607 182 262 78 47 chr5 3001026 3001090 -149536169 - L3 LINE CR1 -1156 3333 3268 1 607 34 55 0 0 chr5 3001581 3001636 -149535623 + AT_rich Low_complexity Low_complexity 1 55 0 2 607 382 267 72 19 chr5 3002354 3002543 -149534716 + Lx8 LINE L1 5019 5230 -916 3 607 908 130 150 17 chr5 3002653 3002950 -149534309 + L1_Mus4 LINE L1 6422 6636 0 4 607 667 320 83 19 chr5 3002960 3003482 -149533777 + Lx8 LINE L1 5328 5869 -1604 3 607 262 243 0 51 chr5 3005126 3005204 -149532055 + GA-rich Low_complexity Low_complexity 3 76 0 5 607 510 182 30 24 chr5 3005398 3005567 -149531692 + CT-rich Low_complexity Low_complexity 3 172 0 6 607 445 298 31 77 chr5 3006179 3006401 -149530858 + RMER10A LTR ERVL 1 212 -230 7 607 513 47 0 0 chr5 3006856 3006920 -149530339 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 607 22 35 0 0 chr5 3007244 3007273 -149529986 + AT_rich Low_complexity Low_complexity 1 29 0 9 607 272 311 39 94 chr5 3007384 3007565 -149529694 + B2_Mm1t SINE B2 6 176 -19 1 607 391 235 131 36 chr5 3008581 3008718 -149528541 - RMER13A LTR ERVK 0 860 711 1 607 2797 180 41 23 chr5 3008718 3009235 -149528024 + RLTR11A2 LTR ERVK 2 527 0 1 607 406 200 182 59 chr5 3009887 3010057 -149527202 + MYSERV6-int LTR ERVK 6465 6655 -2304 1 607 403 266 8 58 chr5 3010444 3010564 -149526695 + B1_Mur3 SINE Alu 36 149 0 1 607 5443 109 74 11 chr5 3010712 3011519 -149525740 - Lx LINE L1 -2 6652 5795 1 607 249 57 0 0 chr5 3011524 3011559 -149525700 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 607 498 278 17 9 chr5 3011916 3012032 -149525227 - RSINE1 SINE B4 -38 127 11 1 607 1068 182 27 0 chr5 3012483 3012670 -149524589 - B2_Mm2 SINE B2 -3 192 1 1 607 215 333 0 0 chr5 3012878 3012938 -149524321 + ID4_ SINE ID 1 60 -23 1 607 270 228 0 106 chr5 3013022 3013103 -149524156 + B4A SINE B4 192 269 -23 2 607 378 0 0 0 chr5 3013103 3013145 -149524114 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 607 270 228 0 106 chr5 3013145 3013176 -149524083 + B4A SINE B4 270 292 0 2 607 236 356 96 0 chr5 3014167 3014302 -149522957 + L1ME3B LINE L1 1576 1723 -4443 2 75 435 334 70 45 chr5 3014439 3014796 -149522463 + L1ME3B LINE L1 5527 5892 -348 2 608 245 360 36 36 chr5 3015282 3015449 -149521810 - L2b LINE L2 -279 3096 2930 2 608 249 108 0 0 chr5 3015846 3015883 -149521376 + (ATG)n Simple_repeat Simple_repeat 2 38 0 2 608 228 288 107 33 chr5 3016028 3016150 -149521109 + Arthur1C DNA Tip100 1 131 -232 2 608 466 279 56 12 chr5 3016321 3016481 -149520778 + MER20 DNA MER1_type 52 218 -1 2 608 682 304 123 22 chr5 3016515 3016791 -149520468 + Arthur1 DNA Tip100 368 671 -3276 2 608 521 256 43 49 chr5 3016859 3017023 -149520236 + RSINE1 SINE B4 3 165 0 2 608 217 254 62 92 chr5 3018292 3018422 -149518837 - MIR SINE MIR -90 172 47 2 608 328 319 0 99 chr5 3020387 3020488 -149516771 - PB1D7 SINE Alu -6 114 21 3 608 1796 221 34 84 chr5 3020747 3021376 -149515883 - RLTR1D LTR ERV1 0 605 52 3 608 8630 250 26 24 chr5 3021397 3024741 -149512518 - MMERGLN-int LTR ERV1 0 7778 4266 3 608 17958 232 18 12 chr5 3024738 3028683 -149508576 - MMERGLN-int LTR ERV1 -3510 4046 27 3 608 384 22 0 0 chr5 3028769 3028814 -149508445 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 608 192 200 0 0 chr5 3029534 3029584 -149507675 + CT-rich Low_complexity Low_complexity 1 50 0 3 608 272 263 26 13 chr5 3029703 3029780 -149507479 - MER5A DNA MER1_type -110 79 2 3 608 216 0 0 0 chr5 3031672 3031696 -149505563 + (T)n Simple_repeat Simple_repeat 1 24 0 3 608 299 213 26 22 chr5 3032511 3032636 -149504623 + PB1D9 SINE Alu 4 132 -17 3 608 3002 142 13 7 chr5 3033563 3034023 -149503236 - L1_Mus4 LINE L1 0 6636 6174 3 608 321 156 0 0 chr5 3034034 3034111 -149503148 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 3 608 3105 167 10 2 chr5 3034580 3035155 -149502104 + L1_Mur2 LINE L1 3100 3679 -2198 4 608 683 215 30 15 chr5 3035584 3035716 -149501543 + ETnERV2-int LTR ERVK 7059 7192 -214 4 608 6979 109 28 11 chr5 3036522 3036605 -149500654 - L1_Mus4 LINE L1 0 6636 6554 4 608 387 0 0 0 chr5 3036605 3036648 -149500611 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 608 6979 109 28 11 chr5 3036648 3036960 -149500299 - L1_Mus4 LINE L1 -83 6553 6231 4 608 2193 124 79 38 chr5 3036960 3037353 -149499906 + RLTR9E LTR ERVK 1 409 0 4 608 10285 138 18 9 chr5 3037353 3038819 -149498440 - L1_Mus4 LINE L1 -406 6230 4745 4 608 3233 26 0 0 chr5 3038819 3039165 -149498094 + ORR1A0 LTR MaLR 1 346 0 4 608 10285 159 10 8 chr5 3039165 3039819 -149497440 - L1_Mus4 LINE L1 -1139 4744 4098 4 608 3249 181 2 12 chr5 3039801 3040406 -149496853 - L1VL4 LINE L1 -5314 988 390 4 608 1560 173 79 112 chr5 3040485 3040940 -149496319 - L1_Mur1 LINE L1 -514 5372 4933 4 608 2563 150 5 0 chr5 3040942 3041369 -149495890 + L1_Mur2 LINE L1 4178 4606 -1271 4 608 216 259 11 80 chr5 3042270 3042358 -149494901 + MIR3 SINE MIR 15 96 -112 4 608 249 33 0 0 chr5 3042881 3042911 -149494348 + (CAG)n Simple_repeat Simple_repeat 3 32 0 4 608 258 116 0 0 chr5 3042965 3043008 -149494251 + (CAG)n Simple_repeat Simple_repeat 1 43 0 4 608 1915 169 0 15 chr5 3044296 3044632 -149492627 + L1_Mm LINE L1 4601 4931 -952 5 608 626 337 57 29 chr5 3044718 3045333 -149491926 - L1_Rod LINE L1 -3938 1909 1278 5 608 2291 176 121 79 chr5 3045337 3045992 -149491267 - RMER6C LTR ERVK -8 682 1 5 608 612 220 17 0 chr5 3046162 3046280 -149490979 + PB1D9 SINE Alu 1 120 0 5 608 286 276 5 169 chr5 3046290 3046491 -149490768 + Lx7 LINE L1 6087 6254 -1442 5 608 470 264 11 84 chr5 3048163 3048341 -149488918 + RLTR19-int LTR ERVK 3548 3712 -2425 5 608 2651 143 77 38 chr5 3048350 3048872 -149488387 - MT2B2 LTR ERVL -42 542 1 5 608 391 157 193 0 chr5 3048902 3048985 -149488274 - LSU-rRNA_Hsa rRNA rRNA -735 4300 4202 5 608 210 118 0 0 chr5 3049008 3049042 -149488217 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 608 666 222 11 11 chr5 3049148 3049326 -149487933 + RMER3D-int LTR ERVK 1098 1275 -1567 5 608 747 0 0 0 chr5 3049330 3049413 -149487846 + (GTTTG)n Simple_repeat Simple_repeat 2 84 0 6 608 1186 59 0 0 chr5 3049416 3049552 -149487707 - B1_Mus1 SINE Alu -12 136 1 6 608 282 309 51 68 chr5 3049644 3049762 -149487497 + RSINE1 SINE B4 19 134 -31 6 608 225 0 0 0 chr5 3049767 3049792 -149487467 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 608 1197 156 47 14 chr5 3050649 3050863 -149486396 - Lx3A LINE L1 -3 6978 6758 6 608 251 308 0 33 chr5 3052023 3052124 -149485135 + ID4 SINE ID 8 100 -52 6 608 225 0 0 0 chr5 3052297 3052322 -149484937 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 608 305 75 0 19 chr5 3052324 3052378 -149484881 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 608 306 353 60 0 chr5 3052427 3052543 -149484716 + RSINE1 SINE B4 5 127 -38 6 608 2942 180 10 25 chr5 3052868 3053460 -149483799 + L1_Mur2 LINE L1 3097 3679 -2198 6 608 3045 103 21 2 chr5 3053594 3054022 -149483237 + L1_Mus3 LINE L1 6191 6626 -12 7 608 403 163 15 0 chr5 3054066 3054146 -149483113 + L1_Rod LINE L1 4202 4308 -1835 7 608 265 239 39 110 chr5 3054162 3054289 -149482970 - Lx8 LINE L1 -1224 6249 6132 7 608 581 273 97 14 chr5 3054363 3054508 -149482751 - RSINE1 SINE B4 -3 162 6 7 608 583 334 79 36 chr5 3055555 3055801 -149481458 - L1MD1 LINE L1 -19 6223 5968 7 608 1547 204 84 42 chr5 3055801 3056160 -149481099 - ORR1D1 LTR MaLR 0 374 1 7 608 583 334 79 36 chr5 3056160 3056407 -149480852 - L1MD1 LINE L1 -275 5967 5709 7 608 715 200 0 0 chr5 3056413 3056538 -149480721 - Lx6 LINE L1 -1091 6369 6245 7 608 405 243 110 0 chr5 3057370 3057506 -149479753 - L1MD1 LINE L1 -754 5488 5338 7 608 251 289 19 0 chr5 3057678 3057730 -149479529 + tRNA-Ala-GCA tRNA tRNA 5 57 -18 7 608 362 254 74 0 chr5 3057759 3057881 -149479378 - L1MD1 LINE L1 -991 5155 5025 7 608 2150 231 7 0 chr5 3057893 3058448 -149478811 + Lx4B LINE L1 6343 6995 -63 7 608 377 256 51 8 chr5 3058519 3058637 -149478622 - L1MD1 LINE L1 -1151 4995 4873 7 608 2978 243 60 18 chr5 3058645 3059429 -149477830 - Lx6 LINE L1 -921 6539 5723 7 608 1679 198 48 0 chr5 3060694 3061007 -149476252 - L1_Mur3 LINE L1 -85 5795 5468 8 608 720 263 9 0 chr5 3061020 3061237 -149476022 - L1_Mur3 LINE L1 -4121 1759 1541 8 608 477 67 0 0 chr5 3061236 3061296 -149475963 + Lx2 LINE L1 6240 6299 -698 8 608 7699 203 3 3 chr5 3061290 3062788 -149474471 - L1_Mm LINE L1 -30 5853 4356 8 608 5196 48 2 2 chr5 3063335 3063963 -149473296 + L1Md_F2 LINE L1 5924 6551 -31 8 608 2830 180 14 7 chr5 3063958 3064524 -149472735 + L1Md_A LINE L1 410 979 -5745 8 608 34935 72 11 20 chr5 3064524 3069741 -149467518 + L1Md_T LINE L1 217 5586 -297 8 608 8687 38 12 0 chr5 3069741 3070724 -149466535 + L1Md_T LINE L1 5587 6581 -1 8 608 259 268 72 0 chr5 3072935 3073032 -149464227 + B1_Mus2 SINE Alu 22 125 -22 8 608 350 273 98 8 chr5 3073446 3073579 -149463680 - B3 SINE B2 -2 214 70 8 608 4460 110 149 28 chr5 3074368 3075161 -149462098 - RMER17D LTR ERVK 0 889 1 8 608 249 279 33 0 chr5 3075599 3075660 -149461599 + ID4_ SINE ID 8 70 -13 9 608 206 135 0 26 chr5 3075869 3075907 -149461352 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 608 192 40 0 0 chr5 3076059 3076084 -149461175 + (TCTCTG)n Simple_repeat Simple_repeat 6 30 0 9 608 3566 202 22 45 chr5 3076377 3077151 -149460108 + L1_Mur2 LINE L1 3074 3823 -2054 9 608 188 35 35 0 chr5 3077151 3077180 -149460079 + (CAA)n Simple_repeat Simple_repeat 1 30 0 9 608 3566 199 403 31 chr5 3077180 3077438 -149459821 + L1_Mur2 LINE L1 3824 4184 -1693 9 608 3285 198 14 121 chr5 3077453 3078421 -149458838 - ORR1A4-int LTR MaLR -920 1043 182 9 608 228 242 32 0 chr5 3078406 3078468 -149458791 - ORR1A4 LTR MaLR -265 64 1 9 608 1815 158 3 7 chr5 3078473 3078778 -149458481 - ORR1A2 LTR MaLR 0 327 24 9 608 487 305 88 39 chr5 3079113 3079294 -149457965 - Lx8 LINE L1 -166 7307 7118 9 608 231 61 0 0 chr5 3079304 3079337 -149457922 + (TTTTTG)n Simple_repeat Simple_repeat 1 33 0 9 608 20647 194 31 26 chr5 3080433 3083504 -149453755 + Lx2A1 LINE L1 934 4087 -1799 9 608 3661 196 26 59 chr5 3083504 3084388 -149452871 - RLTR13A LTR ERVK 0 855 1 1 608 20647 197 31 30 chr5 3084388 3085615 -149451644 + Lx2A1 LINE L1 4088 5266 -620 9 608 1272 41 7 0 chr5 3085615 3085761 -149451498 + B1_Mm SINE Alu 1 147 0 1 608 20647 165 26 31 chr5 3085761 3087528 -149449731 + Lx2A1 LINE L1 5267 7005 -3 9 608 921 224 153 101 chr5 3087549 3087966 -149449293 - RMER6B LTR ERVK -17 444 6 1 608 1278 222 79 21 chr5 3088264 3088610 -149448649 - RLTR19 LTR ERVK -7 489 108 1 608 531 0 0 0 chr5 3088610 3088669 -149448590 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1 608 1278 203 45 10 chr5 3088669 3088761 -149448498 - RLTR19 LTR ERVK -392 107 8 1 608 332 317 69 25 chr5 3089642 3089811 -149447448 - ID_B1 SINE B4 -3 221 44 1 608 1345 224 101 22 chr5 3089811 3090099 -149447160 + RLTR19 LTR ERVK 1 319 -180 1 608 207 69 0 0 chr5 3090099 3090128 -149447131 + (ATTTG)n Simple_repeat Simple_repeat 1 29 0 1 608 1345 224 101 22 chr5 3090128 3090204 -149447055 + RLTR19 LTR ERVK 320 393 -106 1 608 751 227 48 16 chr5 3090422 3090610 -149446649 - RLTR19 LTR ERVK -304 195 2 1 608 186 43 0 0 chr5 3092685 3092708 -149444551 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 1 608 423 0 0 0 chr5 3092738 3092785 -149444474 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 608 211 346 12 0 chr5 3092876 3092957 -149444302 - MER5A DNA MER1_type -96 93 12 1 608 21 57 0 0 chr5 3095443 3095478 -149441781 + AT_rich Low_complexity Low_complexity 1 35 0 1 608 285 242 63 0 chr5 3095533 3095628 -149441631 + B1_Mur4 SINE Alu 23 123 -27 1 608 315 0 0 0 chr5 3096001 3096036 -149441223 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 608 266 302 108 8 chr5 3096057 3096187 -149441072 - B3 SINE B2 -1 215 73 1 608 240 284 19 37 chr5 3097384 3097488 -149439771 + ID4_ SINE ID 8 105 -47 1 608 213 39 0 0 chr5 3097563 3097589 -149439670 + (CCCCCA)n Simple_repeat Simple_repeat 4 29 0 1 608 1266 55 7 0 chr5 3097748 3097894 -149439365 + B1_Mm SINE Alu 1 147 0 1 608 279 359 39 10 chr5 3097938 3098042 -149439217 + RSINE1 SINE B4 5 111 -54 1 608 440 18 18 0 chr5 3098048 3098105 -149439154 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 608 792 148 114 21 chr5 3098368 3098561 -149438698 + L1_Mur2 LINE L1 3075 3285 -2592 1 608 384 149 15 15 chr5 3098541 3098609 -149438650 - L1_Mus2 LINE L1 -194 6372 6305 1 608 449 63 0 81 chr5 3098597 3098683 -149438576 + L1_Mus2 LINE L1 6439 6517 -49 1 608 1825 160 22 16 chr5 3098683 3099001 -149438258 + RLTR46 LTR ERVK 1 320 0 1 608 271 202 22 56 chr5 3099001 3099090 -149438169 + IAPEY3-int LTR ERVK 1 86 -7594 1 608 410 189 178 26 chr5 3099118 3099270 -149437989 + IAPEY3-int LTR ERVK 574 748 -6932 1 608 638 154 91 0 chr5 3099275 3099385 -149437874 + IAPEY3-int LTR ERVK 940 1059 -6621 1 608 688 144 9 9 chr5 3099742 3099854 -149437405 + MMVL30-int LTR ERV1 1252 1363 -2335 1 608 387 239 51 149 chr5 3099904 3100081 -149437178 + LSU-rRNA_Hsa rRNA rRNA 424 586 -4449 1 608 243 0 0 0 chr5 3100081 3100108 -149437151 + (G)n Simple_repeat Simple_repeat 1 27 0 1 608 387 239 51 149 chr5 3100108 3100225 -149437034 + LSU-rRNA_Hsa rRNA rRNA 587 689 -4346 1 608 640 162 185 35 chr5 3100226 3100399 -149436860 + MMERVK10C-int LTR ERVK 439 637 -4769 1 608 333 140 18 0 chr5 3100510 3100567 -149436692 + MMERVK10C-int LTR ERVK 1089 1146 -4260 1 608 7825 88 75 19 chr5 3100569 3102495 -149434764 + MMERVK10C-int LTR ERVK 1885 3919 -3662 1 608 23347 105 7 3 chr5 3102494 3105851 -149431408 + MMERVK10C-int LTR ERVK 4125 7513 0 1 608 1794 152 35 16 chr5 3105851 3106165 -149431094 + RLTR46 LTR ERVK 1 320 0 1 608 239 103 0 25 chr5 3106165 3106205 -149431054 + L1_Mus2 LINE L1 6512 6550 -16 1 608 32597 84 36 5 chr5 3106202 3112327 -149424932 + L1_Mus1 LINE L1 240 6566 -1 1 608 2020 202 102 0 chr5 3112381 3112882 -149424377 + L1_Mur2 LINE L1 3938 4489 -1388 1 608 2797 184 7 9 chr5 3112885 3113438 -149423821 - MT2B LTR ERVL -49 552 1 1 608 918 206 99 16 chr5 3113438 3113670 -149423589 - ORR1A4-int LTR MaLR -394 1569 1318 1 608 3809 31 0 0 chr5 3113670 3114152 -149423107 - LTRIS_Mm LTR ERV1 0 482 1 1 608 4860 199 29 86 chr5 3114152 3115546 -149421713 - ORR1A4-int LTR MaLR -641 1322 10 1 608 952 212 118 70 chr5 3115556 3115870 -149421389 - ORR1A4 LTR MaLR 0 329 1 1 608 955 151 70 0 chr5 3115875 3116061 -149421198 - ORR1A2 LTR MaLR 0 327 129 1 608 7820 182 75 12 chr5 3116077 3117763 -149419496 - ORR1A2-int LTR MaLR 0 1792 1 1 608 1961 136 9 0 chr5 3117767 3118083 -149419176 - ORR1A2 LTR MaLR -8 319 1 1 608 325 253 11 11 chr5 3118085 3118173 -149419086 + L1_Mur2 LINE L1 4637 4724 -1153 1 608 1760 157 0 0 chr5 3118173 3118459 -149418800 - MYSERV6-int LTR ERVK -7667 1292 1007 1 608 238 26 25 25 chr5 3118459 3118499 -149418760 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1 608 282 123 0 0 chr5 3118536 3118593 -149418666 + (A)n Simple_repeat Simple_repeat 1 57 0 1 608 4025 222 51 31 chr5 3118593 3119579 -149417680 - MYSERV6-int LTR ERVK -7954 1005 1 1 608 546 202 8 23 chr5 3119579 3119711 -149417548 - RMER6B LTR ERVK 0 461 332 1 608 23 101 0 0 chr5 3119788 3119867 -149417392 + AT_rich Low_complexity Low_complexity 1 79 0 1 608 1984 77 7 4 chr5 3119875 3120150 -149417109 - L1_Mus4 LINE L1 -6 6630 6355 1 608 633 165 55 0 chr5 3120317 3120444 -149416815 - RMER6B LTR ERVK -326 135 2 1 608 792 197 10 55 chr5 3120618 3120817 -149416442 - B2_Mm2 SINE B2 -4 191 2 1 608 2095 198 119 0 chr5 3120932 3121377 -149415882 - RLTR19 LTR ERVK -1 498 1 1 608 2050 212 28 30 chr5 3122438 3122938 -149414321 + RLTR19 LTR ERVK 1 715 0 1 608 237 266 0 0 chr5 3125613 3125677 -149411582 + CT-rich Low_complexity Low_complexity 2 65 0 1 608 36888 58 3 36 chr5 3127808 3128860 -149408399 + L1Md_T LINE L1 459 1469 -4414 1 608 2778 28 0 27 chr5 3128860 3129195 -149408064 - IAPLTR3 LTR ERVK 0 326 1 1 608 36888 26 4 2 chr5 3129195 3133304 -149403955 + L1Md_T LINE L1 1470 5586 -297 1 608 8530 38 0 0 chr5 3133304 3134300 -149402959 + L1Md_T LINE L1 5587 6582 0 1 608 2387 66 119 11 chr5 3134398 3134750 -149402509 + RLTR10 LTR ERVK 1 390 0 1 608 1612 115 4 36 chr5 3135375 3135654 -149401605 - Lx3A LINE L1 -4 6977 6708 1 608 2988 102 42 0 chr5 3135654 3136103 -149401156 - L1_Mur1 LINE L1 -1208 4678 4211 1 608 180 0 0 0 chr5 3137100 3137120 -149400139 + (CAGC)n Simple_repeat Simple_repeat 2 21 0 1 608 428 290 132 20 chr5 3137450 3137478 -149399781 + LTR16A LTR ERVL 228 255 -196 1 608 2370 133 59 38 chr5 3137478 3137899 -149399360 + RLTR23 LTR ERV1 1 430 0 1 608 428 290 132 20 chr5 3137899 3138067 -149399192 + LTR16A LTR ERVL 256 446 -5 1 608 332 205 66 74 chr5 3138124 3138245 -149399014 - MTEa LTR MaLR 0 379 260 1 608 453 256 138 32 chr5 3138247 3138587 -149398672 + RMER10A LTR ERVL 3 426 -16 1 608 516 199 60 66 chr5 3138688 3138839 -149398420 - MTEa LTR MaLR -229 150 1 1 608 215 288 134 52 chr5 3139830 3140002 -149397257 + L2 LINE L2 2421 2606 -813 1 608 188 376 42 14 chr5 3140424 3140567 -149396692 - L2 LINE L2 -944 2475 2329 1 608 300 288 0 0 chr5 3141321 3141394 -149395865 + Lx9 LINE L1 7405 7477 -167 1 608 192 158 0 0 chr5 3141396 3141434 -149395825 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 608 779 303 64 39 chr5 3141603 3142043 -149395216 + RLTR17 LTR ERVK 116 566 -126 1 608 291 206 32 0 chr5 3142112 3142175 -149395084 + RLTR31_Mur LTR ERVK 489 553 0 1 608 449 243 130 14 chr5 3142539 3142677 -149394582 - B3A SINE B2 -41 157 4 1 608 783 255 49 71 chr5 3143692 3144096 -149393163 + RLTR11B LTR ERVK 1 413 -28 1 608 350 295 45 15 chr5 3144301 3144435 -149392824 + RSINE1 SINE B4 9 146 -19 1 608 1676 26 0 0 chr5 3144605 3144794 -149392465 + B2_Mm1a SINE B2 1 189 -4 1 608 1237 184 25 36 chr5 3145058 3145335 -149391924 + RLTR46 LTR ERVK 42 315 -5 1 608 701 235 53 27 chr5 3145515 3145703 -149391556 + B3A SINE B2 5 197 -1 1 9 324 0 0 0 chr5 3145715 3145751 -149391508 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 609 405 281 45 13 chr5 3145966 3146121 -149391138 + B4A SINE B4 114 273 -19 1 609 1754 10 0 0 chr5 3147039 3147231 -149390028 + B2_Mm1a SINE B2 2 193 0 1 609 633 128 0 0 chr5 3147379 3147481 -149389778 + (GA)n Simple_repeat Simple_repeat 1 102 0 1 609 184 278 88 11 chr5 3147535 3147626 -149389633 - L3b LINE CR1 -196 286 189 1 609 265 216 137 0 chr5 3147826 3147928 -149389331 + Lx9 LINE L1 7522 7637 -7 1 609 4478 67 5 2 chr5 3148046 3148618 -149388641 - L1_Mus3 LINE L1 -2 6636 6063 1 609 231 114 0 0 chr5 3149067 3149102 -149388157 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 1 609 190 242 97 0 chr5 3149151 3149213 -149388046 + L3b LINE CR1 301 368 -114 1 609 986 253 29 40 chr5 3149455 3149519 -149387740 - B4 SINE B4 -10 282 223 1 609 315 0 0 0 chr5 3149519 3149554 -149387705 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 609 986 253 29 40 chr5 3149554 3149761 -149387498 - B4 SINE B4 -70 222 14 1 609 198 0 0 0 chr5 3150535 3150557 -149386702 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 609 204 54 25 75 chr5 3151139 3151179 -149386080 + A-rich Low_complexity Low_complexity 5 42 0 1 609 3067 72 45 0 chr5 3153556 3153974 -149383285 + Lx3_Mus LINE L1 6565 7001 -8 1 609 316 343 22 0 chr5 3154037 3154171 -149383088 + RMER15 LTR ERVL 422 558 -17 1 609 23 33 0 0 chr5 3154212 3154242 -149383017 + AT_rich Low_complexity Low_complexity 1 30 0 1 609 1115 62 14 0 chr5 3154446 3154590 -149382669 + B1_Mus2 SINE Alu 2 147 0 1 609 22 0 0 0 chr5 3154590 3154612 -149382647 + AT_rich Low_complexity Low_complexity 1 22 0 1 609 432 244 0 0 chr5 3154778 3154905 -149382354 + (CA)n Simple_repeat Simple_repeat 1 127 0 1 609 436 279 9 0 chr5 3154923 3155034 -149382225 + Tigger5 DNA MER2_type 31 142 -2264 1 609 524 256 44 25 chr5 3155245 3155405 -149381854 + RSINE1 SINE B4 3 165 0 1 609 46 19 0 0 chr5 3155418 3155471 -149381788 + AT_rich Low_complexity Low_complexity 1 53 0 1 609 6648 165 28 9 chr5 3155478 3156859 -149380400 - Lx2B LINE L1 -156 6894 5417 1 609 2342 52 0 0 chr5 3156928 3157216 -149380043 - L1Md_F2 LINE L1 0 6582 6295 1 609 246 114 0 0 chr5 3157219 3157254 -149380005 - L1Md_F2 LINE L1 -388 6196 6162 1 609 430 344 117 15 chr5 3157260 3157602 -149379657 - Looper DNA PiggyBac -544 1014 638 1 609 599 246 16 95 chr5 3157763 3157952 -149379307 - B3 SINE B2 -8 208 35 1 609 605 286 116 47 chr5 3157954 3158156 -149379103 - Looper DNA PiggyBac -1060 498 304 1 609 4315 65 0 0 chr5 3158156 3158683 -149378576 - L1_Mus1 LINE L1 -1 6566 6040 1 609 605 286 116 47 chr5 3158683 3158946 -149378313 - Looper DNA PiggyBac -1255 303 1 1 609 285 332 41 115 chr5 3159462 3159680 -149377579 + B4 SINE B4 68 269 -23 1 609 21 0 0 0 chr5 3159696 3159717 -149377542 + AT_rich Low_complexity Low_complexity 1 21 0 1 609 180 111 0 0 chr5 3159736 3159763 -149377496 + (CCCCAG)n Simple_repeat Simple_repeat 6 32 0 1 609 434 252 50 52 chr5 3159849 3160095 -149377164 + LTRIS_Mm LTR ERV1 276 628 0 1 609 1460 132 97 39 chr5 3160095 3160726 -149376533 - RMER6C LTR ERVK -11 709 122 1 609 3090 56 26 0 chr5 3160730 3161120 -149376139 - MTB LTR MaLR 0 400 1 1 609 5166 69 72 86 chr5 3161120 3162042 -149375217 - MTB-int LTR MaLR 0 1098 190 1 609 1753 115 28 28 chr5 3162042 3162364 -149374895 + RLTRETN_Mm LTR ERVK 1 322 0 2 609 1489 36 0 0 chr5 3162364 3162559 -149374700 - MTB-int LTR MaLR -903 195 1 1 609 1659 35 70 0 chr5 3162585 3162812 -149374447 - ORR1A1 LTR MaLR -103 243 1 2 609 568 132 0 11 chr5 3162829 3162921 -149374338 - RMER6C LTR ERVK -599 91 1 1 609 1205 54 0 0 chr5 3163582 3163729 -149373530 + B1_Mus2 SINE Alu 1 147 0 2 609 21 0 0 0 chr5 3164621 3164642 -149372617 + AT_rich Low_complexity Low_complexity 1 21 0 2 609 477 0 0 0 chr5 3165259 3165312 -149371947 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 609 330 300 18 9 chr5 3165797 3165908 -149371351 - MIR SINE MIR -137 125 14 2 609 11510 152 51 57 chr5 3166263 3169322 -149367937 + ETnERV3-int LTR ERVK 2235 6071 -1173 2 609 1685 145 0 4 chr5 3169336 3169593 -149367666 + ETnERV3-int LTR ERVK 5529 5784 -24 2 609 3205 127 31 24 chr5 3169603 3170142 -149367117 + RLTR13D1 LTR ERVK 1 543 -359 2 609 3762 95 35 9 chr5 3170115 3170680 -149366579 + RLTR13D1 LTR ERVK 227 806 0 2 609 313 254 48 47 chr5 3170752 3170916 -149366343 + MIRc SINE MIR 14 180 -28 2 609 4188 203 71 36 chr5 3171391 3172167 -149365092 + L1_Mur3 LINE L1 138 949 -6763 2 609 1111 174 65 14 chr5 3172167 3172382 -149364877 - URR1A DNA MER1_type 0 226 1 2 609 4188 203 71 36 chr5 3172382 3172649 -149364610 + L1_Mur3 LINE L1 950 1217 -6495 2 609 1761 112 39 28 chr5 3172669 3172910 -149364349 - Lx2B LINE L1 -2 6998 6755 2 609 207 100 0 0 chr5 3172910 3172940 -149364319 + (TATG)n Simple_repeat Simple_repeat 3 32 0 2 609 1761 112 39 28 chr5 3172940 3172983 -149364276 - Lx2B LINE L1 -246 6754 6711 2 609 2667 112 3 13 chr5 3172983 3173371 -149363888 + Lx2B LINE L1 6318 6701 -299 2 609 4840 198 28 47 chr5 3173365 3174387 -149362872 + Lx7 LINE L1 6365 7367 -329 2 609 31 68 0 0 chr5 3174388 3174447 -149362812 + AT_rich Low_complexity Low_complexity 1 59 0 2 609 1453 189 65 12 chr5 3174453 3174775 -149362484 + Lx7 LINE L1 7356 7694 -2 2 609 38694 14 1 0 chr5 3175315 3180450 -149356809 - L1Md_A LINE L1 0 6582 1501 2 609 3128 25 42 6 chr5 3180450 3180804 -149356455 + IAPLTR1_Mm LTR ERVK 1 367 0 2 609 6762 54 89 76 chr5 3180804 3181831 -149355428 + IAPEz-int LTR ERVK 8 1047 -5434 2 609 31777 16 1 2 chr5 3181820 3185324 -149351935 + IAPEz-int LTR ERVK 2982 6481 0 2 609 3128 25 42 6 chr5 3185324 3185678 -149351581 + IAPLTR1_Mm LTR ERVK 1 367 0 2 609 9115 22 10 29 chr5 3185678 3187000 -149350259 - L1Md_A LINE L1 -4377 1506 214 2 609 26 0 0 0 chr5 3187008 3187034 -149350225 + AT_rich Low_complexity Low_complexity 1 26 0 2 609 26130 103 8 18 chr5 3187063 3191184 -149346075 - L1Md_F2 LINE L1 -2 6580 2626 2 609 2133 137 98 36 chr5 3191184 3191631 -149345628 - IAPLTR2_Mm LTR ERVK 0 475 1 2 609 26130 99 8 13 chr5 3191631 3193850 -149343409 - L1Md_F2 LINE L1 -3258 2625 446 2 609 279 269 13 13 chr5 3193996 3194075 -149343184 - MIRc SINE MIR -115 153 75 2 609 1112 115 5 0 chr5 3194076 3194267 -149342992 - L1VL4 LINE L1 -5356 946 755 2 609 218 184 67 19 chr5 3194561 3194666 -149342593 + (TA)n Simple_repeat Simple_repeat 1 110 0 2 609 252 0 0 0 chr5 3195028 3195056 -149342203 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 609 21 0 0 0 chr5 3197108 3197129 -149340130 + AT_rich Low_complexity Low_complexity 1 21 0 2 609 308 290 0 0 chr5 3197598 3197660 -149339599 + ID4 SINE ID 3 64 -19 2 609 413 253 82 8 chr5 3199724 3199854 -149337405 - PB1D10 SINE Alu -6 143 3 2 609 353 308 47 0 chr5 3200257 3200364 -149336895 + MER44D DNA MER2_type 2 113 -592 2 609 364 239 50 36 chr5 3200357 3200496 -149336763 + MER44D DNA MER2_type 514 654 -51 2 609 29 0 0 0 chr5 3200774 3200803 -149336456 + AT_rich Low_complexity Low_complexity 1 29 0 2 609 587 298 16 22 chr5 3200817 3200999 -149336260 - B3A SINE B2 -15 183 3 2 609 429 20 0 0 chr5 3201014 3201064 -149336195 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 609 243 296 0 27 chr5 3201677 3201750 -149335509 - B4A SINE B4 -6 286 216 2 609 897 274 10 0 chr5 3201823 3202020 -149335239 - B4A SINE B4 -77 215 17 2 609 314 61 20 0 chr5 3202025 3202074 -149335185 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 609 456 299 35 89 chr5 3202076 3202245 -149335014 - B3A SINE B2 -38 160 1 2 609 1105 280 26 4 chr5 3202905 3203177 -149334082 + B4A SINE B4 9 286 -6 2 609 294 253 14 0 chr5 3203957 3204045 -149333214 + L1MC LINE L1 4704 4792 -1351 2 609 517 289 13 26 chr5 3204437 3204593 -149332666 - Lx8 LINE L1 -263 7210 7057 2 609 1610 274 94 14 chr5 3204591 3205079 -149332180 - Lx8 LINE L1 -633 6840 6314 2 609 780 32 0 0 chr5 3206591 3206686 -149330573 + (TG)n Simple_repeat Simple_repeat 1 95 0 2 609 496 265 43 14 chr5 3206871 3207009 -149330250 - B1F SINE Alu -3 146 5 2 609 451 301 14 14 chr5 3206887 3207025 -149330234 - ID_B1 SINE B4 -17 207 70 2 609 273 316 52 25 chr5 3207269 3207401 -149329858 + MIRc SINE MIR 1 136 -132 2 609 707 226 7 20 chr5 3207788 3207937 -149329322 + B1_Mur3 SINE Alu 1 147 -2 2 609 206 156 0 22 chr5 3207937 3207983 -149329276 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2 609 189 0 0 0 chr5 3208151 3208172 -149329087 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 609 425 106 330 0 chr5 3208599 3208693 -149328566 - URR1B DNA MER1_type 0 225 101 2 609 22 56 0 0 chr5 3209133 3209169 -149328090 + AT_rich Low_complexity Low_complexity 1 36 0 2 609 570 226 0 16 chr5 3209234 3209358 -149327901 - PB1D9 SINE Alu -21 128 13 2 609 1102 102 0 26 chr5 3209358 3209495 -149327764 + B1_Mm SINE Alu 1 137 -10 2 609 252 0 0 0 chr5 3209495 3209523 -149327736 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2 609 1102 102 0 26 chr5 3209523 3209536 -149327723 + B1_Mm SINE Alu 138 147 0 2 609 3472 60 28 14 chr5 3209558 3209994 -149327265 - L1Md_F2 LINE L1 -12 6570 6129 2 609 543 295 144 50 chr5 3210167 3210269 -149326990 + L1MA5 LINE L1 5711 5814 -486 2 609 183 42 0 0 chr5 3210269 3210293 -149326966 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 609 543 295 144 50 chr5 3210293 3210711 -149326548 + L1MA5 LINE L1 5815 6279 -21 2 609 234 289 53 0 chr5 3211324 3211400 -149325859 - L1MB8 LINE L1 -12 6166 6087 2 609 1471 231 64 35 chr5 3211421 3212024 -149325235 + Lx7 LINE L1 5501 6157 -1539 2 609 1214 95 0 6 chr5 3212620 3212800 -149324459 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 609 411 224 7 19 chr5 3212800 3212955 -149324304 + GA-rich Low_complexity Low_complexity 1 153 0 2 609 262 143 0 31 chr5 3214573 3214638 -149322621 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 609 1006 45 7 15 chr5 3214835 3214970 -149322289 + B1_Mm SINE Alu 14 147 0 2 609 180 0 0 0 chr5 3214970 3214990 -149322269 + (A)n Simple_repeat Simple_repeat 1 20 0 2 609 288 303 19 13 chr5 3215000 3215157 -149322102 + (CA)n Simple_repeat Simple_repeat 2 159 0 2 609 211 216 39 0 chr5 3215247 3215298 -149321961 + CT-rich Low_complexity Low_complexity 5 57 0 2 609 188 250 58 0 chr5 3215477 3215529 -149321730 + L2a LINE L2 3330 3384 -42 2 609 360 0 0 0 chr5 3215555 3215595 -149321664 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 2 609 32 43 0 0 chr5 3215892 3215938 -149321321 + AT_rich Low_complexity Low_complexity 1 46 0 2 609 295 265 245 0 chr5 3216175 3216277 -149320982 - B1_Mur1 SINE Alu -22 127 1 2 609 468 0 0 0 chr5 3216608 3216660 -149320599 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 609 517 281 105 28 chr5 3216663 3216806 -149320453 - RSINE1 SINE B4 -10 155 2 2 609 349 288 0 0 chr5 3217038 3217111 -149320148 + PB1D10 SINE Alu 29 101 -16 2 609 477 304 106 57 chr5 3217113 3217210 -149320049 + B4A SINE B4 8 93 -199 2 609 588 111 0 0 chr5 3217210 3217318 -149319941 + (TG)n Simple_repeat Simple_repeat 2 109 0 2 609 477 304 106 57 chr5 3217318 3217447 -149319812 + B4A SINE B4 94 244 -48 2 609 324 0 0 0 chr5 3217467 3217503 -149319756 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 609 297 0 0 0 chr5 3217503 3217535 -149319724 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 609 508 316 33 78 chr5 3217543 3217849 -149319410 - MER58B DNA MER1_type -13 328 37 2 609 291 253 46 46 chr5 3218626 3218713 -149318546 - MLT1A0 LTR MaLR -114 251 165 2 609 576 255 13 38 chr5 3218722 3218881 -149318378 + B4A SINE B4 137 291 -1 2 609 204 283 0 0 chr5 3218900 3218946 -149318313 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 609 766 165 128 0 chr5 3219211 3219344 -149317915 - B1_Mur4 SINE Alu 0 150 1 2 609 198 0 0 0 chr5 3220349 3220371 -149316888 + (TTG)n Simple_repeat Simple_repeat 1 22 0 2 609 1367 250 119 14 chr5 3220380 3220749 -149316510 + MTD LTR MaLR 12 419 0 2 609 188 293 94 60 chr5 3220866 3221015 -149316244 - MER5B DNA MER1_type -21 157 4 2 609 279 0 0 0 chr5 3221307 3221338 -149315921 + (GAAA)n Simple_repeat Simple_repeat 4 34 0 2 609 939 161 10 29 chr5 3221338 3221826 -149315433 + GA-rich Low_complexity Low_complexity 1 478 0 2 609 636 14 0 0 chr5 3222037 3222110 -149315149 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 609 581 304 185 0 chr5 3222127 3222370 -149314889 - B4 SINE B4 -4 288 1 2 609 656 194 329 0 chr5 3222375 3222545 -149314714 + URR1A DNA MER1_type 1 226 0 2 609 282 309 116 40 chr5 3222777 3222976 -149314283 + MIRb SINE MIR 36 253 -15 2 609 380 304 117 48 chr5 3225672 3225903 -149311356 + MIR SINE MIR 16 262 0 2 609 2620 183 65 97 chr5 3226255 3227058 -149310201 + RMER19B LTR ERVK 1 900 -2 2 609 2547 159 116 9 chr5 3227272 3227728 -149309531 + RLTR16 LTR ERVK 1 505 0 2 609 4125 144 69 14 chr5 3228195 3228455 -149308804 + L1_Mur3 LINE L1 3087 3367 -2513 2 609 1332 102 21 5 chr5 3228455 3228642 -149308617 - B2_Mm1t SINE B2 -2 191 2 2 609 4125 144 69 14 chr5 3228642 3229183 -149308076 + L1_Mur3 LINE L1 3368 3932 -1948 2 609 2089 290 26 7 chr5 3229224 3229790 -149307469 + Lx5 LINE L1 6455 7031 -19 2 609 477 330 177 35 chr5 3230059 3230376 -149306883 + MLT1A0 LTR MaLR 1 362 -3 2 609 310 286 82 96 chr5 3231060 3231255 -149306004 + L1MEg LINE L1 650 846 -5238 2 609 1046 84 0 0 chr5 3231255 3231386 -149305873 + L1_Mus1 LINE L1 6430 6560 -7 2 609 310 286 82 96 chr5 3231386 3231630 -149305629 + L1MEg LINE L1 847 1083 -5001 2 609 3474 242 58 26 chr5 3231629 3232515 -149304744 + Lx7 LINE L1 6393 7306 -390 2 609 342 0 0 0 chr5 3232515 3232553 -149304706 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 609 205 261 0 0 chr5 3232555 3232620 -149304639 + T-rich Low_complexity Low_complexity 1 65 0 2 609 277 250 0 63 chr5 3232674 3232785 -149304474 + Lx7 LINE L1 7578 7681 -15 2 609 461 165 106 0 chr5 3232956 3233041 -149304218 - Lx7 LINE L1 -667 7029 6936 2 609 386 213 109 47 chr5 3233144 3233272 -149303987 + MLT1A1 LTR MaLR 271 406 -2 2 609 366 245 28 0 chr5 3233272 3233378 -149303881 + L1MEg LINE L1 1103 1211 -4873 2 609 324 0 0 0 chr5 3233386 3233422 -149303837 + (GTTTG)n Simple_repeat Simple_repeat 3 38 0 3 609 367 344 45 27 chr5 3233536 3233760 -149303499 + L1M4c LINE L1 145 372 -6170 3 609 401 19 38 0 chr5 3233779 3233832 -149303427 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 3 609 576 221 33 0 chr5 3234007 3234129 -149303130 + B1_Mus1 SINE Alu 23 148 0 3 609 464 289 269 30 chr5 3234230 3234696 -149302563 + L1M4c LINE L1 1516 2093 -4553 3 609 348 245 58 58 chr5 3234699 3234803 -149302456 + MLT1B LTR MaLR 16 119 -271 3 609 301 214 31 93 chr5 3234813 3234942 -149302317 + L1M4c LINE L1 2619 2739 -3905 3 609 473 188 0 0 chr5 3234955 3235040 -149302219 - MTE2a LTR MaLR -294 85 1 3 609 1538 287 122 39 chr5 3235040 3235748 -149301511 + L1M4c LINE L1 2854 3640 -3004 3 609 180 0 0 0 chr5 3235748 3235768 -149301491 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 609 1538 287 122 39 chr5 3235768 3236296 -149300963 + L1M4c LINE L1 3641 4193 -2451 3 609 303 28 0 0 chr5 3236908 3236944 -149300315 + (A)n Simple_repeat Simple_repeat 1 36 0 3 609 662 253 45 15 chr5 3238017 3238218 -149299041 - MLT1B LTR MaLR -2 388 182 3 609 379 289 43 65 chr5 3238297 3238482 -149298777 - MLT1B LTR MaLR -208 182 2 3 609 874 276 56 61 chr5 3238482 3238841 -149298418 - ORR1E LTR MaLR -2 357 1 3 609 451 353 80 49 chr5 3238961 3239411 -149297848 - L2 LINE L2 -1741 1678 1215 3 609 642 255 58 7 chr5 3239507 3239645 -149297614 + RSINE1 SINE B4 21 165 0 3 609 437 324 14 20 chr5 3239660 3239808 -149297451 + B4A SINE B4 11 157 -135 3 609 3746 294 76 61 chr5 3239845 3240158 -149297101 + Lx8 LINE L1 5857 6169 -1304 3 609 357 24 0 0 chr5 3240158 3240200 -149297059 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 609 3746 294 76 61 chr5 3240200 3241263 -149295996 + Lx8 LINE L1 6170 7238 -235 3 609 302 0 26 0 chr5 3241263 3241301 -149295958 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 609 3746 294 76 61 chr5 3241301 3241516 -149295743 + Lx8 LINE L1 7239 7473 0 3 609 233 231 115 0 chr5 3241527 3241579 -149295680 + B4A SINE B4 223 280 -12 3 609 420 71 0 0 chr5 3241608 3241664 -149295595 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 609 937 281 27 91 chr5 3241672 3241903 -149295356 + RLTR11B LTR ERVK 1 229 -224 3 609 1037 111 0 6 chr5 3241903 3242067 -149295192 + (GGAGAA)n Simple_repeat Simple_repeat 6 168 0 3 609 937 281 27 91 chr5 3242067 3242286 -149294973 + RLTR11B LTR ERVK 230 422 -31 3 609 497 266 45 40 chr5 3242332 3242532 -149294727 - RLTR11A2 LTR ERVK -326 201 1 3 609 833 241 43 24 chr5 3242616 3242824 -149294435 + B3 SINE B2 3 214 -2 3 609 262 316 0 0 chr5 3244525 3244604 -149292655 + ID4_ SINE ID 3 81 -2 3 609 522 262 34 47 chr5 3245316 3245353 -149291906 - B1_Mur1 SINE Alu -2 147 111 3 609 2858 156 175 36 chr5 3245353 3245959 -149291300 + RMER6C LTR ERVK 1 690 0 3 609 522 262 34 47 chr5 3245959 3246069 -149291190 - B1_Mur1 SINE Alu -39 110 2 3 609 214 240 20 0 chr5 3246074 3246124 -149291135 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 609 963 299 49 28 chr5 3246539 3246825 -149290434 + B4A SINE B4 1 292 0 3 609 433 94 0 15 chr5 3246836 3246901 -149290358 + HAL1-3A_ME LINE L1 1976 2039 -819 3 609 210 208 0 0 chr5 3247249 3247297 -149289962 + T-rich Low_complexity Low_complexity 1 48 0 3 609 225 0 0 0 chr5 3247764 3247789 -149289470 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 609 264 253 164 78 chr5 3248234 3248397 -149288862 - MTEb LTR MaLR -75 304 118 3 609 1553 287 90 11 chr5 3248394 3248859 -149288400 - MTE-int LTR MaLR -294 1286 785 3 609 1615 158 11 3 chr5 3249045 3249331 -149287928 + Lx4B LINE L1 6695 6982 -76 3 609 204 40 0 0 chr5 3249347 3249372 -149287887 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 3 609 213 202 72 8 chr5 3249537 3249662 -149287597 + (TA)n Simple_repeat Simple_repeat 2 134 0 3 609 279 353 8 72 chr5 3249708 3249833 -149287426 - MLT1A LTR MaLR -177 197 81 3 609 504 0 0 0 chr5 3250707 3250763 -149286496 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 609 321 167 0 0 chr5 3250764 3250824 -149286435 - Lx5 LINE L1 -5 7045 6986 3 609 3497 202 43 11 chr5 3250826 3251613 -149285646 - Lx5 LINE L1 -268 6790 5917 3 609 3020 9 3 0 chr5 3251614 3251935 -149285324 - RLTRETN_Mm LTR ERVK 0 322 1 3 609 42676 23 1 6 chr5 3251935 3256804 -149280455 - MMETn-int LTR ERVK 0 4844 1 3 609 2984 12 3 0 chr5 3256805 3257125 -149280134 - RLTRETN_Mm LTR ERVK -1 321 1 3 609 754 144 2 0 chr5 3257125 3257259 -149280000 - Lx5 LINE L1 -1129 5921 5786 3 609 2528 176 81 21 chr5 3257259 3257686 -149279573 + RLTR20B2 LTR ERVK 1 464 -96 3 609 423 0 0 0 chr5 3257686 3257733 -149279526 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 609 2528 176 81 21 chr5 3257733 3257833 -149279426 + RLTR20B2 LTR ERVK 465 560 0 3 609 1464 139 13 4 chr5 3257833 3258064 -149279195 - Lx5 LINE L1 -89 5788 5556 3 609 953 179 7 0 chr5 3258218 3258363 -149278896 + B1_Mur3 SINE Alu 2 147 -2 3 609 2675 256 70 39 chr5 3258738 3259608 -149277651 + RCHARR1 DNA MER1_type 4 900 -74 3 609 314 98 0 19 chr5 3260069 3260121 -149277138 + (CCCCCT)n Simple_repeat Simple_repeat 6 56 0 3 609 333 102 0 0 chr5 3260123 3260182 -149277077 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 609 279 0 0 0 chr5 3261749 3261780 -149275479 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 609 757 262 157 13 chr5 3261889 3262125 -149275134 - B4 SINE B4 -19 273 4 3 609 1786 169 134 110 chr5 3262167 3262613 -149274646 + MT2A LTR ERVL 4 460 -73 3 609 905 9 18 0 chr5 3262629 3262738 -149274521 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 3 609 1217 243 106 25 chr5 3262775 3263096 -149274163 + Lx8 LINE L1 6347 6693 -780 3 609 504 347 32 14 chr5 3263135 3263351 -149273908 + Lx8 LINE L1 7041 7260 -213 3 609 195 42 0 0 chr5 3263372 3263396 -149273863 + (T)n Simple_repeat Simple_repeat 1 24 0 3 609 1088 116 0 20 chr5 3263396 3263546 -149273713 - B1_Mm SINE Alu 0 147 1 3 609 2034 171 47 32 chr5 3263546 3263931 -149273328 - MTD LTR MaLR -6 413 19 3 609 4699 60 6 0 chr5 3263931 3264481 -149272778 + L1_Mus2 LINE L1 6008 6560 -6 3 609 2034 171 47 32 chr5 3264481 3264500 -149272759 - MTD LTR MaLR -401 18 3 3 609 2129 236 83 9 chr5 3265867 3266410 -149270849 + Lx6 LINE L1 6877 7459 -1 3 609 613 242 8 0 chr5 3266949 3267077 -149270182 + ID_B1 SINE B4 82 210 -14 3 609 606 0 0 0 chr5 3267929 3267998 -149269261 - MTB LTR MaLR 0 400 332 3 609 369 324 55 50 chr5 3268572 3268754 -149268505 + B4 SINE B4 11 193 -99 3 609 405 0 0 0 chr5 3270227 3270272 -149266987 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 609 204 97 0 0 chr5 3270872 3270903 -149266356 + (TTG)n Simple_repeat Simple_repeat 1 31 0 3 609 957 119 20 20 chr5 3270933 3271079 -149266180 - B1_Mur4 SINE Alu -4 146 1 3 609 837 286 5 14 chr5 3271105 3271314 -149265945 - ID_B1 SINE B4 -17 207 1 3 609 450 0 0 0 chr5 3271332 3271382 -149265877 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 609 189 0 0 0 chr5 3271903 3271924 -149265335 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 609 312 360 35 21 chr5 3272002 3272242 -149265017 - B4A SINE B4 -8 284 1 3 609 441 366 38 36 chr5 3272472 3272851 -149264408 - LTR16D1 LTR ERVL -9 642 192 3 609 222 269 0 19 chr5 3272962 3273015 -149264244 + polypyrimidine Low_complexity Low_complexity 4 55 0 3 609 2630 120 133 25 chr5 3274428 3274863 -149262396 - RLTR45 LTR ERVK 0 482 1 3 609 7788 160 13 17 chr5 3274863 3276376 -149260883 - RLTR45-int LTR ERVK -413 7804 6331 3 609 2644 60 18 6 chr5 3276359 3276692 -149260567 - RLTR45-int LTR ERVK -5596 1648 1312 3 610 738 124 0 0 chr5 3277463 3277584 -149259675 - RLTR45-int LTR ERVK -6211 1033 913 3 610 1811 64 0 0 chr5 3277708 3277927 -149259332 - RLTR45-int LTR ERVK -6334 910 692 3 610 4942 57 68 5 chr5 3278283 3278934 -149258325 - RLTR45-int LTR ERVK -6552 692 1 3 610 2670 125 35 85 chr5 3278934 3279441 -149257818 - RLTR45 LTR ERVK 0 482 1 3 610 1277 121 21 0 chr5 3279735 3279925 -149257334 + B2_Mm2 SINE B2 2 195 0 3 610 245 352 33 16 chr5 3280000 3280141 -149257118 - MIRb SINE MIR -130 146 2 3 610 646 214 48 155 chr5 3280155 3280426 -149256833 + L1MA7 LINE L1 5710 5951 -340 3 610 490 155 8 142 chr5 3280417 3280537 -149256722 + RMER1C Other Other 1111 1214 -128 3 610 276 170 0 0 chr5 3280537 3280590 -149256669 + CT-rich Low_complexity Low_complexity 3 55 0 3 610 652 214 15 0 chr5 3280608 3280739 -149256520 + RMER1C Other Other 1207 1339 -3 3 610 586 280 94 52 chr5 3280747 3281075 -149256184 + L1MA7 LINE L1 5950 6291 0 3 610 447 274 8 0 chr5 3281092 3281209 -149256050 + ID_B1 SINE B4 96 213 -11 3 610 2267 142 32 15 chr5 3281387 3281793 -149255466 - MTC LTR MaLR -8 413 1 3 610 204 97 0 0 chr5 3282851 3282882 -149254377 + (GGA)n Simple_repeat Simple_repeat 3 33 0 3 610 483 311 79 66 chr5 3283020 3283197 -149254062 - L1MA9 LINE L1 -49 6263 6086 3 610 955 168 81 5 chr5 3283197 3283395 -149253864 - B3 SINE B2 -2 214 2 3 610 483 311 79 66 chr5 3283395 3283650 -149253609 - L1MA9 LINE L1 -227 6085 5824 3 610 1004 146 8 0 chr5 3283650 3283826 -149253433 + CT-rich Low_complexity Low_complexity 1 181 -75 3 610 1004 146 8 0 chr5 3283833 3283904 -149253355 + CT-rich Low_complexity Low_complexity 182 256 0 3 610 666 344 54 0 chr5 3283950 3284226 -149253033 - B4A SINE B4 -1 291 1 3 610 1363 211 80 12 chr5 3284332 3284668 -149252591 - ORR1D2 LTR MaLR -8 362 4 3 610 343 229 36 0 chr5 3284677 3284760 -149252499 - L1MA9 LINE L1 -584 5728 5643 3 610 616 291 103 65 chr5 3284811 3285510 -149251749 - L1MA9 LINE L1 -971 5169 4444 3 610 1052 69 14 0 chr5 3285510 3285645 -149251614 + B1_Mus2 SINE Alu 1 137 -10 3 610 264 30 0 0 chr5 3285645 3285678 -149251581 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 610 616 291 103 65 chr5 3285687 3285737 -149251522 - L1MA9 LINE L1 -1697 4443 4393 3 610 399 21 0 0 chr5 3286095 3286143 -149251116 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 610 26 0 0 0 chr5 3286574 3286600 -149250659 + AT_rich Low_complexity Low_complexity 1 26 0 3 610 219 351 40 26 chr5 3286605 3286642 -149250617 - RSINE1 SINE B4 -10 155 2 3 610 460 254 9 9 chr5 3286642 3286757 -149250502 - B3A SINE B2 -83 115 1 3 610 233 246 0 0 chr5 3286771 3286836 -149250423 - L1MC LINE L1 -1954 4192 4128 3 610 477 0 0 0 chr5 3287329 3287382 -149249877 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 610 223 400 0 8 chr5 3287474 3287600 -149249659 - MIRb SINE MIR -116 152 28 3 610 306 50 0 0 chr5 3287646 3287686 -149249573 + (TTGG)n Simple_repeat Simple_repeat 4 43 0 3 610 459 0 0 0 chr5 3287790 3287841 -149249418 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 610 333 0 0 0 chr5 3287841 3287877 -149249382 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 610 228 67 0 0 chr5 3289736 3289766 -149247493 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 3 610 396 0 0 0 chr5 3290757 3290801 -149246458 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 610 28 29 0 0 chr5 3290942 3290977 -149246282 + AT_rich Low_complexity Low_complexity 1 35 0 3 610 211 211 0 0 chr5 3291469 3291507 -149245752 - B3A SINE B2 -68 130 93 3 610 1724 165 2 80 chr5 3291509 3291945 -149245314 + RMER17C LTR ERVK 1 402 -8 3 610 390 206 43 0 chr5 3291950 3292042 -149245217 - B3A SINE B2 -101 97 2 3 610 345 224 161 108 chr5 3292693 3292711 -149244548 - ID_B1 SINE B4 -4 220 206 3 610 1357 168 61 157 chr5 3292711 3293120 -149244139 - ORR1D1 LTR MaLR 0 374 5 3 610 345 224 161 108 chr5 3293120 3293231 -149244028 - ID_B1 SINE B4 -19 205 84 3 610 516 16 0 0 chr5 3293250 3293311 -149243948 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 610 2527 192 54 19 chr5 3293311 3293662 -149243597 - L1_Mur3 LINE L1 -3823 2057 1694 4 610 225 0 0 0 chr5 3293662 3293687 -149243572 + (TTG)n Simple_repeat Simple_repeat 3 27 0 4 610 2527 192 54 19 chr5 3293687 3293779 -149243480 - L1_Mur3 LINE L1 -4187 1693 1592 4 610 1875 148 109 27 chr5 3293779 3294190 -149243069 + BGLII_A LTR ERVK 1 445 0 4 610 2527 192 54 19 chr5 3294190 3294371 -149242888 - L1_Mur3 LINE L1 -4289 1591 1413 4 610 259 231 151 21 chr5 3294616 3294802 -149242457 + Charlie1a DNA MER1_type 1204 1413 -42 4 610 396 226 359 0 chr5 3294957 3295116 -149242143 + B3 SINE B2 1 216 0 4 610 459 248 84 15 chr5 3295395 3295617 -149241642 - L1MC LINE L1 -921 5423 5188 4 610 1091 231 10 0 chr5 3295665 3295873 -149241386 + B3 SINE B2 1 210 -6 4 610 274 279 121 23 chr5 3295886 3296018 -149241241 - L1MC LINE L1 -1073 5073 4929 4 610 658 314 94 56 chr5 3296010 3296084 -149241175 + L1MC2 LINE L1 5520 5582 -762 4 610 1089 89 0 7 chr5 3296084 3296231 -149241028 - B1_Mus1 SINE Alu -1 147 2 4 610 658 314 94 56 chr5 3296231 3296602 -149240657 + L1MC2 LINE L1 5583 5982 -362 4 610 1450 317 41 16 chr5 3296607 3297095 -149240164 - MLT2B2 LTR ERVL -8 507 8 4 610 432 270 189 18 chr5 3297105 3297402 -149239857 + L1MC2 LINE L1 5989 6335 -9 4 610 2679 226 25 5 chr5 3297498 3298058 -149239201 + Lx5 LINE L1 6477 7047 -3 4 610 449 290 7 84 chr5 3298105 3298248 -149239011 + RSINE1 SINE B4 3 134 -31 4 610 1734 157 122 15 chr5 3298437 3298780 -149238479 - ORR1C2 LTR MaLR 0 384 5 4 610 447 284 42 62 chr5 3298811 3299051 -149238208 + L1M5 LINE L1 5333 5567 -606 4 610 544 288 45 54 chr5 3299063 3299305 -149237954 - RMER15 LTR ERVL -27 548 309 4 610 1218 54 0 0 chr5 3300553 3300700 -149236559 + B1_Mus1 SINE Alu 2 148 0 4 610 1266 285 154 46 chr5 3302134 3302349 -149234910 - L1M3b LINE L1 -1506 4838 4582 4 610 436 30 0 43 chr5 3302349 3302419 -149234840 + Lx LINE L1 6588 6654 0 4 610 1266 285 154 46 chr5 3302419 3302495 -149234764 - L1M3b LINE L1 -1763 4581 4512 4 610 2984 77 2 18 chr5 3302495 3302894 -149234365 - L1_Mus2 LINE L1 0 6566 6174 4 610 1266 285 154 46 chr5 3302894 3303261 -149233998 - L1M3b LINE L1 -1833 4511 4086 4 610 571 281 99 87 chr5 3303261 3303616 -149233643 + ORR1E LTR MaLR 1 359 0 4 610 1266 285 154 46 chr5 3303616 3303894 -149233365 - L1M3b LINE L1 -2259 4085 3799 4 610 811 265 54 9 chr5 3303895 3304116 -149233143 - B4A SINE B4 -61 231 1 4 610 1533 218 55 20 chr5 3304163 3304566 -149232693 + MTD LTR MaLR 1 417 -2 4 610 1338 271 127 41 chr5 3304566 3305364 -149231895 - L1M3b LINE L1 -2906 3441 2576 4 610 409 228 83 50 chr5 3305364 3305544 -149231715 - B2_Mm2 SINE B2 -8 187 2 4 610 532 341 80 10 chr5 3305672 3305971 -149231288 - L1M3b LINE L1 -5004 1277 958 4 610 902 254 148 52 chr5 3306218 3306733 -149230526 - L1M3b LINE L1 -5715 566 3 4 610 3763 38 63 0 chr5 3306753 3307200 -149230059 + MT2C_Mm LTR ERVL 1 475 0 4 610 1621 151 34 37 chr5 3307527 3307936 -149229323 + RMER17C LTR ERVK 14 410 0 4 610 299 221 29 29 chr5 3308084 3308154 -149229105 - ID4_ SINE ID -13 70 1 4 610 22 35 0 0 chr5 3308393 3308422 -149228837 + AT_rich Low_complexity Low_complexity 1 29 0 4 610 1124 82 0 0 chr5 3309031 3309177 -149228082 + B1_Mus1 SINE Alu 2 147 -1 4 610 382 240 0 20 chr5 3309950 3310048 -149227211 + L1MA9 LINE L1 6179 6274 -38 4 610 2125 116 25 0 chr5 3310053 3310371 -149226888 - ORR1A4 LTR MaLR -3 326 1 4 610 261 0 0 0 chr5 3310948 3310977 -149226282 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 610 1470 59 5 21 chr5 3311123 3311314 -149225945 - B2_Mm1a SINE B2 -5 188 1 4 610 555 344 6 12 chr5 3311808 3311973 -149225286 + RSINE1 SINE B4 2 165 0 4 610 207 186 33 17 chr5 3313127 3313187 -149224072 + (TTTG)n Simple_repeat Simple_repeat 1 61 0 4 610 791 200 0 0 chr5 3313188 3313328 -149223931 - B1_Mus1 SINE Alu -2 146 7 4 610 529 248 13 27 chr5 3313348 3313497 -149223762 - B3 SINE B2 0 216 70 4 610 182 37 37 0 chr5 3314297 3314324 -149222935 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 610 214 281 31 15 chr5 3314441 3314506 -149222753 - ID4 SINE ID -13 70 5 4 610 685 237 11 58 chr5 3314722 3314910 -149222349 - Lx6 LINE L1 -606 6854 6676 4 610 295 260 56 28 chr5 3314910 3315017 -149222242 - B4A SINE B4 -182 110 1 4 610 446 250 162 75 chr5 3315313 3315453 -149221806 + B4A SINE B4 43 210 -82 4 610 1139 38 0 0 chr5 3315453 3315585 -149221674 + B1_Mus2 SINE Alu 2 133 -14 4 610 1223 113 42 21 chr5 3315592 3315782 -149221477 + B2_Mm2 SINE B2 2 195 0 4 610 446 250 162 75 chr5 3315782 3315806 -149221453 + B4A SINE B4 211 230 -62 4 610 548 286 18 30 chr5 3315806 3315972 -149221287 + RSINE1 SINE B4 2 165 0 4 610 192 40 0 0 chr5 3316265 3316290 -149220969 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 610 1001 123 6 6 chr5 3316824 3316987 -149220272 + B2_Mm2 SINE B2 15 177 -18 4 610 433 181 207 0 chr5 3317120 3317236 -149220023 + B1F SINE Alu 10 149 0 4 610 1612 27 0 16 chr5 3317567 3317756 -149219503 - B2_Mm1a SINE B2 -6 187 2 4 610 1021 212 14 5 chr5 3318071 3318284 -149218975 - B3 SINE B2 0 216 2 4 610 818 268 71 8 chr5 3318485 3318752 -149218507 - B4A SINE B4 -7 285 2 4 610 264 281 205 19 chr5 3318770 3318926 -149218333 + MER5A DNA MER1_type 1 185 -4 4 610 574 233 19 52 chr5 3318967 3319121 -149218138 - B1_Mur1 SINE Alu 0 149 1 4 610 1303 157 14 0 chr5 3319970 3320187 -149217072 + URR1B DNA MER1_type 2 221 -4 4 610 677 279 81 45 chr5 3320954 3321317 -149215942 + MTEb LTR MaLR 1 370 0 4 610 1023 212 15 0 chr5 3321368 3321571 -149215688 + B3 SINE B2 1 206 -10 4 610 30 0 0 0 chr5 3321571 3321601 -149215658 + AT_rich Low_complexity Low_complexity 1 30 0 4 610 431 265 43 22 chr5 3321763 3321902 -149215357 - B1F SINE Alu -2 147 6 4 610 763 117 0 0 chr5 3322678 3322789 -149214470 - B2_Mm2 SINE B2 -84 111 1 4 610 198 0 0 0 chr5 3323831 3323853 -149213406 + (GA)n Simple_repeat Simple_repeat 1 22 0 4 610 2809 163 51 11 chr5 3323926 3324479 -149212780 - RMER15 LTR ERVL 0 575 1 4 610 720 163 102 15 chr5 3324746 3324883 -149212376 + B1_Mur3 SINE Alu 1 149 0 4 610 285 325 0 0 chr5 3326682 3326765 -149210494 + (TG)n Simple_repeat Simple_repeat 1 83 0 4 610 305 297 77 82 chr5 3326786 3327006 -149210253 - B4A SINE B4 0 292 74 4 610 1094 88 0 26 chr5 3328325 3328339 -149208920 - B1_Mus1 SINE Alu 0 148 138 4 610 248 0 31 0 chr5 3328339 3328371 -149208888 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 610 1094 88 0 26 chr5 3328371 3328508 -149208751 - B1_Mus1 SINE Alu -11 137 1 4 610 453 321 78 55 chr5 3328908 3329165 -149208094 + B4A SINE B4 30 292 0 4 610 213 132 0 0 chr5 3329869 3329907 -149207352 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 4 610 381 249 125 57 chr5 3330073 3330265 -149206994 - MIR SINE MIR -22 240 36 4 610 1195 61 0 0 chr5 3330363 3330510 -149206749 - B1_Mus1 SINE Alu 0 148 2 4 610 369 284 92 44 chr5 3330831 3331037 -149206222 - L2a LINE L2 0 3426 3211 4 610 213 295 26 0 chr5 3331266 3331344 -149205915 - L2a LINE L2 -342 3077 2998 4 610 657 254 90 14 chr5 3331959 3332308 -149204951 + MTD LTR MaLR 18 404 -15 4 610 261 241 0 0 chr5 3332687 3332745 -149204514 + ID2 SINE ID 2 59 -24 4 610 2219 129 67 8 chr5 3334052 3334442 -149202817 + MTC LTR MaLR 1 413 -8 4 610 21 0 0 0 chr5 3340022 3340043 -149197216 + AT_rich Low_complexity Low_complexity 1 21 0 4 610 292 227 40 0 chr5 3345120 3345195 -149192064 + PB1D10 SINE Alu 34 111 -6 4 610 250 98 39 0 chr5 3345849 3345900 -149191359 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 4 610 266 0 29 0 chr5 3345918 3345952 -149191307 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 610 252 0 0 0 chr5 3346155 3346183 -149191076 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 4 610 1876 169 104 20 chr5 3346819 3347261 -149189998 - RMER15 LTR ERVL -96 479 1 4 610 617 181 64 21 chr5 3348223 3348364 -149188895 - B1_Mus2 SINE Alu 0 147 1 4 610 22 35 0 0 chr5 3348375 3348404 -149188855 + AT_rich Low_complexity Low_complexity 1 29 0 4 610 459 244 73 0 chr5 3348414 3348537 -149188722 + ID_B1 SINE B4 81 212 -12 4 610 384 169 0 13 chr5 3350153 3350231 -149187028 - B3 SINE B2 -111 105 29 4 610 298 287 51 25 chr5 3351212 3351330 -149185929 + MIR SINE MIR 27 147 -61 4 610 328 225 111 11 chr5 3351824 3351914 -149185345 - RSINE1 SINE B4 -30 135 37 4 610 732 246 44 29 chr5 3352367 3352572 -149184687 - B3 SINE B2 -8 208 1 4 610 204 122 0 0 chr5 3352646 3352687 -149184572 + (T)n Simple_repeat Simple_repeat 1 41 0 4 610 458 248 136 14 chr5 3353129 3353276 -149183983 + ID_B1 SINE B4 45 209 -15 4 610 237 240 100 0 chr5 3353743 3353843 -149183416 - L1MEc LINE L1 -3160 3159 3050 4 610 41 21 0 0 chr5 3354025 3354073 -149183186 + AT_rich Low_complexity Low_complexity 1 48 0 4 610 226 278 91 45 chr5 3354099 3354231 -149183028 - L1MEc LINE L1 -5487 913 776 4 610 393 22 0 0 chr5 3354259 3354305 -149182954 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 610 527 291 128 24 chr5 3354409 3354659 -149182600 - B4A SINE B4 -11 281 6 4 610 360 184 0 84 chr5 3357719 3357802 -149179457 + B2_Mm2 SINE B2 2 77 -118 4 610 279 79 0 0 chr5 3357848 3357886 -149179373 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 610 271 281 88 22 chr5 3357930 3358021 -149179238 + PB1D9 SINE Alu 3 99 -21 4 610 842 95 8 0 chr5 3359493 3359619 -149177640 + (GAGAA)n Simple_repeat Simple_repeat 4 130 0 4 610 1248 258 13 47 chr5 3359893 3360279 -149176980 - MTE2a LTR MaLR -2 377 5 4 610 271 308 23 12 chr5 3362837 3363008 -149174251 + (CCCTAA)n Simple_repeat Simple_repeat 6 178 0 4 610 387 0 0 0 chr5 3363116 3363159 -149174100 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 610 225 286 32 0 chr5 3364535 3364598 -149172661 + MER20 DNA MER1_type 1 65 -154 4 610 558 190 0 0 chr5 3364978 3365094 -149172165 + (CTG)n Simple_repeat Simple_repeat 1 116 0 5 610 555 270 73 32 chr5 3365404 3365622 -149171637 - B4A SINE B4 -61 231 5 5 610 560 84 12 0 chr5 3365642 3365725 -149171534 + (TG)n Simple_repeat Simple_repeat 2 85 0 5 610 1032 98 37 0 chr5 3366282 3366445 -149170814 + B2_Mm2 SINE B2 1 169 -26 5 610 567 271 198 8 chr5 3366649 3366891 -149170368 - B4A SINE B4 -2 290 3 5 610 290 308 121 55 chr5 3367104 3367286 -149169973 + MER20 DNA MER1_type 26 219 0 4 610 1363 76 11 0 chr5 3367565 3367750 -149169509 - B2_Mm1t SINE B2 -6 187 1 5 610 1268 199 28 31 chr5 3368110 3368396 -149168863 + MTD LTR MaLR 12 296 -123 5 610 669 86 0 0 chr5 3368737 3368830 -149168429 + (TC)n Simple_repeat Simple_repeat 2 94 0 5 610 1050 98 0 0 chr5 3368830 3368973 -149168286 - B1_Mus1 SINE Alu -5 143 1 5 610 399 157 0 0 chr5 3369653 3369723 -149167536 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 5 610 216 268 0 0 chr5 3369915 3369997 -149167262 + T-rich Low_complexity Low_complexity 5 86 0 5 610 736 255 83 53 chr5 3370106 3370544 -149166715 + RLTR11B LTR ERVK 2 462 -65 5 610 898 301 38 52 chr5 3370700 3371100 -149166159 - Lx9 LINE L1 -150 7494 7101 5 610 1248 88 26 47 chr5 3371643 3371834 -149165425 + B2_Mm2 SINE B2 1 187 -8 5 610 434 111 37 12 chr5 3371838 3371920 -149165339 + B2_Mm2 SINE B2 107 190 -5 5 610 476 185 0 0 chr5 3372943 3373024 -149164235 + B1_Mur1 SINE Alu 60 140 -9 5 610 408 20 0 0 chr5 3373073 3373122 -149164137 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 610 343 311 103 22 chr5 3374558 3374742 -149162517 + MARNA DNA Mariner 107 305 -281 5 610 202 171 67 67 chr5 3374755 3374830 -149162429 - L3 LINE CR1 -65 4424 4350 5 610 534 260 129 25 chr5 3375115 3375316 -149161943 - L1MB8 LINE L1 -41 6137 5916 5 610 232 128 26 0 chr5 3375411 3375450 -149161809 - L1M4 LINE L1 -1188 4958 4919 5 610 217 371 72 24 chr5 3376145 3376352 -149160907 + L2c LINE L2 2926 3142 -245 5 610 1994 45 0 8 chr5 3376497 3376862 -149160397 - L1_Mus1 LINE L1 0 6567 6319 5 610 209 42 0 78 chr5 3377221 3377272 -149159987 + (CCCCCA)n Simple_repeat Simple_repeat 6 52 0 5 610 515 307 7 0 chr5 3379101 3379238 -149158021 - B4 SINE B4 -72 220 83 5 610 22 35 0 0 chr5 3379245 3379274 -149157985 + AT_rich Low_complexity Low_complexity 1 29 0 5 610 216 178 89 109 chr5 3379330 3379431 -149157828 - RSINE1 SINE B4 -50 115 17 5 610 321 26 0 0 chr5 3379510 3379548 -149157711 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 5 610 22 0 0 0 chr5 3379694 3379716 -149157543 + AT_rich Low_complexity Low_complexity 1 22 0 5 610 810 193 13 27 chr5 3379813 3379962 -149157297 - B1_Mur3 SINE Alu 0 149 3 5 610 21 57 0 0 chr5 3379986 3380021 -149157238 + AT_rich Low_complexity Low_complexity 1 35 0 5 610 607 242 65 0 chr5 3380087 3380240 -149157019 + B3 SINE B2 44 206 -10 5 610 321 26 0 0 chr5 3380487 3380525 -149156734 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 610 244 165 62 25 chr5 3381324 3381486 -149155773 + (TG)n Simple_repeat Simple_repeat 2 169 0 5 610 429 102 71 18 chr5 3381508 3381677 -149155582 + (TG)n Simple_repeat Simple_repeat 2 179 0 5 610 945 281 71 31 chr5 3381840 3382289 -149154970 - L1MB7 LINE L1 -10 6174 5708 5 610 214 343 0 29 chr5 3382535 3382604 -149154655 - L2b LINE L2 -1 3374 3308 5 610 280 265 58 94 chr5 3384151 3384322 -149152937 - ID_B1 SINE B4 -31 193 29 5 610 2118 265 34 132 chr5 3384486 3385564 -149151695 - RCHARR1 DNA MER1_type 0 974 2 5 610 625 253 56 20 chr5 3387152 3387350 -149149909 - B3 SINE B2 -11 205 1 5 610 186 189 0 0 chr5 3387634 3387671 -149149588 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 5 610 551 174 0 27 chr5 3387948 3388096 -149149163 + (TA)n Simple_repeat Simple_repeat 1 144 0 5 610 806 240 99 0 chr5 3388391 3388583 -149148676 + B3 SINE B2 1 211 -5 5 610 414 39 0 0 chr5 3388991 3389043 -149148216 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 610 184 183 43 130 chr5 3391291 3391360 -149145899 - L2c LINE L2 -46 3341 3279 5 610 500 257 9 0 chr5 3391937 3392050 -149145209 - B1_Mur3 SINE Alu -5 144 31 5 610 526 297 92 111 chr5 3392304 3392664 -149144595 + ORR1E LTR MaLR 1 353 -6 5 610 373 216 0 98 chr5 3393154 3393277 -149143982 + MT2B LTR ERVL 154 264 -337 5 610 792 129 14 54 chr5 3393171 3393319 -149143940 + B1_Mus1 SINE Alu 7 148 0 5 610 201 147 0 0 chr5 3394066 3394100 -149143159 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 610 594 296 40 94 chr5 3397356 3397632 -149139627 + B4 SINE B4 2 262 -30 5 610 357 24 0 0 chr5 3397652 3397694 -149139565 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 610 220 306 0 44 chr5 3397854 3397967 -149139292 + L2 LINE L2 2783 2890 -529 5 610 290 343 29 0 chr5 3398161 3398266 -149138993 + PB1D10 SINE Alu 7 114 -3 5 610 539 262 24 8 chr5 3398466 3398589 -149138670 - B1_Mur3 SINE Alu -23 126 2 5 610 183 100 0 0 chr5 3399075 3399105 -149138154 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 5 610 641 228 8 0 chr5 3400657 3400784 -149136475 + B1_Mur3 SINE Alu 1 128 -21 5 610 1389 70 0 0 chr5 3403132 3403390 -149133869 + (TGGA)n Simple_repeat Simple_repeat 1 258 0 5 610 291 161 0 0 chr5 3403808 3403864 -149133395 + C-rich Low_complexity Low_complexity 3 58 0 5 610 456 261 0 9 chr5 3404388 3404504 -149132755 - B1_Mur1 SINE Alu -24 125 11 5 610 269 289 23 62 chr5 3404392 3404521 -149132738 - ID_B1 SINE B4 -25 199 76 5 610 336 268 0 11 chr5 3406669 3406756 -149130503 + RSINE1 SINE B4 68 153 -12 5 611 23 33 0 0 chr5 3408680 3408710 -149128549 + AT_rich Low_complexity Low_complexity 1 30 0 5 611 2167 179 54 11 chr5 3409090 3409553 -149127706 - Lx4B LINE L1 -2 7056 6574 5 611 1089 125 0 0 chr5 3410316 3410484 -149126775 - B2_Mm2 SINE B2 -27 168 1 5 611 257 182 0 0 chr5 3411283 3411327 -149125932 + MIRc SINE MIR 96 139 -129 5 611 226 257 26 51 chr5 3412915 3412993 -149124266 + ID4_ SINE ID 2 77 -6 5 611 1715 264 41 11 chr5 3413129 3413597 -149123662 + Lx6 LINE L1 6977 7458 -2 5 611 1193 55 7 0 chr5 3413910 3414055 -149123204 + B1_Mm SINE Alu 2 147 0 5 611 201 39 0 0 chr5 3414059 3414085 -149123174 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 611 616 153 145 0 chr5 3414322 3414446 -149122813 + B1_Mus1 SINE Alu 5 146 -2 5 611 258 32 0 0 chr5 3414446 3414477 -149122782 + (GGGGA)n Simple_repeat Simple_repeat 2 32 0 5 611 307 188 106 0 chr5 3414491 3414576 -149122683 + B3A SINE B2 1 94 -104 5 611 2343 52 3 0 chr5 3414600 3414889 -149122370 - L1_Mus1 LINE L1 0 6567 6278 5 611 709 255 55 5 chr5 3415064 3415265 -149121994 + B3 SINE B2 1 211 -5 5 611 817 247 162 44 chr5 3416355 3416626 -149120633 + Lx8 LINE L1 7171 7473 0 5 611 379 242 21 21 chr5 3417269 3417366 -149119893 - B1F SINE Alu -39 110 14 5 611 24 53 0 0 chr5 3419723 3419761 -149117498 + AT_rich Low_complexity Low_complexity 1 38 0 5 611 486 49 0 0 chr5 3419785 3419846 -149117413 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 5 611 22 0 0 0 chr5 3420875 3420897 -149116362 + AT_rich Low_complexity Low_complexity 1 22 0 5 611 5938 50 13 23 chr5 3421203 3421956 -149115303 + L1_Mus1 LINE L1 5822 6567 0 5 611 324 208 211 53 chr5 3422365 3422634 -149114625 + L1MB2 LINE L1 5620 5939 -232 5 611 241 275 200 0 chr5 3423076 3423156 -149114103 - PB1D10 SINE Alu -21 96 1 5 611 407 43 42 14 chr5 3423324 3423395 -149113864 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 611 875 161 0 0 chr5 3424214 3424351 -149112908 - B1_Mus2 SINE Alu -10 137 1 5 611 240 86 0 0 chr5 3424486 3424521 -149112738 - URR1B DNA MER1_type 0 225 191 5 611 469 314 35 34 chr5 3424530 3424969 -149112290 + RLTR15 LTR ERVK 10 317 -42 5 611 646 181 169 36 chr5 3424996 3425162 -149112097 - URR1B DNA MER1_type -37 188 1 5 611 421 187 43 11 chr5 3425453 3425545 -149111714 - RSINE1 SINE B4 -55 110 16 5 611 769 232 145 67 chr5 3426832 3427114 -149110145 - MTEa-int LTR MaLR -34 1546 1243 5 611 1526 315 116 78 chr5 3427117 3428133 -149109126 - MTEa-int LTR MaLR -524 1056 2 5 611 383 269 68 25 chr5 3428133 3428296 -149108963 - MTEa LTR MaLR -16 403 243 5 611 207 0 0 0 chr5 3432070 3432093 -149105166 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 611 196 289 94 19 chr5 3432556 3432662 -149104597 - MIRm SINE MIR -3 273 160 5 611 317 252 97 106 chr5 3435953 3436397 -149100862 + RMER1C Other Other 400 839 -503 5 611 285 266 102 110 chr5 3436599 3437110 -149100149 + RMER1C Other Other 369 875 -467 5 611 227 259 97 71 chr5 3437118 3437272 -149099987 + RMER1C Other Other 438 595 -747 5 611 267 266 108 97 chr5 3437352 3437785 -149099474 + RMER1C Other Other 380 817 -525 5 611 243 286 114 85 chr5 3438139 3438552 -149098707 + RMER1C Other Other 393 817 -525 5 611 197 281 15 15 chr5 3439564 3439629 -149097630 + L2b LINE L2 3304 3368 -7 5 611 494 219 392 13 chr5 3440232 3440385 -149096874 + B3 SINE B2 2 212 -4 5 611 471 18 0 0 chr5 3440933 3440989 -149096270 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 611 543 31 0 0 chr5 3442118 3442183 -149095076 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 611 615 192 111 37 chr5 3443014 3443149 -149094110 - B1_Mur1 SINE Alu 0 149 5 5 611 504 0 0 0 chr5 3443195 3443251 -149094008 + (GA)n Simple_repeat Simple_repeat 1 56 0 6 611 32 0 0 0 chr5 3443560 3443592 -149093667 + AT_rich Low_complexity Low_complexity 1 32 0 6 611 406 286 26 18 chr5 3443612 3443726 -149093533 - RSINE1 SINE B4 -40 125 11 6 611 995 187 27 0 chr5 3444189 3444376 -149092883 - B2_Mm2 SINE B2 -3 192 1 6 611 446 0 19 0 chr5 3444810 3444864 -149092395 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 611 239 328 104 7 chr5 3445881 3446016 -149091243 + L1MEe LINE L1 264 411 -4443 6 611 389 318 78 66 chr5 3446160 3446512 -149090747 + L1ME3B LINE L1 5535 5892 -348 6 611 195 129 0 0 chr5 3447558 3447589 -149089670 + (ATG)n Simple_repeat Simple_repeat 2 32 0 6 611 432 279 56 12 chr5 3448030 3448190 -149089069 + MER20 DNA MER1_type 52 218 -1 6 611 587 311 123 22 chr5 3448224 3448500 -149088759 + Arthur1 DNA Tip100 368 671 -3276 6 611 405 256 41 88 chr5 3448568 3448739 -149088520 + RSINE1 SINE B4 3 165 0 6 611 214 217 87 87 chr5 3449987 3450113 -149087146 - MIR SINE MIR -90 172 47 6 611 287 355 0 11 chr5 3452082 3452183 -149085076 - PB1D7 SINE Alu -6 114 15 6 611 215 214 0 0 chr5 3452687 3452729 -149084530 + (TTG)n Simple_repeat Simple_repeat 2 43 0 6 611 588 40 0 0 chr5 3452756 3452831 -149084428 + (TGGA)n Simple_repeat Simple_repeat 3 77 0 6 611 528 212 35 0 chr5 3452858 3452971 -149084288 - RSINE1 SINE B4 -46 119 3 6 611 240 111 0 0 chr5 3454989 3455034 -149082225 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 6 611 626 225 8 0 chr5 3455496 3455625 -149081634 - B1_Mur3 SINE Alu -9 140 11 6 611 275 104 21 0 chr5 3455894 3455942 -149081317 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 611 21 0 0 0 chr5 3456342 3456363 -149080896 + AT_rich Low_complexity Low_complexity 1 21 0 6 611 282 116 0 0 chr5 3456673 3456716 -149080543 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 611 24 0 0 0 chr5 3456810 3456834 -149080425 + AT_rich Low_complexity Low_complexity 1 24 0 6 611 282 193 0 0 chr5 3456975 3457032 -149080227 + GA-rich Low_complexity Low_complexity 3 59 0 6 611 243 242 178 7 chr5 3457062 3457202 -149080057 + B3A SINE B2 2 171 -45 6 611 882 36 0 0 chr5 3457315 3457425 -149079834 + (TGG)n Simple_repeat Simple_repeat 3 112 0 6 611 486 33 0 0 chr5 3458459 3458519 -149078740 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 611 389 234 196 0 chr5 3459760 3459867 -149077392 - B1F2 SINE Alu -1 148 21 6 611 211 227 0 0 chr5 3460035 3460079 -149077180 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 611 237 283 117 97 chr5 3460225 3460534 -149076725 + ORR1D2 LTR MaLR 44 358 -12 6 611 203 196 20 0 chr5 3461900 3461951 -149075308 + (CAA)n Simple_repeat Simple_repeat 2 53 0 6 611 725 207 7 7 chr5 3461998 3462139 -149075120 + B1F2 SINE Alu 1 141 -8 6 611 697 90 0 18 chr5 3462525 3462638 -149074621 + (GAA)n Simple_repeat Simple_repeat 2 112 0 6 611 251 284 147 0 chr5 3462641 3462750 -149074509 - L3b LINE CR1 -132 350 226 6 611 2137 198 17 2 chr5 3464064 3464475 -149072784 - MTC LTR MaLR -4 417 1 6 611 362 38 0 19 chr5 3465360 3465413 -149071846 + (GTTTG)n Simple_repeat Simple_repeat 2 53 0 6 611 1432 65 38 0 chr5 3468739 3468924 -149068335 - B2_Mm2 SINE B2 -2 193 2 6 611 225 0 0 0 chr5 3469420 3469445 -149067814 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 611 260 307 13 0 chr5 3469469 3469544 -149067715 + ID4_ SINE ID 8 83 0 6 611 1128 57 28 0 chr5 3470169 3470310 -149066949 + B1_Mm SINE Alu 1 145 -2 6 611 22 0 0 0 chr5 3470505 3470527 -149066732 + AT_rich Low_complexity Low_complexity 1 22 0 6 611 422 272 19 19 chr5 3471522 3471627 -149065632 - PB1D10 SINE Alu -9 108 4 6 611 318 257 159 56 chr5 3471854 3472068 -149065191 - MLT1G3 LTR MaLR -216 379 144 6 611 497 265 128 14 chr5 3474493 3474711 -149062548 - B4A SINE B4 -8 284 42 6 611 386 309 54 0 chr5 3474707 3474856 -149062403 + MER5A DNA MER1_type 8 164 -25 6 611 1145 65 0 0 chr5 3476324 3476463 -149060796 + B1_Mus2 SINE Alu 2 140 -7 6 611 636 81 0 0 chr5 3476463 3476550 -149060709 + (GGAA)n Simple_repeat Simple_repeat 3 89 0 6 611 1559 42 21 0 chr5 3476787 3476976 -149060283 + B2_Mm2 SINE B2 1 193 -2 6 611 250 292 21 43 chr5 3477216 3477309 -149059950 - MIRb SINE MIR -151 117 27 6 611 3402 40 0 0 chr5 3478685 3479087 -149058172 - L1Md_F2 LINE L1 -12 6570 6169 6 611 180 0 0 0 chr5 3479599 3479619 -149057640 + (TGG)n Simple_repeat Simple_repeat 3 22 0 6 611 1428 55 0 0 chr5 3479819 3480411 -149056848 + (CA)n Simple_repeat Simple_repeat 1 592 0 6 611 382 182 0 0 chr5 3480411 3480488 -149056771 - URR1B DNA MER1_type -63 162 86 6 611 488 265 120 52 chr5 3481872 3482063 -149055196 + B3 SINE B2 7 210 -6 6 611 393 22 0 0 chr5 3482930 3482976 -149054283 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 611 266 300 74 59 chr5 3483066 3483268 -149053991 - L1MC LINE L1 -2121 5761 5557 6 611 281 189 0 127 chr5 3483335 3483414 -149053845 + ID4_ SINE ID 1 69 -14 6 611 2899 46 0 0 chr5 3484100 3484446 -149052813 - ORR1A1 LTR MaLR 0 346 1 6 611 1704 246 87 37 chr5 3485063 3485224 -149052035 - RMER19B LTR ERVK 0 902 740 6 611 1267 34 0 0 chr5 3485224 3485371 -149051888 - B1_Mus1 SINE Alu -1 147 1 6 611 1704 246 87 37 chr5 3485371 3485775 -149051484 - RMER19B LTR ERVK -163 739 309 6 611 288 0 0 0 chr5 3485912 3485944 -149051315 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 611 207 0 0 0 chr5 3485944 3485966 -149051293 + (CG)n Simple_repeat Simple_repeat 1 23 0 6 611 554 246 38 15 chr5 3486809 3486941 -149050318 + RSINE1 SINE B4 3 137 -28 6 611 601 179 7 13 chr5 3488032 3488185 -149049074 + (TAGA)n Simple_repeat Simple_repeat 1 152 0 6 611 318 253 75 39 chr5 3488283 3488526 -149048733 + MLT1E2 LTR MaLR 310 619 -8 6 611 262 308 11 0 chr5 3489228 3489319 -149047940 + MIR SINE MIR 39 130 -132 6 611 969 258 54 123 chr5 3489665 3489741 -149047518 + L1_Mur3 LINE L1 3276 3336 -2544 6 611 603 144 261 0 chr5 3489741 3489852 -149047407 + B1_Mus1 SINE Alu 3 142 -6 6 611 969 258 54 123 chr5 3489852 3490194 -149047065 + L1_Mur3 LINE L1 3337 3661 -2219 6 611 675 0 0 0 chr5 3490194 3490269 -149046990 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 611 969 258 54 123 chr5 3490269 3490353 -149046906 + L1_Mur3 LINE L1 3662 3744 -2136 6 611 1129 82 0 0 chr5 3490862 3491009 -149046250 + B1_Mus2 SINE Alu 1 147 0 6 611 374 20 0 0 chr5 3491021 3491071 -149046188 + B1_Mus2 SINE Alu 27 76 -71 6 611 1363 101 16 0 chr5 3493285 3493474 -149043785 - B2_Mm2 SINE B2 -2 193 2 6 611 261 229 14 14 chr5 3493796 3493867 -149043392 + ORR1E LTR MaLR 23 93 -266 6 611 245 310 0 0 chr5 3495228 3495286 -149041973 + B4A SINE B4 85 142 -150 6 611 338 247 205 13 chr5 3495431 3495587 -149041672 - B3A SINE B2 -10 188 3 6 611 290 273 160 46 chr5 3495661 3495880 -149041379 + L1MC4 LINE L1 6859 7102 -940 6 611 593 305 5 20 chr5 3496371 3496575 -149040684 - B4A SINE B4 -77 215 15 6 611 514 229 44 30 chr5 3499408 3499543 -149037716 + ID_B1 SINE B4 86 222 -2 6 611 193 246 61 15 chr5 3499694 3499760 -149037499 + MIRb SINE MIR 143 211 -57 6 611 259 229 29 0 chr5 3499928 3499998 -149037261 + (TA)n Simple_repeat Simple_repeat 1 72 0 6 611 291 28 0 0 chr5 3500013 3500049 -149037210 + (TGG)n Simple_repeat Simple_repeat 2 37 0 1 611 1297 302 84 18 chr5 3500058 3500607 -149036652 - Lx9 LINE L1 -206 7438 6854 2 611 288 285 97 8 chr5 3500612 3500736 -149036523 - B4A SINE B4 -156 136 2 3 611 477 333 137 0 chr5 3502349 3502532 -149034727 + B4A SINE B4 34 241 -51 4 611 491 226 122 0 chr5 3503492 3503607 -149033652 + B3 SINE B2 2 130 -86 5 611 301 192 206 0 chr5 3504084 3504157 -149033102 - RSINE1 SINE B4 -70 95 8 6 611 22 0 0 0 chr5 3504174 3504196 -149033063 + AT_rich Low_complexity Low_complexity 1 22 0 7 611 574 281 65 0 chr5 3504490 3504643 -149032616 - RSINE1 SINE B4 0 165 3 8 611 375 304 7 13 chr5 3506226 3506376 -149030883 - L1MB7 LINE L1 -28 6150 6002 9 611 532 276 144 26 chr5 3506397 3506668 -149030591 - MLT1A0 LTR MaLR -50 315 13 1 611 541 270 144 29 chr5 3506681 3506994 -149030265 - L1MB7 LINE L1 -197 5987 5639 9 611 626 239 8 0 chr5 3507098 3507232 -149030027 + B3A SINE B2 3 137 -61 1 611 261 0 0 0 chr5 3507233 3507262 -149029997 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 611 696 260 46 11 chr5 3507726 3507901 -149029358 - B3A SINE B2 -16 182 2 1 611 550 71 40 0 chr5 3507992 3508091 -149029168 + (TTTTG)n Simple_repeat Simple_repeat 2 104 0 1 611 1249 41 0 0 chr5 3508093 3508239 -149029020 - B1_Mus2 SINE Alu 0 147 2 1 611 231 206 218 164 chr5 3509062 3509099 -149028160 - PB1D10 SINE Alu 0 117 96 1 611 196 30 0 57 chr5 3509099 3509134 -149028125 + (GCCTG)n Simple_repeat Simple_repeat 5 37 0 1 611 254 194 375 0 chr5 3509134 3509206 -149028053 - B1F2 SINE Alu -49 100 2 1 611 399 21 0 0 chr5 3509316 3509364 -149027895 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 611 1080 73 0 0 chr5 3509364 3509528 -149027731 + (TG)n Simple_repeat Simple_repeat 2 165 0 2 611 333 273 22 2 chr5 3509590 3509698 -149027561 - MIRb SINE MIR -92 176 60 2 611 279 303 0 0 chr5 3509760 3509826 -149027433 + ID4_ SINE ID 5 70 -13 2 611 273 57 0 0 chr5 3509831 3509866 -149027393 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 611 591 322 0 0 chr5 3510110 3510256 -149027003 + RSINE1 SINE B4 12 157 -8 2 611 815 78 9 0 chr5 3511838 3511954 -149025305 + (GA)n Simple_repeat Simple_repeat 1 117 0 2 611 25 31 0 0 chr5 3512347 3512379 -149024880 + AT_rich Low_complexity Low_complexity 1 32 0 2 611 210 288 42 67 chr5 3514550 3514669 -149022590 + B1F1 SINE Alu 34 149 0 2 611 21 0 0 0 chr5 3514749 3514770 -149022489 + AT_rich Low_complexity Low_complexity 1 21 0 2 611 241 230 27 13 chr5 3517500 3517575 -149019684 + (TATG)n Simple_repeat Simple_repeat 2 77 0 2 611 404 200 62 10 chr5 3517655 3517751 -149019508 + PB1D10 SINE Alu 15 115 -5 3 611 233 337 50 0 chr5 3518617 3518718 -149018541 - MIRb SINE MIR -129 139 34 3 611 573 292 65 0 chr5 3519878 3520046 -149017213 + B3A SINE B2 2 180 -18 3 611 252 59 0 0 chr5 3522227 3522261 -149014998 + (T)n Simple_repeat Simple_repeat 1 34 0 3 611 1117 29 58 0 chr5 3522631 3522769 -149014490 - B1_Mus2 SINE Alu -1 146 1 3 611 306 164 0 0 chr5 3523219 3523274 -149013985 + A-rich Low_complexity Low_complexity 1 55 0 3 611 246 81 0 0 chr5 3523474 3523511 -149013748 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 611 798 193 0 0 chr5 3523567 3523712 -149013547 - B1_Mus2 SINE Alu -1 146 2 3 611 628 163 137 8 chr5 3524859 3524983 -149012276 - B1_Mur4 SINE Alu 0 150 11 3 611 725 0 0 12 chr5 3525975 3526061 -149011198 + (TTC)n Simple_repeat Simple_repeat 1 85 0 3 611 249 33 0 0 chr5 3526297 3526327 -149010932 + (GGTTG)n Simple_repeat Simple_repeat 5 34 0 4 611 189 0 0 0 chr5 3527217 3527238 -149010021 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 611 375 350 12 83 chr5 3531359 3531599 -149005660 + B4 SINE B4 3 225 -67 4 611 415 326 22 34 chr5 3531737 3531915 -149005344 + B4A SINE B4 108 283 -9 4 611 3869 68 92 7 chr5 3531939 3532483 -149004776 + L1_Mus4 LINE L1 6040 6629 -7 4 611 366 23 0 0 chr5 3533100 3533143 -149004116 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 4 611 1134 91 6 0 chr5 3533143 3533300 -149003959 - B2_Mm1a SINE B2 -34 159 2 4 611 1475 70 0 11 chr5 3533340 3533528 -149003731 + B2_Mm1t SINE B2 2 187 -6 4 611 1153 95 0 0 chr5 3533913 3534060 -149003199 + B1_Mus1 SINE Alu 2 148 0 4 611 1589 154 83 18 chr5 3534061 3534364 -149002895 + L1_Mur2 LINE L1 5475 5800 -380 4 611 2900 164 63 29 chr5 3534369 3534959 -149002300 + Lx4B LINE L1 6426 7035 -23 5 611 327 348 12 0 chr5 3534959 3535123 -149002136 + GA-rich Low_complexity Low_complexity 1 166 0 5 611 927 149 0 0 chr5 3535203 3535344 -149001915 + B1_Mur1 SINE Alu 3 143 -6 5 611 455 246 81 47 chr5 3535365 3535514 -149001745 + B3A SINE B2 29 182 -16 5 611 440 242 211 11 chr5 3535549 3535729 -149001530 + B3 SINE B2 1 216 0 5 611 4060 189 51 33 chr5 3536392 3537567 -148999692 - RMER1B Other Other 0 1066 1 5 611 355 276 194 6 chr5 3537613 3537905 -148999354 + L1ME1 LINE L1 5320 5667 -777 5 611 207 0 0 0 chr5 3537983 3538006 -148999253 + (T)n Simple_repeat Simple_repeat 1 23 0 5 611 1145 75 0 20 chr5 3538006 3538156 -148999103 - B1_Mus2 SINE Alu 0 147 1 5 611 279 0 0 0 chr5 3538199 3538230 -148999029 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 5 611 644 323 67 9 chr5 3538230 3538455 -148998804 + B4A SINE B4 9 246 -46 6 611 400 34 0 33 chr5 3538463 3538523 -148998736 + (GGAGA)n Simple_repeat Simple_repeat 4 61 0 6 611 323 254 0 0 chr5 3538523 3538594 -148998665 + B4A SINE B4 217 287 -5 6 611 612 281 58 2 chr5 3538610 3538817 -148998442 + L1ME1 LINE L1 5892 6106 -73 5 612 285 29 0 0 chr5 3539448 3539482 -148997777 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 612 1955 153 89 13 chr5 3539543 3539926 -148997333 - MTC LTR MaLR 0 421 10 6 612 288 0 0 0 chr5 3539962 3539994 -148997265 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 612 616 256 73 25 chr5 3540061 3540265 -148996994 - B4A SINE B4 -76 216 3 6 612 183 321 38 13 chr5 3541085 3541164 -148996095 + MIRm SINE MIR 69 149 -127 6 612 1769 175 89 3 chr5 3541838 3542176 -148995083 - ORR1B2 LTR MaLR 0 367 1 6 612 290 222 32 0 chr5 3542268 3542331 -148994928 - ID4 SINE ID 0 83 19 6 612 3543 126 101 20 chr5 3542349 3543040 -148994219 - RMER6A LTR ERVK -9 747 1 6 612 382 185 94 4 chr5 3543561 3543658 -148993601 - B3 SINE B2 -7 191 95 7 612 276 0 68 0 chr5 3544423 3544467 -148992792 + (CAA)n Simple_repeat Simple_repeat 2 48 0 7 612 289 215 15 0 chr5 3545191 3545256 -148992003 - L1MC1 LINE L1 -76 6257 6192 7 612 183 129 0 0 chr5 3545676 3545707 -148991552 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 7 612 228 258 87 58 chr5 3545736 3545839 -148991420 - PB1D9 SINE Alu -2 118 13 7 612 462 241 123 7 chr5 3545852 3545998 -148991261 + B3A SINE B2 36 198 0 7 612 492 267 52 0 chr5 3546060 3546176 -148991083 - RSINE1 SINE B4 -2 163 42 7 612 306 167 91 0 chr5 3546295 3546361 -148990898 - B3A SINE B2 -125 73 2 7 612 270 230 69 131 chr5 3546361 3546506 -148990753 - L1MC1 LINE L1 -18 6315 6180 7 612 508 261 65 0 chr5 3546845 3546983 -148990276 - RSINE1 SINE B4 -8 157 11 7 612 594 226 35 15 chr5 3547017 3547169 -148990090 + B3 SINE B2 2 156 -60 7 612 414 240 115 39 chr5 3547169 3547299 -148989960 - B3 SINE B2 -74 142 3 8 612 561 273 25 79 chr5 3547361 3547564 -148989695 + B3A SINE B2 2 193 -5 8 612 186 71 0 0 chr5 3547639 3547667 -148989592 + (T)n Simple_repeat Simple_repeat 1 28 0 8 612 524 252 54 8 chr5 3547945 3548072 -148989187 + B3 SINE B2 21 145 -50 8 612 1081 219 74 19 chr5 3548228 3548498 -148988761 + B4A SINE B4 2 286 -6 8 612 14609 170 62 9 chr5 3548892 3550888 -148986371 - Lx5 LINE L1 -75 6975 4882 8 612 1673 27 0 0 chr5 3550888 3551075 -148986184 - B2_Mm1t SINE B2 -6 187 1 8 612 14609 149 60 10 chr5 3551075 3552811 -148984448 - Lx5 LINE L1 -996 4881 3027 8 612 418 351 30 0 chr5 3553217 3553351 -148983908 + ID_B1 SINE B4 9 146 -78 8 612 771 242 159 42 chr5 3553389 3553924 -148983335 - L1M4 LINE L1 -407 5776 5144 8 612 569 216 150 12 chr5 3553924 3554097 -148983162 + B3 SINE B2 5 201 -15 8 612 249 261 189 32 chr5 3554126 3554221 -148983038 - PB1D10 SINE Alu 0 117 8 9 612 272 292 0 65 chr5 3554161 3554238 -148983021 - ID_B1 SINE B4 -76 148 77 9 612 778 287 114 42 chr5 3554824 3555311 -148981948 - Lx9 LINE L1 -5 7468 6954 9 612 1130 273 95 5 chr5 3555307 3555686 -148981573 - Lx9 LINE L1 -658 6986 6574 9 612 601 263 149 0 chr5 3555679 3555854 -148981405 - Lx8 LINE L1 -1082 6391 6191 9 612 1172 62 0 7 chr5 3555858 3556004 -148981255 - B1_Mm SINE Alu -1 146 2 9 612 743 255 103 31 chr5 3556029 3556349 -148980910 - L1_Rod LINE L1 -598 5249 4907 9 612 588 295 121 36 chr5 3557025 3557331 -148979928 - MER68 LTR ERVL -157 406 75 9 612 25 0 0 0 chr5 3557665 3557690 -148979569 + AT_rich Low_complexity Low_complexity 1 25 0 9 612 538 210 143 0 chr5 3558221 3558340 -148978919 + B1_Mur3 SINE Alu 3 138 -11 9 612 538 180 153 23 chr5 3559799 3559930 -148977329 - B1_Mur3 SINE Alu 0 149 2 9 612 180 0 0 0 chr5 3560091 3560111 -148977148 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 612 839 116 0 8 chr5 3561153 3561275 -148975984 + 5S rRNA rRNA 1 121 0 1 612 1017 60 8 8 chr5 3561276 3561410 -148975849 + B1_Mus1 SINE Alu 2 135 -13 1 612 236 276 0 17 chr5 3561523 3561582 -148975677 - PB1 SINE Alu -3 124 67 1 612 1172 55 0 20 chr5 3561654 3561802 -148975457 - B1_Mus1 SINE Alu -2 146 2 1 612 1002 88 20 7 chr5 3562227 3562375 -148974884 - B1_Mur4 SINE Alu 0 150 1 1 612 460 195 201 32 chr5 3562422 3562576 -148974683 - B3A SINE B2 -16 182 3 1 612 715 299 15 5 chr5 3562643 3562848 -148974411 - B3 SINE B2 -1 215 9 1 612 735 230 79 0 chr5 3563263 3563441 -148973818 + B3A SINE B2 1 192 -6 1 612 1115 135 155 5 chr5 3563655 3563848 -148973411 - URR1B DNA MER1_type -3 222 1 1 612 824 162 0 42 chr5 3565935 3566077 -148971182 + B1_Mur2 SINE Alu 1 136 -13 1 612 268 234 141 0 chr5 3566115 3566179 -148971080 + RSINE1 SINE B4 2 74 -91 1 612 22 0 0 0 chr5 3566218 3566240 -148971019 + AT_rich Low_complexity Low_complexity 1 22 0 1 612 325 146 0 0 chr5 3566877 3566932 -148970327 - B3A SINE B2 -143 55 1 1 612 342 0 0 0 chr5 3567522 3567560 -148969699 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 1 612 479 223 207 0 chr5 3568169 3568290 -148968969 + ID_B1 SINE B4 76 221 -3 1 612 1306 66 32 37 chr5 3568306 3568494 -148968765 + B2_Mm2 SINE B2 1 187 -8 1 612 217 229 0 0 chr5 3568995 3569043 -148968216 + GA-rich Low_complexity Low_complexity 2 49 0 1 612 944 161 0 0 chr5 3570609 3570758 -148966501 - B1_Mur4 SINE Alu -1 149 1 1 612 1436 69 32 5 chr5 3570892 3571081 -148966178 - B2_Mm2 SINE B2 -1 194 1 1 612 410 232 120 59 chr5 3571907 3571938 -148965321 + B4 SINE B4 66 171 -121 1 612 652 101 172 25 chr5 3571938 3572060 -148965199 + B1_Mus1 SINE Alu 9 148 0 1 612 410 232 120 59 chr5 3572060 3572080 -148965179 + B4 SINE B4 172 248 -44 1 612 843 143 21 0 chr5 3572085 3572225 -148965034 + B1_Mur2 SINE Alu 1 143 -6 1 612 509 265 108 22 chr5 3572246 3572431 -148964828 + ID_B1 SINE B4 3 203 -21 1 612 327 217 244 24 chr5 3572716 3572839 -148964420 - RMER21B LTR ERV1 -275 567 418 1 612 618 208 8 7 chr5 3573234 3573375 -148963884 - B1_Mur4 SINE Alu -1 149 2 1 612 394 258 21 0 chr5 3573442 3573565 -148963694 + PB1D10 SINE Alu 2 117 0 1 612 227 163 23 0 chr5 3573958 3574001 -148963258 - ID4 SINE ID -39 44 1 1 612 1339 155 191 7 chr5 3574501 3574800 -148962459 + ORR1B1 LTR MaLR 41 394 0 1 612 661 228 111 30 chr5 3574919 3575118 -148962141 + B3 SINE B2 2 216 0 1 612 1158 86 108 6 chr5 3575246 3575422 -148961837 - B2_Mm2 SINE B2 0 195 2 1 612 1432 89 16 0 chr5 3576019 3576210 -148961049 - B2_Mm2 SINE B2 0 195 2 1 612 288 120 0 0 chr5 3576670 3576720 -148960539 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 612 26 0 0 0 chr5 3576784 3576810 -148960449 + AT_rich Low_complexity Low_complexity 1 26 0 1 612 1069 58 66 0 chr5 3576870 3577007 -148960252 + B1_Mus2 SINE Alu 2 147 0 1 612 650 305 108 4 chr5 3577408 3577668 -148959591 - RMER5 LTR ERV1 -16 518 232 1 612 1149 65 36 3 chr5 3577767 3577953 -148959306 + B2_Mm2 SINE B2 1 193 0 1 612 282 148 0 0 chr5 3578167 3578221 -148959038 + (T)n Simple_repeat Simple_repeat 1 54 0 1 612 564 280 41 20 chr5 3578834 3578980 -148958279 + B3A SINE B2 28 176 -22 1 612 295 185 0 18 chr5 3579121 3579176 -148958083 - ID4_ SINE ID -5 78 25 1 612 459 0 0 0 chr5 3579699 3579750 -148957509 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 612 1666 87 114 14 chr5 3579949 3580239 -148957020 - ORR1A4 LTR MaLR -10 319 1 1 612 204 261 231 17 chr5 3580924 3581041 -148956218 - MIR SINE MIR -11 251 110 1 612 234 284 119 0 chr5 3581210 3581277 -148955982 + PB1D10 SINE Alu 1 75 -42 1 612 354 81 26 39 chr5 3582290 3582367 -148954892 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 612 1558 181 104 29 chr5 3582378 3582753 -148954506 + MTC LTR MaLR 1 403 -18 1 612 606 243 54 34 chr5 3582753 3582902 -148954357 - RSINE1 SINE B4 -11 154 3 1 612 695 270 27 11 chr5 3583285 3583472 -148953787 + B4A SINE B4 8 197 -95 1 612 485 184 296 9 chr5 3584574 3584689 -148952570 + B1_Mur2 SINE Alu 1 148 -1 1 612 234 284 78 0 chr5 3584814 3584955 -148952304 + L1MD LINE L1 3084 3235 -2911 1 612 1065 43 65 0 chr5 3585052 3585190 -148952069 + B1_Mm SINE Alu 1 147 0 1 612 322 216 13 13 chr5 3585306 3585381 -148951878 + RLTR24 LTR ERV1 1 75 -454 1 612 227 284 51 31 chr5 3585511 3585609 -148951650 + RLTR24 LTR ERV1 350 449 -80 1 612 718 273 191 28 chr5 3585640 3586433 -148950826 + L1_Mur3 LINE L1 3411 4404 -1739 1 612 912 260 4 62 chr5 3586436 3586694 -148950565 + B4A SINE B4 6 248 -44 1 612 257 296 113 0 chr5 3586745 3586860 -148950399 + L1_Mur3 LINE L1 4409 4536 -1607 1 612 319 247 13 0 chr5 3586939 3587016 -148950243 - RSINE1 SINE B4 -86 79 2 1 612 559 172 134 45 chr5 3587039 3587173 -148950086 - B1_Mur3 SINE Alu -2 147 2 1 612 354 253 158 0 chr5 3587260 3587355 -148949904 - RSINE1 SINE B4 -53 112 3 1 612 471 335 5 10 chr5 3587359 3587564 -148949695 + L1_Mur3 LINE L1 4531 4734 -1409 1 612 1597 131 123 7 chr5 3587576 3587861 -148949398 + MTC LTR MaLR 104 421 0 1 612 302 223 40 139 chr5 3587863 3587925 -148949334 + L1_Mur3 LINE L1 4759 4815 -1328 1 612 1155 74 0 13 chr5 3587925 3588075 -148949184 + B1_Mus1 SINE Alu 1 148 0 1 612 302 223 40 139 chr5 3588075 3588163 -148949096 + L1_Mur3 LINE L1 4816 4894 -1249 1 612 466 277 106 21 chr5 3588181 3588612 -148948647 + L1_Mur3 LINE L1 4987 5459 -838 1 612 240 239 45 0 chr5 3588610 3588677 -148948582 + L1_Mur3 LINE L1 5410 5479 -821 1 612 201 74 0 0 chr5 3589155 3589182 -148948077 + (A)n Simple_repeat Simple_repeat 1 27 0 1 612 225 246 92 0 chr5 3589491 3589556 -148947703 + ID4 SINE ID 2 72 -11 1 612 1466 63 5 16 chr5 3589853 3590045 -148947214 + B2_Mm2 SINE B2 1 190 -5 1 612 213 39 0 0 chr5 3590188 3590214 -148947045 + (A)n Simple_repeat Simple_repeat 1 26 0 1 612 752 211 29 73 chr5 3591898 3592103 -148945156 - B3A SINE B2 -2 196 1 1 612 704 215 31 0 chr5 3592135 3592265 -148944994 - B1_Mus2 SINE Alu -11 136 3 1 612 28 0 0 0 chr5 3592265 3592293 -148944966 + AT_rich Low_complexity Low_complexity 1 28 0 1 612 301 214 174 0 chr5 3592323 3592421 -148944838 - B3A SINE B2 -81 117 3 1 612 712 238 37 26 chr5 3592601 3592791 -148944468 - B3A SINE B2 -6 192 1 1 612 353 250 42 0 chr5 3592944 3593016 -148944243 + RSINE1 SINE B4 34 108 -57 1 612 627 223 95 15 chr5 3593118 3593318 -148943941 + B3 SINE B2 1 216 0 1 612 594 246 7 22 chr5 3593720 3593857 -148943402 + B3A SINE B2 1 135 -63 1 612 496 312 106 0 chr5 3593954 3594162 -148943097 + B4A SINE B4 2 231 -61 1 612 292 242 19 39 chr5 3594168 3594271 -148942988 + B1_Mur1 SINE Alu 9 109 -40 1 612 231 88 0 0 chr5 3594275 3594309 -148942950 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 612 904 116 14 7 chr5 3594458 3594605 -148942654 - B1_Mur4 SINE Alu -2 148 1 1 612 361 314 47 52 chr5 3594903 3594975 -148942284 + ID_B1 SINE B4 2 212 -12 1 612 669 201 0 43 chr5 3594975 3595115 -148942144 + B1_Mus2 SINE Alu 2 135 -12 1 612 25 0 0 0 chr5 3597668 3597693 -148939566 + AT_rich Low_complexity Low_complexity 1 25 0 1 612 257 0 30 0 chr5 3597809 3597842 -148939417 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 612 1206 29 0 0 chr5 3597842 3597981 -148939278 - B1_Mus2 SINE Alu -8 139 1 1 612 2151 184 20 2 chr5 3598216 3598624 -148938635 - MTC LTR MaLR 0 421 7 1 612 971 60 15 0 chr5 3598625 3598759 -148938500 + B1_Mus1 SINE Alu 3 138 -10 1 612 195 42 0 0 chr5 3598759 3598783 -148938476 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 612 772 212 0 0 chr5 3599513 3599645 -148937614 - B1_Mur1 SINE Alu -17 132 1 1 612 588 91 146 0 chr5 3600604 3600714 -148936545 - B1_Mus2 SINE Alu 0 147 22 1 612 256 173 16 0 chr5 3601159 3601222 -148936037 - PB1D10 SINE Alu -43 74 11 1 612 903 166 7 0 chr5 3601481 3601620 -148935639 - B1_Mur1 SINE Alu -8 141 2 1 612 36 23 0 0 chr5 3601838 3601881 -148935378 + AT_rich Low_complexity Low_complexity 1 43 0 1 612 4685 49 30 2 chr5 3601992 3602563 -148934696 + LTRIS_Mus LTR ERV1 1 587 0 1 612 1229 75 30 56 chr5 3602658 3602818 -148934441 + B2_Mm1a SINE B2 2 160 -33 1 612 198 0 0 0 chr5 3602818 3602840 -148934419 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1 612 1229 75 30 56 chr5 3602840 3602854 -148934405 + B2_Mm1a SINE B2 161 168 -25 1 612 1141 61 0 39 chr5 3602854 3603007 -148934252 + B1_Mm SINE Alu 1 147 0 1 612 1229 75 30 56 chr5 3603007 3603028 -148934231 + B2_Mm1a SINE B2 169 193 0 1 612 216 158 0 0 chr5 3603030 3603068 -148934191 + A-rich Low_complexity Low_complexity 1 38 0 1 612 402 21 0 0 chr5 3603638 3603685 -148933574 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 612 665 278 110 19 chr5 3603804 3604013 -148933246 - B4A SINE B4 -63 229 2 1 612 366 252 40 10 chr5 3604365 3604465 -148932794 + PB1D10 SINE Alu 9 111 -6 1 612 572 222 16 1 chr5 3604472 3604599 -148932660 + B3 SINE B2 1 133 -60 1 612 195 42 0 0 chr5 3605055 3605079 -148932180 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 612 849 71 0 16 chr5 3605082 3605210 -148932049 - B1_Mus1 SINE Alu -6 142 17 1 612 823 204 12 18 chr5 3606619 3606784 -148930475 + B3 SINE B2 25 188 -28 1 612 704 97 32 0 chr5 3606784 3606908 -148930351 + (CAGA)n Simple_repeat Simple_repeat 1 128 0 2 612 559 317 102 52 chr5 3607187 3607530 -148929729 + MLT1A0 LTR MaLR 6 365 0 2 612 869 255 147 35 chr5 3607998 3608393 -148928866 - L1MB4 LINE L1 -147 6033 5595 2 612 706 238 51 15 chr5 3608476 3608672 -148928587 + ID_B1 SINE B4 1 203 -21 2 612 524 248 105 0 chr5 3608894 3609047 -148928212 - B4 SINE B4 -15 277 109 2 612 23 0 0 0 chr5 3611773 3611796 -148925463 + AT_rich Low_complexity Low_complexity 1 23 0 2 612 1259 61 48 32 chr5 3611945 3612132 -148925127 - B2_Mm2 SINE B2 -4 191 2 2 612 431 274 0 123 chr5 3612156 3612335 -148924924 + RSINE1 SINE B4 2 158 -7 2 612 336 24 0 0 chr5 3612473 3612514 -148924745 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 612 566 199 0 59 chr5 3613379 3613754 -148923505 + (TTGTG)n Simple_repeat Simple_repeat 1 352 0 2 612 377 260 0 60 chr5 3613795 3613979 -148923280 + (TTGTG)n Simple_repeat Simple_repeat 5 177 0 2 612 264 328 0 58 chr5 3614012 3614392 -148922867 + (CGCTG)n Simple_repeat Simple_repeat 1 357 0 2 612 373 257 0 60 chr5 3614325 3614507 -148922752 + (TTGTG)n Simple_repeat Simple_repeat 5 175 0 2 612 1757 152 132 3 chr5 3615366 3615715 -148921544 - ORR1B1 LTR MaLR 0 394 1 2 612 1798 96 85 0 chr5 3615928 3616221 -148921038 + ORR1A3 LTR MaLR 1 318 -8 2 612 750 303 72 21 chr5 3616233 3616621 -148920638 - L1MD LINE L1 -2497 3649 3242 2 612 664 279 22 0 chr5 3616713 3616896 -148920363 + B3A SINE B2 6 192 -6 2 612 210 37 0 0 chr5 3618119 3618146 -148919113 + (A)n Simple_repeat Simple_repeat 1 27 0 2 612 377 237 41 10 chr5 3618215 3618313 -148918946 + PB1D10 SINE Alu 4 104 -13 2 612 281 250 83 74 chr5 3618313 3618334 -148918925 + MT2B2 LTR ERVL 168 287 -297 2 612 26 88 0 0 chr5 3618462 3618530 -148918729 + AT_rich Low_complexity Low_complexity 1 68 0 2 612 474 203 8 92 chr5 3619046 3619176 -148918083 + PB1D9 SINE Alu 1 119 -1 2 612 1222 48 0 0 chr5 3619182 3619329 -148917930 + B1_Mm SINE Alu 1 147 0 2 612 200 31 62 0 chr5 3619330 3619362 -148917897 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 612 900 135 28 14 chr5 3619650 3619793 -148917466 - B1_Mus1 SINE Alu -2 146 2 2 612 236 75 0 24 chr5 3619965 3620006 -148917253 + Lx8 LINE L1 7432 7471 -2 2 612 617 254 0 0 chr5 3620891 3621025 -148916234 - RSINE1 SINE B4 -29 136 3 2 612 291 220 0 17 chr5 3622873 3622933 -148914326 + ID4 SINE ID 16 74 -9 2 612 1855 154 39 39 chr5 3622937 3623348 -148913911 - MTC LTR MaLR 0 421 11 2 612 562 200 9 0 chr5 3624268 3624378 -148912881 + PB1D9 SINE Alu 1 111 -9 2 612 198 0 0 0 chr5 3625936 3625958 -148911301 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 612 564 287 129 8 chr5 3626281 3626544 -148910715 - L1MB5 LINE L1 -169 6005 5711 2 612 520 234 62 0 chr5 3626654 3626782 -148910477 - L1MB5 LINE L1 -469 5715 5580 2 612 181 326 141 7 chr5 3627199 3627341 -148909918 - L2a LINE L2 -212 3214 3054 2 612 1221 62 0 0 chr5 3627680 3627826 -148909433 + B1_Mus2 SINE Alu 2 147 0 2 612 353 300 18 18 chr5 3628027 3628139 -148909120 - PB1D10 SINE Alu -5 112 1 2 612 948 86 130 41 chr5 3628445 3628614 -148908645 + B2_Mm1t SINE B2 2 185 -8 2 612 1183 61 0 13 chr5 3628691 3628841 -148908418 + B1_Mus1 SINE Alu 1 148 0 2 612 258 206 0 0 chr5 3628854 3628922 -148908337 + GA-rich Low_complexity Low_complexity 2 69 0 2 612 747 245 26 15 chr5 3629203 3629398 -148907861 + B3A SINE B2 2 198 0 2 612 1247 41 0 0 chr5 3629500 3629647 -148907612 - B1_Mus2 SINE Alu 0 147 1 2 612 216 162 0 0 chr5 3629878 3629915 -148907344 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 612 180 0 0 0 chr5 3630393 3630413 -148906846 + (TGG)n Simple_repeat Simple_repeat 1 20 0 2 612 715 140 0 0 chr5 3630414 3630528 -148906731 + B1_Mur4 SINE Alu 20 133 -17 2 612 1999 126 278 0 chr5 3630974 3631417 -148905842 + RMER4B LTR ERVK 10 575 -10 2 612 259 231 77 0 chr5 3632110 3632188 -148905071 - L1MC3 LINE L1 -939 6846 6763 2 612 438 241 136 0 chr5 3632400 3632591 -148904668 - B4 SINE B4 -41 251 35 2 612 277 297 14 0 chr5 3632660 3632734 -148904525 - ID4 SINE ID -1 82 8 2 612 733 47 0 61 chr5 3632731 3632845 -148904414 - B1_Mm SINE Alu -24 123 17 2 612 479 267 159 11 chr5 3633379 3633568 -148903691 + ID_B1 SINE B4 3 219 -5 2 612 27 49 0 0 chr5 3634558 3634599 -148902660 + AT_rich Low_complexity Low_complexity 1 41 0 2 612 26 0 0 0 chr5 3636926 3636952 -148900307 + AT_rich Low_complexity Low_complexity 1 26 0 2 612 23 0 0 0 chr5 3637539 3637562 -148899697 + AT_rich Low_complexity Low_complexity 1 23 0 2 612 7802 72 6 4 chr5 3637574 3638894 -148898365 - L1_Mus1 LINE L1 0 6567 5246 2 612 5666 92 5 5 chr5 3638894 3639679 -148897580 + L1_Mus1 LINE L1 4450 5234 -649 2 612 799 186 28 0 chr5 3640614 3640759 -148896500 + B1_Mur2 SINE Alu 1 149 0 2 612 246 271 14 14 chr5 3640759 3640830 -148896429 + GA-rich Low_complexity Low_complexity 2 72 0 2 612 266 325 73 5 chr5 3641825 3642029 -148895230 - MIR SINE MIR -23 239 22 2 612 275 191 0 0 chr5 3642907 3642954 -148894305 + Lx9 LINE L1 7301 7347 -297 2 612 245 186 0 0 chr5 3642958 3643001 -148894258 + ORR1C2 LTR MaLR 340 382 -2 2 612 567 249 111 21 chr5 3643019 3643253 -148894006 + Lx9 LINE L1 7386 7640 -4 2 612 438 274 99 60 chr5 3643272 3643505 -148893754 + MLT1B LTR MaLR 149 390 0 2 612 631 320 46 13 chr5 3643958 3644262 -148892997 - L1MC1 LINE L1 -6 6327 6014 2 612 224 67 0 0 chr5 3644798 3644828 -148892431 + B1_Mus1 SINE Alu 6 35 -113 2 612 737 209 126 0 chr5 3645657 3645848 -148891411 + B3 SINE B2 2 216 0 2 612 186 43 0 0 chr5 3646023 3646046 -148891213 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 612 203 194 0 0 chr5 3646223 3646259 -148891000 + T-rich Low_complexity Low_complexity 1 36 0 2 612 848 197 7 0 chr5 3646260 3646402 -148890857 - B1_Mur4 SINE Alu -6 144 2 2 612 214 152 17 17 chr5 3647451 3647511 -148889748 + (CCG)n Simple_repeat Simple_repeat 2 61 0 2 612 21 36 0 0 chr5 3647622 3647650 -148889609 + GC_rich Low_complexity Low_complexity 1 28 0 2 612 27 0 0 0 chr5 3647904 3647931 -148889328 + GC_rich Low_complexity Low_complexity 1 27 0 2 612 189 0 0 0 chr5 3647993 3648014 -148889245 + (CGGGG)n Simple_repeat Simple_repeat 5 25 0 2 612 395 237 32 0 chr5 3648324 3648417 -148888842 + B4A SINE B4 1 96 -196 2 612 711 239 138 63 chr5 3649353 3649621 -148887638 - B4A SINE B4 -2 290 3 2 612 413 314 57 0 chr5 3649625 3649765 -148887494 - B1F SINE Alu 0 149 2 2 612 756 84 0 0 chr5 3649902 3650009 -148887250 + B2_Mm2 SINE B2 1 107 -88 2 612 202 182 0 0 chr5 3650067 3650100 -148887159 + G-rich Low_complexity Low_complexity 5 37 0 2 612 190 136 45 0 chr5 3650121 3650165 -148887094 + GA-rich Low_complexity Low_complexity 2 47 0 2 612 3504 30 2 0 chr5 3650171 3650566 -148886693 - MTA_Mm LTR MaLR 0 396 1 2 612 1172 69 0 0 chr5 3650623 3650768 -148886491 + B1_Mus1 SINE Alu 3 147 -1 2 612 654 233 71 24 chr5 3650934 3651145 -148886114 - Lx6 LINE L1 0 7460 7240 2 612 557 293 44 25 chr5 3651266 3651469 -148885790 + B4 SINE B4 66 272 -20 2 612 1494 147 0 0 chr5 3651876 3652101 -148885158 + URR1B DNA MER1_type 1 225 0 2 612 381 153 82 0 chr5 3652322 3652407 -148884852 - MLT1A1 LTR MaLR 0 408 317 2 612 2553 237 101 74 chr5 3652463 3653124 -148884135 - Lx9 LINE L1 -4 7640 6992 2 612 3019 21 0 0 chr5 3653124 3653461 -148883798 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 612 2553 237 101 74 chr5 3653461 3653785 -148883474 - Lx9 LINE L1 -653 6991 6628 2 612 8087 66 6 6 chr5 3655596 3657055 -148880204 + L1_Mus2 LINE L1 5102 6565 -1 2 612 211 89 0 82 chr5 3657059 3657108 -148880151 + A-rich Low_complexity Low_complexity 4 48 0 2 612 22 35 0 0 chr5 3657527 3657556 -148879703 + AT_rich Low_complexity Low_complexity 1 29 0 2 612 185 65 32 0 chr5 3657876 3657907 -148879352 + (TTATA)n Simple_repeat Simple_repeat 3 34 0 2 612 45 0 0 0 chr5 3658260 3658305 -148878954 + AT_rich Low_complexity Low_complexity 1 45 0 2 612 1401 170 113 32 chr5 3658809 3659155 -148878104 - ORR1D1 LTR MaLR 0 374 1 2 612 316 38 18 36 chr5 3659550 3659605 -148877654 + (TTTTTG)n Simple_repeat Simple_repeat 2 55 0 2 612 746 193 0 48 chr5 3659738 3659885 -148877374 + B1_Mus2 SINE Alu 2 141 -6 2 612 198 167 0 0 chr5 3659885 3659921 -148877338 + (CAG)n Simple_repeat Simple_repeat 1 36 0 2 612 585 0 0 0 chr5 3659919 3659984 -148877275 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 612 920 126 0 7 chr5 3659984 3660136 -148877123 + (GGAA)n Simple_repeat Simple_repeat 2 152 0 2 612 529 312 124 51 chr5 3660378 3660847 -148876412 - MLT1D LTR MaLR 0 505 3 2 612 478 231 81 70 chr5 3661371 3661557 -148875702 - URR1B DNA MER1_type -1 224 37 2 612 2176 204 156 22 chr5 3662484 3663063 -148874196 - Lx7 LINE L1 -493 6980 6277 2 612 1547 98 19 27 chr5 3663062 3663325 -148873934 + L1_Mur3 LINE L1 792 1052 -6660 2 612 4515 142 29 23 chr5 3663314 3664064 -148873195 - Lx4A LINE L1 -51 7007 6253 2 612 554 221 45 91 chr5 3664828 3664982 -148872277 - B1_Mur2 SINE Alu 0 149 3 2 612 428 286 27 0 chr5 3665412 3665524 -148871735 + PB1D10 SINE Alu 3 117 0 2 612 1370 68 10 40 chr5 3665528 3665726 -148871533 + B2_Mm1t SINE B2 1 192 -1 2 612 378 297 263 6 chr5 3665817 3665973 -148871286 - B3 SINE B2 -5 211 16 3 612 676 294 27 32 chr5 3666012 3666198 -148871061 - B3 SINE B2 -29 187 3 3 612 267 309 101 62 chr5 3666205 3666384 -148870875 + L1MD2 LINE L1 5927 6112 -247 3 612 667 151 16 16 chr5 3668387 3668515 -148868744 - B1_Mur1 SINE Alu -21 128 1 3 612 414 0 0 0 chr5 3668527 3668573 -148868686 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 612 246 72 52 35 chr5 3668715 3668773 -148868486 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 3 613 537 248 262 13 chr5 3670926 3671155 -148866104 + B4 SINE B4 1 286 -6 3 613 555 16 0 0 chr5 3672409 3672473 -148864786 + (TCCC)n Simple_repeat Simple_repeat 2 65 0 3 613 492 308 0 15 chr5 3672482 3672614 -148864645 - ID_B1 SINE B4 -16 208 79 3 613 1124 73 0 0 chr5 3672732 3672868 -148864391 - B1_Mus2 SINE Alu -11 136 1 3 613 2984 78 26 5 chr5 3673213 3673640 -148863619 - RLTR1B LTR ERV1 -76 436 1 3 613 6009 31 16 0 chr5 3673640 3674653 -148862606 - RLTR1B-int LTR ERV1 0 3299 2154 3 613 307 208 27 27 chr5 3674786 3674860 -148862399 - ID4_ SINE ID -6 77 4 3 613 192 326 86 36 chr5 3675006 3675146 -148862113 - MIRb SINE MIR -104 164 18 3 613 318 50 0 0 chr5 3675181 3675221 -148862038 + (CATA)n Simple_repeat Simple_repeat 2 41 0 3 613 642 185 85 0 chr5 3675534 3675664 -148861595 - B1F2 SINE Alu -7 142 2 3 613 235 189 203 0 chr5 3676749 3676823 -148860436 - B4A SINE B4 -75 217 129 3 613 189 0 0 0 chr5 3676865 3676886 -148860373 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 3 613 523 244 63 0 chr5 3677008 3677135 -148860124 - B1_Mur1 SINE Alu -13 136 2 3 613 429 20 0 0 chr5 3677489 3677539 -148859720 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 613 379 286 156 0 chr5 3678832 3678986 -148858273 - ID_B1 SINE B4 -8 216 39 3 613 357 259 110 7 chr5 3679831 3679967 -148857292 - L1MB2 LINE L1 -1 6170 6021 3 613 884 257 105 25 chr5 3679968 3680011 -148857248 - MT2A LTR ERVL 0 601 545 3 613 261 0 0 0 chr5 3680011 3680040 -148857219 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 613 1302 188 191 99 chr5 3680040 3680453 -148856806 - MT2A LTR ERVL -82 451 1 3 613 26024 157 73 70 chr5 3680454 3680636 -148856623 - MERVL_2A-int LTR ERVL -1 5760 5571 3 613 886 153 204 28 chr5 3680636 3680817 -148856442 + B3 SINE B2 3 215 -1 3 613 26024 157 73 70 chr5 3680817 3680891 -148856368 - MERVL_2A-int LTR ERVL -191 5570 5557 3 613 1069 128 0 0 chr5 3680891 3681040 -148856219 - B1_Mur4 SINE Alu 0 150 2 3 613 26024 157 73 70 chr5 3681040 3684966 -148852293 - MERVL_2A-int LTR ERVL -205 5556 1642 3 613 517 219 161 63 chr5 3684966 3685171 -148852088 + URR1B DNA MER1_type 1 225 0 3 613 26024 157 73 70 chr5 3685171 3686269 -148850990 - MERVL_2A-int LTR ERVL -4120 1641 465 3 613 270 123 211 0 chr5 3686269 3686326 -148850933 - MERVL_2A-int LTR ERVL -5535 226 158 3 613 266 225 27 27 chr5 3686447 3686520 -148850739 + B3 SINE B2 131 203 -13 3 613 267 173 0 0 chr5 3686520 3686572 -148850687 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 613 1126 96 11 11 chr5 3686572 3686751 -148850508 + (CATA)n Simple_repeat Simple_repeat 1 179 0 3 613 570 250 35 6 chr5 3686817 3686986 -148850273 + Lx9 LINE L1 7266 7439 -205 3 613 333 304 131 21 chr5 3687683 3687965 -148849294 + LTR40c LTR ERVL 151 463 -2 3 613 442 181 0 67 chr5 3688155 3688244 -148849015 + URR1B DNA MER1_type 2 84 -141 3 613 201 213 0 0 chr5 3695857 3695904 -148841355 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 3 613 233 247 24 0 chr5 3695942 3696027 -148841232 + (CCCTAA)n Simple_repeat Simple_repeat 2 88 0 3 613 303 259 23 12 chr5 3696391 3696477 -148840782 + (TTAGGG)n Simple_repeat Simple_repeat 2 88 0 3 613 273 182 0 0 chr5 3696515 3696570 -148840689 + (TGGA)n Simple_repeat Simple_repeat 2 56 0 3 613 9165 91 34 6 chr5 3696932 3698698 -148838561 + Lx3C LINE L1 5166 6969 -7 3 613 1322 67 45 6 chr5 3698990 3699169 -148838090 + B2_Mm2 SINE B2 2 187 -8 3 613 31 68 0 0 chr5 3699179 3699238 -148838021 + AT_rich Low_complexity Low_complexity 1 59 0 3 613 683 151 63 0 chr5 3699697 3699823 -148837436 + B1_Mus2 SINE Alu 1 134 -13 3 613 236 86 0 0 chr5 3700546 3700581 -148836678 - Lx4A LINE L1 -3 7055 7021 3 613 2313 102 47 0 chr5 3700579 3700921 -148836338 + Lx4A LINE L1 5593 5950 -1108 3 613 1126 95 0 0 chr5 3701052 3701199 -148836060 - B1_Mus1 SINE Alu 0 148 2 3 613 181 333 0 0 chr5 3703639 3703690 -148833569 - MIR SINE MIR -3 259 209 3 613 414 0 0 0 chr5 3704467 3704513 -148832746 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 613 610 131 9 9 chr5 3704629 3704737 -148832522 - B1_Mur4 SINE Alu 0 150 43 3 613 354 298 56 40 chr5 3705113 3705389 -148831870 + MLT1A LTR MaLR 17 296 -69 3 613 764 244 88 0 chr5 3705390 3705583 -148831676 + B3 SINE B2 7 216 0 3 613 953 206 39 29 chr5 3705635 3705840 -148831419 + B3 SINE B2 1 207 -9 3 613 182 91 30 0 chr5 3706006 3706039 -148831220 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 3 613 225 0 0 0 chr5 3706057 3706082 -148831177 + (T)n Simple_repeat Simple_repeat 1 25 0 3 613 504 230 26 34 chr5 3707172 3707289 -148829970 - PB1D10 SINE Alu -1 116 1 3 613 366 165 0 254 chr5 3707540 3707624 -148829635 - B1_Mus1 SINE Alu -45 103 54 3 613 1170 75 0 0 chr5 3707624 3707770 -148829489 - B1_Mm SINE Alu -1 146 1 3 613 366 165 0 254 chr5 3707770 3707823 -148829436 - B1_Mus1 SINE Alu -95 53 1 3 613 233 200 0 67 chr5 3707871 3707946 -148829313 + Lx4B LINE L1 6985 7054 -4 3 613 32 0 0 0 chr5 3707974 3708006 -148829253 + AT_rich Low_complexity Low_complexity 1 32 0 3 613 27 62 0 0 chr5 3708813 3708861 -148828398 + AT_rich Low_complexity Low_complexity 1 48 0 3 613 21 71 0 0 chr5 3709258 3709300 -148827959 + AT_rich Low_complexity Low_complexity 1 42 0 3 613 22 0 0 0 chr5 3709344 3709366 -148827893 + AT_rich Low_complexity Low_complexity 1 22 0 3 613 3239 284 92 119 chr5 3709376 3709813 -148827446 + Lx6 LINE L1 5836 6564 -896 3 613 3151 63 29 7 chr5 3709813 3710229 -148827030 + L1_Mus2 LINE L1 6142 6566 0 3 613 3239 257 76 20 chr5 3710229 3711047 -148826212 + Lx6 LINE L1 6565 7430 -30 3 613 319 316 21 98 chr5 3711083 3711276 -148825983 - B3A SINE B2 -16 182 5 3 613 620 161 90 30 chr5 3711913 3712047 -148825212 - B1_Mur1 SINE Alu 0 149 8 3 613 1132 130 0 26 chr5 3713418 3713608 -148823651 + L1Md_F3 LINE L1 6400 6584 0 3 613 1478 28 62 0 chr5 3713704 3713880 -148823379 + B2_Mm1a SINE B2 1 187 -6 3 613 277 156 0 0 chr5 3713942 3713987 -148823272 + URR1B DNA MER1_type 33 77 -148 3 613 326 65 0 0 chr5 3714043 3714089 -148823170 + URR1B DNA MER1_type 180 225 0 3 613 860 204 134 0 chr5 3714120 3714306 -148822953 - B3 SINE B2 -5 211 1 3 613 256 283 58 39 chr5 3714388 3714491 -148822768 - PB1D10 SINE Alu -1 116 12 3 613 1097 50 42 21 chr5 3715101 3715245 -148822014 - B1_Mus2 SINE Alu 0 147 1 3 613 204 45 89 22 chr5 3716298 3716343 -148820916 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 3 613 271 295 42 0 chr5 3716889 3716984 -148820275 + PB1D10 SINE Alu 12 110 -7 3 613 493 247 142 93 chr5 3717783 3717989 -148819270 + RMER15 LTR ERVL 275 496 -79 3 613 4919 84 42 27 chr5 3717989 3718697 -148818562 - L1_Mus2 LINE L1 -11 6555 5837 3 613 493 247 142 93 chr5 3718697 3718736 -148818523 + RMER15 LTR ERVL 497 532 -43 3 613 2546 141 23 2 chr5 3718812 3719240 -148818019 + L1_Mur3 LINE L1 4444 4880 -1000 3 613 256 302 0 23 chr5 3719418 3719506 -148817753 - RMER15 LTR ERVL -154 421 336 3 613 1087 249 41 3 chr5 3719578 3719872 -148817387 + ORR1D2 LTR MaLR 66 370 0 3 613 335 212 0 66 chr5 3722045 3722136 -148815123 + Lx6 LINE L1 7368 7452 -8 3 613 252 320 48 16 chr5 3722805 3722929 -148814330 + L1M5 LINE L1 5517 5644 -535 3 613 250 253 12 118 chr5 3723086 3723171 -148814088 - ORR1D2 LTR MaLR -252 118 43 3 613 249 312 33 46 chr5 3723182 3723333 -148813926 + L1MB2 LINE L1 5865 6013 -158 3 613 704 163 33 60 chr5 3723395 3723545 -148813714 + B1_Mur3 SINE Alu 3 148 -1 3 613 180 0 0 0 chr5 3724117 3724137 -148813122 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 3 613 215 245 143 0 chr5 3724582 3724631 -148812628 - PB1D10 SINE Alu -56 61 6 3 613 706 141 7 0 chr5 3724978 3725113 -148812146 + Lx3A LINE L1 6843 6978 -3 3 613 460 339 16 71 chr5 3726108 3726292 -148810967 - MER58A DNA MER1_type -5 219 46 3 613 580 275 12 97 chr5 3726479 3726644 -148810615 + RSINE1 SINE B4 15 165 0 3 613 229 385 111 6 chr5 3727138 3727300 -148809959 + MIRb SINE MIR 26 204 -64 3 613 4093 146 55 9 chr5 3727931 3728701 -148808558 + RLTR22_Mur LTR ERVK 1 805 -1043 3 613 370 294 57 74 chr5 3728848 3729024 -148808235 + RMER12 LTR ERVK 1150 1322 0 3 613 25 0 0 0 chr5 3729135 3729160 -148808099 + AT_rich Low_complexity Low_complexity 1 25 0 3 613 572 254 78 60 chr5 3730042 3730260 -148806999 - ID_B1 SINE B4 -1 223 2 3 613 25 0 0 0 chr5 3730626 3730651 -148806608 + AT_rich Low_complexity Low_complexity 1 25 0 3 613 243 146 0 0 chr5 3731328 3731369 -148805890 + (CGTG)n Simple_repeat Simple_repeat 3 43 0 3 613 468 323 93 78 chr5 3731371 3731640 -148805619 - B4 SINE B4 0 292 20 3 613 257 331 50 14 chr5 3731653 3731794 -148805465 + L1MA10 LINE L1 6180 6325 -9 3 613 21 82 0 0 chr5 3732306 3732355 -148804904 + AT_rich Low_complexity Low_complexity 1 49 0 3 613 294 260 0 0 chr5 3732997 3733070 -148804189 + ID4_ SINE ID 2 74 -9 3 613 789 128 0 0 chr5 3733096 3733221 -148804038 + (CACG)n Simple_repeat Simple_repeat 1 125 0 3 613 303 140 0 0 chr5 3734781 3734831 -148802428 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 613 216 267 217 25 chr5 3734838 3734998 -148802261 - MIRm SINE MIR -59 209 8 3 613 324 272 43 0 chr5 3735099 3735191 -148802068 + L1M2 LINE L1 5681 5776 -524 4 613 279 0 0 0 chr5 3735194 3735225 -148802034 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 613 709 278 143 64 chr5 3736013 3736568 -148800691 + L1MB1 LINE L1 5261 5925 -264 4 613 1322 86 0 31 chr5 3736784 3736977 -148800282 + B2_Mm2 SINE B2 1 187 -8 4 613 267 256 11 103 chr5 3737188 3737275 -148799984 + ID4 SINE ID 5 83 0 4 613 239 309 180 60 chr5 3737299 3737399 -148799860 + B1F2 SINE Alu 1 112 -37 4 613 21 36 0 0 chr5 3737503 3737531 -148799728 + AT_rich Low_complexity Low_complexity 1 28 0 4 613 723 78 250 0 chr5 3737661 3737777 -148799482 + B1_Mus1 SINE Alu 2 146 -2 4 613 3218 111 12 8 chr5 3738375 3738857 -148798402 - Lx2 LINE L1 0 6997 6514 4 613 1123 57 7 0 chr5 3739061 3739202 -148798057 + B1_Mus1 SINE Alu 1 142 -6 4 613 716 149 59 15 chr5 3739869 3740005 -148797254 - B1_Mus1 SINE Alu 0 148 7 4 613 403 271 68 117 chr5 3739871 3740015 -148797244 - B4 SINE B4 -69 223 84 4 613 516 32 0 0 chr5 3740015 3740077 -148797182 + (TATG)n Simple_repeat Simple_repeat 3 64 0 4 613 403 271 68 117 chr5 3740077 3740095 -148797164 - B4 SINE B4 -209 83 69 4 613 461 228 0 0 chr5 3740114 3740193 -148797066 - B3 SINE B2 -86 130 52 4 613 372 410 77 26 chr5 3740333 3740751 -148796508 - L2b LINE L2 -6 3369 2931 4 613 333 0 0 0 chr5 3741215 3741252 -148796007 + (CATA)n Simple_repeat Simple_repeat 2 38 0 4 613 2706 167 22 51 chr5 3741449 3742128 -148795131 - BGLII_B LTR ERVK 0 553 1 4 613 1000 227 5 0 chr5 3742150 3742348 -148794911 + B3 SINE B2 18 216 0 4 613 245 262 152 19 chr5 3742785 3742890 -148794369 + PB1D9 SINE Alu 1 119 -1 4 613 346 330 121 70 chr5 3743022 3743221 -148794038 + MLT1J1 LTR MaLR 84 292 -119 4 613 437 282 28 71 chr5 3743649 3743790 -148793469 - Tigger7 DNA MER2_type -2347 144 10 4 613 1190 86 22 22 chr5 3743866 3744044 -148793215 - B2_Mm2 SINE B2 -17 178 1 4 613 26 50 0 0 chr5 3744047 3744087 -148793172 + AT_rich Low_complexity Low_complexity 1 40 0 4 613 588 318 17 52 chr5 3744384 3744616 -148792643 - ID_B1 SINE B4 0 224 1 4 613 369 0 0 0 chr5 3744827 3744868 -148792391 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 613 269 170 37 19 chr5 3744920 3744974 -148792285 + URR1B DNA MER1_type 39 93 -132 4 613 249 150 0 0 chr5 3745062 3745102 -148792157 + URR1B DNA MER1_type 180 219 -6 4 613 297 0 0 0 chr5 3745109 3745142 -148792117 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 613 1111 42 0 34 chr5 3746215 3746364 -148790895 + B1_Mus1 SINE Alu 3 146 -2 4 613 198 0 0 0 chr5 3746440 3746462 -148790797 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 4 613 784 119 0 53 chr5 3746462 3746595 -148790664 + B1_Mus2 SINE Alu 22 147 0 4 613 952 94 0 26 chr5 3747589 3747742 -148789517 - L1Md_F2 LINE L1 -14 6568 6420 4 613 673 101 0 10 chr5 3748902 3749002 -148788257 - MTA_Mm LTR MaLR 0 396 298 4 613 1233 60 6 6 chr5 3748990 3749157 -148788102 - MTA_Mm LTR MaLR -229 167 1 4 613 8380 51 12 30 chr5 3749157 3750275 -148786984 - MTA_Mm-int LTR MaLR 0 1098 1 4 613 3364 38 2 0 chr5 3750275 3750670 -148786589 - MTA_Mm LTR MaLR 0 396 1 4 613 210 71 0 0 chr5 3751030 3751058 -148786201 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 613 2910 59 3 0 chr5 3751078 3751453 -148785806 + L1Md_F2 LINE L1 6207 6582 0 4 613 689 217 7 21 chr5 3752402 3752543 -148784716 + B1_Mur2 SINE Alu 1 139 -10 4 613 29 60 0 0 chr5 3752649 3752699 -148784560 + AT_rich Low_complexity Low_complexity 1 50 0 4 613 2653 159 53 13 chr5 3752982 3753183 -148784076 + L1_Mur3 LINE L1 1452 1663 -4217 4 613 3255 48 5 0 chr5 3753183 3753577 -148783682 - MTA_Mm LTR MaLR 0 396 1 4 613 2653 159 53 13 chr5 3753577 3753923 -148783336 + L1_Mur3 LINE L1 1664 2021 -3859 4 613 225 0 0 0 chr5 3753930 3753955 -148783304 + (CCA)n Simple_repeat Simple_repeat 2 26 0 4 613 234 152 21 21 chr5 3753956 3754003 -148783256 + ORR1D1 LTR MaLR 6 52 -322 4 613 1251 265 143 15 chr5 3754005 3754543 -148782716 + Lx6 LINE L1 6455 7434 -26 4 613 245 185 0 0 chr5 3755907 3755961 -148781298 + A-rich Low_complexity Low_complexity 3 56 0 4 613 5221 47 0 0 chr5 3756120 3756754 -148780505 + L1Md_T LINE L1 5949 6582 0 4 613 226 352 33 0 chr5 3757250 3757341 -148779918 - MER5A1 DNA MER1_type -37 129 36 4 613 225 299 11 33 chr5 3758456 3758546 -148778713 + (TATG)n Simple_repeat Simple_repeat 1 88 0 4 613 400 300 105 41 chr5 3758631 3758888 -148778371 + Cheshire DNA MER1_type 26 256 -2164 4 613 926 238 47 0 chr5 3758983 3759176 -148778083 - B3 SINE B2 -8 208 7 4 613 601 272 13 20 chr5 3759206 3759356 -148777903 - RSINE1 SINE B4 -14 151 3 4 613 411 241 170 0 chr5 3759542 3759654 -148777605 + ID_B1 SINE B4 84 214 -10 4 613 475 184 56 37 chr5 3760155 3760262 -148776997 + PB1D9 SINE Alu 10 118 -2 4 613 189 0 0 0 chr5 3760270 3760291 -148776968 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 4 613 658 204 158 11 chr5 3760372 3760555 -148776704 - B3 SINE B2 -6 210 1 4 613 233 163 0 93 chr5 3760592 3760646 -148776613 + ORR1E LTR MaLR 1 49 -310 4 613 38673 49 7 9 chr5 3760654 3766939 -148770320 - L1Md_T LINE L1 0 6582 296 4 613 515 281 18 0 chr5 3766940 3767054 -148770205 + ORR1E LTR MaLR 40 155 -204 4 613 343 213 73 109 chr5 3767210 3767347 -148769912 + ORR1E LTR MaLR 248 379 0 4 613 180 0 0 0 chr5 3767411 3767431 -148769828 + (A)n Simple_repeat Simple_repeat 1 20 0 4 613 676 239 179 21 chr5 3768518 3768753 -148768506 + RMER21B LTR ERV1 296 567 -275 4 613 349 336 35 9 chr5 3769875 3769989 -148767270 + RSINE1 SINE B4 3 119 -46 4 613 1140 39 0 19 chr5 3769989 3770146 -148767113 + L1Md_F2 LINE L1 6428 6581 -1 4 613 24 0 0 0 chr5 3770368 3770392 -148766867 + AT_rich Low_complexity Low_complexity 1 24 0 4 613 971 189 28 6 chr5 3770427 3770608 -148766651 - Lx7 LINE L1 -389 7307 7123 4 613 332 267 208 46 chr5 3770608 3770781 -148766478 - Charlie1a DNA MER1_type -306 1149 949 4 613 1129 65 0 0 chr5 3770979 3771117 -148766142 - B1_Mus1 SINE Alu -10 138 1 4 613 726 274 93 4 chr5 3771143 3771400 -148765859 - Charlie1a DNA MER1_type -636 819 540 4 613 593 277 192 27 chr5 3771442 3771739 -148765520 + Lx8 LINE L1 6856 7201 -272 4 613 1177 55 0 7 chr5 3772929 3773077 -148764182 - B1_Mm SINE Alu 0 147 1 4 613 1972 227 75 20 chr5 3773248 3773700 -148763559 + MT2A LTR ERVL 3 458 -75 4 613 324 0 0 0 chr5 3773700 3773736 -148763523 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 613 372 22 0 0 chr5 3773736 3773780 -148763479 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 613 1972 227 75 20 chr5 3773780 3773829 -148763430 + MT2A LTR ERVL 459 532 -1 4 613 3862 90 18 21 chr5 3773940 3774505 -148762754 + L1_Mus4 LINE L1 6069 6631 -5 4 613 220 368 72 18 chr5 3774869 3775035 -148762224 + MIRb SINE MIR 75 249 -19 4 613 232 368 41 99 chr5 3775814 3775986 -148761273 + MER5B DNA MER1_type 1 162 -16 4 613 23 78 0 0 chr5 3776140 3776191 -148761068 + AT_rich Low_complexity Low_complexity 1 51 0 4 613 751 289 4 26 chr5 3776226 3776453 -148760806 + ID_B1 SINE B4 1 222 -2 4 613 271 284 82 31 chr5 3776790 3776888 -148760371 - PB1D10 SINE Alu -14 103 1 4 613 983 293 19 19 chr5 3777766 3778236 -148759023 - L1_Mur3 LINE L1 -1232 4648 4179 4 613 744 290 98 16 chr5 3778870 3779126 -148758133 + B4A SINE B4 2 278 -14 4 613 242 171 0 0 chr5 3779210 3779251 -148758008 - L1MD LINE L1 -1848 4298 4258 4 613 457 273 165 11 chr5 3779431 3779783 -148757476 + L1MC4a LINE L1 7303 7708 -174 4 613 391 249 241 6 chr5 3780373 3780547 -148756712 + B3 SINE B2 2 216 0 4 613 804 282 15 2 chr5 3780570 3780769 -148756490 + B3A SINE B2 8 215 -1 4 613 200 59 0 29 chr5 3780874 3780909 -148756350 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 613 820 171 28 14 chr5 3780913 3781055 -148756204 - B1_Mur4 SINE Alu -4 146 3 4 613 639 148 26 17 chr5 3781106 3781223 -148756036 + B1_Mus1 SINE Alu 31 148 0 4 613 183 80 0 0 chr5 3781226 3781251 -148756008 + (A)n Simple_repeat Simple_repeat 1 25 0 4 613 757 254 137 11 chr5 3781407 3781778 -148755481 + Lx9 LINE L1 7055 7472 -172 4 613 246 62 0 0 chr5 3781782 3781814 -148755445 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 4 613 497 252 0 0 chr5 3781983 3782090 -148755169 + B1_Mur1 SINE Alu 43 149 0 4 613 892 236 30 0 chr5 3782156 3782355 -148754904 + B3 SINE B2 1 205 -11 4 613 494 300 12 42 chr5 3782489 3782656 -148754603 + RSINE1 SINE B4 2 163 -2 4 613 626 238 133 6 chr5 3782812 3782977 -148754282 - B3 SINE B2 -17 199 14 4 613 226 314 20 0 chr5 3783510 3783561 -148753698 + B1F2 SINE Alu 1 52 -97 4 613 693 171 161 19 chr5 3783567 3783728 -148753531 + MTC LTR MaLR 23 206 -215 4 613 25 0 0 0 chr5 3783771 3783796 -148753463 + AT_rich Low_complexity Low_complexity 1 25 0 4 613 245 158 35 0 chr5 3783796 3783853 -148753406 + A-rich Low_complexity Low_complexity 3 61 0 4 613 743 176 34 34 chr5 3783858 3784005 -148753254 + MTC LTR MaLR 204 350 -71 4 613 611 263 29 7 chr5 3783997 3784135 -148753124 - B3A SINE B2 -57 141 1 4 613 898 184 60 50 chr5 3785312 3785512 -148751747 - B3 SINE B2 -11 205 4 4 613 243 330 75 9 chr5 3785785 3785892 -148751367 + MER68 LTR ERVL 62 175 -388 4 613 833 147 0 0 chr5 3785896 3786025 -148751234 + B3 SINE B2 2 130 -86 4 613 412 321 179 0 chr5 3786121 3786255 -148751004 + RSINE1 SINE B4 4 161 -4 4 613 846 259 68 0 chr5 3786327 3786547 -148750712 + MER68 LTR ERVL 253 487 -76 4 613 1744 288 110 75 chr5 3786784 3787306 -148749953 + MER68-int LTR ERVL 568 1115 -1875 4 613 517 322 55 0 chr5 3787306 3787452 -148749807 + RSINE1 SINE B4 4 157 -8 4 613 1744 288 110 75 chr5 3787452 3787825 -148749434 + MER68-int LTR ERVL 1116 1491 -1499 4 613 3218 48 8 2 chr5 3787825 3788219 -148749040 - MTA_Mm LTR MaLR 0 396 1 4 613 1744 288 110 75 chr5 3788219 3788348 -148748911 + MER68-int LTR ERVL 1492 1629 -1361 4 613 507 241 6 110 chr5 3788860 3789042 -148748217 + RSINE1 SINE B4 3 165 0 5 613 578 248 0 0 chr5 3789073 3789186 -148748073 - PB1D9 SINE Alu -7 113 1 5 613 332 333 15 10 chr5 3789308 3789422 -148747837 + B1F1 SINE Alu 1 118 -2 5 613 232 259 24 36 chr5 3789430 3789514 -148747745 + GA-rich Low_complexity Low_complexity 2 84 0 5 613 184 250 0 48 chr5 3789795 3789837 -148747422 + MIRc SINE MIR 44 83 -185 5 613 695 314 181 39 chr5 3791023 3791801 -148745458 - L2a LINE L2 -227 3199 2311 5 613 489 265 89 96 chr5 3792754 3792900 -148744359 + B3A SINE B2 51 195 0 5 613 831 202 36 21 chr5 3792901 3793093 -148744166 + B2_Mm2 SINE B2 1 195 0 5 613 227 175 76 45 chr5 3793101 3793167 -148744092 - MER105 DNA DNA -12 192 125 5 613 1054 88 0 0 chr5 3793178 3793314 -148743945 - B1_Mm SINE Alu -11 136 1 5 613 242 274 23 35 chr5 3793321 3793408 -148743851 - MER105 DNA DNA -64 140 55 5 613 582 254 30 0 chr5 3793426 3793560 -148743699 + MER5A DNA MER1_type 46 183 -6 5 613 444 37 0 0 chr5 3793838 3793892 -148743367 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 613 367 353 43 31 chr5 3794587 3794748 -148742511 - RSINE1 SINE B4 0 165 3 5 613 743 155 20 53 chr5 3795508 3795658 -148741601 + B1_Mm SINE Alu 3 147 0 5 613 201 74 0 0 chr5 3795659 3795686 -148741573 + (A)n Simple_repeat Simple_repeat 1 27 0 5 613 735 285 79 10 chr5 3796174 3796465 -148740794 + L1MC4 LINE L1 6658 6968 -1074 5 613 251 333 11 0 chr5 3796676 3796763 -148740496 + L1MC4 LINE L1 7173 7260 -782 5 613 2669 34 61 0 chr5 3796763 3797089 -148740170 - ORR1A1 LTR MaLR 0 346 1 5 613 13883 48 16 2 chr5 3797089 3798856 -148738403 - ORR1A1-int LTR MaLR 0 1792 1 5 613 2476 62 62 6 chr5 3798856 3799180 -148738079 - ORR1A1 LTR MaLR 0 346 5 5 613 353 366 72 10 chr5 3799241 3799434 -148737825 + L1MC4 LINE L1 7393 7597 -445 5 613 276 30 0 0 chr5 3800154 3800187 -148737072 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 614 28 48 0 0 chr5 3804366 3804408 -148732851 + AT_rich Low_complexity Low_complexity 1 42 0 5 614 25 51 0 0 chr5 3804435 3804474 -148732785 + AT_rich Low_complexity Low_complexity 1 39 0 5 614 24 32 0 0 chr5 3804840 3804871 -148732388 + AT_rich Low_complexity Low_complexity 1 31 0 5 614 791 261 150 18 chr5 3804961 3805187 -148732072 + Lx5 LINE L1 6794 7049 -1 5 614 198 0 0 0 chr5 3806038 3806060 -148731199 + (T)n Simple_repeat Simple_repeat 1 22 0 5 614 259 273 64 13 chr5 3806777 3806855 -148730404 + ID2 SINE ID 1 82 -1 5 614 297 276 0 13 chr5 3806859 3806936 -148730323 + ID_B1 SINE B4 149 224 0 5 614 243 276 13 38 chr5 3807161 3807240 -148730019 - MER5B DNA MER1_type -86 92 16 5 614 702 200 7 65 chr5 3807559 3807714 -148729545 - B1_Mur2 SINE Alu -3 146 1 5 614 25 0 0 0 chr5 3807721 3807746 -148729513 + AT_rich Low_complexity Low_complexity 1 25 0 5 614 281 250 42 83 chr5 3808268 3808364 -148728895 + MT2B LTR ERVL 173 264 -337 5 614 711 115 0 0 chr5 3808294 3808398 -148728861 + B1_Mur3 SINE Alu 45 148 -1 5 614 509 175 78 0 chr5 3808592 3808695 -148728564 + B3 SINE B2 1 111 -105 5 614 24 0 0 0 chr5 3808784 3808808 -148728451 + AT_rich Low_complexity Low_complexity 1 24 0 5 614 541 313 102 72 chr5 3808891 3809156 -148728103 - B4A SINE B4 -16 276 4 5 614 183 80 0 0 chr5 3809184 3809209 -148728050 + (TATAA)n Simple_repeat Simple_repeat 5 29 0 5 614 264 275 0 92 chr5 3809252 3809372 -148727887 - BC1_Mm scRNA scRNA -27 125 17 5 614 371 282 137 0 chr5 3809434 3809565 -148727694 + B1F SINE Alu 1 149 0 5 614 929 246 5 23 chr5 3809986 3810206 -148727053 + B3 SINE B2 1 216 0 5 614 320 329 133 65 chr5 3810794 3811057 -148726202 + B4 SINE B4 1 281 -11 5 614 24 0 0 0 chr5 3811057 3811081 -148726178 + AT_rich Low_complexity Low_complexity 1 24 0 5 614 1247 110 16 5 chr5 3811538 3811730 -148725529 + B2_Mm2 SINE B2 2 195 0 5 614 33 0 0 0 chr5 3812068 3812101 -148725158 + AT_rich Low_complexity Low_complexity 1 33 0 5 614 3195 142 68 16 chr5 3813783 3814340 -148722919 - Lx3C LINE L1 -2 6974 6389 5 614 197 292 8 124 chr5 3814658 3814779 -148722480 + MIR SINE MIR 84 196 -80 5 614 223 415 0 0 chr5 3814965 3815030 -148722229 + ID4 SINE ID 6 70 -13 5 614 467 295 93 0 chr5 3815884 3816013 -148721246 + B1F2 SINE Alu 9 149 0 5 614 296 312 52 45 chr5 3816070 3816204 -148721055 - B1_Mur3 SINE Alu -12 137 3 5 614 366 253 0 12 chr5 3816125 3816205 -148721054 - ID_B1 SINE B4 -63 161 83 5 614 561 226 174 41 chr5 3816272 3816620 -148720639 - Charlie1b DNA MER1_type 0 523 142 5 614 223 335 144 12 chr5 3816728 3816888 -148720371 + MIRc SINE MIR 37 217 -51 5 614 369 169 43 41 chr5 3817890 3818029 -148719230 + B3 SINE B2 8 211 -5 5 614 23 0 0 0 chr5 3818502 3818525 -148718734 + AT_rich Low_complexity Low_complexity 1 23 0 5 614 246 240 37 110 chr5 3818823 3818959 -148718300 - L1MB3 LINE L1 -2 6181 6056 5 614 409 31 0 15 chr5 3819895 3819960 -148717299 + L1Md_F2 LINE L1 6519 6582 0 5 614 330 26 0 0 chr5 3820040 3820079 -148717180 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 614 488 298 116 0 chr5 3820091 3820272 -148716987 - B4A SINE B4 -42 250 49 5 614 1288 58 0 28 chr5 3820541 3820717 -148716542 - B2_Mm2 SINE B2 -24 171 1 5 614 2595 93 45 108 chr5 3820882 3821365 -148715894 - RLTR11B LTR ERVK 0 453 1 5 614 2750 88 56 14 chr5 3821424 3821837 -148715422 - L1_Mus4 LINE L1 -4 6632 6203 5 614 725 304 0 16 chr5 3821841 3822035 -148715224 - B3A SINE B2 -7 191 1 5 614 1108 195 14 10 chr5 3822871 3823078 -148714181 - B3 SINE B2 -7 209 2 5 614 592 257 7 29 chr5 3823092 3823232 -148714027 - ID_B1 SINE B4 0 224 88 5 614 1045 79 43 0 chr5 3823283 3823422 -148713837 + B1_Mus2 SINE Alu 3 147 0 5 614 214 50 50 0 chr5 3823423 3823463 -148713796 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 5 614 21 0 0 0 chr5 3824387 3824408 -148712851 + AT_rich Low_complexity Low_complexity 1 21 0 5 614 310 298 0 19 chr5 3824605 3824711 -148712548 + L1MB4 LINE L1 6061 6164 -16 5 614 181 235 77 19 chr5 3824974 3825026 -148712233 + L3 LINE CR1 3979 4033 -456 5 614 308 267 11 11 chr5 3825275 3825366 -148711893 - B3 SINE B2 -1 215 125 5 614 306 0 0 0 chr5 3825395 3825429 -148711830 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 614 23 33 0 0 chr5 3825450 3825480 -148711779 + AT_rich Low_complexity Low_complexity 1 30 0 5 614 1389 258 38 147 chr5 3825482 3825624 -148711635 + L1_Rod LINE L1 3801 3919 -1928 5 614 2489 72 12 0 chr5 3825624 3825957 -148711302 - L1_Mus2 LINE L1 -3 6563 6227 5 614 1389 258 38 147 chr5 3825957 3826740 -148710519 + L1_Rod LINE L1 3920 4625 -1222 5 614 1985 76 7 20 chr5 3826839 3827134 -148710125 - L1VL4 LINE L1 -1586 1973 1683 5 614 2454 64 2 0 chr5 3827129 3827573 -148709686 - L1VL4 LINE L1 -2362 1197 753 5 614 2503 14 0 0 chr5 3827588 3827883 -148709376 - ORR1A0 LTR MaLR -51 295 1 5 614 8088 47 26 1 chr5 3827883 3828936 -148708323 - ORR1A0-int LTR MaLR 0 1792 714 5 614 3648 99 103 14 chr5 3828936 3829521 -148707738 - L1VL2 LINE L1 -5522 813 177 5 614 26 0 0 0 chr5 3829698 3829724 -148707535 + AT_rich Low_complexity Low_complexity 1 26 0 5 614 254 320 186 39 chr5 3830201 3830357 -148706902 + Cheshire DNA MER1_type 5 183 -2237 5 614 333 240 93 37 chr5 3830867 3830975 -148706284 + PB1D10 SINE Alu 1 114 -3 5 614 807 144 68 0 chr5 3832530 3832662 -148704597 - B1_Mur2 SINE Alu 0 149 9 5 614 28 0 0 0 chr5 3832781 3832809 -148704450 + AT_rich Low_complexity Low_complexity 1 28 0 5 614 304 239 0 15 chr5 3832813 3832881 -148704378 - MLT1A0 LTR MaLR -28 337 271 5 614 300 388 8 57 chr5 3832933 3833056 -148704203 + B1F SINE Alu 3 125 -24 5 614 588 238 120 16 chr5 3833220 3833412 -148703847 - B3 SINE B2 0 216 5 5 614 1027 211 5 25 chr5 3833645 3833849 -148703410 - B3 SINE B2 -15 201 2 5 614 557 346 28 28 chr5 3834155 3834366 -148702893 + B4A SINE B4 81 291 -1 5 614 209 211 0 0 chr5 3834370 3834408 -148702851 + A-rich Low_complexity Low_complexity 2 39 0 5 614 21 0 0 0 chr5 3834621 3834642 -148702617 + AT_rich Low_complexity Low_complexity 1 21 0 5 614 369 78 39 0 chr5 3834740 3834791 -148702468 + B3A SINE B2 2 54 -144 5 614 275 250 222 0 chr5 3834868 3834976 -148702283 - Tigger10 DNA Tigger -910 933 802 5 614 324 188 0 0 chr5 3835657 3835726 -148701533 + T-rich Low_complexity Low_complexity 1 69 0 5 614 303 204 30 30 chr5 3835876 3835977 -148701282 + (CATATA)n Simple_repeat Simple_repeat 5 105 0 5 614 455 179 109 36 chr5 3836608 3836718 -148700541 - ID_B1 SINE B4 -8 216 99 5 614 3069 265 64 49 chr5 3837243 3838500 -148698759 - Lx9 LINE L1 0 7644 6369 5 614 2921 222 81 72 chr5 3838648 3840133 -148697126 - L1_Rod LINE L1 -3456 2391 903 5 614 2255 121 33 17 chr5 3840292 3840652 -148696607 - Lx LINE L1 -2 6652 6287 5 614 499 259 63 122 chr5 3841848 3842356 -148694903 - Lx9 LINE L1 -1668 5976 5458 5 614 1509 278 132 56 chr5 3842614 3843227 -148694032 - Lx9 LINE L1 -505 5342 4700 5 614 360 219 333 0 chr5 3843227 3843332 -148693927 - B1_Mus1 SINE Alu -7 141 2 5 614 1509 278 132 56 chr5 3843332 3843380 -148693879 - Lx9 LINE L1 -1148 4699 4673 5 614 1237 191 141 66 chr5 3843380 3843728 -148693531 + ORR1D1 LTR MaLR 1 374 0 5 614 1509 278 132 56 chr5 3843728 3844364 -148692895 - Lx9 LINE L1 -1175 4672 3946 5 614 326 284 115 45 chr5 3844413 3844656 -148692603 + L1ME1 LINE L1 5735 5994 -185 5 614 571 237 6 136 chr5 3845642 3845818 -148691441 - RSINE1 SINE B4 -7 158 6 5 614 256 306 86 114 chr5 3846170 3846211 -148691048 + MLT1K LTR MaLR 59 93 -502 5 614 1074 175 36 18 chr5 3846211 3846432 -148690827 + URR1B DNA MER1_type 1 225 0 5 614 256 306 86 114 chr5 3846432 3846600 -148690659 + MLT1K LTR MaLR 94 262 -333 5 614 248 257 60 60 chr5 3846745 3846861 -148690398 + PB1D7 SINE Alu 1 116 -4 6 614 362 304 61 33 chr5 3846981 3847161 -148690098 + L1M5 LINE L1 4603 4787 -1359 6 614 255 253 94 10 chr5 3847357 3847453 -148689806 + LTR33 LTR ERVL 403 506 -9 6 614 252 0 0 0 chr5 3847458 3847486 -148689773 + (A)n Simple_repeat Simple_repeat 1 28 0 6 614 31 0 0 0 chr5 3847488 3847519 -148689740 + AT_rich Low_complexity Low_complexity 1 31 0 6 614 1107 113 10 51 chr5 3847579 3847774 -148689485 - RLTR13B1 LTR ERVK -569 324 138 6 614 696 192 8 0 chr5 3847912 3848042 -148689217 - RLTR13B1 LTR ERVK -770 132 2 6 614 427 252 14 7 chr5 3848044 3848188 -148689071 + Lx7 LINE L1 5711 5855 -1841 6 614 906 242 32 9 chr5 3848440 3848657 -148688602 + ID_B1 SINE B4 1 222 -2 6 614 404 253 0 28 chr5 3848743 3848868 -148688391 + B1_Mur1 SINE Alu 30 148 -1 6 614 556 112 10 20 chr5 3848868 3848968 -148688291 + (TAGA)n Simple_repeat Simple_repeat 1 99 0 6 614 1244 231 137 24 chr5 3849074 3849572 -148687687 - L1_Mur3 LINE L1 -6857 855 302 6 614 2127 181 19 19 chr5 3851663 3852080 -148685179 + MTC LTR MaLR 1 417 -4 6 614 786 119 0 0 chr5 3852385 3852528 -148684731 + (CTG)n Simple_repeat Simple_repeat 1 143 0 6 614 1644 242 54 94 chr5 3852555 3853321 -148683938 + RMER12 LTR ERVK 1 747 -1101 6 614 557 157 139 16 chr5 3853500 3853629 -148683630 + RMER12 LTR ERVK 1072 1216 -106 6 614 263 360 51 80 chr5 3853604 3853677 -148683582 - B4 SINE B4 -25 267 149 6 614 473 229 9 44 chr5 3853677 3853791 -148683468 - B1_Mur2 SINE Alu -35 114 5 6 614 263 360 51 80 chr5 3853791 3853879 -148683380 - B4 SINE B4 -25 148 1 6 614 382 283 65 0 chr5 3853898 3853990 -148683269 - B4A SINE B4 -194 98 1 6 614 267 312 12 0 chr5 3854427 3854507 -148682752 - ID4 SINE ID 0 83 3 6 614 15309 100 2 25 chr5 3854643 3857115 -148680144 - L1_Mm LINE L1 -1976 3907 1491 6 614 2867 157 47 4 chr5 3857111 3857622 -148679637 - L1VL1 LINE L1 -5885 537 5 6 614 344 154 32 24 chr5 3857896 3858022 -148679237 + (TG)n Simple_repeat Simple_repeat 2 128 0 6 614 244 148 64 24 chr5 3858040 3858165 -148679094 + (TG)n Simple_repeat Simple_repeat 1 130 0 6 614 3005 288 27 21 chr5 3859193 3860255 -148677004 + Lx9 LINE L1 6341 7409 -235 6 614 309 109 0 0 chr5 3860292 3860338 -148676921 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 614 1075 186 36 18 chr5 3860862 3861081 -148676178 - URR1B DNA MER1_type 0 225 3 6 614 396 0 0 0 chr5 3861711 3861755 -148675504 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 614 225 306 0 0 chr5 3861755 3861866 -148675393 + (CA)n Simple_repeat Simple_repeat 2 112 0 6 614 1062 204 34 5 chr5 3861885 3862092 -148675167 + B3 SINE B2 1 213 -3 6 614 1051 84 0 0 chr5 3862160 3862303 -148674956 - L1_Mus2 LINE L1 -1 6565 6423 6 614 251 240 25 23 chr5 3862580 3862678 -148674581 - L1MD LINE L1 -696 5604 5506 6 614 368 301 113 14 chr5 3862950 3863365 -148673894 + L1MA4A LINE L1 5450 5905 -398 6 614 920 202 22 11 chr5 3864980 3865160 -148672099 + B3A SINE B2 1 182 -16 6 614 734 225 7 7 chr5 3865170 3865309 -148671950 - B1_Mur2 SINE Alu -7 142 4 6 614 26 0 0 0 chr5 3865344 3865370 -148671889 + AT_rich Low_complexity Low_complexity 1 26 0 6 614 22 35 0 0 chr5 3866328 3866357 -148670902 + AT_rich Low_complexity Low_complexity 1 29 0 6 614 525 16 0 0 chr5 3866694 3866756 -148670503 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 614 1275 113 0 1 chr5 3866771 3867495 -148669764 + (GGA)n Simple_repeat Simple_repeat 1 722 0 6 614 261 0 0 0 chr5 3867551 3867580 -148669679 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 614 688 157 25 8 chr5 3867758 3867880 -148669379 - B1_Mur1 SINE Alu -6 143 20 6 614 2492 94 11 3 chr5 3867925 3868287 -148668972 + L1_Mus3 LINE L1 6270 6634 -4 6 614 604 305 65 27 chr5 3868425 3868688 -148668571 - LTR88b LTR Gypsy? -530 307 35 6 614 213 39 0 0 chr5 3869448 3869474 -148667785 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 614 1231 251 114 89 chr5 3869478 3870120 -148667139 - Lx9 LINE L1 -171 7473 6816 6 614 691 210 20 15 chr5 3870160 3870380 -148666879 - RLTR17 LTR ERVK -76 616 284 6 614 2923 173 101 134 chr5 3870378 3870978 -148666281 + RLTR25A LTR ERVK 142 725 -303 6 614 4551 50 0 9 chr5 3870978 3871544 -148665715 + L1_Mus1 LINE L1 6007 6567 0 6 614 2357 173 102 136 chr5 3871544 3871599 -148665660 + RLTR25A LTR ERVK 726 774 -254 6 614 497 182 104 32 chr5 3871577 3871702 -148665557 + RLTR25A LTR ERVK 895 1028 0 6 614 1234 238 109 9 chr5 3871702 3872049 -148665210 - Lx9 LINE L1 -921 6723 6342 6 614 655 261 34 56 chr5 3872182 3872256 -148665003 - Lx9 LINE L1 -1675 5969 5903 6 614 2577 89 39 32 chr5 3872256 3872662 -148664597 - RLTR9E LTR ERVK 0 409 1 6 614 741 231 27 30 chr5 3872662 3872809 -148664450 - Lx9 LINE L1 -1742 5902 5719 6 614 3530 74 11 4 chr5 3872809 3873282 -148663977 - L1_Mus3 LINE L1 -2 6636 6161 6 614 741 227 26 26 chr5 3873282 3873384 -148663875 - Lx9 LINE L1 -129 5718 5617 6 614 352 225 2 31 chr5 3873773 3873861 -148663398 - MER57E1 LTR ERV1 -306 96 16 6 614 4360 161 25 22 chr5 3873904 3874797 -148662462 + Lx4B LINE L1 1142 2049 -3828 6 614 210 37 0 0 chr5 3874797 3874824 -148662435 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 614 630 58 0 0 chr5 3874824 3874910 -148662349 + (GA)n Simple_repeat Simple_repeat 2 88 0 6 614 4360 161 25 23 chr5 3874910 3874926 -148662333 + Lx4B LINE L1 2050 2058 -3819 6 614 1524 144 73 32 chr5 3874926 3875242 -148662017 + ORR1A4 LTR MaLR 1 329 0 6 614 4360 161 25 23 chr5 3875242 3875337 -148661922 + Lx4B LINE L1 2059 2153 -3724 6 614 20185 135 24 20 chr5 3876251 3877350 -148659909 + Lx4B LINE L1 2140 3235 -2642 6 614 1149 8 0 0 chr5 3877350 3877480 -148659779 + (GA)n Simple_repeat Simple_repeat 1 130 0 6 614 20185 135 24 20 chr5 3877480 3877985 -148659274 + Lx4B LINE L1 3236 3739 -2138 6 614 3184 39 18 3 chr5 3877985 3878373 -148658886 + MTA_Mm LTR MaLR 3 396 0 6 614 20185 135 24 20 chr5 3878373 3879354 -148657905 + Lx4B LINE L1 3740 4727 -1150 6 614 315 0 0 0 chr5 3879354 3879389 -148657870 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 614 20185 145 31 19 chr5 3879389 3881648 -148655611 + Lx4B LINE L1 4728 7036 -22 6 614 1846 143 73 0 chr5 3881745 3882060 -148655199 - ORR1A1 LTR MaLR -8 338 1 6 614 538 301 0 7 chr5 3882108 3882252 -148655007 - B1_Mur1 SINE Alu -5 144 2 6 614 511 257 105 8 chr5 3882253 3882543 -148654716 + L1MA4 LINE L1 4823 5134 -752 6 614 2643 173 92 2 chr5 3882673 3883205 -148654054 + RMER1B Other Other 473 1052 -14 6 614 23 0 0 0 chr5 3883226 3883249 -148654010 + AT_rich Low_complexity Low_complexity 1 23 0 6 614 242 146 83 0 chr5 3883610 3883658 -148653601 + L1MA4 LINE L1 5155 5206 -937 6 614 342 230 72 5 chr5 3883756 3883935 -148653324 + L1MD LINE L1 5239 5431 -725 6 614 850 274 4 82 chr5 3883946 3884177 -148653082 + ID_B1 SINE B4 2 214 -10 6 614 351 0 0 0 chr5 3884177 3884216 -148653043 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 614 526 296 31 59 chr5 3884230 3884553 -148652706 + L1MA4 LINE L1 5446 5759 -541 6 614 325 321 12 0 chr5 3884556 3884718 -148652541 + L1MA4 LINE L1 5726 5889 -411 6 614 242 241 241 42 chr5 3884880 3885071 -148652188 - RLTR23 LTR ERV1 0 430 202 6 614 461 202 98 32 chr5 3885092 3885215 -148652044 - RLTR23 LTR ERV1 -292 138 8 6 614 1007 300 94 38 chr5 3885597 3886023 -148651236 + LTR40b LTR ERVL 13 462 0 6 614 245 229 115 0 chr5 3886072 3886133 -148651126 + B4A SINE B4 9 76 -216 6 614 479 265 53 19 chr5 3886550 3886758 -148650501 - L1M3 LINE L1 -454 5735 5521 6 614 286 258 8 46 chr5 3886769 3886905 -148650354 + Lx7 LINE L1 5657 5817 -1879 6 614 710 283 84 0 chr5 3887637 3887828 -148649431 + Tigger5 DNA MER2_type 1 207 -2199 6 614 834 279 190 10 chr5 3888778 3889173 -148648086 - Lx9 LINE L1 0 7644 7179 6 614 945 185 48 43 chr5 3889301 3889487 -148647772 + B2_Mm2 SINE B2 2 188 -7 6 614 400 143 78 0 chr5 3889795 3889872 -148647387 - L1_Mm LINE L1 -1534 4349 4267 6 614 491 273 57 19 chr5 3890395 3890552 -148646707 + RSINE1 SINE B4 3 165 0 6 614 56 29 0 0 chr5 3890570 3890640 -148646619 + AT_rich Low_complexity Low_complexity 1 70 0 6 614 283 163 68 7 chr5 3892166 3892314 -148644945 + (TA)n Simple_repeat Simple_repeat 2 158 0 6 614 284 246 0 40 chr5 3892456 3892532 -148644727 + ID4_ SINE ID 10 82 -1 6 614 220 337 32 32 chr5 3892532 3892551 -148644708 + RSINE1 SINE B4 11 105 -60 6 614 300 27 0 0 chr5 3893244 3893281 -148643978 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 614 198 0 0 0 chr5 3894731 3894753 -148642506 + (TTTC)n Simple_repeat Simple_repeat 1 22 0 6 614 3376 157 61 13 chr5 3895276 3895967 -148641292 + RMER6A LTR ERVK 1 756 0 6 614 1387 164 9 0 chr5 3895975 3896194 -148641065 - MTC LTR MaLR 0 421 201 6 614 777 60 8 17 chr5 3896194 3896313 -148640946 - L1Md_F2 LINE L1 0 6582 6465 6 614 3756 26 45 2 chr5 3896313 3896731 -148640528 + RLTR10C LTR ERVK 1 436 0 6 614 1450 52 0 0 chr5 3896731 3896903 -148640356 + MMERVK10C-int LTR ERVK 1 172 -7409 6 614 230 321 0 0 chr5 3896903 3896956 -148640303 + RLTR27 LTR ERVK 223 275 -34 6 614 821 126 0 0 chr5 3896956 3897075 -148640184 + MMERVK10C-int LTR ERVK 225 343 -7238 6 614 786 205 5 10 chr5 3897073 3897265 -148639994 + MMERVK10C-int LTR ERVK 729 919 -6662 6 614 463 139 0 92 chr5 3897265 3897384 -148639875 + MMERVK10C-int LTR ERVK 845 952 -6629 6 614 847 172 285 8 chr5 3897476 3897711 -148639548 + MMERVK10C-int LTR ERVK 312 611 -4795 6 614 293 252 148 40 chr5 3897707 3897856 -148639403 + MMERVK10C-int LTR ERVK 524 688 -5449 6 614 388 138 6 58 chr5 3897840 3897968 -148639291 + MMERVK10C-int LTR ERVK 1721 1947 -5634 6 614 44492 27 0 10 chr5 3897974 3903055 -148634204 + MMERVK10C-int LTR ERVK 2552 7581 0 6 614 3823 28 28 7 chr5 3903055 3903482 -148633777 + RLTR10C LTR ERVK 1 436 0 6 614 3400 43 0 0 chr5 3903482 3903881 -148633378 - L1Md_F2 LINE L1 -112 6470 6072 6 614 633 40 0 0 chr5 3903878 3903954 -148633305 + L1Md_F2 LINE L1 6000 6075 -507 6 614 421 193 451 7 chr5 3903956 3904100 -148633159 - MTC LTR MaLR -211 210 3 6 614 3346 27 0 0 chr5 3905824 3906193 -148631066 - L1Md_A LINE L1 0 6582 6214 6 614 783 0 0 0 chr5 3906263 3906350 -148630909 + (TTC)n Simple_repeat Simple_repeat 1 87 0 6 614 1172 128 17 6 chr5 3906350 3906523 -148630736 - B2_Mm1t SINE B2 -16 177 3 6 614 322 269 11 11 chr5 3907301 3907395 -148629864 - MER5B DNA MER1_type -8 170 77 6 614 277 282 198 40 chr5 3908090 3908267 -148628992 + Tigger16a DNA Tigger 452 656 -277 6 614 453 269 85 25 chr5 3908548 3908666 -148628593 - B1_Mur1 SINE Alu -1 148 24 6 614 509 211 0 8 chr5 3910358 3910482 -148626777 + (TA)n Simple_repeat Simple_repeat 1 123 0 6 614 220 309 0 0 chr5 3910687 3910742 -148626517 + CT-rich Low_complexity Low_complexity 3 57 0 6 614 379 151 129 0 chr5 3910844 3911038 -148626221 + (CACTG)n Simple_repeat Simple_repeat 1 219 0 6 614 230 319 55 0 chr5 3911196 3911287 -148625972 - L1M5 LINE L1 -504 5620 5525 6 614 324 318 119 36 chr5 3911483 3911702 -148625557 - Lx8 LINE L1 -3 7470 7234 6 614 230 0 0 32 chr5 3911707 3911738 -148625521 + (CAA)n Simple_repeat Simple_repeat 2 31 0 6 614 311 272 57 19 chr5 3911739 3911844 -148625415 - Lx8 LINE L1 -285 7188 7080 6 614 1789 149 86 9 chr5 3911857 3912183 -148625076 - RLTR17 LTR ERVK -341 351 1 6 614 317 127 95 0 chr5 3912729 3912792 -148624467 - Lx5 LINE L1 0 7050 6982 6 614 4281 59 2 6 chr5 3912815 3913326 -148623933 - L1_Mus1 LINE L1 -3 6564 6056 7 614 3802 189 49 1 chr5 3913342 3914037 -148623222 - Lx5 LINE L1 -90 6960 6233 6 614 6207 148 44 9 chr5 3914030 3915245 -148622014 + Lx2B LINE L1 4798 6071 -929 7 614 218 354 49 33 chr5 3915270 3915361 -148621898 + MIR SINE MIR 52 148 -114 7 614 192 77 0 0 chr5 3915361 3915387 -148621872 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 614 218 354 49 33 chr5 3915387 3915479 -148621780 + MIR SINE MIR 149 238 -24 7 614 23 54 0 0 chr5 3916251 3916288 -148620971 + AT_rich Low_complexity Low_complexity 1 37 0 7 614 6326 226 28 11 chr5 3916571 3917910 -148619349 - Lx6 LINE L1 -4 7456 6094 7 614 363 259 68 34 chr5 3918117 3918265 -148618994 - L1ME3 LINE L1 -237 5925 5773 7 614 3253 40 45 0 chr5 3918468 3918847 -148618412 - MTA_Mm LTR MaLR 0 396 1 7 614 1207 49 0 27 chr5 3919023 3919169 -148618090 - B1_Mus2 SINE Alu -5 142 1 7 614 269 320 129 0 chr5 3919191 3919338 -148617921 - MER3 DNA MER1_type -10 199 34 7 614 284 261 32 32 chr5 3920096 3920191 -148617068 + MLT1A1 LTR MaLR 307 401 -7 7 614 404 309 89 0 chr5 3920223 3920346 -148616913 + ID_B1 SINE B4 84 217 -7 7 614 289 356 67 20 chr5 3920382 3920531 -148616728 - L2a LINE L2 -301 3125 2970 7 614 797 279 110 102 chr5 3920572 3920946 -148616313 + MTC LTR MaLR 1 379 0 7 614 911 242 40 141 chr5 3920946 3921389 -148615870 + MTC-int LTR MaLR 1 340 -918 7 614 1346 20 0 0 chr5 3921389 3921535 -148615724 + B1_Mus2 SINE Alu 2 147 0 7 614 240 264 36 130 chr5 3921535 3921650 -148615609 + MTC-int LTR MaLR 625 676 -582 7 614 304 231 217 37 chr5 3921743 3921847 -148615412 - RLTR15 LTR ERVK -89 270 146 7 614 252 0 0 0 chr5 3921847 3921875 -148615384 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 7 614 304 243 168 42 chr5 3921875 3921995 -148615264 - RLTR15 LTR ERVK -324 204 49 7 614 788 304 47 23 chr5 3922033 3922285 -148614974 + MTC-int LTR MaLR 966 1219 -361 7 614 266 273 4 25 chr5 3922534 3922610 -148614649 + ID4 SINE ID 4 73 -79 7 614 246 280 0 0 chr5 3922916 3922966 -148614293 - ID4 SINE ID -30 53 4 7 614 457 279 18 77 chr5 3922974 3923195 -148614064 - L1M2 LINE L1 -3747 2396 2189 7 614 722 206 166 24 chr5 3923786 3924039 -148613220 - Lx9 LINE L1 -31 7613 7325 7 614 333 0 0 0 chr5 3924119 3924156 -148613103 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 614 27 49 0 0 chr5 3924459 3924500 -148612759 + AT_rich Low_complexity Low_complexity 1 41 0 7 614 5445 51 5 0 chr5 3924978 3925604 -148611655 + L1Md_F2 LINE L1 5941 6569 -13 7 614 30 0 0 0 chr5 3926324 3926354 -148610905 + AT_rich Low_complexity Low_complexity 1 30 0 7 614 183 358 94 31 chr5 3926371 3926498 -148610761 + MIR3 SINE MIR 12 146 -62 7 614 387 91 18 0 chr5 3927593 3927663 -148609596 - L1_Mur2 LINE L1 -3591 2289 2219 7 614 269 243 37 0 chr5 3927649 3927756 -148609503 + Lx5 LINE L1 6939 7049 -1 7 614 200 219 0 30 chr5 3928207 3928273 -148608986 + (CCCG)n Simple_repeat Simple_repeat 3 66 0 7 614 520 128 0 27 chr5 3928534 3928646 -148608613 + (CTGGGG)n Simple_repeat Simple_repeat 4 112 0 7 614 190 0 0 62 chr5 3929016 3929048 -148608211 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 7 614 667 111 0 39 chr5 3929472 3929575 -148607684 + MTC LTR MaLR 323 421 0 7 614 376 295 48 48 chr5 3929915 3930061 -148607198 - B1F SINE Alu -1 148 3 7 614 562 339 18 77 chr5 3930282 3930554 -148606705 + B4A SINE B4 1 256 -36 7 614 1099 204 62 149 chr5 3931682 3932131 -148605128 + RMER1A Other Other 489 898 -132 7 615 286 160 0 0 chr5 3932161 3932211 -148605048 + MTEa LTR MaLR 326 375 -4 7 615 24 32 0 0 chr5 3932313 3932344 -148604915 + AT_rich Low_complexity Low_complexity 1 31 0 7 615 269 26 26 0 chr5 3932508 3932546 -148604713 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 615 264 132 0 0 chr5 3932547 3932585 -148604674 - ID_B1 SINE B4 -13 211 174 7 615 274 178 151 0 chr5 3932555 3932628 -148604631 - PB1D10 SINE Alu -24 93 10 7 615 354 23 0 0 chr5 3933831 3933874 -148603385 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7 615 1249 28 0 40 chr5 3933874 3934012 -148603247 - B1_Mus1 SINE Alu -12 136 1 7 615 983 221 62 0 chr5 3934045 3934240 -148603019 - B3 SINE B2 -9 207 1 7 615 924 135 15 0 chr5 3934485 3934618 -148602641 - B1_Mus1 SINE Alu -13 135 1 7 615 372 43 0 0 chr5 3934711 3934757 -148602502 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 615 261 75 0 0 chr5 3934759 3934799 -148602460 + (TCTCTG)n Simple_repeat Simple_repeat 6 45 0 7 615 391 290 142 28 chr5 3935256 3935678 -148601581 - L1M4 LINE L1 -365 5809 5340 7 615 22 0 0 0 chr5 3935714 3935736 -148601523 + AT_rich Low_complexity Low_complexity 1 22 0 7 615 204 239 0 21 chr5 3935739 3935786 -148601473 + (CATG)n Simple_repeat Simple_repeat 1 46 0 7 615 225 0 0 0 chr5 3936494 3936519 -148600740 + (T)n Simple_repeat Simple_repeat 1 25 0 7 615 853 285 84 38 chr5 3936823 3937166 -148600093 - ORR1E LTR MaLR 0 359 1 7 615 503 264 9 9 chr5 3937251 3937358 -148599901 + RSINE1 SINE B4 42 148 -17 7 615 223 295 52 52 chr5 3937620 3937756 -148599503 + MIR SINE MIR 88 223 -39 7 615 521 278 153 11 chr5 3937758 3937947 -148599312 + B3 SINE B2 1 216 0 7 615 824 263 135 45 chr5 3939321 3939655 -148597604 - ORR1D2 LTR MaLR -4 366 3 7 615 1933 180 6 3 chr5 3939884 3940223 -148597036 - Lx9 LINE L1 -704 6940 6601 7 615 425 274 16 49 chr5 3940296 3940308 -148596951 - ORR1E LTR MaLR -219 140 133 7 615 469 232 62 31 chr5 3940308 3940437 -148596822 - B1_Mur1 SINE Alu -16 133 1 7 615 425 274 16 49 chr5 3940437 3940547 -148596712 - ORR1E LTR MaLR -227 132 22 7 615 26 0 0 0 chr5 3941593 3941619 -148595640 + AT_rich Low_complexity Low_complexity 1 26 0 7 615 9366 121 33 9 chr5 3941717 3943059 -148594200 - Lx4A LINE L1 -2 7056 5678 7 615 2841 102 23 5 chr5 3943059 3943455 -148593804 - RLTR9D LTR ERVK 0 403 1 7 615 14169 120 17 152 chr5 3943455 3946430 -148590829 - Lx4A LINE L1 -206 5671 3134 7 615 330 273 160 109 chr5 3947205 3947361 -148589898 + B4A SINE B4 8 171 -121 7 615 360 148 0 0 chr5 3947455 3947516 -148589743 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 615 191 171 0 0 chr5 3949062 3949097 -148588162 - L2b LINE L2 -5 3370 3336 7 615 395 178 14 0 chr5 3950040 3950113 -148587146 + B1_Mur2 SINE Alu 74 147 -2 7 615 274 342 0 12 chr5 3950458 3950538 -148586721 - ID4 SINE ID -3 80 2 7 615 218 274 27 0 chr5 3950544 3950617 -148586642 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 615 201 39 0 0 chr5 3950627 3950653 -148586606 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 7 615 508 214 111 56 chr5 3951025 3951223 -148586036 - B3 SINE B2 -7 209 1 7 615 235 289 41 0 chr5 3952419 3952516 -148584743 + L1M2 LINE L1 2466 2566 -4283 7 615 226 267 39 26 chr5 3952792 3952869 -148584390 + L1M2 LINE L1 2862 2939 -3903 7 615 225 319 7 94 chr5 3953147 3953296 -148583963 - MLT1K LTR MaLR -151 444 309 7 615 779 227 214 0 chr5 3953560 3953789 -148583470 + B4A SINE B4 1 278 -14 7 615 712 308 67 0 chr5 3954017 3954225 -148583034 + B4A SINE B4 2 223 -69 7 615 23 0 0 0 chr5 3954753 3954776 -148582483 + AT_rich Low_complexity Low_complexity 1 23 0 7 615 3529 86 16 18 chr5 3955293 3955790 -148581469 + Lx LINE L1 6156 6651 -3 7 615 219 146 0 0 chr5 3956466 3956507 -148580752 + (T)n Simple_repeat Simple_repeat 1 41 0 7 615 1281 34 7 0 chr5 3956508 3956654 -148580605 - B1_Mus1 SINE Alu -1 147 1 7 615 1423 193 157 25 chr5 3956862 3957218 -148580041 + MTC LTR MaLR 19 421 0 7 615 336 334 120 43 chr5 3958501 3958851 -148578408 - MamRep605 Unknown Unknown -152 724 348 7 615 573 15 0 0 chr5 3958951 3959017 -148578242 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 615 22 35 0 0 chr5 3959696 3959725 -148577534 + AT_rich Low_complexity Low_complexity 1 29 0 7 615 791 274 168 29 chr5 3963620 3963966 -148573293 - MTD LTR MaLR 0 419 26 7 615 265 314 108 101 chr5 3964134 3964455 -148572804 - L2c LINE L2 -67 3308 2987 7 615 885 157 238 0 chr5 3964592 3964764 -148572495 + B3 SINE B2 3 215 -1 7 615 344 259 35 44 chr5 3965559 3965672 -148571587 + PB1D10 SINE Alu 3 114 -3 7 615 301 330 106 49 chr5 3965849 3966094 -148571165 + L1M5 LINE L1 3102 3360 -2786 7 615 206 139 47 0 chr5 3966923 3966966 -148570293 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 7 615 184 366 49 0 chr5 3967688 3967770 -148569489 + MER5A DNA MER1_type 86 171 -18 7 615 189 369 27 9 chr5 3969714 3969826 -148567433 - L2 LINE L2 -958 2461 2348 7 615 29 60 0 0 chr5 3971836 3971886 -148565373 + AT_rich Low_complexity Low_complexity 1 50 0 7 615 369 281 8 66 chr5 3972345 3972467 -148564792 + B1_Mur1 SINE Alu 2 116 -33 7 615 365 345 151 0 chr5 3974388 3974632 -148562627 + B4A SINE B4 2 282 -10 7 615 279 0 0 0 chr5 3974685 3974716 -148562543 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 615 25 0 0 0 chr5 3977867 3977892 -148559367 + AT_rich Low_complexity Low_complexity 1 25 0 7 615 739 281 308 50 chr5 3978196 3978695 -148558564 + L1_Rod LINE L1 5090 5723 -124 7 615 1477 61 44 0 chr5 3978695 3978875 -148558384 - B2_Mm2 SINE B2 -6 189 2 7 615 739 284 58 67 chr5 3978875 3978997 -148558262 + L1_Rod LINE L1 5724 5839 -8 7 615 642 192 146 0 chr5 3979101 3979231 -148558028 + B1_Mur4 SINE Alu 2 150 0 7 615 22 0 0 0 chr5 3979452 3979474 -148557785 + AT_rich Low_complexity Low_complexity 1 22 0 7 615 184 170 62 21 chr5 3979754 3979802 -148557457 - L4 LINE RTE -1350 679 630 7 615 639 117 0 91 chr5 3980596 3980793 -148556466 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 7 615 250 212 70 12 chr5 3981448 3981534 -148555725 - Lx9 LINE L1 -23 7621 7531 8 615 38765 31 1 0 chr5 3981534 3988567 -148548692 - L1Md_T LINE L1 0 6585 1 8 615 351 60 0 0 chr5 3988602 3988652 -148548607 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 615 507 295 39 39 chr5 3990736 3990891 -148546368 + RSINE1 SINE B4 11 165 0 8 615 23 33 0 0 chr5 3991223 3991253 -148546006 + AT_rich Low_complexity Low_complexity 1 30 0 8 615 5256 59 8 3 chr5 3991366 3991999 -148545260 + L1_Mus1 LINE L1 5932 6567 0 8 615 222 227 0 0 chr5 3992315 3992359 -148544900 + CT-rich Low_complexity Low_complexity 1 44 0 8 615 267 309 12 0 chr5 3992359 3992443 -148544816 - PB1D10 SINE Alu -1 116 32 8 615 386 299 139 0 chr5 3993444 3993581 -148543678 + MTEa LTR MaLR 12 167 -212 8 615 296 246 49 0 chr5 3993682 3993804 -148543455 + ORR1B1-int LTR MaLR 627 754 -755 8 615 1107 63 0 2 chr5 3993703 3993846 -148543413 + B1_Mus1 SINE Alu 8 143 -5 8 615 255 238 0 16 chr5 3993855 3993919 -148543340 + MTEa LTR MaLR 306 368 -11 8 615 315 333 30 0 chr5 3994063 3994162 -148543097 - L1MEe LINE L1 -4451 403 302 8 615 231 275 39 104 chr5 3994598 3994675 -148542584 - B1F2 SINE Alu -77 72 1 8 615 411 334 19 37 chr5 3994675 3994756 -148542503 - ID SINE ID -215 77 2 8 615 207 100 0 0 chr5 3994781 3994811 -148542448 + (TCC)n Simple_repeat Simple_repeat 2 31 0 8 615 744 174 35 21 chr5 3994843 3994984 -148542275 - B1_Mus2 SINE Alu 0 147 5 8 615 231 36 0 0 chr5 3995005 3995033 -148542226 + (T)n Simple_repeat Simple_repeat 1 28 0 8 615 654 48 0 0 chr5 3995410 3995494 -148541765 - B1_Mm SINE Alu 0 147 64 8 615 238 94 0 0 chr5 3995466 3995498 -148541761 - PB1D7 SINE Alu -27 93 62 8 615 233 147 0 0 chr5 3995468 3995502 -148541757 - 4.5SRNA scRNA scRNA -8 86 53 8 615 192 340 40 109 chr5 3995638 3995813 -148541446 + MIRb SINE MIR 42 204 -64 8 615 326 88 105 0 chr5 3996223 3996280 -148540979 + B1_Mm SINE Alu 85 147 0 8 615 456 285 63 42 chr5 3996487 3996630 -148540629 + B1F SINE Alu 4 149 0 8 615 22 0 0 0 chr5 3996725 3996747 -148540512 + AT_rich Low_complexity Low_complexity 1 22 0 8 615 25 0 0 0 chr5 3996911 3996936 -148540323 + AT_rich Low_complexity Low_complexity 1 25 0 8 615 22 0 0 0 chr5 3997078 3997100 -148540159 + AT_rich Low_complexity Low_complexity 1 22 0 8 615 9416 148 58 25 chr5 3997125 3998961 -148538298 - Lx4A LINE L1 -4 7456 5587 8 615 5548 135 63 13 chr5 3998959 4000000 -148537259 + L1_Mur2 LINE L1 2900 3992 -1885 8 615 4418 137 66 11 chr5 4000000 4000929 -148536330 + L1_Mur2 LINE L1 3993 5052 -825 1 615 242 86 29 0 chr5 4000929 4000964 -148536295 + L1_Mur2 LINE L1 5547 5582 -295 1 615 1267 175 70 116 chr5 4000961 4001316 -148535943 - Lx6 LINE L1 -468 6992 6654 2 615 510 306 18 60 chr5 4001993 4002105 -148535154 + RSINE1 SINE B4 6 120 -45 3 615 711 112 0 0 chr5 4002105 4002212 -148535047 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 615 510 306 18 60 chr5 4002212 4002266 -148534993 + RSINE1 SINE B4 121 165 0 3 615 26 0 0 0 chr5 4002837 4002863 -148534396 + AT_rich Low_complexity Low_complexity 1 26 0 5 615 1078 87 0 0 chr5 4002901 4003039 -148534220 - L1_Mus4 LINE L1 -144 6494 6357 6 615 719 80 26 0 chr5 4003039 4003152 -148534107 + L1_Mus4 LINE L1 6506 6621 -15 6 615 180 176 0 0 chr5 4006372 4006406 -148530853 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 7 615 24 53 0 0 chr5 4006544 4006582 -148530677 + AT_rich Low_complexity Low_complexity 1 38 0 8 615 573 242 86 21 chr5 4007163 4007349 -148529910 + B3A SINE B2 1 198 0 9 615 214 211 0 0 chr5 4007430 4007468 -148529791 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1 615 301 187 13 13 chr5 4008018 4008094 -148529165 + CT-rich Low_complexity Low_complexity 2 77 0 1 615 593 174 180 8 chr5 4008102 4008176 -148529083 - B1_Mur4 SINE Alu -7 143 50 1 615 199 29 56 28 chr5 4008176 4008212 -148529047 + (CCTG)n Simple_repeat Simple_repeat 2 38 0 1 615 593 174 180 8 chr5 4008212 4008259 -148529000 - B1_Mur4 SINE Alu -101 49 1 1 615 313 194 70 70 chr5 4010966 4011066 -148526193 - B1F SINE Alu -1 148 49 1 615 1082 49 12 117 chr5 4011661 4011823 -148525436 - B1_Mm SINE Alu -1 146 2 1 615 1141 187 51 5 chr5 4012609 4012824 -148524435 + URR1A DNA MER1_type 2 226 0 1 615 715 235 12 41 chr5 4013149 4013318 -148523941 - B4A SINE B4 0 292 129 1 615 4050 175 71 13 chr5 4014582 4015414 -148521845 - L1_Mur2 LINE L1 -2935 2942 2063 1 615 644 235 134 4 chr5 4015437 4015676 -148521583 - L1_Mur2 LINE L1 -5854 1232 963 1 615 970 79 0 0 chr5 4015953 4016080 -148521179 + B1_Mus1 SINE Alu 12 138 -10 1 615 227 31 0 30 chr5 4016080 4016113 -148521146 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 615 10971 82 27 1 chr5 4017161 4018585 -148518674 - MERVL-int LTR ERVL -2597 2888 1427 2 615 2521 92 11 3 chr5 4018585 4018934 -148518325 - MT2C_Mm LTR ERVL -123 352 1 2 615 188 360 61 0 chr5 4019033 4019147 -148518112 - L2b LINE L2 -24 3402 3282 2 615 217 254 0 0 chr5 4019271 4019326 -148517933 + B3 SINE B2 2 56 -160 2 615 263 255 269 0 chr5 4019423 4019564 -148517695 - L2b LINE L2 -339 3080 2902 2 615 192 40 0 0 chr5 4019689 4019714 -148517545 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 615 315 0 0 0 chr5 4020123 4020158 -148517101 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 615 897 214 71 0 chr5 4020172 4020340 -148516919 - Lx8 LINE L1 -153 7320 7141 2 615 258 196 142 0 chr5 4020717 4020809 -148516450 - Lx8 LINE L1 -2173 5822 5660 2 615 628 269 45 12 chr5 4020920 4021099 -148516160 - B3 SINE B2 -9 189 3 2 615 180 0 0 0 chr5 4021099 4021119 -148516140 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 615 1930 150 45 3 chr5 4021245 4021579 -148515680 - ORR1C2 LTR MaLR 0 384 37 3 615 690 288 83 28 chr5 4021756 4021974 -148515285 + B4A SINE B4 7 236 -56 3 615 626 304 50 32 chr5 4022013 4022292 -148514967 + B4A SINE B4 2 285 -7 3 615 477 0 0 0 chr5 4022297 4022350 -148514909 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 615 186 43 0 0 chr5 4023662 4023685 -148513574 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 615 205 88 0 29 chr5 4025187 4025222 -148512037 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 615 1265 187 27 0 chr5 4025763 4025982 -148511277 + URR1B DNA MER1_type 1 225 0 3 615 7994 66 21 3 chr5 4026102 4027126 -148510133 - L1_Mus3 LINE L1 -1 6637 5595 3 615 1721 69 0 9 chr5 4027125 4027358 -148509901 + L1_Mm LINE L1 4157 4387 -1496 3 615 27 100 0 0 chr5 4027363 4027453 -148509806 + AT_rich Low_complexity Low_complexity 1 90 0 3 615 216 0 0 0 chr5 4029290 4029314 -148507945 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4 615 1779 103 40 7 chr5 4029314 4029588 -148507671 - Lx3_Mus LINE L1 -1 7008 6726 4 615 321 51 0 0 chr5 4029590 4029629 -148507630 + L1_Mur1 LINE L1 5156 5194 -692 4 615 1358 74 40 0 chr5 4030616 4030792 -148506467 - B2_Mm2 SINE B2 -10 185 3 4 615 23 78 0 0 chr5 4032358 4032409 -148504850 + AT_rich Low_complexity Low_complexity 1 51 0 4 615 468 136 0 0 chr5 4032473 4032539 -148504720 + B1_Mur2 SINE Alu 28 93 -56 4 615 359 274 34 17 chr5 4032958 4033077 -148504182 + (TGGA)n Simple_repeat Simple_repeat 1 121 0 4 615 6300 3 0 0 chr5 4033268 4033922 -148503337 - L1Md_A LINE L1 0 6582 5929 4 615 842 208 21 0 chr5 4034549 4034693 -148502566 - B1_Mur1 SINE Alu -1 148 2 4 615 22 56 0 0 chr5 4034941 4034977 -148502282 + AT_rich Low_complexity Low_complexity 1 36 0 4 615 229 259 139 12 chr5 4035007 4035093 -148502166 + ID_B1 SINE B4 2 98 -126 5 615 1695 132 148 43 chr5 4035219 4035591 -148501668 + MTC LTR MaLR 3 413 -8 5 615 1976 111 3 62 chr5 4035604 4035942 -148501317 - ORR1A3 LTR MaLR -8 318 1 5 615 411 318 132 0 chr5 4035942 4036069 -148501190 + RSINE1 SINE B4 22 165 0 5 615 231 298 21 0 chr5 4036174 4036268 -148500991 + CT-rich Low_complexity Low_complexity 1 96 0 5 615 1182 147 0 2 chr5 4036772 4037296 -148499963 + (CTCA)n Simple_repeat Simple_repeat 1 523 0 5 615 620 225 238 0 chr5 4037319 4037479 -148499780 - B3 SINE B2 -15 201 4 5 615 387 0 0 0 chr5 4038067 4038110 -148499149 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 5 615 424 107 0 26 chr5 4038116 4038193 -148499066 + Lx4A LINE L1 6980 7054 -4 5 615 23 54 0 0 chr5 4038194 4038231 -148499028 + AT_rich Low_complexity Low_complexity 1 37 0 5 615 235 288 0 57 chr5 4038379 4038449 -148498810 - ID4 SINE ID -17 66 1 6 615 326 233 55 0 chr5 4039738 4039811 -148497448 + ID4 SINE ID 1 77 -6 6 615 294 283 71 25 chr5 4039878 4039990 -148497269 + PB1 SINE Alu 1 125 -2 6 615 186 43 0 0 chr5 4040086 4040109 -148497150 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 615 655 284 22 43 chr5 4040507 4040691 -148496568 - B3A SINE B2 -18 180 1 6 615 668 298 67 9 chr5 4040691 4040896 -148496363 - B4 SINE B4 -53 239 26 6 615 959 194 57 10 chr5 4041196 4041389 -148495870 - B3 SINE B2 -6 210 9 6 615 338 354 0 10 chr5 4041525 4041625 -148495634 - B4A SINE B4 0 292 194 6 615 393 261 118 0 chr5 4041645 4041764 -148495495 - B4A SINE B4 -152 140 8 6 615 294 29 0 0 chr5 4042473 4042508 -148494751 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 6 615 1037 165 36 26 chr5 4042543 4042736 -148494523 + B2_Mm2 SINE B2 1 195 0 6 615 276 30 0 0 chr5 4042897 4042930 -148494329 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 615 888 255 98 12 chr5 4042977 4043231 -148494028 - B4 SINE B4 -16 276 1 7 615 25 0 0 0 chr5 4043535 4043560 -148493699 + AT_rich Low_complexity Low_complexity 1 25 0 7 615 478 205 218 16 chr5 4043576 4043700 -148493559 + B1_Mur2 SINE Alu 1 149 0 7 615 490 311 47 80 chr5 4044262 4044601 -148492658 - RLTR11B LTR ERVK -125 328 1 7 615 544 302 43 12 chr5 4045311 4045472 -148491787 - B4A SINE B4 -119 173 8 7 615 315 332 128 50 chr5 4047088 4047408 -148489851 - MER57D LTR ERV1 -40 371 27 7 615 8129 72 10 15 chr5 4048027 4049436 -148487823 - L1_Mus3 LINE L1 0 6638 5223 7 615 2197 128 121 34 chr5 4051326 4051763 -148485496 + IAPLTR2_Mm LTR ERVK 1 475 0 7 615 638 229 73 99 chr5 4051975 4052208 -148485051 + RLTR40 LTR ERVK 69 295 -522 7 615 227 129 0 0 chr5 4054722 4054753 -148482506 + RLTR40 LTR ERVK 698 728 -89 8 615 231 296 29 67 chr5 4056285 4056390 -148480869 - ORR1E LTR MaLR -170 189 89 8 615 380 197 0 0 chr5 4056586 4056652 -148480607 + B1_Mus1 SINE Alu 13 78 -70 8 615 235 32 0 0 chr5 4056654 4056685 -148480574 - RMER15 LTR ERVL 0 575 545 8 615 239 271 210 24 chr5 4056709 4057000 -148480259 + L1MC4 LINE L1 7008 7352 -690 8 615 254 198 226 0 chr5 4057870 4057976 -148479283 + L1MC4 LINE L1 7678 7807 -235 8 615 551 245 39 26 chr5 4057983 4058138 -148479121 + RSINE1 SINE B4 3 159 -6 8 615 277 275 77 0 chr5 4059180 4059271 -148477988 - L1M5 LINE L1 -568 5672 5575 8 615 473 277 29 7 chr5 4059271 4059409 -148477850 - ID_B1 SINE B4 0 224 84 8 615 232 291 12 25 chr5 4061882 4061963 -148475296 - ID4_ SINE ID -2 81 2 8 615 353 250 24 24 chr5 4061995 4062077 -148475182 - PB1 SINE Alu -44 83 2 8 615 343 221 0 49 chr5 4062005 4062086 -148475173 - ID_B1 SINE B4 -71 153 77 9 615 875 231 29 5 chr5 4062114 4062323 -148474936 - B3 SINE B2 0 216 3 9 76 4189 215 54 14 chr5 4062615 4063492 -148473767 - Lx5 LINE L1 -75 6975 6064 9 616 22 0 0 0 chr5 4063750 4063772 -148473487 + AT_rich Low_complexity Low_complexity 1 22 0 9 616 511 188 0 20 chr5 4065466 4065564 -148471695 - B1_Mur1 SINE Alu 0 149 54 9 616 796 201 0 0 chr5 4066261 4066410 -148470849 - B1_Mur3 SINE Alu 0 149 1 9 616 379 133 63 88 chr5 4066655 4067023 -148470236 + (CTGTG)n Simple_repeat Simple_repeat 1 358 0 9 616 243 61 0 0 chr5 4067678 4067711 -148469548 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 9 616 1445 70 21 0 chr5 4068243 4068429 -148468830 - B2_Mm1a SINE B2 0 193 4 9 616 415 315 9 9 chr5 4068492 4068604 -148468655 + B1_Mur1 SINE Alu 3 114 -35 9 616 248 259 63 51 chr5 4069577 4069752 -148467507 + (CAGA)n Simple_repeat Simple_repeat 2 178 0 1 616 1296 94 28 0 chr5 4069846 4070027 -148467232 - B2_Mm2 SINE B2 -7 188 3 1 616 588 256 142 0 chr5 4071169 4071345 -148465914 - B3 SINE B2 0 216 16 1 616 528 16 0 0 chr5 4071346 4071407 -148465852 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 616 585 208 69 0 chr5 4071930 4072060 -148465199 - B1_Mur2 SINE Alu -10 139 1 1 616 575 146 107 0 chr5 4073376 4073479 -148463780 - MurERV4-int LTR ERVK -1364 3896 3783 1 616 14459 156 37 7 chr5 4073688 4076483 -148460776 - MurERV4-int LTR ERVK -83 5177 1833 1 616 254 301 117 29 chr5 4078434 4078571 -148458688 + RSINE1 SINE B4 11 159 -6 1 616 687 171 224 23 chr5 4078802 4078976 -148458283 - B3 SINE B2 -7 209 1 1 616 355 311 46 35 chr5 4079170 4079336 -148457923 + B3A SINE B2 2 170 -28 1 616 180 0 0 0 chr5 4079336 4079356 -148457903 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 616 401 241 147 14 chr5 4079418 4079561 -148457698 - RSINE1 SINE B4 -2 163 2 1 616 1842 162 82 18 chr5 4081718 4082108 -148455151 - MTC LTR MaLR -6 415 1 1 616 334 242 88 0 chr5 4082151 4082242 -148455017 - PB1D7 SINE Alu -20 100 2 1 616 793 199 0 20 chr5 4084113 4084262 -148452997 + B1_Mur1 SINE Alu 3 148 -1 1 616 191 204 0 18 chr5 4084265 4084320 -148452939 + GA-rich Low_complexity Low_complexity 1 54 0 1 616 7606 72 39 6 chr5 4084320 4085330 -148451929 + L1_Mus4 LINE L1 5594 6636 0 1 616 184 250 0 0 chr5 4085875 4085919 -148451340 + L3 LINE CR1 4296 4339 -150 1 616 717 99 16 8 chr5 4086248 4086370 -148450889 + (TC)n Simple_repeat Simple_repeat 2 124 0 1 616 22 56 0 0 chr5 4086824 4086860 -148450399 + AT_rich Low_complexity Low_complexity 1 36 0 1 616 1577 106 286 3 chr5 4087110 4087414 -148449845 - Lx4A LINE L1 0 7058 6669 1 616 1074 104 68 17 chr5 4087404 4087580 -148449679 + Lx4A LINE L1 6470 6654 -404 1 616 404 230 20 10 chr5 4088151 4088252 -148449007 + L1MB7 LINE L1 90 191 -6351 1 616 364 261 0 0 chr5 4088566 4088658 -148448601 + B1_Mur1 SINE Alu 53 144 -5 1 616 387 271 96 65 chr5 4088671 4088963 -148448296 + L1MB7 LINE L1 832 1132 -5410 1 616 396 201 170 63 chr5 4089351 4089574 -148447685 + L1MB7 LINE L1 1151 1397 -5145 1 616 834 258 137 34 chr5 4089581 4089595 -148447664 + L1MB7 LINE L1 4896 4907 -1737 1 616 492 256 42 71 chr5 4089595 4089763 -148447496 + RSINE1 SINE B4 3 165 0 1 616 834 258 137 34 chr5 4089763 4089819 -148447440 + L1MB7 LINE L1 4908 4964 -1680 1 616 219 36 0 0 chr5 4089819 4089847 -148447412 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 1 616 834 258 137 34 chr5 4089847 4090329 -148446930 + L1MB7 LINE L1 4965 5505 -1139 1 616 573 278 83 23 chr5 4090602 4090867 -148446392 + L1MB7 LINE L1 6076 6356 -326 1 616 346 281 41 73 chr5 4090913 4091036 -148446223 + B1_Mur2 SINE Alu 31 149 0 1 616 456 51 0 0 chr5 4091242 4091301 -148445958 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 616 180 0 0 0 chr5 4091346 4091366 -148445893 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 616 7404 101 21 21 chr5 4092690 4093849 -148443410 + Lx LINE L1 5493 6652 -2 1 616 1673 172 100 14 chr5 4094030 4094522 -148442737 - RMER4B LTR ERVK -5 580 17 1 616 4951 135 16 3 chr5 4094575 4095806 -148441453 + L1Md_A LINE L1 402 1650 -4233 1 616 17182 67 6 1 chr5 4095799 4097994 -148439265 + L1Md_A LINE L1 3383 5586 -297 1 616 7735 73 3 8 chr5 4097994 4098995 -148438264 + L1Md_F2 LINE L1 5587 6582 0 1 616 395 256 0 0 chr5 4099607 4099693 -148437566 - PB1D10 SINE Alu -18 99 14 1 616 347 279 0 12 chr5 4101729 4101809 -148435450 + RSINE1 SINE B4 1 79 -86 1 616 592 294 0 14 chr5 4101896 4102044 -148435215 + B3A SINE B2 38 183 -15 1 616 1053 258 75 26 chr5 4102106 4102412 -148434847 + Lx8 LINE L1 7149 7469 -4 1 616 310 253 73 10 chr5 4103200 4103296 -148433963 + ID_B1 SINE B4 116 217 -7 1 616 388 281 17 34 chr5 4106161 4106279 -148430980 - B1_Mur1 SINE Alu -32 117 2 1 616 361 240 99 0 chr5 4106302 4106423 -148430836 - Ricksha DNA MuDR -142 3104 2972 1 616 565 184 9 9 chr5 4106461 4106576 -148430683 + B1_Mur2 SINE Alu 26 140 -9 1 616 525 230 133 41 chr5 4106582 4106887 -148430372 - Ricksha DNA MuDR -323 2923 2553 1 616 2260 119 61 23 chr5 4106990 4107384 -148429875 - RLTR9E LTR ERVK 0 409 1 1 616 403 283 9 0 chr5 4107399 4107505 -148429754 + B1F SINE Alu 41 147 -2 1 616 692 247 96 87 chr5 4107505 4107838 -148429421 - Ricksha DNA MuDR -822 2424 2089 1 616 24 0 0 0 chr5 4107894 4107918 -148429341 + AT_rich Low_complexity Low_complexity 1 24 0 1 616 845 75 0 0 chr5 4107918 4108038 -148429221 + B1_Mm SINE Alu 28 147 0 1 616 479 309 172 17 chr5 4108563 4108853 -148428406 + Lx8 LINE L1 6895 7229 -244 1 616 200 34 0 33 chr5 4108917 4108947 -148428312 + (AGGGGG)n Simple_repeat Simple_repeat 6 34 0 1 616 4877 295 42 40 chr5 4108947 4112278 -148424981 - ETnERV-int LTR ERVK -3220 4186 118 1 616 258 184 0 0 chr5 4112616 4112665 -148424594 - RLTR24 LTR ERV1 0 529 481 1 616 360 0 0 0 chr5 4112681 4112721 -148424538 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 616 1350 149 116 4 chr5 4112741 4112983 -148424276 - RLTR24 LTR ERV1 -115 414 146 1 616 998 99 20 7 chr5 4113373 4113526 -148423733 - RLTR24 LTR ERV1 -374 155 1 1 616 212 158 0 0 chr5 4113722 4113760 -148423499 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 616 777 260 159 38 chr5 4115366 4115599 -148421660 + ORR1E LTR MaLR 1 274 -85 1 616 2897 135 123 51 chr5 4115599 4116128 -148421131 + RMER2 LTR ERV1 1 567 0 1 616 777 260 159 38 chr5 4116128 4116214 -148421045 + ORR1E LTR MaLR 275 359 0 1 616 493 311 141 8 chr5 4116215 4116557 -148420702 + L1MB5 LINE L1 5476 5867 -307 1 616 315 303 65 114 chr5 4116559 4116805 -148420454 - ORR1E LTR MaLR -13 346 113 1 616 418 280 108 59 chr5 4116992 4117178 -148420081 + B3 SINE B2 1 195 -21 1 616 2587 158 24 22 chr5 4117179 4117685 -148419574 + RMER3D-int LTR ERVK 1027 1533 -1309 1 616 1140 159 28 33 chr5 4117717 4117932 -148419327 + RMER3D-int LTR ERVK 1532 1745 -1097 1 616 2426 166 97 2 chr5 4117932 4118366 -148418893 + RLTR17 LTR ERVK 218 692 0 1 616 221 196 43 0 chr5 4118370 4118416 -148418843 + RSINE1 SINE B4 82 129 -36 1 616 396 0 0 0 chr5 4118432 4118476 -148418783 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 616 741 251 42 37 chr5 4119882 4119906 -148417353 - B3 SINE B2 0 216 192 1 616 786 229 7 7 chr5 4119906 4120047 -148417212 + B1_Mur2 SINE Alu 2 142 -7 1 616 915 228 25 3 chr5 4120047 4120237 -148417022 - B3A SINE B2 -25 191 1 1 616 1128 278 168 11 chr5 4121805 4122282 -148414977 - L1MC2 LINE L1 -193 6151 5600 1 616 2689 156 16 5 chr5 4122438 4122882 -148414377 + Lx LINE L1 6203 6651 -3 1 616 504 0 0 0 chr5 4123191 4123247 -148414012 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 616 3430 282 88 24 chr5 4123677 4124900 -148412359 - Lx9 LINE L1 -2 7642 6341 1 616 531 0 0 0 chr5 4124900 4124959 -148412300 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 1 616 3032 136 123 8 chr5 4125681 4126184 -148411075 - RLTR31_Mm LTR ERVK 0 561 1 1 616 3092 35 9 0 chr5 4126607 4126950 -148410309 - ORR1A1 LTR MaLR 0 346 1 1 616 282 204 32 21 chr5 4127023 4127118 -148410141 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 616 630 184 42 49 chr5 4127356 4127499 -148409760 - B1_Mur2 SINE Alu 0 149 8 1 616 4138 117 44 12 chr5 4127499 4128180 -148409079 - RMER6A LTR ERVK 0 756 54 1 616 36206 63 2 2 chr5 4128189 4133718 -148403541 - L1Md_F2 LINE L1 0 6582 1108 1 616 3096 9 0 3 chr5 4133718 4134045 -148403214 - IAPLTR3 LTR ERVK 0 326 1 1 616 6323 82 3 9 chr5 4134045 4134789 -148402470 - L1Md_F2 LINE L1 -5495 1121 375 1 616 414 138 0 0 chr5 4134789 4134854 -148402405 - RMER6A LTR ERVK -396 65 1 1 616 240 241 0 17 chr5 4135221 4135280 -148401979 + CT-rich Low_complexity Low_complexity 4 61 0 1 616 1016 246 5 10 chr5 4135382 4135591 -148401668 + B3 SINE B2 1 208 -8 1 616 275 77 51 0 chr5 4135850 4135889 -148401370 + B1_Mus1 SINE Alu 7 47 -101 1 616 21761 108 5 120 chr5 4135890 4137321 -148399938 + L1_Mus2 LINE L1 2094 3122 -2761 1 616 1121 57 35 7 chr5 4137321 4137462 -148399797 - B1_Mm SINE Alu -1 146 2 1 616 21761 99 10 88 chr5 4137462 4140976 -148396283 + L1_Mus2 LINE L1 3123 6565 -1 1 616 1146 89 6 40 chr5 4141746 4141921 -148395338 - L1_Mus2 LINE L1 0 6566 6398 1 616 400 330 42 0 chr5 4142158 4142276 -148394983 - B4 SINE B4 -169 123 1 1 616 388 344 118 30 chr5 4142334 4142900 -148394359 - L2b LINE L2 -5 3370 2752 1 616 307 274 104 8 chr5 4143060 4143185 -148394074 - L2b LINE L2 -768 2651 2515 1 616 8870 176 40 18 chr5 4143272 4146043 -148391216 - Lx5 LINE L1 -5 7045 4205 1 616 1217 140 124 62 chr5 4146042 4146301 -148390958 - Lx5 LINE L1 -2245 3632 3358 1 616 4686 154 21 47 chr5 4146302 4146394 -148390865 + L1Md_F2 LINE L1 422 523 -6201 1 616 7004 40 0 0 chr5 4146394 4147179 -148390080 + L1Md_T LINE L1 5798 6582 0 1 616 32810 72 4 57 chr5 4147179 4152542 -148384717 + L1Md_F2 LINE L1 524 5586 -297 1 616 8142 65 0 10 chr5 4152542 4153536 -148383723 + L1Md_F2 LINE L1 5587 6570 -12 1 616 1348 249 22 15 chr5 4153536 4153582 -148383677 + L1M1 LINE L1 5616 5666 -634 1 616 225 304 63 111 chr5 4153582 4153666 -148383593 - MLT1D LTR MaLR -364 141 62 1 616 690 94 0 0 chr5 4153666 4153783 -148383476 + (CAATA)n Simple_repeat Simple_repeat 4 120 0 1 616 225 304 63 111 chr5 4153783 4153824 -148383435 - MLT1D LTR MaLR -444 61 22 1 616 537 255 21 0 chr5 4153862 4154003 -148383256 + L1MB3 LINE L1 5750 5893 -290 1 616 350 179 0 13 chr5 4155836 4155890 -148381369 + polypyrimidine Low_complexity Low_complexity 28 80 0 1 616 1260 84 0 0 chr5 4155890 4156069 -148381190 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 616 350 179 0 13 chr5 4156069 4156093 -148381166 + polypyrimidine Low_complexity Low_complexity 4 27 0 1 616 260 88 0 0 chr5 4156094 4156128 -148381131 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 1 616 360 273 80 12 chr5 4157434 4157597 -148379662 - L1M1 LINE L1 -708 5595 5422 1 616 946 203 45 128 chr5 4157632 4157920 -148379339 - B4 SINE B4 0 292 29 1 616 304 264 126 0 chr5 4157925 4158113 -148379146 - L1_Mur3 LINE L1 -1003 5441 5185 1 616 271 303 11 43 chr5 4158156 4158249 -148379010 - RSINE1 SINE B4 -17 148 59 1 616 704 319 35 17 chr5 4158497 4158784 -148378475 - B4A SINE B4 0 292 1 1 616 414 304 0 35 chr5 4158978 4159094 -148378165 - PB1D10 SINE Alu -5 112 1 1 616 234 279 11 95 chr5 4159010 4159105 -148378154 - MT2B LTR ERVL -360 241 155 1 616 248 287 61 41 chr5 4161755 4161853 -148375406 + MamRep605 Unknown Unknown 525 624 -252 1 616 991 284 69 8 chr5 4162201 4162563 -148374696 + MLT1B LTR MaLR 5 388 -2 2 616 485 290 17 56 chr5 4163239 4163418 -148373841 + L1MC3 LINE L1 7324 7495 -290 2 616 467 185 45 18 chr5 4163913 4164023 -148373236 - ORR1D2 LTR MaLR -1 369 257 2 616 14131 97 8 10 chr5 4164026 4166871 -148370388 + L1Md_A LINE L1 188 3025 -2858 2 616 4834 45 14 0 chr5 4166871 4167429 -148369830 + L1Md_F3 LINE L1 6005 6570 -14 2 616 1134 250 25 11 chr5 4167432 4167711 -148369548 - ORR1D2 LTR MaLR -87 283 1 2 616 381 299 13 0 chr5 4167711 4167876 -148369383 + L1MC3 LINE L1 7617 7769 -16 2 616 414 0 0 0 chr5 4168628 4168674 -148368585 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 616 228 35 0 0 chr5 4169077 4169106 -148368153 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 2 616 407 241 6 0 chr5 4169183 4169345 -148367914 + (TG)n Simple_repeat Simple_repeat 2 164 0 2 616 279 79 0 0 chr5 4169422 4169460 -148367799 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 616 23 33 0 0 chr5 4169509 4169539 -148367720 + AT_rich Low_complexity Low_complexity 1 30 0 2 616 340 338 5 50 chr5 4169601 4169819 -148367440 - MIR SINE MIR -4 258 51 2 616 1056 22 47 21 chr5 4169929 4170169 -148367090 + (TG)n Simple_repeat Simple_repeat 1 246 0 2 616 330 228 39 107 chr5 4170217 4170346 -148366913 - B1F1 SINE Alu -33 116 3 2 616 5040 141 29 22 chr5 4170566 4171300 -148365959 - Lx2B LINE L1 -3 6997 6270 2 616 432 0 0 0 chr5 4171300 4171348 -148365911 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 616 5040 141 29 22 chr5 4171348 4171512 -148365747 - Lx2B LINE L1 -731 6269 6095 2 616 273 272 24 24 chr5 4171541 4171624 -148365635 + ID4_ SINE ID 1 83 0 2 616 253 328 52 37 chr5 4171632 4171768 -148365491 - MER5A DNA MER1_type -29 160 23 2 616 699 366 50 101 chr5 4171895 4172390 -148364869 + MER45C DNA Tip100 1 470 -483 2 616 8620 5 0 0 chr5 4172732 4173672 -148363587 - L1Md_A LINE L1 0 6582 5643 2 616 6810 45 8 0 chr5 4173672 4174494 -148362765 + L1Md_A LINE L1 4758 5586 -297 2 616 7990 42 18 0 chr5 4174494 4175461 -148361798 + L1Md_F3 LINE L1 5587 6570 -14 2 616 283 364 25 0 chr5 4175572 4175690 -148361569 - MER5A1 DNA MER1_type -12 154 34 2 616 707 290 14 31 chr5 4175808 4176156 -148361103 + Lx8 LINE L1 6688 7111 -362 2 616 481 314 67 18 chr5 4176671 4176895 -148360364 + MIR SINE MIR 7 241 -21 2 616 2331 119 6 0 chr5 4178554 4178915 -148358344 + Lx2 LINE L1 6598 6960 -37 2 616 293 312 113 26 chr5 4179292 4179486 -148357773 - ORR1D1 LTR MaLR -79 295 85 2 616 5027 121 6 5 chr5 4180183 4180964 -148356295 - Lx2 LINE L1 -1 6996 6215 2 616 433 305 65 13 chr5 4182292 4182445 -148354814 + RSINE1 SINE B4 3 163 -2 2 616 284 320 57 34 chr5 4183619 4183794 -148353465 - L2a LINE L2 -19 3407 3229 2 616 342 0 0 0 chr5 4187753 4187791 -148349468 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 616 3499 118 105 13 chr5 4188661 4189118 -148348141 - RLTR33 LTR ERVK -12 666 167 2 616 1388 155 36 72 chr5 4189118 4189452 -148347807 - RLTRETN_Mm LTR ERVK 0 322 1 2 616 3499 118 105 13 chr5 4189452 4189604 -148347655 - RLTR33 LTR ERVK -512 166 1 2 616 702 228 31 6 chr5 4189792 4189951 -148347308 + MTC LTR MaLR 48 210 -211 2 616 1198 54 0 0 chr5 4189951 4190098 -148347161 + B1_Mus2 SINE Alu 1 147 0 2 616 282 116 0 0 chr5 4190098 4190141 -148347118 + (A)n Simple_repeat Simple_repeat 1 43 0 2 616 1477 142 4 0 chr5 4190141 4190366 -148346893 + MTC LTR MaLR 196 421 0 2 616 3242 172 59 12 chr5 4190357 4191049 -148346210 - RMER6A LTR ERVK 0 756 1 2 616 234 0 0 0 chr5 4191553 4191579 -148345680 + (CAA)n Simple_repeat Simple_repeat 1 26 0 2 616 21 71 0 0 chr5 4194168 4194210 -148343049 + AT_rich Low_complexity Low_complexity 1 42 0 2 617 1036 115 0 22 chr5 4194424 4194602 -148342657 + (TTTC)n Simple_repeat Simple_repeat 2 175 0 2 617 227 250 45 11 chr5 4194610 4194699 -148342560 - RMER1C Other Other 0 1342 1251 2 617 482 267 119 37 chr5 4194629 4194747 -148342512 - Lx8 LINE L1 -1 7472 7341 2 617 1953 39 0 0 chr5 4194747 4194978 -148342281 - L1Md_T LINE L1 0 6582 6352 2 617 482 267 119 37 chr5 4194978 4195077 -148342182 - Lx8 LINE L1 -133 7340 7237 2 617 1390 167 96 100 chr5 4195080 4195519 -148341740 - RMER10A LTR ERVL -5 437 1 2 617 241 300 0 41 chr5 4195553 4195626 -148341633 - ID4_ SINE ID -4 79 10 2 617 375 23 0 0 chr5 4195756 4195800 -148341459 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 617 49 43 0 0 chr5 4197592 4197662 -148339597 + AT_rich Low_complexity Low_complexity 1 70 0 2 617 487 258 51 19 chr5 4197680 4197838 -148339421 - RSINE1 SINE B4 0 165 3 2 617 354 299 108 108 chr5 4198564 4198824 -148338435 + MLT1D LTR MaLR 108 397 -227 2 617 1163 69 0 0 chr5 4199209 4199354 -148337905 + B1_Mus1 SINE Alu 2 146 -2 2 617 2116 233 131 11 chr5 4199361 4199934 -148337325 - RCHARR1 DNA MER1_type -28 946 300 2 617 2814 47 16 53 chr5 4199934 4200313 -148336946 - RLTR10B2 LTR ERVK 0 365 1 2 617 2116 233 131 11 chr5 4200313 4200490 -148336769 - RCHARR1 DNA MER1_type -675 299 107 2 617 775 154 28 13 chr5 4201460 4201646 -148335613 - B2_Mm2 SINE B2 -9 184 1 2 617 891 250 199 13 chr5 4201769 4202162 -148335097 + Lx9 LINE L1 7179 7644 0 2 617 22 0 0 0 chr5 4202357 4202379 -148334880 + AT_rich Low_complexity Low_complexity 1 22 0 2 617 2180 98 13 7 chr5 4202389 4202696 -148334563 + RLTR27 LTR ERVK 1 309 0 2 617 380 66 6 0 chr5 4202711 4202764 -148334495 + MMERVK10C-int LTR ERVK 163 267 -7314 2 617 682 225 55 70 chr5 4202796 4202997 -148334262 + MMERVK10C-int LTR ERVK 655 852 -1135 2 617 203 279 0 62 chr5 4202998 4203063 -148334196 + polypurine Low_complexity Low_complexity 5 65 0 2 617 281 167 16 16 chr5 4203145 4203206 -148334053 + MMERVK10C-int LTR ERVK 855 915 -6765 2 617 7996 300 40 45 chr5 4203377 4207711 -148329548 + MMERVK10C-int LTR ERVK 1166 5477 -2104 2 617 1423 244 40 29 chr5 4207940 4208494 -148328765 + MMERVK10C-int LTR ERVK 6917 7581 0 2 617 2126 93 30 3 chr5 4208494 4208795 -148328464 + RLTR27 LTR ERVK 1 309 0 2 617 532 243 129 0 chr5 4209582 4209722 -148327537 - Tigger5 DNA MER2_type -2232 174 17 2 617 236 53 26 0 chr5 4209951 4209989 -148327270 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 617 300 264 8 31 chr5 4210544 4210680 -148326579 - L1_Rod LINE L1 -336 5853 5657 2 617 544 278 47 26 chr5 4210681 4210914 -148326345 + L1M3 LINE L1 5511 5748 -441 2 617 238 213 115 0 chr5 4211316 4211377 -148325882 - B4A SINE B4 -216 76 9 2 617 926 293 94 38 chr5 4211426 4211852 -148325407 - LTR40b LTR ERVL 0 462 13 2 617 406 274 82 0 chr5 4212353 4212488 -148324771 - L1MA4A LINE L1 -441 5862 5717 2 617 233 174 22 0 chr5 4212566 4212612 -148324647 - L1M1 LINE L1 -536 5767 5721 2 617 233 174 22 0 chr5 4212666 4212712 -148324547 - L1M1 LINE L1 -536 5767 5721 2 617 229 200 20 0 chr5 4212762 4212812 -148324447 - L1M1 LINE L1 -536 5767 5717 2 617 226 200 20 0 chr5 4213054 4213104 -148324155 - L1M1 LINE L1 -536 5767 5717 2 617 636 269 84 65 chr5 4213154 4213476 -148323783 - L1M2 LINE L1 -530 5767 5440 2 617 207 0 0 0 chr5 4213484 4213507 -148323752 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 617 675 288 4 86 chr5 4213507 4213739 -148323520 - ID_B1 SINE B4 -10 214 2 2 617 383 253 58 8 chr5 4213750 4213976 -148323283 - L1MA4A LINE L1 -866 5431 5156 2 617 273 156 67 25 chr5 4214265 4214337 -148322922 - L1MA4A LINE L1 -925 5215 5144 2 617 22 0 0 0 chr5 4214671 4214693 -148322566 + AT_rich Low_complexity Low_complexity 1 22 0 2 617 2096 206 69 2 chr5 4214713 4215150 -148322109 - RMER1B Other Other -12 1054 589 2 617 2081 136 63 3 chr5 4215169 4215531 -148321728 + ORR1C2 LTR MaLR 1 384 0 2 617 382 246 7 29 chr5 4215531 4215669 -148321590 + L1M2 LINE L1 3557 3691 -2452 2 617 464 308 40 14 chr5 4215713 4215861 -148321398 + B3 SINE B2 13 164 -52 2 617 306 0 0 0 chr5 4215861 4215895 -148321364 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 617 927 203 34 0 chr5 4215909 4216086 -148321173 - Lx7 LINE L1 -516 7180 6998 2 617 706 232 49 164 chr5 4216143 4216467 -148320792 - B4 SINE B4 -3 289 3 2 617 8370 155 19 16 chr5 4216823 4218978 -148318281 - Lx4B LINE L1 -8 7050 4925 2 617 207 162 0 0 chr5 4219636 4219673 -148317586 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 617 319 329 21 14 chr5 4220769 4220914 -148316345 + Tigger16a DNA Tigger 773 918 -15 2 617 296 267 45 45 chr5 4223239 4223349 -148313910 + PB1D10 SINE Alu 8 117 0 2 617 401 225 0 0 chr5 4223414 4223485 -148313774 - PB1D10 SINE Alu -11 106 36 2 617 279 0 0 0 chr5 4223487 4223518 -148313741 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 617 518 265 50 52 chr5 4223596 4223811 -148313448 + B4A SINE B4 62 286 -6 2 617 432 0 0 0 chr5 4223849 4223897 -148313362 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 617 431 342 27 19 chr5 4223917 4224176 -148313083 + L1ME1 LINE L1 5842 6102 -77 2 617 183 205 0 0 chr5 4224767 4224806 -148312453 + CT-rich Low_complexity Low_complexity 2 40 0 2 617 1151 71 0 0 chr5 4224871 4225011 -148312248 + B1_Mus2 SINE Alu 1 140 -7 2 617 414 0 0 0 chr5 4225015 4225061 -148312198 + (TAA)n Simple_repeat Simple_repeat 2 47 0 2 617 192 294 239 0 chr5 4225292 4225401 -148311858 - L2 LINE L2 -1241 2178 2044 2 617 857 375 60 44 chr5 4226221 4226703 -148310556 + LTR41B LTR ERVL 7 496 -262 2 617 504 334 148 52 chr5 4226681 4227047 -148310212 + LTR41B LTR ERVL 354 754 -4 2 617 1146 122 0 0 chr5 4227065 4227245 -148310014 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 617 1104 133 0 0 chr5 4227273 4227453 -148309806 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 617 21 36 0 0 chr5 4227581 4227609 -148309650 + AT_rich Low_complexity Low_complexity 1 28 0 2 617 259 298 57 45 chr5 4227639 4227794 -148309465 + MIRc SINE MIR 48 207 -55 2 617 244 326 30 10 chr5 4230379 4230478 -148306781 + MER5A DNA MER1_type 63 163 -26 2 617 230 81 27 0 chr5 4231008 4231045 -148306214 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 617 1140 171 36 36 chr5 4231232 4231381 -148305878 - URR1B DNA MER1_type 0 225 77 2 617 3524 124 42 77 chr5 4231381 4232003 -148305256 + MT2B LTR ERVL 2 601 0 2 617 1140 171 36 36 chr5 4232003 4232078 -148305181 - URR1B DNA MER1_type -149 76 1 2 617 873 169 0 0 chr5 4232103 4232346 -148304913 + GA-rich Low_complexity Low_complexity 1 243 0 2 617 287 25 25 0 chr5 4232693 4232733 -148304526 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 3 617 369 0 0 0 chr5 4232861 4232902 -148304357 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 617 216 222 70 16 chr5 4232909 4233037 -148304222 + (CATATA)n Simple_repeat Simple_repeat 6 140 0 3 617 369 0 0 0 chr5 4233040 4233081 -148304178 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 617 1241 181 88 140 chr5 4233640 4233837 -148303422 - ORR1C1 LTR MaLR 0 378 192 3 617 2559 81 0 17 chr5 4233837 4234188 -148303071 + L1_Mus2 LINE L1 6222 6566 0 3 617 1241 181 88 140 chr5 4234188 4234389 -148302870 - ORR1C1 LTR MaLR -187 191 1 3 617 22 0 0 0 chr5 4234415 4234437 -148302822 + AT_rich Low_complexity Low_complexity 1 22 0 3 617 318 106 0 0 chr5 4235659 4235706 -148301553 + (T)n Simple_repeat Simple_repeat 1 47 0 3 617 249 180 0 0 chr5 4235835 4235885 -148301374 + (TATG)n Simple_repeat Simple_repeat 1 50 0 3 617 809 283 24 17 chr5 4235914 4236202 -148301057 - B4A SINE B4 -2 290 1 3 617 476 32 16 0 chr5 4236396 4236458 -148300801 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 3 617 407 169 0 10 chr5 4236828 4236924 -148300335 + (TCCA)n Simple_repeat Simple_repeat 2 96 0 3 617 679 350 109 41 chr5 4236951 4237419 -148299840 - L2a LINE L2 0 3426 2927 3 617 302 354 231 7 chr5 4237516 4237932 -148299327 - L2a LINE L2 -1924 1495 987 3 617 28 0 0 0 chr5 4238090 4238118 -148299141 + AT_rich Low_complexity Low_complexity 1 28 0 3 617 28 48 0 0 chr5 4238605 4238647 -148298612 + AT_rich Low_complexity Low_complexity 1 42 0 3 617 3398 35 0 2 chr5 4240589 4240986 -148296273 + MTA_Mm LTR MaLR 1 396 0 3 617 316 304 71 0 chr5 4241457 4241557 -148295702 - MIR SINE MIR -108 154 49 3 617 928 247 0 0 chr5 4241932 4242110 -148295149 + B3A SINE B2 5 182 -16 3 617 221 30 61 0 chr5 4242153 4242186 -148295073 + (CAGAGA)n Simple_repeat Simple_repeat 6 40 0 3 617 567 112 0 0 chr5 4242189 4242278 -148294981 + (TAGA)n Simple_repeat Simple_repeat 2 90 0 3 617 668 221 83 0 chr5 4242278 4242423 -148294836 - ORR1D1 LTR MaLR -217 157 1 3 617 536 343 56 73 chr5 4243147 4243505 -148293754 - ORR1E LTR MaLR -7 352 1 3 617 350 316 84 87 chr5 4243507 4243829 -148293430 - MTEa LTR MaLR -11 368 48 3 617 180 267 0 0 chr5 4243862 4243907 -148293352 - MIR SINE MIR -55 153 109 3 617 849 361 74 21 chr5 4245916 4246445 -148290814 + LTR78 LTR ERV1 4 560 -744 3 617 535 298 30 43 chr5 4246691 4246993 -148290266 - L1MA9 LINE L1 -232 6080 5783 3 617 351 0 0 0 chr5 4246999 4247038 -148290221 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 617 563 243 62 23 chr5 4247179 4247356 -148289903 - Lx9 LINE L1 -856 6788 6605 3 617 450 340 53 5 chr5 4247432 4247621 -148289638 - Lx9 LINE L1 -1027 6617 6420 3 617 292 337 78 22 chr5 4248237 4248405 -148288854 + L2a LINE L2 3215 3415 -11 3 617 803 257 80 36 chr5 4248428 4248703 -148288556 - B4A SINE B4 -2 290 4 3 617 282 256 21 53 chr5 4248777 4248872 -148288387 + MER103 DNA DNA 2 93 -73 3 617 191 333 0 0 chr5 4249024 4249084 -148288175 - MIRb SINE MIR -121 147 88 3 617 2830 151 2 0 chr5 4249950 4250447 -148286812 - L1_Mur2 LINE L1 -1479 4398 3901 3 617 8438 129 24 3 chr5 4250442 4252658 -148284601 + Lx LINE L1 4388 6652 -2 3 617 2922 208 40 10 chr5 4254510 4255132 -148282127 - Lx9 LINE L1 -697 6947 6307 3 617 5477 172 68 12 chr5 4255167 4256312 -148280947 - Lx5 LINE L1 -3 7047 5839 3 617 24 67 0 0 chr5 4256509 4256554 -148280705 + AT_rich Low_complexity Low_complexity 1 45 0 3 617 203 343 96 36 chr5 4258392 4258559 -148278700 - MIRc SINE MIR -89 179 2 3 617 33 0 0 0 chr5 4258608 4258641 -148278618 + AT_rich Low_complexity Low_complexity 1 33 0 3 617 1716 169 46 89 chr5 4258678 4259048 -148278211 - ORR1B1 LTR MaLR 0 394 41 3 617 657 316 52 4 chr5 4259443 4259694 -148277565 - Lx8 LINE L1 -163 7310 7048 3 617 206 118 0 0 chr5 4260676 4260710 -148276549 + (A)n Simple_repeat Simple_repeat 1 34 0 3 617 740 108 70 98 chr5 4261206 4261349 -148275910 + B1_Mur3 SINE Alu 1 139 -10 3 617 261 0 0 0 chr5 4261349 4261378 -148275881 + (CAACC)n Simple_repeat Simple_repeat 2 30 0 3 617 277 220 59 20 chr5 4261861 4261963 -148275296 - L1MD3 LINE L1 -1 7994 7889 3 617 797 181 14 0 chr5 4262426 4262570 -148274689 + B1_Mus2 SINE Alu 1 146 -1 3 617 526 226 56 135 chr5 4262794 4263009 -148274250 - B3A SINE B2 0 198 1 3 617 338 314 140 6 chr5 4265670 4265827 -148271432 + L1ME3A LINE L1 5747 5924 -249 3 617 231 271 0 0 chr5 4265843 4265913 -148271346 + L1ME3A LINE L1 6055 6124 -49 3 617 915 158 111 24 chr5 4267317 4267525 -148269734 + URR1A DNA MER1_type 1 226 0 3 617 189 107 0 0 chr5 4268508 4268536 -148268723 + (A)n Simple_repeat Simple_repeat 1 28 0 3 617 428 106 61 0 chr5 4268706 4268772 -148268487 + U4 snRNA snRNA 1 70 -75 3 617 53 17 0 0 chr5 4268854 4268914 -148268345 + AT_rich Low_complexity Low_complexity 1 60 0 3 617 1200 187 140 0 chr5 4268942 4269199 -148268060 - MTC LTR MaLR -128 293 1 3 617 22 0 0 0 chr5 4271000 4271022 -148266237 + AT_rich Low_complexity Low_complexity 1 22 0 3 617 534 238 4 28 chr5 4271086 4271226 -148266033 - B3A SINE B2 -10 206 69 3 617 678 192 0 0 chr5 4272353 4272509 -148264750 + (TG)n Simple_repeat Simple_repeat 1 156 0 3 617 204 255 0 0 chr5 4272521 4272623 -148264636 + (TG)n Simple_repeat Simple_repeat 1 102 0 3 617 210 75 0 70 chr5 4272659 4272716 -148264543 + (CAAAAA)n Simple_repeat Simple_repeat 4 56 0 3 617 190 75 24 48 chr5 4272757 4272799 -148264460 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 3 617 993 54 0 154 chr5 4273643 4273818 -148263441 + B1_Mus1 SINE Alu 1 148 0 3 617 2780 134 25 5 chr5 4275974 4276423 -148260836 - Lx4A LINE L1 -105 6953 6496 3 617 295 237 92 123 chr5 4276424 4276554 -148260705 + MT2B LTR ERVL 139 264 -337 3 617 810 113 57 0 chr5 4276459 4276583 -148260676 + B1_Mus2 SINE Alu 11 141 -6 3 617 342 0 0 0 chr5 4276585 4276623 -148260636 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 617 428 86 29 0 chr5 4276623 4276693 -148260566 - Lx4B LINE L1 -584 6474 6403 3 617 187 348 21 52 chr5 4277373 4277470 -148259789 + MIRm SINE MIR 173 266 -10 3 617 1012 257 9 23 chr5 4277485 4277704 -148259555 - B3 SINE B2 0 216 1 3 617 310 209 105 0 chr5 4278596 4278682 -148258577 + L1MEg LINE L1 1001 1095 -4989 3 617 652 279 131 5 chr5 4279041 4279232 -148258027 + B3 SINE B2 2 216 0 3 617 33 25 0 0 chr5 4279359 4279399 -148257860 + AT_rich Low_complexity Low_complexity 1 40 0 3 617 238 167 0 69 chr5 4279428 4279486 -148257773 - Lx7 LINE L1 -80 7616 7563 3 617 306 0 0 0 chr5 4279489 4279523 -148257736 + (TAA)n Simple_repeat Simple_repeat 3 36 0 3 617 6165 211 52 11 chr5 4279538 4279564 -148257695 - Lx7 LINE L1 -194 7502 7473 3 617 377 20 20 0 chr5 4279564 4279614 -148257645 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 617 6165 211 52 11 chr5 4279614 4279666 -148257593 - Lx7 LINE L1 -224 7472 7418 3 617 1081 112 17 11 chr5 4279666 4279847 -148257412 + Lx LINE L1 6467 6648 -6 3 617 6165 211 52 11 chr5 4279847 4279927 -148257332 - Lx7 LINE L1 -279 7417 7317 3 617 186 43 0 0 chr5 4279927 4279950 -148257309 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 617 6165 211 52 11 chr5 4279950 4281210 -148256049 - Lx7 LINE L1 -380 7316 6027 3 617 12743 159 30 50 chr5 4281214 4281798 -148255461 - L1_Mur3 LINE L1 -756 5124 4515 3 617 2988 76 44 2 chr5 4281798 4282209 -148255050 - L1_Mus3 LINE L1 0 6638 6211 3 617 12743 159 30 50 chr5 4282209 4284416 -148252843 - L1_Mur3 LINE L1 -1366 4514 2389 3 617 7366 63 9 8 chr5 4284417 4285212 -148252047 - L1_Mus1 LINE L1 0 6567 5771 3 617 2176 109 52 12 chr5 4285212 4285555 -148251704 - IAPEY2_LTR LTR ERVK 0 357 1 3 617 7366 111 0 8 chr5 4285555 4286565 -148250694 - L1_Mus1 LINE L1 -113 5770 4763 3 617 3608 197 67 59 chr5 4286557 4287233 -148250026 - L1_Mur3 LINE L1 -3473 2407 1695 3 617 1178 70 0 0 chr5 4287233 4287376 -148249883 - B1_Mus2 SINE Alu 0 147 5 3 617 3608 197 67 59 chr5 4287376 4287873 -148249386 - L1_Mur3 LINE L1 -4186 1694 1224 3 617 1177 278 83 59 chr5 4288374 4288783 -148248476 + MTD LTR MaLR 1 419 0 3 617 671 205 129 16 chr5 4290616 4290864 -148246395 - RMER17C LTR ERVK -134 276 1 3 617 486 0 0 0 chr5 4290866 4290920 -148246339 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 3 617 352 329 50 84 chr5 4291074 4291313 -148245946 - MLT1A LTR MaLR -78 296 66 3 617 2047 127 116 40 chr5 4291353 4291723 -148245536 - RMER10B LTR ERVL 0 398 1 3 617 683 338 121 33 chr5 4292510 4292997 -148244262 + L4 LINE RTE 1362 1891 -138 3 617 1426 70 16 0 chr5 4293200 4293386 -148243873 - B2_Mm2 SINE B2 -5 190 2 3 617 2338 106 6 0 chr5 4293595 4293917 -148243342 + ORR1A2 LTR MaLR 1 324 -3 3 617 376 301 113 12 chr5 4293945 4294113 -148243146 - L1ME3B LINE L1 -329 5911 5727 3 617 2588 116 34 73 chr5 4294763 4295201 -148242058 + RLTR23 LTR ERV1 2 422 -8 3 617 414 0 0 0 chr5 4295202 4295248 -148242011 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 617 28525 103 50 1 chr5 4295370 4299254 -148238005 + L1_Mus1 LINE L1 618 4736 -1147 3 617 183 42 0 0 chr5 4299254 4299278 -148237981 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3 617 28525 84 20 0 chr5 4299278 4301103 -148236156 + L1_Mus1 LINE L1 4737 6565 -2 3 617 25 0 0 0 chr5 4301179 4301204 -148236055 + AT_rich Low_complexity Low_complexity 1 25 0 3 617 327 267 69 5 chr5 4301340 4301432 -148235827 - MTE2a LTR MaLR -13 406 290 3 617 21 0 0 0 chr5 4301561 4301582 -148235677 + AT_rich Low_complexity Low_complexity 1 21 0 3 617 1992 146 46 28 chr5 4301806 4302195 -148235064 + RMER10B LTR ERVL 1 396 -2 3 617 2297 176 49 25 chr5 4302207 4302696 -148234563 + RLTR28 LTR ERVL 23 523 -1 3 617 200 207 17 33 chr5 4304386 4304446 -148232813 - MER5A DNA MER1_type -35 154 96 3 617 355 228 0 37 chr5 4304448 4304530 -148232729 + MER57E1 LTR ERV1 9 87 -285 3 617 1116 208 22 20 chr5 4304837 4305202 -148232057 + Lx9 LINE L1 5617 6018 -1626 3 617 3584 10 2 0 chr5 4305203 4305598 -148231661 - MTA_Mm LTR MaLR 0 396 1 4 617 2081 240 54 16 chr5 4305642 4306196 -148231063 + Lx9 LINE L1 6295 6869 -775 3 617 277 227 58 50 chr5 4306352 4306372 -148230887 + Lx9 LINE L1 7490 7507 -137 3 617 234 0 0 0 chr5 4306372 4306398 -148230861 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 617 277 227 58 50 chr5 4306398 4306516 -148230743 + Lx9 LINE L1 7508 7629 -15 3 617 1816 150 17 7 chr5 4307135 4307437 -148229822 + RLTR41 LTR ERV1 142 446 0 4 617 749 309 115 20 chr5 4307562 4307918 -148229341 + LTR88b LTR Gypsy? 35 424 -413 4 617 1165 258 61 33 chr5 4308236 4308565 -148228694 - MTEb LTR MaLR -37 342 5 4 617 2239 157 99 19 chr5 4308639 4309149 -148228110 + BGLII_B LTR ERVK 2 436 -5 4 617 874 104 131 38 chr5 4309155 4309293 -148227966 + B2_Mm2 SINE B2 3 161 -34 4 617 189 0 0 0 chr5 4309293 4309314 -148227945 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 4 617 874 104 131 38 chr5 4309314 4309335 -148227924 + B2_Mm2 SINE B2 162 177 -18 4 617 4995 164 45 9 chr5 4309518 4310393 -148226866 + RMER13B LTR ERVK 3 908 0 4 617 21 0 0 0 chr5 4311586 4311607 -148225652 + AT_rich Low_complexity Low_complexity 1 21 0 4 617 221 227 22 33 chr5 4313370 4313398 -148223861 + A-rich Low_complexity Low_complexity 1 26 0 4 617 1191 48 7 0 chr5 4313398 4313544 -148223715 + B1_Mm SINE Alu 1 147 0 4 617 221 227 22 33 chr5 4313544 4313606 -148223653 + A-rich Low_complexity Low_complexity 27 90 0 4 617 314 271 277 8 chr5 4313663 4313793 -148223466 - MER58B DNA MER1_type 0 341 177 4 617 637 263 41 56 chr5 4313820 4314017 -148223242 + B3A SINE B2 2 195 -3 4 617 1140 50 7 0 chr5 4314028 4314168 -148223091 + B1_Mus1 SINE Alu 2 142 -6 4 617 992 105 0 7 chr5 4314170 4314323 -148222936 + (GAAA)n Simple_repeat Simple_repeat 2 153 0 4 617 383 289 19 0 chr5 4314384 4314488 -148222771 + PB1D10 SINE Alu 3 108 -9 4 617 230 385 13 0 chr5 4314509 4314587 -148222672 - MER58B DNA MER1_type -256 85 7 4 617 2198 124 75 18 chr5 4314738 4315125 -148222134 + RLTR9E LTR ERVK 1 409 0 4 617 1654 140 45 137 chr5 4315604 4316027 -148221232 + ORR1C2 LTR MaLR 1 384 0 4 617 234 375 30 23 chr5 4316156 4316287 -148220972 + MIR SINE MIR 104 235 -27 4 617 222 234 188 0 chr5 4317779 4317843 -148219416 - MIRb SINE MIR -20 248 173 4 617 4643 99 50 18 chr5 4317893 4318086 -148219173 - Lx2 LINE L1 0 6997 6787 4 617 2371 148 10 15 chr5 4318086 4318497 -148218762 + RLTR9E LTR ERVK 1 409 0 4 617 4643 99 50 18 chr5 4318497 4318611 -148218648 - Lx2 LINE L1 -211 6786 6677 4 617 4233 43 4 2 chr5 4318611 4319122 -148218137 + RLTR1B LTR ERV1 1 512 0 4 617 4643 99 50 18 chr5 4319122 4319490 -148217769 - Lx2 LINE L1 -321 6676 6299 4 617 3497 87 13 10 chr5 4319490 4319526 -148217733 + Lx2 LINE L1 5761 5796 -1201 4 617 4033 64 1 134 chr5 4319526 4320176 -148217083 - LTRIS2 LTR ERV1 0 564 1 4 617 3497 87 13 10 chr5 4320176 4320662 -148216597 + Lx2 LINE L1 5797 6285 -712 4 617 266 300 12 12 chr5 4320713 4320794 -148216465 - ID4_ SINE ID -1 82 2 4 617 423 173 0 0 chr5 4321357 4321438 -148215821 + T-rich Low_complexity Low_complexity 1 81 0 4 617 256 83 0 0 chr5 4322532 4322568 -148214691 - MLT2B5 LTR ERVL -647 70 35 4 617 321 285 97 8 chr5 4323291 4323415 -148213844 + MIR3 SINE MIR 65 199 -9 4 617 249 182 0 0 chr5 4323790 4323845 -148213414 + (ATG)n Simple_repeat Simple_repeat 2 56 0 4 617 367 339 70 48 chr5 4323847 4324076 -148213183 - MIR SINE MIR -28 234 1 4 617 450 322 63 26 chr5 4324980 4325248 -148212011 - B4A SINE B4 -14 278 1 4 617 21 36 0 0 chr5 4325258 4325286 -148211973 + AT_rich Low_complexity Low_complexity 1 28 0 4 618 434 153 0 35 chr5 4325725 4325840 -148211419 + GA-rich Low_complexity Low_complexity 2 112 0 4 618 270 0 0 0 chr5 4326197 4326227 -148211032 + (A)n Simple_repeat Simple_repeat 1 30 0 4 618 788 317 192 13 chr5 4326840 4327371 -148209888 - MER21B LTR ERV1 -23 840 215 4 618 372 218 132 90 chr5 4327603 4327815 -148209444 - Lx9 LINE L1 -20 7624 7404 4 618 247 299 65 0 chr5 4327930 4328007 -148209252 + ID4 SINE ID 2 83 0 4 618 1029 182 23 41 chr5 4328337 4328555 -148208704 - B3 SINE B2 -2 214 1 4 618 421 189 19 12 chr5 4329533 4329694 -148207565 + (TG)n Simple_repeat Simple_repeat 1 162 0 4 618 6256 83 7 9 chr5 4330580 4331247 -148206012 - L1_Mus4 LINE L1 0 6636 5971 4 618 1868 198 102 55 chr5 4331247 4331756 -148205503 - RMER16 LTR ERVK 0 533 1 4 618 6256 83 7 9 chr5 4331756 4331949 -148205310 - L1_Mus4 LINE L1 -666 5970 5778 4 618 28 0 0 0 chr5 4332439 4332467 -148204792 + AT_rich Low_complexity Low_complexity 1 28 0 4 618 742 324 65 65 chr5 4332637 4333035 -148204224 + MLT2C2 LTR ERVL 1 398 -66 4 618 4211 99 14 7 chr5 4333035 4333057 -148204202 + LTRIS2 LTR ERV1 3 23 -541 4 618 201 39 0 0 chr5 4333057 4333083 -148204176 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 4 618 4211 99 14 7 chr5 4333083 4333618 -148203641 + LTRIS2 LTR ERV1 24 564 0 4 618 184 343 70 42 chr5 4333689 4333832 -148203427 + L4 LINE RTE 1620 1766 -263 4 618 438 333 47 8 chr5 4334396 4334650 -148202609 + Lx9 LINE L1 7202 7465 -179 4 618 501 160 0 0 chr5 4334650 4334775 -148202484 + (CA)n Simple_repeat Simple_repeat 1 125 0 4 618 378 191 0 0 chr5 4334774 4334905 -148202354 + CT-rich Low_complexity Low_complexity 1 131 0 4 618 189 0 0 0 chr5 4336067 4336088 -148201171 + (CAG)n Simple_repeat Simple_repeat 2 22 0 4 618 22 35 0 0 chr5 4337161 4337190 -148200069 + AT_rich Low_complexity Low_complexity 1 29 0 4 618 1092 281 106 12 chr5 4337412 4337816 -148199443 + L1MA4 LINE L1 5491 5932 -368 4 618 2780 157 45 63 chr5 4338056 4338627 -148198632 + RLTR31_Mm LTR ERVK 1 561 0 4 618 1108 103 14 0 chr5 4338720 4338866 -148198393 - B1_Mus1 SINE Alu 0 148 1 4 618 867 46 0 0 chr5 4340173 4340281 -148196978 + (GAAAA)n Simple_repeat Simple_repeat 2 109 0 4 618 396 299 78 59 chr5 4340499 4340652 -148196607 - MIR SINE MIR -91 171 16 4 618 426 348 18 36 chr5 4341910 4342077 -148195182 - B4A SINE B4 -2 290 127 4 618 264 200 0 0 chr5 4342331 4342396 -148194863 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 618 355 231 11 45 chr5 4342491 4342595 -148194664 + MIRc SINE MIR 44 142 -134 4 618 22 0 0 0 chr5 4343361 4343383 -148193876 + AT_rich Low_complexity Low_complexity 1 22 0 4 618 1156 274 59 65 chr5 4343895 4344371 -148192888 - L1MA9 LINE L1 -99 6213 5741 4 618 391 177 4 0 chr5 4344379 4344474 -148192785 + B1_Mm SINE Alu 55 150 0 4 618 755 287 91 27 chr5 4344520 4344850 -148192409 - L1MA9 LINE L1 -596 5716 5366 4 618 839 306 51 6 chr5 4344910 4345262 -148191997 - L1MA9 LINE L1 -858 5282 4915 4 618 40 37 0 0 chr5 4345266 4345320 -148191939 + AT_rich Low_complexity Low_complexity 1 54 0 4 618 203 176 0 0 chr5 4345372 4345406 -148191853 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 618 458 242 32 0 chr5 4345431 4345526 -148191733 - B1F SINE Alu -32 117 20 4 618 407 339 0 0 chr5 4345526 4345546 -148191713 - ID_B1 SINE B4 -29 195 81 4 618 492 280 52 81 chr5 4345553 4345825 -148191434 - L1MA9 LINE L1 -1266 4874 4611 4 618 358 228 148 0 chr5 4345846 4345947 -148191312 - PB1D9 SINE Alu -3 117 2 4 618 249 246 91 15 chr5 4345992 4346058 -148191201 - ID4 SINE ID -9 74 4 4 618 1272 271 82 125 chr5 4346092 4347030 -148190229 - L1MA9 LINE L1 -1624 4516 3623 4 618 540 240 8 16 chr5 4347022 4347149 -148190110 + Lx8 LINE L1 7224 7349 -124 4 618 322 285 62 48 chr5 4347311 4347508 -148189751 + L1MB7 LINE L1 5928 6133 -41 4 618 237 233 17 8 chr5 4348647 4348764 -148188495 + (TG)n Simple_repeat Simple_repeat 1 118 0 4 618 211 69 0 0 chr5 4348766 4348795 -148188464 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 4 618 620 159 11 11 chr5 4348796 4348974 -148188285 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 618 250 319 34 17 chr5 4349512 4349630 -148187629 + Tigger16b DNA Tigger 164 283 -54 4 618 305 308 27 27 chr5 4350178 4350288 -148186971 + MLT1J LTR MaLR 11 120 -392 4 618 271 195 234 0 chr5 4350298 4350375 -148186884 - PB1D7 SINE Alu 0 120 26 4 618 725 237 54 131 chr5 4350670 4350749 -148186510 + L1M2 LINE L1 3789 3858 -2285 4 618 1059 88 0 0 chr5 4350749 4350897 -148186362 + (GAA)n Simple_repeat Simple_repeat 3 150 0 4 618 725 237 54 131 chr5 4350897 4351167 -148186092 + L1M2 LINE L1 3859 4111 -2032 4 618 443 281 57 61 chr5 4351240 4351486 -148185773 + L1M2 LINE L1 4925 5169 -971 4 618 209 350 48 0 chr5 4351879 4351982 -148185277 + MIRc SINE MIR 13 120 -148 4 618 3634 40 0 0 chr5 4352320 4352716 -148184543 - MTA_Mm LTR MaLR 0 396 1 4 618 9206 48 19 1 chr5 4352716 4353794 -148183465 - MTA_Mm-int LTR MaLR 0 1098 1 4 618 3755 23 0 0 chr5 4353794 4354190 -148183069 - MTA_Mm LTR MaLR 0 396 1 4 618 252 86 0 0 chr5 4356512 4356547 -148180712 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 618 311 266 36 25 chr5 4356593 4356737 -148180522 + MLT1A0 LTR MaLR 248 408 0 4 618 340 308 68 45 chr5 4358792 4358969 -148178290 + L2a LINE L2 3229 3409 -17 4 618 245 208 36 54 chr5 4359557 4359607 -148177652 - RSINE1 SINE B4 -36 129 81 4 618 4226 105 80 24 chr5 4359607 4360366 -148176893 - RMER17D2 LTR ERVK 0 809 8 4 618 309 385 25 6 chr5 4360299 4360456 -148176803 - B4 SINE B4 -131 161 2 4 618 5066 159 43 5 chr5 4360541 4361410 -148175849 - RMER19B LTR ERVK 0 902 1 4 618 200 237 45 45 chr5 4362819 4362996 -148174263 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 4 618 458 181 9 0 chr5 4363435 4363540 -148173719 + CT-rich Low_complexity Low_complexity 2 107 0 4 618 1325 270 52 32 chr5 4363540 4363942 -148173317 - Lx6 LINE L1 -63 7397 6988 4 618 383 291 138 54 chr5 4364908 4365225 -148172034 + ORR1C2 LTR MaLR 19 379 0 4 618 488 338 39 19 chr5 4365396 4365601 -148171658 + MER20 DNA MER1_type 9 217 -2 4 618 548 314 67 18 chr5 4367193 4367417 -148169842 - MIR SINE MIR -21 241 7 4 618 746 285 14 31 chr5 4367932 4368280 -148168979 - Lx8 LINE L1 -362 7111 6688 4 618 230 222 0 0 chr5 4368295 4368349 -148168910 - Lx8 LINE L1 -839 6634 6581 4 618 314 364 25 0 chr5 4368398 4368516 -148168743 + MER5A1 DNA MER1_type 34 154 -12 4 618 38012 62 6 2 chr5 4368627 4374792 -148162467 - L1Md_F3 LINE L1 -14 6570 422 4 618 408 389 109 18 chr5 4375354 4375629 -148161630 - MER45C DNA Tip100 -646 307 8 4 618 180 310 27 40 chr5 4375783 4375857 -148161402 + MER5A DNA MER1_type 89 161 -28 5 618 10298 147 40 24 chr5 4376000 4377031 -148160228 + L1_Mur1 LINE L1 2210 3282 -2604 5 618 1115 101 14 0 chr5 4377031 4377169 -148160090 + B1_Mur4 SINE Alu 1 140 -10 5 618 198 0 0 0 chr5 4377169 4377191 -148160068 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 618 10298 147 40 24 chr5 4377200 4378063 -148159196 + L1_Mur1 LINE L1 3283 4133 -1753 5 618 2945 136 0 20 chr5 4378062 4378519 -148158740 + Lx2 LINE L1 6304 6751 -246 5 618 334 134 0 29 chr5 4378541 4378610 -148158649 + (TA)n Simple_repeat Simple_repeat 2 68 0 5 618 1140 175 70 8 chr5 4378624 4378866 -148158393 + Lx2A1 LINE L1 6746 7002 -6 5 618 1993 95 78 0 chr5 4378948 4379243 -148158016 + ORR1A2 LTR MaLR 2 319 -8 5 618 465 237 8 42 chr5 4379320 4379439 -148157820 + B1F SINE Alu 2 116 -33 5 618 495 0 0 0 chr5 4379488 4379543 -148157716 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 618 238 312 50 32 chr5 4379638 4379738 -148157521 + MIR SINE MIR 25 132 -136 5 618 885 89 0 0 chr5 4379754 4379878 -148157381 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 5 618 246 32 0 0 chr5 4380063 4380094 -148157165 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 618 332 58 18 88 chr5 4380166 4380223 -148157036 + HAL1-3A_ME LINE L1 1976 2028 -830 5 618 2923 40 3 3 chr5 4380272 4380599 -148156660 - IAPLTR2b LTR ERVK 0 327 1 5 618 6458 65 12 11 chr5 4380601 4381429 -148155830 - IAPEz-int LTR ERVK -2 6479 5651 5 618 11169 60 50 32 chr5 4381422 4382928 -148154331 - IAPEz-int LTR ERVK -4781 1700 168 5 618 240 302 0 0 chr5 4382928 4382981 -148154278 - RLTR27 LTR ERVK -34 275 223 5 618 896 137 112 6 chr5 4382981 4383150 -148154109 - IAPEz-int LTR ERVK -6286 195 9 5 618 2931 34 3 3 chr5 4383151 4383478 -148153781 - IAPLTR2b LTR ERVK 0 327 1 5 618 492 227 0 0 chr5 4383542 4383718 -148153541 + (CA)n Simple_repeat Simple_repeat 1 176 0 5 618 557 252 17 9 chr5 4383940 4384056 -148153203 + B3A SINE B2 36 152 -46 5 618 267 31 0 0 chr5 4384589 4384621 -148152638 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 618 462 291 6 0 chr5 4385371 4385537 -148151722 - L1MC3 LINE L1 -16 7769 7617 5 618 807 276 146 4 chr5 4385537 4385777 -148151482 + ORR1D2 LTR MaLR 1 274 -96 5 618 5158 31 11 0 chr5 4385777 4386351 -148150908 - L1Md_F3 LINE L1 0 6584 6005 5 618 13909 90 12 8 chr5 4386351 4388973 -148148286 - L1Md_A LINE L1 -2858 3025 396 5 618 442 194 45 18 chr5 4388976 4389086 -148148173 + ORR1D2 LTR MaLR 257 369 -1 5 618 573 271 11 56 chr5 4389580 4389760 -148147499 - L1MC3 LINE L1 -290 7495 7324 5 618 936 287 69 11 chr5 4390436 4390799 -148146460 - MLT1B LTR MaLR -2 388 5 5 618 210 37 0 0 chr5 4391123 4391150 -148146109 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 618 231 298 61 41 chr5 4391182 4391280 -148145979 - MamRep605 Unknown Unknown -252 624 525 5 618 2697 124 22 19 chr5 4391958 4392368 -148144891 - Lx LINE L1 -6 6648 6238 5 618 1499 275 67 26 chr5 4392458 4392709 -148144550 - Lx8 LINE L1 -28 7445 7169 5 618 3717 18 2 0 chr5 4392709 4393104 -148144155 + MTA_Mm LTR MaLR 1 396 0 5 618 1499 275 67 26 chr5 4393104 4393386 -148143873 - Lx8 LINE L1 -305 7168 6892 5 618 1188 96 0 0 chr5 4394191 4394337 -148142922 + B1_Mus1 SINE Alu 3 148 0 5 618 218 94 30 30 chr5 4394989 4395055 -148142204 + A-rich Low_complexity Low_complexity 4 69 0 5 618 2392 100 154 11 chr5 4395249 4395612 -148141647 + RLTR9F LTR ERVK 1 415 0 5 618 378 315 0 35 chr5 4395762 4395877 -148141382 + PB1D10 SINE Alu 1 111 -6 5 618 718 319 24 37 chr5 4396052 4396348 -148140911 + B4A SINE B4 1 292 0 5 618 427 302 42 14 chr5 4396716 4396931 -148140328 + L1_Mur3 LINE L1 5187 5407 -473 5 618 851 246 50 0 chr5 4396952 4397131 -148140128 + B4 SINE B4 33 220 -72 5 618 775 306 134 5 chr5 4397296 4397805 -148139454 + L1MA4A LINE L1 5446 6009 -282 5 618 276 258 22 33 chr5 4399180 4399272 -148137987 + GA-rich Low_complexity Low_complexity 4 94 0 5 618 658 246 107 5 chr5 4400965 4401181 -148136078 - L1MB3 LINE L1 -196 5987 5750 5 618 1323 182 60 70 chr5 4401385 4401769 -148135490 + RMER17C LTR ERVK 1 380 -30 5 618 315 0 0 0 chr5 4401774 4401809 -148135450 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 618 572 121 122 62 chr5 4401843 4402074 -148135185 + IAPLTR2b LTR ERVK 216 475 0 5 618 723 107 19 0 chr5 4402074 4402177 -148135082 - Lx2 LINE L1 -118 6879 6775 5 618 3487 110 0 8 chr5 4402175 4402671 -148134588 - Lx2 LINE L1 -352 6645 6154 5 618 8033 57 2 5 chr5 4402705 4403711 -148133548 + L1Md_F2 LINE L1 5584 6557 -25 5 618 342 0 0 0 chr5 4403714 4403752 -148133507 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 618 1740 220 110 20 chr5 4403985 4404440 -148132819 + RLTR1 LTR ERV1 129 624 0 5 618 5206 38 0 0 chr5 4404552 4405171 -148132088 - L1Md_T LINE L1 0 6582 6004 5 618 260 133 0 48 chr5 4405171 4405193 -148132066 + T-rich Low_complexity Low_complexity 2 23 0 5 618 38283 44 7 0 chr5 4405195 4411313 -148125946 - L1Md_T LINE L1 0 6582 484 5 618 2950 65 3 54 chr5 4412068 4412460 -148124799 - L1_Mus2 LINE L1 -1 6565 6194 5 618 227 302 0 0 chr5 4412821 4412884 -148124375 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 618 393 22 0 0 chr5 4412904 4412950 -148124309 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 618 243 215 0 0 chr5 4412959 4413024 -148124235 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 618 248 245 0 0 chr5 4413136 4413189 -148124070 + (CATA)n Simple_repeat Simple_repeat 4 56 0 5 618 408 301 85 35 chr5 4413321 4413603 -148123656 + L1ME3B LINE L1 5650 5945 -295 5 618 432 0 0 0 chr5 4413936 4413984 -148123275 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 618 715 142 0 34 chr5 4414013 4414130 -148123129 + L1_Mur2 LINE L1 5503 5615 -262 5 618 4032 106 37 43 chr5 4414130 4414759 -148122500 + Lx2A LINE L1 6384 7008 0 5 618 316 95 152 45 chr5 4414759 4414789 -148122470 + L1_Mus4 LINE L1 5622 5659 -977 5 618 796 241 52 75 chr5 4415178 4415529 -148121730 - RLTR20D LTR ERVK -83 451 1 5 618 5769 127 72 23 chr5 4415535 4415709 -148121550 - MYSERV16_I-int LTR ERVK -7 2319 2146 5 618 1338 72 27 27 chr5 4415709 4415894 -148121365 + B2_Mm2 SINE B2 2 186 -9 5 618 5769 127 72 23 chr5 4415894 4416809 -148120450 - MYSERV16_I-int LTR ERVK -181 2145 1177 5 618 265 75 19 19 chr5 4416944 4416998 -148120261 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 618 461 17 17 0 chr5 4417122 4417180 -148120079 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 618 2578 153 35 31 chr5 4418104 4418583 -148118676 + RLTR20B2 LTR ERVK 80 560 0 5 618 306 0 0 0 chr5 4419403 4419437 -148117822 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 5 618 300 152 0 0 chr5 4419442 4419488 -148117771 - HAL1-3A_ME LINE L1 -838 2020 1975 5 618 939 308 78 43 chr5 4419804 4419999 -148117260 - L1MA5A LINE L1 -1572 6124 5919 5 618 230 0 0 32 chr5 4419999 4420030 -148117229 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 618 1229 299 85 47 chr5 4420030 4420933 -148116326 - L1MA5A LINE L1 -358 5939 4940 5 618 22 35 0 0 chr5 4421000 4421029 -148116230 + AT_rich Low_complexity Low_complexity 1 29 0 5 618 266 167 17 0 chr5 4421656 4421716 -148115543 + GA-rich Low_complexity Low_complexity 2 62 0 5 618 1087 202 118 16 chr5 4422351 4422610 -148114649 + MTD LTR MaLR 14 282 -137 5 618 1167 28 0 63 chr5 4422610 4422800 -148114459 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 5 618 1087 194 126 8 chr5 4422800 4422821 -148114438 + MTD LTR MaLR 283 310 -109 5 618 2487 69 35 37 chr5 4422824 4423198 -148114061 - RLTR10A LTR ERVK 0 411 39 5 618 621 0 0 0 chr5 4423198 4423267 -148113992 + (CTTTG)n Simple_repeat Simple_repeat 3 71 0 5 618 1248 91 0 0 chr5 4423267 4423442 -148113817 + (TCTCC)n Simple_repeat Simple_repeat 5 180 0 5 618 1193 83 0 0 chr5 4423448 4423593 -148113666 - B1_Mus2 SINE Alu -2 145 1 5 618 389 261 100 8 chr5 4423593 4423713 -148113546 + MTD LTR MaLR 289 419 0 5 618 502 220 77 12 chr5 4424408 4424578 -148112681 + Charlie5 DNA MER1_type 17 197 -2427 5 618 452 308 33 27 chr5 4424734 4424884 -148112375 + RSINE1 SINE B4 3 153 -12 5 618 252 122 0 0 chr5 4424892 4424933 -148112326 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 618 31 44 0 0 chr5 4425103 4425148 -148112111 + AT_rich Low_complexity Low_complexity 1 45 0 5 618 664 229 41 20 chr5 4426908 4427055 -148110204 - B3 SINE B2 0 216 67 5 618 275 257 52 17 chr5 4427371 4427486 -148109773 + B1F2 SINE Alu 31 149 0 5 618 281 0 39 39 chr5 4427489 4427540 -148109719 + (CAAA)n Simple_repeat Simple_repeat 3 53 0 5 618 295 292 42 0 chr5 4429116 4429212 -148108047 + L1MA9 LINE L1 6185 6284 -28 5 618 30 45 0 0 chr5 4429496 4429540 -148107719 + AT_rich Low_complexity Low_complexity 1 44 0 5 618 317 243 0 61 chr5 4429735 4429849 -148107410 + CT-rich Low_complexity Low_complexity 2 108 0 5 618 372 290 29 29 chr5 4429849 4429952 -148107307 - PB1D10 SINE Alu -14 103 1 5 618 192 333 32 0 chr5 4430321 4430384 -148106875 - L4 LINE RTE -948 1081 1017 5 618 405 0 0 0 chr5 4430796 4430841 -148106418 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 618 465 19 0 0 chr5 4430841 4430895 -148106364 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 618 180 0 0 0 chr5 4432054 4432074 -148105185 + (T)n Simple_repeat Simple_repeat 1 20 0 5 618 400 306 127 0 chr5 4432266 4432439 -148104820 - Lx8 LINE L1 -274 7199 7005 5 618 637 234 144 25 chr5 4434196 4434398 -148102861 - L1M4 LINE L1 -1420 4726 4501 5 618 405 0 0 0 chr5 4434400 4434445 -148102814 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 5 618 1502 239 112 53 chr5 4434467 4434940 -148102319 + RMER15 LTR ERVL 5 505 -70 5 618 4650 72 7 8 chr5 4434949 4435539 -148101720 - L1Md_F2 LINE L1 -13 6569 5981 5 618 2654 40 37 0 chr5 4435544 4435868 -148101391 + L1Md_F3 LINE L1 6249 6584 0 5 618 25939 104 40 14 chr5 4435875 4440389 -148096870 - L1Md_F2 LINE L1 -1007 4876 244 5 618 2452 175 80 12 chr5 4440413 4440899 -148096360 - RLTR28 LTR ERVL -2 522 4 5 618 317 261 148 0 chr5 4440932 4441020 -148096239 - ID_B1 SINE B4 -12 212 112 5 618 683 256 68 21 chr5 4441046 4441110 -148096149 - L1M4 LINE L1 -1664 4482 4421 5 618 1057 209 22 39 chr5 4441110 4441339 -148095920 - URR1B DNA MER1_type 0 225 1 6 618 683 256 68 21 chr5 4441339 4441554 -148095705 - L1M4 LINE L1 -1726 4420 4190 5 618 488 335 199 23 chr5 4441567 4442099 -148095160 - LTR82A LTR ERVL -236 636 11 6 618 12770 137 49 38 chr5 4442131 4444887 -148092372 + Lx5 LINE L1 541 3461 -2416 6 618 1132 89 14 0 chr5 4444887 4445033 -148092226 + B1_Mus1 SINE Alu 1 148 0 6 618 12770 135 43 38 chr5 4445033 4445213 -148092046 + Lx5 LINE L1 3462 3632 -2245 6 618 464 143 0 0 chr5 4445212 4445282 -148091977 + Lx5 LINE L1 4205 4274 -1603 6 618 31 0 0 0 chr5 4445312 4445343 -148091916 + AT_rich Low_complexity Low_complexity 1 31 0 6 618 1119 52 37 0 chr5 4445343 4445479 -148091780 - B1_Mus2 SINE Alu -5 142 2 6 618 9921 86 17 6 chr5 4445695 4447802 -148089457 - L1_Mus1 LINE L1 0 6567 4439 6 618 8343 180 32 12 chr5 4447829 4450542 -148086717 + Lx5 LINE L1 4281 7050 0 6 618 292 296 96 0 chr5 4450631 4450756 -148086503 + L2b LINE L2 2515 2651 -768 6 618 416 357 122 33 chr5 4450922 4451487 -148085772 + L2b LINE L2 2756 3370 -5 6 618 300 312 47 54 chr5 4451508 4451657 -148085602 + B4A SINE B4 2 149 -143 6 77 30978 83 35 4 chr5 4451675 4456632 -148080627 + L1Md_F2 LINE L1 480 5586 -297 6 619 8420 53 3 4 chr5 4456632 4457629 -148079630 + L1Md_F2 LINE L1 5587 6582 0 6 619 5222 78 0 0 chr5 4457629 4458307 -148078952 + L1Md_F2 LINE L1 2353 3030 -2853 6 619 2031 90 83 46 chr5 4458307 4458655 -148078604 - RLTR10B2 LTR ERVK 0 365 5 6 619 297 71 0 0 chr5 4458676 4458718 -148078541 - RLTR10B2 LTR ERVK -250 42 1 6 619 7609 59 0 28 chr5 4458718 4459681 -148077578 - MMERVK10C-int LTR ERVK 0 7581 6646 6 619 22171 58 7 1 chr5 4459667 4462367 -148074892 - MMERVK10C-int LTR ERVK -1771 5810 3095 6 619 2510 73 0 0 chr5 4462674 4462991 -148074268 - MMERVK10C-int LTR ERVK -7264 317 1 6 619 2021 93 83 46 chr5 4462991 4463339 -148073920 - RLTR10B2 LTR ERVK 0 365 5 6 619 260 56 0 0 chr5 4463338 4463374 -148073885 - RLTR10B2 LTR ERVK -256 36 1 6 619 18700 86 8 1 chr5 4463374 4465920 -148071339 + L1Md_F2 LINE L1 3025 5586 -297 6 619 7956 79 5 11 chr5 4465921 4466922 -148070337 + L1Md_F2 LINE L1 5588 6582 0 6 619 266 346 172 6 chr5 4468211 4468368 -148068891 - MER63A DNA AcHobo 0 210 28 6 619 229 217 22 0 chr5 4469088 4469134 -148068125 + MER45B DNA Tip100 993 1039 -1 6 619 318 267 23 0 chr5 4469875 4469961 -148067298 + MLT2C2 LTR ERVL 1 88 -376 6 619 863 284 52 120 chr5 4470434 4470502 -148066757 + MLT2C2 LTR ERVL 70 134 -330 6 619 413 206 0 42 chr5 4470502 4470573 -148066686 - ID4_ SINE ID -13 70 3 6 619 863 284 52 120 chr5 4470573 4470928 -148066331 + MLT2C2 LTR ERVL 135 464 0 6 619 615 294 126 103 chr5 4470989 4471395 -148065864 + LTR33 LTR ERVL 101 515 0 6 619 238 247 289 0 chr5 4471396 4471493 -148065766 - MIR SINE MIR -105 157 33 6 619 184 162 54 0 chr5 4471502 4471539 -148065720 + MIRc SINE MIR 104 142 -126 6 619 642 268 155 22 chr5 4471561 4471984 -148065275 + MLT2B4 LTR ERVL 3 459 -56 6 619 267 278 82 18 chr5 4472208 4472318 -148064941 - MIR SINE MIR -112 150 34 6 619 813 264 23 0 chr5 4472648 4472822 -148064437 + Lx9 LINE L1 6384 6561 -1083 6 619 1010 291 46 6 chr5 4472926 4473275 -148063984 + MLT1A0 LTR MaLR 3 365 0 6 619 291 247 128 12 chr5 4473302 4473388 -148063871 + ID_B1 SINE B4 122 217 -7 6 619 674 244 54 12 chr5 4474077 4474243 -148063016 - MER45A DNA Tip100 -5 173 1 6 619 680 309 76 113 chr5 4474348 4474834 -148062425 - BLACKJACK DNA AcHobo -1142 1802 1335 6 619 508 296 30 0 chr5 4474866 4474998 -148062261 + B1F2 SINE Alu 2 137 -12 6 619 376 51 17 17 chr5 4474998 4475058 -148062201 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 6 619 281 350 0 0 chr5 4475088 4475205 -148062054 - BLACKJACK DNA AcHobo -1816 1128 1012 6 619 243 125 0 0 chr5 4475575 4475615 -148061644 + (T)n Simple_repeat Simple_repeat 1 40 0 6 619 763 282 91 63 chr5 4475828 4476225 -148061034 - RLTR26 LTR ERVK -138 504 97 6 619 301 310 30 0 chr5 4476421 4476521 -148060738 - BLACKJACK DNA AcHobo -2812 132 30 6 619 636 81 0 0 chr5 4476526 4476613 -148060646 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 6 619 7608 68 48 6 chr5 4476699 4477803 -148059456 - L1_Mus3 LINE L1 -1 6637 5492 6 619 968 242 141 15 chr5 4477946 4478287 -148058972 - MTD LTR MaLR -7 412 29 6 619 239 296 56 22 chr5 4478587 4478677 -148058582 - ORR1D2 LTR MaLR -277 93 1 6 619 557 303 125 36 chr5 4480648 4480977 -148056282 + MER74C LTR ERVL 54 411 -49 6 619 956 257 158 8 chr5 4481044 4481421 -148055838 + Lx8 LINE L1 7038 7471 -2 6 619 280 287 68 25 chr5 4481689 4481715 -148055544 + CYRA11_Mm Unknown Y-chromosome 148 178 -439 6 619 572 171 8 31 chr5 4481715 4481842 -148055417 - URR1B DNA MER1_type 0 225 102 6 619 297 0 0 0 chr5 4482112 4482145 -148055114 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 619 2362 120 6 0 chr5 4482555 4482879 -148054380 - ORR1A3 LTR MaLR 0 326 1 6 619 926 332 67 38 chr5 4483045 4483464 -148053795 + MT2A LTR ERVL 103 533 0 6 619 310 231 26 0 chr5 4483467 4483545 -148053714 + MER53 DNA hAT 87 166 -27 6 619 218 156 0 22 chr5 4484022 4484068 -148053191 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 619 681 190 72 56 chr5 4484068 4484183 -148053076 + ORR1B1 LTR MaLR 39 148 -246 6 619 207 69 0 0 chr5 4484183 4484212 -148053047 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 619 681 190 72 56 chr5 4484212 4484291 -148052968 + ORR1B1 LTR MaLR 149 235 -159 6 619 201 299 11 11 chr5 4484801 4484889 -148052370 + CT-rich Low_complexity Low_complexity 1 88 0 6 619 470 96 0 14 chr5 4485449 4485523 -148051736 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 6 619 493 253 138 21 chr5 4486986 4487293 -148049966 + Charlie4 DNA MER1_type 37 387 -121 6 619 324 48 0 0 chr5 4487582 4487624 -148049635 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 619 485 110 0 12 chr5 4488253 4488336 -148048923 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 6 619 426 85 0 0 chr5 4488588 4488647 -148048612 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 619 213 108 0 0 chr5 4489101 4489138 -148048121 + (TTGTG)n Simple_repeat Simple_repeat 4 40 0 6 619 257 327 10 19 chr5 4490731 4490834 -148046425 + LTR16C LTR ERVL 287 388 -101 6 619 561 266 18 134 chr5 4491994 4492016 -148045243 - B3A SINE B2 -6 192 171 6 619 1305 83 0 0 chr5 4492016 4492196 -148045063 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 619 561 266 18 134 chr5 4492196 4492390 -148044869 - B3A SINE B2 -28 170 1 6 619 245 213 12 85 chr5 4493238 4493320 -148043939 - MADE2 DNA Mariner -4 76 1 6 619 1649 199 88 33 chr5 4493417 4493505 -148043754 - RLTR20A LTR ERVK -2 539 437 6 619 926 118 0 11 chr5 4493505 4493685 -148043574 + (CA)n Simple_repeat Simple_repeat 2 179 0 6 619 1649 199 88 33 chr5 4493685 4494053 -148043206 - RLTR20A LTR ERVK -105 436 58 6 619 1557 229 216 21 chr5 4494387 4494868 -148042391 - RMER15 LTR ERVL 0 575 1 6 619 229 254 160 56 chr5 4494872 4494997 -148042262 - MamGypLTR1c LTR Gypsy -533 270 133 6 619 1377 175 44 40 chr5 4495547 4495868 -148041391 + Lx4B LINE L1 6733 7054 -4 6 619 534 31 0 0 chr5 4496071 4496135 -148041124 + (GAAAA)n Simple_repeat Simple_repeat 2 65 0 6 619 200 34 0 33 chr5 4497338 4497368 -148039891 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 6 619 806 128 0 11 chr5 4497497 4497679 -148039580 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 619 272 359 0 8 chr5 4497684 4497802 -148039457 - Lx8 LINE L1 -312 7161 7045 6 619 821 88 17 56 chr5 4500098 4500278 -148036981 + CT-rich Low_complexity Low_complexity 4 176 0 1 619 413 75 0 0 chr5 4500278 4500331 -148036928 + (TTTC)n Simple_repeat Simple_repeat 1 53 0 2 619 332 367 108 13 chr5 4500507 4500739 -148036520 + L4 LINE RTE 1239 1492 -537 3 619 339 44 0 0 chr5 4500954 4500999 -148036260 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 4 619 183 158 136 34 chr5 4501094 4501153 -148036106 + MIR SINE MIR 33 97 -165 5 619 371 291 10 0 chr5 4501188 4501291 -148035968 + PB1D10 SINE Alu 5 108 -9 6 619 1175 35 47 0 chr5 4501291 4501548 -148035711 + (CCAA)n Simple_repeat Simple_repeat 1 269 0 7 619 389 273 297 0 chr5 4501922 4502087 -148035172 - ID_B1 SINE B4 -2 222 9 8 619 316 302 9 28 chr5 4502312 4502421 -148034838 - PB1D10 SINE Alu -8 109 3 9 619 21 0 0 0 chr5 4503166 4503187 -148034072 + AT_rich Low_complexity Low_complexity 1 21 0 1 619 284 259 97 81 chr5 4504272 4504457 -148032802 - MLT1K LTR MaLR -29 566 379 1 619 335 351 0 0 chr5 4504763 4504857 -148032402 + PB1D10 SINE Alu 19 112 -5 1 619 256 308 12 60 chr5 4504962 4505045 -148032214 - ID4_ SINE ID -4 79 1 1 619 1118 106 0 0 chr5 4505139 4505280 -148031979 - B1_Mus1 SINE Alu -7 141 1 1 619 22 35 0 0 chr5 4505514 4505543 -148031716 + AT_rich Low_complexity Low_complexity 1 29 0 1 619 1053 270 119 28 chr5 4506249 4506676 -148030583 - Charlie4a DNA MER1_type -26 482 17 1 619 7241 65 11 1 chr5 4506855 4507771 -148029488 - L1Md_F2 LINE L1 -1 6581 5657 1 619 3590 43 7 16 chr5 4507762 4508215 -148029044 + L1Md_F2 LINE L1 5254 5702 -181 1 619 357 24 0 0 chr5 4509195 4509237 -148028022 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 1 619 1895 145 42 45 chr5 4509615 4509969 -148027290 - ORR1B2 LTR MaLR -12 355 3 1 619 592 313 45 0 chr5 4510025 4510223 -148027036 + MER2 DNA MER2_type 138 344 -1 2 619 274 329 88 60 chr5 4510534 4510751 -148026508 - MLT1J-int LTR MaLR -454 933 711 2 619 443 237 21 11 chr5 4511309 4511570 -148025689 + CT-rich Low_complexity Low_complexity 1 263 0 2 619 1150 279 47 35 chr5 4511782 4512183 -148025076 + L1MA6 LINE L1 5678 6083 -217 2 619 21 71 0 0 chr5 4512189 4512231 -148025028 + AT_rich Low_complexity Low_complexity 1 42 0 2 619 11338 109 21 2 chr5 4512233 4514497 -148022762 + L1_Mus1 LINE L1 584 2893 -2990 2 619 2464 111 39 8 chr5 4514497 4514853 -148022406 + IAPLTR1_Mm LTR ERVK 1 367 0 2 619 13793 46 115 26 chr5 4514883 4517021 -148020238 + IAPEz-int LTR ERVK 18 2345 -4136 2 619 394 89 0 0 chr5 4517020 4517076 -148020183 + IAPEz-int LTR ERVK 2719 2774 -3707 2 619 3189 20 0 0 chr5 4517074 4517431 -148019828 + IAPEz-int LTR ERVK 4001 4357 -2124 2 619 5924 63 13 18 chr5 4517422 4518197 -148019062 + IAPEz-int LTR ERVK 5709 6479 -2 2 619 2464 111 39 8 chr5 4518199 4518555 -148018704 + IAPLTR1_Mm LTR ERVK 1 367 0 2 619 20819 92 14 2 chr5 4518555 4522196 -148015063 + L1_Mus1 LINE L1 2888 6567 0 2 619 408 252 61 0 chr5 4522208 4522323 -148014936 + L1MA6 LINE L1 6106 6227 -73 2 619 180 0 0 0 chr5 4522698 4522718 -148014541 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 619 1173 83 7 0 chr5 4524423 4524568 -148012691 + B1_Mus1 SINE Alu 3 148 0 2 619 551 272 62 53 chr5 4526074 4526299 -148010960 + Charlie22a DNA MER1_type 106 332 -159 2 619 240 86 0 0 chr5 4527982 4528017 -148009242 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 3 619 625 245 21 35 chr5 4528873 4529008 -148008251 + B3A SINE B2 27 160 -38 3 619 561 88 0 0 chr5 4529008 4529088 -148008171 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 619 2256 98 12 37 chr5 4529120 4529447 -148007812 + ORR1A2 LTR MaLR 1 319 -8 3 619 24 0 0 0 chr5 4529786 4529810 -148007449 + AT_rich Low_complexity Low_complexity 1 24 0 3 619 595 301 95 56 chr5 4531240 4531472 -148005787 - MLT1J2 LTR MaLR -168 276 36 3 619 470 290 16 78 chr5 4531930 4532121 -148005138 + ORR1E LTR MaLR 1 179 -180 3 619 308 18 0 82 chr5 4532750 4532811 -148004448 + (CAAAA)n Simple_repeat Simple_repeat 4 59 0 3 619 264 244 112 25 chr5 4533543 4533623 -148003636 + PB1 SINE Alu 16 102 -25 3 619 300 318 34 11 chr5 4534014 4534103 -148003156 + PB1D10 SINE Alu 27 117 0 3 619 180 220 0 63 chr5 4534532 4534595 -148002664 - L3b LINE CR1 -236 246 188 4 619 230 246 53 40 chr5 4536895 4536971 -148000288 - MLT1J2 LTR MaLR -295 153 77 4 619 237 323 36 2 chr5 4537138 4537252 -148000007 + MIRb SINE MIR 106 230 -38 4 619 205 88 29 0 chr5 4537301 4537335 -147999924 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 4 619 278 380 2 35 chr5 4537485 4537628 -147999631 + MIR3 SINE MIR 32 164 -44 4 619 195 179 0 25 chr5 4538291 4538331 -147998928 + MIRc SINE MIR 114 152 -116 4 619 1049 81 0 7 chr5 4538338 4538488 -147998771 + (TCTCC)n Simple_repeat Simple_repeat 3 151 0 4 619 405 0 0 0 chr5 4538500 4538545 -147998714 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 619 309 109 0 0 chr5 4539722 4539768 -147997491 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 619 514 315 72 116 chr5 4539915 4540278 -147996981 + MLT1A0 LTR MaLR 1 347 -18 4 619 641 285 0 7 chr5 4540541 4540693 -147996566 + RSINE1 SINE B4 4 154 -11 5 619 465 19 0 0 chr5 4540704 4540758 -147996501 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 619 573 351 48 46 chr5 4543523 4544063 -147993196 - L1M4c LINE L1 -4732 2017 1477 5 619 402 296 21 21 chr5 4544090 4544280 -147992979 - L1M4c LINE L1 -6381 226 37 5 619 806 323 27 8 chr5 4544360 4544725 -147992534 + L1MA7 LINE L1 5879 6250 -41 5 619 227 114 23 0 chr5 4545031 4545075 -147992184 + (TAA)n Simple_repeat Simple_repeat 2 46 0 5 619 750 183 6 12 chr5 4545684 4545855 -147991404 + CT-rich Low_complexity Low_complexity 2 171 0 5 619 3756 219 38 11 chr5 4546113 4546962 -147990297 - Lx2B LINE L1 0 7000 6129 5 619 21 0 0 0 chr5 4549180 4549201 -147988058 + AT_rich Low_complexity Low_complexity 1 21 0 5 619 6756 175 38 9 chr5 4549368 4550541 -147986718 + Lx5 LINE L1 5844 7050 0 5 619 209 57 0 28 chr5 4551809 4551845 -147985414 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 619 1236 36 0 0 chr5 4551847 4551985 -147985274 - B1_Mus1 SINE Alu -10 138 1 6 619 7084 112 22 0 chr5 4551985 4553174 -147984085 - Lx LINE L1 -31 6623 5409 6 619 8915 143 29 3 chr5 4553165 4554639 -147982620 + L1_Mur2 LINE L1 3893 5403 -474 6 619 333 174 0 0 chr5 4554694 4554763 -147982496 + T-rich Low_complexity Low_complexity 1 69 0 6 619 3043 172 99 14 chr5 4556641 4557195 -147980064 - Lx5 LINE L1 -7 7043 6443 6 619 288 0 0 0 chr5 4557214 4557246 -147980013 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 619 23 33 0 0 chr5 4558434 4558464 -147978795 + AT_rich Low_complexity Low_complexity 1 30 0 6 619 272 48 24 0 chr5 4558553 4558595 -147978664 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 6 619 1954 181 27 16 chr5 4558702 4559072 -147978187 + ORR1D1 LTR MaLR 1 374 0 6 619 216 349 83 8 chr5 4560118 4560251 -147977008 - MIRb SINE MIR -79 189 47 6 619 655 258 14 12 chr5 4560364 4560513 -147976746 - ID_B1 SINE B4 -68 224 83 7 619 409 331 104 55 chr5 4561516 4562113 -147975146 + L2 LINE L2 1695 2320 -1099 7 619 319 261 0 0 chr5 4562311 4562380 -147974879 - ID4_ SINE ID -10 73 5 7 619 229 356 66 19 chr5 4563250 4563462 -147973797 - L2a LINE L2 0 3426 3205 7 619 279 0 0 0 chr5 4563480 4563511 -147973748 + (GGGAGA)n Simple_repeat Simple_repeat 4 34 0 7 619 197 188 0 30 chr5 4563513 4563579 -147973680 + (CAGAGA)n Simple_repeat Simple_repeat 1 64 0 7 619 25 31 0 0 chr5 4563675 4563707 -147973552 + AT_rich Low_complexity Low_complexity 1 32 0 7 619 357 330 170 8 chr5 4564866 4565343 -147971916 - L1ME3B LINE L1 -229 6011 5458 7 619 219 226 23 38 chr5 4565485 4565618 -147971641 + (TATAA)n Simple_repeat Simple_repeat 5 135 0 7 619 312 242 206 24 chr5 4566536 4566701 -147970558 - L1M5 LINE L1 -373 5800 5606 7 619 189 154 0 0 chr5 4566973 4567012 -147970247 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 619 520 317 7 7 chr5 4567033 4567179 -147970080 - B4A SINE B4 0 292 147 8 619 262 270 28 147 chr5 4567109 4567259 -147970000 - B1_Mur4 SINE Alu -11 139 3 8 619 846 209 7 7 chr5 4567585 4567734 -147969525 + B1_Mur4 SINE Alu 1 149 -1 8 619 213 289 53 0 chr5 4567794 4567870 -147969389 - B1F SINE Alu -1 148 69 8 619 352 230 14 0 chr5 4567802 4567876 -147969383 - ID_B1 SINE B4 -9 215 141 8 619 216 0 0 0 chr5 4567877 4567901 -147969358 + (TTA)n Simple_repeat Simple_repeat 2 25 0 8 619 354 293 39 39 chr5 4567927 4568055 -147969204 - RSINE1 SINE B4 -36 129 2 8 619 523 277 30 55 chr5 4568055 4568187 -147969072 - ID_B1 SINE B4 -71 153 26 8 619 198 143 0 0 chr5 4568507 4568542 -147968717 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 8 619 225 304 38 0 chr5 4568554 4568633 -147968626 - PB1D10 SINE Alu -14 103 22 9 619 207 0 0 0 chr5 4568953 4568976 -147968283 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 619 756 185 54 0 chr5 4569336 4569466 -147967793 - B1_Mur2 SINE Alu -11 138 2 9 619 7548 65 12 5 chr5 4569476 4571106 -147966153 - L1Md_F2 LINE L1 -10 6572 4932 9 619 1294 252 80 14 chr5 4571128 4571478 -147965781 - ORR1D1 LTR MaLR 0 374 2 9 619 187 133 22 22 chr5 4571859 4571905 -147965354 + CT-rich Low_complexity Low_complexity 3 48 0 9 619 2034 244 22 0 chr5 4571943 4572353 -147964906 - MTD LTR MaLR 0 419 1 9 619 21 0 0 0 chr5 4572375 4572396 -147964863 + AT_rich Low_complexity Low_complexity 1 21 0 9 619 383 250 31 0 chr5 4572430 4572526 -147964733 - L1M5 LINE L1 -2983 3163 3065 9 619 465 278 63 16 chr5 4572730 4572876 -147964383 + B3A SINE B2 21 171 -45 9 619 282 56 0 0 chr5 4572876 4572912 -147964347 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 619 402 299 29 43 chr5 4572912 4572934 -147964325 + B3 SINE B2 172 193 -23 9 619 426 340 52 47 chr5 4573406 4573619 -147963640 - MIRb SINE MIR -37 231 18 1 619 481 120 11 11 chr5 4573655 4573748 -147963511 + (TA)n Simple_repeat Simple_repeat 1 93 0 1 619 28 0 0 0 chr5 4576426 4576454 -147960805 + AT_rich Low_complexity Low_complexity 1 28 0 1 619 513 58 0 0 chr5 4578006 4578075 -147959184 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 619 342 0 0 0 chr5 4581047 4581085 -147956174 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 619 416 146 0 10 chr5 4581085 4581189 -147956070 + GA-rich Low_complexity Low_complexity 2 104 0 1 619 761 144 0 6 chr5 4581206 4581381 -147955878 + (GA)n Simple_repeat Simple_repeat 2 175 0 1 619 258 414 14 36 chr5 4581415 4581553 -147955706 - B4A SINE B4 -157 135 1 1 619 449 160 94 0 chr5 4582062 4582168 -147955091 - RMER1A Other Other -4 1026 911 1 619 1567 258 41 0 chr5 4582181 4582545 -147954714 - RMER1B Other Other -681 385 7 1 619 1444 254 111 17 chr5 4583334 4583803 -147953456 - Lx8 LINE L1 -3 7470 6958 1 619 517 314 20 40 chr5 4584575 4584774 -147952485 - MLT1J1 LTR MaLR -236 208 14 1 619 460 241 11 0 chr5 4584937 4585024 -147952235 - RLTR20D LTR ERVK 0 568 481 1 619 270 0 0 0 chr5 4585024 4585054 -147952205 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 619 1454 106 86 5 chr5 4585222 4585431 -147951828 - URR1A DNA MER1_type 0 226 1 1 619 183 325 109 42 chr5 4585441 4585560 -147951699 + MIRb SINE MIR 119 245 -23 1 619 225 0 0 0 chr5 4585663 4585688 -147951571 + (A)n Simple_repeat Simple_repeat 1 25 0 1 619 395 106 15 0 chr5 4586412 4586478 -147950781 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 619 503 304 130 37 chr5 4586492 4586738 -147950521 - B4A SINE B4 -20 272 4 1 77 1442 191 69 31 chr5 4587141 4587540 -147949719 + RLTR1 LTR ERV1 135 624 0 1 620 470 332 37 5 chr5 4587570 4587758 -147949501 + MIRb SINE MIR 23 216 -52 1 620 239 262 68 45 chr5 4587830 4587918 -147949341 - MTE2b LTR MaLR -21 358 269 1 620 1815 226 8 26 chr5 4589299 4589685 -147947574 - MTD LTR MaLR -8 411 33 1 620 198 0 0 0 chr5 4589685 4589707 -147947552 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 620 450 0 0 0 chr5 4589707 4589756 -147947503 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 620 609 273 71 31 chr5 4591190 4591482 -147945777 + MTEa LTR MaLR 1 365 -14 1 620 391 371 117 76 chr5 4591747 4592286 -147944973 - LTR16E2 LTR ERVL 0 568 8 1 620 1259 293 179 43 chr5 4592410 4593080 -147944179 + RMER13A LTR ERVK 98 858 -2 1 620 201 355 77 11 chr5 4593169 4593260 -147943999 - MIRc SINE MIR -63 205 109 1 620 406 135 11 22 chr5 4593501 4593592 -147943667 + T-rich Low_complexity Low_complexity 2 91 0 1 620 318 50 0 0 chr5 4593963 4594003 -147943256 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 620 537 16 0 0 chr5 4594003 4594064 -147943195 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 620 284 357 129 5 chr5 4594640 4594826 -147942433 + MIR SINE MIR 12 220 -42 1 620 279 0 0 0 chr5 4595922 4595953 -147941306 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 620 664 206 81 54 chr5 4596522 4596707 -147940552 - B2_Mm2 SINE B2 -5 190 1 1 620 23 33 0 0 chr5 4597999 4598029 -147939230 + AT_rich Low_complexity Low_complexity 1 30 0 1 620 36225 35 0 0 chr5 4601278 4606695 -147930564 + L1Md_T LINE L1 76 5589 -297 1 620 9506 7 0 5 chr5 4606695 4607696 -147929563 + L1Md_T LINE L1 5590 6585 0 1 620 333 0 0 0 chr5 4608188 4608225 -147929034 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 620 271 336 93 16 chr5 4608412 4608669 -147928590 - L2 LINE L2 -1006 2413 2137 1 620 595 284 55 10 chr5 4609131 4609330 -147927929 - RMER15 LTR ERVL -18 557 350 1 620 225 271 98 45 chr5 4609751 4609863 -147927396 + MER53 DNA hAT 76 193 0 1 620 1378 76 5 11 chr5 4612988 4613174 -147924085 - B2_Mm2 SINE B2 -9 186 2 1 620 1162 62 7 0 chr5 4614210 4614355 -147922904 - B1_Mus2 SINE Alu 0 147 2 1 620 923 157 0 6 chr5 4614446 4614626 -147922633 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 1 620 369 0 0 0 chr5 4616282 4616323 -147920936 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 620 405 0 0 0 chr5 4616323 4616367 -147920892 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 620 1602 287 25 59 chr5 4616367 4616838 -147920421 - MT2A LTR ERVL -78 455 1 1 620 610 190 90 26 chr5 4616838 4617027 -147920232 - MERVL_2A-int LTR ERVL 0 5761 5561 1 620 2313 217 14 27 chr5 4617066 4617625 -147919634 - MERVL_2A-int LTR ERVL -2751 3010 2459 1 620 860 203 27 10 chr5 4617625 4617831 -147919428 - ORR1D1 LTR MaLR 0 394 175 1 620 371 82 13 40 chr5 4617831 4617907 -147919352 + (AGGGGG)n Simple_repeat Simple_repeat 5 78 0 1 620 863 149 30 130 chr5 4617907 4618107 -147919152 - ORR1D1 LTR MaLR -187 187 8 1 620 1183 279 60 24 chr5 4618115 4618566 -147918693 - MERVL_2A-int LTR ERVL -3298 2463 1997 1 620 1320 208 43 72 chr5 4618567 4618914 -147918345 - ORR1D1 LTR MaLR 0 374 38 1 620 408 296 8 16 chr5 4618924 4619051 -147918208 - MERVL_2A-int LTR ERVL -3761 2000 1875 1 620 314 186 93 0 chr5 4619056 4619142 -147918117 - MERVL_2A-int LTR ERVL -3985 1729 1636 1 620 2416 274 33 5 chr5 4619198 4619932 -147917327 - MERVL_2A-int LTR ERVL -4185 1576 823 1 620 866 255 104 50 chr5 4619939 4620436 -147916823 - MERVL_2A-int LTR ERVL -5193 521 6 1 620 307 255 131 9 chr5 4620451 4620558 -147916701 - MT2A LTR ERVL -10 523 404 1 620 425 273 67 0 chr5 4620826 4620976 -147916283 - L3 LINE CR1 -242 4247 4088 1 620 1159 203 9 0 chr5 4622377 4622599 -147914660 + URR1B DNA MER1_type 1 224 -1 1 620 216 0 0 0 chr5 4622964 4622988 -147914271 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 1 620 252 167 0 0 chr5 4622988 4623036 -147914223 + CT-rich Low_complexity Low_complexity 1 48 0 1 620 21 0 0 0 chr5 4623996 4624017 -147913242 + AT_rich Low_complexity Low_complexity 1 21 0 1 620 270 0 0 0 chr5 4625273 4625303 -147911956 + (T)n Simple_repeat Simple_repeat 1 30 0 1 620 254 369 90 0 chr5 4626508 4626619 -147910640 - MIRb SINE MIR -127 141 21 1 620 229 317 149 40 chr5 4626698 4626846 -147910413 + MIRc SINE MIR 99 262 -6 1 620 1010 203 40 10 chr5 4628098 4628297 -147908962 - B3 SINE B2 -5 211 7 1 620 386 94 16 0 chr5 4628814 4628878 -147908381 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 620 607 232 186 25 chr5 4629468 4629667 -147907592 - B4A SINE B4 -60 232 2 1 620 234 290 0 0 chr5 4630056 4630125 -147907134 - MER5A1 DNA MER1_type -20 146 78 1 620 644 259 12 41 chr5 4630449 4630592 -147906667 + RSINE1 SINE B4 2 140 -25 1 620 360 0 0 0 chr5 4630592 4630632 -147906627 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 620 644 259 12 41 chr5 4630632 4630657 -147906602 + RSINE1 SINE B4 141 165 0 1 620 210 171 0 0 chr5 4630660 4630701 -147906558 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1 620 365 312 36 8 chr5 4631195 4631447 -147905812 + L1MD LINE L1 4459 4717 -1429 1 620 611 185 19 0 chr5 4631483 4631591 -147905668 + B1_Mur2 SINE Alu 31 140 -9 1 620 273 179 0 0 chr5 4631612 4631696 -147905563 + GA-rich Low_complexity Low_complexity 1 84 0 1 620 366 23 0 0 chr5 4631912 4631955 -147905304 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 620 302 234 13 0 chr5 4632342 4632419 -147904840 - B1_Mur2 SINE Alu 0 149 72 1 620 545 344 55 48 chr5 4633027 4633461 -147903798 - MTE-int LTR MaLR -570 1010 574 1 620 1035 344 62 5 chr5 4633491 4633926 -147903333 - MTE-int LTR MaLR -1116 464 5 1 620 312 158 26 129 chr5 4634099 4634215 -147903044 + RLTR10-int LTR ERVK 749 852 -1135 1 620 540 168 16 25 chr5 4634276 4634301 -147902958 + RLTR10-int LTR ERVK 57 83 -6459 1 620 927 0 0 0 chr5 4634301 4634404 -147902855 + (TC)n Simple_repeat Simple_repeat 2 104 0 1 620 540 168 16 25 chr5 4634404 4634500 -147902759 + RLTR10-int LTR ERVK 84 176 -6366 1 620 769 179 6 6 chr5 4634494 4634651 -147902608 + RLTR10-int LTR ERVK 347 503 -6039 1 620 1956 53 86 10 chr5 4634651 4635135 -147902124 + RLTR10-int LTR ERVK 5007 5527 -1015 1 620 4682 96 23 8 chr5 4635147 4635877 -147901382 + RLTR10-int LTR ERVK 1288 1986 -1 1 620 2049 67 10 8 chr5 4635877 4636256 -147901003 + RLTR10A LTR ERVK 1 309 0 1 620 1349 181 32 68 chr5 4636256 4636540 -147900719 + RMER4A LTR ERVK 182 454 -12 1 620 3816 231 45 15 chr5 4636630 4637736 -147899523 + ORR1D1-int LTR MaLR 1 1192 -178 1 620 2644 83 0 14 chr5 4637737 4638102 -147899157 - L1_Mus1 LINE L1 -3 6564 6205 1 620 402 289 151 44 chr5 4638135 4638523 -147898736 - L1MEf LINE L1 -4065 2350 1904 1 620 523 294 125 87 chr5 4639979 4640314 -147896945 - ORR1E LTR MaLR -5 354 7 1 620 420 266 103 85 chr5 4640363 4640634 -147896625 - L1MEf LINE L1 -4857 1558 1283 1 620 279 293 73 0 chr5 4641409 4641532 -147895727 + L1MA9 LINE L1 5999 6130 -182 1 620 1626 194 35 42 chr5 4641640 4642017 -147895242 + ORR1D1 LTR MaLR 1 374 0 1 620 207 0 0 0 chr5 4642637 4642660 -147894599 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 620 370 313 155 76 chr5 4643418 4643785 -147893474 + MLT1A1 LTR MaLR 5 400 -8 1 620 215 169 22 33 chr5 4644369 4644461 -147892798 + T-rich Low_complexity Low_complexity 2 92 0 1 620 412 319 74 12 chr5 4645665 4645909 -147891350 - L1MEe LINE L1 -3177 2969 2711 1 620 1063 266 0 23 chr5 4646500 4646762 -147890497 + Lx6 LINE L1 7145 7400 -60 1 620 239 235 0 39 chr5 4646763 4646865 -147890394 + Lx6 LINE L1 7343 7440 -20 1 620 406 308 81 43 chr5 4646870 4646928 -147890331 - L1MEe LINE L1 -4452 1714 1656 1 620 1383 183 203 0 chr5 4646928 4647239 -147890020 - ORR1D1 LTR MaLR 0 374 1 1 620 406 308 81 43 chr5 4647239 4647414 -147889845 - L1MEe LINE L1 -4511 1655 1472 1 620 296 192 0 27 chr5 4647971 4648007 -147889252 + polypyrimidine Low_complexity Low_complexity 39 73 0 1 620 420 55 0 0 chr5 4648007 4648062 -147889197 + (CTCA)n Simple_repeat Simple_repeat 2 56 0 1 620 296 192 0 27 chr5 4648062 4648100 -147889159 + polypyrimidine Low_complexity Low_complexity 1 38 0 1 620 752 305 44 40 chr5 4648242 4648515 -147888744 - MLT1A0 LTR MaLR -62 303 30 1 620 634 305 6 6 chr5 4648529 4648694 -147888565 - RSINE1 SINE B4 0 165 1 1 620 447 19 0 0 chr5 4649054 4649106 -147888153 + (CTTA)n Simple_repeat Simple_repeat 1 52 0 1 620 508 274 121 108 chr5 4649172 4649314 -147887945 + L1ME3A LINE L1 5525 5632 -541 1 620 369 0 0 0 chr5 4649314 4649355 -147887904 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 620 508 274 121 108 chr5 4649355 4649776 -147887483 + L1ME3A LINE L1 5633 6094 -79 1 620 267 178 135 14 chr5 4650720 4650794 -147886465 - MLT1A0 LTR MaLR -19 486 404 1 620 288 343 98 29 chr5 4650814 4650988 -147886271 - MLT1A0 LTR MaLR -154 211 26 1 620 309 228 78 9 chr5 4651449 4651564 -147885695 + L1MB8 LINE L1 6005 6127 -51 1 620 1766 90 75 0 chr5 4652411 4652679 -147884580 - Lx2 LINE L1 0 6997 6710 1 620 396 238 9 0 chr5 4652689 4652794 -147884465 - L1MA4 LINE L1 -409 5891 5786 1 620 1879 95 4 0 chr5 4653702 4653964 -147883295 + L1_Mus4 LINE L1 6367 6629 -7 2 620 624 27 0 0 chr5 4653976 4654050 -147883209 + (GA)n Simple_repeat Simple_repeat 2 75 0 2 620 855 29 0 0 chr5 4654050 4654152 -147883107 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 2 620 615 293 71 11 chr5 4654731 4654997 -147882262 - B4A SINE B4 -10 282 1 2 620 2635 47 9 14 chr5 4655077 4655423 -147881836 + L1_Mus3 LINE L1 6288 6631 -7 2 620 493 222 15 0 chr5 4655538 4655673 -147881586 + GA-rich Low_complexity Low_complexity 2 138 0 2 620 355 216 93 13 chr5 4656202 4656277 -147880982 + RSINE1 SINE B4 8 88 -77 2 620 735 339 65 0 chr5 4656319 4656567 -147880692 + B4A SINE B4 25 288 -4 2 620 462 82 0 0 chr5 4656856 4656917 -147880342 + RMER6D LTR ERVK 1 61 -659 2 620 1667 186 24 66 chr5 4656941 4657350 -147879909 + RMER6D LTR ERVK 317 708 -12 2 620 311 326 97 97 chr5 4657588 4657958 -147879301 - ORR1D2 LTR MaLR 0 370 1 2 620 327 327 65 32 chr5 4658082 4658237 -147879022 + MLT1J1 LTR MaLR 156 315 -129 2 620 428 275 13 13 chr5 4658403 4658554 -147878705 + L1MA9 LINE L1 5509 5659 -653 2 620 280 240 50 0 chr5 4658585 4658706 -147878553 + (TA)n Simple_repeat Simple_repeat 2 128 0 2 620 614 322 94 0 chr5 4658765 4659010 -147878249 + B4A SINE B4 1 268 -24 2 620 376 162 8 16 chr5 4659090 4659177 -147878082 + L1MA9 LINE L1 5821 5905 -273 2 620 505 171 27 0 chr5 4659209 4659320 -147877939 + (TATG)n Simple_repeat Simple_repeat 3 116 0 2 620 613 281 84 23 chr5 4659325 4659668 -147877591 + L1MA9 LINE L1 5939 6302 -10 2 620 259 270 63 63 chr5 4659706 4659801 -147877458 + MLT1B LTR MaLR 1 95 -295 2 620 552 192 55 55 chr5 4659802 4659929 -147877330 + B1_Mur4 SINE Alu 19 145 -5 2 620 969 57 0 0 chr5 4659935 4660059 -147877200 + (GGGA)n Simple_repeat Simple_repeat 3 126 0 2 620 411 336 111 7 chr5 4660079 4660349 -147876910 + MLT1B LTR MaLR 89 386 -4 2 620 470 318 45 38 chr5 4661014 4661302 -147875957 + B4A SINE B4 3 292 0 2 620 195 100 0 0 chr5 4662824 4662854 -147874405 + (TCTCTG)n Simple_repeat Simple_repeat 1 30 0 2 620 254 239 0 27 chr5 4663275 4663348 -147873911 + T-rich Low_complexity Low_complexity 5 75 0 2 620 21 0 0 0 chr5 4663372 4663393 -147873866 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 423 0 0 0 chr5 4663416 4663463 -147873796 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 620 225 0 0 0 chr5 4665926 4665951 -147871308 + (A)n Simple_repeat Simple_repeat 1 25 0 2 620 454 171 77 33 chr5 4667047 4667228 -147870031 + RMER17C LTR ERVK 87 275 -135 2 620 288 370 46 11 chr5 4667586 4667867 -147869392 + L2 LINE L2 2475 2765 -654 2 620 493 312 343 44 chr5 4667977 4668269 -147868990 - MTEb LTR MaLR -2 377 1 2 620 271 355 85 57 chr5 4668269 4668445 -147868814 - MLT1C LTR MaLR -87 380 200 2 620 27 0 0 0 chr5 4668485 4668512 -147868747 + AT_rich Low_complexity Low_complexity 1 27 0 2 620 379 292 100 38 chr5 4668514 4668674 -147868585 + MLT1C LTR MaLR 48 217 -250 2 620 237 323 154 23 chr5 4668802 4668932 -147868327 + B1F SINE Alu 1 147 -2 2 620 22 0 0 0 chr5 4668932 4668954 -147868305 + AT_rich Low_complexity Low_complexity 1 22 0 2 620 217 198 0 24 chr5 4669066 4669149 -147868110 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 620 243 0 0 0 chr5 4669171 4669198 -147868061 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 620 523 245 104 25 chr5 4669246 4669409 -147867850 - MLT1C-int LTR MaLR -238 1133 958 2 620 259 319 28 69 chr5 4671818 4671963 -147865296 - LTR88b LTR Gypsy? -439 398 260 2 620 476 211 14 86 chr5 4672247 4672387 -147864872 - Lx9 LINE L1 -550 7094 6965 2 620 1394 238 19 11 chr5 4672385 4672759 -147864500 + Lx9 LINE L1 7107 7483 -161 2 620 646 323 78 59 chr5 4672847 4673169 -147864090 - MLT1A LTR MaLR -46 328 1 2 620 26 0 0 0 chr5 4673291 4673317 -147863942 + AT_rich Low_complexity Low_complexity 1 26 0 2 620 358 296 47 31 chr5 4673420 4673549 -147863710 - MER20 DNA MER1_type -4 215 85 2 620 396 292 33 8 chr5 4674751 4674872 -147862387 - MLT1A1 LTR MaLR -269 139 16 2 620 532 72 41 0 chr5 4675922 4676019 -147861240 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 2 620 204 250 0 0 chr5 4676047 4676087 -147861172 + L2b LINE L2 3317 3356 -19 2 620 2819 113 56 5 chr5 4677201 4677645 -147859614 + Lx2 LINE L1 6531 6997 0 2 620 234 303 92 0 chr5 4677814 4677966 -147859293 + Lx9 LINE L1 5810 5975 -1669 2 620 543 16 0 0 chr5 4677999 4678063 -147859196 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 620 429 20 0 0 chr5 4678063 4678112 -147859147 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 620 7388 72 7 6 chr5 4678131 4679768 -147857491 + L1_Mus1 LINE L1 4923 6566 -1 2 620 1694 317 56 22 chr5 4679790 4680600 -147856659 + Lx8 LINE L1 6196 7032 -441 2 620 340 154 0 0 chr5 4680602 4680654 -147856605 - MTE2b LTR MaLR -46 333 282 2 620 610 205 109 71 chr5 4680655 4680839 -147856420 - MT2A LTR ERVL 0 533 343 2 620 1717 323 74 88 chr5 4680842 4681894 -147855365 - MTE2b-int LTR MaLR -332 1038 2 2 620 1321 282 65 33 chr5 4681896 4682263 -147854996 - MTE2b LTR MaLR 0 379 1 2 620 952 294 70 38 chr5 4682313 4682628 -147854631 + MER2 DNA MER2_type 21 345 0 2 620 21 0 0 0 chr5 4682643 4682664 -147854595 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 927 109 23 11 chr5 4683072 4683248 -147854011 + (TTCTC)n Simple_repeat Simple_repeat 2 179 0 2 620 551 16 0 0 chr5 4683248 4683311 -147853948 + (TTC)n Simple_repeat Simple_repeat 3 65 0 2 620 576 0 0 0 chr5 4683311 4683375 -147853884 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 620 190 206 147 0 chr5 4684277 4684345 -147852914 - MIR3 SINE MIR -33 175 98 2 620 1184 42 7 0 chr5 4684884 4685026 -147852233 + B1_Mus1 SINE Alu 5 147 -1 2 620 23 0 0 0 chr5 4685352 4685375 -147851884 + AT_rich Low_complexity Low_complexity 1 23 0 2 620 219 69 0 0 chr5 4686868 4686897 -147850362 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2 620 201 386 0 0 chr5 4687838 4687908 -147849351 + MIRm SINE MIR 205 274 -2 2 620 235 302 49 92 chr5 4688214 4688356 -147848903 - MIRc SINE MIR -114 154 19 2 620 2293 135 213 24 chr5 4689854 4690346 -147846913 - RMER4B LTR ERVK 0 585 1 2 620 707 273 65 28 chr5 4690609 4690824 -147846435 + ID_B1 SINE B4 2 224 0 2 620 2349 204 63 24 chr5 4690840 4691381 -147845878 - RLTR20B1 LTR ERVK -1 562 1 2 620 450 0 0 0 chr5 4691532 4691582 -147845677 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 620 790 307 35 10 chr5 4691608 4692081 -147845178 - L1M2 LINE L1 -558 5739 5260 2 620 288 301 101 28 chr5 4692281 4692519 -147844740 - L1M2 LINE L1 -1099 5044 4744 2 620 512 300 18 36 chr5 4693332 4693498 -147843761 + RSINE1 SINE B4 3 165 0 2 620 189 0 0 0 chr5 4693977 4693998 -147843261 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 620 24 32 0 0 chr5 4694018 4694049 -147843210 + AT_rich Low_complexity Low_complexity 1 31 0 2 620 287 284 0 51 chr5 4694059 4694137 -147843122 + ID SINE ID 1 74 -150 2 620 23 33 0 0 chr5 4694471 4694501 -147842758 + AT_rich Low_complexity Low_complexity 1 30 0 2 620 7050 70 11 16 chr5 4694507 4695733 -147841526 - L1_Mus1 LINE L1 0 6567 5345 2 620 2284 203 28 182 chr5 4695731 4696860 -147840399 - L1_Rod LINE L1 -64 5783 4830 2 620 1425 210 36 30 chr5 4696862 4697255 -147840004 - L1_Rod LINE L1 -1723 4124 3730 2 620 468 319 46 23 chr5 4697311 4697484 -147839775 + MLT1G LTR MaLR 409 585 -6 2 620 467 283 133 39 chr5 4698193 4698214 -147839045 - B3A SINE B2 0 198 179 2 620 206 62 31 0 chr5 4698214 4698246 -147839013 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 620 467 283 133 39 chr5 4698246 4698404 -147838855 - B3A SINE B2 -20 178 2 2 620 276 149 0 0 chr5 4698570 4698617 -147838642 + (GGA)n Simple_repeat Simple_repeat 2 48 0 2 620 1914 216 69 73 chr5 4698622 4699398 -147837861 - L1Md_F LINE L1 -5791 728 1 2 620 224 419 0 0 chr5 4699526 4699619 -147837640 - L2a LINE L2 -18 3408 3316 2 620 525 58 0 0 chr5 4700050 4700119 -147837140 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 620 317 343 53 56 chr5 4700174 4700440 -147836819 + L1M5 LINE L1 5433 5697 -427 2 620 225 332 52 117 chr5 4700748 4701072 -147836187 - MLT1K LTR MaLR -47 548 246 2 620 199 232 0 24 chr5 4701368 4701452 -147835807 + CT-rich Low_complexity Low_complexity 2 83 0 2 620 1647 316 104 18 chr5 4701902 4702530 -147834729 + ORR1E-int LTR MaLR 844 1527 -53 2 620 529 312 55 62 chr5 4702530 4702663 -147834596 + ORR1E LTR MaLR 1 132 -227 2 620 3138 48 5 10 chr5 4702663 4703061 -147834198 + MTA_Mm LTR MaLR 1 396 0 2 620 529 323 49 89 chr5 4703061 4703319 -147833940 + ORR1E LTR MaLR 125 365 -9 2 620 6813 25 18 1 chr5 4703510 4704300 -147832959 - RLTR13B4 LTR ERVK 0 803 1 2 620 296 217 83 0 chr5 4704753 4704813 -147832446 + ID_B1 SINE B4 83 147 -77 2 620 787 333 75 6 chr5 4704837 4705303 -147831956 + Lx8 LINE L1 6788 7285 -188 2 620 592 190 12 12 chr5 4705538 4705552 -147831707 + (TATATG)n Simple_repeat Simple_repeat 3 16 0 2 620 3247 31 13 8 chr5 4705552 4705946 -147831313 - MTA_Mm LTR MaLR 0 396 1 2 620 592 190 12 12 chr5 4705946 4706096 -147831163 + (TATATG)n Simple_repeat Simple_repeat 3 152 0 2 620 189 0 0 0 chr5 4706106 4706127 -147831132 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 2 620 1082 250 84 54 chr5 4706479 4707109 -147830150 - L1M4c LINE L1 -3218 3164 2516 2 620 570 317 73 75 chr5 4707112 4707470 -147829789 - ORR1E LTR MaLR -2 357 1 2 620 799 185 157 11 chr5 4707576 4707844 -147829415 - Lx9 LINE L1 -1 7643 7337 2 620 508 196 0 0 chr5 4707988 4708090 -147829169 - Lx9 LINE L1 -302 7342 7241 2 620 818 196 12 6 chr5 4708089 4708258 -147829001 + Lx9 LINE L1 6976 7145 -499 2 620 952 74 89 0 chr5 4708258 4708393 -147828866 + B1_Mm SINE Alu 1 147 0 2 620 240 59 0 0 chr5 4708436 4708470 -147828789 + (CAA)n Simple_repeat Simple_repeat 1 34 0 2 620 1273 69 10 78 chr5 4708472 4708633 -147828626 + B2_Mm2 SINE B2 2 157 -38 2 620 290 67 22 0 chr5 4708633 4708678 -147828581 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 3 620 1273 69 10 78 chr5 4708678 4708720 -147828539 + B2_Mm2 SINE B2 158 191 -4 2 620 309 242 121 0 chr5 4708720 4708819 -147828440 + Lx9 LINE L1 7137 7247 -397 2 620 390 328 81 19 chr5 4708819 4709142 -147828117 - L1M4c LINE L1 -3961 2423 2081 2 620 307 282 22 140 chr5 4709828 4709964 -147827295 + MIRb SINE MIR 19 138 -130 3 620 23 0 0 0 chr5 4710499 4710522 -147826737 + AT_rich Low_complexity Low_complexity 1 23 0 3 620 2006 132 26 10 chr5 4711447 4711754 -147825505 + ORR1A2 LTR MaLR 16 327 0 3 620 311 250 0 45 chr5 4712073 4712161 -147825098 - MLT1H2 LTR MaLR -335 154 71 3 620 297 70 0 0 chr5 4713550 4713593 -147823666 + RLTR1B LTR ERV1 1 43 -469 3 620 3370 101 11 55 chr5 4713591 4714117 -147823142 + RLTR1B LTR ERV1 10 512 0 3 620 4891 132 113 73 chr5 4714197 4714778 -147822481 + RLTR25A LTR ERVK 1 681 -422 3 620 4412 29 0 4 chr5 4714778 4715290 -147821969 + L1Md_F2 LINE L1 6054 6563 -19 3 620 240 35 0 0 chr5 4715294 4715323 -147821936 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 3 620 4891 132 113 73 chr5 4715323 4715795 -147821464 + RLTR25A LTR ERVK 682 1098 -5 3 620 220 264 53 40 chr5 4716295 4716370 -147820889 + PB1D10 SINE Alu 2 77 -40 3 620 189 238 0 0 chr5 4716920 4716962 -147820297 + L4 LINE RTE 302 343 -1686 3 620 468 91 0 0 chr5 4717573 4717639 -147819620 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 620 820 164 11 0 chr5 4717640 4717817 -147819442 + CT-rich Low_complexity Low_complexity 1 179 0 3 620 315 0 0 0 chr5 4717817 4717852 -147819407 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 621 214 196 0 21 chr5 4718618 4718665 -147818594 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 621 27 0 0 0 chr5 4718701 4718728 -147818531 + AT_rich Low_complexity Low_complexity 1 27 0 3 621 192 291 17 104 chr5 4719151 4719266 -147817993 + L2 LINE L2 543 647 -2772 3 621 211 343 14 0 chr5 4719437 4719507 -147817752 - L2a LINE L2 -9 3417 3347 3 621 356 280 0 8 chr5 4719775 4719894 -147817365 - L1M2 LINE L1 -2652 3491 3374 3 621 270 261 24 38 chr5 4720087 4720225 -147817034 + L1M3 LINE L1 3529 3707 -2436 3 621 1564 135 54 41 chr5 4720232 4720526 -147816733 - RLTR23 LTR ERV1 -1 429 132 3 621 201 204 18 18 chr5 4720730 4720785 -147816474 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 3 621 246 32 0 0 chr5 4721466 4721497 -147815762 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 621 39 74 0 0 chr5 4721513 4721594 -147815665 + AT_rich Low_complexity Low_complexity 1 81 0 3 621 262 216 38 29 chr5 4721674 4721749 -147815510 + A-rich Low_complexity Low_complexity 4 78 0 3 621 231 36 0 0 chr5 4721749 4721777 -147815482 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 621 262 216 38 29 chr5 4721777 4721806 -147815453 + A-rich Low_complexity Low_complexity 79 109 0 3 621 385 247 22 0 chr5 4721818 4721907 -147815352 - Lx7 LINE L1 -398 7298 7208 3 621 291 54 0 0 chr5 4721965 4722002 -147815257 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 3 621 1919 253 23 11 chr5 4722015 4722455 -147814804 - Lx6 LINE L1 -184 7276 6832 3 621 237 83 0 0 chr5 4722466 4722502 -147814757 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 621 1224 48 0 7 chr5 4723224 4723372 -147813887 + B1_Mus2 SINE Alu 1 147 0 3 621 208 135 0 0 chr5 4723372 4723409 -147813850 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 3 621 1172 28 7 0 chr5 4723632 4723776 -147813483 + (CA)n Simple_repeat Simple_repeat 1 145 0 3 621 765 217 91 0 chr5 4724269 4724444 -147812815 - B3A SINE B2 0 198 8 3 621 198 361 31 0 chr5 4724510 4724607 -147812652 - MIR SINE MIR -122 140 41 3 621 39742 44 12 3 chr5 4724607 4730830 -147806429 - L1Md_T LINE L1 0 6582 343 3 621 564 280 15 67 chr5 4735131 4735326 -147801933 + B3A SINE B2 2 186 -12 3 621 297 250 71 0 chr5 4735699 4735783 -147801476 + MIR SINE MIR 64 153 -55 3 621 207 0 0 0 chr5 4736368 4736391 -147800868 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 621 349 198 149 10 chr5 4736406 4736504 -147800755 - B1F1 SINE Alu -45 104 2 3 621 185 351 0 0 chr5 4736540 4736614 -147800645 + MIRc SINE MIR 116 189 -79 3 621 195 309 35 23 chr5 4737397 4737483 -147799776 - MIRb SINE MIR -14 254 168 3 621 391 359 26 32 chr5 4737672 4737862 -147799397 + ORR1E LTR MaLR 3 191 -168 3 621 554 170 7 28 chr5 4737862 4738007 -147799252 + C-rich Low_complexity Low_complexity 5 146 0 3 621 453 273 86 28 chr5 4738115 4738475 -147798784 + Lx9 LINE L1 7055 7472 -172 3 621 2903 55 0 0 chr5 4738630 4738976 -147798283 + ORR1A1 LTR MaLR 1 346 0 3 621 21 0 0 0 chr5 4738996 4739017 -147798242 + AT_rich Low_complexity Low_complexity 1 21 0 3 621 21 57 0 0 chr5 4739468 4739503 -147797756 + AT_rich Low_complexity Low_complexity 1 35 0 3 621 353 280 40 0 chr5 4740107 4740207 -147797052 + MER94 DNA AcHobo 21 124 -10 3 621 855 29 0 0 chr5 4740221 4740323 -147796936 + (TC)n Simple_repeat Simple_repeat 1 102 0 3 621 306 0 0 0 chr5 4740323 4740356 -147796903 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 621 211 218 18 0 chr5 4741062 4741117 -147796142 + T-rich Low_complexity Low_complexity 1 56 0 3 621 198 296 129 30 chr5 4743196 4743297 -147793962 - L2b LINE L2 -46 3329 3219 3 621 342 107 0 0 chr5 4744093 4744149 -147793110 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 621 287 294 24 56 chr5 4744315 4744441 -147792818 - B4 SINE B4 -169 123 2 3 621 250 260 55 0 chr5 4744570 4744643 -147792616 + L1M4 LINE L1 5477 5553 -625 3 621 9075 4 0 0 chr5 4744665 4745650 -147791609 + L1Md_A LINE L1 5598 6582 0 3 621 426 20 0 0 chr5 4746991 4747042 -147790217 + (CATA)n Simple_repeat Simple_repeat 2 52 0 3 621 401 281 110 22 chr5 4748459 4748641 -147788618 + MLT1D LTR MaLR 306 503 -2 3 621 245 358 0 18 chr5 4749274 4749385 -147787874 + GA-rich Low_complexity Low_complexity 6 114 0 3 621 507 148 0 0 chr5 4749646 4749734 -147787525 + (GGA)n Simple_repeat Simple_repeat 3 90 0 3 621 283 303 112 24 chr5 4750763 4750888 -147786371 + MLT1A LTR MaLR 27 162 -212 3 621 22 35 0 0 chr5 4751026 4751055 -147786204 + AT_rich Low_complexity Low_complexity 1 29 0 3 621 423 0 0 0 chr5 4751777 4751824 -147785435 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 621 26 0 0 0 chr5 4753126 4753152 -147784107 + AT_rich Low_complexity Low_complexity 1 26 0 3 621 228 67 0 0 chr5 4753949 4753979 -147783280 + (TAA)n Simple_repeat Simple_repeat 2 31 0 3 621 280 302 0 5 chr5 4760021 4760093 -147777166 - PB1 SINE Alu -47 70 1 3 621 977 149 7 0 chr5 4761358 4761506 -147775753 + B1_Mur4 SINE Alu 1 149 -1 3 621 231 229 16 16 chr5 4762480 4762542 -147774717 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 621 231 114 0 0 chr5 4762543 4762578 -147774681 + (CATG)n Simple_repeat Simple_repeat 2 36 0 3 621 358 243 34 51 chr5 4762965 4763082 -147774177 - PB1D10 SINE Alu -2 115 1 3 621 1095 98 0 0 chr5 4763133 4763398 -147773861 + (TG)n Simple_repeat Simple_repeat 1 265 0 3 621 603 274 134 48 chr5 4763408 4763676 -147773583 - B4A SINE B4 -1 291 1 3 621 365 269 0 88 chr5 4764639 4764655 -147772604 + MT2B LTR ERVL 153 158 -443 3 621 607 117 17 35 chr5 4764655 4764770 -147772489 + B1_Mus2 SINE Alu 2 114 -33 3 621 299 183 0 12 chr5 4765568 4765651 -147771608 + GA-rich Low_complexity Low_complexity 2 83 0 3 621 198 0 0 0 chr5 4765794 4765816 -147771443 + (T)n Simple_repeat Simple_repeat 1 22 0 3 621 1801 227 32 25 chr5 4768756 4769170 -147768089 + MTD LTR MaLR 1 405 -14 3 621 297 0 0 0 chr5 4769437 4769470 -147767789 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 3 621 403 289 107 45 chr5 4770817 4771194 -147766065 + MLT1H2 LTR MaLR 23 422 -67 3 621 744 94 0 0 chr5 4771195 4771301 -147765958 + (TC)n Simple_repeat Simple_repeat 2 107 0 3 621 1189 88 44 6 chr5 4771301 4771483 -147765776 - B2_Mm2 SINE B2 0 195 7 3 621 491 262 0 0 chr5 4771745 4771848 -147765411 - PB1D10 SINE Alu -8 109 7 3 621 284 318 144 23 chr5 4772215 4772389 -147764870 - L1MC LINE L1 -2176 5706 5512 3 621 25 0 0 0 chr5 4772644 4772669 -147764590 + AT_rich Low_complexity Low_complexity 1 25 0 3 621 369 0 0 0 chr5 4772669 4772710 -147764549 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 621 246 105 0 0 chr5 4772958 4772996 -147764263 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 3 621 343 265 32 70 chr5 4773971 4774129 -147763130 + MIRc SINE MIR 62 213 -55 3 621 396 349 55 25 chr5 4774546 4774746 -147762513 + MIR SINE MIR 17 222 -40 3 621 1152 76 0 0 chr5 4774855 4775000 -147762259 + B1_Mus2 SINE Alu 1 145 -2 3 621 1080 106 0 16 chr5 4775003 4775185 -147762074 + (GAA)n Simple_repeat Simple_repeat 2 180 0 3 621 497 337 89 25 chr5 4776641 4776955 -147760304 - LTR16A1 LTR ERVL -115 341 8 3 621 294 95 0 0 chr5 4777009 4777051 -147760208 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 621 801 126 0 0 chr5 4777954 4778097 -147759162 + (TC)n Simple_repeat Simple_repeat 1 143 0 3 621 204 40 0 0 chr5 4778107 4778132 -147759127 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 621 279 0 0 0 chr5 4779938 4779969 -147757290 + (A)n Simple_repeat Simple_repeat 1 31 0 3 621 404 308 0 49 chr5 4780195 4780318 -147756941 - PB1D10 SINE Alu 0 117 1 3 621 207 351 92 26 chr5 4780572 4780724 -147756535 + L2b LINE L2 2659 2820 -599 3 621 357 62 0 0 chr5 4780999 4781047 -147756212 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 621 278 359 62 25 chr5 4783887 4784047 -147753212 + L2b LINE L2 3210 3375 0 3 621 321 26 0 0 chr5 4784135 4784173 -147753086 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 621 192 40 0 0 chr5 4784306 4784331 -147752928 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 621 612 321 62 27 chr5 4784372 4784631 -147752628 + B4A SINE B4 1 268 -24 4 621 213 119 47 23 chr5 4785578 4785621 -147751638 + (CATAT)n Simple_repeat Simple_repeat 2 45 0 4 621 207 69 0 0 chr5 4785974 4786003 -147751256 + (CAG)n Simple_repeat Simple_repeat 1 29 0 4 621 228 315 0 63 chr5 4787756 4787851 -147749408 + MLT1F1 LTR MaLR 23 111 -458 4 621 394 332 169 13 chr5 4787946 4788343 -147748916 + MLT1F1-int LTR MaLR 797 1255 -234 4 621 1405 264 49 13 chr5 4788467 4788858 -147748401 + MTD LTR MaLR 1 405 -14 4 621 240 319 93 46 chr5 4789220 4789371 -147747888 + MLT1F1 LTR MaLR 402 559 -10 4 621 209 286 0 0 chr5 4791165 4791214 -147746045 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 621 4391 73 2 10 chr5 4791869 4792452 -147744807 - L1Md_F2 LINE L1 0 6582 6005 4 621 916 133 143 2 chr5 4792487 4792687 -147744572 - ORR1B1 LTR MaLR 0 394 144 4 621 2156 101 6 66 chr5 4793065 4793415 -147743844 - ORR1A4 LTR MaLR 0 329 1 4 621 1101 253 107 18 chr5 4793682 4794020 -147743239 - ORR1D2 LTR MaLR -2 368 1 4 621 301 293 91 0 chr5 4794943 4795042 -147742217 + Zaphod DNA Tip100 3923 4030 -1 4 621 897 303 86 45 chr5 4795077 4795432 -147741827 + RCHARR1 DNA MER1_type 3 387 -587 4 621 664 248 92 5 chr5 4795432 4795627 -147741632 + B3 SINE B2 2 213 -3 4 621 897 303 86 45 chr5 4795627 4795762 -147741497 + RCHARR1 DNA MER1_type 388 513 -461 4 621 631 251 28 9 chr5 4795784 4795997 -147741262 + RCHARR1 DNA MER1_type 627 843 -131 4 621 463 301 16 0 chr5 4796027 4796150 -147741109 - RSINE1 SINE B4 0 165 41 4 621 1062 130 11 16 chr5 4796154 4796341 -147740918 - RMER19C LTR ERVK 0 611 426 4 621 1998 46 0 0 chr5 4796374 4796635 -147740624 + RLTR10A LTR ERVK 1 261 -150 4 621 945 84 0 8 chr5 4796622 4796754 -147740505 + RLTR27 LTR ERVK 179 309 0 4 621 359 99 7 10 chr5 4796778 4796834 -147740425 + RLTR10-int LTR ERVK 160 267 -7314 4 621 372 182 0 113 chr5 4796980 4797104 -147740155 + RLTR10-int LTR ERVK 743 852 -1135 4 621 541 13 77 0 chr5 4797104 4797182 -147740077 + (GGAAA)n Simple_repeat Simple_repeat 1 84 0 4 621 690 100 0 0 chr5 4797202 4797302 -147739957 + (TC)n Simple_repeat Simple_repeat 1 100 0 4 621 547 58 0 14 chr5 4797306 4797376 -147739883 + RLTR10-int LTR ERVK 105 173 -6369 4 621 729 179 82 7 chr5 4797373 4797519 -147739740 + RLTR10-int LTR ERVK 347 503 -6039 4 621 1839 72 100 0 chr5 4797519 4797770 -147739489 + RLTR10-int LTR ERVK 5007 5282 -1260 4 621 4895 108 23 14 chr5 4797778 4798513 -147738746 + RLTR10-int LTR ERVK 1288 1986 -1 4 621 1923 61 0 0 chr5 4798513 4798774 -147738485 + RLTR10A LTR ERVK 1 261 -150 4 621 924 102 7 0 chr5 4798755 4798892 -147738367 + RLTR27 LTR ERVK 172 309 0 4 621 1193 202 144 16 chr5 4798892 4799199 -147738060 - RMER19B LTR ERVK -247 655 309 4 621 4541 94 4 46 chr5 4799507 4800274 -147736985 + RMER17A LTR ERVK 1 735 -16 4 621 282 194 0 0 chr5 4800367 4800429 -147736830 + (TA)n Simple_repeat Simple_repeat 1 62 0 4 621 744 260 43 19 chr5 4800471 4800679 -147736580 - B3 SINE B2 0 216 4 4 621 244 279 145 14 chr5 4800931 4801069 -147736190 - MER5B DNA MER1_type -22 156 1 4 621 717 12 0 0 chr5 4802469 4802551 -147734708 + (CAG)n Simple_repeat Simple_repeat 1 82 0 4 621 216 158 0 0 chr5 4803637 4803675 -147733584 + A-rich Low_complexity Low_complexity 1 38 0 4 621 207 100 0 0 chr5 4803695 4803725 -147733534 + (T)n Simple_repeat Simple_repeat 1 30 0 4 621 1938 308 83 8 chr5 4807752 4808632 -147728627 - L1MB5 LINE L1 -8 6166 5213 4 621 2308 141 104 5 chr5 4808766 4809207 -147728052 + RLTR17 LTR ERVK 98 582 -110 4 621 607 289 45 64 chr5 4809599 4809942 -147727317 + RLTR17 LTR ERVK 60 426 -266 4 621 835 186 14 0 chr5 4813028 4813173 -147724086 + B1_Mus2 SINE Alu 1 147 0 4 621 794 123 0 8 chr5 4813173 4813304 -147723955 + (GGA)n Simple_repeat Simple_repeat 3 132 0 4 621 402 226 0 0 chr5 4814109 4814215 -147723044 + (TA)n Simple_repeat Simple_repeat 2 107 0 4 621 383 70 0 17 chr5 4815841 4815899 -147721360 - L1_Mm LINE L1 -4326 1557 1501 4 621 2908 67 25 18 chr5 4815901 4816296 -147720963 + L1Md_F2 LINE L1 6184 6581 -1 4 621 21 0 0 0 chr5 4816550 4816571 -147720688 + AT_rich Low_complexity Low_complexity 1 21 0 4 621 3922 41 11 2 chr5 4818066 4818535 -147718724 - L1_Mus1 LINE L1 0 6567 6095 4 621 2744 62 0 0 chr5 4818535 4818873 -147718386 + L1_Mus1 LINE L1 5787 6124 -443 4 621 221 280 0 0 chr5 4819525 4819575 -147717684 - B1F SINE Alu -91 58 9 4 621 356 61 0 70 chr5 4819594 4819665 -147717594 - L1Md_F2 LINE L1 0 6582 6517 4 621 346 272 0 58 chr5 4820144 4820265 -147716994 + B4A SINE B4 173 286 -6 4 621 1036 120 72 0 chr5 4820323 4820490 -147716769 + B2_Mm1t SINE B2 1 179 -14 4 621 238 182 0 0 chr5 4820528 4820572 -147716687 + B2_Mm2 SINE B2 58 101 -94 4 621 279 114 0 0 chr5 4820607 4820651 -147716608 + (A)n Simple_repeat Simple_repeat 1 44 0 4 621 888 111 0 0 chr5 4823347 4823482 -147713777 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 621 297 0 0 0 chr5 4824892 4824925 -147712334 + (TTG)n Simple_repeat Simple_repeat 1 33 0 4 621 537 16 0 0 chr5 4826498 4826560 -147710699 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 621 320 59 20 0 chr5 4826688 4826739 -147710520 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 4 621 306 274 24 57 chr5 4827228 4827352 -147709907 - MER44B DNA MER2_type -197 353 234 4 621 482 299 41 63 chr5 4827633 4827854 -147709405 + B4A SINE B4 1 216 -76 4 621 231 146 0 0 chr5 4827866 4827907 -147709352 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 621 261 0 0 0 chr5 4828466 4828495 -147708764 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 621 21 71 0 0 chr5 4828619 4828661 -147708598 + AT_rich Low_complexity Low_complexity 1 42 0 4 621 402 186 0 0 chr5 4828744 4828814 -147708445 + B1_Mur1 SINE Alu 68 137 -12 4 621 573 15 0 0 chr5 4828814 4828880 -147708379 + (GA)n Simple_repeat Simple_repeat 2 67 0 4 621 838 227 58 10 chr5 4829070 4829275 -147707984 + B3 SINE B2 2 216 0 4 621 578 273 0 12 chr5 4829297 4829460 -147707799 + L1M3 LINE L1 3911 4071 -2069 4 621 241 271 17 0 chr5 4829533 4829592 -147707667 + ID4 SINE ID 15 74 -9 4 621 266 320 90 0 chr5 4829705 4829805 -147707454 - Tigger7 DNA MER2_type -7 2484 2376 4 621 198 167 16 32 chr5 4829806 4829868 -147707391 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 621 608 332 37 28 chr5 4830022 4830344 -147706915 - Tigger7 DNA MER2_type -2139 352 32 4 621 21 0 0 0 chr5 4830407 4830428 -147706831 + AT_rich Low_complexity Low_complexity 1 21 0 4 621 557 283 19 26 chr5 4830452 4830608 -147706651 + RSINE1 SINE B4 3 157 -8 4 621 296 341 58 27 chr5 4830638 4830861 -147706398 - Charlie2b DNA MER1_type -462 2320 2091 4 621 2356 73 11 66 chr5 4831398 4831764 -147705495 - Lx3_Mus LINE L1 -892 6117 5772 4 621 6333 64 30 23 chr5 4831764 4832646 -147704613 + Lx3_Mus LINE L1 6122 7009 0 4 621 21 0 0 0 chr5 4833459 4833480 -147703779 + AT_rich Low_complexity Low_complexity 1 21 0 4 621 274 253 13 26 chr5 4833739 4833816 -147703443 + ID_B1 SINE B4 135 210 -14 4 621 405 0 0 0 chr5 4833852 4833897 -147703362 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 621 225 214 0 0 chr5 4834620 4834662 -147702597 - PB1D7 SINE Alu 0 120 79 4 621 27 49 0 0 chr5 4835646 4835687 -147701572 + AT_rich Low_complexity Low_complexity 1 41 0 4 621 315 137 27 14 chr5 4835722 4835796 -147701463 + (TATG)n Simple_repeat Simple_repeat 2 76 0 4 621 451 239 33 0 chr5 4836070 4836162 -147701097 - PB1D10 SINE Alu -1 116 22 4 621 206 0 0 65 chr5 4836529 4836560 -147700699 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 621 1469 279 69 47 chr5 4837169 4838382 -147698877 - L1MA7 LINE L1 -106 6185 4842 4 621 673 256 19 31 chr5 4838382 4838543 -147698716 + RSINE1 SINE B4 5 163 -2 4 621 1451 278 46 81 chr5 4838543 4838680 -147698579 - L1MA7 LINE L1 -1294 4849 4734 4 621 537 258 86 70 chr5 4838783 4839247 -147698012 - L1MA7 LINE L1 -1388 4755 4250 4 621 2104 174 225 0 chr5 4839259 4839695 -147697564 - Lx5 LINE L1 -1 7049 6516 4 621 2117 171 14 156 chr5 4839694 4839729 -147697530 + Lx5 LINE L1 5403 5437 -440 4 621 276 30 0 0 chr5 4839729 4839762 -147697497 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 4 621 2117 171 14 156 chr5 4839762 4840058 -147697201 + Lx5 LINE L1 5438 5729 -148 4 621 4803 70 10 3 chr5 4840058 4840656 -147696603 - L1_Mus1 LINE L1 0 6567 5966 4 621 2601 179 32 70 chr5 4840656 4841285 -147695974 + Lx5 LINE L1 5730 6303 -747 4 621 244 258 194 8 chr5 4841294 4841423 -147695836 - L1MA7 LINE L1 -1887 4253 4101 4 621 1027 91 1 5 chr5 4842139 4842300 -147694959 - L1Md_F2 LINE L1 -322 6245 6088 4 621 2933 69 0 14 chr5 4842300 4842666 -147694593 + L1Md_F2 LINE L1 6210 6570 -12 4 621 343 254 81 44 chr5 4842926 4843062 -147694197 + B1F SINE Alu 1 141 -8 4 621 232 307 67 20 chr5 4843078 4843179 -147694080 - MIRm SINE MIR -140 136 32 4 621 3300 55 3 0 chr5 4844448 4844831 -147692428 + L1_Mus1 LINE L1 6183 6566 -1 4 621 256 263 295 0 chr5 4845074 4845264 -147691995 + L1MA7 LINE L1 6039 6284 -7 4 621 4872 65 28 2 chr5 4845507 4846109 -147691150 + L1_Mus1 LINE L1 5950 6567 0 4 621 22 0 0 0 chr5 4846109 4846131 -147691128 + AT_rich Low_complexity Low_complexity 1 22 0 4 621 317 347 39 45 chr5 4846515 4846669 -147690590 - MIR SINE MIR -2 260 108 4 621 260 316 142 19 chr5 4846814 4846969 -147690290 + ORR1E LTR MaLR 79 252 -107 4 621 509 252 24 40 chr5 4848160 4848284 -147688975 + RSINE1 SINE B4 3 124 -41 4 621 414 0 0 0 chr5 4848284 4848330 -147688929 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 621 661 308 0 19 chr5 4848438 4848597 -147688662 - RSINE1 SINE B4 -2 163 8 4 622 689 243 27 20 chr5 4850135 4850282 -147686977 + B4 SINE B4 145 292 0 4 622 299 338 32 70 chr5 4850742 4850898 -147686361 - MIRb SINE MIR -83 185 36 4 622 185 226 0 19 chr5 4852241 4852295 -147684964 + CT-rich Low_complexity Low_complexity 4 56 0 4 622 339 85 0 0 chr5 4854315 4854362 -147682897 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 622 276 30 0 0 chr5 4854362 4854394 -147682865 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 622 2003 197 87 26 chr5 4856100 4856559 -147680700 - RMER5 LTR ERV1 -26 508 22 4 622 1285 35 0 0 chr5 4856766 4856908 -147680351 - B1_Mus2 SINE Alu -5 142 1 5 622 275 0 0 28 chr5 4857951 4857987 -147679272 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 5 622 374 186 12 0 chr5 4859462 4859548 -147677711 + (TAG)n Simple_repeat Simple_repeat 1 87 0 5 622 278 279 38 19 chr5 4860235 4860341 -147676918 + CR1_Mam LINE CR1 1248 1355 -849 5 622 249 33 0 0 chr5 4860489 4860519 -147676740 + (TC)n Simple_repeat Simple_repeat 1 30 0 5 622 218 56 28 0 chr5 4860519 4860554 -147676705 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 622 31 26 0 0 chr5 4861972 4862010 -147675249 + AT_rich Low_complexity Low_complexity 1 38 0 5 622 393 270 0 0 chr5 4862979 4863068 -147674191 + BC1_Mm scRNA scRNA 2 90 -62 5 622 188 95 0 67 chr5 4864965 4865010 -147672249 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 5 622 347 317 44 97 chr5 4865079 4865327 -147671932 - MIRb SINE MIR -12 256 22 5 622 348 152 0 0 chr5 4865927 4865993 -147671266 + GA-rich Low_complexity Low_complexity 1 66 0 5 622 250 309 130 0 chr5 4866138 4866261 -147670998 - Charlie15a DNA MER1_type -34 190 52 5 622 387 0 0 0 chr5 4866398 4866441 -147670818 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 622 987 125 17 6 chr5 4866538 4866715 -147670544 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 622 216 0 0 0 chr5 4866722 4866746 -147670513 + (TTG)n Simple_repeat Simple_repeat 1 24 0 5 622 180 0 0 0 chr5 4866770 4866790 -147670469 + (T)n Simple_repeat Simple_repeat 1 20 0 5 622 1272 48 0 0 chr5 4866790 4866936 -147670323 - B1_Mus2 SINE Alu 0 147 2 5 622 201 94 0 0 chr5 4868402 4868434 -147668825 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 622 245 243 27 0 chr5 4870990 4871055 -147666204 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 622 879 37 0 0 chr5 4871055 4871162 -147666097 + (GA)n Simple_repeat Simple_repeat 2 108 0 5 622 245 243 27 0 chr5 4871162 4871170 -147666089 + (CA)n Simple_repeat Simple_repeat 2 9 0 5 622 838 313 114 28 chr5 4871837 4872274 -147664985 + Lx8 LINE L1 6996 7470 -3 5 622 213 39 0 0 chr5 4872671 4872697 -147664562 + (TAA)n Simple_repeat Simple_repeat 3 28 0 5 622 490 294 161 10 chr5 4872748 4873133 -147664126 + L1MD3 LINE L1 7553 7995 0 5 622 832 230 0 0 chr5 4873144 4873292 -147663967 + B1_Mur3 SINE Alu 1 148 -1 5 622 384 247 0 0 chr5 4873781 4873862 -147663397 + Lx8 LINE L1 7032 7112 -361 5 622 211 281 62 0 chr5 4873894 4873958 -147663301 + B1F2 SINE Alu 14 81 -68 5 622 207 204 0 0 chr5 4873979 4874023 -147663236 + A-rich Low_complexity Low_complexity 1 44 0 5 622 463 305 25 50 chr5 4874079 4874279 -147662980 - Charlie1a DNA MER1_type -277 1178 984 5 622 581 268 109 104 chr5 4874318 4874702 -147662557 - Charlie1a DNA MER1_type -698 757 372 5 622 1013 97 17 17 chr5 4875343 4875522 -147661737 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 5 622 570 63 21 21 chr5 4875553 4875650 -147661609 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 5 622 264 77 0 0 chr5 4875682 4875721 -147661538 + (A)n Simple_repeat Simple_repeat 1 39 0 5 622 345 24 0 0 chr5 4878661 4878703 -147658556 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 622 365 39 20 0 chr5 4879560 4879611 -147657648 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 622 2894 90 57 24 chr5 4881020 4881475 -147655784 + RMER16 LTR ERVK 64 533 0 5 622 465 280 139 8 chr5 4882623 4882868 -147654391 - Lx9 LINE L1 -32 7612 7336 5 622 1266 81 41 46 chr5 4883385 4883579 -147653680 - B2_Mm2 SINE B2 0 195 3 5 622 203 161 0 0 chr5 4883839 4883870 -147653389 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 622 233 0 0 59 chr5 4883954 4883988 -147653271 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5 622 6732 115 36 9 chr5 4883988 4885500 -147651759 - Lx LINE L1 -33 6621 5073 5 622 243 0 0 0 chr5 4887525 4887552 -147649707 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 622 525 274 97 97 chr5 4887554 4887760 -147649499 + B4 SINE B4 86 291 -1 5 622 682 245 7 0 chr5 4887871 4888014 -147649245 + B1_Mus1 SINE Alu 5 148 0 5 622 236 53 26 0 chr5 4888019 4888057 -147649202 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 5 622 420 315 85 18 chr5 4888367 4888532 -147648727 - MER102b DNA MER1_type -147 194 19 5 622 375 154 0 0 chr5 4889145 4889210 -147648049 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 622 21 0 0 0 chr5 4889288 4889309 -147647950 + AT_rich Low_complexity Low_complexity 1 21 0 5 622 1107 148 16 11 chr5 4889321 4889505 -147647754 - B2_Mm2 SINE B2 -8 187 3 5 622 259 324 126 64 chr5 4889535 4889971 -147647288 - L2 LINE L2 -913 2506 2044 5 622 388 239 0 74 chr5 4890082 4890204 -147647055 + PB1D9 SINE Alu 7 119 -1 5 622 261 264 140 61 chr5 4890942 4891156 -147646103 + MER54A LTR ERVL 20 250 -651 5 622 622 299 71 25 chr5 4891169 4891450 -147645809 + MLT1A LTR MaLR 81 374 0 5 622 679 52 10 10 chr5 4893789 4893886 -147643373 + (TC)n Simple_repeat Simple_repeat 1 97 0 5 622 217 159 23 0 chr5 4893886 4893930 -147643329 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 622 24 0 0 0 chr5 4894648 4894672 -147642587 + AT_rich Low_complexity Low_complexity 1 24 0 5 622 484 293 7 26 chr5 4895968 4896119 -147641140 - B1F SINE Alu -1 148 1 5 622 292 257 48 16 chr5 4896907 4897042 -147640217 - L1MEf LINE L1 -3867 2348 2213 5 622 459 246 50 50 chr5 4897708 4897828 -147639431 + PB1D9 SINE Alu 1 120 0 5 622 225 0 0 0 chr5 4897880 4897905 -147639354 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 622 940 224 38 24 chr5 4899032 4899325 -147637934 - Lx5 LINE L1 -68 6908 6620 5 622 252 0 0 0 chr5 4900432 4900460 -147636799 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 5 622 1514 102 2 13 chr5 4900542 4900768 -147636491 - L1_Mus4 LINE L1 -350 5950 5708 5 622 243 0 0 0 chr5 4900842 4900869 -147636390 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 622 3250 88 40 99 chr5 4901519 4902114 -147635145 - Lx3_Mus LINE L1 -579 6430 5871 5 622 3449 80 53 0 chr5 4902116 4902602 -147634657 + Lx3_Mus LINE L1 6493 7004 -5 5 622 7352 76 9 5 chr5 4903647 4905333 -147631926 + L1_Mus1 LINE L1 4468 6565 -2 5 622 212 175 0 0 chr5 4905341 4905381 -147631878 + A-rich Low_complexity Low_complexity 1 40 0 5 622 222 214 0 0 chr5 4905475 4905517 -147631742 + GA-rich Low_complexity Low_complexity 3 44 0 5 622 379 323 16 24 chr5 4905590 4905717 -147631542 + B3 SINE B2 38 163 -53 5 622 219 139 0 0 chr5 4905717 4905753 -147631506 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 622 37 23 0 0 chr5 4905788 4905832 -147631427 + AT_rich Low_complexity Low_complexity 1 44 0 5 622 187 231 0 0 chr5 4906103 4906142 -147631117 - MIRc SINE MIR -117 151 113 5 622 281 277 0 0 chr5 4907593 4907658 -147629601 - RSINE1 SINE B4 -33 132 68 5 622 964 179 122 15 chr5 4908122 4908326 -147628933 - URR1A DNA MER1_type 0 226 1 5 622 381 171 14 0 chr5 4908716 4908786 -147628473 - U1 snRNA snRNA -94 71 1 5 622 413 324 29 29 chr5 4909372 4909512 -147627747 + RSINE1 SINE B4 12 151 -14 5 622 477 0 0 0 chr5 4909517 4909570 -147627689 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 622 336 235 24 48 chr5 4909661 4909786 -147627473 + Lx8 LINE L1 7352 7473 0 5 622 385 262 73 30 chr5 4911186 4911351 -147625908 - MER3 DNA MER1_type -9 200 29 5 622 468 175 24 19 chr5 4912651 4912869 -147624390 + CT-rich Low_complexity Low_complexity 1 219 0 5 622 1127 30 39 27 chr5 4913227 4913821 -147623438 + (CA)n Simple_repeat Simple_repeat 1 601 0 5 622 324 244 0 0 chr5 4913821 4913911 -147623348 + (CAGAGA)n Simple_repeat Simple_repeat 3 92 0 5 622 521 179 6 0 chr5 4913914 4914076 -147623183 + GA-rich Low_complexity Low_complexity 2 164 0 5 622 226 73 0 47 chr5 4916090 4916133 -147621126 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 622 324 0 0 0 chr5 4916139 4916175 -147621084 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 622 267 319 11 0 chr5 4916298 4916389 -147620870 - MER3 DNA MER1_type 0 209 118 5 622 267 31 0 0 chr5 4920441 4920473 -147616786 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 622 396 288 121 28 chr5 4920659 4920841 -147616418 + Lx7 LINE L1 5587 5785 -1911 5 622 453 36 0 0 chr5 4922046 4922101 -147615158 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 622 372 245 42 21 chr5 4922263 4922359 -147614900 - B1F SINE Alu -47 102 5 5 622 1545 214 79 15 chr5 4923437 4923831 -147613428 + MTD LTR MaLR 1 419 0 5 622 585 291 16 32 chr5 4924014 4924199 -147613060 + B4 SINE B4 63 244 -48 5 622 402 21 0 0 chr5 4924225 4924272 -147612987 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 622 544 166 77 7 chr5 4924293 4924410 -147612849 - PB1D9 SINE Alu -1 119 2 5 622 564 218 92 49 chr5 4924476 4924628 -147612631 + ID_B1 SINE B4 51 210 -14 5 622 234 0 0 0 chr5 4924628 4924654 -147612605 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 5 622 564 218 92 49 chr5 4924654 4924665 -147612594 + ID_B1 SINE B4 211 221 -3 5 622 998 88 62 119 chr5 4924765 4924959 -147612300 + B2_Mm2 SINE B2 1 183 -12 5 622 1295 90 0 11 chr5 4925790 4925969 -147611290 - B2_Mm2 SINE B2 -17 178 2 5 622 2011 159 65 5 chr5 4926603 4926970 -147610289 + Lx LINE L1 6256 6644 -10 5 622 453 229 0 0 chr5 4927574 4927731 -147609528 + (TCCA)n Simple_repeat Simple_repeat 4 160 0 5 622 186 242 0 0 chr5 4927808 4927874 -147609385 + (CCCA)n Simple_repeat Simple_repeat 3 68 0 5 622 244 326 15 15 chr5 4928201 4928332 -147608927 - L2 LINE L2 -722 2697 2567 5 622 297 0 0 0 chr5 4928553 4928586 -147608673 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 622 1047 59 0 0 chr5 4928588 4928723 -147608536 + (GA)n Simple_repeat Simple_repeat 2 136 0 6 622 24 0 0 0 chr5 4929000 4929024 -147608235 + AT_rich Low_complexity Low_complexity 1 24 0 6 622 316 181 77 93 chr5 4930587 4930655 -147606604 + Lx9 LINE L1 7465 7526 -118 6 622 243 0 0 0 chr5 4930655 4930682 -147606577 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 622 316 181 77 93 chr5 4930682 4930796 -147606463 + Lx9 LINE L1 7527 7644 0 6 622 202 233 16 62 chr5 4931199 4931263 -147605996 - L2a LINE L2 -34 3392 3332 6 622 772 65 19 0 chr5 4932616 4932724 -147604535 + B1_Mm SINE Alu 38 147 0 6 622 339 352 62 0 chr5 4932867 4932995 -147604264 - B4A SINE B4 -155 137 2 6 622 515 157 0 33 chr5 4934063 4934155 -147603104 - B1_Mus2 SINE Alu -49 98 10 6 622 370 159 23 0 chr5 4935851 4935939 -147601320 + (TG)n Simple_repeat Simple_repeat 1 90 0 6 622 359 329 26 26 chr5 4935957 4936110 -147601149 - B4A SINE B4 -139 153 1 6 622 40 37 0 0 chr5 4936314 4936368 -147600891 + AT_rich Low_complexity Low_complexity 1 54 0 6 622 38696 44 1 3 chr5 4937512 4943950 -147593309 - L1Md_T LINE L1 0 6585 66 6 622 297 51 0 0 chr5 4944931 4944970 -147592289 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 622 609 284 28 83 chr5 4945315 4945562 -147591697 + L1PB4 LINE L1 5463 5701 -146 6 622 435 92 0 0 chr5 4945562 4945627 -147591632 + (TCTA)n Simple_repeat Simple_repeat 3 67 0 6 622 609 306 35 82 chr5 4945627 4945889 -147591370 + L1PB4 LINE L1 5702 6011 -145 6 622 547 254 0 0 chr5 4946956 4947066 -147590193 + RSINE1 SINE B4 3 112 -53 6 622 25 51 0 0 chr5 4948666 4948705 -147588554 + AT_rich Low_complexity Low_complexity 1 39 0 6 622 873 298 32 25 chr5 4948773 4949052 -147588207 - B4A SINE B4 -7 285 5 6 622 1014 135 165 5 chr5 4949129 4949323 -147587936 - URR1B DNA MER1_type 0 225 1 6 622 726 91 0 0 chr5 4950112 4950233 -147587026 + (TC)n Simple_repeat Simple_repeat 2 122 0 6 622 199 347 60 6 chr5 4950373 4950535 -147586724 + MIRb SINE MIR 9 167 -95 6 622 1784 208 25 0 chr5 4951088 4951453 -147585806 - ORR1D1 LTR MaLR 0 374 1 6 622 459 159 0 0 chr5 4951605 4951718 -147585541 + (CA)n Simple_repeat Simple_repeat 1 113 0 6 622 747 202 123 5 chr5 4952488 4952707 -147584552 - Lx9 LINE L1 -1 7643 7399 6 622 3992 172 25 14 chr5 4952706 4953415 -147583844 + Lx9 LINE L1 6702 7418 -226 6 622 402 74 0 0 chr5 4955898 4955952 -147581307 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 622 282 274 179 0 chr5 4956108 4956203 -147581056 + MTEb LTR MaLR 3 114 -245 6 622 282 270 65 70 chr5 4956349 4956527 -147580732 + RLTR20B1 LTR ERVK 59 244 -319 6 622 289 235 58 12 chr5 4956845 4956931 -147580328 + MTEb LTR MaLR 288 377 -2 6 622 986 235 36 20 chr5 4957145 4957397 -147579862 + MTE2b LTR MaLR 8 263 -116 6 622 254 207 17 0 chr5 4957408 4957466 -147579793 + MTE2b LTR MaLR 320 378 -1 6 622 522 226 106 12 chr5 4957472 4957642 -147579617 + ORR1C2 LTR MaLR 1 186 -188 6 622 766 140 0 43 chr5 4957649 4957836 -147579423 + CT-rich Low_complexity Low_complexity 2 180 0 6 622 573 15 0 0 chr5 4957832 4957898 -147579361 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 622 727 208 67 62 chr5 4957898 4958108 -147579151 + ORR1C2 LTR MaLR 174 384 0 6 622 233 222 145 24 chr5 4958374 4958457 -147578802 - B4A SINE B4 -149 143 51 6 622 366 282 136 58 chr5 4958603 4958964 -147578295 + MER113 DNA MER1_type 52 440 -81 6 622 2485 152 34 5 chr5 4960791 4961239 -147576020 - RMER4A LTR ERVK 0 466 6 6 622 273 266 0 15 chr5 4961298 4961363 -147575896 + ID4_ SINE ID 2 65 -18 6 622 579 299 40 59 chr5 4961677 4962023 -147575236 + MLT1E1A LTR MaLR 318 672 -8 6 622 423 310 35 35 chr5 4962469 4962643 -147574616 + B4A SINE B4 119 292 0 6 622 1029 244 76 22 chr5 4962700 4962976 -147574283 + B4 SINE B4 2 292 0 6 622 216 0 0 0 chr5 4963061 4963085 -147574174 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 622 854 270 191 69 chr5 4963866 4964536 -147572723 + RMER13A LTR ERVK 109 860 0 6 622 1069 274 29 53 chr5 4965065 4965439 -147571820 + ORR1D2 LTR MaLR 4 368 -2 6 622 247 279 0 0 chr5 4965547 4965615 -147571644 - MLT1D LTR MaLR -106 399 332 6 622 24 53 0 0 chr5 4966688 4966726 -147570533 + AT_rich Low_complexity Low_complexity 1 38 0 6 622 783 139 0 0 chr5 4966767 4966896 -147570363 + (TA)n Simple_repeat Simple_repeat 2 130 0 6 622 528 167 6 44 chr5 4967509 4967691 -147569568 + (CCCTAA)n Simple_repeat Simple_repeat 2 176 0 6 622 28 48 0 0 chr5 4968463 4968505 -147568754 + AT_rich Low_complexity Low_complexity 1 42 0 6 622 6124 87 0 2 chr5 4968553 4969375 -147567884 - L1_Mus4 LINE L1 0 6636 5817 6 622 563 102 11 0 chr5 4969375 4969463 -147567796 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 6 622 1128 107 12 0 chr5 4969464 4969633 -147567626 - B2_Mm1t SINE B2 -22 171 1 6 622 577 29 0 0 chr5 4969633 4969703 -147567556 - L1_Mus4 LINE L1 -795 5841 5772 6 622 261 253 0 128 chr5 4970189 4970275 -147566984 + B4 SINE B4 47 121 -171 6 622 304 318 45 38 chr5 4970312 4970404 -147566855 + B4A SINE B4 131 222 -70 6 622 219 69 0 0 chr5 4970404 4970433 -147566826 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 6 622 304 318 45 38 chr5 4970433 4970497 -147566762 + B4A SINE B4 223 287 -5 6 622 266 272 198 0 chr5 4971655 4971817 -147565442 + L1M3 LINE L1 5571 5764 -419 6 622 1029 93 0 0 chr5 4971944 4972095 -147565164 + (CA)n Simple_repeat Simple_repeat 2 152 0 6 622 232 301 32 11 chr5 4972106 4972200 -147565059 - L1M2 LINE L1 -399 5901 5806 6 622 192 77 0 0 chr5 4972204 4972230 -147565029 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 622 1400 81 0 5 chr5 4972338 4972524 -147564735 - B2_Mm2 SINE B2 -10 185 1 6 622 326 292 41 58 chr5 4972553 4972724 -147564535 - B4A SINE B4 -123 169 2 6 622 185 132 0 26 chr5 4973400 4973439 -147563820 + (CAT)n Simple_repeat Simple_repeat 2 39 0 6 622 573 243 86 53 chr5 4973447 4973634 -147563625 - ID_B1 SINE B4 -23 201 9 6 622 21 0 0 0 chr5 4974062 4974083 -147563176 + AT_rich Low_complexity Low_complexity 1 21 0 6 622 387 333 11 48 chr5 4974897 4975083 -147562176 + MER20 DNA MER1_type 38 216 -3 6 622 293 256 22 74 chr5 4975852 4975987 -147561272 - MIR SINE MIR -34 228 101 6 622 708 214 0 0 chr5 4976151 4976324 -147560935 + GA-rich Low_complexity Low_complexity 4 176 0 6 622 1110 231 122 21 chr5 4976826 4977162 -147560097 - MTE2a LTR MaLR -9 370 1 6 622 706 298 82 95 chr5 4978461 4978828 -147558431 + MLT1A0 LTR MaLR 2 363 -2 6 622 288 0 0 0 chr5 4979061 4979093 -147558166 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 622 369 0 0 0 chr5 4979093 4979134 -147558125 + (T)n Simple_repeat Simple_repeat 1 41 0 6 623 232 313 55 74 chr5 4980795 4981012 -147556247 + Helitron3Na_Mam RC Helitron 215 427 -59 6 623 213 65 0 0 chr5 4982979 4983010 -147554249 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 623 901 178 174 19 chr5 4983112 4983324 -147553935 - Lx5 LINE L1 0 7050 6806 6 623 921 155 149 0 chr5 4983523 4983717 -147553542 + URR1B DNA MER1_type 3 225 0 6 623 263 320 20 10 chr5 4984563 4984664 -147552595 + MTEb LTR MaLR 278 379 0 6 623 297 296 65 65 chr5 4984771 4984970 -147552289 + L1MEc LINE L1 953 1151 -5249 6 623 201 74 0 0 chr5 4985081 4985108 -147552151 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 6 623 426 293 60 0 chr5 4985424 4985557 -147551702 - B3 SINE B2 -75 141 1 6 623 2150 177 88 21 chr5 4985714 4986155 -147551104 + RLTR20B1 LTR ERVK 1 456 -107 6 623 846 83 0 0 chr5 4986155 4986288 -147550971 + (TG)n Simple_repeat Simple_repeat 2 134 0 6 623 2150 177 88 21 chr5 4986288 4986314 -147550945 + RLTR20B1 LTR ERVK 457 498 -65 6 623 728 223 0 0 chr5 4986382 4986521 -147550738 - B3 SINE B2 -77 139 1 6 623 347 236 117 11 chr5 4986569 4986663 -147550596 - RSINE1 SINE B4 -2 163 60 6 623 288 207 24 0 chr5 4986708 4986790 -147550469 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 623 353 263 47 19 chr5 4986804 4986922 -147550337 - B3 SINE B2 -13 182 60 6 623 27 49 0 0 chr5 4986928 4986969 -147550290 + AT_rich Low_complexity Low_complexity 1 41 0 6 623 207 107 33 77 chr5 4986969 4987060 -147550199 + A-rich Low_complexity Low_complexity 1 87 0 6 623 240 175 32 0 chr5 4987064 4987127 -147550132 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 623 416 98 0 35 chr5 4987188 4987273 -147549986 + (T)n Simple_repeat Simple_repeat 1 82 0 6 623 691 75 28 0 chr5 4987276 4987382 -147549877 - B1_Mus2 SINE Alu 0 147 39 6 623 242 231 78 62 chr5 4987426 4987555 -147549704 + L1ME1 LINE L1 5258 5388 -791 6 623 333 336 51 38 chr5 4988118 4988276 -147548983 - RSINE1 SINE B4 0 165 6 6 623 367 273 149 41 chr5 4988373 4988736 -147548523 + L1ME1 LINE L1 5614 6015 -164 6 623 738 226 74 66 chr5 4988751 4988993 -147548266 + RMER17C-int LTR ERVK 2631 2874 -364 6 623 1983 133 16 124 chr5 4989272 4989717 -147547542 + RMER10B LTR ERVL 2 398 0 6 623 209 256 0 0 chr5 4990244 4990287 -147546972 + GA-rich Low_complexity Low_complexity 4 46 0 6 623 3525 140 54 3 chr5 4991731 4992303 -147544956 + MT2B LTR ERVL 1 601 0 6 623 348 253 0 95 chr5 4992656 4992761 -147544498 + B1F SINE Alu 4 98 -51 6 623 260 20 82 0 chr5 4993857 4993906 -147543353 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 623 504 301 38 4 chr5 4994315 4994552 -147542707 - L1MC LINE L1 -2949 3197 2953 6 623 2720 57 22 14 chr5 4995990 4996347 -147540912 - L1Md_F2 LINE L1 -3 6579 6220 6 623 302 87 0 0 chr5 4996347 4996393 -147540866 + U5 snRNA snRNA 1 46 -70 6 623 336 48 0 0 chr5 4997095 4997137 -147540122 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 6 623 342 0 0 0 chr5 4997794 4997832 -147539427 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 6 623 558 198 32 32 chr5 4997836 4997961 -147539298 - B1F2 SINE Alu -13 136 12 7 623 423 0 0 0 chr5 4999076 4999123 -147538136 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 623 189 74 0 0 chr5 4999123 4999150 -147538109 + (TATG)n Simple_repeat Simple_repeat 2 28 0 7 623 23 33 0 0 chr5 4999687 4999717 -147537542 + AT_rich Low_complexity Low_complexity 1 30 0 7 623 231 253 51 71 chr5 4999760 4999858 -147537401 - RSINE1 SINE B4 -58 107 12 7 623 24 0 0 0 chr5 5000169 5000193 -147537066 + AT_rich Low_complexity Low_complexity 1 24 0 1 623 336 326 11 0 chr5 5001013 5001105 -147536154 + B1F SINE Alu 1 93 -56 2 623 219 103 0 0 chr5 5001140 5001179 -147536080 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 3 623 915 261 82 70 chr5 5001519 5001874 -147535385 + ORR1E LTR MaLR 1 359 0 4 623 934 203 71 0 chr5 5002677 5002874 -147534385 - B3 SINE B2 -5 211 1 5 623 504 297 103 26 chr5 5003468 5003721 -147533538 + MLT1G3 LTR MaLR 1 308 -287 6 623 232 175 31 16 chr5 5004068 5004132 -147533127 + (TTAA)n Simple_repeat Simple_repeat 1 65 0 7 623 3456 211 51 9 chr5 5004575 5005134 -147532125 + Lx7 LINE L1 6804 7388 -308 8 623 423 0 0 0 chr5 5005134 5005181 -147532078 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 623 3456 211 51 9 chr5 5005181 5005478 -147531781 + Lx7 LINE L1 7389 7695 -1 8 623 272 329 49 0 chr5 5006636 5006718 -147530541 + RSINE1 SINE B4 80 165 0 1 623 294 106 0 0 chr5 5007365 5007412 -147529847 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 623 23 0 0 0 chr5 5009413 5009436 -147527823 + AT_rich Low_complexity Low_complexity 1 23 0 1 623 247 301 0 88 chr5 5009436 5009453 -147527806 - PB1D10 SINE Alu -6 111 39 1 623 248 333 0 0 chr5 5009453 5009516 -147527743 - ID_B1 SINE B4 -42 182 120 1 623 546 317 46 86 chr5 5009915 5010523 -147526736 - L1MC3 LINE L1 -65 7930 7185 1 623 193 274 39 0 chr5 5011304 5011355 -147525904 - MER5B DNA MER1_type 0 178 126 1 623 3480 25 2 0 chr5 5012171 5012566 -147524693 - MTA_Mm LTR MaLR 0 396 1 1 623 743 274 127 46 chr5 5013817 5014077 -147523182 + B4A SINE B4 5 285 -7 1 623 399 315 88 7 chr5 5014372 5014519 -147522740 + B3A SINE B2 1 159 -39 1 623 24 32 0 0 chr5 5014879 5014910 -147522349 + AT_rich Low_complexity Low_complexity 1 31 0 2 623 265 354 13 0 chr5 5014955 5015034 -147522225 - ID2 SINE ID -1 82 3 2 623 258 279 0 42 chr5 5015065 5015136 -147522123 - ID4 SINE ID -11 72 5 2 623 8408 134 15 8 chr5 5015265 5016738 -147520521 - L1_Mur2 LINE L1 -917 4960 3478 2 623 3962 152 72 7 chr5 5016752 5017518 -147519741 + Lx3C LINE L1 5587 6402 -574 2 623 2268 178 49 4 chr5 5017518 5017970 -147519289 + Lx3C LINE L1 6504 6975 -1 2 623 871 231 9 89 chr5 5018459 5018673 -147518586 + B3 SINE B2 1 197 -19 2 623 234 0 0 0 chr5 5018679 5018705 -147518554 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 623 369 0 0 0 chr5 5018970 5019011 -147518248 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 623 390 259 0 0 chr5 5020073 5020154 -147517105 + PB1D10 SINE Alu 29 109 -8 2 623 247 331 127 8 chr5 5020652 5020786 -147516473 - MER5A1 DNA MER1_type -15 151 2 2 623 2157 156 60 12 chr5 5022099 5022501 -147514758 + MTC LTR MaLR 1 421 0 3 623 659 276 50 10 chr5 5024949 5025147 -147512112 + B3 SINE B2 1 206 -10 3 623 21 0 0 0 chr5 5025231 5025252 -147512007 + AT_rich Low_complexity Low_complexity 1 21 0 3 623 654 305 47 0 chr5 5025637 5025827 -147511432 - ID_B1 SINE B4 -11 213 15 3 623 1007 324 27 37 chr5 5026869 5027244 -147510015 - MTEa LTR MaLR 0 379 9 3 623 1030 298 87 6 chr5 5027507 5027851 -147509408 + MTE2b LTR MaLR 8 379 0 3 623 786 250 20 54 chr5 5027895 5028098 -147509161 + B3A SINE B2 3 198 0 3 623 1783 229 62 9 chr5 5028166 5028695 -147508564 + Lx9 LINE L1 7080 7636 -8 3 623 768 296 22 9 chr5 5029485 5029717 -147507542 + B4A SINE B4 2 236 -56 3 623 208 326 21 0 chr5 5029794 5029889 -147507370 + (TA)n Simple_repeat Simple_repeat 1 97 0 3 623 23 0 0 0 chr5 5031760 5031783 -147505476 + AT_rich Low_complexity Low_complexity 1 23 0 4 623 315 122 0 0 chr5 5033746 5033795 -147503464 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 623 531 327 25 38 chr5 5033804 5033963 -147503296 - B4 SINE B4 0 292 136 4 623 285 115 180 0 chr5 5034117 5034178 -147503081 - B4A SINE B4 -23 269 198 4 623 2650 45 3 0 chr5 5034181 5034518 -147502741 - ORR1A1 LTR MaLR -8 338 1 4 623 213 236 109 0 chr5 5034620 5034675 -147502584 - B4 SINE B4 -231 61 1 4 623 441 0 0 0 chr5 5035326 5035375 -147501884 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 623 23 33 0 0 chr5 5035986 5036016 -147501243 + AT_rich Low_complexity Low_complexity 1 30 0 4 623 510 256 36 62 chr5 5037344 5037536 -147499723 - B3A SINE B2 -9 189 3 4 623 767 224 4 140 chr5 5037718 5037946 -147499313 - B3A SINE B2 0 198 2 4 623 244 289 151 73 chr5 5038070 5038275 -147498984 + ORR1E LTR MaLR 33 253 -106 4 623 2060 227 23 78 chr5 5041137 5041795 -147495464 - Lx7 LINE L1 -1 7695 7074 5 623 3575 117 5 45 chr5 5041927 5041955 -147495304 - Lx3_Mus LINE L1 -7 7002 6982 5 623 483 18 0 0 chr5 5041955 5042011 -147495248 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 623 3575 117 5 45 chr5 5042011 5042575 -147494684 - Lx3_Mus LINE L1 -28 6981 6434 5 623 1586 226 18 121 chr5 5042657 5043104 -147494155 + MTD LTR MaLR 19 419 0 5 623 2049 223 21 119 chr5 5043158 5043836 -147493423 + RMER19C LTR ERVK 1 611 0 5 623 478 333 36 6 chr5 5044741 5044907 -147492352 - ID_B1 SINE B4 -34 190 20 5 623 231 328 39 97 chr5 5045099 5045235 -147492024 + B3 SINE B2 10 137 -79 5 623 459 0 0 0 chr5 5045235 5045286 -147491973 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 623 479 344 0 87 chr5 5045286 5045319 -147491940 + RSINE1 SINE B4 147 165 0 5 623 231 328 39 97 chr5 5045319 5045355 -147491904 + B3 SINE B2 138 203 -13 5 623 5930 184 82 81 chr5 5045444 5046025 -147491234 + Lx6 LINE L1 4132 4606 -1274 5 623 369 0 0 0 chr5 5046025 5046066 -147491193 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 623 5930 197 80 60 chr5 5046066 5047778 -147489481 + Lx6 LINE L1 4607 6436 -1024 5 623 945 249 62 8 chr5 5047776 5048035 -147489224 + Lx6 LINE L1 7184 7456 -4 5 623 207 0 0 0 chr5 5048166 5048189 -147489070 + (T)n Simple_repeat Simple_repeat 1 23 0 6 623 1262 14 0 0 chr5 5048191 5048334 -147488925 - B1_Mus2 SINE Alu -4 143 1 6 623 23 0 0 0 chr5 5048363 5048386 -147488873 + AT_rich Low_complexity Low_complexity 1 23 0 6 623 2094 208 107 136 chr5 5048987 5049304 -147487955 + Lx9 LINE L1 6736 7031 -613 6 623 212 196 22 0 chr5 5049304 5049350 -147487909 + B4 SINE B4 1 47 -245 6 623 2094 208 107 136 chr5 5049350 5049409 -147487850 + Lx9 LINE L1 7032 7087 -557 6 623 1032 84 21 7 chr5 5049409 5049552 -147487707 + B1_Mus1 SINE Alu 4 148 0 6 623 2094 208 107 136 chr5 5049552 5050064 -147487195 + Lx9 LINE L1 7088 7643 -1 6 623 1595 16 11 16 chr5 5050070 5050260 -147486999 + B2_Mm1t SINE B2 2 190 -3 6 623 27 0 0 0 chr5 5050260 5050287 -147486972 + AT_rich Low_complexity Low_complexity 1 27 0 6 623 204 40 0 0 chr5 5050312 5050337 -147486922 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 623 308 262 12 23 chr5 5050745 5050831 -147486428 + HAL1-3A_ME LINE L1 1928 2012 -846 7 623 666 152 9 9 chr5 5050837 5051052 -147486207 + (CA)n Simple_repeat Simple_repeat 1 215 0 7 623 477 178 0 0 chr5 5051063 5051181 -147486078 + (CA)n Simple_repeat Simple_repeat 1 118 0 7 623 1031 68 0 27 chr5 5053391 5053541 -147483718 + L1Md_F2 LINE L1 6428 6573 -9 7 623 468 0 0 0 chr5 5057556 5057608 -147479651 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 623 419 242 102 24 chr5 5057634 5057761 -147479498 + MLT1A1 LTR MaLR 267 403 -5 7 623 3938 151 99 3 chr5 5058257 5058996 -147478263 - Lx LINE L1 -8 6646 5837 7 623 768 278 68 0 chr5 5059024 5059215 -147478044 - ID_B1 SINE B4 -14 210 7 7 623 742 206 21 26 chr5 5059446 5059637 -147477622 - B3 SINE B2 -9 186 2 7 623 21710 70 8 11 chr5 5059933 5063031 -147474228 + L1Md_F2 LINE L1 2498 5586 -297 7 623 7231 64 36 3 chr5 5063031 5063991 -147473268 + L1Md_F2 LINE L1 5587 6578 -4 7 623 329 306 18 53 chr5 5065866 5065980 -147471279 - PB1D7 SINE Alu -7 113 4 7 623 5488 217 74 32 chr5 5065995 5067483 -147469776 + Lx7 LINE L1 6146 7696 0 8 623 1829 272 23 2 chr5 5067495 5068015 -147469244 + RCHARR1 DNA MER1_type 347 877 -97 8 623 265 302 0 0 chr5 5068012 5068075 -147469184 - MER2B DNA MER2_type -265 71 9 8 623 26 0 0 0 chr5 5068966 5068992 -147468267 + AT_rich Low_complexity Low_complexity 1 26 0 8 623 296 333 131 16 chr5 5069026 5069209 -147468050 - MIR SINE MIR -36 226 23 8 623 7925 80 3 2 chr5 5069367 5071238 -147466021 - L1_Mus1 LINE L1 -1 6566 4691 8 623 606 291 168 45 chr5 5071593 5071902 -147465357 - MER21B LTR ERV1 -99 764 418 8 623 329 176 146 18 chr5 5072046 5072156 -147465103 + Lx LINE L1 6531 6654 0 8 623 4212 107 1 3 chr5 5072309 5073394 -147463865 - L1VL4 LINE L1 -4070 1813 725 8 623 452 228 16 8 chr5 5073402 5073530 -147463729 - L1VL4 LINE L1 -5813 803 675 8 623 317 205 35 188 chr5 5073611 5073755 -147463504 - L1VL1 LINE L1 -6065 357 236 8 623 1335 163 3 72 chr5 5073761 5074052 -147463207 + L1_Mur1 LINE L1 4494 4764 -1122 9 623 690 197 0 21 chr5 5074198 5074338 -147462921 + Lx2B LINE L1 6457 6593 -407 9 623 479 278 44 146 chr5 5074342 5074637 -147462622 + MLT1A0 LTR MaLR 80 344 -21 9 623 294 262 89 29 chr5 5074656 5074804 -147462455 - L1M4c LINE L1 -4691 1787 1519 9 623 255 341 128 0 chr5 5074809 5074988 -147462271 + Charlie1 DNA MER1_type 773 974 -1807 9 623 1605 149 22 11 chr5 5075072 5075343 -147461916 + RLTR17 LTR ERVK 1 274 -418 9 623 834 169 21 58 chr5 5075337 5075526 -147461733 + RLTR17 LTR ERVK 510 691 -1 9 623 327 252 216 68 chr5 5075621 5075931 -147461328 + ORR1E LTR MaLR 1 377 -2 9 623 24213 23 0 0 chr5 5076726 5080381 -147456878 - L1Md_A LINE L1 0 6582 2928 9 623 379 305 22 45 chr5 5080478 5080825 -147456434 - L1M2 LINE L1 -2322 3821 3464 9 623 243 0 0 0 chr5 5080877 5080904 -147456355 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 623 1182 37 0 0 chr5 5080904 5081040 -147456219 - B1_Mm SINE Alu -10 137 2 1 623 555 294 141 52 chr5 5081042 5081468 -147455791 - Lx8 LINE L1 -7 7466 7003 1 623 376 304 110 63 chr5 5081502 5081743 -147455516 - L1MD LINE L1 -2720 3426 3193 1 623 1712 179 12 6 chr5 5081743 5082069 -147455190 + ORR1A4 LTR MaLR 2 329 0 1 623 376 304 110 63 chr5 5082069 5082255 -147455004 - L1MD LINE L1 -2954 3192 2979 1 623 285 29 0 0 chr5 5083399 5083433 -147453826 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 1 623 386 61 15 0 chr5 5083435 5083501 -147453758 - L1_Mus3 LINE L1 -2 6636 6570 1 623 256 272 17 9 chr5 5083656 5083771 -147453488 - L1M4 LINE L1 -1108 5038 4923 1 623 309 198 25 144 chr5 5083785 5083903 -147453356 + MT2B LTR ERVL 153 256 -345 1 623 592 226 9 9 chr5 5083800 5083916 -147453343 + B1_Mur3 SINE Alu 1 116 -33 1 623 222 118 0 0 chr5 5083916 5083950 -147453309 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 623 765 276 0 6 chr5 5084393 5084564 -147452695 + B3 SINE B2 3 172 -44 1 623 1563 158 0 92 chr5 5084564 5084711 -147452548 + MERVK26-int LTR ERVK 6633 6757 -162 1 623 2989 127 8 16 chr5 5084711 5085201 -147452058 - Lx2 LINE L1 -1 6996 6511 1 623 1563 158 0 92 chr5 5085201 5085359 -147451900 + MERVK26-int LTR ERVK 6758 6910 -9 1 623 1053 128 0 0 chr5 5085573 5085721 -147451538 + B1_Mus1 SINE Alu 1 148 0 1 623 535 80 45 0 chr5 5086041 5086129 -147451130 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 1 623 27 0 0 0 chr5 5086544 5086571 -147450688 + AT_rich Low_complexity Low_complexity 1 27 0 1 623 265 221 38 25 chr5 5087057 5087119 -147450140 - B2_Mm2 SINE B2 -19 176 114 1 623 2732 171 100 35 chr5 5087119 5087892 -147449367 + RLTR13D3 LTR ERVK 1 1114 0 1 623 934 73 0 8 chr5 5087892 5088015 -147449244 - B2_Mm2 SINE B2 -73 122 1 1 623 259 263 105 46 chr5 5088159 5088378 -147448881 + Lx9 LINE L1 7413 7644 0 1 623 261 0 0 0 chr5 5089202 5089231 -147448028 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1 623 204 139 0 27 chr5 5089237 5089274 -147447985 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 1 623 361 192 115 16 chr5 5091130 5091252 -147446007 - Lx9 LINE L1 -127 7517 7384 1 623 26 30 0 0 chr5 5091291 5091324 -147445935 + AT_rich Low_complexity Low_complexity 1 33 0 1 623 1053 59 0 0 chr5 5091912 5092047 -147445212 - L1_Mus2 LINE L1 0 6566 6432 1 623 1783 106 10 0 chr5 5092047 5092339 -147444920 + MusHAL1 LINE L1 2122 2416 -296 1 623 4472 40 0 0 chr5 5093242 5093772 -147443487 + L1Md_T LINE L1 6053 6582 0 1 623 765 106 0 0 chr5 5096158 5096271 -147440988 + (GGGA)n Simple_repeat Simple_repeat 2 114 0 1 623 234 296 0 69 chr5 5096280 5096367 -147440892 + polypurine Low_complexity Low_complexity 5 85 0 1 623 247 242 21 10 chr5 5097483 5097579 -147439680 + (TA)n Simple_repeat Simple_repeat 1 97 0 1 623 229 361 14 43 chr5 5098076 5098215 -147439044 + MIR3 SINE MIR 74 208 0 1 623 23 0 0 0 chr5 5098909 5098932 -147438327 + AT_rich Low_complexity Low_complexity 1 23 0 1 623 1257 245 87 26 chr5 5099297 5099687 -147437572 - MTD LTR MaLR -1 418 5 1 623 377 308 0 0 chr5 5102183 5102290 -147434969 - RSINE1 SINE B4 -47 118 12 1 623 281 346 44 32 chr5 5102567 5102725 -147434534 - RSINE1 SINE B4 -2 163 4 1 623 681 36 0 0 chr5 5103132 5103216 -147434043 + (TC)n Simple_repeat Simple_repeat 1 84 0 1 623 897 110 62 0 chr5 5106204 5106350 -147430909 + B2_Mm2 SINE B2 5 159 -36 1 623 180 77 0 0 chr5 5106350 5106376 -147430883 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 623 23 68 0 0 chr5 5106383 5106427 -147430832 + AT_rich Low_complexity Low_complexity 1 44 0 1 623 560 198 20 11 chr5 5107204 5107327 -147429932 + B1_Mur2 SINE Alu 1 120 0 1 623 243 215 90 30 chr5 5107394 5107461 -147429798 + Kanga1 DNA Tc2 1654 1724 -21 1 623 1239 283 21 32 chr5 5110632 5111004 -147426255 + MTEa LTR MaLR 1 368 -11 1 624 29 0 0 0 chr5 5113034 5113063 -147424196 + AT_rich Low_complexity Low_complexity 1 29 0 1 624 804 349 40 0 chr5 5113147 5113419 -147423840 + B4A SINE B4 8 290 -2 1 624 26 30 0 0 chr5 5113942 5113975 -147423284 + AT_rich Low_complexity Low_complexity 1 33 0 1 624 217 27 26 51 chr5 5114605 5114644 -147422615 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 624 596 278 28 7 chr5 5114673 5114818 -147422441 - B1F1 SINE Alu 0 149 2 1 624 360 0 0 0 chr5 5115818 5115858 -147421401 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 624 258 32 0 0 chr5 5116468 5116499 -147420760 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 624 3644 239 140 58 chr5 5116937 5118427 -147418832 + RLTR22_Mur LTR ERVK 1 1611 -237 1 624 247 242 48 87 chr5 5118455 5118559 -147418700 + RLTR22_Mur LTR ERVK 1747 1846 -2 1 624 3610 22 66 26 chr5 5118689 5119146 -147418113 - IAPLTR2_Mm LTR ERVK 0 475 1 1 624 294 95 0 0 chr5 5120022 5120064 -147417195 + (A)n Simple_repeat Simple_repeat 1 42 0 1 624 265 253 35 24 chr5 5120929 5121014 -147416245 + Lx8 LINE L1 7261 7346 -127 1 624 392 290 54 125 chr5 5121391 5121726 -147415533 + HAL1 LINE L1 971 1281 -1226 1 624 416 292 135 55 chr5 5121918 5122302 -147414957 + L1MB5 LINE L1 5571 5985 -189 1 624 346 204 0 16 chr5 5122482 5122552 -147414707 + RSINE1 SINE B4 3 71 -221 1 624 419 0 20 0 chr5 5122619 5122670 -147414589 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 624 23 0 0 0 chr5 5122692 5122715 -147414544 + AT_rich Low_complexity Low_complexity 1 23 0 1 624 311 278 52 65 chr5 5122835 5122989 -147414270 + HAL1 LINE L1 1510 1661 -846 1 624 567 262 124 31 chr5 5123355 5123548 -147413711 + B3 SINE B2 1 211 -5 1 624 414 277 11 8 chr5 5123842 5123944 -147413315 + ID_B1 SINE B4 76 169 -55 1 624 301 339 54 18 chr5 5123862 5123973 -147413286 + 7SLRNA srpRNA srpRNA 5 119 -195 1 624 348 138 0 0 chr5 5123974 5124039 -147413220 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 624 296 330 18 0 chr5 5124051 5124160 -147413099 + (CATG)n Simple_repeat Simple_repeat 2 112 0 1 624 978 92 42 7 chr5 5125084 5125226 -147412033 + B1_Mus1 SINE Alu 1 147 -1 1 624 359 68 17 0 chr5 5125249 5125308 -147411951 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 1 624 250 378 0 0 chr5 5125745 5125843 -147411416 - PB1D10 SINE Alu -17 100 3 1 624 21 36 0 0 chr5 5126204 5126232 -147411027 + AT_rich Low_complexity Low_complexity 1 28 0 1 624 270 242 129 0 chr5 5126296 5126358 -147410901 + ID_B1 SINE B4 86 155 -69 1 624 212 175 0 0 chr5 5126361 5126401 -147410858 + A-rich Low_complexity Low_complexity 1 40 0 1 624 1488 71 28 0 chr5 5127862 5128074 -147409185 - L1_Mus3 LINE L1 -5 6633 6416 1 624 925 43 92 0 chr5 5128074 5128215 -147409044 + L1_Mus3 LINE L1 6267 6420 -216 1 624 468 243 28 18 chr5 5128224 5128333 -147408926 - PB1D9 SINE Alu -7 113 4 1 624 244 224 69 0 chr5 5128744 5128802 -147408457 + MLT1N2 LTR MaLR 501 562 0 1 624 642 179 0 0 chr5 5129184 5129352 -147407907 + CT-rich Low_complexity Low_complexity 2 169 0 1 624 1118 72 0 22 chr5 5129367 5129551 -147407708 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 624 185 35 69 0 chr5 5129650 5129679 -147407580 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 1 624 339 265 58 100 chr5 5130196 5130506 -147406753 - L1MA10 LINE L1 -9 6325 6029 1 624 234 208 0 20 chr5 5130540 5130589 -147406670 + (TTAG)n Simple_repeat Simple_repeat 3 50 0 1 624 628 221 8 0 chr5 5130594 5130721 -147406538 - B1_Mur2 SINE Alu -17 132 5 1 624 288 0 0 0 chr5 5131427 5131459 -147405800 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 624 341 292 98 98 chr5 5131925 5132149 -147405110 + ORR1D2 LTR MaLR 1 224 -146 1 624 304 233 46 11 chr5 5132162 5132249 -147405010 + MTEb LTR MaLR 171 260 -110 1 624 391 202 85 34 chr5 5132309 5132427 -147404832 + MTEb LTR MaLR 256 379 0 1 624 259 326 76 23 chr5 5132464 5132596 -147404663 - B1F1 SINE Alu -8 141 3 1 624 202 262 0 32 chr5 5132752 5132815 -147404444 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 1 624 332 263 25 50 chr5 5133059 5133179 -147404080 + PB1D10 SINE Alu 1 117 0 1 624 740 220 24 36 chr5 5135697 5135862 -147401397 - RSINE1 SINE B4 0 165 3 1 624 258 316 93 25 chr5 5135887 5136124 -147401135 - L1MC4 LINE L1 -3419 3118 2866 1 624 575 250 228 35 chr5 5136154 5136352 -147400907 + MTD LTR MaLR 1 231 -190 1 624 204 40 0 0 chr5 5136352 5136377 -147400882 + (TAAG)n Simple_repeat Simple_repeat 3 27 0 1 624 575 221 236 31 chr5 5136377 5136523 -147400736 + MTD LTR MaLR 232 407 -12 1 624 272 322 54 14 chr5 5136529 5136677 -147400582 - RSINE1 SINE B4 -7 158 5 1 624 341 210 74 44 chr5 5136861 5137041 -147400218 - L1MC4 LINE L1 -3852 2685 2499 1 624 455 319 47 59 chr5 5137044 5137300 -147399959 - L1MC4 LINE L1 -5129 1409 1157 1 624 929 57 0 8 chr5 5137333 5137458 -147399801 + (TTCTCC)n Simple_repeat Simple_repeat 1 124 0 1 624 704 295 18 6 chr5 5138660 5138827 -147398432 - B3A SINE B2 -28 170 2 1 624 180 77 0 0 chr5 5139666 5139692 -147397567 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1 624 570 67 0 0 chr5 5141371 5141446 -147395813 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 624 357 43 0 0 chr5 5141446 5141492 -147395767 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 624 387 0 0 0 chr5 5141549 5141592 -147395667 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 624 438 304 81 41 chr5 5141603 5141805 -147395454 - B4A SINE B4 -12 280 69 1 624 486 146 22 0 chr5 5141805 5141894 -147395365 + L1_Mus3 LINE L1 6163 6253 -383 1 624 2544 50 11 90 chr5 5141897 5141953 -147395306 + ORR1A1 LTR MaLR 1 56 -290 1 624 1046 97 7 0 chr5 5141953 5142097 -147395162 + B1_Mus2 SINE Alu 3 147 0 1 624 2544 50 11 90 chr5 5142097 5142416 -147394843 + ORR1A1 LTR MaLR 57 346 0 1 624 9611 152 26 82 chr5 5142416 5143501 -147393758 + ORR1A1-int LTR MaLR 1 962 -1001 1 624 2983 76 2 18 chr5 5143501 5143901 -147393358 + L1_Mus1 LINE L1 6174 6567 0 1 624 9611 152 26 82 chr5 5143901 5144893 -147392366 + ORR1A1-int LTR MaLR 963 1963 0 1 624 2610 37 65 0 chr5 5144893 5145218 -147392041 + ORR1A1 LTR MaLR 1 346 0 1 624 2706 91 5 5 chr5 5145218 5145604 -147391655 + L1_Mus3 LINE L1 6252 6637 -1 1 624 23 0 0 0 chr5 5145618 5145641 -147391618 + AT_rich Low_complexity Low_complexity 1 23 0 2 624 887 329 25 29 chr5 5147430 5147746 -147389513 + MTE2a LTR MaLR 59 373 -6 2 624 585 0 0 0 chr5 5147864 5147929 -147389330 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 624 1093 76 21 0 chr5 5148007 5148151 -147389108 + B1_Mus1 SINE Alu 1 147 -1 2 624 191 114 29 0 chr5 5148151 5148186 -147389073 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 624 39 0 0 0 chr5 5148187 5148226 -147389033 + AT_rich Low_complexity Low_complexity 1 39 0 2 624 522 0 0 0 chr5 5148274 5148332 -147388927 + (GGA)n Simple_repeat Simple_repeat 3 60 0 2 624 1038 209 162 7 chr5 5151132 5151435 -147385824 - ORR1D1 LTR MaLR -8 366 17 2 624 261 0 0 0 chr5 5153349 5153378 -147383881 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 624 2445 266 119 16 chr5 5153380 5154298 -147382961 + Lx9 LINE L1 6329 7340 -304 2 624 477 0 0 0 chr5 5154304 5154357 -147382902 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 624 291 54 0 0 chr5 5154412 5154449 -147382810 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 624 304 281 39 77 chr5 5154601 5154705 -147382554 + B3A SINE B2 83 182 -16 2 624 7517 53 14 1 chr5 5155837 5157157 -147380102 + L1_Mus1 LINE L1 5229 6565 -2 2 624 345 346 38 0 chr5 5157583 5157716 -147379543 + B1F1 SINE Alu 7 144 -5 2 624 297 0 0 0 chr5 5159609 5159642 -147377617 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 624 348 337 0 43 chr5 5160228 5160414 -147376845 + (TATG)n Simple_repeat Simple_repeat 1 178 0 2 624 387 276 51 20 chr5 5160850 5160965 -147376294 - B1_Mur1 SINE Alu -8 141 29 2 624 1044 195 34 0 chr5 5161192 5161397 -147375862 - URR1B DNA MER1_type -6 219 8 2 624 254 303 97 42 chr5 5161677 5161915 -147375344 - L1MC2 LINE L1 -2 6342 6092 2 624 206 128 0 25 chr5 5162044 5162084 -147375175 + GA-rich Low_complexity Low_complexity 1 39 0 2 624 279 71 0 0 chr5 5162107 5162149 -147375110 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 2 624 904 274 9 19 chr5 5163619 5163831 -147373428 + B3 SINE B2 2 211 -5 2 624 1141 201 5 9 chr5 5164008 5164219 -147373040 + URR1A DNA MER1_type 1 210 -16 2 624 987 306 38 34 chr5 5164737 5165001 -147372258 + MTE2b LTR MaLR 2 266 -113 2 624 1547 227 57 31 chr5 5167365 5167719 -147369540 - MTE2a LTR MaLR -2 377 15 2 624 6882 58 8 11 chr5 5168027 5168851 -147368408 - L1Md_F2 LINE L1 -495 6087 5281 2 624 3597 31 0 0 chr5 5168851 5169273 -147367986 - L1Md_T LINE L1 0 6582 6161 2 624 6882 69 0 27 chr5 5169273 5169616 -147367643 - L1Md_F2 LINE L1 -603 5280 4939 2 624 3589 80 13 0 chr5 5169616 5170092 -147367167 + L1_Mus1 LINE L1 6086 6567 0 2 624 1859 167 16 87 chr5 5170835 5171216 -147366043 + ORR1B1 LTR MaLR 41 394 0 2 624 639 225 62 8 chr5 5172602 5172756 -147364503 + B3A SINE B2 2 166 -50 2 624 423 0 0 0 chr5 5172756 5172803 -147364456 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 624 588 232 83 24 chr5 5172803 5172816 -147364443 + B3 SINE B2 167 179 -37 2 624 303 71 0 0 chr5 5173014 5173056 -147364203 + (CATA)n Simple_repeat Simple_repeat 1 42 0 2 624 422 333 110 80 chr5 5173271 5173607 -147363652 + ORR1E LTR MaLR 1 346 -13 2 624 570 276 21 110 chr5 5174189 5174425 -147362834 + B3 SINE B2 2 216 0 2 624 247 310 38 6 chr5 5174542 5174701 -147362558 + L1MC3 LINE L1 5821 5984 -1801 2 624 231 306 0 0 chr5 5174849 5174934 -147362325 + L1MC3 LINE L1 6149 6233 -111 2 624 22 35 0 0 chr5 5175004 5175033 -147362226 + AT_rich Low_complexity Low_complexity 1 29 0 2 624 204 49 98 0 chr5 5175696 5175737 -147361522 + (TAAAA)n Simple_repeat Simple_repeat 3 47 0 2 624 434 320 29 0 chr5 5175774 5175877 -147361382 + PB1D10 SINE Alu 2 107 -10 2 624 246 359 109 45 chr5 5176988 5177189 -147360070 + MIRb SINE MIR 31 244 -24 2 624 1758 172 87 3 chr5 5177322 5177666 -147359593 - ORR1B1 LTR MaLR -1 393 21 2 624 513 0 0 0 chr5 5180396 5180453 -147356806 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 624 207 0 0 0 chr5 5180547 5180570 -147356689 + (T)n Simple_repeat Simple_repeat 1 23 0 2 624 204 337 22 0 chr5 5181013 5181102 -147356157 + MIR3 SINE MIR 109 199 -9 2 624 326 284 44 35 chr5 5182320 5182433 -147354826 - L1MC LINE L1 -843 5303 5190 2 624 571 304 94 38 chr5 5182675 5183335 -147353924 - L1M4b LINE L1 -2745 4261 3565 2 624 327 318 150 18 chr5 5183382 5183776 -147353483 - L1M4b LINE L1 -3509 3497 3052 2 624 241 296 185 22 chr5 5184273 5184587 -147352672 - L1M4b LINE L1 -4968 2366 2002 2 624 216 158 0 0 chr5 5185399 5185437 -147351822 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 624 257 70 0 44 chr5 5185437 5185482 -147351777 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 2 624 255 405 62 6 chr5 5186029 5186208 -147351051 - MIRc SINE MIR -29 239 51 2 624 540 136 0 0 chr5 5186372 5186460 -147350799 + (TC)n Simple_repeat Simple_repeat 1 88 0 2 624 192 292 0 0 chr5 5186535 5186583 -147350676 - L2a LINE L2 -16 3410 3363 2 624 254 347 45 65 chr5 5187724 5187878 -147349381 - MIR SINE MIR -89 173 23 2 624 272 27 27 0 chr5 5188067 5188104 -147349155 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 2 624 201 250 0 0 chr5 5188458 5188518 -147348741 + G-rich Low_complexity Low_complexity 1 60 0 2 624 819 173 0 0 chr5 5188521 5188689 -147348570 + GA-rich Low_complexity Low_complexity 2 169 0 2 624 453 36 0 0 chr5 5189652 5189707 -147347552 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 624 288 289 144 0 chr5 5190420 5190517 -147346742 - B1F1 SINE Alu -35 114 4 2 624 699 263 91 0 chr5 5191476 5191674 -147345585 + B3 SINE B2 1 216 0 2 624 710 314 51 82 chr5 5191918 5192310 -147344949 + MLT1B LTR MaLR 1 380 -10 2 624 328 311 109 54 chr5 5193223 5193444 -147343815 - L2a LINE L2 -167 3259 3027 2 624 180 337 39 39 chr5 5193545 5193647 -147343612 - L2a LINE L2 -637 2782 2681 2 624 1975 185 57 18 chr5 5194299 5194700 -147342559 + MTD LTR MaLR 1 417 -2 2 624 255 189 0 0 chr5 5194739 5194792 -147342467 + (CAT)n Simple_repeat Simple_repeat 1 53 0 2 624 28 0 0 0 chr5 5196144 5196172 -147341087 + AT_rich Low_complexity Low_complexity 1 28 0 2 624 32 0 0 0 chr5 5196526 5196558 -147340701 + AT_rich Low_complexity Low_complexity 1 32 0 2 624 1869 114 11 0 chr5 5196562 5196843 -147340416 - L1_Mus2 LINE L1 -1 6565 6282 2 624 22 0 0 0 chr5 5197175 5197197 -147340062 + AT_rich Low_complexity Low_complexity 1 22 0 2 624 248 344 72 104 chr5 5197668 5197723 -147339536 - MamGypLTR1d LTR Gypsy -540 273 226 2 624 378 0 0 0 chr5 5197723 5197765 -147339494 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 624 248 344 72 104 chr5 5197765 5197930 -147339329 - MamGypLTR1d LTR Gypsy -588 225 60 2 624 1385 190 29 185 chr5 5197961 5198414 -147338845 + ORR1C2 LTR MaLR 1 382 -2 2 624 242 204 0 0 chr5 5198574 5198623 -147338636 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 2 624 736 245 43 24 chr5 5198627 5198836 -147338423 - B3 SINE B2 -3 213 1 2 624 216 317 98 0 chr5 5198925 5199007 -147338252 + L2a LINE L2 3304 3393 -33 2 624 243 181 47 24 chr5 5199693 5199778 -147337481 + (TA)n Simple_repeat Simple_repeat 2 88 0 2 624 1533 59 0 0 chr5 5200497 5200683 -147336576 + B2_Mm1t SINE B2 1 186 -7 2 624 885 188 193 0 chr5 5201444 5201625 -147335634 + B3 SINE B2 1 216 0 2 624 863 76 0 16 chr5 5201639 5201760 -147335499 + B1_Mm SINE Alu 29 147 0 2 624 306 0 0 0 chr5 5201760 5201794 -147335465 + (A)n Simple_repeat Simple_repeat 1 34 0 2 624 1885 175 23 46 chr5 5202713 5203108 -147334151 - ORR1B1 LTR MaLR -8 386 1 2 624 311 307 9 90 chr5 5204370 5204404 -147332855 - B3A SINE B2 0 198 171 2 624 303 28 0 0 chr5 5204404 5204440 -147332819 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 624 311 307 9 90 chr5 5204440 5204516 -147332743 - B3A SINE B2 -28 170 97 2 624 182 347 120 8 chr5 5205551 5205676 -147331583 - L3 LINE CR1 -510 3979 3841 2 624 411 185 106 32 chr5 5207239 5207362 -147329897 - MTD LTR MaLR -12 407 276 2 624 201 195 0 0 chr5 5208873 5208914 -147328345 + G-rich Low_complexity Low_complexity 4 44 0 2 624 308 255 169 20 chr5 5208914 5209062 -147328197 + HAL1-3A_ME LINE L1 2284 2453 -405 2 624 328 304 124 43 chr5 5209653 5209911 -147327348 - B4 SINE B4 -11 281 3 2 624 1273 114 0 20 chr5 5210340 5210537 -147326722 - B2_Mm2 SINE B2 -1 194 2 2 624 423 0 0 0 chr5 5210993 5211040 -147326219 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 624 672 252 219 33 chr5 5211457 5211818 -147325441 - MER31B LTR ERV1 -12 454 27 2 624 252 0 0 0 chr5 5212000 5212028 -147325231 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 624 26 30 0 0 chr5 5212183 5212216 -147325043 + AT_rich Low_complexity Low_complexity 1 33 0 2 624 234 0 0 0 chr5 5212739 5212765 -147324494 + (A)n Simple_repeat Simple_repeat 1 26 0 2 624 180 0 0 0 chr5 5213142 5213162 -147324097 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 624 230 56 28 0 chr5 5215769 5215805 -147321454 + (TTG)n Simple_repeat Simple_repeat 2 38 0 2 624 261 0 0 0 chr5 5215867 5215896 -147321363 + (A)n Simple_repeat Simple_repeat 1 29 0 2 624 1147 22 29 0 chr5 5215897 5216033 -147321226 + B1_Mm SINE Alu 2 141 -6 2 624 216 0 0 0 chr5 5216037 5216061 -147321198 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 2 624 318 271 56 0 chr5 5218045 5218152 -147319107 + MLT1G1 LTR MaLR 2 114 -477 2 624 531 261 150 16 chr5 5218402 5218873 -147318386 - L1MCa LINE L1 -3716 2848 2308 2 624 307 327 104 43 chr5 5218955 5219166 -147318093 - L1MCa LINE L1 -5816 229 6 2 624 327 280 155 57 chr5 5219245 5219438 -147317821 + MLT1G1 LTR MaLR 362 573 -6 2 624 576 209 7 7 chr5 5220095 5220249 -147317010 + Lx7 LINE L1 3321 3474 -2406 2 624 2437 221 99 102 chr5 5220251 5222114 -147315145 + Lx7 LINE L1 4174 6021 -1675 2 624 1441 242 67 77 chr5 5222162 5222685 -147314574 + RLTR31_Mur LTR ERVK 11 528 -25 2 624 6795 215 57 46 chr5 5222808 5224469 -147312790 + Lx7 LINE L1 6017 7696 0 2 624 275 288 116 79 chr5 5224577 5224818 -147312441 + RMER15 LTR ERVL 3 252 -323 3 624 4490 234 87 16 chr5 5225154 5226815 -147310444 + Lx7 LINE L1 5704 7460 0 3 624 25 0 0 0 chr5 5226828 5226853 -147310406 + AT_rich Low_complexity Low_complexity 1 25 0 3 624 252 347 63 29 chr5 5227623 5227798 -147309461 + MER58B DNA MER1_type 27 207 -134 3 624 626 333 115 0 chr5 5229302 5229710 -147307549 + L1_Mur3 LINE L1 5087 5541 -339 3 624 277 290 43 7 chr5 5229715 5229854 -147307405 + L1M1 LINE L1 5712 5855 -445 3 624 438 20 0 0 chr5 5229969 5230020 -147307239 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 624 21 0 0 0 chr5 5230417 5230438 -147306821 + AT_rich Low_complexity Low_complexity 1 21 0 3 624 226 205 0 0 chr5 5230735 5230774 -147306485 + L1_Mur2 LINE L1 5350 5388 -489 3 624 555 296 33 72 chr5 5231926 5232044 -147305215 + Lx8 LINE L1 4844 5025 -1118 3 624 1252 43 0 0 chr5 5232044 5232183 -147305076 + B1_Mus1 SINE Alu 5 143 -5 3 624 555 298 42 81 chr5 5232183 5232456 -147304803 + Lx8 LINE L1 4955 5222 -625 3 624 241 300 78 20 chr5 5232505 5232607 -147304652 - L1_Rod LINE L1 -185 5662 5555 3 624 1048 311 58 35 chr5 5232642 5233169 -147304090 - L1_Mur3 LINE L1 -401 5479 4937 3 624 3662 25 2 0 chr5 5233169 5233564 -147303695 - MTA_Mm LTR MaLR 0 396 1 3 624 1048 311 58 35 chr5 5233564 5233635 -147303624 - L1_Mur3 LINE L1 -944 4936 4867 3 624 1962 321 104 52 chr5 5233637 5235078 -147302181 + Lx8 LINE L1 5714 7229 -244 3 624 3187 74 14 2 chr5 5235078 5235523 -147301736 + RLTR44E LTR ERVK 3 452 0 3 624 942 156 44 0 chr5 5235524 5235684 -147301575 + RLTR44-int LTR ERVK 24 190 -2622 3 624 15357 39 58 43 chr5 5235697 5236867 -147300392 + RLTR44-int LTR ERVK 781 2018 -794 3 624 228 221 36 83 chr5 5236867 5236951 -147300308 - LTR85c LTR Gypsy? -701 122 43 3 624 15357 39 58 43 chr5 5236951 5237699 -147299560 + RLTR44-int LTR ERVK 2019 2812 0 3 624 3678 65 9 0 chr5 5237699 5238147 -147299112 + RLTR44E LTR ERVK 1 452 0 3 624 267 31 0 0 chr5 5238349 5238381 -147298878 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 624 438 282 51 43 chr5 5238390 5238606 -147298653 + L1_Mur3 LINE L1 5300 5558 -322 3 624 378 0 0 0 chr5 5238606 5238648 -147298611 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 3 624 435 298 181 65 chr5 5238648 5238932 -147298327 + L1_Mur3 LINE L1 5532 5836 -11 3 624 411 21 0 0 chr5 5239175 5239223 -147298036 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 3 624 475 256 56 42 chr5 5239359 5239460 -147297799 + B1F2 SINE Alu 5 111 -38 3 624 408 40 0 0 chr5 5239460 5239510 -147297749 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 3 624 475 256 56 42 chr5 5239510 5239525 -147297734 + B1F2 SINE Alu 112 124 -25 3 624 2922 111 26 5 chr5 5239525 5239943 -147297316 - L1_Mus2 LINE L1 0 6566 6140 3 624 475 256 56 42 chr5 5239943 5239968 -147297291 + B1F2 SINE Alu 125 149 0 3 624 542 316 163 18 chr5 5240684 5241022 -147296237 - MLT1B LTR MaLR 0 390 4 3 624 28 48 0 0 chr5 5241740 5241782 -147295477 + AT_rich Low_complexity Low_complexity 1 42 0 3 624 1515 64 21 5 chr5 5241786 5241974 -147295285 + B2_Mm2 SINE B2 2 192 -3 3 625 196 200 16 16 chr5 5243656 5243717 -147293542 + A-rich Low_complexity Low_complexity 4 64 0 3 625 399 113 0 0 chr5 5244903 5244965 -147292294 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 625 298 304 21 69 chr5 5246264 5246340 -147290919 + L1MD3 LINE L1 6695 6767 -1228 3 625 234 0 0 0 chr5 5246340 5246366 -147290893 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 3 625 298 305 24 73 chr5 5246366 5246467 -147290792 + L1MD3 LINE L1 6768 6899 -1143 3 625 195 42 0 0 chr5 5246499 5246523 -147290736 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 625 486 70 0 0 chr5 5246523 5246594 -147290665 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 625 3149 163 77 112 chr5 5246619 5247428 -147289831 + RMER1A Other Other 239 1018 -12 3 625 205 22 42 62 chr5 5249539 5249587 -147287672 + (CAA)n Simple_repeat Simple_repeat 2 48 0 3 625 496 293 24 0 chr5 5250675 5250798 -147286461 - B3 SINE B2 -48 168 43 3 625 356 278 96 15 chr5 5250810 5250945 -147286314 - B3 SINE B2 -67 149 4 3 625 366 313 194 5 chr5 5251377 5251710 -147285549 + MLT1E1 LTR MaLR 296 678 -2 3 625 312 27 0 0 chr5 5251775 5251812 -147285447 + (CCA)n Simple_repeat Simple_repeat 3 39 0 3 625 351 0 0 0 chr5 5251812 5251851 -147285408 + (CAA)n Simple_repeat Simple_repeat 1 39 0 3 625 504 0 0 0 chr5 5253230 5253286 -147283973 + (GGAA)n Simple_repeat Simple_repeat 2 57 0 3 625 25 31 0 0 chr5 5253743 5253775 -147283484 + AT_rich Low_complexity Low_complexity 1 32 0 3 625 606 261 57 32 chr5 5253834 5253992 -147283267 - B3A SINE B2 -36 162 1 3 625 1546 302 78 31 chr5 5254863 5255643 -147281616 - Lx7 LINE L1 -2 7471 6646 3 625 25 31 0 0 chr5 5255707 5255739 -147281520 + AT_rich Low_complexity Low_complexity 1 32 0 3 625 22 35 0 0 chr5 5256339 5256368 -147280891 + AT_rich Low_complexity Low_complexity 1 29 0 3 625 180 268 0 0 chr5 5256784 5256825 -147280434 + MIR SINE MIR 103 143 -119 3 625 577 284 134 57 chr5 5257884 5258302 -147278957 - L1MA4 LINE L1 -382 5918 5469 3 625 324 214 14 0 chr5 5258872 5258942 -147278317 + MER5A1 DNA MER1_type 70 140 -26 3 625 240 86 0 0 chr5 5260163 5260198 -147277061 + (TTA)n Simple_repeat Simple_repeat 2 36 0 3 625 321 89 0 0 chr5 5262827 5262872 -147274387 + (CAT)n Simple_repeat Simple_repeat 1 45 0 3 625 708 241 89 37 chr5 5263233 5263565 -147273694 + L1MB4 LINE L1 5817 6183 0 3 625 193 345 0 68 chr5 5263654 5263713 -147273546 + L2b LINE L2 3252 3306 -69 3 625 204 122 0 0 chr5 5265797 5265838 -147271421 + (A)n Simple_repeat Simple_repeat 1 41 0 3 625 225 0 0 0 chr5 5266405 5266430 -147270829 + (T)n Simple_repeat Simple_repeat 1 25 0 3 625 303 19 17 69 chr5 5266523 5266581 -147270678 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 3 625 37 23 0 0 chr5 5267086 5267130 -147270129 + AT_rich Low_complexity Low_complexity 1 44 0 3 625 325 340 0 37 chr5 5267186 5267293 -147269966 - B4 SINE B4 -1 291 189 3 625 441 0 0 0 chr5 5267926 5267975 -147269284 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 3 625 288 202 135 21 chr5 5268335 5268431 -147268828 - B1F1 SINE Alu -2 147 41 3 625 628 262 44 44 chr5 5270432 5270680 -147266579 - L1MA8 LINE L1 -392 5899 5652 3 625 221 286 273 0 chr5 5271881 5271958 -147265301 + RSINE1 SINE B4 8 105 -60 3 625 319 200 58 78 chr5 5272212 5272315 -147264944 + MIR SINE MIR 31 131 -77 3 625 318 222 16 16 chr5 5272390 5272454 -147264805 + RSINE1 SINE B4 88 151 -14 3 625 282 56 0 0 chr5 5272466 5272502 -147264757 + (CATA)n Simple_repeat Simple_repeat 4 39 0 3 625 1294 54 0 0 chr5 5273355 5273502 -147263757 + B1_Mus1 SINE Alu 2 148 0 3 625 453 216 11 0 chr5 5275650 5275738 -147261521 + B1_Mm SINE Alu 56 144 -3 3 625 474 329 151 20 chr5 5276962 5277453 -147259806 + L2 LINE L2 1847 2401 -1018 3 625 353 211 54 135 chr5 5277639 5277787 -147259472 + MTD LTR MaLR 269 404 -15 3 625 2545 49 0 0 chr5 5278556 5278861 -147258398 + L1Md_F3 LINE L1 5282 5586 -297 3 625 7939 48 16 0 chr5 5278861 5279840 -147257419 + L1Md_F3 LINE L1 5587 6581 -3 3 625 445 284 47 0 chr5 5280218 5280345 -147256914 + B1F SINE Alu 17 149 0 3 625 5408 51 1 0 chr5 5280755 5281439 -147255820 + L1Md_F2 LINE L1 5911 6582 0 3 625 317 47 15 45 chr5 5282051 5282118 -147255141 + (TTTTTG)n Simple_repeat Simple_repeat 4 68 0 3 625 210 338 0 36 chr5 5284244 5284327 -147252932 + MIR SINE MIR 33 112 -150 3 625 591 191 140 62 chr5 5284664 5284843 -147252416 + B3A SINE B2 4 196 -2 3 625 369 306 9 0 chr5 5285687 5285795 -147251464 + PB1D10 SINE Alu 8 116 -1 3 625 310 295 124 0 chr5 5286027 5286132 -147251127 + PB1D7 SINE Alu 2 119 -1 3 625 558 204 7 47 chr5 5286583 5286732 -147250527 - Lx4B LINE L1 -4 7054 6912 3 625 739 231 19 0 chr5 5287388 5287544 -147249715 - B3 SINE B2 -6 210 52 3 625 310 213 53 0 chr5 5287576 5287651 -147249608 + PB1D10 SINE Alu 31 109 -8 3 625 265 280 140 0 chr5 5288073 5288216 -147249043 + L2a LINE L2 2857 3019 -400 3 625 256 329 0 0 chr5 5288325 5288404 -147248855 + L2a LINE L2 3311 3389 -37 3 625 744 185 0 0 chr5 5288531 5288661 -147248598 + B3 SINE B2 1 130 -86 3 625 35 0 0 0 chr5 5288681 5288716 -147248543 + AT_rich Low_complexity Low_complexity 1 35 0 3 625 969 69 0 0 chr5 5288884 5289014 -147248245 + L1_Mus1 LINE L1 6438 6567 0 3 625 206 314 65 14 chr5 5289465 5289586 -147247673 - MIR SINE MIR -100 168 37 3 625 602 236 28 0 chr5 5289740 5289884 -147247375 + B1_Mur1 SINE Alu 1 148 -1 3 625 21 0 0 0 chr5 5289979 5290000 -147247259 + AT_rich Low_complexity Low_complexity 1 21 0 3 625 369 0 0 0 chr5 5290771 5290812 -147246447 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 625 474 292 159 46 chr5 5293688 5294039 -147243220 - Lx8 LINE L1 -4 7469 7079 3 625 293 147 0 117 chr5 5294571 5294648 -147242611 + B1_Mur3 SINE Alu 82 149 0 3 625 23 33 0 0 chr5 5294940 5294970 -147242289 + AT_rich Low_complexity Low_complexity 1 30 0 3 625 1252 244 77 39 chr5 5295099 5295328 -147241931 - Lx8 LINE L1 -1 7472 7237 3 625 459 0 0 0 chr5 5295328 5295379 -147241880 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3 625 1252 244 77 39 chr5 5295379 5295606 -147241653 - Lx8 LINE L1 -237 7236 7001 3 625 250 294 18 81 chr5 5295746 5295857 -147241402 + B1F SINE Alu 1 104 -45 3 625 333 0 0 0 chr5 5295886 5295923 -147241336 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 3 625 1019 253 51 80 chr5 5296066 5296456 -147240803 + MTEa LTR MaLR 1 379 0 3 625 21 0 0 0 chr5 5297725 5297746 -147239513 + AT_rich Low_complexity Low_complexity 1 21 0 3 625 553 105 10 10 chr5 5298002 5298098 -147239161 + (TA)n Simple_repeat Simple_repeat 2 97 0 3 625 413 333 14 21 chr5 5298545 5298686 -147238573 - ID_B1 SINE B4 0 224 85 3 625 835 129 6 6 chr5 5299483 5299639 -147237620 + (TCC)n Simple_repeat Simple_repeat 2 157 0 3 625 378 138 31 0 chr5 5299671 5299736 -147237523 - B1_Mur3 SINE Alu -4 145 79 3 625 2002 88 18 13 chr5 5299736 5300063 -147237196 + IAPLTR2b LTR ERVK 1 356 -1 4 625 588 111 0 0 chr5 5303774 5303873 -147233386 + (TATG)n Simple_repeat Simple_repeat 2 100 0 4 625 258 291 65 46 chr5 5304622 5304730 -147232529 + MIR3 SINE MIR 64 173 -35 4 625 180 0 0 0 chr5 5304775 5304795 -147232464 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 625 4181 168 16 13 chr5 5304795 5305568 -147231691 + RMER13B LTR ERVK 8 782 -126 4 625 616 288 109 33 chr5 5305970 5306300 -147230959 + L1M4 LINE L1 4960 5314 -832 4 625 411 215 0 61 chr5 5306317 5306416 -147230843 + B1_Mm SINE Alu 17 109 -38 4 625 267 217 0 0 chr5 5306423 5306483 -147230776 + GA-rich Low_complexity Low_complexity 1 60 0 4 625 599 294 65 20 chr5 5306654 5306955 -147230304 + L1M4 LINE L1 5489 5805 -639 4 625 23 33 0 0 chr5 5307544 5307574 -147229685 + AT_rich Low_complexity Low_complexity 1 30 0 4 625 441 163 72 52 chr5 5308138 5308235 -147229024 - PB1D10 SINE Alu -18 99 1 4 625 1974 177 71 3 chr5 5308267 5308635 -147228624 - ORR1B1 LTR MaLR -1 393 1 4 625 423 0 0 0 chr5 5309519 5309566 -147227693 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 625 869 152 253 0 chr5 5310064 5310242 -147227017 + URR1A DNA MER1_type 1 223 -3 4 625 380 289 39 0 chr5 5310281 5310385 -147226874 + B1_Mur1 SINE Alu 12 119 -30 4 625 930 96 0 7 chr5 5310385 5310522 -147226737 - ORR1A4 LTR MaLR 0 329 194 4 625 912 278 76 30 chr5 5310595 5310988 -147226271 + L1MA6 LINE L1 5422 5832 -468 4 625 288 0 0 0 chr5 5311047 5311079 -147226180 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 625 227 306 26 45 chr5 5311086 5311240 -147226019 + GA-rich Low_complexity Low_complexity 2 152 0 4 625 1092 119 0 0 chr5 5311460 5311628 -147225631 + (GAAA)n Simple_repeat Simple_repeat 2 169 0 4 625 399 320 0 0 chr5 5311683 5311858 -147225401 + GA-rich Low_complexity Low_complexity 4 178 0 4 625 26 0 0 0 chr5 5311976 5312002 -147225257 + AT_rich Low_complexity Low_complexity 1 26 0 4 625 203 376 41 41 chr5 5312540 5312709 -147224550 + L2b LINE L2 3199 3367 -8 4 625 22 0 0 0 chr5 5312783 5312805 -147224454 + AT_rich Low_complexity Low_complexity 1 22 0 4 625 238 359 24 28 chr5 5315184 5315350 -147221909 - MIR SINE MIR -12 256 94 4 625 445 273 39 83 chr5 5315523 5315703 -147221556 + MTEa LTR MaLR 1 172 -207 4 625 225 132 0 0 chr5 5316209 5316247 -147221012 + (CACCAT)n Simple_repeat Simple_repeat 4 41 0 4 625 252 86 0 0 chr5 5316979 5317014 -147220245 + (CTAA)n Simple_repeat Simple_repeat 3 37 0 4 625 195 42 0 0 chr5 5317083 5317107 -147220152 + (CTAA)n Simple_repeat Simple_repeat 2 25 0 4 625 219 147 0 56 chr5 5317131 5317203 -147220056 + (CTAA)n Simple_repeat Simple_repeat 2 69 0 4 625 195 42 0 0 chr5 5317227 5317251 -147220008 + (CTAA)n Simple_repeat Simple_repeat 2 25 0 4 625 423 282 0 0 chr5 5317397 5317514 -147219745 + B1F2 SINE Alu 5 121 -28 4 625 2890 217 42 16 chr5 5317662 5318285 -147218974 - Lx6 LINE L1 -2 7458 6820 4 625 233 270 67 0 chr5 5318322 5318411 -147218848 + L1M4 LINE L1 5746 5840 -334 4 625 422 243 73 7 chr5 5319279 5319291 -147217968 + B1F SINE Alu 1 144 -3 4 625 538 213 8 8 chr5 5319291 5319414 -147217845 + ID_B1 SINE B4 94 216 -8 4 625 219 36 0 0 chr5 5319868 5319896 -147217363 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 625 374 155 14 0 chr5 5321384 5321455 -147215804 + RMER1A Other Other 958 1029 -1 4 625 1425 142 23 23 chr5 5321755 5322015 -147215244 - RMER1A Other Other -199 831 572 4 625 249 259 36 24 chr5 5322114 5322197 -147215062 + MIRb SINE MIR 64 147 -121 4 625 2542 43 61 50 chr5 5323677 5324019 -147213240 + ORR1A1 LTR MaLR 1 346 0 4 625 13613 66 16 2 chr5 5324019 5325785 -147211474 + ORR1A1-int LTR MaLR 1 1792 0 4 625 2866 44 12 0 chr5 5325785 5326127 -147211132 + ORR1A1 LTR MaLR 1 346 0 4 625 1176 286 106 13 chr5 5326658 5327132 -147210127 + MLT1F LTR MaLR 4 521 -27 4 625 787 255 38 5 chr5 5328094 5328303 -147208956 + B3 SINE B2 1 216 0 4 625 1263 94 0 0 chr5 5328434 5328614 -147208645 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 625 525 124 9 28 chr5 5328628 5328736 -147208523 + GA-rich Low_complexity Low_complexity 3 108 0 4 625 938 71 6 31 chr5 5328742 5328902 -147208357 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 4 625 8019 80 1 3 chr5 5329052 5330729 -147206530 - L1_Mus1 LINE L1 0 6567 4896 4 625 907 103 3 72 chr5 5332099 5332494 -147204765 + (CA)n Simple_repeat Simple_repeat 1 367 0 4 625 593 229 64 0 chr5 5333313 5333453 -147203806 - B1_Mur1 SINE Alu 0 149 1 4 625 912 250 39 67 chr5 5333885 5334168 -147203091 - ORR1D2 LTR MaLR -8 362 88 4 625 1134 216 69 92 chr5 5334177 5334649 -147202610 - MT2B LTR ERVL -22 579 1 4 625 456 274 0 0 chr5 5334649 5334751 -147202508 - ORR1D2 LTR MaLR -257 102 1 4 625 3411 40 0 2 chr5 5335106 5335503 -147201756 - MTA_Mm LTR MaLR 0 396 1 4 625 569 315 58 45 chr5 5336118 5336497 -147200762 - L1MB8 LINE L1 -16 6162 5779 4 625 455 280 90 5 chr5 5336515 5336727 -147200532 - L1MB8 LINE L1 -456 5722 5493 4 625 2390 124 44 5 chr5 5336821 5337226 -147200033 + BGLII LTR ERVK 1 421 0 4 625 424 228 0 0 chr5 5337681 5337760 -147199499 - B3A SINE B2 -119 79 1 4 625 892 308 4 0 chr5 5337984 5338221 -147199038 + B4A SINE B4 2 239 -53 4 625 207 0 0 0 chr5 5338240 5338263 -147198996 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 625 846 178 128 20 chr5 5338289 5338451 -147198808 + B3 SINE B2 1 166 -50 4 625 369 0 0 0 chr5 5338451 5338492 -147198767 + (CATA)n Simple_repeat Simple_repeat 3 43 0 4 625 846 178 128 20 chr5 5338492 5338524 -147198735 + B3 SINE B2 167 215 -1 4 625 259 373 14 81 chr5 5338560 5338770 -147198489 - Charlie2b DNA MER1_type -2552 230 35 4 625 423 0 0 0 chr5 5339806 5339853 -147197406 + (TTTTG)n Simple_repeat Simple_repeat 5 51 0 4 625 236 244 0 0 chr5 5339861 5339906 -147197353 - B1_Mur2 SINE Alu -32 117 73 4 625 218 56 0 27 chr5 5339915 5339952 -147197307 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 4 625 266 219 14 72 chr5 5339989 5340127 -147197132 - MER20B DNA MER1_type -121 662 533 4 625 232 159 0 0 chr5 5340490 5340534 -147196725 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 625 259 270 167 48 chr5 5341023 5341233 -147196026 - Charlie18a DNA MER1_type -60 282 48 4 625 368 285 62 0 chr5 5341265 5341409 -147195850 + MER5A1 DNA MER1_type 14 166 0 4 625 417 277 142 52 chr5 5343734 5344122 -147193137 - RLTR23 LTR ERV1 0 430 8 4 625 487 247 80 51 chr5 5344461 5344636 -147192623 + RMER5 LTR ERV1 199 378 -156 4 625 22 35 0 0 chr5 5345230 5345259 -147192000 + AT_rich Low_complexity Low_complexity 1 29 0 4 625 832 176 0 0 chr5 5346608 5346750 -147190509 - B1_Mus2 SINE Alu -4 143 2 4 625 286 248 53 120 chr5 5346631 5346764 -147190495 - MT2B LTR ERVL -323 278 155 4 625 703 233 31 61 chr5 5346875 5347136 -147190123 - Lx7 LINE L1 -2 7694 7442 4 625 575 229 25 54 chr5 5347124 5347319 -147189940 - L1_Mur3 LINE L1 -321 5562 5361 4 625 939 109 0 0 chr5 5347320 5347458 -147189801 + B1_Mus1 SINE Alu 11 148 0 4 625 207 100 0 0 chr5 5347458 5347488 -147189771 + (A)n Simple_repeat Simple_repeat 1 30 0 4 625 4258 155 5 40 chr5 5347488 5348254 -147189005 - L1_Mur3 LINE L1 -509 5371 4633 4 625 203 194 0 0 chr5 5348449 5348485 -147188774 + (TAA)n Simple_repeat Simple_repeat 2 37 0 4 625 21 57 0 0 chr5 5348942 5348977 -147188282 + AT_rich Low_complexity Low_complexity 1 35 0 4 625 20373 73 10 2 chr5 5349288 5351842 -147185417 + MERVL-int LTR ERVL 2782 5356 -129 4 625 289 186 14 41 chr5 5351962 5352035 -147185224 + ORR1A3-int LTR MaLR 567 637 -1326 4 625 329 26 0 0 chr5 5352037 5352076 -147185183 + MERVL-int LTR ERVL 5447 5485 0 4 625 3326 92 8 35 chr5 5352076 5352562 -147184697 + MT2C_Mm LTR ERVL 1 473 -2 4 625 865 201 106 6 chr5 5352780 5352794 -147184465 - B3 SINE B2 -17 199 186 4 625 1605 57 0 0 chr5 5352794 5352986 -147184273 - B2_Mm1t SINE B2 0 193 2 4 625 865 201 106 6 chr5 5352986 5353151 -147184108 - B3 SINE B2 -31 185 2 4 625 784 194 51 11 chr5 5353237 5353414 -147183845 + Lx5 LINE L1 6865 7048 -2 4 625 186 43 0 0 chr5 5353436 5353459 -147183800 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 625 468 0 0 0 chr5 5355570 5355622 -147181637 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 625 180 0 0 0 chr5 5355622 5355641 -147181618 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 625 563 174 53 8 chr5 5356056 5356189 -147181070 - RCHARR1 DNA MER1_type -15 959 821 4 625 1723 282 98 65 chr5 5356266 5356819 -147180440 - RCHARR1 DNA MER1_type -52 922 342 4 625 1172 37 0 0 chr5 5356819 5356955 -147180304 + B1_Mus1 SINE Alu 1 136 -12 4 625 840 92 0 0 chr5 5356956 5357075 -147180184 + (GGAAA)n Simple_repeat Simple_repeat 3 121 0 4 625 1723 282 98 65 chr5 5357075 5357406 -147179853 - RCHARR1 DNA MER1_type -633 341 7 4 625 627 233 103 43 chr5 5359461 5359645 -147177614 + B3A SINE B2 4 198 0 4 625 195 69 0 0 chr5 5360631 5360660 -147176599 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 625 717 45 0 0 chr5 5360902 5360991 -147176268 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 4 625 909 223 19 14 chr5 5361761 5361975 -147175284 + B3 SINE B2 1 215 -1 4 625 279 54 0 0 chr5 5362099 5362136 -147175123 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 625 524 281 20 27 chr5 5363988 5364138 -147173121 + B1F1 SINE Alu 1 149 0 4 625 1244 94 65 22 chr5 5364246 5364431 -147172828 + B2_Mm2 SINE B2 1 193 -2 4 625 392 0 21 0 chr5 5364504 5364552 -147172707 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 625 1025 234 5 9 chr5 5364593 5364809 -147172450 + B3 SINE B2 2 216 0 4 625 25 0 0 0 chr5 5365034 5365059 -147172200 + AT_rich Low_complexity Low_complexity 1 25 0 4 625 246 32 0 0 chr5 5365479 5365510 -147171749 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 625 252 0 0 0 chr5 5365828 5365856 -147171403 + (A)n Simple_repeat Simple_repeat 1 28 0 4 625 2292 161 9 83 chr5 5366006 5366461 -147170798 - MTC LTR MaLR 0 421 1 4 625 251 100 20 0 chr5 5366532 5366567 -147170692 + (TTTTTG)n Simple_repeat Simple_repeat 5 40 0 4 625 1223 41 0 13 chr5 5366567 5366716 -147170543 - B1_Mm SINE Alu 0 147 1 5 625 251 100 20 0 chr5 5366716 5366730 -147170529 + (TTTTTG)n Simple_repeat Simple_repeat 3 16 0 5 625 222 194 0 0 chr5 5368208 5368244 -147169015 + polypurine Low_complexity Low_complexity 4 39 0 5 625 405 0 0 0 chr5 5369519 5369564 -147167695 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 625 393 116 0 0 chr5 5370289 5370358 -147166901 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 625 531 82 0 0 chr5 5370645 5370718 -147166541 + (GGA)n Simple_repeat Simple_repeat 3 75 0 5 625 306 0 0 0 chr5 5370720 5370754 -147166505 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 5 625 207 343 18 18 chr5 5371571 5371681 -147165578 + MIR3 SINE MIR 98 207 -1 5 625 23 0 0 0 chr5 5371681 5371704 -147165555 + AT_rich Low_complexity Low_complexity 1 23 0 5 625 180 0 0 0 chr5 5371961 5371981 -147165278 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 5 626 258 32 0 0 chr5 5374355 5374386 -147162873 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 626 731 142 0 7 chr5 5374512 5374661 -147162598 + (GTGTG)n Simple_repeat Simple_repeat 2 149 0 5 626 553 248 0 0 chr5 5374676 5374789 -147162470 - PB1D7 SINE Alu -7 113 1 5 626 214 268 18 0 chr5 5376536 5376592 -147160667 - ID4 SINE ID -11 72 16 5 626 306 0 0 0 chr5 5378899 5378933 -147158326 + (TAA)n Simple_repeat Simple_repeat 3 36 0 5 626 207 0 0 0 chr5 5379333 5379356 -147157903 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 5 626 207 0 0 0 chr5 5380165 5380188 -147157071 + (CAGCG)n Simple_repeat Simple_repeat 1 23 0 5 626 36 23 0 0 chr5 5380364 5380407 -147156852 + GC_rich Low_complexity Low_complexity 1 43 0 5 626 21 57 0 0 chr5 5380568 5380603 -147156656 + GC_rich Low_complexity Low_complexity 1 35 0 5 626 49 52 0 0 chr5 5380637 5380714 -147156545 + GC_rich Low_complexity Low_complexity 1 77 0 5 626 268 162 38 0 chr5 5381754 5381834 -147155425 + (CAGAGA)n Simple_repeat Simple_repeat 6 88 0 5 626 306 361 0 16 chr5 5382286 5382469 -147154790 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 626 417 39 0 0 chr5 5383072 5383123 -147154136 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 626 1065 104 57 11 chr5 5383561 5383736 -147153523 + Lx3B LINE L1 6719 6901 -72 5 626 213 237 0 0 chr5 5384230 5384289 -147152970 + CT-rich Low_complexity Low_complexity 2 60 0 5 626 393 22 0 0 chr5 5384894 5384940 -147152319 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 626 237 33 0 0 chr5 5384940 5384969 -147152290 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 626 236 304 51 21 chr5 5385893 5386013 -147151246 - MIR SINE MIR -82 186 68 5 626 287 325 78 48 chr5 5386111 5386294 -147150965 - MLT1A0 LTR MaLR -1 364 216 5 626 429 240 43 72 chr5 5386478 5386617 -147150642 - B1_Mur4 SINE Alu 0 150 16 5 626 4370 145 31 18 chr5 5386980 5387816 -147149443 + Lx2 LINE L1 6034 6697 -300 5 626 820 272 78 71 chr5 5387825 5388483 -147148776 + HAL1 LINE L1 867 1528 -979 5 626 343 299 93 36 chr5 5389036 5389230 -147148029 - LTR52 LTR ERVL -209 212 8 5 626 384 312 136 67 chr5 5389265 5389639 -147147620 + HAL1 LINE L1 2029 2428 -79 5 626 4178 247 82 25 chr5 5390181 5391230 -147146029 + Lx9 LINE L1 6388 7489 -155 5 626 519 45 0 0 chr5 5391230 5391296 -147145963 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 626 477 0 0 0 chr5 5391296 5391348 -147145911 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 626 4178 247 82 25 chr5 5391348 5391476 -147145783 + Lx9 LINE L1 7490 7633 -11 5 626 875 282 66 17 chr5 5391639 5391989 -147145270 + L1MB3 LINE L1 5772 6138 -45 5 626 186 333 121 0 chr5 5392784 5392850 -147144409 - L2a LINE L2 -289 3086 3013 5 626 722 246 100 19 chr5 5393083 5393286 -147143973 + MER33 DNA MER1_type 32 256 -68 5 626 243 0 0 0 chr5 5393286 5393313 -147143946 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 626 722 246 100 19 chr5 5393313 5393378 -147143881 + MER33 DNA MER1_type 257 321 -3 5 626 5636 59 1 3 chr5 5393697 5394363 -147142896 + L1_Mus2 LINE L1 5902 6566 0 5 626 1308 254 114 54 chr5 5394378 5394483 -147142776 + Lx8 LINE L1 6840 6951 -522 5 626 480 18 0 0 chr5 5394483 5394540 -147142719 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 626 513 47 0 0 chr5 5394540 5394603 -147142656 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 626 1308 254 114 54 chr5 5394603 5394734 -147142525 + Lx8 LINE L1 6952 7090 -383 5 626 1434 123 0 5 chr5 5394734 5394930 -147142329 + B2_Mm2 SINE B2 1 195 0 5 626 1308 254 114 54 chr5 5394930 5395287 -147141972 + Lx8 LINE L1 7091 7470 -3 5 626 23 78 0 0 chr5 5395670 5395721 -147141538 + AT_rich Low_complexity Low_complexity 1 51 0 5 626 607 284 174 53 chr5 5395927 5396284 -147140975 - MTC LTR MaLR -20 401 2 5 626 333 299 73 27 chr5 5396372 5396482 -147140777 - HAL1-3A_ME LINE L1 -460 2398 2284 5 626 211 125 41 20 chr5 5396483 5396532 -147140727 + CT-rich Low_complexity Low_complexity 3 52 0 5 626 512 201 4 4 chr5 5396613 5396842 -147140417 + (TG)n Simple_repeat Simple_repeat 1 229 0 5 626 219 220 0 0 chr5 5397123 5397173 -147140086 + A-rich Low_complexity Low_complexity 1 50 0 5 626 482 103 13 0 chr5 5397181 5397259 -147140000 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 5 626 2342 168 133 20 chr5 5397303 5397944 -147139315 - L1_Mur3 LINE L1 -1421 4456 3647 5 626 2858 171 98 93 chr5 5397935 5398240 -147139019 - L1_Mur3 LINE L1 -3869 2011 1676 5 626 207 0 0 0 chr5 5398240 5398263 -147138996 + (TGG)n Simple_repeat Simple_repeat 1 23 0 5 626 2858 171 98 93 chr5 5398263 5398284 -147138975 - L1_Mur3 LINE L1 -4205 1675 1644 5 626 393 44 0 42 chr5 5398284 5398355 -147138904 + (TGG)n Simple_repeat Simple_repeat 1 68 0 5 626 2858 148 68 54 chr5 5398355 5399033 -147138226 - L1_Mur3 LINE L1 -4237 1643 989 5 626 424 239 49 109 chr5 5399106 5399289 -147137970 + B4 SINE B4 50 221 -71 5 626 779 144 29 7 chr5 5399154 5399294 -147137965 + B1F2 SINE Alu 7 149 0 5 626 280 188 131 0 chr5 5399667 5399728 -147137531 - B1_Mur3 SINE Alu -18 131 63 5 626 405 240 58 0 chr5 5399727 5399831 -147137428 - B1_Mur4 SINE Alu -30 120 11 5 626 381 309 25 15 chr5 5399929 5400126 -147137133 + L1MA9 LINE L1 6072 6270 -42 5 626 31 0 0 0 chr5 5400126 5400157 -147137102 + AT_rich Low_complexity Low_complexity 1 31 0 5 626 24 77 0 0 chr5 5400220 5400272 -147136987 + AT_rich Low_complexity Low_complexity 1 52 0 5 626 184 252 212 18 chr5 5400697 5400810 -147136449 + MIRb SINE MIR 126 260 -8 5 626 2136 246 48 8 chr5 5401322 5401802 -147135457 - Lx5 LINE L1 -368 6682 6184 5 626 2392 179 55 39 chr5 5402181 5402691 -147134568 + RLTR12B LTR ERVK 2 519 -9 5 626 470 220 8 99 chr5 5403013 5403144 -147134115 - PB1D9 SINE Alu -1 119 1 5 626 1134 57 168 12 chr5 5403162 5403323 -147133936 - B2_Mm2 SINE B2 -9 186 1 5 626 23 33 0 0 chr5 5403368 5403398 -147133861 + AT_rich Low_complexity Low_complexity 1 30 0 5 626 36295 45 2 0 chr5 5403403 5408589 -147128670 + L1Md_T LINE L1 299 5589 -297 5 626 9024 31 1 0 chr5 5408590 5409585 -147127674 + L1Md_T LINE L1 5590 6585 0 5 626 1019 307 56 37 chr5 5409606 5410036 -147127223 - MER45B DNA Tip100 -245 795 358 5 626 21 57 0 0 chr5 5410100 5410135 -147127124 + AT_rich Low_complexity Low_complexity 1 35 0 5 626 1051 327 16 3 chr5 5410296 5410682 -147126577 - Lx9 LINE L1 -174 7470 7080 5 626 457 369 39 25 chr5 5410830 5411033 -147126226 - MER45B DNA Tip100 -827 213 8 5 626 284 342 103 26 chr5 5411070 5411226 -147126033 - LTR33 LTR ERVL -337 178 11 5 626 765 61 0 0 chr5 5411354 5411453 -147125806 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 5 626 736 293 52 43 chr5 5412307 5412653 -147124606 - MLT1A0 LTR MaLR 0 365 17 5 626 198 103 0 0 chr5 5412772 5412801 -147124458 + (TAAG)n Simple_repeat Simple_repeat 1 29 0 5 626 227 329 61 0 chr5 5413005 5413087 -147124172 + MIRb SINE MIR 162 248 -20 5 626 1101 131 3 0 chr5 5413707 5414022 -147123237 + (TG)n Simple_repeat Simple_repeat 1 316 0 5 626 252 162 25 0 chr5 5414273 5414322 -147122937 + L2c LINE L2 3338 3421 -5 5 626 264 269 230 31 chr5 5414972 5415133 -147122126 - L1MB8 LINE L1 -108 6070 5878 5 626 378 0 0 0 chr5 5415138 5415180 -147122079 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 626 263 364 21 7 chr5 5415426 5415567 -147121692 - L1MB7 LINE L1 -27 6157 6015 5 626 833 65 0 0 chr5 5415722 5415830 -147121429 + B1_Mus2 SINE Alu 40 147 0 5 626 31 0 0 0 chr5 5415830 5415861 -147121398 + AT_rich Low_complexity Low_complexity 1 31 0 5 626 544 295 30 22 chr5 5415866 5416098 -147121161 - L1MB7 LINE L1 -18 6166 5933 5 626 228 100 0 0 chr5 5416379 5416419 -147120840 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 5 626 2025 87 11 0 chr5 5416541 5416818 -147120441 - L1_Mus2 LINE L1 -1377 4506 4227 5 626 10360 81 0 3 chr5 5416811 5418897 -147118362 + L1_Mus2 LINE L1 4480 6560 -6 5 626 309 243 55 52 chr5 5418989 5419093 -147118166 - B3A SINE B2 -70 125 25 5 626 317 268 123 46 chr5 5420188 5420407 -147116852 - ORR1E LTR MaLR -105 254 19 5 626 600 53 0 0 chr5 5420734 5420810 -147116449 + (TC)n Simple_repeat Simple_repeat 2 77 0 5 626 847 281 18 59 chr5 5420810 5421029 -147116230 - B4 SINE B4 -1 291 82 5 626 183 80 0 0 chr5 5421029 5421054 -147116205 + (TC)n Simple_repeat Simple_repeat 1 25 0 5 626 560 50 12 0 chr5 5421056 5421136 -147116123 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 5 626 303 233 11 11 chr5 5421140 5421227 -147116032 + (TA)n Simple_repeat Simple_repeat 2 88 0 5 626 792 307 74 0 chr5 5421270 5421514 -147115745 + MLT1B LTR MaLR 23 284 -106 5 626 329 298 118 65 chr5 5421786 5421955 -147115304 + B3 SINE B2 38 215 -1 5 626 2209 172 51 0 chr5 5421957 5422311 -147114948 + ORR1D1 LTR MaLR 1 372 -2 5 626 196 53 26 26 chr5 5423172 5423211 -147114048 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 626 751 278 123 12 chr5 5424081 5424325 -147112934 - MTEa LTR MaLR -7 372 102 5 626 276 213 33 0 chr5 5424331 5424392 -147112867 + ID_B1 SINE B4 149 211 -13 5 626 7139 121 23 4 chr5 5424414 5424534 -147112725 - Lx LINE L1 0 6654 6536 6 626 288 0 0 0 chr5 5424534 5424566 -147112693 + (CCCA)n Simple_repeat Simple_repeat 1 32 0 6 626 7139 107 13 2 chr5 5424566 5425816 -147111443 - Lx LINE L1 -119 6535 5262 6 626 219 88 0 0 chr5 5426139 5426173 -147111086 + (CAAAAA)n Simple_repeat Simple_repeat 6 39 0 6 626 214 217 68 68 chr5 5426530 5426604 -147110655 - MIR3 SINE MIR -22 186 113 6 626 274 291 89 63 chr5 5426786 5426944 -147110315 - MLT1L LTR MaLR -299 311 150 6 626 275 318 67 13 chr5 5428182 5428332 -147108927 - L1MA10 LINE L1 -2 6332 6175 6 626 322 238 183 13 chr5 5428391 5428544 -147108715 - L1ME1 LINE L1 -239 5940 5762 6 626 301 203 27 68 chr5 5428581 5428655 -147108604 - B1_Mur2 SINE Alu -56 93 23 6 626 2138 152 60 22 chr5 5428782 5429232 -147108027 - RMER6A LTR ERVK -7 749 283 6 626 247 316 64 124 chr5 5431103 5431385 -147105874 + MARNA DNA Mariner 249 513 -73 6 626 29 60 0 0 chr5 5432434 5432484 -147104775 + AT_rich Low_complexity Low_complexity 1 50 0 6 626 8602 25 1 0 chr5 5432699 5433928 -147103331 - L1Md_T LINE L1 -2 6580 5351 6 626 628 103 11 0 chr5 5434052 5434139 -147103120 + B3 SINE B2 1 88 -128 6 626 1305 150 57 19 chr5 5434694 5434959 -147102300 + Lx5 LINE L1 6722 6996 -54 6 626 354 45 0 0 chr5 5434969 5435013 -147102246 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 6 626 23 33 0 0 chr5 5435554 5435584 -147101675 + AT_rich Low_complexity Low_complexity 1 30 0 6 626 2373 218 30 0 chr5 5435627 5436086 -147101173 + Lx5 LINE L1 6578 7050 0 6 626 564 193 154 32 chr5 5436130 5436253 -147101006 + B1_Mur4 SINE Alu 13 150 0 6 626 1273 34 0 20 chr5 5438242 5438391 -147098868 + B1_Mus2 SINE Alu 2 147 0 6 626 1557 229 256 39 chr5 5439197 5439242 -147098017 - Lx2 LINE L1 0 7008 6977 6 626 1226 54 0 26 chr5 5439242 5439383 -147097876 + B1_Mus1 SINE Alu 2 140 -8 6 626 335 41 0 20 chr5 5439383 5439433 -147097826 + (CAA)n Simple_repeat Simple_repeat 2 50 0 6 626 2202 147 103 16 chr5 5439442 5439940 -147097319 - Lx2 LINE L1 -32 6976 6347 6 626 275 273 89 20 chr5 5440205 5440306 -147096953 - MIRm SINE MIR -84 184 77 6 626 515 290 190 59 chr5 5441030 5441283 -147095976 + B4A SINE B4 1 286 -6 6 626 375 23 0 0 chr5 5441326 5441370 -147095889 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 626 464 0 18 0 chr5 5441822 5441878 -147095381 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 626 342 0 0 0 chr5 5441893 5441931 -147095328 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 626 406 61 30 0 chr5 5442070 5442136 -147095123 + (TC)n Simple_repeat Simple_repeat 2 69 0 6 626 234 0 0 0 chr5 5442136 5442162 -147095097 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 626 268 289 55 11 chr5 5442292 5442383 -147094876 - MER117 DNA MER1_type -54 143 49 6 626 336 48 0 0 chr5 5444243 5444285 -147092974 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 626 333 0 0 0 chr5 5444285 5444321 -147092938 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 626 303 312 82 14 chr5 5444928 5445074 -147092185 + MER58B DNA MER1_type 178 333 -8 6 626 2158 178 26 14 chr5 5445399 5445703 -147091556 - MTC LTR MaLR 0 421 111 6 626 926 146 116 6 chr5 5445703 5445863 -147091396 + B2_Mm2 SINE B2 2 180 -15 6 626 498 17 0 0 chr5 5445863 5445922 -147091337 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 6 626 926 146 116 6 chr5 5445922 5445933 -147091326 + B2_Mm2 SINE B2 181 191 -4 6 626 2158 178 26 14 chr5 5445933 5446044 -147091215 - MTC LTR MaLR -311 110 1 6 626 383 240 105 14 chr5 5446167 5446394 -147090865 - L1M2 LINE L1 -704 5596 5334 6 626 26 50 0 0 chr5 5446437 5446477 -147090782 + AT_rich Low_complexity Low_complexity 1 40 0 6 626 4485 57 7 0 chr5 5446876 5447439 -147089820 + L1_Mus2 LINE L1 6000 6566 0 6 626 1003 266 22 40 chr5 5447590 5447864 -147089395 + B4A SINE B4 1 269 -23 6 626 258 105 0 0 chr5 5447885 5447923 -147089336 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 626 660 326 61 10 chr5 5448103 5448301 -147088958 - ID_B1 SINE B4 -5 219 12 6 626 495 249 127 0 chr5 5448325 5448538 -147088721 - L1M2 LINE L1 -3772 2371 2132 6 626 876 255 200 0 chr5 5448568 5449082 -147088177 + L1M3 LINE L1 2398 3014 -3126 6 626 7132 54 6 1 chr5 5449175 5450138 -147087121 + L1_Mm LINE L1 3830 4797 -1086 6 626 640 303 57 0 chr5 5450764 5450939 -147086320 - B3 SINE B2 -25 191 7 6 626 892 107 20 48 chr5 5450940 5451087 -147086172 - B1_Mus1 SINE Alu -5 143 1 6 626 23 33 0 0 chr5 5451153 5451183 -147086076 + AT_rich Low_complexity Low_complexity 1 30 0 6 626 39 84 0 0 chr5 5452426 5452521 -147084738 + AT_rich Low_complexity Low_complexity 1 95 0 6 626 276 282 13 0 chr5 5452555 5452633 -147084626 - ID4 SINE ID 0 83 5 6 626 240 182 65 0 chr5 5453152 5453229 -147084030 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 626 483 194 0 0 chr5 5453260 5453358 -147083901 + (TA)n Simple_repeat Simple_repeat 1 98 0 6 626 543 107 0 0 chr5 5453457 5453541 -147083718 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 626 779 189 36 7 chr5 5454125 5454264 -147082995 - B1_Mur3 SINE Alu 0 149 7 6 626 330 277 0 65 chr5 5454171 5454279 -147082980 - MT2B LTR ERVL -345 256 156 6 626 388 308 28 0 chr5 5454716 5454823 -147082436 - PB1D9 SINE Alu -9 111 2 6 626 610 196 7 42 chr5 5455282 5455426 -147081833 - RMER1C Other Other -1 1341 1203 6 626 313 170 18 36 chr5 5455426 5455536 -147081723 + GA-rich Low_complexity Low_complexity 1 108 0 6 626 1591 131 11 32 chr5 5455541 5455818 -147081441 - RMER1C Other Other -127 1215 945 6 626 180 200 0 0 chr5 5456912 5456957 -147080302 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 626 363 364 114 65 chr5 5457601 5458030 -147079229 + LTR16A1 LTR ERVL 6 455 -1 6 626 503 240 39 47 chr5 5458327 5458354 -147078905 + B3A SINE B2 1 27 -171 6 626 2695 76 18 5 chr5 5458354 5458737 -147078522 + L1_Mus4 LINE L1 6247 6634 -2 6 626 503 240 39 47 chr5 5458737 5458836 -147078423 + B3A SINE B2 28 126 -72 6 626 250 322 129 34 chr5 5458856 5459065 -147078194 - MIRb SINE MIR -23 245 17 6 626 554 41 14 0 chr5 5459507 5459580 -147077679 + (TC)n Simple_repeat Simple_repeat 2 75 0 6 626 255 352 58 58 chr5 5459714 5459922 -147077337 + MLT1K-int LTR MaLR 1099 1306 -81 6 626 835 187 80 6 chr5 5460206 5460408 -147076851 + Lx3C LINE L1 6786 7058 0 6 626 231 351 153 13 chr5 5460561 5460711 -147076548 + MLT1K LTR MaLR 411 581 -14 6 626 798 250 65 0 chr5 5462073 5462273 -147074986 + Lx7 LINE L1 6839 7051 -645 6 626 847 304 41 48 chr5 5462834 5463128 -147074131 - B4 SINE B4 0 292 1 6 626 374 269 43 87 chr5 5464566 5464819 -147072440 + L1MC5 LINE L1 7316 7557 -404 6 626 374 192 14 14 chr5 5465066 5465140 -147072119 - PB1 SINE Alu -12 115 42 6 626 221 22 64 21 chr5 5465786 5465833 -147071426 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 626 22 35 0 0 chr5 5466054 5466083 -147071176 + AT_rich Low_complexity Low_complexity 1 29 0 6 626 764 232 70 35 chr5 5466149 5466350 -147070909 - B3 SINE B2 -4 212 5 6 626 22 0 0 0 chr5 5466430 5466452 -147070807 + AT_rich Low_complexity Low_complexity 1 22 0 6 626 1905 170 25 76 chr5 5466824 5467218 -147070041 + ORR1D1 LTR MaLR 1 374 0 6 626 36903 7 0 0 chr5 5467355 5472713 -147064546 + L1Md_A LINE L1 228 5586 -297 6 626 9012 5 0 0 chr5 5472713 5473709 -147063550 + L1Md_A LINE L1 5587 6582 0 6 626 36903 7 0 0 chr5 5473709 5473729 -147063530 + L1Md_A LINE L1 5587 5606 -277 6 626 457 272 107 20 chr5 5474483 5474633 -147062626 + RSINE1 SINE B4 3 165 0 6 626 601 255 85 12 chr5 5474662 5474908 -147062351 - L1MD3 LINE L1 -123 7872 7609 6 626 297 0 0 0 chr5 5474922 5474955 -147062304 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 626 240 329 78 56 chr5 5474978 5475248 -147062011 - B4 SINE B4 -16 276 1 6 626 198 330 48 19 chr5 5475283 5475388 -147061871 + L2 LINE L2 2095 2202 -1217 6 626 2692 164 43 4 chr5 5476300 5476809 -147060450 + RLTR24 LTR ERV1 1 529 0 6 626 1447 69 21 0 chr5 5477626 5477815 -147059444 + B2_Mm2 SINE B2 3 195 0 6 626 1292 76 38 5 chr5 5478423 5478609 -147058650 - B2_Mm1t SINE B2 0 193 2 6 626 449 86 29 0 chr5 5480294 5480364 -147056895 + (CATA)n Simple_repeat Simple_repeat 3 74 0 6 626 779 294 65 4 chr5 5480778 5481024 -147056235 + LTR16B LTR ERVL 203 463 0 6 626 719 293 94 50 chr5 5481110 5481473 -147055786 - MLT1B LTR MaLR -5 385 7 6 626 213 39 0 0 chr5 5481526 5481552 -147055707 + (T)n Simple_repeat Simple_repeat 1 26 0 6 626 321 26 0 0 chr5 5482220 5482258 -147055001 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 626 265 292 105 32 chr5 5482258 5482382 -147054877 - LTR33A LTR ERVL -387 133 1 6 626 1164 221 75 58 chr5 5484231 5484576 -147052683 - MTE2b LTR MaLR 0 379 29 6 626 698 301 135 18 chr5 5484970 5485251 -147052008 - MER90a LTR ERV1 -3 611 298 6 626 575 262 24 0 chr5 5485858 5485984 -147051275 + ID_B1 SINE B4 86 214 -10 6 626 198 0 0 0 chr5 5486124 5486146 -147051113 + (T)n Simple_repeat Simple_repeat 1 22 0 6 626 944 155 60 22 chr5 5486165 5486350 -147050909 - B2_Mm2 SINE B2 -3 192 1 6 626 210 67 67 0 chr5 5487200 5487245 -147050014 + (CAA)n Simple_repeat Simple_repeat 2 49 0 6 626 1019 157 3 1 chr5 5487527 5488212 -147049047 + (TG)n Simple_repeat Simple_repeat 1 686 0 6 626 556 285 18 90 chr5 5488215 5488381 -147048878 - RSINE1 SINE B4 0 165 12 6 626 24 0 0 0 chr5 5488529 5488553 -147048706 + AT_rich Low_complexity Low_complexity 1 24 0 6 626 300 230 0 39 chr5 5489597 5489663 -147047596 + PB1D10 SINE Alu 41 104 -13 6 626 189 0 0 0 chr5 5489663 5489684 -147047575 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 6 626 689 188 13 53 chr5 5489767 5489919 -147047340 + B1_Mur2 SINE Alu 3 148 -1 7 626 550 244 101 22 chr5 5489962 5490100 -147047159 - ID_B1 SINE B4 -46 178 30 7 626 1125 50 0 54 chr5 5490166 5490315 -147046944 + B1_Mm SINE Alu 1 141 -6 7 626 422 114 14 0 chr5 5490315 5490385 -147046874 + (GA)n Simple_repeat Simple_repeat 1 71 0 7 626 182 299 23 0 chr5 5490367 5490454 -147046805 + GA-rich Low_complexity Low_complexity 2 90 0 7 626 450 299 0 0 chr5 5490452 5490626 -147046633 + A-rich Low_complexity Low_complexity 1 174 0 7 626 358 369 40 13 chr5 5490678 5490829 -147046430 + HAL1-3A_ME LINE L1 2284 2438 -420 7 626 391 112 60 60 chr5 5490833 5490966 -147046293 + GA-rich Low_complexity Low_complexity 3 135 0 7 626 896 121 28 17 chr5 5490965 5491141 -147046118 + A-rich Low_complexity Low_complexity 2 179 0 7 626 1447 58 21 0 chr5 5491150 5491339 -147045920 + B2_Mm2 SINE B2 1 193 -2 7 626 299 305 55 37 chr5 5491383 5491492 -147045767 - PB1D10 SINE Alu -2 115 5 7 626 292 330 85 63 chr5 5491924 5492147 -147045112 - ORR1E LTR MaLR -111 248 21 7 626 706 230 149 0 chr5 5492327 5492488 -147044771 - B3 SINE B2 -29 187 3 7 626 3935 61 10 17 chr5 5492764 5493282 -147043977 + L1_Mus2 LINE L1 6050 6563 -3 7 626 359 298 79 56 chr5 5493841 5494019 -147043240 + B3A SINE B2 1 182 -16 7 626 279 150 0 0 chr5 5494049 5494109 -147043150 + (TCC)n Simple_repeat Simple_repeat 2 61 0 7 626 691 186 8 8 chr5 5494135 5494260 -147042999 - B1_Mus1 SINE Alu -2 146 22 7 626 24 0 0 0 chr5 5494424 5494448 -147042811 + AT_rich Low_complexity Low_complexity 1 24 0 7 626 316 86 0 65 chr5 5495196 5495258 -147042001 + ORR1B1 LTR MaLR 5 95 -299 7 626 650 207 0 0 chr5 5495269 5495390 -147041869 - RMER1B Other Other -799 267 147 7 626 376 315 9 69 chr5 5495691 5495807 -147041452 - PB1D10 SINE Alu -8 109 1 7 626 1239 307 110 34 chr5 5495899 5496113 -147041146 - MER82 DNA MER2_type -17 636 408 7 626 441 0 0 0 chr5 5496113 5496162 -147041097 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 626 312 27 0 0 chr5 5496172 5496209 -147041050 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 626 1239 307 110 34 chr5 5496209 5496573 -147040686 - MER82 DNA MER2_type -251 402 3 7 626 2196 166 66 8 chr5 5496710 5497105 -147040154 + MTC LTR MaLR 1 418 -3 7 626 265 336 108 8 chr5 5497841 5497970 -147039289 - MER45A DNA Tip100 -12 166 25 7 626 225 0 0 0 chr5 5498064 5498089 -147039170 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 626 3645 196 182 46 chr5 5498118 5499179 -147038080 - Lx7 LINE L1 -144 7552 6348 7 626 315 115 19 0 chr5 5499179 5499231 -147038028 - Lx7 LINE L1 -1296 6400 6348 7 626 311 115 19 0 chr5 5499231 5499283 -147037976 - Lx7 LINE L1 -1296 6400 6348 7 626 295 135 19 0 chr5 5499283 5499335 -147037924 - Lx7 LINE L1 -1296 6400 6348 7 626 289 135 19 0 chr5 5499335 5499387 -147037872 - Lx7 LINE L1 -1296 6400 6348 7 626 311 115 19 0 chr5 5499387 5499439 -147037820 - Lx7 LINE L1 -1296 6400 6348 7 626 1294 169 35 8 chr5 5499439 5499696 -147037563 - Lx7 LINE L1 -1296 6400 6137 7 626 2476 26 16 0 chr5 5499696 5499999 -147037260 + MTA_Mm LTR MaLR 1 308 -88 7 626 773 22 0 0 chr5 5500000 5500090 -147037169 + MTA_Mm LTR MaLR 307 396 0 1 626 2579 158 56 19 chr5 5500092 5500772 -147036487 - Lx7 LINE L1 -1557 6139 5419 2 626 252 0 0 0 chr5 5500796 5500824 -147036435 + (T)n Simple_repeat Simple_repeat 1 28 0 3 626 1239 62 0 0 chr5 5500824 5500969 -147036290 - B1_Mus2 SINE Alu 0 147 3 4 626 2236 183 91 14 chr5 5501010 5501525 -147035734 + RLTR12A LTR ERVK 1 555 -13 5 626 357 70 86 0 chr5 5501528 5501588 -147035671 - L1_Mur3 LINE L1 -2559 5436 5338 6 626 515 201 11 5 chr5 5501585 5501690 -147035569 + L1_Rod LINE L1 5608 5776 -413 7 626 223 28 56 0 chr5 5501918 5501954 -147035305 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 8 626 403 115 51 0 chr5 5502483 5502561 -147034698 + CT-rich Low_complexity Low_complexity 3 84 0 9 626 558 146 401 35 chr5 5502562 5502704 -147034555 - B2_Mm2 SINE B2 0 195 2 1 626 458 346 38 0 chr5 5503054 5503213 -147034046 - MER63B DNA AcHobo 0 436 272 1 626 327 266 123 9 chr5 5503274 5503388 -147033871 + B1_Mur1 SINE Alu 1 127 -22 1 626 919 216 91 25 chr5 5503518 5503717 -147033542 + B3 SINE B2 1 212 -4 1 626 420 276 92 6 chr5 5503814 5503978 -147033281 - L1MC4 LINE L1 -967 7075 6898 1 626 3171 61 14 0 chr5 5504568 5504996 -147032263 + RLTR44E LTR ERVK 1 434 -18 1 627 741 197 76 0 chr5 5505646 5505778 -147031481 - B1_Mur1 SINE Alu -6 143 2 1 627 372 298 107 8 chr5 5506960 5507082 -147030177 + B1_Mur1 SINE Alu 7 140 -9 1 627 341 278 0 22 chr5 5508569 5508661 -147028598 + B1F SINE Alu 24 113 -36 1 627 501 62 0 0 chr5 5508701 5508766 -147028493 + (GGGA)n Simple_repeat Simple_repeat 1 65 0 1 627 365 205 24 57 chr5 5509223 5509347 -147027912 + MIR SINE MIR 110 229 -33 2 627 181 272 190 17 chr5 5509494 5509610 -147027649 + MER5A DNA MER1_type 41 176 -13 2 627 902 185 126 45 chr5 5511957 5512155 -147025104 - B3 SINE B2 -1 215 2 2 627 236 333 116 23 chr5 5512316 5512445 -147024814 + L2c LINE L2 3247 3387 0 2 627 323 269 26 0 chr5 5513417 5513495 -147023764 + ID4_ SINE ID 3 82 -1 2 627 3203 175 111 4 chr5 5515495 5516257 -147021002 - Lx4A LINE L1 0 7058 6188 2 627 280 219 62 0 chr5 5516266 5516362 -147020897 - Lx7 LINE L1 0 7696 7595 2 627 245 281 47 0 chr5 5516478 5516542 -147020717 - Lx7 LINE L1 -465 7231 7165 2 627 382 250 124 26 chr5 5517029 5517227 -147020032 + MTEa LTR MaLR 114 351 -28 2 627 1565 64 37 0 chr5 5517265 5517452 -147019807 - B2_Mm2 SINE B2 -1 194 1 2 627 228 200 19 39 chr5 5518167 5518219 -147019040 + PB1 SINE Alu 51 101 -26 2 627 515 0 0 51 chr5 5518231 5518310 -147018949 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 627 251 197 98 0 chr5 5518542 5518603 -147018656 - PB1D10 SINE Alu -1 116 50 3 627 21 0 0 0 chr5 5519455 5519476 -147017783 + AT_rich Low_complexity Low_complexity 1 21 0 3 627 549 210 109 31 chr5 5520177 5520305 -147016954 - B1_Mur1 SINE Alu -11 138 1 3 627 827 231 25 5 chr5 5520360 5520556 -147016703 + RLTR20A LTR ERVK 149 348 -186 3 627 31635 69 1 41 chr5 5520568 5521047 -147016212 + L1Md_F2 LINE L1 1352 1742 -4141 3 627 8644 45 1 7 chr5 5521047 5522049 -147015210 + L1Md_F2 LINE L1 5587 6582 0 3 627 31635 69 1 41 chr5 5522049 5525980 -147011279 + L1Md_F2 LINE L1 1743 5585 -298 3 627 8490 37 30 1 chr5 5525982 5526949 -147010310 + L1Md_F2 LINE L1 5588 6582 0 3 627 932 206 77 18 chr5 5526952 5527174 -147010085 + RLTR20A LTR ERVK 307 541 0 3 627 1111 212 81 38 chr5 5527175 5527687 -147009572 - MYSERV6-int LTR ERVK -760 5790 5406 3 627 248 247 79 45 chr5 5527691 5527780 -147009479 - RMER4B LTR ERVK -45 540 449 3 627 428 256 22 65 chr5 5527785 5527960 -147009299 - MYSERV6-int LTR ERVK -359 5421 5100 3 627 238 367 16 48 chr5 5528492 5528618 -147008641 - RMER4A LTR ERVK -341 125 4 3 627 1021 257 157 38 chr5 5528770 5529248 -147008011 - L1_Mur3 LINE L1 -1504 4376 3842 4 627 296 299 28 38 chr5 5529251 5529315 -147007944 - L1MEg LINE L1 -4642 1442 1383 4 627 7010 46 2 4 chr5 5529315 5530129 -147007130 - L1Md_F2 LINE L1 -10 6572 5760 4 627 4434 85 26 14 chr5 5530129 5531177 -147006082 - L1Md_A LINE L1 -4021 1862 807 4 627 1137 50 0 7 chr5 5531176 5531318 -147005941 - Lx2A LINE L1 -1258 5750 5610 4 627 815 182 41 54 chr5 5531318 5531557 -147005702 - MYSERV6-int LTR ERVK -4544 4415 4224 3 627 187 122 41 0 chr5 5531571 5531620 -147005639 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 627 385 164 0 29 chr5 5531638 5531686 -147005573 + Lx5 LINE L1 5601 5648 -1402 4 627 6057 173 42 21 chr5 5531686 5532773 -147004486 + Lx2B LINE L1 5883 6992 -8 4 627 385 164 0 29 chr5 5532773 5532793 -147004466 + Lx5 LINE L1 5649 5667 -1383 4 627 3910 175 40 14 chr5 5532815 5533581 -147003678 - MYSERV6-int LTR ERVK -4740 4219 3434 3 627 284 300 14 109 chr5 5533777 5533931 -147003328 + B3A SINE B2 1 126 -72 4 627 1340 158 124 56 chr5 5534165 5534487 -147002772 + ORR1A4 LTR MaLR 43 386 -8 4 627 9015 161 76 92 chr5 5534491 5534807 -147002452 + ORR1A4-int LTR MaLR 1 324 -1639 4 627 1271 62 0 0 chr5 5534807 5534953 -147002306 + B1_Mus1 SINE Alu 1 146 -2 5 627 360 0 0 0 chr5 5534953 5534993 -147002266 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 627 9015 161 76 92 chr5 5534993 5536670 -147000589 + ORR1A4-int LTR MaLR 325 1962 -1 4 627 1695 171 16 118 chr5 5536671 5537036 -147000223 + ORR1A4 LTR MaLR 2 329 0 4 627 226 276 141 10 chr5 5537264 5537363 -146999896 - RLTR10 LTR ERVK -181 209 98 5 627 30 45 0 0 chr5 5537580 5537624 -146999635 + AT_rich Low_complexity Low_complexity 1 44 0 5 627 780 277 14 14 chr5 5537628 5537837 -146999422 + B3 SINE B2 1 209 -7 5 627 251 384 15 8 chr5 5537865 5537999 -146999260 - B1_Mur1 SINE Alu -8 141 7 5 627 201 74 0 0 chr5 5538089 5538116 -146999143 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 5 627 21 0 0 0 chr5 5538809 5538830 -146998429 + AT_rich Low_complexity Low_complexity 1 21 0 5 627 768 231 134 42 chr5 5538838 5539145 -146998114 - L1MA8 LINE L1 -135 6156 5822 5 627 29 0 0 0 chr5 5539481 5539510 -146997749 + AT_rich Low_complexity Low_complexity 1 29 0 5 627 202 283 0 0 chr5 5539608 5539654 -146997605 + MIRm SINE MIR 229 274 -2 6 627 2223 148 55 3 chr5 5540529 5540894 -146996365 + ORR1C2 LTR MaLR 1 384 0 6 627 842 188 136 26 chr5 5541124 5541315 -146995944 + B3 SINE B2 1 212 -4 6 627 591 232 49 7 chr5 5541509 5541652 -146995607 + B1F1 SINE Alu 1 149 0 6 627 365 291 130 11 chr5 5541660 5541837 -146995422 - B3A SINE B2 0 198 1 6 627 205 86 0 28 chr5 5541864 5541900 -146995359 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 627 545 294 71 0 chr5 5542083 5542209 -146995050 + ID_B1 SINE B4 83 217 -7 6 627 567 296 34 7 chr5 5544397 5544543 -146992716 - RSINE1 SINE B4 0 165 16 6 627 945 251 152 30 chr5 5545234 5545662 -146991597 - L1MC1 LINE L1 -187 6146 5667 6 627 225 154 0 0 chr5 5545995 5546034 -146991225 + (CAA)n Simple_repeat Simple_repeat 2 40 0 6 627 498 312 62 7 chr5 5546100 5546302 -146990957 + B3A SINE B2 8 216 0 7 627 531 281 96 0 chr5 5546759 5546894 -146990365 - RSINE1 SINE B4 -17 148 1 7 627 239 232 23 58 chr5 5548269 5548356 -146988903 - RMER4A LTR ERVK -358 108 25 7 627 495 178 168 0 chr5 5548459 5548566 -146988693 + B1_Mus1 SINE Alu 2 126 -22 7 627 614 136 68 0 chr5 5548577 5548680 -146988579 - B1_Mus1 SINE Alu 0 148 39 7 627 325 244 155 72 chr5 5548949 5549130 -146988129 + B3A SINE B2 2 197 -1 7 627 938 221 45 25 chr5 5549180 5549380 -146987879 - B3 SINE B2 -11 205 2 7 627 374 214 285 6 chr5 5549532 5549711 -146987548 - Lx9 LINE L1 -2 7642 7414 7 627 241 150 0 24 chr5 5549719 5549760 -146987499 - Lx9 LINE L1 -792 6852 6813 7 627 511 147 0 0 chr5 5549776 5549851 -146987408 - PB1D9 SINE Alu -11 109 35 7 627 1228 216 13 0 chr5 5549857 5550093 -146987166 - Lx9 LINE L1 -833 6811 6573 7 627 395 272 70 83 chr5 5550110 5550411 -146986848 - L1MC5 LINE L1 -386 7575 7279 7 627 457 271 134 34 chr5 5550567 5550716 -146986543 + RSINE1 SINE B4 2 165 0 8 627 582 237 34 0 chr5 5550847 5550965 -146986294 + B3 SINE B2 91 212 -4 8 627 2729 218 90 60 chr5 5551199 5551966 -146985293 + L1_Rod LINE L1 445 1234 -6374 8 627 6114 198 62 60 chr5 5551979 5553406 -146983853 + L1_Rod LINE L1 1326 2808 -3039 8 627 3513 38 0 0 chr5 5553406 5553801 -146983458 + L1Md_T LINE L1 6188 6582 0 8 627 6114 198 62 60 chr5 5553801 5553832 -146983427 + L1_Rod LINE L1 2809 2814 -3033 8 627 806 194 7 34 chr5 5553832 5553981 -146983278 + B1_Mur3 SINE Alu 4 148 -1 8 627 6114 198 62 60 chr5 5553981 5554129 -146983130 + L1_Rod LINE L1 2815 2937 -2910 8 627 336 238 11 67 chr5 5554130 5554220 -146983039 - B3 SINE B2 -127 89 5 8 627 243 0 0 0 chr5 5554231 5554258 -146983001 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 627 261 214 36 0 chr5 5554354 5554410 -146982849 + Tigger2b DNA MER2_type 613 670 -56 8 627 542 238 0 166 chr5 5554424 5554605 -146982654 + MTE2a LTR MaLR 1 151 -228 8 627 1272 172 114 8 chr5 5554607 5554853 -146982406 - ORR1D1 LTR MaLR -100 274 3 8 627 210 37 0 0 chr5 5554944 5554971 -146982288 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 9 627 249 159 0 0 chr5 5554984 5555028 -146982231 + GA-rich Low_complexity Low_complexity 1 44 0 9 627 206 32 0 31 chr5 5555508 5555540 -146981719 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 9 627 576 250 42 0 chr5 5555802 5555922 -146981337 + RSINE1 SINE B4 11 135 -30 9 627 1082 93 7 26 chr5 5557818 5557973 -146979286 - B2_Mm2 SINE B2 -29 166 15 9 627 194 267 47 62 chr5 5559755 5559819 -146977440 - L4 LINE RTE -794 1235 1173 9 627 24 32 0 0 chr5 5560909 5560940 -146976319 + AT_rich Low_complexity Low_complexity 1 31 0 9 627 715 285 17 11 chr5 5561126 5561307 -146975952 + B3A SINE B2 1 182 -16 9 627 22 0 0 0 chr5 5561368 5561390 -146975869 + AT_rich Low_complexity Low_complexity 1 22 0 9 627 1442 302 79 38 chr5 5561700 5561825 -146975434 - Lx8 LINE L1 0 7473 7336 9 627 186 43 0 0 chr5 5561825 5561848 -146975411 + (TCC)n Simple_repeat Simple_repeat 3 25 0 1 627 1442 302 79 38 chr5 5561848 5562480 -146974779 - Lx8 LINE L1 -138 7335 6686 9 627 286 279 32 85 chr5 5562552 5562646 -146974613 + B1F SINE Alu 10 98 -51 1 627 682 206 194 32 chr5 5562657 5562843 -146974416 + B3 SINE B2 1 216 0 1 627 398 248 193 7 chr5 5564581 5564731 -146972528 + MTE2a LTR MaLR 202 379 0 1 627 363 186 125 67 chr5 5565088 5565192 -146972067 - B1_Mur4 SINE Alu 0 150 41 1 627 21 57 0 0 chr5 5565262 5565297 -146971962 + AT_rich Low_complexity Low_complexity 1 35 0 1 627 240 143 0 0 chr5 5566105 5566147 -146971112 + (CAT)n Simple_repeat Simple_repeat 2 43 0 1 627 23 0 0 0 chr5 5566469 5566492 -146970767 + AT_rich Low_complexity Low_complexity 1 23 0 1 627 405 0 0 0 chr5 5567233 5567278 -146969981 + (TTA)n Simple_repeat Simple_repeat 3 47 0 1 627 329 320 20 0 chr5 5568593 5568746 -146968513 + L1MA6 LINE L1 5845 6000 -300 1 627 793 247 45 5 chr5 5568896 5569095 -146968164 + B3 SINE B2 1 207 -9 1 627 333 0 0 0 chr5 5570211 5570248 -146967011 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 627 540 291 0 50 chr5 5570251 5570392 -146966867 - B3A SINE B2 -50 148 15 1 627 1122 76 14 0 chr5 5570541 5570685 -146966574 - B1_Mus1 SINE Alu 0 148 3 1 627 1404 272 82 27 chr5 5570687 5571249 -146966010 + Lx8 LINE L1 6843 7435 -38 1 627 733 287 102 46 chr5 5571342 5571691 -146965568 + MLT2B1 LTR ERVL 7 359 -55 1 627 261 83 0 0 chr5 5571691 5571727 -146965532 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 627 432 0 0 0 chr5 5571727 5571774 -146965485 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 627 397 291 103 113 chr5 5571774 5571822 -146965437 + MLT2B1 LTR ERVL 360 400 -14 1 627 351 305 94 26 chr5 5571849 5572041 -146965218 - L1M5 LINE L1 -667 5497 5293 1 627 24 0 0 0 chr5 5572123 5572147 -146965112 + AT_rich Low_complexity Low_complexity 1 24 0 1 627 235 221 176 0 chr5 5572154 5572222 -146965037 - ID4_ SINE ID -2 81 2 1 627 21 0 0 0 chr5 5572222 5572243 -146965016 + AT_rich Low_complexity Low_complexity 1 21 0 1 627 383 291 76 10 chr5 5572307 5572505 -146964754 - L1M5 LINE L1 -1048 5098 4888 1 627 23 54 0 0 chr5 5572508 5572545 -146964714 + AT_rich Low_complexity Low_complexity 1 37 0 1 627 219 170 0 0 chr5 5572810 5572857 -146964402 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 627 892 65 24 0 chr5 5573595 5573718 -146963541 - B1_Mm SINE Alu 0 147 22 1 627 584 253 101 11 chr5 5576494 5576682 -146960577 - B3 SINE B2 -11 205 1 1 627 860 269 75 26 chr5 5576995 5577262 -146959997 + B4A SINE B4 2 281 -11 1 627 752 178 15 7 chr5 5577539 5577675 -146959584 + B1_Mur4 SINE Alu 3 139 -11 1 627 318 351 59 13 chr5 5578098 5578251 -146959008 - L4 LINE RTE -900 1129 970 1 627 466 295 45 0 chr5 5578381 5578493 -146958766 + RSINE1 SINE B4 3 119 -46 1 627 528 111 0 0 chr5 5578502 5578583 -146958676 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 627 311 123 35 17 chr5 5578594 5578652 -146958607 - U2 snRNA snRNA -129 59 1 1 627 21 36 0 0 chr5 5578858 5578886 -146958373 + AT_rich Low_complexity Low_complexity 1 28 0 1 627 317 138 147 0 chr5 5578979 5579088 -146958171 + Lx5 LINE L1 6926 7050 0 1 627 191 237 31 78 chr5 5579961 5580025 -146957234 - L2c LINE L2 -44 3343 3283 1 627 1229 165 5 14 chr5 5580249 5580464 -146956795 - B3 SINE B2 0 216 4 1 627 24 67 0 0 chr5 5581074 5581119 -146956140 + AT_rich Low_complexity Low_complexity 1 45 0 1 627 594 250 14 14 chr5 5582705 5582843 -146954416 + B1_Mus2 SINE Alu 5 142 -5 1 627 572 227 108 8 chr5 5584145 5584274 -146952985 + B4 SINE B4 11 152 -140 1 627 26 30 0 0 chr5 5585240 5585273 -146951986 + AT_rich Low_complexity Low_complexity 1 33 0 1 627 663 301 43 29 chr5 5585817 5586097 -146951162 - Lx8 LINE L1 -48 7425 7142 1 627 25 51 0 0 chr5 5586307 5586346 -146950913 + AT_rich Low_complexity Low_complexity 1 39 0 1 627 747 207 46 6 chr5 5586674 5586849 -146950410 + Lx4B LINE L1 6876 7057 -1 1 627 216 284 90 0 chr5 5587421 5587488 -146949771 - BC1_Mm scRNA scRNA -65 87 15 1 627 675 229 7 0 chr5 5587607 5587746 -146949513 + B1_Mur3 SINE Alu 5 144 -5 1 627 206 32 32 0 chr5 5587746 5587777 -146949482 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 627 670 241 10 70 chr5 5587817 5588018 -146949241 - B3A SINE B2 -7 191 3 1 627 710 315 35 0 chr5 5590159 5590362 -146946897 + B3 SINE B2 1 210 -6 1 627 2551 309 54 10 chr5 5590390 5591358 -146945901 + Lx8 LINE L1 6189 7198 -275 1 627 1720 134 72 10 chr5 5591384 5591677 -146945582 - ORR1B1 LTR MaLR -8 386 76 1 627 901 257 35 27 chr5 5591664 5591924 -146945335 + MT2B LTR ERVL 290 551 -50 1 627 223 261 0 0 chr5 5591925 5591990 -146945269 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 627 1277 124 75 14 chr5 5592016 5592228 -146945031 + URR1B DNA MER1_type 1 225 0 1 627 916 147 0 22 chr5 5592273 5592412 -146944847 + B1_Mur3 SINE Alu 1 136 -13 1 627 414 0 0 0 chr5 5592412 5592458 -146944801 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 627 227 257 51 51 chr5 5592764 5592842 -146944417 - MIR SINE MIR -63 199 122 1 627 714 201 27 14 chr5 5593445 5593591 -146943668 + B1_Mur2 SINE Alu 2 149 0 1 627 291 315 0 0 chr5 5594050 5594161 -146943098 + (TG)n Simple_repeat Simple_repeat 1 111 0 1 627 2682 55 55 3 chr5 5594210 5594556 -146942703 + RLTR10B2 LTR ERVK 2 365 0 1 627 1186 282 16 28 chr5 5594999 5595320 -146941939 + MTE2a LTR MaLR 63 379 0 1 627 317 192 232 40 chr5 5595332 5595457 -146941802 + MLT2B2 LTR ERVL 414 562 0 1 627 25 0 0 0 chr5 5595862 5595887 -146941372 + AT_rich Low_complexity Low_complexity 1 25 0 1 627 563 246 109 22 chr5 5596226 5596409 -146940850 + B3 SINE B2 1 199 -17 1 627 614 235 92 0 chr5 5596949 5597102 -146940157 + B3 SINE B2 42 208 -8 1 627 33569 53 5 8 chr5 5597245 5602348 -146934911 + L1Md_F3 LINE L1 502 5586 -297 1 627 8068 40 1 5 chr5 5602349 5603334 -146933925 + L1Md_F3 LINE L1 5588 6568 -16 1 627 21 0 0 0 chr5 5603415 5603436 -146933823 + AT_rich Low_complexity Low_complexity 1 21 0 1 627 541 275 86 48 chr5 5603511 5603824 -146933435 + L1ME2 LINE L1 5636 5960 -204 1 627 1651 197 41 5 chr5 5604798 5605522 -146931737 + Lx6 LINE L1 892 1581 -4296 1 627 10958 183 57 39 chr5 5605499 5608334 -146928925 + Lx6 LINE L1 2251 5136 -741 1 627 398 210 13 95 chr5 5608338 5608496 -146928763 + Lx6 LINE L1 5961 6105 -1355 1 627 2345 264 92 23 chr5 5608494 5609640 -146927619 + Lx6 LINE L1 5998 7414 -46 1 627 33 80 0 0 chr5 5609685 5609760 -146927499 + AT_rich Low_complexity Low_complexity 1 75 0 1 627 21 71 0 0 chr5 5609929 5609971 -146927288 + AT_rich Low_complexity Low_complexity 1 42 0 1 627 1130 61 0 52 chr5 5610293 5610448 -146926811 + B1_Mus2 SINE Alu 1 147 0 1 627 484 263 69 44 chr5 5611002 5611161 -146926098 + RSINE1 SINE B4 3 165 0 1 627 189 0 0 0 chr5 5611167 5611188 -146926071 + (CATA)n Simple_repeat Simple_repeat 2 22 0 1 627 23 0 0 0 chr5 5611189 5611212 -146926047 + AT_rich Low_complexity Low_complexity 1 23 0 1 627 386 274 38 0 chr5 5612092 5612198 -146925061 + PB1D9 SINE Alu 1 110 -10 1 627 452 302 181 26 chr5 5612616 5612881 -146924378 - MER2 DNA MER2_type -37 308 3 1 627 559 211 38 107 chr5 5613180 5613201 -146924058 + B4 SINE B4 76 223 -69 1 627 1047 58 7 0 chr5 5613201 5613339 -146923920 + B1_Mus1 SINE Alu 8 146 -2 1 627 1022 52 15 0 chr5 5613339 5613475 -146923784 + (GAAA)n Simple_repeat Simple_repeat 2 139 0 1 627 1883 73 0 26 chr5 5613876 5614142 -146923117 + L1_Mus2 LINE L1 6308 6566 0 1 627 306 0 0 0 chr5 5614212 5614246 -146923013 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 627 665 266 31 25 chr5 5614446 5614608 -146922651 + B3A SINE B2 36 198 0 1 627 319 302 84 56 chr5 5615054 5615268 -146921991 - L1M2 LINE L1 -985 5158 4939 1 627 486 232 167 18 chr5 5615457 5615571 -146921688 - ID_B1 SINE B4 -7 217 87 1 627 327 278 0 0 chr5 5616086 5616158 -146921101 - PB1 SINE Alu -29 98 27 1 627 226 292 36 36 chr5 5616219 5616329 -146920930 + PB1D10 SINE Alu 3 112 -37 1 627 199 311 167 46 chr5 5616527 5616635 -146920624 + L2a LINE L2 3302 3422 -4 1 627 653 288 5 35 chr5 5616815 5617013 -146920246 - B3A SINE B2 -5 193 2 1 627 192 40 0 0 chr5 5617553 5617578 -146919681 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 627 293 55 0 0 chr5 5617909 5617971 -146919288 + L1_Mus2 LINE L1 6524 6636 0 1 627 219 286 14 14 chr5 5618548 5618619 -146918640 + ID2 SINE ID 2 72 -11 1 627 189 74 0 0 chr5 5618883 5618910 -146918349 + (TATAA)n Simple_repeat Simple_repeat 2 28 0 1 627 625 197 98 82 chr5 5620117 5620311 -146916948 + B3A SINE B2 2 198 0 1 627 407 362 82 46 chr5 5620360 5620835 -146916424 + L1MEf LINE L1 82 573 -5521 1 627 395 265 0 0 chr5 5620924 5621007 -146916252 + ID4 SINE ID 1 83 0 1 627 639 311 92 25 chr5 5621210 5621731 -146915528 + L1MEf LINE L1 1097 1652 -4548 1 627 590 288 68 85 chr5 5622087 5622394 -146914865 + MLT1A0 LTR MaLR 19 320 -45 1 627 1151 246 99 36 chr5 5623146 5623538 -146913721 - MTD LTR MaLR -13 406 1 1 627 22 56 0 0 chr5 5623705 5623741 -146913518 + AT_rich Low_complexity Low_complexity 1 36 0 1 627 797 237 75 0 chr5 5623743 5623929 -146913330 - B3 SINE B2 -13 203 4 1 627 414 0 0 0 chr5 5623929 5623975 -146913284 + (TTTTA)n Simple_repeat Simple_repeat 5 50 0 2 627 461 213 151 32 chr5 5623976 5624102 -146913157 - B1_Mur1 SINE Alu -8 141 1 2 627 1431 224 121 27 chr5 5624524 5625043 -146912216 + RLTR12A LTR ERVK 1 568 0 2 627 1940 214 63 22 chr5 5625119 5625612 -146911647 - RLTR11A2 LTR ERVK -14 513 1 2 627 448 305 60 78 chr5 5626263 5626480 -146910779 - MER58A DNA MER1_type 0 224 12 2 627 200 88 34 34 chr5 5626530 5626589 -146910670 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2 627 2918 90 3 160 chr5 5627077 5627202 -146910057 - L1VL4 LINE L1 -5473 829 729 2 627 3730 57 0 10 chr5 5627202 5627681 -146909578 - L1Md_F2 LINE L1 -17 6565 6092 2 627 539 57 29 0 chr5 5627681 5627751 -146909508 + tRNA-Lys-AAG tRNA tRNA 2 73 -3 2 627 2918 90 3 160 chr5 5627751 5628231 -146909028 - L1VL4 LINE L1 -5574 728 319 2 627 609 279 18 18 chr5 5628265 5628429 -146908830 - RSINE1 SINE B4 -1 164 1 2 627 3934 221 69 42 chr5 5628832 5629613 -146907646 + MYSERV16_I-int LTR ERVK 857 1623 -703 2 627 2854 54 56 15 chr5 5629613 5630008 -146907251 + RLTR10A LTR ERVK 1 411 0 2 627 3934 221 69 42 chr5 5630008 5630459 -146906800 + MYSERV16_I-int LTR ERVK 1624 2122 -204 2 627 36569 11 3 7 chr5 5630460 5635877 -146901382 + L1Md_A LINE L1 197 5586 -297 2 78 8622 22 1 0 chr5 5635878 5636870 -146900389 + L1Md_A LINE L1 5588 6580 -2 2 628 412 259 28 56 chr5 5636889 5637069 -146900190 + MYSERV6-int LTR ERVK 8784 8958 -1 2 628 2069 107 61 12 chr5 5637070 5637412 -146899847 + RLTR15 LTR ERVK 1 359 0 2 628 2471 96 28 35 chr5 5637533 5637584 -146899675 + L1_Mus2 LINE L1 6169 6219 -347 2 628 419 35 18 0 chr5 5637584 5637641 -146899618 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 628 2471 96 28 35 chr5 5637641 5637989 -146899270 + L1_Mus2 LINE L1 6220 6564 -2 2 628 877 231 123 28 chr5 5638927 5639212 -146898047 + RLTR20B1 LTR ERVK 29 340 -223 2 628 286 279 12 12 chr5 5639202 5639282 -146897977 + RLTR20B1 LTR ERVK 455 534 0 2 628 23 0 0 0 chr5 5639387 5639410 -146897849 + AT_rich Low_complexity Low_complexity 1 23 0 2 628 1265 26 0 0 chr5 5639543 5639694 -146897565 + B2_Mm2 SINE B2 2 152 -43 2 628 221 0 0 33 chr5 5639694 5639724 -146897535 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2 628 244 391 0 22 chr5 5640965 5641054 -146896205 + MIR SINE MIR 8 94 -168 2 628 1163 69 0 0 chr5 5641108 5641252 -146896007 + B1_Mus2 SINE Alu 4 147 0 2 628 25 0 0 0 chr5 5642025 5642050 -146895209 + AT_rich Low_complexity Low_complexity 1 25 0 2 628 180 179 0 0 chr5 5642842 5642881 -146894378 + T-rich Low_complexity Low_complexity 1 39 0 2 628 1461 69 16 0 chr5 5642895 5643083 -146894176 + B2_Mm2 SINE B2 1 191 -4 2 628 351 170 268 0 chr5 5643149 5643261 -146893998 - Lx3B LINE L1 -6 6967 6826 2 628 3479 102 139 9 chr5 5643391 5643924 -146893335 + RLTR1D LTR ERV1 4 605 0 2 628 279 271 0 0 chr5 5644044 5644103 -146893156 + Lx8 LINE L1 7165 7223 -250 2 628 183 42 0 0 chr5 5646170 5646194 -146891065 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 628 425 277 192 49 chr5 5647638 5647904 -146889355 + RMER15 LTR ERVL 272 575 0 2 628 1133 319 80 36 chr5 5647945 5648674 -146888585 + RMER15-int LTR ERVL 83 829 -4170 2 628 868 301 55 26 chr5 5648805 5649112 -146888147 - RMER15 LTR ERVL -5 570 255 2 628 878 277 43 84 chr5 5649235 5649653 -146887606 - RMER15-int LTR ERVL -5 4994 4594 2 628 19097 183 57 53 chr5 5649940 5652014 -146885245 + Lx3_Mus LINE L1 7 2457 -3420 2 628 1202 121 6 0 chr5 5652014 5652188 -146885071 + B2_Mm1t SINE B2 5 179 -14 2 628 19097 174 36 78 chr5 5652188 5652254 -146885005 + Lx3_Mus LINE L1 2458 2515 -3362 2 628 296 83 340 67 chr5 5652254 5652360 -146884899 + B2_Mm2 SINE B2 47 181 -14 2 628 19097 174 36 78 chr5 5652360 5653701 -146883558 + Lx3_Mus LINE L1 2516 3694 -2183 2 628 4973 52 27 2 chr5 5653701 5654335 -146882924 + L1_Mus2 LINE L1 5917 6566 0 2 628 19097 169 63 57 chr5 5654335 5656949 -146880310 + Lx3_Mus LINE L1 3695 6467 -542 2 628 541 307 67 20 chr5 5657955 5658254 -146879005 - Lx8 LINE L1 -6 7467 7155 2 628 2614 178 58 21 chr5 5658473 5659006 -146878253 + Lx3_Mus LINE L1 6493 7045 -5 2 628 333 316 43 38 chr5 5659140 5659324 -146877935 - L2a LINE L2 -262 3164 2980 2 628 264 331 40 67 chr5 5659642 5659791 -146877468 - L2b LINE L2 -3 3372 3228 2 628 1054 77 0 0 chr5 5660053 5660196 -146877063 + B1_Mus1 SINE Alu 6 148 0 2 628 297 327 69 44 chr5 5660621 5660781 -146876478 + MER5A1 DNA MER1_type 3 166 0 2 628 1099 190 95 124 chr5 5661270 5661618 -146875641 + Lx5 LINE L1 6710 7047 -3 2 628 186 43 0 0 chr5 5661619 5661642 -146875617 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 628 1054 96 7 20 chr5 5661978 5662127 -146875132 - B1_Mus1 SINE Alu 0 148 2 2 628 327 231 115 41 chr5 5662325 5662447 -146874812 - RSINE1 SINE B4 -31 134 4 2 628 21 36 0 0 chr5 5663679 5663707 -146873552 + GC_rich Low_complexity Low_complexity 1 28 0 2 628 423 119 0 0 chr5 5664545 5664612 -146872647 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 628 294 258 0 0 chr5 5665279 5665341 -146871918 - MER5A DNA MER1_type -116 73 12 2 628 236 278 125 36 chr5 5665465 5665577 -146871682 + MER5A1 DNA MER1_type 1 122 -44 2 628 24 0 0 0 chr5 5666350 5666374 -146870885 + AT_rich Low_complexity Low_complexity 1 24 0 2 628 790 241 188 40 chr5 5666963 5667261 -146869998 - MLT1B LTR MaLR -48 342 1 2 628 232 284 81 0 chr5 5667872 5667946 -146869313 + MER53 DNA hAT 113 192 -1 2 628 25 51 0 0 chr5 5669752 5669791 -146867468 + AT_rich Low_complexity Low_complexity 1 39 0 2 628 620 103 35 0 chr5 5669957 5670073 -146867186 + (TC)n Simple_repeat Simple_repeat 1 120 0 2 628 397 136 0 57 chr5 5670073 5670143 -146867116 - B1_Mur2 SINE Alu -6 143 78 2 628 25 31 0 0 chr5 5670199 5670231 -146867028 + AT_rich Low_complexity Low_complexity 1 32 0 2 628 438 20 0 0 chr5 5670728 5670779 -146866480 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 628 615 130 6 38 chr5 5671250 5671410 -146865849 + (TATG)n Simple_repeat Simple_repeat 3 157 0 2 628 654 167 0 0 chr5 5671432 5671540 -146865719 - B1_Mur1 SINE Alu -41 108 1 2 628 358 257 124 0 chr5 5672417 5672522 -146864737 + MIR SINE MIR 75 192 -70 2 628 479 250 0 10 chr5 5674189 5674290 -146862969 + PB1D10 SINE Alu 12 111 -6 2 628 267 31 0 0 chr5 5674426 5674458 -146862801 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 628 382 305 56 56 chr5 5674973 5674989 -146862270 + B4 SINE B4 70 85 -207 2 628 577 221 7 106 chr5 5674989 5675131 -146862128 + B1_Mur3 SINE Alu 1 128 -21 2 628 230 127 0 68 chr5 5675154 5675213 -146862046 + A-rich Low_complexity Low_complexity 6 60 0 2 628 743 212 7 7 chr5 5676958 5677105 -146860154 + B1_Mur1 SINE Alu 3 149 0 2 628 8084 68 21 1 chr5 5678052 5679140 -146858119 - L1_Mus4 LINE L1 -2 6634 5525 2 628 1619 193 31 17 chr5 5679423 5679776 -146857483 - Lx2B LINE L1 -2 6998 6641 2 628 231 36 0 0 chr5 5680918 5680946 -146856313 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2 628 322 294 24 0 chr5 5681059 5681144 -146856115 + B1F SINE Alu 1 87 -62 2 628 746 298 66 63 chr5 5681207 5681540 -146855719 + MTEa LTR MaLR 1 334 -45 2 628 802 199 161 6 chr5 5681651 5681813 -146855446 - B3A SINE B2 -11 187 1 2 628 186 71 0 0 chr5 5683094 5683122 -146854137 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2 628 280 258 96 22 chr5 5683277 5683412 -146853847 - MER5A1 DNA MER1_type -21 145 1 2 628 236 170 19 0 chr5 5683540 5683593 -146853666 + GA-rich Low_complexity Low_complexity 1 54 0 2 628 741 203 27 27 chr5 5683792 5683926 -146853333 + B1_Mur1 SINE Alu 1 137 -12 2 628 201 39 0 0 chr5 5683926 5683952 -146853307 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 2 628 741 203 27 27 chr5 5683952 5683964 -146853295 + B1_Mur1 SINE Alu 138 147 -2 2 628 405 0 0 0 chr5 5684827 5684872 -146852387 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 628 261 0 0 0 chr5 5684872 5684900 -146852359 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 628 180 163 0 0 chr5 5684903 5684946 -146852313 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 628 4999 85 5 5 chr5 5684981 5685640 -146851619 - L1_Mus3 LINE L1 0 6638 5980 2 628 333 351 30 30 chr5 5685671 5685806 -146851453 - RSINE1 SINE B4 -29 136 2 2 628 279 104 0 0 chr5 5686515 5686563 -146850696 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 628 887 176 186 6 chr5 5686608 5686791 -146850468 - B3 SINE B2 0 216 1 2 628 271 254 0 0 chr5 5687664 5687727 -146849532 + ID_B1 SINE B4 81 143 -81 2 628 267 197 63 101 chr5 5687754 5687833 -146849426 + PB1D9 SINE Alu 36 111 -9 2 628 251 104 0 20 chr5 5687833 5687882 -146849377 + (TGGGGG)n Simple_repeat Simple_repeat 1 48 0 2 628 389 243 367 14 chr5 5688044 5688259 -146849000 - B4A SINE B4 0 292 2 2 628 354 265 79 57 chr5 5688810 5688950 -146848309 - MER5B DNA MER1_type -1 177 35 2 628 299 269 43 50 chr5 5689437 5689578 -146847681 - MER5A1 DNA MER1_type -10 156 17 2 628 33 66 0 0 chr5 5689612 5689673 -146847586 + AT_rich Low_complexity Low_complexity 1 61 0 2 628 1730 128 46 13 chr5 5690017 5690335 -146846924 + ORR1C2 LTR MaLR 1 384 0 2 628 189 107 0 0 chr5 5690419 5690447 -146846812 + (A)n Simple_repeat Simple_repeat 1 28 0 2 628 845 161 29 0 chr5 5690787 5690924 -146846335 - B1_Mus1 SINE Alu -5 143 3 2 628 197 146 24 0 chr5 5691398 5691439 -146845820 + L2 LINE L2 2424 2465 -954 2 628 578 186 113 0 chr5 5691544 5691674 -146845585 - B1_Mur1 SINE Alu -3 146 2 2 628 293 232 58 0 chr5 5691787 5691856 -146845403 - PB1 SINE Alu -8 119 47 2 628 360 0 0 0 chr5 5692304 5692344 -146844915 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 628 180 0 0 0 chr5 5692858 5692878 -146844381 + (CCCCAG)n Simple_repeat Simple_repeat 1 20 0 2 628 198 0 0 0 chr5 5693284 5693306 -146843953 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 628 2591 83 3 3 chr5 5696011 5696337 -146840922 - ORR1A2 LTR MaLR 0 327 2 2 628 1909 168 45 50 chr5 5696701 5697078 -146840181 + ORR1C1 LTR MaLR 4 378 0 3 628 472 182 222 0 chr5 5697213 5697312 -146839947 - B1_Mur2 SINE Alu -20 129 9 3 628 870 188 0 26 chr5 5697399 5697552 -146839707 + B1_Mur2 SINE Alu 1 149 0 3 628 901 267 39 5 chr5 5697685 5697892 -146839367 + B3 SINE B2 1 214 -2 3 628 554 224 206 6 chr5 5698217 5698392 -146838867 + B3 SINE B2 2 211 -5 3 628 3025 118 27 7 chr5 5699029 5699471 -146837788 + RLTR11B LTR ERVK 3 453 0 3 628 325 96 376 24 chr5 5699759 5699844 -146837415 + PB1D9 SINE Alu 5 119 -1 3 628 234 0 0 0 chr5 5699963 5699989 -146837270 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 628 358 306 71 9 chr5 5699993 5700105 -146837154 + PB1D7 SINE Alu 1 119 -1 3 628 657 0 0 0 chr5 5700330 5700403 -146836856 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 628 191 114 29 0 chr5 5700406 5700441 -146836818 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 628 287 301 19 0 chr5 5700482 5700585 -146836674 - Lx8 LINE L1 -219 7254 7150 3 628 1722 42 0 0 chr5 5701604 5701796 -146835463 - B2_Mm1t SINE B2 -1 192 1 3 628 1353 14 0 0 chr5 5702401 5702547 -146834712 - B1_Mus2 SINE Alu 0 147 2 3 628 1687 37 0 0 chr5 5702557 5702744 -146834515 - B2_Mm1a SINE B2 -5 188 2 3 628 613 213 43 14 chr5 5703003 5703141 -146834118 + B1_Mur2 SINE Alu 5 146 -3 3 628 541 228 57 8 chr5 5704439 5704563 -146832696 + RSINE1 SINE B4 3 132 -33 3 628 423 0 0 0 chr5 5704565 5704612 -146832647 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 628 819 244 76 25 chr5 5704631 5704908 -146832351 + L1MB7 LINE L1 5857 6147 -37 3 628 431 267 35 91 chr5 5705351 5705549 -146831710 + RLTR23 LTR ERV1 244 430 0 3 628 247 228 0 34 chr5 5705611 5705670 -146831589 - PB1D9 SINE Alu -52 68 12 3 628 301 262 25 0 chr5 5705818 5705898 -146831361 + Lx8 LINE L1 7383 7464 -9 3 628 1045 218 29 0 chr5 5705944 5706150 -146831109 - B3 SINE B2 0 216 5 3 628 540 0 0 0 chr5 5706919 5706979 -146830280 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 628 1057 229 5 14 chr5 5707035 5707248 -146830011 + B3 SINE B2 1 211 -5 3 628 23 0 0 0 chr5 5707252 5707275 -146829984 + AT_rich Low_complexity Low_complexity 1 23 0 3 628 213 94 0 0 chr5 5707581 5707613 -146829646 + (CCCCG)n Simple_repeat Simple_repeat 2 33 0 3 628 375 332 64 128 chr5 5707876 5708356 -146828903 + MLT1G3 LTR MaLR 57 572 -7 3 628 22 35 0 0 chr5 5708777 5708806 -146828453 + AT_rich Low_complexity Low_complexity 1 29 0 3 628 978 150 7 26 chr5 5709389 5709540 -146827719 - B1_Mur2 SINE Alu 0 149 2 3 628 207 0 0 0 chr5 5709667 5709690 -146827569 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 628 1275 42 7 0 chr5 5709690 5709834 -146827425 - B1_Mm SINE Alu -2 145 1 3 628 1334 101 20 31 chr5 5709870 5710065 -146827194 - B2_Mm2 SINE B2 -1 194 2 3 628 745 286 54 31 chr5 5710543 5710767 -146826492 - B4A SINE B4 -61 231 3 3 628 252 0 0 0 chr5 5711044 5711072 -146826187 + (TTTAA)n Simple_repeat Simple_repeat 1 28 0 3 628 318 285 43 37 chr5 5711073 5711231 -146826028 + L1M5 LINE L1 3759 3920 -2226 3 628 1252 185 188 3 chr5 5711297 5711401 -146825858 - RMER1B Other Other -14 1052 948 3 628 272 70 0 23 chr5 5711401 5711445 -146825814 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 628 1252 185 188 3 chr5 5711445 5711644 -146825615 - RMER1B Other Other -119 947 694 3 628 495 0 0 0 chr5 5712349 5712404 -146824855 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 628 198 0 0 0 chr5 5712405 5712427 -146824832 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 628 1228 68 0 7 chr5 5712503 5712650 -146824609 - B1_Mm SINE Alu 0 147 2 3 628 204 267 0 0 chr5 5712906 5712951 -146824308 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 628 339 285 97 50 chr5 5713087 5713211 -146824048 - Charlie1b DNA MER1_type -21 502 377 3 628 1131 48 6 88 chr5 5713211 5713370 -146823889 - B1_Mm SINE Alu 0 147 2 3 628 339 285 97 50 chr5 5713370 5713504 -146823755 - Charlie1b DNA MER1_type -147 376 232 3 628 231 36 0 0 chr5 5713512 5713540 -146823719 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 3 628 644 270 73 62 chr5 5713624 5713825 -146823434 - ID_B1 SINE B4 -21 203 5 3 628 21 0 0 0 chr5 5714785 5714806 -146822453 + AT_rich Low_complexity Low_complexity 1 21 0 3 628 22 0 0 0 chr5 5714845 5714867 -146822392 + AT_rich Low_complexity Low_complexity 1 22 0 3 628 278 216 14 0 chr5 5715566 5715640 -146821619 + GA-rich Low_complexity Low_complexity 2 76 0 3 628 323 269 13 13 chr5 5715655 5715734 -146821525 + ID4_ SINE ID 3 81 -2 3 628 564 312 77 48 chr5 5717130 5717466 -146819793 + Lx8 LINE L1 7100 7445 -28 3 628 259 258 0 93 chr5 5717388 5717495 -146819764 + RMER1C Other Other 1233 1329 -13 3 628 1404 64 31 36 chr5 5717499 5717693 -146819566 - B2_Mm2 SINE B2 -1 194 2 3 628 1649 221 88 51 chr5 5719046 5719513 -146817746 - RMER19C LTR ERVK -2 609 126 3 628 495 0 0 0 chr5 5719567 5719622 -146817637 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 628 285 75 0 0 chr5 5719622 5719661 -146817598 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 628 22 0 0 0 chr5 5720746 5720768 -146816491 + AT_rich Low_complexity Low_complexity 1 22 0 3 628 1437 57 45 6 chr5 5721812 5721990 -146815269 - B2_Mm2 SINE B2 -9 186 2 3 628 4061 130 60 0 chr5 5723186 5723808 -146813451 - Lx2 LINE L1 -6 6991 6333 3 628 357 231 0 0 chr5 5723809 5723874 -146813385 + 5S rRNA rRNA 1 65 -56 3 628 180 0 0 0 chr5 5724026 5724046 -146813213 + (T)n Simple_repeat Simple_repeat 1 20 0 3 628 1272 48 7 0 chr5 5724046 5724193 -146813066 - B1_Mus1 SINE Alu 0 148 1 3 628 423 38 0 0 chr5 5724554 5724607 -146812652 + (TATG)n Simple_repeat Simple_repeat 2 54 0 3 628 702 294 11 0 chr5 5724614 5724791 -146812468 - B3A SINE B2 -16 182 4 3 628 658 221 8 24 chr5 5724819 5724944 -146812315 - RSINE1 SINE B4 -38 127 5 3 628 862 291 44 74 chr5 5726043 5726250 -146811009 + B4 SINE B4 1 217 -75 3 628 561 68 0 0 chr5 5726250 5726324 -146810935 + (GA)n Simple_repeat Simple_repeat 2 75 0 3 628 862 291 44 74 chr5 5726324 5726337 -146810922 + B4 SINE B4 218 218 -74 3 628 324 0 0 0 chr5 5726337 5726373 -146810886 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 3 628 862 291 44 74 chr5 5726373 5726448 -146810811 + B4 SINE B4 218 288 -4 3 628 366 307 87 49 chr5 5726840 5727025 -146810234 - MER58A DNA MER1_type -5 219 28 3 628 858 292 40 67 chr5 5727210 5727581 -146809678 - RMER5 LTR ERV1 -1 533 173 3 628 266 250 24 12 chr5 5728209 5728294 -146808965 - L2 LINE L2 -755 2664 2579 3 628 218 271 0 0 chr5 5728462 5728510 -146808749 + RSINE1 SINE B4 94 141 -24 3 628 624 27 0 0 chr5 5728554 5728628 -146808631 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 628 5533 188 122 5 chr5 5730334 5731535 -146805724 + Lx3C LINE L1 5631 6972 -4 3 628 227 106 20 41 chr5 5731551 5731600 -146805659 + A-rich Low_complexity Low_complexity 4 51 0 3 628 331 38 38 0 chr5 5731675 5731728 -146805531 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 628 1215 65 0 0 chr5 5731728 5731867 -146805392 - B1_Mus1 SINE Alu -9 139 1 3 628 515 269 166 0 chr5 5731949 5732124 -146805135 + ID_B1 SINE B4 1 204 -20 3 628 1728 150 79 27 chr5 5732482 5732838 -146804421 + RLTR17 LTR ERVK 270 577 -115 3 628 507 303 29 35 chr5 5733431 5733602 -146803657 - B4A SINE B4 -8 284 115 3 628 474 218 26 35 chr5 5733647 5733761 -146803498 + PB1D9 SINE Alu 3 115 -5 3 628 3171 161 109 7 chr5 5733824 5734401 -146802858 + Lx5 LINE L1 6415 7050 0 3 628 270 0 0 0 chr5 5734401 5734431 -146802828 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3 628 1156 114 17 22 chr5 5735161 5735340 -146801919 + L1Md_F2 LINE L1 6404 6581 -1 3 628 652 285 67 6 chr5 5735699 5735879 -146801380 + B3 SINE B2 14 204 -12 3 628 192 40 0 0 chr5 5736013 5736038 -146801221 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 3 628 660 261 13 19 chr5 5736131 5736287 -146800972 + RSINE1 SINE B4 11 165 0 3 628 324 304 0 0 chr5 5736988 5737067 -146800192 - ID4_ SINE ID -4 79 1 3 628 530 54 14 0 chr5 5737324 5737398 -146799861 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 628 760 204 0 35 chr5 5737828 5738001 -146799258 - L1_Rod LINE L1 -215 5632 5466 3 628 445 239 0 11 chr5 5738003 5738096 -146799163 - B1_Mur1 SINE Alu 0 149 58 3 628 189 0 111 0 chr5 5738975 5739011 -146798248 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 628 1247 62 0 0 chr5 5739013 5739159 -146798100 - B1_Mm SINE Alu 0 147 2 3 628 487 269 7 41 chr5 5739215 5739362 -146797897 + B1F SINE Alu 1 142 -7 3 628 744 163 52 7 chr5 5741250 5741386 -146795873 - B1_Mur4 SINE Alu 0 150 9 3 628 204 125 0 0 chr5 5741417 5741449 -146795810 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 3 628 875 162 0 39 chr5 5742991 5743145 -146794114 - B1_Mus1 SINE Alu 0 148 1 3 628 713 201 45 0 chr5 5744354 5744488 -146792771 - B1_Mur1 SINE Alu -6 143 4 3 628 983 26 2 4 chr5 5744572 5744703 -146792556 + B1_Mm SINE Alu 19 146 -3 3 628 180 0 0 0 chr5 5744703 5744723 -146792536 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 628 183 156 0 0 chr5 5744724 5744756 -146792503 + A-rich Low_complexity Low_complexity 1 32 0 4 628 1235 41 7 26 chr5 5744811 5744962 -146792297 - B1_Mus1 SINE Alu 0 148 1 4 628 232 351 100 50 chr5 5745012 5745273 -146791986 + MLT1K LTR MaLR 154 427 -168 4 628 335 25 0 0 chr5 5745273 5745313 -146791946 - L1_Mm LINE L1 -3220 2663 2624 4 628 8806 64 1 2 chr5 5745312 5746417 -146790842 + L1Md_F2 LINE L1 4483 5586 -297 4 628 8358 62 7 2 chr5 5746417 5747407 -146789852 + L1Md_F2 LINE L1 5587 6581 -1 4 628 210 37 0 0 chr5 5747452 5747479 -146789780 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 628 21 36 0 0 chr5 5748900 5748928 -146788331 + AT_rich Low_complexity Low_complexity 1 28 0 4 628 353 188 32 78 chr5 5749946 5750060 -146787199 - PB1D9 SINE Alu -17 110 2 4 628 228 302 0 45 chr5 5750433 5750499 -146786760 - RSINE1 SINE B4 -4 161 99 4 628 983 171 60 5 chr5 5750913 5751017 -146786242 + Lx3B LINE L1 6761 6874 -99 4 628 270 0 0 0 chr5 5751017 5751047 -146786212 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 628 983 171 60 5 chr5 5751047 5751142 -146786117 + Lx3B LINE L1 6875 6970 -3 4 628 201 218 12 25 chr5 5751292 5751372 -146785887 + CT-rich Low_complexity Low_complexity 4 82 0 4 628 817 245 15 59 chr5 5751700 5751973 -146785286 + RLTR11B LTR ERVK 1 261 -192 4 628 452 79 11 53 chr5 5751982 5752076 -146785183 + (GGAGA)n Simple_repeat Simple_repeat 2 91 0 4 628 250 191 15 60 chr5 5752218 5752285 -146784974 - RLTR11A2 LTR ERVK -463 64 1 4 628 1145 286 68 48 chr5 5752327 5752723 -146784536 + Lx5 LINE L1 6629 7032 -18 4 628 6795 61 1 30 chr5 5753725 5754573 -146782686 + L1Md_F2 LINE L1 5757 6580 -2 4 628 232 320 37 90 chr5 5755604 5755738 -146781521 - MIRb SINE MIR -55 213 87 4 628 456 218 18 18 chr5 5755840 5755985 -146781274 - B3 SINE B2 -5 211 2 4 628 4483 109 10 35 chr5 5756025 5756708 -146780551 + Lx3B LINE L1 6303 6968 -5 4 628 27 0 0 0 chr5 5756718 5756745 -146780514 + AT_rich Low_complexity Low_complexity 1 27 0 4 628 1054 282 60 25 chr5 5758215 5758615 -146778644 + MTD LTR MaLR 1 405 -14 4 628 2095 55 33 4 chr5 5758708 5758982 -146778277 + L1Md_F3 LINE L1 5794 6075 -509 4 628 536 308 118 67 chr5 5759573 5759827 -146777432 + B4 SINE B4 1 267 -25 4 628 2537 261 106 17 chr5 5760168 5761210 -146776049 - Lx6 LINE L1 -35 7425 6058 4 628 7410 175 45 35 chr5 5761226 5762859 -146774400 - MusHAL1 LINE L1 -470 2242 594 4 628 1141 215 31 71 chr5 5762872 5763530 -146773729 - L1_Mur3 LINE L1 -4423 1454 892 4 628 3166 195 5 10 chr5 5764720 5765300 -146771959 - Lx2B LINE L1 0 7000 6424 4 628 1153 132 16 0 chr5 5765300 5765482 -146771777 + Lx2B LINE L1 5872 6056 -944 4 628 651 188 76 23 chr5 5765604 5765735 -146771524 - B1_Mur2 SINE Alu -3 146 9 4 628 551 335 55 12 chr5 5765784 5766041 -146771218 - MER67C LTR ERV1 -307 404 137 4 628 264 290 10 51 chr5 5766136 5766234 -146771025 - MER67C LTR ERV1 -365 149 56 4 628 1323 84 0 0 chr5 5766234 5766401 -146770858 - L1_Mm LINE L1 -253 5630 5464 4 628 1985 166 44 10 chr5 5766396 5766779 -146770480 + Lx2B LINE L1 6042 6437 -563 4 628 432 51 0 0 chr5 5767062 5767121 -146770138 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 78 676 250 74 0 chr5 5767152 5767300 -146769959 - B3 SINE B2 -57 159 1 4 629 268 111 18 18 chr5 5767482 5767537 -146769722 + (TA)n Simple_repeat Simple_repeat 2 56 0 4 629 425 289 42 21 chr5 5767544 5767735 -146769524 - HAL1 LINE L1 -934 1573 1379 4 629 363 121 0 0 chr5 5767830 5767888 -146769371 + (CATA)n Simple_repeat Simple_repeat 3 60 0 4 629 28507 119 38 8 chr5 5767888 5773077 -146764182 - L1Md_F LINE L1 -302 5581 238 4 629 1961 177 33 36 chr5 5773468 5773831 -146763428 - ORR1B1 LTR MaLR -32 362 1 4 629 681 367 101 37 chr5 5773848 5774383 -146762876 - MLT1J-int LTR MaLR -2 1385 817 4 629 465 19 0 0 chr5 5774434 5774488 -146762771 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 4 629 8739 35 9 9 chr5 5774569 5775623 -146761636 - MMETn-int LTR ERVK -1436 3408 2355 4 629 19276 35 0 6 chr5 5775622 5777887 -146759372 - MMETn-int LTR ERVK -2593 2251 1 4 629 1736 63 7 59 chr5 5777887 5778173 -146759086 - RLTRETN_Mm LTR ERVK 0 322 52 4 629 9887 86 19 20 chr5 5778198 5779592 -146757667 + MMETn-int LTR ERVK 3452 4844 0 4 629 2410 44 6 50 chr5 5779592 5779929 -146757330 + RLTRETN_Mm LTR ERVK 1 322 0 4 629 671 297 89 21 chr5 5780167 5780279 -146756980 - MER31B LTR ERV1 0 466 350 4 629 489 34 0 0 chr5 5780279 5780338 -146756921 + (TATAA)n Simple_repeat Simple_repeat 4 62 0 4 629 671 297 89 21 chr5 5780338 5780661 -146756598 - MER31B LTR ERV1 -117 349 2 4 629 1061 214 164 129 chr5 5780798 5781309 -146755950 - MT2A LTR ERVL -3 530 2 4 629 309 237 26 13 chr5 5781494 5781571 -146755688 - L1MEg LINE L1 -4165 1919 1842 4 629 228 35 0 0 chr5 5783798 5783827 -146753432 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 4 629 369 0 0 0 chr5 5783827 5783868 -146753391 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 629 2936 18 0 3 chr5 5783868 5784196 -146753063 - IAPLTR2b LTR ERVK 0 327 1 4 629 6454 59 19 12 chr5 5784198 5785021 -146752238 - IAPEz-int LTR ERVK -2 6479 5651 4 629 2767 61 0 3 chr5 5785014 5785357 -146751902 - IAPEz-int LTR ERVK -4781 1700 1359 4 629 3537 97 13 29 chr5 5785357 5786171 -146751088 - IAPEz-int LTR ERVK -5819 662 3 4 629 2976 9 0 3 chr5 5786173 5786500 -146750759 - IAPLTR2b LTR ERVK 0 327 2 4 629 463 306 0 9 chr5 5786506 5786615 -146750644 - RSINE1 SINE B4 -16 149 42 4 629 5231 62 52 1 chr5 5788410 5789087 -146748172 - Lx3_Mus LINE L1 0 7009 6299 4 629 383 336 0 0 chr5 5789087 5789194 -146748065 - B3A SINE B2 -91 107 1 4 629 315 192 40 27 chr5 5789213 5789288 -146747971 + ORR1E LTR MaLR 284 359 0 4 629 272 307 0 66 chr5 5790550 5790672 -146746587 + MTEa LTR MaLR 69 182 -197 4 629 507 107 0 0 chr5 5790672 5790747 -146746512 + (GAAAA)n Simple_repeat Simple_repeat 3 77 0 4 629 557 305 44 10 chr5 5790747 5790952 -146746307 + MTEa LTR MaLR 167 378 -1 4 629 1642 297 70 52 chr5 5790953 5791649 -146745610 + MTEa-int LTR MaLR 1 709 -871 4 629 469 255 51 7 chr5 5791776 5791914 -146745345 + MTEa-int LTR MaLR 1430 1573 -7 4 629 1412 298 40 70 chr5 5791922 5792318 -146744941 + ORR1A4-int LTR MaLR 856 1261 -319 4 629 351 0 0 0 chr5 5792318 5792357 -146744902 + (TTA)n Simple_repeat Simple_repeat 2 40 0 4 629 6356 93 38 3 chr5 5792366 5793279 -146743980 - Lx3B LINE L1 -4 6969 6025 4 629 1412 298 40 70 chr5 5793279 5793402 -146743857 + ORR1A4-int LTR MaLR 1262 1369 -211 4 629 689 341 42 25 chr5 5793406 5793689 -146743570 - MTE2a LTR MaLR -34 345 58 4 629 251 262 28 131 chr5 5793754 5793818 -146743441 + ORR1A4-int LTR MaLR 1348 1408 -101 4 629 691 238 70 30 chr5 5793818 5794017 -146743242 - B3 SINE B2 -7 209 3 4 629 359 264 28 90 chr5 5794017 5794134 -146743125 + ORR1A4-int LTR MaLR 1409 1534 -46 4 629 1307 248 46 38 chr5 5794153 5794522 -146742737 + MTEa LTR MaLR 6 377 -2 4 629 309 264 58 58 chr5 5794905 5795042 -146742217 - RMER20B LTR ERVK -25 602 466 4 629 297 68 0 0 chr5 5795159 5795203 -146742056 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 629 4242 68 28 0 chr5 5795269 5795876 -146741383 + L1Md_F2 LINE L1 5519 6139 -443 4 629 435 308 48 71 chr5 5796266 5796745 -146740514 - L1M2 LINE L1 -2248 3895 3428 4 629 1162 62 0 14 chr5 5796756 5796902 -146740357 - B1_Mm SINE Alu -1 146 3 4 629 642 290 151 57 chr5 5796905 5797329 -146739930 - Lx8 LINE L1 -7 7466 7003 4 629 315 308 66 66 chr5 5797348 5797604 -146739655 - L1_Rod LINE L1 -2425 3422 3176 4 629 1740 179 12 6 chr5 5797604 5797930 -146739329 + ORR1A4 LTR MaLR 2 329 0 4 629 315 308 66 66 chr5 5797930 5798125 -146739134 - L1_Rod LINE L1 -2672 3175 2971 4 629 189 0 0 0 chr5 5799176 5799197 -146738062 + (CAA)n Simple_repeat Simple_repeat 3 23 0 4 629 39100 31 2 6 chr5 5799919 5803328 -146733931 - L1Md_A LINE L1 -1 6584 3201 4 629 1588 48 0 0 chr5 5803328 5803517 -146733742 - B2_Mm1a SINE B2 -3 190 2 4 629 39100 37 2 7 chr5 5803517 5805781 -146731478 - L1Md_A LINE L1 -2686 3200 840 4 629 1861 110 276 51 chr5 5805781 5806230 -146731029 - RLTR6_Mm LTR ERV1 -68 586 37 4 629 244 182 227 0 chr5 5806270 5806336 -146730923 - RLTR6_Mm LTR ERV1 -573 81 1 4 629 2278 60 3 0 chr5 5806336 5806619 -146730640 - L1Md_F LINE L1 -5663 856 573 4 629 1047 186 7 118 chr5 5806611 5806898 -146730361 - L1Md_F LINE L1 -6078 441 4 4 629 284 333 0 19 chr5 5807129 5807233 -146730026 - RSINE1 SINE B4 -47 118 17 4 629 213 108 0 0 chr5 5808350 5808387 -146728872 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 629 767 11 11 0 chr5 5808389 5808481 -146728778 + (GA)n Simple_repeat Simple_repeat 1 93 0 4 629 3773 102 0 0 chr5 5809839 5810341 -146726918 + L1_Mus2 LINE L1 6061 6562 -4 4 629 337 260 19 9 chr5 5810920 5811025 -146726234 - PB1D10 SINE Alu -1 116 11 4 629 254 29 29 0 chr5 5811551 5811586 -146725673 + (TTCTC)n Simple_repeat Simple_repeat 5 40 0 4 629 1308 79 0 0 chr5 5811586 5811764 -146725495 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 4 629 2998 104 20 7 chr5 5811764 5812289 -146724970 - L1_Mus3 LINE L1 0 6638 6174 4 629 313 265 25 81 chr5 5812527 5812600 -146724659 - L1M2 LINE L1 -1087 5056 4982 4 629 1182 55 0 0 chr5 5812600 5812746 -146724513 - B1_Mus2 SINE Alu -1 146 1 4 629 313 265 25 81 chr5 5812746 5812832 -146724427 - L1M2 LINE L1 -1162 4981 4906 4 629 5647 51 4 0 chr5 5813142 5813829 -146723430 + L1_Mus2 LINE L1 5877 6566 0 4 629 1006 155 36 10 chr5 5815104 5815300 -146721959 + RLTR41 LTR ERV1 246 446 0 4 629 621 261 97 17 chr5 5815656 5815894 -146721365 + MER34A1 LTR ERV1 223 479 -108 4 629 675 99 0 0 chr5 5815905 5816006 -146721253 + (GA)n Simple_repeat Simple_repeat 2 102 0 4 629 3517 60 2 0 chr5 5816219 5816665 -146720594 - L1_Mm LINE L1 -485 5398 4952 4 629 2669 37 3 9 chr5 5816665 5816994 -146720265 + L1Md_F2 LINE L1 6256 6582 0 4 629 546 43 0 0 chr5 5817409 5817478 -146719781 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 629 339 85 0 0 chr5 5817479 5817526 -146719733 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 629 1097 283 23 29 chr5 5817638 5817980 -146719279 - Lx6 LINE L1 -26 7434 7095 4 629 1581 186 49 0 chr5 5818026 5818392 -146718867 - L1_Mur2 LINE L1 -4236 1641 1258 4 629 423 119 0 0 chr5 5818649 5818716 -146718543 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 629 524 222 9 9 chr5 5818722 5818831 -146718428 - B1_Mur3 SINE Alu -40 109 1 4 629 287 198 25 144 chr5 5818728 5818846 -146718413 - MT2B LTR ERVL -345 256 153 4 629 270 291 26 0 chr5 5818860 5818977 -146718282 + L1M4 LINE L1 4923 5042 -1104 4 629 730 265 0 6 chr5 5819744 5819915 -146717344 + B3 SINE B2 3 172 -44 4 629 1758 146 0 91 chr5 5819915 5820062 -146717197 + MERVK26-int LTR ERVK 6633 6754 -165 5 629 3058 122 8 16 chr5 5820062 5820552 -146716707 - Lx2 LINE L1 -1 6996 6511 5 629 1758 146 0 91 chr5 5820552 5820713 -146716546 + MERVK26-int LTR ERVK 6755 6913 -6 5 629 382 36 36 0 chr5 5820902 5820958 -146716301 + (GAAAA)n Simple_repeat Simple_repeat 2 59 0 5 629 1045 115 0 51 chr5 5820958 5821114 -146716145 + B1_Mus1 SINE Alu 1 148 0 5 629 326 291 37 15 chr5 5821134 5821270 -146715989 + L1M2 LINE L1 5520 5658 -642 5 629 6773 81 6 1 chr5 5821267 5822143 -146715116 + L1_Mus1 LINE L1 5694 6654 0 5 629 1210 194 223 9 chr5 5822153 5822480 -146714779 - RMER20B LTR ERVK -228 399 3 5 629 3414 92 106 16 chr5 5822631 5823148 -146714111 + LTRIS2 LTR ERV1 1 564 0 5 629 255 286 18 37 chr5 5823363 5823472 -146713787 + Tigger5 DNA MER2_type 22 128 -2278 5 629 1855 147 6 158 chr5 5824299 5824793 -146712466 - RLTR23 LTR ERV1 -2 428 10 5 629 260 182 0 18 chr5 5825003 5825059 -146712200 - MER67D LTR ERV1 -309 402 348 5 629 242 298 24 0 chr5 5825105 5825189 -146712070 - MER67D LTR ERV1 -439 272 187 5 629 236 252 47 126 chr5 5825223 5825350 -146711909 + PB1D10 SINE Alu 1 117 0 5 629 307 277 83 57 chr5 5825474 5825631 -146711628 - MER67D LTR ERV1 -353 161 1 5 629 25 0 0 0 chr5 5825698 5825723 -146711536 + AT_rich Low_complexity Low_complexity 1 25 0 5 629 21 0 0 0 chr5 5825831 5825852 -146711407 + AT_rich Low_complexity Low_complexity 1 21 0 5 629 409 341 130 45 chr5 5826141 5826648 -146710611 + MLT2B3 LTR ERVL 5 554 0 5 629 748 252 23 51 chr5 5826731 5826948 -146710311 - B3 SINE B2 -5 211 1 5 629 291 366 91 21 chr5 5827144 5827429 -146709830 - L2 LINE L2 -622 2797 2493 5 629 3493 120 25 16 chr5 5827473 5828025 -146709234 + Lx LINE L1 6098 6654 0 5 629 363 44 0 0 chr5 5828219 5828264 -146708995 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 629 249 159 0 0 chr5 5829042 5829086 -146708173 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 629 22 35 0 0 chr5 5829227 5829256 -146708003 + AT_rich Low_complexity Low_complexity 1 29 0 5 629 363 223 301 9 chr5 5829333 5829446 -146707813 - B1_Mus2 SINE Alu -1 146 1 5 629 32 43 0 0 chr5 5829631 5829677 -146707582 + AT_rich Low_complexity Low_complexity 1 46 0 5 629 5439 215 58 13 chr5 5829898 5830403 -146706856 + L1_Mur2 LINE L1 1532 2048 -3829 5 629 432 0 0 0 chr5 5830403 5830451 -146706808 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 629 5439 215 58 13 chr5 5830451 5831299 -146705960 + L1_Mur2 LINE L1 2049 2947 -2930 5 629 2231 181 37 20 chr5 5831284 5831742 -146705517 + L1_Mur2 LINE L1 3678 4143 -1734 5 629 1108 104 25 80 chr5 5833178 5833377 -146703882 - B2_Mm2 SINE B2 -7 188 1 5 629 2002 164 238 0 chr5 5833858 5834328 -146702931 - RMER6C LTR ERVK -3 687 106 5 629 2222 209 7 20 chr5 5834545 5834874 -146702385 + Lx6 LINE L1 6284 6615 -845 5 629 1838 135 44 9 chr5 5834874 5835217 -146702042 + RLTR15 LTR ERVK 1 355 -4 5 629 2222 209 7 20 chr5 5835217 5835345 -146701914 + Lx6 LINE L1 6616 6735 -725 5 629 2132 214 71 2 chr5 5835339 5835831 -146701428 + Lx7 LINE L1 6842 7367 -329 5 629 22 35 0 0 chr5 5835879 5835908 -146701351 + AT_rich Low_complexity Low_complexity 1 29 0 5 629 1103 227 47 47 chr5 5835950 5835967 -146701292 + Lx7 LINE L1 7359 7377 -319 5 629 567 0 0 0 chr5 5835967 5836030 -146701229 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 5 629 1103 227 47 47 chr5 5836030 5836350 -146700909 + Lx7 LINE L1 7378 7695 -1 5 629 29 28 0 0 chr5 5836664 5836700 -146700559 + AT_rich Low_complexity Low_complexity 1 36 0 5 629 1724 154 311 78 chr5 5837426 5837912 -146699347 - MT2B LTR ERVL 0 601 3 5 629 3501 94 0 0 chr5 5838100 5838679 -146698580 - Lx2 LINE L1 -1074 5923 5345 5 629 326 71 18 0 chr5 5838679 5838735 -146698524 + Lx2 LINE L1 6941 6997 0 5 629 207 69 0 0 chr5 5839047 5839076 -146698183 + (T)n Simple_repeat Simple_repeat 1 29 0 5 629 753 233 84 11 chr5 5839256 5839447 -146697812 - B3 SINE B2 -9 207 3 5 629 26 0 0 0 chr5 5839531 5839557 -146697702 + AT_rich Low_complexity Low_complexity 1 26 0 5 629 195 100 0 0 chr5 5839683 5839713 -146697546 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 629 210 37 0 0 chr5 5840072 5840099 -146697160 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 5 629 1116 198 9 9 chr5 5840164 5840378 -146696881 + B3 SINE B2 3 216 0 5 629 303 361 87 10 chr5 5840528 5840724 -146696535 + Charlie1b DNA MER1_type 35 245 -278 5 629 865 295 139 14 chr5 5840745 5841185 -146696074 + MLT1D LTR MaLR 1 495 -10 5 629 189 196 0 0 chr5 5841564 5841610 -146695649 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 629 182 283 22 0 chr5 5841678 5841724 -146695535 + MIRm SINE MIR 216 262 -14 5 629 478 272 57 139 chr5 5842147 5842356 -146694903 - B3A SINE B2 0 198 7 5 629 537 289 88 46 chr5 5842941 5843082 -146694177 + LTR87 LTR ERVL? 279 422 -202 5 629 2154 104 3 63 chr5 5843082 5843432 -146693827 - ORR1A4 LTR MaLR 0 329 1 5 629 537 289 88 46 chr5 5843432 5843551 -146693708 + LTR87 LTR ERVL? 423 550 -74 5 629 2317 74 27 21 chr5 5843903 5844253 -146693006 - L1Md_F2 LINE L1 0 6582 6233 5 629 29 0 0 0 chr5 5844986 5845015 -146692244 + AT_rich Low_complexity Low_complexity 1 29 0 5 629 404 268 0 39 chr5 5847510 5847638 -146689621 - Charlie10 DNA MER1_type -2254 568 446 5 629 464 357 21 7 chr5 5847638 5847782 -146689477 + RSINE1 SINE B4 6 151 -14 5 629 1262 225 90 113 chr5 5847814 5848013 -146689246 - RLTR28B LTR ERVL 0 481 301 5 629 5382 5 0 0 chr5 5848013 5848607 -146688652 + L1Md_A LINE L1 5989 6582 0 5 629 1262 225 90 113 chr5 5848607 5848883 -146688376 - RLTR28B LTR ERVL -181 300 17 5 629 550 266 38 0 chr5 5849493 5849677 -146687582 + B3A SINE B2 2 192 -6 5 629 579 160 0 0 chr5 5849850 5849944 -146687315 - 4.5SRNA scRNA scRNA 0 94 1 5 629 3422 118 23 4 chr5 5849965 5850493 -146686766 - Lx4A LINE L1 -7 7051 6514 5 629 209 188 12 0 chr5 5850864 5850944 -146686315 + (CAGAG)n Simple_repeat Simple_repeat 1 81 0 5 629 558 0 0 0 chr5 5851353 5851415 -146685844 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 629 3176 45 5 5 chr5 5852408 5852806 -146684453 + L1Md_F2 LINE L1 6183 6580 -2 5 629 2029 238 79 19 chr5 5853128 5853651 -146683608 + RMER19C LTR ERVK 1 611 0 5 629 2648 86 5 2 chr5 5854014 5854410 -146682849 - L1_Mus1 LINE L1 -492 5391 4995 5 629 6910 77 22 1 chr5 5854405 5855591 -146681668 + L1_Mus1 LINE L1 5363 6567 0 5 629 798 254 10 31 chr5 5855606 5855801 -146681458 - B3A SINE B2 0 198 8 5 629 330 268 31 10 chr5 5856248 5856346 -146680913 - LTR53 LTR ERVL 0 519 420 5 629 684 322 67 40 chr5 5856481 5856808 -146680451 - LTR53 LTR ERVL -152 367 32 5 629 820 215 0 7 chr5 5856826 5856976 -146680283 - B1_Mur3 SINE Alu 0 149 1 5 629 702 152 76 0 chr5 5857227 5857345 -146679914 + B1_Mur2 SINE Alu 22 148 -1 5 629 396 299 75 85 chr5 5857466 5857678 -146679581 + MER2 DNA MER2_type 93 302 -43 5 629 339 218 61 136 chr5 5857842 5858011 -146679248 - MTEb LTR MaLR -27 352 209 5 629 2416 182 83 21 chr5 5858071 5858538 -146678721 + RMER15 LTR ERVL 79 574 -1 5 629 371 273 7 22 chr5 5858719 5858854 -146678405 - L1MB8 LINE L1 -166 6012 5880 5 629 609 14 0 0 chr5 5859163 5859233 -146678026 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 5 629 470 32 0 31 chr5 5859246 5859311 -146677948 + (TATG)n Simple_repeat Simple_repeat 2 64 0 5 629 405 0 0 0 chr5 5859620 5859665 -146677594 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 5 629 2474 189 44 2 chr5 5859980 5860479 -146676780 + RLTR28 LTR ERVL 1 520 -4 5 629 548 299 127 29 chr5 5860762 5861038 -146676221 + ORR1E LTR MaLR 55 357 -2 5 629 2932 271 72 60 chr5 5861379 5862919 -146674340 - Lx5 LINE L1 -18 7032 5485 5 629 2107 54 0 0 chr5 5862907 5863184 -146674075 - L1_Mus3 LINE L1 -537 6101 5825 5 629 209 210 12 36 chr5 5863197 5863281 -146673978 + (TTAAA)n Simple_repeat Simple_repeat 1 82 0 5 629 240 86 0 0 chr5 5864138 5864173 -146673086 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 629 3502 20 2 0 chr5 5864468 5864863 -146672396 + MTA_Mm LTR MaLR 1 396 0 5 629 21 0 0 0 chr5 5864984 5865005 -146672254 + AT_rich Low_complexity Low_complexity 1 21 0 5 629 263 217 84 0 chr5 5865647 5865730 -146671529 + MER5C DNA MER1_type 72 161 -152 5 629 186 43 0 0 chr5 5865739 5865762 -146671497 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 629 633 61 0 0 chr5 5865798 5865880 -146671379 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 5 629 363 287 78 51 chr5 5866018 5866267 -146670992 - MTE2b LTR MaLR 0 379 52 5 629 2199 134 17 32 chr5 5866281 5866688 -146670571 - Lx2 LINE L1 0 6997 6597 5 629 3380 150 19 37 chr5 5866688 5867338 -146669921 + Lx2 LINE L1 5702 6339 -658 5 629 222 37 0 0 chr5 5868468 5868495 -146668764 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5 629 214 156 64 43 chr5 5868517 5868564 -146668695 + B3A SINE B2 1 48 -150 5 629 423 0 0 0 chr5 5868573 5868620 -146668639 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 629 25 31 0 0 chr5 5868643 5868675 -146668584 + AT_rich Low_complexity Low_complexity 1 32 0 5 629 937 254 86 68 chr5 5868818 5869171 -146668088 - ORR1E LTR MaLR 0 379 4 5 629 927 84 72 140 chr5 5869221 5869414 -146667845 - B2_Mm2 SINE B2 -14 181 2 5 629 24 32 0 0 chr5 5869424 5869455 -146667804 + AT_rich Low_complexity Low_complexity 1 31 0 5 629 550 292 6 53 chr5 5869522 5869692 -146667567 - RSINE1 SINE B4 0 165 4 5 629 342 0 0 0 chr5 5869882 5869920 -146667339 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 629 997 238 11 31 chr5 5870248 5870535 -146666724 - Lx6 LINE L1 -15 7445 7165 5 629 4230 189 90 8 chr5 5871829 5872718 -146664541 - Lx5 LINE L1 -2 7048 6087 5 629 468 0 0 0 chr5 5873165 5873217 -146664042 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 629 3359 175 107 6 chr5 5873484 5874112 -146663147 - RLTR17 LTR ERVK -1 691 1 6 629 1226 250 33 7 chr5 5874748 5875050 -146662209 + MTD LTR MaLR 11 320 -99 6 629 2233 187 152 46 chr5 5875083 5875734 -146661525 - RMER6D LTR ERVK 0 720 1 6 629 244 336 90 7 chr5 5875966 5876110 -146661149 + MER90 LTR ERV1 261 416 -159 6 629 411 301 69 58 chr5 5876213 5876386 -146660873 + MER5B DNA MER1_type 4 178 0 6 629 1058 202 258 29 chr5 5877630 5877971 -146659288 + MTD LTR MaLR 1 419 0 6 629 526 129 0 38 chr5 5880039 5880144 -146657115 + C-rich Low_complexity Low_complexity 1 101 0 6 629 1161 78 0 32 chr5 5880144 5880330 -146656929 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 6 629 22 0 0 0 chr5 5880465 5880487 -146656772 + AT_rich Low_complexity Low_complexity 1 22 0 6 629 3108 107 31 10 chr5 5880488 5880977 -146656282 - Lx3A LINE L1 -5 6976 6478 6 629 7236 83 8 11 chr5 5881153 5882200 -146655059 + L1_Mus3 LINE L1 5588 6630 -8 6 629 261 361 102 16 chr5 5882330 5882404 -146654855 - MLT1H-int LTR MaLR -471 938 859 6 629 3403 38 0 0 chr5 5882404 5882800 -146654459 + MTA_Mm LTR MaLR 1 396 0 6 629 261 361 102 16 chr5 5882800 5882911 -146654348 - MLT1H-int LTR MaLR -551 858 737 6 629 662 230 7 39 chr5 5882917 5883071 -146654188 + B1_Mur2 SINE Alu 1 149 0 6 629 3145 87 2 0 chr5 5883240 5883665 -146653594 - L1_Mus1 LINE L1 -1 6566 6141 6 629 28664 118 19 4 chr5 5883671 5888906 -146648353 - L1Md_F LINE L1 -154 5729 415 6 629 431 321 7 28 chr5 5888983 5889124 -146648135 - ID_B1 SINE B4 -7 217 80 6 629 321 264 104 44 chr5 5889157 5889192 -146648067 - B2_Mm2 SINE B2 -2 193 162 6 629 270 0 0 0 chr5 5889192 5889222 -146648037 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 629 403 257 64 15 chr5 5889222 5889368 -146647891 - B3A SINE B2 -34 161 1 6 629 243 341 135 21 chr5 5889387 5889528 -146647731 - MLT1H-int LTR MaLR -948 461 305 6 629 1032 257 12 8 chr5 5889553 5889796 -146647463 + RMER1B Other Other 596 839 -227 6 629 226 344 11 21 chr5 5890177 5890272 -146646987 + RMER1C Other Other 32 125 -1217 6 629 3604 247 32 58 chr5 5890352 5891386 -146645873 + RMER1C Other Other 339 1310 -32 6 629 262 160 53 0 chr5 5891392 5891467 -146645792 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 629 300 53 0 0 chr5 5891569 5891607 -146645652 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6 629 785 170 7 15 chr5 5891607 5891744 -146645515 - B1_Mur3 SINE Alu -12 137 2 6 629 541 340 83 57 chr5 5891911 5892438 -146644821 - MLT1H LTR MaLR -4 545 5 6 629 2851 34 3 9 chr5 5892788 5893117 -146644142 - L1Md_F2 LINE L1 -2 6580 6254 6 629 2123 193 199 0 chr5 5893161 5893638 -146643621 + RMER15 LTR ERVL 4 575 0 6 629 814 301 68 23 chr5 5895721 5896266 -146640993 - L1MA5 LINE L1 -370 5930 5368 6 629 448 272 23 73 chr5 5896398 5896541 -146640718 - B4 SINE B4 -156 136 4 6 629 741 281 44 8 chr5 5896541 5896792 -146640467 - L1MA5 LINE L1 -1086 5057 4798 6 629 396 252 74 43 chr5 5896810 5896972 -146640287 + L1MA5 LINE L1 4611 4777 -1366 6 630 233 234 0 0 chr5 5898282 5898329 -146638930 - PB1D10 SINE Alu -7 110 64 6 630 180 0 0 0 chr5 5898337 5898357 -146638902 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 6 630 295 339 71 0 chr5 5898390 5898502 -146638757 - Lx8 LINE L1 -142 7331 7212 6 630 690 239 0 0 chr5 5898503 5898633 -146638626 - B1_Mur1 SINE Alu -17 132 3 6 630 372 43 0 0 chr5 5898717 5898763 -146638496 + (TATG)n Simple_repeat Simple_repeat 3 48 0 6 630 813 119 0 0 chr5 5898764 5898890 -146638369 - L1Md_F2 LINE L1 -20 6562 6437 6 630 180 0 0 0 chr5 5900100 5900120 -146637139 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 630 234 0 0 0 chr5 5900412 5900438 -146636821 + (TATG)n Simple_repeat Simple_repeat 1 26 0 6 630 231 245 0 19 chr5 5902226 5902280 -146634979 + MLT1B LTR MaLR 325 377 -13 6 630 583 214 204 19 chr5 5902269 5902431 -146634828 - ID_B1 SINE B4 -30 194 3 6 630 31 44 0 0 chr5 5902434 5902479 -146634780 + AT_rich Low_complexity Low_complexity 1 45 0 6 630 538 245 26 3 chr5 5902484 5902607 -146634652 - B3 SINE B2 0 198 77 6 630 939 293 33 90 chr5 5902626 5902919 -146634340 - MTD LTR MaLR -101 318 1 6 630 8060 48 14 8 chr5 5903098 5903164 -146634095 - L1Md_F2 LINE L1 -1 6581 6521 6 630 3703 18 5 0 chr5 5903164 5903558 -146633701 + MTA_Mm LTR MaLR 1 396 0 6 630 9452 42 12 0 chr5 5903558 5904643 -146632616 + MTA_Mm-int LTR MaLR 1 1098 0 6 630 3571 33 5 0 chr5 5904643 5905037 -146632222 + MTA_Mm LTR MaLR 1 396 0 6 630 34666 75 6 1 chr5 5905037 5911144 -146626115 - L1Md_F2 LINE L1 -62 6520 388 6 630 386 226 0 79 chr5 5911811 5911833 -146625426 - MLT1B LTR MaLR -1 389 375 6 630 1256 269 88 20 chr5 5911833 5912186 -146625073 + MTE2a LTR MaLR 3 379 0 6 630 386 245 9 58 chr5 5912186 5912305 -146624954 - MLT1B LTR MaLR -16 374 239 6 630 3097 275 50 79 chr5 5914283 5915806 -146621453 + RMER1C Other Other 1 1219 -123 6 630 410 178 0 11 chr5 5915806 5915897 -146621362 + CT-rich Low_complexity Low_complexity 3 92 0 6 630 318 100 33 130 chr5 5915906 5915998 -146621261 + RMER1C Other Other 1260 1342 0 6 630 339 212 49 12 chr5 5916256 5916337 -146620922 + MTD LTR MaLR 6 89 -330 6 630 474 49 0 0 chr5 5916337 5916398 -146620861 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 630 301 309 31 10 chr5 5918184 5918282 -146618977 + B4 SINE B4 2 101 -191 6 630 192 111 0 0 chr5 5918282 5918318 -146618941 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 630 183 114 0 0 chr5 5918387 5918422 -146618837 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 630 285 224 0 0 chr5 5918488 5918613 -146618646 + (TG)n Simple_repeat Simple_repeat 1 125 0 6 630 1331 198 51 0 chr5 5918965 5919202 -146618057 - Lx5 LINE L1 0 7050 6802 6 630 22 0 0 0 chr5 5919203 5919225 -146618034 + AT_rich Low_complexity Low_complexity 1 22 0 6 630 1250 126 50 15 chr5 5919253 5919455 -146617804 + L1VL4 LINE L1 17 225 -6077 6 630 315 0 0 0 chr5 5920253 5920288 -146616971 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 630 186 43 0 0 chr5 5922051 5922074 -146615185 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 630 1086 210 10 10 chr5 5922267 5922474 -146614785 + B3 SINE B2 4 210 -6 6 630 244 312 121 30 chr5 5923639 5923771 -146613488 + Tigger12 DNA MER2_type 858 1001 -958 6 630 733 204 49 0 chr5 5924248 5924390 -146612869 - B1_Mur4 SINE Alu -1 149 1 6 630 415 272 35 17 chr5 5924616 5924732 -146612527 + PB1D7 SINE Alu 1 118 -2 6 630 320 308 12 12 chr5 5925063 5925181 -146612078 - ID4_ SINE ID -30 122 8 6 630 357 296 109 18 chr5 5925199 5925309 -146611950 - PB1 SINE Alu -2 125 6 6 630 310 333 58 0 chr5 5926407 5926545 -146610714 - LTR16D LTR ERVL -17 634 489 6 630 262 211 18 0 chr5 5927103 5927160 -146610099 + B4 SINE B4 2 59 -233 6 630 297 0 0 0 chr5 5927160 5927193 -146610066 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 6 630 221 227 0 0 chr5 5927205 5927249 -146610010 + (TGG)n Simple_repeat Simple_repeat 1 44 0 6 630 283 296 37 0 chr5 5927264 5927345 -146609914 - RSINE1 SINE B4 0 165 82 6 630 920 151 0 6 chr5 5927355 5927535 -146609724 + CT-rich Low_complexity Low_complexity 1 179 0 6 630 319 355 22 11 chr5 5927560 5927651 -146609608 - RSINE1 SINE B4 -73 92 1 6 630 309 278 34 92 chr5 5927667 5927731 -146609528 - PB1 SINE Alu -3 124 66 6 630 1317 40 0 0 chr5 5927731 5927879 -146609380 + B1_Mus1 SINE Alu 1 148 0 6 630 309 278 34 92 chr5 5927879 5927933 -146609326 - PB1 SINE Alu -62 65 13 6 630 278 239 35 13 chr5 5928784 5928872 -146608387 - B3A SINE B2 -65 151 64 6 630 4503 70 4 0 chr5 5928956 5929496 -146607763 - L1Md_T LINE L1 -2 6580 6039 6 630 202 220 0 20 chr5 5929640 5929691 -146607568 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 630 238 321 82 19 chr5 5930051 5930210 -146607049 - L1MC4 LINE L1 -630 7412 7244 6 630 1932 299 70 48 chr5 5932288 5932992 -146604267 + Lx8 LINE L1 6387 7105 -368 6 630 22 70 0 0 chr5 5933098 5933141 -146604118 + AT_rich Low_complexity Low_complexity 1 43 0 6 630 185 0 40 0 chr5 5933141 5933166 -146604093 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 6 630 4956 105 32 4 chr5 5933168 5933857 -146603402 - Lx3A LINE L1 -9 6972 6265 6 630 1173 184 70 4 chr5 5933858 5934114 -146603145 + Lx LINE L1 6380 6652 -2 6 630 1666 88 65 14 chr5 5934113 5934389 -146602870 - Lx3_Mus LINE L1 -713 6296 6007 6 630 31755 125 27 29 chr5 5934620 5940974 -146596285 - L1_Mus1 LINE L1 0 6567 261 6 630 349 323 86 40 chr5 5941358 5941532 -146595727 - ORR1E LTR MaLR -174 185 4 6 630 187 267 0 0 chr5 5943095 5943140 -146594119 + MIRc SINE MIR 102 146 -122 6 630 180 349 16 101 chr5 5944404 5944592 -146592667 + L2 LINE L2 1432 1603 -1816 6 630 397 205 26 0 chr5 5944635 5944713 -146592546 - RLTR11A LTR ERVK 0 528 449 6 630 185 0 0 39 chr5 5945820 5945846 -146591413 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 6 630 201 39 0 0 chr5 5945974 5946000 -146591259 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 6 630 675 0 0 0 chr5 5946455 5946530 -146590729 + (CTATT)n Simple_repeat Simple_repeat 4 78 0 6 630 252 315 0 88 chr5 5946611 5946691 -146590568 - ID4 SINE ID -9 74 2 6 630 374 260 104 0 chr5 5947374 5947470 -146589789 - PB1D10 SINE Alu -11 106 1 6 630 399 267 41 19 chr5 5948083 5948218 -146589041 + Lx7 LINE L1 6617 6759 -701 6 630 6180 122 91 19 chr5 5948453 5949534 -146587725 + Lx3C LINE L1 5815 6973 -3 6 630 299 270 71 0 chr5 5949738 5949864 -146587395 - L1MA8 LINE L1 -18 6273 6139 6 630 874 191 102 21 chr5 5951599 5951786 -146585473 + B3 SINE B2 15 216 0 6 630 351 349 104 4 chr5 5952282 5952512 -146584747 - HAL1 LINE L1 -145 2362 2110 6 630 645 319 67 67 chr5 5952518 5952834 -146584425 - MLT2D LTR ERVL -2 412 97 6 630 508 312 127 37 chr5 5953150 5953473 -146583786 - MLT1C LTR MaLR -8 459 108 6 630 290 321 17 67 chr5 5953784 5954024 -146583235 - HAL1 LINE L1 -945 1562 1335 6 630 304 310 65 65 chr5 5954069 5954207 -146583052 + B1F1 SINE Alu 10 147 -2 7 630 317 323 84 18 chr5 5954943 5955110 -146582149 - L2a LINE L2 -314 3112 2935 7 630 260 270 16 0 chr5 5955196 5955259 -146582000 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 630 357 296 45 0 chr5 5955487 5955619 -146581640 - B1_Mur4 SINE Alu 0 150 13 7 630 243 306 47 0 chr5 5956020 5956100 -146581159 - MLT2B4 LTR ERVL -407 149 66 7 630 2508 104 17 27 chr5 5956100 5956513 -146580746 - RLTR9E LTR ERVK 0 409 1 7 630 334 368 38 31 chr5 5956836 5956996 -146580263 - RSINE1 SINE B4 -2 163 3 7 630 411 139 181 21 chr5 5957011 5957146 -146580113 - B2_Mm2 SINE B2 -9 186 15 7 630 28 61 0 0 chr5 5957194 5957243 -146580016 + AT_rich Low_complexity Low_complexity 1 49 0 7 630 352 48 0 0 chr5 5957247 5957289 -146579970 + L1_Mus2 LINE L1 6216 6257 -309 7 630 1241 102 11 0 chr5 5957289 5957465 -146579794 - B2_Mm1t SINE B2 -14 179 2 7 630 1505 41 0 20 chr5 5958095 5958292 -146578967 + L1Md_F2 LINE L1 6379 6571 -11 7 630 924 295 105 113 chr5 5958376 5959102 -146578157 + Lx8 LINE L1 6674 7393 -80 7 630 213 172 15 45 chr5 5959278 5959345 -146577914 + (TTTAA)n Simple_repeat Simple_repeat 3 67 0 7 630 22 0 0 0 chr5 5959349 5959371 -146577888 + AT_rich Low_complexity Low_complexity 1 22 0 7 630 329 207 11 0 chr5 5960278 5960365 -146576894 + CT-rich Low_complexity Low_complexity 1 88 0 7 630 320 333 21 41 chr5 5960365 5960466 -146576793 - HAL1-3A_ME LINE L1 -421 2437 2336 7 630 1015 128 0 22 chr5 5960466 5960650 -146576609 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 7 630 320 333 21 41 chr5 5960650 5960707 -146576552 - HAL1-3A_ME LINE L1 -523 2335 2280 7 630 387 262 175 0 chr5 5960707 5960833 -146576426 - B1F2 SINE Alu 0 149 2 7 630 320 333 21 41 chr5 5960833 5960867 -146576392 - HAL1-3A_ME LINE L1 -579 2279 2248 7 630 24 77 0 0 chr5 5961102 5961154 -146576105 + AT_rich Low_complexity Low_complexity 1 52 0 7 630 713 70 10 0 chr5 5961262 5961362 -146575897 + (TCTA)n Simple_repeat Simple_repeat 3 103 0 7 630 327 312 7 86 chr5 5961513 5961664 -146575595 - PB1D10 SINE Alu -5 142 4 7 630 391 291 112 18 chr5 5961821 5962045 -146575214 - L1MDa LINE L1 -5126 1507 1263 7 630 256 272 43 26 chr5 5962062 5962179 -146575080 + L1MA8 LINE L1 6167 6285 -6 7 630 732 23 0 0 chr5 5962232 5962318 -146574941 + (TCTCC)n Simple_repeat Simple_repeat 5 90 0 7 630 822 172 0 7 chr5 5962344 5962490 -146574769 - B1_Mur4 SINE Alu -3 147 3 7 630 843 197 80 10 chr5 5962847 5963047 -146574212 - B3 SINE B2 0 216 3 7 630 252 0 0 0 chr5 5963548 5963576 -146573683 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7 630 451 114 0 78 chr5 5963888 5964030 -146573229 + (CCA)n Simple_repeat Simple_repeat 3 133 0 7 630 399 41 0 0 chr5 5964985 5965034 -146572225 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 630 393 239 186 14 chr5 5965076 5965216 -146572043 + MIRb SINE MIR 67 230 -38 7 630 217 227 170 64 chr5 5965318 5965412 -146571847 - L2a LINE L2 -14 3412 3309 7 630 324 48 0 0 chr5 5965452 5965494 -146571765 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 630 211 217 22 0 chr5 5965520 5965566 -146571693 + GA-rich Low_complexity Low_complexity 3 49 0 7 630 34 31 0 45 chr5 5965885 5965952 -146571307 + AT_rich Low_complexity Low_complexity 1 64 0 7 630 273 231 62 0 chr5 5966409 5966474 -146570785 + L2a LINE L2 3305 3373 -53 7 630 8395 100 26 7 chr5 5966651 5967713 -146569546 + Lx3A LINE L1 4637 5705 -181 7 630 230 0 33 0 chr5 5967713 5967743 -146569516 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 630 8395 118 52 8 chr5 5967743 5968046 -146569213 + Lx3A LINE L1 5703 6042 -939 7 630 213 39 0 0 chr5 5968046 5968072 -146569187 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 7 630 8395 118 52 8 chr5 5968072 5968979 -146568280 + Lx3A LINE L1 6043 6972 -9 7 630 270 81 0 0 chr5 5969027 5969064 -146568195 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 630 893 284 49 38 chr5 5969155 5969493 -146567766 + MLT2C2 LTR ERVL 42 363 -51 7 630 1016 77 7 0 chr5 5969771 5969914 -146567345 + (TTTC)n Simple_repeat Simple_repeat 3 146 0 7 630 3728 183 72 73 chr5 5969990 5970880 -146566379 - RMER19B LTR ERVK -13 889 1 7 630 198 0 0 0 chr5 5971263 5971285 -146565974 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 630 633 288 107 50 chr5 5971325 5971643 -146565616 - L3b LINE CR1 -121 361 26 7 630 3113 135 57 6 chr5 5972264 5972770 -146564489 - Lx4A LINE L1 -2 7056 6525 7 630 25 0 0 0 chr5 5973050 5973075 -146564184 + AT_rich Low_complexity Low_complexity 1 25 0 7 630 225 229 0 0 chr5 5973491 5973539 -146563720 + MLT1N2 LTR MaLR 493 540 -22 7 630 245 29 29 0 chr5 5973593 5973627 -146563632 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 7 630 1370 318 15 39 chr5 5974224 5974813 -146562446 - Lx9 LINE L1 -139 7505 6931 7 630 542 353 38 14 chr5 5974926 5975136 -146562123 - MLT1A1 LTR MaLR -19 389 175 7 630 3476 132 31 15 chr5 5975152 5975758 -146561501 + L1_Mur2 LINE L1 4661 5276 -601 7 630 26 50 0 0 chr5 5976826 5976866 -146560393 + AT_rich Low_complexity Low_complexity 1 40 0 7 630 251 287 19 38 chr5 5976943 5977048 -146560211 - Lx7 LINE L1 -16 7680 7578 7 630 3104 291 111 35 chr5 5977150 5979229 -146558030 - Lx7 LINE L1 -361 7335 5100 7 630 1116 284 111 8 chr5 5979244 5979603 -146557656 - Lx2B LINE L1 -13 6987 6592 7 630 1465 113 0 0 chr5 5979600 5979812 -146557447 - L1_Mur3 LINE L1 -251 5626 5415 7 630 5440 225 45 21 chr5 5979809 5980241 -146557018 - L1_Mur3 LINE L1 -793 5087 4650 7 630 531 0 0 0 chr5 5980241 5980300 -146556959 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 630 5440 225 45 21 chr5 5980300 5981392 -146555867 - L1_Mur3 LINE L1 -1231 4649 3526 7 630 285 355 23 46 chr5 5981602 5981732 -146555527 - PB1 SINE Alu 0 127 1 7 630 634 225 6 96 chr5 5982438 5982456 -146554803 + ORR1D1 LTR MaLR 4 17 -357 7 630 3861 48 27 0 chr5 5982456 5982933 -146554326 + L1_Mus1 LINE L1 6077 6566 -1 7 630 634 239 181 61 chr5 5982933 5983198 -146554061 + ORR1D1 LTR MaLR 9 341 -29 7 630 1675 165 23 208 chr5 5983533 5984061 -146553198 + RLTR23 LTR ERV1 1 430 0 7 630 309 285 27 40 chr5 5984330 5984480 -146552779 + L1MC4 LINE L1 7103 7250 -792 7 630 28 48 0 0 chr5 5984691 5984733 -146552526 + AT_rich Low_complexity Low_complexity 1 42 0 7 630 21 0 0 0 chr5 5984909 5984930 -146552329 + AT_rich Low_complexity Low_complexity 1 21 0 7 630 186 103 0 0 chr5 5985573 5985602 -146551657 + (T)n Simple_repeat Simple_repeat 1 29 0 7 630 301 356 133 17 chr5 5987579 5987925 -146549334 - L2a LINE L2 -42 3384 2999 7 630 280 293 186 26 chr5 5987975 5988168 -146549091 - L2a LINE L2 -707 2712 2489 7 630 1601 266 88 17 chr5 5988691 5988791 -146548468 - RMER1C Other Other -8 1334 1233 7 630 237 65 0 0 chr5 5988791 5988822 -146548437 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 7 630 1601 266 88 17 chr5 5988822 5989246 -146548013 - RMER1C Other Other -110 1232 774 7 630 1505 222 58 0 chr5 5989548 5989913 -146547346 - Lx9 LINE L1 -5 7639 7254 7 630 246 81 0 0 chr5 5991293 5991330 -146545929 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 7 630 744 262 120 52 chr5 5991692 5991996 -146545263 + MT2B LTR ERVL 156 511 -90 7 630 387 0 0 0 chr5 5991996 5992039 -146545220 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 630 744 302 23 76 chr5 5992039 5992098 -146545161 + MT2B LTR ERVL 512 561 -40 7 630 25 31 0 0 chr5 5992149 5992181 -146545078 + AT_rich Low_complexity Low_complexity 1 32 0 7 630 234 92 30 30 chr5 5992181 5992248 -146545011 + MT2A LTR ERVL 467 533 0 7 630 230 353 73 65 chr5 5992334 5992458 -146544801 - RSINE1 SINE B4 0 165 41 7 630 429 109 0 0 chr5 5993481 5993545 -146543714 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 630 26 0 0 0 chr5 5993569 5993595 -146543664 + AT_rich Low_complexity Low_complexity 1 26 0 7 630 312 91 0 0 chr5 5993998 5994042 -146543217 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 630 564 230 7 21 chr5 5994159 5994301 -146542958 - B1_Mur2 SINE Alu -7 142 3 7 630 752 161 7 0 chr5 5994880 5995023 -146542236 + GA-rich Low_complexity Low_complexity 1 144 0 7 630 247 276 40 0 chr5 5996069 5996145 -146541114 + GA-rich Low_complexity Low_complexity 6 84 0 7 630 1061 117 17 0 chr5 5996431 5996610 -146540649 - L1_Mus3 LINE L1 -6 6632 6451 7 630 405 0 0 0 chr5 5997944 5997989 -146539270 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 630 1788 137 91 88 chr5 5998743 5999151 -146538108 + RLTR9E LTR ERVK 1 409 0 7 630 2092 83 103 31 chr5 5999202 5999420 -146537839 - MusHAL1 LINE L1 -57 2655 2414 7 630 2632 41 5 164 chr5 5999420 5999854 -146537405 - RLTR10B2 LTR ERVK 0 365 1 7 630 2092 83 103 31 chr5 5999854 5999985 -146537274 - MusHAL1 LINE L1 -299 2413 2281 7 630 1588 71 0 14 chr5 6000122 6000335 -146536924 - L1_Mus1 LINE L1 -3 6564 6355 1 630 2263 57 4 0 chr5 6000337 6000618 -146536641 + L1_Mus1 LINE L1 6082 6363 -204 1 630 15604 84 9 5 chr5 6000619 6002982 -146534277 - L1VL4 LINE L1 -428 3131 753 2 630 35593 68 5 3 chr5 6003035 6009421 -146527838 - L1Md_F2 LINE L1 -1 6581 184 3 630 3814 102 41 0 chr5 6009420 6009980 -146527279 - L1VL4 LINE L1 -5536 766 184 2 630 1553 117 14 0 chr5 6010021 6010243 -146527016 + ORR1A2 LTR MaLR 1 225 -102 4 630 215 354 66 36 chr5 6010518 6010685 -146526574 + L2a LINE L2 2331 2502 -917 5 630 185 65 32 0 chr5 6010788 6010819 -146526440 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 630 241 324 35 35 chr5 6011440 6011581 -146525678 + L2a LINE L2 3034 3174 -252 5 630 233 247 260 0 chr5 6011646 6011723 -146525536 - PB1D10 SINE Alu -19 98 2 7 630 24 53 0 0 chr5 6011751 6011789 -146525470 + AT_rich Low_complexity Low_complexity 1 38 0 8 630 189 213 0 0 chr5 6011815 6011862 -146525397 + (TATG)n Simple_repeat Simple_repeat 2 48 0 9 630 248 363 88 48 chr5 6012822 6013094 -146524165 + LTR84b LTR ERVL 467 749 -12 1 630 26 30 0 0 chr5 6013701 6013734 -146523525 + AT_rich Low_complexity Low_complexity 1 33 0 1 630 490 147 83 0 chr5 6013737 6013846 -146523413 - Lx3A LINE L1 -9 6972 6855 1 630 746 232 6 0 chr5 6014860 6015024 -146522235 - U1 snRNA snRNA 0 165 1 1 630 458 128 34 0 chr5 6016207 6016324 -146520935 + (TCTA)n Simple_repeat Simple_repeat 2 122 0 1 630 327 318 97 32 chr5 6016778 6016963 -146520296 - L2 LINE L2 -567 2852 2656 1 630 2756 84 36 26 chr5 6017445 6017862 -146519397 + BGLII LTR ERVK 1 421 0 1 630 1320 277 92 17 chr5 6018458 6019082 -146518177 - L1MA9 LINE L1 -636 5548 4865 1 630 1232 305 69 58 chr5 6019090 6019810 -146517449 + L1MA9 LINE L1 5580 6307 -5 1 630 286 42 20 20 chr5 6020219 6020268 -146516991 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 630 288 0 0 0 chr5 6020269 6020301 -146516958 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 630 569 264 62 0 chr5 6020907 6021036 -146516223 - B1_Mur2 SINE Alu -7 142 6 2 630 798 265 54 49 chr5 6021219 6021555 -146515704 + RLTR20D LTR ERVK 1 476 -102 2 630 414 0 0 0 chr5 6021555 6021601 -146515658 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 630 351 0 0 0 chr5 6021601 6021639 -146515620 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 630 434 247 119 32 chr5 6021639 6021730 -146515529 + RLTR20D LTR ERVK 437 561 -17 2 630 621 0 0 0 chr5 6021884 6021953 -146515306 + (TTC)n Simple_repeat Simple_repeat 2 70 0 2 630 245 222 0 0 chr5 6022121 6022175 -146515084 + MLT2B4 LTR ERVL 62 115 -441 2 630 248 367 40 49 chr5 6022321 6022445 -146514814 + MLT2B1 LTR ERVL 392 515 -52 2 630 254 283 0 80 chr5 6022522 6022622 -146514637 - ORR1E LTR MaLR -174 185 94 2 630 273 57 0 0 chr5 6022633 6022668 -146514591 + (CCTA)n Simple_repeat Simple_repeat 4 38 0 2 630 419 354 46 26 chr5 6022760 6022911 -146514348 + ID_B1 SINE B4 2 155 -69 2 630 954 251 10 10 chr5 6022912 6023109 -146514150 + B3 SINE B2 14 210 -6 3 630 334 253 11 44 chr5 6023118 6023209 -146514050 + ID_B1 SINE B4 137 224 0 3 630 25 0 0 0 chr5 6023441 6023466 -146513793 + AT_rich Low_complexity Low_complexity 1 25 0 3 630 14784 117 44 11 chr5 6023911 6026100 -146511159 + Lx2 LINE L1 548 2788 -1126 3 630 237 33 0 0 chr5 6026100 6026130 -146511129 + (CAA)n Simple_repeat Simple_repeat 1 30 0 3 630 14784 103 44 9 chr5 6026130 6027037 -146510222 + Lx2 LINE L1 2789 3720 -2163 3 630 663 25 0 0 chr5 6027037 6027118 -146510141 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 3 630 399 89 54 0 chr5 6027118 6027174 -146510085 - B2_Mm2 SINE B2 -135 60 2 3 630 14690 167 35 33 chr5 6027174 6027799 -146509460 + Lx2 LINE L1 3721 4334 -1549 3 78 8299 142 11 6 chr5 6027795 6029972 -146507287 + Lx2 LINE L1 4788 6976 -21 3 631 1696 64 13 13 chr5 6029974 6030210 -146507049 + L1_Mus1 LINE L1 6332 6567 0 3 631 25 51 0 0 chr5 6030247 6030286 -146506973 + AT_rich Low_complexity Low_complexity 1 39 0 3 631 718 228 0 0 chr5 6030318 6030454 -146506805 + B1_Mur1 SINE Alu 1 136 -13 3 631 1305 298 18 36 chr5 6030507 6030893 -146506366 + MTE2b LTR MaLR 1 379 0 4 631 284 235 136 0 chr5 6031013 6031094 -146506165 - PB1D7 SINE Alu -3 124 33 4 631 1367 106 56 0 chr5 6031212 6031410 -146505849 + Lx4A LINE L1 6372 6580 -478 4 631 304 230 159 11 chr5 6031443 6031531 -146505728 + MLT1B LTR MaLR 1 101 -289 4 631 630 0 0 0 chr5 6031591 6031661 -146505598 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 631 249 300 21 32 chr5 6031713 6031806 -146505453 + MLT1B LTR MaLR 297 388 -2 4 631 1270 265 85 20 chr5 6031843 6032243 -146505016 - FordPrefect DNA Tip100 -274 1409 984 4 631 398 244 23 0 chr5 6032241 6032327 -146504932 + B3 SINE B2 129 216 0 4 631 32113 83 2 1 chr5 6032331 6037551 -146499708 + L1Md_F2 LINE L1 359 5586 -297 4 631 8136 45 2 1 chr5 6037552 6038545 -146498714 + L1Md_F2 LINE L1 5588 6581 -1 4 631 417 314 36 76 chr5 6038824 6039048 -146498211 + MLT2B1 LTR ERVL 350 564 -3 4 631 364 267 104 11 chr5 6039053 6039235 -146498024 + ERVL-B4-int LTR ERVL 1 199 -5515 4 631 3199 316 82 22 chr5 6039312 6040785 -146496474 + ERVL-B4-int LTR ERVL 3609 5170 -544 4 631 228 35 0 0 chr5 6041261 6041290 -146495969 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 631 3087 140 16 1 chr5 6041321 6041812 -146495447 - MT2B2 LTR ERVL -94 490 1 5 631 332 209 202 0 chr5 6041872 6042001 -146495258 + ERVL-B4-int LTR ERVL 5322 5476 -238 5 631 558 121 0 0 chr5 6042003 6042015 -146495244 + (T)n Simple_repeat Simple_repeat 1 12 0 5 631 1045 92 0 7 chr5 6042015 6042158 -146495101 - B1_Mus2 SINE Alu -2 145 4 5 631 558 121 0 0 chr5 6042158 6042236 -146495023 + (T)n Simple_repeat Simple_repeat 1 78 0 5 631 1766 176 17 77 chr5 6042326 6042721 -146494538 + ORR1B1 LTR MaLR 27 394 0 5 631 651 286 117 10 chr5 6042754 6043070 -146494189 + MLT2B4 LTR ERVL 7 373 -91 5 631 21 57 0 0 chr5 6044193 6044228 -146493031 + AT_rich Low_complexity Low_complexity 1 35 0 5 631 1323 220 102 31 chr5 6045883 6046235 -146491024 - ORR1C2 LTR MaLR -2 382 6 5 631 471 35 0 0 chr5 6046485 6046542 -146490717 + (TTA)n Simple_repeat Simple_repeat 1 57 0 5 631 3827 182 8 31 chr5 6046723 6046903 -146490356 + Lx2 LINE L1 5125 5299 -584 6 631 3472 28 0 0 chr5 6046903 6047299 -146489960 - MTA_Mm LTR MaLR 0 396 1 6 631 9223 31 1 2 chr5 6047299 6048398 -146488861 - MTA_Mm-int LTR MaLR 0 1098 1 6 631 3925 121 75 31 chr5 6048398 6049334 -146487925 + Lx2 LINE L1 5300 6274 -723 6 631 2602 55 7 3 chr5 6049339 6049706 -146487553 - IAPEY2_LTR LTR ERVK -2 383 20 6 631 3016 126 49 0 chr5 6049719 6050189 -146487070 + Lx2 LINE L1 6326 6818 -179 6 631 23 0 0 0 chr5 6050248 6050271 -146486988 + AT_rich Low_complexity Low_complexity 1 23 0 6 631 1227 352 85 48 chr5 6051646 6052781 -146484478 + ERVL-E-int LTR ERVL 645 1820 -3847 6 631 492 278 176 21 chr5 6052883 6053258 -146484001 - L1M2 LINE L1 -1605 4538 4106 6 631 486 0 0 0 chr5 6053623 6053677 -146483582 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 631 22 35 0 0 chr5 6054117 6054146 -146483113 + AT_rich Low_complexity Low_complexity 1 29 0 6 631 810 0 0 0 chr5 6054755 6054845 -146482414 + (TTC)n Simple_repeat Simple_repeat 1 90 0 6 631 300 300 106 14 chr5 6054905 6055047 -146482212 - HAL1-3A_ME LINE L1 -420 2438 2284 6 631 21 0 0 0 chr5 6055605 6055626 -146481633 + AT_rich Low_complexity Low_complexity 1 21 0 7 631 1649 289 121 34 chr5 6055777 6056596 -146480663 + Lx8 LINE L1 6582 7471 -2 7 631 540 245 90 48 chr5 6058793 6058960 -146478299 + B4A SINE B4 119 292 0 7 631 348 24 0 0 chr5 6058965 6059006 -146478253 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 631 330 349 60 67 chr5 6060265 6060548 -146476711 - L4 LINE RTE -483 1546 1266 7 631 640 302 101 20 chr5 6060925 6061330 -146475929 - L1ME1 LINE L1 -25 6154 5717 7 631 26 0 0 0 chr5 6061797 6061823 -146475436 + AT_rich Low_complexity Low_complexity 1 26 0 7 631 332 265 52 26 chr5 6062598 6062753 -146474506 + L1ME2 LINE L1 4454 4612 -1534 7 631 1095 184 0 24 chr5 6062760 6062971 -146474288 + B3 SINE B2 5 210 -6 7 631 1104 75 0 13 chr5 6063082 6063095 -146474164 - B1_Mus2 SINE Alu 0 147 135 7 631 352 37 0 36 chr5 6063095 6063151 -146474108 + (TTTTG)n Simple_repeat Simple_repeat 1 54 0 8 631 1104 75 0 13 chr5 6063151 6063286 -146473973 - B1_Mus2 SINE Alu -13 134 1 7 631 521 107 0 64 chr5 6063303 6063413 -146473846 - L1Md_F2 LINE L1 -1 6581 6479 8 631 783 207 14 0 chr5 6063800 6063940 -146473319 + B1_Mur4 SINE Alu 1 142 -8 8 631 393 277 163 35 chr5 6063972 6064174 -146473085 + MER67C LTR ERV1 176 403 -308 8 631 835 58 65 4 chr5 6064189 6064330 -146472929 - L1_Mus2 LINE L1 -514 6053 5909 8 631 3534 73 54 2 chr5 6064331 6064812 -146472447 + L1_Mus2 LINE L1 6060 6565 -1 8 631 774 319 65 35 chr5 6065127 6065909 -146471350 + L1ME2 LINE L1 5341 6146 -18 7 631 310 263 132 19 chr5 6066155 6066314 -146470945 + L1MA10 LINE L1 4641 4817 -1329 8 631 433 58 29 0 chr5 6066546 6066615 -146470644 + (CCCCCT)n Simple_repeat Simple_repeat 3 73 0 8 631 866 294 104 66 chr5 6066648 6067697 -146469562 + L1MA10 LINE L1 5161 6258 -76 8 631 455 95 14 0 chr5 6068547 6068621 -146468638 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 8 631 1957 186 47 0 chr5 6069884 6070249 -146467010 - RLTR14 LTR ERV1 0 382 1 8 631 23 0 0 0 chr5 6071862 6071885 -146465374 + AT_rich Low_complexity Low_complexity 1 23 0 8 631 24 0 0 0 chr5 6071953 6071977 -146465282 + AT_rich Low_complexity Low_complexity 1 24 0 9 631 956 183 10 5 chr5 6072092 6072290 -146464969 - L1_Mus4 LINE L1 -9 6627 6429 9 631 5804 158 3 1 chr5 6072291 6073333 -146463926 + L1_Mm LINE L1 4840 5883 0 9 631 2675 172 2 18 chr5 6073355 6073851 -146463408 + Lx LINE L1 6096 6583 -71 9 631 27608 54 2 3 chr5 6073883 6078282 -146458977 - L1Md_F2 LINE L1 -13 6569 2174 9 631 428 158 0 0 chr5 6078282 6078364 -146458895 + Lx LINE L1 6568 6649 -5 9 631 4406 162 28 18 chr5 6078370 6079321 -146457938 + Lx5 LINE L1 3256 4216 -1664 9 631 2448 170 86 12 chr5 6079339 6079839 -146457420 - Lx4A LINE L1 0 7058 6522 9 631 7229 182 35 23 chr5 6079928 6080517 -146456742 + Lx5 LINE L1 4221 4807 -1073 9 631 3086 72 5 12 chr5 6080517 6080936 -146456323 + L1Md_F2 LINE L1 6160 6575 -7 9 631 2525 124 36 19 chr5 6080938 6081350 -146455909 - Lx3A LINE L1 -6 6975 6557 9 631 7229 182 35 23 chr5 6081350 6081452 -146455807 + Lx5 LINE L1 4808 4919 -961 9 631 789 11 0 0 chr5 6081452 6081542 -146455717 + (TA)n Simple_repeat Simple_repeat 2 91 0 9 631 7229 227 48 44 chr5 6081542 6083379 -146453880 + Lx5 LINE L1 4920 6770 -280 9 631 414 330 26 57 chr5 6083412 6083640 -146453619 - RMER2 LTR ERV1 -18 549 329 1 631 250 24 23 45 chr5 6083843 6083887 -146453372 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 631 618 275 6 17 chr5 6083938 6084119 -146453140 + Lx6 LINE L1 7256 7434 -26 1 631 371 293 144 16 chr5 6084545 6084739 -146452520 - RLTR42-int LTR ERVK -3664 1858 1640 1 631 203 54 53 26 chr5 6084746 6084784 -146452475 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 1 631 558 196 34 34 chr5 6085097 6085219 -146452040 - RLTR18-int LTR ERVK -1892 3469 3345 1 631 6329 129 62 59 chr5 6085219 6086180 -146451079 + Lx2A1 LINE L1 5803 6738 -270 1 631 189 107 0 0 chr5 6086180 6086208 -146451051 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 631 6329 129 62 59 chr5 6086208 6086444 -146450815 + Lx2A1 LINE L1 6739 7002 -6 1 631 558 196 34 34 chr5 6086444 6086469 -146450790 - RLTR18-int LTR ERVK -2017 3344 3322 1 631 6348 70 5 2 chr5 6086474 6087329 -146449930 + L1Md_F2 LINE L1 332 1188 -5428 1 631 22817 83 6 0 chr5 6087299 6090602 -146446657 + L1Md_F2 LINE L1 1981 5302 -581 1 631 4618 22 0 0 chr5 6090602 6091157 -146446102 - L1Md_T LINE L1 -259 6323 5769 1 631 2142 43 0 0 chr5 6091158 6091415 -146445844 + L1Md_T LINE L1 6325 6581 -1 1 631 2261 61 0 0 chr5 6091415 6091708 -146445551 + L1Md_F2 LINE L1 5294 5586 -297 1 631 8132 52 0 1 chr5 6091709 6092701 -146444558 + L1Md_F2 LINE L1 5589 6579 -3 1 631 447 231 48 0 chr5 6092718 6092822 -146444437 - RLTR18-int LTR ERVK -2063 3298 3190 1 631 1719 110 84 0 chr5 6092824 6093087 -146444172 + ORR1A2 LTR MaLR 1 285 -42 1 631 244 167 0 0 chr5 6093087 6093135 -146444124 + L1_Mur1 LINE L1 5414 5461 -425 1 631 551 282 127 8 chr5 6093135 6093396 -146443863 - RLTR10A LTR ERVK 0 411 104 1 631 6099 123 37 7 chr5 6093426 6094564 -146442695 + Lx LINE L1 5453 6639 -15 1 631 326 61 20 0 chr5 6094564 6094613 -146442646 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1 631 313 192 0 0 chr5 6094617 6094669 -146442590 + ORR1A1 LTR MaLR 295 346 0 1 631 682 211 63 21 chr5 6094679 6094868 -146442391 - RLTR18-int LTR ERVK -2359 3002 2806 1 631 24 59 0 42 chr5 6094897 6094968 -146442291 + AT_rich Low_complexity Low_complexity 1 68 0 1 631 46 54 0 0 chr5 6094995 6095069 -146442190 + AT_rich Low_complexity Low_complexity 1 74 0 1 631 24 0 0 0 chr5 6095244 6095268 -146441991 + AT_rich Low_complexity Low_complexity 1 24 0 1 631 234 280 83 17 chr5 6095766 6095886 -146441373 + L1MA8 LINE L1 6144 6271 -20 1 631 21 36 0 0 chr5 6096139 6096167 -146441092 + AT_rich Low_complexity Low_complexity 1 28 0 1 631 391 276 171 0 chr5 6096183 6096382 -146440877 - MER33 DNA MER1_type -82 242 10 1 631 25 0 0 0 chr5 6096533 6096558 -146440701 + AT_rich Low_complexity Low_complexity 1 25 0 1 631 415 162 75 9 chr5 6096562 6096668 -146440591 - Lx4B LINE L1 -2 7056 6944 1 631 548 181 35 0 chr5 6096668 6096784 -146440475 - RLTR18-int LTR ERVK -2713 2648 2529 1 631 217 186 0 33 chr5 6096939 6097000 -146440259 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1 631 486 0 0 0 chr5 6097069 6097123 -146440136 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 631 755 50 33 0 chr5 6097123 6097243 -146440016 + (CA)n Simple_repeat Simple_repeat 1 125 0 1 631 544 331 6 13 chr5 6097567 6097726 -146439533 - MER20 DNA MER1_type -55 164 7 1 631 3928 148 41 10 chr5 6098030 6099151 -146438108 + L1VL4 LINE L1 796 1969 -1943 1 631 582 143 17 0 chr5 6099173 6099292 -146437967 + MusHAL1 LINE L1 649 769 -1943 1 631 1923 114 45 6 chr5 6099293 6099628 -146437631 + MusHAL1 LINE L1 1455 1802 -910 1 631 5759 172 13 19 chr5 6099619 6100336 -146436923 + Lx2B LINE L1 4664 5373 -504 1 631 6488 58 2 23 chr5 6100336 6101175 -146436084 + RLTR13B2 LTR ERVK 1 822 0 1 631 5759 156 64 9 chr5 6101175 6101746 -146435513 + Lx2B LINE L1 5374 5983 -1017 1 631 3037 139 82 2 chr5 6101746 6102259 -146435000 + Lx2B LINE L1 6435 6988 -12 1 631 1542 35 5 10 chr5 6103714 6103914 -146433345 - L1Md_F2 LINE L1 -4 6578 6380 1 631 405 356 145 17 chr5 6104110 6104344 -146432915 + LTR16A LTR ERVL 122 385 -66 1 631 2740 219 14 3 chr5 6104393 6104961 -146432298 + Lx7 LINE L1 6231 6804 -892 1 631 201 74 0 0 chr5 6105126 6105153 -146432106 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 631 288 70 0 0 chr5 6105193 6105236 -146432023 + (CCTTG)n Simple_repeat Simple_repeat 2 44 0 1 631 520 111 11 11 chr5 6105237 6105328 -146431931 + (TCCCC)n Simple_repeat Simple_repeat 5 95 0 1 631 387 193 22 88 chr5 6105527 6105618 -146431641 - RSINE1 SINE B4 0 165 81 1 631 387 365 20 7 chr5 6106073 6106219 -146431040 + RSINE1 SINE B4 4 151 -14 1 631 476 93 13 0 chr5 6106225 6106300 -146430959 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 631 180 0 0 0 chr5 6106300 6106319 -146430940 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 631 293 302 217 21 chr5 6107653 6107845 -146429414 - MTEa LTR MaLR -2 377 133 1 631 1968 67 0 0 chr5 6107846 6108113 -146429146 - L1_Mus2 LINE L1 -503 6063 5797 1 631 4108 72 12 0 chr5 6108109 6108675 -146428584 + L1_Mus2 LINE L1 5236 5808 -75 1 631 936 312 39 48 chr5 6108801 6109111 -146428148 - MTE-int LTR MaLR -211 1369 1063 1 631 366 195 0 0 chr5 6109120 6109197 -146428062 + CT-rich Low_complexity Low_complexity 2 78 0 1 631 767 175 52 17 chr5 6109197 6109371 -146427888 - B2_Mm2 SINE B2 -15 180 1 1 631 415 349 189 8 chr5 6109462 6109833 -146427426 + Lx8 LINE L1 6901 7338 -135 1 631 34 42 0 0 chr5 6109976 6110024 -146427235 + AT_rich Low_complexity Low_complexity 1 48 0 1 631 420 37 0 0 chr5 6111451 6111505 -146425754 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 631 25 0 0 0 chr5 6111567 6111592 -146425667 + AT_rich Low_complexity Low_complexity 1 25 0 1 631 510 176 53 0 chr5 6111592 6111723 -146425536 - Lx9 LINE L1 -2 7642 7505 1 631 705 271 42 42 chr5 6111724 6111940 -146425319 - B4 SINE B4 -76 216 1 1 631 2839 219 20 36 chr5 6112600 6113211 -146424048 - Lx5 LINE L1 -5 7045 6445 1 631 454 156 0 0 chr5 6113211 6113288 -146423971 - 4.5SRNA scRNA scRNA -9 85 9 1 631 1346 115 50 25 chr5 6113288 6113528 -146423731 + Lx LINE L1 6404 6649 -5 1 631 2819 171 31 5 chr5 6113541 6114276 -146422983 - Lx5 LINE L1 -597 6453 5587 1 631 1472 266 43 49 chr5 6114441 6114954 -146422305 - RLTR18B LTR ERVK 0 512 3 1 631 23 0 0 0 chr5 6115450 6115473 -146421786 + AT_rich Low_complexity Low_complexity 1 23 0 1 631 375 23 0 0 chr5 6115794 6115838 -146421421 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 631 292 302 169 61 chr5 6115838 6115856 -146421403 - B4 SINE B4 -133 159 2 1 631 622 250 0 0 chr5 6115856 6115976 -146421283 - B3A SINE B2 -77 121 2 1 631 242 299 40 20 chr5 6116034 6116133 -146421126 - L1MD1 LINE L1 -155 6087 5987 1 631 231 279 59 79 chr5 6116931 6117032 -146420227 - MLT1E1A LTR MaLR -11 669 571 1 631 3436 228 76 71 chr5 6118455 6118593 -146418666 - Lx7 LINE L1 -1 7695 7546 1 631 300 27 0 0 chr5 6118593 6118630 -146418629 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 1 631 3436 228 76 71 chr5 6118630 6119539 -146417720 - Lx7 LINE L1 -151 7545 6642 1 631 22 0 0 0 chr5 6119706 6119728 -146417531 + AT_rich Low_complexity Low_complexity 1 22 0 1 631 214 162 28 42 chr5 6120081 6120152 -146417107 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 1 631 31037 91 21 41 chr5 6120222 6126557 -146410702 - L1Md_F2 LINE L1 -13 6569 380 1 631 1882 199 5 28 chr5 6127200 6127587 -146409672 + ORR1C1 LTR MaLR 1 378 0 1 631 25 51 0 0 chr5 6128807 6128846 -146408413 + AT_rich Low_complexity Low_complexity 1 39 0 1 631 1186 68 0 0 chr5 6131203 6131351 -146405908 + B1_Mus1 SINE Alu 1 148 0 1 631 5329 225 34 39 chr5 6131537 6132774 -146404485 - Lx5 LINE L1 -17 7033 5803 1 631 7032 107 9 7 chr5 6133751 6134782 -146402477 + RLTR13D4 LTR ERVK 1 1033 0 1 631 180 271 27 54 chr5 6135916 6135990 -146401269 - L2 LINE L2 -1034 2385 2314 1 631 5024 126 22 3 chr5 6135993 6136749 -146400510 + Lx3C LINE L1 6194 6964 -12 1 631 408 290 21 0 chr5 6137034 6137127 -146400132 + RSINE1 SINE B4 50 144 -21 1 631 477 0 0 0 chr5 6137145 6137198 -146400061 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 631 429 36 0 0 chr5 6137198 6137252 -146400007 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 631 211 313 0 43 chr5 6137342 6137412 -146399847 + MIR SINE MIR 110 176 -86 1 631 36965 16 0 9 chr5 6137412 6142746 -146394513 - L1Md_A LINE L1 -386 5497 214 1 631 1425 254 36 26 chr5 6142747 6143413 -146393846 - RMER19C LTR ERVK -16 886 1 1 631 264 276 91 41 chr5 6143469 6143688 -146393571 + L1M5 LINE L1 5055 5284 -862 1 631 438 268 18 0 chr5 6143724 6143837 -146393422 + PB1D10 SINE Alu 3 120 -29 1 631 573 281 75 41 chr5 6143852 6144145 -146393114 + L1M5 LINE L1 5347 5649 -795 1 631 1128 88 0 0 chr5 6144263 6144411 -146392848 - B1_Mus1 SINE Alu 0 148 1 1 631 281 245 6 19 chr5 6144728 6144886 -146392373 + (TA)n Simple_repeat Simple_repeat 1 156 0 1 631 2094 108 22 3 chr5 6145864 6146181 -146391078 - L1_Mus3 LINE L1 0 6638 6316 1 631 1417 242 75 27 chr5 6146832 6147224 -146390035 - MTD LTR MaLR 0 400 1 1 631 303 139 12 37 chr5 6147225 6147307 -146389952 + Lx9 LINE L1 7556 7635 -9 1 631 617 267 54 10 chr5 6148414 6148618 -146388641 + B3 SINE B2 1 213 -3 1 631 322 368 30 30 chr5 6149783 6149951 -146387308 + MLT1F LTR MaLR 7 174 -374 1 631 1658 167 106 9 chr5 6150047 6150397 -146386862 + ORR1C2 LTR MaLR 1 384 0 1 631 6052 128 16 1 chr5 6150686 6151609 -146385650 - Lx3C LINE L1 -8 6968 6032 1 631 2548 121 0 18 chr5 6151621 6151657 -146385602 + Lx3B LINE L1 5596 5631 -1342 1 631 4432 12 0 0 chr5 6151657 6152150 -146385109 - MT2_Mm LTR ERVL 0 493 1 1 631 2548 121 0 18 chr5 6152150 6152502 -146384757 + Lx3B LINE L1 5632 5977 -996 1 631 867 281 86 28 chr5 6152489 6152885 -146384374 - L1M2 LINE L1 -559 5753 5335 1 631 2074 83 0 0 chr5 6152874 6153162 -146384097 - MusHAL1 LINE L1 -1186 1526 1239 1 631 3928 56 14 0 chr5 6153141 6153693 -146383566 - MusHAL1 LINE L1 -2022 690 131 1 631 365 321 75 31 chr5 6153793 6154047 -146383212 - L1M4 LINE L1 -889 5257 4993 1 631 27 29 0 0 chr5 6154229 6154263 -146382996 + AT_rich Low_complexity Low_complexity 1 34 0 1 631 198 0 0 0 chr5 6154343 6154365 -146382894 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 631 340 309 0 0 chr5 6154422 6154519 -146382740 - Charlie1a DNA MER1_type -877 578 482 1 631 527 283 143 48 chr5 6154548 6154841 -146382418 - Charlie1a DNA MER1_type -1033 422 102 1 631 749 308 8 98 chr5 6154875 6155120 -146382139 + B4A SINE B4 1 223 -69 2 631 315 49 0 0 chr5 6155244 6155285 -146381974 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 631 834 358 34 3 chr5 6155337 6155693 -146381566 - Kanga1a DNA Tc2 -233 521 155 2 631 465 76 0 0 chr5 6156033 6156099 -146381160 + (TAA)n Simple_repeat Simple_repeat 3 68 0 2 631 361 276 181 0 chr5 6156443 6156548 -146380711 - B1F1 SINE Alu -8 141 18 2 631 576 317 40 37 chr5 6156796 6157094 -146380165 + L1MC LINE L1 5414 5712 -2170 2 631 21 36 0 0 chr5 6157580 6157608 -146379651 + AT_rich Low_complexity Low_complexity 1 28 0 2 631 1602 251 7 42 chr5 6158146 6158570 -146378689 - MTC LTR MaLR 0 421 13 2 631 233 368 0 0 chr5 6159295 6159363 -146377896 + B3 SINE B2 82 149 -67 2 632 25438 76 17 12 chr5 6160896 6165173 -146372086 - L1Md_F2 LINE L1 -1 6581 2286 2 632 2873 183 28 7 chr5 6165170 6165716 -146371543 - L1Md_F2 LINE L1 -5822 794 238 2 632 251 277 0 0 chr5 6165780 6165845 -146371414 + (TATG)n Simple_repeat Simple_repeat 3 67 0 2 632 236 294 19 208 chr5 6165949 6166108 -146371151 - MIR SINE MIR -20 242 114 2 632 2501 250 94 12 chr5 6166337 6167090 -146370169 - L1_Mur3 LINE L1 -57 5823 5009 2 632 654 270 93 0 chr5 6167136 6167373 -146369886 - L1_Mur3 LINE L1 -1048 4832 4574 2 632 1128 263 57 14 chr5 6167394 6167833 -146369426 - L1_Rod LINE L1 -360 5487 5030 2 632 472 293 82 52 chr5 6168762 6169032 -146368227 - B4A SINE B4 -14 278 1 2 632 375 281 0 50 chr5 6169734 6169835 -146367424 - B3A SINE B2 -102 96 1 2 632 1031 269 131 12 chr5 6169937 6170265 -146366994 + MTD LTR MaLR 1 367 -52 2 632 846 70 32 13 chr5 6170282 6170440 -146366819 + (TCTA)n Simple_repeat Simple_repeat 2 162 0 2 632 579 66 0 0 chr5 6170731 6170807 -146366452 + (TTCC)n Simple_repeat Simple_repeat 2 77 0 2 632 583 159 43 17 chr5 6170840 6170955 -146366304 - PB1D9 SINE Alu 0 120 3 2 632 2116 252 76 32 chr5 6171123 6171782 -146365477 - Lx9 LINE L1 -287 7357 6670 2 632 4185 149 21 4 chr5 6171814 6172516 -146364743 - Lx3A LINE L1 -13 6968 6255 2 632 615 243 38 52 chr5 6172578 6172865 -146364394 + Lx9 LINE L1 7362 7644 0 2 632 816 185 13 40 chr5 6173284 6173436 -146363823 - B1_Mus1 SINE Alu 0 148 1 2 632 205 29 59 0 chr5 6173676 6173710 -146363549 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 632 416 332 43 39 chr5 6174899 6175106 -146362153 + LTR79 LTR ERVL 297 504 -23 2 632 286 298 11 11 chr5 6176035 6176130 -146361129 + CT-rich Low_complexity Low_complexity 1 95 0 2 632 688 324 68 30 chr5 6176159 6176423 -146360836 - B4A SINE B4 -18 274 1 2 632 267 376 137 11 chr5 6176974 6177157 -146360102 + LTR33B LTR ERVL 79 284 -219 2 632 278 26 26 0 chr5 6177332 6177371 -146359888 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 2 632 630 318 87 87 chr5 6177373 6177638 -146359621 - B4A SINE B4 -14 278 14 2 632 291 114 0 0 chr5 6177705 6177749 -146359510 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 632 359 366 25 42 chr5 6178368 6178605 -146358654 + Lx8 LINE L1 7097 7329 -144 2 632 194 250 116 14 chr5 6180051 6180120 -146357139 - L2c LINE L2 0 3387 3312 2 632 724 119 8 8 chr5 6180309 6180436 -146356823 + Lx LINE L1 6528 6654 0 2 632 428 352 0 0 chr5 6180796 6180935 -146356324 - B1_Mur1 SINE Alu -8 141 3 2 632 3440 205 177 26 chr5 6181103 6182200 -146355059 + Lx5 LINE L1 5789 7050 0 2 632 319 256 16 0 chr5 6182236 6182312 -146354947 + MER5A1 DNA MER1_type 13 90 -76 2 632 2115 75 0 0 chr5 6182401 6182694 -146354565 + L1_Mm LINE L1 4753 5045 -838 2 632 1293 58 0 6 chr5 6182696 6182870 -146354389 + L1_Mm LINE L1 4903 5075 -808 2 632 3003 8 5 71 chr5 6184072 6184465 -146352794 + IAPLTR1_Mm LTR ERVK 1 367 0 2 632 51142 33 12 19 chr5 6184465 6190984 -146346275 + IAPEz-int LTR ERVK 8 6481 0 2 632 2938 8 5 101 chr5 6190984 6191390 -146345869 + IAPLTR1_Mm LTR ERVK 1 367 0 2 632 280 342 23 109 chr5 6191441 6191569 -146345690 + RSINE1 SINE B4 8 124 -41 2 632 441 0 0 0 chr5 6191569 6191618 -146345641 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 632 293 281 11 11 chr5 6192161 6192251 -146345008 + RLTR15 LTR ERVK 18 107 -252 2 632 675 324 76 49 chr5 6192294 6192700 -146344559 - RLTR17 LTR ERVK -74 618 202 2 632 10510 177 54 78 chr5 6192782 6193796 -146343463 - Lx5 LINE L1 -765 6285 5234 2 632 315 0 0 0 chr5 6193796 6193831 -146343428 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 632 10510 171 54 108 chr5 6193831 6194607 -146342652 - Lx5 LINE L1 -644 5233 4405 2 632 1205 214 45 28 chr5 6194607 6194903 -146342356 - ORR1B2 LTR MaLR 0 367 46 2 632 10510 171 54 108 chr5 6194903 6196082 -146341177 - Lx5 LINE L1 -644 4404 3144 2 632 1828 52 0 0 chr5 6196087 6196319 -146340940 + L1Md_F2 LINE L1 5355 5586 -297 2 632 8057 51 0 0 chr5 6196319 6197301 -146339958 + L1Md_F2 LINE L1 5587 6568 -14 2 632 261 0 0 0 chr5 6197307 6197336 -146339923 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2 632 485 206 28 9 chr5 6197358 6197466 -146339793 - ORR1B2 LTR MaLR -253 114 5 2 632 6216 188 28 4 chr5 6197468 6198816 -146338443 - L1_Mur3 LINE L1 -1478 4402 3022 2 632 1479 145 113 26 chr5 6199318 6199399 -146337860 - L1_Mur3 LINE L1 -2879 3001 2923 2 632 4541 141 22 95 chr5 6199399 6200376 -146336883 - RMER17A2 LTR ERVK 0 906 1 2 632 1479 145 113 26 chr5 6200376 6200640 -146336619 - L1_Mur3 LINE L1 -2958 2922 2626 2 632 1279 241 140 23 chr5 6200649 6201312 -146335947 - L1_Mur3 LINE L1 -6507 1221 504 2 632 2491 185 75 2 chr5 6201327 6201783 -146335476 - RLTR19 LTR ERVK -10 489 1 2 632 1788 172 55 14 chr5 6201836 6202183 -146335076 - RLTR19-int LTR ERVK -1750 4387 4027 2 632 1128 275 62 5 chr5 6202201 6202585 -146334674 - L1_Mur3 LINE L1 -7262 466 61 2 632 1210 184 56 114 chr5 6202615 6203158 -146334101 - RMER6C LTR ERVK 0 690 1 2 632 1847 170 100 7 chr5 6203303 6203806 -146333453 + L1_Mur3 LINE L1 845 1392 -4488 2 632 878 161 83 0 chr5 6204528 6204696 -146332563 + RLTR25A LTR ERVK 1 182 -921 2 632 1743 162 45 0 chr5 6204891 6205205 -146332054 + RLTR25A LTR ERVK 186 513 -590 2 632 228 67 0 0 chr5 6205242 6205272 -146331987 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2 632 5859 191 53 10 chr5 6205272 6206152 -146331107 - Lx4A LINE L1 -11 7047 6135 2 632 6578 50 10 5 chr5 6206152 6206956 -146330303 - RLTR13C2 LTR ERVK 0 808 1 2 632 5859 191 53 10 chr5 6206956 6207332 -146329927 - Lx4A LINE L1 -924 6134 5737 2 632 23 0 0 0 chr5 6207332 6207355 -146329904 + AT_rich Low_complexity Low_complexity 1 23 0 2 632 5044 69 2 0 chr5 6207356 6207997 -146329262 - L1_Mus1 LINE L1 0 6567 5926 2 632 8210 97 15 0 chr5 6208005 6209944 -146327315 - L1_Mus1 LINE L1 -1 6566 4601 2 632 36258 42 0 3 chr5 6209944 6216286 -146320973 - L1Md_T LINE L1 0 6585 226 2 632 1000 144 0 0 chr5 6216287 6216454 -146320805 - L1_Mus1 LINE L1 -1269 4614 4448 2 632 13727 140 46 32 chr5 6216446 6219173 -146318086 - Lx4A LINE L1 -138 5739 2974 2 632 5243 58 3 0 chr5 6219173 6219832 -146317427 + L1Md_F2 LINE L1 5920 6580 -2 2 632 659 118 34 0 chr5 6219838 6219957 -146317302 - L1_Mur2 LINE L1 -2272 3605 3483 2 632 835 136 6 13 chr5 6219968 6220125 -146317134 + T-rich Low_complexity Low_complexity 3 158 0 2 632 12452 121 27 7 chr5 6220129 6221531 -146315728 - L1_Mur2 LINE L1 -2394 3483 2054 2 632 279 0 0 0 chr5 6221531 6221562 -146315697 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 632 12452 121 28 6 chr5 6221562 6222433 -146314826 - L1_Mur2 LINE L1 -3824 2053 1162 2 632 33926 50 0 4 chr5 6222436 6227939 -146309320 + L1Md_Gf LINE L1 2 5424 -462 2 632 2418 89 81 13 chr5 6227963 6228348 -146308911 - IAPLTR2a LTR ERVK 0 411 1 2 632 5974 37 23 12 chr5 6228348 6229086 -146308173 - IAPEz-int LTR ERVK 0 6481 5736 2 632 2219 72 0 0 chr5 6229085 6229363 -146307896 - IAPEz-int LTR ERVK -4845 1636 1359 2 632 3382 80 39 40 chr5 6229363 6230004 -146307255 - IAPEz-int LTR ERVK -5819 662 168 2 632 244 302 0 0 chr5 6230004 6230057 -146307202 - RLTR27 LTR ERVK -34 275 223 2 632 1139 120 40 84 chr5 6230057 6230333 -146306926 - IAPEz-int LTR ERVK -7329 252 10 2 632 317 167 107 0 chr5 6230330 6230414 -146306845 - IAPEz-int LTR ERVK -1892 95 3 2 632 2395 95 81 13 chr5 6230440 6230825 -146306434 - IAPLTR2a LTR ERVK 0 411 1 2 632 1491 18 0 0 chr5 6230825 6230996 -146306263 + L1Md_A LINE L1 5416 5586 -297 2 632 8709 15 1 0 chr5 6230996 6231991 -146305268 + L1Md_A LINE L1 5587 6582 0 2 632 1154 30 0 0 chr5 6231991 6232126 -146305133 + L1Md_T LINE L1 5452 5586 -297 2 632 8467 29 0 1 chr5 6232126 6233123 -146304136 + L1Md_T LINE L1 5587 6582 0 2 632 24 32 0 0 chr5 6233123 6233154 -146304105 + AT_rich Low_complexity Low_complexity 1 31 0 2 632 3079 197 10 39 chr5 6233188 6233805 -146303454 - L1_Mur2 LINE L1 -5979 733 135 2 632 1562 186 67 70 chr5 6233809 6234196 -146303063 + RLTR25A LTR ERVK 504 889 -214 2 632 871 198 85 121 chr5 6234406 6234688 -146302571 + RLTR25A LTR ERVK 832 1103 0 2 632 27 49 0 0 chr5 6234930 6234971 -146302288 + AT_rich Low_complexity Low_complexity 1 41 0 2 632 222 124 44 22 chr5 6235156 6235247 -146302012 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 632 329 275 28 7 chr5 6235287 6235430 -146301829 - L1M2 LINE L1 -886 5257 5112 2 632 2483 175 131 19 chr5 6235431 6235725 -146301534 + RMER4B LTR ERVK 2 314 -271 2 632 4082 185 90 8 chr5 6235725 6236559 -146300700 + RMER19B LTR ERVK 1 902 0 2 632 2483 175 131 19 chr5 6236559 6236789 -146300470 + RMER4B LTR ERVK 315 584 -1 2 632 369 261 41 53 chr5 6237018 6237188 -146300071 - L1M2 LINE L1 -1133 5010 4843 2 632 3288 203 33 6 chr5 6237184 6237829 -146299430 + Lx7 LINE L1 6314 6975 -721 2 632 2007 225 78 23 chr5 6237827 6238074 -146299185 + Lx7 LINE L1 7090 7353 -343 2 632 1187 27 13 0 chr5 6238074 6238224 -146299035 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 2 632 2007 225 78 23 chr5 6238224 6238549 -146298710 + Lx7 LINE L1 7354 7693 -3 2 632 267 311 83 17 chr5 6238582 6238762 -146298497 - L1M2 LINE L1 -2033 4107 3916 2 632 459 0 0 0 chr5 6238823 6238874 -146298385 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 632 280 278 84 34 chr5 6239020 6239258 -146298001 - L1M2 LINE L1 -2751 3392 3143 2 632 2413 212 27 4 chr5 6239449 6239961 -146297298 - RLTR12B LTR ERVK 0 528 5 2 632 1004 262 167 92 chr5 6240395 6240929 -146296330 - RMER4B LTR ERVK -11 574 1 2 632 311 277 122 22 chr5 6240929 6241158 -146296101 - L1M2 LINE L1 -3154 2986 2735 2 632 1875 205 67 13 chr5 6241163 6241549 -146295710 + MTC LTR MaLR 15 421 0 2 632 238 277 75 56 chr5 6241619 6241802 -146295457 - L1M2 LINE L1 -3187 2660 2466 2 632 315 187 130 9 chr5 6241900 6242008 -146295251 - L1M4 LINE L1 -3834 2312 2192 2 632 258 22 42 42 chr5 6242714 6242762 -146294497 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 2 632 601 126 17 0 chr5 6242874 6242993 -146294266 + L1_Mus3 LINE L1 6504 6624 -14 2 632 1194 54 0 18 chr5 6242992 6243142 -146294117 + L1Md_F2 LINE L1 6416 6563 -19 2 632 366 23 0 0 chr5 6243142 6243185 -146294074 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 632 1194 54 0 18 chr5 6243185 6243203 -146294056 + L1Md_F2 LINE L1 6564 6581 -1 2 632 787 241 10 156 chr5 6243439 6243734 -146293525 + MTEb LTR MaLR 127 378 -1 2 632 987 98 0 8 chr5 6244184 6244318 -146292941 - B1_Mus1 SINE Alu -14 134 2 2 632 858 315 68 63 chr5 6244321 6245031 -146292228 + Zaphod DNA Tip100 698 1409 -2622 2 632 4512 137 39 3 chr5 6245031 6245779 -146291480 + Lx2B LINE L1 6222 6996 -4 2 632 858 315 68 63 chr5 6245779 6245925 -146291334 + Zaphod DNA Tip100 1410 1558 -2473 2 632 966 265 66 32 chr5 6246043 6246480 -146290779 - L1MA6 LINE L1 -104 6196 5745 2 632 282 243 153 0 chr5 6246611 6246722 -146290537 - L1MA6 LINE L1 -799 5501 5374 2 632 354 234 136 31 chr5 6246943 6247157 -146290102 + L1MA9 LINE L1 5775 6029 -283 2 632 635 329 178 45 chr5 6247547 6248357 -146288902 + Zaphod DNA Tip100 1864 2781 -1250 2 632 379 320 65 79 chr5 6248379 6248443 -146288816 + Zaphod DNA Tip100 3114 3178 -853 2 632 2995 18 12 0 chr5 6248443 6248785 -146288474 - ORR1A0 LTR MaLR 0 346 1 2 632 379 320 65 79 chr5 6248785 6249514 -146287745 + Zaphod DNA Tip100 3179 3895 -136 2 632 2727 248 146 19 chr5 6249524 6250678 -146286581 - Lx9 LINE L1 -1596 6048 4714 2 632 461 260 94 60 chr5 6250679 6250912 -146286347 + L1_Rod LINE L1 4046 4286 -1561 3 632 2315 219 18 45 chr5 6250916 6251467 -146285792 - Lx9 LINE L1 -270 7374 6839 3 632 720 195 151 29 chr5 6251471 6251709 -146285550 + Lx9 LINE L1 7378 7644 0 3 632 228 67 0 0 chr5 6251981 6252011 -146285248 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 632 313 344 77 13 chr5 6252245 6252401 -146284858 - MIR SINE MIR -31 231 66 3 632 3622 121 12 32 chr5 6255089 6255143 -146282116 + Lx3A LINE L1 6380 6433 -548 3 632 3274 40 2 12 chr5 6255143 6255543 -146281716 + MTA_Mm LTR MaLR 1 396 0 3 632 3622 121 12 32 chr5 6255543 6256086 -146281173 + Lx3A LINE L1 6434 6965 -16 3 632 351 0 0 0 chr5 6256089 6256128 -146281131 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 632 983 248 112 70 chr5 6256312 6256519 -146280740 - ORR1D1 LTR MaLR -3 371 171 3 632 707 46 37 0 chr5 6256519 6256627 -146280632 + (GA)n Simple_repeat Simple_repeat 1 112 0 3 632 983 248 112 70 chr5 6256627 6256775 -146280484 - ORR1D1 LTR MaLR -204 170 1 3 632 434 298 37 37 chr5 6257100 6257264 -146279995 + ORR1E LTR MaLR 8 171 -188 3 632 2541 94 119 32 chr5 6257333 6257770 -146279489 + IAPLTR2_Mm LTR ERVK 1 475 0 3 632 4724 68 13 47 chr5 6257771 6258448 -146278811 + IAPEz-int LTR ERVK 9 662 -5819 3 632 967 59 0 0 chr5 6258448 6258567 -146278692 + IAPEz-int LTR ERVK 1359 1477 -5004 3 632 1842 107 8 0 chr5 6258562 6258814 -146278445 + IAPEz-int LTR ERVK 2244 2497 -5183 3 632 932 73 24 0 chr5 6258811 6258934 -146278325 + IAPEz-int LTR ERVK 4785 4910 -2770 3 632 26275 14 5 0 chr5 6258934 6261877 -146275382 + IAPEz-int LTR ERVK 3525 6481 0 3 632 2502 102 119 32 chr5 6261877 6262314 -146274945 + IAPLTR2_Mm LTR ERVK 1 475 0 3 632 351 232 12 35 chr5 6262314 6262399 -146274860 + ORR1E LTR MaLR 265 347 -32 3 632 645 306 21 0 chr5 6263122 6263364 -146273895 - L1MA5 LINE L1 -9 6291 6045 3 632 680 227 40 11 chr5 6263615 6263829 -146273430 - Lx4B LINE L1 -1 7057 6749 3 632 21 57 0 0 chr5 6264208 6264243 -146273016 + AT_rich Low_complexity Low_complexity 1 35 0 3 632 371 56 19 0 chr5 6264370 6264424 -146272835 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 632 600 14 0 0 chr5 6265040 6265109 -146272150 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 632 21 89 0 0 chr5 6266475 6266531 -146270728 + AT_rich Low_complexity Low_complexity 1 56 0 3 632 449 212 47 0 chr5 6267444 6267529 -146269730 + B1F2 SINE Alu 24 112 -37 3 632 23 33 0 0 chr5 6267609 6267639 -146269620 + AT_rich Low_complexity Low_complexity 1 30 0 3 632 399 250 36 57 chr5 6268288 6268428 -146268831 - Lx9 LINE L1 -322 7322 7186 3 632 251 259 85 42 chr5 6268450 6268615 -146268644 + Lx9 LINE L1 7464 7635 -9 3 632 189 0 0 0 chr5 6269957 6269978 -146267281 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 632 3239 164 129 0 chr5 6270342 6270994 -146266265 - L1_Mur1 LINE L1 -105 5781 5046 3 632 423 239 43 21 chr5 6270996 6271137 -146266122 + Lx2B LINE L1 6857 7000 0 3 632 522 282 60 11 chr5 6271451 6271634 -146265625 + LTR40b LTR ERVL 223 414 -48 3 632 539 269 141 12 chr5 6271688 6271929 -146265330 - RLTR10A LTR ERVK 0 411 140 3 632 1757 221 13 28 chr5 6271970 6272458 -146264801 - RLTR45-int LTR ERVK -202 7042 6523 3 632 2289 329 49 40 chr5 6272586 6274508 -146262751 - IAP-d-int LTR ERVK -1335 5207 3268 3 632 293 208 0 0 chr5 6274565 6274637 -146262622 - IAP-d-int LTR ERVK -4230 3351 3280 3 632 964 283 55 45 chr5 6274637 6275129 -146262130 - IAP-d-int LTR ERVK -3833 2709 2213 3 632 258 211 54 32 chr5 6275221 6275314 -146261945 - IAP-d-int LTR ERVK -6389 153 59 3 632 404 202 61 52 chr5 6275300 6275415 -146261844 - RLTR45-int LTR ERVK -1554 433 318 3 632 533 245 150 33 chr5 6275431 6275679 -146261580 - RLTR10A LTR ERVK 0 411 114 3 632 468 0 0 0 chr5 6276956 6277008 -146260251 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 3 632 270 0 0 0 chr5 6277322 6277352 -146259907 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 632 399 113 0 0 chr5 6277816 6277878 -146259381 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 632 1161 286 27 12 chr5 6278163 6278499 -146258760 - Lx7 LINE L1 -525 7171 6831 3 632 284 307 38 22 chr5 6279194 6279377 -146257882 + RLTR45-int LTR ERVK 181 366 -6878 3 632 2309 154 138 39 chr5 6279538 6280052 -146257207 + ETnERV2-int LTR ERVK 255 819 -4587 3 632 734 142 25 0 chr5 6280056 6280176 -146257083 + ETnERV2-int LTR ERVK 938 1060 -5077 3 632 873 200 0 6 chr5 6280189 6280345 -146256914 + ETnERV2-int LTR ERVK 2454 2608 -4798 3 632 5582 165 75 33 chr5 6280345 6282169 -146255090 + ETnERV2-int LTR ERVK 1995 5465 -1779 3 632 1076 318 20 1 chr5 6282663 6283059 -146254200 + ETnERV2-int LTR ERVK 7411 7762 -455 3 632 394 303 6 84 chr5 6283108 6283274 -146253985 + ETnERV2-int LTR ERVK 6494 6646 -760 3 632 4100 101 21 2 chr5 6284214 6284789 -146252470 - Lx3_Mus LINE L1 -28 6981 6396 3 632 1330 70 0 0 chr5 6284788 6284960 -146252299 - Lx3_Mus LINE L1 -1105 5876 5705 3 632 708 69 0 0 chr5 6284962 6285049 -146252210 + Lx3_Mus LINE L1 5613 5699 -1310 3 632 373 235 9 155 chr5 6285488 6285604 -146251655 + B1_Mur1 SINE Alu 18 116 -33 3 632 264 328 101 51 chr5 6286199 6286337 -146250922 + MER2 DNA MER2_type 4 148 -197 3 632 585 0 0 0 chr5 6286461 6286526 -146250733 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 632 405 0 0 0 chr5 6286526 6286570 -146250689 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 632 21 57 0 0 chr5 6286855 6286890 -146250369 + AT_rich Low_complexity Low_complexity 1 35 0 3 632 21 36 0 0 chr5 6287167 6287195 -146250064 + AT_rich Low_complexity Low_complexity 1 28 0 3 632 531 307 71 7 chr5 6287466 6287735 -146249524 - L1MB7 LINE L1 -45 6139 5854 3 632 482 153 16 0 chr5 6287764 6287888 -146249371 + (TCTA)n Simple_repeat Simple_repeat 4 129 0 3 632 3082 52 31 0 chr5 6288014 6288398 -146248861 + MTA_Mm LTR MaLR 1 396 0 3 632 446 323 63 27 chr5 6288619 6288842 -146248417 + MER31B LTR ERV1 193 423 -43 3 632 489 17 0 0 chr5 6289171 6289229 -146248030 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 632 194 281 78 0 chr5 6289271 6289335 -146247924 - L3 LINE CR1 -2270 2219 2151 3 632 604 172 0 14 chr5 6290123 6290270 -146246989 + (TA)n Simple_repeat Simple_repeat 2 146 0 3 632 342 0 0 0 chr5 6290328 6290366 -146246893 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 632 21 71 0 0 chr5 6290626 6290668 -146246591 + AT_rich Low_complexity Low_complexity 1 42 0 3 632 1294 325 90 10 chr5 6290843 6291443 -146245816 - Lx8 LINE L1 0 7473 6826 3 633 203 192 19 0 chr5 6291573 6291625 -146245634 + T-rich Low_complexity Low_complexity 1 53 0 3 633 5706 229 67 7 chr5 6291993 6293386 -146243873 - Lx9 LINE L1 -1 7643 6168 3 633 279 0 0 0 chr5 6294800 6294831 -146242428 + (A)n Simple_repeat Simple_repeat 1 31 0 3 633 302 344 32 21 chr5 6295350 6295445 -146241814 - MER82 DNA MER2_type -111 542 447 3 633 719 194 32 0 chr5 6295922 6296046 -146241213 - B3 SINE B2 -86 130 3 3 633 411 283 75 85 chr5 6296053 6296428 -146240831 - L1MA7 LINE L1 0 6291 5921 3 633 1069 272 54 31 chr5 6296436 6296785 -146240474 - MER82 DNA MER2_type -274 379 23 3 633 399 334 54 75 chr5 6296787 6297175 -146240084 + Charlie7 DNA MER1_type 307 686 -1926 3 633 372 267 248 49 chr5 6298511 6298818 -146238441 - RLTR9A LTR ERVK 0 368 1 3 633 2254 196 20 2 chr5 6298889 6299293 -146237966 + MTC LTR MaLR 11 421 0 3 633 1052 217 23 14 chr5 6299292 6299507 -146237752 + MTC-int LTR MaLR 2 218 -1040 3 633 1120 68 7 0 chr5 6299554 6299700 -146237559 + B1_Mus1 SINE Alu 2 148 0 3 633 1890 251 25 23 chr5 6299744 6300266 -146236993 + Lx6 LINE L1 5781 6303 -1157 3 633 1785 101 0 16 chr5 6300261 6300512 -146236747 - L1_Mm LINE L1 -213 5670 5424 3 633 246 179 0 0 chr5 6300642 6300681 -146236578 + B1_Mus2 SINE Alu 1 39 -108 3 633 216 0 0 0 chr5 6300903 6300927 -146236332 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 3 633 1117 68 0 7 chr5 6301691 6301838 -146235421 + B1_Mus2 SINE Alu 2 147 0 3 633 243 57 69 28 chr5 6301838 6301910 -146235349 + A-rich Low_complexity Low_complexity 1 75 0 3 633 402 296 32 78 chr5 6302556 6302710 -146234549 + MER5A DNA MER1_type 7 153 -36 3 633 195 42 0 0 chr5 6302780 6302804 -146234455 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 633 352 256 109 42 chr5 6303143 6303335 -146233924 + ERVL-B4-int LTR ERVL 4238 4442 -1272 3 633 473 361 0 48 chr5 6303751 6303952 -146233307 + MLT2B1 LTR ERVL 149 340 -214 3 633 183 80 0 0 chr5 6303952 6303977 -146233282 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 3 633 227 235 35 12 chr5 6304427 6304513 -146232746 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 3 633 282 312 79 30 chr5 6304710 6304875 -146232384 - MLT1D LTR MaLR -332 173 1 3 633 449 259 190 10 chr5 6305157 6305231 -146232028 + Lx7 LINE L1 7461 7564 -132 3 633 221 0 35 0 chr5 6305231 6305260 -146231999 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 3 633 449 259 190 10 chr5 6305260 6305380 -146231879 + Lx7 LINE L1 7565 7689 -7 3 633 576 0 0 0 chr5 6307084 6307148 -146230111 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 633 300 158 0 0 chr5 6307948 6308024 -146229235 + T-rich Low_complexity Low_complexity 1 76 0 3 633 821 79 167 0 chr5 6308024 6308150 -146229109 - B1_Mus1 SINE Alu 0 148 2 3 633 576 0 0 0 chr5 6308277 6308341 -146228918 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 633 1137 252 45 84 chr5 6308341 6308414 -146228845 + ORR1D1 LTR MaLR 3 76 -298 3 633 2383 79 47 6 chr5 6308414 6308757 -146228502 + L1_Mus3 LINE L1 6276 6632 -6 3 633 1137 252 45 84 chr5 6308757 6309064 -146228195 + ORR1D1 LTR MaLR 77 368 -6 3 633 299 223 122 78 chr5 6309074 6309254 -146228005 - MLT2B1 LTR ERVL -22 533 346 3 633 36080 72 18 7 chr5 6309483 6315398 -146221861 - L1Md_F2 LINE L1 -1 6581 566 3 633 3511 15 2 0 chr5 6315398 6315793 -146221466 + MTA_Mm LTR MaLR 1 396 0 3 633 1609 248 147 44 chr5 6315793 6315953 -146221306 - L1Md_F2 LINE L1 -6073 565 409 3 633 2865 87 19 7 chr5 6317632 6318048 -146219211 + BGLII LTR ERVK 1 421 0 3 633 596 119 35 0 chr5 6318435 6318549 -146218710 + RMER3D-int LTR ERVK 486 583 -2259 3 633 306 67 16 62 chr5 6318550 6318614 -146218645 + (GGAAA)n Simple_repeat Simple_repeat 5 65 0 3 633 1759 169 130 13 chr5 6318640 6319035 -146218224 + RMER3D-int LTR ERVK 1015 1435 -1407 3 633 869 68 8 0 chr5 6319035 6319153 -146218106 + B1_Mus1 SINE Alu 29 147 -1 3 633 404 82 16 0 chr5 6319178 6319239 -146218020 + (GAAAA)n Simple_repeat Simple_repeat 2 63 0 3 633 3133 192 58 49 chr5 6319239 6320111 -146217148 + RMER3D-int LTR ERVK 1958 2837 -5 3 633 2891 91 5 7 chr5 6320116 6320538 -146216721 + BGLII LTR ERVK 1 421 0 3 633 225 0 0 0 chr5 6320901 6320926 -146216333 + (A)n Simple_repeat Simple_repeat 1 25 0 3 633 902 163 149 25 chr5 6321036 6321237 -146216022 + URR1A DNA MER1_type 1 226 0 3 633 1369 206 57 1 chr5 6323325 6323606 -146213653 - Lx4B LINE L1 -528 6522 6027 3 633 4632 186 19 29 chr5 6323594 6324841 -146212418 - Lx4B LINE L1 -862 6196 4944 3 633 4334 180 54 5 chr5 6324834 6325711 -146211548 + Lx4B LINE L1 3919 4838 -1039 3 633 306 0 0 0 chr5 6326477 6326511 -146210748 + (T)n Simple_repeat Simple_repeat 1 34 0 3 633 225 154 0 0 chr5 6326751 6326790 -146210469 + MT2A LTR ERVL 1 39 -494 3 633 384 317 26 42 chr5 6326857 6327048 -146210211 + MT2A LTR ERVL 193 380 -153 3 633 350 322 122 28 chr5 6328048 6328262 -146208997 + Cheshire DNA MER1_type 1 234 -2186 3 633 1201 246 59 90 chr5 6328463 6328922 -146208337 - RMER16 LTR ERVK 0 533 1 3 633 5103 110 57 4 chr5 6328922 6329708 -146207551 - RMER16-int LTR ERVK 0 5406 4579 3 633 1725 221 55 81 chr5 6329710 6330168 -146207091 + RLTR41 LTR ERV1 1 446 0 3 633 17785 115 46 10 chr5 6330177 6331893 -146205366 - RMER16-int LTR ERVK -828 4578 2818 3 633 8449 3 0 0 chr5 6331893 6332827 -146204432 + L1Md_A LINE L1 5649 6582 0 4 633 17785 122 46 18 chr5 6332827 6334534 -146202725 - RMER16-int LTR ERVK -2589 2817 1062 3 633 2469 93 60 23 chr5 6334534 6334920 -146202339 + MTB LTR MaLR 1 400 0 4 633 11168 136 46 33 chr5 6334920 6335204 -146202055 - RMER16-int LTR ERVK -4345 1061 798 3 633 1806 127 16 29 chr5 6335207 6335516 -146201743 + L1_Mur2 LINE L1 4106 4410 -1467 4 633 189 0 0 0 chr5 6336301 6336322 -146200937 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 633 960 151 7 0 chr5 6336414 6336560 -146200699 + B1_Mus1 SINE Alu 2 148 0 4 633 426 39 0 0 chr5 6336563 6336615 -146200644 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 4 633 432 184 243 18 chr5 6336906 6337017 -146200242 + MT2A LTR ERVL 192 327 -206 4 633 270 0 0 0 chr5 6337036 6337066 -146200193 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 633 315 267 10 0 chr5 6337492 6337593 -146199666 + (TCTA)n Simple_repeat Simple_repeat 2 103 0 4 633 3373 105 10 0 chr5 6339707 6340191 -146197068 + L1Md_F LINE L1 231 719 -5800 4 633 2366 54 6 3 chr5 6340191 6340505 -146196754 + L1Md_F2 LINE L1 6268 6582 0 4 633 191 36 36 0 chr5 6341043 6341071 -146196188 + (ATG)n Simple_repeat Simple_repeat 2 30 0 4 633 246 425 36 10 chr5 6341100 6341402 -146195857 + L1MDa LINE L1 261 570 -6063 4 633 5441 128 9 8 chr5 6341614 6342815 -146194444 - Lx LINE L1 -212 6442 5244 4 633 5120 122 33 4 chr5 6342815 6343610 -146193649 + Lx2B LINE L1 6174 6991 -9 4 633 338 0 0 23 chr5 6345293 6345336 -146191923 + (TTA)n Simple_repeat Simple_repeat 1 42 0 4 633 985 369 55 9 chr5 6345624 6346109 -146191150 - MT2A LTR ERVL 0 601 10 4 633 392 363 94 4 chr5 6346773 6347008 -146190251 - Lx8 LINE L1 -292 7181 6926 4 633 1192 262 206 32 chr5 6347092 6347533 -146189726 + RLTR20D LTR ERVK 51 568 0 4 633 276 209 164 0 chr5 6347540 6347607 -146189652 - Lx8 LINE L1 -616 6857 6780 4 633 461 241 0 53 chr5 6347996 6348110 -146189149 + PB1 SINE Alu 13 120 -7 4 633 562 356 79 53 chr5 6348145 6348792 -146188467 + L2 LINE L2 1472 2135 -1284 4 633 25 0 0 0 chr5 6349521 6349546 -146187713 + AT_rich Low_complexity Low_complexity 1 25 0 4 633 688 320 96 80 chr5 6350482 6351115 -146186144 - Lx9 LINE L1 -321 7323 6529 4 633 395 38 19 0 chr5 6351136 6351189 -146186070 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 633 411 171 0 0 chr5 6351189 6351265 -146185994 + (TA)n Simple_repeat Simple_repeat 1 76 0 4 633 315 0 0 0 chr5 6352514 6352549 -146184710 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 633 180 186 0 0 chr5 6352891 6352950 -146184309 + A-rich Low_complexity Low_complexity 1 59 0 4 633 1065 114 0 49 chr5 6353218 6353402 -146183857 - L1_Mur1 LINE L1 -673 5213 5039 4 633 5812 100 8 8 chr5 6353402 6354257 -146183002 + Lx3A LINE L1 6124 6978 -3 4 633 31 0 0 0 chr5 6355958 6355989 -146181270 + AT_rich Low_complexity Low_complexity 1 31 0 4 633 211 245 0 19 chr5 6357134 6357188 -146180071 + CT-rich Low_complexity Low_complexity 4 56 0 4 633 405 0 0 0 chr5 6357352 6357397 -146179862 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 633 838 296 34 13 chr5 6357493 6357726 -146179533 - B4A SINE B4 -14 278 41 4 633 5918 84 22 2 chr5 6360380 6361191 -146176068 + L1_Mus4 LINE L1 5807 6633 -3 4 633 1997 57 0 0 chr5 6361764 6362012 -146175247 + L1Md_T LINE L1 6335 6582 0 4 633 192 111 0 0 chr5 6363508 6363544 -146173715 + (T)n Simple_repeat Simple_repeat 1 36 0 4 633 713 208 180 0 chr5 6364407 6364590 -146172669 - B3 SINE B2 0 216 1 4 633 28 0 0 0 chr5 6364679 6364707 -146172552 + AT_rich Low_complexity Low_complexity 1 28 0 4 633 289 335 18 95 chr5 6364844 6364896 -146172363 - B3 SINE B2 -2 214 167 4 633 603 39 0 0 chr5 6364896 6364974 -146172285 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 633 307 288 54 42 chr5 6364974 6365089 -146172170 - B3A SINE B2 -31 167 60 4 633 588 227 9 0 chr5 6365098 6365208 -146172051 - B3 SINE B2 -103 113 3 4 633 1114 95 0 0 chr5 6365711 6365859 -146171400 + B1_Mus1 SINE Alu 1 148 0 4 633 286 172 73 8 chr5 6365898 6366106 -146171153 + (TA)n Simple_repeat Simple_repeat 1 221 0 4 633 22 35 0 0 chr5 6366129 6366158 -146171101 + AT_rich Low_complexity Low_complexity 1 29 0 4 633 409 254 28 28 chr5 6366173 6366315 -146170944 + Lx9 LINE L1 4953 5094 -753 4 633 1198 276 49 16 chr5 6366351 6366810 -146170449 + Lx9 LINE L1 5464 5982 -1662 4 633 265 189 70 8 chr5 6366948 6367076 -146170183 + (TA)n Simple_repeat Simple_repeat 1 136 0 4 633 185 158 12 35 chr5 6367104 6367189 -146170070 + T-rich Low_complexity Low_complexity 5 87 0 4 633 36 23 0 0 chr5 6367189 6367232 -146170027 + AT_rich Low_complexity Low_complexity 1 43 0 4 633 296 244 78 43 chr5 6367270 6367411 -146169848 + Lx9 LINE L1 6252 6397 -1247 4 633 2191 235 59 20 chr5 6367610 6368280 -146168979 - Lx6 LINE L1 -628 6422 5703 4 633 889 271 171 13 chr5 6368281 6368662 -146168597 - RLTR45 LTR ERVK 0 482 42 4 633 5289 198 50 8 chr5 6368733 6369864 -146167395 - Lx6 LINE L1 -173 5704 4527 4 633 2563 254 80 46 chr5 6369863 6370605 -146166654 + Lx6 LINE L1 6666 7432 -28 4 633 415 237 99 72 chr5 6370641 6370864 -146166395 - Lx9 LINE L1 -272 6031 5770 4 633 432 0 0 0 chr5 6370868 6370916 -146166343 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 633 291 93 0 0 chr5 6370920 6370963 -146166296 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 4 633 397 343 103 39 chr5 6371030 6371312 -146165947 + MTB LTR MaLR 11 310 -90 4 633 490 290 143 26 chr5 6371351 6371531 -146165728 - Lx9 LINE L1 -213 5667 5420 4 633 429 70 0 0 chr5 6371531 6371588 -146165671 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 633 499 260 75 21 chr5 6371588 6371898 -146165361 - Lx9 LINE L1 -428 5419 5079 4 633 201 154 0 0 chr5 6372071 6372110 -146165149 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 4 633 483 198 10 19 chr5 6372111 6372214 -146165045 - B1_Mur4 SINE Alu -1 149 48 4 633 8389 33 0 2 chr5 6372241 6373390 -146163869 - L1Md_F2 LINE L1 -13 6569 5423 4 633 828 56 0 0 chr5 6373456 6373564 -146163695 - L1_Mus3 LINE L1 -521 6117 6010 4 633 332 336 21 42 chr5 6374043 6374186 -146163073 - MLT1G LTR MaLR -202 389 250 4 633 225 389 133 0 chr5 6375193 6375404 -146161855 - L2 LINE L2 -498 2921 2683 4 633 1100 82 0 20 chr5 6375429 6375579 -146161680 + B1_Mus1 SINE Alu 2 148 0 4 633 524 342 96 23 chr5 6377503 6377805 -146159454 - RMER15 LTR ERVL -32 543 220 4 633 4585 143 34 2 chr5 6377929 6378716 -146158543 + Lx2 LINE L1 6186 6997 0 4 633 53 40 0 0 chr5 6379408 6379482 -146157777 + AT_rich Low_complexity Low_complexity 1 74 0 4 633 25 0 0 0 chr5 6380129 6380154 -146157105 + AT_rich Low_complexity Low_complexity 1 25 0 4 633 399 370 22 0 chr5 6380225 6380406 -146156853 - L1MB5 LINE L1 -34 6140 5956 4 633 1946 114 15 51 chr5 6380458 6380496 -146156763 - Lx LINE L1 -1 6653 6628 4 633 1000 84 0 34 chr5 6380496 6380644 -146156615 - B1_Mus1 SINE Alu -1 147 5 4 633 1946 114 15 51 chr5 6380644 6380939 -146156320 - Lx LINE L1 -27 6627 6332 4 633 2332 226 112 108 chr5 6380942 6381410 -146155849 - RMER17B LTR ERVK -12 946 519 4 633 2369 27 3 29 chr5 6381410 6381717 -146155542 - L1Md_F2 LINE L1 0 6582 6284 4 633 2332 226 112 108 chr5 6381717 6382184 -146155075 - RMER17B LTR ERVK -440 518 8 4 633 5357 108 28 20 chr5 6382190 6383238 -146154021 - Lx LINE L1 -308 6346 5273 4 633 393 22 0 0 chr5 6383291 6383337 -146153922 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 633 415 277 8 82 chr5 6383503 6383625 -146153634 - B3 SINE B2 -99 117 5 4 633 334 359 39 0 chr5 6383625 6383728 -146153531 - B4A SINE B4 -58 234 128 4 633 787 287 41 41 chr5 6383727 6383945 -146153314 - B4 SINE B4 -70 222 5 4 633 412 356 56 89 chr5 6384053 6384355 -146152904 + B4 SINE B4 1 292 0 4 633 213 280 0 0 chr5 6384368 6384418 -146152841 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 633 350 364 92 7 chr5 6384469 6384610 -146152649 + RSINE1 SINE B4 11 163 -2 4 633 209 375 43 22 chr5 6386776 6386915 -146150344 + MIR SINE MIR 61 202 -60 4 633 324 88 33 50 chr5 6389389 6389449 -146147810 + Lx9 LINE L1 7409 7467 -177 4 633 562 145 57 0 chr5 6389588 6389747 -146147512 - Lx9 LINE L1 -1 7643 7476 4 633 189 74 0 0 chr5 6389747 6389774 -146147485 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 633 333 0 0 0 chr5 6389773 6389810 -146147449 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 633 2769 93 5 10 chr5 6389951 6390342 -146146917 - Lx3_Mus LINE L1 0 7009 6621 4 633 635 115 8 0 chr5 6390342 6390440 -146146819 + Lx3_Mus LINE L1 6513 6620 -389 4 633 567 346 91 24 chr5 6390597 6391059 -146146200 + RMER5 LTR ERV1 40 532 -2 4 633 2152 118 10 0 chr5 6391526 6391832 -146145427 - RLTR27 LTR ERVK 0 309 1 4 633 23 0 0 0 chr5 6392369 6392392 -146144867 + AT_rich Low_complexity Low_complexity 1 23 0 4 633 407 19 0 19 chr5 6392423 6392476 -146144783 + (CATAT)n Simple_repeat Simple_repeat 2 53 0 4 633 513 0 0 0 chr5 6392476 6392533 -146144726 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 4 633 688 325 77 19 chr5 6392548 6392965 -146144294 - Lx8 LINE L1 -62 7411 6971 4 633 2557 84 16 19 chr5 6393107 6393377 -146143882 - L1_Mus3 LINE L1 0 6638 6369 4 633 2892 79 13 10 chr5 6393377 6393772 -146143487 + MTA_Mm LTR MaLR 1 396 0 4 633 2557 84 16 19 chr5 6393772 6393877 -146143382 - L1_Mus3 LINE L1 -270 6368 6264 4 633 26 30 0 0 chr5 6394680 6394713 -146142546 + AT_rich Low_complexity Low_complexity 1 33 0 4 633 298 278 42 51 chr5 6395605 6395747 -146141512 + MER5A DNA MER1_type 1 137 -29 4 633 286 238 22 103 chr5 6396039 6396175 -146141084 - Lx5 LINE L1 -5 7045 6921 4 633 792 306 58 0 chr5 6396166 6396444 -146140815 - Lx5 LINE L1 -757 6293 6000 4 633 37848 30 0 0 chr5 6396457 6402668 -146134591 - L1Md_T LINE L1 0 6585 278 4 633 18772 181 32 73 chr5 6402669 6404433 -146132826 - Lx5 LINE L1 -1040 6010 4192 4 633 405 0 0 0 chr5 6404433 6404478 -146132781 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 633 18772 180 33 78 chr5 6404478 6405988 -146131271 - Lx5 LINE L1 -1686 4191 2632 4 633 573 15 0 0 chr5 6405988 6406054 -146131205 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 633 18772 180 33 78 chr5 6406054 6407470 -146129789 - Lx5 LINE L1 -3246 2631 1517 4 633 1973 150 77 8 chr5 6407773 6408150 -146129109 - RLTR9E LTR ERVK -6 403 1 5 633 473 0 18 0 chr5 6408309 6408366 -146128893 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 5 633 279 54 0 0 chr5 6409931 6409968 -146127291 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 633 21 0 0 0 chr5 6410353 6410374 -146126885 + AT_rich Low_complexity Low_complexity 1 21 0 5 633 570 129 151 0 chr5 6410437 6410530 -146126729 + U6 snRNA snRNA 1 107 0 5 633 5698 74 97 1 chr5 6410530 6411331 -146125928 + L1_Mus3 LINE L1 5756 6633 -5 5 633 198 0 0 0 chr5 6412025 6412047 -146125212 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 5 633 932 186 94 14 chr5 6412047 6412270 -146124989 - Lx7 LINE L1 -7 7689 7449 5 633 764 215 90 0 chr5 6412282 6412482 -146124777 - L1_Mur3 LINE L1 -1673 4207 3990 5 633 1719 173 171 0 chr5 6412488 6412840 -146124419 + MTC LTR MaLR 10 421 0 5 633 3844 195 12 15 chr5 6412842 6413696 -146123563 - L1_Mur3 LINE L1 -1885 3995 3145 5 633 24 32 0 0 chr5 6413791 6413822 -146123437 + AT_rich Low_complexity Low_complexity 1 31 0 5 633 7941 106 27 30 chr5 6413824 6415704 -146121555 - Lx3A LINE L1 -13 6968 5101 5 633 35697 67 3 13 chr5 6415715 6421852 -146115407 - L1Md_F2 LINE L1 0 6585 514 5 79 1811 142 34 18 chr5 6421851 6422620 -146114639 - Lx3A LINE L1 -1079 5930 4835 5 634 1372 102 47 145 chr5 6422624 6422921 -146114338 + L1_Mur1 LINE L1 4694 4961 -925 5 634 678 182 58 7 chr5 6422921 6423076 -146114183 - L1_Mur3 LINE L1 -3718 2162 2000 5 634 1967 130 102 34 chr5 6423083 6423466 -146113793 - RLTR9E LTR ERVK 0 409 1 5 634 1800 143 18 61 chr5 6423478 6423806 -146113453 + ORR1A4 LTR MaLR 1 314 -15 5 634 1607 219 35 10 chr5 6423825 6424222 -146113037 - L1_Mur3 LINE L1 -3904 1976 1570 5 634 1799 201 22 48 chr5 6424222 6424681 -146112578 - L1_Mur3 LINE L1 -6395 1333 887 5 634 1816 264 102 58 chr5 6424674 6425510 -146111749 - RMER1B Other Other -110 956 191 5 634 315 224 15 15 chr5 6425510 6425578 -146111681 - B4 SINE B4 -196 96 29 5 634 425 280 15 23 chr5 6427009 6427201 -146110058 - MMSAT4 Satellite Satellite -19 190 1 5 634 391 264 25 28 chr5 6427247 6427634 -146109625 - MMSAT4 Satellite Satellite -5 385 1 5 634 279 263 34 34 chr5 6427762 6427880 -146109379 - MMSAT4 Satellite Satellite -15 153 36 5 634 406 309 4 4 chr5 6428002 6428217 -146109042 - MMSAT4 Satellite Satellite 0 215 1 5 634 288 300 0 0 chr5 6428906 6429016 -146108243 - MurSatRep1 Unknown Unknown -1409 728 619 5 634 317 281 31 0 chr5 6429571 6429667 -146107592 - MLT1E1 LTR MaLR -3 651 553 5 634 311 239 14 0 chr5 6430830 6430901 -146106358 + L4 LINE RTE 1958 2029 0 5 634 276 379 0 0 chr5 6432340 6432406 -146104853 + Charlie12 DNA MER1_type 7 72 -2801 5 634 612 322 17 6 chr5 6432407 6432588 -146104671 - ORR1E LTR MaLR -175 184 2 5 634 22 35 0 0 chr5 6433078 6433107 -146104152 + AT_rich Low_complexity Low_complexity 1 29 0 5 634 215 250 0 0 chr5 6434878 6434922 -146102337 + (TATG)n Simple_repeat Simple_repeat 3 46 0 5 634 402 115 0 0 chr5 6434952 6435013 -146102246 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 634 495 216 0 0 chr5 6435090 6435197 -146102062 + L1_Mur1 LINE L1 211 417 -6567 5 634 3822 112 19 2 chr5 6435195 6435778 -146101481 + Lx3_Mus LINE L1 6396 6988 -21 5 634 180 0 0 0 chr5 6435778 6435798 -146101461 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 634 253 311 100 24 chr5 6435833 6436163 -146101096 + L1M5 LINE L1 5335 5689 -475 5 634 1923 114 16 35 chr5 6436425 6436743 -146100516 - ORR1A2 LTR MaLR -8 319 8 5 634 240 89 35 35 chr5 6438989 6439047 -146098212 + (TTG)n Simple_repeat Simple_repeat 3 60 0 5 634 542 289 86 45 chr5 6439824 6440291 -146096968 - L1_Mur3 LINE L1 -2246 3634 3149 5 634 6984 95 36 12 chr5 6440281 6440581 -146096678 - L1_Mus4 LINE L1 -5 6631 6334 5 634 3003 71 2 21 chr5 6440581 6441010 -146096249 + BGLII LTR ERVK 1 421 0 5 634 6984 125 29 7 chr5 6441010 6442233 -146095026 - L1_Mus4 LINE L1 -303 6333 5076 5 634 7134 160 12 31 chr5 6442235 6443144 -146094115 + L1_Mur1 LINE L1 3721 4632 -1245 5 634 191 61 30 0 chr5 6443144 6443177 -146094082 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 634 7134 160 12 31 chr5 6443177 6443619 -146093640 + L1_Mur1 LINE L1 4633 5046 -831 5 634 728 216 133 47 chr5 6443724 6444123 -146093136 - RMER6C LTR ERVK 0 720 216 5 634 406 183 168 21 chr5 6444127 6444222 -146093037 - RMER6C LTR ERVK -579 111 3 5 634 425 286 80 38 chr5 6444275 6444562 -146092697 - L1_Mur3 LINE L1 -2818 3062 2764 5 634 969 284 16 90 chr5 6444605 6444915 -146092344 - B4A SINE B4 0 292 6 5 634 340 388 60 12 chr5 6444920 6445087 -146092172 - MLT1D LTR MaLR -135 370 196 5 634 26 30 0 0 chr5 6445908 6445941 -146091318 + AT_rich Low_complexity Low_complexity 1 33 0 5 634 1046 184 101 0 chr5 6445959 6446166 -146091093 + ORR1C2 LTR MaLR 1 228 -156 5 634 373 339 44 4 chr5 6446263 6446295 -146090964 + L1_Mur3 LINE L1 908 946 -6766 5 634 489 34 0 0 chr5 6446295 6446354 -146090905 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 634 373 339 44 4 chr5 6446354 6446546 -146090713 + L1_Mur3 LINE L1 947 1140 -6572 5 634 198 0 0 0 chr5 6446547 6446569 -146090690 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 634 467 60 0 15 chr5 6446643 6446711 -146090548 + (GAAAA)n Simple_repeat Simple_repeat 2 68 0 5 634 887 316 69 25 chr5 6446779 6447227 -146090032 + Lx7 LINE L1 6807 7274 -422 5 634 402 39 0 0 chr5 6447260 6447312 -146089947 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 634 367 254 27 37 chr5 6447509 6447697 -146089562 - Lx9 LINE L1 -1 7643 7458 5 634 335 333 121 64 chr5 6448509 6448996 -146088263 + L1M5 LINE L1 5264 5778 -395 5 634 999 198 81 69 chr5 6449540 6449860 -146087399 - Lx7 LINE L1 0 7696 7373 5 634 28 29 0 0 chr5 6449869 6449904 -146087355 + AT_rich Low_complexity Low_complexity 1 35 0 5 634 450 272 0 0 chr5 6449906 6450079 -146087180 + GA-rich Low_complexity Low_complexity 2 174 0 5 634 620 269 210 7 chr5 6450093 6450388 -146086871 - Lx7 LINE L1 -352 7344 6990 5 634 350 189 22 0 chr5 6450408 6450498 -146086761 - Lx4A LINE L1 -3 7055 6964 5 634 3308 170 48 27 chr5 6450539 6451168 -146086091 + RLTR26 LTR ERVK 1 642 0 5 634 1788 167 3 6 chr5 6451170 6451484 -146085775 - Lx4A LINE L1 -100 6958 6646 5 634 5723 129 49 24 chr5 6451482 6452640 -146084619 + Lx4A LINE L1 5447 6630 -428 5 634 1238 169 56 0 chr5 6452705 6452989 -146084270 + L1_Mur3 LINE L1 3956 4255 -1625 5 634 308 64 21 0 chr5 6453193 6453240 -146084019 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 5 634 1514 196 9 34 chr5 6453243 6453565 -146083694 - Lx5 LINE L1 -59 6991 6678 5 634 298 244 20 109 chr5 6453568 6453669 -146083590 + MT2B LTR ERVL 166 257 -344 5 634 760 167 16 0 chr5 6453580 6453706 -146083553 + B1_Mus1 SINE Alu 13 140 -8 5 634 638 297 67 15 chr5 6454062 6454257 -146083002 - B3 SINE B2 -6 210 6 5 634 374 326 20 20 chr5 6455294 6455441 -146081818 - B1F SINE Alu -1 148 2 5 634 2184 89 31 19 chr5 6456379 6456700 -146080559 - IAPLTR2b LTR ERVK -2 325 1 5 634 819 322 53 23 chr5 6457640 6458203 -146079056 - L1MC3 LINE L1 -227 7949 7370 5 634 543 293 118 104 chr5 6458216 6458666 -146078593 - L1MC3 LINE L1 -2140 6293 5838 5 634 472 337 11 0 chr5 6458924 6459114 -146078145 - B3A SINE B2 -2 196 5 5 634 488 329 76 6 chr5 6459127 6459298 -146077961 + Tigger5 DNA MER2_type 36 218 -2188 5 634 24 0 0 0 chr5 6459350 6459374 -146077885 + AT_rich Low_complexity Low_complexity 1 24 0 5 634 648 311 78 19 chr5 6459434 6459999 -146077260 - L1MC3 LINE L1 -1469 5068 4471 5 634 1347 293 98 24 chr5 6460105 6460678 -146076581 - Lx6 LINE L1 -4 7456 6842 5 634 462 146 0 0 chr5 6461010 6461092 -146076167 + (TA)n Simple_repeat Simple_repeat 1 82 0 5 634 22 0 0 0 chr5 6461101 6461123 -146076136 + AT_rich Low_complexity Low_complexity 1 22 0 5 634 504 257 127 29 chr5 6461242 6461486 -146075773 - Lx9 LINE L1 -1616 6028 5761 5 634 1257 297 93 23 chr5 6461494 6462148 -146075111 + Lx9 LINE L1 6929 7628 -16 5 634 505 329 68 67 chr5 6462332 6462918 -146074341 - L1MC3 LINE L1 -5299 1334 748 5 634 2478 144 15 22 chr5 6462945 6463351 -146073908 - RLTR9D LTR ERVK 0 403 1 5 634 389 123 40 27 chr5 6463351 6463426 -146073833 - ETnERV2-int LTR ERVK 0 7406 7331 5 634 3469 162 3 18 chr5 6463638 6464434 -146072825 - ETnERV2-int LTR ERVK -1179 6227 5686 5 634 2112 200 51 34 chr5 6464448 6465013 -146072246 - RMER16-int LTR ERVK -1983 3423 2849 5 634 3260 149 63 5 chr5 6465015 6465683 -146071576 - ETnERV2-int LTR ERVK -3643 3763 3057 5 634 36618 57 12 3 chr5 6465683 6472096 -146065163 - L1Md_T LINE L1 0 6582 155 5 634 3193 116 53 9 chr5 6472097 6472647 -146064612 - ETnERV2-int LTR ERVK -4337 3069 2496 5 634 5354 103 82 15 chr5 6472672 6473611 -146063648 - ETnERV2-int LTR ERVK -5321 2085 1083 5 634 402 57 0 0 chr5 6473611 6473664 -146063595 + (TTTTA)n Simple_repeat Simple_repeat 4 56 0 5 634 5354 227 69 53 chr5 6473664 6474043 -146063216 - ETnERV2-int LTR ERVK -6324 1082 1060 5 634 276 186 0 0 chr5 6474051 6474094 -146063165 - RLTR9B2 LTR ERVK 0 403 361 5 634 763 124 0 9 chr5 6474093 6474207 -146063052 - RLTR9B2 LTR ERVK -307 113 1 5 634 373 267 143 15 chr5 6474275 6474408 -146062851 - MTC LTR MaLR 0 421 272 5 634 3627 185 34 6 chr5 6474408 6475108 -146062151 + Lx4A LINE L1 6339 7058 0 5 634 1000 109 0 26 chr5 6475116 6475267 -146061992 + B1_Mus1 SINE Alu 2 148 0 5 634 207 0 0 0 chr5 6475267 6475290 -146061969 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 5 634 2397 213 25 6 chr5 6475292 6475816 -146061443 - MERVL_2A-int LTR ERVL -4096 1665 1132 5 634 4471 202 35 9 chr5 6475822 6476808 -146060451 - MERVL_2A-int LTR ERVL -4735 1026 16 5 634 640 263 110 107 chr5 6476809 6477145 -146060114 - MT2A LTR ERVL -196 337 1 5 634 396 0 0 0 chr5 6477220 6477264 -146059995 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 634 237 128 0 0 chr5 6478359 6478406 -146058853 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 5 634 510 61 0 0 chr5 6478407 6478473 -146058786 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 634 629 320 34 48 chr5 6478528 6478820 -146058439 - B4A SINE B4 -3 289 2 5 634 24 0 0 0 chr5 6479833 6479857 -146057402 + AT_rich Low_complexity Low_complexity 1 24 0 5 634 654 13 0 0 chr5 6480350 6480425 -146056834 + (TTC)n Simple_repeat Simple_repeat 2 76 0 5 634 234 0 0 0 chr5 6481627 6481653 -146055606 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 634 289 326 0 33 chr5 6482685 6482777 -146054482 + PB1D10 SINE Alu 3 91 -26 5 634 1105 52 0 0 chr5 6482939 6483074 -146054185 + B1_Mm SINE Alu 1 135 -12 5 634 516 286 159 80 chr5 6483087 6483414 -146053845 + RMER4B LTR ERVK 36 388 -197 5 634 2342 115 210 27 chr5 6483540 6484021 -146053238 + RLTR6_Mm LTR ERV1 37 605 -49 5 634 64226 15 13 1 chr5 6484021 6491710 -146045549 + RLTR6-int LTR ERV1 1 7778 0 5 634 2237 112 220 26 chr5 6491819 6492278 -146044981 + RLTR6_Mm LTR ERV1 37 584 -70 5 634 227 356 122 23 chr5 6493475 6493696 -146043563 + Charlie7 DNA MER1_type 54 296 -2316 5 634 4440 136 29 16 chr5 6493769 6495258 -146042001 + L1VL4 LINE L1 151 1678 -1937 6 634 1286 268 85 26 chr5 6495545 6496042 -146041217 - MuRRS4-int LTR ERV1 -1038 4025 3533 6 634 562 269 35 16 chr5 6496372 6496616 -146040643 - MuRRS4-int LTR ERV1 -1946 3117 2930 6 634 807 336 73 78 chr5 6496714 6497093 -146040166 - RLTR6-int LTR ERV1 -4675 3103 2720 6 634 369 0 0 0 chr5 6497093 6497134 -146040125 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 634 807 337 68 77 chr5 6497134 6498774 -146038485 - RLTR6-int LTR ERV1 -5059 2719 1008 6 634 396 305 32 30 chr5 6498932 6499249 -146038010 - RLTR6-int LTR ERV1 -6796 810 526 6 634 438 20 0 0 chr5 6499619 6499670 -146037589 + (CAGAC)n Simple_repeat Simple_repeat 4 54 0 6 634 372 180 66 57 chr5 6499824 6499930 -146037329 - RLTR47_MM LTR ERV1 0 532 426 6 634 22 35 0 0 chr5 6500011 6500040 -146037219 + AT_rich Low_complexity Low_complexity 1 29 0 1 634 244 232 0 0 chr5 6500164 6500220 -146037039 + L1MD LINE L1 4283 4338 -1808 2 634 22 0 0 0 chr5 6500235 6500257 -146037002 + AT_rich Low_complexity Low_complexity 1 22 0 3 634 870 62 0 0 chr5 6500325 6500438 -146036821 + (TG)n Simple_repeat Simple_repeat 2 114 0 4 634 21 0 0 0 chr5 6500981 6501002 -146036257 + AT_rich Low_complexity Low_complexity 1 21 0 5 634 22 35 0 0 chr5 6501355 6501384 -146035875 + AT_rich Low_complexity Low_complexity 1 29 0 6 634 252 359 43 11 chr5 6501739 6501832 -146035427 - MLT1J1 LTR MaLR -283 161 66 7 634 404 339 24 122 chr5 6502464 6502793 -146034466 + L2c LINE L2 3055 3351 -36 8 634 553 347 41 26 chr5 6502923 6503118 -146034141 + B3A SINE B2 1 198 0 9 634 225 237 0 0 chr5 6504085 6504144 -146033115 + CT-rich Low_complexity Low_complexity 6 64 0 1 634 2126 204 48 62 chr5 6504493 6505010 -146032249 - RLTR24 LTR ERV1 -19 510 1 1 634 201 74 0 0 chr5 6505312 6505339 -146031920 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1 634 1150 75 0 0 chr5 6505341 6505488 -146031771 - B1_Mm SINE Alu 0 147 1 1 634 551 136 0 9 chr5 6506316 6506427 -146030832 + (TC)n Simple_repeat Simple_repeat 2 111 0 1 634 815 264 36 14 chr5 6507102 6507325 -146029934 + RLTR42-int LTR ERVK 1160 1387 -4135 1 634 569 285 64 64 chr5 6507482 6507827 -146029432 - RLTR15 LTR ERVK -8 351 7 1 634 21 0 0 0 chr5 6508167 6508188 -146029071 + AT_rich Low_complexity Low_complexity 1 21 0 1 634 435 83 0 0 chr5 6508238 6508298 -146028961 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 634 1017 150 60 64 chr5 6508328 6508643 -146028616 + ORR1A4-int LTR MaLR 1756 1962 -1 1 634 1238 168 51 72 chr5 6508644 6508920 -146028339 + ORR1A4 LTR MaLR 1 270 -59 1 634 2582 180 68 14 chr5 6508920 6509422 -146027837 + Lx4A LINE L1 6530 7058 0 2 634 312 188 0 0 chr5 6509431 6509495 -146027764 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 634 351 0 0 0 chr5 6509497 6509536 -146027723 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 634 25 0 0 0 chr5 6509639 6509664 -146027595 + AT_rich Low_complexity Low_complexity 1 25 0 2 634 23 0 0 0 chr5 6509818 6509841 -146027418 + AT_rich Low_complexity Low_complexity 1 23 0 2 634 241 354 95 0 chr5 6509923 6510081 -146027178 + RMER15 LTR ERVL 380 552 -23 2 634 32654 87 4 5 chr5 6510168 6515331 -146021928 + L1Md_F2 LINE L1 446 5586 -297 2 634 7560 70 3 5 chr5 6515331 6516325 -146020934 + L1Md_F2 LINE L1 5587 6578 -4 2 634 3167 54 10 0 chr5 6516567 6516959 -146020300 - MTA_Mm LTR MaLR 0 396 1 2 634 2234 179 40 25 chr5 6517035 6517510 -146019749 - RLTR11A2 LTR ERVK -45 482 1 2 634 574 182 9 9 chr5 6518297 6518408 -146018851 + RLTR42-int LTR ERVK 2871 2981 -2541 2 634 672 241 101 9 chr5 6518464 6518682 -146018577 + RLTR42-int LTR ERVK 4002 4239 -1283 2 634 350 220 275 0 chr5 6518935 6519026 -146018233 + MER5A1 DNA MER1_type 51 166 0 3 634 249 119 0 0 chr5 6519965 6520007 -146017252 + (TCC)n Simple_repeat Simple_repeat 3 44 0 3 634 25 99 0 0 chr5 6520316 6520397 -146016862 + AT_rich Low_complexity Low_complexity 1 81 0 3 634 30 45 0 0 chr5 6521516 6521560 -146015699 + AT_rich Low_complexity Low_complexity 1 44 0 3 634 222 37 0 0 chr5 6521667 6521694 -146015565 + (T)n Simple_repeat Simple_repeat 1 27 0 3 634 8562 129 81 16 chr5 6521835 6524231 -146013028 - L1_Mus4 LINE L1 0 6636 4051 3 634 6698 136 8 3 chr5 6524232 6525350 -146011909 + L1_Mus4 LINE L1 2928 4051 -1832 3 634 1461 68 16 0 chr5 6525392 6525584 -146011675 - B2_Mm2 SINE B2 0 195 1 3 634 256 299 61 20 chr5 6525921 6526020 -146011239 - L1MD3 LINE L1 -276 7719 7617 3 634 1086 108 6 12 chr5 6527753 6527921 -146009338 + Lx3B LINE L1 3545 3711 -2175 3 634 8539 111 13 14 chr5 6527920 6529950 -146007309 + Lx3B LINE L1 4533 6565 -408 3 634 261 167 61 0 chr5 6530472 6530538 -146006721 - MER33 DNA MER1_type -115 209 140 3 634 373 171 35 58 chr5 6530543 6530630 -146006629 + MTD LTR MaLR 3 87 -334 4 634 226 191 21 53 chr5 6530706 6530800 -146006459 + (TTTA)n Simple_repeat Simple_repeat 1 91 0 4 634 43 20 0 0 chr5 6530810 6530860 -146006399 + AT_rich Low_complexity Low_complexity 1 50 0 4 634 381 43 0 0 chr5 6530890 6530937 -146006322 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 634 476 253 179 25 chr5 6530937 6531172 -146006087 + MTD LTR MaLR 149 419 0 4 634 540 0 0 0 chr5 6531578 6531638 -146005621 + (TC)n Simple_repeat Simple_repeat 1 60 0 4 634 216 0 0 0 chr5 6531729 6531753 -146005506 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 634 188 204 0 36 chr5 6531803 6531859 -146005400 + (CGTG)n Simple_repeat Simple_repeat 1 54 0 4 634 3778 181 86 66 chr5 6531883 6532766 -146004493 + RMER19B LTR ERVK 2 902 0 4 634 929 309 29 50 chr5 6532787 6533203 -146004056 - Lx9 LINE L1 -273 7371 6965 4 634 428 320 38 57 chr5 6533201 6533413 -146003846 - Lx9 LINE L1 -812 6832 6625 4 634 346 224 24 0 chr5 6533458 6533543 -146003716 + Lx7 LINE L1 7610 7696 0 4 634 258 217 0 0 chr5 6534333 6534402 -146002857 + (TA)n Simple_repeat Simple_repeat 2 70 0 5 634 3700 195 63 66 chr5 6535560 6536489 -146000770 + Lx4B LINE L1 6130 7056 -2 5 634 958 248 36 0 chr5 6536500 6536722 -146000537 + ORR1D1 LTR MaLR 68 297 -77 5 634 921 302 28 42 chr5 6536959 6537246 -146000013 + B4 SINE B4 10 292 0 5 634 236 321 0 0 chr5 6537276 6537332 -145999927 + B1F1 SINE Alu 1 56 -93 5 634 204 67 0 0 chr5 6537345 6537375 -145999884 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 5 634 381 363 70 59 chr5 6537404 6537691 -145999568 - B4 SINE B4 -1 291 2 5 634 222 143 24 0 chr5 6537826 6537868 -145999391 + T-rich Low_complexity Low_complexity 3 45 0 5 634 579 96 0 0 chr5 6537868 6537951 -145999308 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 634 206 77 0 0 chr5 6537951 6537977 -145999282 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 5 634 1293 53 0 0 chr5 6537984 6538153 -145999106 + L1Md_A LINE L1 6413 6581 -1 6 634 259 404 57 6 chr5 6539507 6539664 -145997595 - LTR16E2 LTR ERVL -32 536 372 6 634 426 104 0 0 chr5 6540396 6540463 -145996796 - BGLII_Mus LTR ERVK 0 422 356 6 634 485 68 0 14 chr5 6540483 6540557 -145996702 + Lx3A LINE L1 6133 6205 -776 6 634 6604 83 11 5 chr5 6540523 6541684 -145995575 - Lx3A LINE L1 -795 6186 5011 6 634 32 43 0 0 chr5 6542019 6542065 -145995194 + AT_rich Low_complexity Low_complexity 1 46 0 6 634 240 86 0 0 chr5 6542066 6542101 -145995158 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 634 524 278 30 8 chr5 6542124 6542258 -145995001 - B3A SINE B2 -58 140 4 6 634 3571 197 17 17 chr5 6542498 6543206 -145994053 - RMER6D LTR ERVK -12 708 1 6 634 351 355 79 56 chr5 6543277 6543709 -145993550 + L2 LINE L2 2172 2613 -806 6 634 216 290 37 102 chr5 6544305 6544420 -145992839 - B4 SINE B4 -50 115 8 7 634 21 0 0 0 chr5 6544533 6544554 -145992705 + AT_rich Low_complexity Low_complexity 1 21 0 7 634 24 0 0 0 chr5 6544738 6544762 -145992497 + AT_rich Low_complexity Low_complexity 1 24 0 7 634 289 228 0 0 chr5 6545477 6545534 -145991725 + ID4 SINE ID 14 70 -13 7 634 408 20 0 0 chr5 6546452 6546501 -145990758 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 634 2090 129 15 9 chr5 6546896 6547239 -145990020 + Lx3A LINE L1 6623 6967 -14 7 634 288 53 0 0 chr5 6547239 6547277 -145989982 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 7 634 28 29 0 0 chr5 6547279 6547314 -145989945 + AT_rich Low_complexity Low_complexity 1 35 0 7 634 1106 55 14 0 chr5 6547407 6547552 -145989707 + B1_Mm SINE Alu 1 147 0 7 634 243 229 0 0 chr5 6547862 6547923 -145989336 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 7 634 367 369 40 20 chr5 6548025 6548254 -145989005 - MIR SINE MIR -16 246 16 8 634 344 397 29 6 chr5 6549413 6549588 -145987671 + MIR SINE MIR 41 219 -43 8 634 3276 65 10 0 chr5 6549588 6550003 -145987256 - L1Md_F2 LINE L1 -571 6011 5593 8 634 3157 82 8 68 chr5 6550003 6550490 -145986769 + L1Md_F2 LINE L1 6120 6577 -5 8 634 207 0 0 0 chr5 6550524 6550547 -145986712 + (A)n Simple_repeat Simple_repeat 1 23 0 8 634 337 228 59 0 chr5 6550711 6550812 -145986447 + Lx4A LINE L1 6951 7057 -1 8 634 238 387 18 77 chr5 6551905 6552126 -145985133 + B3 SINE B2 4 211 -5 8 634 186 143 0 0 chr5 6552385 6552420 -145984839 + (A)n Simple_repeat Simple_repeat 1 35 0 8 634 1545 176 29 41 chr5 6552479 6552793 -145984466 - Lx2B LINE L1 -4 6996 6687 8 634 2611 158 8 27 chr5 6552796 6552918 -145984341 + Lx2 LINE L1 5420 5535 -351 8 634 3297 43 2 5 chr5 6552918 6553315 -145983944 - MTA_Mm LTR MaLR 0 396 1 8 79 7348 83 21 70 chr5 6553316 6554470 -145982789 - MTA_Mm-int LTR MaLR -1 1097 1 8 635 3082 43 5 18 chr5 6554470 6554871 -145982388 - MTA_Mm LTR MaLR 0 396 1 8 635 6636 152 12 14 chr5 6554871 6556053 -145981206 + Lx2 LINE L1 5536 6710 -287 8 635 405 0 0 0 chr5 6556194 6556239 -145981020 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 635 22 0 0 0 chr5 6556464 6556486 -145980773 + AT_rich Low_complexity Low_complexity 1 22 0 9 635 40256 16 1 7 chr5 6556597 6562133 -145975126 + L1Md_A LINE L1 440 5937 -645 9 635 2147 121 15 6 chr5 6562134 6562468 -145974791 + IAPLTR1a_Mm LTR ERVK 1 337 0 9 635 21547 75 43 19 chr5 6562468 6565465 -145971794 + IAPEz-int LTR ERVK 8 3076 -3405 9 635 6485 61 12 18 chr5 6565451 6566306 -145970953 + IAPEz-int LTR ERVK 5630 6479 -2 9 635 2147 121 15 6 chr5 6566308 6566642 -145970617 + IAPLTR1a_Mm LTR ERVK 1 337 0 9 635 5193 56 3 0 chr5 6566642 6567289 -145969970 + L1Md_T LINE L1 5933 6581 -1 9 635 310 276 67 103 chr5 6567353 6567547 -145969712 + L1MEg LINE L1 903 1089 -5153 9 635 360 88 0 0 chr5 6567596 6567653 -145969606 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 635 200 178 43 36 chr5 6567667 6567807 -145969452 + (TATAA)n Simple_repeat Simple_repeat 3 143 0 9 635 265 214 11 33 chr5 6567843 6567935 -145969324 - Lx6 LINE L1 -30 7430 7341 9 635 3808 165 42 23 chr5 6567935 6568672 -145968587 - RMER6A LTR ERVK 0 756 6 9 635 411 351 65 0 chr5 6568702 6568856 -145968403 - Lx6 LINE L1 -145 7315 7152 9 635 507 33 0 0 chr5 6568918 6568979 -145968280 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 635 261 0 0 0 chr5 6568979 6569007 -145968252 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 635 606 199 40 54 chr5 6569011 6569160 -145968099 - ORR1C1 LTR MaLR -231 147 1 1 635 26 82 0 0 chr5 6569421 6569482 -145967777 + AT_rich Low_complexity Low_complexity 1 61 0 1 635 531 294 206 12 chr5 6569677 6570249 -145967010 + L1MEg LINE L1 2482 3164 -2982 9 635 22 0 0 0 chr5 6570562 6570584 -145966675 + AT_rich Low_complexity Low_complexity 1 22 0 1 635 1919 90 4 0 chr5 6570809 6571077 -145966182 + L1_Mm LINE L1 4809 5077 -806 1 635 230 0 0 0 chr5 6571072 6571098 -145966161 - L1_Mm LINE L1 -411 5472 5447 1 635 207 0 0 0 chr5 6571098 6571121 -145966138 + (T)n Simple_repeat Simple_repeat 1 23 0 1 635 1253 27 0 0 chr5 6571121 6571268 -145965991 - B1_Mus2 SINE Alu 0 147 1 1 635 893 19 0 0 chr5 6571269 6571374 -145965885 - L1_Mm LINE L1 -424 5459 5355 1 635 389 181 315 23 chr5 6571375 6571505 -145965754 - URR1B DNA MER1_type -57 168 1 1 635 8083 87 12 4 chr5 6571566 6572742 -145964517 - L1_Mur1 LINE L1 -551 5335 4151 1 635 4838 125 17 3 chr5 6572742 6573488 -145963771 + Lx3A LINE L1 6222 6978 -3 1 635 24 0 0 0 chr5 6573501 6573525 -145963734 + AT_rich Low_complexity Low_complexity 1 24 0 1 635 373 176 31 115 chr5 6573879 6573975 -145963284 - RLTR33 LTR ERVK -130 548 461 1 635 1674 166 23 70 chr5 6573975 6574264 -145962995 + ORR1A2 LTR MaLR 1 275 -52 1 635 1857 151 12 18 chr5 6574264 6574602 -145962657 - Lx2 LINE L1 -1 6996 6661 1 635 1674 166 23 70 chr5 6574602 6574655 -145962604 + ORR1A2 LTR MaLR 276 327 0 1 635 548 169 62 10 chr5 6574655 6574846 -145962413 - RLTR33 LTR ERVK -213 465 182 1 635 217 242 44 29 chr5 6575151 6575219 -145962040 - L4 LINE RTE -1539 490 422 1 635 1076 75 155 0 chr5 6575340 6575501 -145961758 - B2_Mm2 SINE B2 -9 186 1 1 635 414 0 0 0 chr5 6575512 6575558 -145961701 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 635 533 271 93 79 chr5 6575621 6575837 -145961422 + MER67D LTR ERV1 37 255 -259 1 635 416 138 255 0 chr5 6575838 6575932 -145961327 - MTC LTR MaLR -297 124 7 1 635 455 245 81 109 chr5 6576572 6576746 -145960513 + B3A SINE B2 14 182 -16 1 635 420 20 0 0 chr5 6578204 6578253 -145959006 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 635 730 343 45 50 chr5 6578277 6578655 -145958604 - MER74A LTR ERVL -61 497 122 1 635 311 346 21 11 chr5 6578935 6579122 -145958137 - MER5A DNA MER1_type 0 189 1 1 635 234 0 0 0 chr5 6579377 6579403 -145957856 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1 635 27 0 0 0 chr5 6579871 6579898 -145957361 + AT_rich Low_complexity Low_complexity 1 27 0 1 635 191 332 53 16 chr5 6580451 6580600 -145956659 + MIR SINE MIR 49 210 -58 1 635 247 339 33 74 chr5 6581657 6581778 -145955481 + B3 SINE B2 2 117 -99 1 635 1419 222 43 40 chr5 6582261 6582632 -145954627 + ORR1D1 LTR MaLR 3 374 0 1 635 1582 224 16 16 chr5 6582680 6583048 -145954211 - ORR1D2 LTR MaLR 0 370 3 1 635 213 65 0 0 chr5 6584893 6584924 -145952335 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1 635 22 35 0 0 chr5 6586317 6586346 -145950913 + AT_rich Low_complexity Low_complexity 1 29 0 1 635 515 319 54 10 chr5 6586820 6587023 -145950236 + B3 SINE B2 5 216 0 1 635 457 290 21 14 chr5 6589626 6589766 -145947493 + RSINE1 SINE B4 12 152 -13 1 635 363 155 0 0 chr5 6589836 6589920 -145947339 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 635 3224 26 2 20 chr5 6590851 6591248 -145946011 - RLTR10 LTR ERVK 0 390 1 1 635 11299 102 46 37 chr5 6591248 6593178 -145944081 - RLTR10-int LTR ERVK 0 1987 41 1 635 3224 26 2 20 chr5 6593188 6593585 -145943674 - RLTR10 LTR ERVK 0 390 1 1 635 637 314 73 16 chr5 6594762 6595199 -145942060 - L1M2 LINE L1 -873 5270 4809 1 635 602 305 49 7 chr5 6595214 6595356 -145941903 + RSINE1 SINE B4 3 150 -15 1 635 747 277 76 35 chr5 6595445 6595958 -145941301 - L1_Mur3 LINE L1 -1106 4774 4241 1 635 433 298 53 91 chr5 6596083 6596189 -145941070 + Lx2A LINE L1 5392 5490 -810 1 635 369 0 0 0 chr5 6596189 6596230 -145941029 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 635 433 283 61 100 chr5 6596230 6596560 -145940699 + Lx2A LINE L1 5491 5803 -497 1 635 286 314 0 34 chr5 6596598 6596687 -145940572 + Lx8 LINE L1 6549 6634 -839 1 635 1149 328 70 30 chr5 6596780 6597312 -145939947 + Lx8 LINE L1 6667 7219 -254 1 635 282 290 83 42 chr5 6597362 6597603 -145939656 - Lx8 LINE L1 -1632 6012 5761 1 635 353 149 0 29 chr5 6597624 6597693 -145939566 - ORR1A4 LTR MaLR -261 68 2 1 635 240 59 0 0 chr5 6597817 6597851 -145939408 + (T)n Simple_repeat Simple_repeat 1 34 0 1 635 198 0 0 0 chr5 6598504 6598526 -145938733 + (T)n Simple_repeat Simple_repeat 1 22 0 1 635 1055 171 119 24 chr5 6598960 6599211 -145938048 - ORR1A4 LTR MaLR -52 277 3 1 635 213 94 0 0 chr5 6599232 6599264 -145937995 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1 635 22 0 0 0 chr5 6599279 6599301 -145937958 + AT_rich Low_complexity Low_complexity 1 22 0 1 635 805 149 0 19 chr5 6599306 6599463 -145937796 - Lx3A LINE L1 -3 6978 6825 1 635 284 217 14 0 chr5 6599660 6599729 -145937530 + GA-rich Low_complexity Low_complexity 3 72 0 1 635 1900 289 62 23 chr5 6600127 6600299 -145936960 - RCHARR1 DNA MER1_type -271 703 522 1 635 258 32 0 0 chr5 6600299 6600330 -145936929 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 635 1900 289 62 23 chr5 6600330 6600822 -145936437 - RCHARR1 DNA MER1_type -453 521 14 1 635 204 247 0 27 chr5 6602054 6602129 -145935130 + (CAGAGA)n Simple_repeat Simple_repeat 4 76 0 1 635 195 42 0 0 chr5 6602202 6602226 -145935033 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 1 635 8479 100 6 30 chr5 6602622 6604740 -145932519 + L1VL1 LINE L1 408 2475 -3408 1 635 2686 73 14 0 chr5 6604740 6605096 -145932163 + L1_Mus1 LINE L1 6204 6564 -3 1 635 21 0 0 0 chr5 6605562 6605583 -145931676 + AT_rich Low_complexity Low_complexity 1 21 0 1 635 415 318 60 20 chr5 6605634 6605785 -145931474 - MT2A LTR ERVL -114 419 263 1 635 272 260 82 52 chr5 6606022 6606156 -145931103 - MERVL_2A-int LTR ERVL -1400 4361 4224 1 635 7534 155 11 8 chr5 6606463 6608524 -145928735 - Lx LINE L1 -1 6653 4595 1 635 344 83 0 0 chr5 6608525 6608573 -145928686 + L1_Mm LINE L1 4524 4571 -1312 1 635 728 157 7 0 chr5 6608768 6608915 -145928344 + (TA)n Simple_repeat Simple_repeat 2 149 0 1 635 243 203 0 0 chr5 6608914 6608973 -145928286 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 635 200 193 23 0 chr5 6609207 6609295 -145927964 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 1 635 184 57 71 54 chr5 6609460 6609516 -145927743 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 1 635 596 262 21 0 chr5 6610095 6610240 -145927019 - B1_Mus1 SINE Alu 0 148 1 1 635 653 96 206 0 chr5 6610292 6610492 -145926767 + L1_Mus2 LINE L1 6435 6582 0 1 635 233 232 163 47 chr5 6610627 6610713 -145926546 + Lx8 LINE L1 7033 7128 -345 1 635 3733 104 19 8 chr5 6610713 6611284 -145925975 - RLTR13D1 LTR ERVK 0 929 227 1 635 3119 130 38 15 chr5 6611257 6611788 -145925471 - RLTR13D1 LTR ERVK -359 543 1 1 635 572 351 40 37 chr5 6611788 6612137 -145925122 + Lx8 LINE L1 7123 7472 -1 1 635 446 273 0 66 chr5 6612157 6612217 -145925042 - B1F2 SINE Alu -5 144 91 1 635 1437 139 39 67 chr5 6612217 6612548 -145924711 - RLTRETN_Mm LTR ERVK 0 322 1 1 635 446 281 42 61 chr5 6612548 6612620 -145924639 - B1F2 SINE Alu -59 90 4 1 635 226 303 26 0 chr5 6612656 6612732 -145924527 + L1MDa LINE L1 18 95 -6538 1 635 1869 166 51 6 chr5 6612965 6613298 -145923961 + MTC LTR MaLR 1 348 -73 1 635 659 192 185 0 chr5 6613295 6613441 -145923818 + MTC LTR MaLR 248 420 -1 1 635 1616 100 4 0 chr5 6613818 6614049 -145923210 + L1_Mus2 LINE L1 6334 6565 -1 1 635 207 306 97 0 chr5 6614286 6614348 -145922911 + MIRm SINE MIR 209 276 0 1 635 1063 259 21 14 chr5 6614984 6615266 -145921993 - MTD LTR MaLR -135 284 1 1 635 32292 85 2 11 chr5 6615299 6619922 -145917337 + L1Md_F2 LINE L1 283 4815 -1068 1 635 2900 12 0 43 chr5 6619922 6620274 -145916985 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 635 32292 75 1 9 chr5 6620274 6621046 -145916213 + L1Md_F2 LINE L1 4816 5585 -298 1 635 8135 43 2 0 chr5 6621047 6622041 -145915218 + L1Md_F2 LINE L1 5587 6582 0 1 635 956 100 36 0 chr5 6622343 6622483 -145914776 + B1_Mus1 SINE Alu 2 146 -2 1 635 300 27 0 0 chr5 6622493 6622530 -145914729 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1 635 454 301 72 0 chr5 6622594 6622760 -145914499 + B3A SINE B2 3 180 -18 1 635 1580 138 12 81 chr5 6623103 6623449 -145913810 + RLTRETN_Mm LTR ERVK 1 322 0 1 635 386 333 43 52 chr5 6623738 6624064 -145913195 - L1M5 LINE L1 -750 5396 5074 1 635 202 293 12 0 chr5 6624086 6624168 -145913091 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 635 738 199 10 61 chr5 6625284 6625482 -145911777 - B2_Mm2 SINE B2 -7 188 1 1 635 21 57 0 0 chr5 6625505 6625540 -145911719 + AT_rich Low_complexity Low_complexity 1 35 0 1 635 1090 229 53 3 chr5 6625666 6625972 -145911287 - Lx7 LINE L1 -1762 5934 5654 1 635 1588 37 0 0 chr5 6626081 6626268 -145910991 - B2_Mm1t SINE B2 -6 187 1 1 635 21 57 0 0 chr5 6627291 6627326 -145909933 + AT_rich Low_complexity Low_complexity 1 35 0 1 635 1088 198 11 84 chr5 6627791 6628077 -145909182 + L1VL2 LINE L1 443 707 -5628 1 635 5324 161 64 53 chr5 6628074 6628152 -145909107 + Lx2B LINE L1 2794 2871 -3015 1 635 774 60 0 0 chr5 6628152 6628252 -145909007 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 1 635 5324 161 64 53 chr5 6628252 6628889 -145908370 + Lx2B LINE L1 2872 3525 -2361 1 635 1664 16 5 0 chr5 6628889 6629080 -145908179 - B2_Mm1a SINE B2 0 193 2 1 635 5324 161 64 53 chr5 6629080 6629594 -145907665 + Lx2B LINE L1 3526 4037 -1849 1 635 8322 26 10 0 chr5 6629624 6630978 -145906281 - L1Md_T LINE L1 0 6582 5221 1 635 2827 218 14 11 chr5 6630978 6631539 -145905720 + RLTR17 LTR ERVK 108 670 -22 1 635 4990 153 9 13 chr5 6631604 6632513 -145904746 + Lx2B LINE L1 4024 4928 -949 1 635 5373 105 43 24 chr5 6632535 6633396 -145903863 - L1_Mus4 LINE L1 -5 6631 5755 1 635 3209 177 51 28 chr5 6633396 6634578 -145902681 + L1Md_F2 LINE L1 5370 6582 0 1 635 7544 187 23 8 chr5 6634574 6635107 -145902152 + Lx2B LINE L1 5329 5860 -26 1 635 207 0 0 0 chr5 6635107 6635130 -145902129 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 635 7544 172 37 9 chr5 6635130 6636229 -145901030 + Lx2B LINE L1 5858 6995 -5 1 635 339 85 0 0 chr5 6636232 6636279 -145900980 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 635 1111 263 53 19 chr5 6636281 6636657 -145900602 + Lx4B LINE L1 6393 6816 -234 2 635 899 126 0 6 chr5 6636657 6636817 -145900442 + (TCTA)n Simple_repeat Simple_repeat 2 160 0 2 635 1020 312 130 15 chr5 6636817 6636835 -145900424 + Lx4B LINE L1 6817 6833 -217 2 635 471 78 0 0 chr5 6636835 6636899 -145900360 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 635 1020 259 92 18 chr5 6636899 6637070 -145900189 + Lx4B LINE L1 6834 7042 -16 2 635 423 132 0 0 chr5 6637439 6637507 -145899752 + (TAA)n Simple_repeat Simple_repeat 2 69 0 2 635 343 185 86 0 chr5 6638229 6638310 -145898949 - HAL1-3A_ME LINE L1 -793 2065 1978 2 635 232 65 65 0 chr5 6638313 6638359 -145898900 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 2 635 762 310 132 30 chr5 6638397 6638760 -145898499 - Lx8 LINE L1 -640 6833 6434 2 635 725 92 244 5 chr5 6638895 6639092 -145898167 - L1_Mus2 LINE L1 -1 6565 6322 2 635 24 32 0 0 chr5 6639402 6639433 -145897826 + AT_rich Low_complexity Low_complexity 1 31 0 2 635 22 70 0 0 chr5 6639675 6639718 -145897541 + AT_rich Low_complexity Low_complexity 1 43 0 2 635 365 400 14 22 chr5 6639731 6639869 -145897390 - RSINE1 SINE B4 -26 139 3 2 635 235 246 112 70 chr5 6639873 6640087 -145897172 - L1MD LINE L1 -2982 3164 2942 2 635 25 51 0 0 chr5 6642312 6642351 -145894908 + AT_rich Low_complexity Low_complexity 1 39 0 2 635 252 0 0 0 chr5 6642588 6642616 -145894643 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 635 216 0 0 0 chr5 6643331 6643355 -145893904 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 635 391 325 60 18 chr5 6643801 6643992 -145893267 + B3A SINE B2 1 199 -17 2 635 212 158 0 0 chr5 6643993 6644031 -145893228 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 635 22 35 0 0 chr5 6644652 6644681 -145892578 + AT_rich Low_complexity Low_complexity 1 29 0 2 635 26 30 0 0 chr5 6644751 6644784 -145892475 + AT_rich Low_complexity Low_complexity 1 33 0 2 635 4336 130 46 42 chr5 6645025 6645828 -145891431 - RLTR13D1 LTR ERVK 0 806 1 2 635 4119 49 8 10 chr5 6646022 6646535 -145890724 - LTRIS3 LTR ERV1 0 512 1 2 635 4307 139 51 9 chr5 6646927 6647675 -145889584 + Lx2 LINE L1 6219 6997 0 2 635 631 271 41 78 chr5 6649040 6649284 -145887975 - RLTR25B LTR ERVK 0 1028 794 2 635 2963 172 133 103 chr5 6649384 6650201 -145887058 - RLTR25B LTR ERVK -175 853 12 2 635 944 196 74 32 chr5 6650203 6650419 -145886840 - Lx9 LINE L1 -687 6957 6733 2 635 588 292 41 0 chr5 6650437 6650584 -145886675 - MTEa LTR MaLR -209 170 18 2 635 189 89 67 0 chr5 6650802 6650847 -145886412 + A-rich Low_complexity Low_complexity 2 49 0 2 635 4122 87 12 14 chr5 6650894 6651487 -145885772 - L1_Mus3 LINE L1 0 6638 6047 2 635 6341 125 4 1 chr5 6651487 6652498 -145884761 + L1_Mm LINE L1 3233 4246 -1637 2 635 2401 318 74 49 chr5 6652500 6653636 -145883623 - MTE2b-int LTR MaLR -313 1267 104 2 635 357 24 0 0 chr5 6653792 6653834 -145883425 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 635 287 262 26 1 chr5 6653841 6653926 -145883333 - MTE2b LTR MaLR -273 106 21 2 635 425 245 51 0 chr5 6653998 6654096 -145883163 - MTE2b-int LTR MaLR -1477 103 1 2 635 988 281 55 111 chr5 6654096 6654476 -145882783 - MTE2b LTR MaLR -3 376 18 2 635 22 0 0 0 chr5 6654490 6654512 -145882747 + AT_rich Low_complexity Low_complexity 1 22 0 2 635 23 78 0 0 chr5 6654590 6654641 -145882618 + AT_rich Low_complexity Low_complexity 1 51 0 2 635 23 68 0 0 chr5 6654800 6654844 -145882415 + AT_rich Low_complexity Low_complexity 1 44 0 2 635 272 27 0 26 chr5 6655053 6655091 -145882168 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 635 1091 222 130 60 chr5 6656922 6657306 -145879953 - Lx9 LINE L1 -1 7643 7233 2 635 337 209 0 0 chr5 6657587 6657654 -145879605 + Lx9 LINE L1 6933 6999 -645 2 635 22 35 0 0 chr5 6657732 6657761 -145879498 + AT_rich Low_complexity Low_complexity 1 29 0 2 635 1704 232 102 21 chr5 6658610 6659129 -145878130 + Lx9 LINE L1 6904 7464 -180 2 635 2864 217 41 18 chr5 6659373 6660002 -145877257 + Lx4B LINE L1 6398 7041 -17 2 635 219 69 0 0 chr5 6660103 6660132 -145877127 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 635 548 350 23 4 chr5 6660221 6660479 -145876780 + L1M2 LINE L1 4736 4998 -1145 2 635 410 324 101 27 chr5 6660490 6660896 -145876363 - L1_Mur3 LINE L1 -2225 3655 3220 2 635 466 330 40 14 chr5 6660912 6661370 -145875889 - L1M2 LINE L1 -368 5512 5040 2 635 236 282 33 66 chr5 6661471 6661623 -145875636 - MER67D LTR ERV1 -360 154 8 2 635 1037 133 32 22 chr5 6661630 6661815 -145875444 + B2_Mm2 SINE B2 1 187 -8 2 635 1092 175 21 0 chr5 6661844 6662033 -145875226 + B2_Mm2 SINE B2 1 193 -2 2 635 523 336 81 14 chr5 6662620 6662843 -145874416 + ORR1E LTR MaLR 1 238 -121 2 635 23 0 0 0 chr5 6663161 6663184 -145874075 + AT_rich Low_complexity Low_complexity 1 23 0 2 635 868 282 5 28 chr5 6663232 6663444 -145873815 + ID_B1 SINE B4 10 216 -8 2 635 993 235 42 13 chr5 6663558 6663868 -145873391 + Lx9 LINE L1 7194 7512 -132 2 635 527 107 0 12 chr5 6664005 6664090 -145873169 + (TA)n Simple_repeat Simple_repeat 1 84 0 2 635 292 208 39 55 chr5 6664093 6664220 -145873039 + Lx9 LINE L1 7519 7643 -1 2 635 1161 82 0 0 chr5 6664240 6664386 -145872873 - B1_Mus2 SINE Alu 0 147 2 2 635 224 241 0 0 chr5 6664548 6664602 -145872657 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 2 635 265 213 79 69 chr5 6664789 6664890 -145872369 + B4 SINE B4 191 292 0 2 635 216 170 0 0 chr5 6664894 6664947 -145872312 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 635 213 39 0 0 chr5 6665746 6665772 -145871487 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 635 6312 102 43 4 chr5 6666305 6667205 -145870054 - Lx3_Mus LINE L1 -164 6845 5917 2 635 780 50 0 0 chr5 6667205 6667306 -145869953 + (TCC)n Simple_repeat Simple_repeat 2 102 0 2 635 5970 102 43 4 chr5 6667306 6667342 -145869917 - Lx3_Mus LINE L1 -1100 5909 5874 2 635 4559 86 9 4 chr5 6667345 6667666 -145869593 - Lx3_Mus LINE L1 -297 5589 5267 2 635 288 0 0 0 chr5 6667666 6667698 -145869561 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 635 4559 86 9 4 chr5 6667698 6668054 -145869205 - Lx3_Mus LINE L1 -620 5266 4910 2 635 1386 169 166 0 chr5 6668049 6668386 -145868873 + L1_Mur1 LINE L1 4264 4656 -1221 2 635 626 171 0 8 chr5 6668386 6668510 -145868749 + CT-rich Low_complexity Low_complexity 1 123 0 2 635 261 0 0 0 chr5 6668520 6668549 -145868710 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 2 635 1122 62 0 0 chr5 6668549 6668684 -145868575 - B1_Mus1 SINE Alu -11 137 3 2 635 6736 38 17 0 chr5 6668726 6669591 -145867668 - L1Md_F2 LINE L1 0 6582 5703 2 635 2147 69 0 0 chr5 6669590 6669881 -145867378 + L1_Mm LINE L1 4715 5005 -878 2 635 1932 98 3 28 chr5 6669862 6669982 -145867277 + L1_Mur1 LINE L1 4640 4758 -1128 2 635 838 154 273 115 chr5 6669982 6670260 -145866999 - RLTRETN_Mm LTR ERVK 0 322 1 2 635 1932 98 3 28 chr5 6670260 6670463 -145866796 + L1_Mur1 LINE L1 4759 4955 -931 2 635 475 325 46 7 chr5 6670944 6671096 -145866163 + MTEa LTR MaLR 39 196 -183 2 635 389 20 20 0 chr5 6671096 6671146 -145866113 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2 635 248 329 100 32 chr5 6671169 6671907 -145865352 - L1MEg LINE L1 -3226 3153 2366 2 635 186 143 0 0 chr5 6671982 6672017 -145865242 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2 635 2414 181 165 104 chr5 6672017 6672701 -145864558 + RMER19A LTR ERVK 9 734 -3 2 635 377 324 54 31 chr5 6672828 6673082 -145864177 - L1MEg LINE L1 -4599 1879 1538 2 635 1267 256 77 17 chr5 6673100 6673453 -145863806 + ORR1D1 LTR MaLR 1 374 0 2 635 206 140 0 23 chr5 6673465 6673496 -145863763 + T-rich Low_complexity Low_complexity 15 44 0 2 635 1140 89 0 0 chr5 6673496 6673642 -145863617 - B1_Mus2 SINE Alu -1 146 1 2 635 206 140 0 23 chr5 6673642 6673654 -145863605 + T-rich Low_complexity Low_complexity 3 14 0 2 635 234 176 0 0 chr5 6674709 6674760 -145862499 + A-rich Low_complexity Low_complexity 1 51 0 2 635 238 217 0 16 chr5 6675021 6675082 -145862177 - Lx2 LINE L1 -679 6318 6259 2 635 225 0 0 0 chr5 6675219 6675244 -145862015 + (CCA)n Simple_repeat Simple_repeat 1 25 0 2 635 732 224 123 19 chr5 6675425 6675694 -145861565 + L1_Mur3 LINE L1 892 1188 -6540 2 635 653 198 36 24 chr5 6675687 6675853 -145861406 + L1_Mur2 LINE L1 41 208 -6504 2 635 294 89 0 0 chr5 6675854 6675899 -145861360 + L1_Mur3 LINE L1 1400 1444 -4433 2 635 876 173 0 0 chr5 6675907 6676063 -145861196 - Lx2 LINE L1 -759 6238 6083 2 635 582 122 11 0 chr5 6676052 6676142 -145861117 + Lx2 LINE L1 6504 6594 -403 2 635 852 94 113 18 chr5 6676147 6676305 -145860954 + RLTR9E LTR ERVK 1 173 -247 2 635 447 122 1 45 chr5 6676305 6676393 -145860866 + ETnERV2-int LTR ERVK 1879 1954 -5452 2 635 1035 106 165 10 chr5 6676393 6676593 -145860666 - RLTR9E LTR ERVK -178 231 1 2 635 2116 155 12 51 chr5 6676599 6677008 -145860251 + Lx2 LINE L1 6600 6992 -5 2 635 2254 191 33 13 chr5 6677092 6677644 -145859615 + L1_Mur2 LINE L1 1459 2021 -3859 2 635 207 0 0 0 chr5 6677647 6677670 -145859589 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 635 1915 194 46 73 chr5 6677671 6678276 -145858983 + L1_Mur2 LINE L1 3300 3888 -1992 2 635 1845 198 52 2 chr5 6678286 6678686 -145858573 - Lx LINE L1 -8 6646 6227 2 635 7514 215 26 25 chr5 6678733 6680609 -145856650 + L1_Mur2 LINE L1 3916 5793 -84 2 635 1247 289 40 72 chr5 6680608 6681523 -145855736 + RMER1B Other Other 1 836 -230 2 635 12476 110 25 6 chr5 6681536 6684393 -145852866 + L1Md_F LINE L1 208 3112 -2771 2 79 2155 101 27 45 chr5 6684393 6684726 -145852533 - IAPLTR2b LTR ERVK 0 327 1 2 636 5077 62 14 16 chr5 6684726 6685434 -145851825 - IAPEz-int LTR ERVK 0 6481 5775 2 636 3046 11 0 0 chr5 6685434 6685794 -145851465 - IAPEz-int LTR ERVK -2121 4360 4001 2 636 10599 70 73 25 chr5 6685792 6688351 -145848908 - IAPEz-int LTR ERVK -3707 2774 168 2 636 231 345 0 0 chr5 6688351 6688406 -145848853 - RLTR27 LTR ERVK -34 275 221 2 636 866 156 27 32 chr5 6688406 6688592 -145848667 - IAPEz-int LTR ERVK -6288 193 9 2 636 2160 98 27 45 chr5 6688593 6688926 -145848333 - IAPLTR2b LTR ERVK 0 327 1 2 636 17458 99 11 1 chr5 6688926 6691577 -145845682 + L1_Mm LINE L1 3107 5782 -101 2 636 1795 131 84 0 chr5 6691578 6691876 -145845383 - IAPEY2_LTR LTR ERVK 0 357 35 2 636 5057 125 35 2 chr5 6691885 6692717 -145844542 + L1_Mus3 LINE L1 5779 6637 -1 2 636 5805 88 33 1 chr5 6692713 6693541 -145843718 + L1_Mus3 LINE L1 5784 6637 -1 2 636 1660 290 52 25 chr5 6693567 6694628 -145842631 + Lx5 LINE L1 6062 7049 -1 2 636 24 0 0 0 chr5 6695591 6695615 -145841644 + AT_rich Low_complexity Low_complexity 1 24 0 2 636 191 274 0 0 chr5 6695732 6695783 -145841476 - MIRc SINE MIR -138 130 80 3 636 2052 176 6 19 chr5 6696126 6696490 -145840769 + ORR1B2 LTR MaLR 1 359 -8 3 636 1446 219 90 0 chr5 6696496 6696862 -145840397 + Lx6 LINE L1 5400 5798 -82 3 636 3020 179 40 6 chr5 6696855 6697480 -145839779 + Lx3C LINE L1 6139 6784 -192 3 636 1135 290 63 33 chr5 6697475 6698391 -145838868 + Lx6 LINE L1 5836 7080 -380 3 636 2684 247 107 43 chr5 6698396 6699373 -145837886 + ORR1B2-int LTR MaLR 288 1293 -77 3 636 291 54 0 0 chr5 6699857 6699894 -145837365 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 3 636 805 299 79 22 chr5 6700878 6701196 -145836063 - MER44A DNA MER2_type -1 338 3 3 636 4664 150 11 4 chr5 6701778 6702605 -145834654 + Lx2 LINE L1 5600 6432 -565 3 636 1481 165 55 31 chr5 6702611 6702686 -145834573 + Lx2A1 LINE L1 6669 6758 -250 3 636 636 14 0 0 chr5 6702686 6702759 -145834500 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 636 438 20 0 0 chr5 6702760 6702811 -145834448 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 636 1481 165 55 31 chr5 6702811 6703059 -145834200 + Lx2A1 LINE L1 6759 7000 -8 3 636 207 0 0 0 chr5 6703471 6703494 -145833765 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 636 1135 56 0 0 chr5 6703494 6703632 -145833627 - B1_Mm SINE Alu -4 143 6 3 636 256 328 16 16 chr5 6703763 6703887 -145833372 - L1M5 LINE L1 -519 5660 5537 3 636 395 83 17 0 chr5 6703937 6703997 -145833262 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 636 207 24 22 87 chr5 6704206 6704215 -145833044 + (GAAA)n Simple_repeat Simple_repeat 4 11 0 3 636 4425 93 119 7 chr5 6704215 6704931 -145832328 + L1_Mus3 LINE L1 5879 6638 0 3 636 1245 96 0 0 chr5 6704932 6705110 -145832149 + (GAA)n Simple_repeat Simple_repeat 3 180 0 3 636 2110 216 148 11 chr5 6706582 6707205 -145830054 - Lx9 LINE L1 -1 7643 6936 3 636 1239 260 57 83 chr5 6707308 6707744 -145829515 - RLTR23 LTR ERV1 0 430 6 3 636 288 300 104 17 chr5 6707950 6708123 -145829136 - RLTR4_MM-int LTR ERV1 -201 7577 7390 3 636 708 341 76 53 chr5 6708150 6709553 -145827706 - RLTR4_MM-int LTR ERV1 -3194 4584 3004 3 636 1884 141 56 104 chr5 6709553 6709966 -145827293 - RLTR9C LTR ERVK 0 393 1 3 636 708 350 77 50 chr5 6709966 6710963 -145826296 - RLTR4_MM-int LTR ERV1 -4496 3060 2012 3 636 435 371 39 23 chr5 6711159 6711597 -145825662 - RLTR4_MM-int LTR ERV1 -5805 1751 1307 3 636 22 56 0 0 chr5 6711745 6711781 -145825478 + AT_rich Low_complexity Low_complexity 1 36 0 3 636 24 53 0 0 chr5 6711876 6711914 -145825345 + AT_rich Low_complexity Low_complexity 1 38 0 3 636 219 36 0 0 chr5 6711922 6711950 -145825309 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 636 1128 250 78 89 chr5 6713362 6713700 -145823559 - RLTR23 LTR ERV1 -3 427 89 3 636 399 41 0 0 chr5 6713700 6713749 -145823510 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 3 636 1128 250 78 89 chr5 6713749 6713836 -145823423 - RLTR23 LTR ERV1 -342 88 7 3 636 1532 249 117 58 chr5 6713905 6714557 -145822702 - RMER6C LTR ERVK 0 690 1 3 636 3300 83 14 25 chr5 6714665 6715147 -145822112 + L1Md_F2 LINE L1 6105 6581 -1 3 636 1981 120 55 0 chr5 6716208 6716516 -145820743 - ORR1A2 LTR MaLR 0 327 3 3 636 185 413 11 0 chr5 6717822 6717914 -145819345 + L2 LINE L2 2972 3064 -355 3 636 239 367 43 37 chr5 6718072 6718236 -145819023 - MLT1N2 LTR MaLR -387 175 11 3 636 1792 137 64 51 chr5 6718653 6719171 -145818088 + RLTR45 LTR ERVK 1 476 -6 3 636 609 115 0 0 chr5 6719521 6719617 -145817642 + (TC)n Simple_repeat Simple_repeat 1 96 0 3 636 6182 164 22 12 chr5 6719617 6721019 -145816240 - Lx LINE L1 -2 6652 5254 3 636 3329 103 27 11 chr5 6720995 6721543 -145815716 - MusHAL1 LINE L1 -1108 1604 1048 3 636 284 330 46 0 chr5 6721543 6721652 -145815607 + Charlie1 DNA MER1_type 1667 1780 -1001 3 636 229 219 47 0 chr5 6721650 6721714 -145815545 - MTEb LTR MaLR -18 361 295 3 636 504 92 11 0 chr5 6721716 6721803 -145815456 + L1_Mus3 LINE L1 6551 6638 0 3 636 3848 176 43 18 chr5 6721818 6722536 -145814723 - L1VL2 LINE L1 -5511 824 89 3 636 11271 81 11 11 chr5 6722535 6724806 -145812453 + L1Md_F2 LINE L1 4383 6638 0 3 636 334 324 81 81 chr5 6725692 6725988 -145811271 - Charlie2b DNA MER1_type -2203 579 284 3 636 466 318 104 78 chr5 6725977 6726514 -145810745 + RMER13A LTR ERVK 111 681 -227 3 636 1250 211 34 0 chr5 6726612 6726878 -145810381 + L1_Mur2 LINE L1 5270 5544 -333 3 636 24 0 0 0 chr5 6727002 6727026 -145810233 + AT_rich Low_complexity Low_complexity 1 24 0 3 636 2521 75 9 3 chr5 6727525 6727873 -145809386 - L1_Mus1 LINE L1 0 6567 6218 3 636 767 261 60 0 chr5 6728657 6728856 -145808403 + B3 SINE B2 1 211 -5 3 636 39 68 0 0 chr5 6729015 6729089 -145808170 + AT_rich Low_complexity Low_complexity 1 74 0 3 636 383 250 35 90 chr5 6729214 6729359 -145807900 + Lx9 LINE L1 7024 7160 -484 3 636 270 0 0 0 chr5 6729364 6729394 -145807865 + (T)n Simple_repeat Simple_repeat 1 30 0 3 636 7135 119 17 2 chr5 6729434 6730510 -145806749 - L1_Mus3 LINE L1 0 6638 5542 3 636 14353 98 34 21 chr5 6730739 6733999 -145803260 + Lx3_Mus LINE L1 3711 7004 -5 3 636 1956 232 58 0 chr5 6734002 6734471 -145802788 + Lx6 LINE L1 5299 5798 -1183 3 636 801 301 67 44 chr5 6734543 6734904 -145802355 + RMER13A LTR ERVK 98 466 -394 3 636 2263 292 44 30 chr5 6735172 6736019 -145801240 + Lx6 LINE L1 5769 6627 -833 3 636 37887 30 0 1 chr5 6736031 6742465 -145794794 - L1Md_T LINE L1 0 6585 59 3 636 2129 273 79 21 chr5 6742465 6742599 -145794660 + Lx6 LINE L1 6614 6751 -709 3 636 405 0 0 0 chr5 6742599 6742644 -145794615 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 636 2129 273 79 21 chr5 6742644 6743131 -145794128 + Lx6 LINE L1 6752 7271 -189 3 636 405 278 110 30 chr5 6744086 6744286 -145792973 + B3 SINE B2 1 216 0 3 636 5040 130 25 8 chr5 6747108 6747221 -145790038 - Lx2 LINE L1 -2 6995 6882 3 636 225 65 0 0 chr5 6747221 6747252 -145790007 + (CCCA)n Simple_repeat Simple_repeat 3 33 0 3 636 5040 130 25 8 chr5 6747252 6747923 -145789336 - Lx2 LINE L1 -116 6881 6198 3 636 231 36 0 0 chr5 6748025 6748053 -145789206 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 636 411 113 0 0 chr5 6748764 6748826 -145788433 + (TCCC)n Simple_repeat Simple_repeat 4 65 0 3 636 1517 334 44 35 chr5 6749517 6750519 -145786740 - Lx9 LINE L1 -5 7468 6463 3 636 726 299 106 38 chr5 6750508 6750905 -145786354 + Lx9 LINE L1 6157 6580 -1064 3 636 479 17 17 0 chr5 6751646 6751706 -145785553 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 636 671 86 43 7 chr5 6752434 6752574 -145784685 + (TCTA)n Simple_repeat Simple_repeat 4 148 0 3 636 198 71 0 0 chr5 6752941 6752969 -145784290 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 636 2029 152 47 3 chr5 6753196 6753425 -145783834 + Lx LINE L1 6290 6518 -136 3 636 336 24 0 0 chr5 6753425 6753466 -145783793 + (TGGG)n Simple_repeat Simple_repeat 1 41 0 3 636 2029 152 47 3 chr5 6753466 6753579 -145783680 + Lx LINE L1 6519 6645 -9 3 636 17172 91 22 24 chr5 6753657 6755288 -145781971 + L1VL4 LINE L1 483 2112 -1447 3 636 1602 88 4 17 chr5 6755288 6755519 -145781740 + L1_Mus2 LINE L1 6338 6565 -1 3 636 17172 96 27 32 chr5 6755519 6755530 -145781729 + L1VL4 LINE L1 2113 2113 -1446 3 636 240 35 0 0 chr5 6755530 6755559 -145781700 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 3 636 17172 96 27 32 chr5 6755559 6757000 -145780259 + L1VL4 LINE L1 2113 3556 -3 3 636 421 277 68 118 chr5 6757326 6757547 -145779712 + B3 SINE B2 3 212 -4 3 636 2113 83 22 82 chr5 6758787 6759142 -145778117 + L1_Mus4 LINE L1 6302 6635 -1 3 636 21 36 0 0 chr5 6760188 6760216 -145777043 + AT_rich Low_complexity Low_complexity 1 28 0 3 636 24 32 0 0 chr5 6760294 6760325 -145776934 + AT_rich Low_complexity Low_complexity 1 31 0 3 636 218 349 97 39 chr5 6760581 6760840 -145776419 - L2 LINE L2 -947 2472 2199 3 636 1793 126 18 0 chr5 6761982 6762267 -145774992 - L1_Mm LINE L1 -2266 3617 3328 3 636 2360 121 39 5 chr5 6762269 6762652 -145774607 + L1_Mus3 LINE L1 6242 6637 -1 3 636 237 33 0 0 chr5 6762654 6762684 -145774575 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 3 636 253 245 0 54 chr5 6763262 6763318 -145773941 + B1F2 SINE Alu 8 60 -89 3 636 852 104 0 0 chr5 6763363 6763497 -145773762 + (GGA)n Simple_repeat Simple_repeat 2 135 0 3 636 186 240 123 74 chr5 6764619 6764700 -145772559 - L3 LINE CR1 -4394 95 11 3 636 282 302 12 0 chr5 6766826 6766912 -145770347 - L3 LINE CR1 -2296 2193 2107 3 636 207 114 0 0 chr5 6767456 6767491 -145769768 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 636 435 83 0 0 chr5 6767607 6767667 -145769592 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 3 636 789 331 42 52 chr5 6773647 6774144 -145763115 + Lx9 LINE L1 6923 7414 -230 3 636 440 77 0 15 chr5 6775020 6775086 -145762173 + (TA)n Simple_repeat Simple_repeat 1 65 0 3 636 325 296 28 45 chr5 6775087 6775264 -145761995 - L1MA9 LINE L1 -88 6224 6051 3 636 725 287 76 49 chr5 6777748 6778052 -145759207 + Lx8 LINE L1 7107 7418 -55 3 636 25 31 0 0 chr5 6779183 6779215 -145758044 + AT_rich Low_complexity Low_complexity 1 32 0 3 636 743 298 106 32 chr5 6780063 6780441 -145756818 - Lx8 LINE L1 -967 6506 6101 3 636 504 336 120 17 chr5 6780538 6780844 -145756415 + Lx8 LINE L1 6956 7306 -167 3 636 210 37 0 0 chr5 6781235 6781262 -145755997 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 3 636 362 322 86 22 chr5 6781411 6781643 -145755616 + L1MEc LINE L1 2129 2375 -4025 3 636 309 238 94 50 chr5 6781691 6781850 -145755409 + L1MA6 LINE L1 5831 5996 -304 3 636 1437 229 36 72 chr5 6781853 6782032 -145755227 + ORR1C1 LTR MaLR 1 163 -215 3 636 465 62 0 0 chr5 6782032 6782097 -145755162 + (TCTCTG)n Simple_repeat Simple_repeat 4 68 0 3 636 1437 229 36 72 chr5 6782097 6782307 -145754952 + ORR1C1 LTR MaLR 164 376 -2 3 636 1100 82 0 39 chr5 6782362 6782515 -145754744 + B1_Mm SINE Alu 1 147 0 3 636 264 88 43 29 chr5 6782519 6782589 -145754670 + A-rich Low_complexity Low_complexity 2 72 0 3 636 226 292 80 0 chr5 6782651 6782764 -145754495 + L1MA6 LINE L1 6121 6242 -58 3 636 225 351 0 0 chr5 6782897 6782954 -145754305 + RSINE1 SINE B4 10 66 -99 3 636 220 27 54 0 chr5 6782982 6783019 -145754240 + (TTG)n Simple_repeat Simple_repeat 2 40 0 3 636 219 280 8 41 chr5 6783601 6783724 -145753535 + (TATAA)n Simple_repeat Simple_repeat 5 123 0 4 636 1491 264 62 64 chr5 6783944 6784462 -145752797 + Lx7 LINE L1 6657 7173 -523 4 636 324 256 23 0 chr5 6784844 6784930 -145752329 + Lx7 LINE L1 7209 7296 -400 4 636 3305 35 5 0 chr5 6785079 6785473 -145751786 + MTA_Mm LTR MaLR 1 396 0 4 636 357 82 0 0 chr5 6786424 6786473 -145750786 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 636 276 203 0 86 chr5 6786674 6786744 -145750515 + RSINE1 SINE B4 13 76 -89 4 636 735 12 0 0 chr5 6786912 6786996 -145750263 + (GAAAA)n Simple_repeat Simple_repeat 3 86 0 4 636 833 298 34 59 chr5 6789787 6790111 -145747148 - MTE2a LTR MaLR 0 379 64 4 636 2097 342 35 27 chr5 6790326 6791452 -145745807 + RodERV21-int LTR ERV1 3171 4306 -685 4 636 914 316 26 37 chr5 6791564 6791992 -145745267 + RodERV21-int LTR ERV1 4463 4885 -106 4 636 273 393 34 14 chr5 6792408 6792617 -145744642 + MIR SINE MIR 47 259 -3 4 636 212 147 0 0 chr5 6793417 6793451 -145743808 + (GGAAA)n Simple_repeat Simple_repeat 3 36 0 4 636 4322 142 28 95 chr5 6795138 6796074 -145741185 + RLTR13D6 LTR ERVK 1 873 -29 4 636 882 325 63 29 chr5 6796705 6797054 -145740205 + MTEa LTR MaLR 6 366 -13 4 636 186 43 0 0 chr5 6798193 6798216 -145739043 + (A)n Simple_repeat Simple_repeat 1 23 0 4 636 614 266 77 39 chr5 6798611 6798818 -145738441 + B3 SINE B2 1 215 -1 4 636 346 306 148 15 chr5 6798885 6799081 -145738178 + MER58A DNA MER1_type 2 223 -1 4 636 25 0 0 0 chr5 6799243 6799268 -145737991 + AT_rich Low_complexity Low_complexity 1 25 0 4 636 207 0 0 0 chr5 6799393 6799416 -145737843 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 636 419 288 205 5 chr5 6799544 6799729 -145737530 + HAL1-3A_ME LINE L1 1977 2198 -660 4 636 183 80 0 0 chr5 6799729 6799754 -145737505 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 4 636 642 259 26 114 chr5 6799827 6800054 -145737205 - MTEb LTR MaLR -32 347 141 4 636 26 30 0 0 chr5 6800549 6800582 -145736677 + AT_rich Low_complexity Low_complexity 1 33 0 4 636 2373 132 54 95 chr5 6801584 6802087 -145735172 + RLTR45 LTR ERVK 1 482 0 4 636 4801 90 23 33 chr5 6802087 6802786 -145734473 + RLTR45-int LTR ERVK 1 692 -6552 4 636 1705 82 0 0 chr5 6803142 6803361 -145733898 + RLTR45-int LTR ERVK 692 910 -6334 4 636 732 154 0 0 chr5 6803472 6803595 -145733664 + RLTR45-int LTR ERVK 905 1027 -6217 4 636 350 356 24 17 chr5 6803911 6804208 -145733051 + RLTR45-int LTR ERVK 2246 2544 -3623 4 636 2583 39 26 0 chr5 6804471 6804783 -145732476 + RLTR45-int LTR ERVK 1329 1648 -5596 4 636 7344 152 13 13 chr5 6804872 6806276 -145730983 + RLTR45-int LTR ERVK 6331 7761 -456 4 636 2974 196 138 72 chr5 6807227 6808110 -145729149 + RMER19B LTR ERVK 1 902 0 4 636 22 0 0 0 chr5 6808201 6808223 -145729036 + AT_rich Low_complexity Low_complexity 1 22 0 4 636 280 213 53 13 chr5 6808887 6808963 -145728296 + ID4 SINE ID 1 79 -4 4 636 215 375 25 35 chr5 6809286 6809429 -145727830 - MIRc SINE MIR -39 169 34 4 636 22 56 0 0 chr5 6809910 6809946 -145727313 + AT_rich Low_complexity Low_complexity 1 36 0 4 636 564 233 39 0 chr5 6809953 6810082 -145727177 - B1_Mur1 SINE Alu -7 142 9 4 636 813 73 0 0 chr5 6810831 6810940 -145726319 + (TA)n Simple_repeat Simple_repeat 1 109 0 4 636 198 285 65 29 chr5 6811229 6811365 -145725894 - MIRb SINE MIR -94 168 37 4 636 1530 31 20 0 chr5 6811978 6812173 -145725086 - L1Md_A LINE L1 -2 6580 6382 4 636 613 61 20 0 chr5 6812691 6812790 -145724469 + (TTTG)n Simple_repeat Simple_repeat 2 102 0 4 636 1082 62 0 46 chr5 6812796 6812949 -145724310 - B1_Mm SINE Alu 0 147 2 4 636 1128 88 0 0 chr5 6813682 6813829 -145723430 - B1_Mus2 SINE Alu 0 147 1 4 636 21 36 0 0 chr5 6813933 6813961 -145723298 + AT_rich Low_complexity Low_complexity 1 28 0 4 636 1126 75 0 7 chr5 6814194 6814341 -145722918 + B1_Mus1 SINE Alu 1 146 -2 4 636 26 50 0 0 chr5 6814478 6814518 -145722741 + AT_rich Low_complexity Low_complexity 1 40 0 4 636 206 362 126 24 chr5 6814748 6814915 -145722344 - L4 LINE RTE -754 1275 1092 4 637 212 381 67 17 chr5 6815797 6815917 -145721342 - L4 LINE RTE -1248 781 656 4 637 780 51 0 0 chr5 6816037 6816135 -145721124 - MTA_Mm LTR MaLR 0 396 299 4 637 5602 89 16 38 chr5 6816135 6817030 -145720229 - RLTR13A3 LTR ERVK 0 978 1 4 637 1916 55 114 0 chr5 6817030 6817303 -145719956 - MTA_Mm LTR MaLR -92 304 1 4 637 699 191 7 7 chr5 6817382 6817519 -145719740 + Lx4A LINE L1 6908 7044 -14 4 637 455 33 16 0 chr5 6817519 6817580 -145719679 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 4 637 659 168 67 7 chr5 6819550 6819700 -145717559 - Lx LINE L1 0 6654 6496 4 637 181 209 116 0 chr5 6819855 6819898 -145717361 + MIRb SINE MIR 121 168 -100 4 637 562 133 83 8 chr5 6820222 6820343 -145716916 + Lx9 LINE L1 7367 7496 -148 4 637 628 229 7 0 chr5 6820346 6820486 -145716773 + B1_Mur2 SINE Alu 2 142 -7 4 637 439 254 24 0 chr5 6820688 6820814 -145716445 + Lx9 LINE L1 7509 7637 -7 4 637 417 39 0 0 chr5 6820944 6820995 -145716264 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 637 396 0 0 0 chr5 6820995 6821038 -145716221 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 637 648 300 50 79 chr5 6821043 6821322 -145715937 - B4A SINE B4 -21 271 1 4 637 234 0 0 0 chr5 6821673 6821699 -145715560 + (A)n Simple_repeat Simple_repeat 1 26 0 4 637 21 36 0 0 chr5 6822101 6822129 -145715130 + AT_rich Low_complexity Low_complexity 1 28 0 4 637 28 0 0 0 chr5 6823011 6823039 -145714220 + AT_rich Low_complexity Low_complexity 1 28 0 4 637 414 0 0 0 chr5 6823092 6823138 -145714121 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 637 757 223 0 0 chr5 6823205 6823353 -145713906 + B1_Mus1 SINE Alu 1 148 0 4 637 234 0 0 0 chr5 6823392 6823418 -145713841 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 637 234 0 0 0 chr5 6824509 6824535 -145712724 + (TCC)n Simple_repeat Simple_repeat 2 27 0 4 637 272 322 106 11 chr5 6824575 6824669 -145712590 - PB1D10 SINE Alu -46 103 1 4 637 282 56 0 0 chr5 6825184 6825220 -145712039 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 637 576 40 0 0 chr5 6825942 6826017 -145711242 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 637 224 92 61 15 chr5 6826392 6826458 -145710801 + A-rich Low_complexity Low_complexity 2 70 0 4 637 182 306 129 0 chr5 6827182 6827244 -145710015 - L3 LINE CR1 -3515 974 905 4 637 213 282 14 0 chr5 6827451 6827522 -145709737 + (CAGA)n Simple_repeat Simple_repeat 4 75 0 4 637 279 79 0 0 chr5 6827523 6827561 -145709698 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 637 603 162 0 0 chr5 6827764 6827906 -145709353 + CT-rich Low_complexity Low_complexity 2 143 0 4 637 384 22 0 0 chr5 6827906 6827951 -145709308 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 637 21 0 0 0 chr5 6828343 6828364 -145708895 + AT_rich Low_complexity Low_complexity 1 21 0 4 637 228 138 52 0 chr5 6828375 6828433 -145708826 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 4 637 33 0 0 0 chr5 6828874 6828907 -145708352 + AT_rich Low_complexity Low_complexity 1 33 0 4 637 271 346 57 69 chr5 6828979 6829081 -145708178 - MLT1D LTR MaLR -2 503 396 4 637 4579 102 99 22 chr5 6829081 6829546 -145707713 + L1_Mus3 LINE L1 5843 6368 -270 4 637 2864 52 0 0 chr5 6829546 6829892 -145707367 - ORR1A1 LTR MaLR 0 346 1 4 637 4579 102 99 22 chr5 6829892 6830165 -145707094 + L1_Mus3 LINE L1 6369 6638 0 4 637 271 346 57 69 chr5 6830165 6830307 -145706952 - MLT1D LTR MaLR -110 395 263 4 637 22 35 0 0 chr5 6830415 6830444 -145706815 + AT_rich Low_complexity Low_complexity 1 29 0 4 637 289 278 26 0 chr5 6830605 6830720 -145706539 + L1MA6 LINE L1 6177 6294 -6 4 637 463 189 7 99 chr5 6830758 6830822 -145706437 + Lx5 LINE L1 5233 5287 -590 4 637 3536 60 0 2 chr5 6830822 6831271 -145705988 + L1Md_F2 LINE L1 6135 6582 0 4 637 463 189 7 99 chr5 6831271 6831335 -145705924 + Lx5 LINE L1 5288 5348 -529 4 637 716 76 0 16 chr5 6831335 6831456 -145705803 + L1Md_F2 LINE L1 6464 6582 0 4 637 463 189 7 99 chr5 6831456 6831467 -145705792 + Lx5 LINE L1 5349 5359 -518 4 637 231 305 19 87 chr5 6831479 6831583 -145705676 + RLTR33 LTR ERVK 490 586 -92 4 637 4402 212 86 15 chr5 6831650 6833223 -145704036 + Lx5 LINE L1 5352 7044 -6 4 637 450 53 0 0 chr5 6833665 6833722 -145703537 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 637 3590 54 21 6 chr5 6834810 6835278 -145701981 + MT2C_Mm LTR ERVL 1 475 0 4 637 213 39 0 0 chr5 6835545 6835571 -145701688 + (CTTG)n Simple_repeat Simple_repeat 1 26 0 4 637 682 341 162 2 chr5 6836684 6837201 -145700058 + Lx8 LINE L1 6603 7202 -271 4 637 22 35 0 0 chr5 6838107 6838136 -145699123 + AT_rich Low_complexity Low_complexity 1 29 0 4 637 24 53 0 0 chr5 6838164 6838202 -145699057 + AT_rich Low_complexity Low_complexity 1 38 0 4 637 1091 65 7 0 chr5 6839021 6839160 -145698099 + B1_Mus2 SINE Alu 1 140 -7 4 637 321 26 0 0 chr5 6839160 6839198 -145698061 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 637 238 87 43 0 chr5 6839268 6839314 -145697945 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 637 406 188 6 93 chr5 6839623 6839779 -145697480 - Lx2B LINE L1 0 7008 6882 4 637 321 47 0 0 chr5 6840328 6840371 -145696888 + (TATG)n Simple_repeat Simple_repeat 2 44 0 4 637 7090 94 2 0 chr5 6842104 6843191 -145694068 - L1_Mus1 LINE L1 -1 6566 5477 4 637 2546 71 16 3 chr5 6843199 6843564 -145693695 - L1_Mm LINE L1 -3914 1969 1600 4 637 5170 101 168 1 chr5 6843550 6844367 -145692892 - L1VL1 LINE L1 -5466 956 4 4 637 604 289 73 19 chr5 6844691 6844896 -145692363 - B3 SINE B2 0 216 1 4 637 31448 79 3 6 chr5 6845798 6850873 -145686386 + L1Md_F2 LINE L1 526 5585 -298 4 637 7751 61 0 0 chr5 6850874 6851851 -145685408 + L1Md_F2 LINE L1 5587 6563 -19 4 637 2413 69 5 1 chr5 6851864 6852211 -145685048 + L1Md_F2 LINE L1 5238 5588 -298 4 637 8186 42 4 1 chr5 6852212 6853205 -145684054 + L1Md_F2 LINE L1 5587 6582 0 4 637 1694 199 64 72 chr5 6853295 6853684 -145683575 + ORR1B1 LTR MaLR 1 386 -8 4 637 3289 182 37 11 chr5 6853689 6854311 -145682948 + ORR1B1-int LTR MaLR 2 639 -1324 4 637 1090 248 29 136 chr5 6854341 6854356 -145682903 + ORR1B1-int LTR MaLR 583 611 -1352 4 637 1112 192 36 116 chr5 6854356 6854633 -145682626 + MT2B LTR ERVL 3 257 -344 4 637 1090 248 29 136 chr5 6854633 6854827 -145682432 + ORR1B1-int LTR MaLR 612 1016 -947 4 637 865 149 6 18 chr5 6854939 6855103 -145682156 + Lx3B LINE L1 6084 6245 -728 4 637 211 358 24 12 chr5 6855395 6855477 -145681782 - L3 LINE CR1 -40 4449 4367 4 637 23 0 0 0 chr5 6855973 6855996 -145681263 + AT_rich Low_complexity Low_complexity 1 23 0 5 637 444 315 39 58 chr5 6856019 6856174 -145681085 - RSINE1 SINE B4 -2 163 12 5 637 22 56 0 0 chr5 6856201 6856237 -145681022 + AT_rich Low_complexity Low_complexity 1 36 0 5 637 2179 62 24 7 chr5 6856450 6856743 -145680516 - L1Md_F2 LINE L1 -5 6577 6280 5 637 442 319 10 3 chr5 6857249 6857361 -145679898 + B1F SINE Alu 19 128 -22 5 637 4815 211 68 10 chr5 6857370 6858494 -145678765 + Lx2B LINE L1 5809 6998 -2 5 637 24 0 0 0 chr5 6858768 6858792 -145678467 + AT_rich Low_complexity Low_complexity 1 24 0 5 637 415 365 84 59 chr5 6858940 6859452 -145677807 + HAL1 LINE L1 1475 1999 -508 5 637 238 198 10 50 chr5 6859557 6859658 -145677601 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 5 637 23 54 0 0 chr5 6859848 6859885 -145677374 + AT_rich Low_complexity Low_complexity 1 37 0 5 637 690 285 101 15 chr5 6860792 6861130 -145676129 - L1_Mur3 LINE L1 -467 5413 5047 5 637 238 171 45 68 chr5 6861145 6861233 -145676026 - L1_Mur3 LINE L1 -999 4881 4796 5 637 713 300 30 15 chr5 6861378 6861581 -145675678 + B3 SINE B2 7 212 -4 5 637 808 289 64 121 chr5 6861622 6862275 -145674984 + Lx7 LINE L1 5590 6205 -1491 5 637 2151 266 68 16 chr5 6862306 6862971 -145674288 + Lx9 LINE L1 6906 7604 -40 5 637 1685 344 66 40 chr5 6863034 6864171 -145673088 + Lx8 LINE L1 6278 7443 -30 5 637 26824 84 13 30 chr5 6864343 6867568 -145669691 + L1_Mus2 LINE L1 1989 5232 -651 5 637 477 0 0 0 chr5 6867568 6867621 -145669638 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 637 26824 77 19 13 chr5 6867621 6868636 -145668623 + L1_Mus2 LINE L1 5233 6165 -401 5 637 29 0 0 0 chr5 6869098 6869127 -145668132 + AT_rich Low_complexity Low_complexity 1 29 0 5 637 813 11 0 0 chr5 6869191 6869285 -145667974 + (CA)n Simple_repeat Simple_repeat 2 95 0 5 637 367 331 65 42 chr5 6869380 6869694 -145667565 + MTEb LTR MaLR 5 377 -2 5 637 443 372 35 6 chr5 6870608 6870761 -145666498 + B3A SINE B2 5 162 -36 5 637 414 0 0 0 chr5 6870761 6870807 -145666452 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 637 443 372 35 6 chr5 6870807 6870826 -145666433 + B3A SINE B2 163 181 -17 5 637 201 74 0 0 chr5 6870835 6870862 -145666397 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 637 181 364 29 29 chr5 6873009 6873111 -145664148 - L2c LINE L2 -1 3386 3285 5 637 3905 15 0 0 chr5 6874186 6874642 -145662617 - L1Md_T LINE L1 -413 5470 5015 5 637 1193 15 0 0 chr5 6874640 6874774 -145662485 + L1Md_T LINE L1 5453 5586 -297 5 637 8879 10 0 0 chr5 6874774 6875770 -145661489 + L1Md_T LINE L1 5587 6582 0 5 637 357 24 0 0 chr5 6876073 6876115 -145661144 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 637 297 0 0 0 chr5 6878322 6878355 -145658904 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 637 669 179 0 0 chr5 6878458 6878620 -145658639 + (TA)n Simple_repeat Simple_repeat 1 162 0 5 637 441 213 94 8 chr5 6878622 6878750 -145658509 + RLTR21 LTR ERVK 955 1093 -479 5 637 294 0 0 61 chr5 6878750 6878799 -145658460 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 5 637 2406 127 49 2 chr5 6878855 6879392 -145657867 + L1_Mus3 LINE L1 5400 5970 -684 5 637 526 87 0 0 chr5 6879388 6879457 -145657802 - L1_Mus3 LINE L1 -473 6165 6097 5 637 3238 107 12 20 chr5 6879455 6879943 -145657316 + L1_Mus3 LINE L1 6151 6634 -4 5 637 4579 171 119 14 chr5 6879949 6880881 -145656378 + Lx2B LINE L1 5956 6985 -15 5 637 4665 80 0 0 chr5 6882448 6883049 -145654210 - L1_Mus1 LINE L1 0 6567 5967 5 637 4355 74 2 0 chr5 6883050 6883708 -145653551 + L1_Mus1 LINE L1 5309 5969 -597 5 637 254 105 0 0 chr5 6883770 6883808 -145653451 + MER57A-int LTR ERV1 1110 1147 -5040 5 637 220 319 137 102 chr5 6883875 6884130 -145653129 - B4A SINE B4 -2 290 27 5 637 212 288 18 6 chr5 6884472 6884636 -145652623 + (TATATG)n Simple_repeat Simple_repeat 4 169 0 5 637 321 185 0 0 chr5 6884695 6884760 -145652499 + (TA)n Simple_repeat Simple_repeat 2 66 0 5 637 335 380 0 6 chr5 6884764 6884931 -145652328 + (TATG)n Simple_repeat Simple_repeat 1 166 0 5 637 366 23 0 0 chr5 6885112 6885155 -145652104 + (TTG)n Simple_repeat Simple_repeat 3 45 0 5 637 219 357 40 79 chr5 6885155 6885181 -145652078 - ID_B1 SINE B4 -7 217 159 5 637 311 306 23 12 chr5 6885181 6885267 -145651992 - B1_Mur1 SINE Alu -37 112 26 5 637 219 357 40 79 chr5 6885267 6885299 -145651960 - ID_B1 SINE B4 -7 158 79 5 637 206 118 0 0 chr5 6885452 6885486 -145651773 + (TTTTG)n Simple_repeat Simple_repeat 5 38 0 5 637 311 244 15 30 chr5 6886740 6886871 -145650388 + (TA)n Simple_repeat Simple_repeat 2 130 0 5 637 1124 82 7 0 chr5 6886898 6887045 -145650214 - B1_Mus1 SINE Alu 0 148 1 5 637 21 36 0 0 chr5 6887243 6887271 -145649988 + AT_rich Low_complexity Low_complexity 1 28 0 5 637 462 297 393 73 chr5 6887604 6887866 -145649393 - ORR1E LTR MaLR -2 357 13 5 637 3183 129 30 10 chr5 6887881 6888680 -145648579 - L1_Mus4 LINE L1 -25 6611 5510 5 637 1587 164 0 7 chr5 6888676 6888964 -145648295 + L1_Mm LINE L1 4632 4917 -966 5 637 3340 41 30 94 chr5 6888964 6889472 -145647787 + IAPLTR2_Mm LTR ERVK 1 475 0 5 637 3536 84 16 28 chr5 6889473 6890288 -145646971 + IAPEz-int LTR ERVK 9 662 -5819 5 637 2135 86 0 0 chr5 6890288 6890566 -145646693 + IAPEz-int LTR ERVK 1359 1636 -4845 5 637 5717 68 14 0 chr5 6890565 6891299 -145645960 + IAPEz-int LTR ERVK 5736 6479 -2 5 637 3231 31 124 12 chr5 6891301 6891728 -145645531 + IAPLTR2_Mm LTR ERVK 1 475 0 5 637 3689 162 5 0 chr5 6891729 6892346 -145644913 + L1_Mm LINE L1 4913 5532 -351 5 637 239 175 18 0 chr5 6893972 6894029 -145643230 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 637 558 0 0 0 chr5 6894254 6894316 -145642943 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 637 387 0 0 0 chr5 6894316 6894359 -145642900 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 637 198 333 191 33 chr5 6894491 6894643 -145642616 - MIRm SINE MIR -6 202 27 5 637 23 33 0 0 chr5 6894816 6894846 -145642413 + AT_rich Low_complexity Low_complexity 1 30 0 5 637 203 0 37 0 chr5 6895129 6895156 -145642103 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 637 306 0 0 0 chr5 6896002 6896036 -145641223 + (A)n Simple_repeat Simple_repeat 1 34 0 5 637 345 387 81 21 chr5 6896552 6896787 -145640472 + B4 SINE B4 26 274 -18 5 637 381 43 0 0 chr5 6896821 6896868 -145640391 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 637 28 79 0 0 chr5 6896898 6896961 -145640298 + AT_rich Low_complexity Low_complexity 1 63 0 5 637 21 36 0 0 chr5 6897226 6897254 -145640005 + AT_rich Low_complexity Low_complexity 1 28 0 5 637 2678 183 64 22 chr5 6897363 6898001 -145639258 - L1_Mur3 LINE L1 -1970 3910 3246 5 637 27 0 0 0 chr5 6898003 6898030 -145639229 + AT_rich Low_complexity Low_complexity 1 27 0 5 637 4806 134 38 0 chr5 6898321 6898430 -145638829 - Lx LINE L1 -4 6650 6534 5 637 210 37 0 0 chr5 6898430 6898457 -145638802 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 5 637 4806 134 38 0 chr5 6898457 6899102 -145638157 - Lx LINE L1 -121 6533 5869 5 637 3806 95 0 6 chr5 6899099 6899637 -145637622 + L1Md_F2 LINE L1 6035 6569 -13 5 637 3363 217 128 5 chr5 6899652 6900615 -145636644 + L1_Mur3 LINE L1 4285 5365 -515 5 637 8019 136 39 75 chr5 6900616 6901611 -145635648 + Lx6 LINE L1 4319 5354 -529 5 637 7896 49 8 0 chr5 6901611 6902598 -145634661 + L1Md_F2 LINE L1 5587 6581 -1 5 637 8019 196 58 51 chr5 6902598 6903700 -145633559 + Lx6 LINE L1 5355 6365 -1095 5 637 558 67 0 0 chr5 6903700 6903775 -145633484 + (TC)n Simple_repeat Simple_repeat 1 75 0 5 637 5652 266 81 22 chr5 6903775 6904780 -145632479 + Lx6 LINE L1 6366 7452 -8 5 637 31388 84 2 1 chr5 6904829 6910221 -145627038 + L1Md_F2 LINE L1 189 5586 -297 5 637 8109 48 1 1 chr5 6910221 6911216 -145626043 + L1Md_F2 LINE L1 5587 6581 -1 5 637 25 0 0 0 chr5 6913759 6913784 -145623475 + AT_rich Low_complexity Low_complexity 1 25 0 5 637 21 36 0 0 chr5 6914318 6914346 -145622913 + AT_rich Low_complexity Low_complexity 1 28 0 5 637 277 275 0 0 chr5 6915618 6915687 -145621572 - U4 snRNA snRNA -76 69 1 5 637 34 65 0 0 chr5 6915926 6915988 -145621271 + AT_rich Low_complexity Low_complexity 1 62 0 5 637 21 36 0 0 chr5 6916030 6916058 -145621201 + AT_rich Low_complexity Low_complexity 1 28 0 5 637 23 0 0 0 chr5 6916156 6916179 -145621080 + AT_rich Low_complexity Low_complexity 1 23 0 5 637 1536 148 37 0 chr5 6916352 6916596 -145620663 - Lx3C LINE L1 -87 6889 6637 5 637 486 75 0 0 chr5 6916647 6916714 -145620545 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 637 1887 140 0 0 chr5 6916714 6917000 -145620259 + L1_Mus4 LINE L1 5393 5678 -205 5 637 2325 72 0 7 chr5 6916987 6917295 -145619964 + L1_Mus4 LINE L1 5795 6100 -536 5 637 651 26 0 0 chr5 6917938 6918015 -145619244 + (GAAA)n Simple_repeat Simple_repeat 4 80 0 5 637 654 199 59 0 chr5 6918586 6918722 -145618537 + RodERV21-int LTR ERV1 143 286 -4705 5 637 1006 288 53 48 chr5 6918727 6919125 -145618134 + RodERV21-int LTR ERV1 455 854 -4137 5 637 432 55 0 0 chr5 6919125 6919180 -145618079 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 637 503 200 201 48 chr5 6919383 6919651 -145617608 - RLTR6_Mm LTR ERV1 -70 584 276 5 637 822 130 12 99 chr5 6919664 6919835 -145617424 - RLTR6_Mm LTR ERV1 -498 156 1 5 637 732 256 63 43 chr5 6920299 6920917 -145616342 + RLTR42-int LTR ERVK 1863 2255 -3267 5 637 2740 67 0 3 chr5 6920918 6921273 -145615986 + L1_Mm LINE L1 4630 5010 -1136 5 637 4297 24 69 2 chr5 6921273 6921808 -145615451 + L1Md_F3 LINE L1 5999 6569 -15 5 637 953 290 15 25 chr5 6921808 6921848 -145615411 + L1_Mm LINE L1 5011 5050 -1096 5 637 530 282 91 102 chr5 6922295 6923139 -145614120 + RLTR19-int LTR ERVK 2607 3962 -2175 5 637 245 261 0 0 chr5 6923756 6923821 -145613438 + GA-rich Low_complexity Low_complexity 2 66 0 5 637 21 36 0 0 chr5 6924465 6924493 -145612766 + AT_rich Low_complexity Low_complexity 1 28 0 5 637 21 36 0 0 chr5 6924600 6924628 -145612631 + AT_rich Low_complexity Low_complexity 1 28 0 5 637 633 98 27 0 chr5 6925533 6925645 -145611614 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 5 637 578 113 28 0 chr5 6926425 6926531 -145610728 - L1_Mus3 LINE L1 -7 6631 6523 5 637 7509 103 1 11 chr5 6926593 6927018 -145610241 + L1_Mus1 LINE L1 5181 5605 -278 5 637 2542 138 39 47 chr5 6927018 6927504 -145609755 + RLTR45 LTR ERVK 1 482 0 5 637 7509 72 0 9 chr5 6927504 6928539 -145608720 + L1_Mus1 LINE L1 5606 6567 0 5 637 3894 22 0 0 chr5 6929292 6929747 -145607512 + L1Md_A LINE L1 5132 5586 -297 5 637 8630 24 0 0 chr5 6929747 6930827 -145606432 + L1Md_A LINE L1 5587 6582 0 5 637 180 357 58 29 chr5 6930981 6931154 -145606105 + MIRb SINE MIR 33 210 -58 5 637 315 247 0 90 chr5 6931934 6932023 -145605236 - PB1D7 SINE Alu 0 120 40 5 637 2261 172 5 8 chr5 6932759 6933146 -145604113 + ORR1B1 LTR MaLR 1 386 -8 5 637 7493 74 15 2 chr5 6933256 6934598 -145602661 - L1_Mus1 LINE L1 0 6567 5210 5 637 27 49 0 0 chr5 6935999 6936040 -145601219 + AT_rich Low_complexity Low_complexity 1 41 0 5 637 2627 159 26 68 chr5 6938872 6939458 -145597801 + RLTR31_Mm LTR ERVK 1 561 0 6 637 5109 39 2 0 chr5 6939764 6940380 -145596879 + L1Md_F2 LINE L1 5956 6572 -10 6 637 369 0 0 0 chr5 6940780 6940821 -145596438 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 637 422 191 0 17 chr5 6942542 6942659 -145594600 + GA-rich Low_complexity Low_complexity 4 118 0 6 637 208 209 132 15 chr5 6944686 6944754 -145592505 - L3 LINE CR1 -643 3846 3771 6 637 22 80 0 0 chr5 6944797 6944847 -145592412 + AT_rich Low_complexity Low_complexity 1 50 0 6 637 327 254 14 0 chr5 6946611 6946682 -145590577 + Lx9 LINE L1 7099 7170 -474 6 79 667 307 70 0 chr5 6946683 6946911 -145590348 + MTD LTR MaLR 176 419 0 6 638 1236 84 0 0 chr5 6946925 6947092 -145590167 + L1_Mus1 LINE L1 6401 6567 0 6 638 405 0 0 0 chr5 6947107 6947152 -145590107 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 6 638 186 312 71 27 chr5 6949202 6949314 -145587945 + MIRb SINE MIR 113 229 -39 6 638 4070 87 22 0 chr5 6950675 6951229 -145586030 - L1_Mus2 LINE L1 -1 6565 6000 6 638 800 67 0 9 chr5 6951229 6951328 -145585931 + L1_Mus1 LINE L1 5601 5699 -868 6 638 375 23 0 0 chr5 6951555 6951599 -145585660 + (TAA)n Simple_repeat Simple_repeat 3 46 0 6 638 1060 88 7 0 chr5 6951758 6951905 -145585354 - B1_Mus1 SINE Alu 0 148 1 6 638 561 279 88 10 chr5 6952282 6952318 -145584941 - B3 SINE B2 -4 212 166 6 638 561 68 0 0 chr5 6952318 6952392 -145584867 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 638 561 279 88 10 chr5 6952392 6952547 -145584712 - B3 SINE B2 -51 165 8 6 638 7738 34 2 1 chr5 6952705 6953628 -145583631 + L1Md_F3 LINE L1 5651 6574 -10 6 638 21 36 0 0 chr5 6953762 6953790 -145583469 + AT_rich Low_complexity Low_complexity 1 28 0 6 638 336 271 81 54 chr5 6954599 6954747 -145582512 - MIRc SINE MIR -9 259 108 6 638 26 30 0 0 chr5 6955020 6955053 -145582206 + AT_rich Low_complexity Low_complexity 1 33 0 6 638 30 27 0 0 chr5 6955258 6955295 -145581964 + AT_rich Low_complexity Low_complexity 1 37 0 6 638 267 286 115 32 chr5 6956351 6956527 -145580732 + MIRb SINE MIR 75 268 0 6 638 23 78 0 0 chr5 6957295 6957346 -145579913 + AT_rich Low_complexity Low_complexity 1 51 0 6 638 40 21 0 0 chr5 6957578 6957625 -145579634 + AT_rich Low_complexity Low_complexity 1 47 0 6 638 8477 15 0 0 chr5 6958105 6959065 -145578194 + L1Md_A LINE L1 5623 6582 0 6 638 305 368 55 30 chr5 6959449 6959684 -145577575 + L1VL2 LINE L1 389 629 -6005 6 638 15637 176 40 17 chr5 6959703 6960456 -145576803 + L1VL2 LINE L1 742 1496 -4381 6 638 1030 105 0 0 chr5 6960456 6960599 -145576660 + B1_Mm SINE Alu 2 144 -3 6 638 278 0 54 0 chr5 6960599 6960636 -145576623 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 6 638 15637 184 127 52 chr5 6960636 6961344 -145575915 + L1VL2 LINE L1 1497 2191 -3686 6 638 423 0 0 0 chr5 6961344 6961391 -145575868 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 638 15637 184 127 52 chr5 6961391 6962537 -145574722 + L1VL2 LINE L1 2192 3342 -2535 6 638 984 75 0 0 chr5 6962537 6962670 -145574589 + L1_Mus2 LINE L1 6428 6560 -6 6 638 15637 184 127 52 chr5 6962670 6963629 -145573630 + L1VL2 LINE L1 3343 4631 -1246 6 638 220 27 54 0 chr5 6963629 6963666 -145573593 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 638 15637 184 127 52 chr5 6963666 6964684 -145572575 + L1VL2 LINE L1 4632 5666 -211 6 638 3175 85 18 2 chr5 6964684 6965121 -145572138 + L1_Mus1 LINE L1 6124 6567 0 6 638 15637 184 127 52 chr5 6965121 6965236 -145572023 + L1VL2 LINE L1 5667 5766 -111 6 638 40440 17 0 6 chr5 6965241 6971399 -145565860 - L1Md_A LINE L1 0 6582 469 6 638 6406 172 20 13 chr5 6971399 6972617 -145564642 + Lx2B LINE L1 5769 6995 -5 6 638 225 132 0 0 chr5 6973534 6973572 -145563687 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 638 258 56 0 0 chr5 6974005 6974041 -145563218 + (T)n Simple_repeat Simple_repeat 1 36 0 6 638 38 68 0 0 chr5 6974246 6974319 -145562940 + AT_rich Low_complexity Low_complexity 1 73 0 6 638 756 316 129 33 chr5 6974577 6975431 -145561828 + Lx8 LINE L1 5592 6531 -942 6 638 23 0 0 0 chr5 6975957 6975980 -145561279 + AT_rich Low_complexity Low_complexity 1 23 0 6 638 31 0 0 0 chr5 6976280 6976311 -145560948 + AT_rich Low_complexity Low_complexity 1 31 0 6 638 2498 164 19 53 chr5 6976611 6977138 -145560121 - Lx2 LINE L1 -1 6996 6488 6 638 1028 258 46 13 chr5 6977139 6977441 -145559818 + Lx2B LINE L1 6686 6997 -3 6 638 32 43 0 0 chr5 6977467 6977513 -145559746 + AT_rich Low_complexity Low_complexity 1 46 0 6 638 629 135 37 6 chr5 6977834 6977998 -145559261 + (TA)n Simple_repeat Simple_repeat 2 170 0 6 638 255 248 9 71 chr5 6978389 6978502 -145558757 + Lx9 LINE L1 7506 7611 -33 6 638 440 275 107 85 chr5 6978593 6978863 -145558396 + RMER20B LTR ERVK 90 365 -262 6 638 1062 82 0 0 chr5 6979028 6979174 -145558085 + (GAAA)n Simple_repeat Simple_repeat 2 147 0 6 638 308 189 33 11 chr5 6979192 6979283 -145557976 + (TTATA)n Simple_repeat Simple_repeat 1 93 0 6 638 31 44 0 0 chr5 6979373 6979418 -145557841 + AT_rich Low_complexity Low_complexity 1 45 0 6 638 640 313 69 13 chr5 6979895 6980358 -145556901 + L1MC1 LINE L1 4568 5056 -1090 6 638 213 36 0 0 chr5 6980413 6980435 -145556824 + (TA)n Simple_repeat Simple_repeat 1 22 0 6 638 468 51 0 0 chr5 6980435 6980494 -145556765 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 638 318 339 67 63 chr5 6980526 6980765 -145556494 + L1MD LINE L1 5076 5315 -831 6 638 265 337 35 50 chr5 6980828 6981087 -145556172 + L1MD LINE L1 5385 5639 -2356 6 638 722 118 7 7 chr5 6981157 6981294 -145555965 - L1_Mus4 LINE L1 0 6636 6500 6 638 2686 80 53 6 chr5 6981294 6981668 -145555591 + L1_Mus4 LINE L1 6053 6437 -199 6 638 468 35 0 0 chr5 6981680 6981738 -145555521 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 638 229 309 39 19 chr5 6981741 6981896 -145555363 + L1MC1 LINE L1 5786 5943 -390 6 638 228 262 0 12 chr5 6982090 6982171 -145555088 + L1MC1 LINE L1 6155 6234 -110 6 638 280 335 123 42 chr5 6984073 6984285 -145552974 + B4 SINE B4 1 229 -63 6 638 243 146 0 0 chr5 6984426 6984467 -145552792 + (ATG)n Simple_repeat Simple_repeat 1 41 0 6 638 333 0 0 0 chr5 6986105 6986142 -145551117 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 638 180 0 0 0 chr5 6986142 6986161 -145551098 + (GA)n Simple_repeat Simple_repeat 1 20 0 6 638 1574 331 51 7 chr5 6986617 6987299 -145549960 + Lx8 LINE L1 6577 7290 -406 6 638 3558 133 71 48 chr5 6987373 6987496 -145549763 - MusHAL1 LINE L1 -2616 738 606 6 638 258 32 0 0 chr5 6987496 6987527 -145549732 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 638 3558 133 71 48 chr5 6987527 6988119 -145549140 - MusHAL1 LINE L1 -2749 605 6 6 638 2293 200 86 78 chr5 6988681 6989365 -145547894 - RMER6C LTR ERVK 0 690 1 6 638 1132 301 30 33 chr5 6989369 6989478 -145547781 - ORR1D2 LTR MaLR -5 365 258 6 638 983 103 5 93 chr5 6989478 6989671 -145547588 + L1Md_F2 LINE L1 6395 6570 -12 6 638 1132 301 30 33 chr5 6989671 6989922 -145547337 - ORR1D2 LTR MaLR -113 257 6 6 638 1815 236 199 4 chr5 6989969 6990536 -145546723 - ORR1D2-int LTR MaLR -679 691 14 6 638 1111 282 64 9 chr5 6990551 6990880 -145546379 - ORR1D2 LTR MaLR -4 366 20 6 638 327 49 0 0 chr5 6991961 6992002 -145545257 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 638 471 48 0 0 chr5 6992003 6992065 -145545194 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 638 649 326 22 0 chr5 6992066 6992244 -145545015 - ID_B1 SINE B4 -9 215 34 6 638 730 204 172 32 chr5 6992473 6992794 -145544465 + Lx7 LINE L1 7106 7680 -16 6 638 24 53 0 0 chr5 6992864 6992902 -145544357 + AT_rich Low_complexity Low_complexity 1 38 0 6 638 541 272 14 0 chr5 6993442 6993589 -145543670 - B1_Mur2 SINE Alu 0 149 1 6 638 22 56 0 0 chr5 6993675 6993711 -145543548 + AT_rich Low_complexity Low_complexity 1 36 0 6 638 228 106 43 0 chr5 6993792 6993839 -145543420 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 638 1280 252 67 18 chr5 6995056 6995399 -145541860 - ORR1B2 LTR MaLR -7 360 1 6 638 268 313 20 10 chr5 6995549 6995649 -145541610 + PB1D9 SINE Alu 18 118 -2 6 638 31 58 0 0 chr5 6995796 6995848 -145541411 + AT_rich Low_complexity Low_complexity 1 52 0 6 638 417 175 23 13 chr5 6995874 6995965 -145541294 + MTC LTR MaLR 288 421 0 6 638 274 250 37 24 chr5 6995968 6996050 -145541209 + Lx7 LINE L1 7160 7242 -454 6 638 708 351 67 23 chr5 6996204 6996595 -145540664 - MLT1A1 LTR MaLR 0 408 1 6 638 29 28 0 0 chr5 6996640 6996676 -145540583 + AT_rich Low_complexity Low_complexity 1 36 0 6 638 869 311 89 39 chr5 6997497 6998272 -145538987 + Lx8 LINE L1 5138 5979 -1717 6 638 510 182 0 0 chr5 6998390 6998500 -145538759 + (CATA)n Simple_repeat Simple_repeat 3 112 0 6 638 254 322 32 32 chr5 6998563 6998656 -145538603 + Lx8 LINE L1 6197 6289 -1184 6 638 1041 317 128 2 chr5 6998684 6999177 -145538082 + Lx8 LINE L1 6834 7388 -85 6 638 2993 154 66 158 chr5 6999207 7000000 -145537259 - RLTR21 LTR ERVK -25 1547 828 6 638 2907 139 141 7 chr5 7000000 7000729 -145536530 - RLTR21 LTR ERVK -745 827 1 1 638 613 304 6 0 chr5 7000820 7000978 -145536281 + B3A SINE B2 22 180 -18 2 638 610 309 62 5 chr5 7000986 7001181 -145536078 + B3 SINE B2 9 214 -2 3 638 22 0 0 0 chr5 7001387 7001409 -145535850 + AT_rich Low_complexity Low_complexity 1 22 0 4 638 272 329 7 20 chr5 7001430 7001569 -145535690 + L1MC3 LINE L1 6659 6776 -1009 5 638 2967 84 2 38 chr5 7001718 7002140 -145535119 - MTB_Mm LTR MaLR 0 407 1 6 638 454 350 37 0 chr5 7002192 7002355 -145534904 - Lx9 LINE L1 -900 6744 6576 7 638 347 0 23 0 chr5 7003668 7003711 -145533548 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 8 638 218 32 0 31 chr5 7003711 7003742 -145533517 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 9 638 681 212 234 22 chr5 7004195 7004570 -145532689 + RMER6C LTR ERVK 1 497 -223 1 638 1326 85 70 0 chr5 7005047 7005247 -145532012 - RLTR27 LTR ERVK -95 214 1 1 638 21 0 0 0 chr5 7005281 7005302 -145531957 + AT_rich Low_complexity Low_complexity 1 21 0 1 638 253 290 0 0 chr5 7005923 7005992 -145531267 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 1 638 466 109 0 0 chr5 7006788 7006852 -145530407 + B1_Mus2 SINE Alu 77 140 -7 1 638 306 0 0 0 chr5 7006856 7006890 -145530369 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 638 31 0 0 0 chr5 7008792 7008823 -145528436 + AT_rich Low_complexity Low_complexity 1 31 0 1 638 2308 201 35 4 chr5 7009205 7009689 -145527570 - RLTR19 LTR ERVK 0 499 1 1 638 2200 194 155 6 chr5 7009804 7010307 -145526952 + Lx4A LINE L1 6461 7038 -20 1 638 234 91 0 0 chr5 7010311 7010344 -145526915 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1 638 17907 185 42 13 chr5 7010492 7015377 -145521882 + Lx2B LINE L1 1963 6995 -5 2 638 29 60 0 0 chr5 7015613 7015663 -145521596 + AT_rich Low_complexity Low_complexity 1 50 0 2 638 22 0 0 0 chr5 7016018 7016040 -145521219 + AT_rich Low_complexity Low_complexity 1 22 0 2 638 1675 305 63 18 chr5 7016457 7017124 -145520135 - Tigger1 DNA MER2_type 0 2418 1722 2 638 1530 290 166 23 chr5 7017141 7017922 -145519337 - Tigger1 DNA MER2_type -892 1526 634 2 638 543 289 19 26 chr5 7018164 7018320 -145518939 + MTE2b LTR MaLR 221 375 -4 2 638 25 0 0 0 chr5 7018349 7018374 -145518885 + AT_rich Low_complexity Low_complexity 1 25 0 2 638 616 210 6 6 chr5 7019009 7019167 -145518092 + (TA)n Simple_repeat Simple_repeat 1 158 0 2 638 231 213 0 0 chr5 7020148 7020195 -145517064 + CT-rich Low_complexity Low_complexity 2 48 0 2 638 1117 28 11 53 chr5 7020198 7020386 -145516873 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 638 577 224 37 0 chr5 7020395 7020529 -145516730 - B1_Mur2 SINE Alu -10 139 1 2 638 1840 150 3 9 chr5 7021026 7021349 -145515910 - Lx2 LINE L1 -1 6996 6676 3 638 24 0 0 0 chr5 7021816 7021840 -145515419 + AT_rich Low_complexity Low_complexity 1 24 0 3 638 5970 81 2 2 chr5 7022226 7023030 -145514229 - L1_Mus3 LINE L1 -8 6630 5827 3 638 1761 126 10 27 chr5 7023030 7023323 -145513936 + L1_Mm LINE L1 4806 5093 -790 3 638 1407 205 20 20 chr5 7023486 7023790 -145513469 - Lx4B LINE L1 -289 6769 6466 3 638 228 299 21 84 chr5 7023790 7023885 -145513374 - RSINE1 SINE B4 -74 91 3 3 638 368 193 95 56 chr5 7024050 7024176 -145513083 - RMER1C Other Other -4 1338 1208 3 638 512 262 136 19 chr5 7024198 7024404 -145512855 - RMER1C Other Other -179 1163 934 3 638 918 300 42 15 chr5 7024456 7024791 -145512468 - Lx8 LINE L1 -239 7234 6891 3 638 23 0 0 0 chr5 7024805 7024828 -145512431 + AT_rich Low_complexity Low_complexity 1 23 0 3 638 308 342 12 49 chr5 7025136 7025299 -145511960 + L1MA4 LINE L1 4204 4360 -1783 3 638 195 152 0 0 chr5 7025360 7025406 -145511853 + GA-rich Low_complexity Low_complexity 1 46 0 4 638 2612 243 82 8 chr5 7025698 7026345 -145510914 + Lx7 LINE L1 6417 7111 -585 4 638 1606 52 9 19 chr5 7026374 7026590 -145510669 - MTA_Mm LTR MaLR 0 396 183 4 638 521 30 0 15 chr5 7026591 7026659 -145510600 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 638 2746 117 68 0 chr5 7026690 7027118 -145510141 - L1Md_F LINE L1 -5680 839 383 4 638 1735 136 4 8 chr5 7027118 7027385 -145509874 - L1VL1 LINE L1 -6156 266 1 4 638 1250 128 10 0 chr5 7027429 7027624 -145509635 - MTA_Mm LTR MaLR -203 197 1 4 638 832 274 67 143 chr5 7027628 7028236 -145509023 + Lx7 LINE L1 7135 7696 0 4 638 821 300 67 36 chr5 7028304 7029352 -145507907 + L1MA4 LINE L1 4688 5827 -473 3 638 889 321 62 13 chr5 7029630 7030092 -145507167 - Lx6 LINE L1 -574 6886 6208 4 638 387 0 0 0 chr5 7030143 7030186 -145507073 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 638 292 278 73 18 chr5 7030218 7030328 -145506931 - Tigger2b DNA MER2_type -599 127 12 4 638 205 366 42 0 chr5 7031524 7031595 -145505664 - MIRb SINE MIR -148 120 47 4 638 637 303 58 98 chr5 7031614 7031991 -145505268 + MTE2a LTR MaLR 8 369 -10 5 638 225 0 0 0 chr5 7032318 7032343 -145504916 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 638 373 264 207 11 chr5 7033077 7033338 -145503921 + L1MC LINE L1 4743 5054 -1092 5 638 495 60 0 0 chr5 7033346 7033413 -145503846 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 638 313 248 84 35 chr5 7033526 7033668 -145503591 + L1M3 LINE L1 5322 5470 -692 5 638 267 170 0 36 chr5 7034471 7034526 -145502733 - Lx7 LINE L1 -97 7599 7547 5 638 1138 82 0 0 chr5 7036333 7036479 -145500780 - B1_Mus1 SINE Alu -1 147 2 5 638 484 353 39 26 chr5 7037056 7037184 -145500075 + RSINE1 SINE B4 9 142 -23 5 638 471 35 0 0 chr5 7037184 7037241 -145500018 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 638 484 353 39 26 chr5 7037241 7037266 -145499993 + RSINE1 SINE B4 143 164 -1 5 638 249 297 74 21 chr5 7037741 7037930 -145499329 + L1MA7 LINE L1 4594 4792 -1351 5 638 21 0 0 0 chr5 7038947 7038968 -145498291 + AT_rich Low_complexity Low_complexity 1 21 0 6 638 4739 148 76 4 chr5 7039175 7040447 -145496812 + Lx3B LINE L1 5609 6972 -1 6 638 279 0 0 0 chr5 7040591 7040622 -145496637 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 638 229 314 96 72 chr5 7041018 7041351 -145495908 + L1MA7 LINE L1 5839 6179 -112 5 638 29 0 0 0 chr5 7041854 7041883 -145495376 + AT_rich Low_complexity Low_complexity 1 29 0 6 638 5366 172 44 14 chr5 7041905 7042999 -145494260 - L1_Mur2 LINE L1 -943 4934 3808 6 638 6958 193 13 19 chr5 7043028 7044288 -145492971 + Lx5 LINE L1 5474 6738 -312 6 638 234 0 0 0 chr5 7044288 7044314 -145492945 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 638 2797 84 29 19 chr5 7044314 7044727 -145492532 - Lx LINE L1 -12 6642 6226 6 638 6958 202 19 27 chr5 7044727 7045008 -145492251 + Lx5 LINE L1 6739 7008 -42 6 638 2237 103 9 15 chr5 7046760 7047096 -145490163 - L1_Mus2 LINE L1 -2 6564 6231 6 638 3503 117 22 53 chr5 7047134 7047722 -145489537 - Lx LINE L1 -4 6650 6081 6 638 352 169 38 25 chr5 7049480 7049559 -145487700 - Lx9 LINE L1 -197 7447 7368 7 638 231 202 118 12 chr5 7049650 7049735 -145487524 + Lx9 LINE L1 7549 7642 -2 7 638 2629 129 9 41 chr5 7049738 7050198 -145487061 - L1_Mus4 LINE L1 -7 6629 6185 7 638 357 344 182 13 chr5 7051812 7051971 -145485288 + RMER15 LTR ERVL 300 485 -90 7 638 600 128 200 0 chr5 7052684 7052809 -145484450 + L1_Mus4 LINE L1 6477 6626 -10 7 638 596 277 65 12 chr5 7053412 7053580 -145483679 + B3 SINE B2 28 204 -12 7 638 1208 56 6 0 chr5 7053821 7053982 -145483277 + (GGGAGA)n Simple_repeat Simple_repeat 5 166 0 7 638 700 287 14 43 chr5 7054395 7054606 -145482653 + B3 SINE B2 8 212 -4 7 638 3330 25 8 0 chr5 7054719 7055112 -145482147 - MTA_Mm LTR MaLR 0 396 1 7 638 612 181 18 0 chr5 7055296 7055467 -145481792 + (TG)n Simple_repeat Simple_repeat 1 174 0 7 638 269 207 11 0 chr5 7055501 7055588 -145481671 + (TG)n Simple_repeat Simple_repeat 2 89 0 7 638 21 0 0 0 chr5 7055870 7055891 -145481368 + AT_rich Low_complexity Low_complexity 1 21 0 8 638 436 340 94 26 chr5 7057340 7057635 -145479624 - ORR1E LTR MaLR -31 348 8 8 638 456 328 102 55 chr5 7059262 7059536 -145477723 + B4A SINE B4 6 292 0 8 638 199 339 0 0 chr5 7060838 7060897 -145476362 + MIRm SINE MIR 104 162 -114 8 638 4078 36 0 0 chr5 7062328 7062800 -145474459 - MT2C_Mm LTR ERVL 0 475 4 8 638 1192 284 78 30 chr5 7063267 7063568 -145473691 - L1MA8 LINE L1 -198 6093 5776 8 638 423 56 0 0 chr5 7063568 7063622 -145473637 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 638 1192 284 78 30 chr5 7063622 7063978 -145473281 - L1MA8 LINE L1 -516 5775 5405 8 638 595 322 52 44 chr5 7064073 7064440 -145472819 - ORR1D2 LTR MaLR 0 370 1 8 638 354 80 0 0 chr5 7064510 7064560 -145472699 + (TTA)n Simple_repeat Simple_repeat 2 51 0 8 638 187 333 19 0 chr5 7064967 7065021 -145472238 + L3b LINE CR1 364 418 -64 8 638 6898 143 30 7 chr5 7065171 7066773 -145470486 - Lx LINE L1 -2 6652 5000 9 638 3275 72 0 0 chr5 7066773 7067188 -145470071 - L1_Mus1 LINE L1 0 6567 6153 9 638 4480 190 45 6 chr5 7067188 7067232 -145470027 - Lx LINE L1 -884 4999 4956 9 638 26 64 0 0 chr5 7068387 7068434 -145468825 + AT_rich Low_complexity Low_complexity 1 47 0 9 638 24 53 0 0 chr5 7068563 7068601 -145468658 + AT_rich Low_complexity Low_complexity 1 38 0 9 638 881 265 75 24 chr5 7070235 7070713 -145466546 + L1_Mur3 LINE L1 4995 5499 -348 9 638 252 0 0 0 chr5 7070844 7070872 -145466387 + (TTG)n Simple_repeat Simple_repeat 2 29 0 9 638 230 329 60 13 chr5 7072403 7072554 -145464705 - RSINE1 SINE B4 -5 160 3 9 638 195 100 0 0 chr5 7072741 7072771 -145464488 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 9 638 1133 55 14 0 chr5 7072771 7072916 -145464343 - B1_Mus2 SINE Alu 0 147 1 9 638 339 151 136 36 chr5 7072963 7073073 -145464186 - Lx9 LINE L1 -1 7643 7523 9 638 28 0 0 0 chr5 7073139 7073167 -145464092 + AT_rich Low_complexity Low_complexity 1 28 0 1 638 485 302 70 41 chr5 7073346 7073388 -145463871 + Lx7 LINE L1 7268 7314 -382 1 638 210 37 0 0 chr5 7073388 7073415 -145463844 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 638 485 302 70 41 chr5 7073415 7073521 -145463738 + Lx7 LINE L1 7315 7426 -270 1 638 366 42 0 0 chr5 7073521 7073569 -145463690 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 638 485 302 70 41 chr5 7073569 7073836 -145463423 + Lx7 LINE L1 7427 7695 -1 1 638 26 30 0 0 chr5 7073874 7073907 -145463352 + AT_rich Low_complexity Low_complexity 1 33 0 1 638 2309 269 64 2 chr5 7073986 7074568 -145462691 + Lx6 LINE L1 6816 7433 -27 1 638 47 19 0 0 chr5 7074708 7074762 -145462497 + AT_rich Low_complexity Low_complexity 1 54 0 1 638 23 54 0 0 chr5 7074792 7074829 -145462430 + AT_rich Low_complexity Low_complexity 1 37 0 1 638 702 299 71 10 chr5 7075375 7075571 -145461688 + B3 SINE B2 9 216 0 1 638 34 42 0 0 chr5 7075573 7075621 -145461638 + AT_rich Low_complexity Low_complexity 1 48 0 1 638 706 147 6 84 chr5 7075621 7075799 -145461460 + Lx3C LINE L1 6805 6968 -8 1 638 250 333 67 42 chr5 7075930 7076049 -145461210 - MER5A1 DNA MER1_type -37 129 8 1 638 268 377 19 6 chr5 7076474 7076634 -145460625 + MLT1B LTR MaLR 6 167 -223 1 79 6109 224 33 140 chr5 7076844 7078290 -145458969 + Lx6 LINE L1 3781 5246 -2214 1 639 807 210 172 40 chr5 7078290 7078612 -145458647 + ORR1A4 LTR MaLR 1 329 0 1 639 6109 224 33 140 chr5 7078612 7079645 -145457614 + Lx6 LINE L1 5247 6295 -1165 1 639 659 251 16 21 chr5 7079612 7079803 -145457456 + Lx6 LINE L1 7219 7408 -52 1 639 25 31 0 0 chr5 7080183 7080215 -145457044 + AT_rich Low_complexity Low_complexity 1 32 0 1 639 612 261 59 83 chr5 7081317 7081423 -145455836 + Lx7 LINE L1 7252 7359 -337 1 639 300 53 0 0 chr5 7081423 7081461 -145455798 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 639 612 261 59 83 chr5 7081461 7081810 -145455449 + Lx7 LINE L1 7360 7696 0 1 639 21 82 0 0 chr5 7081816 7081865 -145455394 + AT_rich Low_complexity Low_complexity 1 49 0 1 639 3015 41 5 53 chr5 7082645 7082881 -145454378 + MTA_Mm LTR MaLR 1 219 -177 1 639 5745 53 7 26 chr5 7082881 7083649 -145453610 + L1Md_F2 LINE L1 5830 6582 0 1 639 3015 41 5 53 chr5 7083649 7083828 -145453431 + MTA_Mm LTR MaLR 220 396 0 1 639 1625 26 0 20 chr5 7084559 7084755 -145452504 - B2_Mm1t SINE B2 0 193 2 1 639 35339 35 0 0 chr5 7085469 7091049 -145446210 + L1Md_T LINE L1 1 5589 -297 1 639 8941 7 0 0 chr5 7091049 7092045 -145445214 + L1Md_T LINE L1 5590 6585 0 1 639 320 284 12 0 chr5 7092051 7092132 -145445127 + L1MEg LINE L1 1878 1959 -4125 1 639 848 163 0 0 chr5 7092139 7092274 -145444985 + B1_Mus1 SINE Alu 4 138 -10 1 639 344 22 22 0 chr5 7092274 7092319 -145444940 + (CAA)n Simple_repeat Simple_repeat 2 47 0 1 639 229 19 113 0 chr5 7092983 7093036 -145444223 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1 639 963 55 8 0 chr5 7093037 7093164 -145444095 - B1_Mus1 SINE Alu -1 147 20 1 639 423 163 0 140 chr5 7093070 7093177 -145444082 - MT2B LTR ERVL -337 264 173 1 639 6380 62 4 7 chr5 7093338 7094169 -145443090 + L1Md_F2 LINE L1 5743 6570 -12 1 639 15193 196 33 56 chr5 7094197 7100367 -145436892 + Lx LINE L1 554 6557 -97 1 639 26 30 0 0 chr5 7100589 7100622 -145436637 + AT_rich Low_complexity Low_complexity 1 33 0 1 639 719 329 25 17 chr5 7101211 7101449 -145435810 + MTE2b LTR MaLR 1 240 -139 1 639 2110 144 152 0 chr5 7101449 7101845 -145435414 + Lx2 LINE L1 6542 6997 0 1 639 284 348 74 37 chr5 7103493 7103735 -145433524 - L1M2 LINE L1 -552 5631 5381 1 639 687 298 84 19 chr5 7103737 7104045 -145433214 - L1_Rod LINE L1 -99 5748 5421 1 639 238 232 11 68 chr5 7104193 7104281 -145432978 - Lx9 LINE L1 -179 7465 7383 1 639 1301 71 12 0 chr5 7104281 7104449 -145432810 + L1_Mus3 LINE L1 6060 6229 -409 1 639 1433 117 152 14 chr5 7104441 7104710 -145432549 + L1_Mus3 LINE L1 6343 6626 -12 1 639 4300 30 0 6 chr5 7104718 7105228 -145432031 + L1Md_F2 LINE L1 6074 6580 -2 1 639 501 273 44 26 chr5 7105375 7105570 -145431689 - L1M2 LINE L1 -773 5524 5288 1 639 471 272 43 10 chr5 7105579 7105713 -145431546 - B1_Mur4 SINE Alu 0 147 10 1 639 604 316 72 14 chr5 7105744 7106104 -145431155 - L1M2 LINE L1 -860 5283 4903 1 639 1792 137 6 4 chr5 7106179 7106475 -145430784 - L1_Mus1 LINE L1 -236 6331 6081 1 639 551 252 126 5 chr5 7106474 7106689 -145430570 - L1_Mur3 LINE L1 -1374 4506 4266 1 639 677 275 117 33 chr5 7106798 7107352 -145429907 - L1_Mur3 LINE L1 -2479 3664 3040 1 639 1099 191 8 25 chr5 7107423 7107659 -145429600 - Lx2 LINE L1 -1 6996 6765 1 639 2361 104 3 0 chr5 7107648 7107976 -145429283 - Lx2 LINE L1 -352 6645 6317 1 639 959 335 107 19 chr5 7108096 7109445 -145427814 - L1_Mur3 LINE L1 -3130 2750 1283 1 639 23 0 0 0 chr5 7110145 7110168 -145427091 + AT_rich Low_complexity Low_complexity 1 23 0 1 639 3015 216 148 1 chr5 7110172 7110868 -145426391 - Lx2B LINE L1 -5 6995 6198 1 639 180 0 0 0 chr5 7110969 7110989 -145426270 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 639 459 35 0 0 chr5 7110989 7111045 -145426214 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 639 389 246 58 39 chr5 7111172 7111318 -145425941 + MTE2b LTR MaLR 256 406 -13 1 639 22 0 0 0 chr5 7111741 7111763 -145425496 + AT_rich Low_complexity Low_complexity 1 22 0 1 639 2556 41 0 0 chr5 7112139 7112453 -145424806 + L1Md_T LINE L1 6268 6581 -1 1 639 25 0 0 0 chr5 7112902 7112927 -145424332 + AT_rich Low_complexity Low_complexity 1 25 0 1 639 27 0 0 0 chr5 7113713 7113740 -145423519 + AT_rich Low_complexity Low_complexity 1 27 0 1 639 23 0 0 0 chr5 7113784 7113807 -145423452 + AT_rich Low_complexity Low_complexity 1 23 0 1 639 3015 159 8 8 chr5 7114418 7114911 -145422348 + Lx2 LINE L1 6332 6824 -173 1 639 258 343 38 9 chr5 7116098 7116204 -145421055 - PB1D9 SINE Alu -2 118 10 1 639 24 0 0 0 chr5 7116397 7116421 -145420838 + AT_rich Low_complexity Low_complexity 1 24 0 1 639 304 345 101 35 chr5 7117073 7117331 -145419928 - L1MC2 LINE L1 -166 6178 5904 1 639 6241 121 45 38 chr5 7117537 7118343 -145418916 - Lx LINE L1 0 6654 5835 1 639 1039 99 0 0 chr5 7118343 7118484 -145418775 - B1_Mus1 SINE Alu -6 142 2 1 639 11066 178 19 24 chr5 7118484 7120711 -145416548 - L1_Mm LINE L1 -42 5841 3625 1 639 378 0 0 0 chr5 7120740 7120782 -145416477 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 639 227 255 234 0 chr5 7120797 7120891 -145416368 - Lx9 LINE L1 -206 7438 7323 1 639 2011 110 24 59 chr5 7120970 7121307 -145415952 + ORR1A2 LTR MaLR 3 327 0 1 639 233 102 41 0 chr5 7121433 7121482 -145415777 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 639 1615 103 126 0 chr5 7121496 7121758 -145415501 + L1_Mus3 LINE L1 6329 6623 -15 1 639 204 146 0 24 chr5 7121768 7121810 -145415449 + A-rich Low_complexity Low_complexity 2 42 0 1 639 1261 66 27 11 chr5 7121815 7121998 -145415261 + B2_Mm2 SINE B2 2 187 -8 1 639 602 255 7 7 chr5 7122141 7122279 -145414980 - B1_Mus1 SINE Alu -2 146 9 1 639 335 303 122 40 chr5 7122582 7122878 -145414381 - L1MC LINE L1 -1733 4413 4094 1 639 183 80 0 0 chr5 7122918 7122943 -145414316 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 639 407 216 8 33 chr5 7122960 7123080 -145414179 - Lx4B LINE L1 -34 7024 6908 1 639 270 256 12 0 chr5 7123114 7123196 -145414063 - L1MC LINE L1 -2929 3217 3135 1 639 1238 263 49 31 chr5 7123538 7123986 -145413273 + Lx9 LINE L1 7065 7520 -124 1 639 205 145 70 28 chr5 7123986 7124057 -145413202 + (TATAA)n Simple_repeat Simple_repeat 1 74 0 1 639 298 258 49 25 chr5 7124066 7124229 -145413030 + Lx9 LINE L1 7477 7643 -1 1 639 24 0 0 0 chr5 7125105 7125129 -145412130 + AT_rich Low_complexity Low_complexity 1 24 0 1 639 219 279 0 14 chr5 7125265 7125334 -145411925 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 639 21 71 0 0 chr5 7126019 7126061 -145411198 + AT_rich Low_complexity Low_complexity 1 42 0 1 639 226 276 27 54 chr5 7127018 7127129 -145410130 + RLTR13B4 LTR ERVK 160 267 -536 1 639 309 209 15 0 chr5 7127325 7127392 -145409867 + L1MD LINE L1 3085 3152 -2994 1 639 383 311 93 57 chr5 7127364 7127456 -145409803 + L1M4 LINE L1 3326 3427 -2719 1 639 309 287 79 0 chr5 7127456 7127557 -145409702 + PB1D10 SINE Alu 1 109 -8 1 639 383 311 93 57 chr5 7127557 7127733 -145409526 + L1M4 LINE L1 3428 3605 -2541 1 639 2308 140 55 7 chr5 7127733 7128136 -145409123 + Lx2 LINE L1 6574 6995 -2 1 639 383 311 93 57 chr5 7128136 7128285 -145408974 + L1M4 LINE L1 3606 3758 -2388 1 639 850 108 6 17 chr5 7128330 7128508 -145408751 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 1 639 270 0 0 0 chr5 7129232 7129262 -145407997 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 639 247 280 66 25 chr5 7129786 7129907 -145407352 - L1ME2 LINE L1 -16 6148 6023 1 639 326 400 7 0 chr5 7130014 7130149 -145407110 + RSINE1 SINE B4 8 143 -22 1 639 185 122 0 47 chr5 7130182 7130225 -145407034 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1 639 212 0 36 0 chr5 7130247 7130275 -145406984 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1 639 245 240 19 48 chr5 7130447 7130552 -145406707 + A-rich Low_complexity Low_complexity 4 105 0 1 639 352 222 0 40 chr5 7130558 7130633 -145406626 - Lx7 LINE L1 -450 7246 7175 1 639 216 0 0 0 chr5 7130633 7130657 -145406602 + (T)n Simple_repeat Simple_repeat 1 24 0 1 639 347 65 0 0 chr5 7130657 7130703 -145406556 - RLTR13D5 LTR ERVK -115 908 863 1 639 7141 39 0 0 chr5 7130703 7131570 -145405689 - L1Md_T LINE L1 -4 6578 5734 1 639 25924 109 24 3 chr5 7131601 7136288 -145400971 - L1_Mus1 LINE L1 -20 6547 1753 1 639 8633 64 40 1 chr5 7136293 7138141 -145399118 - L1Md_F2 LINE L1 0 6582 4646 1 639 1745 87 8 4 chr5 7138142 7138386 -145398873 + L1_Mus1 LINE L1 6322 6566 -1 1 639 992 278 16 8 chr5 7138823 7139066 -145398193 + MTD LTR MaLR 146 390 -29 1 639 293 0 0 26 chr5 7140467 7140505 -145396754 + (GGGGA)n Simple_repeat Simple_repeat 5 41 0 1 639 756 0 0 0 chr5 7140971 7141055 -145396204 + (TTC)n Simple_repeat Simple_repeat 2 85 0 1 639 1034 129 16 0 chr5 7141085 7141271 -145395988 - L1Md_F2 LINE L1 0 6582 6394 2 639 1802 161 29 11 chr5 7141897 7142248 -145395011 + RLTR15 LTR ERVK 3 359 0 2 639 2450 64 61 0 chr5 7142381 7142707 -145394552 + ORR1A1 LTR MaLR 1 346 0 2 639 514 321 22 49 chr5 7143492 7143718 -145393541 - MLT1B LTR MaLR -122 268 49 2 639 547 306 14 7 chr5 7143831 7143969 -145393290 - RSINE1 SINE B4 -2 163 25 2 639 990 344 76 84 chr5 7144183 7144668 -145392591 + Lx8 LINE L1 6590 7040 -433 2 639 636 12 12 0 chr5 7144668 7144752 -145392507 + L1Md_T LINE L1 6498 6582 0 2 639 990 344 76 84 chr5 7144752 7145156 -145392103 + Lx8 LINE L1 7041 7472 -1 2 639 23286 70 3 18 chr5 7145786 7149634 -145387625 + L1Md_A LINE L1 422 4204 -1679 2 639 21 57 0 0 chr5 7149882 7149917 -145387342 + AT_rich Low_complexity Low_complexity 1 35 0 2 639 200 139 28 0 chr5 7151293 7151329 -145385930 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 639 33 73 0 0 chr5 7151344 7151412 -145385847 + AT_rich Low_complexity Low_complexity 1 68 0 2 639 486 281 353 8 chr5 7151778 7152027 -145385232 + ORR1D2 LTR MaLR 33 367 -3 2 639 2062 82 25 0 chr5 7153726 7154008 -145383251 - L1Md_F2 LINE L1 -417 6165 5877 2 639 2860 80 12 14 chr5 7154010 7154427 -145382832 + L1Md_F2 LINE L1 6167 6582 0 2 639 207 69 0 0 chr5 7155136 7155165 -145382094 + (T)n Simple_repeat Simple_repeat 1 29 0 2 639 200 59 0 29 chr5 7155337 7155372 -145381887 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 2 639 405 0 0 0 chr5 7155480 7155525 -145381734 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 639 244 261 106 112 chr5 7155900 7156060 -145381199 + RMER15 LTR ERVL 2 160 -415 2 639 23 78 0 0 chr5 7156680 7156731 -145380528 + AT_rich Low_complexity Low_complexity 1 51 0 2 639 324 233 73 118 chr5 7157495 7157631 -145379628 - Lx8 LINE L1 -519 6954 6825 2 639 229 244 15 129 chr5 7158199 7158331 -145378928 - Charlie10 DNA MER1_type -591 2231 2115 2 639 220 111 0 62 chr5 7158367 7158415 -145378844 + T-rich Low_complexity Low_complexity 3 47 0 2 639 1338 324 91 34 chr5 7158415 7158779 -145378480 - Lx8 LINE L1 -143 7330 6946 2 639 477 0 0 0 chr5 7158779 7158832 -145378427 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 639 1338 324 91 34 chr5 7158832 7159151 -145378108 - Lx8 LINE L1 -528 6945 6609 2 639 696 280 56 14 chr5 7159222 7159436 -145377823 - Lx8 LINE L1 -982 6491 6269 2 639 279 0 0 0 chr5 7159440 7159471 -145377788 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 639 385 206 21 0 chr5 7159670 7159767 -145377492 + Lx2 LINE L1 6899 6997 0 2 639 292 304 37 62 chr5 7160216 7160678 -145376581 + L1ME3 LINE L1 4939 5401 -745 2 639 513 164 0 76 chr5 7160999 7161118 -145376141 + RMER3D-int LTR ERVK 2731 2840 -2 2 639 1981 144 311 5 chr5 7161120 7161567 -145375692 + RLTR31A_Mm LTR ERVK 1 584 0 2 639 5127 131 32 9 chr5 7161567 7162421 -145374838 + Lx3A LINE L1 6103 6975 -6 2 639 274 286 67 31 chr5 7162569 7162699 -145374560 + L1ME3 LINE L1 6007 6144 -20 2 639 22 0 0 0 chr5 7164162 7164184 -145373075 + AT_rich Low_complexity Low_complexity 1 22 0 2 639 303 104 0 0 chr5 7165110 7165158 -145372101 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 639 2428 114 0 8 chr5 7166255 7166626 -145370633 + Lx3B LINE L1 6605 6972 -1 2 639 240 163 0 0 chr5 7166640 7166683 -145370576 + GA-rich Low_complexity Low_complexity 2 44 0 2 639 263 361 40 62 chr5 7166710 7166887 -145370372 + MIR SINE MIR 18 190 -72 2 639 225 0 0 0 chr5 7167590 7167615 -145369644 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 639 28 29 0 0 chr5 7168392 7168427 -145368832 + AT_rich Low_complexity Low_complexity 1 35 0 2 639 28 0 0 0 chr5 7168801 7168829 -145368430 + AT_rich Low_complexity Low_complexity 1 28 0 2 639 270 330 25 57 chr5 7169536 7169658 -145367601 + B4A SINE B4 12 129 -163 2 639 1138 197 133 68 chr5 7169795 7170133 -145367126 + ORR1C2 LTR MaLR 25 384 0 2 639 208 111 67 0 chr5 7170243 7170288 -145366971 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 639 1141 75 0 0 chr5 7170497 7170644 -145366615 + B1_Mus1 SINE Alu 2 148 0 2 639 196 120 20 20 chr5 7170644 7170695 -145366564 + A-rich Low_complexity Low_complexity 4 54 0 2 639 261 0 0 0 chr5 7171358 7171387 -145365872 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 639 4721 74 9 6 chr5 7171424 7172065 -145365194 - L1Md_F2 LINE L1 -2 6580 5938 2 639 317 194 47 84 chr5 7172477 7172584 -145364675 - Lx7 LINE L1 -742 6954 6841 2 639 493 154 39 0 chr5 7172584 7172714 -145364545 + CT-rich Low_complexity Low_complexity 4 138 0 2 639 363 44 0 0 chr5 7172717 7172762 -145364497 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 639 468 0 0 0 chr5 7172762 7172813 -145364446 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 639 242 315 88 36 chr5 7174197 7174503 -145362756 + L1M2 LINE L1 4957 5278 -865 2 639 233 167 19 0 chr5 7174625 7174679 -145362580 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 639 715 168 0 0 chr5 7174902 7175021 -145362238 + L1_Mus3 LINE L1 5054 5172 -711 2 639 3529 20 0 0 chr5 7175025 7175421 -145361838 - MTA_Mm LTR MaLR 0 396 1 2 639 6779 27 2 0 chr5 7175421 7176247 -145361012 - MTA_Mm-int LTR MaLR 0 1098 271 2 639 6413 109 86 1 chr5 7176248 7177617 -145359642 + L1_Mus3 LINE L1 5129 6630 -8 2 639 183 129 0 0 chr5 7177660 7177691 -145359568 + (T)n Simple_repeat Simple_repeat 1 31 0 2 639 218 186 0 0 chr5 7180651 7180694 -145356565 + GA-rich Low_complexity Low_complexity 2 44 0 2 639 236 362 127 22 chr5 7182010 7182191 -145355068 - MLT1D LTR MaLR 0 505 306 2 639 538 307 36 26 chr5 7182246 7182440 -145354819 - MLT1D LTR MaLR -298 207 12 2 639 474 307 28 134 chr5 7182441 7182761 -145354498 + B4A SINE B4 1 286 -6 2 639 2865 83 38 0 chr5 7183635 7184054 -145353205 + Lx3_Mus LINE L1 6575 7009 0 2 639 409 302 91 17 chr5 7184701 7184997 -145352262 - L1MC2 LINE L1 -296 6048 5731 2 639 402 57 0 0 chr5 7186427 7186480 -145350779 + (A)n Simple_repeat Simple_repeat 1 53 0 2 639 312 279 98 65 chr5 7186791 7187006 -145350253 + L1MEe LINE L1 571 792 -4062 2 639 23 0 0 0 chr5 7187142 7187165 -145350094 + AT_rich Low_complexity Low_complexity 1 23 0 2 639 659 62 0 0 chr5 7187313 7187393 -145349866 + L1Md_F3 LINE L1 5507 5586 -297 2 639 7789 47 10 2 chr5 7187393 7188369 -145348890 + L1Md_F3 LINE L1 5587 6570 -14 2 639 1215 156 84 0 chr5 7189034 7189271 -145347988 - Lx2 LINE L1 -2 6995 6739 2 639 2072 143 3 0 chr5 7189272 7189601 -145347658 + Lx2 LINE L1 6219 6548 -449 2 639 21 36 0 0 chr5 7189863 7189891 -145347368 + AT_rich Low_complexity Low_complexity 1 28 0 2 639 455 185 43 22 chr5 7190628 7190766 -145346493 - Lx9 LINE L1 -1 7643 7503 2 639 359 306 81 87 chr5 7191169 7191341 -145345918 - MLT2B2 LTR ERVL -192 328 158 2 639 770 241 82 13 chr5 7191341 7191572 -145345687 + ORR1D1 LTR MaLR 1 247 -127 2 639 522 93 0 0 chr5 7191572 7191658 -145345601 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 639 689 95 0 0 chr5 7191658 7191753 -145345506 - B1_Mus2 SINE Alu -6 141 47 2 639 307 235 167 86 chr5 7191683 7191869 -145345390 + ORR1A1 LTR MaLR 119 319 -27 2 639 258 172 86 0 chr5 7191884 7191942 -145345317 + ORR1A1 LTR MaLR 310 372 -2 2 639 440 278 118 0 chr5 7191945 7192089 -145345170 - MLT2B2 LTR ERVL -354 161 1 2 639 21 0 0 0 chr5 7193030 7193051 -145344208 + AT_rich Low_complexity Low_complexity 1 21 0 2 639 3541 111 21 34 chr5 7194884 7195452 -145341807 - L1_Mus4 LINE L1 -5 6631 6071 2 639 1245 224 73 10 chr5 7195589 7195877 -145341382 - MTC LTR MaLR 0 421 116 2 639 4962 187 31 16 chr5 7195881 7196912 -145340347 + Lx2 LINE L1 5952 6997 0 2 639 768 11 0 0 chr5 7196950 7197039 -145340220 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 2 639 401 266 31 24 chr5 7197099 7197226 -145340033 - Lx6 LINE L1 -21 7439 7312 2 639 1167 121 16 10 chr5 7197395 7197588 -145339671 + B2_Mm2 SINE B2 2 195 0 2 639 498 57 0 0 chr5 7198256 7198326 -145338933 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 639 469 261 21 56 chr5 7198331 7198473 -145338786 - B1_Mm SINE Alu -5 142 6 2 639 240 186 0 0 chr5 7198583 7198642 -145338617 + T-rich Low_complexity Low_complexity 1 59 0 2 639 931 104 20 14 chr5 7198643 7198789 -145338470 - B1_Mus1 SINE Alu -1 147 1 2 639 24 32 0 0 chr5 7199283 7199314 -145337945 + AT_rich Low_complexity Low_complexity 1 31 0 2 639 233 246 12 4 chr5 7199458 7199519 -145337740 - PB1D10 SINE Alu -74 75 13 2 639 31 76 0 0 chr5 7199589 7199655 -145337604 + AT_rich Low_complexity Low_complexity 1 66 0 2 639 37809 41 1 2 chr5 7200216 7206380 -145330879 - L1Md_T LINE L1 0 6585 335 2 639 1330 216 52 15 chr5 7206542 7206867 -145330392 + RMER6C LTR ERVK 1 337 -353 2 639 1280 112 0 11 chr5 7206870 7207060 -145330199 + L1_Mus2 LINE L1 6156 6343 -223 2 639 1693 196 3 0 chr5 7207107 7207438 -145329821 - Lx2B LINE L1 -1057 5943 5612 2 639 4206 199 87 19 chr5 7207440 7208459 -145328800 + Lx2B LINE L1 5909 6997 -3 2 639 702 316 66 5 chr5 7208573 7208786 -145328473 - RMER1A Other Other -721 309 84 2 640 916 262 60 111 chr5 7209122 7209508 -145327751 + ORR1D2 LTR MaLR 5 370 0 2 640 1241 290 56 35 chr5 7209532 7209583 -145327676 - MTD LTR MaLR -18 401 353 2 640 197 33 0 32 chr5 7209583 7209614 -145327645 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 640 1241 290 56 35 chr5 7209614 7209937 -145327322 - MTD LTR MaLR -67 352 19 2 640 246 167 0 0 chr5 7209937 7209997 -145327262 + CT-rich Low_complexity Low_complexity 1 60 0 2 640 28 29 0 0 chr5 7210166 7210201 -145327058 + AT_rich Low_complexity Low_complexity 1 35 0 2 640 441 116 0 0 chr5 7210269 7210338 -145326921 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 640 3869 97 41 16 chr5 7210982 7211007 -145326252 - MusHAL1 LINE L1 -1237 1475 1443 2 640 279 0 0 0 chr5 7211007 7211038 -145326221 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 640 3869 97 41 16 chr5 7211038 7211653 -145325606 - MusHAL1 LINE L1 -1270 1442 820 2 640 1634 97 0 0 chr5 7211649 7211877 -145325382 + Lx LINE L1 5862 6089 -565 2 640 635 126 0 40 chr5 7211877 7212001 -145325258 + Lx LINE L1 6535 6653 -1 2 640 288 231 0 0 chr5 7212705 7212783 -145324476 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 640 21 0 0 0 chr5 7212855 7212876 -145324383 + AT_rich Low_complexity Low_complexity 1 21 0 2 640 198 0 0 0 chr5 7213456 7213478 -145323781 + (A)n Simple_repeat Simple_repeat 1 22 0 3 640 233 29 29 0 chr5 7213568 7213602 -145323657 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 640 378 0 0 0 chr5 7214496 7214538 -145322721 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 640 450 0 0 0 chr5 7215532 7215582 -145321677 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 640 874 68 0 0 chr5 7216283 7216400 -145320859 - L1_Mus3 LINE L1 -827 5811 5695 3 640 541 42 0 0 chr5 7216400 7216471 -145320788 + L1_Mus1 LINE L1 6497 6567 0 3 640 195 42 0 0 chr5 7218203 7218227 -145319032 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 640 242 250 0 11 chr5 7218223 7218312 -145318947 + (TA)n Simple_repeat Simple_repeat 1 88 0 3 640 303 349 80 75 chr5 7218461 7218848 -145318411 - MT2A LTR ERVL -142 391 3 3 640 22 80 0 0 chr5 7218891 7218941 -145318318 + AT_rich Low_complexity Low_complexity 1 50 0 3 640 384 344 108 16 chr5 7219019 7219270 -145317989 + B4A SINE B4 1 274 -18 3 640 363 44 0 0 chr5 7219278 7219323 -145317936 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 640 183 235 0 0 chr5 7219365 7219416 -145317843 + (CATA)n Simple_repeat Simple_repeat 3 53 0 3 640 28 71 0 0 chr5 7219735 7219791 -145317468 + AT_rich Low_complexity Low_complexity 1 56 0 3 640 27 0 0 0 chr5 7220160 7220187 -145317072 + AT_rich Low_complexity Low_complexity 1 27 0 3 640 351 261 51 51 chr5 7221114 7221231 -145316028 - B1F SINE Alu 0 149 33 3 640 446 197 0 8 chr5 7221571 7221699 -145315560 + (CA)n Simple_repeat Simple_repeat 1 127 0 3 640 874 121 38 0 chr5 7222104 7222236 -145315023 - B1_Mus1 SINE Alu 0 148 12 3 640 492 245 138 50 chr5 7222149 7222308 -145314951 - MT2B LTR ERVL -344 257 85 3 640 2599 172 44 92 chr5 7224051 7224691 -145312568 - RMER19C LTR ERVK -2 609 1 3 640 4440 94 3 10 chr5 7224816 7225439 -145311820 - L1_Mus3 LINE L1 0 6638 6020 3 640 1890 70 16 0 chr5 7225440 7225697 -145311562 + L1_Mus3 LINE L1 5775 6035 -603 3 640 283 270 56 0 chr5 7226136 7226225 -145311034 - L1MEc LINE L1 -4616 1784 1691 3 640 1573 225 3 9 chr5 7226532 7226882 -145310377 - Lx5 LINE L1 -1040 6010 5663 3 640 1144 281 53 21 chr5 7226880 7227299 -145309960 + Lx6 LINE L1 6495 7292 -168 3 640 489 129 0 0 chr5 7227308 7227401 -145309858 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 3 640 224 71 48 0 chr5 7227423 7227465 -145309794 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 3 640 764 276 45 10 chr5 7227496 7227791 -145309468 - Lx6 LINE L1 -301 7159 6796 3 640 483 18 0 0 chr5 7227805 7227861 -145309398 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 640 256 236 9 45 chr5 7227865 7227976 -145309283 + Lx6 LINE L1 7328 7434 -26 3 640 261 0 0 0 chr5 7227993 7228022 -145309237 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 3 640 482 350 14 48 chr5 7228384 7228594 -145308665 - B4A SINE B4 -22 270 68 3 640 301 136 106 0 chr5 7228653 7228719 -145308540 + Lx9 LINE L1 7563 7635 -9 3 640 32 26 0 0 chr5 7228856 7228895 -145308364 + AT_rich Low_complexity Low_complexity 1 39 0 3 640 194 81 0 26 chr5 7228898 7228936 -145308323 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 3 640 343 176 29 17 chr5 7228927 7228947 -145308312 + (CAGAGA)n Simple_repeat Simple_repeat 2 21 0 3 640 393 75 0 0 chr5 7228947 7229000 -145308259 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 3 640 343 176 29 17 chr5 7229000 7229152 -145308107 + (CAGAGA)n Simple_repeat Simple_repeat 4 158 0 3 640 365 347 50 15 chr5 7230422 7230621 -145306638 + L3b LINE CR1 15 220 -262 3 640 414 0 0 0 chr5 7231183 7231229 -145306030 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 640 212 341 66 0 chr5 7231231 7231322 -145305937 - B1F SINE Alu -41 108 12 3 640 602 91 70 0 chr5 7231515 7231658 -145305601 + CT-rich Low_complexity Low_complexity 1 153 0 3 640 402 137 38 32 chr5 7232529 7232687 -145304572 + (TAGA)n Simple_repeat Simple_repeat 3 161 0 3 640 449 331 38 60 chr5 7232747 7233119 -145304140 - MTEb LTR MaLR 0 379 10 3 640 363 154 0 0 chr5 7234197 7234262 -145302997 + GA-rich Low_complexity Low_complexity 2 66 0 3 640 651 26 0 0 chr5 7234541 7234618 -145302641 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 640 242 185 0 30 chr5 7234661 7234728 -145302531 + (CATA)n Simple_repeat Simple_repeat 1 65 0 3 640 300 209 108 9 chr5 7235587 7235698 -145301561 - Lx6 LINE L1 -10 7450 7329 3 640 592 25 24 12 chr5 7235699 7235781 -145301478 + (TTTTC)n Simple_repeat Simple_repeat 2 84 0 3 640 4104 54 2 2 chr5 7235787 7236304 -145300955 - L1Md_F2 LINE L1 -14 6568 6052 3 640 3152 82 5 2 chr5 7236304 7236730 -145300529 + L1Md_F2 LINE L1 5616 6042 -540 3 640 1795 149 126 13 chr5 7236747 7237127 -145300132 + Lx LINE L1 6231 6653 -1 3 640 243 0 0 0 chr5 7237212 7237239 -145300020 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 640 433 317 43 0 chr5 7237316 7237477 -145299782 + Lx6 LINE L1 7199 7366 -94 3 640 674 175 99 88 chr5 7237526 7237708 -145299551 - Lx6 LINE L1 -419 7041 6858 3 640 584 215 255 0 chr5 7237743 7237892 -145299367 + Lx6 LINE L1 6659 6845 -615 3 640 722 247 147 21 chr5 7237892 7238082 -145299177 - MTE2b LTR MaLR -59 320 107 3 640 215 31 0 30 chr5 7238084 7238117 -145299142 + (TCCA)n Simple_repeat Simple_repeat 3 34 0 3 640 1853 226 119 20 chr5 7238138 7238408 -145298851 - RLTR20B2 LTR ERVK -4 556 267 3 640 297 0 0 0 chr5 7238408 7238441 -145298818 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 640 1853 226 119 20 chr5 7238441 7238676 -145298583 - RLTR20B2 LTR ERVK -294 266 3 3 640 220 281 156 11 chr5 7239022 7239112 -145298147 - PB1D10 SINE Alu -5 112 10 3 640 243 0 0 0 chr5 7239224 7239251 -145298008 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 640 600 329 75 79 chr5 7239810 7240216 -145297043 + MER44B DNA MER2_type 5 405 -145 3 640 305 62 21 0 chr5 7240216 7240264 -145296995 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 640 600 329 75 79 chr5 7240264 7240375 -145296884 + MER44B DNA MER2_type 406 520 -30 3 640 394 252 72 16 chr5 7241478 7241603 -145295656 - MER77 LTR ERVL -6 601 470 3 640 250 267 33 11 chr5 7241837 7241928 -145295331 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 3 640 34 24 0 0 chr5 7242143 7242184 -145295075 + AT_rich Low_complexity Low_complexity 1 41 0 3 640 21 0 0 0 chr5 7243470 7243491 -145293768 + AT_rich Low_complexity Low_complexity 1 21 0 3 640 7000 81 8 16 chr5 7244896 7246519 -145290740 - L1Md_F2 LINE L1 -15 6567 4967 3 640 17816 84 6 4 chr5 7246513 7246788 -145290471 - L1Md_F2 LINE L1 -2122 3761 3487 3 640 288 0 0 0 chr5 7246788 7246820 -145290439 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 640 17816 119 52 13 chr5 7246820 7250020 -145287239 - L1Md_F2 LINE L1 -2397 3486 208 3 640 883 306 80 23 chr5 7250036 7250561 -145286698 - Charlie1a DNA MER1_type -1 1454 900 3 640 24 53 0 0 chr5 7251350 7251388 -145285871 + AT_rich Low_complexity Low_complexity 1 38 0 3 640 261 406 46 0 chr5 7252718 7252979 -145284280 + B4A SINE B4 2 274 -18 3 640 2858 52 0 0 chr5 7253234 7253580 -145283679 - L1Md_F2 LINE L1 -74 5809 5464 3 640 6439 37 0 0 chr5 7253576 7254338 -145282921 + L1Md_F2 LINE L1 5797 6558 -24 3 640 279 0 0 0 chr5 7254338 7254369 -145282890 + (TAA)n Simple_repeat Simple_repeat 3 33 0 3 640 6727 17 0 0 chr5 7254857 7255622 -145281637 + L1Md_A LINE L1 5818 6582 0 3 640 957 176 136 0 chr5 7255829 7256028 -145281231 - URR1A DNA MER1_type 0 226 1 3 640 3415 65 0 0 chr5 7256060 7256494 -145280765 + L1Md_F2 LINE L1 6137 6570 -12 3 640 4500 50 7 2 chr5 7257088 7257655 -145279604 - L1Md_F2 LINE L1 0 6582 6013 3 640 1125 77 14 0 chr5 7257780 7257923 -145279336 + B1_Mus1 SINE Alu 3 147 -1 3 640 1002 62 0 0 chr5 7257948 7258078 -145279181 + (GGAGA)n Simple_repeat Simple_repeat 2 131 0 3 640 3703 259 53 62 chr5 7258368 7258513 -145278746 + Lx9 LINE L1 6380 6518 -1126 3 640 1734 214 71 0 chr5 7258513 7258877 -145278382 + ORR1B1 LTR MaLR 1 390 -4 3 640 3703 259 53 62 chr5 7258877 7260005 -145277254 + Lx9 LINE L1 6519 7642 -2 3 640 516 244 5 188 chr5 7260018 7260220 -145277039 - MT2A LTR ERVL -368 165 1 3 640 349 292 73 0 chr5 7260621 7260717 -145276542 - B2_Mm2 SINE B2 -87 108 6 3 640 244 307 78 19 chr5 7260861 7260964 -145276295 - PB1D10 SINE Alu -8 109 1 3 640 2650 101 28 8 chr5 7260990 7261389 -145275870 - MTB_Mm LTR MaLR 0 407 1 3 640 628 181 30 48 chr5 7261861 7262029 -145275230 + Lx7 LINE L1 4610 4774 -1106 3 640 6331 224 65 11 chr5 7262026 7264210 -145273049 + Lx7 LINE L1 5060 7367 -329 3 640 411 83 0 0 chr5 7264863 7264923 -145272336 + (T)n Simple_repeat Simple_repeat 1 60 0 3 640 183 270 95 0 chr5 7265298 7265361 -145271898 - L3 LINE CR1 -6 4483 4415 3 640 336 148 0 0 chr5 7265527 7265588 -145271671 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 3 640 1135 280 26 42 chr5 7266053 7266508 -145270751 - L1_Mur3 LINE L1 -101 5779 5332 3 640 7007 133 21 16 chr5 7266505 7268172 -145269087 - L1_Mus4 LINE L1 -6 6630 4961 3 640 467 175 71 0 chr5 7268179 7268305 -145268954 - Lx9 LINE L1 -1 7643 7509 3 640 466 238 35 7 chr5 7268358 7268502 -145268757 + Lx9 LINE L1 7262 7409 -235 3 640 2013 253 38 35 chr5 7268507 7269163 -145268096 - L1_Mur3 LINE L1 -593 5287 4630 3 640 630 0 0 0 chr5 7269166 7269236 -145268023 + (TTC)n Simple_repeat Simple_repeat 3 72 0 3 640 1025 145 0 6 chr5 7269236 7269416 -145267843 + CT-rich Low_complexity Low_complexity 2 180 0 3 640 1064 89 0 43 chr5 7269429 7269617 -145267642 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 640 1479 304 71 19 chr5 7269632 7270112 -145267147 - Lx5 LINE L1 -18 7032 6528 3 640 1282 266 27 0 chr5 7270113 7270523 -145266736 - L1_Mur3 LINE L1 -1281 4599 4179 3 640 1251 342 20 34 chr5 7270521 7271105 -145266154 + Lx7 LINE L1 6233 6808 -888 3 640 766 329 62 14 chr5 7271086 7271438 -145265821 + Lx7 LINE L1 6952 7320 -376 3 640 289 0 49 0 chr5 7271466 7271507 -145265752 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 3 640 37 0 0 0 chr5 7271646 7271683 -145265576 + AT_rich Low_complexity Low_complexity 1 37 0 3 640 1085 300 15 42 chr5 7274687 7275143 -145262116 - Lx9 LINE L1 -246 7398 6955 3 640 534 16 0 0 chr5 7275190 7275253 -145262006 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 640 609 14 0 0 chr5 7275390 7275460 -145261799 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 4 640 508 181 0 62 chr5 7275463 7275496 -145261763 + ORR1D1 LTR MaLR 1 32 -342 4 640 1935 179 30 22 chr5 7275496 7275857 -145261402 - ORR1B2 LTR MaLR -3 364 1 4 640 508 181 0 62 chr5 7275857 7275935 -145261324 + ORR1D1 LTR MaLR 33 105 -269 4 640 1362 227 66 30 chr5 7277342 7277674 -145259585 - ORR1B1 LTR MaLR -10 384 41 4 640 2292 154 250 26 chr5 7278522 7279065 -145258194 - Lx2B LINE L1 -10 6990 6326 4 640 893 287 45 56 chr5 7279123 7279411 -145257848 - B4 SINE B4 0 292 8 4 640 312 326 17 52 chr5 7279426 7279656 -145257603 - ORSL-2b DNA Tip100 -283 225 4 4 640 436 201 54 20 chr5 7279958 7280105 -145257154 + L1MC3 LINE L1 7633 7784 -1 4 640 422 319 165 35 chr5 7281018 7281540 -145255719 + L1MC4 LINE L1 6508 7097 -945 4 640 234 191 0 0 chr5 7281850 7281897 -145255362 + RMER6A LTR ERVK 1 47 -414 4 640 1030 195 15 5 chr5 7281910 7282116 -145255143 + RMER6A LTR ERVK 549 756 0 4 640 23 33 0 0 chr5 7282170 7282200 -145255059 + AT_rich Low_complexity Low_complexity 1 30 0 4 640 33 0 0 0 chr5 7282377 7282410 -145254849 + AT_rich Low_complexity Low_complexity 1 33 0 4 640 2223 98 6 0 chr5 7282493 7282810 -145254449 + ORR1A2 LTR MaLR 1 319 -8 4 640 213 39 0 0 chr5 7282857 7282883 -145254376 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 640 916 136 12 0 chr5 7282890 7283052 -145254207 + (GA)n Simple_repeat Simple_repeat 2 165 0 4 640 265 222 0 0 chr5 7283056 7283101 -145254158 + polypurine Low_complexity Low_complexity 1 45 0 4 640 399 68 0 0 chr5 7283103 7283162 -145254097 + (CAGG)n Simple_repeat Simple_repeat 2 60 0 4 640 230 197 0 32 chr5 7283162 7283225 -145254034 + GA-rich Low_complexity Low_complexity 2 62 0 4 640 389 322 27 22 chr5 7283316 7283500 -145253759 - Lx7 LINE L1 -469 7227 7043 4 640 600 14 0 0 chr5 7283953 7284022 -145253237 + (GA)n Simple_repeat Simple_repeat 1 69 0 4 640 216 0 0 0 chr5 7284664 7284688 -145252571 + (A)n Simple_repeat Simple_repeat 1 24 0 4 640 478 328 17 4 chr5 7284842 7285069 -145252190 - L1MB1 LINE L1 -203 6088 5855 4 640 596 224 0 0 chr5 7285219 7285326 -145251933 - B1_Mur2 SINE Alu -42 107 1 4 640 408 289 212 6 chr5 7285326 7285382 -145251877 - B4 SINE B4 -203 89 1 4 640 321 68 0 0 chr5 7285382 7285426 -145251833 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 640 222 205 0 0 chr5 7285477 7285516 -145251743 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 640 590 291 69 17 chr5 7285665 7285896 -145251363 - L1MB1 LINE L1 -483 5688 5446 4 640 513 246 56 28 chr5 7287470 7287612 -145249647 - B1F SINE Alu -1 148 3 4 640 218 56 28 0 chr5 7287742 7287778 -145249481 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 4 640 376 88 0 0 chr5 7288339 7288396 -145248863 - L1_Mus2 LINE L1 0 6566 6510 4 640 203 242 32 0 chr5 7288523 7288585 -145248674 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 640 198 0 0 0 chr5 7289897 7289919 -145247340 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 4 640 271 56 26 90 chr5 7290270 7290348 -145246911 + (CAGAGA)n Simple_repeat Simple_repeat 2 74 0 4 640 391 314 52 22 chr5 7290466 7290644 -145246615 + B3A SINE B2 3 172 -23 4 640 231 152 0 0 chr5 7290725 7290771 -145246488 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 640 241 87 52 42 chr5 7291160 7291256 -145246003 + A-rich Low_complexity Low_complexity 2 98 0 4 640 324 0 0 0 chr5 7291518 7291554 -145245705 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 4 640 4686 126 23 59 chr5 7293050 7293883 -145243376 + RLTR13B4 LTR ERVK 1 803 0 4 640 222 241 17 17 chr5 7294368 7294427 -145242832 - B4 SINE B4 -206 86 28 4 640 339 258 0 73 chr5 7295010 7295106 -145242153 - B4A SINE B4 0 292 204 4 640 2262 211 31 61 chr5 7295668 7296179 -145241080 - Lx7 LINE L1 -287 7409 6914 4 640 1130 88 0 0 chr5 7296204 7296352 -145240907 + B1_Mus1 SINE Alu 1 148 0 4 640 200 94 0 30 chr5 7296352 7296385 -145240874 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 640 323 219 0 10 chr5 7296961 7297058 -145240201 + GA-rich Low_complexity Low_complexity 1 96 0 4 640 1072 223 169 21 chr5 7297831 7298157 -145239102 + ORR1D1 LTR MaLR 1 374 0 4 640 508 118 85 9 chr5 7298404 7298519 -145238740 + Lx LINE L1 6509 6620 -34 4 640 2843 90 14 5 chr5 7299512 7299925 -145237334 - Lx2 LINE L1 0 6997 6581 4 640 333 0 0 0 chr5 7300493 7300530 -145236729 + (TTA)n Simple_repeat Simple_repeat 3 39 0 4 640 930 171 5 72 chr5 7300536 7300744 -145236515 - Lx3B LINE L1 -2 6971 6778 4 640 225 0 0 0 chr5 7300774 7300799 -145236460 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 4 640 4570 122 13 3 chr5 7300799 7301474 -145235785 + Lx3C LINE L1 6124 6805 -171 4 640 863 166 0 40 chr5 7302233 7302384 -145234875 - B1_Mus2 SINE Alu -2 145 1 4 640 221 132 0 70 chr5 7302424 7302481 -145234778 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 4 640 694 229 78 13 chr5 7302563 7302793 -145234466 - Lx9 LINE L1 -1 7643 7399 4 640 190 204 45 0 chr5 7303464 7303508 -145233751 - L3b LINE CR1 -320 162 117 4 640 21 0 0 0 chr5 7303596 7303617 -145233642 + AT_rich Low_complexity Low_complexity 1 21 0 4 640 204 143 24 0 chr5 7304702 7304744 -145232515 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 640 678 364 151 25 chr5 7306556 7306988 -145230271 + MLT1G1 LTR MaLR 9 494 -85 4 640 1362 289 145 17 chr5 7307680 7308454 -145228805 - L1_Mur3 LINE L1 -863 5017 4145 4 640 4349 105 21 3 chr5 7308538 7309160 -145228099 - L1_Mus3 LINE L1 -7 6631 5999 4 640 4030 117 0 0 chr5 7309162 7309735 -145227524 - L1_Mm LINE L1 -9 5874 5302 4 640 2990 60 13 0 chr5 7309735 7310120 -145227139 + MTA_Mm LTR MaLR 1 390 -6 4 640 476 174 22 0 chr5 7310123 7310215 -145227044 - L1_Mm LINE L1 -575 5308 5215 4 640 2256 300 81 59 chr5 7310260 7311274 -145225985 - L1_Mur3 LINE L1 -1786 4091 3023 4 640 305 247 98 55 chr5 7311274 7311437 -145225822 - ORR1E LTR MaLR -39 320 151 4 640 2256 300 81 59 chr5 7311437 7312167 -145225092 - L1_Mur3 LINE L1 -1786 3022 2252 4 640 256 325 106 0 chr5 7312273 7312396 -145224863 + L1MD3 LINE L1 6707 6842 -1153 4 640 4661 231 111 12 chr5 7312466 7313000 -145224259 - Lx6 LINE L1 0 7460 6895 4 640 721 84 17 0 chr5 7313000 7313119 -145224140 + (TC)n Simple_repeat Simple_repeat 2 122 0 4 640 4661 231 111 12 chr5 7313119 7313792 -145223467 - Lx6 LINE L1 -566 6894 6136 4 640 323 252 31 31 chr5 7313794 7313954 -145223305 - L1_Mur3 LINE L1 -3829 2051 1892 4 640 21 0 0 0 chr5 7315279 7315300 -145221959 + AT_rich Low_complexity Low_complexity 1 21 0 4 640 21 57 0 0 chr5 7315335 7315370 -145221889 + AT_rich Low_complexity Low_complexity 1 35 0 4 640 477 181 0 0 chr5 7315530 7315624 -145221635 + (TA)n Simple_repeat Simple_repeat 2 95 0 4 640 321 116 0 42 chr5 7316097 7316169 -145221090 + CT-rich Low_complexity Low_complexity 1 69 0 4 640 1117 92 6 6 chr5 7316174 7316348 -145220911 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 4 640 2299 304 43 42 chr5 7318096 7318392 -145218867 - Lx8 LINE L1 -147 7326 7016 4 640 812 83 21 7 chr5 7318392 7318537 -145218722 + (TA)n Simple_repeat Simple_repeat 2 148 0 4 640 2299 304 43 42 chr5 7318537 7318630 -145218629 - Lx8 LINE L1 -458 7015 6948 4 640 333 0 0 0 chr5 7318630 7318667 -145218592 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 640 2299 304 43 42 chr5 7318667 7318974 -145218285 - Lx8 LINE L1 -526 6947 6625 4 640 1626 171 23 67 chr5 7318974 7319318 -145217941 + ORR1A4 LTR MaLR 1 329 0 4 640 2299 304 43 42 chr5 7319318 7319571 -145217688 - Lx8 LINE L1 -849 6624 6375 4 640 25 0 0 0 chr5 7319629 7319654 -145217605 + AT_rich Low_complexity Low_complexity 1 25 0 4 640 231 379 104 21 chr5 7320546 7320786 -145216473 - L2 LINE L2 -458 2961 2702 4 640 5030 52 0 2 chr5 7321321 7321951 -145215308 + L1Md_F2 LINE L1 5949 6577 -5 4 640 234 189 83 120 chr5 7321979 7322087 -145215172 + MLT1F-int LTR MaLR 24 127 -1362 4 640 362 216 0 19 chr5 7322282 7322386 -145214873 + Lx7 LINE L1 7595 7696 0 4 640 797 330 90 40 chr5 7323630 7324151 -145213108 + Lx8 LINE L1 6910 7456 -17 4 640 2195 131 6 11 chr5 7324472 7324835 -145212424 - Lx2A1 LINE L1 0 7008 6648 4 640 180 0 0 0 chr5 7325080 7325100 -145212159 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 640 217 100 20 20 chr5 7327728 7327779 -145209480 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 4 640 339 191 0 0 chr5 7327917 7327985 -145209274 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 640 388 273 64 40 chr5 7328083 7328279 -145208980 + LTR33B LTR ERVL 10 216 -315 4 640 342 0 0 0 chr5 7329249 7329287 -145207972 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 640 230 255 14 14 chr5 7329482 7329569 -145207690 - MIRb SINE MIR -20 248 158 4 640 1494 181 35 119 chr5 7330342 7330738 -145206521 + ORR1B2 LTR MaLR 1 363 -4 4 640 213 213 0 0 chr5 7330764 7330811 -145206448 + CT-rich Low_complexity Low_complexity 3 49 0 4 640 256 91 73 0 chr5 7331433 7331488 -145205771 + T-rich Low_complexity Low_complexity 3 61 0 4 640 267 264 27 14 chr5 7332292 7332365 -145204894 - Lx9 LINE L1 -914 6730 6657 4 640 1251 292 84 49 chr5 7332374 7333041 -145204218 + Lx9 LINE L1 6770 7460 -184 4 640 666 37 0 0 chr5 7333041 7333122 -145204137 + (CA)n Simple_repeat Simple_repeat 2 82 0 4 640 540 30 0 0 chr5 7333229 7333295 -145203964 + (TC)n Simple_repeat Simple_repeat 2 67 0 4 640 517 94 0 0 chr5 7333851 7333936 -145203323 - L1_Mus4 LINE L1 0 6636 6552 4 640 1133 308 56 33 chr5 7334768 7334905 -145202354 + Lx5 LINE L1 6610 6761 -289 4 640 504 0 0 0 chr5 7334905 7334961 -145202298 + (TTG)n Simple_repeat Simple_repeat 2 57 0 4 640 1133 308 56 33 chr5 7334961 7335253 -145202006 + Lx5 LINE L1 6762 7049 -1 4 640 218 174 40 10 chr5 7335292 7335391 -145201868 + (TTATA)n Simple_repeat Simple_repeat 4 105 0 4 640 362 316 135 51 chr5 7336078 7336315 -145200944 - MLT1D LTR MaLR -8 497 241 4 640 405 0 0 0 chr5 7336456 7336501 -145200758 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 640 248 319 116 40 chr5 7338511 7338736 -145198523 - L4 LINE RTE -5 2024 1783 4 640 21 36 0 0 chr5 7339499 7339527 -145197732 + AT_rich Low_complexity Low_complexity 1 28 0 4 641 414 0 0 0 chr5 7340172 7340218 -145197041 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 641 24 67 0 0 chr5 7341212 7341257 -145196002 + AT_rich Low_complexity Low_complexity 1 45 0 5 641 257 224 0 33 chr5 7341272 7341332 -145195927 + (TATG)n Simple_repeat Simple_repeat 1 58 0 5 641 221 304 29 10 chr5 7342815 7342918 -145194341 + L3b LINE CR1 219 323 -159 5 641 264 127 0 0 chr5 7343718 7343773 -145193486 + (A)n Simple_repeat Simple_repeat 1 55 0 5 641 759 11 0 0 chr5 7345605 7345693 -145191566 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 641 447 68 0 0 chr5 7345702 7345761 -145191498 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 641 22 0 0 0 chr5 7346168 7346190 -145191069 + AT_rich Low_complexity Low_complexity 1 22 0 5 641 387 0 0 0 chr5 7347235 7347278 -145189981 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 641 719 93 0 45 chr5 7347574 7347686 -145189573 - B2_Mm2 SINE B2 -87 108 2 5 641 428 279 136 5 chr5 7348402 7348600 -145188659 - L1MC2 LINE L1 -144 6200 5977 5 641 424 290 29 7 chr5 7348629 7348768 -145188491 - L1MC2 LINE L1 -289 6055 5914 5 641 702 288 164 45 chr5 7348859 7349255 -145188004 + MLT1C LTR MaLR 18 460 -7 5 641 827 283 95 15 chr5 7349268 7349677 -145187582 - L1MC2 LINE L1 -554 5790 5349 5 641 362 21 0 21 chr5 7349683 7349731 -145187528 + (TTA)n Simple_repeat Simple_repeat 2 48 0 5 641 975 212 89 19 chr5 7349839 7350108 -145187151 - Lx4B LINE L1 -834 6224 5937 5 641 380 158 0 0 chr5 7350113 7350170 -145187089 - Lx4B LINE L1 -266 5611 5555 5 641 4082 201 64 25 chr5 7350170 7350994 -145186265 + Lx5 LINE L1 6195 7050 0 5 641 1005 276 87 8 chr5 7351010 7351411 -145185848 - L1MC2 LINE L1 -917 5229 4797 5 641 21 0 0 0 chr5 7351877 7351898 -145185361 + AT_rich Low_complexity Low_complexity 1 21 0 5 641 570 307 7 0 chr5 7352016 7352156 -145185103 + B1_Mur2 SINE Alu 3 143 -6 5 641 227 125 25 0 chr5 7352384 7352424 -145184835 + B2_Mm2 SINE B2 53 93 -102 5 641 527 229 52 65 chr5 7352390 7352544 -145184715 + B3 SINE B2 59 210 -6 5 641 925 341 65 11 chr5 7352626 7352994 -145184265 + Tigger7 DNA MER2_type 76 463 -2028 5 641 226 319 52 21 chr5 7353085 7353181 -145184078 + Tigger7 DNA MER2_type 2379 2477 -14 5 641 762 221 0 0 chr5 7353659 7353804 -145183455 - B1_Mus2 SINE Alu 0 147 3 5 641 28 29 0 0 chr5 7354202 7354237 -145183022 + AT_rich Low_complexity Low_complexity 1 35 0 5 641 2312 42 3 0 chr5 7354603 7354888 -145182371 + L1_Mus1 LINE L1 6282 6567 0 5 641 243 0 0 0 chr5 7354907 7354934 -145182325 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 641 243 61 0 0 chr5 7355250 7355283 -145181976 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 5 641 236 53 26 0 chr5 7355294 7355332 -145181927 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 641 1769 220 111 15 chr5 7355346 7355813 -145181446 - Lx5 LINE L1 -7 7043 6532 5 641 576 0 0 0 chr5 7356027 7356091 -145181168 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 641 610 103 2 5 chr5 7356091 7356175 -145181084 - B1_Mus2 SINE Alu -16 131 49 5 641 1332 160 12 12 chr5 7356175 7356416 -145180843 + L1_Mus3 LINE L1 6398 6638 0 5 641 247 221 56 144 chr5 7356416 7356456 -145180803 - PB1D7 SINE Alu -72 48 17 5 641 486 49 0 0 chr5 7357681 7357742 -145179517 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 5 641 1585 225 36 44 chr5 7357811 7358224 -145179035 - RLTR42-int LTR ERVK -3988 1534 1125 5 641 1605 216 46 19 chr5 7358646 7359014 -145178245 - ORR1C1 LTR MaLR 0 378 1 5 641 266 337 34 0 chr5 7359909 7359998 -145177261 + Tigger10 DNA Tigger 1553 1644 -199 5 641 216 0 0 0 chr5 7359998 7360022 -145177237 + (A)n Simple_repeat Simple_repeat 1 24 0 5 641 17485 169 46 93 chr5 7360024 7363357 -145173902 + L1_Mus1 LINE L1 218 3694 -2183 5 641 3069 146 4 4 chr5 7363357 7363844 -145173415 + RLTR1C LTR ERV1 2 488 -15 5 641 17485 169 46 93 chr5 7363844 7364729 -145172530 + L1_Mus1 LINE L1 3695 4619 -1258 5 641 2221 148 12 22 chr5 7364729 7365142 -145172117 + RLTR9E LTR ERVK 1 409 0 5 641 17485 193 40 120 chr5 7365142 7365790 -145171469 + L1_Mus1 LINE L1 4620 5231 -646 5 641 387 0 0 0 chr5 7365790 7365833 -145171426 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 641 17485 126 30 33 chr5 7365833 7367135 -145170124 + L1_Mus1 LINE L1 5232 6567 0 5 641 214 162 44 0 chr5 7367310 7367378 -145169881 + GA-rich Low_complexity Low_complexity 2 72 0 5 641 718 297 46 0 chr5 7367864 7368059 -145169200 - Lx9 LINE L1 -954 6690 6487 5 641 982 101 0 45 chr5 7368059 7368214 -145169045 + B1_Mus1 SINE Alu 1 148 0 5 641 232 83 20 20 chr5 7368214 7368263 -145168996 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 5 641 685 226 63 19 chr5 7368269 7368427 -145168832 - Lx9 LINE L1 -1135 6509 6345 5 641 408 88 0 0 chr5 7368427 7368484 -145168775 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 641 203 156 0 0 chr5 7368488 7368520 -145168739 + (TATG)n Simple_repeat Simple_repeat 3 34 0 5 641 827 221 64 42 chr5 7368608 7368982 -145168277 - Lx9 LINE L1 -1544 6100 5668 5 641 3622 115 2 13 chr5 7368972 7369520 -145167739 - L1_Mm LINE L1 -54 5829 5288 5 641 232 45 21 64 chr5 7369520 7369567 -145167692 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 5 641 10948 59 12 2 chr5 7369572 7371730 -145165529 - L1Md_F2 LINE L1 0 6582 4399 5 641 206 103 51 0 chr5 7371783 7371822 -145165437 + (TATAG)n Simple_repeat Simple_repeat 5 45 0 5 641 353 200 21 0 chr5 7371827 7371922 -145165337 - L1_Mur3 LINE L1 -593 5287 5191 5 641 845 344 85 13 chr5 7371961 7372432 -145164827 + Lx8 LINE L1 6517 7021 -452 5 641 2748 119 50 14 chr5 7372462 7372905 -145164354 + Lx LINE L1 6195 6653 -1 5 641 558 293 2 10 chr5 7372978 7373170 -145164089 + Lx7 LINE L1 5331 5518 -362 5 641 208 163 0 23 chr5 7373171 7373215 -145164044 + A-rich Low_complexity Low_complexity 3 45 0 5 641 4576 142 108 17 chr5 7373228 7373596 -145163663 + RMER17A2 LTR ERVK 1 453 -453 5 641 633 14 0 0 chr5 7373596 7373670 -145163589 + (TC)n Simple_repeat Simple_repeat 2 75 0 5 641 4576 142 108 17 chr5 7373670 7374131 -145163128 + RMER17A2 LTR ERVK 454 905 -1 5 641 462 271 9 0 chr5 7374143 7374250 -145163009 - ORR1D1 LTR MaLR -17 357 250 5 641 387 0 0 0 chr5 7374250 7374293 -145162966 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 641 586 299 19 0 chr5 7374294 7374451 -145162808 - ORR1D1 LTR MaLR -214 160 1 5 641 904 271 113 13 chr5 7374453 7374818 -145162441 + Lx7 LINE L1 5526 5926 -1770 5 641 521 320 79 4 chr5 7375007 7375038 -145162221 + Lx7 LINE L1 6149 6181 -1292 5 641 354 98 0 0 chr5 7375038 7375089 -145162170 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 641 521 320 79 4 chr5 7375089 7375324 -145161935 + Lx7 LINE L1 6182 6434 -1039 5 641 277 43 21 42 chr5 7375330 7375378 -145161881 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 5 641 3151 153 75 2 chr5 7375398 7375954 -145161305 - Lx2B LINE L1 0 7000 6404 5 641 1038 170 85 0 chr5 7375954 7376142 -145161117 + Lx2 LINE L1 6146 6349 -648 5 641 1680 176 44 3 chr5 7376166 7376485 -145160774 - Lx3B LINE L1 -2 6971 6640 5 641 21 71 0 0 chr5 7376785 7376827 -145160432 + AT_rich Low_complexity Low_complexity 1 42 0 5 641 800 29 20 0 chr5 7377016 7377118 -145160141 + (GAAA)n Simple_repeat Simple_repeat 2 105 0 5 641 24 53 0 0 chr5 7377548 7377586 -145159673 + AT_rich Low_complexity Low_complexity 1 38 0 5 641 408 40 0 0 chr5 7377912 7377962 -145159297 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 641 227 298 0 0 chr5 7378088 7378145 -145159114 + ID4 SINE ID 23 79 -4 5 641 587 268 36 12 chr5 7379093 7379259 -145158000 - MTD LTR MaLR -232 187 18 5 641 23 54 0 0 chr5 7379827 7379864 -145157395 + AT_rich Low_complexity Low_complexity 1 37 0 5 641 1824 257 32 24 chr5 7380234 7380732 -145156527 + RMER19C LTR ERVK 110 611 0 5 641 291 271 154 92 chr5 7381237 7381477 -145155782 + LTR85c LTR Gypsy? 428 682 -141 5 641 442 247 24 107 chr5 7381893 7382061 -145155198 + B4A SINE B4 138 291 -1 5 641 461 17 17 0 chr5 7382061 7382119 -145155140 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 641 35 0 0 0 chr5 7383224 7383259 -145154000 + AT_rich Low_complexity Low_complexity 1 35 0 5 641 395 207 215 0 chr5 7384272 7384393 -145152866 - Lx9 LINE L1 -314 7330 7184 5 641 1049 215 85 20 chr5 7384388 7384683 -145152576 + Lx9 LINE L1 7331 7644 0 5 641 15750 189 40 31 chr5 7384700 7386868 -145150391 - Lx5 LINE L1 0 7050 4843 5 641 1732 153 14 70 chr5 7386868 7387212 -145150047 - ORR1A4 LTR MaLR -4 325 1 5 641 15750 167 39 19 chr5 7387212 7389814 -145147445 - Lx5 LINE L1 -1035 4842 2190 5 641 508 237 107 0 chr5 7389808 7389985 -145147274 + Lx9 LINE L1 7406 7601 -43 5 641 10878 144 29 16 chr5 7389985 7392767 -145144492 + Lx LINE L1 3829 6646 -8 5 641 500 356 81 42 chr5 7393110 7393567 -145143692 + L2 LINE L2 2230 2704 -715 5 641 23 0 0 0 chr5 7393942 7393965 -145143294 + AT_rich Low_complexity Low_complexity 1 23 0 5 641 514 281 96 22 chr5 7394136 7394365 -145142894 - MIR SINE MIR -6 256 11 5 641 515 313 211 36 chr5 7394479 7394978 -145142281 + MLT1E3 LTR MaLR 40 624 0 5 641 235 286 20 39 chr5 7395234 7395334 -145141925 + MLT2B2 LTR ERVL 16 113 -402 5 641 2004 204 24 44 chr5 7395334 7395744 -145141515 - MTC LTR MaLR 0 421 20 5 641 229 341 112 16 chr5 7395735 7395860 -145141399 + MLT2B2 LTR ERVL 186 322 -193 5 641 274 275 57 63 chr5 7396080 7396239 -145141020 + Charlie2b DNA MER1_type 2618 2775 -7 5 641 289 272 35 19 chr5 7400699 7400870 -145136389 - Lx8 LINE L1 -15 5868 5692 5 641 25467 125 37 12 chr5 7400951 7405667 -145131592 - Lx8 LINE L1 -320 5563 725 5 641 458 238 53 30 chr5 7405669 7405846 -145131413 - Lx8 LINE L1 -5813 803 675 5 641 309 294 3 160 chr5 7405869 7406057 -145131202 - L1VL1 LINE L1 -6085 333 6 5 641 1237 138 0 0 chr5 7406049 7406245 -145131014 - L1_Mur1 LINE L1 -1942 3944 3749 5 641 281 289 34 0 chr5 7406242 7406391 -145130868 - L1M2 LINE L1 -2971 3172 3019 5 641 836 328 91 87 chr5 7406430 7406948 -145130311 - MT2A LTR ERVL -13 520 1 5 641 253 324 123 22 chr5 7407427 7407743 -145129516 + L1M5 LINE L1 2231 2578 -3568 5 641 495 265 51 0 chr5 7408248 7408365 -145128894 + RSINE1 SINE B4 2 124 -41 5 641 270 0 0 0 chr5 7408392 7408422 -145128837 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 641 775 302 41 20 chr5 7408796 7408992 -145128267 + B3 SINE B2 10 209 -7 5 641 198 71 0 0 chr5 7409041 7409069 -145128190 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 641 850 259 10 5 chr5 7409151 7409353 -145127906 + B3 SINE B2 3 205 -11 5 641 5289 136 0 0 chr5 7409426 7410193 -145127066 - MERVL_2A-int LTR ERVL -3723 2038 1272 5 641 31152 87 18 5 chr5 7410607 7415784 -145121475 + L1Md_F2 LINE L1 339 5583 -300 6 641 7631 70 0 4 chr5 7415787 7416787 -145120472 + L1Md_F2 LINE L1 5587 6582 0 6 641 2861 87 5 10 chr5 7416992 7417389 -145119870 - MTA_Mm LTR MaLR 0 396 2 6 641 3664 168 3 12 chr5 7418226 7418896 -145118363 - Lx LINE L1 -73 5810 5147 6 641 5298 111 29 6 chr5 7418896 7419684 -145117575 + Lx LINE L1 5829 6634 -20 6 641 7242 7 0 0 chr5 7419783 7420600 -145116659 - L1Md_A LINE L1 -95 5788 4972 6 641 7190 18 1 0 chr5 7420600 7421427 -145115832 + L1Md_A LINE L1 5753 6580 -2 6 641 609 278 7 22 chr5 7422642 7422778 -145114481 - RSINE1 SINE B4 -22 143 10 6 641 744 71 0 0 chr5 7422973 7423072 -145114187 + (TG)n Simple_repeat Simple_repeat 1 99 0 6 641 21 36 0 0 chr5 7424357 7424385 -145112874 + AT_rich Low_complexity Low_complexity 1 28 0 6 641 535 270 143 0 chr5 7425392 7425618 -145111641 + MTD LTR MaLR 140 419 0 6 641 306 180 0 0 chr5 7426182 7426243 -145111016 + CT-rich Low_complexity Low_complexity 2 62 0 6 641 7115 185 21 17 chr5 7426261 7427982 -145109277 - Lx2B LINE L1 0 7000 5264 6 641 189 0 0 0 chr5 7428149 7428170 -145109089 + (T)n Simple_repeat Simple_repeat 1 21 0 6 641 2691 96 8 10 chr5 7428248 7428650 -145108609 - RLTR45 LTR ERVK 0 403 3 6 641 17746 42 13 5 chr5 7428879 7431041 -145106218 - RLTR45-int LTR ERVK -1 7243 5065 6 641 3905 85 30 33 chr5 7431034 7431643 -145105616 - RLTR45-int LTR ERVK -3258 3986 3380 6 641 11783 42 39 6 chr5 7431613 7433444 -145103815 - RLTR45-int LTR ERVK -4032 3212 1322 6 641 263 227 43 43 chr5 7433739 7433831 -145103428 - MMTV-int LTR ERVK -4749 2504 2413 6 641 1119 58 0 0 chr5 7434231 7434369 -145102890 - RLTR45-int LTR ERVK -6426 818 681 6 641 4755 50 87 16 chr5 7434667 7435313 -145101946 - RLTR45-int LTR ERVK -6552 692 1 6 641 3187 81 56 15 chr5 7435313 7435776 -145101483 - RLTR45 LTR ERVK 0 482 1 6 641 272 301 87 52 chr5 7438053 7438225 -145099034 + MIR SINE MIR 7 184 -78 6 641 244 324 156 27 chr5 7438540 7438797 -145098462 + L1MB1 LINE L1 5879 6168 0 6 641 23 33 0 0 chr5 7439110 7439140 -145098119 + AT_rich Low_complexity Low_complexity 1 30 0 6 641 466 361 93 45 chr5 7439549 7439839 -145097420 + ORR1E LTR MaLR 13 316 -43 6 641 3900 211 46 15 chr5 7439839 7440649 -145096610 - Lx5 LINE L1 -7 7043 6209 6 641 898 319 81 32 chr5 7442072 7442117 -145095142 - MTEa LTR MaLR -54 325 267 6 641 2998 128 72 110 chr5 7442117 7442742 -145094517 + MT2B LTR ERVL 1 601 0 6 641 898 319 81 32 chr5 7442742 7443004 -145094255 - MTEa LTR MaLR -113 266 3 6 641 249 57 0 0 chr5 7443201 7443236 -145094023 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 641 334 241 212 17 chr5 7443238 7443356 -145093903 + HAL1-3A_ME LINE L1 1977 2117 -741 6 641 46 68 0 0 chr5 7443363 7443451 -145093808 + AT_rich Low_complexity Low_complexity 1 88 0 6 641 313 275 0 0 chr5 7443767 7443847 -145093412 - LTR68 LTR ERV1 -2 738 659 6 641 273 57 0 0 chr5 7444171 7444206 -145093053 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 6 641 2878 161 48 9 chr5 7444442 7444980 -145092279 - L1_Mur2 LINE L1 -18 5859 5301 6 641 1318 55 0 0 chr5 7444975 7445139 -145092120 - L1Md_F2 LINE L1 -605 5977 5814 6 641 3335 57 2 54 chr5 7445137 7445598 -145091661 + L1Md_F2 LINE L1 6003 6439 -143 6 641 3874 32 13 0 chr5 7445603 7446125 -145091134 + L1Md_F3 LINE L1 6101 6584 0 6 641 881 124 32 13 chr5 7446193 7446348 -145090911 + L1Md_F2 LINE L1 6425 6582 0 6 641 3066 157 32 5 chr5 7446359 7446928 -145090331 - L1_Mur2 LINE L1 -562 5315 4732 6 641 4978 204 57 32 chr5 7446925 7448074 -145089185 + Lx4B LINE L1 5877 7054 -4 6 641 328 267 108 70 chr5 7448182 7448339 -145088920 + B3 SINE B2 53 215 -1 6 641 243 0 0 0 chr5 7448415 7448442 -145088817 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 641 470 196 111 76 chr5 7448914 7449085 -145088174 + Lx7 LINE L1 7365 7541 -155 6 641 22 80 0 0 chr5 7449109 7449159 -145088100 + AT_rich Low_complexity Low_complexity 1 50 0 6 641 298 321 99 53 chr5 7449191 7449309 -145087950 + L1MC3 LINE L1 6731 6866 -919 6 641 1295 63 6 0 chr5 7449309 7449483 -145087776 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 6 641 298 321 99 53 chr5 7449483 7449647 -145087612 + L1MC3 LINE L1 6867 7026 -759 6 641 285 294 194 28 chr5 7449990 7450309 -145086950 + L1MC3 LINE L1 7597 7968 -27 6 641 518 263 90 19 chr5 7451353 7451508 -145085751 + B3 SINE B2 48 213 -3 6 641 21 0 0 0 chr5 7451509 7451530 -145085729 + AT_rich Low_complexity Low_complexity 1 21 0 6 641 3123 76 2 0 chr5 7453072 7453467 -145083792 - MTA_Mm LTR MaLR 0 396 1 6 641 423 306 103 18 chr5 7454509 7454732 -145082527 + MER2 DNA MER2_type 26 267 -78 6 641 2070 213 27 152 chr5 7455619 7456317 -145080942 - RMER19C LTR ERVK 0 611 1 6 641 219 298 55 109 chr5 7456686 7456814 -145080445 - L2c LINE L2 -4 3383 3263 6 641 620 324 125 12 chr5 7456926 7457245 -145080014 + L2 LINE L2 2554 2908 -511 6 641 462 352 75 6 chr5 7458158 7458318 -145078941 - B4A SINE B4 -112 180 10 6 641 484 53 0 13 chr5 7458456 7458533 -145078726 - L1Md_F2 LINE L1 -2 6580 6505 6 641 663 289 21 5 chr5 7458834 7459022 -145078237 + B3A SINE B2 3 193 -5 6 641 657 290 43 27 chr5 7459052 7459240 -145078019 + B3 SINE B2 24 214 -2 6 641 24 0 0 0 chr5 7459243 7459267 -145077992 + AT_rich Low_complexity Low_complexity 1 24 0 6 641 27 29 0 0 chr5 7459304 7459338 -145077921 + AT_rich Low_complexity Low_complexity 1 34 0 6 641 791 224 72 5 chr5 7460061 7460254 -145077005 + B3 SINE B2 1 206 -10 6 641 413 233 0 0 chr5 7460734 7460837 -145076422 - Lx9 LINE L1 -227 7417 7315 6 641 525 141 12 0 chr5 7460938 7461023 -145076236 + MTC LTR MaLR 1 86 -335 6 641 621 239 26 48 chr5 7461094 7461283 -145075976 + Lx9 LINE L1 5787 5971 -1673 6 641 1730 297 61 31 chr5 7461462 7462101 -145075158 + Lx9 LINE L1 6358 7015 -629 6 641 26 0 0 0 chr5 7462151 7462177 -145075082 + AT_rich Low_complexity Low_complexity 1 26 0 6 641 589 246 51 23 chr5 7462345 7462561 -145074698 - L1_Rod LINE L1 -1068 5075 4791 6 641 1850 205 55 5 chr5 7462561 7462958 -145074301 + MTC LTR MaLR 1 417 -4 6 641 1246 268 48 42 chr5 7462974 7463635 -145073624 - L1_Rod LINE L1 -1304 4842 4120 6 641 392 317 140 21 chr5 7463640 7463969 -145073290 + Lx9 LINE L1 7248 7615 -29 6 641 23 0 0 0 chr5 7465498 7465521 -145071738 + AT_rich Low_complexity Low_complexity 1 23 0 6 641 2384 111 123 19 chr5 7465586 7466016 -145071243 + IAPLTR2_Mm LTR ERVK 1 475 0 6 641 4078 82 27 42 chr5 7466017 7466764 -145070495 + IAPEz-int LTR ERVK 9 662 -5819 6 641 2189 72 0 0 chr5 7466764 7467042 -145070217 + IAPEz-int LTR ERVK 1359 1636 -4845 6 641 6109 39 3 19 chr5 7467041 7467799 -145069460 + IAPEz-int LTR ERVK 5736 6481 0 6 641 2361 116 123 19 chr5 7467799 7468229 -145069030 + IAPLTR2_Mm LTR ERVK 1 475 0 6 641 6974 137 9 2 chr5 7468565 7470237 -145067022 - L1_Mus3 LINE L1 -5 6633 4952 6 641 931 141 0 0 chr5 7470242 7470377 -145066882 + B2_Mm2 SINE B2 29 163 -32 6 641 592 330 19 37 chr5 7470420 7470634 -145066625 - B3 SINE B2 -6 210 1 6 80 232 272 56 42 chr5 7471023 7471165 -145066094 + L1MCb LINE L1 34 177 -5868 6 642 252 267 33 0 chr5 7471300 7471390 -145065869 + L1MCb LINE L1 4551 4643 -1921 6 642 472 253 92 19 chr5 7471394 7471580 -145065679 - MTD LTR MaLR -14 405 193 6 642 368 327 143 15 chr5 7471754 7472027 -145065232 + L1MC LINE L1 4257 4564 -1582 6 642 3036 231 32 11 chr5 7472027 7472876 -145064383 + Lx6 LINE L1 5023 5975 -1485 6 642 1405 243 3 3 chr5 7472893 7473194 -145064065 + Lx6 LINE L1 6414 6714 -746 6 642 24 67 0 0 chr5 7473194 7473239 -145064020 + AT_rich Low_complexity Low_complexity 1 45 0 6 642 2176 218 2 14 chr5 7473250 7473665 -145063594 + Lx6 LINE L1 6718 7127 -333 6 642 14342 120 11 23 chr5 7473667 7476312 -145060947 + L1VL4 LINE L1 952 3547 -2336 6 642 9389 163 8 11 chr5 7476310 7477239 -145060020 - L1_Mm LINE L1 -639 5244 4318 6 642 5134 61 0 0 chr5 7477239 7477890 -145059369 - L1_Mus1 LINE L1 -1 6566 5916 6 642 9389 163 8 11 chr5 7477890 7478669 -145058590 - L1_Mm LINE L1 -1566 4317 3540 6 642 6099 110 10 17 chr5 7478665 7479649 -145057610 + MusHAL1 LINE L1 1348 2324 -388 6 642 270 257 0 75 chr5 7479678 7479758 -145057501 - RLTR22_Mus LTR ERVK -193 1615 1542 6 642 4224 169 84 43 chr5 7479925 7480756 -145056503 - RLTR22_Mur LTR ERVK -815 1033 173 6 642 549 44 0 0 chr5 7480756 7480824 -145056435 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 642 4224 169 84 43 chr5 7480824 7480983 -145056276 - RLTR22_Mur LTR ERVK -1676 172 5 6 642 324 307 68 0 chr5 7482293 7482381 -145054878 + PB1D9 SINE Alu 22 115 -5 6 642 315 255 169 20 chr5 7482384 7482532 -145054727 + L1MC3 LINE L1 5808 5977 -1808 6 642 1058 312 104 66 chr5 7482567 7484190 -145053069 + L1MC3 LINE L1 6079 7763 -22 6 642 22 0 0 0 chr5 7484329 7484351 -145052908 + AT_rich Low_complexity Low_complexity 1 22 0 6 642 417 20 0 0 chr5 7484485 7484535 -145052724 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 642 1979 206 20 67 chr5 7486095 7486636 -145050623 + L1_Mur3 LINE L1 267 782 -6930 6 642 211 264 167 0 chr5 7487171 7487243 -145050016 + B1F1 SINE Alu 12 95 -54 6 642 301 306 63 58 chr5 7487244 7487435 -145049824 + HAL1-3A_ME LINE L1 2015 2206 -652 6 642 286 195 0 25 chr5 7487447 7487526 -145049733 + GA-rich Low_complexity Low_complexity 1 77 0 6 642 223 309 96 0 chr5 7490149 7490243 -145047016 - MIRb SINE MIR -40 228 126 6 642 564 267 32 54 chr5 7490256 7490442 -145046817 + B3 SINE B2 35 216 0 6 642 706 262 145 82 chr5 7490553 7491077 -145046182 - L1MC2 LINE L1 -10 6334 5752 6 642 4253 99 0 2 chr5 7491077 7491663 -145045596 + L1_Mus1 LINE L1 5983 6567 0 6 642 706 262 145 82 chr5 7491663 7491746 -145045513 - L1MC2 LINE L1 -593 5751 5689 6 642 788 281 95 71 chr5 7491873 7492210 -145045049 - MLT1C LTR MaLR -8 459 115 6 642 370 286 127 0 chr5 7492323 7492449 -145044810 - B3 SINE B2 -6 210 69 6 642 303 257 9 56 chr5 7492488 7492595 -145044664 - L1MC2 LINE L1 -966 5180 5079 6 642 2839 25 5 59 chr5 7492597 7492985 -145044274 + IAPLTR1_Mm LTR ERVK 1 367 0 6 642 1017 119 74 0 chr5 7492985 7493161 -145044098 + IAPEz-int LTR ERVK 8 196 -6285 6 642 1047 142 16 21 chr5 7493132 7493319 -145043940 + MMERVK10C-int LTR ERVK 67 252 -7329 6 642 2317 26 0 0 chr5 7493319 7493584 -145043675 + IAPEz-int LTR ERVK 5290 5554 -927 6 642 6972 30 4 1 chr5 7493574 7494386 -145042873 + IAPEz-int LTR ERVK 5668 6481 0 6 642 2839 25 5 59 chr5 7494386 7494774 -145042485 + IAPLTR1_Mm LTR ERVK 1 367 0 6 642 1057 249 104 68 chr5 7494792 7495399 -145041860 - L1MC2 LINE L1 -1116 5030 4402 6 642 216 111 0 0 chr5 7495408 7495444 -145041815 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 6 642 1217 47 0 0 chr5 7495444 7495592 -145041667 - B1_Mus1 SINE Alu 0 148 1 6 642 253 244 35 11 chr5 7495639 7495726 -145041533 - L1MC2 LINE L1 -1794 4352 4264 6 642 783 199 350 23 chr5 7495759 7495979 -145041280 + Lx4B LINE L1 6750 7041 -17 6 642 4908 162 38 6 chr5 7496302 7497191 -145040068 - Lx2 LINE L1 -1 6996 6079 6 642 207 0 0 0 chr5 7497290 7497313 -145039946 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 642 696 221 8 0 chr5 7497313 7497444 -145039815 - B1_Mus1 SINE Alu -9 139 8 6 642 210 37 0 0 chr5 7497449 7497476 -145039783 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 642 401 332 58 95 chr5 7497644 7497970 -145039289 + RLTR25A LTR ERVK 1 314 -789 6 642 294 133 0 0 chr5 7498164 7498171 -145039088 + (A)n Simple_repeat Simple_repeat 1 7 0 6 642 7331 10 0 4 chr5 7498171 7499051 -145038208 + L1Md_T LINE L1 5755 6582 0 6 642 21 36 0 0 chr5 7499061 7499089 -145038170 + AT_rich Low_complexity Low_complexity 1 28 0 6 642 248 26 77 0 chr5 7500528 7500567 -145036692 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 1 642 4136 141 30 6 chr5 7500567 7501306 -145035953 + L1VL4 LINE L1 186 923 -5379 2 642 23398 72 5 3 chr5 7501302 7505362 -145031897 + L1Md_A LINE L1 446 4470 -1413 3 642 17518 46 3 12 chr5 7505359 7508467 -145028792 + L1Md_F2 LINE L1 417 3490 -2393 4 642 1982 33 0 0 chr5 7508459 7508702 -145028557 + L1Md_F2 LINE L1 5344 5586 -297 4 642 7781 55 10 7 chr5 7508702 7509581 -145027678 + L1Md_F2 LINE L1 5587 6472 -110 4 642 248 0 31 0 chr5 7509581 7509613 -145027646 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 5 642 7781 55 10 7 chr5 7509613 7509726 -145027533 + L1Md_F2 LINE L1 6473 6580 -2 4 642 22076 165 14 10 chr5 7509726 7515086 -145022173 + Lx LINE L1 1260 6645 -9 6 642 796 258 68 0 chr5 7515559 7515749 -145021510 + B3 SINE B2 2 204 -12 7 642 22 0 0 0 chr5 7515756 7515778 -145021481 + AT_rich Low_complexity Low_complexity 1 22 0 8 642 22 56 0 0 chr5 7515791 7515827 -145021432 + AT_rich Low_complexity Low_complexity 1 36 0 9 642 1432 245 25 30 chr5 7516824 7517190 -145020069 - RMER19C LTR ERVK 0 611 248 1 642 22 56 0 0 chr5 7517341 7517377 -145019882 + AT_rich Low_complexity Low_complexity 1 36 0 1 642 222 281 65 46 chr5 7518542 7518650 -145018609 - MIR SINE MIR -36 226 117 1 642 584 359 86 23 chr5 7518932 7519328 -145017931 + MER119 DNA MER1_type 131 551 -32 1 642 1410 256 103 11 chr5 7520541 7520920 -145016339 - MTD LTR MaLR -5 414 1 1 642 29 0 0 0 chr5 7521215 7521244 -145016015 + AT_rich Low_complexity Low_complexity 1 29 0 1 642 656 111 0 8 chr5 7521412 7521539 -145015720 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 1 642 482 192 144 0 chr5 7521739 7521906 -145015353 - Lx9 LINE L1 -1 7643 7453 1 642 1100 96 6 0 chr5 7522056 7522233 -145015026 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 642 351 319 31 57 chr5 7523749 7523942 -145013317 - MIR SINE MIR -21 241 54 1 642 802 73 8 8 chr5 7524376 7524500 -145012759 + Lx LINE L1 6529 6652 -2 2 642 321 118 0 0 chr5 7524940 7524991 -145012268 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 642 4426 18 0 0 chr5 7525493 7525986 -145011273 + MT2_Mm LTR ERVL 1 493 0 2 642 45282 15 7 0 chr5 7525986 7531319 -145005940 + MERVL-int LTR ERVL 1 5371 -114 2 642 399 123 13 40 chr5 7531319 7531395 -145005864 + ORR1A3-int LTR MaLR 567 640 -1323 2 642 302 0 0 0 chr5 7531395 7531433 -145005826 + MERVL-int LTR ERVL 5448 5485 0 2 642 4439 16 0 0 chr5 7531433 7531926 -145005333 + MT2_Mm LTR ERVL 1 493 0 2 642 21 36 0 0 chr5 7532093 7532121 -145005138 + AT_rich Low_complexity Low_complexity 1 28 0 2 642 317 306 42 0 chr5 7532560 7532632 -145004627 + RSINE1 SINE B4 62 136 -29 2 642 1363 297 56 23 chr5 7533913 7534427 -145002832 - Lx8 LINE L1 -717 6756 6226 2 642 6863 97 4 17 chr5 7535213 7536903 -145000356 - L1_Mus3 LINE L1 -4 6634 4956 2 642 30 77 0 0 chr5 7537249 7537314 -144999945 + AT_rich Low_complexity Low_complexity 1 65 0 2 642 714 55 0 0 chr5 7538404 7538495 -144998764 + (GGA)n Simple_repeat Simple_repeat 3 93 0 2 642 908 186 43 101 chr5 7538867 7539195 -144998064 - Lx9 LINE L1 -15 7629 7321 3 642 738 34 0 0 chr5 7539488 7539577 -144997682 + (TC)n Simple_repeat Simple_repeat 2 90 0 3 642 25 0 0 0 chr5 7539873 7539898 -144997361 + AT_rich Low_complexity Low_complexity 1 25 0 3 642 396 184 0 0 chr5 7541249 7541347 -144995912 + A-rich Low_complexity Low_complexity 1 98 0 3 642 309 361 58 58 chr5 7541644 7541850 -144995409 + L2 LINE L2 1144 1349 -2070 3 642 270 132 0 0 chr5 7541978 7542031 -144995228 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 642 249 163 0 0 chr5 7542039 7542088 -144995171 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 642 225 313 0 0 chr5 7542212 7542279 -144994980 + CT-rich Low_complexity Low_complexity 3 69 0 3 642 304 315 56 0 chr5 7542355 7542444 -144994815 - MER5A1 DNA MER1_type -48 118 25 3 642 216 0 0 0 chr5 7542715 7542739 -144994520 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 642 309 82 0 0 chr5 7542739 7542788 -144994471 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 642 344 288 65 100 chr5 7543559 7543729 -144993530 - RSINE1 SINE B4 0 165 2 4 642 262 392 22 17 chr5 7544072 7544251 -144993008 + LFSINE_Vert SINE SINE 31 210 -249 4 642 250 390 40 33 chr5 7544336 7544487 -144992772 - MIRc SINE MIR 0 268 117 4 642 256 300 124 19 chr5 7544883 7545035 -144992224 - MIR SINE MIR -82 180 20 4 642 425 244 21 70 chr5 7545427 7545559 -144991700 - MER5A1 DNA MER1_type -29 137 9 4 642 193 367 108 0 chr5 7545988 7546108 -144991151 + MIRm SINE MIR 44 176 -100 4 642 1704 103 30 8 chr5 7547403 7547666 -144989593 - L1_Mus3 LINE L1 -5 6633 6365 4 642 189 107 0 0 chr5 7548527 7548555 -144988704 + (CTG)n Simple_repeat Simple_repeat 2 29 0 4 642 218 343 49 0 chr5 7548870 7548972 -144988287 + MIR SINE MIR 7 113 -149 4 642 234 0 0 0 chr5 7549680 7549706 -144987553 + (T)n Simple_repeat Simple_repeat 1 26 0 5 642 1169 75 0 0 chr5 7549706 7549853 -144987406 - B1_Mm SINE Alu 0 147 1 5 642 257 284 0 0 chr5 7550760 7550827 -144986432 - Lx9 LINE L1 -533 7111 7045 5 642 644 189 13 47 chr5 7550826 7550976 -144986283 + Lx9 LINE L1 7321 7465 -179 5 642 23 78 0 0 chr5 7551039 7551090 -144986169 + AT_rich Low_complexity Low_complexity 1 51 0 5 642 276 196 92 33 chr5 7551131 7551284 -144985975 + Lx9 LINE L1 7476 7637 -7 5 642 495 309 38 38 chr5 7551406 7551722 -144985537 + L1MD3 LINE L1 7680 7995 0 5 642 402 233 317 24 chr5 7552577 7552744 -144984515 - B3 SINE B2 0 216 1 5 642 1561 111 95 0 chr5 7552944 7553197 -144984062 + IAPEY2_LTR LTR ERVK 81 357 0 5 642 29451 71 10 2 chr5 7553197 7557739 -144979520 + IAPEY3-int LTR ERVK 1 4601 -3079 5 642 17488 128 16 3 chr5 7557737 7560590 -144976669 + IAPEY3-int LTR ERVK 4790 7678 -2 5 642 1869 118 81 0 chr5 7560598 7560895 -144976364 + IAPEY2_LTR LTR ERVK 35 355 -2 5 642 2273 252 77 96 chr5 7560949 7561952 -144975307 + RMER17B LTR ERVK 1 856 -4 5 642 2678 284 35 12 chr5 7561978 7562822 -144974437 - Lx7 LINE L1 -505 7191 6328 6 642 25 65 0 0 chr5 7563657 7563703 -144973556 + AT_rich Low_complexity Low_complexity 1 46 0 6 642 5538 129 33 25 chr5 7563751 7564691 -144972568 + Lx2 LINE L1 6049 6995 -2 6 642 298 299 101 71 chr5 7564802 7564971 -144972288 + B4A SINE B4 57 230 -62 6 642 414 0 0 0 chr5 7564995 7565041 -144972218 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 642 24 0 0 0 chr5 7565147 7565171 -144972088 + AT_rich Low_complexity Low_complexity 1 24 0 6 642 226 327 75 56 chr5 7565660 7565767 -144971492 + L2b LINE L2 3237 3345 -30 6 642 528 240 7 52 chr5 7565860 7565873 -144971386 + ID_B1 SINE B4 78 221 0 6 642 999 94 0 0 chr5 7565873 7566011 -144971248 + B1_Mm SINE Alu 9 146 -1 6 642 202 186 47 0 chr5 7566897 7566940 -144970319 + (CATG)n Simple_repeat Simple_repeat 3 47 0 6 642 277 345 42 33 chr5 7566964 7567084 -144970175 + B1_Mur4 SINE Alu 5 125 -25 7 642 387 314 10 0 chr5 7566983 7567085 -144970174 + ID_B1 SINE B4 102 204 -20 7 642 540 0 0 0 chr5 7567162 7567222 -144970037 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 642 294 111 16 0 chr5 7567308 7567371 -144969888 - RMER1B Other Other 0 1066 1003 7 642 338 255 0 50 chr5 7567366 7567465 -144969794 - RMER1B Other Other -795 271 178 7 642 210 192 19 0 chr5 7567540 7567592 -144969667 + T-rich Low_complexity Low_complexity 5 57 0 7 642 352 239 21 14 chr5 7567593 7567733 -144969526 - Lx9 LINE L1 -8 7636 7496 7 642 273 29 0 0 chr5 7567794 7567828 -144969431 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 642 33436 66 3 1 chr5 7567892 7573920 -144963339 - L1Md_F2 LINE L1 -13 6569 531 7 642 382 268 0 0 chr5 7573921 7574003 -144963256 - Lx9 LINE L1 -1128 6516 6435 7 642 4411 195 32 14 chr5 7574132 7575049 -144962210 - Lx5 LINE L1 0 7050 6118 7 642 308 197 48 55 chr5 7575125 7575270 -144961989 - Lx9 LINE L1 -1331 6313 6170 7 642 505 249 182 13 chr5 7575752 7575960 -144961299 - B4A SINE B4 -52 240 3 8 642 23 33 0 0 chr5 7575969 7575999 -144961260 + AT_rich Low_complexity Low_complexity 1 30 0 8 642 402 69 0 0 chr5 7576048 7576106 -144961153 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 642 1216 283 81 37 chr5 7576196 7576284 -144960975 + L1MC3 LINE L1 6909 7003 -782 8 642 340 0 0 0 chr5 7576284 7576330 -144960929 + L1Md_T LINE L1 6535 6580 -2 8 642 1216 283 81 37 chr5 7576330 7577079 -144960180 + L1MC3 LINE L1 7004 7783 -2 8 642 442 361 31 57 chr5 7577125 7577184 -144960075 + B4A SINE B4 54 104 -188 8 642 621 66 0 0 chr5 7577184 7577275 -144959984 + (CA)n Simple_repeat Simple_repeat 2 92 0 8 642 442 361 31 57 chr5 7577275 7577444 -144959815 + B4A SINE B4 105 276 -16 8 642 1044 205 34 30 chr5 7578138 7578180 -144959079 - B2_Mm2 SINE B2 -4 212 166 8 642 536 40 13 0 chr5 7578180 7578255 -144959004 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 8 642 1044 174 11 16 chr5 7578255 7578420 -144958839 - B2_Mm2 SINE B2 -30 165 3 8 642 318 350 0 79 chr5 7579773 7579925 -144957334 - RLTR18 LTR ERVK -157 459 320 8 642 535 328 56 72 chr5 7579976 7580205 -144957054 - RLTR18 LTR ERVK -302 314 98 8 642 360 0 0 0 chr5 7580205 7580245 -144957014 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 642 535 328 56 72 chr5 7580245 7580334 -144956925 - RLTR18 LTR ERVK -519 97 1 8 642 1413 291 64 23 chr5 7580371 7580852 -144956407 + RCHARR1 DNA MER1_type 1 501 -473 9 642 25 0 0 0 chr5 7581242 7581267 -144955992 + AT_rich Low_complexity Low_complexity 1 25 0 9 642 2291 41 0 14 chr5 7581886 7582182 -144955077 + L1_Mus2 LINE L1 5933 6224 -342 9 642 1009 95 1 7 chr5 7582182 7582349 -144954910 + L1_Mus1 LINE L1 6420 6583 -1 9 642 2733 65 0 6 chr5 7582349 7582733 -144954526 + L1_Mus2 LINE L1 6211 6566 0 9 642 2778 77 13 3 chr5 7582758 7583147 -144954112 + L1_Mus3 LINE L1 6244 6636 -2 9 642 366 23 0 0 chr5 7584264 7584307 -144952952 + (A)n Simple_repeat Simple_repeat 1 43 0 9 642 240 374 55 70 chr5 7584319 7584520 -144952739 - RMER13A LTR ERVK -93 815 618 9 642 900 292 75 73 chr5 7584533 7584577 -144952682 - RMER13A LTR ERVK -392 468 425 9 642 4533 85 14 138 chr5 7584577 7585434 -144951825 - RMER17A LTR ERVK 0 751 1 9 642 900 292 75 73 chr5 7585434 7585855 -144951404 - RMER13A LTR ERVK -436 424 2 9 642 1988 135 22 0 chr5 7586051 7586363 -144950896 - ORR1A2 LTR MaLR -8 319 1 1 642 10028 128 118 12 chr5 7586365 7588128 -144949131 - ORR1A2-int LTR MaLR 0 1963 15 1 642 2076 130 12 6 chr5 7588128 7588453 -144948806 - ORR1A2 LTR MaLR 0 327 1 1 642 783 121 0 0 chr5 7588478 7588594 -144948665 - B2_Mm2 SINE B2 -79 116 1 1 642 271 281 107 67 chr5 7588697 7589025 -144948234 + L1ME2z LINE L1 5810 6150 -294 1 642 1672 225 95 56 chr5 7590674 7591338 -144945921 + RMER6C LTR ERVK 1 690 0 1 642 717 355 115 29 chr5 7593088 7593594 -144943665 + MLT1F2 LTR MaLR 1 567 -2 1 642 724 259 49 39 chr5 7593660 7593865 -144943394 + B3 SINE B2 1 207 -9 1 642 254 286 28 70 chr5 7594938 7595081 -144942178 - L2 LINE L2 -2570 849 713 1 642 220 338 182 51 chr5 7595350 7595620 -144941639 + L2a LINE L2 2221 2545 -874 1 642 405 0 0 0 chr5 7595620 7595665 -144941594 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 642 220 338 182 51 chr5 7595665 7595851 -144941408 + L2a LINE L2 2546 2764 -655 1 642 861 103 0 0 chr5 7595851 7595977 -144941282 + (TTTTC)n Simple_repeat Simple_repeat 4 129 0 1 642 220 338 182 51 chr5 7595977 7596183 -144941076 + L2a LINE L2 2765 2971 -448 1 642 185 353 33 16 chr5 7596203 7596324 -144940935 + L2a LINE L2 3026 3148 -278 1 642 240 295 72 65 chr5 7598319 7598457 -144938802 - MIRb SINE MIR 0 268 130 1 642 1456 228 94 39 chr5 7598566 7599054 -144938205 + Lx9 LINE L1 6982 7496 -148 1 642 721 295 79 49 chr5 7599196 7599383 -144937876 - MER58B DNA MER1_type -1 340 137 1 642 1870 153 148 0 chr5 7599383 7599748 -144937511 + MTC LTR MaLR 1 419 -2 1 642 721 295 79 49 chr5 7599748 7599888 -144937371 - MER58B DNA MER1_type -205 136 3 1 642 241 269 26 61 chr5 7600564 7600679 -144936580 + L2 LINE L2 1431 1541 -1878 1 80 869 276 27 54 chr5 7602049 7602309 -144934950 + MTEb LTR MaLR 127 379 0 1 643 21226 92 31 14 chr5 7602408 7603793 -144933466 - L1_Mur1 LINE L1 -1158 4728 3307 1 643 297 0 0 0 chr5 7603793 7603826 -144933433 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 643 21226 102 54 14 chr5 7603826 7606499 -144930760 - L1_Mur1 LINE L1 -2580 3306 510 1 643 475 206 138 84 chr5 7606499 7606738 -144930521 - L1_Mur1 LINE L1 -6627 357 106 1 643 340 49 66 0 chr5 7607950 7608011 -144929248 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 1 643 324 0 0 0 chr5 7608013 7608049 -144929210 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 643 2826 63 47 0 chr5 7608525 7608907 -144928352 - MTB LTR MaLR 0 400 1 1 643 24 0 0 0 chr5 7608989 7609013 -144928246 + AT_rich Low_complexity Low_complexity 1 24 0 1 643 719 297 173 94 chr5 7609404 7609947 -144927312 - RLTR18 LTR ERVK -27 589 4 1 643 22 0 0 0 chr5 7610099 7610121 -144927138 + AT_rich Low_complexity Low_complexity 1 22 0 1 643 24 32 0 0 chr5 7610829 7610860 -144926399 + AT_rich Low_complexity Low_complexity 1 31 0 1 643 1414 122 14 5 chr5 7610948 7611170 -144926089 - URR1A DNA MER1_type -2 224 1 1 643 866 374 35 43 chr5 7611170 7611682 -144925577 - MT2A LTR ERVL -16 517 10 1 643 264 21 83 0 chr5 7613501 7613549 -144923710 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 1 643 443 150 125 0 chr5 7613567 7613647 -144923612 - URR1B DNA MER1_type 0 225 136 1 643 1943 109 49 65 chr5 7613647 7613971 -144923288 + ORR1A2 LTR MaLR 1 319 -8 1 643 877 149 7 7 chr5 7613973 7614115 -144923144 - URR1B DNA MER1_type -83 142 1 1 643 407 309 49 35 chr5 7614115 7614253 -144923006 - MLT1C LTR MaLR -294 173 34 1 643 36518 50 1 3 chr5 7615364 7622592 -144914667 - L1Md_T LINE L1 0 6585 1 1 643 2936 269 35 58 chr5 7622951 7624023 -144913236 + RMER1C Other Other 371 1340 -2 1 643 330 289 36 0 chr5 7624305 7624388 -144912871 + Tigger7 DNA MER2_type 7 92 -2399 1 643 378 330 165 0 chr5 7624390 7624590 -144912669 + Tigger7 DNA MER2_type 2258 2490 -1 1 643 2019 136 39 0 chr5 7626014 7626376 -144910883 - Lx5 LINE L1 -1393 5657 5282 1 643 1829 112 36 11 chr5 7626376 7626656 -144910603 + L1Md_F2 LINE L1 6284 6570 -12 1 643 311 293 58 33 chr5 7626982 7627102 -144910157 - MIRb SINE MIR -124 144 22 1 643 292 389 128 0 chr5 7627175 7627324 -144909935 + B4A SINE B4 1 168 -124 1 643 291 360 60 32 chr5 7627366 7627650 -144909609 + B4A SINE B4 1 292 0 1 643 24 0 0 0 chr5 7627683 7627707 -144909552 + AT_rich Low_complexity Low_complexity 1 24 0 1 643 489 58 0 0 chr5 7627811 7627880 -144909379 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 643 3125 96 22 0 chr5 7628092 7628552 -144908707 - L1_Mm LINE L1 -73 5810 5341 1 643 3376 87 11 2 chr5 7628552 7629023 -144908236 + L1_Mus3 LINE L1 6156 6630 -8 1 643 238 302 23 0 chr5 7631010 7631096 -144906163 + MER104 DNA Tc2 93 180 -1 1 643 1097 294 28 8 chr5 7631743 7632121 -144905138 - Lx5 LINE L1 -738 6722 6119 1 643 795 219 115 24 chr5 7632176 7632429 -144904830 + RMER4B LTR ERVK 17 292 -293 1 643 319 250 42 127 chr5 7632451 7632616 -144904643 + RMER4B LTR ERVK 421 571 -14 1 643 392 228 4 110 chr5 7632640 7632867 -144904392 - Lx5 LINE L1 -938 6112 5910 1 643 1668 260 71 23 chr5 7632881 7633024 -144904235 + Lx5 LINE L1 6498 6647 -403 1 643 261 0 0 0 chr5 7633024 7633053 -144904206 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 643 1668 260 71 23 chr5 7633053 7633429 -144903830 + Lx5 LINE L1 6648 7041 -9 1 643 360 0 0 0 chr5 7633804 7633844 -144903415 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 643 235 309 135 14 chr5 7634041 7634182 -144903077 + MIR SINE MIR 90 247 -15 1 643 16241 164 166 25 chr5 7635451 7637772 -144899487 + Lx3C LINE L1 1183 4199 -1687 1 643 297 0 0 0 chr5 7637772 7637805 -144899454 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 643 16241 164 178 27 chr5 7637805 7638353 -144898906 + Lx3C LINE L1 4200 4738 -1148 1 643 7424 58 1 0 chr5 7638353 7639279 -144897980 + L1Md_F2 LINE L1 5650 6576 -6 1 643 16241 154 105 16 chr5 7639279 7640888 -144896371 + Lx3C LINE L1 4739 6277 -699 1 643 8387 110 10 2 chr5 7640882 7642925 -144894334 + L1_Mus3 LINE L1 4579 6634 -4 1 643 210 71 0 0 chr5 7644961 7644989 -144892270 + (GAA)n Simple_repeat Simple_repeat 2 29 0 1 643 310 327 92 32 chr5 7644989 7645207 -144892052 - MIR SINE MIR -3 259 29 1 643 264 382 0 0 chr5 7645356 7645432 -144891827 + RSINE1 SINE B4 6 81 -84 1 643 190 311 26 94 chr5 7645442 7645559 -144891700 + MIRb SINE MIR 121 229 -39 1 643 1778 154 28 79 chr5 7645749 7646180 -144891079 - RLTR9E LTR ERVK 0 409 1 1 643 267 303 128 0 chr5 7646360 7646469 -144890790 - MLT1B LTR MaLR -258 132 10 1 643 7067 97 11 5 chr5 7646505 7647717 -144889542 + L1_Mus4 LINE L1 5412 6630 -6 1 643 30 45 0 0 chr5 7647921 7647965 -144889294 + AT_rich Low_complexity Low_complexity 1 44 0 1 643 22 35 0 0 chr5 7648033 7648062 -144889197 + AT_rich Low_complexity Low_complexity 1 29 0 1 643 459 0 0 0 chr5 7650667 7650718 -144886541 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 643 188 338 0 0 chr5 7650961 7651032 -144886227 - MIR SINE MIR -46 216 146 1 643 948 275 168 17 chr5 7651109 7651160 -144886099 + Lx9 LINE L1 6458 6504 -1140 1 643 2128 112 38 0 chr5 7651160 7651474 -144885785 + ORR1A3 LTR MaLR 1 326 0 1 643 948 275 168 17 chr5 7651474 7651833 -144885426 + Lx9 LINE L1 6505 6930 -714 1 643 204 88 0 56 chr5 7651833 7651869 -144885390 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 643 2333 218 29 60 chr5 7651871 7652468 -144884791 - Lx5 LINE L1 -1 7049 6472 1 643 1078 303 46 36 chr5 7652498 7653022 -144884237 + Lx9 LINE L1 6933 7461 -183 1 643 227 96 36 55 chr5 7653201 7653256 -144884003 + A-rich Low_complexity Low_complexity 1 54 0 1 643 27 87 0 0 chr5 7653294 7653363 -144883896 + AT_rich Low_complexity Low_complexity 1 69 0 1 643 209 208 14 0 chr5 7653365 7653437 -144883822 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 643 271 210 50 0 chr5 7653440 7653540 -144883719 + Lx9 LINE L1 7464 7568 -76 1 643 2954 156 57 14 chr5 7654413 7654695 -144882564 - Lx5 LINE L1 -583 6467 6180 1 643 270 0 0 0 chr5 7654695 7654725 -144882534 + (C)n Simple_repeat Simple_repeat 1 30 0 1 643 2954 156 57 14 chr5 7654725 7655026 -144882233 - Lx5 LINE L1 -871 6179 5861 1 643 912 133 0 0 chr5 7655989 7656169 -144881090 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 643 2663 144 9 1 chr5 7656189 7656651 -144880608 - Lx2B LINE L1 -862 6138 5698 1 643 7283 149 47 10 chr5 7657659 7659170 -144878089 + Lx2 LINE L1 5434 6995 -2 1 643 303 28 0 0 chr5 7659175 7659211 -144878048 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 643 207 114 0 28 chr5 7659332 7659368 -144877891 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1 643 342 0 0 0 chr5 7659381 7659419 -144877840 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 643 250 342 60 30 chr5 7659465 7659700 -144877559 - RLTR15 LTR ERVK -32 327 86 1 643 362 330 62 33 chr5 7659675 7659885 -144877374 - RLTR12B LTR ERVK -308 220 5 1 643 610 291 25 0 chr5 7659862 7660023 -144877236 - B3A SINE B2 -47 169 2 1 643 509 255 139 19 chr5 7660175 7660391 -144876868 + Lx7 LINE L1 7080 7321 -375 1 643 255 204 28 46 chr5 7660392 7660500 -144876759 + T-rich Low_complexity Low_complexity 2 107 0 1 643 28 0 0 0 chr5 7660588 7660616 -144876643 + AT_rich Low_complexity Low_complexity 1 28 0 1 643 230 428 36 67 chr5 7660796 7661019 -144876240 + MamGypLTR2c LTR Gypsy 315 530 -538 1 643 483 332 123 37 chr5 7662057 7662326 -144874933 + RMER15 LTR ERVL 273 564 -11 1 643 227 325 24 8 chr5 7662346 7662470 -144874789 + GA-rich Low_complexity Low_complexity 3 128 0 1 643 301 228 154 29 chr5 7663036 7663140 -144874119 + PB1D10 SINE Alu 1 117 0 1 643 328 281 93 37 chr5 7663476 7663510 -144873749 - PB1D10 SINE Alu -4 113 6 1 643 374 235 0 0 chr5 7663510 7663578 -144873681 - ID_B1 SINE B4 -70 154 87 1 643 506 138 8 0 chr5 7664630 7664753 -144872506 + (CAGAGA)n Simple_repeat Simple_repeat 4 127 0 1 643 1199 91 0 6 chr5 7664753 7664929 -144872330 + (GAGAA)n Simple_repeat Simple_repeat 2 176 0 1 643 185 0 0 39 chr5 7664984 7665010 -144872249 + (CCTA)n Simple_repeat Simple_repeat 3 27 0 1 643 285 221 0 0 chr5 7665215 7665283 -144871976 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 643 35817 34 2 3 chr5 7667264 7672226 -144865033 + L1Md_T LINE L1 631 5586 -297 1 643 8270 38 1 0 chr5 7672226 7673221 -144864038 + L1Md_T LINE L1 5587 6582 0 1 643 574 318 38 51 chr5 7673790 7674082 -144863177 + B4A SINE B4 4 291 -1 1 643 5211 116 33 11 chr5 7674123 7674962 -144862297 - Lx2 LINE L1 0 6997 6140 1 643 243 0 0 0 chr5 7675324 7675351 -144861908 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 643 270 238 122 52 chr5 7675352 7675622 -144861637 + L1MC5 LINE L1 7461 7749 -212 2 643 1116 63 12 6 chr5 7675970 7676130 -144861129 - L1_Mus3 LINE L1 -3 6635 6475 2 643 251 304 83 42 chr5 7676243 7676363 -144860896 + MER70A LTR ERVL 52 176 -402 2 643 414 392 126 0 chr5 7676439 7676694 -144860565 + MER70A LTR ERVL 185 471 -1 2 643 574 294 68 129 chr5 7678387 7678978 -144858281 + RMER13A LTR ERVK 1 599 -28 2 643 410 285 116 6 chr5 7679577 7679750 -144857509 - MTEb LTR MaLR -12 367 176 2 643 1527 288 89 31 chr5 7679732 7680251 -144857008 - MTE-int LTR MaLR -401 1179 631 2 643 320 296 0 0 chr5 7680311 7680399 -144856860 - MTE-int LTR MaLR -322 1258 1171 2 643 258 81 0 0 chr5 7680523 7680560 -144856699 + (A)n Simple_repeat Simple_repeat 1 37 0 2 643 246 32 0 0 chr5 7680570 7680601 -144856658 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 643 32741 85 3 8 chr5 7681457 7687675 -144849584 - L1Md_F2 LINE L1 -2 6580 397 2 643 474 101 0 0 chr5 7687686 7687755 -144849504 + (T)n Simple_repeat Simple_repeat 1 69 0 2 643 8305 42 5 0 chr5 7687767 7688858 -144848401 - L1Md_F3 LINE L1 0 6584 5489 2 643 23 0 0 0 chr5 7689348 7689371 -144847888 + AT_rich Low_complexity Low_complexity 1 23 0 2 643 12413 98 30 12 chr5 7689524 7689913 -144847346 - L1VL2 LINE L1 -626 2989 2601 2 643 251 0 100 20 chr5 7689913 7689963 -144847296 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 2 643 12413 101 20 12 chr5 7689963 7692482 -144844777 - L1VL2 LINE L1 -1015 2600 56 2 643 21 36 0 0 chr5 7692704 7692732 -144844527 + AT_rich Low_complexity Low_complexity 1 28 0 2 643 672 13 0 0 chr5 7693656 7693733 -144843526 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 643 1109 335 103 55 chr5 7693786 7694491 -144842768 + MER54B LTR ERVL 49 787 -6 2 643 270 0 0 0 chr5 7694895 7694925 -144842334 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 643 297 0 0 0 chr5 7695022 7695055 -144842204 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 643 3107 235 25 40 chr5 7695283 7696155 -144841104 + L1VL4 LINE L1 131 989 -5313 2 643 24026 136 22 9 chr5 7696170 7697646 -144839613 + L1_Mus3 LINE L1 1715 3201 -2682 2 643 245 27 54 0 chr5 7697646 7697683 -144839576 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 643 24026 135 20 13 chr5 7697683 7701030 -144836229 + L1_Mus3 LINE L1 3202 6582 0 2 643 1311 176 181 25 chr5 7702955 7703276 -144833983 + ORR1C1 LTR MaLR 1 371 -7 2 643 432 0 0 0 chr5 7704327 7704375 -144832884 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 643 1223 230 10 38 chr5 7704573 7704866 -144832393 - RLTR12B LTR ERVK -7 521 237 2 643 1379 169 25 62 chr5 7704873 7705191 -144832068 - RLTR12B LTR ERVK -253 315 2 2 643 5566 55 3 3 chr5 7705844 7706544 -144830715 + L1Md_F2 LINE L1 5870 6569 -13 2 643 240 186 0 0 chr5 7708089 7708132 -144829127 + Lx7 LINE L1 7266 7308 -388 2 643 486 0 0 0 chr5 7708138 7708192 -144829067 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 643 860 144 73 28 chr5 7708665 7708844 -144828415 - B2_Mm2 SINE B2 -8 187 1 2 643 3124 99 2 0 chr5 7708887 7709333 -144827926 + Lx3A LINE L1 6534 6980 -1 2 643 3117 260 72 70 chr5 7709345 7710008 -144827251 - L1_Rod LINE L1 -462 5385 4724 2 643 1735 145 12 56 chr5 7710008 7710345 -144826914 - RLTRETN_Mm LTR ERVK 0 322 1 2 643 3117 260 72 70 chr5 7710345 7711131 -144826128 - L1_Rod LINE L1 -1124 4723 3935 2 643 686 64 27 0 chr5 7712482 7712592 -144824667 + L1_Mus4 LINE L1 6517 6629 -7 2 643 445 280 54 18 chr5 7712710 7712877 -144824382 + MER58B DNA MER1_type 131 303 -38 2 643 427 334 53 56 chr5 7713911 7714201 -144823058 + B4A SINE B4 6 276 -16 2 643 315 0 0 0 chr5 7714211 7714246 -144823013 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 643 532 252 128 7 chr5 7714259 7714407 -144822852 + ORR1D2 LTR MaLR 2 167 -203 2 643 374 134 0 15 chr5 7714412 7714480 -144822779 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 2 643 270 0 0 0 chr5 7714534 7714564 -144822695 + (TATG)n Simple_repeat Simple_repeat 1 30 0 2 643 654 13 0 0 chr5 7714565 7714640 -144822619 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2 643 630 234 22 45 chr5 7714660 7714839 -144822420 + ORR1D2 LTR MaLR 196 370 0 2 643 252 359 13 0 chr5 7714885 7714963 -144822296 + ID4 SINE ID 5 83 0 2 643 1339 302 46 24 chr5 7715007 7715080 -144822179 + Lx8 LINE L1 6127 6210 -1263 2 643 563 92 11 0 chr5 7715080 7715167 -144822092 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 2 643 1339 302 46 24 chr5 7715167 7715635 -144821624 + Lx8 LINE L1 6211 6680 -793 2 643 498 248 217 9 chr5 7715653 7715865 -144821394 + Lx8 LINE L1 7212 7467 -6 2 643 2702 99 5 0 chr5 7715854 7716258 -144821001 - MusHAL1 LINE L1 -730 1982 1577 2 643 1170 99 5 51 chr5 7716259 7716473 -144820786 + Lx LINE L1 6449 6652 -2 2 643 481 314 52 17 chr5 7717243 7717488 -144819771 - MIR SINE MIR -7 255 20 2 643 270 0 0 0 chr5 7717527 7717557 -144819702 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 2 643 419 116 31 10 chr5 7717662 7717758 -144819501 - Lx2A LINE L1 -13 6995 6898 2 643 1212 273 15 80 chr5 7719110 7719500 -144817759 - MTE2a LTR MaLR -14 365 1 2 643 456 252 43 0 chr5 7719830 7719945 -144817314 + PB1D7 SINE Alu 1 120 0 2 643 252 59 0 0 chr5 7721081 7721115 -144816144 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2 643 261 370 117 0 chr5 7721178 7721332 -144815927 - MER5A DNA MER1_type 0 189 18 2 643 29 60 0 0 chr5 7722368 7722418 -144814841 + AT_rich Low_complexity Low_complexity 1 50 0 2 643 453 319 31 18 chr5 7723023 7723186 -144814073 + RSINE1 SINE B4 1 165 0 2 643 425 83 0 0 chr5 7723206 7723266 -144813993 - L1_Mur1 LINE L1 -357 5529 5470 2 643 357 106 2 0 chr5 7723271 7723328 -144813931 + L1_Mus1 LINE L1 5504 5585 -655 2 643 2318 136 17 41 chr5 7723333 7723746 -144813513 - RLTR9D LTR ERVK 0 403 1 2 643 7143 74 8 5 chr5 7723750 7724752 -144812507 + L1_Mus1 LINE L1 5587 6565 -2 2 643 902 342 65 76 chr5 7724919 7725486 -144811773 - MER21B LTR ERV1 -107 756 196 2 643 632 261 47 12 chr5 7725492 7725771 -144811488 - ORR1D2 LTR MaLR 0 370 34 2 643 1754 192 32 63 chr5 7725849 7726227 -144811032 + ORR1B2 LTR MaLR 1 366 -1 2 643 2794 239 79 20 chr5 7726509 7727308 -144809951 - RCHARR1 DNA MER1_type -5 969 124 2 643 569 300 141 59 chr5 7727363 7727618 -144809641 - B4 SINE B4 -11 281 6 2 643 303 304 11 11 chr5 7727617 7727710 -144809549 - RCHARR1 DNA MER1_type -833 141 49 2 643 563 206 7 7 chr5 7727736 7727878 -144809381 + L1Md_T LINE L1 6439 6580 -2 2 643 23029 168 55 45 chr5 7727897 7728905 -144808354 + L1_Mus1 LINE L1 415 1347 -4536 2 643 1332 35 6 0 chr5 7728905 7729076 -144808183 + L1Md_F2 LINE L1 6399 6570 -12 2 643 23029 113 16 168 chr5 7729076 7732395 -144804864 + L1_Mus1 LINE L1 1348 4702 -1181 2 643 2125 224 138 75 chr5 7732395 7733094 -144804165 + RLTR13D6 LTR ERVK 1 748 -154 2 80 3073 42 16 3 chr5 7733094 7733480 -144803779 + L1Md_F3 LINE L1 6180 6570 -14 2 644 2125 220 24 39 chr5 7733480 7733623 -144803636 + RLTR13D6 LTR ERVK 659 856 -46 2 644 23029 90 12 86 chr5 7733623 7735458 -144801801 + L1_Mus1 LINE L1 4703 6567 0 2 644 6074 119 0 2 chr5 7735449 7736399 -144800860 + L1_Mm LINE L1 4628 5575 -308 2 644 957 60 45 0 chr5 7736400 7736586 -144800673 + L1_Mus1 LINE L1 6429 6567 0 2 644 337 209 44 75 chr5 7737582 7737742 -144799517 - L1ME4a LINE L1 0 6124 5970 2 644 383 338 7 26 chr5 7738215 7738370 -144798889 + RSINE1 SINE B4 14 165 0 2 644 4314 67 1 0 chr5 7739121 7739981 -144797278 - L1_Mus1 LINE L1 -411 6156 5296 2 644 839 19 0 19 chr5 7740017 7740123 -144797136 + (GAA)n Simple_repeat Simple_repeat 3 106 0 2 644 2149 181 2 8 chr5 7740367 7740762 -144796497 + Lx LINE L1 6259 6651 -3 2 644 552 250 19 45 chr5 7741072 7741227 -144796032 - RSINE1 SINE B4 -6 159 9 2 644 198 351 0 0 chr5 7741473 7741530 -144795729 - L2a LINE L2 -266 3160 3104 2 644 525 219 15 30 chr5 7741647 7741779 -144795480 + ORR1D1 LTR MaLR 112 241 -133 2 644 512 238 26 13 chr5 7741757 7741908 -144795351 + ORR1D1 LTR MaLR 173 327 -51 2 644 240 339 124 43 chr5 7741956 7742165 -144795094 - L2a LINE L2 -652 2767 2539 2 644 899 159 10 69 chr5 7742165 7742368 -144794891 + L1_Mus2 LINE L1 6375 6565 -1 2 644 240 339 124 43 chr5 7742368 7742392 -144794867 - L2a LINE L2 -881 2538 2515 2 644 411 325 162 12 chr5 7742550 7742896 -144794363 - L2a LINE L2 -1157 2262 1865 2 644 510 17 0 0 chr5 7742989 7743048 -144794211 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 644 239 269 90 0 chr5 7743161 7743228 -144794031 - PB1D10 SINE Alu -31 86 14 2 644 4579 162 13 10 chr5 7744021 7744969 -144792290 - Lx5 LINE L1 -1105 5945 4987 2 644 246 239 3 28 chr5 7745005 7745103 -144792156 + L1_Mur1 LINE L1 688 853 -6129 2 644 1048 194 104 0 chr5 7745100 7745322 -144791937 + Lx2B LINE L1 6675 6919 -81 2 644 3566 218 49 83 chr5 7745322 7746313 -144790946 + RMER17B LTR ERVK 1 958 0 2 644 473 78 39 0 chr5 7746322 7746399 -144790860 + Lx2B LINE L1 6917 6996 -4 2 644 2052 152 49 0 chr5 7746413 7746822 -144790437 - Lx5 LINE L1 -876 5001 4573 2 644 7135 62 30 0 chr5 7746832 7747817 -144789442 - L1_Mus1 LINE L1 -2 6565 5554 2 644 925 215 43 17 chr5 7747862 7748094 -144789165 + Lx5 LINE L1 6810 7047 -3 2 644 1483 190 31 14 chr5 7748631 7748925 -144788334 + ORR1D1 LTR MaLR 23 321 -53 2 644 6403 65 5 9 chr5 7749182 7750063 -144787196 - L1Md_F2 LINE L1 -1 6581 5705 2 644 3227 38 130 5 chr5 7751574 7751996 -144785263 - IAPLTR2_Mm LTR ERVK 0 475 1 2 644 6675 35 4 0 chr5 7751998 7752824 -144784435 - IAPEz-int LTR ERVK -2 6479 5651 2 644 2533 70 0 3 chr5 7752817 7753160 -144784099 - IAPEz-int LTR ERVK -4781 1700 1359 2 644 3392 61 4 16 chr5 7753160 7753738 -144783521 - IAPEz-int LTR ERVK -5819 662 168 2 644 226 321 0 0 chr5 7753738 7753791 -144783468 - RLTR27 LTR ERVK -34 275 223 2 644 226 321 0 0 chr5 7753819 7753872 -144783387 - RLTR27 LTR ERVK -34 275 223 2 644 966 110 25 81 chr5 7753872 7754070 -144783189 - IAPEz-int LTR ERVK -6286 195 9 2 644 3227 38 130 5 chr5 7754071 7754493 -144782766 - IAPLTR2_Mm LTR ERVK 0 475 1 2 644 450 0 0 0 chr5 7754722 7754772 -144782487 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 2 644 2625 189 13 13 chr5 7754791 7755369 -144781890 - Lx2B LINE L1 0 7058 6023 2 644 2830 128 139 12 chr5 7755370 7755886 -144781373 + RMER17A2 LTR ERVK 1 582 -324 2 644 31576 88 25 2 chr5 7755886 7762049 -144775210 - L1Md_F2 LINE L1 0 6582 307 2 644 1838 169 31 9 chr5 7762051 7762374 -144774885 + RMER17A2 LTR ERVK 573 902 -4 2 644 3355 190 55 15 chr5 7762381 7763535 -144773724 - Lx2B LINE L1 -633 6367 5170 2 644 4353 148 21 5 chr5 7763536 7764355 -144772904 + L1_Mur2 LINE L1 3455 4286 -1591 2 644 396 407 43 29 chr5 7764653 7764934 -144772325 - B4A SINE B4 -6 286 2 3 644 21 0 0 0 chr5 7765526 7765547 -144771712 + AT_rich Low_complexity Low_complexity 1 21 0 3 644 34780 38 2 9 chr5 7766416 7771622 -144765637 + L1Md_F2 LINE L1 422 5586 -297 3 644 7680 59 1 25 chr5 7771623 7772642 -144764617 + L1Md_F2 LINE L1 5588 6582 0 3 644 25 83 0 0 chr5 7772778 7772838 -144764421 + AT_rich Low_complexity Low_complexity 1 60 0 3 644 245 252 96 35 chr5 7773469 7773584 -144763675 + Lx7 LINE L1 5795 5916 -1780 3 644 1253 300 18 8 chr5 7773613 7773993 -144763266 + Lx8 LINE L1 6536 6919 -554 3 644 4383 84 0 2 chr5 7773996 7774627 -144762632 - L1Md_F2 LINE L1 -1146 4737 4108 3 644 6367 58 5 0 chr5 7774624 7775469 -144761790 + L1Md_F2 LINE L1 4737 5585 -298 3 644 7134 64 45 19 chr5 7775470 7776428 -144760831 + L1Md_F2 LINE L1 5587 6569 -13 3 644 1529 295 25 31 chr5 7776429 7776978 -144760281 + Lx8 LINE L1 6921 7466 -7 3 644 22 70 0 0 chr5 7776989 7777032 -144760227 + AT_rich Low_complexity Low_complexity 1 43 0 3 644 759 292 10 5 chr5 7777352 7777555 -144759704 - B3 SINE B2 -12 204 1 3 644 387 105 0 0 chr5 7778223 7778280 -144758979 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 644 240 35 0 0 chr5 7778384 7778413 -144758846 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 644 276 30 0 0 chr5 7778607 7778640 -144758619 + (TGG)n Simple_repeat Simple_repeat 3 35 0 3 644 236 79 0 26 chr5 7778659 7778698 -144758561 + MTC-int LTR MaLR 172 209 -1049 3 644 628 288 84 0 chr5 7778723 7778914 -144758345 - MTE-int LTR MaLR -1371 209 3 3 644 307 228 5 2 chr5 7779568 7779645 -144757614 + L1MB8 LINE L1 5534 5611 -733 3 644 360 304 78 21 chr5 7779653 7779895 -144757364 + L1MA5 LINE L1 6035 6290 -10 3 644 390 235 89 31 chr5 7779970 7780194 -144757065 + L1MB8 LINE L1 5652 5888 -290 3 644 1053 269 30 66 chr5 7780238 7780332 -144756927 + B4 SINE B4 2 96 -196 3 644 1116 198 214 119 chr5 7780332 7780378 -144756881 - MT2A LTR ERVL 0 533 488 3 644 608 0 14 0 chr5 7780378 7780450 -144756809 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 3 644 1116 198 214 119 chr5 7780450 7780890 -144756369 - MT2A LTR ERVL -46 487 2 3 644 1053 269 30 66 chr5 7780890 7781097 -144756162 + B4 SINE B4 97 292 0 3 644 571 106 11 0 chr5 7782819 7782913 -144754346 + Lx2 LINE L1 6884 6978 -19 3 644 268 216 307 0 chr5 7784383 7784471 -144752788 + PB1D10 SINE Alu 1 115 -2 3 644 197 0 71 0 chr5 7784472 7784500 -144752759 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 3 644 641 222 181 33 chr5 7784748 7784958 -144752301 + RLTR14 LTR ERV1 1 241 -141 3 644 522 152 0 0 chr5 7784959 7785051 -144752208 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 644 517 319 85 53 chr5 7785662 7786039 -144751220 + HAL1 LINE L1 1312 1700 -807 3 644 253 208 0 0 chr5 7786309 7786357 -144750902 - Lx2A1 LINE L1 -763 6245 6198 3 644 3072 193 71 0 chr5 7786363 7787037 -144750222 + Lx3C LINE L1 6253 6974 -2 3 644 4105 131 64 17 chr5 7787045 7787762 -144749497 - RMER6A LTR ERVK -5 751 1 3 644 347 296 0 43 chr5 7787893 7787985 -144749274 - MLT1I LTR MaLR -204 207 120 3 644 22 0 0 0 chr5 7788166 7788188 -144749071 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 223 312 184 21 chr5 7788672 7788813 -144748446 + L2a LINE L2 3263 3426 0 3 644 219 294 81 32 chr5 7789208 7789331 -144747928 + L2c LINE L2 3060 3188 -199 3 644 299 362 67 40 chr5 7789521 7789774 -144747485 + Charlie23a DNA MER1_type 74 333 -6 3 644 226 307 40 0 chr5 7790578 7790653 -144746606 + MIRb SINE MIR 99 176 -92 3 644 707 275 40 0 chr5 7791011 7791160 -144746099 + RSINE1 SINE B4 7 161 -4 3 644 663 25 0 0 chr5 7791577 7791658 -144745601 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 644 378 0 0 0 chr5 7791659 7791701 -144745558 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 644 19773 142 8 1 chr5 7792440 7795948 -144741311 - L1_Mm LINE L1 -1148 4735 1203 3 644 4526 140 65 35 chr5 7795940 7796863 -144740396 - L1VL1 LINE L1 -5513 928 1 3 644 907 281 65 23 chr5 7797021 7797283 -144739976 + B4A SINE B4 2 274 -18 3 644 239 319 10 81 chr5 7797250 7797349 -144739910 + B3 SINE B2 112 203 -13 3 644 30 27 0 0 chr5 7799379 7799416 -144737843 + AT_rich Low_complexity Low_complexity 1 37 0 3 644 820 235 91 0 chr5 7799433 7799620 -144737639 + B3 SINE B2 9 212 -4 3 644 425 301 45 20 chr5 7799773 7799955 -144737304 - MTEa LTR MaLR -1 378 183 3 644 295 282 50 25 chr5 7800025 7800185 -144737074 + L1MA9 LINE L1 5915 6078 -234 3 644 557 297 12 6 chr5 7800192 7800358 -144736901 - MTE2a LTR MaLR 0 379 213 3 644 838 284 11 64 chr5 7800351 7800615 -144736644 - MTE2a LTR MaLR -122 257 8 3 644 234 0 0 0 chr5 7802543 7802569 -144734690 + (CAA)n Simple_repeat Simple_repeat 1 26 0 3 644 234 204 0 0 chr5 7803585 7803634 -144733625 + L1MA9 LINE L1 6081 6129 -171 3 644 22 0 0 0 chr5 7804182 7804204 -144733055 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 295 179 55 28 chr5 7804204 7804370 -144732889 - Lx9 LINE L1 -9 7635 7425 3 644 526 292 20 20 chr5 7804366 7804565 -144732694 + Lx9 LINE L1 7168 7366 -278 3 644 36222 15 3 7 chr5 7804931 7810344 -144726915 + L1Md_A LINE L1 202 5586 -297 3 644 8788 18 0 0 chr5 7810344 7811340 -144725919 + L1Md_A LINE L1 5587 6582 0 3 644 308 267 0 0 chr5 7811393 7811468 -144725791 + Lx9 LINE L1 5856 5930 -1714 3 644 406 294 71 22 chr5 7811678 7811862 -144725397 + Lx9 LINE L1 6302 6494 -1150 3 644 29826 83 11 3 chr5 7811863 7816138 -144721121 + L1Md_F2 LINE L1 360 4646 -1237 3 644 2987 78 0 2 chr5 7816138 7816537 -144720722 + L1Md_F3 LINE L1 6186 6583 -1 3 644 29826 82 7 4 chr5 7816537 7817450 -144719809 + L1Md_F2 LINE L1 4647 5584 -299 3 644 8173 47 1 0 chr5 7817452 7818447 -144718812 + L1Md_F2 LINE L1 5587 6582 0 3 644 2033 293 68 39 chr5 7818457 7819381 -144717878 + Lx9 LINE L1 6483 7433 -211 3 644 281 24 0 47 chr5 7819405 7819448 -144717811 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 3 644 459 0 0 0 chr5 7819768 7819819 -144717440 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 644 306 312 46 102 chr5 7821193 7821376 -144715883 + L2c LINE L2 3182 3387 0 3 644 633 38 0 0 chr5 7822163 7822243 -144715016 + (TC)n Simple_repeat Simple_repeat 2 81 0 3 644 1111 190 183 3 chr5 7822582 7822749 -144714510 - Lx9 LINE L1 0 7644 7433 3 644 498 46 0 0 chr5 7822749 7822814 -144714445 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 644 1111 190 183 3 chr5 7822814 7822963 -144714296 - Lx9 LINE L1 -212 7432 7272 3 644 24 0 0 0 chr5 7822970 7822994 -144714265 + AT_rich Low_complexity Low_complexity 1 24 0 3 644 311 346 88 67 chr5 7823443 7823740 -144713519 + ORR1E LTR MaLR 52 354 -5 3 644 387 121 15 0 chr5 7824077 7824143 -144713116 + RMER1C Other Other 1045 1111 -231 3 644 894 99 0 0 chr5 7824178 7824309 -144712950 + (TTC)n Simple_repeat Simple_repeat 2 132 0 3 644 542 153 56 19 chr5 7824342 7824502 -144712757 + CT-rich Low_complexity Low_complexity 4 169 0 3 644 474 231 0 40 chr5 7824536 7824662 -144712597 + RMER1C Other Other 1202 1322 -20 3 644 2540 157 123 0 chr5 7825492 7825962 -144711297 + RLTR11A LTR ERVK 1 528 0 3 644 184 277 30 15 chr5 7826243 7826309 -144710950 + L4 LINE RTE 1960 2026 -3 3 644 2421 138 222 12 chr5 7826484 7826975 -144710284 - L1_Mus2 LINE L1 -247 5636 5043 3 644 6852 71 10 20 chr5 7826969 7827927 -144709332 + L1_Mus2 LINE L1 5618 6566 0 3 644 683 239 37 7 chr5 7827992 7828127 -144709132 + B1_Mur1 SINE Alu 8 146 -3 3 644 231 36 0 0 chr5 7828414 7828442 -144708817 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 644 207 0 0 0 chr5 7830456 7830479 -144706780 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 644 3472 138 17 6 chr5 7830479 7831019 -144706240 - Lx LINE L1 -8 6646 6101 3 644 298 209 60 0 chr5 7831288 7831355 -144705904 - ID4_ SINE ID -11 72 2 3 644 991 82 7 7 chr5 7831530 7831678 -144705581 + (TTC)n Simple_repeat Simple_repeat 2 149 0 3 644 339 258 46 23 chr5 7831741 7831872 -144705387 - L1MB2 LINE L1 -7 6164 6031 3 644 343 240 128 0 chr5 7831905 7832030 -144705229 + L1MA6 LINE L1 6152 6292 -8 3 644 521 312 75 19 chr5 7832590 7833054 -144704205 + L1MC4 LINE L1 6895 7384 -658 3 644 1110 315 27 8 chr5 7833084 7833558 -144703701 + Lx7 LINE L1 6818 7300 -396 3 644 470 317 27 5 chr5 7833832 7834054 -144703205 + L1MC4 LINE L1 7452 7678 -364 3 644 332 278 98 47 chr5 7834290 7834505 -144702754 - Lx8 LINE L1 -29 7444 7219 3 644 1286 277 87 3 chr5 7834521 7834901 -144702358 - MTD LTR MaLR 0 419 8 3 644 1489 284 97 64 chr5 7834904 7835723 -144701536 - MTD-int LTR MaLR 0 1258 314 3 644 357 227 15 112 chr5 7835778 7835912 -144701347 - MTD-int LTR MaLR -1123 135 15 3 644 450 29 44 0 chr5 7835936 7836004 -144701255 - L1Md_F2 LINE L1 0 6582 6512 3 644 22 0 0 0 chr5 7836882 7836904 -144700355 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 21 57 0 0 chr5 7836947 7836982 -144700277 + AT_rich Low_complexity Low_complexity 1 35 0 3 644 365 284 20 0 chr5 7836997 7837099 -144700160 + Lx8 LINE L1 6612 6715 -758 3 644 31434 74 12 10 chr5 7838229 7843436 -144693823 + L1Md_F2 LINE L1 366 5586 -297 3 644 7662 55 9 12 chr5 7843436 7844431 -144692828 + L1Md_F2 LINE L1 5587 6578 -4 3 644 1194 232 29 8 chr5 7844547 7844790 -144692469 - RMER13B LTR ERVK -38 870 623 3 644 1108 164 97 0 chr5 7844791 7844986 -144692273 - URR1B DNA MER1_type -11 214 1 3 644 356 264 128 64 chr5 7844986 7845027 -144692232 + CYRA11_Mm Unknown Y-chromosome 377 432 -185 3 644 925 77 8 0 chr5 7845333 7845463 -144691796 + B1_Mus1 SINE Alu 18 148 0 3 644 426 125 0 0 chr5 7845534 7845614 -144691645 + (A)n Simple_repeat Simple_repeat 1 80 0 3 644 783 178 11 6 chr5 7849560 7849735 -144687524 + GA-rich Low_complexity Low_complexity 2 177 0 3 644 1113 89 0 27 chr5 7849755 7849939 -144687320 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 3 644 1277 293 125 36 chr5 7849941 7850365 -144686894 - RMER15 LTR ERVL -1 574 99 3 644 2925 78 71 2 chr5 7850365 7850774 -144686485 - L1Md_F2 LINE L1 -8 6574 6138 3 644 1277 293 125 36 chr5 7850774 7850876 -144686383 - RMER15 LTR ERVL -477 98 1 3 644 870 144 27 20 chr5 7852057 7852206 -144685053 + B1_Mur4 SINE Alu 1 150 0 3 644 22 80 0 0 chr5 7852219 7852269 -144684990 + AT_rich Low_complexity Low_complexity 1 50 0 3 644 189 0 0 0 chr5 7852385 7852406 -144684853 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 644 38 39 0 0 chr5 7852487 7852539 -144684720 + AT_rich Low_complexity Low_complexity 1 52 0 3 644 1244 230 60 38 chr5 7852904 7853270 -144683989 + ORR1D1 LTR MaLR 1 374 0 3 644 186 43 0 0 chr5 7853857 7853880 -144683379 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 644 204 40 0 0 chr5 7853897 7853922 -144683337 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4 644 5781 61 5 7 chr5 7853924 7854670 -144682589 - L1Md_F2 LINE L1 -19 6563 5819 4 644 466 282 0 43 chr5 7854788 7854903 -144682356 + B1F2 SINE Alu 17 126 -23 4 644 368 294 29 10 chr5 7856123 7856226 -144681033 - PB1D10 SINE Alu -1 116 12 4 644 590 286 35 76 chr5 7856581 7856778 -144680481 - B3A SINE B2 -9 189 1 4 644 280 255 164 13 chr5 7858463 7858622 -144678637 + Kanga11a DNA Tc2 483 665 -305 4 644 2864 176 26 17 chr5 7859027 7859558 -144677701 + RLTR20B3 LTR ERVK 24 559 -18 4 644 531 45 0 0 chr5 7860150 7860216 -144677043 + (TAGA)n Simple_repeat Simple_repeat 2 67 0 4 644 213 258 20 101 chr5 7861101 7861200 -144676059 - MIRb SINE MIR -84 184 94 4 644 24 0 0 0 chr5 7861400 7861424 -144675835 + AT_rich Low_complexity Low_complexity 1 24 0 4 644 1652 21 0 5 chr5 7862053 7862245 -144675014 - B2_Mm1t SINE B2 -1 192 2 4 644 248 386 94 28 chr5 7862701 7863061 -144674198 + L4 LINE RTE 1466 1849 -180 4 645 7467 55 2 5 chr5 7864507 7865632 -144671627 - L1Md_F2 LINE L1 -12 6570 5449 4 645 667 266 77 34 chr5 7866824 7867058 -144670201 - MER21B LTR ERV1 -54 809 566 4 645 1353 188 202 0 chr5 7868438 7868730 -144668529 - Lx9 LINE L1 -637 7007 6657 4 645 2071 214 25 2 chr5 7868740 7869185 -144668074 + Lx9 LINE L1 7011 7465 -179 4 645 183 80 0 0 chr5 7869192 7869217 -144668042 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 4 645 316 160 131 9 chr5 7869217 7869324 -144667935 + Lx9 LINE L1 7518 7637 -7 4 645 305 357 76 91 chr5 7869948 7870343 -144666916 + MLT1I LTR MaLR 3 391 -20 4 645 25 75 0 0 chr5 7870694 7870747 -144666512 + AT_rich Low_complexity Low_complexity 1 53 0 4 645 1511 227 110 0 chr5 7871040 7871414 -144665845 - MTD LTR MaLR -4 415 1 4 645 1021 281 8 36 chr5 7871470 7871717 -144665542 + B4 SINE B4 3 242 -50 4 645 2714 36 0 0 chr5 7871828 7872159 -144665100 + MERVL-int LTR ERVL 4420 4750 -735 4 645 206 397 8 8 chr5 7872187 7872304 -144664955 - L2a LINE L2 0 3426 3310 4 645 27 0 0 0 chr5 7872800 7872827 -144664432 + AT_rich Low_complexity Low_complexity 1 27 0 4 645 242 226 113 0 chr5 7873502 7873564 -144663695 + RLTR28 LTR ERVL 1 69 -412 4 645 1342 172 34 11 chr5 7873556 7873821 -144663438 + RLTR28 LTR ERVL 254 524 0 4 645 426 85 0 0 chr5 7873867 7873926 -144663333 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 4 645 615 370 71 41 chr5 7873946 7874338 -144662921 + MT2A LTR ERVL 13 416 -117 4 645 356 321 17 35 chr5 7874483 7874599 -144662660 + MLT2B2 LTR ERVL 1 114 -401 4 645 306 0 0 0 chr5 7874607 7874641 -144662618 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 645 306 202 10 128 chr5 7874656 7874693 -144662566 + MLT2B2 LTR ERVL 75 102 -454 4 645 441 352 6 24 chr5 7874693 7874859 -144662400 - RSINE1 SINE B4 0 165 3 4 645 306 202 10 128 chr5 7874859 7874923 -144662336 + MLT2B2 LTR ERVL 103 164 -392 4 645 4492 91 3 2 chr5 7875129 7875764 -144661495 - L1_Mus3 LINE L1 -20 6618 5983 4 645 243 0 0 0 chr5 7875990 7876017 -144661242 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 4 645 396 292 102 0 chr5 7876051 7876188 -144661071 + B3A SINE B2 38 188 -10 4 645 3656 107 0 15 chr5 7877043 7877574 -144659685 - Lx LINE L1 -6 6648 6126 4 645 26 0 0 0 chr5 7879421 7879447 -144657812 + AT_rich Low_complexity Low_complexity 1 26 0 4 645 3280 181 56 110 chr5 7880490 7881469 -144655790 + Lx LINE L1 401 1117 -5517 4 645 1052 115 0 7 chr5 7881469 7881618 -144655641 + B1_Mus1 SINE Alu 1 148 0 4 645 22956 157 15 19 chr5 7881618 7887270 -144649989 + Lx LINE L1 1118 6654 0 4 645 207 69 0 0 chr5 7888715 7888744 -144648515 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 645 227 234 0 13 chr5 7888740 7888818 -144648441 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 4 645 454 271 49 0 chr5 7889369 7889491 -144647768 + RSINE1 SINE B4 3 130 -35 4 645 618 43 32 0 chr5 7889502 7889596 -144647663 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 4 645 399 295 149 14 chr5 7891495 7891636 -144645623 + RSINE1 SINE B4 3 162 -3 4 645 468 0 0 0 chr5 7892630 7892682 -144644577 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 645 435 19 0 0 chr5 7892682 7892733 -144644526 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 645 187 296 110 12 chr5 7893033 7893115 -144644144 - MIRm SINE MIR -172 104 15 4 645 41308 16 0 6 chr5 7893213 7899396 -144637863 - L1Md_A LINE L1 0 6582 440 4 645 441 0 0 0 chr5 7899580 7899629 -144637630 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 4 645 993 244 62 97 chr5 7900555 7900885 -144636374 + MTE2a LTR MaLR 1 313 -66 4 645 1008 53 0 0 chr5 7900885 7901016 -144636243 + (TC)n Simple_repeat Simple_repeat 2 132 0 4 645 300 27 0 0 chr5 7901016 7901052 -144636207 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 645 993 244 62 97 chr5 7901052 7901110 -144636149 + MTE2a LTR MaLR 314 375 -4 4 645 222 37 0 0 chr5 7901120 7901147 -144636112 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 4 645 1511 276 127 66 chr5 7901219 7901613 -144635646 - Lx8 LINE L1 -5 7468 7047 4 645 2649 80 9 0 chr5 7901613 7901937 -144635322 + ORR1A2 LTR MaLR 1 327 0 4 645 1511 276 127 66 chr5 7901937 7902272 -144634987 - Lx8 LINE L1 -427 7046 6694 4 645 6996 58 14 8 chr5 7902300 7902615 -144634644 - L1_Mus2 LINE L1 0 6566 6246 4 645 4578 21 0 0 chr5 7902615 7903097 -144634162 + LTRIS_Mm LTR ERV1 1 482 0 4 645 6996 58 14 8 chr5 7903097 7903665 -144633594 - L1_Mus2 LINE L1 -321 6245 5678 4 645 1014 302 119 34 chr5 7903665 7904135 -144633124 - Lx8 LINE L1 -768 6705 6196 4 645 1748 216 272 27 chr5 7904136 7904191 -144633068 + L1_Rod LINE L1 2274 2324 -3523 4 645 4442 87 35 0 chr5 7904191 7904755 -144632504 + MT2B2 LTR ERVL 1 584 0 4 645 1748 216 272 27 chr5 7904755 7905478 -144631781 + L1_Rod LINE L1 2325 3225 -2622 4 645 666 0 0 0 chr5 7905478 7905552 -144631707 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 645 1748 216 272 27 chr5 7905552 7905684 -144631575 + L1_Rod LINE L1 3226 3408 -2439 4 645 315 0 0 0 chr5 7905694 7905729 -144631530 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 645 1226 119 16 16 chr5 7906253 7906440 -144630819 + B2_Mm2 SINE B2 2 188 -7 4 645 504 284 34 34 chr5 7906706 7906881 -144630378 - MIR3 SINE MIR -14 194 20 4 645 303 273 25 91 chr5 7907142 7907263 -144629996 + BC1_Mm scRNA scRNA 1 113 -39 4 645 231 200 55 0 chr5 7907264 7907319 -144629940 + GA-rich Low_complexity Low_complexity 4 61 0 4 645 2799 212 82 2 chr5 7907849 7908468 -144628791 - RMER1A Other Other 0 1342 368 4 645 315 0 0 0 chr5 7908523 7908558 -144628701 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 645 273 287 87 19 chr5 7909741 7909844 -144627415 - PB1D10 SINE Alu -2 115 6 4 645 3896 96 101 0 chr5 7909882 7910447 -144626812 + Lx3C LINE L1 6147 6768 -208 4 645 335 198 0 140 chr5 7910444 7910544 -144626715 + Lx3C LINE L1 6878 6963 -13 4 645 215 31 31 0 chr5 7910544 7910576 -144626683 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 4 645 398 295 55 91 chr5 7910621 7910841 -144626418 + MER20 DNA MER1_type 5 216 -3 4 645 180 0 0 0 chr5 7911502 7911522 -144625737 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 4 645 3512 281 86 9 chr5 7912671 7912682 -144624577 - Lx8 LINE L1 -130 7343 7333 4 645 450 0 0 0 chr5 7912682 7912732 -144624527 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 645 3512 281 86 9 chr5 7912732 7913794 -144623465 - Lx8 LINE L1 -141 7332 6189 4 645 1842 208 26 213 chr5 7913966 7914599 -144622660 + RMER19B LTR ERVK 308 806 -96 4 645 2057 168 16 0 chr5 7914599 7914921 -144622338 - ORR1A2 LTR MaLR 0 327 1 4 645 1842 208 26 213 chr5 7914921 7915019 -144622240 + RMER19B LTR ERVK 807 902 0 4 645 1609 266 44 49 chr5 7915068 7915698 -144621561 - Lx8 LINE L1 -1690 5954 5298 4 645 4343 32 4 6 chr5 7915706 7916201 -144621058 - L1Md_F2 LINE L1 0 6582 6089 4 645 4005 45 2 0 chr5 7916201 7916780 -144620479 + L1Md_F2 LINE L1 5485 6064 -520 4 645 359 274 128 69 chr5 7916785 7916932 -144620327 - Lx8 LINE L1 -590 5290 5132 4 645 1283 111 16 16 chr5 7916932 7917124 -144620135 - B2_Mm1t SINE B2 0 193 2 4 645 359 294 104 72 chr5 7917124 7917277 -144619982 - Lx8 LINE L1 -981 5162 5014 4 645 189 288 93 27 chr5 7917684 7917759 -144619500 - MIRc SINE MIR -124 144 65 4 645 282 360 50 0 chr5 7917837 7917937 -144619322 + LTR16A LTR ERVL 281 385 -66 4 645 30 0 0 0 chr5 7918704 7918734 -144618525 + AT_rich Low_complexity Low_complexity 1 30 0 4 645 324 333 33 5 chr5 7919054 7919238 -144618021 - Lx9 LINE L1 -9 7635 7447 4 645 249 325 191 25 chr5 7919301 7919736 -144617523 + L2a LINE L2 2915 3421 -5 4 645 285 98 0 0 chr5 7920296 7920337 -144616922 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 645 617 25 13 0 chr5 7920344 7920423 -144616836 + (GA)n Simple_repeat Simple_repeat 2 81 0 4 645 624 38 0 0 chr5 7920981 7921060 -144616199 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 4 645 491 297 52 15 chr5 7921179 7921449 -144615810 + L1ME4a LINE L1 5592 5871 -253 4 645 21 0 0 0 chr5 7921493 7921514 -144615745 + AT_rich Low_complexity Low_complexity 1 21 0 4 645 287 298 124 0 chr5 7922823 7922944 -144614315 - LTR16C LTR ERVL -21 468 333 4 645 895 189 0 12 chr5 7923182 7923353 -144613906 - URR1A DNA MER1_type 0 226 58 4 645 280 295 104 94 chr5 7923363 7923565 -144613694 - MLT1H2 LTR MaLR -267 222 19 4 645 201 289 0 0 chr5 7924321 7924373 -144612886 + CT-rich Low_complexity Low_complexity 3 54 0 4 645 232 341 94 8 chr5 7924773 7924900 -144612359 + MIR SINE MIR 17 154 -108 4 645 210 37 0 0 chr5 7925249 7925276 -144611983 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 645 841 250 20 20 chr5 7926157 7926353 -144610906 + B3 SINE B2 16 211 -5 4 645 9524 145 52 26 chr5 7927519 7929582 -144607677 + Lx3C LINE L1 4145 6250 -726 4 645 278 339 122 16 chr5 7930074 7930263 -144606996 - MIR SINE MIR 0 262 54 4 645 252 0 0 0 chr5 7930267 7930295 -144606964 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 645 21 0 0 0 chr5 7931786 7931807 -144605452 + AT_rich Low_complexity Low_complexity 1 21 0 4 645 200 170 19 0 chr5 7931954 7932007 -144605252 + T-rich Low_complexity Low_complexity 3 56 0 4 645 2589 185 120 35 chr5 7932155 7932721 -144604538 - RLTR18 LTR ERVK -2 614 1 4 645 495 0 0 0 chr5 7932863 7932918 -144604341 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 645 327 104 0 0 chr5 7933262 7933310 -144603949 + (CAA)n Simple_repeat Simple_repeat 1 48 0 5 645 252 276 202 8 chr5 7933930 7934054 -144603205 - Charlie4a DNA MER1_type -16 492 345 5 645 419 300 49 21 chr5 7934059 7934202 -144603057 + B1F2 SINE Alu 1 147 -2 5 645 2736 136 33 29 chr5 7934202 7934687 -144602572 + RLTR28 LTR ERVL 37 523 -1 5 645 549 55 0 0 chr5 7934714 7934787 -144602472 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 645 313 274 147 26 chr5 7935813 7935929 -144601330 + B1F SINE Alu 19 148 -1 5 645 479 308 73 82 chr5 7935983 7936312 -144600947 - MLT1C LTR MaLR -97 370 45 5 645 284 50 0 0 chr5 7937050 7937090 -144600169 - L1_Mm LINE L1 -389 5494 5455 5 645 1148 96 51 0 chr5 7937088 7937265 -144599994 + L1Md_F2 LINE L1 6365 6550 -32 5 645 4028 128 10 88 chr5 7937265 7938035 -144599224 + L1Md_F LINE L1 184 895 -5624 5 645 3224 11 49 0 chr5 7938035 7938385 -144598874 - IAPLTR1_Mm LTR ERVK 0 367 1 5 645 54627 31 12 7 chr5 7938395 7944884 -144592375 - IAPEz-int LTR ERVK -10 6471 8 5 645 3224 11 49 0 chr5 7944884 7945234 -144592025 - IAPLTR1_Mm LTR ERVK 0 367 1 5 645 34260 65 1 1 chr5 7945234 7949851 -144587408 + L1Md_F2 LINE L1 875 5589 -297 5 645 8514 55 0 0 chr5 7949851 7950917 -144586342 + L1Md_F2 LINE L1 5590 6585 0 5 645 385 288 38 9 chr5 7951651 7951756 -144585503 + PB1D10 SINE Alu 2 109 -8 5 645 266 333 30 0 chr5 7951771 7951837 -144585422 + ID4 SINE ID 8 75 -8 5 645 230 324 39 39 chr5 7951837 7951848 -144585411 + ID SINE ID 8 84 -140 5 645 324 182 0 0 chr5 7953110 7953165 -144584094 - MIR SINE MIR -10 252 198 5 645 352 77 77 0 chr5 7953179 7953283 -144583976 + (TA)n Simple_repeat Simple_repeat 1 112 0 5 645 225 0 0 0 chr5 7953493 7953518 -144583741 + (GA)n Simple_repeat Simple_repeat 2 26 0 5 645 687 280 54 129 chr5 7953574 7953651 -144583608 - B4A SINE B4 -18 274 219 5 645 1010 194 134 5 chr5 7953651 7953838 -144583421 - B3 SINE B2 -4 212 2 5 645 687 280 54 129 chr5 7953838 7954055 -144583204 - B4A SINE B4 -74 218 2 5 645 516 343 74 56 chr5 7954081 7954365 -144582894 - B4 SINE B4 -2 290 2 5 645 26 30 0 0 chr5 7954551 7954584 -144582675 + AT_rich Low_complexity Low_complexity 1 33 0 5 645 611 309 62 16 chr5 7956084 7956278 -144580981 + B3 SINE B2 1 203 -13 5 645 22 0 0 0 chr5 7956672 7956694 -144580565 + AT_rich Low_complexity Low_complexity 1 22 0 5 645 212 255 0 0 chr5 7956939 7956986 -144580273 + CT-rich Low_complexity Low_complexity 2 48 0 5 645 270 0 0 0 chr5 7957878 7957908 -144579351 + (TTG)n Simple_repeat Simple_repeat 2 31 0 5 645 482 248 0 19 chr5 7957908 7958011 -144579248 - PB1D10 SINE Alu -9 108 8 5 645 623 325 138 28 chr5 7958127 7958519 -144578740 - RMER5 LTR ERV1 0 534 100 5 645 717 244 42 65 chr5 7962225 7962440 -144574819 + B4A SINE B4 2 211 -81 5 645 301 239 0 29 chr5 7962600 7962669 -144574590 + B4A SINE B4 218 284 -8 5 645 537 279 7 52 chr5 7963724 7963860 -144573399 + B3A SINE B2 2 131 -67 5 645 354 45 0 0 chr5 7963865 7963909 -144573350 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 645 292 283 112 9 chr5 7964272 7964379 -144572880 + L2b LINE L2 3241 3358 -17 5 645 186 43 0 0 chr5 7964730 7964753 -144572506 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 645 307 233 103 11 chr5 7965378 7965465 -144571794 - MER63B DNA AcHobo -28 408 314 5 645 356 294 73 0 chr5 7966790 7966899 -144570360 + B1F1 SINE Alu 13 129 -20 5 645 458 237 211 15 chr5 7967071 7967120 -144570139 + ID SINE ID 7 81 -143 5 645 251 274 60 94 chr5 7967120 7967237 -144570022 + PB1D10 SINE Alu 4 116 -1 5 645 367 226 92 42 chr5 7967636 7967756 -144569503 - MER53 DNA hAT -66 127 2 5 645 369 86 0 0 chr5 7969413 7969471 -144567788 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 645 581 286 164 53 chr5 7969488 7969732 -144567527 - B4 SINE B4 -10 282 12 5 645 22 70 0 0 chr5 7969813 7969856 -144567403 + AT_rich Low_complexity Low_complexity 1 43 0 5 645 228 239 127 9 chr5 7969868 7969978 -144567281 + L1MD2 LINE L1 4617 4739 -1407 5 645 234 191 0 0 chr5 7969998 7970045 -144567214 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 645 882 266 126 25 chr5 7970048 7970526 -144566733 + L1MD2 LINE L1 4746 5271 -875 5 645 21 36 0 0 chr5 7970532 7970560 -144566699 + AT_rich Low_complexity Low_complexity 1 28 0 5 645 470 305 38 0 chr5 7970568 7970699 -144566560 + B1F SINE Alu 1 136 -13 5 645 203 238 0 56 chr5 7970718 7970825 -144566434 + GA-rich Low_complexity Low_complexity 1 101 0 5 645 834 270 106 116 chr5 7970825 7971577 -144565682 + L1MD2 LINE L1 5317 6076 -166 5 645 203 176 106 0 chr5 7971692 7971777 -144565482 + (ATGTG)n Simple_repeat Simple_repeat 4 97 0 5 645 414 349 56 45 chr5 7972381 7972648 -144564611 - LTR16E2 LTR ERVL -38 530 261 5 645 23 0 0 0 chr5 7973187 7973210 -144564049 + AT_rich Low_complexity Low_complexity 1 23 0 5 645 870 274 92 16 chr5 7973532 7973781 -144563478 + B4 SINE B4 2 269 -23 5 645 261 0 0 0 chr5 7973781 7973810 -144563449 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 645 310 203 14 0 chr5 7973810 7973879 -144563380 - BGLII_B LTR ERVK -2 439 370 5 645 880 197 0 14 chr5 7974211 7974350 -144562909 + B1_Mur4 SINE Alu 5 141 -9 5 645 267 322 59 29 chr5 7977138 7977240 -144560019 - B1F SINE Alu 0 117 5 5 645 22 0 0 0 chr5 7977250 7977272 -144559987 + AT_rich Low_complexity Low_complexity 1 22 0 5 645 459 0 0 0 chr5 7977965 7978016 -144559243 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 645 475 256 67 30 chr5 7979085 7979250 -144558009 + MER5A DNA MER1_type 1 171 -18 5 645 290 297 13 39 chr5 7981075 7981152 -144556107 - ID4 SINE ID -6 77 3 5 645 292 243 14 54 chr5 7982988 7983062 -144554197 + ID_B1 SINE B4 86 156 -68 5 645 215 309 50 69 chr5 7983062 7983089 -144554170 + PB1D9 SINE Alu 5 103 -17 5 645 621 0 0 0 chr5 7983350 7983419 -144553840 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 645 2899 22 9 27 chr5 7983565 7983898 -144553361 + IAPLTR2b LTR ERVK 1 327 0 5 645 2284 160 8 14 chr5 7985189 7985557 -144551702 - ORR1B2 LTR MaLR 0 367 2 5 645 368 249 90 58 chr5 7985561 7985601 -144551658 - B2_Mm2 SINE B2 -1 194 1 5 645 611 272 27 7 chr5 7985601 7985749 -144551510 - RSINE1 SINE B4 -13 152 2 5 645 429 276 9 0 chr5 7986978 7987094 -144550165 - Lx6 LINE L1 -494 6966 6850 5 645 21 36 0 0 chr5 7987116 7987144 -144550115 + AT_rich Low_complexity Low_complexity 1 28 0 5 645 268 154 0 0 chr5 7987161 7987200 -144550059 + Lx6 LINE L1 6301 6339 -1121 5 645 219 36 0 0 chr5 7987920 7987948 -144549311 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 645 520 335 120 19 chr5 7988433 7988758 -144548501 + LTR16B1 LTR ERVL 13 370 -110 5 645 1649 216 18 30 chr5 7988893 7989231 -144548028 + ORR1C1 LTR MaLR 6 339 -39 5 645 250 67 22 22 chr5 7990651 7990697 -144546562 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 5 645 195 100 0 0 chr5 7991667 7991697 -144545562 + (T)n Simple_repeat Simple_repeat 1 30 0 5 645 8038 115 7 35 chr5 7991701 7991860 -144545399 - Lx3B LINE L1 -3 6970 6816 5 645 2698 168 24 79 chr5 7991860 7991956 -144545303 + RLTR31_Mm LTR ERVK 1 95 -466 5 645 540 0 0 0 chr5 7991956 7992016 -144545243 + (GA)n Simple_repeat Simple_repeat 2 61 0 5 645 2698 168 24 79 chr5 7992016 7992513 -144544746 + RLTR31_Mm LTR ERVK 96 561 0 5 645 8038 115 7 35 chr5 7992513 7993569 -144543690 - Lx3B LINE L1 -158 6815 5790 5 645 266 336 65 14 chr5 7993579 7993718 -144543541 + L1M7 LINE L1 1485 1630 -4588 5 645 370 66 0 47 chr5 7994211 7994275 -144542984 + (TTTTTG)n Simple_repeat Simple_repeat 4 64 0 5 645 373 136 0 0 chr5 7994279 7994338 -144542921 - B1_Mur3 SINE Alu -5 144 86 5 645 298 291 155 26 chr5 7995082 7995276 -144541983 - L1M2 LINE L1 -1435 4708 4490 5 80 670 152 17 11 chr5 7995277 7995456 -144541803 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 646 537 191 29 6 chr5 7995473 7995824 -144541435 + (TG)n Simple_repeat Simple_repeat 1 359 0 5 646 268 191 14 29 chr5 7995838 7995908 -144541351 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 646 712 250 151 16 chr5 7995908 7996213 -144541046 - L1M2 LINE L1 -1649 4494 4149 5 646 245 191 48 144 chr5 7996215 7996319 -144540940 - RSINE1 SINE B4 -28 137 44 5 646 15209 134 35 16 chr5 7996956 7999560 -144537699 + Lx4B LINE L1 3289 5951 -1107 5 646 348 83 0 0 chr5 7999562 7999610 -144537649 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 5 646 290 188 0 0 chr5 7999610 7999658 -144537601 + Lx4B LINE L1 5950 5997 -1053 5 646 189 0 0 0 chr5 7999681 7999702 -144537557 + (T)n Simple_repeat Simple_repeat 1 21 0 5 646 1786 166 3 3 chr5 7999703 8000000 -144537259 + Lx4B LINE L1 6289 6585 -465 5 646 1801 225 82 16 chr5 8000000 8000429 -144536830 + Lx5 LINE L1 6586 7042 -8 1 646 214 255 0 21 chr5 8000440 8000488 -144536771 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 646 445 281 91 48 chr5 8000775 8001088 -144536171 - RLTR16 LTR ERVK -296 396 24 3 646 475 326 21 0 chr5 8001391 8001535 -144535724 + RSINE1 SINE B4 19 165 0 4 646 2177 172 8 75 chr5 8001539 8002009 -144535250 + BGLII_B LTR ERVK 3 441 0 5 646 405 0 0 0 chr5 8002120 8002165 -144535094 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 646 360 0 0 0 chr5 8002165 8002204 -144535055 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 7 646 412 261 45 23 chr5 8002324 8002457 -144534802 - B1F SINE Alu -8 141 6 8 646 250 216 48 154 chr5 8002365 8002469 -144534790 - 4.5SRNA scRNA scRNA -1 93 1 9 646 378 0 0 0 chr5 8002725 8002767 -144534492 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 1 646 255 185 0 0 chr5 8002767 8002821 -144534438 - RMER10A LTR ERVL -68 374 321 1 646 450 0 0 0 chr5 8003185 8003235 -144534024 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 646 1773 140 70 18 chr5 8003589 8003931 -144533328 - ORR1B1 LTR MaLR 0 394 35 1 646 1331 182 24 77 chr5 8003925 8004377 -144532882 - RMER17C LTR ERVK -519 439 16 1 646 322 94 0 0 chr5 8004381 8004434 -144532825 - ORR1B1 LTR MaLR -341 53 1 1 646 1401 189 21 10 chr5 8004434 8004722 -144532537 - ORR1B1-int LTR MaLR 0 1509 1219 1 646 327 242 0 0 chr5 8004759 8004825 -144532434 + RMER6B LTR ERVK 69 134 -327 1 646 501 102 235 0 chr5 8004825 8004923 -144532336 + RMER6B LTR ERVK 67 187 -274 1 646 1301 213 76 69 chr5 8004965 8005384 -144531875 - RMER20A LTR ERVK -85 431 10 1 646 513 325 119 44 chr5 8005400 8006042 -144531217 - MERVK26-int LTR ERVK -7 6912 6223 1 646 454 226 212 113 chr5 8006415 8006750 -144530509 + RLTR9A LTR ERVK 1 368 0 1 646 1645 171 113 18 chr5 8006962 8007343 -144529916 - RLTR31_Mur LTR ERVK -25 528 112 1 646 1649 42 0 0 chr5 8007637 8007828 -144529431 - B2_Mm1t SINE B2 -1 192 2 2 646 373 300 48 87 chr5 8007987 8008217 -144529042 - MERVK26-int LTR ERVK -6411 508 288 2 646 5576 120 59 8 chr5 8008259 8009237 -144528022 + RLTR21 LTR ERVK 109 1136 -436 2 646 378 0 0 0 chr5 8009284 8009326 -144527933 + (TATG)n Simple_repeat Simple_repeat 3 44 0 2 646 436 144 17 126 chr5 8009356 8009475 -144527784 + RLTR21 LTR ERVK 1082 1187 -385 2 646 1165 184 132 0 chr5 8009464 8009752 -144527507 + RLTR25A LTR ERVK 778 1103 0 2 646 2447 194 172 72 chr5 8009752 8010302 -144526957 - ORR1B1-int LTR MaLR -252 1711 1073 2 646 4577 148 130 64 chr5 8010302 8011261 -144525998 - RLTR13D2 LTR ERVK 0 1023 1 2 646 2447 194 172 72 chr5 8011261 8011651 -144525608 - ORR1B1-int LTR MaLR -891 1072 677 2 646 831 209 0 248 chr5 8011463 8011806 -144525453 - MT2B LTR ERVL -343 258 1 2 646 250 75 25 0 chr5 8011807 8011847 -144525412 - MERVL_2A-int LTR ERVL -2 5759 5719 2 646 2179 183 93 116 chr5 8011847 8012502 -144524757 - ORR1B1-int LTR MaLR -1323 640 1 2 646 426 125 0 0 chr5 8012502 8012574 -144524685 - ORR1B1 LTR MaLR 0 367 296 2 646 378 96 41 0 chr5 8012701 8012774 -144524485 + (GGA)n Simple_repeat Simple_repeat 3 78 0 2 646 1401 178 45 17 chr5 8012776 8013068 -144524191 - ORR1B1 LTR MaLR -73 321 22 2 646 816 283 97 41 chr5 8013079 8013399 -144523860 + MER21B LTR ERV1 451 788 -75 3 646 297 241 0 0 chr5 8014641 8014699 -144522560 + B1F1 SINE Alu 4 61 -88 3 646 827 261 19 28 chr5 8014740 8014953 -144522306 + B3 SINE B2 1 211 -5 3 646 189 0 0 0 chr5 8015082 8015103 -144522156 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 646 342 309 10 0 chr5 8015115 8015212 -144522047 - B1F2 SINE Alu -51 98 1 3 646 787 222 0 0 chr5 8015566 8015710 -144521549 - B1F SINE Alu -5 144 1 3 646 195 246 154 0 chr5 8015710 8015775 -144521484 + MIRb SINE MIR 121 195 -73 3 646 22 35 0 0 chr5 8016164 8016193 -144521066 + AT_rich Low_complexity Low_complexity 1 29 0 3 646 1054 189 41 36 chr5 8016215 8016435 -144520824 + RMER1B Other Other 43 263 -803 3 646 1785 172 175 118 chr5 8016437 8016868 -144520391 + RMER20B LTR ERVK 1 458 -169 3 646 870 38 0 0 chr5 8016868 8016974 -144520285 + (TC)n Simple_repeat Simple_repeat 1 106 0 4 646 216 0 0 0 chr5 8016974 8016997 -144520262 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 646 306 0 0 0 chr5 8016997 8017030 -144520229 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 646 1785 172 175 118 chr5 8017030 8017189 -144520070 + RMER20B LTR ERVK 459 625 -2 3 646 697 267 12 6 chr5 8017271 8017437 -144519822 + MERVK26-int LTR ERVK 64 230 -6689 4 646 2947 36 0 0 chr5 8017569 8017901 -144519358 + IAPEY3_LTR LTR ERVK 1 332 0 4 646 59088 60 15 7 chr5 8017901 8025520 -144511739 + IAPEY3-int LTR ERVK 1 7680 0 4 646 2838 45 3 0 chr5 8025520 8025851 -144511408 + IAPEY3_LTR LTR ERVK 1 332 0 4 646 3769 39 0 0 chr5 8026445 8026887 -144510372 + L1Md_F2 LINE L1 5145 5586 -297 4 646 8357 38 1 4 chr5 8026887 8027886 -144509373 + L1Md_F2 LINE L1 5587 6582 0 4 646 254 215 109 101 chr5 8027988 8028107 -144509152 + RLTR19-int LTR ERVK 3829 3948 -2189 4 646 9701 115 67 18 chr5 8028254 8028590 -144508669 + RLTR22_Mur LTR ERVK 1 359 -1489 4 646 5480 25 6 3 chr5 8028590 8029231 -144508028 - L1Md_F3 LINE L1 -17 6567 5925 4 646 9701 115 67 18 chr5 8029231 8030156 -144507103 + RLTR22_Mur LTR ERVK 360 1326 -522 4 646 606 14 0 0 chr5 8030156 8030227 -144507032 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 646 9701 115 67 18 chr5 8030227 8030722 -144506537 + RLTR22_Mur LTR ERVK 1327 1842 -6 4 646 2091 233 37 0 chr5 8030747 8031184 -144506075 + MERVK26-int LTR ERVK 5533 5985 -934 4 646 1009 224 62 45 chr5 8031201 8031491 -144505768 - MYSERV-int LTR ERVK -1790 4760 4466 5 646 477 58 0 0 chr5 8031521 8031590 -144505669 + BGLII_B LTR ERVK 1 69 -372 5 646 342 0 0 0 chr5 8031592 8031630 -144505629 + (ATG)n Simple_repeat Simple_repeat 3 40 0 5 646 1457 133 4 16 chr5 8031632 8031884 -144505375 + BGLII_B LTR ERVK 193 441 0 5 646 2461 221 99 29 chr5 8031888 8032578 -144504681 - MYSERV6-int LTR ERVK -131 5129 4392 5 646 867 149 0 7 chr5 8032584 8032726 -144504533 - MYSERV6-int LTR ERVK -5245 3714 3574 5 646 2178 98 3 0 chr5 8032727 8033045 -144504214 - ORR1A2 LTR MaLR -8 319 1 5 646 680 214 128 15 chr5 8033045 8033155 -144504104 - MYSERV6-int LTR ERVK -5378 3581 3452 5 646 612 0 0 0 chr5 8033155 8033223 -144504036 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 5 646 2936 206 218 23 chr5 8033223 8033535 -144503724 - MYSERV6-int LTR ERVK -5508 3451 3104 5 646 2128 125 43 11 chr5 8033535 8033883 -144503376 - RLTR15 LTR ERVK 0 359 1 5 646 2936 203 48 27 chr5 8033883 8034332 -144502927 - MYSERV6-int LTR ERVK -5856 3103 2628 5 646 463 299 48 48 chr5 8034334 8034608 -144502651 + RLTR15 LTR ERVK 3 279 -80 5 646 2453 120 51 23 chr5 8034608 8035000 -144502259 - RLTR9D LTR ERVK 0 403 1 5 646 463 299 48 48 chr5 8035000 8035017 -144502242 + RLTR15 LTR ERVK 280 294 -65 5 646 1076 209 16 16 chr5 8035081 8035334 -144501925 - MYSERV6-int LTR ERVK -6327 2632 2380 5 646 318 203 0 0 chr5 8035334 8035393 -144501866 + ORR1D1-int LTR MaLR 1050 1108 -262 5 646 245 325 23 97 chr5 8035407 8035717 -144501542 + RMER10A LTR ERVL 12 298 -144 6 646 343 273 36 78 chr5 8035715 8035882 -144501377 + RMER10A LTR ERVL 258 417 -25 6 646 1186 172 40 0 chr5 8035893 8036120 -144501139 + ORR1D1-int LTR MaLR 1104 1339 -31 5 646 1372 182 97 46 chr5 8036113 8036464 -144500795 + ORR1D1 LTR MaLR 6 374 0 5 646 1243 320 48 46 chr5 8036465 8036641 -144500618 + L1MA4A LINE L1 4972 5134 -746 6 646 1229 61 0 0 chr5 8036641 8036788 -144500471 + B1_Mus1 SINE Alu 1 147 -1 6 646 1319 307 67 22 chr5 8036788 8037509 -144499750 + L1MA4A LINE L1 5135 5918 -385 6 646 662 133 23 17 chr5 8038127 8038303 -144498956 + (TA)n Simple_repeat Simple_repeat 2 178 0 6 646 305 25 0 0 chr5 8038914 8038954 -144498305 - RLTR1C LTR ERV1 0 503 464 6 646 305 25 0 0 chr5 8038962 8039002 -144498257 - RLTR1C LTR ERV1 0 503 464 6 646 4114 50 16 6 chr5 8039010 8039508 -144497751 - RLTR1C LTR ERV1 0 503 1 6 646 332 336 0 26 chr5 8039750 8039863 -144497396 + MTEa LTR MaLR 194 303 -76 6 646 514 174 10 0 chr5 8040032 8040130 -144497129 - B3 SINE B2 -117 99 1 6 646 220 200 0 0 chr5 8040466 8040511 -144496748 + (CACCAT)n Simple_repeat Simple_repeat 5 49 0 6 646 279 133 0 0 chr5 8040549 8040594 -144496665 + (CAT)n Simple_repeat Simple_repeat 2 46 0 6 646 520 256 108 0 chr5 8040608 8040803 -144496456 - L1MB1 LINE L1 -105 6063 5848 7 646 428 200 31 10 chr5 8040806 8040902 -144496357 + URR1A DNA MER1_type 1 98 -128 7 646 300 186 0 0 chr5 8040904 8040963 -144496296 + (TA)n Simple_repeat Simple_repeat 1 59 0 7 646 265 266 165 0 chr5 8041461 8041540 -144495719 + PB1D10 SINE Alu 1 92 -25 7 646 267 236 16 6 chr5 8041865 8041959 -144495300 + MER57C2 LTR ERV1 145 250 -161 7 646 1042 201 134 32 chr5 8042575 8042852 -144494407 - MTD LTR MaLR -22 397 73 7 646 1690 114 75 23 chr5 8042852 8043158 -144494101 + RLTRETN_Mm LTR ERVK 1 322 0 7 646 1042 191 86 33 chr5 8043158 8043210 -144494049 - MTD LTR MaLR -347 72 5 7 646 397 323 64 50 chr5 8043267 8043469 -144493790 - MLT1A0 LTR MaLR -11 354 150 7 646 390 91 0 0 chr5 8043469 8043524 -144493735 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 646 1616 252 27 10 chr5 8043609 8044021 -144493238 - MTD LTR MaLR 0 419 1 7 646 819 242 5 5 chr5 8044024 8044215 -144493044 + L1_Mur3 LINE L1 4017 4207 -1673 8 646 730 180 503 0 chr5 8044217 8044398 -144492861 + ORR1D1 LTR MaLR 2 273 -111 8 646 424 213 11 0 chr5 8044447 8044541 -144492718 + ORR1D1 LTR MaLR 276 370 -14 8 646 543 230 128 85 chr5 8044608 8044889 -144492370 + L1_Mur3 LINE L1 4287 4579 -1301 8 646 293 259 70 26 chr5 8044896 8045011 -144492248 - MER63D DNA AcHobo -116 945 826 8 646 294 143 0 0 chr5 8045316 8045365 -144491894 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 8 646 1190 62 0 0 chr5 8045365 8045511 -144491748 - B1_Mus2 SINE Alu 0 147 2 8 646 1543 178 32 128 chr5 8047057 8047210 -144490049 - Lx9 LINE L1 -179 7465 7325 8 646 4695 67 6 19 chr5 8047210 8047835 -144489424 - L1Md_F2 LINE L1 0 6582 5966 8 646 1543 182 33 120 chr5 8047835 8048096 -144489163 - Lx9 LINE L1 -320 7324 6943 8 646 378 57 0 0 chr5 8048111 8048164 -144489095 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 8 646 337 191 76 34 chr5 8048164 8048283 -144488976 + Lx9 LINE L1 7517 7640 -4 8 646 1496 228 48 44 chr5 8048812 8049316 -144487943 + RLTR12B LTR ERVK 1 506 -22 8 646 1790 173 127 0 chr5 8049748 8050095 -144487164 - RMER1A Other Other -16 1014 624 9 646 699 159 136 15 chr5 8050287 8050485 -144486774 + RMER17B LTR ERVK 236 457 -501 9 646 23 33 0 0 chr5 8050525 8050555 -144486704 + AT_rich Low_complexity Low_complexity 1 30 0 9 646 329 109 18 0 chr5 8050574 8050629 -144486630 + (TATG)n Simple_repeat Simple_repeat 4 59 0 9 646 454 317 21 28 chr5 8050644 8050787 -144486472 - RSINE1 SINE B4 -19 146 5 9 646 212 250 0 0 chr5 8051493 8051549 -144485710 + T-rich Low_complexity Low_complexity 6 61 0 9 646 229 278 28 0 chr5 8051557 8051629 -144485630 - ID2 SINE ID -9 74 1 9 646 320 235 12 12 chr5 8051958 8052044 -144485215 - MTEb LTR MaLR -4 375 290 9 646 258 138 0 0 chr5 8052060 8052118 -144485141 + (T)n Simple_repeat Simple_repeat 1 58 0 9 646 1224 148 63 0 chr5 8052185 8052422 -144484837 - RLTR28 LTR ERVL 0 524 273 9 646 511 177 62 0 chr5 8052426 8052522 -144484737 - RLTR28 LTR ERVL -422 102 1 9 646 258 298 114 40 chr5 8052536 8052711 -144484548 - MTEb LTR MaLR -171 188 1 9 646 423 0 0 0 chr5 8052825 8052872 -144484387 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 646 210 71 0 0 chr5 8054328 8054356 -144482903 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 1 646 260 130 0 36 chr5 8055573 8055629 -144481630 + (TAA)n Simple_repeat Simple_repeat 1 54 0 1 646 24 32 0 0 chr5 8056483 8056514 -144480745 + GC_rich Low_complexity Low_complexity 1 31 0 1 646 276 30 0 0 chr5 8058468 8058501 -144478758 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 646 22 0 0 0 chr5 8058839 8058861 -144478398 + AT_rich Low_complexity Low_complexity 1 22 0 1 646 209 30 0 57 chr5 8060118 8060153 -144477106 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 1 646 1746 11 0 21 chr5 8060788 8060977 -144476282 - B2_Mm1a SINE B2 -8 185 1 1 646 578 318 88 40 chr5 8061520 8061917 -144475342 - RMER5 LTR ERV1 -7 527 112 1 646 207 0 0 0 chr5 8062471 8062494 -144474765 + (A)n Simple_repeat Simple_repeat 1 23 0 1 646 575 244 29 29 chr5 8062668 8062807 -144474452 + B1F SINE Alu 6 144 -5 1 646 235 231 19 0 chr5 8063475 8063527 -144473732 + CT-rich Low_complexity Low_complexity 4 56 0 1 646 261 139 0 0 chr5 8063529 8063572 -144473687 + (TTG)n Simple_repeat Simple_repeat 2 44 0 1 646 432 188 144 29 chr5 8064699 8064803 -144472456 + PB1D7 SINE Alu 5 120 0 1 646 902 269 63 37 chr5 8064988 8065258 -144472001 + B4 SINE B4 15 291 -1 1 646 365 259 59 0 chr5 8065265 8065435 -144471824 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 646 287 282 59 0 chr5 8065455 8065625 -144471634 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 646 361 256 60 0 chr5 8065728 8065896 -144471363 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 646 316 276 59 0 chr5 8065935 8066105 -144471154 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 646 1058 193 42 23 chr5 8066597 8066814 -144470445 + URR1A DNA MER1_type 5 225 -1 1 646 357 270 80 7 chr5 8068210 8068348 -144468911 + L1ME4a LINE L1 5969 6116 -8 1 646 217 337 88 22 chr5 8068353 8068444 -144468815 + B3 SINE B2 2 98 -118 1 646 686 109 9 0 chr5 8068740 8068850 -144468409 + (GA)n Simple_repeat Simple_repeat 2 112 0 1 646 219 161 35 18 chr5 8069191 8069248 -144468011 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 646 220 26 49 49 chr5 8069393 8069408 -144467851 + (TTTC)n Simple_repeat Simple_repeat 2 15 0 1 646 7485 98 7 40 chr5 8069408 8070507 -144466752 - Lx3B LINE L1 -3 6970 5908 1 646 220 26 49 49 chr5 8070507 8070532 -144466727 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 1 646 1632 137 23 18 chr5 8070535 8070835 -144466424 - Lx3_Mus LINE L1 -274 6023 5681 1 646 361 276 2 2 chr5 8071308 8071423 -144465836 - B1F SINE Alu -33 116 2 1 646 24 53 0 0 chr5 8078067 8078105 -144459154 + AT_rich Low_complexity Low_complexity 1 38 0 1 646 252 0 0 0 chr5 8078496 8078524 -144458735 + (A)n Simple_repeat Simple_repeat 1 28 0 1 646 478 348 138 15 chr5 8078879 8079139 -144458120 - B4 SINE B4 0 292 1 1 646 243 0 0 0 chr5 8079175 8079202 -144458057 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 1 646 27 73 0 0 chr5 8079262 8079317 -144457942 + AT_rich Low_complexity Low_complexity 1 55 0 1 646 411 21 0 0 chr5 8079397 8079445 -144457814 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 646 234 269 34 92 chr5 8079550 8079669 -144457590 - PB1D9 SINE Alu -7 113 2 1 646 688 258 25 0 chr5 8079669 8079753 -144457506 - B4A SINE B4 -203 89 2 1 646 422 261 6 17 chr5 8079969 8080148 -144457111 + C-rich Low_complexity Low_complexity 2 178 0 1 646 360 0 0 0 chr5 8080149 8080189 -144457070 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 646 657 186 118 77 chr5 8080649 8080818 -144456441 + B3A SINE B2 22 197 -1 1 646 835 129 42 28 chr5 8081617 8081760 -144455499 + B1_Mur3 SINE Alu 2 146 -3 1 646 360 262 89 45 chr5 8081895 8082007 -144455252 + PB1D10 SINE Alu 1 117 0 1 646 186 82 19 58 chr5 8082007 8082059 -144455200 + A-rich Low_complexity Low_complexity 1 50 0 1 646 1287 95 3 0 chr5 8083379 8083762 -144453497 + (TG)n Simple_repeat Simple_repeat 1 383 0 1 646 809 263 159 16 chr5 8083796 8084047 -144453212 - B4 SINE B4 -5 287 1 1 646 30 45 0 0 chr5 8084057 8084101 -144453158 + AT_rich Low_complexity Low_complexity 1 44 0 1 646 690 13 0 0 chr5 8087829 8087908 -144449351 + (GA)n Simple_repeat Simple_repeat 1 79 0 1 646 21 0 0 0 chr5 8089210 8089231 -144448028 + AT_rich Low_complexity Low_complexity 1 21 0 1 646 23 0 0 0 chr5 8089914 8089937 -144447322 + AT_rich Low_complexity Low_complexity 1 23 0 1 646 203 0 37 0 chr5 8092924 8092951 -144444308 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 646 22 0 0 0 chr5 8093311 8093333 -144443926 + AT_rich Low_complexity Low_complexity 1 22 0 1 646 22 0 0 0 chr5 8094868 8094890 -144442369 + AT_rich Low_complexity Low_complexity 1 22 0 1 646 509 71 0 0 chr5 8097668 8097738 -144439521 + L1_Mus1 LINE L1 6498 6567 0 1 646 23 0 0 0 chr5 8097885 8097908 -144439351 + AT_rich Low_complexity Low_complexity 1 23 0 1 646 237 180 0 0 chr5 8098539 8098589 -144438670 + A-rich Low_complexity Low_complexity 1 50 0 1 646 32378 78 2 14 chr5 8099349 8104582 -144432677 + L1Md_F LINE L1 415 5585 -298 1 646 8127 67 2 5 chr5 8104582 8105580 -144431679 + L1Md_F2 LINE L1 5587 6581 -1 1 646 27 0 0 0 chr5 8105611 8105638 -144431621 + AT_rich Low_complexity Low_complexity 1 27 0 1 646 620 242 196 6 chr5 8107273 8107452 -144429807 - B3 SINE B2 -1 215 3 1 646 634 253 235 0 chr5 8107588 8107758 -144429501 - B3 SINE B2 -2 214 5 1 646 705 191 137 0 chr5 8108721 8108852 -144428407 + B1_Mur1 SINE Alu 1 149 0 1 646 21 57 0 0 chr5 8108929 8108964 -144428295 + AT_rich Low_complexity Low_complexity 1 35 0 1 646 527 85 0 12 chr5 8109900 8109983 -144427276 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 646 716 298 47 6 chr5 8109986 8110155 -144427104 - B3A SINE B2 -22 176 1 1 646 306 0 0 0 chr5 8111305 8111339 -144425920 + (TTCCC)n Simple_repeat Simple_repeat 1 34 0 1 646 1148 32 25 0 chr5 8111339 8111495 -144425764 + (TTCC)n Simple_repeat Simple_repeat 2 162 0 1 646 660 130 0 0 chr5 8111496 8111634 -144425625 + (TC)n Simple_repeat Simple_repeat 1 138 0 1 646 421 331 16 88 chr5 8111643 8111835 -144425424 - B3A SINE B2 -16 182 5 1 646 562 222 159 32 chr5 8112559 8112810 -144424449 + Lx6 LINE L1 885 1167 -6561 1 646 807 144 13 111 chr5 8112843 8113069 -144424190 + Lx4B LINE L1 6853 7056 -2 1 646 3134 183 55 12 chr5 8113099 8113956 -144423303 + Lx6 LINE L1 1152 2049 -3828 1 646 411 56 0 0 chr5 8113960 8114014 -144423245 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 646 588 238 0 7 chr5 8114014 8114162 -144423097 + L1_Mur2 LINE L1 613 759 -5953 1 646 4651 212 55 15 chr5 8114167 8115791 -144421468 + Lx6 LINE L1 4913 6839 -621 1 646 598 308 17 17 chr5 8115914 8116086 -144421173 - B3 SINE B2 -44 172 1 1 646 404 341 14 35 chr5 8117934 8118077 -144419182 - ID_B1 SINE B4 -1 223 84 1 646 22 56 0 0 chr5 8118132 8118168 -144419091 + AT_rich Low_complexity Low_complexity 1 36 0 1 646 954 278 21 42 chr5 8118596 8118885 -144418374 - B4A SINE B4 -6 286 4 1 646 721 349 113 22 chr5 8118920 8119644 -144417615 - HAL1 LINE L1 -100 2407 1618 1 646 438 272 123 0 chr5 8119656 8119762 -144417497 - PB1D10 SINE Alu -7 120 5 1 646 314 366 92 62 chr5 8120304 8120758 -144416501 - HAL1 LINE L1 -2006 501 34 1 646 1159 62 0 0 chr5 8121690 8121835 -144415424 - B1_Mm SINE Alu -2 145 1 1 646 614 182 119 15 chr5 8121904 8122038 -144415221 + B1_Mus1 SINE Alu 1 148 0 1 646 3343 137 22 4 chr5 8122659 8123737 -144413522 - L1VL4 LINE L1 -2049 1566 443 1 646 3624 153 12 5 chr5 8123931 8124593 -144412666 + MusHAL1 LINE L1 952 1618 -1094 1 646 5576 82 29 10 chr5 8124593 8125386 -144411873 + RLTR13C2 LTR ERVK 1 808 0 1 646 449 92 12 50 chr5 8125386 8125466 -144411793 + MusHAL1 LINE L1 1613 1689 -1023 1 80 4867 128 58 12 chr5 8125444 8126483 -144410776 + Lx2B LINE L1 5244 6331 -669 1 647 3173 51 5 5 chr5 8126483 8126879 -144410380 + MTA_Mm LTR MaLR 1 396 0 1 647 4867 117 52 17 chr5 8126879 8127012 -144410247 + Lx2B LINE L1 6332 6457 -543 1 647 548 273 0 0 chr5 8128007 8128117 -144409142 + ID_B1 SINE B4 102 211 -13 1 647 243 0 0 0 chr5 8128119 8128146 -144409113 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 647 449 305 139 17 chr5 8128293 8128473 -144408786 + B4A SINE B4 5 206 -86 1 647 1217 48 0 0 chr5 8128677 8128823 -144408436 + B1_Mm SINE Alu 2 147 0 1 647 288 70 0 0 chr5 8128843 8128886 -144408373 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 647 27 0 0 0 chr5 8128901 8128928 -144408331 + AT_rich Low_complexity Low_complexity 1 27 0 1 647 342 0 0 0 chr5 8128936 8128974 -144408285 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 647 316 242 30 153 chr5 8129350 8129474 -144407785 + PB1D10 SINE Alu 9 120 0 1 647 26 50 0 0 chr5 8131063 8131103 -144406156 + AT_rich Low_complexity Low_complexity 1 40 0 1 647 494 314 113 28 chr5 8131864 8132155 -144405104 + Tigger6a DNA MER2_type 72 387 -696 1 647 240 280 12 118 chr5 8132163 8132248 -144405011 + ID4 SINE ID 2 77 -6 1 647 377 286 156 69 chr5 8133506 8133679 -144403580 + MER20 DNA MER1_type 10 197 -22 1 647 193 254 100 17 chr5 8133827 8133887 -144403372 - L2b LINE L2 0 3375 3311 1 647 209 342 53 0 chr5 8134257 8134333 -144402926 + MIRc SINE MIR 29 108 -160 1 647 731 260 36 0 chr5 8135479 8135671 -144401588 + B3 SINE B2 18 216 0 1 647 24 0 0 0 chr5 8135673 8135697 -144401562 + AT_rich Low_complexity Low_complexity 1 24 0 1 647 300 176 0 0 chr5 8135752 8135820 -144401439 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 647 420 240 173 49 chr5 8135820 8135982 -144401277 - B3A SINE B2 -15 183 2 2 647 212 128 51 0 chr5 8135988 8136027 -144401232 + T-rich Low_complexity Low_complexity 1 41 0 2 647 510 234 72 8 chr5 8136080 8136205 -144401054 - B1F SINE Alu -1 148 16 2 647 237 274 31 10 chr5 8137176 8137272 -144399987 + L1MC4 LINE L1 7534 7631 -411 2 647 2844 83 10 8 chr5 8137791 8138180 -144399079 + L1_Mus2 LINE L1 6177 6566 0 2 647 369 0 0 0 chr5 8138300 8138341 -144398918 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 647 29 0 0 0 chr5 8138533 8138562 -144398697 + AT_rich Low_complexity Low_complexity 1 29 0 2 647 22 88 0 0 chr5 8138736 8138793 -144398466 + AT_rich Low_complexity Low_complexity 1 57 0 2 647 236 242 83 10 chr5 8139119 8139215 -144398044 + PB1D10 SINE Alu 1 103 -14 2 647 740 235 0 0 chr5 8139798 8139930 -144397329 - B1_Mur1 SINE Alu -8 141 10 2 647 533 222 33 87 chr5 8140020 8140203 -144397056 + B4A SINE B4 116 288 -4 2 647 490 271 29 36 chr5 8140573 8140711 -144396548 - ID_B1 SINE B4 -3 221 85 2 647 302 326 85 34 chr5 8140773 8141008 -144396251 + L1ME3B LINE L1 5821 6067 -173 2 647 1259 36 42 0 chr5 8141926 8142091 -144395168 + L1Md_A LINE L1 6409 6580 -2 2 647 429 178 148 0 chr5 8143264 8143365 -144393894 - PB1 SINE Alu -7 120 5 2 647 278 314 36 20 chr5 8144532 8144727 -144392532 + L1MC4 LINE L1 7423 7620 -422 2 647 263 232 72 0 chr5 8146744 8146813 -144390446 + ID4_ SINE ID 1 74 -9 2 647 1104 116 0 0 chr5 8147245 8147575 -144389684 + (CA)n Simple_repeat Simple_repeat 1 330 0 2 647 762 139 0 0 chr5 8147756 8147921 -144389338 + (TC)n Simple_repeat Simple_repeat 2 166 0 2 647 3595 93 18 10 chr5 8147922 8148433 -144388826 - L1_Mus3 LINE L1 -15 6623 6109 2 647 579 258 0 0 chr5 8148842 8149110 -144388149 + (TG)n Simple_repeat Simple_repeat 1 268 0 2 647 21 0 0 0 chr5 8150402 8150423 -144386836 + AT_rich Low_complexity Low_complexity 1 21 0 2 647 2909 74 7 31 chr5 8150423 8150844 -144386415 - L1_Mus1 LINE L1 0 6567 6157 2 647 221 306 35 12 chr5 8151142 8151228 -144386031 + MIR SINE MIR 111 198 -64 2 647 359 259 53 18 chr5 8151354 8151468 -144385791 + PB1D7 SINE Alu 3 120 0 2 647 210 262 81 23 chr5 8151498 8151584 -144385675 + PB1D10 SINE Alu 5 95 -22 2 647 489 168 0 19 chr5 8153015 8153118 -144384141 + Lx6 LINE L1 5807 5907 -1553 2 647 3856 138 42 32 chr5 8153149 8153892 -144383367 + RMER17A LTR ERVK 1 750 -1 2 647 22 35 0 0 chr5 8153929 8153958 -144383301 + AT_rich Low_complexity Low_complexity 1 29 0 2 647 282 220 19 48 chr5 8153958 8154063 -144383196 + Lx8 LINE L1 7371 7472 -1 2 647 294 314 61 71 chr5 8154145 8154343 -144382916 + MLT1F2 LTR MaLR 397 592 -61 2 647 1348 219 8 2 chr5 8154719 8155146 -144382113 - Lx4B LINE L1 -129 6847 6155 2 647 330 305 60 24 chr5 8155276 8155537 -144381722 + L1ME2 LINE L1 4494 4761 -1382 2 647 201 159 0 0 chr5 8155554 8155598 -144381661 + (CAGA)n Simple_repeat Simple_repeat 3 46 0 2 647 348 329 132 0 chr5 8156022 8156189 -144381070 + MER5A DNA MER1_type 1 189 0 2 647 421 257 91 10 chr5 8156311 8156577 -144380682 + L1ME2 LINE L1 5680 5967 -212 2 647 311 319 0 8 chr5 8157114 8157234 -144380025 + PB1D7 SINE Alu 2 120 0 2 647 233 89 0 22 chr5 8157307 8157353 -144379906 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 2 647 21 0 0 0 chr5 8157406 8157427 -144379832 + AT_rich Low_complexity Low_complexity 1 21 0 2 647 623 245 35 7 chr5 8157662 8157806 -144379453 - RSINE1 SINE B4 -16 149 2 2 647 591 305 75 44 chr5 8159988 8160307 -144376952 + MLT1B LTR MaLR 36 364 -26 2 647 807 88 0 0 chr5 8160465 8160578 -144376681 + (TCTCCC)n Simple_repeat Simple_repeat 6 118 0 2 647 312 91 0 0 chr5 8160578 8160621 -144376638 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 647 527 85 12 0 chr5 8160941 8161023 -144376236 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 647 213 370 12 0 chr5 8161319 8161400 -144375859 + ID_B1 SINE B4 84 165 -59 2 647 212 375 107 0 chr5 8161400 8161430 -144375829 + PB1 SINE Alu 3 125 -2 2 647 198 310 109 38 chr5 8161898 8162109 -144375150 - L2a LINE L2 -62 3364 3139 2 647 207 0 0 0 chr5 8162158 8162181 -144375078 + (A)n Simple_repeat Simple_repeat 1 23 0 2 647 387 244 111 23 chr5 8162187 8162359 -144374900 - L2a LINE L2 -402 3017 2831 2 647 241 308 25 13 chr5 8162380 8162459 -144374800 - PB1D7 SINE Alu -1 119 40 2 647 223 294 0 0 chr5 8162475 8162526 -144374733 - B4A SINE B4 -156 136 86 2 647 254 367 113 7 chr5 8162532 8162683 -144374576 - L2a LINE L2 -607 2812 2646 2 647 632 181 6 0 chr5 8162697 8162868 -144374391 + (TG)n Simple_repeat Simple_repeat 1 172 0 2 647 376 258 71 16 chr5 8162948 8163074 -144374185 - L2a LINE L2 -772 2647 2515 2 647 342 0 0 0 chr5 8163074 8163112 -144374147 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 647 1788 176 32 32 chr5 8163238 8163609 -144373650 - ORR1D1 LTR MaLR -3 371 1 2 647 1369 275 73 8 chr5 8164294 8164679 -144372580 + MTD LTR MaLR 10 419 0 2 647 297 37 55 18 chr5 8166635 8166690 -144370569 + (CAAAAA)n Simple_repeat Simple_repeat 3 59 0 2 647 7092 51 5 0 chr5 8168091 8169175 -144368084 + L1Md_F2 LINE L1 4998 6085 -497 2 647 36085 60 17 6 chr5 8169172 8174491 -144362768 + L1Md_T LINE L1 206 5586 -297 2 647 8545 35 0 0 chr5 8174491 8175487 -144361772 + L1Md_T LINE L1 5587 6582 0 2 647 3937 68 6 21 chr5 8175489 8176015 -144361244 + L1Md_F2 LINE L1 6065 6582 0 2 647 240 245 39 96 chr5 8176018 8176122 -144361137 + MER5A1 DNA MER1_type 69 166 0 2 647 318 287 107 0 chr5 8176398 8176520 -144360739 + MIR SINE MIR 119 253 -9 2 647 2464 187 87 20 chr5 8176634 8176732 -144360527 - Lx9 LINE L1 -7 7637 7533 2 647 207 0 0 0 chr5 8176732 8176755 -144360504 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 647 2464 187 87 20 chr5 8176755 8177218 -144360041 - Lx9 LINE L1 -112 7532 7038 2 647 840 183 11 58 chr5 8177391 8177582 -144359677 + RLTR17 LTR ERVK 510 691 -1 2 647 326 289 15 69 chr5 8177677 8177807 -144359452 + ORR1E LTR MaLR 1 123 -236 2 647 280 244 105 0 chr5 8177894 8177980 -144359279 + ORR1E LTR MaLR 283 377 -2 2 647 523 289 132 26 chr5 8178548 8178775 -144358484 - Lx8 LINE L1 -220 7253 7003 2 647 324 310 64 66 chr5 8178794 8179050 -144358209 - L1_Rod LINE L1 -2425 3422 3176 2 647 1592 175 41 9 chr5 8179050 8179368 -144357891 + ORR1A4 LTR MaLR 2 329 0 2 647 324 310 64 66 chr5 8179368 8179564 -144357695 - L1_Rod LINE L1 -2672 3175 2971 2 647 297 0 0 0 chr5 8180615 8180648 -144356611 + (CAA)n Simple_repeat Simple_repeat 3 35 0 2 647 262 343 0 19 chr5 8181561 8181665 -144355594 - RSINE1 SINE B4 -47 118 17 2 647 192 40 0 0 chr5 8182776 8182801 -144354458 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 647 278 167 17 0 chr5 8182803 8182863 -144354396 + GA-rich Low_complexity Low_complexity 1 61 0 2 647 3730 96 6 0 chr5 8183626 8184125 -144353134 + L1_Mus2 LINE L1 6061 6562 -4 2 647 343 226 35 27 chr5 8184674 8184787 -144352472 - PB1D10 SINE Alu -1 116 11 2 647 3138 107 11 4 chr5 8185317 8185892 -144351367 - L1_Mus3 LINE L1 0 6638 6174 2 647 264 265 126 17 chr5 8185902 8186021 -144351238 - L1M3 LINE L1 -695 5596 5465 2 647 398 247 40 27 chr5 8186136 8186286 -144350973 - L1M3 LINE L1 -1087 5053 4902 2 647 5426 65 4 0 chr5 8186604 8187291 -144349968 + L1_Mus2 LINE L1 5877 6566 0 2 647 219 316 102 0 chr5 8187664 8187762 -144349497 - B3A SINE B2 -33 165 58 2 647 1006 155 36 10 chr5 8188552 8188748 -144348511 + RLTR41 LTR ERV1 246 446 0 2 647 186 43 0 0 chr5 8189156 8189179 -144348080 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 647 448 273 75 11 chr5 8189201 8189375 -144347884 + MER34A1 LTR ERV1 295 479 -108 2 647 567 43 0 0 chr5 8189379 8189449 -144347810 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 647 495 0 0 0 chr5 8189450 8189505 -144347754 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 2 647 392 67 17 0 chr5 8190101 8190161 -144347098 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 647 354 74 0 0 chr5 8190161 8190215 -144347044 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 647 1232 274 12 29 chr5 8190319 8190665 -144346594 - Lx6 LINE L1 -26 7434 7095 2 647 1493 189 49 0 chr5 8190711 8191077 -144346182 - L1_Mur2 LINE L1 -4236 1641 1258 2 647 453 81 0 0 chr5 8191334 8191396 -144345863 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 647 401 244 7 154 chr5 8191396 8191532 -144345727 - B1_Mur1 SINE Alu -33 116 1 2 647 333 274 45 7 chr5 8191532 8191686 -144345573 + L1M4 LINE L1 4890 5049 -1097 2 647 7744 68 3 3 chr5 8191777 8192820 -144344439 - L1Md_F2 LINE L1 -10 6572 5530 2 647 2180 106 237 26 chr5 8192928 8193384 -144343875 + RLTR6_Mm LTR ERV1 37 588 -66 2 647 17537 80 61 15 chr5 8193384 8193564 -144343695 - L1Md_F2 LINE L1 -353 5530 5356 2 647 4219 31 12 2 chr5 8193564 8194052 -144343207 - MT2_Mm LTR ERVL 0 493 1 2 647 17537 80 61 15 chr5 8194052 8196374 -144340885 - L1Md_F2 LINE L1 -528 5355 2912 2 647 31777 80 2 95 chr5 8196405 8203226 -144334033 - L1Md_F2 LINE L1 -1 6581 217 2 647 784 247 0 6 chr5 8204340 8204511 -144332748 + B3 SINE B2 3 172 -44 2 647 1505 158 55 92 chr5 8204511 8204642 -144332617 + MERVK26-int LTR ERVK 6633 6759 -160 2 647 2924 145 8 6 chr5 8204642 8205127 -144332132 - Lx2 LINE L1 -1 6996 6511 2 647 1505 158 55 92 chr5 8205127 8205287 -144331972 + MERVK26-int LTR ERVK 6760 6913 -6 2 647 1147 74 0 20 chr5 8205493 8205644 -144331615 + B1_Mus1 SINE Alu 1 148 0 2 647 264 304 55 24 chr5 8205644 8205798 -144331461 + L1M2 LINE L1 5486 5645 -655 2 647 6804 59 9 18 chr5 8205806 8206420 -144330839 + L1Md_F2 LINE L1 5693 6312 -270 2 647 2358 66 122 11 chr5 8206420 8206771 -144330488 - RLTR10 LTR ERVK 0 390 1 2 647 6804 59 9 18 chr5 8206771 8207042 -144330217 + L1Md_F2 LINE L1 6313 6570 -12 2 647 261 0 0 0 chr5 8208080 8208109 -144329150 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 647 202 217 29 0 chr5 8208157 8208226 -144329033 + GA-rich Low_complexity Low_complexity 2 72 0 3 647 311 271 0 12 chr5 8208346 8208432 -144328827 + PB1D10 SINE Alu 24 108 -9 3 647 725 121 0 8 chr5 8208433 8208558 -144328701 + (GA)n Simple_repeat Simple_repeat 1 124 0 3 647 22 0 0 0 chr5 8208587 8208609 -144328650 + AT_rich Low_complexity Low_complexity 1 22 0 3 647 5133 181 77 77 chr5 8208721 8210173 -144327086 + Lx7 LINE L1 5215 6750 -946 3 647 360 0 0 0 chr5 8210173 8210213 -144327046 + (CAAAA)n Simple_repeat Simple_repeat 4 43 0 3 647 914 84 7 7 chr5 8210221 8210364 -144326895 + L1_Mus4 LINE L1 6481 6623 -13 3 647 980 135 0 0 chr5 8210366 8210514 -144326745 + B1_Mus1 SINE Alu 1 148 0 3 647 5133 215 102 119 chr5 8210514 8211234 -144326025 + Lx7 LINE L1 6751 7363 -333 3 647 559 152 18 0 chr5 8211243 8211355 -144325904 + (TA)n Simple_repeat Simple_repeat 2 115 0 3 647 712 219 41 30 chr5 8211522 8211691 -144325568 + Lx6 LINE L1 7290 7460 0 3 647 6964 86 19 44 chr5 8211752 8212198 -144325061 - Lx3_Mus LINE L1 0 7009 6576 3 647 213 0 81 0 chr5 8212198 8212235 -144325024 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 647 6964 86 19 44 chr5 8212235 8212858 -144324401 - Lx3_Mus LINE L1 -434 6575 5967 3 647 10781 84 20 5 chr5 8212859 8214394 -144322865 + Lx3_Mus LINE L1 4393 5938 -1071 3 647 30 0 0 0 chr5 8214402 8214432 -144322827 + AT_rich Low_complexity Low_complexity 1 30 0 3 647 288 314 116 51 chr5 8215019 8215311 -144321948 - MLT1C LTR MaLR 0 467 157 3 647 255 171 0 0 chr5 8215561 8215602 -144321657 + B3A SINE B2 1 41 -157 3 647 285 29 0 0 chr5 8216828 8216862 -144320397 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 3 647 335 276 50 99 chr5 8217239 8217420 -144319839 + B3A SINE B2 27 198 0 3 647 296 238 50 0 chr5 8217459 8217539 -144319720 + B4A SINE B4 1 84 -208 3 647 675 215 0 0 chr5 8217662 8217839 -144319420 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 647 432 221 0 0 chr5 8217858 8217971 -144319288 + (CA)n Simple_repeat Simple_repeat 2 114 0 3 647 5662 116 82 12 chr5 8218665 8219593 -144317666 - L1Md_T LINE L1 -2 6580 5588 3 647 709 101 0 0 chr5 8219610 8219709 -144317550 + L1_Mus3 LINE L1 6362 6460 -178 3 647 587 317 0 0 chr5 8220544 8220689 -144316570 - B1F2 SINE Alu -1 148 4 3 647 269 211 55 39 chr5 8221001 8221129 -144316130 + (CA)n Simple_repeat Simple_repeat 2 131 0 3 647 375 178 14 0 chr5 8221132 8221205 -144316054 + HAL1-3A_ME LINE L1 1976 2049 -809 3 647 186 292 0 0 chr5 8222750 8222798 -144314461 + L2a LINE L2 3312 3359 -67 3 647 240 35 0 0 chr5 8223010 8223039 -144314220 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 647 22 0 0 0 chr5 8223136 8223158 -144314101 + AT_rich Low_complexity Low_complexity 1 22 0 3 647 450 36 0 0 chr5 8223226 8223282 -144313977 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 647 336 175 0 0 chr5 8223481 8223544 -144313715 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 3 647 492 18 0 0 chr5 8223546 8223603 -144313656 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 647 217 301 72 17 chr5 8224776 8224895 -144312364 + MIR SINE MIR 36 159 -109 3 647 641 182 106 0 chr5 8225148 8225280 -144311979 - B1_Mur1 SINE Alu 0 149 4 3 647 249 57 0 0 chr5 8225941 8225976 -144311283 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 647 551 282 0 22 chr5 8225993 8226127 -144311132 + ID_B1 SINE B4 94 224 0 3 647 460 281 7 62 chr5 8226146 8226290 -144310969 + B1F SINE Alu 1 136 -13 3 647 1362 276 29 2 chr5 8226298 8226727 -144310532 + Lx8 LINE L1 6065 6500 -973 3 647 223 231 135 0 chr5 8227563 8227615 -144309644 + B1F SINE Alu 39 97 -52 3 647 203 167 0 0 chr5 8228089 8228131 -144309128 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 3 647 501 275 12 48 chr5 8228766 8228934 -144308325 + RSINE1 SINE B4 3 164 -1 3 647 582 41 0 0 chr5 8228942 8229015 -144308244 + (GA)n Simple_repeat Simple_repeat 2 74 0 3 647 1931 32 24 4 chr5 8229125 8229373 -144307886 + L1Md_F3 LINE L1 6332 6584 0 3 647 225 65 0 0 chr5 8230515 8230546 -144306713 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 647 356 304 35 9 chr5 8230731 8230847 -144306412 + PB1D7 SINE Alu 2 120 0 3 647 716 264 71 34 chr5 8231261 8231527 -144305732 - B4A SINE B4 -16 276 1 3 647 227 31 0 30 chr5 8231542 8231575 -144305684 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 3 647 305 271 35 12 chr5 8231814 8231900 -144305359 + L1MC5 LINE L1 7406 7493 -468 3 647 840 92 0 0 chr5 8232907 8233026 -144304233 + (GGAA)n Simple_repeat Simple_repeat 4 122 0 3 647 213 159 0 22 chr5 8233170 8233215 -144304044 + T-rich Low_complexity Low_complexity 2 45 0 3 647 580 242 52 7 chr5 8233335 8233489 -144303770 + RSINE1 SINE B4 3 163 -2 3 647 743 267 47 0 chr5 8233624 8233815 -144303444 - B3 SINE B2 -6 210 11 3 647 743 308 73 38 chr5 8233817 8234188 -144303071 + Lx7 LINE L1 6140 6523 -1173 3 647 445 81 0 13 chr5 8234514 8234589 -144302670 + L1_Mus4 LINE L1 6550 6623 -13 3 647 1000 199 0 22 chr5 8234988 8235219 -144302040 + L1VL1 LINE L1 17 242 -6180 3 647 231 286 79 30 chr5 8235219 8235320 -144301939 - IAPLTR4 LTR ERVK -36 309 204 3 647 30025 74 12 5 chr5 8235320 8240116 -144297143 + L1Md_F2 LINE L1 756 5586 -297 3 647 7350 60 6 74 chr5 8240116 8241175 -144296084 + L1Md_F2 LINE L1 5587 6573 -9 3 647 554 276 116 0 chr5 8241298 8241479 -144295780 - B3 SINE B2 0 216 15 3 647 271 289 65 100 chr5 8241491 8241691 -144295568 + L2 LINE L2 1074 1266 -2153 3 647 274 286 103 29 chr5 8242169 8242334 -144294925 + MLT1H1-int LTR MaLR 481 625 -864 3 647 326 335 156 0 chr5 8242486 8242659 -144294600 + MLT1H1-int LTR MaLR 581 780 -629 3 647 3328 213 49 99 chr5 8243014 8243965 -144293294 + RMER1A Other Other 11 906 -124 3 647 441 0 0 0 chr5 8243965 8244014 -144293245 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 647 3328 213 49 99 chr5 8244014 8244130 -144293129 + RMER1A Other Other 907 1023 -7 3 647 494 266 26 17 chr5 8244248 8244363 -144292896 + PB1D10 SINE Alu 1 116 -1 3 647 268 228 100 12 chr5 8244734 8244814 -144292445 + MLT1H1 LTR MaLR 8 94 -461 3 647 924 244 67 78 chr5 8245893 8246307 -144290952 + ORR1C2 LTR MaLR 1 392 -2 3 647 416 274 0 21 chr5 8246818 8246915 -144290344 - B4 SINE B4 -197 95 1 3 647 2064 322 65 27 chr5 8246924 8248028 -144289231 - Lx8 LINE L1 0 7473 6328 3 647 215 61 0 29 chr5 8248046 8248080 -144289179 + (GTTTG)n Simple_repeat Simple_repeat 5 37 0 3 647 342 287 106 42 chr5 8248134 8248323 -144288936 - Lx8 LINE L1 -1099 6374 6174 3 647 383 226 10 0 chr5 8248323 8248425 -144288834 + (TATATG)n Simple_repeat Simple_repeat 1 103 0 3 647 1154 251 44 20 chr5 8248639 8248936 -144288323 - Lx6 LINE L1 -2 7458 7155 3 647 277 296 14 0 chr5 8249032 8249103 -144288156 + PB1D10 SINE Alu 1 72 -45 3 647 353 291 68 0 chr5 8249149 8249252 -144288007 + PB1D10 SINE Alu 1 110 -7 3 647 1089 322 223 62 chr5 8249340 8250260 -144286999 + L2 LINE L2 1 1019 -2400 3 647 859 270 15 0 chr5 8250260 8250456 -144286803 - B3 SINE B2 -17 199 1 3 647 1089 322 223 62 chr5 8250456 8251906 -144285353 + L2 LINE L2 1020 2754 -665 3 647 21 57 0 0 chr5 8252027 8252062 -144285197 + AT_rich Low_complexity Low_complexity 1 35 0 3 647 25 75 0 0 chr5 8252074 8252127 -144285132 + AT_rich Low_complexity Low_complexity 1 53 0 3 647 281 327 67 9 chr5 8252384 8252489 -144284770 + B1F SINE Alu 37 147 -2 3 647 313 248 69 44 chr5 8252722 8252882 -144284377 + L1ME4a LINE L1 5956 6119 -5 3 647 930 185 136 0 chr5 8252993 8253177 -144284082 + B3 SINE B2 1 209 -7 3 647 420 294 72 14 chr5 8253256 8253394 -144283865 + B1F1 SINE Alu 4 149 0 3 647 21 36 0 0 chr5 8253485 8253513 -144283746 + AT_rich Low_complexity Low_complexity 1 28 0 3 647 257 350 91 14 chr5 8253593 8253802 -144283457 - MIR SINE MIR -26 236 12 3 647 324 289 102 10 chr5 8254207 8254305 -144282954 - PB1D10 SINE Alu -10 107 1 3 647 389 260 39 44 chr5 8254372 8254577 -144282682 - HAL1 LINE L1 -984 1523 1320 3 647 214 214 0 45 chr5 8254602 8254642 -144282617 + ID4 SINE ID 3 40 -43 3 647 1270 86 0 0 chr5 8254642 8254816 -144282443 + ORR1A2 LTR MaLR 1 174 -153 3 647 2376 126 77 0 chr5 8255677 8256211 -144281048 - Lx2B LINE L1 -922 6078 5484 3 647 1153 175 94 5 chr5 8256211 8256423 -144280836 + RLTR26 LTR ERVK 1 231 -411 3 647 1028 200 54 5 chr5 8256423 8256609 -144280650 + RLTR26 LTR ERVK 350 544 -98 3 647 765 177 60 18 chr5 8256582 8256749 -144280510 + RLTR26 LTR ERVK 469 642 0 3 647 767 178 249 0 chr5 8256749 8256946 -144280313 - Lx2B LINE L1 -397 5486 5241 3 80 5004 134 31 6 chr5 8256946 8257749 -144279510 + Lx3C LINE L1 6146 6968 -8 3 648 446 88 15 0 chr5 8257915 8257983 -144279276 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 3 648 36724 10 1 7 chr5 8258754 8264370 -144272889 + L1Md_A LINE L1 7 5586 -297 3 648 8908 11 0 0 chr5 8264370 8265366 -144271893 + L1Md_A LINE L1 5587 6582 0 3 648 450 0 0 0 chr5 8265966 8266016 -144271243 + (TAA)n Simple_repeat Simple_repeat 2 51 0 3 648 189 306 194 75 chr5 8266132 8266333 -144270926 - MIRb SINE MIR -17 251 27 3 648 33815 36 0 0 chr5 8266601 8271799 -144265460 + L1Md_T LINE L1 295 5589 -297 3 648 9032 5 0 0 chr5 8271799 8272795 -144264464 + L1Md_T LINE L1 5590 6585 0 3 648 1482 274 102 40 chr5 8272819 8273643 -144263616 + L1MA8 LINE L1 5054 5939 -352 3 648 594 203 55 0 chr5 8273708 8273836 -144263423 + URR1A DNA MER1_type 25 159 -67 3 648 245 314 40 48 chr5 8273729 8273853 -144263406 - CYRA11_Mm Unknown Y-chromosome -272 345 223 3 648 287 243 90 36 chr5 8274107 8274218 -144263041 + PB1D10 SINE Alu 1 117 0 3 648 6829 27 5 4 chr5 8275258 8276069 -144261190 + L1Md_F3 LINE L1 5759 6570 -14 3 648 3761 181 82 58 chr5 8276260 8277091 -144260168 + RMER13A LTR ERVK 3 853 -7 3 648 438 259 37 9 chr5 8277480 8277589 -144259670 - PB1D10 SINE Alu -5 112 1 3 648 7510 64 2 0 chr5 8278396 8279406 -144257853 + L1Md_F2 LINE L1 4575 5586 -297 3 648 7687 61 9 6 chr5 8279406 8280397 -144256862 + L1Md_F2 LINE L1 5587 6580 -2 3 648 826 331 131 22 chr5 8280408 8280942 -144256317 + MLT1E1A LTR MaLR 74 665 -15 3 648 875 231 31 0 chr5 8281586 8281781 -144255478 - B3 SINE B2 -14 202 2 4 648 2916 71 0 3 chr5 8281811 8282190 -144255069 + L1_Mus2 LINE L1 6188 6565 -1 4 648 258 271 57 0 chr5 8282627 8282697 -144254562 - ID4_ SINE ID -9 74 1 4 648 28 61 0 0 chr5 8283612 8283661 -144253598 + AT_rich Low_complexity Low_complexity 1 49 0 4 648 604 223 18 0 chr5 8283687 8283799 -144253460 - B1_Mur3 SINE Alu -9 140 27 4 648 19842 112 11 7 chr5 8284436 8288291 -144248968 + L1_Mus1 LINE L1 409 4277 -1606 4 648 7248 71 6 0 chr5 8288288 8289658 -144247601 + L1_Mus1 LINE L1 5190 6567 0 4 648 594 103 0 0 chr5 8289661 8289748 -144247511 + (GAGAA)n Simple_repeat Simple_repeat 4 90 0 4 648 313 337 34 0 chr5 8290631 8290720 -144246539 + PB1D10 SINE Alu 10 101 -16 4 648 438 20 0 0 chr5 8290765 8290816 -144246443 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 648 538 179 211 53 chr5 8290871 8291042 -144246217 + B3A SINE B2 1 198 0 4 648 910 232 43 5 chr5 8291076 8291284 -144245975 + B3 SINE B2 1 216 0 4 648 28 0 0 0 chr5 8291284 8291312 -144245947 + AT_rich Low_complexity Low_complexity 1 28 0 4 648 723 150 54 7 chr5 8291327 8291475 -144245784 + Lx LINE L1 6495 6649 -5 4 648 192 200 0 0 chr5 8291948 8291988 -144245271 + (CACG)n Simple_repeat Simple_repeat 3 42 0 4 648 354 256 99 15 chr5 8292589 8292720 -144244539 + MLT1A0 LTR MaLR 224 365 0 4 648 26 88 0 0 chr5 8293115 8293183 -144244076 + AT_rich Low_complexity Low_complexity 1 68 0 4 648 24 32 0 0 chr5 8293219 8293250 -144244009 + AT_rich Low_complexity Low_complexity 1 31 0 4 648 30 97 0 0 chr5 8294031 8294124 -144243135 + AT_rich Low_complexity Low_complexity 1 93 0 4 648 356 291 11 11 chr5 8294976 8295063 -144242196 - B1F1 SINE Alu -36 113 27 4 648 415 121 30 20 chr5 8295420 8295521 -144241738 + (TA)n Simple_repeat Simple_repeat 2 103 0 4 648 408 174 296 0 chr5 8296404 8296502 -144240757 + B4A SINE B4 18 144 -148 4 648 2644 135 33 47 chr5 8296676 8297165 -144240094 + RLTR45 LTR ERVK 1 482 0 4 648 2506 52 9 0 chr5 8297379 8297704 -144239555 - ORR1A1 LTR MaLR -18 328 1 4 648 324 0 0 0 chr5 8298669 8298705 -144238554 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 648 337 279 92 92 chr5 8298821 8299082 -144238177 + L1MCa LINE L1 958 1218 -5290 4 648 416 249 108 12 chr5 8299167 8299334 -144237925 + L1MCa LINE L1 1286 1468 -5040 4 648 1029 302 101 39 chr5 8299825 8300596 -144236663 + Arthur1 DNA Tip100 2856 3674 -273 4 648 868 284 29 8 chr5 8300755 8300993 -144236266 - MTD LTR MaLR -67 352 110 4 648 30986 80 2 6 chr5 8300995 8305974 -144231285 + L1Md_F2 LINE L1 631 5585 -298 4 648 8028 49 2 0 chr5 8305975 8306966 -144230293 + L1Md_F2 LINE L1 5587 6579 -3 4 648 24 0 0 0 chr5 8306966 8306990 -144230269 + AT_rich Low_complexity Low_complexity 1 24 0 4 648 363 228 25 66 chr5 8306990 8307112 -144230147 - MTD LTR MaLR -301 120 4 4 648 198 167 0 0 chr5 8308112 8308148 -144229111 + GA-rich Low_complexity Low_complexity 3 38 0 4 648 440 234 9 26 chr5 8308375 8308489 -144228770 + PB1D10 SINE Alu 5 116 -1 4 648 313 231 94 33 chr5 8308872 8309013 -144228246 + Lx5 LINE L1 6385 6453 -597 4 648 1191 99 0 0 chr5 8309013 8309185 -144228074 + (GGGAA)n Simple_repeat Simple_repeat 5 176 0 4 648 2071 236 89 4 chr5 8309185 8309749 -144227510 + Lx5 LINE L1 6486 7050 0 4 648 361 261 134 64 chr5 8310213 8310385 -144226874 - B3A SINE B2 -1 197 14 4 648 334 255 71 18 chr5 8311109 8311221 -144226038 + B1F SINE Alu 1 118 -31 4 648 363 73 0 0 chr5 8311278 8311333 -144225926 + (TCTCTG)n Simple_repeat Simple_repeat 2 56 0 4 648 468 86 0 0 chr5 8311333 8311403 -144225856 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 648 189 344 158 7 chr5 8312407 8312559 -144224700 - MIRc SINE MIR -55 213 39 4 648 254 250 0 14 chr5 8314042 8314111 -144223148 - tRNA-Ala-GCA tRNA tRNA -7 68 1 4 648 439 296 21 7 chr5 8314700 8314843 -144222416 + B1F1 SINE Alu 5 149 0 4 648 392 331 43 6 chr5 8315002 8315163 -144222096 - MER46C DNA MER2_type 0 338 172 4 648 237 283 15 4 chr5 8315208 8315274 -144221985 + MLT1E3 LTR MaLR 1 64 -616 4 648 414 0 0 0 chr5 8315664 8315710 -144221549 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 648 852 114 0 0 chr5 8315784 8315933 -144221326 + (TC)n Simple_repeat Simple_repeat 1 149 0 4 648 198 0 0 0 chr5 8315933 8315954 -144221305 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 648 198 175 50 0 chr5 8316613 8316653 -144220606 - MER5B DNA MER1_type -136 42 1 4 648 318 26 0 0 chr5 8317268 8317307 -144219952 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 648 501 17 0 0 chr5 8317717 8317775 -144219484 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 648 365 216 100 7 chr5 8318344 8318484 -144218775 + Lx7 LINE L1 7544 7696 0 4 648 480 231 9 9 chr5 8318576 8318681 -144218578 - B1F SINE Alu -36 113 9 4 648 209 100 50 0 chr5 8318928 8318968 -144218291 + (TATG)n Simple_repeat Simple_repeat 1 42 0 4 648 3101 83 2 0 chr5 8318968 8319367 -144217892 - MTB LTR MaLR 0 400 1 4 648 7089 122 68 96 chr5 8319367 8321170 -144216089 - MTB-int LTR MaLR -425 1538 1 4 648 2151 105 12 22 chr5 8321174 8321496 -144215763 - MTB LTR MaLR -8 319 1 4 648 400 339 87 0 chr5 8321537 8321652 -144215607 - B1F1 SINE Alu -2 147 23 4 648 600 230 72 0 chr5 8321660 8321799 -144215460 - B1F SINE Alu 0 149 1 4 648 365 310 0 0 chr5 8323261 8323348 -144213911 - PB1 SINE Alu -30 97 11 4 648 1032 64 42 21 chr5 8323893 8324037 -144213222 + B1_Mus2 SINE Alu 1 147 0 4 648 25 0 0 0 chr5 8324093 8324118 -144213141 + AT_rich Low_complexity Low_complexity 1 25 0 4 648 257 396 10 40 chr5 8324185 8324285 -144212974 - B1F2 SINE Alu -51 98 2 4 648 243 0 0 0 chr5 8324682 8324709 -144212550 + (TGG)n Simple_repeat Simple_repeat 3 29 0 4 648 366 164 24 49 chr5 8325073 8325184 -144212075 + Lx LINE L1 6460 6653 -1 4 648 2503 84 34 3 chr5 8325246 8325602 -144211657 + Lx2 LINE L1 6630 6996 -1 4 648 277 282 89 55 chr5 8325740 8326013 -144211246 + L1M5 LINE L1 5563 5848 -596 4 648 387 153 71 0 chr5 8326021 8326119 -144211140 + GA-rich Low_complexity Low_complexity 3 107 0 4 648 194 0 39 0 chr5 8327379 8327405 -144209854 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 4 648 675 288 29 29 chr5 8327470 8327742 -144209517 + Lx7 LINE L1 5626 5897 -1799 4 648 530 266 37 88 chr5 8328121 8328418 -144208841 + Lx8 LINE L1 6129 6410 -1063 4 648 195 330 0 0 chr5 8328437 8328543 -144208716 + (CA)n Simple_repeat Simple_repeat 1 106 0 4 648 415 249 109 34 chr5 8328549 8328724 -144208535 + Lx8 LINE L1 6407 6594 -879 4 648 770 182 44 6 chr5 8328726 8328886 -144208373 + ORR1C2 LTR MaLR 219 384 0 4 648 593 319 119 0 chr5 8328892 8329143 -144208116 + Lx8 LINE L1 7072 7352 -121 4 648 425 326 65 0 chr5 8329557 8329695 -144207564 + RSINE1 SINE B4 17 163 -2 4 648 881 280 118 23 chr5 8331541 8331888 -144205371 - MLT1B LTR MaLR -10 380 1 4 648 423 308 92 13 chr5 8332425 8332741 -144204518 - L1MA5 LINE L1 0 6300 5960 4 648 479 239 6 22 chr5 8332741 8332921 -144204338 + CT-rich Low_complexity Low_complexity 2 178 0 4 648 268 242 118 43 chr5 8332869 8333055 -144204204 - L1MA5 LINE L1 -289 6011 5812 4 648 246 116 0 0 chr5 8333236 8333279 -144203980 + (T)n Simple_repeat Simple_repeat 1 43 0 4 648 1265 54 0 13 chr5 8333280 8333429 -144203830 - B1_Mus1 SINE Alu 0 148 2 4 648 3088 189 40 44 chr5 8333496 8334217 -144203042 + RLTR13A LTR ERVK 1 718 -137 4 648 33246 70 3 4 chr5 8334220 8339403 -144197856 + L1Md_Gf LINE L1 285 5561 -325 4 648 626 247 12 29 chr5 8339403 8339431 -144197828 + RLTR13A LTR ERVK 791 816 -142 4 648 8435 56 1 2 chr5 8339431 8340428 -144196831 + L1Md_F2 LINE L1 5587 6582 0 4 648 943 106 21 0 chr5 8340428 8340570 -144196689 + RLTR13B1 LTR ERVK 749 893 0 4 648 1374 111 0 0 chr5 8340718 8340908 -144196351 - L1_Mm LINE L1 -280 5603 5414 4 648 352 331 153 35 chr5 8340994 8341282 -144195977 + MLT1D LTR MaLR 4 325 -180 4 648 342 266 100 9 chr5 8341310 8341420 -144195839 + RSINE1 SINE B4 5 124 -41 4 648 259 304 0 42 chr5 8341472 8341568 -144195691 + MLT1D LTR MaLR 414 505 0 4 648 268 278 0 58 chr5 8341730 8341833 -144195426 - MLT1A1 LTR MaLR -5 403 307 4 648 652 207 16 47 chr5 8341946 8342087 -144195172 + B1_Mur2 SINE Alu 5 142 -7 4 648 3243 58 2 18 chr5 8342484 8342884 -144194375 + L1_Mus1 LINE L1 6174 6567 0 4 648 234 306 0 0 chr5 8343059 8343121 -144194138 + ID4_ SINE ID 12 73 -10 4 648 2593 144 78 35 chr5 8344870 8345360 -144191899 + RMER1B Other Other 552 1062 -4 4 648 226 380 17 46 chr5 8345853 8346027 -144191232 - MER5B DNA MER1_type -7 171 3 4 648 403 313 104 0 chr5 8346211 8346345 -144190914 - B1F1 SINE Alu 0 149 2 4 648 252 0 0 0 chr5 8346540 8346568 -144190691 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 648 218 222 22 0 chr5 8346843 8346888 -144190371 - B4 SINE B4 -245 47 2 4 648 210 150 0 0 chr5 8348104 8348144 -144189115 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 648 514 230 96 7 chr5 8348874 8349010 -144188249 + B1F SINE Alu 1 148 -1 4 648 248 350 0 12 chr5 8350630 8350711 -144186548 + MIR SINE MIR 64 143 -65 4 648 401 310 78 0 chr5 8352001 8352130 -144185129 + B1F1 SINE Alu 2 140 -9 4 648 412 124 26 41 chr5 8352109 8352211 -144185048 - PB1D9 SINE Alu -54 95 2 4 648 351 253 27 0 chr5 8352382 8352457 -144184802 + ID4_ SINE ID 2 78 -5 4 648 278 295 0 0 chr5 8352612 8352690 -144184569 + L2a LINE L2 3348 3425 -1 4 648 468 333 14 0 chr5 8352790 8352931 -144184328 + B1F SINE Alu 7 149 0 4 648 333 224 24 0 chr5 8353267 8353392 -144183867 + (CA)n Simple_repeat Simple_repeat 1 128 0 4 648 285 29 0 0 chr5 8353483 8353517 -144183742 + (A)n Simple_repeat Simple_repeat 1 34 0 5 648 3018 95 16 56 chr5 8353724 8354170 -144183089 + L1_Mus2 LINE L1 6139 6566 0 5 648 464 0 0 18 chr5 8354210 8354267 -144182992 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 5 648 296 221 26 13 chr5 8354440 8354518 -144182741 + L1MB7 LINE L1 6099 6177 -7 5 648 521 231 174 11 chr5 8354806 8354990 -144182269 + L1MB8 LINE L1 5666 5879 -299 5 648 503 298 6 6 chr5 8355050 8355209 -144182050 + RSINE1 SINE B4 4 162 -3 5 648 386 296 8 77 chr5 8355595 8355712 -144181547 + ID_B1 SINE B4 64 172 -52 5 648 628 255 6 78 chr5 8355745 8355911 -144181348 + RSINE1 SINE B4 11 164 -1 5 648 339 150 0 0 chr5 8355912 8355972 -144181287 + (CATA)n Simple_repeat Simple_repeat 3 62 0 5 648 230 132 0 19 chr5 8357066 8357120 -144180139 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 648 221 281 12 25 chr5 8358990 8359088 -144178171 + GA-rich Low_complexity Low_complexity 1 96 0 5 648 190 222 0 0 chr5 8360540 8360576 -144176683 + MIRb SINE MIR 135 170 -98 5 648 281 89 0 22 chr5 8361910 8361956 -144175303 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 648 585 283 0 23 chr5 8362061 8362191 -144175068 + RSINE1 SINE B4 5 131 -34 5 648 228 111 0 0 chr5 8362192 8362228 -144175031 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 648 500 0 17 0 chr5 8362228 8362288 -144174971 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 5 648 21 0 0 0 chr5 8362335 8362356 -144174903 + AT_rich Low_complexity Low_complexity 1 21 0 5 648 305 214 98 39 chr5 8365434 8365536 -144171723 + L1MC5 LINE L1 7404 7511 -450 5 648 442 277 132 48 chr5 8365537 8365640 -144171619 + L1MC5 LINE L1 7461 7573 -388 5 648 387 0 0 0 chr5 8365640 8365683 -144171576 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 648 442 277 132 48 chr5 8365683 8365996 -144171263 + L1MC5 LINE L1 7574 7912 -49 5 648 357 153 0 0 chr5 8367366 8367438 -144169821 + GA-rich Low_complexity Low_complexity 4 75 0 5 648 183 80 0 0 chr5 8367660 8367685 -144169574 + (A)n Simple_repeat Simple_repeat 1 25 0 5 648 23 0 0 0 chr5 8367762 8367785 -144169474 + AT_rich Low_complexity Low_complexity 1 23 0 5 648 688 249 67 46 chr5 8368627 8368821 -144168438 - B3 SINE B2 -10 206 9 5 648 1950 127 13 29 chr5 8369060 8369369 -144167890 + ORR1A2 LTR MaLR 24 327 0 5 648 294 29 0 0 chr5 8369494 8369529 -144167730 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 648 3933 147 66 39 chr5 8369540 8369950 -144167309 + L1_Mur3 LINE L1 3759 4181 -1699 5 648 2395 159 8 11 chr5 8369950 8370331 -144166928 + RLTR14 LTR ERV1 1 380 -2 5 648 3933 147 66 39 chr5 8370331 8370698 -144166561 + L1_Mur3 LINE L1 4182 4557 -1323 5 648 614 324 99 39 chr5 8370960 8371114 -144166145 - MLT1A0 LTR MaLR -54 311 147 5 648 354 23 0 0 chr5 8371114 8371157 -144166102 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 648 614 324 99 39 chr5 8371157 8371285 -144165974 - MLT1A0 LTR MaLR -219 146 12 5 648 296 224 0 82 chr5 8371449 8371522 -144165737 - ID_B1 SINE B4 -54 170 104 5 648 440 234 28 11 chr5 8371606 8371783 -144165476 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 648 313 306 28 28 chr5 8371785 8371997 -144165262 - Lx9 LINE L1 -126 7518 7307 5 648 533 15 15 0 chr5 8372021 8372087 -144165172 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 648 2748 26 0 0 chr5 8372182 8372485 -144164774 + L1Md_A LINE L1 6280 6582 0 5 648 955 233 48 14 chr5 8372965 8373174 -144164085 - B3 SINE B2 0 216 1 5 648 400 276 51 30 chr5 8373309 8373544 -144163715 + L1MC LINE L1 3120 3359 -2787 5 648 400 314 85 27 chr5 8373544 8373839 -144163420 + L1MC LINE L1 3470 3781 -2365 5 648 445 321 69 26 chr5 8373845 8374034 -144163225 + ID_B1 SINE B4 21 217 -7 5 648 599 258 134 1 chr5 8374046 8374329 -144162930 + L1MC LINE L1 3797 4115 -2031 5 648 305 298 57 85 chr5 8374364 8374610 -144162649 + L1MC LINE L1 4937 5175 -971 5 648 240 35 0 0 chr5 8374650 8374679 -144162580 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 5 648 1236 187 36 57 chr5 8374695 8374996 -144162263 + Lx7 LINE L1 7402 7696 0 5 648 450 232 49 14 chr5 8375001 8375145 -144162114 + L1MC LINE L1 5158 5306 -840 5 648 540 218 62 39 chr5 8375188 8375317 -144161942 + ID_B1 SINE B4 92 223 -1 5 648 210 294 115 23 chr5 8375347 8375434 -144161825 + B1F2 SINE Alu 1 95 -54 5 648 411 216 49 16 chr5 8375477 8375578 -144161681 - B1F SINE Alu -13 107 5 5 648 243 243 27 0 chr5 8375581 8375655 -144161604 - L1MD LINE L1 -3108 3038 2963 5 648 2423 205 75 2 chr5 8375772 8376290 -144160969 - RMER1C Other Other -1 1341 786 5 648 7849 60 36 52 chr5 8376312 8377435 -144159824 - RLTR10-int LTR ERVK -565 1422 318 5 648 2213 59 122 6 chr5 8377435 8377778 -144159481 - RLTR10 LTR ERVK -7 383 1 5 648 956 222 8 61 chr5 8378045 8378290 -144158969 - RMER1C Other Other -1046 296 65 5 648 992 218 92 22 chr5 8379040 8379355 -144157904 + RLTR15 LTR ERVK 1 337 -22 5 648 345 24 0 0 chr5 8379368 8379410 -144157849 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 648 9089 171 90 25 chr5 8379756 8380944 -144156315 + L1_Mur3 LINE L1 888 2586 -3294 5 648 2980 52 9 0 chr5 8380944 8381287 -144155972 + ORR1A1 LTR MaLR 1 346 0 5 648 9089 170 41 27 chr5 8381287 8382160 -144155099 + L1_Mur3 LINE L1 2587 3475 -2405 5 648 36813 63 17 2 chr5 8382163 8387505 -144149754 + L1Md_T LINE L1 69 5589 -297 5 648 8647 53 0 0 chr5 8387505 8388501 -144148758 + L1Md_T LINE L1 5590 6585 0 5 648 552 101 15 131 chr5 8388501 8388563 -144148696 + L1_Mur3 LINE L1 3466 3520 -2360 5 1 1166 95 38 27 chr5 8388563 8388747 -144148512 - B2_Mm1t SINE B2 -5 188 3 5 649 552 101 15 131 chr5 8388747 8388821 -144148438 + L1_Mur3 LINE L1 3521 3586 -2294 5 649 333 239 216 26 chr5 8389924 8390040 -144147219 + B1F1 SINE Alu 10 147 -2 5 649 24 53 0 0 chr5 8390373 8390411 -144146848 + AT_rich Low_complexity Low_complexity 1 38 0 5 649 2300 216 25 36 chr5 8390658 8391645 -144145614 + Lx6 LINE L1 5357 6369 -689 5 649 1024 326 36 67 chr5 8391663 8392088 -144145171 + Lx6 LINE L1 6483 6904 -146 5 649 255 125 0 0 chr5 8392088 8392128 -144145131 + (TATG)n Simple_repeat Simple_repeat 4 43 0 5 649 1024 326 36 67 chr5 8392128 8392255 -144145004 + Lx6 LINE L1 6905 7018 -32 5 649 205 208 56 0 chr5 8392259 8392331 -144144928 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 649 30 27 0 0 chr5 8392353 8392390 -144144869 + AT_rich Low_complexity Low_complexity 1 37 0 5 649 1350 163 216 19 chr5 8392507 8392826 -144144433 - RLTR14 LTR ERV1 0 382 1 5 649 520 211 48 0 chr5 8393611 8393715 -144143544 - PB1D10 SINE Alu -7 110 2 5 649 1176 238 131 43 chr5 8394602 8394976 -144142283 - MTD LTR MaLR -12 407 1 5 649 21 36 0 0 chr5 8395134 8395162 -144142097 + AT_rich Low_complexity Low_complexity 1 28 0 5 649 333 0 0 0 chr5 8395278 8395315 -144141944 + (TATG)n Simple_repeat Simple_repeat 3 39 0 5 649 437 338 66 0 chr5 8395958 8396094 -144141165 + RSINE1 SINE B4 3 147 -18 5 649 1099 69 21 0 chr5 8396692 8396836 -144140423 + B1_Mm SINE Alu 1 147 0 5 649 225 94 0 0 chr5 8396852 8396884 -144140375 + (A)n Simple_repeat Simple_repeat 1 32 0 5 649 323 209 170 0 chr5 8399951 8400104 -144137155 + Lx9 LINE L1 7458 7636 -8 5 649 514 309 47 21 chr5 8400322 8400514 -144136745 + B3A SINE B2 2 198 0 5 649 958 129 0 0 chr5 8400662 8400809 -144136450 - B1_Mus1 SINE Alu 0 148 2 5 649 430 215 118 27 chr5 8400850 8400960 -144136299 + PB1D9 SINE Alu 1 120 0 5 649 654 164 104 0 chr5 8401069 8401084 -144136175 + B1_Mur3 SINE Alu 1 15 -134 5 649 807 93 0 0 chr5 8401084 8401202 -144136057 + (CA)n Simple_repeat Simple_repeat 1 118 0 5 649 654 164 104 0 chr5 8401202 8401320 -144135939 + B1_Mur3 SINE Alu 16 146 -3 5 649 22 35 0 0 chr5 8402788 8402817 -144134442 + AT_rich Low_complexity Low_complexity 1 29 0 5 649 1084 181 37 0 chr5 8404072 8404288 -144132971 - URR1B DNA MER1_type 0 225 2 5 649 308 254 107 0 chr5 8404432 8404554 -144132705 - L1MB3 LINE L1 -233 5950 5816 5 649 540 305 16 31 chr5 8405328 8405521 -144131738 + B3A SINE B2 1 190 -8 5 649 251 184 20 0 chr5 8406491 8406540 -144130719 + L1MEf LINE L1 361 410 -5790 5 649 826 184 7 13 chr5 8406825 8406974 -144130285 + B1_Mur2 SINE Alu 2 149 0 5 649 845 114 21 7 chr5 8406975 8407116 -144130143 + B2_Mm1t SINE B2 51 193 0 5 649 252 308 23 45 chr5 8407237 8407414 -144129845 + L1MEf LINE L1 883 1055 -5145 5 649 251 85 0 21 chr5 8408140 8408188 -144129071 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 5 649 482 196 83 9 chr5 8408752 8408860 -144128399 - PB1D9 SINE Alu -3 117 2 5 649 920 300 16 95 chr5 8409074 8409391 -144127868 - B4A SINE B4 0 292 1 5 649 850 239 0 12 chr5 8409441 8409606 -144127653 - RSINE1 SINE B4 0 165 3 5 649 342 265 133 0 chr5 8409650 8409748 -144127511 + PB1D9 SINE Alu 10 120 0 5 649 530 247 153 24 chr5 8409804 8409974 -144127285 - ID_B1 SINE B4 -15 209 18 5 649 202 51 77 0 chr5 8410078 8410117 -144127142 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 5 649 336 208 66 53 chr5 8410411 8410487 -144126772 + ID_B1 SINE B4 148 224 0 5 649 221 222 22 0 chr5 8410540 8410585 -144126674 - ID4_ SINE ID -36 47 2 5 649 2393 58 3 6 chr5 8410691 8411004 -144126255 - L1_Mus2 LINE L1 0 6566 6255 5 649 219 342 121 43 chr5 8411949 8412065 -144125194 + PB1 SINE Alu 1 125 -2 5 649 1085 76 14 7 chr5 8412414 8412560 -144124699 - B1_Mm SINE Alu 0 147 1 5 649 290 302 96 48 chr5 8412768 8412914 -144124345 + MER3 DNA MER1_type 11 163 -46 5 649 449 303 63 38 chr5 8413219 8413377 -144123882 + RSINE1 SINE B4 3 164 -1 5 649 333 0 0 0 chr5 8413668 8413705 -144123554 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 649 760 257 37 37 chr5 8413749 8413963 -144123296 + B3 SINE B2 2 215 -1 5 649 848 109 224 0 chr5 8413998 8414163 -144123096 + URR1A DNA MER1_type 1 202 -24 5 649 699 254 46 36 chr5 8414288 8414484 -144122775 - MTEa LTR MaLR 0 379 182 5 649 360 144 66 7 chr5 8414530 8414607 -144122652 - MTD LTR MaLR -35 384 247 5 649 1074 162 32 0 chr5 8414607 8414792 -144122467 - URR1B DNA MER1_type 0 225 35 5 649 860 244 103 113 chr5 8414799 8415266 -144121993 + RMER4A LTR ERVK 1 462 -4 5 649 427 185 62 0 chr5 8415321 8415402 -144121857 - MTD LTR MaLR -132 287 202 5 649 252 238 253 6 chr5 8415403 8415585 -144121674 - L1M3 LINE L1 -478 5693 5467 6 649 746 233 82 33 chr5 8415687 8415869 -144121390 - B3 SINE B2 -24 192 2 6 649 425 289 83 38 chr5 8415980 8416113 -144121146 - ID_B1 SINE B4 -67 157 19 6 649 419 220 0 0 chr5 8416263 8416363 -144120896 - L1M3 LINE L1 -1127 5013 4914 6 649 695 217 32 54 chr5 8416563 8416748 -144120511 + B3A SINE B2 10 190 -8 6 649 280 274 0 77 chr5 8416860 8416951 -144120308 + ID_B1 SINE B4 77 160 -64 6 649 314 234 111 50 chr5 8416878 8416977 -144120282 + PB1D10 SINE Alu 9 113 -4 6 649 2152 143 191 72 chr5 8417437 8417950 -144119309 + RMER15 LTR ERVL 2 575 0 6 649 209 163 186 0 chr5 8418174 8418217 -144119042 + L2 LINE L2 92 142 -3277 6 649 1191 55 0 0 chr5 8418435 8418581 -144118678 - B1_Mus2 SINE Alu 0 147 2 6 649 358 273 17 43 chr5 8418791 8418906 -144118353 - PB1D10 SINE Alu -5 112 1 6 649 237 33 0 0 chr5 8418914 8418944 -144118315 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 6 649 1113 59 0 0 chr5 8418944 8419079 -144118180 - B1_Mus1 SINE Alu -13 135 1 6 649 351 264 105 35 chr5 8419612 8419726 -144117533 - U1 snRNA snRNA -34 131 10 6 649 1035 88 0 0 chr5 8420447 8420583 -144116676 + B1_Mm SINE Alu 5 140 -7 6 649 470 222 8 0 chr5 8420682 8420808 -144116451 + (TA)n Simple_repeat Simple_repeat 1 127 0 6 649 229 315 13 27 chr5 8420997 8421072 -144116187 - ID4_ SINE ID -9 74 1 6 649 22 70 0 0 chr5 8422592 8422635 -144114624 + GC_rich Low_complexity Low_complexity 1 43 0 6 649 27 29 0 0 chr5 8422798 8422832 -144114427 + GC_rich Low_complexity Low_complexity 1 34 0 6 649 21 36 0 0 chr5 8422842 8422870 -144114389 + GC_rich Low_complexity Low_complexity 1 28 0 6 649 181 182 0 29 chr5 8423263 8423297 -144113962 + MIRc SINE MIR 120 152 -116 6 649 203 88 29 0 chr5 8424526 8424560 -144112699 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 649 623 214 28 7 chr5 8424927 8425068 -144112191 - B1F SINE Alu -1 148 5 6 649 710 137 23 39 chr5 8425243 8425369 -144111890 - B1_Mur2 SINE Alu 0 149 26 6 649 247 324 66 26 chr5 8425369 8425445 -144111814 + Charlie12 DNA MER1_type 2 80 -2793 6 649 285 232 54 0 chr5 8425380 8425436 -144111823 - RMER30 DNA MER1_type -11 191 133 6 649 190 306 71 0 chr5 8425675 8425760 -144111499 + MIRc SINE MIR 112 202 -66 6 649 668 225 7 0 chr5 8426341 8426479 -144110780 - B1_Mur2 SINE Alu -6 143 5 6 649 211 182 0 43 chr5 8426737 8426783 -144110476 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 6 649 262 256 45 23 chr5 8427152 8427186 -144110073 - BC1_Mm scRNA scRNA -36 116 27 6 649 267 241 19 0 chr5 8427186 8427240 -144110019 - ID SINE ID -142 82 28 6 649 236 170 19 0 chr5 8427300 8427353 -144109906 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 649 288 0 0 0 chr5 8428830 8428862 -144108397 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 649 957 129 6 0 chr5 8428890 8429053 -144108206 - L1_Mur3 LINE L1 -4010 1870 1707 6 649 1531 194 33 20 chr5 8429106 8429501 -144107758 - L1_Mur3 LINE L1 -7265 463 64 6 649 300 269 0 0 chr5 8429664 8429731 -144107528 + ID SINE ID 5 71 -153 6 649 242 355 0 18 chr5 8429665 8429774 -144107485 + BC1_Mm scRNA scRNA 6 112 -40 6 649 213 154 0 0 chr5 8430552 8430591 -144106668 + T-rich Low_complexity Low_complexity 1 39 0 6 649 5141 98 78 9 chr5 8430603 8431399 -144105860 - Lx2 LINE L1 0 6997 6147 6 649 18285 159 26 112 chr5 8431399 8432084 -144105175 - L1VL4 LINE L1 -372 5514 4824 6 649 1197 55 0 7 chr5 8432084 8432231 -144105028 + B1_Mus2 SINE Alu 2 147 0 6 649 18285 159 26 112 chr5 8432231 8432445 -144104814 - L1VL4 LINE L1 -1063 4823 4642 6 649 208 53 26 26 chr5 8432445 8432484 -144104775 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 649 791 48 58 0 chr5 8432484 8432588 -144104671 - B1_Mm SINE Alu -10 137 28 6 649 18285 159 26 112 chr5 8432588 8435823 -144101436 - L1VL4 LINE L1 -1245 4641 1485 6 649 1778 88 84 4 chr5 8435823 8436097 -144101162 - L1_Mus3 LINE L1 0 6638 6343 6 649 18285 133 67 59 chr5 8436097 8437137 -144100122 - L1VL4 LINE L1 -4402 1484 603 6 649 23 0 0 0 chr5 8437274 8437297 -144099962 + AT_rich Low_complexity Low_complexity 1 23 0 6 649 504 258 62 41 chr5 8437434 8437677 -144099582 - L1MD1 LINE L1 -221 6412 6165 6 649 238 268 0 0 chr5 8437783 8437854 -144099405 - L1MD1 LINE L1 -1543 4994 4924 6 649 204 40 0 0 chr5 8437862 8437887 -144099372 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 649 503 233 32 57 chr5 8437903 8438026 -144099233 - B1_Mur2 SINE Alu -29 120 1 6 649 1613 37 0 0 chr5 8438097 8438285 -144098974 - B2_Mm1t SINE B2 -4 189 2 6 649 421 276 76 57 chr5 8438285 8438496 -144098763 - L1MD1 LINE L1 -4049 2584 2370 6 649 23 0 0 0 chr5 8438509 8438532 -144098727 + AT_rich Low_complexity Low_complexity 1 23 0 6 649 381 292 75 5 chr5 8438574 8438760 -144098499 - L1MD1 LINE L1 -5427 1206 1008 6 649 379 306 39 24 chr5 8438878 8439005 -144098254 - L1MD1 LINE L1 -5777 856 728 6 649 842 152 29 17 chr5 8439181 8439355 -144097904 - Lx4B LINE L1 -17 7041 6866 6 649 880 235 79 14 chr5 8439431 8439792 -144097467 - L1MB7 LINE L1 -288 5896 5512 6 649 206 233 0 16 chr5 8439797 8439858 -144097401 + CT-rich Low_complexity Low_complexity 1 60 0 6 649 259 272 114 19 chr5 8439858 8439963 -144097296 - PB1 SINE Alu -7 120 6 6 649 226 187 0 33 chr5 8439996 8440057 -144097202 - L1_Mur3 LINE L1 -743 5435 5359 6 649 21 0 0 0 chr5 8440269 8440290 -144096969 + AT_rich Low_complexity Low_complexity 1 21 0 6 649 506 219 185 23 chr5 8440292 8440465 -144096794 - B3 SINE B2 -15 201 1 6 649 22 0 0 0 chr5 8440484 8440506 -144096753 + AT_rich Low_complexity Low_complexity 1 22 0 6 649 269 261 31 0 chr5 8440912 8440977 -144096282 - MER77 LTR ERVL -36 571 505 6 649 942 134 0 14 chr5 8441157 8441301 -144095958 - B1_Mur4 SINE Alu -7 143 2 6 649 29 0 0 0 chr5 8441737 8441766 -144095493 + AT_rich Low_complexity Low_complexity 1 29 0 6 649 788 246 97 30 chr5 8441928 8442196 -144095063 + B4A SINE B4 1 286 -6 6 649 212 286 242 0 chr5 8442897 8442988 -144094271 + PB1D9 SINE Alu 3 115 -5 6 649 633 215 61 8 chr5 8443390 8443521 -144093738 + U1 snRNA snRNA 3 140 -25 6 649 400 277 30 0 chr5 8444475 8444576 -144092683 - RSINE1 SINE B4 -61 104 1 6 649 1479 180 177 0 chr5 8444750 8445083 -144092176 - ORR1B1 LTR MaLR -2 392 1 6 649 706 206 48 0 chr5 8445238 8445364 -144091895 - B1_Mur1 SINE Alu -16 133 2 6 649 514 275 0 16 chr5 8445394 8445516 -144091743 + PB1D7 SINE Alu 1 120 0 6 649 726 177 199 6 chr5 8445534 8445710 -144091549 + B3 SINE B2 6 215 -1 6 649 403 269 124 28 chr5 8445727 8445872 -144091387 + RSINE1 SINE B4 3 161 -4 6 649 232 262 25 12 chr5 8446422 8446503 -144090756 - ID4 SINE ID 0 83 2 6 649 320 301 181 25 chr5 8446752 8446956 -144090303 - L1MD LINE L1 -2126 4020 3785 6 649 1058 84 14 0 chr5 8448864 8449006 -144088253 - B1_Mus1 SINE Alu -4 144 1 6 649 388 297 25 8 chr5 8449144 8449263 -144087996 + ID_B1 SINE B4 79 199 -25 6 649 225 0 0 0 chr5 8449265 8449290 -144087969 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 649 24 67 0 0 chr5 8449541 8449586 -144087673 + AT_rich Low_complexity Low_complexity 1 45 0 6 649 3102 53 8 5 chr5 8450157 8450552 -144086707 - MTA_Mm LTR MaLR 0 396 1 6 649 326 217 63 45 chr5 8450715 8450826 -144086433 + PB1D9 SINE Alu 1 113 -7 6 649 360 0 0 0 chr5 8451323 8451363 -144085896 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 649 1125 193 153 108 chr5 8451363 8451670 -144085589 - ORR1B1 LTR MaLR -73 321 1 6 649 1062 84 14 0 chr5 8452098 8452241 -144085018 + B1_Mm SINE Alu 1 145 -2 6 649 1684 171 97 17 chr5 8452328 8452679 -144084580 + ORR1C2 LTR MaLR 1 379 -5 6 649 21 0 0 0 chr5 8453010 8453031 -144084228 + AT_rich Low_complexity Low_complexity 1 21 0 6 649 23 54 0 0 chr5 8453455 8453492 -144083767 + AT_rich Low_complexity Low_complexity 1 37 0 6 649 526 227 9 18 chr5 8454280 8454392 -144082867 - RSINE1 SINE B4 -38 127 17 6 649 968 208 12 78 chr5 8454891 8455136 -144082123 - RLTR11A LTR ERVK -65 463 235 6 649 992 274 107 43 chr5 8455142 8455562 -144081697 + RLTR17 LTR ERVK 105 551 -141 6 649 513 178 62 3 chr5 8455631 8455775 -144081484 - RLTR11A LTR ERVK -337 240 98 6 649 24 0 0 0 chr5 8455817 8455841 -144081418 + AT_rich Low_complexity Low_complexity 1 24 0 6 649 745 205 108 89 chr5 8456141 8456344 -144080915 + B3 SINE B2 1 207 -9 6 649 858 288 163 0 chr5 8456642 8456937 -144080322 + ORR1E LTR MaLR 2 344 -15 6 649 328 271 18 21 chr5 8457324 8457452 -144079807 + B4 SINE B4 5 131 -161 6 649 1062 155 77 0 chr5 8457452 8457659 -144079600 + L1_Mur1 LINE L1 586 808 -6174 6 649 1053 68 6 0 chr5 8457659 8457822 -144079437 + L1_Mur1 LINE L1 1173 1336 -5646 6 649 4048 93 3 3 chr5 8457824 8458436 -144078823 - L1_Mur1 LINE L1 -3039 2847 2236 6 649 1093 188 26 35 chr5 8458433 8458798 -144078461 - L1_Mur1 LINE L1 -6029 955 416 6 649 1460 244 16 35 chr5 8458971 8459337 -144077922 - MTC LTR MaLR -58 363 5 6 649 3016 279 95 22 chr5 8459356 8460409 -144076850 - Lx8 LINE L1 -153 7320 6184 6 649 507 56 0 0 chr5 8460409 8460480 -144076779 + (TATG)n Simple_repeat Simple_repeat 2 72 0 6 649 765 104 19 0 chr5 8460480 8460586 -144076673 - PB1D9 SINE Alu -11 109 2 6 649 3016 279 95 22 chr5 8460586 8460626 -144076633 - Lx8 LINE L1 -1290 6183 6147 6 649 792 258 172 42 chr5 8460684 8461137 -144076122 + MT2B LTR ERVL 1 471 -130 6 649 1722 16 0 0 chr5 8461137 8461330 -144075929 - B2_Mm1t SINE B2 0 193 1 6 649 728 230 235 15 chr5 8461330 8461366 -144075893 + MT2B LTR ERVL 376 412 -121 6 649 1052 128 21 26 chr5 8461455 8461647 -144075612 - Lx LINE L1 0 6654 6464 6 649 274 211 76 52 chr5 8461998 8462105 -144075154 + MT2B LTR ERVL 495 601 0 6 649 3381 167 75 27 chr5 8462105 8463056 -144074203 + MERVL_2A-int LTR ERVL 1 996 -4765 6 649 7249 152 48 38 chr5 8463051 8463425 -144073834 + MERVL_2A-int LTR ERVL 1687 2023 -3738 6 649 297 0 0 0 chr5 8463434 8463467 -144073792 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 6 649 1130 75 0 7 chr5 8463467 8463604 -144073655 - B1_Mus2 SINE Alu -9 138 2 6 649 7249 152 48 38 chr5 8463604 8464642 -144072617 + MERVL_2A-int LTR ERVL 2024 3114 -2647 6 649 2078 92 3 74 chr5 8464642 8464993 -144072266 + IAPLTR1a_Mm LTR ERVK 1 326 -11 7 649 4440 53 69 3 chr5 8464994 8465615 -144071644 + IAPEz-int LTR ERVK 1 662 -5819 7 649 424 38 0 0 chr5 8465615 8465668 -144071591 + IAPEz-int LTR ERVK 1359 1411 -5070 7 649 1739 115 4 4 chr5 8465667 8465929 -144071330 + IAPEz-int LTR ERVK 2236 2497 -5183 7 649 871 81 24 0 chr5 8465926 8466049 -144071210 + IAPEz-int LTR ERVK 4785 4910 -2770 7 649 446 66 0 0 chr5 8466049 8466110 -144071149 + IAPEz-int LTR ERVK 3525 3585 -2896 7 649 19902 19 6 0 chr5 8466102 8468454 -144068805 + IAPEz-int LTR ERVK 4117 6481 0 7 649 2057 111 3 72 chr5 8468454 8468815 -144068444 + IAPLTR1a_Mm LTR ERVK 1 336 -1 7 649 1654 129 16 0 chr5 8468815 8469070 -144068189 + MERVL_2A-int LTR ERVL 3111 3369 -2392 6 649 1949 158 71 15 chr5 8469074 8469414 -144067845 - ORR1B2 LTR MaLR -8 359 1 7 649 2061 151 15 0 chr5 8469414 8469752 -144067507 + MERVL_2A-int LTR ERVL 3365 3707 -2054 6 649 1710 194 187 40 chr5 8469761 8470259 -144067000 - RMER4B LTR ERVK -14 571 1 7 649 323 231 54 11 chr5 8470259 8470351 -144066908 - MurERV4-int LTR ERVK 0 5260 5165 7 649 475 159 10 21 chr5 8470383 8470479 -144066780 - RMER4B LTR ERVK -470 115 21 7 649 859 190 33 0 chr5 8470494 8470678 -144066581 + MERVL_2A-int LTR ERVL 3701 3890 -1871 6 649 5892 204 56 16 chr5 8470678 8471998 -144065261 + MERVL_2A-int LTR ERVL 3841 5213 -272 6 649 513 134 319 0 chr5 8472000 8472160 -144065099 + MERVL_2A-int LTR ERVL 5407 5617 -144 6 649 262 148 82 47 chr5 8472160 8472245 -144065014 + ORR1A3-int LTR MaLR 552 639 -1324 7 649 552 248 8 46 chr5 8472291 8472422 -144064837 + MT2A LTR ERVL 1 126 -407 7 649 226 193 35 24 chr5 8472488 8472573 -144064686 + (TA)n Simple_repeat Simple_repeat 1 86 0 7 649 280 146 0 18 chr5 8472573 8472632 -144064627 + MT2B2 LTR ERVL 542 601 0 7 649 495 161 225 17 chr5 8472739 8472859 -144064400 - B1_Mur2 SINE Alu 0 149 5 7 649 298 266 115 61 chr5 8472966 8473114 -144064145 - RSINE1 SINE B4 -6 159 4 7 649 1010 216 162 167 chr5 8473212 8473650 -144063609 + MT2B LTR ERVL 1 517 -84 7 649 195 100 0 0 chr5 8473690 8473720 -144063539 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 649 248 200 0 20 chr5 8473720 8473771 -144063488 + MT2B LTR ERVL 535 584 0 7 649 712 249 75 40 chr5 8474386 8474587 -144062672 - B3 SINE B2 -6 210 3 7 649 346 290 136 43 chr5 8474634 8474796 -144062463 - RMER15 LTR ERVL 0 575 399 7 649 480 295 18 49 chr5 8474884 8475048 -144062211 - RMER15 LTR ERVL -416 159 1 7 649 381 356 75 88 chr5 8475474 8476031 -144061228 - MT2A LTR ERVL -2 552 3 7 649 412 289 58 31 chr5 8476213 8476438 -144060821 - MER34B-int LTR ERV1 -1612 3744 3514 7 649 258 105 0 0 chr5 8476894 8476932 -144060327 + (A)n Simple_repeat Simple_repeat 1 38 0 7 649 1232 87 23 0 chr5 8476939 8477111 -144060148 + B2_Mm2 SINE B2 7 182 -13 7 649 233 83 0 20 chr5 8477142 8477191 -144060068 + B2_Mm2 SINE B2 143 190 -5 7 649 679 273 45 11 chr5 8477191 8477369 -144059890 - B3A SINE B2 -6 192 9 7 649 326 265 0 12 chr5 8477486 8477570 -144059689 - BC1_Mm scRNA scRNA -62 90 8 7 649 358 264 19 19 chr5 8478215 8478342 -144058917 - B3A SINE B2 -68 127 1 7 649 457 240 86 13 chr5 8478359 8478511 -144058748 - Lx8 LINE L1 -141 7332 7170 7 649 3118 37 3 0 chr5 8478835 8479211 -144058048 + L1Md_F2 LINE L1 6192 6568 -14 7 649 485 212 0 29 chr5 8479461 8479563 -144057696 - B3 SINE B2 0 216 118 7 649 588 294 160 21 chr5 8479763 8480045 -144057214 + RMER5 LTR ERV1 165 485 -49 7 649 248 151 36 54 chr5 8480090 8480146 -144057113 - B2_Mm2 SINE B2 -94 101 47 7 649 1267 91 17 0 chr5 8480197 8480373 -144056886 - B2_Mm1t SINE B2 -14 179 1 7 649 354 204 56 11 chr5 8480439 8480528 -144056731 - PB1D9 SINE Alu 0 120 28 7 649 226 292 43 43 chr5 8480521 8480552 -144056707 + ID_B1 SINE B4 55 121 -103 7 649 250 154 135 0 chr5 8480552 8480604 -144056655 + PB1D9 SINE Alu 1 59 -61 7 649 599 128 8 84 chr5 8480650 8480769 -144056490 + B1_Mur4 SINE Alu 41 150 0 7 649 203 0 37 0 chr5 8480770 8480797 -144056462 + (CCAA)n Simple_repeat Simple_repeat 4 31 0 7 649 216 0 0 0 chr5 8480852 8480876 -144056383 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 649 462 242 0 21 chr5 8480896 8480989 -144056270 - RSINE1 SINE B4 -49 116 26 7 649 616 267 103 5 chr5 8481032 8481235 -144056024 - ID_B1 SINE B4 0 224 2 7 649 251 276 91 45 chr5 8482916 8483026 -144054233 - PB1D10 SINE Alu -2 115 1 7 649 367 344 58 7 chr5 8484249 8484404 -144052855 + B4A SINE B4 89 251 -41 7 649 1159 202 43 162 chr5 8484404 8484823 -144052436 + ORR1D2 LTR MaLR 2 370 0 7 649 3601 26 28 7 chr5 8484919 8485346 -144051913 + RLTR10C LTR ERVK 1 436 0 7 649 336 24 0 0 chr5 8485352 8485393 -144051866 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 649 238 313 11 57 chr5 8485430 8485518 -144051741 + RMER5 LTR ERV1 17 100 -434 7 649 1190 169 22 14 chr5 8485520 8485742 -144051517 - MTD LTR MaLR 0 419 196 7 649 1106 138 152 58 chr5 8485750 8486027 -144051232 - RMER1B Other Other -2 1064 762 7 649 1545 280 147 29 chr5 8486082 8486114 -144051145 + L1_Mur3 LINE L1 2095 2122 -3758 7 649 975 133 0 7 chr5 8486114 8486258 -144051001 + B1_Mus1 SINE Alu 5 147 -1 7 649 1545 280 147 29 chr5 8486258 8487408 -144049851 + L1_Mur3 LINE L1 2123 3417 -2463 7 649 2720 216 86 14 chr5 8487849 8488960 -144048299 + RMER1B Other Other 19 918 -148 7 649 308 193 0 0 chr5 8488958 8489015 -144048244 + RMER1B Other Other 862 918 -148 7 649 264 200 0 0 chr5 8489015 8489065 -144048194 + RMER1B Other Other 864 913 -153 7 649 293 211 0 0 chr5 8489068 8489125 -144048134 + RMER1B Other Other 862 918 -148 7 649 274 218 0 0 chr5 8489125 8489180 -144048079 + RMER1B Other Other 864 918 -148 7 649 262 246 46 0 chr5 8489178 8489243 -144048016 + RMER1B Other Other 862 929 -137 7 649 470 274 7 0 chr5 8489306 8489459 -144047800 + L1M3 LINE L1 3602 3755 -2385 7 649 21 0 0 0 chr5 8489591 8489612 -144047647 + AT_rich Low_complexity Low_complexity 1 21 0 7 649 535 246 0 8 chr5 8492854 8492977 -144044282 - B1_Mus2 SINE Alu -20 127 6 7 649 22 56 0 0 chr5 8493581 8493617 -144043642 + AT_rich Low_complexity Low_complexity 1 36 0 7 649 275 348 52 7 chr5 8493645 8493781 -144043478 + Lx8 LINE L1 6814 6955 -518 7 649 295 304 54 11 chr5 8494235 8494328 -144042931 + PB1D10 SINE Alu 12 108 -9 7 649 2551 128 38 5 chr5 8494379 8494779 -144042480 - MTC LTR MaLR -8 413 1 7 649 28 86 0 0 chr5 8495356 8495426 -144041833 + AT_rich Low_complexity Low_complexity 1 70 0 7 649 648 208 53 8 chr5 8495877 8496008 -144041251 + B1_Mur1 SINE Alu 2 138 -11 7 649 26 50 0 0 chr5 8496117 8496157 -144041102 + AT_rich Low_complexity Low_complexity 1 40 0 7 649 552 315 71 43 chr5 8496889 8497171 -144040088 - B4A SINE B4 0 292 3 7 649 22 0 0 0 chr5 8497307 8497329 -144039930 + AT_rich Low_complexity Low_complexity 1 22 0 7 649 6280 117 42 19 chr5 8498034 8500000 -144037259 + L1Md_F LINE L1 177 2189 -3694 7 649 24486 98 2 6 chr5 8500000 8503694 -144033565 + L1_Mm LINE L1 2190 5868 -15 1 649 676 178 6 62 chr5 8503696 8503713 -144033546 + ID_B1 SINE B4 72 222 0 2 649 1124 56 0 0 chr5 8503713 8503856 -144033403 + B1_Mus1 SINE Alu 6 148 0 3 649 5355 72 7 11 chr5 8503872 8504578 -144032681 + L1_Mus1 LINE L1 5862 6564 -3 4 649 264 122 0 0 chr5 8504591 8504632 -144032627 + (A)n Simple_repeat Simple_repeat 1 41 0 5 649 2014 278 46 55 chr5 8505065 8506310 -144030949 + Lx6 LINE L1 5974 7434 -26 6 649 722 136 17 0 chr5 8506437 8506555 -144030704 + B3 SINE B2 1 120 -96 7 649 31 26 0 0 chr5 8506584 8506622 -144030637 + AT_rich Low_complexity Low_complexity 1 38 0 8 649 267 194 119 126 chr5 8506847 8507006 -144030253 + B3A SINE B2 41 198 0 9 649 284 261 225 11 chr5 8507145 8507234 -144030025 + RSINE1 SINE B4 1 108 -57 1 649 2255 148 18 35 chr5 8507444 8507844 -144029415 + ORR1B1 LTR MaLR 1 393 -1 1 649 352 189 0 0 chr5 8507934 8507987 -144029272 - PB1D9 SINE Alu -67 53 1 1 649 33 43 0 0 chr5 8508201 8508248 -144029011 + AT_rich Low_complexity Low_complexity 1 47 0 1 649 500 254 182 62 chr5 8508266 8508573 -144028686 + MER57D LTR ERV1 49 392 -19 1 649 4669 52 8 33 chr5 8508602 8509234 -144028025 - Lx3_Mus LINE L1 -8 7001 6386 1 649 351 0 0 0 chr5 8510096 8510135 -144027124 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 649 838 299 19 15 chr5 8510371 8510636 -144026623 - B4 SINE B4 -21 271 6 1 649 198 103 0 0 chr5 8510677 8510706 -144026553 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 649 656 326 53 0 chr5 8510749 8510936 -144026323 - B4A SINE B4 -94 198 2 1 649 33 43 0 0 chr5 8510978 8511025 -144026234 + AT_rich Low_complexity Low_complexity 1 47 0 2 649 240 353 7 22 chr5 8511539 8511675 -144025584 + GA-rich Low_complexity Low_complexity 5 138 0 2 649 41 65 0 11 chr5 8512843 8512909 -144024350 + AT_rich Low_complexity Low_complexity 1 66 0 2 649 1173 68 0 0 chr5 8512909 8513056 -144024203 - B1_Mus2 SINE Alu 0 147 1 2 649 41 65 0 11 chr5 8513056 8513083 -144024176 + AT_rich Low_complexity Low_complexity 1 27 0 2 649 309 281 198 25 chr5 8513144 8513301 -144023958 - B3A SINE B2 -13 185 2 2 649 610 109 16 0 chr5 8514405 8514533 -144022726 + (TTTC)n Simple_repeat Simple_repeat 4 133 0 2 649 644 218 7 101 chr5 8514535 8514683 -144022576 - B1_Mur4 SINE Alu -13 137 4 2 649 512 279 74 0 chr5 8514805 8514927 -144022332 - RSINE1 SINE B4 -33 132 2 2 649 990 272 111 3 chr5 8515439 8515763 -144021496 - Lx6 LINE L1 -81 7379 7021 2 649 572 250 193 8 chr5 8515911 8516165 -144021094 + Lx9 LINE L1 7052 7352 -292 3 649 1657 264 51 73 chr5 8516211 8516816 -144020443 + Lx6 LINE L1 6794 7385 -75 3 649 987 231 5 49 chr5 8517618 8517841 -144019418 - B3 SINE B2 0 216 4 3 649 22 0 0 0 chr5 8517871 8517893 -144019366 + AT_rich Low_complexity Low_complexity 1 22 0 3 649 27 62 0 0 chr5 8518036 8518084 -144019175 + AT_rich Low_complexity Low_complexity 1 48 0 3 649 296 320 19 28 chr5 8518111 8518217 -144019042 - PB1D10 SINE Alu -1 116 12 3 649 613 203 13 92 chr5 8518554 8518706 -144018553 + B1_Mur2 SINE Alu 2 141 -8 3 649 218 231 12 49 chr5 8518709 8518791 -144018468 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 3 649 1321 154 44 8 chr5 8518816 8519065 -144018194 - RMER16-int LTR ERVK -3583 1823 1566 3 649 368 218 11 33 chr5 8519163 8519253 -144018006 - RLTR45-int LTR ERVK -3660 3584 3497 3 649 309 182 0 33 chr5 8519306 8519397 -144017862 - L1Md_T LINE L1 -5 6577 6490 4 81 309 311 51 68 chr5 8519594 8519728 -144017531 + L1MC4 LINE L1 7495 7628 -414 4 650 338 120 120 0 chr5 8519728 8519803 -144017456 + Lx LINE L1 6562 6645 -9 4 650 309 311 51 68 chr5 8519803 8519844 -144017415 + L1MC4 LINE L1 7629 7666 -376 4 650 23 68 0 0 chr5 8520594 8520638 -144016621 + AT_rich Low_complexity Low_complexity 1 44 0 4 650 214 225 120 53 chr5 8521222 8521297 -144015962 - PB1D10 SINE Alu -12 105 26 4 650 375 78 0 0 chr5 8522267 8522318 -144014941 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 4 650 974 221 10 10 chr5 8522322 8522514 -144014745 - B3 SINE B2 -24 192 1 4 650 279 0 0 0 chr5 8522666 8522697 -144014562 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 4 650 4160 45 8 0 chr5 8522948 8523457 -144013802 - L1_Mus1 LINE L1 0 6567 6055 4 650 738 171 32 0 chr5 8524137 8524260 -144012999 - B1_Mus2 SINE Alu -20 127 1 4 650 387 284 94 8 chr5 8524157 8524274 -144012985 - B4 SINE B4 -94 198 72 5 650 271 227 109 96 chr5 8524274 8524308 -144012951 - MT2B2 LTR ERVL -320 259 107 5 650 2666 200 53 12 chr5 8524401 8524982 -144012277 + Lx5 LINE L1 6446 7050 0 5 650 33 25 0 0 chr5 8525375 8525415 -144011844 + AT_rich Low_complexity Low_complexity 1 40 0 5 650 405 254 70 20 chr5 8525593 8525794 -144011465 - L1ME3B LINE L1 -385 5855 5645 5 650 436 267 73 15 chr5 8526879 8527016 -144010243 + RSINE1 SINE B4 4 148 -17 5 650 307 259 12 61 chr5 8527979 8528078 -144009181 - ID4 SINE ID -57 95 2 5 650 229 270 100 146 chr5 8528082 8528128 -144009131 - PB1 SINE Alu -1 126 75 5 650 186 71 0 0 chr5 8528128 8528156 -144009103 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 650 229 270 100 146 chr5 8528156 8528168 -144009091 - PB1 SINE Alu -53 74 72 5 650 1194 61 14 0 chr5 8528168 8528316 -144008943 - B1_Mur4 SINE Alu 0 150 1 5 650 229 270 100 146 chr5 8528316 8528386 -144008873 - PB1 SINE Alu -56 71 3 5 650 236 289 12 35 chr5 8529032 8529118 -144008141 + L2a LINE L2 3330 3413 -13 6 650 481 220 2 33 chr5 8529371 8529492 -144007767 + Lx5 LINE L1 6272 6371 -679 6 650 369 336 57 28 chr5 8529520 8529661 -144007598 + RSINE1 SINE B4 4 148 -17 6 650 234 0 0 0 chr5 8529713 8529739 -144007520 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 6 650 37687 21 8 8 chr5 8530054 8536206 -144001053 - L1Md_T LINE L1 0 6582 434 6 650 235 115 58 0 chr5 8536394 8536446 -144000813 + Lx9 LINE L1 7573 7627 -17 6 650 751 212 57 26 chr5 8536647 8536841 -144000418 + B3 SINE B2 5 204 -12 6 650 26 82 0 0 chr5 8536924 8536985 -144000274 + AT_rich Low_complexity Low_complexity 1 61 0 6 650 195 355 37 62 chr5 8537184 8537265 -143999994 - MIRm SINE MIR -24 252 174 6 650 284 56 0 0 chr5 8537287 8537323 -143999936 - Lx2B LINE L1 -1086 5914 5879 6 650 1701 109 14 21 chr5 8537323 8537530 -143999729 + Lx LINE L1 6371 6577 -77 7 650 321 26 0 0 chr5 8537530 8537568 -143999691 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 650 1701 109 14 21 chr5 8537568 8537640 -143999619 + Lx LINE L1 6578 6648 -6 7 650 277 333 106 17 chr5 8538408 8538588 -143998671 - L2 LINE L2 -529 2890 2695 7 650 397 301 71 29 chr5 8539246 8539386 -143997873 + MER21B LTR ERV1 689 834 -29 7 650 184 328 88 37 chr5 8539445 8539581 -143997678 - L2 LINE L2 -1693 1726 1584 7 650 538 265 71 19 chr5 8539733 8539887 -143997372 + RSINE1 SINE B4 4 165 0 7 650 382 273 70 8 chr5 8539966 8540095 -143997164 + B1F SINE Alu 1 137 -12 7 650 327 203 0 0 chr5 8540099 8540173 -143997086 + CT-rich Low_complexity Low_complexity 1 74 0 7 650 1085 123 6 0 chr5 8540177 8540356 -143996903 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 650 491 262 246 11 chr5 8540996 8541264 -143995995 + RLTR12B LTR ERVK 11 335 -193 7 650 290 330 10 21 chr5 8542166 8542262 -143994997 - PB1D10 SINE Alu -20 97 3 7 650 1558 276 133 37 chr5 8543053 8543803 -143993456 + Lx8 LINE L1 6652 7473 0 8 650 668 302 74 15 chr5 8543841 8544231 -143993028 + L1MA4 LINE L1 5476 5888 -412 8 650 23 0 0 0 chr5 8544852 8544875 -143992384 + GC_rich Low_complexity Low_complexity 1 23 0 8 650 229 202 44 67 chr5 8544875 8544965 -143992294 + B1_Mus2 SINE Alu 44 131 -16 8 650 1134 56 14 0 chr5 8545082 8545226 -143992033 - B1_Mm SINE Alu 0 147 2 8 650 2558 105 35 2 chr5 8545316 8545746 -143991513 + L1VL2 LINE L1 179 622 -5713 8 650 222 37 0 0 chr5 8546692 8546719 -143990540 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 8 650 342 0 0 0 chr5 8546792 8546830 -143990429 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 650 1235 48 0 0 chr5 8546854 8547001 -143990258 + B1_Mus2 SINE Alu 1 147 0 8 650 224 30 30 0 chr5 8547004 8547037 -143990222 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 8 650 768 176 14 21 chr5 8547047 8547192 -143990067 + B1_Mur2 SINE Alu 1 144 -5 9 650 237 98 0 0 chr5 8547198 8547239 -143990020 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 9 650 922 307 33 11 chr5 8547834 8548107 -143989152 - B4A SINE B4 0 292 14 9 650 1698 174 24 114 chr5 8548530 8548952 -143988307 - ORR1C2 LTR MaLR 0 384 1 9 650 1047 108 0 0 chr5 8549840 8550061 -143987198 + (CA)n Simple_repeat Simple_repeat 1 221 0 9 650 1150 265 49 35 chr5 8550061 8550405 -143986854 + ORR1E LTR MaLR 2 350 -9 9 650 3677 275 117 30 chr5 8550417 8551606 -143985653 + ORR1E-int LTR MaLR 4 1295 -285 9 650 7407 2 0 0 chr5 8551606 8552468 -143984791 + L1Md_Gf LINE L1 281 1142 -5380 9 650 12708 22 0 0 chr5 8555333 8556818 -143980441 + L1Md_T LINE L1 4102 5586 -297 9 650 8968 6 0 0 chr5 8556818 8557814 -143979445 + L1Md_T LINE L1 5587 6582 0 9 650 1043 223 79 24 chr5 8557860 8558113 -143979146 + ORR1E-int LTR MaLR 1280 1546 -34 9 650 537 347 0 0 chr5 8558216 8558363 -143978896 + RSINE1 SINE B4 6 152 -13 9 650 1050 85 18 6 chr5 8558537 8558703 -143978556 - L1Md_F2 LINE L1 0 6582 6415 9 650 330 266 0 12 chr5 8560464 8560544 -143976715 + Lx7 LINE L1 6647 6725 -971 1 650 1116 275 22 18 chr5 8561009 8561283 -143975976 - Lx7 LINE L1 -1052 6644 6370 1 650 25 65 0 0 chr5 8561628 8561674 -143975585 + AT_rich Low_complexity Low_complexity 1 46 0 1 650 1043 223 0 0 chr5 8561773 8561975 -143975284 - B3 SINE B2 -12 204 3 1 650 618 82 0 0 chr5 8563461 8563546 -143973713 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 1 650 185 262 144 36 chr5 8563549 8563660 -143973599 - L2a LINE L2 -82 3344 3222 1 650 556 270 34 70 chr5 8564257 8564653 -143972606 - Lx5 LINE L1 -438 5746 5385 1 650 833 272 148 44 chr5 8564653 8564992 -143972267 - MTEa LTR MaLR -3 376 3 1 650 502 231 112 46 chr5 8565048 8565102 -143972157 - Lx5 LINE L1 -846 5300 5256 1 650 1574 42 5 0 chr5 8565102 8565292 -143971967 - B2_Mm1t SINE B2 -2 191 1 1 650 502 231 112 46 chr5 8565292 8565496 -143971763 - Lx5 LINE L1 -891 5255 5025 1 650 593 331 137 9 chr5 8565668 8566018 -143971241 + MER47B DNA MER2_type 24 418 0 1 650 331 252 86 8 chr5 8566024 8566152 -143971107 - Tigger7 DNA MER2_type -83 2408 2271 1 650 29 70 0 0 chr5 8567811 8567868 -143969391 + AT_rich Low_complexity Low_complexity 1 57 0 1 650 1134 82 0 0 chr5 8568212 8568358 -143968901 + B1_Mus2 SINE Alu 2 147 0 1 650 246 253 38 12 chr5 8570091 8570171 -143967088 + ID4 SINE ID 1 82 -1 1 650 653 282 0 138 chr5 8570470 8570698 -143966561 - B4A SINE B4 -10 282 97 1 650 1185 14 7 27 chr5 8570698 8570709 -143966550 - B1_Mus1 SINE Alu -2 146 139 1 650 230 0 33 0 chr5 8570709 8570739 -143966520 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 650 1185 14 7 27 chr5 8570739 8570875 -143966384 - B1_Mus1 SINE Alu -10 138 2 1 650 653 282 0 138 chr5 8570875 8570971 -143966288 - B4A SINE B4 -196 96 3 1 650 264 233 115 73 chr5 8572265 8572427 -143964832 - L1M5 LINE L1 -2647 3499 3329 1 650 1007 158 168 0 chr5 8572427 8572617 -143964642 - URR1A DNA MER1_type 0 226 5 1 650 264 233 115 73 chr5 8572617 8572672 -143964587 - L1M5 LINE L1 -2818 3328 3273 1 650 337 315 129 11 chr5 8572919 8573182 -143964077 - L1M5 LINE L1 -3175 2971 2678 1 650 442 264 19 0 chr5 8573334 8573440 -143963819 - PB1D10 SINE Alu -9 108 1 1 650 343 342 171 49 chr5 8574947 8575316 -143961943 - MLT1E2 LTR MaLR 0 627 214 1 650 1229 196 33 39 chr5 8575788 8576118 -143961141 + Lx7 LINE L1 7369 7696 0 1 650 268 211 54 40 chr5 8576558 8576632 -143960627 - Charlie1a DNA MER1_type -35 1420 1346 1 650 334 283 171 101 chr5 8576666 8576894 -143960365 + B4A SINE B4 13 256 -36 1 650 345 117 0 0 chr5 8576939 8576999 -143960260 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 650 1123 263 124 35 chr5 8577000 8577434 -143959825 - Charlie1a DNA MER1_type -463 992 520 1 650 342 0 0 0 chr5 8577440 8577478 -143959781 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 650 401 306 0 0 chr5 8577491 8577589 -143959670 - B4 SINE B4 -4 288 191 1 650 347 300 38 0 chr5 8577623 8577703 -143959556 - B4A SINE B4 -182 110 28 1 650 209 159 0 22 chr5 8577747 8577792 -143959467 + CT-rich Low_complexity Low_complexity 2 45 0 1 650 342 314 34 0 chr5 8577817 8577935 -143959324 - Charlie1a DNA MER1_type -957 498 377 1 650 493 239 68 0 chr5 8577945 8578062 -143959197 - B1F SINE Alu -22 127 3 1 650 262 241 69 108 chr5 8578062 8578093 -143959166 - MT2B LTR ERVL -437 164 139 1 650 2019 63 4 25 chr5 8578162 8578439 -143958820 + L1_Mus1 LINE L1 6297 6567 0 1 650 526 288 186 20 chr5 8578469 8578717 -143958542 - Charlie1a DNA MER1_type -1166 289 1 1 650 300 197 15 0 chr5 8578717 8578746 -143958513 - B1_Mus2 SINE Alu -71 76 47 1 650 402 202 0 29 chr5 8579699 8579801 -143957458 - Lx9 LINE L1 0 7644 7546 1 650 6162 226 133 20 chr5 8580936 8583396 -143953863 - Lx7 LINE L1 -612 7084 4302 1 650 231 36 0 0 chr5 8583396 8583424 -143953835 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 650 6162 200 203 24 chr5 8583424 8583954 -143953305 - Lx7 LINE L1 -1579 4301 3706 1 650 393 198 0 0 chr5 8583947 8584033 -143953226 - Lx7 LINE L1 -4206 1674 1589 1 650 627 122 20 0 chr5 8584048 8584146 -143953113 - B1_Mur3 SINE Alu -4 145 46 1 650 1223 185 63 0 chr5 8584158 8584428 -143952831 - Lx7 LINE L1 -4278 1602 1316 1 650 569 273 79 6 chr5 8584457 8584634 -143952625 - Lx7 LINE L1 -6556 1172 983 1 650 235 311 78 13 chr5 8584902 8585055 -143952204 - Lx7 LINE L1 -6893 835 673 1 650 364 286 31 15 chr5 8585209 8585333 -143951926 + B1F SINE Alu 1 149 0 1 650 253 34 16 79 chr5 8585347 8585410 -143951849 + (CAAA)n Simple_repeat Simple_repeat 1 59 0 1 650 597 246 48 0 chr5 8585421 8585547 -143951712 + B1_Mur1 SINE Alu 17 148 -1 1 650 948 67 0 0 chr5 8585547 8585667 -143951592 - L1_Mus2 LINE L1 -277 6289 6170 1 650 1801 118 29 14 chr5 8585672 8585948 -143951311 + L1_Mus2 LINE L1 6286 6565 -1 1 650 1408 108 25 17 chr5 8585960 8586196 -143951063 + L1_Mus3 LINE L1 6396 6633 -5 1 650 189 0 0 0 chr5 8586243 8586264 -143950995 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 650 423 0 0 0 chr5 8586264 8586310 -143950949 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 650 31 58 0 0 chr5 8586415 8586467 -143950792 + AT_rich Low_complexity Low_complexity 1 52 0 1 650 9526 94 10 11 chr5 8587074 8589127 -143948132 - L1_Mus2 LINE L1 -45 6521 4482 1 650 659 287 102 41 chr5 8589215 8589696 -143947563 + L1MB7 LINE L1 5646 6155 -23 1 650 213 351 103 42 chr5 8590950 8591212 -143946047 - L2a LINE L2 -165 3261 2984 1 650 514 320 123 11 chr5 8592291 8592746 -143944513 - L1ME1 LINE L1 -184 5995 5490 1 650 1268 282 33 17 chr5 8592901 8593323 -143943936 - L1MA8 LINE L1 -373 5918 5490 1 650 21 57 0 0 chr5 8593478 8593513 -143943746 + AT_rich Low_complexity Low_complexity 1 35 0 1 650 458 274 89 0 chr5 8593543 8593678 -143943581 - RSINE1 SINE B4 -17 148 2 1 650 274 204 0 0 chr5 8593686 8593735 -143943524 + L3 LINE CR1 4286 4334 -155 1 650 743 179 7 15 chr5 8593807 8593943 -143943316 + B1_Mur3 SINE Alu 2 136 -13 1 650 303 136 0 0 chr5 8593964 8594023 -143943236 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 1 650 235 156 31 15 chr5 8594020 8594085 -143943174 + A-rich Low_complexity Low_complexity 5 70 0 1 650 392 305 9 19 chr5 8594279 8594386 -143942873 - PB1D10 SINE Alu -11 106 1 1 650 282 322 0 0 chr5 8595101 8595191 -143942068 - ID4_ SINE ID -57 95 6 1 650 864 169 17 46 chr5 8595651 8595825 -143941434 - B2_Mm2 SINE B2 0 195 27 1 650 7723 48 1 7 chr5 8595827 8597101 -143940158 - L1Md_F2 LINE L1 -12 6570 5309 1 650 180 0 0 0 chr5 8597101 8597121 -143940138 + (T)n Simple_repeat Simple_repeat 1 20 0 1 650 577 168 34 218 chr5 8597385 8597480 -143939779 - B3A SINE B2 -14 184 118 1 650 588 73 0 0 chr5 8597480 8597562 -143939697 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 650 577 168 34 218 chr5 8597562 8597672 -143939587 - B3A SINE B2 -81 117 17 1 650 239 227 0 0 chr5 8597844 8597888 -143939371 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 650 238 106 43 0 chr5 8597906 8597953 -143939306 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 650 892 118 13 7 chr5 8598645 8598799 -143938460 + (TTCC)n Simple_repeat Simple_repeat 2 156 0 1 650 237 313 224 17 chr5 8599041 8599220 -143938039 - B3 SINE B2 0 216 1 1 650 1554 35 5 5 chr5 8599348 8599549 -143937710 - L1Md_F2 LINE L1 0 6582 6382 1 650 8290 36 1 2 chr5 8599549 8600922 -143936337 - L1Md_F2 LINE L1 -3 6579 5209 1 650 254 186 0 0 chr5 8600922 8600965 -143936294 - B2_Mm2 SINE B2 -148 47 5 1 650 863 190 0 7 chr5 8601453 8601596 -143935663 - B1_Mur1 SINE Alu -7 142 1 1 650 269 351 51 51 chr5 8601696 8601891 -143935368 - Lx8 LINE L1 -34 7439 7245 1 650 230 220 125 17 chr5 8602160 8602280 -143934979 + Lx5 LINE L1 6906 7038 -12 1 650 1470 133 11 61 chr5 8602576 8602855 -143934404 - Lx3C LINE L1 -2 6974 6710 1 650 5776 103 32 18 chr5 8602855 8603812 -143933447 + L1_Mur1 LINE L1 3190 4160 -1726 1 650 1297 282 58 8 chr5 8604370 8604832 -143932427 - Lx8 LINE L1 -611 6862 6340 1 650 405 216 73 8 chr5 8604898 8605023 -143932236 + Lx7 LINE L1 5735 5903 -1793 1 650 252 259 0 0 chr5 8605070 8605128 -143932131 + B3 SINE B2 158 215 -1 1 650 194 81 0 26 chr5 8605184 8605222 -143932037 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 650 759 258 68 78 chr5 8605732 8606026 -143931233 + B4A SINE B4 1 291 -1 1 650 666 256 74 15 chr5 8606337 8606539 -143930720 - B3 SINE B2 0 216 3 1 650 234 0 0 0 chr5 8606539 8606565 -143930694 + (T)n Simple_repeat Simple_repeat 1 26 0 1 650 34703 76 16 11 chr5 8606619 8612835 -143924424 - L1Md_F2 LINE L1 0 6582 359 1 650 1035 216 37 0 chr5 8612840 8613081 -143924178 - ORR1B1-int LTR MaLR -886 623 374 1 650 2974 40 19 0 chr5 8613081 8613457 -143923802 - L1Md_F2 LINE L1 -387 6195 5813 1 650 537 103 13 0 chr5 8613457 8613535 -143923724 + ORR1A3 LTR MaLR 248 326 0 1 650 844 91 49 8 chr5 8614485 8614607 -143922652 + B1_Mur4 SINE Alu 24 150 0 1 650 307 269 148 8 chr5 8614609 8614845 -143922414 + L1M5 LINE L1 2574 2842 -3304 1 650 2415 40 3 3 chr5 8614883 8615181 -143922078 - L1_Mus2 LINE L1 0 6566 6269 1 650 353 225 23 70 chr5 8615356 8615442 -143921817 + PB1D10 SINE Alu 29 110 -7 1 650 368 259 180 24 chr5 8615623 8616039 -143921220 + L1M5 LINE L1 3503 3983 -2163 1 650 647 307 93 50 chr5 8616091 8616574 -143920685 + L1M5 LINE L1 4106 4609 -1537 1 650 333 312 92 23 chr5 8616578 8616752 -143920507 + Lx8 LINE L1 7192 7377 -96 1 650 342 355 67 9 chr5 8616952 8617293 -143919966 + L1M5 LINE L1 4703 5063 -1083 1 650 926 267 80 15 chr5 8617489 8617567 -143919692 + B4 SINE B4 1 85 -207 1 650 225 0 0 0 chr5 8617567 8617592 -143919667 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 650 926 267 80 15 chr5 8617592 8617787 -143919472 + B4 SINE B4 86 291 -1 1 650 211 54 54 0 chr5 8617794 8617831 -143919428 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 1 650 1602 155 30 50 chr5 8619238 8619537 -143917722 - MTC LTR MaLR -8 413 121 1 650 798 85 8 0 chr5 8619537 8619655 -143917604 + L1_Mus2 LINE L1 6447 6565 -1 1 650 30 27 0 0 chr5 8619658 8619695 -143917564 + AT_rich Low_complexity Low_complexity 1 37 0 1 650 201 121 0 0 chr5 8619706 8619739 -143917520 + (A)n Simple_repeat Simple_repeat 1 33 0 1 650 566 153 0 67 chr5 8619768 8619873 -143917386 - MTC LTR MaLR -321 100 3 1 650 26 93 0 0 chr5 8619904 8619979 -143917280 + AT_rich Low_complexity Low_complexity 1 75 0 1 650 1088 192 24 19 chr5 8620037 8620249 -143917010 + B3 SINE B2 2 214 -2 1 650 249 264 113 43 chr5 8620339 8620454 -143916805 + MT2B LTR ERVL 156 278 -323 1 650 545 236 9 0 chr5 8620368 8620474 -143916785 + B1F2 SINE Alu 37 143 -6 1 650 23 33 0 0 chr5 8621426 8621456 -143915803 + AT_rich Low_complexity Low_complexity 1 30 0 1 650 234 0 0 0 chr5 8622549 8622575 -143914684 + (CCG)n Simple_repeat Simple_repeat 3 28 0 1 650 207 203 0 0 chr5 8622799 8622858 -143914401 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 650 26 0 0 0 chr5 8622878 8622904 -143914355 + GC_rich Low_complexity Low_complexity 1 26 0 2 650 204 67 0 0 chr5 8622918 8622948 -143914311 + (CGGG)n Simple_repeat Simple_repeat 4 33 0 2 650 207 0 0 0 chr5 8623858 8623881 -143913378 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 650 31 26 0 0 chr5 8623928 8623966 -143913293 + AT_rich Low_complexity Low_complexity 1 38 0 2 650 7836 64 12 3 chr5 8623972 8625696 -143911563 + L1_Mus1 LINE L1 4829 6567 0 2 650 559 311 164 39 chr5 8625794 8626105 -143911154 - ORR1E LTR MaLR -12 358 9 2 650 350 176 8 157 chr5 8626604 8626667 -143910592 + HAL1-3A_ME LINE L1 1924 1975 -883 2 650 638 316 66 49 chr5 8626667 8626953 -143910306 + B4 SINE B4 1 291 -1 2 650 350 176 8 157 chr5 8626953 8627010 -143910249 + HAL1-3A_ME LINE L1 1976 2026 -832 2 650 1758 169 121 9 chr5 8627291 8627614 -143909645 - ORR1B2 LTR MaLR -8 359 1 2 650 214 253 13 26 chr5 8627861 8627938 -143909321 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 2 650 410 318 25 38 chr5 8628220 8628377 -143908882 - MLT1E3 LTR MaLR -33 591 437 2 650 194 366 109 34 chr5 8628417 8628782 -143908477 - L2b LINE L2 -202 3173 2783 2 650 1179 195 32 32 chr5 8629467 8629716 -143907543 - MTD LTR MaLR -14 405 157 2 650 623 307 16 48 chr5 8629692 8629880 -143907379 + B4A SINE B4 98 279 -13 2 650 291 28 0 0 chr5 8629894 8629930 -143907329 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 650 510 17 0 0 chr5 8629930 8629988 -143907271 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 650 321 345 147 0 chr5 8630414 8630611 -143906648 + L2a LINE L2 2816 3041 -378 2 650 387 155 20 20 chr5 8630722 8630821 -143906438 - Lx9 LINE L1 -8 7636 7538 2 650 2103 204 218 20 chr5 8630846 8631748 -143905511 - Lx9 LINE L1 -203 7441 6361 2 650 291 178 86 32 chr5 8631750 8631843 -143905416 + Lx9 LINE L1 4904 5001 -846 2 650 585 242 92 34 chr5 8631890 8632129 -143905130 + Lx9 LINE L1 5799 6051 -1593 2 650 346 289 152 5 chr5 8632170 8632368 -143904891 + L2a LINE L2 3199 3425 -1 2 650 517 284 64 51 chr5 8632545 8632612 -143904647 + ID SINE ID 9 77 -147 2 650 244 315 98 36 chr5 8632612 8632724 -143904535 + PB1D9 SINE Alu 1 119 -1 2 650 21 0 0 0 chr5 8633990 8634011 -143903248 + AT_rich Low_complexity Low_complexity 1 21 0 2 650 390 57 0 0 chr5 8634478 8634531 -143902728 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 650 21 36 0 0 chr5 8634821 8634849 -143902410 + AT_rich Low_complexity Low_complexity 1 28 0 2 650 1832 153 40 25 chr5 8635005 8635327 -143901932 - ORR1B2 LTR MaLR -9 358 32 2 650 356 153 12 0 chr5 8635442 8635527 -143901732 + CT-rich Low_complexity Low_complexity 1 86 0 2 650 372 340 0 0 chr5 8635910 8636010 -143901249 - PB1D10 SINE Alu -8 109 10 2 650 31021 70 4 5 chr5 8636141 8641298 -143895961 + L1Md_F2 LINE L1 340 5589 -297 2 650 8119 45 1 7 chr5 8641298 8642300 -143894959 + L1Md_F2 LINE L1 5590 6585 0 2 650 248 70 23 0 chr5 8642317 8642360 -143894899 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2 650 1111 284 11 7 chr5 8642626 8642913 -143894346 - B4A SINE B4 -4 288 1 2 650 4051 138 52 20 chr5 8643026 8643757 -143893502 + RMER6A LTR ERVK 1 754 -2 2 650 30 45 0 0 chr5 8644111 8644155 -143893104 + AT_rich Low_complexity Low_complexity 1 44 0 2 650 21308 68 6 3 chr5 8644652 8648325 -143888934 - L1Md_F2 LINE L1 -1 6581 2894 2 650 290 315 48 32 chr5 8648333 8648520 -143888739 + L2a LINE L2 3086 3275 -151 2 650 267 54 0 0 chr5 8649271 8649308 -143887951 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 650 330 45 0 0 chr5 8649308 8649351 -143887908 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 2 650 814 143 0 8 chr5 8649353 8649480 -143887779 - B1_Mus1 SINE Alu -22 126 1 2 650 407 259 13 92 chr5 8649480 8649511 -143887748 - MT2B LTR ERVL -445 156 138 2 650 193 346 18 53 chr5 8650011 8650124 -143887135 - MIR SINE MIR -97 165 57 2 81 446 317 75 0 chr5 8650715 8650835 -143886424 - RSINE1 SINE B4 -34 131 3 2 651 282 321 23 81 chr5 8651233 8651406 -143885853 - MTEb LTR MaLR -13 366 204 2 651 236 262 50 0 chr5 8651528 8651608 -143885651 - MLT1A1 LTR MaLR -268 140 57 2 651 1133 78 0 0 chr5 8651755 8651897 -143885362 + B1_Mus2 SINE Alu 1 142 -5 2 651 221 344 15 15 chr5 8652101 8652202 -143885057 + B1F1 SINE Alu 6 106 -11 2 651 262 338 81 40 chr5 8652236 8652432 -143884827 + MIR SINE MIR 23 224 -44 2 651 36900 5 0 0 chr5 8652989 8658367 -143878892 + L1Md_A LINE L1 205 5583 -300 2 651 9075 2 0 0 chr5 8658370 8659366 -143877893 + L1Md_A LINE L1 5587 6582 0 2 651 23 0 0 0 chr5 8659484 8659507 -143877752 + AT_rich Low_complexity Low_complexity 1 23 0 2 651 805 267 129 20 chr5 8661192 8661494 -143875765 + RMER5 LTR ERV1 33 367 -167 2 651 450 0 0 0 chr5 8663042 8663092 -143874167 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 651 2627 74 34 57 chr5 8663822 8664288 -143872971 + L1_Mus3 LINE L1 6246 6638 0 2 651 417 274 39 24 chr5 8665512 8665639 -143871620 - ID_B1 SINE B4 -3 221 93 2 651 301 267 121 8 chr5 8666135 8666267 -143870992 - MIR SINE MIR 0 262 116 2 651 620 292 104 14 chr5 8666372 8666584 -143870675 - MTD LTR MaLR -188 231 1 2 651 339 266 0 0 chr5 8666823 8666902 -143870357 - U4 snRNA snRNA -66 79 1 2 651 599 312 105 31 chr5 8666903 8667161 -143870098 - MER68 LTR ERVL -82 481 205 2 651 268 262 110 55 chr5 8668109 8668218 -143869041 - PB1D10 SINE Alu -1 116 2 2 651 562 254 220 40 chr5 8669000 8669385 -143867874 - MLT1D LTR MaLR -47 458 7 2 651 237 350 87 29 chr5 8669663 8670000 -143867259 + L2a LINE L2 2999 3395 -31 2 651 1223 254 34 24 chr5 8670731 8671110 -143866149 - Lx9 LINE L1 -157 7487 7105 2 651 316 279 78 48 chr5 8675147 8675313 -143861946 - L2 LINE L2 -809 2610 2440 2 651 908 236 71 46 chr5 8675536 8675838 -143861421 - Tigger7 DNA MER2_type -42 2449 2186 2 651 331 270 0 13 chr5 8676071 8676146 -143861113 + ID4_ SINE ID 3 76 -7 2 651 28 29 0 0 chr5 8676466 8676501 -143860758 + AT_rich Low_complexity Low_complexity 1 35 0 2 651 255 250 20 102 chr5 8676984 8677082 -143860177 - MTEb LTR MaLR -3 376 287 2 651 842 111 0 20 chr5 8677222 8677369 -143859890 + (AGGGGG)n Simple_repeat Simple_repeat 3 146 0 2 651 315 265 87 10 chr5 8677785 8677888 -143859371 + MLT1A0 LTR MaLR 3 113 -252 2 651 290 26 0 25 chr5 8678958 8678998 -143858261 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 651 555 144 108 14 chr5 8679121 8679269 -143857990 - Lx9 LINE L1 -1 7643 7482 2 651 253 293 36 96 chr5 8680722 8680888 -143856371 - MamGypLTR1d LTR Gypsy -612 201 46 2 651 822 261 25 25 chr5 8681150 8681433 -143855826 + Lx8 LINE L1 7090 7372 -101 2 651 577 199 7 14 chr5 8682593 8682710 -143854549 + RLTR33 LTR ERVK 545 635 -43 2 651 589 256 120 45 chr5 8682878 8683078 -143854181 + ID_B1 SINE B4 1 215 -9 2 651 302 282 14 0 chr5 8684485 8684556 -143852703 + ID4 SINE ID 12 83 0 2 651 1643 177 34 62 chr5 8686599 8686984 -143850275 - ORR1D1 LTR MaLR 0 374 1 2 651 193 146 42 0 chr5 8687157 8687205 -143850054 + (CATA)n Simple_repeat Simple_repeat 3 52 0 2 651 318 288 97 29 chr5 8688062 8688341 -143848918 + L1MD2 LINE L1 1515 1812 -5197 2 651 389 258 148 19 chr5 8688441 8688651 -143848608 + L1MD2 LINE L1 1956 2181 -4921 2 651 468 302 119 15 chr5 8688728 8689138 -143848121 + L1MD2 LINE L1 4609 5061 -1945 2 651 1879 136 7 0 chr5 8689208 8689503 -143847756 - Lx2 LINE L1 -2 6995 6699 2 651 738 277 35 39 chr5 8689660 8689695 -143847564 - B3 SINE B2 -11 205 174 2 651 2044 140 48 8 chr5 8689695 8690048 -143847211 - ORR1B2 LTR MaLR 0 367 1 2 651 738 277 35 39 chr5 8690048 8690215 -143847044 - B3 SINE B2 -43 173 4 2 651 329 321 103 19 chr5 8690221 8690542 -143846717 + L1MD2 LINE L1 6448 6795 -424 2 651 630 53 32 0 chr5 8690545 8690640 -143846619 + (TCC)n Simple_repeat Simple_repeat 3 100 0 2 651 2144 170 33 102 chr5 8690641 8691183 -143846076 - Lx2B LINE L1 -13 6987 6483 2 651 761 167 23 0 chr5 8691217 8691349 -143845910 - B1_Mus2 SINE Alu -10 137 3 2 651 568 257 179 38 chr5 8691352 8691720 -143845539 + L1MD2 LINE L1 6782 7201 -18 2 651 24 0 0 0 chr5 8691735 8691759 -143845500 + AT_rich Low_complexity Low_complexity 1 24 0 2 651 1602 233 104 12 chr5 8691992 8692464 -143844795 - Lx6 LINE L1 -4 7456 6950 2 651 185 375 153 0 chr5 8693177 8693321 -143843938 + MIRb SINE MIR 33 198 -70 2 651 192 246 69 17 chr5 8693415 8693473 -143843786 - L3b LINE CR1 -88 394 334 2 651 658 139 34 17 chr5 8693769 8693945 -143843314 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 651 217 347 75 30 chr5 8694816 8695015 -143842244 - L2a LINE L2 -240 3186 2979 2 651 444 320 99 26 chr5 8695325 8695476 -143841783 - RSINE1 SINE B4 -2 163 2 2 651 21 0 0 0 chr5 8696326 8696347 -143840912 + AT_rich Low_complexity Low_complexity 1 21 0 2 651 244 349 35 0 chr5 8696686 8696772 -143840487 + B4A SINE B4 78 166 -126 2 651 405 250 62 0 chr5 8696702 8696798 -143840461 + PB1D10 SINE Alu 9 110 -7 2 651 938 178 55 18 chr5 8697165 8697383 -143839876 + URR1A DNA MER1_type 1 226 0 2 651 185 280 0 39 chr5 8697802 8697854 -143839405 - MIRb SINE MIR -57 211 162 2 651 21 0 0 0 chr5 8697929 8697950 -143839309 + AT_rich Low_complexity Low_complexity 1 21 0 2 651 310 247 77 106 chr5 8697956 8698060 -143839199 + MT2B LTR ERVL 157 257 -344 2 651 806 186 0 0 chr5 8697969 8698098 -143839161 + B1_Mur4 SINE Alu 15 143 -7 2 651 2477 287 119 30 chr5 8699133 8700006 -143837253 - MTE-int LTR MaLR -7 1573 623 2 651 251 273 0 0 chr5 8699976 8700031 -143837228 - MTE2b LTR MaLR -324 55 1 2 651 250 189 0 0 chr5 8701339 8701392 -143835867 - L1MA7 LINE L1 -35 6256 6204 3 651 749 233 80 0 chr5 8703160 8703336 -143833923 - B3A SINE B2 -6 192 3 3 651 198 71 0 0 chr5 8703366 8703394 -143833865 + (TTC)n Simple_repeat Simple_repeat 3 30 0 3 651 26 30 0 0 chr5 8704536 8704569 -143832690 + AT_rich Low_complexity Low_complexity 1 33 0 3 651 36203 33 1 0 chr5 8704727 8712201 -143825058 - L1Md_T LINE L1 0 6585 1 3 651 629 153 8 0 chr5 8712255 8712379 -143824880 + (TG)n Simple_repeat Simple_repeat 2 126 0 3 651 194 390 63 14 chr5 8712572 8712715 -143824544 - MIRb SINE MIR -14 254 105 3 651 210 37 0 0 chr5 8713464 8713491 -143823768 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 651 1172 106 0 6 chr5 8714133 8714313 -143822946 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 3 651 585 105 0 0 chr5 8714313 8714399 -143822860 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 3 651 21 0 0 0 chr5 8715508 8715529 -143821730 + AT_rich Low_complexity Low_complexity 1 21 0 3 651 351 283 131 0 chr5 8715537 8715636 -143821623 + ID_B1 SINE B4 103 214 -10 3 651 477 50 0 0 chr5 8715981 8716041 -143821218 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 651 266 192 0 19 chr5 8716539 8716592 -143820667 - PB1 SINE Alu 0 127 76 3 651 252 311 66 133 chr5 8716610 8716836 -143820423 - ORR1E LTR MaLR -76 308 98 3 651 268 239 29 43 chr5 8716897 8716967 -143820292 - ORR1E LTR MaLR -290 69 1 3 651 233 273 0 154 chr5 8717335 8717478 -143819781 - MER58C DNA MER1_type 0 215 95 3 651 1023 234 58 0 chr5 8718199 8718417 -143818842 + B4 SINE B4 1 231 -61 3 651 997 199 38 24 chr5 8718417 8718628 -143818631 + B3 SINE B2 2 215 -1 3 651 289 275 50 0 chr5 8720870 8720950 -143816309 - ID_B1 SINE B4 -7 217 134 3 651 220 295 116 0 chr5 8721201 8721296 -143815963 - L2c LINE L2 -58 3329 3224 3 651 3375 78 0 7 chr5 8721396 8721850 -143815409 - L1_Mus4 LINE L1 -10 6626 6176 3 651 537 288 0 36 chr5 8721935 8722072 -143815187 + RSINE1 SINE B4 34 165 0 3 651 1727 207 63 6 chr5 8723361 8723711 -143813548 - ORR1D2 LTR MaLR 0 370 1 3 651 329 327 122 16 chr5 8724911 8725166 -143812093 - L2c LINE L2 -681 2738 2457 3 651 183 214 18 0 chr5 8725347 8725403 -143811856 - L2c LINE L2 -1446 1973 1917 3 651 183 42 0 0 chr5 8727070 8727094 -143810165 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 651 606 327 139 27 chr5 8727124 8727382 -143809877 - B4 SINE B4 -3 289 3 3 651 226 26 25 50 chr5 8727391 8727431 -143809828 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 651 697 168 0 0 chr5 8727442 8727561 -143809698 - B1_Mus1 SINE Alu -29 119 1 3 651 398 209 0 122 chr5 8727561 8727589 -143809670 - MT2B LTR ERVL -447 154 143 3 651 213 235 20 0 chr5 8727706 8727757 -143809502 + CT-rich Low_complexity Low_complexity 1 52 0 3 651 1837 172 145 13 chr5 8727761 8728133 -143809126 - MTC LTR MaLR 0 421 1 3 651 317 24 24 0 chr5 8728165 8728207 -143809052 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 3 651 198 0 0 0 chr5 8728470 8728492 -143808767 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 3 651 201 319 104 21 chr5 8728540 8728684 -143808575 - MIR SINE MIR -74 188 33 3 651 481 311 68 46 chr5 8729483 8729746 -143807513 - B4A SINE B4 -19 273 5 3 651 265 151 0 70 chr5 8730596 8730653 -143806606 + B1_Mus1 SINE Alu 8 60 -88 3 651 605 200 13 3 chr5 8730672 8730984 -143806275 + GA-rich Low_complexity Low_complexity 1 315 0 3 651 643 113 0 36 chr5 8731023 8731133 -143806126 + B1_Mus2 SINE Alu 42 147 0 3 651 216 0 0 0 chr5 8731136 8731160 -143806099 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 651 258 306 81 34 chr5 8731160 8731309 -143805950 + L1M5 LINE L1 5582 5737 -387 3 651 3234 41 8 8 chr5 8731603 8731999 -143805260 - MTA_Mm LTR MaLR 0 396 1 3 651 21 0 0 0 chr5 8732109 8732130 -143805129 + AT_rich Low_complexity Low_complexity 1 21 0 3 651 186 223 124 31 chr5 8733363 8733460 -143803799 - MIRb SINE MIR -80 188 83 3 651 1509 205 2 160 chr5 8733912 8734122 -143803137 - RMER10B LTR ERVL -2 396 203 3 651 255 114 0 0 chr5 8734122 8734166 -143803093 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 651 1509 205 2 160 chr5 8734166 8734425 -143802834 - RMER10B LTR ERVL -196 202 1 3 651 961 226 101 84 chr5 8734522 8734988 -143802271 - RMER17C-int LTR ERVK -248 2990 2614 3 651 1930 207 45 61 chr5 8735297 8735791 -143801468 - RLTR19-int LTR ERVK -3110 3027 2542 3 651 303 104 0 0 chr5 8735978 8736026 -143801233 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 651 231 61 0 0 chr5 8736026 8736058 -143801201 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 3 651 264 224 39 13 chr5 8737093 8737170 -143800089 - MLT1H LTR MaLR -16 575 497 3 651 286 305 66 46 chr5 8737278 8737474 -143799785 - MLT1H LTR MaLR -347 202 3 3 651 423 0 0 0 chr5 8737876 8737923 -143799336 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 651 3824 33 2 11 chr5 8738185 8738649 -143798610 - L1Md_F2 LINE L1 0 6582 6123 3 651 22 0 0 0 chr5 8739743 8739765 -143797494 + AT_rich Low_complexity Low_complexity 1 22 0 3 651 36 40 0 0 chr5 8740044 8740094 -143797165 + AT_rich Low_complexity Low_complexity 1 50 0 3 651 649 223 8 8 chr5 8740119 8740250 -143797009 + B1F SINE Alu 10 140 -9 3 651 285 306 0 12 chr5 8741597 8741683 -143795576 + MER5A DNA MER1_type 42 126 -63 3 651 19133 17 0 0 chr5 8741855 8744695 -143792564 - L1Md_A LINE L1 0 6582 3742 3 651 726 285 27 18 chr5 8745055 8745280 -143791979 + B4A SINE B4 2 228 -64 3 651 229 353 47 0 chr5 8745945 8746072 -143791187 + B1F SINE Alu 1 143 -6 3 651 389 167 13 0 chr5 8746275 8746353 -143790906 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 651 744 286 40 67 chr5 8748040 8748340 -143788919 + B4A SINE B4 1 292 0 3 651 23 33 0 0 chr5 8748491 8748521 -143788738 + AT_rich Low_complexity Low_complexity 1 30 0 3 651 19973 79 37 9 chr5 8748626 8749629 -143787630 + MERVK26-int LTR ERVK 3353 4400 -2519 3 651 423 0 0 0 chr5 8749629 8749676 -143787583 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 651 19973 79 37 9 chr5 8749676 8751370 -143785889 + MERVK26-int LTR ERVK 4401 6125 -794 3 651 417 241 0 0 chr5 8751370 8751453 -143785806 + RLTR26 LTR ERVK 560 642 0 3 651 1433 293 84 17 chr5 8751469 8751550 -143785709 + L1M2 LINE L1 4317 4408 -1735 3 651 219 69 0 0 chr5 8751550 8751579 -143785680 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 3 651 1433 293 84 17 chr5 8751579 8752161 -143785098 + L1M2 LINE L1 4409 5024 -1119 3 651 1192 62 0 0 chr5 8752162 8752308 -143784951 + B1_Mm SINE Alu 1 146 -1 3 651 189 0 0 0 chr5 8752331 8752352 -143784907 + (CAA)n Simple_repeat Simple_repeat 2 22 0 3 651 322 238 130 20 chr5 8752520 8752666 -143784593 + L1M2 LINE L1 5237 5398 -745 3 651 1717 273 49 41 chr5 8752669 8753216 -143784043 + L1M2 LINE L1 4640 5189 -954 3 651 4203 32 0 0 chr5 8753216 8753689 -143783570 - MT2C_Mm LTR ERVL -2 473 1 3 651 1717 273 49 41 chr5 8753689 8753852 -143783407 + L1M2 LINE L1 5190 5356 -787 3 651 822 261 12 56 chr5 8753990 8754242 -143783017 + Lx9 LINE L1 7031 7271 -373 3 651 3111 102 40 76 chr5 8754244 8754852 -143782407 - RLTR6_Mm LTR ERV1 -68 586 1 3 651 198 0 0 0 chr5 8754885 8754907 -143782352 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3 651 1937 65 6 58 chr5 8754979 8755133 -143782126 - MusHAL1 LINE L1 -626 2086 1944 3 651 1562 57 16 0 chr5 8755133 8755325 -143781934 - B2_Mm2 SINE B2 0 195 1 3 651 1937 65 6 58 chr5 8755325 8755481 -143781778 - MusHAL1 LINE L1 -769 1943 1792 3 651 10299 52 9 7 chr5 8755485 8757440 -143779819 - L1Md_F2 LINE L1 0 6582 4623 3 651 2860 85 29 24 chr5 8757442 8757851 -143779408 - RLTR10A LTR ERVK 0 411 1 3 651 5190 74 19 14 chr5 8757851 8758547 -143778712 - RLTR10-int LTR ERVK -1 1986 1288 3 651 1628 83 5 5 chr5 8758548 8758766 -143778493 - IAP-d-int LTR ERVK -658 5884 5667 3 651 3607 60 85 26 chr5 8758770 8759262 -143777997 - IAP-d-int LTR ERVK -1015 5527 5007 3 651 701 204 33 7 chr5 8759262 8759415 -143777844 - IAP-d-int LTR ERVK -6039 503 347 3 651 1576 93 169 17 chr5 8759409 8759688 -143777571 - IAP-d-int LTR ERVK -1385 602 57 3 651 2828 80 29 24 chr5 8759688 8760097 -143777162 - RLTR10A LTR ERVK 0 411 1 3 651 19796 120 60 22 chr5 8760097 8764423 -143772836 - L1VL2 LINE L1 -1257 4626 308 3 651 349 182 0 25 chr5 8764432 8764511 -143772748 - RLTR17 LTR ERVK -98 594 518 3 651 33658 70 3 5 chr5 8764514 8769740 -143767519 + L1Md_F2 LINE L1 276 5589 -297 3 651 8157 48 2 4 chr5 8769740 8770737 -143766522 + L1Md_F2 LINE L1 5590 6584 -1 3 651 2916 159 4 6 chr5 8770737 8771244 -143766015 - RLTR17 LTR ERVK -185 507 2 3 651 364 255 205 45 chr5 8771246 8771534 -143765725 + Lx9 LINE L1 7264 7597 -47 3 651 329 285 16 16 chr5 8771580 8771705 -143765554 + L1MA6 LINE L1 5808 5932 -368 3 651 258 245 159 41 chr5 8772033 8772178 -143765081 + L1M2 LINE L1 5446 5607 -561 3 651 1132 174 9 62 chr5 8772184 8772344 -143764915 + B3 SINE B2 2 148 -68 3 651 4796 132 28 11 chr5 8772344 8772810 -143764449 - RMER17D2 LTR ERVK 0 809 341 3 651 855 0 0 0 chr5 8772810 8772905 -143764354 + (GGAGA)n Simple_repeat Simple_repeat 2 96 0 3 651 4796 132 28 11 chr5 8772905 8773234 -143764025 - RMER17D2 LTR ERVK -469 340 2 3 651 1132 174 9 62 chr5 8773234 8773300 -143763959 + B3 SINE B2 149 215 -1 3 651 278 273 0 0 chr5 8773308 8773385 -143763874 + L1M2 LINE L1 5599 5675 -616 3 651 276 176 40 13 chr5 8773449 8773524 -143763735 - MTEb LTR MaLR -120 259 183 3 651 243 0 0 0 chr5 8773676 8773703 -143763556 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 651 486 0 0 0 chr5 8773720 8773774 -143763485 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 3 651 896 255 76 15 chr5 8773828 8774091 -143763168 + B4 SINE B4 1 279 -13 3 651 423 0 0 0 chr5 8774327 8774374 -143762885 + (TAAAA)n Simple_repeat Simple_repeat 3 49 0 3 651 233 342 16 40 chr5 8774669 8774794 -143762465 + MER5C DNA MER1_type 52 173 -140 3 651 608 38 13 0 chr5 8774992 8775071 -143762188 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 651 598 186 18 0 chr5 8775071 8775184 -143762075 - B1_Mus1 SINE Alu -33 115 1 3 651 702 39 0 89 chr5 8776356 8776371 -143760888 - B1_Mus2 SINE Alu 0 147 137 3 651 216 0 0 0 chr5 8776371 8776395 -143760864 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 651 702 39 0 89 chr5 8776395 8776491 -143760768 - B1_Mus2 SINE Alu -11 136 46 3 651 287 158 34 34 chr5 8776438 8776497 -143760762 - RLTR25A LTR ERVK -531 572 514 3 651 945 156 0 0 chr5 8776880 8777047 -143760212 + GA-rich Low_complexity Low_complexity 4 170 0 3 651 636 169 88 8 chr5 8777049 8777174 -143760085 + B1_Mur2 SINE Alu 7 141 -8 3 651 1176 91 0 0 chr5 8777215 8777391 -143759868 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 651 871 199 44 11 chr5 8778912 8779095 -143758164 + B3 SINE B2 28 216 0 4 651 565 292 0 15 chr5 8779189 8779321 -143757938 + ID_B1 SINE B4 85 214 -10 4 651 951 9 0 0 chr5 8779321 8779429 -143757830 + (GAA)n Simple_repeat Simple_repeat 2 109 0 4 651 429 81 0 0 chr5 8779429 8779491 -143757768 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 4 651 1041 118 28 0 chr5 8779595 8779739 -143757520 + B1_Mus1 SINE Alu 1 148 0 4 651 308 62 82 45 chr5 8779743 8779769 -143757490 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 651 1252 62 14 0 chr5 8779769 8779914 -143757345 + B1_Mm SINE Alu 1 147 0 4 651 308 62 82 45 chr5 8779914 8780021 -143757238 + (CAAA)n Simple_repeat Simple_repeat 4 112 0 4 651 522 253 35 76 chr5 8780155 8780326 -143756933 + RSINE1 SINE B4 2 165 0 4 651 2286 148 37 5 chr5 8780500 8780874 -143756385 - ORR1B1 LTR MaLR -8 386 1 4 651 2181 164 74 3 chr5 8781117 8781504 -143755755 + RMER1B Other Other 633 1048 -18 4 651 342 0 0 0 chr5 8781504 8781542 -143755717 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 652 6993 180 71 15 chr5 8782230 8783601 -143753658 + Lx5 LINE L1 5604 7050 0 4 652 26250 117 8 23 chr5 8783846 8789628 -143747631 + L1_Mus2 LINE L1 415 5917 -649 4 652 398 248 28 28 chr5 8789806 8789914 -143747345 - RSINE1 SINE B4 -2 163 56 4 652 438 329 6 56 chr5 8790161 8790322 -143746937 + B4A SINE B4 4 156 -136 4 652 338 0 24 0 chr5 8790406 8790448 -143746811 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 652 678 123 0 0 chr5 8791199 8791329 -143745930 + (CCAA)n Simple_repeat Simple_repeat 2 131 0 4 652 1858 165 71 41 chr5 8791540 8791951 -143745308 - RMER10A LTR ERVL -19 423 1 4 652 826 276 19 19 chr5 8793083 8793290 -143743969 + B4A SINE B4 1 207 -85 4 652 662 178 98 23 chr5 8793524 8793656 -143743603 + B1_Mur2 SINE Alu 1 142 -7 4 652 213 175 0 0 chr5 8793657 8793697 -143743562 + (ATG)n Simple_repeat Simple_repeat 3 42 0 4 652 277 252 71 15 chr5 8793761 8793864 -143743395 + PB1D10 SINE Alu 4 109 -8 4 652 938 66 0 0 chr5 8794565 8794686 -143742573 + B1_Mus1 SINE Alu 28 148 0 4 652 252 0 0 0 chr5 8794686 8794714 -143742545 + (A)n Simple_repeat Simple_repeat 1 28 0 4 652 382 328 90 73 chr5 8794934 8795223 -143742036 + ORR1E LTR MaLR 64 357 -2 4 652 242 358 41 58 chr5 8795428 8795600 -143741659 - L2a LINE L2 -284 3142 2974 4 652 290 73 0 0 chr5 8795949 8795990 -143741269 - MTC LTR MaLR -380 41 1 4 652 410 167 107 10 chr5 8796311 8796414 -143740845 - HAL1-2a_MD LINE L1 -501 2523 2411 4 652 518 267 97 54 chr5 8796477 8796663 -143740596 + RMER30 DNA MER1_type 5 198 -4 4 652 450 0 0 0 chr5 8797693 8797743 -143739516 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 652 283 276 64 116 chr5 8799647 8799819 -143737440 + RSINE1 SINE B4 3 165 0 4 652 384 40 0 0 chr5 8799832 8799882 -143737377 + (A)n Simple_repeat Simple_repeat 1 50 0 4 652 555 43 0 0 chr5 8800559 8800629 -143736630 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 652 407 242 26 126 chr5 8800649 8800800 -143736459 - ID_B1 SINE B4 -2 222 87 4 652 1208 56 14 0 chr5 8801863 8802007 -143735252 + B1_Mm SINE Alu 2 147 0 4 652 216 0 0 0 chr5 8802007 8802031 -143735228 + (A)n Simple_repeat Simple_repeat 1 24 0 4 652 23 0 0 0 chr5 8802145 8802168 -143735091 + AT_rich Low_complexity Low_complexity 1 23 0 4 652 204 97 0 0 chr5 8802207 8802238 -143735021 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 4 652 9418 94 28 20 chr5 8802242 8803230 -143734029 - Lx3A LINE L1 -16 6965 5955 4 652 243 0 0 0 chr5 8803230 8803257 -143734002 + (TTA)n Simple_repeat Simple_repeat 2 28 0 4 652 9418 94 28 20 chr5 8803257 8803636 -143733623 - Lx3A LINE L1 -1027 5954 5587 4 652 5423 65 1 3 chr5 8803637 8804328 -143732931 + Lx3A LINE L1 4890 5579 -307 4 652 357 24 0 0 chr5 8804517 8804559 -143732700 + (TAG)n Simple_repeat Simple_repeat 1 42 0 4 652 240 393 62 0 chr5 8804652 8804764 -143732495 - PB1D9 SINE Alu 0 120 2 4 652 338 365 89 47 chr5 8804970 8805160 -143732099 + B4 SINE B4 84 281 -11 4 652 336 222 55 92 chr5 8805772 8805881 -143731378 - PB1D10 SINE Alu 0 117 13 4 652 281 336 48 0 chr5 8806510 8806614 -143730645 - L2 LINE L2 -825 2594 2486 4 652 197 352 120 26 chr5 8806679 8806988 -143730271 - L2 LINE L2 -1558 1861 1524 4 652 788 266 49 55 chr5 8806989 8807318 -143729941 - Tigger7 DNA MER2_type -1 2490 2202 4 652 360 0 0 0 chr5 8807623 8807663 -143729596 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 652 306 139 98 37 chr5 8807665 8807747 -143729512 + Lx9 LINE L1 7517 7603 -41 4 652 1401 201 20 45 chr5 8807751 8808043 -143729216 - RLTR20B2 LTR ERVK 0 560 276 4 652 373 218 151 47 chr5 8808045 8808151 -143729108 - PB1D9 SINE Alu 0 120 4 4 652 1727 35 15 0 chr5 8808195 8808398 -143728861 - L1Md_F2 LINE L1 0 6582 6377 4 652 3321 21 0 0 chr5 8808400 8808772 -143728487 + L1Md_F2 LINE L1 5588 5959 -623 4 652 1030 170 116 40 chr5 8808772 8809023 -143728236 - RLTR20B2 LTR ERVK -269 291 22 4 652 342 0 0 0 chr5 8809126 8809164 -143728095 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 652 284 247 53 27 chr5 8809661 8809736 -143727523 - ID2 SINE ID -2 81 5 4 652 1211 75 0 13 chr5 8809860 8810009 -143727250 + B1_Mus1 SINE Alu 1 147 -1 4 652 432 0 0 0 chr5 8811098 8811146 -143726113 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 652 446 260 10 10 chr5 8811290 8811391 -143725868 - B1F SINE Alu -48 101 1 4 652 318 217 42 0 chr5 8811457 8811528 -143725731 + PB1D10 SINE Alu 43 113 -4 4 652 186 43 0 0 chr5 8811548 8811571 -143725688 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 652 204 374 20 0 chr5 8812407 8812506 -143724753 - MIRm SINE MIR -112 164 64 4 652 297 0 0 0 chr5 8813413 8813446 -143723813 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 652 271 203 75 45 chr5 8814077 8814144 -143723115 - RSINE1 SINE B4 -93 72 4 4 652 271 296 22 120 chr5 8815200 8815292 -143721967 + B3A SINE B2 86 168 -30 4 652 180 0 0 0 chr5 8815836 8815856 -143721403 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 652 2379 176 15 61 chr5 8815909 8816453 -143720806 - RLTR31_Mm LTR ERVK -42 519 1 4 652 225 167 169 56 chr5 8816456 8816545 -143720714 - L1_Rod LINE L1 -807 5040 4942 4 652 1273 306 53 24 chr5 8816540 8816755 -143720504 - L1_Rod LINE L1 -3913 1934 1708 4 652 327 49 0 0 chr5 8816755 8816796 -143720463 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 4 652 1273 306 53 24 chr5 8816796 8817290 -143719969 - L1_Rod LINE L1 -4140 1707 1206 4 652 3817 148 47 37 chr5 8817722 8818376 -143718883 - Lx4B LINE L1 -5 7053 6393 4 652 3869 113 8 22 chr5 8818382 8818977 -143718282 - Lx4B LINE L1 -787 6271 5685 4 652 2526 119 48 126 chr5 8818974 8819520 -143717739 + L1_Mur2 LINE L1 3295 3797 -2080 4 652 1323 125 67 0 chr5 8819520 8819744 -143717515 + L1_Mur2 LINE L1 4290 4528 -1349 4 652 324 311 0 36 chr5 8820239 8820406 -143716853 + CT-rich Low_complexity Low_complexity 1 161 0 4 652 1213 89 17 6 chr5 8820751 8820932 -143716327 - L1_Mur2 LINE L1 -1825 4052 3870 4 652 435 229 40 92 chr5 8821614 8821787 -143715472 - RLTR40 LTR ERVK -625 192 29 4 652 28 0 0 0 chr5 8821906 8821934 -143715325 + AT_rich Low_complexity Low_complexity 1 28 0 4 652 27 0 0 0 chr5 8822436 8822463 -143714796 + AT_rich Low_complexity Low_complexity 1 27 0 4 652 370 266 8 114 chr5 8822477 8822600 -143714659 - B3A SINE B2 -84 114 5 4 652 465 19 0 0 chr5 8822649 8822703 -143714556 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 652 383 323 44 31 chr5 8822952 8823112 -143714147 + MIR SINE MIR 39 200 -62 4 652 25 75 0 0 chr5 8823521 8823574 -143713685 + AT_rich Low_complexity Low_complexity 1 53 0 4 652 218 192 19 0 chr5 8825361 8825413 -143711846 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 652 1999 171 32 15 chr5 8825901 8826304 -143710955 + RMER17C LTR ERVK 1 410 0 4 652 733 225 61 93 chr5 8826331 8826644 -143710615 + MER33 DNA MER1_type 22 324 0 4 652 1988 231 14 12 chr5 8826689 8827106 -143710153 - MTD LTR MaLR -1 418 1 4 652 333 247 13 0 chr5 8827575 8827652 -143709607 - B3 SINE B2 -138 78 1 4 652 24 0 0 0 chr5 8827999 8828023 -143709236 + AT_rich Low_complexity Low_complexity 1 24 0 4 652 189 94 0 0 chr5 8828139 8828171 -143709088 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 652 439 302 107 0 chr5 8828254 8828413 -143708846 + Lx9 LINE L1 7130 7305 -339 4 652 294 29 0 0 chr5 8829214 8829249 -143708010 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 652 1318 175 5 5 chr5 8829791 8830003 -143707256 - B3 SINE B2 -3 213 2 4 652 2246 155 69 19 chr5 8831363 8831422 -143705837 - ORR1B1 LTR MaLR 0 394 337 4 652 678 13 0 0 chr5 8831422 8831501 -143705758 + (GAAAA)n Simple_repeat Simple_repeat 2 80 0 4 652 2246 155 69 19 chr5 8831501 8831816 -143705443 - ORR1B1 LTR MaLR -58 336 2 4 652 295 298 96 48 chr5 8833054 8833241 -143704018 - B3A SINE B2 -1 197 2 4 652 332 56 19 0 chr5 8833413 8833467 -143703792 - 4.5SRNA scRNA scRNA -39 55 1 4 652 287 250 12 24 chr5 8836666 8836748 -143700511 + (CATATA)n Simple_repeat Simple_repeat 1 81 0 4 652 493 323 6 18 chr5 8837044 8837211 -143700048 + B4A SINE B4 2 166 -126 4 652 459 0 0 0 chr5 8837826 8837877 -143699382 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 4 652 258 307 13 0 chr5 8838091 8838166 -143699093 + CT-rich Low_complexity Low_complexity 2 77 0 4 652 194 289 79 66 chr5 8838418 8838570 -143698689 - MIRb SINE MIR -76 192 39 4 652 472 261 122 41 chr5 8840136 8840183 -143697076 - B4 SINE B4 0 292 251 5 652 3514 30 0 0 chr5 8840183 8840579 -143696680 + MTA_Mm LTR MaLR 1 396 0 5 652 472 261 122 41 chr5 8840579 8840703 -143696556 - B4 SINE B4 -42 250 107 5 652 450 0 0 0 chr5 8840719 8840769 -143696490 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 652 476 176 21 42 chr5 8841089 8841184 -143696075 + B3 SINE B2 117 209 -7 5 652 211 261 29 14 chr5 8841383 8841453 -143695806 - MIR3 SINE MIR -11 197 127 5 652 605 60 12 0 chr5 8841746 8841829 -143695430 + B1_Mm SINE Alu 64 147 0 5 652 461 251 97 54 chr5 8841830 8842234 -143695025 + L1M4c LINE L1 2276 2708 -3668 5 652 230 193 17 50 chr5 8842357 8842417 -143694842 + L1_Mur2 LINE L1 2948 3005 -2872 5 652 909 186 16 16 chr5 8842533 8842719 -143694540 + B3A SINE B2 7 192 -6 5 652 285 89 0 0 chr5 8842918 8842963 -143694296 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 652 606 243 35 7 chr5 8842963 8843104 -143694155 - B3A SINE B2 -52 146 2 5 652 262 271 69 28 chr5 8843134 8843278 -143693981 + L1M4c LINE L1 3598 3747 -2632 5 652 233 253 21 94 chr5 8843298 8843394 -143693865 + L1M4c LINE L1 3840 3928 -2451 5 652 21 57 0 0 chr5 8843878 8843913 -143693346 + AT_rich Low_complexity Low_complexity 1 35 0 5 652 406 316 175 36 chr5 8843913 8844409 -143692850 + L1M4c LINE L1 4254 4818 -1561 5 652 274 279 96 32 chr5 8844429 8844553 -143692706 + L1M4c LINE L1 5990 6128 -408 5 652 873 86 148 0 chr5 8845100 8845228 -143692031 + B1_Mm SINE Alu 1 147 0 5 652 258 105 0 0 chr5 8845231 8845269 -143691990 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 5 652 247 283 91 36 chr5 8845290 8845400 -143691859 + PB1D10 SINE Alu 1 116 -1 5 652 1242 208 54 60 chr5 8846339 8846708 -143690551 - RMER10B LTR ERVL -31 367 1 5 652 313 296 78 0 chr5 8846841 8846956 -143690303 - RMER17C-int LTR ERVK -182 3056 2933 5 652 491 170 0 10 chr5 8846977 8847078 -143690181 + (TA)n Simple_repeat Simple_repeat 2 101 0 5 652 378 204 74 154 chr5 8847249 8847411 -143689848 - RLTR19-int LTR ERVK -2175 3962 3814 5 652 290 252 38 57 chr5 8847606 8847711 -143689548 - RLTR19-int LTR ERVK -2846 3291 3189 5 652 1409 231 123 42 chr5 8847760 8848573 -143688686 - MYSERV6-int LTR ERVK -271 8688 8092 5 652 265 173 0 19 chr5 8848622 8848675 -143688584 - MYSERV6-int LTR ERVK -4076 2061 2010 5 652 195 212 43 43 chr5 8849307 8849376 -143687883 - MIRc SINE MIR -120 148 80 5 652 243 0 0 0 chr5 8849821 8849848 -143687411 + (A)n Simple_repeat Simple_repeat 1 27 0 5 652 297 0 0 0 chr5 8849942 8849975 -143687284 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 652 221 233 0 0 chr5 8850533 8850576 -143686683 + GA-rich Low_complexity Low_complexity 3 45 0 5 652 281 321 195 6 chr5 8850606 8850775 -143686484 - MLT1H LTR MaLR -330 219 19 5 652 524 308 19 0 chr5 8851955 8852114 -143685145 - RSINE1 SINE B4 0 165 4 5 652 435 299 70 6 chr5 8854159 8854317 -143682942 + B3 SINE B2 11 178 -38 5 652 24 67 0 0 chr5 8854334 8854379 -143682880 + AT_rich Low_complexity Low_complexity 1 45 0 5 652 808 188 0 7 chr5 8854382 8854532 -143682727 - B1_Mur3 SINE Alu 0 149 1 5 652 2059 166 77 37 chr5 8854841 8855242 -143682017 - MTC LTR MaLR 0 421 5 5 652 817 88 16 0 chr5 8855356 8855481 -143681778 + URR1B DNA MER1_type 98 224 -1 5 652 452 218 39 58 chr5 8855481 8855512 -143681747 - CYRA11_Mm Unknown Y-chromosome -318 299 147 5 652 204 40 0 0 chr5 8856827 8856852 -143680407 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 652 672 167 89 41 chr5 8856854 8857023 -143680236 - B2_Mm2 SINE B2 -16 179 3 5 652 3554 118 45 70 chr5 8857268 8858025 -143679234 - RMER17A LTR ERVK -13 738 1 5 652 616 105 0 66 chr5 8858166 8858288 -143678971 - Lx LINE L1 0 6654 6541 5 652 1144 186 75 26 chr5 8858446 8858711 -143678548 - RLTR16 LTR ERVK -5 500 223 5 652 180 111 0 0 chr5 8858874 8858901 -143678358 + (CAA)n Simple_repeat Simple_repeat 1 27 0 5 652 378 0 0 0 chr5 8858986 8859028 -143678231 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 5 652 328 349 40 0 chr5 8859869 8859995 -143677264 - B1F1 SINE Alu -5 144 14 5 652 1125 172 19 0 chr5 8860439 8860648 -143676611 - URR1B DNA MER1_type 0 225 13 5 652 189 0 0 0 chr5 8860746 8860767 -143676492 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 652 371 329 47 102 chr5 8860859 8861181 -143676078 - MLT1D LTR MaLR -200 305 2 5 652 893 236 59 5 chr5 8862210 8862414 -143674845 - B3 SINE B2 -1 215 1 5 652 608 0 14 0 chr5 8862830 8862902 -143674357 + (GAAA)n Simple_repeat Simple_repeat 3 75 0 5 652 682 316 80 17 chr5 8865072 8865638 -143671621 - L1MB1 LINE L1 -278 6022 5426 5 652 234 0 0 0 chr5 8866097 8866123 -143671136 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 652 385 140 0 0 chr5 8867195 8867252 -143670007 + B1_Mur3 SINE Alu 79 135 -14 5 652 345 47 0 0 chr5 8867256 8867299 -143669960 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 5 652 526 261 49 7 chr5 8867519 8867662 -143669597 + B1F2 SINE Alu 1 149 0 5 652 231 263 53 0 chr5 8868043 8868100 -143669159 + L1M2a LINE L1 352 411 -6757 5 652 365 327 0 0 chr5 8868865 8868969 -143668290 + PB1D10 SINE Alu 3 106 -11 5 652 471 282 6 33 chr5 8869193 8869376 -143667883 - B3A SINE B2 -1 197 20 5 652 3161 47 3 8 chr5 8869688 8870078 -143667181 - L1Md_F2 LINE L1 0 6582 6195 5 652 939 283 85 56 chr5 8870107 8870788 -143666471 + L1M2a LINE L1 3168 3868 -3296 5 652 371 222 17 45 chr5 8871171 8871379 -143665880 + (TATAA)n Simple_repeat Simple_repeat 1 202 0 5 652 434 192 28 50 chr5 8871294 8871475 -143665784 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 5 652 1560 203 195 80 chr5 8871598 8872075 -143665184 + MT2A LTR ERVL 2 533 0 5 652 408 20 0 0 chr5 8872570 8872619 -143664640 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 652 189 0 0 0 chr5 8872635 8872656 -143664603 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 5 652 375 147 36 9 chr5 8872686 8872796 -143664463 + (CAGA)n Simple_repeat Simple_repeat 2 114 0 5 652 188 331 17 63 chr5 8873623 8873797 -143663462 - L2 LINE L2 -3188 231 66 5 652 192 77 0 0 chr5 8873885 8873911 -143663348 + (TAA)n Simple_repeat Simple_repeat 3 28 0 5 652 5854 69 0 1 chr5 8874707 8875446 -143661813 + L1Md_F2 LINE L1 4849 5586 -297 5 652 7969 58 1 4 chr5 8875446 8876432 -143660827 + L1Md_F2 LINE L1 5587 6569 -13 5 652 340 274 0 0 chr5 8876473 8876557 -143660702 + L1MC1 LINE L1 6128 6211 -122 5 652 23 68 0 0 chr5 8876558 8876602 -143660657 + AT_rich Low_complexity Low_complexity 1 44 0 5 652 246 200 40 0 chr5 8876616 8876666 -143660593 - RSINE1 SINE B4 -19 146 95 5 652 232 230 0 47 chr5 8876666 8876730 -143660529 + L1MC1 LINE L1 6256 6316 -17 5 652 384 59 0 0 chr5 8877564 8877615 -143659644 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 652 550 226 9 0 chr5 8877615 8877721 -143659538 - RSINE1 SINE B4 -14 151 45 5 652 233 290 0 0 chr5 8877910 8877979 -143659280 - ID4 SINE ID -13 70 2 5 652 1075 122 6 104 chr5 8877980 8878231 -143659028 + Lx3B LINE L1 6728 6961 -47 5 652 25 51 0 0 chr5 8878754 8878793 -143658466 + AT_rich Low_complexity Low_complexity 1 39 0 5 652 34 72 0 0 chr5 8878874 8878943 -143658316 + AT_rich Low_complexity Low_complexity 1 69 0 5 652 2507 131 49 10 chr5 8879041 8879449 -143657810 + Lx4A LINE L1 6633 7056 -2 5 652 237 337 0 0 chr5 8880013 8880099 -143657160 + LTR33 LTR ERVL 430 515 0 5 652 243 292 53 93 chr5 8880144 8880295 -143656964 + B4A SINE B4 8 152 -140 5 652 278 379 66 10 chr5 8880308 8880485 -143656774 + B4 SINE B4 105 281 -11 5 652 426 296 8 0 chr5 8880506 8880638 -143656621 + MTE-int LTR MaLR 73 205 -1375 5 652 1116 319 139 40 chr5 8880945 8881670 -143655589 + MTE-int LTR MaLR 324 1120 -460 5 652 288 130 0 0 chr5 8881710 8881756 -143655503 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 652 705 296 108 27 chr5 8881960 8882255 -143655004 + L1MDa LINE L1 26 344 -6289 5 652 324 287 93 93 chr5 8882294 8882540 -143654719 - ORR1E LTR MaLR -80 279 34 5 652 324 0 0 0 chr5 8882778 8882814 -143654445 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 652 332 350 96 35 chr5 8883521 8883948 -143653311 - L2 LINE L2 -407 3012 2560 5 652 1026 264 33 14 chr5 8883980 8884406 -143652853 + RLTR16 LTR ERVK 1 473 -32 5 652 420 350 63 8 chr5 8884598 8884866 -143652393 - L2 LINE L2 -912 2507 2225 5 652 276 329 24 12 chr5 8884895 8885064 -143652195 + L1_Rod LINE L1 48 218 -6954 5 652 2366 162 188 0 chr5 8885094 8885620 -143651639 + Lx9 LINE L1 7019 7643 -1 5 652 691 331 71 17 chr5 8885639 8885798 -143651461 - L2 LINE L2 -1217 2202 2040 5 652 1124 149 118 10 chr5 8885798 8886001 -143651258 - URR1A DNA MER1_type -1 225 1 5 652 691 331 71 17 chr5 8886001 8886262 -143650997 - L2 LINE L2 -1380 2039 1759 5 652 432 0 0 0 chr5 8886671 8886719 -143650540 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 652 308 161 16 31 chr5 8887227 8887291 -143649968 + Ricksha_c DNA MuDR 126 188 -1860 5 652 207 274 0 47 chr5 8887291 8887398 -143649861 + T-rich Low_complexity Low_complexity 4 105 0 5 652 265 105 0 0 chr5 8887413 8887451 -143649808 - B1_Mus2 SINE Alu -9 138 101 5 652 659 273 12 6 chr5 8887451 8887613 -143649646 + Ricksha_c DNA MuDR 1487 1649 -399 5 652 573 247 35 75 chr5 8887628 8887829 -143649430 - B3A SINE B2 -1 197 5 5 652 1078 29 0 0 chr5 8888036 8888174 -143649085 + B1_Mm SINE Alu 9 146 -1 5 652 4060 254 32 10 chr5 8888193 8889124 -143648135 - Lx8 LINE L1 -153 7320 6369 5 652 1737 181 37 23 chr5 8889135 8889486 -143647773 - ORR1B1 LTR MaLR -8 386 31 5 652 244 0 0 53 chr5 8889536 8889574 -143647685 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 5 652 570 285 96 58 chr5 8889575 8890183 -143647076 - Lx8 LINE L1 -1148 6325 5711 5 652 426 173 0 24 chr5 8890190 8890273 -143646986 + MTD LTR MaLR 7 87 -332 5 652 1834 104 7 18 chr5 8890279 8890553 -143646706 + Lx LINE L1 6379 6649 -5 5 652 1122 214 8 11 chr5 8890553 8890813 -143646446 + RLTR22_Mur LTR ERVK 504 762 -1086 5 652 241 154 0 37 chr5 8890818 8890872 -143646387 + T-rich Low_complexity Low_complexity 3 54 0 5 652 2383 97 3 70 chr5 8890877 8891233 -143646026 - L1_Mus2 LINE L1 0 6566 6235 5 652 395 191 99 22 chr5 8891342 8891433 -143645826 + RLTR22_Mur LTR ERVK 1588 1685 -163 5 652 21 57 0 0 chr5 8891504 8891539 -143645720 + AT_rich Low_complexity Low_complexity 1 35 0 5 652 221 316 62 32 chr5 8892235 8892399 -143644860 - MIR SINE MIR -85 191 20 6 652 524 313 15 8 chr5 8892981 8893113 -143644146 - RSINE1 SINE B4 -4 161 29 6 652 489 145 331 15 chr5 8893113 8893246 -143644013 + Lx4B LINE L1 6875 7049 -9 6 652 24 77 0 0 chr5 8893768 8893820 -143643439 + GC_rich Low_complexity Low_complexity 1 52 0 6 652 216 0 0 0 chr5 8895151 8895175 -143642084 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 652 291 210 48 0 chr5 8895598 8895660 -143641599 - MARNA DNA Mariner -181 405 341 6 652 314 345 161 28 chr5 8895665 8896217 -143641042 - L2a LINE L2 -185 3241 2608 6 652 243 79 0 0 chr5 8897104 8897142 -143640117 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 6 652 504 86 0 0 chr5 8897273 8897343 -143639916 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 652 541 266 24 48 chr5 8897585 8897751 -143639508 - RSINE1 SINE B4 0 165 4 6 652 309 109 0 0 chr5 8899052 8899098 -143638161 + (TTTTC)n Simple_repeat Simple_repeat 4 49 0 6 652 1137 90 0 7 chr5 8900368 8900513 -143636746 - B1_Mm SINE Alu -2 145 2 6 652 631 211 260 12 chr5 8901122 8901295 -143635964 + B3 SINE B2 1 216 0 6 652 888 189 7 7 chr5 8901317 8901466 -143635793 + B1_Mur2 SINE Alu 1 149 0 6 652 23 33 0 0 chr5 8901488 8901518 -143635741 + AT_rich Low_complexity Low_complexity 1 30 0 6 652 249 33 0 0 chr5 8901596 8901626 -143635633 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 652 847 301 28 41 chr5 8901719 8902083 -143635176 + L1MB2 LINE L1 5797 6155 -16 6 652 180 0 0 0 chr5 8902180 8902200 -143635059 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 652 189 0 0 0 chr5 8904675 8904696 -143632563 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 652 573 324 57 24 chr5 8904760 8904972 -143632287 + MIR SINE MIR 38 256 -6 6 652 2639 62 15 3 chr5 8905012 8905338 -143631921 - L1Md_F2 LINE L1 -1 6581 6252 6 652 510 188 0 0 chr5 8906237 8906338 -143630921 + (TA)n Simple_repeat Simple_repeat 1 101 0 6 652 353 221 46 11 chr5 8907084 8907171 -143630088 + B1_Mus2 SINE Alu 58 147 0 6 652 797 158 6 0 chr5 8907620 8907797 -143629462 + CT-rich Low_complexity Low_complexity 1 178 0 6 652 215 285 83 38 chr5 8908103 8908260 -143628999 - L2 LINE L2 -460 2959 2796 6 652 341 261 0 108 chr5 8908455 8908584 -143628675 + PB1D10 SINE Alu 3 117 0 6 652 263 254 30 0 chr5 8908585 8908652 -143628607 + GA-rich Low_complexity Low_complexity 1 69 0 6 652 257 147 42 56 chr5 8908655 8908727 -143628532 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 6 652 948 283 0 22 chr5 8909922 8910146 -143627113 + B4 SINE B4 2 220 -72 6 652 231 36 0 0 chr5 8910148 8910176 -143627083 + (A)n Simple_repeat Simple_repeat 1 28 0 6 652 328 281 17 42 chr5 8910914 8911033 -143626226 - Charlie4a DNA MER1_type -5 503 388 6 652 333 0 0 0 chr5 8911947 8911984 -143625275 + (A)n Simple_repeat Simple_repeat 1 37 0 6 652 360 64 0 0 chr5 8912195 8912242 -143625017 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 652 24 53 0 0 chr5 8912250 8912288 -143624971 + AT_rich Low_complexity Low_complexity 1 38 0 6 653 339 85 0 0 chr5 8914594 8914641 -143622618 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 653 24 0 0 0 chr5 8915185 8915209 -143622050 + AT_rich Low_complexity Low_complexity 1 24 0 6 653 571 273 38 8 chr5 8915241 8915374 -143621885 - B3A SINE B2 -35 163 27 6 653 5257 82 3 8 chr5 8915380 8916047 -143621212 - L1_Mus1 LINE L1 0 6567 5904 6 653 2697 51 0 0 chr5 8916047 8916416 -143620843 + L1_Mus1 LINE L1 5541 5910 -656 6 653 404 291 0 49 chr5 8917798 8917921 -143619338 + PB1D7 SINE Alu 3 119 -1 6 653 778 55 9 0 chr5 8918298 8918407 -143618852 + B1_Mm SINE Alu 38 147 0 6 653 301 207 0 35 chr5 8918472 8918557 -143618702 + L1MA4A LINE L1 6220 6301 -2 6 653 249 348 22 0 chr5 8919520 8919612 -143617647 + (CATG)n Simple_repeat Simple_repeat 3 96 0 6 653 210 143 0 0 chr5 8919706 8919741 -143617518 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 653 264 310 0 0 chr5 8919785 8919856 -143617403 + (CATG)n Simple_repeat Simple_repeat 1 71 0 6 653 180 0 0 0 chr5 8919856 8919876 -143617383 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 653 236 169 119 0 chr5 8920998 8921057 -143616202 - L1MC4 LINE L1 -196 7846 7781 6 653 670 254 131 29 chr5 8921177 8921448 -143615811 - MTC LTR MaLR -21 400 118 6 653 429 70 0 0 chr5 8921505 8921562 -143615697 + (T)n Simple_repeat Simple_repeat 1 57 0 6 653 3112 56 69 0 chr5 8921562 8921970 -143615289 - RLTR1B LTR ERV1 -76 436 1 6 653 22260 42 84 102 chr5 8921970 8923969 -143613290 - RLTR1B-int LTR ERV1 0 3299 1105 6 653 230 166 78 89 chr5 8923969 8924148 -143613111 + RMER17D LTR ERVK 335 511 -378 6 653 22260 42 84 102 chr5 8924148 8924578 -143612681 - RLTR1B-int LTR ERV1 0 1104 631 6 653 387 0 0 0 chr5 8924578 8924621 -143612638 + (TGG)n Simple_repeat Simple_repeat 3 45 0 6 653 22260 42 84 102 chr5 8924621 8925372 -143611887 - RLTR1B-int LTR ERV1 -2669 630 3 6 653 1159 96 24 0 chr5 8925372 8925538 -143611721 - RLTR1B LTR ERV1 0 512 343 6 653 409 131 0 0 chr5 8925542 8925603 -143611656 - RLTR1B LTR ERV1 -102 410 350 6 653 280 308 86 0 chr5 8925607 8925724 -143611535 + Lx8 LINE L1 7231 7357 -116 6 653 261 0 0 0 chr5 8925799 8925828 -143611431 + (TA)n Simple_repeat Simple_repeat 1 29 0 6 653 225 0 0 0 chr5 8925828 8925852 -143611407 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 653 254 351 61 46 chr5 8925865 8926062 -143611197 + Lx8 LINE L1 7190 7389 -84 6 653 1001 89 81 7 chr5 8926088 8926224 -143611035 + B1_Mm SINE Alu 2 147 0 6 653 732 54 0 0 chr5 8926232 8926325 -143610934 + (GGAAA)n Simple_repeat Simple_repeat 3 95 0 6 653 200 208 19 0 chr5 8926327 8926380 -143610879 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 653 2776 124 78 16 chr5 8926953 8927403 -143609856 - Lx LINE L1 -13 6641 6164 6 653 1210 133 0 0 chr5 8927403 8927584 -143609675 + Lx LINE L1 6000 6180 -474 6 653 315 273 12 49 chr5 8928277 8928358 -143608901 + ID4 SINE ID 3 80 -3 6 653 249 301 12 0 chr5 8929034 8929117 -143608142 + (TA)n Simple_repeat Simple_repeat 1 84 0 6 653 499 205 223 16 chr5 8929355 8929548 -143607711 - L1MB7 LINE L1 -43 6141 5909 6 653 633 286 6 47 chr5 8929571 8929584 -143607675 - RSINE1 SINE B4 0 165 154 6 653 480 35 0 0 chr5 8929584 8929642 -143607617 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 653 633 286 6 47 chr5 8929642 8929797 -143607462 - RSINE1 SINE B4 -12 153 4 6 653 354 309 34 11 chr5 8929797 8929974 -143607285 - L1MB7 LINE L1 -282 5896 5716 6 653 1304 48 0 0 chr5 8931667 8931814 -143605445 + B1_Mus2 SINE Alu 1 147 0 6 653 554 292 69 61 chr5 8931929 8932169 -143605090 + L1MA6 LINE L1 5896 6140 -160 6 653 301 325 0 0 chr5 8932169 8932249 -143605010 - ID4_ SINE ID 0 83 4 6 653 554 292 69 61 chr5 8932249 8932354 -143604905 + L1MA6 LINE L1 6141 6244 -56 6 653 979 266 93 16 chr5 8932365 8932613 -143604646 + B4 SINE B4 3 269 -23 6 653 515 112 11 0 chr5 8932633 8932722 -143604537 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 653 604 227 18 107 chr5 8933040 8933126 -143604133 + MTE2b LTR MaLR 1 76 -303 6 653 3249 119 35 33 chr5 8933126 8933614 -143603645 - Lx LINE L1 -4 6650 6162 6 653 604 227 18 107 chr5 8933614 8933695 -143603564 + MTE2b LTR MaLR 77 153 -226 6 653 39 74 0 0 chr5 8934549 8934630 -143602629 + AT_rich Low_complexity Low_complexity 1 81 0 6 653 308 262 120 24 chr5 8936524 8936555 -143600704 + L1MB3 LINE L1 6038 6066 -114 6 653 189 0 0 0 chr5 8936555 8936576 -143600683 + (TGG)n Simple_repeat Simple_repeat 2 22 0 6 653 332 262 116 22 chr5 8936576 8936677 -143600582 + L1MB3 LINE L1 6067 6183 0 6 653 1741 36 0 0 chr5 8937058 8937251 -143600008 + B2_Mm1a SINE B2 1 193 0 6 653 242 151 19 0 chr5 8937321 8937374 -143599885 + A-rich Low_complexity Low_complexity 2 55 0 6 653 552 245 9 0 chr5 8937519 8937625 -143599634 + PB1D10 SINE Alu 1 107 -10 6 653 239 236 0 0 chr5 8940010 8940065 -143597194 + ID4 SINE ID 1 55 -28 6 653 4486 40 2 0 chr5 8941521 8942023 -143595236 - L1Md_T LINE L1 0 6582 6080 6 653 426 248 0 37 chr5 8942377 8942486 -143594773 + PB1D10 SINE Alu 13 117 0 6 653 224 328 67 45 chr5 8943383 8943517 -143593742 + B1F1 SINE Alu 7 143 -6 6 653 306 261 127 25 chr5 8943976 8944160 -143593099 + MIR SINE MIR 6 203 -65 6 653 258 254 8 45 chr5 8944521 8944653 -143592606 + (TCTCTG)n Simple_repeat Simple_repeat 2 128 0 6 653 258 254 8 45 chr5 8944836 8944968 -143592291 + (TCTCTG)n Simple_repeat Simple_repeat 2 128 0 6 653 258 254 8 45 chr5 8945151 8945283 -143591976 + (TCTCTG)n Simple_repeat Simple_repeat 2 128 0 6 653 292 268 50 30 chr5 8947579 8947679 -143589580 - MamRep605 Unknown Unknown -142 734 633 6 653 565 324 29 0 chr5 8947877 8947978 -143589281 - L1M2 LINE L1 -1177 4966 4859 6 653 207 0 0 0 chr5 8947978 8948001 -143589258 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 6 653 565 324 29 0 chr5 8948001 8948140 -143589119 - L1M2 LINE L1 -1285 4858 4720 6 653 1286 90 17 6 chr5 8948141 8948320 -143588939 + B2_Mm2 SINE B2 6 186 -9 6 653 869 230 93 29 chr5 8948322 8948667 -143588592 - L1M2 LINE L1 -1417 4726 4360 6 653 257 199 57 80 chr5 8948662 8948837 -143588422 - L1M2 LINE L1 -2847 3296 3126 6 653 295 105 35 0 chr5 8948874 8948931 -143588328 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 653 535 285 117 38 chr5 8949052 8949472 -143587787 - L1M2 LINE L1 -3047 3096 2634 6 653 351 0 0 0 chr5 8951090 8951129 -143586130 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 6 653 1909 279 21 50 chr5 8951140 8951428 -143585831 - Lx5 LINE L1 -18 7032 6751 6 653 3575 41 0 0 chr5 8951428 8951822 -143585437 + MTA_Mm LTR MaLR 1 394 -2 6 653 1909 266 57 41 chr5 8951822 8952224 -143585035 - Lx5 LINE L1 -574 6886 6447 6 653 552 230 73 0 chr5 8952320 8952498 -143584761 - L1_Mur3 LINE L1 -5743 1327 1137 6 653 688 178 25 0 chr5 8952510 8952628 -143584631 - B1_Mur4 SINE Alu -29 121 1 6 653 1168 248 62 15 chr5 8952628 8952952 -143584307 - L1_Mur3 LINE L1 -6539 1173 835 6 653 279 236 23 160 chr5 8953358 8953489 -143583770 - RLTR33 LTR ERVK -97 581 469 6 653 301 203 16 0 chr5 8953601 8953665 -143583594 - RLTR19C LTR ERVK -409 97 33 6 653 387 240 0 0 chr5 8954286 8954361 -143582898 + B4 SINE B4 1 75 -217 6 653 294 237 106 87 chr5 8954405 8954613 -143582646 + Lx7 LINE L1 7485 7696 0 6 653 822 244 22 97 chr5 8954622 8954849 -143582410 + B4A SINE B4 81 290 -2 6 653 219 227 0 0 chr5 8954849 8954893 -143582366 + (CATG)n Simple_repeat Simple_repeat 3 46 0 7 653 411 302 49 11 chr5 8955866 8956021 -143581238 - L1MD1 LINE L1 -17 6342 6088 7 653 294 29 0 0 chr5 8956021 8956056 -143581203 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 653 408 326 77 84 chr5 8956056 8956378 -143580881 - L1MD1 LINE L1 -175 6184 5868 7 653 271 42 62 0 chr5 8956704 8956752 -143580507 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 7 653 1072 87 0 26 chr5 8956757 8956910 -143580349 - B2_Mm2 SINE B2 -45 150 2 7 653 384 245 198 76 chr5 8957019 8957363 -143579896 - L1MD1 LINE L1 -770 5376 4991 7 653 399 21 0 0 chr5 8957984 8958032 -143579227 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 7 653 23 33 0 0 chr5 8958567 8958597 -143578662 + AT_rich Low_complexity Low_complexity 1 30 0 7 653 391 242 162 0 chr5 8959723 8959889 -143577370 - L1MA4A LINE L1 -297 6006 5815 7 653 1198 211 46 54 chr5 8959945 8960316 -143576943 - RLTR9A LTR ERVK 0 368 1 7 653 549 228 51 7 chr5 8960342 8960479 -143576780 - L1MA4A LINE L1 -366 5823 5681 7 653 1415 211 109 4 chr5 8960491 8960823 -143576436 - MTD LTR MaLR -14 405 48 7 653 480 285 81 19 chr5 8960857 8961068 -143576191 - L1MA4A LINE L1 -626 5674 5451 7 653 237 122 24 0 chr5 8961069 8961110 -143576149 - MTD LTR MaLR 0 370 329 7 653 1405 222 119 12 chr5 8961303 8961631 -143575628 - MTD LTR MaLR -56 363 1 7 653 244 380 19 12 chr5 8961780 8961940 -143575319 + RMER15 LTR ERVL 347 507 -68 7 653 1054 311 22 26 chr5 8962023 8962475 -143574784 - L1MA6 LINE L1 -419 6583 6134 7 653 329 279 12 0 chr5 8962480 8962566 -143574693 - ID_B1 SINE B4 -3 221 135 7 653 252 298 171 16 chr5 8962566 8962598 -143574661 - B1F1 SINE Alu 0 144 8 7 653 292 322 72 7 chr5 8962736 8962889 -143574370 - L1MA6 LINE L1 -4197 2652 2490 7 653 394 295 99 74 chr5 8962981 8963465 -143573794 - L1MA6 LINE L1 -4586 2263 1768 7 653 506 304 49 69 chr5 8963703 8963950 -143573309 + RMER15 LTR ERVL 319 560 -15 7 653 439 288 73 47 chr5 8963960 8964172 -143573087 - B4A SINE B4 -21 271 57 7 653 357 309 112 10 chr5 8964266 8964472 -143572787 - L1MA6 LINE L1 -5115 1734 1508 7 653 682 229 0 54 chr5 8965153 8965288 -143571971 + B1_Mur2 SINE Alu 10 139 -10 7 653 216 0 0 0 chr5 8965288 8965312 -143571947 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 653 682 229 0 54 chr5 8965312 8965324 -143571935 + B1_Mur2 SINE Alu 140 149 0 7 653 368 203 31 0 chr5 8965881 8965945 -143571314 - B3 SINE B2 -149 67 2 7 653 602 101 67 0 chr5 8967245 8967394 -143569865 + (CCAA)n Simple_repeat Simple_repeat 1 159 0 7 653 910 153 0 32 chr5 8970251 8970406 -143566853 - B1_Mur4 SINE Alu 0 150 1 7 653 523 284 262 10 chr5 8970460 8970666 -143566593 + MLT1F2 LTR MaLR 1 258 -302 7 653 396 279 291 16 chr5 8971215 8971881 -143565378 + L1M4 LINE L1 3891 4739 -1407 7 653 327 182 0 0 chr5 8972360 8972437 -143564822 + A-rich Low_complexity Low_complexity 1 77 0 7 653 777 286 98 68 chr5 8972645 8973077 -143564182 + MLT2B1 LTR ERVL 84 508 -7 7 653 236 233 167 0 chr5 8973080 8973170 -143564089 + L1M4 LINE L1 4957 5061 -1085 7 653 319 208 78 10 chr5 8973270 8973372 -143563887 + L1M4 LINE L1 5112 5220 -926 7 653 21 0 0 0 chr5 8973905 8973926 -143563333 + AT_rich Low_complexity Low_complexity 1 21 0 7 653 264 224 43 29 chr5 8975191 8975260 -143561999 + ID SINE ID 8 77 -147 7 653 1231 152 132 0 chr5 8975464 8975714 -143561545 - Lx9 LINE L1 -8 7636 7354 7 653 23 33 0 0 chr5 8975847 8975877 -143561382 + AT_rich Low_complexity Low_complexity 1 30 0 7 653 342 0 0 0 chr5 8976630 8976668 -143560591 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 653 306 250 60 40 chr5 8977691 8977791 -143559468 + Lx8 LINE L1 6866 6967 -729 7 653 428 287 52 21 chr5 8977803 8978019 -143559240 + Lx8 LINE L1 7072 7300 -396 7 653 432 174 0 0 chr5 8978365 8978457 -143558802 + (CA)n Simple_repeat Simple_repeat 2 93 0 7 653 269 284 146 10 chr5 8978835 8978931 -143558328 + PB1D10 SINE Alu 9 117 0 7 653 1277 48 0 7 chr5 8979279 8979426 -143557833 + B1_Mus2 SINE Alu 2 147 0 7 653 513 101 0 72 chr5 8979435 8979574 -143557685 + GA-rich Low_complexity Low_complexity 4 132 0 7 653 393 102 0 0 chr5 8979609 8979668 -143557591 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 7 653 975 136 7 7 chr5 8979681 8979829 -143557430 - B1_Mus1 SINE Alu 0 148 1 7 653 1068 150 11 11 chr5 8979961 8980136 -143557123 + B2_Mm2 SINE B2 3 177 -18 7 653 810 294 31 48 chr5 8980587 8980877 -143556382 + B4A SINE B4 2 286 -6 7 653 353 173 49 0 chr5 8981089 8981170 -143556089 + L1MC5 LINE L1 7705 7789 -172 7 653 339 25 0 0 chr5 8982090 8982130 -143555129 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 653 465 158 16 62 chr5 8982147 8982275 -143554984 + Lx9 LINE L1 7521 7642 -2 7 653 1150 249 192 23 chr5 8982295 8982518 -143554741 + Lx8 LINE L1 6129 6366 -1107 7 653 2272 156 74 10 chr5 8982518 8982912 -143554347 + MTD LTR MaLR 1 419 0 7 653 1150 249 192 23 chr5 8982912 8983209 -143554050 + Lx8 LINE L1 6367 6737 -736 7 653 819 185 20 0 chr5 8983268 8983419 -143553840 + ORR1C2 LTR MaLR 230 383 -1 7 653 29 60 0 0 chr5 8983864 8983914 -143553345 + AT_rich Low_complexity Low_complexity 1 50 0 7 653 507 300 107 31 chr5 8983957 8984218 -143553041 + L1MA6 LINE L1 6003 6283 -17 7 653 1119 56 35 7 chr5 8984520 8984664 -143552595 + B1_Mur4 SINE Alu 1 148 -2 7 653 890 157 11 11 chr5 8984668 8984842 -143552417 + Lx2B LINE L1 6822 6995 -5 7 653 232 302 9 135 chr5 8984973 8985084 -143552175 + 5S rRNA rRNA 9 105 -16 7 653 216 0 0 0 chr5 8985966 8985990 -143551269 + (TTGG)n Simple_repeat Simple_repeat 2 25 0 7 653 414 265 41 0 chr5 8985990 8986088 -143551171 - PB1D10 SINE Alu -9 108 7 7 653 195 129 0 0 chr5 8986146 8986177 -143551082 + (T)n Simple_repeat Simple_repeat 1 31 0 7 653 269 85 0 21 chr5 8986177 8986225 -143551034 - B1_Mus2 SINE Alu 0 147 101 7 653 237 135 0 0 chr5 8986371 8986423 -143550836 + (A)n Simple_repeat Simple_repeat 1 52 0 7 653 2869 28 65 0 chr5 8986960 8987285 -143549974 + ORR1A1 LTR MaLR 1 346 0 7 653 182 37 0 36 chr5 8988579 8988607 -143548652 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 7 653 199 354 124 0 chr5 8989327 8989440 -143547819 + MER5A DNA MER1_type 27 153 -36 7 653 896 84 0 8 chr5 8989847 8989979 -143547280 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 7 653 233 237 16 33 chr5 8990557 8990618 -143546641 + HAL1 LINE L1 29 88 -2419 7 653 668 215 39 55 chr5 8990631 8990813 -143546446 + B2_Mm2 SINE B2 1 179 -16 7 653 214 234 92 15 chr5 8990818 8990883 -143546376 + PB1D10 SINE Alu 30 99 -18 7 653 275 263 50 20 chr5 8991286 8991387 -143545872 + L1M4 LINE L1 5784 5887 -287 7 653 275 245 119 28 chr5 8991530 8991639 -143545620 + L1MA5 LINE L1 6137 6255 -45 7 653 207 0 0 0 chr5 8991651 8991674 -143545585 + (CG)n Simple_repeat Simple_repeat 1 23 0 7 653 378 0 0 0 chr5 8991674 8991715 -143545544 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 653 689 289 124 18 chr5 8991717 8992048 -143545211 + Lx8 LINE L1 7012 7377 -96 7 653 236 226 0 46 chr5 8992364 8992429 -143544830 + GA-rich Low_complexity Low_complexity 5 66 0 7 653 1232 155 46 14 chr5 8992612 8992828 -143544431 + URR1B DNA MER1_type 3 225 0 7 653 1220 75 0 0 chr5 8992884 8993030 -143544229 + B1_Mus2 SINE Alu 2 147 0 7 653 234 0 0 0 chr5 8993030 8993056 -143544203 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 7 653 1316 14 0 20 chr5 8994428 8994578 -143542681 + B1_Mus2 SINE Alu 1 147 0 7 653 677 262 7 7 chr5 8995207 8995349 -143541910 - RSINE1 SINE B4 -22 143 2 7 653 494 213 38 30 chr5 8995380 8995511 -143541748 - B1_Mur1 SINE Alu -17 132 1 7 653 207 0 0 0 chr5 8995743 8995766 -143541493 + (A)n Simple_repeat Simple_repeat 1 23 0 7 653 600 320 78 23 chr5 8995908 8996164 -143541095 + MLT1E2 LTR MaLR 358 627 0 7 653 252 0 0 0 chr5 8998292 8998320 -143538939 + (T)n Simple_repeat Simple_repeat 1 28 0 7 653 1000 104 12 238 chr5 8998868 8999108 -143538151 + B2_Mm2 SINE B2 2 187 -8 7 653 1810 186 26 9 chr5 8999154 8999501 -143537758 - RLTR28 LTR ERVL -171 353 1 7 653 2482 124 81 16 chr5 8999553 8999997 -143537262 - RLTR13D1 LTR ERVK 0 806 334 7 653 859 236 54 67 chr5 9000002 9000455 -143536804 - RLTR13B1 LTR ERVK -408 447 1 1 653 258 224 0 49 chr5 9000956 9001017 -143536242 - L1MB7 LINE L1 -11 6173 6116 2 653 29 0 0 0 chr5 9001239 9001268 -143535991 + AT_rich Low_complexity Low_complexity 1 29 0 3 653 741 151 128 20 chr5 9001269 9001408 -143535851 - RLTR20D LTR ERVK 0 568 414 4 653 381 195 13 0 chr5 9001408 9001485 -143535774 + ORR1A2 LTR MaLR 1 78 -249 5 653 993 183 297 3 chr5 9001574 9001864 -143535395 - MTD LTR MaLR -44 375 1 6 653 704 266 83 53 chr5 9001869 9002207 -143535052 - L1MB7 LINE L1 -113 6071 5724 2 653 854 262 75 46 chr5 9002242 9002447 -143534812 - B4 SINE B4 -1 291 79 7 653 180 0 0 0 chr5 9002447 9002467 -143534792 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 653 854 262 75 46 chr5 9002467 9002541 -143534718 - B4 SINE B4 -214 78 5 7 653 429 248 0 62 chr5 9002542 9002654 -143534605 - ID_B1 SINE B4 -1 223 119 9 653 359 314 112 43 chr5 9002710 9003059 -143534200 - L1MB7 LINE L1 -493 5691 5319 2 653 428 202 0 11 chr5 9003502 9003597 -143533662 - L1MB7 LINE L1 -876 5270 5177 2 653 1881 201 8 19 chr5 9003600 9003976 -143533283 + ORR1D1 LTR MaLR 2 373 -1 1 653 369 0 0 0 chr5 9004118 9004159 -143533100 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 653 384 282 237 0 chr5 9004167 9004413 -143532846 - L1MB7 LINE L1 -1186 4960 4657 2 653 404 283 30 48 chr5 9004784 9004951 -143532308 + RNLTR23 LTR ERVK 479 642 0 1 653 1139 195 25 43 chr5 9005007 9005286 -143531973 + RLTR46 LTR ERVK 42 315 -5 1 653 385 314 8 25 chr5 9005782 9005903 -143531356 - PB1 SINE Alu 0 127 9 1 653 1349 209 63 31 chr5 9006185 9006502 -143530757 + ORR1C2 LTR MaLR 1 327 -57 1 653 599 213 62 8 chr5 9006502 9006630 -143530629 + B1_Mus2 SINE Alu 1 135 -12 1 653 1929 150 65 8 chr5 9006640 9006996 -143530263 + RLTR9D LTR ERVK 1 376 -27 1 653 350 151 96 0 chr5 9007014 9007087 -143530172 + ORR1C2 LTR MaLR 305 384 0 1 653 917 71 0 0 chr5 9007869 9007996 -143529263 + B1_Mus2 SINE Alu 21 147 0 1 653 243 0 0 0 chr5 9008014 9008041 -143529218 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1 653 326 349 45 98 chr5 9008107 9008444 -143528815 - ORR1E LTR MaLR -5 354 36 2 653 207 0 0 0 chr5 9008546 9008569 -143528690 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 653 1125 51 0 7 chr5 9008569 9008708 -143528551 - B1_Mm SINE Alu -9 138 1 2 653 2195 194 39 10 chr5 9008731 9009220 -143528039 - RLTR11A2 LTR ERVK -24 503 1 2 653 1629 139 136 3 chr5 9009693 9010010 -143527249 - ORR1B2 LTR MaLR -8 359 1 2 653 1147 100 0 16 chr5 9010062 9010245 -143527014 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 653 306 0 0 0 chr5 9011997 9012031 -143525228 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 653 323 270 11 11 chr5 9012047 9012137 -143525122 - Lx8 LINE L1 -198 7275 7186 2 653 472 198 218 2 chr5 9012454 9012602 -143524657 - L1_Rod LINE L1 -377 5500 5295 2 653 415 131 14 62 chr5 9012607 9012753 -143524506 + CT-rich Low_complexity Low_complexity 3 141 0 2 653 2753 190 28 103 chr5 9012754 9013510 -143523749 - L1_Rod LINE L1 -559 5288 4590 2 653 4430 169 70 18 chr5 9013503 9014268 -143522991 + Lx9 LINE L1 6699 7478 -166 3 653 3310 43 5 2 chr5 9014268 9014663 -143522596 - MTA_Mm LTR MaLR 0 396 1 3 653 4430 169 70 18 chr5 9014663 9014792 -143522467 + Lx9 LINE L1 7479 7640 -4 3 653 492 233 34 17 chr5 9015010 9015115 -143522144 + PB1D7 SINE Alu 1 108 -12 3 653 1167 90 0 0 chr5 9015115 9015281 -143521978 + (GGAGA)n Simple_repeat Simple_repeat 5 170 0 3 653 492 233 34 17 chr5 9015281 9015293 -143521966 + PB1D7 SINE Alu 109 120 0 3 653 367 352 70 29 chr5 9015330 9015643 -143521616 - ORR1E LTR MaLR -28 331 6 3 653 181 102 20 39 chr5 9016081 9016132 -143521127 + T-rich Low_complexity Low_complexity 3 52 0 3 653 790 74 107 0 chr5 9016132 9016254 -143521005 - B1_Mus1 SINE Alu 0 148 14 3 653 447 294 94 89 chr5 9016351 9016414 -143520845 - L1M2 LINE L1 -2730 3413 3356 3 653 926 31 137 23 chr5 9016414 9016545 -143520714 + B1_Mus2 SINE Alu 2 147 0 3 653 447 294 94 89 chr5 9016545 9016929 -143520330 - L1M2 LINE L1 -2788 3355 2964 3 653 180 0 0 0 chr5 9017132 9017152 -143520107 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 653 347 126 14 0 chr5 9017169 9017234 -143520025 - B2_Mm2 SINE B2 -82 116 46 4 653 1217 124 6 0 chr5 9017299 9017476 -143519783 - B2_Mm1t SINE B2 -14 179 2 4 653 500 270 106 49 chr5 9017567 9017832 -143519427 - B4A SINE B4 -8 284 5 4 653 246 328 129 65 chr5 9018076 9018200 -143519059 + B1F1 SINE Alu 8 139 -10 4 653 300 309 31 10 chr5 9018201 9018299 -143518960 + ID_B1 SINE B4 77 176 -48 4 653 350 302 0 19 chr5 9018212 9018320 -143518939 + PB1D10 SINE Alu 10 115 -2 4 653 180 0 0 0 chr5 9018534 9018554 -143518705 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 4 653 383 263 42 50 chr5 9018554 9018664 -143518595 - PB1D7 SINE Alu -8 112 1 4 653 588 95 0 0 chr5 9019353 9019437 -143517822 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 653 34079 61 36 2 chr5 9019437 9022490 -143514769 - L1Md_F2 LINE L1 -13 6569 3482 4 653 2451 108 74 88 chr5 9022490 9022979 -143514280 + RLTR45 LTR ERVK 1 482 0 5 653 34079 72 33 2 chr5 9022979 9025846 -143511413 - L1Md_F2 LINE L1 -2402 3481 453 4 653 9712 66 2 0 chr5 9025845 9027990 -143509269 - L1Md_F LINE L1 -3363 2520 371 5 653 447 106 0 0 chr5 9028167 9028233 -143509026 + (TCC)n Simple_repeat Simple_repeat 1 66 0 5 653 238 227 0 29 chr5 9028496 9028564 -143508695 + CT-rich Low_complexity Low_complexity 2 67 0 5 653 1001 78 41 28 chr5 9028904 9028917 -143508342 - B1_Mus1 SINE Alu 0 148 139 5 653 368 55 0 18 chr5 9028917 9028973 -143508286 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 5 653 1001 78 41 28 chr5 9028973 9029104 -143508155 - B1_Mus1 SINE Alu -10 138 2 5 653 1110 98 109 6 chr5 9029156 9029331 -143507928 - B2_Mm2 SINE B2 -1 194 2 5 653 327 328 34 17 chr5 9029342 9029460 -143507799 - PB1 SINE Alu -7 120 1 5 653 3104 59 10 10 chr5 9029588 9029984 -143507275 - MTA_Mm LTR MaLR 0 396 1 5 653 260 0 57 0 chr5 9030232 9030267 -143506992 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 5 653 23 0 0 0 chr5 9030280 9030303 -143506956 + AT_rich Low_complexity Low_complexity 1 23 0 6 653 510 79 0 0 chr5 9030328 9030404 -143506855 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 653 642 89 0 0 chr5 9030671 9030761 -143506498 + (GAAA)n Simple_repeat Simple_repeat 1 90 0 6 653 1749 97 40 37 chr5 9030868 9031167 -143506092 + RLTR9B LTR ERVK 1 300 -137 6 653 1105 185 24 36 chr5 9031158 9031405 -143505854 + ORR1C1-int LTR MaLR 1266 1509 0 6 653 1975 138 37 102 chr5 9031405 9031809 -143505450 + ORR1C1 LTR MaLR 1 378 0 6 653 381 22 0 0 chr5 9031817 9031863 -143505396 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 653 711 159 0 64 chr5 9031867 9032008 -143505251 - B1_Mur4 SINE Alu -7 143 12 6 653 663 197 0 8 chr5 9032044 9032162 -143505097 + B1_Mus2 SINE Alu 1 117 -30 6 653 431 294 65 35 chr5 9032711 9032880 -143504379 + MIRb SINE MIR 19 192 -76 6 653 1640 32 0 0 chr5 9033265 9033451 -143503808 - B2_Mm1a SINE B2 -6 187 2 6 653 1208 22 0 0 chr5 9033570 9033707 -143503552 + B1_Mus2 SINE Alu 1 137 -10 7 653 396 0 0 0 chr5 9033707 9033751 -143503508 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7 653 452 307 52 38 chr5 9034341 9034608 -143502651 - L1M5 LINE L1 -2368 3778 3508 7 653 298 360 109 21 chr5 9034828 9035021 -143502238 - L1MD2 LINE L1 -231 6128 5919 7 653 2129 245 105 26 chr5 9035019 9035910 -143501349 + Lx7 LINE L1 6412 7397 -299 7 653 1644 42 0 0 chr5 9036166 9036359 -143500900 + B2_Mm1a SINE B2 1 193 0 7 653 1335 51 0 6 chr5 9036519 9036696 -143500563 - L1Md_F3 LINE L1 0 6584 6409 7 653 227 309 103 27 chr5 9036838 9037061 -143500198 - L1MD LINE L1 -945 5201 4962 7 653 226 245 0 19 chr5 9037078 9037132 -143500127 + CT-rich Low_complexity Low_complexity 3 55 0 7 653 360 0 0 0 chr5 9037959 9037999 -143499260 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 653 270 0 0 0 chr5 9037999 9038028 -143499231 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 653 423 297 0 0 chr5 9038141 9038242 -143499017 + MTEa LTR MaLR 1 101 -278 8 653 330 317 102 19 chr5 9038349 9038555 -143498704 + MT2A LTR ERVL 311 533 0 8 653 25 0 0 0 chr5 9038558 9038583 -143498676 + AT_rich Low_complexity Low_complexity 1 25 0 8 653 306 0 0 0 chr5 9038736 9038770 -143498489 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 653 341 227 15 0 chr5 9038794 9038860 -143498399 - ID4_ SINE ID -12 71 5 8 653 360 139 257 0 chr5 9038890 9038991 -143498268 - Lx9 LINE L1 -7 7637 7511 8 653 1116 99 0 0 chr5 9038997 9039321 -143497938 + (CA)n Simple_repeat Simple_repeat 1 324 0 8 653 884 186 13 0 chr5 9039328 9039484 -143497775 - Lx9 LINE L1 -186 7458 7301 8 653 271 222 0 0 chr5 9039695 9039749 -143497510 - L1MB4 LINE L1 -5943 664 611 8 653 373 232 39 39 chr5 9039807 9039910 -143497349 - PB1D9 SINE Alu -12 108 6 8 653 523 260 166 14 chr5 9039928 9040217 -143497042 - L1MB4 LINE L1 -6008 599 267 8 653 1168 64 4 22 chr5 9040991 9041217 -143496042 + (GA)n Simple_repeat Simple_repeat 1 221 0 9 653 266 227 15 15 chr5 9041383 9041450 -143495809 - MLT1B LTR MaLR -80 310 244 9 653 950 252 68 53 chr5 9041808 9042147 -143495112 - MTD LTR MaLR -14 405 62 9 653 510 245 0 41 chr5 9042269 9042414 -143494845 - RMER15 LTR ERVL -141 434 296 9 654 895 227 287 16 chr5 9044116 9044435 -143492824 + MTD LTR MaLR 1 405 -14 9 654 473 192 18 71 chr5 9044799 9044911 -143492348 + Lx9 LINE L1 7292 7397 -247 9 654 459 259 29 7 chr5 9045132 9045268 -143491991 + B1F SINE Alu 6 144 -5 9 654 222 301 0 27 chr5 9045274 9045349 -143491910 + ID4 SINE ID 2 74 -9 9 654 1237 218 44 41 chr5 9045453 9045797 -143491462 - Lx9 LINE L1 -8 7636 7292 9 654 195 42 0 0 chr5 9046389 9046413 -143490846 + (T)n Simple_repeat Simple_repeat 1 24 0 9 654 237 75 25 0 chr5 9046413 9046453 -143490806 - B1_Mus2 SINE Alu 0 147 107 1 654 1220 28 0 14 chr5 9046466 9046612 -143490647 - B1_Mus2 SINE Alu -3 144 1 1 654 315 65 0 0 chr5 9048032 9048078 -143489181 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 654 554 128 206 8 chr5 9048867 9048993 -143488266 + RLTR33 LTR ERVK 1 151 -527 1 654 1422 117 9 32 chr5 9048993 9049214 -143488045 - Lx2 LINE L1 -382 6615 6400 1 654 381 66 0 90 chr5 9049221 9049288 -143487971 + RLTR33 LTR ERVK 155 215 -463 1 654 36092 35 0 0 chr5 9049288 9054929 -143482330 + L1Md_T LINE L1 1 5589 -297 1 654 9194 4 0 0 chr5 9054929 9055925 -143481334 + L1Md_T LINE L1 5590 6585 0 1 654 844 101 0 0 chr5 9055928 9056057 -143481202 + RLTR33 LTR ERVK 187 315 -363 1 654 21 0 0 0 chr5 9056154 9056175 -143481084 + AT_rich Low_complexity Low_complexity 1 21 0 1 654 840 269 45 33 chr5 9056303 9056634 -143480625 - MLT1C LTR MaLR -22 445 111 1 654 3280 51 8 0 chr5 9056686 9057079 -143480180 + MTA_Mm LTR MaLR 1 396 0 1 654 26 30 0 0 chr5 9057085 9057118 -143480141 + AT_rich Low_complexity Low_complexity 1 33 0 1 654 192 77 0 0 chr5 9057259 9057285 -143479974 + (GAA)n Simple_repeat Simple_repeat 3 28 0 1 654 1185 211 165 12 chr5 9057319 9057646 -143479613 + MTD LTR MaLR 22 398 -21 1 654 308 298 31 31 chr5 9057875 9057972 -143479287 - B1_Mur2 SINE Alu -52 97 1 1 654 448 206 0 0 chr5 9058129 9058226 -143479033 - L1MA5 LINE L1 -2 6298 6202 1 654 910 169 0 0 chr5 9058399 9058541 -143478718 - B1_Mur4 SINE Alu -6 144 3 1 654 315 71 0 0 chr5 9058726 9058768 -143478491 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 654 621 250 0 33 chr5 9058819 9058972 -143478287 + RSINE1 SINE B4 5 152 -13 1 654 315 0 0 0 chr5 9058973 9059008 -143478251 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 654 557 342 23 26 chr5 9059824 9060130 -143477129 + Charlie8 DNA MER1_type 1644 1948 -480 1 654 1042 16 0 0 chr5 9060723 9060852 -143476407 + B1_Mus1 SINE Alu 8 136 -12 1 654 315 0 0 0 chr5 9060854 9060889 -143476370 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 654 233 244 0 60 chr5 9062528 9062611 -143474648 - Lx8 LINE L1 -3 7470 7393 1 654 1259 181 78 91 chr5 9062626 9062756 -143474503 + MT2A LTR ERVL 1 118 -415 1 654 1002 147 55 40 chr5 9062756 9062955 -143474304 - L1Md_F2 LINE L1 -1 6581 6380 1 654 1259 209 60 81 chr5 9062955 9063226 -143474033 + MT2A LTR ERVL 119 525 -76 1 654 423 0 0 0 chr5 9063229 9063276 -143473983 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 1 654 3154 174 46 11 chr5 9063328 9063939 -143473320 - Lx5 LINE L1 -662 6388 5757 1 654 3950 170 153 45 chr5 9063941 9064055 -143473204 + RLTR25A LTR ERVK 1 123 -980 1 654 429 20 0 0 chr5 9064055 9064105 -143473154 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 654 3950 170 153 45 chr5 9064105 9064986 -143472273 + RLTR25A LTR ERVK 124 1103 0 1 654 8996 144 111 75 chr5 9064986 9065148 -143472111 - Lx5 LINE L1 -150 5727 5558 1 654 257 83 0 0 chr5 9065148 9065184 -143472075 - U2 snRNA snRNA -152 36 1 1 654 8996 144 111 75 chr5 9065184 9067071 -143470188 - Lx5 LINE L1 -150 5557 3567 1 654 8315 145 33 32 chr5 9067071 9067905 -143469354 - Lx5 LINE L1 -2699 3187 2050 1 654 390 74 0 0 chr5 9067905 9067959 -143469300 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 654 8315 159 33 11 chr5 9067959 9068761 -143468498 - Lx5 LINE L1 -3828 2049 1241 1 654 2773 143 109 79 chr5 9069376 9069974 -143467285 + RLTR18 LTR ERVK 1 616 0 1 654 1170 200 88 0 chr5 9070088 9070338 -143466921 + ORR1C1 LTR MaLR 107 378 0 1 654 737 253 31 126 chr5 9070889 9071206 -143466053 + MTEa LTR MaLR 84 370 -9 1 654 728 238 76 8 chr5 9071284 9071534 -143465725 - L1MA6 LINE L1 -431 5869 5603 1 654 936 257 0 0 chr5 9071547 9071753 -143465506 - B3 SINE B2 -8 208 3 1 654 2434 92 0 24 chr5 9071774 9072109 -143465150 - ORR1A2 LTR MaLR 0 327 1 1 654 378 270 99 0 chr5 9073121 9073232 -143464027 - PB1 SINE Alu 0 127 6 1 654 311 294 79 0 chr5 9073889 9074015 -143463244 - L1M3e LINE L1 -6686 344 209 1 654 226 235 121 24 chr5 9074355 9074438 -143462821 - L1MEd LINE L1 -5467 652 562 1 654 468 0 0 0 chr5 9074525 9074577 -143462682 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1 654 1834 172 24 0 chr5 9075851 9076188 -143461071 - ORR1C1 LTR MaLR -2 376 32 1 654 1118 260 82 15 chr5 9076334 9076677 -143460582 + MTE2b LTR MaLR 3 368 -11 1 654 263 225 32 43 chr5 9076777 9076870 -143460389 - MIR SINE MIR 0 262 171 1 654 761 283 204 25 chr5 9077217 9077704 -143459555 + L1MA5 LINE L1 5283 5931 -369 1 654 351 0 0 0 chr5 9077992 9078031 -143459228 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 654 696 169 13 7 chr5 9078206 9078361 -143458898 + (TA)n Simple_repeat Simple_repeat 1 156 0 1 654 321 224 15 0 chr5 9078431 9078498 -143458761 - RSINE1 SINE B4 -89 76 9 1 654 306 100 0 57 chr5 9078629 9078671 -143458588 + HAL1-3A_ME LINE L1 1963 2003 -855 1 654 591 112 0 0 chr5 9078671 9078760 -143458499 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 654 351 292 48 30 chr5 9080355 9080521 -143456738 + RMER16-int LTR ERVK 4864 5032 -374 1 654 1299 119 38 0 chr5 9080607 9080792 -143456467 - B2_Mm2 SINE B2 -3 192 1 1 654 308 258 43 72 chr5 9081120 9081258 -143456001 + IAP-d-int LTR ERVK 6398 6531 -11 1 654 900 255 128 16 chr5 9081825 9082144 -143455115 + MER31A LTR ERV1 121 475 -10 1 654 232 257 41 41 chr5 9082173 9082246 -143455013 - ID4_ SINE ID -9 74 2 1 654 219 167 0 0 chr5 9082615 9082657 -143454602 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 654 522 248 9 17 chr5 9082661 9082810 -143454449 - B3A SINE B2 -13 203 57 1 654 1331 231 10 7 chr5 9082834 9083139 -143454120 - RLTR18B LTR ERVK -5 507 202 1 654 975 244 9 4 chr5 9083176 9083402 -143453857 - RLTR18B LTR ERVK -285 227 1 1 654 290 26 26 0 chr5 9083678 9083717 -143453542 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 654 718 303 55 29 chr5 9083725 9084000 -143453259 - B4A SINE B4 -6 286 5 1 654 554 245 156 15 chr5 9084054 9084253 -143453006 - Lx8 LINE L1 -356 7117 6891 1 654 216 111 0 0 chr5 9085028 9085064 -143452195 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 654 3053 38 0 29 chr5 9086254 9086630 -143450629 + RLTR10B2 LTR ERVK 1 365 0 1 654 939 201 72 14 chr5 9086664 9086871 -143450388 + ID_B1 SINE B4 6 224 0 1 654 360 99 0 40 chr5 9086873 9086947 -143450312 + (CCA)n Simple_repeat Simple_repeat 1 71 0 1 654 723 270 38 66 chr5 9087224 9087513 -143449746 - MTD LTR MaLR 0 419 139 1 654 1559 154 101 88 chr5 9087705 9088082 -143449177 + RLTR41 LTR ERV1 62 443 -3 1 654 695 294 5 28 chr5 9088346 9088563 -143448696 - MTD LTR MaLR -190 229 18 1 654 235 210 145 0 chr5 9089107 9089169 -143448090 + RMER5 LTR ERV1 13 83 -451 1 654 1943 206 45 41 chr5 9089345 9089836 -143447423 + RMER5 LTR ERV1 34 526 -8 1 654 258 56 0 0 chr5 9089843 9089879 -143447380 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 1 654 223 316 0 0 chr5 9090329 9090386 -143446873 + (TGG)n Simple_repeat Simple_repeat 2 58 0 1 654 507 277 52 25 chr5 9090722 9090954 -143446305 - L1MA4 LINE L1 -666 5901 5695 1 654 277 232 16 14 chr5 9091242 9091334 -143445925 + ID2 SINE ID 10 105 -47 1 654 581 176 13 155 chr5 9091355 9091510 -143445749 + ORR1C2 LTR MaLR 9 141 -233 1 654 503 214 120 0 chr5 9091542 9091659 -143445600 - B1_Mus2 SINE Alu -8 139 9 1 654 969 174 97 9 chr5 9091669 9091895 -143445364 + ORR1C2 LTR MaLR 139 384 0 1 654 296 279 95 39 chr5 9092593 9092772 -143444487 + RMER15 LTR ERVL 380 568 -7 1 654 6065 123 54 55 chr5 9093968 9095108 -143442151 + RLTR19-int LTR ERVK 3265 4403 -1734 1 654 756 300 85 12 chr5 9095334 9095815 -143441444 + RLTR19-int LTR ERVK 4472 4987 -419 1 654 1599 32 16 0 chr5 9095824 9096013 -143441246 + B2_Mm1a SINE B2 2 193 0 1 654 269 231 69 100 chr5 9096424 9096554 -143440705 + IAP-d-int LTR ERVK 6400 6525 -17 1 654 6499 56 6 30 chr5 9096793 9097635 -143439624 + RLTR13B2 LTR ERVK 1 822 0 1 654 488 280 0 0 chr5 9097960 9098078 -143439181 - B1_Mur2 SINE Alu -1 148 31 1 654 243 339 44 9 chr5 9098111 9098224 -143439035 - MIRb SINE MIR -132 136 20 1 654 1791 136 161 3 chr5 9098412 9098729 -143438530 - ORR1B2 LTR MaLR 0 367 1 1 654 616 258 15 90 chr5 9098866 9099066 -143438193 + B3A SINE B2 5 189 -9 1 654 447 307 102 0 chr5 9099197 9099402 -143437857 + Ricksha_0 DNA MuDR 424 649 -1084 1 654 364 214 182 30 chr5 9099416 9099614 -143437645 + Ricksha_0 DNA MuDR 1498 1723 -3 1 654 300 242 11 32 chr5 9099535 9099629 -143437630 - Ricksha_0 DNA MuDR -1615 118 27 1 654 260 210 4 35 chr5 9099712 9099790 -143437469 - PB1D10 SINE Alu 0 120 48 1 654 21 0 0 0 chr5 9100830 9100851 -143436408 + GC_rich Low_complexity Low_complexity 1 21 0 1 654 23 0 0 0 chr5 9100981 9101004 -143436255 + GC_rich Low_complexity Low_complexity 1 23 0 1 654 31 0 0 0 chr5 9101050 9101081 -143436178 + GC_rich Low_complexity Low_complexity 1 31 0 1 654 349 288 19 25 chr5 9102780 9102904 -143434355 + PB1 SINE Alu 2 126 -1 1 654 1697 31 0 0 chr5 9103111 9103303 -143433956 - B2_Mm1a SINE B2 0 193 2 1 654 459 194 40 10 chr5 9104569 9104668 -143432591 + B1F SINE Alu 48 149 0 1 654 299 200 0 32 chr5 9104934 9104996 -143432263 + ID4 SINE ID 15 74 -9 1 654 197 77 0 49 chr5 9105043 9105084 -143432175 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 1 654 686 174 0 7 chr5 9105082 9105221 -143432038 + CT-rich Low_complexity Low_complexity 2 139 0 1 654 216 0 0 0 chr5 9105221 9105245 -143432014 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 654 315 0 0 0 chr5 9105245 9105280 -143431979 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 654 21 0 0 0 chr5 9106577 9106598 -143430661 + AT_rich Low_complexity Low_complexity 1 21 0 1 654 227 275 14 28 chr5 9107041 9107112 -143430147 - RSINE1 SINE B4 -95 70 1 1 654 219 300 29 0 chr5 9107994 9108064 -143429195 - MIRb SINE MIR -149 119 48 1 654 495 157 213 0 chr5 9108425 9108533 -143428726 - B1_Mur2 SINE Alu -12 137 7 1 654 1432 74 11 0 chr5 9109153 9109343 -143427916 + B2_Mm1t SINE B2 2 193 0 2 654 748 231 71 22 chr5 9109618 9109844 -143427415 - MLT1A1 LTR MaLR -1 407 171 2 654 627 200 22 30 chr5 9109943 9110077 -143427182 - B1_Mus1 SINE Alu -3 145 13 2 654 1870 125 161 0 chr5 9110077 9110413 -143426846 - ORR1B1 LTR MaLR 0 394 5 2 654 227 268 47 93 chr5 9110413 9110433 -143426826 - PB1D7 SINE Alu -103 17 1 2 654 452 278 97 7 chr5 9112552 9112697 -143424562 - Tigger7 DNA MER2_type -1890 601 444 2 654 648 282 165 12 chr5 9112771 9113019 -143424240 - Tigger7 DNA MER2_type -2184 307 22 2 654 302 254 93 34 chr5 9113868 9113902 -143423357 - MER5A1 DNA MER1_type -41 125 90 2 654 789 110 0 0 chr5 9113902 9114020 -143423239 + (GA)n Simple_repeat Simple_repeat 2 119 0 2 654 302 254 93 34 chr5 9114020 9114103 -143423156 - MER5A1 DNA MER1_type -77 89 1 2 654 368 333 163 22 chr5 9114597 9114775 -143422484 - B4A SINE B4 -6 286 84 2 654 461 227 53 26 chr5 9114793 9114906 -143422353 - B3A SINE B2 -32 166 51 2 654 445 230 10 39 chr5 9114916 9115020 -143422239 - B4A SINE B4 -191 101 1 2 654 282 236 14 14 chr5 9115768 9115841 -143421418 - ID4 SINE ID -10 73 1 2 654 363 234 63 11 chr5 9117143 9117238 -143420021 - U6 snRNA snRNA -7 100 1 2 654 211 318 45 0 chr5 9117886 9117952 -143419307 + ID4 SINE ID 6 74 -9 2 654 231 61 0 0 chr5 9118807 9118840 -143418419 + (T)n Simple_repeat Simple_repeat 1 33 0 2 654 23 0 0 0 chr5 9119016 9119039 -143418220 + AT_rich Low_complexity Low_complexity 1 23 0 2 654 546 186 194 0 chr5 9120886 9121010 -143416249 + URR1A DNA MER1_type 79 226 0 2 654 289 200 130 26 chr5 9122327 9122404 -143414855 + RSINE1 SINE B4 46 130 -35 2 654 819 244 30 15 chr5 9122966 9123166 -143414093 - B3 SINE B2 -12 204 2 2 654 327 266 139 25 chr5 9123460 9123618 -143413641 - L1MB8 LINE L1 -116 6062 5887 2 654 301 216 0 0 chr5 9125492 9125543 -143411716 - ID4 SINE ID -4 79 29 2 654 21 0 0 0 chr5 9125660 9125681 -143411578 + AT_rich Low_complexity Low_complexity 1 21 0 2 654 384 250 8 70 chr5 9126937 9127066 -143410193 - PB1 SINE Alu -3 124 4 2 654 258 286 36 0 chr5 9127347 9127403 -143409856 - B1_Mus2 SINE Alu -89 58 1 2 654 25 0 0 0 chr5 9128488 9128513 -143408746 + AT_rich Low_complexity Low_complexity 1 25 0 2 654 351 289 89 0 chr5 9128806 9128941 -143408318 + LFSINE_Vert SINE SINE 220 366 -93 2 654 457 331 152 39 chr5 9132882 9133031 -143404228 + L1M5 LINE L1 3146 3300 -2846 2 654 441 0 0 0 chr5 9133031 9133080 -143404179 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 654 457 331 152 39 chr5 9133080 9133437 -143403822 + L1M5 LINE L1 3301 3709 -2437 2 654 45 55 0 0 chr5 9133841 9133914 -143403345 + AT_rich Low_complexity Low_complexity 1 73 0 2 654 316 312 162 9 chr5 9134279 9134489 -143402770 + L1M5 LINE L1 5147 5388 -758 2 654 450 0 0 0 chr5 9134661 9134711 -143402548 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 654 1056 82 0 33 chr5 9136731 9136883 -143400376 + B1_Mus1 SINE Alu 2 148 0 2 654 455 236 45 36 chr5 9137432 9137542 -143399717 + PB1D10 SINE Alu 1 111 -6 2 654 871 144 27 0 chr5 9137559 9137705 -143399554 + B1_Mur4 SINE Alu 1 150 0 2 654 674 288 6 36 chr5 9138439 9138605 -143398654 + RSINE1 SINE B4 5 165 0 2 654 416 192 12 15 chr5 9138688 9138799 -143398460 - L1_Rod LINE L1 -1906 3971 3872 2 654 332 279 86 8 chr5 9138805 9139006 -143398253 + L1MA6 LINE L1 5760 5968 -188 2 654 1199 42 0 0 chr5 9139432 9139575 -143397684 - B1_Mm SINE Alu 0 147 5 2 654 45 40 0 13 chr5 9139661 9139687 -143397572 + AT_rich Low_complexity Low_complexity 1 26 0 2 654 1335 63 17 0 chr5 9139687 9139862 -143397397 + B2_Mm1t SINE B2 2 179 -14 2 654 45 40 0 13 chr5 9139862 9139912 -143397347 + AT_rich Low_complexity Low_complexity 1 50 0 2 654 295 298 170 31 chr5 9140967 9141161 -143396098 - L2 LINE L2 -462 2957 2737 2 654 456 358 161 15 chr5 9141995 9142472 -143394787 - L2 LINE L2 -1904 1515 969 2 654 877 81 80 7 chr5 9142667 9142804 -143394455 + B1_Mus2 SINE Alu 1 147 0 2 654 651 261 58 8 chr5 9142815 9143074 -143394185 - L1M2 LINE L1 -3493 3712 3441 2 654 889 196 183 20 chr5 9143078 9143336 -143393923 + RLTR9B2 LTR ERVK 2 281 -112 2 654 7038 94 59 8 chr5 9143336 9144450 -143392809 - L1_Mm LINE L1 -673 5210 4040 2 654 6718 49 9 9 chr5 9144438 9145323 -143391936 + L1_Mus1 LINE L1 5672 6556 -11 2 654 1048 156 20 8 chr5 9145323 9145521 -143391738 + RLTR9B2 LTR ERVK 168 420 0 2 654 317 307 158 12 chr5 9145561 9145726 -143391533 - L1M2 LINE L1 -3820 3385 3197 2 654 680 149 17 26 chr5 9146045 9146162 -143391097 - B1_Mur3 SINE Alu 0 149 34 2 654 247 283 125 68 chr5 9146226 9146945 -143390314 - L1M2 LINE L1 -4635 2574 1774 2 654 200 227 136 0 chr5 9148541 9148607 -143388652 + MIR SINE MIR 109 183 -79 2 654 259 304 200 14 chr5 9149326 9149546 -143387713 - L2c LINE L2 -4 3383 3123 2 654 1094 254 33 57 chr5 9150736 9151037 -143386222 + MTEa LTR MaLR 1 294 -85 2 654 237 324 71 36 chr5 9150976 9151088 -143386171 - ID_B1 SINE B4 -106 118 3 2 654 625 216 156 21 chr5 9152888 9153069 -143384190 + B3 SINE B2 30 213 -3 2 654 194 275 362 17 chr5 9153069 9153231 -143384028 - L2c LINE L2 -1215 2204 1980 2 654 1248 100 0 11 chr5 9153231 9153413 -143383846 + B2_Mm2 SINE B2 2 181 -14 2 654 194 275 362 17 chr5 9153413 9153424 -143383835 - L2c LINE L2 -1440 1979 1971 2 654 452 83 160 0 chr5 9153426 9153522 -143383737 + B2_Mm2 SINE B2 47 179 -14 2 654 1243 41 0 0 chr5 9154015 9154162 -143383097 + B1_Mus2 SINE Alu 1 147 0 2 654 391 320 0 0 chr5 9154289 9154389 -143382870 - PB1D10 SINE Alu -11 106 7 2 654 1102 114 12 0 chr5 9154830 9154997 -143382262 + B2_Mm1t SINE B2 2 170 -23 2 654 377 102 282 9 chr5 9155087 9155196 -143382063 + B2_Mm2 SINE B2 46 189 -6 2 654 419 70 0 27 chr5 9155279 9155353 -143381906 - L1Md_F2 LINE L1 0 6582 6511 2 654 506 186 82 0 chr5 9155353 9155450 -143381809 + B1_Mur4 SINE Alu 12 116 -34 2 654 1145 82 105 0 chr5 9155637 9155808 -143381451 - B2_Mm2 SINE B2 -5 190 2 2 654 433 293 0 65 chr5 9155812 9155936 -143381323 - PB1D10 SINE Alu -1 116 1 2 654 1275 83 0 0 chr5 9156004 9156172 -143381087 - B2_Mm2 SINE B2 -26 169 2 2 654 1240 215 41 95 chr5 9159158 9159323 -143377936 + RLTR40 LTR ERVK 16 177 -640 2 654 1316 86 27 0 chr5 9159323 9159510 -143377749 + B2_Mm1t SINE B2 2 193 0 2 654 1240 217 310 86 chr5 9159510 9159853 -143377406 + RLTR40 LTR ERVK 178 592 -225 2 654 252 0 0 0 chr5 9160911 9160939 -143376320 + (A)n Simple_repeat Simple_repeat 1 28 0 2 654 23 0 0 0 chr5 9161267 9161290 -143375969 + GC_rich Low_complexity Low_complexity 1 23 0 2 654 21 57 0 0 chr5 9161442 9161477 -143375782 + GC_rich Low_complexity Low_complexity 1 35 0 2 654 24 96 0 0 chr5 9161753 9161826 -143375433 + GC_rich Low_complexity Low_complexity 1 73 0 2 654 655 293 162 31 chr5 9162197 9162739 -143374520 - Lx8 LINE L1 -9 7464 6852 2 654 298 310 53 9 chr5 9162786 9162900 -143374359 + PB1D7 SINE Alu 2 120 0 2 654 241 295 44 76 chr5 9163007 9163165 -143374094 + Lx7 LINE L1 7147 7299 -397 2 654 438 244 21 6 chr5 9163173 9163326 -143373933 + L1MC1 LINE L1 5690 5843 -341 2 654 1562 212 72 26 chr5 9163386 9163734 -143373525 - ORR1D1 LTR MaLR -8 366 3 2 654 446 274 125 21 chr5 9163738 9164018 -143373241 + L1MC1 LINE L1 5926 6234 -99 2 654 319 111 0 0 chr5 9164366 9164411 -143372848 + B2_Mm2 SINE B2 1 45 -150 2 654 294 50 0 0 chr5 9164412 9164452 -143372807 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 654 476 340 39 7 chr5 9164550 9164704 -143372555 - MER21B LTR ERV1 -431 432 274 2 654 1133 82 0 0 chr5 9165451 9165598 -143371661 + B1_Mus2 SINE Alu 1 147 0 2 654 3867 157 18 141 chr5 9166189 9167121 -143370138 - RLTR25B LTR ERVK -210 818 1 2 654 265 224 12 84 chr5 9167628 9167711 -143369548 - MT2B2 LTR ERVL -312 272 196 2 654 389 295 9 0 chr5 9167641 9167746 -143369513 - PB1D10 SINE Alu -8 109 4 2 654 774 255 36 57 chr5 9168778 9169057 -143368202 - L1MB1 LINE L1 -87 6081 5809 2 654 425 70 0 0 chr5 9169062 9169119 -143368140 + U2 snRNA snRNA 1 57 -131 2 654 1660 86 21 8 chr5 9169328 9169599 -143367660 - L1Md_F2 LINE L1 0 6582 6326 2 654 358 366 16 14 chr5 9170061 9170208 -143367051 - L2a LINE L2 0 3426 3235 2 654 1007 271 86 110 chr5 9170220 9170298 -143366961 - RLTR20D LTR ERVK -12 566 478 2 654 414 0 0 0 chr5 9170298 9170344 -143366915 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 654 1227 241 67 76 chr5 9170344 9170845 -143366414 - RLTR20D LTR ERVK -101 477 1 2 654 432 91 0 0 chr5 9171173 9171239 -143366020 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 654 720 292 59 79 chr5 9171254 9171544 -143365715 - B4A SINE B4 -3 289 6 2 654 300 27 0 0 chr5 9171767 9171804 -143365455 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 654 761 247 186 14 chr5 9172447 9172796 -143364463 + L1MA5 LINE L1 5524 5932 -368 2 654 491 181 0 19 chr5 9172814 9172921 -143364338 + (TATG)n Simple_repeat Simple_repeat 4 108 0 2 654 259 331 16 24 chr5 9174062 9174186 -143363073 + Lx7 LINE L1 7197 7319 -377 2 654 244 238 49 10 chr5 9174260 9174362 -143362897 + Lx8 LINE L1 7339 7444 -29 2 81 14056 67 19 1 chr5 9174681 9177269 -143359990 - L1Md_F2 LINE L1 -2 6580 3950 2 655 475 289 88 28 chr5 9178179 9178428 -143358831 + Lx8 LINE L1 7210 7473 0 2 655 459 242 162 17 chr5 9178998 9179233 -143358026 + B4A SINE B4 9 277 -15 2 655 1227 307 85 20 chr5 9179301 9180016 -143357243 - L1MC3 LINE L1 -55 7730 6969 2 655 1187 35 7 0 chr5 9180028 9180170 -143357089 - B1_Mus2 SINE Alu 0 147 5 2 655 230 151 19 0 chr5 9181388 9181441 -143355818 - Lx6 LINE L1 -49 7411 7358 3 655 2965 55 45 3 chr5 9182455 9182835 -143354424 + MTA_Mm LTR MaLR 1 396 0 3 655 708 185 53 0 chr5 9183348 9183499 -143353760 - Lx9 LINE L1 -768 6876 6718 3 655 1467 237 21 33 chr5 9183491 9183915 -143353344 + Lx9 LINE L1 7207 7625 -19 3 655 1629 135 62 108 chr5 9183916 9183973 -143353286 - ORR1A3 LTR MaLR -1 325 273 3 655 1276 113 11 0 chr5 9183973 9184158 -143353101 - B2_Mm1t SINE B2 -6 187 1 3 655 1629 135 62 108 chr5 9184158 9184441 -143352818 - ORR1A3 LTR MaLR -54 272 1 3 655 26 30 0 0 chr5 9184441 9184474 -143352785 + AT_rich Low_complexity Low_complexity 1 33 0 3 655 817 246 72 38 chr5 9184694 9184956 -143352303 + B4A SINE B4 4 274 -18 3 655 385 326 141 13 chr5 9185373 9185609 -143351650 - MLT2B1 LTR ERVL 0 567 300 3 655 2746 87 64 5 chr5 9185874 9186300 -143350959 + RMER16 LTR ERVK 1 533 0 3 655 304 306 138 29 chr5 9186373 9186511 -143350748 - HAL1-3A_ME LINE L1 -419 2439 2287 3 655 241 289 169 0 chr5 9186530 9186613 -143350646 - PB1D10 SINE Alu -19 98 2 3 655 279 0 0 0 chr5 9187021 9187052 -143350207 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 655 222 91 0 0 chr5 9187358 9187391 -143349868 + (TATATG)n Simple_repeat Simple_repeat 1 33 0 3 655 2747 165 25 23 chr5 9187691 9188218 -143349041 - RLTR12B LTR ERVK 0 528 1 3 655 576 0 0 0 chr5 9188315 9188379 -143348880 + (TTCTC)n Simple_repeat Simple_repeat 5 68 0 3 655 1620 0 0 0 chr5 9188379 9188558 -143348701 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 3 655 292 29 0 0 chr5 9188558 9188592 -143348667 + (CCCCCT)n Simple_repeat Simple_repeat 4 37 0 3 655 805 65 21 35 chr5 9188592 9188736 -143348523 + (TCTCC)n Simple_repeat Simple_repeat 1 142 0 3 655 1299 79 0 0 chr5 9188736 9188913 -143348346 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 3 655 1182 62 0 0 chr5 9188913 9189057 -143348202 - B1_Mus2 SINE Alu -3 144 1 3 655 229 386 17 8 chr5 9189422 9189542 -143347717 + MamRep605 Unknown Unknown 445 565 -311 3 655 37463 30 3 7 chr5 9190703 9196875 -143340384 - L1Md_T LINE L1 0 6582 440 3 655 22 56 0 0 chr5 9197057 9197093 -143340166 + AT_rich Low_complexity Low_complexity 1 36 0 3 655 7912 33 1 4 chr5 9197416 9198810 -143338449 - L1Md_F3 LINE L1 -12 6572 5182 3 655 525 204 20 0 chr5 9199957 9200055 -143337204 - B3A SINE B2 -97 101 2 3 655 378 194 0 0 chr5 9200402 9200469 -143336790 - MTEb LTR MaLR -153 226 160 3 655 331 223 52 26 chr5 9200508 9200623 -143336636 - L1M5 LINE L1 -2262 3884 3767 3 655 3881 82 13 1 chr5 9200924 9201683 -143335576 + L1VL2 LINE L1 481 1247 -2368 3 655 7322 85 16 12 chr5 9201667 9202830 -143334429 + L1VL2 LINE L1 1559 2726 -889 3 655 201 94 0 0 chr5 9203773 9203805 -143333454 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 655 993 132 36 6 chr5 9203921 9204089 -143333170 + B2_Mm1t SINE B2 18 190 -3 3 655 220 320 195 8 chr5 9204275 9204398 -143332861 - L2c LINE L2 -24 3363 3218 3 655 1214 40 0 13 chr5 9204659 9204809 -143332450 - B1_Mus1 SINE Alu 0 148 1 3 655 2757 249 135 16 chr5 9204818 9205809 -143331450 - Lx8 LINE L1 0 7473 6365 3 655 539 315 39 0 chr5 9205818 9205948 -143331311 + RSINE1 SINE B4 3 137 -28 3 655 256 253 24 0 chr5 9205948 9206031 -143331228 + CT-rich Low_complexity Low_complexity 2 86 0 3 655 21 0 0 0 chr5 9206125 9206146 -143331113 + AT_rich Low_complexity Low_complexity 1 21 0 3 655 189 0 0 0 chr5 9206882 9206903 -143330356 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 3 655 219 139 0 0 chr5 9206903 9206939 -143330320 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 3 655 311 274 46 19 chr5 9207046 9207154 -143330105 - PB1D10 SINE Alu -2 115 5 3 655 516 254 67 17 chr5 9207314 9207494 -143329765 - MER5A DNA MER1_type 0 189 1 3 655 269 347 65 18 chr5 9207509 9207679 -143329580 + MIRc SINE MIR 33 210 -58 3 655 1138 82 0 14 chr5 9208107 9208255 -143329004 + B1_Mus2 SINE Alu 2 147 0 3 655 279 0 0 0 chr5 9208348 9208379 -143328880 + (TAA)n Simple_repeat Simple_repeat 3 33 0 3 655 405 263 149 35 chr5 9209975 9210053 -143327206 + Lx8 LINE L1 7221 7299 -174 3 655 387 0 0 0 chr5 9210053 9210096 -143327163 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 655 405 263 149 35 chr5 9210096 9210218 -143327041 + Lx8 LINE L1 7300 7444 -29 3 655 1068 301 28 21 chr5 9210260 9210436 -143326823 - L1MA4 LINE L1 -382 5918 5739 3 655 4763 80 31 92 chr5 9210436 9211236 -143326023 - RMER17A LTR ERVK 0 751 1 3 655 1068 287 71 32 chr5 9211236 9211656 -143325603 - L1MA4 LINE L1 -559 5738 5297 3 655 1027 53 0 0 chr5 9212924 9213055 -143324204 + B1_Mus1 SINE Alu 18 148 0 3 655 207 0 0 0 chr5 9213059 9213082 -143324177 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 655 528 16 0 0 chr5 9213102 9213163 -143324096 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 655 23 33 0 0 chr5 9213783 9213813 -143323446 + AT_rich Low_complexity Low_complexity 1 30 0 3 655 250 343 0 0 chr5 9213888 9213955 -143323304 - B3A SINE B2 -131 67 1 3 655 22 56 0 0 chr5 9214103 9214139 -143323120 + AT_rich Low_complexity Low_complexity 1 36 0 3 655 226 355 142 26 chr5 9214198 9214424 -143322835 + LTR89 LTR ERVL? 382 633 -246 3 655 2035 104 3 78 chr5 9215090 9215434 -143321825 + ORR1A4 LTR MaLR 2 319 -10 3 655 1160 75 23 6 chr5 9215534 9215707 -143321552 - L1Md_F2 LINE L1 0 6582 6407 3 655 1720 59 59 0 chr5 9215707 9215945 -143321314 + L1Md_F2 LINE L1 6021 6272 -310 3 655 524 281 137 78 chr5 9217033 9217326 -143319933 - MLT1A1 LTR MaLR 0 408 99 3 655 211 324 216 43 chr5 9217441 9217557 -143319702 + MIRb SINE MIR 6 144 -124 3 655 397 280 0 36 chr5 9218031 9218142 -143319117 + MLT1C LTR MaLR 6 112 -355 3 655 801 301 42 71 chr5 9218533 9218841 -143318418 + MLT1C LTR MaLR 141 439 -28 3 655 235 247 104 61 chr5 9218932 9219096 -143318163 - MER96B DNA hAT -102 315 145 3 655 641 24 24 0 chr5 9219306 9219388 -143317871 + (TTTTC)n Simple_repeat Simple_repeat 2 85 0 3 655 1178 28 7 0 chr5 9219390 9219531 -143317728 - B1_Mus1 SINE Alu -6 142 1 3 655 195 42 0 0 chr5 9219805 9219829 -143317430 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 655 1109 66 0 0 chr5 9219834 9219971 -143317288 + B1_Mus1 SINE Alu 2 138 -10 3 655 2169 209 43 34 chr5 9219972 9220395 -143316864 + RLTR17 LTR ERVK 244 673 -19 3 655 1907 57 12 4 chr5 9220395 9220643 -143316616 - L1_Mus1 LINE L1 -2 6565 6316 3 655 2169 209 43 34 chr5 9220643 9220664 -143316595 + RLTR17 LTR ERVK 674 692 0 3 655 255 123 0 17 chr5 9220706 9220764 -143316495 + B2_Mm2 SINE B2 138 194 -1 3 655 189 214 0 0 chr5 9220819 9220861 -143316398 + GA-rich Low_complexity Low_complexity 3 44 0 3 655 209 368 0 0 chr5 9221184 9221271 -143315988 + MIR SINE MIR 163 249 -13 3 655 3042 276 73 27 chr5 9221317 9222417 -143314842 - Lx8 LINE L1 -2 7471 6322 3 655 2937 96 5 5 chr5 9222487 9222917 -143314342 + Lx3A LINE L1 6101 6530 -451 3 655 1193 169 146 25 chr5 9222916 9223085 -143314174 + Lx7 LINE L1 7343 7545 -151 3 655 408 40 0 0 chr5 9223085 9223135 -143314124 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 3 655 1193 169 146 25 chr5 9223135 9223281 -143313978 + Lx7 LINE L1 7546 7696 0 3 655 491 69 14 0 chr5 9223700 9223772 -143313487 + (GGGA)n Simple_repeat Simple_repeat 1 73 0 3 655 231 322 0 11 chr5 9224063 9224151 -143313108 + MLT1K LTR MaLR 503 589 -6 3 655 5236 73 23 3 chr5 9224511 9225220 -143312039 - L1_Mus2 LINE L1 0 6566 5844 3 655 5086 184 60 55 chr5 9225222 9226903 -143310356 - RMER3D-int LTR ERVK -620 2222 10 3 655 1782 196 101 42 chr5 9226936 9227361 -143309898 - RLTR17 LTR ERVK -57 635 186 3 655 400 259 104 0 chr5 9227621 9227815 -143309444 - L1M5 LINE L1 -716 5728 5516 3 655 926 284 117 56 chr5 9227872 9228589 -143308670 - L1MA5 LINE L1 -64 6236 5476 3 655 1819 211 62 66 chr5 9228917 9229420 -143307839 + RLTR11A2 LTR ERVK 27 527 0 3 655 255 352 30 30 chr5 9230952 9231084 -143306175 + ERVL-E-int LTR ERVL 864 995 -4672 3 655 502 263 5 48 chr5 9232694 9232882 -143304377 + L1MB1 LINE L1 5431 5610 -558 3 655 521 323 0 0 chr5 9232887 9233017 -143304242 + RSINE1 SINE B4 3 132 -33 3 655 965 249 130 37 chr5 9233064 9233578 -143303681 + L1MB1 LINE L1 5600 6161 -7 3 655 549 223 21 35 chr5 9233599 9233743 -143303516 + B1_Mur1 SINE Alu 1 142 -7 3 655 576 0 0 0 chr5 9233745 9233809 -143303450 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 655 798 242 128 34 chr5 9233846 9234111 -143303148 + B4A SINE B4 3 292 0 3 655 25 31 0 0 chr5 9234245 9234277 -143302982 + AT_rich Low_complexity Low_complexity 1 32 0 3 655 243 61 0 0 chr5 9234580 9234613 -143302646 + (CAA)n Simple_repeat Simple_repeat 2 34 0 3 655 411 185 111 0 chr5 9234741 9234822 -143302437 + MTEb LTR MaLR 4 93 -286 3 655 311 281 21 43 chr5 9234911 9235004 -143302255 - BC1_Mm scRNA scRNA -52 100 10 3 655 427 224 11 23 chr5 9234931 9235018 -143302241 - B4 SINE B4 -206 86 1 3 655 1977 209 97 26 chr5 9235341 9235512 -143301747 - RLTR19 LTR ERVK 0 499 322 3 655 2410 95 3 0 chr5 9235512 9235838 -143301421 - ORR1A2 LTR MaLR 0 327 1 3 655 1977 209 97 26 chr5 9235838 9236132 -143301127 - RLTR19 LTR ERVK -178 321 2 3 655 1247 265 130 62 chr5 9236354 9237212 -143300047 - L1MA4 LINE L1 -371 5929 4954 3 655 1935 194 51 61 chr5 9237212 9237739 -143299520 - RLTR28 LTR ERVL 0 524 3 3 655 1247 261 132 65 chr5 9237739 9237854 -143299405 - L1MA4 LINE L1 -894 4953 4835 3 655 274 258 19 0 chr5 9237847 9237946 -143299313 + L1_Mur3 LINE L1 4483 4591 -1289 3 655 212 159 0 73 chr5 9237946 9238014 -143299245 + A-rich Low_complexity Low_complexity 3 65 0 3 655 358 229 172 33 chr5 9238434 9238556 -143298703 - B1_Mur1 SINE Alu -9 140 2 3 655 375 249 31 30 chr5 9238565 9238693 -143298566 - B3A SINE B2 -5 211 80 3 655 258 32 0 0 chr5 9238899 9238930 -143298329 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 655 542 15 15 0 chr5 9238930 9238996 -143298263 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 655 722 230 0 0 chr5 9239003 9239142 -143298117 - B3A SINE B2 -58 140 2 4 655 329 323 85 59 chr5 9239708 9240179 -143297080 - L1ME3B LINE L1 -304 5936 5454 4 655 2207 200 74 6 chr5 9240306 9240809 -143296450 - Lx5 LINE L1 -5 7045 6509 4 655 1177 35 21 0 chr5 9240914 9241058 -143296201 - B1_Mus1 SINE Alu 0 148 2 4 655 389 153 0 0 chr5 9241074 9241146 -143296113 - Lx6 LINE L1 -2 7458 7387 4 655 772 180 21 7 chr5 9241705 9241845 -143295414 - B1_Mus1 SINE Alu 0 148 7 4 655 279 169 0 0 chr5 9242551 9242580 -143294679 + A-rich Low_complexity Low_complexity 1 29 0 4 655 1142 68 0 26 chr5 9242580 9242732 -143294527 + B1_Mus1 SINE Alu 1 148 0 4 655 279 169 0 0 chr5 9242732 9242785 -143294474 + A-rich Low_complexity Low_complexity 30 82 0 4 655 268 272 119 23 chr5 9242838 9243056 -143294203 - L1ME3B LINE L1 -930 5216 4978 4 655 488 294 52 17 chr5 9243156 9243329 -143293930 - RLTR23 LTR ERV1 0 430 252 4 655 601 180 45 0 chr5 9243610 9243721 -143293538 - B1_Mur4 SINE Alu -34 116 1 4 655 423 322 87 35 chr5 9243730 9244016 -143293243 - L1ME3B LINE L1 -5218 918 618 4 655 247 328 30 0 chr5 9244615 9244682 -143292577 + ID_B1 SINE B4 92 160 -64 4 655 233 320 56 65 chr5 9244682 9244722 -143292537 + B1F2 SINE Alu 11 116 -33 4 655 330 246 0 14 chr5 9244754 9244828 -143292431 + ID4 SINE ID 3 75 -8 4 655 849 142 0 0 chr5 9244828 9244969 -143292290 + (GA)n Simple_repeat Simple_repeat 2 142 0 4 655 195 257 0 0 chr5 9244981 9245055 -143292204 + GA-rich Low_complexity Low_complexity 1 74 0 4 655 618 156 7 15 chr5 9245560 9245697 -143291562 + (TA)n Simple_repeat Simple_repeat 1 136 0 4 655 27 96 0 0 chr5 9245697 9245780 -143291479 + AT_rich Low_complexity Low_complexity 1 83 0 4 655 2715 149 66 2 chr5 9246065 9246550 -143290709 - Lx LINE L1 -5 6649 6134 4 655 974 33 8 0 chr5 9246577 9246699 -143290560 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 4 655 585 365 13 16 chr5 9247830 9248139 -143289120 + Kanga11a DNA Tc2 307 614 -356 4 655 514 272 72 14 chr5 9248135 9248273 -143288986 + RSINE1 SINE B4 20 165 0 4 655 237 340 115 11 chr5 9249193 9249384 -143287875 + MIRb SINE MIR 42 252 -10 4 655 22 0 0 0 chr5 9250356 9250378 -143286881 + AT_rich Low_complexity Low_complexity 1 22 0 4 655 341 292 0 0 chr5 9251434 9251523 -143285736 + ERVL-E-int LTR ERVL 5012 5100 -567 4 655 1065 86 23 139 chr5 9251772 9251988 -143285271 + B2_Mm1t SINE B2 1 191 -2 4 655 276 111 0 0 chr5 9252453 9252498 -143284761 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 4 655 1152 75 0 0 chr5 9252499 9252645 -143284614 - B1_Mus2 SINE Alu -1 146 1 4 655 384 286 232 16 chr5 9252889 9253109 -143284150 - L2a LINE L2 0 3426 3153 4 655 414 0 0 0 chr5 9253109 9253155 -143284104 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 4 655 384 286 232 16 chr5 9253155 9253240 -143284019 - L2a LINE L2 -274 3152 3056 4 655 1325 267 123 52 chr5 9253645 9254206 -143283053 + MT2B LTR ERVL 1 601 0 4 655 273 285 113 50 chr5 9254343 9254502 -143282757 - MIRb SINE MIR -30 238 70 4 655 759 301 106 12 chr5 9254535 9254946 -143282313 + MLT2B2 LTR ERVL 1 554 -8 4 655 388 195 218 0 chr5 9255031 9255118 -143282141 - B1_Mur3 SINE Alu -41 108 3 4 655 252 242 153 71 chr5 9255032 9255130 -143282129 - MT2B LTR ERVL -341 260 155 4 655 22 56 0 0 chr5 9255439 9255475 -143281784 + AT_rich Low_complexity Low_complexity 1 36 0 4 655 732 289 44 23 chr5 9256126 9256516 -143280743 - L1MC1 LINE L1 -204 6129 5732 4 655 512 60 0 0 chr5 9256600 9256667 -143280592 - L1VL2 LINE L1 -5978 357 291 4 655 1363 28 66 17 chr5 9256687 9256868 -143280391 - L1Md_F2 LINE L1 0 6582 6393 4 655 206 79 26 26 chr5 9256880 9256919 -143280340 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 655 7424 156 42 8 chr5 9257023 9258496 -143278763 + Lx5 LINE L1 5517 7049 -1 4 655 1023 181 290 43 chr5 9258633 9258933 -143278326 + ORR1D1 LTR MaLR 1 374 0 4 655 1250 246 97 31 chr5 9259000 9259543 -143277716 + Lx9 LINE L1 5410 6024 -1620 4 655 669 282 153 33 chr5 9259914 9260398 -143276861 + Lx9 LINE L1 7101 7642 -2 4 655 249 33 0 0 chr5 9260643 9260673 -143276586 + (T)n Simple_repeat Simple_repeat 1 30 0 4 655 24 21 0 60 chr5 9261328 9261378 -143275881 + GC_rich Low_complexity Low_complexity 1 47 0 4 655 200 303 126 39 chr5 9261587 9261714 -143275545 + MIR SINE MIR 124 261 -1 4 655 558 204 146 62 chr5 9261822 9262000 -143275259 + B3A SINE B2 1 193 -5 4 655 903 304 34 26 chr5 9262051 9262318 -143274941 + B4A SINE B4 4 272 -20 4 655 459 35 0 0 chr5 9262324 9262381 -143274878 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 655 27 62 0 0 chr5 9262495 9262543 -143274716 + AT_rich Low_complexity Low_complexity 1 48 0 4 655 401 225 227 19 chr5 9262656 9262810 -143274449 + MER57C2 LTR ERV1 1 186 -248 4 655 1019 20 44 8 chr5 9262844 9263095 -143274164 + (TC)n Simple_repeat Simple_repeat 1 260 0 4 655 353 267 159 7 chr5 9263268 9263419 -143273840 + MER57C2 LTR ERV1 235 408 -3 4 655 344 218 30 0 chr5 9264067 9264168 -143273091 + Lx7 LINE L1 7578 7681 -15 4 655 359 283 8 32 chr5 9264569 9264693 -143272566 - Lx8 LINE L1 -379 7094 6974 4 655 403 350 0 0 chr5 9265658 9265795 -143271464 - MIR SINE MIR -7 255 119 4 655 238 222 0 62 chr5 9266024 9266120 -143271139 + C-rich Low_complexity Low_complexity 2 91 0 4 655 771 83 0 0 chr5 9267939 9268047 -143269212 + (TA)n Simple_repeat Simple_repeat 2 109 0 4 655 878 274 5 5 chr5 9268056 9268247 -143269012 - ID_B1 SINE B4 -28 196 6 4 655 1609 46 0 0 chr5 9270462 9270658 -143266601 + L1_Mus1 LINE L1 6372 6567 0 4 655 1919 166 14 36 chr5 9271520 9271882 -143265377 - ORR1B1 LTR MaLR 0 394 41 4 655 243 0 0 0 chr5 9272052 9272079 -143265180 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 655 360 0 0 0 chr5 9272079 9272118 -143265141 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 655 241 325 37 12 chr5 9272264 9272345 -143264914 - MTEa LTR MaLR -15 364 282 4 655 234 368 21 108 chr5 9272966 9273152 -143264107 + MER91A DNA Tip100 27 196 0 4 655 316 304 195 6 chr5 9273547 9273706 -143263553 + MER5A DNA MER1_type 1 189 0 4 655 260 333 104 35 chr5 9274486 9274716 -143262543 + L2a LINE L2 2133 2378 -1041 4 655 25794 35 0 1 chr5 9274717 9278825 -143258434 - L1Md_F2 LINE L1 0 6582 2476 4 655 1254 132 23 9 chr5 9278910 9279124 -143258135 - L1Md_F2 LINE L1 -12 6570 6354 4 655 26 0 0 0 chr5 9279186 9279212 -143258047 + AT_rich Low_complexity Low_complexity 1 26 0 4 655 6922 48 1 7 chr5 9279674 9280572 -143256687 - L1_Mus1 LINE L1 -2 6565 5673 4 655 314 300 130 91 chr5 9280847 9281177 -143256082 - MLT1A0 LTR MaLR -2 363 21 4 655 224 328 97 9 chr5 9281235 9281349 -143255910 + L2a LINE L2 3033 3156 -270 4 655 6738 99 22 12 chr5 9281440 9282468 -143254791 - Lx LINE L1 -6 6648 5610 4 655 1188 105 66 0 chr5 9282623 9282804 -143254455 - B2_Mm2 SINE B2 -2 193 1 4 655 726 158 50 14 chr5 9283233 9283374 -143253885 - B1_Mm SINE Alu -1 146 1 4 655 645 281 94 23 chr5 9283987 9284253 -143253006 - Lx8 LINE L1 -1015 6458 6174 4 655 511 258 111 96 chr5 9284377 9284647 -143252612 + Lx8 LINE L1 7170 7443 -30 4 655 266 284 153 21 chr5 9284783 9284927 -143252332 - L2 LINE L2 -843 2576 2414 4 655 312 394 45 5 chr5 9285174 9285373 -143251886 + L3 LINE CR1 3313 3519 -970 4 655 294 146 355 0 chr5 9285468 9285575 -143251684 - B2_Mm2 SINE B2 -4 191 47 4 655 1288 102 11 0 chr5 9285622 9285798 -143251461 - B2_Mm1t SINE B2 -14 179 2 4 655 483 96 0 0 chr5 9286018 9286091 -143251168 + L1_Mm LINE L1 2779 2851 -3032 4 655 5920 65 11 0 chr5 9286086 9286926 -143250333 - L1_Mm LINE L1 -3480 2403 1555 4 655 386 271 45 36 chr5 9287450 9287561 -143249698 - PB1D10 SINE Alu 0 117 6 4 655 230 239 40 66 chr5 9287498 9287574 -143249685 - B4A SINE B4 -136 156 83 4 655 1119 264 66 9 chr5 9289038 9289355 -143247904 - MTE2b LTR MaLR -39 340 6 4 655 22496 39 51 1 chr5 9289618 9292608 -143244651 + L1Md_F3 LINE L1 2446 5586 -297 4 655 7842 50 9 9 chr5 9292608 9293606 -143243653 + L1Md_F3 LINE L1 5587 6584 0 4 655 327 323 81 0 chr5 9293614 9293738 -143243521 - L1MB8 LINE L1 -286 5892 5759 4 655 1098 55 0 46 chr5 9295108 9295261 -143241998 - B1_Mus2 SINE Alu 0 147 2 4 655 2505 118 5 0 chr5 9295542 9295925 -143241334 - Lx2 LINE L1 -174 6823 6439 4 655 1031 157 16 0 chr5 9295928 9296119 -143241140 + Lx2 LINE L1 6798 6991 -6 4 655 458 233 164 10 chr5 9296143 9296247 -143241012 + RSINE1 SINE B4 17 136 -29 4 655 306 0 0 0 chr5 9296248 9296282 -143240977 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 655 237 382 18 0 chr5 9296373 9296483 -143240776 - MIRm SINE MIR 0 276 165 4 655 355 311 105 89 chr5 9296640 9297078 -143240181 - L2 LINE L2 -340 3079 2635 4 655 1599 170 144 50 chr5 9297356 9297739 -143239520 + MTD LTR MaLR 1 419 0 4 655 384 191 50 64 chr5 9297987 9298127 -143239132 - Lx5 LINE L1 -7 7043 6906 4 655 523 280 186 90 chr5 9298306 9298628 -143238631 - MLT1B LTR MaLR 0 390 38 4 655 975 201 20 20 chr5 9298815 9299013 -143238246 - B3 SINE B2 -18 198 1 4 655 857 191 202 0 chr5 9299183 9299356 -143237903 - B3 SINE B2 -8 208 1 4 655 3077 63 2 8 chr5 9299584 9299982 -143237277 - MTA_Mm LTR MaLR 0 396 1 5 655 1307 180 27 8 chr5 9300181 9300439 -143236820 + Lx4A LINE L1 6796 7058 0 5 655 297 109 0 0 chr5 9301302 9301348 -143235911 + (TATG)n Simple_repeat Simple_repeat 2 47 0 5 655 444 111 0 0 chr5 9301852 9301924 -143235335 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 655 318 26 0 0 chr5 9301931 9301970 -143235289 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 655 450 0 0 0 chr5 9301970 9302019 -143235240 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 655 496 312 69 21 chr5 9303070 9303361 -143233898 - L1MB5 LINE L1 -9 6165 5861 5 655 231 61 0 0 chr5 9303650 9303683 -143233576 + (T)n Simple_repeat Simple_repeat 1 33 0 5 655 766 238 228 27 chr5 9304213 9304558 -143232701 + MTD LTR MaLR 1 405 -14 5 81 39481 5 0 0 chr5 9304721 9311047 -143226212 - L1Md_A LINE L1 0 6582 256 5 656 329 349 87 20 chr5 9311182 9311378 -143225881 - L1M5 LINE L1 -399 5725 5517 5 656 230 202 340 0 chr5 9312388 9312482 -143224777 - Lx4A LINE L1 -2 7056 6931 5 656 335 60 20 0 chr5 9312484 9312534 -143224725 - Lx4A LINE L1 -317 6741 6691 5 656 180 111 0 0 chr5 9313192 9313219 -143224040 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 5 656 640 195 6 6 chr5 9313220 9313385 -143223874 + (CA)n Simple_repeat Simple_repeat 2 166 0 5 656 789 130 0 0 chr5 9313474 9313636 -143223623 + (TC)n Simple_repeat Simple_repeat 1 162 0 5 656 342 304 36 48 chr5 9313636 9313802 -143223457 - RSINE1 SINE B4 0 165 2 5 656 594 296 147 45 chr5 9314811 9314956 -143222303 - B4 SINE B4 0 292 152 5 656 2925 18 27 0 chr5 9314956 9315293 -143221966 - ORR1A0 LTR MaLR 0 346 1 5 656 594 296 147 45 chr5 9315293 9315412 -143221847 - B4 SINE B4 -141 151 1 5 656 1292 90 17 6 chr5 9315700 9315878 -143221381 + B2_Mm2 SINE B2 1 180 -15 5 656 250 250 15 15 chr5 9316684 9316749 -143220510 + MER82 DNA MER2_type 35 99 -554 5 656 499 259 123 0 chr5 9316781 9316943 -143220316 + MER82 DNA MER2_type 150 331 -322 5 656 765 151 20 0 chr5 9316972 9317124 -143220135 + GA-rich Low_complexity Low_complexity 2 156 0 5 656 394 250 32 16 chr5 9317813 9317939 -143219320 + MER33 DNA MER1_type 26 153 -171 5 656 220 351 104 52 chr5 9318485 9318620 -143218639 + B1_Mm SINE Alu 1 142 -5 5 656 13327 81 25 4 chr5 9319281 9319658 -143217601 - L1VL2 LINE L1 -627 2988 2596 5 656 354 23 0 0 chr5 9319658 9319701 -143217558 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 656 231 36 0 0 chr5 9319703 9319731 -143217528 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 5 656 13327 83 28 3 chr5 9319731 9322096 -143215163 - L1VL2 LINE L1 -1020 2595 172 5 656 380 246 60 27 chr5 9322430 9322614 -143214645 - L1MA10 LINE L1 -29 6305 6116 5 656 242 342 13 0 chr5 9322615 9322694 -143214565 - ID4_ SINE ID -2 81 2 5 656 344 233 56 68 chr5 9322794 9322876 -143214383 - L1M3 LINE L1 -737 5431 5348 5 656 345 100 0 0 chr5 9322876 9322926 -143214333 + (CCTA)n Simple_repeat Simple_repeat 1 50 0 5 656 344 233 56 68 chr5 9322926 9323004 -143214255 - L1M3 LINE L1 -821 5347 5273 5 656 1972 159 23 23 chr5 9323627 9323981 -143213278 + ORR1B1 LTR MaLR 41 394 0 5 656 730 233 0 0 chr5 9324612 9324758 -143212501 + B1F SINE Alu 1 146 -3 5 656 240 167 0 0 chr5 9325524 9325572 -143211687 + CT-rich Low_complexity Low_complexity 4 51 0 5 656 226 242 48 16 chr5 9325577 9325640 -143211619 - ID4_ SINE ID -16 67 3 5 656 560 278 84 42 chr5 9326182 9326445 -143210814 - B4A SINE B4 -18 274 1 5 656 319 312 185 5 chr5 9326485 9326685 -143210574 - L1MC4 LINE L1 -600 7442 7207 5 656 728 296 118 63 chr5 9326795 9327177 -143210082 - MTC LTR MaLR -14 407 5 5 656 254 269 97 106 chr5 9327210 9327447 -143209812 - L1MC4 LINE L1 -1036 7006 6772 5 656 1013 233 143 30 chr5 9327636 9327972 -143209287 - ORR1D1 LTR MaLR 0 374 1 5 656 231 175 94 16 chr5 9328055 9328119 -143209140 - L1ME2 LINE L1 -4 6160 6092 5 656 428 326 160 59 chr5 9328138 9328581 -143208678 - L1ME2 LINE L1 -115 6049 5562 5 656 395 41 0 0 chr5 9328618 9328667 -143208592 + L1Md_F2 LINE L1 5507 5555 -328 5 656 5953 64 31 16 chr5 9328667 9329462 -143207797 + L1Md_F2 LINE L1 5764 6570 -12 5 656 246 208 0 0 chr5 9329685 9329738 -143207521 - L1ME2 LINE L1 -966 5478 5426 5 656 557 245 32 58 chr5 9329815 9329971 -143207288 - RSINE1 SINE B4 -6 159 8 5 656 354 261 80 0 chr5 9330328 9330416 -143206843 + MTD LTR MaLR 18 112 -307 5 656 31640 44 0 2 chr5 9330417 9335777 -143201482 + L1Md_T LINE L1 151 5589 -297 5 656 9047 32 0 0 chr5 9335777 9336773 -143200486 + L1Md_T LINE L1 5590 6585 0 5 656 822 233 237 24 chr5 9336781 9337072 -143200187 + MTD LTR MaLR 67 419 0 5 656 202 169 0 48 chr5 9337141 9337203 -143200056 + CT-rich Low_complexity Low_complexity 2 60 0 5 656 356 327 99 10 chr5 9337401 9337602 -143199657 - L1ME2 LINE L1 -1096 5050 4832 5 656 571 245 64 7 chr5 9337634 9337774 -143199485 - B1F SINE Alu -1 148 1 5 656 280 115 19 0 chr5 9338204 9338256 -143199003 - B3 SINE B2 0 216 164 5 656 494 80 27 0 chr5 9338257 9338332 -143198927 + (TCCC)n Simple_repeat Simple_repeat 1 77 0 5 656 279 0 0 0 chr5 9338332 9338363 -143198896 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 656 613 200 102 51 chr5 9338365 9338502 -143198757 - B3 SINE B2 -71 145 2 5 656 218 281 0 30 chr5 9338579 9338645 -143198614 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 5 656 763 290 110 37 chr5 9338645 9338917 -143198342 - B4A SINE B4 0 292 1 5 656 252 0 0 0 chr5 9340144 9340172 -143197087 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 656 8511 36 1 7 chr5 9340211 9341450 -143195809 - L1Md_F2 LINE L1 0 6582 5352 5 656 350 260 118 48 chr5 9342993 9343179 -143194080 - LTR81B LTR ERV1? -15 1378 1180 5 656 585 106 0 0 chr5 9343907 9344011 -143193248 + (CCTG)n Simple_repeat Simple_repeat 2 105 0 5 656 435 83 0 0 chr5 9344020 9344080 -143193179 + (TCC)n Simple_repeat Simple_repeat 3 62 0 5 656 1182 90 0 0 chr5 9344082 9344227 -143193032 - B1_Mus1 SINE Alu -2 146 2 5 656 270 206 0 0 chr5 9345061 9345124 -143192135 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 656 421 366 114 19 chr5 9347176 9347493 -143189766 + MLT1L LTR MaLR 262 608 -2 5 656 24 0 0 0 chr5 9347663 9347687 -143189572 + AT_rich Low_complexity Low_complexity 1 24 0 5 656 1953 152 123 0 chr5 9348579 9348928 -143188331 - Lx4A LINE L1 -51 7007 6616 5 656 4604 136 9 22 chr5 9348926 9349680 -143187579 + Lx4A LINE L1 5798 6541 -517 5 656 408 20 0 0 chr5 9350567 9350616 -143186643 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 656 402 279 62 93 chr5 9350856 9351113 -143186146 + MLT1J LTR MaLR 186 434 -78 5 656 48 72 0 0 chr5 9351386 9351483 -143185776 + AT_rich Low_complexity Low_complexity 1 97 0 5 656 207 100 0 0 chr5 9351485 9351515 -143185744 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 656 1449 77 16 11 chr5 9351549 9351732 -143185527 - B2_Mm2 SINE B2 -8 187 4 5 656 397 173 22 59 chr5 9351746 9351852 -143185407 - B1_Mus2 SINE Alu -6 141 40 5 656 228 282 0 0 chr5 9351867 9351984 -143185275 + (CCCTG)n Simple_repeat Simple_repeat 2 118 0 5 656 419 299 182 6 chr5 9352321 9352486 -143184773 - Tigger5 DNA MER2_type -2193 213 20 5 656 353 128 316 44 chr5 9353588 9353702 -143183557 - B2_Mm2 SINE B2 -4 191 47 5 656 965 120 7 0 chr5 9354065 9354207 -143183052 - B2_Mm1t SINE B2 -50 143 1 5 656 270 271 97 48 chr5 9354290 9354414 -143182845 - MIR SINE MIR -9 253 124 5 656 791 280 57 80 chr5 9354473 9354772 -143182487 - B4 SINE B4 0 292 1 5 656 1230 54 0 39 chr5 9354807 9354960 -143182299 + B1_Mus2 SINE Alu 1 147 0 5 656 459 357 72 49 chr5 9355079 9355385 -143181874 + MLT1A LTR MaLR 20 332 -42 5 656 323 319 67 25 chr5 9358673 9358792 -143178467 - LTR33 LTR ERVL -350 165 42 5 656 302 261 103 15 chr5 9359674 9359810 -143177449 - L1MA6 LINE L1 -139 6161 6014 5 656 248 346 112 5 chr5 9360008 9360223 -143177036 - Kanga11a DNA Tc2 -450 520 283 5 656 233 269 86 9 chr5 9361206 9361311 -143175948 + L1ME4a LINE L1 5994 6106 -18 5 656 1278 85 0 0 chr5 9361561 9361738 -143175521 + (GGA)n Simple_repeat Simple_repeat 1 177 0 5 656 564 319 52 37 chr5 9362233 9362558 -143174701 - L1MEf LINE L1 -5396 804 475 5 656 830 235 36 40 chr5 9362701 9362923 -143174336 - ORR1D1 LTR MaLR 0 374 154 5 656 245 221 0 34 chr5 9362923 9363012 -143174247 + GA-rich Low_complexity Low_complexity 3 88 0 5 656 703 221 162 0 chr5 9363012 9363166 -143174093 - ORR1D1 LTR MaLR -193 181 3 5 656 428 215 377 6 chr5 9364854 9365030 -143172229 - 7SK RNA RNA -90 241 1 5 656 210 219 0 0 chr5 9365081 9365145 -143172114 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 656 633 217 0 0 chr5 9365158 9365338 -143171921 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 656 269 132 0 0 chr5 9366168 9366206 -143171053 - tRNA-Ile-ATT tRNA tRNA -39 38 1 5 656 519 214 81 20 chr5 9366206 9366354 -143170905 + Lx6 LINE L1 7277 7433 -27 5 656 6504 66 11 1 chr5 9366354 9367141 -143170118 - L1_Mus4 LINE L1 -7 6629 5835 5 656 2694 108 0 3 chr5 9367141 9367512 -143169747 + Lx6 LINE L1 5449 5819 -64 5 656 202 300 0 0 chr5 9367676 9367692 -143169567 + polypurine Low_complexity Low_complexity 3 18 0 5 656 261 261 123 0 chr5 9367692 9367757 -143169502 + ID4 SINE ID 1 73 -10 5 656 202 300 0 0 chr5 9367757 9367800 -143169459 + polypurine Low_complexity Low_complexity 19 61 0 5 656 828 274 70 0 chr5 9369107 9369308 -143167951 - B3 SINE B2 0 216 2 5 656 285 294 82 25 chr5 9369770 9369892 -143167367 + L2a LINE L2 3293 3421 -5 5 656 390 57 0 0 chr5 9370619 9370672 -143166587 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 656 451 305 33 66 chr5 9370676 9370827 -143166432 - B4A SINE B4 -14 278 133 5 656 610 69 24 109 chr5 9370837 9370968 -143166291 - B1_Mus1 SINE Alu -14 135 7 5 656 563 51 0 12 chr5 9371501 9371581 -143165678 + (TTTTC)n Simple_repeat Simple_repeat 4 82 0 5 656 216 216 0 0 chr5 9371885 9371936 -143165323 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 656 928 186 145 0 chr5 9372127 9372320 -143164939 + URR1A DNA MER1_type 1 221 -5 5 656 284 306 119 58 chr5 9372348 9372570 -143164689 + ORR1E LTR MaLR 1 233 -126 5 656 601 270 132 22 chr5 9372669 9372896 -143164363 + B4A SINE B4 2 253 -39 6 656 388 309 121 34 chr5 9373664 9374052 -143163207 + LTR37A LTR ERV1 1 422 -4 6 656 25 0 0 0 chr5 9374068 9374093 -143163166 + AT_rich Low_complexity Low_complexity 1 25 0 6 656 696 261 18 72 chr5 9374094 9374145 -143163114 - B3 SINE B2 -5 211 165 6 656 384 22 0 0 chr5 9374145 9374190 -143163069 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 656 696 261 18 72 chr5 9374190 9374361 -143162898 - B3 SINE B2 -52 164 1 6 656 990 125 0 17 chr5 9375238 9375417 -143161842 + (TA)n Simple_repeat Simple_repeat 2 177 0 6 656 2489 212 174 9 chr5 9375880 9376357 -143160902 - RMER19A LTR ERVK 0 737 194 6 656 549 0 0 0 chr5 9376357 9376418 -143160841 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 656 2489 212 174 9 chr5 9376418 9376573 -143160686 - RMER19A LTR ERVK -544 193 3 6 656 1123 290 74 65 chr5 9377327 9377854 -143159405 - RMER5 LTR ERV1 -2 532 1 6 656 387 311 84 32 chr5 9378320 9378569 -143158690 + MLT1-int LTR MaLR 6 267 -1104 6 656 1623 147 140 22 chr5 9378609 9378930 -143158329 - ORR1B2 LTR MaLR -8 359 1 6 656 262 131 49 0 chr5 9379034 9379095 -143158164 + GA-rich Low_complexity Low_complexity 2 65 0 6 656 251 205 35 82 chr5 9379096 9379181 -143158078 + MLT1-int LTR MaLR 517 597 -774 6 656 264 324 0 2 chr5 9379391 9379461 -143157798 + ID4_ SINE ID 8 76 -76 6 656 535 142 0 16 chr5 9379588 9379710 -143157549 + (TA)n Simple_repeat Simple_repeat 2 121 0 6 656 601 291 6 0 chr5 9380613 9380771 -143156488 - RSINE1 SINE B4 -4 161 3 6 656 921 164 13 20 chr5 9380963 9381112 -143156147 + B1_Mur3 SINE Alu 2 149 0 6 656 346 20 41 0 chr5 9381117 9381166 -143156093 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 656 719 150 0 6 chr5 9381167 9381229 -143156030 + (CAGAGA)n Simple_repeat Simple_repeat 1 62 0 6 656 906 122 0 0 chr5 9381229 9381409 -143155850 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 656 719 150 0 6 chr5 9381409 9381527 -143155732 + (CAGAGA)n Simple_repeat Simple_repeat 3 119 0 6 656 798 140 0 0 chr5 9381486 9381665 -143155594 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 656 225 319 95 11 chr5 9382633 9382728 -143154531 + MER63B DNA AcHobo 329 431 -5 6 656 241 0 59 39 chr5 9383032 9383083 -143154176 + (TA)n Simple_repeat Simple_repeat 2 53 0 6 656 197 330 90 0 chr5 9383603 9383703 -143153556 - MIRb SINE MIR -141 127 19 6 656 7251 52 0 0 chr5 9384054 9384923 -143152336 - L1_Mus1 LINE L1 0 6567 5699 6 656 478 0 0 0 chr5 9384925 9384976 -143152283 + Lx2 LINE L1 5655 5705 -1292 6 656 580 116 89 0 chr5 9385516 9385677 -143151582 - L1_Mus1 LINE L1 0 6567 6446 6 656 707 308 81 3 chr5 9386571 9386894 -143150365 + L1MA7 LINE L1 2413 2760 -3380 6 656 24 53 0 0 chr5 9386894 9386932 -143150327 + AT_rich Low_complexity Low_complexity 1 38 0 6 656 286 237 120 30 chr5 9387004 9387104 -143150155 + L1MA7 LINE L1 2754 2862 -3281 6 656 590 264 137 57 chr5 9387436 9388079 -143149180 + L1MA7 LINE L1 4860 5559 -753 6 656 462 253 44 31 chr5 9388388 9388547 -143148712 + L1MA7 LINE L1 5599 5759 -532 6 656 276 374 165 20 chr5 9388548 9388802 -143148457 + B4A SINE B4 2 292 0 6 656 281 293 0 0 chr5 9388802 9388877 -143148382 + (CATA)n Simple_repeat Simple_repeat 3 77 0 6 656 339 25 0 0 chr5 9388894 9388934 -143148325 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 656 405 310 22 37 chr5 9388937 9389071 -143148188 + B1F2 SINE Alu 18 149 0 6 656 468 264 13 67 chr5 9389075 9389301 -143147958 + L1MA7 LINE L1 5762 5972 -319 6 656 270 256 56 0 chr5 9389354 9389458 -143147801 + L1MA7 LINE L1 6170 6275 -37 6 656 208 327 69 1 chr5 9389865 9389957 -143147302 + MIRb SINE MIR 34 122 -140 6 656 192 314 0 54 chr5 9390388 9390462 -143146797 - MIR SINE MIR -26 236 167 6 656 254 87 22 0 chr5 9390803 9390849 -143146410 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 656 787 272 9 22 chr5 9390897 9391119 -143146140 + Lx7 LINE L1 6926 7144 -552 6 656 940 167 0 20 chr5 9391121 9391274 -143145985 - B1_Mur4 SINE Alu 0 150 1 6 656 257 263 18 0 chr5 9392414 9392471 -143144788 + polypyrimidine Low_complexity Low_complexity 3 60 0 6 656 189 268 17 67 chr5 9393062 9393122 -143144137 - MIR SINE MIR -119 89 33 6 656 214 360 53 18 chr5 9394329 9394442 -143142817 + L2a LINE L2 3309 3425 -1 6 656 284 169 0 13 chr5 9395255 9395333 -143141926 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 6 656 413 215 93 9 chr5 9395565 9395673 -143141586 + MTEb LTR MaLR 256 372 -7 6 656 200 61 61 0 chr5 9395879 9395912 -143141347 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 6 656 3966 38 8 6 chr5 9396491 9396973 -143140286 - L1Md_F2 LINE L1 -6 6576 6094 6 656 1399 242 80 46 chr5 9397219 9397609 -143139650 + MTD LTR MaLR 1 403 -16 6 656 214 182 0 0 chr5 9397879 9397923 -143139336 + A-rich Low_complexity Low_complexity 1 44 0 6 656 938 286 56 54 chr5 9399542 9400044 -143137215 - Lx9 LINE L1 -27 7617 7115 6 656 405 0 0 0 chr5 9400086 9400131 -143137128 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 656 1616 244 39 130 chr5 9400133 9400765 -143136494 + Lx9 LINE L1 6345 6926 -718 6 656 183 80 0 0 chr5 9400765 9400790 -143136469 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 656 1142 49 0 14 chr5 9400797 9400941 -143136318 - B1_Mus1 SINE Alu -6 142 1 6 656 1616 244 39 130 chr5 9400941 9401002 -143136257 + Lx9 LINE L1 6927 6982 -662 6 656 22 0 0 0 chr5 9401234 9401256 -143136003 + AT_rich Low_complexity Low_complexity 1 22 0 6 656 21 36 0 0 chr5 9401477 9401505 -143135754 + AT_rich Low_complexity Low_complexity 1 28 0 6 656 39549 4 1 0 chr5 9401879 9408284 -143128975 - L1Md_A LINE L1 0 6582 173 6 656 234 241 126 46 chr5 9408494 9408581 -143128678 - MTEb LTR MaLR 0 379 286 6 656 225 310 55 44 chr5 9408814 9408905 -143128354 - MTEb LTR MaLR -287 92 1 6 656 300 320 32 45 chr5 9409341 9409495 -143127764 - L1M5 LINE L1 -901 5245 5094 6 656 333 0 0 0 chr5 9409844 9409881 -143127378 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 656 502 230 212 0 chr5 9410050 9410276 -143126983 - Lx9 LINE L1 -125 7519 7246 6 656 28 0 0 0 chr5 9410381 9410409 -143126850 + AT_rich Low_complexity Low_complexity 1 28 0 6 656 1005 275 30 19 chr5 9411134 9411401 -143125858 - B4A SINE B4 -10 282 13 6 656 22 0 0 0 chr5 9411511 9411533 -143125726 + AT_rich Low_complexity Low_complexity 1 22 0 6 656 7290 61 1 4 chr5 9411749 9412973 -143124286 - L1Md_F2 LINE L1 -5 6577 5357 6 656 3068 74 9 0 chr5 9412974 9413409 -143123850 - L1Md_F2 LINE L1 -1428 4455 4017 6 656 2355 117 17 0 chr5 9413405 9413765 -143123494 - L1_Mm LINE L1 -80 5803 5438 6 656 2000 144 32 0 chr5 9414402 9414748 -143122511 - Lx LINE L1 0 6654 6298 6 656 24 32 0 0 chr5 9415486 9415517 -143121742 + AT_rich Low_complexity Low_complexity 1 31 0 6 656 5727 189 94 8 chr5 9415522 9416795 -143120464 - Lx5 LINE L1 -1 7049 5667 6 656 1060 308 54 46 chr5 9416988 9417634 -143119625 + Lx8 LINE L1 6815 7465 -8 6 656 2876 47 8 5 chr5 9419708 9420075 -143117184 - L1Md_F2 LINE L1 -1 6581 6214 6 656 218 250 0 0 chr5 9420202 9420250 -143117009 + CT-rich Low_complexity Low_complexity 2 49 0 6 656 222 37 0 0 chr5 9423859 9423886 -143113373 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 656 1931 126 17 55 chr5 9424043 9424388 -143112871 - Lx2 LINE L1 -4 6993 6662 6 656 487 183 24 0 chr5 9424390 9424472 -143112787 - B1_Mur1 SINE Alu -13 136 53 6 656 1025 250 25 46 chr5 9424984 9425265 -143111994 + B4 SINE B4 1 275 -17 6 656 324 162 12 24 chr5 9426644 9426726 -143110533 - Lx9 LINE L1 -7 7637 7557 6 656 477 0 0 0 chr5 9426765 9426818 -143110441 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 656 860 270 74 5 chr5 9426987 9427203 -143110056 + B4A SINE B4 1 231 -61 6 656 465 50 0 0 chr5 9427313 9427373 -143109886 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 656 1686 303 77 26 chr5 9428713 9429076 -143108183 + Tigger7 DNA MER2_type 1 387 -2104 6 656 414 0 0 0 chr5 9429076 9429122 -143108137 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 6 656 1686 303 77 26 chr5 9429122 9429341 -143107918 + Tigger7 DNA MER2_type 388 613 -1878 6 656 1565 264 22 86 chr5 9430099 9430609 -143106650 - RMER19C LTR ERVK -78 533 57 6 656 569 137 0 0 chr5 9430609 9430704 -143106555 - L1_Mus1 LINE L1 -917 4966 4872 6 656 7348 71 2 5 chr5 9430700 9432282 -143104977 + L1_Mus1 LINE L1 4987 6566 -1 6 656 487 87 0 0 chr5 9432288 9432357 -143104902 - RMER19C LTR ERVK -542 69 1 6 656 307 354 84 14 chr5 9433059 9433274 -143103985 + L1M5 LINE L1 5558 5787 -337 6 656 25 0 0 0 chr5 9433831 9433856 -143103403 + AT_rich Low_complexity Low_complexity 1 25 0 6 656 21 36 0 0 chr5 9436313 9436341 -143100918 + AT_rich Low_complexity Low_complexity 1 28 0 6 657 1698 162 35 65 chr5 9438231 9438633 -143098626 + RMER17C LTR ERVK 1 390 -20 6 657 570 305 37 54 chr5 9439336 9439631 -143097628 - B4A SINE B4 -2 290 1 6 657 1283 111 16 0 chr5 9439887 9440076 -143097183 - B2_Mm1t SINE B2 -1 192 1 6 657 293 315 71 27 chr5 9442164 9442347 -143094912 - Ricksha_c DNA MuDR -1150 898 708 6 657 321 26 0 0 chr5 9442854 9442892 -143094367 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 657 306 132 0 0 chr5 9442892 9442945 -143094314 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 657 1395 219 130 16 chr5 9443138 9443478 -143093781 + MTD LTR MaLR 1 379 -40 6 657 2867 83 2 15 chr5 9443478 9443882 -143093377 - Lx LINE L1 0 6654 6256 6 657 1395 219 130 16 chr5 9443882 9443917 -143093342 + MTD LTR MaLR 380 418 -1 6 657 375 105 0 0 chr5 9444117 9444174 -143093085 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 657 542 93 0 11 chr5 9444204 9444291 -143092968 + (TATG)n Simple_repeat Simple_repeat 4 89 0 6 657 288 250 0 0 chr5 9444312 9444368 -143092891 - B1F SINE Alu -30 119 64 6 657 534 16 0 0 chr5 9444933 9444996 -143092263 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 657 254 295 128 69 chr5 9445177 9445279 -143091980 + MER5B DNA MER1_type 8 115 -63 6 657 574 261 172 12 chr5 9445807 9446051 -143091208 + B4A SINE B4 2 284 -8 6 657 366 197 44 0 chr5 9447219 9447356 -143089903 + (CA)n Simple_repeat Simple_repeat 1 143 0 6 657 192 315 78 69 chr5 9448144 9448260 -143088999 + MIR SINE MIR 30 146 -62 6 657 956 55 0 8 chr5 9451607 9451734 -143085525 + B1_Mm SINE Alu 1 126 -21 7 657 526 294 36 62 chr5 9452077 9452269 -143084990 + MLT1A0 LTR MaLR 2 188 -177 7 657 3742 35 5 0 chr5 9452725 9453159 -143084100 - RLTR10C LTR ERVK 0 436 1 7 657 322 320 99 66 chr5 9453201 9453412 -143083847 + MLT1A0 LTR MaLR 191 408 0 7 657 245 300 46 133 chr5 9454912 9455108 -143082151 - Tigger16a DNA Tigger -294 639 461 7 657 560 343 51 6 chr5 9455994 9456170 -143081089 + B4 SINE B4 103 286 -6 7 657 776 293 110 64 chr5 9456214 9456318 -143080941 + L1MA4 LINE L1 5336 5439 -861 7 657 1011 60 0 50 chr5 9456318 9456459 -143080800 + B1_Mus2 SINE Alu 4 137 -10 7 657 313 22 21 21 chr5 9456459 9456506 -143080753 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 657 776 294 107 62 chr5 9456506 9456979 -143080280 + L1MA4 LINE L1 5440 5922 -378 7 657 186 278 93 0 chr5 9457956 9458010 -143079249 + L2c LINE L2 3101 3159 -228 7 657 625 302 24 36 chr5 9458075 9458240 -143079019 + RSINE1 SINE B4 2 164 -1 7 657 441 0 0 0 chr5 9458257 9458306 -143078953 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 657 980 270 55 48 chr5 9458310 9459042 -143078217 - L1MB7 LINE L1 -4 6180 5431 7 657 1328 299 149 65 chr5 9459345 9460739 -143076520 - Charlie9 DNA MER1_type -1192 1565 54 7 657 324 65 380 9 chr5 9462235 9462343 -143074916 - B2_Mm2 SINE B2 -1 194 47 7 657 1269 103 11 0 chr5 9462409 9462584 -143074675 - B2_Mm1t SINE B2 -16 177 1 7 657 968 216 118 0 chr5 9463419 9463716 -143073543 + Lx9 LINE L1 7313 7644 0 7 657 554 315 62 27 chr5 9464293 9464551 -143072708 + B4A SINE B4 3 269 -23 7 657 484 339 116 68 chr5 9464779 9465175 -143072084 - LTR40a LTR ERVL -8 511 97 7 657 324 0 0 0 chr5 9465182 9465218 -143072041 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 657 484 275 62 6 chr5 9465373 9465534 -143071725 - HERVL40-int LTR ERVL -21 5509 5340 7 657 189 0 0 0 chr5 9465735 9465756 -143071503 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 7 657 265 292 77 42 chr5 9467143 9467286 -143069973 - HERVL40-int LTR ERVL -1550 3980 3833 7 657 526 316 0 66 chr5 9467490 9467656 -143069603 + RSINE1 SINE B4 2 156 -9 7 657 6925 136 21 4 chr5 9468500 9469624 -143067635 - Lx4A LINE L1 -50 7008 5865 7 657 257 319 29 7 chr5 9470040 9470176 -143067083 - HERVL40-int LTR ERVL -3921 1609 1471 7 657 396 384 64 9 chr5 9470428 9470864 -143066395 - HERVL40-int LTR ERVL -4364 1166 707 7 657 783 299 62 51 chr5 9471101 9471376 -143065883 - B4 SINE B4 -3 289 12 7 657 238 290 108 0 chr5 9471540 9471633 -143065626 + ORR1A3 LTR MaLR 40 142 -184 7 657 227 298 86 17 chr5 9471665 9471781 -143065478 + ORR1A3 LTR MaLR 256 379 0 7 657 7195 115 13 7 chr5 9472231 9474066 -143063193 - L1_Mus4 LINE L1 -8 6628 4786 7 657 477 371 104 22 chr5 9474172 9474528 -143062731 - LTR40a LTR ERVL -82 437 53 7 657 1226 299 17 30 chr5 9475203 9475745 -143061514 - L1_Rod LINE L1 0 5847 5313 7 657 1064 302 51 37 chr5 9475838 9476408 -143060851 + L1M2 LINE L1 4644 5221 -922 7 657 441 238 33 47 chr5 9476649 9476668 -143060591 + CYRA11_Mm Unknown Y-chromosome 156 172 -445 7 657 839 140 7 0 chr5 9476668 9476804 -143060455 - URR1B DNA MER1_type 0 225 89 7 657 361 328 55 11 chr5 9476894 9477165 -143060094 - L1ME2z LINE L1 -361 6083 5801 7 657 285 237 183 67 chr5 9477829 9477933 -143059326 - PB1D10 SINE Alu -1 116 1 7 657 216 313 0 15 chr5 9478170 9478238 -143059021 + CT-rich Low_complexity Low_complexity 2 68 0 7 657 245 286 63 0 chr5 9478256 9478319 -143058940 - ID4 SINE ID -15 68 2 7 657 33 25 0 0 chr5 9478319 9478359 -143058900 + AT_rich Low_complexity Low_complexity 1 40 0 7 657 308 320 87 10 chr5 9478359 9478463 -143058796 - RSINE1 SINE B4 -18 147 36 7 657 187 56 83 0 chr5 9478495 9478531 -143058728 + (CCCTAA)n Simple_repeat Simple_repeat 2 40 0 7 657 21 36 0 0 chr5 9479649 9479677 -143057582 + AT_rich Low_complexity Low_complexity 1 28 0 7 657 230 167 0 36 chr5 9480759 9480815 -143056444 + (TATG)n Simple_repeat Simple_repeat 2 55 0 7 657 282 270 0 63 chr5 9484016 9484095 -143053164 + MLT1D LTR MaLR 1 74 -431 7 657 237 335 61 55 chr5 9484141 9484305 -143052954 + MLT1D LTR MaLR 83 247 -258 7 657 540 0 0 0 chr5 9484939 9484999 -143052260 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 657 229 26 26 26 chr5 9485435 9485474 -143051785 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 657 186 43 0 0 chr5 9485644 9485667 -143051592 + (A)n Simple_repeat Simple_repeat 1 23 0 7 657 328 346 134 30 chr5 9487171 9487343 -143049916 + L2 LINE L2 2393 2578 -841 7 657 303 28 0 0 chr5 9487343 9487379 -143049880 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 7 657 328 346 134 30 chr5 9487379 9487474 -143049785 + L2 LINE L2 2579 2688 -731 7 657 642 305 136 20 chr5 9487575 9487876 -143049383 + MER2B DNA MER2_type 1 336 0 7 657 23 0 0 0 chr5 9488941 9488964 -143048295 + AT_rich Low_complexity Low_complexity 1 23 0 7 657 678 91 0 0 chr5 9489125 9489224 -143048035 + (TC)n Simple_repeat Simple_repeat 2 100 0 7 657 983 159 5 0 chr5 9490506 9490720 -143046539 + CT-rich Low_complexity Low_complexity 1 215 0 7 657 330 351 168 15 chr5 9490866 9491325 -143045934 + L2a LINE L2 2610 3201 -225 7 657 3236 63 65 0 chr5 9491661 9492141 -143045118 - L1_Mus1 LINE L1 0 6567 6109 7 657 183 80 0 0 chr5 9492830 9492855 -143044404 + (T)n Simple_repeat Simple_repeat 1 25 0 7 657 1212 48 7 0 chr5 9492955 9493101 -143044158 - B1_Mus1 SINE Alu 0 148 2 7 657 348 369 72 32 chr5 9495650 9495871 -143041388 + MLT1H1 LTR MaLR 318 547 -8 7 657 5536 70 6 1 chr5 9495935 9496650 -143040609 - L1_Mus1 LINE L1 0 6567 5850 7 657 1448 163 131 6 chr5 9496948 9497299 -143039960 + RMER17C LTR ERVK 16 410 0 7 657 814 187 204 44 chr5 9497300 9497618 -143039641 + RMER17C-int LTR ERVK 1 369 -2869 7 657 222 261 0 0 chr5 9497964 9498010 -143039249 + polypyrimidine Low_complexity Low_complexity 4 49 0 7 657 268 302 35 0 chr5 9498776 9498862 -143038397 + RMER17C-int LTR ERVK 379 467 -2771 7 657 841 183 225 28 chr5 9499208 9499633 -143037626 + RMER17C-int LTR ERVK 1509 2016 -1222 7 657 546 165 35 0 chr5 9499668 9499783 -143037476 + RMER17C-int LTR ERVK 2241 2359 -879 7 657 1449 52 0 0 chr5 9499804 9499996 -143037263 - L1_Mus1 LINE L1 0 6567 6376 7 657 4715 54 38 2 chr5 9500000 9500635 -143036624 - L1_Mus1 LINE L1 -196 6371 5714 1 657 1876 149 136 13 chr5 9500641 9501184 -143036075 + RMER17C-int LTR ERVK 2576 3185 -53 2 657 1037 103 0 46 chr5 9501705 9501858 -143035401 + B1_Mm SINE Alu 2 147 0 3 657 309 51 0 0 chr5 9501858 9501897 -143035362 + (A)n Simple_repeat Simple_repeat 1 39 0 4 657 1183 191 40 92 chr5 9501902 9502276 -143034983 + RMER17C-int LTR ERVK 1113 1437 -1801 5 657 234 0 0 0 chr5 9503227 9503253 -143034006 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 657 2115 12 0 0 chr5 9503295 9503535 -143033724 + L1Md_A LINE L1 6343 6582 0 7 657 283 318 226 19 chr5 9505465 9505824 -143031435 + L2 LINE L2 2192 2624 -795 8 657 230 295 167 0 chr5 9505874 9505952 -143031307 + LTR40b LTR ERVL 65 155 -364 9 657 370 328 52 47 chr5 9505965 9506157 -143031102 + LTR40b LTR ERVL 270 462 0 9 657 192 40 0 0 chr5 9506326 9506351 -143030908 + (TGGG)n Simple_repeat Simple_repeat 4 28 0 1 657 1562 300 38 31 chr5 9507377 9507983 -143029276 - Lx8 LINE L1 -145 7328 6719 1 657 428 237 84 28 chr5 9508131 9508274 -143028985 + MER96B DNA hAT 20 170 -247 1 657 513 273 47 35 chr5 9508415 9508586 -143028673 + LTR40b LTR ERVL 290 462 0 1 657 27 29 0 0 chr5 9508998 9509032 -143028227 + AT_rich Low_complexity Low_complexity 1 34 0 1 657 237 62 0 59 chr5 9509332 9509383 -143027876 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 1 657 24 0 0 0 chr5 9509861 9509885 -143027374 + AT_rich Low_complexity Low_complexity 1 24 0 1 657 369 0 0 0 chr5 9510063 9510104 -143027155 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 657 221 138 45 30 chr5 9510104 9510171 -143027088 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 657 250 278 147 6 chr5 9510219 9510389 -143026870 - L1MA8 LINE L1 -42 6249 6056 1 657 275 299 92 0 chr5 9512717 9512804 -143024455 - L2c LINE L2 0 3387 3293 2 657 5082 195 51 20 chr5 9513309 9514378 -143022881 + RLTR25A LTR ERVK 1 1103 0 2 657 420 71 0 0 chr5 9514766 9514822 -143022437 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 657 970 265 4 137 chr5 9514872 9515348 -143021911 - Lx9 LINE L1 -150 7494 7082 2 657 414 57 0 0 chr5 9515956 9516009 -143021250 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 657 1007 270 31 18 chr5 9516071 9516357 -143020902 + B4 SINE B4 3 292 0 2 657 326 241 25 59 chr5 9516541 9516660 -143020599 + L1MC LINE L1 5317 5431 -2451 2 657 2587 182 58 35 chr5 9516711 9517183 -143020076 + RLTR20A2 LTR ERVK 1 491 -87 2 657 369 0 0 0 chr5 9517183 9517224 -143020035 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 657 2587 182 58 35 chr5 9517224 9517316 -143019943 + RLTR20A2 LTR ERVK 492 578 0 2 657 410 319 38 13 chr5 9517521 9517680 -143019579 + MLT1D LTR MaLR 292 454 -51 2 657 235 216 20 0 chr5 9518221 9518272 -143018987 + MLT1D LTR MaLR 454 505 0 2 657 435 269 11 11 chr5 9518955 9519049 -143018210 + B4 SINE B4 194 287 -5 3 657 555 29 0 0 chr5 9519053 9519122 -143018137 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 657 243 204 0 0 chr5 9519560 9519614 -143017645 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 3 657 186 103 0 0 chr5 9520314 9520343 -143016916 + (T)n Simple_repeat Simple_repeat 1 29 0 3 657 2114 148 63 8 chr5 9520399 9520766 -143016493 - ORR1B1 LTR MaLR -7 387 1 3 657 180 0 0 0 chr5 9521016 9521036 -143016223 + (TC)n Simple_repeat Simple_repeat 1 20 0 3 657 749 11 11 0 chr5 9521036 9521125 -143016134 + (CA)n Simple_repeat Simple_repeat 1 91 0 3 657 1011 175 185 55 chr5 9522111 9522473 -143014786 + RLTR9E LTR ERVK 1 409 0 3 657 1095 294 96 25 chr5 9522555 9522991 -143014268 - MLT1C LTR MaLR 0 467 1 3 657 463 308 0 0 chr5 9523132 9523249 -143014010 - PB1D10 SINE Alu 0 117 1 3 657 690 175 9 0 chr5 9523696 9523810 -143013449 + B3 SINE B2 2 116 -100 4 657 374 329 77 23 chr5 9523814 9523897 -143013362 - L1M5 LINE L1 -776 5370 5279 4 657 627 59 51 0 chr5 9523897 9524015 -143013244 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 4 657 374 329 77 23 chr5 9524015 9524152 -143013107 - L1M5 LINE L1 -868 5278 5138 4 657 250 316 76 60 chr5 9524320 9524505 -143012754 + L2c LINE L2 3185 3372 -15 4 657 309 228 0 0 chr5 9524638 9524717 -143012542 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 4 657 576 0 0 0 chr5 9524719 9524783 -143012476 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 4 657 1818 52 0 9 chr5 9524993 9525226 -143012033 + L1Md_F2 LINE L1 6340 6570 -12 4 657 351 0 0 0 chr5 9525276 9525315 -143011944 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 657 2936 108 20 24 chr5 9526067 9526522 -143010737 + Lx2 LINE L1 6545 6997 0 4 657 420 247 0 0 chr5 9527259 9527344 -143009915 - B3A SINE B2 -113 85 1 4 657 212 154 38 19 chr5 9527602 9527655 -143009604 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 5 657 2933 43 0 0 chr5 9527899 9528245 -143009014 - ORR1A1 LTR MaLR 0 346 1 5 657 254 260 0 59 chr5 9528732 9528834 -143008425 + (CATATA)n Simple_repeat Simple_repeat 5 100 0 5 657 201 152 0 0 chr5 9529592 9529625 -143007634 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 5 657 543 16 0 0 chr5 9529969 9530033 -143007226 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 657 235 222 19 0 chr5 9530034 9530088 -143007171 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 5 657 507 165 0 0 chr5 9530095 9530204 -143007055 + (CA)n Simple_repeat Simple_repeat 2 110 0 5 657 336 48 0 0 chr5 9530412 9530454 -143006805 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 657 387 0 0 0 chr5 9530728 9530771 -143006488 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 657 450 0 0 0 chr5 9531075 9531125 -143006134 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 5 657 507 263 129 18 chr5 9531614 9531784 -143005475 - B3 SINE B2 -8 208 20 6 657 320 248 215 0 chr5 9533245 9533366 -143003893 + L1Md_F LINE L1 488 634 -5885 6 657 726 288 5 40 chr5 9533368 9533586 -143003673 + B3 SINE B2 2 190 -5 6 657 270 0 0 0 chr5 9533598 9533628 -143003631 + (T)n Simple_repeat Simple_repeat 1 30 0 6 657 25 75 0 0 chr5 9533960 9534013 -143003246 + AT_rich Low_complexity Low_complexity 1 53 0 6 657 761 302 34 0 chr5 9534306 9534544 -143002715 + Lx8 LINE L1 6871 7116 -357 6 657 3075 75 18 0 chr5 9534551 9534951 -143002308 + L1_Mus1 LINE L1 6161 6567 0 6 657 252 0 0 0 chr5 9535032 9535060 -143002199 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 657 231 312 10 40 chr5 9535063 9535163 -143002096 + Lx8 LINE L1 7233 7329 -144 6 657 441 36 0 0 chr5 9535172 9535227 -143002032 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 657 2258 181 44 55 chr5 9535241 9535808 -143001451 + RLTR31_Mm LTR ERVK 1 561 0 6 657 567 0 0 0 chr5 9536872 9536935 -143000324 + (TTTTA)n Simple_repeat Simple_repeat 3 65 0 7 657 439 229 57 0 chr5 9536976 9537081 -143000178 - B3A SINE B2 -87 111 1 7 657 262 370 20 35 chr5 9537113 9537297 -142999962 - L2a LINE L2 -265 3110 2932 7 657 867 178 17 34 chr5 9537536 9537711 -142999548 - B2_Mm2 SINE B2 -22 173 2 7 657 230 347 40 20 chr5 9537734 9537834 -142999425 - B1F1 SINE Alu -47 102 1 7 657 1995 108 16 25 chr5 9537963 9538286 -142998973 + Lx3B LINE L1 6140 6459 -514 7 657 253 143 70 18 chr5 9538959 9539016 -142998243 + B1_Mm SINE Alu 82 141 -6 7 657 242 29 29 0 chr5 9539017 9539052 -142998207 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 7 657 23 0 0 0 chr5 9539139 9539162 -142998097 + AT_rich Low_complexity Low_complexity 1 23 0 7 657 278 350 14 21 chr5 9539530 9539670 -142997589 - B4A SINE B4 -13 279 141 7 657 441 0 0 0 chr5 9540093 9540142 -142997117 + (T)n Simple_repeat Simple_repeat 1 49 0 8 657 591 15 0 0 chr5 9540204 9540272 -142996987 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 8 657 402 21 0 0 chr5 9540272 9540319 -142996940 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 657 387 56 0 0 chr5 9540483 9540537 -142996722 + (TTTTTG)n Simple_repeat Simple_repeat 2 55 0 8 657 29682 104 20 4 chr5 9542090 9548303 -142988956 - L1_Mus1 LINE L1 -2 6565 248 8 657 465 300 44 142 chr5 9550140 9550568 -142986691 + RMER10A LTR ERVL 27 412 -30 8 657 462 188 0 0 chr5 9551499 9551600 -142985659 + (TG)n Simple_repeat Simple_repeat 2 102 0 8 657 205 186 23 0 chr5 9552207 9552250 -142985009 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 657 329 319 169 5 chr5 9553829 9554018 -142983241 + L2a LINE L2 2932 3151 -275 8 657 473 270 27 0 chr5 9554282 9554393 -142982866 + B1_Mur2 SINE Alu 32 145 -4 8 657 25 0 0 0 chr5 9554447 9554472 -142982787 + AT_rich Low_complexity Low_complexity 1 25 0 9 657 228 343 82 7 chr5 9555073 9555208 -142982051 + MIRb SINE MIR 72 216 -52 9 657 415 306 73 0 chr5 9555819 9555943 -142981316 - B4A SINE B4 -158 134 2 9 657 520 215 7 0 chr5 9555955 9556104 -142981155 - Lx9 LINE L1 -1 7643 7494 9 657 410 0 20 0 chr5 9557537 9557587 -142979672 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 657 794 209 7 0 chr5 9559919 9560067 -142977192 - Lx9 LINE L1 -409 7235 7087 9 657 577 145 15 53 chr5 9560076 9560207 -142977052 + Lx9 LINE L1 7292 7417 -227 9 657 246 32 0 0 chr5 9560207 9560238 -142977021 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 657 441 0 0 0 chr5 9560238 9560286 -142976973 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 657 619 176 7 7 chr5 9560302 9560445 -142976814 + Lx9 LINE L1 7495 7637 -7 9 657 211 286 91 0 chr5 9560557 9560634 -142976625 - L2a LINE L2 -71 3355 3272 9 657 5424 78 4 4 chr5 9560786 9561813 -142975446 + L1VL4 LINE L1 212 1238 -2321 9 657 4720 53 260 1 chr5 9561831 9562569 -142974690 + MTA_Mm-int LTR MaLR 170 1098 0 1 657 530 43 0 28 chr5 9562571 9562642 -142974617 + MTA_Mm LTR MaLR 3 71 -325 1 657 653 25 0 0 chr5 9562644 9562723 -142974536 + MTA_Mm LTR MaLR 318 396 0 1 657 1495 85 9 0 chr5 9562723 9562946 -142974313 + L1VL4 LINE L1 1860 2084 -1475 9 657 9009 151 17 20 chr5 9562956 9565390 -142971869 + Lx LINE L1 4218 6639 -15 1 657 320 281 36 12 chr5 9565431 9565514 -142971745 - ID_B1 SINE B4 -43 181 97 1 657 432 0 0 0 chr5 9565603 9565651 -142971608 + (CAAAA)n Simple_repeat Simple_repeat 4 51 0 1 657 279 335 61 61 chr5 9565787 9566197 -142971062 - L2a LINE L2 -429 2990 2581 9 657 685 40 59 0 chr5 9566333 9566434 -142970825 + (GAAAA)n Simple_repeat Simple_repeat 5 111 0 1 657 1674 10 0 0 chr5 9567005 9567201 -142970058 - L1Md_F3 LINE L1 -179 6405 6210 1 657 1340 28 72 6 chr5 9567201 9567382 -142969877 + L1Md_F3 LINE L1 6391 6583 -1 1 657 883 310 61 0 chr5 9567382 9567627 -142969632 + B4A SINE B4 31 290 -2 1 657 501 68 0 0 chr5 9567706 9567780 -142969479 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 658 853 122 4 30 chr5 9571726 9571874 -142965385 + B1_Mus1 SINE Alu 1 149 -1 1 658 349 324 32 35 chr5 9573964 9574120 -142963139 - B4 SINE B4 -134 158 14 1 658 217 275 14 55 chr5 9574058 9574131 -142963128 - BC1_Mm scRNA scRNA -79 73 4 1 658 355 319 118 30 chr5 9574196 9574561 -142962698 + L3 LINE CR1 2119 2515 -1974 1 658 316 315 0 18 chr5 9574833 9574946 -142962313 + PB1D10 SINE Alu 1 111 -6 1 658 231 349 37 10 chr5 9575551 9575678 -142961581 - PB1D10 SINE Alu -15 134 3 1 658 1016 223 91 20 chr5 9575790 9576088 -142961171 - Lx9 LINE L1 -374 7270 6952 1 658 793 213 139 8 chr5 9576364 9576615 -142960644 - Lx9 LINE L1 -657 6987 6704 1 658 208 270 122 11 chr5 9576620 9576710 -142960549 - MIRc SINE MIR -61 207 108 1 658 530 340 6 47 chr5 9577927 9578097 -142959162 - RSINE1 SINE B4 0 165 3 1 658 277 312 130 49 chr5 9580513 9580698 -142956561 + MIR SINE MIR 12 211 -51 1 658 1239 109 11 5 chr5 9582593 9582778 -142954481 + B2_Mm2 SINE B2 5 190 -5 1 658 579 96 0 0 chr5 9583861 9583944 -142953315 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 658 446 189 9 0 chr5 9584081 9584192 -142953067 + (TA)n Simple_repeat Simple_repeat 2 113 0 1 658 316 351 8 22 chr5 9584332 9584466 -142952793 - B1_Mus2 SINE Alu -15 132 1 1 658 309 376 6 71 chr5 9584466 9584501 -142952758 - ID_B1 SINE B4 -15 209 52 1 658 265 135 0 0 chr5 9584881 9584918 -142952341 - RLTR20A LTR ERVK 0 541 505 1 658 576 0 0 0 chr5 9584927 9584991 -142952268 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 658 207 0 0 0 chr5 9584991 9585013 -142952246 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 658 1836 180 43 103 chr5 9585013 9585478 -142951781 - RLTR20A LTR ERVK -102 439 3 1 658 345 319 63 65 chr5 9586810 9587089 -142950170 + MTEa LTR MaLR 80 370 -9 1 658 255 338 0 0 chr5 9588674 9588742 -142948517 + MIR3 SINE MIR 138 205 -3 1 658 224 222 19 0 chr5 9588830 9588884 -142948375 + CT-rich Low_complexity Low_complexity 2 56 0 1 658 27 0 0 0 chr5 9589415 9589442 -142947817 + AT_rich Low_complexity Low_complexity 1 27 0 1 658 4787 132 62 13 chr5 9591174 9592154 -142945105 + L1VL2 LINE L1 64 1100 -2515 1 658 19670 136 62 57 chr5 9592152 9598384 -142938875 + Lx LINE L1 386 6652 -2 1 658 3441 62 9 0 chr5 9598458 9598897 -142938362 - L1_Mus1 LINE L1 -2 6565 6123 1 658 3965 77 0 3 chr5 9598897 9599608 -142937651 + L1_Mus1 LINE L1 5428 6136 -431 1 658 207 0 0 0 chr5 9600318 9600341 -142936918 + (T)n Simple_repeat Simple_repeat 1 23 0 1 658 299 337 14 114 chr5 9600720 9600759 -142936500 + RMER12 LTR ERVK 733 762 -560 1 658 309 51 0 0 chr5 9600759 9600798 -142936461 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 658 299 337 14 114 chr5 9600798 9601039 -142936220 + RMER12 LTR ERVK 763 985 -337 1 658 255 247 20 92 chr5 9601535 9601633 -142935626 + MER46C DNA MER2_type 238 328 -10 1 658 25 90 0 0 chr5 9601815 9601882 -142935377 + AT_rich Low_complexity Low_complexity 1 67 0 1 658 6321 99 13 3 chr5 9601911 9602851 -142934408 + L1_Mus1 LINE L1 5617 6565 -2 1 658 340 328 96 7 chr5 9604822 9604957 -142932302 - B4A SINE B4 -2 290 144 1 658 282 247 141 13 chr5 9604976 9605054 -142932205 - B4 SINE B4 -200 92 5 1 658 11654 59 3 0 chr5 9605087 9606638 -142930621 + L1Md_F2 LINE L1 4032 5586 -297 1 658 8139 41 5 0 chr5 9606638 9607617 -142929642 + L1Md_F2 LINE L1 5587 6570 -12 1 658 279 0 0 0 chr5 9608478 9608509 -142928750 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 658 594 0 0 0 chr5 9608569 9608635 -142928624 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 658 1655 187 12 75 chr5 9609865 9610264 -142926995 + ORR1D1 LTR MaLR 1 374 0 1 658 438 284 28 0 chr5 9610311 9610420 -142926839 + PB1D10 SINE Alu 6 117 0 1 658 227 398 35 17 chr5 9610714 9610829 -142926430 + MLT1A1 LTR MaLR 9 125 -240 1 658 229 279 76 104 chr5 9610962 9611106 -142926153 + MLT1A1 LTR MaLR 265 404 -4 1 658 21 57 0 0 chr5 9611465 9611500 -142925759 + AT_rich Low_complexity Low_complexity 1 35 0 1 658 490 214 76 9 chr5 9611571 9611689 -142925570 - B1_Mur4 SINE Alu -27 120 3 1 658 32568 72 7 19 chr5 9611754 9616774 -142920485 + L1Md_F2 LINE L1 631 5585 -298 1 658 7984 52 1 0 chr5 9616775 9617757 -142919502 + L1Md_F2 LINE L1 5587 6569 -13 1 658 1085 93 0 6 chr5 9617754 9617926 -142919333 + L1Md_F2 LINE L1 6410 6580 -2 1 658 613 315 32 18 chr5 9618032 9618249 -142919010 + MTD LTR MaLR 35 254 -165 1 658 710 200 131 0 chr5 9618272 9618432 -142918827 + URR1A DNA MER1_type 46 226 0 1 658 423 240 31 27 chr5 9618432 9618592 -142918667 + MTD LTR MaLR 260 404 -15 1 658 194 295 41 31 chr5 9618698 9618796 -142918463 + MIR SINE MIR 107 205 -57 1 658 1140 255 36 108 chr5 9619156 9619543 -142917716 + ORR1E LTR MaLR 1 359 0 1 658 1636 239 51 60 chr5 9619701 9620115 -142917144 + MTD LTR MaLR 1 410 -9 1 658 362 244 44 11 chr5 9624294 9624385 -142912874 - RSINE1 SINE B4 -69 96 3 1 658 222 271 29 0 chr5 9625018 9625088 -142912171 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 658 564 309 5 82 chr5 9625090 9625284 -142911975 - B4A SINE B4 -6 286 108 1 658 279 0 0 0 chr5 9625399 9625430 -142911829 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 658 8373 31 2 0 chr5 9625612 9626603 -142910656 + L1Md_A LINE L1 5590 6582 0 1 658 313 248 50 40 chr5 9628496 9628606 -142908653 + MIRb SINE MIR 117 236 -32 1 658 237 239 16 41 chr5 9628826 9628948 -142908311 + CT-rich Low_complexity Low_complexity 3 121 0 1 658 336 322 62 20 chr5 9628978 9629124 -142908135 - HAL1-3A_ME LINE L1 -421 2437 2286 1 658 414 338 98 52 chr5 9630263 9630550 -142906709 + MLT1G3 LTR MaLR 109 408 -187 1 658 450 0 0 0 chr5 9630835 9630885 -142906374 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 658 782 106 0 8 chr5 9631109 9631233 -142906026 + (TTCC)n Simple_repeat Simple_repeat 2 124 0 1 658 223 271 10 68 chr5 9632729 9632832 -142904427 - MIR SINE MIR -46 216 120 1 658 286 384 23 0 chr5 9633005 9633138 -142904121 - MER5A DNA MER1_type -53 136 1 1 658 548 260 50 67 chr5 9633604 9633931 -142903328 + RLTR20D LTR ERVK 1 421 -113 1 658 5389 76 9 37 chr5 9633942 9634703 -142902556 - L1Md_F2 LINE L1 -12 6570 5831 1 658 5824 56 3 1 chr5 9634703 9635438 -142901821 + L1Md_F2 LINE L1 5064 5799 -84 1 658 520 236 25 45 chr5 9635438 9635586 -142901673 + RLTR20D LTR ERVK 387 578 0 1 658 246 32 0 0 chr5 9637372 9637403 -142899856 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 658 958 100 0 15 chr5 9637406 9637538 -142899721 - B1_Mus1 SINE Alu -14 134 5 1 658 2495 194 55 35 chr5 9637620 9638169 -142899090 + RLTR20B2 LTR ERVK 1 560 0 1 658 579 85 0 0 chr5 9638228 9638310 -142898949 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 658 1392 115 49 45 chr5 9639238 9639483 -142897776 + Lx3A LINE L1 6723 6968 -13 1 658 252 86 0 0 chr5 9639483 9639518 -142897741 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 658 22 0 0 0 chr5 9640797 9640819 -142896440 + AT_rich Low_complexity Low_complexity 1 22 0 1 658 3346 150 90 2 chr5 9641207 9641841 -142895418 - RMER6C LTR ERVK 0 690 1 1 658 213 39 0 0 chr5 9642142 9642168 -142895091 + (TCC)n Simple_repeat Simple_repeat 3 28 0 1 658 372 228 169 23 chr5 9642182 9642312 -142894947 - B1_Mur3 SINE Alu 0 149 1 1 658 348 227 0 25 chr5 9642491 9642613 -142894646 + (TATG)n Simple_repeat Simple_repeat 2 120 0 1 658 21 0 0 0 chr5 9643480 9643501 -142893758 + AT_rich Low_complexity Low_complexity 1 21 0 1 658 419 219 88 0 chr5 9644261 9644375 -142892884 + Lx9 LINE L1 7513 7636 -8 1 658 311 274 163 39 chr5 9645254 9645383 -142891876 + MLT1A LTR MaLR 225 369 -5 1 658 274 274 139 41 chr5 9645471 9645593 -142891666 + MLT1G1 LTR MaLR 67 200 -379 1 658 1029 89 0 0 chr5 9645813 9645959 -142891300 + (TTTC)n Simple_repeat Simple_repeat 4 149 0 1 658 23 33 0 0 chr5 9645993 9646023 -142891236 + AT_rich Low_complexity Low_complexity 1 30 0 1 658 704 78 0 0 chr5 9646029 9646131 -142891128 - L1_Mus2 LINE L1 -1 6565 6464 1 658 342 371 40 6 chr5 9646131 9646307 -142890952 - MIRb SINE MIR -62 206 25 1 658 237 83 0 0 chr5 9646681 9646717 -142890542 + (T)n Simple_repeat Simple_repeat 1 36 0 1 658 301 230 27 13 chr5 9646722 9646797 -142890462 + MER5A1 DNA MER1_type 87 162 -4 1 658 400 350 86 0 chr5 9647794 9647991 -142889268 - L3b LINE CR1 -242 240 27 1 658 318 270 0 0 chr5 9648563 9648626 -142888633 + ID2 SINE ID 8 70 -13 1 658 441 0 0 0 chr5 9648626 9648675 -142888584 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 658 267 323 0 40 chr5 9648675 9648711 -142888548 + BC1_Mm scRNA scRNA 71 103 -49 1 658 701 303 41 0 chr5 9649547 9649742 -142887517 - B3 SINE B2 -13 203 1 1 658 1005 98 0 103 chr5 9650079 9650273 -142886986 + Lx3A LINE L1 6806 6979 -2 1 658 187 122 41 0 chr5 9650274 9650323 -142886936 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 658 184 327 134 58 chr5 9650439 9650611 -142886648 + L2c LINE L2 3203 3387 0 1 658 284 83 21 0 chr5 9651469 9651517 -142885742 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 658 212 167 0 20 chr5 9651608 9651657 -142885602 + CT-rich Low_complexity Low_complexity 1 48 0 2 658 342 260 134 31 chr5 9652227 9652354 -142884905 + B1F SINE Alu 10 149 0 2 658 1205 48 7 0 chr5 9652362 9652508 -142884751 + B1_Mus2 SINE Alu 1 147 0 2 658 558 0 0 0 chr5 9652659 9652721 -142884538 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 2 658 482 216 107 10 chr5 9652723 9652826 -142884433 - PB1D9 SINE Alu -6 114 2 2 658 379 195 48 24 chr5 9652752 9652836 -142884423 - MT2B LTR ERVL -361 240 155 2 658 233 298 130 76 chr5 9652836 9652874 -142884385 - ID_B1 SINE B4 -52 148 35 2 658 213 376 16 57 chr5 9654105 9654229 -142883030 - MIRc SINE MIR -143 125 7 2 658 187 328 82 0 chr5 9655508 9655569 -142881690 - MIRc SINE MIR -182 86 21 2 658 1071 231 63 0 chr5 9655975 9656213 -142881046 + Lx8 LINE L1 6998 7250 -223 2 658 684 305 47 23 chr5 9656213 9656666 -142880593 + Lx7 LINE L1 5477 5907 -1789 2 658 330 26 0 0 chr5 9656670 9656709 -142880550 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 658 312 70 0 0 chr5 9656819 9656862 -142880397 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 658 672 56 0 0 chr5 9657301 9657390 -142879869 + (TC)n Simple_repeat Simple_repeat 2 90 0 2 658 264 100 0 0 chr5 9657862 9657902 -142879357 + (A)n Simple_repeat Simple_repeat 1 40 0 2 658 2748 181 109 45 chr5 9657994 9658597 -142878662 + RLTR26 LTR ERVK 1 642 0 2 658 225 0 0 0 chr5 9660098 9660123 -142877136 + (CAACC)n Simple_repeat Simple_repeat 4 28 0 2 658 1507 11 53 0 chr5 9660323 9660510 -142876749 + MTA_Mm LTR MaLR 1 197 -199 2 658 22 56 0 0 chr5 9660514 9660550 -142876709 + AT_rich Low_complexity Low_complexity 1 36 0 2 658 308 318 44 26 chr5 9661193 9661306 -142875953 + B1F1 SINE Alu 34 148 -1 2 658 402 21 0 0 chr5 9661677 9661724 -142875535 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 658 337 309 78 114 chr5 9662470 9662715 -142874544 + MIR SINE MIR 10 245 -17 2 658 200 226 0 70 chr5 9662715 9662772 -142874487 + polypyrimidine Low_complexity Low_complexity 4 56 0 2 658 258 338 72 11 chr5 9663110 9663230 -142874029 - MIR SINE MIR -139 129 3 2 658 199 356 25 25 chr5 9663242 9663363 -142873896 - MIR SINE MIR -75 187 67 2 658 306 0 0 0 chr5 9666453 9666487 -142870772 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 658 2707 79 11 8 chr5 9667175 9667565 -142869694 - L1Md_F2 LINE L1 0 6582 6193 2 658 1297 288 63 13 chr5 9667636 9668030 -142869229 + MTD LTR MaLR 6 419 0 2 658 291 283 69 48 chr5 9668115 9668260 -142868999 + B1F1 SINE Alu 2 149 0 2 658 236 382 12 50 chr5 9669870 9669950 -142867309 - PB1D7 SINE Alu -42 78 2 2 658 21 0 0 0 chr5 9670186 9670207 -142867052 + AT_rich Low_complexity Low_complexity 1 21 0 2 658 560 333 112 8 chr5 9671359 9671619 -142865640 + MamRep605 Unknown Unknown 437 723 -153 2 658 246 342 30 42 chr5 9672277 9672442 -142864817 + RSINE1 SINE B4 3 165 0 2 658 306 0 0 0 chr5 9672462 9672496 -142864763 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 658 447 19 0 0 chr5 9672496 9672547 -142864712 + (GA)n Simple_repeat Simple_repeat 2 53 0 2 658 410 0 20 0 chr5 9673547 9673597 -142863662 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 2 658 217 111 79 0 chr5 9673599 9673662 -142863597 + (TA)n Simple_repeat Simple_repeat 2 69 0 2 658 243 350 29 19 chr5 9673716 9673821 -142863438 + MIRb SINE MIR 106 211 -57 2 658 223 309 62 35 chr5 9674606 9674750 -142862509 + MIRb SINE MIR 118 265 -3 2 658 575 306 160 52 chr5 9674872 9675310 -142861949 - MLT1D LTR MaLR -1 504 20 2 658 346 384 0 19 chr5 9675452 9675614 -142861645 - RSINE1 SINE B4 -4 161 3 2 658 302 138 17 0 chr5 9675923 9675981 -142861278 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 658 331 279 0 29 chr5 9676017 9676087 -142861172 - B4A SINE B4 -216 76 9 2 658 741 78 320 0 chr5 9676236 9676364 -142860895 - MusHAL1 LINE L1 -1933 779 611 2 658 3655 61 4 19 chr5 9676365 9676850 -142860409 + L1_Mus2 LINE L1 6089 6566 0 2 658 258 200 26 35 chr5 9677213 9677327 -142859932 + (TATAA)n Simple_repeat Simple_repeat 3 115 0 2 658 478 301 78 0 chr5 9678570 9678723 -142858536 + RSINE1 SINE B4 1 165 0 2 658 197 33 33 0 chr5 9678752 9678782 -142858477 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 658 7198 117 18 9 chr5 9678821 9679124 -142858135 + Lx2 LINE L1 5902 6202 -795 2 658 3394 30 5 0 chr5 9679124 9679518 -142857741 - MTA_Mm LTR MaLR 0 396 1 2 658 7198 117 18 9 chr5 9679518 9680300 -142856959 + Lx2 LINE L1 6203 6997 0 2 658 562 308 110 13 chr5 9681713 9681950 -142855309 + RMER15 LTR ERVL 298 557 -18 2 658 265 191 29 29 chr5 9682550 9682620 -142854639 + LTR37B LTR ERV1 224 293 -175 2 658 877 319 62 3 chr5 9682780 9683138 -142854121 + MTEa LTR MaLR 1 379 0 2 658 563 0 15 0 chr5 9683228 9683295 -142853964 + (TTTTC)n Simple_repeat Simple_repeat 3 70 0 2 658 225 159 0 0 chr5 9683482 9683526 -142853733 + T-rich Low_complexity Low_complexity 1 44 0 2 658 295 176 0 0 chr5 9683677 9683728 -142853531 - ORR1B1 LTR MaLR -342 52 2 2 658 237 261 14 14 chr5 9684507 9684577 -142852682 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 2 658 461 337 40 97 chr5 9684682 9685083 -142852176 - L1MEg LINE L1 -3604 2542 2165 2 658 360 0 0 0 chr5 9685166 9685206 -142852053 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 658 1047 20 269 7 chr5 9685333 9685482 -142851777 - B2_Mm1t SINE B2 -5 188 1 2 658 417 344 60 45 chr5 9685727 9686107 -142851152 - L1MEg LINE L1 -4452 1790 1405 2 658 224 279 0 62 chr5 9686130 9686195 -142851064 - ID4 SINE ID -18 65 5 2 658 274 308 108 11 chr5 9686295 9686564 -142850695 - L1MEg LINE L1 -4958 1284 990 2 658 429 219 169 29 chr5 9686569 9686776 -142850483 - Lx9 LINE L1 -8 7636 7401 2 658 296 302 112 0 chr5 9687715 9687831 -142849428 - MIRb SINE MIR -29 239 111 2 658 7670 66 2 3 chr5 9687977 9689242 -142848017 + L1_Mus1 LINE L1 5294 6557 -10 2 658 255 61 0 0 chr5 9689242 9689275 -142847984 + (TAA)n Simple_repeat Simple_repeat 1 33 0 2 658 289 314 59 77 chr5 9689615 9689784 -142847475 - MIRc SINE MIR -60 208 43 2 658 277 370 37 42 chr5 9690185 9690374 -142846885 - MIRb SINE MIR -38 230 43 2 658 1262 236 56 33 chr5 9690981 9691318 -142845941 + MTD LTR MaLR 75 419 0 2 658 575 112 17 17 chr5 9693268 9693386 -142843873 + (TC)n Simple_repeat Simple_repeat 2 119 0 2 658 345 355 28 5 chr5 9693504 9693719 -142843540 + Lx9 LINE L1 7254 7473 -171 2 658 197 224 17 0 chr5 9693855 9693913 -142843346 + GA-rich Low_complexity Low_complexity 1 59 0 2 658 858 292 85 55 chr5 9694863 9695193 -142842066 + ORR1E LTR MaLR 5 344 -15 2 658 250 398 64 36 chr5 9695222 9695441 -142841818 - L3 LINE CR1 -378 4111 3887 2 658 23 33 0 0 chr5 9696097 9696127 -142841132 + AT_rich Low_complexity Low_complexity 1 30 0 2 658 429 280 67 22 chr5 9696694 9696829 -142840430 - ID_B1 SINE B4 -3 221 81 2 658 253 326 14 36 chr5 9698087 9698227 -142839032 - L3 LINE CR1 -3273 1216 1080 2 659 1603 190 36 109 chr5 9699331 9699745 -142837514 + ORR1C2 LTR MaLR 1 384 0 2 659 3935 48 64 9 chr5 9699941 9700469 -142836790 + LTRIS2 LTR ERV1 1 557 -7 2 659 382 331 46 26 chr5 9700570 9700722 -142836537 + MLT1F1 LTR MaLR 51 205 -364 2 659 278 275 248 4 chr5 9700794 9700929 -142836330 + MLT1F1 LTR MaLR 393 562 -7 2 659 231 36 0 0 chr5 9701277 9701305 -142835954 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2 659 215 244 0 0 chr5 9703033 9703074 -142834185 + polypyrimidine Low_complexity Low_complexity 1 41 0 2 659 957 83 0 0 chr5 9704143 9704275 -142832984 + (TCCCC)n Simple_repeat Simple_repeat 4 135 0 2 659 524 167 8 32 chr5 9704289 9704413 -142832846 - Lx2 LINE L1 -2 6995 6875 2 659 188 244 44 0 chr5 9706585 9706630 -142830629 - L2b LINE L2 -16 3359 3313 2 659 258 32 0 0 chr5 9707978 9708009 -142829250 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 659 574 319 94 8 chr5 9708026 9708282 -142828977 - B4A SINE B4 -12 280 3 2 659 204 356 165 14 chr5 9708622 9708901 -142828358 + L2 LINE L2 1814 2134 -1285 2 659 251 216 20 0 chr5 9710475 9710526 -142826733 + CT-rich Low_complexity Low_complexity 2 53 0 2 659 252 86 0 0 chr5 9711129 9711164 -142826095 + (CAAG)n Simple_repeat Simple_repeat 1 35 0 2 659 282 304 27 82 chr5 9711532 9711679 -142825580 + MIR SINE MIR 114 252 -10 2 659 249 324 0 0 chr5 9712312 9712386 -142824873 - L2a LINE L2 -5 3421 3348 2 659 192 242 88 29 chr5 9712627 9712695 -142824564 - L2 LINE L2 -549 2870 2799 2 659 240 122 0 0 chr5 9712696 9712737 -142824522 + (T)n Simple_repeat Simple_repeat 1 41 0 2 659 295 250 74 12 chr5 9712917 9712998 -142824261 - PB1D10 SINE Alu -7 110 25 2 659 340 339 32 24 chr5 9713244 9713368 -142823891 + L2 LINE L2 2657 2781 -638 2 659 24 32 0 0 chr5 9714019 9714050 -142823209 + AT_rich Low_complexity Low_complexity 1 31 0 2 659 837 244 54 0 chr5 9714281 9714486 -142822773 - B3 SINE B2 0 216 1 2 659 221 263 0 81 chr5 9715975 9716037 -142821222 - ID4_ SINE ID -10 73 17 2 659 325 202 168 53 chr5 9716037 9716168 -142821091 + ORR1B2 LTR MaLR 1 146 -221 2 659 226 264 322 0 chr5 9717342 9717429 -142819830 + MLT1A LTR MaLR 251 365 -9 2 659 444 37 0 0 chr5 9719574 9719628 -142817631 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 659 229 254 0 0 chr5 9719628 9719691 -142817568 + GA-rich Low_complexity Low_complexity 2 64 0 3 659 189 107 0 0 chr5 9719856 9719884 -142817375 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 3 659 793 256 73 56 chr5 9719884 9720170 -142817089 - B4A SINE B4 0 292 2 3 659 189 229 0 0 chr5 9725641 9725689 -142811570 + CT-rich Low_complexity Low_complexity 1 48 0 3 659 23 0 0 0 chr5 9726454 9726477 -142810782 + AT_rich Low_complexity Low_complexity 1 23 0 3 659 225 94 0 0 chr5 9726501 9726533 -142810726 + (A)n Simple_repeat Simple_repeat 1 32 0 3 659 702 99 75 22 chr5 9728629 9729159 -142808100 + (TCTA)n Simple_repeat Simple_repeat 1 558 0 3 659 264 340 119 52 chr5 9729944 9730230 -142807029 + LTR78 LTR ERV1 636 940 -364 3 659 452 62 0 58 chr5 9730488 9730557 -142806702 + B1_Mus2 SINE Alu 83 147 0 3 659 373 321 105 75 chr5 9730647 9730886 -142806373 - B4 SINE B4 -2 290 45 3 659 23 0 0 0 chr5 9731033 9731056 -142806203 + AT_rich Low_complexity Low_complexity 1 23 0 3 659 304 82 33 0 chr5 9731101 9731162 -142806097 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 659 393 188 0 0 chr5 9731638 9731718 -142805541 + (TA)n Simple_repeat Simple_repeat 1 80 0 3 659 324 83 0 0 chr5 9731718 9731766 -142805493 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 659 22 81 0 13 chr5 9733691 9733711 -142803548 + AT_rich Low_complexity Low_complexity 1 20 0 3 659 1061 108 0 0 chr5 9733711 9733850 -142803409 - B1_Mus1 SINE Alu -8 140 2 3 659 22 81 0 13 chr5 9733850 9733904 -142803355 + AT_rich Low_complexity Low_complexity 1 54 0 3 659 36 40 0 0 chr5 9735112 9735162 -142802097 + AT_rich Low_complexity Low_complexity 1 50 0 3 659 7786 64 8 1 chr5 9735776 9736954 -142800305 - L1_Mus1 LINE L1 0 6567 5383 3 659 287 325 104 40 chr5 9737208 9737381 -142799878 - MLT1I LTR MaLR -208 203 20 3 659 402 330 80 14 chr5 9737458 9737670 -142799589 - MIRb SINE MIR 0 268 43 3 659 373 298 84 50 chr5 9740711 9740972 -142796287 + L1MC3 LINE L1 7429 7698 -87 3 659 180 352 132 42 chr5 9742694 9742884 -142794375 + L2a LINE L2 2694 2900 -519 3 659 230 333 123 7 chr5 9743039 9743193 -142794066 + L2a LINE L2 3255 3426 0 3 659 737 313 6 0 chr5 9743596 9743775 -142793484 - B3 SINE B2 -34 182 3 3 659 2077 207 61 107 chr5 9744085 9744722 -142792537 + RMER19C LTR ERVK 1 608 -3 3 659 225 171 24 0 chr5 9744999 9745040 -142792219 - L2a LINE L2 -11 3415 3374 3 659 1975 184 36 0 chr5 9745090 9745455 -142791804 - ORR1C1 LTR MaLR 0 378 1 3 659 248 0 0 30 chr5 9745918 9745951 -142791308 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 659 480 264 0 107 chr5 9746292 9746470 -142790789 + Lx7 LINE L1 7290 7448 -248 3 659 710 234 100 17 chr5 9746573 9746803 -142790456 + Lx7 LINE L1 7448 7696 0 3 659 477 47 0 0 chr5 9747359 9747423 -142789836 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 659 884 178 11 33 chr5 9747486 9747666 -142789593 - B2_Mm2 SINE B2 -19 176 1 3 659 1832 203 101 8 chr5 9747668 9748045 -142789214 + MTC LTR MaLR 9 420 -1 3 659 30 45 0 0 chr5 9748113 9748157 -142789102 + AT_rich Low_complexity Low_complexity 1 44 0 3 659 27 29 0 0 chr5 9748762 9748796 -142788463 + AT_rich Low_complexity Low_complexity 1 34 0 3 659 858 56 42 0 chr5 9748855 9748998 -142788261 + (TCTCTG)n Simple_repeat Simple_repeat 2 150 0 3 659 695 260 172 48 chr5 9749001 9749397 -142787862 - Lx9 LINE L1 -176 7468 7024 3 659 5109 52 12 8 chr5 9749899 9750555 -142786704 - L1_Mus1 LINE L1 0 6567 5909 3 659 556 344 72 31 chr5 9750664 9750982 -142786277 - Lx7 LINE L1 -1164 6532 6202 3 659 4570 74 44 15 chr5 9750999 9751654 -142785605 - Lx3_Mus LINE L1 -9 7000 6327 3 659 1552 126 15 15 chr5 9751657 9751916 -142785343 + Lx3_Mus LINE L1 6053 6311 -698 3 659 452 275 0 21 chr5 9751930 9752071 -142785188 - Lx7 LINE L1 -1510 6186 6049 3 659 2682 67 3 0 chr5 9752091 9752437 -142784822 + L1Md_F3 LINE L1 5240 5586 -297 3 659 7196 72 20 2 chr5 9752438 9753404 -142783855 + L1Md_F3 LINE L1 5588 6570 -14 3 659 236 91 23 0 chr5 9753438 9753482 -142783777 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 3 659 1684 199 50 13 chr5 9753483 9753960 -142783299 - Lx7 LINE L1 -1678 6018 5521 3 659 21 36 0 0 chr5 9754361 9754389 -142782870 + AT_rich Low_complexity Low_complexity 1 28 0 3 659 1405 191 84 46 chr5 9754456 9754802 -142782457 - RLTR15 LTR ERVK 0 359 1 3 659 315 342 118 24 chr5 9754802 9755140 -142782119 - L1M4c LINE L1 -4644 1740 1371 3 659 1114 84 18 0 chr5 9755180 9755347 -142781912 + (CATATA)n Simple_repeat Simple_repeat 5 174 0 3 659 4352 161 74 20 chr5 9755475 9756331 -142780928 + RLTR13D6 LTR ERVK 1 902 0 3 659 294 225 258 0 chr5 9756943 9757032 -142780227 - RMER1A Other Other -915 115 4 3 659 430 181 142 33 chr5 9757049 9757169 -142780090 + RMER1A Other Other 898 1030 0 3 659 23 0 0 0 chr5 9757465 9757488 -142779771 + AT_rich Low_complexity Low_complexity 1 23 0 3 659 552 285 57 17 chr5 9758235 9758410 -142778849 + B3 SINE B2 1 182 -34 3 659 516 196 39 10 chr5 9758839 9758942 -142778317 - U6 snRNA snRNA -1 106 1 3 659 1235 82 0 8 chr5 9758951 9759196 -142778063 + (TCTCCC)n Simple_repeat Simple_repeat 1 242 0 3 659 1138 81 0 0 chr5 9759218 9759366 -142777893 - B1_Mus1 SINE Alu 0 148 1 3 659 24 32 0 0 chr5 9759513 9759544 -142777715 + AT_rich Low_complexity Low_complexity 1 31 0 3 659 220 150 67 0 chr5 9759620 9759680 -142777579 + (TATAA)n Simple_repeat Simple_repeat 5 68 0 3 659 288 279 10 10 chr5 9760402 9760518 -142776741 - L1M5 LINE L1 -970 5474 5359 3 659 355 279 52 57 chr5 9760605 9760799 -142776460 - L1M5 LINE L1 -1609 4537 4345 3 659 440 324 42 56 chr5 9760837 9760981 -142776278 - RSINE1 SINE B4 -20 145 4 3 659 7096 143 59 20 chr5 9761201 9762454 -142774805 + Lx4A LINE L1 5755 7056 -2 3 659 353 290 44 28 chr5 9762586 9762767 -142774492 - L1M5 LINE L1 -2150 3996 3813 3 659 238 294 45 105 chr5 9762885 9763018 -142774241 - MTE2a LTR MaLR -1 378 254 3 659 5002 108 14 18 chr5 9763796 9764566 -142772693 - Lx3A LINE L1 -373 6608 5842 3 659 2506 115 5 8 chr5 9764568 9764945 -142772314 + Lx3A LINE L1 6593 6968 -13 3 659 192 77 0 0 chr5 9764945 9764971 -142772288 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 3 659 379 200 0 32 chr5 9765233 9765326 -142771933 - Lx9 LINE L1 0 7644 7555 3 659 2232 119 25 0 chr5 9765326 9765645 -142771614 - ORR1A2 LTR MaLR 0 327 1 3 659 431 87 14 0 chr5 9765669 9765738 -142771521 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 659 189 0 0 0 chr5 9766022 9766043 -142771216 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 3 659 333 0 0 0 chr5 9768059 9768096 -142769163 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 659 1111 88 0 0 chr5 9773035 9773183 -142764076 + B1_Mus1 SINE Alu 1 148 0 3 659 450 0 0 0 chr5 9773246 9773296 -142763963 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 3 659 254 282 23 23 chr5 9774086 9774173 -142763086 - ID_B1 SINE B4 -26 198 112 3 659 296 303 233 36 chr5 9774498 9774717 -142762542 + Cheshire DNA MER1_type 2 263 -2157 3 659 958 302 47 44 chr5 9775776 9776136 -142761123 - Lx9 LINE L1 -390 7254 6894 3 659 2336 148 41 0 chr5 9776339 9776730 -142760529 + MTC LTR MaLR 1 407 -14 3 659 255 125 0 0 chr5 9776736 9776776 -142760483 + (T)n Simple_repeat Simple_repeat 1 40 0 3 659 368 287 14 22 chr5 9776951 9777090 -142760169 - RLTR15 LTR ERVK -221 138 1 3 659 5804 179 52 9 chr5 9777090 9777678 -142759581 - MYSERV-int LTR ERVK 0 6550 5940 3 659 441 0 0 0 chr5 9777678 9777727 -142759532 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 659 5804 179 52 9 chr5 9777727 9778314 -142758945 - MYSERV-int LTR ERVK -611 5939 5327 3 659 575 285 79 9 chr5 9778314 9778429 -142758830 - RLTR15 LTR ERVK -128 231 114 3 659 549 0 0 0 chr5 9778429 9778490 -142758769 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 659 575 285 79 9 chr5 9778490 9778590 -142758669 - RLTR15 LTR ERVK -246 113 3 3 659 34 24 0 0 chr5 9778825 9778866 -142758393 + AT_rich Low_complexity Low_complexity 1 41 0 3 659 2372 64 13 0 chr5 9779948 9780260 -142756999 + L1_Mus1 LINE L1 6252 6567 0 3 659 531 45 0 0 chr5 9780811 9780877 -142756382 + (CAAAC)n Simple_repeat Simple_repeat 4 69 0 3 659 7457 82 13 11 chr5 9782276 9783845 -142753414 - Lx3_Mus LINE L1 -323 6686 5115 3 659 2581 74 0 8 chr5 9783845 9784199 -142753060 + Lx3_Mus LINE L1 4760 5110 -776 3 659 215 200 32 53 chr5 9784808 9784903 -142752356 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 3 659 221 287 0 10 chr5 9784995 9785097 -142752162 + (TAA)n Simple_repeat Simple_repeat 2 102 0 3 659 203 263 0 0 chr5 9785216 9785254 -142752005 - MIRm SINE MIR -160 116 79 3 659 204 161 32 16 chr5 9786200 9786263 -142750996 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 659 308 250 26 0 chr5 9786272 9786348 -142750911 - L1MC1 LINE L1 -17 6316 6239 3 659 2130 211 23 35 chr5 9786441 9786889 -142750370 - RMER1B Other Other -215 851 282 3 659 247 250 0 0 chr5 9786913 9786973 -142750286 + L1_Mur1 LINE L1 694 753 -6231 3 659 2377 176 111 2 chr5 9787126 9787638 -142749621 + L1_Mur1 LINE L1 695 1262 -5722 3 659 900 227 70 44 chr5 9787638 9788046 -142749213 - RLTR20A2 LTR ERVK 0 551 1 3 659 6890 147 85 74 chr5 9788046 9788885 -142748374 + L1_Mur1 LINE L1 1257 2165 -3721 3 659 228 262 83 55 chr5 9788885 9788994 -142748265 + MER113 DNA MER1_type 176 287 -234 3 659 6890 147 85 74 chr5 9788994 9789645 -142747614 + L1_Mur1 LINE L1 2166 2873 -3013 3 659 5837 114 35 4 chr5 9789647 9791089 -142746170 + L1VL4 LINE L1 559 2055 -1859 3 659 4835 87 9 1 chr5 9791085 9791856 -142745403 + L1VL4 LINE L1 2945 3714 -2169 3 659 4263 144 30 40 chr5 9791836 9792633 -142744626 + L1_Mur1 LINE L1 4652 5440 -446 3 659 919 284 111 22 chr5 9793304 9793844 -142743415 - L1MA6 LINE L1 -358 5942 5355 3 659 480 381 32 6 chr5 9793865 9794021 -142743238 + RSINE1 SINE B4 6 165 0 3 659 215 220 0 39 chr5 9794021 9794073 -142743186 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 3 659 21 36 0 0 chr5 9794073 9794101 -142743158 + AT_rich Low_complexity Low_complexity 1 28 0 3 659 742 299 65 0 chr5 9794156 9794524 -142742735 - L1MA6 LINE L1 -870 5273 4882 3 659 337 184 103 0 chr5 9794546 9794633 -142742626 - Lx9 LINE L1 -7 7637 7542 3 659 839 264 77 40 chr5 9794647 9795047 -142742212 - L1_Mur3 LINE L1 -1350 4530 4139 3 659 440 310 11 11 chr5 9795046 9795235 -142742024 + L1_Mur3 LINE L1 3936 4124 -1756 3 659 429 333 69 11 chr5 9795234 9795668 -142741591 - L1MA6 LINE L1 -1824 4316 3858 3 659 554 248 108 68 chr5 9795767 9795906 -142741353 - L1MA6 LINE L1 -2568 3575 3432 3 659 358 214 0 0 chr5 9795906 9795990 -142741269 - Lx9 LINE L1 -8 7636 7553 3 659 554 248 108 68 chr5 9795990 9796351 -142740908 - L1MA6 LINE L1 -2712 3431 3055 3 659 205 180 10 92 chr5 9796395 9796421 -142740838 + T-rich Low_complexity Low_complexity 70 93 0 3 659 396 0 0 0 chr5 9796421 9796465 -142740794 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 659 205 180 10 92 chr5 9796465 9796536 -142740723 + T-rich Low_complexity Low_complexity 4 69 0 4 659 1787 102 0 35 chr5 9796541 9796827 -142740432 - L1Md_F2 LINE L1 0 6582 6307 4 659 942 35 0 0 chr5 9796827 9796941 -142740318 + (TTCCC)n Simple_repeat Simple_repeat 2 115 0 4 659 527 114 23 0 chr5 9796941 9797029 -142740230 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 4 659 2562 60 26 0 chr5 9797098 9797446 -142739813 + MusHAL1 LINE L1 318 674 -2038 4 659 1468 165 151 22 chr5 9797443 9797860 -142739399 - Lx2 LINE L1 -352 6645 6082 4 659 3168 146 34 0 chr5 9797862 9798397 -142738862 + Lx2 LINE L1 5879 6431 -566 4 659 511 292 36 0 chr5 9798610 9798747 -142738512 - B1_Mur2 SINE Alu -5 144 3 4 659 35 54 0 0 chr5 9798765 9798821 -142738438 + AT_rich Low_complexity Low_complexity 1 56 0 4 659 473 320 81 26 chr5 9798908 9799364 -142737895 - L1MA6 LINE L1 -3429 2714 2234 3 659 1014 212 14 0 chr5 9799358 9799570 -142737689 - RMER1B Other Other 0 1066 852 4 659 6519 193 52 4 chr5 9799591 9800929 -142736330 - Lx2B LINE L1 -3 6997 5596 4 659 280 212 221 12 chr5 9801026 9801112 -142736147 - RMER1C Other Other -1098 244 141 4 659 500 95 0 12 chr5 9801658 9801743 -142735516 + (CCAA)n Simple_repeat Simple_repeat 4 87 0 4 659 553 74 0 0 chr5 9802559 9802640 -142734619 - L1Md_F2 LINE L1 -10 6572 6492 4 659 256 316 36 41 chr5 9803269 9803464 -142733795 - L1MA6 LINE L1 -20 6280 6087 4 659 324 83 0 0 chr5 9804599 9804647 -142732612 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 659 317 339 79 16 chr5 9805120 9805309 -142731950 - L1ME1 LINE L1 -2 6177 5977 4 659 234 180 40 0 chr5 9805613 9805663 -142731596 + Lx8 LINE L1 7187 7238 -235 4 659 13782 24 1 0 chr5 9805664 9807970 -142729289 - L1Md_A LINE L1 0 6582 4275 4 659 683 262 58 29 chr5 9807970 9808210 -142729049 + Lx8 LINE L1 7222 7468 -5 4 659 505 277 7 37 chr5 9808288 9808423 -142728836 - RSINE1 SINE B4 -16 149 19 4 659 247 275 97 22 chr5 9808471 9808605 -142728654 - L1MD LINE L1 -2189 5806 5663 4 659 286 188 0 47 chr5 9808632 9808738 -142728521 + (TG)n Simple_repeat Simple_repeat 1 101 0 4 659 28 0 0 0 chr5 9809226 9809254 -142728005 + AT_rich Low_complexity Low_complexity 1 28 0 4 659 450 301 105 40 chr5 9809548 9809700 -142727559 - RSINE1 SINE B4 -1 164 3 4 659 265 250 127 16 chr5 9809773 9809899 -142727360 - L1M2 LINE L1 -1713 5132 4993 4 659 407 308 62 22 chr5 9809933 9810301 -142726958 - L1M2 LINE L1 -2833 4012 3630 4 659 674 243 14 0 chr5 9810351 9810499 -142726760 + B1_Mur4 SINE Alu 1 150 0 4 659 318 183 0 0 chr5 9810870 9810941 -142726318 + CT-rich Low_complexity Low_complexity 1 71 0 4 659 1380 44 0 0 chr5 9810941 9811121 -142726138 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 659 822 166 11 6 chr5 9811121 9811297 -142725962 + CT-rich Low_complexity Low_complexity 1 177 0 4 659 1129 90 0 0 chr5 9811302 9811446 -142725813 - B1_Mus1 SINE Alu -4 144 1 4 659 332 263 150 6 chr5 9811538 9811718 -142725541 - L1M2 LINE L1 -3802 3043 2838 4 659 893 296 113 16 chr5 9811868 9812239 -142725020 - MTD LTR MaLR -12 407 1 4 659 591 292 24 56 chr5 9812304 9812612 -142724647 - L1M2 LINE L1 -3961 2588 2248 4 659 33 25 0 0 chr5 9812758 9812798 -142724461 + AT_rich Low_complexity Low_complexity 1 40 0 4 659 1126 330 47 17 chr5 9812799 9813327 -142723932 - Lx9 LINE L1 -16 7628 7085 4 659 808 261 125 26 chr5 9813615 9813918 -142723341 - Lx8 LINE L1 -2 7471 7139 4 659 2851 102 0 0 chr5 9813951 9814353 -142722906 - L1Md_F2 LINE L1 -810 5073 4672 4 659 1380 92 0 0 chr5 9814353 9814537 -142722722 + L1Md_F2 LINE L1 5058 5241 -642 4 659 35289 45 0 3 chr5 9814578 9819807 -142717452 + L1Md_T LINE L1 281 5589 -297 4 659 8267 36 4 0 chr5 9819807 9820799 -142716460 + L1Md_T LINE L1 5590 6585 0 4 659 2815 47 0 0 chr5 9820802 9821146 -142716113 + L1Md_F2 LINE L1 5243 5586 -297 4 659 7613 57 15 8 chr5 9821148 9821881 -142715378 + L1Md_F2 LINE L1 5589 6322 -260 4 659 3531 13 0 2 chr5 9821881 9822278 -142714981 - MTA_Mm LTR MaLR 0 396 1 4 659 7613 57 15 8 chr5 9822278 9822518 -142714741 + L1Md_F2 LINE L1 6323 6569 -13 4 659 1051 284 16 62 chr5 9822541 9822912 -142714347 - Lx9 LINE L1 -266 7378 7025 4 659 301 274 31 21 chr5 9823044 9823141 -142714118 - MTE2a LTR MaLR 0 419 322 4 659 574 283 45 131 chr5 9823844 9824112 -142713147 - MTE2a LTR MaLR -134 245 1 4 659 22 0 0 0 chr5 9824115 9824137 -142713122 + AT_rich Low_complexity Low_complexity 1 22 0 4 659 896 313 31 51 chr5 9824404 9824774 -142712485 + MTE2a LTR MaLR 18 390 -29 4 659 2376 145 31 0 chr5 9824800 9825187 -142712072 + Lx4A LINE L1 6660 7058 0 4 659 22 35 0 0 chr5 9825187 9825216 -142712043 + AT_rich Low_complexity Low_complexity 1 29 0 4 659 21 0 0 0 chr5 9825269 9825290 -142711969 + AT_rich Low_complexity Low_complexity 1 21 0 4 659 1589 45 0 0 chr5 9825290 9825492 -142711767 + L1Md_F2 LINE L1 6376 6577 -5 4 659 675 237 7 0 chr5 9825667 9825802 -142711457 + B1_Mur3 SINE Alu 2 137 -12 4 659 201 108 0 0 chr5 9825810 9825847 -142711412 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 4 659 709 264 60 11 chr5 9826152 9826336 -142710923 + MTD LTR MaLR 1 193 -226 4 659 8332 8 0 4 chr5 9826338 9827277 -142709982 - L1Md_T LINE L1 0 6582 5648 4 659 5996 16 0 0 chr5 9827274 9827966 -142709293 + L1Md_T LINE L1 4955 5646 -237 4 659 753 256 102 44 chr5 9827966 9828191 -142709068 + MTD LTR MaLR 173 410 -9 4 659 337 325 59 41 chr5 9829127 9829297 -142707962 + MER5B DNA MER1_type 2 174 -4 4 659 1903 135 27 59 chr5 9829349 9829687 -142707572 - ORR1A2 LTR MaLR 0 327 1 4 660 950 236 19 9 chr5 9830518 9830728 -142706531 - B3 SINE B2 0 216 5 4 660 2534 122 10 16 chr5 9831075 9831567 -142705692 - L1_Mus4 LINE L1 -678 5958 5471 4 660 3666 118 63 2 chr5 9831589 9832156 -142705103 + Lx2 LINE L1 5948 6549 -448 4 660 1339 146 46 23 chr5 9832156 9832415 -142704844 + Lx2 LINE L1 6733 6997 0 4 660 355 323 30 15 chr5 9832415 9832436 -142704823 + L1Md_A LINE L1 6207 6232 -350 4 660 186 43 0 0 chr5 9832853 9832876 -142704383 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 660 6790 176 45 28 chr5 9832896 9834083 -142703176 - Lx4B LINE L1 -5 7053 5842 4 660 243 0 0 0 chr5 9834083 9834110 -142703149 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 660 215 31 0 30 chr5 9834110 9834142 -142703117 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 4 660 1061 109 0 0 chr5 9834142 9834279 -142702980 - B1_Mus2 SINE Alu -10 137 1 4 660 6790 181 28 36 chr5 9834279 9834739 -142702520 - Lx4B LINE L1 -1217 5841 5379 4 660 535 293 56 55 chr5 9834805 9835151 -142702108 + RMER15 LTR ERVL 38 320 -255 4 660 1460 135 56 4 chr5 9835150 9835417 -142701842 + RLTR15 LTR ERVK 61 341 -18 4 660 1543 261 27 20 chr5 9835436 9835882 -142701377 + Lx5 LINE L1 6596 7044 -6 4 660 6194 123 69 4 chr5 9836099 9837361 -142699898 + Lx LINE L1 5332 6647 -7 4 660 304 324 54 68 chr5 9837453 9837748 -142699511 - L1M5 LINE L1 -1739 4407 4117 4 660 21 0 0 0 chr5 9837931 9837952 -142699307 + AT_rich Low_complexity Low_complexity 1 21 0 4 660 35 24 0 0 chr5 9838106 9838148 -142699111 + AT_rich Low_complexity Low_complexity 1 42 0 4 660 468 308 32 2 chr5 9838432 9838662 -142698597 + L1_Rod LINE L1 5625 5929 -250 4 660 192 77 0 0 chr5 9838667 9838693 -142698566 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 660 1495 33 0 0 chr5 9838934 9839141 -142698118 + L1Md_A LINE L1 6399 6582 0 4 660 1063 206 32 21 chr5 9840036 9840318 -142696941 + Lx6 LINE L1 5033 5317 -563 4 660 441 0 0 0 chr5 9840320 9840369 -142696890 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 4 660 333 0 0 0 chr5 9840462 9840499 -142696760 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 4 660 525 122 37 0 chr5 9840499 9840581 -142696678 - B1_Mur4 SINE Alu -3 147 63 4 660 5007 202 25 10 chr5 9840582 9841946 -142695313 + Lx6 LINE L1 5325 6719 -741 4 660 1753 181 6 18 chr5 9841946 9842277 -142694982 - ORR1A4 LTR MaLR -2 327 1 4 660 5007 216 35 15 chr5 9842277 9842303 -142694956 + Lx6 LINE L1 6720 6738 -722 4 660 515 296 82 86 chr5 9842564 9842808 -142694451 - B4A SINE B4 -48 244 2 4 660 1219 61 0 0 chr5 9843052 9843199 -142694060 + B1_Mus2 SINE Alu 1 147 0 4 660 735 100 0 0 chr5 9843471 9843581 -142693678 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 4 660 2217 191 68 14 chr5 9844096 9844537 -142692722 + RLTR20B1 LTR ERVK 4 468 -95 4 660 203 79 26 0 chr5 9844538 9844576 -142692683 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 660 312 278 0 14 chr5 9844582 9844655 -142692604 + RLTR20B1 LTR ERVK 456 527 -36 4 660 180 152 0 0 chr5 9845254 9845287 -142691972 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 4 660 376 362 66 22 chr5 9845291 9845562 -142691697 + B4A SINE B4 2 284 -8 4 660 252 286 0 13 chr5 9845579 9845657 -142691602 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 660 304 245 14 0 chr5 9845873 9846016 -142691243 + CT-rich Low_complexity Low_complexity 2 146 0 4 660 22 0 0 0 chr5 9846525 9846547 -142690712 + AT_rich Low_complexity Low_complexity 1 22 0 4 660 12391 109 31 9 chr5 9846551 9848655 -142688604 + MusHAL1 LINE L1 230 2381 -331 4 660 2021 184 129 72 chr5 9848655 9849228 -142688031 + RLTR6_Mm LTR ERV1 1 606 -48 4 660 61524 37 12 0 chr5 9849228 9856912 -142680347 + RLTR6-int LTR ERV1 3 7778 0 4 660 252 224 209 0 chr5 9856912 9856979 -142680280 + RLTR6_Mm LTR ERV1 1 81 -573 4 660 1947 132 261 27 chr5 9857019 9857463 -142679796 + RLTR6_Mm LTR ERV1 37 584 -70 4 660 11541 150 25 5 chr5 9857463 9859757 -142677502 + Lx LINE L1 3575 5915 -721 4 660 2514 115 44 12 chr5 9859757 9860163 -142677096 + Lx LINE L1 6229 6647 -7 4 660 298 267 79 83 chr5 9860220 9860449 -142676810 + Charlie2a DNA MER1_type 1010 1237 -1624 4 660 183 42 0 0 chr5 9860476 9860500 -142676759 + (CATTA)n Simple_repeat Simple_repeat 2 25 0 4 660 290 289 10 0 chr5 9860676 9860773 -142676486 - L1MCa LINE L1 -6345 163 66 4 660 389 294 58 77 chr5 9860783 9861162 -142676097 - L1MEc LINE L1 -5496 904 533 4 660 312 321 79 0 chr5 9861243 9861383 -142675876 - L1MEc LINE L1 -5934 466 316 4 660 574 335 56 22 chr5 9861384 9861616 -142675643 - B4A SINE B4 -51 241 2 4 660 180 0 0 0 chr5 9861685 9861705 -142675554 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 660 22 0 0 0 chr5 9862425 9862447 -142674812 + AT_rich Low_complexity Low_complexity 1 22 0 4 660 317 266 93 91 chr5 9862651 9863015 -142674244 + Charlie2a DNA MER1_type 1533 1897 -964 4 660 368 53 50 50 chr5 9863024 9863104 -142674155 + (TCTCTG)n Simple_repeat Simple_repeat 1 80 0 4 660 486 288 73 5 chr5 9863141 9863281 -142673978 + B1_Mur1 SINE Alu 1 144 -6 4 660 189 0 0 0 chr5 9863364 9863385 -142673874 + (T)n Simple_repeat Simple_repeat 1 21 0 4 660 1095 95 0 7 chr5 9863385 9863533 -142673726 - B1_Mus1 SINE Alu 0 148 2 4 660 216 228 0 0 chr5 9863647 9863704 -142673555 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 660 4993 84 20 13 chr5 9863744 9864297 -142672962 - Lx3_Mus LINE L1 -542 6467 5910 5 660 207 0 0 0 chr5 9864297 9864320 -142672939 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 660 4993 84 20 13 chr5 9864320 9864526 -142672733 - Lx3_Mus LINE L1 -1100 5909 5704 5 660 4088 74 6 2 chr5 9864526 9865070 -142672189 + Lx3_Mus LINE L1 6464 7009 0 5 660 1203 62 0 0 chr5 9865088 9865234 -142672025 + B1_Mus2 SINE Alu 1 146 -1 5 660 323 391 53 50 chr5 9865323 9865665 -142671594 + MLT1A LTR MaLR 20 362 -12 5 660 933 239 141 9 chr5 9866702 9867035 -142670224 + Lx9 LINE L1 7262 7638 -6 5 660 1562 33 16 0 chr5 9867141 9867325 -142669934 + B2_Mm1t SINE B2 1 187 -6 5 660 4165 123 64 65 chr5 9867361 9867830 -142669429 - RMER17D2 LTR ERVK 0 809 325 5 660 701 70 10 0 chr5 9867830 9867930 -142669329 + (GGAGA)n Simple_repeat Simple_repeat 1 101 0 5 660 4165 123 64 65 chr5 9867930 9868270 -142668989 - RMER17D2 LTR ERVK -485 324 1 5 660 896 96 5 48 chr5 9868748 9868935 -142668324 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 660 189 330 103 47 chr5 9869250 9869463 -142667796 + L2a LINE L2 3010 3234 -192 5 660 196 309 23 58 chr5 9869476 9869562 -142667697 - L2a LINE L2 -4 3422 3340 5 660 676 287 116 40 chr5 9870032 9870729 -142666530 - L1MA5 LINE L1 -5 6295 5546 5 660 252 306 24 8 chr5 9870904 9871029 -142666230 - L1MA5 LINE L1 -823 5489 5363 5 660 353 310 41 27 chr5 9871032 9871530 -142665729 + L1M3 LINE L1 4841 5345 -798 5 660 476 365 43 104 chr5 9871548 9872104 -142665155 - MLT1F2 LTR MaLR -38 522 1 5 660 355 189 218 43 chr5 9872492 9872618 -142664641 - Lx9 LINE L1 -1 7643 7483 5 660 195 100 0 0 chr5 9872618 9872648 -142664611 + (CATA)n Simple_repeat Simple_repeat 1 30 0 5 660 355 189 218 43 chr5 9872648 9872709 -142664550 - Lx9 LINE L1 -162 7482 7423 5 660 1309 224 38 30 chr5 9872729 9873102 -142664157 - Lx9 LINE L1 -78 7566 7191 5 660 4324 239 63 20 chr5 9874332 9875522 -142661737 + Lx5 LINE L1 5805 7045 -5 5 660 630 307 95 31 chr5 9875608 9875934 -142661325 + Lx7 LINE L1 6098 6444 -1252 5 660 306 0 0 0 chr5 9875958 9875992 -142661267 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 660 28 61 0 0 chr5 9876047 9876096 -142661163 + AT_rich Low_complexity Low_complexity 1 49 0 5 660 22 70 0 0 chr5 9876567 9876610 -142660649 + AT_rich Low_complexity Low_complexity 1 43 0 5 660 258 322 102 0 chr5 9876821 9876939 -142660320 - MIR SINE MIR -40 222 93 5 660 1733 260 31 27 chr5 9877262 9877740 -142659519 - RLTR16 LTR ERVK -25 480 1 5 660 2156 202 50 72 chr5 9878229 9878745 -142658514 + RLTR18B LTR ERVK 8 512 0 5 660 547 340 28 24 chr5 9879136 9879389 -142657870 - Lx8 LINE L1 -179 7294 7041 5 660 28126 108 32 8 chr5 9879667 9885829 -142651430 + L1_Mus1 LINE L1 285 6567 0 5 660 586 325 27 82 chr5 9885829 9886242 -142651017 - Lx8 LINE L1 -830 6643 6254 5 660 6653 141 36 1 chr5 9886488 9887720 -142649539 - L1_Mur2 LINE L1 -1019 4858 3583 5 660 2746 111 5 12 chr5 9887727 9888129 -142649130 + MTB_Mm LTR MaLR 9 407 0 5 660 3613 171 19 19 chr5 9888129 9888864 -142648395 - MusHAL1 LINE L1 -315 2397 1663 5 660 663 78 0 0 chr5 9888874 9888964 -142648295 + (TTTC)n Simple_repeat Simple_repeat 1 90 0 5 660 360 71 0 79 chr5 9888947 9889023 -142648236 + CT-rich Low_complexity Low_complexity 4 73 0 5 660 962 72 0 72 chr5 9889028 9889222 -142648037 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 5 660 4846 151 14 7 chr5 9889222 9890101 -142647158 - MusHAL1 LINE L1 -1028 1684 800 5 660 1380 205 16 38 chr5 9890087 9890402 -142646857 - L1VL4 LINE L1 -5490 812 505 5 660 342 250 22 0 chr5 9890727 9890819 -142646440 + Lx9 LINE L1 7383 7476 -168 5 660 360 0 0 0 chr5 9890825 9890865 -142646394 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 660 229 292 65 9 chr5 9890980 9891087 -142646172 + Lx8 LINE L1 7353 7465 -8 5 660 404 351 50 88 chr5 9891123 9891304 -142645955 - B3A SINE B2 -23 175 2 5 660 1054 69 0 0 chr5 9891563 9891693 -142645566 + B1_Mus1 SINE Alu 2 131 -17 5 660 207 0 0 0 chr5 9891716 9891739 -142645520 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 660 1227 48 0 0 chr5 9892049 9892196 -142645063 + B1_Mus2 SINE Alu 1 147 0 5 660 272 72 7 292 chr5 9892243 9892380 -142644879 + L1Md_F2 LINE L1 6483 6580 -2 5 660 252 204 0 0 chr5 9892397 9892441 -142644818 + 5S rRNA rRNA 1 44 -77 5 660 785 79 0 9 chr5 9892441 9892556 -142644703 + (TTCC)n Simple_repeat Simple_repeat 2 115 0 5 660 7103 154 91 16 chr5 9892576 9894282 -142642977 - Lx4A LINE L1 0 7058 5246 5 660 534 201 50 6 chr5 9895097 9895256 -142642003 - L1MA7 LINE L1 -15 6285 6107 5 660 1459 209 80 8 chr5 9895314 9895676 -142641583 + L1MA9 LINE L1 5347 5734 -557 5 660 1619 225 108 3 chr5 9895888 9896258 -142641001 + MTD LTR MaLR 11 419 0 5 660 299 283 141 5 chr5 9896269 9896461 -142640798 - L1M2 LINE L1 -1626 4517 4300 5 660 428 200 9 0 chr5 9896503 9896608 -142640651 + (TA)n Simple_repeat Simple_repeat 2 107 0 5 660 363 283 51 0 chr5 9896608 9896746 -142640513 + L1MA9 LINE L1 5782 5926 -386 5 660 199 146 18 18 chr5 9896747 9896803 -142640456 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 660 1570 80 44 4 chr5 9898656 9898882 -142638377 - L1Md_F2 LINE L1 0 6582 6348 5 660 376 378 42 11 chr5 9898907 9899097 -142638162 - MIR SINE MIR -47 215 20 5 660 408 301 84 18 chr5 9899386 9899525 -142637734 - Lx9 LINE L1 -35 7609 7457 5 660 249 33 0 0 chr5 9899525 9899555 -142637704 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 660 408 301 84 18 chr5 9899555 9899699 -142637560 - Lx9 LINE L1 -188 7456 7308 5 660 579 254 54 6 chr5 9899712 9899878 -142637381 + Lx9 LINE L1 6827 7000 -644 5 660 2979 121 23 35 chr5 9900008 9900489 -142636770 - MT2C_Mm LTR ERVL 0 475 1 5 660 284 54 0 0 chr5 9900490 9900527 -142636732 - MERVL-int LTR ERVL -1 5484 5448 5 660 274 131 213 0 chr5 9900527 9900588 -142636671 - ORR1A3-int LTR MaLR -1323 640 567 5 660 17313 109 7 4 chr5 9900712 9903122 -142634137 - MERVL-int LTR ERVL -133 5352 2937 5 660 1405 166 5 0 chr5 9903123 9903346 -142633913 - Lx4A LINE L1 -678 6380 6157 5 660 4111 86 9 0 chr5 9903443 9903988 -142633271 + MERVL-int LTR ERVL 2341 2890 -2595 5 660 508 164 34 11 chr5 9903988 9904098 -142633161 + Lx4B LINE L1 6352 6470 -588 5 660 1281 166 0 57 chr5 9904106 9904336 -142632923 + Lx4B LINE L1 6595 6811 -247 5 660 651 206 0 28 chr5 9904330 9904475 -142632784 + Lx4B LINE L1 6916 7056 -2 5 660 1201 54 0 0 chr5 9904485 9904633 -142632626 + B1_Mus1 SINE Alu 1 148 0 5 660 214 194 15 15 chr5 9904633 9904691 -142632568 + A-rich Low_complexity Low_complexity 13 70 0 5 660 587 402 98 18 chr5 9905146 9905607 -142631652 - MLT1F2 LTR MaLR 0 560 66 5 660 477 0 0 0 chr5 9905607 9905660 -142631599 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 660 587 402 98 18 chr5 9905660 9905710 -142631549 - MLT1F2 LTR MaLR -495 65 9 5 660 29 0 0 0 chr5 9906187 9906216 -142631043 + AT_rich Low_complexity Low_complexity 1 29 0 5 660 187 276 136 48 chr5 9906880 9906983 -142630276 - L2a LINE L2 -8 3418 3307 5 660 3583 63 39 0 chr5 9907392 9907849 -142629410 + MT2C_Mm LTR ERVL 1 475 0 5 660 800 224 77 74 chr5 9908303 9908563 -142628696 - MT2B LTR ERVL -83 518 100 5 660 209 278 0 18 chr5 9908660 9908715 -142628544 + (CTG)n Simple_repeat Simple_repeat 1 54 0 5 660 343 407 40 0 chr5 9908862 9909012 -142628247 - RSINE1 SINE B4 -8 157 2 5 660 359 221 162 40 chr5 9909139 9909238 -142628021 + MER5A DNA MER1_type 7 117 -72 5 660 285 29 0 0 chr5 9909252 9909286 -142627973 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 5 660 863 209 88 85 chr5 9909434 9909753 -142627506 + MT2A LTR ERVL 1 459 -142 5 660 362 141 0 27 chr5 9909779 9909852 -142627407 + (CATA)n Simple_repeat Simple_repeat 2 72 0 5 660 1218 295 56 8 chr5 9909855 9910245 -142627014 - Lx8 LINE L1 -450 7023 6615 5 660 22 88 0 0 chr5 9910430 9910487 -142626772 + AT_rich Low_complexity Low_complexity 1 57 0 5 660 222 211 0 38 chr5 9912937 9913016 -142624243 + (CAAA)n Simple_repeat Simple_repeat 4 79 0 5 660 605 244 23 0 chr5 9913760 9913891 -142623368 + Lx9 LINE L1 7240 7373 -271 5 660 188 321 103 35 chr5 9913900 9914016 -142623243 + MIRb SINE MIR 95 218 -50 5 660 3598 218 93 42 chr5 9914421 9915512 -142621747 + MYSERV6-int LTR ERVK 7813 8958 -1 5 660 693 281 17 73 chr5 9915517 9915744 -142621515 + RLTR11B LTR ERVK 4 218 -235 5 660 788 39 0 19 chr5 9915744 9915849 -142621410 + (GAGAA)n Simple_repeat Simple_repeat 4 106 0 5 660 693 282 58 112 chr5 9915849 9916114 -142621145 + RLTR11B LTR ERVK 219 494 -34 5 660 444 37 0 0 chr5 9916317 9916371 -142620888 + (TATG)n Simple_repeat Simple_repeat 2 55 0 5 660 22 0 0 0 chr5 9916890 9916912 -142620347 + AT_rich Low_complexity Low_complexity 1 22 0 5 660 291 384 78 23 chr5 9916929 9917144 -142620115 + MLT1J2 LTR MaLR 1 229 -219 5 660 531 0 0 0 chr5 9917258 9917317 -142619942 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 660 652 316 43 98 chr5 9918024 9918329 -142618930 - MTE2a LTR MaLR -2 377 90 5 660 311 302 69 50 chr5 9920672 9920874 -142616385 - L1MC4a LINE L1 0 7882 7677 5 660 778 250 18 46 chr5 9920880 9921098 -142616161 - ID_B1 SINE B4 -8 216 5 5 660 450 0 0 0 chr5 9921118 9921168 -142616091 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 660 26 50 0 0 chr5 9921864 9921904 -142615355 + AT_rich Low_complexity Low_complexity 1 40 0 5 660 4855 195 34 28 chr5 9922076 9922358 -142614901 + L1Md_F2 LINE L1 23 519 -6205 5 660 3928 44 8 0 chr5 9922358 9922838 -142614421 + L1Md_F3 LINE L1 6101 6584 0 5 660 32684 114 18 23 chr5 9922838 9924312 -142612947 + L1Md_F2 LINE L1 520 1958 -3925 5 660 247 78 39 0 chr5 9924312 9924363 -142612896 + (CAA)n Simple_repeat Simple_repeat 2 54 0 5 660 32684 57 9 17 chr5 9924363 9928005 -142609254 + L1Md_F2 LINE L1 1959 5585 -298 5 660 7792 60 2 1 chr5 9928006 9928988 -142608271 + L1Md_F2 LINE L1 5588 6570 -12 5 660 16378 66 2 1 chr5 9928988 9931142 -142606117 + L1_Mm LINE L1 3328 5483 -400 5 660 2038 95 3 66 chr5 9931150 9931498 -142605761 - IAPLTR1a_Mm LTR ERVK -11 326 1 5 660 26200 16 4 0 chr5 9931498 9934442 -142602817 - IAPEz-int LTR ERVK 0 6481 3525 5 660 914 81 24 0 chr5 9934442 9934565 -142602694 - IAPEz-int LTR ERVK -2770 4910 4785 5 660 1811 123 4 4 chr5 9934562 9934824 -142602435 - IAPEz-int LTR ERVK -5183 2497 2236 5 660 442 66 0 32 chr5 9934813 9934876 -142602383 - IAPEz-int LTR ERVK -5062 1419 1359 5 660 2737 65 25 1 chr5 9934876 9935556 -142601703 - IAPEz-int LTR ERVK -5819 662 1 5 660 2044 95 3 66 chr5 9935557 9935905 -142601354 - IAPLTR1a_Mm LTR ERVK -11 326 1 5 660 850 83 0 0 chr5 9935905 9936014 -142601245 + L1Md_F2 LINE L1 5478 5586 -297 5 660 7652 70 2 0 chr5 9936015 9937008 -142600251 + L1Md_F2 LINE L1 5588 6582 0 5 660 654 68 0 0 chr5 9937020 9937108 -142600151 + (GGAA)n Simple_repeat Simple_repeat 1 88 0 6 660 872 152 0 6 chr5 9937157 9937323 -142599936 + (CA)n Simple_repeat Simple_repeat 1 165 0 6 660 374 265 69 40 chr5 9937375 9937548 -142599711 - Lx7 LINE L1 -364 7332 7155 6 660 23 68 0 0 chr5 9937817 9937861 -142599398 + AT_rich Low_complexity Low_complexity 1 44 0 6 660 382 220 140 0 chr5 9937862 9937962 -142599297 + PB1D9 SINE Alu 2 115 -5 6 660 21 0 0 0 chr5 9937978 9937999 -142599260 + AT_rich Low_complexity Low_complexity 1 21 0 6 660 21 0 0 0 chr5 9939170 9939191 -142598068 + AT_rich Low_complexity Low_complexity 1 21 0 6 660 1473 282 21 26 chr5 9939599 9940025 -142597234 - Lx6 LINE L1 -23 7437 7014 6 660 328 344 65 61 chr5 9940193 9940422 -142596837 + MLT1D LTR MaLR 251 480 -25 6 660 198 0 0 0 chr5 9940469 9940491 -142596768 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 660 395 363 63 40 chr5 9940507 9940682 -142596577 - B3A SINE B2 -12 186 8 6 660 356 289 72 0 chr5 9940809 9940892 -142596367 + ID_B1 SINE B4 81 169 -55 6 660 283 320 90 0 chr5 9940815 9940915 -142596344 + PB1D10 SINE Alu 6 114 -3 6 660 733 191 75 6 chr5 9941306 9941480 -142595779 + L1VL2 LINE L1 94 279 -6056 6 660 1453 151 68 0 chr5 9941476 9941755 -142595504 + L1_Mur2 LINE L1 3610 3907 -1970 6 660 2492 161 10 17 chr5 9941750 9942166 -142595093 - Lx LINE L1 -74 6580 6168 6 660 346 130 0 0 chr5 9942166 9942235 -142595024 + Lx LINE L1 6582 6650 -4 6 660 7466 112 13 1 chr5 9942397 9943539 -142593720 + Lx LINE L1 5488 6648 -6 6 660 349 410 78 49 chr5 9944603 9944911 -142592348 - MLT1F2 LTR MaLR -240 320 4 6 660 342 0 0 0 chr5 9946566 9946604 -142590655 + (TATG)n Simple_repeat Simple_repeat 2 39 0 6 660 291 325 101 35 chr5 9946628 9946797 -142590462 - L2a LINE L2 -86 3340 3161 6 660 540 261 50 103 chr5 9947074 9947368 -142589891 - MTD LTR MaLR -14 407 152 6 660 1668 154 61 15 chr5 9947368 9947711 -142589548 + RLTR15 LTR ERVK 1 359 0 6 660 473 290 39 167 chr5 9947711 9947722 -142589537 - MTD LTR MaLR -270 151 141 6 660 2669 171 19 6 chr5 9947770 9948286 -142588973 - L1_Mur2 LINE L1 -482 5395 4873 6 660 2747 138 36 5 chr5 9948285 9948717 -142588542 + L1_Mm LINE L1 5412 5859 -24 6 660 1466 162 27 31 chr5 9948717 9949009 -142588250 + Lx LINE L1 6364 6654 0 6 660 576 288 41 102 chr5 9949844 9950041 -142587218 - B3A SINE B2 -10 185 1 6 660 270 0 0 0 chr5 9950278 9950308 -142586951 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 660 219 395 130 15 chr5 9950470 9950601 -142586658 - B4A SINE B4 -145 147 2 6 660 233 346 46 8 chr5 9950859 9950990 -142586269 + MamGypLTR1b LTR Gypsy 646 781 -1 6 660 450 0 0 0 chr5 9951420 9951470 -142585789 + (CATA)n Simple_repeat Simple_repeat 1 50 0 6 660 255 119 0 0 chr5 9951493 9951519 -142585740 + (TA)n Simple_repeat Simple_repeat 1 26 0 6 660 3343 35 2 0 chr5 9951519 9951914 -142585345 + MTA_Mm LTR MaLR 1 396 0 6 660 255 119 0 0 chr5 9951914 9951929 -142585330 + (TA)n Simple_repeat Simple_repeat 2 16 0 6 660 180 254 55 0 chr5 9952616 9952671 -142584588 - MER5A DNA MER1_type -42 147 90 6 660 186 286 141 11 chr5 9952923 9953015 -142584244 + MER5A DNA MER1_type 47 150 -39 6 660 21 36 0 0 chr5 9953955 9953983 -142583276 + AT_rich Low_complexity Low_complexity 1 28 0 6 660 29 60 0 0 chr5 9954674 9954724 -142582535 + AT_rich Low_complexity Low_complexity 1 50 0 6 660 252 0 0 0 chr5 9954740 9954768 -142582491 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 6 660 206 206 16 0 chr5 9956471 9956534 -142580725 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 660 405 240 99 61 chr5 9957397 9957610 -142579649 - L1MC5 LINE L1 -733 7228 7008 6 660 253 180 33 0 chr5 9957885 9957946 -142579313 + T-rich Low_complexity Low_complexity 5 67 0 6 660 2326 247 55 86 chr5 9958109 9958787 -142578472 - Lx6 LINE L1 -4 7456 6800 6 660 667 193 17 75 chr5 9958785 9958959 -142578300 + Lx6 LINE L1 6459 6622 -838 6 660 2084 197 10 5 chr5 9959232 9959624 -142577635 - ORR1B1 LTR MaLR 0 394 1 6 660 24 0 0 0 chr5 9960134 9960158 -142577101 + AT_rich Low_complexity Low_complexity 1 24 0 6 82 4075 176 64 14 chr5 9960717 9961713 -142575546 + Lx5 LINE L1 5499 6529 -521 6 661 861 249 72 17 chr5 9961719 9961956 -142575303 + Lx5 LINE L1 6792 7041 -9 6 661 204 143 0 0 chr5 9961966 9962008 -142575251 + (CTAA)n Simple_repeat Simple_repeat 3 44 0 6 661 322 237 50 40 chr5 9962012 9962113 -142575146 + Lx7 LINE L1 7591 7692 -4 6 661 204 70 22 44 chr5 9962114 9962159 -142575100 + (GAAA)n Simple_repeat Simple_repeat 3 46 0 6 661 3984 169 47 125 chr5 9962159 9962212 -142575047 + ORR1B1-int LTR MaLR 1032 1085 -878 6 661 243 0 0 0 chr5 9962212 9962239 -142575020 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 661 3984 173 47 92 chr5 9962239 9963496 -142573763 + ORR1B1-int LTR MaLR 1 1935 -28 6 661 22690 128 19 6 chr5 9963761 9968201 -142569058 + L1Md_F LINE L1 264 4763 -1120 6 661 613 289 125 0 chr5 9968203 9968411 -142568848 - Lx8 LINE L1 -495 6978 6745 6 661 30 0 0 0 chr5 9969567 9969597 -142567662 + AT_rich Low_complexity Low_complexity 1 30 0 6 661 1194 222 52 10 chr5 9970559 9970868 -142566391 - Lx7 LINE L1 -6 7690 7369 6 661 4456 110 49 3 chr5 9970870 9971538 -142565721 + L1VL2 LINE L1 265 963 -5372 6 661 3506 208 73 70 chr5 9971541 9971698 -142565561 + L1Md_F2 LINE L1 174 340 -6384 6 661 892 121 21 70 chr5 9971698 9971884 -142565375 - L1Md_A LINE L1 0 6582 6406 6 661 30788 94 18 9 chr5 9971884 9977100 -142560159 + L1Md_F2 LINE L1 341 5585 -298 6 661 6987 96 12 2 chr5 9977101 9978086 -142559173 + L1Md_F2 LINE L1 5587 6581 -1 6 661 12782 99 14 22 chr5 9978087 9979040 -142558219 + MusHAL1 LINE L1 47 982 -1730 6 661 2641 78 239 2 chr5 9979040 9979454 -142557805 - RLTR1B LTR ERV1 0 512 1 6 661 12782 99 14 22 chr5 9979454 9980398 -142556861 + MusHAL1 LINE L1 983 1935 -777 6 661 6292 68 2 26 chr5 9980398 9981240 -142556019 - RLTR13B2 LTR ERVK 0 822 1 6 661 12782 99 14 22 chr5 9981240 9981397 -142555862 + MusHAL1 LINE L1 1936 2085 -627 6 661 25 102 0 0 chr5 9981403 9981491 -142555768 + AT_rich Low_complexity Low_complexity 1 88 0 6 661 3025 228 33 37 chr5 9981520 9982269 -142554990 - Lx7 LINE L1 -347 7349 6604 6 661 5510 189 69 102 chr5 9982668 9984708 -142552551 - L1_Mur3 LINE L1 -3022 2858 439 6 661 1890 224 32 12 chr5 9985107 9985519 -142551740 + MTC LTR MaLR 1 420 -1 6 661 252 308 65 21 chr5 9985679 9985772 -142551487 - MLT1J LTR MaLR -312 200 104 6 661 205 271 0 0 chr5 9985906 9985954 -142551305 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 6 661 866 266 131 28 chr5 9986059 9986380 -142550879 - MTEa LTR MaLR -8 371 18 6 661 873 303 97 9 chr5 9986394 9986734 -142550525 + ORR1D2 LTR MaLR 1 370 0 6 661 328 373 52 29 chr5 9986827 9987037 -142550222 - L1ME1 LINE L1 -9 6170 5956 6 661 1475 289 61 72 chr5 9987329 9988252 -142549007 - L1M2 LINE L1 -1378 4765 3849 6 661 1028 101 0 0 chr5 9988252 9988401 -142548858 - L1_Mus2 LINE L1 0 6566 6418 6 661 1475 289 61 72 chr5 9988401 9988581 -142548678 - L1M2 LINE L1 -2295 3848 3667 6 661 2674 221 40 28 chr5 9988581 9989265 -142547994 - RLTR17 LTR ERVK 0 692 1 6 661 1475 289 61 72 chr5 9989265 9989319 -142547940 - L1M2 LINE L1 -2477 3666 3619 6 661 255 294 23 45 chr5 9989481 9989613 -142547646 - Lx9 LINE L1 -630 7014 6886 6 661 1498 296 34 7 chr5 9989628 9990093 -142547166 - Lx9 LINE L1 -799 6845 6368 6 661 26 30 0 0 chr5 9990553 9990586 -142546673 + AT_rich Low_complexity Low_complexity 1 33 0 6 661 5738 223 58 9 chr5 9991988 9993267 -142543992 + Lx5 LINE L1 5709 7050 0 6 661 443 325 136 47 chr5 9994217 9994501 -142542758 - B4 SINE B4 -19 273 1 6 661 186 43 0 0 chr5 9994587 9994610 -142542649 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 661 210 283 0 0 chr5 9994892 9994945 -142542314 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 661 225 174 66 36 chr5 9995006 9995143 -142542116 + (TATAA)n Simple_repeat Simple_repeat 2 142 0 6 661 447 387 64 11 chr5 9995163 9995351 -142541908 - B4A SINE B4 -90 202 5 6 661 308 379 11 0 chr5 9995491 9995578 -142541681 + RSINE1 SINE B4 74 161 -4 6 661 34 0 0 0 chr5 9995968 9996002 -142541257 + AT_rich Low_complexity Low_complexity 1 34 0 6 661 3005 61 2 10 chr5 9996002 9996398 -142540861 - L1Md_F2 LINE L1 -2 6580 6188 6 661 372 300 22 0 chr5 9997409 9997499 -142539760 - RSINE1 SINE B4 -25 140 49 6 661 387 0 0 0 chr5 9998407 9998450 -142538809 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 6 661 22 0 0 0 chr5 9998771 9998793 -142538466 + AT_rich Low_complexity Low_complexity 1 22 0 6 661 200 185 19 0 chr5 9998882 9998936 -142538323 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 661 595 258 144 21 chr5 9999011 9999344 -142537915 - L1MA4 LINE L1 -4 6296 5923 6 661 296 158 42 0 chr5 9999347 9999442 -142537817 + (TA)n Simple_repeat Simple_repeat 2 100 0 6 661 2794 131 45 19 chr5 9999517 10000000 -142537259 - Lx LINE L1 -7 6647 6152 6 661 5341 143 51 1 chr5 10000000 10001193 -142536066 - L1_Mus4 LINE L1 -503 6151 4903 1 661 41 78 0 0 chr5 10001437 10001527 -142535732 + AT_rich Low_complexity Low_complexity 1 90 0 2 661 951 284 31 47 chr5 10001536 10001983 -142535276 - Lx9 LINE L1 0 7644 7205 3 661 691 265 99 6 chr5 10002047 10002229 -142535030 + B3 SINE B2 18 216 0 4 661 259 316 99 57 chr5 10002474 10002615 -142534644 - MLT1I LTR MaLR -206 205 59 5 661 435 304 122 43 chr5 10003495 10003846 -142533413 - L1MA9 LINE L1 -38 6274 5896 6 661 2713 73 65 0 chr5 10004159 10004531 -142532728 - MTA_Mm LTR MaLR 0 396 1 7 661 8458 55 13 3 chr5 10004531 10005618 -142531641 - MTA_Mm-int LTR MaLR 0 1098 1 7 661 2970 55 42 0 chr5 10005618 10005998 -142531261 - MTA_Mm LTR MaLR 0 396 1 7 661 525 30 15 0 chr5 10006920 10006987 -142530272 - L1Md_F2 LINE L1 -750 5832 5765 8 661 5638 64 19 16 chr5 10006987 10007735 -142529524 + L1Md_F2 LINE L1 5833 6582 0 8 661 222 116 0 0 chr5 10007747 10007790 -142529469 + (A)n Simple_repeat Simple_repeat 1 43 0 9 661 691 294 15 25 chr5 10008906 10009105 -142528154 - B3A SINE B2 0 198 2 1 661 193 53 0 73 chr5 10009219 10009260 -142527999 + (TTATA)n Simple_repeat Simple_repeat 4 41 0 1 661 481 338 37 37 chr5 10009414 10009629 -142527630 + B3A SINE B2 2 216 0 1 661 233 380 11 11 chr5 10011782 10011875 -142525384 + MER63D DNA AcHobo 274 366 -695 1 661 822 273 61 14 chr5 10012875 10013302 -142523957 + L1M3 LINE L1 4868 5314 -826 1 661 307 149 43 29 chr5 10013422 10013491 -142523768 + L1MA6 LINE L1 5812 5881 -431 1 661 23 0 0 0 chr5 10013494 10013517 -142523742 + AT_rich Low_complexity Low_complexity 1 23 0 1 661 342 182 0 0 chr5 10013517 10013583 -142523676 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 661 480 230 84 19 chr5 10013738 10013893 -142523366 + L1MA6 LINE L1 6123 6287 -13 1 661 479 358 0 28 chr5 10014607 10014785 -142522474 + RMER15 LTR ERVL 271 443 -132 1 661 237 132 0 0 chr5 10014901 10014939 -142522320 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 661 516 369 18 7 chr5 10015718 10016054 -142521205 - ERVL-E-int LTR ERVL -3449 1547 1208 2 661 249 183 13 53 chr5 10016296 10016371 -142520888 + (TCTG)n Simple_repeat Simple_repeat 4 75 0 2 661 1673 337 93 71 chr5 10016371 10017758 -142519501 - Lx8 LINE L1 -143 7330 5915 2 661 204 40 0 0 chr5 10017758 10017783 -142519476 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 661 1673 277 45 97 chr5 10017783 10018142 -142519117 - Lx8 LINE L1 -1559 5914 5533 2 661 194 293 0 0 chr5 10020387 10020428 -142516831 - L2c LINE L2 -239 3148 3108 2 661 687 25 0 0 chr5 10021238 10021319 -142515940 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 661 21 57 0 0 chr5 10022046 10022081 -142515178 + AT_rich Low_complexity Low_complexity 1 35 0 2 661 7437 74 2 19 chr5 10022081 10023161 -142514098 - L1_Mus2 LINE L1 -1 6565 5505 2 661 2009 231 20 15 chr5 10023155 10023811 -142513448 + Lx7 LINE L1 6764 7457 -187 2 661 306 0 0 0 chr5 10023820 10023854 -142513405 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 661 293 378 43 37 chr5 10023918 10024267 -142512992 + L1_Mur3 LINE L1 82 432 -7296 3 661 1001 212 61 163 chr5 10024318 10024719 -142512540 + L1_Mur3 LINE L1 859 1231 -6497 3 661 372 43 0 0 chr5 10024719 10024765 -142512494 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 3 661 2000 206 54 33 chr5 10024765 10025368 -142511891 + L1_Mur3 LINE L1 1230 1838 -4042 3 661 1338 42 0 0 chr5 10025401 10025566 -142511693 + (TC)n Simple_repeat Simple_repeat 1 165 0 3 661 3496 219 64 34 chr5 10025567 10026671 -142510588 - RMER1A Other Other -5 1025 1 3 661 413 88 9 81 chr5 10026807 10026918 -142510341 - L1Md_F2 LINE L1 -1 6581 6479 3 661 557 28 14 0 chr5 10027648 10027719 -142509540 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 3 661 26 0 0 0 chr5 10027968 10027994 -142509265 + AT_rich Low_complexity Low_complexity 1 26 0 3 661 6464 109 66 24 chr5 10029481 10030618 -142506641 - Lx3_Mus LINE L1 0 7009 5729 3 661 222 37 0 0 chr5 10030624 10030651 -142506608 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 661 3250 96 0 5 chr5 10030651 10031095 -142506164 + L1_Mur1 LINE L1 5285 5727 -159 3 661 21 0 0 0 chr5 10031918 10031939 -142505320 + AT_rich Low_complexity Low_complexity 1 21 0 4 661 249 108 0 0 chr5 10032068 10032105 -142505154 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 4 661 615 39 0 0 chr5 10033530 10033608 -142503651 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 661 687 57 0 0 chr5 10033625 10033713 -142503546 + (GA)n Simple_repeat Simple_repeat 2 89 0 4 661 240 122 0 0 chr5 10033713 10033754 -142503505 + (CCA)n Simple_repeat Simple_repeat 1 41 0 4 661 305 330 159 22 chr5 10034151 10034276 -142502983 + B4A SINE B4 11 143 -149 4 661 552 30 0 0 chr5 10034276 10034342 -142502917 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 661 264 330 159 22 chr5 10034342 10034442 -142502817 + B4 SINE B4 144 267 -25 4 661 2406 202 45 8 chr5 10034761 10035270 -142501989 - RLTR11A LTR ERVK 0 528 1 4 661 266 306 27 20 chr5 10035439 10035485 -142501774 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 4 661 1056 109 11 6 chr5 10035485 10035661 -142501598 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 4 661 266 306 27 20 chr5 10035661 10035764 -142501495 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 5 661 249 108 0 0 chr5 10035780 10035817 -142501442 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 5 661 503 338 75 51 chr5 10035885 10036216 -142501043 - MLT2B1 LTR ERVL -174 346 8 5 661 209 219 35 17 chr5 10036701 10036817 -142500442 + (TA)n Simple_repeat Simple_repeat 2 119 0 5 661 444 37 0 0 chr5 10036818 10036872 -142500387 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 5 661 217 282 14 14 chr5 10038066 10038138 -142499121 + CT-rich Low_complexity Low_complexity 4 75 0 5 661 638 281 151 30 chr5 10038415 10038784 -142498475 + MLT2C1 LTR ERVL 24 417 -47 5 661 303 71 0 0 chr5 10038784 10038826 -142498433 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 5 661 456 337 111 55 chr5 10038826 10038871 -142498388 + MLT2C1 LTR ERVL 418 461 -3 5 661 213 327 110 32 chr5 10038916 10039071 -142498188 - MIR SINE MIR -30 232 66 5 661 269 269 115 0 chr5 10042550 10042628 -142494631 + PB1D7 SINE Alu 19 105 -15 5 661 4016 206 46 13 chr5 10042737 10043309 -142493950 - L1_Mur3 LINE L1 -3238 2642 2065 6 661 243 0 0 0 chr5 10043309 10043336 -142493923 + (TGG)n Simple_repeat Simple_repeat 1 27 0 6 661 4016 206 46 13 chr5 10043336 10043714 -142493545 - L1_Mur3 LINE L1 -3816 2064 1661 6 661 1056 83 0 0 chr5 10043715 10043859 -142493400 + L1_Mus1 LINE L1 6424 6567 0 6 661 228 81 0 0 chr5 10043869 10043906 -142493353 + L1_Mur3 LINE L1 3038 3074 -2806 6 661 6538 115 5 92 chr5 10043903 10045473 -142491786 + L1_Mm LINE L1 4269 5586 -297 6 661 8052 53 0 0 chr5 10045473 10046469 -142490790 + L1Md_T LINE L1 5587 6582 0 6 661 6538 24 0 3 chr5 10046469 10046485 -142490774 + L1_Mm LINE L1 5587 5602 -281 6 661 1732 210 182 0 chr5 10046509 10046971 -142490288 + L1_Mur3 LINE L1 5100 5645 -235 6 661 958 144 29 35 chr5 10046973 10047146 -142490113 + RLTR22_Mur LTR ERVK 1669 1840 -8 6 661 29 28 0 0 chr5 10047396 10047432 -142489827 + AT_rich Low_complexity Low_complexity 1 36 0 6 661 1004 202 15 15 chr5 10047525 10047731 -142489528 + ORR1B1 LTR MaLR 5 210 -184 6 661 1200 201 17 34 chr5 10047731 10048025 -142489234 - L1VL4 LINE L1 -5669 633 345 7 661 324 285 97 0 chr5 10048075 10048219 -142489040 - L1MC LINE L1 -985 5161 5004 7 661 1985 305 76 87 chr5 10048314 10048765 -142488494 - Lx6 LINE L1 -18 7032 6571 7 661 186 71 0 0 chr5 10048765 10048793 -142488466 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 661 2070 243 61 76 chr5 10048793 10049874 -142487385 - Lx6 LINE L1 -480 6570 5531 7 661 3110 224 26 4 chr5 10049872 10050675 -142486584 - Lx6 LINE L1 -2405 3475 2655 7 661 394 297 60 48 chr5 10050789 10051040 -142486219 - L1MC LINE L1 -1385 4761 4508 7 661 1230 199 95 34 chr5 10051616 10051912 -142485347 + RLTR46 LTR ERVK 1 314 -6 7 661 38 39 0 0 chr5 10052602 10052654 -142484605 + AT_rich Low_complexity Low_complexity 1 52 0 7 661 3180 186 29 85 chr5 10053093 10053512 -142483747 + RMER6D LTR ERVK 1 369 -351 7 661 651 13 0 0 chr5 10053512 10053588 -142483671 + (TG)n Simple_repeat Simple_repeat 1 76 0 7 661 3180 186 29 85 chr5 10053588 10053931 -142483328 + RMER6D LTR ERVK 370 720 0 7 661 659 86 34 0 chr5 10054068 10054185 -142483074 + (TCTA)n Simple_repeat Simple_repeat 4 124 0 7 661 192 77 0 0 chr5 10056275 10056301 -142480958 + (CTG)n Simple_repeat Simple_repeat 1 26 0 7 661 583 300 78 26 chr5 10056363 10056420 -142480839 - B4A SINE B4 -8 284 219 8 661 561 55 0 0 chr5 10056420 10056493 -142480766 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 661 583 300 78 26 chr5 10056493 10056705 -142480554 - B4A SINE B4 -74 218 1 8 661 222 37 0 0 chr5 10056820 10056847 -142480412 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 8 661 531 355 108 32 chr5 10056882 10057345 -142479914 - L1MC4 LINE L1 -5240 975 478 8 661 269 275 85 30 chr5 10057495 10057660 -142479599 - L1MC4 LINE L1 -5780 435 262 8 661 240 396 19 0 chr5 10058451 10058557 -142478702 + MER58A DNA MER1_type 7 114 -110 8 661 521 30 15 0 chr5 10058958 10059025 -142478234 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 8 661 281 311 28 19 chr5 10059062 10059170 -142478089 - B3 SINE B2 -30 186 78 8 661 2349 108 0 9 chr5 10059176 10059511 -142477748 - L1_Mm LINE L1 -10 5873 5542 8 661 4163 79 20 0 chr5 10059511 10060057 -142477202 + L1_Mus1 LINE L1 6009 6565 -2 8 661 393 22 0 0 chr5 10060196 10060242 -142477017 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 661 476 355 48 5 chr5 10060364 10060551 -142476708 - Lx8 LINE L1 -166 7307 7113 9 661 15965 192 71 37 chr5 10061667 10065816 -142471443 + Lx2A1 LINE L1 930 5266 -620 9 661 766 111 26 0 chr5 10065816 10065933 -142471326 + PB1D9 SINE Alu 1 120 0 9 661 15965 194 78 40 chr5 10065933 10066246 -142471013 + Lx2A1 LINE L1 5267 5552 -334 9 661 2077 148 13 16 chr5 10066243 10066620 -142470639 + Lx2A1 LINE L1 5861 6236 -772 9 661 444 111 0 0 chr5 10068099 10068180 -142469079 + (TC)n Simple_repeat Simple_repeat 1 81 0 9 661 312 111 0 0 chr5 10068180 10068234 -142469025 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 661 200 358 12 0 chr5 10068300 10068381 -142468878 - MER5A DNA MER1_type -96 93 12 9 661 2868 30 0 6 chr5 10070697 10071036 -142466223 + IAPLTR1a_Mm LTR ERVK 1 337 0 9 661 55116 21 14 7 chr5 10071038 10077425 -142459834 + IAPEz-int LTR ERVK 3 6481 0 9 661 2868 30 0 6 chr5 10077425 10077764 -142459495 + IAPLTR1a_Mm LTR ERVK 1 337 0 9 661 251 279 38 0 chr5 10079225 10079304 -142457955 - L1M2 LINE L1 -4358 2491 2410 9 661 673 266 88 0 chr5 10079384 10079576 -142457683 - B3 SINE B2 -5 211 3 9 661 250 238 22 0 chr5 10079585 10079697 -142457562 - L1_Mm LINE L1 -4167 1713 1598 9 661 180 97 0 0 chr5 10079827 10079858 -142457401 + (TTTTTA)n Simple_repeat Simple_repeat 5 35 0 1 661 367 165 0 12 chr5 10080071 10080157 -142457102 - Lx2 LINE L1 0 7008 6924 1 661 5323 140 54 5 chr5 10080157 10081090 -142456169 - Lx2A LINE L1 -32 6976 5999 1 661 15728 168 45 9 chr5 10081128 10081145 -142456114 - L1_Mur1 LINE L1 -1285 4601 4587 1 661 1087 232 0 9 chr5 10081145 10081358 -142455901 + B3 SINE B2 3 213 -3 1 661 15728 168 45 9 chr5 10081358 10084549 -142452710 - L1_Mur1 LINE L1 -1300 4586 1280 1 661 4399 130 20 12 chr5 10084541 10085233 -142452026 - Lx2 LINE L1 -259 6738 6041 1 661 642 93 0 0 chr5 10085232 10085331 -142451928 - Lx2 LINE L1 -211 5672 5574 1 661 429 101 25 0 chr5 10085418 10085497 -142451762 - L1Md_F2 LINE L1 -3 6579 6499 1 661 189 74 0 0 chr5 10085779 10085806 -142451453 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 661 441 54 0 0 chr5 10085806 10085861 -142451398 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 661 875 173 80 99 chr5 10085900 10086112 -142451147 + ORR1C2 LTR MaLR 177 384 0 1 661 1872 193 60 18 chr5 10086601 10087001 -142450258 + MTC LTR MaLR 1 417 -4 1 661 33 0 0 0 chr5 10087120 10087153 -142450106 + AT_rich Low_complexity Low_complexity 1 33 0 1 661 3681 34 2 0 chr5 10087165 10087605 -142449654 + L1Md_T LINE L1 5883 6323 -259 1 661 1124 83 0 0 chr5 10087830 10087975 -142449284 + B1_Mus2 SINE Alu 3 147 0 1 661 282 29 0 0 chr5 10087982 10088017 -142449242 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 661 25 31 0 0 chr5 10088131 10088163 -142449096 + AT_rich Low_complexity Low_complexity 1 32 0 1 661 317 105 0 50 chr5 10089017 10089077 -142448182 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 661 1036 116 0 0 chr5 10089182 10089328 -142447931 + B1_Mus1 SINE Alu 3 148 0 1 661 258 237 50 40 chr5 10089742 10089843 -142447416 - RMER1C Other Other -19 1323 1222 1 661 1857 289 72 91 chr5 10089838 10090688 -142446571 - RMER1C Other Other -60 1282 449 1 661 515 360 64 28 chr5 10091441 10091798 -142445461 + Lx8 LINE L1 7104 7473 0 1 661 307 347 107 42 chr5 10091807 10092096 -142445163 - L1ME1 LINE L1 -114 6065 5758 1 661 336 291 22 22 chr5 10092121 10092300 -142444959 - L1ME1 LINE L1 -492 5687 5509 1 661 344 326 31 62 chr5 10092303 10092496 -142444763 - MER20 DNA MER1_type -2 217 31 1 662 9416 85 14 5 chr5 10093572 10095620 -142441639 + L1_Mus1 LINE L1 4509 6654 0 1 662 22 56 0 0 chr5 10095747 10095783 -142441476 + AT_rich Low_complexity Low_complexity 1 36 0 1 662 28 61 0 0 chr5 10095807 10095856 -142441403 + AT_rich Low_complexity Low_complexity 1 49 0 1 662 4036 253 54 13 chr5 10096262 10097285 -142439974 - Lx5 LINE L1 -1 7049 5985 1 662 3028 193 41 4 chr5 10097275 10098060 -142439199 + Lx5 LINE L1 5155 5987 -1063 1 662 237 262 38 0 chr5 10098871 10098951 -142438308 - L1M5 LINE L1 -659 5581 5499 1 662 279 211 0 0 chr5 10099260 10099350 -142437909 + CT-rich Low_complexity Low_complexity 1 90 0 1 662 602 312 82 30 chr5 10099366 10099597 -142437662 - B4A SINE B4 -39 253 11 1 662 378 0 0 0 chr5 10099921 10099963 -142437296 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 662 360 281 0 53 chr5 10100142 10100236 -142437023 - B4A SINE B4 -196 96 8 1 662 235 212 14 96 chr5 10100329 10100402 -142436857 + ID2 SINE ID 3 69 -14 1 662 322 307 48 12 chr5 10100976 10101141 -142436118 - Lx7 LINE L1 -16 7680 7510 1 662 477 0 0 0 chr5 10101159 10101212 -142436047 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 662 333 0 0 0 chr5 10101212 10101248 -142436011 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 662 284 167 0 40 chr5 10101264 10101314 -142435945 + Lx7 LINE L1 7060 7107 -589 1 662 251 325 38 0 chr5 10101347 10101427 -142435832 + Lx7 LINE L1 7203 7285 -411 1 662 21 0 0 0 chr5 10103002 10103023 -142434236 + AT_rich Low_complexity Low_complexity 1 21 0 1 662 204 56 27 27 chr5 10103898 10103935 -142433324 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 1 662 753 189 0 0 chr5 10104135 10104294 -142432965 + CT-rich Low_complexity Low_complexity 4 162 0 1 662 1248 51 11 22 chr5 10104295 10104477 -142432782 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 662 203 195 0 25 chr5 10104502 10104581 -142432678 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 1 662 4539 210 110 34 chr5 10104627 10105234 -142432025 + L1_Mur3 LINE L1 1771 2471 -3409 1 662 1053 94 0 0 chr5 10105234 10105372 -142431887 + B1_Mm SINE Alu 1 138 -9 1 662 954 47 0 0 chr5 10105372 10105500 -142431759 + (CAAAC)n Simple_repeat Simple_repeat 2 129 0 1 662 4539 210 110 34 chr5 10105500 10106286 -142430973 + L1_Mur3 LINE L1 2472 3270 -2610 1 662 1293 227 57 37 chr5 10106292 10106677 -142430582 + RMER19B LTR ERVK 156 671 -231 1 662 1669 235 72 38 chr5 10106691 10107244 -142430015 + L1_Mur3 LINE L1 4837 5408 -472 1 662 1062 112 6 11 chr5 10107245 10107425 -142429834 + (TTTTC)n Simple_repeat Simple_repeat 1 179 0 1 662 1297 122 116 18 chr5 10107458 10107683 -142429576 - Lx LINE L1 -7 6647 6401 1 662 1463 183 138 30 chr5 10107680 10108041 -142429218 + L1_Mur3 LINE L1 5405 5804 -76 1 662 646 194 53 66 chr5 10108045 10108237 -142429022 + RMER19C LTR ERVK 1 227 -384 1 662 1145 231 61 27 chr5 10108237 10108845 -142428414 + Lx7 LINE L1 6789 7505 -191 1 662 26 0 0 0 chr5 10109210 10109236 -142428023 + AT_rich Low_complexity Low_complexity 1 26 0 1 662 3432 90 100 4 chr5 10109375 10109877 -142427382 - L1_Mus2 LINE L1 0 6566 6017 1 662 435 38 0 0 chr5 10109913 10109966 -142427293 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 662 510 131 0 0 chr5 10109968 10110067 -142427192 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 662 256 206 31 8 chr5 10110416 10110543 -142426716 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 1 662 285 212 23 34 chr5 10110578 10110666 -142426593 + Lx9 LINE L1 7558 7644 0 1 662 34 0 0 0 chr5 10111408 10111442 -142425817 + AT_rich Low_complexity Low_complexity 1 34 0 1 662 241 203 29 14 chr5 10111508 10111578 -142425681 - L1_Mur2 LINE L1 -825 5055 4985 1 662 354 265 213 5 chr5 10111601 10111798 -142425461 - L1_Mur2 LINE L1 -965 4915 4678 1 662 305 69 226 65 chr5 10111815 10111877 -142425382 - B1_Mus2 SINE Alu 0 147 76 1 662 228 259 52 0 chr5 10111827 10111885 -142425374 - B4 SINE B4 -74 218 158 1 662 593 251 25 51 chr5 10111901 10112136 -142425123 - L1_Mur2 LINE L1 -1210 4667 4439 1 662 1325 13 0 0 chr5 10112347 10112500 -142424759 - L1Md_A LINE L1 -500 6082 5930 1 662 4532 2 0 0 chr5 10112501 10113001 -142424258 + L1Md_A LINE L1 6083 6582 0 1 662 5598 35 32 1 chr5 10113823 10114504 -142422755 + L1Md_A LINE L1 5878 6579 -3 1 662 22 35 0 0 chr5 10115417 10115446 -142421813 + AT_rich Low_complexity Low_complexity 1 29 0 1 662 33 43 0 41 chr5 10115895 10115968 -142421291 + AT_rich Low_complexity Low_complexity 1 70 0 1 662 1244 211 82 83 chr5 10118942 10119499 -142417760 + L1_Mur3 LINE L1 1190 1743 -4137 1 662 237 65 0 0 chr5 10119499 10119530 -142417729 + (CAAAG)n Simple_repeat Simple_repeat 3 33 0 1 662 1244 215 72 105 chr5 10119530 10119611 -142417648 + L1_Mur3 LINE L1 1744 1824 -4056 1 662 4707 226 43 78 chr5 10119610 10121151 -142416108 - Lx4B LINE L1 -7 7051 5589 1 662 880 208 6 0 chr5 10121165 10121324 -142415935 - Lx5 LINE L1 -506 6544 6385 1 662 9654 176 27 21 chr5 10121322 10123547 -142413712 - Lx5 LINE L1 -862 6188 3956 1 662 457 311 8 153 chr5 10123547 10123782 -142413477 + MTE2a LTR MaLR 127 327 -52 1 662 209 171 0 0 chr5 10124195 10124230 -142413029 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 662 249 83 0 0 chr5 10124416 10124452 -142412807 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 662 1083 103 0 0 chr5 10124452 10124597 -142412662 - B1_Mus1 SINE Alu -2 146 2 1 662 1535 187 75 28 chr5 10124597 10124906 -142412353 - ORR1B2 LTR MaLR -8 359 34 1 662 381 324 82 46 chr5 10125914 10126108 -142411151 + B4 SINE B4 16 216 -76 1 662 6472 105 20 62 chr5 10126459 10127504 -142409755 + Lx3_Mus LINE L1 6001 7001 -8 1 662 219 235 30 30 chr5 10127508 10127609 -142409650 + A-rich Low_complexity Low_complexity 1 101 0 1 662 378 302 26 11 chr5 10127788 10127979 -142409280 + L1_Rod LINE L1 938 1131 -6477 1 662 27 0 0 0 chr5 10128199 10128226 -142409033 + AT_rich Low_complexity Low_complexity 1 27 0 1 662 314 321 48 64 chr5 10128235 10128436 -142408823 + L1_Rod LINE L1 2581 2775 -3072 1 662 1090 90 0 20 chr5 10128436 10128584 -142408675 - B1_Mus2 SINE Alu -1 146 2 1 662 314 321 48 64 chr5 10128584 10128802 -142408457 + L1_Rod LINE L1 2776 2993 -2854 1 662 264 334 35 30 chr5 10128803 10129142 -142408117 + L1_Rod LINE L1 2821 3161 -2686 1 662 204 111 0 0 chr5 10129186 10129222 -142408037 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 662 528 236 119 6 chr5 10129308 10129450 -142407809 - ORR1B1 LTR MaLR -221 173 3 1 662 258 195 48 12 chr5 10129651 10129734 -142407525 + T-rich Low_complexity Low_complexity 1 86 0 1 662 23 33 0 0 chr5 10129856 10129886 -142407373 + AT_rich Low_complexity Low_complexity 1 30 0 1 662 516 308 0 0 chr5 10130003 10130172 -142407087 - L1_Mur3 LINE L1 -2058 3822 3654 1 662 1741 173 54 6 chr5 10130207 10130538 -142406721 + RLTR15 LTR ERVK 10 356 -3 1 662 877 315 61 7 chr5 10130640 10131191 -142406068 + L1_Mur3 LINE L1 3440 4033 -1850 1 662 12796 169 57 26 chr5 10131189 10135462 -142401797 + Lx2 LINE L1 562 5245 -635 1 662 1113 76 7 0 chr5 10135462 10135607 -142401652 + B1_Mus1 SINE Alu 1 146 -2 1 662 252 0 0 0 chr5 10135607 10135635 -142401624 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1 662 11341 148 55 10 chr5 10135635 10137382 -142399877 + Lx2 LINE L1 5246 6996 -1 1 662 853 301 75 57 chr5 10137414 10138066 -142399193 + L1_Mur3 LINE L1 4010 4701 -1439 1 662 21 0 0 0 chr5 10138408 10138429 -142398830 + AT_rich Low_complexity Low_complexity 1 21 0 1 662 435 194 9 44 chr5 10138440 10138553 -142398706 + ORR1A2 LTR MaLR 3 111 -235 1 662 6865 62 1 1 chr5 10138554 10139426 -142397833 + L1Md_F2 LINE L1 4714 5585 -298 1 662 8159 43 2 0 chr5 10139427 10140408 -142396851 + L1Md_F2 LINE L1 5587 6569 -13 1 662 7691 5 0 0 chr5 10140431 10141306 -142395953 + L1Md_T LINE L1 5728 6582 0 1 662 1543 133 9 0 chr5 10141306 10141539 -142395720 + ORR1A2 LTR MaLR 93 327 0 1 662 23 101 0 0 chr5 10141556 10141635 -142395624 + AT_rich Low_complexity Low_complexity 1 79 0 1 662 609 268 0 0 chr5 10141652 10141775 -142395484 - MTE2b LTR MaLR -252 127 5 1 662 736 280 113 22 chr5 10142113 10142343 -142394916 - MTEa LTR MaLR -128 251 1 1 662 636 335 32 11 chr5 10143815 10144093 -142393166 + Lx8 LINE L1 6745 7028 -445 1 662 1198 29 0 0 chr5 10144478 10144617 -142392642 - B1_Mus2 SINE Alu -7 140 2 1 662 1064 304 80 6 chr5 10144704 10145055 -142392204 + MTD LTR MaLR 20 396 -23 1 662 25 31 0 0 chr5 10145680 10145712 -142391547 + AT_rich Low_complexity Low_complexity 1 32 0 1 662 207 0 0 0 chr5 10146021 10146044 -142391215 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 2 662 212 226 16 0 chr5 10146535 10146597 -142390662 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 662 21 57 0 0 chr5 10147809 10147844 -142389415 + AT_rich Low_complexity Low_complexity 1 35 0 2 662 1349 195 4 12 chr5 10147848 10148102 -142389157 - Lx4A LINE L1 -16 7042 6791 2 662 265 143 0 0 chr5 10148102 10148144 -142389115 - Lx4A LINE L1 -365 6693 6652 2 662 623 198 41 0 chr5 10148209 10148330 -142388929 - ORR1C2 LTR MaLR 0 384 259 2 662 499 248 165 30 chr5 10152542 10152675 -142384584 - ORR1C2 LTR MaLR -120 264 114 2 662 438 139 0 0 chr5 10152677 10152749 -142384510 + (T)n Simple_repeat Simple_repeat 1 72 0 2 662 244 250 26 53 chr5 10152751 10152827 -142384432 - ORR1C2 LTR MaLR -263 111 38 2 662 258 245 18 54 chr5 10152902 10153014 -142384245 - L1MA7 LINE L1 -128 6163 6056 2 662 323 264 83 0 chr5 10153282 10153403 -142383856 + MER53 DNA hAT 5 135 -58 2 662 246 287 115 57 chr5 10154032 10154154 -142383105 - MLT1F LTR MaLR -141 407 279 2 662 21 0 0 0 chr5 10156608 10156629 -142380630 + AT_rich Low_complexity Low_complexity 1 21 0 2 662 1605 215 44 0 chr5 10156803 10157142 -142380117 + ORR1C1 LTR MaLR 19 372 -6 2 662 334 64 0 21 chr5 10157145 10157193 -142380066 - ORR1A3 LTR MaLR -8 318 272 2 662 7263 131 7 15 chr5 10157193 10158726 -142378533 - Lx LINE L1 0 6654 5145 2 662 315 0 0 0 chr5 10158753 10158788 -142378471 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 2 662 356 24 0 0 chr5 10158788 10158830 -142378429 - B2_Mm1a SINE B2 -30 163 122 2 662 673 83 0 0 chr5 10158831 10158925 -142378334 - L1Md_F2 LINE L1 -303 6279 6196 2 662 301 260 105 74 chr5 10158917 10159241 -142378018 - L1M3 LINE L1 -1961 4179 3846 2 662 368 299 81 34 chr5 10159397 10159546 -142377713 - B4A SINE B4 -23 269 114 2 662 824 209 84 46 chr5 10159571 10159832 -142377427 - L1_Mus4 LINE L1 -2 6634 6364 2 662 2127 134 85 0 chr5 10159834 10160199 -142377060 - Lx2 LINE L1 -833 6164 5769 2 662 1503 211 33 0 chr5 10160198 10160529 -142376730 + L1_Mur2 LINE L1 4850 5191 -686 2 662 3132 202 32 43 chr5 10160544 10161394 -142375865 + RMER3D-int LTR ERVK 2002 2841 -1 2 662 2947 84 17 0 chr5 10161395 10161809 -142375450 + BGLII LTR ERVK 1 421 0 2 662 1869 156 3 0 chr5 10161834 10162141 -142375118 + Lx2 LINE L1 5255 5562 -321 2 662 2464 136 25 96 chr5 10162141 10162660 -142374599 + RLTR45 LTR ERVK 1 482 0 2 662 3780 94 49 7 chr5 10162660 10163208 -142374051 + RLTR45-int LTR ERVK 1 571 -6673 2 662 1115 42 0 40 chr5 10163973 10164123 -142373136 + RLTR45-int LTR ERVK 549 692 -6552 2 662 1633 70 28 0 chr5 10164480 10164693 -142372566 + RLTR45-int LTR ERVK 692 910 -6334 2 662 1126 121 12 0 chr5 10164813 10164986 -142372273 + RLTR45-int LTR ERVK 913 1087 -6157 2 662 273 59 0 0 chr5 10164989 10165023 -142372236 + RLTR45 LTR ERVK 449 482 0 2 662 1245 123 0 0 chr5 10165025 10165229 -142372030 + Lx2 LINE L1 5559 5762 -121 2 662 222 148 0 0 chr5 10165229 10165283 -142371976 + (A)n Simple_repeat Simple_repeat 1 54 0 2 662 281 302 90 45 chr5 10165284 10165395 -142371864 - B4A SINE B4 -173 119 4 2 662 497 307 65 23 chr5 10165467 10165774 -142371485 + L1M3 LINE L1 4744 5063 -1077 2 662 324 0 0 0 chr5 10165790 10165826 -142371433 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 662 234 156 0 0 chr5 10165841 10165886 -142371373 + GA-rich Low_complexity Low_complexity 2 46 0 2 662 392 157 104 0 chr5 10166295 10166410 -142370849 + Lx9 LINE L1 7518 7644 0 2 662 295 288 108 14 chr5 10166419 10166567 -142370692 + L1M3 LINE L1 5657 5818 -494 2 662 540 0 0 0 chr5 10166589 10166649 -142370610 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 662 579 241 0 0 chr5 10167227 10167339 -142369920 + B3 SINE B2 24 135 -81 2 662 182 208 19 0 chr5 10167394 10167447 -142369812 + GA-rich Low_complexity Low_complexity 1 54 0 2 662 251 233 54 14 chr5 10167711 10167785 -142369474 - L1M5 LINE L1 -823 5621 5545 2 662 231 36 0 0 chr5 10167847 10167875 -142369384 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 662 493 346 19 12 chr5 10167876 10168037 -142369222 - B3A SINE B2 -36 162 1 2 662 21 36 0 0 chr5 10168074 10168102 -142369157 + AT_rich Low_complexity Low_complexity 1 28 0 2 662 231 177 16 0 chr5 10168283 10168345 -142368914 - Lx9 LINE L1 0 7644 7582 2 662 204 40 0 0 chr5 10170209 10170234 -142367025 + (CATTT)n Simple_repeat Simple_repeat 5 29 0 2 662 324 191 64 20 chr5 10171069 10171180 -142366079 + MTC LTR MaLR 271 408 -13 2 662 23 86 0 0 chr5 10171428 10171486 -142365773 + AT_rich Low_complexity Low_complexity 1 58 0 2 662 2352 206 35 35 chr5 10172044 10172616 -142364643 + RMER6C LTR ERVK 111 682 -8 2 662 383 286 91 48 chr5 10172616 10172825 -142364434 - L1M5 LINE L1 -710 5530 5313 2 662 231 36 0 0 chr5 10174071 10174099 -142363160 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 662 31031 95 11 5 chr5 10174214 10179467 -142357792 + L1Md_F2 LINE L1 302 5585 -298 2 662 6964 67 52 12 chr5 10179468 10180425 -142356834 + L1Md_F2 LINE L1 5587 6581 -1 2 662 254 182 15 0 chr5 10180680 10180746 -142356513 + CT-rich Low_complexity Low_complexity 2 68 0 2 662 273 319 34 17 chr5 10181619 10181737 -142355522 - LTR40b LTR ERVL -25 437 318 2 662 1152 208 82 26 chr5 10182564 10182904 -142354355 + RLTR10D LTR ERVK 1 359 0 2 662 256 289 33 0 chr5 10182904 10182994 -142354265 + Charlie15a DNA MER1_type 115 207 -17 2 662 30 0 0 0 chr5 10183270 10183300 -142353959 + AT_rich Low_complexity Low_complexity 1 30 0 2 662 468 302 43 12 chr5 10183632 10183793 -142353466 - Lx8 LINE L1 -350 7123 6958 2 662 2037 210 106 49 chr5 10183847 10184377 -142352882 - RLTR20B2 LTR ERVK 0 560 1 2 662 1966 181 176 7 chr5 10184397 10185221 -142352038 - MYSERV16_I-int LTR ERVK -22 2304 1342 2 662 244 240 129 10 chr5 10185223 10185324 -142351935 - RLTR20B2 LTR ERVK -447 113 1 2 662 594 328 28 32 chr5 10185406 10185637 -142351622 - Lx8 LINE L1 -984 6489 6254 2 662 2723 28 61 0 chr5 10185637 10185963 -142351296 + ORR1A0 LTR MaLR 1 346 0 2 662 13862 53 14 1 chr5 10185963 10187731 -142349528 + ORR1A0-int LTR MaLR 2 1792 0 2 662 2943 35 0 0 chr5 10187731 10188077 -142349182 + ORR1A0 LTR MaLR 1 346 0 2 662 594 328 28 32 chr5 10188077 10188126 -142349133 - Lx8 LINE L1 -1220 6253 6210 2 662 21 0 0 0 chr5 10188142 10188163 -142349096 + AT_rich Low_complexity Low_complexity 1 21 0 2 662 357 300 10 0 chr5 10189370 10189470 -142347789 - Lx8 LINE L1 -1123 6350 6250 2 662 670 274 124 104 chr5 10189473 10189819 -142347440 + ORR1E LTR MaLR 7 359 0 2 662 5887 75 20 30 chr5 10189827 10190657 -142346602 + RLTR13B2 LTR ERVK 1 822 0 2 662 21 57 0 0 chr5 10191097 10191132 -142346127 + AT_rich Low_complexity Low_complexity 1 35 0 2 662 445 314 44 99 chr5 10191330 10191602 -142345657 + MTE2b LTR MaLR 12 268 -111 2 662 384 276 11 0 chr5 10191605 10191692 -142345567 - Lx5 LINE L1 -307 6743 6656 2 662 843 122 0 0 chr5 10191694 10191825 -142345434 + (TTCC)n Simple_repeat Simple_repeat 2 132 0 2 662 607 105 0 37 chr5 10191827 10191936 -142345323 - Lx LINE L1 -16 6638 6534 2 662 1757 262 41 114 chr5 10191979 10192582 -142344677 - RMER13B LTR ERVK -107 801 225 2 662 549 0 0 0 chr5 10192582 10192643 -142344616 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 662 1757 267 43 109 chr5 10192643 10192916 -142344343 - RMER13B LTR ERVK -684 224 2 2 662 5655 149 25 6 chr5 10192916 10193966 -142343293 - Lx LINE L1 -136 6518 5451 2 662 450 0 0 0 chr5 10194284 10194334 -142342925 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2 662 24 0 0 0 chr5 10195203 10195227 -142342032 + AT_rich Low_complexity Low_complexity 1 24 0 2 662 488 45 15 0 chr5 10196372 10196439 -142340820 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 662 23 101 0 0 chr5 10196717 10196796 -142340463 + AT_rich Low_complexity Low_complexity 1 79 0 2 662 3821 211 71 7 chr5 10196871 10197677 -142339582 - RMER13A LTR ERVK 0 860 4 2 662 705 295 32 107 chr5 10197944 10198225 -142339034 + RMER19C LTR ERVK 220 479 -132 2 662 4253 87 7 8 chr5 10198225 10198818 -142338441 - L1_Mus4 LINE L1 -3 6633 6042 2 662 325 169 23 105 chr5 10198832 10198918 -142338341 + HAL1-3A_ME LINE L1 1976 2054 -804 2 662 1164 193 116 23 chr5 10199033 10199435 -142337824 - RMER17C LTR ERVK -519 439 16 2 662 443 272 167 40 chr5 10200053 10200379 -142336880 + RLTR9A LTR ERVK 1 437 0 2 662 1911 113 40 19 chr5 10200487 10200811 -142336448 + IAPEY_LTR LTR ERVK 55 385 0 2 662 416 315 115 15 chr5 10200815 10201015 -142336244 + B4A SINE B4 73 292 0 2 662 224 59 29 0 chr5 10201023 10201057 -142336202 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 662 869 99 92 0 chr5 10201414 10201545 -142335714 - B1_Mus1 SINE Alu 0 148 6 2 662 1041 57 50 0 chr5 10201780 10201920 -142335339 - B1_Mm SINE Alu 0 147 1 2 662 512 344 13 0 chr5 10204367 10204521 -142332738 + Lx8 LINE L1 7083 7238 -235 2 662 4587 76 0 0 chr5 10204553 10205144 -142332115 - L1_Mus1 LINE L1 0 6567 5977 2 662 2898 87 3 0 chr5 10205147 10205527 -142331732 + L1_Mm LINE L1 5421 5801 -82 2 662 294 335 116 13 chr5 10205526 10205750 -142331509 + Lx8 LINE L1 7225 7471 -2 2 662 421 57 17 87 chr5 10206439 10206611 -142330648 + T-rich Low_complexity Low_complexity 1 160 0 2 662 1078 116 0 0 chr5 10206658 10206805 -142330454 - B1_Mus1 SINE Alu 0 148 2 2 662 915 284 69 41 chr5 10206834 10207175 -142330084 + ORR1E LTR MaLR 1 371 -3 2 662 267 214 0 136 chr5 10207519 10207600 -142329659 + B3A SINE B2 122 191 -7 2 662 214 132 0 36 chr5 10207813 10207868 -142329391 + A-rich Low_complexity Low_complexity 2 54 0 2 662 8198 53 1 1 chr5 10208338 10209967 -142327292 - L1Md_F2 LINE L1 0 6582 4955 2 662 35733 46 5 11 chr5 10210674 10216107 -142321152 + L1Md_T LINE L1 188 5586 -297 2 662 8214 44 0 0 chr5 10216107 10217101 -142320158 + L1Md_T LINE L1 5587 6580 -2 2 662 2970 115 41 31 chr5 10217984 10218470 -142318789 - Lx3C LINE L1 0 6976 6486 2 662 23 86 0 0 chr5 10218735 10218793 -142318466 + AT_rich Low_complexity Low_complexity 1 58 0 2 662 1241 298 71 57 chr5 10218912 10219818 -142317441 + L1MA8 LINE L1 5255 6172 -119 2 662 520 290 48 14 chr5 10219892 10220039 -142317220 + RSINE1 SINE B4 14 165 0 2 662 240 208 14 27 chr5 10221057 10221131 -142316128 + (TTA)n Simple_repeat Simple_repeat 1 73 0 2 662 180 0 0 0 chr5 10221175 10221195 -142316064 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 662 414 57 0 0 chr5 10222000 10222053 -142315206 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 662 340 235 101 43 chr5 10222845 10222983 -142314276 - L1MD2 LINE L1 -406 5953 5808 2 662 463 196 67 26 chr5 10223386 10223513 -142313746 + MT2B2 LTR ERVL 2 123 -478 2 82 667 235 49 54 chr5 10223572 10223812 -142313447 + MT2B2 LTR ERVL 243 584 0 2 663 597 215 79 82 chr5 10223846 10224176 -142313083 + Lx9 LINE L1 7316 7644 0 3 663 27 81 0 0 chr5 10225688 10225750 -142311509 + AT_rich Low_complexity Low_complexity 1 62 0 3 663 9793 58 6 54 chr5 10225976 10228250 -142309009 - L1Md_F2 LINE L1 -2 6580 4442 3 663 1275 263 33 0 chr5 10228595 10228926 -142308333 - RMER15 LTR ERVL -2 573 232 3 663 249 300 88 35 chr5 10228953 10229067 -142308192 - RMER15 LTR ERVL -434 141 22 3 663 2889 171 105 37 chr5 10229228 10229902 -142307357 - RMER6D LTR ERVK 0 720 1 3 663 531 178 0 0 chr5 10230052 10230153 -142307106 + (TA)n Simple_repeat Simple_repeat 1 101 0 3 663 540 233 29 10 chr5 10230158 10230262 -142306997 - ID_B1 SINE B4 -15 209 104 3 663 1828 229 223 4 chr5 10230299 10230855 -142306404 - RLTR33 LTR ERVK 0 678 1 3 663 260 323 63 21 chr5 10231681 10231776 -142305483 + ORR1E LTR MaLR 1 99 -260 3 663 821 103 150 8 chr5 10232445 10232572 -142304687 + B1_Mus1 SINE Alu 2 146 -2 3 663 6586 94 2 14 chr5 10232573 10233727 -142303532 - L1_Mus1 LINE L1 -572 5995 4850 3 663 1831 155 3 7 chr5 10233857 10234162 -142303097 + ORR1A2 LTR MaLR 24 327 0 3 663 1017 224 123 85 chr5 10234167 10234484 -142302775 + ORR1A4 LTR MaLR 1 329 0 3 663 3022 205 31 51 chr5 10234488 10235228 -142302031 + ORR1A4-int LTR MaLR 5 729 -1234 3 663 810 202 30 184 chr5 10235085 10235389 -142301870 + MT2B LTR ERVL 6 262 -339 3 663 1374 200 3 9 chr5 10235276 10235604 -142301655 + ORR1A4-int LTR MaLR 718 1043 -920 3 663 549 168 9 0 chr5 10235606 10235719 -142301540 - L1_Mur2 LINE L1 -1659 4218 4105 3 663 37 23 0 0 chr5 10235747 10235791 -142301468 + AT_rich Low_complexity Low_complexity 1 44 0 3 663 3005 198 54 35 chr5 10237304 10238193 -142299066 - L1_Mur2 LINE L1 -1898 3979 3074 3 663 252 0 0 0 chr5 10238470 10238498 -142298761 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 663 501 124 0 0 chr5 10238498 10238595 -142298664 + (GA)n Simple_repeat Simple_repeat 1 97 0 3 663 3738 169 53 14 chr5 10239518 10240296 -142296963 + RMER17D2 LTR ERVK 2 809 0 3 663 289 279 100 8 chr5 10241069 10241199 -142296060 + B3 SINE B2 73 214 -2 3 663 214 320 78 0 chr5 10241607 10241710 -142295549 - B1F1 SINE Alu -21 128 18 3 663 228 320 0 0 chr5 10244517 10244595 -142292664 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 663 1327 218 26 9 chr5 10249117 10249459 -142287800 + ORR1A3-int LTR MaLR 718 1065 -898 3 663 810 202 286 72 chr5 10249460 10249863 -142287396 - L1_Mur2 LINE L1 -1694 4183 3695 3 663 186 43 0 0 chr5 10250250 10250273 -142286986 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 663 229 210 48 16 chr5 10250643 10250706 -142286553 - B1_Mur4 SINE Alu -22 128 64 3 663 180 259 71 36 chr5 10253245 10253329 -142283930 + MER5B DNA MER1_type 77 163 -15 3 663 210 358 12 0 chr5 10253362 10253443 -142283816 + MER5A DNA MER1_type 12 93 -96 3 663 192 184 0 0 chr5 10253509 10253558 -142283701 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 663 186 43 0 0 chr5 10253587 10253610 -142283649 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 3 663 983 176 37 5 chr5 10255675 10255863 -142281396 + RLTR19 LTR ERVK 2 195 -304 3 663 583 311 16 16 chr5 10256109 10256302 -142280957 - RLTR19A LTR ERVK -118 378 186 3 663 261 204 0 0 chr5 10256295 10256344 -142280915 + RLTR19 LTR ERVK 444 492 -7 3 663 525 145 25 235 chr5 10256638 10256800 -142280459 + RMER6B LTR ERVK 1 128 -333 3 663 3473 161 46 19 chr5 10256803 10257628 -142279631 - L1Md_F LINE L1 -5570 1046 208 3 663 1734 279 70 9 chr5 10257660 10258192 -142279067 + Lx7 LINE L1 6105 6668 -1028 3 663 968 199 109 17 chr5 10258192 10258422 -142278837 - ORR1C2 LTR MaLR 0 384 134 3 663 4412 182 21 31 chr5 10258422 10259333 -142277926 + Lx4A LINE L1 5959 6860 -198 3 663 28562 76 60 1 chr5 10259329 10265242 -142272017 - L1Md_F2 LINE L1 0 6582 316 3 663 642 198 203 0 chr5 10265237 10265424 -142271835 + Lx4A LINE L1 6833 7057 -1 3 663 866 178 2 0 chr5 10265429 10265589 -142271670 - ORR1C2 LTR MaLR -235 149 1 3 663 1782 256 124 16 chr5 10265589 10266208 -142271051 + Lx7 LINE L1 6664 7349 -347 3 663 207 69 0 0 chr5 10266216 10266245 -142271014 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 663 507 229 87 15 chr5 10266324 10266519 -142270740 + Lx7 LINE L1 7469 7677 -19 3 663 3427 73 4 0 chr5 10266575 10267042 -142270217 + L1_Mus1 LINE L1 5631 6099 -468 3 663 1040 110 7 0 chr5 10267042 10267196 -142270063 + L1_Mus1 LINE L1 6413 6567 0 3 663 2197 260 63 11 chr5 10267208 10267731 -142269528 - Lx6 LINE L1 -18 7442 6885 3 663 585 0 0 0 chr5 10267731 10267796 -142269463 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 663 351 0 0 0 chr5 10267796 10267834 -142269425 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 663 2197 260 63 11 chr5 10267834 10267927 -142269332 - Lx6 LINE L1 -576 6884 6794 3 663 3749 238 33 4 chr5 10267926 10269292 -142267967 + Lx6 LINE L1 5333 6750 -710 3 663 232 48 0 45 chr5 10269292 10269336 -142267923 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 3 663 566 177 8 0 chr5 10269366 10269496 -142267763 - L1_Mur3 LINE L1 -538 5342 5212 3 663 753 166 11 109 chr5 10269556 10269739 -142267520 + ORR1C1 LTR MaLR 1 165 -213 3 663 235 154 0 0 chr5 10269745 10269784 -142267475 + ORR1C1 LTR MaLR 338 376 -2 3 663 1651 210 8 0 chr5 10269786 10270157 -142267102 - L1_Mur3 LINE L1 -696 5184 4811 3 663 225 0 0 0 chr5 10270271 10270296 -142266963 + (TCTA)n Simple_repeat Simple_repeat 3 27 0 3 663 597 309 120 9 chr5 10270452 10270668 -142266591 + B4A SINE B4 5 244 -48 3 663 234 0 0 0 chr5 10270683 10270709 -142266550 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 663 679 242 160 0 chr5 10271175 10271369 -142265890 + URR1A DNA MER1_type 2 226 0 3 663 225 0 0 0 chr5 10271452 10271477 -142265782 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 663 192 214 0 0 chr5 10271692 10271748 -142265511 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 663 471 314 45 115 chr5 10271748 10272061 -142265198 - B4 SINE B4 0 292 2 3 663 30 59 0 0 chr5 10273432 10273483 -142263776 + AT_rich Low_complexity Low_complexity 1 51 0 3 663 680 23 12 0 chr5 10274085 10274171 -142263088 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 3 663 3310 192 72 23 chr5 10274214 10274953 -142262306 + Lx4B LINE L1 6284 7058 0 3 663 727 305 103 27 chr5 10274977 10275267 -142261992 - Lx6 LINE L1 -566 6894 6525 3 663 2480 195 21 15 chr5 10275267 10275792 -142261467 - RLTR11A LTR ERVK 0 528 1 3 663 727 280 39 27 chr5 10275792 10275990 -142261269 - Lx6 LINE L1 -618 6842 6635 3 663 1339 198 138 59 chr5 10276062 10276410 -142260849 - ORR1B1 LTR MaLR -8 359 3 3 663 1779 253 26 17 chr5 10276413 10277065 -142260194 - Lx6 LINE L1 -1507 5953 5284 3 663 6961 70 6 3 chr5 10277060 10277968 -142259291 - L1Md_F2 LINE L1 -2 6580 5671 3 663 7766 232 26 35 chr5 10277976 10278980 -142258279 - Lx6 LINE L1 -593 5287 4287 3 663 342 0 0 0 chr5 10278980 10279018 -142258241 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 3 663 7766 232 26 35 chr5 10279018 10279954 -142257305 - Lx6 LINE L1 -1594 4286 3373 3 663 2996 144 30 34 chr5 10279954 10280491 -142256768 - Lx LINE L1 0 6654 6120 3 663 7766 232 26 35 chr5 10280491 10280769 -142256490 - Lx6 LINE L1 -2508 3372 3091 3 663 4257 211 44 12 chr5 10280756 10281014 -142256245 - Lx6 LINE L1 -3533 2344 2065 3 663 264 59 0 0 chr5 10281014 10281048 -142256211 + (TGG)n Simple_repeat Simple_repeat 2 35 0 3 663 4257 225 50 34 chr5 10281048 10282294 -142254965 - Lx6 LINE L1 -3813 2064 813 3 663 603 40 0 0 chr5 10282656 10282730 -142254529 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 663 2235 152 19 60 chr5 10282923 10283343 -142253916 - RLTR9D LTR ERVK 0 403 1 3 663 7222 140 32 7 chr5 10284157 10285354 -142251905 + Lx2A1 LINE L1 5763 6989 -19 3 663 201 269 0 0 chr5 10285777 10285855 -142251404 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 663 379 222 111 42 chr5 10285984 10286200 -142251059 - Lx9 LINE L1 -2 7642 7412 3 663 1755 209 85 29 chr5 10286395 10286808 -142250451 + L1_Mur2 LINE L1 641 1076 -6010 3 663 6628 149 35 10 chr5 10286793 10287536 -142249723 + L1_Mur2 LINE L1 1308 2048 -3829 3 663 234 91 0 0 chr5 10287536 10287569 -142249690 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 663 501 17 0 0 chr5 10287572 10287630 -142249629 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 663 315 0 0 0 chr5 10287630 10287664 -142249595 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 663 6628 149 35 10 chr5 10287664 10288145 -142249114 + L1_Mur2 LINE L1 2049 2563 -3314 3 663 3738 214 81 26 chr5 10288151 10289238 -142248021 + RMER12 LTR ERVK 1 1195 -127 3 663 2556 137 142 11 chr5 10289289 10289812 -142247447 + L1_Mur2 LINE L1 2563 3153 -2724 3 663 27896 31 0 0 chr5 10289804 10293148 -142244111 + L1Md_T LINE L1 2243 5586 -297 3 663 8879 8 1 0 chr5 10293148 10294142 -142243117 + L1Md_T LINE L1 5587 6581 -1 3 663 5510 155 68 15 chr5 10294142 10295260 -142241999 + L1_Mur2 LINE L1 3056 4232 -1645 3 663 446 271 51 56 chr5 10295391 10295597 -142241662 - RMER12 LTR ERVK -189 1383 1022 3 663 1348 291 47 82 chr5 10295705 10296565 -142240694 - RMER12 LTR ERVK -1035 813 1 3 663 8644 175 54 12 chr5 10296565 10299413 -142237846 + Lx4B LINE L1 4224 7054 -4 3 663 258 81 0 0 chr5 10299420 10299457 -142237802 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 3 663 855 312 70 49 chr5 10302163 10302533 -142234726 + MTEa LTR MaLR 1 378 -1 3 663 414 292 63 71 chr5 10302631 10303083 -142234176 + L1MA6 LINE L1 4889 5327 -819 3 663 261 0 0 0 chr5 10303095 10303124 -142234135 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 663 468 0 0 0 chr5 10303124 10303175 -142234084 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 663 767 288 104 62 chr5 10303182 10304031 -142233228 + L1MA6 LINE L1 5379 6262 -38 3 663 591 244 58 96 chr5 10304061 10304406 -142232853 - Lx9 LINE L1 0 7644 7313 3 663 895 278 63 0 chr5 10304456 10304740 -142232519 + Lx9 LINE L1 7230 7531 -113 3 663 360 0 0 0 chr5 10304859 10304899 -142232360 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 663 2904 85 10 15 chr5 10305759 10306166 -142231093 + MTB_Mm LTR MaLR 1 405 -2 3 663 31 44 0 0 chr5 10308716 10308761 -142228498 + AT_rich Low_complexity Low_complexity 1 45 0 3 663 21 36 0 0 chr5 10308823 10308851 -142228408 + AT_rich Low_complexity Low_complexity 1 28 0 3 663 231 271 43 0 chr5 10308914 10308984 -142228275 + L1M1 LINE L1 5815 5887 -413 3 663 249 98 0 0 chr5 10309248 10309289 -142227970 + (T)n Simple_repeat Simple_repeat 1 41 0 3 663 1532 132 45 4 chr5 10309429 10309673 -142227586 - Lx LINE L1 -9 6972 6719 3 663 6810 106 31 15 chr5 10309690 10310932 -142226327 - Lx LINE L1 0 6654 5394 3 663 401 204 0 11 chr5 10311149 10311238 -142226021 + RMER1C Other Other 998 1085 -257 3 663 688 272 57 62 chr5 10311248 10311695 -142225564 + RMER2 LTR ERV1 5 549 -18 3 663 625 302 34 30 chr5 10311700 10311966 -142225293 + RMER1C Other Other 1075 1341 -1 3 663 408 314 14 14 chr5 10312277 10312419 -142224840 - MER54A LTR ERVL -757 144 3 3 663 467 321 39 42 chr5 10312447 10312779 -142224480 + L1MC3 LINE L1 3822 4152 -1994 3 663 340 364 35 14 chr5 10312889 10313031 -142224228 - RSINE1 SINE B4 -18 147 3 3 663 616 300 109 34 chr5 10313573 10314042 -142223217 + L1MC3 LINE L1 5628 6131 -1654 3 663 504 0 0 0 chr5 10314251 10314307 -142222952 + (TTTTA)n Simple_repeat Simple_repeat 4 59 0 3 663 754 100 99 7 chr5 10314307 10314448 -142222811 - Lx2 LINE L1 -9 6988 6835 3 663 2117 64 25 7 chr5 10314468 10314750 -142222509 + L1Md_F2 LINE L1 6279 6565 -17 3 663 206 245 0 0 chr5 10314757 10314810 -142222449 + A-rich Low_complexity Low_complexity 1 53 0 4 663 21 57 0 0 chr5 10315023 10315058 -142222201 + AT_rich Low_complexity Low_complexity 1 35 0 4 663 279 0 0 0 chr5 10315735 10315766 -142221493 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 663 1720 194 45 48 chr5 10315999 10316377 -142220882 + ORR1C1 LTR MaLR 1 377 -1 4 663 191 339 8 85 chr5 10316663 10316792 -142220467 - L3 LINE CR1 -1103 3386 3268 4 663 401 0 20 0 chr5 10317658 10317707 -142219552 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 663 875 346 67 38 chr5 10318026 10318605 -142218654 - Lx9 LINE L1 -195 7449 6854 4 663 492 62 0 0 chr5 10318620 10318684 -142218575 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 663 2446 256 48 22 chr5 10318757 10319493 -142217766 + Lx7 LINE L1 6613 7313 -383 4 663 189 0 0 0 chr5 10319495 10319516 -142217743 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4 663 381 291 62 16 chr5 10319690 10319941 -142217318 - L1MA6 LINE L1 -315 5985 5713 4 663 3696 256 58 58 chr5 10320587 10322477 -142214782 - Lx5 LINE L1 0 7050 5172 4 663 1958 189 160 19 chr5 10322477 10322537 -142214722 - RLTR11A LTR ERVK 0 528 469 4 663 186 43 0 0 chr5 10322537 10322560 -142214699 + (CA)n Simple_repeat Simple_repeat 1 23 0 4 663 1958 189 160 19 chr5 10322560 10322962 -142214297 - RLTR11A LTR ERVK -60 468 2 4 663 3212 214 48 23 chr5 10322962 10323069 -142214190 - Lx5 LINE L1 -709 5171 5065 4 663 3822 151 117 28 chr5 10323066 10323859 -142213400 + L1_Mur1 LINE L1 4304 5167 -719 4 663 244 192 39 0 chr5 10324553 10324605 -142212654 + (CATA)n Simple_repeat Simple_repeat 2 55 0 4 663 21 0 0 0 chr5 10324936 10324957 -142212302 + AT_rich Low_complexity Low_complexity 1 21 0 4 663 6540 135 25 17 chr5 10324978 10326159 -142211100 - Lx LINE L1 -7 6647 5458 4 663 2238 133 34 28 chr5 10326533 10326890 -142210369 + RLTR13D5 LTR ERVK 5 363 -660 4 663 2274 155 33 5 chr5 10326881 10327270 -142209989 + RLTR13D5 LTR ERVK 622 1021 -2 4 663 774 293 20 2 chr5 10327455 10327649 -142209610 + B3 SINE B2 1 198 0 4 663 27 87 0 0 chr5 10327722 10327791 -142209468 + AT_rich Low_complexity Low_complexity 1 69 0 4 663 219 130 0 42 chr5 10328807 10328855 -142208404 + T-rich Low_complexity Low_complexity 3 48 0 4 663 189 0 0 0 chr5 10328977 10328998 -142208261 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 4 663 324 349 0 58 chr5 10329085 10329222 -142208037 - Lx6 LINE L1 -74 7386 7258 4 663 194 0 39 0 chr5 10329677 10329703 -142207556 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 663 1802 222 12 32 chr5 10330075 10330480 -142206779 - L1_Mur1 LINE L1 -6540 442 46 4 663 46 62 0 0 chr5 10331581 10331662 -142205597 + AT_rich Low_complexity Low_complexity 1 81 0 4 663 4237 21 0 0 chr5 10331669 10332151 -142205108 - LTRIS_Mm LTR ERV1 0 482 1 4 663 240 111 0 0 chr5 10332154 10332190 -142205069 + (T)n Simple_repeat Simple_repeat 1 36 0 4 663 384 79 6 0 chr5 10332190 10332259 -142205000 - B1_Mur3 SINE Alu 0 149 79 4 663 264 326 80 15 chr5 10332687 10332886 -142204373 + L1MC LINE L1 5178 5389 -757 4 663 1284 268 61 0 chr5 10333318 10333647 -142203612 + Lx6 LINE L1 7101 7449 -11 4 663 385 200 0 0 chr5 10334310 10334380 -142202879 - L1_Mur3 LINE L1 -4041 1839 1770 4 663 310 256 22 11 chr5 10334399 10334490 -142202769 + Lx6 LINE L1 7139 7230 -230 4 663 300 234 83 113 chr5 10334495 10334611 -142202648 + RLTR20A2 LTR ERVK 452 566 -12 4 663 3501 206 84 57 chr5 10335503 10337673 -142199586 + MYSERV16_I-int LTR ERVK 1 2841 -1 4 663 526 187 70 75 chr5 10337673 10337854 -142199405 + RLTR20D LTR ERVK 1 203 -331 4 663 1192 272 94 52 chr5 10338282 10338783 -142198476 + RLTR20D LTR ERVK 47 568 0 4 663 232 161 35 18 chr5 10338792 10338849 -142198410 + Lx6 LINE L1 7238 7295 -165 4 663 654 13 0 0 chr5 10338858 10338933 -142198326 + (TATTG)n Simple_repeat Simple_repeat 3 77 0 4 663 307 106 30 0 chr5 10338933 10338999 -142198260 + (TTATG)n Simple_repeat Simple_repeat 4 71 0 4 663 327 229 36 0 chr5 10339538 10339621 -142197638 + MT2A LTR ERVL 2 87 -446 4 663 465 144 0 0 chr5 10339622 10339712 -142197547 + (T)n Simple_repeat Simple_repeat 1 90 0 4 663 892 141 0 0 chr5 10339719 10339854 -142197405 - B1_Mus1 SINE Alu -6 142 8 4 663 22 0 0 0 chr5 10339856 10339878 -142197381 + AT_rich Low_complexity Low_complexity 1 22 0 4 663 479 17 17 0 chr5 10339969 10340029 -142197230 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 4 663 180 0 0 0 chr5 10340050 10340070 -142197189 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 4 663 625 286 90 11 chr5 10340086 10340365 -142196894 - Lx7 LINE L1 -273 7423 7123 4 663 1237 285 87 36 chr5 10340447 10340862 -142196397 - Lx7 LINE L1 -836 6860 6425 4 663 693 286 75 42 chr5 10340899 10341257 -142196002 + MT2A LTR ERVL 164 533 0 4 663 381 293 17 65 chr5 10341615 10341845 -142195414 + L1M5 LINE L1 5333 5551 -628 4 663 1928 168 11 3 chr5 10342008 10342373 -142194886 - L1_Mur2 LINE L1 -401 5476 5109 4 663 331 356 0 9 chr5 10342373 10342478 -142194781 + B4A SINE B4 154 257 -35 4 663 1294 46 0 0 chr5 10342770 10342923 -142194336 - L1Md_F2 LINE L1 -320 6262 6110 4 663 316 111 11 90 chr5 10342923 10343012 -142194247 + L1Md_A LINE L1 6500 6581 -1 4 663 24 67 0 0 chr5 10344458 10344503 -142192756 + AT_rich Low_complexity Low_complexity 1 45 0 4 663 207 181 36 80 chr5 10345372 10345510 -142191749 + (TTATA)n Simple_repeat Simple_repeat 4 135 0 4 663 28 61 0 0 chr5 10345901 10345950 -142191309 + AT_rich Low_complexity Low_complexity 1 49 0 4 663 696 211 89 0 chr5 10346276 10346489 -142190770 - Lx9 LINE L1 -8 7636 7405 4 663 686 163 229 6 chr5 10346505 10346684 -142190575 - URR1B DNA MER1_type 0 225 7 4 663 31 68 0 0 chr5 10347144 10347203 -142190056 + AT_rich Low_complexity Low_complexity 1 59 0 4 663 315 0 0 0 chr5 10347267 10347302 -142189957 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 4 663 581 325 24 33 chr5 10347302 10347515 -142189744 - Lx5 LINE L1 -20 7030 6820 4 663 762 204 10 35 chr5 10348180 10348378 -142188881 + B2_Mm2 SINE B2 1 193 -2 4 663 23 0 0 0 chr5 10348459 10348482 -142188777 + AT_rich Low_complexity Low_complexity 1 23 0 4 663 588 297 36 5 chr5 10348491 10348687 -142188572 + B3 SINE B2 1 202 -14 4 663 1125 83 0 0 chr5 10351492 10351636 -142185623 + B1_Mus2 SINE Alu 2 145 -2 4 663 297 0 0 0 chr5 10351636 10351669 -142185590 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4 663 33 25 0 0 chr5 10351813 10351853 -142185406 + AT_rich Low_complexity Low_complexity 1 40 0 4 663 27 81 0 0 chr5 10351880 10351942 -142185317 + AT_rich Low_complexity Low_complexity 1 62 0 4 663 568 293 34 86 chr5 10352243 10352354 -142184905 - B3A SINE B2 0 198 92 4 663 2966 110 13 9 chr5 10352354 10352366 -142184893 - Lx3_Mus LINE L1 0 7009 6998 4 663 180 0 0 0 chr5 10352366 10352386 -142184873 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 4 663 2966 110 13 9 chr5 10352386 10352824 -142184435 - Lx3_Mus LINE L1 -12 6997 6557 4 663 568 293 34 86 chr5 10352824 10352895 -142184364 - B3A SINE B2 -107 91 25 4 663 1051 248 181 77 chr5 10352895 10353376 -142183883 + MT2A LTR ERVL 3 533 0 4 663 568 293 34 86 chr5 10353376 10353401 -142183858 - B3A SINE B2 -174 24 1 4 663 186 43 0 0 chr5 10353982 10354005 -142183254 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 82 1431 305 88 35 chr5 10354011 10354804 -142182455 + Lx9 LINE L1 6341 7175 -469 4 664 247 176 139 56 chr5 10354835 10354943 -142182316 + Lx8 LINE L1 7352 7468 -5 4 664 2597 41 28 0 chr5 10355092 10355410 -142181849 - IAPLTR2b LTR ERVK 0 327 1 4 664 6792 39 4 12 chr5 10355410 10356246 -142181013 - IAPEz-int LTR ERVK 0 6481 5653 4 664 2618 76 0 3 chr5 10356241 10356584 -142180675 - IAPEz-int LTR ERVK -4781 1700 1359 4 664 992 106 0 53 chr5 10356584 10356746 -142180513 - IAPEz-int LTR ERVK -5819 662 510 4 664 3654 37 9 2 chr5 10356746 10357179 -142180080 - RLTR10C LTR ERVK 0 436 1 4 664 44014 22 0 10 chr5 10357179 10362262 -142174997 - MMERVK10C-int LTR ERVK 0 7581 2552 4 664 369 111 0 0 chr5 10362268 10362331 -142174928 - MMERVK10C-int LTR ERVK -5634 1947 1885 4 664 339 138 17 0 chr5 10362338 10362396 -142174863 - MMERVK10C-int LTR ERVK -5627 1779 1721 4 664 323 250 104 22 chr5 10362396 10362531 -142174728 - MMERVK10C-int LTR ERVK -5469 668 523 4 664 795 159 279 29 chr5 10362525 10362765 -142174494 - MMERVK10C-int LTR ERVK -4795 611 312 4 664 778 191 10 42 chr5 10362857 10363148 -142174111 - MMERVK10C-int LTR ERVK -6629 952 729 4 664 2677 67 0 3 chr5 10363146 10363490 -142173769 - MMERVK10C-int LTR ERVK -7238 343 1 4 664 3628 44 5 2 chr5 10363490 10363925 -142173334 - RLTR10C LTR ERVK 0 436 1 4 664 2734 72 0 0 chr5 10363925 10364273 -142172986 - IAPEz-int LTR ERVK -5966 515 168 4 664 252 244 0 0 chr5 10364273 10364318 -142172941 - RLTR27 LTR ERVK -34 275 231 4 664 910 97 103 0 chr5 10364325 10364480 -142172779 - IAPEz-int LTR ERVK -6285 196 26 4 664 2593 41 28 0 chr5 10364486 10364804 -142172455 - IAPLTR2b LTR ERVK 0 327 1 4 664 377 169 22 33 chr5 10366267 10366359 -142170900 - Lx9 LINE L1 -165 7479 7389 4 664 15217 63 7 1 chr5 10366550 10369182 -142168077 - L1Md_F2 LINE L1 0 6582 3931 4 664 1519 45 0 25 chr5 10369612 10369815 -142167444 + L1Md_F3 LINE L1 6373 6570 -14 4 664 438 260 15 8 chr5 10369980 10370112 -142167147 + L1_Mus1 LINE L1 677 809 -5807 4 664 2150 185 9 9 chr5 10370114 10370544 -142166715 + L1_Mus1 LINE L1 725 1154 -5462 4 664 323 185 0 0 chr5 10370546 10370600 -142166659 + IAPEY3_LTR LTR ERVK 186 239 -93 4 664 2422 112 23 3 chr5 10370607 10370957 -142166302 - IAPEY2_LTR LTR ERVK 0 357 1 4 664 8313 118 13 1 chr5 10370958 10372292 -142164967 + L1_Mus1 LINE L1 1309 2658 -3225 4 664 8677 96 8 1 chr5 10372290 10374229 -142163030 + L1_Mus1 LINE L1 4612 6564 -3 4 664 22 35 0 0 chr5 10374229 10374258 -142163001 + AT_rich Low_complexity Low_complexity 1 29 0 4 664 18516 128 32 54 chr5 10374524 10374558 -142162701 + Lx3A LINE L1 1220 1253 -4633 4 664 1075 65 7 7 chr5 10374558 10374712 -142162547 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 4 664 18516 128 32 54 chr5 10374712 10377025 -142160234 + Lx3A LINE L1 1254 3477 -2409 4 664 198 0 0 0 chr5 10377025 10377047 -142160212 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 4 664 18516 128 32 54 chr5 10377047 10378221 -142159038 + Lx3A LINE L1 3478 4664 -1222 4 664 305 62 0 20 chr5 10378227 10378276 -142158983 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 4 664 5831 114 25 28 chr5 10378290 10379772 -142157487 - L1_Mus4 LINE L1 -1 6637 5267 4 664 4356 166 17 0 chr5 10379769 10380529 -142156730 + L1_Mus4 LINE L1 4483 5255 -628 4 664 7466 125 82 26 chr5 10380515 10382248 -142155011 + Lx3A LINE L1 4636 6513 -468 4 664 543 16 0 0 chr5 10382248 10382312 -142154947 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 4 664 511 73 0 0 chr5 10382312 10382380 -142154879 - B1_Mus2 SINE Alu -9 138 71 4 664 5610 143 39 72 chr5 10382380 10382842 -142154417 + Lx3A LINE L1 6514 6979 -2 4 664 706 257 21 10 chr5 10382859 10383052 -142154207 - B3 SINE B2 -19 197 3 4 664 1129 309 27 34 chr5 10383202 10383647 -142153612 + Lx6 LINE L1 6991 7432 -28 4 664 262 138 35 0 chr5 10383650 10383708 -142153551 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 4 664 337 336 199 14 chr5 10384080 10384367 -142152892 - MER34A1 LTR ERV1 -99 488 149 4 664 789 248 116 19 chr5 10384455 10385011 -142152248 + L1M2 LINE L1 4821 5446 -845 4 664 222 91 0 0 chr5 10385079 10385112 -142152147 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 4 664 285 333 126 15 chr5 10385179 10385450 -142151809 + L1M2 LINE L1 5528 5828 -463 4 664 1031 110 14 0 chr5 10385451 10385597 -142151662 + B1_Mus1 SINE Alu 1 148 0 4 664 802 171 11 0 chr5 10385597 10385773 -142151486 + GA-rich Low_complexity Low_complexity 1 178 0 4 664 262 250 42 0 chr5 10385968 10386064 -142151195 + L1MB8 LINE L1 6067 6166 -12 5 664 189 0 0 0 chr5 10386067 10386088 -142151171 + (T)n Simple_repeat Simple_repeat 1 21 0 5 664 22 0 0 0 chr5 10386160 10386182 -142151077 + AT_rich Low_complexity Low_complexity 1 22 0 5 664 353 75 0 19 chr5 10386260 10386314 -142150945 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 664 228 67 0 0 chr5 10386912 10386942 -142150317 + (CATG)n Simple_repeat Simple_repeat 2 31 0 5 664 228 332 50 39 chr5 10386965 10387116 -142150143 - B1_Mus2 SINE Alu 0 149 1 5 664 240 214 0 18 chr5 10388264 10388338 -142148921 + L1_Rod LINE L1 4658 4739 -1138 5 664 500 45 15 0 chr5 10388649 10388716 -142148543 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 664 228 161 0 0 chr5 10388716 10388778 -142148481 + (CAAG)n Simple_repeat Simple_repeat 1 62 0 5 664 755 102 17 0 chr5 10388778 10388896 -142148363 + (GGAA)n Simple_repeat Simple_repeat 2 121 0 5 664 435 316 15 118 chr5 10389110 10389372 -142147887 + Tigger7 DNA MER2_type 90 324 -2167 5 664 743 310 81 21 chr5 10390202 10390818 -142146441 - L1MA5A LINE L1 -409 5888 5229 5 664 337 215 0 0 chr5 10391197 10391276 -142145983 + Lx9 LINE L1 7559 7637 -7 5 664 298 318 81 56 chr5 10391581 10391741 -142145518 + L1M5 LINE L1 5551 5714 -450 5 664 26 0 0 0 chr5 10392172 10392198 -142145061 + AT_rich Low_complexity Low_complexity 1 26 0 5 664 624 48 0 0 chr5 10392338 10392422 -142144837 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 664 2484 214 52 35 chr5 10392542 10393137 -142144122 - RMER1C Other Other -11 1331 727 5 664 23 54 0 0 chr5 10394069 10394106 -142143153 + AT_rich Low_complexity Low_complexity 1 37 0 5 664 809 262 55 187 chr5 10394357 10394940 -142142319 - RLTR18B LTR ERVK -4 508 3 5 664 24 0 0 0 chr5 10395168 10395192 -142142067 + AT_rich Low_complexity Low_complexity 1 24 0 5 664 5108 39 5 2 chr5 10397159 10397781 -142139478 - L1Md_F3 LINE L1 -3 6581 5958 5 664 8716 49 0 2 chr5 10397781 10398941 -142138318 + L1Md_F3 LINE L1 4787 5944 -640 5 664 926 277 154 17 chr5 10399430 10399457 -142137802 - MTC LTR MaLR -14 407 383 5 664 3137 48 8 5 chr5 10399457 10399852 -142137407 - MTA_Mm LTR MaLR 0 396 1 5 664 926 277 154 17 chr5 10399852 10400180 -142137079 - MTC LTR MaLR -39 382 3 5 664 7705 63 1 5 chr5 10400458 10401440 -142135819 - L1Md_F2 LINE L1 -12 6570 5593 5 664 272 284 0 36 chr5 10401551 10401635 -142135624 - Lx5 LINE L1 -302 6748 6668 5 664 2175 228 95 16 chr5 10401606 10402564 -142134695 + Lx5 LINE L1 4877 5951 -1099 5 664 31 0 0 0 chr5 10403853 10403884 -142133375 + AT_rich Low_complexity Low_complexity 1 31 0 5 664 6156 168 51 9 chr5 10403884 10405053 -142132206 - Lx4A LINE L1 -7 7051 5834 5 664 260 304 137 0 chr5 10405729 10405831 -142131428 + Lx8 LINE L1 6503 6618 -855 5 664 865 298 197 7 chr5 10405923 10406227 -142131032 - ORR1D2 LTR MaLR 0 370 9 5 664 838 335 35 52 chr5 10406229 10406651 -142130608 + Lx8 LINE L1 6719 7133 -340 5 664 267 272 51 26 chr5 10406789 10406906 -142130353 + Lx8 LINE L1 7354 7473 0 5 664 1186 61 0 0 chr5 10406952 10407099 -142130160 + B1_Mus1 SINE Alu 2 148 0 5 664 2752 225 30 5 chr5 10408604 10409638 -142127621 - Lx5 LINE L1 -396 6601 5494 5 664 1684 231 44 30 chr5 10409636 10410069 -142127190 + Lx5 LINE L1 6612 7050 0 5 664 733 196 11 11 chr5 10410155 10410330 -142126929 + CT-rich Low_complexity Low_complexity 2 176 0 5 664 6480 115 34 4 chr5 10410369 10411361 -142125898 - Lx LINE L1 0 6654 5633 5 664 302 325 1 1 chr5 10411497 10411612 -142125647 - Lx8 LINE L1 -543 6930 6805 5 664 717 314 85 39 chr5 10411611 10412104 -142125155 + Lx8 LINE L1 6955 7470 -3 5 664 524 300 111 29 chr5 10412224 10412773 -142124486 + L1MC4a LINE L1 7211 7804 -78 5 664 22 0 0 0 chr5 10412824 10412846 -142124413 + AT_rich Low_complexity Low_complexity 1 22 0 5 664 37 23 0 0 chr5 10413344 10413388 -142123871 + AT_rich Low_complexity Low_complexity 1 44 0 5 664 1214 157 4 275 chr5 10414130 10414693 -142122566 - RMER17C LTR ERVK 0 410 1 5 664 207 0 0 0 chr5 10414802 10414825 -142122434 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 664 256 119 0 33 chr5 10415598 10415659 -142121600 + CT-rich Low_complexity Low_complexity 2 60 0 5 664 239 205 0 0 chr5 10416132 10416171 -142121088 - Lx9 LINE L1 -1752 5892 5854 5 664 240 220 34 0 chr5 10416173 10416232 -142121027 - L1M1 LINE L1 -451 5849 5789 5 664 516 220 37 90 chr5 10416384 10416629 -142120630 - Lx9 LINE L1 -5 7639 7408 5 664 354 98 0 0 chr5 10417038 10417089 -142120170 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 664 658 357 71 9 chr5 10417546 10417885 -142119374 + LTR68 LTR ERV1 71 430 -310 5 664 267 31 0 0 chr5 10418402 10418434 -142118825 + (TTG)n Simple_repeat Simple_repeat 1 32 0 5 664 184 59 59 0 chr5 10418467 10418501 -142118758 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 5 664 1622 223 142 35 chr5 10418658 10419229 -142118030 - RMER17C-int LTR ERVK 0 3238 2607 5 664 700 280 47 19 chr5 10419252 10419463 -142117796 + RLTR16 LTR ERVK 24 240 -265 5 664 769 239 54 56 chr5 10419814 10420089 -142117170 - RMER17C-int LTR ERVK -630 2608 2403 5 664 865 50 8 8 chr5 10420264 10420384 -142116875 + (TTTCC)n Simple_repeat Simple_repeat 5 124 0 5 664 576 42 0 0 chr5 10420410 10420481 -142116778 + (TTTC)n Simple_repeat Simple_repeat 3 73 0 5 664 2668 173 91 25 chr5 10420481 10421039 -142116220 - Lx LINE L1 -15 6639 6045 5 664 243 0 0 0 chr5 10422270 10422297 -142114962 + (A)n Simple_repeat Simple_repeat 1 27 0 5 664 564 15 0 0 chr5 10422773 10422838 -142114421 + (GA)n Simple_repeat Simple_repeat 1 65 0 5 664 186 362 105 23 chr5 10423635 10423676 -142113583 + L2 LINE L2 1855 1893 -1526 5 664 351 65 0 0 chr5 10423676 10423722 -142113537 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 664 186 362 105 23 chr5 10423722 10423946 -142113313 + L2 LINE L2 1894 2141 -1278 5 664 2223 243 27 4 chr5 10424034 10424514 -142112745 - Lx5 LINE L1 0 7050 6560 5 664 630 230 0 0 chr5 10425211 10425337 -142111922 - Lx5 LINE L1 -141 6909 6784 5 664 499 272 117 9 chr5 10425351 10425681 -142111578 + MTD LTR MaLR 13 407 -12 5 664 736 281 67 33 chr5 10425966 10426176 -142111083 + MER20 DNA MER1_type 2 218 -1 5 664 1345 302 94 59 chr5 10426425 10426528 -142110731 - Lx8 LINE L1 -16 7457 7345 5 664 466 83 36 0 chr5 10426528 10426612 -142110647 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 5 664 1345 302 94 59 chr5 10426612 10427275 -142109984 - Lx8 LINE L1 -129 7344 6665 5 664 373 291 157 34 chr5 10427279 10427514 -142109745 - Lx8 LINE L1 -1079 6394 6131 5 664 297 180 48 48 chr5 10427536 10427641 -142109618 - Lx9 LINE L1 -130 7514 7410 5 664 21 57 0 0 chr5 10428175 10428210 -142109049 + AT_rich Low_complexity Low_complexity 1 35 0 5 664 1712 277 149 31 chr5 10428505 10429094 -142108165 - Lx6 LINE L1 -26 7434 6776 5 664 418 250 136 12 chr5 10429398 10429560 -142107699 + Lx2 LINE L1 6814 6995 -2 5 664 1054 298 106 18 chr5 10430336 10430787 -142106472 - Lx8 LINE L1 -535 6938 6448 5 664 521 355 60 25 chr5 10430731 10431084 -142106175 + Lx8 LINE L1 6952 7316 -157 5 664 1069 233 183 3 chr5 10432800 10433161 -142104098 - Lx9 LINE L1 -234 7410 6985 5 664 5819 69 8 4 chr5 10433173 10433945 -142103314 - L1_Mus1 LINE L1 -2 6565 5791 5 664 2501 89 15 3 chr5 10433945 10434283 -142102976 + L1_Mus1 LINE L1 5456 5797 -86 5 664 494 247 173 12 chr5 10434275 10434443 -142102816 - Lx9 LINE L1 -648 6996 6802 5 664 456 229 167 0 chr5 10434447 10434639 -142102620 + Lx9 LINE L1 7411 7634 -10 5 664 264 242 172 21 chr5 10434718 10434811 -142102448 - B4A SINE B4 0 292 186 5 664 342 0 0 0 chr5 10435550 10435588 -142101671 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 664 23 0 0 0 chr5 10435926 10435949 -142101310 + AT_rich Low_complexity Low_complexity 1 23 0 5 664 1672 60 29 77 chr5 10436258 10436530 -142100729 - L1_Mus2 LINE L1 0 6566 6308 5 664 5986 102 24 12 chr5 10437091 10438375 -142098884 + L1VL2 LINE L1 153 1454 -2161 5 664 1740 75 0 20 chr5 10438375 10438620 -142098639 + L1_Mus1 LINE L1 6328 6567 0 5 664 180 0 0 0 chr5 10438622 10438642 -142098617 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 664 5313 96 42 8 chr5 10438642 10439005 -142098254 + L1VL2 LINE L1 1455 1826 -1789 5 664 291 270 0 0 chr5 10439149 10439223 -142098036 - PB1D10 SINE Alu -2 115 42 5 664 21 36 0 0 chr5 10440091 10440119 -142097140 + AT_rich Low_complexity Low_complexity 1 28 0 5 664 264 113 42 14 chr5 10440130 10440202 -142097057 + T-rich Low_complexity Low_complexity 5 78 0 5 664 1063 109 0 13 chr5 10440202 10440351 -142096908 - B1_Mus1 SINE Alu 0 148 2 5 664 23 54 0 0 chr5 10440351 10440388 -142096871 + AT_rich Low_complexity Low_complexity 1 37 0 5 664 233 219 78 0 chr5 10440491 10440555 -142096704 + L1M2 LINE L1 2745 2813 -3330 5 664 257 239 0 7 chr5 10440638 10440777 -142096482 + (TA)n Simple_repeat Simple_repeat 2 139 0 5 664 1790 319 59 54 chr5 10441138 10442172 -142095087 + Lx8 LINE L1 6433 7471 -2 5 664 894 319 132 51 chr5 10442560 10443623 -142093636 - L1M4 LINE L1 -1821 4325 3177 5 664 609 40 0 0 chr5 10443982 10444058 -142093201 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 664 540 56 0 0 chr5 10446540 10446612 -142090647 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 664 277 326 10 101 chr5 10446872 10447080 -142090179 - B3A SINE B2 -7 191 3 5 664 22 0 0 0 chr5 10447594 10447616 -142089643 + AT_rich Low_complexity Low_complexity 1 22 0 5 664 368 290 117 53 chr5 10448164 10448335 -142088924 - L1MB7 LINE L1 -68 6116 5935 5 664 302 307 108 18 chr5 10448430 10448596 -142088663 - L1MB7 LINE L1 -370 5808 5628 5 664 21 0 0 0 chr5 10449216 10449237 -142088022 + AT_rich Low_complexity Low_complexity 1 21 0 5 664 207 257 0 0 chr5 10449736 10449810 -142087449 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 664 27 49 0 0 chr5 10450996 10451037 -142086222 + AT_rich Low_complexity Low_complexity 1 41 0 5 664 34961 45 1 9 chr5 10452140 10457370 -142079889 + L1Md_T LINE L1 298 5589 -297 5 664 8482 31 0 0 chr5 10457370 10458366 -142078893 + L1Md_T LINE L1 5590 6585 0 5 664 1153 324 42 3 chr5 10458436 10458795 -142078464 + MTD LTR MaLR 33 405 -14 5 664 403 278 51 107 chr5 10459381 10459578 -142077681 + ORR1E LTR MaLR 6 191 -168 5 664 1882 336 104 52 chr5 10459827 10460899 -142076360 + MTE-int LTR MaLR 124 1251 -329 5 664 271 349 71 27 chr5 10460860 10460972 -142076287 - B4A SINE B4 -174 118 2 5 664 693 296 0 50 chr5 10461136 10461335 -142075924 - MTD LTR MaLR -11 408 220 6 664 3616 223 70 32 chr5 10461845 10462713 -142074546 + RMER13B LTR ERVK 8 908 0 6 664 2240 176 40 0 chr5 10464226 10464681 -142072578 + L1_Mur2 LINE L1 2729 3201 -2676 6 664 289 200 46 0 chr5 10464680 10464745 -142072514 + L1_Mur2 LINE L1 3610 3677 -2200 6 664 9431 196 42 34 chr5 10464922 10467504 -142069755 - Lx2B LINE L1 -9 6991 4428 6 664 1072 103 7 0 chr5 10467504 10467649 -142069610 - B1_Mus1 SINE Alu 0 148 3 6 664 9431 211 36 62 chr5 10467649 10468673 -142068586 - Lx2B LINE L1 -1453 4427 3406 6 664 2171 191 23 126 chr5 10468668 10469735 -142067524 - L1VL4 LINE L1 -4132 1754 802 6 664 39 60 0 0 chr5 10471248 10471315 -142065944 + AT_rich Low_complexity Low_complexity 1 67 0 6 664 607 342 69 17 chr5 10471512 10471744 -142065515 - MTEa LTR MaLR -135 244 1 6 664 23 0 0 0 chr5 10472535 10472558 -142064701 + AT_rich Low_complexity Low_complexity 1 23 0 6 664 1337 253 23 40 chr5 10473277 10473631 -142063628 - Lx6 LINE L1 -2 7458 7111 6 664 488 234 0 9 chr5 10473631 10473743 -142063516 + B1F2 SINE Alu 39 149 0 6 664 4733 168 2 19 chr5 10473750 10474132 -142063127 + Lx LINE L1 5066 5447 -436 6 664 4601 46 2 0 chr5 10474132 10474696 -142062563 + L1Md_F2 LINE L1 6017 6581 -1 6 664 6724 131 19 11 chr5 10474696 10475896 -142061363 + Lx LINE L1 5448 6647 -7 6 664 25 31 0 0 chr5 10475896 10475928 -142061331 + AT_rich Low_complexity Low_complexity 1 32 0 6 664 1288 240 172 3 chr5 10476068 10476428 -142060831 + MTC LTR MaLR 1 421 0 6 664 473 239 0 17 chr5 10477033 10477148 -142060111 + Lx6 LINE L1 7338 7450 -10 6 664 26 30 0 0 chr5 10479084 10479117 -142058142 + AT_rich Low_complexity Low_complexity 1 33 0 6 664 23 0 0 0 chr5 10479148 10479171 -142058088 + AT_rich Low_complexity Low_complexity 1 23 0 6 664 286 338 89 7 chr5 10479184 10479330 -142057929 - MLT1E LTR MaLR 0 653 496 6 664 239 327 75 0 chr5 10479697 10479804 -142057455 + Lx8 LINE L1 6890 7004 -469 6 664 287 158 50 50 chr5 10480043 10480103 -142057156 + RMER10B LTR ERVL 276 335 -63 6 664 486 0 0 0 chr5 10480108 10480162 -142057097 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 664 201 179 54 0 chr5 10480192 10480248 -142057011 + A-rich Low_complexity Low_complexity 4 62 0 6 664 225 0 0 0 chr5 10480937 10480962 -142056297 + (TA)n Simple_repeat Simple_repeat 2 26 0 6 664 2184 182 86 38 chr5 10480985 10481488 -142055771 + RLTR11A2 LTR ERVK 1 527 0 6 664 432 0 0 0 chr5 10481490 10481538 -142055721 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 664 753 41 0 0 chr5 10481538 10481634 -142055625 + (TG)n Simple_repeat Simple_repeat 2 98 0 6 664 27 29 0 0 chr5 10483416 10483450 -142053809 + AT_rich Low_complexity Low_complexity 1 34 0 6 10 19076 112 11 9 chr5 10483873 10486141 -142051118 + L1_Mus1 LINE L1 2962 5232 -651 6 665 8375 24 1 1 chr5 10486141 10487099 -142050160 + RLTR13A2 LTR ERVK 1 958 0 6 665 19076 82 7 3 chr5 10487099 10488544 -142048715 + L1_Mus1 LINE L1 5233 6567 0 6 665 1342 183 32 8 chr5 10488544 10488792 -142048467 + ORR1A4 LTR MaLR 17 270 -59 6 665 396 159 43 43 chr5 10488929 10488961 -142048298 + ORR1A4 LTR MaLR 238 273 -56 6 665 185 0 0 39 chr5 10488961 10488987 -142048272 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 6 665 396 159 43 43 chr5 10488987 10489046 -142048213 + ORR1A4 LTR MaLR 274 329 0 6 665 272 222 0 0 chr5 10489048 10489111 -142048148 + Lx6 LINE L1 7372 7434 -26 6 665 450 0 0 0 chr5 10489406 10489456 -142047803 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 6 665 325 333 0 0 chr5 10489467 10489557 -142047702 + B3 SINE B2 41 130 -86 6 665 299 340 11 0 chr5 10489888 10489982 -142047277 - LTR78 LTR ERV1 -114 1190 1096 6 665 311 271 113 18 chr5 10490623 10490788 -142046471 + Lx9 LINE L1 5706 5919 -1725 6 665 2353 314 78 23 chr5 10491104 10492058 -142045201 + Lx8 LINE L1 6211 7216 -257 6 665 405 164 0 0 chr5 10492374 10492447 -142044812 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 6 665 233 203 13 104 chr5 10492463 10492540 -142044719 + Lx9 LINE L1 6420 6489 -984 6 665 447 68 0 0 chr5 10492545 10492604 -142044655 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 665 619 81 0 0 chr5 10492845 10492932 -142044327 + BC1_Mm scRNA scRNA 1 87 -65 6 665 375 200 10 31 chr5 10492932 10492943 -142044316 + ID_B1 SINE B4 1 96 -128 6 665 23 33 0 0 chr5 10493023 10493053 -142044206 + AT_rich Low_complexity Low_complexity 1 30 0 6 665 267 315 92 8 chr5 10493319 10493450 -142043809 + L1MEd LINE L1 98 239 -5880 6 665 1087 102 0 0 chr5 10493775 10493922 -142043337 + B1_Mm SINE Alu 1 147 0 6 665 1331 66 49 6 chr5 10494303 10494486 -142042773 - B2_Mm2 SINE B2 -4 191 1 6 665 407 231 0 2 chr5 10494821 10494914 -142042345 - PB1D9 SINE Alu -49 98 10 6 665 240 296 11 100 chr5 10494845 10494935 -142042324 - MT2B LTR ERVL -368 233 152 6 665 282 152 136 25 chr5 10494936 10495017 -142042242 + B1_Mur4 SINE Alu 60 149 -1 6 665 663 162 17 17 chr5 10495053 10495172 -142042087 + PB1D9 SINE Alu 2 120 0 6 665 412 271 130 0 chr5 10495227 10495401 -142041858 + B3 SINE B2 6 210 -6 6 665 1522 179 208 79 chr5 10495503 10495581 -142041678 - RLTR16 LTR ERVK 0 505 415 6 665 477 34 0 0 chr5 10495581 10495640 -142041619 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 665 1522 179 208 79 chr5 10495640 10495930 -142041329 - RLTR16 LTR ERVK -91 414 50 6 665 1816 80 4 4 chr5 10495930 10496180 -142041079 + L1_Mus2 LINE L1 6311 6560 -6 6 665 369 76 15 29 chr5 10496180 10496248 -142041011 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 665 1522 179 208 79 chr5 10496248 10496320 -142040939 - RLTR16 LTR ERVK -456 49 9 6 665 2373 68 3 15 chr5 10496586 10496915 -142040344 + L1_Mus1 LINE L1 6242 6566 -1 6 665 27 0 0 0 chr5 10497251 10497278 -142039981 + AT_rich Low_complexity Low_complexity 1 27 0 6 665 309 68 0 0 chr5 10497417 10497461 -142039798 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 665 469 287 76 14 chr5 10497523 10497668 -142039591 + B4A SINE B4 107 260 -32 6 665 627 280 56 48 chr5 10498866 10499222 -142038037 + RLTR10D LTR ERVK 1 359 0 6 665 1708 235 63 0 chr5 10499269 10499682 -142037577 + IAP-d-int LTR ERVK 22 460 -6082 6 665 1355 227 3 0 chr5 10499702 10499993 -142037266 + IAP-d-int LTR ERVK 2499 2790 -3752 6 665 4504 291 25 24 chr5 10500000 10501784 -142035475 + IAP-d-int LTR ERVK 2798 4582 -1960 1 665 212 308 117 36 chr5 10501786 10501897 -142035362 + B4 SINE B4 5 124 -168 2 665 1313 283 42 27 chr5 10501897 10502376 -142034883 + IAP-d-int LTR ERVK 4696 5181 -1361 1 665 1621 81 5 0 chr5 10502481 10502690 -142034569 - MMERVK10C-int LTR ERVK -728 6952 6743 3 665 3277 92 18 2 chr5 10502680 10503127 -142034132 - MMERVK10C-int LTR ERVK -1367 6214 5761 3 665 3149 96 5 16 chr5 10503118 10503551 -142033708 - MMERVK10C-int LTR ERVK -1939 5642 5215 3 665 771 119 28 43 chr5 10503817 10503958 -142033301 - MMERVK10C-int LTR ERVK -2911 4670 4532 3 665 445 162 28 43 chr5 10503976 10504099 -142033160 - MMETn-int LTR ERVK -2380 2464 2357 4 665 1684 149 148 3 chr5 10504101 10504669 -142032590 - ETnERV2-int LTR ERVK -3135 4271 3567 5 665 643 202 0 0 chr5 10504695 10504814 -142032445 - ETnERV2-int LTR ERVK -4653 2753 2635 5 665 280 279 0 55 chr5 10504826 10504917 -142032342 - ETnERV2-int LTR ERVK -4867 2539 2454 5 665 446 169 93 0 chr5 10504928 10505046 -142032213 - ETnERV2-int LTR ERVK -5557 1849 1721 5 665 1508 193 103 72 chr5 10505046 10505527 -142031732 - ETnERV2-int LTR ERVK -4783 623 255 5 665 623 109 59 0 chr5 10505550 10505651 -142031608 - IAPLTR4_I LTR ERVK -1356 114 8 6 665 1504 163 94 0 chr5 10505653 10505941 -142031318 - IAPEY3_LTR LTR ERVK -17 315 1 7 665 1405 161 0 8 chr5 10505963 10506201 -142031058 + IAP-d-int LTR ERVK 6307 6542 0 1 665 795 284 50 45 chr5 10506201 10506558 -142030701 + RLTR10D LTR ERVK 1 359 0 1 665 1493 235 114 24 chr5 10507352 10507862 -142029397 - RLTR31_Mm LTR ERVK 0 561 6 8 665 2308 116 25 28 chr5 10508217 10508616 -142028643 - L1_Mus4 LINE L1 0 6636 6239 9 665 3652 84 0 0 chr5 10510674 10511161 -142026098 + L1_Mus2 LINE L1 6080 6566 0 1 665 1140 82 0 0 chr5 10511572 10511719 -142025540 + B1_Mus2 SINE Alu 1 147 0 1 665 207 88 0 0 chr5 10511722 10511756 -142025503 + (A)n Simple_repeat Simple_repeat 1 34 0 1 665 874 278 75 57 chr5 10512297 10512358 -142024901 - L1M2 LINE L1 -1096 5047 4974 1 665 378 0 0 0 chr5 10512358 10512400 -142024859 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 665 874 278 75 57 chr5 10512400 10512577 -142024682 - L1M2 LINE L1 -1170 4973 4798 1 665 227 31 31 0 chr5 10512577 10512609 -142024650 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 665 874 278 75 57 chr5 10512609 10513005 -142024254 - L1M2 LINE L1 -1346 4797 4401 1 665 633 231 93 12 chr5 10513028 10513338 -142023921 - RMER6D LTR ERVK -2 688 311 1 665 214 206 16 16 chr5 10513339 10513403 -142023856 + CT-rich Low_complexity Low_complexity 4 67 0 1 665 1652 197 68 22 chr5 10513405 10513847 -142023412 - RMER6C LTR ERVK -259 461 1 1 665 234 0 0 0 chr5 10514493 10514519 -142022740 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 665 24 32 0 0 chr5 10514599 10514630 -142022629 + AT_rich Low_complexity Low_complexity 1 31 0 2 665 21 36 0 0 chr5 10515427 10515455 -142021804 + AT_rich Low_complexity Low_complexity 1 28 0 2 665 180 0 0 0 chr5 10517266 10517286 -142019973 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2 665 369 0 0 0 chr5 10517346 10517387 -142019872 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 665 3080 133 0 0 chr5 10517391 10517848 -142019411 - Lx3C LINE L1 -231 6745 6289 2 665 4660 137 12 22 chr5 10517819 10518492 -142018767 - Lx3C LINE L1 -1010 5966 5308 2 665 7045 65 5 2 chr5 10518492 10519383 -142017876 + RLTR13B1 LTR ERVK 1 893 0 2 665 4660 143 14 40 chr5 10519383 10519630 -142017629 - Lx3C LINE L1 -579 5307 5070 2 665 211 143 24 0 chr5 10519973 10520015 -142017244 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 665 934 266 53 28 chr5 10520482 10520764 -142016495 + Lx6 LINE L1 7024 7312 -148 2 665 602 84 56 9 chr5 10520781 10520889 -142016370 - L1_Mus4 LINE L1 -1 6635 6523 2 665 222 37 0 0 chr5 10521015 10521042 -142016217 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 665 2163 73 32 6 chr5 10521482 10521925 -142015334 + RLTR1B LTR ERV1 1 495 -17 3 665 5547 92 18 15 chr5 10521999 10522815 -142014444 - L1_Mus4 LINE L1 -108 6528 5732 2 665 804 276 214 20 chr5 10522820 10523260 -142013999 - RMER2 LTR ERV1 -42 525 1 3 665 366 248 26 52 chr5 10523260 10523375 -142013884 + Lx6 LINE L1 7287 7398 -62 2 665 246 172 17 0 chr5 10523551 10523609 -142013650 + Lx6 LINE L1 7398 7456 -4 2 665 34 55 0 0 chr5 10523803 10523858 -142013401 + AT_rich Low_complexity Low_complexity 1 55 0 3 665 26 74 0 0 chr5 10524233 10524287 -142012972 + AT_rich Low_complexity Low_complexity 1 54 0 3 665 25498 91 6 1 chr5 10524460 10525945 -142011314 + L1_Mus1 LINE L1 2259 3754 -2129 3 665 2446 74 5 56 chr5 10525945 10526118 -142011141 + L1Md_F2 LINE L1 6227 6397 -185 3 665 2182 89 119 11 chr5 10526118 10526470 -142010789 - RLTR10 LTR ERVK 0 390 1 3 665 2446 74 5 56 chr5 10526470 10526670 -142010589 + L1Md_F2 LINE L1 6398 6581 -1 3 665 25498 89 6 1 chr5 10526670 10528980 -142008279 + L1_Mus1 LINE L1 3755 6072 -495 3 665 2779 204 19 84 chr5 10528994 10529899 -142007360 + L1_Mur2 LINE L1 3159 4004 -1873 3 665 287 173 27 0 chr5 10529903 10529978 -142007281 + L1_Mur2 LINE L1 4107 4183 -1694 3 665 1312 211 6 9 chr5 10529994 10530319 -142006940 - ORR1A4-int LTR MaLR -920 1043 720 3 665 701 188 18 201 chr5 10530214 10530487 -142006772 - MT2B LTR ERVL -344 257 35 3 665 2993 193 36 70 chr5 10530371 10531117 -142006142 - ORR1A4-int LTR MaLR -1234 729 9 3 665 821 234 191 68 chr5 10531122 10531415 -142005844 - ORR1A4 LTR MaLR 0 329 1 3 665 1715 168 3 7 chr5 10531420 10531725 -142005534 - ORR1A2 LTR MaLR 0 327 24 4 665 339 130 0 0 chr5 10531939 10531993 -142005266 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 665 471 351 54 5 chr5 10532116 10532302 -142004957 - Lx8 LINE L1 -166 7307 7113 4 665 456 19 0 0 chr5 10532308 10532361 -142004898 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 4 665 4782 170 11 84 chr5 10533452 10534934 -142002325 + L1VL4 LINE L1 575 1950 -1609 4 665 241 204 0 0 chr5 10535190 10535239 -142002020 - RLTR19 LTR ERVK -7 492 444 4 665 496 247 189 12 chr5 10535232 10535348 -142001911 + RLTR19A LTR ERVK 186 330 -166 4 665 183 42 0 0 chr5 10535348 10535372 -142001887 + (ATTTG)n Simple_repeat Simple_repeat 1 24 0 4 665 279 0 0 0 chr5 10535373 10535404 -142001855 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 665 496 247 189 12 chr5 10535404 10535449 -142001810 + RLTR19A LTR ERVK 331 375 -121 4 665 942 194 37 5 chr5 10535693 10535880 -142001379 - RLTR19 LTR ERVK -305 194 2 4 665 186 43 0 0 chr5 10537996 10538019 -141999240 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 4 665 201 74 0 0 chr5 10538044 10538071 -141999188 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 665 3935 7 0 0 chr5 10539536 10539976 -141997283 - L1Md_A LINE L1 0 6582 6143 5 665 292 229 104 0 chr5 10540483 10540579 -141996680 + B1_Mur4 SINE Alu 23 128 -22 5 665 183 146 0 0 chr5 10540950 10540991 -141996268 + (T)n Simple_repeat Simple_repeat 1 41 0 5 665 675 25 0 0 chr5 10541057 10541138 -141996121 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 665 286 285 42 99 chr5 10541683 10541853 -141995406 - L1_Mur2 LINE L1 -4008 1869 1700 5 665 695 263 88 0 chr5 10541853 10542047 -141995212 - B3 SINE B2 -5 211 1 5 665 286 285 42 99 chr5 10542047 10542160 -141995099 - L1_Mur2 LINE L1 -4178 1699 1602 5 665 26 0 0 0 chr5 10542294 10542320 -141994939 + AT_rich Low_complexity Low_complexity 1 26 0 5 665 5307 135 38 58 chr5 10542522 10543553 -141993706 - Lx2A LINE L1 0 7008 5999 5 665 1019 245 0 10 chr5 10543611 10543817 -141993442 + B3 SINE B2 3 206 -10 5 665 15417 174 42 11 chr5 10543818 10547031 -141990228 - L1_Mur1 LINE L1 -1296 4590 1280 6 665 4148 157 25 14 chr5 10547023 10547813 -141989446 - Lx2 LINE L1 -259 6738 5574 6 665 367 284 52 105 chr5 10547845 10548093 -141989166 + L1ME3A LINE L1 5714 5948 -225 6 665 297 0 0 0 chr5 10548234 10548267 -141988992 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 665 396 0 0 0 chr5 10548267 10548310 -141988949 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 665 816 194 80 99 chr5 10548349 10548561 -141988698 + ORR1C2 LTR MaLR 177 384 0 6 665 1838 196 60 18 chr5 10549079 10549479 -141987780 + MTC LTR MaLR 1 417 -4 6 665 21 0 0 0 chr5 10549502 10549523 -141987736 + AT_rich Low_complexity Low_complexity 1 21 0 6 665 1057 98 0 0 chr5 10549802 10549945 -141987314 + B1_Mus2 SINE Alu 3 145 -2 6 665 264 30 0 0 chr5 10549945 10549978 -141987281 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 665 31 0 0 0 chr5 10550074 10550105 -141987154 + AT_rich Low_complexity Low_complexity 1 31 0 7 665 522 0 0 0 chr5 10550987 10551045 -141986214 + (AATAG)n Simple_repeat Simple_repeat 2 59 0 7 665 1006 130 0 0 chr5 10551152 10551298 -141985961 + B1_Mus1 SINE Alu 3 148 0 7 665 8060 79 3 3 chr5 10551724 10553499 -141983760 - L1Md_F2 LINE L1 -1 6581 4808 7 665 3393 111 35 9 chr5 10553492 10554027 -141983232 + L1Md_F2 LINE L1 5038 5586 -297 7 665 7132 76 27 3 chr5 10554027 10554985 -141982274 + L1Md_F2 LINE L1 5587 6567 -15 7 665 260 291 0 34 chr5 10554994 10555083 -141982176 + (CATATA)n Simple_repeat Simple_repeat 4 89 0 7 665 1362 89 39 0 chr5 10555521 10555701 -141981558 - B2_Mm2 SINE B2 -8 187 1 7 665 775 218 36 21 chr5 10555869 10556061 -141981198 - RMER19C LTR ERVK -2 609 415 7 665 452 152 67 0 chr5 10556789 10556894 -141980365 - Lx9 LINE L1 -1 7643 7532 7 665 21 0 0 0 chr5 10556963 10556984 -141980275 + AT_rich Low_complexity Low_complexity 1 21 0 7 665 1496 212 57 55 chr5 10557896 10558335 -141978924 - RMER1C Other Other -25 1317 878 8 665 545 198 0 0 chr5 10559619 10559710 -141977549 - RMER1C Other Other -434 908 818 8 665 3124 62 20 2 chr5 10559848 10560317 -141976942 - L1_Mus1 LINE L1 0 6567 6149 8 665 426 53 0 0 chr5 10560464 10560521 -141976738 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 665 23 54 0 0 chr5 10561202 10561239 -141976020 + AT_rich Low_complexity Low_complexity 1 37 0 8 665 1033 96 0 27 chr5 10561255 10561438 -141975821 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 8 665 7238 48 5 0 chr5 10563516 10564407 -141972852 - L1Md_F2 LINE L1 -13 6569 5675 8 665 4471 140 6 23 chr5 10564404 10565564 -141971695 - L1Md_A LINE L1 -4291 1592 457 8 665 414 0 0 0 chr5 10565769 10565815 -141971444 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 665 41130 5 0 0 chr5 10566060 10572405 -141964854 - L1Md_A LINE L1 0 6582 237 8 665 822 232 43 14 chr5 10572430 10572640 -141964619 - B3 SINE B2 0 216 1 8 665 581 338 77 30 chr5 10572659 10572997 -141964262 + MER68 LTR ERVL 145 498 -65 9 665 616 161 74 37 chr5 10573013 10573174 -141964085 + MT2B LTR ERVL 1 191 -342 9 665 216 0 0 0 chr5 10573174 10573198 -141964061 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 665 540 201 171 82 chr5 10573198 10573278 -141963981 + MT2B LTR ERVL 192 224 -309 9 665 240 35 0 0 chr5 10573280 10573309 -141963950 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 665 198 128 0 0 chr5 10573309 10573348 -141963911 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 9 665 405 54 0 0 chr5 10573345 10573401 -141963858 + (GA)n Simple_repeat Simple_repeat 2 57 0 9 665 633 159 18 9 chr5 10573454 10573568 -141963691 + ORR1B2 LTR MaLR 253 367 0 9 665 7552 75 3 2 chr5 10574116 10575657 -141961602 - L1Md_F2 LINE L1 -10 6572 5033 9 665 6270 60 21 2 chr5 10575652 10576471 -141960788 + L1_Mm LINE L1 4043 4876 -1007 9 665 7902 56 13 2 chr5 10576473 10577798 -141959461 - L1Md_F2 LINE L1 0 6582 5244 9 665 1134 81 0 0 chr5 10577798 10577947 -141959312 + L1_Mm LINE L1 4868 5016 -867 9 665 246 291 62 18 chr5 10578067 10578179 -141959080 + RMER17A2 LTR ERVK 247 363 -543 1 665 246 32 0 0 chr5 10578179 10578210 -141959049 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 665 830 54 0 51 chr5 10578399 10578536 -141958723 + L1Md_F2 LINE L1 6440 6569 -13 1 665 25 90 0 0 chr5 10579431 10579498 -141957761 + AT_rich Low_complexity Low_complexity 1 67 0 1 665 2070 182 30 27 chr5 10579905 10580306 -141956953 + MTB_Mm LTR MaLR 6 407 0 1 665 272 91 23 0 chr5 10580509 10580553 -141956706 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 665 1562 319 73 27 chr5 10580618 10581437 -141955822 + Lx8 LINE L1 6617 7473 0 1 665 1105 84 0 0 chr5 10581683 10581826 -141955433 + B1_Mus2 SINE Alu 5 147 0 1 665 249 139 0 0 chr5 10581826 10581869 -141955390 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 1 665 31 0 0 0 chr5 10581911 10581942 -141955317 + AT_rich Low_complexity Low_complexity 1 31 0 1 665 180 97 0 0 chr5 10582812 10582843 -141954416 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 665 528 215 8 32 chr5 10584723 10584848 -141952411 - RLTR11A LTR ERVK -3 525 404 1 665 1932 205 52 77 chr5 10584846 10585368 -141951891 + RLTR11A LTR ERVK 20 528 0 1 665 256 292 22 11 chr5 10585496 10585593 -141951666 - MTE2b LTR MaLR -1 378 281 1 665 846 190 34 28 chr5 10585593 10585772 -141951487 - URR1A DNA MER1_type 0 226 47 1 665 224 120 0 20 chr5 10586123 10586174 -141951085 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 1 665 924 110 7 0 chr5 10586178 10586314 -141950945 - B1_Mus1 SINE Alu 0 148 12 1 665 473 275 20 26 chr5 10586314 10586331 -141950928 - ID_B1 SINE B4 -1 223 72 1 665 3080 67 2 7 chr5 10586480 10586887 -141950372 + L1_Mus1 LINE L1 6160 6564 -3 1 665 707 33 11 0 chr5 10587091 10587181 -141950078 + (TC)n Simple_repeat Simple_repeat 2 92 0 1 665 1855 209 139 52 chr5 10587225 10587860 -141949399 - RMER6C LTR ERVK 0 690 1 1 665 834 123 0 0 chr5 10587889 10588019 -141949240 + (TTCC)n Simple_repeat Simple_repeat 3 132 0 1 665 4499 101 3 11 chr5 10588023 10588677 -141948582 - L1_Mus4 LINE L1 0 6636 5988 1 665 21 0 0 0 chr5 10589021 10589042 -141948217 + AT_rich Low_complexity Low_complexity 1 21 0 1 665 318 292 70 122 chr5 10589529 10589743 -141947516 + B3 SINE B2 1 203 -13 1 665 228 122 0 0 chr5 10589769 10589810 -141947449 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 665 25 31 0 0 chr5 10589995 10590027 -141947232 + AT_rich Low_complexity Low_complexity 1 32 0 1 665 232 337 69 51 chr5 10590232 10590407 -141946852 - MER58A DNA MER1_type -15 209 32 1 665 288 278 0 0 chr5 10591380 10591452 -141945807 - Lx9 LINE L1 -271 7373 7302 1 665 516 231 10 0 chr5 10591459 10591563 -141945696 + Lx9 LINE L1 7191 7295 -349 1 665 234 274 193 0 chr5 10591965 10592100 -141945159 + Lx8 LINE L1 7311 7471 -2 1 665 1068 311 28 3 chr5 10593431 10593750 -141943509 - Lx9 LINE L1 -940 6704 6378 1 665 887 343 83 32 chr5 10594214 10594813 -141942446 + Lx9 LINE L1 6742 7371 -273 1 665 520 295 38 5 chr5 10594817 10595001 -141942258 - MTD LTR MaLR 0 419 230 1 665 1344 120 5 0 chr5 10595133 10595341 -141941918 - Lx2 LINE L1 -14 6983 6775 1 665 3992 124 37 22 chr5 10595341 10595646 -141941613 - Lx2 LINE L1 -354 6643 6343 1 665 2259 103 45 8 chr5 10595646 10595999 -141941260 + L1Md_F2 LINE L1 6205 6570 -12 1 665 3992 124 37 22 chr5 10595999 10596334 -141940925 - Lx2 LINE L1 -655 6342 5993 1 665 670 314 107 4 chr5 10596334 10596577 -141940682 - MTD LTR MaLR -151 268 1 1 665 297 0 0 0 chr5 10596653 10596686 -141940573 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 665 596 301 39 25 chr5 10596844 10597048 -141940211 + B3 SINE B2 3 209 -7 1 665 504 367 48 38 chr5 10597876 10598165 -141939094 - MLT1A0 LTR MaLR -10 355 64 1 665 307 311 116 28 chr5 10598777 10599068 -141938191 - MTC LTR MaLR -85 334 3 1 665 1275 96 0 0 chr5 10599216 10599529 -141937730 + (TTC)n Simple_repeat Simple_repeat 1 313 0 1 665 658 89 59 10 chr5 10601060 10601162 -141936097 - L1VL1 LINE L1 -6235 187 81 1 665 5979 51 1 4 chr5 10601162 10601908 -141935351 + L1Md_F2 LINE L1 5826 6569 -13 1 665 32 43 0 0 chr5 10602022 10602068 -141935191 + AT_rich Low_complexity Low_complexity 1 46 0 1 665 3147 48 5 8 chr5 10602391 10602788 -141934471 - MTA_Mm LTR MaLR 0 396 1 1 665 192 77 0 0 chr5 10603358 10603384 -141933875 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 665 471 261 100 44 chr5 10603541 10603701 -141933558 - B3A SINE B2 -16 182 14 1 665 3988 50 22 0 chr5 10603889 10604385 -141932874 + L1Md_F2 LINE L1 6076 6582 0 1 665 428 121 0 11 chr5 10604600 10604692 -141932567 + (GA)n Simple_repeat Simple_repeat 2 92 0 1 665 21 57 0 0 chr5 10604782 10604817 -141932442 + AT_rich Low_complexity Low_complexity 1 35 0 1 665 519 261 29 0 chr5 10604856 10604994 -141932265 + B1_Mus2 SINE Alu 2 143 -4 1 665 246 32 0 0 chr5 10604998 10605029 -141932230 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1 665 432 97 0 0 chr5 10605035 10605097 -141932162 + (GGA)n Simple_repeat Simple_repeat 2 63 0 1 665 1581 214 96 35 chr5 10605324 10605721 -141931538 + MTC LTR MaLR 1 421 0 1 665 307 264 47 0 chr5 10606448 10606577 -141930682 - L1MA8 LINE L1 0 6291 6157 1 665 331 245 72 114 chr5 10606790 10607177 -141930082 - L1MD LINE L1 -710 5649 5255 1 665 564 298 106 11 chr5 10607315 10607638 -141929621 + L1_Mur3 LINE L1 2517 2875 -2972 1 665 373 280 44 28 chr5 10607920 10608100 -141929159 - L1MA4 LINE L1 -401 5899 5717 1 665 21 57 0 0 chr5 10608399 10608434 -141928825 + AT_rich Low_complexity Low_complexity 1 35 0 1 665 21 36 0 0 chr5 10609591 10609619 -141927640 + AT_rich Low_complexity Low_complexity 1 28 0 1 665 231 204 0 0 chr5 10610719 10610768 -141926491 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 665 26 30 0 0 chr5 10610902 10610935 -141926324 + AT_rich Low_complexity Low_complexity 1 33 0 1 665 278 277 83 74 chr5 10611004 10611193 -141926066 - B3 SINE B2 -8 187 2 1 665 255 56 0 0 chr5 10612585 10612621 -141924638 - L1_Mm LINE L1 -2843 3040 3005 1 665 5042 43 0 2 chr5 10612621 10613227 -141924032 + L1Md_T LINE L1 5978 6582 0 1 665 745 290 32 55 chr5 10614427 10614807 -141922452 - Lx9 LINE L1 -20 7624 7254 1 665 610 204 32 38 chr5 10614829 10614987 -141922272 + Lx9 LINE L1 7097 7253 -391 1 666 195 69 0 0 chr5 10616852 10616881 -141920378 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1 666 257 306 48 0 chr5 10616976 10617038 -141920221 - ID4_ SINE ID -10 73 9 1 666 2279 224 37 58 chr5 10617069 10617299 -141919960 - RMER3D-int LTR ERVK -415 2427 2207 1 666 3246 39 0 0 chr5 10617299 10617688 -141919571 - L1Md_T LINE L1 0 6582 6194 1 666 2279 224 37 58 chr5 10617688 10618245 -141919014 - RMER3D-int LTR ERVK -636 2206 1657 1 666 4561 132 20 16 chr5 10618250 10619614 -141917645 + L1VL4 LINE L1 193 1558 -2001 1 666 4715 156 48 3 chr5 10619605 10620598 -141916661 + L1_Mur1 LINE L1 2911 3948 -1938 1 666 4751 141 10 5 chr5 10620596 10621380 -141915879 + Lx LINE L1 5653 6440 -214 1 666 2313 122 212 27 chr5 10621490 10621970 -141915289 + RLTR6_Mm LTR ERV1 37 605 -49 1 666 50341 16 16 0 chr5 10621970 10628043 -141909216 + RLTR6-int LTR ERV1 1 6170 -1608 1 666 12192 12 13 0 chr5 10628042 10629470 -141907789 + RLTR6-int LTR ERV1 6332 7778 0 1 666 2194 121 220 28 chr5 10629579 10630039 -141907220 + RLTR6_Mm LTR ERV1 37 584 -70 1 666 385 145 0 0 chr5 10630063 10630139 -141907120 + L1_Mus3 LINE L1 6559 6634 -4 1 666 2239 191 26 97 chr5 10630164 10630470 -141906789 - RMER3D-int LTR ERVK -1176 1666 1409 1 666 1147 68 7 0 chr5 10630470 10630616 -141906643 + B1_Mus1 SINE Alu 1 147 -1 1 666 2239 232 46 83 chr5 10630616 10631572 -141905687 - RMER3D-int LTR ERVK -1434 1408 1 1 666 1227 194 121 16 chr5 10631572 10631898 -141905361 - RLTR31A_Mm LTR ERVK 0 584 183 1 666 945 47 8 38 chr5 10631868 10632001 -141905258 + B1_Mus1 SINE Alu 20 148 0 1 666 1376 127 9 0 chr5 10632027 10632240 -141905019 - RLTR31A_Mm LTR ERVK -369 215 1 1 666 1513 212 45 43 chr5 10632457 10632860 -141904399 + RMER16 LTR ERVK 1 533 0 1 666 23 33 0 0 chr5 10634254 10634284 -141902975 + AT_rich Low_complexity Low_complexity 1 30 0 1 666 301 167 0 18 chr5 10634813 10634868 -141902391 + HAL1-3A_ME LINE L1 1959 2012 -846 1 666 861 190 0 0 chr5 10634880 10635059 -141902200 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 666 223 129 0 0 chr5 10635059 10635090 -141902169 + (CACG)n Simple_repeat Simple_repeat 4 34 0 1 666 374 132 13 0 chr5 10636008 10636084 -141901175 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 666 907 281 136 26 chr5 10636194 10636585 -141900674 - RMER1B Other Other -587 479 46 1 666 1759 235 109 10 chr5 10636949 10637645 -141899614 + Lx9 LINE L1 6874 7638 -6 1 666 3374 194 26 15 chr5 10638134 10638946 -141898313 + Lx7 LINE L1 4231 5051 -829 1 666 1889 233 62 62 chr5 10638933 10639577 -141897682 + Lx7 LINE L1 5816 6459 -1237 1 666 434 281 69 90 chr5 10639588 10639910 -141897349 + RLTR12B LTR ERVK 15 296 -232 1 666 321 26 0 0 chr5 10639935 10639973 -141897286 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 666 2558 216 77 34 chr5 10640095 10640748 -141896511 + Lx6 LINE L1 6441 7121 -339 1 666 396 189 191 36 chr5 10640748 10640858 -141896401 + RLTR9A LTR ERVK 1 127 -241 1 666 1645 192 15 63 chr5 10640857 10641252 -141896007 - RMER17C LTR ERVK -34 376 1 1 666 391 288 73 33 chr5 10641252 10641403 -141895856 + RLTR9A LTR ERVK 253 409 0 1 666 561 189 12 19 chr5 10641409 10641571 -141895688 + Lx7 LINE L1 7388 7548 -148 1 666 23 33 0 0 chr5 10641659 10641689 -141895570 + AT_rich Low_complexity Low_complexity 1 30 0 1 666 234 0 0 0 chr5 10642343 10642369 -141894890 + (TC)n Simple_repeat Simple_repeat 1 26 0 1 666 270 0 0 0 chr5 10642369 10642398 -141894861 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 666 216 97 0 0 chr5 10642402 10642433 -141894826 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 666 208 216 0 0 chr5 10642519 10642556 -141894703 + polypyrimidine Low_complexity Low_complexity 4 40 0 1 666 207 100 0 0 chr5 10642565 10642595 -141894664 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 666 474 326 49 35 chr5 10642602 10642948 -141894311 - Lx9 LINE L1 -174 7470 7120 1 666 689 136 0 0 chr5 10642964 10643082 -141894177 - L1_Mus1 LINE L1 0 6567 6450 1 666 1297 201 112 0 chr5 10643132 10643462 -141893797 + Lx4A LINE L1 379 763 -6323 1 666 10638 132 40 44 chr5 10643472 10643798 -141893461 + Lx4A LINE L1 1872 2177 -3700 1 666 770 77 0 71 chr5 10643798 10643938 -141893321 + L1Md_F2 LINE L1 6451 6580 -2 2 666 10638 132 40 44 chr5 10643938 10645252 -141892007 + Lx4A LINE L1 2178 3479 -2398 1 666 765 85 0 0 chr5 10645252 10645358 -141891901 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 2 666 10638 132 40 44 chr5 10645358 10645978 -141891281 + Lx4A LINE L1 3480 4124 -1753 1 666 7299 162 38 33 chr5 10645995 10647459 -141889800 + Lx4A LINE L1 5587 7058 0 1 666 22 56 0 0 chr5 10647465 10647501 -141889758 + AT_rich Low_complexity Low_complexity 1 36 0 2 666 284 207 0 0 chr5 10647599 10647657 -141889602 - Lx9 LINE L1 -644 7000 6943 1 666 1108 76 14 0 chr5 10647833 10647978 -141889281 - B1_Mus1 SINE Alu 0 148 2 2 666 21 0 0 0 chr5 10648140 10648161 -141889098 + AT_rich Low_complexity Low_complexity 1 21 0 2 666 247 272 65 37 chr5 10649666 10649773 -141887486 - Tigger12 DNA MER2_type -1273 686 577 2 666 258 355 95 21 chr5 10649782 10649877 -141887382 + B1F1 SINE Alu 7 108 -41 2 666 210 105 0 0 chr5 10650109 10650147 -141887112 + (A)n Simple_repeat Simple_repeat 1 38 0 2 666 22 0 0 0 chr5 10650208 10650230 -141887029 + AT_rich Low_complexity Low_complexity 1 22 0 2 666 237 300 39 29 chr5 10650734 10650837 -141886422 - L4 LINE RTE -314 1715 1612 2 666 406 364 95 28 chr5 10650955 10651345 -141885914 - MLT1J-int LTR MaLR -592 795 380 2 666 2954 110 20 1 chr5 10651360 10651937 -141885322 - Lx2 LINE L1 -1040 5957 5374 2 666 689 207 91 6 chr5 10651936 10652007 -141885252 + Lx2 LINE L1 6796 6866 -131 2 666 288 0 0 0 chr5 10652007 10652039 -141885220 + (TGGG)n Simple_repeat Simple_repeat 2 33 0 2 666 689 207 91 6 chr5 10652039 10652142 -141885117 + Lx2 LINE L1 6867 6984 -13 2 666 2006 143 38 5 chr5 10652156 10652549 -141884710 - Lx2 LINE L1 -507 5370 4965 2 666 1257 184 85 0 chr5 10652551 10652845 -141884414 + Lx2 LINE L1 5948 6266 -731 2 666 3352 125 18 5 chr5 10652850 10653663 -141883596 - RLTR13C1 LTR ERVK 0 1033 1 2 666 4582 138 7 14 chr5 10653663 10654400 -141882859 + Lx2 LINE L1 6266 6997 0 2 666 429 20 0 0 chr5 10654942 10654992 -141882267 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2 666 1019 88 0 7 chr5 10655021 10655170 -141882089 + (GAAA)n Simple_repeat Simple_repeat 1 148 0 2 666 700 254 20 1 chr5 10655283 10655477 -141881782 + MLT1C LTR MaLR 244 409 -58 2 666 274 98 0 19 chr5 10655569 10655621 -141881638 + RMER1C Other Other 1290 1340 -2 2 666 6793 32 17 4 chr5 10655632 10656465 -141880794 + L1Md_F3 LINE L1 5741 6584 0 2 666 279 0 0 0 chr5 10656493 10656524 -141880735 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 666 725 0 12 0 chr5 10656527 10656612 -141880647 + (GA)n Simple_repeat Simple_repeat 1 86 0 2 666 586 262 107 45 chr5 10656904 10657128 -141880131 - RMER20B LTR ERVK -229 398 161 2 666 498 33 0 0 chr5 10657571 10657631 -141879628 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 666 25 51 0 0 chr5 10657663 10657702 -141879557 + AT_rich Low_complexity Low_complexity 1 39 0 2 666 1757 178 243 38 chr5 10657793 10658353 -141878906 + RMER6C LTR ERVK 16 690 0 2 666 182 91 0 29 chr5 10658385 10658419 -141878840 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 666 782 276 0 0 chr5 10658419 10658618 -141878641 + Lx8 LINE L1 6247 6445 -1028 2 666 1139 295 119 40 chr5 10658631 10659377 -141877882 + Lx8 LINE L1 6669 7473 0 2 666 21 57 0 0 chr5 10660074 10660109 -141877150 + AT_rich Low_complexity Low_complexity 1 35 0 2 666 2915 181 35 86 chr5 10660170 10660981 -141876278 - RMER17D2 LTR ERVK -15 794 26 2 666 212 213 128 0 chr5 10660994 10661041 -141876218 - B3A SINE B2 -112 86 34 2 666 304 156 0 0 chr5 10662167 10662212 -141875047 + B1_Mm SINE Alu 95 139 -8 2 666 612 0 0 0 chr5 10662215 10662283 -141874976 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 2 666 23 0 0 0 chr5 10662611 10662634 -141874625 + AT_rich Low_complexity Low_complexity 1 23 0 2 666 26 64 0 0 chr5 10665406 10665453 -141871806 + AT_rich Low_complexity Low_complexity 1 47 0 2 666 2857 3 6 0 chr5 10665653 10665974 -141871285 - L1Md_T LINE L1 0 6582 6260 2 666 26 74 0 0 chr5 10665974 10666028 -141871231 + AT_rich Low_complexity Low_complexity 1 54 0 2 666 207 139 0 0 chr5 10666437 10666473 -141870786 + (CTTG)n Simple_repeat Simple_repeat 4 39 0 2 666 425 353 8 0 chr5 10666477 10666610 -141870649 - RSINE1 SINE B4 -6 159 26 2 666 23 0 0 0 chr5 10667028 10667051 -141870208 + AT_rich Low_complexity Low_complexity 1 23 0 2 666 2475 72 0 81 chr5 10667206 10667601 -141869658 + L1Md_F2 LINE L1 6220 6582 0 2 666 606 28 0 0 chr5 10667832 10667904 -141869355 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 666 723 354 31 44 chr5 10668715 10669099 -141868160 + RMER15-int LTR ERVL 1493 1871 -3128 2 666 190 88 40 240 chr5 10669101 10669176 -141868083 + L4 LINE RTE 1789 1848 -181 2 666 614 247 77 107 chr5 10669889 10670161 -141867098 + RMER15-int LTR ERVL 4652 4915 -84 2 666 786 186 171 0 chr5 10670193 10670386 -141866873 + URR1A DNA MER1_type 1 226 0 2 666 270 339 55 33 chr5 10670587 10670770 -141866489 + RMER15 LTR ERVL 373 559 -16 2 666 527 315 80 5 chr5 10673190 10673391 -141863868 - B3 SINE B2 0 216 1 2 666 258 335 98 75 chr5 10673594 10673849 -141863410 + MIR SINE MIR 2 262 0 2 666 22 35 0 0 chr5 10676003 10676032 -141861227 + AT_rich Low_complexity Low_complexity 1 29 0 2 666 23 86 0 0 chr5 10676190 10676248 -141861011 + AT_rich Low_complexity Low_complexity 1 58 0 2 666 1080 285 131 54 chr5 10676297 10676370 -141860889 - Lx8 LINE L1 -127 7346 7277 2 666 1662 129 104 13 chr5 10676370 10676668 -141860591 - ORR1A3 LTR MaLR -1 325 1 2 666 1080 285 131 54 chr5 10676668 10677151 -141860108 - Lx8 LINE L1 -197 7276 6747 2 666 1950 214 34 5 chr5 10677259 10677704 -141859555 + RMER6B LTR ERVK 1 458 -3 2 666 1722 192 0 7 chr5 10677707 10678016 -141859243 + MYSERV6-int LTR ERVK 2 308 -8651 2 666 5540 214 75 23 chr5 10678022 10679622 -141857637 - ORR1A3-int LTR MaLR -195 1768 291 2 666 1186 227 74 113 chr5 10679824 10680296 -141856963 - Lx7 LINE L1 -16 7680 7106 2 666 842 243 193 26 chr5 10680301 10680762 -141856497 - RLTR20C LTR ERVK 0 541 1 2 666 892 269 54 34 chr5 10680781 10681077 -141856182 + RLTR16 LTR ERVK 1 302 -203 2 666 5465 157 66 12 chr5 10681461 10682586 -141854673 - MYSERV16_I-int LTR ERVK -75 2251 1067 2 666 3360 204 85 41 chr5 10682591 10683515 -141853744 - MYSERV16_I-int LTR ERVK -1461 1381 1 2 666 248 302 228 41 chr5 10685812 10685957 -141851302 + MLT1J LTR MaLR 229 400 -112 2 666 333 339 25 0 chr5 10686789 10686910 -141850349 - L1M2 LINE L1 -1037 5106 4983 2 666 431 305 92 32 chr5 10686966 10687455 -141849804 + L1M2 LINE L1 5142 5663 -649 2 666 273 57 0 0 chr5 10687485 10687520 -141849739 + (T)n Simple_repeat Simple_repeat 1 35 0 2 666 1123 62 7 0 chr5 10687520 10687665 -141849594 - B1_Mus1 SINE Alu 0 148 3 2 666 348 257 182 26 chr5 10691112 10691304 -141845955 - Lx9 LINE L1 -240 7404 7183 2 666 231 36 0 0 chr5 10691311 10691339 -141845920 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 666 311 188 65 65 chr5 10691343 10691451 -141845808 + Lx9 LINE L1 7522 7629 -15 2 666 234 128 0 0 chr5 10693003 10693042 -141844217 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 666 287 246 31 39 chr5 10693816 10693943 -141843316 - Lx6 LINE L1 -11 7449 7324 2 666 2555 47 4 1 chr5 10694155 10694478 -141842781 + L1Md_F2 LINE L1 5282 5586 -297 2 666 8267 36 1 4 chr5 10694479 10695477 -141841782 + L1Md_F2 LINE L1 5588 6582 0 2 666 232 125 0 91 chr5 10695616 10695660 -141841599 - ORR1D1 LTR MaLR -8 366 327 2 666 1744 196 181 13 chr5 10695660 10696042 -141841217 + RLTR41 LTR ERV1 1 446 0 2 666 311 317 51 51 chr5 10696720 10696896 -141840363 + MuRRS4-int LTR ERV1 587 762 -6794 2 666 1106 306 77 38 chr5 10697328 10698489 -141838770 + MuRRS4-int LTR ERV1 1051 2423 -5355 2 666 1816 307 51 55 chr5 10698545 10700177 -141837082 + MuRRS4-int LTR ERV1 2929 5610 -1996 2 666 932 310 17 8 chr5 10700444 10700802 -141836457 + RLTR6-int LTR ERV1 7328 7688 -90 2 666 518 215 0 9 chr5 10700920 10701028 -141836231 + RLTR41 LTR ERV1 3 109 -337 2 666 1146 234 45 81 chr5 10701053 10701411 -141835848 - ORR1D1 LTR MaLR -29 345 1 2 666 2563 244 54 8 chr5 10701428 10702033 -141835226 - ORR1D1-int LTR MaLR -36 1334 702 2 666 626 199 149 23 chr5 10702033 10702107 -141835152 + RMER15 LTR ERVL 1 81 -494 2 666 1871 74 11 11 chr5 10702107 10702379 -141834880 + L1_Mus3 LINE L1 6367 6638 0 2 666 626 199 149 23 chr5 10702379 10702479 -141834780 + RMER15 LTR ERVL 82 196 -379 2 666 1058 77 0 40 chr5 10702481 10702630 -141834629 + B1_Mm SINE Alu 5 147 0 2 666 324 0 0 0 chr5 10702630 10702666 -141834593 + (A)n Simple_repeat Simple_repeat 1 36 0 2 666 1798 213 51 15 chr5 10702696 10703087 -141834172 + RMER15 LTR ERVL 167 571 -4 2 666 2011 185 36 2 chr5 10703098 10703509 -141833750 - L1_Mur1 LINE L1 -418 5459 5035 2 666 7884 218 99 19 chr5 10703551 10705385 -141831874 - L1_Mur1 LINE L1 -2153 3724 1706 2 666 1138 83 0 0 chr5 10705385 10705530 -141831729 - B1_Mus2 SINE Alu -2 145 1 2 666 7884 218 99 19 chr5 10705530 10705997 -141831262 - L1_Mur1 LINE L1 -4172 1705 1236 2 666 4422 109 26 9 chr5 10705997 10706688 -141830571 - L1_Mus3 LINE L1 -1 6637 5935 2 666 7884 210 24 12 chr5 10706688 10706749 -141830510 - L1_Mur1 LINE L1 -5745 1239 1176 2 666 1526 209 19 63 chr5 10707210 10707741 -141829518 - L1_Mur1 LINE L1 -5444 1190 666 2 666 516 122 0 0 chr5 10708533 10708615 -141828644 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 666 540 326 40 10 chr5 10708846 10709044 -141828215 - B3 SINE B2 -11 205 2 2 666 419 323 90 58 chr5 10709708 10710020 -141827239 - L1M5 LINE L1 -612 5628 5307 2 666 268 219 16 0 chr5 10710057 10710121 -141827138 + (TGG)n Simple_repeat Simple_repeat 3 67 0 2 666 201 39 0 0 chr5 10710124 10710150 -141827109 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 666 3711 55 2 6 chr5 10710277 10710753 -141826506 - L1Md_F2 LINE L1 -12 6570 6097 2 666 323 373 22 27 chr5 10710808 10711031 -141826228 - L1M5 LINE L1 -1043 5103 4882 2 666 493 92 0 52 chr5 10711546 10711645 -141825614 - L1_Mus1 LINE L1 -4 6578 6481 2 666 266 365 0 34 chr5 10711850 10711938 -141825321 - AmnSINE1 SINE SINE -484 91 7 2 666 27 49 0 0 chr5 10712629 10712670 -141824589 + AT_rich Low_complexity Low_complexity 1 41 0 2 666 526 265 29 0 chr5 10712970 10713106 -141824153 - B1_Mur2 SINE Alu 0 149 10 2 666 231 188 0 0 chr5 10713109 10713157 -141824102 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 666 28 29 0 0 chr5 10713162 10713197 -141824062 + AT_rich Low_complexity Low_complexity 1 35 0 2 666 5176 136 27 22 chr5 10713209 10714090 -141823169 - Lx3B LINE L1 -7 6966 6081 2 666 3346 144 31 3 chr5 10714091 10714880 -141822379 - Lx3B LINE L1 -333 6321 5469 2 666 258 341 40 0 chr5 10714968 10715094 -141822165 - B1F SINE Alu -1 148 18 2 666 2961 72 10 5 chr5 10715195 10715589 -141821670 + MTA_Mm LTR MaLR 1 396 0 2 666 22 0 0 0 chr5 10715601 10715623 -141821636 + AT_rich Low_complexity Low_complexity 1 22 0 2 666 271 299 13 13 chr5 10716160 10716238 -141821021 + B1F1 SINE Alu 61 138 -11 2 666 216 289 24 73 chr5 10717034 10717157 -141820102 - MIRc SINE MIR 0 268 152 2 666 254 278 11 0 chr5 10717642 10717732 -141819527 + Lx4B LINE L1 6961 7051 -7 3 666 9871 58 1 2 chr5 10717801 10719753 -141817506 - L1Md_F2 LINE L1 0 6582 4632 3 666 2004 246 91 11 chr5 10719988 10720538 -141816721 - Lx2B LINE L1 -3 6997 6404 3 666 1123 168 14 5 chr5 10720545 10720755 -141816504 + Lx2B LINE L1 6200 6411 -589 3 666 244 362 14 21 chr5 10721218 10721362 -141815897 + B1_Mur2 SINE Alu 5 147 -2 3 666 371 357 82 0 chr5 10721433 10721629 -141815630 + MTEa LTR MaLR 148 359 -20 3 666 631 283 81 5 chr5 10721922 10722107 -141815152 + B3 SINE B2 4 202 -14 3 666 441 0 0 0 chr5 10722233 10722282 -141814977 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 666 26 0 0 0 chr5 10722302 10722328 -141814931 + AT_rich Low_complexity Low_complexity 1 26 0 3 666 828 285 46 35 chr5 10722440 10722724 -141814535 + RMER15 LTR ERVL 276 562 -13 3 666 279 71 0 0 chr5 10722863 10722905 -141814354 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 3 666 1002 218 157 33 chr5 10723183 10723515 -141813744 + ORR1D1 LTR MaLR 1 373 -1 3 666 1269 272 16 50 chr5 10723517 10723665 -141813594 + ORR1D1-int LTR MaLR 2 146 -1224 3 666 1334 68 5 35 chr5 10723665 10723862 -141813397 + L1_Mus1 LINE L1 6377 6567 0 3 666 1269 272 16 50 chr5 10723862 10724089 -141813170 + ORR1D1-int LTR MaLR 147 364 -1006 3 666 671 259 10 44 chr5 10724108 10724314 -141812945 + ORR1D1-int LTR MaLR 483 681 -689 3 666 707 243 23 23 chr5 10724338 10724515 -141812744 + ORR1D1-int LTR MaLR 1194 1370 0 3 666 762 246 90 11 chr5 10724518 10724707 -141812552 + ORR1D1 LTR MaLR 5 208 -166 3 666 6450 70 1 1 chr5 10724707 10725539 -141811720 - L1Md_F2 LINE L1 -1 6581 5750 3 666 614 225 34 9 chr5 10725539 10725713 -141811546 + ORR1D1 LTR MaLR 188 421 0 3 666 21 36 0 0 chr5 10725994 10726022 -141811237 + AT_rich Low_complexity Low_complexity 1 28 0 3 666 1072 59 20 0 chr5 10726210 10726362 -141810897 + (TCTCCC)n Simple_repeat Simple_repeat 6 160 0 3 666 25 83 0 0 chr5 10727004 10727064 -141810195 + AT_rich Low_complexity Low_complexity 1 60 0 3 666 342 169 0 0 chr5 10728044 10728109 -141809150 + T-rich Low_complexity Low_complexity 1 65 0 3 666 1107 95 0 0 chr5 10728112 10728259 -141809000 - B1_Mus1 SINE Alu 0 148 2 3 666 220 318 61 0 chr5 10729587 10729653 -141807606 - PB1D10 SINE Alu -5 112 43 3 666 414 57 0 0 chr5 10729742 10729795 -141807464 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 666 489 34 0 0 chr5 10730051 10730110 -141807149 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 666 294 73 0 0 chr5 10730111 10730152 -141807107 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 666 1030 333 75 8 chr5 10730695 10731188 -141806071 + Lx8 LINE L1 6258 6783 -690 3 666 452 328 84 59 chr5 10731225 10731617 -141805642 + Lx8 LINE L1 6873 7274 -199 3 666 660 38 0 0 chr5 10732059 10732138 -141805121 - L1Md_F2 LINE L1 -242 6340 6262 3 666 2038 37 0 0 chr5 10732139 10732382 -141804877 + L1Md_T LINE L1 6339 6581 -1 3 666 21 0 0 0 chr5 10732461 10732482 -141804777 + AT_rich Low_complexity Low_complexity 1 21 0 3 666 3330 124 6 29 chr5 10732664 10733211 -141804048 + Lx LINE L1 6118 6651 -3 3 666 23 33 0 0 chr5 10734293 10734323 -141802936 + AT_rich Low_complexity Low_complexity 1 30 0 3 666 2575 163 98 100 chr5 10734535 10735147 -141802112 - RMER19C LTR ERVK 0 611 1 3 666 365 276 10 20 chr5 10735241 10735341 -141801918 + B2_Mm2 SINE B2 1 99 -96 3 666 525 325 120 68 chr5 10735725 10736444 -141800815 + L1ME3A LINE L1 5304 6059 -114 3 666 21 36 0 0 chr5 10738802 10738830 -141798429 + AT_rich Low_complexity Low_complexity 1 28 0 3 666 41 0 0 0 chr5 10738857 10738898 -141798361 + AT_rich Low_complexity Low_complexity 1 41 0 3 666 234 0 0 0 chr5 10739214 10739240 -141798019 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 666 387 0 0 0 chr5 10739240 10739282 -141797977 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 666 441 0 0 0 chr5 10740113 10740162 -141797097 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 666 24 0 0 0 chr5 10741317 10741341 -141795918 + AT_rich Low_complexity Low_complexity 1 24 0 3 666 29885 136 53 6 chr5 10742339 10743594 -141793665 + L1_Mus1 LINE L1 425 1734 -4149 3 666 1007 104 0 0 chr5 10743594 10743729 -141793530 + B1_Mm SINE Alu 1 135 -12 3 666 252 0 0 0 chr5 10743729 10743757 -141793502 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 83 29885 110 5 15 chr5 10743757 10748631 -141788628 + L1_Mus1 LINE L1 1735 6567 0 3 667 28 0 0 0 chr5 10748648 10748676 -141788583 + AT_rich Low_complexity Low_complexity 1 28 0 3 667 333 61 0 0 chr5 10748676 10748725 -141788534 + L1_Mus2 LINE L1 6518 6566 0 3 667 1026 207 171 20 chr5 10748742 10749087 -141788172 - RCHARR1 DNA MER1_type -268 706 310 3 667 21 36 0 0 chr5 10749236 10749264 -141787995 + AT_rich Low_complexity Low_complexity 1 28 0 3 667 24 53 0 0 chr5 10749322 10749360 -141787899 + AT_rich Low_complexity Low_complexity 1 38 0 3 667 3375 173 29 17 chr5 10750840 10751428 -141785831 - RLTR17 LTR ERVK 0 692 98 3 667 1518 285 66 8 chr5 10751576 10752061 -141785198 + Lx6 LINE L1 6944 7456 -4 3 667 258 241 0 0 chr5 10752263 10752321 -141784938 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 667 826 81 8 8 chr5 10752326 10752451 -141784808 + (GAAA)n Simple_repeat Simple_repeat 4 128 0 3 667 616 124 18 9 chr5 10752451 10752565 -141784694 + GA-rich Low_complexity Low_complexity 5 119 0 3 667 412 253 151 21 chr5 10752579 10752724 -141784535 - B3A SINE B2 -34 161 1 3 667 829 331 60 31 chr5 10752799 10753248 -141784011 + Lx8 LINE L1 6806 7267 -206 3 667 919 250 17 38 chr5 10753568 10753677 -141783582 + RMER6D LTR ERVK 1 108 -612 3 667 1806 167 9 58 chr5 10753677 10754021 -141783238 + ORR1A2 LTR MaLR 1 327 0 3 667 919 250 17 38 chr5 10754021 10754148 -141783111 + RMER6D LTR ERVK 109 232 -488 3 667 242 194 14 0 chr5 10754175 10754247 -141783012 + (CAGTT)n Simple_repeat Simple_repeat 2 74 0 3 667 5291 181 43 81 chr5 10754349 10756002 -141781257 - ORR1B1-int LTR MaLR 0 1963 8 3 667 10325 217 50 21 chr5 10756002 10758267 -141778992 - L1_Mur3 LINE L1 -939 4941 2584 3 667 1067 99 0 0 chr5 10758267 10758409 -141778850 + B1_Mus1 SINE Alu 2 143 -5 3 667 10325 217 50 21 chr5 10758409 10758957 -141778302 - L1_Mur3 LINE L1 -3297 2583 2047 3 667 264 346 0 0 chr5 10758960 10759041 -141778218 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 667 857 241 100 17 chr5 10759297 10759588 -141777671 - L1_Mur3 LINE L1 -6538 1190 876 3 667 429 119 0 15 chr5 10760065 10760133 -141777126 - RMER13B LTR ERVK -545 363 297 3 667 1629 212 42 31 chr5 10760134 10760519 -141776740 + Lx3C LINE L1 6574 6962 -14 3 667 21 0 0 0 chr5 10760644 10760665 -141776594 + AT_rich Low_complexity Low_complexity 1 21 0 3 667 244 301 95 12 chr5 10760878 10760962 -141776297 + B3A SINE B2 3 93 -105 3 667 2394 298 76 88 chr5 10761107 10761439 -141775820 + L1_Mur3 LINE L1 2196 2535 -3345 3 667 434 0 0 0 chr5 10761439 10761491 -141775768 + L1Md_F2 LINE L1 6517 6568 -14 3 667 306 0 0 0 chr5 10761496 10761530 -141775729 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 667 2394 298 76 88 chr5 10761530 10762068 -141775191 + L1_Mur3 LINE L1 2536 3051 -2829 3 667 387 0 0 0 chr5 10762068 10762111 -141775148 + (CTAAA)n Simple_repeat Simple_repeat 3 45 0 3 667 2394 298 76 88 chr5 10762111 10762264 -141774995 + L1_Mur3 LINE L1 3052 3221 -2659 3 667 1044 95 109 29 chr5 10762264 10762438 -141774821 + B2_Mm2 SINE B2 1 188 -7 3 667 2394 298 76 88 chr5 10762438 10762483 -141774776 + L1_Mur3 LINE L1 3222 3243 -2637 3 667 458 284 4 101 chr5 10762483 10762710 -141774549 - B3 SINE B2 -11 205 1 3 667 2394 298 76 88 chr5 10762710 10763262 -141773997 + L1_Mur3 LINE L1 3244 3760 -2120 3 667 1125 95 0 0 chr5 10763262 10763409 -141773850 - B1_Mus1 SINE Alu 0 148 2 3 667 2394 298 76 88 chr5 10763409 10763644 -141773615 + L1_Mur3 LINE L1 3761 4001 -1879 3 667 2738 93 12 10 chr5 10763644 10764046 -141773213 + RLTR9D LTR ERVK 1 403 0 3 667 2394 298 76 88 chr5 10764046 10764061 -141773198 + L1_Mur3 LINE L1 4002 4013 -1867 3 667 210 37 0 0 chr5 10764061 10764088 -141773171 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 667 2394 298 76 88 chr5 10764088 10764436 -141772823 + L1_Mur3 LINE L1 4014 4417 -1463 3 667 2800 186 21 118 chr5 10764436 10765199 -141772060 + RMER6C LTR ERVK 1 689 -1 3 667 2394 298 76 88 chr5 10765199 10765291 -141771968 + L1_Mur3 LINE L1 4418 4499 -1381 3 667 486 49 0 0 chr5 10765291 10765352 -141771907 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 667 2394 298 76 88 chr5 10765352 10765623 -141771636 + L1_Mur3 LINE L1 4500 4740 -1140 3 667 270 0 0 0 chr5 10765623 10765653 -141771606 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 667 2394 298 76 88 chr5 10765653 10765943 -141771316 + L1_Mur3 LINE L1 4741 5043 -837 3 667 703 318 53 46 chr5 10765931 10766234 -141771025 + Lx8 LINE L1 6805 7109 -364 3 667 637 326 0 6 chr5 10766251 10766433 -141770826 + Lx8 LINE L1 7169 7349 -124 3 667 399 248 0 9 chr5 10766425 10766475 -141770784 + Lx9 LINE L1 7368 7417 -227 3 667 534 16 0 0 chr5 10766475 10766538 -141770721 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 667 399 248 0 9 chr5 10766538 10766597 -141770662 + Lx9 LINE L1 7418 7476 -168 3 667 207 0 0 0 chr5 10766605 10766628 -141770631 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 667 1196 267 32 55 chr5 10767603 10767948 -141769311 - Lx6 LINE L1 -27 7433 7097 3 667 1956 234 19 149 chr5 10767957 10768647 -141768612 + RMER19C LTR ERVK 12 611 0 3 667 625 238 7 13 chr5 10768647 10768796 -141768463 - Lx6 LINE L1 -358 7102 6955 3 667 2533 292 46 34 chr5 10768792 10769643 -141767616 + RMER1C Other Other 467 1327 -15 3 667 319 274 10 0 chr5 10769841 10769943 -141767316 + (TATATG)n Simple_repeat Simple_repeat 3 105 0 3 667 227 216 0 19 chr5 10770108 10770160 -141767099 - MTE2b LTR MaLR 0 379 329 3 667 876 235 35 10 chr5 10770226 10770428 -141766831 + Lx6 LINE L1 6650 6856 -604 3 667 1043 215 88 0 chr5 10770700 10770986 -141766273 - RMER1B Other Other -177 889 592 3 667 257 174 0 21 chr5 10771067 10771114 -141766145 - MTE2b LTR MaLR -330 49 4 3 667 2618 35 0 0 chr5 10771243 10771556 -141765703 + L1Md_T LINE L1 6269 6581 -1 3 667 37 52 0 0 chr5 10771618 10771676 -141765583 + AT_rich Low_complexity Low_complexity 1 58 0 3 667 661 243 108 80 chr5 10771676 10771962 -141765297 - Lx5 LINE L1 -3 7047 6754 3 667 7803 171 121 24 chr5 10771940 10772422 -141764837 - L1_Mur2 LINE L1 -782 5095 4596 3 667 7254 52 1 7 chr5 10772422 10773336 -141763923 + L1Md_F2 LINE L1 5673 6581 -1 3 667 7803 171 121 24 chr5 10773336 10774434 -141762825 - L1_Mur2 LINE L1 -1282 4595 3306 3 667 336 24 0 0 chr5 10774434 10774475 -141762784 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 667 7803 171 121 24 chr5 10774475 10774590 -141762669 - L1_Mur2 LINE L1 -2572 3305 3201 3 667 1272 95 10 16 chr5 10774590 10774783 -141762476 + L1_Mus2 LINE L1 6375 6566 0 3 667 7803 180 109 22 chr5 10774783 10774948 -141762311 - L1_Mur2 LINE L1 -2684 3202 3064 3 667 7781 68 0 7 chr5 10775435 10776491 -141760768 - L1Md_F2 LINE L1 0 6582 5536 3 667 1461 183 90 3 chr5 10776497 10776801 -141760458 - IAPEY3_LTR LTR ERVK -6 469 1 3 667 4761 104 14 22 chr5 10776801 10777694 -141759565 - IAPEY3-int LTR ERVK 0 7581 6743 3 667 3411 88 2 2 chr5 10777684 10778138 -141759121 - IAPEY3-int LTR ERVK -1367 6214 5761 3 667 3198 86 16 16 chr5 10778133 10778569 -141758690 - IAPEY3-int LTR ERVK -1943 5638 5203 3 667 6462 36 15 4 chr5 10778821 10779623 -141757636 - IAPLTR4_I LTR ERVK -649 821 11 3 667 1505 171 92 0 chr5 10779623 10779916 -141757343 - IAPEY3_LTR LTR ERVK -12 320 1 3 667 283 266 292 35 chr5 10779916 10780060 -141757199 - B3A SINE B2 -16 182 2 3 667 820 307 61 38 chr5 10780188 10780533 -141756726 + ORR1D1 LTR MaLR 19 371 -3 3 667 377 280 135 17 chr5 10780560 10780615 -141756644 + Lx8 LINE L1 7273 7327 -146 3 667 186 43 0 0 chr5 10780615 10780638 -141756621 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 667 377 280 135 17 chr5 10780638 10780760 -141756499 + Lx8 LINE L1 7328 7470 -3 3 667 185 0 40 0 chr5 10780812 10780837 -141756422 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 667 1073 82 14 0 chr5 10780846 10780992 -141756267 - B1_Mus1 SINE Alu 0 148 1 4 667 1641 29 58 0 chr5 10781424 10781630 -141755629 - L1Md_F3 LINE L1 -14 6570 6353 4 667 2082 189 135 80 chr5 10782295 10782949 -141754310 + RMER6C LTR ERVK 1 690 0 4 667 2531 208 120 10 chr5 10783196 10783804 -141753455 - RLTR33 LTR ERVK 0 678 4 4 667 1239 98 19 7 chr5 10784136 10784337 -141752922 - B2_Mm2 SINE B2 -2 214 2 4 667 231 114 0 0 chr5 10784442 10784486 -141752773 + (T)n Simple_repeat Simple_repeat 1 44 0 4 667 449 340 109 11 chr5 10784805 10785070 -141752189 + B4A SINE B4 2 292 0 4 667 234 204 37 0 chr5 10785093 10785147 -141752112 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 667 999 224 22 35 chr5 10785954 10786181 -141751078 - RMER6B LTR ERVK -16 445 222 4 667 25 31 0 0 chr5 10786197 10786229 -141751030 + AT_rich Low_complexity Low_complexity 1 32 0 4 667 1043 200 37 0 chr5 10786231 10786446 -141750813 - RMER6B LTR ERVK -238 223 1 4 667 712 130 9 0 chr5 10786458 10786566 -141750693 - MYSERV6-int LTR ERVK -1205 7754 7646 4 667 696 86 0 41 chr5 10786577 10786698 -141750561 - Lx LINE L1 -3 6651 6536 4 667 6535 140 284 21 chr5 10786698 10788148 -141749111 - L1_Mm LINE L1 -74 5809 3978 4 667 721 76 34 0 chr5 10788150 10788269 -141748990 + L1Md_F3 LINE L1 6461 6583 -1 4 667 846 131 47 10 chr5 10788441 10788633 -141748626 + L1_Mm LINE L1 4419 4610 -1536 4 667 4322 162 20 5 chr5 10788617 10789403 -141747856 - L1_Mur2 LINE L1 -1384 4493 3696 4 667 414 241 0 0 chr5 10789423 10789510 -141747749 - MYSERV-int LTR ERVK -2854 3696 3610 4 667 1451 284 22 55 chr5 10789514 10790002 -141747257 - Lx6 LINE L1 -4 7456 6985 4 667 721 197 27 43 chr5 10790033 10790219 -141747040 - MYSERV6-int LTR ERVK -5125 3834 3652 4 667 2030 73 4 4 chr5 10790219 10790495 -141746764 - L1_Mus1 LINE L1 0 6567 6292 4 667 1648 69 0 98 chr5 10790495 10790751 -141746508 + L1_Mus1 LINE L1 6037 6267 -300 4 667 1379 165 47 17 chr5 10790752 10791048 -141746211 - MYSERV6-int LTR ERVK -5300 3659 3355 4 667 348 261 35 21 chr5 10791062 10791211 -141746048 - RLTR11A2 LTR ERVK -10 518 307 4 667 516 299 79 88 chr5 10791278 10791619 -141745640 - RLTR11A2 LTR ERVK -189 338 1 4 667 643 152 9 0 chr5 10791620 10791732 -141745527 - MYSERV6-int LTR ERVK -5603 3356 3244 4 667 1517 187 59 28 chr5 10791743 10792100 -141745159 - MYSERV6-int LTR ERVK -5885 3074 2707 4 667 3400 170 36 28 chr5 10792067 10792812 -141744447 - MYSERV6-int LTR ERVK -6930 2029 1279 4 667 2521 196 23 6 chr5 10792835 10793307 -141743952 - RLTR19 LTR ERVK 0 499 20 4 667 4930 175 47 87 chr5 10793310 10794496 -141742763 - MYSERV6-int LTR ERVK -7818 1141 3 4 667 1724 217 30 55 chr5 10794497 10794970 -141742289 - RMER6B LTR ERVK 0 461 1 4 667 825 291 58 13 chr5 10794972 10795257 -141742002 + Lx6 LINE L1 6245 6748 -712 4 667 219 69 0 0 chr5 10795257 10795286 -141741973 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 4 667 825 288 72 16 chr5 10795286 10795374 -141741885 + Lx6 LINE L1 6749 6853 -607 4 667 1489 193 259 14 chr5 10795374 10795924 -141741335 + RMER6D LTR ERVK 2 690 0 4 667 1085 272 26 41 chr5 10795929 10796281 -141740978 + Lx6 LINE L1 6965 7254 -206 4 667 1672 231 59 5 chr5 10796282 10796602 -141740657 + ORR1B1 LTR MaLR 1 342 -52 4 667 1230 98 88 0 chr5 10796602 10796796 -141740463 + L1Md_F2 LINE L1 6371 6581 -1 4 667 1672 231 59 5 chr5 10796796 10796849 -141740410 + ORR1B1 LTR MaLR 343 394 0 4 667 2582 210 84 114 chr5 10796856 10797099 -141740160 + ORR1B1-int LTR MaLR 1166 1407 -556 4 667 3201 48 8 0 chr5 10797099 10797492 -141739767 - MTA_Mm LTR MaLR 0 396 1 4 667 2582 214 83 111 chr5 10797492 10798029 -141739230 + ORR1B1-int LTR MaLR 1408 1905 -58 4 667 1839 209 39 16 chr5 10798038 10798423 -141738836 + ORR1B1 LTR MaLR 1 394 0 4 667 627 292 6 0 chr5 10798426 10798604 -141738655 + Lx6 LINE L1 7256 7434 -26 4 667 227 241 17 0 chr5 10798604 10798662 -141738597 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 4 667 606 306 36 59 chr5 10798886 10799105 -141738154 + B3 SINE B2 2 215 -1 4 667 27 0 0 0 chr5 10799155 10799182 -141738077 + AT_rich Low_complexity Low_complexity 1 27 0 4 667 258 32 0 0 chr5 10800511 10800542 -141736717 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 667 198 0 0 0 chr5 10800852 10800874 -141736385 + (CATG)n Simple_repeat Simple_repeat 1 22 0 4 667 204 222 27 27 chr5 10801016 10801090 -141736169 + T-rich Low_complexity Low_complexity 4 77 0 4 667 394 332 120 17 chr5 10801385 10801618 -141735641 - MER47B DNA MER2_type -160 258 2 4 667 321 135 0 0 chr5 10802577 10802629 -141734630 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 667 932 208 30 5 chr5 10802971 10803174 -141734085 + Lx9 LINE L1 7255 7462 -182 4 667 477 76 0 0 chr5 10803177 10803243 -141734016 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 667 339 25 0 0 chr5 10803814 10803854 -141733405 + (CTAA)n Simple_repeat Simple_repeat 4 43 0 4 667 22 0 0 0 chr5 10804015 10804037 -141733222 + AT_rich Low_complexity Low_complexity 1 22 0 4 667 217 68 45 0 chr5 10804655 10804699 -141732560 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 4 667 22 0 0 0 chr5 10805226 10805248 -141732011 + AT_rich Low_complexity Low_complexity 1 22 0 4 667 25 0 0 0 chr5 10805517 10805542 -141731717 + AT_rich Low_complexity Low_complexity 1 25 0 4 667 4961 133 21 9 chr5 10805920 10806802 -141730457 + MusHAL1 LINE L1 281 1173 -1539 4 667 22 35 0 0 chr5 10806836 10806865 -141730394 + AT_rich Low_complexity Low_complexity 1 29 0 4 667 26 0 0 0 chr5 10807096 10807122 -141730137 + AT_rich Low_complexity Low_complexity 1 26 0 4 667 5686 259 71 28 chr5 10808909 10810806 -141726453 - Lx6 LINE L1 -1 7459 5487 4 667 21 82 0 0 chr5 10811212 10811261 -141725998 + AT_rich Low_complexity Low_complexity 1 49 0 4 667 1058 116 0 0 chr5 10811295 10811442 -141725817 + B1_Mus1 SINE Alu 2 148 0 4 667 902 167 0 6 chr5 10811465 10811646 -141725613 + GA-rich Low_complexity Low_complexity 1 180 0 4 667 1331 85 30 0 chr5 10811651 10811851 -141725408 + L1_Mus1 LINE L1 6361 6566 -1 4 667 246 292 130 33 chr5 10812412 10812504 -141724755 - RMER15 LTR ERVL -132 443 343 4 667 911 203 21 5 chr5 10812529 10812717 -141724542 - RMER6C LTR ERVK 0 690 500 4 667 730 188 32 7 chr5 10812810 10812965 -141724294 - RMER6C LTR ERVK -367 353 195 4 667 207 25 24 48 chr5 10812998 10813040 -141724219 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 4 667 5069 182 63 118 chr5 10813040 10813497 -141723762 + L1_Mur2 LINE L1 3173 3657 -2220 4 667 270 273 15 15 chr5 10813497 10813627 -141723632 + ORR1B1-int LTR MaLR 625 754 -755 4 667 1000 87 0 0 chr5 10813528 10813666 -141723593 + B1_Mm SINE Alu 9 146 -1 4 667 5069 182 63 118 chr5 10813666 10814556 -141722703 + L1_Mur2 LINE L1 3658 4604 -1273 4 667 2816 213 48 2 chr5 10814537 10815177 -141722082 + L1_Mur2 LINE L1 5123 5792 -85 4 667 15545 195 29 25 chr5 10815181 10815341 -141721918 + Lx2 LINE L1 2305 2466 -3420 4 667 4121 51 2 2 chr5 10815341 10815848 -141721411 + L1Md_F2 LINE L1 6075 6581 -1 4 667 15545 195 29 25 chr5 10815848 10816264 -141720995 + Lx2 LINE L1 2467 2870 -3016 4 667 1091 119 6 0 chr5 10816264 10816440 -141720819 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 4 667 15545 195 29 25 chr5 10816440 10818167 -141719092 + Lx2 LINE L1 2871 4580 -1306 4 667 5832 96 9 8 chr5 10818167 10819009 -141718250 + Lx3_Mus LINE L1 6167 7009 0 4 667 15545 186 26 20 chr5 10819009 10820249 -141717010 + Lx2 LINE L1 4581 5861 -1136 4 667 201 39 0 0 chr5 10820249 10820275 -141716984 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 4 667 4739 154 15 2 chr5 10820275 10820808 -141716451 + Lx2 LINE L1 5862 6402 -595 4 667 4658 148 32 35 chr5 10820798 10821723 -141715536 + L1Md_T LINE L1 283 1205 -5411 4 667 36341 32 0 0 chr5 10821729 10826146 -141711113 + L1Md_T LINE L1 1170 5586 -297 4 667 8038 53 0 0 chr5 10826146 10827142 -141710117 + L1Md_T LINE L1 5587 6582 0 4 667 698 136 0 0 chr5 10827148 10827258 -141710001 + Lx2 LINE L1 6387 6496 -501 4 667 1082 46 6 19 chr5 10827258 10827414 -141709845 + L1Md_F2 LINE L1 6428 6581 -1 4 667 2452 148 77 17 chr5 10827412 10827892 -141709367 + Lx2 LINE L1 6489 6997 0 4 667 2973 220 47 7 chr5 10827893 10828906 -141708353 + Lx5 LINE L1 5789 7038 -12 4 667 893 156 6 0 chr5 10828907 10829074 -141708185 + GA-rich Low_complexity Low_complexity 2 169 0 4 667 20176 104 6 20 chr5 10829075 10832910 -141704349 + L1Md_F2 LINE L1 405 4180 -1703 4 667 314 98 0 0 chr5 10832906 10832957 -141704302 - L1_Mur2 LINE L1 -1400 4477 4427 4 667 6534 89 17 2 chr5 10832982 10833933 -141703326 + L1Md_F2 LINE L1 5536 6500 -82 4 667 588 95 0 0 chr5 10833961 10834045 -141703214 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 4 667 654 204 23 0 chr5 10835763 10835895 -141701364 + B1_Mus1 SINE Alu 5 139 -9 4 667 248 172 0 17 chr5 10835903 10835962 -141701297 + GA-rich Low_complexity Low_complexity 1 58 0 4 667 852 314 35 19 chr5 10835972 10836287 -141700972 + Lx7 LINE L1 6347 6666 -1030 4 667 1413 183 24 2 chr5 10836364 10836822 -141700437 + L1_Mur1 LINE L1 831 1368 -4518 4 667 6100 144 11 31 chr5 10836817 10837894 -141699365 - L1_Mus3 LINE L1 -366 5517 4462 4 667 6832 119 6 13 chr5 10837891 10838981 -141698278 + L1_Mus3 LINE L1 5538 6619 -19 4 667 3059 20 0 0 chr5 10838981 10839327 -141697932 + ORR1A0 LTR MaLR 1 346 0 4 667 1102 179 32 14 chr5 10839358 10839635 -141697624 + L1_Mur1 LINE L1 1346 1627 -4259 4 667 5670 173 35 9 chr5 10839632 10840776 -141696483 + MusHAL1 LINE L1 950 2123 -589 4 667 6832 133 24 9 chr5 10840763 10841896 -141695363 + Lx LINE L1 5493 6649 -5 4 667 8274 175 32 7 chr5 10841890 10843569 -141693690 + L1_Mur1 LINE L1 3306 5026 -860 4 667 5153 193 31 15 chr5 10843576 10844688 -141692571 + Lx3C LINE L1 5843 6971 -5 4 667 1326 291 97 10 chr5 10844716 10845203 -141692056 + Lx7 LINE L1 6702 7230 -466 4 667 221 200 16 16 chr5 10845277 10845338 -141691921 + T-rich Low_complexity Low_complexity 2 62 0 4 667 22 35 0 0 chr5 10845429 10845458 -141691801 + AT_rich Low_complexity Low_complexity 1 29 0 4 667 614 347 57 40 chr5 10846393 10846816 -141690443 + Lx8 LINE L1 6266 6695 -778 4 667 4479 147 20 14 chr5 10846875 10847607 -141689652 - RMER19A LTR ERVK 0 737 1 4 667 978 91 38 0 chr5 10847624 10847756 -141689503 + B1_Mus2 SINE Alu 1 137 -10 4 667 1065 310 40 62 chr5 10847772 10848214 -141689045 + Lx8 LINE L1 6781 7212 -261 4 667 3877 70 8 6 chr5 10848214 10848715 -141688544 - RLTR1C LTR ERV1 -1 502 1 4 667 1065 310 40 62 chr5 10848715 10848771 -141688488 + Lx8 LINE L1 7213 7268 -205 4 667 976 244 53 21 chr5 10848825 10849068 -141688191 - Lx8 LINE L1 -849 6624 6374 4 667 265 353 67 29 chr5 10849236 10849341 -141687918 + PB1D7 SINE Alu 11 119 -1 4 667 294 317 69 38 chr5 10849931 10850062 -141687197 - ID_B1 SINE B4 -9 215 81 4 667 283 235 10 39 chr5 10850080 10850182 -141687077 + CT-rich Low_complexity Low_complexity 5 103 0 4 667 324 70 0 0 chr5 10850458 10850501 -141686758 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4 667 519 17 0 0 chr5 10850656 10850716 -141686543 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 667 21 36 0 0 chr5 10851920 10851948 -141685311 + AT_rich Low_complexity Low_complexity 1 28 0 4 667 236 337 71 71 chr5 10852936 10853134 -141684125 - B3A SINE B2 0 198 1 4 667 2058 112 6 0 chr5 10853251 10853565 -141683694 + Lx3_Mus LINE L1 6694 7009 0 4 667 209 100 50 0 chr5 10853783 10853823 -141683436 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 4 667 29 28 0 0 chr5 10854071 10854107 -141683152 + AT_rich Low_complexity Low_complexity 1 36 0 4 667 660 225 7 26 chr5 10854522 10854677 -141682582 - Lx7 LINE L1 -334 7362 7211 4 667 904 261 16 25 chr5 10854685 10854916 -141682343 + Lx7 LINE L1 6811 7040 -656 5 667 1077 77 0 7 chr5 10854916 10855054 -141682205 + B1_Mm SINE Alu 2 139 -8 5 667 189 74 0 0 chr5 10855054 10855081 -141682178 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 667 904 261 16 25 chr5 10855081 10855097 -141682162 + Lx7 LINE L1 7041 7052 -644 5 667 417 182 40 10 chr5 10855348 10855448 -141681811 - L1_Mur3 LINE L1 -4225 1655 1553 5 667 1684 192 105 6 chr5 10855877 10856228 -141681031 + ORR1B1 LTR MaLR 1 386 -8 5 667 341 181 0 89 chr5 10856561 10856640 -141680619 + MT2B LTR ERVL 197 268 -333 5 667 641 160 0 0 chr5 10856571 10856671 -141680588 + B1_Mus2 SINE Alu 48 147 0 5 667 205 200 0 0 chr5 10856673 10856713 -141680546 + A-rich Low_complexity Low_complexity 1 40 0 5 667 231 200 26 13 chr5 10857212 10857288 -141679971 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 667 2343 203 27 22 chr5 10857367 10858003 -141679256 + Lx5 LINE L1 5278 5922 -1128 5 667 1059 293 43 8 chr5 10858014 10858403 -141678856 + Lx5 LINE L1 5990 6417 -633 5 667 385 273 127 9 chr5 10860536 10860742 -141676517 + L1MA8 LINE L1 5794 6012 -177 5 667 248 355 66 0 chr5 10861389 10861510 -141675749 + Lx9 LINE L1 7060 7188 -456 5 667 370 314 102 40 chr5 10861972 10862148 -141675111 - RMER5 LTR ERV1 -117 417 231 5 667 264 163 0 0 chr5 10862650 10862699 -141674560 + Lx2A1 LINE L1 4350 4398 -1479 5 667 1365 139 9 0 chr5 10862725 10862955 -141674304 - Lx2A1 LINE L1 -1247 4630 4399 5 667 7726 167 18 28 chr5 10862962 10865327 -141671932 + Lx2A1 LINE L1 4652 7000 -8 5 667 755 269 129 139 chr5 10865361 10865801 -141671458 - RMER6B LTR ERVK -25 436 1 5 667 372 88 0 0 chr5 10867932 10867989 -141669270 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 667 280 272 68 0 chr5 10870843 10870946 -141666313 + B1_Mur4 SINE Alu 19 128 -22 5 667 362 240 100 8 chr5 10871356 10871486 -141665773 - B3 SINE B2 -2 214 73 5 667 3346 191 66 5 chr5 10872268 10873030 -141664229 - RMER17D2 LTR ERVK 0 809 2 5 667 294 87 0 0 chr5 10873742 10873788 -141663471 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 667 612 40 0 0 chr5 10873998 10874073 -141663186 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 667 468 35 0 0 chr5 10874073 10874130 -141663129 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 667 3072 199 56 39 chr5 10874407 10875298 -141661961 + L1_Mur2 LINE L1 3074 3979 -1898 5 667 45 0 0 0 chr5 10876806 10876851 -141660408 + AT_rich Low_complexity Low_complexity 1 45 0 5 667 545 186 9 0 chr5 10876890 10877003 -141660256 + L1_Mur2 LINE L1 4105 4218 -1659 5 667 1314 209 3 9 chr5 10877005 10877333 -141659926 - ORR1A4-int LTR MaLR -920 1043 718 5 667 677 188 18 204 chr5 10877225 10877499 -141659760 - MT2B LTR ERVL -344 257 35 5 667 2935 203 28 66 chr5 10877383 10878126 -141659133 - ORR1A4-int LTR MaLR -1234 729 15 5 667 869 242 133 75 chr5 10878136 10878444 -141658815 - ORR1A4 LTR MaLR -1 328 3 5 667 1803 180 3 0 chr5 10878450 10878772 -141658487 - ORR1A2 LTR MaLR 0 327 5 5 83 6353 148 45 7 chr5 10878776 10879909 -141657350 - ORR1A2-int LTR MaLR 0 1963 788 5 668 240 313 23 46 chr5 10879899 10879986 -141657273 - RMER6B LTR ERVK -80 381 297 5 668 24 91 0 0 chr5 10880048 10880114 -141657145 + AT_rich Low_complexity Low_complexity 1 66 0 5 668 1550 143 66 0 chr5 10880127 10880386 -141656873 - L1_Mus4 LINE L1 -6 6630 6355 5 668 697 198 108 12 chr5 10880434 10880691 -141656568 - RMER6B LTR ERVK -251 210 1 5 668 1675 196 38 82 chr5 10880916 10881316 -141655943 + RLTR41 LTR ERV1 65 446 0 5 668 755 153 0 68 chr5 10881347 10881480 -141655779 - B2_Mm2 SINE B2 -70 125 2 5 668 413 202 34 0 chr5 10881597 10881686 -141655573 - RLTR19 LTR ERVK -1 498 404 5 668 445 173 0 0 chr5 10884029 10884110 -141653149 + L1_Mur1 LINE L1 3359 3439 -2438 5 668 732 80 0 0 chr5 10884110 10884210 -141653049 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 5 668 7671 160 38 8 chr5 10884210 10885694 -141651565 + L1_Mur1 LINE L1 3498 5026 -860 5 668 5219 197 27 12 chr5 10885701 10886813 -141650446 + Lx3C LINE L1 5843 6971 -5 5 668 1218 306 80 4 chr5 10886841 10887340 -141649919 + Lx7 LINE L1 6702 7238 -458 5 668 22 35 0 0 chr5 10887549 10887578 -141649681 + AT_rich Low_complexity Low_complexity 1 29 0 5 668 180 306 79 30 chr5 10887856 10887957 -141649302 - L4 LINE RTE -630 1399 1294 5 668 594 337 56 56 chr5 10888510 10888953 -141648306 + Lx8 LINE L1 6253 6695 -778 5 668 4438 142 23 14 chr5 10889012 10889742 -141647517 - RMER19A LTR ERVK 0 737 1 5 668 942 98 38 0 chr5 10889759 10889891 -141647368 + B1_Mus2 SINE Alu 1 137 -10 5 668 1077 303 40 58 chr5 10889905 10890345 -141646914 + Lx8 LINE L1 6781 7215 -258 5 668 3901 69 16 4 chr5 10890345 10890842 -141646417 - RLTR1C LTR ERV1 0 503 1 5 668 1077 303 40 58 chr5 10890842 10890898 -141646361 + Lx8 LINE L1 7216 7268 -205 5 668 916 264 20 31 chr5 10890952 10891206 -141646053 - Lx8 LINE L1 -849 6624 6374 5 668 306 333 67 29 chr5 10891379 10891484 -141645775 + PB1D7 SINE Alu 11 119 -1 5 668 286 323 68 38 chr5 10892073 10892205 -141645054 - ID_B1 SINE B4 -8 216 81 5 668 426 151 0 0 chr5 10892222 10892295 -141644964 + C-rich Low_complexity Low_complexity 3 75 0 5 668 438 20 0 0 chr5 10892625 10892676 -141644583 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 5 668 429 54 0 0 chr5 10892833 10892889 -141644370 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 668 21 36 0 0 chr5 10894522 10894550 -141642709 + AT_rich Low_complexity Low_complexity 1 28 0 5 668 2097 93 13 6 chr5 10895824 10896138 -141641121 + Lx3_Mus LINE L1 6694 7009 0 5 668 216 129 97 0 chr5 10896274 10896336 -141640923 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 5 668 209 100 50 0 chr5 10896365 10896405 -141640854 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 5 668 205 195 0 0 chr5 10896447 10896488 -141640771 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 668 29 28 0 0 chr5 10896657 10896693 -141640566 + AT_rich Low_complexity Low_complexity 1 36 0 5 668 24 0 0 0 chr5 10896911 10896935 -141640324 + AT_rich Low_complexity Low_complexity 1 24 0 5 668 681 217 49 18 chr5 10897107 10897271 -141639988 - Lx7 LINE L1 -317 7379 7211 5 668 896 272 12 25 chr5 10897279 10897511 -141639748 + Lx7 LINE L1 6811 7040 -656 5 668 1080 70 0 7 chr5 10897511 10897649 -141639610 + B1_Mm SINE Alu 2 139 -8 5 668 189 74 0 0 chr5 10897649 10897676 -141639583 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 668 896 272 12 25 chr5 10897676 10897692 -141639567 + Lx7 LINE L1 7041 7052 -644 5 668 359 192 40 10 chr5 10897945 10898045 -141639214 - L1_Mur3 LINE L1 -4225 1655 1553 5 668 1635 195 105 6 chr5 10898474 10898825 -141638434 + ORR1B1 LTR MaLR 1 386 -8 5 668 339 181 0 89 chr5 10899159 10899238 -141638021 + MT2B LTR ERVL 197 268 -333 5 668 639 160 0 0 chr5 10899169 10899269 -141637990 + B1_Mus2 SINE Alu 48 147 0 5 668 184 158 17 17 chr5 10899823 10899881 -141637378 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 668 2313 200 29 23 chr5 10899959 10900594 -141636665 + Lx6 LINE L1 5278 5919 -1541 5 668 993 298 33 2 chr5 10900605 10900994 -141636265 + Lx6 LINE L1 5990 6417 -633 5 668 23 33 0 0 chr5 10903056 10903086 -141634173 + AT_rich Low_complexity Low_complexity 1 30 0 5 668 328 267 138 7 chr5 10903149 10903350 -141633909 + L1MA8 LINE L1 5803 6028 -272 5 668 5043 27 0 0 chr5 10905093 10905687 -141631572 - L1_Mm LINE L1 -968 4915 4322 5 668 3251 40 2 0 chr5 10905687 10906083 -141631176 + L1Md_T LINE L1 6184 6580 -2 5 668 216 0 0 0 chr5 10906109 10906133 -141631126 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 5 668 300 239 270 15 chr5 10906460 10906660 -141630599 - Lx9 LINE L1 -7 7637 7387 5 668 514 227 117 0 chr5 10906659 10906787 -141630472 + Lx9 LINE L1 7244 7386 -258 5 668 416 116 0 5 chr5 10906825 10906900 -141630359 + ORR1B2 LTR MaLR 306 394 0 5 668 723 226 191 0 chr5 10906900 10907104 -141630155 + ORR1B2-int LTR MaLR 1 243 -1266 5 668 2542 168 116 2 chr5 10907118 10907602 -141629657 - Lx2 LINE L1 -1 6996 6458 5 668 1578 211 77 10 chr5 10907604 10907666 -141629593 + ORR1B2-int LTR MaLR 200 268 -1241 5 668 204 40 0 0 chr5 10907666 10907691 -141629568 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 5 668 1578 211 77 10 chr5 10907691 10908020 -141629239 + ORR1B2-int LTR MaLR 269 616 -893 5 668 4577 145 29 35 chr5 10908025 10908930 -141628329 + L1Md_T LINE L1 307 1205 -5411 5 668 36228 32 0 0 chr5 10908936 10913352 -141623907 + L1Md_T LINE L1 1170 5586 -297 5 668 8012 55 0 0 chr5 10913352 10914348 -141622911 + L1Md_T LINE L1 5587 6582 0 5 668 3161 230 42 53 chr5 10914348 10915146 -141622113 + ORR1B2-int LTR MaLR 615 1403 -106 5 668 1083 88 0 0 chr5 10915146 10915293 -141621966 + B1_Mm SINE Alu 1 147 0 5 668 3161 230 42 53 chr5 10915293 10915307 -141621952 + ORR1B2-int LTR MaLR 1404 1416 -93 5 668 603 0 0 0 chr5 10915307 10915374 -141621885 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 5 668 3161 230 42 53 chr5 10915374 10915465 -141621794 + ORR1B2-int LTR MaLR 1417 1507 -2 5 668 1043 188 267 27 chr5 10915465 10915761 -141621498 + ORR1B2 LTR MaLR 1 367 0 5 668 241 336 34 50 chr5 10917916 10918035 -141619224 - MTE2a LTR MaLR -15 364 248 5 668 340 292 68 37 chr5 10918129 10918304 -141618955 - MTE2a LTR MaLR -218 161 18 5 668 297 261 0 0 chr5 10918546 10918611 -141618648 + RMER2 LTR ERV1 15 79 -488 5 668 629 258 153 88 chr5 10918600 10918940 -141618319 + RMER2 LTR ERV1 190 551 -16 5 668 29 60 0 0 chr5 10919281 10919331 -141617928 + AT_rich Low_complexity Low_complexity 1 50 0 5 668 22 0 0 0 chr5 10919786 10919808 -141617451 + AT_rich Low_complexity Low_complexity 1 22 0 5 668 2388 158 87 14 chr5 10919808 10920245 -141617014 - Lx4A LINE L1 0 7058 6590 5 668 480 334 54 51 chr5 10920524 10920919 -141616340 + MTEa LTR MaLR 6 368 -11 5 668 2112 102 10 3 chr5 10921167 10921471 -141615788 + L1_Mus3 LINE L1 6331 6636 -2 5 668 220 296 68 27 chr5 10921800 10921873 -141615386 - L2c LINE L2 -33 3354 3279 5 668 441 36 0 0 chr5 10923052 10923107 -141614152 + (TTTTG)n Simple_repeat Simple_repeat 4 58 0 5 668 873 231 45 74 chr5 10923123 10923502 -141613757 + RLTR9A LTR ERVK 1 368 0 5 668 2462 215 11 17 chr5 10923742 10924276 -141612983 - Lx2A1 LINE L1 -5 7003 6473 5 668 234 0 0 0 chr5 10924836 10924862 -141612397 + (T)n Simple_repeat Simple_repeat 1 26 0 5 668 251 401 72 7 chr5 10924958 10925096 -141612163 + B1F2 SINE Alu 3 149 0 5 668 23943 33 2 0 chr5 10926304 10929207 -141608052 + L1Md_T LINE L1 2678 5586 -297 5 668 8185 45 0 0 chr5 10929207 10930203 -141607056 + L1Md_T LINE L1 5587 6582 0 5 668 359 348 78 19 chr5 10930256 10930461 -141606798 - FordPrefect DNA Tip100 -393 1290 1074 5 668 537 311 28 37 chr5 10931116 10931330 -141605929 + B3 SINE B2 5 216 0 5 668 30 45 0 0 chr5 10931374 10931418 -141605841 + AT_rich Low_complexity Low_complexity 1 44 0 5 668 472 321 113 17 chr5 10931613 10931905 -141605354 - Lx8 LINE L1 -453 7020 6701 5 668 475 308 14 7 chr5 10931967 10932111 -141605148 + RSINE1 SINE B4 4 148 -17 5 668 337 302 142 19 chr5 10932191 10932353 -141604906 + B3A SINE B2 1 182 -16 5 668 459 216 0 0 chr5 10932369 10932480 -141604779 + (CA)n Simple_repeat Simple_repeat 1 111 0 5 668 30 27 0 0 chr5 10932481 10932518 -141604741 + AT_rich Low_complexity Low_complexity 1 37 0 5 668 27 87 0 0 chr5 10933766 10933835 -141603424 + AT_rich Low_complexity Low_complexity 1 69 0 6 668 23 78 0 0 chr5 10933860 10933911 -141603348 + AT_rich Low_complexity Low_complexity 1 51 0 6 668 369 0 0 0 chr5 10934109 10934150 -141603109 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 668 249 324 0 58 chr5 10934463 10934653 -141602606 + GA-rich Low_complexity Low_complexity 2 180 0 6 668 312 297 18 54 chr5 10934718 10934885 -141602374 + GA-rich Low_complexity Low_complexity 1 161 0 6 668 486 174 42 0 chr5 10934885 10935029 -141602230 + (CAGAGA)n Simple_repeat Simple_repeat 2 151 0 6 668 233 325 60 0 chr5 10935029 10935112 -141602147 - MLT1A0 LTR MaLR -191 174 87 6 668 1416 348 87 32 chr5 10935382 10936507 -141600752 - Lx8 LINE L1 -215 7258 6072 6 668 1709 181 32 20 chr5 10936507 10936912 -141600347 - RMER17C LTR ERVK 0 410 1 6 668 1416 348 87 32 chr5 10936912 10936923 -141600336 - Lx8 LINE L1 -1402 6071 6060 6 668 1443 252 109 43 chr5 10937065 10937207 -141600052 + RMER2 LTR ERV1 3 188 -379 6 668 405 0 0 0 chr5 10937207 10937252 -141600007 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 668 1443 252 109 43 chr5 10937252 10937639 -141599620 + RMER2 LTR ERV1 189 567 0 6 668 21 71 0 0 chr5 10938840 10938882 -141598377 + AT_rich Low_complexity Low_complexity 1 42 0 6 668 663 88 9 17 chr5 10938882 10938997 -141598262 + (TA)n Simple_repeat Simple_repeat 2 115 0 6 668 254 280 27 0 chr5 10938998 10939073 -141598186 + RMER2 LTR ERV1 491 567 0 6 668 231 214 33 11 chr5 10939100 10939158 -141598101 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 668 992 104 0 0 chr5 10939158 10939292 -141597967 + B1_Mm SINE Alu 1 134 -13 6 668 231 214 33 11 chr5 10939292 10939323 -141597936 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 668 741 118 0 0 chr5 10939323 10939442 -141597817 + (GA)n Simple_repeat Simple_repeat 2 120 0 6 668 737 265 64 26 chr5 10940357 10940621 -141596638 + ORR1D1 LTR MaLR 1 283 -87 6 668 781 275 34 5 chr5 10940659 10940867 -141596392 + ORR1D1 LTR MaLR 158 371 -3 6 668 2034 55 0 4 chr5 10941647 10941901 -141595358 - L1_Mus1 LINE L1 -229 6338 6086 6 668 1802 72 0 4 chr5 10941902 10942140 -141595119 + L1_Mus1 LINE L1 6330 6566 -1 6 668 573 352 25 40 chr5 10942181 10942456 -141594803 + MTEa LTR MaLR 103 373 -6 6 668 1166 223 99 27 chr5 10942457 10942871 -141594388 - Lx9 LINE L1 -28 7616 7173 6 668 22 0 0 0 chr5 10943034 10943056 -141594203 + AT_rich Low_complexity Low_complexity 1 22 0 6 668 261 277 0 12 chr5 10943151 10943235 -141594024 + L1M2 LINE L1 5417 5499 -792 6 668 254 314 23 23 chr5 10943473 10943649 -141593610 + L1M2 LINE L1 5572 5747 -442 6 668 533 76 13 0 chr5 10943754 10943833 -141593426 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 6 668 233 149 0 21 chr5 10944349 10944397 -141592862 + Lx2A1 LINE L1 4352 4398 -1479 6 668 1273 146 13 0 chr5 10944414 10944653 -141592606 - Lx2A1 LINE L1 -1237 4640 4399 6 668 7378 168 18 30 chr5 10944660 10947029 -141590230 + Lx2A1 LINE L1 4652 7000 -8 6 668 683 275 129 153 chr5 10947060 10947511 -141589748 - RMER6B LTR ERVK -21 440 1 6 668 365 123 0 66 chr5 10949687 10949748 -141587511 - HAL1-3A_ME LINE L1 -824 2034 1978 6 668 285 272 68 0 chr5 10952619 10952722 -141584537 + B1_Mur4 SINE Alu 19 128 -22 6 668 363 240 100 8 chr5 10953131 10953261 -141583998 - B3 SINE B2 -2 214 73 6 668 3510 184 54 13 chr5 10954044 10954820 -141582439 - RMER17D2 LTR ERVK 0 809 2 6 668 225 65 0 0 chr5 10955534 10955565 -141581694 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 668 663 100 0 0 chr5 10955759 10955869 -141581390 + (TC)n Simple_repeat Simple_repeat 1 110 0 6 668 303 28 0 0 chr5 10955869 10955905 -141581354 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 668 2814 205 54 40 chr5 10956182 10957076 -141580183 + L1_Mur2 LINE L1 3074 3979 -1898 6 668 215 138 50 33 chr5 10958579 10958639 -141578620 + A-rich Low_complexity Low_complexity 6 66 0 6 668 449 221 9 0 chr5 10958664 10958777 -141578482 + L1_Mur2 LINE L1 4105 4218 -1659 6 668 1327 206 3 9 chr5 10958779 10959107 -141578152 - ORR1A4-int LTR MaLR -920 1043 718 6 668 699 210 14 197 chr5 10958994 10959273 -141577986 - MT2B LTR ERVL -339 262 35 6 668 2876 209 32 41 chr5 10959215 10959922 -141577337 - ORR1A4-int LTR MaLR -1258 705 5 6 668 913 234 133 74 chr5 10959926 10960235 -141577024 - ORR1A4 LTR MaLR 0 329 3 6 668 1838 171 3 0 chr5 10960241 10960563 -141576696 - ORR1A2 LTR MaLR 0 327 5 6 668 6278 150 49 7 chr5 10960567 10961696 -141575563 - ORR1A2-int LTR MaLR 0 1963 788 6 668 274 254 27 53 chr5 10961686 10961761 -141575498 - RMER6B LTR ERVK -80 381 309 6 668 25 90 0 0 chr5 10961832 10961899 -141575360 + AT_rich Low_complexity Low_complexity 1 67 0 6 668 1782 134 0 0 chr5 10961912 10962188 -141575071 - L1_Mus4 LINE L1 -6 6630 6355 6 668 679 189 111 12 chr5 10962237 10962493 -141574766 - RMER6B LTR ERVK -251 210 1 6 668 22 0 0 0 chr5 10962665 10962687 -141574572 + AT_rich Low_complexity Low_complexity 1 22 0 6 668 1712 196 38 82 chr5 10962718 10963118 -141574141 + RLTR41 LTR ERV1 65 446 0 6 668 758 153 0 68 chr5 10963149 10963282 -141573977 - B2_Mm2 SINE B2 -70 125 2 6 668 419 202 34 0 chr5 10963399 10963488 -141573771 - RLTR19 LTR ERVK -1 498 404 6 668 27 29 0 0 chr5 10964116 10964150 -141573109 + AT_rich Low_complexity Low_complexity 1 34 0 6 668 583 282 161 30 chr5 10965877 10966144 -141571115 + RMER5 LTR ERV1 231 532 -2 6 668 496 209 40 71 chr5 10967264 10967516 -141569743 - RMER17C LTR ERVK -68 342 5 6 668 21 0 0 0 chr5 10967818 10967839 -141569420 + AT_rich Low_complexity Low_complexity 1 21 0 6 668 27726 120 53 47 chr5 10967889 10969222 -141568037 + L1Md_T LINE L1 516 1809 -4074 6 668 5638 83 8 5 chr5 10969222 10969981 -141567278 - L1_Mus1 LINE L1 0 6567 5807 6 668 27726 56 96 1 chr5 10969981 10973374 -141563885 + L1Md_T LINE L1 1810 5585 -298 6 668 8426 32 3 0 chr5 10973374 10974367 -141562892 + L1Md_T LINE L1 5587 6582 0 6 668 269 321 80 29 chr5 10974380 10974518 -141562741 + B1F2 SINE Alu 2 146 -3 6 668 3663 112 33 2 chr5 10974540 10975085 -141562174 + Lx2 LINE L1 6436 6997 0 6 668 11436 129 8 5 chr5 10975107 10977799 -141559460 + L1_Mus3 LINE L1 3923 6619 -19 6 668 3011 29 0 0 chr5 10977799 10978145 -141559114 + ORR1A0 LTR MaLR 1 346 0 6 668 558 0 0 0 chr5 10978172 10978234 -141559025 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 668 966 191 36 0 chr5 10978238 10978489 -141558770 + Lx LINE L1 1368 1627 -4259 6 668 3745 189 163 8 chr5 10978488 10979501 -141557758 + Lx LINE L1 2160 3329 -2557 6 668 7406 162 28 18 chr5 10979488 10982327 -141554932 + Lx LINE L1 3257 6647 -7 6 668 5388 185 29 14 chr5 10982334 10983446 -141553813 + Lx3C LINE L1 5843 6971 -5 6 668 1180 299 81 6 chr5 10983469 10983961 -141553298 + Lx7 LINE L1 6702 7230 -466 6 668 22 35 0 0 chr5 10984197 10984226 -141553033 + AT_rich Low_complexity Low_complexity 1 29 0 6 668 624 339 52 39 chr5 10985168 10985607 -141551652 + Lx8 LINE L1 6253 6697 -776 6 668 4421 152 18 14 chr5 10985668 10986396 -141550863 - RMER19A LTR ERVK -6 731 1 6 668 929 99 38 0 chr5 10986413 10986544 -141550715 + B1_Mus2 SINE Alu 1 136 -11 6 668 946 301 40 60 chr5 10986559 10987000 -141550259 + Lx8 LINE L1 6781 7215 -258 6 668 4043 70 0 4 chr5 10987000 10987505 -141549754 - RLTR1C LTR ERV1 0 503 1 6 668 946 301 40 60 chr5 10987505 10987561 -141549698 + Lx8 LINE L1 7216 7268 -205 6 668 817 228 0 0 chr5 10987690 10987870 -141549389 - Lx8 LINE L1 -924 6549 6370 6 668 309 333 67 29 chr5 10988035 10988140 -141549119 + PB1D7 SINE Alu 11 119 -1 6 668 282 311 71 39 chr5 10988729 10988856 -141548403 - ID_B1 SINE B4 -8 216 86 6 668 395 162 12 0 chr5 10988875 10988955 -141548304 + CT-rich Low_complexity Low_complexity 3 83 0 6 668 21 0 0 0 chr5 10989003 10989024 -141548235 + AT_rich Low_complexity Low_complexity 1 21 0 6 668 459 0 0 0 chr5 10989279 10989330 -141547929 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6 668 414 0 0 0 chr5 10989487 10989533 -141547726 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 668 21 36 0 0 chr5 10991162 10991190 -141546069 + AT_rich Low_complexity Low_complexity 1 28 0 6 668 283 335 65 70 chr5 10992149 10992348 -141544911 - B3A SINE B2 0 198 1 6 668 2135 93 13 6 chr5 10992465 10992779 -141544480 + Lx3_Mus LINE L1 6694 7009 0 6 668 216 129 97 0 chr5 10992914 10992976 -141544283 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 6 668 209 100 50 0 chr5 10993005 10993045 -141544214 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 6 668 205 195 0 0 chr5 10993087 10993128 -141544131 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 668 29 28 0 0 chr5 10993297 10993333 -141543926 + AT_rich Low_complexity Low_complexity 1 36 0 6 668 24 0 0 0 chr5 10993551 10993575 -141543684 + AT_rich Low_complexity Low_complexity 1 24 0 6 668 615 230 7 19 chr5 10993756 10993911 -141543348 - Lx7 LINE L1 -333 7363 7211 6 668 830 268 12 25 chr5 10993919 10994151 -141543108 + Lx7 LINE L1 6811 7040 -656 6 668 1094 70 0 7 chr5 10994151 10994289 -141542970 + B1_Mm SINE Alu 2 139 -8 6 668 189 74 0 0 chr5 10994289 10994316 -141542943 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 668 830 268 12 25 chr5 10994316 10994332 -141542927 + Lx7 LINE L1 7041 7052 -644 6 668 332 192 40 10 chr5 10994585 10994685 -141542574 - L1_Mur3 LINE L1 -4225 1655 1553 6 668 1616 198 105 6 chr5 10995115 10995466 -141541793 + ORR1B1 LTR MaLR 1 386 -8 6 668 343 181 0 89 chr5 10995800 10995879 -141541380 + MT2B LTR ERVL 197 268 -333 6 668 652 150 0 0 chr5 10995810 10995910 -141541349 + B1_Mus2 SINE Alu 48 147 0 6 668 184 158 17 17 chr5 10996464 10996522 -141540737 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 668 2145 205 26 21 chr5 10996600 10997235 -141540024 + Lx6 LINE L1 5278 5919 -1541 6 668 887 292 47 10 chr5 10997246 10997635 -141539624 + Lx6 LINE L1 5990 6417 -633 6 668 23 33 0 0 chr5 10999698 10999728 -141537531 + AT_rich Low_complexity Low_complexity 1 30 0 6 668 340 263 139 7 chr5 10999790 10999992 -141537267 + L1MA5A LINE L1 5802 6029 -271 6 668 251 273 91 0 chr5 11000637 11000725 -141536534 + Lx9 LINE L1 7060 7155 -489 1 668 4989 32 0 0 chr5 11001737 11002331 -141534928 - L1_Mm LINE L1 -968 4915 4322 2 668 3234 45 2 0 chr5 11002331 11002728 -141534531 + L1Md_T LINE L1 6184 6581 -1 3 668 216 0 0 0 chr5 11002755 11002779 -141534480 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 4 668 229 209 176 15 chr5 11003106 11003237 -141534022 - Lx9 LINE L1 -7 7637 7486 5 668 465 250 117 0 chr5 11003305 11003433 -141533826 + Lx9 LINE L1 7244 7386 -258 1 668 263 157 0 38 chr5 11003471 11003524 -141533735 + ORR1B2 LTR MaLR 312 362 -22 6 668 321 256 12 0 chr5 11003527 11003613 -141533646 + ORR1B2-int LTR MaLR 157 243 -1266 6 668 2444 174 116 2 chr5 11003627 11004111 -141533148 - Lx2 LINE L1 -1 6996 6458 7 668 4706 217 80 29 chr5 11004113 11005266 -141531993 + ORR1B2-int LTR MaLR 200 1425 -84 6 668 1148 69 0 0 chr5 11005266 11005410 -141531849 + B1_Mus2 SINE Alu 1 144 -3 8 668 315 0 0 0 chr5 11005410 11005445 -141531814 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 668 4706 217 80 29 chr5 11005445 11005536 -141531723 + ORR1B2-int LTR MaLR 1426 1508 -1 6 668 971 194 267 27 chr5 11005536 11005832 -141531427 + ORR1B2 LTR MaLR 1 367 0 6 668 582 41 0 0 chr5 11005845 11005918 -141531341 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 668 7941 57 1 1 chr5 11006793 11007839 -141529420 - L1Md_F2 LINE L1 0 6582 5536 1 668 14007 74 2 1 chr5 11007832 11009731 -141527528 + L1_Mm LINE L1 1892 3791 -2092 1 669 493 297 109 122 chr5 11011008 11011319 -141525940 - MTE2a LTR MaLR -15 364 58 1 669 343 231 0 0 chr5 11011638 11011703 -141525556 + RMER2 LTR ERV1 15 79 -488 1 669 376 282 99 123 chr5 11011701 11012033 -141525226 + RMER2 LTR ERV1 228 551 -16 1 669 21 57 0 0 chr5 11012375 11012410 -141524849 + AT_rich Low_complexity Low_complexity 1 35 0 1 669 22 0 0 0 chr5 11012879 11012901 -141524358 + AT_rich Low_complexity Low_complexity 1 22 0 1 669 2289 172 87 14 chr5 11012901 11013338 -141523921 - Lx4A LINE L1 0 7058 6590 1 669 414 319 62 122 chr5 11013608 11014011 -141523248 + MTE2a LTR MaLR 1 379 0 1 669 2036 106 13 3 chr5 11014252 11014555 -141522704 + L1_Mus3 LINE L1 6331 6636 -2 1 669 205 309 70 30 chr5 11014852 11014952 -141522307 - L2c LINE L2 -5 3382 3279 2 669 246 32 0 0 chr5 11016130 11016161 -141521098 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 2 669 916 218 45 74 chr5 11016177 11016554 -141520705 + RLTR9A LTR ERVK 1 366 -2 2 669 14151 12 0 0 chr5 11016808 11018423 -141518836 + L1Md_A LINE L1 3972 5586 -297 2 669 8644 22 1 0 chr5 11018423 11019418 -141517841 + L1Md_A LINE L1 5587 6582 0 2 669 2681 203 13 9 chr5 11019489 11020017 -141517242 - Lx2A1 LINE L1 -6 7002 6473 2 669 210 364 65 43 chr5 11020712 11020741 -141516518 + ID_B1 SINE B4 84 224 0 2 669 270 352 92 9 chr5 11020741 11020850 -141516409 + B1F2 SINE Alu 32 149 0 2 669 269 361 83 12 chr5 11021909 11022077 -141515182 - FordPrefect DNA Tip100 -174 1509 1330 2 669 296 361 82 18 chr5 11022091 11022311 -141514948 - FordPrefect DNA Tip100 -393 1290 1057 2 669 21 0 0 0 chr5 11022609 11022630 -141514629 + AT_rich Low_complexity Low_complexity 1 21 0 2 669 209 209 0 0 chr5 11022828 11022871 -141514388 + T-rich Low_complexity Low_complexity 3 45 0 2 669 649 332 14 24 chr5 11024092 11024305 -141512954 + B3 SINE B2 6 216 0 3 669 34 72 0 0 chr5 11024349 11024418 -141512841 + AT_rich Low_complexity Low_complexity 1 69 0 3 669 1387 40 79 0 chr5 11024571 11024731 -141512528 + B2_Mm1t SINE B2 1 160 -33 3 669 243 0 0 0 chr5 11024731 11024758 -141512501 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 669 1387 40 79 0 chr5 11024758 11024774 -141512485 + B2_Mm1t SINE B2 161 189 -4 3 669 494 305 93 21 chr5 11024808 11025099 -141512160 - Lx8 LINE L1 -453 7020 6701 3 669 427 322 14 7 chr5 11025161 11025305 -141511954 + RSINE1 SINE B4 4 148 -17 3 669 297 299 154 31 chr5 11025385 11025547 -141511712 + B3A SINE B2 1 182 -16 3 669 759 206 0 0 chr5 11025567 11025747 -141511512 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 669 30 27 0 0 chr5 11025779 11025816 -141511443 + AT_rich Low_complexity Low_complexity 1 37 0 3 669 27 87 0 0 chr5 11027064 11027133 -141510126 + AT_rich Low_complexity Low_complexity 1 69 0 3 669 23 78 0 0 chr5 11027158 11027209 -141510050 + AT_rich Low_complexity Low_complexity 1 51 0 4 669 351 0 0 0 chr5 11027407 11027446 -141509813 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 669 282 318 0 53 chr5 11027761 11027950 -141509309 + GA-rich Low_complexity Low_complexity 2 180 0 4 669 328 291 18 54 chr5 11028015 11028182 -141509077 + GA-rich Low_complexity Low_complexity 1 161 0 4 669 498 174 42 0 chr5 11028182 11028326 -141508933 + (CAGAGA)n Simple_repeat Simple_repeat 2 151 0 4 669 248 325 60 0 chr5 11028326 11028409 -141508850 - MLT1A0 LTR MaLR -191 174 87 4 669 1307 353 87 32 chr5 11028671 11029804 -141507455 - Lx8 LINE L1 -207 7266 6072 4 669 1627 201 30 20 chr5 11029804 11030210 -141507049 - RMER17C LTR ERVK 0 410 1 4 669 1307 353 87 32 chr5 11030210 11030221 -141507038 - Lx8 LINE L1 -1402 6071 6060 4 669 1306 249 149 43 chr5 11030363 11030495 -141506764 + RMER2 LTR ERV1 3 186 -381 4 669 198 0 0 0 chr5 11030495 11030517 -141506742 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 669 1306 249 149 43 chr5 11030517 11030895 -141506364 + RMER2 LTR ERV1 187 566 -1 4 669 217 151 19 19 chr5 11032146 11032200 -141505059 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 669 274 269 26 0 chr5 11032200 11032278 -141504981 + RMER2 LTR ERV1 488 567 0 5 669 35 41 0 0 chr5 11032305 11032354 -141504905 + AT_rich Low_complexity Low_complexity 1 49 0 5 669 398 71 0 0 chr5 11032355 11032411 -141504848 + PB1D9 SINE Alu 1 56 -64 5 669 663 230 60 7 chr5 11032701 11032850 -141504409 + ORR1D1 LTR MaLR 1 157 -217 5 669 369 0 0 0 chr5 11032862 11032903 -141504356 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 669 241 183 21 11 chr5 11032929 11033023 -141504236 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 5 669 767 280 34 5 chr5 11033026 11033234 -141504025 + ORR1D1 LTR MaLR 158 371 -3 5 669 1996 67 0 4 chr5 11034012 11034266 -141502993 - L1_Mus1 LINE L1 -229 6338 6086 5 669 1785 76 0 4 chr5 11034266 11034505 -141502754 + L1_Mus1 LINE L1 6329 6566 -1 5 669 511 369 4 39 chr5 11034545 11034776 -141502483 + MTE2b LTR MaLR 103 325 -54 5 669 1142 230 92 31 chr5 11034790 11035235 -141502024 - Lx9 LINE L1 0 7644 7173 5 669 24 53 0 0 chr5 11035384 11035422 -141501837 + AT_rich Low_complexity Low_complexity 1 38 0 6 669 261 277 0 12 chr5 11035517 11035601 -141501658 + L1M2 LINE L1 5417 5499 -792 6 669 244 308 23 23 chr5 11035839 11036015 -141501244 + L1M2 LINE L1 5572 5747 -442 6 669 308 64 21 0 chr5 11036120 11036167 -141501092 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 6 669 287 143 0 0 chr5 11036682 11036731 -141500528 + Lx2A1 LINE L1 4350 4398 -1479 6 669 1345 132 18 0 chr5 11036758 11036985 -141500274 - Lx2A1 LINE L1 -1248 4629 4399 6 669 7933 159 18 33 chr5 11036992 11039377 -141497882 + Lx2A1 LINE L1 4652 7008 0 6 669 799 243 128 146 chr5 11039400 11039844 -141497415 - RMER6B LTR ERVK -25 436 1 6 669 426 108 0 0 chr5 11042073 11042147 -141495112 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 669 280 272 68 0 chr5 11044977 11045080 -141492179 + B1_Mur4 SINE Alu 19 128 -22 6 669 362 240 100 8 chr5 11045490 11045620 -141491639 - B3 SINE B2 -2 214 73 6 669 3268 177 126 6 chr5 11046402 11047123 -141490136 - RMER17D2 LTR ERVK 0 809 2 6 669 501 58 0 0 chr5 11047836 11047905 -141489354 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 669 288 91 0 0 chr5 11048107 11048151 -141489108 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 669 303 28 0 0 chr5 11048151 11048187 -141489072 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 669 3041 199 52 38 chr5 11048464 11049358 -141487901 + L1_Mur2 LINE L1 3074 3979 -1898 7 669 31 26 0 0 chr5 11050818 11050856 -141486403 + AT_rich Low_complexity Low_complexity 1 38 0 7 669 545 177 9 0 chr5 11050895 11051008 -141486251 + L1_Mur2 LINE L1 4105 4218 -1659 7 669 1325 204 3 9 chr5 11051010 11051336 -141485923 - ORR1A4-int LTR MaLR -920 1043 720 7 669 730 196 14 194 chr5 11051225 11051503 -141485756 - MT2B LTR ERVL -339 262 35 7 669 3036 199 27 66 chr5 11051387 11052131 -141485128 - ORR1A4-int LTR MaLR -1234 729 15 7 669 790 244 116 148 chr5 11052141 11052478 -141484781 - ORR1A4 LTR MaLR -1 328 3 7 669 1848 171 3 0 chr5 11052484 11052806 -141484453 - ORR1A2 LTR MaLR 0 327 5 7 669 6333 151 42 8 chr5 11052810 11053947 -141483312 - ORR1A2-int LTR MaLR 0 1963 788 7 669 265 268 27 53 chr5 11053937 11054012 -141483247 - RMER6B LTR ERVK -80 381 309 7 669 25 90 0 0 chr5 11054085 11054152 -141483107 + AT_rich Low_complexity Low_complexity 1 67 0 7 669 1522 151 66 0 chr5 11054165 11054424 -141482835 - L1_Mus4 LINE L1 -6 6630 6355 7 669 485 241 158 18 chr5 11054472 11054637 -141482622 - RMER6B LTR ERVK -251 210 23 7 669 647 171 57 0 chr5 11054605 11054728 -141482531 - RMER6B LTR ERVK -331 130 1 7 669 22 0 0 0 chr5 11054900 11054922 -141482337 + AT_rich Low_complexity Low_complexity 1 22 0 8 669 1645 202 38 82 chr5 11054953 11055353 -141481906 + RLTR41 LTR ERV1 65 446 0 8 669 755 153 0 68 chr5 11055384 11055517 -141481742 - B2_Mm2 SINE B2 -70 125 2 8 669 376 204 45 0 chr5 11055634 11055722 -141481537 - RLTR19 LTR ERVK -1 498 404 8 669 27 29 0 0 chr5 11056351 11056385 -141480874 + AT_rich Low_complexity Low_complexity 1 34 0 8 669 7962 168 36 10 chr5 11058079 11059695 -141477564 + L1_Mur1 LINE L1 3368 5026 -860 8 669 5114 205 27 12 chr5 11059702 11060814 -141476445 + Lx3C LINE L1 5843 6971 -5 8 669 1234 303 84 2 chr5 11060842 11061331 -141475928 + Lx7 LINE L1 6702 7230 -466 8 669 203 81 81 0 chr5 11061438 11061475 -141475784 + T-rich Low_complexity Low_complexity 1 40 0 8 669 22 35 0 0 chr5 11061563 11061592 -141475667 + AT_rich Low_complexity Low_complexity 1 29 0 8 669 180 306 79 30 chr5 11061874 11061975 -141475284 - L4 LINE RTE -630 1399 1294 9 669 609 331 59 59 chr5 11062528 11062971 -141474288 + Lx8 LINE L1 6253 6695 -778 9 669 4393 143 23 14 chr5 11063030 11063760 -141473499 - RMER19A LTR ERVK 0 737 1 9 669 950 91 38 0 chr5 11063777 11063909 -141473350 + B1_Mus2 SINE Alu 1 137 -10 9 669 519 259 74 74 chr5 11063924 11064166 -141473093 + Lx8 LINE L1 6781 7022 -451 9 669 38433 7 0 1 chr5 11064159 11069934 -141467325 + L1Md_A LINE L1 1 5586 -297 9 669 8945 3 0 1 chr5 11069934 11070958 -141466301 + L1Md_A LINE L1 5587 6582 0 9 669 637 337 7 40 chr5 11070958 11071179 -141466080 + Lx8 LINE L1 7000 7215 -258 9 669 3914 82 0 0 chr5 11071179 11071682 -141465577 - RLTR1C LTR ERV1 0 503 1 9 669 637 337 7 40 chr5 11071682 11071738 -141465521 + Lx8 LINE L1 7216 7268 -205 9 669 828 282 28 20 chr5 11071792 11072045 -141465214 - Lx8 LINE L1 -849 6624 6370 9 669 314 333 67 29 chr5 11072219 11072324 -141464935 + PB1D7 SINE Alu 11 119 -1 9 669 240 339 68 38 chr5 11072913 11073045 -141464214 - ID_B1 SINE B4 -8 216 81 9 669 358 165 25 0 chr5 11073059 11073138 -141464121 + CT-rich Low_complexity Low_complexity 3 83 0 9 669 21 0 0 0 chr5 11073185 11073206 -141464053 + AT_rich Low_complexity Low_complexity 1 21 0 1 669 567 0 0 0 chr5 11073465 11073528 -141463731 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1 669 579 15 0 0 chr5 11073691 11073759 -141463500 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 669 195 69 0 0 chr5 11074177 11074206 -141463053 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 669 21 36 0 0 chr5 11075407 11075435 -141461824 + AT_rich Low_complexity Low_complexity 1 28 0 1 669 276 341 65 70 chr5 11076422 11076621 -141460638 - B3A SINE B2 0 198 1 1 669 1913 122 13 13 chr5 11076738 11077054 -141460205 + Lx3_Mus LINE L1 6694 7009 0 1 669 36 23 0 0 chr5 11077205 11077248 -141460011 + AT_rich Low_complexity Low_complexity 1 43 0 1 669 215 279 16 8 chr5 11077279 11077402 -141459857 + (TA)n Simple_repeat Simple_repeat 1 124 0 1 669 30 69 0 0 chr5 11077549 11077607 -141459652 + AT_rich Low_complexity Low_complexity 1 58 0 1 669 688 224 7 19 chr5 11078029 11078184 -141459075 - Lx7 LINE L1 -333 7363 7211 1 669 787 282 31 18 chr5 11078192 11078391 -141458868 + Lx7 LINE L1 6811 7012 -684 1 669 7065 54 56 0 chr5 11078391 11079300 -141457959 + L1Md_F2 LINE L1 5610 6569 -13 1 669 787 282 31 18 chr5 11079300 11079327 -141457932 + Lx7 LINE L1 7013 7039 -657 1 669 1113 65 0 0 chr5 11079328 11079467 -141457792 + B1_Mm SINE Alu 2 140 -7 1 669 243 0 0 0 chr5 11079467 11079494 -141457765 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 669 341 165 37 46 chr5 11079755 11079863 -141457396 - L1_Mur3 LINE L1 -4221 1659 1553 1 669 226 242 91 0 chr5 11079916 11079982 -141457277 + RMER5 LTR ERV1 463 534 0 1 669 1639 195 106 6 chr5 11080294 11080644 -141456615 + ORR1B1 LTR MaLR 2 386 -8 1 669 3594 30 2 0 chr5 11080706 11081140 -141456119 + L1_Mm LINE L1 3869 4303 -1580 1 669 300 167 29 57 chr5 11081416 11081486 -141455773 + MT2B LTR ERVL 197 264 -337 1 669 550 140 0 57 chr5 11081426 11081532 -141455727 + B1_Mus2 SINE Alu 48 147 0 1 669 231 204 0 0 chr5 11081532 11081586 -141455673 + A-rich Low_complexity Low_complexity 1 54 0 1 669 253 231 33 11 chr5 11082068 11082160 -141455099 + (TA)n Simple_repeat Simple_repeat 1 94 0 1 669 2327 215 22 15 chr5 11082238 11082873 -141454386 + Lx5 LINE L1 5278 5922 -1128 1 669 926 304 35 8 chr5 11082884 11083271 -141453988 + Lx5 LINE L1 5990 6416 -634 1 669 23 33 0 0 chr5 11085329 11085359 -141451900 + AT_rich Low_complexity Low_complexity 1 30 0 1 669 381 263 130 11 chr5 11085405 11085619 -141451640 + L1MA8 LINE L1 5786 6012 -177 1 669 4904 32 3 0 chr5 11087368 11087960 -141449299 - L1_Mm LINE L1 -968 4915 4322 1 669 3281 38 2 0 chr5 11087960 11088357 -141448902 + L1Md_T LINE L1 6184 6581 -1 1 669 216 0 0 0 chr5 11088384 11088408 -141448851 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 669 229 209 176 15 chr5 11088735 11088866 -141448393 - Lx9 LINE L1 -7 7637 7486 1 669 465 250 117 0 chr5 11088934 11089062 -141448197 + Lx9 LINE L1 7244 7386 -258 1 669 263 157 0 38 chr5 11089100 11089153 -141448106 + ORR1B2 LTR MaLR 312 362 -22 1 669 363 233 12 0 chr5 11089156 11089242 -141448017 + ORR1B2-int LTR MaLR 157 243 -1266 1 669 2452 174 116 2 chr5 11089256 11089740 -141447519 - Lx2 LINE L1 -1 6996 6458 1 669 4665 220 82 23 chr5 11089742 11090886 -141446373 + ORR1B2-int LTR MaLR 200 1425 -84 1 669 1124 76 0 0 chr5 11090886 11091030 -141446229 + B1_Mus2 SINE Alu 1 144 -3 1 669 315 0 0 0 chr5 11091030 11091065 -141446194 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 669 4665 220 82 23 chr5 11091065 11091156 -141446103 + ORR1B2-int LTR MaLR 1426 1508 -1 1 669 997 191 267 27 chr5 11091156 11091452 -141445807 + ORR1B2 LTR MaLR 1 367 0 1 669 528 45 0 0 chr5 11091465 11091532 -141445727 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 669 7913 58 2 0 chr5 11092409 11093454 -141443805 - L1Md_F2 LINE L1 0 6582 5536 1 669 13943 74 1 5 chr5 11093447 11094488 -141442771 + L1_Mm LINE L1 1892 2933 -2950 1 669 3398 20 2 10 chr5 11094488 11094887 -141442372 + MTA_Mm LTR MaLR 1 396 0 1 669 9287 26 2 2 chr5 11094887 11095985 -141441274 + MTA_Mm-int LTR MaLR 1 1098 0 1 669 3398 20 2 10 chr5 11095985 11096384 -141440875 + MTA_Mm LTR MaLR 1 396 0 1 669 13943 74 1 5 chr5 11096384 11097248 -141440011 + L1_Mm LINE L1 2934 3789 -2094 1 669 493 297 109 122 chr5 11098524 11098835 -141438424 - MTE2a LTR MaLR -15 364 58 1 669 343 231 0 0 chr5 11099153 11099218 -141438041 + RMER2 LTR ERV1 15 79 -488 1 669 367 285 99 123 chr5 11099216 11099548 -141437711 + RMER2 LTR ERV1 228 551 -16 1 669 21 57 0 0 chr5 11099890 11099925 -141437334 + AT_rich Low_complexity Low_complexity 1 35 0 1 669 22 0 0 0 chr5 11100394 11100416 -141436843 + AT_rich Low_complexity Low_complexity 1 22 0 1 669 2289 172 87 14 chr5 11100416 11100853 -141436406 - Lx4A LINE L1 0 7058 6590 1 669 389 322 62 122 chr5 11101123 11101526 -141435733 + MTE2a LTR MaLR 1 379 0 1 669 2036 106 13 3 chr5 11101767 11102070 -141435189 + L1_Mus3 LINE L1 6331 6636 -2 1 669 205 309 70 30 chr5 11102367 11102467 -141434792 - L2c LINE L2 -5 3382 3279 1 669 246 32 0 0 chr5 11103645 11103676 -141433583 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 1 669 911 218 45 74 chr5 11103692 11104069 -141433190 + RLTR9A LTR ERVK 1 366 -2 1 669 14099 13 0 0 chr5 11104323 11105938 -141431321 + L1Md_A LINE L1 3972 5586 -297 1 669 8617 24 0 0 chr5 11105938 11106933 -141430326 + L1Md_A LINE L1 5587 6581 -1 1 669 2663 203 13 9 chr5 11107005 11107533 -141429726 - Lx2A1 LINE L1 -6 7002 6473 1 669 378 0 0 0 chr5 11108107 11108149 -141429110 + (T)n Simple_repeat Simple_repeat 1 42 0 1 669 210 364 65 43 chr5 11108248 11108277 -141428982 + ID_B1 SINE B4 84 224 0 1 669 270 352 92 9 chr5 11108277 11108386 -141428873 + B1F2 SINE Alu 32 149 0 1 669 225 0 0 0 chr5 11108574 11108599 -141428660 + (A)n Simple_repeat Simple_repeat 1 25 0 1 669 257 368 83 12 chr5 11109449 11109617 -141427642 - FordPrefect DNA Tip100 -174 1509 1330 1 669 296 361 82 18 chr5 11109631 11109851 -141427408 - FordPrefect DNA Tip100 -393 1290 1057 1 669 21 0 0 0 chr5 11110149 11110170 -141427089 + AT_rich Low_complexity Low_complexity 1 21 0 1 669 209 209 0 0 chr5 11110368 11110411 -141426848 + T-rich Low_complexity Low_complexity 3 45 0 1 669 649 332 14 24 chr5 11111632 11111845 -141425414 + B3 SINE B2 6 216 0 1 669 34 72 0 0 chr5 11111889 11111958 -141425301 + AT_rich Low_complexity Low_complexity 1 69 0 1 669 1608 36 0 20 chr5 11112111 11112308 -141424951 + B2_Mm1t SINE B2 1 193 0 1 669 494 305 93 21 chr5 11112339 11112630 -141424629 - Lx8 LINE L1 -453 7020 6701 1 669 427 322 14 7 chr5 11112692 11112836 -141424423 + RSINE1 SINE B4 4 148 -17 1 669 319 293 154 31 chr5 11112916 11113078 -141424181 + B3A SINE B2 1 182 -16 1 669 732 214 0 0 chr5 11113097 11113275 -141423984 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 669 30 27 0 0 chr5 11113276 11113313 -141423946 + AT_rich Low_complexity Low_complexity 1 37 0 1 669 27 87 0 0 chr5 11114565 11114634 -141422625 + AT_rich Low_complexity Low_complexity 1 69 0 1 669 23 78 0 0 chr5 11114659 11114710 -141422549 + AT_rich Low_complexity Low_complexity 1 51 0 1 669 405 0 0 0 chr5 11114908 11114953 -141422306 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 669 282 318 0 53 chr5 11115268 11115457 -141421802 + GA-rich Low_complexity Low_complexity 2 180 0 1 669 339 309 18 24 chr5 11115522 11115688 -141421571 + GA-rich Low_complexity Low_complexity 1 165 0 1 669 519 167 42 0 chr5 11115688 11115832 -141421427 + (CAGAGA)n Simple_repeat Simple_repeat 2 151 0 1 669 248 325 60 0 chr5 11115832 11115915 -141421344 - MLT1A0 LTR MaLR -191 174 87 1 669 1297 352 87 32 chr5 11116185 11117310 -141419949 - Lx8 LINE L1 -215 7258 6072 1 669 1608 208 27 17 chr5 11117310 11117716 -141419543 - RMER17C LTR ERVK 0 410 1 1 669 1297 352 87 32 chr5 11117716 11117727 -141419532 - Lx8 LINE L1 -1402 6071 6060 1 669 1332 245 149 43 chr5 11117869 11118001 -141419258 + RMER2 LTR ERV1 3 186 -381 1 669 270 0 0 0 chr5 11118001 11118031 -141419228 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 669 1332 245 149 43 chr5 11118031 11118409 -141418850 + RMER2 LTR ERV1 187 566 -1 1 669 217 151 19 19 chr5 11119660 11119714 -141417545 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 669 274 269 26 0 chr5 11119714 11119792 -141417467 + RMER2 LTR ERV1 488 567 0 1 669 35 41 0 0 chr5 11119819 11119868 -141417391 + AT_rich Low_complexity Low_complexity 1 49 0 1 669 398 71 0 0 chr5 11119869 11119925 -141417334 + PB1D9 SINE Alu 1 56 -64 1 669 663 230 60 7 chr5 11120215 11120364 -141416895 + ORR1D1 LTR MaLR 1 157 -217 1 669 387 0 0 0 chr5 11120376 11120419 -141416840 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 669 241 183 21 11 chr5 11120445 11120539 -141416720 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 1 669 767 280 34 5 chr5 11120542 11120750 -141416509 + ORR1D1 LTR MaLR 158 371 -3 1 669 2005 63 0 4 chr5 11121529 11121783 -141415476 - L1_Mus1 LINE L1 -229 6338 6086 1 669 1798 71 0 4 chr5 11121783 11122022 -141415237 + L1_Mus1 LINE L1 6329 6566 -1 1 669 543 360 25 40 chr5 11122062 11122337 -141414922 + MTEa LTR MaLR 103 373 -6 1 669 1137 226 99 27 chr5 11122338 11122752 -141414507 - Lx9 LINE L1 -28 7616 7173 1 669 24 53 0 0 chr5 11122901 11122939 -141414320 + AT_rich Low_complexity Low_complexity 1 38 0 1 669 248 289 0 12 chr5 11123034 11123118 -141414141 + L1M2 LINE L1 5417 5499 -792 1 669 244 308 23 23 chr5 11123356 11123532 -141413727 + L1M2 LINE L1 5572 5747 -442 1 669 308 64 21 0 chr5 11123637 11123684 -141413575 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 1 669 287 143 0 0 chr5 11124198 11124247 -141413012 + Lx2A1 LINE L1 4350 4398 -1479 1 669 1345 132 18 0 chr5 11124274 11124501 -141412758 - Lx2A1 LINE L1 -1248 4629 4399 1 669 7958 162 17 30 chr5 11124508 11126879 -141410380 + Lx2A1 LINE L1 4652 7000 -8 1 669 749 245 128 150 chr5 11126917 11127363 -141409896 - RMER6B LTR ERVK -25 436 1 1 669 388 169 0 0 chr5 11129577 11129636 -141407623 - HAL1-3A_ME LINE L1 -824 2034 1976 1 669 208 329 0 0 chr5 11129636 11129709 -141407550 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 669 272 282 68 0 chr5 11132516 11132619 -141404640 + B1_Mur4 SINE Alu 19 128 -22 1 669 353 248 100 8 chr5 11133025 11133155 -141404104 - B3 SINE B2 -2 214 73 1 669 3556 175 60 13 chr5 11133931 11134703 -141402556 - RMER17D2 LTR ERVK 0 809 2 1 669 231 103 0 0 chr5 11135417 11135456 -141401803 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 669 369 169 100 38 chr5 11135574 11135734 -141401525 + RMER17D LTR ERVK 237 406 -483 1 669 327 65 0 0 chr5 11135734 11135780 -141401479 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 669 2995 204 52 45 chr5 11136057 11136956 -141400303 + Lx5 LINE L1 3074 3979 -1898 2 669 30 27 0 0 chr5 11138464 11138501 -141398758 + AT_rich Low_complexity Low_complexity 1 37 0 2 669 544 177 9 0 chr5 11138540 11138653 -141398606 + Lx5 LINE L1 4105 4218 -1659 2 669 1321 206 3 9 chr5 11138655 11138983 -141398276 - ORR1A4-int LTR MaLR -920 1043 718 2 669 699 210 14 197 chr5 11138870 11139149 -141398110 - MT2B LTR ERVL -339 262 35 2 669 3024 196 30 66 chr5 11139033 11139775 -141397484 - ORR1A4-int LTR MaLR -1234 729 15 2 669 873 246 133 75 chr5 11139785 11140093 -141397166 - ORR1A4 LTR MaLR -1 328 3 2 669 665 173 34 6 chr5 11140099 11140262 -141396997 - ORR1A2 LTR MaLR 0 367 195 2 669 480 271 13 40 chr5 11140264 11140401 -141396858 + Lx7 LINE L1 6907 7040 -656 2 669 1050 84 0 7 chr5 11140401 11140539 -141396720 + B1_Mm SINE Alu 2 139 -8 2 669 189 74 0 0 chr5 11140539 11140566 -141396693 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 669 480 271 13 40 chr5 11140566 11140582 -141396677 + Lx7 LINE L1 7041 7052 -644 2 669 367 153 0 89 chr5 11140591 11140670 -141396589 + MT2B LTR ERVL 197 268 -333 2 669 647 150 0 0 chr5 11140601 11140701 -141396558 + B1_Mus2 SINE Alu 48 147 0 2 669 205 200 0 0 chr5 11140703 11140743 -141396516 + A-rich Low_complexity Low_complexity 1 40 0 2 670 215 211 26 13 chr5 11141242 11141319 -141395940 + (TA)n Simple_repeat Simple_repeat 1 78 0 2 670 2344 202 30 25 chr5 11141397 11142032 -141395227 + Lx5 LINE L1 5278 5922 -1128 2 670 955 300 59 8 chr5 11142043 11142427 -141394832 + Lx5 LINE L1 5990 6417 -633 2 670 23 33 0 0 chr5 11144487 11144517 -141392742 + AT_rich Low_complexity Low_complexity 1 30 0 2 670 343 271 133 9 chr5 11144579 11144777 -141392482 + L1MA8 LINE L1 5802 6012 -177 2 670 4896 37 2 0 chr5 11146525 11147117 -141390142 - L1_Mm LINE L1 -968 4915 4323 2 670 3260 40 2 0 chr5 11147118 11147514 -141389745 + L1Md_T LINE L1 6184 6580 -2 2 670 26 0 0 0 chr5 11147538 11147564 -141389695 + AT_rich Low_complexity Low_complexity 1 26 0 2 670 266 244 270 15 chr5 11147890 11148090 -141389169 - Lx9 LINE L1 -7 7637 7387 2 670 481 242 117 0 chr5 11148089 11148217 -141389042 + Lx9 LINE L1 7244 7386 -258 2 670 416 100 0 0 chr5 11148270 11148330 -141388929 + ORR1B2 LTR MaLR 335 394 0 2 670 758 211 191 0 chr5 11148330 11148534 -141388725 + ORR1B2-int LTR MaLR 1 243 -1266 2 670 2762 163 114 2 chr5 11148548 11149065 -141388194 - Lx2 LINE L1 -1 6996 6422 2 670 4570 220 66 33 chr5 11149128 11150223 -141387036 + ORR1B2-int LTR MaLR 270 1403 -106 2 670 1104 88 0 0 chr5 11150223 11150370 -141386889 + B1_Mus2 SINE Alu 1 147 0 2 670 4570 220 66 33 chr5 11150370 11150383 -141386876 + ORR1B2-int LTR MaLR 1404 1417 -92 2 670 288 0 0 0 chr5 11150383 11150415 -141386844 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2 670 4570 220 66 33 chr5 11150415 11150506 -141386753 + ORR1B2-int LTR MaLR 1418 1508 -1 2 670 1067 190 264 24 chr5 11150506 11150802 -141386457 + ORR1B2 LTR MaLR 1 367 0 2 670 474 49 0 0 chr5 11150813 11150874 -141386385 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 670 382 292 100 170 chr5 11153006 11153336 -141383923 - MTE2a LTR MaLR -15 364 58 2 670 343 231 0 0 chr5 11153655 11153720 -141383539 + RMER2 LTR ERV1 15 79 -488 2 670 613 261 153 86 chr5 11153709 11154048 -141383211 + RMER2 LTR ERV1 190 551 -16 2 670 22 80 0 0 chr5 11154390 11154440 -141382819 + AT_rich Low_complexity Low_complexity 1 50 0 2 670 21 0 0 0 chr5 11154890 11154911 -141382348 + AT_rich Low_complexity Low_complexity 1 21 0 2 670 2378 160 87 14 chr5 11154911 11155348 -141381911 - Lx4A LINE L1 0 7058 6590 2 670 367 326 48 83 chr5 11155616 11155966 -141381293 + MTC LTR MaLR 1 323 -56 2 670 2134 99 10 3 chr5 11156266 11156570 -141380689 + L1_Mus3 LINE L1 6331 6636 -2 2 670 229 299 70 30 chr5 11156874 11156974 -141380285 - L2c LINE L2 -5 3382 3279 2 670 747 33 0 0 chr5 11158147 11158237 -141379022 + (TTTTG)n Simple_repeat Simple_repeat 4 93 0 2 670 918 225 45 74 chr5 11158253 11158632 -141378627 + RLTR9A LTR ERVK 1 368 0 2 670 2494 209 11 17 chr5 11158872 11159406 -141377853 - Lx2A1 LINE L1 -5 7003 6473 2 670 251 401 72 7 chr5 11160076 11160214 -141377045 + B1F2 SINE Alu 3 149 0 2 670 23733 35 3 0 chr5 11161419 11164320 -141372939 + L1Md_A LINE L1 2678 5586 -297 2 670 8431 34 0 0 chr5 11164320 11165316 -141371943 + L1Md_A LINE L1 5587 6582 0 2 670 336 355 77 18 chr5 11165370 11165591 -141371668 - FordPrefect DNA Tip100 -393 1290 1057 2 670 543 321 14 23 chr5 11166230 11166444 -141370815 + B3 SINE B2 5 216 0 2 670 30 45 0 0 chr5 11166488 11166532 -141370727 + AT_rich Low_complexity Low_complexity 1 44 0 2 670 449 328 113 14 chr5 11166727 11167018 -141370241 - Lx8 LINE L1 -453 7020 6701 2 670 475 308 14 7 chr5 11167080 11167224 -141370035 + RSINE1 SINE B4 4 148 -17 2 670 343 296 142 19 chr5 11167304 11167466 -141369793 + B3A SINE B2 1 182 -16 2 670 474 211 0 0 chr5 11167482 11167591 -141369668 + (CA)n Simple_repeat Simple_repeat 1 109 0 2 670 30 27 0 0 chr5 11167592 11167629 -141369630 + AT_rich Low_complexity Low_complexity 1 37 0 2 670 23 78 0 0 chr5 11168972 11169023 -141368236 + AT_rich Low_complexity Low_complexity 1 51 0 2 670 432 0 0 0 chr5 11169221 11169269 -141367990 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 670 266 324 0 53 chr5 11169580 11169769 -141367490 + GA-rich Low_complexity Low_complexity 2 180 0 2 670 328 316 9 46 chr5 11169836 11170056 -141367203 + GA-rich Low_complexity Low_complexity 1 211 0 2 670 804 170 0 0 chr5 11170069 11170422 -141366837 + (CAGAGA)n Simple_repeat Simple_repeat 1 353 0 2 670 225 329 73 0 chr5 11170435 11170517 -141366742 - MLT1A0 LTR MaLR -191 174 87 2 670 789 346 63 26 chr5 11170787 11171399 -141365860 - Lx7 LINE L1 -215 7258 6614 2 670 513 365 54 21 chr5 11171402 11171774 -141365485 - Lx7 LINE L1 -1220 6476 6093 2 670 1659 191 30 20 chr5 11171784 11172190 -141365069 - RMER17C LTR ERVK 0 410 1 2 670 1406 247 155 47 chr5 11172343 11172465 -141364794 + RMER2 LTR ERV1 3 164 -403 2 670 333 0 0 0 chr5 11172465 11172502 -141364757 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 670 1406 247 155 47 chr5 11172502 11172889 -141364370 + RMER2 LTR ERV1 165 566 -1 2 670 304 125 15 15 chr5 11174146 11174211 -141363048 + (TA)n Simple_repeat Simple_repeat 2 66 0 2 670 275 269 26 0 chr5 11174211 11174289 -141362970 + RMER2 LTR ERV1 488 567 0 2 670 38 39 0 0 chr5 11174316 11174368 -141362891 + AT_rich Low_complexity Low_complexity 1 52 0 2 670 1068 88 0 20 chr5 11174369 11174519 -141362740 + B1_Mm SINE Alu 1 147 0 2 670 414 57 0 0 chr5 11174519 11174572 -141362687 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 670 423 165 0 0 chr5 11174574 11174659 -141362600 + GA-rich Low_complexity Low_complexity 2 86 0 2 670 661 236 61 0 chr5 11175574 11175722 -141361537 + ORR1D1 LTR MaLR 1 157 -217 2 670 564 15 0 0 chr5 11175734 11175799 -141361460 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 670 258 175 41 10 chr5 11175825 11175923 -141361336 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 2 670 790 271 34 10 chr5 11175926 11176135 -141361124 + ORR1D1 LTR MaLR 158 371 -3 2 670 1922 75 0 8 chr5 11176915 11177170 -141360089 - L1_Mus1 LINE L1 -229 6338 6086 2 670 1816 71 0 4 chr5 11177170 11177409 -141359850 + L1_Mus1 LINE L1 6329 6566 -1 2 670 270 0 0 0 chr5 11177435 11177465 -141359794 + (A)n Simple_repeat Simple_repeat 1 30 0 2 670 522 365 4 39 chr5 11177465 11177696 -141359563 + MTE2b LTR MaLR 103 325 -54 2 670 1078 238 95 30 chr5 11177722 11178155 -141359104 - Lx9 LINE L1 -11 7633 7173 2 670 23 54 0 0 chr5 11178304 11178341 -141358918 + AT_rich Low_complexity Low_complexity 1 37 0 2 670 261 277 0 12 chr5 11178436 11178520 -141358739 + L1M2 LINE L1 5417 5499 -792 2 670 235 314 23 23 chr5 11178758 11178934 -141358325 + L1M2 LINE L1 5572 5747 -442 2 670 308 64 21 0 chr5 11179039 11179086 -141358173 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 2 670 260 163 0 0 chr5 11179601 11179650 -141357609 + Lx2A1 LINE L1 4350 4398 -1479 2 670 1351 146 13 0 chr5 11179667 11179906 -141357353 - Lx2A1 LINE L1 -1237 4640 4399 2 670 8021 163 18 30 chr5 11179913 11182283 -141354976 + Lx2A1 LINE L1 4652 7000 -8 2 670 718 248 127 158 chr5 11182322 11182772 -141354487 - RMER6B LTR ERVK -25 436 1 2 670 323 190 0 65 chr5 11184916 11184978 -141352281 - HAL1-3A_ME LINE L1 -824 2034 1977 2 670 280 272 68 0 chr5 11187839 11187942 -141349317 + B1_Mur4 SINE Alu 19 128 -22 2 670 362 240 100 8 chr5 11188352 11188482 -141348777 - B3 SINE B2 -2 214 73 2 670 3473 187 70 4 chr5 11189264 11190022 -141347237 - RMER17D2 LTR ERVK 0 809 2 2 670 249 98 0 0 chr5 11190736 11190777 -141346482 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 670 220 176 39 0 chr5 11190937 11190988 -141346271 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 2 670 540 45 0 0 chr5 11190989 11191056 -141346203 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 670 393 22 0 0 chr5 11191056 11191101 -141346158 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 670 2964 205 55 43 chr5 11191273 11192161 -141345098 + L1_Mur2 LINE L1 3081 3979 -1898 2 670 31 0 0 0 chr5 11193667 11193698 -141343561 + AT_rich Low_complexity Low_complexity 1 31 0 2 670 519 153 10 0 chr5 11193747 11193845 -141343414 + L1_Mur2 LINE L1 4105 4203 -1674 2 670 4073 202 24 85 chr5 11193845 11194972 -141342287 - ORR1A4-int LTR MaLR -920 1043 15 2 670 944 231 133 74 chr5 11194985 11195294 -141341965 - ORR1A4 LTR MaLR 0 329 3 2 670 1846 171 3 0 chr5 11195300 11195622 -141341637 - ORR1A2 LTR MaLR 0 327 5 2 670 6318 156 42 3 chr5 11195626 11196759 -141340500 - ORR1A2-int LTR MaLR 0 1963 788 2 670 30 77 0 0 chr5 11196897 11196962 -141340297 + AT_rich Low_complexity Low_complexity 1 65 0 2 670 1861 123 0 0 chr5 11196975 11197251 -141340008 - L1_Mus4 LINE L1 -6 6630 6355 2 670 664 205 108 12 chr5 11197298 11197555 -141339704 - RMER6B LTR ERVK -251 210 1 2 670 22 0 0 0 chr5 11197727 11197749 -141339510 + AT_rich Low_complexity Low_complexity 1 22 0 2 670 1599 201 21 88 chr5 11197790 11198178 -141339081 + RLTR41 LTR ERV1 85 446 0 2 670 717 177 0 68 chr5 11198209 11198342 -141338917 - B2_Mm2 SINE B2 -70 125 2 2 670 413 202 34 0 chr5 11198459 11198548 -141338711 - RLTR19 LTR ERVK -1 498 404 2 670 7918 167 39 9 chr5 11200894 11202506 -141334753 + L1_Mur1 LINE L1 3368 5026 -860 2 670 5112 198 32 12 chr5 11202513 11203620 -141333639 + Lx3C LINE L1 5843 6971 -5 2 670 1230 301 89 20 chr5 11203648 11204143 -141333116 + Lx7 LINE L1 6702 7230 -466 2 670 203 81 81 0 chr5 11204250 11204287 -141332972 + T-rich Low_complexity Low_complexity 1 40 0 2 670 22 35 0 0 chr5 11204375 11204404 -141332855 + AT_rich Low_complexity Low_complexity 1 29 0 2 670 191 296 79 30 chr5 11204686 11204787 -141332472 - L4 LINE RTE -630 1399 1294 2 670 667 332 54 54 chr5 11205340 11205783 -141331476 + Lx8 LINE L1 6253 6695 -778 2 670 4467 139 26 14 chr5 11205842 11206570 -141330689 - RMER19A LTR ERVK 0 737 1 2 670 971 84 38 0 chr5 11206588 11206719 -141330540 + B1_Mus2 SINE Alu 2 137 -10 2 670 1005 308 40 60 chr5 11206734 11207175 -141330084 + Lx8 LINE L1 6781 7215 -258 2 670 4098 62 2 0 chr5 11207175 11207677 -141329582 - RLTR1C LTR ERV1 0 503 1 3 670 1005 308 40 60 chr5 11207677 11207733 -141329526 + Lx8 LINE L1 7216 7268 -205 2 670 899 261 54 8 chr5 11207787 11208027 -141329232 - Lx8 LINE L1 -849 6624 6374 3 670 246 363 67 19 chr5 11208194 11208298 -141328961 + PB1D7 SINE Alu 11 119 -1 3 670 241 339 68 38 chr5 11208887 11209019 -141328240 - ID_B1 SINE B4 -8 216 81 3 670 358 165 25 0 chr5 11209033 11209112 -141328147 + CT-rich Low_complexity Low_complexity 3 83 0 3 670 21 0 0 0 chr5 11209158 11209179 -141328080 + AT_rich Low_complexity Low_complexity 1 21 0 3 670 642 13 0 0 chr5 11209438 11209513 -141327746 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 3 670 831 46 0 0 chr5 11209676 11209784 -141327475 + (CA)n Simple_repeat Simple_repeat 2 109 0 3 670 21 36 0 0 chr5 11211425 11211453 -141325806 + AT_rich Low_complexity Low_complexity 1 28 0 3 670 252 346 65 70 chr5 11212440 11212639 -141324620 - B3A SINE B2 0 198 1 3 670 1893 119 16 16 chr5 11212756 11213072 -141324187 + Lx3_Mus LINE L1 6694 7009 0 3 670 36 23 0 0 chr5 11213223 11213266 -141323993 + AT_rich Low_complexity Low_complexity 1 43 0 3 670 215 279 16 8 chr5 11213297 11213420 -141323839 + (TA)n Simple_repeat Simple_repeat 1 124 0 3 670 30 69 0 0 chr5 11213567 11213625 -141323634 + AT_rich Low_complexity Low_complexity 1 58 0 3 670 688 224 7 19 chr5 11214048 11214203 -141323056 - Lx7 LINE L1 -333 7363 7211 3 670 820 266 35 18 chr5 11214211 11214410 -141322849 + Lx7 LINE L1 6811 7012 -684 3 670 6929 58 57 0 chr5 11214410 11215317 -141321942 + L1Md_F2 LINE L1 5610 6568 -14 3 670 820 266 35 18 chr5 11215317 11215343 -141321916 + Lx7 LINE L1 7013 7039 -657 3 670 1081 79 0 0 chr5 11215344 11215483 -141321776 + B1_Mm SINE Alu 2 140 -7 3 670 246 32 0 0 chr5 11215483 11215514 -141321745 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 670 353 202 40 10 chr5 11215783 11215883 -141321376 - L1_Mur3 LINE L1 -4225 1655 1553 3 670 295 254 14 0 chr5 11215936 11216007 -141321252 + RMER5 LTR ERV1 463 534 0 3 670 1653 195 105 6 chr5 11216318 11216669 -141320590 + ORR1B1 LTR MaLR 1 386 -8 3 670 3579 32 2 0 chr5 11216731 11217165 -141320094 + L1_Mm LINE L1 3869 4303 -1580 3 670 300 167 29 57 chr5 11217442 11217512 -141319747 + MT2B LTR ERVL 197 264 -337 3 670 603 140 0 39 chr5 11217452 11217556 -141319703 + B1_Mus2 SINE Alu 48 147 0 3 670 5625 20 1 0 chr5 11217557 11218210 -141319049 + L1Md_T LINE L1 4933 5586 -297 3 670 8441 32 0 0 chr5 11218210 11219206 -141318053 + L1Md_T LINE L1 5587 6582 0 3 670 217 102 0 58 chr5 11219213 11219265 -141317994 + A-rich Low_complexity Low_complexity 2 50 0 3 670 269 220 33 11 chr5 11219749 11219841 -141317418 + (TA)n Simple_repeat Simple_repeat 1 94 0 3 670 2297 212 25 17 chr5 11219919 11220554 -141316705 + Lx5 LINE L1 5278 5922 -1128 3 670 903 307 34 8 chr5 11220565 11220953 -141316306 + Lx5 LINE L1 5990 6417 -633 3 670 377 279 111 7 chr5 11223073 11223291 -141313968 + L1MA5A LINE L1 5760 6000 -303 3 670 273 242 264 15 chr5 11225393 11225594 -141311665 - Lx9 LINE L1 -7 7637 7387 3 670 422 260 126 0 chr5 11225593 11225720 -141311539 + Lx9 LINE L1 7244 7386 -258 3 670 379 161 0 5 chr5 11225758 11225833 -141311426 + ORR1B2 LTR MaLR 312 394 0 3 670 774 211 191 0 chr5 11225833 11226037 -141311222 + ORR1B2-int LTR MaLR 1 243 -1266 3 670 2705 157 118 2 chr5 11226051 11226549 -141310710 - Lx2 LINE L1 -1 6996 6441 3 670 4683 217 73 35 chr5 11226549 11227693 -141309566 + ORR1B2-int LTR MaLR 226 1425 -84 3 670 1101 83 0 0 chr5 11227693 11227837 -141309422 + B1_Mus2 SINE Alu 1 144 -3 3 670 473 45 0 29 chr5 11227837 11227906 -141309353 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 3 670 4683 217 73 35 chr5 11227906 11227997 -141309262 + ORR1B2-int LTR MaLR 1426 1508 -1 3 670 1045 188 267 27 chr5 11227997 11228293 -141308966 + ORR1B2 LTR MaLR 1 367 0 3 670 798 31 0 0 chr5 11228304 11228401 -141308858 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 670 360 296 98 182 chr5 11229939 11230274 -141306985 - MTE2a LTR MaLR -15 364 58 3 670 497 277 60 99 chr5 11230593 11231005 -141306254 + RMER2 LTR ERV1 15 551 -16 3 670 21 82 0 0 chr5 11231346 11231395 -141305864 + AT_rich Low_complexity Low_complexity 1 49 0 3 670 2403 155 87 14 chr5 11231869 11232306 -141304953 - Lx4A LINE L1 0 7058 6590 3 670 350 340 47 82 chr5 11232575 11232925 -141304334 + MTC LTR MaLR 1 323 -56 3 670 2101 102 10 3 chr5 11233225 11233529 -141303730 + L1_Mus3 LINE L1 6331 6636 -2 3 670 220 296 68 27 chr5 11233859 11233932 -141303327 - L2c LINE L2 -33 3354 3279 3 670 190 0 67 0 chr5 11235105 11235135 -141302124 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 3 670 1079 206 52 73 chr5 11235151 11235514 -141301745 + RLTR9A LTR ERVK 1 436 -1 3 670 2602 208 13 9 chr5 11235755 11236284 -141300975 - Lx2A1 LINE L1 -5 7003 6473 3 670 210 37 0 0 chr5 11236861 11236888 -141300371 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 3 670 225 356 65 43 chr5 11236984 11237013 -141300246 + ID_B1 SINE B4 84 224 0 3 670 287 343 92 9 chr5 11237013 11237122 -141300137 + B1F2 SINE Alu 32 149 0 3 670 198 0 0 0 chr5 11237310 11237332 -141299927 + (A)n Simple_repeat Simple_repeat 1 22 0 3 670 272 345 89 18 chr5 11238184 11238352 -141298907 - FordPrefect DNA Tip100 -174 1509 1330 3 670 369 350 77 18 chr5 11238366 11238587 -141298672 - FordPrefect DNA Tip100 -393 1290 1057 3 670 545 321 14 23 chr5 11239226 11239440 -141297819 + B3 SINE B2 5 216 0 3 670 23 68 0 0 chr5 11239484 11239528 -141297731 + AT_rich Low_complexity Low_complexity 1 44 0 3 670 490 308 0 26 chr5 11239723 11239916 -141297343 - Lx8 LINE L1 -453 7020 6825 3 670 392 329 14 7 chr5 11240076 11240220 -141297039 + RSINE1 SINE B4 4 148 -17 3 670 309 308 142 19 chr5 11240300 11240462 -141296797 + B3A SINE B2 1 182 -16 3 670 522 231 0 0 chr5 11240464 11240607 -141296652 + (CA)n Simple_repeat Simple_repeat 1 143 0 3 670 23 54 0 0 chr5 11240608 11240645 -141296614 + AT_rich Low_complexity Low_complexity 1 37 0 3 670 34 72 0 0 chr5 11241889 11241958 -141295301 + AT_rich Low_complexity Low_complexity 1 69 0 3 670 22 0 0 0 chr5 11242011 11242033 -141295226 + AT_rich Low_complexity Low_complexity 1 22 0 3 670 243 0 0 0 chr5 11242231 11242258 -141295001 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 670 307 313 0 53 chr5 11242572 11242761 -141294498 + GA-rich Low_complexity Low_complexity 2 180 0 3 670 324 285 18 54 chr5 11242826 11242993 -141294266 + GA-rich Low_complexity Low_complexity 1 161 0 3 670 408 172 49 0 chr5 11242993 11243115 -141294144 + (CAGAGA)n Simple_repeat Simple_repeat 2 129 0 3 670 232 322 20 61 chr5 11243115 11243214 -141294045 - MLT1A0 LTR MaLR -184 181 87 3 670 1264 359 80 27 chr5 11243484 11244583 -141292676 - Lx8 LINE L1 -215 7258 6102 3 670 1691 181 32 20 chr5 11244605 11245010 -141292249 - RMER17C LTR ERVK 0 410 1 3 670 1605 235 112 46 chr5 11245163 11245663 -141291596 + RMER2 LTR ERV1 3 535 -32 3 670 189 0 0 0 chr5 11246344 11246365 -141290894 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 670 624 189 13 7 chr5 11246948 11247102 -141290157 + (TA)n Simple_repeat Simple_repeat 2 156 0 3 670 44 20 0 0 chr5 11247205 11247256 -141290003 + AT_rich Low_complexity Low_complexity 1 51 0 3 670 1070 102 0 0 chr5 11247257 11247404 -141289855 + B1_Mm SINE Alu 1 147 0 3 670 261 0 0 0 chr5 11247417 11247446 -141289813 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 670 732 141 0 0 chr5 11247448 11247583 -141289676 + (GA)n Simple_repeat Simple_repeat 2 136 0 3 670 694 232 58 6 chr5 11248500 11248656 -141288603 + ORR1D1 LTR MaLR 1 164 -210 3 670 513 0 0 0 chr5 11248663 11248720 -141288539 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 670 232 194 21 11 chr5 11248746 11248840 -141288419 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 3 670 791 271 34 5 chr5 11248843 11249051 -141288208 + ORR1D1 LTR MaLR 158 371 -3 3 670 2029 59 0 4 chr5 11249826 11250080 -141287179 - L1_Mus1 LINE L1 -229 6338 6086 3 670 1691 76 0 0 chr5 11250086 11250309 -141286950 + L1_Mus1 LINE L1 6344 6566 -1 3 670 507 365 4 39 chr5 11250350 11250581 -141286678 + MTE2b LTR MaLR 103 325 -54 3 670 1202 225 92 31 chr5 11250595 11251040 -141286219 - Lx9 LINE L1 0 7644 7173 3 670 24 53 0 0 chr5 11251189 11251227 -141286032 + AT_rich Low_complexity Low_complexity 1 38 0 3 670 261 277 0 12 chr5 11251322 11251406 -141285853 + L1M2 LINE L1 5417 5499 -792 3 670 252 302 23 23 chr5 11251644 11251820 -141285439 + L1M2 LINE L1 5572 5747 -442 3 670 380 55 18 0 chr5 11251925 11251980 -141285279 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 3 670 260 163 0 0 chr5 11252493 11252542 -141284717 + Lx2A1 LINE L1 4350 4398 -1479 3 670 1386 146 8 0 chr5 11252558 11252798 -141284461 - Lx2A1 LINE L1 -1237 4640 4399 3 670 7833 166 17 30 chr5 11252796 11255177 -141282082 + Lx2A1 LINE L1 4649 7000 -8 3 670 713 253 127 158 chr5 11255212 11255662 -141281597 - RMER6B LTR ERVK -25 436 1 3 670 552 120 0 0 chr5 11257888 11257988 -141279271 + (TG)n Simple_repeat Simple_repeat 1 100 0 3 670 283 272 68 0 chr5 11260818 11260921 -141276338 + B1_Mur4 SINE Alu 19 128 -22 3 670 353 248 100 8 chr5 11261327 11261457 -141275802 - B3 SINE B2 -2 214 73 3 670 3534 177 58 14 chr5 11262233 11263007 -141274252 - RMER17D2 LTR ERVK 0 809 2 3 670 249 98 0 0 chr5 11263721 11263762 -141273497 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 670 480 116 0 0 chr5 11263946 11264032 -141273227 + (TC)n Simple_repeat Simple_repeat 1 86 0 3 670 483 18 0 0 chr5 11264032 11264088 -141273171 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 670 3019 205 52 40 chr5 11264365 11265260 -141271999 + L1_Mur2 LINE L1 3074 3979 -1898 3 670 45 0 0 0 chr5 11266763 11266808 -141270451 + AT_rich Low_complexity Low_complexity 1 45 0 3 670 491 212 9 0 chr5 11266847 11266960 -141270299 + L1_Mur2 LINE L1 4105 4218 -1659 3 670 1326 203 3 9 chr5 11266962 11267290 -141269969 - ORR1A4-int LTR MaLR -920 1043 718 3 670 690 210 14 197 chr5 11267177 11267456 -141269803 - MT2B LTR ERVL -339 262 35 3 670 2842 203 30 83 chr5 11267342 11268105 -141269154 - ORR1A4-int LTR MaLR -1236 727 5 3 670 932 231 133 74 chr5 11268109 11268418 -141268841 - ORR1A4 LTR MaLR 0 329 3 3 670 1417 185 25 8 chr5 11268424 11268744 -141268515 - ORR1A2 LTR MaLR 0 346 17 3 670 27 29 0 0 chr5 11269359 11269393 -141267866 + AT_rich Low_complexity Low_complexity 1 34 0 3 83 7896 168 40 7 chr5 11271088 11272693 -141264566 + L1_Mur1 LINE L1 3368 5026 -860 3 671 5097 201 30 12 chr5 11272700 11273809 -141263450 + Lx3C LINE L1 5843 6971 -5 3 671 1270 310 77 0 chr5 11273837 11274328 -141262931 + Lx7 LINE L1 6702 7230 -466 4 671 219 147 37 74 chr5 11274392 11274473 -141262786 + T-rich Low_complexity Low_complexity 1 78 0 4 671 22 35 0 0 chr5 11274561 11274590 -141262669 + AT_rich Low_complexity Low_complexity 1 29 0 4 671 608 345 52 52 chr5 11275525 11275968 -141261291 + Lx8 LINE L1 6253 6695 -778 4 671 4435 142 23 14 chr5 11276027 11276757 -141260502 - RMER19A LTR ERVK 0 737 1 4 671 989 83 38 0 chr5 11276774 11276906 -141260353 + B1_Mus2 SINE Alu 1 137 -10 4 671 1034 309 40 59 chr5 11276921 11277362 -141259897 + Lx8 LINE L1 6781 7215 -258 4 671 3829 73 18 4 chr5 11277362 11277858 -141259401 - RLTR1C LTR ERV1 0 503 1 4 671 1034 309 40 59 chr5 11277858 11277921 -141259338 + Lx8 LINE L1 7216 7275 -198 4 671 26 0 0 0 chr5 11278014 11278040 -141259219 + GC_rich Low_complexity Low_complexity 1 26 0 4 671 891 220 0 0 chr5 11278051 11278224 -141259035 - Lx8 LINE L1 -927 6546 6374 4 671 295 333 67 29 chr5 11278403 11278508 -141258751 + PB1D7 SINE Alu 11 119 -1 4 671 303 309 69 38 chr5 11279098 11279229 -141258030 - ID_B1 SINE B4 -9 215 81 4 671 426 151 0 0 chr5 11279246 11279319 -141257940 + C-rich Low_complexity Low_complexity 3 75 0 4 671 402 21 0 0 chr5 11279649 11279696 -141257563 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 4 671 360 0 0 0 chr5 11279853 11279893 -141257366 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 671 21 36 0 0 chr5 11281523 11281551 -141255708 + AT_rich Low_complexity Low_complexity 1 28 0 4 671 276 341 65 70 chr5 11282527 11282726 -141254533 - B3A SINE B2 0 198 1 4 671 2109 96 9 9 chr5 11282843 11283159 -141254100 + Lx3_Mus LINE L1 6694 7009 0 4 671 41 21 0 0 chr5 11283310 11283358 -141253901 + AT_rich Low_complexity Low_complexity 1 48 0 4 671 221 111 89 0 chr5 11283386 11283431 -141253828 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 4 671 8174 38 1 0 chr5 11283472 11284969 -141252290 - L1Md_A LINE L1 -1 6581 5084 4 671 24 0 0 0 chr5 11284973 11284997 -141252262 + AT_rich Low_complexity Low_complexity 1 24 0 4 671 29 28 0 0 chr5 11285172 11285208 -141252051 + AT_rich Low_complexity Low_complexity 1 36 0 4 671 703 217 7 19 chr5 11285632 11285787 -141251472 - Lx7 LINE L1 -333 7363 7211 4 671 782 266 55 25 chr5 11285795 11286017 -141251242 + Lx7 LINE L1 6811 7040 -656 4 671 1109 63 0 7 chr5 11286017 11286155 -141251104 + B1_Mm SINE Alu 2 139 -8 4 671 189 74 0 0 chr5 11286155 11286182 -141251077 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 671 782 266 55 25 chr5 11286182 11286198 -141251061 + Lx7 LINE L1 7041 7052 -644 4 671 405 172 40 10 chr5 11286452 11286552 -141250707 - L1_Mur3 LINE L1 -4225 1655 1553 4 671 505 144 164 0 chr5 11286982 11287086 -141250173 + ORR1B1 LTR MaLR 1 121 -273 4 671 1061 218 82 8 chr5 11287203 11287448 -141249811 + ORR1B1 LTR MaLR 124 386 -8 4 671 367 153 0 89 chr5 11287781 11287860 -141249399 + MT2B LTR ERVL 197 268 -333 4 671 685 120 0 0 chr5 11287791 11287891 -141249368 + B1_Mus2 SINE Alu 48 147 0 4 671 238 143 16 16 chr5 11288451 11288515 -141248744 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 671 2310 216 24 17 chr5 11288593 11289228 -141248031 + Lx5 LINE L1 5278 5922 -1128 4 671 981 304 58 19 chr5 11289258 11289634 -141247625 + Lx5 LINE L1 6027 6417 -633 4 671 419 282 64 14 chr5 11291775 11292046 -141245213 + L1MA5A LINE L1 5794 6086 -205 4 671 27 49 0 0 chr5 11292298 11292339 -141244920 + AT_rich Low_complexity Low_complexity 1 41 0 4 671 264 347 66 0 chr5 11292628 11292749 -141244510 + Lx9 LINE L1 7060 7188 -456 4 671 3612 48 5 0 chr5 11293336 11293770 -141243489 - RLTR10C LTR ERVK 0 436 1 4 671 8017 37 0 1 chr5 11293770 11294707 -141242552 - MMERVK10C-int LTR ERVK 0 7581 6646 4 671 41527 43 0 1 chr5 11294693 11299636 -141237623 - MMERVK10C-int LTR ERVK -1771 5810 870 4 671 1411 88 38 5 chr5 11299634 11299936 -141237323 - MMERVK10C-int LTR ERVK -7182 399 1 4 671 2440 49 14 0 chr5 11299936 11300434 -141236825 - RLTR10C LTR ERVK 0 436 1 4 671 471 242 117 0 chr5 11301073 11301201 -141236058 + Lx9 LINE L1 7244 7386 -258 4 671 427 116 0 5 chr5 11301239 11301314 -141235945 + ORR1B2 LTR MaLR 306 394 0 4 671 763 211 191 0 chr5 11301314 11301518 -141235741 + ORR1B2-int LTR MaLR 1 243 -1266 4 671 2743 169 114 4 chr5 11301532 11302050 -141235209 - Lx2 LINE L1 -1 6996 6422 4 671 250 109 15 30 chr5 11302079 11302145 -141235114 + T-rich Low_complexity Low_complexity 2 66 0 4 671 4658 218 64 28 chr5 11302146 11303236 -141234023 + ORR1B2-int LTR MaLR 270 1403 -106 4 671 1051 102 0 0 chr5 11303236 11303383 -141233876 + B1_Mus2 SINE Alu 1 147 0 4 671 4658 218 64 28 chr5 11303383 11303396 -141233863 + ORR1B2-int LTR MaLR 1404 1417 -92 4 671 396 0 0 0 chr5 11303396 11303440 -141233819 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 4 671 4658 218 64 28 chr5 11303440 11303531 -141233728 + ORR1B2-int LTR MaLR 1418 1508 -1 4 671 1036 188 267 27 chr5 11303531 11303827 -141233432 + ORR1B2 LTR MaLR 1 367 0 4 671 495 33 0 0 chr5 11303838 11303899 -141233360 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 671 36624 28 1 7 chr5 11306091 11311110 -141226149 + L1Md_T LINE L1 606 5586 -297 4 671 8315 37 1 0 chr5 11311110 11312105 -141225154 + L1Md_T LINE L1 5587 6582 0 4 671 261 119 0 0 chr5 11312115 11312157 -141225102 + (A)n Simple_repeat Simple_repeat 1 42 0 4 671 225 351 32 11 chr5 11312157 11312252 -141225007 - MTE2a LTR MaLR -43 336 240 4 671 345 284 19 10 chr5 11312398 11312501 -141224758 - MTE2a LTR MaLR -218 161 58 4 671 273 308 26 0 chr5 11312501 11312579 -141224680 - MTE2a LTR MaLR -281 98 19 4 671 497 266 64 103 chr5 11312820 11313232 -141224027 + RMER2 LTR ERV1 15 551 -16 4 671 33 56 0 0 chr5 11313573 11313627 -141223632 + AT_rich Low_complexity Low_complexity 1 54 0 4 671 21 0 0 0 chr5 11314078 11314099 -141223160 + AT_rich Low_complexity Low_complexity 1 21 0 4 671 2092 167 64 89 chr5 11314099 11314580 -141222679 - Lx4A LINE L1 0 7058 6590 4 671 454 333 57 53 chr5 11314860 11315251 -141222008 + MTEa LTR MaLR 10 368 -11 4 671 2063 109 10 3 chr5 11315499 11315803 -141221456 + L1_Mus3 LINE L1 6331 6636 -2 4 671 223 286 79 0 chr5 11316132 11316195 -141221064 - L2c LINE L2 -33 3354 3287 4 671 190 0 67 0 chr5 11317378 11317408 -141219851 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 4 671 1079 204 49 73 chr5 11317424 11317768 -141219491 + RLTR9A LTR ERVK 1 336 -32 4 671 2606 210 13 9 chr5 11318028 11318556 -141218703 - Lx2A1 LINE L1 -6 7002 6473 4 671 207 0 0 0 chr5 11319134 11319157 -141218102 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 4 671 210 364 65 43 chr5 11319254 11319283 -141217976 + ID_B1 SINE B4 84 224 0 4 671 270 352 92 9 chr5 11319283 11319392 -141217867 + B1F2 SINE Alu 32 149 0 4 671 232 370 89 18 chr5 11320453 11320621 -141216638 - FordPrefect DNA Tip100 -174 1509 1330 4 671 282 361 82 18 chr5 11320635 11320855 -141216404 - FordPrefect DNA Tip100 -393 1290 1057 4 671 209 209 0 0 chr5 11321375 11321418 -141215841 + T-rich Low_complexity Low_complexity 3 45 0 4 671 500 340 14 9 chr5 11322636 11322847 -141214412 + B3 SINE B2 5 216 0 4 671 33 73 0 0 chr5 11322891 11322959 -141214300 + AT_rich Low_complexity Low_complexity 1 68 0 4 671 447 323 7 27 chr5 11323134 11323327 -141213932 - Lx8 LINE L1 -453 7020 6825 4 671 21 71 0 0 chr5 11324620 11324662 -141212597 + AT_rich Low_complexity Low_complexity 1 42 0 4 671 22 0 0 0 chr5 11324743 11324765 -141212494 + AT_rich Low_complexity Low_complexity 1 22 0 4 671 234 62 0 0 chr5 11324963 11324995 -141212264 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 671 285 346 0 32 chr5 11325307 11325492 -141211767 + GA-rich Low_complexity Low_complexity 2 180 0 4 671 334 318 8 45 chr5 11325558 11325778 -141211481 + GA-rich Low_complexity Low_complexity 1 211 0 4 671 791 162 0 11 chr5 11325791 11325972 -141211287 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 4 671 233 325 60 0 chr5 11326009 11326092 -141211167 - MLT1A0 LTR MaLR -191 174 87 4 671 1247 347 98 40 chr5 11326362 11327483 -141209776 - Lx8 LINE L1 -215 7258 6072 4 671 1712 186 30 20 chr5 11327483 11327889 -141209370 - RMER17C LTR ERVK 0 410 1 4 671 1247 347 98 40 chr5 11327889 11327900 -141209359 - Lx8 LINE L1 -1402 6071 6060 4 671 1455 244 116 45 chr5 11328042 11328182 -141209077 + RMER2 LTR ERV1 3 188 -379 4 671 261 0 0 0 chr5 11328182 11328211 -141209048 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 671 1455 244 116 45 chr5 11328211 11328598 -141208661 + RMER2 LTR ERV1 189 567 0 4 671 21 71 0 0 chr5 11329798 11329840 -141207419 + AT_rich Low_complexity Low_complexity 1 42 0 4 671 711 78 8 17 chr5 11329840 11329958 -141207301 + (TA)n Simple_repeat Simple_repeat 1 117 0 4 671 254 280 27 0 chr5 11329958 11330033 -141207226 + RMER2 LTR ERV1 491 567 0 4 671 39 38 0 0 chr5 11330060 11330113 -141207146 + AT_rich Low_complexity Low_complexity 1 53 0 4 671 944 119 0 0 chr5 11330114 11330248 -141207011 + B1_Mm SINE Alu 1 134 -13 4 671 247 49 49 0 chr5 11330258 11330299 -141206960 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 671 552 140 0 0 chr5 11330301 11330394 -141206865 + (GA)n Simple_repeat Simple_repeat 2 94 0 4 671 13230 22 3 0 chr5 11331024 11332578 -141204681 + L1Md_T LINE L1 4029 5586 -297 4 671 8422 30 2 0 chr5 11332578 11333601 -141203658 + L1Md_T LINE L1 5587 6582 0 4 671 721 232 58 0 chr5 11333897 11334052 -141203207 + ORR1D1 LTR MaLR 1 164 -210 4 671 495 0 0 0 chr5 11334057 11334112 -141203147 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 671 241 183 21 11 chr5 11334140 11334234 -141203025 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 4 671 798 271 34 5 chr5 11334237 11334445 -141202814 + ORR1D1 LTR MaLR 158 371 -3 4 671 1210 48 0 0 chr5 11334479 11334626 -141202633 - B1_Mus2 SINE Alu 0 147 1 4 671 2036 55 0 4 chr5 11335399 11335653 -141201606 - L1_Mus1 LINE L1 -229 6338 6086 4 671 1843 67 0 4 chr5 11335653 11335892 -141201367 + L1_Mus1 LINE L1 6329 6566 -1 4 671 581 356 4 39 chr5 11335932 11336163 -141201096 + MTE2b LTR MaLR 103 325 -54 4 671 1160 223 102 35 chr5 11336189 11336621 -141200638 - Lx9 LINE L1 -11 7633 7173 4 671 22 56 0 0 chr5 11336769 11336805 -141200454 + AT_rich Low_complexity Low_complexity 1 36 0 4 671 261 277 0 12 chr5 11336899 11336983 -141200276 + L1M2 LINE L1 5417 5499 -792 4 671 288 302 23 23 chr5 11337221 11337397 -141199862 + L1M2 LINE L1 5572 5747 -442 4 671 323 78 20 0 chr5 11337502 11337553 -141199706 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 4 671 264 163 0 0 chr5 11338067 11338116 -141199143 + Lx2A1 LINE L1 4350 4398 -1479 4 671 1376 142 13 0 chr5 11338133 11338372 -141198887 - Lx2A1 LINE L1 -1237 4640 4399 4 671 7924 168 18 32 chr5 11338370 11340763 -141196496 + Lx2A1 LINE L1 4652 7008 0 4 671 686 278 132 143 chr5 11340792 11341233 -141196026 - RMER6B LTR ERVK -25 436 1 4 671 444 105 0 0 chr5 11343410 11343486 -141193773 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 671 264 282 68 0 chr5 11346315 11346418 -141190841 + B1_Mur4 SINE Alu 19 128 -22 4 671 362 240 100 8 chr5 11346828 11346958 -141190301 - B3 SINE B2 -2 214 73 4 671 3425 194 56 4 chr5 11347740 11348508 -141188751 - RMER17D2 LTR ERVK 0 809 2 4 671 231 103 0 0 chr5 11349222 11349261 -141187998 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 671 220 176 39 0 chr5 11349421 11349472 -141187787 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 4 671 540 45 0 0 chr5 11349473 11349540 -141187719 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 671 480 35 0 0 chr5 11349540 11349597 -141187662 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 671 2997 203 47 46 chr5 11349880 11350778 -141186481 + L1_Mur2 LINE L1 3081 3979 -1898 5 671 33 25 0 0 chr5 11352289 11352329 -141184930 + AT_rich Low_complexity Low_complexity 1 40 0 5 671 514 153 10 0 chr5 11352368 11352466 -141184793 + L1_Mur2 LINE L1 4105 4203 -1674 5 671 4055 205 25 91 chr5 11352466 11353593 -141183666 - ORR1A4-int LTR MaLR -896 1067 15 5 671 962 240 126 68 chr5 11353606 11353915 -141183344 - ORR1A4 LTR MaLR 0 329 3 5 671 1870 168 3 0 chr5 11353921 11354243 -141183016 - ORR1A2 LTR MaLR 0 327 5 5 671 6270 157 41 5 chr5 11354247 11355382 -141181877 - ORR1A2-int LTR MaLR 0 1963 788 5 671 235 273 98 43 chr5 11355372 11355464 -141181795 - RMER6B LTR ERVK -80 381 285 5 671 33 73 0 0 chr5 11355520 11355588 -141181671 + AT_rich Low_complexity Low_complexity 1 68 0 5 671 1855 123 0 0 chr5 11355601 11355877 -141181382 - L1_Mus4 LINE L1 -6 6630 6355 5 671 654 209 108 12 chr5 11355925 11356182 -141181077 - RMER6B LTR ERVK -251 210 1 5 671 22 0 0 0 chr5 11356354 11356376 -141180883 + AT_rich Low_complexity Low_complexity 1 22 0 5 671 1676 191 40 83 chr5 11356407 11356806 -141180453 + RLTR41 LTR ERV1 65 446 0 5 671 773 145 0 68 chr5 11356837 11356970 -141180289 - B2_Mm2 SINE B2 -70 125 2 5 671 413 202 34 0 chr5 11357087 11357176 -141180083 - RLTR19 LTR ERVK -1 498 404 5 671 27 29 0 0 chr5 11357806 11357840 -141179419 + AT_rich Low_complexity Low_complexity 1 34 0 5 671 8053 165 38 6 chr5 11359538 11361146 -141176113 + L1_Mur1 LINE L1 3368 5026 -860 5 671 5180 204 27 11 chr5 11361153 11362264 -141174995 + Lx3C LINE L1 5843 6971 -5 5 671 1232 305 84 2 chr5 11362292 11362781 -141174478 + Lx7 LINE L1 6702 7230 -466 5 671 219 147 37 74 chr5 11362845 11362926 -141174333 + T-rich Low_complexity Low_complexity 1 78 0 5 671 22 35 0 0 chr5 11363014 11363043 -141174216 + AT_rich Low_complexity Low_complexity 1 29 0 5 671 609 331 59 59 chr5 11363979 11364422 -141172837 + Lx8 LINE L1 6253 6695 -778 5 671 4356 147 23 14 chr5 11364481 11365211 -141172048 - RMER19A LTR ERVK 0 737 1 5 671 960 85 39 0 chr5 11365228 11365358 -141171901 + B1_Mus2 SINE Alu 1 135 -12 5 671 1040 308 40 58 chr5 11365375 11365815 -141171444 + Lx8 LINE L1 6781 7215 -258 5 671 3997 75 0 0 chr5 11365815 11366318 -141170941 - RLTR1C LTR ERV1 0 503 1 5 671 1040 308 40 58 chr5 11366318 11366374 -141170885 + Lx8 LINE L1 7216 7268 -205 5 671 897 269 54 12 chr5 11366428 11366669 -141170590 - Lx8 LINE L1 -849 6624 6374 5 671 306 333 67 29 chr5 11366838 11366943 -141170316 + PB1D7 SINE Alu 11 119 -1 5 671 272 306 93 39 chr5 11367530 11367659 -141169600 - ID_B1 SINE B4 -8 216 81 5 671 353 149 15 0 chr5 11367672 11367739 -141169520 + C-rich Low_complexity Low_complexity 3 70 0 5 671 351 0 0 0 chr5 11368060 11368099 -141169160 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 5 671 369 0 0 0 chr5 11368255 11368296 -141168963 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 671 5954 15 0 0 chr5 11369201 11369883 -141167376 + L1Md_T LINE L1 4905 5586 -297 5 671 8900 7 0 9 chr5 11369883 11370906 -141166353 + L1Md_T LINE L1 5587 6582 0 5 671 21 36 0 0 chr5 11371634 11371662 -141165597 + AT_rich Low_complexity Low_complexity 1 28 0 5 671 276 341 65 70 chr5 11372621 11372820 -141164439 - B3A SINE B2 0 198 1 5 671 2097 96 13 6 chr5 11372937 11373251 -141164008 + Lx3_Mus LINE L1 6694 7009 0 5 671 216 129 97 0 chr5 11373389 11373451 -141163808 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 5 671 180 158 0 0 chr5 11373480 11373518 -141163741 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 5 671 205 195 0 0 chr5 11373554 11373595 -141163664 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 671 29 28 0 0 chr5 11373764 11373800 -141163459 + AT_rich Low_complexity Low_complexity 1 36 0 5 671 24 0 0 0 chr5 11374018 11374042 -141163217 + AT_rich Low_complexity Low_complexity 1 24 0 5 671 664 230 7 19 chr5 11374223 11374378 -141162881 - Lx7 LINE L1 -333 7363 7211 5 671 895 272 12 25 chr5 11374386 11374618 -141162641 + Lx7 LINE L1 6811 7040 -656 5 671 1109 63 0 7 chr5 11374618 11374756 -141162503 + B1_Mm SINE Alu 2 139 -8 5 671 189 74 0 0 chr5 11374756 11374783 -141162476 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 671 895 272 12 25 chr5 11374783 11374799 -141162460 + Lx7 LINE L1 7041 7052 -644 5 671 339 202 40 10 chr5 11375050 11375150 -141162109 - L1_Mur3 LINE L1 -4225 1655 1553 5 671 1658 189 105 6 chr5 11375580 11375931 -141161328 + ORR1B1 LTR MaLR 1 386 -8 5 671 358 167 0 89 chr5 11376265 11376344 -141160915 + MT2B LTR ERVL 197 268 -333 5 671 659 140 0 0 chr5 11376275 11376375 -141160884 + B1_Mus2 SINE Alu 48 147 0 5 671 256 138 15 15 chr5 11376929 11376995 -141160264 + (TA)n Simple_repeat Simple_repeat 1 66 0 5 671 2296 210 25 21 chr5 11377073 11377710 -141159549 + Lx5 LINE L1 5278 5922 -1128 5 671 1012 302 62 3 chr5 11377740 11378109 -141159150 + Lx5 LINE L1 6027 6417 -633 5 671 23 33 0 0 chr5 11380169 11380199 -141157060 + AT_rich Low_complexity Low_complexity 1 30 0 5 671 277 283 133 9 chr5 11380261 11380459 -141156800 + L1MA8 LINE L1 5802 6012 -177 5 671 4989 30 0 0 chr5 11382208 11382801 -141154458 - L1_Mm LINE L1 -968 4915 4323 5 671 3280 38 2 0 chr5 11382802 11383198 -141154061 + L1Md_T LINE L1 6184 6580 -2 5 671 26 0 0 0 chr5 11383222 11383248 -141154011 + AT_rich Low_complexity Low_complexity 1 26 0 5 671 266 244 270 15 chr5 11383574 11383774 -141153485 - Lx9 LINE L1 -7 7637 7387 5 671 495 234 117 0 chr5 11383773 11383901 -141153358 + Lx9 LINE L1 7244 7386 -258 5 671 416 100 0 0 chr5 11383954 11384014 -141153245 + ORR1B2 LTR MaLR 335 394 0 5 671 776 201 191 0 chr5 11384014 11384218 -141153041 + ORR1B2-int LTR MaLR 1 243 -1266 5 671 2770 163 114 2 chr5 11384232 11384749 -141152510 - Lx2 LINE L1 -1 6996 6422 5 671 4594 221 66 26 chr5 11384812 11385898 -141151361 + ORR1B2-int LTR MaLR 270 1403 -106 5 671 1123 82 0 0 chr5 11385898 11386045 -141151214 + B1_Mus2 SINE Alu 1 147 0 5 671 4594 221 66 26 chr5 11386045 11386058 -141151201 + ORR1B2-int LTR MaLR 1404 1417 -92 5 671 288 0 0 0 chr5 11386058 11386090 -141151169 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 5 671 4594 221 66 26 chr5 11386090 11386181 -141151078 + ORR1B2-int LTR MaLR 1418 1508 -1 5 671 1025 197 264 24 chr5 11386181 11386477 -141150782 + ORR1B2 LTR MaLR 1 367 0 5 671 546 43 0 0 chr5 11386488 11386557 -141150702 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 671 452 308 101 110 chr5 11388690 11389077 -141148182 - MTE2a LTR MaLR -15 364 18 5 671 343 231 0 0 chr5 11389319 11389384 -141147875 + RMER2 LTR ERV1 15 79 -488 5 671 389 276 103 124 chr5 11389382 11389713 -141147546 + RMER2 LTR ERV1 228 551 -16 5 671 21 82 0 0 chr5 11390053 11390102 -141147157 + AT_rich Low_complexity Low_complexity 1 49 0 5 671 2356 165 87 14 chr5 11390573 11391010 -141146249 - Lx4A LINE L1 0 7058 6590 5 671 424 358 66 76 chr5 11391273 11391429 -141145830 + MTEa LTR MaLR 1 154 -267 5 671 3927 42 25 2 chr5 11391429 11391909 -141145350 + MT2_Mm LTR ERVL 3 493 0 5 671 424 346 63 91 chr5 11391909 11392162 -141145097 + MTEa LTR MaLR 121 368 -11 5 671 2032 113 13 3 chr5 11392410 11392713 -141144546 + L1_Mus3 LINE L1 6331 6636 -2 5 671 201 310 68 27 chr5 11393042 11393115 -141144144 - L2c LINE L2 -33 3354 3279 5 671 8960 3 1 6 chr5 11394178 11395260 -141141999 - L1Md_A LINE L1 0 6582 5504 5 671 329 0 24 0 chr5 11395522 11395563 -141141696 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 5 671 898 223 48 74 chr5 11395579 11395957 -141141302 + RLTR9A LTR ERVK 1 368 0 5 671 2525 202 14 16 chr5 11396197 11396709 -141140550 - Lx2A1 LINE L1 -5 7003 6493 5 671 27 0 0 0 chr5 11397303 11397330 -141139929 + AT_rich Low_complexity Low_complexity 1 27 0 5 671 210 364 65 43 chr5 11397426 11397455 -141139804 + ID_B1 SINE B4 84 224 0 5 671 270 352 92 9 chr5 11397455 11397564 -141139695 + B1F2 SINE Alu 32 149 0 5 671 356 355 77 18 chr5 11398799 11399020 -141138239 - FordPrefect DNA Tip100 -393 1290 1057 5 671 373 316 12 129 chr5 11399661 11399901 -141137358 + B3 SINE B2 5 216 0 5 671 23 68 0 0 chr5 11399945 11399989 -141137270 + AT_rich Low_complexity Low_complexity 1 44 0 5 671 455 315 93 21 chr5 11400184 11400475 -141136784 - Lx8 LINE L1 -453 7020 6701 5 671 427 322 14 7 chr5 11400537 11400681 -141136578 + RSINE1 SINE B4 4 148 -17 5 671 343 302 142 19 chr5 11400761 11400923 -141136336 + B3A SINE B2 1 182 -16 5 671 774 207 0 0 chr5 11400942 11401121 -141136138 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 671 23 54 0 0 chr5 11401123 11401160 -141136099 + AT_rich Low_complexity Low_complexity 1 37 0 5 671 22 0 0 0 chr5 11402531 11402553 -141134706 + AT_rich Low_complexity Low_complexity 1 22 0 5 671 405 0 0 0 chr5 11402751 11402796 -141134463 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 671 247 348 70 48 chr5 11402934 11403121 -141134138 - MLT1A0 LTR MaLR -10 355 165 5 83 242 358 7 19 chr5 11403123 11403305 -141133954 + GA-rich Low_complexity Low_complexity 1 179 0 5 672 328 291 18 54 chr5 11403363 11403530 -141133729 + GA-rich Low_complexity Low_complexity 1 161 0 5 672 759 189 17 0 chr5 11403519 11403757 -141133502 + (CAGAGA)n Simple_repeat Simple_repeat 1 241 0 5 672 1300 346 92 45 chr5 11404099 11405219 -141132040 - Lx8 LINE L1 -215 7258 6072 5 672 1728 176 42 20 chr5 11405219 11405620 -141131639 - RMER17C LTR ERVK 0 410 1 5 672 1300 346 92 45 chr5 11405620 11405773 -141131486 - Lx8 LINE L1 -1402 6071 5922 5 672 1228 242 192 50 chr5 11405773 11406268 -141130991 + RMER2 LTR ERV1 3 567 0 5 672 1300 346 92 45 chr5 11406268 11406347 -141130912 - Lx8 LINE L1 -1552 5921 5842 5 672 409 131 12 12 chr5 11407528 11407613 -141129646 + (TA)n Simple_repeat Simple_repeat 2 86 0 5 672 265 282 26 0 chr5 11407613 11407691 -141129568 + RMER2 LTR ERV1 488 567 0 5 672 30 59 0 0 chr5 11407718 11407769 -141129490 + AT_rich Low_complexity Low_complexity 1 51 0 5 672 1099 75 0 20 chr5 11407770 11407920 -141129339 + B1_Mm SINE Alu 1 147 0 5 672 411 98 0 0 chr5 11407926 11407987 -141129272 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 672 441 161 0 0 chr5 11407989 11408076 -141129183 + GA-rich Low_complexity Low_complexity 2 88 0 5 672 738 244 51 23 chr5 11408990 11409166 -141128093 + ORR1D1 LTR MaLR 1 181 -193 5 672 186 43 0 0 chr5 11409166 11409189 -141128070 + (TC)n Simple_repeat Simple_repeat 2 24 0 5 672 243 129 48 38 chr5 11409215 11409320 -141127939 + (TCTCTG)n Simple_repeat Simple_repeat 3 108 0 5 672 779 253 40 15 chr5 11409320 11409521 -141127738 + ORR1D1 LTR MaLR 166 371 -3 5 672 2009 59 0 4 chr5 11410296 11410550 -141126709 - L1_Mus1 LINE L1 -229 6338 6086 5 672 1815 67 0 4 chr5 11410550 11410789 -141126470 + L1_Mus1 LINE L1 6329 6566 -1 5 672 527 365 4 39 chr5 11410829 11411060 -141126199 + MTE2b LTR MaLR 103 325 -54 6 672 1179 226 95 30 chr5 11411086 11411519 -141125740 - Lx9 LINE L1 -11 7633 7173 6 672 22 0 0 0 chr5 11411682 11411704 -141125555 + AT_rich Low_complexity Low_complexity 1 22 0 6 672 261 277 0 12 chr5 11411799 11411883 -141125376 + L1M2 LINE L1 5417 5499 -792 6 672 407 52 17 0 chr5 11412407 11412465 -141124794 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 6 672 237 184 0 0 chr5 11412978 11413027 -141124232 + Lx2A1 LINE L1 4350 4398 -1479 6 672 1363 142 13 0 chr5 11413044 11413283 -141123976 - Lx2A1 LINE L1 -1237 4640 4399 6 672 7780 166 17 30 chr5 11413290 11415662 -141121597 + Lx2A1 LINE L1 4652 7000 -8 6 672 499 275 180 149 chr5 11415698 11416121 -141121138 - RMER6B LTR ERVK -25 436 1 6 672 462 103 0 0 chr5 11418357 11418435 -141118824 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 672 234 333 57 0 chr5 11421264 11421369 -141115890 + B1F2 SINE Alu 18 128 -21 6 672 362 240 100 8 chr5 11421777 11421907 -141115352 - B3 SINE B2 -2 214 73 6 672 3392 190 64 4 chr5 11422689 11423451 -141113808 - RMER17D2 LTR ERVK 0 809 2 6 672 267 93 0 0 chr5 11424164 11424207 -141113052 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 672 522 46 0 0 chr5 11424417 11424482 -141112777 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 672 447 19 0 0 chr5 11424482 11424533 -141112726 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 672 3027 201 56 44 chr5 11424810 11425705 -141111554 + L1_Mur2 LINE L1 3074 3979 -1898 6 672 45 0 0 0 chr5 11427212 11427257 -141110002 + AT_rich Low_complexity Low_complexity 1 45 0 6 672 563 177 9 0 chr5 11427296 11427409 -141109850 + L1_Mur2 LINE L1 4105 4218 -1659 6 672 1330 206 3 9 chr5 11427411 11427739 -141109520 - ORR1A4-int LTR MaLR -920 1043 718 6 672 672 197 18 204 chr5 11427631 11427905 -141109354 - MT2B LTR ERVL -344 257 35 6 672 2896 204 35 26 chr5 11427847 11428532 -141108727 - ORR1A4-int LTR MaLR -1258 705 15 6 672 855 246 133 75 chr5 11428542 11428850 -141108409 - ORR1A4 LTR MaLR -1 328 3 6 672 1819 177 3 0 chr5 11428856 11429178 -141108081 - ORR1A2 LTR MaLR 0 327 5 6 672 6332 151 45 3 chr5 11429182 11430311 -141106948 - ORR1A2-int LTR MaLR 0 1963 788 6 672 261 301 23 46 chr5 11430301 11430388 -141106871 - RMER6B LTR ERVK -80 381 297 6 672 24 91 0 0 chr5 11430450 11430516 -141106743 + AT_rich Low_complexity Low_complexity 1 66 0 6 672 1532 147 66 0 chr5 11430529 11430788 -141106471 - L1_Mus4 LINE L1 -6 6630 6355 6 672 482 235 157 24 chr5 11430836 11431002 -141106257 - RMER6B LTR ERVK -251 210 23 6 672 679 154 57 0 chr5 11430970 11431093 -141106166 - RMER6B LTR ERVK -331 130 1 6 672 1675 196 38 82 chr5 11431318 11431718 -141105541 + RLTR41 LTR ERV1 65 446 0 6 672 766 153 0 68 chr5 11431749 11431882 -141105377 - B2_Mm2 SINE B2 -70 125 2 6 672 413 202 34 0 chr5 11431999 11432088 -141105171 - RLTR19 LTR ERVK -1 498 404 6 672 445 173 0 0 chr5 11434430 11434511 -141102748 + L1_Mur1 LINE L1 3359 3439 -2438 6 672 804 74 0 0 chr5 11434511 11434619 -141102640 + (GAAA)n Simple_repeat Simple_repeat 2 109 0 6 672 7643 162 38 8 chr5 11434619 11436104 -141101155 + L1_Mur1 LINE L1 3498 5026 -860 6 672 5222 197 27 12 chr5 11436111 11437223 -141100036 + Lx3C LINE L1 5843 6971 -5 6 672 1207 310 80 2 chr5 11437251 11437749 -141099510 + Lx7 LINE L1 6702 7238 -458 6 672 22 35 0 0 chr5 11437958 11437987 -141099272 + AT_rich Low_complexity Low_complexity 1 29 0 6 672 180 306 79 30 chr5 11438265 11438366 -141098893 - L4 LINE RTE -630 1399 1294 6 672 603 337 56 56 chr5 11438919 11439362 -141097897 + Lx8 LINE L1 6253 6695 -778 6 672 4433 142 23 14 chr5 11439421 11440151 -141097108 - RMER19A LTR ERVK 0 737 1 6 672 977 83 38 0 chr5 11440168 11440300 -141096959 + B1_Mus2 SINE Alu 1 137 -10 6 672 1077 303 40 58 chr5 11440315 11440755 -141096504 + Lx8 LINE L1 6781 7215 -258 6 672 3925 67 16 4 chr5 11440755 11441252 -141096007 - RLTR1C LTR ERV1 0 503 1 6 672 1077 303 40 58 chr5 11441252 11441308 -141095951 + Lx8 LINE L1 7216 7268 -205 6 672 960 239 53 36 chr5 11441362 11441609 -141095650 - Lx8 LINE L1 -849 6624 6374 6 672 284 343 67 29 chr5 11441782 11441887 -141095372 + PB1D7 SINE Alu 11 119 -1 6 672 286 323 68 38 chr5 11442476 11442608 -141094651 - ID_B1 SINE B4 -8 216 81 6 672 426 151 0 0 chr5 11442625 11442698 -141094561 + C-rich Low_complexity Low_complexity 3 75 0 6 672 366 23 0 0 chr5 11443028 11443071 -141094188 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 6 672 429 54 0 0 chr5 11443228 11443284 -141093975 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 672 21 36 0 0 chr5 11444915 11444943 -141092316 + AT_rich Low_complexity Low_complexity 1 28 0 6 672 292 335 65 70 chr5 11445902 11446101 -141091158 - B3A SINE B2 0 198 1 6 672 2097 93 13 6 chr5 11446218 11446532 -141090727 + Lx3_Mus LINE L1 6694 7009 0 6 672 216 129 97 0 chr5 11446669 11446731 -141090528 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 6 672 209 100 50 0 chr5 11446760 11446800 -141090459 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 6 672 205 195 0 0 chr5 11446842 11446883 -141090376 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 672 29 28 0 0 chr5 11447052 11447088 -141090171 + AT_rich Low_complexity Low_complexity 1 36 0 6 672 24 0 0 0 chr5 11447306 11447330 -141089929 + AT_rich Low_complexity Low_complexity 1 24 0 6 672 679 224 7 19 chr5 11447511 11447666 -141089593 - Lx7 LINE L1 -333 7363 7211 6 672 877 260 29 25 chr5 11447674 11447902 -141089357 + Lx7 LINE L1 6811 7040 -656 6 672 1080 70 0 7 chr5 11447902 11448040 -141089219 + B1_Mm SINE Alu 2 139 -8 6 672 189 74 0 0 chr5 11448040 11448067 -141089192 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 672 877 260 29 25 chr5 11448067 11448083 -141089176 + Lx7 LINE L1 7041 7052 -644 6 672 334 202 40 10 chr5 11448336 11448436 -141088823 - L1_Mur3 LINE L1 -4225 1655 1553 6 672 1579 201 105 6 chr5 11448866 11449217 -141088042 + ORR1B1 LTR MaLR 1 386 -8 6 672 339 181 0 89 chr5 11449551 11449630 -141087629 + MT2B LTR ERVL 197 268 -333 6 672 650 150 0 0 chr5 11449561 11449661 -141087598 + B1_Mus2 SINE Alu 48 147 0 6 672 184 158 17 17 chr5 11450215 11450273 -141086986 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 672 2349 205 25 19 chr5 11450351 11450986 -141086273 + Lx6 LINE L1 5278 5919 -1541 6 672 993 298 33 2 chr5 11450997 11451386 -141085873 + Lx6 LINE L1 5990 6417 -633 6 672 23 33 0 0 chr5 11453448 11453478 -141083781 + AT_rich Low_complexity Low_complexity 1 30 0 6 672 360 263 137 8 chr5 11453524 11453742 -141083517 + L1MA8 LINE L1 5786 6028 -272 6 672 227 284 91 0 chr5 11454385 11454473 -141082786 + Lx9 LINE L1 7060 7155 -489 6 672 5031 27 0 0 chr5 11455485 11456079 -141081180 - L1_Mm LINE L1 -968 4915 4322 6 672 3242 43 2 0 chr5 11456079 11456476 -141080783 + L1Md_T LINE L1 6184 6581 -1 6 672 183 42 0 0 chr5 11456502 11456526 -141080733 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 6 672 283 249 270 15 chr5 11456853 11457053 -141080206 - Lx9 LINE L1 -7 7637 7387 6 672 514 227 117 0 chr5 11457052 11457180 -141080079 + Lx9 LINE L1 7244 7386 -258 6 672 427 116 0 5 chr5 11457218 11457293 -141079966 + ORR1B2 LTR MaLR 306 394 0 6 672 777 211 191 0 chr5 11457293 11457497 -141079762 + ORR1B2-int LTR MaLR 1 243 -1266 6 672 2542 168 116 2 chr5 11457511 11457995 -141079264 - Lx2 LINE L1 -1 6996 6458 6 672 1599 209 77 10 chr5 11457997 11458059 -141079200 + ORR1B2-int LTR MaLR 200 268 -1241 6 672 204 40 0 0 chr5 11458059 11458084 -141079175 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 6 672 1599 209 77 10 chr5 11458084 11458413 -141078846 + ORR1B2-int LTR MaLR 269 616 -893 6 672 5559 157 24 31 chr5 11458418 11459527 -141077732 + L1Md_T LINE L1 104 1205 -5411 6 672 36168 34 0 0 chr5 11459533 11463950 -141073309 + L1Md_T LINE L1 1170 5586 -297 6 672 7998 53 1 0 chr5 11463950 11464945 -141072314 + L1Md_T LINE L1 5587 6582 0 6 672 3196 227 53 22 chr5 11464945 11465570 -141071689 + ORR1B2-int LTR MaLR 615 1262 -247 6 672 216 86 0 0 chr5 11465570 11465605 -141071654 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 672 3196 227 53 22 chr5 11465605 11465740 -141071519 + ORR1B2-int LTR MaLR 1263 1402 -107 6 672 1061 102 0 0 chr5 11465740 11465887 -141071372 + B1_Mm SINE Alu 1 147 0 6 672 3196 227 53 22 chr5 11465887 11465901 -141071358 + ORR1B2-int LTR MaLR 1403 1415 -94 6 672 567 0 0 0 chr5 11465901 11465964 -141071295 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 6 672 3196 227 53 22 chr5 11465964 11466055 -141071204 + ORR1B2-int LTR MaLR 1416 1506 -3 6 672 1017 191 267 27 chr5 11466055 11466351 -141070908 + ORR1B2 LTR MaLR 1 367 0 6 672 24 67 0 0 chr5 11467948 11467993 -141069266 + AT_rich Low_complexity Low_complexity 1 45 0 6 672 426 300 100 112 chr5 11468507 11468895 -141068364 - MTE2a LTR MaLR -15 364 18 6 672 320 246 0 0 chr5 11469137 11469202 -141068057 + RMER2 LTR ERV1 15 79 -488 6 672 634 257 150 85 chr5 11469191 11469531 -141067728 + RMER2 LTR ERV1 190 551 -16 6 672 29 60 0 0 chr5 11469872 11469922 -141067337 + AT_rich Low_complexity Low_complexity 1 50 0 6 672 23 0 0 0 chr5 11470377 11470400 -141066859 + AT_rich Low_complexity Low_complexity 1 23 0 6 672 2226 164 110 14 chr5 11470400 11470828 -141066431 - Lx4A LINE L1 0 7058 6590 6 672 456 323 62 59 chr5 11471108 11471503 -141065756 + MTEa LTR MaLR 6 368 -11 6 672 2112 102 10 3 chr5 11471751 11472055 -141065204 + L1_Mus3 LINE L1 6331 6636 -2 6 672 220 296 68 27 chr5 11472384 11472457 -141064802 - L2c LINE L2 -33 3354 3279 6 672 396 40 0 0 chr5 11473636 11473686 -141063573 + (TTTTG)n Simple_repeat Simple_repeat 4 53 0 6 672 863 234 45 74 chr5 11473702 11474081 -141063178 + RLTR9A LTR ERVK 1 368 0 6 672 2459 216 11 17 chr5 11474318 11474855 -141062404 - Lx2A1 LINE L1 -2 7006 6473 6 672 234 0 0 0 chr5 11475415 11475441 -141061818 + (T)n Simple_repeat Simple_repeat 1 26 0 6 672 2363 140 40 42 chr5 11475613 11476089 -141061170 + IAPLTR2_Mm LTR ERVK 1 475 0 6 672 4449 43 116 0 chr5 11476089 11476676 -141060583 + IAPEz-int LTR ERVK 8 662 -5819 6 672 442 66 0 32 chr5 11476676 11476739 -141060520 + IAPEz-int LTR ERVK 1359 1419 -5062 6 672 1834 115 4 4 chr5 11476728 11476990 -141060269 + IAPEz-int LTR ERVK 2236 2497 -5183 6 672 932 73 24 0 chr5 11476987 11477110 -141060149 + IAPEz-int LTR ERVK 4785 4910 -2770 6 672 20913 17 3 0 chr5 11477112 11479464 -141057795 + IAPEz-int LTR ERVK 4123 6481 0 6 672 2361 140 40 42 chr5 11479464 11479940 -141057319 + IAPLTR2_Mm LTR ERVK 1 475 0 6 672 23800 35 2 0 chr5 11481217 11484119 -141053140 + L1Md_T LINE L1 2678 5586 -297 6 672 8132 48 0 0 chr5 11484119 11485115 -141052144 + L1Md_T LINE L1 5587 6582 0 6 672 345 353 78 19 chr5 11485168 11485373 -141051886 - FordPrefect DNA Tip100 -393 1290 1074 6 672 522 316 28 37 chr5 11486026 11486240 -141051019 + B3 SINE B2 5 216 0 6 672 30 45 0 0 chr5 11486284 11486328 -141050931 + AT_rich Low_complexity Low_complexity 1 44 0 6 672 472 321 113 17 chr5 11486523 11486815 -141050444 - Lx8 LINE L1 -453 7020 6701 6 672 475 308 14 7 chr5 11486877 11487021 -141050238 + RSINE1 SINE B4 4 148 -17 6 672 337 302 142 19 chr5 11487101 11487263 -141049996 + B3A SINE B2 1 182 -16 6 672 390 228 0 0 chr5 11487279 11487380 -141049879 + (CA)n Simple_repeat Simple_repeat 1 101 0 6 672 30 27 0 0 chr5 11487381 11487418 -141049841 + AT_rich Low_complexity Low_complexity 1 37 0 6 672 27 87 0 0 chr5 11488665 11488734 -141048525 + AT_rich Low_complexity Low_complexity 1 69 0 6 672 23 78 0 0 chr5 11488759 11488810 -141048449 + AT_rich Low_complexity Low_complexity 1 51 0 6 672 351 0 0 0 chr5 11489008 11489047 -141048212 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 672 239 331 3 44 chr5 11489360 11489557 -141047702 + GA-rich Low_complexity Low_complexity 1 188 0 6 672 312 297 18 54 chr5 11489615 11489782 -141047477 + GA-rich Low_complexity Low_complexity 1 161 0 6 672 456 188 42 0 chr5 11489782 11489926 -141047333 + (CAGAGA)n Simple_repeat Simple_repeat 2 151 0 7 672 233 325 60 0 chr5 11489926 11490009 -141047250 - MLT1A0 LTR MaLR -191 174 87 7 672 1392 347 90 35 chr5 11490279 11491404 -141045855 - Lx8 LINE L1 -215 7258 6072 7 672 1720 179 32 20 chr5 11491404 11491809 -141045450 - RMER17C LTR ERVK 0 410 1 7 672 1392 347 90 35 chr5 11491809 11491820 -141045439 - Lx8 LINE L1 -1402 6071 6060 7 672 1461 257 95 43 chr5 11491962 11492111 -141045148 + RMER2 LTR ERV1 3 188 -379 7 672 243 0 0 0 chr5 11492111 11492138 -141045121 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 672 1461 257 95 43 chr5 11492138 11492525 -141044734 + RMER2 LTR ERV1 189 567 0 7 672 21 71 0 0 chr5 11493729 11493771 -141043488 + AT_rich Low_complexity Low_complexity 1 42 0 7 672 645 90 9 18 chr5 11493771 11493884 -141043375 + (TA)n Simple_repeat Simple_repeat 2 113 0 7 672 254 280 27 0 chr5 11493885 11493960 -141043299 + RMER2 LTR ERV1 491 567 0 7 672 210 114 45 0 chr5 11493987 11494031 -141043228 + (TA)n Simple_repeat Simple_repeat 1 46 0 7 672 981 112 0 0 chr5 11494045 11494179 -141043080 + B1_Mm SINE Alu 1 134 -13 7 672 741 118 0 0 chr5 11494208 11494327 -141042932 + (GA)n Simple_repeat Simple_repeat 2 120 0 7 672 758 256 65 27 chr5 11495242 11495506 -141041753 + ORR1D1 LTR MaLR 1 283 -87 7 672 781 275 34 5 chr5 11495544 11495752 -141041507 + ORR1D1 LTR MaLR 158 371 -3 7 672 2009 59 0 4 chr5 11496532 11496786 -141040473 - L1_Mus1 LINE L1 -229 6338 6086 7 672 1840 63 0 4 chr5 11496787 11497025 -141040234 + L1_Mus1 LINE L1 6330 6566 -1 7 672 576 352 25 40 chr5 11497067 11497342 -141039917 + MTEa LTR MaLR 103 373 -6 7 672 1168 221 99 27 chr5 11497343 11497757 -141039502 - Lx9 LINE L1 -28 7616 7173 7 672 22 0 0 0 chr5 11497920 11497942 -141039317 + AT_rich Low_complexity Low_complexity 1 22 0 7 672 261 277 0 12 chr5 11498037 11498121 -141039138 + L1M2 LINE L1 5417 5499 -792 7 672 254 314 23 23 chr5 11498359 11498535 -141038724 + L1M2 LINE L1 5572 5747 -442 7 672 497 80 13 0 chr5 11498640 11498715 -141038544 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 7 672 234 163 0 20 chr5 11499229 11499279 -141037980 + L1_Mur2 LINE L1 4350 4398 -1479 7 672 1369 142 13 0 chr5 11499296 11499535 -141037724 - L1_Mur2 LINE L1 -1237 4640 4399 7 672 2277 200 6 4 chr5 11499533 11500000 -141037259 + L1_Mm LINE L1 4649 5116 -767 7 672 7382 159 21 35 chr5 11500000 11501910 -141035349 + Lx2A1 LINE L1 5120 7000 -8 1 672 693 277 130 145 chr5 11501941 11502388 -141034871 - RMER6B LTR ERVK -21 440 1 2 672 315 136 0 119 chr5 11504522 11504589 -141032670 - HAL1-3A_ME LINE L1 -824 2034 1976 3 672 286 272 68 0 chr5 11507446 11507549 -141029710 + B1_Mur4 SINE Alu 19 128 -22 4 672 363 240 100 8 chr5 11507958 11508088 -141029171 - B3 SINE B2 -2 214 73 5 672 3538 182 53 12 chr5 11508872 11509648 -141027611 - RMER17D2 LTR ERVK 0 809 2 6 672 231 103 0 0 chr5 11510362 11510401 -141026858 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 672 738 81 0 0 chr5 11510585 11510696 -141026563 + (TC)n Simple_repeat Simple_repeat 2 112 0 8 672 447 19 0 0 chr5 11510696 11510747 -141026512 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 672 2784 201 52 46 chr5 11511024 11511924 -141025335 + L1_Mur2 LINE L1 3074 3979 -1898 1 672 206 200 0 32 chr5 11513430 11513492 -141023767 + (TAA)n Simple_repeat Simple_repeat 1 60 0 1 672 466 212 9 0 chr5 11513517 11513630 -141023629 + L1_Mur2 LINE L1 4105 4218 -1659 1 672 1306 209 3 9 chr5 11513632 11513960 -141023299 - ORR1A4-int LTR MaLR -920 1043 718 1 672 685 210 14 203 chr5 11513847 11514128 -141023131 - MT2B LTR ERVL -339 262 35 1 672 2864 206 28 80 chr5 11514014 11514777 -141022482 - ORR1A4-int LTR MaLR -1236 727 5 1 672 914 225 140 78 chr5 11514781 11515089 -141022170 - ORR1A4 LTR MaLR 0 329 3 1 672 1873 168 3 0 chr5 11515095 11515417 -141021842 - ORR1A2 LTR MaLR 0 327 5 1 672 6243 156 48 4 chr5 11515421 11516548 -141020711 - ORR1A2-int LTR MaLR 0 1963 788 1 672 274 254 27 53 chr5 11516538 11516613 -141020646 - RMER6B LTR ERVK -80 381 309 1 672 25 90 0 0 chr5 11516684 11516751 -141020508 + AT_rich Low_complexity Low_complexity 1 67 0 1 672 1782 134 0 0 chr5 11516764 11517040 -141020219 - L1_Mus4 LINE L1 -6 6630 6355 1 672 679 189 111 12 chr5 11517089 11517345 -141019914 - RMER6B LTR ERVK -251 210 1 1 672 22 0 0 0 chr5 11517517 11517539 -141019720 + AT_rich Low_complexity Low_complexity 1 22 0 1 672 1712 196 38 82 chr5 11517570 11517970 -141019289 + RLTR41 LTR ERV1 65 446 0 1 672 758 153 0 68 chr5 11518001 11518134 -141019125 - B2_Mm2 SINE B2 -70 125 2 2 672 419 202 34 0 chr5 11518251 11518340 -141018919 - RLTR19 LTR ERVK -1 498 404 2 672 27 29 0 0 chr5 11518968 11519002 -141018257 + AT_rich Low_complexity Low_complexity 1 34 0 2 672 593 278 161 30 chr5 11520728 11520995 -141016264 + RMER5 LTR ERV1 231 532 -2 2 672 496 209 40 71 chr5 11522115 11522367 -141014892 - RMER17C LTR ERVK -68 342 5 2 672 21 0 0 0 chr5 11522669 11522690 -141014569 + AT_rich Low_complexity Low_complexity 1 21 0 2 672 27749 120 53 47 chr5 11522740 11524073 -141013186 + L1Md_T LINE L1 516 1809 -4074 2 672 5622 85 8 5 chr5 11524073 11524832 -141012427 - L1_Mus1 LINE L1 0 6567 5807 2 672 27749 56 96 1 chr5 11524832 11528225 -141009034 + L1Md_T LINE L1 1810 5585 -298 2 672 8473 30 3 0 chr5 11528225 11529218 -141008041 + L1Md_T LINE L1 5587 6582 0 2 672 269 321 80 29 chr5 11529231 11529369 -141007890 + B1F2 SINE Alu 2 146 -3 2 672 3663 112 33 2 chr5 11529391 11529936 -141007323 + Lx2 LINE L1 6436 6997 0 2 672 11436 129 8 5 chr5 11529958 11532649 -141004610 + L1_Mus3 LINE L1 3923 6619 -19 3 672 3011 29 0 0 chr5 11532649 11532995 -141004264 + ORR1A0 LTR MaLR 1 346 0 3 672 522 0 0 0 chr5 11533022 11533080 -141004179 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 672 966 191 36 0 chr5 11533084 11533335 -141003924 + Lx LINE L1 1368 1627 -4259 3 10 3787 187 163 8 chr5 11533334 11534347 -141002912 + Lx LINE L1 2160 3329 -2557 3 10 7538 160 28 19 chr5 11534334 11537176 -141000083 + Lx LINE L1 3257 6647 -7 3 673 5359 186 29 14 chr5 11537183 11538295 -140998964 + Lx3C LINE L1 5843 6971 -5 3 673 1188 301 82 4 chr5 11538318 11538809 -140998450 + Lx7 LINE L1 6702 7230 -466 3 673 22 35 0 0 chr5 11539045 11539074 -140998185 + AT_rich Low_complexity Low_complexity 1 29 0 3 673 624 339 52 39 chr5 11540016 11540455 -140996804 + Lx8 LINE L1 6253 6697 -776 3 673 4433 152 18 14 chr5 11540516 11541244 -140996015 - RMER19A LTR ERVK -6 731 1 3 673 929 99 38 0 chr5 11541261 11541392 -140995867 + B1_Mus2 SINE Alu 1 136 -11 3 673 933 303 40 60 chr5 11541407 11541848 -140995411 + Lx8 LINE L1 6781 7215 -258 3 673 4043 70 0 4 chr5 11541848 11542353 -140994906 - RLTR1C LTR ERV1 0 503 1 4 673 933 303 40 60 chr5 11542353 11542409 -140994850 + Lx8 LINE L1 7216 7268 -205 3 673 817 228 0 0 chr5 11542538 11542718 -140994541 - Lx8 LINE L1 -924 6549 6370 4 673 309 333 67 29 chr5 11542883 11542988 -140994271 + PB1D7 SINE Alu 11 119 -1 4 673 282 311 71 39 chr5 11543577 11543704 -140993555 - ID_B1 SINE B4 -8 216 86 4 673 395 162 12 0 chr5 11543723 11543803 -140993456 + CT-rich Low_complexity Low_complexity 3 83 0 4 673 21 0 0 0 chr5 11543851 11543872 -140993387 + AT_rich Low_complexity Low_complexity 1 21 0 4 673 387 0 0 0 chr5 11544127 11544170 -140993089 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4 673 504 0 0 0 chr5 11544327 11544383 -140992876 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 673 21 36 0 0 chr5 11546011 11546039 -140991220 + AT_rich Low_complexity Low_complexity 1 28 0 4 673 283 335 65 70 chr5 11546998 11547197 -140990062 - B3A SINE B2 0 198 1 4 673 2135 93 13 6 chr5 11547314 11547628 -140989631 + Lx3_Mus LINE L1 6694 7009 0 5 673 216 129 97 0 chr5 11547763 11547825 -140989434 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 5 673 209 100 50 0 chr5 11547854 11547894 -140989365 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 5 673 205 195 0 0 chr5 11547936 11547977 -140989282 + (TA)n Simple_repeat Simple_repeat 1 41 0 5 673 29 28 0 0 chr5 11548146 11548182 -140989077 + AT_rich Low_complexity Low_complexity 1 36 0 5 673 24 0 0 0 chr5 11548400 11548424 -140988835 + AT_rich Low_complexity Low_complexity 1 24 0 5 673 615 230 7 19 chr5 11548605 11548760 -140988499 - Lx7 LINE L1 -333 7363 7211 5 673 830 268 12 25 chr5 11548768 11549000 -140988259 + Lx7 LINE L1 6811 7040 -656 5 673 1094 70 0 7 chr5 11549000 11549138 -140988121 + B1_Mm SINE Alu 2 139 -8 5 673 189 74 0 0 chr5 11549138 11549165 -140988094 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 673 830 268 12 25 chr5 11549165 11549181 -140988078 + Lx7 LINE L1 7041 7052 -644 5 673 332 192 40 10 chr5 11549435 11549535 -140987724 - L1_Mur3 LINE L1 -4225 1655 1553 6 673 1629 195 105 6 chr5 11549965 11550316 -140986943 + ORR1B1 LTR MaLR 1 386 -8 6 673 334 194 0 89 chr5 11550650 11550729 -140986530 + MT2B LTR ERVL 197 268 -333 6 673 640 160 0 0 chr5 11550660 11550760 -140986499 + B1_Mus2 SINE Alu 48 147 0 6 673 184 158 17 17 chr5 11551314 11551372 -140985887 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 673 2145 205 26 21 chr5 11551450 11552085 -140985174 + Lx6 LINE L1 5278 5919 -1541 6 673 887 292 47 10 chr5 11552096 11552485 -140984774 + Lx6 LINE L1 5990 6417 -633 6 673 23 33 0 0 chr5 11554552 11554582 -140982677 + AT_rich Low_complexity Low_complexity 1 30 0 6 673 340 263 139 7 chr5 11554644 11554846 -140982413 + L1MA5A LINE L1 5802 6029 -271 6 673 227 273 91 0 chr5 11555491 11555579 -140981680 + Lx9 LINE L1 7060 7155 -489 6 673 5022 29 0 0 chr5 11556591 11557185 -140980074 - L1_Mm LINE L1 -968 4915 4322 6 673 3234 45 2 0 chr5 11557185 11557582 -140979677 + L1Md_T LINE L1 6184 6581 -1 7 673 216 0 0 0 chr5 11557609 11557633 -140979626 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 7 673 229 209 176 15 chr5 11557960 11558091 -140979168 - Lx9 LINE L1 -7 7637 7486 7 673 465 250 117 0 chr5 11558159 11558287 -140978972 + Lx9 LINE L1 7244 7386 -258 6 673 263 157 0 38 chr5 11558325 11558378 -140978881 + ORR1B2 LTR MaLR 312 362 -22 7 673 321 256 12 0 chr5 11558381 11558467 -140978792 + ORR1B2-int LTR MaLR 157 243 -1266 7 673 2444 174 116 2 chr5 11558481 11558965 -140978294 - Lx2 LINE L1 -1 6996 6458 7 673 4716 217 80 27 chr5 11558967 11560118 -140977141 + ORR1B2-int LTR MaLR 200 1425 -84 7 673 1148 69 0 0 chr5 11560118 11560262 -140976997 + B1_Mus2 SINE Alu 1 144 -3 7 673 351 0 0 0 chr5 11560262 11560301 -140976958 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 7 673 4716 217 80 27 chr5 11560301 11560392 -140976867 + ORR1B2-int LTR MaLR 1426 1508 -1 7 673 971 194 267 27 chr5 11560392 11560688 -140976571 + ORR1B2 LTR MaLR 1 367 0 7 673 510 46 0 0 chr5 11560701 11560766 -140976493 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 673 7941 57 1 1 chr5 11561643 11562689 -140974570 - L1Md_F2 LINE L1 0 6582 5536 7 673 14011 73 2 2 chr5 11562682 11564582 -140972677 + L1_Mm LINE L1 1892 3791 -2092 7 673 493 297 109 122 chr5 11565859 11566170 -140971089 - MTE2a LTR MaLR -15 364 58 8 673 343 231 0 0 chr5 11566489 11566554 -140970705 + RMER2 LTR ERV1 15 79 -488 8 673 376 282 99 123 chr5 11566552 11566884 -140970375 + RMER2 LTR ERV1 228 551 -16 8 673 21 57 0 0 chr5 11567226 11567261 -140969998 + AT_rich Low_complexity Low_complexity 1 35 0 8 673 2319 169 87 14 chr5 11567749 11568186 -140969073 - Lx4A LINE L1 0 7058 6590 8 673 414 319 62 122 chr5 11568456 11568859 -140968400 + MTE2a LTR MaLR 1 379 0 8 673 2036 106 13 3 chr5 11569100 11569403 -140967856 + L1_Mus3 LINE L1 6331 6636 -2 8 673 205 309 70 30 chr5 11569700 11569800 -140967459 - L2c LINE L2 -5 3382 3279 8 673 246 32 0 0 chr5 11570978 11571009 -140966250 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 8 673 916 218 45 74 chr5 11571025 11571402 -140965857 + RLTR9A LTR ERVK 1 366 -2 8 673 14139 12 0 0 chr5 11571656 11573271 -140963988 + L1Md_A LINE L1 3972 5586 -297 8 673 8659 21 1 0 chr5 11573271 11574266 -140962993 + L1Md_A LINE L1 5587 6582 0 8 673 2681 203 13 9 chr5 11574338 11574866 -140962393 - Lx2A1 LINE L1 -6 7002 6473 9 673 210 364 65 43 chr5 11575561 11575590 -140961669 + ID_B1 SINE B4 84 224 0 9 673 270 352 92 9 chr5 11575590 11575699 -140961560 + B1F2 SINE Alu 32 149 0 9 673 269 361 83 12 chr5 11576757 11576925 -140960334 - FordPrefect DNA Tip100 -174 1509 1330 9 673 296 361 82 18 chr5 11576939 11577159 -140960100 - FordPrefect DNA Tip100 -393 1290 1057 9 673 21 0 0 0 chr5 11577457 11577478 -140959781 + AT_rich Low_complexity Low_complexity 1 21 0 9 673 209 209 0 0 chr5 11577676 11577719 -140959540 + T-rich Low_complexity Low_complexity 3 45 0 9 673 649 332 14 24 chr5 11578940 11579153 -140958106 + B3 SINE B2 6 216 0 9 673 34 72 0 0 chr5 11579197 11579266 -140957993 + AT_rich Low_complexity Low_complexity 1 69 0 9 673 1396 39 79 0 chr5 11579419 11579579 -140957680 + B2_Mm1t SINE B2 1 160 -33 9 673 243 0 0 0 chr5 11579579 11579606 -140957653 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 9 673 1396 39 79 0 chr5 11579606 11579623 -140957636 + B2_Mm1t SINE B2 161 190 -3 9 673 494 305 93 21 chr5 11579657 11579948 -140957311 - Lx8 LINE L1 -453 7020 6701 1 673 427 322 14 7 chr5 11580010 11580154 -140957105 + RSINE1 SINE B4 4 148 -17 1 673 297 299 154 31 chr5 11580234 11580396 -140956863 + B3A SINE B2 1 182 -16 1 673 660 227 0 0 chr5 11580412 11580588 -140956671 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 673 30 27 0 0 chr5 11580590 11580627 -140956632 + AT_rich Low_complexity Low_complexity 1 37 0 1 673 27 87 0 0 chr5 11581875 11581944 -140955315 + AT_rich Low_complexity Low_complexity 1 69 0 1 673 23 78 0 0 chr5 11581969 11582020 -140955239 + AT_rich Low_complexity Low_complexity 1 51 0 1 673 351 0 0 0 chr5 11582218 11582257 -140955002 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 673 282 318 0 53 chr5 11582572 11582761 -140954498 + GA-rich Low_complexity Low_complexity 2 180 0 1 673 328 291 18 54 chr5 11582826 11582993 -140954266 + GA-rich Low_complexity Low_complexity 1 161 0 1 673 498 174 42 0 chr5 11582993 11583137 -140954122 + (CAGAGA)n Simple_repeat Simple_repeat 2 151 0 1 673 248 325 60 0 chr5 11583137 11583220 -140954039 - MLT1A0 LTR MaLR -191 174 87 1 673 1307 353 87 32 chr5 11583482 11584615 -140952644 - Lx8 LINE L1 -207 7266 6072 1 673 1592 206 30 20 chr5 11584615 11585021 -140952238 - RMER17C LTR ERVK 0 410 1 1 673 1307 353 87 32 chr5 11585021 11585032 -140952227 - Lx8 LINE L1 -1402 6071 6060 1 673 1291 251 147 43 chr5 11585174 11585307 -140951952 + RMER2 LTR ERV1 3 186 -381 1 673 198 0 0 0 chr5 11585307 11585329 -140951930 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 673 1291 251 147 43 chr5 11585329 11585707 -140951552 + RMER2 LTR ERV1 187 566 -1 1 673 217 151 19 19 chr5 11586958 11587012 -140950247 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 673 274 269 26 0 chr5 11587012 11587090 -140950169 + RMER2 LTR ERV1 488 567 0 1 673 35 41 0 0 chr5 11587117 11587166 -140950093 + AT_rich Low_complexity Low_complexity 1 49 0 1 673 398 71 0 0 chr5 11587167 11587223 -140950036 + PB1D9 SINE Alu 1 56 -64 1 673 663 230 60 7 chr5 11587513 11587662 -140949597 + ORR1D1 LTR MaLR 1 157 -217 1 673 459 0 0 0 chr5 11587674 11587725 -140949534 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 673 241 183 21 11 chr5 11587751 11587845 -140949414 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 1 673 765 290 34 5 chr5 11587848 11588056 -140949203 + ORR1D1 LTR MaLR 158 371 -3 1 673 2005 63 0 4 chr5 11588835 11589089 -140948170 - L1_Mus1 LINE L1 -229 6338 6086 1 673 1773 80 0 4 chr5 11589089 11589328 -140947931 + L1_Mus1 LINE L1 6329 6566 -1 1 673 511 369 4 39 chr5 11589369 11589600 -140947659 + MTE2b LTR MaLR 103 325 -54 1 673 1114 232 92 31 chr5 11589614 11590059 -140947200 - Lx9 LINE L1 0 7644 7173 1 673 24 53 0 0 chr5 11590208 11590246 -140947013 + AT_rich Low_complexity Low_complexity 1 38 0 1 673 257 324 57 7 chr5 11590285 11590425 -140946834 + L1M2 LINE L1 5353 5499 -792 1 673 244 308 23 23 chr5 11590663 11590839 -140946420 + L1M2 LINE L1 5572 5747 -442 1 673 452 48 16 0 chr5 11590944 11591007 -140946252 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 1 673 287 143 0 0 chr5 11591522 11591571 -140945688 + Lx2A1 LINE L1 4350 4398 -1479 1 673 1345 132 18 0 chr5 11591598 11591825 -140945434 - Lx2A1 LINE L1 -1248 4629 4399 1 673 7935 159 18 30 chr5 11591832 11594203 -140943056 + Lx2A1 LINE L1 4652 7000 -8 1 673 799 243 128 146 chr5 11594241 11594685 -140942574 - RMER6B LTR ERVK -25 436 1 1 673 372 118 0 0 chr5 11596914 11596982 -140940277 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 673 280 272 68 0 chr5 11599813 11599916 -140937343 + B1_Mur4 SINE Alu 19 128 -22 1 673 362 240 100 8 chr5 11600326 11600456 -140936803 - B3 SINE B2 -2 214 73 1 673 3275 177 126 6 chr5 11601238 11601959 -140935300 - RMER17D2 LTR ERVK 0 809 2 1 673 429 66 0 0 chr5 11602672 11602733 -140934526 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 673 288 91 0 0 chr5 11602935 11602979 -140934280 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 673 321 26 0 0 chr5 11602979 11603017 -140934242 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 673 3045 199 51 39 chr5 11603294 11604189 -140933070 + L1_Mur2 LINE L1 3074 3979 -1898 1 673 31 26 0 0 chr5 11605649 11605687 -140931572 + AT_rich Low_complexity Low_complexity 1 38 0 1 673 545 177 9 0 chr5 11605726 11605839 -140931420 + L1_Mur2 LINE L1 4105 4218 -1659 1 673 1325 204 3 9 chr5 11605841 11606167 -140931092 - ORR1A4-int LTR MaLR -920 1043 720 1 673 730 196 14 194 chr5 11606056 11606334 -140930925 - MT2B LTR ERVL -339 262 35 1 673 3022 200 27 66 chr5 11606218 11606962 -140930297 - ORR1A4-int LTR MaLR -1234 729 15 1 673 785 244 115 151 chr5 11606972 11607310 -140929949 - ORR1A4 LTR MaLR -1 328 3 1 673 1863 168 3 0 chr5 11607316 11607638 -140929621 - ORR1A2 LTR MaLR 0 327 5 1 673 6351 152 41 7 chr5 11607642 11608779 -140928480 - ORR1A2-int LTR MaLR 0 1963 788 1 673 265 268 27 53 chr5 11608769 11608844 -140928415 - RMER6B LTR ERVK -80 381 309 1 673 24 91 0 0 chr5 11608917 11608983 -140928276 + AT_rich Low_complexity Low_complexity 1 66 0 1 673 1522 151 66 0 chr5 11608996 11609255 -140928004 - L1_Mus4 LINE L1 -6 6630 6355 1 673 500 214 175 42 chr5 11609303 11609469 -140927790 - RMER6B LTR ERVK -251 210 23 1 673 647 171 57 0 chr5 11609437 11609560 -140927699 - RMER6B LTR ERVK -331 130 1 1 673 22 0 0 0 chr5 11609732 11609754 -140927505 + AT_rich Low_complexity Low_complexity 1 22 0 1 673 1663 199 38 82 chr5 11609785 11610185 -140927074 + RLTR41 LTR ERV1 65 446 0 1 673 755 153 0 68 chr5 11610216 11610349 -140926910 - B2_Mm2 SINE B2 -70 125 2 1 673 376 204 45 0 chr5 11610466 11610554 -140926705 - RLTR19 LTR ERVK -1 498 404 1 673 27 29 0 0 chr5 11611182 11611216 -140926043 + AT_rich Low_complexity Low_complexity 1 34 0 1 673 302 336 86 37 chr5 11612581 11612825 -140924434 + L1MDa LINE L1 960 1215 -5418 1 673 7986 167 36 10 chr5 11612910 11614526 -140922733 + L1_Mur1 LINE L1 3368 5026 -860 1 673 5114 205 27 12 chr5 11614533 11615645 -140921614 + Lx3C LINE L1 5843 6971 -5 1 673 1247 308 80 0 chr5 11615673 11616163 -140921096 + Lx7 LINE L1 6702 7230 -466 1 673 203 81 81 0 chr5 11616270 11616307 -140920952 + T-rich Low_complexity Low_complexity 1 40 0 1 673 22 35 0 0 chr5 11616395 11616424 -140920835 + AT_rich Low_complexity Low_complexity 1 29 0 1 673 180 306 79 30 chr5 11616706 11616807 -140920452 - L4 LINE RTE -630 1399 1294 1 673 609 331 59 59 chr5 11617360 11617803 -140919456 + Lx8 LINE L1 6253 6695 -778 1 673 4374 144 23 14 chr5 11617862 11618592 -140918667 - RMER19A LTR ERVK 0 737 1 1 673 950 91 38 0 chr5 11618609 11618741 -140918518 + B1_Mus2 SINE Alu 1 137 -10 1 673 510 251 77 77 chr5 11618756 11618989 -140918270 + Lx8 LINE L1 6781 7013 -460 1 673 38315 7 0 0 chr5 11618991 11624350 -140912909 + L1Md_A LINE L1 227 5586 -297 1 673 8945 3 0 1 chr5 11624350 11625377 -140911882 + L1Md_A LINE L1 5587 6582 0 1 673 651 333 7 40 chr5 11625377 11625598 -140911661 + Lx8 LINE L1 7000 7215 -258 1 673 3889 83 0 0 chr5 11625598 11626101 -140911158 - RLTR1C LTR ERV1 0 503 1 1 673 651 333 7 40 chr5 11626101 11626157 -140911102 + Lx8 LINE L1 7216 7268 -205 1 673 823 291 16 19 chr5 11626211 11626467 -140910792 - Lx8 LINE L1 -849 6624 6370 1 673 314 333 67 29 chr5 11626641 11626746 -140910513 + PB1D7 SINE Alu 11 119 -1 1 673 240 339 68 38 chr5 11627335 11627467 -140909792 - ID_B1 SINE B4 -8 216 81 1 673 428 150 12 0 chr5 11627481 11627561 -140909698 + CT-rich Low_complexity Low_complexity 3 83 0 1 673 21 0 0 0 chr5 11627608 11627629 -140909630 + AT_rich Low_complexity Low_complexity 1 21 0 1 673 405 0 0 0 chr5 11627887 11627932 -140909327 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 1 673 543 16 0 0 chr5 11628087 11628151 -140909108 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 673 186 71 0 0 chr5 11628569 11628597 -140908662 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 673 21 36 0 0 chr5 11629798 11629826 -140907433 + AT_rich Low_complexity Low_complexity 1 28 0 1 673 276 341 65 70 chr5 11630813 11631012 -140906247 - B3A SINE B2 0 198 1 1 673 1918 122 13 9 chr5 11631129 11631444 -140905815 + Lx3_Mus LINE L1 6694 7009 0 1 673 36 23 0 0 chr5 11631595 11631638 -140905621 + AT_rich Low_complexity Low_complexity 1 43 0 1 673 240 271 16 8 chr5 11631669 11631792 -140905467 + (TA)n Simple_repeat Simple_repeat 1 124 0 1 673 30 69 0 0 chr5 11631939 11631997 -140905262 + AT_rich Low_complexity Low_complexity 1 58 0 1 673 688 224 7 19 chr5 11632419 11632574 -140904685 - Lx7 LINE L1 -333 7363 7211 1 673 787 282 31 18 chr5 11632582 11632781 -140904478 + Lx7 LINE L1 6811 7012 -684 1 673 7097 52 56 0 chr5 11632781 11633690 -140903569 + L1Md_F2 LINE L1 5610 6569 -13 1 673 787 282 31 18 chr5 11633690 11633717 -140903542 + Lx7 LINE L1 7013 7039 -657 1 673 1113 65 0 0 chr5 11633718 11633857 -140903402 + B1_Mm SINE Alu 2 140 -7 1 673 243 0 0 0 chr5 11633857 11633884 -140903375 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 673 355 202 40 10 chr5 11634153 11634253 -140903006 - L1_Mur3 LINE L1 -4225 1655 1553 1 673 226 242 91 0 chr5 11634306 11634372 -140902887 + RMER5 LTR ERV1 463 534 0 1 673 1647 195 106 6 chr5 11634684 11635034 -140902225 + ORR1B1 LTR MaLR 2 386 -8 1 673 3594 30 2 0 chr5 11635096 11635530 -140901729 + L1_Mm LINE L1 3869 4303 -1580 1 673 300 167 29 57 chr5 11635807 11635877 -140901382 + MT2B LTR ERVL 197 264 -337 1 673 550 140 0 57 chr5 11635817 11635923 -140901336 + B1_Mus2 SINE Alu 48 147 0 1 673 240 200 0 0 chr5 11635923 11635978 -140901281 + A-rich Low_complexity Low_complexity 1 55 0 1 673 253 231 33 11 chr5 11636460 11636552 -140900707 + (TA)n Simple_repeat Simple_repeat 1 94 0 1 673 2327 215 22 15 chr5 11636630 11637265 -140899994 + Lx5 LINE L1 5278 5922 -1128 1 673 926 304 35 8 chr5 11637276 11637663 -140899596 + Lx5 LINE L1 5990 6416 -634 1 673 23 33 0 0 chr5 11639723 11639753 -140897506 + AT_rich Low_complexity Low_complexity 1 30 0 1 673 381 263 130 11 chr5 11639799 11640013 -140897246 + L1MA8 LINE L1 5786 6012 -177 1 673 4904 32 3 0 chr5 11641762 11642354 -140894905 - L1_Mm LINE L1 -968 4915 4322 1 673 3281 38 2 0 chr5 11642354 11642751 -140894508 + L1Md_T LINE L1 6184 6581 -1 1 673 216 0 0 0 chr5 11642778 11642802 -140894457 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 673 229 209 176 15 chr5 11643129 11643260 -140893999 - Lx9 LINE L1 -7 7637 7486 1 673 465 250 117 0 chr5 11643328 11643456 -140893803 + Lx9 LINE L1 7244 7386 -258 1 673 263 157 0 38 chr5 11643494 11643547 -140893712 + ORR1B2 LTR MaLR 312 362 -22 1 673 363 233 12 0 chr5 11643550 11643636 -140893623 + ORR1B2-int LTR MaLR 157 243 -1266 1 673 2452 174 116 2 chr5 11643650 11644134 -140893125 - Lx2 LINE L1 -1 6996 6458 1 673 4694 219 82 22 chr5 11644136 11645279 -140891980 + ORR1B2-int LTR MaLR 200 1425 -84 1 673 1124 76 0 0 chr5 11645279 11645423 -140891836 + B1_Mus2 SINE Alu 1 144 -3 2 673 315 0 0 0 chr5 11645423 11645458 -140891801 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 673 4694 219 82 22 chr5 11645458 11645549 -140891710 + ORR1B2-int LTR MaLR 1426 1508 -1 1 673 971 194 267 27 chr5 11645549 11645845 -140891414 + ORR1B2 LTR MaLR 1 367 0 1 673 348 64 0 0 chr5 11645858 11645905 -140891354 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 673 7939 57 2 0 chr5 11646782 11647827 -140889432 - L1Md_F2 LINE L1 0 6582 5536 2 673 13943 74 1 5 chr5 11647820 11648861 -140888398 + L1_Mm LINE L1 1892 2933 -2950 2 673 3398 20 2 10 chr5 11648861 11649260 -140887999 + MTA_Mm LTR MaLR 1 396 0 2 673 9287 26 2 2 chr5 11649260 11650358 -140886901 + MTA_Mm-int LTR MaLR 1 1098 0 2 673 3398 20 2 10 chr5 11650358 11650757 -140886502 + MTA_Mm LTR MaLR 1 396 0 2 673 13943 74 1 5 chr5 11650757 11651621 -140885638 + L1_Mm LINE L1 2934 3789 -2094 2 673 493 297 109 122 chr5 11652897 11653208 -140884051 - MTE2a LTR MaLR -15 364 58 2 673 343 231 0 0 chr5 11653526 11653591 -140883668 + RMER2 LTR ERV1 15 79 -488 2 673 367 285 99 123 chr5 11653589 11653921 -140883338 + RMER2 LTR ERV1 228 551 -16 2 673 21 57 0 0 chr5 11654263 11654298 -140882961 + AT_rich Low_complexity Low_complexity 1 35 0 2 673 206 163 23 0 chr5 11654746 11654789 -140882470 + T-rich Low_complexity Low_complexity 3 46 0 2 673 2278 174 87 14 chr5 11654791 11655228 -140882031 - Lx4A LINE L1 0 7058 6590 2 673 389 322 62 122 chr5 11655498 11655901 -140881358 + MTE2a LTR MaLR 1 379 0 2 673 2036 106 13 3 chr5 11656142 11656445 -140880814 + L1_Mus3 LINE L1 6331 6636 -2 2 673 205 309 70 30 chr5 11656742 11656842 -140880417 - L2c LINE L2 -5 3382 3279 2 673 246 32 0 0 chr5 11658020 11658051 -140879208 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 2 673 911 218 45 74 chr5 11658067 11658444 -140878815 + RLTR9A LTR ERVK 1 366 -2 2 673 14108 13 0 0 chr5 11658698 11660313 -140876946 + L1Md_A LINE L1 3972 5586 -297 2 673 8662 22 0 0 chr5 11660313 11661308 -140875951 + L1Md_A LINE L1 5587 6581 -1 2 673 2663 203 13 9 chr5 11661380 11661908 -140875351 - Lx2A1 LINE L1 -6 7002 6473 2 673 360 0 0 0 chr5 11662482 11662522 -140874737 + (T)n Simple_repeat Simple_repeat 1 40 0 2 673 210 364 65 43 chr5 11662621 11662650 -140874609 + ID_B1 SINE B4 84 224 0 2 673 270 352 92 9 chr5 11662650 11662759 -140874500 + B1F2 SINE Alu 32 149 0 2 673 257 368 83 12 chr5 11663816 11663984 -140873275 - FordPrefect DNA Tip100 -174 1509 1330 2 673 296 361 82 18 chr5 11663998 11664218 -140873041 - FordPrefect DNA Tip100 -393 1290 1057 2 673 21 0 0 0 chr5 11664516 11664537 -140872722 + AT_rich Low_complexity Low_complexity 1 21 0 2 673 209 209 0 0 chr5 11664735 11664778 -140872481 + T-rich Low_complexity Low_complexity 3 45 0 2 674 649 332 14 24 chr5 11665999 11666212 -140871047 + B3 SINE B2 6 216 0 2 674 34 72 0 0 chr5 11666256 11666325 -140870934 + AT_rich Low_complexity Low_complexity 1 69 0 2 674 1610 31 0 20 chr5 11666478 11666673 -140870586 + B2_Mm1t SINE B2 1 191 -2 2 674 494 305 93 21 chr5 11666707 11666998 -140870261 - Lx8 LINE L1 -453 7020 6701 2 674 427 322 14 7 chr5 11667060 11667204 -140870055 + RSINE1 SINE B4 4 148 -17 2 674 319 293 154 31 chr5 11667284 11667446 -140869813 + B3A SINE B2 1 182 -16 2 674 732 214 0 0 chr5 11667465 11667643 -140869616 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 674 30 27 0 0 chr5 11667644 11667681 -140869578 + AT_rich Low_complexity Low_complexity 1 37 0 2 674 27 87 0 0 chr5 11668933 11669002 -140868257 + AT_rich Low_complexity Low_complexity 1 69 0 2 674 23 78 0 0 chr5 11669027 11669078 -140868181 + AT_rich Low_complexity Low_complexity 1 51 0 2 674 351 0 0 0 chr5 11669276 11669315 -140867944 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 674 282 318 0 53 chr5 11669630 11669819 -140867440 + GA-rich Low_complexity Low_complexity 2 180 0 2 674 330 309 18 24 chr5 11669884 11670050 -140867209 + GA-rich Low_complexity Low_complexity 1 165 0 2 674 519 167 42 0 chr5 11670050 11670194 -140867065 + (CAGAGA)n Simple_repeat Simple_repeat 2 151 0 2 674 248 325 60 0 chr5 11670194 11670277 -140866982 - MLT1A0 LTR MaLR -191 174 87 2 674 1304 351 87 32 chr5 11670547 11671672 -140865587 - Lx8 LINE L1 -215 7258 6072 2 674 1608 208 27 17 chr5 11671672 11672078 -140865181 - RMER17C LTR ERVK 0 410 1 2 674 1304 351 87 32 chr5 11672078 11672089 -140865170 - Lx8 LINE L1 -1402 6071 6060 2 674 1368 243 149 43 chr5 11672231 11672363 -140864896 + RMER2 LTR ERV1 3 186 -381 2 674 234 0 0 0 chr5 11672363 11672389 -140864870 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 674 1368 243 149 43 chr5 11672389 11672767 -140864492 + RMER2 LTR ERV1 187 566 -1 2 674 217 151 19 19 chr5 11674019 11674073 -140863186 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 674 274 269 26 0 chr5 11674073 11674151 -140863108 + RMER2 LTR ERV1 488 567 0 2 674 35 41 0 0 chr5 11674178 11674227 -140863032 + AT_rich Low_complexity Low_complexity 1 49 0 2 674 398 71 0 0 chr5 11674228 11674284 -140862975 + PB1D9 SINE Alu 1 56 -64 2 674 663 230 60 7 chr5 11674574 11674723 -140862536 + ORR1D1 LTR MaLR 1 157 -217 2 674 423 0 0 0 chr5 11674735 11674782 -140862477 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 674 241 183 21 11 chr5 11674808 11674902 -140862357 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 2 674 767 280 34 5 chr5 11674905 11675113 -140862146 + ORR1D1 LTR MaLR 158 371 -3 2 674 2005 63 0 4 chr5 11675892 11676146 -140861113 - L1_Mus1 LINE L1 -229 6338 6086 2 674 1798 71 0 4 chr5 11676146 11676385 -140860874 + L1_Mus1 LINE L1 6329 6566 -1 2 674 546 360 25 40 chr5 11676425 11676700 -140860559 + MTEa LTR MaLR 103 373 -6 2 674 1137 226 99 27 chr5 11676701 11677115 -140860144 - Lx9 LINE L1 -28 7616 7173 2 674 24 53 0 0 chr5 11677265 11677303 -140859956 + AT_rich Low_complexity Low_complexity 1 38 0 2 674 248 289 0 12 chr5 11677398 11677482 -140859777 + L1M2 LINE L1 5417 5499 -792 2 674 244 308 23 23 chr5 11677720 11677896 -140859363 + L1M2 LINE L1 5572 5747 -442 2 674 344 59 20 0 chr5 11678001 11678052 -140859207 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 2 674 287 143 0 0 chr5 11678566 11678615 -140858644 + Lx2A1 LINE L1 4350 4398 -1479 2 674 1295 141 18 0 chr5 11678642 11678869 -140858390 - Lx2A1 LINE L1 -1248 4629 4399 2 674 8003 160 17 30 chr5 11678876 11681247 -140856012 + Lx2A1 LINE L1 4652 7000 -8 2 674 750 245 128 150 chr5 11681285 11681731 -140855528 - RMER6B LTR ERVK -25 436 1 2 674 388 169 0 0 chr5 11683945 11684004 -140853255 - HAL1-3A_ME LINE L1 -824 2034 1976 2 674 226 320 0 0 chr5 11684004 11684079 -140853180 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 674 264 282 68 0 chr5 11686885 11686988 -140850271 + B1_Mur4 SINE Alu 19 128 -22 2 674 353 248 100 8 chr5 11687394 11687524 -140849735 - B3 SINE B2 -2 214 73 2 674 3537 176 60 13 chr5 11688300 11689072 -140848187 - RMER17D2 LTR ERVK 0 809 2 2 674 249 98 0 0 chr5 11689786 11689827 -140847432 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 674 642 96 0 0 chr5 11690011 11690115 -140847144 + (TC)n Simple_repeat Simple_repeat 1 104 0 2 674 483 18 0 0 chr5 11690115 11690171 -140847088 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 674 3040 206 53 38 chr5 11690448 11691341 -140845918 + L1_Mur2 LINE L1 3074 3979 -1898 2 674 45 0 0 0 chr5 11692844 11692889 -140844370 + AT_rich Low_complexity Low_complexity 1 45 0 2 674 491 212 9 0 chr5 11692928 11693041 -140844218 + L1_Mur2 LINE L1 4105 4218 -1659 2 674 1326 203 3 9 chr5 11693043 11693371 -140843888 - ORR1A4-int LTR MaLR -920 1043 718 2 674 690 210 14 197 chr5 11693258 11693537 -140843722 - MT2B LTR ERVL -339 262 35 2 674 2825 204 30 83 chr5 11693423 11694186 -140843073 - ORR1A4-int LTR MaLR -1236 727 5 2 674 939 231 133 74 chr5 11694190 11694499 -140842760 - ORR1A4 LTR MaLR 0 329 3 2 674 1870 168 3 0 chr5 11694505 11694827 -140842432 - ORR1A2 LTR MaLR 0 327 5 2 674 6336 152 41 7 chr5 11694831 11695968 -140841291 - ORR1A2-int LTR MaLR 0 1963 788 2 674 274 254 27 53 chr5 11695958 11696033 -140841226 - RMER6B LTR ERVK -80 381 309 2 674 26 88 0 0 chr5 11696105 11696173 -140841086 + AT_rich Low_complexity Low_complexity 1 68 0 2 674 1773 138 0 0 chr5 11696186 11696462 -140840797 - L1_Mus4 LINE L1 -6 6630 6355 2 674 674 188 107 15 chr5 11696511 11696769 -140840490 - RMER6B LTR ERVK -251 210 1 2 674 22 0 0 0 chr5 11696941 11696963 -140840296 + AT_rich Low_complexity Low_complexity 1 22 0 2 674 1644 202 38 82 chr5 11696994 11697394 -140839865 + RLTR41 LTR ERV1 65 446 0 2 674 758 167 27 61 chr5 11697411 11697558 -140839701 - B2_Mm2 SINE B2 -52 143 2 2 674 413 202 34 0 chr5 11697675 11697764 -140839495 - RLTR19 LTR ERVK -1 498 404 2 674 27 29 0 0 chr5 11698392 11698426 -140838833 + AT_rich Low_complexity Low_complexity 1 34 0 2 674 7913 168 40 6 chr5 11700122 11701725 -140835534 + L1_Mur1 LINE L1 3368 5026 -860 2 674 5097 201 30 12 chr5 11701732 11702841 -140834418 + Lx3C LINE L1 5843 6971 -5 2 674 1246 308 77 6 chr5 11702869 11703363 -140833896 + Lx7 LINE L1 6702 7230 -466 2 674 203 81 81 0 chr5 11703471 11703508 -140833751 + T-rich Low_complexity Low_complexity 1 40 0 2 674 22 35 0 0 chr5 11703596 11703625 -140833634 + AT_rich Low_complexity Low_complexity 1 29 0 2 674 608 345 52 52 chr5 11704560 11705003 -140832256 + Lx8 LINE L1 6253 6695 -778 2 674 4435 142 23 14 chr5 11705062 11705792 -140831467 - RMER19A LTR ERVK 0 737 1 2 674 968 91 38 0 chr5 11705809 11705941 -140831318 + B1_Mus2 SINE Alu 1 137 -10 2 674 1008 308 42 60 chr5 11705956 11706396 -140830863 + Lx8 LINE L1 6781 7215 -258 2 674 3829 73 18 4 chr5 11706396 11706892 -140830367 - RLTR1C LTR ERV1 0 503 1 2 674 1008 308 42 60 chr5 11706892 11706955 -140830304 + Lx8 LINE L1 7216 7275 -198 2 674 854 275 16 39 chr5 11707002 11707259 -140830000 - Lx8 LINE L1 -849 6624 6374 2 674 295 333 67 29 chr5 11707438 11707543 -140829716 + PB1D7 SINE Alu 11 119 -1 2 674 303 309 69 38 chr5 11708133 11708264 -140828995 - ID_B1 SINE B4 -9 215 81 2 674 426 151 0 0 chr5 11708281 11708354 -140828905 + C-rich Low_complexity Low_complexity 3 75 0 2 674 474 18 0 0 chr5 11708684 11708739 -140828520 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2 674 396 0 0 0 chr5 11708896 11708940 -140828319 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 674 21 36 0 0 chr5 11710570 11710598 -140826661 + AT_rich Low_complexity Low_complexity 1 28 0 2 674 276 341 65 70 chr5 11711574 11711773 -140825486 - B3A SINE B2 0 198 1 2 674 2114 96 9 6 chr5 11711890 11712205 -140825054 + Lx3_Mus LINE L1 6694 7009 0 2 674 41 21 0 0 chr5 11712355 11712403 -140824856 + AT_rich Low_complexity Low_complexity 1 48 0 2 674 221 111 89 0 chr5 11712431 11712476 -140824783 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 2 674 8211 37 0 0 chr5 11712517 11714015 -140823244 - L1Md_A LINE L1 -1 6581 5084 2 674 24 0 0 0 chr5 11714019 11714043 -140823216 + AT_rich Low_complexity Low_complexity 1 24 0 3 674 29 28 0 0 chr5 11714218 11714254 -140823005 + AT_rich Low_complexity Low_complexity 1 36 0 3 674 703 217 7 19 chr5 11714678 11714833 -140822426 - Lx7 LINE L1 -333 7363 7211 3 674 782 266 55 25 chr5 11714841 11715063 -140822196 + Lx7 LINE L1 6811 7040 -656 3 674 1109 63 0 7 chr5 11715063 11715201 -140822058 + B1_Mm SINE Alu 2 139 -8 3 674 189 74 0 0 chr5 11715201 11715228 -140822031 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 674 782 266 55 25 chr5 11715228 11715244 -140822015 + Lx7 LINE L1 7041 7052 -644 3 674 405 172 40 10 chr5 11715499 11715599 -140821660 - L1_Mur3 LINE L1 -4225 1655 1553 3 674 505 144 164 0 chr5 11716029 11716133 -140821126 + ORR1B1 LTR MaLR 1 121 -273 3 674 1061 218 82 8 chr5 11716250 11716495 -140820764 + ORR1B1 LTR MaLR 124 386 -8 3 674 367 153 0 89 chr5 11716828 11716907 -140820352 + MT2B LTR ERVL 197 268 -333 3 674 685 120 0 0 chr5 11716838 11716938 -140820321 + B1_Mus2 SINE Alu 48 147 0 3 674 220 148 16 16 chr5 11717498 11717560 -140819699 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 674 2304 216 24 19 chr5 11717638 11718274 -140818985 + Lx5 LINE L1 5278 5922 -1128 3 674 981 304 58 19 chr5 11718304 11718680 -140818579 + Lx5 LINE L1 6027 6417 -633 3 674 419 282 64 14 chr5 11720822 11721093 -140816166 + L1MA5A LINE L1 5794 6086 -205 3 674 27 49 0 0 chr5 11721345 11721386 -140815873 + AT_rich Low_complexity Low_complexity 1 41 0 3 674 264 347 66 0 chr5 11721675 11721796 -140815463 + Lx9 LINE L1 7060 7188 -456 3 674 3637 48 5 0 chr5 11722383 11722817 -140814442 - RLTR10C LTR ERVK 0 436 1 3 674 7676 36 0 1 chr5 11722817 11723754 -140813505 - MMERVK10C-int LTR ERVK 0 7581 6646 3 674 39682 43 0 1 chr5 11723740 11728683 -140808576 - MMERVK10C-int LTR ERVK -1771 5810 870 3 674 1343 89 38 5 chr5 11728681 11728983 -140808276 - MMERVK10C-int LTR ERVK -7182 399 1 3 674 2461 49 14 0 chr5 11728983 11729481 -140807778 - RLTR10C LTR ERVK 0 436 1 3 674 434 242 117 0 chr5 11730120 11730248 -140807011 + Lx9 LINE L1 7244 7386 -258 3 674 426 116 0 5 chr5 11730286 11730361 -140806898 + ORR1B2 LTR MaLR 306 394 0 3 674 768 211 191 0 chr5 11730361 11730565 -140806694 + ORR1B2-int LTR MaLR 1 243 -1266 3 674 2542 171 114 4 chr5 11730579 11731097 -140806162 - Lx2 LINE L1 -1 6996 6422 3 674 229 103 17 33 chr5 11731126 11731186 -140806073 + T-rich Low_complexity Low_complexity 2 60 0 3 674 4642 218 64 31 chr5 11731186 11732280 -140804979 + ORR1B2-int LTR MaLR 270 1403 -106 3 674 1091 95 0 0 chr5 11732280 11732427 -140804832 + B1_Mus2 SINE Alu 1 147 0 3 674 4642 218 64 31 chr5 11732427 11732440 -140804819 + ORR1B2-int LTR MaLR 1404 1417 -92 3 674 396 0 0 0 chr5 11732440 11732484 -140804775 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 3 674 4642 218 64 31 chr5 11732484 11732575 -140804684 + ORR1B2-int LTR MaLR 1418 1508 -1 3 674 1029 188 267 27 chr5 11732575 11732871 -140804388 + ORR1B2 LTR MaLR 1 367 0 3 674 261 57 0 0 chr5 11732882 11732917 -140804342 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 674 35100 27 1 7 chr5 11735108 11740127 -140797132 + L1Md_T LINE L1 606 5586 -297 3 674 8362 37 1 0 chr5 11740127 11741122 -140796137 + L1Md_T LINE L1 5587 6582 0 3 674 297 109 0 0 chr5 11741131 11741177 -140796082 + (A)n Simple_repeat Simple_repeat 1 46 0 3 674 352 284 19 10 chr5 11741414 11741517 -140795742 - MTE2a LTR MaLR -218 161 58 3 674 275 308 26 0 chr5 11741517 11741595 -140795664 - MTE2a LTR MaLR -281 98 19 3 674 504 266 64 103 chr5 11741836 11742248 -140795011 + RMER2 LTR ERV1 15 551 -16 3 674 33 56 0 0 chr5 11742589 11742643 -140794616 + AT_rich Low_complexity Low_complexity 1 54 0 3 674 21 0 0 0 chr5 11743094 11743115 -140794144 + AT_rich Low_complexity Low_complexity 1 21 0 3 674 1941 169 64 89 chr5 11743115 11743596 -140793663 - Lx4A LINE L1 0 7058 6590 3 674 452 333 57 53 chr5 11743874 11744265 -140792994 + MTEa LTR MaLR 10 368 -11 3 674 2074 109 10 3 chr5 11744513 11744817 -140792442 + L1_Mus3 LINE L1 6331 6636 -2 3 674 219 286 79 0 chr5 11745146 11745209 -140792050 - L2c LINE L2 -33 3354 3287 3 674 190 0 67 0 chr5 11746392 11746422 -140790837 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 3 674 1105 204 49 73 chr5 11746438 11746782 -140790477 + RLTR9A LTR ERVK 1 336 -32 3 674 2627 210 13 9 chr5 11747042 11747570 -140789689 - Lx2A1 LINE L1 -6 7002 6473 3 674 207 0 0 0 chr5 11748148 11748171 -140789088 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3 674 213 364 65 43 chr5 11748268 11748297 -140788962 + ID_B1 SINE B4 84 224 0 3 674 274 352 92 9 chr5 11748297 11748406 -140788853 + B1F2 SINE Alu 32 149 0 3 674 189 0 0 0 chr5 11748611 11748632 -140788627 + (A)n Simple_repeat Simple_repeat 1 21 0 3 674 230 370 89 18 chr5 11749482 11749650 -140787609 - FordPrefect DNA Tip100 -174 1509 1330 3 674 263 361 82 18 chr5 11749664 11749884 -140787375 - FordPrefect DNA Tip100 -393 1290 1057 3 674 209 209 0 0 chr5 11750404 11750447 -140786812 + T-rich Low_complexity Low_complexity 3 45 0 3 674 487 340 14 9 chr5 11751665 11751876 -140785383 + B3 SINE B2 5 216 0 3 674 33 73 0 0 chr5 11751920 11751988 -140785271 + AT_rich Low_complexity Low_complexity 1 68 0 3 674 389 327 7 27 chr5 11752163 11752356 -140784903 - Lx8 LINE L1 -453 7020 6825 3 674 213 256 0 0 chr5 11752516 11752555 -140784704 + RSINE1 SINE B4 4 42 -123 3 674 181 329 53 0 chr5 11752922 11752998 -140784261 - MIR SINE MIR -91 171 92 3 674 21 71 0 0 chr5 11753646 11753688 -140783571 + AT_rich Low_complexity Low_complexity 1 42 0 3 674 22 0 0 0 chr5 11753769 11753791 -140783468 + AT_rich Low_complexity Low_complexity 1 22 0 3 674 234 62 0 0 chr5 11753989 11754021 -140783238 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 674 260 352 0 32 chr5 11754333 11754518 -140782741 + GA-rich Low_complexity Low_complexity 2 180 0 3 674 334 318 8 45 chr5 11754584 11754804 -140782455 + GA-rich Low_complexity Low_complexity 1 211 0 3 674 791 162 0 11 chr5 11754817 11754998 -140782261 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 3 674 235 325 60 0 chr5 11755035 11755118 -140782141 - MLT1A0 LTR MaLR -191 174 87 3 674 934 353 93 40 chr5 11755388 11756487 -140780772 - Lx8 LINE L1 -215 7258 6102 3 674 1726 186 30 20 chr5 11756509 11756915 -140780344 - RMER17C LTR ERVK 0 410 1 3 674 1460 241 112 42 chr5 11757068 11757208 -140780051 + RMER2 LTR ERV1 3 183 -384 3 674 279 0 0 0 chr5 11757208 11757239 -140780020 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 674 1460 241 112 42 chr5 11757239 11757626 -140779633 + RMER2 LTR ERV1 184 566 -1 3 674 21 71 0 0 chr5 11758826 11758868 -140778391 + AT_rich Low_complexity Low_complexity 1 42 0 3 674 603 87 9 19 chr5 11758868 11758974 -140778285 + (TA)n Simple_repeat Simple_repeat 1 105 0 3 674 255 280 27 0 chr5 11758974 11759049 -140778210 + RMER2 LTR ERV1 491 567 0 3 674 39 38 0 0 chr5 11759076 11759129 -140778130 + AT_rich Low_complexity Low_complexity 1 53 0 3 674 956 119 0 0 chr5 11759130 11759264 -140777995 + B1_Mm SINE Alu 1 134 -13 3 674 750 113 0 0 chr5 11759285 11759400 -140777859 + (GA)n Simple_repeat Simple_repeat 2 116 0 3 674 12636 22 3 0 chr5 11760030 11761584 -140775675 + L1Md_T LINE L1 4029 5586 -297 3 674 8427 31 2 0 chr5 11761584 11762607 -140774652 + L1Md_T LINE L1 5587 6582 0 3 674 724 232 58 0 chr5 11762903 11763058 -140774201 + ORR1D1 LTR MaLR 1 164 -210 3 674 423 0 0 0 chr5 11763063 11763110 -140774149 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 674 241 183 21 11 chr5 11763138 11763232 -140774027 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 3 674 777 275 34 5 chr5 11763235 11763443 -140773816 + ORR1D1 LTR MaLR 158 371 -3 3 674 1226 48 0 0 chr5 11763477 11763624 -140773635 - B1_Mus2 SINE Alu 0 147 1 3 674 1938 55 0 4 chr5 11764397 11764651 -140772608 - L1_Mus1 LINE L1 -229 6338 6086 3 674 1855 67 0 4 chr5 11764651 11764890 -140772369 + L1_Mus1 LINE L1 6329 6566 -1 3 674 587 356 4 39 chr5 11764931 11765162 -140772097 + MTE2b LTR MaLR 103 325 -54 3 674 1028 223 102 35 chr5 11765188 11765620 -140771639 - Lx9 LINE L1 -11 7633 7173 3 674 22 56 0 0 chr5 11765768 11765804 -140771455 + AT_rich Low_complexity Low_complexity 1 36 0 3 674 239 277 0 12 chr5 11765898 11765982 -140771277 + L1M2 LINE L1 5417 5499 -792 3 674 247 312 26 7 chr5 11766220 11766375 -140770884 + L1M2 LINE L1 5572 5729 -562 3 674 431 63 16 0 chr5 11766501 11766564 -140770695 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 3 674 247 149 0 0 chr5 11767080 11767127 -140770132 + Lx2A1 LINE L1 4352 4398 -1479 3 674 1298 142 13 0 chr5 11767144 11767383 -140769876 - Lx2A1 LINE L1 -1237 4640 4399 3 674 7342 171 18 30 chr5 11767381 11769760 -140767499 + Lx2A1 LINE L1 4652 7000 -8 3 674 694 278 132 143 chr5 11769799 11770240 -140767019 - RMER6B LTR ERVK -25 436 1 3 674 480 100 0 0 chr5 11772417 11772497 -140764762 + (TG)n Simple_repeat Simple_repeat 1 80 0 3 674 269 282 68 0 chr5 11775329 11775432 -140761827 + B1_Mur4 SINE Alu 19 128 -22 3 674 363 240 100 8 chr5 11775842 11775972 -140761287 - B3 SINE B2 -2 214 73 3 674 3543 192 50 4 chr5 11776754 11777526 -140759733 - RMER17D2 LTR ERVK 0 809 2 3 674 249 98 0 0 chr5 11778240 11778281 -140758978 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 674 220 176 39 0 chr5 11778441 11778492 -140758767 + (TCTG)n Simple_repeat Simple_repeat 4 56 0 3 674 540 45 0 0 chr5 11778493 11778560 -140758699 + (TC)n Simple_repeat Simple_repeat 2 68 0 3 674 516 32 0 0 chr5 11778560 11778621 -140758638 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 674 3027 204 47 40 chr5 11778904 11779797 -140757462 + L1_Mur2 LINE L1 3081 3979 -1898 3 674 33 25 0 0 chr5 11781308 11781348 -140755911 + AT_rich Low_complexity Low_complexity 1 40 0 3 674 514 153 10 0 chr5 11781387 11781485 -140755774 + L1_Mur2 LINE L1 4105 4203 -1674 3 674 4055 205 25 91 chr5 11781485 11782612 -140754647 - ORR1A4-int LTR MaLR -896 1067 15 3 674 962 240 126 68 chr5 11782625 11782934 -140754325 - ORR1A4 LTR MaLR 0 329 3 3 674 1859 171 3 0 chr5 11782940 11783262 -140753997 - ORR1A2 LTR MaLR 0 327 5 3 674 6261 158 41 5 chr5 11783266 11784401 -140752858 - ORR1A2-int LTR MaLR 0 1963 788 3 674 235 273 98 43 chr5 11784391 11784483 -140752776 - RMER6B LTR ERVK -80 381 285 3 674 33 73 0 0 chr5 11784539 11784607 -140752652 + AT_rich Low_complexity Low_complexity 1 68 0 3 674 1874 120 0 0 chr5 11784620 11784896 -140752363 - L1_Mus4 LINE L1 -6 6630 6355 3 674 654 209 108 12 chr5 11784944 11785201 -140752058 - RMER6B LTR ERVK -251 210 1 3 674 22 0 0 0 chr5 11785373 11785395 -140751864 + AT_rich Low_complexity Low_complexity 1 22 0 3 674 1676 191 40 83 chr5 11785426 11785825 -140751434 + RLTR41 LTR ERV1 65 446 0 3 674 773 145 0 68 chr5 11785856 11785989 -140751270 - B2_Mm2 SINE B2 -70 125 2 3 674 413 202 34 0 chr5 11786106 11786195 -140751064 - RLTR19 LTR ERVK -1 498 404 3 674 27 29 0 0 chr5 11786825 11786859 -140750400 + AT_rich Low_complexity Low_complexity 1 34 0 3 674 8023 166 38 6 chr5 11788556 11790164 -140747095 + L1_Mur1 LINE L1 3368 5026 -860 3 674 5180 204 27 11 chr5 11790171 11791282 -140745977 + Lx3C LINE L1 5843 6971 -5 3 674 1224 305 84 2 chr5 11791310 11791799 -140745460 + Lx7 LINE L1 6702 7230 -466 3 674 203 81 81 0 chr5 11791907 11791944 -140745315 + T-rich Low_complexity Low_complexity 1 40 0 3 674 22 35 0 0 chr5 11792032 11792061 -140745198 + AT_rich Low_complexity Low_complexity 1 29 0 4 674 609 331 59 59 chr5 11792997 11793440 -140743819 + Lx8 LINE L1 6253 6695 -778 4 674 4356 147 23 14 chr5 11793499 11794229 -140743030 - RMER19A LTR ERVK 0 737 1 4 674 960 85 39 0 chr5 11794246 11794376 -140742883 + B1_Mus2 SINE Alu 1 135 -12 4 674 1063 306 40 58 chr5 11794393 11794833 -140742426 + Lx8 LINE L1 6781 7215 -258 4 674 4021 74 0 0 chr5 11794833 11795336 -140741923 - RLTR1C LTR ERV1 0 503 1 4 674 1063 306 40 58 chr5 11795336 11795392 -140741867 + Lx8 LINE L1 7216 7268 -205 4 674 897 269 54 12 chr5 11795446 11795687 -140741572 - Lx8 LINE L1 -849 6624 6374 4 674 306 333 67 29 chr5 11795856 11795961 -140741298 + PB1D7 SINE Alu 11 119 -1 4 675 272 306 93 39 chr5 11796548 11796677 -140740582 - ID_B1 SINE B4 -8 216 81 4 675 353 149 15 0 chr5 11796690 11796757 -140740502 + C-rich Low_complexity Low_complexity 3 70 0 4 675 459 0 0 0 chr5 11797078 11797129 -140740130 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 4 675 351 0 0 0 chr5 11797285 11797324 -140739935 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 675 5939 16 0 0 chr5 11798229 11798911 -140738348 + L1Md_T LINE L1 4905 5586 -297 4 675 8900 7 0 9 chr5 11798911 11799934 -140737325 + L1Md_T LINE L1 5587 6582 0 4 675 21 36 0 0 chr5 11800662 11800690 -140736569 + AT_rich Low_complexity Low_complexity 1 28 0 4 675 276 341 65 70 chr5 11801649 11801848 -140735411 - B3A SINE B2 0 198 1 4 675 2097 96 13 6 chr5 11801965 11802279 -140734980 + Lx3_Mus LINE L1 6694 7009 0 4 675 216 129 97 0 chr5 11802417 11802479 -140734780 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 4 675 209 100 50 0 chr5 11802508 11802548 -140734711 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 4 675 205 195 0 0 chr5 11802590 11802631 -140734628 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 675 29 28 0 0 chr5 11802800 11802836 -140734423 + AT_rich Low_complexity Low_complexity 1 36 0 4 675 24 0 0 0 chr5 11803054 11803078 -140734181 + AT_rich Low_complexity Low_complexity 1 24 0 4 675 664 230 7 19 chr5 11803259 11803414 -140733845 - Lx7 LINE L1 -333 7363 7211 4 675 895 272 12 25 chr5 11803422 11803654 -140733605 + Lx7 LINE L1 6811 7040 -656 4 675 1109 63 0 7 chr5 11803654 11803792 -140733467 + B1_Mm SINE Alu 2 139 -8 4 675 189 74 0 0 chr5 11803792 11803819 -140733440 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 675 895 272 12 25 chr5 11803819 11803835 -140733424 + Lx7 LINE L1 7041 7052 -644 4 675 339 202 40 10 chr5 11804086 11804186 -140733073 - L1_Mur3 LINE L1 -4225 1655 1553 4 675 1658 189 105 6 chr5 11804616 11804967 -140732292 + ORR1B1 LTR MaLR 1 386 -8 4 675 358 167 0 89 chr5 11805301 11805380 -140731879 + MT2B LTR ERVL 197 268 -333 4 675 659 140 0 0 chr5 11805311 11805411 -140731848 + B1_Mus2 SINE Alu 48 147 0 4 675 310 127 14 14 chr5 11805965 11806037 -140731222 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 675 2296 210 25 21 chr5 11806115 11806752 -140730507 + Lx5 LINE L1 5278 5922 -1128 4 675 983 309 60 3 chr5 11806782 11807152 -140730107 + Lx5 LINE L1 6027 6417 -633 4 675 23 33 0 0 chr5 11809213 11809243 -140728016 + AT_rich Low_complexity Low_complexity 1 30 0 4 675 283 283 133 9 chr5 11809305 11809503 -140727756 + L1MA8 LINE L1 5802 6012 -177 4 675 4969 32 0 0 chr5 11811252 11811845 -140725414 - L1_Mm LINE L1 -968 4915 4323 4 675 3280 38 2 0 chr5 11811846 11812242 -140725017 + L1Md_T LINE L1 6184 6580 -2 4 675 26 0 0 0 chr5 11812266 11812292 -140724967 + AT_rich Low_complexity Low_complexity 1 26 0 4 675 266 244 270 15 chr5 11812618 11812818 -140724441 - Lx9 LINE L1 -7 7637 7387 4 675 495 234 117 0 chr5 11812817 11812945 -140724314 + Lx9 LINE L1 7244 7386 -258 4 675 416 100 0 0 chr5 11812998 11813058 -140724201 + ORR1B2 LTR MaLR 335 394 0 4 675 776 201 191 0 chr5 11813058 11813262 -140723997 + ORR1B2-int LTR MaLR 1 243 -1266 4 675 2770 163 114 2 chr5 11813276 11813793 -140723466 - Lx2 LINE L1 -1 6996 6422 4 675 4588 221 67 24 chr5 11813856 11814939 -140722320 + ORR1B2-int LTR MaLR 270 1403 -106 4 675 1123 82 0 0 chr5 11814939 11815086 -140722173 + B1_Mus2 SINE Alu 1 147 0 4 675 4588 221 67 24 chr5 11815086 11815099 -140722160 + ORR1B2-int LTR MaLR 1404 1417 -92 4 675 360 0 0 0 chr5 11815099 11815139 -140722120 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 4 675 4588 221 67 24 chr5 11815139 11815230 -140722029 + ORR1B2-int LTR MaLR 1418 1508 -1 4 675 999 201 264 24 chr5 11815230 11815526 -140721733 + ORR1B2 LTR MaLR 1 367 0 4 675 546 43 0 0 chr5 11815537 11815606 -140721653 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 675 433 305 101 110 chr5 11817740 11818127 -140719132 - MTE2a LTR MaLR -15 364 18 4 675 343 231 0 0 chr5 11818369 11818434 -140718825 + RMER2 LTR ERV1 15 79 -488 4 675 382 276 103 124 chr5 11818432 11818763 -140718496 + RMER2 LTR ERV1 228 551 -16 4 675 21 82 0 0 chr5 11819103 11819152 -140718107 + AT_rich Low_complexity Low_complexity 1 49 0 4 675 2374 162 87 14 chr5 11819623 11820060 -140717199 - Lx4A LINE L1 0 7058 6590 4 675 439 356 58 55 chr5 11820323 11820479 -140716780 + MTC LTR MaLR 1 154 -267 4 675 3954 40 25 2 chr5 11820479 11820959 -140716300 + MT2_Mm LTR ERVL 3 493 0 4 675 439 356 58 55 chr5 11820959 11821200 -140716059 + MTC LTR MaLR 155 399 -22 4 675 2067 103 13 3 chr5 11821460 11821763 -140715496 + L1_Mus3 LINE L1 6331 6636 -2 4 675 201 310 68 27 chr5 11822092 11822165 -140715094 - L2c LINE L2 -33 3354 3279 4 675 8981 2 1 6 chr5 11823232 11824314 -140712945 - L1Md_A LINE L1 0 6582 5504 4 675 554 0 15 0 chr5 11824577 11824643 -140712616 + (TTTTG)n Simple_repeat Simple_repeat 4 70 0 4 675 908 220 48 74 chr5 11824659 11825037 -140712222 + RLTR9A LTR ERVK 1 368 0 4 675 2504 204 14 14 chr5 11825277 11825788 -140711471 - Lx2A1 LINE L1 -5 7003 6493 4 675 27 0 0 0 chr5 11826381 11826408 -140710851 + AT_rich Low_complexity Low_complexity 1 27 0 4 675 210 364 65 43 chr5 11826504 11826533 -140710726 + ID_B1 SINE B4 84 224 0 4 675 270 352 92 9 chr5 11826533 11826642 -140710617 + B1F2 SINE Alu 32 149 0 4 675 356 355 77 18 chr5 11827876 11828097 -140709162 - FordPrefect DNA Tip100 -393 1290 1057 4 675 367 316 12 133 chr5 11828739 11828980 -140708279 + B3 SINE B2 5 216 0 4 675 23 68 0 0 chr5 11829024 11829068 -140708191 + AT_rich Low_complexity Low_complexity 1 44 0 4 675 444 319 93 21 chr5 11829263 11829554 -140707705 - Lx8 LINE L1 -453 7020 6701 4 675 427 322 14 7 chr5 11829616 11829760 -140707499 + RSINE1 SINE B4 4 148 -17 4 675 342 308 142 19 chr5 11829840 11830002 -140707257 + B3A SINE B2 1 182 -16 4 675 738 211 0 0 chr5 11830018 11830193 -140707066 + (CA)n Simple_repeat Simple_repeat 1 175 0 4 675 23 54 0 0 chr5 11830194 11830231 -140707028 + AT_rich Low_complexity Low_complexity 1 37 0 4 675 22 0 0 0 chr5 11831602 11831624 -140705635 + AT_rich Low_complexity Low_complexity 1 22 0 4 675 573 55 0 0 chr5 11831822 11831895 -140705364 + (TA)n Simple_repeat Simple_repeat 1 73 0 4 675 247 348 70 48 chr5 11832033 11832220 -140705039 - MLT1A0 LTR MaLR -10 355 165 4 675 242 358 7 19 chr5 11832222 11832404 -140704855 + GA-rich Low_complexity Low_complexity 1 179 0 4 675 328 291 18 54 chr5 11832462 11832629 -140704630 + GA-rich Low_complexity Low_complexity 1 161 0 4 675 737 177 11 0 chr5 11832657 11832832 -140704427 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 4 675 241 321 60 0 chr5 11832845 11832929 -140704330 - MLT1A0 LTR MaLR -191 174 86 4 675 1312 346 92 45 chr5 11833198 11834318 -140702941 - Lx8 LINE L1 -215 7258 6072 4 675 1717 178 42 20 chr5 11834318 11834719 -140702540 - RMER17C LTR ERVK 0 410 1 4 675 1312 346 92 45 chr5 11834719 11834872 -140702387 - Lx8 LINE L1 -1402 6071 5922 4 675 1254 240 192 50 chr5 11834872 11835367 -140701892 + RMER2 LTR ERV1 3 567 0 4 675 1312 346 92 45 chr5 11835367 11835446 -140701813 - Lx8 LINE L1 -1552 5921 5842 4 675 631 71 10 10 chr5 11836627 11836726 -140700533 + (TA)n Simple_repeat Simple_repeat 2 100 0 4 675 280 265 24 24 chr5 11836726 11836802 -140700457 + RMER2 LTR ERV1 490 567 0 4 675 30 59 0 0 chr5 11836829 11836880 -140700379 + AT_rich Low_complexity Low_complexity 1 51 0 4 675 1099 75 0 20 chr5 11836881 11837031 -140700228 + B1_Mm SINE Alu 1 147 0 4 675 321 118 0 0 chr5 11837034 11837085 -140700174 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 675 441 161 0 0 chr5 11837087 11837174 -140700085 + GA-rich Low_complexity Low_complexity 2 88 0 4 675 679 245 58 0 chr5 11838088 11838243 -140699016 + ORR1D1 LTR MaLR 1 164 -210 4 675 474 18 0 0 chr5 11838248 11838303 -140698956 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 675 192 185 32 11 chr5 11838329 11838422 -140698837 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 4 675 789 257 38 14 chr5 11838425 11838634 -140698625 + ORR1D1 LTR MaLR 158 371 -3 4 675 2009 59 0 4 chr5 11839409 11839663 -140697596 - L1_Mus1 LINE L1 -229 6338 6086 4 675 1767 80 0 4 chr5 11839663 11839902 -140697357 + L1_Mus1 LINE L1 6329 6566 -1 4 675 536 360 4 39 chr5 11839942 11840173 -140697086 + MTE2b LTR MaLR 103 325 -54 4 675 1196 224 95 30 chr5 11840199 11840632 -140696627 - Lx9 LINE L1 -11 7633 7173 4 675 22 0 0 0 chr5 11840795 11840817 -140696442 + AT_rich Low_complexity Low_complexity 1 22 0 4 675 261 277 0 12 chr5 11840912 11840996 -140696263 + L1M2 LINE L1 5417 5499 -792 4 675 479 45 15 0 chr5 11841520 11841586 -140695673 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 4 675 237 184 0 0 chr5 11842099 11842148 -140695111 + Lx2A1 LINE L1 4350 4398 -1479 4 675 1390 138 13 0 chr5 11842165 11842404 -140694855 - Lx2A1 LINE L1 -1237 4640 4399 4 675 7824 165 17 30 chr5 11842411 11844783 -140692476 + Lx2A1 LINE L1 4652 7000 -8 4 675 499 275 180 149 chr5 11844819 11845242 -140692017 - RMER6B LTR ERVK -25 436 1 4 675 426 108 0 0 chr5 11847478 11847552 -140689707 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 675 280 272 68 0 chr5 11850381 11850484 -140686775 + B1_Mur4 SINE Alu 19 128 -22 4 675 362 240 100 8 chr5 11850894 11851024 -140686235 - B3 SINE B2 -2 214 73 4 675 3305 174 126 6 chr5 11851807 11852528 -140684731 - RMER17D2 LTR ERVK 0 809 2 4 675 267 93 0 0 chr5 11853242 11853285 -140683974 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 675 444 105 0 0 chr5 11853469 11853545 -140683714 + (TC)n Simple_repeat Simple_repeat 1 76 0 4 675 303 28 0 0 chr5 11853545 11853581 -140683678 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 675 3076 204 49 38 chr5 11853858 11854754 -140682505 + L1_Mur2 LINE L1 3074 3979 -1898 4 675 31 26 0 0 chr5 11856235 11856273 -140680986 + AT_rich Low_complexity Low_complexity 1 38 0 4 675 545 177 9 0 chr5 11856312 11856425 -140680834 + L1_Mur2 LINE L1 4105 4218 -1659 4 675 1306 207 3 9 chr5 11856427 11856753 -140680506 - ORR1A4-int LTR MaLR -920 1043 720 4 675 719 201 14 194 chr5 11856642 11856920 -140680339 - MT2B LTR ERVL -339 262 35 4 675 3010 195 30 68 chr5 11856804 11857548 -140679711 - ORR1A4-int LTR MaLR -1234 729 15 4 675 703 250 111 158 chr5 11857558 11857900 -140679359 - ORR1A4 LTR MaLR -1 328 3 4 675 1872 158 3 0 chr5 11857906 11858217 -140679042 - ORR1A2 LTR MaLR 0 327 16 5 675 6222 159 41 7 chr5 11858221 11859358 -140677901 - ORR1A2-int LTR MaLR 0 1963 788 5 675 261 301 23 46 chr5 11859348 11859435 -140677824 - RMER6B LTR ERVK -80 381 297 5 675 24 91 0 0 chr5 11859497 11859563 -140677696 + AT_rich Low_complexity Low_complexity 1 66 0 5 675 1509 154 66 0 chr5 11859576 11859835 -140677424 - L1_Mus4 LINE L1 -6 6630 6355 5 675 497 208 174 48 chr5 11859883 11860050 -140677209 - RMER6B LTR ERVK -251 210 23 5 675 637 179 57 0 chr5 11860018 11860141 -140677118 - RMER6B LTR ERVK -331 130 1 5 675 22 0 0 0 chr5 11860313 11860335 -140676924 + AT_rich Low_complexity Low_complexity 1 22 0 5 675 1645 202 38 82 chr5 11860366 11860766 -140676493 + RLTR41 LTR ERV1 65 446 0 5 675 755 153 0 68 chr5 11860797 11860930 -140676329 - B2_Mm2 SINE B2 -70 125 2 5 675 376 204 45 0 chr5 11861047 11861135 -140676124 - RLTR19 LTR ERVK -1 498 404 5 675 27 29 0 0 chr5 11861762 11861796 -140675463 + AT_rich Low_complexity Low_complexity 1 34 0 5 675 8015 165 39 10 chr5 11863484 11865096 -140672163 + L1_Mur1 LINE L1 3368 5026 -860 5 675 5230 202 27 11 chr5 11865103 11866214 -140671045 + Lx3C LINE L1 5843 6971 -5 5 675 1220 309 82 2 chr5 11866242 11866732 -140670527 + Lx7 LINE L1 6702 7230 -466 5 675 203 81 81 0 chr5 11866839 11866876 -140670383 + T-rich Low_complexity Low_complexity 1 40 0 5 675 22 35 0 0 chr5 11866964 11866993 -140670266 + AT_rich Low_complexity Low_complexity 1 29 0 5 675 609 331 59 59 chr5 11867929 11868372 -140668887 + Lx8 LINE L1 6253 6695 -778 5 675 4356 147 23 14 chr5 11868431 11869161 -140668098 - RMER19A LTR ERVK 0 737 1 5 675 960 85 39 0 chr5 11869178 11869308 -140667951 + B1_Mus2 SINE Alu 1 135 -12 5 675 1070 303 40 58 chr5 11869325 11869765 -140667494 + Lx8 LINE L1 6781 7215 -258 5 675 3904 86 0 0 chr5 11869765 11870268 -140666991 - RLTR1C LTR ERV1 0 503 1 5 675 1070 303 40 58 chr5 11870268 11870324 -140666935 + Lx8 LINE L1 7216 7268 -205 5 675 876 233 0 0 chr5 11870455 11870635 -140666624 - Lx8 LINE L1 -924 6549 6370 5 675 314 333 67 29 chr5 11870809 11870914 -140666345 + PB1D7 SINE Alu 11 119 -1 5 675 247 325 76 38 chr5 11871503 11871634 -140665625 - ID_B1 SINE B4 -8 216 81 5 675 428 150 12 0 chr5 11871648 11871728 -140665531 + CT-rich Low_complexity Low_complexity 3 83 0 5 675 21 0 0 0 chr5 11871775 11871796 -140665463 + AT_rich Low_complexity Low_complexity 1 21 0 5 675 315 0 0 0 chr5 11872054 11872089 -140665170 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 5 675 486 33 0 0 chr5 11872246 11872306 -140664953 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 675 21 36 0 0 chr5 11873950 11873978 -140663281 + AT_rich Low_complexity Low_complexity 1 28 0 5 675 276 341 65 70 chr5 11874965 11875164 -140662095 - B3A SINE B2 0 198 1 5 675 1898 128 13 9 chr5 11875281 11875596 -140661663 + Lx3_Mus LINE L1 6694 7009 0 5 675 36 23 0 0 chr5 11875747 11875790 -140661469 + AT_rich Low_complexity Low_complexity 1 43 0 5 675 240 271 16 8 chr5 11875821 11875944 -140661315 + (TA)n Simple_repeat Simple_repeat 1 124 0 5 675 30 69 0 0 chr5 11876091 11876149 -140661110 + AT_rich Low_complexity Low_complexity 1 58 0 5 675 688 224 7 19 chr5 11876572 11876727 -140660532 - Lx7 LINE L1 -333 7363 7211 5 675 781 275 35 18 chr5 11876735 11876934 -140660325 + Lx7 LINE L1 6811 7012 -684 5 675 7056 52 57 0 chr5 11876934 11877842 -140659417 + L1Md_F2 LINE L1 5610 6569 -13 5 675 781 275 35 18 chr5 11877842 11877868 -140659391 + Lx7 LINE L1 7013 7039 -657 5 675 1066 67 0 0 chr5 11877869 11878003 -140659256 + B1_Mm SINE Alu 2 135 -12 5 675 213 65 0 0 chr5 11878005 11878036 -140659223 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 675 353 202 40 10 chr5 11878305 11878405 -140658854 - L1_Mur3 LINE L1 -4225 1655 1553 5 675 1647 195 106 6 chr5 11878836 11879186 -140658073 + ORR1B1 LTR MaLR 2 386 -8 5 675 3632 25 2 0 chr5 11879248 11879682 -140657577 + L1_Mm LINE L1 3869 4303 -1580 5 675 290 182 29 57 chr5 11879958 11880028 -140657231 + MT2B LTR ERVL 197 264 -337 5 675 543 150 0 57 chr5 11879968 11880074 -140657185 + B1_Mus2 SINE Alu 48 147 0 5 675 279 175 0 0 chr5 11880074 11880131 -140657128 + A-rich Low_complexity Low_complexity 1 57 0 5 675 269 220 33 11 chr5 11880615 11880707 -140656552 + (TA)n Simple_repeat Simple_repeat 1 94 0 5 675 2323 216 22 15 chr5 11880785 11881420 -140655839 + Lx5 LINE L1 5278 5922 -1128 5 675 912 308 35 8 chr5 11881431 11881818 -140655441 + Lx5 LINE L1 5990 6416 -634 5 675 23 33 0 0 chr5 11883884 11883914 -140653345 + AT_rich Low_complexity Low_complexity 1 30 0 5 675 399 278 113 25 chr5 11883968 11884304 -140652955 + L1MA8 LINE L1 5794 6144 -147 5 675 230 335 66 0 chr5 11884825 11884947 -140652312 + Lx9 LINE L1 6966 7173 -471 5 675 437 236 125 8 chr5 11886464 11886592 -140650667 + Lx9 LINE L1 7244 7386 -258 5 675 379 161 0 5 chr5 11886630 11886705 -140650554 + ORR1B2 LTR MaLR 312 394 0 5 675 805 206 191 0 chr5 11886705 11886909 -140650350 + ORR1B2-int LTR MaLR 1 243 -1266 5 675 2676 149 115 4 chr5 11886917 11887403 -140649856 - Lx2 LINE L1 0 6997 6458 5 675 4579 228 62 36 chr5 11887405 11888576 -140648683 + ORR1B2-int LTR MaLR 200 1403 -106 5 675 1123 68 7 0 chr5 11888576 11888722 -140648537 + B1_Mm SINE Alu 1 147 0 5 675 4579 228 62 36 chr5 11888722 11888735 -140648524 + ORR1B2-int LTR MaLR 1404 1417 -92 5 675 378 42 0 0 chr5 11888735 11888783 -140648476 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 5 675 4579 228 62 36 chr5 11888783 11888874 -140648385 + ORR1B2-int LTR MaLR 1418 1508 -1 5 675 1017 191 267 27 chr5 11888874 11889170 -140648089 + ORR1B2 LTR MaLR 1 367 0 5 675 396 0 0 0 chr5 11889181 11889225 -140648034 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 675 301 322 187 21 chr5 11891376 11891563 -140645696 - MTE2a LTR MaLR -15 364 147 5 675 355 292 68 37 chr5 11891628 11891803 -140645456 - MTE2a LTR MaLR -218 161 18 5 675 343 231 0 0 chr5 11892045 11892110 -140645149 + RMER2 LTR ERV1 15 79 -488 5 675 372 312 70 88 chr5 11892108 11892438 -140644821 + RMER2 LTR ERV1 228 551 -16 5 675 21 82 0 0 chr5 11892777 11892826 -140644433 + AT_rich Low_complexity Low_complexity 1 49 0 5 675 2144 164 65 88 chr5 11893297 11893777 -140643482 - Lx4A LINE L1 0 7058 6590 5 675 444 354 58 55 chr5 11894040 11894196 -140643063 + MTC LTR MaLR 1 154 -267 5 675 3914 44 25 2 chr5 11894196 11894676 -140642583 + MT2_Mm LTR ERVL 3 493 0 5 675 444 354 58 55 chr5 11894676 11894917 -140642342 + MTC LTR MaLR 155 399 -22 5 675 2082 99 13 3 chr5 11895177 11895480 -140641779 + L1_Mus3 LINE L1 6331 6636 -2 5 675 201 310 68 27 chr5 11895809 11895882 -140641377 - L2c LINE L2 -33 3354 3279 5 675 190 0 67 0 chr5 11897055 11897085 -140640174 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 5 675 1059 206 52 73 chr5 11897101 11897464 -140639795 + RLTR9A LTR ERVK 1 436 -1 5 675 2559 203 14 10 chr5 11897705 11898213 -140639046 - Lx2A1 LINE L1 -6 7002 6493 5 675 28 0 0 0 chr5 11898807 11898835 -140638424 + AT_rich Low_complexity Low_complexity 1 28 0 5 675 210 364 65 43 chr5 11898931 11898960 -140638299 + ID_B1 SINE B4 84 224 0 5 675 270 352 92 9 chr5 11898960 11899069 -140638190 + B1F2 SINE Alu 32 149 0 5 675 248 368 83 12 chr5 11900134 11900302 -140636957 - FordPrefect DNA Tip100 -174 1509 1330 5 675 366 352 84 17 chr5 11900316 11900553 -140636706 - FordPrefect DNA Tip100 -393 1290 1038 5 675 528 325 14 23 chr5 11901176 11901390 -140635869 + B3 SINE B2 5 216 0 5 675 23 68 0 0 chr5 11901434 11901478 -140635781 + AT_rich Low_complexity Low_complexity 1 44 0 5 675 446 327 63 27 chr5 11901673 11901960 -140635299 - Lx8 LINE L1 -453 7020 6694 5 675 463 315 14 7 chr5 11902026 11902170 -140635089 + RSINE1 SINE B4 4 148 -17 5 675 338 302 142 19 chr5 11902250 11902412 -140634847 + B3A SINE B2 1 182 -16 5 675 702 181 0 0 chr5 11902428 11902572 -140634687 + (CA)n Simple_repeat Simple_repeat 1 144 0 5 675 30 27 0 0 chr5 11902602 11902639 -140634620 + AT_rich Low_complexity Low_complexity 1 37 0 5 675 27 87 0 0 chr5 11903890 11903959 -140633300 + AT_rich Low_complexity Low_complexity 1 69 0 5 675 22 0 0 0 chr5 11904013 11904035 -140633224 + AT_rich Low_complexity Low_complexity 1 22 0 5 675 405 0 0 0 chr5 11904233 11904278 -140632981 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 675 280 318 0 53 chr5 11904591 11904780 -140632479 + GA-rich Low_complexity Low_complexity 2 180 0 5 675 312 297 18 54 chr5 11904845 11905012 -140632247 + GA-rich Low_complexity Low_complexity 1 161 0 5 675 747 182 0 0 chr5 11905059 11905300 -140631959 + (CAGAGA)n Simple_repeat Simple_repeat 1 241 0 5 675 238 325 60 0 chr5 11905300 11905383 -140631876 - MLT1A0 LTR MaLR -191 174 87 5 675 1315 339 100 55 chr5 11905652 11906774 -140630485 - Lx8 LINE L1 -215 7258 6072 5 675 1744 181 30 20 chr5 11906774 11907180 -140630079 - RMER17C LTR ERVK 0 410 1 5 675 1315 339 100 55 chr5 11907180 11907333 -140629926 - Lx8 LINE L1 -1402 6071 5922 5 675 1424 249 146 48 chr5 11907333 11907460 -140629799 + RMER2 LTR ERV1 3 188 -379 5 675 552 15 0 0 chr5 11907460 11907525 -140629734 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 675 1424 249 146 48 chr5 11907525 11907912 -140629347 + RMER2 LTR ERV1 189 567 0 5 675 1315 339 100 55 chr5 11907912 11907989 -140629270 - Lx8 LINE L1 -1552 5921 5844 5 675 376 111 14 14 chr5 11909172 11909245 -140628014 + (TA)n Simple_repeat Simple_repeat 2 74 0 5 675 280 265 24 24 chr5 11909245 11909321 -140627938 + RMER2 LTR ERV1 490 567 0 5 675 39 38 0 0 chr5 11909348 11909401 -140627858 + AT_rich Low_complexity Low_complexity 1 53 0 5 675 1099 75 0 20 chr5 11909402 11909552 -140627707 + B1_Mm SINE Alu 1 147 0 5 675 363 44 0 0 chr5 11909556 11909601 -140627658 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 675 423 165 0 0 chr5 11909603 11909688 -140627571 + GA-rich Low_complexity Low_complexity 2 86 0 5 675 666 234 65 0 chr5 11910598 11910752 -140626507 + ORR1D1 LTR MaLR 1 164 -210 5 675 531 0 0 0 chr5 11910757 11910816 -140626443 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 675 241 183 21 11 chr5 11910842 11910936 -140626323 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 5 675 767 280 34 5 chr5 11910939 11911147 -140626112 + ORR1D1 LTR MaLR 158 371 -3 5 675 2055 51 0 4 chr5 11911927 11912181 -140625078 - L1_Mus1 LINE L1 -229 6338 6086 5 675 1797 71 0 4 chr5 11912181 11912420 -140624839 + L1_Mus1 LINE L1 6329 6566 -1 5 675 527 346 26 42 chr5 11912475 11912740 -140624519 + MTEa LTR MaLR 113 373 -6 5 675 1124 228 99 27 chr5 11912741 11913155 -140624104 - Lx9 LINE L1 -28 7616 7173 5 675 23 54 0 0 chr5 11913302 11913339 -140623920 + AT_rich Low_complexity Low_complexity 1 37 0 5 675 248 289 0 12 chr5 11913434 11913518 -140623741 + L1M2 LINE L1 5417 5499 -792 5 675 244 308 23 23 chr5 11913756 11913932 -140623327 + L1M2 LINE L1 5572 5747 -442 5 675 452 48 16 0 chr5 11914037 11914100 -140623159 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 5 675 264 163 0 0 chr5 11914613 11914662 -140622597 + Lx2A1 LINE L1 4350 4398 -1479 6 675 1371 150 8 0 chr5 11914678 11914918 -140622341 - Lx2A1 LINE L1 -1237 4640 4399 6 675 7816 168 18 30 chr5 11914925 11917294 -140619965 + Lx2A1 LINE L1 4652 7000 -8 6 675 786 267 132 141 chr5 11917332 11917772 -140619487 - RMER6B LTR ERVK -25 436 1 6 675 357 186 0 0 chr5 11919907 11919966 -140617293 - HAL1-3A_ME LINE L1 -824 2034 1976 6 675 219 325 0 0 chr5 11919966 11920043 -140617216 + (TG)n Simple_repeat Simple_repeat 1 77 0 6 675 280 295 57 0 chr5 11922850 11922955 -140614304 + B1_Mur4 SINE Alu 19 129 -21 6 675 341 248 100 8 chr5 11923362 11923492 -140613767 - B3 SINE B2 -2 214 73 6 675 3304 189 80 7 chr5 11924274 11925027 -140612232 - RMER17D2 LTR ERVK 0 809 2 6 675 285 89 0 0 chr5 11925738 11925783 -140611476 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 675 462 119 0 0 chr5 11925967 11926051 -140611208 + (TC)n Simple_repeat Simple_repeat 1 84 0 6 675 462 36 0 0 chr5 11926051 11926107 -140611152 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 675 3003 204 47 45 chr5 11926390 11927287 -140609972 + L1_Mur2 LINE L1 3081 3979 -1898 6 676 31 26 0 0 chr5 11928795 11928833 -140608426 + AT_rich Low_complexity Low_complexity 1 38 0 6 676 544 177 9 0 chr5 11928872 11928985 -140608274 + L1_Mur2 LINE L1 4105 4218 -1659 6 676 3796 207 25 102 chr5 11928987 11930102 -140607157 - ORR1A4-int LTR MaLR -920 1043 15 6 676 966 239 144 82 chr5 11930114 11930419 -140606840 - ORR1A4 LTR MaLR -3 326 3 6 676 1851 171 3 0 chr5 11930425 11930747 -140606512 - ORR1A2 LTR MaLR 0 327 5 6 676 3517 159 65 25 chr5 11930751 11931430 -140605829 - ORR1A2-int LTR MaLR 0 1963 1258 6 676 468 243 39 61 chr5 11932277 11932533 -140604726 - RMER17C LTR ERVK -66 344 5 6 676 19706 189 53 54 chr5 11932894 11934232 -140603027 + L1_Mus2 LINE L1 516 2112 -3774 6 676 5678 78 8 5 chr5 11934232 11934991 -140602268 - L1_Mus1 LINE L1 0 6567 5807 6 676 22543 119 8 9 chr5 11934991 11939377 -140597882 + L1_Mus2 LINE L1 2190 6566 0 6 676 189 0 0 0 chr5 11939497 11939518 -140597741 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 676 486 0 0 0 chr5 11939518 11939571 -140597688 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 676 26 50 0 0 chr5 11940610 11940650 -140596609 + AT_rich Low_complexity Low_complexity 1 40 0 6 676 17507 112 36 22 chr5 11940655 11943451 -140593808 + L1VL4 LINE L1 17 2696 -863 6 676 198 0 0 0 chr5 11943451 11943473 -140593786 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 676 17507 93 27 11 chr5 11943473 11944327 -140592932 + L1VL4 LINE L1 2697 3554 -5 6 676 35 41 0 0 chr5 11944344 11944393 -140592866 + AT_rich Low_complexity Low_complexity 1 49 0 6 676 1126 88 0 0 chr5 11944656 11944803 -140592456 + B1_Mus1 SINE Alu 1 147 -1 6 676 276 133 0 0 chr5 11944803 11944863 -140592396 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 6 676 665 238 0 8 chr5 11946027 11946154 -140591105 - RLTR17 LTR ERVK 0 692 567 6 676 862 45 0 0 chr5 11946153 11946263 -140590996 + B1_Mm SINE Alu 25 134 -13 6 676 362 20 40 0 chr5 11946263 11946313 -140590946 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 6 676 810 68 16 49 chr5 11946313 11946325 -140590934 + B1_Mur4 SINE Alu 138 144 -6 6 676 3257 138 28 4 chr5 11946324 11946868 -140590391 - RLTR17 LTR ERVK -135 557 1 6 676 2369 193 38 74 chr5 11947669 11948251 -140589008 + RLTR31_Mm LTR ERVK 1 561 0 6 676 237 191 16 16 chr5 11949032 11949075 -140588184 + A-rich Low_complexity Low_complexity 3 44 0 6 676 3520 39 14 2 chr5 11949075 11949532 -140587727 + L1Md_F2 LINE L1 6141 6582 0 6 676 349 352 55 12 chr5 11949662 11949826 -140587433 - MLT1E2 LTR MaLR -113 514 344 6 676 233 309 35 52 chr5 11952113 11952229 -140585030 - Charlie12 DNA MER1_type -2708 165 52 6 676 663 25 0 0 chr5 11952270 11952351 -140584908 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 676 277 273 13 13 chr5 11952995 11953073 -140584186 - LTR33A LTR ERVL 0 520 443 6 676 3355 20 8 2 chr5 11953509 11953903 -140583356 - MTA_Mm LTR MaLR 0 396 1 6 676 11523 112 14 2 chr5 11954856 11957308 -140579951 - L1_Mus3 LINE L1 -7 6631 4153 6 676 37724 46 2 3 chr5 11957307 11963708 -140573551 - L1Md_T LINE L1 0 6585 100 6 676 18454 120 15 13 chr5 11963710 11967478 -140569781 - L1_Mus3 LINE L1 -1712 4171 392 6 676 21 0 0 0 chr5 11967675 11967696 -140569563 + AT_rich Low_complexity Low_complexity 1 21 0 6 676 201 270 0 60 chr5 11968587 11968654 -140568605 + GA-rich Low_complexity Low_complexity 2 64 0 6 676 332 321 67 54 chr5 11969079 11969303 -140567956 - MER21B LTR ERV1 -198 665 439 6 676 207 348 9 9 chr5 11969704 11969817 -140567442 + (CATATA)n Simple_repeat Simple_repeat 6 118 0 6 676 285 29 0 0 chr5 11970408 11970442 -140566817 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 676 564 333 124 29 chr5 11970543 11970923 -140566336 - MLT1C LTR MaLR 0 467 52 6 676 231 275 70 16 chr5 11972185 11972297 -140564962 - MIRc SINE MIR -124 144 25 6 676 25 0 0 0 chr5 11972503 11972528 -140564731 + AT_rich Low_complexity Low_complexity 1 25 0 6 676 325 272 87 10 chr5 11972551 11972655 -140564604 - B3 SINE B2 -104 112 1 6 676 801 331 45 8 chr5 11972936 11973201 -140564058 - B4 SINE B4 -2 290 16 6 676 704 160 15 15 chr5 11973354 11973487 -140563772 + MTC LTR MaLR 1 133 -288 6 676 2796 208 85 25 chr5 11973488 11974138 -140563121 - RMER1A Other Other -26 1004 316 6 676 257 181 6 144 chr5 11974583 11974686 -140562573 + MTC LTR MaLR 125 184 -237 6 676 216 0 0 0 chr5 11975641 11975665 -140561594 + (A)n Simple_repeat Simple_repeat 1 24 0 6 676 366 23 0 0 chr5 11977338 11977381 -140559878 + (CAA)n Simple_repeat Simple_repeat 2 44 0 6 676 610 363 40 16 chr5 11978595 11978844 -140558415 - B4A SINE B4 -32 260 6 6 676 27 0 0 0 chr5 11979245 11979272 -140557987 + AT_rich Low_complexity Low_complexity 1 27 0 6 676 1410 250 180 13 chr5 11979352 11979903 -140557356 + L1_Rod LINE L1 4653 5295 -552 6 676 240 200 25 12 chr5 11979942 11980023 -140557236 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 676 24 0 0 0 chr5 11980024 11980048 -140557211 + AT_rich Low_complexity Low_complexity 1 24 0 6 676 917 291 14 22 chr5 11980085 11980362 -140556897 - Lx6 LINE L1 -35 7425 7151 6 676 26 0 0 0 chr5 11981127 11981153 -140556106 + AT_rich Low_complexity Low_complexity 1 26 0 6 676 317 292 10 0 chr5 11982389 11982485 -140554774 - ID_B1 SINE B4 -2 222 126 6 676 535 296 7 7 chr5 11982648 11982791 -140554468 - MLT1C LTR MaLR -28 439 297 6 676 639 250 82 11 chr5 11983075 11983257 -140554002 + MIR SINE MIR 68 262 0 6 676 252 0 0 0 chr5 11983365 11983393 -140553866 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 676 299 351 14 82 chr5 11984053 11984199 -140553060 - B4A SINE B4 -151 141 6 6 676 23 86 0 0 chr5 11984376 11984434 -140552825 + AT_rich Low_complexity Low_complexity 1 58 0 6 676 234 0 0 0 chr5 11987475 11987501 -140549758 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 6 676 2705 93 23 130 chr5 11989620 11990152 -140547107 + IAPLTR2_Mm LTR ERVK 1 475 0 6 676 4162 87 14 33 chr5 11990153 11990907 -140546352 + IAPEz-int LTR ERVK 9 662 -5819 6 676 2219 68 0 0 chr5 11990907 11991185 -140546074 + IAPEz-int LTR ERVK 1359 1636 -4845 6 676 6065 42 4 13 chr5 11991184 11991935 -140545324 + IAPEz-int LTR ERVK 5736 6479 -2 6 676 2800 90 87 50 chr5 11991937 11992395 -140544864 + IAPLTR2_Mm LTR ERVK 1 475 0 6 676 692 302 0 64 chr5 11992449 11992651 -140544608 + B3A SINE B2 4 192 -6 6 676 595 185 123 6 chr5 11992651 11992814 -140544445 + RLTR47_MM LTR ERV1 350 531 -1 6 676 487 323 111 74 chr5 11993233 11994243 -140543016 + MuRRS4-int LTR ERV1 500 1545 -6011 6 676 23 68 0 0 chr5 11994438 11994482 -140542777 + AT_rich Low_complexity Low_complexity 1 44 0 6 676 594 91 0 0 chr5 11994627 11994726 -140542533 + (GA)n Simple_repeat Simple_repeat 1 99 0 6 676 1316 215 33 0 chr5 11994726 11995000 -140542259 - RLTR16 LTR ERVK -222 283 1 6 676 297 0 0 0 chr5 11995026 11995059 -140542200 + (A)n Simple_repeat Simple_repeat 1 33 0 6 676 2463 185 76 18 chr5 11995059 11995665 -140541594 - MYSERV16_I-int LTR ERVK -21 2305 1665 6 676 3843 140 43 19 chr5 11995666 11996336 -140540923 + Lx2 LINE L1 6310 6995 -2 6 676 515 43 14 0 chr5 11996353 11996423 -140540836 + (GA)n Simple_repeat Simple_repeat 2 72 0 6 676 522 207 0 0 chr5 11996433 11996549 -140540710 - MYSERV16_I-int LTR ERVK -1934 392 277 6 676 1040 192 17 56 chr5 11996558 11996845 -140540414 - RMER3D-int LTR ERVK -1464 1378 1103 6 676 402 163 44 44 chr5 11997093 11997183 -140540076 - RMER3D-int LTR ERVK -1731 1111 1022 6 676 426 241 101 50 chr5 11997462 11997641 -140539618 - RMER3D-int LTR ERVK -2459 383 196 6 676 2183 194 18 98 chr5 11997824 11998016 -140539243 - RLTR16 LTR ERVK 0 505 329 6 676 182 37 0 36 chr5 11998016 11998044 -140539215 + (TTA)n Simple_repeat Simple_repeat 1 27 0 6 676 3895 58 0 66 chr5 11998046 11998603 -140538656 - L1_Mus2 LINE L1 -1 6565 6046 6 676 2183 194 18 98 chr5 11998603 11998956 -140538303 - RLTR16 LTR ERVK -177 328 1 6 676 1869 52 0 0 chr5 11999374 11999605 -140537654 + L1Md_T LINE L1 6352 6582 0 6 676 3598 160 21 44 chr5 12000009 12000664 -140536595 + Lx4A LINE L1 6418 7057 -1 1 676 597 290 79 10 chr5 12000898 12001100 -140536159 - B3 SINE B2 0 216 1 2 676 10932 99 1 3 chr5 12001199 12003265 -140533994 - L1_Mus1 LINE L1 -91 6476 3616 3 676 8847 85 11 1 chr5 12003257 12005198 -140532061 - L1_Mus1 LINE L1 -3702 2181 217 3 676 608 365 79 7 chr5 12005484 12005787 -140531472 + MER44A DNA MER2_type 7 331 -8 4 676 221 57 29 0 chr5 12006950 12006985 -140530274 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 5 676 5200 46 0 0 chr5 12007062 12007698 -140529561 - L1_Mm LINE L1 -820 5063 4428 6 676 2581 29 0 7 chr5 12007696 12007998 -140529261 + L1_Mm LINE L1 5286 5586 -297 7 676 7875 54 2 5 chr5 12007998 12008997 -140528262 + L1Md_F2 LINE L1 5587 6582 0 8 676 555 162 0 0 chr5 12009400 12009499 -140527760 + A-rich Low_complexity Low_complexity 1 99 0 9 676 3736 158 8 27 chr5 12009559 12010222 -140527037 - Lx2 LINE L1 0 6997 6348 1 676 436 328 109 0 chr5 12010787 12010915 -140526344 - B3A SINE B2 -18 180 39 1 676 944 290 52 34 chr5 12011583 12011908 -140525351 - Lx6 LINE L1 -74 7386 7056 1 676 878 83 0 0 chr5 12012019 12012139 -140525120 - L1Md_F2 LINE L1 -501 6081 5962 1 676 1852 58 29 0 chr5 12012122 12012362 -140524897 - L1Md_F2 LINE L1 -503 6079 5833 1 676 3854 56 4 0 chr5 12012362 12012848 -140524411 + L1Md_F2 LINE L1 6095 6582 0 1 676 281 47 0 23 chr5 12013199 12013243 -140524016 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 676 1531 143 110 23 chr5 12013517 12013817 -140523442 + Lx3B LINE L1 6644 6969 -4 1 676 300 317 9 46 chr5 12013951 12014060 -140523199 - PB1D10 SINE Alu 0 117 13 1 676 378 0 0 0 chr5 12014060 12014102 -140523157 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 676 229 218 11 33 chr5 12014104 12014194 -140523065 + A-rich Low_complexity Low_complexity 2 89 0 1 676 182 281 123 91 chr5 12014575 12014794 -140522465 - L2 LINE L2 -2603 816 591 1 676 45 0 0 0 chr5 12015684 12015729 -140521530 + AT_rich Low_complexity Low_complexity 1 45 0 2 676 1065 202 58 0 chr5 12015988 12016196 -140521063 - URR1B DNA MER1_type 0 225 6 2 676 1118 68 7 0 chr5 12017068 12017215 -140520044 - B1_Mus1 SINE Alu 0 148 1 2 676 1001 346 83 26 chr5 12017505 12018108 -140519151 - Lx9 LINE L1 -267 7377 6741 2 676 3794 88 131 60 chr5 12018652 12019353 -140517906 + RMER17A LTR ERVK 1 751 0 2 676 29 0 0 0 chr5 12020917 12020946 -140516313 + AT_rich Low_complexity Low_complexity 1 29 0 2 676 23 33 0 0 chr5 12021490 12021520 -140515739 + AT_rich Low_complexity Low_complexity 1 30 0 2 676 207 186 0 0 chr5 12021913 12021956 -140515303 + CT-rich Low_complexity Low_complexity 3 45 0 2 676 350 343 158 46 chr5 12022337 12022710 -140514549 - MLT1E1 LTR MaLR -62 592 178 2 676 344 320 50 0 chr5 12022902 12023002 -140514257 - MLT1E1 LTR MaLR -572 108 4 2 676 456 337 61 12 chr5 12023155 12023274 -140513985 - MTE2b LTR MaLR 0 379 232 2 676 236 225 207 95 chr5 12023274 12023295 -140513964 - RMER10A LTR ERVL -18 424 408 3 676 6913 57 45 5 chr5 12023295 12024188 -140513071 - RLTR13B3 LTR ERVK 0 929 1 3 676 456 337 61 12 chr5 12024188 12024212 -140513047 - MTE2b LTR MaLR -148 231 207 2 676 236 225 207 95 chr5 12024212 12024470 -140512789 - RMER10A LTR ERVL -35 407 87 3 676 683 289 91 53 chr5 12024501 12024764 -140512495 - MTE2a LTR MaLR -103 276 4 3 676 2944 239 46 20 chr5 12026620 12028070 -140509189 - Lx5 LINE L1 -298 7162 5356 3 676 446 297 37 86 chr5 12028184 12028346 -140508913 - RSINE1 SINE B4 0 165 12 3 676 335 214 115 10 chr5 12031442 12031546 -140505713 - L1MA6 LINE L1 -41 6259 6145 3 676 480 278 169 24 chr5 12031559 12031609 -140505650 - L1MA6 LINE L1 -448 5852 5798 3 676 522 0 0 0 chr5 12031609 12031667 -140505592 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 676 339 65 0 0 chr5 12031668 12031714 -140505545 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 676 515 281 163 26 chr5 12031714 12032138 -140505121 - L1MA6 LINE L1 -503 5797 5313 3 676 590 328 44 19 chr5 12032207 12032417 -140504842 - L1MA6 LINE L1 -929 5214 4999 3 676 204 70 70 0 chr5 12032417 12032460 -140504799 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 676 590 328 44 19 chr5 12032460 12032610 -140504649 - L1MA6 LINE L1 -1145 4998 4846 3 676 373 286 62 57 chr5 12032612 12032805 -140504454 + B3A SINE B2 2 195 -3 3 676 25 51 0 0 chr5 12032810 12032849 -140504410 + AT_rich Low_complexity Low_complexity 1 39 0 4 676 26 50 0 0 chr5 12033041 12033081 -140504178 + AT_rich Low_complexity Low_complexity 1 40 0 4 676 21 0 0 0 chr5 12033326 12033347 -140503912 + AT_rich Low_complexity Low_complexity 1 21 0 4 676 2708 166 18 18 chr5 12033881 12034384 -140502875 + RMER1A Other Other 523 1025 -5 4 676 1060 95 0 0 chr5 12038424 12038571 -140498688 + B1_Mus1 SINE Alu 2 148 0 4 676 239 294 26 35 chr5 12039552 12039665 -140497594 - PB1D10 SINE Alu -5 112 1 4 676 348 24 0 0 chr5 12039951 12039992 -140497267 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 676 219 183 16 48 chr5 12040251 12040314 -140496945 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 4 676 21 71 0 0 chr5 12040969 12041011 -140496248 + AT_rich Low_complexity Low_complexity 1 42 0 4 676 488 325 7 13 chr5 12041052 12041205 -140496054 - ORR1E LTR MaLR -207 152 1 4 676 846 236 55 9 chr5 12041205 12041398 -140495861 - ORR1E-int LTR MaLR -53 1527 1325 4 676 267 335 50 46 chr5 12041396 12041615 -140495644 + RMER12 LTR ERVK 749 968 -354 5 676 1017 285 40 7 chr5 12041608 12041912 -140495347 - ORR1E-int LTR MaLR -1259 321 8 4 676 1016 261 62 79 chr5 12041925 12042279 -140494980 - ORR1E LTR MaLR -5 354 7 4 676 323 308 15 81 chr5 12043999 12044197 -140493062 + L1MC LINE L1 5259 5443 -890 5 676 477 122 0 0 chr5 12045288 12045362 -140491897 + (CATA)n Simple_repeat Simple_repeat 2 75 0 5 676 459 271 184 22 chr5 12047337 12047522 -140489737 - B3 SINE B2 -1 215 1 5 676 850 146 31 0 chr5 12047736 12047866 -140489393 + B1_Mus1 SINE Alu 3 136 -12 5 676 221 53 53 0 chr5 12047866 12047904 -140489355 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 676 2664 178 90 29 chr5 12047904 12048551 -140488708 - RMER6C LTR ERVK -4 686 1 5 676 262 252 39 29 chr5 12048556 12048658 -140488601 - Lx9 LINE L1 -203 7441 7339 5 676 361 254 124 48 chr5 12048681 12048793 -140488466 + Lx9 LINE L1 6902 7022 -622 5 676 378 0 0 0 chr5 12048793 12048835 -140488424 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 5 676 361 254 124 48 chr5 12048835 12048908 -140488351 + Lx9 LINE L1 7023 7101 -543 5 676 4123 68 35 9 chr5 12049130 12049676 -140487583 - LTRIS2 LTR ERV1 0 564 5 6 676 249 300 25 0 chr5 12049678 12049798 -140487461 + L1MCa LINE L1 1459 1581 -4927 6 676 1402 171 23 85 chr5 12049879 12050346 -140486913 + RLTR9F LTR ERVK 1 430 -7 6 676 24 0 0 0 chr5 12050479 12050503 -140486756 + AT_rich Low_complexity Low_complexity 1 24 0 6 676 27012 121 36 13 chr5 12050677 12052862 -140484397 - Lx3A LINE L1 -1058 5923 3656 6 676 969 69 0 0 chr5 12052862 12052992 -140484267 + (TTTC)n Simple_repeat Simple_repeat 3 132 0 6 676 27012 132 31 16 chr5 12052992 12056071 -140481188 - Lx3A LINE L1 -2231 3655 569 6 676 269 163 0 0 chr5 12056049 12056092 -140481167 - Lx3A LINE L1 -6260 724 682 6 676 465 249 152 15 chr5 12056203 12056407 -140480852 + L1MCa LINE L1 1988 2219 -4289 6 676 395 336 41 41 chr5 12056408 12056554 -140480705 + B3A SINE B2 4 149 -49 6 676 225 0 0 0 chr5 12056558 12056583 -140480676 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 676 441 0 0 0 chr5 12056583 12056631 -140480628 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 676 1619 201 98 28 chr5 12056796 12056978 -140480281 - RLTR11B LTR ERVK -37 416 241 6 676 1073 96 0 22 chr5 12056978 12057160 -140480099 + (TCC)n Simple_repeat Simple_repeat 3 180 0 7 676 654 49 0 0 chr5 12057166 12057248 -140480011 + (TC)n Simple_repeat Simple_repeat 1 82 0 7 676 1619 201 98 28 chr5 12057248 12057447 -140479812 - RLTR11B LTR ERVK -246 207 2 6 676 380 344 15 35 chr5 12058216 12058415 -140478844 + B3A SINE B2 4 198 0 7 84 3617 262 84 15 chr5 12058437 12059409 -140477850 + Lx6 LINE L1 6421 7459 -1 7 677 252 111 0 0 chr5 12060014 12060059 -140477200 + (CAAT)n Simple_repeat Simple_repeat 3 47 0 7 677 293 370 37 59 chr5 12060193 12060466 -140476793 + L2a LINE L2 3159 3425 -1 7 677 1041 112 0 7 chr5 12062069 12062213 -140475046 + B1_Mus1 SINE Alu 1 143 -5 7 677 34 24 0 0 chr5 12062656 12062697 -140474562 + AT_rich Low_complexity Low_complexity 1 41 0 7 677 258 105 0 0 chr5 12062787 12062825 -140474434 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 677 30097 158 98 61 chr5 12063115 12064588 -140472671 + Lx3_Mus LINE L1 3 1639 -4247 7 677 330 45 0 0 chr5 12064588 12064632 -140472627 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 8 677 30097 94 19 30 chr5 12064632 12069955 -140467304 + Lx3_Mus LINE L1 1640 7009 0 7 677 384 77 0 0 chr5 12070260 12070312 -140466947 + (TC)n Simple_repeat Simple_repeat 2 53 0 8 677 5115 160 93 0 chr5 12070435 12070524 -140466735 - Lx2 LINE L1 -21 6976 6884 8 677 204 40 0 0 chr5 12070524 12070549 -140466710 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 8 677 5115 160 93 0 chr5 12070549 12071416 -140465843 - Lx2 LINE L1 -114 6883 5933 8 677 403 286 0 99 chr5 12071426 12071597 -140465662 + RMER10B LTR ERVL 188 341 -57 8 677 3437 33 0 0 chr5 12071967 12072363 -140464896 - MTA_Mm LTR MaLR 0 396 1 8 677 23 0 0 0 chr5 12072569 12072592 -140464667 + AT_rich Low_complexity Low_complexity 1 23 0 8 677 519 335 65 40 chr5 12072676 12072874 -140464385 + MLT1B LTR MaLR 57 265 -125 8 677 209 57 0 28 chr5 12072874 12072910 -140464349 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 677 519 335 65 40 chr5 12072910 12073034 -140464225 + MLT1B LTR MaLR 266 387 -3 8 677 1690 201 92 25 chr5 12073078 12073522 -140463737 + RMER6C LTR ERVK 1 474 -216 8 677 258 254 15 0 chr5 12073525 12073592 -140463667 - Lx7 LINE L1 -262 7434 7367 9 677 291 315 11 11 chr5 12073605 12073698 -140463561 + GA-rich Low_complexity Low_complexity 1 93 0 9 677 3283 264 36 1 chr5 12073700 12074498 -140462761 - Lx7 LINE L1 -343 7353 6528 9 677 717 210 14 0 chr5 12074757 12074900 -140462359 + B1_Mur4 SINE Alu 5 149 -1 9 677 2033 200 8 10 chr5 12075331 12075720 -140461539 + ORR1B1 LTR MaLR 7 394 0 9 677 900 134 210 0 chr5 12075770 12075956 -140461303 - L1_Mur2 LINE L1 -1449 4428 4204 9 677 651 252 21 0 chr5 12076078 12076221 -140461038 - B1F2 SINE Alu -1 148 3 9 677 320 345 40 79 chr5 12076114 12076240 -140461019 - B4 SINE B4 -94 198 78 9 677 273 119 0 0 chr5 12077086 12077128 -140460131 + (TA)n Simple_repeat Simple_repeat 2 43 0 9 677 1154 218 98 83 chr5 12077128 12077464 -140459795 - MTB_Mm LTR MaLR -7 400 60 9 677 444 19 0 0 chr5 12077466 12077519 -140459740 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 677 227 151 57 0 chr5 12077519 12077572 -140459687 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 1 677 655 52 10 10 chr5 12077575 12077672 -140459587 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 1 677 1762 242 54 5 chr5 12078998 12079426 -140457833 + RLTR16 LTR ERVK 1 449 -56 1 677 425 48 0 31 chr5 12079699 12079764 -140457495 + (TTTTTG)n Simple_repeat Simple_repeat 3 65 0 1 677 445 331 57 28 chr5 12080675 12080852 -140456407 + B3 SINE B2 35 216 0 1 677 301 368 45 13 chr5 12081043 12081197 -140456062 + L1M3 LINE L1 4832 4990 -1153 1 677 234 316 9 95 chr5 12081199 12081306 -140455953 + B1F1 SINE Alu 5 100 -17 1 677 671 254 0 0 chr5 12081383 12081505 -140455754 + B3A SINE B2 3 124 -74 1 677 408 250 31 24 chr5 12081509 12081636 -140455623 + L1M3 LINE L1 5126 5253 -887 1 677 28860 132 11 18 chr5 12081715 12086328 -140450931 + L1_Mus2 LINE L1 677 5225 -658 1 677 216 0 0 0 chr5 12086328 12086352 -140450907 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 677 28860 81 18 17 chr5 12086352 12087676 -140449583 + L1_Mus2 LINE L1 5226 6566 0 1 677 33 0 0 0 chr5 12087678 12087711 -140449548 + AT_rich Low_complexity Low_complexity 1 33 0 1 677 256 153 17 55 chr5 12087731 12087855 -140449404 + L1M2 LINE L1 5319 5431 -866 1 677 189 121 0 0 chr5 12087858 12087891 -140449368 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 1 677 289 0 24 24 chr5 12087896 12087938 -140449321 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 677 507 315 41 38 chr5 12087981 12088301 -140448958 + L1M2 LINE L1 5475 5795 -496 1 677 26 0 0 0 chr5 12088729 12088755 -140448504 + AT_rich Low_complexity Low_complexity 1 26 0 1 677 263 415 7 7 chr5 12089158 12089306 -140447953 - B1_Mur1 SINE Alu -1 148 1 1 677 2931 27 118 16 chr5 12089341 12089714 -140447545 + IAPLTR2a LTR ERVK 1 411 0 1 677 447 313 85 33 chr5 12089728 12089999 -140447260 - Lx8 LINE L1 -2 7471 7187 1 677 204 167 0 0 chr5 12090904 12090952 -140446307 + GA-rich Low_complexity Low_complexity 3 50 0 1 677 330 275 80 60 chr5 12090953 12091104 -140446155 + HAL1-3A_ME LINE L1 2284 2437 -421 1 677 381 122 24 24 chr5 12091104 12091160 -140446099 + polypurine Low_complexity Low_complexity 1 56 0 1 677 1193 96 6 0 chr5 12091160 12091338 -140445921 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 1 677 381 122 24 24 chr5 12091338 12091365 -140445894 + polypurine Low_complexity Low_complexity 57 84 0 1 677 24 0 0 0 chr5 12091407 12091431 -140445828 + AT_rich Low_complexity Low_complexity 1 24 0 1 677 3083 67 52 14 chr5 12092139 12092565 -140444694 - L1_Mus1 LINE L1 -2 6565 6124 1 677 2264 63 0 0 chr5 12092566 12092852 -140444407 + L1_Mus1 LINE L1 5837 6122 -445 1 677 292 98 0 0 chr5 12092850 12092891 -140444368 + L1_Mm LINE L1 4908 4948 -935 1 677 661 267 106 5 chr5 12092965 12093153 -140444106 - B3 SINE B2 -9 207 1 1 677 21 36 0 0 chr5 12094021 12094049 -140443210 + AT_rich Low_complexity Low_complexity 1 28 0 1 677 2261 78 119 11 chr5 12094590 12094942 -140442317 + RLTR10 LTR ERVK 1 390 0 1 677 22 35 0 0 chr5 12095217 12095246 -140442013 + AT_rich Low_complexity Low_complexity 1 29 0 1 677 438 350 80 40 chr5 12095429 12095543 -140441716 + B4A SINE B4 8 122 -170 1 677 3116 83 0 2 chr5 12095543 12095951 -140441308 - MTB_Mm LTR MaLR 0 407 1 1 677 438 350 80 40 chr5 12095951 12095986 -140441273 + B4A SINE B4 123 165 -127 1 677 2004 99 111 36 chr5 12095986 12096372 -140440887 - RLTR9F LTR ERVK 0 415 1 1 677 438 350 80 40 chr5 12096372 12096417 -140440842 + B4A SINE B4 166 216 -76 1 677 258 56 0 0 chr5 12096417 12096453 -140440806 + (TTAA)n Simple_repeat Simple_repeat 1 36 0 1 677 438 350 80 40 chr5 12096453 12096530 -140440729 + B4A SINE B4 217 290 -2 1 677 223 189 0 19 chr5 12096579 12096633 -140440626 + A-rich Low_complexity Low_complexity 2 54 0 1 677 564 77 0 0 chr5 12096661 12096739 -140440520 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 677 362 233 11 11 chr5 12096745 12096836 -140440423 + L1MB1 LINE L1 5821 5911 -257 1 677 360 385 42 33 chr5 12096836 12097048 -140440211 + B4A SINE B4 7 220 -72 1 677 249 33 0 0 chr5 12097098 12097128 -140440131 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 677 242 268 24 24 chr5 12097129 12097213 -140440046 + L1MB2 LINE L1 5900 5983 -188 1 677 29 47 0 0 chr5 12097339 12097382 -140439877 + AT_rich Low_complexity Low_complexity 1 43 0 1 677 25 51 0 0 chr5 12098195 12098234 -140439025 + AT_rich Low_complexity Low_complexity 1 39 0 1 677 967 206 4 78 chr5 12098327 12098569 -140438690 - URR1B DNA MER1_type -1 224 1 1 677 182 234 21 0 chr5 12099652 12099699 -140437560 - L2c LINE L2 -11 3376 3329 1 677 567 278 77 86 chr5 12100169 12100378 -140436881 - B3 SINE B2 -3 213 7 1 677 483 210 16 16 chr5 12100513 12100634 -140436625 + Lx5 LINE L1 6930 7050 0 1 677 1023 186 109 31 chr5 12101466 12101760 -140435499 - Lx7 LINE L1 0 7696 7380 1 677 7068 248 46 32 chr5 12101761 12102911 -140434348 - Lx7 LINE L1 -699 6997 5828 1 677 351 44 0 0 chr5 12102911 12102956 -140434303 + (TTG)n Simple_repeat Simple_repeat 2 46 0 1 677 7068 194 36 14 chr5 12102956 12103991 -140433268 - Lx7 LINE L1 -53 5827 4786 1 677 198 0 0 0 chr5 12103991 12104013 -140433246 + (ATTTG)n Simple_repeat Simple_repeat 3 24 0 1 677 7068 194 36 14 chr5 12104013 12104470 -140432789 - Lx7 LINE L1 -1095 4785 4309 1 677 1700 301 39 12 chr5 12104500 12105092 -140432167 - Lx6 LINE L1 -11 7449 6842 1 677 739 173 15 0 chr5 12105125 12105258 -140432001 - Lx6 LINE L1 -566 6894 6760 1 677 728 138 0 8 chr5 12105270 12105401 -140431858 + (TTTC)n Simple_repeat Simple_repeat 4 133 0 1 677 210 118 0 0 chr5 12105407 12105441 -140431818 + (TCC)n Simple_repeat Simple_repeat 3 36 0 1 677 1489 262 6 23 chr5 12105448 12105792 -140431467 - Lx6 LINE L1 -731 6729 6392 1 677 3643 195 116 16 chr5 12105851 12106736 -140430523 - Lx7 LINE L1 -6457 1271 298 1 677 207 171 0 0 chr5 12106763 12106798 -140430461 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 677 584 271 0 0 chr5 12108159 12108292 -140428967 + B1F2 SINE Alu 4 136 -13 1 677 772 292 41 5 chr5 12108309 12108505 -140428754 + B3 SINE B2 14 216 0 1 677 327 65 0 0 chr5 12108505 12108551 -140428708 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1 677 1113 69 7 0 chr5 12108558 12108703 -140428556 - B1_Mus2 SINE Alu -1 146 1 1 677 391 301 84 20 chr5 12108831 12109042 -140428217 - B3A SINE B2 -1 215 1 1 677 67 0 0 0 chr5 12109132 12109199 -140428060 + AT_rich Low_complexity Low_complexity 1 67 0 1 677 1314 239 53 124 chr5 12110291 12110817 -140426442 - Lx7 LINE L1 -33 7663 7175 1 677 424 335 81 16 chr5 12111165 12111423 -140425836 - L1MC LINE L1 -2188 5694 5420 1 677 410 0 20 0 chr5 12111457 12111507 -140425752 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 677 24 0 0 0 chr5 12111768 12111792 -140425467 + AT_rich Low_complexity Low_complexity 1 24 0 1 677 23 0 0 0 chr5 12112016 12112039 -140425220 + AT_rich Low_complexity Low_complexity 1 23 0 1 677 236 302 28 28 chr5 12112218 12112327 -140424932 + MER5B DNA MER1_type 8 116 -62 1 677 1022 298 40 45 chr5 12113338 12113763 -140423496 - Lx7 LINE L1 -398 7298 6876 1 677 344 297 28 28 chr5 12114008 12114150 -140423109 - Lx8 LINE L1 -146 7327 7186 1 677 219 245 38 0 chr5 12114185 12114238 -140423021 + AmnSINE1 SINE SINE 35 89 -486 1 677 25 99 0 0 chr5 12115897 12115978 -140421281 + AT_rich Low_complexity Low_complexity 1 81 0 1 677 330 249 104 11 chr5 12117004 12117135 -140420124 - MLT1H2 LTR MaLR 0 579 390 1 677 699 260 26 9 chr5 12117603 12117836 -140419423 - L1MA4 LINE L1 -368 5932 5696 1 677 886 87 14 0 chr5 12120073 12120211 -140417048 + (TA)n Simple_repeat Simple_repeat 2 141 0 1 677 2677 171 83 22 chr5 12120424 12120694 -140416565 - Lx4B LINE L1 -6 7052 6746 1 677 1701 193 198 29 chr5 12120694 12120730 -140416529 - RMER2 LTR ERV1 0 567 529 1 677 207 0 0 0 chr5 12120730 12120753 -140416506 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 677 1701 193 198 29 chr5 12120753 12121201 -140416058 - RMER2 LTR ERV1 -39 528 1 1 677 2677 171 83 22 chr5 12121201 12121469 -140415790 - Lx4B LINE L1 -313 6745 6481 1 677 21 36 0 0 chr5 12121520 12121548 -140415711 + AT_rich Low_complexity Low_complexity 1 28 0 1 677 582 15 0 0 chr5 12121592 12121659 -140415600 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 677 771 66 0 0 chr5 12122016 12122122 -140415137 + (TA)n Simple_repeat Simple_repeat 1 106 0 1 677 1547 252 113 47 chr5 12122647 12123285 -140413974 - Lx9 LINE L1 0 7644 6965 1 677 330 80 0 0 chr5 12123358 12123408 -140413851 + (GTTTG)n Simple_repeat Simple_repeat 5 54 0 1 677 1099 88 0 7 chr5 12123408 12123556 -140413703 - B1_Mus1 SINE Alu 0 148 2 1 677 409 325 95 15 chr5 12123626 12123963 -140413296 - L1MB2 LINE L1 -119 6052 5689 1 677 233 315 78 11 chr5 12124503 12124593 -140412666 - B4 SINE B4 -83 209 114 1 677 235 254 116 110 chr5 12124735 12124881 -140412378 - L1MA5 LINE L1 -311 5989 5843 1 677 954 63 8 0 chr5 12124894 12125020 -140412239 + B1_Mus2 SINE Alu 1 127 -20 1 677 238 286 0 54 chr5 12125061 12125135 -140412124 - B4 SINE B4 -14 278 209 1 677 222 278 41 14 chr5 12125155 12125228 -140412031 - ID SINE ID -149 75 1 1 677 25 0 0 0 chr5 12128605 12128630 -140408629 + AT_rich Low_complexity Low_complexity 1 25 0 1 677 501 17 0 0 chr5 12128871 12128929 -140408330 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 677 508 231 143 9 chr5 12130092 12130197 -140407062 + B3 SINE B2 5 123 -93 1 677 205 135 54 0 chr5 12130210 12130247 -140407012 + A-rich Low_complexity Low_complexity 3 41 0 1 677 360 0 0 0 chr5 12132158 12132198 -140405061 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 677 244 131 0 47 chr5 12133270 12133334 -140403925 + (TTTG)n Simple_repeat Simple_repeat 4 64 0 1 677 325 282 0 0 chr5 12133696 12133767 -140403492 + ID4_ SINE ID 11 81 -2 1 677 1872 176 84 47 chr5 12134286 12134716 -140402543 - RLTR41 LTR ERV1 0 446 1 1 677 195 279 16 32 chr5 12134760 12134823 -140402436 - MIRm SINE MIR -169 107 46 1 677 470 276 9 0 chr5 12135684 12135800 -140401459 + MER58B DNA MER1_type 222 338 -3 1 677 578 189 141 151 chr5 12136115 12136314 -140400945 - MTD LTR MaLR 0 419 223 1 677 2403 224 21 136 chr5 12136380 12136834 -140400425 - RMER6D LTR ERVK -25 695 337 2 677 369 0 0 0 chr5 12136834 12136875 -140400384 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 677 2403 224 21 136 chr5 12136875 12137176 -140400083 - RMER6D LTR ERVK -384 336 27 2 677 430 240 30 0 chr5 12137171 12137271 -140399988 - MTD LTR MaLR -295 124 22 1 677 663 78 0 0 chr5 12137277 12137380 -140399879 + (CAAAC)n Simple_repeat Simple_repeat 3 105 0 2 677 213 156 0 22 chr5 12138308 12138354 -140398905 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 2 677 934 340 41 23 chr5 12139751 12140190 -140397069 + MER82 DNA MER2_type 201 647 -6 2 677 1539 169 47 87 chr5 12140216 12140643 -140396616 - RMER17C LTR ERVK 0 410 1 2 677 1313 129 10 10 chr5 12141439 12141642 -140395617 - RLTR23 LTR ERV1 0 430 228 2 677 1147 75 0 0 chr5 12141653 12141799 -140395460 + B1_Mm SINE Alu 2 147 0 2 677 180 0 0 0 chr5 12141819 12141839 -140395420 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2 677 460 79 0 0 chr5 12141903 12141966 -140395293 - RLTR23 LTR ERV1 -367 63 1 2 677 5898 141 41 11 chr5 12142450 12143826 -140393433 + L1_Mus4 LINE L1 4751 6165 -471 2 677 2827 59 46 10 chr5 12143826 12144221 -140393038 + RLTR10A LTR ERVK 1 409 -2 2 677 4685 107 36 17 chr5 12144221 12144379 -140392880 + L1_Mus4 LINE L1 6166 6316 -320 2 677 460 126 11 0 chr5 12144385 12144472 -140392787 + Lx LINE L1 6562 6649 -5 2 677 2172 92 119 11 chr5 12144806 12145158 -140392101 + RLTR10 LTR ERVK 1 390 0 2 677 1261 7 0 0 chr5 12145171 12145319 -140391940 + L1Md_A LINE L1 6435 6582 0 2 677 1099 52 0 0 chr5 12145328 12145462 -140391797 - B1_Mus2 SINE Alu -13 134 1 2 677 638 85 0 11 chr5 12147220 12147315 -140389944 + (GAAA)n Simple_repeat Simple_repeat 3 96 0 2 677 189 0 0 0 chr5 12147395 12147416 -140389843 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 677 440 262 13 102 chr5 12147774 12147931 -140389328 + B4A SINE B4 2 144 -148 2 677 23 33 0 0 chr5 12148176 12148206 -140389053 + AT_rich Low_complexity Low_complexity 1 30 0 2 677 345 333 78 0 chr5 12148206 12148386 -140388873 - B3A SINE B2 -3 195 2 2 677 28 71 0 0 chr5 12150666 12150722 -140386537 + AT_rich Low_complexity Low_complexity 1 56 0 2 677 908 301 92 19 chr5 12150817 12151382 -140385877 - L1MA6 LINE L1 -101 6199 5594 2 677 631 194 36 11 chr5 12151413 12151550 -140385709 + Lx9 LINE L1 7101 7226 -418 2 677 2003 136 0 7 chr5 12152027 12152337 -140384922 - RLTR10E LTR ERVK -3 308 1 2 677 843 86 0 0 chr5 12152630 12152747 -140384512 + (GGAA)n Simple_repeat Simple_repeat 3 119 0 2 677 251 284 222 58 chr5 12153269 12153512 -140383747 - MER68 LTR ERVL -258 305 23 2 677 275 71 24 0 chr5 12153819 12153861 -140383398 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 677 285 29 0 0 chr5 12153861 12153894 -140383365 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 677 1396 184 67 4 chr5 12153958 12154226 -140383033 + ORR1B1 LTR MaLR 102 386 -8 2 677 843 35 0 17 chr5 12155103 12155218 -140382041 + BC1_Mm scRNA scRNA 2 114 -38 2 677 825 301 70 15 chr5 12156626 12156896 -140380363 - MTE2a LTR MaLR -2 377 93 2 677 4361 49 4 0 chr5 12156926 12157457 -140379802 - L1Md_F2 LINE L1 0 6582 6050 2 677 880 243 7 65 chr5 12157638 12157929 -140379330 - Lx7 LINE L1 -7 7689 7416 2 677 419 36 0 0 chr5 12157933 12157988 -140379271 + L1_Mus2 LINE L1 6510 6564 -2 2 677 2949 231 42 108 chr5 12157997 12158917 -140378342 - Lx7 LINE L1 -292 7404 6545 2 677 21 0 0 0 chr5 12159563 12159584 -140377675 + AT_rich Low_complexity Low_complexity 1 21 0 2 677 306 73 0 0 chr5 12160921 12160962 -140376297 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 677 381 363 14 22 chr5 12161453 12161591 -140375668 - B4 SINE B4 -151 141 5 2 677 435 38 0 0 chr5 12161591 12161644 -140375615 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 677 367 383 110 57 chr5 12161737 12162000 -140375259 + B4A SINE B4 2 278 -14 2 677 360 0 0 0 chr5 12162007 12162047 -140375212 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 677 225 0 0 0 chr5 12162628 12162653 -140374606 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 677 2968 150 33 6 chr5 12162781 12163264 -140373995 + L1VL4 LINE L1 191 686 -5616 2 677 2831 190 30 16 chr5 12163269 12164305 -140372954 + L1Md_F LINE L1 169 1216 -5325 2 677 2726 12 95 6 chr5 12164305 12164642 -140372617 - IAPLTR1_Mm LTR ERVK 0 367 1 2 677 28728 23 1 1 chr5 12164642 12167913 -140369346 - IAPEz-int LTR ERVK 0 6481 3210 2 677 7188 97 93 43 chr5 12167912 12169156 -140368103 - IAPEz-int LTR ERVK -5168 1313 8 2 677 2726 12 95 6 chr5 12169156 12169493 -140367766 - IAPLTR1_Mm LTR ERVK 0 367 1 2 677 21449 176 7 84 chr5 12169495 12170432 -140366827 + L1_Mus3 LINE L1 1310 2037 -3840 2 677 1231 60 137 37 chr5 12170432 12170622 -140366637 + L1_Mus1 LINE L1 6359 6567 0 2 677 24347 121 11 5 chr5 12170622 12170633 -140366626 + L1_Mus3 LINE L1 2038 2048 -4590 2 677 1135 127 17 0 chr5 12170633 12170806 -140366453 + ORR1B1 LTR MaLR 211 386 -8 2 677 24347 121 11 5 chr5 12170806 12175370 -140361889 + L1_Mus3 LINE L1 2049 6637 -1 2 677 228 184 0 0 chr5 12175576 12175625 -140361634 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 2 677 27 62 0 0 chr5 12176502 12176550 -140360709 + AT_rich Low_complexity Low_complexity 1 48 0 2 677 489 62 0 0 chr5 12177172 12177237 -140360022 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 677 1106 75 11 17 chr5 12177553 12177706 -140359553 + (GGA)n Simple_repeat Simple_repeat 3 156 0 2 677 1477 17 0 11 chr5 12177706 12177888 -140359371 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 677 1106 75 11 17 chr5 12177888 12177911 -140359348 + (GGA)n Simple_repeat Simple_repeat 1 22 0 2 677 195 322 0 0 chr5 12177913 12178000 -140359259 + GA-rich Low_complexity Low_complexity 44 130 0 2 677 481 193 116 27 chr5 12178080 12178192 -140359067 + B1_Mur2 SINE Alu 26 147 -2 2 677 3159 254 146 51 chr5 12179288 12180832 -140356427 - Lx5 LINE L1 -18 7032 5311 2 677 3383 98 82 0 chr5 12180833 12181342 -140355917 - L1_Mus3 LINE L1 -4 6634 6084 2 677 2145 70 0 0 chr5 12181342 12181628 -140355631 + L1_Mus3 LINE L1 5793 6078 -560 2 677 651 26 0 0 chr5 12181628 12181705 -140355554 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 2 677 1666 205 45 64 chr5 12181807 12182277 -140354982 - Lx5 LINE L1 -556 5321 4861 2 677 854 238 90 45 chr5 12182277 12182598 -140354661 - RMER6B LTR ERVK 0 461 67 2 677 315 140 0 17 chr5 12182641 12182699 -140354560 - MYSERV6-int LTR ERVK 0 8959 8903 2 677 3383 217 38 8 chr5 12182708 12183546 -140353713 - Lx5 LINE L1 -2977 2900 2038 2 677 201 39 0 0 chr5 12183568 12183594 -140353665 + (TGG)n Simple_repeat Simple_repeat 1 26 0 2 677 1467 207 12 79 chr5 12183596 12183789 -140353470 - Lx5 LINE L1 -4273 1604 1429 2 677 1205 21 0 7 chr5 12183789 12183933 -140353326 - B1_Mm SINE Alu -2 145 3 2 677 1467 245 46 56 chr5 12183933 12184644 -140352615 - Lx5 LINE L1 -4449 1428 808 2 677 330 67 0 0 chr5 12184886 12184931 -140352328 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 677 420 321 61 0 chr5 12184953 12185084 -140352175 - B3A SINE B2 -57 141 3 2 677 198 0 0 0 chr5 12185218 12185240 -140352019 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 677 821 121 20 20 chr5 12185658 12185806 -140351453 - Lx LINE L1 -694 5960 5827 2 677 987 74 7 7 chr5 12185806 12185955 -140351304 - L1_Mus2 LINE L1 0 6566 6418 2 677 756 176 0 122 chr5 12185955 12185991 -140351268 - Lx LINE L1 -1166 5834 5799 2 677 2228 156 10 5 chr5 12185992 12186392 -140350867 - Lx LINE L1 -384 5493 5092 2 677 1356 111 119 0 chr5 12186402 12186646 -140350613 - RLTR47_MM LTR ERV1 -83 449 177 2 677 3911 170 24 4 chr5 12186662 12187364 -140349895 + Lx LINE L1 5935 6650 -4 2 677 429 332 60 13 chr5 12187958 12188193 -140349066 + Tigger1 DNA MER2_type 14 259 -2159 2 677 960 228 10 14 chr5 12188195 12188404 -140348855 + Lx8 LINE L1 6713 6920 -553 2 677 409 330 54 79 chr5 12188651 12188891 -140348368 + B4 SINE B4 11 244 -48 2 677 201 39 0 0 chr5 12189030 12189056 -140348203 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 678 272 105 35 0 chr5 12189823 12189880 -140347379 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 2 678 324 267 136 19 chr5 12190887 12190990 -140346269 + PB1D7 SINE Alu 6 120 0 2 678 25 31 0 0 chr5 12191420 12191452 -140345807 + AT_rich Low_complexity Low_complexity 1 32 0 2 678 21 36 0 0 chr5 12193377 12193405 -140343854 + AT_rich Low_complexity Low_complexity 1 28 0 2 678 412 184 26 17 chr5 12193444 12193560 -140343699 - Lx9 LINE L1 -1 7643 7527 2 678 842 110 0 14 chr5 12193565 12193703 -140343556 + (TATATG)n Simple_repeat Simple_repeat 2 137 0 2 678 826 239 249 85 chr5 12193703 12193924 -140343335 + MT2A LTR ERVL 1 204 -329 2 678 201 74 0 0 chr5 12193924 12193951 -140343308 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 678 826 239 249 85 chr5 12193951 12194187 -140343072 + MT2A LTR ERVL 205 533 0 2 678 205 182 0 0 chr5 12194229 12194262 -140342997 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2 678 831 159 43 0 chr5 12194262 12194400 -140342859 - B1_Mur4 SINE Alu -1 149 6 2 678 331 252 39 108 chr5 12194302 12194431 -140342828 - MT2B LTR ERVL -345 256 137 2 678 2740 241 31 11 chr5 12194435 12195135 -140342124 - Lx9 LINE L1 -221 7423 6710 2 678 569 340 21 0 chr5 12195142 12195333 -140341926 - B3 SINE B2 -21 195 1 2 678 430 36 84 0 chr5 12195603 12195686 -140341573 + (TTTTG)n Simple_repeat Simple_repeat 1 90 0 2 678 1200 54 0 0 chr5 12195687 12195834 -140341425 - B1_Mm SINE Alu 0 147 1 2 678 226 191 124 31 chr5 12196304 12196401 -140340858 - Lx9 LINE L1 -47 7597 7492 2 678 317 311 118 0 chr5 12196639 12196758 -140340501 + B3A SINE B2 1 133 -65 2 678 547 293 116 109 chr5 12197411 12197859 -140339400 + L3 LINE CR1 3580 4030 -459 2 678 299 136 0 0 chr5 12198441 12198500 -140338759 + Lx LINE L1 6594 6652 -2 2 678 16662 88 17 3 chr5 12198654 12201066 -140336193 - Lx3A LINE L1 -816 5070 2626 2 678 2778 99 22 2 chr5 12201064 12201477 -140335782 + Lx3A LINE L1 5114 5534 -352 2 678 3202 124 8 4 chr5 12201477 12201962 -140335297 + RLTR1C LTR ERV1 1 487 -16 2 678 9477 103 6 7 chr5 12201978 12202711 -140334548 + Lx3A LINE L1 5531 6258 -723 2 678 3350 40 2 0 chr5 12202711 12203106 -140334153 + MTA_Mm LTR MaLR 1 396 0 2 678 9477 105 11 14 chr5 12203106 12203821 -140333438 + Lx3A LINE L1 6259 6971 -10 2 678 339 113 0 0 chr5 12203821 12203874 -140333385 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 2 678 438 20 0 0 chr5 12204748 12204799 -140332460 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 678 1081 301 146 18 chr5 12204803 12205291 -140331968 - Lx8 LINE L1 -144 7329 6780 2 678 1262 289 82 12 chr5 12205301 12205815 -140331444 + Lx8 LINE L1 6243 6792 -681 2 678 186 43 0 0 chr5 12206272 12206295 -140330964 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 678 533 257 18 0 chr5 12207024 12207133 -140330126 + B3A SINE B2 1 111 -87 2 678 2485 259 86 30 chr5 12207226 12208077 -140329182 - Lx6 LINE L1 0 7696 6538 2 678 1583 180 58 165 chr5 12208110 12208642 -140328617 - Lx4A LINE L1 -1 7057 6583 3 678 1104 77 0 0 chr5 12208787 12208930 -140328329 - B1_Mus2 SINE Alu 0 147 5 3 678 6395 103 47 5 chr5 12209412 12210349 -140326910 - RLTR13C1 LTR ERVK 0 983 8 3 678 1583 31 0 15 chr5 12211232 12211428 -140325831 + B2_Mm1a SINE B2 1 193 0 3 678 308 219 114 0 chr5 12211723 12211828 -140325431 + B2_Mm1t SINE B2 77 193 0 3 678 2948 75 28 0 chr5 12212877 12213266 -140323993 + MTB LTR MaLR 1 400 0 3 678 6080 124 33 75 chr5 12213266 12214412 -140322847 + MTB-int LTR MaLR 1 1098 0 3 678 2733 77 54 21 chr5 12214412 12214799 -140322460 + MTB LTR MaLR 1 400 0 3 678 23 0 0 0 chr5 12214826 12214849 -140322410 + AT_rich Low_complexity Low_complexity 1 23 0 3 678 507 315 40 33 chr5 12214884 12215096 -140322163 - B3A SINE B2 -5 211 2 3 678 39 60 0 0 chr5 12215113 12215180 -140322079 + AT_rich Low_complexity Low_complexity 1 67 0 3 678 385 158 24 0 chr5 12215330 12215412 -140321847 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 678 319 100 29 0 chr5 12215707 12215777 -140321482 + (CAAAAA)n Simple_repeat Simple_repeat 3 74 0 3 678 1932 150 37 14 chr5 12216763 12217114 -140320145 + RLTR15 LTR ERVK 1 359 0 3 678 183 42 0 0 chr5 12217162 12217186 -140320073 + (A)n Simple_repeat Simple_repeat 1 24 0 3 678 1960 249 14 27 chr5 12217208 12217721 -140319538 - RLTR20A2 LTR ERVK -4 574 69 3 678 192 40 0 0 chr5 12217745 12217770 -140319489 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 678 1191 112 0 0 chr5 12217950 12218129 -140319130 + (GA)n Simple_repeat Simple_repeat 2 180 0 3 678 220 197 0 43 chr5 12218129 12218146 -140319113 + polypurine Low_complexity Low_complexity 3 19 0 3 678 1146 75 0 0 chr5 12218146 12218293 -140318966 + B1_Mus2 SINE Alu 1 147 0 3 678 220 197 0 43 chr5 12218293 12218344 -140318915 + GA-rich Low_complexity Low_complexity 20 68 0 3 678 1043 122 0 0 chr5 12218950 12219097 -140318162 + B1_Mus1 SINE Alu 2 148 0 3 678 351 145 0 0 chr5 12219097 12219180 -140318079 + (A)n Simple_repeat Simple_repeat 1 83 0 3 678 480 303 12 30 chr5 12219317 12219541 -140317718 + L1ME2 LINE L1 5964 6178 -266 3 678 1663 162 25 66 chr5 12220421 12220881 -140316378 - RMER17C LTR ERVK -519 439 16 3 678 2476 136 151 18 chr5 12220884 12221395 -140315864 - RMER17C-int LTR ERVK 0 3238 2660 3 678 1307 203 299 54 chr5 12221611 12222089 -140315170 - RMER17C-int LTR ERVK -2642 596 2 3 678 1587 169 19 106 chr5 12222097 12222567 -140314692 - RMER17C LTR ERVK -517 441 16 3 678 1653 215 137 31 chr5 12222637 12223084 -140314175 - RMER15 LTR ERVL -45 530 37 3 678 1517 179 25 181 chr5 12223531 12223788 -140313471 + RMER10B LTR ERVL 1 209 -189 3 678 462 36 0 0 chr5 12223788 12223844 -140313415 + (TTC)n Simple_repeat Simple_repeat 2 57 0 3 678 1517 179 25 181 chr5 12223844 12224057 -140313202 + RMER10B LTR ERVL 210 398 0 3 678 22 0 0 0 chr5 12224296 12224318 -140312941 + AT_rich Low_complexity Low_complexity 1 22 0 3 678 1315 141 9 5 chr5 12227836 12228057 -140309202 + RMER17B LTR ERVK 737 958 0 3 678 339 25 0 0 chr5 12228208 12228248 -140309011 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 3 678 262 277 71 106 chr5 12229560 12229673 -140307586 + ORR1D2 LTR MaLR 7 115 -255 3 678 809 193 0 20 chr5 12229972 12230125 -140307134 - B1_Mur4 SINE Alu 0 150 1 3 678 24 0 0 0 chr5 12230326 12230350 -140306909 + AT_rich Low_complexity Low_complexity 1 24 0 3 678 230 302 94 8 chr5 12231873 12231990 -140305269 - Tigger14a DNA MER2_type -63 261 135 3 678 398 84 28 0 chr5 12232084 12232155 -140305104 + (CAGAGA)n Simple_repeat Simple_repeat 2 74 0 3 678 231 333 36 0 chr5 12235191 12235275 -140301984 + ORR1E LTR MaLR 261 347 -12 3 678 3588 205 67 70 chr5 12236244 12236341 -140300918 + RLTR25A LTR ERVK 1 97 -1006 3 678 363 89 0 0 chr5 12236341 12236397 -140300862 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 678 3588 205 67 70 chr5 12236397 12236770 -140300489 + RLTR25A LTR ERVK 98 469 -634 3 678 1339 32 5 83 chr5 12236770 12236974 -140300285 + L1_Mus1 LINE L1 6380 6567 0 3 678 3588 206 78 76 chr5 12236974 12237510 -140299749 + RLTR25A LTR ERVK 446 1027 -1 3 678 336 310 17 8 chr5 12237684 12237801 -140299458 - RLTR22_Mur LTR ERVK -141 1707 1590 3 678 399 208 20 50 chr5 12237838 12237939 -140299320 + Lx8 LINE L1 7255 7352 -121 3 678 353 22 22 0 chr5 12238884 12238930 -140298329 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 3 678 25 31 0 0 chr5 12239930 12239962 -140297297 + AT_rich Low_complexity Low_complexity 1 32 0 3 678 5086 145 63 16 chr5 12239962 12240916 -140296343 - Lx2 LINE L1 -6 6991 5993 3 678 21 57 0 0 chr5 12240993 12241028 -140296231 + AT_rich Low_complexity Low_complexity 1 35 0 3 678 414 0 0 0 chr5 12243096 12243142 -140294117 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 678 312 133 0 0 chr5 12243898 12243958 -140293301 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 678 273 29 0 0 chr5 12243964 12243998 -140293261 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 678 420 20 0 0 chr5 12246657 12246706 -140290553 + (TATG)n Simple_repeat Simple_repeat 2 50 0 3 678 588 258 17 29 chr5 12246850 12247022 -140290237 - Lx8 LINE L1 -1107 6366 6197 3 678 729 281 48 24 chr5 12247043 12247251 -140290008 - B3 SINE B2 0 216 4 3 678 407 206 29 10 chr5 12247518 12247615 -140289644 - Lx8 LINE L1 -363 5937 5838 3 678 583 315 56 56 chr5 12248839 12248851 -140288408 - B3 SINE B2 -1 215 204 3 678 890 106 7 0 chr5 12248851 12248992 -140288267 + (TC)n Simple_repeat Simple_repeat 1 142 0 3 678 583 315 56 56 chr5 12248992 12249194 -140288065 - B3 SINE B2 -13 203 1 3 678 311 294 415 16 chr5 12249351 12249613 -140287646 + MLT1A0 LTR MaLR 43 408 0 3 678 2907 24 0 3 chr5 12249645 12249983 -140287276 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 678 9366 25 2 5 chr5 12249983 12251065 -140286194 - IAPEz-int LTR ERVK 0 6481 5403 3 678 21034 37 36 15 chr5 12251043 12253653 -140283606 - IAPEz-int LTR ERVK -3807 2674 8 3 678 2908 30 0 0 chr5 12253653 12253990 -140283269 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 678 573 328 14 96 chr5 12255082 12255301 -140281958 + B3 SINE B2 3 203 -13 3 678 258 207 0 0 chr5 12255303 12255361 -140281898 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 3 678 305 281 24 0 chr5 12255737 12255819 -140281440 + ID_B1 SINE B4 115 198 -26 3 678 345 24 0 0 chr5 12255825 12255867 -140281392 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 678 423 0 0 0 chr5 12258226 12258273 -140278986 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 678 2202 302 71 23 chr5 12258393 12259324 -140277935 + Lx9 LINE L1 6483 7458 -186 3 678 249 83 0 0 chr5 12259324 12259360 -140277899 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 678 458 0 35 0 chr5 12259370 12259427 -140277832 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 3 678 35 24 0 0 chr5 12259481 12259523 -140277736 + AT_rich Low_complexity Low_complexity 1 42 0 3 678 252 274 10 10 chr5 12260765 12260861 -140276398 + L1MA6 LINE L1 6205 6300 0 3 678 182 308 19 19 chr5 12261197 12261250 -140276009 + L3 LINE CR1 4430 4482 -7 3 678 198 0 0 0 chr5 12261474 12261496 -140275763 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 678 230 81 27 0 chr5 12262645 12262682 -140274577 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 678 282 196 10 42 chr5 12262710 12262806 -140274453 + Lx6 LINE L1 7342 7434 -26 3 678 1103 107 0 6 chr5 12263578 12263757 -140273502 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 3 678 567 43 0 0 chr5 12263757 12263827 -140273432 + (GGAA)n Simple_repeat Simple_repeat 1 70 0 3 678 4129 35 0 0 chr5 12264624 12265112 -140272147 - L1Md_T LINE L1 0 6582 6095 3 678 203 175 0 24 chr5 12265160 12265180 -140272079 + polypyrimidine Low_complexity Low_complexity 22 41 0 3 678 1137 83 0 0 chr5 12265180 12265360 -140271899 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 678 203 175 0 24 chr5 12265360 12265380 -140271879 + polypyrimidine Low_complexity Low_complexity 2 21 0 3 678 1423 283 176 36 chr5 12265380 12266039 -140271220 - Lx6 LINE L1 -62 7398 6648 3 678 259 360 40 49 chr5 12266245 12266569 -140270690 + L1_Mur3 LINE L1 315 635 -7093 3 678 1169 215 68 31 chr5 12266605 12266769 -140270490 + L1_Mur3 LINE L1 947 1122 -6606 3 678 1049 232 5 0 chr5 12266769 12266993 -140270266 + URR1A DNA MER1_type 2 226 0 3 678 1701 197 41 9 chr5 12266993 12267510 -140269749 + L1_Mur3 LINE L1 1123 1655 -4225 3 678 594 211 23 0 chr5 12267521 12267649 -140269610 + L1_Mur3 LINE L1 2225 2355 -3525 3 678 2524 190 25 24 chr5 12267664 12268255 -140269004 - RMER19A LTR ERVK -2 900 1 3 678 3789 199 60 23 chr5 12268255 12269224 -140268035 + L1_Mur3 LINE L1 2365 3369 -2511 3 678 2222 205 26 76 chr5 12269227 12269742 -140267517 + L1_Mur3 LINE L1 4539 5041 -839 3 678 189 0 0 0 chr5 12269742 12269763 -140267496 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 678 2222 205 26 76 chr5 12269763 12269850 -140267409 + L1_Mur3 LINE L1 5042 5111 -769 3 678 15232 164 20 26 chr5 12269855 12273831 -140263428 + L1VL4 LINE L1 362 4311 -1575 3 678 30 0 0 0 chr5 12273878 12273908 -140263351 + AT_rich Low_complexity Low_complexity 1 30 0 3 678 796 217 197 28 chr5 12273914 12274269 -140262990 - Lx9 LINE L1 0 7644 7230 3 678 249 167 0 0 chr5 12275159 12275213 -140262046 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 678 307 320 111 47 chr5 12277020 12277210 -140260049 + L1ME1 LINE L1 1212 1413 -5921 3 678 307 330 47 102 chr5 12277275 12277403 -140259856 + RSINE1 SINE B4 2 122 -43 3 678 251 278 0 0 chr5 12277995 12278049 -140259210 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 678 23 68 0 0 chr5 12278072 12278116 -140259143 + AT_rich Low_complexity Low_complexity 1 44 0 3 678 634 309 101 12 chr5 12278171 12278615 -140258644 + L1ME1 LINE L1 6349 6823 -215 3 678 38517 5 0 0 chr5 12278834 12284206 -140253053 + L1Md_A LINE L1 214 5586 -297 3 678 9046 1 0 0 chr5 12284206 12285202 -140252057 + L1Md_A LINE L1 5587 6582 0 3 678 591 279 33 19 chr5 12285405 12285617 -140251642 - B3 SINE B2 0 216 2 3 678 747 312 100 61 chr5 12285715 12286600 -140250659 - Lx8 LINE L1 -1098 6375 5441 3 678 438 20 0 0 chr5 12286600 12286651 -140250608 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 678 747 297 109 53 chr5 12286651 12286793 -140250466 - Lx8 LINE L1 -440 5440 5286 3 678 360 259 0 12 chr5 12286823 12286905 -140250354 + Lx8 LINE L1 6389 6469 -1004 3 678 1856 126 77 3 chr5 12287013 12287323 -140249936 - Lx2 LINE L1 -3 6994 6662 3 678 3152 134 4 0 chr5 12287323 12287793 -140249466 + Lx2 LINE L1 6173 6644 -353 3 678 732 356 45 14 chr5 12287782 12288135 -140249124 + Lx8 LINE L1 6450 6813 -660 3 678 491 309 0 54 chr5 12288118 12288265 -140248994 + Lx8 LINE L1 6528 6666 -807 3 678 3508 235 101 14 chr5 12288275 12289273 -140247986 - Lx7 LINE L1 -612 7084 6000 3 678 330 26 0 0 chr5 12289367 12289406 -140247853 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 678 823 212 66 42 chr5 12289406 12289647 -140247612 + Lx7 LINE L1 7450 7696 0 3 678 24 0 0 0 chr5 12289648 12289672 -140247587 + AT_rich Low_complexity Low_complexity 1 24 0 3 678 186 43 0 0 chr5 12289931 12289954 -140247305 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 3 678 467 302 91 39 chr5 12290286 12290597 -140246662 - MLT1B LTR MaLR -2 503 60 3 678 7516 45 1 1 chr5 12290649 12291580 -140245679 + L1Md_F2 LINE L1 5652 6582 0 3 678 360 43 0 0 chr5 12291673 12291719 -140245540 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 678 1978 60 0 33 chr5 12292090 12292366 -140244893 + L1Md_F3 LINE L1 6318 6584 0 4 678 223 28 0 53 chr5 12292795 12292823 -140244436 + (CAAAAA)n Simple_repeat Simple_repeat 1 27 0 4 678 231 61 0 0 chr5 12292823 12292856 -140244403 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 4 678 223 28 0 53 chr5 12292856 12292865 -140244394 + (CAAAAA)n Simple_repeat Simple_repeat 4 12 0 4 678 737 268 49 25 chr5 12292957 12293160 -140244099 - Lx6 LINE L1 -4 7456 7249 4 678 306 0 0 0 chr5 12294362 12294396 -140242863 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 4 678 827 291 42 84 chr5 12295720 12295983 -140241276 + B4 SINE B4 40 291 -1 4 678 21 0 0 0 chr5 12296195 12296216 -140241043 + AT_rich Low_complexity Low_complexity 1 21 0 4 678 447 259 18 18 chr5 12296368 12296478 -140240781 - PB1D7 SINE Alu -2 118 9 4 678 254 354 20 29 chr5 12296390 12296492 -140240767 - ID_B1 SINE B4 -48 176 76 4 678 33 25 0 0 chr5 12296711 12296751 -140240508 + AT_rich Low_complexity Low_complexity 1 40 0 4 678 707 119 0 8 chr5 12298922 12299041 -140238218 - Lx LINE L1 -8 6646 6529 4 678 556 343 8 16 chr5 12299098 12299344 -140237915 + Lx8 LINE L1 5381 5624 -256 4 678 754 161 0 30 chr5 12299365 12299499 -140237760 + B1_Mur4 SINE Alu 11 140 -10 4 678 369 0 0 0 chr5 12299500 12299541 -140237718 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 4 678 456 295 105 53 chr5 12299546 12299907 -140237352 + Lx8 LINE L1 5699 6078 -1395 4 678 1109 109 0 0 chr5 12299954 12300110 -140237149 + L1_Mus2 LINE L1 6411 6566 0 4 678 378 0 0 0 chr5 12300183 12300225 -140237034 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 678 677 299 5 14 chr5 12300306 12300520 -140236739 + Lx8 LINE L1 6380 6591 -882 4 678 793 284 30 5 chr5 12300533 12300731 -140236528 + B3 SINE B2 9 211 -5 4 678 233 308 95 9 chr5 12300817 12300922 -140236337 + Lx8 LINE L1 6643 6756 -717 4 678 182 118 0 29 chr5 12302107 12302142 -140235117 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 4 678 234 91 0 0 chr5 12302729 12302762 -140234497 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 4 678 1960 289 49 64 chr5 12303399 12304413 -140232846 + L1_Mur3 LINE L1 4444 5442 -438 4 678 1799 276 85 38 chr5 12304499 12305361 -140231898 + RMER1C Other Other 67 1342 0 4 678 708 357 57 15 chr5 12305465 12305727 -140231532 + B4A SINE B4 2 274 -18 4 678 1331 246 28 39 chr5 12305830 12306186 -140231073 - MTD LTR MaLR -55 364 13 4 678 655 234 127 115 chr5 12306236 12306550 -140230709 - MTD-int LTR MaLR -117 1141 781 4 678 29 47 0 0 chr5 12306672 12306715 -140230544 + AT_rich Low_complexity Low_complexity 1 43 0 4 678 803 207 30 41 chr5 12306765 12307066 -140230193 + Lx3C LINE L1 6721 6976 0 4 678 470 96 0 14 chr5 12307332 12307406 -140229853 + (TA)n Simple_repeat Simple_repeat 1 73 0 4 678 359 204 40 20 chr5 12307533 12307633 -140229626 + Lx9 LINE L1 7532 7633 -11 4 678 247 185 43 138 chr5 12307799 12307893 -140229366 + PB1D10 SINE Alu 33 117 0 4 678 306 107 0 0 chr5 12307908 12307964 -140229295 + (A)n Simple_repeat Simple_repeat 1 56 0 4 678 451 337 0 67 chr5 12308649 12308795 -140228464 + B3A SINE B2 1 137 -61 4 678 3368 33 2 5 chr5 12308795 12309192 -140228067 + MTA_Mm LTR MaLR 1 396 0 4 678 451 337 0 67 chr5 12309192 12309243 -140228016 + B3A SINE B2 138 184 -14 4 678 468 0 0 0 chr5 12309243 12309295 -140227964 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 678 451 337 0 67 chr5 12309295 12309306 -140227953 + B3A SINE B2 185 195 -3 4 678 23 54 0 0 chr5 12310953 12310990 -140226269 + AT_rich Low_complexity Low_complexity 1 37 0 4 678 6863 112 14 17 chr5 12311004 12312094 -140225165 - Lx3A LINE L1 -11 6970 5885 4 678 294 29 0 0 chr5 12312245 12312280 -140224979 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 678 275 72 0 23 chr5 12312426 12312469 -140224790 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 4 678 573 184 0 0 chr5 12312644 12312758 -140224501 + A-rich Low_complexity Low_complexity 1 114 0 4 678 3074 246 53 25 chr5 12313764 12314631 -140222628 - Lx7 LINE L1 -205 7491 6601 4 678 296 275 19 56 chr5 12314646 12314808 -140222451 + (CATATA)n Simple_repeat Simple_repeat 6 161 0 4 678 22 35 0 0 chr5 12315385 12315414 -140221845 + AT_rich Low_complexity Low_complexity 1 29 0 4 678 372 234 0 0 chr5 12316792 12316959 -140220300 + GA-rich Low_complexity Low_complexity 1 167 0 4 678 285 295 26 0 chr5 12318250 12318328 -140218931 + MLT1K LTR MaLR 8 87 -508 4 678 201 263 0 34 chr5 12319187 12319246 -140218013 + MIRc SINE MIR 21 77 -191 4 678 1476 87 15 0 chr5 12319998 12320194 -140217065 + Lx3_Mus LINE L1 6534 6732 -277 4 84 4780 69 6 32 chr5 12320262 12320921 -140216338 + L1_Mus1 LINE L1 5924 6565 -2 4 679 1099 45 0 19 chr5 12322445 12322603 -140214656 + L1Md_F2 LINE L1 6428 6582 0 4 679 23 54 0 0 chr5 12322691 12322728 -140214531 + AT_rich Low_complexity Low_complexity 1 37 0 4 679 414 0 0 0 chr5 12323329 12323375 -140213884 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 679 1437 237 34 27 chr5 12323375 12323783 -140213476 + Lx9 LINE L1 7184 7594 -50 4 679 6119 28 60 3 chr5 12325729 12326876 -140210383 - L1Md_F2 LINE L1 -12 6570 5327 4 679 26 64 0 0 chr5 12326959 12327006 -140210253 + AT_rich Low_complexity Low_complexity 1 47 0 4 679 318 238 51 82 chr5 12329520 12329726 -140207533 + Lx7 LINE L1 5629 5826 -1174 4 679 315 319 57 40 chr5 12329831 12330007 -140207252 - L1MC LINE L1 -1191 4955 4777 4 679 21 36 0 0 chr5 12330117 12330145 -140207114 + AT_rich Low_complexity Low_complexity 1 28 0 4 679 31 44 0 0 chr5 12330714 12330759 -140206500 + AT_rich Low_complexity Low_complexity 1 45 0 4 679 1550 52 0 10 chr5 12330932 12331127 -140206132 + L1_Mus1 LINE L1 6287 6479 -88 4 679 4576 93 9 93 chr5 12331127 12331966 -140205293 + RMER17A LTR ERVK 1 751 0 4 679 475 78 0 25 chr5 12331983 12332062 -140205197 + L1_Mus2 LINE L1 6490 6566 0 4 679 779 282 60 28 chr5 12332712 12332954 -140204305 - MTEb LTR MaLR -9 370 121 4 679 2109 175 32 5 chr5 12332954 12333328 -140203931 + ORR1B1 LTR MaLR 3 386 -8 4 679 207 0 0 0 chr5 12333473 12333496 -140203763 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 679 280 160 0 0 chr5 12334160 12334210 -140203049 - Lx4A LINE L1 0 7058 7009 4 679 1250 273 133 83 chr5 12334639 12335367 -140201892 - Lx5 LINE L1 -321 6729 5990 4 679 494 304 16 16 chr5 12335835 12335962 -140201297 + RSINE1 SINE B4 3 129 -36 4 679 259 269 42 116 chr5 12335962 12336024 -140201235 + B2_Mm2 SINE B2 2 176 -19 4 679 263 342 47 59 chr5 12336044 12336280 -140200979 + L1MCb LINE L1 517 749 -6002 4 679 21 36 0 0 chr5 12336643 12336671 -140200588 + AT_rich Low_complexity Low_complexity 1 28 0 4 679 306 289 13 0 chr5 12336756 12336894 -140200365 + L1MCb LINE L1 917 1082 -5669 4 679 1614 31 0 5 chr5 12337041 12337235 -140200024 - B2_Mm1a SINE B2 0 193 1 4 679 375 374 28 0 chr5 12337437 12337651 -140199608 - Lx9 LINE L1 -203 7441 7222 4 679 279 0 0 0 chr5 12338068 12338099 -140199160 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 4 679 409 294 34 40 chr5 12338190 12338219 -140199040 - ID_B1 SINE B4 -7 217 114 4 679 474 273 18 0 chr5 12338219 12338329 -140198930 - B1_Mur1 SINE Alu -37 112 1 4 679 225 0 0 0 chr5 12338886 12338911 -140198348 + (A)n Simple_repeat Simple_repeat 1 25 0 4 679 23 0 0 0 chr5 12338933 12338956 -140198303 + AT_rich Low_complexity Low_complexity 1 23 0 4 679 369 43 0 0 chr5 12340921 12340968 -140196291 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 679 297 313 96 133 chr5 12341366 12341720 -140195539 - MLT1A LTR MaLR -30 344 4 4 679 1109 258 15 11 chr5 12342994 12343398 -140193861 + RLTR16 LTR ERVK 3 492 -13 4 679 22 0 0 0 chr5 12343952 12343974 -140193285 + AT_rich Low_complexity Low_complexity 1 22 0 4 679 435 280 48 0 chr5 12344051 12344176 -140193083 - ORR1D2 LTR MaLR -239 131 1 4 679 199 395 8 11 chr5 12344184 12344309 -140192950 - MIRm SINE MIR -94 174 54 4 679 213 121 0 0 chr5 12345028 12345061 -140192198 + (GGAAA)n Simple_repeat Simple_repeat 3 35 0 4 679 727 248 143 0 chr5 12345281 12345491 -140191768 - Lx9 LINE L1 -429 7215 6976 4 679 262 263 147 13 chr5 12345561 12345686 -140191573 + B1_Mus1 SINE Alu 8 149 0 4 679 180 143 0 0 chr5 12345754 12345796 -140191463 + (A)n Simple_repeat Simple_repeat 1 42 0 4 679 286 111 32 0 chr5 12347344 12347364 -140189895 + (CAAAAA)n Simple_repeat Simple_repeat 6 25 0 4 679 1100 56 7 27 chr5 12347364 12347502 -140189757 + B1_Mm SINE Alu 1 139 -8 4 679 210 37 0 0 chr5 12347502 12347529 -140189730 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 4 679 286 111 32 0 chr5 12347538 12347580 -140189679 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 4 679 2038 158 6 6 chr5 12348933 12349297 -140187962 - L1_Mm LINE L1 -480 5403 5040 4 679 7453 84 25 5 chr5 12349298 12350525 -140186734 + L1_Mus3 LINE L1 5379 6631 -7 4 679 27 29 0 0 chr5 12350563 12350597 -140186662 + AT_rich Low_complexity Low_complexity 1 34 0 4 679 23 68 0 0 chr5 12352077 12352121 -140185138 + AT_rich Low_complexity Low_complexity 1 44 0 4 679 369 62 0 0 chr5 12353346 12353394 -140183865 + (TTA)n Simple_repeat Simple_repeat 1 48 0 4 679 316 333 62 22 chr5 12353631 12353794 -140183465 + B3A SINE B2 5 178 -20 4 679 447 73 0 0 chr5 12353794 12353862 -140183397 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 679 204 40 0 0 chr5 12353862 12353886 -140183373 + (GA)n Simple_repeat Simple_repeat 2 26 0 4 679 316 333 62 22 chr5 12353886 12353899 -140183360 + B3A SINE B2 179 188 -10 4 679 193 358 61 44 chr5 12353998 12354112 -140183147 + MER5B DNA MER1_type 4 119 -59 4 679 360 205 12 24 chr5 12354606 12354691 -140182568 - RMER6C LTR ERVK 0 690 607 4 679 794 248 47 75 chr5 12355566 12355854 -140181405 - MT2B LTR ERVL -55 546 217 5 679 575 185 71 43 chr5 12355854 12355995 -140181264 + B1_Mur3 SINE Alu 2 146 -3 5 679 355 266 128 135 chr5 12355995 12356199 -140181060 - MT2B LTR ERVL -259 216 20 5 679 526 248 8 8 chr5 12356219 12356353 -140180906 - B1_Mus2 SINE Alu -13 134 1 5 679 2246 200 60 104 chr5 12356593 12357263 -140179996 - RMER6C LTR ERVK -50 640 1 4 679 191 36 36 0 chr5 12357504 12357532 -140179727 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 679 1130 65 0 0 chr5 12358793 12358932 -140178327 + B1_Mm SINE Alu 2 140 -7 5 679 306 0 0 0 chr5 12358934 12358968 -140178291 + (A)n Simple_repeat Simple_repeat 1 34 0 5 679 198 208 0 0 chr5 12359346 12359399 -140177860 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 5 679 702 331 77 12 chr5 12359513 12359761 -140177498 + B4A SINE B4 27 290 -2 5 679 335 105 18 0 chr5 12360117 12360174 -140177085 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 679 364 276 199 8 chr5 12360359 12360625 -140176634 + Charlie1 DNA MER1_type 1938 2254 -527 5 679 246 171 53 0 chr5 12361428 12361504 -140175755 + (TTA)n Simple_repeat Simple_repeat 2 81 0 5 679 21 0 0 0 chr5 12361595 12361616 -140175643 + AT_rich Low_complexity Low_complexity 1 21 0 5 679 253 299 118 56 chr5 12362169 12362364 -140174895 + Arthur1 DNA Tip100 3456 3662 -285 5 679 232 96 0 55 chr5 12364550 12364605 -140172654 + A-rich Low_complexity Low_complexity 3 54 0 5 679 21 36 0 0 chr5 12365475 12365503 -140171756 + AT_rich Low_complexity Low_complexity 1 28 0 5 679 890 216 122 4 chr5 12366801 12367047 -140170212 - L1_Mur3 LINE L1 -54 5826 5552 5 679 919 191 117 62 chr5 12367049 12367356 -140169903 + Lx7 LINE L1 7373 7696 0 5 679 22 70 0 0 chr5 12368220 12368263 -140168996 + AT_rich Low_complexity Low_complexity 1 43 0 5 679 1302 296 60 13 chr5 12368475 12368923 -140168336 + Lx7 LINE L1 6848 7316 -380 5 679 306 0 0 0 chr5 12368967 12369001 -140168258 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 679 459 52 0 0 chr5 12370270 12370328 -140166931 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 679 22 0 0 0 chr5 12371286 12371308 -140165951 + AT_rich Low_complexity Low_complexity 1 22 0 5 679 11872 97 10 55 chr5 12371556 12372144 -140165115 + L1_Mur1 LINE L1 2840 3425 -2461 5 679 1035 66 73 0 chr5 12372144 12372281 -140164978 + B1_Mus2 SINE Alu 1 147 0 5 679 11872 97 10 55 chr5 12372281 12373692 -140163567 + L1_Mur1 LINE L1 3426 4749 -1137 5 679 315 65 0 0 chr5 12373957 12374003 -140163256 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 5 679 184 340 0 0 chr5 12374428 12374478 -140162781 + L2 LINE L2 1210 1259 -2160 5 679 288 133 0 0 chr5 12374603 12374663 -140162596 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 679 306 154 19 0 chr5 12374663 12374715 -140162544 - HAL1-3A_ME LINE L1 -824 2034 1982 5 679 214 369 35 18 chr5 12374774 12374887 -140162372 + L2 LINE L2 1559 1673 -1746 5 679 1177 319 42 34 chr5 12375582 12375991 -140161268 - Lx8 LINE L1 -200 7273 6862 5 679 383 270 72 11 chr5 12376277 12376457 -140160802 + L1M5 LINE L1 2199 2389 -3826 5 679 498 33 0 0 chr5 12376701 12376761 -140160498 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 679 285 319 0 0 chr5 12377079 12377148 -140160111 - RSINE1 SINE B4 -29 136 68 5 679 507 321 7 22 chr5 12377391 12377528 -140159731 - RSINE1 SINE B4 -29 136 2 5 679 190 316 92 0 chr5 12379878 12379976 -140157283 + MIR3 SINE MIR 93 199 -9 5 679 270 0 0 0 chr5 12382730 12382760 -140154499 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 679 249 57 0 0 chr5 12382762 12382797 -140154462 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 5 679 308 127 18 0 chr5 12386409 12386464 -140150795 + (TTG)n Simple_repeat Simple_repeat 2 57 0 5 679 1099 97 0 0 chr5 12387860 12388005 -140149254 + B1_Mus1 SINE Alu 1 145 -3 5 679 195 69 0 0 chr5 12388006 12388035 -140149224 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 5 679 597 330 24 28 chr5 12389121 12389533 -140147726 + Lx9 LINE L1 7071 7473 0 5 679 242 196 0 0 chr5 12390237 12390283 -140146976 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 5 679 639 263 67 21 chr5 12390301 12390495 -140146764 - B3 SINE B2 -13 203 1 5 679 241 259 26 44 chr5 12391113 12391226 -140146033 + (CATATA)n Simple_repeat Simple_repeat 4 114 0 5 679 369 292 9 54 chr5 12391409 12391521 -140145738 + PB1D10 SINE Alu 10 116 -1 5 679 481 303 35 96 chr5 12391954 12391996 -140145263 + ID SINE ID 38 77 -147 5 679 564 15 0 0 chr5 12391996 12392061 -140145198 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 679 481 303 35 96 chr5 12392061 12392215 -140145044 + ID_B1 SINE B4 78 222 -2 5 679 1427 307 31 36 chr5 12394113 12394698 -140142561 + Lx7 LINE L1 6256 6837 -859 5 679 22 0 0 0 chr5 12396469 12396491 -140140768 + AT_rich Low_complexity Low_complexity 1 22 0 5 679 476 309 14 49 chr5 12396854 12396997 -140140262 + ID_B1 SINE B4 86 223 -1 5 679 227 274 13 27 chr5 12397028 12397103 -140140156 + GA-rich Low_complexity Low_complexity 1 74 0 5 679 228 288 98 60 chr5 12397287 12397420 -140139839 + MER68 LTR ERVL 418 555 -8 5 679 320 318 47 0 chr5 12397315 12397422 -140139837 + MER21B LTR ERV1 459 570 -293 5 679 1431 288 18 63 chr5 12397699 12398204 -140139055 - Lx9 LINE L1 -892 6752 6271 5 679 22 0 0 0 chr5 12399681 12399703 -140137556 + AT_rich Low_complexity Low_complexity 1 22 0 5 679 191 88 29 0 chr5 12399802 12399836 -140137423 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 5 679 315 0 0 0 chr5 12401225 12401260 -140135999 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 5 679 213 114 0 28 chr5 12402450 12402486 -140134773 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 679 194 341 87 43 chr5 12402555 12402785 -140134474 + MIR SINE MIR 23 262 0 5 679 228 365 20 50 chr5 12403798 12403899 -140133360 + MamRep137 DNA TcMar? 1 98 -346 5 679 349 355 76 40 chr5 12403936 12404159 -140133100 + MamRep137 DNA TcMar? 111 341 -103 5 679 229 211 19 0 chr5 12404212 12404264 -140132995 + ID4 SINE ID 18 70 -13 5 679 213 154 0 0 chr5 12405077 12405116 -140132143 + T-rich Low_complexity Low_complexity 1 39 0 5 679 252 0 0 0 chr5 12405341 12405369 -140131890 + (A)n Simple_repeat Simple_repeat 1 28 0 5 679 630 26 0 0 chr5 12407925 12408001 -140129258 + (TG)n Simple_repeat Simple_repeat 1 76 0 5 679 323 23 0 22 chr5 12408174 12408219 -140129040 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 679 579 66 0 0 chr5 12409737 12409813 -140127446 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 679 392 236 0 20 chr5 12410855 12411002 -140126257 + (CA)n Simple_repeat Simple_repeat 2 145 0 5 679 655 320 5 27 chr5 12411636 12411822 -140125437 + B3 SINE B2 28 209 -7 5 679 252 0 0 0 chr5 12412049 12412077 -140125182 + (TGG)n Simple_repeat Simple_repeat 1 28 0 5 679 306 393 18 0 chr5 12412142 12412254 -140125005 + RSINE1 SINE B4 34 147 -18 5 679 25 51 0 0 chr5 12412525 12412564 -140124695 + AT_rich Low_complexity Low_complexity 1 39 0 5 679 832 320 98 70 chr5 12413337 12413890 -140123369 + MLT2B4 LTR ERVL 18 553 -1 5 679 3789 126 23 8 chr5 12414260 12414954 -140122305 - Lx3_Mus LINE L1 -803 6206 5503 5 679 2863 114 24 0 chr5 12414942 12415363 -140121896 + Lx3A LINE L1 6226 6656 -325 5 679 387 0 0 0 chr5 12415364 12415407 -140121852 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 679 339 25 0 0 chr5 12415426 12415466 -140121793 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 679 26 0 0 0 chr5 12415830 12415856 -140121403 + AT_rich Low_complexity Low_complexity 1 26 0 5 679 236 255 0 0 chr5 12416511 12416558 -140120701 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 679 629 57 9 9 chr5 12416799 12416905 -140120354 + L1Md_F2 LINE L1 6477 6582 0 5 679 622 340 62 15 chr5 12417836 12418173 -140119086 - MER119 DNA MER1_type -175 408 56 5 679 231 171 155 14 chr5 12418454 12418525 -140118734 + Lx7 LINE L1 7616 7696 0 5 679 817 282 32 0 chr5 12419347 12419535 -140117724 + B3 SINE B2 2 195 -21 5 679 21 0 0 0 chr5 12419734 12419755 -140117504 + AT_rich Low_complexity Low_complexity 1 21 0 5 679 224 300 0 0 chr5 12420424 12420474 -140116785 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 679 201 74 0 0 chr5 12421047 12421074 -140116185 + (CTTG)n Simple_repeat Simple_repeat 4 30 0 5 679 925 110 7 7 chr5 12421074 12421228 -140116031 + (TTCC)n Simple_repeat Simple_repeat 4 158 0 5 679 268 236 77 22 chr5 12421441 12421532 -140115727 + B4A SINE B4 4 99 -193 5 679 417 169 0 0 chr5 12421610 12421693 -140115566 + (ATG)n Simple_repeat Simple_repeat 1 83 0 5 679 207 207 71 18 chr5 12421897 12422010 -140115249 + (TTATA)n Simple_repeat Simple_repeat 3 121 0 5 679 25 0 0 0 chr5 12422044 12422069 -140115190 + AT_rich Low_complexity Low_complexity 1 25 0 5 679 225 233 53 40 chr5 12422540 12422616 -140114643 - L3 LINE CR1 -1916 2573 2497 5 679 26 30 0 0 chr5 12422652 12422685 -140114574 + AT_rich Low_complexity Low_complexity 1 33 0 5 679 31 68 0 0 chr5 12424078 12424137 -140113122 + AT_rich Low_complexity Low_complexity 1 59 0 5 679 396 59 0 0 chr5 12424168 12424219 -140113040 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 679 385 330 62 68 chr5 12425320 12425775 -140111484 + L2 LINE L2 2027 2478 -941 5 679 256 133 33 0 chr5 12426117 12426177 -140111082 + (TA)n Simple_repeat Simple_repeat 1 62 0 5 679 348 222 12 12 chr5 12426943 12427025 -140110234 - MTE2a LTR MaLR -20 359 278 5 679 384 22 0 0 chr5 12427658 12427703 -140109556 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 679 567 0 0 0 chr5 12428209 12428272 -140108987 + (TTTTC)n Simple_repeat Simple_repeat 2 64 0 5 679 1013 66 7 0 chr5 12428272 12428409 -140108850 - B1_Mm SINE Alu -9 138 1 5 679 433 255 37 86 chr5 12428411 12428574 -140108685 + Lx6 LINE L1 7137 7291 -169 5 679 207 69 0 0 chr5 12428944 12428973 -140108286 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 679 268 372 60 7 chr5 12429192 12429341 -140107918 - Tigger5 DNA MER2_type -2164 242 86 6 679 546 63 0 0 chr5 12431710 12431789 -140105470 + (GA)n Simple_repeat Simple_repeat 2 80 0 6 679 224 211 0 0 chr5 12431791 12431843 -140105416 + (CAGAGA)n Simple_repeat Simple_repeat 1 52 0 6 679 484 299 21 7 chr5 12432062 12432207 -140105052 + RSINE1 SINE B4 3 149 -16 6 679 414 0 0 0 chr5 12432211 12432257 -140105002 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 679 339 44 0 0 chr5 12432257 12432301 -140104958 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 679 297 0 0 0 chr5 12433764 12433797 -140103462 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 679 778 313 114 4 chr5 12434181 12434653 -140102606 + L1MA4 LINE L1 5395 5918 -382 6 679 29 70 0 0 chr5 12435383 12435440 -140101819 + AT_rich Low_complexity Low_complexity 1 57 0 6 679 1285 259 148 25 chr5 12437209 12437855 -140099404 + Lx9 LINE L1 6386 7110 -534 6 679 9113 219 54 14 chr5 12437851 12441076 -140096183 - Lx6 LINE L1 -192 7268 3626 6 679 33 0 0 0 chr5 12441155 12441188 -140096071 + AT_rich Low_complexity Low_complexity 1 33 0 6 679 183 42 0 0 chr5 12441479 12441503 -140095756 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 679 474 289 88 122 chr5 12443382 12443768 -140093491 + MTE2a LTR MaLR 7 379 0 6 679 272 180 44 22 chr5 12443856 12443947 -140093312 + (TA)n Simple_repeat Simple_repeat 2 94 0 6 679 266 341 94 39 chr5 12444001 12444129 -140093130 + B1_Mur2 SINE Alu 3 137 -12 6 679 432 270 125 16 chr5 12444143 12444271 -140092988 + B3A SINE B2 10 151 -47 6 679 204 214 0 0 chr5 12444280 12444322 -140092937 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 679 21 57 0 0 chr5 12444352 12444387 -140092872 + AT_rich Low_complexity Low_complexity 1 35 0 6 679 775 328 50 25 chr5 12444653 12444825 -140092434 + B4 SINE B4 39 214 -78 6 679 198 0 0 0 chr5 12444825 12444847 -140092412 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 679 775 328 50 25 chr5 12444847 12444915 -140092344 + B4 SINE B4 215 284 -8 6 679 333 215 0 0 chr5 12444939 12445032 -140092227 + (CA)n Simple_repeat Simple_repeat 2 94 0 6 679 208 147 0 0 chr5 12445032 12445066 -140092193 + (TA)n Simple_repeat Simple_repeat 1 34 0 6 679 31 0 0 0 chr5 12445071 12445102 -140092157 + AT_rich Low_complexity Low_complexity 1 31 0 6 679 937 260 244 26 chr5 12445276 12445319 -140091940 - MT2A LTR ERVL -21 512 461 6 679 372 125 0 0 chr5 12445319 12445383 -140091876 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 679 937 260 244 26 chr5 12445383 12445683 -140091576 - MT2A LTR ERVL -73 460 94 6 679 397 210 55 63 chr5 12445718 12445845 -140091414 - MT2A LTR ERVL -407 126 1 6 679 30 27 0 0 chr5 12445930 12445967 -140091292 + AT_rich Low_complexity Low_complexity 1 37 0 6 679 1158 69 0 0 chr5 12446088 12446232 -140091027 - B1_Mm SINE Alu -3 144 1 6 679 288 0 0 0 chr5 12446428 12446460 -140090799 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 679 225 279 15 0 chr5 12449012 12449080 -140088179 + ID4 SINE ID 2 70 -13 6 679 807 189 62 6 chr5 12449103 12449279 -140087980 + B2_Mm2 SINE B2 1 186 -9 6 679 26 30 0 0 chr5 12449360 12449393 -140087866 + AT_rich Low_complexity Low_complexity 1 33 0 6 679 25 0 0 0 chr5 12449471 12449496 -140087763 + AT_rich Low_complexity Low_complexity 1 25 0 6 679 385 308 0 19 chr5 12449927 12450033 -140087226 + PB1D10 SINE Alu 11 114 -3 6 679 549 0 0 0 chr5 12450043 12450104 -140087155 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 6 679 207 111 0 27 chr5 12450666 12450703 -140086556 + (TTA)n Simple_repeat Simple_repeat 1 36 0 6 679 3527 133 60 0 chr5 12450704 12451266 -140085993 - Lx3C LINE L1 -9 6967 6372 6 679 317 365 47 63 chr5 12451270 12451460 -140085799 + B4A SINE B4 2 188 -104 6 679 623 0 0 0 chr5 12451460 12451530 -140085729 + L1_Mm LINE L1 4578 4647 -1236 6 84 4737 6 0 0 chr5 12451530 12452059 -140085200 + L1Md_A LINE L1 6054 6582 0 6 680 25 65 0 0 chr5 12453020 12453066 -140084193 + AT_rich Low_complexity Low_complexity 1 46 0 6 680 1058 87 0 0 chr5 12453582 12453720 -140083539 + B1_Mus1 SINE Alu 1 138 -10 6 680 276 30 0 0 chr5 12453720 12453753 -140083506 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 680 325 75 0 0 chr5 12454254 12454307 -140082952 + Lx LINE L1 6595 6647 -7 6 680 495 0 0 0 chr5 12454970 12455025 -140082234 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 680 363 269 27 36 chr5 12456148 12456260 -140080999 + ID_B1 SINE B4 108 218 -6 6 680 250 369 12 92 chr5 12456264 12456428 -140080831 + B4A SINE B4 24 174 -118 6 680 215 234 0 0 chr5 12456553 12456600 -140080659 + GA-rich Low_complexity Low_complexity 2 48 0 6 680 1089 89 0 0 chr5 12456764 12456910 -140080349 + B1_Mus1 SINE Alu 2 147 -1 6 680 261 0 0 0 chr5 12457501 12457530 -140079729 + (A)n Simple_repeat Simple_repeat 1 29 0 6 680 301 215 0 27 chr5 12458840 12458950 -140078309 + (CATATA)n Simple_repeat Simple_repeat 3 109 0 6 680 405 0 0 0 chr5 12458950 12458995 -140078264 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 680 335 199 38 0 chr5 12459505 12459580 -140077679 - MIR SINE MIR -103 173 86 6 680 24 0 0 0 chr5 12460388 12460412 -140076847 + AT_rich Low_complexity Low_complexity 1 24 0 6 680 486 229 40 16 chr5 12461007 12461131 -140076128 - Lx9 LINE L1 -522 7122 6996 6 680 1433 232 69 21 chr5 12461131 12461553 -140075706 + Lx9 LINE L1 7203 7644 0 6 680 495 318 49 43 chr5 12461621 12461805 -140075454 + B3A SINE B2 1 185 -13 6 680 724 277 70 20 chr5 12461831 12462030 -140075229 - B3 SINE B2 -6 210 2 6 680 524 313 136 16 chr5 12462192 12462634 -140074625 + L1MC LINE L1 5314 5808 -525 6 680 28 79 0 0 chr5 12462761 12462824 -140074435 + AT_rich Low_complexity Low_complexity 1 63 0 6 680 25 0 0 0 chr5 12462985 12463010 -140074249 + AT_rich Low_complexity Low_complexity 1 25 0 6 680 322 316 100 46 chr5 12463922 12464161 -140073098 + L1M3e LINE L1 13 264 -6766 6 680 847 221 136 0 chr5 12464678 12464877 -140072382 - URR1A DNA MER1_type 0 226 1 6 680 265 325 95 45 chr5 12464877 12464911 -140072348 + CYRA11_Mm Unknown Y-chromosome 371 415 -202 6 680 272 148 0 16 chr5 12464912 12464974 -140072285 + GA-rich Low_complexity Low_complexity 3 63 0 6 680 714 55 0 0 chr5 12464974 12465065 -140072194 + (GA)n Simple_repeat Simple_repeat 2 92 0 6 680 478 330 78 13 chr5 12465067 12465439 -140071820 + L1MA6 LINE L1 5742 6137 -163 6 680 23 0 0 0 chr5 12465640 12465663 -140071596 + AT_rich Low_complexity Low_complexity 1 23 0 6 680 231 297 44 26 chr5 12466253 12466367 -140070892 - PB1D7 SINE Alu 0 120 5 6 680 356 0 0 22 chr5 12466493 12466538 -140070721 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 680 651 367 23 33 chr5 12466639 12466935 -140070324 - B4A SINE B4 0 292 1 6 680 319 197 52 13 chr5 12468983 12469060 -140068199 - HAL1-3A_ME LINE L1 -831 2027 1948 6 680 240 35 0 0 chr5 12469997 12470026 -140067233 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 6 680 826 198 6 13 chr5 12470026 12470185 -140067074 - B2_Mm2 SINE B2 -34 161 4 6 680 341 276 0 13 chr5 12470383 12470460 -140066799 - B1F SINE Alu -8 141 66 6 680 291 114 0 0 chr5 12470511 12470555 -140066704 + (A)n Simple_repeat Simple_repeat 1 44 0 6 680 267 338 50 50 chr5 12471841 12472000 -140065259 - LTR78 LTR ERV1 -446 858 700 6 680 591 293 24 73 chr5 12472148 12472166 -140065093 - B3A SINE B2 0 198 184 6 680 369 0 0 0 chr5 12472166 12472207 -140065052 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 680 591 293 24 73 chr5 12472207 12472394 -140064865 - B3A SINE B2 -15 183 3 6 680 591 27 0 0 chr5 12473843 12473916 -140063343 + (CA)n Simple_repeat Simple_repeat 2 74 0 6 680 50 80 0 0 chr5 12475983 12476096 -140061163 + AT_rich Low_complexity Low_complexity 1 113 0 6 680 1689 192 22 6 chr5 12477400 12477756 -140059503 + L1_Mur3 LINE L1 4144 4505 -1375 6 680 928 254 43 8 chr5 12477768 12478002 -140059257 - Lx6 LINE L1 -52 7408 7167 6 680 2617 188 19 10 chr5 12479819 12480341 -140056918 - RLTR11A LTR ERVK -1 527 1 6 680 393 70 0 0 chr5 12480485 12480542 -140056717 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 680 204 200 0 0 chr5 12480661 12480701 -140056558 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 680 1092 108 0 1 chr5 12481020 12481913 -140055346 + (GGA)n Simple_repeat Simple_repeat 1 892 0 6 680 1387 222 42 9 chr5 12482717 12483049 -140054210 + RLTR11A LTR ERVK 36 378 -150 6 680 417 196 18 97 chr5 12484090 12484102 -140053157 + MT2B LTR ERVL 154 156 -445 6 680 775 84 27 0 chr5 12484102 12484233 -140053026 + B1_Mm SINE Alu 2 150 0 6 680 567 173 50 0 chr5 12484233 12484372 -140052887 + GA-rich Low_complexity Low_complexity 4 149 0 6 680 339 356 7 15 chr5 12484372 12484509 -140052750 - B1_Mur1 SINE Alu -13 136 1 6 680 378 351 22 7 chr5 12485161 12485296 -140051963 + ID_B1 SINE B4 81 217 -7 6 680 274 345 0 18 chr5 12485771 12485883 -140051376 + PB1D7 SINE Alu 5 114 -6 6 680 207 0 0 0 chr5 12486454 12486477 -140050782 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 6 680 229 323 131 0 chr5 12486499 12486598 -140050661 + PB1 SINE Alu 13 124 -3 6 680 186 71 0 0 chr5 12487053 12487081 -140050178 + (A)n Simple_repeat Simple_repeat 1 28 0 6 680 27 62 0 0 chr5 12489424 12489472 -140047787 + AT_rich Low_complexity Low_complexity 1 48 0 6 680 277 24 48 0 chr5 12489477 12489519 -140047740 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 680 960 9 0 0 chr5 12489581 12489688 -140047571 + L1Md_A LINE L1 5480 5586 -297 6 680 8800 15 0 0 chr5 12489688 12490684 -140046575 + L1Md_A LINE L1 5587 6582 0 6 680 717 138 8 31 chr5 12490684 12490703 -140046556 + L1_Mur1 LINE L1 5590 5606 -280 7 680 531 300 0 28 chr5 12490760 12490904 -140046355 + ID_B1 SINE B4 85 224 0 7 680 271 250 12 106 chr5 12490965 12491050 -140046209 + ID4 SINE ID 5 81 -2 7 680 232 291 12 60 chr5 12491375 12491459 -140045800 + B4 SINE B4 3 82 -210 7 680 522 0 0 0 chr5 12491649 12491707 -140045552 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 680 25 83 0 0 chr5 12492961 12493021 -140044238 + AT_rich Low_complexity Low_complexity 1 60 0 7 680 2730 214 37 9 chr5 12493080 12493626 -140043633 - Lx5 LINE L1 -119 6931 6371 7 680 227 31 31 0 chr5 12493630 12493662 -140043597 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 7 680 7800 104 24 8 chr5 12493669 12495830 -140041429 - L1_Mus1 LINE L1 0 6567 4633 7 680 324 338 12 83 chr5 12495835 12496003 -140041256 - B3 SINE B2 -3 213 58 7 680 257 295 10 102 chr5 12496561 12496659 -140040600 + MT2B2 LTR ERVL 148 236 -348 7 680 385 314 73 0 chr5 12496582 12496706 -140040553 + B1F SINE Alu 5 137 -12 7 680 21 36 0 0 chr5 12496845 12496873 -140040386 + AT_rich Low_complexity Low_complexity 1 28 0 7 680 1821 231 33 21 chr5 12499500 12499986 -140037273 - RLTR16 LTR ERVK -12 493 2 7 680 240 349 35 38 chr5 12500128 12500268 -140036991 + MIRb SINE MIR 55 195 -73 1 680 2379 204 47 61 chr5 12500280 12500939 -140036320 + Lx7 LINE L1 7047 7696 0 2 680 228 184 0 0 chr5 12501016 12501065 -140036194 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 680 446 286 23 23 chr5 12501194 12501323 -140035936 + ID_B1 SINE B4 85 213 -11 4 680 304 350 28 28 chr5 12501323 12501338 -140035921 + B1F1 SINE Alu 4 147 -2 5 680 1067 61 7 0 chr5 12501349 12501497 -140035762 + (GGGA)n Simple_repeat Simple_repeat 4 152 0 6 680 332 182 11 0 chr5 12501660 12501748 -140035511 + (TG)n Simple_repeat Simple_repeat 2 90 0 7 680 450 111 14 0 chr5 12502280 12502352 -140034907 - Lx7 LINE L1 -93 7603 7531 8 680 257 125 18 0 chr5 12502361 12502417 -140034842 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 9 680 578 221 36 58 chr5 12502852 12502991 -140034268 - B1_Mus1 SINE Alu -9 139 4 1 680 281 242 9 157 chr5 12502905 12503013 -140034246 - MT2B LTR ERVL -361 240 149 1 680 1191 94 0 0 chr5 12503860 12504040 -140033219 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 680 234 105 0 0 chr5 12504186 12504224 -140033035 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1 680 589 256 0 0 chr5 12504227 12504360 -140032899 - B1_Mus2 SINE Alu -6 141 9 1 680 233 358 86 48 chr5 12504396 12504644 -140032615 + B4A SINE B4 1 288 -4 1 680 351 0 0 0 chr5 12504657 12504696 -140032563 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 680 486 0 0 0 chr5 12504697 12504751 -140032508 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 680 758 308 57 20 chr5 12504805 12505050 -140032209 + B4A SINE B4 4 257 -35 1 680 258 32 0 0 chr5 12505164 12505195 -140032064 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 1 680 972 49 0 0 chr5 12505195 12505316 -140031943 + (TTTC)n Simple_repeat Simple_repeat 4 125 0 2 680 385 280 51 6 chr5 12505317 12505475 -140031784 - Lx3C LINE L1 -18 6958 6794 2 680 257 131 0 16 chr5 12505564 12505626 -140031633 + (CAAAA)n Simple_repeat Simple_repeat 1 61 0 2 680 384 270 0 63 chr5 12507497 12507671 -140029588 + CT-rich Low_complexity Low_complexity 5 167 0 2 680 393 22 0 0 chr5 12508380 12508426 -140028833 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 680 182 359 11 32 chr5 12508547 12508642 -140028617 - MIRm SINE MIR -116 160 68 2 680 4434 157 65 5 chr5 12509784 12510618 -140026641 - Lx4B LINE L1 -632 6426 5537 2 680 1436 69 37 0 chr5 12510644 12510832 -140026427 - B2_Mm2 SINE B2 0 195 1 2 680 324 0 0 0 chr5 12510832 12510868 -140026391 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 680 351 0 0 0 chr5 12511302 12511341 -140025918 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 680 1028 54 0 0 chr5 12511553 12511682 -140025577 + B1_Mm SINE Alu 11 139 -8 3 680 369 62 46 0 chr5 12511682 12511747 -140025512 + (CAA)n Simple_repeat Simple_repeat 2 69 0 3 680 824 156 6 25 chr5 12511763 12511921 -140025338 + B2_Mm1t SINE B2 36 190 -3 3 680 613 332 22 6 chr5 12512144 12512441 -140024818 - MTE2b LTR MaLR -37 342 11 3 680 369 0 0 0 chr5 12514010 12514051 -140023208 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 680 840 48 0 0 chr5 12515684 12515789 -140021470 + (TCTA)n Simple_repeat Simple_repeat 1 105 0 3 680 1236 52 11 17 chr5 12515797 12515975 -140021284 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 3 680 222 37 0 0 chr5 12515975 12516002 -140021257 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 680 774 196 0 81 chr5 12516031 12516192 -140021067 - B1_Mur3 SINE Alu -1 148 1 3 680 452 306 8 24 chr5 12516198 12516322 -140020937 - B1F SINE Alu -1 148 27 3 680 408 279 6 140 chr5 12516496 12516667 -140020592 - B1_Mur2 SINE Alu 0 149 2 4 680 545 318 50 0 chr5 12516725 12516923 -140020336 + B3 SINE B2 4 211 -5 4 680 2956 21 0 0 chr5 12517090 12517427 -140019832 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 680 21212 11 1 2 chr5 12517427 12519789 -140017470 - IAPEz-int LTR ERVK 0 6481 4123 4 680 932 73 24 0 chr5 12519791 12519914 -140017345 - IAPEz-int LTR ERVK -2770 4910 4785 4 680 1834 115 4 4 chr5 12519911 12520173 -140017086 - IAPEz-int LTR ERVK -5183 2497 2236 4 680 442 66 0 32 chr5 12520162 12520225 -140017034 - IAPEz-int LTR ERVK -5062 1419 1359 4 680 4213 64 49 2 chr5 12520225 12520813 -140016446 - IAPEz-int LTR ERVK -5819 662 8 4 680 2889 21 9 0 chr5 12520813 12521147 -140016112 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 680 726 23 0 0 chr5 12522338 12522426 -140014833 + (TC)n Simple_repeat Simple_repeat 1 88 0 4 680 221 292 0 15 chr5 12523236 12523302 -140013957 - B1F SINE Alu 0 149 85 4 680 220 329 72 65 chr5 12523346 12523499 -140013760 - MIR SINE MIR 0 262 109 4 680 31 0 0 0 chr5 12524520 12524551 -140012708 + AT_rich Low_complexity Low_complexity 1 31 0 4 680 310 143 0 54 chr5 12526796 12526870 -140010389 + (CATA)n Simple_repeat Simple_repeat 3 72 0 4 680 23 54 0 0 chr5 12527541 12527578 -140009681 + AT_rich Low_complexity Low_complexity 1 37 0 4 680 201 147 0 0 chr5 12528167 12528201 -140009058 + (GGA)n Simple_repeat Simple_repeat 3 36 0 5 680 230 116 0 23 chr5 12528207 12528251 -140009008 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 5 680 604 287 35 0 chr5 12528934 12529108 -140008151 - B3A SINE B2 -18 180 1 5 680 22 0 0 0 chr5 12529270 12529292 -140007967 + AT_rich Low_complexity Low_complexity 1 22 0 5 680 582 28 0 0 chr5 12529748 12529820 -140007439 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 680 236 196 0 0 chr5 12530559 12530610 -140006649 + A-rich Low_complexity Low_complexity 1 51 0 5 680 699 294 12 0 chr5 12530637 12530797 -140006462 + ID_B1 SINE B4 60 221 -3 5 680 22 56 0 0 chr5 12531098 12531134 -140006125 + AT_rich Low_complexity Low_complexity 1 36 0 5 680 187 273 45 0 chr5 12531465 12531531 -140005728 - L3 LINE CR1 -877 3612 3544 5 680 996 224 98 39 chr5 12531658 12531833 -140005426 - RMER17C LTR ERVK 0 410 228 5 680 866 74 0 54 chr5 12531833 12532018 -140005241 + (GGGAGA)n Simple_repeat Simple_repeat 5 179 0 6 680 996 224 98 39 chr5 12532018 12532228 -140005031 - RMER17C LTR ERVK -183 227 3 5 680 382 206 15 0 chr5 12532291 12532359 -140004900 + RSINE1 SINE B4 72 140 -25 6 680 23 0 0 0 chr5 12532384 12532407 -140004852 + AT_rich Low_complexity Low_complexity 1 23 0 6 680 1556 175 42 7 chr5 12532993 12533303 -140003956 + ORR1A4 LTR MaLR 1 321 -8 6 680 29 0 0 0 chr5 12535247 12535276 -140001983 + AT_rich Low_complexity Low_complexity 1 29 0 6 680 20265 99 14 5 chr5 12535276 12539020 -139998239 - L1_Mus1 LINE L1 -4 6563 2784 6 680 226 284 0 0 chr5 12539306 12539380 -139997879 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 6 680 364 311 7 29 chr5 12539434 12539570 -139997689 + B1_Mur1 SINE Alu 2 134 -15 6 680 35 71 0 0 chr5 12539678 12539748 -139997511 + AT_rich Low_complexity Low_complexity 1 70 0 6 680 695 168 0 14 chr5 12541558 12541697 -139995562 + T-rich Low_complexity Low_complexity 4 140 0 6 680 792 0 0 0 chr5 12541720 12541808 -139995451 + (TCTCC)n Simple_repeat Simple_repeat 1 88 0 7 680 1177 77 12 0 chr5 12541808 12541978 -139995281 + (TTTC)n Simple_repeat Simple_repeat 3 174 0 7 680 40812 10 0 6 chr5 12542688 12549101 -139988158 - L1Md_A LINE L1 0 6582 214 7 680 403 335 120 39 chr5 12549145 12549428 -139987831 - MLT2C1 LTR ERVL -51 346 41 7 680 339 25 0 0 chr5 12549570 12549610 -139987649 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 680 713 321 0 21 chr5 12549614 12549808 -139987451 - B3A SINE B2 -7 191 2 7 680 309 309 105 43 chr5 12549938 12550248 -139987011 - ORR1E LTR MaLR 0 379 1 7 680 309 322 75 58 chr5 12550327 12550568 -139986691 - L1MC LINE L1 -2043 5839 5595 7 680 21 57 0 0 chr5 12552439 12552474 -139984785 + AT_rich Low_complexity Low_complexity 1 35 0 7 680 1269 189 18 0 chr5 12552561 12552783 -139984476 + URR1A DNA MER1_type 1 226 0 7 680 638 288 48 103 chr5 12553996 12554286 -139982973 + B4A SINE B4 1 274 -18 8 680 301 335 131 5 chr5 12554830 12555028 -139982231 - RMER15 LTR ERVL -53 522 300 8 680 1977 78 11 0 chr5 12555720 12556019 -139981240 - L1Md_F2 LINE L1 -203 6364 6058 8 680 507 323 103 25 chr5 12556114 12556590 -139980669 - L1MB1 LINE L1 0 6168 5656 8 680 272 321 37 9 chr5 12556936 12557043 -139980216 - MIR3 SINE MIR -6 202 93 8 680 584 312 7 0 chr5 12557372 12557510 -139979749 - ID_B1 SINE B4 -2 222 84 8 680 234 222 0 0 chr5 12558225 12558279 -139978980 + A-rich Low_complexity Low_complexity 5 58 0 8 680 654 104 0 0 chr5 12558286 12558382 -139978877 + (GA)n Simple_repeat Simple_repeat 2 97 0 8 680 28 0 0 0 chr5 12558472 12558500 -139978759 + AT_rich Low_complexity Low_complexity 1 28 0 8 680 235 291 23 11 chr5 12558563 12558650 -139978609 + (TG)n Simple_repeat Simple_repeat 1 88 0 8 680 611 310 42 45 chr5 12558654 12558861 -139978398 - B4A SINE B4 -4 288 83 9 680 441 0 0 0 chr5 12558861 12558910 -139978349 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 9 680 611 310 42 45 chr5 12558910 12558989 -139978270 - B4A SINE B4 -210 82 4 9 680 22 0 0 0 chr5 12561228 12561250 -139976009 + AT_rich Low_complexity Low_complexity 1 22 0 9 680 348 51 75 12 chr5 12561613 12561693 -139975566 + (CAAAA)n Simple_repeat Simple_repeat 3 87 0 9 680 29 47 0 0 chr5 12562889 12562932 -139974327 + AT_rich Low_complexity Low_complexity 1 43 0 9 680 695 192 256 0 chr5 12563870 12564042 -139973217 + B3 SINE B2 1 216 0 9 680 233 200 0 0 chr5 12564224 12564269 -139972990 + (TCTG)n Simple_repeat Simple_repeat 3 47 0 9 680 255 190 0 0 chr5 12564270 12564328 -139972931 + (TA)n Simple_repeat Simple_repeat 2 59 0 9 680 228 235 0 0 chr5 12564437 12564505 -139972754 + (TA)n Simple_repeat Simple_repeat 2 69 0 9 680 22 0 0 0 chr5 12565637 12565659 -139971600 + AT_rich Low_complexity Low_complexity 1 22 0 9 680 324 227 25 0 chr5 12567091 12567210 -139970049 + (TCTA)n Simple_repeat Simple_repeat 4 125 0 1 680 592 121 0 33 chr5 12567305 12567425 -139969834 + CT-rich Low_complexity Low_complexity 5 120 0 1 680 273 292 10 92 chr5 12568863 12568961 -139968298 - PB1D10 SINE Alu -13 104 15 1 680 266 227 60 96 chr5 12568974 12569057 -139968202 - ID4_ SINE ID -1 82 3 1 680 510 234 0 0 chr5 12571398 12571492 -139965767 + B1F SINE Alu 8 101 -48 1 680 1149 64 0 0 chr5 12571967 12572108 -139965151 - B1_Mus2 SINE Alu -6 141 1 1 680 216 0 0 0 chr5 12572308 12572332 -139964927 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1 680 248 328 112 10 chr5 12572951 12573148 -139964111 + L1MA6 LINE L1 6035 6251 -49 1 680 421 217 8 102 chr5 12574692 12574820 -139962439 - B1_Mur2 SINE Alu -1 148 33 1 680 228 35 0 0 chr5 12574834 12574863 -139962396 + (TC)n Simple_repeat Simple_repeat 1 29 0 1 680 603 40 0 0 chr5 12576783 12576857 -139960402 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 680 203 0 37 0 chr5 12576858 12576885 -139960374 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 680 545 312 59 0 chr5 12576928 12577130 -139960129 + B3 SINE B2 1 214 -2 1 680 276 149 0 0 chr5 12577130 12577177 -139960082 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 680 546 16 0 0 chr5 12577178 12577241 -139960018 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 1 680 21 0 0 0 chr5 12578184 12578205 -139959054 + AT_rich Low_complexity Low_complexity 1 21 0 1 680 658 286 60 33 chr5 12578460 12578644 -139958615 + B3A SINE B2 3 191 -7 1 680 1032 51 14 7 chr5 12578877 12579015 -139958244 + B1_Mus1 SINE Alu 1 139 -9 1 680 236 0 67 22 chr5 12579015 12579060 -139958199 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 680 26 88 0 0 chr5 12580850 12580918 -139956341 + AT_rich Low_complexity Low_complexity 1 68 0 1 680 469 0 0 0 chr5 12580987 12581044 -139956215 - L1_Mus2 LINE L1 -1 6565 6509 1 680 24 32 0 0 chr5 12581390 12581421 -139955838 + AT_rich Low_complexity Low_complexity 1 31 0 1 681 987 201 50 41 chr5 12582990 12583208 -139954051 + URR1A DNA MER1_type 5 224 -2 1 681 239 79 26 0 chr5 12583746 12583784 -139953475 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 681 1282 62 11 0 chr5 12584525 12584702 -139952557 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 681 3859 61 60 11 chr5 12589269 12589803 -139947456 - LTRIS2 LTR ERV1 0 564 5 1 681 259 279 21 41 chr5 12590029 12590126 -139947133 - MLT1A LTR MaLR -22 352 258 1 681 24 0 0 0 chr5 12592135 12592159 -139945100 + AT_rich Low_complexity Low_complexity 1 24 0 1 681 216 86 0 0 chr5 12593715 12593750 -139943509 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 681 642 169 0 0 chr5 12593848 12593966 -139943293 + CT-rich Low_complexity Low_complexity 3 120 0 1 681 1431 184 166 117 chr5 12594837 12595553 -139941706 + RMER6C LTR ERVK 1 718 -38 1 681 1070 59 0 35 chr5 12595556 12595697 -139941562 + B1_Mus2 SINE Alu 3 138 -9 1 681 596 200 62 0 chr5 12595735 12595865 -139941394 + RMER6D LTR ERVK 582 719 -1 1 681 5863 126 4 4 chr5 12597161 12598586 -139938673 - L1_Mus4 LINE L1 -256 6380 4950 1 681 720 113 0 0 chr5 12598584 12598690 -139938569 + L1_Mus4 LINE L1 4861 4966 -917 1 681 304 197 0 14 chr5 12598920 12598992 -139938267 + L1M3 LINE L1 5712 5782 -386 1 681 263 374 41 31 chr5 12599214 12599410 -139937849 - MT2A LTR ERVL -105 428 231 1 681 303 259 0 12 chr5 12599422 12599504 -139937755 + (CAT)n Simple_repeat Simple_repeat 3 83 0 1 681 498 17 0 0 chr5 12599851 12599910 -139937349 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 1 681 495 295 89 11 chr5 12600253 12600524 -139936735 + L1MA6 LINE L1 5801 6092 -208 1 681 21754 161 24 7 chr5 12600577 12601966 -139935293 - Lx LINE L1 -5 6649 5241 1 681 833 29 10 0 chr5 12601966 12602070 -139935189 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 1 681 21754 172 15 14 chr5 12602070 12605732 -139931527 - Lx LINE L1 -646 5240 1580 1 681 1064 285 53 3 chr5 12605733 12606015 -139931244 - MTD LTR MaLR -123 296 1 1 681 366 80 0 0 chr5 12606070 12606120 -139931139 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 681 183 156 0 0 chr5 12607442 12607474 -139929785 + T-rich Low_complexity Low_complexity 1 32 0 1 681 1082 101 0 0 chr5 12607476 12607624 -139929635 - B1_Mus1 SINE Alu 0 148 1 1 681 853 353 29 20 chr5 12607754 12608104 -139929155 - MLT1A0 LTR MaLR 0 365 13 1 681 523 326 35 20 chr5 12608517 12608714 -139928545 - RMER30 DNA MER1_type -1 201 2 1 681 263 348 58 29 chr5 12608925 12609064 -139928195 - MER34-int LTR ERV1 -5809 2398 2256 1 681 283 305 12 0 chr5 12609242 12609324 -139927935 - B3A SINE B2 -115 83 1 1 681 387 0 0 0 chr5 12609328 12609371 -139927888 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 1 681 3500 272 84 56 chr5 12609393 12610916 -139926343 - Lx5 LINE L1 -18 7032 5485 1 681 1956 164 27 41 chr5 12610916 12611284 -139925975 + RLTR19A LTR ERVK 1 363 -133 1 681 1412 183 2 43 chr5 12611284 12611618 -139925641 - Lx5 LINE L1 -2381 3759 3436 1 681 5512 193 53 12 chr5 12611664 12613466 -139923793 - Lx5 LINE L1 -343 6707 4818 1 681 447 210 40 0 chr5 12613456 12613556 -139923703 - Lx5 LINE L1 -1857 4020 3917 1 681 3242 218 142 63 chr5 12613555 12614968 -139922291 - Lx5 LINE L1 -3027 2850 1327 1 681 1022 305 56 26 chr5 12616578 12617116 -139920143 - L1MA7 LINE L1 -62 6229 5676 1 681 918 206 108 0 chr5 12617417 12617621 -139919638 + URR1A DNA MER1_type 1 226 0 1 681 1599 6 0 0 chr5 12617876 12618056 -139919203 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 681 615 139 0 0 chr5 12618058 12618159 -139919100 + (TCC)n Simple_repeat Simple_repeat 3 103 0 1 681 1077 236 44 8 chr5 12618764 12619012 -139918247 + Lx5 LINE L1 6794 7050 0 1 681 29 0 0 0 chr5 12619881 12619910 -139917349 + AT_rich Low_complexity Low_complexity 1 29 0 1 681 422 77 0 0 chr5 12619910 12619975 -139917284 - L1_Mus3 LINE L1 -7 6631 6567 1 681 3004 158 27 13 chr5 12619975 12620528 -139916731 - RLTR31_Mm LTR ERVK 0 561 1 1 681 3027 214 38 53 chr5 12620557 12621343 -139915916 - RMER3D-int LTR ERVK -25 2817 2045 1 681 3795 67 0 0 chr5 12621343 12621819 -139915440 + L1Md_F2 LINE L1 6094 6569 -13 1 681 3027 214 38 53 chr5 12621819 12621876 -139915383 - RMER3D-int LTR ERVK -798 2044 1987 1 681 1374 174 12 16 chr5 12621863 12622120 -139915139 - RMER3D-int LTR ERVK -1050 1792 1537 1 681 2746 229 28 68 chr5 12622155 12623236 -139914023 - RMER3D-int LTR ERVK -1309 1533 165 1 681 31746 81 7 6 chr5 12623386 12628369 -139908890 + L1Md_F2 LINE L1 628 5586 -297 1 681 7451 63 14 8 chr5 12628369 12629345 -139907914 + L1Md_F2 LINE L1 5587 6568 -14 1 681 2661 173 4 0 chr5 12629371 12629850 -139907409 - L1_Mm LINE L1 -221 5662 5182 1 681 281 329 23 23 chr5 12631902 12631989 -139905270 + MER91A DNA Tip100 67 153 -43 1 681 23 33 0 0 chr5 12632850 12632880 -139904379 + AT_rich Low_complexity Low_complexity 1 30 0 1 681 207 114 0 0 chr5 12632956 12632991 -139904268 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 681 576 0 0 0 chr5 12633625 12633689 -139903570 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 681 412 239 84 17 chr5 12635817 12635996 -139901263 + Charlie5 DNA MER1_type 2418 2608 -16 1 681 350 205 0 12 chr5 12636532 12636616 -139900643 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 681 180 111 0 0 chr5 12638455 12638482 -139898777 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 681 1411 287 106 44 chr5 12639659 12640502 -139896757 - L1MA8 LINE L1 -35 6256 5362 1 681 282 222 32 32 chr5 12640500 12640593 -139896666 - Lx6 LINE L1 -22 7438 7346 1 681 246 285 96 38 chr5 12640648 12640805 -139896454 - L1MA8 LINE L1 -813 5330 5165 1 681 207 69 0 0 chr5 12641305 12641334 -139895925 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 681 327 318 40 15 chr5 12641386 12641584 -139895675 - L1MA8 LINE L1 -1162 4981 4779 1 681 1051 88 0 20 chr5 12641975 12642113 -139895146 + B1_Mus1 SINE Alu 2 137 -11 1 681 342 49 32 16 chr5 12642113 12642175 -139895084 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 1 681 1051 88 0 20 chr5 12642175 12642186 -139895073 + B1_Mus1 SINE Alu 138 148 0 1 681 186 128 0 0 chr5 12644095 12644134 -139893125 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1 681 207 0 0 0 chr5 12644207 12644230 -139893029 + (T)n Simple_repeat Simple_repeat 1 23 0 1 681 432 0 0 0 chr5 12644792 12644840 -139892419 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 681 992 9 0 8 chr5 12645219 12645337 -139891922 + (TTC)n Simple_repeat Simple_repeat 2 118 0 1 681 26 0 0 0 chr5 12645645 12645671 -139891588 + AT_rich Low_complexity Low_complexity 1 26 0 1 681 762 171 0 0 chr5 12646106 12646282 -139890977 + GA-rich Low_complexity Low_complexity 1 176 0 1 681 283 290 90 0 chr5 12646921 12647021 -139890238 + MTEb LTR MaLR 1 109 -270 1 681 21 71 0 0 chr5 12648047 12648089 -139889170 + AT_rich Low_complexity Low_complexity 1 42 0 1 681 27 0 0 0 chr5 12648160 12648187 -139889072 + AT_rich Low_complexity Low_complexity 1 27 0 1 681 398 75 15 0 chr5 12648229 12648296 -139888963 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 1 681 1140 68 0 0 chr5 12648298 12648444 -139888815 - B1_Mm SINE Alu -1 146 1 1 681 288 0 0 0 chr5 12649347 12649379 -139887880 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 681 50 65 0 0 chr5 12649995 12650087 -139887172 + AT_rich Low_complexity Low_complexity 1 92 0 1 681 30 0 0 0 chr5 12650287 12650317 -139886942 + AT_rich Low_complexity Low_complexity 1 30 0 1 681 1984 235 4 19 chr5 12650324 12650789 -139886470 - Lx9 LINE L1 -414 7230 6773 1 681 770 268 106 15 chr5 12650789 12651119 -139886140 + Lx9 LINE L1 7221 7580 -64 1 681 230 325 12 36 chr5 12651851 12651934 -139885325 - LTR88b LTR Gypsy? 0 837 757 1 681 204 149 0 0 chr5 12652272 12652319 -139884940 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 681 2340 179 57 23 chr5 12652562 12653032 -139884227 + RLTR28 LTR ERVL 1 486 -38 1 681 567 78 0 0 chr5 12655236 12655313 -139881946 + (GGA)n Simple_repeat Simple_repeat 3 79 0 1 681 1894 150 48 31 chr5 12656507 12656864 -139880395 - L1_Mus3 LINE L1 0 6638 6276 1 681 384 40 0 0 chr5 12658235 12658285 -139878974 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 681 1072 94 0 0 chr5 12659758 12659896 -139877363 + B1_Mus1 SINE Alu 2 139 -9 1 681 302 0 26 0 chr5 12659896 12659934 -139877325 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 681 300 111 0 0 chr5 12659953 12659998 -139877261 + (AGGGGG)n Simple_repeat Simple_repeat 1 45 0 1 681 186 125 0 0 chr5 12659992 12660014 -139877245 + (GGAA)n Simple_repeat Simple_repeat 1 22 0 2 681 1392 56 0 0 chr5 12660014 12660192 -139877067 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2 681 186 125 0 0 chr5 12660192 12660201 -139877058 + (GGAA)n Simple_repeat Simple_repeat 3 11 0 2 681 1602 243 33 13 chr5 12660283 12660675 -139876584 - MuRRS4-int LTR ERV1 -1117 3946 3547 2 681 328 314 0 24 chr5 12661360 12661484 -139875775 + MMERGLN-int LTR ERV1 5418 5538 -2018 2 681 974 316 19 26 chr5 12661747 12662199 -139875060 + RLTR6-int LTR ERV1 7088 7727 -51 2 681 2441 78 139 0 chr5 12662283 12662670 -139874589 + RLTR47_MM LTR ERV1 1 441 -91 2 681 25 0 0 0 chr5 12663062 12663087 -139874172 + AT_rich Low_complexity Low_complexity 1 25 0 2 681 396 88 0 0 chr5 12663165 12663222 -139874037 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 681 239 79 26 0 chr5 12663716 12663754 -139873505 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2 681 2459 240 100 96 chr5 12666898 12667475 -139869784 - RMER17B LTR ERVK 0 958 440 2 681 495 48 0 0 chr5 12667475 12667537 -139869722 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 681 2459 240 100 96 chr5 12667537 12667909 -139869350 - RMER17B LTR ERVK -519 439 6 2 681 475 78 26 0 chr5 12668337 12668414 -139868845 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 2 681 2160 120 26 110 chr5 12668431 12668860 -139868399 - RLTR9C LTR ERVK 0 393 1 2 681 297 0 0 0 chr5 12668932 12668965 -139868294 + (TTA)n Simple_repeat Simple_repeat 3 35 0 2 681 4061 138 85 15 chr5 12669528 12669864 -139867395 - RMER17D2 LTR ERVK 0 809 470 2 681 465 19 0 0 chr5 12669864 12669918 -139867341 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 681 4061 138 85 15 chr5 12669918 12670337 -139866922 - RMER17D2 LTR ERVK -340 469 1 2 681 4670 67 3 20 chr5 12672805 12673446 -139863813 - L1Md_F2 LINE L1 -1 6581 5952 2 681 956 150 0 0 chr5 12673456 12673603 -139863656 + B1_Mur4 SINE Alu 1 147 -3 2 681 1347 79 26 0 chr5 12674445 12674634 -139862625 - B2_Mm2 SINE B2 -1 194 1 2 681 189 0 0 0 chr5 12675045 12675066 -139862193 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 681 30 27 0 0 chr5 12675183 12675220 -139862039 + AT_rich Low_complexity Low_complexity 1 37 0 2 681 186 118 0 0 chr5 12676191 12676225 -139861034 + (T)n Simple_repeat Simple_repeat 1 34 0 2 681 335 333 48 0 chr5 12677347 12677473 -139859786 - B1F1 SINE Alu -1 148 17 2 681 31 88 0 0 chr5 12677970 12678050 -139859209 + AT_rich Low_complexity Low_complexity 1 80 0 2 681 484 272 23 11 chr5 12678188 12678363 -139858896 - Lx9 LINE L1 -149 7495 7319 2 681 7463 156 50 6 chr5 12678386 12679675 -139857584 + Lx4A LINE L1 5631 6976 -82 2 681 1434 299 102 33 chr5 12679691 12680261 -139856998 - Lx9 LINE L1 -533 7111 6498 2 681 180 0 0 0 chr5 12680261 12680281 -139856978 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 681 1434 299 102 33 chr5 12680281 12680377 -139856882 - Lx9 LINE L1 -1147 6497 6400 2 681 333 345 115 0 chr5 12680393 12680558 -139856701 - B3A SINE B2 -13 185 2 2 681 21 0 0 0 chr5 12681801 12681822 -139855437 + AT_rich Low_complexity Low_complexity 1 21 0 2 681 1721 75 4 0 chr5 12682105 12682366 -139854893 - L1_Mus1 LINE L1 0 6567 6331 2 681 228 67 0 0 chr5 12682722 12682752 -139854507 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 681 23 0 0 0 chr5 12682998 12683021 -139854238 + AT_rich Low_complexity Low_complexity 1 23 0 2 681 1735 278 65 17 chr5 12683449 12683910 -139853349 - Lx6 LINE L1 -56 7404 6922 2 681 334 182 0 0 chr5 12683908 12683963 -139853296 + Tigger2b DNA MER2_type 390 444 -282 2 681 198 0 0 0 chr5 12684039 12684061 -139853198 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2 681 1219 34 0 13 chr5 12684213 12684362 -139852897 - B1_Mm SINE Alu 0 147 1 2 681 23 0 0 0 chr5 12684458 12684481 -139852778 + AT_rich Low_complexity Low_complexity 1 23 0 2 681 3940 173 42 0 chr5 12684606 12685345 -139851914 - Lx2 LINE L1 -3 6994 6225 2 681 477 62 0 0 chr5 12686790 12686854 -139850405 + B1_Mus2 SINE Alu 84 147 0 2 681 183 42 0 0 chr5 12686857 12686881 -139850378 + (A)n Simple_repeat Simple_repeat 1 24 0 2 681 342 175 0 0 chr5 12687220 12687300 -139849959 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 681 2883 85 19 5 chr5 12688510 12688925 -139848334 + BGLII LTR ERVK 1 421 0 2 681 187 226 20 46 chr5 12690270 12690335 -139846924 - MIRc SINE MIR -83 179 114 2 681 222 274 0 0 chr5 12693016 12693067 -139844192 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 2 681 1577 64 0 0 chr5 12693077 12693280 -139843979 - L1_Mus1 LINE L1 0 6567 6365 2 681 25 51 0 0 chr5 12694060 12694099 -139843160 + AT_rich Low_complexity Low_complexity 1 39 0 2 681 495 130 0 0 chr5 12694274 12694374 -139842885 + (GA)n Simple_repeat Simple_repeat 1 100 0 2 681 1667 226 144 117 chr5 12694617 12694748 -139842511 - RMER1B Other Other -3 1063 921 2 681 243 0 0 0 chr5 12694748 12694775 -139842484 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 681 1667 230 137 115 chr5 12694775 12695589 -139841670 - RMER1B Other Other -146 920 151 2 681 987 320 65 22 chr5 12696139 12696602 -139840657 + HERVL74-int LTR ERVL 2885 3367 -2318 2 681 661 262 70 20 chr5 12697182 12697381 -139839878 + B3 SINE B2 5 213 -3 2 681 587 340 59 11 chr5 12697487 12697859 -139839400 + HERVL74-int LTR ERVL 3899 4288 -1397 2 681 910 333 48 3 chr5 12700347 12700660 -139836599 - MTE2b LTR MaLR -1 378 52 2 681 1664 210 48 19 chr5 12700723 12701096 -139836163 - Lx4B LINE L1 -19 7039 6656 2 681 2834 186 50 30 chr5 12701101 12701678 -139835581 + Lx4B LINE L1 6073 6661 -397 2 681 311 307 0 119 chr5 12702691 12702850 -139834409 + Arthur1A DNA Tip100 30 169 -8 2 681 422 237 113 0 chr5 12704197 12704294 -139832965 - B3 SINE B2 -106 110 3 2 681 424 330 77 33 chr5 12705444 12705947 -139831312 + L1_Rod LINE L1 7 378 -6794 2 681 287 266 11 102 chr5 12706007 12706183 -139831076 - L1_Rod LINE L1 -2033 3814 3655 2 681 233 222 19 0 chr5 12706184 12706238 -139831021 + CT-rich Low_complexity Low_complexity 3 57 0 2 681 1635 237 45 62 chr5 12706250 12706664 -139830595 - L1_Rod LINE L1 -2189 3658 3237 2 681 3258 68 18 7 chr5 12706664 12707105 -139830154 + L1_Mus2 LINE L1 6121 6566 0 2 681 1635 237 45 62 chr5 12707105 12707284 -139829975 - L1_Rod LINE L1 -2611 3236 3075 2 681 616 259 28 14 chr5 12707329 12707474 -139829785 - B1_Mm SINE Alu 0 147 1 2 681 1659 243 71 73 chr5 12707474 12708259 -139829000 - L1_Rod LINE L1 -2768 3079 2296 2 681 21 36 0 0 chr5 12708452 12708480 -139828779 + AT_rich Low_complexity Low_complexity 1 28 0 2 681 218 75 0 130 chr5 12708539 12708585 -139828674 + T-rich Low_complexity Low_complexity 1 40 0 2 681 211 367 0 0 chr5 12708875 12708954 -139828305 + B3A SINE B2 1 79 -119 2 681 1532 23 0 0 chr5 12709091 12709265 -139827994 - B2_Mm1a SINE B2 -18 175 2 2 681 407 320 69 49 chr5 12709415 12709661 -139827598 + MER77 LTR ERVL 53 303 -304 2 681 260 296 28 14 chr5 12709971 12710043 -139827216 + MLT1E2 LTR MaLR 140 212 -415 2 681 321 237 84 34 chr5 12710105 12710284 -139826975 - L1_Mur3 LINE L1 -1999 3881 3694 2 681 238 271 100 0 chr5 12710346 12710416 -139826843 + Lx9 LINE L1 7240 7316 -328 2 681 683 264 63 66 chr5 12710414 12710795 -139826464 - L1_Rod LINE L1 -2127 3720 3341 2 681 345 81 0 36 chr5 12712065 12712128 -139825131 - B1_Mus2 SINE Alu 0 147 60 2 681 22 70 0 0 chr5 12712560 12712603 -139824656 + AT_rich Low_complexity Low_complexity 1 43 0 2 85 3892 138 14 12 chr5 12713507 12714167 -139823092 - Lx3B LINE L1 -3 6970 6310 2 682 1905 154 7 58 chr5 12714167 12714581 -139822678 + Lx3B LINE L1 5882 6274 -699 2 682 699 92 0 0 chr5 12714806 12714915 -139822344 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 682 2870 62 51 0 chr5 12715241 12715614 -139821645 - L1_Mus1 LINE L1 0 6567 6176 2 682 475 260 185 63 chr5 12715645 12715850 -139821409 + MTD LTR MaLR 170 399 -20 2 682 21 36 0 0 chr5 12715851 12715879 -139821380 + AT_rich Low_complexity Low_complexity 1 28 0 2 682 675 38 75 0 chr5 12716091 12716197 -139821062 + (TCTCCC)n Simple_repeat Simple_repeat 3 116 0 2 682 370 322 111 44 chr5 12716294 12716700 -139820559 - L1MA6 LINE L1 -189 6111 5679 2 682 312 169 0 90 chr5 12716823 12716901 -139820358 + Lx7 LINE L1 5074 5144 -736 2 682 1653 98 156 99 chr5 12716901 12717133 -139820126 + RLTR9C LTR ERVK 1 263 -130 2 682 5990 44 0 1 chr5 12717133 12717865 -139819394 + L1Md_T LINE L1 5852 6582 0 2 682 1653 98 156 99 chr5 12717865 12718004 -139819255 + RLTR9C LTR ERVK 264 393 0 2 682 3999 194 70 74 chr5 12718006 12718628 -139818631 + MMETn-int LTR ERVK 3 563 -4281 2 682 215 31 31 0 chr5 12718628 12718660 -139818599 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 682 3999 173 50 81 chr5 12718660 12719268 -139817991 + MMETn-int LTR ERVK 564 1163 -3681 2 682 556 193 9 27 chr5 12719301 12719413 -139817846 + ETnERV2-int LTR ERVK 2496 2605 -4801 2 682 909 128 6 24 chr5 12719417 12719585 -139817674 + RLTR13D1 LTR ERVK 486 650 -156 2 682 2423 119 9 3 chr5 12719637 12719983 -139817276 + SSU-rRNA_Hsa rRNA rRNA 529 876 -993 2 682 3998 187 24 42 chr5 12720086 12722117 -139815142 + MMETn-int LTR ERVK 2356 4085 -3321 2 682 421 153 21 2 chr5 12722322 12722408 -139814851 + ETnERV2-int LTR ERVK 7331 7402 -4 2 682 2014 142 52 79 chr5 12722408 12722812 -139814447 + RLTR9C LTR ERVK 1 393 0 2 682 2545 208 65 94 chr5 12722812 12723262 -139813997 + Lx7 LINE L1 5140 5598 -282 2 682 2713 72 3 27 chr5 12723262 12723634 -139813625 + L1_Mus2 LINE L1 6204 6566 0 2 682 2972 234 107 55 chr5 12723634 12724661 -139812598 + Lx7 LINE L1 5597 6649 -1047 2 682 2393 253 94 28 chr5 12724658 12725474 -139811785 + Lx7 LINE L1 6812 7681 -15 2 682 12569 102 3 7 chr5 12725498 12728056 -139809203 - L1_Mus1 LINE L1 -2 6565 4019 2 682 908 277 130 17 chr5 12728126 12728471 -139808788 + Lx8 LINE L1 7087 7470 -3 2 682 3697 137 10 3 chr5 12728531 12729133 -139808126 - Lx3_Mus LINE L1 -8 7001 6396 2 682 1509 86 63 0 chr5 12729135 12729356 -139807903 - L1_Mur1 LINE L1 -10 5876 5642 2 682 552 227 42 74 chr5 12729359 12729549 -139807710 - RLTR15 LTR ERVK 0 359 176 2 682 32 43 0 0 chr5 12729764 12729810 -139807449 + AT_rich Low_complexity Low_complexity 1 46 0 2 682 682 241 61 24 chr5 12732767 12733014 -139804245 + L1MA7 LINE L1 6004 6259 -32 2 682 270 115 0 0 chr5 12733713 12733765 -139803494 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 2 682 821 146 0 6 chr5 12734913 12735079 -139802180 + CT-rich Low_complexity Low_complexity 1 165 0 2 682 252 242 0 46 chr5 12735675 12735740 -139801519 + CT-rich Low_complexity Low_complexity 4 65 0 2 682 2717 218 119 77 chr5 12735875 12736741 -139800518 + RMER19B LTR ERVK 1 902 0 2 682 953 192 20 79 chr5 12737179 12737433 -139799826 - RMER1C Other Other -1 1341 1103 2 682 413 36 0 18 chr5 12737934 12737990 -139799269 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 682 13083 67 0 6 chr5 12738716 12741399 -139795860 + L1Md_F2 LINE L1 203 2966 -2920 3 682 13357 25 0 109 chr5 12741397 12742812 -139794447 + L1Md_F2 LINE L1 4175 5550 -336 3 682 8426 34 0 0 chr5 12742812 12743808 -139793451 + L1Md_T LINE L1 5587 6582 0 3 682 13357 29 1 58 chr5 12743808 12744756 -139792503 + L1Md_F2 LINE L1 5551 6330 -255 3 682 190 348 140 40 chr5 12744774 12745196 -139792063 - L2 LINE L2 -902 2517 2054 3 682 22 0 0 0 chr5 12745722 12745744 -139791515 + AT_rich Low_complexity Low_complexity 1 22 0 3 682 387 0 0 0 chr5 12746294 12746337 -139790922 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 682 468 0 0 0 chr5 12746337 12746388 -139790871 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 682 7998 83 25 4 chr5 12746633 12748012 -139789247 - L1_Mus3 LINE L1 0 6638 5205 3 682 228 291 52 52 chr5 12748909 12749025 -139788234 - MTEb LTR MaLR -3 376 261 3 682 312 205 362 7 chr5 12749549 12749682 -139787577 - Lx9 LINE L1 -35 7609 7436 3 682 468 48 0 0 chr5 12749682 12749745 -139787514 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 682 312 205 362 7 chr5 12749745 12749763 -139787496 - Lx9 LINE L1 -209 7435 7404 3 682 1724 241 19 46 chr5 12749756 12750217 -139787042 + Lx9 LINE L1 6923 7371 -273 3 682 224 79 53 0 chr5 12750464 12750502 -139786757 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 3 682 1025 81 35 6 chr5 12750503 12750676 -139786583 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3 682 492 188 140 35 chr5 12750688 12750831 -139786428 + Lx5 LINE L1 6892 7049 -1 3 682 379 321 77 63 chr5 12752837 12752980 -139784279 + RSINE1 SINE B4 8 152 -13 3 682 269 89 22 0 chr5 12752985 12753030 -139784229 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 682 21 57 0 0 chr5 12753372 12753407 -139783852 + AT_rich Low_complexity Low_complexity 1 35 0 3 682 34 0 0 0 chr5 12753718 12753752 -139783507 + AT_rich Low_complexity Low_complexity 1 34 0 3 682 1668 243 35 7 chr5 12754742 12755336 -139781923 - ORR1C2-int LTR MaLR -1076 433 1 3 682 1063 243 119 12 chr5 12755338 12755683 -139781576 - ORR1C2 LTR MaLR -2 382 1 3 682 1686 216 22 85 chr5 12756211 12756656 -139780603 + MTC LTR MaLR 5 421 0 3 682 297 0 0 0 chr5 12756808 12756841 -139780418 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 682 526 135 11 0 chr5 12757207 12757296 -139779963 + ORR1C1 LTR MaLR 1 90 -288 3 682 328 261 91 0 chr5 12757323 12757411 -139779848 - PB1D10 SINE Alu -4 113 18 3 682 582 15 0 0 chr5 12757516 12757583 -139779676 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 682 3678 84 6 0 chr5 12758422 12758912 -139778347 - L1_Mus1 LINE L1 -1 6566 6074 3 682 1072 70 0 14 chr5 12759055 12759200 -139778059 + B1_Mus2 SINE Alu 5 147 0 3 682 189 0 0 0 chr5 12759202 12759223 -139778036 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 682 27 100 0 0 chr5 12759388 12759478 -139777781 + AT_rich Low_complexity Low_complexity 1 90 0 3 682 3534 84 27 23 chr5 12760166 12760723 -139776536 + L1Md_F2 LINE L1 6067 6582 0 3 682 6054 170 9 15 chr5 12760723 12760852 -139776407 + Lx2 LINE L1 4776 4899 -978 3 682 1010 40 13 50 chr5 12760852 12761011 -139776248 - L1Md_F3 LINE L1 0 6584 6432 3 682 6651 145 27 10 chr5 12761011 12762739 -139774520 + Lx2 LINE L1 4900 6664 -333 3 682 4817 98 6 10 chr5 12762739 12763439 -139773820 + L1_Mus3 LINE L1 5940 6636 -2 3 682 286 74 0 32 chr5 12764006 12764072 -139773187 + L1_Mus4 LINE L1 6526 6632 -4 3 682 931 184 14 2 chr5 12764081 12764267 -139772992 + B2_Mm2 SINE B2 1 201 -15 3 682 213 250 0 18 chr5 12764643 12764700 -139772559 - L2b LINE L2 0 3375 3320 3 682 562 275 52 19 chr5 12765701 12765912 -139771347 + RLTR45 LTR ERVK 265 482 0 3 682 258 105 0 0 chr5 12766174 12766212 -139771047 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 682 355 259 9 35 chr5 12766250 12766366 -139770893 + Lx7 LINE L1 7561 7673 -23 3 682 206 183 48 12 chr5 12767104 12767187 -139770072 + (TA)n Simple_repeat Simple_repeat 1 86 0 3 682 994 111 35 6 chr5 12768346 12768518 -139768741 - L1_Mus4 LINE L1 -1 6635 6459 3 682 1370 86 5 0 chr5 12768522 12768708 -139768551 + L1_Mus3 LINE L1 5947 6133 -503 3 682 1472 95 22 9 chr5 12768708 12768931 -139768328 + L1_Mus3 LINE L1 6406 6631 -7 3 682 1866 169 16 72 chr5 12770033 12770408 -139766851 - ORR1B1 LTR MaLR 0 394 41 3 682 273 357 89 32 chr5 12770709 12771123 -139766136 + MLT1C LTR MaLR 34 464 -3 3 682 293 312 39 0 chr5 12771153 12771230 -139766029 + MLT1A0 LTR MaLR 22 101 -264 3 682 402 261 134 0 chr5 12771316 12771435 -139765824 + MLT1A0 LTR MaLR 223 357 -8 3 682 414 0 0 0 chr5 12771902 12771948 -139765311 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 682 31867 68 13 16 chr5 12771954 12776509 -139760750 + L1Md_Gf LINE L1 238 4916 -970 3 682 231 183 46 77 chr5 12776509 12776574 -139760685 - RMER20A LTR ERVK -268 248 186 3 682 31867 68 13 16 chr5 12776574 12777227 -139760032 + L1Md_Gf LINE L1 4917 5588 -298 3 682 8274 43 0 0 chr5 12777228 12778224 -139759035 + L1Md_T LINE L1 5587 6582 0 3 682 6393 58 1 1 chr5 12778224 12779072 -139758187 + L1Md_F2 LINE L1 4737 5584 -299 3 682 8102 48 1 2 chr5 12779075 12780071 -139757188 + L1Md_F2 LINE L1 5588 6582 0 3 682 383 329 7 20 chr5 12780148 12780294 -139756965 + MER34A1 LTR ERV1 284 427 -160 3 682 575 284 49 0 chr5 12780694 12780958 -139756301 + L1MD LINE L1 2269 2545 -3601 3 682 263 239 30 0 chr5 12781371 12781438 -139755821 + (TATG)n Simple_repeat Simple_repeat 4 72 0 3 682 4283 65 28 0 chr5 12781523 12781603 -139755656 + LTRIS_Mus LTR ERV1 1 80 -507 3 682 4077 53 10 4 chr5 12781603 12782113 -139755146 + L1Md_F2 LINE L1 6070 6582 0 3 682 4283 65 28 0 chr5 12782113 12782603 -139754656 + LTRIS_Mus LTR ERV1 81 585 -2 3 682 2078 139 70 36 chr5 12782674 12783061 -139754198 + RLTR9D LTR ERVK 1 400 -3 3 682 339 212 23 34 chr5 12783074 12783162 -139754097 + L1MD LINE L1 3099 3185 -2961 3 682 818 167 0 18 chr5 12783187 12783358 -139753901 + CT-rich Low_complexity Low_complexity 2 169 0 3 682 704 177 11 11 chr5 12783494 12783671 -139753588 + CT-rich Low_complexity Low_complexity 2 178 0 3 682 462 314 112 6 chr5 12783699 12783859 -139753400 - B4 SINE B4 -112 180 4 3 682 6734 205 57 82 chr5 12784134 12786497 -139750762 + RMER3D-int LTR ERVK 4 2651 -191 3 682 2160 91 42 10 chr5 12786497 12786808 -139750451 + L1_Mus2 LINE L1 6246 6566 0 3 682 194 0 39 0 chr5 12786811 12786837 -139750422 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 682 6734 200 55 87 chr5 12786837 12787022 -139750237 + RMER3D-int LTR ERVK 2652 2821 -21 3 682 2117 180 119 25 chr5 12787057 12787570 -139749689 + RLTR31_Mm LTR ERVK 1 561 0 3 682 403 276 34 28 chr5 12787570 12787741 -139749518 + L1MD LINE L1 3395 3567 -2579 3 682 789 96 0 0 chr5 12787827 12787952 -139749307 + (TC)n Simple_repeat Simple_repeat 2 126 0 3 682 469 315 53 104 chr5 12788090 12788427 -139748832 - MLT1A0 LTR MaLR -45 320 1 3 682 5738 176 35 27 chr5 12788897 12790082 -139747177 - Lx2B LINE L1 -6 6994 5800 3 682 37545 34 2 6 chr5 12790084 12796322 -139740937 - L1Md_A LINE L1 0 6582 379 3 682 27692 106 9 36 chr5 12796343 12800521 -139736738 - L1_Mus1 LINE L1 -1 6566 2347 3 682 3291 36 10 0 chr5 12800521 12800913 -139736346 + MTA_Mm LTR MaLR 1 396 0 3 682 9318 28 3 0 chr5 12800913 12802008 -139735251 + MTA_Mm-int LTR MaLR 1 1098 0 3 682 3272 25 5 53 chr5 12802008 12802424 -139734835 + MTA_Mm LTR MaLR 1 396 0 3 682 27692 112 8 47 chr5 12802424 12803074 -139734185 - L1_Mus1 LINE L1 -3537 2346 1828 3 682 2916 48 11 0 chr5 12803074 12803430 -139733829 - L1Md_F3 LINE L1 -15 6569 6210 3 682 27692 83 5 21 chr5 12803430 12804970 -139732289 - L1_Mus1 LINE L1 -4056 1827 371 3 682 1539 182 30 6 chr5 12804969 12805306 -139731953 - L1Md_F LINE L1 -5659 860 516 3 682 243 152 0 21 chr5 12805314 12805361 -139731898 - Lx2 LINE L1 -1184 5813 5768 3 682 28 0 0 0 chr5 12805443 12805471 -139731788 + AT_rich Low_complexity Low_complexity 1 28 0 3 682 236 211 19 0 chr5 12805486 12805538 -139731721 + CT-rich Low_complexity Low_complexity 2 54 0 3 682 7062 70 16 0 chr5 12805544 12806768 -139730491 - L1Md_F2 LINE L1 -12 6570 5323 3 682 217 97 0 0 chr5 12806769 12806800 -139730459 + B3 SINE B2 2 32 -184 3 682 272 276 19 93 chr5 12807423 12807531 -139729728 + MER5B DNA MER1_type 1 100 -78 3 682 357 293 0 0 chr5 12807880 12807962 -139729297 - B3A SINE B2 -115 83 2 3 682 2229 101 80 3 chr5 12808147 12808523 -139728736 + Lx3_Mus LINE L1 6561 6965 -44 3 682 672 102 0 0 chr5 12808553 12808651 -139728608 + (GAGAA)n Simple_repeat Simple_repeat 2 99 0 3 682 383 355 91 27 chr5 12811013 12811343 -139725916 + Lx8 LINE L1 6905 7255 -218 3 682 3628 70 19 2 chr5 12811315 12811833 -139725426 - L1_Mus1 LINE L1 -483 6514 5640 3 682 2996 83 34 2 chr5 12811834 12812244 -139725015 + L1_Mus1 LINE L1 6145 6567 0 3 682 208 0 62 0 chr5 12812351 12812383 -139724876 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 3 682 987 123 0 0 chr5 12812975 12813113 -139724146 + B1_Mus1 SINE Alu 1 138 -10 3 682 558 0 0 0 chr5 12813113 12813175 -139724084 + (CAAAA)n Simple_repeat Simple_repeat 2 63 0 3 682 1221 106 0 0 chr5 12813237 12813417 -139723842 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 682 256 333 33 11 chr5 12813472 12813563 -139723696 - MER5B DNA MER1_type -55 123 31 3 682 518 317 44 0 chr5 12813691 12813871 -139723388 + MER5A DNA MER1_type 2 189 0 3 682 9194 13 0 1 chr5 12814079 12815885 -139721374 - L1Md_T LINE L1 0 6582 4778 3 682 13174 21 0 0 chr5 12815885 12817506 -139719753 + L1Md_T LINE L1 3137 4757 -1126 3 682 316 351 6 6 chr5 12817751 12817923 -139719336 + (TG)n Simple_repeat Simple_repeat 2 173 0 3 682 225 108 0 0 chr5 12817948 12817985 -139719274 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 682 378 85 0 0 chr5 12818035 12818094 -139719165 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 682 30 45 0 0 chr5 12819054 12819098 -139718161 + AT_rich Low_complexity Low_complexity 1 44 0 3 682 26 50 0 0 chr5 12819181 12819221 -139718038 + AT_rich Low_complexity Low_complexity 1 40 0 3 682 292 330 73 31 chr5 12819809 12820000 -139717259 + LTR79 LTR ERVL 1 199 -328 3 682 292 242 60 147 chr5 12820910 12821026 -139716233 - B1F2 SINE Alu 0 120 15 3 682 247 302 0 16 chr5 12821099 12821163 -139716096 + ID_B1 SINE B4 90 152 -72 3 682 240 387 16 8 chr5 12821163 12821224 -139716035 + B1_Mus2 SINE Alu 9 134 -13 3 682 28 61 0 0 chr5 12822775 12822824 -139714435 + AT_rich Low_complexity Low_complexity 1 49 0 3 682 203 0 37 0 chr5 12822955 12822982 -139714277 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 682 303 340 0 0 chr5 12823019 12823116 -139714143 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 682 644 320 115 0 chr5 12823361 12823605 -139713654 - B4A SINE B4 -18 274 3 3 682 24 0 0 0 chr5 12823743 12823767 -139713492 + AT_rich Low_complexity Low_complexity 1 24 0 3 682 336 153 0 0 chr5 12824202 12824287 -139712972 + T-rich Low_complexity Low_complexity 1 85 0 4 682 883 92 0 8 chr5 12824288 12824409 -139712850 - B1_Mus1 SINE Alu -1 147 28 4 682 491 348 19 6 chr5 12824451 12824610 -139712649 + RSINE1 SINE B4 5 165 0 4 682 246 62 0 0 chr5 12824729 12824761 -139712498 + (A)n Simple_repeat Simple_repeat 1 32 0 4 682 396 143 0 0 chr5 12825167 12825237 -139712022 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 682 207 0 0 0 chr5 12825687 12825710 -139711549 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 682 198 0 0 0 chr5 12825735 12825757 -139711502 + (T)n Simple_repeat Simple_repeat 1 22 0 4 682 379 165 198 0 chr5 12825786 12825877 -139711382 - MT2B LTR ERVL 0 601 493 4 682 34 79 0 0 chr5 12825921 12825997 -139711262 + AT_rich Low_complexity Low_complexity 1 76 0 4 682 340 257 9 9 chr5 12826149 12826259 -139711000 + L1VL1 LINE L1 283 392 -6030 4 682 412 240 24 16 chr5 12826393 12826520 -139710739 + L1_Mus3 LINE L1 675 802 -5814 4 682 2388 179 6 76 chr5 12826529 12826661 -139710598 + L1_Mus3 LINE L1 725 859 -5757 4 682 1100 116 0 16 chr5 12826661 12826845 -139710414 + L1Md_F2 LINE L1 6402 6582 0 4 682 28466 126 20 10 chr5 12826845 12832535 -139704724 + L1_Mus3 LINE L1 854 6633 -5 4 682 351 0 0 0 chr5 12832547 12832586 -139704673 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 682 184 394 50 28 chr5 12832806 12832986 -139704273 - L4 LINE RTE -436 1593 1410 4 682 25 31 0 0 chr5 12834030 12834062 -139703197 + AT_rich Low_complexity Low_complexity 1 32 0 4 682 265 162 162 0 chr5 12834062 12834136 -139703123 - Lx4A LINE L1 -2 7056 6971 4 682 790 250 29 9 chr5 12834170 12834380 -139702879 - B3 SINE B2 0 216 3 4 682 180 77 0 0 chr5 12834576 12834602 -139702657 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 682 250 337 86 51 chr5 12835440 12835753 -139701506 + L1MCb LINE L1 481 804 -5241 4 682 319 327 28 30 chr5 12835812 12836088 -139701171 + L1MCb LINE L1 953 1307 -5444 4 682 318 50 0 0 chr5 12836141 12836181 -139701078 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 682 1234 282 82 36 chr5 12836963 12837353 -139699906 + MTD LTR MaLR 6 413 -6 4 682 22 0 0 0 chr5 12837521 12837543 -139699716 + AT_rich Low_complexity Low_complexity 1 22 0 4 682 438 36 0 0 chr5 12837968 12838024 -139699235 + (CTATA)n Simple_repeat Simple_repeat 2 57 0 4 682 345 285 126 31 chr5 12838738 12838865 -139698394 - MLT1C LTR MaLR -51 416 278 4 682 7607 70 4 0 chr5 12839133 12840327 -139696932 + L1_Mus2 LINE L1 5358 6555 -11 4 682 360 0 0 0 chr5 12840327 12840367 -139696892 + (TAA)n Simple_repeat Simple_repeat 3 42 0 4 682 220 261 0 0 chr5 12840487 12840533 -139696726 + GA-rich Low_complexity Low_complexity 3 48 0 4 682 38 22 0 0 chr5 12840556 12840601 -139696658 + AT_rich Low_complexity Low_complexity 1 45 0 4 682 5464 117 34 4 chr5 12840696 12841539 -139695720 + L1_Mus4 LINE L1 5768 6636 0 4 682 881 228 25 75 chr5 12841779 12842140 -139695119 - Lx9 LINE L1 0 7644 7302 4 682 757 268 55 47 chr5 12842198 12842472 -139694787 + Lx9 LINE L1 6927 7202 -442 4 682 261 244 83 45 chr5 12842477 12842610 -139694649 - MER58B DNA MER1_type -154 187 50 4 682 258 207 0 0 chr5 12842611 12842669 -139694590 + A-rich Low_complexity Low_complexity 1 58 0 4 682 24 0 0 0 chr5 12843049 12843073 -139694186 + AT_rich Low_complexity Low_complexity 1 24 0 4 682 247 217 0 0 chr5 12843244 12843304 -139693955 + Lx9 LINE L1 7421 7480 -164 4 682 351 0 0 0 chr5 12843306 12843345 -139693914 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 682 594 248 3 35 chr5 12843689 12843838 -139693421 + B1_Mur4 SINE Alu 2 147 -2 4 682 496 247 60 20 chr5 12844432 12844581 -139692678 - MER121 Unknown Unknown -203 209 55 4 683 1090 179 111 16 chr5 12845126 12845370 -139691889 - Lx2 LINE L1 -1 6996 6730 4 683 605 292 44 127 chr5 12845653 12845704 -139691555 - MLT1B LTR MaLR -132 258 218 4 683 1576 42 5 0 chr5 12845704 12845896 -139691363 - B2_Mm1a SINE B2 0 193 1 4 683 605 292 44 127 chr5 12845896 12846119 -139691140 - MLT1B LTR MaLR -173 217 7 4 683 258 54 0 26 chr5 12846851 12846889 -139690370 - RLTR9E LTR ERVK -372 37 1 4 683 539 79 13 0 chr5 12846889 12846965 -139690294 - ETnERV2-int LTR ERVK 0 7406 7330 4 683 2921 134 9 23 chr5 12847142 12847814 -139689445 - ETnERV2-int LTR ERVK -1179 6227 5835 4 683 2487 124 0 0 chr5 12847808 12848146 -139689113 - ETnERV2-int LTR ERVK -2507 4899 4562 4 683 1388 310 51 28 chr5 12848291 12848972 -139688287 - SRV_MM-int LTR ERVK -3767 2400 1704 4 683 3278 116 8 6 chr5 12849029 12849523 -139687736 - RLTR1C LTR ERV1 -8 495 1 4 683 8083 213 24 16 chr5 12849552 12851292 -139685967 - ETnERV-int LTR ERVK -3858 3386 2 4 683 2777 87 17 38 chr5 12851293 12851711 -139685548 - RLTR9E LTR ERVK 0 409 1 4 683 2470 203 126 16 chr5 12851786 12852397 -139684862 - Lx2 LINE L1 0 6997 6320 4 683 2784 251 106 5 chr5 12852419 12853203 -139684056 + Lx6 LINE L1 6286 7148 -312 4 683 289 234 102 0 chr5 12853226 12853354 -139683905 - L1M3 LINE L1 -2772 3368 3228 4 683 209 128 51 0 chr5 12853374 12853413 -139683846 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 683 252 32 0 0 chr5 12854806 12854837 -139682422 - MuRRS4-int LTR ERV1 -1393 3670 3640 4 683 357 62 0 0 chr5 12855789 12855837 -139681422 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 683 21 57 0 0 chr5 12856011 12856046 -139681213 + AT_rich Low_complexity Low_complexity 1 35 0 4 683 202 289 0 0 chr5 12856509 12856561 -139680698 + L3 LINE CR1 3984 4035 -454 4 683 369 62 0 0 chr5 12856615 12856663 -139680596 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 683 23 33 0 0 chr5 12857461 12857491 -139679768 + AT_rich Low_complexity Low_complexity 1 30 0 4 683 3486 214 18 12 chr5 12857777 12858573 -139678686 + Lx7 LINE L1 4903 5709 -1987 4 683 246 246 17 17 chr5 12858569 12858627 -139678632 + Lx7 LINE L1 6667 6724 -972 4 683 1332 243 194 19 chr5 12858690 12859113 -139678146 + Lx6 LINE L1 6742 7238 -222 4 683 552 189 18 119 chr5 12859119 12859173 -139678086 - L1_Mur2 LINE L1 -1120 4760 4715 4 683 1567 16 26 11 chr5 12859173 12859362 -139677897 - B2_Mm1a SINE B2 0 193 2 4 683 552 189 18 119 chr5 12859362 12859475 -139677784 - L1_Mur2 LINE L1 -1166 4714 4610 4 683 3335 162 131 91 chr5 12859482 12860306 -139676953 + RLTR13D2 LTR ERVK 1 787 -236 4 683 326 202 60 17 chr5 12860306 12860422 -139676837 - L1_Mur2 LINE L1 -1932 3948 3828 4 683 4565 213 21 9 chr5 12860399 12861485 -139675774 - L1_Mur2 LINE L1 -2656 3221 2123 4 683 811 54 54 0 chr5 12861485 12861592 -139675667 + B1_Mm SINE Alu 27 139 -8 4 683 228 35 0 0 chr5 12861592 12861621 -139675638 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 683 479 222 126 23 chr5 12861636 12861811 -139675448 - L1_Mur2 LINE L1 -3758 2122 1930 4 683 1451 238 70 43 chr5 12861811 12862367 -139674892 - RLTR20A LTR ERVK 0 541 6 4 683 350 167 136 10 chr5 12862373 12862476 -139674783 - MYSERV16_I-int LTR ERVK 0 2326 2211 4 683 5539 161 56 24 chr5 12862473 12863678 -139673581 - MYSERV16_I-int LTR ERVK -17 2309 1067 4 683 3757 202 72 42 chr5 12863683 12864734 -139672525 - MYSERV16_I-int LTR ERVK -1484 1358 1 4 683 1078 259 48 37 chr5 12865458 12865919 -139671340 + RLTR20A2 LTR ERVK 2 566 -12 4 683 4894 170 61 50 chr5 12865947 12867158 -139670101 - MYSERV16_I-int LTR ERVK -2 2324 1101 4 683 1193 217 12 66 chr5 12867168 12867488 -139669771 - MYSERV16_I-int LTR ERVK -1391 935 633 4 683 1132 185 49 17 chr5 12867487 12867774 -139669485 - MYSERV16_I-int LTR ERVK -1782 544 277 4 683 1023 218 0 52 chr5 12867774 12868064 -139669195 - RMER3D-int LTR ERVK -1456 1386 1112 4 683 398 225 22 22 chr5 12868237 12868328 -139668931 - RMER3D-int LTR ERVK -1731 1111 1021 4 683 615 267 33 87 chr5 12868539 12868814 -139668445 - RMER3D-int LTR ERVK -2483 359 100 4 683 398 175 37 37 chr5 12868934 12869041 -139668218 - RLTR16 LTR ERVK 0 505 399 4 683 1579 212 133 49 chr5 12869100 12869270 -139667989 + RLTR16 LTR ERVK 1 218 -287 4 683 716 76 227 0 chr5 12869270 12869389 -139667870 - B1_Mus1 SINE Alu 0 148 3 4 683 1579 212 133 49 chr5 12869389 12869684 -139667575 + RLTR16 LTR ERVK 219 505 0 4 683 2299 210 46 10 chr5 12869922 12870418 -139666841 + RLTR11A LTR ERVK 10 523 -5 4 683 354 55 87 11 chr5 12870698 12870790 -139666469 + (TA)n Simple_repeat Simple_repeat 1 99 0 4 683 37 39 0 0 chr5 12870801 12870852 -139666407 + AT_rich Low_complexity Low_complexity 1 51 0 4 683 242 138 0 17 chr5 12871876 12871935 -139665324 + T-rich Low_complexity Low_complexity 2 59 0 4 683 295 252 24 130 chr5 12871938 12872061 -139665198 - PB1D10 SINE Alu -1 116 7 4 683 305 306 100 50 chr5 12872064 12872305 -139664954 + L1MC3 LINE L1 6715 6967 -818 4 683 414 144 41 10 chr5 12872305 12872403 -139664856 - L1_Mus3 LINE L1 -41 6597 6497 4 683 6052 152 22 25 chr5 12872472 12872713 -139664546 - Lx LINE L1 -6 6648 6416 4 683 2156 147 52 30 chr5 12872713 12873113 -139664146 - RLTR9E LTR ERVK 0 409 1 4 683 18748 169 25 16 chr5 12873113 12876184 -139661075 - Lx LINE L1 -239 6415 3310 4 683 1567 22 22 0 chr5 12876184 12876366 -139660893 - B2_Mm1a SINE B2 -6 187 2 4 683 18748 175 26 12 chr5 12876366 12876523 -139660736 - Lx LINE L1 -2574 3309 3158 4 683 479 17 17 0 chr5 12876523 12876583 -139660676 + (TTA)n Simple_repeat Simple_repeat 3 63 0 4 683 18748 175 26 12 chr5 12876583 12877563 -139659696 - Lx LINE L1 -2726 3157 2159 4 683 2771 92 41 32 chr5 12877563 12878024 -139659235 - RLTR45 LTR ERVK 0 482 18 4 683 22 35 0 0 chr5 12879887 12879916 -139657343 + AT_rich Low_complexity Low_complexity 1 29 0 4 683 24 32 0 0 chr5 12880237 12880268 -139656991 + AT_rich Low_complexity Low_complexity 1 31 0 4 683 321 68 0 0 chr5 12880302 12880346 -139656913 + (GTTTG)n Simple_repeat Simple_repeat 1 44 0 4 683 182 339 78 16 chr5 12880434 12880563 -139656696 + MIRc SINE MIR 128 264 -4 4 683 22 56 0 0 chr5 12880772 12880808 -139656451 + AT_rich Low_complexity Low_complexity 1 36 0 4 683 1968 223 98 54 chr5 12881079 12881447 -139655812 + RMER17B LTR ERVK 1 406 -552 4 683 452 18 0 17 chr5 12881447 12881505 -139655754 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 683 1968 223 98 54 chr5 12881505 12881799 -139655460 + RMER17B LTR ERVK 407 692 -266 4 683 6896 121 11 5 chr5 12881799 12882985 -139654274 + L1_Mus4 LINE L1 5423 6615 -21 4 683 410 36 18 0 chr5 12883163 12883219 -139654040 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 4 683 354 146 0 0 chr5 12884451 12884533 -139652726 + (TG)n Simple_repeat Simple_repeat 2 83 0 4 683 208 70 0 44 chr5 12886696 12886741 -139650518 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 683 898 333 66 13 chr5 12886803 12887107 -139650152 - ORR1D2 LTR MaLR -48 322 3 4 683 1966 273 67 45 chr5 12887109 12887688 -139649571 - ORR1D2-int LTR MaLR 0 1370 779 4 683 1068 273 79 36 chr5 12887707 12888125 -139649134 - ORR1D2-int LTR MaLR -681 689 254 4 683 574 265 70 27 chr5 12888125 12888311 -139648948 + MTEa LTR MaLR 141 334 -45 4 683 15767 162 42 16 chr5 12888474 12891512 -139645747 + L1VL4 LINE L1 545 3570 -2313 4 683 423 0 0 0 chr5 12891512 12891559 -139645700 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 683 15767 155 50 16 chr5 12891559 12892261 -139644998 + L1VL4 LINE L1 3571 4388 -1495 4 683 2003 141 114 0 chr5 12892262 12892603 -139644656 - RLTR25A LTR ERVK -718 385 6 4 683 577 251 39 68 chr5 12892688 12892992 -139644267 + RMER17C LTR ERVK 1 482 -327 4 683 321 54 54 0 chr5 12892992 12893048 -139644211 + (TCTCCC)n Simple_repeat Simple_repeat 3 61 0 4 683 808 209 62 28 chr5 12893049 12893369 -139643890 + RMER17C LTR ERVK 80 410 0 4 683 961 178 80 107 chr5 12893634 12893923 -139643336 + RMER17C-int LTR ERVK 2 282 -2956 4 683 400 170 52 7 chr5 12893927 12894063 -139643196 + CT-rich Low_complexity Low_complexity 5 146 0 5 683 1314 251 21 68 chr5 12894206 12894677 -139642582 + RMER17C-int LTR ERVK 343 791 -2447 4 683 250 143 0 0 chr5 12895299 12895334 -139641925 + RMER17C-int LTR ERVK 1118 1152 -2086 4 683 5875 166 77 16 chr5 12895349 12895992 -139641267 + RMER17C-int LTR ERVK 1134 1814 -1424 4 683 423 0 0 0 chr5 12895992 12896039 -139641220 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 683 5875 148 74 30 chr5 12896039 12896971 -139640288 + RMER17C-int LTR ERVK 1815 2874 -364 4 683 351 0 0 0 chr5 12896971 12897010 -139640249 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 683 4267 131 70 44 chr5 12897010 12897333 -139639926 + RMER17C-int LTR ERVK 2875 3216 -22 4 683 1470 199 36 31 chr5 12897336 12897572 -139639687 + RMER17C LTR ERVK 1 236 -722 4 683 768 90 39 0 chr5 12897572 12897727 -139639532 + (TCTG)n Simple_repeat Simple_repeat 2 162 0 5 683 1470 197 33 33 chr5 12897727 12897901 -139639358 + RMER17C LTR ERVK 215 389 -21 4 683 531 170 0 0 chr5 12897901 12898001 -139639258 + CT-rich Low_complexity Low_complexity 3 102 0 5 683 418 331 39 0 chr5 12898039 12898166 -139639093 + B1F SINE Alu 10 141 -8 5 683 207 0 0 0 chr5 12898186 12898209 -139639050 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 5 683 748 300 56 26 chr5 12898721 12898865 -139638394 + RLTR16 LTR ERVK 1 154 -351 5 683 870 62 0 0 chr5 12898865 12898978 -139638281 + (CTATT)n Simple_repeat Simple_repeat 3 115 0 5 683 748 300 56 26 chr5 12898978 12899103 -139638156 + RLTR16 LTR ERVK 155 278 -227 5 683 185 275 11 81 chr5 12899135 12899222 -139638037 - L2 LINE L2 -771 2648 2568 5 683 23 0 0 0 chr5 12899614 12899637 -139637622 + AT_rich Low_complexity Low_complexity 1 23 0 5 683 239 344 55 25 chr5 12901157 12901357 -139635902 + LTR41 LTR ERVL 551 756 -12 5 683 528 314 79 24 chr5 12901673 12901927 -139635332 + MLT1C LTR MaLR 200 467 0 5 683 23 33 0 0 chr5 12902041 12902071 -139635188 + AT_rich Low_complexity Low_complexity 1 30 0 5 683 237 309 82 10 chr5 12902151 12902249 -139635010 - RMER15 LTR ERVL 0 575 471 5 683 790 330 88 44 chr5 12902276 12902935 -139634324 - RMER15-int LTR ERVL -129 4870 4183 5 683 1070 110 0 0 chr5 12903059 12903204 -139634055 + B1_Mus1 SINE Alu 2 146 -2 5 683 397 305 40 6 chr5 12903556 12903731 -139633528 + RMER15-int LTR ERVL 1466 1646 -3353 5 683 286 323 51 19 chr5 12904029 12904187 -139633072 - RMER15-int LTR ERVL -3973 1026 864 5 683 180 0 0 0 chr5 12904399 12904419 -139632840 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 683 180 0 0 0 chr5 12904450 12904470 -139632789 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 5 683 310 344 15 0 chr5 12904481 12904612 -139632647 - RMER15-int LTR ERVL -4404 595 463 5 683 313 179 12 12 chr5 12904840 12904859 -139632400 + polypyrimidine Low_complexity Low_complexity 67 86 0 5 683 1158 122 0 0 chr5 12904859 12905039 -139632220 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 5 683 313 179 12 12 chr5 12905039 12905104 -139632155 + CT-rich Low_complexity Low_complexity 2 66 0 5 683 5099 210 63 26 chr5 12905104 12906866 -139630393 - Lx4B LINE L1 -15 6985 5141 5 683 2656 171 64 15 chr5 12906894 12907619 -139629640 + Lx5 LINE L1 5357 6112 -938 5 683 2852 228 85 60 chr5 12907637 12908452 -139628807 + Lx5 LINE L1 6209 7043 -7 5 683 375 60 0 0 chr5 12908525 12908575 -139628684 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 683 5406 65 7 0 chr5 12908638 12909331 -139627928 - L1_Mus1 LINE L1 0 6567 5870 5 683 400 300 0 18 chr5 12909348 12909460 -139627799 - B3 SINE B2 -106 110 1 5 683 28 61 0 0 chr5 12909699 12909748 -139627511 + AT_rich Low_complexity Low_complexity 1 49 0 5 683 30 0 0 0 chr5 12909849 12909879 -139627380 + AT_rich Low_complexity Low_complexity 1 30 0 5 683 1614 167 289 46 chr5 12910733 12911057 -139626202 + RMER6C LTR ERVK 3 364 -326 5 683 494 31 0 15 chr5 12911057 12911122 -139626137 + (CAGTT)n Simple_repeat Simple_repeat 2 65 0 5 683 1614 167 289 46 chr5 12911122 12911143 -139626116 + RMER6C LTR ERVK 365 410 -280 5 683 3352 46 0 0 chr5 12911143 12911538 -139625721 + MTA_Mm LTR MaLR 1 395 -1 5 683 1614 205 182 92 chr5 12911538 12911932 -139625327 + RMER6C LTR ERVK 359 720 0 5 683 434 323 43 29 chr5 12912338 12912545 -139624714 - B3 SINE B2 -6 210 1 5 683 228 310 48 72 chr5 12916558 12916683 -139620576 + Charlie4z DNA MER1_type 13 134 -33 5 683 268 120 53 0 chr5 12917255 12917330 -139619929 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 5 683 1510 151 104 20 chr5 12917568 12917580 -139619679 - ORR1A3 LTR MaLR -4 322 316 5 683 3474 23 2 0 chr5 12917580 12917975 -139619284 + MTA_Mm LTR MaLR 1 396 0 5 683 1510 151 104 20 chr5 12917975 12918259 -139619000 - ORR1A3 LTR MaLR -11 315 1 5 683 8680 168 107 23 chr5 12918259 12920071 -139617188 - ORR1A3-int LTR MaLR 0 1963 1 5 683 1864 146 32 0 chr5 12920071 12920387 -139616872 - ORR1A3 LTR MaLR 0 326 1 5 683 213 256 0 49 chr5 12921390 12921472 -139615787 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 5 683 259 311 84 58 chr5 12921859 12921938 -139615321 - L1M2 LINE L1 -1769 4374 4308 5 683 2555 175 191 3 chr5 12921938 12922518 -139614741 + RMER6C LTR ERVK 2 690 0 5 683 259 311 84 58 chr5 12922518 12922663 -139614596 - L1M2 LINE L1 -1836 4307 4144 5 683 227 79 0 26 chr5 12922828 12922867 -139614392 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 5 683 409 222 9 0 chr5 12923332 12923440 -139613819 + Lx9 LINE L1 7535 7643 -1 5 683 367 231 9 88 chr5 12923566 12923579 -139613680 + MT2B LTR ERVL 153 156 -445 5 683 796 125 81 0 chr5 12923579 12923715 -139613544 + B1_Mus1 SINE Alu 2 148 0 5 683 255 130 0 0 chr5 12923715 12923769 -139613490 + (A)n Simple_repeat Simple_repeat 1 54 0 5 683 189 0 0 0 chr5 12923771 12923792 -139613467 + (CCA)n Simple_repeat Simple_repeat 1 21 0 5 683 1025 239 21 30 chr5 12923814 12924047 -139613212 + RMER20B LTR ERVK 372 602 -25 5 683 1790 290 113 33 chr5 12924049 12925236 -139612023 - L1M2 LINE L1 -1337 4806 3518 5 683 1267 24 157 0 chr5 12925236 12925384 -139611875 + B2_Mm1a SINE B2 1 160 -33 5 683 351 0 0 0 chr5 12925384 12925423 -139611836 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 5 683 1267 24 157 0 chr5 12925423 12925440 -139611819 + B2_Mm1a SINE B2 161 190 -3 5 683 1790 290 113 33 chr5 12925440 12925688 -139611571 - L1M2 LINE L1 -2626 3517 3258 5 683 447 19 0 0 chr5 12925688 12925740 -139611519 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 683 1790 290 113 33 chr5 12925740 12926013 -139611246 - L1M2 LINE L1 -2886 3257 2960 5 683 275 300 66 16 chr5 12926314 12926436 -139610823 + ID_B1 SINE B4 90 217 -7 5 683 244 353 58 0 chr5 12926444 12926591 -139610668 + B4A SINE B4 5 165 -127 5 683 420 20 0 0 chr5 12926706 12926755 -139610504 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 683 180 0 0 0 chr5 12926759 12926779 -139610480 + (GA)n Simple_repeat Simple_repeat 2 21 0 5 683 1698 194 162 40 chr5 12927346 12927851 -139609408 - RMER2 LTR ERV1 0 567 1 5 683 373 162 0 75 chr5 12928688 12928765 -139608494 + RLTR20B3 LTR ERVK 1 71 -506 5 683 2562 181 74 55 chr5 12928765 12928860 -139608399 - RLTR20A2 LTR ERVK 0 578 495 5 683 489 34 0 0 chr5 12928860 12928919 -139608340 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 683 2562 181 74 55 chr5 12928919 12929389 -139607870 - RLTR20A2 LTR ERVK -84 494 2 5 683 1421 241 78 37 chr5 12929389 12929815 -139607444 + RLTR20B3 LTR ERVK 74 517 -60 5 683 486 96 0 0 chr5 12930161 12930234 -139607025 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 683 332 320 22 66 chr5 12930244 12930381 -139606878 - B3 SINE B2 -84 132 2 5 683 423 128 0 0 chr5 12931042 12931128 -139606131 + (TATG)n Simple_repeat Simple_repeat 3 88 0 5 683 24 67 0 0 chr5 12932163 12932208 -139605051 + AT_rich Low_complexity Low_complexity 1 45 0 5 683 871 237 43 0 chr5 12932860 12933067 -139604192 + B3 SINE B2 1 216 0 5 683 3255 156 48 15 chr5 12933069 12933655 -139603604 - Lx2B LINE L1 -3 6997 6393 5 683 612 133 0 22 chr5 12933655 12933747 -139603512 + B2_Mm2 SINE B2 14 103 -92 5 683 566 155 81 9 chr5 12933767 12933878 -139603381 + B2_Mm2 SINE B2 74 192 -3 5 683 24 32 0 0 chr5 12933894 12933925 -139603334 + AT_rich Low_complexity Low_complexity 1 31 0 5 683 405 0 0 0 chr5 12934166 12934211 -139603048 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 683 507 328 26 52 chr5 12934230 12934612 -139602647 - L1MA7 LINE L1 -461 5830 5400 5 683 309 328 17 29 chr5 12934651 12934890 -139602369 + L1M2 LINE L1 5160 5395 -748 5 683 414 0 0 0 chr5 12935046 12935092 -139602167 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 683 1010 286 116 3 chr5 12935394 12935738 -139601521 + MTD LTR MaLR 33 415 -4 5 683 463 288 56 6 chr5 12937156 12937317 -139599942 - AmnSINE1 SINE SINE -402 173 5 5 683 22 35 0 0 chr5 12937887 12937916 -139599343 + AT_rich Low_complexity Low_complexity 1 29 0 5 683 741 185 82 6 chr5 12938134 12938292 -139598967 - MLT2D LTR ERVL -244 170 1 5 683 917 327 60 54 chr5 12938292 12938770 -139598489 - MER90 LTR ERV1 -93 482 2 5 683 552 297 40 20 chr5 12940527 12940678 -139596581 - ETnERV2-int LTR ERVK -183 7223 7070 5 683 471 174 53 12 chr5 12941535 12941704 -139595555 + (TATATG)n Simple_repeat Simple_repeat 2 177 0 5 683 366 315 11 100 chr5 12941734 12941914 -139595345 - RSINE1 SINE B4 0 165 2 5 683 333 269 136 15 chr5 12942021 12942153 -139595106 + B1F SINE Alu 1 148 -1 5 683 326 352 37 0 chr5 12943252 12943360 -139593899 + ID_B1 SINE B4 59 170 -54 5 683 227 69 0 0 chr5 12944956 12944985 -139592274 - L1_Mus1 LINE L1 -449 6118 6090 5 683 226 33 33 0 chr5 12944972 12945002 -139592257 - L1_Mus1 LINE L1 -797 5841 5811 5 683 601 55 22 0 chr5 12945002 12945093 -139592166 + L1_Mus1 LINE L1 6463 6555 -12 5 683 27 29 0 0 chr5 12945093 12945127 -139592132 + AT_rich Low_complexity Low_complexity 1 34 0 5 683 376 311 153 6 chr5 12945530 12945715 -139591544 - L1MC4 LINE L1 -398 7644 7443 5 683 279 0 0 0 chr5 12945715 12945746 -139591513 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 683 376 311 153 6 chr5 12945746 12945912 -139591347 - L1MC4 LINE L1 -600 7442 7241 5 683 509 135 26 18 chr5 12947332 12947445 -139589814 + CT-rich Low_complexity Low_complexity 4 117 0 5 683 1086 122 0 0 chr5 12947456 12947636 -139589623 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 683 947 114 11 28 chr5 12947641 12947822 -139589437 + CT-rich Low_complexity Low_complexity 3 180 0 5 683 214 352 33 33 chr5 12947889 12947980 -139589279 - B1F1 SINE Alu -49 100 10 5 683 512 310 67 58 chr5 12949618 12949858 -139587401 - MER2 DNA MER2_type -3 342 101 5 683 21 71 0 0 chr5 12951395 12951437 -139585822 + AT_rich Low_complexity Low_complexity 1 42 0 5 683 357 264 65 11 chr5 12951541 12951633 -139585626 - B4A SINE B4 0 292 196 5 683 358 328 26 25 chr5 12951801 12952029 -139585230 - L1MB7 LINE L1 -304 5880 5652 5 683 306 252 128 83 chr5 12952045 12952063 -139585196 - MT2B LTR ERVL -262 339 177 5 683 748 178 7 22 chr5 12952063 12952201 -139585058 - B1_Mur2 SINE Alu -1 148 13 5 683 432 0 0 0 chr5 12952256 12952304 -139584955 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 683 396 0 0 0 chr5 12952346 12952390 -139584869 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 683 7673 179 47 7 chr5 12952391 12953986 -139583273 - L1_Mur1 LINE L1 -3025 2861 1203 5 683 5017 249 60 50 chr5 12953957 12956353 -139580906 - Lx7 LINE L1 -651 7045 4630 5 683 341 308 23 0 chr5 12956362 12956495 -139580764 - L1MB7 LINE L1 -1270 4876 4741 5 683 1621 235 61 0 chr5 12956508 12956853 -139580406 + ORR1B2 LTR MaLR 2 367 0 6 683 3485 222 86 23 chr5 12956855 12957822 -139579437 + ORR1B2-int LTR MaLR 3 939 -570 6 683 4145 51 0 8 chr5 12957822 12958338 -139578921 + L1Md_F2 LINE L1 6071 6582 0 6 683 2483 265 77 63 chr5 12958338 12958858 -139578401 + ORR1B2-int LTR MaLR 935 1530 -262 6 683 3347 33 2 0 chr5 12958858 12959253 -139578006 + MTA_Mm LTR MaLR 1 396 0 6 683 2483 202 43 43 chr5 12959253 12959592 -139577667 + ORR1B2-int LTR MaLR 1168 1509 0 6 683 1750 160 96 9 chr5 12959594 12959928 -139577331 + ORR1B2 LTR MaLR 3 365 -2 6 683 1795 208 101 23 chr5 12960902 12961287 -139575972 - MTC LTR MaLR -6 415 1 6 683 269 105 25 38 chr5 12962014 12962093 -139575166 + (TTTG)n Simple_repeat Simple_repeat 2 79 0 6 683 1102 82 7 0 chr5 12962098 12962244 -139575015 - B1_Mus1 SINE Alu 0 148 2 6 683 227 31 0 30 chr5 12962423 12962456 -139574803 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 6 683 265 349 93 81 chr5 12962462 12962698 -139574561 + RSINE1 SINE B4 54 292 0 6 683 1958 188 85 15 chr5 12964740 12965135 -139572124 + MTC LTR MaLR 1 403 -18 6 683 1691 143 114 74 chr5 12965178 12965571 -139571688 + RLTR9E LTR ERVK 1 409 0 6 683 1038 264 62 62 chr5 12965786 12966218 -139571041 + RLTR12B LTR ERVK 55 486 -42 6 683 399 263 22 22 chr5 12966523 12966659 -139570600 + Lx7 LINE L1 7539 7674 -22 6 683 254 314 23 0 chr5 12967173 12967259 -139570000 + GA-rich Low_complexity Low_complexity 3 90 0 6 683 201 314 24 24 chr5 12967528 12967655 -139569604 + CT-rich Low_complexity Low_complexity 4 130 0 6 683 401 36 18 0 chr5 12968070 12968125 -139569134 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 683 317 257 75 92 chr5 12968141 12968261 -139568998 - MLT1J1 LTR MaLR -238 206 89 6 683 681 204 0 47 chr5 12970276 12970425 -139566834 + B1_Mur2 SINE Alu 1 142 -7 6 683 361 369 81 8 chr5 12971914 12972149 -139565110 + L2 LINE L2 2194 2445 -974 6 683 2398 72 0 9 chr5 12972149 12972470 -139564789 + L1_Mus2 LINE L1 6238 6555 -11 6 683 385 328 16 8 chr5 12973214 12973337 -139563922 + B1F SINE Alu 18 141 -8 6 683 261 348 33 11 chr5 12974872 12974962 -139562297 + PB1D10 SINE Alu 3 94 -23 6 85 1872 175 41 69 chr5 12976052 12976470 -139560789 - MTC LTR MaLR -3 418 13 6 684 1071 177 21 0 chr5 12977712 12977904 -139559355 - RLTR11A2 LTR ERVK -25 502 307 6 684 180 125 0 0 chr5 12977930 12977962 -139559297 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 684 31 0 0 0 chr5 12978317 12978348 -139558911 + AT_rich Low_complexity Low_complexity 1 31 0 6 684 512 348 61 12 chr5 12978371 12978534 -139558725 - B3A SINE B2 -27 171 1 6 684 1503 199 35 56 chr5 12980143 12980201 -139557058 + ORR1C2 LTR MaLR 50 106 -278 6 684 4526 4 2 0 chr5 12980201 12980706 -139556553 - L1Md_A LINE L1 0 6582 6077 6 684 1503 199 35 56 chr5 12980706 12980937 -139556322 + ORR1C2 LTR MaLR 107 346 -38 6 684 1229 120 44 0 chr5 12980937 12981120 -139556139 + B2_Mm2 SINE B2 3 193 -2 6 684 1503 199 35 56 chr5 12981120 12981169 -139556090 + ORR1C2 LTR MaLR 347 382 -2 6 684 22 0 0 0 chr5 12981523 12981545 -139555714 + AT_rich Low_complexity Low_complexity 1 22 0 6 684 182 355 115 6 chr5 12981701 12981857 -139555402 + L3 LINE CR1 3233 3405 -1084 6 684 3034 63 15 2 chr5 12982661 12983056 -139554203 - MTB LTR MaLR 0 400 1 6 684 955 208 83 43 chr5 12983057 12983359 -139553900 - Lx9 LINE L1 -1663 5981 5668 6 684 207 25 24 48 chr5 12983370 12983412 -139553847 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 6 684 1164 41 0 0 chr5 12983414 12983560 -139553699 + (CAAAG)n Simple_repeat Simple_repeat 2 147 0 6 684 1497 309 29 14 chr5 12983659 12984141 -139553118 + Lx9 LINE L1 6443 6931 -713 6 684 772 172 22 28 chr5 12984155 12984334 -139552925 - Lx2 LINE L1 -1 6996 6819 6 684 3011 152 11 5 chr5 12984347 12984888 -139552371 + Lx2 LINE L1 5785 6331 -666 6 684 1507 255 48 38 chr5 12984884 12985462 -139551797 + Lx9 LINE L1 6921 7504 -140 6 684 1037 94 0 0 chr5 12985631 12985769 -139551490 + B1_Mus2 SINE Alu 1 138 -9 6 684 248 53 26 0 chr5 12985769 12985807 -139551452 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 684 22 88 0 0 chr5 12986449 12986506 -139550753 + AT_rich Low_complexity Low_complexity 1 57 0 6 684 540 322 10 10 chr5 12986559 12986798 -139550461 - L1_Mur3 LINE L1 -642 5658 5440 6 684 22 56 0 0 chr5 12986951 12986987 -139550272 + AT_rich Low_complexity Low_complexity 1 36 0 6 684 2008 159 11 22 chr5 12987360 12987721 -139549538 - ORR1B2 LTR MaLR -8 359 3 6 684 2911 148 20 142 chr5 12987723 12988377 -139548882 - ORR1B2-int LTR MaLR 0 1509 936 6 684 687 319 60 46 chr5 12988375 12988658 -139548601 + MTE2a LTR MaLR 91 377 -2 6 684 330 87 0 0 chr5 12988986 12989032 -139548227 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 684 350 227 27 118 chr5 12989415 12989525 -139547734 - B1_Mur1 SINE Alu -1 148 17 6 684 270 228 62 111 chr5 12989570 12989757 -139547502 + B4A SINE B4 1 175 -117 6 684 367 152 114 0 chr5 12990553 12990632 -139546627 - Lx9 LINE L1 -8 7636 7549 6 684 348 222 0 0 chr5 12990645 12990726 -139546533 - Lx9 LINE L1 -167 7477 7397 6 684 282 138 0 0 chr5 12990954 12991012 -139546247 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 6 684 227 297 17 57 chr5 12991012 12991187 -139546072 - RLTR15 LTR ERVK -191 168 1 6 684 1498 223 10 10 chr5 12991189 12991493 -139545766 - Lx9 LINE L1 -240 7404 7101 6 684 21 0 0 0 chr5 12991637 12991658 -139545601 + AT_rich Low_complexity Low_complexity 1 21 0 6 684 33 66 0 0 chr5 12992838 12992899 -139544360 + AT_rich Low_complexity Low_complexity 1 61 0 6 684 488 257 92 37 chr5 12994339 12994557 -139542702 + Lx3C LINE L1 6746 6975 -1 6 684 180 0 0 0 chr5 12994829 12994849 -139542410 + (CAAAT)n Simple_repeat Simple_repeat 2 21 0 6 684 1389 335 51 42 chr5 12994960 12995649 -139541610 + RMER1B Other Other 1 524 -542 6 684 2023 242 62 16 chr5 12995654 12996377 -139540882 + RMER1A Other Other 110 743 -287 6 684 351 0 0 0 chr5 12996377 12996416 -139540843 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 684 2023 229 51 14 chr5 12996416 12996475 -139540784 + RMER1A Other Other 744 800 -230 6 684 480 209 3 3 chr5 12999259 12999361 -139537898 - B1_Mus2 SINE Alu -7 142 41 6 684 256 176 76 63 chr5 12999297 12999376 -139537883 - RLTR25B LTR ERVK -519 509 430 6 684 29 0 0 0 chr5 13000279 13000308 -139536951 + AT_rich Low_complexity Low_complexity 1 29 0 1 684 25 0 0 0 chr5 13000340 13000365 -139536894 + AT_rich Low_complexity Low_complexity 1 25 0 2 684 2056 340 65 27 chr5 13000553 13001549 -139535710 - Lx8 LINE L1 -127 7346 6313 3 684 455 293 19 29 chr5 13002151 13002383 -139534876 + L1M4 LINE L1 5554 5773 -406 4 684 23 0 0 0 chr5 13002570 13002593 -139534666 + AT_rich Low_complexity Low_complexity 1 23 0 5 684 490 246 54 18 chr5 13002601 13002713 -139534546 + B1F SINE Alu 11 126 -23 6 684 23 0 0 0 chr5 13003145 13003168 -139534091 + AT_rich Low_complexity Low_complexity 1 23 0 7 684 210 301 186 0 chr5 13003875 13004031 -139533228 - MIRb SINE MIR -38 224 40 8 684 3246 35 25 0 chr5 13004465 13004866 -139532393 + RLTR10A LTR ERVK 1 411 0 9 684 248 312 39 78 chr5 13007934 13008087 -139529172 - B1F1 SINE Alu 0 149 3 1 684 747 219 58 50 chr5 13010164 13010404 -139526855 - Lx7 LINE L1 0 7696 7455 1 684 294 321 35 52 chr5 13010527 13010543 -139526716 - PB1D10 SINE Alu 0 117 5 1 684 327 284 91 40 chr5 13010543 13010642 -139526617 - ID_B1 SINE B4 -35 189 86 1 684 213 151 0 0 chr5 13010651 13010704 -139526555 + A-rich Low_complexity Low_complexity 1 53 0 1 684 213 208 0 0 chr5 13010708 13010756 -139526503 + (CAAA)n Simple_repeat Simple_repeat 3 50 0 1 684 291 350 37 12 chr5 13011025 13011106 -139526153 + B1F1 SINE Alu 9 91 -58 1 684 21 57 0 0 chr5 13011786 13011821 -139525438 + AT_rich Low_complexity Low_complexity 1 35 0 1 684 1942 144 3 82 chr5 13012425 13012789 -139524470 - L1_Mm LINE L1 -263 5620 5286 1 684 796 217 7 0 chr5 13012792 13012935 -139524324 + B3 SINE B2 70 213 -3 1 684 284 382 30 48 chr5 13013010 13013175 -139524084 - B4A SINE B4 0 292 131 2 684 21 36 0 0 chr5 13013681 13013709 -139523550 + AT_rich Low_complexity Low_complexity 1 28 0 2 684 288 208 0 0 chr5 13013795 13013891 -139523368 + T-rich Low_complexity Low_complexity 1 96 0 2 684 180 0 0 0 chr5 13013974 13013994 -139523265 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 684 970 28 35 0 chr5 13014003 13014145 -139523114 + (TAGA)n Simple_repeat Simple_repeat 4 150 0 2 684 390 187 0 0 chr5 13014163 13014254 -139523005 + (TA)n Simple_repeat Simple_repeat 1 91 0 2 684 286 314 110 23 chr5 13014257 13014430 -139522829 + MLT1A LTR MaLR 13 200 -174 2 684 268 300 52 30 chr5 13014441 13014575 -139522684 + MLT1A LTR MaLR 229 365 0 2 684 5383 3 0 0 chr5 13014578 13015212 -139522047 + L1_Mm LINE L1 1386 2019 -3864 2 684 457 350 58 89 chr5 13015840 13016097 -139521162 + B4A SINE B4 6 254 -38 2 684 854 340 56 38 chr5 13016250 13016800 -139520459 + HERVL74-int LTR ERVL 3205 3764 -1921 2 684 2670 29 0 0 chr5 13017121 13017429 -139519830 + L1Md_F2 LINE L1 5279 5586 -297 3 684 8273 31 1 9 chr5 13017430 13018430 -139518829 + L1Md_F2 LINE L1 5588 6579 -3 3 684 540 322 28 11 chr5 13018575 13018757 -139518502 + HERVL74-int LTR ERVL 4151 4335 -1350 2 684 3568 73 16 14 chr5 13020057 13020568 -139516691 - L1VL4 LINE L1 -4 3555 3044 3 684 5869 104 72 1 chr5 13020569 13021527 -139515732 - L1VL4 LINE L1 -2506 1053 29 3 684 413 295 42 99 chr5 13021577 13021769 -139515490 + MER58A DNA MER1_type 21 201 -23 3 684 526 192 7 88 chr5 13021749 13021886 -139515373 - RLTR20B3 LTR ERVK -450 127 2 3 684 323 294 211 27 chr5 13022413 13022745 -139514514 + L2 LINE L2 1392 1784 -1635 3 684 419 197 31 37 chr5 13023017 13023121 -139514138 - RLTR20A1 LTR ERVK 0 551 436 3 684 294 29 0 0 chr5 13023274 13023309 -139513950 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 684 23 0 0 0 chr5 13024127 13024150 -139513109 + AT_rich Low_complexity Low_complexity 1 23 0 3 684 198 71 0 0 chr5 13024188 13024216 -139513043 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 684 285 304 108 61 chr5 13024434 13024665 -139512594 + MLT1K LTR MaLR 280 521 -74 3 684 3201 57 2 0 chr5 13024732 13025137 -139512122 + L1Md_F2 LINE L1 6165 6570 -12 4 684 338 269 90 27 chr5 13025424 13025535 -139511724 - B1F SINE Alu -11 138 21 4 684 230 253 84 48 chr5 13025464 13025547 -139511712 + YREP_Mm Unknown Unknown 222 307 -1505 4 684 399 275 120 54 chr5 13026474 13026716 -139510543 - MER44B DNA MER2_type 0 550 293 4 684 287 330 70 0 chr5 13026787 13026902 -139510357 - MER44B DNA MER2_type -250 300 178 4 684 1833 55 142 0 chr5 13027279 13027532 -139509727 - L1_Mus1 LINE L1 0 6567 6279 4 684 1141 62 0 0 chr5 13027534 13027680 -139509579 - B1_Mus2 SINE Alu 0 147 2 4 684 1079 253 171 10 chr5 13027712 13027969 -139509290 - Lx9 LINE L1 -9 7635 7348 4 684 207 0 0 0 chr5 13027969 13027992 -139509267 + (TCTCCC)n Simple_repeat Simple_repeat 4 26 0 4 684 1079 253 171 10 chr5 13027992 13028149 -139509110 - Lx9 LINE L1 -297 7347 7155 4 684 1118 231 75 31 chr5 13028151 13028473 -139508786 - BGLII_B LTR ERVK 0 441 106 4 684 504 0 0 0 chr5 13028656 13028712 -139508547 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 684 331 182 222 22 chr5 13028786 13028921 -139508338 + Lx7 LINE L1 7535 7696 0 5 684 207 0 0 0 chr5 13029472 13029495 -139507764 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 684 289 274 10 10 chr5 13029722 13029825 -139507434 - Lx9 LINE L1 -2 7642 7540 5 684 302 261 150 18 chr5 13029931 13030044 -139507215 - Lx9 LINE L1 -291 7353 7226 5 684 357 296 212 0 chr5 13030439 13030571 -139506688 - ORR1D1 LTR MaLR -212 162 3 5 684 222 156 64 43 chr5 13030646 13030693 -139506566 + B4A SINE B4 6 53 -239 5 684 221 311 10 79 chr5 13031480 13031598 -139505661 - MIRc SINE MIR -103 165 52 5 684 22 0 0 0 chr5 13031735 13031757 -139505502 + AT_rich Low_complexity Low_complexity 1 22 0 5 684 271 347 42 0 chr5 13031994 13032089 -139505170 + RSINE1 SINE B4 27 125 -40 5 684 321 26 0 0 chr5 13032101 13032139 -139505120 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 684 483 18 0 0 chr5 13032988 13033044 -139504215 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 684 238 286 0 13 chr5 13036921 13036999 -139500260 - Lx7 LINE L1 -16 7680 7604 6 684 1059 71 0 0 chr5 13037045 13037186 -139500073 + (TCCCC)n Simple_repeat Simple_repeat 3 143 0 6 684 266 155 35 0 chr5 13037192 13037250 -139500009 + CT-rich Low_complexity Low_complexity 2 61 0 6 684 24 53 0 0 chr5 13039108 13039146 -139498113 + AT_rich Low_complexity Low_complexity 1 38 0 6 684 541 299 52 0 chr5 13039157 13039311 -139497948 - RSINE1 SINE B4 0 165 4 6 684 196 291 133 87 chr5 13039533 13039706 -139497553 + L2c LINE L2 3184 3364 -23 6 684 633 27 0 0 chr5 13040241 13040316 -139496943 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 6 684 875 333 57 32 chr5 13040369 13040673 -139496586 - L1MB1 LINE L1 -70 6098 5774 6 684 192 97 0 0 chr5 13040673 13040704 -139496555 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6 684 875 333 57 32 chr5 13040704 13041124 -139496135 - L1MB1 LINE L1 -395 5773 5356 6 684 255 236 66 22 chr5 13041179 13041270 -139495989 - L1M4 LINE L1 -1886 4260 4166 6 684 201 103 25 25 chr5 13041403 13041443 -139495816 + (TTG)n Simple_repeat Simple_repeat 1 40 0 7 684 40 21 0 0 chr5 13041904 13041951 -139495308 + AT_rich Low_complexity Low_complexity 1 47 0 7 684 926 63 8 0 chr5 13042089 13042215 -139495044 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 7 684 227 186 16 33 chr5 13043739 13043800 -139493459 + (GTTTG)n Simple_repeat Simple_repeat 2 61 0 7 684 1423 218 97 55 chr5 13043805 13044257 -139493002 + RLTR20B3 LTR ERVK 1 471 -106 7 684 218 105 26 0 chr5 13044260 13044298 -139492961 + (TCTCC)n Simple_repeat Simple_repeat 3 41 0 7 684 328 239 106 35 chr5 13044311 13044424 -139492835 - HAL1-3A_ME LINE L1 -72 2786 2666 7 684 350 286 21 32 chr5 13044447 13044541 -139492718 + RLTR20B3 LTR ERVK 471 563 0 7 684 292 333 62 8 chr5 13044975 13045105 -139492154 - L1M3d LINE L1 -5514 377 241 7 684 3259 51 2 0 chr5 13045305 13045700 -139491559 + MTA_Mm LTR MaLR 1 396 0 7 684 338 276 57 0 chr5 13046714 13046819 -139490440 - PB1D10 SINE Alu -2 115 5 7 684 4577 73 37 2 chr5 13046844 13047464 -139489795 + L1Md_F2 LINE L1 5938 6579 -3 8 684 187 73 0 68 chr5 13047578 13047622 -139489637 + (TCTCCC)n Simple_repeat Simple_repeat 4 44 0 8 684 475 276 44 59 chr5 13047635 13047770 -139489489 - B1F1 SINE Alu -14 135 3 8 684 238 299 26 13 chr5 13048056 13048134 -139489125 - ORR1D1 LTR MaLR -13 357 279 8 684 1022 135 6 0 chr5 13048136 13048314 -139488945 + (GA)n Simple_repeat Simple_repeat 2 180 0 8 684 652 298 42 0 chr5 13048317 13048485 -139488774 - ORR1D1 LTR MaLR -199 175 1 8 684 222 37 0 0 chr5 13048956 13048983 -139488276 + (TAA)n Simple_repeat Simple_repeat 2 28 0 8 684 351 0 0 0 chr5 13050021 13050060 -139487199 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 684 285 29 0 0 chr5 13050316 13050350 -139486909 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 8 684 243 0 0 0 chr5 13050350 13050377 -139486882 + (TCC)n Simple_repeat Simple_repeat 1 27 0 8 684 1161 118 0 0 chr5 13050377 13050555 -139486704 + (TTC)n Simple_repeat Simple_repeat 2 179 0 8 684 2805 84 37 5 chr5 13050555 13051042 -139486217 - L1Md_F2 LINE L1 0 6582 6162 9 684 343 141 42 49 chr5 13051042 13051101 -139486158 + polypyrimidine Low_complexity Low_complexity 3 63 0 9 684 261 291 23 0 chr5 13051102 13051188 -139486071 + CT-rich Low_complexity Low_complexity 2 89 0 9 684 30 45 0 0 chr5 13051571 13051615 -139485644 + AT_rich Low_complexity Low_complexity 1 44 0 9 684 27 0 0 0 chr5 13051768 13051795 -139485464 + AT_rich Low_complexity Low_complexity 1 27 0 9 684 39515 29 4 6 chr5 13051809 13057978 -139479281 - L1Md_T LINE L1 0 6582 431 9 684 509 0 16 0 chr5 13058245 13058306 -139478953 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 684 738 179 6 12 chr5 13058701 13058871 -139478388 + CT-rich Low_complexity Low_complexity 3 171 0 9 684 1009 307 40 30 chr5 13061105 13061478 -139475781 - MTE2a LTR MaLR -2 377 1 9 684 201 39 0 0 chr5 13062236 13062262 -139474997 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 9 684 245 271 59 0 chr5 13062399 13062484 -139474775 + Charlie2b DNA MER1_type 1825 1914 -868 1 684 309 304 13 52 chr5 13062490 13062719 -139474540 - L1M2 LINE L1 -1376 4767 4548 1 684 568 291 128 62 chr5 13063046 13063398 -139473861 + MTEb LTR MaLR 1 375 -4 1 684 493 258 215 25 chr5 13064313 13064476 -139472783 + B3 SINE B2 2 195 -21 1 684 398 343 54 17 chr5 13064821 13065061 -139472198 + L1MC LINE L1 5348 5596 -2286 1 684 315 0 0 0 chr5 13065147 13065182 -139472077 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 684 308 272 43 9 chr5 13065381 13065496 -139471763 + (TATATG)n Simple_repeat Simple_repeat 4 122 0 1 684 31 0 0 0 chr5 13065888 13065919 -139471340 + AT_rich Low_complexity Low_complexity 1 31 0 1 684 354 267 26 112 chr5 13065968 13066120 -139471139 - RSINE1 SINE B4 0 165 27 1 684 251 216 106 18 chr5 13066357 13066470 -139470789 - Lx9 LINE L1 -1 7643 7521 1 684 432 0 0 0 chr5 13066472 13066520 -139470739 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 684 847 178 4 11 chr5 13067873 13068151 -139469108 + (TG)n Simple_repeat Simple_repeat 1 275 0 1 684 21 0 0 0 chr5 13068465 13068486 -139468773 + AT_rich Low_complexity Low_complexity 1 21 0 1 684 17747 138 175 10 chr5 13068661 13073890 -139463369 - L1_Mus3 LINE L1 0 6641 528 1 684 505 286 47 57 chr5 13074202 13074395 -139462864 - B3A SINE B2 -3 213 23 1 684 304 22 44 0 chr5 13074497 13074542 -139462717 + (TAAAA)n Simple_repeat Simple_repeat 2 48 0 1 684 226 280 75 65 chr5 13076457 13076564 -139460695 - ORR1D1 LTR MaLR -188 186 79 1 684 2268 149 63 0 chr5 13077403 13077798 -139459461 - Lx2B LINE L1 -247 6753 6334 1 684 328 131 0 28 chr5 13077799 13077870 -139459389 + Lx2B LINE L1 6932 7000 0 1 684 215 103 0 0 chr5 13077871 13077900 -139459359 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 1 684 504 216 13 7 chr5 13077907 13078061 -139459198 + GA-rich Low_complexity Low_complexity 3 157 0 1 684 1309 39 4 4 chr5 13078062 13078322 -139458937 + (GAAA)n Simple_repeat Simple_repeat 1 260 0 1 684 7540 99 18 16 chr5 13078870 13080470 -139456789 - L1_Mus3 LINE L1 -1 6637 5046 1 684 3129 42 5 13 chr5 13080890 13081278 -139455981 + IAPEY_LTR LTR ERVK 1 385 0 1 684 344 347 0 0 chr5 13081725 13081875 -139455384 + (TGG)n Simple_repeat Simple_repeat 1 150 0 1 684 3905 101 3 17 chr5 13081925 13082519 -139454740 + RLTR19-int LTR ERVK 1427 2012 -4125 1 684 1486 194 25 56 chr5 13082995 13083318 -139453941 + ORR1C1 LTR MaLR 65 377 -1 1 684 1983 246 108 70 chr5 13083499 13084238 -139453021 + Lx7 LINE L1 6930 7696 0 1 684 861 163 308 0 chr5 13085758 13085979 -139451280 + Lx7 LINE L1 6805 7093 -603 1 684 1228 96 62 0 chr5 13086164 13086341 -139450918 + B2_Mm2 SINE B2 1 188 -7 1 684 234 0 0 0 chr5 13086841 13086867 -139450392 + (TA)n Simple_repeat Simple_repeat 1 26 0 1 684 253 265 12 0 chr5 13086921 13087004 -139450255 - Lx9 LINE L1 -34 7610 7527 1 684 2804 282 20 15 chr5 13087011 13087860 -139449399 - Lx9 LINE L1 -249 7395 6543 1 684 324 275 101 88 chr5 13087894 13088121 -139449138 + MT2B2 LTR ERVL 49 278 -306 1 684 1006 99 0 0 chr5 13088006 13088148 -139449111 + B1_Mus1 SINE Alu 7 148 0 1 684 285 51 0 0 chr5 13088148 13088187 -139449072 + (A)n Simple_repeat Simple_repeat 1 39 0 1 684 198 91 0 0 chr5 13088201 13088234 -139449025 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1 684 195 186 0 0 chr5 13088234 13088277 -139448982 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 684 225 293 6 81 chr5 13088361 13088521 -139448738 - Lx9 LINE L1 -1431 6213 6066 1 684 24 67 0 0 chr5 13088948 13088993 -139448266 + AT_rich Low_complexity Low_complexity 1 45 0 1 684 27 62 0 0 chr5 13089468 13089516 -139447743 + AT_rich Low_complexity Low_complexity 1 48 0 1 684 924 112 97 0 chr5 13089625 13089759 -139447500 + Lx2 LINE L1 6498 6644 -353 1 684 1084 168 35 20 chr5 13089757 13089957 -139447302 + Lx2 LINE L1 6775 6977 -20 1 684 1026 129 0 2 chr5 13090012 13090517 -139446742 + (TG)n Simple_repeat Simple_repeat 1 504 0 1 684 704 294 0 11 chr5 13090518 13090700 -139446559 - B3A SINE B2 -18 180 1 1 684 341 140 0 0 chr5 13092167 13092217 -139445042 + B1_Mus2 SINE Alu 1 50 -97 1 684 2850 104 10 5 chr5 13092224 13092639 -139444620 - L1_Mus2 LINE L1 -14 6552 6136 1 684 1966 181 118 0 chr5 13092639 13093070 -139444189 - L1_Mm LINE L1 -494 5389 4908 1 684 344 78 0 19 chr5 13093068 13093120 -139444139 - L1_Mur3 LINE L1 -1324 4556 4506 1 684 7946 176 16 66 chr5 13093121 13094492 -139442767 - L1_Mur1 LINE L1 -1735 4151 2782 1 684 1117 90 0 0 chr5 13094492 13094637 -139442622 + B1_Mus2 SINE Alu 1 145 -2 1 684 7946 176 16 66 chr5 13094637 13095104 -139442155 - L1_Mur1 LINE L1 -3105 2781 2405 1 684 484 120 390 8 chr5 13095106 13095224 -139442035 + L1VL1 LINE L1 156 318 -6104 1 684 24431 117 37 18 chr5 13095211 13099989 -139437270 + L1Md_F2 LINE L1 715 5585 -298 1 684 7875 59 2 0 chr5 13099990 13100972 -139436287 + L1Md_F2 LINE L1 5587 6570 -12 1 684 7075 122 23 5 chr5 13100975 13102938 -139434321 - L1VL2 LINE L1 -1501 2114 126 1 684 1229 234 35 28 chr5 13103185 13103493 -139433766 + ORR1B1 LTR MaLR 57 347 -23 1 684 7961 44 2 2 chr5 13103493 13104522 -139432737 - L1Md_F2 LINE L1 -25 6557 5529 1 684 5521 43 0 4 chr5 13104522 13105203 -139432056 + L1Md_F2 LINE L1 4883 5560 -323 1 684 1774 256 135 2 chr5 13105205 13105687 -139431572 - Lx6 LINE L1 -2 7458 6913 1 684 214 149 0 41 chr5 13106942 13106991 -139430268 + T-rich Low_complexity Low_complexity 5 51 0 1 685 564 326 6 17 chr5 13107457 13107635 -139429624 - MER58A DNA MER1_type -38 186 11 1 685 29 47 0 0 chr5 13108437 13108480 -139428779 + AT_rich Low_complexity Low_complexity 1 43 0 1 685 21 36 0 0 chr5 13109827 13109855 -139427404 + AT_rich Low_complexity Low_complexity 1 28 0 1 685 22 35 0 0 chr5 13110228 13110257 -139427002 + AT_rich Low_complexity Low_complexity 1 29 0 1 685 233 158 52 17 chr5 13111725 13111783 -139425476 - Cheshire DNA MER1_type -822 1598 1539 1 685 249 33 0 0 chr5 13112027 13112057 -139425202 + (T)n Simple_repeat Simple_repeat 1 30 0 1 685 678 276 79 29 chr5 13112361 13112789 -139424470 - Lx7 LINE L1 -2 7471 6999 1 685 1020 267 27 20 chr5 13112840 13113224 -139424035 - Lx7 LINE L1 -1841 5855 5501 1 685 1393 176 139 36 chr5 13113281 13113640 -139423619 + RMER10B LTR ERVL 1 396 -2 1 685 730 325 91 56 chr5 13114818 13115226 -139422033 + MER82 DNA MER2_type 1 422 -231 1 685 336 265 0 20 chr5 13115226 13115376 -139421883 + CT-rich Low_complexity Low_complexity 3 149 0 1 685 350 266 62 48 chr5 13115377 13115523 -139421736 + RMER1C Other Other 1193 1340 -2 1 685 196 30 0 57 chr5 13115524 13115559 -139421700 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 1 685 237 271 33 56 chr5 13115689 13115779 -139421480 - MTE2a LTR MaLR -14 365 278 1 685 1219 90 22 0 chr5 13115912 13116090 -139421169 + B2_Mm1a SINE B2 2 183 -10 1 685 3713 42 15 9 chr5 13116099 13116558 -139420701 + L1_Mus1 LINE L1 6106 6567 0 1 685 254 45 23 0 chr5 13116571 13116630 -139420629 + L1Md_F2 LINE L1 6528 6582 0 1 685 252 86 0 0 chr5 13117113 13117148 -139420111 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 685 1775 195 37 42 chr5 13118115 13118522 -139418737 - MTB_Mm LTR MaLR -2 405 1 1 685 421 266 121 72 chr5 13119062 13119228 -139418031 + B3A SINE B2 9 182 -16 1 685 510 149 0 0 chr5 13119231 13119318 -139417941 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 1 685 2164 202 45 0 chr5 13123271 13123712 -139413547 - RLTR31A_Mm LTR ERVK -123 461 1 1 685 347 289 0 0 chr5 13123732 13123829 -139413430 + (TGG)n Simple_repeat Simple_repeat 1 97 0 1 685 263 365 43 21 chr5 13123833 13123973 -139413286 - B1F2 SINE Alu -6 143 1 1 685 247 118 22 76 chr5 13124116 13124208 -139413051 + (TTATA)n Simple_repeat Simple_repeat 2 88 0 1 685 202 228 39 10 chr5 13130071 13130173 -139407086 + CT-rich Low_complexity Low_complexity 2 106 0 1 685 304 307 11 49 chr5 13130184 13130200 -139407059 + polypyrimidine Low_complexity Low_complexity 164 179 0 1 685 589 47 24 0 chr5 13130200 13130285 -139406974 + (TCCC)n Simple_repeat Simple_repeat 1 87 0 1 685 304 338 5 36 chr5 13130285 13130534 -139406725 + CT-rich Low_complexity Low_complexity 1 241 0 1 685 274 359 73 95 chr5 13132395 13132669 -139404590 - ORR1E LTR MaLR -5 354 87 1 685 1591 188 109 3 chr5 13133287 13133618 -139403641 - ORR1B2 LTR MaLR -1 366 1 1 685 781 324 59 71 chr5 13134480 13134848 -139402411 + MTD LTR MaLR 1 403 -16 1 685 325 245 2 74 chr5 13136299 13136425 -139400834 + MTD LTR MaLR 1 114 -293 1 685 229 282 15 95 chr5 13136475 13136612 -139400647 + Lx9 LINE L1 7347 7472 -172 1 685 201 74 0 0 chr5 13136617 13136644 -139400615 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 685 998 277 70 44 chr5 13136768 13137111 -139400148 + MTD LTR MaLR 68 419 0 1 685 2967 132 40 42 chr5 13140105 13140633 -139396626 - Lx LINE L1 -5 6649 6123 1 685 3022 159 4 4 chr5 13140636 13141161 -139396098 - L1_Mm LINE L1 -787 5096 4572 1 685 4935 160 21 0 chr5 13141160 13142042 -139395217 + L1_Mur2 LINE L1 3546 4446 -1431 1 685 215 61 30 0 chr5 13142674 13142707 -139394552 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 685 541 291 66 17 chr5 13142761 13143025 -139394234 - L1MA4A LINE L1 -379 5918 5633 1 685 21 0 0 0 chr5 13143093 13143114 -139394145 + AT_rich Low_complexity Low_complexity 1 21 0 1 685 3036 73 30 0 chr5 13143281 13143678 -139393581 + L1_Mus1 LINE L1 6159 6567 0 1 685 441 0 0 0 chr5 13144063 13144112 -139393147 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 685 191 61 30 0 chr5 13144675 13144708 -139392551 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 685 234 0 0 0 chr5 13146955 13146981 -139390278 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 1 685 288 0 0 0 chr5 13147388 13147420 -139389839 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 685 21 36 0 0 chr5 13148059 13148087 -139389172 + AT_rich Low_complexity Low_complexity 1 28 0 2 685 479 45 15 0 chr5 13148940 13149006 -139388253 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 685 569 52 13 0 chr5 13150456 13150533 -139386726 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 2 685 1546 180 270 8 chr5 13151959 13152493 -139384766 + RMER6D LTR ERVK 1 678 -12 2 685 29 0 0 0 chr5 13153734 13153763 -139383496 + AT_rich Low_complexity Low_complexity 1 29 0 2 685 187 54 54 0 chr5 13154573 13154610 -139382649 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 685 2477 204 29 50 chr5 13154823 13154973 -139382286 - RLTR20D LTR ERVK 0 568 433 2 685 1121 82 0 0 chr5 13154973 13155120 -139382139 - B1_Mus1 SINE Alu 0 148 2 2 685 2477 217 34 53 chr5 13155120 13155528 -139381731 - RLTR20D LTR ERVK -136 432 60 2 685 618 14 0 0 chr5 13155642 13155713 -139381546 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 685 210 258 0 0 chr5 13155718 13155780 -139381479 + GA-rich Low_complexity Low_complexity 1 62 0 2 685 1226 254 111 28 chr5 13155781 13156170 -139381089 + MTC LTR MaLR 1 421 0 2 685 419 35 18 0 chr5 13156274 13156331 -139380928 + (CA)n Simple_repeat Simple_repeat 1 58 0 2 685 929 136 159 15 chr5 13157111 13157312 -139379947 + RMER1C Other Other 1112 1341 -1 2 685 1956 39 0 0 chr5 13158779 13159010 -139378249 + L1Md_F2 LINE L1 5355 5585 -298 2 685 8115 45 3 2 chr5 13159011 13160006 -139377253 + L1Md_F2 LINE L1 5587 6582 0 2 685 24 32 0 0 chr5 13160804 13160835 -139376424 + AT_rich Low_complexity Low_complexity 1 31 0 2 685 22 56 0 0 chr5 13160989 13161025 -139376234 + AT_rich Low_complexity Low_complexity 1 36 0 2 685 436 327 39 32 chr5 13161416 13161571 -139375688 + RSINE1 SINE B4 6 161 -4 2 685 243 0 0 0 chr5 13161593 13161620 -139375639 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 685 396 0 0 0 chr5 13161620 13161663 -139375596 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 685 1103 75 7 0 chr5 13161852 13161998 -139375261 - B1_Mm SINE Alu 0 147 1 2 685 327 339 81 16 chr5 13163749 13163872 -139373387 - B1_Mur2 SINE Alu -18 131 1 2 685 615 174 0 0 chr5 13165132 13165247 -139372012 + A-rich Low_complexity Low_complexity 1 115 0 2 685 268 268 0 0 chr5 13165457 13165513 -139371746 + polypyrimidine Low_complexity Low_complexity 2 57 0 2 685 917 70 21 7 chr5 13165610 13165754 -139371505 + (TTC)n Simple_repeat Simple_repeat 1 146 0 2 685 549 141 0 0 chr5 13165757 13165856 -139371403 + (TCC)n Simple_repeat Simple_repeat 2 100 0 2 685 279 0 0 0 chr5 13166158 13166189 -139371070 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 685 357 24 0 0 chr5 13166190 13166232 -139371027 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 685 372 198 13 20 chr5 13167807 13167897 -139369362 - B1_Mur2 SINE Alu -1 146 65 2 685 279 0 0 0 chr5 13167936 13167967 -139369292 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 685 334 303 11 43 chr5 13167969 13168062 -139369197 - PB1D10 SINE Alu -26 91 2 2 685 377 291 126 39 chr5 13168923 13169256 -139368003 + L1M3 LINE L1 4062 4423 -1717 2 685 280 282 179 0 chr5 13170104 13170260 -139366999 - L1MB3 LINE L1 -67 6116 5933 2 685 523 268 108 26 chr5 13170421 13170801 -139366458 + L1M3 LINE L1 3991 4401 -1739 2 685 402 348 13 113 chr5 13171125 13171355 -139365904 - B4 SINE B4 -85 207 1 2 685 298 297 25 34 chr5 13171457 13171686 -139365573 - L1MB3 LINE L1 -698 5485 5254 2 685 571 317 87 48 chr5 13171762 13172533 -139364726 - L1MB3 LINE L1 -1017 5129 4323 2 685 294 257 38 0 chr5 13172560 13172665 -139364594 + L1MEf LINE L1 1164 1272 -4928 2 685 214 337 35 59 chr5 13173731 13173816 -139363443 + ID SINE ID 2 84 -140 2 685 263 286 16 0 chr5 13173755 13173818 -139363441 + ID2 SINE ID 20 83 0 2 685 369 0 0 0 chr5 13175502 13175543 -139361716 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 685 205 204 0 20 chr5 13175699 13175749 -139361510 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2 685 2348 132 20 20 chr5 13175769 13176177 -139361082 - Lx3A LINE L1 -7 6974 6567 2 685 732 77 0 0 chr5 13176360 13176464 -139360795 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 2 685 6375 107 61 4 chr5 13176480 13176597 -139360662 - Lx LINE L1 -1 6653 6535 2 685 225 0 0 0 chr5 13176597 13176622 -139360637 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 2 685 6375 107 61 4 chr5 13176622 13177465 -139359794 - Lx LINE L1 -120 6534 5639 2 685 6546 103 33 50 chr5 13177460 13179022 -139358237 - Lx3A LINE L1 -414 6567 5031 2 685 411 320 16 8 chr5 13179207 13179333 -139357926 - RSINE1 SINE B4 -15 150 24 2 685 180 315 95 32 chr5 13179975 13180070 -139357189 - MIRb SINE MIR -36 232 132 2 685 419 297 49 28 chr5 13180139 13180281 -139356978 - B1_Mus1 SINE Alu 0 148 4 2 685 24 0 0 0 chr5 13182072 13182096 -139355163 + AT_rich Low_complexity Low_complexity 1 24 0 2 685 525 361 5 30 chr5 13182291 13182491 -139354768 + ORR1E LTR MaLR 1 195 -164 2 685 324 260 0 22 chr5 13182532 13182713 -139354546 + CT-rich Low_complexity Low_complexity 1 177 0 2 685 217 188 0 20 chr5 13183112 13183161 -139354098 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 2 685 36 112 0 0 chr5 13183729 13183898 -139353361 + AT_rich Low_complexity Low_complexity 1 169 0 2 685 29 47 0 0 chr5 13184044 13184087 -139353172 + AT_rich Low_complexity Low_complexity 1 43 0 2 685 57 47 0 0 chr5 13184259 13184344 -139352915 + AT_rich Low_complexity Low_complexity 1 85 0 2 685 386 277 74 49 chr5 13184473 13184673 -139352586 + Lx8 LINE L1 6604 6798 -898 2 685 734 266 70 60 chr5 13184699 13185014 -139352245 + RLTR20D LTR ERVK 45 362 -189 2 685 1433 213 113 16 chr5 13185014 13185395 -139351864 - RMER16 LTR ERVK 0 533 116 2 685 801 299 12 47 chr5 13185400 13185653 -139351606 + RLTR20D LTR ERVK 325 568 0 2 685 324 343 0 0 chr5 13185724 13185832 -139351427 + Lx8 LINE L1 6884 6991 -482 2 685 409 294 185 18 chr5 13185967 13186189 -139351070 + Lx8 LINE L1 7210 7468 -5 2 685 255 125 0 0 chr5 13187603 13187643 -139349616 + (CAT)n Simple_repeat Simple_repeat 1 40 0 2 685 363 352 63 50 chr5 13188340 13188720 -139348539 - L1M4 LINE L1 -5287 1255 871 2 685 364 301 11 109 chr5 13188733 13188916 -139348343 + RLTR17 LTR ERVK 105 269 -423 2 685 706 276 11 65 chr5 13189028 13189214 -139348045 + RLTR31_Mur LTR ERVK 378 553 0 2 685 207 271 90 33 chr5 13189759 13189881 -139347378 + MIRc SINE MIR 92 220 -42 2 685 649 280 5 27 chr5 13191147 13191334 -139345925 + Lx8 LINE L1 6344 6526 -947 2 685 1558 265 59 14 chr5 13191388 13191813 -139345446 + Lx6 LINE L1 6244 6687 -773 2 685 960 95 0 0 chr5 13191837 13191974 -139345285 + (GGGGA)n Simple_repeat Simple_repeat 5 141 0 2 685 201 94 0 0 chr5 13191974 13192006 -139345253 + (GGAAA)n Simple_repeat Simple_repeat 3 34 0 2 685 268 302 46 30 chr5 13192164 13192468 -139344791 - L1_Mur3 LINE L1 -2508 3372 3064 2 685 180 0 0 0 chr5 13193109 13193129 -139344130 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 685 423 0 0 0 chr5 13193164 13193211 -139344048 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 685 211 324 0 0 chr5 13193551 13193622 -139343637 + A-rich Low_complexity Low_complexity 5 75 0 2 685 2620 40 9 3 chr5 13193666 13193994 -139343265 + L1Md_F2 LINE L1 6253 6582 0 2 685 203 276 0 0 chr5 13194100 13194158 -139343101 + A-rich Low_complexity Low_complexity 1 58 0 2 685 307 325 92 44 chr5 13196053 13196304 -139340955 - L1MC4 LINE L1 -451 7591 7329 2 685 29 0 0 0 chr5 13196371 13196400 -139340859 + AT_rich Low_complexity Low_complexity 1 29 0 2 685 468 0 0 0 chr5 13198564 13198616 -139338643 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 685 181 114 91 0 chr5 13199050 13199094 -139338165 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 2 685 645 47 0 0 chr5 13199098 13199183 -139338076 + (TC)n Simple_repeat Simple_repeat 2 86 0 2 685 337 297 0 0 chr5 13199183 13199257 -139338002 - RSINE1 SINE B4 -77 88 15 2 685 486 0 0 0 chr5 13201144 13201198 -139336061 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 2 685 1660 165 3 31 chr5 13201995 13202314 -139334945 + Lx3B LINE L1 6661 6970 -3 2 685 331 21 0 40 chr5 13202318 13202368 -139334891 + (TAA)n Simple_repeat Simple_repeat 1 48 0 2 685 7050 77 31 8 chr5 13203134 13204206 -139333053 - L1Md_F2 LINE L1 0 6582 5491 2 685 663 13 0 0 chr5 13205195 13205271 -139331988 + (TC)n Simple_repeat Simple_repeat 2 77 0 2 685 195 42 0 0 chr5 13205322 13205346 -139331913 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 685 447 296 17 9 chr5 13206335 13206451 -139330808 + PB1D10 SINE Alu 1 117 0 2 685 3979 122 15 2 chr5 13207024 13207640 -139329619 - Lx2A LINE L1 -4 7004 6381 2 685 17627 97 7 11 chr5 13207642 13209529 -139327730 - L1_Mus1 LINE L1 0 6567 4679 2 685 6897 60 44 5 chr5 13209529 13210423 -139326836 - RLTR13B3 LTR ERVK 0 929 1 2 685 17627 111 8 13 chr5 13210423 13211666 -139325593 - L1_Mus1 LINE L1 -1205 4678 3430 2 685 2700 66 8 3 chr5 13211666 13212030 -139325229 + L1_Mus1 LINE L1 6201 6566 -1 2 685 17627 169 165 11 chr5 13212030 13213953 -139323306 - L1_Mus1 LINE L1 -2454 3432 504 2 685 2612 278 45 26 chr5 13214623 13215397 -139321862 - Lx7 LINE L1 -1022 6674 5882 2 685 7757 39 2 0 chr5 13215397 13216329 -139320930 + L1Md_T LINE L1 5649 6582 0 2 685 2612 285 34 46 chr5 13216329 13216441 -139320818 - Lx7 LINE L1 -1174 5884 5777 2 685 664 228 0 8 chr5 13216406 13216560 -139320699 + Lx2B LINE L1 5657 5840 -451 2 685 2940 107 4 15 chr5 13216570 13216624 -139320635 - Lx LINE L1 -12 6642 6589 2 685 279 0 0 0 chr5 13216624 13216655 -139320604 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 685 2940 107 4 15 chr5 13216655 13217055 -139320204 - Lx LINE L1 -66 6588 6194 2 685 724 292 42 0 chr5 13217189 13217357 -139319902 + B3A SINE B2 1 175 -23 2 685 243 0 0 0 chr5 13217722 13217749 -139319510 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 685 5495 62 0 17 chr5 13217764 13218473 -139318786 - L1Md_T LINE L1 -55 6527 5831 2 685 973 237 5 0 chr5 13219547 13219754 -139317505 + MTC LTR MaLR 3 210 -211 2 685 868 273 81 87 chr5 13219758 13220139 -139317120 + Lx5 LINE L1 6670 7048 -2 2 685 794 210 68 0 chr5 13220156 13220318 -139316941 + MTC LTR MaLR 196 368 -53 2 685 290 274 78 26 chr5 13221095 13221211 -139316048 + B1F SINE Alu 22 143 -6 2 685 33 0 0 0 chr5 13221490 13221523 -139315736 + AT_rich Low_complexity Low_complexity 1 33 0 2 685 263 274 0 0 chr5 13222412 13222474 -139314785 + MLT1D LTR MaLR 130 191 -436 3 685 276 296 114 48 chr5 13222537 13222704 -139314555 + MLT1D LTR MaLR 308 485 -20 3 685 426 328 121 65 chr5 13223132 13223347 -139313912 - B4 SINE B4 -18 274 48 3 685 1323 261 69 3 chr5 13223358 13223704 -139313555 - MTD LTR MaLR 0 419 51 3 685 492 313 68 7 chr5 13223991 13224139 -139313120 + B3A SINE B2 1 157 -41 3 685 390 42 0 0 chr5 13224140 13224188 -139313071 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 685 331 259 52 61 chr5 13224307 13224422 -139312837 + RMER12 LTR ERVK 742 855 -467 3 685 617 270 18 30 chr5 13224388 13224552 -139312707 - B3A SINE B2 -14 202 41 3 685 21 57 0 0 chr5 13225190 13225225 -139312034 + AT_rich Low_complexity Low_complexity 1 35 0 3 685 25 31 0 0 chr5 13225283 13225315 -139311944 + AT_rich Low_complexity Low_complexity 1 32 0 3 685 1530 119 20 24 chr5 13226041 13226291 -139310968 + IAPLTR2b LTR ERVK 1 249 -78 3 685 1982 88 40 4 chr5 13226291 13226747 -139310512 - IAPEz-int LTR ERVK -6075 406 9 3 685 2203 118 90 71 chr5 13226748 13227214 -139310045 - IAPLTR2_Mm LTR ERVK 0 475 1 3 685 204 323 0 46 chr5 13227391 13227456 -139309803 - L4 LINE RTE -503 1526 1465 3 685 37 90 0 0 chr5 13227710 13227810 -139309449 + AT_rich Low_complexity Low_complexity 1 100 0 3 685 3057 325 67 12 chr5 13230736 13231934 -139305325 - Lx8 LINE L1 0 7473 6211 3 685 464 0 0 18 chr5 13232004 13232061 -139305198 + (TTA)n Simple_repeat Simple_repeat 2 57 0 3 685 546 298 75 55 chr5 13232260 13232628 -139304631 - L1_Mur3 LINE L1 -482 5398 5023 3 685 267 133 0 0 chr5 13232628 13232673 -139304586 + (CAT)n Simple_repeat Simple_repeat 2 46 0 3 685 546 298 75 55 chr5 13232673 13232741 -139304518 - L1_Mur3 LINE L1 -858 5022 4953 3 685 593 136 0 10 chr5 13232743 13232847 -139304412 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 3 685 867 281 102 59 chr5 13232871 13233563 -139303696 - L1_Mur3 LINE L1 -1202 4944 4187 3 685 366 23 0 0 chr5 13233563 13233606 -139303653 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 685 867 279 103 59 chr5 13233606 13233659 -139303600 - L1_Mur3 LINE L1 -1694 4186 4122 3 685 4501 92 0 9 chr5 13233692 13234329 -139302930 - L1Md_F2 LINE L1 -10 6572 5942 3 685 319 225 0 14 chr5 13234340 13234352 -139302907 + ID SINE ID 72 82 -142 3 685 391 164 0 0 chr5 13234352 13234413 -139302846 + B1_Mur4 SINE Alu 3 63 -87 3 685 213 39 0 0 chr5 13234427 13234453 -139302806 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 685 427 302 167 19 chr5 13234490 13234855 -139302404 - L1_Rod LINE L1 -2868 2979 2561 3 685 633 267 11 22 chr5 13235623 13235807 -139301452 + B3A SINE B2 1 182 -16 3 685 325 93 0 0 chr5 13235807 13235850 -139301409 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 685 659 206 7 0 chr5 13235854 13236009 -139301250 + (TA)n Simple_repeat Simple_repeat 2 157 0 3 685 288 0 0 0 chr5 13236009 13236041 -139301218 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 685 254 345 8 94 chr5 13236045 13236173 -139301086 - Charlie1 DNA MER1_type -2658 123 7 3 685 22 0 0 0 chr5 13236437 13236459 -139300800 + AT_rich Low_complexity Low_complexity 1 22 0 3 685 553 331 47 25 chr5 13236591 13236870 -139300389 - L3 LINE CR1 -2197 2292 2008 3 686 941 249 66 8 chr5 13239035 13239369 -139297890 - Lx7 LINE L1 -1670 5974 5592 3 686 33 25 0 0 chr5 13240507 13240547 -139296712 + AT_rich Low_complexity Low_complexity 1 40 0 3 686 454 371 0 0 chr5 13241036 13241179 -139296080 + B1F SINE Alu 1 143 -6 3 686 26 30 0 0 chr5 13242863 13242896 -139294363 + AT_rich Low_complexity Low_complexity 1 33 0 3 686 15696 84 15 3 chr5 13242956 13246557 -139290702 + L1Md_F2 LINE L1 331 5586 -297 3 686 7143 86 10 2 chr5 13246559 13247545 -139289714 + L1Md_F2 LINE L1 5589 6582 0 3 686 2921 104 7 2 chr5 13248605 13249040 -139288219 + L1_Mus3 LINE L1 6201 6637 -1 3 686 286 23 0 44 chr5 13249063 13249108 -139288151 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 3 686 30 27 0 0 chr5 13250427 13250464 -139286795 + AT_rich Low_complexity Low_complexity 1 37 0 3 686 25 0 0 0 chr5 13250731 13250756 -139286503 + AT_rich Low_complexity Low_complexity 1 25 0 3 686 445 354 12 19 chr5 13250795 13250956 -139286303 - RSINE1 SINE B4 0 165 6 3 686 367 374 105 40 chr5 13250957 13251406 -139285853 - L1ME1 LINE L1 -59 6120 5643 3 686 312 290 54 21 chr5 13251567 13251780 -139285479 - L1ME1 LINE L1 -763 5383 5161 3 686 444 337 65 93 chr5 13252560 13252838 -139284421 - B4 SINE B4 -15 277 8 3 686 1073 79 0 0 chr5 13253669 13253808 -139283451 - B1_Mus1 SINE Alu -9 139 1 3 686 34 72 0 0 chr5 13254670 13254739 -139282520 + AT_rich Low_complexity Low_complexity 1 69 0 3 686 35 41 0 0 chr5 13254880 13254929 -139282330 + AT_rich Low_complexity Low_complexity 1 49 0 3 686 375 23 0 0 chr5 13255967 13256011 -139281248 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 686 387 0 0 0 chr5 13256012 13256055 -139281204 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 686 6866 182 35 96 chr5 13257207 13259236 -139278023 - Lx4B LINE L1 -442 6616 4682 3 686 1310 119 18 0 chr5 13259236 13259455 -139277804 + L1_Mus3 LINE L1 6416 6638 0 3 686 6866 173 26 138 chr5 13259455 13260019 -139277240 - Lx4B LINE L1 -1196 4681 4200 3 686 246 170 0 83 chr5 13260036 13260132 -139277127 - Charlie7 DNA MER1_type -54 2558 2471 3 686 180 0 0 0 chr5 13260147 13260167 -139277092 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 686 283 153 111 0 chr5 13260167 13260239 -139277020 - Lx4B LINE L1 -1683 4194 4115 3 686 1590 192 24 110 chr5 13260234 13260690 -139276569 + Lx4B LINE L1 6615 7031 -27 3 686 294 29 0 0 chr5 13260695 13260730 -139276529 + (TTAA)n Simple_repeat Simple_repeat 1 35 0 3 686 4599 151 20 5 chr5 13260852 13261631 -139275628 - Lx2B LINE L1 -623 6377 5587 3 686 1888 261 79 5 chr5 13261647 13262202 -139275057 + Lx2 LINE L1 6391 6986 -11 3 686 222 285 201 8 chr5 13262770 13262907 -139274352 - MIRb SINE MIR -111 165 4 3 686 48 53 0 0 chr5 13263904 13263980 -139273279 + AT_rich Low_complexity Low_complexity 1 76 0 3 686 1122 90 0 0 chr5 13264175 13264320 -139272939 + B1_Mus2 SINE Alu 1 145 -2 3 686 35 41 0 0 chr5 13264885 13264934 -139272325 + AT_rich Low_complexity Low_complexity 1 49 0 3 686 35 0 0 0 chr5 13265978 13266013 -139271246 + AT_rich Low_complexity Low_complexity 1 35 0 3 686 207 0 0 0 chr5 13266249 13266272 -139270987 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 686 30 0 0 0 chr5 13269070 13269100 -139268159 + AT_rich Low_complexity Low_complexity 1 30 0 3 686 826 293 58 69 chr5 13270084 13270432 -139266827 - ORR1E LTR MaLR -12 347 4 3 686 23 0 0 0 chr5 13271766 13271789 -139265470 + AT_rich Low_complexity Low_complexity 1 23 0 3 686 322 336 24 32 chr5 13271871 13271994 -139265265 + B3A SINE B2 1 122 -76 3 686 243 103 0 0 chr5 13271997 13272036 -139265223 + (CTAA)n Simple_repeat Simple_repeat 1 39 0 3 686 201 94 0 0 chr5 13272036 13272068 -139265191 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 686 894 121 43 0 chr5 13273568 13273708 -139263551 - B1_Mus2 SINE Alu 0 147 2 3 686 469 200 0 122 chr5 13273597 13273728 -139263531 - MT2B LTR ERVL -337 264 150 3 686 277 245 0 109 chr5 13273602 13273758 -139263501 - ORR1E-int LTR MaLR -755 754 616 3 686 315 0 0 0 chr5 13274247 13274282 -139262977 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 686 486 0 0 0 chr5 13275254 13275308 -139261951 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 3 686 21 0 0 0 chr5 13275335 13275356 -139261903 + AT_rich Low_complexity Low_complexity 1 21 0 3 686 3399 134 41 2 chr5 13275431 13276015 -139261244 - Lx2 LINE L1 0 6997 6391 3 686 1255 270 36 16 chr5 13276276 13276634 -139260625 + MTD LTR MaLR 12 388 -12 3 686 245 242 57 64 chr5 13277484 13277625 -139259634 - L1M2 LINE L1 -3886 2257 2118 3 686 439 342 112 40 chr5 13277858 13278312 -139258947 + L1MDa LINE L1 1588 2074 -4559 3 686 678 47 0 0 chr5 13280314 13280400 -139256859 + (TC)n Simple_repeat Simple_repeat 2 87 0 3 686 21 71 0 0 chr5 13281197 13281239 -139256020 + AT_rich Low_complexity Low_complexity 1 42 0 3 686 1411 167 91 6 chr5 13281267 13281598 -139255661 - Lx9 LINE L1 -1 7643 7285 3 686 307 296 0 0 chr5 13282182 13282253 -139255006 - ID4_ SINE ID -10 73 3 3 686 492 62 0 0 chr5 13282406 13282470 -139254789 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 686 742 151 27 0 chr5 13282550 13282696 -139254563 + GA-rich Low_complexity Low_complexity 3 152 0 3 686 454 312 36 14 chr5 13283272 13283552 -139253707 - L1MA6 LINE L1 -54 6246 5961 3 686 1153 62 7 0 chr5 13284374 13284519 -139252740 + B1_Mus1 SINE Alu 2 147 -1 3 686 2802 245 53 80 chr5 13284709 13285646 -139251613 - Lx7 LINE L1 0 7696 6785 3 686 23 0 0 0 chr5 13285777 13285800 -139251459 + AT_rich Low_complexity Low_complexity 1 23 0 3 686 25 0 0 0 chr5 13286016 13286041 -139251218 + AT_rich Low_complexity Low_complexity 1 25 0 3 686 4287 54 0 0 chr5 13286573 13287106 -139250153 - L1Md_F2 LINE L1 -12 6570 6038 3 686 372 255 51 0 chr5 13287288 13287386 -139249873 + PB1D10 SINE Alu 9 111 -6 3 686 28 0 0 0 chr5 13288003 13288031 -139249228 + AT_rich Low_complexity Low_complexity 1 28 0 3 686 213 119 0 0 chr5 13288864 13288906 -139248353 + (T)n Simple_repeat Simple_repeat 1 42 0 3 686 387 0 0 0 chr5 13289021 13289064 -139248195 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 686 202 361 112 24 chr5 13289277 13289402 -139247857 + L2a LINE L2 3033 3168 -258 3 686 611 350 183 26 chr5 13289582 13290051 -139247208 + L2 LINE L2 113 655 -2764 3 686 23 0 0 0 chr5 13290594 13290617 -139246642 + AT_rich Low_complexity Low_complexity 1 23 0 3 686 204 40 0 0 chr5 13290723 13290748 -139246511 + (TAA)n Simple_repeat Simple_repeat 1 25 0 3 686 22 94 0 0 chr5 13290822 13290886 -139246373 + AT_rich Low_complexity Low_complexity 1 64 0 3 686 183 156 0 0 chr5 13291834 13291866 -139245393 + (TTA)n Simple_repeat Simple_repeat 2 33 0 3 686 462 36 0 0 chr5 13292723 13292779 -139244480 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 686 33 43 0 0 chr5 13293475 13293522 -139243737 + AT_rich Low_complexity Low_complexity 1 47 0 4 686 180 135 0 0 chr5 13293589 13293626 -139243633 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 4 686 3039 234 21 63 chr5 13293629 13294397 -139242862 - RMER1B Other Other -9 1057 2 4 686 506 294 39 7 chr5 13294501 13294719 -139242540 + L1MA6 LINE L1 5782 5999 -301 4 686 23 33 0 0 chr5 13294799 13294829 -139242430 + AT_rich Low_complexity Low_complexity 1 30 0 4 686 21 0 0 0 chr5 13295744 13295765 -139241494 + AT_rich Low_complexity Low_complexity 1 21 0 4 686 211 179 0 82 chr5 13296811 13296872 -139240387 + CT-rich Low_complexity Low_complexity 3 58 0 4 686 4046 270 87 17 chr5 13297344 13298517 -139238742 - Lx6 LINE L1 -6 7454 6200 4 686 4326 166 25 37 chr5 13298535 13299371 -139237888 - RMER13A LTR ERVK -34 826 1 4 686 720 262 37 9 chr5 13299371 13299587 -139237672 - Lx6 LINE L1 -1256 6204 5983 4 686 280 373 59 0 chr5 13299953 13300071 -139237188 - MTE2b LTR MaLR -83 296 172 4 686 540 283 43 0 chr5 13300621 13300759 -139236500 - MTE2b LTR MaLR -235 144 1 4 686 351 44 0 0 chr5 13300856 13300901 -139236358 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 686 304 321 54 18 chr5 13300950 13301118 -139236141 - L1M4 LINE L1 -3610 2536 2363 4 686 541 298 63 27 chr5 13301154 13301375 -139235884 - MTD LTR MaLR -7 412 184 4 686 27064 125 11 24 chr5 13302834 13306397 -139230862 - L1_Mus3 LINE L1 0 6638 3145 4 686 183 42 0 0 chr5 13306397 13306421 -139230838 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 686 27064 152 16 28 chr5 13306421 13308982 -139228277 - L1_Mus3 LINE L1 -2739 3144 609 4 686 23 33 0 0 chr5 13311625 13311655 -139225604 + AT_rich Low_complexity Low_complexity 1 30 0 4 686 766 284 26 10 chr5 13311660 13311852 -139225407 - B3 SINE B2 -20 196 2 4 686 207 0 0 0 chr5 13313939 13313962 -139223297 + (A)n Simple_repeat Simple_repeat 1 23 0 4 686 258 32 0 0 chr5 13314752 13314783 -139222476 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 686 342 0 0 0 chr5 13314783 13314820 -139222439 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 686 24 32 0 0 chr5 13315281 13315312 -139221947 + AT_rich Low_complexity Low_complexity 1 31 0 4 686 738 280 9 45 chr5 13315644 13315868 -139221391 + ID_B1 SINE B4 1 216 -8 4 686 544 274 30 30 chr5 13316472 13316604 -139220655 - ID_B1 SINE B4 0 224 93 4 686 343 306 149 52 chr5 13319688 13319936 -139217323 + B4A SINE B4 3 274 -18 4 686 904 288 39 95 chr5 13320243 13320673 -139216586 + MTE2a LTR MaLR 1 417 -2 4 686 201 119 23 23 chr5 13320978 13321021 -139216238 + T-rich Low_complexity Low_complexity 2 44 0 4 686 1190 252 39 10 chr5 13321219 13321527 -139215732 + Lx7 LINE L1 6960 7276 -420 4 686 459 0 0 0 chr5 13321582 13321633 -139215626 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 686 415 240 40 8 chr5 13321746 13321872 -139215387 + Lx7 LINE L1 7567 7696 0 4 686 274 23 23 23 chr5 13321900 13321944 -139215315 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 686 1102 66 0 0 chr5 13321944 13322081 -139215178 - B1_Mus2 SINE Alu -10 137 1 4 686 269 233 22 0 chr5 13322388 13322478 -139214781 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 686 312 27 0 0 chr5 13322483 13322520 -139214739 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 686 492 330 29 44 chr5 13323013 13323219 -139214040 + ID_B1 SINE B4 4 206 -18 4 686 414 0 0 0 chr5 13323244 13323290 -139213969 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 4 686 186 336 29 79 chr5 13323642 13323781 -139213478 - MIR SINE MIR -105 157 26 4 686 426 328 107 0 chr5 13324258 13324389 -139212870 + RSINE1 SINE B4 2 146 -19 4 686 189 0 0 0 chr5 13324406 13324427 -139212832 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 686 433 349 18 9 chr5 13324624 13324841 -139212418 - L1MC4 LINE L1 -1055 6987 6769 4 686 180 0 0 0 chr5 13325779 13325799 -139211460 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 686 1063 70 21 0 chr5 13325814 13325957 -139211302 - B1_Mus2 SINE Alu 0 147 2 4 686 277 24 23 23 chr5 13328096 13328139 -139209120 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 4 686 556 222 7 27 chr5 13330099 13330247 -139207012 - Lx5 LINE L1 -9 7041 6897 4 686 191 125 0 24 chr5 13330638 13330679 -139206580 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 4 686 189 107 0 0 chr5 13330796 13330824 -139206435 + (TAA)n Simple_repeat Simple_repeat 2 29 0 4 686 601 229 15 0 chr5 13332432 13332563 -139204696 + B1_Mur3 SINE Alu 7 139 -10 4 686 294 29 0 0 chr5 13332563 13332598 -139204661 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 686 237 311 0 41 chr5 13332749 13332881 -139204378 + GA-rich Low_complexity Low_complexity 1 126 0 4 686 429 76 0 0 chr5 13333510 13333576 -139203683 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 686 264 269 25 13 chr5 13333872 13333951 -139203308 + CT-rich Low_complexity Low_complexity 4 83 0 4 686 38 22 0 0 chr5 13334120 13334165 -139203094 + AT_rich Low_complexity Low_complexity 1 45 0 4 686 511 252 45 32 chr5 13334880 13335036 -139202223 + L1_Mur3 LINE L1 657 814 -6898 4 686 2176 234 56 68 chr5 13335052 13335174 -139202085 + Lx7 LINE L1 6807 6918 -778 4 686 1113 85 0 0 chr5 13335174 13335315 -139201944 + B1_Mus1 SINE Alu 2 142 -6 4 686 2176 234 56 68 chr5 13335315 13335810 -139201449 + Lx7 LINE L1 6919 7420 -276 4 686 465 99 0 0 chr5 13335810 13335891 -139201368 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 686 2176 234 56 68 chr5 13335891 13335936 -139201323 + Lx7 LINE L1 7421 7461 -235 4 686 206 211 0 50 chr5 13336307 13336367 -139200892 + GA-rich Low_complexity Low_complexity 2 58 0 4 686 22644 62 3 2 chr5 13339203 13342147 -139195112 + L1Md_F2 LINE L1 2640 5586 -297 4 686 7811 53 6 1 chr5 13342148 13343130 -139194129 + L1Md_F2 LINE L1 5588 6574 -8 4 686 667 190 19 52 chr5 13344332 13344487 -139192772 - Lx6 LINE L1 -4 7456 7307 4 686 262 175 333 0 chr5 13344469 13344532 -139192727 + Lx6 LINE L1 7167 7250 -210 4 686 184 355 53 21 chr5 13350276 13350371 -139186888 + MIRc SINE MIR 85 182 -86 4 686 462 79 0 0 chr5 13351360 13351423 -139185836 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 686 203 319 0 0 chr5 13352443 13352512 -139184747 + (TATG)n Simple_repeat Simple_repeat 2 70 0 4 686 229 367 57 33 chr5 13352644 13352804 -139184455 - MIRb SINE MIR -59 209 41 4 686 467 209 0 9 chr5 13352885 13353001 -139184258 + (TA)n Simple_repeat Simple_repeat 2 116 0 4 686 3139 131 10 8 chr5 13353012 13353518 -139183741 - L1_Mus4 LINE L1 -4 6632 6126 4 686 284 211 0 53 chr5 13354164 13354239 -139183020 + GA-rich Low_complexity Low_complexity 3 73 0 4 686 483 145 0 0 chr5 13354853 13354936 -139182323 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 686 1722 219 113 7 chr5 13355396 13355811 -139181448 - RMER15 LTR ERVL -112 463 5 4 686 538 272 9 128 chr5 13356120 13356160 -139181099 + MTEb LTR MaLR 183 220 -159 4 686 1358 260 44 17 chr5 13356160 13356520 -139180739 + ORR1D2 LTR MaLR 1 370 0 4 686 538 272 9 128 chr5 13356520 13356698 -139180561 + MTEb LTR MaLR 221 375 -4 4 686 3055 323 116 29 chr5 13356724 13358128 -139179131 + MTEb-int LTR MaLR 24 1550 -30 4 686 351 324 120 109 chr5 13358117 13358467 -139178792 + MTEb LTR MaLR 13 366 -4 4 686 24 0 0 0 chr5 13358754 13358778 -139178481 + AT_rich Low_complexity Low_complexity 1 24 0 4 686 885 187 175 0 chr5 13359611 13359857 -139177402 - Lx9 LINE L1 -1 7643 7355 4 686 25 31 0 0 chr5 13359932 13359964 -139177295 + AT_rich Low_complexity Low_complexity 1 32 0 4 686 180 0 0 0 chr5 13359977 13359997 -139177262 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 686 190 271 0 79 chr5 13361061 13361137 -139176122 + L3 LINE CR1 2351 2420 -2069 4 686 27 0 0 0 chr5 13361641 13361668 -139175591 + AT_rich Low_complexity Low_complexity 1 27 0 4 686 21 36 0 0 chr5 13361783 13361811 -139175448 + AT_rich Low_complexity Low_complexity 1 28 0 4 686 248 333 0 0 chr5 13361830 13361893 -139175366 - ID_B1 SINE B4 -35 189 127 4 686 450 354 66 106 chr5 13361994 13362297 -139174962 + B4 SINE B4 2 292 0 4 686 299 186 48 29 chr5 13362300 13362405 -139174854 + (CATA)n Simple_repeat Simple_repeat 4 110 0 4 686 549 138 0 0 chr5 13362428 13362522 -139174737 + (CA)n Simple_repeat Simple_repeat 2 95 0 4 686 423 184 0 117 chr5 13363115 13363226 -139174033 + MT2B LTR ERVL 167 264 -337 4 686 834 68 77 0 chr5 13363132 13363249 -139174010 + B1_Mm SINE Alu 19 144 -3 4 686 996 159 0 0 chr5 13363249 13363425 -139173834 + GA-rich Low_complexity Low_complexity 2 177 0 4 686 378 0 0 0 chr5 13363649 13363691 -139173568 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 686 1939 208 67 46 chr5 13364039 13364607 -139172652 + RLTR31A_Mm LTR ERVK 5 584 0 4 686 498 70 0 0 chr5 13364687 13364758 -139172501 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 686 227 183 50 0 chr5 13365439 13365499 -139171760 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 4 686 324 83 0 0 chr5 13365504 13365552 -139171707 + (TATG)n Simple_repeat Simple_repeat 2 49 0 4 686 1082 76 0 0 chr5 13365786 13365931 -139171328 + B1_Mus2 SINE Alu 1 145 -2 4 686 852 10 0 0 chr5 13365931 13366028 -139171231 + (GAGAA)n Simple_repeat Simple_repeat 4 100 0 4 686 504 0 0 0 chr5 13366337 13366393 -139170866 + (GA)n Simple_repeat Simple_repeat 2 57 0 4 686 391 323 62 16 chr5 13366402 13366531 -139170728 + B1F SINE Alu 14 148 -1 4 686 282 179 0 0 chr5 13366533 13366589 -139170670 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 686 457 129 20 10 chr5 13366597 13366699 -139170560 + (CAGAGA)n Simple_repeat Simple_repeat 2 104 0 4 686 3726 11 121 0 chr5 13367044 13367484 -139169775 + MT2_Mm LTR ERVL 1 493 0 4 686 26 50 0 0 chr5 13367724 13367764 -139169495 + AT_rich Low_complexity Low_complexity 1 40 0 4 85 6123 145 30 7 chr5 13368791 13369979 -139167280 + Lx LINE L1 5433 6649 -5 4 687 7714 61 3 15 chr5 13370107 13371103 -139166156 - L1Md_F2 LINE L1 -12 6570 5587 4 687 6486 32 12 9 chr5 13371131 13371929 -139165330 - L1Md_F3 LINE L1 0 6584 5784 4 687 207 0 0 0 chr5 13375937 13375960 -139161299 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 687 897 50 0 0 chr5 13375960 13376078 -139161181 + (TA)n Simple_repeat Simple_repeat 2 120 0 4 687 231 337 32 21 chr5 13376346 13376440 -139160819 - MLT1A1 LTR MaLR 0 408 314 5 687 279 240 102 19 chr5 13376627 13376742 -139160517 - MLT1A1 LTR MaLR -233 132 6 5 687 27 0 0 0 chr5 13378649 13378676 -139158583 + AT_rich Low_complexity Low_complexity 1 27 0 5 687 21 36 0 0 chr5 13380796 13380824 -139156435 + AT_rich Low_complexity Low_complexity 1 28 0 5 687 790 64 9 0 chr5 13381611 13381720 -139155539 + B1_Mm SINE Alu 38 147 0 5 687 189 107 0 0 chr5 13381720 13381748 -139155511 + (A)n Simple_repeat Simple_repeat 1 28 0 5 687 3947 9 0 0 chr5 13382268 13382712 -139154547 - L1Md_A LINE L1 -514 6068 5625 5 687 1710 37 0 14 chr5 13382712 13382930 -139154329 + L1Md_A LINE L1 6368 6582 0 5 687 679 331 130 11 chr5 13383305 13383683 -139153576 - L4 LINE RTE -99 1930 1508 5 687 647 169 87 24 chr5 13385495 13385622 -139151637 + B1_Mus2 SINE Alu 12 146 -1 5 687 180 286 125 73 chr5 13385816 13385952 -139151307 - MIR3 SINE MIR -6 202 60 5 687 21 57 0 0 chr5 13386233 13386268 -139150991 + AT_rich Low_complexity Low_complexity 1 35 0 5 687 21 0 0 0 chr5 13387037 13387058 -139150201 + AT_rich Low_complexity Low_complexity 1 21 0 5 687 417 261 31 41 chr5 13387129 13387281 -139149978 + ORR1D2 LTR MaLR 1 141 -218 5 687 936 313 34 0 chr5 13387300 13387565 -139149694 + ORR1D2 LTR MaLR 89 362 -8 5 687 3598 190 63 60 chr5 13390677 13391444 -139145815 + RMER13A LTR ERVK 1 769 -91 5 687 974 149 34 22 chr5 13391713 13391891 -139145368 + B2_Mm2 SINE B2 3 182 -13 5 687 321 242 65 26 chr5 13391907 13392060 -139145199 - L1MA8 LINE L1 -64 6227 6069 5 687 1831 222 152 25 chr5 13392116 13392600 -139144659 + Lx7 LINE L1 6873 7419 -277 5 687 246 32 0 0 chr5 13392600 13392631 -139144628 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 687 1831 222 152 25 chr5 13392631 13392705 -139144554 + Lx7 LINE L1 7420 7501 -195 5 687 189 74 0 0 chr5 13393297 13393324 -139143935 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5 687 321 135 0 0 chr5 13393440 13393492 -139143767 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 687 309 51 0 0 chr5 13394285 13394324 -139142935 + (TGGGGG)n Simple_repeat Simple_repeat 3 41 0 5 687 186 43 0 0 chr5 13394700 13394723 -139142536 + (TTC)n Simple_repeat Simple_repeat 2 24 0 5 687 588 142 51 0 chr5 13395759 13396023 -139141236 + (TG)n Simple_repeat Simple_repeat 1 277 0 5 687 450 213 69 30 chr5 13396094 13396225 -139141034 - B4A SINE B4 -19 273 138 5 687 582 15 0 0 chr5 13397135 13397202 -139140057 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 687 304 262 0 56 chr5 13397203 13397292 -139139967 - HAL1-3A_ME LINE L1 -503 2355 2272 5 687 654 104 0 0 chr5 13398992 13399088 -139138171 + (CA)n Simple_repeat Simple_repeat 2 97 0 5 687 220 216 20 0 chr5 13399457 13399508 -139137751 + CT-rich Low_complexity Low_complexity 2 53 0 5 687 186 43 0 0 chr5 13399630 13399653 -139137606 + (TTC)n Simple_repeat Simple_repeat 2 24 0 5 687 369 145 0 0 chr5 13399695 13399757 -139137502 + (T)n Simple_repeat Simple_repeat 1 62 0 5 687 321 26 0 0 chr5 13400836 13400874 -139136385 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 687 453 19 0 0 chr5 13400964 13401018 -139136241 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 687 22 0 0 0 chr5 13401825 13401847 -139135412 + AT_rich Low_complexity Low_complexity 1 22 0 5 687 23 0 0 0 chr5 13403651 13403674 -139133585 + AT_rich Low_complexity Low_complexity 1 23 0 5 687 264 122 0 0 chr5 13403784 13403825 -139133434 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 687 1028 201 9 49 chr5 13403827 13404052 -139133207 + URR1A DNA MER1_type 10 225 -1 5 687 489 34 0 0 chr5 13404086 13404145 -139133114 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 687 832 266 70 113 chr5 13406932 13407332 -139129927 + MTE2a LTR MaLR 6 374 -5 5 687 243 222 19 0 chr5 13407574 13407628 -139129631 + GA-rich Low_complexity Low_complexity 3 57 0 5 687 23 0 0 0 chr5 13407751 13407774 -139129485 + AT_rich Low_complexity Low_complexity 1 23 0 5 687 691 130 0 88 chr5 13408494 13408654 -139128605 - Lx3A LINE L1 -7 6974 6829 5 687 684 107 0 0 chr5 13410369 13410472 -139126787 + (GAAA)n Simple_repeat Simple_repeat 3 105 0 5 687 923 93 14 0 chr5 13410494 13410633 -139126626 + (GGAAA)n Simple_repeat Simple_repeat 4 144 0 5 687 872 27 9 0 chr5 13412784 13412895 -139124364 + (CA)n Simple_repeat Simple_repeat 2 113 0 5 687 188 34 0 33 chr5 13413012 13413042 -139124217 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 687 1091 72 0 0 chr5 13413042 13413180 -139124079 - B1_Mus1 SINE Alu -10 138 1 5 687 221 179 23 23 chr5 13413384 13413470 -139123789 + (TA)n Simple_repeat Simple_repeat 1 86 0 5 687 1045 65 0 13 chr5 13413665 13413822 -139123437 + (TG)n Simple_repeat Simple_repeat 2 156 0 5 687 276 133 0 0 chr5 13413913 13413973 -139123286 + (T)n Simple_repeat Simple_repeat 1 60 0 5 687 197 83 28 0 chr5 13417366 13417402 -139119857 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 687 808 255 55 5 chr5 13418234 13418435 -139118824 + B3 SINE B2 1 211 -5 5 687 596 288 90 33 chr5 13419210 13419540 -139117719 - MTEb LTR MaLR -6 353 1 5 687 514 114 22 11 chr5 13419582 13419671 -139117588 - B1_Mur4 SINE Alu -20 130 41 5 687 383 293 53 7 chr5 13420234 13420385 -139116874 + MER58B DNA MER1_type 29 186 -155 5 687 414 0 0 0 chr5 13420427 13420473 -139116786 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 687 342 0 0 0 chr5 13420891 13420929 -139116330 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 687 296 295 103 21 chr5 13420987 13421084 -139116175 + ID_B1 SINE B4 110 214 -10 5 687 298 253 0 0 chr5 13422807 13422882 -139114377 + (CA)n Simple_repeat Simple_repeat 1 75 0 5 687 1262 238 61 13 chr5 13422897 13423208 -139114051 + ORR1D1 LTR MaLR 14 339 -35 5 687 418 308 41 41 chr5 13423229 13423351 -139113908 - B1F1 SINE Alu -15 134 13 5 687 300 27 0 0 chr5 13424195 13424232 -139113027 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 687 466 268 65 61 chr5 13424623 13424885 -139112374 + L1M2 LINE L1 4514 4776 -1367 5 687 1955 308 60 65 chr5 13424900 13425959 -139111300 - Lx8 LINE L1 -7 7466 6414 5 687 207 0 0 0 chr5 13425959 13425982 -139111277 + (A)n Simple_repeat Simple_repeat 1 23 0 5 687 276 246 16 0 chr5 13426020 13426081 -139111178 - B1_Mur3 SINE Alu -84 65 4 5 687 261 260 0 76 chr5 13426081 13426094 -139111165 - MT2B LTR ERVL -374 222 155 5 687 2731 206 44 26 chr5 13426090 13426699 -139110560 - ORR1B1-int LTR MaLR -889 620 1 5 687 2041 190 10 3 chr5 13426699 13427090 -139110169 - ORR1B1 LTR MaLR 0 394 1 5 687 251 28 0 27 chr5 13427337 13427374 -139109885 + (TAA)n Simple_repeat Simple_repeat 2 37 0 5 687 216 0 0 0 chr5 13427471 13427495 -139109764 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 687 1089 52 0 0 chr5 13427495 13427629 -139109630 - B1_Mus1 SINE Alu -10 138 5 5 687 24 32 0 0 chr5 13428698 13428729 -139108530 + AT_rich Low_complexity Low_complexity 1 31 0 5 687 768 68 16 25 chr5 13429924 13430045 -139107214 + L1_Mus2 LINE L1 6447 6566 0 5 687 273 73 55 0 chr5 13432283 13432338 -139104921 + Lx3_Mus LINE L1 6952 7009 0 5 687 199 161 0 35 chr5 13434415 13434473 -139102786 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 687 213 226 0 0 chr5 13434588 13434641 -139102618 + T-rich Low_complexity Low_complexity 1 53 0 5 687 591 119 0 0 chr5 13434750 13434834 -139102425 + BC1_Mm scRNA scRNA 1 84 -68 5 687 187 51 49 49 chr5 13435558 13435599 -139101660 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 5 687 1043 92 0 0 chr5 13435728 13435869 -139101390 + B1_Mus2 SINE Alu 5 145 -2 5 687 503 261 27 88 chr5 13436986 13437133 -139100126 + RSINE1 SINE B4 28 165 0 5 687 297 0 0 0 chr5 13437895 13437928 -139099331 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 687 294 262 154 27 chr5 13437966 13438076 -139099183 - B3A SINE B2 -70 125 2 5 687 21 71 0 0 chr5 13438865 13438907 -139098352 + AT_rich Low_complexity Low_complexity 1 42 0 5 687 458 207 23 0 chr5 13440536 13440613 -139096646 + B1_Mur4 SINE Alu 42 120 -30 5 687 486 33 0 0 chr5 13440613 13440673 -139096586 + (CAAAA)n Simple_repeat Simple_repeat 5 64 0 5 687 375 127 0 0 chr5 13440988 13441051 -139096208 + (TCC)n Simple_repeat Simple_repeat 2 64 0 5 687 194 390 111 37 chr5 13442096 13442527 -139094732 - L2 LINE L2 -672 2747 2285 5 687 217 352 105 70 chr5 13442682 13442853 -139094406 + MIRb SINE MIR 4 180 -88 5 687 198 0 0 0 chr5 13443105 13443127 -139094132 + (TTAG)n Simple_repeat Simple_repeat 3 24 0 5 687 284 258 45 0 chr5 13443327 13443393 -139093866 + B1_Mur4 SINE Alu 31 99 -51 5 687 243 146 0 0 chr5 13443401 13443442 -139093817 + (TAA)n Simple_repeat Simple_repeat 3 43 0 5 687 222 143 0 45 chr5 13444519 13444563 -139092696 + GA-rich Low_complexity Low_complexity 3 44 0 5 687 270 0 0 0 chr5 13445037 13445067 -139092192 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 5 687 1112 58 0 0 chr5 13445069 13445206 -139092053 - B1_Mus2 SINE Alu -10 137 1 5 687 6833 34 5 4 chr5 13445838 13446657 -139090602 - L1Md_F2 LINE L1 -7 6575 5756 5 687 448 73 0 0 chr5 13446661 13446729 -139090530 + MusHAL1 LINE L1 196 263 -2449 5 687 3533 193 38 15 chr5 13448097 13448829 -139088430 - Lx2B LINE L1 -1 6999 6251 5 687 189 0 0 0 chr5 13448829 13448850 -139088409 + (T)n Simple_repeat Simple_repeat 1 21 0 5 687 870 189 0 0 chr5 13449273 13449416 -139087843 - B1_Mus1 SINE Alu 0 148 6 5 687 245 290 75 0 chr5 13451699 13451792 -139085467 + Cheshire DNA MER1_type 167 266 -2154 5 687 5740 135 44 8 chr5 13452616 13453555 -139083704 - Lx2A LINE L1 -1 7007 6035 6 687 437 34 17 0 chr5 13453729 13453788 -139083471 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 6 687 668 306 109 17 chr5 13453947 13454186 -139083073 + B4A SINE B4 28 288 -4 6 687 21 0 0 0 chr5 13454427 13454448 -139082811 + AT_rich Low_complexity Low_complexity 1 21 0 6 687 235 303 0 10 chr5 13455944 13456044 -139081215 + T-rich Low_complexity Low_complexity 1 99 0 6 687 505 314 136 24 chr5 13456717 13457047 -139080212 - MER31B LTR ERV1 -91 375 9 6 687 6659 119 35 13 chr5 13457193 13457318 -139079941 - Lx LINE L1 -3 6651 6535 6 687 252 0 0 0 chr5 13457318 13457346 -139079913 + (CCCA)n Simple_repeat Simple_repeat 2 29 0 6 687 6659 124 31 12 chr5 13457346 13458371 -139078888 - Lx LINE L1 -120 6534 5478 6 687 657 266 58 16 chr5 13458433 13458624 -139078635 + B4A SINE B4 74 272 -20 6 687 412 248 13 0 chr5 13459247 13459396 -139077863 + CT-rich Low_complexity Low_complexity 2 152 0 6 687 21 36 0 0 chr5 13459808 13459836 -139077423 + AT_rich Low_complexity Low_complexity 1 28 0 6 687 245 109 22 0 chr5 13460950 13460996 -139076263 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 687 522 0 0 0 chr5 13460996 13461054 -139076205 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 687 21 0 0 0 chr5 13461906 13461927 -139075332 + AT_rich Low_complexity Low_complexity 1 21 0 6 687 180 0 0 0 chr5 13462169 13462189 -139075070 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 6 687 1114 88 0 0 chr5 13462191 13462339 -139074920 - B1_Mus1 SINE Alu 0 148 1 6 687 24 0 0 0 chr5 13462518 13462542 -139074717 + AT_rich Low_complexity Low_complexity 1 24 0 6 687 437 312 91 5 chr5 13462549 13462758 -139074501 + LTR40b LTR ERVL 207 433 -29 6 687 350 350 90 7 chr5 13463164 13463308 -139073951 - B4A SINE B4 -5 287 132 6 687 413 337 147 16 chr5 13463312 13463502 -139073757 - B4A SINE B4 -46 246 32 6 687 21 0 0 0 chr5 13464424 13464445 -139072814 + AT_rich Low_complexity Low_complexity 1 21 0 6 687 6674 74 19 1 chr5 13464445 13465336 -139071923 - L1_Mus3 LINE L1 -1 6637 5731 6 687 223 183 33 16 chr5 13465370 13465431 -139071828 + (TA)n Simple_repeat Simple_repeat 1 62 0 6 687 24 32 0 0 chr5 13465466 13465497 -139071762 + AT_rich Low_complexity Low_complexity 1 31 0 6 687 253 209 27 95 chr5 13466126 13466200 -139071059 - MLT2E LTR ERVL -553 75 7 6 687 546 266 14 0 chr5 13466597 13466740 -139070519 + B1_Mur4 SINE Alu 4 148 -2 6 687 372 252 193 0 chr5 13467030 13467149 -139070110 - B1_Mur4 SINE Alu 0 150 9 6 687 416 341 55 57 chr5 13467594 13467961 -139069298 - MLT1B LTR MaLR -19 371 6 6 687 526 288 0 0 chr5 13468054 13468179 -139069080 + B1_Mur1 SINE Alu 3 127 -22 6 687 180 97 0 0 chr5 13468276 13468307 -139068952 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 687 531 43 0 0 chr5 13468307 13468376 -139068883 + (GA)n Simple_repeat Simple_repeat 2 71 0 6 687 1686 206 110 8 chr5 13472816 13473198 -139064061 - MTC LTR MaLR 0 421 1 6 687 1283 82 5 5 chr5 13475117 13475302 -139061957 - L1_Mus1 LINE L1 -6 6561 6377 6 687 2605 80 0 3 chr5 13475302 13475641 -139061618 + L1Md_F2 LINE L1 6040 6377 -205 6 687 356 192 32 48 chr5 13476953 13477079 -139060180 - Lx9 LINE L1 0 7644 7521 6 687 2754 57 3 44 chr5 13478545 13478930 -139058329 - L1_Mus2 LINE L1 0 6566 6198 6 687 1207 217 174 0 chr5 13478955 13479277 -139057982 - ORR1C1 LTR MaLR 0 378 1 6 687 21 0 0 0 chr5 13479616 13479637 -139057622 + AT_rich Low_complexity Low_complexity 1 21 0 6 687 237 33 0 0 chr5 13479925 13479955 -139057304 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 687 430 251 94 50 chr5 13480259 13480580 -139056679 - Lx9 LINE L1 0 7644 7256 6 687 1197 281 78 84 chr5 13480580 13481271 -139055988 + RMER6C LTR ERVK 1 687 -3 6 687 417 214 9 46 chr5 13481271 13481379 -139055880 - Lx3A LINE L1 -42 6939 6836 6 687 28 0 0 0 chr5 13481391 13481419 -139055840 + AT_rich Low_complexity Low_complexity 1 28 0 6 687 720 285 57 34 chr5 13481427 13481779 -139055480 - Lx9 LINE L1 -383 7261 6902 6 687 270 235 88 0 chr5 13481784 13481886 -139055373 - MER33 DNA MER1_type -32 292 182 6 687 273 162 26 26 chr5 13481919 13481995 -139055264 - L1_Mus3 LINE L1 0 6638 6563 6 687 456 58 32 0 chr5 13481965 13482042 -139055217 - Lx LINE L1 -605 6031 5945 6 687 1719 189 92 88 chr5 13482564 13483063 -139054196 - RLTR20B3 LTR ERVK -56 521 21 6 687 40 0 0 0 chr5 13483069 13483109 -139054150 + AT_rich Low_complexity Low_complexity 1 40 0 6 687 186 295 107 62 chr5 13484483 13484595 -139052664 - MIRb SINE MIR -74 194 78 6 687 23 0 0 0 chr5 13485513 13485536 -139051723 + AT_rich Low_complexity Low_complexity 1 23 0 6 687 333 242 0 0 chr5 13486810 13486872 -139050387 + ID4_ SINE ID 5 66 -17 6 687 542 278 71 0 chr5 13486919 13487088 -139050171 + B3A SINE B2 3 183 -15 6 687 37 69 0 0 chr5 13488043 13488115 -139049144 + AT_rich Low_complexity Low_complexity 1 72 0 6 687 240 232 18 18 chr5 13489871 13489928 -139047331 + GA-rich Low_complexity Low_complexity 4 60 0 6 687 384 22 0 0 chr5 13491140 13491185 -139046074 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 687 288 0 0 0 chr5 13491185 13491216 -139046043 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 687 2249 55 0 3 chr5 13492329 13492638 -139044621 + MusHAL1 LINE L1 79 386 -2326 6 687 1430 216 43 87 chr5 13493422 13493838 -139043421 - RMER10B LTR ERVL 0 398 1 6 687 1027 131 102 0 chr5 13493901 13494077 -139043182 + B2_Mm2 SINE B2 2 195 0 6 687 619 214 110 22 chr5 13494829 13495011 -139042248 + B3 SINE B2 1 190 -5 6 687 231 342 76 0 chr5 13496103 13496261 -139040998 - L2 LINE L2 -428 2991 2822 6 687 910 221 29 24 chr5 13496633 13496842 -139040417 + B3 SINE B2 7 216 0 6 687 1677 65 13 17 chr5 13497116 13497350 -139039909 - ORR1A1 LTR MaLR 0 346 114 6 687 2240 236 60 75 chr5 13497258 13498009 -139039250 - RMER13B LTR ERVK -164 744 5 6 687 23 54 0 0 chr5 13498186 13498223 -139039036 + AT_rich Low_complexity Low_complexity 1 37 0 6 687 1009 164 0 6 chr5 13498920 13499092 -139038167 + RMER6C LTR ERVK 520 690 0 6 687 343 336 20 27 chr5 13499102 13499252 -139038007 - Lx7 LINE L1 -526 7170 7022 6 688 26 0 0 0 chr5 13500446 13500472 -139036787 + AT_rich Low_complexity Low_complexity 1 26 0 1 688 21 36 0 0 chr5 13500599 13500627 -139036632 + AT_rich Low_complexity Low_complexity 1 28 0 2 688 714 296 0 24 chr5 13500991 13501202 -139036057 + B3 SINE B2 1 206 -10 3 688 231 36 0 0 chr5 13501790 13501818 -139035441 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4 688 692 85 0 186 chr5 13501819 13501964 -139035295 - B1_Mur4 SINE Alu -8 142 25 5 688 527 78 13 0 chr5 13503619 13503696 -139033563 + (TA)n Simple_repeat Simple_repeat 1 78 0 6 688 243 0 0 0 chr5 13504019 13504046 -139033213 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 7 688 230 263 0 123 chr5 13504072 13504137 -139033122 - B1F SINE Alu -92 57 1 8 688 31 26 0 0 chr5 13505516 13505554 -139031705 + AT_rich Low_complexity Low_complexity 1 38 0 9 688 531 278 60 0 chr5 13506872 13507005 -139030254 + B1_Mur1 SINE Alu 2 142 -7 1 688 210 37 0 0 chr5 13507622 13507649 -139029610 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1 688 231 36 0 0 chr5 13507957 13507985 -139029274 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 688 260 303 67 22 chr5 13508418 13508553 -139028706 + MER3 DNA MER1_type 66 206 -3 1 688 407 323 56 56 chr5 13509840 13510037 -139027222 - B3A SINE B2 0 198 2 1 688 354 156 0 0 chr5 13510203 13510267 -139026992 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 688 2807 292 77 54 chr5 13510289 13512220 -139025039 - Lx7 LINE L1 -396 7300 5323 1 688 3097 162 50 25 chr5 13512220 13512817 -139024442 - Lx3C LINE L1 -3 6973 6362 1 688 1622 250 100 33 chr5 13512817 13512952 -139024307 - Lx7 LINE L1 -558 5322 5190 1 688 302 251 82 0 chr5 13513548 13513679 -139023580 - MIRc SINE MIR -97 171 22 1 688 293 131 86 14 chr5 13516588 13516658 -139020601 - B2_Mm2 SINE B2 -1 194 120 1 688 1158 96 6 6 chr5 13517016 13517195 -139020064 - Lx2A1 LINE L1 -3 7005 6827 2 688 547 215 36 48 chr5 13518580 13518746 -139018513 - RSINE1 SINE B4 -1 164 1 2 688 21 57 0 0 chr5 13518878 13518913 -139018346 + AT_rich Low_complexity Low_complexity 1 35 0 2 688 187 325 0 88 chr5 13519856 13519947 -139017312 + MIRb SINE MIR 98 180 -88 2 688 219 125 0 0 chr5 13521017 13521057 -139016202 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 688 205 306 124 75 chr5 13521459 13521685 -139015574 + MIRb SINE MIR 29 265 -3 2 688 202 87 43 0 chr5 13522008 13522054 -139015205 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2 688 1168 42 7 0 chr5 13522056 13522198 -139015061 - B1_Mus2 SINE Alu 0 147 5 2 688 471 345 42 42 chr5 13522222 13522434 -139014825 + B4A SINE B4 66 277 -15 2 688 237 83 0 0 chr5 13522473 13522509 -139014750 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 688 23 92 0 0 chr5 13522520 13522585 -139014674 + AT_rich Low_complexity Low_complexity 1 65 0 3 688 180 97 0 0 chr5 13523555 13523586 -139013673 + (T)n Simple_repeat Simple_repeat 1 31 0 3 688 189 0 0 0 chr5 13523914 13523935 -139013324 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 688 180 0 0 0 chr5 13523935 13523955 -139013304 + (TTA)n Simple_repeat Simple_repeat 3 22 0 3 688 22 35 0 0 chr5 13524442 13524471 -139012788 + AT_rich Low_complexity Low_complexity 1 29 0 3 688 375 297 30 83 chr5 13524488 13524657 -139012602 - RSINE1 SINE B4 -2 163 4 3 688 1005 46 0 0 chr5 13525200 13525331 -139011928 + (GA)n Simple_repeat Simple_repeat 2 132 0 3 688 324 0 0 0 chr5 13525651 13525687 -139011572 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 688 219 69 0 0 chr5 13525966 13525995 -139011264 + (A)n Simple_repeat Simple_repeat 1 29 0 3 688 21 0 0 0 chr5 13526407 13526428 -139010831 + AT_rich Low_complexity Low_complexity 1 21 0 3 688 203 61 30 0 chr5 13527890 13527923 -139009336 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 4 688 487 299 34 34 chr5 13527972 13528180 -139009079 - Lx9 LINE L1 -324 7320 7113 4 688 242 183 45 68 chr5 13528237 13528325 -139008934 + Lx9 LINE L1 7420 7505 -139 4 688 21 36 0 0 chr5 13529048 13529076 -139008183 + AT_rich Low_complexity Low_complexity 1 28 0 4 688 4957 7 0 0 chr5 13529955 13530506 -139006753 - L1Md_T LINE L1 0 6582 6032 4 688 21 0 0 0 chr5 13530588 13530609 -139006650 + AT_rich Low_complexity Low_complexity 1 21 0 4 688 258 32 0 0 chr5 13532165 13532196 -139005063 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 688 4425 99 31 27 chr5 13532306 13532978 -139004281 - Lx LINE L1 0 6654 5980 4 688 341 317 9 46 chr5 13533978 13534087 -139003172 + B1_Mur1 SINE Alu 2 106 -43 4 688 288 70 0 0 chr5 13534087 13534130 -139003129 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 688 252 122 0 0 chr5 13534190 13534231 -139003028 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 5 688 229 281 0 118 chr5 13534814 13534907 -139002352 - BC1_Mm scRNA scRNA -64 88 7 5 688 3544 10 2 0 chr5 13536490 13536885 -139000374 - MTA_Mm LTR MaLR 0 396 1 5 688 9053 36 5 1 chr5 13536885 13537979 -138999280 - MTA_Mm-int LTR MaLR 0 1098 1 5 688 3544 10 2 0 chr5 13537979 13538374 -138998885 - MTA_Mm LTR MaLR 0 396 1 5 688 28 0 0 0 chr5 13539275 13539303 -138997956 + AT_rich Low_complexity Low_complexity 1 28 0 5 688 1037 141 56 6 chr5 13539836 13540014 -138997245 + B2_Mm2 SINE B2 2 188 -7 5 688 36 40 0 0 chr5 13540091 13540141 -138997118 + AT_rich Low_complexity Low_complexity 1 50 0 5 688 291 28 0 0 chr5 13540173 13540209 -138997050 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 5 688 647 227 7 34 chr5 13540214 13540360 -138996899 - B1_Mur3 SINE Alu -7 142 1 5 688 23 0 0 0 chr5 13541119 13541142 -138996117 + AT_rich Low_complexity Low_complexity 1 23 0 5 688 24 67 0 0 chr5 13541165 13541210 -138996049 + AT_rich Low_complexity Low_complexity 1 45 0 5 688 22 56 0 0 chr5 13541423 13541459 -138995800 + AT_rich Low_complexity Low_complexity 1 36 0 6 688 22 70 0 0 chr5 13542747 13542790 -138994469 + AT_rich Low_complexity Low_complexity 1 43 0 6 688 1248 34 0 0 chr5 13542827 13542974 -138994285 - B1_Mm SINE Alu 0 147 1 6 688 180 0 0 0 chr5 13543084 13543104 -138994155 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 6 688 28 29 0 0 chr5 13543554 13543589 -138993670 + AT_rich Low_complexity Low_complexity 1 35 0 6 688 1746 70 4 0 chr5 13544232 13544462 -138992797 + L1_Mus2 LINE L1 5871 6101 -465 6 688 1202 63 11 6 chr5 13545134 13545309 -138991950 - L1_Mus3 LINE L1 -2 6636 6461 6 688 5188 51 5 1 chr5 13546089 13546737 -138990522 - L1_Mus3 LINE L1 -5 6633 5984 6 688 393 304 96 0 chr5 13548311 13548436 -138988823 - B1F SINE Alu -12 137 1 6 688 210 37 0 0 chr5 13550015 13550042 -138987217 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 688 314 279 12 12 chr5 13550615 13550695 -138986564 + 4.5SRNA scRNA scRNA 2 81 -13 7 688 238 349 97 58 chr5 13550705 13550860 -138986399 + RSINE1 SINE B4 3 163 -2 7 688 1854 170 107 0 chr5 13551133 13551480 -138985779 - ORR1C2 LTR MaLR 0 384 1 7 688 798 107 21 7 chr5 13552724 13552865 -138984394 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 7 688 1683 60 5 0 chr5 13553174 13553392 -138983867 - L1_Mus1 LINE L1 -2 6565 6347 7 688 233 311 165 0 chr5 13553545 13553648 -138983611 - ORR1E LTR MaLR 0 379 260 7 688 643 346 6 0 chr5 13553693 13553875 -138983384 - ORR1E LTR MaLR -175 184 2 7 688 417 39 0 0 chr5 13553964 13554015 -138983244 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 688 387 0 0 0 chr5 13557153 13557196 -138980063 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 688 589 275 22 0 chr5 13557486 13557624 -138979635 + RSINE1 SINE B4 3 143 -22 7 688 9742 60 12 2 chr5 13558224 13559480 -138977779 + L1Md_F2 LINE L1 4317 5585 -298 7 688 7349 67 10 6 chr5 13559481 13560461 -138976798 + L1Md_F2 LINE L1 5587 6570 -12 7 688 663 25 0 0 chr5 13561472 13561553 -138975706 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 8 688 568 0 28 0 chr5 13562121 13562193 -138975066 + (GTTTG)n Simple_repeat Simple_repeat 2 75 0 8 688 526 348 27 14 chr5 13562560 13562864 -138974395 - MTD LTR MaLR -55 364 22 8 688 24 0 0 0 chr5 13564187 13564211 -138973048 + AT_rich Low_complexity Low_complexity 1 24 0 8 688 593 271 30 91 chr5 13564349 13564548 -138972711 - B3 SINE B2 -2 214 28 8 688 4125 49 2 2 chr5 13566108 13566620 -138970639 - L1Md_F2 LINE L1 0 6582 6071 8 688 1578 273 109 16 chr5 13566649 13567184 -138970075 + Lx6 LINE L1 6487 7452 -8 8 688 231 275 154 80 chr5 13569723 13569885 -138967374 + B4A SINE B4 1 174 -118 8 688 217 382 0 0 chr5 13569937 13570005 -138967254 + RSINE1 SINE B4 85 152 -13 8 688 22 0 0 0 chr5 13570421 13570443 -138966816 + AT_rich Low_complexity Low_complexity 1 22 0 8 688 3015 161 57 10 chr5 13570573 13571150 -138966109 - RMER6C LTR ERVK -39 651 48 9 688 555 250 7 59 chr5 13571171 13571307 -138965952 - ID_B1 SINE B4 -2 222 94 9 688 21 0 0 0 chr5 13571327 13571348 -138965911 + AT_rich Low_complexity Low_complexity 1 21 0 9 688 24 32 0 0 chr5 13571964 13571995 -138965264 + AT_rich Low_complexity Low_complexity 1 31 0 9 688 240 122 26 51 chr5 13572139 13572217 -138965042 + (CAGAGA)n Simple_repeat Simple_repeat 3 78 0 9 688 3698 21 2 0 chr5 13574473 13574909 -138962350 + L1Md_T LINE L1 6146 6582 0 9 688 309 51 0 0 chr5 13575523 13575562 -138961697 + (A)n Simple_repeat Simple_repeat 1 39 0 9 688 495 109 91 0 chr5 13575564 13575674 -138961585 - L1Md_F3 LINE L1 0 6584 6465 9 688 6446 70 1 0 chr5 13575674 13576530 -138960729 + L1_Mm LINE L1 2403 3259 -2624 9 688 23 33 0 0 chr5 13577969 13577999 -138959260 + AT_rich Low_complexity Low_complexity 1 30 0 9 688 1011 111 27 32 chr5 13578068 13578255 -138959004 + L1_Mus4 LINE L1 6448 6633 -3 1 688 22 0 0 0 chr5 13579133 13579155 -138958104 + AT_rich Low_complexity Low_complexity 1 22 0 1 688 309 288 75 0 chr5 13579784 13579895 -138957364 + PB1D10 SINE Alu 1 116 -33 1 688 378 139 0 0 chr5 13580236 13580308 -138956951 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 688 29 28 0 0 chr5 13580309 13580345 -138956914 + AT_rich Low_complexity Low_complexity 1 36 0 1 688 25 0 0 0 chr5 13580471 13580496 -138956763 + AT_rich Low_complexity Low_complexity 1 25 0 1 688 255 350 106 7 chr5 13580573 13580714 -138956545 - RSINE1 SINE B4 -6 159 5 1 688 339 25 0 0 chr5 13580902 13580942 -138956317 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 688 648 59 0 0 chr5 13581433 13581518 -138955741 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 688 459 319 67 94 chr5 13581619 13581847 -138955412 + B4A SINE B4 1 218 -74 1 688 252 86 0 0 chr5 13581847 13581882 -138955377 + (ATG)n Simple_repeat Simple_repeat 2 36 0 1 688 459 319 67 94 chr5 13581882 13581951 -138955308 + B4A SINE B4 219 290 -2 1 688 277 43 43 0 chr5 13581969 13582016 -138955243 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 688 24 67 0 0 chr5 13582120 13582165 -138955094 + AT_rich Low_complexity Low_complexity 1 45 0 1 688 495 0 0 0 chr5 13582413 13582468 -138954791 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 688 654 280 25 41 chr5 13582760 13582957 -138954302 + B3A SINE B2 1 194 -4 1 688 507 123 0 0 chr5 13582959 13583040 -138954219 + (GGAA)n Simple_repeat Simple_repeat 2 82 0 1 688 191 178 107 27 chr5 13583792 13583867 -138953392 + L3 LINE CR1 2093 2173 -2316 1 688 23 54 0 0 chr5 13585399 13585436 -138951823 + AT_rich Low_complexity Low_complexity 1 37 0 1 688 546 322 57 57 chr5 13586676 13586906 -138950353 + B4 SINE B4 58 287 -5 1 688 183 80 0 0 chr5 13589547 13589572 -138947687 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 688 1412 113 25 4 chr5 13589737 13589976 -138947283 - L1_Mus3 LINE L1 0 6638 6395 1 688 21 36 0 0 chr5 13590543 13590571 -138946688 + AT_rich Low_complexity Low_complexity 1 28 0 1 688 23 0 0 0 chr5 13591603 13591626 -138945633 + AT_rich Low_complexity Low_complexity 1 23 0 1 688 25 0 0 0 chr5 13593050 13593075 -138944184 + AT_rich Low_complexity Low_complexity 1 25 0 1 688 356 337 0 11 chr5 13593268 13593361 -138943898 + PB1D10 SINE Alu 4 95 -22 1 688 180 0 0 0 chr5 13595171 13595191 -138942068 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 688 406 316 98 0 chr5 13595240 13595373 -138941886 - B3 SINE B2 0 216 71 1 688 341 299 131 0 chr5 13595364 13595501 -138941758 - B3A SINE B2 -42 156 2 1 688 201 329 13 0 chr5 13596082 13596158 -138941101 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 1 688 27 29 0 0 chr5 13596610 13596644 -138940615 + AT_rich Low_complexity Low_complexity 1 34 0 1 688 22 35 0 0 chr5 13598292 13598321 -138938938 + AT_rich Low_complexity Low_complexity 1 29 0 1 688 240 111 0 0 chr5 13598820 13598856 -138938403 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 688 259 382 36 0 chr5 13603455 13603565 -138933694 + PB1D10 SINE Alu 3 116 -1 1 688 423 244 112 16 chr5 13603920 13604045 -138933214 - ID_B1 SINE B4 -1 223 87 1 688 194 0 39 0 chr5 13604410 13604436 -138932823 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 1 688 843 175 0 38 chr5 13604597 13604781 -138932478 - Lx7 LINE L1 0 7696 7520 1 688 343 181 21 11 chr5 13604790 13604885 -138932374 + Lx7 LINE L1 7433 7528 -168 1 688 2472 231 73 23 chr5 13604987 13605643 -138931616 - Lx2B LINE L1 -5 6995 6307 1 688 21 0 0 0 chr5 13605928 13605949 -138931310 + AT_rich Low_complexity Low_complexity 1 21 0 1 688 25 0 0 0 chr5 13607208 13607233 -138930026 + AT_rich Low_complexity Low_complexity 1 25 0 1 688 1194 246 223 12 chr5 13607479 13607611 -138929648 + RMER1C Other Other 813 989 -353 1 688 468 0 0 0 chr5 13607611 13607663 -138929596 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 688 1194 246 223 12 chr5 13607663 13607961 -138929298 + RMER1C Other Other 990 1333 -9 1 688 242 29 29 0 chr5 13609063 13609098 -138928161 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 688 2134 67 13 0 chr5 13609431 13609730 -138927529 - L1_Mus4 LINE L1 -4 6632 6330 1 688 186 43 0 0 chr5 13609752 13609775 -138927484 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 688 4543 78 7 5 chr5 13609783 13610403 -138926856 - L1_Mus1 LINE L1 -2 6565 5945 1 688 24 32 0 0 chr5 13610815 13610846 -138926413 + AT_rich Low_complexity Low_complexity 1 31 0 1 688 23 68 0 0 chr5 13610955 13610999 -138926260 + AT_rich Low_complexity Low_complexity 1 44 0 1 688 8464 135 27 99 chr5 13612564 13612843 -138924416 - RLTR21 LTR ERVK -4 1568 1287 1 688 318 26 0 0 chr5 13612843 13612882 -138924377 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 688 8464 135 27 99 chr5 13612882 13613060 -138924199 - RLTR21 LTR ERVK -286 1286 1121 1 688 393 75 0 0 chr5 13613060 13613113 -138924146 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1 688 8464 135 27 99 chr5 13613113 13614345 -138922914 - RLTR21 LTR ERVK -452 1120 1 1 688 2352 124 14 56 chr5 13614498 13614925 -138922334 - RLTR9E LTR ERVK 0 409 1 1 688 222 62 0 0 chr5 13615926 13615958 -138921301 + (T)n Simple_repeat Simple_repeat 1 32 0 1 688 189 131 32 16 chr5 13617906 13617930 -138919329 + T-rich Low_complexity Low_complexity 41 64 0 1 688 198 0 0 0 chr5 13617930 13617952 -138919307 + (TGG)n Simple_repeat Simple_repeat 3 24 0 1 688 189 131 32 16 chr5 13617952 13617989 -138919270 + T-rich Low_complexity Low_complexity 2 40 0 1 688 1217 54 0 0 chr5 13617994 13618141 -138919118 - B1_Mus1 SINE Alu 0 148 2 1 688 367 317 54 29 chr5 13618142 13618347 -138918912 + RMER15 LTR ERVL 334 543 -32 1 688 2107 203 23 47 chr5 13619448 13619919 -138917340 + RMER1C Other Other 722 1181 -161 1 688 509 193 14 14 chr5 13619989 13620136 -138917123 + CT-rich Low_complexity Low_complexity 1 147 0 1 688 697 182 14 21 chr5 13620136 13620276 -138916983 + RMER1C Other Other 1204 1342 0 1 688 220 27 54 0 chr5 13620276 13620313 -138916946 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 688 306 301 24 0 chr5 13620313 13620396 -138916863 + Lx7 LINE L1 7224 7308 -388 1 688 297 0 0 0 chr5 13620404 13620437 -138916822 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 688 41 58 0 0 chr5 13620614 13620683 -138916576 + AT_rich Low_complexity Low_complexity 1 69 0 1 688 891 98 36 12 chr5 13621027 13621192 -138916067 + Lx LINE L1 6486 6654 0 1 688 227 312 13 13 chr5 13621982 13622060 -138915199 - ID4_ SINE ID -3 80 3 1 688 184 161 121 61 chr5 13622367 13622433 -138914826 + MIRb SINE MIR 160 229 -39 1 688 24 0 0 0 chr5 13624028 13624052 -138913207 + AT_rich Low_complexity Low_complexity 1 24 0 1 688 479 279 45 109 chr5 13625311 13625512 -138911747 + B3A SINE B2 3 190 -8 1 688 22 0 0 0 chr5 13625512 13625534 -138911725 + AT_rich Low_complexity Low_complexity 1 22 0 1 688 247 281 68 38 chr5 13627453 13627586 -138909673 + MLT1C LTR MaLR 264 400 -67 1 688 222 174 0 0 chr5 13627748 13627794 -138909465 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 688 23 0 0 0 chr5 13628003 13628026 -138909233 + AT_rich Low_complexity Low_complexity 1 23 0 1 688 27 73 0 0 chr5 13629809 13629864 -138907395 + AT_rich Low_complexity Low_complexity 1 55 0 1 688 891 28 0 0 chr5 13630740 13630846 -138906413 + (GA)n Simple_repeat Simple_repeat 1 106 0 1 689 408 162 0 51 chr5 13632229 13632307 -138904952 + RLTR21 LTR ERVK 1233 1306 -266 1 689 208 167 24 0 chr5 13632607 13632649 -138904610 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 689 586 310 141 4 chr5 13632662 13632911 -138904348 - B4A SINE B4 -4 288 6 1 689 7668 141 58 126 chr5 13632912 13633166 -138904093 - RLTR21 LTR ERVK 0 1572 1304 1 689 411 119 0 0 chr5 13633166 13633233 -138904026 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 689 7668 141 58 126 chr5 13633233 13634279 -138902980 - RLTR21 LTR ERVK -269 1303 401 1 689 716 86 9 0 chr5 13634279 13634384 -138902875 + (TAGA)n Simple_repeat Simple_repeat 1 106 0 1 689 7668 141 58 126 chr5 13634384 13634768 -138902491 - RLTR21 LTR ERVK -1172 400 1 1 689 202 217 22 0 chr5 13634813 13634859 -138902400 + (CAT)n Simple_repeat Simple_repeat 3 49 0 1 689 266 296 49 39 chr5 13634899 13635001 -138902258 - RSINE1 SINE B4 -52 113 11 1 689 21 36 0 0 chr5 13635013 13635041 -138902218 + AT_rich Low_complexity Low_complexity 1 28 0 1 689 393 133 0 0 chr5 13635344 13635419 -138901840 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 1 689 1005 317 14 37 chr5 13635430 13635725 -138901534 - B4 SINE B4 -2 290 3 1 689 500 338 19 0 chr5 13636330 13636487 -138900772 - MER5A1 DNA MER1_type 0 166 7 1 689 441 116 0 0 chr5 13637386 13637455 -138899804 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 689 288 376 77 23 chr5 13637713 13637974 -138899285 + Charlie1b DNA MER1_type 1 275 -248 1 689 2225 188 28 24 chr5 13638579 13639003 -138898256 + L1VL2 LINE L1 67 492 -5843 1 689 541 111 11 0 chr5 13638984 13639074 -138898185 - MusHAL1 LINE L1 -2446 266 176 1 689 7302 156 86 36 chr5 13639074 13640557 -138896702 + L1_Mm LINE L1 3731 5287 -596 1 689 4772 120 18 0 chr5 13640558 13641267 -138895992 + Lx LINE L1 5931 6652 -2 1 689 596 219 39 39 chr5 13641526 13641654 -138895605 - B3 SINE B2 -88 128 1 1 689 35 41 0 0 chr5 13641901 13641950 -138895309 + AT_rich Low_complexity Low_complexity 1 49 0 1 689 508 354 11 111 chr5 13642196 13642564 -138894695 - MTE2a LTR MaLR -34 345 14 1 689 274 325 172 43 chr5 13642806 13643461 -138893798 - Arthur1 DNA Tip100 -1316 2631 1892 1 689 369 0 0 0 chr5 13643496 13643537 -138893722 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 689 252 336 103 58 chr5 13643902 13644145 -138893114 + Lx8 LINE L1 7185 7438 -35 1 689 609 242 31 0 chr5 13644196 13644324 -138892935 + B1_Mur3 SINE Alu 2 133 -16 1 689 897 112 5 63 chr5 13644622 13644813 -138892446 + GA-rich Low_complexity Low_complexity 1 180 0 1 689 509 44 0 14 chr5 13645049 13645118 -138892141 + (GGA)n Simple_repeat Simple_repeat 3 70 0 2 689 873 0 0 0 chr5 13645344 13645441 -138891818 + (TTCC)n Simple_repeat Simple_repeat 3 99 0 2 689 640 71 10 20 chr5 13645578 13645640 -138891619 + (TAG)n Simple_repeat Simple_repeat 1 62 0 2 689 315 0 0 0 chr5 13645640 13645675 -138891584 + (TTG)n Simple_repeat Simple_repeat 3 37 0 2 689 640 71 10 20 chr5 13645675 13645712 -138891547 + (TAG)n Simple_repeat Simple_repeat 3 39 0 2 689 744 61 0 0 chr5 13645718 13645816 -138891443 + (TGG)n Simple_repeat Simple_repeat 1 98 0 2 689 595 339 86 39 chr5 13645828 13646261 -138890998 - Lx9 LINE L1 -222 7422 6970 2 689 31004 99 7 0 chr5 13646340 13651573 -138885686 - L1_Mus1 LINE L1 0 6567 1295 2 689 205 214 14 41 chr5 13651923 13651996 -138885263 + T-rich Low_complexity Low_complexity 2 72 0 2 689 750 176 21 7 chr5 13652000 13652143 -138885116 - B1_Mur4 SINE Alu 0 150 6 2 689 278 254 0 16 chr5 13652354 13652418 -138884841 + CT-rich Low_complexity Low_complexity 1 63 0 2 689 358 282 16 57 chr5 13652699 13652800 -138884459 + RSINE1 SINE B4 47 145 -20 2 689 233 98 24 0 chr5 13652800 13652841 -138884418 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 689 358 282 16 57 chr5 13652841 13652863 -138884396 + RSINE1 SINE B4 146 165 0 2 689 30 27 0 0 chr5 13652863 13652900 -138884359 + AT_rich Low_complexity Low_complexity 1 37 0 2 689 21 71 0 0 chr5 13652972 13653014 -138884245 + AT_rich Low_complexity Low_complexity 1 42 0 2 689 306 0 0 0 chr5 13653336 13653370 -138883889 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 2 689 625 350 45 5 chr5 13655143 13655364 -138881895 - MER74C LTR ERVL -102 358 129 2 689 1138 82 0 0 chr5 13656011 13656158 -138881101 + B1_Mus2 SINE Alu 1 147 0 2 689 371 336 48 7 chr5 13656462 13656609 -138880650 - RSINE1 SINE B4 -8 157 5 2 689 1731 284 67 4 chr5 13657222 13657759 -138879500 + Lx5 LINE L1 5794 6364 -686 2 689 914 317 79 35 chr5 13657755 13658121 -138879138 + Lx5 LINE L1 6479 6860 -190 2 689 1116 196 141 28 chr5 13658136 13658517 -138878742 - RLTR1 LTR ERV1 0 624 135 2 689 665 257 35 12 chr5 13658614 13658787 -138878472 + Lx6 LINE L1 7258 7434 -26 2 689 244 281 29 74 chr5 13659237 13659479 -138877780 - RMER17D LTR ERVK -427 462 232 2 689 22 0 0 0 chr5 13660253 13660275 -138876984 + AT_rich Low_complexity Low_complexity 1 22 0 2 689 604 301 112 59 chr5 13662062 13662401 -138874858 + ORR1E LTR MaLR 1 357 -2 2 689 770 270 25 0 chr5 13662562 13662762 -138874497 + B3 SINE B2 1 205 -11 2 689 6935 36 0 0 chr5 13663787 13664832 -138872427 - L1Md_F3 LINE L1 -493 6091 5047 2 689 3801 48 2 8 chr5 13664832 13665313 -138871946 + L1Md_F3 LINE L1 6106 6583 -1 2 689 337 362 31 111 chr5 13665631 13665784 -138871475 + MLT1A0 LTR MaLR 11 167 -198 2 689 699 12 0 0 chr5 13665784 13665864 -138871395 + (TC)n Simple_repeat Simple_repeat 1 80 0 2 689 337 362 31 111 chr5 13665864 13665999 -138871260 + MLT1A0 LTR MaLR 168 276 -89 2 689 315 325 13 19 chr5 13666400 13666557 -138870702 + (TAGA)n Simple_repeat Simple_repeat 1 156 0 2 689 23 33 0 0 chr5 13667334 13667364 -138869895 + AT_rich Low_complexity Low_complexity 1 30 0 2 689 193 280 160 0 chr5 13667515 13667590 -138869669 - MER5A DNA MER1_type -65 124 38 2 689 1318 231 90 3 chr5 13671174 13671495 -138865764 - ORR1D1 LTR MaLR -25 349 1 2 689 864 101 34 0 chr5 13671797 13671946 -138865313 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 2 689 261 211 0 0 chr5 13671947 13672004 -138865255 + G-rich Low_complexity Low_complexity 1 57 0 2 689 315 0 50 0 chr5 13672004 13672044 -138865215 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 2 689 1171 62 0 0 chr5 13672478 13672624 -138864635 + B1_Mus1 SINE Alu 2 147 -1 2 689 363 238 30 30 chr5 13672716 13672885 -138864374 + (TCTCTG)n Simple_repeat Simple_repeat 6 174 0 2 689 993 332 103 23 chr5 13672898 13673511 -138863748 - Lx7 LINE L1 -380 7316 6655 2 689 249 336 40 32 chr5 13673519 13673645 -138863614 - Lx7 LINE L1 -1233 6463 6337 2 689 2089 129 50 28 chr5 13673656 13674015 -138863244 - ORR1B2 LTR MaLR 0 367 1 2 689 6776 195 39 16 chr5 13674020 13675490 -138861769 - ORR1B2-int LTR MaLR -6 1503 1 2 689 1795 205 20 15 chr5 13675490 13675832 -138861427 - ORR1B2 LTR MaLR 0 367 24 2 689 23731 17 1 0 chr5 13675832 13678586 -138858673 + L1Md_A LINE L1 2830 5585 -298 2 689 8439 33 0 0 chr5 13678587 13679583 -138857676 + L1Md_A LINE L1 5587 6582 0 2 689 499 245 0 0 chr5 13679625 13679727 -138857532 + PB1D9 SINE Alu 19 120 0 2 689 664 315 5 36 chr5 13679953 13680174 -138857085 + B3 SINE B2 3 216 0 2 689 614 155 9 0 chr5 13680207 13680323 -138856936 + (TA)n Simple_repeat Simple_repeat 2 118 0 2 689 201 94 0 0 chr5 13681479 13681511 -138855748 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2 689 1107 28 28 0 chr5 13681517 13681659 -138855600 - B1_Mus1 SINE Alu 0 148 3 2 689 954 109 51 0 chr5 13681890 13682027 -138855232 - B1_Mur4 SINE Alu -5 145 2 2 689 1587 208 37 31 chr5 13682027 13682349 -138854910 - ORR1B2 LTR MaLR -43 324 1 2 689 233 387 36 0 chr5 13682350 13682461 -138854798 + LTR16B1 LTR ERVL 237 351 -129 2 689 761 334 56 56 chr5 13682830 13683331 -138853928 - Lx8 LINE L1 -4 7469 6969 2 689 576 272 118 47 chr5 13683377 13683533 -138853726 - Lx8 LINE L1 -597 6876 6710 2 689 1165 202 159 74 chr5 13683533 13683885 -138853374 + ORR1C2 LTR MaLR 1 382 -2 2 689 576 272 118 47 chr5 13683885 13683940 -138853319 - Lx8 LINE L1 -764 6709 6650 2 689 1327 84 17 0 chr5 13684551 13684729 -138852530 - B2_Mm2 SINE B2 -14 181 1 2 689 243 125 0 0 chr5 13684937 13684977 -138852282 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 689 1727 264 96 16 chr5 13684984 13685485 -138851774 - RMER15 LTR ERVL -34 541 1 2 689 21 0 0 0 chr5 13686800 13686821 -138850438 + AT_rich Low_complexity Low_complexity 1 21 0 2 689 45 19 0 0 chr5 13687108 13687160 -138850099 + AT_rich Low_complexity Low_complexity 1 52 0 2 689 269 51 26 0 chr5 13687239 13687278 -138849981 + (TATG)n Simple_repeat Simple_repeat 1 40 0 2 689 391 320 73 104 chr5 13687286 13687464 -138849795 - B4A SINE B4 -12 280 97 2 689 2440 146 15 25 chr5 13687464 13687872 -138849387 - MTB_Mm LTR MaLR 0 407 4 2 689 391 320 73 104 chr5 13687872 13687982 -138849277 - B4A SINE B4 -196 96 1 2 689 7241 44 29 0 chr5 13688533 13689401 -138847858 + RLTR13B1 LTR ERVK 1 893 0 2 689 441 0 0 0 chr5 13689401 13689450 -138847809 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 689 332 307 64 58 chr5 13690346 13690519 -138846740 + MER5B DNA MER1_type 4 177 -1 2 689 204 40 0 0 chr5 13691015 13691040 -138846219 + (T)n Simple_repeat Simple_repeat 1 25 0 2 689 22 0 0 0 chr5 13692542 13692564 -138844695 + AT_rich Low_complexity Low_complexity 1 22 0 2 689 202 347 0 0 chr5 13693319 13693394 -138843865 - MIRb SINE MIR -37 231 157 2 689 195 186 0 0 chr5 13693502 13693545 -138843714 + A-rich Low_complexity Low_complexity 1 43 0 2 689 2494 194 86 105 chr5 13693590 13694274 -138842985 + RMER1B Other Other 396 1066 0 2 689 703 159 14 7 chr5 13694274 13694420 -138842839 + GA-rich Low_complexity Low_complexity 1 147 0 2 689 186 71 0 0 chr5 13695192 13695220 -138842039 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 689 298 253 0 0 chr5 13695262 13695337 -138841922 + CT-rich Low_complexity Low_complexity 2 76 0 2 689 423 0 0 0 chr5 13695782 13695829 -138841430 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 689 700 318 8 27 chr5 13696117 13696376 -138840883 - Lx6 LINE L1 -28 7432 7179 2 689 1952 37 0 3 chr5 13696358 13696621 -138840638 + L1Md_T LINE L1 5689 5945 -637 2 689 855 290 20 12 chr5 13696616 13696891 -138840368 - Lx6 LINE L1 -289 7171 6949 2 689 951 165 5 21 chr5 13696901 13697093 -138840166 + Lx6 LINE L1 5732 5920 -1540 2 689 7840 54 6 1 chr5 13697249 13698887 -138838372 - L1Md_F3 LINE L1 0 6584 4940 2 689 192 27 0 75 chr5 13699095 13699135 -138838124 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 2 689 260 340 91 14 chr5 13700147 13700290 -138836969 - MER20 DNA MER1_type -20 199 46 2 689 276 337 0 10 chr5 13701053 13701155 -138836104 - HERV16-int LTR ERVL -3507 1489 1389 2 689 1024 134 64 0 chr5 13701651 13701822 -138835437 + B2_Mm2 SINE B2 3 184 -11 2 689 236 77 0 25 chr5 13702684 13702724 -138834535 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 689 23 54 0 0 chr5 13703233 13703270 -138833989 + AT_rich Low_complexity Low_complexity 1 37 0 2 689 228 35 0 0 chr5 13704262 13704291 -138832968 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 689 400 242 291 24 chr5 13705742 13705907 -138831352 + B3 SINE B2 2 210 -6 2 689 7127 61 52 10 chr5 13707846 13708788 -138828471 - L1Md_F2 LINE L1 -13 6569 5588 2 689 2479 55 0 3 chr5 13708802 13709114 -138828145 + L1Md_F2 LINE L1 5281 5591 -292 2 689 661 290 218 44 chr5 13709573 13710027 -138827232 - MT2A LTR ERVL 0 533 1 2 689 1888 217 10 33 chr5 13710385 13710702 -138826557 - RLTR11A LTR ERVK -5 523 219 2 689 563 40 14 0 chr5 13710702 13710776 -138826483 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 689 1888 220 49 36 chr5 13710776 13710936 -138826323 - RLTR11A LTR ERVK -308 219 2 2 689 621 237 156 0 chr5 13710936 13711102 -138826157 + B3 SINE B2 24 216 0 2 689 341 230 13 13 chr5 13711128 13711203 -138826056 + B3A SINE B2 5 79 -119 2 689 549 314 74 5 chr5 13711181 13711370 -138825889 + B3 SINE B2 15 216 0 2 689 261 175 0 0 chr5 13712432 13712467 -138824792 + A-rich Low_complexity Low_complexity 1 35 0 2 689 1163 68 0 0 chr5 13712467 13712614 -138824645 + B1_Mus2 SINE Alu 1 147 0 2 689 261 175 0 0 chr5 13712614 13712635 -138824624 + A-rich Low_complexity Low_complexity 36 56 0 2 689 471 306 97 8 chr5 13712766 13713003 -138824256 - MER121 Unknown Unknown -68 344 87 2 689 696 311 25 25 chr5 13713147 13713345 -138823914 + B3 SINE B2 19 216 0 2 689 24 0 0 0 chr5 13714076 13714100 -138823159 + AT_rich Low_complexity Low_complexity 1 24 0 2 689 661 110 0 106 chr5 13714100 13714232 -138823027 - Lx2 LINE L1 0 6997 6880 2 689 209 182 18 0 chr5 13714242 13714297 -138822962 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 2 689 1208 247 70 45 chr5 13714529 13714885 -138822374 + ORR1D1 LTR MaLR 10 374 0 2 689 3742 7 121 0 chr5 13714929 13715369 -138821890 - MT2_Mm LTR ERVL 0 493 1 2 689 196 28 26 53 chr5 13715792 13715830 -138821429 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 689 327 377 49 40 chr5 13716657 13716881 -138820378 - MLT1A0 LTR MaLR -139 226 1 3 689 1500 23 0 0 chr5 13716892 13717068 -138820191 + (GGAA)n Simple_repeat Simple_repeat 4 179 0 3 689 25 0 0 0 chr5 13717889 13717914 -138819345 + AT_rich Low_complexity Low_complexity 1 25 0 3 689 442 274 51 47 chr5 13718511 13718764 -138818495 - L1MA7 LINE L1 -198 6093 5840 3 689 1783 286 49 25 chr5 13719129 13719763 -138817496 - Lx5 LINE L1 -598 6452 5804 3 689 1694 291 33 16 chr5 13719762 13720417 -138816842 + Lx6 LINE L1 6455 7434 -26 3 689 654 169 29 0 chr5 13720447 13720582 -138816677 + B1_Mus2 SINE Alu 3 150 0 3 689 252 86 0 0 chr5 13720916 13720951 -138816308 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 689 207 0 0 0 chr5 13721114 13721137 -138816122 + (A)n Simple_repeat Simple_repeat 1 23 0 3 689 252 0 0 0 chr5 13723097 13723125 -138814134 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3 689 21 0 0 0 chr5 13723424 13723445 -138813814 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 21 36 0 0 chr5 13723846 13723874 -138813385 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 36865 48 5 11 chr5 13724084 13730360 -138806899 - L1Md_T LINE L1 -2 6580 331 3 689 622 280 75 79 chr5 13730488 13730740 -138806519 + B4A SINE B4 42 292 0 3 689 800 346 121 28 chr5 13731158 13731556 -138805703 + MER70A LTR ERVL 26 460 -12 3 689 580 264 21 0 chr5 13731695 13731839 -138805420 + ORR1D1 LTR MaLR 1 147 -227 3 689 794 149 159 12 chr5 13731848 13732018 -138805241 + B2_Mm2 SINE B2 1 195 0 3 689 850 281 49 13 chr5 13732015 13732239 -138805020 + ORR1D1 LTR MaLR 143 374 0 3 689 2493 161 142 61 chr5 13732259 13732894 -138804365 + RMER6C LTR ERVK 1 686 -4 3 689 5517 224 63 29 chr5 13732900 13734209 -138803050 + ORR1D1-int LTR MaLR 18 1370 0 3 689 1364 245 53 8 chr5 13734209 13734567 -138802692 + ORR1D1 LTR MaLR 1 374 0 3 689 471 35 0 0 chr5 13734567 13734624 -138802635 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 689 219 69 0 0 chr5 13735365 13735394 -138801865 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 689 2200 191 75 6 chr5 13735904 13736384 -138800875 - Lx3C LINE L1 -3 6973 6461 3 689 5152 88 20 77 chr5 13736411 13737345 -138799914 + L1VL1 LINE L1 224 1104 -5318 3 689 1953 41 0 20 chr5 13737397 13737644 -138799615 + L1Md_F2 LINE L1 6341 6582 0 3 689 348 313 61 8 chr5 13737661 13737793 -138799466 + RSINE1 SINE B4 16 154 -11 3 689 180 77 0 0 chr5 13737824 13737850 -138799409 + (CG)n Simple_repeat Simple_repeat 2 27 0 3 689 315 0 0 0 chr5 13737850 13737884 -138799375 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 689 2471 134 79 14 chr5 13738040 13738472 -138798787 - RMER6B LTR ERVK -1 460 1 3 689 576 179 47 0 chr5 13738473 13738579 -138798680 - RMER6B LTR ERVK -350 111 1 3 689 707 261 76 24 chr5 13739495 13739746 -138797513 - Lx5 LINE L1 -766 6284 6021 3 689 1446 286 3 14 chr5 13739746 13740100 -138797159 + Lx5 LINE L1 6694 7043 -7 3 689 555 16 0 0 chr5 13741052 13741116 -138796143 + (TAG)n Simple_repeat Simple_repeat 2 65 0 3 689 227 134 0 99 chr5 13741227 13741250 -138796009 + (TTTAA)n Simple_repeat Simple_repeat 1 21 0 3 689 1186 121 16 0 chr5 13741250 13741432 -138795827 + B2_Mm2 SINE B2 1 185 -10 3 689 227 134 0 99 chr5 13741432 13741499 -138795760 + (TTTAA)n Simple_repeat Simple_repeat 1 60 0 3 689 297 250 75 28 chr5 13741676 13741783 -138795476 + MER82 DNA MER2_type 281 392 -261 3 689 225 244 0 0 chr5 13741915 13741960 -138795299 + GA-rich Low_complexity Low_complexity 3 47 0 3 689 186 216 0 89 chr5 13742244 13742300 -138794959 - L3b LINE CR1 -284 198 148 3 689 461 333 28 33 chr5 13742308 13742522 -138794737 - MIR SINE MIR -4 258 46 3 689 339 352 33 0 chr5 13742781 13742903 -138794356 + L4 LINE RTE 1590 1715 -314 3 689 681 271 92 15 chr5 13743105 13743300 -138793959 - B3 SINE B2 -1 215 6 3 689 28 0 0 0 chr5 13743518 13743546 -138793713 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 986 241 11 0 chr5 13743739 13743926 -138793333 - 7SLRNA srpRNA srpRNA -113 201 13 3 689 12382 145 12 10 chr5 13744068 13745083 -138792176 + Lx LINE L1 3628 4634 -1243 3 689 186 71 0 0 chr5 13745083 13745111 -138792148 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 689 12382 147 13 8 chr5 13745111 13747094 -138790165 + Lx LINE L1 4635 6641 -13 3 689 257 301 15 8 chr5 13747117 13747251 -138790008 + L1M5 LINE L1 5652 5786 -378 3 689 360 0 0 0 chr5 13747252 13747292 -138789967 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 689 200 235 62 0 chr5 13747833 13747914 -138789345 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 3 689 258 192 0 0 chr5 13748168 13748220 -138789039 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 689 608 164 54 7 chr5 13748882 13749029 -138788230 - Lx2B LINE L1 0 7000 6847 3 689 1765 200 38 27 chr5 13749072 13749442 -138787817 + ORR1D1 LTR MaLR 1 374 0 3 689 32385 66 1 10 chr5 13749784 13754891 -138782368 + L1Md_F3 LINE L1 527 5587 -296 3 689 8005 45 17 0 chr5 13754892 13755870 -138781389 + L1Md_F3 LINE L1 5589 6583 -1 3 689 27 49 0 0 chr5 13755951 13755992 -138781267 + AT_rich Low_complexity Low_complexity 1 41 0 3 689 3159 235 40 4 chr5 13756098 13756819 -138780440 - Lx5 LINE L1 -3 7047 6301 3 689 1779 107 90 64 chr5 13756820 13757131 -138780128 - ORR1A2 LTR MaLR -8 319 1 3 689 362 253 0 37 chr5 13757131 13757213 -138780046 - Lx5 LINE L1 -742 6308 6230 3 689 22 0 0 0 chr5 13757337 13757359 -138779900 + AT_rich Low_complexity Low_complexity 1 22 0 3 689 431 263 64 28 chr5 13757363 13757504 -138779755 + MER3 DNA MER1_type 57 202 -7 3 689 1607 221 38 88 chr5 13757970 13758388 -138778871 - RMER19C LTR ERVK 0 611 215 3 689 877 113 13 0 chr5 13758390 13758549 -138778710 + (TG)n Simple_repeat Simple_repeat 2 162 0 3 689 279 245 0 0 chr5 13758573 13758667 -138778592 + (TG)n Simple_repeat Simple_repeat 2 95 0 3 689 545 203 0 6 chr5 13758731 13758909 -138778350 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 689 21 0 0 0 chr5 13759285 13759306 -138777953 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 320 344 88 0 chr5 13759398 13759523 -138777736 + RSINE1 SINE B4 18 153 -12 3 689 297 0 0 0 chr5 13759525 13759558 -138777701 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 689 531 0 0 0 chr5 13759558 13759616 -138777643 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 689 232 303 0 0 chr5 13759733 13759799 -138777460 + Tigger5 DNA MER2_type 2291 2356 -50 3 689 4237 131 65 18 chr5 13760349 13761122 -138776137 - RMER17D2 LTR ERVK 0 809 1 3 689 262 284 44 0 chr5 13761556 13761653 -138775606 + ID4_ SINE ID 8 110 -42 3 689 315 0 0 0 chr5 13761835 13761870 -138775389 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 689 326 164 18 0 chr5 13762041 13762096 -138775163 - HAL1-3A_ME LINE L1 -824 2034 1979 3 86 3103 202 55 19 chr5 13762374 13763138 -138774121 + L1_Mur2 LINE L1 3074 3855 -2022 3 690 423 0 0 0 chr5 13763138 13763185 -138774074 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 690 3103 202 55 19 chr5 13763185 13763295 -138773964 + L1_Mur2 LINE L1 3856 3978 -1899 3 690 46 0 0 0 chr5 13764791 13764837 -138772422 + AT_rich Low_complexity Low_complexity 1 46 0 3 690 479 211 9 0 chr5 13764876 13764990 -138772269 + L1_Mur2 LINE L1 4105 4219 -1658 3 690 1287 222 3 9 chr5 13764991 13765318 -138771941 - ORR1A3-int LTR MaLR -920 1043 719 3 690 528 209 16 219 chr5 13765206 13765457 -138771802 - MT2B LTR ERVL -339 262 63 3 690 1041 210 5 0 chr5 13765457 13765676 -138771583 + Lx2A LINE L1 6781 7000 -8 3 690 851 238 141 134 chr5 13765700 13766141 -138771118 - RMER6B LTR ERVK -17 444 1 3 690 498 289 26 67 chr5 13766488 13766681 -138770578 + RLTR19A LTR ERVK 194 378 -118 3 690 898 166 69 0 chr5 13766923 13767098 -138770161 - RLTR19 LTR ERVK -304 195 9 3 690 186 43 0 0 chr5 13769355 13769378 -138767881 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 3 690 405 0 0 0 chr5 13769408 13769453 -138767806 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 690 251 268 72 0 chr5 13772281 13772378 -138764881 + B1_Mus2 SINE Alu 22 125 -22 3 690 255 308 107 16 chr5 13772794 13772916 -138764343 - B3 SINE B2 -11 205 73 3 690 3221 201 88 7 chr5 13773700 13774127 -138763132 - RMER17D2 LTR ERVK 0 809 336 3 690 869 19 9 0 chr5 13774127 13774234 -138763025 + (GGAGA)n Simple_repeat Simple_repeat 1 108 0 3 690 3221 201 88 7 chr5 13774234 13774554 -138762705 - RMER17D2 LTR ERVK -474 335 2 3 690 262 262 33 0 chr5 13774989 13775050 -138762209 + ID4_ SINE ID 8 70 -13 3 690 206 135 0 26 chr5 13775260 13775298 -138761961 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 690 786 70 0 0 chr5 13775463 13775577 -138761682 + (TC)n Simple_repeat Simple_repeat 2 115 0 3 690 189 0 0 0 chr5 13775580 13775601 -138761658 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 690 2804 211 32 65 chr5 13775882 13776292 -138760967 + L1_Mur2 LINE L1 3074 3486 -2391 3 690 423 0 0 0 chr5 13776292 13776339 -138760920 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 690 2804 206 180 56 chr5 13776339 13776988 -138760271 + L1_Mur2 LINE L1 3487 4200 -1677 3 690 4030 206 26 97 chr5 13776993 13777234 -138760025 - ORR1A4-int LTR MaLR -898 1065 826 3 690 2477 91 64 15 chr5 13777234 13777626 -138759633 + RLTR10A LTR ERVK 1 411 0 3 690 4030 206 26 97 chr5 13777626 13778516 -138758743 - ORR1A4-int LTR MaLR -1138 825 15 3 690 862 210 156 85 chr5 13778529 13778836 -138758423 - ORR1A4 LTR MaLR 0 329 1 3 690 1726 177 3 0 chr5 13778841 13779141 -138758118 - ORR1A2 LTR MaLR 0 327 27 3 690 395 362 54 5 chr5 13779497 13779683 -138757576 - Lx8 LINE L1 -166 7307 7113 3 690 15821 204 32 81 chr5 13780791 13784610 -138752649 + Lx2A1 LINE L1 934 4573 -1313 3 690 1465 32 0 11 chr5 13784610 13784798 -138752461 + L1Md_F3 LINE L1 6397 6582 -2 3 690 15821 206 32 89 chr5 13784798 13785541 -138751718 + Lx2A1 LINE L1 4574 5263 -623 3 690 968 124 7 0 chr5 13785541 13785686 -138751573 + B1_Mm SINE Alu 2 147 0 3 690 15821 163 26 42 chr5 13785686 13786479 -138750780 + Lx2A1 LINE L1 5264 6022 -986 3 690 9781 192 28 20 chr5 13786479 13790029 -138747230 + Lx2A1 LINE L1 3420 7004 -4 3 690 519 31 0 0 chr5 13790035 13790100 -138747159 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 690 861 228 145 122 chr5 13790101 13790535 -138746724 - RMER6B LTR ERVK -17 444 1 3 690 244 236 0 0 chr5 13790814 13790869 -138746390 - RLTR19 LTR ERVK -1 498 444 4 690 446 248 9 27 chr5 13790862 13790974 -138746285 + RLTR19A LTR ERVK 186 295 -201 4 690 405 0 0 0 chr5 13790976 13791021 -138746238 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 4 690 1003 156 43 11 chr5 13791311 13791499 -138745760 - RLTR19 LTR ERVK -304 195 2 4 690 3154 37 0 5 chr5 13791898 13792279 -138744980 + L1Md_A LINE L1 6199 6577 -5 4 690 193 370 12 0 chr5 13794072 13794153 -138743106 - MER5A DNA MER1_type -96 93 12 4 690 263 276 21 20 chr5 13796861 13796960 -138740299 + B1_Mus1 SINE Alu 22 128 -21 4 690 329 264 100 8 chr5 13797366 13797496 -138739763 - B3 SINE B2 -2 214 73 4 690 3736 137 161 17 chr5 13798277 13799054 -138738205 - RMER17D LTR ERVK 0 889 1 4 690 231 265 44 0 chr5 13799473 13799541 -138737718 + BC1_Mm scRNA scRNA 8 78 -74 4 690 213 132 0 0 chr5 13799741 13799779 -138737480 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 690 206 213 0 0 chr5 13799935 13799982 -138737277 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 4 690 420 20 0 0 chr5 13799985 13800034 -138737225 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 690 2998 219 33 19 chr5 13800312 13800721 -138736538 + L1_Mur2 LINE L1 3074 3486 -2391 4 690 423 0 0 0 chr5 13800721 13800768 -138736491 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 4 690 2998 219 33 19 chr5 13800768 13801108 -138736151 + L1_Mur2 LINE L1 3487 3825 -2052 4 690 194 0 39 0 chr5 13801108 13801134 -138736125 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 690 2998 215 429 13 chr5 13801134 13801380 -138735879 + L1_Mur2 LINE L1 3826 4183 -1694 4 690 3994 214 19 102 chr5 13801394 13802527 -138734732 - ORR1A4-int LTR MaLR -919 1044 5 4 690 779 232 162 76 chr5 13802531 13802587 -138734672 - ORR1A4 LTR MaLR 0 329 274 4 690 477 0 0 0 chr5 13802587 13802640 -138734619 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 4 690 779 232 162 76 chr5 13802640 13802886 -138734373 - ORR1A4 LTR MaLR -56 273 1 4 690 1658 196 3 21 chr5 13802891 13803224 -138734035 - ORR1A2 LTR MaLR 0 327 1 4 690 333 0 0 0 chr5 13803409 13803446 -138733813 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 690 386 362 54 5 chr5 13803567 13803753 -138733506 - Lx8 LINE L1 -166 7307 7113 4 690 288 53 0 0 chr5 13803758 13803796 -138733463 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 4 690 9043 198 44 31 chr5 13804893 13807720 -138729539 + L1VL4 LINE L1 934 3795 -2091 4 690 4556 182 20 45 chr5 13807716 13808750 -138728509 + Lx2A1 LINE L1 5993 7000 -8 4 690 243 0 0 0 chr5 13808754 13808781 -138728478 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 690 234 200 329 0 chr5 13808783 13808853 -138728406 - RMER6B LTR ERVK -20 441 349 4 690 249 65 0 0 chr5 13808855 13808886 -138728373 - RMER6B LTR ERVK -430 31 1 4 690 457 204 11 21 chr5 13809213 13809308 -138727951 + RLTR19A LTR ERVK 186 279 -217 4 690 333 80 56 11 chr5 13809322 13809411 -138727848 + (TTTTTG)n Simple_repeat Simple_repeat 3 95 0 4 690 910 188 43 5 chr5 13809700 13809887 -138727372 - RLTR19 LTR ERVK -304 195 2 4 690 318 129 0 0 chr5 13811951 13812013 -138725246 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 690 289 236 28 0 chr5 13814877 13814949 -138722310 + B1_Mus2 SINE Alu 52 125 -22 4 690 329 256 100 8 chr5 13815358 13815488 -138721771 - B3 SINE B2 -2 214 73 4 690 3644 178 92 1 chr5 13816269 13817011 -138720248 - RMER17D2 LTR ERVK 0 809 1 4 690 235 250 67 0 chr5 13817263 13817367 -138719892 - Lx9 LINE L1 -2 7642 7532 4 690 1038 285 25 23 chr5 13817874 13818272 -138718987 + Lx9 LINE L1 7064 7462 -182 4 690 570 137 0 0 chr5 13818276 13818371 -138718888 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 690 244 279 35 0 chr5 13818371 13818457 -138718802 + (TATATG)n Simple_repeat Simple_repeat 4 92 0 4 690 23 0 0 0 chr5 13818546 13818569 -138718690 + AT_rich Low_complexity Low_complexity 1 23 0 4 690 1538 191 141 47 chr5 13819956 13820521 -138716738 + RMER6D LTR ERVK 1 682 -8 4 690 448 339 39 49 chr5 13820640 13820845 -138716414 + B3A SINE B2 2 204 -12 4 690 522 274 7 0 chr5 13821187 13821322 -138715937 + MT2A LTR ERVL 1 136 -397 4 690 665 254 154 5 chr5 13821331 13821552 -138715707 + MT2A LTR ERVL 273 526 -7 4 690 1109 219 104 90 chr5 13821557 13821767 -138715492 - ORR1D1 LTR MaLR -2 372 159 4 690 234 91 0 0 chr5 13821767 13821800 -138715459 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 4 690 1109 219 104 90 chr5 13821800 13821955 -138715304 - ORR1D1 LTR MaLR -216 158 2 4 690 213 39 0 0 chr5 13823396 13823422 -138713837 + (A)n Simple_repeat Simple_repeat 1 26 0 4 690 2619 172 88 31 chr5 13823895 13824524 -138712735 - Lx5 LINE L1 -6 7052 6358 4 690 342 0 0 0 chr5 13824552 13824590 -138712669 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 4 690 270 262 9 18 chr5 13824625 13824734 -138712525 + Lx7 LINE L1 7583 7690 -6 4 690 739 249 201 0 chr5 13824832 13825081 -138712178 + RMER1B Other Other 65 363 -703 4 690 701 283 92 9 chr5 13825110 13825338 -138711921 + RMER1B Other Other 150 396 -670 4 690 313 336 70 8 chr5 13825308 13825437 -138711822 + RMER1A Other Other 86 222 -808 4 690 202 68 0 64 chr5 13825475 13825522 -138711737 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 690 511 135 21 0 chr5 13825513 13825609 -138711650 + GA-rich Low_complexity Low_complexity 3 100 0 4 690 1178 297 130 2 chr5 13825609 13826032 -138711227 + RMER1A Other Other 4 445 -585 4 690 2406 183 56 0 chr5 13826000 13826447 -138710812 + RMER1A Other Other 283 754 -276 4 690 1819 191 106 62 chr5 13826603 13827056 -138710203 - RMER20B LTR ERVK -154 473 1 4 690 2726 159 65 31 chr5 13827366 13827962 -138709297 - Lx5 LINE L1 -984 6066 5438 4 690 766 170 64 32 chr5 13827962 13828150 -138709109 - B2_Mm2 SINE B2 0 195 2 4 690 2726 155 71 42 chr5 13828150 13828330 -138708929 - Lx5 LINE L1 -440 5437 5268 4 690 414 273 31 15 chr5 13828330 13828460 -138708799 - RMER10B LTR ERVL 0 398 267 4 690 459 261 76 25 chr5 13829199 13829356 -138707903 - RLTR41 LTR ERV1 -15 431 267 4 690 4925 158 29 26 chr5 13829970 13830971 -138706288 - Lx5 LINE L1 -782 5095 4092 4 690 301 163 0 0 chr5 13830966 13831015 -138706244 + Lx5 LINE L1 6332 6380 -670 4 690 974 169 40 0 chr5 13831029 13831230 -138706029 - MERVL_2A-int LTR ERVL -2661 2824 2616 4 690 2276 217 55 3 chr5 13831230 13832218 -138705041 - MERVL_2A-int LTR ERVL -3078 2683 1645 4 690 801 248 70 44 chr5 13832218 13832346 -138704913 - MTC LTR MaLR -166 255 137 4 690 4447 138 63 26 chr5 13832346 13833126 -138704133 - RMER17D2 LTR ERVK 0 809 1 4 690 790 248 70 44 chr5 13833126 13833225 -138704034 - MTC LTR MaLR -285 136 22 4 690 1217 224 49 76 chr5 13833288 13833617 -138703642 - ORR1A4 LTR MaLR -9 320 1 4 690 328 348 33 6 chr5 13833620 13833802 -138703457 + L1M2 LINE L1 4933 5119 -1024 4 690 200 211 0 0 chr5 13833940 13833978 -138703281 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 4 690 306 255 57 0 chr5 13833978 13834084 -138703175 + Lx9 LINE L1 7362 7473 -171 4 690 432 123 0 0 chr5 13834095 13834168 -138703091 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 690 387 0 0 0 chr5 13834291 13834334 -138702925 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 690 1064 67 0 0 chr5 13834336 13834471 -138702788 - B1_Mm SINE Alu -6 141 7 4 690 420 319 0 7 chr5 13834618 13834757 -138702502 - URR1B DNA MER1_type 0 225 88 4 690 338 295 29 82 chr5 13834814 13835021 -138702238 + L1_Mur3 LINE L1 5261 5456 -708 4 690 258 143 0 0 chr5 13835021 13835070 -138702189 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 690 2539 219 10 8 chr5 13835204 13835716 -138701543 - Lx4A LINE L1 0 7058 6546 4 690 946 58 7 28 chr5 13835755 13835896 -138701363 + L1Md_A LINE L1 6445 6582 0 4 690 1132 153 105 0 chr5 13835917 13836047 -138701212 + L1Md_F2 LINE L1 6352 6481 -101 4 690 207 69 0 0 chr5 13836047 13836076 -138701183 + (TGGG)n Simple_repeat Simple_repeat 1 29 0 4 690 1132 153 105 0 chr5 13836076 13836154 -138701105 + L1Md_F2 LINE L1 6482 6580 -2 4 690 941 236 45 97 chr5 13836186 13836496 -138700763 - ORR1B1 LTR MaLR -58 336 43 4 690 588 175 73 9 chr5 13836849 13836974 -138700285 - RMER19B LTR ERVK -18 884 766 4 690 2161 204 32 19 chr5 13836994 13837464 -138699795 - Lx3B LINE L1 -8 6965 6490 4 690 2767 212 88 26 chr5 13837466 13838183 -138699076 - RMER19B LTR ERVK -139 763 3 4 690 1059 218 0 0 chr5 13839520 13839759 -138697500 - RMER6-int LTR ERVK -2452 725 487 4 690 1608 250 16 7 chr5 13839798 13840221 -138697038 - RMER6-int LTR ERVK -2667 510 84 4 690 446 187 231 87 chr5 13840457 13840695 -138696564 - RMER6D LTR ERVK -400 320 1 4 690 1885 217 35 26 chr5 13840963 13841417 -138695842 + RMER6A LTR ERVK 1 458 -298 4 690 1154 227 140 23 chr5 13841417 13841809 -138695450 - Lx5 LINE L1 -779 6271 5834 4 690 6554 204 43 46 chr5 13841806 13843513 -138693746 + L1_Mur2 LINE L1 1745 3446 -2431 4 690 291 28 0 0 chr5 13843540 13843576 -138693683 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 690 1294 61 0 0 chr5 13845010 13845157 -138692102 + B1_Mm SINE Alu 1 147 0 4 690 207 105 26 0 chr5 13845157 13845195 -138692064 + (CAAAC)n Simple_repeat Simple_repeat 1 39 0 4 690 553 270 101 8 chr5 13845379 13845607 -138691652 + RLTR6-int LTR ERV1 4910 5090 -2688 4 690 180 111 0 0 chr5 13845652 13845679 -138691580 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 690 466 200 18 54 chr5 13845680 13845791 -138691468 - PB1D9 SINE Alu -1 119 13 4 690 22 0 0 0 chr5 13845803 13845825 -138691434 + AT_rich Low_complexity Low_complexity 1 22 0 4 690 180 77 0 0 chr5 13846073 13846099 -138691160 + (T)n Simple_repeat Simple_repeat 1 26 0 4 690 907 191 134 0 chr5 13846964 13847158 -138690101 + URR1A DNA MER1_type 1 220 -6 4 690 1345 114 112 16 chr5 13847894 13848143 -138689116 + RMER16-int LTR ERVK 1000 1272 -4865 4 690 1949 9 0 0 chr5 13848143 13848356 -138688903 + L1Md_A LINE L1 5374 5586 -297 4 690 9336 16 0 0 chr5 13848356 13849351 -138687908 + L1Md_A LINE L1 5587 6581 -1 4 690 23045 146 38 21 chr5 13849378 13853326 -138683933 + RMER16-int LTR ERVK 1393 5404 -2 4 690 1143 241 114 42 chr5 13853366 13853752 -138683507 + RMER16 LTR ERVK 120 533 0 4 690 9616 189 63 24 chr5 13853755 13854554 -138682705 + L1_Mur2 LINE L1 2596 3477 -2400 4 690 315 0 0 0 chr5 13854554 13854589 -138682670 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 690 9616 189 63 24 chr5 13854589 13856047 -138681212 + L1_Mur2 LINE L1 3478 4942 -935 4 690 336 122 0 0 chr5 13856047 13856096 -138681163 - MERVL_2A-int LTR ERVL -3136 2625 2577 4 690 1362 189 48 116 chr5 13856102 13856359 -138680900 + RMER19B LTR ERVK 501 755 -147 4 690 2929 147 10 10 chr5 13856359 13856840 -138680419 + Lx3B LINE L1 6492 6972 -1 4 690 261 0 0 0 chr5 13856843 13856872 -138680387 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 4 690 1362 189 48 116 chr5 13856872 13856907 -138680352 + RMER19B LTR ERVK 756 766 -136 4 690 180 0 0 0 chr5 13856907 13856927 -138680332 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 690 1362 189 48 116 chr5 13856927 13857000 -138680259 + RMER19B LTR ERVK 767 846 -56 4 690 2728 80 90 0 chr5 13857000 13857377 -138679882 + IAPLTR2a LTR ERVK 1 411 0 5 690 963 121 25 99 chr5 13857378 13857580 -138679679 + IAPEz-int LTR ERVK 9 195 -6286 5 690 250 302 0 0 chr5 13857580 13857633 -138679626 + RLTR27 LTR ERVK 223 275 -34 5 690 3959 57 2 18 chr5 13857633 13858136 -138679123 + IAPEz-int LTR ERVK 168 662 -5819 5 690 2181 79 0 0 chr5 13858136 13858414 -138678845 + IAPEz-int LTR ERVK 1359 1636 -4845 5 690 6204 42 4 12 chr5 13858413 13859163 -138678096 + IAPEz-int LTR ERVK 5736 6479 -2 5 690 2721 82 90 0 chr5 13859166 13859543 -138677716 + IAPLTR2a LTR ERVK 1 411 0 5 690 2967 47 0 3 chr5 13859784 13860122 -138677137 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 690 9637 23 3 0 chr5 13860122 13861201 -138676058 - IAPEz-int LTR ERVK 0 6481 5400 5 690 21172 34 48 14 chr5 13861176 13863756 -138673503 - IAPEz-int LTR ERVK -3807 2674 8 5 690 2967 47 0 3 chr5 13863756 13864094 -138673165 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 690 1650 184 34 3 chr5 13864199 13864521 -138672738 + Lx4A LINE L1 6705 7036 -22 5 690 1200 66 0 0 chr5 13864521 13864658 -138672601 + B1_Mus1 SINE Alu 1 137 -11 5 690 38725 32 0 1 chr5 13864945 13871780 -138665479 - L1Md_T LINE L1 -12 6573 1 5 690 431 292 119 42 chr5 13871782 13872211 -138665048 - L1_Mur2 LINE L1 -526 5765 5311 5 690 532 233 34 14 chr5 13872301 13872449 -138664810 + URR1A DNA MER1_type 70 220 -6 5 690 229 274 42 50 chr5 13872458 13872577 -138664682 - L1_Mur2 LINE L1 -649 5228 5079 5 690 204 200 0 0 chr5 13872691 13872726 -138664533 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 690 724 252 89 19 chr5 13872969 13873183 -138664076 + MTC LTR MaLR 23 251 -170 5 690 3645 241 22 52 chr5 13873183 13874203 -138663056 + MERVL_2A-int LTR ERVL 1638 2627 -3134 5 690 11329 197 78 26 chr5 13874203 13874529 -138662730 - L1_Mur2 LINE L1 -937 4940 4622 5 690 213 39 0 0 chr5 13874529 13874555 -138662704 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 690 11329 197 78 26 chr5 13874555 13876937 -138660322 - L1_Mur2 LINE L1 -1256 4621 2065 5 690 444 111 0 0 chr5 13876937 13877009 -138660250 + (TGG)n Simple_repeat Simple_repeat 3 74 0 5 690 11329 197 78 26 chr5 13877009 13877166 -138660093 - L1_Mur2 LINE L1 -3813 2064 1926 5 690 6619 56 14 7 chr5 13878295 13879160 -138658099 + RLTR13D5 LTR ERVK 1 871 -152 5 690 2110 215 85 80 chr5 13880346 13880461 -138656798 + RMER19B LTR ERVK 270 417 -485 5 690 3144 52 8 40 chr5 13880461 13880863 -138656396 + RLTR10 LTR ERVK 1 389 -1 5 690 2110 215 85 80 chr5 13880863 13881218 -138656041 + RMER19B LTR ERVK 418 763 -139 5 690 2567 192 4 19 chr5 13881218 13881701 -138655558 + Lx3B LINE L1 6490 6965 -8 5 690 2110 215 85 80 chr5 13881701 13881841 -138655418 + RMER19B LTR ERVK 764 884 -18 5 690 1179 235 42 78 chr5 13882199 13882559 -138654700 + ORR1B1 LTR MaLR 47 393 -1 5 690 2371 209 25 12 chr5 13882564 13883073 -138654186 + Lx4A LINE L1 6543 7058 0 5 690 245 260 35 67 chr5 13883261 13883462 -138653797 - L1_Mur3 LINE L1 -761 5423 5225 5 690 495 293 0 7 chr5 13883504 13883645 -138653614 + URR1B DNA MER1_type 86 225 0 5 690 832 202 137 3 chr5 13883724 13884016 -138653243 + MERVL_2A-int LTR ERVL 2042 2372 -3389 5 690 14436 20 0 0 chr5 13884024 13885666 -138651593 + L1Md_T LINE L1 3945 5586 -297 5 690 9510 7 0 4 chr5 13885666 13886666 -138650593 + L1Md_T LINE L1 5587 6582 0 5 690 2320 217 74 0 chr5 13886677 13887180 -138650079 + MERVL_2A-int LTR ERVL 2382 2921 -2840 5 690 2567 100 5 99 chr5 13887181 13887614 -138649645 + MTB LTR MaLR 1 392 -8 5 690 6765 222 52 22 chr5 13887615 13890023 -138647236 + MERVL_2A-int LTR ERVL 2933 5460 -301 5 690 377 198 104 0 chr5 13890064 13890160 -138647099 + MERVL_2A-int LTR ERVL 5535 5640 -121 5 690 216 0 0 0 chr5 13890233 13890257 -138647002 + (T)n Simple_repeat Simple_repeat 1 24 0 5 690 3254 43 5 0 chr5 13890439 13890833 -138646426 - MTA_Mm LTR MaLR 0 396 1 5 690 270 202 124 31 chr5 13891230 13891327 -138645932 + MERVL-int LTR ERVL 5379 5484 -1 5 690 767 237 6 0 chr5 13891330 13891486 -138645773 + MT2B LTR ERVL 3 159 -442 5 690 2220 212 32 30 chr5 13891492 13892052 -138645207 + RLTR31_Mm LTR ERVK 1 561 0 5 690 2040 188 70 16 chr5 13892052 13892479 -138644780 + RLTR19-int LTR ERVK 3932 4381 -1756 5 690 25 0 0 0 chr5 13892756 13892781 -138644478 + AT_rich Low_complexity Low_complexity 1 25 0 5 86 2292 240 82 17 chr5 13893193 13893828 -138643431 + RLTR33 LTR ERVK 3 678 0 5 691 314 244 0 47 chr5 13893935 13894021 -138643238 - RMER6C LTR ERVK 0 690 609 5 691 10681 101 8 1 chr5 13894022 13896284 -138640975 - L1_Mus4 LINE L1 -12 6624 4347 5 691 407 209 88 0 chr5 13896328 13896419 -138640840 + ORR1D1 LTR MaLR 2 100 -274 5 691 2592 131 2 2 chr5 13896429 13896842 -138640417 + L1_Mm LINE L1 5093 5505 -378 5 691 300 253 11 84 chr5 13896842 13896937 -138640322 + ORR1D1 LTR MaLR 108 195 -189 5 691 908 214 22 57 chr5 13896959 13897187 -138640072 + ORR1D1 LTR MaLR 154 373 -1 5 691 405 0 0 0 chr5 13897389 13897434 -138639825 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 691 2047 182 18 10 chr5 13897929 13898312 -138638947 - ORR1B1 LTR MaLR -8 386 1 5 691 384 119 0 0 chr5 13898572 13898631 -138638628 + (TTTC)n Simple_repeat Simple_repeat 4 62 0 5 691 256 328 80 85 chr5 13898863 13899063 -138638196 + MLT1A1 LTR MaLR 2 200 -208 5 691 377 331 0 8 chr5 13899130 13899255 -138638004 - RCHARR1 DNA MER1_type -794 180 57 5 691 378 0 0 0 chr5 13899756 13899798 -138637461 + (T)n Simple_repeat Simple_repeat 1 42 0 5 691 394 236 160 16 chr5 13900864 13900989 -138636270 - RMER1C Other Other 0 1342 1200 5 691 413 279 114 8 chr5 13901147 13901270 -138635989 + RSINE1 SINE B4 4 139 -26 5 691 450 0 0 0 chr5 13901278 13901328 -138635931 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 691 315 0 0 0 chr5 13901328 13901363 -138635896 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 5 691 243 217 33 0 chr5 13901419 13901479 -138635780 + L1M2 LINE L1 5856 5917 -374 5 691 548 330 97 49 chr5 13902485 13902589 -138634670 + MLT1A LTR MaLR 5 112 -262 5 691 2240 155 11 0 chr5 13902589 13902951 -138634308 - ORR1B2 LTR MaLR -1 366 1 5 691 548 330 97 49 chr5 13902951 13903196 -138634063 + MLT1A LTR MaLR 113 371 -3 5 691 533 276 80 32 chr5 13903803 13903952 -138633307 + B3A SINE B2 3 165 -33 5 691 612 27 0 0 chr5 13903952 13904026 -138633233 + (GA)n Simple_repeat Simple_repeat 2 75 0 5 691 533 276 80 32 chr5 13904026 13904063 -138633196 + B3A SINE B2 166 198 0 5 691 206 156 22 0 chr5 13904169 13904214 -138633045 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 691 298 399 29 5 chr5 13904797 13905006 -138632253 + L2 LINE L2 698 911 -2508 5 691 2602 156 2 52 chr5 13905924 13906249 -138631010 + Lx5 LINE L1 5461 5780 -1270 5 691 2293 54 3 10 chr5 13906249 13906550 -138630709 - L1_Mus1 LINE L1 0 6567 6269 5 691 2967 202 70 55 chr5 13906550 13907741 -138629518 + Lx5 LINE L1 2701 3140 -774 5 691 525 16 0 0 chr5 13907758 13907820 -138629439 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 5 691 4323 50 2 4 chr5 13909970 13910511 -138626748 - L1Md_F2 LINE L1 0 6582 6043 5 691 189 321 116 30 chr5 13910548 13910712 -138626547 + MIRc SINE MIR 24 201 -67 5 691 212 196 18 18 chr5 13910854 13910911 -138626348 + A-rich Low_complexity Low_complexity 2 58 0 5 691 531 0 0 0 chr5 13912017 13912076 -138625183 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 691 1072 83 28 0 chr5 13914160 13914304 -138622955 + B1_Mus1 SINE Alu 1 148 0 5 691 1419 56 0 0 chr5 13914605 13914929 -138622330 + (CA)n Simple_repeat Simple_repeat 1 324 0 5 691 1149 61 0 7 chr5 13914930 13915078 -138622181 + B1_Mus2 SINE Alu 1 147 0 5 691 28 29 0 0 chr5 13915078 13915113 -138622146 + AT_rich Low_complexity Low_complexity 1 35 0 5 691 269 347 95 27 chr5 13915140 13915288 -138621971 - LTR53 LTR ERVL -10 509 352 5 691 242 138 269 30 chr5 13916201 13916268 -138620991 + RLTR14 LTR ERV1 1 83 -299 5 691 1564 259 22 25 chr5 13916247 13916611 -138620648 + RLTR14 LTR ERV1 17 379 -3 5 691 1129 269 43 40 chr5 13916623 13916774 -138620485 + RLTR14-int LTR ERV1 24 183 -5134 5 691 2918 76 18 5 chr5 13916774 13917169 -138620090 + MTB LTR MaLR 1 400 0 5 691 1129 269 43 40 chr5 13917169 13917389 -138619870 + RLTR14-int LTR ERV1 184 396 -4921 5 691 351 0 0 0 chr5 13917643 13917682 -138619577 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 691 511 144 42 132 chr5 13917813 13917957 -138619302 + RLTR14-int LTR ERV1 447 577 -4740 5 691 349 202 45 0 chr5 13917989 13918078 -138619181 + RLTR14-int LTR ERV1 826 918 -4399 5 691 225 0 0 0 chr5 13918292 13918317 -138618942 + (T)n Simple_repeat Simple_repeat 1 25 0 5 691 845 305 10 35 chr5 13918443 13918476 -138618783 + Lx2B LINE L1 6395 6420 -580 5 691 506 70 0 0 chr5 13918476 13918547 -138618712 - L1Md_F2 LINE L1 -10 6572 6502 5 691 2993 55 0 0 chr5 13918547 13918911 -138618348 + L1Md_F2 LINE L1 6080 6443 -139 5 691 23 78 0 0 chr5 13919131 13919182 -138618077 + AT_rich Low_complexity Low_complexity 1 51 0 5 691 504 309 49 53 chr5 13920051 13920335 -138616924 + RLTR14-int LTR ERV1 4027 4238 -3214 5 691 1382 200 33 7 chr5 13920754 13920827 -138616432 + RLTR14 LTR ERV1 104 176 -206 5 691 273 75 0 0 chr5 13920827 13920867 -138616392 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 691 1382 200 33 7 chr5 13920867 13921065 -138616194 + RLTR14 LTR ERV1 177 382 0 5 691 22 0 0 0 chr5 13922061 13922083 -138615176 + AT_rich Low_complexity Low_complexity 1 22 0 5 691 446 343 84 35 chr5 13922765 13922907 -138614352 - RSINE1 SINE B4 -2 163 15 5 691 27 0 0 0 chr5 13923459 13923486 -138613773 + AT_rich Low_complexity Low_complexity 1 27 0 5 691 213 313 0 0 chr5 13923611 13923678 -138613581 + (TA)n Simple_repeat Simple_repeat 1 67 0 5 691 236 398 25 0 chr5 13925134 13925252 -138612007 - MLT1A1 LTR MaLR -230 178 58 5 691 695 243 42 22 chr5 13925942 13926118 -138611141 + RLTR18B LTR ERVK 1 190 -322 5 691 327 325 0 0 chr5 13926208 13926291 -138610968 + RLTR18B LTR ERVK 122 204 -308 5 691 350 331 72 8 chr5 13926375 13926500 -138610759 + RLTR18B LTR ERVK 335 467 -45 5 691 1077 278 138 9 chr5 13926805 13927125 -138610134 - ORR1D2 LTR MaLR -2 368 8 5 691 257 61 0 20 chr5 13928491 13928541 -138608718 + B2_Mm2 SINE B2 143 191 -4 5 691 662 240 63 47 chr5 13928557 13928811 -138608448 - L1M1 LINE L1 -662 5638 5381 5 691 1162 135 5 31 chr5 13929165 13929356 -138607903 + B2_Mm2 SINE B2 2 187 -8 5 691 2412 184 70 57 chr5 13930738 13931371 -138605888 + RMER6A LTR ERVK 116 756 0 5 691 868 209 77 53 chr5 13931371 13931578 -138605681 + ORR1C2 LTR MaLR 173 384 0 5 691 382 385 53 5 chr5 13931844 13932050 -138605209 + MLT1C LTR MaLR 252 467 0 5 691 4803 138 46 10 chr5 13932244 13932641 -138604618 + Lx4A LINE L1 6248 6650 -408 5 691 2805 115 108 104 chr5 13932641 13933206 -138604053 + RMER2 LTR ERV1 1 567 0 5 691 4803 138 46 10 chr5 13933206 13933584 -138603675 + Lx4A LINE L1 6651 7051 -7 5 691 270 0 0 0 chr5 13934807 13934837 -138602422 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 691 24 32 0 0 chr5 13934886 13934917 -138602342 + AT_rich Low_complexity Low_complexity 1 31 0 5 691 32 43 0 0 chr5 13935234 13935280 -138601979 + AT_rich Low_complexity Low_complexity 1 46 0 5 691 216 0 0 0 chr5 13935378 13935402 -138601857 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 691 21 82 0 0 chr5 13935491 13935540 -138601719 + AT_rich Low_complexity Low_complexity 1 49 0 5 691 493 110 27 18 chr5 13937147 13937258 -138600001 + (CATATA)n Simple_repeat Simple_repeat 4 115 0 5 691 270 0 0 0 chr5 13937258 13937288 -138599971 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 691 486 0 0 0 chr5 13938921 13938975 -138598284 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 5 691 897 254 38 109 chr5 13939324 13939637 -138597622 - B4 SINE B4 0 292 2 5 691 506 308 99 44 chr5 13939815 13940087 -138597172 + RMER15 LTR ERVL 275 561 -14 5 691 447 227 130 68 chr5 13940093 13940254 -138597005 - MLT1A1 LTR MaLR -40 368 198 5 691 1597 247 63 3 chr5 13940351 13940717 -138596542 - MTD LTR MaLR -13 406 19 6 691 24 32 0 0 chr5 13940946 13940977 -138596282 + AT_rich Low_complexity Low_complexity 1 31 0 6 691 189 0 0 0 chr5 13941295 13941316 -138595943 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 6 691 294 325 39 32 chr5 13941757 13941913 -138595346 - RSINE1 SINE B4 -4 161 5 6 691 250 218 157 89 chr5 13942711 13942913 -138594346 - RMER17B LTR ERVK -42 818 559 6 691 195 114 0 0 chr5 13942918 13942953 -138594306 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 691 660 149 241 11 chr5 13942953 13943183 -138594076 - RMER17B LTR ERVK -661 297 1 6 691 288 0 0 0 chr5 13943385 13943417 -138593842 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 691 1164 116 6 11 chr5 13943417 13943591 -138593668 - B2_Mm2 SINE B2 -21 174 2 6 691 632 212 132 51 chr5 13943875 13944068 -138593191 - Lx7 LINE L1 0 7696 7476 6 691 324 0 0 0 chr5 13944068 13944104 -138593155 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 691 632 212 132 51 chr5 13944104 13944183 -138593076 - Lx7 LINE L1 -221 7475 7402 6 691 229 68 22 22 chr5 13944314 13944359 -138592900 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 6 691 293 0 27 0 chr5 13945058 13945095 -138592164 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 6 691 1162 54 0 0 chr5 13945098 13945245 -138592014 - B1_Mus1 SINE Alu 0 148 2 6 691 348 24 0 0 chr5 13945868 13945909 -138591350 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 691 198 0 0 0 chr5 13945909 13945930 -138591329 + (GA)n Simple_repeat Simple_repeat 1 22 0 6 691 1754 235 73 50 chr5 13945930 13946467 -138590792 - Lx9 LINE L1 -166 7478 6930 6 691 250 26 51 0 chr5 13946505 13946544 -138590715 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 691 4825 89 1 31 chr5 13947253 13947959 -138589300 - L1Md_F2 LINE L1 -11 6571 5887 6 691 1314 103 38 0 chr5 13948350 13948535 -138588724 - B2_Mm2 SINE B2 -3 192 1 6 691 397 260 245 40 chr5 13948578 13948778 -138588481 - RLTR14 LTR ERV1 -140 242 2 6 691 339 242 42 10 chr5 13949096 13949192 -138588067 + RSINE1 SINE B4 63 161 -4 6 691 235 384 11 23 chr5 13949324 13949412 -138587847 + MLT1J LTR MaLR 197 283 -229 6 691 312 327 112 0 chr5 13949935 13950042 -138587217 + B4A SINE B4 172 290 -2 6 691 863 152 11 11 chr5 13950125 13950305 -138586954 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 691 272 306 204 33 chr5 13950787 13950939 -138586320 - L3b LINE CR1 -214 268 91 6 691 291 302 93 10 chr5 13952109 13952206 -138585053 - B1F SINE Alu -44 105 1 6 691 406 322 50 67 chr5 13952496 13952890 -138584369 - RLTR16 LTR ERVK -237 455 31 6 691 714 199 90 0 chr5 13953048 13953249 -138584010 - Lx9 LINE L1 -1 7643 7425 6 691 2415 65 16 0 chr5 13953535 13953857 -138583402 - L1_Mus1 LINE L1 0 6567 6241 6 691 5107 67 4 3 chr5 13953857 13954730 -138582529 + L1_Mus1 LINE L1 5360 6234 -333 6 691 420 0 50 0 chr5 13955004 13955064 -138582195 + (GTTTG)n Simple_repeat Simple_repeat 3 65 0 6 691 972 119 0 27 chr5 13955067 13955214 -138582045 - B1_Mus1 SINE Alu -5 143 1 6 691 695 137 0 0 chr5 13955293 13955395 -138581864 - B3 SINE B2 -95 121 20 6 691 537 99 0 0 chr5 13956166 13956247 -138581012 + (CA)n Simple_repeat Simple_repeat 1 81 0 6 691 454 257 0 22 chr5 13956951 13957090 -138580169 + Lx9 LINE L1 7296 7431 -213 6 691 259 299 0 22 chr5 13957125 13957214 -138580045 + RMER12 LTR ERVK 747 833 -489 6 691 432 151 21 41 chr5 13957218 13957315 -138579944 + Lx9 LINE L1 7519 7613 -31 6 691 35 71 0 0 chr5 13957366 13957436 -138579823 + AT_rich Low_complexity Low_complexity 1 70 0 6 691 920 79 1 23 chr5 13957452 13957588 -138579671 + B1_Mus2 SINE Alu 16 147 0 6 691 247 298 113 36 chr5 13957463 13957710 -138579549 - YREP_Mm Unknown Unknown -1521 291 26 6 691 405 81 0 0 chr5 13958333 13958395 -138578864 + (TTGG)n Simple_repeat Simple_repeat 2 63 0 6 691 202 29 57 0 chr5 13958444 13958479 -138578780 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 6 691 4934 58 5 2 chr5 13958563 13959189 -138578070 + L1Md_F2 LINE L1 5954 6581 -1 6 691 26 30 0 0 chr5 13959191 13959224 -138578035 + AT_rich Low_complexity Low_complexity 1 33 0 6 691 1632 238 66 1 chr5 13960137 13960570 -138576689 - Lx7 LINE L1 -592 6868 6367 6 691 206 294 0 29 chr5 13960575 13960645 -138576614 + T-rich Low_complexity Low_complexity 2 69 0 6 691 285 273 250 10 chr5 13962257 13962357 -138574902 + RSINE1 SINE B4 25 148 -17 6 691 246 62 0 0 chr5 13962359 13962391 -138574868 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 691 8079 55 1 1 chr5 13962595 13963717 -138573542 + L1_Mus1 LINE L1 5443 6567 0 6 691 390 195 0 0 chr5 13963724 13963806 -138573453 + GA-rich Low_complexity Low_complexity 5 86 0 6 691 1092 119 0 0 chr5 13963810 13963978 -138573281 + (GAA)n Simple_repeat Simple_repeat 1 168 0 6 691 275 239 14 27 chr5 13963988 13964061 -138573198 + ID4_ SINE ID 1 72 -11 6 691 1529 37 0 21 chr5 13964566 13964757 -138572502 - B2_Mm1a SINE B2 -5 188 2 6 691 268 321 73 26 chr5 13966462 13966654 -138570605 - MER113A DNA MER1_type -93 221 21 6 691 21 0 0 0 chr5 13967073 13967094 -138570165 + AT_rich Low_complexity Low_complexity 1 21 0 6 691 228 245 0 0 chr5 13967916 13967965 -138569294 + L1MB8 LINE L1 6110 6158 -20 6 691 357 304 120 17 chr5 13968325 13968528 -138568731 + MER57C2 LTR ERV1 8 239 -172 6 691 369 0 0 0 chr5 13968728 13968769 -138568490 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 691 1302 104 27 0 chr5 13969123 13969306 -138567953 + B2_Mm2 SINE B2 1 188 -7 6 691 1113 82 0 7 chr5 13969626 13969774 -138567485 + B1_Mm SINE Alu 1 147 0 6 691 198 0 0 0 chr5 13970207 13970229 -138567030 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6 691 788 230 97 38 chr5 13971611 13972046 -138565213 - RMER2 LTR ERV1 -4 563 1 6 691 234 0 0 0 chr5 13972559 13972585 -138564674 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 691 1672 167 14 3 chr5 13972798 13973086 -138564173 + Lx4B LINE L1 6753 7043 -15 6 691 261 0 0 0 chr5 13973088 13973117 -138564142 + (TTAA)n Simple_repeat Simple_repeat 1 29 0 6 691 39 50 0 0 chr5 13973247 13973307 -138563952 + AT_rich Low_complexity Low_complexity 1 60 0 6 691 1182 43 0 0 chr5 13973307 13973447 -138563812 + B1_Mus1 SINE Alu 1 140 -8 6 691 288 198 69 0 chr5 13973467 13973583 -138563676 + (TA)n Simple_repeat Simple_repeat 2 125 0 6 691 21 36 0 0 chr5 13974285 13974313 -138562946 + AT_rich Low_complexity Low_complexity 1 28 0 6 691 1137 41 7 20 chr5 13975444 13975593 -138561666 - B1_Mm SINE Alu 0 147 1 6 691 553 277 57 38 chr5 13975672 13975882 -138561377 - B3 SINE B2 -2 214 1 6 691 604 286 56 56 chr5 13976070 13976444 -138560815 + L1MB8 LINE L1 5567 5940 -238 6 691 508 323 6 12 chr5 13976513 13976673 -138560586 + RSINE1 SINE B4 3 161 -4 6 691 1625 194 10 134 chr5 13976872 13977276 -138559983 - ORR1B1 LTR MaLR 0 394 41 6 691 207 69 0 0 chr5 13978469 13978498 -138558761 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 691 345 47 0 0 chr5 13978714 13978757 -138558502 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 691 580 293 56 20 chr5 13979785 13979980 -138557279 + B3 SINE B2 9 210 -6 6 691 1041 117 0 0 chr5 13980018 13980163 -138557096 + B1_Mus1 SINE Alu 2 146 -2 6 691 207 0 0 0 chr5 13980164 13980187 -138557072 + (A)n Simple_repeat Simple_repeat 1 23 0 6 691 273 341 27 92 chr5 13980464 13980648 -138556611 + B4A SINE B4 1 172 -120 6 691 357 24 0 0 chr5 13980709 13980751 -138556508 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 691 188 301 11 57 chr5 13980783 13980840 -138556419 - L2a LINE L2 -35 3391 3338 6 691 261 0 0 0 chr5 13980840 13980869 -138556390 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 691 188 301 11 57 chr5 13980869 13980899 -138556360 - L2a LINE L2 -89 3337 3308 6 691 1066 82 7 0 chr5 13980965 13981111 -138556148 + B1_Mm SINE Alu 1 147 0 6 691 240 111 0 0 chr5 13983373 13983418 -138553841 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 6 691 439 344 38 0 chr5 13984546 13984677 -138552582 - RSINE1 SINE B4 -24 141 6 6 691 1357 72 11 0 chr5 13986203 13986384 -138550875 - B2_Mm1t SINE B2 -9 184 2 6 691 1153 82 0 0 chr5 13986434 13986581 -138550678 + B1_Mus2 SINE Alu 1 147 0 6 691 25 65 0 0 chr5 13986978 13987024 -138550235 + AT_rich Low_complexity Low_complexity 1 46 0 6 691 255 340 86 6 chr5 13987210 13987373 -138549886 + MER54A LTR ERVL 89 264 -637 6 691 1790 303 29 2 chr5 13987389 13987879 -138549380 + MER54A LTR ERVL 396 898 -3 6 691 507 177 0 286 chr5 13989779 13989985 -138547274 + B1_Mur3 SINE Alu 2 148 -1 6 691 31 0 0 0 chr5 13990256 13990287 -138546972 + AT_rich Low_complexity Low_complexity 1 31 0 6 691 615 204 212 33 chr5 13990289 13990526 -138546733 - ORR1D2 LTR MaLR -57 313 1 6 691 226 258 106 0 chr5 13990527 13990593 -138546666 - ORR1D2-int LTR MaLR -1 1369 1297 6 691 7908 65 11 0 chr5 13990683 13992066 -138545193 - L1_Mus1 LINE L1 0 6567 5175 6 691 233 303 16 47 chr5 13992064 13992192 -138545067 - L1MB1 LINE L1 -187 5981 5858 6 691 194 0 39 0 chr5 13992240 13992266 -138544993 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 6 691 1111 88 0 0 chr5 13992266 13992413 -138544846 - B1_Mus1 SINE Alu 0 148 2 6 691 857 200 10 31 chr5 13992506 13992702 -138544557 - RMER17C LTR ERVK 0 410 219 6 691 312 85 0 0 chr5 13992678 13992725 -138544534 + B1_Mm SINE Alu 101 147 0 6 691 289 267 27 0 chr5 13992760 13992835 -138544424 - MIR3 SINE MIR -50 158 82 6 691 275 291 93 127 chr5 13993973 13994176 -138543083 - B3 SINE B2 0 216 21 6 691 2733 57 3 8 chr5 13994176 13994533 -138542726 - MT2C_Mm LTR ERVL 0 475 121 6 691 1014 239 0 5 chr5 13994663 13994873 -138542386 - B3 SINE B2 -6 210 2 7 691 2169 144 41 15 chr5 13995620 13996009 -138541250 + RMER6A LTR ERVK 356 754 -2 7 691 25 0 0 0 chr5 13996694 13996719 -138540540 + AT_rich Low_complexity Low_complexity 1 25 0 7 691 22 0 0 0 chr5 13996799 13996821 -138540438 + AT_rich Low_complexity Low_complexity 1 22 0 7 691 24 53 0 0 chr5 13996951 13996989 -138540270 + AT_rich Low_complexity Low_complexity 1 38 0 7 691 30 77 0 0 chr5 13996999 13997064 -138540195 + AT_rich Low_complexity Low_complexity 1 65 0 7 691 2288 183 32 151 chr5 13997093 13997756 -138539503 + RMER4B LTR ERVK 2 585 0 7 691 613 257 123 44 chr5 13997874 13998102 -138539157 - MTEa LTR MaLR -49 330 85 7 691 261 0 0 0 chr5 13998106 13998135 -138539124 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 691 234 0 0 0 chr5 13998135 13998160 -138539099 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 691 204 143 40 20 chr5 13999137 13999187 -138538072 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 691 405 102 0 0 chr5 13999443 13999502 -138537757 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 691 35 71 0 0 chr5 13999696 13999766 -138537493 + AT_rich Low_complexity Low_complexity 1 70 0 7 691 357 360 104 47 chr5 14000038 14000335 -138536924 + L2 LINE L2 2469 2782 -637 1 691 225 65 0 0 chr5 14000574 14000605 -138536654 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2 691 448 305 0 9 chr5 14000608 14000714 -138536545 - ID_B1 SINE B4 -36 188 84 3 691 226 259 16 122 chr5 14000609 14000732 -138536527 - MT2B LTR ERVL -338 263 154 4 691 235 277 145 40 chr5 14002813 14002937 -138534322 - Lx9 LINE L1 -1655 5989 5853 5 691 465 228 231 87 chr5 14002884 14003230 -138534029 + Lx9 LINE L1 6401 6796 -848 6 691 239 272 42 32 chr5 14003485 14003580 -138533679 + Lx9 LINE L1 7084 7179 -465 6 691 280 243 74 139 chr5 14004006 14004250 -138533009 - RMER17C LTR ERVK -176 234 7 7 691 718 238 0 0 chr5 14004332 14004479 -138532780 - B1_Mus1 SINE Alu -1 147 1 8 691 771 11 0 0 chr5 14005172 14005260 -138531999 + (TTCCC)n Simple_repeat Simple_repeat 3 90 0 9 691 885 155 34 22 chr5 14005523 14005701 -138531558 - Lx7 LINE L1 0 7696 7517 1 691 2088 138 0 52 chr5 14005734 14006140 -138531119 - RMER10B LTR ERVL -13 385 1 1 691 617 117 9 18 chr5 14006185 14006298 -138530961 - Lx7 LINE L1 -203 7493 7382 1 691 300 53 0 0 chr5 14006300 14006338 -138530921 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 1 691 853 268 68 29 chr5 14006406 14006714 -138530545 - Lx7 LINE L1 -285 7411 7092 1 691 405 0 0 0 chr5 14006861 14006906 -138530353 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 691 297 0 0 0 chr5 14006906 14006938 -138530321 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 691 226 227 186 49 chr5 14007054 14007156 -138530103 + MER5A1 DNA MER1_type 30 145 -21 1 691 235 311 152 43 chr5 14007186 14007324 -138529935 - MER58B DNA MER1_type -3 338 186 1 691 1170 49 14 0 chr5 14007691 14007835 -138529424 + B1_Mus1 SINE Alu 3 148 0 1 691 243 88 0 0 chr5 14007835 14007869 -138529390 + (A)n Simple_repeat Simple_repeat 1 34 0 1 691 1501 174 28 22 chr5 14009075 14009399 -138527860 - Lx4B LINE L1 -4 7054 6729 2 691 1093 68 0 26 chr5 14009472 14009624 -138527635 - B1_Mus1 SINE Alu 0 148 1 2 691 358 319 80 141 chr5 14009958 14010048 -138527211 - Lx8 LINE L1 -26 7447 7330 2 691 482 31 16 0 chr5 14010048 14010112 -138527147 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 691 358 319 80 141 chr5 14010112 14010333 -138526926 - Lx8 LINE L1 -144 7329 7132 2 691 312 48 0 0 chr5 14010333 14010375 -138526884 + (TTG)n Simple_repeat Simple_repeat 2 43 0 2 691 1169 48 14 0 chr5 14010385 14010530 -138526729 - B1_Mus1 SINE Alu 0 148 2 2 691 1157 319 61 131 chr5 14010530 14010697 -138526562 - Lx8 LINE L1 -342 7131 7017 2 691 234 0 0 0 chr5 14010697 14010723 -138526536 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 691 1468 305 40 45 chr5 14010723 14011410 -138525849 - Lx8 LINE L1 -451 7022 6350 2 691 330 300 32 32 chr5 14011883 14011976 -138525283 + B3A SINE B2 1 93 -105 2 691 639 304 0 86 chr5 14012147 14012166 -138525093 - B3A SINE B2 -15 183 171 2 691 477 76 0 0 chr5 14012166 14012232 -138525027 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 691 639 304 0 86 chr5 14012232 14012410 -138524849 - B3A SINE B2 -28 170 3 2 691 26 0 0 0 chr5 14013505 14013531 -138523728 + AT_rich Low_complexity Low_complexity 1 26 0 3 691 226 333 112 71 chr5 14013594 14013791 -138523468 - L2 LINE L2 -359 3060 2856 3 691 452 310 45 36 chr5 14014031 14014252 -138523007 - MLT2F LTR ERVL -2 661 439 3 691 403 260 111 12 chr5 14014782 14014953 -138522306 + L1PB4 LINE L1 5679 5866 -290 3 691 799 120 47 23 chr5 14015066 14015194 -138522065 + B1_Mus1 SINE Alu 8 138 -10 3 691 428 0 19 0 chr5 14015195 14015247 -138522012 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 3 691 1265 118 16 0 chr5 14015654 14015840 -138521419 - B2_Mm2 SINE B2 -6 189 1 3 691 21 36 0 0 chr5 14015842 14015870 -138521389 + AT_rich Low_complexity Low_complexity 1 28 0 3 691 21 57 0 0 chr5 14015972 14016007 -138521252 + AT_rich Low_complexity Low_complexity 1 35 0 3 691 273 182 0 0 chr5 14016462 14016517 -138520742 + T-rich Low_complexity Low_complexity 2 56 0 3 691 1012 86 58 0 chr5 14016517 14016656 -138520603 - B1_Mus1 SINE Alu 0 148 2 4 691 993 94 0 0 chr5 14017749 14017887 -138519372 + B1_Mus1 SINE Alu 11 148 0 4 691 1289 187 15 8 chr5 14018264 14018523 -138518736 + Lx5 LINE L1 6747 7007 -43 4 691 270 0 0 0 chr5 14018543 14018573 -138518686 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 4 691 204 214 0 0 chr5 14019950 14020006 -138517253 + CT-rich Low_complexity Low_complexity 3 58 0 4 691 786 134 0 0 chr5 14020043 14020170 -138517089 + (TTCCC)n Simple_repeat Simple_repeat 4 130 0 4 691 1131 68 0 7 chr5 14020173 14020320 -138516939 - B1_Mm SINE Alu -1 146 1 4 691 246 329 45 89 chr5 14021320 14021477 -138515782 - MLT1J1 LTR MaLR -253 191 42 4 691 1420 82 0 15 chr5 14021534 14021731 -138515528 - B2_Mm2 SINE B2 -1 194 1 4 691 685 226 15 0 chr5 14022232 14022365 -138514894 + B1_Mur4 SINE Alu 2 136 -14 4 691 653 0 13 0 chr5 14022365 14022442 -138514817 + (GAA)n Simple_repeat Simple_repeat 2 79 0 5 691 3168 178 47 30 chr5 14022561 14023221 -138514038 + RMER6C LTR ERVK 20 690 0 5 691 21 0 0 0 chr5 14023681 14023702 -138513557 + AT_rich Low_complexity Low_complexity 1 21 0 5 692 361 299 31 7 chr5 14027538 14027688 -138509571 + Lx8 LINE L1 5781 5930 -370 5 692 312 91 0 0 chr5 14027872 14027916 -138509343 + (T)n Simple_repeat Simple_repeat 1 44 0 5 692 1175 48 0 20 chr5 14030268 14030417 -138506842 - B1_Mus1 SINE Alu 0 148 3 5 692 369 0 0 0 chr5 14032691 14032732 -138504527 + (T)n Simple_repeat Simple_repeat 1 41 0 5 692 928 136 7 7 chr5 14034121 14034269 -138502990 - B1_Mur3 SINE Alu -1 148 1 5 692 494 228 26 67 chr5 14034784 14034977 -138502282 + L1MC3 LINE L1 7584 7768 -17 5 692 180 97 0 0 chr5 14034981 14035012 -138502247 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 692 306 0 0 0 chr5 14035014 14035048 -138502211 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 692 300 53 0 0 chr5 14035528 14035566 -138501693 + (TATG)n Simple_repeat Simple_repeat 3 40 0 6 692 395 328 17 0 chr5 14035569 14035685 -138501574 - RSINE1 SINE B4 -7 158 41 6 692 1197 47 0 7 chr5 14036230 14036379 -138500880 + B1_Mus1 SINE Alu 1 148 0 6 692 853 163 86 11 chr5 14036398 14036572 -138500687 + B2_Mm2 SINE B2 8 194 -1 6 692 207 0 0 0 chr5 14036647 14036670 -138500589 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 692 1145 54 0 13 chr5 14036678 14036827 -138500432 - B1_Mus1 SINE Alu 0 148 2 6 692 26 0 0 0 chr5 14037163 14037189 -138500070 + AT_rich Low_complexity Low_complexity 1 26 0 6 692 513 47 0 0 chr5 14037428 14037492 -138499767 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 692 544 327 21 83 chr5 14037493 14037733 -138499526 - B4 SINE B4 -4 288 64 6 692 260 170 0 21 chr5 14037722 14037770 -138499489 + B1_Mur1 SINE Alu 60 106 -43 7 692 432 0 0 0 chr5 14037772 14037820 -138499439 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 7 692 25 51 0 0 chr5 14038766 14038805 -138498454 + AT_rich Low_complexity Low_complexity 1 39 0 7 692 207 330 41 10 chr5 14039690 14039788 -138497471 + MIR SINE MIR 141 241 -21 7 692 257 282 0 27 chr5 14039803 14039876 -138497383 + GA-rich Low_complexity Low_complexity 4 74 0 7 692 183 80 0 0 chr5 14040008 14040033 -138497226 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 7 692 23 0 0 0 chr5 14041281 14041304 -138495955 + AT_rich Low_complexity Low_complexity 1 23 0 7 692 1304 98 16 0 chr5 14041628 14041812 -138495447 - B2_Mm2 SINE B2 -8 187 1 7 692 932 278 163 33 chr5 14042624 14043170 -138494089 - Lx7 LINE L1 -900 6744 6128 7 692 1713 262 40 24 chr5 14043253 14043869 -138493390 - Lx7 LINE L1 -1779 5917 5252 7 692 180 0 0 0 chr5 14044845 14044865 -138492394 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 692 1097 52 0 0 chr5 14044877 14045012 -138492247 - B1_Mus1 SINE Alu -13 135 1 8 692 1160 49 0 20 chr5 14045383 14045530 -138491729 + B1_Mus1 SINE Alu 5 148 0 8 692 21 36 0 0 chr5 14046211 14046239 -138491020 + AT_rich Low_complexity Low_complexity 1 28 0 8 692 1116 90 0 0 chr5 14046914 14047058 -138490201 + B1_Mus2 SINE Alu 4 147 0 8 692 584 248 194 16 chr5 14047112 14047354 -138489905 + BGLII_B LTR ERVK 139 423 -18 8 692 205 376 36 29 chr5 14047371 14047508 -138489751 - L3b LINE CR1 -123 359 222 8 692 291 296 14 0 chr5 14048301 14048372 -138488887 + MLT1I LTR MaLR 71 142 -269 8 692 260 264 11 32 chr5 14049286 14049380 -138487879 + CT-rich Low_complexity Low_complexity 2 93 0 8 692 1022 65 51 0 chr5 14051321 14051459 -138485800 - B1_Mus1 SINE Alu -1 147 3 8 692 192 152 0 0 chr5 14051547 14051580 -138485679 + CT-rich Low_complexity Low_complexity 4 36 0 8 692 26 0 0 0 chr5 14051652 14051678 -138485581 + AT_rich Low_complexity Low_complexity 1 26 0 9 692 1379 62 23 0 chr5 14051688 14051865 -138485394 - B2_Mm2 SINE B2 -13 182 2 9 692 738 224 0 0 chr5 14052213 14052356 -138484903 + B1_Mus1 SINE Alu 1 143 -5 9 692 283 274 0 0 chr5 14052371 14052444 -138484815 + A-rich Low_complexity Low_complexity 1 73 0 9 692 24 0 0 0 chr5 14052580 14052604 -138484655 + AT_rich Low_complexity Low_complexity 1 24 0 9 692 22 35 0 0 chr5 14052786 14052815 -138484444 + AT_rich Low_complexity Low_complexity 1 29 0 9 692 961 157 7 0 chr5 14052856 14053003 -138484256 + B1_Mur3 SINE Alu 2 149 0 9 692 210 167 0 0 chr5 14053148 14053184 -138484075 + A-rich Low_complexity Low_complexity 1 36 0 9 692 817 226 60 10 chr5 14054302 14054503 -138482756 - B3 SINE B2 -5 211 1 9 692 727 224 0 7 chr5 14055001 14055136 -138482123 - B1_Mur1 SINE Alu -3 146 13 9 692 270 0 0 0 chr5 14055137 14055167 -138482092 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 692 449 342 32 6 chr5 14055345 14055501 -138481758 + B3A SINE B2 1 160 -38 1 692 450 0 0 0 chr5 14055504 14055554 -138481705 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 692 21 36 0 0 chr5 14055554 14055582 -138481677 + AT_rich Low_complexity Low_complexity 1 28 0 1 692 548 176 13 69 chr5 14056270 14056429 -138480830 + Lx9 LINE L1 7488 7637 -7 1 692 705 149 32 24 chr5 14058470 14058594 -138478665 - B1_Mur2 SINE Alu 0 149 25 1 692 232 244 95 95 chr5 14058515 14058610 -138478649 - MT2B LTR ERVL -343 258 164 1 692 374 317 152 0 chr5 14059266 14059496 -138477763 + L1MC4 LINE L1 6666 6930 -1112 1 692 335 310 0 12 chr5 14060987 14061072 -138476187 + C-rich Low_complexity Low_complexity 3 86 0 1 692 311 356 99 27 chr5 14062000 14062222 -138475037 - B4A SINE B4 -52 240 3 1 692 1153 54 7 0 chr5 14062343 14062490 -138474769 - B1_Mus1 SINE Alu 0 148 1 1 692 293 302 31 0 chr5 14063090 14063186 -138474073 - MLT1L LTR MaLR -378 232 134 1 692 374 294 18 0 chr5 14063848 14063957 -138473302 + MER33 DNA MER1_type 1 111 -213 1 692 1176 128 113 0 chr5 14064135 14064338 -138472921 - URR1A DNA MER1_type 0 226 1 1 692 1557 237 87 5 chr5 14065390 14065771 -138471488 - MTD LTR MaLR 0 419 8 1 692 33 56 0 0 chr5 14065819 14065873 -138471386 + AT_rich Low_complexity Low_complexity 1 54 0 1 692 697 246 70 25 chr5 14066098 14066298 -138470961 - B3 SINE B2 0 216 8 1 692 201 271 14 0 chr5 14066409 14066479 -138470780 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 692 243 0 0 0 chr5 14067344 14067371 -138469888 + (T)n Simple_repeat Simple_repeat 1 27 0 1 692 1803 199 97 40 chr5 14067371 14067795 -138469464 - RMER16 LTR ERVK -85 448 1 1 692 515 117 0 0 chr5 14067795 14067872 -138469387 - RMER16-int LTR ERVK 0 5406 5330 1 692 22 0 0 0 chr5 14068346 14068368 -138468891 + AT_rich Low_complexity Low_complexity 1 22 0 1 692 5088 7 0 0 chr5 14069274 14069840 -138467419 + L1Md_T LINE L1 6017 6582 0 1 692 4024 167 34 17 chr5 14071070 14071855 -138465404 + L1_Mur3 LINE L1 4172 4970 -910 1 692 864 246 29 0 chr5 14071865 14072105 -138465154 - L1_Mur3 LINE L1 -6625 1087 841 1 692 431 350 81 16 chr5 14072154 14072674 -138464585 - L1_Mur3 LINE L1 -7178 534 81 1 692 1478 68 0 10 chr5 14072693 14072885 -138464374 - B2_Mm1t SINE B2 -2 191 2 1 692 2329 127 68 2 chr5 14073959 14074355 -138462904 - BGLII_Mus LTR ERVK 0 422 1 1 692 212 0 36 0 chr5 14074371 14074399 -138462860 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 692 27 29 0 0 chr5 14075347 14075381 -138461878 + AT_rich Low_complexity Low_complexity 1 34 0 1 692 360 274 18 28 chr5 14076242 14076351 -138460908 - B1F SINE Alu 0 149 42 1 692 821 200 200 0 chr5 14076912 14077087 -138460172 - B3 SINE B2 -2 214 5 1 692 22 0 0 0 chr5 14077221 14077243 -138460016 + AT_rich Low_complexity Low_complexity 1 22 0 1 692 1070 86 0 0 chr5 14078762 14078901 -138458358 - B1_Mus1 SINE Alu -9 139 1 1 692 653 330 19 36 chr5 14079073 14079435 -138457824 - MLT1A1 LTR MaLR -4 404 8 1 692 833 231 64 25 chr5 14079676 14079880 -138457379 + B3 SINE B2 1 212 -4 1 692 518 301 0 0 chr5 14080328 14080464 -138456795 + B1_Mur1 SINE Alu 5 140 -9 1 692 437 184 71 0 chr5 14080495 14080593 -138456666 - Lx9 LINE L1 -227 7417 7313 1 692 372 43 0 0 chr5 14080595 14080641 -138456618 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 692 284 196 97 61 chr5 14080643 14080757 -138456502 + Lx9 LINE L1 7521 7638 -6 1 692 4822 132 109 20 chr5 14080898 14081778 -138455481 - RMER17B LTR ERVK 0 958 1 1 692 531 45 0 0 chr5 14081969 14082035 -138455224 + (ATG)n Simple_repeat Simple_repeat 2 67 0 1 692 856 172 23 19 chr5 14082235 14082419 -138454840 - B2_Mm2 SINE B2 -2 191 1 1 692 22 0 0 0 chr5 14082681 14082703 -138454556 + AT_rich Low_complexity Low_complexity 1 22 0 1 692 230 224 45 45 chr5 14083291 14083380 -138453879 - L1M1 LINE L1 -371 5932 5844 1 692 284 0 28 0 chr5 14084207 14084243 -138453016 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 1 692 1191 61 0 0 chr5 14084243 14084390 -138452869 - B1_Mus1 SINE Alu 0 148 2 1 692 192 125 0 0 chr5 14084755 14084787 -138452472 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 692 309 345 92 0 chr5 14084808 14084927 -138452332 - B1F SINE Alu -19 130 1 1 692 441 350 97 39 chr5 14084928 14085309 -138451950 - L1M5 LINE L1 -573 5667 5265 1 692 240 349 63 104 chr5 14087429 14087650 -138449609 + MamGypLTR1b LTR Gypsy 421 632 -150 1 692 796 287 16 26 chr5 14089420 14089613 -138447646 + B3 SINE B2 1 191 -25 1 692 30 0 0 0 chr5 14089617 14089647 -138447612 + AT_rich Low_complexity Low_complexity 1 30 0 1 692 381 333 80 7 chr5 14091301 14091452 -138445807 - RSINE1 SINE B4 -2 163 2 1 692 280 250 9 115 chr5 14091927 14092040 -138445219 + PB1D10 SINE Alu 5 105 -12 1 692 206 340 29 20 chr5 14093474 14093576 -138443683 + MER5A DNA MER1_type 36 138 -51 1 692 261 0 0 0 chr5 14094199 14094228 -138443031 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 1 692 459 320 26 0 chr5 14094234 14094390 -138442869 - RSINE1 SINE B4 -2 163 4 1 692 219 273 17 52 chr5 14094704 14094762 -138442497 - RSINE1 SINE B4 -105 60 5 1 692 427 274 94 0 chr5 14094823 14094940 -138442319 - B1_Mur1 SINE Alu -1 148 21 1 692 231 357 139 28 chr5 14094830 14094974 -138442285 - B4 SINE B4 -74 218 59 1 692 21 36 0 0 chr5 14095350 14095378 -138441881 + AT_rich Low_complexity Low_complexity 1 28 0 1 692 235 232 116 0 chr5 14095588 14095657 -138441602 + L1M LINE L1 5334 5410 -773 1 692 878 224 19 47 chr5 14095850 14096065 -138441194 - URR1B DNA MER1_type 0 225 17 1 692 3354 264 77 30 chr5 14096080 14097451 -138439808 - Lx9 LINE L1 -1686 5958 4490 1 692 21 0 0 0 chr5 14097767 14097788 -138439471 + AT_rich Low_complexity Low_complexity 1 21 0 1 692 1554 69 0 0 chr5 14099188 14099392 -138437867 - L1Md_T LINE L1 0 6582 6379 1 692 342 0 0 0 chr5 14099606 14099644 -138437615 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 692 360 0 0 0 chr5 14099644 14099683 -138437576 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 692 556 70 23 0 chr5 14099729 14099815 -138437444 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 692 424 303 174 44 chr5 14100444 14100692 -138436567 - B4 SINE B4 -2 290 11 1 692 225 0 0 0 chr5 14102141 14102166 -138435093 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 692 29 0 0 0 chr5 14103006 14103035 -138434224 + AT_rich Low_complexity Low_complexity 1 29 0 1 692 1556 222 44 107 chr5 14103253 14103711 -138433548 - Lx5 LINE L1 -1 7049 6621 1 692 227 86 0 0 chr5 14103848 14103883 -138433376 - RMER19C LTR ERVK 0 611 577 1 692 487 314 127 48 chr5 14104189 14104480 -138432779 - LTR16A LTR ERVL -91 360 47 1 692 28 29 0 0 chr5 14107863 14107898 -138429361 + AT_rich Low_complexity Low_complexity 1 35 0 1 692 236 286 47 12 chr5 14108437 14108522 -138428737 - MLT1D LTR MaLR -105 400 313 1 692 499 194 31 0 chr5 14112055 14112153 -138425106 - B1_Mur3 SINE Alu 0 149 49 1 692 296 264 143 12 chr5 14112361 14112522 -138424737 - Lx8 LINE L1 -3 7470 7289 1 692 1642 244 106 58 chr5 14113834 14114373 -138422886 - RLTR20B3 LTR ERVK -7 570 6 1 692 221 196 0 18 chr5 14114538 14114595 -138422664 + CT-rich Low_complexity Low_complexity 3 58 0 1 692 516 317 148 16 chr5 14114691 14115008 -138422251 + MLT1A LTR MaLR 6 364 -10 1 692 1381 289 32 64 chr5 14116486 14116985 -138420274 + RMER15 LTR ERVL 3 485 -90 1 692 1784 137 17 7 chr5 14116985 14117279 -138419980 - ORR1A4 LTR MaLR 0 329 33 1 692 21 57 0 0 chr5 14117529 14117564 -138419695 + AT_rich Low_complexity Low_complexity 1 35 0 1 692 1541 167 66 30 chr5 14119657 14120053 -138417206 + RMER17C LTR ERVK 1 410 0 1 692 203 246 18 0 chr5 14120444 14120501 -138416758 + GA-rich Low_complexity Low_complexity 1 58 0 1 692 237 98 0 0 chr5 14120633 14120674 -138416585 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 1 692 420 71 0 0 chr5 14121080 14121136 -138416123 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 1 692 1597 244 76 17 chr5 14123071 14123161 -138414098 - RLTR16 LTR ERVK -1 504 415 1 692 360 0 0 0 chr5 14123161 14123201 -138414058 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 692 1597 244 76 17 chr5 14123201 14123581 -138413678 - RLTR16 LTR ERVK -91 414 8 1 692 1241 259 105 10 chr5 14123734 14124218 -138413041 + Lx9 LINE L1 7047 7576 -68 1 692 242 302 11 95 chr5 14124790 14124885 -138412374 - MTE2a LTR MaLR -15 364 278 1 692 432 0 0 0 chr5 14127511 14127559 -138409700 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 692 225 0 0 0 chr5 14129474 14129499 -138407760 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 692 248 238 47 70 chr5 14130450 14130536 -138406723 - RSINE1 SINE B4 0 165 82 1 692 259 232 18 0 chr5 14130664 14130720 -138406539 - RSINE1 SINE B4 -105 60 4 1 692 421 299 7 76 chr5 14131102 14131247 -138406012 + B1F1 SINE Alu 15 149 0 1 692 306 0 0 0 chr5 14132932 14132966 -138404293 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 692 186 43 0 0 chr5 14133317 14133340 -138403919 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1 692 515 252 27 0 chr5 14133342 14133453 -138403806 - B1_Mur4 SINE Alu -36 114 1 1 692 639 300 95 37 chr5 14134133 14134587 -138402672 - L1MA5 LINE L1 -369 5931 5452 1 692 21 0 0 0 chr5 14135218 14135239 -138402020 + AT_rich Low_complexity Low_complexity 1 21 0 2 692 25 0 0 0 chr5 14135738 14135763 -138401496 + AT_rich Low_complexity Low_complexity 1 25 0 2 692 570 249 27 53 chr5 14136860 14137047 -138400212 - B2_Mm2 SINE B2 -9 186 5 2 692 813 200 200 0 chr5 14137073 14137253 -138400006 - B3 SINE B2 0 216 1 2 692 228 167 0 0 chr5 14137261 14137309 -138399950 + T-rich Low_complexity Low_complexity 1 48 0 2 692 1128 75 0 0 chr5 14137310 14137457 -138399802 - B1_Mus2 SINE Alu 0 147 1 2 692 336 250 104 0 chr5 14137654 14137798 -138399461 - Lx9 LINE L1 -16 7628 7470 2 692 477 0 0 0 chr5 14137951 14138004 -138399255 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 692 357 24 0 0 chr5 14138004 14138045 -138399214 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 692 276 312 20 68 chr5 14138667 14138815 -138398444 + L4 LINE RTE 782 922 -1107 2 692 486 0 0 0 chr5 14139152 14139206 -138398053 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 692 23 0 0 0 chr5 14139878 14139901 -138397358 + AT_rich Low_complexity Low_complexity 1 23 0 2 692 26 0 0 0 chr5 14140389 14140415 -138396844 + AT_rich Low_complexity Low_complexity 1 26 0 2 692 29 60 0 0 chr5 14140602 14140652 -138396607 + AT_rich Low_complexity Low_complexity 1 50 0 2 692 1587 27 27 0 chr5 14140951 14141139 -138396120 + B2_Mm1t SINE B2 1 193 0 2 692 308 235 40 15 chr5 14142518 14142614 -138394645 - PB1D10 SINE Alu 0 120 20 2 692 657 298 125 19 chr5 14143420 14143731 -138393528 + MER2 DNA MER2_type 2 345 0 2 692 261 0 0 0 chr5 14144418 14144447 -138392812 + (T)n Simple_repeat Simple_repeat 1 29 0 2 692 653 206 60 22 chr5 14144513 14144647 -138392612 + B1_Mus2 SINE Alu 9 147 0 2 692 553 61 40 10 chr5 14145764 14145864 -138391395 + (TA)n Simple_repeat Simple_repeat 2 104 0 2 692 600 84 0 0 chr5 14145974 14146057 -138391202 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 692 315 225 33 22 chr5 14146057 14146148 -138391111 - Lx9 LINE L1 -169 7475 7384 2 692 245 356 88 62 chr5 14146382 14146723 -138390536 + Lx8 LINE L1 7118 7467 -6 2 692 331 322 103 20 chr5 14146771 14146917 -138390342 + RSINE1 SINE B4 4 161 -4 2 692 2355 126 11 3 chr5 14146955 14147320 -138389939 - L1_Mus3 LINE L1 -6 6632 6265 2 692 7759 40 2 12 chr5 14148007 14148975 -138388284 - L1Md_F2 LINE L1 0 6582 5625 2 692 9133 78 0 0 chr5 14148967 14150202 -138387057 + L1_Mm LINE L1 1745 2979 -2904 2 692 599 325 23 11 chr5 14150574 14150748 -138386511 + ORR1D2 LTR MaLR 1 176 -194 2 692 327 193 0 0 chr5 14150751 14150834 -138386425 + CT-rich Low_complexity Low_complexity 2 84 0 2 692 323 197 30 0 chr5 14150889 14150955 -138386304 + ORR1D2 LTR MaLR 170 237 -133 2 692 918 152 141 0 chr5 14151258 14151456 -138385803 - URR1A DNA MER1_type 0 226 1 2 692 1463 73 0 5 chr5 14151750 14151943 -138385316 - B2_Mm2 SINE B2 -2 193 2 2 692 219 380 32 32 chr5 14151983 14152108 -138385151 + MIR SINE MIR 17 141 -67 2 692 275 0 0 28 chr5 14153040 14153076 -138384183 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2 692 416 324 120 52 chr5 14153094 14153420 -138383839 - L2 LINE L2 -2893 526 179 2 692 360 0 0 0 chr5 14153988 14154028 -138383231 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2 692 1226 190 198 22 chr5 14154190 14154508 -138382751 + ORR1D1 LTR MaLR 1 374 0 2 692 217 282 27 53 chr5 14154746 14154821 -138382438 - MER5B DNA MER1_type -9 169 97 2 692 222 37 0 0 chr5 14155407 14155434 -138381825 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2 693 183 152 33 33 chr5 14155822 14155883 -138381376 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 2 693 22 56 0 0 chr5 14156141 14156177 -138381082 + AT_rich Low_complexity Low_complexity 1 36 0 2 693 215 281 96 12 chr5 14156238 14156321 -138380938 + MIR SINE MIR 152 241 -21 2 693 186 309 60 36 chr5 14156620 14156704 -138380555 - MIRb SINE MIR -167 101 16 2 693 611 362 148 19 chr5 14159347 14159780 -138377479 - LTR40a LTR ERVL -9 510 22 2 693 194 0 39 0 chr5 14161645 14161671 -138375588 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 693 224 222 0 0 chr5 14164461 14164506 -138372753 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 693 180 152 0 0 chr5 14165002 14165035 -138372224 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 693 3426 23 5 0 chr5 14165719 14166113 -138371146 + MTA_Mm LTR MaLR 1 396 0 2 693 257 306 128 32 chr5 14166251 14166501 -138370758 - Lx7 LINE L1 -511 7185 6912 2 693 4679 63 0 40 chr5 14167227 14167916 -138369343 - L1Md_F2 LINE L1 0 6582 5948 2 693 1099 142 52 9 chr5 14168101 14168314 -138368945 - Lx LINE L1 -7 6647 6426 2 693 186 43 0 0 chr5 14168331 14168354 -138368905 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 2 693 515 287 62 0 chr5 14170254 14170383 -138366876 + B3 SINE B2 21 157 -59 2 693 470 316 175 24 chr5 14170403 14170740 -138366519 - MLT1E1A LTR MaLR -1 679 292 2 693 427 263 0 10 chr5 14171731 14171831 -138365428 - PB1D10 SINE Alu -1 116 18 2 693 21 0 0 0 chr5 14171960 14171981 -138365278 + AT_rich Low_complexity Low_complexity 1 21 0 2 693 21 71 0 0 chr5 14172230 14172272 -138364987 + AT_rich Low_complexity Low_complexity 1 42 0 2 693 1078 137 0 0 chr5 14172671 14172832 -138364427 + B2_Mm2 SINE B2 1 161 -34 2 693 344 22 0 22 chr5 14172832 14172878 -138364381 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 2 693 38007 30 0 1 chr5 14174099 14180595 -138356664 - L1Md_T LINE L1 0 6585 1 2 693 1965 124 13 10 chr5 14181064 14181364 -138355895 - Lx3B LINE L1 -6 6967 6667 2 693 21 71 0 0 chr5 14181490 14181532 -138355727 + AT_rich Low_complexity Low_complexity 1 42 0 2 693 323 322 104 84 chr5 14181723 14182222 -138355037 - L1ME3A LINE L1 -77 6096 5588 2 693 226 219 107 27 chr5 14182341 14182416 -138354843 - L1ME3A LINE L1 -708 5465 5385 2 693 458 33 17 0 chr5 14182837 14182897 -138354362 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 693 257 304 70 63 chr5 14184664 14184822 -138352437 + MIRb SINE MIR 50 208 -60 2 693 549 0 0 0 chr5 14184926 14184987 -138352272 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 2 693 688 306 104 12 chr5 14184987 14185238 -138352021 + B4A SINE B4 1 274 -18 2 693 264 30 0 0 chr5 14185239 14185272 -138351987 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 693 563 50 100 0 chr5 14185298 14185378 -138351881 + RLTR13B2 LTR ERVK 1 88 -734 2 693 2449 315 80 18 chr5 14185574 14186572 -138350687 - Lx8 LINE L1 -224 7249 6190 2 693 498 33 0 0 chr5 14186573 14186633 -138350626 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 693 264 77 0 0 chr5 14186951 14186990 -138350269 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2 693 378 0 0 0 chr5 14188193 14188235 -138349024 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 693 180 204 23 0 chr5 14188642 14188686 -138348573 + MIR SINE MIR 100 144 -64 2 693 540 0 0 0 chr5 14188695 14188755 -138348504 + (CAAAG)n Simple_repeat Simple_repeat 1 60 0 2 693 348 343 100 13 chr5 14189405 14189644 -138347615 - L1MD2 LINE L1 -368 5991 5732 2 693 330 156 0 0 chr5 14190152 14190216 -138347043 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 693 543 373 0 26 chr5 14191317 14191471 -138345788 + RSINE1 SINE B4 1 150 -15 2 693 1555 239 60 32 chr5 14191493 14191896 -138345363 - MTD LTR MaLR -2 417 4 2 693 999 17 0 0 chr5 14192207 14192324 -138344935 + (TTCTC)n Simple_repeat Simple_repeat 4 120 0 2 693 522 83 0 0 chr5 14192324 14192396 -138344863 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 693 1033 107 0 0 chr5 14192396 14192536 -138344723 - B1_Mus1 SINE Alu -6 142 3 2 693 601 56 37 9 chr5 14192555 14192663 -138344596 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 2 693 858 135 14 14 chr5 14193027 14193170 -138344089 - B1_Mur4 SINE Alu 0 150 8 2 693 504 228 0 38 chr5 14194248 14194353 -138342906 + PB1D9 SINE Alu 6 106 -14 2 693 532 137 10 10 chr5 14194644 14194747 -138342512 + (TA)n Simple_repeat Simple_repeat 1 103 0 2 693 24 67 0 0 chr5 14196498 14196543 -138340716 + AT_rich Low_complexity Low_complexity 1 45 0 2 693 392 306 23 6 chr5 14196613 14196784 -138340475 - Lx9 LINE L1 -153 7491 7318 2 693 2928 262 69 12 chr5 14196795 14197637 -138339622 - Lx9 LINE L1 -374 7270 6381 2 693 432 67 0 0 chr5 14197684 14197744 -138339515 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 693 21 71 0 0 chr5 14198061 14198103 -138339156 + AT_rich Low_complexity Low_complexity 1 42 0 2 693 21 0 0 0 chr5 14198181 14198202 -138339057 + AT_rich Low_complexity Low_complexity 1 21 0 2 693 1017 191 4 4 chr5 14199630 14199819 -138337440 - RMER17C LTR ERVK 0 410 222 2 693 369 0 0 0 chr5 14199819 14199860 -138337399 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 693 1017 172 59 46 chr5 14199860 14199985 -138337274 - RMER17C LTR ERVK -189 221 1 2 693 271 123 0 17 chr5 14200372 14200430 -138336829 - L1Md_T LINE L1 -2 6580 6524 2 693 184 167 42 0 chr5 14201442 14201490 -138335769 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 693 646 109 18 0 chr5 14202679 14202789 -138334470 + (GGA)n Simple_repeat Simple_repeat 3 114 0 2 693 1011 161 0 0 chr5 14202790 14202970 -138334289 + GA-rich Low_complexity Low_complexity 1 180 0 2 693 3318 38 5 0 chr5 14202973 14203367 -138333892 - MTA_Mm LTR MaLR 0 396 1 2 693 1017 0 0 0 chr5 14203367 14203480 -138333779 + (GAA)n Simple_repeat Simple_repeat 2 114 0 2 693 574 295 59 33 chr5 14204220 14204490 -138332769 - L1MA6 LINE L1 -24 6276 6000 2 693 1841 257 65 67 chr5 14204706 14205433 -138331826 - RMER13A LTR ERVK -94 814 42 2 693 639 130 10 0 chr5 14205860 14205960 -138331299 - B2_Mm2 SINE B2 -94 101 1 3 693 387 347 95 36 chr5 14206270 14206491 -138330768 - MLT1D LTR MaLR -190 315 82 3 693 1372 68 0 25 chr5 14207210 14207406 -138329853 - L1_Mus2 LINE L1 -1 6565 6375 3 693 2141 127 12 0 chr5 14207932 14208255 -138329004 - ORR1A2 LTR MaLR 0 327 1 3 693 254 357 49 25 chr5 14208661 14208865 -138328394 - Charlie13a DNA Charlie -832 682 474 3 693 273 336 115 0 chr5 14210910 14211014 -138326245 - RSINE1 SINE B4 0 165 50 3 693 195 42 0 0 chr5 14211048 14211072 -138326187 + (T)n Simple_repeat Simple_repeat 1 24 0 3 693 5318 42 0 0 chr5 14211098 14211739 -138325520 - L1Md_T LINE L1 0 6582 5942 3 693 703 250 104 5 chr5 14212252 14212445 -138324814 + B3 SINE B2 2 213 -3 3 693 22 0 0 0 chr5 14212445 14212467 -138324792 + AT_rich Low_complexity Low_complexity 1 22 0 3 693 28 79 0 0 chr5 14212702 14212765 -138324494 + AT_rich Low_complexity Low_complexity 1 63 0 3 693 235 296 129 47 chr5 14213489 14213659 -138323600 - AmnSINE1 SINE SINE -76 499 316 3 693 256 116 23 23 chr5 14214023 14214067 -138323192 - RMER1C Other Other -146 1196 1153 3 693 348 329 13 13 chr5 14214083 14214240 -138323019 - Lx7 LINE L1 -502 7194 7038 3 693 489 299 7 14 chr5 14214389 14214528 -138322731 - B1_Mur1 SINE Alu -8 141 4 3 693 260 238 16 0 chr5 14215325 14215388 -138321871 + (TATG)n Simple_repeat Simple_repeat 1 64 0 3 693 519 343 60 32 chr5 14215394 14215677 -138321582 - B4A SINE B4 0 292 2 3 693 23 0 0 0 chr5 14215959 14215982 -138321277 + AT_rich Low_complexity Low_complexity 1 23 0 3 693 26 74 0 0 chr5 14216045 14216099 -138321160 + AT_rich Low_complexity Low_complexity 1 54 0 3 693 342 0 0 0 chr5 14217481 14217519 -138319740 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3 693 21 36 0 0 chr5 14218724 14218752 -138318507 + AT_rich Low_complexity Low_complexity 1 28 0 3 693 1162 310 100 17 chr5 14219263 14219841 -138317418 - Lx8 LINE L1 -296 7177 6552 3 693 187 202 38 9 chr5 14220119 14220224 -138317035 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 693 21 36 0 0 chr5 14220259 14220287 -138316972 + AT_rich Low_complexity Low_complexity 1 28 0 3 693 4685 57 8 2 chr5 14220560 14221156 -138316103 - L1_Mus3 LINE L1 0 6638 6039 3 693 424 0 18 18 chr5 14221765 14221822 -138315437 + (TTA)n Simple_repeat Simple_repeat 2 58 0 3 693 3490 111 34 4 chr5 14221835 14222371 -138314888 - Lx3_Mus LINE L1 -60 6949 6398 3 693 1295 79 0 11 chr5 14222503 14222682 -138314577 - B2_Mm2 SINE B2 -18 177 1 3 693 264 340 68 42 chr5 14222979 14223128 -138314131 + B4 SINE B4 98 249 -43 3 693 345 252 20 10 chr5 14224797 14224897 -138312362 + (CATATA)n Simple_repeat Simple_repeat 2 102 0 3 693 507 304 50 12 chr5 14226041 14226201 -138311058 + B3A SINE B2 1 166 -32 3 693 3201 143 145 15 chr5 14227292 14227961 -138309298 - RMER6A LTR ERVK 0 756 1 3 693 199 250 29 14 chr5 14229057 14229126 -138308133 - MIRc SINE MIR -16 252 183 3 693 522 350 28 0 chr5 14229525 14229668 -138307591 + RSINE1 SINE B4 2 148 -17 3 693 405 39 0 0 chr5 14229681 14229732 -138307527 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 693 255 130 0 0 chr5 14229735 14229789 -138307470 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 693 306 0 0 0 chr5 14230012 14230046 -138307213 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 693 216 0 0 0 chr5 14230046 14230070 -138307189 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 693 234 0 0 0 chr5 14231787 14231813 -138305446 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 3 693 2768 161 51 22 chr5 14232269 14232814 -138304445 - RLTR31_Mm LTR ERVK 0 561 1 3 693 951 338 66 58 chr5 14234267 14234814 -138302445 + MER82 DNA MER2_type 102 652 -1 3 693 481 333 0 0 chr5 14235191 14235347 -138301912 + RSINE1 SINE B4 4 159 -6 3 693 1097 123 6 0 chr5 14236480 14236659 -138300600 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 3 693 24 53 0 0 chr5 14237287 14237325 -138299934 + AT_rich Low_complexity Low_complexity 1 38 0 3 693 183 80 0 0 chr5 14237522 14237547 -138299712 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 3 693 246 246 203 8 chr5 14238243 14238366 -138298893 - L1MA6 LINE L1 -34 6266 6120 3 693 191 61 30 0 chr5 14240204 14240237 -138297022 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 693 1093 29 50 7 chr5 14240237 14240378 -138296881 - B1_Mm SINE Alu 0 147 1 3 693 417 378 74 5 chr5 14241211 14241413 -138295846 + B4 SINE B4 64 279 -13 3 693 225 0 0 0 chr5 14241555 14241580 -138295679 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 693 419 324 34 14 chr5 14242414 14242561 -138294698 + Lx7 LINE L1 7098 7247 -449 3 693 306 0 0 0 chr5 14242573 14242607 -138294652 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 693 198 118 0 0 chr5 14242623 14242657 -138294602 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 693 203 291 0 28 chr5 14242714 14242759 -138294500 + A-rich Low_complexity Low_complexity 1 43 0 3 693 679 107 0 9 chr5 14242759 14242932 -138294327 + L1_Mus1 LINE L1 6456 6567 0 3 693 252 327 136 0 chr5 14244384 14244494 -138292765 - MIRb SINE MIR -102 166 42 3 693 185 371 152 0 chr5 14245030 14245162 -138292097 - MIR SINE MIR -30 232 81 3 693 278 373 30 0 chr5 14245365 14245499 -138291760 - MIRb SINE MIR -5 263 126 3 693 238 282 27 40 chr5 14246570 14246644 -138290615 + MER58B DNA MER1_type 266 338 -3 3 693 280 64 43 0 chr5 14251056 14251103 -138286156 + (CAATA)n Simple_repeat Simple_repeat 2 50 0 3 693 686 240 60 33 chr5 14251250 14251401 -138285858 + RSINE1 SINE B4 9 163 -2 3 693 459 0 0 0 chr5 14251404 14251455 -138285804 + (CATA)n Simple_repeat Simple_repeat 2 52 0 3 693 21 0 0 0 chr5 14253095 14253116 -138284143 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 34 0 0 0 chr5 14253645 14253679 -138283580 + AT_rich Low_complexity Low_complexity 1 34 0 3 693 1153 89 0 0 chr5 14254557 14254703 -138282556 - B1_Mus2 SINE Alu 0 147 2 3 693 21 57 0 0 chr5 14254776 14254811 -138282448 + AT_rich Low_complexity Low_complexity 1 35 0 3 693 24 32 0 0 chr5 14255054 14255085 -138282174 + AT_rich Low_complexity Low_complexity 1 31 0 3 693 297 145 0 0 chr5 14255163 14255225 -138282034 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 693 248 259 9 0 chr5 14256731 14256839 -138280420 + CT-rich Low_complexity Low_complexity 3 111 0 3 693 1093 327 44 23 chr5 14257441 14257923 -138279336 - RMER5 LTR ERV1 -10 524 33 3 693 1065 271 3 51 chr5 14258316 14258612 -138278647 + Lx6 LINE L1 7133 7414 -46 3 693 337 322 19 12 chr5 14259189 14259309 -138277950 - MTE2b LTR MaLR -261 118 1 3 693 513 286 85 22 chr5 14259318 14259590 -138277669 + L1M2 LINE L1 4675 4963 -1180 3 693 892 314 67 27 chr5 14259665 14260071 -138277188 - Lx6 LINE L1 -26 7434 7013 3 693 1101 212 34 34 chr5 14260076 14260340 -138276919 - RMER19A LTR ERVK 0 737 474 3 693 1218 234 155 21 chr5 14260308 14260845 -138276414 - BGLII_B LTR ERVK -37 516 1 3 693 559 286 12 49 chr5 14260878 14261004 -138276255 - Lx5 LINE L1 -420 6630 6506 3 693 3330 115 39 77 chr5 14261004 14261599 -138275660 + Lx2A LINE L1 6437 7008 0 3 693 559 286 12 49 chr5 14261599 14261634 -138275625 - Lx5 LINE L1 -545 6505 6475 3 693 2699 225 45 17 chr5 14261688 14262327 -138274932 - Lx6 LINE L1 -1187 6273 5617 3 693 1190 183 0 116 chr5 14262338 14262408 -138274851 - L1_Mur3 LINE L1 -2295 3582 3527 3 693 3318 69 9 0 chr5 14262408 14262831 -138274428 + L1_Mus1 LINE L1 6141 6567 0 3 693 1190 183 0 116 chr5 14262831 14263087 -138274172 - L1_Mur3 LINE L1 -2351 3526 3294 3 693 1975 247 22 51 chr5 14263096 14263680 -138273579 - RMER2 LTR ERV1 0 567 1 3 693 581 297 27 21 chr5 14263681 14263867 -138273392 - Lx6 LINE L1 -333 7127 6941 3 693 719 170 0 28 chr5 14263867 14264043 -138273216 + CT-rich Low_complexity Low_complexity 3 173 0 3 693 1983 133 48 3 chr5 14264046 14264377 -138272882 - RMER19A LTR ERVK -5 732 387 3 693 961 209 38 37 chr5 14264389 14264755 -138272504 - L1_Mur3 LINE L1 -4371 1506 1140 3 693 2613 90 52 0 chr5 14264777 14265143 -138272116 + Lx3A LINE L1 6572 6956 -25 3 693 276 53 0 0 chr5 14265143 14265181 -138272078 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 693 803 255 5 1 chr5 14265196 14265410 -138271849 - L1_Mur3 LINE L1 -6640 1088 886 3 693 725 250 146 14 chr5 14265532 14265751 -138271508 - ORR1B2 LTR MaLR -119 248 1 3 693 1619 206 46 62 chr5 14266578 14266966 -138270293 - RLTR14 LTR ERV1 0 382 1 3 693 601 282 6 28 chr5 14267785 14267964 -138269295 + Lx6 LINE L1 7286 7460 0 3 693 226 318 111 0 chr5 14268138 14268264 -138268995 - L1MA10 LINE L1 -15 6319 6180 3 693 423 0 0 0 chr5 14268670 14268717 -138268542 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 693 558 256 20 7 chr5 14268990 14269155 -138268104 - Lx7 LINE L1 -11 7685 7541 3 693 688 166 12 47 chr5 14269182 14269353 -138267906 + RMER1A Other Other 844 1008 -22 3 693 8515 28 0 0 chr5 14269489 14270624 -138266635 - L1Md_T LINE L1 -1 6581 5447 3 693 38827 29 3 1 chr5 14270619 14276772 -138260487 - L1Md_A LINE L1 -2 6580 416 3 693 1679 254 26 58 chr5 14277067 14277565 -138259694 - RMER19C LTR ERVK -4 607 126 3 693 1183 219 21 165 chr5 14277592 14278151 -138259108 - Lx7 LINE L1 -156 7540 7062 3 693 361 145 0 0 chr5 14278151 14278213 -138259046 - Lx7 LINE L1 -875 6821 6760 3 693 16000 148 11 130 chr5 14278229 14285085 -138252174 - L1_Mus4 LINE L1 -7 6629 619 3 693 3881 239 58 34 chr5 14285177 14285694 -138251565 - Lx7 LINE L1 -946 6750 6253 3 693 3355 33 10 0 chr5 14285694 14286086 -138251173 + MTA_Mm LTR MaLR 1 396 0 3 86 5061 224 76 21 chr5 14286086 14288202 -138249057 - Lx7 LINE L1 -1444 6252 3813 3 694 2756 110 60 37 chr5 14288202 14288665 -138248594 + MT2C_Mm LTR ERVL 1 474 -1 3 694 3720 275 165 20 chr5 14288665 14288938 -138248321 - Lx7 LINE L1 -2074 3812 3552 3 694 5416 184 70 30 chr5 14288933 14289008 -138248251 - L1_Mur3 LINE L1 -2755 3125 3048 3 694 198 0 0 0 chr5 14289008 14289030 -138248229 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 694 5416 184 70 30 chr5 14289030 14289965 -138247294 - L1_Mur3 LINE L1 -2833 3047 2058 3 694 414 0 0 0 chr5 14289965 14290011 -138247248 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 694 5416 184 70 30 chr5 14290011 14290410 -138246849 - L1_Mur3 LINE L1 -3823 2057 1660 3 694 1383 216 116 57 chr5 14290411 14290764 -138246495 + ORR1C1 LTR MaLR 1 374 -4 4 694 1392 87 10 0 chr5 14290773 14290968 -138246291 - L1_Mur1 LINE L1 -319 5567 5371 4 694 1546 120 38 26 chr5 14290968 14291384 -138245875 - RLTR45 LTR ERVK 0 482 15 4 694 6541 52 14 0 chr5 14291386 14292255 -138245004 - L1Md_F3 LINE L1 0 6584 5704 4 694 5693 48 1 3 chr5 14292252 14292989 -138244270 + L1Md_F3 LINE L1 4961 5696 -187 4 694 3599 96 50 18 chr5 14293015 14293144 -138244115 - L1_Mur1 LINE L1 -510 5376 5252 4 694 459 0 0 0 chr5 14293144 14293195 -138244064 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 694 3599 96 50 18 chr5 14293195 14293681 -138243578 - L1_Mur1 LINE L1 -635 5251 4743 4 694 4539 70 7 18 chr5 14293680 14294358 -138242901 - L1_Mur1 LINE L1 -3570 2316 1646 4 694 1043 302 91 34 chr5 14294358 14294629 -138242630 + ORR1C1-int LTR MaLR 5 285 -1224 4 694 306 0 0 0 chr5 14294629 14294663 -138242596 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 4 694 1043 302 91 34 chr5 14294663 14294895 -138242364 + ORR1C1-int LTR MaLR 286 536 -973 4 694 355 191 44 0 chr5 14294897 14294965 -138242294 - 4.5SRNA scRNA scRNA -22 72 2 4 694 877 193 118 20 chr5 14294968 14295222 -138242037 + L1_Mur3 LINE L1 3784 4062 -1818 4 694 2263 186 74 9 chr5 14295227 14295782 -138241477 + L1_Mur3 LINE L1 4865 5455 -425 4 694 778 231 9 28 chr5 14295783 14296001 -138241258 + L1VL1 LINE L1 84 297 -6125 4 694 31747 76 15 20 chr5 14296065 14301604 -138235655 + L1Md_F2 LINE L1 118 5586 -297 4 694 7930 53 1 5 chr5 14301604 14302604 -138234655 + L1Md_F2 LINE L1 5587 6582 0 4 694 3604 222 39 11 chr5 14302765 14303897 -138233362 + Lx6 LINE L1 5442 6601 -859 4 694 402 155 28 0 chr5 14303892 14303963 -138233296 + Lx6 LINE L1 6814 6886 -810 4 694 750 23 0 0 chr5 14303964 14304052 -138233207 + (GA)n Simple_repeat Simple_repeat 2 89 0 4 694 905 78 8 0 chr5 14304052 14304180 -138233079 + RMER19A LTR ERVK 13 141 -596 4 694 518 332 95 26 chr5 14304182 14304854 -138232405 - L1M5 LINE L1 -2168 3978 3211 4 694 8045 48 3 2 chr5 14304876 14305868 -138231391 + L1Md_F2 LINE L1 5589 6581 -1 4 694 3984 61 0 0 chr5 14305963 14306458 -138230801 - L1Md_F2 LINE L1 -19 6563 6069 4 694 3002 143 120 7 chr5 14306458 14306999 -138230260 + RMER19A LTR ERVK 131 732 -5 4 694 324 94 0 0 chr5 14307002 14307055 -138230204 + (GGGAGA)n Simple_repeat Simple_repeat 3 55 0 4 694 430 313 43 43 chr5 14307055 14307242 -138230017 + Lx6 LINE L1 6941 7127 -333 4 694 2191 234 28 55 chr5 14307243 14307807 -138229452 + RMER2 LTR ERV1 1 549 -18 4 694 241 192 171 40 chr5 14307827 14307903 -138229356 + Lx6 LINE L1 7127 7212 -248 4 694 2947 197 33 60 chr5 14307907 14308076 -138229183 - RMER1B Other Other -4 1062 903 4 694 1944 147 3 7 chr5 14308076 14308385 -138228874 - RLTR10E LTR ERVK -3 308 1 4 694 2947 205 41 53 chr5 14308385 14309059 -138228200 - RMER1B Other Other -164 902 138 4 694 340 246 30 23 chr5 14309073 14309206 -138228053 + Lx7 LINE L1 7467 7600 -96 4 694 3036 224 60 31 chr5 14309216 14310138 -138227121 + ORR1C1-int LTR MaLR 420 1509 0 4 694 1565 162 107 66 chr5 14310138 14310315 -138226944 + ORR1C1 LTR MaLR 1 165 -213 4 694 186 43 0 0 chr5 14310315 14310338 -138226921 + (TC)n Simple_repeat Simple_repeat 2 24 0 4 694 1565 162 107 66 chr5 14310338 14310523 -138226736 + ORR1C1 LTR MaLR 166 377 -1 4 694 1324 196 165 0 chr5 14310530 14310740 -138226519 - L1_Mur3 LINE L1 -4233 1647 1423 4 694 405 0 0 0 chr5 14310740 14310785 -138226474 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 694 1324 160 90 3 chr5 14310785 14311124 -138226135 - L1_Mur3 LINE L1 -4458 1422 1027 4 694 531 138 0 0 chr5 14311139 14311226 -138226033 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 694 327 104 0 0 chr5 14311417 14311465 -138225794 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 694 24 32 0 0 chr5 14311584 14311615 -138225644 + AT_rich Low_complexity Low_complexity 1 31 0 4 694 291 293 12 24 chr5 14312530 14312614 -138224645 + ORR1E LTR MaLR 3 85 -274 4 694 592 294 24 59 chr5 14312796 14312966 -138224293 - RSINE1 SINE B4 0 165 2 4 694 287 237 26 53 chr5 14313070 14313173 -138224086 + ORR1E LTR MaLR 247 365 -14 4 694 2729 44 0 0 chr5 14313294 14313632 -138223627 - ORR1A1 LTR MaLR -8 338 1 4 694 423 0 0 0 chr5 14314281 14314328 -138222931 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 694 622 289 35 0 chr5 14314336 14314478 -138222781 - RSINE1 SINE B4 -16 149 3 4 694 243 0 0 0 chr5 14314568 14314595 -138222664 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 694 1138 296 34 12 chr5 14314600 14314922 -138222337 - MTE2b LTR MaLR -50 329 1 4 694 234 351 378 30 chr5 14314967 14315270 -138221989 - LTR40c LTR ERVL -19 500 93 4 694 942 166 191 51 chr5 14315530 14315803 -138221456 + RMER2 LTR ERV1 1 311 -256 4 694 3922 89 8 1 chr5 14315819 14316803 -138220456 + L1VL4 LINE L1 401 1389 -2170 4 694 4349 119 4 10 chr5 14316801 14317497 -138219762 + Lx2 LINE L1 5955 6646 -351 4 694 1456 129 12 0 chr5 14317478 14317718 -138219541 + Lx2 LINE L1 6755 6997 0 4 694 495 33 0 0 chr5 14317751 14317812 -138219447 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 694 558 288 33 103 chr5 14317815 14318028 -138219231 + RMER2 LTR ERV1 370 567 0 4 694 5491 82 9 11 chr5 14318635 14319419 -138217840 + RLTR13C2 LTR ERVK 4 785 -23 4 694 243 169 0 0 chr5 14319975 14320046 -138217213 + (CAGAA)n Simple_repeat Simple_repeat 1 71 0 4 694 1177 74 0 0 chr5 14321025 14321173 -138216086 - B1_Mus1 SINE Alu 0 148 1 4 694 468 91 0 0 chr5 14322547 14322613 -138214646 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 4 694 609 329 77 47 chr5 14322756 14323094 -138214165 - ORR1E LTR MaLR -11 348 1 4 694 201 406 47 0 chr5 14323699 14323827 -138213432 + MIR SINE MIR 23 156 -106 4 694 1881 112 47 50 chr5 14327414 14327753 -138209506 + Lx LINE L1 6317 6654 0 4 694 1693 276 171 22 chr5 14329092 14329760 -138207499 - Lx5 LINE L1 -46 7414 6455 4 694 533 300 30 36 chr5 14330345 14330674 -138206585 - L1MA6 LINE L1 -35 6265 5939 4 694 3603 153 25 6 chr5 14331405 14332048 -138205211 - L1_Mus4 LINE L1 -145 5738 5084 4 694 6234 74 11 11 chr5 14332045 14332943 -138204316 + L1_Mus4 LINE L1 5735 6632 -4 4 694 4086 160 41 8 chr5 14333309 14334023 -138203236 - RMER19A LTR ERVK 0 737 1 4 694 705 282 20 10 chr5 14335198 14335402 -138201857 - RMER15 LTR ERVL -68 507 302 4 694 780 154 31 0 chr5 14335709 14335839 -138201420 - B1_Mur3 SINE Alu -10 139 6 4 694 218 32 0 31 chr5 14338646 14338678 -138198581 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 4 694 476 311 91 71 chr5 14338803 14339056 -138198203 - B4 SINE B4 -16 276 19 4 694 270 307 30 0 chr5 14339125 14339226 -138198033 + L1MEb LINE L1 46 149 -5921 4 694 610 267 70 48 chr5 14339311 14339462 -138197797 + RLTR16 LTR ERVK 1 154 -351 4 694 3332 35 2 5 chr5 14339462 14339859 -138197400 - MTA_Mm LTR MaLR 0 396 1 4 694 610 292 74 76 chr5 14339859 14340081 -138197178 + RLTR16 LTR ERVK 155 433 -259 4 694 195 42 0 0 chr5 14340712 14340736 -138196523 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4 694 1929 182 12 51 chr5 14341102 14341512 -138195747 + ORR1B1 LTR MaLR 1 394 0 4 694 243 342 52 52 chr5 14341758 14341952 -138195307 - L2 LINE L2 -2393 1026 833 4 694 22 88 0 0 chr5 14342431 14342488 -138194771 + AT_rich Low_complexity Low_complexity 1 57 0 4 694 1175 68 0 0 chr5 14343633 14343780 -138193479 + B1_Mus2 SINE Alu 1 147 0 4 694 642 89 0 0 chr5 14343882 14343972 -138193287 + (CA)n Simple_repeat Simple_repeat 2 91 0 4 694 279 0 0 0 chr5 14343998 14344029 -138193230 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 694 234 352 123 0 chr5 14344041 14344163 -138193096 - MT2A LTR ERVL -76 457 321 4 694 535 310 97 11 chr5 14344155 14344320 -138192939 - MT2A LTR ERVL -108 425 245 4 694 183 42 0 0 chr5 14344320 14344344 -138192915 + (CAG)n Simple_repeat Simple_repeat 3 26 0 4 694 343 278 108 23 chr5 14344428 14344557 -138192702 - MTE2a LTR MaLR -239 140 1 4 694 21 36 0 0 chr5 14344605 14344633 -138192626 + AT_rich Low_complexity Low_complexity 1 28 0 4 694 310 218 213 20 chr5 14344719 14344916 -138192343 - Zaphod DNA Tip100 -199 3832 3598 4 694 363 23 0 0 chr5 14345279 14345323 -138191936 + (T)n Simple_repeat Simple_repeat 1 44 0 4 694 1090 55 14 20 chr5 14345327 14345474 -138191785 - B1_Mus2 SINE Alu 0 147 2 4 694 1768 46 0 0 chr5 14345522 14345739 -138191520 - L1Md_T LINE L1 0 6582 6366 4 694 263 297 179 11 chr5 14346339 14346523 -138190736 - Zaphod DNA Tip100 -3458 573 359 4 694 21 71 0 0 chr5 14347195 14347237 -138190022 + AT_rich Low_complexity Low_complexity 1 42 0 4 694 468 0 0 0 chr5 14347756 14347808 -138189451 + (TTTC)n Simple_repeat Simple_repeat 2 53 0 4 694 1066 103 0 14 chr5 14347826 14347974 -138189285 + B1_Mus1 SINE Alu 3 148 0 4 694 967 261 24 66 chr5 14349463 14349750 -138187509 - Lx8 LINE L1 -193 7280 7006 4 694 713 258 41 184 chr5 14349784 14350220 -138187039 + ORR1D1 LTR MaLR 1 374 0 4 694 4680 240 64 31 chr5 14350220 14351447 -138185812 + ORR1D1-int LTR MaLR 1 1267 -103 4 694 335 284 72 66 chr5 14351458 14351639 -138185620 - ORR1D-int LTR MaLR -602 768 587 4 694 272 254 0 0 chr5 14351637 14351700 -138185559 + ORR1D1-int LTR MaLR 1276 1338 -32 4 694 548 277 15 0 chr5 14351700 14351830 -138185429 - Lx8 LINE L1 -779 6694 6563 4 694 2034 148 6 6 chr5 14351865 14352192 -138185067 + ORR1A2 LTR MaLR 1 327 0 4 694 226 158 0 0 chr5 14352216 14352254 -138185005 + B3A SINE B2 1 38 -160 4 694 571 143 8 67 chr5 14352227 14352347 -138184912 + B2_Mm2 SINE B2 81 193 -2 4 694 24 0 0 0 chr5 14352377 14352401 -138184858 + AT_rich Low_complexity Low_complexity 1 24 0 4 694 930 134 24 0 chr5 14352502 14352666 -138184593 - Lx3B LINE L1 -4 6969 6802 4 694 2784 106 94 28 chr5 14352666 14353229 -138184030 + RMER17A2 LTR ERVK 1 581 -228 4 694 7464 103 14 27 chr5 14353249 14354363 -138182896 - Lx3B LINE L1 -166 6807 5709 4 694 7600 142 16 4 chr5 14354608 14355890 -138181369 - L1_Mur1 LINE L1 -3082 2804 1507 4 694 448 122 27 0 chr5 14355882 14355956 -138181303 - L1_Mur1 LINE L1 -4304 1582 1507 4 694 420 103 0 0 chr5 14355956 14356014 -138181245 - L1_Mur1 LINE L1 -4314 1572 1515 4 694 878 129 13 0 chr5 14356014 14356169 -138181090 - L1_Mur1 LINE L1 -4304 1582 1426 4 694 4367 116 30 15 chr5 14356187 14356859 -138180400 - Lx LINE L1 -18 6636 5955 4 694 1258 195 9 0 chr5 14356859 14357085 -138180174 + L1_Mur3 LINE L1 5382 5609 -271 4 694 3203 46 13 0 chr5 14357087 14357478 -138179781 - MTA_Mm LTR MaLR 0 396 1 4 694 7891 67 29 15 chr5 14357478 14358561 -138178698 - MTA_Mm-int LTR MaLR 0 1098 1 4 694 3230 61 0 0 chr5 14358561 14358957 -138178302 - MTA_Mm LTR MaLR 0 396 1 4 694 2066 164 190 21 chr5 14358957 14359452 -138177807 - L1_Mur1 LINE L1 -5896 1088 523 4 694 21 36 0 0 chr5 14359455 14359483 -138177776 + AT_rich Low_complexity Low_complexity 1 28 0 4 694 192 299 29 15 chr5 14360688 14360756 -138176503 + L2a LINE L2 3125 3193 -233 4 694 1432 301 99 9 chr5 14360913 14361372 -138175887 - Lx8 LINE L1 -9 7464 6962 4 694 2978 137 22 35 chr5 14361372 14361908 -138175351 + RMER16 LTR ERVK 5 533 0 4 694 1432 301 99 9 chr5 14361908 14362014 -138175245 - Lx8 LINE L1 -512 6961 6849 4 694 377 245 40 30 chr5 14362033 14362134 -138175125 - PB1D9 SINE Alu -13 107 6 4 694 261 333 82 0 chr5 14362341 14362500 -138174759 - Lx8 LINE L1 -102 7371 7200 4 694 287 352 0 0 chr5 14362498 14362620 -138174639 - L1MC4a LINE L1 -28 7854 7733 4 694 289 159 132 99 chr5 14362623 14362714 -138174545 - L1MD2 LINE L1 -207 6152 6059 5 694 216 97 0 0 chr5 14362875 14362906 -138174353 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 694 24 0 0 0 chr5 14363761 14363785 -138173474 + AT_rich Low_complexity Low_complexity 1 24 0 5 694 935 208 70 15 chr5 14366385 14366585 -138170674 - B3 SINE B2 -5 211 1 5 694 21 0 0 0 chr5 14366899 14366920 -138170339 + AT_rich Low_complexity Low_complexity 1 21 0 5 694 282 152 0 0 chr5 14367185 14367231 -138170028 + MT2B LTR ERVL 1 46 -555 5 694 3447 149 43 21 chr5 14367231 14367854 -138169405 + Lx3B LINE L1 6335 6971 -2 5 694 229 265 58 48 chr5 14368004 14368107 -138169152 - Lx8 LINE L1 -2 7471 7368 5 694 22 56 0 0 chr5 14368297 14368333 -138168926 + AT_rich Low_complexity Low_complexity 1 36 0 5 694 465 233 94 50 chr5 14370428 14370609 -138166650 - Lx7 LINE L1 -1 7695 7507 5 694 2037 104 0 0 chr5 14370614 14370892 -138166367 - L1_Mm LINE L1 -240 5643 5366 5 694 3431 164 64 24 chr5 14370893 14371594 -138165665 + RLTR13D6 LTR ERVK 174 902 0 5 694 5444 94 1 15 chr5 14371595 14372408 -138164851 + L1_Mur1 LINE L1 1633 2434 -3452 5 694 1143 192 79 52 chr5 14372365 14372409 -138164850 - L1_Mur3 LINE L1 -537 5340 5297 5 694 1615 21 0 21 chr5 14372409 14372602 -138164657 - B2_Mm1t SINE B2 -4 189 1 5 694 1143 192 79 52 chr5 14372602 14372674 -138164585 - L1_Mur3 LINE L1 -581 5296 5234 5 694 3684 122 76 3 chr5 14372674 14373264 -138163995 - Lx2 LINE L1 0 6997 6365 5 694 1143 192 79 52 chr5 14373264 14373475 -138163784 - L1_Mur3 LINE L1 -644 5233 5003 5 694 4616 148 13 7 chr5 14373470 14374232 -138163027 + Lx2 LINE L1 5657 6423 -574 5 694 3501 161 128 33 chr5 14374247 14375092 -138162167 - L1_Mur3 LINE L1 -2820 3060 2136 5 694 3664 191 252 9 chr5 14375080 14375655 -138161604 - L1_Mur3 LINE L1 -3999 1881 1169 5 694 441 0 0 0 chr5 14375655 14375704 -138161555 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 5 694 3664 205 90 42 chr5 14375704 14376536 -138160723 - L1_Mur3 LINE L1 -6560 1168 298 5 694 342 0 0 0 chr5 14376709 14376747 -138160512 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 694 36497 26 2 8 chr5 14377050 14382089 -138155170 + L1Md_T LINE L1 581 5586 -297 5 694 8315 37 1 0 chr5 14382089 14383082 -138154177 + L1Md_T LINE L1 5587 6580 -2 5 694 183 42 0 0 chr5 14383505 14383529 -138153730 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5 694 650 276 40 40 chr5 14384019 14384291 -138152968 + B4A SINE B4 2 273 -19 5 694 471 219 205 28 chr5 14385121 14385291 -138151968 - B3 SINE B2 -6 189 1 5 694 188 111 28 0 chr5 14385713 14385749 -138151510 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 694 25 0 0 0 chr5 14386025 14386050 -138151209 + AT_rich Low_complexity Low_complexity 1 25 0 5 694 21 0 0 0 chr5 14386366 14386387 -138150872 + AT_rich Low_complexity Low_complexity 1 21 0 5 694 844 146 12 0 chr5 14387328 14387492 -138149767 + CT-rich Low_complexity Low_complexity 3 168 0 5 694 7165 44 9 2 chr5 14387579 14388451 -138148808 - L1Md_F2 LINE L1 -15 6567 5690 5 694 3669 59 0 0 chr5 14388449 14388923 -138148336 + L1_Mm LINE L1 3984 4457 -1426 5 694 2109 49 0 4 chr5 14389023 14389287 -138147972 + L1Md_F2 LINE L1 6314 6576 -6 5 694 931 214 10 0 chr5 14389590 14389791 -138147468 - Lx5 LINE L1 -3 7047 6845 5 694 346 331 19 45 chr5 14390156 14390311 -138146948 - Charlie10a DNA MER1_type -30 250 100 5 694 1333 273 53 5 chr5 14390410 14390785 -138146474 + Lx6 LINE L1 7056 7448 -12 5 694 21 71 0 0 chr5 14393263 14393305 -138143954 + AT_rich Low_complexity Low_complexity 1 42 0 5 694 545 328 71 20 chr5 14393306 14393502 -138143757 + B4A SINE B4 1 206 -86 5 694 1181 215 44 30 chr5 14393508 14393805 -138143454 + ORR1D1 LTR MaLR 3 303 -71 5 694 193 29 0 56 chr5 14393814 14393850 -138143409 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 5 694 246 128 81 7 chr5 14393857 14393919 -138143340 + ORR1D1 LTR MaLR 292 407 -14 5 694 21 0 0 0 chr5 14394032 14394053 -138143206 + AT_rich Low_complexity Low_complexity 1 21 0 5 694 23 0 0 0 chr5 14394164 14394187 -138143072 + AT_rich Low_complexity Low_complexity 1 23 0 5 694 255 31 0 0 chr5 14395465 14395497 -138141762 + (T)n Simple_repeat Simple_repeat 1 32 0 5 694 37855 30 0 0 chr5 14395510 14401931 -138135328 - L1Md_T LINE L1 0 6585 68 5 694 1163 36 0 0 chr5 14402144 14402283 -138134976 + B1_Mus2 SINE Alu 2 140 -7 5 694 270 0 0 0 chr5 14402286 14402316 -138134943 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 694 37 102 0 0 chr5 14402540 14402668 -138134591 + AT_rich Low_complexity Low_complexity 1 128 0 5 694 24 53 0 0 chr5 14402690 14402728 -138134531 + AT_rich Low_complexity Low_complexity 1 38 0 5 694 429 276 53 16 chr5 14402744 14402932 -138134327 - L1M1 LINE L1 -525 5775 5581 5 694 3168 65 15 117 chr5 14403316 14403853 -138133406 - RLTR45 LTR ERVK 0 482 1 5 694 258 371 48 0 chr5 14404628 14404733 -138132526 + MER20 DNA MER1_type 61 170 -49 5 694 1278 301 55 5 chr5 14404777 14405177 -138132082 - Lx8 LINE L1 -796 6677 6258 5 694 5910 83 46 70 chr5 14405187 14406207 -138131052 - MusHAL1 LINE L1 -147 2565 1570 5 694 9445 82 9 16 chr5 14406210 14407595 -138129664 + MusHAL1 LINE L1 197 1572 -1140 5 694 1135 36 0 0 chr5 14407700 14407837 -138129422 + IAPLTR2_Mm LTR ERVK 1 137 -338 5 694 885 139 62 84 chr5 14407837 14408156 -138129103 + IAPEz-int LTR ERVK 211 429 -6052 5 694 3469 62 0 24 chr5 14408156 14408619 -138128640 + IAPEz-int LTR ERVK 211 662 -5819 5 694 2754 53 0 3 chr5 14408619 14408962 -138128297 + IAPEz-int LTR ERVK 1359 1700 -4781 5 694 6262 57 19 17 chr5 14408957 14409782 -138127477 + IAPEz-int LTR ERVK 5653 6479 -2 5 694 3148 42 108 11 chr5 14409784 14410217 -138127042 + IAPLTR2_Mm LTR ERVK 1 475 0 5 694 727 336 52 33 chr5 14410371 14410796 -138126463 + Lx8 LINE L1 6673 7105 -368 5 694 569 324 24 5 chr5 14411063 14411268 -138125991 + B3 SINE B2 2 210 -6 5 694 497 267 109 29 chr5 14411546 14411886 -138125373 - L1M4 LINE L1 -3072 3074 2708 5 694 393 142 15 197 chr5 14411920 14412052 -138125207 - Lx9 LINE L1 -579 7065 6958 5 694 529 254 32 0 chr5 14412095 14412221 -138125038 + Lx9 LINE L1 7079 7208 -436 5 694 208 240 0 0 chr5 14412256 14412306 -138124953 + CT-rich Low_complexity Low_complexity 2 51 0 5 694 362 282 66 37 chr5 14412307 14412443 -138124816 - ID_B1 SINE B4 0 224 85 5 694 605 263 8 0 chr5 14412328 14412446 -138124813 - B1_Mur1 SINE Alu -30 119 1 5 694 22 56 0 0 chr5 14412609 14412645 -138124614 + AT_rich Low_complexity Low_complexity 1 36 0 5 694 1460 317 73 27 chr5 14413068 14413173 -138124086 + Lx8 LINE L1 6536 6640 -833 5 694 2375 179 148 23 chr5 14413173 14413786 -138123473 - RMER6C LTR ERVK 0 690 1 5 694 1460 317 73 27 chr5 14413786 14414240 -138123019 + Lx8 LINE L1 6641 7121 -352 5 694 377 199 26 0 chr5 14414471 14414627 -138122632 + (TG)n Simple_repeat Simple_repeat 2 161 0 5 694 483 292 60 30 chr5 14415513 14415714 -138121545 - B3 SINE B2 -9 207 1 5 694 7283 92 52 5 chr5 14415882 14415947 -138121312 + Lx3_Mus LINE L1 5843 5908 -1101 5 694 473 16 33 0 chr5 14415947 14416008 -138121251 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 5 694 7283 92 52 5 chr5 14416008 14417049 -138120210 + Lx3_Mus LINE L1 5909 7000 -9 5 694 222 118 0 0 chr5 14417099 14417133 -138120126 + (A)n Simple_repeat Simple_repeat 1 34 0 5 694 905 95 15 0 chr5 14417226 14417363 -138119896 + (AGGGGG)n Simple_repeat Simple_repeat 2 140 0 5 694 26 30 0 0 chr5 14417371 14417404 -138119855 + AT_rich Low_complexity Low_complexity 1 33 0 5 694 421 280 67 8 chr5 14417419 14417538 -138119721 + RSINE1 SINE B4 22 147 -18 5 694 21 36 0 0 chr5 14417876 14417904 -138119355 + AT_rich Low_complexity Low_complexity 1 28 0 5 695 2213 71 0 0 chr5 14418720 14419000 -138118259 - L1_Mus1 LINE L1 0 6567 6288 5 695 11787 113 18 2 chr5 14419012 14421505 -138115754 + L1Md_F LINE L1 380 2913 -2970 5 695 1957 150 0 58 chr5 14421597 14421943 -138115316 + ORR1A3 LTR MaLR 1 326 0 5 695 235 182 114 0 chr5 14422230 14422274 -138114985 - RLTR28 LTR ERVL -14 510 462 5 695 427 279 60 29 chr5 14422291 14422477 -138114782 + RMER17C-int LTR ERVK 7343 7504 -1455 5 695 360 245 49 117 chr5 14422699 14422861 -138114398 + RMER17C-int LTR ERVK 2858 3008 -3129 5 695 629 222 440 10 chr5 14423500 14423700 -138113559 + ORR1C1 LTR MaLR 3 288 -90 5 695 578 259 66 45 chr5 14424155 14424464 -138112795 + RMER17C-int LTR ERVK 2628 2858 -380 5 695 268 309 48 24 chr5 14424667 14424793 -138112466 + RMER17C-int LTR ERVK 4220 4348 -1789 5 695 391 226 86 0 chr5 14424825 14424918 -138112341 + RLTR28B LTR ERVL 3 103 -421 5 695 403 261 100 77 chr5 14424996 14425107 -138112152 + RLTR28B LTR ERVL 117 221 -260 5 695 1966 163 80 0 chr5 14425107 14425469 -138111790 - ORR1B1 LTR MaLR -3 391 1 5 695 403 261 100 77 chr5 14425469 14425527 -138111732 + RLTR28B LTR ERVL 222 289 -192 5 695 227 266 15 30 chr5 14425754 14425820 -138111439 + RLTR28B LTR ERVL 446 510 -14 5 695 304 326 6 11 chr5 14425876 14425969 -138111290 + PB1D10 SINE Alu 9 98 -51 5 695 434 378 79 29 chr5 14426245 14426588 -138110671 - MLT1B LTR MaLR -30 360 1 5 695 50 31 0 0 chr5 14426768 14426832 -138110427 + AT_rich Low_complexity Low_complexity 1 64 0 5 695 242 200 73 0 chr5 14427027 14427082 -138110177 + MLT1A1 LTR MaLR 45 103 -305 5 695 267 31 0 0 chr5 14428595 14428627 -138108632 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 695 7105 239 41 60 chr5 14428883 14430936 -138106323 - Lx7 LINE L1 0 7696 5682 5 695 32840 95 19 4 chr5 14430971 14437149 -138100110 - L1Md_F2 LINE L1 -2 6580 305 5 695 438 193 89 27 chr5 14437138 14437250 -138100009 - Lx7 LINE L1 -1997 5699 5578 5 695 1540 214 216 18 chr5 14437248 14437761 -138099498 - Lx7 LINE L1 -2572 3308 2694 5 695 2075 238 33 26 chr5 14437759 14438299 -138098960 - Lx7 LINE L1 -6739 989 446 5 695 360 189 0 0 chr5 14438299 14438373 -138098886 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 695 932 232 81 8 chr5 14438403 14438651 -138098608 - Lx7 LINE L1 -7297 431 166 5 695 334 206 0 0 chr5 14438646 14438714 -138098545 - L1_Mur3 LINE L1 -7347 365 298 5 695 21 36 0 0 chr5 14438737 14438765 -138098494 + AT_rich Low_complexity Low_complexity 1 28 0 5 695 836 285 27 0 chr5 14439531 14439717 -138097542 + B3 SINE B2 1 191 -25 5 695 26 0 0 0 chr5 14440124 14440150 -138097109 + AT_rich Low_complexity Low_complexity 1 26 0 5 695 1137 62 21 0 chr5 14440915 14441059 -138096200 - B1_Mm SINE Alu 0 147 1 5 695 270 365 0 0 chr5 14441701 14441797 -138095462 - MLT1B LTR MaLR -9 381 286 5 695 315 233 40 14 chr5 14441851 14441925 -138095334 + Lx7 LINE L1 6675 6750 -946 5 695 332 270 14 0 chr5 14441935 14442009 -138095250 - Lx6 LINE L1 -614 6846 6772 5 695 847 294 53 7 chr5 14442014 14442551 -138094708 - Lx7 LINE L1 -1662 6034 5436 5 695 3337 192 53 20 chr5 14442554 14443266 -138093993 - Lx2B LINE L1 -1 6999 6264 5 695 4598 186 72 9 chr5 14443233 14443585 -138093674 - L1_Mur1 LINE L1 -32 5854 5506 5 695 3493 18 2 0 chr5 14443585 14443980 -138093279 - MTA_Mm LTR MaLR 0 396 1 6 695 4598 186 72 9 chr5 14443980 14444554 -138092705 - L1_Mur1 LINE L1 -381 5505 4869 5 695 14378 139 20 31 chr5 14444559 14445838 -138091421 + L1VL4 LINE L1 208 1482 -2077 6 695 1139 75 0 104 chr5 14445838 14446031 -138091228 + L1_Mus2 LINE L1 6392 6564 -2 6 695 14378 109 23 27 chr5 14446031 14447831 -138089428 + L1VL4 LINE L1 1483 3278 -281 6 695 2562 79 3 0 chr5 14447862 14448204 -138089055 - L1_Mm LINE L1 -306 5577 5235 6 695 35 0 0 0 chr5 14449689 14449724 -138087535 + AT_rich Low_complexity Low_complexity 1 35 0 6 695 25 0 0 0 chr5 14450052 14450077 -138087182 + AT_rich Low_complexity Low_complexity 1 25 0 6 695 320 346 9 56 chr5 14450303 14450410 -138086849 + RSINE1 SINE B4 64 165 0 6 695 296 351 44 93 chr5 14450530 14450712 -138086547 + B4 SINE B4 109 281 -11 6 695 279 0 0 0 chr5 14450735 14450766 -138086493 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 695 492 68 0 0 chr5 14450766 14450839 -138086420 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 695 1999 146 53 37 chr5 14451125 14451503 -138085756 + RMER10B LTR ERVL 5 388 -10 6 695 210 37 0 0 chr5 14451802 14451829 -138085430 + (TTG)n Simple_repeat Simple_repeat 3 29 0 6 695 286 280 42 21 chr5 14452038 14452133 -138085126 - L1MEc LINE L1 -6104 296 200 6 695 560 217 9 0 chr5 14452173 14452279 -138084980 + RLTR23 LTR ERV1 324 430 0 6 695 1293 288 10 20 chr5 14452279 14452654 -138084605 - RMER1B Other Other -233 833 364 6 695 222 37 0 0 chr5 14453254 14453281 -138083978 + (GGGGA)n Simple_repeat Simple_repeat 5 31 0 6 695 279 350 124 14 chr5 14453377 14453394 -138083865 - RMER1A Other Other -710 320 304 6 695 567 0 0 0 chr5 14453394 14453457 -138083802 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 695 279 350 124 14 chr5 14453457 14453584 -138083675 - RMER1A Other Other -727 303 161 6 695 28 0 0 0 chr5 14453723 14453751 -138083508 + AT_rich Low_complexity Low_complexity 1 28 0 6 695 3587 87 2 2 chr5 14454482 14454976 -138082283 + L1_Mus1 LINE L1 6074 6567 0 6 695 340 146 22 0 chr5 14455024 14455113 -138082146 + CT-rich Low_complexity Low_complexity 2 92 0 6 695 269 89 22 0 chr5 14455210 14455255 -138082004 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 695 4760 72 6 0 chr5 14456251 14456873 -138080386 - L1_Mm LINE L1 -872 5011 4386 6 695 4610 60 8 3 chr5 14456860 14457449 -138079810 + L1_Mm LINE L1 4993 5586 -297 6 695 7971 47 2 2 chr5 14457449 14458431 -138078828 + L1Md_F2 LINE L1 5587 6568 -14 6 695 258 32 0 0 chr5 14458474 14458505 -138078754 + (A)n Simple_repeat Simple_repeat 1 31 0 6 695 253 304 68 25 chr5 14459117 14459235 -138078024 - MER5B DNA MER1_type -44 134 12 6 695 9657 117 34 4 chr5 14459870 14462157 -138075102 - L1VL2 LINE L1 -1153 2462 105 6 695 21 0 0 0 chr5 14464007 14464028 -138073231 + AT_rich Low_complexity Low_complexity 1 21 0 6 695 398 330 100 64 chr5 14464263 14464593 -138072666 + LTR80A LTR ERVL 242 583 0 6 695 252 100 0 0 chr5 14465263 14465303 -138071956 + (CAA)n Simple_repeat Simple_repeat 3 42 0 6 695 7143 184 21 14 chr5 14465734 14467650 -138069609 - Lx3C LINE L1 -2 6974 5054 6 695 194 244 114 23 chr5 14468761 14468849 -138068410 + L3 LINE CR1 4178 4273 -216 6 695 312 27 0 0 chr5 14469232 14469269 -138067990 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 6 695 549 0 0 0 chr5 14469269 14469329 -138067930 + (TTTC)n Simple_repeat Simple_repeat 1 61 0 6 695 195 129 0 0 chr5 14469805 14469836 -138067423 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 695 315 0 0 0 chr5 14471405 14471440 -138065819 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6 695 205 156 22 22 chr5 14472000 14472046 -138065213 + T-rich Low_complexity Low_complexity 2 47 0 6 695 479 95 14 0 chr5 14472790 14472864 -138064395 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 6 695 2309 140 11 6 chr5 14472864 14473230 -138064029 - RLTR17 LTR ERVK -324 368 1 6 695 1450 222 22 37 chr5 14473230 14473636 -138063623 - RMER3D-int LTR ERVK 0 2842 2443 6 695 4747 219 94 82 chr5 14473656 14475688 -138061571 - RMER3D-int LTR ERVK -483 2359 2 6 695 694 173 160 46 chr5 14475689 14475883 -138061376 - RLTR17 LTR ERVK 0 692 477 6 695 673 264 89 16 chr5 14475882 14476128 -138061131 - MLT1B LTR MaLR -114 276 13 6 695 256 333 51 26 chr5 14478265 14478382 -138058877 - MER45A DNA Tip100 -7 171 52 6 695 994 226 24 5 chr5 14478751 14478956 -138058303 + B3 SINE B2 3 211 -5 6 695 3977 200 77 28 chr5 14479787 14480737 -138056522 - Lx2B LINE L1 -7 6993 5998 6 695 6015 138 26 11 chr5 14480763 14481402 -138055857 - Lx3A LINE L1 -6 6975 6324 6 695 3933 97 32 144 chr5 14481402 14482248 -138055011 + RMER17A LTR ERVK 1 751 0 6 695 6015 138 26 11 chr5 14482248 14482605 -138054654 - Lx3A LINE L1 -658 6323 5964 6 695 2724 126 8 2 chr5 14482606 14483090 -138054169 + Lx3A LINE L1 5470 5953 -1028 6 695 27 0 0 0 chr5 14483390 14483417 -138053842 + AT_rich Low_complexity Low_complexity 1 27 0 6 695 222 105 0 0 chr5 14483740 14483778 -138053481 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 6 695 24 32 0 0 chr5 14484537 14484568 -138052691 + AT_rich Low_complexity Low_complexity 1 31 0 6 695 303 292 0 30 chr5 14486586 14486653 -138050606 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 6 695 256 294 0 14 chr5 14486653 14486722 -138050537 + GA-rich Low_complexity Low_complexity 3 70 0 6 695 24 77 0 0 chr5 14487020 14487072 -138050187 + AT_rich Low_complexity Low_complexity 1 52 0 6 695 273 57 0 0 chr5 14487072 14487107 -138050152 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 695 229 147 0 0 chr5 14487109 14487143 -138050116 + Lx6 LINE L1 6769 6802 -658 6 695 315 0 0 0 chr5 14488069 14488104 -138049155 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6 695 9657 85 39 17 chr5 14488104 14489171 -138048088 - Lx3_Mus LINE L1 -10 6999 5911 6 695 294 29 0 0 chr5 14489171 14489206 -138048053 + (TTA)n Simple_repeat Simple_repeat 2 36 0 6 695 9657 82 27 3 chr5 14489206 14489614 -138047645 - Lx3_Mus LINE L1 -1099 5910 5496 6 695 998 299 109 73 chr5 14490443 14490896 -138046363 - L1MC3 LINE L1 -8 7777 7314 6 695 627 14 0 0 chr5 14490896 14490968 -138046291 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 695 998 299 109 73 chr5 14490968 14491204 -138046055 - L1MC3 LINE L1 -472 7313 7059 6 695 1141 94 0 22 chr5 14491204 14491388 -138045871 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 695 998 299 109 73 chr5 14491388 14491948 -138045311 - L1MC3 LINE L1 -727 7058 6483 6 695 270 106 0 0 chr5 14492594 14492641 -138044618 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 695 661 22 0 21 chr5 14492661 14492792 -138044467 - L1Md_F2 LINE L1 0 6582 6473 6 695 6142 93 25 10 chr5 14492792 14493805 -138043454 - L1VL2 LINE L1 -2503 1112 82 6 695 4412 140 26 99 chr5 14493994 14494120 -138043139 - RLTR13D6 LTR ERVK 0 902 778 6 695 1115 62 0 27 chr5 14494120 14494268 -138042991 - B1_Mm SINE Alu 0 147 4 6 695 4412 140 26 99 chr5 14494268 14495114 -138042145 - RLTR13D6 LTR ERVK -125 777 1 6 695 261 57 0 0 chr5 14495660 14495695 -138041564 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 695 591 194 22 15 chr5 14496015 14496151 -138041108 + L1MC4a LINE L1 7410 7546 -336 6 695 241 77 19 37 chr5 14496874 14496928 -138040331 + (CAAAAA)n Simple_repeat Simple_repeat 3 55 0 6 695 266 350 129 38 chr5 14498253 14498517 -138038742 - L2a LINE L2 -24 3402 3115 6 695 342 0 0 0 chr5 14498646 14498684 -138038575 + (TA)n Simple_repeat Simple_repeat 1 38 0 6 695 384 40 0 0 chr5 14498684 14498734 -138038525 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 695 231 415 24 8 chr5 14498734 14498858 -138038401 - L2a LINE L2 -338 3081 2956 6 695 387 271 0 0 chr5 14498860 14498945 -138038314 - B1_Mur2 SINE Alu -52 97 13 6 695 219 297 87 29 chr5 14498945 14498964 -138038295 - B4 SINE B4 -106 186 77 6 695 190 331 78 35 chr5 14499126 14499267 -138037992 - L2a LINE L2 -1537 1882 1736 6 695 459 52 0 0 chr5 14499861 14499919 -138037340 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 695 569 172 29 47 chr5 14500750 14500921 -138036338 - Lx9 LINE L1 0 7644 7477 1 695 210 273 18 0 chr5 14500921 14500976 -138036283 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 2 695 1039 107 18 0 chr5 14502451 14502619 -138034640 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 3 695 958 146 29 0 chr5 14502912 14503083 -138034176 - URR1B DNA MER1_type 0 225 50 4 695 4026 201 65 65 chr5 14503579 14504469 -138032790 + RMER19B LTR ERVK 1 890 -12 5 695 2946 245 40 93 chr5 14504491 14505315 -138031944 - RMER19B LTR ERVK -122 780 1 6 695 1805 164 54 6 chr5 14505352 14505683 -138031576 - MurERV4_19-int LTR ERVK -2928 2852 2506 7 695 5064 67 4 3 chr5 14507073 14508027 -138029232 - L1Md_F2 LINE L1 -397 6185 5232 8 695 2988 69 20 3 chr5 14508027 14508418 -138028841 + L1_Mus1 LINE L1 6169 6566 -1 9 695 231 262 0 0 chr5 14510048 14510109 -138027150 - B1F SINE Alu -1 148 88 1 695 209 264 0 0 chr5 14511237 14511290 -138025969 + (CAT)n Simple_repeat Simple_repeat 3 55 0 1 695 670 143 0 0 chr5 14512302 14512400 -138024859 + RMER6A LTR ERVK 1 98 -622 1 695 1434 198 87 17 chr5 14512403 14512854 -138024405 + RMER6A LTR ERVK 432 720 0 1 695 312 277 561 15 chr5 14512904 14512923 -138024336 + ID_B1 SINE B4 20 217 -4 1 695 268 287 65 65 chr5 14512923 14513031 -138024228 + PB1D7 SINE Alu 6 113 -7 1 695 221 263 43 17 chr5 14514834 14514950 -138022309 + (CGCGG)n Simple_repeat Simple_repeat 3 121 0 1 695 275 341 24 0 chr5 14517451 14517536 -138019723 + MIRc SINE MIR 108 194 -74 1 695 189 0 0 0 chr5 14517555 14517576 -138019683 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 695 182 91 73 0 chr5 14518359 14518414 -138018845 + T-rich Low_complexity Low_complexity 3 61 0 1 695 248 294 29 0 chr5 14519632 14519644 -138017615 - ID SINE ID -143 81 12 1 695 248 268 0 0 chr5 14519644 14519700 -138017559 - ID4 SINE ID -16 67 12 2 695 286 172 39 39 chr5 14521856 14522064 -138015195 + (CCCCAG)n Simple_repeat Simple_repeat 1 208 0 2 695 318 301 99 57 chr5 14522708 14522721 -138014538 - B1F SINE Alu -2 147 138 2 695 216 0 0 0 chr5 14522721 14522745 -138014514 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2 695 318 301 99 57 chr5 14522745 14522872 -138014387 - B1F SINE Alu -12 137 1 2 695 5193 167 21 9 chr5 14523334 14524290 -138012969 - L1_Mur3 LINE L1 -5 5875 4909 2 695 1409 70 0 21 chr5 14524709 14524899 -138012360 + B2_Mm2 SINE B2 1 186 -9 2 695 279 0 0 0 chr5 14525351 14525382 -138011877 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 695 25 51 0 0 chr5 14525676 14525715 -138011544 + AT_rich Low_complexity Low_complexity 1 39 0 2 695 463 331 12 62 chr5 14525973 14526134 -138011125 + RSINE1 SINE B4 2 154 -11 2 695 201 167 0 0 chr5 14526674 14526710 -138010549 + A-rich Low_complexity Low_complexity 1 36 0 2 695 405 0 0 0 chr5 14526859 14526904 -138010355 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 695 258 32 0 0 chr5 14526904 14526934 -138010325 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 695 434 219 5 33 chr5 14526936 14527120 -138010139 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 695 189 26 79 0 chr5 14527251 14527289 -138009970 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3 695 186 43 0 0 chr5 14527776 14527799 -138009460 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 695 416 301 102 40 chr5 14527818 14528043 -138009216 - L2a LINE L2 -9 3417 3179 3 695 480 311 53 0 chr5 14528113 14528245 -138009014 + RSINE1 SINE B4 2 140 -25 3 695 467 261 7 27 chr5 14530151 14530297 -138006962 - Lx4A LINE L1 -15 7043 6901 3 695 21 36 0 0 chr5 14530784 14530812 -138006447 + AT_rich Low_complexity Low_complexity 1 28 0 3 695 25 31 0 0 chr5 14530979 14531011 -138006248 + AT_rich Low_complexity Low_complexity 1 32 0 3 695 24 0 0 0 chr5 14533652 14533676 -138003583 + AT_rich Low_complexity Low_complexity 1 24 0 4 695 2311 330 57 20 chr5 14534143 14535182 -138002077 - Lx8 LINE L1 -164 7309 6233 4 695 327 154 0 0 chr5 14535867 14535932 -138001327 + GA-rich Low_complexity Low_complexity 1 65 0 4 695 402 21 0 0 chr5 14536215 14536262 -138000997 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 695 1611 40 0 0 chr5 14536695 14536896 -138000363 - L1Md_A LINE L1 -2 6580 6380 4 695 225 94 0 0 chr5 14537453 14537485 -137999774 + (T)n Simple_repeat Simple_repeat 1 32 0 4 695 276 206 31 16 chr5 14537795 14537859 -137999400 + ID4_ SINE ID 4 68 -15 4 695 25 0 0 0 chr5 14538068 14538093 -137999166 + AT_rich Low_complexity Low_complexity 1 25 0 4 695 223 215 385 0 chr5 14538200 14538265 -137998994 + PB1D7 SINE Alu 20 109 -8 4 695 251 212 15 0 chr5 14541590 14541656 -137995603 + Lx4A LINE L1 6991 7057 -1 4 695 278 248 44 35 chr5 14543058 14543171 -137994088 + (TATATG)n Simple_repeat Simple_repeat 3 116 0 5 695 474 245 9 9 chr5 14545869 14545976 -137991283 - MTC LTR MaLR -6 415 309 5 695 297 0 0 0 chr5 14545977 14546010 -137991249 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 695 606 93 0 0 chr5 14546010 14546095 -137991164 + (TA)n Simple_repeat Simple_repeat 1 86 0 5 695 396 0 0 0 chr5 14546106 14546150 -137991109 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 695 812 241 4 96 chr5 14546253 14546492 -137990767 - MTD LTR MaLR -9 412 196 5 86 38945 42 12 3 chr5 14546492 14552743 -137984516 - L1Md_A LINE L1 -1 6581 275 5 696 846 264 21 0 chr5 14552751 14552944 -137984315 - MTD LTR MaLR -213 206 10 5 696 23 33 0 0 chr5 14553140 14553170 -137984089 + AT_rich Low_complexity Low_complexity 1 30 0 5 696 351 119 0 0 chr5 14553253 14553320 -137983939 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 696 21 0 0 0 chr5 14554241 14554262 -137982997 + AT_rich Low_complexity Low_complexity 1 21 0 5 696 450 127 0 0 chr5 14554377 14554448 -137982811 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 696 297 75 0 0 chr5 14554472 14554512 -137982747 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 6 696 1451 237 76 9 chr5 14554518 14554937 -137982322 - Lx2B LINE L1 -145 6855 6154 6 696 2295 177 172 33 chr5 14555078 14555338 -137981921 + RMER6C LTR ERVK 2 332 -358 6 696 288 0 0 0 chr5 14555338 14555370 -137981889 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 696 2295 177 172 33 chr5 14555370 14555712 -137981547 + RMER6C LTR ERVK 333 688 -2 6 696 4359 58 0 18 chr5 14556178 14556743 -137980516 - L1Md_F2 LINE L1 0 6582 6028 6 696 21 71 0 0 chr5 14556838 14556880 -137980379 + AT_rich Low_complexity Low_complexity 1 42 0 6 696 645 299 93 21 chr5 14556992 14557282 -137979977 - LTR40c LTR ERVL -108 357 47 6 696 366 61 0 0 chr5 14557492 14557541 -137979718 + (TTTTA)n Simple_repeat Simple_repeat 5 53 0 6 696 809 149 14 0 chr5 14557542 14557683 -137979576 - Lx4A LINE L1 -14 7044 6902 6 696 1383 176 41 0 chr5 14557704 14557948 -137979311 - Lx4A LINE L1 -243 6815 6562 6 696 542 236 26 42 chr5 14558117 14558321 -137978938 - Lx7 LINE L1 -6 7690 7544 7 696 218 304 94 42 chr5 14559604 14559700 -137977559 + MIRb SINE MIR 11 111 -157 7 696 567 253 20 7 chr5 14560834 14560985 -137976274 - RSINE1 SINE B4 -10 155 3 7 696 254 259 80 72 chr5 14561128 14561253 -137976006 + L2a LINE L2 3121 3246 -180 7 696 215 345 34 22 chr5 14562693 14562782 -137974477 - RSINE1 SINE B4 -65 100 11 7 696 316 262 12 12 chr5 14563121 14563202 -137974057 + Lx8 LINE L1 6646 6726 -747 7 696 270 240 39 0 chr5 14563217 14563321 -137973938 + (TA)n Simple_repeat Simple_repeat 2 109 0 7 696 2265 295 99 10 chr5 14563326 14564137 -137973122 - Lx8 LINE L1 -151 7322 6440 7 696 396 276 54 16 chr5 14564146 14564275 -137972984 + Lx8 LINE L1 6316 6449 -1024 7 696 242 250 88 0 chr5 14564731 14564799 -137972460 - MLT1E1A LTR MaLR -547 133 60 7 696 26 50 0 0 chr5 14565496 14565536 -137971723 + AT_rich Low_complexity Low_complexity 1 40 0 7 696 256 354 0 0 chr5 14566157 14566239 -137971020 - ID4_ SINE ID 0 83 2 8 696 241 290 14 0 chr5 14566239 14566308 -137970951 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 696 261 0 0 0 chr5 14566359 14566388 -137970871 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 8 696 288 72 0 24 chr5 14566407 14566473 -137970786 - L1_Mus2 LINE L1 -1 6583 6522 8 696 1123 108 0 0 chr5 14566465 14566632 -137970627 + L1_Mm LINE L1 3322 3488 -2395 8 696 266 336 33 66 chr5 14566649 14566770 -137970489 - PB1D9 SINE Alu -3 117 1 8 696 615 313 21 42 chr5 14566770 14566860 -137970399 - B4A SINE B4 -206 86 1 8 696 24 32 0 0 chr5 14567470 14567501 -137969758 + AT_rich Low_complexity Low_complexity 1 31 0 8 696 253 24 73 0 chr5 14569267 14569308 -137967951 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 8 696 1081 61 0 39 chr5 14569308 14569461 -137967798 - B1_Mus2 SINE Alu 0 147 1 8 696 258 136 0 0 chr5 14569576 14569620 -137967639 + (TA)n Simple_repeat Simple_repeat 1 44 0 9 696 378 0 0 0 chr5 14570494 14570536 -137966723 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 9 696 583 170 10 0 chr5 14570536 14570636 -137966623 - B1_Mus1 SINE Alu -9 139 39 9 696 21 95 0 0 chr5 14570751 14570814 -137966445 + AT_rich Low_complexity Low_complexity 1 63 0 9 696 23 0 0 0 chr5 14570876 14570899 -137966360 + AT_rich Low_complexity Low_complexity 1 23 0 9 696 1908 92 8 8 chr5 14572975 14573238 -137964021 - ORR1A2 LTR MaLR 0 327 65 9 696 1578 232 98 8 chr5 14573359 14573740 -137963519 - MTD LTR MaLR -15 404 1 9 696 21 0 0 0 chr5 14573884 14573905 -137963354 + AT_rich Low_complexity Low_complexity 1 21 0 9 696 360 0 0 0 chr5 14573911 14573951 -137963308 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 696 220 307 32 73 chr5 14573981 14574104 -137963155 + ID_B1 SINE B4 77 194 -30 9 696 3650 191 35 28 chr5 14574163 14574917 -137962342 - Lx4B LINE L1 -1 7057 6299 1 696 1712 173 15 4 chr5 14574912 14575251 -137962008 + Lx5 LINE L1 5796 6131 -845 1 696 2959 236 30 71 chr5 14575445 14576622 -137960637 + RMER1B Other Other 37 1061 -5 1 696 211 354 42 17 chr5 14577312 14577430 -137959829 + MIR SINE MIR 19 139 -123 1 696 590 90 37 22 chr5 14577503 14577639 -137959620 + (TCTA)n Simple_repeat Simple_repeat 3 140 0 1 696 292 160 149 169 chr5 14578383 14578496 -137958763 - Lx9 LINE L1 -2 7642 7562 1 696 4161 47 2 0 chr5 14578496 14579003 -137958256 - L1Md_F2 LINE L1 -1 6581 6074 1 696 292 160 149 169 chr5 14579003 14579048 -137958211 - Lx9 LINE L1 -83 7561 7491 1 696 456 19 0 0 chr5 14579048 14579101 -137958158 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 696 450 0 0 0 chr5 14579102 14579152 -137958107 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 696 292 160 149 169 chr5 14579152 14579238 -137958021 - Lx9 LINE L1 -154 7490 7400 1 696 21 36 0 0 chr5 14579743 14579771 -137957488 + AT_rich Low_complexity Low_complexity 1 28 0 1 696 23 68 0 0 chr5 14580471 14580515 -137956744 + AT_rich Low_complexity Low_complexity 1 44 0 1 696 477 0 0 0 chr5 14581355 14581408 -137955851 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 696 24 53 0 0 chr5 14582597 14582635 -137954624 + AT_rich Low_complexity Low_complexity 1 38 0 1 696 208 192 27 14 chr5 14583953 14584027 -137953232 + T-rich Low_complexity Low_complexity 3 77 0 1 696 720 201 7 7 chr5 14584843 14584978 -137952281 + B1_Mus1 SINE Alu 14 148 0 1 696 221 100 46 77 chr5 14585056 14585121 -137952138 + T-rich Low_complexity Low_complexity 2 64 0 1 696 1449 71 0 25 chr5 14585423 14585625 -137951634 + MTB LTR MaLR 1 197 -210 1 696 6624 84 26 1 chr5 14585656 14586549 -137950710 + L1Md_F2 LINE L1 5587 6501 -81 1 696 1378 98 20 0 chr5 14586546 14586749 -137950510 - MusHAL1 LINE L1 -2886 468 262 1 696 318 127 0 16 chr5 14586749 14586813 -137950446 + L1Md_F2 LINE L1 6506 6568 -16 1 696 1577 80 5 0 chr5 14586813 14587025 -137950234 + MTB LTR MaLR 188 400 0 1 696 21 36 0 0 chr5 14587133 14587161 -137950098 + AT_rich Low_complexity Low_complexity 1 28 0 1 696 11837 81 45 3 chr5 14587676 14589883 -137947376 + L1VL4 LINE L1 549 2870 -1044 1 696 1111 106 0 22 chr5 14589883 14590067 -137947192 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 696 11837 114 17 34 chr5 14590067 14591419 -137945840 + L1VL4 LINE L1 2865 3911 -3 1 696 209 296 0 0 chr5 14592637 14592691 -137944568 + CT-rich Low_complexity Low_complexity 4 57 0 1 696 750 335 65 0 chr5 14592731 14592994 -137944265 - B4A SINE B4 -2 290 11 1 696 238 318 22 11 chr5 14593498 14593587 -137943672 + MIRb SINE MIR 175 264 -4 1 696 465 19 0 0 chr5 14593951 14594005 -137943254 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 696 2425 71 12 3 chr5 14594025 14594350 -137942909 - L1_Mus1 LINE L1 0 6567 6240 1 696 457 289 25 31 chr5 14595740 14595901 -137941358 - RSINE1 SINE B4 -2 163 4 1 696 1422 282 27 32 chr5 14596085 14596459 -137940800 - MTEa LTR MaLR -2 377 6 1 696 1503 204 122 9 chr5 14596819 14597140 -137940119 + MTD LTR MaLR 63 419 0 1 696 42 20 0 0 chr5 14597614 14597663 -137939596 + AT_rich Low_complexity Low_complexity 1 49 0 1 696 374 256 53 113 chr5 14598514 14598796 -137938463 - L1MC LINE L1 -2139 4007 3743 1 696 396 0 0 0 chr5 14599255 14599299 -137937960 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 696 231 314 0 0 chr5 14600097 14600148 -137937111 + B1F2 SINE Alu 6 56 -93 1 696 1033 287 107 47 chr5 14600311 14600355 -137936904 + MT2A LTR ERVL 1 39 -494 1 696 309 51 0 0 chr5 14600355 14600394 -137936865 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 696 1033 287 107 47 chr5 14600394 14600467 -137936792 + MT2A LTR ERVL 40 104 -429 1 696 431 122 0 0 chr5 14600467 14600549 -137936710 - L1_Mus3 LINE L1 0 6638 6557 1 696 1033 288 101 57 chr5 14600549 14600920 -137936339 + MT2A LTR ERVL 105 601 0 1 696 1203 59 88 0 chr5 14601078 14601248 -137936011 - L1Md_F2 LINE L1 -13 6569 6385 1 696 207 0 0 0 chr5 14601444 14601467 -137935792 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 696 243 0 0 0 chr5 14601467 14601493 -137935766 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 696 183 288 37 12 chr5 14601640 14601721 -137935538 + MIRb SINE MIR 184 266 -2 1 696 220 175 31 16 chr5 14602562 14602617 -137934642 + A-rich Low_complexity Low_complexity 5 60 0 1 696 210 37 0 0 chr5 14602617 14602644 -137934615 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1 696 545 300 38 10 chr5 14602710 14602919 -137934340 + B3 SINE B2 2 216 0 1 696 280 274 114 23 chr5 14603292 14603423 -137933836 + MLT1B LTR MaLR 1 143 -247 1 696 448 218 65 0 chr5 14603423 14603547 -137933712 - Lx2A1 LINE L1 -694 6314 6183 1 696 3762 130 43 2 chr5 14603547 14604171 -137933088 + Lx2A1 LINE L1 6356 7005 -3 1 696 378 0 0 0 chr5 14604489 14604531 -137932728 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 696 758 263 22 14 chr5 14605276 14605473 -137931786 - B3A SINE B2 -4 212 10 1 696 710 170 27 20 chr5 14605473 14605623 -137931636 - RLTR26 LTR ERVK 0 642 492 1 696 1241 146 16 16 chr5 14605650 14605982 -137931277 - RLTR26 LTR ERVK -247 395 1 1 696 237 304 0 0 chr5 14606639 14606708 -137930551 - L1MA7 LINE L1 -20 6271 6203 1 696 429 285 25 49 chr5 14606745 14606948 -137930311 + L1MA7 LINE L1 5956 6153 -138 1 696 432 0 0 0 chr5 14607082 14607130 -137930129 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 696 369 284 8 171 chr5 14607651 14607758 -137929501 - B3 SINE B2 -4 212 131 1 696 378 0 0 0 chr5 14607758 14607800 -137929459 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 696 419 254 17 70 chr5 14607800 14607943 -137929316 - B3A SINE B2 -86 130 3 1 696 1959 137 29 23 chr5 14609215 14609559 -137927700 + Lx3A LINE L1 6634 6979 -2 1 696 1173 70 0 0 chr5 14609560 14609716 -137927543 + (GAA)n Simple_repeat Simple_repeat 3 158 0 1 696 267 293 0 89 chr5 14610028 14610129 -137927130 - MTEb LTR MaLR -287 92 1 1 696 524 336 32 46 chr5 14610619 14610965 -137926294 + L1MB8 LINE L1 768 1108 -6226 1 696 1045 264 101 18 chr5 14611208 14611805 -137925454 + L1MB8 LINE L1 5071 5716 -1290 1 696 313 274 137 0 chr5 14611833 14611928 -137925331 + MER45A DNA Tip100 70 177 -1 1 696 9182 44 6 3 chr5 14612021 14613849 -137923410 - L1Md_F2 LINE L1 -8 6574 4743 1 696 3349 89 0 0 chr5 14613847 14614317 -137922942 + L1_Mm LINE L1 2682 3151 -2732 1 696 513 324 153 33 chr5 14614829 14615471 -137921788 + L1MB8 LINE L1 6318 7036 -2 1 696 1181 247 47 31 chr5 14615619 14615937 -137921322 - Lx9 LINE L1 -236 7408 7086 1 696 229 195 0 0 chr5 14618060 14618101 -137919158 + L1MA4 LINE L1 5529 5569 -734 1 696 1885 86 14 38 chr5 14618336 14618625 -137918634 + L1_Mus4 LINE L1 6333 6614 -22 1 696 2547 87 6 3 chr5 14618620 14618965 -137918294 + L1_Mus4 LINE L1 5864 6209 -427 1 696 1296 117 9 14 chr5 14618965 14619182 -137918077 + L1_Mus4 LINE L1 6419 6634 -2 1 696 242 263 26 0 chr5 14619240 14619316 -137917943 + L1MA4 LINE L1 5858 5935 -365 1 696 227 333 60 10 chr5 14619745 14619845 -137917414 + MamRep605 Unknown Unknown 24 128 -748 1 696 265 321 174 12 chr5 14620293 14620460 -137916799 - MIR SINE MIR -49 213 20 1 696 429 81 0 0 chr5 14622534 14622596 -137914663 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 696 182 159 0 43 chr5 14622620 14622666 -137914593 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 1 696 215 250 0 0 chr5 14622787 14622839 -137914420 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1 696 354 387 26 0 chr5 14622840 14622995 -137914264 - RSINE1 SINE B4 -4 161 3 1 696 571 335 97 31 chr5 14623015 14623335 -137913924 + MLT1A0 LTR MaLR 1 341 -24 1 696 3175 144 81 60 chr5 14623352 14623830 -137913429 - RLTR26 LTR ERVK 0 642 181 1 696 558 0 0 0 chr5 14623830 14623892 -137913367 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 696 351 0 0 0 chr5 14623892 14623930 -137913329 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 696 3175 144 81 60 chr5 14623930 14624079 -137913180 - RLTR26 LTR ERVK -462 180 4 1 696 342 115 0 0 chr5 14624575 14624627 -137912632 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 696 524 340 0 19 chr5 14626618 14626780 -137910479 + RSINE1 SINE B4 5 163 -2 1 696 1236 315 144 9 chr5 14627018 14627595 -137909664 - Lx7 LINE L1 -400 7296 6642 1 696 382 248 17 0 chr5 14627736 14627853 -137909406 - Lx9 LINE L1 -3 7641 7523 1 696 22 56 0 0 chr5 14627985 14628021 -137909238 + AT_rich Low_complexity Low_complexity 1 36 0 1 696 180 0 0 0 chr5 14628081 14628101 -137909158 + (T)n Simple_repeat Simple_repeat 1 20 0 1 696 308 238 60 0 chr5 14628207 14628291 -137908968 - Lx9 LINE L1 -8 7636 7548 1 696 369 0 0 0 chr5 14628313 14628354 -137908905 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 696 2084 247 47 6 chr5 14628358 14628851 -137908408 - Lx9 LINE L1 -171 7473 6961 1 696 700 277 120 14 chr5 14629177 14629543 -137907716 - L1M2 LINE L1 -574 5726 5322 1 696 237 286 112 45 chr5 14629634 14629920 -137907339 - L1M2 LINE L1 -798 5345 5041 1 696 321 228 31 52 chr5 14630078 14630175 -137907084 - L1MCa LINE L1 -5994 514 420 1 696 30 83 0 0 chr5 14630388 14630460 -137906799 + AT_rich Low_complexity Low_complexity 1 72 0 1 696 380 279 13 3 chr5 14630720 14630831 -137906428 + PB1D7 SINE Alu 1 114 -6 1 696 343 291 209 51 chr5 14630936 14631171 -137906088 - B4A SINE B4 -18 274 3 1 696 1748 178 0 59 chr5 14632177 14632518 -137904741 - ORR1A4 LTR MaLR -8 321 1 1 696 3170 119 20 39 chr5 14632518 14633027 -137904232 - MT2B LTR ERVL -95 506 8 1 696 1133 184 98 13 chr5 14633122 14633358 -137903901 - RLTR22_Mur LTR ERVK 0 1848 1593 1 696 694 139 9 0 chr5 14633692 14633807 -137903452 - RLTR22_Mur LTR ERVK -1043 805 690 1 696 11401 18 1 0 chr5 14633816 14635136 -137902123 + L1Md_A LINE L1 4265 5586 -297 1 696 8374 26 9 3 chr5 14635137 14636126 -137901133 + L1Md_A LINE L1 5588 6582 0 1 696 1372 191 9 92 chr5 14636127 14636284 -137900975 - RLTR22_Mur LTR ERVK -1187 661 533 1 696 207 0 0 0 chr5 14636284 14636307 -137900952 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 696 1153 28 14 0 chr5 14636307 14636450 -137900809 - B1_Mm SINE Alu -2 145 1 1 696 1372 191 9 92 chr5 14636450 14636626 -137900633 - RLTR22_Mur LTR ERVK -1316 532 356 1 696 565 281 7 0 chr5 14636630 14636783 -137900476 + Lx6 LINE L1 7130 7283 -177 1 696 26 0 0 0 chr5 14636783 14636809 -137900450 + AT_rich Low_complexity Low_complexity 1 26 0 1 696 195 235 0 0 chr5 14636958 14637009 -137900250 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 696 817 316 61 29 chr5 14637036 14637381 -137899878 - Lx8 LINE L1 -736 6737 6382 1 696 251 156 31 0 chr5 14637717 14637781 -137899478 + (CAGAGA)n Simple_repeat Simple_repeat 2 67 0 1 696 25 0 0 0 chr5 14637783 14637808 -137899451 + AT_rich Low_complexity Low_complexity 1 25 0 1 696 27 49 0 0 chr5 14638020 14638061 -137899198 + AT_rich Low_complexity Low_complexity 1 41 0 2 696 21 0 0 0 chr5 14638139 14638160 -137899099 + AT_rich Low_complexity Low_complexity 1 21 0 2 696 1018 287 90 9 chr5 14639255 14639600 -137897659 - ORR1D1 LTR MaLR 0 374 2 2 696 2497 330 62 45 chr5 14639694 14641012 -137896247 + Lx8 LINE L1 6133 7473 0 2 696 230 390 19 28 chr5 14641365 14641473 -137895786 + L4 LINE RTE 1224 1330 -699 2 696 3251 23 23 0 chr5 14642653 14643040 -137894219 + MTA_Mm LTR MaLR 1 396 0 2 696 9137 22 20 0 chr5 14643040 14644116 -137893143 + MTA_Mm-int LTR MaLR 1 1098 0 2 696 3408 20 8 0 chr5 14644116 14644509 -137892750 + MTA_Mm LTR MaLR 1 396 0 2 696 641 313 128 34 chr5 14644575 14645042 -137892217 + Lx9 LINE L1 6669 7179 -465 2 696 414 39 0 0 chr5 14645109 14645161 -137892098 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 696 22 35 0 0 chr5 14645605 14645634 -137891625 + AT_rich Low_complexity Low_complexity 1 29 0 2 696 771 358 149 57 chr5 14645769 14647027 -137890232 - MTE-int LTR MaLR -206 1374 1 2 696 566 118 11 0 chr5 14647473 14647566 -137889693 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 2 696 334 31 45 30 chr5 14647573 14647639 -137889620 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 2 696 228 300 48 40 chr5 14647730 14647855 -137889404 - L1M2 LINE L1 -4326 2523 2398 2 696 533 289 91 15 chr5 14649679 14649876 -137887383 + B3 SINE B2 1 212 -4 2 696 24 0 0 0 chr5 14650153 14650177 -137887082 + AT_rich Low_complexity Low_complexity 1 24 0 2 696 24 77 0 0 chr5 14650512 14650564 -137886695 + AT_rich Low_complexity Low_complexity 1 52 0 2 696 963 313 121 26 chr5 14650958 14651454 -137885805 + Lx8 LINE L1 6139 6681 -792 2 696 231 281 132 0 chr5 14651451 14651565 -137885694 + Lx8 LINE L1 7345 7473 0 2 696 1132 306 74 35 chr5 14651654 14652052 -137885207 - L1_Rod LINE L1 -13 5834 5429 2 696 207 0 0 0 chr5 14652052 14652075 -137885184 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 696 1132 311 73 34 chr5 14652075 14652466 -137884793 - L1_Rod LINE L1 -429 5451 5043 2 696 180 163 0 0 chr5 14653161 14653204 -137884055 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 696 195 42 0 0 chr5 14653205 14653229 -137884030 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 696 812 354 13 40 chr5 14653367 14653667 -137883592 + B4 SINE B4 1 292 0 2 696 249 262 15 15 chr5 14653686 14653752 -137883507 + GA-rich Low_complexity Low_complexity 1 66 0 2 696 510 257 42 7 chr5 14653985 14654125 -137883134 + B1_Mur1 SINE Alu 10 149 0 2 696 216 279 25 0 chr5 14654479 14654558 -137882701 + MIRb SINE MIR 127 207 -61 2 696 1763 132 5 150 chr5 14655054 14655427 -137881832 - ORR1A4 LTR MaLR -10 319 1 2 696 415 309 101 103 chr5 14655780 14656280 -137880979 - RMER13A LTR ERVK -61 566 21 2 696 1949 144 114 30 chr5 14656286 14656724 -137880535 + IAPLTR2_Mm LTR ERVK 1 475 0 2 696 1155 291 57 46 chr5 14657263 14657630 -137879629 + MTE2b LTR MaLR 3 373 -6 2 696 564 81 0 0 chr5 14657673 14657760 -137879499 + (TC)n Simple_repeat Simple_repeat 2 88 0 2 696 3954 145 22 13 chr5 14657807 14658484 -137878775 + Lx LINE L1 5972 6654 0 2 696 195 42 0 0 chr5 14658484 14658508 -137878751 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 2 696 374 85 17 0 chr5 14658506 14658565 -137878694 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 696 596 151 0 53 chr5 14658695 14658884 -137878375 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 696 30 27 0 0 chr5 14659011 14659048 -137878211 + AT_rich Low_complexity Low_complexity 1 37 0 2 696 464 329 22 0 chr5 14659675 14659812 -137877447 - ID_B1 SINE B4 -3 221 82 2 696 556 308 17 56 chr5 14660118 14660297 -137876962 + B3A SINE B2 3 174 -24 2 696 1048 259 64 60 chr5 14661496 14661931 -137875328 - Lx9 LINE L1 -69 7575 7139 2 696 1889 321 58 11 chr5 14661933 14662794 -137874465 - Lx7 LINE L1 -19 7454 6539 2 696 8496 26 0 8 chr5 14663130 14663799 -137873460 - L1Md_A LINE L1 -1 6581 5918 2 696 3466 20 2 0 chr5 14663799 14664194 -137873065 - MTA_Mm LTR MaLR 0 396 1 2 696 9033 31 10 1 chr5 14664194 14665282 -137871977 - MTA_Mm-int LTR MaLR 0 1098 1 2 696 3477 18 2 0 chr5 14665282 14665677 -137871582 - MTA_Mm LTR MaLR 0 396 1 2 696 8496 18 0 0 chr5 14665677 14666559 -137870700 - L1Md_A LINE L1 -665 5917 5036 2 696 753 225 0 7 chr5 14666988 14667131 -137870128 + B1_Mus2 SINE Alu 5 146 -1 2 696 602 49 12 0 chr5 14667132 14667214 -137870045 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 2 696 1123 55 0 40 chr5 14668630 14668782 -137868477 - B1_Mus2 SINE Alu 0 147 2 2 696 24 32 0 0 chr5 14668792 14668823 -137868436 + AT_rich Low_complexity Low_complexity 1 31 0 2 696 186 222 0 0 chr5 14669959 14670013 -137867246 + (TTA)n Simple_repeat Simple_repeat 2 55 0 2 696 23 33 0 0 chr5 14670411 14670441 -137866818 + AT_rich Low_complexity Low_complexity 1 30 0 2 696 378 0 0 0 chr5 14670571 14670613 -137866646 + (TGAG)n Simple_repeat Simple_repeat 4 45 0 2 696 753 114 0 0 chr5 14670803 14670917 -137866342 + (TTTC)n Simple_repeat Simple_repeat 4 117 0 2 696 375 23 0 0 chr5 14671470 14671514 -137865745 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 696 207 0 0 0 chr5 14671514 14671536 -137865723 + (GA)n Simple_repeat Simple_repeat 1 23 0 2 696 260 298 37 37 chr5 14674435 14674543 -137862716 + B4A SINE B4 181 288 -4 2 696 231 152 0 0 chr5 14674544 14674590 -137862669 + GA-rich Low_complexity Low_complexity 1 46 0 2 696 294 132 0 0 chr5 14678134 14678187 -137859072 + (TCC)n Simple_repeat Simple_repeat 1 53 0 2 697 27 0 0 0 chr5 14683275 14683302 -137853957 + AT_rich Low_complexity Low_complexity 1 27 0 2 697 13316 163 32 60 chr5 14683430 14687534 -137849725 - Lx5 LINE L1 0 7050 3057 2 697 5106 224 41 12 chr5 14687556 14688673 -137848586 - Lx7 LINE L1 -458 7238 6090 2 697 1137 226 63 56 chr5 14688673 14688992 -137848267 - ORR1C2 LTR MaLR 0 384 64 2 697 207 219 0 0 chr5 14689400 14689441 -137847818 + T-rich Low_complexity Low_complexity 3 43 0 2 697 183 162 0 0 chr5 14691005 14691042 -137846217 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 697 432 0 0 0 chr5 14691088 14691136 -137846123 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 697 2214 178 8 61 chr5 14691344 14691834 -137845425 - RMER4A LTR ERVK 0 466 3 2 697 287 317 39 10 chr5 14692652 14692754 -137844505 - B1F SINE Alu -23 126 22 2 697 378 0 0 0 chr5 14692961 14693003 -137844256 + (A)n Simple_repeat Simple_repeat 1 42 0 2 697 1407 293 79 41 chr5 14694284 14695091 -137842168 - L1MB5 LINE L1 -28 6146 5309 2 697 199 159 104 83 chr5 14695582 14695630 -137841629 + L4 LINE RTE 1540 1588 -441 2 697 222 118 0 0 chr5 14696239 14696273 -137840986 + (ATG)n Simple_repeat Simple_repeat 3 36 0 2 697 411 45 45 0 chr5 14696632 14696698 -137840561 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 697 4766 178 42 13 chr5 14696712 14696819 -137840440 - Lx4B LINE L1 -1 7057 6941 2 697 471 18 0 0 chr5 14696819 14696875 -137840384 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 697 4766 172 38 11 chr5 14696875 14697813 -137839446 - Lx4B LINE L1 -118 6940 5888 2 697 1743 116 81 0 chr5 14697797 14698107 -137839152 + Lx4A LINE L1 5987 6321 -737 2 697 338 274 26 52 chr5 14698097 14698251 -137839008 - L1VL4 LINE L1 -5989 993 844 2 697 1757 314 56 36 chr5 14698562 14699448 -137837811 - Lx9 LINE L1 -206 7438 6535 2 697 32 0 0 0 chr5 14699779 14699811 -137837448 + AT_rich Low_complexity Low_complexity 1 32 0 2 697 361 305 8 25 chr5 14699880 14700001 -137837258 + Lx7 LINE L1 7175 7293 -403 2 697 1062 244 4 120 chr5 14700174 14700440 -137836819 - RLTR25B LTR ERVK -793 235 1 2 697 246 192 0 0 chr5 14701435 14701487 -137835772 + (ATGGTG)n Simple_repeat Simple_repeat 5 56 0 2 697 24 32 0 0 chr5 14702320 14702351 -137834908 + AT_rich Low_complexity Low_complexity 1 31 0 2 697 217 400 35 24 chr5 14702508 14702677 -137834582 + MIRb SINE MIR 72 242 -26 2 697 278 301 78 57 chr5 14703300 14703441 -137833818 + ID_B1 SINE B4 81 224 0 2 697 23 0 0 0 chr5 14703888 14703911 -137833348 + AT_rich Low_complexity Low_complexity 1 23 0 2 697 444 294 22 0 chr5 14704602 14704738 -137832521 + MTE2b LTR MaLR 241 379 0 2 697 313 133 0 26 chr5 14705841 14705918 -137831341 + (TTA)n Simple_repeat Simple_repeat 2 76 0 2 697 21 0 0 0 chr5 14706010 14706031 -137831228 + AT_rich Low_complexity Low_complexity 1 21 0 2 697 473 32 16 0 chr5 14707203 14707266 -137829993 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 697 306 352 28 35 chr5 14707421 14707565 -137829694 - L3 LINE CR1 -1123 3366 3224 2 697 1177 56 0 0 chr5 14708360 14708504 -137828755 + B1_Mus1 SINE Alu 5 148 0 2 697 225 0 0 0 chr5 14708504 14708529 -137828730 + (A)n Simple_repeat Simple_repeat 1 25 0 2 697 265 41 82 0 chr5 14708623 14708672 -137828587 + (TCTCTG)n Simple_repeat Simple_repeat 6 58 0 2 697 853 318 17 20 chr5 14708703 14708995 -137828264 - B4A SINE B4 0 292 2 2 697 303 93 0 0 chr5 14709007 14709050 -137828209 + (T)n Simple_repeat Simple_repeat 1 43 0 2 697 1120 95 0 0 chr5 14709050 14709197 -137828062 - B1_Mus2 SINE Alu 0 147 1 2 697 1238 282 86 12 chr5 14710384 14710793 -137826466 - Lx6 LINE L1 0 7460 7022 2 697 317 354 0 0 chr5 14710927 14711009 -137826250 + B3 SINE B2 105 186 -30 2 697 243 0 0 0 chr5 14711025 14711052 -137826207 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 697 26 30 0 0 chr5 14711603 14711636 -137825623 + AT_rich Low_complexity Low_complexity 1 33 0 2 697 214 232 48 24 chr5 14714770 14714854 -137822405 + T-rich Low_complexity Low_complexity 2 87 0 2 697 35 24 0 0 chr5 14714943 14714985 -137822274 + AT_rich Low_complexity Low_complexity 1 42 0 2 697 28 0 0 0 chr5 14715620 14715648 -137821611 + AT_rich Low_complexity Low_complexity 1 28 0 2 697 333 0 0 0 chr5 14716386 14716423 -137820836 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 697 24 85 0 0 chr5 14718147 14718206 -137819053 + AT_rich Low_complexity Low_complexity 1 59 0 3 697 37 62 0 0 chr5 14718262 14718327 -137818932 + AT_rich Low_complexity Low_complexity 1 65 0 3 697 252 307 126 0 chr5 14720889 14721016 -137816243 - L1ME3B LINE L1 -112 6128 5986 3 697 386 304 99 46 chr5 14723823 14724147 -137813112 - L1MD3 LINE L1 -8 7987 7647 3 697 4355 120 23 19 chr5 14725131 14725829 -137811430 - Lx LINE L1 0 6654 5954 3 697 1717 207 28 22 chr5 14726047 14726447 -137810812 - RMER3D-int LTR ERVK -30 2812 2411 3 697 5702 187 78 47 chr5 14726631 14728193 -137809066 - RMER3D-int LTR ERVK -426 2416 486 3 697 1352 205 83 44 chr5 14728317 14728811 -137808448 - RMER3D-int LTR ERVK -1990 852 1 3 697 2775 152 45 6 chr5 14728811 14729282 -137807977 - RLTR17 LTR ERVK 0 692 204 3 697 279 207 44 33 chr5 14729459 14729549 -137807710 - L1MA8 LINE L1 -5 6286 6196 3 697 414 316 129 37 chr5 14730149 14730528 -137806731 + Charlie1b DNA MER1_type 51 464 -59 3 697 2077 213 37 33 chr5 14730666 14731180 -137806079 - RMER20A LTR ERVK 0 516 1 3 697 757 18 45 0 chr5 14733074 14733184 -137804075 - L1Md_F3 LINE L1 -3 6581 6467 3 697 968 18 26 0 chr5 14733184 14733298 -137803961 - L1Md_F3 LINE L1 -215 6369 6253 3 697 207 0 0 0 chr5 14733437 14733460 -137803799 + (T)n Simple_repeat Simple_repeat 1 23 0 3 697 913 51 0 0 chr5 14733460 14733578 -137803681 - B1_Mus1 SINE Alu 0 148 31 3 697 294 257 39 10 chr5 14733585 14733687 -137803572 - Lx9 LINE L1 -63 7581 7477 3 697 247 258 0 29 chr5 14733688 14733756 -137803503 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 3 697 1245 226 25 38 chr5 14733767 14734084 -137803175 + L1_Rod LINE L1 5487 5799 -48 3 697 450 324 119 19 chr5 14734094 14734764 -137802495 - L1M4 LINE L1 -1387 4759 4019 3 697 3122 169 54 39 chr5 14735794 14736905 -137800354 - Lx2B LINE L1 -76 6924 5650 3 697 1217 176 21 8 chr5 14736894 14737135 -137800124 + Lx2B LINE L1 5348 5591 -286 3 697 444 342 108 8 chr5 14737721 14737989 -137799270 - Lx8 LINE L1 -357 7116 6822 3 697 673 311 111 35 chr5 14737994 14738092 -137799167 - ORR1D2-int LTR MaLR -1016 354 257 3 697 1476 60 10 5 chr5 14738092 14738293 -137798966 - L1Md_T LINE L1 0 6582 6381 3 697 673 311 111 35 chr5 14738293 14738510 -137798749 - ORR1D2-int LTR MaLR -1114 256 16 3 697 427 320 26 22 chr5 14738523 14738749 -137798510 - ORR1D2 LTR MaLR 0 374 143 3 697 292 60 0 57 chr5 14739999 14740015 -137797244 + (GAA)n Simple_repeat Simple_repeat 3 17 0 3 697 639 39 0 0 chr5 14740015 14740093 -137797166 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 697 292 60 0 57 chr5 14740093 14740121 -137797138 + (GAA)n Simple_repeat Simple_repeat 3 30 0 3 697 1289 73 6 0 chr5 14740121 14740299 -137796960 + (GGA)n Simple_repeat Simple_repeat 2 180 0 3 697 292 60 0 57 chr5 14740299 14740306 -137796953 + (GAA)n Simple_repeat Simple_repeat 1 7 0 3 697 472 384 48 0 chr5 14740610 14740881 -137796378 - MLT1E1A LTR MaLR -102 578 295 3 697 23 68 0 0 chr5 14741463 14741507 -137795752 + AT_rich Low_complexity Low_complexity 1 44 0 3 697 746 39 10 0 chr5 14741834 14741936 -137795323 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 3 697 1816 284 45 9 chr5 14743071 14743600 -137793659 + Lx5 LINE L1 6484 7031 -19 3 697 375 327 25 25 chr5 14743866 14744005 -137793254 + RSINE1 SINE B4 2 142 -23 3 697 282 29 0 0 chr5 14744005 14744040 -137793219 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 697 375 327 25 25 chr5 14744040 14744057 -137793202 + RSINE1 SINE B4 143 158 -7 3 697 216 188 0 0 chr5 14744435 14744483 -137792776 + T-rich Low_complexity Low_complexity 1 48 0 3 697 2244 138 10 40 chr5 14744483 14744882 -137792377 - RMER16 LTR ERVK -83 450 64 3 697 316 73 0 0 chr5 14744907 14744948 -137792311 - RMER16-int LTR ERVK -4 5402 5362 3 697 2360 103 11 24 chr5 14745123 14745502 -137791757 - Lx3A LINE L1 -3 6978 6605 3 697 29 28 0 0 chr5 14745579 14745615 -137791644 + AT_rich Low_complexity Low_complexity 1 36 0 3 697 315 0 0 0 chr5 14745673 14745708 -137791551 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 697 303 291 0 82 chr5 14745861 14746056 -137791203 + GA-rich Low_complexity Low_complexity 2 180 0 3 697 193 95 46 31 chr5 14746717 14746782 -137790477 + (TAA)n Simple_repeat Simple_repeat 1 66 0 3 697 11671 101 16 0 chr5 14746835 14748534 -137788725 - L1_Mus1 LINE L1 -958 4925 3200 3 697 7299 86 12 0 chr5 14748529 14750166 -137787093 + L1_Mus1 LINE L1 4904 6555 -12 3 697 29 84 0 0 chr5 14750876 14750947 -137786312 + AT_rich Low_complexity Low_complexity 1 71 0 3 697 215 146 0 24 chr5 14751871 14751913 -137785346 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 3 697 21 0 0 0 chr5 14752084 14752105 -137785154 + AT_rich Low_complexity Low_complexity 1 21 0 3 697 202 195 0 0 chr5 14753092 14753133 -137784126 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 697 1549 246 83 7 chr5 14753133 14753632 -137783627 - Lx6 LINE L1 -92 7368 6455 3 697 230 0 33 0 chr5 14753659 14753689 -137783570 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 697 238 26 0 49 chr5 14753968 14754009 -137783250 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 3 697 196 303 66 0 chr5 14754029 14754105 -137783154 + L2a LINE L2 3332 3412 -14 3 697 318 277 41 92 chr5 14754945 14755140 -137782119 - MER2 DNA MER2_type -74 271 87 3 697 7249 233 62 17 chr5 14755647 14756792 -137780467 - Lx6 LINE L1 -12 7448 6232 3 697 3328 40 0 10 chr5 14756792 14757192 -137780067 - MTA_Mm LTR MaLR 0 396 1 3 697 7249 216 34 20 chr5 14757192 14757883 -137779376 - Lx6 LINE L1 -1229 6231 5528 3 697 1404 228 73 75 chr5 14757884 14758854 -137778405 - L1_Mur3 LINE L1 -4316 1564 604 3 697 403 263 122 30 chr5 14759678 14759948 -137777311 - L1MA9 LINE L1 -72 6240 5946 3 697 3614 45 9 0 chr5 14762183 14762629 -137774630 - L1Md_F3 LINE L1 0 6584 6135 3 697 1346 280 87 26 chr5 14762743 14763591 -137773668 - L1M2 LINE L1 -1407 4736 3837 3 697 243 0 0 0 chr5 14764173 14764200 -137773059 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 697 374 139 0 14 chr5 14766265 14766338 -137770921 + (CATA)n Simple_repeat Simple_repeat 1 72 0 3 697 271 318 32 2 chr5 14767301 14767500 -137769759 - L1M3 LINE L1 -863 5280 5067 3 697 22 35 0 0 chr5 14767798 14767827 -137769432 + AT_rich Low_complexity Low_complexity 1 29 0 3 697 501 298 85 19 chr5 14768210 14768470 -137768789 - MER119 DNA MER1_type -45 538 262 3 697 411 302 77 50 chr5 14768446 14768707 -137768552 - MER119 DNA MER1_type -252 331 64 3 697 1126 125 40 0 chr5 14769179 14769355 -137767904 + B2_Mm2 SINE B2 4 186 -9 3 697 586 285 7 7 chr5 14769616 14769761 -137767498 - B1_Mur1 SINE Alu -4 145 1 3 697 1780 122 330 0 chr5 14771358 14771758 -137765501 - RLTR47_MM LTR ERV1 0 532 1 3 697 778 173 177 5 chr5 14772121 14772313 -137764946 - URR1B DNA MER1_type 0 225 1 3 697 8327 25 0 0 chr5 14772588 14773552 -137763707 + L1Md_A LINE L1 5619 6582 0 3 697 225 0 0 0 chr5 14773571 14773596 -137763663 + (A)n Simple_repeat Simple_repeat 1 25 0 3 697 1151 42 14 0 chr5 14773606 14773750 -137763509 + B1_Mus1 SINE Alu 2 147 -1 3 697 4498 128 11 15 chr5 14773891 14774627 -137762632 - Lx3A LINE L1 -7 6974 6242 3 697 1918 224 31 44 chr5 14775781 14776352 -137760907 - RLTR12A LTR ERVK -4 564 1 3 697 306 293 64 29 chr5 14777001 14777173 -137760086 - L1MC5 LINE L1 -64 7897 7720 3 697 2702 178 91 25 chr5 14779217 14779788 -137757471 - RMER19C LTR ERVK 0 611 3 3 697 191 271 0 0 chr5 14780398 14780445 -137756814 + MIR SINE MIR 47 88 -174 3 697 261 83 0 0 chr5 14780467 14780503 -137756756 + (TAA)n Simple_repeat Simple_repeat 1 36 0 3 697 831 276 19 0 chr5 14780770 14780980 -137756279 + B3 SINE B2 2 215 -1 3 697 766 301 93 26 chr5 14782131 14782475 -137754784 + Lx8 LINE L1 7107 7473 0 3 697 860 155 7 0 chr5 14782482 14782624 -137754635 + B1_Mus1 SINE Alu 1 143 -5 3 697 1013 150 0 6 chr5 14783859 14784040 -137753219 + GA-rich Low_complexity Low_complexity 1 180 0 3 697 882 72 61 68 chr5 14784375 14784523 -137752736 + B1_Mus1 SINE Alu 2 148 0 3 697 26 50 0 0 chr5 14784838 14784878 -137752381 + AT_rich Low_complexity Low_complexity 1 40 0 3 697 357 335 42 84 chr5 14785478 14785693 -137751566 + MIR SINE MIR 57 262 0 3 697 449 17 0 17 chr5 14786009 14786068 -137751191 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 3 697 267 79 0 0 chr5 14786072 14786110 -137751149 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 697 23 0 0 0 chr5 14786663 14786686 -137750573 + AT_rich Low_complexity Low_complexity 1 23 0 3 697 249 324 0 0 chr5 14787201 14787269 -137749990 + MER5B DNA MER1_type 43 110 -68 3 697 319 250 0 42 chr5 14787859 14787930 -137749329 - ID_B1 SINE B4 -13 211 144 3 697 22 56 0 0 chr5 14788741 14788777 -137748482 + AT_rich Low_complexity Low_complexity 1 36 0 3 697 6111 112 90 23 chr5 14788777 14789834 -137747425 - Lx3_Mus LINE L1 0 7009 5882 3 697 216 0 0 0 chr5 14790464 14790488 -137746771 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 3 697 395 38 19 0 chr5 14791093 14791146 -137746113 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 697 334 273 56 70 chr5 14791294 14791436 -137745823 - MER104 DNA Tc2 -6 175 36 3 697 324 250 11 33 chr5 14793057 14793148 -137744111 - HAL1-3A_ME LINE L1 -809 2049 1961 3 697 518 172 95 22 chr5 14793360 14793497 -137743762 - RMER1C Other Other 0 1342 1196 3 697 981 49 0 0 chr5 14793497 14793620 -137743639 + (GGAA)n Simple_repeat Simple_repeat 3 125 0 3 697 387 0 0 0 chr5 14794445 14794488 -137742771 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 697 357 243 75 28 chr5 14796887 14796993 -137740266 + PB1D9 SINE Alu 3 113 -7 3 697 314 98 0 19 chr5 14798387 14798439 -137738820 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 697 267 232 39 104 chr5 14798617 14798694 -137738565 - B1F SINE Alu -1 148 77 3 697 23 0 0 0 chr5 14798834 14798857 -137738402 + AT_rich Low_complexity Low_complexity 1 23 0 3 697 1083 138 0 6 chr5 14800149 14800317 -137736942 - URR1B DNA MER1_type 0 225 59 3 697 22 56 0 0 chr5 14800826 14800862 -137736397 + AT_rich Low_complexity Low_complexity 1 36 0 3 697 651 326 92 18 chr5 14802091 14802363 -137734896 - Lx8 LINE L1 -35 7438 7147 4 697 1206 132 11 0 chr5 14802373 14802555 -137734704 - B2_Mm1t SINE B2 -8 185 2 4 697 265 157 37 0 chr5 14803128 14803188 -137734071 + PB1D7 SINE Alu 54 118 -2 4 697 1373 322 84 17 chr5 14803596 14804249 -137733010 - Lx8 LINE L1 -32 7441 6745 4 697 281 342 138 21 chr5 14804589 14804777 -137732482 + ID_B1 SINE B4 6 215 -9 4 697 241 308 0 52 chr5 14805398 14805494 -137731765 + ID_B1 SINE B4 134 224 0 4 697 483 134 0 79 chr5 14805410 14805499 -137731760 + B1_Mur4 SINE Alu 69 150 0 4 697 21 0 0 0 chr5 14806324 14806345 -137730914 + AT_rich Low_complexity Low_complexity 1 21 0 4 697 391 194 0 19 chr5 14806516 14806621 -137730638 + GA-rich Low_complexity Low_complexity 4 106 0 4 697 328 313 132 15 chr5 14806623 14806759 -137730500 + HAL1-3A_ME LINE L1 2286 2437 -421 4 697 791 202 51 19 chr5 14807818 14808090 -137729169 - RMER6C LTR ERVK -15 675 356 4 697 1010 83 0 43 chr5 14808090 14808278 -137728981 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 697 746 181 319 18 chr5 14808278 14808559 -137728700 - RMER6C LTR ERVK -401 355 1 4 697 207 176 0 0 chr5 14809297 14809331 -137727928 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 4 698 29 78 0 0 chr5 14813817 14813881 -137723378 + AT_rich Low_complexity Low_complexity 1 64 0 4 698 270 329 0 0 chr5 14814128 14814207 -137723052 + ID4_ SINE ID 2 80 -3 4 698 245 270 0 16 chr5 14814272 14814336 -137722923 + (CATA)n Simple_repeat Simple_repeat 4 66 0 4 698 24 0 0 0 chr5 14814452 14814476 -137722783 + AT_rich Low_complexity Low_complexity 1 24 0 4 698 547 216 8 33 chr5 14814513 14814633 -137722626 - B1_Mur4 SINE Alu -1 149 33 4 698 639 103 0 0 chr5 14814651 14814748 -137722511 + (TC)n Simple_repeat Simple_repeat 1 97 0 4 698 672 327 56 69 chr5 14815484 14816180 -137721079 - L1MA6 LINE L1 -4 6296 5610 4 698 402 288 227 0 chr5 14816276 14816439 -137720820 - Lx8 LINE L1 -404 7069 6870 4 698 515 249 137 32 chr5 14816458 14816707 -137720552 - L1MA6 LINE L1 -693 5607 5333 4 698 372 133 0 0 chr5 14816852 14816912 -137720347 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 698 466 276 67 5 chr5 14817634 14817860 -137719399 + L1M2 LINE L1 4860 5071 -809 4 698 341 258 32 0 chr5 14817858 14817951 -137719308 - Lx6 LINE L1 -89 7371 7276 4 698 209 204 0 20 chr5 14818209 14818259 -137719000 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 4 698 936 324 65 26 chr5 14818271 14818844 -137718415 - L1MA5A LINE L1 -366 5931 5337 4 698 261 0 0 0 chr5 14819102 14819131 -137718128 + (A)n Simple_repeat Simple_repeat 1 29 0 4 698 1079 65 14 0 chr5 14819287 14819425 -137717834 + B1_Mm SINE Alu 3 142 -5 4 698 217 132 0 0 chr5 14819427 14819465 -137717794 + (A)n Simple_repeat Simple_repeat 1 38 0 4 698 1618 189 55 36 chr5 14821734 14822172 -137715087 - Lx7 LINE L1 -2 7694 7249 4 698 3030 64 2 8 chr5 14822532 14822928 -137714331 - MTA_Mm LTR MaLR -2 394 1 4 698 803 277 71 42 chr5 14823216 14823525 -137713734 + MTE2a LTR MaLR 1 318 -61 4 698 764 264 56 6 chr5 14823541 14823720 -137713539 - B3 SINE B2 -25 191 4 4 698 258 81 0 0 chr5 14824854 14824891 -137712368 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 698 446 318 0 0 chr5 14825427 14825556 -137711703 + (TTAGGC)n Simple_repeat Simple_repeat 3 131 0 4 698 23 0 0 0 chr5 14825734 14825757 -137711502 + AT_rich Low_complexity Low_complexity 1 23 0 4 698 809 177 0 33 chr5 14825811 14825963 -137711296 - B1_Mm SINE Alu 0 147 1 4 698 398 251 121 35 chr5 14825964 14826162 -137711097 + Lx8 LINE L1 7222 7436 -37 4 698 1210 113 11 0 chr5 14826187 14826364 -137710895 + B2_Mm1t SINE B2 2 180 -13 4 698 493 66 327 36 chr5 14826391 14826501 -137710758 + B2_Mm2 SINE B2 47 188 -7 4 698 21 0 0 0 chr5 14827045 14827066 -137710193 + AT_rich Low_complexity Low_complexity 1 21 0 4 698 258 32 0 0 chr5 14827113 14827144 -137710115 + (TGG)n Simple_repeat Simple_repeat 1 31 0 4 698 587 240 22 44 chr5 14827145 14827280 -137709979 - B1_Mur1 SINE Alu -1 148 17 4 698 277 229 55 142 chr5 14827191 14827318 -137709941 - MT2B LTR ERVL -344 257 142 4 698 2385 110 26 47 chr5 14828970 14829399 -137707860 - RLTR25A LTR ERVK -226 877 458 4 698 309 184 0 5 chr5 14829453 14829516 -137707743 + B2_Mm2 SINE B2 49 109 -107 4 698 441 0 0 0 chr5 14829530 14829579 -137707680 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 4 698 21 36 0 0 chr5 14830088 14830116 -137707143 + AT_rich Low_complexity Low_complexity 1 28 0 4 698 2417 104 0 0 chr5 14830316 14830643 -137706616 - ORR1A2 LTR MaLR 0 327 1 4 698 775 212 155 5 chr5 14831166 14831379 -137705880 + RMER10B LTR ERVL 27 271 -127 4 698 300 27 0 0 chr5 14831379 14831416 -137705843 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 698 378 282 18 24 chr5 14831426 14831593 -137705666 + RMER10B LTR ERVL 193 358 -40 4 698 354 263 40 0 chr5 14831777 14831853 -137705406 + B1F2 SINE Alu 1 79 -70 4 698 384 22 0 0 chr5 14832025 14832070 -137705189 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 698 211 280 25 51 chr5 14832156 14832235 -137705024 + ID2 SINE ID 7 83 0 4 698 451 287 9 0 chr5 14832429 14832537 -137704722 + ID_B1 SINE B4 109 217 -7 4 698 1080 113 89 11 chr5 14832619 14832798 -137704461 + B2_Mm2 SINE B2 3 195 0 4 698 336 48 0 0 chr5 14833542 14833584 -137703675 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 698 339 233 81 11 chr5 14833807 14833894 -137703365 + B1F1 SINE Alu 1 93 -56 4 698 291 327 27 0 chr5 14833895 14834005 -137703254 + GA-rich Low_complexity Low_complexity 3 115 0 4 698 266 324 124 6 chr5 14834757 14834934 -137702325 - Lx9 LINE L1 -206 7438 7241 4 698 1245 170 132 171 chr5 14834947 14835386 -137701873 - RMER15 LTR ERVL 0 575 154 4 698 405 294 17 0 chr5 14835439 14835558 -137701701 - Lx9 LINE L1 -465 7179 7059 4 698 257 238 63 0 chr5 14835760 14835823 -137701436 - Lx9 LINE L1 -1196 6448 6382 4 698 2136 127 15 6 chr5 14835831 14836165 -137701094 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 698 5289 63 13 20 chr5 14836167 14836916 -137700343 - IAPEz-int LTR ERVK -2 6479 5736 4 698 1977 76 11 0 chr5 14836915 14837190 -137700069 - IAPEz-int LTR ERVK -4845 1636 1359 4 698 3060 75 26 17 chr5 14837190 14837758 -137699501 - IAPEz-int LTR ERVK -5819 662 165 4 698 229 244 0 0 chr5 14837758 14837799 -137699460 - RLTR27 LTR ERVK -37 272 232 4 698 229 267 0 0 chr5 14837836 14837881 -137699378 - RLTR27 LTR ERVK -34 275 231 4 698 487 106 17 119 chr5 14837881 14837999 -137699260 - IAPEz-int LTR ERVK -6358 123 18 4 698 2136 127 15 6 chr5 14838046 14838380 -137698879 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 698 21 57 0 0 chr5 14838478 14838513 -137698746 + AT_rich Low_complexity Low_complexity 1 35 0 4 698 1938 140 35 0 chr5 14839279 14839594 -137697665 + ORR1A2 LTR MaLR 2 327 0 4 698 581 304 0 0 chr5 14840710 14840848 -137696411 - RSINE1 SINE B4 -19 146 9 4 698 249 119 0 0 chr5 14841238 14841280 -137695979 + (TATG)n Simple_repeat Simple_repeat 2 43 0 4 698 264 119 33 17 chr5 14841724 14841784 -137695475 + T-rich Low_complexity Low_complexity 4 64 0 4 698 1521 237 16 3 chr5 14841852 14842229 -137695030 + Lx6 LINE L1 7068 7449 -11 4 698 28 0 0 0 chr5 14842487 14842515 -137694744 + AT_rich Low_complexity Low_complexity 1 28 0 4 698 1685 52 13 9 chr5 14842810 14843041 -137694218 - L1_Mus3 LINE L1 -9 6629 6398 4 698 362 36 0 0 chr5 14843041 14843097 -137694162 + L1_Mus3 LINE L1 6580 6635 -3 4 698 364 360 8 8 chr5 14843115 14843133 -137694126 + ID_B1 SINE B4 91 108 -116 4 698 2959 158 101 31 chr5 14843133 14843775 -137693484 - RMER6C LTR ERVK 0 690 4 4 698 364 360 8 8 chr5 14843775 14843882 -137693377 + ID_B1 SINE B4 109 216 -8 4 698 207 164 59 15 chr5 14843883 14843951 -137693308 + (TATAA)n Simple_repeat Simple_repeat 2 72 0 4 698 794 208 33 31 chr5 14844935 14845154 -137692105 + B3A SINE B2 1 216 0 4 698 337 324 126 40 chr5 14845249 14845282 -137691977 - B4 SINE B4 -48 244 113 4 698 415 278 0 36 chr5 14845282 14845394 -137691865 - B1_Mus2 SINE Alu -38 109 2 4 698 22 56 0 0 chr5 14846203 14846239 -137691020 + AT_rich Low_complexity Low_complexity 1 36 0 4 698 21641 90 79 13 chr5 14846306 14847098 -137690161 - L1_Mus3 LINE L1 0 6638 5774 4 698 1067 102 0 0 chr5 14847098 14847245 -137690014 + B1_Mus1 SINE Alu 1 147 -1 4 698 21641 151 53 13 chr5 14847245 14851528 -137685731 - L1_Mus3 LINE L1 -110 5773 1313 4 698 2409 167 0 33 chr5 14851511 14851968 -137685291 - L1VL1 LINE L1 -5788 634 193 4 698 278 297 7 52 chr5 14852069 14852204 -137685055 + CT-rich Low_complexity Low_complexity 5 133 0 4 698 1878 192 13 27 chr5 14852398 14852773 -137684486 - ORR1C1 LTR MaLR -8 370 1 4 698 230 253 51 39 chr5 14852977 14853055 -137684204 - ID_B1 SINE B4 -2 222 144 4 698 180 304 56 28 chr5 14853495 14853566 -137683693 - L4 LINE RTE -1352 677 605 4 698 286 341 43 29 chr5 14853972 14854111 -137683148 + Charlie1a DNA MER1_type 978 1118 -337 4 698 235 226 149 35 chr5 14854135 14854222 -137683037 + Charlie1a DNA MER1_type 1353 1449 -6 4 698 30 27 0 0 chr5 14854589 14854626 -137682633 + AT_rich Low_complexity Low_complexity 1 37 0 4 698 22 0 0 0 chr5 14855801 14855823 -137681436 + AT_rich Low_complexity Low_complexity 1 22 0 4 698 3454 96 6 4 chr5 14855890 14856393 -137680866 + L1_Mus4 LINE L1 5921 6424 -212 4 698 473 68 0 0 chr5 14856393 14856466 -137680793 + L1_Mus4 LINE L1 6562 6634 -2 4 698 734 284 2 7 chr5 14857965 14858144 -137679115 + B3A SINE B2 3 182 -34 4 698 264 59 0 0 chr5 14858461 14858495 -137678764 + (TTATA)n Simple_repeat Simple_repeat 4 37 0 4 698 1213 54 0 0 chr5 14860049 14860196 -137677063 + B1_Mus1 SINE Alu 2 148 0 4 698 197 378 30 20 chr5 14860350 14860450 -137676809 + MIRm SINE MIR 21 121 -155 4 698 26 82 0 0 chr5 14862500 14862561 -137674698 + AT_rich Low_complexity Low_complexity 1 61 0 4 698 239 395 20 20 chr5 14863629 14863779 -137673480 - L2 LINE L2 -1889 1530 1381 4 698 302 115 0 19 chr5 14864711 14864764 -137672495 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 698 23 68 0 0 chr5 14864974 14865018 -137672241 + AT_rich Low_complexity Low_complexity 1 44 0 4 698 334 277 80 168 chr5 14865155 14865381 -137671878 - MER67C LTR ERV1 -334 377 172 4 698 240 195 0 94 chr5 14865846 14865931 -137671328 + GA-rich Low_complexity Low_complexity 3 79 0 5 698 294 227 0 0 chr5 14865944 14866019 -137671240 + GA-rich Low_complexity Low_complexity 2 76 0 5 698 402 340 12 58 chr5 14866272 14866444 -137670815 + RSINE1 SINE B4 2 165 0 5 698 243 0 0 0 chr5 14866461 14866488 -137670771 + (TAA)n Simple_repeat Simple_repeat 3 29 0 5 698 186 43 0 0 chr5 14866794 14866817 -137670442 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 698 3760 93 27 20 chr5 14866832 14867397 -137669862 + RLTR13C2 LTR ERVK 1 784 -249 5 698 1751 73 4 4 chr5 14867397 14867630 -137669629 - L1_Mus1 LINE L1 0 6567 6335 5 698 2323 152 15 204 chr5 14867630 14867939 -137669320 + RLTR13C2 LTR ERVK 785 1033 0 5 698 328 261 67 14 chr5 14868405 14868615 -137668644 + RMER17C LTR ERVK 1 221 -189 5 698 23 33 0 0 chr5 14869201 14869231 -137668028 + AT_rich Low_complexity Low_complexity 1 30 0 5 698 261 333 0 0 chr5 14869716 14869785 -137667474 - MTE2b LTR MaLR -101 278 210 5 698 446 210 115 0 chr5 14869826 14869986 -137667273 - L1MA5A LINE L1 -462 5841 5664 5 698 1173 294 13 50 chr5 14870058 14870438 -137666821 + MTE2a LTR MaLR 14 379 0 5 698 292 231 66 59 chr5 14870446 14870598 -137666661 - L1MD LINE L1 -664 5578 5426 5 698 976 167 89 181 chr5 14870619 14870720 -137666539 + RLTR23 LTR ERV1 4 100 -330 5 698 207 0 0 0 chr5 14870720 14870743 -137666516 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 698 976 167 89 181 chr5 14870743 14870933 -137666326 + RLTR23 LTR ERV1 101 268 -162 5 698 1536 127 45 4 chr5 14870933 14871179 -137666080 + RLTR23 LTR ERV1 150 405 -25 5 698 235 255 108 39 chr5 14871237 14871339 -137665920 - MER67D LTR ERV1 -381 133 25 5 698 1070 212 63 40 chr5 14872376 14872830 -137664429 - RMER20A LTR ERVK 0 516 2 5 698 871 194 0 20 chr5 14874295 14874495 -137662764 + Lx2 LINE L1 4861 5056 -827 5 698 6149 142 6 19 chr5 14874489 14875796 -137661463 + Lx2 LINE L1 5344 6633 -364 5 698 1233 156 13 4 chr5 14875797 14876022 -137661237 + Lx2 LINE L1 6765 6991 -6 5 698 685 107 16 0 chr5 14876035 14876157 -137661102 + (TAGA)n Simple_repeat Simple_repeat 3 126 0 5 698 768 63 0 0 chr5 14876204 14876315 -137660944 + MTA_Mm-int LTR MaLR 988 1098 0 5 698 2491 79 3 11 chr5 14876315 14876662 -137660597 + MTA_Mm LTR MaLR 1 344 -52 5 698 3052 303 49 29 chr5 14876672 14878187 -137659072 - ERVL-B4-int LTR ERVL -2814 2900 1356 5 698 9529 138 22 42 chr5 14878248 14878894 -137658365 + L1_Mm LINE L1 1541 2214 -3672 5 698 642 136 76 0 chr5 14878894 14879012 -137658247 - RLTR13C2 LTR ERVK 0 808 682 5 698 881 183 44 9 chr5 14878980 14879164 -137658095 - RLTR13C2 LTR ERVK -721 257 1 5 698 9529 138 22 42 chr5 14879164 14880701 -137656558 + L1_Mm LINE L1 2215 3822 -2064 5 698 321 54 54 0 chr5 14881075 14881131 -137656128 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 698 2908 172 35 28 chr5 14881460 14882035 -137655224 + RMER13B LTR ERVK 72 650 -258 5 698 300 321 12 0 chr5 14882312 14882393 -137654866 + MLT1A1 LTR MaLR 258 339 -69 5 698 1673 259 194 8 chr5 14882420 14883187 -137654072 + RMER1A Other Other 1 525 -505 5 698 827 92 0 0 chr5 14883192 14883301 -137653958 + B1_Mus1 SINE Alu 39 147 -1 5 698 615 152 0 0 chr5 14883306 14883418 -137653841 + GA-rich Low_complexity Low_complexity 4 115 0 5 698 2223 163 107 19 chr5 14883421 14883770 -137653489 + RMER1A Other Other 518 912 -118 5 698 261 0 0 0 chr5 14883770 14883799 -137653460 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 698 300 27 0 0 chr5 14883799 14883835 -137653424 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 698 2223 163 107 19 chr5 14883835 14883952 -137653307 + RMER1A Other Other 913 1025 -5 5 698 3199 24 45 0 chr5 14884067 14884446 -137652813 + MTA_Mm LTR MaLR 1 396 0 5 698 327 343 7 0 chr5 14884559 14884699 -137652560 + (TATG)n Simple_repeat Simple_repeat 2 142 0 5 698 207 69 0 0 chr5 14885869 14885898 -137651361 + (T)n Simple_repeat Simple_repeat 1 29 0 5 698 465 103 0 0 chr5 14886378 14886446 -137650813 + (TA)n Simple_repeat Simple_repeat 2 69 0 5 698 793 254 107 39 chr5 14887168 14887493 -137649766 - RMER13A LTR ERVK -416 492 177 5 698 295 57 57 0 chr5 14887589 14887642 -137649617 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 5 698 1191 68 0 0 chr5 14887646 14887793 -137649466 - B1_Mm SINE Alu 0 147 1 5 698 6937 151 14 3 chr5 14887968 14889085 -137648174 - Lx2 LINE L1 0 6997 5866 5 698 270 0 0 0 chr5 14889085 14889115 -137648144 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 698 8725 143 12 11 chr5 14889115 14889164 -137648095 - Lx2 LINE L1 -1132 5865 5823 5 698 3786 158 34 19 chr5 14889164 14889846 -137647413 - RLTR17 LTR ERVK 0 692 1 5 698 8725 151 16 14 chr5 14889846 14890111 -137647148 - Lx2 LINE L1 -531 5828 5588 5 698 376 302 22 3 chr5 14891033 14891212 -137646047 - MuLV-int LTR ERV1 -1984 5617 5381 5 698 3489 322 67 54 chr5 14891353 14893890 -137643369 - MuLV-int LTR ERV1 -2300 5306 2737 5 698 979 334 99 58 chr5 14894042 14895257 -137642002 - MuLV-int LTR ERV1 -5105 2451 1187 5 698 268 336 74 22 chr5 14895767 14896017 -137641242 - MuLV-int LTR ERV1 -6720 836 449 5 698 11787 155 17 39 chr5 14897302 14897585 -137639674 - L1_Mur2 LINE L1 -304 5573 5287 5 698 2327 88 53 0 chr5 14897585 14897905 -137639354 - L1_Mus1 LINE L1 -5 6562 6226 5 698 11787 155 17 39 chr5 14897905 14899818 -137637441 - L1_Mur2 LINE L1 -591 5286 3426 5 698 2010 120 27 34 chr5 14900498 14900826 -137636433 - ORR1A3 LTR MaLR 0 326 1 5 698 304 262 100 0 chr5 14900835 14900915 -137636344 + PB1D10 SINE Alu 21 108 -9 5 698 258 67 83 0 chr5 14901374 14901434 -137635825 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 5 698 1068 81 0 0 chr5 14902009 14902145 -137635114 + B1_Mm SINE Alu 2 137 -10 5 698 1619 161 224 28 chr5 14902173 14902709 -137634550 + RMER6D LTR ERVK 33 688 -2 5 698 378 302 127 25 chr5 14904674 14904867 -137632392 + B4 SINE B4 2 214 -78 5 698 642 224 0 0 chr5 14904867 14905007 -137632252 + B1_Mur1 SINE Alu 4 143 -6 5 698 1653 245 39 67 chr5 14905028 14905547 -137631712 + Lx6 LINE L1 5802 6272 -1188 5 698 558 227 37 49 chr5 14905595 14905757 -137631502 + Lx5 LINE L1 6481 6640 -410 5 698 1492 106 5 0 chr5 14905773 14905991 -137631268 - L1_Mur2 LINE L1 -1354 4523 4305 5 698 595 124 142 0 chr5 14905986 14906099 -137631160 - MusHAL1 LINE L1 -1436 1276 1148 5 698 2965 133 11 11 chr5 14906099 14906564 -137630695 + L1_Mus4 LINE L1 6168 6632 -4 5 698 3051 172 9 2 chr5 14907418 14907994 -137629265 - L1_Mur2 LINE L1 -2198 3679 3100 5 698 269 400 42 0 chr5 14908310 14908430 -137628829 - RSINE1 SINE B4 -38 127 3 5 698 447 128 0 0 chr5 14908485 14908571 -137628688 + (TC)n Simple_repeat Simple_repeat 1 86 0 5 698 360 0 0 0 chr5 14908571 14908611 -137628648 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 698 2381 147 65 9 chr5 14908611 14909045 -137628214 + L1_Mus4 LINE L1 6179 6636 0 5 698 219 232 101 72 chr5 14909440 14909579 -137627680 + B3 SINE B2 73 215 -1 5 698 287 199 93 18 chr5 14909975 14910077 -137627182 - PB1D9 SINE Alu -21 129 22 5 698 197 299 26 13 chr5 14912747 14912825 -137624434 + MER5A DNA MER1_type 1 79 -110 5 698 575 271 12 8 chr5 14915711 14915888 -137621371 - RLTR19 LTR ERVK 0 499 321 5 698 344 135 0 43 chr5 14915888 14915981 -137621278 + A-rich Low_complexity Low_complexity 1 89 0 5 698 1141 222 55 3 chr5 14916001 14916308 -137620951 - RLTR19 LTR ERVK -176 323 1 5 698 281 237 60 70 chr5 14916366 14916466 -137620793 + PB1D7 SINE Alu 20 118 -2 5 698 1842 197 87 42 chr5 14917363 14917452 -137619807 + RLTR19 LTR ERVK 1 90 -409 5 698 2458 98 3 9 chr5 14917452 14917800 -137619459 + ORR1A1 LTR MaLR 1 346 0 5 698 13039 75 17 3 chr5 14917800 14919568 -137617691 + ORR1A1-int LTR MaLR 1 1792 0 5 698 2509 93 6 0 chr5 14919568 14919911 -137617348 + ORR1A1 LTR MaLR 1 345 -1 5 698 1842 197 87 42 chr5 14919911 14920290 -137616969 + RLTR19 LTR ERVK 91 490 -9 5 698 496 167 28 149 chr5 14920589 14920730 -137616529 + RMER6B LTR ERVK 5 128 -333 5 698 566 232 184 123 chr5 14920741 14920911 -137616348 + RMER6B LTR ERVK 76 253 -208 5 698 1168 69 0 0 chr5 14920911 14921055 -137616204 - B1_Mus1 SINE Alu 0 148 5 5 698 566 232 184 123 chr5 14921055 14921243 -137616016 + RMER6B LTR ERVK 254 456 -5 5 698 4731 165 43 49 chr5 14921247 14922202 -137615057 - Lx2A1 LINE L1 -8 7000 6050 5 698 7508 46 46 3 chr5 14922202 14923121 -137614138 - RLTR13A2 LTR ERVK 0 958 1 5 698 4731 165 43 49 chr5 14923121 14923177 -137614082 - Lx2A1 LINE L1 -959 6049 5995 5 698 842 75 34 7 chr5 14923177 14923324 -137613935 + L1_Mus3 LINE L1 6485 6635 -3 5 698 1157 269 70 22 chr5 14923335 14923738 -137613521 + Lx6 LINE L1 7017 7438 -22 5 698 236 193 105 0 chr5 14923758 14923815 -137613444 + B4A SINE B4 230 292 0 5 698 968 94 0 0 chr5 14924813 14924941 -137612318 + B1_Mm SINE Alu 2 129 -18 5 698 1845 153 255 21 chr5 14924941 14925467 -137611792 + RMER6C LTR ERVK 40 688 -2 5 698 655 239 15 0 chr5 14926518 14926652 -137610607 + B1_Mus2 SINE Alu 1 136 -11 5 698 363 314 132 30 chr5 14928195 14928388 -137608871 + B4 SINE B4 2 214 -78 5 698 629 231 0 0 chr5 14928388 14928528 -137608731 + B1_Mur1 SINE Alu 4 143 -6 5 698 1567 248 39 87 chr5 14928560 14929076 -137608183 + Lx6 LINE L1 5782 6272 -1188 5 698 561 236 29 58 chr5 14929115 14929286 -137607973 + Lx5 LINE L1 6475 6640 -410 5 698 1492 106 5 0 chr5 14929302 14929520 -137607739 - L1_Mur2 LINE L1 -1354 4523 4305 5 698 608 123 129 16 chr5 14929515 14929628 -137607631 - MusHAL1 LINE L1 -1436 1276 1149 5 698 2967 134 11 2 chr5 14929628 14930083 -137607176 + L1_Mus4 LINE L1 6168 6626 -10 5 698 3046 171 10 2 chr5 14930947 14931522 -137605737 - L1_Mur2 LINE L1 -2198 3679 3100 5 698 269 400 42 0 chr5 14931838 14931958 -137605301 - RSINE1 SINE B4 -38 127 3 5 698 402 161 0 0 chr5 14932013 14932106 -137605153 + CT-rich Low_complexity Low_complexity 2 94 0 5 698 270 0 0 0 chr5 14932107 14932137 -137605122 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 698 2420 143 64 9 chr5 14932137 14932573 -137604686 + L1_Mus4 LINE L1 6177 6636 0 5 698 280 174 20 0 chr5 14933518 14933578 -137603681 - PB1D9 SINE Alu -35 114 54 5 698 186 316 39 13 chr5 14936326 14936403 -137600856 + MER5A DNA MER1_type 1 79 -110 5 698 546 276 23 4 chr5 14939289 14939474 -137597785 - RLTR19 LTR ERVK 0 678 314 5 698 386 122 0 35 chr5 14939476 14939561 -137597698 + A-rich Low_complexity Low_complexity 1 82 0 5 698 1086 231 58 3 chr5 14939562 14939871 -137597388 - RLTR19 LTR ERVK -170 329 4 5 698 1564 175 67 53 chr5 14940931 14941020 -137596239 + RLTR19 LTR ERVK 1 90 -409 5 698 2644 72 3 9 chr5 14941020 14941368 -137595891 + ORR1A1 LTR MaLR 1 346 0 5 87 12937 79 16 3 chr5 14941368 14943137 -137594122 + ORR1A1-int LTR MaLR 1 1792 0 5 699 2525 90 6 0 chr5 14943137 14943480 -137593779 + ORR1A1 LTR MaLR 1 345 -1 5 699 1564 193 72 53 chr5 14943480 14943860 -137593399 + RLTR19 LTR ERVK 91 489 -7 5 699 699 215 124 217 chr5 14944159 14944481 -137592778 + RMER6B LTR ERVK 5 250 -211 5 699 1194 84 0 0 chr5 14944481 14944624 -137592635 - B1_Mus2 SINE Alu 0 147 5 5 699 699 215 124 217 chr5 14944624 14944799 -137592460 + RMER6B LTR ERVK 251 456 -5 5 699 4550 167 48 50 chr5 14944803 14945754 -137591505 - Lx2A1 LINE L1 -8 7000 6050 5 699 7950 42 46 3 chr5 14945754 14946673 -137590586 - RLTR13A2 LTR ERVK 0 958 1 5 699 4550 167 48 50 chr5 14946673 14946729 -137590530 - Lx2A1 LINE L1 -959 6049 5995 5 699 791 100 26 20 chr5 14946729 14946882 -137590377 + L1_Mus3 LINE L1 6485 6638 0 6 699 1085 270 73 23 chr5 14946885 14947283 -137589976 + Lx6 LINE L1 7017 7434 -26 6 699 237 211 105 0 chr5 14947307 14947364 -137589895 + B4A SINE B4 230 292 0 6 699 1344 195 88 13 chr5 14947922 14948229 -137589030 + ORR1C1 LTR MaLR 48 377 -1 6 699 198 171 0 0 chr5 14948905 14948946 -137588313 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 699 2009 120 3 70 chr5 14948963 14949304 -137587955 + ORR1A3 LTR MaLR 1 318 -8 6 699 272 27 27 0 chr5 14949402 14949439 -137587820 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 6 699 805 344 71 40 chr5 14950077 14950431 -137586828 - MTEa LTR MaLR -12 367 3 6 699 226 300 17 0 chr5 14950456 14950516 -137586743 - PB1 SINE Alu 0 127 67 6 699 459 0 0 0 chr5 14951604 14951655 -137585604 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 699 503 264 32 0 chr5 14951672 14951797 -137585462 - RSINE1 SINE B4 -34 131 3 6 699 180 111 0 0 chr5 14952608 14952635 -137584624 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 699 10786 162 116 3 chr5 14952784 14955981 -137581278 - Lx LINE L1 0 6654 3066 6 699 2919 119 55 60 chr5 14955982 14956562 -137580697 - RMER17A LTR ERVK 0 751 175 6 699 10499 60 1 5 chr5 14956562 14957880 -137579379 + L1Md_F2 LINE L1 4274 5586 -297 6 699 8342 65 3 0 chr5 14957880 14958873 -137578386 + L1Md_F2 LINE L1 5587 6582 0 6 699 534 129 0 0 chr5 14958874 14958959 -137578300 - L1_Mm LINE L1 -2367 3516 3432 6 699 2109 117 27 34 chr5 14959640 14959968 -137577291 - ORR1A3 LTR MaLR 0 326 1 6 699 313 316 10 21 chr5 14959977 14960074 -137577185 + PB1D10 SINE Alu 21 116 -1 6 699 203 189 0 0 chr5 14960213 14960250 -137577009 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 6 699 1208 68 0 0 chr5 14961565 14961711 -137575548 + B1_Mm SINE Alu 2 147 0 6 699 1773 157 225 27 chr5 14961726 14962262 -137574997 + RMER6D LTR ERVK 33 688 -2 6 699 725 231 15 0 chr5 14963318 14963452 -137573807 + B1_Mus2 SINE Alu 1 136 -11 6 699 36489 44 0 3 chr5 14964113 14969462 -137567797 + L1Md_T LINE L1 162 5589 -297 6 699 9043 31 0 0 chr5 14969462 14970458 -137566801 + L1Md_T LINE L1 5590 6585 0 6 699 434 314 117 15 chr5 14971329 14971526 -137565733 + B4A SINE B4 2 218 -74 6 699 658 228 0 0 chr5 14971545 14971668 -137565591 + B1_Mur1 SINE Alu 21 143 -6 6 699 1687 238 39 82 chr5 14971700 14972213 -137565046 + Lx6 LINE L1 5782 6272 -1188 6 699 554 236 29 58 chr5 14972252 14972423 -137564836 + Lx5 LINE L1 6475 6640 -410 6 699 1507 124 34 1 chr5 14972435 14972751 -137564508 - L1_Mur2 LINE L1 -1584 4559 4295 6 699 2844 132 48 11 chr5 14972758 14973194 -137564065 + L1_Mus4 LINE L1 6175 6626 -10 6 699 234 230 0 91 chr5 14974179 14974289 -137562970 + A-rich Low_complexity Low_complexity 3 102 0 6 699 221 299 26 13 chr5 14976795 14976873 -137560386 + MER5A DNA MER1_type 1 79 -110 6 699 239 0 0 31 chr5 14979550 14979582 -137557677 + (TGGGGG)n Simple_repeat Simple_repeat 6 36 0 6 699 1502 234 55 115 chr5 14979760 14980291 -137556968 - RLTR19 LTR ERVK 0 499 1 6 699 2019 191 87 42 chr5 14981346 14981435 -137555824 + RLTR19 LTR ERVK 1 85 -414 6 699 2857 70 3 0 chr5 14981435 14981780 -137555479 + ORR1A1 LTR MaLR 1 346 0 6 699 13579 81 16 3 chr5 14981780 14983549 -137553710 + ORR1A1-int LTR MaLR 1 1792 0 6 699 2515 82 45 6 chr5 14983549 14983881 -137553378 + ORR1A1 LTR MaLR 1 345 -1 6 699 2019 191 87 42 chr5 14983881 14984260 -137552999 + RLTR19 LTR ERVK 86 490 -9 6 699 548 160 36 150 chr5 14984558 14984698 -137552561 + RMER6B LTR ERVK 5 128 -333 6 699 416 162 250 10 chr5 14984709 14984809 -137552450 + RMER6B LTR ERVK 76 199 -262 6 699 267 140 0 0 chr5 14984828 14984878 -137552381 + (T)n Simple_repeat Simple_repeat 1 50 0 6 699 1230 75 0 0 chr5 14984879 14985026 -137552233 - B1_Mus1 SINE Alu 0 148 2 6 699 590 202 139 67 chr5 14985029 14985209 -137552050 + RMER6B LTR ERVK 264 456 -5 6 699 4714 169 45 43 chr5 14985213 14986217 -137551042 - Lx2A1 LINE L1 -8 7000 5995 6 699 857 93 19 19 chr5 14986217 14986371 -137550888 + L1_Mus3 LINE L1 6485 6638 0 6 699 1131 267 81 28 chr5 14986374 14986771 -137550488 + Lx6 LINE L1 7017 7434 -26 6 699 363 78 0 0 chr5 14986831 14986882 -137550377 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 699 1376 188 85 10 chr5 14987434 14987741 -137549518 + ORR1C1 LTR MaLR 48 377 -1 6 699 219 146 0 0 chr5 14988418 14988459 -137548800 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 699 2001 120 3 70 chr5 14988476 14988817 -137548442 + ORR1A3 LTR MaLR 1 318 -8 6 699 359 41 20 0 chr5 14988915 14988964 -137548295 + (TCTG)n Simple_repeat Simple_repeat 2 51 0 6 699 839 326 71 40 chr5 14989602 14989956 -137547303 - MTEa LTR MaLR -12 367 3 6 699 210 317 17 0 chr5 14989981 14990041 -137547218 - PB1 SINE Alu 0 127 67 6 699 378 0 0 0 chr5 14990429 14990471 -137546788 + (TTA)n Simple_repeat Simple_repeat 1 42 0 6 699 3354 60 41 5 chr5 14990472 14990891 -137546368 - L1_Mus1 LINE L1 -11 6556 6123 6 699 917 26 60 0 chr5 14990891 14991008 -137546251 + L1_Mus1 LINE L1 5998 6121 -446 6 699 280 304 48 19 chr5 14991209 14991313 -137545946 + MTD LTR MaLR 13 119 -300 6 699 19599 30 1 0 chr5 14991327 14994290 -137542969 - L1Md_T LINE L1 -1 6581 3615 6 699 239 333 32 21 chr5 14994290 14994385 -137542874 + MTD LTR MaLR 106 201 -218 6 699 535 286 50 7 chr5 14994753 14994894 -137542365 - B1F SINE Alu 0 149 3 6 699 894 116 0 0 chr5 14996227 14996365 -137540894 + (CA)n Simple_repeat Simple_repeat 1 138 0 6 699 580 239 82 0 chr5 14996416 14996550 -137540709 - B1_Mus2 SINE Alu -1 146 2 6 699 232 78 0 56 chr5 14998122 14998176 -137539083 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 6 699 3936 39 5 0 chr5 14998242 14998676 -137538583 - RLTR10C LTR ERVK 0 436 1 6 699 8238 35 0 0 chr5 14998676 14999612 -137537647 - MMERVK10C-int LTR ERVK 0 7581 6646 6 699 3336 52 0 2 chr5 14999598 15000000 -137537259 - MMERVK10C-int LTR ERVK -1771 5810 5410 6 699 38937 43 0 1 chr5 15000001 15004545 -137532714 - MMERVK10C-int LTR ERVK -2173 5408 870 1 699 990 17 0 0 chr5 15004575 15004692 -137532567 - RLTR10C LTR ERVK -319 117 1 2 699 3550 205 40 3 chr5 15004708 15005416 -137531843 - Lx7 LINE L1 -584 7112 6379 3 699 333 0 0 0 chr5 15006288 15006325 -137530934 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 699 461 272 32 0 chr5 15006342 15006467 -137530792 - RSINE1 SINE B4 -34 131 3 5 699 180 111 0 0 chr5 15007278 15007305 -137529954 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 699 12065 144 119 2 chr5 15007445 15010631 -137526628 - Lx LINE L1 0 6654 3065 7 699 3084 125 40 24 chr5 15010672 15011222 -137526037 - RMER17A LTR ERVK -18 733 175 8 699 1180 96 0 0 chr5 15011222 15011389 -137525870 + L1_Mm LINE L1 4274 4440 -1443 9 699 36025 31 19 19 chr5 15011395 15016059 -137521200 + L1Md_A LINE L1 233 4948 -935 1 699 232 167 46 77 chr5 15016059 15016124 -137521135 - RMER20A LTR ERVK -268 248 186 1 699 36025 31 19 19 chr5 15016124 15016753 -137520506 + L1Md_A LINE L1 4949 5586 -297 1 699 8976 36 0 0 chr5 15016753 15017749 -137519510 + L1Md_T LINE L1 5587 6582 0 1 699 2086 123 27 34 chr5 15018317 15018645 -137518614 - ORR1A3 LTR MaLR 0 326 1 1 699 313 316 10 21 chr5 15018654 15018751 -137518508 + PB1D10 SINE Alu 21 116 -1 1 699 203 189 0 0 chr5 15018890 15018927 -137518332 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 699 343 154 0 0 chr5 15020241 15020293 -137516966 + B1_Mus2 SINE Alu 2 53 -94 1 699 1723 165 124 43 chr5 15020285 15020833 -137516426 + RMER6D LTR ERVK 19 688 -2 1 699 243 341 94 31 chr5 15021193 15021320 -137515939 + MER58A DNA MER1_type 20 154 -70 1 699 705 246 15 0 chr5 15021846 15021980 -137515279 + B1_Mus2 SINE Alu 1 136 -11 1 699 450 314 112 15 chr5 15023506 15023699 -137513560 + B4 SINE B4 2 213 -79 2 699 660 238 0 0 chr5 15023699 15023836 -137513423 + B1_Mur1 SINE Alu 4 140 -9 2 699 1682 240 39 73 chr5 15023859 15024367 -137512892 + Lx6 LINE L1 5782 6272 -1188 2 699 546 227 37 49 chr5 15024415 15024577 -137512682 + Lx5 LINE L1 6481 6640 -410 2 699 1539 96 5 0 chr5 15024593 15024811 -137512448 - L1_Mur2 LINE L1 -1354 4523 4305 2 699 616 115 142 0 chr5 15024806 15024919 -137512340 - MusHAL1 LINE L1 -1436 1276 1148 2 699 3158 130 11 9 chr5 15024919 15025384 -137511875 + L1_Mus4 LINE L1 6168 6633 -3 2 699 3082 172 9 2 chr5 15026236 15026812 -137510447 - L1_Mur2 LINE L1 -2198 3679 3100 2 699 297 373 58 17 chr5 15027128 15027248 -137510011 - RSINE1 SINE B4 -38 127 3 2 699 531 130 0 0 chr5 15027303 15027403 -137509856 + (TC)n Simple_repeat Simple_repeat 1 100 0 2 699 288 0 0 0 chr5 15027403 15027435 -137509824 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 699 2624 139 64 9 chr5 15027435 15027871 -137509388 + L1_Mus4 LINE L1 6177 6636 0 3 699 230 244 114 93 chr5 15028265 15028405 -137508854 + B3 SINE B2 73 215 -1 3 699 289 199 92 0 chr5 15028815 15028895 -137508364 - PB1D9 SINE Alu -34 115 30 3 699 1337 243 39 166 chr5 15033821 15034393 -137502866 - RLTR19 LTR ERVK 0 499 1 3 699 2026 192 85 42 chr5 15035447 15035536 -137501723 + RLTR19 LTR ERVK 1 85 -414 3 699 2810 72 3 0 chr5 15035536 15035881 -137501378 + ORR1A1 LTR MaLR 1 346 0 3 699 13582 81 16 3 chr5 15035881 15037650 -137499609 + ORR1A1-int LTR MaLR 1 1792 0 3 699 2627 82 6 11 chr5 15037650 15037997 -137499262 + ORR1A1 LTR MaLR 1 345 -1 3 699 2026 192 85 42 chr5 15037997 15038377 -137498882 + RLTR19 LTR ERVK 86 490 -9 3 699 537 160 36 150 chr5 15038675 15038815 -137498444 + RMER6B LTR ERVK 5 128 -333 3 699 602 240 195 119 chr5 15038826 15038996 -137498263 + RMER6B LTR ERVK 76 253 -208 3 699 1207 82 0 0 chr5 15038996 15039143 -137498116 - B1_Mus1 SINE Alu 0 148 2 3 699 602 240 195 119 chr5 15039143 15039326 -137497933 + RMER6B LTR ERVK 254 456 -5 3 699 4776 166 45 43 chr5 15039330 15040334 -137496925 - Lx2A1 LINE L1 -8 7000 5995 3 699 857 93 19 19 chr5 15040334 15040488 -137496771 + L1_Mus3 LINE L1 6485 6638 0 4 699 1137 277 70 18 chr5 15040491 15040888 -137496371 + Lx6 LINE L1 7017 7434 -26 4 699 345 82 0 0 chr5 15040948 15040997 -137496262 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 699 1386 184 85 10 chr5 15041547 15041854 -137495405 + ORR1C1 LTR MaLR 48 377 -1 4 699 198 171 0 0 chr5 15042531 15042572 -137494687 + (TAA)n Simple_repeat Simple_repeat 2 42 0 4 699 2016 117 3 70 chr5 15042589 15042930 -137494329 + ORR1A3 LTR MaLR 1 318 -8 4 699 272 27 27 0 chr5 15043028 15043065 -137494194 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 4 699 911 308 76 45 chr5 15043704 15044058 -137493201 - MTEa LTR MaLR -12 367 3 4 699 226 300 17 0 chr5 15044082 15044142 -137493117 - PB1 SINE Alu 0 127 67 4 699 270 0 0 0 chr5 15044531 15044561 -137492698 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4 699 3501 53 36 0 chr5 15044565 15044978 -137492281 - L1_Mus1 LINE L1 -17 6550 6123 5 699 875 51 60 0 chr5 15044978 15045095 -137492164 + L1_Mus1 LINE L1 5998 6121 -446 5 699 254 324 48 19 chr5 15045296 15045400 -137491859 + MTD LTR MaLR 13 119 -300 5 699 8616 25 0 0 chr5 15045413 15047007 -137490252 - L1Md_T LINE L1 -1 6581 4987 5 699 19154 17 12 0 chr5 15047007 15049985 -137487274 - L1Md_T LINE L1 0 6582 3615 5 699 7447 64 0 0 chr5 15049993 15050914 -137486345 - L1Md_T LINE L1 0 6582 5662 5 699 227 307 91 0 chr5 15050914 15051002 -137486257 + MTD LTR MaLR 106 201 -218 5 699 207 0 77 26 chr5 15051004 15051043 -137486216 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 699 554 281 50 14 chr5 15051378 15051519 -137485740 - B1F SINE Alu -1 148 3 5 699 848 98 15 0 chr5 15052849 15052981 -137484278 + (CATA)n Simple_repeat Simple_repeat 1 134 0 5 699 613 219 102 0 chr5 15053036 15053164 -137484095 - B1_Mur2 SINE Alu -7 142 2 5 699 235 171 14 41 chr5 15054683 15054756 -137482503 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 5 699 204 67 0 0 chr5 15054759 15054789 -137482470 + (TTG)n Simple_repeat Simple_repeat 2 31 0 6 699 3846 46 7 0 chr5 15054856 15055289 -137481970 - RLTR10C LTR ERVK 0 436 1 6 699 8010 46 1 0 chr5 15055289 15056224 -137481035 - MMERVK10C-int LTR ERVK 0 7581 6646 6 699 42172 44 0 1 chr5 15056210 15061154 -137476105 - MMERVK10C-int LTR ERVK -1771 5810 870 6 699 2555 111 53 3 chr5 15061152 15061532 -137475727 - MMERVK10C-int LTR ERVK -7182 399 1 6 699 3417 44 0 128 chr5 15061532 15062032 -137475227 - RLTR10C LTR ERVK 0 436 1 6 699 2961 220 28 3 chr5 15062048 15062664 -137474595 - Lx7 LINE L1 -584 7112 6482 6 700 806 68 60 0 chr5 15112914 15113031 -137424228 - L1_Mus1 LINE L1 -446 6121 5998 6 700 3378 50 36 0 chr5 15113031 15113450 -137423809 + L1_Mus1 LINE L1 6123 6556 -11 6 700 270 0 0 0 chr5 15113451 15113481 -137423778 + (TAA)n Simple_repeat Simple_repeat 1 30 0 6 700 768 326 71 40 chr5 15113953 15114307 -137422952 + MTEa LTR MaLR 3 367 -12 6 700 200 35 35 0 chr5 15114946 15114975 -137422284 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 6 700 1892 117 3 70 chr5 15115073 15115414 -137421845 - ORR1A3 LTR MaLR -8 318 1 6 700 219 146 0 0 chr5 15115431 15115472 -137421787 + (TTA)n Simple_repeat Simple_repeat 2 42 0 6 700 1204 205 91 16 chr5 15116146 15116453 -137420806 - ORR1C1 LTR MaLR -1 377 48 6 700 236 193 105 0 chr5 15117005 15117062 -137420197 - B4A SINE B4 0 292 230 7 700 1130 270 73 23 chr5 15117086 15117484 -137419775 - Lx6 LINE L1 -26 7434 7017 7 700 838 89 20 7 chr5 15117495 15117642 -137419617 - L1_Mus3 LINE L1 -5 6633 6485 7 700 4665 167 46 45 chr5 15117642 15118647 -137418612 + Lx2A1 LINE L1 5995 7000 -8 7 700 804 209 112 191 chr5 15118651 15118836 -137418423 - RMER6B LTR ERVK -5 456 254 7 700 1125 88 0 0 chr5 15118836 15118983 -137418276 + B1_Mus1 SINE Alu 2 148 0 7 700 804 209 112 191 chr5 15118983 15119288 -137417971 - RMER6B LTR ERVK -208 253 5 7 700 1892 189 87 42 chr5 15119587 15119966 -137417293 - RLTR19 LTR ERVK -7 492 91 7 700 2500 93 6 0 chr5 15119966 15120309 -137416950 - ORR1A1 LTR MaLR -1 345 1 7 700 12748 81 18 4 chr5 15120309 15122077 -137415182 - ORR1A1-int LTR MaLR 0 1792 1 7 700 2598 78 3 9 chr5 15122077 15122425 -137414834 - ORR1A1 LTR MaLR 0 346 1 7 700 1892 189 87 42 chr5 15122425 15122514 -137414745 - RLTR19 LTR ERVK -409 90 3 7 700 1537 239 54 52 chr5 15123568 15124066 -137413193 + RLTR19 LTR ERVK 1 499 0 7 700 221 0 0 33 chr5 15124244 15124274 -137412985 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 7 700 197 299 26 13 chr5 15126951 15127029 -137410230 - MER5A DNA MER1_type -110 79 1 8 700 21 57 0 0 chr5 15129636 15129671 -137407588 + AT_rich Low_complexity Low_complexity 1 35 0 8 700 295 194 20 2 chr5 15129728 15129829 -137407430 + PB1D9 SINE Alu 23 129 -21 8 700 2376 151 64 9 chr5 15130759 15131195 -137406064 - L1_Mus4 LINE L1 0 6636 6177 8 700 306 0 0 0 chr5 15131195 15131229 -137406030 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 700 615 120 0 0 chr5 15131229 15131346 -137405913 + (GA)n Simple_repeat Simple_repeat 1 117 0 8 700 258 400 42 0 chr5 15131408 15131528 -137405731 + RSINE1 SINE B4 3 127 -38 8 700 3030 172 9 2 chr5 15131844 15132420 -137404839 + L1_Mur2 LINE L1 3100 3679 -2198 8 700 2956 133 11 9 chr5 15133271 15133735 -137403524 - L1_Mus4 LINE L1 -4 6632 6168 8 700 550 142 142 0 chr5 15133735 15133848 -137403411 + MusHAL1 LINE L1 1148 1276 -1436 8 700 1447 108 5 0 chr5 15133843 15134057 -137403202 + L1_Mur2 LINE L1 4305 4519 -1358 8 700 520 248 29 58 chr5 15134077 15134248 -137403011 - Lx5 LINE L1 -410 6640 6475 9 700 1718 239 51 72 chr5 15134234 15134809 -137402450 - Lx6 LINE L1 -667 6391 5801 9 700 661 216 0 0 chr5 15134830 15134970 -137402289 - B1_Mur1 SINE Alu -6 143 4 9 700 391 334 45 3 chr5 15134970 15135162 -137402097 - B4 SINE B4 -78 214 2 9 700 707 224 15 0 chr5 15136681 15136815 -137400444 - B1_Mus2 SINE Alu -11 136 1 9 700 233 320 102 39 chr5 15137338 15137465 -137399794 - MER58A DNA MER1_type -70 154 20 9 700 1590 170 226 28 chr5 15137823 15138361 -137398898 - RMER6D LTR ERVK 0 690 33 9 700 1176 62 0 0 chr5 15138385 15138531 -137398728 - B1_Mm SINE Alu 0 147 2 9 700 22 56 0 0 chr5 15139162 15139198 -137398061 + AT_rich Low_complexity Low_complexity 1 36 0 9 700 203 189 0 0 chr5 15139839 15139876 -137397383 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 9 700 278 273 89 22 chr5 15140015 15140105 -137397154 - PB1D10 SINE Alu -1 116 21 1 700 2006 114 27 34 chr5 15140114 15140442 -137396817 + ORR1A3 LTR MaLR 1 326 0 1 700 625 78 67 0 chr5 15141124 15141214 -137396045 + MusHAL1 LINE L1 2229 2324 -388 1 700 8322 43 208 3 chr5 15141210 15143125 -137394134 - L1Md_F2 LINE L1 -2 6580 4274 1 700 2938 117 38 31 chr5 15143125 15143681 -137393578 + RMER17A LTR ERVK 175 734 -17 1 700 4444 167 39 8 chr5 15143722 15144685 -137392574 + L1_Mur1 LINE L1 3075 4341 -1545 1 700 7278 35 1 0 chr5 15144683 15145539 -137391720 + L1Md_F2 LINE L1 4730 5586 -297 1 700 8020 60 1 1 chr5 15145539 15146528 -137390731 + L1Md_F2 LINE L1 5587 6575 -7 1 700 570 95 12 0 chr5 15146529 15146613 -137390646 - L1_Mm LINE L1 -2367 3516 3432 1 700 1992 120 27 34 chr5 15147294 15147622 -137389637 - ORR1A3 LTR MaLR 0 326 1 1 700 300 305 10 21 chr5 15147631 15147728 -137389531 + PB1D10 SINE Alu 21 116 -1 1 700 203 189 0 0 chr5 15147867 15147904 -137389355 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 700 1134 68 0 0 chr5 15149218 15149364 -137387895 + B1_Mm SINE Alu 2 147 0 1 700 2088 143 242 19 chr5 15149379 15149915 -137387344 + RMER6C LTR ERVK 33 688 -2 1 700 643 246 15 0 chr5 15150968 15151102 -137386157 + B1_Mus2 SINE Alu 1 136 -11 1 700 363 319 49 14 chr5 15152624 15152821 -137384438 + B4 SINE B4 2 218 -74 1 700 510 246 41 0 chr5 15152834 15152956 -137384303 + B1_Mur2 SINE Alu 21 147 -2 1 700 1590 244 39 82 chr5 15152985 15153498 -137383761 + Lx6 LINE L1 5782 6272 -1188 1 700 549 234 37 49 chr5 15153546 15153708 -137383551 + Lx5 LINE L1 6481 6640 -410 1 700 1509 101 5 0 chr5 15153724 15153942 -137383317 - L1_Mur2 LINE L1 -1354 4523 4305 1 700 613 102 111 0 chr5 15153937 15154045 -137383214 - MusHAL1 LINE L1 -1436 1276 1157 1 700 2866 141 11 9 chr5 15154050 15154515 -137382744 + L1_Mus4 LINE L1 6168 6633 -3 1 700 3026 169 10 3 chr5 15155368 15155944 -137381315 - L1_Mur2 LINE L1 -2198 3679 3100 1 700 258 400 42 0 chr5 15156260 15156380 -137380879 - RSINE1 SINE B4 -38 127 3 1 700 609 110 0 0 chr5 15156442 15156551 -137380708 + (TC)n Simple_repeat Simple_repeat 1 109 0 1 700 261 75 0 0 chr5 15156551 15156591 -137380668 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 700 2417 146 64 9 chr5 15156591 15157027 -137380232 + L1_Mus4 LINE L1 6177 6636 0 1 700 263 191 20 0 chr5 15157971 15158033 -137379226 - PB1D9 SINE Alu -34 115 53 1 700 185 299 26 13 chr5 15160755 15160833 -137376426 + MER5A DNA MER1_type 1 79 -110 1 700 1168 240 39 168 chr5 15163711 15164282 -137372977 - RLTR19 LTR ERVK -2 497 1 1 700 758 184 5 93 chr5 15165336 15165425 -137371834 + RLTR19 LTR ERVK 1 90 -409 1 700 2734 64 3 0 chr5 15165425 15165770 -137371489 + ORR1A1 LTR MaLR 1 346 0 1 700 12993 79 16 3 chr5 15165770 15167539 -137369720 + ORR1A1-int LTR MaLR 1 1792 0 1 700 2613 90 6 11 chr5 15167539 15167886 -137369373 + ORR1A1 LTR MaLR 1 345 -1 1 700 1733 182 106 29 chr5 15167887 15168265 -137368994 + RLTR19 LTR ERVK 86 492 -7 1 700 542 167 29 143 chr5 15168564 15168704 -137368555 + RMER6B LTR ERVK 5 128 -333 1 700 648 228 194 124 chr5 15168715 15168885 -137368374 + RMER6B LTR ERVK 76 253 -208 1 700 1188 88 0 0 chr5 15168885 15169032 -137368227 - B1_Mus1 SINE Alu 0 148 2 1 700 648 228 194 124 chr5 15169032 15169217 -137368042 + RMER6B LTR ERVK 254 456 -5 1 700 4420 170 45 48 chr5 15169221 15170180 -137367079 - Lx2A1 LINE L1 -8 7000 6045 1 700 38756 50 0 3 chr5 15170187 15176835 -137360424 - L1Md_T LINE L1 -20 6565 1 1 700 1370 188 88 7 chr5 15176866 15177171 -137360088 + ORR1C1 LTR MaLR 48 377 -1 1 700 246 136 0 0 chr5 15177847 15177891 -137359368 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 700 2016 117 3 70 chr5 15177908 15178249 -137359010 + ORR1A3 LTR MaLR 1 318 -8 1 700 452 18 18 0 chr5 15178346 15178403 -137358856 + (TCTG)n Simple_repeat Simple_repeat 2 59 0 1 700 907 306 71 40 chr5 15179037 15179391 -137357868 - MTEb LTR MaLR -12 367 3 1 700 216 321 0 0 chr5 15179420 15179476 -137357783 - PB1 SINE Alu -5 122 67 1 700 378 0 0 0 chr5 15179864 15179906 -137357353 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 700 3423 60 41 0 chr5 15179907 15180324 -137356935 - L1_Mus1 LINE L1 -11 6556 6123 1 700 874 43 60 0 chr5 15180324 15180441 -137356818 + L1_Mus1 LINE L1 5998 6121 -446 1 700 280 304 48 19 chr5 15180642 15180746 -137356513 + MTD LTR MaLR 13 119 -300 1 700 19413 32 0 1 chr5 15180760 15183728 -137353531 - L1Md_T LINE L1 -1 6581 3615 1 700 248 284 91 0 chr5 15183728 15183816 -137353443 + MTD LTR MaLR 106 201 -218 1 700 213 119 0 0 chr5 15183817 15183859 -137353400 + (A)n Simple_repeat Simple_repeat 1 42 0 1 700 562 281 50 14 chr5 15184193 15184334 -137352925 - B1F SINE Alu -1 148 3 1 700 471 141 0 0 chr5 15185682 15185760 -137351499 + (CATA)n Simple_repeat Simple_repeat 1 78 0 1 700 637 220 68 0 chr5 15185815 15185947 -137351312 - B1_Mur3 SINE Alu -7 142 2 1 700 182 135 39 0 chr5 15187486 15187538 -137349721 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 1 700 3659 39 0 128 chr5 15187632 15188132 -137349127 - RLTR10C LTR ERVK 0 436 1 1 700 8176 39 0 0 chr5 15188132 15189068 -137348191 - MMERVK10C-int LTR ERVK 0 7581 6646 1 700 42310 45 0 1 chr5 15189054 15193998 -137343261 - MMERVK10C-int LTR ERVK -1771 5810 870 1 700 2524 99 72 3 chr5 15193996 15194369 -137342890 - MMERVK10C-int LTR ERVK -7182 399 1 1 700 3672 37 0 128 chr5 15194369 15194869 -137342390 - RLTR10C LTR ERVK 0 436 1 1 700 3590 204 40 3 chr5 15194885 15195593 -137341666 - Lx7 LINE L1 -584 7112 6379 1 700 387 0 0 0 chr5 15196465 15196508 -137340751 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 700 511 256 32 0 chr5 15196525 15196650 -137340609 - RSINE1 SINE B4 -34 131 3 1 700 180 111 0 0 chr5 15197461 15197488 -137339771 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1 700 9763 138 41 4 chr5 15197640 15200831 -137336428 - Lx LINE L1 -7 6647 3075 1 700 3101 112 37 56 chr5 15200833 15201421 -137335838 - RMER17A LTR ERVK 0 751 175 1 700 10345 56 11 5 chr5 15201421 15202726 -137334533 + L1Md_F2 LINE L1 4274 5586 -297 1 700 8290 61 6 0 chr5 15202727 15203715 -137333544 + L1Md_F2 LINE L1 5588 6581 -1 1 700 590 106 0 0 chr5 15203716 15203801 -137333458 - L1_Mm LINE L1 -2367 3516 3432 1 701 2005 123 30 37 chr5 15204483 15204811 -137332448 - ORR1A3 LTR MaLR 0 326 1 1 701 328 305 10 21 chr5 15204820 15204917 -137332342 + PB1D10 SINE Alu 21 116 -1 1 701 203 189 0 0 chr5 15205056 15205093 -137332166 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 701 1213 68 0 0 chr5 15206409 15206555 -137330704 + B1_Mm SINE Alu 2 147 0 1 701 2245 146 242 19 chr5 15206570 15207106 -137330153 + RMER6C LTR ERVK 33 688 -2 1 701 762 216 15 0 chr5 15208157 15208291 -137328968 + B1_Mus2 SINE Alu 1 136 -11 1 701 407 325 112 15 chr5 15209834 15210031 -137327228 + B4 SINE B4 2 217 -75 1 701 567 238 41 0 chr5 15210044 15210166 -137327093 + B1_Mur2 SINE Alu 21 147 -2 1 701 1579 246 39 82 chr5 15210195 15210708 -137326551 + Lx6 LINE L1 5782 6272 -1188 1 701 552 227 37 49 chr5 15210756 15210918 -137326341 + Lx5 LINE L1 6481 6640 -410 1 701 1519 101 5 0 chr5 15210934 15211152 -137326107 - L1_Mur2 LINE L1 -1354 4523 4305 1 701 621 102 111 0 chr5 15211147 15211255 -137326004 - MusHAL1 LINE L1 -1436 1276 1157 1 701 3084 135 13 2 chr5 15211260 15211714 -137325545 + L1_Mus4 LINE L1 6168 6626 -10 1 701 3052 169 10 3 chr5 15212579 15213155 -137324104 - L1_Mur2 LINE L1 -2198 3679 3100 1 701 298 364 58 17 chr5 15213471 15213591 -137323668 - RSINE1 SINE B4 -38 127 3 1 701 624 115 0 0 chr5 15213653 15213766 -137323493 + (TC)n Simple_repeat Simple_repeat 1 113 0 1 701 276 53 0 0 chr5 15213766 15213804 -137323455 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 701 2575 146 64 9 chr5 15213804 15214240 -137323019 + L1_Mus4 LINE L1 6177 6636 0 1 701 249 228 114 93 chr5 15214635 15214775 -137322484 + B3 SINE B2 73 215 -1 1 701 314 200 49 25 chr5 15215171 15215290 -137321969 - PB1D9 SINE Alu -21 129 4 1 701 21 57 0 0 chr5 15215329 15215364 -137321895 + AT_rich Low_complexity Low_complexity 1 35 0 1 701 233 286 26 13 chr5 15217940 15218018 -137319241 + MER5A DNA MER1_type 1 79 -110 1 701 1552 231 48 126 chr5 15220904 15221445 -137315814 - RLTR19 LTR ERVK 0 499 1 1 701 4243 111 50 17 chr5 15222126 15223490 -137313769 - L1VL2 LINE L1 -2068 1547 134 1 701 834 254 144 33 chr5 15223493 15223860 -137313399 - L1VL2 LINE L1 -5927 408 1 1 701 813 86 0 221 chr5 15224321 15224529 -137312730 + Lx2 LINE L1 6531 6692 -305 1 701 252 0 0 0 chr5 15224529 15224557 -137312702 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 701 1158 297 48 21 chr5 15224572 15225009 -137312250 + RMER5 LTR ERV1 86 534 0 1 701 8099 25 2 3 chr5 15225177 15226107 -137311152 - RLTR13B3 LTR ERVK 0 929 1 1 701 281 374 5 18 chr5 15226152 15226375 -137310884 + RLTR4_MM-int LTR ERV1 1727 1946 -5832 1 701 290 301 59 92 chr5 15226521 15226759 -137310500 + RLTR4_MM-int LTR ERV1 1958 2187 -5414 1 701 1160 333 54 37 chr5 15227203 15228237 -137309022 + RLTR4_MM-int LTR ERV1 2633 3684 -3917 1 701 1250 144 5 0 chr5 15228256 15228444 -137308815 - RLTR41 LTR ERV1 -74 372 184 1 701 390 146 0 0 chr5 15228614 15228696 -137308563 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1 701 193 0 29 59 chr5 15228694 15228728 -137308531 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 1 701 24 0 0 0 chr5 15228815 15228839 -137308420 + AT_rich Low_complexity Low_complexity 1 24 0 1 701 501 341 83 8 chr5 15228896 15229162 -137308097 + B4A SINE B4 1 286 -6 1 701 637 163 39 0 chr5 15229851 15229980 -137307279 + Lx5 LINE L1 6909 7042 -8 1 701 2722 12 0 0 chr5 15230585 15230910 -137306349 - L1Md_T LINE L1 -810 5073 4749 1 701 4064 18 0 0 chr5 15230909 15231399 -137305860 + L1Md_T LINE L1 5097 5586 -297 1 701 8513 31 0 0 chr5 15231399 15232395 -137304864 + L1Md_T LINE L1 5587 6582 0 1 701 21 0 0 0 chr5 15232539 15232560 -137304699 + AT_rich Low_complexity Low_complexity 1 21 0 1 701 1366 161 33 124 chr5 15232851 15233213 -137304046 - ORR1A4 LTR MaLR 0 329 1 1 701 322 310 53 15 chr5 15233440 15233571 -137303688 + RMER5 LTR ERV1 399 534 0 1 701 1700 162 39 110 chr5 15233665 15233724 -137303535 - ORR1B2 LTR MaLR -8 359 292 1 701 183 42 0 0 chr5 15233724 15233748 -137303511 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 701 1700 162 39 110 chr5 15233748 15234070 -137303189 - ORR1B2 LTR MaLR -76 291 6 1 701 393 117 0 0 chr5 15234272 15234332 -137302927 + (A)n Simple_repeat Simple_repeat 1 60 0 2 701 717 247 73 0 chr5 15234902 15235052 -137302207 + B3 SINE B2 8 168 -48 2 701 630 129 0 29 chr5 15235047 15235151 -137302108 + B2_Mm2 SINE B2 59 159 -36 2 701 765 0 0 0 chr5 15235151 15235236 -137302023 + (GAAA)n Simple_repeat Simple_repeat 3 87 0 2 701 227 326 106 28 chr5 15237147 15237289 -137299970 + MIRc SINE MIR 102 254 -14 2 701 684 0 0 0 chr5 15240349 15240425 -137296834 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 701 779 39 10 0 chr5 15240872 15240975 -137296284 + (TC)n Simple_repeat Simple_repeat 2 105 0 2 701 577 276 60 30 chr5 15241012 15241180 -137296079 - B4A SINE B4 -2 290 118 2 701 234 0 0 0 chr5 15241834 15241860 -137295399 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2 701 1276 102 17 0 chr5 15241861 15242038 -137295221 - B2_Mm2 SINE B2 -14 181 2 2 701 21 0 0 0 chr5 15242045 15242066 -137295193 + AT_rich Low_complexity Low_complexity 1 21 0 2 701 414 305 0 60 chr5 15242083 15242233 -137295026 - RSINE1 SINE B4 -13 152 12 2 701 779 98 0 24 chr5 15242890 15243015 -137294244 + L1Md_F2 LINE L1 6442 6563 -19 2 701 230 53 79 0 chr5 15244416 15244454 -137292805 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 701 5350 212 25 41 chr5 15244809 15246076 -137291183 + Lx5 LINE L1 5800 7045 -5 2 701 21 0 0 0 chr5 15246082 15246103 -137291156 + AT_rich Low_complexity Low_complexity 1 21 0 2 701 212 362 0 0 chr5 15246231 15246300 -137290959 - MER5A DNA MER1_type -95 94 26 2 701 421 298 0 55 chr5 15246446 15246556 -137290703 + PB1D10 SINE Alu 13 116 -1 2 701 249 159 0 0 chr5 15246556 15246600 -137290659 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2 701 227 338 12 48 chr5 15246666 15246750 -137290509 + B1F SINE Alu 67 147 -2 2 701 21 36 0 0 chr5 15246758 15246786 -137290473 + AT_rich Low_complexity Low_complexity 1 28 0 2 701 257 218 176 44 chr5 15246879 15246970 -137290289 - B3 SINE B2 0 216 114 2 701 388 329 23 95 chr5 15247042 15247436 -137289823 + MTE2a LTR MaLR 40 379 0 2 701 3585 8 2 0 chr5 15247648 15248043 -137289216 - MTA_Mm LTR MaLR 0 396 1 2 701 25 51 0 0 chr5 15248127 15248166 -137289093 + AT_rich Low_complexity Low_complexity 1 39 0 2 701 2263 170 131 15 chr5 15248422 15248894 -137288365 + RLTR24 LTR ERV1 3 529 0 2 701 1009 295 69 11 chr5 15248915 15249275 -137287984 + Lx8 LINE L1 6252 6632 -841 2 701 920 325 43 73 chr5 15249415 15249783 -137287476 - MTE2a LTR MaLR -4 375 19 2 701 1502 236 65 0 chr5 15250051 15250402 -137286857 - ORR1D1 LTR MaLR 0 374 1 2 701 23 0 0 0 chr5 15250557 15250580 -137286679 + AT_rich Low_complexity Low_complexity 1 23 0 2 701 32 0 0 0 chr5 15250608 15250640 -137286619 + AT_rich Low_complexity Low_complexity 1 32 0 2 701 21 0 0 0 chr5 15250681 15250702 -137286557 + AT_rich Low_complexity Low_complexity 1 21 0 2 701 283 322 139 33 chr5 15251712 15251892 -137285367 - B3A SINE B2 -13 203 5 2 701 416 261 72 29 chr5 15252327 15252465 -137284794 + MER63B DNA AcHobo 284 427 -9 2 701 351 0 0 0 chr5 15252667 15252706 -137284553 + (A)n Simple_repeat Simple_repeat 1 39 0 2 701 863 50 215 0 chr5 15253282 15253403 -137283856 - B1_Mm SINE Alu 0 147 1 2 701 752 0 11 0 chr5 15253554 15253642 -137283617 + (GA)n Simple_repeat Simple_repeat 1 89 0 2 701 567 290 54 27 chr5 15253896 15254194 -137283065 - L1M5 LINE L1 -490 5689 5384 2 701 614 261 11 8 chr5 15254564 15254702 -137282557 - ID_B1 SINE B4 -47 245 101 2 701 297 0 0 0 chr5 15254706 15254739 -137282520 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 701 1201 48 7 0 chr5 15256085 15256231 -137281028 + B1_Mm SINE Alu 1 147 0 2 701 3788 52 128 2 chr5 15257149 15257650 -137279609 + LTRIS2 LTR ERV1 1 564 0 2 701 22 35 0 0 chr5 15257949 15257978 -137279281 + AT_rich Low_complexity Low_complexity 1 29 0 2 701 192 77 0 0 chr5 15258157 15258183 -137279076 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 701 280 180 49 0 chr5 15258183 15258244 -137279015 + RMER6D LTR ERVK 2 65 -655 2 701 1837 116 18 28 chr5 15258245 15258572 -137278687 - Lx3B LINE L1 -603 6370 6047 2 701 10719 140 31 9 chr5 15258577 15260612 -137276647 - L1_Mur1 LINE L1 -1631 4255 2177 2 701 3355 136 57 8 chr5 15262044 15263024 -137274235 - L1_Mur1 LINE L1 -4159 1727 696 2 701 271 0 51 0 chr5 15263140 15263179 -137274080 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2 701 336 228 3 3 chr5 15263196 15263297 -137273962 - L1_Mur1 LINE L1 -6232 752 679 2 701 734 261 90 48 chr5 15264734 15264901 -137272358 + MLT1A0 LTR MaLR 4 174 -191 2 701 629 25 13 0 chr5 15264901 15264980 -137272279 + (TC)n Simple_repeat Simple_repeat 2 81 0 2 701 734 250 181 19 chr5 15264980 15265146 -137272113 + MLT1A0 LTR MaLR 175 408 0 2 701 722 163 92 14 chr5 15265435 15265621 -137271638 - B3 SINE B2 -1 194 2 2 701 1244 104 0 15 chr5 15266035 15266231 -137271028 - Lx2A1 LINE L1 -2 7006 6814 2 701 21 36 0 0 chr5 15266835 15266863 -137270396 + AT_rich Low_complexity Low_complexity 1 28 0 2 701 369 323 68 5 chr5 15268462 15268733 -137268526 - L1M5 LINE L1 -2138 5744 5444 2 701 561 264 19 57 chr5 15269580 15269789 -137267470 - Lx8 LINE L1 -4 7469 7269 2 701 200 51 77 0 chr5 15270215 15270254 -137267005 + L2a LINE L2 3251 3292 -134 2 701 284 299 114 11 chr5 15270992 15271080 -137266179 + MER58B DNA MER1_type 200 296 -45 2 701 305 26 0 0 chr5 15271091 15271130 -137266129 - MusHAL1 LINE L1 -2571 783 745 2 701 6855 106 30 2 chr5 15271127 15272331 -137264928 + Lx LINE L1 5408 6647 -7 2 701 3342 248 66 65 chr5 15272905 15274425 -137262834 - Lx9 LINE L1 -3 7641 6120 2 701 279 290 0 0 chr5 15274881 15274943 -137262316 - MTEa LTR MaLR -317 62 1 2 701 756 247 86 48 chr5 15275036 15275304 -137261955 + MTEb LTR MaLR 100 377 -2 2 701 4505 181 60 7 chr5 15276886 15276968 -137260291 - Lx5 LINE L1 -1 7049 6943 2 701 540 0 0 0 chr5 15276968 15277028 -137260231 + (TTCTC)n Simple_repeat Simple_repeat 2 61 0 2 701 4505 181 60 7 chr5 15277028 15277055 -137260204 - Lx5 LINE L1 -108 6942 6905 2 701 1059 31 0 0 chr5 15277055 15277182 -137260077 + (CA)n Simple_repeat Simple_repeat 2 128 0 2 701 4505 181 60 7 chr5 15277182 15277902 -137259357 - Lx5 LINE L1 -146 6904 6176 2 701 504 333 35 46 chr5 15277924 15278097 -137259162 + B4A SINE B4 118 288 -4 2 701 432 0 0 0 chr5 15278132 15278180 -137259079 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 701 1683 183 47 32 chr5 15278336 15278828 -137258431 + RMER17C LTR ERVK 19 439 -519 2 701 204 300 57 0 chr5 15279167 15279237 -137258022 + MIR SINE MIR 189 262 0 2 701 504 259 75 17 chr5 15279986 15280159 -137257100 + RLTR41 LTR ERV1 264 446 0 2 701 620 242 93 85 chr5 15280311 15280676 -137256583 - RLTR9A LTR ERVK 0 368 1 2 701 298 395 40 13 chr5 15280776 15280925 -137256334 - ORR1E LTR MaLR -206 153 1 2 701 3032 139 110 31 chr5 15282207 15282844 -137254415 - RMER6C LTR ERVK -3 687 1 2 701 389 247 104 36 chr5 15283031 15283212 -137254047 + MLT1A LTR MaLR 39 312 -62 2 701 966 253 90 29 chr5 15284524 15284876 -137252383 - MTD LTR MaLR -7 400 5 2 701 368 304 0 97 chr5 15286440 15286553 -137250706 + MT2B LTR ERVL 157 258 -343 2 701 689 226 0 28 chr5 15286460 15286601 -137250658 + B1_Mus2 SINE Alu 11 147 0 2 701 246 286 63 0 chr5 15286847 15286910 -137250349 - B1F SINE Alu -70 79 13 2 701 33842 35 0 0 chr5 15287404 15292619 -137244640 + L1Md_T LINE L1 278 5589 -297 2 701 9016 6 0 0 chr5 15292619 15293651 -137243608 + L1Md_T LINE L1 5590 6585 0 2 701 397 220 96 32 chr5 15294556 15294650 -137242609 - B1_Mur2 SINE Alu -2 147 48 2 701 206 357 0 0 chr5 15295075 15295131 -137242128 - L2a LINE L2 -24 3402 3347 2 701 22 0 0 0 chr5 15295975 15295997 -137241262 + AT_rich Low_complexity Low_complexity 1 22 0 2 701 3095 66 0 17 chr5 15296013 15296415 -137240844 - L1_Mus1 LINE L1 -1 6566 6172 2 701 210 227 0 0 chr5 15296976 15297020 -137240239 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 701 797 40 0 0 chr5 15299814 15299913 -137237346 + B1_Mus2 SINE Alu 49 147 0 2 701 1272 135 0 0 chr5 15300165 15300365 -137236894 - L1_Mm LINE L1 -163 5720 5521 2 701 1364 89 10 5 chr5 15300365 15300567 -137236692 + L1_Mus3 LINE L1 6435 6637 -1 2 701 257 300 0 79 chr5 15300579 15300655 -137236604 + ID4_ SINE ID 1 70 -13 2 701 225 65 0 0 chr5 15300799 15300830 -137236429 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 701 211 176 0 0 chr5 15301008 15301042 -137236217 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 701 25 31 0 0 chr5 15301716 15301748 -137235511 + AT_rich Low_complexity Low_complexity 1 32 0 2 701 392 0 21 0 chr5 15302079 15302127 -137235132 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 701 3485 54 2 7 chr5 15302515 15302961 -137234298 - L1Md_F2 LINE L1 0 6582 6139 2 701 774 255 105 103 chr5 15302979 15303440 -137233819 - MT2B LTR ERVL -2 599 1 2 701 2220 166 34 20 chr5 15303968 15304375 -137232884 - MTC LTR MaLR -8 413 1 2 701 357 316 75 32 chr5 15307700 15308008 -137229251 - RLTR12A LTR ERVK -10 558 238 2 701 443 90 0 13 chr5 15308011 15308090 -137229169 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 701 309 51 0 0 chr5 15308090 15308129 -137229130 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 701 482 254 47 123 chr5 15308130 15308331 -137228928 + MTEa LTR MaLR 163 365 -14 2 701 523 319 75 56 chr5 15308436 15308755 -137228504 - HAL1 LINE L1 -364 2143 1819 2 701 1898 248 48 54 chr5 15308785 15309283 -137227976 - RMER19C LTR ERVK 0 611 117 3 701 4933 74 26 13 chr5 15309856 15310539 -137226720 - Lx3_Mus LINE L1 0 7009 6318 3 701 339 372 63 13 chr5 15311260 15311418 -137225841 - MIR SINE MIR -69 193 28 3 701 180 111 0 0 chr5 15311459 15311486 -137225773 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 701 33749 43 0 4 chr5 15312783 15318046 -137219213 + L1Md_T LINE L1 250 5589 -297 3 701 8081 53 0 0 chr5 15318046 15319042 -137218217 + L1Md_T LINE L1 5590 6585 0 3 701 2823 18 3 0 chr5 15319042 15319384 -137217875 + L1Md_T LINE L1 5244 5586 -297 3 701 8521 31 0 0 chr5 15319384 15320380 -137216879 + L1Md_T LINE L1 5587 6582 0 3 701 232 317 86 38 chr5 15320963 15321068 -137216191 - MIRc SINE MIR -51 217 108 3 701 242 299 39 0 chr5 15321240 15321317 -137215942 - MIRb SINE MIR -160 108 29 3 701 676 259 7 0 chr5 15321757 15321892 -137215367 - B1_Mur2 SINE Alu -2 147 12 3 701 186 209 0 0 chr5 15323786 15323829 -137213430 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 3 701 4084 89 6 0 chr5 15323900 15324450 -137212809 - L1_Mus3 LINE L1 -4 6634 6082 3 701 3014 140 80 13 chr5 15325252 15325793 -137211466 - Lx LINE L1 0 6654 6078 3 701 717 288 48 35 chr5 15326859 15327086 -137210173 + B4A SINE B4 1 230 -62 3 701 711 301 6 0 chr5 15327086 15327249 -137210010 + B3 SINE B2 2 165 -51 3 701 420 82 0 0 chr5 15327249 15327310 -137209949 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 701 23 0 0 0 chr5 15327310 15327333 -137209926 + AT_rich Low_complexity Low_complexity 1 23 0 3 701 329 141 32 119 chr5 15327359 15327601 -137209658 + (TTATA)n Simple_repeat Simple_repeat 1 221 0 3 701 3564 229 91 16 chr5 15327646 15328636 -137208623 + Lx7 LINE L1 6431 7494 -202 3 701 242 287 18 27 chr5 15328629 15328740 -137208519 + Lx6 LINE L1 7316 7425 -35 3 701 225 270 0 113 chr5 15328749 15328820 -137208439 + B4A SINE B4 212 274 -18 3 701 231 178 0 0 chr5 15329843 15329888 -137207371 + Lx4A LINE L1 7012 7056 -2 3 701 216 97 0 0 chr5 15329889 15329920 -137207339 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 701 3860 39 0 0 chr5 15330048 15330505 -137206754 - L1Md_T LINE L1 0 6582 6126 3 701 633 39 0 0 chr5 15330505 15330583 -137206676 + B1_Mus1 SINE Alu 20 97 -51 3 701 27 29 0 0 chr5 15330626 15330660 -137206599 + AT_rich Low_complexity Low_complexity 1 34 0 3 701 441 0 0 0 chr5 15331591 15331640 -137205619 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 3 701 251 224 0 33 chr5 15331729 15331789 -137205470 + MTE2a LTR MaLR 284 341 -38 3 701 682 126 34 0 chr5 15332269 15332446 -137204813 + CT-rich Low_complexity Low_complexity 1 183 0 3 701 1092 92 0 0 chr5 15332450 15332592 -137204667 - B1_Mus1 SINE Alu -5 143 2 3 701 218 91 42 70 chr5 15333372 15333389 -137203870 + A-rich Low_complexity Low_complexity 2 18 0 3 701 1090 95 7 0 chr5 15333389 15333536 -137203723 + B1_Mus1 SINE Alu 1 148 0 3 701 218 91 42 70 chr5 15333536 15333589 -137203670 + A-rich Low_complexity Low_complexity 19 69 0 3 701 299 23 47 0 chr5 15333696 15333739 -137203520 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 3 701 609 14 0 0 chr5 15333745 15333815 -137203444 + (GGAA)n Simple_repeat Simple_repeat 2 71 0 3 701 367 323 145 25 chr5 15333978 15334137 -137203122 - MTE2a LTR MaLR 0 379 202 3 701 1558 193 43 81 chr5 15334210 15334670 -137202589 + RLTR1B LTR ERV1 57 512 0 3 701 360 313 0 0 chr5 15334682 15334765 -137202494 - MTE2a LTR MaLR -215 164 82 3 701 1126 75 0 0 chr5 15335088 15335234 -137202025 + B1_Mm SINE Alu 1 146 -1 3 701 540 45 0 0 chr5 15335236 15335303 -137201956 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 3 702 291 161 0 0 chr5 15335505 15335561 -137201698 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 3 702 228 288 95 9 chr5 15335927 15336032 -137201227 + MIRb SINE MIR 53 166 -102 3 702 194 0 39 0 chr5 15336184 15336210 -137201049 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 702 220 328 134 16 chr5 15336702 15336829 -137200430 + L2a LINE L2 3269 3410 -16 3 702 956 127 6 0 chr5 15337449 15337614 -137199645 + (TC)n Simple_repeat Simple_repeat 1 166 0 3 702 306 0 0 0 chr5 15337614 15337647 -137199612 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 702 833 31 14 85 chr5 15338780 15338921 -137198338 + L1Md_F3 LINE L1 6453 6583 -1 3 702 29 60 0 0 chr5 15338931 15338981 -137198278 + AT_rich Low_complexity Low_complexity 1 50 0 3 702 451 299 82 24 chr5 15338985 15339191 -137198068 + ID_B1 SINE B4 3 220 -4 3 702 233 354 40 0 chr5 15339922 15340021 -137197238 + MIRb SINE MIR 10 112 -156 3 702 21 57 0 0 chr5 15340036 15340071 -137197188 + AT_rich Low_complexity Low_complexity 1 35 0 3 702 4875 120 12 64 chr5 15340512 15341359 -137195900 - RLTR13B4 LTR ERVK 0 803 1 3 702 306 228 0 98 chr5 15341747 15341859 -137195400 - MLT1B LTR MaLR -74 316 216 3 702 873 139 23 0 chr5 15341895 15342067 -137195192 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 3 702 2350 197 41 12 chr5 15342150 15342643 -137194616 - Lx2B LINE L1 -1 6999 6493 3 702 2312 111 17 0 chr5 15342643 15342996 -137194263 + L1_Mur2 LINE L1 4342 4700 -1177 3 702 816 65 0 0 chr5 15343774 15343881 -137193378 + (TG)n Simple_repeat Simple_repeat 1 107 0 3 702 186 43 0 0 chr5 15344385 15344408 -137192851 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 3 702 233 164 73 15 chr5 15345369 15345437 -137191822 + T-rich Low_complexity Low_complexity 6 77 0 3 702 396 59 0 0 chr5 15345829 15345880 -137191379 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 702 323 307 36 14 chr5 15346691 15346830 -137190429 - L2 LINE L2 -998 2421 2280 3 702 181 331 132 26 chr5 15347034 15347186 -137190073 + L2 LINE L2 1397 1564 -1855 3 702 434 219 51 26 chr5 15348018 15348126 -137189133 + PB1D9 SINE Alu 1 111 -9 3 702 315 65 0 0 chr5 15348126 15348172 -137189087 + (CAAT)n Simple_repeat Simple_repeat 2 47 0 3 702 935 108 71 44 chr5 15348283 15348466 -137188793 - B2_Mm2 SINE B2 -6 189 2 3 702 1784 166 63 46 chr5 15348484 15348851 -137188408 - RMER1A Other Other -10 1020 648 3 702 442 308 21 71 chr5 15349079 15349219 -137188040 - RSINE1 SINE B4 -1 164 32 3 702 261 0 0 0 chr5 15349220 15349249 -137188010 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 702 2565 34 6 30 chr5 15349955 15350289 -137186970 - L1Md_F3 LINE L1 -2 6582 6257 3 702 2851 33 0 0 chr5 15350289 15350625 -137186634 + L1Md_T LINE L1 5911 6246 -336 3 702 211 182 18 18 chr5 15351841 15351897 -137185362 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 702 445 260 94 30 chr5 15354079 15354281 -137182978 - U3 snRNA snRNA -2 215 1 3 702 457 332 34 48 chr5 15354538 15354747 -137182512 + B4A SINE B4 87 292 0 3 702 207 69 0 0 chr5 15355896 15355925 -137181334 + (T)n Simple_repeat Simple_repeat 1 29 0 3 702 261 0 0 0 chr5 15356865 15356894 -137180365 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 702 301 276 13 0 chr5 15357524 15357600 -137179659 + ID4_ SINE ID 5 81 -2 3 702 1870 179 52 6 chr5 15357695 15358043 -137179216 + ORR1C1 LTR MaLR 1 364 -14 3 702 540 0 0 0 chr5 15358956 15359016 -137178243 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 702 421 372 22 98 chr5 15359022 15359338 -137177921 - B4A SINE B4 0 292 1 3 702 24 32 0 0 chr5 15359358 15359389 -137177870 + AT_rich Low_complexity Low_complexity 1 31 0 3 702 462 290 90 0 chr5 15359389 15359534 -137177725 - RSINE1 SINE B4 -4 161 4 3 702 874 168 0 0 chr5 15359694 15359831 -137177428 + B1_Mur4 SINE Alu 6 142 -8 3 702 272 27 0 26 chr5 15359851 15359889 -137177370 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 3 702 210 122 0 47 chr5 15360918 15360961 -137176298 + A-rich Low_complexity Low_complexity 3 43 0 3 702 241 129 71 0 chr5 15361111 15361181 -137176078 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 702 275 106 45 15 chr5 15361838 15361905 -137175354 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 702 628 272 90 25 chr5 15362173 15362461 -137174798 + RMER20B LTR ERVK 234 591 -36 3 702 230 279 45 107 chr5 15363784 15363961 -137173298 - MER3 DNA MER1_type -29 180 15 3 702 2886 43 3 0 chr5 15364277 15364622 -137172637 + ORR1A0 LTR MaLR 1 346 0 3 702 309 372 1 20 chr5 15364706 15364879 -137172380 + Lx9 LINE L1 7049 7347 -297 3 702 310 337 122 37 chr5 15364879 15365017 -137172242 + Lx8 LINE L1 7178 7316 -157 3 702 408 20 0 0 chr5 15365017 15365066 -137172193 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 702 310 337 122 37 chr5 15365066 15365198 -137172061 + Lx8 LINE L1 7317 7471 -2 3 702 598 264 7 0 chr5 15365296 15365440 -137171819 + B1_Mur2 SINE Alu 5 149 0 3 702 269 338 0 0 chr5 15365454 15365534 -137171725 + ID4_ SINE ID 2 81 -2 3 702 21 0 0 0 chr5 15366553 15366574 -137170685 + AT_rich Low_complexity Low_complexity 1 21 0 3 702 1342 267 46 20 chr5 15367380 15367720 -137169539 + MTD LTR MaLR 1 344 -75 3 702 405 0 0 0 chr5 15367720 15367765 -137169494 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 3 702 1342 267 46 20 chr5 15367765 15367818 -137169441 + MTD LTR MaLR 345 403 -16 3 702 2128 200 88 94 chr5 15367913 15368247 -137169012 + RMER6D LTR ERVK 1 358 -362 3 702 549 76 0 0 chr5 15368247 15368326 -137168933 + (CAGTT)n Simple_repeat Simple_repeat 4 82 0 3 702 2128 200 88 94 chr5 15368326 15368714 -137168545 + RMER6D LTR ERVK 359 719 -1 3 702 218 329 80 34 chr5 15368913 15369001 -137168258 + B1F1 SINE Alu 2 93 -56 3 702 225 343 39 19 chr5 15370586 15370690 -137166569 + B4A SINE B4 183 288 -4 3 702 241 280 20 120 chr5 15370977 15371127 -137166132 + RLTR43B LTR ERVK 241 375 0 3 702 21 57 0 0 chr5 15371224 15371259 -137166000 + AT_rich Low_complexity Low_complexity 1 35 0 3 702 300 111 0 0 chr5 15371342 15371387 -137165872 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 702 307 281 11 22 chr5 15371896 15371987 -137165272 - PB1D10 SINE Alu -21 96 7 4 702 234 270 0 31 chr5 15371929 15371994 -137165265 - B4A SINE B4 -145 147 85 4 702 334 289 90 21 chr5 15372162 15372307 -137164952 + MLT1A1 LTR MaLR 1 155 -253 4 702 205 368 0 0 chr5 15372348 15372408 -137164851 + polypyrimidine Low_complexity Low_complexity 59 118 0 4 702 1225 34 5 43 chr5 15372408 15372595 -137164664 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 4 702 205 368 0 0 chr5 15372595 15372648 -137164611 + polypyrimidine Low_complexity Low_complexity 6 58 0 4 702 323 307 19 38 chr5 15372695 15372800 -137164459 - PB1D10 SINE Alu 0 117 15 4 702 24 32 0 0 chr5 15374836 15374867 -137162392 + AT_rich Low_complexity Low_complexity 1 31 0 4 702 285 197 16 0 chr5 15375438 15375499 -137161760 - B3 SINE B2 -3 213 152 4 702 2083 100 48 0 chr5 15375611 15375922 -137161337 - ORR1A4 LTR MaLR -3 326 1 4 702 307 317 0 47 chr5 15376604 15376710 -137160549 - Lx9 LINE L1 -1187 6457 6357 4 702 182 37 37 0 chr5 15376720 15376747 -137160512 + (GAAAA)n Simple_repeat Simple_repeat 1 28 0 4 702 675 281 74 45 chr5 15376909 15376986 -137160273 - Lx9 LINE L1 -1459 6014 5942 4 702 293 0 27 0 chr5 15376986 15377023 -137160236 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 702 675 272 78 27 chr5 15377023 15377201 -137160058 - Lx9 LINE L1 -1703 5941 5756 4 702 2084 160 31 8 chr5 15377201 15377555 -137159704 + ORR1B2 LTR MaLR 2 363 -4 4 702 675 262 101 54 chr5 15377555 15377692 -137159567 - Lx9 LINE L1 -1889 5755 5578 4 702 735 332 40 59 chr5 15377717 15378142 -137159117 + Lx9 LINE L1 6999 7415 -229 4 702 333 0 0 0 chr5 15378145 15378182 -137159077 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 702 1924 167 76 20 chr5 15378213 15378568 -137158691 - RLTR11A LTR ERVK 0 528 154 4 702 318 293 6 102 chr5 15379092 15379259 -137158000 - Lx9 LINE L1 -208 7436 7286 4 702 207 0 0 0 chr5 15379724 15379747 -137157512 + (T)n Simple_repeat Simple_repeat 1 23 0 4 702 261 0 0 0 chr5 15382254 15382283 -137154976 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 702 352 296 73 113 chr5 15382286 15382421 -137154838 - B4 SINE B4 0 292 174 4 702 210 37 0 0 chr5 15382421 15382448 -137154811 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 4 702 352 296 73 113 chr5 15382448 15382613 -137154646 - B4 SINE B4 -119 173 4 4 702 26 30 0 0 chr5 15382782 15382815 -137154444 + AT_rich Low_complexity Low_complexity 1 33 0 4 702 1723 193 178 33 chr5 15384516 15384603 -137152656 + RLTR31A_Mm LTR ERVK 1 88 -496 4 702 579 15 0 0 chr5 15384603 15384671 -137152588 + (GA)n Simple_repeat Simple_repeat 2 69 0 4 702 1723 193 178 33 chr5 15384671 15385093 -137152166 + RLTR31A_Mm LTR ERVK 89 584 0 4 702 25 65 0 0 chr5 15385356 15385402 -137151857 + AT_rich Low_complexity Low_complexity 1 46 0 4 702 277 151 19 19 chr5 15385491 15385545 -137151714 - MLT1D LTR MaLR -4 501 448 4 702 1125 52 0 0 chr5 15386120 15386256 -137151003 + B1_Mus2 SINE Alu 1 136 -11 4 702 419 0 20 0 chr5 15386256 15386307 -137150952 + (CAAAA)n Simple_repeat Simple_repeat 4 55 0 4 702 232 246 122 14 chr5 15386358 15386432 -137150827 + ID4 SINE ID 2 83 0 4 702 427 289 188 31 chr5 15386579 15387089 -137150170 + L1M5 LINE L1 2420 3009 -3137 4 702 302 303 36 72 chr5 15387143 15387310 -137149949 + L1MC4 LINE L1 6688 6848 -1113 4 702 516 316 74 35 chr5 15387449 15387965 -137149294 + L1MC4 LINE L1 7150 7777 -218 4 702 339 25 0 0 chr5 15388049 15388089 -137149170 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 702 509 337 28 11 chr5 15388136 15388313 -137148946 - MLT1D LTR MaLR -46 459 280 4 702 4176 203 34 112 chr5 15388697 15389984 -137147275 + RMER1A Other Other 1 1030 0 4 702 463 328 75 42 chr5 15390240 15390667 -137146592 + Lx8 LINE L1 6989 7429 -44 4 702 184 195 0 0 chr5 15390737 15390778 -137146481 + MIRc SINE MIR 186 226 -42 4 702 5860 79 3 5 chr5 15390791 15391568 -137145691 - L1_Mus3 LINE L1 -2 6636 5862 4 702 3693 36 36 0 chr5 15391567 15392011 -137145248 - L1Md_T LINE L1 0 6582 6123 4 702 675 239 62 57 chr5 15392416 15392451 -137144808 - B3 SINE B2 -36 180 152 4 702 252 0 0 0 chr5 15392451 15392479 -137144780 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 702 465 19 0 0 chr5 15392479 15392532 -137144727 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 702 994 116 0 0 chr5 15392532 15392672 -137144587 - B2_Mm2 SINE B2 -65 151 3 4 702 450 0 0 0 chr5 15392673 15392723 -137144536 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 702 771 11 0 0 chr5 15392836 15392924 -137144335 + (TCCC)n Simple_repeat Simple_repeat 3 90 0 4 702 415 277 118 64 chr5 15393018 15393238 -137144021 - MER90 LTR ERV1 -310 265 34 4 702 785 177 0 6 chr5 15394721 15394759 -137142500 + polypyrimidine Low_complexity Low_complexity 128 165 0 4 702 1515 28 0 0 chr5 15394759 15394939 -137142320 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 702 785 177 0 6 chr5 15394939 15395065 -137142194 + polypyrimidine Low_complexity Low_complexity 3 127 0 4 702 402 57 0 0 chr5 15395090 15395143 -137142116 + (CATA)n Simple_repeat Simple_repeat 2 54 0 4 702 329 384 120 76 chr5 15395205 15395704 -137141555 - L1MDa LINE L1 -5389 1244 724 4 702 230 125 0 0 chr5 15395767 15395799 -137141460 - MLT1A1 LTR MaLR -69 339 308 4 702 27361 68 17 3 chr5 15396134 15400633 -137136626 - L1Md_F2 LINE L1 0 6582 2019 4 702 251 317 12 12 chr5 15402316 15402399 -137134860 + MLT1B LTR MaLR 1 83 -384 4 702 269 277 86 43 chr5 15402442 15402559 -137134700 + B1_Mur3 SINE Alu 8 129 -20 4 702 561 248 119 107 chr5 15402500 15402753 -137134506 + MLT1B LTR MaLR 134 389 -1 4 702 519 0 42 0 chr5 15403081 15403152 -137134107 + (TATAG)n Simple_repeat Simple_repeat 2 75 0 4 702 3737 129 138 5 chr5 15403594 15404238 -137133021 + RMER19A LTR ERVK 8 737 0 4 702 2134 151 21 103 chr5 15404926 15405392 -137131867 - RLTR23 LTR ERV1 -2 428 1 4 702 294 143 0 0 chr5 15405894 15405943 -137131316 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 4 702 1104 145 5 78 chr5 15406449 15406666 -137130593 - ORR1D1 LTR MaLR -173 201 1 4 702 279 0 0 0 chr5 15407641 15407672 -137129587 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 702 2274 163 27 71 chr5 15407674 15408196 -137129063 - L1_Mur2 LINE L1 -1073 4804 4306 4 702 539 106 0 12 chr5 15408309 15408395 -137128864 + ORR1D1 LTR MaLR 1 85 -289 4 702 384 179 0 0 chr5 15408398 15408465 -137128794 + ORR1D1 LTR MaLR 308 374 0 4 702 3426 25 5 0 chr5 15408492 15408886 -137128373 + MTA_Mm LTR MaLR 1 396 0 4 702 700 130 9 0 chr5 15409346 15409454 -137127805 + RLTR25A LTR ERVK 591 699 -404 4 702 1656 143 74 52 chr5 15409451 15409843 -137127416 - RLTR25B LTR ERVK -502 526 157 4 702 2856 9 3 0 chr5 15409853 15410174 -137127085 - RLTRETN_Mm LTR ERVK 0 322 1 4 702 3992 14 8 2 chr5 15410174 15410656 -137126603 - MMETn-int LTR ERVK 0 4844 4360 4 702 377 208 69 10 chr5 15410661 15410763 -137126496 - RLTR25B LTR ERVK -169 358 251 4 702 790 258 10 31 chr5 15412797 15412989 -137124270 - B3 SINE B2 -5 211 24 4 702 1036 156 0 0 chr5 15413494 15413661 -137123598 - MT2B LTR ERVL 0 601 435 4 702 1731 200 162 46 chr5 15413656 15414223 -137123036 - RMER13B LTR ERVK -4 904 272 4 702 1566 225 62 33 chr5 15414209 15414726 -137122533 - RMER17B LTR ERVK -417 489 1 4 702 2719 90 84 12 chr5 15414726 15415123 -137122136 - MT2B2 LTR ERVL -158 426 1 4 702 243 245 18 36 chr5 15415506 15415616 -137121643 + CT-rich Low_complexity Low_complexity 3 110 0 4 702 1049 116 121 0 chr5 15416335 15416508 -137120751 - B2_Mm2 SINE B2 0 195 2 4 702 1263 27 0 7 chr5 15417007 15417155 -137120104 - B1_Mus1 SINE Alu 0 148 2 4 702 217 359 19 0 chr5 15417671 15417774 -137119485 + L2 LINE L2 2347 2451 -968 4 702 217 386 109 9 chr5 15417973 15418203 -137119056 + L2 LINE L2 2502 2754 -665 4 702 4338 73 52 8 chr5 15419825 15420442 -137116817 + L1Md_F2 LINE L1 5939 6582 0 4 702 1995 159 3 0 chr5 15420538 15420858 -137116401 + ORR1A2 LTR MaLR 5 325 -2 4 702 700 244 65 24 chr5 15421496 15421664 -137115595 + B3 SINE B2 1 175 -41 4 702 279 0 0 0 chr5 15422534 15422565 -137114694 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 702 23 33 0 0 chr5 15422570 15422600 -137114659 + AT_rich Low_complexity Low_complexity 1 30 0 4 702 1272 159 19 0 chr5 15423583 15423797 -137113462 - URR1B DNA MER1_type 0 225 8 4 702 387 0 0 0 chr5 15423891 15423934 -137113325 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 4 702 1075 66 0 0 chr5 15423934 15424070 -137113189 - B1_Mm SINE Alu -9 138 3 4 702 261 0 0 0 chr5 15424144 15424173 -137113086 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 702 666 65 0 0 chr5 15424173 15424264 -137112995 + (GA)n Simple_repeat Simple_repeat 1 92 0 4 702 21 0 0 0 chr5 15425067 15425088 -137112171 + AT_rich Low_complexity Low_complexity 1 21 0 4 702 235 301 226 0 chr5 15425316 15425408 -137111851 + B1F SINE Alu 23 135 -14 4 702 2419 167 2 85 chr5 15425408 15425727 -137111532 - MTC LTR MaLR 0 421 119 4 702 3990 66 0 2 chr5 15425727 15426228 -137111031 + L1_Mus2 LINE L1 6059 6558 -8 4 702 3409 58 18 0 chr5 15426234 15426669 -137110590 + L1_Mus1 LINE L1 6123 6565 -2 4 702 2419 167 2 85 chr5 15426669 15426801 -137110458 - MTC LTR MaLR -303 118 1 4 702 246 136 0 0 chr5 15426816 15426860 -137110399 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 4 702 378 0 0 0 chr5 15427174 15427216 -137110043 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 702 315 0 0 0 chr5 15427216 15427250 -137110009 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 702 603 309 107 59 chr5 15427470 15427910 -137109349 - MLT1D LTR MaLR -5 500 40 4 702 21 0 0 0 chr5 15428160 15428181 -137109078 + AT_rich Low_complexity Low_complexity 1 21 0 4 702 243 396 14 0 chr5 15428546 15428685 -137108574 + B1F SINE Alu 1 141 -8 4 702 758 320 82 8 chr5 15428985 15429240 -137108019 - B4 SINE B4 -17 275 2 4 702 322 378 18 0 chr5 15430684 15430795 -137106464 + MER5A DNA MER1_type 44 156 -33 4 702 717 244 66 4 chr5 15431288 15431559 -137105700 - L1MB7 LINE L1 -204 5980 5693 4 702 308 369 9 18 chr5 15431573 15431686 -137105573 - PB1D10 SINE Alu -2 115 4 5 702 191 0 0 93 chr5 15431687 15431730 -137105529 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 5 702 372 383 0 18 chr5 15432507 15432616 -137104643 - PB1D10 SINE Alu -8 109 3 5 702 21 36 0 0 chr5 15432744 15432772 -137104487 + AT_rich Low_complexity Low_complexity 1 28 0 5 702 225 0 0 0 chr5 15433148 15433173 -137104086 + (T)n Simple_repeat Simple_repeat 1 25 0 5 702 206 348 14 14 chr5 15433241 15433311 -137103948 + MIR SINE MIR 6 75 -187 5 702 353 238 88 62 chr5 15433347 15433483 -137103776 + B1F SINE Alu 24 146 -3 5 702 432 0 0 0 chr5 15433564 15433612 -137103647 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 5 702 249 314 9 0 chr5 15434407 15434512 -137102747 + L1M5 LINE L1 5781 5886 -558 5 702 959 86 7 0 chr5 15435878 15436017 -137101242 + (GGAA)n Simple_repeat Simple_repeat 3 142 0 5 702 198 103 0 0 chr5 15436941 15436970 -137100289 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 5 702 549 198 0 94 chr5 15437145 15437262 -137099997 + B1_Mur2 SINE Alu 5 110 -39 5 702 605 80 0 11 chr5 15437280 15437369 -137099890 + (GGAA)n Simple_repeat Simple_repeat 1 88 0 5 702 248 0 0 30 chr5 15437509 15437542 -137099717 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 5 702 197 108 27 0 chr5 15438617 15438654 -137098605 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 702 189 0 0 0 chr5 15439515 15439536 -137097723 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 5 702 190 169 15 15 chr5 15440443 15440509 -137096750 + C-rich Low_complexity Low_complexity 4 69 0 5 702 187 29 0 79 chr5 15440666 15440704 -137096555 + (CCCG)n Simple_repeat Simple_repeat 1 35 0 5 702 198 266 0 0 chr5 15445663 15445742 -137091517 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 702 294 206 0 0 chr5 15446272 15446335 -137090924 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 702 226 47 0 65 chr5 15449144 15449190 -137088069 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 5 702 2168 127 54 35 chr5 15449834 15450203 -137087056 + ORR1C2 LTR MaLR 9 384 0 5 702 376 257 76 0 chr5 15450823 15450928 -137086331 - PB1D10 SINE Alu -3 114 2 5 702 9433 4 0 0 chr5 15452138 15453364 -137083895 - L1Md_A LINE L1 -570 6012 4787 5 702 4921 2 0 0 chr5 15453364 15453904 -137083355 + L1Md_A LINE L1 6043 6582 0 5 702 393 22 0 0 chr5 15454416 15454462 -137082797 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 702 370 59 29 29 chr5 15454750 15454820 -137082439 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 5 702 273 261 164 30 chr5 15456105 15456239 -137081020 - MER105 DNA DNA -3 201 50 5 702 366 263 16 3 chr5 15456241 15456381 -137080878 + L1M3 LINE L1 4885 5027 -1119 5 702 273 323 34 60 chr5 15456905 15457111 -137080148 - MLT1E1 LTR MaLR -344 336 136 5 702 192 77 0 0 chr5 15458096 15458122 -137079137 + (TTA)n Simple_repeat Simple_repeat 2 27 0 5 702 738 0 41 0 chr5 15458133 15458230 -137079029 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 5 702 524 256 23 15 chr5 15458230 15458361 -137078898 - B1_Mur3 SINE Alu -11 138 7 5 702 495 290 58 17 chr5 15458758 15458930 -137078329 - B3 SINE B2 -34 182 4 5 702 33 56 0 0 chr5 15458944 15458998 -137078261 + AT_rich Low_complexity Low_complexity 1 54 0 5 702 7891 36 1 3 chr5 15459115 15460341 -137076918 - L1Md_F2 LINE L1 -3 6579 5357 5 702 226 302 69 11 chr5 15460373 15460460 -137076799 - PB1D10 SINE Alu -22 95 4 5 702 316 200 0 91 chr5 15460971 15461048 -137076211 + MT2B LTR ERVL 170 239 -362 5 702 619 192 42 0 chr5 15460980 15461100 -137076159 + B1_Mur1 SINE Alu 13 137 -12 5 702 911 96 7 0 chr5 15461100 15461236 -137076023 + (CAAAG)n Simple_repeat Simple_repeat 3 139 0 5 702 21 36 0 0 chr5 15462025 15462053 -137075206 + AT_rich Low_complexity Low_complexity 1 28 0 5 702 4655 118 13 21 chr5 15462260 15462970 -137074289 - Lx2 LINE L1 -1 6996 6293 5 702 198 0 0 0 chr5 15463207 15463229 -137074030 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 702 988 156 38 16 chr5 15463595 15463778 -137073481 - B2_Mm2 SINE B2 -8 187 1 5 702 26 0 0 0 chr5 15464520 15464546 -137072713 + AT_rich Low_complexity Low_complexity 1 26 0 5 702 504 358 10 24 chr5 15464879 15465088 -137072171 - MER20 DNA MER1_type 0 219 14 5 702 2014 186 44 7 chr5 15465210 15465616 -137071643 + MTC LTR MaLR 1 421 0 5 703 369 325 139 25 chr5 15466993 15467195 -137070064 + MLT1C LTR MaLR 5 229 -238 5 703 246 176 0 0 chr5 15467544 15467595 -137069664 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 703 243 286 13 0 chr5 15469070 15469147 -137068112 + (TA)n Simple_repeat Simple_repeat 1 78 0 5 703 204 135 0 0 chr5 15469147 15469184 -137068075 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 703 237 259 0 36 chr5 15469284 15469340 -137067919 - tRNA-Ala-GCY_ tRNA tRNA -20 55 2 5 703 30 89 0 0 chr5 15469531 15469610 -137067649 + AT_rich Low_complexity Low_complexity 1 79 0 5 703 254 248 0 9 chr5 15470047 15470157 -137067102 + GA-rich Low_complexity Low_complexity 2 110 0 5 703 1173 105 4 99 chr5 15470254 15470487 -137066772 + Lx3_Mus LINE L1 6798 7008 -1 5 703 305 222 0 16 chr5 15470828 15470892 -137066367 - HAL1-3A_ME LINE L1 -821 2037 1975 5 703 346 296 11 0 chr5 15470959 15471047 -137066212 - RMER30 DNA MER1_type -1 201 113 5 703 758 235 23 6 chr5 15471049 15471220 -137066039 + MTD LTR MaLR 12 185 -234 5 703 495 293 43 0 chr5 15471231 15471371 -137065888 + MTD LTR MaLR 232 377 -42 5 703 239 396 50 46 chr5 15472109 15472347 -137064912 - MIR SINE MIR -2 260 22 5 703 212 323 83 103 chr5 15473828 15474080 -137063179 - L2c LINE L2 -14 3373 3127 5 703 249 327 101 55 chr5 15475916 15476133 -137061126 + Charlie23a DNA MER1_type 4 230 -109 5 703 985 116 0 20 chr5 15479121 15479271 -137057988 - B1_Mus2 SINE Alu 0 147 1 5 703 1176 250 149 11 chr5 15479472 15479828 -137057431 + MTD LTR MaLR 1 405 -14 5 703 285 51 0 0 chr5 15480045 15480084 -137057175 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 703 289 155 0 40 chr5 15480188 15480262 -137056997 + CT-rich Low_complexity Low_complexity 2 72 0 5 703 684 242 116 5 chr5 15481409 15481608 -137055651 - Lx8 LINE L1 -704 6769 6549 5 703 809 307 90 34 chr5 15481632 15482020 -137055239 - BGLII_B LTR ERVK -27 414 5 5 703 930 270 40 7 chr5 15482026 15482298 -137054961 - Lx8 LINE L1 -939 6534 6254 5 703 1181 309 39 9 chr5 15482365 15482440 -137054819 + Lx8 LINE L1 6784 6858 -615 5 703 627 14 0 0 chr5 15482440 15482512 -137054747 + (TTC)n Simple_repeat Simple_repeat 2 73 0 5 703 1181 309 39 9 chr5 15482512 15482877 -137054382 + Lx8 LINE L1 6859 7236 -237 5 703 1107 56 0 34 chr5 15485684 15485831 -137051428 - B1_Mus1 SINE Alu -4 144 3 5 703 794 116 9 0 chr5 15485863 15485995 -137051264 - B2_Mm1a SINE B2 0 193 61 5 703 27 0 0 0 chr5 15486629 15486656 -137050603 + AT_rich Low_complexity Low_complexity 1 27 0 5 703 387 294 39 7 chr5 15486812 15486966 -137050293 - L1MA6 LINE L1 -80 6220 6062 5 703 477 0 0 0 chr5 15487534 15487587 -137049672 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 703 181 221 35 159 chr5 15489195 15489308 -137047951 - L3b LINE CR1 -186 296 198 5 703 247 191 0 29 chr5 15489633 15489703 -137047556 + CT-rich Low_complexity Low_complexity 1 68 0 5 703 722 322 65 19 chr5 15490018 15490328 -137046931 - MLT1A LTR MaLR -15 359 36 5 703 493 115 11 11 chr5 15492618 15492706 -137044553 + (TA)n Simple_repeat Simple_repeat 1 88 0 5 703 21 0 0 0 chr5 15493026 15493047 -137044212 + AT_rich Low_complexity Low_complexity 1 21 0 5 703 28 0 0 0 chr5 15493431 15493459 -137043800 + AT_rich Low_complexity Low_complexity 1 28 0 5 703 469 94 24 0 chr5 15493489 15493574 -137043685 + (GA)n Simple_repeat Simple_repeat 1 87 0 5 703 274 279 118 55 chr5 15493891 15494001 -137043258 - PB1D7 SINE Alu -3 117 1 5 703 396 0 0 0 chr5 15494001 15494045 -137043214 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 703 21 100 0 0 chr5 15494213 15494283 -137042976 + AT_rich Low_complexity Low_complexity 1 70 0 5 703 226 211 0 0 chr5 15494507 15494559 -137042700 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 703 468 0 0 0 chr5 15494559 15494611 -137042648 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 703 509 199 0 6 chr5 15494647 15494809 -137042450 + (CA)n Simple_repeat Simple_repeat 2 162 0 5 703 270 0 0 0 chr5 15494853 15494883 -137042376 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 5 703 237 326 49 39 chr5 15494901 15495003 -137042256 - PB1D10 SINE Alu -10 107 5 5 703 459 0 0 0 chr5 15495005 15495056 -137042203 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 5 703 291 71 0 0 chr5 15496247 15496289 -137040970 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 703 288 0 0 0 chr5 15496289 15496320 -137040939 + (GA)n Simple_repeat Simple_repeat 1 32 0 5 703 315 0 0 0 chr5 15496878 15496913 -137040346 + (T)n Simple_repeat Simple_repeat 1 35 0 5 703 300 70 0 0 chr5 15498287 15498330 -137038929 + (TATG)n Simple_repeat Simple_repeat 1 43 0 5 703 410 0 20 0 chr5 15498330 15498380 -137038879 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 5 703 430 347 20 13 chr5 15498394 15498543 -137038716 - RSINE1 SINE B4 0 165 16 5 703 21 82 0 0 chr5 15498890 15498939 -137038320 + AT_rich Low_complexity Low_complexity 1 49 0 5 703 234 0 0 0 chr5 15499646 15499672 -137037587 + (TC)n Simple_repeat Simple_repeat 2 27 0 5 703 222 298 185 10 chr5 15501276 15501476 -137035783 - L2a LINE L2 -90 3336 3102 1 703 808 180 175 0 chr5 15502718 15502901 -137034358 - B3 SINE B2 -1 215 1 2 703 204 67 0 0 chr5 15503358 15503388 -137033871 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 703 531 0 0 0 chr5 15503515 15503574 -137033685 + (CAAAG)n Simple_repeat Simple_repeat 1 59 0 4 703 458 268 80 0 chr5 15503720 15503832 -137033427 + RSINE1 SINE B4 4 124 -41 5 703 220 396 48 68 chr5 15503832 15503926 -137033333 + B3 SINE B2 2 203 -13 6 703 204 111 0 0 chr5 15503926 15503962 -137033297 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 703 308 295 21 21 chr5 15504067 15504164 -137033095 + RSINE1 SINE B4 5 101 -64 8 703 181 115 0 88 chr5 15504208 15504265 -137032994 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 9 703 213 278 22 22 chr5 15504287 15504379 -137032880 + (CATA)n Simple_repeat Simple_repeat 2 93 0 1 703 634 282 73 76 chr5 15504958 15505288 -137031971 + MTE2a LTR MaLR 1 329 -50 1 703 276 148 16 47 chr5 15505552 15505616 -137031643 - MTE2a LTR MaLR 0 379 318 1 703 1008 146 0 0 chr5 15506049 15506227 -137031032 + (TC)n Simple_repeat Simple_repeat 1 178 0 1 703 558 176 20 0 chr5 15506234 15506382 -137030877 + CT-rich Low_complexity Low_complexity 1 151 0 1 703 240 348 76 76 chr5 15506382 15506699 -137030560 - RLTR12B LTR ERVK -194 334 18 1 703 479 60 15 0 chr5 15509080 15509147 -137028112 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 703 206 378 89 0 chr5 15509444 15509579 -137027680 + MIR SINE MIR 86 232 -30 1 703 228 205 0 0 chr5 15510418 15510457 -137026802 + C-rich Low_complexity Low_complexity 1 39 0 1 703 466 148 34 11 chr5 15512349 15512438 -137024821 - B1_Mur2 SINE Alu -57 92 2 1 703 512 274 12 25 chr5 15512438 15512520 -137024739 - B4A SINE B4 -206 86 7 2 703 23 0 0 0 chr5 15512657 15512680 -137024579 + AT_rich Low_complexity Low_complexity 1 23 0 2 703 838 260 69 22 chr5 15513417 15513692 -137023567 + MTE2a LTR MaLR 10 297 -82 2 703 238 237 70 30 chr5 15513744 15513844 -137023415 - MER34 LTR ERV1 -62 480 377 2 703 450 0 0 0 chr5 15514234 15514284 -137022975 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 703 294 29 0 0 chr5 15514592 15514627 -137022632 + (T)n Simple_repeat Simple_repeat 1 35 0 2 703 396 189 14 0 chr5 15514714 15514788 -137022471 + ID4 SINE ID 3 77 -6 2 703 254 313 69 29 chr5 15515836 15515938 -137021321 + MER34 LTR ERV1 401 506 -36 2 703 345 24 0 0 chr5 15516498 15516540 -137020719 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 703 207 0 0 0 chr5 15517155 15517178 -137020081 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 703 284 227 0 11 chr5 15520246 15520335 -137016924 + GA-rich Low_complexity Low_complexity 4 91 0 3 703 258 81 0 0 chr5 15520439 15520476 -137016783 + (TGG)n Simple_repeat Simple_repeat 1 37 0 3 703 180 0 0 0 chr5 15520496 15520516 -137016743 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 703 308 307 59 24 chr5 15520867 15521037 -137016222 + B4A SINE B4 2 177 -115 3 703 800 167 214 5 chr5 15521080 15521267 -137015992 + URR1A DNA MER1_type 1 226 0 3 703 246 281 0 0 chr5 15521586 15521643 -137015616 - ID4 SINE ID -1 82 26 3 703 3115 75 0 19 chr5 15523248 15523672 -137013587 - L1_Mus1 LINE L1 0 6567 6152 3 703 385 77 0 0 chr5 15523672 15523724 -137013535 + L1_Mus1 LINE L1 6112 6163 -403 3 703 25378 89 5 4 chr5 15523715 15528453 -137008806 - L1VL1 LINE L1 -921 4962 218 3 703 189 0 0 0 chr5 15528724 15528745 -137008514 + (TTA)n Simple_repeat Simple_repeat 1 21 0 3 703 1866 194 52 45 chr5 15529040 15529591 -137007668 + RMER4A LTR ERVK 2 585 0 3 703 23 54 0 0 chr5 15531868 15531905 -137005354 + AT_rich Low_complexity Low_complexity 1 37 0 4 703 245 250 16 0 chr5 15532168 15532232 -137005027 - L1M5 LINE L1 -325 5915 5851 4 703 347 239 90 42 chr5 15532458 15532602 -137004657 - Tigger7 DNA MER2_type -189 2302 2152 4 703 306 399 0 7 chr5 15532707 15532851 -137004408 - Tigger7 DNA MER2_type -2326 165 23 4 703 22 35 0 0 chr5 15533477 15533506 -137003753 + AT_rich Low_complexity Low_complexity 1 29 0 4 703 26 0 0 0 chr5 15533869 15533895 -137003364 + AT_rich Low_complexity Low_complexity 1 26 0 4 703 369 304 9 0 chr5 15534643 15534758 -137002501 - MIR SINE MIR -75 187 72 4 703 513 247 100 0 chr5 15534766 15534916 -137002343 - MER5A1 DNA MER1_type 0 166 2 4 703 340 280 181 32 chr5 15535954 15536175 -137001084 - RMER15 LTR ERVL -14 561 308 4 703 7235 63 3 10 chr5 15536248 15537176 -137000083 + L1_Mus1 LINE L1 5645 6566 -1 4 703 362 58 0 0 chr5 15537184 15537236 -137000023 + L1Md_F2 LINE L1 6520 6571 -11 4 703 237 132 0 0 chr5 15537376 15537414 -136999845 + (GAAAA)n Simple_repeat Simple_repeat 5 42 0 5 703 1797 153 64 86 chr5 15537420 15537827 -136999432 - RMER10B LTR ERVL 0 398 1 5 703 385 277 0 0 chr5 15538290 15538373 -136998886 - RMER15-int LTR ERVL -411 4588 4506 4 703 1425 322 58 49 chr5 15538480 15538959 -136998300 - RMER15-int LTR ERVL -3306 1693 1196 4 703 1896 125 18 59 chr5 15538959 15539299 -136997960 - ORR1A4 LTR MaLR -3 326 1 5 703 1425 322 58 49 chr5 15539299 15539573 -136997686 - RMER15-int LTR ERVL -3804 1195 933 4 703 335 362 38 15 chr5 15539580 15539712 -136997547 + RSINE1 SINE B4 1 135 -30 5 703 512 373 78 29 chr5 15540270 15540656 -136996603 - RMER15-int LTR ERVL -4592 407 3 4 703 636 298 127 22 chr5 15540656 15540924 -136996335 - RMER15 LTR ERVL -5 570 275 4 703 23 33 0 0 chr5 15541758 15541788 -136995471 + AT_rich Low_complexity Low_complexity 1 30 0 5 703 302 342 54 9 chr5 15542681 15542793 -136994466 - PB1 SINE Alu -5 122 6 5 703 264 59 0 0 chr5 15543061 15543095 -136994164 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 703 195 266 74 25 chr5 15543814 15543895 -136993364 + L2a LINE L2 3300 3384 -42 5 703 1726 80 52 0 chr5 15544959 15545209 -136992050 - L1_Mus1 LINE L1 -1 6566 6304 5 703 349 23 0 0 chr5 15545209 15545253 -136992006 + L1_Mus1 LINE L1 6242 6285 -282 5 703 655 288 60 75 chr5 15545833 15546085 -136991174 + B4 SINE B4 40 287 -5 5 703 327 25 0 0 chr5 15547398 15547438 -136989821 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 703 221 221 81 86 chr5 15547493 15547602 -136989657 - MIRb SINE MIR -5 263 151 6 703 1051 110 7 0 chr5 15547924 15548070 -136989189 + B1_Mus1 SINE Alu 2 148 0 6 703 417 220 0 0 chr5 15548492 15548601 -136988658 + (TA)n Simple_repeat Simple_repeat 1 109 0 6 703 227 245 67 58 chr5 15548642 15548746 -136988513 + L1MC4 LINE L1 6640 6744 -1298 6 703 186 209 0 0 chr5 15548754 15548797 -136988462 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 703 38 51 0 0 chr5 15548989 15549048 -136988211 + AT_rich Low_complexity Low_complexity 1 59 0 6 703 3472 78 32 2 chr5 15549083 15549587 -136987672 - MusHAL1 LINE L1 -147 2565 2047 6 703 1536 67 24 5 chr5 15549587 15549820 -136987439 - L1_Mus1 LINE L1 0 6567 6350 6 703 3268 64 2 5 chr5 15549820 15550245 -136987014 + L1_Mus1 LINE L1 5950 6373 -194 6 703 2709 60 8 0 chr5 15550247 15550617 -136986642 - MusHAL1 LINE L1 -651 2061 1689 6 703 2225 82 0 0 chr5 15550615 15550918 -136986341 + MusHAL1 LINE L1 1378 1680 -1032 6 703 22 0 0 0 chr5 15551588 15551610 -136985649 + AT_rich Low_complexity Low_complexity 1 22 0 6 703 239 261 0 0 chr5 15551987 15552033 -136985226 - MIRb SINE MIR -14 254 209 7 703 258 32 0 0 chr5 15552752 15552783 -136984476 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 703 1160 209 158 19 chr5 15554610 15554976 -136982283 + MTD LTR MaLR 3 419 0 7 703 291 203 0 0 chr5 15555309 15555378 -136981881 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 703 259 213 22 14 chr5 15555344 15555482 -136981777 + (TCTA)n Simple_repeat Simple_repeat 3 141 0 7 703 284 368 26 9 chr5 15555495 15555610 -136981649 - PB1D10 SINE Alu 0 117 1 7 703 324 355 0 0 chr5 15555519 15555612 -136981647 - ID_B1 SINE B4 -52 172 80 7 703 423 0 0 0 chr5 15555632 15555679 -136981580 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 703 200 283 0 0 chr5 15556033 15556093 -136981166 + (CA)n Simple_repeat Simple_repeat 2 61 0 7 703 323 200 60 36 chr5 15556203 15556286 -136980973 - MLT1A1 LTR MaLR 0 408 324 7 703 3692 30 0 0 chr5 15556396 15556877 -136980382 + L1Md_T LINE L1 6152 6582 0 8 703 719 271 132 23 chr5 15557179 15557489 -136979770 + MLT1B LTR MaLR 1 344 -46 8 703 541 275 154 35 chr5 15559240 15559500 -136977759 - B4 SINE B4 0 292 2 8 703 972 87 0 7 chr5 15560150 15560289 -136976970 - B2_Mm2 SINE B2 -9 186 49 8 703 43 56 0 0 chr5 15560585 15560656 -136976603 + AT_rich Low_complexity Low_complexity 1 71 0 8 703 623 305 61 37 chr5 15560998 15561214 -136976045 + B4 SINE B4 86 292 0 8 703 724 162 0 35 chr5 15561471 15561644 -136975615 - Lx9 LINE L1 -1 7643 7477 8 703 583 351 55 32 chr5 15561846 15562064 -136975195 - B4 SINE B4 -69 223 1 8 703 262 296 112 15 chr5 15562990 15563196 -136974063 - L1MA8 LINE L1 -4 6287 6062 8 703 295 316 42 0 chr5 15563297 15563392 -136973867 + B3A SINE B2 2 100 -98 8 703 33 25 0 0 chr5 15563744 15563784 -136973475 + AT_rich Low_complexity Low_complexity 1 40 0 9 703 885 234 19 14 chr5 15563791 15564003 -136973256 - B3 SINE B2 -3 213 1 9 703 544 172 20 10 chr5 15564524 15564624 -136972635 + B1_Mur2 SINE Alu 29 129 -20 9 703 26 74 0 0 chr5 15564717 15564771 -136972488 + AT_rich Low_complexity Low_complexity 1 54 0 9 703 592 250 41 87 chr5 15565595 15565814 -136971445 + B3A SINE B2 1 209 -7 9 703 315 300 61 15 chr5 15565902 15566034 -136971225 + B1F SINE Alu 12 149 0 9 703 746 201 108 65 chr5 15566060 15566246 -136971013 + B3 SINE B2 4 197 -19 9 703 524 231 14 7 chr5 15566554 15566702 -136970557 + HAL1 LINE L1 2046 2194 -313 9 703 944 111 78 44 chr5 15566803 15566983 -136970276 + B2_Mm2 SINE B2 2 187 -8 9 703 213 231 0 19 chr5 15567200 15567253 -136970006 - B1_Mm SINE Alu -55 92 41 9 703 34 24 0 0 chr5 15569525 15569566 -136967693 + AT_rich Low_complexity Low_complexity 1 41 0 1 703 1016 39 0 0 chr5 15570737 15570865 -136966394 - B1_Mus1 SINE Alu 0 148 21 1 703 255 250 14 42 chr5 15570882 15570953 -136966306 + CT-rich Low_complexity Low_complexity 3 71 0 1 703 981 168 117 19 chr5 15570977 15571183 -136966076 - URR1A DNA MER1_type 0 226 1 1 703 21 0 0 0 chr5 15572084 15572105 -136965154 + AT_rich Low_complexity Low_complexity 1 21 0 1 703 37890 31 1 0 chr5 15572123 15578996 -136958263 - L1Md_T LINE L1 0 6585 1 1 703 315 257 96 29 chr5 15579073 15579177 -136958082 + MLT1A0 LTR MaLR 1 111 -254 1 703 1468 315 68 54 chr5 15579185 15580324 -136956935 - L1_Mur3 LINE L1 -188 5692 4538 1 703 1709 210 91 33 chr5 15580348 15580746 -136956513 - MTC LTR MaLR 0 421 1 1 703 239 287 162 39 chr5 15580746 15581029 -136956230 - L1M2 LINE L1 -1581 4562 4245 1 703 243 73 36 18 chr5 15581033 15581089 -136956170 + (TTTTTG)n Simple_repeat Simple_repeat 2 58 0 1 703 2394 147 125 112 chr5 15582172 15582853 -136954406 + RMER6C LTR ERVK 1 690 0 1 703 226 319 0 0 chr5 15583164 15583233 -136954026 + MLT1L LTR MaLR 540 608 -2 1 703 504 283 114 20 chr5 15583827 15584029 -136953230 + ID_B1 SINE B4 3 223 -1 1 703 2904 41 16 8 chr5 15585099 15585467 -136951792 - L1Md_F3 LINE L1 -14 6570 6200 1 703 1055 221 93 24 chr5 15585495 15585758 -136951501 - ORR1D1 LTR MaLR -124 250 8 1 703 26 0 0 0 chr5 15585941 15585967 -136951292 + AT_rich Low_complexity Low_complexity 1 26 0 1 703 3315 180 23 7 chr5 15586517 15587120 -136950139 - RLTR17 LTR ERVK -77 615 3 1 703 4650 76 3 24 chr5 15588428 15589099 -136948160 + L1Md_F2 LINE L1 5926 6582 0 1 703 249 290 100 0 chr5 15589626 15589726 -136947533 - L2a LINE L2 -14 3412 3303 1 703 206 239 0 0 chr5 15589875 15589921 -136947338 + GA-rich Low_complexity Low_complexity 4 49 0 1 703 193 301 94 31 chr5 15590343 15590439 -136946820 - L2a LINE L2 -368 3058 2957 1 703 258 79 14 87 chr5 15591226 15591261 -136945998 + T-rich Low_complexity Low_complexity 32 65 0 1 703 1153 56 0 0 chr5 15591261 15591403 -136945856 - B1_Mus1 SINE Alu -6 142 1 1 703 258 79 14 87 chr5 15591403 15591436 -136945823 + T-rich Low_complexity Low_complexity 2 31 0 1 703 21 0 0 0 chr5 15594222 15594243 -136943016 + GC_rich Low_complexity Low_complexity 1 21 0 1 703 208 81 26 26 chr5 15594652 15594690 -136942569 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 703 191 240 39 20 chr5 15595835 15595886 -136941373 + MIRm SINE MIR 95 146 -130 1 703 544 320 50 22 chr5 15596319 15596501 -136940758 - ORR1E LTR MaLR -169 190 4 1 704 231 208 27 27 chr5 15597584 15597658 -136939601 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 1 704 1537 47 0 30 chr5 15598028 15598227 -136939032 - B2_Mm1a SINE B2 0 193 1 1 704 434 136 0 12 chr5 15598752 15598834 -136938425 + (TCC)n Simple_repeat Simple_repeat 1 81 0 1 704 180 0 0 0 chr5 15599138 15599158 -136938101 + (A)n Simple_repeat Simple_repeat 1 20 0 1 704 407 219 33 93 chr5 15599978 15600129 -136937130 + MT2B LTR ERVL 113 254 -347 1 704 681 144 35 28 chr5 15600035 15600178 -136937081 + B1_Mur4 SINE Alu 6 149 -1 1 704 320 398 53 0 chr5 15600352 15600465 -136936794 - RSINE1 SINE B4 -24 141 23 1 704 405 177 0 0 chr5 15600641 15600720 -136936539 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 704 452 301 21 7 chr5 15601313 15601457 -136935802 - B4A SINE B4 -145 147 2 1 704 336 211 0 0 chr5 15601846 15601922 -136935337 + (TATATG)n Simple_repeat Simple_repeat 6 81 0 1 704 29 28 0 0 chr5 15602039 15602075 -136935184 + AT_rich Low_complexity Low_complexity 1 36 0 1 704 314 325 17 42 chr5 15602176 15602295 -136934964 + PB1D7 SINE Alu 5 120 0 1 704 275 160 0 0 chr5 15602391 15602441 -136934818 + L1MA9 LINE L1 6260 6309 -3 1 704 2839 46 0 14 chr5 15603449 15603800 -136933459 + ORR1A1 LTR MaLR 1 346 0 1 704 219 404 87 10 chr5 15604406 15604601 -136932658 + MIRb SINE MIR 53 262 0 1 704 550 171 176 52 chr5 15605119 15605255 -136932004 - ORR1D1 LTR MaLR -212 162 10 1 704 502 87 0 0 chr5 15606066 15606135 -136931124 - B1_Mus1 SINE Alu -73 75 7 1 704 215 225 0 0 chr5 15606339 15606379 -136930880 + (TATG)n Simple_repeat Simple_repeat 4 43 0 1 704 243 221 0 68 chr5 15606424 15606497 -136930762 + CT-rich Low_complexity Low_complexity 3 70 0 1 704 4186 40 2 0 chr5 15606503 15607002 -136930257 + L1Md_T LINE L1 6083 6582 0 1 704 228 67 0 0 chr5 15608027 15608057 -136929202 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1 704 1590 188 81 13 chr5 15608368 15608751 -136928508 - RLTR28B LTR ERVL -72 409 1 1 704 235 276 84 19 chr5 15609537 15609644 -136927615 + Tigger7 DNA MER2_type 410 523 -1968 1 704 992 96 0 0 chr5 15609872 15610007 -136927252 + B1_Mus1 SINE Alu 2 136 -12 1 704 210 174 0 0 chr5 15613019 15613065 -136924194 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 704 543 360 70 27 chr5 15613689 15614092 -136923167 + MTE-int LTR MaLR 81 500 -1080 1 704 927 129 85 34 chr5 15614235 15614412 -136922847 - B2_Mm2 SINE B2 0 195 10 1 704 2690 112 12 17 chr5 15616832 15617250 -136920009 - RLTR23 LTR ERV1 -14 416 1 1 704 353 214 120 20 chr5 15617633 15617733 -136919526 - B3A SINE B2 -87 111 2 1 704 21 0 0 0 chr5 15618113 15618134 -136919125 + AT_rich Low_complexity Low_complexity 1 21 0 1 704 1083 43 0 7 chr5 15618427 15618569 -136918690 - B1_Mus1 SINE Alu -1 147 7 1 704 522 114 0 0 chr5 15618771 15618850 -136918409 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 704 498 295 52 22 chr5 15619282 15619549 -136917710 + L1MA6 LINE L1 5996 6270 -30 1 704 25 0 0 0 chr5 15619573 15619598 -136917661 + AT_rich Low_complexity Low_complexity 1 25 0 1 704 456 35 0 0 chr5 15620249 15620307 -136916952 + (TTTC)n Simple_repeat Simple_repeat 1 58 0 1 704 665 24 12 0 chr5 15620309 15620392 -136916867 + (TTCTC)n Simple_repeat Simple_repeat 4 87 0 1 704 21 0 0 0 chr5 15620612 15620633 -136916626 + AT_rich Low_complexity Low_complexity 1 21 0 1 704 227 220 11 0 chr5 15620874 15620965 -136916294 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 704 22 0 0 0 chr5 15621099 15621121 -136916138 + AT_rich Low_complexity Low_complexity 1 22 0 1 704 1681 183 22 20 chr5 15621943 15622252 -136915007 - RLTR15 LTR ERVK -1 358 53 1 704 384 59 0 0 chr5 15622252 15622303 -136914956 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1 704 1681 183 22 20 chr5 15622303 15622350 -136914909 - RLTR15 LTR ERVK -307 52 2 1 704 276 257 28 56 chr5 15622399 15622506 -136914753 - PB1D10 SINE Alu -11 106 3 1 704 250 372 0 0 chr5 15624666 15624768 -136912491 + CT-rich Low_complexity Low_complexity 4 105 0 1 704 932 151 0 14 chr5 15625560 15625708 -136911551 + B1_Mus1 SINE Alu 1 146 -2 1 704 450 0 0 0 chr5 15626602 15626652 -136910607 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 704 2749 138 54 16 chr5 15628128 15628627 -136908632 - RLTR28 LTR ERVL -4 520 3 1 704 705 97 0 0 chr5 15628660 15628763 -136908496 + (GA)n Simple_repeat Simple_repeat 2 104 0 1 704 299 85 21 0 chr5 15628763 15628810 -136908449 + (GAAAA)n Simple_repeat Simple_repeat 3 50 0 1 704 613 248 7 40 chr5 15629742 15629893 -136907366 - B1_Mur1 SINE Alu -3 146 1 1 704 229 310 91 11 chr5 15630291 15630379 -136906880 - B4 SINE B4 0 292 198 1 704 752 284 26 16 chr5 15630686 15630879 -136906380 + B3 SINE B2 1 195 -21 1 704 201 250 0 35 chr5 15630934 15630992 -136906267 + CT-rich Low_complexity Low_complexity 3 58 0 1 704 455 216 8 59 chr5 15631137 15631255 -136906004 + Charlie1a DNA MER1_type 856 967 -488 1 704 565 317 0 66 chr5 15631281 15631543 -136905716 + ORR1E LTR MaLR 1 251 -123 1 704 270 0 0 0 chr5 15631543 15631573 -136905686 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 1 704 524 319 17 143 chr5 15631573 15631730 -136905529 + ORR1E LTR MaLR 252 367 -7 1 704 266 280 74 45 chr5 15631738 15632057 -136905202 + Charlie1a DNA MER1_type 985 1455 0 1 704 36 0 0 0 chr5 15632963 15632999 -136904260 + AT_rich Low_complexity Low_complexity 1 36 0 1 704 24 67 0 0 chr5 15633128 15633173 -136904086 + AT_rich Low_complexity Low_complexity 1 45 0 1 704 414 0 0 0 chr5 15633245 15633291 -136903968 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 704 212 328 125 0 chr5 15633293 15633357 -136903902 - ID SINE ID -151 73 2 1 704 26 30 0 0 chr5 15633755 15633788 -136903471 + AT_rich Low_complexity Low_complexity 1 33 0 1 704 253 254 28 0 chr5 15634105 15634176 -136903083 + L1MA6 LINE L1 5866 5938 -362 1 704 183 42 0 0 chr5 15634677 15634701 -136902558 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 704 423 0 0 0 chr5 15635060 15635107 -136902152 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 704 362 301 103 34 chr5 15635119 15635236 -136902023 - B1_Mur1 SINE Alu -22 127 3 1 704 272 374 17 42 chr5 15635236 15635294 -136901965 - B4A SINE B4 -205 87 33 1 704 243 323 47 31 chr5 15635318 15635382 -136901877 + ID4 SINE ID 16 80 -3 1 704 827 164 12 0 chr5 15636009 15636174 -136901085 + CT-rich Low_complexity Low_complexity 3 169 0 1 704 294 244 109 109 chr5 15636458 15636596 -136900663 + ID_B1 SINE B4 80 217 -7 1 704 205 105 53 0 chr5 15637096 15637134 -136900125 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 1 704 308 293 42 70 chr5 15638103 15638246 -136899013 + MLT1A0 LTR MaLR 151 289 -76 1 704 509 230 46 56 chr5 15639325 15639541 -136897718 - B3 SINE B2 0 216 3 1 704 309 26 0 0 chr5 15640658 15640696 -136896563 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 704 264 127 0 0 chr5 15640704 15640759 -136896500 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 704 350 282 88 26 chr5 15640895 15641121 -136896138 - L1MA8 LINE L1 -16 6275 6036 2 704 283 121 45 67 chr5 15641162 15641251 -136896008 - Lx9 LINE L1 -60 7584 7498 2 704 360 0 0 0 chr5 15641253 15641293 -136895966 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 704 21 0 0 0 chr5 15641433 15641454 -136895805 + AT_rich Low_complexity Low_complexity 1 21 0 2 704 315 71 0 0 chr5 15642723 15642765 -136894494 + (CCCCCT)n Simple_repeat Simple_repeat 2 43 0 2 704 483 261 27 53 chr5 15642796 15642946 -136894313 - B3 SINE B2 -68 148 3 2 704 311 44 22 0 chr5 15643018 15643063 -136894196 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 704 1014 307 99 59 chr5 15643234 15643918 -136893341 - Lx2B LINE L1 -1091 5909 5117 2 704 2285 65 6 10 chr5 15643918 15644231 -136893028 - L1Md_F2 LINE L1 0 6582 6271 2 704 1014 311 120 37 chr5 15644231 15644508 -136892751 - Lx2B LINE L1 -731 5116 4848 2 704 192 70 22 44 chr5 15645239 15645284 -136891975 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 704 4718 119 14 3 chr5 15645740 15646470 -136890789 + L1_Mm LINE L1 4542 5279 -604 2 704 234 0 0 0 chr5 15647631 15647657 -136889602 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 704 594 0 0 0 chr5 15647717 15647783 -136889476 + (GA)n Simple_repeat Simple_repeat 2 67 0 2 704 300 186 0 0 chr5 15648070 15648129 -136889130 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 704 237 65 0 0 chr5 15648376 15648407 -136888852 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 704 730 241 43 38 chr5 15648420 15648631 -136888628 - B3 SINE B2 0 216 5 2 704 936 334 158 6 chr5 15649407 15649883 -136887376 - Lx8 LINE L1 -2 7471 6924 2 704 842 162 6 19 chr5 15650078 15650235 -136887024 - Lx2B LINE L1 -585 6415 6261 2 704 3167 142 53 2 chr5 15650242 15650751 -136886508 + Lx2B LINE L1 6441 6975 -25 2 704 271 214 34 56 chr5 15650758 15650847 -136886412 - Lx8 LINE L1 -1132 6341 6255 2 704 259 243 194 45 chr5 15651329 15651484 -136885775 + RLTR40 LTR ERVK 578 755 -62 2 704 713 43 11 0 chr5 15652021 15652114 -136885145 + (TTCTC)n Simple_repeat Simple_repeat 5 98 0 2 704 423 335 100 28 chr5 15653246 15653322 -136883937 + MLT1A0 LTR MaLR 41 128 -237 2 704 937 197 108 113 chr5 15653322 15653694 -136883565 - ORR1D1 LTR MaLR 0 374 5 2 704 423 335 100 28 chr5 15653694 15653866 -136883393 + MLT1A0 LTR MaLR 129 306 -59 2 704 860 266 123 64 chr5 15653879 15654237 -136883022 - MTE2b LTR MaLR 0 379 1 2 704 297 75 0 0 chr5 15654733 15654773 -136882486 + (TAA)n Simple_repeat Simple_repeat 2 41 0 2 704 237 296 90 20 chr5 15655472 15655572 -136881687 - MIR SINE MIR -38 224 118 2 704 2329 168 54 43 chr5 15655595 15656150 -136881109 - RLTR31_Mm LTR ERVK 0 561 1 2 704 4265 194 72 36 chr5 15656151 15657233 -136880026 - RMER3D-int LTR ERVK -1 2841 1721 2 704 397 110 27 27 chr5 15657920 15657995 -136879264 + B1_Mm SINE Alu 72 146 -1 2 704 210 111 44 0 chr5 15657996 15658041 -136879218 + A-rich Low_complexity Low_complexity 3 49 0 2 704 241 395 0 0 chr5 15658340 15658474 -136878785 - MER5A DNA MER1_type -33 156 23 2 704 500 311 96 86 chr5 15658858 15659171 -136878088 + MER73 LTR ERVL 277 592 -52 2 704 933 126 182 10 chr5 15659171 15659363 -136877896 + URR1A DNA MER1_type 1 225 -1 2 704 431 320 0 23 chr5 15659691 15659822 -136877437 - ID_B1 SINE B4 -17 207 80 2 704 428 301 0 19 chr5 15660138 15660243 -136877016 - B3 SINE B2 -60 156 54 2 704 314 53 49 73 chr5 15662550 15662632 -136874627 + (TCTCTG)n Simple_repeat Simple_repeat 3 82 0 2 704 1696 234 95 0 chr5 15662632 15663055 -136874204 - Lx6 LINE L1 -566 6894 6432 2 704 234 0 0 0 chr5 15665560 15665586 -136871673 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 704 22 0 0 0 chr5 15666635 15666657 -136870602 + AT_rich Low_complexity Low_complexity 1 22 0 2 704 278 253 0 95 chr5 15666853 15666958 -136870301 - RMER30 DNA MER1_type -68 134 40 2 704 222 132 57 29 chr5 15667822 15667892 -136869367 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 704 3714 100 2 1 chr5 15673297 15673838 -136863421 - Lx2B LINE L1 -1081 5919 5375 2 704 6056 42 5 1 chr5 15673838 15674575 -136862684 + L1_Mus1 LINE L1 5828 6567 0 2 704 5571 166 25 28 chr5 15674803 15676111 -136861148 + L1Md_T LINE L1 99 1205 -5411 2 704 36238 32 1 0 chr5 15676117 15680530 -136856729 + L1Md_T LINE L1 1170 5585 -298 2 704 7948 57 0 1 chr5 15680531 15681528 -136855731 + L1Md_T LINE L1 5587 6582 0 2 704 404 385 33 33 chr5 15682147 15682421 -136854838 + B4A SINE B4 1 274 -18 2 704 26 0 0 0 chr5 15682882 15682908 -136854351 + AT_rich Low_complexity Low_complexity 1 26 0 2 704 220 392 37 0 chr5 15683038 15683145 -136854114 + MIRc SINE MIR 26 136 -132 2 704 441 145 0 0 chr5 15684586 15684662 -136852597 + (TCCC)n Simple_repeat Simple_repeat 4 79 0 2 704 483 277 0 0 chr5 15684677 15684796 -136852463 - PB1D9 SINE Alu -1 119 1 2 704 959 256 46 33 chr5 15685711 15686078 -136851181 - RLTR41 LTR ERV1 0 446 1 2 704 643 318 34 57 chr5 15686513 15686862 -136850397 - RMER5 LTR ERV1 -21 513 173 2 704 1488 184 212 5 chr5 15686862 15687229 -136850030 + RLTR41 LTR ERV1 1 443 -3 2 704 207 0 0 0 chr5 15687230 15687253 -136850006 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 704 1165 28 0 27 chr5 15687256 15687405 -136849854 - B1_Mus2 SINE Alu 0 147 3 2 704 340 229 119 44 chr5 15687447 15687607 -136849652 - RMER5 LTR ERV1 -358 176 5 2 704 227 409 0 0 chr5 15687831 15687902 -136849357 + RMER30 DNA MER1_type 131 201 -1 2 704 195 114 0 0 chr5 15687958 15687993 -136849266 + (T)n Simple_repeat Simple_repeat 1 35 0 2 704 336 48 0 0 chr5 15688109 15688151 -136849108 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 704 254 353 12 0 chr5 15688191 15688276 -136848983 - B4A SINE B4 -4 288 203 2 704 4949 76 4 16 chr5 15688307 15688990 -136848269 - L1_Mus3 LINE L1 -5 6633 5959 2 704 210 343 65 91 chr5 15689013 15689167 -136848092 - B4 SINE B4 -116 176 27 2 704 241 277 8 165 chr5 15690418 15690539 -136846720 - PB1D7 SINE Alu -9 111 10 2 704 22 0 0 0 chr5 15691214 15691236 -136846023 + AT_rich Low_complexity Low_complexity 1 22 0 2 704 453 280 45 62 chr5 15691420 15691599 -136845660 + B4A SINE B4 59 234 -58 2 704 2554 173 43 62 chr5 15691937 15692306 -136844953 + RLTR11A2 LTR ERVK 1 369 -158 2 704 3358 30 5 0 chr5 15692306 15692700 -136844559 + MTA_Mm LTR MaLR 1 396 0 2 704 2554 173 43 62 chr5 15692700 15692867 -136844392 + RLTR11A2 LTR ERVK 370 527 0 2 704 242 321 18 44 chr5 15693528 15693642 -136843617 + L4 LINE RTE 1741 1851 -178 2 704 366 47 62 0 chr5 15694470 15694534 -136842725 + (CATA)n Simple_repeat Simple_repeat 3 70 0 2 704 1517 253 62 28 chr5 15694822 15695293 -136841966 - RMER5 LTR ERV1 -8 526 40 2 704 357 276 0 0 chr5 15701015 15701113 -136836146 + MTE2b LTR MaLR 1 98 -281 2 704 807 312 16 12 chr5 15701116 15701369 -136835890 + MTE2b LTR MaLR 61 314 -65 2 704 1238 115 16 0 chr5 15701817 15701999 -136835260 + B2_Mm2 SINE B2 2 186 -9 2 704 421 316 135 0 chr5 15702150 15702394 -136834865 + B4A SINE B4 5 281 -11 2 704 2606 89 0 6 chr5 15702634 15702994 -136834265 + L1Md_F2 LINE L1 5201 5558 -325 2 704 7255 68 29 4 chr5 15703006 15703966 -136833293 + L1Md_F2 LINE L1 5587 6570 -12 2 704 3533 84 32 87 chr5 15703986 15704586 -136832673 + L1_Mus2 LINE L1 6000 6566 0 2 704 242 357 10 10 chr5 15704674 15704773 -136832486 - PB1D10 SINE Alu 0 117 19 2 704 201 203 54 48 chr5 15705011 15705177 -136832082 + (TATAA)n Simple_repeat Simple_repeat 5 171 0 2 704 216 241 44 15 chr5 15705097 15705232 -136832027 + (TA)n Simple_repeat Simple_repeat 1 139 0 2 704 371 321 76 23 chr5 15705718 15705890 -136831369 + B3A SINE B2 2 182 -16 2 704 202 111 74 0 chr5 15706452 15706506 -136830753 + (TCTG)n Simple_repeat Simple_repeat 4 61 0 2 704 275 294 6 24 chr5 15706524 15706625 -136830634 + CT-rich Low_complexity Low_complexity 1 99 0 2 704 22 0 0 0 chr5 15707737 15707759 -136829500 + AT_rich Low_complexity Low_complexity 1 22 0 2 704 247 298 35 35 chr5 15709141 15709228 -136828031 + MER102c DNA MER1_type 200 286 -45 2 704 1396 94 5 5 chr5 15709667 15709860 -136827399 - B2_Mm2 SINE B2 0 195 3 2 704 804 195 0 0 chr5 15710471 15710640 -136826619 + (CA)n Simple_repeat Simple_repeat 2 170 0 2 704 276 185 0 0 chr5 15710640 15710694 -136826565 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 2 704 312 305 94 26 chr5 15712818 15713010 -136824249 - L1MA6 LINE L1 -248 6052 5848 2 704 28 29 0 0 chr5 15713010 15713045 -136824214 + AT_rich Low_complexity Low_complexity 1 35 0 2 704 455 289 29 15 chr5 15713051 15713188 -136824071 + RSINE1 SINE B4 5 143 -22 2 704 414 0 0 0 chr5 15713188 15713234 -136824025 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 704 531 69 0 0 chr5 15713234 15713305 -136823954 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 704 581 162 72 0 chr5 15713374 15713485 -136823774 + B1_Mus2 SINE Alu 9 127 -20 2 704 888 82 0 0 chr5 15713485 15713607 -136823652 + (TTCTC)n Simple_repeat Simple_repeat 5 126 0 2 704 265 148 0 47 chr5 15713614 15713678 -136823581 + CT-rich Low_complexity Low_complexity 3 63 0 2 704 306 196 27 75 chr5 15713683 15713871 -136823388 - RMER17C LTR ERVK -136 274 96 2 704 4403 105 8 2 chr5 15714341 15714979 -136822280 - Lx3A LINE L1 -17 6964 6323 2 704 890 81 29 7 chr5 15714979 15715116 -136822143 + L1_Mur1 LINE L1 4360 4499 -1387 2 704 567 112 0 0 chr5 15715172 15715270 -136821989 + (CA)n Simple_repeat Simple_repeat 1 98 0 2 704 264 161 0 0 chr5 15715270 15715332 -136821927 + GA-rich Low_complexity Low_complexity 1 62 0 2 704 1305 96 0 0 chr5 15715812 15715830 -136821429 - B2_Mm1a SINE B2 -14 179 162 2 704 414 0 0 0 chr5 15715830 15715876 -136821383 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2 704 1305 96 0 0 chr5 15715876 15716035 -136821224 - B2_Mm1a SINE B2 -32 161 3 2 704 999 66 73 0 chr5 15716465 15716602 -136820657 - B1_Mm SINE Alu 0 147 1 2 704 22 35 0 0 chr5 15717026 15717055 -136820204 + AT_rich Low_complexity Low_complexity 1 29 0 2 704 611 144 0 9 chr5 15718878 15718990 -136818269 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 704 248 355 0 25 chr5 15719033 15719114 -136818145 + ID4 SINE ID 1 79 -4 3 704 1036 231 5 14 chr5 15720716 15720931 -136816328 + B3 SINE B2 1 213 -3 3 704 348 127 0 0 chr5 15720937 15720992 -136816267 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 704 339 65 0 0 chr5 15721607 15721653 -136815606 + (CAGAG)n Simple_repeat Simple_repeat 2 47 0 3 704 786 50 0 0 chr5 15721653 15721751 -136815508 + (GGAAA)n Simple_repeat Simple_repeat 3 101 0 3 704 404 304 73 15 chr5 15721960 15722097 -136815162 - B3A SINE B2 -2 196 52 3 704 725 290 82 21 chr5 15722135 15722378 -136814881 - B4 SINE B4 -6 286 29 3 704 450 0 0 0 chr5 15722378 15722428 -136814831 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 704 483 325 55 73 chr5 15722430 15722705 -136814554 - B4A SINE B4 -20 272 3 3 704 244 197 197 0 chr5 15723695 15723756 -136813503 - ID4_ SINE ID -4 79 7 3 704 752 280 10 20 chr5 15723913 15724117 -136813142 - B3 SINE B2 -14 202 1 3 704 432 231 79 21 chr5 15724143 15724267 -136812992 + B1_Mus1 SINE Alu 6 136 -13 3 704 264 360 10 29 chr5 15725219 15725322 -136811937 + PB1 SINE Alu 24 124 -3 3 704 498 33 0 0 chr5 15725336 15725396 -136811863 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 3 704 3737 124 2 12 chr5 15726446 15727025 -136810234 + Lx LINE L1 6079 6651 -3 3 704 22 0 0 0 chr5 15727430 15727452 -136809807 + AT_rich Low_complexity Low_complexity 1 22 0 3 705 382 294 24 36 chr5 15728772 15728938 -136808321 + MLT1B LTR MaLR 227 390 0 3 705 651 24 0 0 chr5 15728976 15729060 -136808199 - L1Md_T LINE L1 -1 6581 6498 3 705 213 39 0 0 chr5 15729336 15729362 -136807897 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3 705 251 328 42 33 chr5 15729380 15729500 -136807759 - PB1 SINE Alu 0 127 7 3 705 623 278 19 31 chr5 15730002 15730162 -136807097 - B3 SINE B2 0 216 59 3 705 202 118 29 0 chr5 15730837 15730871 -136806388 + (TTG)n Simple_repeat Simple_repeat 1 35 0 3 705 277 233 25 33 chr5 15732473 15732593 -136804666 + (TA)n Simple_repeat Simple_repeat 1 119 0 3 705 371 131 83 0 chr5 15732610 15732694 -136804565 + Lx9 LINE L1 7554 7644 0 3 705 239 149 54 0 chr5 15733101 15733175 -136804084 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 3 705 25 0 0 0 chr5 15733227 15733252 -136804007 + AT_rich Low_complexity Low_complexity 1 25 0 3 705 241 259 35 0 chr5 15733497 15733555 -136803704 + PB1D7 SINE Alu 1 60 -60 3 705 4547 162 12 21 chr5 15734928 15735745 -136801514 - Lx2B LINE L1 -4 6996 6187 3 705 25 31 0 0 chr5 15735791 15735823 -136801436 + AT_rich Low_complexity Low_complexity 1 32 0 3 705 23 33 0 0 chr5 15736090 15736120 -136801139 + AT_rich Low_complexity Low_complexity 1 30 0 3 705 378 0 0 0 chr5 15738580 15738622 -136798637 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 3 705 333 224 50 10 chr5 15739032 15739131 -136798128 - L1MA4 LINE L1 -80 6220 6118 3 705 314 263 44 0 chr5 15739200 15739314 -136797945 + L1MA9 LINE L1 5785 5903 -409 3 705 393 70 0 0 chr5 15742152 15742209 -136795050 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 705 263 259 74 0 chr5 15744839 15744920 -136792339 - MER20 DNA MER1_type 0 219 133 3 705 21 0 0 0 chr5 15745523 15745544 -136791715 + AT_rich Low_complexity Low_complexity 1 21 0 3 705 340 319 38 5 chr5 15745622 15745808 -136791451 + L1MA9 LINE L1 6056 6247 -65 3 705 204 125 0 0 chr5 15745813 15745845 -136791414 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 705 269 343 153 0 chr5 15746759 15746896 -136790363 + B3A SINE B2 4 161 -37 3 705 372 22 0 0 chr5 15749609 15749654 -136787605 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 705 956 150 60 26 chr5 15749885 15750118 -136787141 - Lx7 LINE L1 0 7696 7456 3 705 323 262 29 19 chr5 15750223 15750328 -136786931 + L1M4 LINE L1 2914 3019 -3127 3 705 390 404 7 0 chr5 15750600 15750736 -136786523 - ID_B1 SINE B4 -59 165 29 3 705 233 318 56 70 chr5 15751326 15751468 -136785791 + MER20 DNA MER1_type 14 153 -66 3 705 450 0 0 0 chr5 15751933 15751983 -136785276 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 705 265 298 49 73 chr5 15752051 15752268 -136784991 + RLTR25A LTR ERVK 813 1103 0 3 705 21 0 0 0 chr5 15752448 15752469 -136784790 + AT_rich Low_complexity Low_complexity 1 21 0 3 705 488 43 29 0 chr5 15752971 15753041 -136784218 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 3 705 426 76 25 0 chr5 15753424 15753503 -136783756 + Lx3_Mus LINE L1 6921 7001 -8 3 705 25 0 0 0 chr5 15753699 15753724 -136783535 + AT_rich Low_complexity Low_complexity 1 25 0 3 705 24 53 0 0 chr5 15754773 15754811 -136782448 + AT_rich Low_complexity Low_complexity 1 38 0 3 705 6379 92 7 10 chr5 15754837 15755752 -136781507 - L1_Mus3 LINE L1 -5 6633 5722 3 705 948 144 46 36 chr5 15755828 15756022 -136781237 - Lx LINE L1 -7 6647 6452 3 705 5990 46 1 0 chr5 15756429 15757163 -136780096 + L1Md_T LINE L1 5848 6582 0 3 705 389 331 0 83 chr5 15757245 15757426 -136779833 - B4A SINE B4 -6 286 121 3 705 509 161 8 0 chr5 15758067 15758197 -136779062 + (TCTA)n Simple_repeat Simple_repeat 2 132 0 3 705 293 355 12 61 chr5 15760738 15760903 -136776356 + RSINE1 SINE B4 3 159 -6 3 705 475 259 107 0 chr5 15762362 15762474 -136774785 - B1_Mur1 SINE Alu -5 144 21 3 705 492 89 0 0 chr5 15762586 15762665 -136774594 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 705 2761 86 3 0 chr5 15762927 15763299 -136773960 - Lx3_Mus LINE L1 0 7009 6637 3 705 1019 81 0 0 chr5 15763299 15763435 -136773824 + Lx3_Mus LINE L1 6487 6622 -387 3 705 197 232 14 0 chr5 15763671 15763740 -136773519 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 3 705 312 225 83 178 chr5 15763751 15763908 -136773351 - B1F2 SINE Alu -3 146 5 3 705 205 186 0 0 chr5 15764546 15764589 -136772670 + A-rich Low_complexity Low_complexity 1 43 0 3 705 2283 39 3 0 chr5 15764728 15765010 -136772249 + L1Md_F2 LINE L1 6299 6581 -1 3 705 360 319 63 28 chr5 15766417 15766559 -136770700 + B4A SINE B4 5 151 -141 3 705 251 382 39 0 chr5 15767070 15767172 -136770087 - LTR41 LTR ERVL -226 542 437 3 705 28 29 0 0 chr5 15767205 15767240 -136770019 + AT_rich Low_complexity Low_complexity 1 35 0 3 705 359 351 101 42 chr5 15767369 15767607 -136769652 - LTR41 LTR ERVL -502 266 15 3 705 31 44 0 0 chr5 15767625 15767670 -136769589 + AT_rich Low_complexity Low_complexity 1 45 0 3 705 261 0 0 0 chr5 15768471 15768501 -136768758 - U6 snRNA snRNA -77 30 1 3 705 1149 324 75 21 chr5 15768655 15769134 -136768125 - Lx8 LINE L1 -151 7322 6818 3 705 21 57 0 0 chr5 15769274 15769309 -136767950 + AT_rich Low_complexity Low_complexity 1 35 0 3 705 546 263 83 0 chr5 15769367 15769500 -136767759 - B1_Mur1 SINE Alu -3 146 3 3 705 449 331 7 72 chr5 15769871 15770024 -136767235 - RSINE1 SINE B4 -20 145 3 3 705 1109 79 0 0 chr5 15772002 15772142 -136765117 + B1_Mus2 SINE Alu 2 141 -6 3 705 216 0 0 0 chr5 15772144 15772168 -136765091 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 3 705 818 324 21 42 chr5 15772701 15772985 -136764274 + B4A SINE B4 14 291 -1 3 705 22 0 0 0 chr5 15774399 15774421 -136762838 + AT_rich Low_complexity Low_complexity 1 22 0 3 705 333 0 0 0 chr5 15774832 15774869 -136762390 + (TAA)n Simple_repeat Simple_repeat 3 39 0 3 705 622 283 171 67 chr5 15774944 15775500 -136761759 - RLTR18 LTR ERVK 0 616 3 3 705 371 374 72 0 chr5 15777876 15778042 -136759217 - LTR16C LTR ERVL -13 476 299 3 705 4149 57 0 22 chr5 15778570 15779111 -136758148 - L1Md_F2 LINE L1 0 6582 6054 3 705 2294 96 12 3 chr5 15779344 15779668 -136757591 + ORR1A2 LTR MaLR 1 327 0 3 705 348 340 0 76 chr5 15780107 15780212 -136757047 + PB1D7 SINE Alu 15 111 -9 3 705 222 171 0 0 chr5 15780387 15780428 -136756831 + (TGGG)n Simple_repeat Simple_repeat 2 42 0 3 705 2834 94 12 19 chr5 15780560 15780970 -136756289 + MTB_Mm LTR MaLR 1 407 0 3 705 517 353 35 55 chr5 15781202 15781403 -136755856 - B4 SINE B4 -4 288 92 3 705 279 0 0 0 chr5 15782115 15782146 -136755113 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 705 495 82 0 0 chr5 15782146 15782218 -136755041 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 705 338 241 19 15 chr5 15782233 15782507 -136754752 + (TG)n Simple_repeat Simple_repeat 1 275 0 3 705 590 276 102 66 chr5 15783411 15783578 -136753681 + B3A SINE B2 4 176 -19 3 705 3137 171 59 32 chr5 15783885 15784542 -136752717 - RMER6C LTR ERVK 0 690 16 3 705 493 295 55 45 chr5 15785170 15785390 -136751869 + LTR40b LTR ERVL 229 450 -12 3 705 559 291 133 67 chr5 15786227 15786558 -136750701 - ORR1E LTR MaLR -4 355 3 3 705 327 256 139 41 chr5 15788130 15788252 -136749007 + RSINE1 SINE B4 10 143 -22 3 705 321 188 0 0 chr5 15788261 15788346 -136748913 + CT-rich Low_complexity Low_complexity 2 86 0 3 705 24 0 0 0 chr5 15789641 15789665 -136747594 + AT_rich Low_complexity Low_complexity 1 24 0 3 705 590 58 11 0 chr5 15789848 15789935 -136747324 + (TC)n Simple_repeat Simple_repeat 2 89 0 3 705 1117 76 0 0 chr5 15789937 15790082 -136747177 - B1_Mus1 SINE Alu -3 145 1 3 705 21 36 0 0 chr5 15790421 15790449 -136746810 + AT_rich Low_complexity Low_complexity 1 28 0 3 705 195 100 0 0 chr5 15790633 15790663 -136746596 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 705 2746 15 95 6 chr5 15790729 15791066 -136746193 - IAPLTR1_Mm LTR ERVK 0 367 1 3 705 51492 32 15 3 chr5 15791066 15797462 -136739797 - IAPEz-int LTR ERVK 0 6481 8 3 705 2746 15 95 6 chr5 15797462 15797799 -136739460 - IAPLTR1_Mm LTR ERVK 0 367 1 3 705 225 0 0 0 chr5 15799127 15799152 -136738107 + (T)n Simple_repeat Simple_repeat 1 25 0 4 705 22 0 0 0 chr5 15799406 15799428 -136737831 + AT_rich Low_complexity Low_complexity 1 22 0 4 705 450 0 0 0 chr5 15799983 15800033 -136737226 + (TAAAA)n Simple_repeat Simple_repeat 3 52 0 4 705 1324 150 62 4 chr5 15800951 15801192 -136736067 + Lx5 LINE L1 6654 6908 -142 4 705 224 122 0 39 chr5 15801437 15801488 -136735771 + (CATA)n Simple_repeat Simple_repeat 2 50 0 4 705 958 45 0 15 chr5 15802918 15803052 -136734207 + (TTCC)n Simple_repeat Simple_repeat 1 132 0 4 705 208 315 123 68 chr5 15803609 15803861 -136733398 + L2a LINE L2 2910 3175 -251 4 705 905 185 106 55 chr5 15804021 15804313 -136732946 - Lx7 LINE L1 -2 7694 7388 4 705 266 0 0 29 chr5 15804313 15804348 -136732911 + (TAA)n Simple_repeat Simple_repeat 2 35 0 4 705 1600 218 83 7 chr5 15804353 15804787 -136732472 - Lx7 LINE L1 -344 7352 6886 4 705 270 0 0 0 chr5 15806355 15806385 -136730874 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 705 224 273 41 8 chr5 15806433 15806555 -136730704 + (TG)n Simple_repeat Simple_repeat 2 127 0 4 705 333 271 111 22 chr5 15806967 15807148 -136730111 + MER33 DNA MER1_type 127 323 -1 4 705 192 375 0 30 chr5 15807847 15807946 -136729313 - L2a LINE L2 -251 3175 3080 4 705 291 323 100 45 chr5 15809445 15809756 -136727503 + L1MB1 LINE L1 5762 6089 -79 4 705 438 241 60 0 chr5 15809812 15809928 -136727331 + Lx9 LINE L1 7080 7202 -442 4 705 1140 55 14 0 chr5 15809928 15810074 -136727185 + B1_Mus1 SINE Alu 1 148 0 4 705 205 182 0 0 chr5 15810075 15810119 -136727140 + A-rich Low_complexity Low_complexity 1 44 0 4 705 357 169 0 0 chr5 15810119 15810178 -136727081 + Lx9 LINE L1 7187 7245 -399 4 705 364 254 12 1 chr5 15813991 15814071 -136723188 - ID4_ SINE ID -63 89 10 4 705 579 161 80 61 chr5 15815321 15815533 -136721726 + Lx9 LINE L1 7423 7638 -6 4 705 234 365 0 76 chr5 15817030 15817122 -136720137 + PB1D10 SINE Alu 32 116 -1 4 705 669 331 42 45 chr5 15817367 15817490 -136719769 + B4A SINE B4 2 124 -168 4 705 1005 74 0 0 chr5 15817490 15817625 -136719634 + (GGA)n Simple_repeat Simple_repeat 1 135 0 4 705 669 331 42 45 chr5 15817625 15817789 -136719470 + B4A SINE B4 125 288 -4 4 705 31 58 0 0 chr5 15819054 15819106 -136718153 + AT_rich Low_complexity Low_complexity 1 52 0 4 705 1166 62 0 20 chr5 15819158 15819307 -136717952 + B1_Mm SINE Alu 2 147 0 4 705 1018 156 43 11 chr5 15824290 15824319 -136712940 - B2_Mm2 SINE B2 0 195 162 4 705 468 0 0 0 chr5 15824319 15824371 -136712888 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 4 705 1018 156 43 11 chr5 15824371 15824529 -136712730 - B2_Mm2 SINE B2 -34 161 2 4 705 315 0 0 0 chr5 15824950 15824985 -136712274 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 705 2244 169 137 24 chr5 15825227 15825724 -136711535 - RLTR20B3 LTR ERVK -4 573 21 4 705 5030 28 8 12 chr5 15826922 15827528 -136709731 + L1Md_F2 LINE L1 5979 6582 0 4 705 464 272 89 80 chr5 15827633 15827908 -136709351 - MLT1A0 LTR MaLR -24 350 74 4 705 849 257 24 0 chr5 15828859 15829069 -136708190 + B3 SINE B2 1 215 -1 4 705 410 36 18 0 chr5 15829079 15829135 -136708124 + (TAA)n Simple_repeat Simple_repeat 1 57 0 4 705 213 350 98 24 chr5 15829447 15829570 -136707689 + MIR3 SINE MIR 25 156 -52 4 705 238 205 37 49 chr5 15830497 15830579 -136706680 + T-rich Low_complexity Low_complexity 6 86 0 4 705 237 287 22 22 chr5 15830824 15830844 -136706415 + B4A SINE B4 4 66 -226 4 705 268 267 0 48 chr5 15830844 15830907 -136706352 + ID4_ SINE ID 23 82 -1 4 705 22 0 0 0 chr5 15831276 15831298 -136705961 + AT_rich Low_complexity Low_complexity 1 22 0 4 705 995 123 0 0 chr5 15831589 15831735 -136705524 + B1_Mm SINE Alu 2 147 0 4 705 615 117 0 0 chr5 15831746 15831840 -136705419 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 4 705 446 0 19 0 chr5 15831840 15831894 -136705365 + (GAAAA)n Simple_repeat Simple_repeat 1 55 0 4 705 478 326 14 85 chr5 15834038 15834249 -136703010 + B3A SINE B2 6 201 -15 4 705 198 143 0 0 chr5 15834265 15834300 -136702959 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 705 1083 197 46 85 chr5 15835365 15835693 -136701566 - Lx7 LINE L1 0 7696 7382 4 705 256 111 37 0 chr5 15835715 15835769 -136701490 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 705 324 141 89 35 chr5 15835783 15835952 -136701307 + (TA)n Simple_repeat Simple_repeat 1 178 0 4 705 27 29 0 0 chr5 15835998 15836032 -136701227 + AT_rich Low_complexity Low_complexity 1 34 0 4 705 5794 213 98 24 chr5 15836046 15837722 -136699537 - Lx7 LINE L1 -354 7342 5514 4 705 1972 172 43 8 chr5 15837746 15838138 -136699121 + L1_Mur3 LINE L1 5107 5512 -368 4 705 1016 104 19 0 chr5 15838544 15838698 -136698561 - L1_Mus1 LINE L1 0 6567 6411 4 705 2218 80 7 0 chr5 15838698 15838997 -136698262 + L1_Mm LINE L1 5252 5552 -331 4 705 738 189 7 7 chr5 15840191 15840335 -136696924 - B1_Mus2 SINE Alu -3 144 1 4 705 374 296 86 23 chr5 15840596 15840817 -136696442 - MER5C DNA MER1_type -78 235 1 4 705 225 385 44 0 chr5 15841632 15841723 -136695536 + L2b LINE L2 3261 3355 -20 4 705 642 57 160 0 chr5 15842304 15842410 -136694849 - L1_Mus4 LINE L1 -4 6632 6510 4 705 1434 340 64 9 chr5 15842743 15843429 -136693830 - Lx8 LINE L1 -169 7304 6581 4 705 1928 145 12 3 chr5 15843638 15843957 -136693302 - Lx2A1 LINE L1 -4 7004 6683 4 705 23 33 0 0 chr5 15844243 15844273 -136692986 + AT_rich Low_complexity Low_complexity 1 30 0 4 705 186 43 0 0 chr5 15846989 15847012 -136690247 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4 705 458 234 0 14 chr5 15848938 15849077 -136688182 + (CATA)n Simple_repeat Simple_repeat 1 137 0 4 705 414 0 0 0 chr5 15850043 15850089 -136687170 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 705 479 367 45 20 chr5 15850132 15850332 -136686927 - B4A SINE B4 -4 288 84 4 705 994 314 62 30 chr5 15851592 15851963 -136685296 - MTD LTR MaLR -18 401 19 4 705 33 43 0 0 chr5 15852067 15852114 -136685145 + AT_rich Low_complexity Low_complexity 1 47 0 4 705 789 110 0 0 chr5 15852334 15852452 -136684807 + (TA)n Simple_repeat Simple_repeat 2 119 0 4 705 1063 103 0 14 chr5 15852914 15853062 -136684197 + B1_Mus2 SINE Alu 2 147 0 4 705 198 0 0 0 chr5 15853091 15853113 -136684146 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 705 225 258 48 58 chr5 15853597 15853700 -136683559 - B1F SINE Alu -6 143 42 4 705 1771 262 20 5 chr5 15853798 15854197 -136683062 - MTD LTR MaLR -14 405 1 4 705 1059 280 187 38 chr5 15854197 15854672 -136682587 - MTD-int LTR MaLR 0 1258 713 4 705 271 158 158 0 chr5 15854669 15854726 -136682533 + B1_Mur1 SINE Alu 75 140 -9 4 705 25 0 0 0 chr5 15855814 15855839 -136681420 + AT_rich Low_complexity Low_complexity 1 25 0 4 705 3613 97 39 4 chr5 15856202 15856738 -136680521 - Lx2 LINE L1 0 6997 6443 4 705 350 175 0 12 chr5 15857340 15857421 -136679838 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 705 1035 25 0 0 chr5 15857595 15857717 -136679542 + (TTTCC)n Simple_repeat Simple_repeat 5 126 0 4 705 502 293 98 24 chr5 15857873 15858170 -136679089 - Lx9 LINE L1 -142 7502 7184 4 706 21 36 0 0 chr5 15859828 15859856 -136677403 + AT_rich Low_complexity Low_complexity 1 28 0 4 706 333 0 0 0 chr5 15859909 15859946 -136677313 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 706 248 314 41 41 chr5 15860907 15861030 -136676229 - MIRb SINE MIR -76 192 70 4 706 732 206 185 0 chr5 15862246 15862435 -136674824 - URR1B DNA MER1_type 0 225 2 4 706 330 115 0 0 chr5 15863053 15863105 -136674154 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 4 706 486 0 0 0 chr5 15864681 15864735 -136672524 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 706 943 133 7 0 chr5 15865153 15865296 -136671963 - B1_Mus1 SINE Alu -2 146 3 4 706 2967 50 0 0 chr5 15865518 15865879 -136671380 - L1_Mus1 LINE L1 -2 6565 6205 4 706 630 362 48 3 chr5 15865995 15866308 -136670951 - Lx8 LINE L1 -147 7326 7000 4 706 832 118 89 0 chr5 15866317 15866452 -136670807 - B1_Mus1 SINE Alu 0 148 2 4 706 22 35 0 0 chr5 15869390 15869419 -136667840 + AT_rich Low_complexity Low_complexity 1 29 0 4 706 6921 112 23 12 chr5 15869556 15870611 -136666648 - Lx LINE L1 0 6654 5589 4 706 432 37 0 0 chr5 15870995 15871049 -136666210 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 706 866 230 40 5 chr5 15872161 15872362 -136664897 - B3 SINE B2 -6 210 3 4 706 491 0 17 0 chr5 15872728 15872787 -136664472 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 706 234 0 0 0 chr5 15872787 15872812 -136664447 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 706 911 240 40 5 chr5 15872817 15873018 -136664241 - B3 SINE B2 -6 210 3 4 706 792 144 23 11 chr5 15873043 15873218 -136664041 + (TA)n Simple_repeat Simple_repeat 1 177 0 4 706 2301 192 24 56 chr5 15873233 15873768 -136663491 - Lx7 LINE L1 -28 7668 7151 4 706 483 184 23 0 chr5 15873768 15873855 -136663404 - RLTR20D LTR ERVK 0 568 480 4 706 390 42 0 0 chr5 15873855 15873903 -136663356 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 706 185 197 42 83 chr5 15874368 15874440 -136662819 - L2 LINE L2 -819 2600 2532 4 706 507 139 0 0 chr5 15874664 15874779 -136662480 + (A)n Simple_repeat Simple_repeat 1 115 0 4 706 937 132 224 0 chr5 15874779 15874953 -136662306 + B3 SINE B2 3 215 -1 4 706 596 221 50 0 chr5 15875500 15875640 -136661619 - B1_Mus1 SINE Alu -1 147 1 4 706 195 42 0 0 chr5 15880121 15880145 -136657114 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 706 22 0 0 0 chr5 15880230 15880252 -136657007 + AT_rich Low_complexity Low_complexity 1 22 0 4 706 22 0 0 0 chr5 15881912 15881934 -136655325 + AT_rich Low_complexity Low_complexity 1 22 0 4 706 1348 313 90 38 chr5 15882016 15882704 -136654555 - Lx8 LINE L1 -525 6948 6225 4 706 1442 3 18 19 chr5 15882725 15884034 -136653225 + (TAGA)n Simple_repeat Simple_repeat 1 1308 0 5 706 1332 268 51 13 chr5 15884136 15884428 -136652831 + Lx8 LINE L1 7038 7332 -141 5 706 603 40 0 0 chr5 15884428 15884502 -136652757 + (GA)n Simple_repeat Simple_repeat 1 74 0 5 706 1332 268 51 13 chr5 15884502 15884599 -136652660 + Lx8 LINE L1 7333 7442 -31 5 706 294 402 5 21 chr5 15885313 15885501 -136651758 + MIRb SINE MIR 65 249 -19 5 706 2178 202 52 7 chr5 15885703 15886111 -136651148 - Lx5 LINE L1 -3 7047 6622 5 706 576 0 0 0 chr5 15886112 15886176 -136651083 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 706 581 174 0 0 chr5 15887732 15887824 -136649435 - B1_Mm SINE Alu -6 141 50 5 706 312 27 0 0 chr5 15887842 15887879 -136649380 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 5 706 225 300 0 0 chr5 15889741 15889801 -136647458 + CT-rich Low_complexity Low_complexity 1 60 0 5 706 324 216 27 0 chr5 15890115 15890189 -136647070 + L1M3 LINE L1 3638 3713 -2427 5 706 1348 281 100 11 chr5 15890186 15890769 -136646490 + Lx9 LINE L1 6880 7644 0 5 706 3055 57 31 0 chr5 15890791 15891179 -136646080 - MTB LTR MaLR 0 400 1 5 706 7771 130 36 80 chr5 15891179 15892481 -136644778 - MTB-int LTR MaLR -425 1538 328 5 706 4112 106 153 16 chr5 15892481 15893192 -136644067 - RMER17D2 LTR ERVK 0 809 1 5 706 7771 148 57 18 chr5 15893192 15893647 -136643612 - MTB-int LTR MaLR -1497 466 3 5 706 3030 58 7 60 chr5 15893647 15894067 -136643192 - MTB LTR MaLR 0 400 3 5 706 441 340 194 11 chr5 15894067 15894337 -136642922 - MTE2b LTR MaLR -59 320 1 5 706 211 320 12 25 chr5 15894570 15894650 -136642609 + RSINE1 SINE B4 87 165 0 5 706 27 0 0 0 chr5 15895131 15895158 -136642101 + AT_rich Low_complexity Low_complexity 1 27 0 5 706 1487 36 5 30 chr5 15895258 15895459 -136641800 + L1Md_F2 LINE L1 6372 6567 -15 5 706 668 0 32 11 chr5 15895474 15895567 -136641692 + (GAA)n Simple_repeat Simple_repeat 2 96 0 5 706 211 28 0 53 chr5 15895631 15895669 -136641590 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 706 1218 47 0 20 chr5 15896279 15896430 -136640829 + B1_Mus1 SINE Alu 1 148 0 5 706 368 253 0 12 chr5 15896678 15896762 -136640497 - B1_Mur1 SINE Alu -8 141 59 5 706 1209 61 0 0 chr5 15897109 15897256 -136640003 + B1_Mus2 SINE Alu 1 147 0 5 706 447 73 0 0 chr5 15897256 15897324 -136639935 + (A)n Simple_repeat Simple_repeat 1 68 0 5 706 1482 212 75 19 chr5 15897353 15897713 -136639546 + ORR1C2 LTR MaLR 5 384 0 5 706 3954 242 126 23 chr5 15897717 15898956 -136638303 + ORR1C2-int LTR MaLR 5 1370 0 5 706 1444 209 129 6 chr5 15898956 15899125 -136638134 + ORR1C2 LTR MaLR 1 189 -195 5 706 441 0 0 0 chr5 15899125 15899174 -136638085 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 706 1444 209 129 6 chr5 15899174 15899346 -136637913 + ORR1C2 LTR MaLR 190 383 -1 5 706 189 342 13 0 chr5 15899573 15899649 -136637610 + MIRc SINE MIR 3 79 -189 5 706 1091 150 16 0 chr5 15900519 15900706 -136636553 + B2_Mm1t SINE B2 2 191 -2 5 706 501 335 78 43 chr5 15901152 15901622 -136635637 + Lx9 LINE L1 6837 7372 -272 5 706 590 75 11 0 chr5 15901622 15901715 -136635544 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 706 364 356 112 29 chr5 15901715 15901835 -136635424 + Lx9 LINE L1 7345 7465 -8 5 706 22 35 0 0 chr5 15903277 15903306 -136633953 + AT_rich Low_complexity Low_complexity 1 29 0 5 706 24 0 0 0 chr5 15904295 15904319 -136632940 + AT_rich Low_complexity Low_complexity 1 24 0 5 706 605 248 32 0 chr5 15904527 15904652 -136632607 - B3A SINE B2 -69 129 1 5 706 841 75 0 0 chr5 15904869 15904989 -136632270 - L1_Mus1 LINE L1 0 6567 6448 5 706 24 0 0 0 chr5 15905082 15905106 -136632153 + AT_rich Low_complexity Low_complexity 1 24 0 5 706 2192 85 27 39 chr5 15905968 15906299 -136630960 + IAPLTR2b LTR ERVK 1 327 0 5 706 578 317 47 87 chr5 15906301 15906802 -136630457 - RLTR23 LTR ERV1 -3 427 8 5 706 711 333 132 42 chr5 15906824 15907535 -136629724 + L1MC LINE L1 3534 4308 -1838 5 706 681 215 28 52 chr5 15907549 15907638 -136629621 + RMER17C LTR ERVK 1 90 -320 5 706 216 0 0 0 chr5 15907638 15907662 -136629597 + (TC)n Simple_repeat Simple_repeat 2 25 0 5 706 681 215 28 52 chr5 15907662 15907822 -136629437 + RMER17C LTR ERVK 91 244 -166 5 706 948 238 38 9 chr5 15907793 15908111 -136629148 + RMER17C LTR ERVK 84 410 0 5 706 840 167 14 0 chr5 15908111 15908247 -136629012 + B1_Mus1 SINE Alu 10 147 -1 5 706 397 294 77 77 chr5 15908111 15908266 -136628993 + B4 SINE B4 94 248 -44 5 706 271 296 119 30 chr5 15908579 15908907 -136628352 + L1MA7 LINE L1 4943 5299 -841 5 706 1218 196 40 93 chr5 15908936 15909364 -136627895 - RMER17C LTR ERVK -5 405 1 5 706 227 287 41 8 chr5 15909494 15909617 -136627642 + L1MA7 LINE L1 5494 5620 -680 5 706 214 82 61 0 chr5 15909750 15909799 -136627460 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 5 706 312 271 26 25 chr5 15909806 15909965 -136627294 + L1MA7 LINE L1 5718 5869 -320 5 706 570 287 7 22 chr5 15909971 15910110 -136627149 + B1_Mur3 SINE Alu 12 148 -1 5 706 869 114 14 0 chr5 15910113 15910253 -136627006 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 5 706 975 128 99 26 chr5 15911009 15911201 -136626058 + RMER17C LTR ERVK 205 410 0 5 706 300 187 40 13 chr5 15911206 15911282 -136625977 + L1M1 LINE L1 5786 5863 -437 5 706 1770 175 22 50 chr5 15911443 15911890 -136625369 - RMER17C LTR ERVK -520 438 19 5 706 331 250 38 0 chr5 15911858 15911938 -136625321 + RSINE1 SINE B4 16 98 -67 5 706 5380 210 52 11 chr5 15912362 15914171 -136623088 + Lx5 LINE L1 5157 7050 0 5 706 618 277 50 20 chr5 15914279 15914478 -136622781 - ID_B1 SINE B4 -16 208 4 5 706 677 312 52 26 chr5 15914618 15914924 -136622335 - Charlie24 DNA MER1_type -359 2091 1778 5 706 460 263 62 10 chr5 15914980 15915076 -136622183 + RSINE1 SINE B4 49 149 -16 5 706 1910 55 0 0 chr5 15915099 15915335 -136621924 + L1_Mus1 LINE L1 6318 6553 -14 5 706 34 55 0 0 chr5 15915335 15915390 -136621869 + AT_rich Low_complexity Low_complexity 1 55 0 5 706 213 94 0 0 chr5 15915466 15915498 -136621761 + (TAA)n Simple_repeat Simple_repeat 2 33 0 5 706 27 49 0 0 chr5 15916978 15917019 -136620240 + AT_rich Low_complexity Low_complexity 1 41 0 5 706 203 267 67 0 chr5 15917181 15917241 -136620018 + MIRb SINE MIR 113 176 -92 5 706 180 0 0 0 chr5 15917363 15917383 -136619876 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 5 706 622 182 98 0 chr5 15918304 15918436 -136618823 - B1_Mus1 SINE Alu 0 148 4 5 706 382 319 48 8 chr5 15918738 15918884 -136618375 + MTEa LTR MaLR 218 377 -2 5 706 324 0 0 0 chr5 15919311 15919347 -136617912 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 5 706 432 0 0 0 chr5 15919533 15919581 -136617678 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 5 706 760 273 160 12 chr5 15921249 15921559 -136615700 - MTEa LTR MaLR -24 355 5 5 706 29 0 0 0 chr5 15921599 15921628 -136615631 + AT_rich Low_complexity Low_complexity 1 29 0 5 706 21 36 0 0 chr5 15921911 15921939 -136615320 + AT_rich Low_complexity Low_complexity 1 28 0 5 706 195 333 80 10 chr5 15922361 15922461 -136614798 - MIR SINE MIR -136 126 20 5 706 2006 171 93 5 chr5 15922534 15922921 -136614338 - MTC LTR MaLR 0 421 1 5 706 459 0 0 0 chr5 15923281 15923332 -136613927 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 706 295 305 75 45 chr5 15923440 15923574 -136613685 + B1F1 SINE Alu 2 139 -10 5 706 366 331 31 39 chr5 15924468 15924597 -136612662 + RSINE1 SINE B4 9 136 -29 5 706 31 0 0 0 chr5 15925048 15925079 -136612180 + AT_rich Low_complexity Low_complexity 1 31 0 5 706 211 324 27 0 chr5 15925158 15925232 -136612027 + ID4 SINE ID 5 80 -3 5 706 21 0 0 0 chr5 15925492 15925513 -136611746 + AT_rich Low_complexity Low_complexity 1 21 0 5 706 192 216 0 0 chr5 15926608 15926659 -136610600 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 706 430 263 109 0 chr5 15926661 15926798 -136610461 - RSINE1 SINE B4 0 165 14 5 706 189 354 119 11 chr5 15927735 15927912 -136609347 + L2 LINE L2 2507 2702 -717 5 706 668 270 31 0 chr5 15928333 15928496 -136608763 + B3A SINE B2 13 180 -18 5 706 402 39 0 0 chr5 15928502 15928554 -136608705 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 706 21 0 0 0 chr5 15928577 15928598 -136608661 + AT_rich Low_complexity Low_complexity 1 21 0 5 706 375 23 0 0 chr5 15928648 15928692 -136608567 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 706 274 261 42 0 chr5 15928722 15928794 -136608465 - B1_Mur2 SINE Alu -22 125 53 5 706 328 330 37 49 chr5 15928732 15928936 -136608323 - RSINE1 SINE B4 -89 203 10 5 706 370 304 117 15 chr5 15929137 15929274 -136607985 + B3 SINE B2 6 156 -60 5 706 3452 224 64 16 chr5 15930007 15930870 -136606389 + RMER13B LTR ERVK 5 908 0 5 706 197 97 31 46 chr5 15930981 15931046 -136606213 + A-rich Low_complexity Low_complexity 4 67 0 5 706 282 247 56 78 chr5 15931175 15931196 -136606063 - L1MA6 LINE L1 -145 6146 6129 5 706 2357 108 135 0 chr5 15931196 15931566 -136605693 + RLTR9B2 LTR ERVK 1 420 0 5 706 290 247 56 78 chr5 15931566 15931724 -136605535 - L1MA6 LINE L1 -166 6134 5971 5 706 1386 231 16 36 chr5 15931729 15932034 -136605225 + ORR1C1 LTR MaLR 6 304 -74 5 706 792 32 0 0 chr5 15932116 15932211 -136605048 + (TG)n Simple_repeat Simple_repeat 1 95 0 5 706 766 300 23 17 chr5 15932214 15932470 -136604789 - B4A SINE B4 -30 262 3 5 706 33 56 0 0 chr5 15932653 15932707 -136604552 + AT_rich Low_complexity Low_complexity 1 54 0 5 706 813 62 23 0 chr5 15932884 15933013 -136604246 + (GA)n Simple_repeat Simple_repeat 2 133 0 5 706 371 301 25 31 chr5 15934288 15934449 -136602810 + Lx8 LINE L1 7001 7160 -313 5 706 362 315 57 32 chr5 15934465 15934711 -136602548 + Lx8 LINE L1 7219 7470 -3 5 706 31 92 0 0 chr5 15934760 15934847 -136602412 + AT_rich Low_complexity Low_complexity 1 87 0 5 706 24 0 0 0 chr5 15934888 15934912 -136602347 + AT_rich Low_complexity Low_complexity 1 24 0 5 706 752 180 22 0 chr5 15935286 15935425 -136601834 + B1_Mur4 SINE Alu 2 143 -7 5 706 965 114 17 17 chr5 15935430 15935608 -136601651 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 5 706 308 148 16 0 chr5 15935608 15935669 -136601590 + GA-rich Low_complexity Low_complexity 1 62 0 5 706 1388 118 276 6 chr5 15935884 15936061 -136601198 - RMER17C LTR ERVK 0 410 232 6 706 369 0 0 0 chr5 15936061 15936102 -136601157 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 706 1388 118 276 6 chr5 15936102 15936247 -136601012 - RMER17C LTR ERVK -179 231 2 6 706 4265 111 17 9 chr5 15936576 15937220 -136600039 - L1_Mus4 LINE L1 0 6636 5988 6 706 1128 44 0 0 chr5 15938605 15938740 -136598519 + B1_Mus2 SINE Alu 2 136 -11 6 706 243 0 0 0 chr5 15938740 15938767 -136598492 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 706 2051 256 86 86 chr5 15939032 15939943 -136597316 - RMER1B Other Other -4 1062 152 6 706 5915 283 20 51 chr5 15940195 15942248 -136595011 + RodERV21-int LTR ERV1 728 2718 -2273 6 706 4237 179 112 6 chr5 15942780 15943557 -136593702 + RMER13A LTR ERVK 1 859 -1 6 706 289 309 28 35 chr5 15943921 15944065 -136593194 + RodERV21-int LTR ERV1 3571 3713 -3893 6 706 1341 121 13 26 chr5 15944987 15945217 -136592042 - L1Md_F2 LINE L1 -2 6580 6354 6 706 3568 344 33 38 chr5 15945770 15947854 -136589405 + RodERV21-int LTR ERV1 2718 4789 -202 6 706 239 311 89 32 chr5 15947894 15948017 -136589242 + RMER4B LTR ERVK 349 478 -107 6 706 282 115 0 0 chr5 15948873 15948925 -136588334 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 6 706 814 256 79 127 chr5 15948939 15949279 -136587980 - MTE2a LTR MaLR -52 327 4 6 706 216 86 0 0 chr5 15950548 15950583 -136586676 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 706 3465 205 31 14 chr5 15950644 15951352 -136585907 + Lx5 LINE L1 6331 7050 0 6 706 230 0 0 32 chr5 15951354 15951385 -136585874 + (TAA)n Simple_repeat Simple_repeat 1 30 0 6 706 200 163 23 0 chr5 15952234 15952277 -136584982 + CT-rich Low_complexity Low_complexity 2 45 0 6 706 829 109 17 33 chr5 15952317 15952498 -136584761 + CT-rich Low_complexity Low_complexity 2 179 0 6 706 332 102 0 20 chr5 15952498 15952548 -136584711 + (TCC)n Simple_repeat Simple_repeat 3 51 0 6 706 392 216 122 10 chr5 15952551 15952649 -136584610 - B1_Mur4 SINE Alu -20 130 22 6 706 211 118 37 56 chr5 15952721 15952775 -136584484 + T-rich Low_complexity Low_complexity 2 54 0 6 706 356 330 110 30 chr5 15952944 15953144 -136584115 - Charlie24 DNA MER1_type -421 2029 1814 6 706 414 222 72 88 chr5 15953354 15953547 -136583712 - Lx9 LINE L1 -20 7624 7435 6 706 3524 292 43 85 chr5 15953767 15955245 -136582014 - Lx5 LINE L1 -15 7035 5613 6 706 3343 40 0 2 chr5 15955245 15955642 -136581617 + MTA_Mm LTR MaLR 1 396 0 6 706 9274 21 5 1 chr5 15955642 15956734 -136580525 + MTA_Mm-int LTR MaLR 1 1096 -2 6 706 3336 40 0 2 chr5 15956736 15957133 -136580126 + MTA_Mm LTR MaLR 1 396 0 6 706 3524 195 11 37 chr5 15957133 15957385 -136579874 - Lx5 LINE L1 -1438 5612 5359 6 706 1050 127 13 0 chr5 15957679 15957837 -136579422 + B2_Mm2 SINE B2 1 160 -35 6 706 248 289 79 0 chr5 15958273 15958349 -136578910 - RLTR28B LTR ERVL 0 481 400 6 706 682 264 11 17 chr5 15958382 15958563 -136578696 - RLTR28B LTR ERVL -168 313 134 6 706 659 163 57 0 chr5 15958570 15958693 -136578566 + B1_Mur4 SINE Alu 1 130 -20 6 706 916 156 0 16 chr5 15958749 15958931 -136578328 + GA-rich Low_complexity Low_complexity 1 179 0 6 706 292 29 0 0 chr5 15958931 15958965 -136578294 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 6 706 486 210 60 139 chr5 15958965 15958978 -136578281 - RLTR28B LTR ERVL -328 153 143 6 706 593 61 12 0 chr5 15958978 15959060 -136578199 + (GAAA)n Simple_repeat Simple_repeat 3 85 0 6 706 486 210 60 139 chr5 15959060 15959212 -136578047 - RLTR28B LTR ERVL -339 142 1 6 706 2235 122 35 102 chr5 15959456 15959965 -136577294 - IAPLTR2_Mm LTR ERVK 0 475 1 6 706 5980 30 20 28 chr5 15959965 15960717 -136576542 - IAPEz-int LTR ERVK 0 6481 5736 6 706 2241 65 0 0 chr5 15960716 15960994 -136576265 - IAPEz-int LTR ERVK -4845 1636 1359 6 706 4249 64 5 26 chr5 15960994 15961575 -136575684 - IAPEz-int LTR ERVK -5819 662 94 6 706 227 267 0 0 chr5 15961578 15961623 -136575636 - RLTR27 LTR ERVK -34 275 231 6 706 604 115 16 124 chr5 15961623 15961752 -136575507 - IAPEz-int LTR ERVK -6358 123 9 6 706 2311 112 57 93 chr5 15961753 15962246 -136575013 - IAPLTR2_Mm LTR ERVK 0 475 1 6 706 455 205 0 25 chr5 15962307 15962427 -136574832 + CT-rich Low_complexity Low_complexity 5 121 0 6 706 183 129 0 0 chr5 15963195 15963226 -136574033 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 6 706 360 97 0 0 chr5 15963393 15963455 -136573804 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 706 24 32 0 0 chr5 15964735 15964766 -136572493 + AT_rich Low_complexity Low_complexity 1 31 0 6 706 1347 291 28 61 chr5 15964766 15965418 -136571841 + L1_Rod LINE L1 3798 4427 -1420 6 706 448 34 0 0 chr5 15965424 15965483 -136571776 + B1_Mm SINE Alu 89 147 0 6 706 384 152 0 0 chr5 15965483 15965549 -136571710 + A-rich Low_complexity Low_complexity 1 66 0 6 706 613 235 29 10 chr5 15965549 15965755 -136571504 + L1_Mur2 LINE L1 4438 4647 -1230 6 706 6581 82 45 6 chr5 15965854 15966847 -136570412 - MusHAL1 LINE L1 -1586 1126 95 6 706 429 248 183 26 chr5 15966946 15967177 -136570082 + L1_Rod LINE L1 5428 5763 -426 6 706 3259 255 72 44 chr5 15967211 15967459 -136569800 + Lx6 LINE L1 6490 6746 -714 6 706 4484 148 14 10 chr5 15967459 15968190 -136569069 - RMER19A LTR ERVK 0 737 4 6 706 3259 255 72 44 chr5 15968190 15968871 -136568388 + Lx6 LINE L1 6747 7444 -16 6 706 193 0 61 30 chr5 15968873 15968906 -136568353 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 706 1059 283 30 57 chr5 15970528 15970590 -136566669 - Lx8 LINE L1 -34 7439 7387 6 706 1035 152 0 0 chr5 15970590 15970768 -136566491 + CT-rich Low_complexity Low_complexity 2 179 0 6 706 1059 283 30 57 chr5 15970768 15971109 -136566150 - Lx8 LINE L1 -87 7386 7047 6 706 1273 293 44 37 chr5 15971121 15971578 -136565681 + Lx8 LINE L1 6316 6775 -698 6 706 231 36 0 0 chr5 15971926 15971954 -136565305 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 706 1523 185 14 127 chr5 15972428 15972799 -136564460 - ORR1A4 LTR MaLR 0 329 1 6 706 376 339 48 53 chr5 15973029 15973216 -136564043 - MER5A DNA MER1_type -2 187 2 6 706 255 61 0 0 chr5 15973392 15973425 -136563834 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 6 706 412 350 33 49 chr5 15973476 15973659 -136563600 - B3A SINE B2 -16 182 3 6 706 589 262 7 0 chr5 15974146 15974291 -136562968 - RSINE1 SINE B4 -17 148 3 6 706 229 367 82 93 chr5 15974375 15974645 -136562614 + L2 LINE L2 2800 3066 -353 6 706 806 191 31 25 chr5 15975069 15975230 -136562029 + MER5B DNA MER1_type 7 168 -10 6 706 192 386 33 25 chr5 15976980 15977102 -136560157 - MIRb SINE MIR -127 141 19 6 706 722 187 22 0 chr5 15977290 15977424 -136559835 + B1_Mur3 SINE Alu 1 137 -12 6 706 197 33 0 32 chr5 15977424 15977455 -136559804 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 6 706 221 242 133 71 chr5 15977495 15977593 -136559666 - B1F SINE Alu -1 148 45 6 706 353 331 57 8 chr5 15977645 15977767 -136559492 + B1F SINE Alu 1 128 -21 6 706 788 150 144 0 chr5 15978810 15978970 -136558289 - B2_Mm2 SINE B2 -12 183 1 6 706 25 31 0 0 chr5 15979886 15979918 -136557341 + AT_rich Low_complexity Low_complexity 1 32 0 6 706 1484 115 21 58 chr5 15980206 15980515 -136556744 - RLTRETN_Mm LTR ERVK -4 379 1 6 706 4307 145 28 0 chr5 15980580 15981306 -136555953 - L1_Mur2 LINE L1 -1249 4628 3883 6 706 359 240 20 10 chr5 15981311 15981412 -136555847 + Lx4B LINE L1 6956 7057 -1 6 706 207 184 0 39 chr5 15981774 15981825 -136555434 + (TCTCTG)n Simple_repeat Simple_repeat 1 49 0 6 706 86 87 0 0 chr5 15982531 15982750 -136554509 + AT_rich Low_complexity Low_complexity 1 219 0 6 706 39 98 0 0 chr5 15982833 15982956 -136554303 + AT_rich Low_complexity Low_complexity 1 123 0 6 706 22 70 0 0 chr5 15983204 15983247 -136554012 + AT_rich Low_complexity Low_complexity 1 43 0 6 706 309 351 89 84 chr5 15983544 15983746 -136553513 - MER20 DNA MER1_type -9 210 8 6 706 1253 217 35 69 chr5 15984183 15984676 -136552583 + RMER6D LTR ERVK 1 524 -196 6 706 7348 131 47 0 chr5 15984807 15985968 -136551291 - Lx2A LINE L1 0 7008 5794 6 706 437 227 0 28 chr5 15986915 15986984 -136550275 + polypyrimidine Low_complexity Low_complexity 77 144 0 6 706 1284 89 0 0 chr5 15986984 15987164 -136550095 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 706 437 227 0 28 chr5 15987164 15987239 -136550020 + polypyrimidine Low_complexity Low_complexity 4 76 0 6 706 183 146 0 0 chr5 15987695 15987736 -136549523 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 6 706 311 244 36 24 chr5 15988078 15988162 -136549097 + MTEb LTR MaLR 278 362 -17 6 706 278 115 0 19 chr5 15988735 15988788 -136548471 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 6 706 21 36 0 0 chr5 15988838 15988866 -136548393 + AT_rich Low_complexity Low_complexity 1 28 0 6 706 652 263 39 59 chr5 15988961 15989193 -136548066 + L1M2 LINE L1 4531 4771 -1372 6 706 330 45 0 0 chr5 15989193 15989237 -136548022 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 706 652 263 39 59 chr5 15989237 15989311 -136547948 + L1M2 LINE L1 4772 4831 -1312 6 706 576 45 34 0 chr5 15989610 15989698 -136547561 + (TC)n Simple_repeat Simple_repeat 1 91 0 6 706 662 209 53 157 chr5 15989768 15990125 -136547134 - Lx7 LINE L1 -21 7675 7356 6 706 34 0 0 0 chr5 15990129 15990163 -136547096 + AT_rich Low_complexity Low_complexity 1 34 0 6 706 210 37 0 0 chr5 15990230 15990257 -136547002 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 88 5100 214 37 36 chr5 15990295 15992483 -136544776 - Lx7 LINE L1 -855 6841 4651 6 707 753 302 14 0 chr5 15992620 15992832 -136544427 + B3 SINE B2 1 215 -1 6 707 232 297 125 9 chr5 15992879 15992991 -136544268 + MT2C_Mm LTR ERVL 89 213 -262 6 707 395 347 7 34 chr5 15992896 15993045 -136544214 + ID_B1 SINE B4 78 222 -2 6 707 385 283 0 29 chr5 15993062 15993164 -136544095 + ID_B1 SINE B4 124 222 -2 6 707 3481 245 28 4 chr5 15993331 15994078 -136543181 + Lx5 LINE L1 6286 7050 0 6 707 511 246 227 40 chr5 15994152 15994605 -136542654 - L1MCa LINE L1 -4393 2358 1821 6 707 257 255 103 9 chr5 15994657 15994764 -136542495 - ORR1D1 LTR MaLR 0 374 258 6 707 338 287 101 22 chr5 15995064 15995242 -136542017 - L1MCa LINE L1 -4993 1758 1567 6 707 576 322 103 5 chr5 15995422 15995922 -136541337 - L1MCa LINE L1 -5336 1415 779 6 707 280 310 111 106 chr5 15996131 15996538 -136540721 - L1MCa LINE L1 -5933 818 410 6 707 202 189 0 0 chr5 15998270 15998307 -136538952 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 707 684 36 0 0 chr5 15998385 15998468 -136538791 + (TA)n Simple_repeat Simple_repeat 1 83 0 6 707 686 259 79 55 chr5 15998654 15998998 -136538261 + Lx9 LINE L1 6261 6754 -719 6 707 474 312 139 10 chr5 15999020 15999221 -136538038 + Lx9 LINE L1 7103 7329 -144 6 707 1043 82 29 6 chr5 15999405 15999577 -136537682 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 6 707 956 133 0 22 chr5 15999588 15999772 -136537487 + GA-rich Low_complexity Low_complexity 1 180 0 6 707 181 83 0 53 chr5 15999780 15999802 -136537457 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 6 707 1028 79 11 27 chr5 15999802 15999985 -136537274 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 707 181 83 0 53 chr5 15999985 16000000 -136537259 + (GGAA)n Simple_repeat Simple_repeat 1 15 0 6 707 870 155 0 18 chr5 16000003 16000221 -136537038 + GA-rich Low_complexity Low_complexity 1 213 0 1 707 278 355 0 0 chr5 16000222 16000329 -136536930 - PB1D9 SINE Alu -11 109 3 2 707 457 269 28 7 chr5 16000586 16000728 -136536531 + B1_Mur1 SINE Alu 5 149 0 3 707 558 67 0 0 chr5 16000734 16000809 -136536450 + (GGA)n Simple_repeat Simple_repeat 2 76 0 4 707 1150 245 86 35 chr5 16000830 16001143 -136536116 + Lx9 LINE L1 7123 7451 -193 5 707 183 202 25 12 chr5 16001271 16001351 -136535908 + (TA)n Simple_repeat Simple_repeat 1 81 0 6 707 31 0 0 0 chr5 16001449 16001480 -136535779 + AT_rich Low_complexity Low_complexity 1 31 0 7 707 1109 82 7 0 chr5 16001567 16001713 -136535546 + B1_Mm SINE Alu 1 147 0 8 707 215 152 22 0 chr5 16006328 16006374 -136530885 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 9 707 2097 148 73 13 chr5 16006391 16006788 -136530471 - MTC LTR MaLR 0 421 1 1 707 2775 209 68 13 chr5 16006995 16007354 -136529905 + RMER6D LTR ERVK 5 369 -351 1 707 234 0 0 0 chr5 16007354 16007380 -136529879 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 707 2775 209 68 13 chr5 16007380 16007695 -136529564 + RMER6D LTR ERVK 370 716 -4 1 707 603 255 7 0 chr5 16007975 16008116 -136529143 - B1_Mur2 SINE Alu -6 143 2 1 707 243 0 0 0 chr5 16008166 16008193 -136529066 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 707 593 252 23 0 chr5 16008675 16008806 -136528453 - ID_B1 SINE B4 -7 217 84 1 707 4351 168 98 8 chr5 16009904 16010737 -136526522 - RMER13B LTR ERVK 0 908 1 1 707 29 70 0 0 chr5 16010794 16010851 -136526408 + AT_rich Low_complexity Low_complexity 1 57 0 1 707 288 0 0 0 chr5 16012298 16012330 -136524929 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 707 216 0 0 0 chr5 16015493 16015517 -136521742 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 1 707 259 308 0 37 chr5 16015834 16015915 -136521344 + ID_B1 SINE B4 144 221 -3 2 707 195 357 12 0 chr5 16016155 16016239 -136521020 - MIRb SINE MIR -64 204 120 2 707 713 147 6 0 chr5 16016519 16016689 -136520570 + (TG)n Simple_repeat Simple_repeat 1 171 0 2 707 536 264 6 89 chr5 16016689 16016868 -136520391 - RSINE1 SINE B4 0 165 2 2 707 2761 257 63 17 chr5 16016964 16017182 -136520077 - RCHARR1 DNA MER1_type -6 968 740 2 707 2420 188 93 45 chr5 16017182 16017841 -136519418 - RMER6C LTR ERVK 0 690 1 2 707 2761 257 63 17 chr5 16017841 16018452 -136518807 - RCHARR1 DNA MER1_type -235 739 101 2 707 29 28 0 0 chr5 16018751 16018787 -136518472 + AT_rich Low_complexity Low_complexity 1 36 0 2 707 24 85 0 0 chr5 16019481 16019540 -136517719 + AT_rich Low_complexity Low_complexity 1 59 0 2 707 211 234 0 0 chr5 16019631 16019678 -136517581 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 707 21 57 0 0 chr5 16021397 16021432 -136515827 + AT_rich Low_complexity Low_complexity 1 35 0 2 707 241 192 13 40 chr5 16021739 16021815 -136515444 - Lx9 LINE L1 0 7644 7571 3 707 225 178 0 0 chr5 16023253 16023298 -136513961 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 707 496 149 49 10 chr5 16023499 16023601 -136513658 - L1_Mur3 LINE L1 -3507 2373 2268 3 707 213 65 0 0 chr5 16023611 16023642 -136513617 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 707 201 175 0 0 chr5 16023654 16023694 -136513565 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 707 529 272 0 29 chr5 16023888 16024028 -136513231 + B1_Mur2 SINE Alu 2 137 -12 3 707 309 308 20 47 chr5 16024040 16024190 -136513069 + L1M2 LINE L1 3071 3216 -2927 3 707 34 24 0 0 chr5 16024559 16024600 -136512659 + AT_rich Low_complexity Low_complexity 1 41 0 3 707 2199 173 37 10 chr5 16024685 16025093 -136512166 + MTC LTR MaLR 3 421 0 3 707 785 180 75 16 chr5 16025093 16025279 -136511980 + MTC-int LTR MaLR 3 199 -1059 3 707 201 211 0 0 chr5 16025365 16025422 -136511837 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 707 571 305 0 50 chr5 16025476 16025635 -136511624 - RSINE1 SINE B4 0 165 15 4 707 1389 268 82 10 chr5 16025741 16026129 -136511130 + MTD LTR MaLR 4 419 0 4 707 2059 116 138 50 chr5 16026206 16026649 -136510610 - RLTR45 LTR ERVK 0 482 1 4 707 349 183 28 0 chr5 16026759 16026830 -136510429 + B4A SINE B4 216 288 -4 4 707 351 78 0 0 chr5 16026839 16026890 -136510369 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 707 588 65 0 0 chr5 16026890 16026966 -136510293 + (GA)n Simple_repeat Simple_repeat 2 78 0 4 707 183 80 0 0 chr5 16027403 16027428 -136509831 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 707 1601 172 14 78 chr5 16027946 16028423 -136508836 + RMER17C LTR ERVK 16 439 -519 4 707 26 0 0 0 chr5 16028485 16028511 -136508748 + AT_rich Low_complexity Low_complexity 1 26 0 4 707 22 56 0 0 chr5 16028543 16028579 -136508680 + AT_rich Low_complexity Low_complexity 1 36 0 4 707 2267 139 106 12 chr5 16028868 16029282 -136507977 - RLTR11B LTR ERVK 0 453 1 5 707 259 342 0 38 chr5 16029282 16029361 -136507898 + ID4 SINE ID 8 83 0 5 707 49 0 0 0 chr5 16031885 16031934 -136505325 + AT_rich Low_complexity Low_complexity 1 49 0 5 707 180 0 0 0 chr5 16032205 16032225 -136505034 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 5 707 555 205 74 0 chr5 16032612 16032734 -136504525 - RMER17C LTR ERVK -279 131 1 5 707 404 323 52 30 chr5 16033232 16033366 -136503893 + B3A SINE B2 46 182 -16 5 707 353 299 123 23 chr5 16033477 16033648 -136503611 + B3A SINE B2 1 188 -10 5 707 23 0 0 0 chr5 16033654 16033677 -136503582 + AT_rich Low_complexity Low_complexity 1 23 0 5 707 723 188 0 40 chr5 16034609 16034759 -136502500 + B1_Mus1 SINE Alu 5 148 0 5 707 216 0 0 0 chr5 16036324 16036348 -136500911 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 707 646 62 21 0 chr5 16037453 16037549 -136499710 + (GA)n Simple_repeat Simple_repeat 1 98 0 6 707 229 83 20 40 chr5 16038087 16038137 -136499122 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 6 707 408 20 0 0 chr5 16038820 16038869 -136498390 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 6 707 366 339 86 17 chr5 16038875 16038992 -136498267 - RSINE1 SINE B4 0 165 41 6 707 2255 238 64 54 chr5 16038999 16039737 -136497522 - RCHARR1 DNA MER1_type -153 821 77 6 707 262 179 28 56 chr5 16040137 16040208 -136497051 - Lx8 LINE L1 -666 6807 6739 6 707 1378 235 28 229 chr5 16040775 16041536 -136495723 - RMER19C LTR ERVK -3 608 1 6 707 2490 175 41 0 chr5 16041849 16042312 -136494947 - L1_Mm LINE L1 -131 5752 5271 6 707 516 132 263 7 chr5 16042311 16042448 -136494811 + Lx2B LINE L1 6827 6998 -2 6 707 317 22 44 0 chr5 16043066 16043111 -136494148 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 707 220 294 32 32 chr5 16044824 16044919 -136492340 + MIRb SINE MIR 164 258 -10 7 707 246 62 0 0 chr5 16045031 16045063 -136492196 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 707 673 321 91 4 chr5 16045067 16045330 -136491929 - B4A SINE B4 -4 288 3 7 707 354 274 143 36 chr5 16045330 16045470 -136491789 - HAL1-3A_ME LINE L1 -420 2438 2284 7 707 216 135 0 0 chr5 16045470 16045507 -136491752 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 7 707 214 309 12 0 chr5 16045511 16045592 -136491667 + CT-rich Low_complexity Low_complexity 1 82 0 7 707 281 278 14 0 chr5 16045634 16045706 -136491553 - ID4 SINE ID -9 74 2 7 707 366 275 18 9 chr5 16049062 16049172 -136488087 + Lx7 LINE L1 7203 7313 -383 7 707 202 143 24 0 chr5 16049273 16049315 -136487944 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7 707 378 0 0 0 chr5 16049428 16049470 -136487789 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 707 816 160 200 22 chr5 16049517 16049702 -136487557 - URR1B DNA MER1_type -7 218 1 8 707 1542 244 25 19 chr5 16049760 16049965 -136487294 - ORR1C1 LTR MaLR -8 370 172 8 707 1254 39 0 0 chr5 16049965 16050121 -136487138 + (GGGAGA)n Simple_repeat Simple_repeat 3 158 0 8 707 1542 244 25 19 chr5 16050121 16050283 -136486976 - ORR1C1 LTR MaLR -207 171 2 8 707 277 320 9 99 chr5 16050546 16050657 -136486602 + MT2B LTR ERVL 157 257 -344 8 707 664 231 7 47 chr5 16050559 16050709 -136486550 + B1_Mur2 SINE Alu 6 149 0 8 707 21 0 0 0 chr5 16051157 16051178 -136486081 + AT_rich Low_complexity Low_complexity 1 21 0 8 707 757 38 19 0 chr5 16051696 16051801 -136485458 + (TG)n Simple_repeat Simple_repeat 1 107 0 8 707 453 169 0 0 chr5 16052623 16052706 -136484553 + (TA)n Simple_repeat Simple_repeat 2 84 0 8 707 22 0 0 0 chr5 16052918 16052940 -136484319 + AT_rich Low_complexity Low_complexity 1 22 0 8 707 1482 229 103 8 chr5 16054168 16054546 -136482713 + MTD LTR MaLR 1 414 -5 8 707 1110 225 72 53 chr5 16056248 16056567 -136480692 + ORR1C2 LTR MaLR 17 341 -43 9 707 762 171 0 0 chr5 16056594 16056717 -136480542 + B1_Mur4 SINE Alu 11 133 -17 9 707 256 335 90 40 chr5 16056954 16057131 -136480128 + MIR SINE MIR 72 257 -5 9 707 22 70 0 0 chr5 16057284 16057327 -136479932 + AT_rich Low_complexity Low_complexity 1 43 0 9 707 252 0 0 0 chr5 16057458 16057486 -136479773 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 9 707 444 147 0 13 chr5 16058018 16058094 -136479165 + B3 SINE B2 139 213 -3 9 707 234 254 26 9 chr5 16058158 16058273 -136478986 + CT-rich Low_complexity Low_complexity 1 117 0 9 707 308 24 24 0 chr5 16060379 16060420 -136476839 + (TGGGGG)n Simple_repeat Simple_repeat 1 42 0 9 707 198 0 0 0 chr5 16061120 16061142 -136476117 + (AGCTG)n Simple_repeat Simple_repeat 2 23 0 9 707 683 120 8 0 chr5 16064235 16064352 -136472907 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 9 707 467 157 45 23 chr5 16064385 16064561 -136472698 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 707 226 200 0 0 chr5 16067175 16067215 -136470044 + (CAT)n Simple_repeat Simple_repeat 3 42 0 1 707 214 325 108 0 chr5 16067614 16067697 -136469562 + PB1D10 SINE Alu 1 92 -25 1 707 675 253 73 28 chr5 16067785 16067964 -136469295 + B3A SINE B2 1 187 -11 1 707 1079 80 0 0 chr5 16069085 16069222 -136468037 - B1_Mus2 SINE Alu -10 137 1 1 707 1297 289 142 12 chr5 16069261 16069846 -136467413 - Lx8 LINE L1 0 7473 6813 1 707 368 269 60 23 chr5 16069990 16070123 -136467136 - B1F1 SINE Alu -9 140 3 1 707 411 21 0 0 chr5 16070427 16070475 -136466784 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 707 1935 49 0 20 chr5 16071621 16071870 -136465389 + L1Md_F3 LINE L1 6327 6570 -14 1 707 360 212 0 0 chr5 16071964 16072101 -136465158 + GA-rich Low_complexity Low_complexity 2 138 0 1 707 387 358 11 39 chr5 16073006 16073186 -136464073 + MER5B DNA MER1_type 3 177 -1 1 707 261 0 0 0 chr5 16075382 16075411 -136461848 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 707 1460 267 56 5 chr5 16075620 16075997 -136461262 - Lx6 LINE L1 -2 7458 7063 1 707 267 230 188 10 chr5 16076854 16076955 -136460304 - L1MA4 LINE L1 0 6300 6182 1 707 27 0 0 0 chr5 16077183 16077210 -136460049 + AT_rich Low_complexity Low_complexity 1 27 0 1 707 537 128 0 0 chr5 16077720 16077733 -136459526 + (GA)n Simple_repeat Simple_repeat 1 13 0 1 707 243 0 0 0 chr5 16077733 16077760 -136459499 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 707 537 128 0 0 chr5 16077760 16077855 -136459404 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 707 609 197 86 14 chr5 16078765 16078904 -136458355 + URR1A DNA MER1_type 36 184 -42 1 707 317 264 194 0 chr5 16080896 16081025 -136456234 + MER5A1 DNA MER1_type 11 164 -2 1 707 630 0 0 0 chr5 16083197 16083267 -136453992 + (CAAAA)n Simple_repeat Simple_repeat 2 71 0 1 707 25 0 0 0 chr5 16083521 16083546 -136453713 + AT_rich Low_complexity Low_complexity 1 25 0 1 707 226 260 0 0 chr5 16084141 16084191 -136453068 - MamRep1161 DNA TcMar -652 305 256 1 707 753 191 74 17 chr5 16088229 16088405 -136448854 + L1_Mur2 LINE L1 5289 5474 -403 1 707 21483 173 58 7 chr5 16088402 16089714 -136447545 - Lx2B LINE L1 -372 6628 5230 1 707 450 0 0 0 chr5 16089714 16089764 -136447495 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 707 21483 177 56 8 chr5 16089764 16090806 -136446453 - Lx2B LINE L1 -657 5229 4076 1 707 288 0 0 0 chr5 16090806 16090838 -136446421 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 707 21483 177 56 8 chr5 16090838 16092833 -136444426 - Lx2B LINE L1 -1811 4075 2029 1 707 285 29 0 0 chr5 16092833 16092867 -136444392 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 707 21483 187 23 40 chr5 16092867 16094175 -136443084 - Lx2B LINE L1 -3858 2028 738 1 707 294 180 0 0 chr5 16094602 16094663 -136442596 + CT-rich Low_complexity Low_complexity 1 61 0 1 707 426 346 22 0 chr5 16094666 16094802 -136442457 - B1F2 SINE Alu -1 148 10 1 707 242 343 111 28 chr5 16094851 16094959 -136442300 - PB1D9 SINE Alu -3 117 1 1 707 1079 83 0 7 chr5 16095356 16095502 -136441757 + B1_Mm SINE Alu 2 146 -1 1 707 236 55 54 18 chr5 16095503 16095559 -136441700 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 1 707 709 363 37 28 chr5 16095704 16096056 -136441203 + MLT1A LTR MaLR 1 355 -19 1 707 347 333 9 9 chr5 16097254 16097366 -136439893 - PB1D10 SINE Alu -2 115 4 1 707 254 260 78 20 chr5 16098908 16099010 -136438249 - PB1D7 SINE Alu -8 112 5 1 707 209 108 27 0 chr5 16099108 16099145 -136438114 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1 707 867 59 78 35 chr5 16100008 16100023 -136437236 - B1_Mus1 SINE Alu 0 148 138 1 707 406 0 0 36 chr5 16100023 16100079 -136437180 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 707 867 59 78 35 chr5 16100079 16100204 -136437055 - B1_Mus1 SINE Alu -11 137 2 1 707 423 207 92 167 chr5 16100204 16100234 -136437025 - B4 SINE B4 -78 214 67 1 707 1543 223 109 46 chr5 16100933 16101455 -136435804 - RLTR31B_Mm LTR ERVK 0 557 3 1 707 681 221 121 84 chr5 16101733 16102089 -136435170 + Lx9 LINE L1 7267 7635 -9 1 707 23 0 0 0 chr5 16102853 16102876 -136434383 + AT_rich Low_complexity Low_complexity 1 23 0 1 707 32 26 0 0 chr5 16103649 16103688 -136433571 + AT_rich Low_complexity Low_complexity 1 39 0 1 707 244 0 27 27 chr5 16105596 16105633 -136431626 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 707 272 180 45 0 chr5 16105964 16106075 -136431184 + (TCTA)n Simple_repeat Simple_repeat 4 119 0 1 707 1674 280 98 28 chr5 16106305 16107051 -136430208 - RCHARR1 DNA MER1_type -27 947 150 1 707 330 332 72 93 chr5 16107052 16107666 -136429593 + L1MC4 LINE L1 6938 7538 -504 1 707 369 0 0 0 chr5 16107873 16107914 -136429345 + (T)n Simple_repeat Simple_repeat 1 41 0 1 707 269 368 19 0 chr5 16109139 16109245 -136428014 - PB1D7 SINE Alu -1 119 12 1 707 244 309 83 57 chr5 16109587 16109753 -136427506 + MIRb SINE MIR 4 172 -90 1 707 22 0 0 0 chr5 16110169 16110191 -136427068 + AT_rich Low_complexity Low_complexity 1 22 0 1 707 435 233 7 13 chr5 16110911 16111063 -136426196 + C-rich Low_complexity Low_complexity 5 155 0 1 707 366 23 0 0 chr5 16111772 16111815 -136425444 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 707 1966 113 83 0 chr5 16112206 16112508 -136424751 - ORR1A2 LTR MaLR 0 327 1 1 707 420 20 0 0 chr5 16113306 16113355 -136423904 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 707 579 40 0 0 chr5 16113898 16113972 -136423287 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 707 709 181 19 13 chr5 16114086 16114243 -136423016 - Lx5 LINE L1 -3 7047 6890 1 707 512 274 98 77 chr5 16116140 16116334 -136420925 - B3A SINE B2 0 198 1 1 707 315 0 0 0 chr5 16116523 16116558 -136420701 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 707 1228 210 9 0 chr5 16117097 16117321 -136419938 + URR1A DNA MER1_type 1 226 0 1 707 1013 115 0 51 chr5 16119237 16119393 -136417866 - B1_Mus1 SINE Alu 0 148 1 1 707 354 98 0 0 chr5 16119802 16119853 -136417406 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 1 707 496 217 56 87 chr5 16119855 16119981 -136417278 - RSINE1 SINE B4 0 165 44 1 707 214 159 45 0 chr5 16121135 16121179 -136416080 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 707 306 73 0 0 chr5 16121179 16121220 -136416039 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 707 262 151 44 71 chr5 16121756 16121829 -136415430 + PB1D10 SINE Alu 14 81 -46 1 708 294 29 0 0 chr5 16122561 16122596 -136414663 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 708 511 324 54 14 chr5 16123384 16123531 -136413728 - B3 SINE B2 -50 166 14 1 708 1238 142 23 5 chr5 16123565 16123784 -136413475 - Lx2 LINE L1 0 6997 6775 1 708 1437 133 0 0 chr5 16123784 16123995 -136413264 - Lx2 LINE L1 -354 6643 6433 1 708 21 0 0 0 chr5 16125055 16125076 -136412183 + AT_rich Low_complexity Low_complexity 1 21 0 1 708 193 119 0 45 chr5 16125495 16125539 -136411720 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 708 231 250 18 0 chr5 16126469 16126525 -136410734 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 1 708 28 0 0 0 chr5 16126634 16126662 -136410597 + AT_rich Low_complexity Low_complexity 1 28 0 1 708 30 27 0 0 chr5 16128225 16128262 -136408997 + AT_rich Low_complexity Low_complexity 1 37 0 1 708 641 206 160 21 chr5 16129344 16129532 -136407727 - Lx8 LINE L1 0 7473 7260 1 708 23 0 0 0 chr5 16129955 16129978 -136407281 + AT_rich Low_complexity Low_complexity 1 23 0 1 708 243 88 0 0 chr5 16130514 16130548 -136406711 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1 708 6488 102 37 37 chr5 16130582 16131635 -136405624 - Lx2 LINE L1 0 6997 5945 1 708 249 323 87 24 chr5 16131635 16131762 -136405497 - Lx5 LINE L1 -25 7025 6891 1 708 325 246 74 25 chr5 16131966 16132087 -136405172 - L1MA6 LINE L1 -8 6292 6166 1 708 1289 268 111 71 chr5 16132271 16133671 -136403588 - L1MA6 LINE L1 -252 6048 4595 1 708 510 268 108 12 chr5 16133691 16133857 -136403402 - B3 SINE B2 -30 186 5 1 708 347 255 195 8 chr5 16134100 16134361 -136402898 - L1MA6 LINE L1 -2218 3922 3613 1 708 622 208 96 0 chr5 16134408 16134533 -136402726 + B1_Mur4 SINE Alu 7 143 -7 1 708 442 209 137 49 chr5 16134597 16134823 -136402436 - Lx9 LINE L1 -1 7643 7398 1 708 21 36 0 0 chr5 16135001 16135029 -136402230 + AT_rich Low_complexity Low_complexity 1 28 0 1 708 216 0 0 0 chr5 16135990 16136014 -136401245 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 1 708 24 0 0 0 chr5 16136341 16136365 -136400894 + AT_rich Low_complexity Low_complexity 1 24 0 1 708 576 0 0 0 chr5 16136712 16136776 -136400483 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 708 4367 147 63 32 chr5 16136777 16137475 -136399784 + Lx3C LINE L1 6045 6755 -221 1 708 249 33 0 0 chr5 16137475 16137505 -136399754 + (TCCCC)n Simple_repeat Simple_repeat 2 31 0 1 708 4367 147 63 32 chr5 16137505 16137708 -136399551 + Lx3C LINE L1 6756 6973 -3 1 708 22 0 0 0 chr5 16137819 16137841 -136399418 + AT_rich Low_complexity Low_complexity 1 22 0 1 708 619 221 119 36 chr5 16138015 16138292 -136398967 - L1MA9 LINE L1 0 6312 6013 1 708 215 365 131 35 chr5 16138868 16139067 -136398192 + L2b LINE L2 2956 3173 -202 1 708 203 417 62 10 chr5 16139209 16139306 -136397953 + L2b LINE L2 3242 3343 -32 1 708 185 351 60 71 chr5 16139440 16139624 -136397635 - L2b LINE L2 -5 3370 3189 1 708 272 91 0 22 chr5 16139632 16139677 -136397582 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1 708 180 125 0 0 chr5 16140708 16140740 -136396519 + (A)n Simple_repeat Simple_repeat 1 32 0 1 708 229 323 42 0 chr5 16141078 16141174 -136396085 - PB1D10 SINE Alu -14 103 4 1 708 225 245 0 19 chr5 16141308 16141362 -136395897 + CT-rich Low_complexity Low_complexity 1 53 0 1 708 734 58 10 0 chr5 16142037 16142141 -136395118 + (TC)n Simple_repeat Simple_repeat 2 106 0 1 708 432 0 0 0 chr5 16142943 16142991 -136394268 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 708 182 250 159 0 chr5 16143868 16143912 -136393347 + MIRm SINE MIR 41 91 -185 2 708 497 323 76 55 chr5 16144021 16144257 -136393002 + MTEa LTR MaLR 3 243 -136 2 708 392 276 53 79 chr5 16144604 16144793 -136392466 + RLTR23 LTR ERV1 247 430 0 2 708 465 19 0 0 chr5 16145309 16145363 -136391896 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 708 216 175 0 0 chr5 16145777 16145817 -136391442 + A-rich Low_complexity Low_complexity 1 40 0 2 708 185 0 40 0 chr5 16145817 16145842 -136391417 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 2 708 1083 221 157 0 chr5 16145848 16146110 -136391149 - Lx7 LINE L1 -337 7359 7057 2 708 241 273 75 8 chr5 16146241 16146374 -136390885 - L1M4 LINE L1 -5288 1254 1113 2 708 538 321 148 17 chr5 16146424 16146782 -136390477 - L1M4 LINE L1 -5574 968 564 2 708 4025 197 51 8 chr5 16146773 16147787 -136389472 + Lx7 LINE L1 5034 6104 -1592 2 708 786 47 47 0 chr5 16147787 16147915 -136389344 + (GA)n Simple_repeat Simple_repeat 1 134 0 2 708 1837 235 89 23 chr5 16147915 16148019 -136389240 + Lx7 LINE L1 6105 6222 -1474 2 708 1139 209 106 20 chr5 16148023 16148325 -136388934 + Lx7 LINE L1 7367 7694 -2 2 708 285 324 97 97 chr5 16148343 16148746 -136388513 - L1M4 LINE L1 -5993 549 147 2 708 684 260 44 10 chr5 16148853 16149059 -136388200 - B3 SINE B2 -3 213 1 2 708 187 303 65 33 chr5 16149146 16149238 -136388021 - MIR SINE MIR -3 259 165 2 708 232 318 22 43 chr5 16149563 16149655 -136387604 - L2b LINE L2 0 3375 3286 2 708 1628 261 123 53 chr5 16150545 16151115 -136386144 + Lx6 LINE L1 6825 7434 -26 2 708 483 18 0 0 chr5 16153407 16153463 -136383796 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 708 352 372 88 39 chr5 16153638 16153923 -136383336 + L2c LINE L2 2964 3262 -125 2 708 1142 44 0 0 chr5 16154105 16154241 -136383018 + B1_Mus1 SINE Alu 3 138 -10 2 708 207 0 0 0 chr5 16154241 16154264 -136382995 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 708 524 101 0 11 chr5 16155441 16155531 -136381728 + (TC)n Simple_repeat Simple_repeat 1 89 0 2 708 3204 118 16 4 chr5 16156555 16157059 -136380200 - Lx LINE L1 -4 6650 6141 2 708 345 231 55 0 chr5 16157085 16157176 -136380083 - MLT1H LTR MaLR -388 161 66 2 708 462 187 0 0 chr5 16157443 16157534 -136379725 + (TA)n Simple_repeat Simple_repeat 1 91 0 2 708 225 0 0 0 chr5 16157534 16157559 -136379700 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 708 497 213 9 27 chr5 16157632 16157743 -136379516 - MLT1A1 LTR MaLR 0 408 300 2 708 297 0 0 0 chr5 16158253 16158286 -136378973 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 708 226 135 0 0 chr5 16158916 16158953 -136378306 + L1MA6 LINE L1 6144 6180 -120 2 708 4222 112 11 2 chr5 16159054 16159691 -136377568 - Lx2 LINE L1 -1 6996 6354 2 708 194 33 0 62 chr5 16161019 16161051 -136376208 + (TTCCC)n Simple_repeat Simple_repeat 4 33 0 2 708 2098 212 49 34 chr5 16161051 16161604 -136375655 - Lx9 LINE L1 -32 7612 7052 2 708 211 220 0 0 chr5 16163012 16163062 -136374197 + T-rich Low_complexity Low_complexity 1 50 0 2 708 1102 62 7 20 chr5 16163063 16163212 -136374047 - B1_Mus2 SINE Alu 0 147 1 2 708 219 219 0 0 chr5 16163370 16163411 -136373848 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 708 210 136 0 0 chr5 16163687 16163731 -136373528 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 708 438 354 56 77 chr5 16163753 16164038 -136373221 - B4 SINE B4 -13 279 1 2 708 1466 192 23 88 chr5 16164162 16164550 -136372709 - RMER16 LTR ERVK 0 533 171 2 708 304 293 0 12 chr5 16165010 16165093 -136372166 + L1MEg LINE L1 1875 1956 -4128 2 708 22140 20 1 1 chr5 16165605 16168532 -136368727 - L1Md_T LINE L1 -386 6196 3263 2 708 3484 34 0 0 chr5 16168532 16168920 -136368339 + L1Md_T LINE L1 6195 6582 0 2 708 735 226 27 67 chr5 16169262 16169485 -136367774 - RMER17C-int LTR ERVK -325 2913 2700 2 708 2805 181 98 29 chr5 16169486 16170068 -136367191 + RMER19B LTR ERVK 272 893 -9 2 708 1151 110 11 11 chr5 16170069 16170244 -136367015 - Lx3_Mus LINE L1 -1052 5957 5783 2 708 621 52 0 20 chr5 16170244 16170343 -136366916 - L1Md_F3 LINE L1 -14 6570 6474 2 708 6591 84 4 28 chr5 16170343 16171266 -136365993 - Lx3_Mus LINE L1 -86 5800 4900 2 708 4921 138 14 25 chr5 16171265 16172069 -136365190 + Lx3B LINE L1 5965 6759 -214 2 708 733 263 46 27 chr5 16172239 16172458 -136364801 + LTRIS4 LTR ERV1 285 507 0 2 708 427 243 44 70 chr5 16172460 16172724 -136364535 + MuRRS4-int LTR ERV1 5 244 -7534 2 708 526 209 6 86 chr5 16173090 16173252 -136364007 + MuRRS4-int LTR ERV1 333 481 -4582 2 708 1937 126 3 87 chr5 16173252 16173608 -136363651 - IAPLTR1a_Mm LTR ERVK -11 326 1 2 708 58045 15 4 18 chr5 16173608 16180182 -136357077 - IAPEz-int LTR ERVK 0 6481 1 2 708 1948 134 5 87 chr5 16180183 16180561 -136356698 - IAPLTR1a_Mm LTR ERVK -11 326 1 2 708 846 205 93 6 chr5 16180561 16180733 -136356526 + MuRRS4-int LTR ERV1 489 675 -4388 2 708 5055 122 18 21 chr5 16180768 16181541 -136355718 + RMER16-int LTR ERVK 678 1448 -3958 2 708 301 173 0 0 chr5 16181525 16181577 -136355682 + MuRRS4-int LTR ERV1 750 801 -4262 2 708 723 211 23 28 chr5 16181603 16181779 -136355480 - LSU-rRNA_Hsa rRNA rRNA -1365 3670 3496 2 708 1509 272 26 2 chr5 16181826 16182311 -136354948 + MuRRS4-int LTR ERV1 906 1441 -3622 2 708 4676 191 52 65 chr5 16182293 16184534 -136352725 + MuRRS4-int LTR ERV1 1300 4271 -792 2 708 850 200 136 13 chr5 16184525 16184753 -136352506 + MuRRS4-int LTR ERV1 4788 5043 -20 2 708 699 265 48 31 chr5 16184776 16185011 -136352248 + LTRIS4 LTR ERV1 254 489 -18 2 708 473 229 110 102 chr5 16185017 16185345 -136351914 - MYSERV-int LTR ERVK -742 5808 5538 2 708 261 154 0 37 chr5 16185384 16185438 -136351821 - MYSERV-int LTR ERVK -5193 944 893 2 708 405 0 0 0 chr5 16186836 16186881 -136350378 + (A)n Simple_repeat Simple_repeat 1 45 0 2 708 1838 182 22 81 chr5 16186883 16187112 -136350147 - RMER10A LTR ERVL -8 434 214 2 708 2544 173 31 26 chr5 16187112 16187569 -136349690 + RMER6B LTR ERVK 1 459 -2 2 708 1838 182 22 81 chr5 16187569 16187798 -136349461 - RMER10A LTR ERVL -229 213 3 2 708 401 379 9 5 chr5 16189257 16189469 -136347790 + Lx9 LINE L1 7209 7421 -223 2 708 1473 256 119 70 chr5 16189509 16190210 -136347049 + RMER13B LTR ERVK 288 904 -4 2 708 703 298 129 22 chr5 16190179 16190438 -136346821 + MTE2a-int LTR MaLR 764 1051 -529 2 708 703 207 56 28 chr5 16190438 16190582 -136346677 + B1_Mur3 SINE Alu 2 149 0 2 708 298 303 45 27 chr5 16190586 16190698 -136346561 + MTE2a-int LTR MaLR 1253 1366 -4 2 708 747 309 60 43 chr5 16190735 16191104 -136346155 + MTE2a LTR MaLR 5 379 0 2 708 23 54 0 0 chr5 16191142 16191179 -136346080 + AT_rich Low_complexity Low_complexity 1 37 0 2 708 287 212 85 66 chr5 16191414 16191520 -136345739 + MIR SINE MIR 155 262 0 2 708 350 188 14 0 chr5 16192259 16192328 -136344931 - MTC LTR MaLR 0 421 352 2 708 388 171 0 0 chr5 16192321 16192397 -136344862 + ORR1A3-int LTR MaLR 682 757 -1206 2 708 2967 128 25 33 chr5 16192330 16192809 -136344450 + MT2B LTR ERVL 127 601 0 2 708 4027 204 118 6 chr5 16192810 16193710 -136343549 - MTC-int LTR MaLR -257 1001 1 2 708 1821 174 33 44 chr5 16193710 16194071 -136343188 - MTC LTR MaLR -2 419 63 2 708 503 317 47 75 chr5 16194090 16194601 -136342658 - RLTR12B LTR ERVK -24 504 1 2 708 483 123 0 0 chr5 16194604 16194677 -136342582 - MTC LTR MaLR -348 73 1 2 708 267 253 0 0 chr5 16194764 16194843 -136342416 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 708 709 200 0 11 chr5 16194845 16195022 -136342237 + Lx9 LINE L1 7464 7638 -6 2 708 30730 100 7 12 chr5 16195180 16197044 -136340215 - L1Md_F LINE L1 -225 5658 3830 2 708 3512 43 8 0 chr5 16197044 16197437 -136339822 + MTA_Mm LTR MaLR 1 396 0 2 708 9189 57 6 1 chr5 16197437 16198530 -136338729 + MTA_Mm-int LTR MaLR 1 1098 0 2 708 3385 29 42 0 chr5 16198530 16198908 -136338351 + MTA_Mm LTR MaLR 1 394 -2 2 708 30730 113 22 12 chr5 16198908 16202475 -136334784 - L1Md_F LINE L1 -2054 3829 196 2 708 10392 98 4 2 chr5 16202482 16204012 -136333247 - L1_Mus2 LINE L1 -619 5947 4416 2 708 297 0 0 0 chr5 16204456 16204489 -136332770 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 708 357 270 0 13 chr5 16204510 16204585 -136332674 + RSINE1 SINE B4 8 81 -84 2 708 6637 158 36 30 chr5 16204588 16205829 -136331430 - MYSERV6-int LTR ERVK -2712 6247 4999 2 708 317 24 24 0 chr5 16205844 16205886 -136331373 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2 708 375 202 43 0 chr5 16205993 16206087 -136331172 + Lx2B LINE L1 6903 7000 0 2 708 11500 166 70 38 chr5 16206221 16206464 -136330795 - MYSERV6-int LTR ERVK -3841 5118 4886 2 708 2985 135 9 9 chr5 16206464 16206904 -136330355 - Lx3B LINE L1 -3 6970 6531 2 708 11500 166 70 38 chr5 16206904 16208508 -136328751 - MYSERV6-int LTR ERVK -4074 4885 3219 2 708 2213 199 111 24 chr5 16208508 16208967 -136328292 + RLTR19 LTR ERVK 1 499 0 2 708 11500 166 70 38 chr5 16208967 16209631 -136327628 - MYSERV6-int LTR ERVK -5741 3218 2525 2 708 726 155 24 12 chr5 16209654 16209824 -136327435 + CT-rich Low_complexity Low_complexity 5 176 0 2 708 1320 276 22 20 chr5 16209831 16210231 -136327028 - MurERV4-int LTR ERVK -2187 3073 2673 2 708 317 279 115 0 chr5 16210232 16210336 -136326923 + Lx5 LINE L1 6547 6662 -396 2 708 18642 22 0 0 chr5 16210394 16213200 -136324059 - L1Md_T LINE L1 0 6582 3777 2 708 934 300 26 24 chr5 16213200 16213631 -136323628 - RMER19B LTR ERVK -53 849 142 2 708 916 237 16 99 chr5 16213630 16213934 -136323325 - RMER19C LTR ERVK -332 279 1 2 708 1591 214 18 3 chr5 16213934 16214293 -136322966 + Lx5 LINE L1 6627 7023 -35 2 708 367 244 0 87 chr5 16214277 16214403 -136322856 + Lx5 LINE L1 6938 7052 -6 2 708 1183 169 87 25 chr5 16214410 16214652 -136322607 + RMER6B LTR ERVK 202 458 -3 2 708 3533 194 45 58 chr5 16214654 16215135 -136322124 + MYSERV6-int LTR ERVK 2 458 -8501 2 708 1225 122 32 5 chr5 16215135 16215324 -136321935 + B2_Mm2 SINE B2 1 194 -1 2 708 3533 194 45 58 chr5 16215324 16215722 -136321537 + MYSERV6-int LTR ERVK 459 870 -8089 2 708 5106 70 27 1 chr5 16215722 16216384 -136320875 + L1Md_F2 LINE L1 4908 5586 -297 2 708 8062 65 5 5 chr5 16216384 16217361 -136319898 + L1Md_F2 LINE L1 5587 6563 -19 2 708 207 0 0 0 chr5 16217364 16217387 -136319872 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 708 1021 131 40 6 chr5 16217395 16217572 -136319687 + B2_Mm2 SINE B2 12 194 -1 2 708 191 100 66 16 chr5 16217574 16217635 -136319624 + (CAAAC)n Simple_repeat Simple_repeat 2 65 0 2 708 198 0 0 0 chr5 16217632 16217654 -136319605 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2 708 320 0 25 0 chr5 16217658 16217698 -136319561 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2 708 1831 160 54 25 chr5 16217698 16218046 -136319213 + MYSERV6-int LTR ERVK 856 1214 -7745 2 708 1626 56 23 0 chr5 16218046 16218260 -136318999 - MusHAL1 LINE L1 -2226 486 268 2 708 264 275 0 0 chr5 16218268 16218337 -136318922 + RLTR6-int LTR ERV1 4479 4547 -3231 2 708 555 324 17 0 chr5 16218565 16218741 -136318518 - RLTR6-int LTR ERV1 -2383 5395 5217 2 708 298 250 59 12 chr5 16218743 16218828 -136318431 - MuRRS4-int LTR ERV1 -1412 3651 3563 2 708 1448 210 182 56 chr5 16219051 16219551 -136317708 + RMER2 LTR ERV1 1 563 -4 2 708 1012 182 136 1 chr5 16219553 16219867 -136317392 - L1_Mur2 LINE L1 -6413 1299 885 2 708 997 134 75 93 chr5 16220179 16220393 -136316866 - RMER6B LTR ERVK -251 210 1 2 708 2721 197 39 14 chr5 16220394 16221042 -136316217 - L1_Mur3 LINE L1 -2223 3657 2994 2 708 234 255 216 0 chr5 16221536 16221638 -136315621 - L1MA8 LINE L1 -26 6265 6142 2 708 377 301 65 0 chr5 16221688 16221841 -136315418 - L1MA6 LINE L1 -24 6276 6114 2 708 1546 182 156 25 chr5 16222391 16222796 -136314463 + RMER6B LTR ERVK 1 458 -3 3 708 2597 62 23 149 chr5 16223139 16223609 -136313650 - RLTR10A LTR ERVK 0 411 1 3 708 5009 73 4 31 chr5 16223609 16224342 -136312917 - RLTR10-int LTR ERVK -1 1986 1274 3 708 216 0 0 0 chr5 16224429 16224453 -136312806 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 708 2624 289 40 37 chr5 16224487 16226951 -136310308 - RLTR10-int LTR ERVK -1329 5213 986 3 708 924 326 48 10 chr5 16226972 16227551 -136309708 - RLTR10-int LTR ERVK -5120 1422 822 3 708 1042 148 16 11 chr5 16227682 16227873 -136309386 - RLTR10-int LTR ERVK -988 999 808 3 708 1875 57 4 12 chr5 16228334 16228584 -136308675 - RLTR10-int LTR ERVK -1438 549 302 3 708 2544 60 23 170 chr5 16228584 16229066 -136308193 - RLTR10A LTR ERVK 0 411 1 3 708 217 308 19 0 chr5 16229151 16229203 -136308056 - B4A SINE B4 -216 76 24 3 708 210 71 0 0 chr5 16229262 16229290 -136307969 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 3 708 280 354 31 23 chr5 16229387 16229517 -136307742 - L2a LINE L2 -9 3417 3287 3 708 200 167 0 0 chr5 16230172 16230202 -136307057 + polypyrimidine Low_complexity Low_complexity 1 30 0 3 708 266 216 14 0 chr5 16230217 16230291 -136306968 + T-rich Low_complexity Low_complexity 5 79 0 3 708 350 308 8 8 chr5 16230300 16230421 -136306838 + CT-rich Low_complexity Low_complexity 3 123 0 3 708 369 317 105 8 chr5 16230819 16231028 -136306231 + MIR SINE MIR 15 249 -19 3 708 286 341 67 0 chr5 16232642 16232806 -136304453 - Lx8 LINE L1 -418 7055 6881 3 708 831 303 82 37 chr5 16232902 16233262 -136303997 - L1MC1 LINE L1 -84 6249 5873 3 708 1415 254 61 5 chr5 16233262 16233658 -136303601 + MTD LTR MaLR 2 419 0 3 708 831 303 82 37 chr5 16233658 16233860 -136303399 - L1MC1 LINE L1 -461 5872 5662 3 708 3569 65 8 8 chr5 16233956 16234455 -136302804 - L1_Mus2 LINE L1 -209 6357 5859 3 708 1572 87 9 4 chr5 16234455 16234687 -136302572 + L1_Mus2 LINE L1 6333 6565 -1 3 708 319 302 25 51 chr5 16234970 16235127 -136302132 - MIR SINE MIR -11 251 99 3 708 233 29 29 0 chr5 16235392 16235426 -136301833 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 3 708 3862 76 5 24 chr5 16235429 16236023 -136301236 - RLTR19-int LTR ERVK -4125 2012 1430 3 708 385 339 0 6 chr5 16236072 16236253 -136301006 + (CCA)n Simple_repeat Simple_repeat 1 180 0 3 708 1380 309 36 40 chr5 16237561 16238081 -136299178 - MER82 DNA MER2_type 0 653 136 3 708 431 266 40 23 chr5 16238337 16238510 -136298749 + L1MC4 LINE L1 6734 6909 -1133 3 708 447 68 0 0 chr5 16238755 16238814 -136298445 + (TCC)n Simple_repeat Simple_repeat 3 61 0 3 708 230 235 0 14 chr5 16239503 16239572 -136297687 - L1M4 LINE L1 -3096 3050 2983 3 708 23 0 0 0 chr5 16239598 16239621 -136297638 + AT_rich Low_complexity Low_complexity 1 23 0 3 708 221 232 0 18 chr5 16239694 16239751 -136297508 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 708 531 0 0 0 chr5 16239753 16239812 -136297447 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 3 708 536 285 135 9 chr5 16239897 16240237 -136297022 - L1M4b LINE L1 -3469 3534 3152 3 708 598 333 67 33 chr5 16241177 16241537 -136295722 + MT2A LTR ERVL 1 372 -161 3 708 401 319 75 35 chr5 16241725 16242072 -136295187 - L1M4b LINE L1 -5543 1791 1431 3 708 234 0 0 0 chr5 16242157 16242183 -136295076 + (T)n Simple_repeat Simple_repeat 1 26 0 3 708 209 164 14 56 chr5 16242190 16242261 -136294998 + T-rich Low_complexity Low_complexity 2 69 0 3 708 325 224 182 19 chr5 16242745 16242883 -136294376 - RMER20B LTR ERVK -248 379 234 3 708 2101 121 16 0 chr5 16243169 16243483 -136293776 + ORR1A2 LTR MaLR 1 319 -8 3 708 210 246 0 16 chr5 16243953 16244015 -136293244 + (TTTG)n Simple_repeat Simple_repeat 4 64 0 3 708 646 308 54 36 chr5 16244022 16244384 -136292875 - MT2A LTR ERVL -125 408 5 3 708 4030 143 30 42 chr5 16244460 16245321 -136291938 + L1Md_F LINE L1 355 1205 -5411 3 708 34830 32 0 0 chr5 16245327 16249744 -136287515 + L1Md_F LINE L1 1170 5586 -297 3 708 8009 56 0 0 chr5 16249744 16250740 -136286519 + L1Md_T LINE L1 5587 6582 0 3 708 243 61 0 0 chr5 16250875 16250908 -136286351 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 3 708 773 188 30 6 chr5 16251332 16251498 -136285761 - RMER5 LTR ERV1 -27 507 338 3 708 227 250 18 0 chr5 16251733 16251789 -136285470 + Tigger5 DNA MER2_type 2244 2300 -106 3 708 320 238 36 0 chr5 16251852 16251936 -136285323 - L1MA8 LINE L1 -198 6093 6007 3 88 6837 90 9 17 chr5 16252312 16253640 -136283619 - L1_Mus2 LINE L1 0 6566 5252 3 709 312 48 0 0 chr5 16253828 16253870 -136283389 + (T)n Simple_repeat Simple_repeat 1 42 0 3 709 1210 29 0 0 chr5 16253872 16254012 -136283247 - B1_Mus2 SINE Alu -7 140 1 3 709 225 178 0 0 chr5 16254893 16254938 -136282321 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 3 709 297 266 0 25 chr5 16254945 16255026 -136282233 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 3 709 1009 287 48 39 chr5 16255030 16255367 -136281892 - RMER5 LTR ERV1 -194 340 1 3 709 36213 30 0 1 chr5 16255531 16262111 -136275148 - L1Md_T LINE L1 0 6585 1 3 709 6653 124 25 5 chr5 16262528 16263872 -136273387 - Lx LINE L1 -7 6647 5285 3 709 6420 103 28 9 chr5 16263974 16264940 -136272319 - Lx3_Mus LINE L1 0 7009 6026 3 709 2999 80 0 27 chr5 16264940 16265496 -136271763 + Lx3_Mus LINE L1 5491 6028 -981 3 709 17864 170 18 5 chr5 16265499 16269058 -136268201 - Lx LINE L1 -585 5298 1696 3 709 1110 246 231 8 chr5 16269070 16269472 -136267787 - L1VL2 LINE L1 -5650 685 194 3 709 1273 274 65 29 chr5 16269474 16269963 -136267296 - L1VL2 LINE L1 -5820 515 9 3 709 419 181 99 2 chr5 16269963 16270074 -136267185 - L1VL2 LINE L1 -6109 226 115 3 709 24 0 0 0 chr5 16270133 16270157 -136267102 + AT_rich Low_complexity Low_complexity 1 24 0 3 709 295 242 20 0 chr5 16270480 16270579 -136266680 + CT-rich Low_complexity Low_complexity 3 103 0 3 709 414 0 0 0 chr5 16271919 16271965 -136265294 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 709 2964 151 8 8 chr5 16272214 16272703 -136264556 + Lx2 LINE L1 6503 6991 -6 3 709 439 319 17 25 chr5 16272952 16273071 -136264188 - RSINE1 SINE B4 -45 120 3 3 709 441 178 85 0 chr5 16273822 16273940 -136263319 - Lx9 LINE L1 -1 7643 7516 3 709 695 209 13 7 chr5 16273946 16274100 -136263159 + Lx9 LINE L1 7320 7474 -170 3 709 2441 58 0 9 chr5 16274115 16274430 -136262829 + L1Md_F2 LINE L1 6259 6570 -12 3 709 842 286 92 37 chr5 16274489 16274816 -136262443 - ORR1E LTR MaLR -10 349 5 3 709 327 350 46 53 chr5 16274825 16274976 -136262283 - RSINE1 SINE B4 0 165 16 3 709 561 30 0 0 chr5 16275002 16275069 -136262190 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 3 709 27 0 0 0 chr5 16275840 16275867 -136261392 + AT_rich Low_complexity Low_complexity 1 27 0 3 709 405 0 0 0 chr5 16275892 16275937 -136261322 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 709 452 333 145 15 chr5 16276010 16276342 -136260917 - L1ME2 LINE L1 -231 5933 5559 3 709 1222 274 77 25 chr5 16276784 16277379 -136259880 + L1_Mur3 LINE L1 4078 4703 -1177 3 709 2231 88 10 0 chr5 16277384 16277689 -136259570 - L1_Mus1 LINE L1 -214 6353 6046 3 709 877 260 27 0 chr5 16277700 16277958 -136259301 + L1_Mur3 LINE L1 4838 5102 -778 3 709 233 349 70 0 chr5 16278286 16278372 -136258887 + MLT1G LTR MaLR 103 194 -385 3 709 2460 174 90 117 chr5 16278516 16279225 -136258034 - RMER6C LTR ERVK 0 690 1 3 709 292 345 0 12 chr5 16279264 16279349 -136257910 + MLT1G LTR MaLR 353 436 -155 3 709 1201 54 0 0 chr5 16280489 16280637 -136256622 - B1_Mus1 SINE Alu 0 148 1 3 709 208 211 0 34 chr5 16281300 16281359 -136255900 + (TTG)n Simple_repeat Simple_repeat 2 58 0 3 709 521 254 22 0 chr5 16281362 16281500 -136255759 - B1_Mur2 SINE Alu -7 142 2 3 709 1677 208 15 12 chr5 16281852 16282183 -136255076 + ORR1B1 LTR MaLR 60 391 -3 3 709 327 341 115 38 chr5 16285159 16285342 -136251917 - MLT1J2 LTR MaLR -139 309 113 3 709 393 22 0 0 chr5 16285721 16285767 -136251492 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 709 306 0 0 0 chr5 16285767 16285800 -136251459 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 709 1444 181 105 12 chr5 16285850 16286174 -136251085 - ORR1B1 LTR MaLR 0 394 41 3 709 2312 107 3 0 chr5 16287208 16287534 -136249725 - ORR1A2 LTR MaLR 0 327 1 3 709 705 47 0 102 chr5 16287964 16288082 -136249177 - L1_Mus1 LINE L1 0 6567 6462 3 709 25 51 0 0 chr5 16289025 16289064 -136248195 + AT_rich Low_complexity Low_complexity 1 39 0 3 709 1217 166 63 8 chr5 16289232 16289487 -136247772 - RMER6C LTR ERVK 0 690 422 3 709 816 20 0 0 chr5 16289491 16289589 -136247670 + (CAGAA)n Simple_repeat Simple_repeat 4 101 0 3 709 243 274 90 50 chr5 16289608 16289708 -136247551 - B1_Mur1 SINE Alu -32 117 14 3 709 1300 80 5 5 chr5 16289708 16289897 -136247362 - L1_Mm LINE L1 -428 5455 5267 3 709 3332 70 5 2 chr5 16289897 16290339 -136246920 + L1_Mus2 LINE L1 6123 6565 -1 3 709 207 0 0 0 chr5 16290342 16290365 -136246894 + (A)n Simple_repeat Simple_repeat 1 23 0 3 709 573 142 8 131 chr5 16290365 16290487 -136246772 - MT2B LTR ERVL -318 283 177 3 709 358 122 0 0 chr5 16290464 16290513 -136246746 - RMER6C LTR ERVK -599 157 109 3 709 369 0 0 0 chr5 16290542 16290583 -136246676 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 709 427 323 8 23 chr5 16290610 16290740 -136246519 + ORR1E LTR MaLR 1 128 -231 3 709 807 153 47 0 chr5 16291633 16291783 -136245476 + RMER19C LTR ERVK 1 157 -454 3 709 418 168 30 0 chr5 16292694 16292795 -136244464 - Lx9 LINE L1 0 7644 7541 3 709 299 171 86 0 chr5 16292807 16292877 -136244382 - Lx9 LINE L1 -174 7470 7395 3 709 824 232 5 16 chr5 16292855 16293048 -136244211 + Lx9 LINE L1 6753 6943 -701 3 709 333 338 84 103 chr5 16293185 16293554 -136243705 - LTR40b LTR ERVL -100 362 1 3 709 28 86 0 0 chr5 16294925 16294995 -136242264 + AT_rich Low_complexity Low_complexity 1 70 0 3 709 244 292 26 9 chr5 16295022 16295136 -136242123 + Charlie7 DNA MER1_type 1720 1835 -777 3 709 297 297 87 24 chr5 16295158 16295365 -136241894 - Lx7 LINE L1 -8 7688 7469 3 709 521 281 5 46 chr5 16295357 16295551 -136241708 - Lx7 LINE L1 -377 7319 7134 3 709 389 409 43 18 chr5 16295823 16296104 -136241155 - B4A SINE B4 -4 288 1 3 709 21 36 0 0 chr5 16296134 16296162 -136241097 + AT_rich Low_complexity Low_complexity 1 28 0 3 709 483 63 0 0 chr5 16296312 16296375 -136240884 + (GA)n Simple_repeat Simple_repeat 1 63 0 3 709 21 0 0 0 chr5 16296938 16296959 -136240300 + AT_rich Low_complexity Low_complexity 1 21 0 3 709 27 29 0 0 chr5 16298792 16298826 -136238433 + AT_rich Low_complexity Low_complexity 1 34 0 3 709 767 310 46 4 chr5 16299904 16300163 -136237096 - B4A SINE B4 -18 274 5 3 709 1034 85 0 0 chr5 16300607 16300748 -136236511 + B1_Mus1 SINE Alu 5 145 -3 4 709 486 0 0 0 chr5 16300750 16300804 -136236455 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 4 709 186 263 0 0 chr5 16300915 16300953 -136236306 + L2 LINE L2 527 564 -2855 4 709 682 373 26 7 chr5 16301362 16301635 -136235624 - B4A SINE B4 -14 278 1 4 709 24 0 0 0 chr5 16301935 16301959 -136235300 + AT_rich Low_complexity Low_complexity 1 24 0 4 709 938 275 9 0 chr5 16302008 16302219 -136235040 - B3 SINE B2 0 216 4 4 709 204 0 0 77 chr5 16303334 16303373 -136233886 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 4 709 1176 54 0 0 chr5 16303374 16303521 -136233738 - B1_Mm SINE Alu 0 147 1 4 709 1855 200 3 21 chr5 16304065 16304448 -136232811 - ORR1C1 LTR MaLR -2 376 1 4 709 2528 191 17 26 chr5 16304935 16305463 -136231796 - Lx3C LINE L1 -436 6540 6018 4 709 703 343 38 41 chr5 16305766 16306058 -136231201 + B4A SINE B4 1 291 -1 4 709 5599 87 9 14 chr5 16306348 16307130 -136230129 - L1_Mus2 LINE L1 -2 6564 5787 4 709 34 72 0 0 chr5 16307158 16307227 -136230032 + AT_rich Low_complexity Low_complexity 1 69 0 4 709 358 332 233 22 chr5 16307632 16308186 -136229073 - Cheshire DNA MER1_type -1703 717 47 4 709 203 339 46 46 chr5 16308207 16308337 -136228922 - L2 LINE L2 -641 2778 2649 4 709 188 316 206 34 chr5 16308572 16308864 -136228395 - L2 LINE L2 -968 2451 2110 4 709 28 71 0 0 chr5 16309633 16309689 -136227570 + AT_rich Low_complexity Low_complexity 1 56 0 4 709 3442 100 2 6 chr5 16310078 16310581 -136226678 - L1_Mus4 LINE L1 -6 6630 6130 4 709 27 0 0 0 chr5 16312155 16312182 -136225077 + AT_rich Low_complexity Low_complexity 1 27 0 4 709 1054 154 36 1 chr5 16313048 16313249 -136224010 - URR1B DNA MER1_type -2 223 1 4 709 747 33 0 0 chr5 16314299 16314389 -136222870 + (TG)n Simple_repeat Simple_repeat 2 91 0 4 709 207 188 0 0 chr5 16316398 16316446 -136220813 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 4 709 270 250 21 21 chr5 16316448 16316542 -136220717 - Lx LINE L1 -13 6641 6548 4 709 452 329 126 21 chr5 16316545 16316784 -136220475 - MLT2F LTR ERVL -117 546 283 4 709 214 281 35 0 chr5 16318108 16318165 -136219094 - ID4_ SINE ID -10 73 15 4 709 249 274 80 27 chr5 16318170 16318245 -136219014 - PB1D10 SINE Alu -31 118 40 4 709 26 0 0 0 chr5 16318322 16318348 -136218911 + AT_rich Low_complexity Low_complexity 1 26 0 4 709 594 302 74 5 chr5 16318549 16318626 -136218633 + B4 SINE B4 3 80 -212 4 709 243 0 0 0 chr5 16318626 16318653 -136218606 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 709 594 302 74 5 chr5 16318653 16318765 -136218494 + B4 SINE B4 81 204 -88 4 709 718 261 101 44 chr5 16318766 16318950 -136218309 + Lx9 LINE L1 7321 7518 -126 4 709 333 0 0 0 chr5 16318950 16318987 -136218272 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 709 718 261 101 44 chr5 16318987 16319099 -136218160 + Lx9 LINE L1 7519 7634 -10 4 709 22 0 0 0 chr5 16319106 16319128 -136218131 + AT_rich Low_complexity Low_complexity 1 22 0 4 709 712 319 23 19 chr5 16319703 16319917 -136217342 + B3 SINE B2 2 216 0 4 709 483 129 54 0 chr5 16320447 16320540 -136216719 + L1Md_F3 LINE L1 6473 6570 -14 4 709 22 0 0 0 chr5 16320618 16320640 -136216619 + AT_rich Low_complexity Low_complexity 1 22 0 4 709 26 0 0 0 chr5 16320730 16320756 -136216503 + AT_rich Low_complexity Low_complexity 1 26 0 4 709 478 350 63 56 chr5 16320926 16321195 -136216064 + B4A SINE B4 3 273 -19 4 709 582 15 0 0 chr5 16321856 16321923 -136215336 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 4 709 250 234 0 15 chr5 16324128 16324193 -136213066 + B1_Mur3 SINE Alu 85 148 -1 4 709 8331 37 0 2 chr5 16324607 16325649 -136211610 - L1Md_F2 LINE L1 0 6582 5543 4 709 1604 334 64 50 chr5 16325701 16326737 -136210522 - Lx8 LINE L1 -185 7288 6239 4 709 24 32 0 0 chr5 16326752 16326783 -136210476 + AT_rich Low_complexity Low_complexity 1 31 0 4 709 523 200 0 9 chr5 16326801 16326907 -136210352 - B1_Mur2 SINE Alu -3 146 42 4 709 344 0 0 161 chr5 16326910 16327090 -136210169 + (CTCTG)n Simple_repeat Simple_repeat 5 155 0 4 709 305 193 0 34 chr5 16327091 16327150 -136210109 - B1_Mus2 SINE Alu -88 59 3 4 709 261 83 0 0 chr5 16328676 16328712 -136208547 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 709 26 82 0 0 chr5 16329002 16329063 -136208196 + AT_rich Low_complexity Low_complexity 1 61 0 4 709 834 233 0 6 chr5 16331354 16331531 -136205728 - Lx9 LINE L1 -233 7411 7236 4 709 854 335 43 40 chr5 16331922 16332295 -136204964 + MTEa LTR MaLR 6 379 0 4 709 22 0 0 0 chr5 16332655 16332677 -136204582 + AT_rich Low_complexity Low_complexity 1 22 0 4 709 201 39 0 0 chr5 16333291 16333317 -136203942 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 709 219 283 0 0 chr5 16333320 16333373 -136203886 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 4 709 2835 94 37 0 chr5 16334325 16334728 -136202531 - BGLII LTR ERVK -1 420 3 4 709 1743 248 70 5 chr5 16335240 16335686 -136201573 + Lx6 LINE L1 6986 7460 0 4 709 225 333 95 14 chr5 16335860 16336082 -136201177 - Lx7 LINE L1 -346 7350 7111 4 709 903 258 83 33 chr5 16336087 16336424 -136200835 - Lx7 LINE L1 -1748 5948 5595 4 709 2074 254 21 4 chr5 16336447 16336913 -136200346 - Lx5 LINE L1 -1 7049 6576 4 709 7781 94 1 3 chr5 16336908 16338283 -136198976 + L1_Mus3 LINE L1 5262 6634 -4 4 709 3681 162 47 5 chr5 16338366 16339070 -136198189 + L1_Mur2 LINE L1 5159 5866 -11 4 709 271 170 21 0 chr5 16339071 16339118 -136198141 + Lx5 LINE L1 6477 6524 -526 4 709 1286 259 31 22 chr5 16339117 16339625 -136197634 - L1_Mur3 LINE L1 -290 5590 5084 4 709 1075 301 44 32 chr5 16340944 16341377 -136195882 - BGLII_B LTR ERVK -3 438 1 4 709 258 292 62 0 chr5 16341459 16341589 -136195670 + MER33 DNA MER1_type 161 298 -26 4 709 22 35 0 0 chr5 16343732 16343761 -136193498 + AT_rich Low_complexity Low_complexity 1 29 0 4 709 261 0 0 0 chr5 16344483 16344512 -136192747 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 709 350 311 103 78 chr5 16344839 16345198 -136192061 + MLT1B LTR MaLR 6 373 -17 4 709 1042 311 89 35 chr5 16345553 16346046 -136191213 + Charlie11 DNA MER1_type 996 1515 -681 4 709 227 276 44 0 chr5 16346240 16346321 -136190938 + MIR SINE MIR 47 138 -130 4 709 441 290 86 96 chr5 16346441 16346846 -136190413 + Charlie11 DNA MER1_type 1781 2181 -15 4 709 535 126 39 0 chr5 16347446 16347573 -136189686 + (TG)n Simple_repeat Simple_repeat 1 132 0 4 709 676 310 68 25 chr5 16347587 16347865 -136189394 - B4 SINE B4 -2 290 1 4 709 785 337 118 33 chr5 16349276 16349880 -136187379 - Lx8 LINE L1 -54 7419 6765 4 709 605 313 68 22 chr5 16350317 16350686 -136186573 + L1MC LINE L1 3658 4043 -2103 4 709 839 256 87 20 chr5 16350765 16351260 -136185999 + L1MC LINE L1 4181 4709 -1437 4 709 378 288 0 59 chr5 16351274 16351392 -136185867 + PB1D7 SINE Alu 1 111 -9 4 709 604 312 62 69 chr5 16351523 16352340 -136184919 + L1MC LINE L1 4962 5770 -563 4 709 575 60 24 0 chr5 16353016 16353099 -136184160 + (CATA)n Simple_repeat Simple_repeat 3 87 0 4 709 227 31 31 0 chr5 16353625 16353657 -136183602 + (CAA)n Simple_repeat Simple_repeat 2 34 0 4 709 244 226 15 46 chr5 16353665 16353730 -136183529 + GA-rich Low_complexity Low_complexity 2 64 0 4 709 3830 170 52 11 chr5 16353800 16354545 -136182714 - Lx3C LINE L1 -2 6974 6199 4 709 2319 175 18 22 chr5 16354545 16354996 -136182263 + Lx3C LINE L1 5743 6191 -785 4 709 209 33 0 32 chr5 16355112 16355143 -136182116 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 4 709 1107 23 0 0 chr5 16355143 16355273 -136181986 + (TG)n Simple_repeat Simple_repeat 1 130 0 4 709 522 284 48 28 chr5 16355327 16355472 -136181787 - RSINE1 SINE B4 -16 149 2 4 709 305 337 104 75 chr5 16356021 16356300 -136180959 - MLT2B3 LTR ERVL -247 307 21 4 709 360 0 0 0 chr5 16357555 16357595 -136179664 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 709 597 14 0 0 chr5 16357595 16357665 -136179594 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 709 308 328 16 49 chr5 16358128 16358250 -136179009 - RSINE1 SINE B4 -47 118 1 4 709 422 272 100 12 chr5 16358286 16358446 -136178813 - MTE2a LTR MaLR 0 379 206 4 709 384 22 0 0 chr5 16358584 16358629 -136178630 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 709 21 71 0 0 chr5 16358656 16358698 -136178561 + AT_rich Low_complexity Low_complexity 1 42 0 4 709 2032 108 6 22 chr5 16358811 16359077 -136178182 + Lx LINE L1 6342 6606 -48 4 709 3155 31 36 8 chr5 16359077 16359462 -136177797 - MTA_Mm LTR MaLR 0 396 1 4 709 2032 108 6 22 chr5 16359462 16359506 -136177753 + Lx LINE L1 6607 6647 -7 4 709 471 202 0 0 chr5 16359727 16359846 -136177413 + (CA)n Simple_repeat Simple_repeat 2 120 0 4 709 565 267 56 22 chr5 16359852 16360032 -136177227 - Lx7 LINE L1 -383 7313 7128 4 709 605 181 28 21 chr5 16360032 16360173 -136177086 + L1_Mur3 LINE L1 2320 2461 -3419 4 709 688 329 28 19 chr5 16360291 16360505 -136176754 - B3 SINE B2 0 216 1 4 709 363 44 0 0 chr5 16361884 16361929 -136175330 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 709 304 301 0 0 chr5 16363245 16363318 -136173941 + B1F1 SINE Alu 68 140 -9 4 709 428 0 19 0 chr5 16363322 16363374 -136173885 + (TAA)n Simple_repeat Simple_repeat 2 54 0 4 709 2276 53 0 0 chr5 16363462 16363745 -136173514 - L1Md_A LINE L1 0 6582 6300 4 709 2927 29 0 0 chr5 16363745 16364085 -136173174 + L1Md_T LINE L1 5919 6258 -324 4 709 482 289 15 62 chr5 16364085 16364284 -136172975 - MLT1A0 LTR MaLR -203 205 15 4 709 21 36 0 0 chr5 16364427 16364455 -136172804 + AT_rich Low_complexity Low_complexity 1 28 0 4 709 22 35 0 0 chr5 16366127 16366156 -136171103 + AT_rich Low_complexity Low_complexity 1 29 0 4 709 279 350 0 10 chr5 16366609 16366710 -136170549 - Charlie4z DNA MER1_type -19 148 49 4 709 21 36 0 0 chr5 16368744 16368772 -136168487 + AT_rich Low_complexity Low_complexity 1 28 0 5 709 322 268 30 20 chr5 16368858 16368957 -136168302 - PB1D10 SINE Alu -3 114 15 5 709 317 158 39 13 chr5 16369739 16369816 -136167443 + Lx9 LINE L1 7566 7644 0 5 709 976 68 53 0 chr5 16369818 16369950 -136167309 + B1_Mm SINE Alu 1 139 -8 5 709 210 105 0 0 chr5 16369950 16369988 -136167271 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 5 709 1393 173 157 38 chr5 16370148 16370309 -136166950 + ORR1C2 LTR MaLR 1 189 -195 5 709 699 12 0 0 chr5 16370309 16370389 -136166870 + (TC)n Simple_repeat Simple_repeat 2 81 0 5 709 1393 173 157 38 chr5 16370389 16370570 -136166689 + ORR1C2 LTR MaLR 190 383 -1 5 709 4070 48 0 2 chr5 16370774 16371271 -136165988 - L1_Mus1 LINE L1 0 6567 6072 5 709 594 118 0 0 chr5 16371320 16371413 -136165846 + (TC)n Simple_repeat Simple_repeat 2 94 0 5 709 582 282 60 6 chr5 16371416 16371598 -136165661 - B3 SINE B2 0 216 25 5 709 224 289 125 38 chr5 16372043 16372276 -136164983 + MIRb SINE MIR 17 276 0 5 709 26 30 0 0 chr5 16372377 16372410 -136164849 + AT_rich Low_complexity Low_complexity 1 33 0 5 709 231 267 0 62 chr5 16373287 16373351 -136163908 - MIRc SINE MIR -152 116 57 5 709 180 270 80 13 chr5 16374117 16374192 -136163067 + MIRc SINE MIR 175 254 -14 5 709 363 73 0 0 chr5 16374957 16375012 -136162247 + (TAG)n Simple_repeat Simple_repeat 1 55 0 5 709 397 283 0 0 chr5 16375017 16375137 -136162122 - PB1 SINE Alu -7 120 1 5 709 824 300 67 35 chr5 16377038 16377383 -136159876 + Lx8 LINE L1 7045 7400 -73 5 709 234 150 0 0 chr5 16377613 16377653 -136159606 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 5 709 217 182 165 25 chr5 16377708 16377787 -136159472 - L2a LINE L2 -6 3420 3331 5 709 379 299 94 82 chr5 16378771 16379004 -136158255 - Lx8 LINE L1 -11 7462 7227 5 709 472 340 125 16 chr5 16379159 16379407 -136157852 - Lx8 LINE L1 -254 7219 6945 5 709 258 32 0 0 chr5 16380671 16380702 -136156557 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 709 210 208 0 0 chr5 16380717 16380770 -136156489 + (TATG)n Simple_repeat Simple_repeat 4 56 0 5 709 524 392 82 26 chr5 16380773 16381040 -136156219 - B4A SINE B4 -2 290 9 5 709 449 361 28 7 chr5 16381471 16381616 -136155643 + B3A SINE B2 19 166 -32 5 709 405 0 0 0 chr5 16381617 16381662 -136155597 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 709 255 23 22 43 chr5 16382001 16382021 -136155238 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 709 642 60 0 0 chr5 16382021 16382104 -136155155 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 709 255 23 22 43 chr5 16382104 16382129 -136155130 + (TA)n Simple_repeat Simple_repeat 2 26 0 5 709 21 0 0 0 chr5 16382432 16382453 -136154806 + AT_rich Low_complexity Low_complexity 1 21 0 5 709 3454 25 2 0 chr5 16383228 16383623 -136153636 - MTA_Mm LTR MaLR 0 396 1 5 88 5046 124 30 26 chr5 16383879 16384764 -136152495 + RMER17D LTR ERVK 1 889 0 5 710 244 365 123 6 chr5 16386955 16387134 -136150125 - MIR SINE MIR -36 226 27 5 710 324 0 0 0 chr5 16387196 16387232 -136150027 + (T)n Simple_repeat Simple_repeat 1 36 0 5 710 1012 113 28 0 chr5 16387235 16387377 -136149882 - B1_Mus2 SINE Alu 0 147 2 5 710 312 239 0 0 chr5 16387453 16387520 -136149739 - RLTR40 LTR ERVK -744 73 7 5 710 740 264 29 9 chr5 16388262 16388472 -136148787 - B3 SINE B2 -1 215 2 5 710 228 208 0 0 chr5 16388694 16388747 -136148512 - Lx7 LINE L1 -29 7667 7615 5 710 557 61 12 0 chr5 16388842 16388924 -136148335 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 710 1001 199 0 40 chr5 16388935 16389134 -136148125 + Lx7 LINE L1 6670 6860 -836 5 710 715 245 86 0 chr5 16390744 16390907 -136146352 - MTD LTR MaLR -106 313 137 5 710 703 188 78 50 chr5 16390926 16391105 -136146154 + B2_Mm2 SINE B2 6 189 -6 5 710 23607 170 30 13 chr5 16391412 16397419 -136139840 + Lx LINE L1 553 6654 0 5 710 1842 33 103 4 chr5 16397426 16397668 -136139591 + L1Md_F3 LINE L1 6319 6584 0 5 710 222 37 0 0 chr5 16398355 16398382 -136138877 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 710 873 280 99 12 chr5 16398489 16398995 -136138264 + L1M3 LINE L1 3187 3736 -2404 5 710 424 369 56 41 chr5 16398995 16399261 -136137998 + B4A SINE B4 2 271 -21 5 710 261 0 0 0 chr5 16399288 16399317 -136137942 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 710 441 306 116 12 chr5 16399321 16399734 -136137525 + L1M3 LINE L1 3761 4216 -1924 5 710 21 36 0 0 chr5 16400050 16400078 -136137181 + AT_rich Low_complexity Low_complexity 1 28 0 5 710 366 23 0 0 chr5 16400233 16400276 -136136983 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 710 265 229 84 8 chr5 16400375 16400494 -136136765 - Lx9 LINE L1 -7 7637 7510 5 710 1819 152 68 9 chr5 16400597 16400936 -136136323 + Lx9 LINE L1 6919 7277 -367 5 710 187 31 62 0 chr5 16401072 16401104 -136136155 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 710 998 116 0 33 chr5 16401348 16401500 -136135759 - B1_Mus1 SINE Alu 0 148 2 5 710 1703 182 85 3 chr5 16401869 16402221 -136135038 + RLTR14 LTR ERV1 2 382 0 5 710 19725 150 5 47 chr5 16402389 16403333 -136133926 + L1VL4 LINE L1 356 1264 -4622 5 710 1090 90 0 0 chr5 16403333 16403469 -136133790 + B1_Mm SINE Alu 2 137 -10 5 710 297 0 0 0 chr5 16403469 16403502 -136133757 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 710 19725 162 27 24 chr5 16403510 16405071 -136132188 + L1VL4 LINE L1 1265 2841 -3045 5 710 1126 207 116 44 chr5 16405071 16405434 -136131825 + RLTR9C LTR ERVK 5 393 0 5 710 19725 162 27 24 chr5 16405434 16407715 -136129544 + L1VL4 LINE L1 2842 5128 -758 5 710 6955 97 42 0 chr5 16407722 16408720 -136128539 + L1_Mus4 LINE L1 5594 6633 -3 5 710 35376 36 1 1 chr5 16409233 16415303 -136121956 + L1Md_T LINE L1 1 5589 -297 5 710 8913 5 3 0 chr5 16415303 16416296 -136120963 + L1Md_T LINE L1 5590 6585 0 5 710 367 303 110 34 chr5 16417478 16417714 -136119545 + L1MB3 LINE L1 5742 5995 -188 5 710 757 161 13 0 chr5 16417969 16418118 -136119141 + CT-rich Low_complexity Low_complexity 1 151 0 5 710 1991 182 3 34 chr5 16418118 16418505 -136118754 - Lx4A LINE L1 -1 7057 6683 5 710 923 216 60 0 chr5 16418948 16419147 -136118112 - Lx4A LINE L1 -346 6712 6502 5 710 2119 152 88 11 chr5 16419161 16419614 -136117645 - L1_Mur2 LINE L1 -4155 1722 1235 5 710 35087 85 3 9 chr5 16419592 16426701 -136110558 - L1Md_F2 LINE L1 0 6582 190 5 710 182 107 53 18 chr5 16426863 16426920 -136110339 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 5 710 289 153 28 0 chr5 16427048 16427120 -136110139 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 710 330 341 88 35 chr5 16427514 16427775 -136109484 + L1M4c LINE L1 1383 1657 -4727 5 710 268 315 31 0 chr5 16427782 16427912 -136109347 + L1_Rod LINE L1 5714 5847 0 5 710 539 318 50 5 chr5 16429044 16429243 -136108016 - B3 SINE B2 -6 210 3 5 710 25 0 0 0 chr5 16429271 16429296 -136107963 + AT_rich Low_complexity Low_complexity 1 25 0 5 710 28778 129 22 36 chr5 16429761 16436151 -136101108 - L1_Mus2 LINE L1 0 6566 272 5 710 582 117 0 26 chr5 16436286 16436400 -136100859 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 710 790 349 140 7 chr5 16436563 16436976 -136100283 + Tigger7 DNA MER2_type 11 478 -2013 5 710 315 0 0 0 chr5 16437196 16437231 -136100028 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 710 207 0 0 0 chr5 16437231 16437253 -136100006 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 710 218 296 0 0 chr5 16438178 16438222 -136099037 - B1F1 SINE Alu -96 53 10 5 710 3794 228 66 41 chr5 16438578 16439564 -136097695 + RLTR25B LTR ERVK 15 1025 -3 5 710 1854 234 51 3 chr5 16439566 16439955 -136097304 - Lx5 LINE L1 -39 7011 6604 5 710 1654 131 121 148 chr5 16439956 16440387 -136096872 - RLTR23 LTR ERV1 0 430 12 5 710 2306 246 45 11 chr5 16440390 16440940 -136096319 - Lx5 LINE L1 -437 6613 6045 5 710 1104 189 20 24 chr5 16441017 16441267 -136095992 - RLTR16 LTR ERVK -13 492 244 5 710 1894 243 35 55 chr5 16441304 16441817 -136095442 + RMER20A LTR ERVK 14 516 0 5 710 7648 24 14 0 chr5 16442341 16443245 -136094014 + L1Md_F3 LINE L1 5664 6580 -4 5 710 803 341 72 19 chr5 16444032 16444465 -136092794 - MER31A LTR ERV1 -7 478 23 5 710 2861 209 125 42 chr5 16444505 16445340 -136091919 - RMER13B LTR ERVK -4 904 1 5 710 335 297 35 35 chr5 16446531 16446646 -136090613 - PB1 SINE Alu 0 127 13 5 710 35396 34 0 0 chr5 16446686 16452168 -136085091 + L1Md_T LINE L1 12 5589 -297 5 710 9005 4 0 0 chr5 16452168 16453164 -136084095 + L1Md_T LINE L1 5590 6585 0 5 710 266 289 63 51 chr5 16453604 16453779 -136083480 + RLTR42-int LTR ERVK 4257 4433 -1089 5 710 2373 203 52 75 chr5 16455996 16456331 -136080928 - RLTR20B3 LTR ERVK 0 577 239 5 710 912 19 0 0 chr5 16456331 16456437 -136080822 + (TTC)n Simple_repeat Simple_repeat 3 108 0 5 710 2373 203 52 75 chr5 16456437 16456691 -136080568 - RLTR20B3 LTR ERVK -339 238 1 5 710 22 70 0 0 chr5 16456756 16456799 -136080460 + AT_rich Low_complexity Low_complexity 1 43 0 5 710 188 35 35 0 chr5 16456971 16457000 -136080259 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 710 948 328 44 19 chr5 16457033 16457515 -136079744 - Lx9 LINE L1 -215 7429 6936 5 710 327 306 101 15 chr5 16457549 16457748 -136079511 - L1MC1 LINE L1 -92 6241 6026 5 710 300 339 24 6 chr5 16457843 16458012 -136079247 - L1MC1 LINE L1 -485 5848 5677 5 710 881 293 31 39 chr5 16458149 16458635 -136078624 + L1_Mur3 LINE L1 2456 2937 -2943 5 710 220 286 73 73 chr5 16460404 16460540 -136076719 - L2a LINE L2 -5 3421 3286 5 710 189 0 0 0 chr5 16460742 16460763 -136076496 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 710 249 380 33 52 chr5 16460776 16460987 -136076272 - RMER15 LTR ERVL -17 558 352 5 710 260 435 27 11 chr5 16461312 16461575 -136075684 - L2 LINE L2 -519 2900 2634 5 710 25 31 0 0 chr5 16461824 16461856 -136075403 + AT_rich Low_complexity Low_complexity 1 32 0 5 710 294 29 0 0 chr5 16463602 16463637 -136073622 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 710 24 32 0 0 chr5 16463864 16463895 -136073364 + AT_rich Low_complexity Low_complexity 1 31 0 6 710 182 105 26 0 chr5 16464040 16464078 -136073181 + (CAA)n Simple_repeat Simple_repeat 1 39 0 6 710 1781 227 72 62 chr5 16464354 16464871 -136072388 + RLTR11A LTR ERVK 1 522 -6 6 710 2157 305 62 20 chr5 16466292 16467084 -136070175 + Lx8 LINE L1 6638 7462 -11 6 710 30 59 0 0 chr5 16467087 16467138 -136070121 + AT_rich Low_complexity Low_complexity 1 51 0 6 710 234 0 0 0 chr5 16467583 16467609 -136069650 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 710 294 355 45 27 chr5 16467875 16468095 -136069164 - MLT1A0 LTR MaLR 0 365 142 6 710 21 36 0 0 chr5 16468203 16468231 -136069028 + AT_rich Low_complexity Low_complexity 1 28 0 6 710 1481 195 45 15 chr5 16468333 16468666 -136068593 - RMER6C LTR ERVK -3 687 345 6 710 267 213 0 0 chr5 16468708 16468755 -136068504 - MT2B LTR ERVL -374 227 181 6 710 537 141 53 21 chr5 16468739 16468833 -136068426 - RMER6C LTR ERVK -579 111 15 6 710 549 0 0 0 chr5 16468857 16468918 -136068341 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 710 900 334 106 22 chr5 16468936 16469444 -136067815 + Lx9 LINE L1 6357 6907 -737 6 710 16725 15 0 0 chr5 16469462 16472110 -136065149 - L1Md_T LINE L1 0 6582 3935 6 710 945 320 21 43 chr5 16472115 16472552 -136064707 + Lx9 LINE L1 6899 7325 -319 6 710 476 250 7 22 chr5 16472562 16472701 -136064558 + L1_Rod LINE L1 4878 5014 -833 6 710 458 190 32 32 chr5 16472716 16472841 -136064418 + L1_Mur3 LINE L1 4079 4203 -1677 6 710 247 325 81 73 chr5 16472964 16473100 -136064159 - MLT1A0 LTR MaLR -229 145 9 6 710 195 104 41 20 chr5 16474041 16474090 -136063169 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 710 25 0 0 0 chr5 16474122 16474147 -136063112 + AT_rich Low_complexity Low_complexity 1 25 0 6 710 198 103 0 0 chr5 16474156 16474185 -136063074 + (TATG)n Simple_repeat Simple_repeat 3 31 0 6 710 4150 170 76 26 chr5 16474424 16475283 -136061976 - RLTR13D6 LTR ERVK 0 902 1 6 710 207 100 0 0 chr5 16475292 16475322 -136061937 + (TATG)n Simple_repeat Simple_repeat 2 31 0 6 710 435 224 144 39 chr5 16475464 16475617 -136061642 + MER96B DNA hAT 105 273 -144 6 710 354 366 60 40 chr5 16475955 16476024 -136061235 - B3A SINE B2 -8 208 147 6 710 360 0 0 0 chr5 16476024 16476064 -136061195 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 710 354 370 84 28 chr5 16476064 16476193 -136061066 - B3A SINE B2 -51 147 6 6 710 197 65 32 0 chr5 16476382 16476413 -136060846 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 6 710 312 363 64 15 chr5 16476938 16477142 -136060117 - Lx8 LINE L1 -54 7419 7206 6 710 281 360 6 36 chr5 16477155 16477322 -136059937 + Lx8 LINE L1 7041 7202 -271 6 710 212 118 78 0 chr5 16477414 16477465 -136059794 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 710 1135 275 117 35 chr5 16477466 16477809 -136059450 + MTD LTR MaLR 41 411 -8 6 710 684 307 94 47 chr5 16478180 16478498 -136058761 + MLT1C LTR MaLR 3 335 -132 6 710 519 271 0 0 chr5 16478889 16479007 -136058252 + B3 SINE B2 3 120 -96 6 710 216 290 14 14 chr5 16479309 16479379 -136057880 - B3 SINE B2 -108 108 39 6 710 249 350 59 10 chr5 16480919 16481020 -136056239 + MLT1A1 LTR MaLR 9 114 -294 6 710 413 48 32 0 chr5 16481346 16481409 -136055850 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 6 710 3863 51 6 0 chr5 16482236 16482708 -136054551 + MT2C_Mm LTR ERVL 1 475 0 6 710 7285 90 48 2 chr5 16482710 16483760 -136053499 + MTA_Mm-int LTR MaLR 1 1098 0 6 710 3013 64 13 5 chr5 16483760 16484153 -136053106 + MTA_Mm LTR MaLR 1 396 0 6 710 267 151 0 54 chr5 16484184 16484240 -136053019 - L1_Mur2 LINE L1 -1099 4787 4735 6 710 8487 159 107 12 chr5 16484277 16486120 -136051139 - L1_Mur2 LINE L1 -1147 4730 2712 6 710 549 164 0 1 chr5 16486115 16486215 -136051044 - L1_Mur2 LINE L1 -3438 2448 2341 6 710 262 306 0 0 chr5 16486216 16486288 -136050971 + CT-rich Low_complexity Low_complexity 1 72 0 6 710 1121 64 110 12 chr5 16487415 16487588 -136049671 + B2_Mm2 SINE B2 1 190 -5 6 710 906 95 24 0 chr5 16487593 16487719 -136049540 + B1_Mm SINE Alu 14 142 -5 6 710 925 85 0 0 chr5 16487719 16487864 -136049395 + L1Md_F2 LINE L1 5918 6063 -519 6 710 14102 97 41 6 chr5 16487863 16490397 -136046862 - L1Md_F2 LINE L1 -607 5975 2987 6 710 336 264 158 10 chr5 16491495 16491603 -136045656 - PB1D7 SINE Alu -13 114 7 6 710 219 69 0 0 chr5 16491843 16491872 -136045387 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 710 1528 57 0 9 chr5 16491886 16492098 -136045161 - L1Md_F3 LINE L1 0 6584 6375 6 710 319 341 78 0 chr5 16492455 16492476 -136044783 + B1F SINE Alu 1 139 -10 6 710 385 287 37 0 chr5 16492476 16492584 -136044675 + ID_B1 SINE B4 103 214 -10 6 710 1769 228 8 14 chr5 16493694 16494059 -136043200 - Lx5 LINE L1 -3 7047 6685 6 710 1090 290 37 15 chr5 16495141 16495551 -136041708 + MTD LTR MaLR 1 419 0 6 710 346 339 44 33 chr5 16495703 16495886 -136041373 - MER57E1 LTR ERV1 0 372 188 6 710 328 335 136 55 chr5 16496135 16496334 -136040925 - ORR1E LTR MaLR -144 215 1 6 710 2187 177 60 70 chr5 16497386 16497915 -136039344 + RLTR28 LTR ERVL 1 524 0 6 710 24 0 0 0 chr5 16498014 16498038 -136039221 + AT_rich Low_complexity Low_complexity 1 24 0 6 710 297 0 0 0 chr5 16498148 16498181 -136039078 + (A)n Simple_repeat Simple_repeat 1 33 0 6 710 27 92 0 0 chr5 16499172 16499248 -136038011 + AT_rich Low_complexity Low_complexity 1 76 0 6 710 368 332 129 42 chr5 16501205 16501501 -136035758 + MLT1F-int LTR MaLR 1106 1431 -58 1 710 4309 66 11 12 chr5 16501501 16502066 -136035193 + LTRIS2 LTR ERV1 1 564 0 2 710 368 332 129 42 chr5 16502066 16502102 -136035157 + MLT1F-int LTR MaLR 1432 1467 -22 1 710 645 293 53 18 chr5 16502860 16503030 -136034229 - ID_B1 SINE B4 -43 181 6 3 710 807 83 53 0 chr5 16506443 16506612 -136030647 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 4 710 322 275 139 16 chr5 16506848 16506970 -136030289 + RSINE1 SINE B4 25 161 -4 5 710 8375 155 30 15 chr5 16507697 16507863 -136029396 - Lx4A LINE L1 -9 7049 6865 6 710 3733 186 56 130 chr5 16507863 16508898 -136028361 - RMER17B LTR ERVK 0 958 1 7 710 8375 155 30 15 chr5 16508898 16510172 -136027087 - Lx4A LINE L1 -194 6864 5587 6 710 185 270 0 31 chr5 16510725 16510790 -136026469 - L3 LINE CR1 -3110 1379 1317 8 710 351 0 0 0 chr5 16511653 16511692 -136025567 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 710 487 256 143 0 chr5 16511692 16511825 -136025434 - B3A SINE B2 -42 156 5 1 710 351 0 0 0 chr5 16512663 16512702 -136024557 + (T)n Simple_repeat Simple_repeat 1 39 0 1 710 558 333 137 31 chr5 16513751 16514110 -136023149 - RMER15 LTR ERVL 0 575 179 1 88 3731 152 9 20 chr5 16514272 16515222 -136022037 + Lx2A1 LINE L1 5237 6186 -822 1 711 36 70 0 0 chr5 16515314 16515385 -136021874 + AT_rich Low_complexity Low_complexity 1 71 0 1 711 320 272 78 0 chr5 16515646 16515749 -136021510 - L1M5 LINE L1 -2626 3520 3410 1 711 369 0 0 0 chr5 16516110 16516151 -136021108 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 711 4811 188 9 30 chr5 16516740 16517952 -136019307 + Lx2 LINE L1 5876 7007 -1 1 711 714 220 7 0 chr5 16518073 16518214 -136019045 + B1_Mur1 SINE Alu 1 142 -7 1 711 5054 252 51 56 chr5 16518334 16520120 -136017139 + Lx9 LINE L1 5674 7643 -1 1 711 468 256 86 50 chr5 16520157 16520297 -136016962 + B1_Mur1 SINE Alu 5 149 0 2 711 241 280 6 0 chr5 16520924 16521002 -136016257 - B1F SINE Alu -8 141 31 2 711 1389 91 0 0 chr5 16521011 16521354 -136015905 + (TCC)n Simple_repeat Simple_repeat 1 343 0 2 711 243 0 0 0 chr5 16521354 16521381 -136015878 + (TTC)n Simple_repeat Simple_repeat 1 27 0 2 711 3784 137 61 19 chr5 16521382 16522051 -136015208 - Lx3C LINE L1 -2 6974 6278 2 711 1731 103 42 0 chr5 16522052 16522313 -136014946 + Lx3B LINE L1 5754 6025 -948 2 711 26 50 0 0 chr5 16522564 16522604 -136014655 + AT_rich Low_complexity Low_complexity 1 40 0 2 711 21 0 0 0 chr5 16522667 16522688 -136014571 + AT_rich Low_complexity Low_complexity 1 21 0 2 711 24 67 0 0 chr5 16523647 16523692 -136013567 + AT_rich Low_complexity Low_complexity 1 45 0 2 711 306 0 0 0 chr5 16523950 16523984 -136013275 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2 711 2142 319 86 42 chr5 16524324 16524555 -136012704 + Lx9 LINE L1 6117 6397 -1247 3 711 266 0 29 0 chr5 16524555 16524589 -136012670 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 711 2142 319 86 42 chr5 16524589 16524691 -136012568 + Lx9 LINE L1 6398 6490 -1154 3 711 3559 176 74 5 chr5 16524691 16525338 -136011921 - RLTR17 LTR ERVK 0 692 1 3 711 2142 319 86 42 chr5 16525338 16526444 -136010815 + Lx9 LINE L1 6491 7620 -24 3 711 445 328 75 97 chr5 16526807 16527178 -136010081 + ORR1D2 LTR MaLR 8 370 0 3 711 462 36 0 0 chr5 16527378 16527434 -136009825 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 711 415 179 0 36 chr5 16527869 16527979 -136009280 + L1Md_F2 LINE L1 6472 6577 -5 3 711 6802 53 16 0 chr5 16529385 16530250 -136007009 + L1Md_F2 LINE L1 5702 6580 -2 3 711 216 0 0 0 chr5 16530287 16530311 -136006948 + (A)n Simple_repeat Simple_repeat 1 24 0 3 711 450 0 0 0 chr5 16530524 16530574 -136006685 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 711 663 48 0 0 chr5 16530691 16530774 -136006485 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 3 711 1024 194 78 53 chr5 16531254 16531537 -136005722 + RLTR20C LTR ERVK 1 290 -244 4 711 426 160 252 46 chr5 16531541 16531605 -136005654 + RLTR20C LTR ERVK 421 491 -87 4 711 420 20 0 0 chr5 16531605 16531654 -136005605 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 711 426 160 252 46 chr5 16531654 16531720 -136005539 + RLTR20C LTR ERVK 492 578 0 4 711 24 77 0 0 chr5 16531750 16531802 -136005457 + AT_rich Low_complexity Low_complexity 1 52 0 4 711 609 305 142 25 chr5 16532408 16532774 -136004485 + Lx8 LINE L1 6261 6669 -804 4 711 27 29 0 0 chr5 16532863 16532897 -136004362 + AT_rich Low_complexity Low_complexity 1 34 0 4 711 342 67 0 0 chr5 16533025 16533070 -136004189 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 711 222 37 0 0 chr5 16533070 16533097 -136004162 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 711 2633 208 69 29 chr5 16533097 16533336 -136003923 - RMER6C LTR ERVK -10 680 424 4 711 189 74 0 0 chr5 16533336 16533363 -136003896 + (AACTG)n Simple_repeat Simple_repeat 1 27 0 4 711 2633 208 69 29 chr5 16533363 16533777 -136003482 - RMER6C LTR ERVK -267 423 1 4 711 2465 204 61 18 chr5 16533790 16534348 -136002911 - RMER6-int LTR ERVK -14 3163 2582 4 711 279 264 0 0 chr5 16534355 16534408 -136002851 - LSU-rRNA_Hsa rRNA rRNA -3206 1829 1777 4 711 289 340 29 10 chr5 16534609 16534713 -136002546 + PB1D7 SINE Alu 12 117 -3 5 711 38 22 0 0 chr5 16535545 16535590 -136001669 + AT_rich Low_complexity Low_complexity 1 45 0 5 711 21 0 0 0 chr5 16535892 16535913 -136001346 + AT_rich Low_complexity Low_complexity 1 21 0 5 711 234 372 0 20 chr5 16536106 16536257 -136001002 + GA-rich Low_complexity Low_complexity 2 149 0 5 711 1699 253 70 39 chr5 16536554 16537167 -136000092 - RCHARR1 DNA MER1_type 0 974 343 5 711 601 211 211 0 chr5 16538054 16538229 -135999030 - Lx3C LINE L1 -4 6972 6761 5 711 22 56 0 0 chr5 16538484 16538520 -135998739 + AT_rich Low_complexity Low_complexity 1 36 0 5 711 402 204 0 0 chr5 16538559 16538652 -135998607 + T-rich Low_complexity Low_complexity 1 93 0 5 711 37876 30 0 3 chr5 16538847 16545477 -135991782 - L1Md_T LINE L1 0 6585 1 5 711 669 311 23 0 chr5 16545481 16545700 -135991559 - ID_B1 SINE B4 0 224 1 5 711 258 323 86 0 chr5 16545774 16545867 -135991392 + RSINE1 SINE B4 54 154 -11 6 711 468 0 0 0 chr5 16547675 16547727 -135989532 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 711 438 79 0 0 chr5 16547781 16547844 -135989415 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 711 420 119 15 0 chr5 16548459 16548526 -135988733 - MTD LTR MaLR -8 411 344 6 711 342 280 100 0 chr5 16548525 16548625 -135988634 - MTD LTR MaLR -261 158 49 6 711 252 77 0 0 chr5 16548625 16548664 -135988595 + (T)n Simple_repeat Simple_repeat 1 39 0 6 711 37846 44 0 3 chr5 16548763 16555071 -135982188 - L1Md_T LINE L1 0 6585 199 6 711 190 276 17 0 chr5 16555115 16555173 -135982086 - L3 LINE CR1 -2472 2017 1959 6 711 22 0 0 0 chr5 16555476 16555498 -135981761 + AT_rich Low_complexity Low_complexity 1 22 0 6 711 881 290 26 0 chr5 16555581 16555774 -135981485 + B4 SINE B4 20 217 -75 6 711 235 261 14 28 chr5 16555828 16555899 -135981360 + (CATG)n Simple_repeat Simple_repeat 2 71 0 6 711 192 125 0 0 chr5 16557965 16557997 -135979262 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 7 711 2227 209 15 83 chr5 16557997 16558612 -135978647 - L1_Mur3 LINE L1 -933 4947 4375 7 711 2193 183 62 17 chr5 16558633 16559100 -135978159 + RLTR28 LTR ERVL 1 488 -36 7 711 683 256 99 99 chr5 16560223 16560557 -135976702 + MYSERV6-int LTR ERVK 7166 7499 -1460 7 711 261 171 23 136 chr5 16560745 16560833 -135976426 + RLTR19-int LTR ERVK 2946 3023 -3114 7 711 9990 88 6 4 chr5 16561045 16561199 -135976060 + Lx3_Mus LINE L1 4483 4637 -1249 7 711 243 0 0 0 chr5 16561199 16561226 -135976033 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 711 9990 95 14 8 chr5 16561226 16563023 -135974236 + Lx3_Mus LINE L1 4638 6433 -576 7 711 2934 41 5 65 chr5 16563023 16563436 -135973823 - RLTR10 LTR ERVK -2 388 1 7 711 8970 111 31 17 chr5 16563436 16563990 -135973269 + Lx3_Mus LINE L1 6434 7009 0 7 711 283 391 9 0 chr5 16564238 16564348 -135972911 + MER5A DNA MER1_type 1 111 -78 7 711 33790 91 9 8 chr5 16564369 16570760 -135966499 - L1Md_F2 LINE L1 -12 6570 175 7 711 3409 78 24 2 chr5 16570796 16571299 -135965960 - MusHAL1 LINE L1 -10 2702 2189 8 711 2211 271 66 75 chr5 16571272 16572192 -135965067 - L1_Mur3 LINE L1 -6775 953 42 7 711 236 311 91 36 chr5 16572600 16572710 -135964549 - PB1D10 SINE Alu -1 116 1 8 711 215 56 56 0 chr5 16574230 16574266 -135962993 + (CAGAGA)n Simple_repeat Simple_repeat 6 43 0 8 711 2801 152 150 23 chr5 16575093 16575705 -135961554 - RMER6C LTR ERVK 0 690 1 8 711 302 274 71 0 chr5 16575945 16576029 -135961230 - ORR1E LTR MaLR 0 379 290 8 711 490 272 104 0 chr5 16576109 16576234 -135961025 - ORR1E LTR MaLR -216 143 6 8 711 444 51 0 0 chr5 16576439 16576498 -135960761 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 711 233 319 31 41 chr5 16576689 16576787 -135960472 - B4A SINE B4 0 292 196 8 711 1810 136 9 62 chr5 16576792 16577130 -135960129 - ORR1A4 LTR MaLR -9 320 1 8 711 5468 185 86 33 chr5 16577138 16578638 -135958621 - ORR1A4-int LTR MaLR -191 1772 448 8 711 22 56 0 0 chr5 16579112 16579148 -135958111 + AT_rich Low_complexity Low_complexity 1 36 0 8 711 322 276 8 8 chr5 16579257 16579385 -135957874 - L1MC3 LINE L1 -8 7777 7650 8 711 292 256 0 44 chr5 16579643 16579733 -135957526 + MTEb LTR MaLR 294 379 0 9 711 355 311 117 30 chr5 16579734 16579999 -135957260 - L1MC3 LINE L1 -123 7662 7375 8 711 392 296 71 5 chr5 16580160 16580357 -135956902 - Lx9 LINE L1 -93 7551 7342 9 711 1447 192 41 4 chr5 16581220 16581487 -135955772 + RMER13B LTR ERVK 1 277 -631 9 711 27 0 0 0 chr5 16581731 16581758 -135955501 + AT_rich Low_complexity Low_complexity 1 27 0 9 711 34 55 0 0 chr5 16582694 16582749 -135954510 + AT_rich Low_complexity Low_complexity 1 55 0 9 711 309 51 0 0 chr5 16584195 16584234 -135953025 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 711 483 190 80 0 chr5 16584760 16584858 -135952401 - B1_Mus1 SINE Alu -5 143 38 9 711 4043 173 118 119 chr5 16584858 16585123 -135952136 - RLTR25A LTR ERVK 0 1103 897 9 711 423 0 0 0 chr5 16585123 16585170 -135952089 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 711 4043 173 118 119 chr5 16585170 16585576 -135951683 - RLTR25A LTR ERVK -207 896 408 9 711 2484 100 162 0 chr5 16585576 16586034 -135951225 - RLTR47_MM LTR ERV1 0 532 1 9 711 4043 173 118 119 chr5 16586034 16586457 -135950802 - RLTR25A LTR ERVK -696 407 9 9 711 226 194 0 0 chr5 16586466 16586502 -135950757 - B1_Mus1 SINE Alu -106 42 7 9 711 2203 148 5 13 chr5 16586907 16587289 -135949970 + Lx LINE L1 6270 6648 -6 1 711 252 0 0 0 chr5 16587438 16587466 -135949793 + (T)n Simple_repeat Simple_repeat 1 28 0 1 711 21 71 0 0 chr5 16588662 16588704 -135948555 + AT_rich Low_complexity Low_complexity 1 42 0 1 711 603 277 59 0 chr5 16589799 16590001 -135947258 - Lx6 LINE L1 -1330 6130 5917 1 711 606 170 0 0 chr5 16590006 16590106 -135947153 + Lx5 LINE L1 5655 5754 -1296 1 711 1103 202 12 44 chr5 16590102 16590351 -135946908 - Lx6 LINE L1 -217 5660 5420 1 711 5974 178 13 11 chr5 16592254 16593385 -135943874 - Lx2 LINE L1 -1 6996 5864 1 711 9815 107 12 39 chr5 16593385 16595764 -135941495 - L1VL4 LINE L1 -1273 2286 17 1 711 213 172 0 0 chr5 16595899 16595963 -135941296 + T-rich Low_complexity Low_complexity 1 64 0 1 711 572 186 0 0 chr5 16595965 16596062 -135941197 - Lx2B LINE L1 -360 6640 6544 1 711 510 312 7 35 chr5 16596064 16596207 -135941052 + ID_B1 SINE B4 86 224 0 1 711 200 100 25 0 chr5 16596231 16596271 -135940988 + (CAA)n Simple_repeat Simple_repeat 3 43 0 1 711 22 56 0 0 chr5 16596500 16596536 -135940723 + AT_rich Low_complexity Low_complexity 1 36 0 1 711 317 220 68 8 chr5 16596562 16596588 -135940671 + ORR1D1-int LTR MaLR 614 647 -862 1 711 931 77 10 0 chr5 16596588 16596725 -135940534 + B1_Mus2 SINE Alu 1 149 0 1 711 319 253 67 0 chr5 16596737 16596812 -135940447 - MTE2a LTR MaLR -87 292 213 1 711 31 58 0 0 chr5 16596942 16596994 -135940265 + AT_rich Low_complexity Low_complexity 1 52 0 1 711 252 211 0 0 chr5 16598044 16598115 -135939144 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 1 711 332 297 124 21 chr5 16599069 16599351 -135937908 + L1M3 LINE L1 3367 3677 -2469 1 711 374 157 43 0 chr5 16599427 16599497 -135937762 + ORR1D1 LTR MaLR 43 115 -259 1 711 380 370 92 39 chr5 16599493 16599774 -135937485 + MT2A LTR ERVL 153 448 -85 1 711 538 272 69 90 chr5 16599850 16600185 -135937074 + L1M4 LINE L1 5424 5751 -423 1 711 1191 130 5 5 chr5 16600597 16600790 -135936469 - B2_Mm2 SINE B2 -1 194 2 1 711 25 0 0 0 chr5 16600803 16600828 -135936431 + AT_rich Low_complexity Low_complexity 1 25 0 1 711 627 111 0 43 chr5 16600831 16600972 -135936287 + (TCTCTG)n Simple_repeat Simple_repeat 2 136 0 1 711 3688 147 0 2 chr5 16601530 16602135 -135935124 - L1_Mm LINE L1 -645 5238 4635 1 711 3655 99 2 2 chr5 16602135 16602639 -135934620 + L1_Mm LINE L1 5253 5756 -127 1 711 37949 43 0 3 chr5 16602648 16609147 -135928112 - L1Md_T LINE L1 0 6585 8 1 711 5395 99 90 16 chr5 16609147 16609977 -135927282 + L1_Mus3 LINE L1 5745 6636 -2 1 711 638 293 20 59 chr5 16610533 16610736 -135926523 - B3 SINE B2 -20 196 2 1 711 23 0 0 0 chr5 16611497 16611520 -135925739 + AT_rich Low_complexity Low_complexity 1 23 0 1 711 3322 41 2 0 chr5 16611689 16612083 -135925176 - MTA_Mm LTR MaLR 0 396 2 1 711 9540 17 0 4 chr5 16612086 16613185 -135924074 - MTA_Mm-int LTR MaLR -3 1095 1 1 711 3410 28 2 0 chr5 16613185 16613580 -135923679 - MTA_Mm LTR MaLR 0 396 1 1 711 932 160 8 8 chr5 16613700 16613955 -135923304 + GA-rich Low_complexity Low_complexity 1 255 0 1 711 499 333 96 18 chr5 16613959 16614188 -135923071 - B4A SINE B4 -44 248 2 1 711 249 68 26 64 chr5 16614289 16614367 -135922892 + T-rich Low_complexity Low_complexity 3 77 0 1 711 708 122 184 16 chr5 16614375 16614500 -135922759 - B1_Mus1 SINE Alu 0 148 3 1 711 716 272 176 20 chr5 16614994 16615238 -135922021 - MTD LTR MaLR -22 397 116 1 711 2925 121 1 1 chr5 16615254 16615701 -135921558 - Lx6 LINE L1 -1547 5913 5471 1 711 2811 55 33 0 chr5 16615701 16616064 -135921195 + L1_Mus1 LINE L1 6192 6566 -1 1 711 565 271 161 0 chr5 16616906 16617142 -135920117 + B4A SINE B4 1 274 -18 1 711 446 292 23 35 chr5 16619192 16619366 -135917893 - B3A SINE B2 0 198 27 1 711 391 366 72 22 chr5 16619576 16619897 -135917362 - Lx8 LINE L1 -214 7259 6923 1 711 305 350 146 33 chr5 16620173 16620536 -135916723 + MLT1F LTR MaLR 73 476 -72 1 711 571 26 26 0 chr5 16620673 16620750 -135916509 + (TC)n Simple_repeat Simple_repeat 1 79 0 1 711 263 303 112 54 chr5 16621225 16621501 -135915758 - L1M5 LINE L1 -321 5803 5512 1 711 780 273 70 113 chr5 16622652 16622729 -135914530 - MT2B2 LTR ERVL -1 583 531 1 711 219 114 0 0 chr5 16622729 16622764 -135914495 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 711 780 273 70 113 chr5 16622764 16623083 -135914176 - MT2B2 LTR ERVL -54 530 204 1 711 377 145 211 0 chr5 16623088 16623164 -135914095 - MT2B2 LTR ERVL -441 92 1 1 711 322 138 19 1 chr5 16623365 16623417 -135913842 - ORR1B1 LTR MaLR 0 367 316 1 711 834 53 60 15 chr5 16623417 16623550 -135913709 - L1Md_F2 LINE L1 -1 6581 6443 1 711 686 138 208 0 chr5 16623560 16623690 -135913569 + L1Md_F LINE L1 492 648 -5871 1 711 750 169 18 8 chr5 16623690 16623833 -135913426 - ORR1B1 LTR MaLR -30 364 218 1 711 1145 82 0 0 chr5 16623834 16623980 -135913279 - B1_Mm SINE Alu 0 147 2 1 711 556 84 0 0 chr5 16623997 16624068 -135913191 - tRNA-Val-GTY tRNA tRNA -5 71 1 1 711 1070 230 14 69 chr5 16624028 16624303 -135912956 - ORR1B1 LTR MaLR -134 260 1 1 711 27 62 0 0 chr5 16624531 16624579 -135912680 + AT_rich Low_complexity Low_complexity 1 48 0 1 711 2934 159 13 9 chr5 16624854 16625387 -135911872 + Lx2 LINE L1 4972 5506 -380 1 711 1478 95 39 9 chr5 16625389 16625622 -135911637 - RLTR27 LTR ERVK -2 307 68 1 711 8540 128 40 4 chr5 16625645 16627090 -135910169 + Lx2 LINE L1 5495 6996 -1 1 711 1041 97 0 27 chr5 16627187 16627336 -135909923 - B1_Mus2 SINE Alu -1 146 2 1 711 333 0 0 0 chr5 16627447 16627484 -135909775 + (TTA)n Simple_repeat Simple_repeat 1 37 0 1 711 1158 82 0 0 chr5 16627486 16627633 -135909626 - B1_Mm SINE Alu 0 147 1 1 711 27 73 0 0 chr5 16627926 16627981 -135909278 + AT_rich Low_complexity Low_complexity 1 55 0 1 711 562 310 145 19 chr5 16628379 16628794 -135908465 - L1MA9 LINE L1 -1 6311 5845 1 711 439 308 106 15 chr5 16628903 16629035 -135908224 + RSINE1 SINE B4 5 148 -17 1 711 855 293 81 39 chr5 16629185 16629519 -135907740 - ORR1D1 LTR MaLR 0 374 27 1 711 371 19 115 0 chr5 16629527 16629579 -135907680 - L1_Mus2 LINE L1 -582 5984 5927 1 711 1993 84 90 7 chr5 16629579 16629879 -135907380 + L1_Mus2 LINE L1 6241 6565 -1 1 711 362 178 64 43 chr5 16629879 16629920 -135907339 - Lx LINE L1 -728 5926 5889 1 711 386 318 101 58 chr5 16631860 16632117 -135905142 - RMER2 LTR ERV1 0 567 300 1 711 444 327 10 0 chr5 16632725 16632826 -135904433 - PB1D10 SINE Alu -13 104 3 1 711 453 348 73 40 chr5 16632905 16633180 -135904079 + B4A SINE B4 4 287 -5 1 711 717 122 0 0 chr5 16633737 16633852 -135903407 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 1 711 22 35 0 0 chr5 16633860 16633889 -135903370 + AT_rich Low_complexity Low_complexity 1 29 0 1 711 453 346 19 13 chr5 16633903 16634058 -135903201 - RSINE1 SINE B4 -9 156 1 1 711 623 333 87 20 chr5 16634691 16634945 -135902314 + B4A SINE B4 3 273 -19 1 711 237 307 56 22 chr5 16634912 16635002 -135902257 + B3 SINE B2 111 203 -13 1 711 237 65 0 0 chr5 16635530 16635561 -135901698 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1 711 455 362 116 24 chr5 16636079 16636571 -135900688 - L2 LINE L2 -1034 2385 1849 1 711 676 261 73 0 chr5 16636918 16637083 -135900176 + ID_B1 SINE B4 15 191 -33 1 711 262 284 79 11 chr5 16637003 16637092 -135900167 - YREP_Mm Unknown Unknown -1518 294 200 1 711 315 0 0 0 chr5 16637113 16637148 -135900111 + (CCA)n Simple_repeat Simple_repeat 1 35 0 1 711 189 0 0 0 chr5 16637148 16637169 -135900090 + (CAA)n Simple_repeat Simple_repeat 3 23 0 1 711 546 172 8 16 chr5 16637169 16637293 -135899966 + Lx9 LINE L1 7520 7642 -2 1 711 184 279 148 25 chr5 16638005 16638086 -135899173 - MIR SINE MIR -60 148 58 1 711 497 100 11 0 chr5 16638498 16638588 -135898671 + (GA)n Simple_repeat Simple_repeat 2 92 0 1 711 285 29 0 0 chr5 16639092 16639126 -135898133 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 711 249 153 27 14 chr5 16639152 16639225 -135898034 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 711 237 33 0 0 chr5 16639225 16639255 -135898004 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 711 211 254 197 0 chr5 16639759 16639881 -135897378 + L3 LINE CR1 3543 3688 -801 1 711 361 345 17 8 chr5 16640454 16640574 -135896685 + MER54A LTR ERVL 303 423 -478 1 711 1846 82 16 0 chr5 16642401 16642656 -135894603 + L1_Mus1 LINE L1 5933 6191 -376 1 711 1255 57 6 33 chr5 16642656 16642837 -135894422 + L1_Mus1 LINE L1 6392 6567 0 1 711 231 286 32 40 chr5 16643080 16643204 -135894055 + L1ME3 LINE L1 5872 5994 -168 1 711 342 0 0 0 chr5 16643320 16643358 -135893901 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 711 198 0 0 0 chr5 16643358 16643379 -135893880 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 711 363 260 20 0 chr5 16643908 16644058 -135893201 + CT-rich Low_complexity Low_complexity 4 156 0 1 711 530 183 9 0 chr5 16644074 16644189 -135893070 + (CA)n Simple_repeat Simple_repeat 1 116 0 1 711 24 32 0 0 chr5 16644454 16644485 -135892774 + AT_rich Low_complexity Low_complexity 1 31 0 1 711 1304 294 64 0 chr5 16645771 16646115 -135891144 - MTC LTR MaLR 0 421 56 1 712 502 357 57 27 chr5 16646554 16646920 -135890339 - Charlie1a DNA MER1_type -778 677 301 1 712 621 72 0 0 chr5 16646962 16647045 -135890214 + (TAG)n Simple_repeat Simple_repeat 1 83 0 1 712 23 0 0 0 chr5 16647352 16647375 -135889884 + AT_rich Low_complexity Low_complexity 1 23 0 1 712 433 306 72 5 chr5 16647509 16647716 -135889543 + HERVL40-int LTR ERVL 5277 5497 -33 1 712 351 65 0 0 chr5 16647776 16647822 -135889437 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 712 414 305 100 71 chr5 16648769 16649221 -135888038 - Lx8 LINE L1 -1 7472 7011 1 712 243 61 0 0 chr5 16649221 16649254 -135888005 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 1 712 410 283 60 17 chr5 16649254 16649440 -135887819 - Lx8 LINE L1 -518 7126 6788 1 712 1267 246 29 93 chr5 16649983 16650507 -135886752 + RMER13B LTR ERVK 410 899 -9 1 712 269 319 10 21 chr5 16650625 16650721 -135886538 - RMER15 LTR ERVL -156 419 325 2 712 559 256 110 6 chr5 16651717 16651890 -135885369 + L1MA9 LINE L1 4032 4222 -1921 2 712 355 346 43 50 chr5 16651918 16652149 -135885110 + L1MA9 LINE L1 4734 4969 -1174 2 712 4285 175 35 81 chr5 16652149 16653095 -135884164 - RMER19B LTR ERVK 0 902 1 2 712 355 346 43 50 chr5 16653095 16653143 -135884116 + L1MA9 LINE L1 4970 5011 -1132 2 712 1755 235 34 49 chr5 16653833 16653956 -135883303 + Lx9 LINE L1 6855 6974 -670 2 712 4773 139 65 46 chr5 16653956 16654896 -135882363 + RMER17B LTR ERVK 1 958 0 2 712 1755 235 34 49 chr5 16654896 16655238 -135882021 + Lx9 LINE L1 6975 7313 -331 2 712 314 257 86 26 chr5 16655290 16655406 -135881853 + Lx9 LINE L1 7302 7424 -220 2 712 324 238 50 0 chr5 16655407 16655508 -135881751 + Lx9 LINE L1 7539 7644 0 2 712 348 303 262 41 chr5 16655674 16656141 -135881118 + L1MA9 LINE L1 5333 5902 -410 2 712 26 74 0 0 chr5 16656524 16656578 -135880681 + AT_rich Low_complexity Low_complexity 1 54 0 2 712 391 298 7 58 chr5 16656937 16657076 -135880183 + Lx8 LINE L1 7198 7329 -144 2 712 477 186 98 0 chr5 16657214 16657316 -135879943 - PB1D9 SINE Alu 0 120 9 2 712 220 293 12 0 chr5 16657488 16657570 -135879689 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 712 21 36 0 0 chr5 16658277 16658305 -135878954 + AT_rich Low_complexity Low_complexity 1 28 0 2 712 22 56 0 0 chr5 16658849 16658885 -135878374 + AT_rich Low_complexity Low_complexity 1 36 0 2 712 215 342 17 0 chr5 16659019 16659136 -135878123 - MIR SINE MIR -15 247 129 2 712 182 364 124 25 chr5 16660248 16660369 -135876890 + MIRb SINE MIR 63 195 -73 2 712 454 324 137 23 chr5 16660772 16661088 -135876171 - Lx6 LINE L1 -15 7445 7094 2 712 822 112 10 3 chr5 16661168 16661304 -135875955 + B1_Mus1 SINE Alu 14 149 0 2 712 25 31 0 0 chr5 16661480 16661512 -135875747 + AT_rich Low_complexity Low_complexity 1 32 0 2 712 237 220 0 0 chr5 16661648 16661698 -135875561 + L1M5 LINE L1 5569 5618 -555 2 712 2515 214 55 36 chr5 16661730 16662601 -135874658 - L1_Rod LINE L1 -4287 1560 659 2 712 255 288 136 18 chr5 16662604 16662890 -135874369 + Lx9 LINE L1 7325 7644 0 2 712 893 249 10 10 chr5 16663222 16663429 -135873830 - B3 SINE B2 -7 209 3 2 712 201 39 0 0 chr5 16665278 16665304 -135871955 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 712 8398 114 22 23 chr5 16665505 16667096 -135870163 + Lx LINE L1 1879 4627 -1256 2 712 186 43 0 0 chr5 16667096 16667119 -135870140 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 712 8398 154 9 9 chr5 16667119 16669144 -135868115 + Lx LINE L1 4628 6653 -1 2 712 2301 191 30 19 chr5 16669150 16669691 -135867568 - RLTR31_Mur LTR ERVK -6 555 1 2 712 303 307 152 7 chr5 16670300 16670451 -135866808 - Tigger9a DNA Tigger -10 722 550 2 712 459 0 0 0 chr5 16670881 16670932 -135866327 + (A)n Simple_repeat Simple_repeat 1 51 0 2 712 483 106 0 0 chr5 16671151 16671236 -135866023 + L1Md_F2 LINE L1 6498 6582 0 2 712 1413 191 36 7 chr5 16672424 16672725 -135864534 + Lx LINE L1 6340 6649 -5 2 712 250 109 22 0 chr5 16672729 16672775 -135864484 + L1_Mur3 LINE L1 4637 4683 -1197 2 712 189 121 0 0 chr5 16672802 16672835 -135864424 + (A)n Simple_repeat Simple_repeat 1 33 0 2 712 209 57 29 0 chr5 16673780 16673815 -135863444 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 712 875 247 137 40 chr5 16674122 16674262 -135862997 - L1_Mur3 LINE L1 -1441 4439 4286 2 712 468 0 0 0 chr5 16674262 16674314 -135862945 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 712 875 247 137 40 chr5 16674314 16674552 -135862707 - L1_Mur3 LINE L1 -1595 4285 4026 2 712 7921 147 38 10 chr5 16674546 16675455 -135861804 + Lx3C LINE L1 5390 6334 -642 2 712 3229 41 8 0 chr5 16675455 16675848 -135861411 - MTA_Mm LTR MaLR 0 396 1 2 712 7921 143 33 10 chr5 16675848 16676475 -135860784 + Lx3C LINE L1 6335 6968 -8 2 712 331 284 112 98 chr5 16676640 16676917 -135860342 + L1MC LINE L1 2213 2493 -3653 2 712 282 362 22 0 chr5 16677055 16677193 -135860066 + L1MC LINE L1 4613 4753 -1393 2 712 353 214 23 38 chr5 16677721 16677852 -135859407 - Lx7 LINE L1 -159 7537 7409 2 712 355 256 208 19 chr5 16678422 16678581 -135858678 - Tigger7 DNA MER2_type -46 2445 2257 2 712 430 377 34 29 chr5 16678723 16678961 -135858298 - Tigger7 DNA MER2_type -2252 239 1 2 712 23 0 0 0 chr5 16678972 16678995 -135858264 + AT_rich Low_complexity Low_complexity 1 23 0 2 712 2141 199 76 5 chr5 16679019 16679452 -135857807 + Lx7 LINE L1 6202 6665 -1031 2 712 315 0 0 0 chr5 16679454 16679489 -135857770 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 712 322 344 18 78 chr5 16679498 16679665 -135857594 - LTR40a LTR ERVL -335 184 28 2 712 1572 127 11 8 chr5 16679751 16680013 -135857246 - L1_Mus3 LINE L1 0 6638 6376 2 712 2675 60 211 0 chr5 16680013 16680411 -135856848 + L1_Mus3 LINE L1 5633 6114 -524 2 712 3126 241 92 40 chr5 16680422 16681394 -135855865 + Lx7 LINE L1 6670 7691 -5 2 712 42 57 0 0 chr5 16681489 16681559 -135855700 + AT_rich Low_complexity Low_complexity 1 70 0 2 712 583 362 60 0 chr5 16681598 16681830 -135855429 + B4A SINE B4 2 247 -45 2 712 405 0 0 0 chr5 16681871 16681916 -135855343 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 712 510 17 0 0 chr5 16681916 16681974 -135855285 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 712 187 29 0 79 chr5 16682308 16682346 -135854913 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 2 712 1202 295 104 5 chr5 16683342 16683747 -135853512 + Lx6 LINE L1 6987 7431 -29 2 712 315 0 0 0 chr5 16683747 16683782 -135853477 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 712 360 360 7 7 chr5 16683950 16684087 -135853172 - B4A SINE B4 -18 274 138 2 712 335 208 21 0 chr5 16684208 16684304 -135852955 + Lx9 LINE L1 7547 7644 0 2 712 444 290 70 85 chr5 16684349 16684402 -135852857 - B3A SINE B2 -1 197 156 2 712 420 37 0 0 chr5 16684402 16684456 -135852803 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 712 444 290 70 85 chr5 16684456 16684602 -135852657 - B3A SINE B2 -43 155 1 2 712 21 0 0 0 chr5 16684774 16684795 -135852464 + AT_rich Low_complexity Low_complexity 1 21 0 2 712 1048 194 116 59 chr5 16684835 16685223 -135852036 - RMER17C LTR ERVK 0 410 1 2 712 256 279 0 0 chr5 16685435 16685496 -135851763 + (CGA)n Simple_repeat Simple_repeat 2 62 0 2 712 24 32 0 0 chr5 16685804 16685835 -135851424 + AT_rich Low_complexity Low_complexity 1 31 0 2 712 385 333 69 82 chr5 16687505 16687824 -135849435 + B4 SINE B4 1 278 -14 2 712 312 102 0 0 chr5 16688929 16688978 -135848281 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 712 2760 125 29 11 chr5 16689129 16689574 -135847685 - Lx3C LINE L1 -144 5742 5290 2 712 7376 131 16 10 chr5 16689574 16690773 -135846486 + Lx3C LINE L1 5769 6974 -2 2 712 1697 263 88 63 chr5 16691482 16692269 -135844990 + L1_Mur3 LINE L1 536 1341 -6387 2 712 870 251 25 5 chr5 16692256 16692456 -135844803 - RMER1B Other Other -862 204 1 2 712 333 355 63 15 chr5 16692880 16693086 -135844173 + MER58A DNA MER1_type 3 218 -6 2 712 4683 164 8 25 chr5 16693417 16693837 -135843422 - Lx4A LINE L1 -624 6434 6018 2 712 1666 154 55 9 chr5 16693837 16694165 -135843094 - Lx LINE L1 -4 6650 6308 2 712 9043 145 30 19 chr5 16694165 16695908 -135841351 - Lx4A LINE L1 -1041 6017 4247 2 712 7156 138 37 4 chr5 16695903 16697193 -135840066 - Lx4A LINE L1 -2473 3404 2072 2 712 7136 75 4 0 chr5 16697175 16698115 -135839144 - L1_Mus2 LINE L1 0 6566 5623 2 712 681 197 29 0 chr5 16698144 16698281 -135838978 + B1_Mur3 SINE Alu 9 149 0 2 712 2179 287 42 34 chr5 16698551 16699257 -135838002 - Lx6 LINE L1 -57 7403 6692 2 712 1497 190 31 3 chr5 16699287 16699326 -135837933 + L1_Mur3 LINE L1 2955 2998 -2882 2 712 234 0 0 0 chr5 16699326 16699352 -135837907 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 712 1497 190 31 3 chr5 16699352 16699665 -135837594 + L1_Mur3 LINE L1 2999 3316 -2564 2 712 308 321 147 18 chr5 16700105 16700378 -135836881 - L1ME4a LINE L1 -238 5886 5579 2 712 304 353 145 32 chr5 16700539 16701104 -135836155 - Charlie1 DNA MER1_type -598 2183 1555 2 712 2698 221 11 14 chr5 16702119 16702820 -135834439 - MERVL_2A-int LTR ERVL -4487 1274 453 2 712 2008 205 78 59 chr5 16702825 16702874 -135834385 + RLTR20B2 LTR ERVK 1 53 -507 2 712 4669 127 65 34 chr5 16702874 16703675 -135833584 - Lx2 LINE L1 -1 6996 6171 2 712 2008 205 78 59 chr5 16703675 16704062 -135833197 + RLTR20B2 LTR ERVK 54 451 -109 2 712 486 33 0 0 chr5 16704062 16704122 -135833137 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 712 2008 205 78 59 chr5 16704122 16704213 -135833046 + RLTR20B2 LTR ERVK 452 538 -22 2 712 432 0 0 0 chr5 16705000 16705048 -135832211 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 2 712 3936 186 69 62 chr5 16705384 16706115 -135831144 + MYSERV16_I-int LTR ERVK 5 1358 -1484 2 712 1095 82 7 0 chr5 16706115 16706262 -135830997 - B1_Mus1 SINE Alu 0 148 1 2 712 3936 182 70 64 chr5 16706262 16706486 -135830773 + MYSERV16_I-int LTR ERVK 738 932 -1394 2 712 5774 176 64 2 chr5 16706492 16706610 -135830649 + MYSERV16_I-int LTR ERVK 1067 1199 -1127 2 712 563 27 14 0 chr5 16706610 16706683 -135830576 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 2 712 5774 176 64 2 chr5 16706683 16707751 -135829508 + MYSERV16_I-int LTR ERVK 1200 2325 -1 2 712 384 99 111 14 chr5 16707751 16707823 -135829436 + RLTR20B1 LTR ERVK 1 79 -481 2 712 1331 214 62 29 chr5 16707814 16708029 -135829230 + RLTR20B1 LTR ERVK 246 471 -92 2 712 351 0 0 0 chr5 16708029 16708068 -135829191 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 712 1331 214 62 29 chr5 16708068 16708160 -135829099 + RLTR20B1 LTR ERVK 472 563 0 2 712 2079 223 74 4 chr5 16708160 16708659 -135828600 - MERVL_2A-int LTR ERVL -5226 535 2 2 712 1150 274 56 58 chr5 16708662 16709204 -135828055 - MT2B LTR ERVL -2 599 5 2 712 24 0 0 0 chr5 16710400 16710424 -135826835 + AT_rich Low_complexity Low_complexity 1 24 0 2 712 411 347 16 0 chr5 16710756 16710880 -135826379 - RSINE1 SINE B4 -31 134 9 2 712 225 65 0 0 chr5 16711044 16711075 -135826184 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2 712 257 356 9 19 chr5 16712118 16712224 -135825035 - L2 LINE L2 -484 2935 2831 2 712 297 0 0 0 chr5 16712401 16712434 -135824825 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 712 1284 283 78 49 chr5 16712596 16713702 -135823557 - Lx8 LINE L1 -1127 6346 5170 2 712 28 29 0 0 chr5 16714443 16714478 -135822781 + AT_rich Low_complexity Low_complexity 1 35 0 2 712 261 348 72 0 chr5 16714657 16714795 -135822464 - L2 LINE L2 -1426 1993 1846 2 712 22 35 0 0 chr5 16716454 16716483 -135820776 + AT_rich Low_complexity Low_complexity 1 29 0 2 712 215 227 0 0 chr5 16717023 16717067 -135820192 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 712 253 273 0 0 chr5 16717681 16717736 -135819523 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 712 200 410 10 10 chr5 16718516 16718612 -135818647 + MER5A DNA MER1_type 7 102 -87 2 712 31674 5 0 0 chr5 16718723 16724084 -135813175 + L1Md_A LINE L1 225 5586 -297 2 712 9046 4 0 0 chr5 16724084 16725080 -135812179 + L1Md_A LINE L1 5587 6582 0 2 712 311 300 22 11 chr5 16725351 16725442 -135811817 - B1F SINE Alu -51 98 7 2 712 231 204 37 0 chr5 16726057 16726111 -135811148 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 712 22 0 0 0 chr5 16726624 16726646 -135810613 + AT_rich Low_complexity Low_complexity 1 22 0 2 712 338 319 79 9 chr5 16726698 16726812 -135810447 + B1F SINE Alu 22 143 -6 2 712 21 89 0 0 chr5 16727072 16727128 -135810131 + AT_rich Low_complexity Low_complexity 1 56 0 2 712 3375 101 11 4 chr5 16727563 16728101 -135809158 + L1_Mur1 LINE L1 4350 4891 -995 2 712 5946 133 30 7 chr5 16728103 16729087 -135808172 + Lx3A LINE L1 5966 6972 -9 3 712 22 0 0 0 chr5 16729088 16729110 -135808149 + AT_rich Low_complexity Low_complexity 1 22 0 3 712 30 68 0 33 chr5 16729124 16729215 -135808044 + AT_rich Low_complexity Low_complexity 1 88 0 3 712 483 18 0 0 chr5 16731567 16731623 -135805636 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 712 197 146 21 0 chr5 16731986 16732034 -135805225 + GA-rich Low_complexity Low_complexity 2 50 0 3 712 29620 91 20 4 chr5 16734092 16735062 -135802197 - L1_Mur1 LINE L1 -67 5819 4816 3 712 351 60 0 0 chr5 16735062 16735112 -135802147 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 712 29620 113 35 13 chr5 16735112 16739532 -135797727 - L1_Mur1 LINE L1 -1071 4815 38 3 712 1175 225 124 3 chr5 16740516 16740846 -135796413 - Lx3C LINE L1 -2 6974 6605 3 712 6933 169 49 45 chr5 16740846 16740905 -135796354 + L1_Mur1 LINE L1 2001 2072 -3814 3 712 194 62 31 0 chr5 16740905 16740937 -135796322 + (CAA)n Simple_repeat Simple_repeat 1 33 0 3 712 6933 169 49 45 chr5 16740937 16741885 -135795374 + L1_Mur1 LINE L1 2073 3011 -2875 3 712 1103 142 38 0 chr5 16741885 16742068 -135795191 + B2_Mm2 SINE B2 1 190 -5 3 712 6933 169 49 45 chr5 16742068 16742767 -135794492 + L1_Mur1 LINE L1 3012 3714 -2172 3 712 484 330 44 22 chr5 16742825 16743095 -135794164 - B4 SINE B4 -16 276 1 3 712 180 328 0 0 chr5 16743406 16743467 -135793792 - MER5B DNA MER1_type -115 63 3 3 712 36224 33 2 0 chr5 16744088 16753072 -135784187 - L1Md_T LINE L1 0 6585 1 3 712 338 165 57 24 chr5 16754549 16754673 -135782586 + (TA)n Simple_repeat Simple_repeat 1 128 0 3 712 489 360 32 47 chr5 16755248 16755525 -135781734 + LTR85a LTR Gypsy? 394 666 -36 3 712 726 327 105 0 chr5 16757282 16757539 -135779720 - B4A SINE B4 -2 290 7 3 712 967 328 80 59 chr5 16757817 16758584 -135778675 - L1MEc LINE L1 -4871 1529 747 3 712 409 230 116 14 chr5 16760073 16760201 -135777058 + Lx9 LINE L1 7400 7545 -99 3 712 2748 188 14 23 chr5 16760201 16760772 -135776487 - RLTR12A LTR ERVK 0 568 3 3 712 409 230 116 14 chr5 16760772 16760859 -135776400 + Lx9 LINE L1 7546 7637 -7 3 712 1548 138 19 11 chr5 16761525 16761796 -135775463 - Lx LINE L1 -5 6649 6377 3 712 2977 112 0 0 chr5 16761799 16762245 -135775014 + Lx LINE L1 5875 6320 -334 3 712 939 276 42 8 chr5 16762349 16762729 -135774530 - Lx9 LINE L1 -6 7638 7246 3 712 435 171 23 0 chr5 16762727 16762815 -135774444 + Lx9 LINE L1 6920 7009 -635 3 712 23 0 0 0 chr5 16762934 16762957 -135774302 + AT_rich Low_complexity Low_complexity 1 23 0 3 712 7030 147 53 14 chr5 16762959 16764334 -135772925 - Lx3C LINE L1 -2 7056 5557 3 712 4384 106 5 3 chr5 16764512 16765155 -135772104 - L1_Mus4 LINE L1 -7 6629 5986 3 712 220 366 0 0 chr5 16766489 16766571 -135770688 - MER5A DNA MER1_type -107 82 1 3 712 883 194 44 0 chr5 16766740 16766946 -135770313 - RMER1B Other Other -2 1064 850 3 712 1198 181 9 0 chr5 16766945 16767177 -135770082 + RMER1B Other Other 630 863 -203 3 712 216 255 78 0 chr5 16769589 16769640 -135767619 + B3 SINE B2 29 83 -133 3 712 562 319 50 27 chr5 16769604 16769826 -135767433 + B4 SINE B4 48 274 -18 3 712 198 0 0 0 chr5 16769889 16769911 -135767348 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 712 277 117 16 16 chr5 16770036 16770097 -135767162 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 3 712 201 147 0 0 chr5 16771053 16771087 -135766172 + (CAG)n Simple_repeat Simple_repeat 2 35 0 3 712 678 233 53 14 chr5 16771255 16771429 -135765830 - B3A SINE B2 -3 213 28 3 712 311 119 0 56 chr5 16771429 16771500 -135765759 - L1Md_F2 LINE L1 0 6582 6516 3 712 678 223 40 7 chr5 16771500 16771524 -135765735 - B3A SINE B2 -170 28 5 3 712 21 36 0 0 chr5 16771527 16771555 -135765704 + AT_rich Low_complexity Low_complexity 1 28 0 3 712 2997 21 0 0 chr5 16771718 16772055 -135765204 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 712 20263 13 1 0 chr5 16772055 16774411 -135762848 - IAPEz-int LTR ERVK 0 6481 4123 3 712 886 73 24 0 chr5 16774413 16774536 -135762723 - IAPEz-int LTR ERVK -2770 4910 4785 3 712 1741 111 4 4 chr5 16774533 16774795 -135762464 - IAPEz-int LTR ERVK -5183 2497 2236 3 712 424 38 0 0 chr5 16774794 16774847 -135762412 - IAPEz-int LTR ERVK -5070 1411 1359 3 712 4687 56 5 33 chr5 16774847 16775512 -135761747 - IAPEz-int LTR ERVK -5819 662 17 3 712 2982 18 3 0 chr5 16775535 16775871 -135761388 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 712 492 329 12 12 chr5 16776530 16776693 -135760566 + RSINE1 SINE B4 3 165 0 3 712 24 0 0 0 chr5 16776708 16776732 -135760527 + AT_rich Low_complexity Low_complexity 1 24 0 3 712 533 356 56 20 chr5 16776733 16776928 -135760331 + B4A SINE B4 85 286 -6 3 712 210 91 0 0 chr5 16776945 16776978 -135760281 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 713 236 331 68 96 chr5 16778442 16778619 -135758640 + MER121 Unknown Unknown 12 183 -229 3 713 1016 24 0 0 chr5 16780754 16780878 -135756381 + B1_Mus2 SINE Alu 18 141 -6 3 713 669 25 0 0 chr5 16780880 16780959 -135756300 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 3 713 780 281 5 5 chr5 16780984 16781181 -135756078 + B3 SINE B2 5 201 -15 3 713 351 241 126 29 chr5 16781806 16781981 -135755278 - RLTR16 LTR ERVK -299 206 15 3 713 917 224 208 4 chr5 16782669 16782924 -135754335 - Lx5 LINE L1 0 7050 6744 3 713 597 133 41 0 chr5 16782953 16783051 -135754208 + Lx5 LINE L1 5849 5950 -1100 3 713 3993 98 66 90 chr5 16783099 16783868 -135753391 - RMER17A LTR ERVK 0 751 1 3 713 196 316 96 9 chr5 16784357 16784472 -135752787 + MIR SINE MIR 66 190 -72 3 713 23 68 0 0 chr5 16784504 16784548 -135752711 + AT_rich Low_complexity Low_complexity 1 44 0 3 713 302 313 36 29 chr5 16784603 16784741 -135752518 - L1MEg LINE L1 -4145 1939 1801 3 713 504 0 0 0 chr5 16785087 16785143 -135752116 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 713 243 0 0 0 chr5 16785391 16785418 -135751841 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 713 225 108 0 0 chr5 16786496 16786533 -135750726 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 713 762 153 140 0 chr5 16786550 16786707 -135750552 - B2_Mm2 SINE B2 -16 179 1 3 713 241 248 47 47 chr5 16787076 16787219 -135750040 - RMER17D LTR ERVK -430 459 317 3 713 423 0 0 0 chr5 16787219 16787266 -135749993 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 3 713 241 248 47 47 chr5 16787266 16787355 -135749904 - RMER17D LTR ERVK -573 316 227 3 713 447 261 99 73 chr5 16788011 16788131 -135749128 + Lx9 LINE L1 7364 7469 -175 3 713 354 107 0 0 chr5 16788131 16788187 -135749072 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 713 447 261 99 73 chr5 16788187 16788298 -135748961 + Lx9 LINE L1 7470 7600 -44 3 713 294 246 92 86 chr5 16788473 16788614 -135748645 - B1F SINE Alu 0 149 3 3 713 243 170 0 0 chr5 16788979 16789026 -135748233 + A-rich Low_complexity Low_complexity 1 47 0 3 713 189 286 75 21 chr5 16789307 16789400 -135747859 + MIRb SINE MIR 95 192 -76 3 713 246 338 14 0 chr5 16789707 16789781 -135747478 - ID4_ SINE ID -5 78 4 3 713 261 0 0 0 chr5 16790000 16790029 -135747230 + (A)n Simple_repeat Simple_repeat 1 29 0 3 713 270 310 25 57 chr5 16791184 16791309 -135745950 + ID4 SINE ID 9 129 -23 3 713 21 36 0 0 chr5 16791710 16791738 -135745521 + AT_rich Low_complexity Low_complexity 1 28 0 3 713 718 212 42 88 chr5 16791748 16791882 -135745377 - B3 SINE B2 -8 208 84 3 713 1906 190 146 82 chr5 16791882 16792456 -135744803 - RMER19C LTR ERVK 0 611 1 3 713 718 212 42 88 chr5 16792456 16792538 -135744721 - B3 SINE B2 -133 83 2 3 713 324 330 58 21 chr5 16792676 16792865 -135744394 + L1MD LINE L1 4054 4249 -1897 3 713 248 306 88 22 chr5 16792979 16793206 -135744053 + L1MD LINE L1 4424 4665 -1481 3 713 251 141 16 0 chr5 16793379 16793443 -135743816 + CT-rich Low_complexity Low_complexity 1 65 0 3 713 897 123 92 6 chr5 16793885 16794049 -135743210 - B2_Mm1t SINE B2 -14 179 2 3 713 254 289 45 83 chr5 16794150 16794440 -135742819 + L1ME1 LINE L1 5703 5981 -198 3 713 452 48 16 0 chr5 16794781 16794844 -135742415 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 3 713 351 328 5 105 chr5 16794890 16795081 -135742178 - Lx7 LINE L1 -388 7308 7137 3 713 221 284 147 13 chr5 16795133 16795208 -135742051 - B1F1 SINE Alu -52 97 13 3 713 4671 141 34 0 chr5 16795273 16796030 -135741229 - Lx2A1 LINE L1 -5 7003 6221 3 713 303 332 126 0 chr5 16796032 16796222 -135741037 + B3 SINE B2 2 215 -1 3 713 256 343 28 40 chr5 16796236 16796454 -135740805 + MIRb SINE MIR 32 246 -22 3 713 298 91 61 0 chr5 16796804 16796870 -135740389 + (TATG)n Simple_repeat Simple_repeat 3 72 0 3 713 351 136 0 0 chr5 16797183 16797242 -135740017 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 713 225 65 0 0 chr5 16797244 16797275 -135739984 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 713 387 0 0 0 chr5 16797750 16797793 -135739466 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 713 279 300 85 112 chr5 16799029 16799404 -135737855 + MER97c DNA MER1_type? 387 751 -339 3 713 1166 124 17 0 chr5 16799435 16799612 -135737647 + B2_Mm2 SINE B2 2 181 -14 3 713 1052 199 136 22 chr5 16800031 16800304 -135736955 - Lx2 LINE L1 -811 6186 5883 3 713 4224 152 25 6 chr5 16800304 16801017 -135736242 + Lx2 LINE L1 6268 6994 -3 3 713 25 31 0 0 chr5 16801188 16801220 -135736039 + AT_rich Low_complexity Low_complexity 1 32 0 3 713 27 0 0 0 chr5 16801509 16801536 -135735723 + AT_rich Low_complexity Low_complexity 1 27 0 3 713 1009 122 0 0 chr5 16801662 16801809 -135735450 + B1_Mus1 SINE Alu 1 147 -1 3 713 180 0 0 0 chr5 16801953 16801973 -135735286 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 713 253 43 21 42 chr5 16801982 16802030 -135735229 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 3 713 817 35 0 34 chr5 16802841 16802960 -135734299 + L1Md_F2 LINE L1 6456 6570 -12 3 713 222 156 0 22 chr5 16803043 16803089 -135734170 + A-rich Low_complexity Low_complexity 2 46 0 3 713 359 331 60 34 chr5 16803464 16803733 -135733526 + MLT1B LTR MaLR 3 278 -112 3 713 269 266 78 39 chr5 16804228 16804357 -135732902 - LTR40b LTR ERVL -62 400 267 3 713 232 276 127 58 chr5 16804636 16804694 -135732565 - L1MA4A LINE L1 -300 6003 5951 3 713 5106 64 4 15 chr5 16804694 16805374 -135731885 + L1Md_F2 LINE L1 5909 6581 -1 3 713 232 276 127 58 chr5 16805374 16805488 -135731771 - L1MA4A LINE L1 -353 5950 5819 3 713 217 51 51 0 chr5 16805493 16805532 -135731727 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 3 713 198 0 0 0 chr5 16805557 16805579 -135731680 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 4 713 802 188 30 6 chr5 16805611 16805777 -135731482 - Lx6 LINE L1 -8 7452 7283 4 713 522 280 283 0 chr5 16805778 16806082 -135731177 - Lx7 LINE L1 -702 6994 6605 4 713 887 162 0 20 chr5 16806218 16806369 -135730890 + B1_Mus1 SINE Alu 1 148 0 4 713 198 0 0 0 chr5 16806369 16806391 -135730868 + (A)n Simple_repeat Simple_repeat 1 22 0 4 713 312 70 0 0 chr5 16806392 16806435 -135730824 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 713 310 319 0 7 chr5 16807094 16807122 -135730137 + polypyrimidine Low_complexity Low_complexity 109 136 0 4 713 212 100 25 0 chr5 16807122 16807162 -135730097 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 713 310 319 0 7 chr5 16807162 16807269 -135729990 + CT-rich Low_complexity Low_complexity 3 108 0 4 713 783 102 0 0 chr5 16807273 16807401 -135729858 + (TC)n Simple_repeat Simple_repeat 1 128 0 4 713 381 93 0 0 chr5 16808996 16809050 -135728209 + (TCCCC)n Simple_repeat Simple_repeat 3 56 0 4 713 244 352 0 11 chr5 16809050 16809142 -135728117 - BC1_Mm scRNA scRNA -57 95 5 4 713 387 278 188 23 chr5 16809144 16809405 -135727854 - L1_Rod LINE L1 -538 5309 5006 4 713 244 31 42 97 chr5 16809573 16809645 -135727614 + T-rich Low_complexity Low_complexity 5 72 0 4 713 971 259 116 11 chr5 16809676 16809961 -135727298 + Lx8 LINE L1 6657 6971 -502 4 713 601 91 0 0 chr5 16809979 16810078 -135727181 + L1Md_F2 LINE L1 6472 6570 -12 4 713 477 189 0 0 chr5 16810150 16810245 -135727014 + GA-rich Low_complexity Low_complexity 2 96 0 4 713 828 331 43 14 chr5 16810250 16810329 -135726930 + Lx8 LINE L1 6988 7072 -401 4 713 243 0 0 0 chr5 16810329 16810356 -135726903 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 713 828 331 43 14 chr5 16810356 16810628 -135726631 + Lx8 LINE L1 7073 7349 -124 4 713 3895 145 3 6 chr5 16812644 16813274 -135723985 - Lx LINE L1 0 6654 6027 4 713 3307 136 0 0 chr5 16813274 16813773 -135723486 + Lx LINE L1 5385 5883 0 4 713 8360 144 28 7 chr5 16813883 16815761 -135721498 - Lx3C LINE L1 -3 6973 4985 4 713 301 298 132 6 chr5 16816162 16816321 -135720938 + MER3 DNA MER1_type 13 191 -18 4 713 400 196 32 21 chr5 16816489 16816583 -135720676 + Lx7 LINE L1 7040 7134 -562 4 713 345 318 147 15 chr5 16816676 16816874 -135720385 + MLT1A0 LTR MaLR 142 365 0 4 713 25 0 0 0 chr5 16818263 16818288 -135718971 + AT_rich Low_complexity Low_complexity 1 25 0 4 713 23 33 0 0 chr5 16818603 16818633 -135718626 + AT_rich Low_complexity Low_complexity 1 30 0 4 713 3507 19 139 0 chr5 16818667 16819100 -135718159 + MT2_Mm LTR ERVL 1 493 0 4 713 46882 17 9 0 chr5 16819100 16824414 -135712845 + MERVL-int LTR ERVL 1 5360 -125 4 713 367 179 46 35 chr5 16824414 16824501 -135712758 + ORR1A3-int LTR MaLR 553 640 -1323 4 713 314 0 0 0 chr5 16824501 16824539 -135712720 + MERVL-int LTR ERVL 5448 5485 0 4 713 3535 21 136 0 chr5 16824539 16824973 -135712286 + MT2_Mm LTR ERVL 1 493 0 4 713 365 70 0 17 chr5 16824984 16825042 -135712217 + (TTTTC)n Simple_repeat Simple_repeat 4 60 0 4 713 3080 245 82 7 chr5 16825507 16826377 -135710882 + Lx9 LINE L1 6709 7643 -1 4 713 26 30 0 0 chr5 16826648 16826681 -135710578 + AT_rich Low_complexity Low_complexity 1 33 0 4 713 473 47 16 0 chr5 16826871 16826935 -135710324 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 4 713 861 300 18 57 chr5 16829068 16829189 -135708070 + B4A SINE B4 24 143 -149 4 713 3367 25 5 0 chr5 16829189 16829583 -135707676 - MTA_Mm LTR MaLR 0 396 1 4 713 861 300 18 57 chr5 16829583 16829740 -135707519 + B4A SINE B4 144 291 -1 4 713 597 14 0 0 chr5 16829756 16829826 -135707433 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 713 270 0 0 0 chr5 16829826 16829855 -135707404 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 713 369 0 0 0 chr5 16830231 16830272 -135706987 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 713 21 0 0 0 chr5 16830455 16830476 -135706783 + AT_rich Low_complexity Low_complexity 1 21 0 4 713 2754 131 42 4 chr5 16830859 16831311 -135705948 - Lx2 LINE L1 -731 6266 5798 4 713 3884 127 42 5 chr5 16831311 16831930 -135705329 + Lx2 LINE L1 6355 6996 -1 4 713 4872 254 95 23 chr5 16832332 16833239 -135704020 - Lx7 LINE L1 -5 7691 6742 4 713 333 0 0 0 chr5 16833239 16833276 -135703983 + (TTAG)n Simple_repeat Simple_repeat 3 39 0 4 713 4710 252 77 83 chr5 16833276 16834341 -135702918 - Lx7 LINE L1 -955 6741 5732 4 713 785 311 43 47 chr5 16834517 16834866 -135702393 + MLT1A0 LTR MaLR 8 399 -9 4 713 1754 327 45 34 chr5 16836193 16836955 -135700304 - Lx9 LINE L1 -205 7439 6677 4 713 2569 64 0 0 chr5 16836955 16837266 -135699993 - RLTR10E LTR ERVK 0 311 1 4 713 1754 327 45 34 chr5 16837266 16837590 -135699669 - Lx9 LINE L1 -968 6676 6341 4 713 495 33 0 0 chr5 16837608 16837669 -135699590 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 713 258 311 30 69 chr5 16837864 16837995 -135699264 - B4A SINE B4 -9 283 158 4 713 421 301 39 104 chr5 16838031 16838213 -135699046 - B4 SINE B4 -122 170 1 4 713 414 337 126 8 chr5 16839438 16839692 -135697567 + B4A SINE B4 1 284 -8 4 713 318 225 22 0 chr5 16840245 16840334 -135696925 + L1M2 LINE L1 4977 5067 -1076 4 713 370 314 8 8 chr5 16840405 16840524 -135696735 - ID_B1 SINE B4 -3 221 103 4 713 22 35 0 0 chr5 16841408 16841437 -135695822 + AT_rich Low_complexity Low_complexity 1 29 0 4 713 4099 44 2 12 chr5 16842680 16843181 -135694078 + L1_Mus1 LINE L1 6070 6565 -2 4 713 345 302 0 0 chr5 16843810 16843906 -135693353 - B1F SINE Alu -5 144 49 4 713 1172 57 0 0 chr5 16845290 16845430 -135691829 + B1_Mus1 SINE Alu 5 144 -4 4 713 26 30 0 0 chr5 16845437 16845470 -135691789 + AT_rich Low_complexity Low_complexity 1 33 0 4 713 16198 120 60 15 chr5 16847234 16850729 -135686530 + L1_Mur1 LINE L1 7 4007 -1879 4 713 3079 142 25 32 chr5 16850758 16851283 -135685976 + Lx3A LINE L1 6456 6976 -5 4 713 32 67 0 0 chr5 16851318 16851378 -135685881 + AT_rich Low_complexity Low_complexity 1 60 0 4 713 202 176 0 73 chr5 16851461 16851516 -135685743 + A-rich Low_complexity Low_complexity 4 54 0 4 713 1879 216 63 78 chr5 16854699 16855187 -135682072 - RLTR19 LTR ERVK -18 481 1 4 713 351 252 65 0 chr5 16855236 16855359 -135681900 + ID_B1 SINE B4 91 221 -3 4 713 9049 110 19 26 chr5 16855779 16856097 -135681162 + Lx3_Mus LINE L1 4350 4667 -1219 4 713 1676 42 28 5 chr5 16856097 16856314 -135680945 - L1Md_F3 LINE L1 0 6584 6363 4 713 9049 110 19 26 chr5 16856314 16857060 -135680199 + Lx3_Mus LINE L1 4668 5384 -502 4 713 3296 35 5 18 chr5 16857060 16857461 -135679798 - MTA_Mm LTR MaLR 0 396 1 4 713 8361 66 6 2 chr5 16857461 16858554 -135678705 - MTA_Mm-int LTR MaLR 0 1098 1 4 713 3223 46 15 3 chr5 16858554 16858945 -135678314 - MTA_Mm LTR MaLR 0 396 1 4 713 9049 95 38 11 chr5 16858945 16860271 -135676988 + Lx3_Mus LINE L1 5385 6764 -245 4 713 918 108 44 13 chr5 16860273 16860432 -135676827 - RLTR10 LTR ERVK 0 390 227 4 713 2452 47 3 6 chr5 16860498 16860817 -135676442 - RLTR10 LTR ERVK -72 318 1 4 713 10453 91 66 52 chr5 16860819 16862737 -135674522 - RLTR10-int LTR ERVK -3 1984 41 4 713 933 102 44 13 chr5 16862747 16862906 -135674353 - RLTR10 LTR ERVK 0 390 227 4 713 2452 47 3 6 chr5 16862972 16863291 -135673968 - RLTR10 LTR ERVK -72 318 1 4 713 1404 130 30 9 chr5 16863291 16863524 -135673735 + Lx3_Mus LINE L1 6761 6998 -11 4 713 726 302 103 9 chr5 16865523 16865844 -135671415 + MER31A LTR ERV1 1 351 -134 4 713 871 274 81 16 chr5 16866318 16866689 -135670570 + Lx8 LINE L1 7074 7468 -5 4 713 387 0 0 0 chr5 16866864 16866907 -135670352 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 713 579 202 0 0 chr5 16867007 16867136 -135670123 + (TTG)n Simple_repeat Simple_repeat 1 129 0 4 713 467 250 13 70 chr5 16867136 16867282 -135669977 - B1_Mus2 SINE Alu -2 148 5 4 713 705 257 17 84 chr5 16867350 16867588 -135669671 + RMER15 LTR ERVL 41 262 -313 4 713 510 279 62 0 chr5 16867644 16867773 -135669486 - B1F SINE Alu 0 149 13 4 713 308 373 8 33 chr5 16867814 16867936 -135669323 + B3A SINE B2 2 120 -78 4 713 3441 89 0 25 chr5 16868036 16868521 -135668738 + L1Md_F2 LINE L1 6097 6569 -13 4 713 468 0 0 0 chr5 16868698 16868750 -135668509 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 713 219 364 0 0 chr5 16868877 16868954 -135668305 + MIR SINE MIR 97 173 -89 4 713 1818 208 137 52 chr5 16869034 16869856 -135667403 + RMER6C LTR ERVK 1 718 -38 4 713 7810 21 1 2 chr5 16870451 16871407 -135665852 - L1Md_A LINE L1 0 6582 5651 4 713 1173 68 14 0 chr5 16871426 16871573 -135665686 - B1_Mur4 SINE Alu 0 150 2 4 713 408 222 42 85 chr5 16871680 16871699 -135665560 + MT2B LTR ERVL 151 164 -437 4 713 659 90 60 0 chr5 16871699 16871799 -135665460 + B1_Mus2 SINE Alu 3 108 -39 4 713 26837 106 11 1 chr5 16871800 16876581 -135660678 + L1_Mus1 LINE L1 1537 6369 -198 4 713 272 275 54 81 chr5 16877471 16877582 -135659677 - PB1D7 SINE Alu -3 117 10 4 713 1434 239 41 113 chr5 16877631 16878169 -135659090 + RLTR19 LTR ERVK 1 499 0 4 713 239 226 0 0 chr5 16880825 16880878 -135656381 + CT-rich Low_complexity Low_complexity 2 54 0 4 713 259 269 25 13 chr5 16880992 16881071 -135656188 - MER5A DNA MER1_type -109 80 1 4 713 310 304 13 0 chr5 16883916 16883995 -135653264 + B1_Mur1 SINE Alu 53 132 -17 4 713 6200 80 4 4 chr5 16884303 16885132 -135652127 - L1Md_F2 LINE L1 0 6582 5754 4 713 1926 79 27 67 chr5 16885132 16885429 -135651830 - ORR1A1 LTR MaLR -61 285 1 4 713 390 224 0 0 chr5 16885429 16885514 -135651745 - RLTR19 LTR ERVK -409 90 6 4 713 296 306 54 27 chr5 16887926 16888037 -135649222 + B1F1 SINE Alu 23 136 -13 4 713 256 247 194 56 chr5 16888429 16888609 -135648650 - B3 SINE B2 -11 205 1 4 713 922 257 133 54 chr5 16888822 16889437 -135647822 + RLTR31_Mur LTR ERVK 1 537 -16 4 713 221 163 0 0 chr5 16889438 16889481 -135647778 + T-rich Low_complexity Low_complexity 1 43 0 4 713 213 170 19 19 chr5 16889956 16890010 -135647249 + A-rich Low_complexity Low_complexity 3 56 0 4 713 203 0 37 0 chr5 16890270 16890297 -135646962 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 4 713 23 78 0 0 chr5 16890422 16890473 -135646786 + AT_rich Low_complexity Low_complexity 1 51 0 4 713 22 70 0 0 chr5 16890898 16890941 -135646318 + AT_rich Low_complexity Low_complexity 1 43 0 4 713 31 0 0 0 chr5 16892061 16892092 -135645167 + AT_rich Low_complexity Low_complexity 1 31 0 4 713 1298 76 27 11 chr5 16892096 16892283 -135644976 - L1Md_F2 LINE L1 -12 6570 6381 4 713 257 193 375 0 chr5 16892481 16892569 -135644690 + MER5A1 DNA MER1_type 43 163 -3 5 713 264 280 75 57 chr5 16892698 16892804 -135644455 - MLT1A1 LTR MaLR -1 407 300 5 713 31 26 0 0 chr5 16893663 16893701 -135643558 + AT_rich Low_complexity Low_complexity 1 38 0 5 713 1899 176 14 81 chr5 16893708 16894128 -135643131 - ORR1B1 LTR MaLR -2 392 1 5 713 246 307 145 78 chr5 16894129 16894295 -135642964 - B3 SINE B2 -29 187 11 5 713 27 0 0 0 chr5 16894317 16894344 -135642915 + AT_rich Low_complexity Low_complexity 1 27 0 5 713 186 43 0 0 chr5 16894396 16894419 -135642840 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 5 713 207 0 0 0 chr5 16894419 16894441 -135642818 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 713 353 227 36 0 chr5 16894447 16894557 -135642702 - Lx9 LINE L1 0 7644 7531 5 713 201 239 0 0 chr5 16894572 16894618 -135642641 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 713 1467 247 150 19 chr5 16894702 16895239 -135642020 - Lx9 LINE L1 -592 7052 6446 5 713 374 0 0 21 chr5 16895441 16895488 -135641771 + (TAA)n Simple_repeat Simple_repeat 1 46 0 5 713 347 318 40 6 chr5 16898242 16898416 -135638843 + L1_Mur3 LINE L1 78 257 -7455 5 713 1223 277 81 31 chr5 16898634 16899115 -135638144 - Lx8 LINE L1 -2 7471 6967 5 713 267 245 48 10 chr5 16899162 16899265 -135637994 - Lx3C LINE L1 -2 6974 6868 5 713 653 284 44 79 chr5 16899251 16899568 -135637691 - Lx8 LINE L1 -544 6929 6624 5 713 401 274 0 0 chr5 16899588 16899701 -135637558 - Lx8 LINE L1 -981 6492 6380 5 713 216 0 0 0 chr5 16900105 16900129 -135637130 + (A)n Simple_repeat Simple_repeat 1 24 0 5 713 901 175 9 4 chr5 16901832 16902056 -135635203 + GA-rich Low_complexity Low_complexity 1 225 0 5 713 513 287 32 60 chr5 16902200 16902385 -135634874 + B3A SINE B2 24 203 -13 5 713 213 258 0 0 chr5 16902385 16902478 -135634781 + (CA)n Simple_repeat Simple_repeat 1 93 0 5 713 21 0 0 0 chr5 16902913 16902934 -135634325 + AT_rich Low_complexity Low_complexity 1 21 0 5 713 1756 118 63 47 chr5 16903777 16904096 -135633163 - ORR1A3 LTR MaLR 0 326 3 5 713 213 318 23 23 chr5 16904867 16904954 -135632305 - BC1_Mm scRNA scRNA -42 110 24 5 713 812 216 12 6 chr5 16907157 16907320 -135629939 - RLTR18 LTR ERVK -447 169 6 5 713 502 252 114 19 chr5 16907605 16907815 -135629444 + Lx8 LINE L1 6248 6477 -996 5 713 531 64 11 10 chr5 16907817 16907911 -135629348 - L1_Mus2 LINE L1 -3 6579 6486 5 89 1335 311 49 14 chr5 16907894 16908524 -135628735 + Lx8 LINE L1 6462 7113 -360 5 714 255 79 0 0 chr5 16908981 16909019 -135628240 + (CAA)n Simple_repeat Simple_repeat 1 38 0 5 714 2932 142 23 2 chr5 16910054 16910540 -135626719 - Lx3_Mus LINE L1 -8 7001 6506 5 714 9319 17 0 0 chr5 16911700 16913430 -135623829 + L1Md_A LINE L1 4782 6510 -72 5 714 766 197 52 47 chr5 16913575 16913771 -135623488 + MLT1E LTR MaLR 80 277 -376 5 714 237 400 34 14 chr5 16913840 16913987 -135623272 + MLT1E LTR MaLR 504 653 0 5 714 459 0 0 0 chr5 16914734 16914785 -135622474 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 714 968 321 53 2 chr5 16914814 16915251 -135622008 + L1_Mur3 LINE L1 102 560 -7168 5 714 1362 239 73 12 chr5 16915244 16915723 -135621536 + L1_Mur3 LINE L1 833 1340 -6388 5 714 2140 148 75 19 chr5 16915718 16916084 -135621175 + Lx2B LINE L1 5686 6047 -953 5 714 620 13 13 0 chr5 16916084 16916161 -135621098 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 714 2140 148 75 19 chr5 16916161 16916208 -135621051 + Lx2B LINE L1 6048 6122 -878 5 714 590 231 186 61 chr5 16916209 16916536 -135620723 - RLTR9A LTR ERVK 0 368 1 5 714 8523 259 63 22 chr5 16917045 16920389 -135616870 - ETnERV2-int LTR ERVK -1202 6204 1939 5 714 955 72 14 0 chr5 16920389 16920527 -135616732 - L1_Mus1 LINE L1 -492 6075 5936 5 714 3488 52 9 0 chr5 16920536 16920983 -135616276 + L1_Mus1 LINE L1 6080 6530 -37 5 714 2647 307 42 47 chr5 16921104 16922645 -135614614 - ETnERV2-int LTR ERVK -4951 2455 328 5 714 436 292 31 49 chr5 16922934 16923096 -135614163 - RLTR9A LTR ERVK 0 368 210 5 714 2782 148 57 14 chr5 16923125 16923613 -135613646 + Lx2B LINE L1 6491 6999 -1 5 714 244 109 22 0 chr5 16923614 16923660 -135613599 + L1_Mur3 LINE L1 1347 1393 -4487 5 714 748 119 0 8 chr5 16923665 16923784 -135613475 - Lx3B LINE L1 -476 6497 6380 5 714 323 188 47 0 chr5 16923777 16923841 -135613418 + Lx3B LINE L1 6629 6695 -278 5 714 909 163 48 0 chr5 16923844 16924010 -135613249 + Lx3B LINE L1 6797 6970 -3 5 714 387 0 0 0 chr5 16924078 16924121 -135613138 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 5 714 243 224 0 17 chr5 16926243 16926302 -135610957 + (TAA)n Simple_repeat Simple_repeat 2 59 0 5 714 30 0 0 0 chr5 16926426 16926456 -135610803 + AT_rich Low_complexity Low_complexity 1 30 0 5 714 518 315 10 78 chr5 16926599 16926792 -135610467 - B3A SINE B2 -29 187 8 5 714 635 343 68 14 chr5 16926803 16927155 -135610104 - Lx8 LINE L1 -149 7324 6954 5 714 3144 282 49 31 chr5 16927230 16928555 -135608704 - RMER1A Other Other -15 1015 48 5 714 1178 108 23 0 chr5 16930289 16930465 -135606794 + ORR1B1 LTR MaLR 215 394 0 5 714 1430 303 4 74 chr5 16930925 16931455 -135605804 + RMER1B Other Other 36 528 -538 5 714 1132 303 39 28 chr5 16931491 16931926 -135605333 + RMER1A Other Other 1 440 -590 5 714 2855 175 97 19 chr5 16931915 16932554 -135604705 + RMER1A Other Other 337 1025 -5 5 714 2448 287 47 60 chr5 16932781 16933979 -135603280 + Lx5 LINE L1 5855 7405 -55 5 714 398 327 43 57 chr5 16934023 16934234 -135603025 + B3 SINE B2 2 209 -7 5 714 259 254 125 14 chr5 16935605 16935677 -135601582 + ID2 SINE ID 1 80 -3 5 714 3242 244 56 35 chr5 16936315 16936648 -135600611 - Lx9 LINE L1 -219 7425 7075 5 714 1210 204 0 0 chr5 16936648 16936874 -135600385 + URR1A DNA MER1_type 1 226 0 5 714 3242 244 56 35 chr5 16936874 16937519 -135599740 - Lx9 LINE L1 -570 7074 6426 5 714 339 25 0 0 chr5 16937853 16937893 -135599366 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 714 2008 147 0 50 chr5 16938790 16939133 -135598126 + ORR1A3 LTR MaLR 1 326 0 5 714 294 308 6 7 chr5 16939365 16939512 -135597747 + L1_Mur1 LINE L1 5095 5284 -602 5 714 495 297 47 57 chr5 16939856 16940049 -135597210 + B4A SINE B4 58 248 -44 5 714 25 0 0 0 chr5 16940124 16940149 -135597110 + AT_rich Low_complexity Low_complexity 1 25 0 5 714 359 333 15 38 chr5 16940214 16940345 -135596914 + ID_B1 SINE B4 87 214 -10 5 714 833 145 71 88 chr5 16940673 16940855 -135596404 - ORR1C1 LTR MaLR 0 367 189 5 714 677 274 64 70 chr5 16940855 16941018 -135596241 + RLTR15 LTR ERVK 1 167 -192 5 714 3382 30 5 0 chr5 16941018 16941412 -135595847 + MTA_Mm LTR MaLR 1 396 0 5 714 677 274 64 70 chr5 16941412 16941578 -135595681 + RLTR15 LTR ERVK 168 328 -31 5 714 921 169 18 114 chr5 16941595 16941822 -135595437 - ORR1C1 LTR MaLR -173 205 1 5 714 561 256 148 94 chr5 16942126 16942424 -135594835 - ORR1E LTR MaLR -42 317 4 5 714 22 88 0 0 chr5 16942606 16942663 -135594596 + AT_rich Low_complexity Low_complexity 1 57 0 5 714 25 31 0 0 chr5 16942720 16942752 -135594507 + AT_rich Low_complexity Low_complexity 1 32 0 5 714 253 316 25 12 chr5 16942893 16942973 -135594286 - ID4 SINE ID 0 83 3 5 714 4420 131 21 3 chr5 16943684 16944359 -135592900 - Lx2 LINE L1 -12 6985 6299 5 714 2468 96 3 44 chr5 16946162 16946545 -135590714 - Lx LINE L1 -1 6653 6287 5 714 7520 162 30 12 chr5 16946545 16946988 -135590271 - L1_Mur2 LINE L1 -597 5280 4838 5 714 3074 63 0 15 chr5 16946988 16947390 -135589869 - MTA_Mm LTR MaLR 0 396 1 5 714 7520 162 30 12 chr5 16947390 16948473 -135588786 - L1_Mur2 LINE L1 -1040 4837 3726 5 714 2632 196 39 13 chr5 16948473 16948924 -135588335 + RLTR20B2 LTR ERVK 1 465 -95 5 714 369 0 0 0 chr5 16948924 16948965 -135588294 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 714 2632 196 39 13 chr5 16948965 16949056 -135588203 + RLTR20B2 LTR ERVK 466 556 -4 5 714 365 159 11 22 chr5 16949056 16949146 -135588113 - L1_Mur2 LINE L1 -2143 3734 3646 5 714 3890 213 65 12 chr5 16949153 16950135 -135587124 - Lx3C LINE L1 -2 6974 5941 5 714 2227 116 2 56 chr5 16950112 16950542 -135586717 - L1_Mur2 LINE L1 -2216 3661 3255 5 714 1156 116 10 0 chr5 16950532 16950730 -135586529 - L1Md_A LINE L1 0 6582 6383 5 714 5546 107 13 70 chr5 16950723 16951803 -135585456 - L1_Mur2 LINE L1 -2610 3267 2250 5 714 2464 182 25 0 chr5 16951795 16952316 -135584943 - L1_Mur2 LINE L1 -5868 1218 685 5 714 6500 179 52 142 chr5 16952317 16954124 -135583135 - ORR1B1-int LTR MaLR -317 1646 3 5 714 1525 225 39 36 chr5 16954123 16954480 -135582779 - ORR1B1 LTR MaLR 0 394 1 5 714 350 274 55 51 chr5 16954480 16954660 -135582599 + RLTR17 LTR ERVK 27 258 -434 5 714 1021 131 6 6 chr5 16954748 16954925 -135582334 + (TTC)n Simple_repeat Simple_repeat 3 179 0 5 714 354 123 0 0 chr5 16954925 16954982 -135582277 + (TCC)n Simple_repeat Simple_repeat 3 59 0 5 714 528 62 12 0 chr5 16954986 16955066 -135582193 - L1_Mus3 LINE L1 -6 6632 6552 5 714 526 32 0 0 chr5 16955066 16955129 -135582130 - Lx LINE L1 -426 6228 6166 5 714 1553 260 98 32 chr5 16955179 16955505 -135581754 - L1_Rod LINE L1 0 5847 5507 5 714 270 0 0 0 chr5 16955505 16955535 -135581724 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 5 714 1553 260 98 32 chr5 16955535 16955661 -135581598 - L1_Rod LINE L1 -341 5506 5348 5 714 366 23 0 0 chr5 16955661 16955704 -135581555 + (TTA)n Simple_repeat Simple_repeat 1 43 0 5 714 1553 260 98 32 chr5 16955704 16955945 -135581314 - L1_Rod LINE L1 -500 5347 5107 5 714 245 183 16 32 chr5 16956114 16956176 -135581083 + CT-rich Low_complexity Low_complexity 2 62 0 5 714 1048 78 7 0 chr5 16956775 16956916 -135580343 + B1_Mus2 SINE Alu 6 147 0 5 714 2887 100 16 9 chr5 16957140 16957573 -135579686 - L1_Mus3 LINE L1 -14 6624 6189 5 714 705 202 0 0 chr5 16957746 16957865 -135579394 - B1_Mur1 SINE Alu -8 141 23 5 714 23 0 0 0 chr5 16958199 16958222 -135579037 + AT_rich Low_complexity Low_complexity 1 23 0 5 714 236 312 16 16 chr5 16958356 16958483 -135578776 - L1MDa LINE L1 -5357 1276 1150 5 714 28 0 0 0 chr5 16960543 16960571 -135576688 + AT_rich Low_complexity Low_complexity 1 28 0 5 714 252 0 0 0 chr5 16960753 16960781 -135576478 + (TTA)n Simple_repeat Simple_repeat 1 28 0 5 714 3187 136 52 4 chr5 16960813 16961375 -135575884 - Lx3B LINE L1 -34 6939 6351 5 714 218 326 98 30 chr5 16961839 16961972 -135575287 - L3 LINE CR1 -68 4421 4280 5 714 278 365 34 34 chr5 16962030 16962234 -135575025 - MER3 DNA MER1_type 0 209 6 5 714 196 344 187 39 chr5 16962618 16962821 -135574438 - L2 LINE L2 -388 3031 2799 5 714 239 321 82 22 chr5 16962930 16963064 -135574195 - L3 LINE CR1 -438 4051 3910 5 714 751 313 97 48 chr5 16964172 16964729 -135572530 + Lx8 LINE L1 6884 7467 -6 5 714 243 313 109 43 chr5 16965448 16965658 -135571601 + L2a LINE L2 3199 3422 -4 5 714 30 45 0 0 chr5 16965732 16965776 -135571483 + AT_rich Low_complexity Low_complexity 1 44 0 5 714 692 326 114 14 chr5 16965807 16965859 -135571400 - L1MA8 LINE L1 -23 6268 6221 6 714 3812 169 26 13 chr5 16965859 16966542 -135570717 + RLTR17 LTR ERVK 1 692 0 6 714 741 310 124 16 chr5 16966542 16967298 -135569961 - L1MA8 LINE L1 -71 6220 5379 6 714 498 283 13 0 chr5 16967457 16967609 -135569650 + Lx6 LINE L1 7296 7449 -11 6 714 427 305 87 31 chr5 16969558 16970112 -135567147 - L1MA8 LINE L1 -2486 3657 3073 6 714 362 338 39 32 chr5 16970130 16970414 -135566845 - Lx8 LINE L1 -2 7471 7186 6 714 660 279 196 31 chr5 16970482 16970996 -135566263 - L1M4 LINE L1 -3069 3077 2479 6 714 679 222 8 0 chr5 16971181 16971307 -135565952 - B1_Mus2 SINE Alu -20 127 1 6 714 382 295 22 58 chr5 16971188 16971325 -135565934 - MT2B LTR ERVL -323 278 147 6 714 34 24 0 0 chr5 16971402 16971443 -135565816 + AT_rich Low_complexity Low_complexity 1 41 0 6 714 2656 239 101 13 chr5 16971481 16972312 -135564947 + RMER13B LTR ERVK 5 908 0 6 714 218 274 119 0 chr5 16972362 16972446 -135564813 - PB1D10 SINE Alu -3 114 21 6 714 768 163 11 60 chr5 16972602 16972785 -135564474 - L1Md_F2 LINE L1 0 6582 6409 6 714 1397 62 0 0 chr5 16972785 16972977 -135564282 - L1_Mus2 LINE L1 -588 5978 5787 6 714 1426 91 39 0 chr5 16972986 16973257 -135564002 + L1_Mus1 LINE L1 6351 6567 0 6 714 477 34 0 0 chr5 16973283 16973342 -135563917 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 714 696 277 57 32 chr5 16973533 16973813 -135563446 - Lx6 LINE L1 -144 7316 7030 6 714 803 93 20 7 chr5 16973822 16974060 -135563199 - L1_Mus3 LINE L1 0 6638 6485 6 714 4894 161 43 45 chr5 16974055 16975067 -135562192 + Lx2A1 LINE L1 5990 7000 -8 6 714 925 193 154 210 chr5 16975089 16975256 -135562003 - RMER6B LTR ERVK -17 444 254 6 714 1136 95 0 0 chr5 16975256 16975403 -135561856 + B1_Mus1 SINE Alu 2 148 0 6 714 925 193 154 210 chr5 16975403 16975701 -135561558 - RMER6B LTR ERVK -208 253 5 6 714 2000 197 85 42 chr5 16976000 16976380 -135560879 - RLTR19 LTR ERVK -7 492 91 6 714 2608 79 6 0 chr5 16976380 16976723 -135560536 - ORR1A1 LTR MaLR -1 345 1 6 714 12464 77 25 3 chr5 16976723 16978477 -135558782 - ORR1A1-int LTR MaLR 0 1792 1 6 714 2562 65 27 0 chr5 16978477 16978814 -135558445 - ORR1A1 LTR MaLR 0 346 1 6 714 2000 197 85 42 chr5 16978814 16978903 -135558356 - RLTR19 LTR ERVK -409 90 3 6 714 3450 27 0 192 chr5 16979757 16980345 -135556914 + IAPLTR2_Mm LTR ERVK 1 475 0 6 714 232 302 45 54 chr5 16980396 16980508 -135556751 - PB1D7 SINE Alu -6 114 4 6 714 1624 232 57 107 chr5 16980550 16981075 -135556184 + RLTR19 LTR ERVK 1 499 0 6 714 203 245 0 0 chr5 16983741 16983790 -135553469 + CT-rich Low_complexity Low_complexity 2 50 0 6 714 259 269 25 13 chr5 16983904 16983983 -135553276 - MER5A DNA MER1_type -109 80 1 6 714 272 293 13 0 chr5 16986872 16986947 -135550312 + B1_Mur1 SINE Alu 53 128 -21 6 714 11565 82 3 3 chr5 16987277 16989611 -135547648 - L1Md_F2 LINE L1 0 6582 4250 6 714 277 362 42 38 chr5 16990134 16990372 -135546887 + Lx8 LINE L1 6621 6859 -785 6 714 256 64 43 0 chr5 16990434 16990481 -135546778 + (TTG)n Simple_repeat Simple_repeat 2 50 0 6 714 361 281 153 0 chr5 16990490 16990713 -135546546 + Lx8 LINE L1 6853 7237 -407 6 714 22 0 0 0 chr5 16991089 16991111 -135546148 + AT_rich Low_complexity Low_complexity 1 22 0 6 714 249 146 0 0 chr5 16992156 16992204 -135545055 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 714 32 43 0 0 chr5 16992809 16992855 -135544404 + AT_rich Low_complexity Low_complexity 1 46 0 6 714 357 274 129 107 chr5 16993019 16993329 -135543930 + L1MEg LINE L1 911 1227 -4857 6 714 31 0 0 0 chr5 16993832 16993863 -135543396 + AT_rich Low_complexity Low_complexity 1 31 0 6 714 798 67 0 0 chr5 16996976 16997081 -135540178 + (TTC)n Simple_repeat Simple_repeat 2 106 0 6 714 1216 92 0 1 chr5 16997586 16997764 -135539495 + L1Md_F2 LINE L1 5426 5586 -297 6 714 8372 30 1 2 chr5 16997764 16998749 -135538510 + L1Md_F2 LINE L1 5587 6570 -12 6 714 1037 82 13 52 chr5 16998772 16998927 -135538332 + B1_Mur4 SINE Alu 2 150 0 6 714 342 349 0 0 chr5 16999657 16999832 -135537427 + (TGG)n Simple_repeat Simple_repeat 1 175 0 6 714 471 191 0 9 chr5 16999894 17000000 -135537259 + RLTR19-int LTR ERVK 1429 1533 -4604 6 714 2789 125 17 15 chr5 17000000 17000478 -135536781 + RLTR19-int LTR ERVK 1534 2012 -4125 1 714 1605 249 25 50 chr5 17001357 17001842 -135535417 - RMER19C LTR ERVK -1 610 138 2 714 187 412 12 0 chr5 17004635 17004720 -135532539 + MIR SINE MIR 16 101 -161 3 714 303 303 53 33 chr5 17005964 17006114 -135531145 + LTR88a LTR Gypsy 648 800 -16 4 714 3119 217 128 31 chr5 17007100 17007822 -135529437 + RLTR25B LTR ERVK 1 816 -212 5 714 468 0 0 0 chr5 17007822 17007874 -135529385 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 714 198 0 0 0 chr5 17007874 17007895 -135529364 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 714 257 0 30 0 chr5 17007895 17007927 -135529332 + (GA)n Simple_repeat Simple_repeat 2 35 0 8 714 3119 217 128 31 chr5 17007927 17008111 -135529148 + RLTR25B LTR ERVK 817 995 -33 5 714 288 0 0 0 chr5 17008291 17008323 -135528936 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 9 714 370 311 67 13 chr5 17008522 17008747 -135528512 - L1MC2 LINE L1 -226 6118 5882 1 714 267 0 22 44 chr5 17008753 17008798 -135528461 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 714 631 316 66 52 chr5 17008939 17009226 -135528033 - B4A SINE B4 0 292 2 1 714 446 325 67 31 chr5 17009230 17009660 -135527599 - L1M2 LINE L1 -531 6462 6020 1 714 1313 90 21 0 chr5 17009698 17009887 -135527372 - B2_Mm1t SINE B2 0 193 1 1 714 300 378 0 0 chr5 17010044 17010142 -135527117 + ID_B1 SINE B4 81 178 -46 1 714 349 313 61 0 chr5 17010057 17010181 -135527078 + B1F1 SINE Alu 13 150 0 1 714 418 319 92 23 chr5 17010195 17010541 -135526718 - L1M2 LINE L1 -916 5929 5560 1 714 258 81 0 0 chr5 17010547 17010584 -135526675 + (TTCTG)n Simple_repeat Simple_repeat 1 37 0 1 714 242 322 79 8 chr5 17010587 17010828 -135526431 - L1M2 LINE L1 -4825 2024 1767 1 714 663 303 7 19 chr5 17010858 17011013 -135526246 - RSINE1 SINE B4 -5 160 8 1 714 6826 158 33 4 chr5 17012312 17013924 -135523335 + L1VL4 LINE L1 510 2174 -1385 1 714 1794 256 117 46 chr5 17013934 17014568 -135522691 - RMER17B LTR ERVK -279 679 1 2 714 2459 135 37 0 chr5 17014568 17014998 -135522261 + L1VL4 LINE L1 2169 2614 -945 1 714 365 119 17 0 chr5 17014992 17015051 -135522208 + L1_Mur2 LINE L1 4220 4279 -1598 2 714 4665 192 52 40 chr5 17015055 17016169 -135521090 + Lx2B LINE L1 5869 6996 -4 2 714 273 86 17 33 chr5 17016672 17016732 -135520527 + (TTC)n Simple_repeat Simple_repeat 3 61 0 2 714 356 292 86 14 chr5 17016735 17016831 -135520428 - HAL1-3A_ME LINE L1 -417 2441 2338 2 714 1462 11 0 11 chr5 17016831 17017009 -135520250 + (TTC)n Simple_repeat Simple_repeat 3 178 0 2 714 356 292 86 14 chr5 17017009 17017051 -135520208 - HAL1-3A_ME LINE L1 -521 2337 2294 2 714 246 156 0 0 chr5 17017051 17017096 -135520163 + C-rich Low_complexity Low_complexity 3 47 0 2 714 222 277 0 0 chr5 17017104 17017151 -135520108 + polypyrimidine Low_complexity Low_complexity 2 48 0 2 714 437 371 0 0 chr5 17017200 17017324 -135519935 - RSINE1 SINE B4 -28 137 14 2 714 360 333 29 22 chr5 17017455 17017593 -135519666 - B1F1 SINE Alu 0 149 11 2 714 237 207 12 24 chr5 17017911 17017995 -135519264 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 3 714 21 0 0 0 chr5 17018249 17018270 -135518989 + AT_rich Low_complexity Low_complexity 1 21 0 3 714 293 240 0 0 chr5 17019602 17019652 -135517607 - ID_B1 SINE B4 -62 162 113 3 714 369 0 0 0 chr5 17019721 17019762 -135517497 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 714 213 196 0 0 chr5 17020066 17020117 -135517142 + A-rich Low_complexity Low_complexity 1 51 0 3 714 687 57 0 0 chr5 17020590 17020678 -135516581 + (TG)n Simple_repeat Simple_repeat 2 89 0 3 714 2349 165 128 90 chr5 17020686 17021332 -135515927 + RMER6C LTR ERVK 5 675 -15 3 714 333 0 0 0 chr5 17021334 17021371 -135515888 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 714 28 0 0 0 chr5 17021403 17021431 -135515828 + AT_rich Low_complexity Low_complexity 1 28 0 3 714 1590 193 63 18 chr5 17021812 17022144 -135515115 - ORR1B2 LTR MaLR -20 347 1 3 714 1277 253 142 19 chr5 17022144 17022556 -135514703 - RMER15 LTR ERVL -90 485 23 4 714 248 20 60 20 chr5 17024746 17024796 -135512463 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 4 714 962 116 7 40 chr5 17024810 17024962 -135512297 - B1_Mus2 SINE Alu 0 147 1 4 714 344 392 63 28 chr5 17026626 17026878 -135510381 + B4A SINE B4 12 272 -20 4 714 362 95 32 0 chr5 17026886 17026949 -135510310 + (CATA)n Simple_repeat Simple_repeat 2 66 0 4 714 423 310 0 0 chr5 17027332 17027432 -135509827 + MTD LTR MaLR 18 117 -302 4 714 31 26 0 0 chr5 17027448 17027486 -135509773 + AT_rich Low_complexity Low_complexity 1 38 0 4 714 638 201 61 39 chr5 17027515 17027696 -135509563 - Lx9 LINE L1 -162 7482 7298 4 714 1838 122 76 3 chr5 17027728 17028032 -135509227 - Lx2B LINE L1 -564 6436 6111 4 714 2846 157 34 29 chr5 17028035 17028128 -135509131 - Lx2B LINE L1 -21 5865 5774 4 714 225 0 0 0 chr5 17028128 17028153 -135509106 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 714 360 0 0 0 chr5 17028153 17028192 -135509067 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 714 2846 157 34 29 chr5 17028192 17028623 -135508636 - Lx2B LINE L1 -113 5773 5338 4 714 23 0 0 0 chr5 17028731 17028754 -135508505 + AT_rich Low_complexity Low_complexity 1 23 0 5 714 5623 107 24 4 chr5 17028882 17029683 -135507576 - Lx3_Mus LINE L1 -201 6808 5992 5 714 1187 134 20 5 chr5 17029686 17029888 -135507371 + Lx3_Mus LINE L1 6805 7009 0 5 714 21 0 0 0 chr5 17029930 17029951 -135507308 + AT_rich Low_complexity Low_complexity 1 21 0 5 714 375 72 0 35 chr5 17030117 17030175 -135507084 + ORR1A4 LTR MaLR 1 56 -273 5 714 627 135 0 0 chr5 17030175 17030271 -135506988 + ORR1A4 LTR MaLR 220 315 -14 5 714 279 0 0 0 chr5 17031072 17031103 -135506156 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 714 3187 50 9 12 chr5 17031145 17031566 -135505693 + L1Md_F2 LINE L1 6162 6581 -1 5 714 189 0 0 0 chr5 17031592 17031613 -135505646 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 714 594 348 48 18 chr5 17032083 17032414 -135504845 + LTR41 LTR ERVL 422 762 -6 5 714 426 232 3 0 chr5 17032697 17032786 -135504473 + PB1D9 SINE Alu 18 107 -13 5 714 477 0 0 0 chr5 17032786 17032839 -135504420 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 6 714 272 330 50 20 chr5 17032962 17033061 -135504198 + PB1D7 SINE Alu 1 102 -18 6 714 307 232 0 0 chr5 17033482 17033551 -135503708 - L1MA9 LINE L1 -9 6303 6235 6 714 2292 140 0 0 chr5 17036928 17037271 -135499988 + Lx3C LINE L1 5460 5802 -84 6 714 6777 24 0 6 chr5 17037270 17038062 -135499197 - L1Md_F3 LINE L1 -210 6374 5588 6 714 1594 39 14 5 chr5 17038079 17038286 -135498973 + L1Md_F3 LINE L1 6374 6582 -2 6 714 189 0 0 0 chr5 17038366 17038387 -135498872 + (A)n Simple_repeat Simple_repeat 1 21 0 6 714 7020 141 19 3 chr5 17038387 17038699 -135498560 + Lx3C LINE L1 5783 6094 -882 6 714 357 24 0 0 chr5 17038699 17038741 -135498518 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 89 7020 141 19 3 chr5 17038741 17039602 -135497657 + Lx3C LINE L1 6095 6973 -3 6 715 25 51 0 0 chr5 17039603 17039642 -135497617 + AT_rich Low_complexity Low_complexity 1 39 0 6 715 1145 343 323 35 chr5 17039739 17039997 -135497262 + Lx8 LINE L1 6539 6858 -615 6 715 1117 75 0 26 chr5 17039997 17040148 -135497111 - B1_Mm SINE Alu 0 147 1 6 715 1145 292 132 87 chr5 17040148 17040721 -135496538 + Lx8 LINE L1 6859 7470 -3 6 715 21 0 0 0 chr5 17041086 17041107 -135496152 + AT_rich Low_complexity Low_complexity 1 21 0 7 715 243 79 0 0 chr5 17041364 17041402 -135495857 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 7 715 21 36 0 0 chr5 17041956 17041984 -135495275 + AT_rich Low_complexity Low_complexity 1 28 0 7 715 30 35 0 34 chr5 17042125 17042143 -135495116 + AT_rich Low_complexity Low_complexity 1 18 0 7 715 776 121 186 0 chr5 17042143 17042267 -135494992 - B1_Mus2 SINE Alu 0 147 1 7 715 30 35 0 34 chr5 17042267 17042307 -135494952 + AT_rich Low_complexity Low_complexity 1 39 0 7 715 21 71 0 0 chr5 17042405 17042447 -135494812 + AT_rich Low_complexity Low_complexity 1 42 0 7 715 3186 56 2 2 chr5 17043227 17043621 -135493638 + MTA_Mm LTR MaLR 1 394 -2 7 715 7099 92 12 70 chr5 17043623 17044788 -135492471 + MTA_Mm-int LTR MaLR 1 1098 0 7 715 3055 64 8 2 chr5 17044788 17045182 -135492077 + MTA_Mm LTR MaLR 1 396 0 7 715 22 35 0 0 chr5 17045962 17045991 -135491268 + AT_rich Low_complexity Low_complexity 1 29 0 7 715 426 168 0 0 chr5 17046166 17046279 -135490980 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 7 715 21 36 0 0 chr5 17046310 17046338 -135490921 + AT_rich Low_complexity Low_complexity 1 28 0 8 715 7899 45 1 3 chr5 17046427 17047387 -135489872 + L1Md_F2 LINE L1 5623 6580 -2 8 715 29 28 0 0 chr5 17047426 17047462 -135489797 + AT_rich Low_complexity Low_complexity 1 36 0 8 715 768 319 45 12 chr5 17050494 17050830 -135486429 - MER63D DNA AcHobo -703 358 12 8 715 217 281 15 15 chr5 17051328 17051393 -135485866 - MIRm SINE MIR -116 160 96 8 715 1810 168 23 40 chr5 17052033 17052380 -135484879 + Lx4A LINE L1 6663 7003 -55 8 715 3016 278 94 93 chr5 17052721 17052790 -135484469 - Lx5 LINE L1 -42 7008 6943 8 715 405 0 0 0 chr5 17052790 17052835 -135484424 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 715 207 0 0 0 chr5 17052835 17052858 -135484401 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 715 3016 278 94 93 chr5 17052858 17053334 -135483925 - Lx5 LINE L1 -108 6942 6446 8 715 180 0 0 0 chr5 17053334 17053354 -135483905 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 715 3016 278 94 93 chr5 17053354 17053426 -135483833 - Lx5 LINE L1 -605 6445 6441 8 715 417 90 0 0 chr5 17053426 17053493 -135483766 + (CTTG)n Simple_repeat Simple_repeat 1 67 0 9 715 5212 230 132 30 chr5 17053493 17055417 -135481842 - Lx5 LINE L1 -610 6440 4274 8 715 360 43 0 0 chr5 17055417 17055463 -135481796 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 715 27 35 0 50 chr5 17055670 17055730 -135481529 + AT_rich Low_complexity Low_complexity 1 57 0 9 715 225 0 0 0 chr5 17055898 17055923 -135481336 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 9 715 400 295 109 70 chr5 17055927 17056211 -135481048 - MTEa LTR MaLR -58 321 27 9 715 1179 301 92 33 chr5 17056601 17057089 -135480170 - MT2A LTR ERVL -14 519 3 9 715 2647 227 131 53 chr5 17057845 17058772 -135478487 - Lx9 LINE L1 -23 7621 6623 9 715 204 125 0 0 chr5 17059317 17059349 -135477910 + (TAA)n Simple_repeat Simple_repeat 1 32 0 9 715 297 0 0 0 chr5 17059350 17059383 -135477876 + (TTA)n Simple_repeat Simple_repeat 1 33 0 9 715 200 97 32 0 chr5 17059656 17059687 -135477572 + (GAAAA)n Simple_repeat Simple_repeat 1 32 0 9 715 3395 262 54 96 chr5 17060062 17061449 -135475810 + RMER1C Other Other 10 1338 -4 1 715 408 20 0 0 chr5 17062260 17062309 -135474950 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 715 1113 79 0 0 chr5 17064496 17064636 -135472623 + B1_Mm SINE Alu 3 142 -5 1 715 234 0 0 0 chr5 17064640 17064666 -135472593 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 715 198 0 0 0 chr5 17064998 17065020 -135472239 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 715 311 278 11 22 chr5 17066426 17066518 -135470741 + PB1D10 SINE Alu 27 117 0 1 715 408 331 0 41 chr5 17067402 17067525 -135469734 - ID_B1 SINE B4 -5 219 102 1 715 207 80 39 39 chr5 17067630 17067682 -135469577 + GA-rich Low_complexity Low_complexity 2 53 0 1 715 746 344 49 3 chr5 17067832 17068138 -135469121 + Lx9 LINE L1 6474 6793 -851 1 715 188 152 43 0 chr5 17068470 17068516 -135468743 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 1 715 21 0 0 0 chr5 17068648 17068669 -135468590 + AT_rich Low_complexity Low_complexity 1 21 0 1 715 302 329 92 70 chr5 17068751 17069082 -135468177 - MLT1B LTR MaLR -21 369 39 1 715 309 26 0 0 chr5 17069082 17069120 -135468139 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 715 302 329 92 70 chr5 17069120 17069147 -135468112 - MLT1B LTR MaLR -352 38 4 1 715 7598 72 9 1 chr5 17069473 17070619 -135466640 - L1_Mus1 LINE L1 0 6567 5413 1 715 945 71 0 0 chr5 17070897 17071023 -135466236 + (TG)n Simple_repeat Simple_repeat 1 126 0 1 715 360 80 0 0 chr5 17071252 17071302 -135465957 - 5S rRNA rRNA -68 53 4 1 715 3789 45 6 0 chr5 17071303 17071770 -135465489 + L1Md_F2 LINE L1 6110 6579 -3 1 715 25 65 0 0 chr5 17072893 17072939 -135464320 + AT_rich Low_complexity Low_complexity 1 46 0 1 715 37 0 0 0 chr5 17073065 17073102 -135464157 + AT_rich Low_complexity Low_complexity 1 37 0 1 715 2884 59 3 3 chr5 17074206 17074578 -135462681 - L1Md_F2 LINE L1 0 6582 6211 1 715 3228 21 21 3 chr5 17076268 17076655 -135460604 - MTA_Mm LTR MaLR -2 394 1 1 715 263 206 32 0 chr5 17076747 17076810 -135460449 + CT-rich Low_complexity Low_complexity 2 66 0 1 715 261 183 0 0 chr5 17076914 17076974 -135460285 + A-rich Low_complexity Low_complexity 1 60 0 1 715 888 312 108 43 chr5 17078473 17079269 -135457990 - L1MA7 LINE L1 -121 6170 5323 1 715 189 107 0 0 chr5 17082835 17082863 -135454396 + (T)n Simple_repeat Simple_repeat 1 28 0 1 715 336 24 0 0 chr5 17083234 17083275 -135453984 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1 715 253 276 14 86 chr5 17083908 17084047 -135453212 - RMER17D LTR ERVK -374 515 387 1 715 1228 67 11 11 chr5 17084047 17084227 -135453032 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 715 320 244 98 22 chr5 17085029 17085121 -135452138 - B1F1 SINE Alu -6 143 45 1 715 419 296 174 15 chr5 17086205 17087055 -135450204 - L1MD LINE L1 -2782 3364 2375 1 715 37 69 0 0 chr5 17090782 17090854 -135446405 + AT_rich Low_complexity Low_complexity 1 72 0 1 715 524 247 68 0 chr5 17091122 17091312 -135445947 - Lx9 LINE L1 -2 7642 7440 1 715 533 275 47 47 chr5 17091960 17092109 -135445150 + RSINE1 SINE B4 4 152 -13 1 715 661 328 57 8 chr5 17093298 17093562 -135443697 + B4A SINE B4 14 290 -2 1 715 220 323 0 10 chr5 17093563 17093660 -135443599 + (CATATA)n Simple_repeat Simple_repeat 6 101 0 1 715 223 303 11 0 chr5 17094902 17094991 -135442268 - BC1_Mm scRNA scRNA -50 102 13 1 715 250 298 24 0 chr5 17095306 17095390 -135441869 + MER5B DNA MER1_type 1 86 -92 1 715 3630 104 51 5 chr5 17096499 17097050 -135440209 - MT2B2 LTR ERVL -8 576 1 1 715 183 367 54 27 chr5 17098253 17098365 -135438894 + MIRc SINE MIR 103 217 -51 1 715 273 57 0 0 chr5 17099076 17099111 -135438148 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 715 441 54 0 0 chr5 17099914 17099970 -135437289 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 715 461 350 14 0 chr5 17102021 17102164 -135435095 - B1F SINE Alu 0 149 5 1 715 276 103 17 33 chr5 17102230 17102290 -135434969 + CT-rich Low_complexity Low_complexity 2 60 0 1 715 249 57 0 0 chr5 17103245 17103280 -135433979 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 1 715 21 0 0 0 chr5 17104263 17104284 -135432975 + AT_rich Low_complexity Low_complexity 1 21 0 1 715 468 290 28 78 chr5 17104339 17104481 -135432778 + B3 SINE B2 49 183 -15 1 715 397 347 40 45 chr5 17104575 17104777 -135432482 + B4A SINE B4 54 254 -38 1 715 411 303 155 0 chr5 17106006 17106148 -135431111 + RSINE1 SINE B4 2 165 0 1 715 1146 122 0 0 chr5 17106171 17106351 -135430908 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 715 243 0 0 0 chr5 17106414 17106441 -135430818 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 715 326 82 48 16 chr5 17106897 17106959 -135430300 + 4.5SRNA scRNA scRNA 23 86 -8 1 715 831 46 0 0 chr5 17106908 17107017 -135430242 + B1_Mus1 SINE Alu 40 148 0 1 715 22 0 0 0 chr5 17109438 17109460 -135427799 + AT_rich Low_complexity Low_complexity 1 22 0 1 715 256 361 62 59 chr5 17109463 17109635 -135427624 - B3 SINE B2 -6 210 11 1 715 321 275 0 0 chr5 17110580 17110649 -135426610 - Tigger7 DNA MER2_type -2146 345 277 1 715 1933 211 71 2 chr5 17110663 17111057 -135426202 - MTC LTR MaLR 0 421 1 1 715 717 361 11 19 chr5 17111057 17111317 -135425942 - Tigger7 DNA MER2_type -2232 259 2 1 715 606 206 291 0 chr5 17111832 17111997 -135425262 - B3 SINE B2 -3 213 1 1 715 441 0 0 0 chr5 17112713 17112762 -135424497 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 715 726 353 31 31 chr5 17112762 17113019 -135424240 - B4A SINE B4 -23 269 13 1 715 342 0 0 0 chr5 17113511 17113549 -135423710 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 715 477 0 0 0 chr5 17113549 17113601 -135423658 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 715 33788 36 1 0 chr5 17114265 17120538 -135416721 + L1Md_T LINE L1 1 5589 -297 1 715 9023 6 0 0 chr5 17120538 17121534 -135415725 + L1Md_T LINE L1 5590 6585 0 1 715 317 410 0 0 chr5 17121605 17121705 -135415554 - PB1D10 SINE Alu -17 100 1 1 715 28 0 0 0 chr5 17122399 17122427 -135414832 + AT_rich Low_complexity Low_complexity 1 28 0 1 715 450 0 0 0 chr5 17124013 17124063 -135413196 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 715 200 133 67 0 chr5 17124872 17124917 -135412342 + C-rich Low_complexity Low_complexity 6 53 0 1 715 356 292 96 41 chr5 17125581 17125799 -135411460 + Charlie1b DNA MER1_type 104 333 -190 1 715 183 151 241 19 chr5 17125957 17126011 -135411248 + L2a LINE L2 3265 3330 -96 1 715 213 297 157 10 chr5 17126859 17126961 -135410298 + MIRb SINE MIR 83 199 -69 1 715 1656 167 0 108 chr5 17127830 17128199 -135409060 - ORR1A4 LTR MaLR 0 329 1 1 715 36 77 0 0 chr5 17128876 17128954 -135408305 + AT_rich Low_complexity Low_complexity 1 78 0 1 715 180 0 0 0 chr5 17130068 17130088 -135407171 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 715 230 327 87 94 chr5 17130159 17130436 -135406823 + MLT1D LTR MaLR 3 277 -228 1 715 537 245 75 37 chr5 17130441 17130602 -135406657 - MTEa LTR MaLR -8 371 205 1 715 2696 48 0 0 chr5 17131372 17131707 -135405552 + L1Md_F2 LINE L1 6245 6579 -3 1 715 23 68 0 0 chr5 17131709 17131753 -135405506 + AT_rich Low_complexity Low_complexity 1 44 0 1 715 450 136 16 33 chr5 17131861 17131983 -135405276 + (TA)n Simple_repeat Simple_repeat 2 121 0 1 715 333 0 0 0 chr5 17132773 17132810 -135404449 + (A)n Simple_repeat Simple_repeat 1 37 0 1 715 2964 65 31 5 chr5 17133141 17133527 -135403732 - MTA_Mm LTR MaLR 0 396 1 1 715 214 337 90 0 chr5 17133575 17133664 -135403595 + L2a LINE L2 3306 3402 -24 1 715 2779 72 33 10 chr5 17136113 17136504 -135400755 + MTB LTR MaLR 1 400 0 1 715 609 299 68 4 chr5 17136577 17136812 -135400447 - Lx7 LINE L1 -656 7040 6791 1 715 317 24 24 0 chr5 17137307 17137349 -135399910 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 715 989 106 0 27 chr5 17137796 17137809 -135399450 - B1_Mus2 SINE Alu 0 147 138 1 715 180 0 0 0 chr5 17137809 17137829 -135399430 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 715 989 106 0 27 chr5 17137829 17137961 -135399298 - B1_Mus2 SINE Alu -10 137 6 1 715 261 187 62 74 chr5 17137896 17137977 -135399282 - RLTR25A LTR ERVK -433 670 591 1 715 239 304 14 0 chr5 17138828 17138897 -135398362 + ID4 SINE ID 2 71 -12 1 715 1473 45 0 0 chr5 17139067 17139426 -135397833 + (CCA)n Simple_repeat Simple_repeat 1 359 0 1 715 294 125 0 0 chr5 17139426 17139474 -135397785 + (CACCAT)n Simple_repeat Simple_repeat 6 53 0 1 715 351 0 0 0 chr5 17140956 17140995 -135396264 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 715 429 325 70 40 chr5 17141966 17142269 -135394990 - MER47B DNA MER2_type -38 380 37 1 715 3366 87 24 0 chr5 17146383 17146843 -135390416 - L1_Mus3 LINE L1 -4 6634 6164 1 715 362 290 79 18 chr5 17147649 17147814 -135389445 - MIRb SINE MIR -72 196 22 1 715 489 140 76 34 chr5 17150984 17151102 -135386157 - Lx2 LINE L1 0 6997 6875 1 715 360 342 109 10 chr5 17151877 17152069 -135385190 - MTE2b LTR MaLR -2 377 167 1 715 2696 201 31 23 chr5 17152107 17152662 -135384597 + RLTR20B1 LTR ERVK 1 559 -4 1 715 307 264 0 0 chr5 17152663 17152735 -135384524 - MTE2b LTR MaLR -250 129 58 1 715 256 312 54 0 chr5 17152735 17152828 -135384431 - MTE2b LTR MaLR -281 98 1 1 715 214 182 0 0 chr5 17152892 17152936 -135384323 + GA-rich Low_complexity Low_complexity 1 44 0 1 715 228 273 0 0 chr5 17153480 17153535 -135383724 - BLACKJACK DNA AcHobo 0 2944 2890 1 715 3070 111 4 23 chr5 17155699 17156179 -135381080 - L1_Mus3 LINE L1 0 6638 6168 1 715 256 261 40 52 chr5 17157101 17157275 -135379984 + Lx9 LINE L1 7458 7629 -15 1 715 529 261 108 0 chr5 17157326 17157456 -135379803 + MTD LTR MaLR 208 351 -68 2 715 285 109 0 0 chr5 17157463 17157509 -135379750 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 715 714 333 136 18 chr5 17158627 17159368 -135377891 - Lx8 LINE L1 -48 7596 6628 2 715 201 39 0 0 chr5 17159802 17159828 -135377431 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 715 348 202 12 37 chr5 17160901 17160973 -135376286 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 715 182 91 0 29 chr5 17160973 17161007 -135376252 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 715 348 202 12 37 chr5 17161007 17161098 -135376161 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 715 397 236 0 11 chr5 17162255 17162345 -135374914 + URR1B DNA MER1_type 135 223 -2 2 715 249 33 0 0 chr5 17163542 17163572 -135373687 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 715 269 346 19 9 chr5 17163683 17163788 -135373471 + ORR1E LTR MaLR 1 106 -253 2 715 246 62 0 0 chr5 17163952 17163984 -135373275 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 715 287 175 17 17 chr5 17164002 17164060 -135373199 - Lx9 LINE L1 -1154 6490 6440 2 715 402 108 0 0 chr5 17164147 17164212 -135373047 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 715 22 70 0 0 chr5 17164296 17164339 -135372920 + AT_rich Low_complexity Low_complexity 1 43 0 2 715 457 304 16 73 chr5 17164807 17165001 -135372258 - B3A SINE B2 0 216 1 2 715 437 0 19 0 chr5 17166313 17166366 -135370893 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 715 390 21 0 0 chr5 17167304 17167351 -135369908 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 715 405 0 0 0 chr5 17167380 17167425 -135369834 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 2 715 203 184 0 0 chr5 17167486 17167524 -135369735 + T-rich Low_complexity Low_complexity 1 38 0 2 715 278 363 11 0 chr5 17167524 17167615 -135369644 - RSINE1 SINE B4 -69 96 5 2 715 751 359 10 61 chr5 17167711 17168005 -135369254 + B4A SINE B4 12 290 -2 2 715 286 42 42 0 chr5 17168166 17168214 -135369045 + (TTG)n Simple_repeat Simple_repeat 2 51 0 2 89 948 271 60 21 chr5 17170093 17170526 -135366733 - L1M2 LINE L1 -1376 4767 4318 2 716 366 76 114 0 chr5 17170595 17170674 -135366585 + L1_Mus4 LINE L1 6542 6629 -7 2 716 590 194 108 36 chr5 17170747 17170886 -135366373 - MTE2a LTR MaLR 0 379 231 2 716 245 231 37 37 chr5 17171801 17171909 -135365350 - Lx9 LINE L1 -5 7639 7532 2 716 29 0 0 0 chr5 17171991 17172020 -135365239 + AT_rich Low_complexity Low_complexity 1 29 0 2 716 18875 157 30 14 chr5 17172024 17175606 -135361653 - L1_Mur1 LINE L1 -702 5184 1544 2 716 26 0 0 0 chr5 17176180 17176206 -135361053 + AT_rich Low_complexity Low_complexity 1 26 0 2 716 447 68 0 0 chr5 17176730 17176789 -135360470 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 716 264 305 9 9 chr5 17177548 17177654 -135359605 + (TA)n Simple_repeat Simple_repeat 2 107 0 2 716 23 0 0 0 chr5 17178407 17178430 -135358829 + AT_rich Low_complexity Low_complexity 1 23 0 2 716 340 252 80 18 chr5 17178711 17178824 -135358435 - Lx5 LINE L1 -3 7047 6928 2 716 1415 200 44 27 chr5 17178892 17179185 -135358074 - Lx5 LINE L1 -139 6911 6614 2 716 2770 55 6 0 chr5 17179197 17179541 -135357718 - ORR1A1 LTR MaLR 0 346 1 2 716 319 162 12 12 chr5 17180063 17180144 -135357115 + CT-rich Low_complexity Low_complexity 3 83 0 2 716 1544 198 53 76 chr5 17180183 17180669 -135356590 - Lx7 LINE L1 -4 7692 7218 2 716 34 65 0 0 chr5 17182513 17182575 -135354684 + AT_rich Low_complexity Low_complexity 1 62 0 2 716 3011 50 5 33 chr5 17182688 17183085 -135354174 - RLTR10 LTR ERVK -2 388 3 2 716 25 0 0 0 chr5 17183694 17183719 -135353540 + AT_rich Low_complexity Low_complexity 1 25 0 2 716 33 0 0 0 chr5 17184531 17184564 -135352695 + AT_rich Low_complexity Low_complexity 1 33 0 2 716 21 36 0 0 chr5 17184670 17184698 -135352561 + AT_rich Low_complexity Low_complexity 1 28 0 2 716 641 311 40 60 chr5 17185739 17186037 -135351222 - B4 SINE B4 0 292 1 2 716 1358 183 50 31 chr5 17186262 17186583 -135350676 - Lx7 LINE L1 0 7696 7370 2 716 28 29 0 0 chr5 17186633 17186668 -135350591 + AT_rich Low_complexity Low_complexity 1 35 0 2 716 2047 231 69 8 chr5 17186670 17187193 -135350066 - Lx7 LINE L1 -338 7358 6804 2 716 279 0 0 0 chr5 17187522 17187553 -135349706 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 716 504 324 14 7 chr5 17187553 17187696 -135349563 - RSINE1 SINE B4 -10 155 12 2 716 2796 18 2 227 chr5 17187969 17188472 -135348787 + RLTR10 LTR ERVK 1 390 0 2 716 8012 50 8 8 chr5 17188473 17189486 -135347773 + RLTR10-int LTR ERVK 9 998 -989 2 716 366 258 39 15 chr5 17189550 17189680 -135347579 + RLTR10-int LTR ERVK 1462 1594 -5987 2 716 8810 18 0 0 chr5 17189763 17190756 -135346503 + RLTR10-int LTR ERVK 992 1984 -3 2 716 2796 18 2 227 chr5 17190758 17191261 -135345998 + RLTR10 LTR ERVK 1 390 0 2 716 180 0 0 0 chr5 17191534 17191554 -135345705 + (CATG)n Simple_repeat Simple_repeat 3 22 0 2 716 657 255 0 32 chr5 17191580 17191734 -135345525 - B1_Mur1 SINE Alu 0 149 1 2 716 24 0 0 0 chr5 17191753 17191777 -135345482 + AT_rich Low_complexity Low_complexity 1 24 0 2 716 775 250 97 0 chr5 17192015 17192211 -135345048 + B3 SINE B2 1 215 -1 2 716 883 258 11 0 chr5 17192226 17192416 -135344843 + B3 SINE B2 2 193 -23 2 716 402 133 13 0 chr5 17192565 17192640 -135344619 - B1_Mur4 SINE Alu -1 149 74 2 716 654 301 106 30 chr5 17192778 17193240 -135344019 + L1M2 LINE L1 3239 3735 -2408 2 716 1729 269 39 11 chr5 17193254 17193717 -135343542 - Lx6 LINE L1 -26 7434 6959 2 716 342 0 0 0 chr5 17193960 17193998 -135343261 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 716 326 177 101 88 chr5 17195955 17196172 -135341087 - Lx9 LINE L1 -7 7637 7418 2 716 450 0 0 0 chr5 17196178 17196228 -135341031 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 716 319 253 152 0 chr5 17196251 17196330 -135340929 - RSINE1 SINE B4 -62 103 13 2 716 734 334 29 59 chr5 17197194 17197688 -135339571 - Lx9 LINE L1 -385 7259 6627 2 716 486 270 8 60 chr5 17198143 17198266 -135338993 + RSINE1 SINE B4 2 118 -47 2 716 618 14 0 0 chr5 17198266 17198337 -135338922 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 716 2212 36 7 11 chr5 17198478 17198759 -135338500 - L1Md_F3 LINE L1 -2 6582 6303 2 716 443 233 23 0 chr5 17198821 17198954 -135338305 + Lx9 LINE L1 7508 7643 -1 2 716 342 147 0 0 chr5 17199473 17199541 -135337718 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 716 193 376 75 8 chr5 17200787 17200921 -135336338 + MIR SINE MIR 82 224 -38 2 716 490 235 129 24 chr5 17201290 17201460 -135335799 + MER5A DNA MER1_type 1 188 -1 2 716 239 264 28 0 chr5 17201507 17201579 -135335680 - L1M2 LINE L1 -415 5897 5824 2 716 21 0 0 0 chr5 17203936 17203957 -135333302 + AT_rich Low_complexity Low_complexity 1 21 0 2 716 270 0 0 0 chr5 17204323 17204353 -135332906 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 716 290 375 72 24 chr5 17207052 17207215 -135330044 + MLT1D LTR MaLR 9 177 -328 2 716 708 12 0 0 chr5 17207215 17207296 -135329963 + (GAAA)n Simple_repeat Simple_repeat 3 83 0 2 716 290 375 72 24 chr5 17207296 17207463 -135329796 + MLT1D LTR MaLR 178 354 -151 2 716 21 0 0 0 chr5 17208319 17208340 -135328919 + AT_rich Low_complexity Low_complexity 1 21 0 2 716 378 61 0 0 chr5 17208379 17208428 -135328831 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 716 421 354 29 44 chr5 17209412 17209616 -135327643 - B4A SINE B4 0 292 92 2 716 22 0 0 0 chr5 17209619 17209641 -135327618 + GC_rich Low_complexity Low_complexity 1 22 0 2 716 196 77 51 0 chr5 17209677 17209716 -135327543 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 2 716 219 349 38 0 chr5 17209907 17210013 -135327246 - MIRc SINE MIR -31 237 128 2 716 229 130 22 0 chr5 17210597 17210643 -135326616 + T-rich Low_complexity Low_complexity 2 48 0 2 716 391 35 35 0 chr5 17211030 17211087 -135326172 + (TAA)n Simple_repeat Simple_repeat 1 59 0 2 716 235 401 116 16 chr5 17211098 17211227 -135326032 + RSINE1 SINE B4 2 143 -22 2 716 180 291 57 28 chr5 17213138 17213244 -135324015 + L3 LINE CR1 16 124 -4365 2 716 267 156 0 0 chr5 17214944 17214989 -135322270 - L1MA8 LINE L1 -57 6234 6190 2 716 230 314 12 0 chr5 17215212 17215298 -135321961 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 716 429 54 0 0 chr5 17216864 17216920 -135320339 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 716 204 255 21 0 chr5 17220943 17220990 -135316269 + MIRm SINE MIR 99 146 -130 2 716 21 82 0 0 chr5 17223072 17223121 -135314138 + AT_rich Low_complexity Low_complexity 1 49 0 2 716 1010 52 89 0 chr5 17226900 17227035 -135310224 + B1_Mm SINE Alu 1 147 0 2 716 361 296 25 38 chr5 17229235 17229393 -135307866 - MIRb SINE MIR -104 164 9 2 716 423 0 0 0 chr5 17229487 17229534 -135307725 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 716 389 257 59 10 chr5 17231130 17231232 -135306027 + B3A SINE B2 42 148 -50 2 716 405 0 0 0 chr5 17231703 17231748 -135305511 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 716 334 0 43 0 chr5 17231900 17231946 -135305313 + (CAAAAA)n Simple_repeat Simple_repeat 6 53 0 2 716 1381 161 5 5 chr5 17232010 17232234 -135305025 - MTC LTR MaLR 0 421 198 2 716 1105 300 11 40 chr5 17232346 17232700 -135304559 - Lx6 LINE L1 -27 7433 7090 2 716 963 192 100 10 chr5 17232706 17232906 -135304353 - MTC LTR MaLR -203 218 1 2 716 212 185 0 71 chr5 17234932 17235002 -135302257 + T-rich Low_complexity Low_complexity 2 66 0 2 716 285 268 0 0 chr5 17235139 17235195 -135302064 + tRNA-Ala-GCY_ tRNA tRNA 2 57 -18 2 716 302 286 9 18 chr5 17235197 17235311 -135301948 + GA-rich Low_complexity Low_complexity 4 116 0 2 716 635 140 7 0 chr5 17238356 17238499 -135298760 + (TAGA)n Simple_repeat Simple_repeat 4 147 0 2 716 2328 131 18 26 chr5 17238499 17238968 -135298291 + RMER17A LTR ERVK 2 481 -328 2 716 270 136 0 0 chr5 17238968 17239012 -135298247 + (TCC)n Simple_repeat Simple_repeat 3 46 0 3 716 351 284 10 31 chr5 17239012 17239110 -135298149 - B3 SINE B2 -120 96 1 3 716 300 53 0 0 chr5 17239403 17239441 -135297818 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 3 716 539 222 47 85 chr5 17239442 17239734 -135297525 - Lx5 LINE L1 -19 7039 6683 3 716 671 216 59 4 chr5 17239718 17239875 -135297384 - L1_Mur2 LINE L1 -3656 2230 2062 3 716 441 0 0 0 chr5 17239875 17239924 -135297335 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 716 439 315 49 101 chr5 17239924 17240094 -135297165 - L1_Mur2 LINE L1 -3815 2071 1920 3 716 2338 170 13 34 chr5 17240087 17240665 -135296594 - L1_Mur2 LINE L1 -4128 1749 1179 3 716 270 0 0 0 chr5 17240665 17240695 -135296564 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 716 504 0 0 0 chr5 17240696 17240752 -135296507 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 716 528 269 67 50 chr5 17240752 17240874 -135296385 - L1_Mur2 LINE L1 -6550 1178 1042 3 716 1050 292 62 14 chr5 17240992 17241103 -135296156 - Lx5 LINE L1 -88 6962 6850 3 716 2470 181 129 29 chr5 17241103 17241730 -135295529 - RMER6C LTR ERVK 0 690 1 3 716 1050 292 62 14 chr5 17241730 17241910 -135295349 - Lx5 LINE L1 -201 6849 6657 3 716 697 318 71 0 chr5 17244180 17244447 -135292812 + MER73 LTR ERVL 3 288 -356 3 716 337 343 75 48 chr5 17244500 17244727 -135292532 + MER73 LTR ERVL 409 641 -3 3 716 187 209 0 52 chr5 17245572 17245632 -135291627 - MIR SINE MIR -65 143 86 3 716 306 0 0 0 chr5 17246929 17246963 -135290296 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 3 716 658 208 53 7 chr5 17246975 17247125 -135290134 + B2_Mm2 SINE B2 5 161 -34 3 716 351 0 0 0 chr5 17247126 17247165 -135290094 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 3 716 407 194 77 10 chr5 17247165 17247269 -135289990 + B2_Mm2 SINE B2 51 161 -34 3 716 189 0 0 0 chr5 17247270 17247291 -135289968 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 3 716 604 162 30 177 chr5 17247317 17247520 -135289739 + B2_Mm2 SINE B2 5 177 -18 3 716 484 322 56 47 chr5 17248741 17249416 -135287843 - L1MA5A LINE L1 -476 5827 5119 3 716 308 309 7 7 chr5 17249438 17249578 -135287681 - L1MA5A LINE L1 -1098 5045 4906 3 716 324 0 0 0 chr5 17249645 17249681 -135287578 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 716 189 171 0 0 chr5 17251056 17251091 -135286168 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 3 716 282 152 0 0 chr5 17251745 17251804 -135285455 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 716 681 13 0 0 chr5 17252912 17252990 -135284269 + (TTTC)n Simple_repeat Simple_repeat 1 78 0 3 716 855 29 0 0 chr5 17253546 17253648 -135283611 + (GAAA)n Simple_repeat Simple_repeat 1 102 0 3 716 225 0 0 0 chr5 17253708 17253733 -135283526 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 716 186 43 0 0 chr5 17254146 17254169 -135283090 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 716 240 286 0 0 chr5 17255082 17255194 -135282065 + (CA)n Simple_repeat Simple_repeat 1 112 0 3 716 346 301 22 36 chr5 17255208 17255346 -135281913 + HAL1-3A_ME LINE L1 1975 2110 -748 3 716 272 194 48 0 chr5 17255503 17255565 -135281694 - L1MB8 LINE L1 -40 6138 6074 3 716 1830 199 54 56 chr5 17255565 17256012 -135281247 + RLTR41 LTR ERV1 1 446 0 3 716 209 196 0 18 chr5 17256191 17256248 -135281011 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 3 716 2296 155 39 51 chr5 17256906 17257252 -135280007 - RLTR23 LTR ERV1 0 430 88 3 716 4823 151 39 48 chr5 17257252 17258168 -135279091 - RMER13B LTR ERVK 0 908 1 3 716 2296 155 39 51 chr5 17258168 17258256 -135279003 - RLTR23 LTR ERV1 -343 87 1 3 716 26 0 0 0 chr5 17258465 17258491 -135278768 + AT_rich Low_complexity Low_complexity 1 26 0 3 716 21 0 0 0 chr5 17260419 17260440 -135276819 + AT_rich Low_complexity Low_complexity 1 21 0 3 716 287 215 74 25 chr5 17260491 17260572 -135276687 - L1MB1 LINE L1 -296 5893 5809 3 716 527 281 100 15 chr5 17260782 17261341 -135275918 - L1MA4 LINE L1 -26 6274 5642 3 716 348 24 0 0 chr5 17261346 17261387 -135275872 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 716 6446 175 88 16 chr5 17261390 17262725 -135274534 - Lx4A LINE L1 -7 7051 5620 3 716 4857 128 13 91 chr5 17262722 17263698 -135273561 - L1_Mur2 LINE L1 -1317 4560 3661 3 716 25 31 0 0 chr5 17263737 17263769 -135273490 + AT_rich Low_complexity Low_complexity 1 32 0 3 716 21 82 0 0 chr5 17263792 17263841 -135273418 + AT_rich Low_complexity Low_complexity 1 49 0 3 716 1175 264 143 28 chr5 17263868 17264559 -135272700 - L1MA4 LINE L1 -1812 4328 3537 3 716 279 354 73 29 chr5 17264561 17264765 -135272494 - MIR SINE MIR -27 235 23 3 716 327 25 0 0 chr5 17265825 17265865 -135271394 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 716 417 247 0 11 chr5 17265866 17265956 -135271303 - RSINE1 SINE B4 -34 131 43 3 716 188 397 39 20 chr5 17266123 17266326 -135270933 + L2 LINE L2 2118 2324 -1095 3 716 445 125 0 22 chr5 17267441 17267531 -135269728 + (TA)n Simple_repeat Simple_repeat 1 88 0 3 716 357 24 0 0 chr5 17267531 17267573 -135269686 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 716 3681 150 68 21 chr5 17268500 17269160 -135268099 - RLTR17 LTR ERVK 0 692 2 3 716 203 186 16 33 chr5 17269161 17269222 -135268037 + (TTATA)n Simple_repeat Simple_repeat 5 64 0 3 716 525 360 35 32 chr5 17269705 17269989 -135267270 + MLT1A LTR MaLR 32 316 -58 3 716 2346 161 106 48 chr5 17270795 17271331 -135265928 - RMER2 LTR ERV1 0 567 1 3 716 215 95 0 45 chr5 17271724 17271768 -135265491 + (GAAAA)n Simple_repeat Simple_repeat 2 43 0 3 716 326 348 134 20 chr5 17272320 17272619 -135264640 - L1MD LINE L1 -2876 3270 2938 3 716 1272 97 5 21 chr5 17272852 17273042 -135264217 - B2_Mm1t SINE B2 -5 188 2 3 716 22 0 0 54 chr5 17273049 17273068 -135264191 + AT_rich Low_complexity Low_complexity 1 19 0 3 716 609 27 0 0 chr5 17273068 17273143 -135264116 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 3 716 1036 110 0 0 chr5 17273143 17273288 -135263971 - B1_Mus1 SINE Alu -3 145 1 3 716 22 0 0 54 chr5 17273288 17273304 -135263955 + AT_rich Low_complexity Low_complexity 1 15 0 3 716 289 311 46 46 chr5 17273317 17273462 -135263797 - L1M2a LINE L1 -3422 3742 3597 3 716 326 107 0 18 chr5 17273462 17273519 -135263740 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 716 289 311 46 46 chr5 17273519 17273589 -135263670 - L1M2a LINE L1 -3568 3596 3527 3 716 257 401 68 21 chr5 17274147 17274486 -135262773 - L1M2a LINE L1 -6618 550 196 3 716 525 16 0 0 chr5 17274520 17274582 -135262677 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 716 385 354 88 37 chr5 17274758 17275054 -135262205 - ORR1E LTR MaLR -48 311 1 3 716 1110 118 0 0 chr5 17276093 17276263 -135260996 + (TTC)n Simple_repeat Simple_repeat 3 172 0 3 716 462 18 0 0 chr5 17276607 17276662 -135260597 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 716 235 179 94 12 chr5 17276859 17276944 -135260315 - L1M2 LINE L1 -509 5791 5700 3 716 461 17 17 0 chr5 17278220 17278278 -135258981 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 3 716 362 214 0 14 chr5 17278924 17278995 -135258264 - MER5A1 DNA MER1_type -76 90 21 3 716 2506 112 0 3 chr5 17279842 17280226 -135257033 - L1_Mm LINE L1 -2225 3658 3276 3 716 699 271 40 106 chr5 17280333 17280606 -135256653 + LTRIS4 LTR ERV1 265 519 0 3 716 307 268 51 87 chr5 17280673 17280869 -135256390 + MuRRS4-int LTR ERV1 77 265 -7513 3 716 1273 240 59 8 chr5 17281340 17281663 -135255596 + MuRRS4-int LTR ERV1 374 682 -6924 3 716 4499 121 42 15 chr5 17281698 17282428 -135254831 + RMER16-int LTR ERVK 678 1427 -3979 3 716 343 123 0 58 chr5 17282420 17282489 -135254770 + MuRRS4-int LTR ERV1 734 798 -4265 3 716 694 126 45 0 chr5 17282522 17282633 -135254626 - LSU-rRNA_Hsa rRNA rRNA -1365 3670 3555 3 716 1164 258 14 7 chr5 17282702 17282999 -135254260 + MuRRS4-int LTR ERV1 1000 1298 -3765 3 716 434 173 55 46 chr5 17283000 17283109 -135254150 + MURVY-LTR LTR ERV1 410 519 0 3 716 4922 99 19 0 chr5 17283109 17283839 -135253420 - MusHAL1 LINE L1 -637 2075 1332 3 716 1948 173 67 26 chr5 17283840 17284231 -135253028 - RLTR9B2 LTR ERVK -13 407 1 3 716 339 130 68 68 chr5 17284232 17284306 -135252953 - ETnERV2-int LTR ERVK -2 7404 7331 3 716 1548 148 127 30 chr5 17284517 17284887 -135252372 + RLTR9E LTR ERVK 1 406 -3 3 716 260 237 26 0 chr5 17284891 17284967 -135252292 - ETnERV2-int LTR ERVK -992 6414 6337 3 716 737 191 52 29 chr5 17284967 17285140 -135252119 + RLTR9B2 LTR ERVK 156 332 -88 3 716 880 144 42 58 chr5 17285140 17285331 -135251928 + B2_Mm2 SINE B2 1 188 -7 3 716 530 150 0 20 chr5 17285332 17285434 -135251825 + GA-rich Low_complexity Low_complexity 4 103 0 3 716 504 200 0 0 chr5 17285434 17285534 -135251725 + RLTR9B2 LTR ERVK 338 437 0 3 716 2958 139 25 4 chr5 17285536 17286026 -135251233 + Lx LINE L1 6151 6650 -4 3 716 846 167 14 56 chr5 17286034 17286250 -135251009 - L1_Mur3 LINE L1 -4333 1547 1341 3 716 559 318 81 9 chr5 17286870 17287092 -135250167 - L1M3e LINE L1 -6711 319 82 3 716 617 151 90 53 chr5 17287316 17287449 -135249810 + B1_Mur3 SINE Alu 12 149 0 3 716 216 111 0 0 chr5 17287449 17287485 -135249774 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 3 716 414 339 28 6 chr5 17287604 17287785 -135249474 - B3 SINE B2 -30 186 2 3 716 187 29 27 54 chr5 17288522 17288559 -135248700 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 3 716 23 33 0 0 chr5 17288976 17289006 -135248253 + AT_rich Low_complexity Low_complexity 1 30 0 3 716 192 77 0 0 chr5 17289014 17289040 -135248219 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 716 196 130 43 0 chr5 17289228 17289274 -135247985 + (CATAT)n Simple_repeat Simple_repeat 5 52 0 3 716 374 227 220 28 chr5 17290131 17290308 -135246951 - B3 SINE B2 -4 212 2 3 716 207 0 0 0 chr5 17291009 17291032 -135246227 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 3 716 52 17 0 0 chr5 17291248 17291307 -135245952 + AT_rich Low_complexity Low_complexity 1 59 0 3 716 329 273 0 118 chr5 17291940 17292110 -135245149 - HAL1-2a_MD LINE L1 -525 2499 2350 3 716 251 291 86 70 chr5 17292146 17292563 -135244696 + RMER1C Other Other 399 822 -520 3 716 433 277 0 0 chr5 17292720 17292897 -135244362 + (CTG)n Simple_repeat Simple_repeat 3 179 0 3 716 195 217 22 0 chr5 17294255 17294301 -135242958 - L3b LINE CR1 -364 118 72 3 716 438 127 0 0 chr5 17294360 17294431 -135242828 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 716 261 0 0 0 chr5 17294431 17294459 -135242800 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 716 213 39 0 0 chr5 17294894 17294920 -135242339 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 716 32004 84 8 7 chr5 17294992 17300194 -135237065 + L1Md_F2 LINE L1 381 5586 -297 4 716 7367 82 0 18 chr5 17300194 17301208 -135236051 + L1Md_F2 LINE L1 5587 6582 0 4 717 21 0 0 0 chr5 17301564 17301585 -135235674 + AT_rich Low_complexity Low_complexity 1 21 0 4 717 1152 68 7 0 chr5 17301640 17301786 -135235473 + B1_Mus2 SINE Alu 1 147 0 4 717 324 0 0 0 chr5 17302542 17302578 -135234681 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 717 205 189 0 0 chr5 17302585 17302622 -135234637 + GA-rich Low_complexity Low_complexity 2 38 0 4 717 279 302 67 25 chr5 17304388 17304497 -135232762 + MTD LTR MaLR 1 114 -305 4 717 552 227 52 7 chr5 17304497 17304644 -135232615 + ORR1C1 LTR MaLR 1 153 -221 4 717 1156 178 74 4 chr5 17304650 17304892 -135232367 + ORR1C1-int LTR MaLR 1 259 -1250 4 717 35378 35 1 0 chr5 17304911 17310827 -135226432 + L1Md_T LINE L1 1 5589 -297 4 717 8728 5 13 0 chr5 17310827 17311832 -135225427 + L1Md_T LINE L1 5590 6585 0 4 717 2840 251 93 35 chr5 17311832 17312711 -135224548 + ORR1C1-int LTR MaLR 295 1224 -146 4 717 2133 277 213 35 chr5 17312711 17313542 -135223717 + RMER1A Other Other 52 1030 0 4 717 676 168 22 22 chr5 17313551 17313684 -135223575 + ORR1C1-int LTR MaLR 1372 1504 -5 4 717 1652 191 69 6 chr5 17313684 17314032 -135223227 + ORR1C1 LTR MaLR 1 370 -8 4 717 469 297 0 82 chr5 17314043 17314201 -135223058 + MTC LTR MaLR 117 261 -160 4 717 372 43 0 0 chr5 17314201 17314247 -135223012 + (A)n Simple_repeat Simple_repeat 1 46 0 4 717 226 226 129 0 chr5 17314247 17314309 -135222950 + MTC LTR MaLR 294 363 -56 4 717 1142 83 0 0 chr5 17314310 17314455 -135222804 + B1_Mus1 SINE Alu 2 146 -2 4 717 23 0 0 0 chr5 17314770 17314793 -135222466 + AT_rich Low_complexity Low_complexity 1 23 0 4 717 779 369 7 21 chr5 17315368 17315653 -135221606 - B4 SINE B4 -6 286 6 4 717 251 0 59 0 chr5 17318561 17318595 -135218664 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 4 717 390 85 0 0 chr5 17318641 17318700 -135218559 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 717 993 41 0 0 chr5 17318700 17318822 -135218437 + (CA)n Simple_repeat Simple_repeat 1 122 0 4 717 47 92 0 0 chr5 17319639 17319770 -135217489 + AT_rich Low_complexity Low_complexity 1 131 0 4 717 1106 56 0 0 chr5 17321330 17321473 -135215786 - B1_Mus1 SINE Alu -5 143 1 4 717 204 158 35 17 chr5 17322952 17323010 -135214249 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 717 27 49 0 0 chr5 17323181 17323222 -135214037 + AT_rich Low_complexity Low_complexity 1 41 0 4 717 21 0 0 0 chr5 17323281 17323302 -135213957 + AT_rich Low_complexity Low_complexity 1 21 0 4 717 394 100 0 32 chr5 17323883 17323945 -135213314 + B1_Mus1 SINE Alu 1 60 -88 4 717 276 192 68 14 chr5 17323945 17323956 -135213303 + ID_B1 SINE B4 82 158 -66 4 717 524 215 38 0 chr5 17323956 17324274 -135212985 + (CAGG)n Simple_repeat Simple_repeat 1 330 0 4 717 213 39 0 0 chr5 17324313 17324339 -135212920 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 717 4811 31 2 3 chr5 17324347 17324924 -135212335 - L1Md_F2 LINE L1 -14 6568 5993 4 717 3097 36 0 0 chr5 17324932 17325295 -135211964 + L1Md_F2 LINE L1 5587 5949 -633 4 717 727 98 0 16 chr5 17325295 17325420 -135211839 + B1_Mus1 SINE Alu 19 143 -5 4 717 182 291 55 0 chr5 17325518 17325573 -135211686 - MER5A DNA MER1_type -2 187 130 4 717 1653 29 5 0 chr5 17325793 17325997 -135211262 - L1Md_F2 LINE L1 -1 6581 6377 4 717 234 91 0 0 chr5 17326818 17326851 -135210408 + (CAA)n Simple_repeat Simple_repeat 1 33 0 4 717 377 81 16 0 chr5 17327095 17327157 -135210102 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 717 187 371 20 10 chr5 17327269 17327367 -135209892 + MIR3 SINE MIR 81 179 -29 4 717 1019 104 0 0 chr5 17328286 17328421 -135208838 + B1_Mus1 SINE Alu 4 138 -10 4 717 624 38 0 0 chr5 17328422 17328501 -135208758 + (GA)n Simple_repeat Simple_repeat 2 80 0 4 717 201 358 0 15 chr5 17328860 17328928 -135208331 + MIR SINE MIR 82 148 -114 4 717 465 287 47 157 chr5 17328969 17329333 -135207926 + Lx8 LINE L1 6628 6951 -522 4 717 234 170 0 0 chr5 17329584 17329631 -135207628 + Lx8 LINE L1 7416 7462 -11 4 717 1161 88 0 0 chr5 17329856 17330004 -135207255 + B1_Mus1 SINE Alu 1 148 0 4 717 184 0 0 88 chr5 17330004 17330038 -135207221 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 4 717 517 375 48 22 chr5 17330213 17330483 -135206776 - B4 SINE B4 -6 286 10 4 717 192 40 0 0 chr5 17330590 17330615 -135206644 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 4 717 210 105 0 0 chr5 17330609 17330647 -135206612 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 4 717 720 35 0 0 chr5 17331607 17331694 -135205565 + (TC)n Simple_repeat Simple_repeat 1 87 0 4 717 1057 251 58 48 chr5 17331742 17332118 -135205141 - Lx7 LINE L1 -334 7362 6983 4 717 393 161 103 0 chr5 17332115 17332202 -135205057 - Lx7 LINE L1 -616 7080 6985 4 717 207 73 48 24 chr5 17332977 17333019 -135204240 + (TA)n Simple_repeat Simple_repeat 1 43 0 4 717 1203 48 0 0 chr5 17333198 17333345 -135203914 - B1_Mus2 SINE Alu 0 147 1 4 717 198 0 0 0 chr5 17333990 17334012 -135203247 + (TTTTTG)n Simple_repeat Simple_repeat 5 26 0 4 717 326 297 99 0 chr5 17336861 17336962 -135200297 + RSINE1 SINE B4 2 112 -53 4 717 438 20 0 0 chr5 17336966 17337017 -135200242 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 717 1834 209 134 56 chr5 17338893 17339533 -135197726 - RMER6C LTR ERVK 0 690 1 4 717 21 0 0 0 chr5 17340549 17340570 -135196689 + AT_rich Low_complexity Low_complexity 1 21 0 4 717 1491 123 8 0 chr5 17343310 17343545 -135193714 - L1_Mus3 LINE L1 0 6638 6402 4 717 645 259 119 50 chr5 17343704 17343964 -135193295 - B4 SINE B4 -14 278 1 4 717 1121 292 15 15 chr5 17344972 17345306 -135191953 + Lx5 LINE L1 6717 7050 0 4 717 22 70 0 0 chr5 17345918 17345961 -135191298 + AT_rich Low_complexity Low_complexity 1 43 0 4 717 303 371 33 13 chr5 17346146 17346299 -135190960 + RSINE1 SINE B4 3 158 -7 4 717 207 0 0 0 chr5 17347499 17347522 -135189737 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 717 227 106 43 0 chr5 17347522 17347569 -135189690 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 4 717 714 314 16 21 chr5 17348356 17348548 -135188711 + B3 SINE B2 1 191 -25 4 717 438 108 0 0 chr5 17348801 17348866 -135188393 + (TTA)n Simple_repeat Simple_repeat 2 66 0 4 717 942 152 0 0 chr5 17348880 17349018 -135188241 - B1_Mur4 SINE Alu -8 142 5 4 717 419 252 7 44 chr5 17350526 17350663 -135186596 - ID_B1 SINE B4 -9 215 84 4 717 737 32 0 0 chr5 17350569 17350664 -135186595 - B1_Mus1 SINE Alu -52 96 2 4 717 646 325 15 30 chr5 17350665 17350865 -135186394 - B4A SINE B4 -82 210 14 4 717 229 130 22 0 chr5 17350942 17350988 -135186271 + T-rich Low_complexity Low_complexity 1 47 0 4 717 183 129 0 0 chr5 17351459 17351490 -135185769 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 717 633 242 7 26 chr5 17351794 17351947 -135185312 + B1_Mur4 SINE Alu 1 150 0 4 717 301 169 13 66 chr5 17352032 17352108 -135185151 + Lx6 LINE L1 7371 7442 -18 4 717 217 68 45 0 chr5 17352108 17352152 -135185107 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 4 717 704 212 14 7 chr5 17352157 17352304 -135184955 - B1_Mus1 SINE Alu 0 148 1 4 717 247 270 42 67 chr5 17353273 17353392 -135183867 - RMER12 LTR ERVK -477 845 730 4 717 503 171 9 0 chr5 17354943 17355048 -135182211 + (TAGA)n Simple_repeat Simple_repeat 3 108 0 4 717 474 18 0 0 chr5 17355102 17355157 -135182102 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 4 717 810 0 0 0 chr5 17355758 17355848 -135181411 + (GGAAA)n Simple_repeat Simple_repeat 5 94 0 4 717 486 0 0 0 chr5 17355850 17355904 -135181355 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 717 2560 171 87 29 chr5 17356037 17356147 -135181112 - RMER1A Other Other -10 1020 910 4 717 555 66 0 0 chr5 17356147 17356223 -135181036 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 717 2560 171 87 29 chr5 17356223 17356630 -135180629 - RMER1A Other Other -121 909 474 4 717 1952 129 45 6 chr5 17357768 17358080 -135179179 + ORR1A3 LTR MaLR 3 326 0 4 717 675 159 0 0 chr5 17358850 17358982 -135178277 + A-rich Low_complexity Low_complexity 2 133 0 4 717 303 49 0 0 chr5 17359913 17359954 -135177305 + (A)n Simple_repeat Simple_repeat 1 41 0 4 717 406 269 45 40 chr5 17361136 17361487 -135175772 - IAPEz-int LTR ERVK -2839 3642 3522 4 717 1398 278 41 62 chr5 17363724 17364889 -135172370 - RMER1B Other Other -483 583 1 4 717 1985 182 42 0 chr5 17365221 17365599 -135171660 - ORR1B1 LTR MaLR 0 394 1 4 717 296 157 22 0 chr5 17365785 17365874 -135171385 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 4 717 425 320 12 66 chr5 17366721 17366888 -135170371 + ID_B1 SINE B4 1 158 -66 4 717 435 19 0 0 chr5 17366925 17366977 -135170282 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 4 717 450 0 0 0 chr5 17366977 17367026 -135170233 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 717 225 65 0 0 chr5 17368608 17368639 -135168620 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 717 1942 153 3 59 chr5 17370887 17371228 -135166031 + ORR1A2 LTR MaLR 6 327 0 4 717 342 67 0 0 chr5 17371280 17371325 -135165934 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 717 36 23 0 0 chr5 17372307 17372350 -135164909 + AT_rich Low_complexity Low_complexity 1 43 0 4 717 29 90 0 0 chr5 17372705 17372783 -135164476 + AT_rich Low_complexity Low_complexity 1 78 0 4 717 743 200 13 52 chr5 17372880 17373033 -135164226 + B1_Mur3 SINE Alu 3 149 0 4 717 321 26 0 0 chr5 17373112 17373150 -135164109 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 717 201 182 0 22 chr5 17373337 17373382 -135163877 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 4 717 3956 227 57 13 chr5 17373382 17374283 -135162976 - Lx6 LINE L1 -176 7284 6345 4 717 234 310 59 12 chr5 17374426 17374511 -135162748 + RLTR22_Mur LTR ERVK 1298 1386 -462 4 717 22 0 0 0 chr5 17375878 17375900 -135161359 + AT_rich Low_complexity Low_complexity 1 22 0 4 717 23 78 0 0 chr5 17376074 17376125 -135161134 + AT_rich Low_complexity Low_complexity 1 51 0 4 717 2193 133 100 5 chr5 17376300 17376679 -135160580 + Lx4A LINE L1 6637 7051 -7 5 717 333 0 0 0 chr5 17376683 17376720 -135160539 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 717 290 321 61 0 chr5 17376761 17376892 -135160367 + Lx8 LINE L1 6956 7094 -379 5 717 22 56 0 0 chr5 17377163 17377199 -135160060 + AT_rich Low_complexity Low_complexity 1 36 0 5 717 234 0 0 0 chr5 17377268 17377294 -135159965 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 717 25 83 0 0 chr5 17377311 17377371 -135159888 + AT_rich Low_complexity Low_complexity 1 60 0 5 717 2486 134 13 5 chr5 17377560 17377951 -135159308 - Lx4A LINE L1 0 7058 6665 5 717 6001 54 3 5 chr5 17378260 17379027 -135158232 - L1Md_F2 LINE L1 -12 6570 5806 5 717 1982 179 268 9 chr5 17379142 17379690 -135157569 - RMER6C LTR ERVK 0 690 1 5 717 255 61 0 0 chr5 17379933 17379966 -135157293 + (CCA)n Simple_repeat Simple_repeat 1 33 0 5 717 219 36 0 0 chr5 17380168 17380196 -135157063 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 717 533 132 15 104 chr5 17380629 17380764 -135156495 + Lx3_Mus LINE L1 6886 7008 -1 5 717 236 241 0 18 chr5 17380785 17380840 -135156419 - MER21B LTR ERV1 -137 726 673 5 717 295 328 172 47 chr5 17380937 17381385 -135155874 + LTR31 LTR ERV1 106 610 -9 5 717 382 358 105 41 chr5 17381390 17381684 -135155575 - MER21B LTR ERV1 -165 698 386 5 717 21 71 0 0 chr5 17384563 17384605 -135152654 + AT_rich Low_complexity Low_complexity 1 42 0 5 717 674 266 216 1 chr5 17385064 17385338 -135151921 + MER90a LTR ERV1 40 358 -217 5 717 253 364 21 0 chr5 17385408 17385548 -135151711 + MLT1A0 LTR MaLR 1 143 -222 5 717 313 224 71 0 chr5 17385690 17385775 -135151484 - Lx5 LINE L1 -11 7039 6949 5 717 963 182 90 10 chr5 17387102 17387302 -135149957 - B3 SINE B2 0 216 1 5 717 556 74 21 0 chr5 17388259 17388354 -135148905 + (TA)n Simple_repeat Simple_repeat 2 98 0 5 717 374 259 26 8 chr5 17388354 17388471 -135148788 - MIR SINE MIR -67 195 77 5 717 26 30 0 0 chr5 17388531 17388564 -135148695 + AT_rich Low_complexity Low_complexity 1 33 0 5 717 661 141 7 32 chr5 17390167 17390321 -135146938 + GA-rich Low_complexity Low_complexity 2 151 0 5 717 217 177 65 0 chr5 17390949 17391011 -135146248 + T-rich Low_complexity Low_complexity 3 68 0 5 717 228 203 115 51 chr5 17391488 17391566 -135145693 - PB1D7 SINE Alu 0 120 38 5 717 216 97 0 0 chr5 17391706 17391737 -135145522 + (TAA)n Simple_repeat Simple_repeat 3 33 0 5 717 631 231 40 13 chr5 17392076 17392225 -135145034 + ID_B1 SINE B4 39 191 -33 5 717 279 274 26 94 chr5 17392123 17392240 -135145019 + PB1D10 SINE Alu 7 115 -2 5 717 943 197 104 72 chr5 17392569 17392887 -135144372 - Lx7 LINE L1 0 7696 7369 5 717 337 283 31 52 chr5 17397794 17397891 -135139368 - B1_Mur1 SINE Alu -42 107 13 5 717 492 242 140 30 chr5 17399238 17399438 -135137821 + MER2 DNA MER2_type 24 245 -100 5 717 1375 71 16 0 chr5 17400440 17400622 -135136637 - B2_Mm2 SINE B2 -8 187 3 5 717 450 286 28 67 chr5 17400899 17401150 -135136109 + L1_Rod LINE L1 5468 5705 -586 5 717 6184 166 8 126 chr5 17401143 17402688 -135134571 + L1_Mur2 LINE L1 2412 3774 -2103 5 717 1330 237 40 22 chr5 17403089 17403413 -135133846 + Lx6 LINE L1 7105 7434 -26 5 717 240 175 16 70 chr5 17403603 17403636 -135133623 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5 717 1141 68 0 7 chr5 17403636 17403784 -135133475 - B1_Mus1 SINE Alu -1 147 1 5 717 240 175 16 70 chr5 17403784 17403879 -135133380 + (TTTA)n Simple_repeat Simple_repeat 1 89 0 5 717 283 273 0 0 chr5 17403879 17403945 -135133314 - B1_Mur3 SINE Alu -1 148 83 5 717 1074 84 0 0 chr5 17404074 17404229 -135133030 + (GAAA)n Simple_repeat Simple_repeat 1 155 0 5 717 1523 172 41 6 chr5 17404233 17404548 -135132711 + Lx9 LINE L1 7319 7644 0 5 717 28 61 0 0 chr5 17404654 17404703 -135132556 + AT_rich Low_complexity Low_complexity 1 49 0 5 717 252 0 0 0 chr5 17405180 17405208 -135132051 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 717 396 0 0 0 chr5 17405598 17405642 -135131617 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 5 717 1127 58 0 7 chr5 17405651 17405791 -135131468 - B1_Mus2 SINE Alu -8 139 1 5 717 475 238 10 0 chr5 17406247 17406348 -135130911 - RMER6A LTR ERVK 0 756 655 5 717 2588 213 111 26 chr5 17406349 17407023 -135130236 - RMER13B LTR ERVK -100 808 91 5 717 555 16 0 0 chr5 17407153 17407217 -135130042 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 717 390 250 0 0 chr5 17407485 17407581 -135129678 - L1MA9 LINE L1 -397 5915 5820 5 717 30 0 0 0 chr5 17407670 17407700 -135129559 + AT_rich Low_complexity Low_complexity 1 30 0 5 717 963 172 0 0 chr5 17408445 17408598 -135128661 - ORR1A4 LTR MaLR 0 329 177 5 717 816 198 3 106 chr5 17408598 17408880 -135128379 + RMER17C LTR ERVK 1 253 -157 5 717 207 0 0 0 chr5 17408894 17408917 -135128342 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 717 27 29 0 0 chr5 17408924 17408958 -135128301 + AT_rich Low_complexity Low_complexity 1 34 0 5 717 212 367 67 27 chr5 17409362 17409586 -135127673 - L2c LINE L2 -52 3335 3103 5 717 628 62 0 0 chr5 17410055 17410135 -135127124 + L1_Mus3 LINE L1 5806 5885 -753 5 717 291 28 0 0 chr5 17410517 17410553 -135126706 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 5 717 432 0 0 0 chr5 17411208 17411256 -135126003 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 717 618 169 16 0 chr5 17412689 17412813 -135124446 - Lx9 LINE L1 -7 7637 7512 5 717 271 331 38 132 chr5 17415044 17415256 -135122003 + MER77 LTR ERVL 412 603 -4 5 717 775 311 56 63 chr5 17415083 17415402 -135121857 + MER21B LTR ERV1 415 731 -132 5 717 414 0 0 0 chr5 17415427 17415473 -135121786 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 717 38475 5 0 0 chr5 17415509 17420880 -135116379 + L1Md_A LINE L1 214 5586 -297 5 717 9019 2 0 0 chr5 17420880 17421876 -135115383 + L1Md_A LINE L1 5587 6582 0 5 717 378 267 20 10 chr5 17422734 17422836 -135114423 + PB1D9 SINE Alu 6 108 -12 5 717 185 0 0 39 chr5 17424094 17424120 -135113139 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 5 717 966 82 0 26 chr5 17425269 17425420 -135111839 - L1Md_F2 LINE L1 -2 6580 6434 5 717 769 206 21 31 chr5 17425427 17425618 -135111641 + RCHARR1 DNA MER1_type 784 972 -2 5 717 412 216 156 49 chr5 17425873 17425995 -135111264 + B3A SINE B2 2 136 -62 5 717 8217 43 1 4 chr5 17426014 17427492 -135109767 - L1Md_F2 LINE L1 -8 6574 5102 5 717 2829 155 30 37 chr5 17427499 17427952 -135109307 - L1_Mur2 LINE L1 -1956 3921 3472 5 717 3113 40 25 12 chr5 17427952 17428358 -135108901 + IAPLTR2a LTR ERVK 1 411 0 5 717 2829 155 30 37 chr5 17428358 17428473 -135108786 - L1_Mur2 LINE L1 -2406 3471 3357 5 717 207 204 0 0 chr5 17428526 17428575 -135108684 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 717 1238 134 8 45 chr5 17429568 17429811 -135107448 + Lx LINE L1 6421 6654 0 5 717 6164 158 13 5 chr5 17430836 17431935 -135105324 - L1_Mur2 LINE L1 -902 4975 3868 5 89 475 313 75 43 chr5 17432389 17432766 -135104493 + RLTR16 LTR ERVK 1 490 -38 5 718 4306 141 10 14 chr5 17433020 17433711 -135103548 - Lx2 LINE L1 -200 6797 6110 5 718 507 251 49 68 chr5 17433712 17433917 -135103342 + RMER3D-int LTR ERVK 159 359 -2483 5 718 454 148 0 36 chr5 17434071 17434155 -135103104 + RMER3D-int LTR ERVK 1014 1094 -1748 5 718 385 262 200 11 chr5 17434369 17434554 -135102705 - Charlie1 DNA MER1_type -1288 1493 1274 5 718 226 224 0 75 chr5 17434602 17434655 -135102604 + RSINE1 SINE B4 109 157 -8 5 718 1379 178 7 39 chr5 17434705 17435010 -135102249 + RMER3D-int LTR ERVK 1084 1378 -1464 5 718 3599 101 38 25 chr5 17435033 17435593 -135101666 - RMER2 LTR ERV1 0 567 1 5 718 813 245 60 44 chr5 17435594 17435846 -135101413 + MYSERV16_I-int LTR ERVK 288 543 -1783 5 718 830 248 91 55 chr5 17435860 17436167 -135101092 + MYSERV16_I-int LTR ERVK 616 933 -1393 5 718 334 119 60 0 chr5 17436174 17436241 -135101018 + MYSERV16_I-int LTR ERVK 1069 1139 -1187 5 718 662 239 0 0 chr5 17436265 17436445 -135100814 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 718 898 133 58 35 chr5 17436483 17436654 -135100605 - B2_Mm2 SINE B2 -19 176 2 5 718 3523 196 68 35 chr5 17436654 17437574 -135099685 + MYSERV16_I-int LTR ERVK 1374 2687 -155 5 718 2593 108 16 138 chr5 17437574 17438067 -135099192 + RLTR10C LTR ERVK 4 436 0 5 718 3523 183 63 24 chr5 17438067 17438090 -135099169 + MYSERV16_I-int LTR ERVK 2156 2177 -149 5 718 2823 82 5 13 chr5 17438090 17438487 -135098772 - MTA_Mm LTR MaLR -2 394 1 5 718 3523 183 63 24 chr5 17438487 17438575 -135098684 + MYSERV16_I-int LTR ERVK 2178 2257 -69 5 718 372 138 0 0 chr5 17438591 17438656 -135098603 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 718 224 161 16 0 chr5 17438722 17438784 -135098475 + T-rich Low_complexity Low_complexity 2 64 0 5 718 7815 87 8 3 chr5 17438806 17440030 -135097229 - L1_Mus3 LINE L1 -2 6636 5406 5 718 446 133 13 0 chr5 17440023 17440098 -135097161 + L1_Mus3 LINE L1 5299 5374 -509 5 718 323 317 60 60 chr5 17440098 17440313 -135096946 + RLTR16 LTR ERVK 41 255 -250 5 718 468 364 67 4 chr5 17441244 17441498 -135095761 - MER21-int LTR ERV1 -885 3306 3037 5 718 7474 59 29 1 chr5 17441586 17442664 -135094595 - L1_Mus1 LINE L1 0 6567 5460 5 718 2016 35 12 4 chr5 17442826 17443083 -135094176 + L1Md_F3 LINE L1 6314 6572 -12 5 718 291 298 87 69 chr5 17443149 17443483 -135093776 - L1M2c LINE L1 -4489 2679 2340 5 718 315 0 0 0 chr5 17443524 17443559 -135093700 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 718 252 332 70 42 chr5 17443681 17444112 -135093147 - L1M2c LINE L1 -4935 2233 1791 5 718 292 260 129 58 chr5 17444553 17444692 -135092567 - ORR1D2 LTR MaLR -10 360 212 5 718 344 315 45 45 chr5 17444760 17445029 -135092230 - RLTR15 LTR ERVK -18 341 73 5 718 692 169 97 0 chr5 17445058 17445273 -135091986 - L1_Mus4 LINE L1 -50 6588 6340 5 718 1057 151 123 0 chr5 17445266 17445478 -135091781 + L1_Mur2 LINE L1 4122 4359 -1518 5 718 263 258 29 29 chr5 17445686 17445754 -135091505 - ORR1D2 LTR MaLR -269 90 23 5 718 2320 210 132 14 chr5 17446493 17447327 -135089932 - RMER1B Other Other -2 1064 34 5 718 21 0 0 0 chr5 17448195 17448216 -135089043 + AT_rich Low_complexity Low_complexity 1 21 0 5 718 1065 82 0 20 chr5 17448951 17449090 -135088169 + B1_Mus1 SINE Alu 1 139 -9 6 718 243 0 0 0 chr5 17449090 17449117 -135088142 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 718 31 0 0 0 chr5 17449344 17449375 -135087884 + AT_rich Low_complexity Low_complexity 1 31 0 6 718 23 0 0 0 chr5 17449589 17449612 -135087647 + AT_rich Low_complexity Low_complexity 1 23 0 6 718 202 186 47 0 chr5 17449652 17449695 -135087564 + T-rich Low_complexity Low_complexity 5 49 0 6 718 374 240 214 41 chr5 17449702 17449945 -135087314 - B4A SINE B4 -5 287 3 6 718 1320 351 74 34 chr5 17449970 17450076 -135087183 + Lx9 LINE L1 5595 5702 -1771 6 718 225 0 0 0 chr5 17450076 17450101 -135087158 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 718 2001 301 163 31 chr5 17450101 17451694 -135085565 + Lx9 LINE L1 5703 7624 -20 6 718 2191 184 93 75 chr5 17451903 17452579 -135084680 + RMER6C LTR ERVK 1 688 -2 6 718 670 184 13 6 chr5 17452940 17453099 -135084160 + (CATATA)n Simple_repeat Simple_repeat 5 164 0 6 718 261 0 0 0 chr5 17453282 17453311 -135083948 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 718 272 316 0 0 chr5 17454385 17454442 -135082817 - B4 SINE B4 -4 288 232 6 718 26 0 0 0 chr5 17455180 17455206 -135082053 + AT_rich Low_complexity Low_complexity 1 26 0 6 718 5497 32 15 0 chr5 17455245 17455898 -135081361 + L1Md_F2 LINE L1 5882 6544 -38 6 718 852 39 0 0 chr5 17455898 17456002 -135081257 + (GAAA)n Simple_repeat Simple_repeat 2 105 0 6 718 1515 171 11 19 chr5 17456002 17456291 -135080968 - ORR1A2 LTR MaLR -61 333 14 6 718 6188 119 20 31 chr5 17457111 17458146 -135079113 - Lx3B LINE L1 -4 6969 5946 6 718 1085 118 96 36 chr5 17458146 17458366 -135078893 - L1_Mur1 LINE L1 -640 5246 5014 6 718 345 123 0 0 chr5 17459807 17459872 -135077387 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 6 718 272 179 15 0 chr5 17460701 17460768 -135076491 + Lx9 LINE L1 7572 7639 -5 6 718 296 353 10 0 chr5 17460905 17461007 -135076252 + MLT1B LTR MaLR 199 301 -89 6 718 286 236 27 14 chr5 17461044 17461117 -135076142 + MER68 LTR ERVL 486 559 -4 6 718 28 0 0 0 chr5 17461190 17461218 -135076041 + AT_rich Low_complexity Low_complexity 1 28 0 6 718 252 254 44 15 chr5 17461318 17461386 -135075873 + MLT1B LTR MaLR 392 461 -6 6 718 469 332 135 52 chr5 17461679 17461968 -135075291 - MLT1A1 LTR MaLR -4 404 92 6 718 352 331 159 6 chr5 17462223 17462393 -135074866 - MLT2B1 LTR ERVL -127 393 198 6 718 186 43 0 0 chr5 17462606 17462629 -135074630 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 6 718 1926 176 49 44 chr5 17464247 17464652 -135072607 + MTB_Mm LTR MaLR 1 407 0 6 718 492 99 0 0 chr5 17466182 17466253 -135071006 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 718 26 50 0 0 chr5 17466300 17466340 -135070919 + AT_rich Low_complexity Low_complexity 1 40 0 6 718 279 0 0 0 chr5 17466586 17466617 -135070642 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 718 25 0 0 0 chr5 17469372 17469397 -135067862 + AT_rich Low_complexity Low_complexity 1 25 0 6 718 339 274 12 0 chr5 17469675 17469759 -135067500 + MTE2b LTR MaLR 204 288 -91 6 718 441 0 0 0 chr5 17469759 17469808 -135067451 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 718 303 28 0 0 chr5 17469808 17469843 -135067416 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 718 205 191 0 0 chr5 17470773 17470815 -135066444 + A-rich Low_complexity Low_complexity 5 46 0 6 718 420 20 0 0 chr5 17470999 17471048 -135066211 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 718 5880 252 84 22 chr5 17471073 17472611 -135064648 - Lx6 LINE L1 -20 7440 5806 6 718 207 0 0 0 chr5 17472611 17472634 -135064625 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 718 5880 252 84 22 chr5 17472634 17472646 -135064613 - Lx6 LINE L1 -1655 5805 5794 6 718 1912 217 26 12 chr5 17472663 17473088 -135064171 + L1_Mur3 LINE L1 5330 5760 -120 6 718 1088 291 103 43 chr5 17473273 17473780 -135063479 - Lx8 LINE L1 -299 7174 6638 6 718 216 0 0 0 chr5 17475344 17475368 -135061891 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 6 718 201 39 0 0 chr5 17476548 17476574 -135060685 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 718 1050 108 0 0 chr5 17476574 17476713 -135060546 - B1_Mus1 SINE Alu -8 140 2 6 718 1040 121 60 6 chr5 17477198 17477364 -135059895 + MTB LTR MaLR 222 396 0 6 718 7329 78 70 6 chr5 17477364 17478396 -135058863 + MTB-int LTR MaLR 1 1098 0 6 718 2759 86 44 0 chr5 17478396 17478779 -135058480 + MTB LTR MaLR 1 400 0 6 718 4178 155 83 21 chr5 17478779 17479666 -135057593 - Lx5 LINE L1 -626 6424 5487 6 718 30 0 0 0 chr5 17479955 17479985 -135057274 + AT_rich Low_complexity Low_complexity 1 30 0 6 718 312 250 109 79 chr5 17482392 17482512 -135054747 + L1M5 LINE L1 3885 4018 -2128 6 718 5159 42 5 3 chr5 17482512 17483149 -135054110 - L1Md_F3 LINE L1 -1 6583 5946 6 718 312 250 109 79 chr5 17483149 17483193 -135054066 + L1M5 LINE L1 4019 4054 -2092 6 718 580 325 32 5 chr5 17483900 17484089 -135053170 + B3A SINE B2 3 196 -2 6 718 474 244 154 49 chr5 17484172 17484393 -135052866 - LTRIS5 LTR ERV1 0 482 237 6 718 190 283 118 11 chr5 17484679 17484772 -135052487 - MIRc SINE MIR -69 199 97 6 718 4086 69 25 35 chr5 17484891 17485461 -135051798 - LTRIS2 LTR ERV1 0 564 1 6 718 2504 189 21 60 chr5 17485587 17486122 -135051137 - RMER20A LTR ERVK -1 515 2 6 718 609 250 11 27 chr5 17486737 17486922 -135050337 - MYSERV-int LTR ERVK 0 6550 6369 6 718 467 191 175 54 chr5 17486937 17487103 -135050156 - RLTR19-int LTR ERVK -2464 3673 3488 6 718 1247 226 72 73 chr5 17487404 17488143 -135049116 - MYSERV6-int LTR ERVK -388 8571 8092 6 718 469 336 39 25 chr5 17489264 17489558 -135047701 + MER2 DNA MER2_type 7 320 -25 6 718 21 36 0 0 chr5 17489957 17489985 -135047274 + AT_rich Low_complexity Low_complexity 1 28 0 6 718 192 97 0 0 chr5 17490836 17490867 -135046392 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 718 674 105 0 9 chr5 17490905 17491011 -135046248 + (GGAA)n Simple_repeat Simple_repeat 3 107 0 6 718 322 228 141 39 chr5 17491013 17491141 -135046118 - Lx7 LINE L1 -395 7301 7161 6 718 467 185 23 0 chr5 17492373 17492503 -135044756 - Lx9 LINE L1 -1 7643 7511 6 718 992 194 47 13 chr5 17492526 17492761 -135044498 + Lx9 LINE L1 7209 7451 -193 6 718 320 336 77 5 chr5 17493921 17494041 -135043218 + PB1D7 SINE Alu 1 126 -23 6 718 223 301 0 27 chr5 17494120 17494195 -135043064 + B3A SINE B2 6 78 -120 6 718 309 333 22 0 chr5 17494323 17494458 -135042801 + B3 SINE B2 79 216 0 6 718 29 28 0 0 chr5 17495448 17495484 -135041775 + AT_rich Low_complexity Low_complexity 1 36 0 6 718 589 137 53 12 chr5 17495601 17495771 -135041488 + CT-rich Low_complexity Low_complexity 3 179 0 6 718 1162 90 11 6 chr5 17495771 17495949 -135041310 + (TCTCC)n Simple_repeat Simple_repeat 2 180 0 6 718 218 260 20 0 chr5 17495949 17495999 -135041260 + CT-rich Low_complexity Low_complexity 3 53 0 6 718 1255 261 69 42 chr5 17498064 17498598 -135038661 - Lx6 LINE L1 -64 7396 6506 6 718 630 310 27 0 chr5 17498631 17498854 -135038405 - Lx6 LINE L1 -687 6363 6106 6 718 261 71 119 0 chr5 17498861 17498903 -135038356 + Lx6 LINE L1 5844 5890 -1570 6 718 2213 32 3 21 chr5 17499598 17499883 -135037376 - L1Md_F3 LINE L1 -2 6582 6303 6 718 327 382 16 8 chr5 17501008 17501132 -135036127 + RSINE1 SINE B4 37 161 -4 1 718 688 200 26 32 chr5 17501559 17501714 -135035545 - URR1B DNA MER1_type -20 205 52 2 718 1178 265 101 15 chr5 17502049 17502455 -135034804 + Lx6 LINE L1 6994 7434 -26 3 718 232 339 67 62 chr5 17502671 17502866 -135034393 - 7SK RNA RNA -120 211 16 4 718 261 0 0 0 chr5 17502923 17502952 -135034307 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 718 249 260 27 27 chr5 17503491 17503566 -135033693 - RMER20B LTR ERVK -31 596 522 6 718 311 205 126 17 chr5 17503985 17504104 -135033155 + Lx9 LINE L1 7513 7644 0 7 718 21 0 0 0 chr5 17505724 17505745 -135031514 + AT_rich Low_complexity Low_complexity 1 21 0 8 718 230 277 58 65 chr5 17506386 17506525 -135030734 + Lx3_Mus LINE L1 6300 6437 -572 9 718 21 57 0 0 chr5 17506961 17506996 -135030263 + AT_rich Low_complexity Low_complexity 1 35 0 1 718 1143 181 22 9 chr5 17508322 17508545 -135028714 - URR1A DNA MER1_type 0 226 1 1 718 2573 107 10 20 chr5 17510360 17510634 -135026625 - L1_Mus3 LINE L1 -6 6632 6363 1 718 5285 115 71 15 chr5 17510634 17511492 -135025767 - RMER17A2 LTR ERVK 0 906 1 1 718 2573 107 10 20 chr5 17511492 17511609 -135025650 - L1_Mus3 LINE L1 -276 6362 6245 1 718 353 299 85 16 chr5 17512824 17512953 -135024306 - MER63A DNA AcHobo -37 173 36 1 718 765 33 0 0 chr5 17514292 17514384 -135022875 + (GA)n Simple_repeat Simple_repeat 2 93 0 1 718 430 314 66 8 chr5 17514702 17514824 -135022435 - ID_B1 SINE B4 -8 216 88 1 718 29 0 0 0 chr5 17515749 17515778 -135021481 + AT_rich Low_complexity Low_complexity 1 29 0 1 718 810 54 0 0 chr5 17516709 17516821 -135020438 + (GTTTG)n Simple_repeat Simple_repeat 2 113 0 1 718 1010 106 7 0 chr5 17516821 17516956 -135020303 - B1_Mus1 SINE Alu -9 139 4 1 718 276 330 41 31 chr5 17518712 17518809 -135018450 - B1F2 SINE Alu -34 115 18 2 718 440 285 89 8 chr5 17519815 17519939 -135017320 + ID_B1 SINE B4 88 221 -3 2 718 28 0 0 0 chr5 17521020 17521048 -135016211 + AT_rich Low_complexity Low_complexity 1 28 0 2 718 867 20 0 0 chr5 17521574 17521675 -135015584 + (TC)n Simple_repeat Simple_repeat 2 102 0 2 718 324 0 0 0 chr5 17521675 17521710 -135015549 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 718 596 299 24 6 chr5 17521881 17522046 -135015213 - B3 SINE B2 -46 170 3 2 718 784 308 4 43 chr5 17522060 17522294 -135014965 - B4A SINE B4 -66 226 2 2 718 462 279 81 24 chr5 17522994 17523203 -135014056 - L1MC2 LINE L1 -9 6335 6115 2 718 401 232 168 85 chr5 17523596 17523936 -135013323 - RLTR9A LTR ERVK 0 368 1 2 718 247 326 33 0 chr5 17523938 17524030 -135013229 - L1MC2 LINE L1 -343 5990 5896 2 718 227 309 25 0 chr5 17524025 17524106 -135013153 - L1MD LINE L1 -2419 5576 5494 2 718 220 274 48 96 chr5 17524118 17524243 -135013016 - BC1_Mm scRNA scRNA -31 121 3 3 718 23 33 0 0 chr5 17524918 17524948 -135012311 + AT_rich Low_complexity Low_complexity 1 30 0 3 718 351 0 0 0 chr5 17525962 17526001 -135011258 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 718 21 0 0 0 chr5 17526663 17526684 -135010575 + AT_rich Low_complexity Low_complexity 1 21 0 3 718 1187 100 0 11 chr5 17527221 17527403 -135009856 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 718 1251 88 0 0 chr5 17527419 17527682 -135009577 + (GGAA)n Simple_repeat Simple_repeat 1 263 0 3 718 24 32 0 0 chr5 17527832 17527863 -135009396 + AT_rich Low_complexity Low_complexity 1 31 0 3 718 2601 99 2 49 chr5 17528878 17529283 -135007976 + L1_Mus4 LINE L1 6250 6635 -1 3 718 291 203 48 48 chr5 17530453 17530515 -135006744 + RSINE1 SINE B4 4 65 -100 3 718 216 86 0 0 chr5 17531551 17531586 -135005673 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 718 1298 93 16 11 chr5 17531669 17531853 -135005406 - B2_Mm2 SINE B2 -9 186 2 4 718 185 0 40 0 chr5 17532155 17532180 -135005079 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 4 718 240 35 0 0 chr5 17532180 17532209 -135005050 + (CTTTG)n Simple_repeat Simple_repeat 2 30 0 4 718 894 235 62 19 chr5 17533021 17533277 -135003982 + Lx9 LINE L1 6814 7080 -564 4 718 1984 170 19 22 chr5 17533298 17533665 -135003594 - RLTR17 LTR ERVK -326 366 1 4 718 7274 191 65 56 chr5 17533667 17535806 -135001453 - RMER3D-int LTR ERVK -2 2840 163 4 718 2922 40 184 0 chr5 17535843 17536244 -135001015 - IAPLTR2_Mm LTR ERVK 0 475 1 4 718 1799 176 208 15 chr5 17536317 17536731 -135000528 - RLTR17 LTR ERVK -1 691 198 4 718 1909 216 92 34 chr5 17536733 17537120 -135000139 + Lx9 LINE L1 7074 7478 -166 4 718 249 83 0 0 chr5 17537120 17537156 -135000103 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 718 243 0 0 0 chr5 17537158 17537185 -135000074 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 718 1909 216 92 34 chr5 17537185 17537325 -134999934 + Lx9 LINE L1 7479 7631 -13 4 718 228 307 14 21 chr5 17537405 17537545 -134999714 + GA-rich Low_complexity Low_complexity 3 141 0 4 718 214 211 53 0 chr5 17537553 17537629 -134999630 + G-rich Low_complexity Low_complexity 3 82 0 5 718 409 332 48 52 chr5 17537654 17537864 -134999395 + MLT1A0 LTR MaLR 157 365 0 5 718 24 0 0 0 chr5 17539588 17539612 -134997647 + AT_rich Low_complexity Low_complexity 1 24 0 5 718 201 326 76 56 chr5 17540382 17540580 -134996679 - L2 LINE L2 -870 2549 2348 5 718 704 288 186 22 chr5 17540676 17540999 -134996260 - Lx8 LINE L1 -212 7261 6886 5 718 387 214 60 0 chr5 17540997 17541081 -134996178 + Lx8 LINE L1 7261 7349 -124 5 718 350 330 141 13 chr5 17541189 17541487 -134995772 + L1MCa LINE L1 157 492 -6016 5 718 208 80 59 20 chr5 17541508 17541559 -134995700 + T-rich Low_complexity Low_complexity 2 54 0 5 718 817 248 126 83 chr5 17541613 17542154 -134995105 + L1MCa LINE L1 708 1271 -5237 5 718 229 260 0 0 chr5 17542466 17542543 -134994716 + A-rich Low_complexity Low_complexity 1 77 0 5 718 263 311 21 39 chr5 17542543 17542649 -134994610 + MLT1E3 LTR MaLR 426 531 -122 5 718 699 137 0 0 chr5 17542881 17543005 -134994254 + (CA)n Simple_repeat Simple_repeat 1 124 0 5 718 392 341 43 40 chr5 17543014 17543322 -134993937 + B4A SINE B4 1 281 -11 6 718 209 195 0 0 chr5 17543326 17543367 -134993892 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 718 804 11 0 0 chr5 17544393 17544486 -134992773 + (TC)n Simple_repeat Simple_repeat 2 94 0 6 718 270 0 0 0 chr5 17544486 17544515 -134992744 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 6 718 1299 86 35 0 chr5 17544522 17544696 -134992563 - B2_Mm2 SINE B2 -14 181 2 6 718 1256 238 50 100 chr5 17545052 17545271 -134991988 - MTD LTR MaLR -2 417 188 6 718 1062 96 7 0 chr5 17545271 17545417 -134991842 + B1_Mus1 SINE Alu 2 148 0 6 718 1256 238 50 100 chr5 17545417 17545636 -134991623 - MTD LTR MaLR -232 187 1 6 718 299 85 21 0 chr5 17546079 17546126 -134991133 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 718 369 0 0 0 chr5 17546172 17546213 -134991046 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 718 758 250 78 43 chr5 17546213 17546512 -134990747 - MT2B LTR ERVL -89 512 174 6 718 3639 54 0 11 chr5 17546549 17547014 -134990245 + L1Md_F3 LINE L1 5126 5585 -298 7 718 8508 25 1 11 chr5 17547016 17548022 -134989237 + L1Md_F3 LINE L1 5588 6583 -1 7 718 590 208 0 19 chr5 17548022 17548130 -134989129 - MT2B LTR ERVL -415 118 13 6 718 312 120 0 0 chr5 17548714 17548764 -134988495 + (TCC)n Simple_repeat Simple_repeat 1 50 0 7 718 453 191 24 0 chr5 17548833 17548959 -134988300 - Lx9 LINE L1 -1 7643 7515 7 718 3890 145 59 10 chr5 17549643 17550321 -134986938 - Lx3B LINE L1 -3 6970 6260 7 718 253 311 88 54 chr5 17550355 17550559 -134986700 + L1ME1 LINE L1 5951 6161 -18 7 718 411 193 0 0 chr5 17550744 17550827 -134986432 + GA-rich Low_complexity Low_complexity 2 84 0 7 718 238 80 20 20 chr5 17551850 17551901 -134985358 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 718 360 326 52 128 chr5 17552648 17552692 -134984567 - ORR1E LTR MaLR -5 365 320 7 718 472 63 38 0 chr5 17552692 17552771 -134984488 + L1Md_F3 LINE L1 6488 6569 -15 7 718 884 43 17 0 chr5 17552777 17552893 -134984366 + (GAAA)n Simple_repeat Simple_repeat 2 119 0 7 718 496 322 26 128 chr5 17552893 17553171 -134984088 - ORR1E LTR MaLR -54 316 61 7 718 1164 258 56 32 chr5 17553238 17553651 -134983608 + Lx4B LINE L1 6590 7011 -39 8 718 39 0 0 0 chr5 17553758 17553797 -134983462 + AT_rich Low_complexity Low_complexity 1 39 0 8 718 328 282 87 81 chr5 17554474 17554659 -134982600 + RMER21B LTR ERV1 322 507 -335 8 718 275 294 45 34 chr5 17554698 17554786 -134982473 + RMER21B LTR ERV1 630 718 -124 8 718 1069 314 104 12 chr5 17554806 17555219 -134982040 - MLT2C2 LTR ERVL -11 453 3 8 718 874 302 94 38 chr5 17555624 17556478 -134980781 + L1MB8 LINE L1 4922 5817 -361 8 718 1784 132 54 63 chr5 17556478 17556810 -134980449 + ORR1A4 LTR MaLR 1 329 0 8 718 874 325 88 41 chr5 17556810 17557108 -134980151 + L1MB8 LINE L1 5818 6124 -54 8 718 283 318 8 68 chr5 17558457 17558575 -134978684 - MIRb SINE MIR -59 209 99 8 718 1129 261 52 57 chr5 17558712 17559081 -134978178 + MTEb LTR MaLR 9 375 -4 8 718 363 263 42 0 chr5 17560078 17560173 -134977086 - MLT1B LTR MaLR -5 385 287 8 718 318 50 0 0 chr5 17560227 17560267 -134976992 + (CAAG)n Simple_repeat Simple_repeat 1 40 0 8 718 261 0 0 0 chr5 17560273 17560302 -134976957 + (GA)n Simple_repeat Simple_repeat 2 30 0 9 718 857 140 6 0 chr5 17560342 17560520 -134976739 + (TC)n Simple_repeat Simple_repeat 2 180 0 9 718 514 279 25 0 chr5 17560532 17560654 -134976605 - B1_Mur1 SINE Alu -19 130 6 9 718 566 338 49 36 chr5 17562296 17562726 -134974533 - L1M2 LINE L1 -593 5290 4884 9 718 745 196 111 20 chr5 17562726 17562924 -134974335 - RLTR13D5 LTR ERVK 0 1023 808 9 718 332 319 72 22 chr5 17563232 17563370 -134973889 + RSINE1 SINE B4 21 165 0 9 719 1089 63 0 0 chr5 17564458 17564600 -134972659 + (TC)n Simple_repeat Simple_repeat 1 142 0 9 719 207 0 0 0 chr5 17564600 17564622 -134972637 + (CA)n Simple_repeat Simple_repeat 1 23 0 9 719 472 161 40 0 chr5 17565549 17565673 -134971586 + CT-rich Low_complexity Low_complexity 2 130 0 9 719 2027 173 70 20 chr5 17566737 17567138 -134970121 + MTC LTR MaLR 1 421 0 9 719 712 234 12 6 chr5 17567138 17567310 -134969949 + MTC-int LTR MaLR 3 175 -1083 9 719 3046 158 26 25 chr5 17567368 17568171 -134969088 + L1VL2 LINE L1 317 1062 -2553 1 719 4223 179 54 57 chr5 17568171 17569082 -134968177 - RMER13B LTR ERVK 0 908 1 1 719 2331 132 45 25 chr5 17569082 17569357 -134967902 + L1VL2 LINE L1 1063 1357 -2258 1 719 237 200 0 188 chr5 17569465 17569545 -134967714 - B2_Mm2 SINE B2 -130 65 1 1 719 733 229 44 13 chr5 17569587 17569746 -134967513 + RSINE1 SINE B4 2 165 0 1 719 3400 89 12 6 chr5 17570064 17570559 -134966700 + L1_Mus4 LINE L1 6133 6630 -6 1 719 7189 197 117 35 chr5 17570575 17572546 -134964713 + L1_Mur2 LINE L1 1637 3768 -2109 1 719 1182 119 27 21 chr5 17572544 17572732 -134964527 + Lx2 LINE L1 6620 6808 -189 1 719 2510 206 29 31 chr5 17572732 17573313 -134963946 + MTC-int LTR MaLR 520 1099 -159 9 719 217 319 87 11 chr5 17573496 17573588 -134963671 + L4 LINE RTE 1375 1473 -556 1 719 3823 78 2 8 chr5 17573844 17574359 -134962900 + L1Md_F2 LINE L1 6071 6582 0 1 719 31812 107 15 11 chr5 17575311 17577276 -134959983 - Lx3A LINE L1 -3 6978 4985 1 719 420 37 0 0 chr5 17577276 17577330 -134959929 + (TTG)n Simple_repeat Simple_repeat 1 54 0 1 719 31812 100 14 10 chr5 17577330 17581992 -134955267 - Lx3A LINE L1 -902 4984 315 1 719 452 209 25 68 chr5 17582132 17582321 -134954938 - RLTR9A LTR ERVK -2 435 255 1 719 823 151 0 0 chr5 17582316 17582442 -134954817 + RMER2 LTR ERV1 442 567 0 1 719 1661 162 18 51 chr5 17582456 17582843 -134954416 - RMER3D-int LTR ERVK -1456 1386 1022 1 719 3289 139 25 0 chr5 17583181 17583712 -134953547 + Lx2 LINE L1 6110 6653 -344 1 719 16860 143 79 72 chr5 17584284 17587976 -134949283 - RMER16-int LTR ERVK -1201 6205 319 1 719 1571 210 101 34 chr5 17587976 17588255 -134949004 + RLTR41 LTR ERV1 1 305 -141 1 719 1792 155 62 89 chr5 17588255 17588659 -134948600 + RLTR9C LTR ERVK 1 393 0 1 719 1571 210 101 34 chr5 17588659 17588797 -134948462 + RLTR41 LTR ERV1 306 445 -1 1 719 235 347 84 50 chr5 17589190 17589369 -134947890 + LTR16A LTR ERVL 218 402 -49 1 719 309 51 0 0 chr5 17589369 17589408 -134947851 + (A)n Simple_repeat Simple_repeat 1 39 0 1 719 420 55 0 0 chr5 17589447 17589502 -134947757 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 1 719 717 253 31 122 chr5 17589775 17590095 -134947164 - RLTR9A LTR ERVK 0 368 78 1 719 840 234 64 34 chr5 17590470 17590674 -134946585 + B3 SINE B2 3 212 -4 1 719 650 109 9 0 chr5 17592911 17593021 -134944238 + (TC)n Simple_repeat Simple_repeat 1 111 0 1 719 321 26 0 0 chr5 17593021 17593059 -134944200 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 719 295 336 34 41 chr5 17593213 17593359 -134943900 - ID_B1 SINE B4 0 224 80 1 719 427 331 112 48 chr5 17593993 17594288 -134942971 + ORR1E LTR MaLR 1 314 -45 1 719 248 91 0 22 chr5 17595206 17595251 -134942008 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 719 1174 299 60 35 chr5 17595326 17596124 -134941135 + Lx6 LINE L1 17 678 -7050 1 719 5308 257 89 45 chr5 17596142 17598130 -134939129 + Lx6 LINE L1 3096 5136 -744 1 719 414 0 0 0 chr5 17598130 17598176 -134939083 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 719 5308 234 83 53 chr5 17598176 17598893 -134938366 + Lx6 LINE L1 5137 5906 -1144 1 719 241 341 110 0 chr5 17598901 17598983 -134938276 - ID_B1 SINE B4 -100 124 34 1 719 1487 257 14 20 chr5 17599165 17599248 -134938011 + Lx6 LINE L1 6076 6158 -1302 1 719 1208 186 33 72 chr5 17599248 17599583 -134937676 + RLTRETN_Mm LTR ERVK 1 322 0 1 719 1487 257 14 20 chr5 17599583 17599856 -134937403 + Lx6 LINE L1 6159 6430 -1030 1 719 269 322 57 27 chr5 17599868 17600130 -134937129 + RLTR15 LTR ERVK 72 341 -18 1 719 2154 201 35 112 chr5 17600181 17600843 -134936416 - RMER19C LTR ERVK 0 611 1 1 719 318 26 0 0 chr5 17600956 17600995 -134936264 + (TTG)n Simple_repeat Simple_repeat 2 40 0 1 719 180 0 0 0 chr5 17601236 17601256 -134936003 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 1 719 28 29 0 0 chr5 17602046 17602081 -134935178 + AT_rich Low_complexity Low_complexity 1 35 0 1 719 324 70 0 0 chr5 17602280 17602323 -134934936 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1 719 561 316 69 46 chr5 17603145 17603361 -134933898 + ID_B1 SINE B4 4 224 0 1 719 655 29 49 0 chr5 17603390 17603492 -134933767 + (GA)n Simple_repeat Simple_repeat 2 108 0 1 719 301 128 0 41 chr5 17603534 17603574 -134933685 - Lx LINE L1 -519 6135 6096 1 719 2744 91 37 2 chr5 17603574 17603981 -134933278 + L1_Mus3 LINE L1 6207 6627 -11 1 719 1202 153 9 0 chr5 17604192 17604407 -134932852 - Lx LINE L1 0 6654 6438 1 719 290 355 56 21 chr5 17604712 17604856 -134932403 - MER5A DNA MER1_type -35 154 6 1 719 23 0 0 0 chr5 17605382 17605405 -134931854 + AT_rich Low_complexity Low_complexity 1 23 0 1 719 288 0 0 0 chr5 17605591 17605623 -134931636 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 719 221 269 0 55 chr5 17605926 17605981 -134931278 - AluF_3 SINE Alu -102 209 158 1 719 369 239 133 63 chr5 17607116 17607259 -134930000 + L1MC3 LINE L1 7359 7484 -301 1 719 200 59 29 0 chr5 17607329 17607363 -134929896 + (GAAA)n Simple_repeat Simple_repeat 4 38 0 1 719 2386 181 46 49 chr5 17607465 17608373 -134928886 + RMER17D2 LTR ERVK 1 889 0 1 719 235 200 0 18 chr5 17608449 17608505 -134928754 + L1MC2 LINE L1 6282 6336 -8 1 719 721 283 202 24 chr5 17608543 17608921 -134928338 + RMER1B Other Other 1 446 -620 1 719 1907 192 132 12 chr5 17608910 17609218 -134928041 + RMER1B Other Other 583 925 -141 1 719 261 0 0 0 chr5 17609218 17609247 -134928012 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 719 1907 192 132 12 chr5 17609247 17609370 -134927889 + RMER1B Other Other 926 1066 0 1 719 391 219 0 10 chr5 17609372 17609469 -134927790 + Lx9 LINE L1 7545 7640 -4 1 719 566 339 0 0 chr5 17609674 17609842 -134927417 + Lx5 LINE L1 6196 6363 -687 1 719 796 242 60 35 chr5 17609839 17610040 -134927219 + Lx5 LINE L1 6479 6684 -366 1 719 198 0 0 0 chr5 17610078 17610100 -134927159 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 719 2523 202 56 0 chr5 17610337 17610818 -134926441 - Lx5 LINE L1 -194 6856 6349 1 719 402 237 10 159 chr5 17610815 17611016 -134926243 + Lx4B LINE L1 6881 7051 -7 1 719 305 331 101 51 chr5 17611069 17611365 -134925894 + L1M5 LINE L1 4827 5137 -1009 1 719 351 0 0 0 chr5 17611485 17611524 -134925735 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 719 648 0 0 0 chr5 17611813 17611885 -134925374 + (TTTC)n Simple_repeat Simple_repeat 3 74 0 1 719 31 0 0 0 chr5 17611885 17611916 -134925343 + AT_rich Low_complexity Low_complexity 1 31 0 1 719 1205 68 0 0 chr5 17611916 17612064 -134925195 - B1_Mus1 SINE Alu 0 148 1 1 719 905 240 17 0 chr5 17612076 17612255 -134925004 + ORR1D1 LTR MaLR 193 374 0 1 719 490 225 92 122 chr5 17612370 17612464 -134924795 - RMER12 LTR ERVK -104 1218 1139 1 719 4196 130 31 73 chr5 17612464 17613304 -134923955 + RMER17D2 LTR ERVK 1 805 -4 1 719 490 225 92 122 chr5 17613304 17613447 -134923812 - RMER12 LTR ERVK -184 1138 988 1 719 723 172 0 0 chr5 17613454 17613588 -134923671 + GA-rich Low_complexity Low_complexity 4 137 0 1 719 949 50 0 0 chr5 17613644 17613764 -134923495 - B1_Mm SINE Alu -2 145 26 1 719 1236 242 63 99 chr5 17613730 17614589 -134922670 - RMER12 LTR ERVK -969 839 41 1 719 26622 133 46 2 chr5 17614602 17619870 -134917389 + L1_Mus3 LINE L1 1059 6632 -6 1 719 251 172 33 33 chr5 17620232 17620292 -134916967 + Lx8 LINE L1 5849 5908 -1565 1 719 327 174 35 0 chr5 17620630 17620716 -134916543 + GA-rich Low_complexity Low_complexity 1 89 0 1 719 572 289 50 25 chr5 17620716 17620918 -134916341 + MTEa LTR MaLR 168 374 -5 1 719 185 299 156 0 chr5 17622112 17622189 -134915070 + MIR SINE MIR 27 115 -93 1 719 23 0 0 0 chr5 17622327 17622350 -134914909 + AT_rich Low_complexity Low_complexity 1 23 0 1 719 700 279 60 46 chr5 17622606 17622888 -134914371 + B4A SINE B4 7 292 0 1 719 239 192 14 0 chr5 17622888 17622961 -134914298 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 719 187 366 114 0 chr5 17623246 17623377 -134913882 - L4 LINE RTE -1127 902 757 1 719 255 173 0 0 chr5 17624431 17624483 -134912776 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 719 210 71 0 0 chr5 17624485 17624513 -134912746 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 719 216 194 0 0 chr5 17624707 17624743 -134912516 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 1 719 197 119 24 0 chr5 17625066 17625108 -134912151 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 719 444 19 0 0 chr5 17626612 17626665 -134910594 + (GAAAA)n Simple_repeat Simple_repeat 4 56 0 1 719 276 333 9 9 chr5 17626704 17626810 -134910449 + (TATG)n Simple_repeat Simple_repeat 2 107 0 1 719 3284 81 11 15 chr5 17626826 17627303 -134909956 + IAPLTR2_Mm LTR ERVK 1 475 0 1 719 4883 72 5 49 chr5 17627305 17628025 -134909234 + IAPEz-int LTR ERVK 3 662 -5819 1 719 968 59 0 0 chr5 17628025 17628144 -134909115 + IAPEz-int LTR ERVK 1359 1477 -5004 1 719 1854 99 8 0 chr5 17628139 17628391 -134908868 + IAPEz-int LTR ERVK 2244 2497 -5183 1 719 15197 38 3 1 chr5 17628409 17630208 -134907051 + IAPEz-int LTR ERVK 4678 6481 0 1 719 3249 85 11 15 chr5 17630208 17630685 -134906574 + IAPLTR2_Mm LTR ERVK 1 475 0 1 719 284 377 57 10 chr5 17631183 17631392 -134905867 + LTR16A1 LTR ERVL 238 456 0 1 719 3446 69 0 11 chr5 17631710 17632163 -134905096 - L1_Mus1 LINE L1 0 6567 6120 1 719 1023 109 0 26 chr5 17632728 17632879 -134904380 + B1_Mus1 SINE Alu 2 148 0 1 719 203 79 26 0 chr5 17632881 17632919 -134904340 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 719 205 85 63 63 chr5 17633020 17633083 -134904176 + (CATAT)n Simple_repeat Simple_repeat 3 65 0 1 719 228 304 25 0 chr5 17633571 17633650 -134903609 - MLT1-int LTR MaLR -329 1042 962 1 719 560 309 122 8 chr5 17633824 17634249 -134903010 + L1ME3 LINE L1 5408 5886 -292 1 719 27 0 0 0 chr5 17634567 17634594 -134902665 + AT_rich Low_complexity Low_complexity 1 27 0 1 719 795 179 8 0 chr5 17635708 17635831 -134901428 - ETnERV2-int LTR ERVK -213 7193 7070 1 719 750 324 86 18 chr5 17635851 17636190 -134901069 + ORR1D2 LTR MaLR 1 362 -8 1 719 387 288 26 13 chr5 17637728 17637883 -134899376 + GA-rich Low_complexity Low_complexity 3 159 0 1 719 1020 254 52 38 chr5 17638546 17638833 -134898426 + MTD LTR MaLR 92 382 -37 1 719 3175 166 27 93 chr5 17638834 17639573 -134897686 - RMER6C LTR ERVK 0 690 1 1 719 2574 180 54 15 chr5 17639580 17640099 -134897160 - RLTR31_Mm LTR ERVK 0 561 23 1 719 1055 289 16 22 chr5 17640186 17640613 -134896646 - L1M2 LINE L1 -1253 4890 4436 1 719 246 136 0 0 chr5 17642876 17642920 -134894339 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 719 331 289 0 0 chr5 17643944 17644034 -134893225 - MER5A1 DNA MER1_type -36 130 41 2 719 460 296 32 32 chr5 17644424 17644581 -134892678 - RSINE1 SINE B4 -1 164 8 2 719 1411 34 69 0 chr5 17644762 17644937 -134892322 + B2_Mm1a SINE B2 2 188 -5 2 719 4613 124 11 52 chr5 17646554 17647398 -134889861 - RMER17D2 LTR ERVK 0 809 1 2 719 579 296 63 16 chr5 17647595 17647784 -134889475 - B3A SINE B2 0 198 1 2 719 532 246 283 4 chr5 17648028 17648279 -134888980 + Lx7 LINE L1 6707 7027 -669 2 719 1055 252 48 21 chr5 17648246 17648582 -134888677 + Lx7 LINE L1 7131 7475 -221 2 719 317 181 29 87 chr5 17648621 17648724 -134888535 + Lx6 LINE L1 7356 7452 -8 2 719 254 238 0 16 chr5 17648730 17648794 -134888465 - L1MA6 LINE L1 -112 6188 6126 2 719 207 139 0 0 chr5 17648880 17648916 -134888343 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 719 194 372 39 0 chr5 17650360 17650438 -134886821 + MER5B DNA MER1_type 13 93 -85 2 719 4659 165 27 31 chr5 17651488 17652444 -134884815 - Lx2 LINE L1 -1928 3958 3007 2 719 10569 156 27 1 chr5 17652444 17653100 -134884159 + Lx2 LINE L1 3958 4624 -1253 2 719 212 0 36 0 chr5 17653100 17653128 -134884131 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 719 10569 154 50 3 chr5 17653128 17655277 -134881982 + Lx2 LINE L1 4625 6990 -18 2 719 293 375 112 6 chr5 17655501 17655662 -134881597 - LTR33 LTR ERVL -337 178 1 2 719 25 31 0 0 chr5 17655692 17655724 -134881535 + AT_rich Low_complexity Low_complexity 1 32 0 2 719 552 233 75 40 chr5 17655741 17655942 -134881317 + L1MC2 LINE L1 6052 6259 -85 2 719 750 319 36 60 chr5 17656492 17656742 -134880517 + B4A SINE B4 7 250 -42 2 719 201 303 0 26 chr5 17656745 17656823 -134880436 + (TA)n Simple_repeat Simple_repeat 1 76 0 2 719 24 0 0 0 chr5 17656826 17656850 -134880409 + AT_rich Low_complexity Low_complexity 1 24 0 2 719 547 200 0 10 chr5 17657114 17657210 -134880049 - RMER1A Other Other -355 675 581 2 719 234 91 0 0 chr5 17657580 17657613 -134879646 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 2 719 410 94 16 0 chr5 17658389 17658453 -134878806 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 719 264 224 0 0 chr5 17659404 17659471 -134877788 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 719 384 349 59 14 chr5 17660055 17660276 -134876983 - ERVL-E-int LTR ERVL -1134 4533 4303 2 719 333 342 8 8 chr5 17660277 17660420 -134876839 - ERVL-E-int LTR ERVL -1381 4376 4159 2 719 219 279 42 56 chr5 17661132 17661204 -134876055 + B4A SINE B4 71 141 -151 2 719 498 140 0 0 chr5 17661536 17661636 -134875623 + (TC)n Simple_repeat Simple_repeat 1 100 0 2 719 631 370 69 25 chr5 17661685 17662209 -134875050 - ERVL-E-int LTR ERVL -2835 2832 2286 2 719 276 355 0 0 chr5 17662308 17662384 -134874875 - ID4_ SINE ID 0 83 8 2 719 1070 67 0 0 chr5 17662438 17662573 -134874686 + B1_Mus1 SINE Alu 1 135 -13 2 719 1085 62 7 0 chr5 17662576 17662722 -134874537 + (GGAAA)n Simple_repeat Simple_repeat 3 149 0 2 719 1814 201 128 106 chr5 17664132 17664548 -134872711 - RMER6D LTR ERVK 0 720 347 2 719 255 140 0 0 chr5 17664548 17664598 -134872661 + (CACTG)n Simple_repeat Simple_repeat 3 52 0 2 719 528 59 0 0 chr5 17664600 17664668 -134872591 + (CAGAA)n Simple_repeat Simple_repeat 3 70 0 2 719 1814 201 128 106 chr5 17664668 17664953 -134872306 - RMER6D LTR ERVK -374 346 1 2 719 4390 128 113 79 chr5 17664953 17665523 -134871736 - RMER6-int LTR ERVK 0 3177 2551 2 719 420 164 0 0 chr5 17665523 17665584 -134871675 - LSU-rRNA_Hsa rRNA rRNA -3198 1837 1777 2 719 4390 128 113 79 chr5 17665584 17665944 -134871315 - RMER6-int LTR ERVK 0 2550 2153 2 719 1117 179 9 37 chr5 17665944 17666159 -134871100 - RMER6C LTR ERVK 0 690 482 2 719 1892 174 56 0 chr5 17666234 17666573 -134870686 - RLTR19 LTR ERVK 0 499 142 2 719 3711 243 45 4 chr5 17666573 17667370 -134869889 + Lx5 LINE L1 6210 7039 -11 2 719 930 150 0 0 chr5 17667588 17667755 -134869504 + (TTC)n Simple_repeat Simple_repeat 2 168 0 2 719 847 106 106 0 chr5 17667835 17667967 -134869292 + B1_Mus1 SINE Alu 3 148 0 2 719 283 73 18 18 chr5 17667971 17668027 -134869232 + (CAAAAA)n Simple_repeat Simple_repeat 2 57 0 2 719 1031 210 203 3 chr5 17668679 17668985 -134868274 + ORR1B2 LTR MaLR 1 367 0 2 719 502 295 52 36 chr5 17669212 17669462 -134867797 - MER31-int LTR ERV1 -45 4891 4638 2 719 374 305 82 41 chr5 17669577 17669748 -134867511 - MER31-int LTR ERV1 -374 4562 4385 2 719 1464 231 17 17 chr5 17669875 17670223 -134867036 - MER31-int LTR ERV1 -996 3940 3593 2 719 4043 37 2 0 chr5 17670640 17671122 -134866137 + L1Md_T LINE L1 6100 6582 0 2 719 1043 76 0 33 chr5 17671358 17671508 -134865751 + B1_Mur4 SINE Alu 5 149 -1 2 719 181 353 15 0 chr5 17672119 17672187 -134865072 + L2a LINE L2 3342 3410 -16 2 719 987 272 72 69 chr5 17673492 17673812 -134863447 + MTEa LTR MaLR 5 325 -54 2 719 752 236 97 20 chr5 17673860 17674055 -134863204 - B3 SINE B2 -6 210 1 2 719 267 200 14 58 chr5 17674060 17674129 -134863130 + MTEa LTR MaLR 314 379 0 2 719 3284 102 8 14 chr5 17674172 17674657 -134862602 - Lx3_Mus LINE L1 0 7009 6528 2 719 34701 78 9 3 chr5 17674965 17680934 -134856325 - L1Md_F2 LINE L1 -4 6581 610 2 719 1146 42 0 7 chr5 17680934 17681079 -134856180 - Lx3_Mus LINE L1 -471 6538 6395 2 719 2649 118 11 8 chr5 17681073 17681508 -134855751 + L1MA4 LINE L1 5551 6022 -278 2 719 711 0 0 0 chr5 17681508 17681587 -134855672 + (GAA)n Simple_repeat Simple_repeat 2 80 0 2 719 3180 88 15 15 chr5 17681587 17682060 -134855199 + Lx3_Mus LINE L1 5926 6398 -611 2 719 280 309 0 42 chr5 17682431 17682502 -134854757 + PB1D10 SINE Alu 21 88 -29 2 719 278 315 97 26 chr5 17682502 17682545 -134854714 + ID_B1 SINE B4 102 223 -1 2 719 22 80 0 0 chr5 17683596 17683646 -134853613 + AT_rich Low_complexity Low_complexity 1 50 0 2 719 7469 82 2 6 chr5 17683957 17684957 -134852302 - L1Md_F2 LINE L1 0 6582 5587 2 719 287 299 103 93 chr5 17685347 17685661 -134851598 - ORR1E LTR MaLR -36 290 3 2 719 818 271 41 4 chr5 17686621 17686866 -134850393 - Tigger5 DNA MER2_type -11 2395 2142 2 719 2279 240 48 24 chr5 17687272 17687532 -134849727 + Lx9 LINE L1 6306 6587 -1057 2 719 3200 23 59 0 chr5 17687532 17687920 -134849339 - IAPLTR2a LTR ERVK 0 411 1 2 719 2279 240 48 24 chr5 17687920 17688206 -134849053 + Lx9 LINE L1 6588 6865 -779 2 719 702 239 158 10 chr5 17688206 17688409 -134848850 - ORR1D1 LTR MaLR -141 233 1 2 719 789 83 34 7 chr5 17688491 17688637 -134848622 + (TAGA)n Simple_repeat Simple_repeat 1 150 0 2 719 392 390 35 14 chr5 17689124 17689267 -134847992 + B3 SINE B2 1 146 -70 2 719 201 94 0 0 chr5 17689267 17689299 -134847960 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 719 298 281 91 0 chr5 17689527 17689648 -134847611 + MIRb SINE MIR 85 216 -52 2 719 1123 69 0 0 chr5 17689823 17689967 -134847292 - B1_Mus1 SINE Alu 0 148 5 2 719 542 124 0 20 chr5 17692898 17692997 -134844262 + (GGGA)n Simple_repeat Simple_repeat 4 100 0 2 719 1148 68 0 0 chr5 17693966 17694113 -134843146 + B1_Mus1 SINE Alu 2 148 0 2 719 651 367 34 53 chr5 17694136 17694493 -134842766 - MLT2B1 LTR ERVL -166 354 5 2 89 4222 133 29 1 chr5 17694658 17695315 -134841944 - Lx2A1 LINE L1 -3 7005 6331 2 720 5109 148 13 28 chr5 17695442 17696411 -134840848 - L1_Mur2 LINE L1 -1998 3879 2925 2 720 5603 192 21 23 chr5 17696430 17697733 -134839526 + Lx4B LINE L1 5656 6980 -20 2 720 24 0 0 0 chr5 17697805 17697829 -134839430 + AT_rich Low_complexity Low_complexity 1 24 0 2 720 281 336 18 18 chr5 17697831 17697943 -134839316 - PB1D10 SINE Alu 0 117 6 2 720 1341 249 144 3 chr5 17697980 17698347 -134838912 - MTD LTR MaLR 0 419 1 2 720 473 257 62 31 chr5 17698349 17698542 -134838717 + L1M2 LINE L1 3359 3557 -2586 2 720 437 215 65 9 chr5 17698930 17699038 -134838221 + PB1D9 SINE Alu 2 115 -5 2 720 213 200 0 24 chr5 17700393 17700434 -134836825 + G-rich Low_complexity Low_complexity 5 44 0 2 720 769 248 115 15 chr5 17702350 17702776 -134834483 - L1MA4 LINE L1 -71 6229 5756 2 720 447 208 87 17 chr5 17702895 17703069 -134834190 - L1MA4 LINE L1 -774 5526 5340 2 720 396 269 143 12 chr5 17703131 17703376 -134833883 - L1MA4 LINE L1 -1014 5129 4853 2 720 4617 121 8 25 chr5 17703569 17704291 -134832968 - Lx3B LINE L1 -4 6969 6260 2 720 1095 276 18 22 chr5 17704484 17705098 -134832161 + L1_Mur3 LINE L1 867 1475 -4405 2 720 1096 208 50 16 chr5 17705097 17705414 -134831845 - L1_Mur3 LINE L1 -4195 1685 1358 2 720 336 214 48 0 chr5 17705413 17705516 -134831743 + L1_Mur3 LINE L1 1679 1786 -4094 2 720 1127 234 70 23 chr5 17705510 17705996 -134831263 + L1_Mur3 LINE L1 2816 3324 -2556 2 720 3338 238 113 40 chr5 17705992 17707475 -134829784 + Lx7 LINE L1 5827 7406 -290 2 720 351 0 0 0 chr5 17707475 17707514 -134829745 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 720 2978 229 47 76 chr5 17707514 17707800 -134829459 + Lx7 LINE L1 7407 7695 -1 2 720 477 253 145 73 chr5 17707819 17707979 -134829280 + B3A SINE B2 1 173 -22 2 720 473 58 14 0 chr5 17707979 17708048 -134829211 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 2 720 353 253 145 73 chr5 17708048 17708066 -134829193 + B2_Mm2 SINE B2 174 191 -4 2 720 260 227 33 0 chr5 17708245 17708315 -134828944 + PB1D10 SINE Alu 40 114 -6 2 720 472 270 0 0 chr5 17708316 17708416 -134828843 - ERVL-B4-int LTR ERVL -3039 2675 2576 2 720 377 280 48 42 chr5 17708458 17708644 -134828615 - MLT2B4 LTR ERVL -61 495 196 2 720 4638 166 32 28 chr5 17708646 17709478 -134827781 + RMER13A LTR ERVK 1 836 -24 2 720 828 104 8 31 chr5 17709489 17709618 -134827641 + Lx2 LINE L1 6658 6783 -214 2 720 2149 197 45 2 chr5 17709615 17710078 -134827181 + L1_Mur3 LINE L1 3738 4220 -1660 2 720 7549 113 11 3 chr5 17710082 17711074 -134826185 + L1_Mus3 LINE L1 4976 5976 -662 2 720 881 72 83 53 chr5 17711074 17711207 -134826052 + B1_Mm SINE Alu 2 138 -9 2 720 239 0 0 31 chr5 17711207 17711239 -134826020 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 720 7549 84 19 9 chr5 17711239 17711890 -134825369 + L1_Mus3 LINE L1 5977 6635 -3 2 720 3119 225 49 74 chr5 17712062 17713099 -134824160 + L1_Mur3 LINE L1 4212 5222 -658 2 720 1614 267 43 24 chr5 17713095 17713556 -134823703 + Lx7 LINE L1 6806 7275 -421 2 720 310 319 92 7 chr5 17714170 17714312 -134822947 - L1M5 LINE L1 -387 5777 5624 2 720 714 288 28 42 chr5 17714619 17714833 -134822426 - ID_B1 SINE B4 -6 218 8 2 720 189 0 0 0 chr5 17714968 17714989 -134822270 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2 720 874 248 22 56 chr5 17715915 17716146 -134821113 + Lx8 LINE L1 7026 7248 -225 2 720 340 92 46 0 chr5 17716209 17716274 -134820985 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 2 720 29 0 0 0 chr5 17716281 17716310 -134820949 + AT_rich Low_complexity Low_complexity 1 29 0 2 720 185 274 25 76 chr5 17717913 17717992 -134819267 + L4 LINE RTE 1089 1163 -866 3 720 552 266 92 0 chr5 17719863 17720081 -134817178 - L1M4 LINE L1 -753 5393 5156 3 720 813 171 0 56 chr5 17720268 17720429 -134816830 + L1_Mur2 LINE L1 5435 5586 -291 3 720 320 369 58 58 chr5 17720533 17720674 -134816585 + B4A SINE B4 2 140 -152 3 720 3354 28 89 5 chr5 17720674 17721112 -134816147 - IAPLTR2_Mm LTR ERVK 0 475 1 3 720 320 369 58 58 chr5 17721112 17721241 -134816018 + B4A SINE B4 141 276 -16 3 720 306 0 0 0 chr5 17721241 17721275 -134815984 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 720 320 369 58 58 chr5 17721275 17721294 -134815965 + B4A SINE B4 277 292 0 3 720 2243 261 30 8 chr5 17721334 17721840 -134815419 + Lx5 LINE L1 6529 7045 -5 3 720 352 306 118 7 chr5 17721921 17721999 -134815260 + RSINE1 SINE B4 3 81 -84 3 720 648 38 0 0 chr5 17721999 17722078 -134815181 + (GGAA)n Simple_repeat Simple_repeat 2 80 0 3 720 352 306 118 7 chr5 17722078 17722134 -134815125 + RSINE1 SINE B4 82 151 -14 3 720 2015 125 16 73 chr5 17722843 17722922 -134814337 - RLTR15 LTR ERVK 0 359 285 3 720 956 76 27 14 chr5 17722922 17723069 -134814190 + L1Md_F2 LINE L1 6421 6569 -13 3 720 2015 125 16 73 chr5 17723069 17723370 -134813889 - RLTR15 LTR ERVK -75 284 1 3 720 1247 184 91 10 chr5 17724455 17724787 -134812472 + RMER1B Other Other 743 1066 0 3 720 21 0 0 0 chr5 17724937 17724958 -134812301 + AT_rich Low_complexity Low_complexity 1 21 0 3 720 1901 211 38 20 chr5 17727743 17728135 -134809124 + RLTR18B LTR ERVK 1 399 -113 3 720 320 252 55 55 chr5 17728136 17728245 -134809014 + B4A SINE B4 182 290 -2 3 720 423 0 0 0 chr5 17728270 17728317 -134808942 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 720 745 275 36 52 chr5 17730251 17730500 -134806759 - ORR1D2 LTR MaLR 0 370 126 3 720 721 300 72 60 chr5 17730511 17730769 -134806490 + ORR1D2 LTR MaLR 3 274 -110 3 720 970 269 112 39 chr5 17730770 17731056 -134806203 - MTD LTR MaLR -26 393 81 3 720 1116 163 90 35 chr5 17731084 17731339 -134805920 + RMER1C Other Other 939 1207 -135 3 720 222 204 0 0 chr5 17731339 17731388 -134805871 + (TTGG)n Simple_repeat Simple_repeat 2 50 0 3 720 467 228 8 0 chr5 17731459 17731582 -134805677 + RMER1C Other Other 1206 1329 -13 3 720 378 252 29 10 chr5 17731617 17731721 -134805538 - MTD LTR MaLR -304 115 10 3 720 245 351 82 48 chr5 17731887 17732243 -134805016 + RMER5 LTR ERV1 41 408 -126 3 720 376 78 0 45 chr5 17732243 17732310 -134804949 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 3 720 308 239 0 52 chr5 17732313 17732428 -134804831 - Lx9 LINE L1 -1 7643 7535 3 720 349 252 0 20 chr5 17732466 17732567 -134804692 - Lx9 LINE L1 -206 7438 7340 3 720 731 182 51 29 chr5 17732560 17732735 -134804524 + Lx9 LINE L1 7028 7206 -438 3 720 437 261 112 68 chr5 17732803 17733068 -134804191 - RLTR16 LTR ERVK -243 262 6 3 720 525 58 0 0 chr5 17733114 17733183 -134804076 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 720 237 222 18 36 chr5 17733187 17733243 -134804016 - B1F1 SINE Alu -18 131 77 3 720 300 53 0 0 chr5 17733783 17733821 -134803438 + (CAAAT)n Simple_repeat Simple_repeat 5 42 0 3 720 369 58 0 0 chr5 17734198 17734250 -134803009 + (TCTG)n Simple_repeat Simple_repeat 3 54 0 3 720 229 161 16 31 chr5 17734541 17734605 -134802654 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 3 720 619 313 49 6 chr5 17736568 17736732 -134800527 - B3A SINE B2 -25 173 3 3 720 695 244 36 18 chr5 17737271 17737438 -134799821 + MTEb LTR MaLR 1 170 -209 3 720 539 301 91 0 chr5 17739348 17739524 -134797735 + RMER30 DNA MER1_type 9 200 -2 3 720 234 0 0 0 chr5 17740670 17740696 -134796563 + (CAG)n Simple_repeat Simple_repeat 1 26 0 3 720 21 0 0 0 chr5 17740933 17740954 -134796305 + AT_rich Low_complexity Low_complexity 1 21 0 3 720 294 184 0 0 chr5 17741004 17741080 -134796179 + CT-rich Low_complexity Low_complexity 2 77 0 3 720 360 0 0 0 chr5 17741084 17741124 -134796135 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 720 29 60 0 0 chr5 17741322 17741372 -134795887 + AT_rich Low_complexity Low_complexity 1 50 0 3 720 22 35 0 0 chr5 17741632 17741661 -134795598 + AT_rich Low_complexity Low_complexity 1 29 0 3 720 2160 85 19 33 chr5 17741714 17742079 -134795180 + Lx3B LINE L1 5962 6321 -652 3 720 794 254 18 25 chr5 17742073 17742376 -134794883 + Lx6 LINE L1 898 1126 -5960 3 720 3843 216 77 8 chr5 17742360 17743896 -134793363 + Lx6 LINE L1 5087 6731 -729 3 720 790 173 6 6 chr5 17743915 17744078 -134793181 + GA-rich Low_complexity Low_complexity 1 163 0 3 720 216 0 0 0 chr5 17744078 17744102 -134793157 + (GGAA)n Simple_repeat Simple_repeat 2 25 0 3 720 673 163 15 0 chr5 17744102 17744237 -134793022 + GA-rich Low_complexity Low_complexity 1 137 0 3 720 227 250 0 0 chr5 17744237 17744281 -134792978 + polypurine Low_complexity Low_complexity 2 45 0 3 720 216 0 0 0 chr5 17745256 17745280 -134791979 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 720 449 267 212 29 chr5 17745978 17746148 -134791111 - MTEb LTR MaLR -20 359 159 3 720 844 175 24 6 chr5 17746196 17746363 -134790896 - URR1B DNA MER1_type 0 225 56 3 720 549 241 87 32 chr5 17748042 17748193 -134789066 - RLTR18-int LTR ERVK -1789 3572 3406 3 720 1868 189 89 87 chr5 17748193 17748721 -134788538 - RLTR24 LTR ERV1 0 529 1 3 720 549 241 87 32 chr5 17748721 17748788 -134788471 - RLTR18-int LTR ERVK -1956 3405 3342 3 720 984 82 0 0 chr5 17749004 17749139 -134788120 + (TC)n Simple_repeat Simple_repeat 1 135 0 3 720 256 111 40 27 chr5 17749614 17749688 -134787571 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 720 607 115 54 0 chr5 17749699 17749847 -134787412 + (CA)n Simple_repeat Simple_repeat 1 156 0 3 720 276 203 33 33 chr5 17750203 17750264 -134786995 + Lx8 LINE L1 7139 7199 -274 3 720 812 300 77 75 chr5 17750264 17750693 -134786566 - RMER10A LTR ERVL -2 440 11 3 720 426 281 139 42 chr5 17750707 17750945 -134786314 + Lx8 LINE L1 7204 7464 -9 3 720 742 261 71 15 chr5 17750993 17751208 -134786051 + B3A SINE B2 2 212 -4 3 720 4098 40 0 0 chr5 17751510 17752029 -134785230 + L1Md_F2 LINE L1 5068 5586 -297 3 720 8353 40 0 1 chr5 17752029 17753025 -134784234 + L1Md_F2 LINE L1 5587 6581 -1 3 720 260 180 16 32 chr5 17753042 17753105 -134784154 + MER4B-int LTR ERV1 1135 1196 -5562 3 720 3880 204 39 85 chr5 17753105 17754124 -134783135 + RLTR25A LTR ERVK 129 1100 -3 3 720 450 53 0 0 chr5 17755698 17755755 -134781504 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 720 270 194 0 0 chr5 17755756 17755818 -134781441 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 3 720 497 297 97 0 chr5 17756536 17756681 -134780578 - RSINE1 SINE B4 -6 159 1 3 720 399 360 18 0 chr5 17757292 17757456 -134779803 + MLT1D LTR MaLR 5 171 -334 3 720 2144 124 3 9 chr5 17757460 17757786 -134779473 + ORR1A2 LTR MaLR 3 326 -1 3 720 377 294 78 16 chr5 17757786 17757911 -134779348 + MLT1D LTR MaLR 223 355 -150 3 720 761 58 10 0 chr5 17757936 17758039 -134779220 + (TTTC)n Simple_repeat Simple_repeat 1 104 0 3 720 662 318 12 40 chr5 17758055 17758304 -134778955 + B4A SINE B4 5 246 -46 3 720 198 0 0 0 chr5 17758304 17758326 -134778933 + (GGA)n Simple_repeat Simple_repeat 1 22 0 3 720 1098 135 0 0 chr5 17758326 17758504 -134778755 + (GAA)n Simple_repeat Simple_repeat 1 178 0 3 720 295 316 71 54 chr5 17759257 17759441 -134777818 - MIRb SINE MIR -67 201 15 3 720 369 0 0 0 chr5 17759876 17759917 -134777342 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 720 233 286 12 61 chr5 17759959 17760041 -134777218 - RSINE1 SINE B4 -61 104 27 3 720 399 41 0 0 chr5 17760044 17760093 -134777166 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 720 294 305 42 0 chr5 17760117 17760284 -134776975 - L1MA4A LINE L1 -398 5905 5732 3 720 430 278 144 24 chr5 17760408 17760747 -134776512 - L1MA4A LINE L1 -577 5714 5333 3 720 303 242 15 0 chr5 17760782 17760848 -134776411 - MTE2b LTR MaLR -14 365 299 3 720 3492 198 17 13 chr5 17760912 17761617 -134775642 + Lx6 LINE L1 6233 6940 -520 3 720 924 223 53 26 chr5 17762020 17762325 -134774934 + Lx9 LINE L1 5598 5951 -1693 3 720 372 22 0 0 chr5 17762522 17762567 -134774692 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 720 1607 320 59 15 chr5 17762568 17763216 -134774043 + Lx9 LINE L1 6362 7037 -607 3 720 1964 42 0 0 chr5 17764180 17764417 -134772842 - L1Md_A LINE L1 -3 6579 6343 3 720 1856 220 59 68 chr5 17764815 17765326 -134771933 - RLTR31A_Mm LTR ERVK 0 590 1 3 720 246 271 81 23 chr5 17765734 17765787 -134771472 - MLT1A1 LTR MaLR -2 406 353 3 720 423 0 0 0 chr5 17765787 17765834 -134771425 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 720 246 271 81 23 chr5 17765834 17765867 -134771392 - MLT1A1 LTR MaLR -56 352 315 3 720 459 155 0 0 chr5 17766362 17766446 -134770813 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 720 303 140 0 0 chr5 17766446 17766496 -134770763 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 3 720 2838 132 327 4 chr5 17766916 17767473 -134769786 - RMER19A LTR ERVK 0 737 1 3 720 6891 219 57 19 chr5 17768059 17769887 -134767372 - Lx6 LINE L1 -4 7456 5548 3 720 234 0 0 0 chr5 17770337 17770363 -134766896 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 720 274 254 0 0 chr5 17770369 17770428 -134766831 + RMER30 DNA MER1_type 122 180 -22 3 720 234 0 0 0 chr5 17774073 17774099 -134763160 + (T)n Simple_repeat Simple_repeat 1 26 0 3 720 1876 235 99 2 chr5 17774139 17774707 -134762552 - Lx9 LINE L1 0 7644 7022 3 720 1617 43 14 9 chr5 17774998 17775211 -134762048 - L1Md_F2 LINE L1 -3 6579 6366 3 720 472 298 28 7 chr5 17776825 17776967 -134760292 - ID_B1 SINE B4 -1 223 79 3 720 211 330 30 50 chr5 17777018 17777117 -134760142 - MIRm SINE MIR -54 154 58 3 720 36282 14 3 7 chr5 17780754 17786159 -134751100 + L1Md_A LINE L1 208 5586 -297 3 720 8708 20 0 0 chr5 17786159 17787155 -134750104 + L1Md_A LINE L1 5587 6582 0 3 720 26 50 0 0 chr5 17787318 17787358 -134749901 + AT_rich Low_complexity Low_complexity 1 40 0 3 720 249 33 0 0 chr5 17787449 17787479 -134749780 + (A)n Simple_repeat Simple_repeat 1 30 0 3 720 318 332 85 26 chr5 17787621 17787810 -134749449 + MLT2C1 LTR ERVL 120 319 -78 3 720 288 341 125 31 chr5 17788281 17788505 -134748754 + MLT1C LTR MaLR 214 458 -9 3 720 186 240 240 0 chr5 17788549 17788653 -134748606 + L2a LINE L2 3222 3350 -76 3 720 5137 129 56 1 chr5 17788752 17789570 -134747689 + Lx4A LINE L1 6196 7058 0 3 720 3617 51 0 7 chr5 17791131 17791584 -134745675 - L1Md_F2 LINE L1 -1 6581 6132 3 720 257 346 92 18 chr5 17791804 17791820 -134745439 + MT2B LTR ERVL 145 168 -433 4 720 525 221 134 0 chr5 17791820 17791947 -134745312 + B1_Mur1 SINE Alu 3 146 -3 4 720 2016 173 199 19 chr5 17792352 17792934 -134744325 + RMER6C LTR ERVK 4 690 0 4 720 756 172 15 7 chr5 17795049 17795184 -134742075 - B1_Mus1 SINE Alu -12 136 1 4 720 832 296 81 3 chr5 17795952 17796287 -134740972 + Lx8 LINE L1 6309 6669 -804 4 720 788 255 34 54 chr5 17796369 17796721 -134740538 - RLTR15 LTR ERVK -14 345 1 4 720 474 266 64 27 chr5 17796734 17796954 -134740305 + Lx8 LINE L1 6789 7016 -457 4 720 255 61 0 0 chr5 17797554 17797587 -134739672 + (TATG)n Simple_repeat Simple_repeat 2 34 0 4 720 247 310 82 37 chr5 17797904 17798038 -134739221 - MER33 DNA MER1_type -184 140 1 4 720 198 0 0 0 chr5 17798069 17798091 -134739168 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 4 720 467 296 18 62 chr5 17798239 17798412 -134738847 + MER2 DNA MER2_type 93 253 -92 4 720 488 266 18 0 chr5 17798412 17798525 -134738734 - PB1D10 SINE Alu 0 117 3 4 720 467 271 14 36 chr5 17798525 17798599 -134738660 + MER2 DNA MER2_type 254 326 -19 4 720 285 51 0 0 chr5 17798976 17799015 -134738244 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 720 423 0 0 0 chr5 17799015 17799061 -134738198 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 720 331 239 11 0 chr5 17799332 17799420 -134737839 - L1MA9 LINE L1 -370 5942 5854 4 720 377 294 33 99 chr5 17799823 17799974 -134737285 + B1F1 SINE Alu 7 147 -2 4 720 400 77 31 0 chr5 17800449 17800514 -134736745 + (CATA)n Simple_repeat Simple_repeat 1 67 0 4 720 5013 131 60 14 chr5 17801170 17802020 -134735239 + Lx4A LINE L1 6161 7049 -9 4 720 213 39 0 0 chr5 17802020 17802046 -134735213 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 4 720 24 67 0 0 chr5 17802286 17802331 -134734928 + AT_rich Low_complexity Low_complexity 1 45 0 4 720 4497 146 31 35 chr5 17804068 17805012 -134732247 + L1Md_T LINE L1 266 1205 -5411 4 720 34745 32 0 0 chr5 17805018 17809436 -134727823 + L1Md_T LINE L1 1170 5586 -297 4 720 8099 52 0 0 chr5 17809436 17810432 -134726827 + L1Md_T LINE L1 5587 6582 0 4 720 34 0 0 0 chr5 17810493 17810527 -134726732 + AT_rich Low_complexity Low_complexity 1 34 0 4 720 609 320 52 30 chr5 17811130 17811394 -134725865 + B4A SINE B4 6 286 -6 4 720 337 273 13 0 chr5 17811426 17811503 -134725756 + ID_B1 SINE B4 145 222 -2 4 720 448 253 12 93 chr5 17812124 17812285 -134724974 - B1F SINE Alu -1 148 1 4 720 395 253 30 50 chr5 17813451 17813551 -134723708 - B1F1 SINE Alu -21 128 31 4 720 314 259 12 47 chr5 17814934 17815019 -134722240 - ID4 SINE ID -1 82 1 4 720 276 266 48 48 chr5 17815037 17815183 -134722076 + L1MA9 LINE L1 6119 6264 -48 4 720 21 0 0 0 chr5 17815314 17815335 -134721924 + AT_rich Low_complexity Low_complexity 1 21 0 4 720 295 327 68 19 chr5 17815345 17815448 -134721811 + B1F SINE Alu 2 109 -40 4 720 315 0 0 0 chr5 17815478 17815513 -134721746 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 720 769 252 48 10 chr5 17815667 17815875 -134721384 + B3 SINE B2 1 216 0 4 720 532 272 167 0 chr5 17815888 17816068 -134721191 + B3 SINE B2 1 210 -6 4 720 314 208 7 40 chr5 17816080 17816230 -134721029 + GA-rich Low_complexity Low_complexity 2 146 0 4 720 750 285 29 0 chr5 17816281 17816453 -134720806 + B3 SINE B2 37 213 -3 4 720 297 0 0 0 chr5 17816850 17816883 -134720376 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 720 692 58 38 19 chr5 17817788 17817894 -134719365 - B1_Mur3 SINE Alu 0 149 42 4 720 1485 72 0 5 chr5 17818408 17818603 -134718656 - B2_Mm2 SINE B2 0 195 2 4 720 282 29 0 0 chr5 17818659 17818694 -134718565 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 720 3310 44 7 0 chr5 17819532 17819941 -134717318 - L1Md_F2 LINE L1 0 6582 6171 4 720 483 268 39 13 chr5 17820155 17820310 -134716949 - ID_B1 SINE B4 -12 212 54 4 720 318 271 42 0 chr5 17820747 17820843 -134716416 + MER67C LTR ERV1 43 142 -569 4 720 198 167 0 0 chr5 17820845 17820881 -134716378 + CT-rich Low_complexity Low_complexity 1 36 0 4 720 436 300 236 47 chr5 17820894 17821237 -134716022 + MER67C LTR ERV1 234 641 -70 4 720 378 42 0 0 chr5 17821654 17821702 -134715557 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 720 307 207 76 12 chr5 17821705 17821799 -134715460 + L1MA7 LINE L1 6114 6209 -82 4 720 21 0 0 0 chr5 17821877 17821898 -134715361 + AT_rich Low_complexity Low_complexity 1 21 0 4 720 235 386 0 0 chr5 17823078 17823429 -134713830 + (CTATA)n Simple_repeat Simple_repeat 1 351 0 4 720 383 260 197 39 chr5 17823559 17823767 -134713492 - Charlie1a DNA MER1_type -256 1199 959 4 720 227 293 40 0 chr5 17823916 17823991 -134713268 - Charlie1a DNA MER1_type -486 969 892 4 720 374 287 76 23 chr5 17824266 17824398 -134712861 - Charlie1a DNA MER1_type -987 468 330 4 720 465 228 33 0 chr5 17824395 17824487 -134712772 + PB1D10 SINE Alu 7 101 -16 4 720 308 306 95 20 chr5 17824597 17824744 -134712515 - Charlie1a DNA MER1_type -1220 235 78 4 720 233 299 24 79 chr5 17825346 17825473 -134711786 + MLT1J LTR MaLR 309 428 -84 4 11 727 258 59 0 chr5 17825689 17825875 -134711384 + B3 SINE B2 6 202 -14 4 721 212 79 79 0 chr5 17826801 17826839 -134710420 + A-rich Low_complexity Low_complexity 3 43 0 4 721 1254 161 21 17 chr5 17827566 17827800 -134709459 - Lx6 LINE L1 -786 6674 6440 4 721 219 88 0 0 chr5 17827902 17827936 -134709323 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 4 721 283 376 58 25 chr5 17829388 17829628 -134707631 - L4 LINE RTE -1520 509 262 4 721 240 274 138 57 chr5 17830196 17830579 -134706680 + L1M4 LINE L1 5386 5799 -379 4 721 493 259 209 30 chr5 17830888 17831190 -134706069 + ORR1E LTR MaLR 4 359 0 4 721 344 262 0 0 chr5 17831710 17831790 -134705469 + ID4_ SINE ID 3 82 -1 4 721 260 130 0 0 chr5 17832579 17832625 -134704634 + L1MB3 LINE L1 5420 5465 -715 4 721 239 207 32 40 chr5 17832639 17832765 -134704494 + (TAA)n Simple_repeat Simple_repeat 3 127 0 4 721 852 260 116 53 chr5 17832771 17833107 -134704152 + L1MB3 LINE L1 5511 5867 -316 4 721 444 19 0 0 chr5 17833107 17833160 -134704099 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 721 852 260 116 53 chr5 17833160 17833191 -134704068 + L1MB3 LINE L1 5868 5894 -289 4 721 829 216 31 21 chr5 17833191 17833385 -134703874 + B3A SINE B2 1 196 -2 4 721 852 260 116 53 chr5 17833385 17833483 -134703776 + L1MB3 LINE L1 5895 6006 -177 4 721 216 0 0 0 chr5 17834843 17834867 -134702392 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 721 1025 86 8 1 chr5 17834961 17835129 -134702130 + B2_Mm2 SINE B2 7 174 -19 4 721 480 35 0 0 chr5 17835129 17835187 -134702072 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 721 241 259 167 60 chr5 17835572 17835740 -134701519 + L1_Mur3 LINE L1 881 1066 -6646 4 721 191 95 48 0 chr5 17836419 17836461 -134700798 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 4 721 21 0 0 0 chr5 17837055 17837076 -134700183 + AT_rich Low_complexity Low_complexity 1 21 0 4 721 199 158 26 0 chr5 17837543 17837581 -134699678 + L3 LINE CR1 3347 3385 -1104 4 721 21 0 0 0 chr5 17837797 17837818 -134699441 + AT_rich Low_complexity Low_complexity 1 21 0 4 721 24 67 0 0 chr5 17838087 17838132 -134699127 + AT_rich Low_complexity Low_complexity 1 45 0 4 721 1040 88 7 0 chr5 17838743 17838880 -134698379 + B1_Mus1 SINE Alu 2 139 -9 4 721 330 45 0 0 chr5 17838880 17838924 -134698335 + (CAAAC)n Simple_repeat Simple_repeat 2 45 0 4 721 195 69 0 0 chr5 17838924 17838952 -134698307 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 4 721 7181 210 40 20 chr5 17839005 17841782 -134695477 + Lx6 LINE L1 4607 7460 0 4 721 509 294 88 67 chr5 17842685 17843160 -134694099 + L1MC LINE L1 4606 5090 -1056 4 721 554 262 151 4 chr5 17843454 17843692 -134693567 + L1MC LINE L1 5450 5722 -611 4 721 35 0 0 0 chr5 17844505 17844540 -134692719 + AT_rich Low_complexity Low_complexity 1 35 0 4 721 1182 102 0 0 chr5 17845510 17845794 -134691465 + (TG)n Simple_repeat Simple_repeat 1 284 0 4 721 183 255 39 0 chr5 17847268 17847319 -134689940 - L2b LINE L2 0 3375 3323 4 721 188 111 28 0 chr5 17847605 17847641 -134689618 + (GGGA)n Simple_repeat Simple_repeat 3 39 0 4 721 607 192 0 33 chr5 17847691 17847874 -134689385 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 721 405 297 155 0 chr5 17847902 17848057 -134689202 - B3A SINE B2 -18 180 2 4 721 742 113 8 8 chr5 17848409 17848534 -134688725 + (GGAGA)n Simple_repeat Simple_repeat 2 126 0 4 721 355 16 0 0 chr5 17848534 17848595 -134688664 + (GGGA)n Simple_repeat Simple_repeat 1 61 0 4 721 856 313 47 47 chr5 17850805 17851445 -134685814 + MMERVK10C-int LTR ERVK 3384 4023 -3558 4 721 407 314 17 23 chr5 17851440 17851613 -134685646 + MMERVK10C-int LTR ERVK 6898 7069 -512 4 721 1489 169 0 22 chr5 17851747 17852014 -134685245 + MMERVK10C-int LTR ERVK 7321 7581 0 4 721 2334 80 23 3 chr5 17852014 17852317 -134684942 + RLTR27 LTR ERVK 1 309 0 4 721 532 268 58 7 chr5 17852797 17852951 -134684308 + B3A SINE B2 3 164 -34 4 721 985 70 14 0 chr5 17852951 17853094 -134684165 + (CA)n Simple_repeat Simple_repeat 1 145 0 4 721 297 262 37 37 chr5 17854454 17854561 -134682698 + B1F SINE Alu 10 116 -33 4 721 201 250 25 62 chr5 17855102 17855183 -134682076 + MIR SINE MIR 139 216 -46 4 721 222 91 0 0 chr5 17855187 17855220 -134682039 + (CAT)n Simple_repeat Simple_repeat 2 34 0 4 721 983 134 0 13 chr5 17855220 17855371 -134681888 - B1_Mur3 SINE Alu 0 149 1 4 721 1494 0 0 0 chr5 17855567 17855738 -134681521 - L1Md_T LINE L1 0 6582 6412 4 721 21 36 0 0 chr5 17856732 17856760 -134680499 + AT_rich Low_complexity Low_complexity 1 28 0 4 721 22 0 0 0 chr5 17858135 17858157 -134679102 + AT_rich Low_complexity Low_complexity 1 22 0 4 721 258 291 112 86 chr5 17859162 17859198 -134678061 + MLT1-int LTR MaLR 178 209 -1162 4 721 212 0 36 0 chr5 17859198 17859226 -134678033 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 721 1094 73 0 0 chr5 17859226 17859363 -134677896 - B1_Mus2 SINE Alu -10 137 1 4 721 258 291 112 86 chr5 17859363 17859494 -134677765 + MLT1-int LTR MaLR 210 344 -1027 4 721 3140 20 11 107 chr5 17859494 17859932 -134677327 + MTA_Mm LTR MaLR 1 396 0 4 721 258 291 112 86 chr5 17859932 17860029 -134677230 + MLT1-int LTR MaLR 345 450 -921 4 721 192 77 0 0 chr5 17860037 17860063 -134677196 + (ATG)n Simple_repeat Simple_repeat 2 27 0 4 721 747 162 157 91 chr5 17860893 17861103 -134676156 + URR1B DNA MER1_type 2 225 0 4 721 490 297 79 60 chr5 17864170 17864385 -134672874 + MER20 DNA MER1_type 1 219 0 4 721 249 83 0 0 chr5 17866192 17866228 -134671031 + (CCG)n Simple_repeat Simple_repeat 2 37 0 5 721 31 26 0 0 chr5 17866272 17866310 -134670949 + GC_rich Low_complexity Low_complexity 1 38 0 5 721 304 297 95 43 chr5 17867825 17867941 -134669318 - MLT1A LTR MaLR -16 358 237 5 721 293 275 107 27 chr5 17868003 17868115 -134669144 - MLT1A LTR MaLR -248 126 6 5 721 674 238 113 25 chr5 17868634 17868918 -134668341 - L1MB8 LINE L1 -2 6176 5868 5 721 2044 214 12 27 chr5 17869095 17869576 -134667683 + RMER19C LTR ERVK 138 611 0 5 721 197 108 0 26 chr5 17870315 17870353 -134666906 + (GGGTG)n Simple_repeat Simple_repeat 1 37 0 5 721 349 300 0 35 chr5 17870379 17870493 -134666766 + MTE2a LTR MaLR 1 110 -269 5 721 270 81 0 0 chr5 17870910 17870947 -134666312 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 5 721 1107 71 0 0 chr5 17871033 17871173 -134666086 + B1_Mus1 SINE Alu 1 140 -8 5 721 259 45 22 22 chr5 17871173 17871219 -134666040 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 5 721 433 336 134 30 chr5 17871534 17872100 -134665159 + L2a LINE L2 2737 3370 -56 5 721 232 282 23 12 chr5 17872152 17872238 -134665021 - L2a LINE L2 -1 3425 3339 5 721 658 209 23 55 chr5 17872808 17873026 -134664233 - RMER17C LTR ERVK -199 211 1 5 721 815 37 0 9 chr5 17874956 17875064 -134662195 + (CA)n Simple_repeat Simple_repeat 2 108 0 5 721 305 294 49 44 chr5 17875165 17875348 -134661911 + B3 SINE B2 6 186 -12 5 721 306 0 0 0 chr5 17875355 17875389 -134661870 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 5 721 374 313 15 7 chr5 17876351 17876486 -134660773 - MIRc SINE MIR -67 201 66 5 721 213 196 0 0 chr5 17876719 17876765 -134660494 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 721 301 267 72 0 chr5 17878464 17878659 -134658600 - Charlie5 DNA MER1_type -10 2614 2406 5 721 430 258 47 52 chr5 17878691 17878863 -134658396 - Charlie5 DNA MER1_type -2425 199 29 5 721 214 174 0 0 chr5 17880049 17880095 -134657164 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 5 721 321 140 0 0 chr5 17880310 17880367 -134656892 + (A)n Simple_repeat Simple_repeat 1 57 0 5 721 220 310 42 0 chr5 17881485 17881556 -134655703 + ID2 SINE ID 9 82 -1 5 721 502 226 71 21 chr5 17881596 17881736 -134655523 - B3 SINE B2 0 216 70 5 721 363 318 18 89 chr5 17882791 17882960 -134654299 + MLT1H LTR MaLR 146 302 -247 5 721 528 252 0 0 chr5 17883374 17883489 -134653770 - RSINE1 SINE B4 -35 130 16 5 721 1932 171 80 91 chr5 17883813 17884264 -134652995 - RLTR41 LTR ERV1 0 446 1 5 721 904 269 26 30 chr5 17884367 17884670 -134652589 - RLTR6-int LTR ERV1 -76 7702 7401 5 721 264 192 0 0 chr5 17884663 17884715 -134652544 - MuRRS4-int LTR ERV1 -468 4595 4544 5 721 1703 286 71 80 chr5 17884977 17886491 -134650768 - MuRRS4-int LTR ERV1 -1991 5610 2929 5 721 419 318 92 54 chr5 17886678 17887030 -134650229 - MuRRS4-int LTR ERV1 -5140 2466 2079 5 721 1016 288 54 21 chr5 17887232 17887658 -134649601 - MuRRS4-int LTR ERV1 -3319 1744 1305 5 721 2086 132 82 115 chr5 17888944 17889405 -134647854 - RLTR41 LTR ERV1 0 446 1 5 721 513 319 35 127 chr5 17889441 17889607 -134647652 - B4A SINE B4 0 292 136 5 721 432 0 0 0 chr5 17889607 17889655 -134647604 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 721 513 319 35 127 chr5 17889655 17889804 -134647455 - B4A SINE B4 -157 135 7 5 721 654 341 135 15 chr5 17889976 17890443 -134646816 - BLACKJACK DNA AcHobo -2080 864 342 5 721 384 82 0 0 chr5 17890724 17890785 -134646474 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 721 225 0 0 0 chr5 17890785 17890810 -134646449 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 721 28 0 0 0 chr5 17891395 17891423 -134645836 + AT_rich Low_complexity Low_complexity 1 28 0 5 721 250 275 88 0 chr5 17891742 17891822 -134645437 - MER5A1 DNA MER1_type -13 153 67 5 721 1218 97 0 0 chr5 17892730 17892905 -134644354 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 5 721 2296 79 0 74 chr5 17892912 17893279 -134643980 - Lx LINE L1 -4 6650 6311 5 721 2059 141 3 6 chr5 17893279 17893637 -134643622 + L1_Mur2 LINE L1 4382 4738 -1139 5 721 3179 72 0 2 chr5 17893699 17894103 -134643156 - L1_Mus1 LINE L1 -4 6563 6161 5 721 3289 49 2 0 chr5 17894103 17894530 -134642729 - L1_Mus1 LINE L1 -553 6014 5587 5 721 1317 111 0 0 chr5 17894550 17894749 -134642510 + L1_Mm LINE L1 5019 5217 -666 5 721 247 308 0 42 chr5 17897028 17897123 -134640136 + C-rich Low_complexity Low_complexity 5 95 0 5 721 783 126 0 0 chr5 17897867 17897994 -134639265 + (GGAA)n Simple_repeat Simple_repeat 3 129 0 5 721 777 22 0 0 chr5 17898159 17898250 -134639009 + (GGAA)n Simple_repeat Simple_repeat 3 93 0 5 721 610 350 44 27 chr5 17898379 17898717 -134638542 - MLT1C LTR MaLR -8 459 116 5 721 263 268 0 12 chr5 17898875 17898958 -134638301 + MLT1F LTR MaLR 466 547 -1 5 721 238 212 98 41 chr5 17899511 17899634 -134637625 - LTR37A LTR ERV1 -4 422 293 5 721 358 233 57 32 chr5 17899742 17899866 -134637393 - LTR37A LTR ERV1 -299 127 1 5 721 22 0 0 0 chr5 17899959 17899981 -134637278 + AT_rich Low_complexity Low_complexity 1 22 0 5 721 1153 153 42 9 chr5 17900318 17900535 -134636724 + URR1B DNA MER1_type 1 224 -1 5 721 1358 83 33 0 chr5 17900905 17901086 -134636173 - B2_Mm2 SINE B2 -8 187 1 5 721 466 328 159 28 chr5 17901787 17902151 -134635108 + MLT1F2 LTR MaLR 3 414 -146 5 721 901 239 11 44 chr5 17902201 17902426 -134634833 + B3A SINE B2 2 214 -2 5 721 33150 62 6 2 chr5 17903736 17908928 -134628331 + L1Md_F3 LINE L1 424 5585 -298 5 721 8117 34 16 1 chr5 17908929 17909912 -134627347 + L1Md_F3 LINE L1 5587 6584 0 5 721 1639 243 109 49 chr5 17909994 17910570 -134626689 - RMER19C LTR ERVK 0 611 1 5 721 353 302 28 0 chr5 17910681 17910787 -134626472 - B1F1 SINE Alu -1 148 40 5 721 381 278 9 69 chr5 17911180 17911296 -134625963 - RSINE1 SINE B4 0 165 57 5 721 631 318 43 23 chr5 17911442 17911928 -134625331 + L1_Rod LINE L1 1387 1882 -3965 5 721 1715 51 25 25 chr5 17911939 17912179 -134625080 - RLTRETN_Mm LTR ERVK -82 240 1 5 721 959 253 78 23 chr5 17912420 17912768 -134624491 - ORR1D2 LTR MaLR -3 367 1 5 721 733 214 34 21 chr5 17912769 17913003 -134624256 + L1_Mur3 LINE L1 2275 2511 -3369 5 721 22 35 0 0 chr5 17913531 17913560 -134623699 + AT_rich Low_complexity Low_complexity 1 29 0 5 721 1166 73 0 12 chr5 17913608 17913775 -134623484 + (TTCTC)n Simple_repeat Simple_repeat 3 167 0 5 721 8003 97 35 73 chr5 17913799 17915548 -134621711 - Lx3_Mus LINE L1 -8 7001 5321 5 721 225 323 42 31 chr5 17915701 17915797 -134621462 + LTR16D LTR ERVL 286 382 -269 5 721 237 300 84 36 chr5 17916073 17916156 -134621103 - PB1D10 SINE Alu -3 114 28 5 721 233 375 156 4 chr5 17916246 17916522 -134620737 - L2 LINE L2 -900 2519 2202 5 721 261 0 0 0 chr5 17916638 17916667 -134620592 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 721 298 324 98 6 chr5 17916702 17916885 -134620374 - L2 LINE L2 -1410 2009 1810 5 721 817 147 7 27 chr5 17917098 17917245 -134620014 + B1_Mur4 SINE Alu 7 150 0 5 721 549 44 0 0 chr5 17917281 17917349 -134619910 + (TCC)n Simple_repeat Simple_repeat 3 70 0 5 721 210 309 59 0 chr5 17917352 17917420 -134619839 - PB1D7 SINE Alu -2 118 47 5 721 3455 28 0 2 chr5 17917443 17917840 -134619419 - MTA_Mm LTR MaLR 0 396 1 5 721 243 184 0 20 chr5 17918069 17918119 -134619140 + CT-rich Low_complexity Low_complexity 4 52 0 5 721 303 93 0 0 chr5 17918700 17918743 -134618516 + (TAA)n Simple_repeat Simple_repeat 3 45 0 5 721 613 242 44 44 chr5 17918842 17919045 -134618214 - MER2 DNA MER2_type -5 340 138 5 721 1511 192 38 24 chr5 17919138 17919485 -134617774 + RMER1B Other Other 568 891 -175 5 721 545 205 31 24 chr5 17919625 17919802 -134617457 + RMER1B Other Other 853 1059 -7 5 721 261 0 0 0 chr5 17920427 17920456 -134616803 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 721 494 194 113 0 chr5 17920457 17920581 -134616678 - B1F2 SINE Alu -9 140 3 5 721 684 45 0 0 chr5 17921202 17921290 -134615969 + (GA)n Simple_repeat Simple_repeat 2 89 0 5 721 805 81 295 7 chr5 17921658 17921807 -134615452 + B2_Mm2 SINE B2 1 192 -3 5 721 23 33 0 0 chr5 17922131 17922161 -134615098 + AT_rich Low_complexity Low_complexity 1 30 0 5 721 180 340 0 0 chr5 17922443 17922490 -134614769 - L3 LINE CR1 -22 4467 4421 5 721 21 0 0 0 chr5 17922965 17922986 -134614273 + AT_rich Low_complexity Low_complexity 1 21 0 5 721 3212 250 81 17 chr5 17922993 17924278 -134612981 + L1_Mur3 LINE L1 120 1495 -4385 5 721 3076 238 35 8 chr5 17924282 17925007 -134612252 + Lx6 LINE L1 6556 7299 -161 5 721 7925 35 3 1 chr5 17925014 17926058 -134611201 - L1Md_F2 LINE L1 -4 6578 5533 5 721 354 221 186 0 chr5 17926059 17926172 -134611087 + Lx6 LINE L1 7319 7452 -8 5 721 851 158 115 0 chr5 17926206 17926371 -134610888 + B2_Mm2 SINE B2 1 184 -11 5 721 23 0 0 0 chr5 17926406 17926429 -134610830 + AT_rich Low_complexity Low_complexity 1 23 0 5 721 418 250 143 38 chr5 17927591 17927724 -134609535 - B1F SINE Alu -1 148 2 5 721 180 0 0 0 chr5 17927750 17927770 -134609489 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 721 1658 142 114 10 chr5 17928195 17928493 -134608766 - ORR1B1 LTR MaLR -25 369 41 5 721 283 346 15 66 chr5 17928700 17928836 -134608423 - RMER10B LTR ERVL 0 398 270 5 721 327 113 0 0 chr5 17928858 17928920 -134608339 + (T)n Simple_repeat Simple_repeat 1 62 0 5 721 753 71 0 0 chr5 17930769 17930882 -134606377 + (CA)n Simple_repeat Simple_repeat 2 114 0 5 721 329 167 61 0 chr5 17931411 17931477 -134605782 - RLTR24 LTR ERV1 0 529 460 5 721 1861 113 12 65 chr5 17931497 17931819 -134605440 - RLTR24 LTR ERV1 -175 354 50 5 721 491 264 36 23 chr5 17932716 17932937 -134604322 + LTR37A LTR ERV1 191 414 -12 5 721 471 100 0 0 chr5 17933428 17933498 -134603761 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 721 2090 77 0 0 chr5 17933755 17934027 -134603232 + L1_Mus2 LINE L1 6294 6565 -1 5 721 503 118 36 18 chr5 17934255 17934367 -134602892 + (TCTA)n Simple_repeat Simple_repeat 4 117 0 5 721 243 340 9 36 chr5 17934384 17934494 -134602765 - MLT2B4 LTR ERVL -40 527 421 5 721 600 335 69 11 chr5 17934522 17934797 -134602462 - MLT2B4 LTR ERVL -265 291 1 5 721 1266 99 33 0 chr5 17935047 17935228 -134602031 - B2_Mm2 SINE B2 -8 187 1 6 721 540 158 0 0 chr5 17935242 17935337 -134601922 + A-rich Low_complexity Low_complexity 3 97 0 6 721 13411 82 4 11 chr5 17935548 17938244 -134599015 - L1_Mus2 LINE L1 0 6566 3894 6 721 1475 176 45 103 chr5 17938372 17938752 -134598507 + ORR1B1 LTR MaLR 29 386 -8 6 721 1202 213 73 26 chr5 17938756 17939069 -134598190 + ORR1B1-int LTR MaLR 1 328 -1635 6 721 193 326 21 75 chr5 17939454 17939547 -134597712 - L2c LINE L2 -38 3349 3262 6 721 546 82 0 0 chr5 17939595 17939680 -134597579 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 721 523 323 62 31 chr5 17939734 17939961 -134597298 - B4 SINE B4 -50 242 9 6 721 219 288 0 0 chr5 17940137 17940196 -134597063 - B1F SINE Alu -16 133 75 6 721 387 0 0 0 chr5 17940851 17940894 -134596365 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 721 308 164 15 0 chr5 17941135 17941202 -134596057 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 6 721 505 0 31 0 chr5 17941322 17941387 -134595872 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 6 721 433 269 46 98 chr5 17941432 17941605 -134595654 - RSINE1 SINE B4 0 165 2 6 721 346 138 169 0 chr5 17942060 17942125 -134595134 - Lx4A LINE L1 -119 6939 6864 6 721 249 242 11 4 chr5 17943161 17943241 -134594018 - B1_Mur4 SINE Alu -7 140 59 6 721 671 280 146 87 chr5 17943582 17943936 -134593323 + MTE2a LTR MaLR 1 374 0 6 721 514 239 103 15 chr5 17944774 17944910 -134592349 + B1_Mur3 SINE Alu 1 148 -1 6 721 353 158 21 0 chr5 17945396 17945491 -134591768 + (TCTG)n Simple_repeat Simple_repeat 4 100 0 6 721 825 177 191 16 chr5 17945651 17945840 -134591419 - URR1B DNA MER1_type 0 225 4 6 721 471 360 72 4 chr5 17946246 17946757 -134590502 - L1MA4 LINE L1 -297 6003 5458 6 721 360 310 96 75 chr5 17946757 17947133 -134590126 - L1ME1 LINE L1 -183 5996 5613 6 721 1678 176 65 55 chr5 17947335 17947738 -134589521 + RMER10A LTR ERVL 1 407 -35 6 721 1787 116 47 13 chr5 17948249 17948547 -134588712 + Lx2B LINE L1 6692 6999 -1 6 721 312 291 130 83 chr5 17949791 17950208 -134587051 + MLT1E1A LTR MaLR 83 635 -45 6 721 1149 178 5 14 chr5 17950342 17950553 -134586706 + B3 SINE B2 2 210 -6 6 721 241 260 80 27 chr5 17950578 17950653 -134586606 + ID4_ SINE ID 2 80 -3 6 721 554 251 93 66 chr5 17950780 17950963 -134586296 + B3 SINE B2 7 194 -1 6 721 229 220 0 0 chr5 17950990 17951040 -134586219 + A-rich Low_complexity Low_complexity 1 50 0 6 721 4245 50 24 4 chr5 17952074 17952614 -134584645 + L1Md_F2 LINE L1 6031 6581 -1 6 721 1477 45 5 25 chr5 17952645 17952849 -134584410 + L1Md_F2 LINE L1 6382 6581 -1 6 721 26 93 0 0 chr5 17952955 17953030 -134584229 + AT_rich Low_complexity Low_complexity 1 75 0 6 721 2720 39 15 0 chr5 17953151 17953482 -134583777 - L1Md_F3 LINE L1 -14 6570 6235 6 721 1370 244 152 29 chr5 17953708 17954489 -134582770 + RMER1A Other Other 1 569 -461 6 721 315 94 0 86 chr5 17954875 17954968 -134582291 + CT-rich Low_complexity Low_complexity 3 87 0 6 721 227 250 0 0 chr5 17955296 17955348 -134581911 - MurSatRep1 Unknown Unknown -1853 284 233 6 721 305 111 37 0 chr5 17955348 17955402 -134581857 + (AGGGGG)n Simple_repeat Simple_repeat 4 59 0 6 721 466 158 126 0 chr5 17955402 17955497 -134581762 + B1_Mus2 SINE Alu 40 146 -1 6 721 356 263 41 8 chr5 17956531 17956717 -134580542 - L1MA5 LINE L1 -312 5991 5793 6 90 405 257 35 0 chr5 17956796 17956940 -134580319 - L1MA5 LINE L1 -522 5769 5621 6 722 1332 282 64 31 chr5 17957061 17957547 -134579712 - RMER5 LTR ERV1 0 534 33 6 722 1406 160 136 71 chr5 17957858 17958167 -134579092 + ORR1A4 LTR MaLR 1 329 0 6 722 1968 173 112 5 chr5 17958629 17959047 -134578212 + RLTR13D6 LTR ERVK 77 539 -363 6 722 563 26 0 50 chr5 17959047 17959127 -134578132 + ETnERV2-int LTR ERVK 7331 7406 0 6 722 2554 106 29 41 chr5 17959127 17959541 -134577718 + RLTR9E LTR ERVK 1 409 0 6 722 252 212 0 0 chr5 17959593 17959659 -134577600 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 722 335 318 73 16 chr5 17959954 17960146 -134577113 - L1MB1 LINE L1 -124 6044 5842 6 722 246 68 66 33 chr5 17960161 17960222 -134577037 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 6 722 335 203 13 51 chr5 17960229 17960307 -134576952 - HAL1-3A_ME LINE L1 -809 2049 1975 6 722 1778 185 111 3 chr5 17960321 17960662 -134576597 - ORR1B1 LTR MaLR -16 378 1 6 722 659 182 74 22 chr5 17960704 17960839 -134576420 - B4 SINE B4 -22 270 129 6 722 2568 185 41 26 chr5 17960958 17961499 -134575760 + RLTR31_Mur LTR ERVK 1 553 0 6 722 424 310 63 33 chr5 17961537 17961807 -134575452 - L1MB1 LINE L1 -385 5783 5506 6 722 1673 165 87 15 chr5 17964250 17964582 -134572677 + RMER10A LTR ERVL 7 362 -80 6 722 2437 31 0 20 chr5 17964675 17964972 -134572287 - L1_Mus1 LINE L1 0 6567 6277 6 722 422 257 65 14 chr5 17965086 17965224 -134572035 - B1F1 SINE Alu 0 149 5 6 722 199 130 0 36 chr5 17965586 17965642 -134571617 + (ACTG)n Simple_repeat Simple_repeat 2 55 0 6 722 235 229 180 88 chr5 17965647 17965886 -134571373 - RMER6C LTR ERVK -87 603 343 6 722 390 192 48 30 chr5 17965886 17966052 -134571207 + (ACTG)n Simple_repeat Simple_repeat 1 169 0 6 722 770 306 67 11 chr5 17966509 17966777 -134570482 + B4 SINE B4 2 284 -8 6 722 239 275 0 24 chr5 17966792 17966874 -134570385 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 722 227 54 27 0 chr5 17966874 17966911 -134570348 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 722 723 223 80 0 chr5 17966964 17967139 -134570120 + Lx7 LINE L1 7221 7409 -287 6 722 254 308 0 11 chr5 17967176 17967268 -134569991 + MuRRS4-int LTR ERV1 4360 4450 -3156 6 722 1663 280 19 8 chr5 17967571 17968104 -134569155 + MuRRS4-int LTR ERV1 3533 4015 -1048 6 722 352 298 22 27 chr5 17968930 17969147 -134568112 + MuRRS4-int LTR ERV1 4663 4820 -243 6 722 2635 103 167 0 chr5 17969290 17969746 -134567513 + RLTR47_MM LTR ERV1 1 532 0 6 722 1583 47 0 0 chr5 17969840 17970033 -134567226 + L1Md_T LINE L1 6390 6582 0 6 722 266 0 29 0 chr5 17970678 17970712 -134566547 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 6 722 1219 68 0 0 chr5 17970713 17970860 -134566399 - B1_Mus2 SINE Alu 0 147 1 6 722 1294 345 67 51 chr5 17970935 17973542 -134563717 - RLTR4_MM-int LTR ERV1 -2319 5282 2633 6 722 21 57 0 0 chr5 17974482 17974517 -134562742 + AT_rich Low_complexity Low_complexity 1 35 0 6 722 1256 211 24 24 chr5 17974572 17974824 -134562435 - RLTR23 LTR ERV1 0 430 179 6 722 516 105 0 0 chr5 17974834 17974910 -134562349 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 722 209 139 0 27 chr5 17974910 17974947 -134562312 + CT-rich Low_complexity Low_complexity 2 37 0 6 722 412 176 149 32 chr5 17974952 17975046 -134562213 - RLTR23 LTR ERV1 -325 105 1 6 722 363 280 38 95 chr5 17975047 17975205 -134562054 - B4 SINE B4 0 292 144 6 722 264 320 52 0 chr5 17975428 17975525 -134561734 - ID_B1 SINE B4 0 224 123 6 722 448 65 52 0 chr5 17975558 17975635 -134561624 - L1Md_F3 LINE L1 -1 6583 6503 6 722 201 136 67 19 chr5 17976914 17977019 -134560240 + (TA)n Simple_repeat Simple_repeat 1 110 0 6 722 3118 61 8 2 chr5 17977072 17977466 -134559793 - MTA_Mm LTR MaLR 0 396 1 6 722 946 223 10 19 chr5 17979165 17979371 -134557888 - B3 SINE B2 -12 204 1 6 722 321 287 64 112 chr5 17979585 17979773 -134557486 + MLT1E2 LTR MaLR 10 188 -439 6 722 471 296 23 0 chr5 17980263 17980395 -134556864 - ID_B1 SINE B4 -8 216 82 6 722 1784 137 191 11 chr5 17980600 17980955 -134556304 + MTC LTR MaLR 2 420 -1 6 722 207 0 0 0 chr5 17981247 17981270 -134555989 + (A)n Simple_repeat Simple_repeat 1 23 0 6 722 306 0 0 0 chr5 17981949 17981983 -134555276 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 722 333 0 0 0 chr5 17981983 17982019 -134555240 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 722 345 189 16 74 chr5 17982454 17982643 -134554616 + (TATAA)n Simple_repeat Simple_repeat 1 178 0 6 722 239 395 0 44 chr5 17982643 17982757 -134554502 - MLT1J1 LTR MaLR -294 150 42 6 722 2499 201 112 171 chr5 17984144 17984648 -134552611 - RMER19B LTR ERVK 0 902 448 6 722 243 0 0 0 chr5 17984648 17984675 -134552584 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 722 2499 201 112 171 chr5 17984675 17985129 -134552130 - RMER19B LTR ERVK -455 447 1 6 722 216 286 36 93 chr5 17985661 17985800 -134551459 + BC1_Mm scRNA scRNA 1 131 -21 6 722 396 0 0 0 chr5 17985979 17986023 -134551236 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 6 722 349 360 134 5 chr5 17986023 17986210 -134551049 - ID_B1 SINE B4 -12 212 2 6 722 227 279 0 14 chr5 17986455 17986524 -134550735 + GA-rich Low_complexity Low_complexity 3 70 0 6 722 877 290 206 16 chr5 17987059 17987423 -134549836 - RLTR16 LTR ERVK -72 433 1 6 722 274 189 0 98 chr5 17988258 17988340 -134548919 + T-rich Low_complexity Low_complexity 1 74 0 6 722 1188 157 110 37 chr5 17991416 17991651 -134545608 + RMER6C LTR ERVK 8 260 -430 6 722 393 263 255 45 chr5 17991651 17991918 -134545341 - RLTR22_Mur LTR ERVK -3 1845 1523 6 722 3011 71 66 2 chr5 17991958 17992368 -134544891 - L1_Mus1 LINE L1 0 6567 6132 6 722 2601 222 122 40 chr5 17992493 17992856 -134544403 - RLTR22_Mur LTR ERVK -814 994 582 6 722 1862 141 30 72 chr5 17992856 17993284 -134543975 + RMER17C LTR ERVK 1 410 0 6 722 2601 203 101 37 chr5 17993284 17993828 -134543431 - RLTR22_Mur LTR ERVK -1267 581 1 6 722 1670 180 86 38 chr5 17993828 17994245 -134543014 + RMER6C LTR ERVK 254 690 0 6 722 1844 70 19 4 chr5 17994282 17994542 -134542717 - L1_Mus3 LINE L1 -4 6634 6371 6 722 576 12 37 0 chr5 17994605 17994686 -134542573 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 6 722 24 0 0 0 chr5 17995997 17996021 -134541238 + AT_rich Low_complexity Low_complexity 1 24 0 6 722 288 296 93 0 chr5 17996128 17996290 -134540969 - L1MD2 LINE L1 -24 6335 6159 6 722 569 333 68 8 chr5 17996425 17996812 -134540447 - L1MD1 LINE L1 -172 6002 5595 6 722 239 173 0 19 chr5 17997221 17997274 -134539985 + CT-rich Low_complexity Low_complexity 1 52 0 6 722 418 132 0 42 chr5 17997280 17997351 -134539908 - B1_Mur2 SINE Alu -8 141 74 7 722 24 67 0 0 chr5 17997426 17997471 -134539788 + AT_rich Low_complexity Low_complexity 1 45 0 7 722 193 333 61 12 chr5 17998327 17998409 -134538850 + L2b LINE L2 3112 3197 -178 7 722 21 0 0 0 chr5 17998557 17998578 -134538681 + AT_rich Low_complexity Low_complexity 1 21 0 7 722 1050 96 0 0 chr5 17998888 17999034 -134538225 + B1_Mus1 SINE Alu 3 148 0 7 722 439 282 181 0 chr5 17999069 17999246 -134538013 + ID_B1 SINE B4 1 209 -15 7 722 2666 255 22 8 chr5 17999265 17999898 -134537361 + Lx5 LINE L1 6390 7031 -19 7 722 197 65 0 31 chr5 17999898 17999930 -134537329 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 7 722 4381 126 204 4 chr5 18000487 18001284 -134535975 - RMER17B LTR ERVK -1 957 1 1 722 188 86 0 28 chr5 18001706 18001742 -134535517 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 722 229 196 0 0 chr5 18001795 18001851 -134535408 + T-rich Low_complexity Low_complexity 1 56 0 3 722 237 182 0 0 chr5 18002339 18002394 -134534865 + CT-rich Low_complexity Low_complexity 3 57 0 4 722 234 0 0 0 chr5 18002430 18002456 -134534803 + (T)n Simple_repeat Simple_repeat 1 26 0 5 722 859 217 22 36 chr5 18003420 18003645 -134533614 - URR1A DNA MER1_type 0 226 5 6 722 750 277 6 0 chr5 18004730 18004896 -134532363 - B3A SINE B2 -18 180 14 7 722 280 302 53 15 chr5 18005756 18005887 -134531372 + L2 LINE L2 666 801 -2618 8 722 254 324 192 11 chr5 18006159 18006346 -134530913 + L2 LINE L2 1079 1299 -2120 8 722 2026 163 41 0 chr5 18006375 18006743 -134530516 + ORR1B1 LTR MaLR 1 383 -11 9 722 888 270 20 0 chr5 18007273 18007477 -134529782 + B3 SINE B2 3 210 -6 1 722 24 53 0 0 chr5 18007481 18007519 -134529740 + AT_rich Low_complexity Low_complexity 1 38 0 1 722 319 306 47 39 chr5 18008871 18009000 -134528259 + RMER10B LTR ERVL 269 398 0 1 722 195 305 73 0 chr5 18009173 18009255 -134528004 + L2 LINE L2 2308 2395 -1024 8 722 327 295 238 0 chr5 18009339 18009461 -134527798 - RSINE1 SINE B4 -13 152 2 1 722 288 353 65 14 chr5 18009480 18009618 -134527641 + L2 LINE L2 2406 2550 -869 8 722 236 294 0 0 chr5 18009793 18009861 -134527398 - ID4_ SINE ID -13 70 3 1 722 300 111 0 0 chr5 18009871 18009916 -134527343 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 1 722 252 357 116 27 chr5 18009957 18010104 -134527155 + MTD LTR MaLR 1 160 -259 1 722 390 314 3 36 chr5 18010222 18010358 -134526901 - B4 SINE B4 -95 129 2 1 722 512 287 32 26 chr5 18011839 18011993 -134525266 - RSINE1 SINE B4 -6 159 5 1 722 44 0 0 0 chr5 18013192 18013236 -134524023 + AT_rich Low_complexity Low_complexity 1 44 0 1 722 3230 39 5 0 chr5 18013281 18013664 -134523595 - IAPEY_LTR LTR ERVK 0 385 1 2 722 339 25 0 0 chr5 18014079 18014119 -134523140 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 722 379 264 39 99 chr5 18014354 18014535 -134522724 + RLTR40 LTR ERVK 125 294 -523 2 722 423 0 0 0 chr5 18014537 18014584 -134522675 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 722 225 0 0 0 chr5 18014584 18014608 -134522651 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 722 205 205 0 0 chr5 18015263 18015302 -134521957 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 722 461 252 117 0 chr5 18015700 18015811 -134521448 + ID_B1 SINE B4 81 204 -20 2 722 816 250 99 19 chr5 18016540 18017101 -134520158 + L1_Rod LINE L1 899 1515 -4332 2 722 1136 253 169 98 chr5 18017102 18017509 -134519750 + MT2A LTR ERVL 1 436 -97 2 722 751 181 165 5 chr5 18017573 18017779 -134519480 + L1_Rod LINE L1 1668 1906 -3941 2 722 3925 206 66 26 chr5 18017788 18018657 -134518602 + RMER13B LTR ERVK 1 903 -5 2 722 261 280 203 16 chr5 18018679 18018871 -134518388 + L1_Rod LINE L1 1921 2148 -3699 2 722 347 274 56 8 chr5 18018882 18019007 -134518252 - Lx7 LINE L1 -5 7691 7561 3 722 1752 236 54 105 chr5 18019167 18019816 -134517443 - Lx7 LINE L1 -78 7618 7003 3 722 2913 229 78 30 chr5 18019811 18020519 -134516740 + Lx6 LINE L1 6227 6968 -492 3 722 690 162 68 0 chr5 18020562 18020679 -134516580 + B1_Mur4 SINE Alu 25 149 -1 3 722 1570 16 10 26 chr5 18020777 18020970 -134516289 + B2_Mm1a SINE B2 2 191 -2 3 722 798 243 78 107 chr5 18021070 18021438 -134515821 - Lx7 LINE L1 -16 7680 7111 3 722 3753 247 74 7 chr5 18021530 18022534 -134514725 - Lx7 LINE L1 -860 6836 5766 3 722 1451 207 42 24 chr5 18023602 18023939 -134513320 - Lx7 LINE L1 -90 5790 5448 3 722 612 206 50 0 chr5 18023939 18024080 -134513179 - Lx7 LINE L1 -678 5202 5055 3 722 1528 50 0 0 chr5 18024117 18024299 -134512960 + L1Md_F2 LINE L1 5405 5586 -297 3 722 8328 30 1 2 chr5 18024300 18025284 -134511975 + L1Md_F2 LINE L1 5588 6570 -12 3 722 801 284 120 81 chr5 18025628 18026501 -134510758 - L1M3 LINE L1 -1457 4683 3777 3 722 4638 102 109 1 chr5 18026503 18027221 -134510038 - L1_Mus3 LINE L1 -1 6637 5843 3 722 5375 115 30 22 chr5 18027227 18028795 -134508464 - L1VL1 LINE L1 -1919 1779 192 3 722 535 281 43 118 chr5 18028811 18029158 -134508101 - L1M3 LINE L1 -2381 3762 3442 3 722 7766 162 22 42 chr5 18029861 18030763 -134506496 + L1VL4 LINE L1 384 1230 -2329 3 722 1848 82 39 8 chr5 18030763 18031022 -134506237 - L1Md_F2 LINE L1 -13 6569 6303 4 722 7766 148 8 50 chr5 18031022 18031089 -134506170 + L1VL4 LINE L1 1231 1297 -2262 3 722 1195 68 0 0 chr5 18031089 18031236 -134506023 + B1_Mus2 SINE Alu 1 147 0 4 722 7766 148 8 50 chr5 18031236 18032311 -134504948 + L1VL4 LINE L1 1298 2362 -1197 3 722 612 306 5 58 chr5 18033054 18033262 -134503997 + B3A SINE B2 2 198 0 4 722 244 247 218 40 chr5 18033443 18033544 -134503715 + PB1D9 SINE Alu 1 119 -1 4 722 859 186 108 11 chr5 18033586 18033771 -134503488 - B3 SINE B2 0 216 14 4 722 632 252 75 0 chr5 18033847 18034006 -134503253 - MTE2a LTR MaLR -3 376 206 4 722 23 0 0 0 chr5 18034710 18034733 -134502526 + AT_rich Low_complexity Low_complexity 1 23 0 4 722 234 312 56 117 chr5 18037812 18038026 -134499233 - MTE2a LTR MaLR -150 209 9 4 722 704 202 16 0 chr5 18038362 18038491 -134498768 - Lx9 LINE L1 -374 7270 7140 4 722 2042 313 76 67 chr5 18038548 18039643 -134497616 - Lx9 LINE L1 -239 7405 6301 4 722 180 225 92 66 chr5 18039892 18039968 -134497291 + L4 LINE RTE 1165 1242 -787 4 722 719 224 69 15 chr5 18040288 18040598 -134496661 - Lx9 LINE L1 -1629 6015 5660 4 722 5916 154 26 42 chr5 18040623 18041296 -134495963 - Lx LINE L1 -2 6652 5994 5 722 2580 44 2 191 chr5 18041296 18041773 -134495486 + RLTR10 LTR ERVK 1 387 -3 5 722 5916 164 27 25 chr5 18041773 18042512 -134494747 - Lx LINE L1 -661 5993 5241 5 722 40019 18 1 10 chr5 18042521 18048703 -134488556 - L1Md_A LINE L1 -1 6581 465 5 722 19675 164 37 16 chr5 18048704 18053315 -134483944 - Lx LINE L1 -617 5266 542 5 722 232 125 31 0 chr5 18053364 18053428 -134483831 + T-rich Low_complexity Low_complexity 1 66 0 5 722 1044 84 0 0 chr5 18053430 18053572 -134483687 - B1_Mus1 SINE Alu 0 148 7 5 722 2260 274 67 57 chr5 18053572 18053913 -134483346 - L1_Rod LINE L1 -2583 3264 2914 5 722 216 0 0 0 chr5 18053913 18053937 -134483322 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 722 333 0 0 0 chr5 18053937 18053973 -134483286 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 722 2260 274 67 57 chr5 18053973 18054743 -134482516 - L1_Rod LINE L1 -2934 2913 2141 5 722 260 235 18 105 chr5 18054751 18054922 -134482337 + L1_Mur2 LINE L1 1607 1762 -4118 5 722 24325 124 30 16 chr5 18054930 18057120 -134480139 - L1_Mus3 LINE L1 0 6638 4435 5 722 3663 48 4 0 chr5 18057120 18057574 -134479685 - L1_Mus1 LINE L1 0 6567 6112 6 722 24325 153 31 25 chr5 18057574 18060153 -134477106 - L1_Mus3 LINE L1 -1449 4434 1819 5 722 2741 92 30 117 chr5 18060153 18060681 -134476578 + RLTR45 LTR ERVK 1 482 0 6 722 24325 167 39 17 chr5 18060681 18061778 -134475481 - L1_Mus3 LINE L1 -4065 1818 693 5 722 1935 226 205 38 chr5 18061800 18062508 -134474751 + L1_Mur2 LINE L1 1761 2586 -3294 5 722 3732 236 32 122 chr5 18062521 18064235 -134473024 + L1_Mur2 LINE L1 2992 4542 -1335 5 722 217 51 0 49 chr5 18066097 18066138 -134471121 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 6 722 1606 85 0 0 chr5 18066691 18066903 -134470356 + L1_Mus2 LINE L1 6353 6564 -2 6 722 906 79 63 14 chr5 18067195 18067337 -134469922 + RLTR9E LTR ERVK 1 149 -260 6 722 225 258 149 79 chr5 18067205 18067420 -134469839 + RLTR28 LTR ERVL 19 248 -276 6 722 443 125 0 0 chr5 18067420 18067492 -134469767 + RLTR45-int LTR ERVK 2591 2662 -4582 6 722 5035 176 57 35 chr5 18067475 18068878 -134468381 + ETnERV2-int LTR ERVK 1067 3448 -3958 6 722 2902 114 22 9 chr5 18069142 18069593 -134467666 + ETnERV2-int LTR ERVK 3441 3897 -3509 6 722 1888 211 47 91 chr5 18069588 18070422 -134466837 + MMETn-int LTR ERVK 2611 3141 -1703 6 722 346 109 0 59 chr5 18070518 18070586 -134466673 + RLTR45-int LTR ERVK 6009 6072 -1172 6 722 1541 133 29 4 chr5 18070599 18070841 -134466418 + ETnERV3-int LTR ERVK 5529 5776 -32 6 722 2053 176 153 4 chr5 18070860 18071329 -134465930 + RLTR13D6 LTR ERVK 1 539 -363 6 722 580 26 0 62 chr5 18071329 18071410 -134465849 + ETnERV2-int LTR ERVK 7331 7406 0 7 722 2587 126 7 24 chr5 18071410 18071826 -134465433 + RLTR9E LTR ERVK 1 409 0 7 722 2396 176 160 44 chr5 18072010 18072624 -134464635 - RMER6C LTR ERVK 0 690 6 7 722 398 141 64 21 chr5 18073224 18073318 -134463941 - L1_Mus3 LINE L1 -1 6637 6540 7 722 285 289 8 130 chr5 18073419 18073550 -134463709 + PB1D10 SINE Alu 3 117 0 7 722 283 358 32 24 chr5 18073832 18073955 -134463304 + ID_B1 SINE B4 84 207 -17 7 722 299 247 24 0 chr5 18074058 18074143 -134463116 - L1MD3 LINE L1 -398 7597 7511 7 722 294 276 56 22 chr5 18074292 18074381 -134462878 + MER58A DNA MER1_type 7 98 -126 7 722 407 354 86 51 chr5 18075351 18075723 -134461536 + L2a LINE L2 3003 3387 -39 7 722 320 305 125 7 chr5 18076717 18076869 -134460390 + L1MD LINE L1 5264 5433 -2562 7 722 3086 63 8 2 chr5 18076886 18077284 -134459975 + MTB LTR MaLR 1 400 0 7 722 358 102 0 0 chr5 18077704 18077753 -134459506 + RMER20B LTR ERVK 11 59 -568 8 722 908 32 31 31 chr5 18077767 18077929 -134459330 + (TTCTC)n Simple_repeat Simple_repeat 4 165 0 8 722 731 83 0 18 chr5 18077941 18078051 -134459208 - B1_Mus2 SINE Alu 0 147 40 8 722 1938 214 144 20 chr5 18078042 18078534 -134458725 + RMER20B LTR ERVK 75 627 0 8 722 1002 274 104 52 chr5 18078610 18079285 -134457974 + L1MC2 LINE L1 5609 6318 -26 8 722 298 317 20 0 chr5 18079538 18079639 -134457620 + B3 SINE B2 108 210 -6 8 722 1753 292 74 32 chr5 18080092 18080824 -134456435 + RMER1B Other Other 13 525 -541 8 722 1287 292 68 31 chr5 18080833 18081010 -134456249 + RMER1A Other Other 2 130 -900 8 722 282 95 0 0 chr5 18081010 18081052 -134456207 + (TGG)n Simple_repeat Simple_repeat 1 42 0 8 722 1376 272 39 17 chr5 18081052 18081538 -134455721 + RMER1A Other Other 1 472 -558 8 722 249 374 6 6 chr5 18082534 18082714 -134454545 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 722 227 271 33 33 chr5 18082675 18082797 -134454462 + (TATG)n Simple_repeat Simple_repeat 4 125 0 8 722 405 0 0 0 chr5 18082824 18082869 -134454390 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 722 398 317 0 54 chr5 18082873 18083003 -134454256 - B4 SINE B4 -20 272 150 9 722 369 0 0 0 chr5 18083281 18083322 -134453937 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 722 1010 305 45 26 chr5 18083325 18083702 -134453557 - Lx7 LINE L1 -391 7305 6922 9 722 219 36 0 0 chr5 18083941 18083969 -134453290 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 9 722 4985 46 0 0 chr5 18083971 18084575 -134452684 - L1Md_F2 LINE L1 -346 6236 5633 9 722 2752 61 3 8 chr5 18084575 18084936 -134452323 + L1Md_F2 LINE L1 6212 6570 -12 9 722 22 80 0 0 chr5 18085099 18085149 -134452110 + AT_rich Low_complexity Low_complexity 1 50 0 9 722 219 200 22 0 chr5 18085223 18085268 -134451991 + (TATG)n Simple_repeat Simple_repeat 1 46 0 9 722 308 370 60 100 chr5 18085268 18085284 -134451975 - B4A SINE B4 0 292 279 9 722 603 74 0 0 chr5 18085284 18085365 -134451894 + (GA)n Simple_repeat Simple_repeat 2 82 0 9 722 308 370 60 100 chr5 18085365 18085648 -134451611 - B4A SINE B4 -14 278 5 9 722 312 27 0 0 chr5 18085920 18085957 -134451302 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 722 334 298 85 62 chr5 18085975 18086104 -134451155 - RSINE1 SINE B4 -21 144 13 1 722 558 336 90 4 chr5 18087039 18087305 -134449954 - B4A SINE B4 -1 291 3 1 722 27 0 0 0 chr5 18087349 18087376 -134449883 + AT_rich Low_complexity Low_complexity 1 27 0 1 722 962 130 25 0 chr5 18087377 18087539 -134449720 + BGLII_A LTR ERVK 1 166 -279 1 90 2295 229 73 85 chr5 18087536 18088041 -134449218 + RLTR40 LTR ERVK 60 550 -267 1 723 363 23 0 0 chr5 18088041 18088085 -134449174 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 723 2295 229 73 85 chr5 18088085 18088343 -134448916 + RLTR40 LTR ERVK 551 814 -3 1 723 228 315 25 107 chr5 18088336 18088457 -134448802 - RLTR8 LTR ERVK -3 362 252 1 723 472 318 81 6 chr5 18088742 18088916 -134448343 + Lx8 LINE L1 7017 7203 -270 1 723 2072 204 50 20 chr5 18088919 18089430 -134447829 - RLTR25A LTR ERVK 0 1028 460 1 723 210 174 0 0 chr5 18090094 18090140 -134447119 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 723 7396 95 8 2 chr5 18090293 18091931 -134445328 + L1_Mus1 LINE L1 4917 6567 0 1 723 1809 88 0 1 chr5 18091936 18092310 -134444949 + L1VL4 LINE L1 753 1125 -2434 1 723 2955 183 21 51 chr5 18092314 18093598 -134443661 - L1VL4 LINE L1 -2108 1451 216 1 723 251 109 0 21 chr5 18094235 18094268 -134442991 + (ATG)n Simple_repeat Simple_repeat 2 33 0 1 723 3225 56 2 0 chr5 18094268 18094663 -134442596 + MTA_Mm LTR MaLR 1 396 0 1 723 251 109 0 21 chr5 18094663 18094676 -134442583 + (ATG)n Simple_repeat Simple_repeat 1 13 0 1 723 39 22 0 0 chr5 18096037 18096083 -134441176 + AT_rich Low_complexity Low_complexity 1 46 0 1 723 490 335 17 32 chr5 18097368 18097559 -134439700 + MIR SINE MIR 7 197 -71 1 723 358 222 11 0 chr5 18097648 18097738 -134439521 - MERVL_2A-int LTR ERVL -14 5747 5657 1 723 327 274 49 62 chr5 18097738 18097882 -134439377 - ORR1A3-int LTR MaLR -1309 654 513 1 723 3007 204 90 16 chr5 18097904 18099148 -134438111 - MERVL_2A-int LTR ERVL -204 5557 4193 1 723 14148 189 53 22 chr5 18099153 18099764 -134437495 - MERVL_2A-int LTR ERVL -2762 2999 2332 1 723 2851 60 5 0 chr5 18099764 18100132 -134437127 + L1_Mus1 LINE L1 6198 6567 0 1 723 14148 189 53 22 chr5 18100132 18102427 -134434832 - MERVL_2A-int LTR ERVL -3430 2331 2 1 723 401 190 10 0 chr5 18102474 18102574 -134434685 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 723 646 298 133 86 chr5 18102575 18102776 -134434483 - MT2A LTR ERVL -44 489 249 1 723 2623 20 191 0 chr5 18102776 18103121 -134434138 + IAPLTR2a LTR ERVK 1 411 0 1 723 646 298 133 86 chr5 18103121 18103385 -134433874 - MT2A LTR ERVL -285 248 2 1 723 335 314 51 0 chr5 18104424 18104542 -134432717 + MER67D LTR ERV1 2 125 -389 1 723 27 49 0 0 chr5 18104552 18104593 -134432666 + AT_rich Low_complexity Low_complexity 1 41 0 1 723 10344 151 49 117 chr5 18104647 18106855 -134430404 - Lx4B LINE L1 -29 7029 4728 1 723 270 0 0 0 chr5 18106855 18106885 -134430374 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 723 10344 145 54 209 chr5 18106885 18107777 -134429482 - Lx4B LINE L1 -1150 4727 3901 1 723 1705 254 69 7 chr5 18107777 18108241 -134429018 + RLTR16 LTR ERVK 1 493 -12 1 723 10344 145 54 209 chr5 18108241 18109154 -134428105 - Lx4B LINE L1 -1150 3900 3053 1 723 2590 226 22 13 chr5 18109167 18109722 -134427537 + RLTR20B1 LTR ERVK 2 561 -2 1 723 1525 28 28 0 chr5 18109774 18109954 -134427305 + B2_Mm1a SINE B2 2 186 -7 1 723 327 104 0 0 chr5 18110015 18110063 -134427196 + (T)n Simple_repeat Simple_repeat 1 48 0 1 723 323 44 22 0 chr5 18110492 18110537 -134426722 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 723 315 0 0 0 chr5 18110537 18110571 -134426688 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 723 419 189 122 31 chr5 18110571 18110669 -134426590 + L1_Mm LINE L1 5488 5594 -289 1 723 549 0 0 0 chr5 18110683 18110744 -134426515 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 1 723 314 89 0 0 chr5 18110946 18110991 -134426268 - MYSERV16_I-int LTR ERVK -2073 253 209 1 723 5817 152 52 7 chr5 18111013 18111446 -134425813 + Lx2 LINE L1 5466 5909 -1088 1 723 315 0 0 0 chr5 18111446 18111481 -134425778 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 723 5817 144 57 4 chr5 18111481 18112103 -134425156 + Lx2 LINE L1 5910 6582 -415 1 723 1252 204 54 8 chr5 18112116 18112264 -134424995 + RLTR20B2 LTR ERVK 305 464 -96 1 723 459 0 0 0 chr5 18112264 18112315 -134424944 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 723 1252 204 54 8 chr5 18112315 18112408 -134424851 + RLTR20B2 LTR ERVK 465 557 -3 1 723 269 172 0 9 chr5 18112654 18112719 -134424540 - Lx4B LINE L1 -3126 3020 2950 1 723 458 239 188 0 chr5 18113070 18113246 -134424013 + B3 SINE B2 1 209 -7 1 723 384 306 124 0 chr5 18113639 18113760 -134423499 - B1_Mur3 SINE Alu -11 138 3 1 723 228 170 0 0 chr5 18113834 18113887 -134423372 + T-rich Low_complexity Low_complexity 6 58 0 1 723 262 48 0 67 chr5 18113887 18113925 -134423334 - B1_Mus2 SINE Alu 0 147 112 1 723 1734 77 0 8 chr5 18113925 18114161 -134423098 + L1Md_F2 LINE L1 6348 6581 -1 1 723 27466 121 14 6 chr5 18114616 18118051 -134419208 - L1_Mus3 LINE L1 -8 6630 3180 1 723 228 35 0 0 chr5 18118051 18118080 -134419179 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 723 27466 122 14 6 chr5 18118080 18121004 -134416255 - L1_Mus3 LINE L1 -2704 3179 217 1 723 1267 21 0 0 chr5 18122307 18122452 -134414807 + B1_Mus2 SINE Alu 1 145 -2 1 723 243 0 0 0 chr5 18122452 18122479 -134414780 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 723 2087 281 29 36 chr5 18122655 18123632 -134413627 - RMER16-int LTR ERVK -458 4948 3979 1 723 1621 172 23 40 chr5 18123861 18124207 -134413052 - RMER16-int LTR ERVK -1416 3990 3651 1 723 27 110 0 0 chr5 18124319 18124437 -134412822 + AT_rich Low_complexity Low_complexity 1 118 0 1 723 384 22 0 0 chr5 18124453 18124498 -134412761 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 723 1446 144 78 15 chr5 18124617 18125077 -134412182 - RLTR19-int LTR ERVK -2168 3969 3481 1 723 941 177 23 0 chr5 18125081 18125256 -134412003 - B2_Mm2 SINE B2 -15 180 2 1 723 358 259 0 12 chr5 18126764 18126850 -134410409 + B1_Mur3 SINE Alu 1 85 -64 1 723 212 0 36 0 chr5 18127394 18127422 -134409837 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 723 181 225 93 53 chr5 18127478 18127553 -134409706 + L4 LINE RTE 1307 1384 -645 1 723 1703 224 28 11 chr5 18129024 18129458 -134407801 + BGLII_B LTR ERVK 1 441 0 1 723 230 316 25 0 chr5 18130117 18130196 -134407063 + MER5A DNA MER1_type 1 81 -108 1 723 489 34 0 0 chr5 18130291 18130350 -134406909 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 723 239 242 16 0 chr5 18130351 18130413 -134406846 + GA-rich Low_complexity Low_complexity 1 63 0 1 723 397 310 106 11 chr5 18133000 18133189 -134404070 + ID_B1 SINE B4 17 223 -1 1 723 1597 128 25 0 chr5 18133554 18133797 -134403462 - ORR1A3 LTR MaLR -77 249 1 1 723 642 195 164 98 chr5 18134581 18134631 -134402628 + RMER6B LTR ERVK 1 50 -411 1 723 3623 112 33 4 chr5 18134631 18135178 -134402081 - Lx LINE L1 -6 6648 6086 1 723 642 201 151 81 chr5 18135178 18135511 -134401748 + RMER6B LTR ERVK 51 461 0 1 723 3558 186 57 41 chr5 18135511 18136405 -134400854 + MYSERV6-int LTR ERVK 1 908 -8051 1 723 7411 42 11 1 chr5 18136406 18137290 -134399969 - RLTR13B1 LTR ERVK 0 893 1 1 723 20241 167 74 26 chr5 18137307 18142165 -134395094 - Lx4A LINE L1 -2 7056 2024 1 723 414 0 0 0 chr5 18142165 18142211 -134395048 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 723 20241 154 76 23 chr5 18142211 18142944 -134394315 - Lx4A LINE L1 -3854 2023 1180 1 723 4522 209 23 12 chr5 18142951 18144193 -134393066 - Lx5 LINE L1 -481 6569 5310 1 723 3833 189 23 3 chr5 18144184 18145044 -134392215 + Lx5 LINE L1 4426 5302 -575 1 723 310 213 120 0 chr5 18145435 18145510 -134391749 - ID SINE ID -140 84 1 1 723 886 34 0 0 chr5 18146061 18146178 -134391081 + L1Md_T LINE L1 6466 6582 0 1 723 288 0 0 0 chr5 18146802 18146834 -134390425 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 723 1365 212 20 36 chr5 18147834 18148170 -134389089 + ORR1D1 LTR MaLR 1 324 -54 1 723 6490 80 12 6 chr5 18148170 18149080 -134388179 - L1Md_F2 LINE L1 -42 6540 5625 1 723 270 250 0 0 chr5 18149082 18149154 -134388105 + T-rich Low_complexity Low_complexity 1 72 0 1 723 7474 69 7 3 chr5 18149156 18150939 -134386320 - L1Md_F2 LINE L1 -3 6579 4793 1 723 300 152 167 0 chr5 18150960 18151026 -134386233 + ORR1D1 LTR MaLR 308 384 0 1 723 8306 22 0 0 chr5 18151158 18152351 -134384908 - L1Md_T LINE L1 0 6582 5390 1 723 1581 145 415 16 chr5 18152619 18153111 -134384148 + RMER6C LTR ERVK 1 688 -2 1 723 244 127 0 191 chr5 18153191 18153259 -134384000 + MTC LTR MaLR 3 57 -364 1 723 1065 93 0 0 chr5 18155152 18155291 -134381968 + B1_Mus1 SINE Alu 1 139 -9 1 723 6816 58 0 1 chr5 18156069 18156964 -134380295 + L1Md_F2 LINE L1 4692 5585 -298 1 723 8135 44 7 7 chr5 18156965 18157959 -134379300 + L1Md_F2 LINE L1 5587 6580 -2 1 723 341 287 11 11 chr5 18158140 18158228 -134379031 - PB1D7 SINE Alu -6 114 27 1 723 3647 28 0 0 chr5 18158256 18158683 -134378576 - L1Md_A LINE L1 0 6582 6156 1 723 418 75 21 31 chr5 18158715 18158811 -134378448 + (CAAA)n Simple_repeat Simple_repeat 2 96 0 1 723 316 369 98 86 chr5 18159069 18159324 -134377935 - MTEa LTR MaLR -71 308 51 1 723 25 0 0 0 chr5 18159451 18159476 -134377783 + AT_rich Low_complexity Low_complexity 1 25 0 1 723 26 74 0 0 chr5 18159605 18159659 -134377600 + AT_rich Low_complexity Low_complexity 1 54 0 1 723 262 302 46 82 chr5 18159737 18159932 -134377327 - RLTR14 LTR ERV1 -40 342 155 1 723 192 77 0 0 chr5 18160591 18160617 -134376642 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 723 282 235 49 0 chr5 18160627 18160708 -134376551 + Lx9 LINE L1 7343 7427 -217 1 723 1932 218 82 81 chr5 18160739 18160867 -134376392 - Lx7 LINE L1 -179 7517 7402 1 723 231 114 0 0 chr5 18160867 18160902 -134376357 + (CAG)n Simple_repeat Simple_repeat 1 35 0 1 723 1932 218 82 81 chr5 18160902 18161441 -134375818 - Lx7 LINE L1 -295 7401 6849 1 723 1950 220 153 6 chr5 18161437 18162059 -134375200 + Lx9 LINE L1 6831 7543 -101 1 723 982 199 320 42 chr5 18162081 18162553 -134374706 + RLTR6_Mm LTR ERV1 1 603 -51 1 723 918 158 31 77 chr5 18162557 18162818 -134374441 + MMVL30-int LTR ERV1 4 252 -7526 1 723 4606 96 20 18 chr5 18162892 18163622 -134373637 + MMVL30-int LTR ERV1 738 1469 -2229 1 723 15932 62 17 18 chr5 18163685 18166012 -134371247 + MMVL30-int LTR ERV1 993 3698 0 1 723 768 196 108 108 chr5 18166012 18166479 -134370780 + RLTR6_Mm LTR ERV1 1 590 -64 1 723 768 175 0 0 chr5 18166775 18166935 -134370324 + CT-rich Low_complexity Low_complexity 2 161 0 1 723 4434 143 5 20 chr5 18168172 18168906 -134368353 + Lx3C LINE L1 6246 6968 -8 1 723 242 245 72 31 chr5 18169131 18169228 -134368031 - L1_Mur2 LINE L1 -685 5192 5092 1 723 829 358 26 14 chr5 18169265 18169687 -134367572 + Lx8 LINE L1 6490 6916 -557 2 723 33326 89 15 5 chr5 18169705 18175848 -134361411 - L1Md_F2 LINE L1 0 6582 380 2 723 408 318 161 5 chr5 18175878 18176096 -134361163 + Lx8 LINE L1 6934 7185 -288 2 723 1015 291 55 86 chr5 18176229 18176646 -134360613 + MTD LTR MaLR 3 406 -13 2 723 21 57 0 0 chr5 18176779 18176814 -134360445 + AT_rich Low_complexity Low_complexity 1 35 0 2 723 373 317 51 21 chr5 18177473 18177708 -134359551 - L1MA8 LINE L1 -97 6194 5953 2 723 405 152 46 37 chr5 18177708 18177817 -134359442 + RMER3D-int LTR ERVK 1049 1158 -1684 2 723 4136 142 48 13 chr5 18177817 18178549 -134358710 + RMER17B LTR ERVK 1 958 0 2 723 3842 174 68 77 chr5 18178551 18179558 -134357701 + RMER3D-int LTR ERVK 1155 2153 -689 2 723 684 309 17 77 chr5 18181323 18181455 -134355804 - MT2A LTR ERVL -241 292 167 2 723 1128 82 0 0 chr5 18181455 18181602 -134355657 - B1_Mus1 SINE Alu 0 148 2 2 723 684 309 17 77 chr5 18181602 18181704 -134355555 - MT2A LTR ERVL -367 166 72 2 723 262 347 39 46 chr5 18181644 18181774 -134355485 - MTE2a LTR MaLR -248 131 3 2 723 1297 197 11 33 chr5 18181845 18182118 -134355141 - RMER6C LTR ERVK 0 690 424 2 723 271 182 0 0 chr5 18182209 18182253 -134355006 - MT2B LTR ERVL -376 225 182 2 723 451 153 0 0 chr5 18182297 18182369 -134354890 - RMER6C LTR ERVK -647 73 2 2 723 189 225 0 24 chr5 18182667 18182708 -134354551 - MIR SINE MIR -80 128 89 2 723 486 47 174 12 chr5 18183480 18183566 -134353693 - L1Md_F2 LINE L1 0 6582 6483 2 723 6555 56 3 18 chr5 18183566 18184455 -134352804 - RLTR13A3 LTR ERVK 0 978 1 2 723 3679 65 0 0 chr5 18184455 18184920 -134352339 - L1Md_F2 LINE L1 -94 6488 6024 2 723 2810 55 3 0 chr5 18186026 18186371 -134350888 + ORR1A1 LTR MaLR 1 346 0 2 723 14751 174 50 55 chr5 18186749 18186763 -134350496 - L1_Mur1 LINE L1 -1141 4745 4732 2 723 348 266 129 69 chr5 18186763 18186965 -134350294 - B3 SINE B2 -2 214 1 2 723 14751 174 50 55 chr5 18186965 18186977 -134350282 - L1_Mur1 LINE L1 -1155 4731 4720 2 723 2975 137 58 45 chr5 18186977 18187551 -134349708 - Lx LINE L1 -1 6653 6073 2 723 14751 174 50 55 chr5 18187551 18189149 -134348110 - L1_Mur1 LINE L1 -1167 4719 3069 2 723 1114 94 6 6 chr5 18189149 18189320 -134347939 + (TTC)n Simple_repeat Simple_repeat 3 173 0 2 723 14751 174 50 55 chr5 18189320 18189427 -134347832 - L1_Mur1 LINE L1 -2818 3068 2924 2 723 1254 95 0 0 chr5 18189427 18189606 -134347653 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 723 14751 174 50 55 chr5 18189606 18190811 -134346448 - L1_Mur1 LINE L1 -2963 2923 1701 2 723 882 92 15 0 chr5 18190811 18190941 -134346318 - B1_Mus1 SINE Alu -2 146 15 2 723 14751 174 50 55 chr5 18190941 18191248 -134346011 - L1_Mur1 LINE L1 -2963 1700 1388 2 723 8322 31 12 1 chr5 18191262 18192589 -134344670 - L1Md_F2 LINE L1 0 6582 5241 2 723 5872 109 21 7 chr5 18192586 18193534 -134343725 - L1VL2 LINE L1 -2533 1082 121 2 723 341 266 93 70 chr5 18194315 18194370 -134342889 + Lx7 LINE L1 6916 6980 -493 2 723 2690 99 10 24 chr5 18194370 18194785 -134342474 + RLTR9E LTR ERVK 1 409 0 2 723 341 261 95 72 chr5 18194785 18194930 -134342329 + Lx7 LINE L1 6969 7123 -350 2 723 342 379 74 19 chr5 18195225 18195440 -134341819 - LTR40a LTR ERVL -288 231 5 2 723 306 0 0 0 chr5 18197482 18197516 -134339743 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 723 574 331 76 46 chr5 18197527 18197790 -134339469 - B4 SINE B4 -20 272 2 2 723 7799 161 30 7 chr5 18197803 18199345 -134337914 + Lx2 LINE L1 5422 6997 0 2 723 24 32 0 0 chr5 18201078 18201109 -134336150 + AT_rich Low_complexity Low_complexity 1 31 0 2 723 29 47 0 0 chr5 18201807 18201850 -134335409 + AT_rich Low_complexity Low_complexity 1 43 0 2 723 9188 111 27 34 chr5 18202557 18204796 -134332463 + L1_Mus3 LINE L1 4404 6631 -7 2 723 450 338 74 5 chr5 18205402 18205604 -134331655 - ID_B1 SINE B4 -3 221 6 2 723 2009 218 84 22 chr5 18205683 18206180 -134331079 - RLTR11A LTR ERVK 0 528 1 2 723 1581 255 71 23 chr5 18206775 18207270 -134329989 - Lx9 LINE L1 -879 6765 6283 2 723 308 253 0 35 chr5 18207327 18207413 -134329846 - MER33 DNA MER1_type -224 100 18 2 723 310 292 64 2 chr5 18208340 18208449 -134328810 - PB1D10 SINE Alu -7 120 1 2 723 440 300 178 29 chr5 18208462 18208743 -134328516 - MTE2a LTR MaLR -39 340 19 2 723 395 94 1 11 chr5 18208827 18208903 -134328356 - B1_Mur3 SINE Alu 0 149 43 2 723 1258 178 18 22 chr5 18209114 18209355 -134327904 + RLTR33 LTR ERVK 2 349 -150 2 723 35609 70 1 19 chr5 18209376 18215551 -134321708 - L1Md_F2 LINE L1 -12 6570 511 2 723 1605 203 53 6 chr5 18215553 18215956 -134321303 + RLTR33 LTR ERVK 211 678 0 2 723 627 278 0 58 chr5 18216298 18216470 -134320789 + RSINE1 SINE B4 4 165 0 2 723 3973 104 17 0 chr5 18216530 18217116 -134320143 - L1_Mus3 LINE L1 0 6638 6043 2 723 5702 110 1 0 chr5 18217116 18218150 -134319109 + L1_Mus3 LINE L1 5005 6040 -598 2 723 59 0 0 0 chr5 18218153 18218212 -134319047 + AT_rich Low_complexity Low_complexity 1 59 0 2 723 2252 173 204 3 chr5 18218334 18218616 -134318643 + RMER6C LTR ERVK 1 373 -317 2 723 195 42 0 0 chr5 18218616 18218640 -134318619 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 723 2252 173 204 3 chr5 18218640 18218930 -134318329 + RMER6C LTR ERVK 374 687 -3 2 724 239 341 66 52 chr5 18219354 18219490 -134317769 - Lx8 LINE L1 -461 7012 6875 2 724 260 327 26 0 chr5 18219929 18220042 -134317217 - Lx8 LINE L1 -596 6877 6762 2 724 620 401 38 3 chr5 18220313 18220653 -134316606 + MER74C LTR ERVL 10 361 -99 2 724 180 77 0 0 chr5 18220719 18220745 -134316514 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 2 724 23 0 0 0 chr5 18221062 18221085 -134316174 + AT_rich Low_complexity Low_complexity 1 23 0 2 724 414 0 0 0 chr5 18222108 18222154 -134315105 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 2 724 5853 61 0 0 chr5 18222373 18223111 -134314148 + L1Md_F2 LINE L1 5834 6571 -11 2 724 25 31 0 0 chr5 18223111 18223143 -134314116 + AT_rich Low_complexity Low_complexity 1 32 0 2 724 1358 340 43 11 chr5 18223791 18224347 -134312912 + Lx8 LINE L1 6186 6759 -714 2 724 360 234 13 0 chr5 18224427 18224504 -134312755 + B4A SINE B4 160 237 -55 2 724 1436 301 53 35 chr5 18224694 18224802 -134312457 - Lx9 LINE L1 -679 6965 6859 2 724 2631 93 61 0 chr5 18224802 18225179 -134312080 + MTB LTR MaLR 1 400 0 2 724 1436 301 53 35 chr5 18225179 18225614 -134311645 - Lx9 LINE L1 -786 6858 6412 2 724 345 322 93 29 chr5 18225871 18226117 -134311142 + L1_Mur3 LINE L1 5455 5716 -164 2 724 469 176 44 0 chr5 18226256 18226347 -134310912 - ORR1B1 LTR MaLR -254 140 46 2 724 498 130 110 0 chr5 18226385 18226485 -134310774 - Lx3A LINE L1 -4 6977 6867 2 724 33 0 0 0 chr5 18226591 18226624 -134310635 + AT_rich Low_complexity Low_complexity 1 33 0 2 724 230 91 0 64 chr5 18226771 18226818 -134310441 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2 724 1214 128 10 0 chr5 18227707 18227903 -134309356 - RMER17D2 LTR ERVK 0 809 612 2 724 572 200 94 16 chr5 18227903 18228030 -134309229 - ORR1C1 LTR MaLR -237 141 5 2 724 22 0 0 0 chr5 18228848 18228870 -134308389 + AT_rich Low_complexity Low_complexity 1 22 0 2 724 285 51 0 0 chr5 18228885 18228924 -134308335 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 724 1625 197 100 40 chr5 18229021 18229154 -134308105 + MTC LTR MaLR 1 163 -258 2 724 2045 125 19 22 chr5 18229154 18229474 -134307785 + ORR1A3 LTR MaLR 4 322 -4 2 724 1625 201 97 39 chr5 18229474 18229728 -134307531 + MTC LTR MaLR 164 403 -18 2 724 287 212 12 0 chr5 18230147 18230232 -134307027 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 724 577 313 5 66 chr5 18230240 18230452 -134306807 - B3A SINE B2 -17 199 1 2 724 5910 162 70 5 chr5 18230936 18232047 -134305212 + Lx3C LINE L1 5787 6969 -7 2 724 301 381 25 6 chr5 18232094 18232255 -134305004 - LTR40a LTR ERVL -267 252 89 2 724 3811 168 25 20 chr5 18232339 18233051 -134304208 - L1_Mur2 LINE L1 -81 5796 5081 2 724 2828 194 9 4 chr5 18233057 18233600 -134303659 - Lx2 LINE L1 -660 6337 5792 2 724 1628 179 30 7 chr5 18233600 18233899 -134303360 + Lx2A1 LINE L1 6625 6930 -78 2 724 385 265 13 87 chr5 18233900 18233950 -134303309 + MT2B2 LTR ERVL 117 164 -420 2 724 959 131 0 6 chr5 18233950 18234111 -134303148 + (GAA)n Simple_repeat Simple_repeat 2 161 0 2 724 385 265 13 87 chr5 18234111 18234209 -134303050 + MT2B2 LTR ERVL 165 253 -331 2 724 803 106 9 0 chr5 18234209 18234224 -134303035 + B1_Mus2 SINE Alu 2 115 -32 2 724 472 168 20 0 chr5 18234366 18234467 -134302792 + CT-rich Low_complexity Low_complexity 2 104 0 2 724 648 333 14 56 chr5 18234498 18234711 -134302548 - B4 SINE B4 -86 206 3 2 724 328 299 66 46 chr5 18234785 18234981 -134302278 + B3 SINE B2 2 201 -15 2 724 21 0 0 0 chr5 18235043 18235064 -134302195 + AT_rich Low_complexity Low_complexity 1 21 0 2 724 1810 124 62 0 chr5 18235306 18235597 -134301662 - Lx LINE L1 -2 6652 6344 2 724 1851 137 7 0 chr5 18235597 18235882 -134301377 + L1_Mm LINE L1 5543 5829 -54 2 724 519 308 75 0 chr5 18236494 18236653 -134300606 + RMER1C Other Other 634 804 -538 2 724 22 35 0 0 chr5 18237272 18237301 -134299958 + AT_rich Low_complexity Low_complexity 1 29 0 2 724 5684 132 26 4 chr5 18237411 18238374 -134298885 + L1_Mur2 LINE L1 4116 5099 -778 2 724 3933 2 0 0 chr5 18238370 18238812 -134298447 - L1_Mm LINE L1 -2089 3794 3353 2 724 6151 4 0 0 chr5 18238808 18239496 -134297763 + L1Md_A LINE L1 4899 5586 -297 2 724 9037 1 0 0 chr5 18239497 18240492 -134296767 + L1Md_A LINE L1 5588 6582 0 2 724 1305 121 0 5 chr5 18240497 18240704 -134296555 + L1_Mur2 LINE L1 5086 5291 -586 2 724 37254 21 1 7 chr5 18240701 18245910 -134291349 + L1Md_A LINE L1 413 5586 -297 2 724 8354 34 1 0 chr5 18245910 18246904 -134290355 + L1Md_A LINE L1 5587 6581 -1 2 724 1045 102 0 0 chr5 18246914 18247061 -134290198 + B1_Mus1 SINE Alu 2 148 0 2 724 3321 133 36 0 chr5 18247103 18247636 -134289623 + L1_Mur2 LINE L1 5285 5836 -41 2 724 2755 189 39 16 chr5 18247640 18248184 -134289075 + Lx4A LINE L1 6502 7057 -1 2 724 341 43 21 0 chr5 18248305 18248352 -134288907 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 724 219 36 0 0 chr5 18249333 18249361 -134287898 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 724 897 149 0 0 chr5 18249501 18249642 -134287617 - Lx5 LINE L1 -404 5767 5595 2 724 937 263 36 4 chr5 18249637 18249889 -134287370 + Lx4B LINE L1 6148 6407 -651 2 724 8484 154 10 8 chr5 18249893 18251432 -134285827 + Lx2 LINE L1 5458 6996 -1 2 724 1793 235 40 6 chr5 18251454 18251998 -134285261 + Lx4B LINE L1 6024 6859 -141 2 724 510 47 0 8 chr5 18252036 18252105 -134285154 + L1Md_F3 LINE L1 6203 6273 -311 3 724 253 262 15 15 chr5 18252915 18252981 -134284278 - ID4 SINE ID -15 68 3 3 724 230 221 58 14 chr5 18253309 18253378 -134283881 - Lx4B LINE L1 -41 7017 6946 3 724 1923 146 35 0 chr5 18253381 18253697 -134283562 - ORR1A2 LTR MaLR 0 327 1 3 724 477 296 75 6 chr5 18253779 18253939 -134283320 + RMER15 LTR ERVL 404 574 -1 3 724 7984 160 26 18 chr5 18255184 18257359 -134279900 - Lx4B LINE L1 0 7058 4858 3 724 441 353 95 17 chr5 18257360 18257597 -134279662 + MTD LTR MaLR 113 358 -42 3 724 425 319 9 26 chr5 18257640 18257756 -134279503 - RSINE1 SINE B4 -25 140 27 3 724 26 74 0 0 chr5 18257842 18257896 -134279363 + AT_rich Low_complexity Low_complexity 1 54 0 3 724 10320 88 19 8 chr5 18258223 18260174 -134277085 - Lx3_Mus LINE L1 0 7009 5025 3 724 5552 67 0 23 chr5 18260508 18261261 -134275998 - L1Md_Gf LINE L1 -5545 977 242 3 724 5007 43 0 0 chr5 18261872 18262476 -134274783 + L1Md_T LINE L1 5979 6582 0 3 724 3996 121 2 13 chr5 18263137 18263747 -134273512 - L1_Mus4 LINE L1 -6 6630 6028 3 724 4811 119 8 1 chr5 18263751 18264617 -134272642 + L1_Mus4 LINE L1 5074 5949 -687 3 724 1177 259 59 17 chr5 18264633 18264987 -134272272 - RMER1C Other Other -8 1334 966 3 724 450 322 99 11 chr5 18264994 18265349 -134271910 - L1M2 LINE L1 -3095 3048 2663 3 724 303 326 78 25 chr5 18265810 18266093 -134271166 - L1_Mur3 LINE L1 -3256 2624 2327 3 724 360 43 0 0 chr5 18266650 18266696 -134270563 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 724 1989 123 52 3 chr5 18268387 18268714 -134268545 - RLTR15 LTR ERVK -14 345 3 3 724 281 214 36 0 chr5 18268729 18268813 -134268446 - MYSERV16_I-int LTR ERVK -13 2313 2227 3 724 354 301 104 81 chr5 18268973 18269233 -134268026 - L1M2 LINE L1 -1888 4255 3990 3 724 320 321 17 43 chr5 18269248 18269365 -134267894 - L1M2 LINE L1 -2040 4103 3990 3 724 308 330 17 43 chr5 18269380 18269497 -134267762 - L1M2 LINE L1 -2040 4103 3990 3 724 301 299 29 0 chr5 18269620 18269740 -134267519 - L1M2 LINE L1 -3903 2240 2113 3 724 1138 276 73 9 chr5 18270350 18270679 -134266580 - MTD LTR MaLR 0 419 70 3 724 429 275 76 33 chr5 18270732 18270916 -134266343 - MTD-int LTR MaLR -2 1256 1065 3 724 3641 156 16 12 chr5 18270916 18271758 -134265501 - Lx3B LINE L1 -889 6084 5280 3 724 900 43 9 0 chr5 18271760 18271875 -134265384 - B1_Mus1 SINE Alu 0 148 33 3 724 993 113 37 21 chr5 18271875 18272065 -134265194 - Lx3B LINE L1 -559 5327 5135 3 724 5552 125 11 2 chr5 18272065 18272933 -134264326 + Lx3A LINE L1 6096 6971 -10 3 724 399 21 0 0 chr5 18272971 18273019 -134264240 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 724 816 296 85 9 chr5 18273074 18273564 -134263695 - MTD-int LTR MaLR -253 1005 376 3 724 437 191 12 0 chr5 18273537 18273621 -134263638 - MTD-int LTR MaLR -1143 115 31 3 724 382 275 18 9 chr5 18273640 18273750 -134263509 - MTD LTR MaLR 0 419 309 3 724 496 257 124 7 chr5 18273751 18273904 -134263355 + MTD LTR MaLR 231 401 -18 3 724 524 286 50 11 chr5 18273976 18274238 -134263021 + L1M3 LINE L1 5091 5362 -778 3 724 875 198 178 0 chr5 18274424 18274626 -134262633 - RLTR17 LTR ERVK -1 691 454 3 724 770 163 30 0 chr5 18274847 18274982 -134262277 + B1_Mus2 SINE Alu 9 147 0 3 724 25 0 0 0 chr5 18275947 18275972 -134261287 + AT_rich Low_complexity Low_complexity 1 25 0 3 724 264 224 0 17 chr5 18276918 18276977 -134260282 - B1F SINE Alu -89 60 3 3 724 402 57 0 0 chr5 18277492 18277545 -134259714 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 724 476 371 82 15 chr5 18277582 18277850 -134259409 - B4A SINE B4 -1 291 6 3 724 214 197 32 16 chr5 18278755 18278817 -134258442 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 3 724 307 366 0 89 chr5 18279009 18279030 -134258229 - RSINE1 SINE B4 0 165 149 3 724 233 57 29 0 chr5 18279030 18279065 -134258194 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 724 307 366 0 89 chr5 18279065 18279178 -134258081 - RSINE1 SINE B4 -17 148 43 3 724 1415 322 64 26 chr5 18279393 18279938 -134257321 - Lx5 LINE L1 -4 7046 6481 3 724 451 128 106 0 chr5 18279940 18280034 -134257225 - Lx7 LINE L1 -1827 5869 5766 3 724 2146 217 11 11 chr5 18280039 18280509 -134256750 + L1_Mur2 LINE L1 5284 5753 -124 3 724 2730 105 49 107 chr5 18281099 18281317 -134255942 - L1_Mus4 LINE L1 -277 6359 6140 3 724 1239 14 7 0 chr5 18281317 18281462 -134255797 + B1_Mm SINE Alu 2 147 0 3 724 2730 105 49 107 chr5 18281462 18281757 -134255502 - L1_Mus4 LINE L1 -497 6139 5876 3 724 1475 114 27 23 chr5 18281757 18282017 -134255242 + L1_Mus3 LINE L1 6371 6631 -7 3 724 992 321 52 0 chr5 18282179 18282522 -134254737 - MTE2b LTR MaLR -18 361 1 3 724 23 54 0 0 chr5 18282812 18282849 -134254410 + AT_rich Low_complexity Low_complexity 1 37 0 3 724 248 206 14 14 chr5 18284405 18284479 -134252780 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 724 314 23 23 0 chr5 18284482 18284525 -134252734 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 3 724 24 0 0 0 chr5 18285234 18285258 -134252001 + AT_rich Low_complexity Low_complexity 1 24 0 3 724 23 78 0 0 chr5 18285427 18285478 -134251781 + AT_rich Low_complexity Low_complexity 1 51 0 3 724 27 0 0 0 chr5 18286240 18286267 -134250992 + AT_rich Low_complexity Low_complexity 1 27 0 3 724 1051 181 45 0 chr5 18286437 18286636 -134250623 + RMER19C LTR ERVK 388 595 -16 3 724 7960 145 105 29 chr5 18286636 18288111 -134249148 + L1_Mur2 LINE L1 3201 4806 -1071 3 724 351 0 0 0 chr5 18288111 18288150 -134249109 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 724 7960 145 105 29 chr5 18288150 18288277 -134248982 + L1_Mur2 LINE L1 4807 4926 -951 3 724 744 204 112 5 chr5 18288285 18288482 -134248777 + Lx2 LINE L1 6779 6996 -1 3 724 6366 170 55 7 chr5 18288485 18289698 -134247561 + Lx4A LINE L1 5788 7058 0 3 724 23 33 0 0 chr5 18289772 18289802 -134247457 + AT_rich Low_complexity Low_complexity 1 30 0 3 724 183 139 0 0 chr5 18290709 18290745 -134246514 + (ATG)n Simple_repeat Simple_repeat 2 37 0 3 724 225 0 0 0 chr5 18290746 18290771 -134246488 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 724 25 0 0 0 chr5 18292268 18292293 -134244966 + AT_rich Low_complexity Low_complexity 1 25 0 3 724 556 14 27 0 chr5 18292667 18292740 -134244519 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 724 295 299 92 10 chr5 18292798 18292896 -134244363 - RSINE1 SINE B4 -57 108 3 3 724 3103 70 5 0 chr5 18294229 18294627 -134242632 + MTB LTR MaLR 1 400 0 3 724 668 258 158 46 chr5 18294869 18295045 -134242214 - ORR1D2 LTR MaLR -4 366 149 3 724 414 53 0 0 chr5 18295045 18295102 -134242157 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 3 724 668 258 158 46 chr5 18295102 18295123 -134242136 - ORR1D2 LTR MaLR -222 148 127 3 724 189 0 0 0 chr5 18295123 18295144 -134242115 + (GA)n Simple_repeat Simple_repeat 1 21 0 3 724 668 258 158 46 chr5 18295144 18295274 -134241985 - ORR1D2 LTR MaLR -244 126 2 3 724 402 134 0 0 chr5 18295731 18295798 -134241461 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 724 297 290 55 27 chr5 18296287 18296397 -134240862 + MER68 LTR ERVL 157 269 -294 3 724 653 319 108 36 chr5 18296643 18296975 -134240284 - LTR40c LTR ERVL -42 423 68 3 724 291 305 118 7 chr5 18298114 18298266 -134238993 + RLTR21 LTR ERVK 1085 1253 -319 3 724 21 71 0 0 chr5 18298903 18298945 -134238314 + AT_rich Low_complexity Low_complexity 1 42 0 3 724 22 0 0 0 chr5 18299024 18299046 -134238213 + AT_rich Low_complexity Low_complexity 1 22 0 3 724 21 82 0 0 chr5 18299335 18299384 -134237875 + AT_rich Low_complexity Low_complexity 1 49 0 3 724 2158 122 40 30 chr5 18299639 18300044 -134237215 - RLTR9E LTR ERVK 0 409 1 3 724 536 92 0 0 chr5 18300044 18300120 -134237139 - ETnERV2-int LTR ERVK 0 7406 7331 3 724 1237 164 15 7 chr5 18300329 18300540 -134236719 - ETnERV2-int LTR ERVK -977 6429 6222 3 724 2749 53 22 3 chr5 18300540 18300898 -134236361 + L1Md_F2 LINE L1 6216 6580 -2 3 724 7478 189 98 67 chr5 18300898 18302967 -134234292 - ETnERV2-int LTR ERVK -3316 4090 2054 3 724 192 254 143 0 chr5 18302967 18303030 -134234229 + MER5A DNA MER1_type 9 80 -109 3 724 7478 189 98 67 chr5 18303030 18304265 -134232994 - ETnERV2-int LTR ERVK -3316 2053 836 3 724 877 184 84 58 chr5 18304271 18304496 -134232763 - ETnERV2-int LTR ERVK -5035 371 141 3 724 327 146 0 18 chr5 18304950 18305006 -134232253 - RLTR45-int LTR ERVK -5099 2145 2091 3 724 444 254 77 38 chr5 18304996 18305218 -134232041 - MMETn-int LTR ERVK -2942 372 109 3 724 2244 133 29 29 chr5 18305326 18305735 -134231524 - RLTR9E LTR ERVK 0 409 1 3 724 3519 76 0 0 chr5 18305838 18306296 -134230963 + L1_Mus2 LINE L1 6108 6565 -1 3 724 1014 286 134 22 chr5 18306512 18306870 -134230389 + MTD LTR MaLR 8 405 -14 3 724 1101 323 131 36 chr5 18308069 18308581 -134228678 + Lx7 LINE L1 4449 5006 -874 3 724 5385 57 0 7 chr5 18308581 18309272 -134227987 + L1Md_F2 LINE L1 5897 6582 0 3 724 1101 323 131 36 chr5 18309272 18309878 -134227381 + Lx7 LINE L1 5007 5674 -206 3 724 824 17 25 17 chr5 18309965 18310084 -134227175 - L1Md_F2 LINE L1 -1 6581 6462 3 724 246 329 101 15 chr5 18310186 18310389 -134226870 + Lx7 LINE L1 5676 5909 -1787 3 724 1300 85 16 0 chr5 18310407 18310595 -134226664 - B2_Mm2 SINE B2 -3 192 2 3 724 984 225 191 56 chr5 18311155 18311549 -134225710 - Lx9 LINE L1 -557 7087 6640 3 724 315 0 0 0 chr5 18311549 18311584 -134225675 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 724 984 236 51 91 chr5 18311584 18311701 -134225558 - Lx9 LINE L1 -1005 6639 6527 3 724 600 14 0 0 chr5 18313385 18313454 -134223805 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 724 5099 214 111 103 chr5 18313583 18313925 -134223334 + L1_Mur3 LINE L1 1423 1770 -4110 3 724 1340 86 16 0 chr5 18313925 18314111 -134223148 - B2_Mm2 SINE B2 -6 189 1 3 724 5099 214 111 103 chr5 18314111 18314279 -134222980 + L1_Mur3 LINE L1 1771 2070 -3810 3 724 216 0 0 0 chr5 18314279 18314303 -134222956 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 724 488 30 15 0 chr5 18314303 18314368 -134222891 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 724 5099 214 111 103 chr5 18314368 18316108 -134221151 + L1_Mur3 LINE L1 2071 3693 -2187 3 724 1121 237 54 27 chr5 18316097 18316431 -134220828 + L1_Mur3 LINE L1 4889 5231 -649 3 724 2214 120 3 6 chr5 18316433 18316777 -134220482 + Lx LINE L1 6253 6595 -59 3 724 1266 154 62 37 chr5 18316843 18317085 -134220174 - MTC LTR MaLR -11 410 163 3 724 387 0 0 0 chr5 18317148 18317191 -134220068 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 3 724 1071 31 0 0 chr5 18317199 18317328 -134219931 - B1_Mm SINE Alu -18 129 1 3 724 423 0 0 0 chr5 18317667 18317714 -134219545 + (CTTG)n Simple_repeat Simple_repeat 2 48 0 3 724 276 224 53 60 chr5 18317815 18317948 -134219311 + CT-rich Low_complexity Low_complexity 1 132 0 3 724 21 0 0 0 chr5 18319992 18320013 -134217246 + AT_rich Low_complexity Low_complexity 1 21 0 3 724 23 54 0 0 chr5 18320863 18320900 -134216359 + AT_rich Low_complexity Low_complexity 1 37 0 3 724 772 222 99 31 chr5 18321010 18321201 -134216058 + ORR1D2 LTR MaLR 155 358 -12 3 724 2187 86 86 0 chr5 18321249 18321576 -134215683 - IAPEY2_LTR LTR ERVK -2 355 1 3 724 30 0 0 0 chr5 18322293 18322323 -134214936 + AT_rich Low_complexity Low_complexity 1 30 0 4 724 743 386 38 24 chr5 18322558 18323027 -134214232 + ORR1D1-int LTR MaLR 3 478 -1102 4 724 30 77 0 0 chr5 18323054 18323119 -134214140 + AT_rich Low_complexity Low_complexity 1 65 0 4 724 1261 234 83 18 chr5 18323125 18323512 -134213747 + RLTR20D LTR ERVK 5 465 -103 4 724 279 114 0 0 chr5 18323512 18323556 -134213703 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 724 712 260 101 19 chr5 18323556 18323642 -134213617 + RLTR20D LTR ERVK 466 567 -1 4 724 297 247 0 0 chr5 18323737 18323810 -134213449 - Lx9 LINE L1 -170 7474 7402 4 724 210 314 17 118 chr5 18323886 18324005 -134213254 - L2 LINE L2 -2838 581 475 4 724 386 242 161 42 chr5 18324081 18324249 -134213010 - MTD LTR MaLR -1 418 231 4 724 710 276 33 53 chr5 18324288 18324533 -134212726 - MTD LTR MaLR -133 286 47 4 724 667 278 65 103 chr5 18324608 18325053 -134212206 + ORR1D1-int LTR MaLR 1315 1546 -34 4 724 379 284 10 40 chr5 18326221 18326320 -134210939 + PB1D7 SINE Alu 20 115 -5 4 724 1780 165 24 85 chr5 18327403 18327780 -134209479 - ORR1B1 LTR MaLR 0 394 41 4 724 181 391 11 11 chr5 18328335 18328423 -134208836 - MIR SINE MIR -64 144 57 4 724 2052 61 18 0 chr5 18328887 18329167 -134208092 + RLTR10 LTR ERVK 1 285 -105 4 724 29057 7 1 0 chr5 18329194 18335034 -134202225 + L1Md_A LINE L1 1 5586 -297 4 724 9063 3 0 0 chr5 18335034 18336030 -134201229 + L1Md_A LINE L1 5587 6582 0 4 724 29 19 0 55 chr5 18336032 18336087 -134201172 + AT_rich Low_complexity Low_complexity 1 52 0 4 724 208 164 18 35 chr5 18336091 18336148 -134201111 + A-rich Low_complexity Low_complexity 4 59 0 4 724 380 40 0 0 chr5 18336148 18336198 -134201061 + RLTR10-int LTR ERVK 252 301 -1686 4 724 218 236 0 18 chr5 18336472 18336528 -134200731 + GA-rich Low_complexity Low_complexity 2 56 0 4 724 432 0 0 0 chr5 18337137 18337185 -134200074 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 724 215 243 28 14 chr5 18338070 18338141 -134199118 + T-rich Low_complexity Low_complexity 3 74 0 4 724 243 146 0 0 chr5 18338160 18338201 -134199058 + (CAT)n Simple_repeat Simple_repeat 1 41 0 4 724 410 271 21 0 chr5 18338205 18338301 -134198958 - U6 snRNA snRNA -1 106 9 4 724 3213 224 57 8 chr5 18338481 18339658 -134197601 + Lx5 LINE L1 5123 6363 -687 4 724 1314 285 86 9 chr5 18339679 18340195 -134197064 + Lx5 LINE L1 6503 7433 -27 4 724 1064 209 155 83 chr5 18340223 18340572 -134196687 - ORR1D1 LTR MaLR 0 374 1 4 724 282 29 0 0 chr5 18341421 18341456 -134195803 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 724 333 409 52 4 chr5 18341488 18341719 -134195540 - B4A SINE B4 -30 262 21 4 724 20934 74 7 11 chr5 18341915 18344925 -134192334 + L1_Mm LINE L1 2462 5459 -424 4 724 1495 169 31 15 chr5 18344923 18345248 -134192011 - L1_Mur2 LINE L1 -484 5393 5064 4 724 1704 184 30 15 chr5 18345244 18345641 -134191618 + Lx2B LINE L1 5793 6195 -805 4 724 2051 122 3 0 chr5 18345642 18345944 -134191315 + ORR1A2 LTR MaLR 25 327 0 4 724 483 211 0 24 chr5 18345944 18346070 -134191189 + Lx2B LINE L1 6878 7000 0 4 724 496 325 100 22 chr5 18346279 18346550 -134190709 + B4 SINE B4 1 292 0 4 90 13866 152 37 10 chr5 18348726 18351998 -134185261 - L1_Mus4 LINE L1 -4 6632 3269 4 725 677 83 0 2 chr5 18352247 18352356 -134184903 + MuRRS4-int LTR ERV1 139 293 -3006 4 725 847 126 68 19 chr5 18352703 18352865 -134184394 + RMER16-int LTR ERVK 141 310 -5096 4 725 378 0 0 0 chr5 18352868 18352910 -134184349 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 4 725 2593 122 38 7 chr5 18352910 18353331 -134183928 + RMER16-int LTR ERVK 702 1135 -4271 4 725 233 320 70 54 chr5 18353331 18353460 -134183799 + MTC-int LTR MaLR 842 972 -286 4 725 2117 200 109 8 chr5 18353472 18354005 -134183254 + MuRRS4-int LTR ERV1 760 1346 -3717 4 725 915 224 33 4 chr5 18354137 18354379 -134182880 + MuRRS4-int LTR ERV1 4788 5036 -27 4 725 1246 58 205 11 chr5 18354384 18354574 -134182685 + LTRIS2 LTR ERV1 3 229 -335 4 725 547 51 13 0 chr5 18354574 18354653 -134182606 + L1Md_T LINE L1 6503 6582 0 4 725 264 59 0 0 chr5 18354723 18354757 -134182502 + (A)n Simple_repeat Simple_repeat 1 34 0 4 725 207 0 0 0 chr5 18355020 18355043 -134182216 + (A)n Simple_repeat Simple_repeat 1 23 0 4 725 2352 50 73 33 chr5 18355043 18355372 -134181887 + LTRIS2 LTR ERV1 223 564 0 4 725 5404 51 0 1 chr5 18355923 18356590 -134180669 - L1Md_F2 LINE L1 -12 6570 5905 4 725 21 0 0 0 chr5 18356932 18356953 -134180306 + AT_rich Low_complexity Low_complexity 1 21 0 4 725 24 32 0 0 chr5 18356973 18357004 -134180255 + AT_rich Low_complexity Low_complexity 1 31 0 4 725 823 160 187 32 chr5 18357004 18357191 -134180068 - B3 SINE B2 0 216 1 4 725 33806 49 0 3 chr5 18358174 18363869 -134173390 + L1Md_T LINE L1 1 5589 -297 4 725 8478 31 1 0 chr5 18363870 18364864 -134172395 + L1Md_T LINE L1 5591 6585 0 4 725 23 0 0 0 chr5 18364914 18364937 -134172322 + AT_rich Low_complexity Low_complexity 1 23 0 4 725 639 0 0 0 chr5 18365547 18365618 -134171641 + (TC)n Simple_repeat Simple_repeat 1 71 0 4 725 269 278 58 67 chr5 18365716 18365820 -134171439 - ID_B1 SINE B4 -34 190 88 4 725 22 35 0 0 chr5 18366070 18366099 -134171160 + AT_rich Low_complexity Low_complexity 1 29 0 4 725 779 234 54 30 chr5 18366236 18366439 -134170820 - B3 SINE B2 -6 210 3 4 725 1233 110 11 0 chr5 18366456 18366638 -134170621 - B2_Mm2 SINE B2 -9 186 3 4 725 234 0 0 0 chr5 18366798 18366824 -134170435 + (T)n Simple_repeat Simple_repeat 1 26 0 4 725 7640 45 6 0 chr5 18366849 18368336 -134168923 - L1Md_F2 LINE L1 -13 6569 5074 4 725 2372 271 82 13 chr5 18368329 18368954 -134168305 - Lx9 LINE L1 -304 7340 6663 4 725 1643 171 84 0 chr5 18368954 18369253 -134168006 - ORR1A2 LTR MaLR 0 327 4 4 725 2372 271 82 13 chr5 18369253 18369383 -134167876 - Lx9 LINE L1 -982 6662 6533 4 725 936 169 185 0 chr5 18369376 18369625 -134167634 + Lx9 LINE L1 7347 7641 -3 4 725 423 0 0 0 chr5 18370190 18370237 -134167022 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4 725 1041 309 58 43 chr5 18370900 18371766 -134165493 + RMER1B Other Other 45 473 -593 4 725 1766 191 86 8 chr5 18372176 18372550 -134164709 + RMER1B Other Other 645 1047 -19 4 725 561 68 0 0 chr5 18372550 18372624 -134164635 + (TA)n Simple_repeat Simple_repeat 1 74 0 4 725 2583 189 14 0 chr5 18372627 18373123 -134164136 - Lx4A LINE L1 -587 6471 5969 4 725 3420 151 42 2 chr5 18373123 18373692 -134163567 + Lx4A LINE L1 6466 7057 -1 4 725 29 28 0 0 chr5 18373692 18373728 -134163531 + AT_rich Low_complexity Low_complexity 1 36 0 4 725 229 246 14 0 chr5 18373832 18373901 -134163358 - L1MC4a LINE L1 -91 7791 7722 4 725 5059 58 92 1 chr5 18373946 18374622 -134162637 - L1_Mus1 LINE L1 0 6567 5831 4 725 420 251 146 0 chr5 18374733 18374932 -134162327 - L1MA8 LINE L1 -173 6118 5891 4 725 297 301 52 63 chr5 18375006 18375291 -134161968 - MER90 LTR ERV1 -62 607 231 4 725 351 288 11 103 chr5 18376572 18376746 -134160513 - RLTR31_Mur LTR ERVK -5 548 391 4 725 3144 162 60 7 chr5 18376815 18377380 -134159879 + RLTR17 LTR ERVK 98 692 0 4 725 1120 198 140 54 chr5 18377380 18377720 -134159539 - RLTR31_Mur LTR ERVK -183 370 1 4 725 1249 218 47 10 chr5 18377722 18378301 -134158958 + ORR1C1 LTR MaLR 87 758 -612 4 725 438 152 0 37 chr5 18378306 18378388 -134158871 + ORR1C1 LTR MaLR 285 363 -15 4 725 3687 113 53 2 chr5 18378460 18379029 -134158230 - L1_Mus4 LINE L1 -2 6634 6037 4 725 2215 80 13 0 chr5 18379029 18379382 -134157877 + L1_Mus4 LINE L1 5642 6037 -599 4 725 253 288 204 17 chr5 18379654 18380060 -134157199 + L1M4 LINE L1 4179 4660 -1486 4 725 25 31 0 0 chr5 18380283 18380315 -134156944 + AT_rich Low_complexity Low_complexity 1 32 0 4 725 542 136 7 22 chr5 18380514 18380649 -134156610 + (TA)n Simple_repeat Simple_repeat 1 133 0 4 725 345 290 65 0 chr5 18381034 18381220 -134156039 + L1MA8 LINE L1 6052 6249 -42 4 725 30 0 0 0 chr5 18381229 18381259 -134156000 + AT_rich Low_complexity Low_complexity 1 30 0 4 725 1776 154 220 66 chr5 18381357 18381843 -134155416 + RLTR31_Mm LTR ERVK 1 561 0 4 725 331 312 94 6 chr5 18382281 18382452 -134154807 + Lx8 LINE L1 6232 6417 -1056 4 725 726 191 170 0 chr5 18382453 18382501 -134154758 + Lx7 LINE L1 5529 5586 -294 4 725 414 0 0 0 chr5 18382501 18382547 -134154712 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 725 726 191 170 0 chr5 18382547 18382692 -134154567 + Lx7 LINE L1 5587 5754 -126 4 725 807 220 75 33 chr5 18382874 18383114 -134154145 + RMER20B LTR ERVK 156 405 -222 4 725 1163 232 96 24 chr5 18383172 18383587 -134153672 + Lx7 LINE L1 5763 6207 -1489 4 725 9064 182 28 20 chr5 18383607 18385440 -134151819 - RLTR22_Mur LTR ERVK 0 1848 1 4 725 3769 250 93 62 chr5 18385442 18386838 -134150421 + Lx7 LINE L1 6258 7696 0 4 725 309 89 0 0 chr5 18387060 18387105 -134150154 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 725 443 17 0 33 chr5 18387181 18387242 -134150017 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 4 725 322 157 49 0 chr5 18387444 18387546 -134149713 + (TG)n Simple_repeat Simple_repeat 2 108 0 4 725 29 47 0 0 chr5 18388821 18388864 -134148395 + AT_rich Low_complexity Low_complexity 1 43 0 4 725 502 221 0 17 chr5 18389505 18389620 -134147639 + RLTR12B LTR ERVK 14 126 -442 4 725 2926 86 2 16 chr5 18389621 18390049 -134147210 - L1Md_F2 LINE L1 0 6582 6161 4 725 29932 85 19 1 chr5 18390049 18395129 -134142130 - L1Md_F LINE L1 -334 5549 379 4 725 1085 259 65 13 chr5 18395132 18395534 -134141725 + RLTR12B LTR ERVK 112 553 -15 4 725 241 143 42 28 chr5 18396005 18396077 -134141182 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 725 204 40 0 0 chr5 18396225 18396250 -134141009 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 725 438 263 134 15 chr5 18396250 18396451 -134140808 + Lx9 LINE L1 7419 7643 -1 4 725 395 339 55 31 chr5 18397340 18397468 -134139791 - ID_B1 SINE B4 -8 216 86 4 725 869 282 52 41 chr5 18397686 18398052 -134139207 - ORR1D2 LTR MaLR 0 370 1 4 725 22643 181 50 44 chr5 18398245 18399739 -134137520 + Lx4B LINE L1 509 2047 -3830 4 725 813 21 0 0 chr5 18399739 18399834 -134137425 + (CA)n Simple_repeat Simple_repeat 2 96 0 4 725 22643 157 42 51 chr5 18399834 18400672 -134136587 + Lx4B LINE L1 2048 2881 -2996 4 725 981 119 7 0 chr5 18400672 18400815 -134136444 + B1_Mus1 SINE Alu 5 148 0 4 725 311 65 0 21 chr5 18400823 18400870 -134136389 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 4 725 22643 157 42 51 chr5 18400870 18401101 -134136158 + Lx4B LINE L1 2891 3062 -2815 4 725 762 98 0 0 chr5 18401101 18401223 -134136036 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 4 725 22643 157 42 51 chr5 18401223 18401604 -134135655 + Lx4B LINE L1 3063 3476 -2401 4 725 225 0 0 0 chr5 18401604 18401629 -134135630 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 725 22643 157 42 51 chr5 18401629 18402061 -134135198 + Lx4B LINE L1 3477 3913 -1964 4 725 2445 170 36 83 chr5 18402061 18402650 -134134609 - RLTR31_Mm LTR ERVK 0 561 1 4 725 22643 166 82 36 chr5 18402650 18405477 -134131782 + Lx4B LINE L1 3914 7012 -46 4 725 26 0 0 0 chr5 18406940 18406966 -134130293 + AT_rich Low_complexity Low_complexity 1 26 0 4 725 3651 197 16 20 chr5 18407020 18407782 -134129477 - Lx2B LINE L1 -3 6997 6239 4 725 31 0 0 0 chr5 18408059 18408090 -134129169 + AT_rich Low_complexity Low_complexity 1 31 0 5 725 425 267 42 99 chr5 18409403 18409568 -134127691 - B3A SINE B2 -6 210 57 5 725 353 287 116 42 chr5 18409568 18409757 -134127502 + B3 SINE B2 3 205 -11 5 725 1710 189 120 3 chr5 18410479 18410871 -134126388 - BGLII_B LTR ERVK -3 438 1 5 725 1043 103 0 0 chr5 18410971 18411116 -134126143 + B1_Mus2 SINE Alu 3 147 0 5 725 180 0 0 0 chr5 18411210 18411230 -134126029 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 725 417 95 0 0 chr5 18411261 18411324 -134125935 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 725 572 295 93 16 chr5 18411324 18411573 -134125686 - B4 SINE B4 -20 272 3 5 725 1445 238 37 77 chr5 18411757 18412212 -134125047 - Lx5 LINE L1 0 7050 6614 5 725 2679 205 62 8 chr5 18412211 18412796 -134124463 + Lx5 LINE L1 5919 6534 -516 5 725 351 349 138 31 chr5 18412798 18413058 -134124201 + MLT1A0 LTR MaLR 77 364 -1 5 725 2153 42 4 0 chr5 18413244 18413509 -134123750 + L1Md_F3 LINE L1 6255 6520 -64 5 725 203 67 98 16 chr5 18413572 18413633 -134123626 + T-rich Low_complexity Low_complexity 1 66 0 5 725 1083 88 0 0 chr5 18413633 18413780 -134123479 - B1_Mus1 SINE Alu 0 148 2 5 725 28 0 0 0 chr5 18414074 18414102 -134123157 + AT_rich Low_complexity Low_complexity 1 28 0 5 725 289 297 0 15 chr5 18415439 18415504 -134121755 - PB1D10 SINE Alu -23 94 31 5 725 21 0 0 0 chr5 18415712 18415733 -134121526 + AT_rich Low_complexity Low_complexity 1 21 0 5 725 303 28 0 0 chr5 18415780 18415816 -134121443 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 725 615 117 0 0 chr5 18415818 18415912 -134121347 + (GAAA)n Simple_repeat Simple_repeat 1 94 0 5 725 1594 294 128 11 chr5 18416401 18417017 -134120242 + Lx8 LINE L1 6301 6988 -485 5 725 4612 116 14 11 chr5 18417017 18417730 -134119529 - RLTR13D5 LTR ERVK 0 1023 309 5 725 207 365 18 46 chr5 18417761 18417870 -134119389 - L2b LINE L2 -25 3350 3245 5 725 36 77 0 0 chr5 18418380 18418458 -134118801 + AT_rich Low_complexity Low_complexity 1 78 0 5 725 236 287 67 22 chr5 18418600 18418689 -134118570 - MER58A DNA MER1_type -66 158 66 5 725 276 279 36 7 chr5 18419465 18419602 -134117657 + L1MA5 LINE L1 6160 6300 0 5 725 459 0 0 0 chr5 18421305 18421356 -134115903 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 725 216 143 0 0 chr5 18423291 18423333 -134113926 + (A)n Simple_repeat Simple_repeat 1 42 0 5 725 21 57 0 0 chr5 18423510 18423545 -134113714 + AT_rich Low_complexity Low_complexity 1 35 0 5 725 1158 330 49 11 chr5 18424042 18424511 -134112748 + MER82 DNA MER2_type 3 489 -164 5 725 816 327 82 26 chr5 18425881 18426308 -134110951 - MLT2B2 LTR ERVL -59 456 6 5 725 662 258 93 44 chr5 18426471 18426847 -134110412 - RLTR11B LTR ERVK -27 414 1 5 725 25 75 0 0 chr5 18426979 18427032 -134110227 + AT_rich Low_complexity Low_complexity 1 53 0 5 725 717 195 16 0 chr5 18427156 18427284 -134109975 - B1_Mus1 SINE Alu -5 143 14 5 725 30 0 0 0 chr5 18428547 18428577 -134108682 + AT_rich Low_complexity Low_complexity 1 30 0 5 725 246 282 14 0 chr5 18428923 18428994 -134108265 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 725 216 0 0 0 chr5 18429838 18429862 -134107397 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5 725 911 62 44 44 chr5 18429862 18429998 -134107261 - B1_Mus1 SINE Alu -11 137 2 5 725 21 0 0 0 chr5 18431605 18431626 -134105633 + AT_rich Low_complexity Low_complexity 1 21 0 5 725 3477 272 47 76 chr5 18431662 18433406 -134103853 - Lx7 LINE L1 0 7460 5781 5 725 1092 69 14 0 chr5 18433411 18433556 -134103703 - B1_Mus2 SINE Alu 0 147 1 5 725 2150 47 18 0 chr5 18433573 18433849 -134103410 - L1Md_F3 LINE L1 -14 6570 6290 5 725 885 19 0 19 chr5 18433849 18433955 -134103304 + L1Md_F3 LINE L1 5617 5720 -864 5 725 3645 20 123 0 chr5 18433955 18434394 -134102865 + MT2_Mm LTR ERVL 1 493 0 5 725 48021 15 0 0 chr5 18434394 18439765 -134097494 + MERVL-int LTR ERVL 1 5371 -114 5 725 350 139 26 53 chr5 18439765 18439841 -134097418 + ORR1A3-int LTR MaLR 567 640 -1323 5 725 292 26 0 0 chr5 18439841 18439879 -134097380 + MERVL-int LTR ERVL 5448 5485 0 5 725 3619 23 123 0 chr5 18439879 18440318 -134096941 + MT2_Mm LTR ERVL 1 493 0 5 725 4576 29 15 0 chr5 18440318 18440862 -134096397 + L1Md_F3 LINE L1 5716 6267 -317 5 725 5079 218 41 65 chr5 18440859 18441265 -134095994 - Lx7 LINE L1 -86 5794 5404 5 725 6427 140 26 46 chr5 18441265 18442426 -134094833 - Lx2 LINE L1 -4 6993 5856 5 725 5079 218 41 65 chr5 18442426 18443247 -134094012 - Lx7 LINE L1 -477 5403 4615 5 725 360 0 0 0 chr5 18443247 18443287 -134093972 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 725 5079 218 41 65 chr5 18443287 18443557 -134093702 - Lx7 LINE L1 -1266 4614 4332 5 725 324 70 0 0 chr5 18443557 18443600 -134093659 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 725 3404 112 33 0 chr5 18443605 18444124 -134093135 - L1_Mus4 LINE L1 -11 6625 6090 5 725 195 129 0 0 chr5 18444131 18444162 -134093097 + (TCTCCC)n Simple_repeat Simple_repeat 4 34 0 5 725 2561 196 57 13 chr5 18444240 18444904 -134092355 - L1_Mur3 LINE L1 -1009 2905 2175 5 725 4515 230 78 11 chr5 18444884 18446628 -134090631 - L1_Mur3 LINE L1 -3969 1911 57 5 725 774 288 97 4 chr5 18446795 18447053 -134090206 - Lx8 LINE L1 -488 6985 6704 5 725 213 65 0 0 chr5 18447673 18447704 -134089555 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 725 1049 88 0 0 chr5 18447704 18447840 -134089419 - B1_Mus2 SINE Alu -11 136 1 5 725 1855 205 40 33 chr5 18447850 18448279 -134088980 + RMER10A LTR ERVL 1 432 -10 5 725 270 263 20 31 chr5 18448698 18448796 -134088463 - Lx9 LINE L1 -669 6975 6879 5 725 204 241 17 0 chr5 18448990 18449048 -134088211 + A-rich Low_complexity Low_complexity 3 61 0 5 725 222 37 0 0 chr5 18449099 18449126 -134088133 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 725 377 70 18 0 chr5 18449152 18449209 -134088050 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 725 675 346 79 22 chr5 18449209 18449680 -134087579 - MER54B LTR ERVL -29 764 224 5 725 1086 289 32 64 chr5 18449686 18450082 -134087177 - MTEa LTR MaLR 0 379 1 5 725 998 258 102 31 chr5 18450810 18451162 -134086097 - MTEa LTR MaLR 0 379 3 5 725 434 336 52 62 chr5 18454981 18455286 -134081973 + MLT1D LTR MaLR 45 346 -159 5 725 224 136 16 63 chr5 18456507 18456570 -134080689 + T-rich Low_complexity Low_complexity 3 62 0 5 725 4606 39 4 0 chr5 18457023 18457585 -134079674 + L1Md_T LINE L1 6017 6580 -2 5 725 627 237 128 28 chr5 18457642 18457924 -134079335 + L1MC3 LINE L1 5291 5600 -2185 5 725 306 315 105 47 chr5 18458685 18458875 -134078384 + L1MC3 LINE L1 6147 6347 -1438 5 725 396 0 0 0 chr5 18460559 18460603 -134076656 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 725 329 292 0 103 chr5 18460614 18460721 -134076538 - B1F SINE Alu -38 111 16 5 725 23 33 0 0 chr5 18460810 18460840 -134076419 + AT_rich Low_complexity Low_complexity 1 30 0 5 725 24 32 0 0 chr5 18461084 18461115 -134076144 + AT_rich Low_complexity Low_complexity 1 31 0 5 725 312 27 0 0 chr5 18461388 18461425 -134075834 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 5 725 250 259 41 74 chr5 18461425 18461546 -134075713 - RMER1C Other Other -117 1225 1109 5 725 3987 289 84 16 chr5 18461473 18463109 -134074150 - Lx7 LINE L1 -396 7300 5556 5 725 719 215 6 18 chr5 18463110 18463276 -134073983 + L1_Mur3 LINE L1 4899 5062 -818 5 725 301 302 12 30 chr5 18463768 18463935 -134073324 + CT-rich Low_complexity Low_complexity 1 164 0 5 725 181 57 57 0 chr5 18464756 18464791 -134072468 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 725 21 71 0 0 chr5 18465160 18465202 -134072057 + AT_rich Low_complexity Low_complexity 1 42 0 5 725 375 23 0 0 chr5 18465388 18465432 -134071827 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 725 228 306 91 29 chr5 18465638 18465813 -134071446 - MER3 DNA MER1_type -18 191 6 5 725 698 232 0 14 chr5 18466135 18466478 -134070781 + GA-rich Low_complexity Low_complexity 1 338 0 5 725 520 68 0 0 chr5 18466618 18466691 -134070568 - B1_Mm SINE Alu 0 147 75 5 725 245 299 22 44 chr5 18466695 18466786 -134070473 - MLT1A1 LTR MaLR -15 393 305 5 725 29 60 0 0 chr5 18466979 18467029 -134070230 + AT_rich Low_complexity Low_complexity 1 50 0 5 725 48 96 0 0 chr5 18467585 18467731 -134069528 + AT_rich Low_complexity Low_complexity 1 146 0 5 725 372 261 98 26 chr5 18469435 18469628 -134067631 + MT2A LTR ERVL 323 529 -4 5 725 230 260 0 25 chr5 18470560 18470639 -134066620 + (CAGAGA)n Simple_repeat Simple_repeat 5 81 0 5 725 1193 225 55 110 chr5 18471025 18471425 -134065834 - ORR1C1 LTR MaLR 0 378 1 5 725 198 0 0 0 chr5 18471562 18471584 -134065675 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 5 725 427 130 0 13 chr5 18472038 18472116 -134065143 - Lx LINE L1 -13 6641 6565 5 725 2695 67 19 16 chr5 18472378 18472742 -134064517 + RLTR10B2 LTR ERVK 1 365 0 5 725 4774 126 46 56 chr5 18475408 18476840 -134060419 + L1VL4 LINE L1 410 1736 -1879 5 725 431 214 12 0 chr5 18477284 18477368 -134059891 + B1_Mus1 SINE Alu 2 86 -62 5 725 182 372 16 74 chr5 18478417 18478539 -134058720 + L2a LINE L2 3310 3424 -2 5 725 3259 18 39 0 chr5 18478887 18479268 -134057991 - MTA_Mm LTR MaLR 0 396 1 5 725 9136 31 3 2 chr5 18479270 18480365 -134056894 - MTA_Mm-int LTR MaLR -2 1096 1 5 725 3259 18 39 0 chr5 18480365 18480746 -134056513 - MTA_Mm LTR MaLR 0 396 1 5 725 424 321 52 0 chr5 18480823 18480957 -134056302 + RSINE1 SINE B4 13 153 -12 5 726 182 222 32 0 chr5 18481188 18481251 -134056008 + (CATA)n Simple_repeat Simple_repeat 3 67 0 5 726 24 0 0 0 chr5 18481662 18481686 -134055573 + AT_rich Low_complexity Low_complexity 1 24 0 5 726 1097 201 27 18 chr5 18481697 18481920 -134055339 - URR1B DNA MER1_type 0 225 1 5 726 222 37 0 0 chr5 18481946 18481973 -134055286 + (A)n Simple_repeat Simple_repeat 1 27 0 5 726 7445 153 50 67 chr5 18482065 18484283 -134052976 + L1_Mur2 LINE L1 584 2765 -3112 5 726 1235 254 10 17 chr5 18484301 18484593 -134052666 + Lx4B LINE L1 6769 7058 0 5 726 198 0 0 0 chr5 18484613 18484635 -134052624 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 726 1315 324 80 20 chr5 18484635 18484958 -134052301 + Lx8 LINE L1 6615 6938 -535 6 726 243 61 0 0 chr5 18484958 18484991 -134052268 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 726 1315 324 80 20 chr5 18484991 18485257 -134052002 + Lx8 LINE L1 6939 7238 -235 6 726 610 246 120 55 chr5 18485307 18485582 -134051677 + RLTR15 LTR ERVK 1 293 -66 6 726 4808 76 5 3 chr5 18486161 18486808 -134050451 - L1_Mus2 LINE L1 -2 6564 5917 6 726 37868 31 1 0 chr5 18486814 18493099 -134044160 - L1Md_T LINE L1 0 6585 199 6 726 1407 66 0 0 chr5 18493100 18493283 -134043976 - L1_Mus2 LINE L1 -634 5932 5750 6 726 5754 62 16 0 chr5 18493282 18494041 -134043218 + L1_Mm LINE L1 3944 4714 -1169 6 726 477 255 101 33 chr5 18494378 18494596 -134042663 + L1MA5 LINE L1 5605 5858 -442 6 726 21 0 0 0 chr5 18495457 18495478 -134041781 + AT_rich Low_complexity Low_complexity 1 21 0 6 726 229 291 46 46 chr5 18495550 18495658 -134041601 + RMER12 LTR ERVK 744 851 -471 6 726 3005 237 49 14 chr5 18495670 18496449 -134040810 - Lx9 LINE L1 -251 7393 6588 6 726 190 232 107 0 chr5 18496544 18496600 -134040659 - L3 LINE CR1 -3472 1017 956 6 726 205 266 0 0 chr5 18496615 18496679 -134040580 + A-rich Low_complexity Low_complexity 1 64 0 6 726 420 20 0 0 chr5 18497468 18497517 -134039742 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 726 8813 142 17 10 chr5 18497657 18499683 -134037576 - Lx2 LINE L1 0 6997 4956 6 726 28 29 0 0 chr5 18499960 18499995 -134037264 + AT_rich Low_complexity Low_complexity 1 35 0 6 726 1664 316 37 31 chr5 18500001 18500575 -134036684 - Lx5 LINE L1 -19 7031 6455 1 726 496 168 0 0 chr5 18500573 18500664 -134036595 - Lx6 LINE L1 -1792 5668 5575 2 726 1438 286 75 12 chr5 18500724 18501205 -134036054 - Lx5 LINE L1 -620 6430 5920 1 726 2799 93 83 2 chr5 18501227 18501659 -134035600 + RLTR44C LTR ERVK 11 477 -25 3 726 1628 255 29 53 chr5 18501685 18502173 -134035086 - Lx5 LINE L1 -11 5869 5394 1 726 32925 93 6 11 chr5 18502180 18508392 -134028867 - L1Md_F2 LINE L1 -14 6568 406 4 726 699 188 0 0 chr5 18508389 18508517 -134028742 - Lx5 LINE L1 -470 5407 5280 1 726 2094 216 75 14 chr5 18508509 18508631 -134028628 - RMER1B Other Other -4 1062 920 5 726 216 97 0 0 chr5 18508631 18508662 -134028597 + (CAA)n Simple_repeat Simple_repeat 2 32 0 6 726 2094 216 75 14 chr5 18508662 18509045 -134028214 - RMER1B Other Other -147 919 527 5 726 212 135 0 51 chr5 18509725 18509764 -134027495 + (TATG)n Simple_repeat Simple_repeat 2 38 0 7 726 189 0 0 0 chr5 18509808 18509829 -134027430 + (T)n Simple_repeat Simple_repeat 1 21 0 8 726 400 118 0 41 chr5 18510079 18510176 -134027083 + (TCTCTG)n Simple_repeat Simple_repeat 2 94 0 9 726 793 219 0 0 chr5 18510335 18510490 -134026769 + Lx7 LINE L1 6917 7071 -625 1 726 192 77 0 0 chr5 18510911 18510937 -134026322 + (TA)n Simple_repeat Simple_repeat 1 26 0 1 726 285 29 0 0 chr5 18511034 18511068 -134026191 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1 726 333 0 0 0 chr5 18511093 18511130 -134026129 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 726 381 346 133 15 chr5 18511139 18511403 -134025856 + Lx8 LINE L1 6305 6599 -874 1 726 25 31 0 0 chr5 18511505 18511537 -134025722 + AT_rich Low_complexity Low_complexity 1 32 0 1 726 419 233 17 0 chr5 18512047 18512163 -134025096 - Lx9 LINE L1 -9 7635 7518 1 726 670 264 18 28 chr5 18513455 18513673 -134023586 + B3 SINE B2 1 216 0 1 726 4906 144 23 17 chr5 18513682 18514521 -134022738 + Lx3C LINE L1 6133 6976 0 1 726 391 300 27 0 chr5 18515868 18515978 -134021281 - Lx9 LINE L1 -460 7184 7072 1 726 8797 129 12 5 chr5 18516161 18518136 -134019123 + L1_Mus1 LINE L1 542 2576 -3310 1 726 9773 95 9 6 chr5 18518121 18520280 -134016979 + L1_Mus1 LINE L1 4402 6570 0 1 726 240 184 0 0 chr5 18520326 18520375 -134016884 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 2 726 432 0 0 0 chr5 18520375 18520423 -134016836 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 726 261 128 0 0 chr5 18521202 18521249 -134016010 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 726 1684 185 24 112 chr5 18521594 18522003 -134015256 + ORR1B1 LTR MaLR 1 373 -21 2 726 5927 48 1 0 chr5 18522182 18522914 -134014345 + L1Md_T LINE L1 5850 6582 0 2 726 632 289 55 6 chr5 18523651 18523832 -134013427 + B3A SINE B2 9 198 0 2 726 369 0 0 0 chr5 18524533 18524574 -134012685 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 726 216 0 0 0 chr5 18526885 18526909 -134010350 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 726 25 0 0 0 chr5 18527054 18527079 -134010180 + AT_rich Low_complexity Low_complexity 1 25 0 2 726 921 149 5 11 chr5 18527079 18527269 -134009990 - Lx3A LINE L1 -3 6978 6790 2 726 234 0 0 0 chr5 18528033 18528059 -134009200 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 726 3975 115 12 8 chr5 18528401 18528989 -134008270 - Lx3A LINE L1 -160 6821 6232 2 726 736 219 0 12 chr5 18528990 18529152 -134008107 + Lx3A LINE L1 6817 6976 -5 3 726 764 79 0 9 chr5 18529407 18529522 -134007737 - Lx LINE L1 0 6654 6541 3 726 22 35 0 0 chr5 18529607 18529636 -134007623 + AT_rich Low_complexity Low_complexity 1 29 0 3 726 663 137 150 7 chr5 18530677 18530817 -134006442 + Lx3C LINE L1 6813 6972 -4 3 726 29 60 0 0 chr5 18531013 18531063 -134006196 + AT_rich Low_complexity Low_complexity 1 50 0 3 726 189 0 0 0 chr5 18531140 18531161 -134006098 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 726 215 31 31 0 chr5 18532195 18532227 -134005032 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 726 238 193 0 0 chr5 18532541 18532598 -134004661 + T-rich Low_complexity Low_complexity 1 57 0 3 726 453 81 0 0 chr5 18532872 18532934 -134004325 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 726 403 158 109 0 chr5 18533141 18533242 -134004017 + Lx5 LINE L1 6939 7050 0 4 726 375 313 91 32 chr5 18534783 18535004 -134002255 - Tigger7 DNA MER2_type -45 2446 2213 4 726 232 294 41 61 chr5 18535028 18535126 -134002133 - Tigger7 DNA MER2_type -240 2251 2156 4 726 490 29 14 14 chr5 18535267 18535336 -134001923 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 726 513 0 0 0 chr5 18535336 18535392 -134001867 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 726 369 0 0 0 chr5 18535747 18535788 -134001471 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 726 297 0 0 0 chr5 18535788 18535820 -134001439 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 726 1769 238 34 32 chr5 18536152 18536594 -134000665 - Lx5 LINE L1 -3 7047 6605 4 726 2417 284 69 62 chr5 18536593 18536836 -134000423 + L1_Mus3 LINE L1 5776 6012 -988 4 726 2225 43 3 24 chr5 18536836 18537124 -134000135 - L1_Mus1 LINE L1 -1 6566 6285 4 726 6974 94 8 6 chr5 18537124 18538101 -133999158 + L1_Mus3 LINE L1 5659 6637 -1 4 726 2355 198 33 33 chr5 18538125 18538674 -133998585 + Lx5 LINE L1 6061 6609 -441 4 726 591 120 0 0 chr5 18539179 18539287 -133997972 + (CA)n Simple_repeat Simple_repeat 2 109 0 5 726 392 348 86 79 chr5 18539293 18539699 -133997560 + Zaphod DNA Tip100 90 498 -3533 5 726 369 145 0 0 chr5 18539997 18540059 -133997200 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 726 276 57 0 0 chr5 18540059 18540094 -133997165 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 726 25 51 0 0 chr5 18540170 18540209 -133997050 + AT_rich Low_complexity Low_complexity 1 39 0 5 726 318 346 141 24 chr5 18541355 18541662 -133995597 - MLT1F LTR MaLR -84 485 114 5 726 22 35 0 0 chr5 18542127 18542156 -133995103 + AT_rich Low_complexity Low_complexity 1 29 0 5 726 10574 228 91 81 chr5 18542176 18545136 -133992123 - Lx7 LINE L1 -3 7457 4637 5 726 255 61 0 0 chr5 18545136 18545169 -133992090 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 5 726 10574 191 67 122 chr5 18545169 18545287 -133991972 - Lx7 LINE L1 -1244 4636 4523 5 726 3387 38 0 0 chr5 18545287 18545683 -133991576 + MTA_Mm LTR MaLR 1 396 0 5 726 7318 84 27 71 chr5 18545683 18546829 -133990430 + MTA_Mm-int LTR MaLR 1 1096 -2 5 726 3248 51 2 0 chr5 18546831 18547226 -133990033 + MTA_Mm LTR MaLR 1 396 0 5 726 10574 191 67 122 chr5 18547226 18549198 -133988061 - Lx7 LINE L1 -1358 4522 2460 5 726 720 206 82 17 chr5 18549169 18549483 -133987776 - Lx7 LINE L1 -4430 1450 1124 5 726 804 168 102 23 chr5 18549530 18549707 -133987552 + RMER6C LTR ERVK 1 191 -499 6 726 348 24 0 0 chr5 18549740 18549781 -133987478 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 726 351 0 0 0 chr5 18549781 18549819 -133987440 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 726 2820 255 66 0 chr5 18549824 18549889 -133987370 - Lx7 LINE L1 -6635 1093 1024 5 726 234 0 0 0 chr5 18549889 18549915 -133987344 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 726 2820 255 66 0 chr5 18549915 18550603 -133986656 - Lx7 LINE L1 -6705 1023 291 5 726 642 158 17 0 chr5 18550744 18550864 -133986395 + Lx2A1 LINE L1 6878 6999 -9 6 726 5885 129 6 12 chr5 18550879 18551822 -133985437 + Lx3A LINE L1 6042 6979 -2 6 726 1248 276 163 34 chr5 18551915 18552387 -133984872 - RMER15 LTR ERVL -14 561 29 6 726 489 282 150 34 chr5 18552475 18552975 -133984284 + L1MD LINE L1 3669 4226 -1920 6 726 295 220 0 0 chr5 18552993 18553052 -133984207 + L1MD1 LINE L1 6074 6132 -110 6 726 1412 48 21 11 chr5 18553392 18553583 -133983676 + L1Md_F3 LINE L1 6391 6583 -1 6 726 230 95 0 23 chr5 18553651 18553694 -133983565 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 7 726 23 68 0 0 chr5 18553820 18553864 -133983395 + AT_rich Low_complexity Low_complexity 1 44 0 7 726 183 129 0 0 chr5 18554192 18554223 -133983036 + (AGGGGG)n Simple_repeat Simple_repeat 6 36 0 7 726 229 111 0 0 chr5 18554338 18554374 -133982885 + L1MC2 LINE L1 6275 6310 -34 7 726 466 303 24 93 chr5 18554714 18554937 -133982322 - B3A SINE B2 -4 212 1 7 726 469 298 42 23 chr5 18555167 18555342 -133981917 + L1MA4 LINE L1 4491 4660 -1483 7 726 423 0 0 0 chr5 18555342 18555389 -133981870 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 726 469 314 56 65 chr5 18555389 18555673 -133981586 + L1MA4 LINE L1 4661 4944 -1199 7 726 225 0 0 0 chr5 18555681 18555706 -133981553 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 726 5753 186 36 46 chr5 18555710 18555905 -133981354 - RMER12B LTR ERVK -154 1250 1053 7 726 200 0 23 70 chr5 18555905 18555948 -133981311 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 7 726 5753 186 36 46 chr5 18555948 18557015 -133980244 - RMER12B LTR ERVK -352 1052 3 7 726 3040 99 9 0 chr5 18557066 18557500 -133979759 - L1_Mus3 LINE L1 -2 6636 6199 8 726 1822 95 0 0 chr5 18557501 18557753 -133979506 + L1_Mm LINE L1 4794 5045 -838 8 726 460 334 52 52 chr5 18558083 18558100 -133979159 + L1MA4 LINE L1 5477 5493 -804 7 726 207 0 0 0 chr5 18558100 18558123 -133979136 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8 726 481 334 52 52 chr5 18558123 18558411 -133978848 + L1MA4 LINE L1 5494 5790 -510 7 726 2507 122 23 5 chr5 18558411 18558807 -133978452 + RLTR9D LTR ERVK 1 403 0 8 726 481 341 24 55 chr5 18558807 18558890 -133978369 + L1MA4 LINE L1 5791 5866 -434 7 726 10694 142 26 8 chr5 18558918 18561669 -133975590 + L1Md_F LINE L1 98 2820 -3063 8 726 2906 67 3 3 chr5 18561669 18562045 -133975214 + L1_Mus1 LINE L1 6190 6565 -2 8 726 21 0 0 0 chr5 18562774 18562795 -133974464 + AT_rich Low_complexity Low_complexity 1 21 0 8 726 33551 70 1 16 chr5 18563121 18568263 -133968996 + L1Md_F2 LINE L1 529 5586 -297 8 726 7356 47 55 3 chr5 18568263 18569209 -133968050 + L1Md_F2 LINE L1 5587 6581 -1 8 726 586 301 93 38 chr5 18571045 18571412 -133965847 + Lx8 LINE L1 6814 7200 -273 8 726 626 287 82 18 chr5 18572189 18572590 -133964669 - L1M2 LINE L1 -2814 3329 2903 8 726 1114 330 19 3 chr5 18572952 18573262 -133963997 - MTE2b LTR MaLR -64 315 1 9 726 998 321 42 20 chr5 18573567 18573934 -133963325 + MTE2b LTR MaLR 3 379 0 9 726 460 325 19 6 chr5 18573935 18574093 -133963166 + MTE2b-int LTR MaLR 2 161 -1419 9 726 2907 179 108 10 chr5 18574097 18574718 -133962541 + RMER6C LTR ERVK 6 687 -3 9 726 1015 265 23 40 chr5 18574793 18575175 -133962084 + RMER10B LTR ERVL 1 394 -48 9 726 758 188 111 42 chr5 18575165 18575354 -133961905 + RMER10B LTR ERVL 197 398 0 9 726 206 197 32 32 chr5 18575354 18575417 -133961842 + A-rich Low_complexity Low_complexity 3 65 0 9 726 930 179 16 16 chr5 18575417 18575604 -133961655 - Lx4B LINE L1 -356 6702 6516 9 726 1303 225 52 16 chr5 18575602 18575909 -133961350 + Lx4B LINE L1 6740 7057 -1 9 726 871 140 6 6 chr5 18575923 18576081 -133961178 + GA-rich Low_complexity Low_complexity 2 159 0 9 726 530 319 6 24 chr5 18576081 18576232 -133961027 + MTE2b-int LTR MaLR 187 333 -1247 9 726 6158 42 12 0 chr5 18576232 18576992 -133960267 + L1Md_F3 LINE L1 5816 6584 0 9 726 530 319 6 24 chr5 18576992 18577010 -133960249 + MTE2b-int LTR MaLR 334 352 -1228 9 726 1549 253 10 13 chr5 18577019 18577403 -133959856 + Lx2B LINE L1 6611 6993 -7 9 726 218 184 0 0 chr5 18577459 18577497 -133959762 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 726 781 341 59 38 chr5 18577763 18578186 -133959073 + MTE2b-int LTR MaLR 293 724 -856 9 726 450 0 0 0 chr5 18578191 18578241 -133959018 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 726 463 292 76 33 chr5 18578247 18578431 -133958828 + MTE2b-int LTR MaLR 790 981 -599 9 726 3147 213 65 21 chr5 18578986 18579940 -133957319 + L1_Mur3 LINE L1 430 1432 -4448 1 726 428 265 17 45 chr5 18579995 18580173 -133957086 + L1Md_F LINE L1 571 743 -5776 1 726 250 97 0 0 chr5 18580286 18580317 -133956942 - MusHAL1 LINE L1 -1125 1587 1557 1 726 7492 48 5 0 chr5 18580317 18581249 -133956010 + L1Md_F2 LINE L1 5646 6582 0 1 726 1828 283 74 34 chr5 18581272 18582253 -133955006 + Lx5 LINE L1 6184 7366 -94 1 726 687 0 58 0 chr5 18583355 18583458 -133953801 + (GA)n Simple_repeat Simple_repeat 2 110 0 1 726 309 373 73 0 chr5 18583463 18583613 -133953646 + HAL1-3A_ME LINE L1 2284 2444 -414 1 726 1088 59 0 0 chr5 18584653 18584789 -133952470 - B1_Mus2 SINE Alu -10 137 2 1 726 212 244 0 0 chr5 18584916 18584961 -133952298 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 726 302 358 56 49 chr5 18584977 18585121 -133952138 + RSINE1 SINE B4 4 148 -17 1 726 723 317 62 15 chr5 18585635 18585907 -133951352 - B4A SINE B4 -2 290 6 1 726 26 0 0 0 chr5 18586913 18586939 -133950320 + AT_rich Low_complexity Low_complexity 1 26 0 1 726 438 327 123 35 chr5 18587115 18587375 -133949884 + B4A SINE B4 2 284 -8 1 726 421 279 65 53 chr5 18587522 18587730 -133949529 - Lx7 LINE L1 -1216 5834 5617 1 726 1056 170 48 0 chr5 18587729 18587958 -133949301 - L1_Mur3 LINE L1 -4232 1648 1409 1 726 15848 110 21 38 chr5 18587938 18591408 -133945851 - L1_Mus2 LINE L1 -1 6565 1286 1 726 406 202 111 0 chr5 18591381 18591480 -133945779 - Lx5 LINE L1 -486 6564 6455 1 726 272 219 12 0 chr5 18591517 18591599 -133945660 + T-rich Low_complexity Low_complexity 4 86 0 1 726 2062 272 54 25 chr5 18591623 18592445 -133944814 - Lx5 LINE L1 -705 6755 5693 1 726 1094 191 0 0 chr5 18592447 18592636 -133944623 - Lx5 LINE L1 -381 5496 5308 1 726 507 236 32 0 chr5 18592621 18592744 -133944515 - Lx5 LINE L1 -3073 2807 2681 1 726 489 211 0 0 chr5 18592934 18593057 -133944202 + (CA)n Simple_repeat Simple_repeat 2 124 0 1 726 289 324 10 0 chr5 18593148 18593250 -133944009 + Lx9 LINE L1 6904 7006 -638 1 726 1735 207 32 9 chr5 18593508 18593854 -133943405 - ORR1B1 LTR MaLR 0 394 41 1 726 588 308 103 31 chr5 18593943 18594516 -133942743 - L1_Mur3 LINE L1 -11 5836 5223 1 726 1270 303 34 57 chr5 18594586 18595591 -133941668 + L1M2 LINE L1 4235 5216 -927 1 726 579 233 77 10 chr5 18595870 18596038 -133941221 - ORR1B1-int LTR MaLR -29 1551 1216 1 726 553 401 49 21 chr5 18596083 18596412 -133940847 - ORR1B1-int LTR MaLR -577 1003 666 1 726 300 137 0 0 chr5 18597042 18597093 -133940166 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 726 1299 283 95 31 chr5 18597506 18597995 -133939264 - Lx6 LINE L1 -26 7434 6557 1 726 1255 195 39 42 chr5 18597989 18598348 -133938911 - Lx6 LINE L1 -1356 6104 5747 1 726 678 226 43 27 chr5 18598347 18598533 -133938726 + L1_Mur2 LINE L1 2627 2815 -3062 1 726 582 239 0 0 chr5 18598541 18598679 -133938580 + L1_Mur2 LINE L1 3014 3151 -2735 1 726 276 353 56 56 chr5 18598981 18599176 -133938083 + MTD LTR MaLR 20 214 -205 1 726 1008 115 0 7 chr5 18599245 18599394 -133937865 + B1_Mus1 SINE Alu 1 148 0 1 726 23 54 0 0 chr5 18599579 18599616 -133937643 + AT_rich Low_complexity Low_complexity 1 37 0 1 726 386 302 86 13 chr5 18599965 18600116 -133937143 - MLT1D LTR MaLR -341 164 3 1 726 246 239 132 33 chr5 18600150 18600241 -133937018 + MLT1A1 LTR MaLR 46 145 -263 1 726 496 0 31 0 chr5 18600380 18600444 -133936815 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 1 726 3236 206 85 5 chr5 18600583 18601328 -133935931 + Lx9 LINE L1 6839 7642 -2 1 726 595 303 15 69 chr5 18601776 18601978 -133935281 + B3 SINE B2 26 216 0 1 726 245 267 0 0 chr5 18602074 18602111 -133935148 - RSINE1 SINE B4 -20 145 109 1 726 3081 184 116 9 chr5 18602111 18602423 -133934836 + RMER6D LTR ERVK 1 372 -348 1 726 557 101 22 0 chr5 18602423 18602512 -133934747 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 1 726 2279 76 6 6 chr5 18602512 18602831 -133934428 - L1_Mus3 LINE L1 -11 6627 6309 1 726 3081 184 116 9 chr5 18602831 18603163 -133934096 + RMER6D LTR ERVK 373 714 -6 1 726 299 273 22 11 chr5 18603179 18603268 -133933991 + 4.5SRNA scRNA scRNA 1 90 -4 1 726 546 139 156 9 chr5 18603281 18603390 -133933869 + RMER6C LTR ERVK 566 690 0 1 726 4174 171 89 30 chr5 18603390 18604909 -133932350 + RMER6-int LTR ERVK 1 1607 -1570 1 726 1577 196 45 98 chr5 18604944 18605454 -133931805 + RMER6C LTR ERVK 208 690 0 1 726 7857 42 1 2 chr5 18605803 18606759 -133930500 + L1Md_F2 LINE L1 5616 6570 -12 1 726 679 58 2 0 chr5 18607104 18607200 -133930059 - B1_Mus2 SINE Alu -5 144 47 1 726 2477 88 3 6 chr5 18607200 18607541 -133929718 - Lx3A LINE L1 -447 6534 6195 1 726 21 36 0 0 chr5 18608060 18608088 -133929171 + AT_rich Low_complexity Low_complexity 1 28 0 1 726 504 346 0 6 chr5 18608091 18608271 -133928988 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 726 7273 17 1 1 chr5 18608271 18609093 -133928166 + RLTR13B2 LTR ERVK 1 822 0 1 726 239 188 104 0 chr5 18609094 18609142 -133928117 - RSINE1 SINE B4 -2 163 111 1 726 374 311 40 7 chr5 18609652 18609804 -133927455 + RSINE1 SINE B4 3 159 -6 1 726 1326 187 22 98 chr5 18610580 18610947 -133926312 - Lx7 LINE L1 0 7696 7358 1 726 322 257 0 0 chr5 18610997 18611067 -133926192 - Lx7 LINE L1 -342 7354 7285 1 726 226 179 26 0 chr5 18611071 18611110 -133926149 + Lx7 LINE L1 6835 6874 -822 1 726 688 152 0 53 chr5 18611145 18611333 -133925926 + GA-rich Low_complexity Low_complexity 3 180 0 1 90 32907 72 2 2 chr5 18611675 18617586 -133919673 + L1Md_F2 LINE L1 392 6300 -282 1 727 17102 99 14 11 chr5 18617580 18620994 -133916265 - L1Md_F LINE L1 -2078 3805 379 1 727 2768 81 0 3 chr5 18623964 18624337 -133912922 + L1Md_A LINE L1 6211 6582 0 1 727 6855 75 9 0 chr5 18625956 18626841 -133910418 - RLTR13B1 LTR ERVK 0 893 1 1 727 21 36 0 0 chr5 18626952 18626980 -133910279 + AT_rich Low_complexity Low_complexity 1 28 0 1 727 277 324 40 32 chr5 18628833 18629082 -133908177 + L1_Mur3 LINE L1 4257 4507 -1373 1 727 396 0 0 0 chr5 18629142 18629186 -133908073 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 727 206 216 56 11 chr5 18629406 18629495 -133907764 + (TA)n Simple_repeat Simple_repeat 1 93 0 1 727 304 314 105 42 chr5 18629504 18629743 -133907516 - Arthur1B DNA Tip100 -390 835 582 1 727 283 247 115 23 chr5 18629761 18629848 -133907411 + B1_Mus1 SINE Alu 1 95 -53 1 727 9014 129 32 211 chr5 18629848 18630946 -133906313 - L1_Mm LINE L1 -349 5534 4402 1 727 7027 43 96 0 chr5 18630946 18631857 -133905402 + L1Md_F3 LINE L1 5587 6584 0 1 727 527 217 28 0 chr5 18631859 18631965 -133905294 + B1_Mur4 SINE Alu 42 150 0 1 727 9014 129 32 211 chr5 18631965 18632349 -133904910 - L1_Mm LINE L1 -1482 4399 4346 1 727 5524 149 6 7 chr5 18632349 18633258 -133904001 - Lx2B LINE L1 -10 6990 6083 1 727 9014 129 32 211 chr5 18633258 18634515 -133902744 - L1_Mm LINE L1 -1538 4345 3198 1 727 277 157 28 28 chr5 18634652 18634724 -133902535 + (CATA)n Simple_repeat Simple_repeat 4 75 0 1 727 202 87 21 21 chr5 18634955 18635002 -133902257 + (TTAAA)n Simple_repeat Simple_repeat 4 50 0 1 727 24 0 0 0 chr5 18635033 18635057 -133902202 + AT_rich Low_complexity Low_complexity 1 24 0 1 727 216 149 0 0 chr5 18635132 18635179 -133902080 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 727 660 298 12 55 chr5 18635490 18635746 -133901513 - MIR SINE MIR -3 259 15 1 727 307 333 40 53 chr5 18635877 18636124 -133901135 - MIR SINE MIR 0 262 19 1 727 25 65 0 0 chr5 18636990 18637036 -133900223 + AT_rich Low_complexity Low_complexity 1 46 0 1 727 491 287 97 16 chr5 18638336 18638594 -133898665 - L1MB8 LINE L1 -197 5981 5703 1 727 635 254 83 29 chr5 18638928 18639204 -133898055 - L1MA9 LINE L1 -281 6031 5741 1 727 308 289 86 73 chr5 18639215 18639435 -133897824 - L1MB8 LINE L1 -579 5595 5373 1 727 1446 217 74 17 chr5 18639588 18639939 -133897320 + ORR1D1 LTR MaLR 1 371 -3 1 727 1081 218 76 22 chr5 18639942 18640219 -133897040 + ORR1D1-int LTR MaLR 1 292 -1078 1 727 1900 218 63 41 chr5 18640227 18640716 -133896543 + RLTR12B LTR ERVK 1 500 -28 1 727 2884 255 80 72 chr5 18640770 18640904 -133896355 + ORR1D1-int LTR MaLR 296 438 -932 1 727 3832 129 24 0 chr5 18640904 18641493 -133895766 + Lx2 LINE L1 6395 6997 0 1 727 2884 255 80 72 chr5 18641493 18642292 -133894967 + ORR1D1-int LTR MaLR 439 1238 -132 1 727 5482 88 0 4 chr5 18642292 18643154 -133894105 + L1Md_F2 LINE L1 5832 6582 0 1 727 2884 255 80 72 chr5 18643154 18643213 -133894046 + ORR1D1-int LTR MaLR 1239 1299 -71 1 727 2759 191 31 32 chr5 18643213 18643769 -133893490 + RLTR20B2 LTR ERVK 3 557 -3 1 727 446 214 38 19 chr5 18643769 18643847 -133893412 + ORR1D1-int LTR MaLR 1430 1509 0 1 727 877 164 28 97 chr5 18643857 18644033 -133893226 + ORR1D1 LTR MaLR 11 174 -200 1 727 691 204 25 95 chr5 18644013 18644213 -133893046 - ORR1C2 LTR MaLR -32 352 167 1 727 423 52 0 0 chr5 18644223 18644281 -133892978 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 727 602 363 33 59 chr5 18644288 18644407 -133892852 - MT2A LTR ERVL -120 413 293 1 727 4055 132 106 98 chr5 18644407 18645306 -133891953 + RMER17A2 LTR ERVK 1 906 0 1 727 602 363 33 59 chr5 18645306 18645610 -133891649 - MT2A LTR ERVL -241 292 2 1 727 227 330 58 39 chr5 18646600 18646704 -133890555 - B1F SINE Alu 0 149 44 1 727 3252 15 3 0 chr5 18647564 18647953 -133889306 + L1Md_F2 LINE L1 5779 6168 -414 1 727 189 196 0 0 chr5 18648815 18648861 -133888398 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 727 317 366 37 18 chr5 18649223 18649387 -133887872 + B4A SINE B4 3 169 -123 1 727 251 314 0 0 chr5 18649427 18649478 -133887781 + B4A SINE B4 240 290 -2 1 727 23 68 0 0 chr5 18649636 18649680 -133887579 + AT_rich Low_complexity Low_complexity 1 44 0 1 727 400 189 56 24 chr5 18650032 18650157 -133887102 - Lx9 LINE L1 0 7644 7516 1 727 4597 73 43 0 chr5 18650171 18650772 -133886487 + L1_Mus2 LINE L1 5940 6566 0 1 727 813 309 5 5 chr5 18651318 18651507 -133885752 + B3 SINE B2 1 189 -27 1 727 1036 225 109 46 chr5 18651734 18651848 -133885411 + RMER4B LTR ERVK 12 126 -459 1 727 456 19 0 0 chr5 18651848 18651901 -133885358 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 727 1036 225 109 46 chr5 18651901 18652056 -133885203 + RMER4B LTR ERVK 127 314 -271 1 727 4291 71 0 5 chr5 18652056 18652625 -133884634 + L1Md_F2 LINE L1 6015 6580 -2 1 727 1036 225 109 46 chr5 18652625 18652704 -133884555 + RMER4B LTR ERVK 315 382 -203 1 727 308 64 0 0 chr5 18652736 18652783 -133884476 - RMER4A LTR ERVK 0 466 420 1 727 250 247 41 0 chr5 18652867 18652940 -133884319 + Lx7 LINE L1 7613 7688 -8 1 727 543 179 32 49 chr5 18653401 18653524 -133883735 - ORR1C2 LTR MaLR 0 384 264 1 727 1757 180 30 90 chr5 18653526 18653928 -133883331 - RLTR1B LTR ERV1 0 512 135 2 727 10553 113 91 134 chr5 18654015 18656195 -133881064 - RLTR1B-int LTR ERV1 0 3299 1172 2 727 459 0 0 0 chr5 18656195 18656246 -133881013 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 727 10553 115 87 126 chr5 18656246 18656739 -133880520 - RLTR1B-int LTR ERV1 -2231 1467 783 2 727 242 279 80 9 chr5 18656926 18657038 -133880221 + LSU-rRNA_Hsa rRNA rRNA 3197 3316 -1719 2 727 891 256 49 68 chr5 18657303 18657773 -133879486 - RLTR1B-int LTR ERV1 -2838 461 1 2 727 1733 190 25 82 chr5 18657773 18658174 -133879085 - RLTR1B LTR ERV1 0 512 135 2 727 817 245 113 8 chr5 18658261 18658500 -133878759 - ORR1C2 LTR MaLR -119 265 2 1 727 351 205 38 25 chr5 18658501 18658581 -133878678 - ORR1C2-int LTR MaLR -3 1506 1426 1 727 311 278 28 76 chr5 18658742 18658886 -133878373 - RMER4A LTR ERVK -303 163 27 1 727 3821 245 72 55 chr5 18658979 18660126 -133877133 - ORR1D-int LTR MaLR -74 1296 131 2 727 373 77 0 0 chr5 18660163 18660215 -133877044 - ORR1C2 LTR MaLR 0 384 333 2 727 1338 227 147 6 chr5 18660215 18660555 -133876704 - RLTR17 LTR ERVK 0 692 305 2 727 1707 180 50 6 chr5 18660555 18660874 -133876385 + RLTR17 LTR ERVK 4 336 -356 2 727 586 107 33 67 chr5 18660875 18660995 -133876264 + Lx LINE L1 6538 6653 -1 2 727 242 259 106 0 chr5 18661140 18661329 -133875930 + L1M2 LINE L1 3233 3441 -2699 2 727 562 294 40 20 chr5 18661462 18661764 -133875495 + L1M2 LINE L1 3446 3753 -2390 2 727 343 371 14 7 chr5 18661849 18661993 -133875266 + L1M2 LINE L1 3881 4025 -2118 2 727 684 64 0 0 chr5 18662429 18662523 -133874736 + (CA)n Simple_repeat Simple_repeat 2 95 0 2 727 336 284 0 0 chr5 18663103 18663237 -133874022 + GA-rich Low_complexity Low_complexity 2 135 0 2 727 322 346 24 0 chr5 18663961 18664088 -133873171 - B1F2 SINE Alu -15 134 5 2 727 2968 148 96 71 chr5 18664554 18665461 -133871798 + L1_Mur2 LINE L1 504 1426 -4451 2 727 269 226 0 0 chr5 18665461 18665514 -133871745 - MTE2b LTR MaLR -260 119 67 2 727 6710 174 18 5 chr5 18665620 18666819 -133870440 + Lx4A LINE L1 5843 7056 -2 2 727 21 36 0 0 chr5 18666820 18666848 -133870411 + AT_rich Low_complexity Low_complexity 1 28 0 2 727 347 250 0 0 chr5 18667272 18667284 -133869975 + ID SINE ID 70 81 -143 2 727 472 143 0 0 chr5 18667284 18667354 -133869905 + B1_Mus2 SINE Alu 1 70 -77 2 727 282 296 0 39 chr5 18667868 18667970 -133869289 + GA-rich Low_complexity Low_complexity 3 100 0 2 727 243 362 32 11 chr5 18669422 18669517 -133867742 + PB1D7 SINE Alu 3 99 -21 2 727 200 174 43 0 chr5 18669563 18669609 -133867650 + GA-rich Low_complexity Low_complexity 3 50 0 2 727 21 0 0 0 chr5 18669867 18669888 -133867371 + AT_rich Low_complexity Low_complexity 1 21 0 2 727 1046 99 6 0 chr5 18671347 18671518 -133865741 + (GA)n Simple_repeat Simple_repeat 1 172 0 2 727 21 0 0 0 chr5 18671685 18671706 -133865553 + AT_rich Low_complexity Low_complexity 1 21 0 2 727 3764 87 11 4 chr5 18672304 18672834 -133864425 - L1_Mus2 LINE L1 0 6566 6033 2 727 2250 57 0 7 chr5 18672835 18673133 -133864126 + L1_Mus2 LINE L1 5722 6017 -549 2 727 654 85 0 0 chr5 18673243 18673337 -133863922 + (CATA)n Simple_repeat Simple_repeat 4 97 0 2 727 239 104 21 0 chr5 18673800 18673848 -133863411 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 727 8860 20 8 0 chr5 18674301 18675334 -133861925 + L1Md_T LINE L1 4546 5586 -297 2 727 8313 33 7 0 chr5 18675334 18676322 -133860937 + L1Md_T LINE L1 5587 6581 -1 2 727 471 100 0 0 chr5 18676356 18676426 -133860833 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 727 396 159 38 19 chr5 18676488 18676648 -133860611 + (TG)n Simple_repeat Simple_repeat 1 163 0 2 727 326 297 62 9 chr5 18677517 18677629 -133859630 - MLT1A1 LTR MaLR -26 382 265 2 727 505 187 111 9 chr5 18677632 18677740 -133859519 - PB1D9 SINE Alu 0 120 2 2 727 8213 50 1 2 chr5 18677757 18679328 -133857931 - L1Md_F3 LINE L1 -1 6583 5013 2 727 853 155 168 0 chr5 18679480 18679641 -133857618 - B2_Mm2 SINE B2 -7 188 1 2 727 627 48 0 0 chr5 18679704 18679787 -133857472 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 727 244 359 11 0 chr5 18680457 18680549 -133856710 + L2 LINE L2 1246 1338 -2081 2 727 271 253 36 0 chr5 18680933 18681016 -133856243 + Lx8 LINE L1 6906 6991 -482 2 727 27 0 0 0 chr5 18681863 18681890 -133855369 + AT_rich Low_complexity Low_complexity 1 27 0 2 727 279 0 0 0 chr5 18681928 18681959 -133855300 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 727 241 344 128 44 chr5 18682085 18682289 -133854970 + L2 LINE L2 2824 3044 -375 2 727 351 0 0 0 chr5 18682888 18682927 -133854332 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 727 229 241 167 33 chr5 18683175 18683295 -133853964 + Lx8 LINE L1 7303 7438 -35 2 727 337 273 0 20 chr5 18683622 18683723 -133853536 + GA-rich Low_complexity Low_complexity 3 101 0 2 727 899 132 0 7 chr5 18683977 18684129 -133853130 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 2 727 312 301 53 101 chr5 18684612 18684758 -133852501 - L2c LINE L2 -6 3420 3263 2 727 475 67 0 53 chr5 18685147 18685241 -133852018 + (GGGAA)n Simple_repeat Simple_repeat 2 90 0 2 727 207 0 0 0 chr5 18686258 18686281 -133850978 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 727 195 204 0 0 chr5 18686594 18686648 -133850611 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 727 716 197 91 0 chr5 18688712 18688844 -133848415 - B1_Mur4 SINE Alu -6 144 1 2 727 2498 106 95 18 chr5 18689388 18689829 -133847430 - IAPLTR2_Mm LTR ERVK 0 475 1 2 727 1605 208 119 0 chr5 18689939 18690343 -133846916 + Lx9 LINE L1 7192 7643 -1 2 727 432 0 0 0 chr5 18690484 18690532 -133846727 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 727 2722 144 117 17 chr5 18690532 18691112 -133846147 + RMER17B LTR ERVK 321 958 0 2 727 232 340 41 31 chr5 18691204 18691301 -133845958 + PB1D9 SINE Alu 17 114 -6 2 727 336 362 63 39 chr5 18691902 18692233 -133845026 + HERV16-int LTR ERVL 801 1139 -3857 2 727 264 320 62 0 chr5 18692299 18692427 -133844832 + HERV16-int LTR ERVL 1250 1385 -3611 2 727 243 235 168 65 chr5 18692922 18693136 -133844123 + L1MD LINE L1 5399 5634 -608 2 727 270 300 24 23 chr5 18693272 18693404 -133843855 + L1M2 LINE L1 5361 5492 -664 2 727 264 311 40 40 chr5 18693498 18693622 -133843637 - MLT1A0 LTR MaLR -4 370 247 2 727 219 290 0 28 chr5 18693644 18693715 -133843544 + GA-rich Low_complexity Low_complexity 3 71 0 2 727 272 300 120 14 chr5 18693715 18693857 -133843402 - MLT1A0 LTR MaLR -188 177 21 2 727 26 64 0 0 chr5 18694395 18694442 -133842817 + AT_rich Low_complexity Low_complexity 1 47 0 2 727 430 288 156 46 chr5 18694599 18695213 -133842046 - L1MB7 LINE L1 -152 6010 5330 2 727 344 271 77 56 chr5 18695285 18695519 -133841740 - L1MB7 LINE L1 -839 5307 5069 2 727 1936 179 56 84 chr5 18697691 18698192 -133839067 - RMER1B Other Other -5 1061 575 2 727 457 282 27 36 chr5 18698861 18699085 -133838174 + MER33 DNA MER1_type 23 244 -80 2 727 574 63 32 0 chr5 18699267 18699362 -133837897 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 2 727 243 0 0 0 chr5 18699488 18699515 -133837744 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 727 838 137 29 0 chr5 18699528 18699667 -133837592 - B1_Mus1 SINE Alu 0 148 6 2 727 281 205 68 120 chr5 18699571 18699704 -133837555 - RLTR25B LTR ERVK -519 509 384 2 727 627 318 103 50 chr5 18700077 18700389 -133836870 + ORR1D2 LTR MaLR 7 357 -17 2 727 255 226 32 0 chr5 18701101 18701163 -133836096 + ORR1D2 LTR MaLR 7 70 -300 2 727 303 325 91 42 chr5 18701803 18702044 -133835215 - L1MEd LINE L1 -4864 1255 1003 2 727 2014 269 23 12 chr5 18702705 18703186 -133834073 + Lx5 LINE L1 6557 7042 -8 2 727 624 195 0 17 chr5 18703206 18703378 -133833881 + GA-rich Low_complexity Low_complexity 3 171 0 2 727 264 100 0 0 chr5 18703707 18703747 -133833512 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 727 475 352 93 38 chr5 18706727 18707178 -133830081 - ERVL-int LTR ERVL -3350 2407 1932 2 727 249 181 121 0 chr5 18707556 18707639 -133829620 + Lx9 LINE L1 7543 7635 -9 2 727 2358 133 20 45 chr5 18708280 18708729 -133828530 + Lx2 LINE L1 6559 6996 -1 2 727 228 149 0 0 chr5 18709013 18709060 -133828199 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 727 23 0 0 0 chr5 18709111 18709134 -133828125 + AT_rich Low_complexity Low_complexity 1 23 0 2 727 23 54 0 0 chr5 18709206 18709243 -133828016 + AT_rich Low_complexity Low_complexity 1 37 0 2 727 269 304 0 25 chr5 18712098 18712179 -133825080 - B1F2 SINE Alu -35 114 36 2 727 387 222 33 25 chr5 18713968 18714088 -133823171 - URR1B DNA MER1_type -3 222 102 2 727 549 0 0 0 chr5 18714442 18714503 -133822756 + (GAGAA)n Simple_repeat Simple_repeat 3 63 0 2 727 185 250 31 0 chr5 18714508 18714572 -133822687 + GA-rich Low_complexity Low_complexity 1 66 0 2 727 870 92 6 44 chr5 18714574 18714756 -133822503 + (GAGAA)n Simple_repeat Simple_repeat 3 177 0 2 727 780 209 177 5 chr5 18715206 18715398 -133821861 - URR1B DNA MER1_type 0 225 1 2 727 257 71 48 0 chr5 18715703 18715745 -133821514 + Lx9 LINE L1 7413 7456 -188 2 727 427 158 83 8 chr5 18715819 18715940 -133821319 + Lx9 LINE L1 7514 7643 -1 2 727 21 36 0 0 chr5 18716217 18716245 -133821014 + AT_rich Low_complexity Low_complexity 1 28 0 2 727 3271 59 14 0 chr5 18716275 18716699 -133820560 - L1_Mus2 LINE L1 0 6566 6137 2 727 21 36 0 0 chr5 18718968 18718996 -133818263 + AT_rich Low_complexity Low_complexity 1 28 0 2 727 22 35 0 0 chr5 18719582 18719611 -133817648 + AT_rich Low_complexity Low_complexity 1 29 0 2 727 218 312 40 50 chr5 18720008 18720109 -133817150 + B1F SINE Alu 6 105 -44 2 727 4891 74 0 0 chr5 18720794 18721427 -133815832 + L1_Mus1 LINE L1 5934 6566 -1 2 727 21 0 0 0 chr5 18721427 18721448 -133815811 + AT_rich Low_complexity Low_complexity 1 21 0 2 727 645 283 95 34 chr5 18721890 18722248 -133815011 + Lx8 LINE L1 7059 7438 -35 2 727 23 0 0 0 chr5 18722281 18722304 -133814955 + AT_rich Low_complexity Low_complexity 1 23 0 2 727 474 61 0 0 chr5 18724743 18724809 -133812450 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 727 4509 143 49 4 chr5 18725319 18726078 -133811181 - Lx4A LINE L1 -364 6694 5902 2 727 2100 178 8 13 chr5 18726078 18726455 -133810804 + Lx4A LINE L1 6681 7055 -3 2 727 2868 230 107 6 chr5 18726611 18727323 -133809936 - Lx6 LINE L1 -803 6657 5874 2 727 5485 114 9 26 chr5 18727323 18728234 -133809025 + RMER17A2 LTR ERVK 1 895 -11 2 727 24 32 0 0 chr5 18728324 18728355 -133808904 + AT_rich Low_complexity Low_complexity 1 31 0 2 727 32 43 0 0 chr5 18728429 18728475 -133808784 + AT_rich Low_complexity Low_complexity 1 46 0 2 727 549 185 45 38 chr5 18728766 18728830 -133808429 - Lx9 LINE L1 -21 7623 7565 2 727 3006 115 0 5 chr5 18728830 18729265 -133807994 + RLTR10C LTR ERVK 1 433 -3 3 727 549 185 45 38 chr5 18729265 18729357 -133807902 - Lx9 LINE L1 -80 7564 7466 2 727 266 296 0 0 chr5 18729404 18729475 -133807784 + ID4 SINE ID 5 75 -8 3 727 203 146 0 24 chr5 18729475 18729517 -133807742 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 3 727 1384 252 55 42 chr5 18729990 18730392 -133806867 - MTD LTR MaLR 0 419 13 3 727 185 327 69 0 chr5 18731268 18731369 -133805890 - MIR SINE MIR -105 157 50 3 727 205 211 0 0 chr5 18732582 18732620 -133804639 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 727 248 297 0 0 chr5 18732771 18732845 -133804414 + (CCG)n Simple_repeat Simple_repeat 3 76 0 3 727 204 139 28 0 chr5 18733739 18733775 -133803484 + GA-rich Low_complexity Low_complexity 1 37 0 3 727 228 397 102 7 chr5 18735128 18735275 -133801984 - RSINE1 SINE B4 -2 163 3 3 727 28 29 0 0 chr5 18735401 18735436 -133801823 + AT_rich Low_complexity Low_complexity 1 35 0 3 727 22 70 0 0 chr5 18735905 18735948 -133801311 + AT_rich Low_complexity Low_complexity 1 43 0 3 727 24 0 0 0 chr5 18736041 18736065 -133801194 + AT_rich Low_complexity Low_complexity 1 24 0 3 727 237 324 26 26 chr5 18737400 18737476 -133799783 - ID4 SINE ID -2 81 6 3 727 203 239 90 0 chr5 18738271 18738338 -133798921 + MIR SINE MIR 183 255 -7 3 727 671 243 53 11 chr5 18738410 18738450 -133798809 - B3A SINE B2 -2 196 158 3 727 405 0 0 0 chr5 18738450 18738495 -133798764 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 727 671 243 53 11 chr5 18738495 18738641 -133798618 - B3A SINE B2 -41 157 2 3 727 774 202 10 73 chr5 18738901 18739093 -133798166 - URR1B DNA MER1_type -5 220 41 3 727 1191 61 0 0 chr5 18741542 18741689 -133795570 + B1_Mus2 SINE Alu 1 147 0 3 727 736 296 10 5 chr5 18741732 18741936 -133795323 - Lx6 LINE L1 -63 7397 7193 3 727 24 67 0 0 chr5 18742007 18742052 -133795207 + AT_rich Low_complexity Low_complexity 1 45 0 3 727 2312 119 22 84 chr5 18742072 18742523 -133794736 - Lx3C LINE L1 -2 6974 6552 3 727 2784 115 11 9 chr5 18742523 18742969 -133794290 - Lx3C LINE L1 -684 6292 5846 3 727 25 31 0 0 chr5 18742991 18743023 -133794236 + AT_rich Low_complexity Low_complexity 1 32 0 3 728 476 332 115 76 chr5 18743898 18744334 -133792925 + MLT1L LTR MaLR 15 467 -143 3 728 27 62 0 0 chr5 18745481 18745529 -133791730 + AT_rich Low_complexity Low_complexity 1 48 0 3 728 663 222 56 18 chr5 18746395 18746592 -133790667 - ORR1D1 LTR MaLR -163 231 26 3 728 373 306 35 18 chr5 18746849 18746962 -133790297 + B4A SINE B4 107 221 -71 3 728 647 281 41 11 chr5 18747305 18747515 -133789744 + B3A SINE B2 1 216 0 3 728 312 309 153 8 chr5 18748006 18748130 -133789129 - MLT2B4 LTR ERVL -198 358 217 3 728 222 150 0 0 chr5 18748232 18748272 -133788987 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 728 575 337 82 84 chr5 18749066 18749520 -133787739 - MLT2B4 LTR ERVL 0 464 12 3 728 501 17 0 0 chr5 18749523 18749581 -133787678 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 728 21 0 0 0 chr5 18749616 18749637 -133787622 + AT_rich Low_complexity Low_complexity 1 21 0 3 728 226 250 105 53 chr5 18750530 18750606 -133786653 - 7SLRNA srpRNA srpRNA -224 90 11 3 728 234 150 0 0 chr5 18750777 18750817 -133786442 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 728 192 77 0 0 chr5 18750817 18750843 -133786416 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 728 835 247 6 6 chr5 18750849 18751024 -133786235 - B3A SINE B2 -22 176 2 3 728 356 306 56 39 chr5 18752262 18752509 -133784750 - MIR SINE MIR -9 259 6 3 728 285 162 0 0 chr5 18753833 18753901 -133783358 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 728 315 280 119 10 chr5 18754785 18754886 -133782373 + B1_Mur3 SINE Alu 1 112 -37 3 728 465 19 0 0 chr5 18754897 18754951 -133782308 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 728 240 309 0 0 chr5 18754967 18755022 -133782237 + G-rich Low_complexity Low_complexity 3 57 0 3 728 21 57 0 0 chr5 18755206 18755241 -133782018 + AT_rich Low_complexity Low_complexity 1 35 0 3 728 32 0 0 0 chr5 18755290 18755322 -133781937 + AT_rich Low_complexity Low_complexity 1 32 0 3 728 242 312 11 0 chr5 18755450 18755543 -133781716 - Lx9 LINE L1 -161 7483 7390 3 728 468 295 49 10 chr5 18755537 18755839 -133781420 + Lx9 LINE L1 7070 7418 -226 3 728 3254 54 2 5 chr5 18757240 18757653 -133779606 - L1Md_F2 LINE L1 -4 6578 6167 3 728 507 82 0 0 chr5 18758226 18758299 -133778960 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 728 274 205 64 0 chr5 18758802 18758880 -133778379 + Lx9 LINE L1 7561 7643 -1 3 728 368 91 0 15 chr5 18759225 18759292 -133777967 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 728 24 0 0 0 chr5 18759300 18759324 -133777935 + AT_rich Low_complexity Low_complexity 1 24 0 3 728 782 149 163 10 chr5 18759660 18759844 -133777415 - Lx3C LINE L1 -2 6998 6780 3 728 1117 114 6 24 chr5 18759827 18759997 -133777262 + Lx3C LINE L1 6590 6756 -220 3 728 506 270 125 11 chr5 18760538 18760714 -133776545 - MLT1L LTR MaLR 0 610 415 3 728 22 0 0 0 chr5 18761731 18761753 -133775506 + AT_rich Low_complexity Low_complexity 1 22 0 3 728 221 259 0 0 chr5 18766859 18766913 -133770346 + T-rich Low_complexity Low_complexity 2 55 0 3 728 28 48 0 0 chr5 18767145 18767187 -133770072 + AT_rich Low_complexity Low_complexity 1 42 0 3 728 2760 178 71 21 chr5 18768244 18768871 -133768388 + RMER17B LTR ERVK 1 580 -378 3 728 1732 237 69 5 chr5 18768882 18769331 -133767928 - Lx6 LINE L1 -568 6892 6415 3 728 21 36 0 0 chr5 18769537 18769565 -133767694 + AT_rich Low_complexity Low_complexity 1 28 0 3 728 22 56 0 0 chr5 18770329 18770365 -133766894 + AT_rich Low_complexity Low_complexity 1 36 0 3 728 211 299 26 13 chr5 18770395 18770473 -133766786 + CT-rich Low_complexity Low_complexity 3 81 0 3 728 439 309 69 5 chr5 18770511 18770700 -133766559 + B3 SINE B2 1 201 -15 3 728 363 78 0 0 chr5 18772058 18772109 -133765150 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 3 728 3453 177 11 61 chr5 18773145 18774793 -133762466 - L1VL4 LINE L1 -3848 2038 548 3 728 250 205 26 0 chr5 18776241 18776319 -133760940 + CT-rich Low_complexity Low_complexity 3 82 0 3 728 916 318 92 24 chr5 18776986 18777444 -133759815 - MLT1D LTR MaLR -2 503 15 3 728 35 54 0 0 chr5 18778830 18778886 -133758373 + AT_rich Low_complexity Low_complexity 1 56 0 3 728 36 62 0 0 chr5 18780131 18780195 -133757064 + AT_rich Low_complexity Low_complexity 1 64 0 3 728 238 260 0 0 chr5 18780749 18780799 -133756460 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 728 321 331 86 72 chr5 18780811 18781044 -133756215 - B4 SINE B4 0 292 57 3 728 5136 180 10 10 chr5 18781140 18782152 -133755107 + L1_Mur2 LINE L1 4394 5405 -472 3 728 464 162 38 0 chr5 18782231 18782336 -133754923 - RMER1B Other Other -1 1065 957 3 728 2292 212 158 14 chr5 18782331 18782989 -133754270 + RMER1A Other Other 249 876 -154 3 728 425 103 0 14 chr5 18782995 18783064 -133754195 + (TGG)n Simple_repeat Simple_repeat 1 68 0 3 728 343 287 49 10 chr5 18783065 18783167 -133754092 - B4A SINE B4 -185 107 2 3 728 606 345 35 19 chr5 18784566 18784826 -133752433 + B4A SINE B4 6 269 -23 3 728 3173 58 5 2 chr5 18786332 18786727 -133750532 + MTA_Mm LTR MaLR 1 396 0 3 728 341 333 22 0 chr5 18787649 18787784 -133749475 + L1MA6 LINE L1 6163 6300 0 3 728 1072 94 0 0 chr5 18787901 18788039 -133749220 + B1_Mus1 SINE Alu 1 138 -10 3 728 207 0 0 0 chr5 18788039 18788062 -133749197 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 728 341 270 89 10 chr5 18788953 18789054 -133748205 - PB1D10 SINE Alu -8 109 1 3 728 779 161 0 13 chr5 18789266 18789423 -133747836 + (CATA)n Simple_repeat Simple_repeat 1 155 0 3 728 207 0 0 0 chr5 18792627 18792650 -133744609 + (A)n Simple_repeat Simple_repeat 1 23 0 3 728 441 0 0 0 chr5 18792991 18793040 -133744219 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 728 2516 69 0 0 chr5 18793333 18793666 -133743593 + L1Md_F2 LINE L1 6249 6581 -1 3 728 27 62 0 0 chr5 18794812 18794860 -133742399 + AT_rich Low_complexity Low_complexity 1 48 0 3 728 266 256 13 0 chr5 18794917 18794995 -133742264 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 728 231 36 0 0 chr5 18795166 18795194 -133742065 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 728 1200 111 0 0 chr5 18796175 18796355 -133740904 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3 728 213 265 0 0 chr5 18796356 18796439 -133740820 + GA-rich Low_complexity Low_complexity 1 83 0 3 728 192 182 0 0 chr5 18796437 18796481 -133740778 + (CAGGG)n Simple_repeat Simple_repeat 2 45 0 3 728 1427 201 8 124 chr5 18796741 18797128 -133740131 - MTB_Mm LTR MaLR -14 393 52 3 728 1949 298 132 34 chr5 18797382 18798387 -133738872 - Lx6 LINE L1 -40 7420 6058 3 728 976 216 95 8 chr5 18798393 18798831 -133738428 - Lx6 LINE L1 -1107 5943 5436 3 728 3111 194 66 26 chr5 18798835 18799567 -133737692 + Lx6 LINE L1 4630 5390 -490 3 728 39 50 0 0 chr5 18799709 18799769 -133737490 + AT_rich Low_complexity Low_complexity 1 60 0 3 728 689 222 14 0 chr5 18799822 18799966 -133737293 + B1_Mus1 SINE Alu 3 148 0 3 728 2677 70 3 19 chr5 18800810 18801174 -133736085 + L1_Mus1 LINE L1 6210 6567 0 3 728 346 221 199 40 chr5 18801192 18801343 -133735916 + L1MC4 LINE L1 7336 7510 -532 3 728 447 208 138 94 chr5 18801364 18801502 -133735757 + B1_Mur4 SINE Alu 5 148 -2 3 728 637 257 54 54 chr5 18801692 18802025 -133735234 + L1MC4 LINE L1 7710 8042 0 3 728 308 327 9 28 chr5 18802280 18802387 -133734872 + ID_B1 SINE B4 29 133 -91 3 728 504 68 0 0 chr5 18803313 18803386 -133733873 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 728 27 0 0 0 chr5 18803713 18803740 -133733519 + AT_rich Low_complexity Low_complexity 1 27 0 3 728 4266 257 68 23 chr5 18804161 18804563 -133732696 - Lx6 LINE L1 -294 7166 6762 3 728 324 0 0 0 chr5 18804563 18804599 -133732660 + (TTA)n Simple_repeat Simple_repeat 1 36 0 3 728 2051 81 31 7 chr5 18804599 18804886 -133732373 - L1_Mus3 LINE L1 -16 6622 6329 3 728 4266 257 68 23 chr5 18804886 18805725 -133731534 - Lx6 LINE L1 -699 6761 5869 3 728 569 176 0 42 chr5 18805739 18805858 -133731401 + L1_Mur3 LINE L1 5767 5880 0 4 728 1523 267 47 56 chr5 18806496 18806586 -133730673 - RLTR20B3 LTR ERVK -1 576 483 4 728 666 25 0 0 chr5 18806586 18806666 -133730593 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 728 1523 267 47 56 chr5 18806666 18806690 -133730569 - RLTR20B3 LTR ERVK -95 482 475 4 728 2633 138 5 0 chr5 18806690 18807110 -133730149 - Lx2 LINE L1 0 6997 6576 4 728 1523 267 47 56 chr5 18807110 18807566 -133729693 - RLTR20B3 LTR ERVK -103 474 10 4 728 278 272 123 39 chr5 18808276 18808406 -133728853 + ID_B1 SINE B4 80 220 -4 4 728 7953 52 2 6 chr5 18808523 18809519 -133727740 - L1Md_F2 LINE L1 -2 6580 5589 4 728 21 36 0 0 chr5 18809655 18809683 -133727576 + AT_rich Low_complexity Low_complexity 1 28 0 4 728 28 29 0 0 chr5 18810260 18810295 -133726964 + AT_rich Low_complexity Low_complexity 1 35 0 4 728 4560 132 19 1 chr5 18810431 18811151 -133726108 - Lx2 LINE L1 0 6997 6265 4 728 22 56 0 0 chr5 18811186 18811222 -133726037 + AT_rich Low_complexity Low_complexity 1 36 0 4 728 416 291 90 42 chr5 18811260 18811472 -133725787 - Lx8 LINE L1 -73 7400 7179 4 728 203 203 0 17 chr5 18811473 18811533 -133725726 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 728 21 36 0 0 chr5 18811771 18811799 -133725460 + AT_rich Low_complexity Low_complexity 1 28 0 4 728 242 281 29 10 chr5 18812370 18812474 -133724785 + (TA)n Simple_repeat Simple_repeat 1 106 0 4 728 772 148 51 13 chr5 18812474 18812630 -133724629 + Lx4B LINE L1 5485 5657 -1401 4 728 632 300 13 39 chr5 18812632 18812861 -133724398 - ID_B1 SINE B4 0 224 2 4 728 336 48 0 0 chr5 18813564 18813606 -133723653 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 728 742 30 30 0 chr5 18813898 18813998 -133723261 + (TTTC)n Simple_repeat Simple_repeat 4 106 0 4 728 186 118 0 0 chr5 18814093 18814127 -133723132 + (T)n Simple_repeat Simple_repeat 1 34 0 4 728 26 64 0 0 chr5 18815019 18815066 -133722193 + AT_rich Low_complexity Low_complexity 1 47 0 4 728 319 304 124 60 chr5 18815179 18815413 -133721846 + MTD LTR MaLR 111 359 -60 4 728 278 306 20 0 chr5 18815471 18815569 -133721690 - Lx9 LINE L1 -468 7176 7077 4 728 303 296 0 20 chr5 18815725 18815823 -133721436 + Lx9 LINE L1 7140 7219 -425 4 728 282 271 0 0 chr5 18815823 18815908 -133721351 + (ATATG)n Simple_repeat Simple_repeat 4 88 0 4 728 557 258 110 7 chr5 18815948 18816229 -133721030 + Lx9 LINE L1 7325 7634 -10 4 728 22 0 0 0 chr5 18816236 18816258 -133721001 + AT_rich Low_complexity Low_complexity 1 22 0 4 728 22 56 0 0 chr5 18817053 18817089 -133720170 + AT_rich Low_complexity Low_complexity 1 36 0 4 728 570 67 0 0 chr5 18817143 18817218 -133720041 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 728 28 0 0 0 chr5 18817735 18817763 -133719496 + AT_rich Low_complexity Low_complexity 1 28 0 4 728 322 258 20 10 chr5 18817995 18818093 -133719166 + Lx9 LINE L1 7288 7386 -258 4 728 582 258 51 74 chr5 18818309 18818485 -133718774 - ORR1D2 LTR MaLR -198 172 1 4 728 186 224 20 0 chr5 18819223 18819272 -133717987 + MIR SINE MIR 175 224 -38 4 728 273 350 32 8 chr5 18820517 18820641 -133716618 - B1F SINE Alu 0 149 23 4 728 192 228 0 0 chr5 18820888 18820945 -133716314 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 728 1272 211 168 9 chr5 18821617 18821957 -133715302 + ORR1B1 LTR MaLR 1 394 0 4 728 261 0 0 0 chr5 18822069 18822098 -133715161 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 728 7447 183 36 6 chr5 18822160 18823303 -133713956 - Lx4B LINE L1 -4 7054 5875 4 728 3201 58 8 5 chr5 18823303 18823698 -133713561 + MTA_Mm LTR MaLR 1 396 0 4 728 189 0 0 0 chr5 18823699 18823720 -133713539 + (TA)n Simple_repeat Simple_repeat 2 22 0 4 728 7447 193 33 6 chr5 18823720 18824036 -133713223 - Lx4B LINE L1 -1184 5874 5551 4 728 7217 148 46 42 chr5 18824035 18825165 -133712094 + L1_Mur2 LINE L1 4145 5236 -641 4 728 240 35 0 0 chr5 18825165 18825194 -133712065 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 728 7217 148 46 42 chr5 18825194 18825486 -133711773 + L1_Mur2 LINE L1 5237 5573 -304 4 728 757 270 42 14 chr5 18825475 18825689 -133711570 - Lx6 LINE L1 -15 7445 7226 4 728 396 291 86 20 chr5 18826202 18826353 -133710906 - MLT1C LTR MaLR -7 460 300 4 728 236 302 100 13 chr5 18829674 18829799 -133707460 + B1_Mur2 SINE Alu 1 145 -2 4 728 220 282 177 26 chr5 18830200 18830313 -133706946 + B1F SINE Alu 1 130 -19 4 728 321 306 42 63 chr5 18830828 18830855 -133706404 + ORR1D1 LTR MaLR 8 31 -339 4 728 258 32 0 0 chr5 18830855 18830886 -133706373 + (CTCA)n Simple_repeat Simple_repeat 3 33 0 4 728 587 271 280 30 chr5 18830886 18831157 -133706102 + ORR1D1 LTR MaLR 32 373 -1 4 728 197 213 33 0 chr5 18831338 18831399 -133705860 + (CATA)n Simple_repeat Simple_repeat 4 66 0 4 728 348 148 82 0 chr5 18831401 18831462 -133705797 + HAL1-3A_ME LINE L1 1977 2042 -816 4 728 249 174 0 0 chr5 18832255 18832324 -133704935 + T-rich Low_complexity Low_complexity 1 69 0 4 728 2643 92 3 16 chr5 18832809 18833197 -133704062 + L1Md_F2 LINE L1 6200 6582 0 4 728 274 312 4 29 chr5 18833401 18833555 -133703704 - L1MD1 LINE L1 -339 6020 5873 4 728 429 219 52 9 chr5 18833658 18833773 -133703486 + L1MD LINE L1 4751 4870 -1276 4 728 983 258 92 5 chr5 18833770 18834242 -133703017 - L1MD1 LINE L1 -681 5678 5161 4 728 618 296 27 14 chr5 18834246 18834465 -133702794 - ID_B1 SINE B4 -2 222 1 4 728 2045 39 12 0 chr5 18834473 18834730 -133702529 + L1Md_F3 LINE L1 6311 6570 -14 4 728 359 262 71 8 chr5 18834789 18834916 -133702343 - L1MD1 LINE L1 -1203 4943 4809 4 728 216 248 0 0 chr5 18835009 18835110 -133702149 + (CA)n Simple_repeat Simple_repeat 2 102 0 4 728 263 327 0 0 chr5 18835141 18835251 -133702008 + (CA)n Simple_repeat Simple_repeat 1 110 0 4 728 241 331 77 23 chr5 18835287 18835636 -133701623 - L1MD1 LINE L1 -3617 2529 2162 4 728 2936 69 0 0 chr5 18835773 18836149 -133701110 - L1_Mm LINE L1 -771 5112 4737 4 728 2120 39 0 4 chr5 18836149 18836407 -133700852 - L1Md_F2 LINE L1 -3 6579 6323 4 728 447 82 0 0 chr5 18836407 18836468 -133700791 - L1Md_F2 LINE L1 -608 5974 5914 4 728 4333 50 2 7 chr5 18836455 18837001 -133700258 + L1Md_F2 LINE L1 5043 5585 -298 4 728 7796 54 1 14 chr5 18837002 18838010 -133699249 + L1Md_F2 LINE L1 5587 6581 -1 4 728 1107 65 0 31 chr5 18838457 18838617 -133698642 - L1_Mus2 LINE L1 0 6566 6412 4 728 206 105 26 0 chr5 18838851 18838889 -133698370 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 728 887 64 29 0 chr5 18840747 18840887 -133696372 + L1_Mus3 LINE L1 6489 6632 -6 4 728 244 383 11 11 chr5 18841213 18841308 -133695951 - MIR SINE MIR -152 110 16 4 728 233 295 32 89 chr5 18841403 18841526 -133695733 + L3 LINE CR1 4122 4237 -252 4 728 950 78 0 0 chr5 18841563 18841691 -133695568 + B1_Mus2 SINE Alu 20 147 0 4 728 438 154 0 0 chr5 18841691 18841769 -133695490 + A-rich Low_complexity Low_complexity 1 78 0 4 728 505 40 13 26 chr5 18842227 18842304 -133694955 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 4 728 239 268 0 40 chr5 18842323 18842397 -133694862 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 4 728 330 205 43 43 chr5 18842714 18842877 -133694382 + (TA)n Simple_repeat Simple_repeat 2 164 0 4 728 392 332 23 64 chr5 18842902 18843192 -133694067 - Lx9 LINE L1 -398 7246 6886 4 728 22 35 0 0 chr5 18844628 18844657 -133692602 + AT_rich Low_complexity Low_complexity 1 29 0 4 728 26 82 0 0 chr5 18844763 18844824 -133692435 + AT_rich Low_complexity Low_complexity 1 61 0 4 728 1381 194 48 0 chr5 18845724 18846018 -133691241 - Lx3C LINE L1 -8 6968 6661 4 728 1188 48 0 0 chr5 18847295 18847440 -133689819 + B1_Mm SINE Alu 2 146 -1 4 728 35656 48 10 5 chr5 18847484 18852775 -133684484 + L1Md_T LINE L1 306 5586 -297 4 728 8318 37 0 0 chr5 18852776 18853771 -133683488 + L1Md_T LINE L1 5588 6582 0 4 728 311 135 0 0 chr5 18853771 18853823 -133683436 + MusHAL1 LINE L1 1259 1310 -1402 4 728 615 130 0 0 chr5 18854757 18854857 -133682402 + (TA)n Simple_repeat Simple_repeat 2 101 0 4 728 26 0 0 0 chr5 18855454 18855480 -133681779 + AT_rich Low_complexity Low_complexity 1 26 0 4 728 351 0 0 0 chr5 18855588 18855627 -133681632 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 728 22 0 0 0 chr5 18856942 18856964 -133680295 + AT_rich Low_complexity Low_complexity 1 22 0 4 728 251 349 29 52 chr5 18857162 18857298 -133679961 - MIRc SINE MIR -97 171 39 4 728 5596 108 8 7 chr5 18857360 18858179 -133679080 - Lx LINE L1 -6 6648 5829 4 728 463 325 64 5 chr5 18858556 18858760 -133678499 - MLT1C LTR MaLR -181 286 71 4 728 235 190 0 65 chr5 18858775 18858837 -133678422 - L1MA10 LINE L1 -106 6228 6171 4 728 31 26 0 0 chr5 18859877 18859915 -133677344 + AT_rich Low_complexity Low_complexity 1 38 0 4 728 370 77 45 15 chr5 18860120 18860186 -133677073 + (TTTTC)n Simple_repeat Simple_repeat 3 70 0 4 728 1090 82 0 26 chr5 18860202 18860353 -133676906 - B1_Mus1 SINE Alu 0 148 2 4 728 330 284 0 8 chr5 18861387 18861504 -133675755 + (CA)n Simple_repeat Simple_repeat 1 116 0 4 728 381 324 74 36 chr5 18861545 18862074 -133675185 + L1M7 LINE L1 756 1304 -5007 4 728 228 290 149 16 chr5 18862278 18862527 -133674732 + L1MA7 LINE L1 6004 6285 -6 4 728 312 282 219 32 chr5 18862656 18862843 -133674416 + L1M7 LINE L1 1572 1793 -4422 4 728 1468 237 90 17 chr5 18862889 18863538 -133673721 - Lx6 LINE L1 -26 7434 6455 4 728 762 116 0 0 chr5 18863636 18863774 -133673485 + (TG)n Simple_repeat Simple_repeat 2 139 0 4 728 597 14 0 0 chr5 18864555 18864625 -133672634 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 728 279 285 24 8 chr5 18865542 18865666 -133671593 + L1MA9 LINE L1 5814 5939 -373 4 728 438 342 0 0 chr5 18865843 18865957 -133671302 - PB1 SINE Alu -1 126 13 4 728 1181 54 0 0 chr5 18866351 18866498 -133670761 - B1_Mm SINE Alu 0 147 1 4 728 5802 107 15 24 chr5 18866784 18867697 -133669562 - Lx3A LINE L1 -6 6975 6071 4 728 459 0 0 0 chr5 18867856 18867907 -133669352 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 728 283 332 147 10 chr5 18870166 18870364 -133666895 - MIRb SINE MIR -40 228 4 4 728 384 333 27 0 chr5 18870909 18871020 -133666239 - PB1D7 SINE Alu -3 117 4 4 728 603 0 0 0 chr5 18871254 18871321 -133665938 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 728 608 65 108 0 chr5 18871331 18871424 -133665835 - B1_Mm SINE Alu -3 144 42 4 728 243 0 318 0 chr5 18871447 18871579 -133665680 + (CCTG)n Simple_repeat Simple_repeat 2 175 0 5 728 395 0 0 163 chr5 18871499 18871714 -133665545 + (CTCTG)n Simple_repeat Simple_repeat 1 180 0 5 728 391 68 0 33 chr5 18871716 18871777 -133665482 - B1_Mus2 SINE Alu -88 59 1 5 728 227 198 93 0 chr5 18871777 18871812 -133665447 - ORR1B1-int LTR MaLR -862 647 605 5 728 377 160 38 51 chr5 18871777 18871793 -133665466 - ID_B1 SINE B4 -77 145 70 5 728 9773 67 30 50 chr5 18871812 18873278 -133663981 - Lx3_Mus LINE L1 -20 6989 5556 5 728 191 295 25 37 chr5 18873809 18873890 -133663369 + L3 LINE CR1 2101 2180 -2309 5 728 197 150 49 24 chr5 18873976 18874017 -133663242 - MIR SINE MIR -115 147 106 5 729 396 0 0 0 chr5 18875168 18875212 -133662047 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 729 215 380 53 7 chr5 18875391 18875542 -133661717 - MIR SINE MIR -76 186 29 5 729 1131 287 84 3 chr5 18875788 18876120 -133661139 - ORR1E LTR MaLR 0 359 1 5 729 553 301 22 7 chr5 18876120 18876257 -133661002 + B1F1 SINE Alu 3 141 -8 5 729 1318 199 38 3 chr5 18877072 18877385 -133659874 - L1_Mur3 LINE L1 -4120 1760 1437 5 729 701 265 63 11 chr5 18877383 18877574 -133659685 + Lx5 LINE L1 6843 7043 -7 5 729 477 0 0 0 chr5 18877592 18877645 -133659614 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 729 1169 312 51 34 chr5 18877645 18878153 -133659106 + Lx8 LINE L1 6955 7471 -2 5 729 22 56 0 0 chr5 18878387 18878423 -133658836 + AT_rich Low_complexity Low_complexity 1 36 0 5 729 27 29 0 0 chr5 18878939 18878973 -133658286 + AT_rich Low_complexity Low_complexity 1 34 0 5 729 452 261 39 0 chr5 18879271 18879401 -133657858 - Lx6 LINE L1 -14 7446 7312 5 729 5315 254 45 59 chr5 18879396 18881421 -133655838 - Lx7 LINE L1 -358 7338 5353 5 729 663 214 58 58 chr5 18881628 18881764 -133655495 - Lx7 LINE L1 -1035 4845 4715 5 729 1445 213 52 23 chr5 18881764 18882110 -133655149 - RLTR15 LTR ERVK 0 359 4 5 729 663 214 58 58 chr5 18882110 18882181 -133655078 - Lx7 LINE L1 -1166 4714 4640 5 729 7478 63 1 2 chr5 18882183 18883595 -133653664 - L1Md_F2 LINE L1 -12 6570 5161 5 729 1026 166 115 4 chr5 18883581 18883859 -133653400 - Lx7 LINE L1 -3547 2333 2025 5 729 206 160 19 39 chr5 18883902 18883954 -133653305 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 5 729 352 319 88 5 chr5 18883956 18884161 -133653098 - ID_B1 SINE B4 -2 222 1 5 729 336 83 0 0 chr5 18884962 18885010 -133652249 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 729 348 24 0 0 chr5 18885010 18885051 -133652208 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 729 990 220 19 54 chr5 18885290 18885549 -133651710 + RMER1C Other Other 1089 1338 -4 5 729 387 41 0 0 chr5 18885586 18885635 -133651624 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 729 243 290 84 13 chr5 18885770 18885864 -133651395 + L2c LINE L2 3237 3349 -38 5 729 22 35 0 0 chr5 18887462 18887491 -133649768 + AT_rich Low_complexity Low_complexity 1 29 0 5 729 414 39 0 0 chr5 18887696 18887748 -133649511 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 5 729 195 42 0 0 chr5 18888453 18888477 -133648782 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 729 771 309 84 62 chr5 18888486 18889382 -133647877 - Lx7 LINE L1 -1799 5897 4935 5 729 482 337 80 44 chr5 18889652 18890133 -133647126 - L1M2 LINE L1 -2796 3350 2843 5 729 7420 91 9 3 chr5 18890135 18891371 -133645888 - L1_Mus3 LINE L1 -7 6631 5389 5 729 3002 110 5 0 chr5 18891371 18891816 -133645443 + L1_Mus3 LINE L1 4924 5370 -513 5 729 258 304 90 14 chr5 18891821 18892035 -133645224 - L1M2 LINE L1 -3288 2855 2621 5 729 5370 38 84 0 chr5 18892058 18892744 -133644515 - L1Md_F2 LINE L1 -2 6580 5837 5 729 458 0 0 0 chr5 18892744 18892794 -133644465 + L1Md_F2 LINE L1 5796 5845 -737 5 729 2637 271 18 37 chr5 18892858 18893207 -133644052 + Lx7 LINE L1 5789 6120 -1576 5 729 1615 27 0 0 chr5 18893207 18893393 -133643866 - B2_Mm1a SINE B2 -6 187 2 5 729 2637 253 132 21 chr5 18893393 18894526 -133642733 + Lx7 LINE L1 6121 7379 -81 5 729 479 206 135 0 chr5 18894585 18894711 -133642548 + MTD LTR MaLR 277 419 0 5 729 278 284 7 0 chr5 18895831 18895979 -133641280 + (CA)n Simple_repeat Simple_repeat 2 150 0 5 729 183 114 0 0 chr5 18896095 18896130 -133641129 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5 729 603 222 0 0 chr5 18896975 18897128 -133640131 + (TG)n Simple_repeat Simple_repeat 1 153 0 5 729 297 219 0 0 chr5 18897145 18897218 -133640041 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 729 691 269 58 38 chr5 18897717 18897960 -133639299 + MER33 DNA MER1_type 7 243 -81 5 729 449 347 48 0 chr5 18898189 18898356 -133638903 + MIRb SINE MIR 83 257 -11 5 729 307 200 55 23 chr5 18899983 18899992 -133637267 + (TA)n Simple_repeat Simple_repeat 1 9 0 5 729 402 108 0 0 chr5 18899992 18900057 -133637202 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 729 307 200 55 23 chr5 18900057 18900175 -133637084 + (TA)n Simple_repeat Simple_repeat 1 122 0 5 729 25 0 0 0 chr5 18900546 18900571 -133636688 + AT_rich Low_complexity Low_complexity 1 25 0 5 729 345 43 0 0 chr5 18900665 18900711 -133636548 + RMER17A LTR ERVK 3 48 -703 5 729 270 0 0 0 chr5 18901084 18901114 -133636145 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 729 200 200 0 0 chr5 18902191 18902236 -133635023 + T-rich Low_complexity Low_complexity 2 46 0 5 729 297 0 0 0 chr5 18902610 18902643 -133634616 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 729 25 31 0 0 chr5 18903784 18903816 -133633443 + AT_rich Low_complexity Low_complexity 1 32 0 5 729 717 293 54 29 chr5 18904891 18905130 -133632129 + RMER1B Other Other 576 820 -246 5 729 799 207 13 7 chr5 18905239 18905390 -133631869 + RMER1C Other Other 803 954 -388 5 729 424 280 8 8 chr5 18905442 18905575 -133631684 - Lx7 LINE L1 -1385 6311 6179 5 729 342 0 0 0 chr5 18905608 18905646 -133631613 + (TTG)n Simple_repeat Simple_repeat 2 39 0 5 729 819 316 65 6 chr5 18906071 18906427 -133630832 - MLT1B LTR MaLR -1 389 13 5 729 228 283 163 0 chr5 18906652 18906744 -133630515 + Lx9 LINE L1 7333 7439 -205 5 729 216 0 0 0 chr5 18906765 18906789 -133630470 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 729 189 0 0 0 chr5 18906790 18906811 -133630448 + (TAG)n Simple_repeat Simple_repeat 3 23 0 5 729 21 0 0 0 chr5 18907389 18907410 -133629849 + AT_rich Low_complexity Low_complexity 1 21 0 5 729 253 237 64 26 chr5 18908624 18908702 -133628557 + Kanga1a DNA Tc2 2 82 -672 5 729 243 343 41 35 chr5 18908993 18909138 -133628121 + Kanga1a DNA Tc2 386 531 -223 5 729 24 0 0 0 chr5 18909247 18909271 -133627988 + AT_rich Low_complexity Low_complexity 1 24 0 5 729 5195 121 18 70 chr5 18909879 18910823 -133626436 - RLTR13D6 LTR ERVK -7 895 1 5 729 355 318 0 0 chr5 18911105 18911212 -133626047 + GA-rich Low_complexity Low_complexity 2 108 0 5 729 25 31 0 0 chr5 18911683 18911715 -133625544 + AT_rich Low_complexity Low_complexity 1 32 0 5 729 26 0 0 0 chr5 18911775 18911801 -133625458 + AT_rich Low_complexity Low_complexity 1 26 0 5 729 36548 56 10 12 chr5 18911801 18917715 -133619544 - L1Md_F2 LINE L1 -1 6565 559 5 729 300 298 66 87 chr5 18917998 18918391 -133618868 + L1MB7 LINE L1 4578 4962 -1184 5 729 668 321 92 47 chr5 18918382 18919000 -133618259 + L1MB7 LINE L1 5519 6164 -20 5 729 560 333 7 0 chr5 18919680 18919827 -133617432 + RSINE1 SINE B4 1 148 -17 5 729 504 48 0 0 chr5 18921085 18921148 -133616111 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 729 531 235 38 8 chr5 18921350 18921483 -133615776 - B1F SINE Alu -1 148 12 5 729 324 307 69 46 chr5 18921355 18921529 -133615730 - ID_B1 SINE B4 -6 218 41 5 729 1558 223 113 22 chr5 18921856 18922315 -133614944 - Lx9 LINE L1 -140 7504 7004 5 729 183 260 0 39 chr5 18922622 18922674 -133614585 - MIRb SINE MIR -135 133 84 5 729 3382 30 0 0 chr5 18923412 18923808 -133613451 - L1Md_T LINE L1 -257 6325 5930 5 729 2123 43 0 0 chr5 18923809 18924067 -133613192 + L1Md_T LINE L1 6325 6582 0 5 729 22 0 0 0 chr5 18924073 18924095 -133613164 + AT_rich Low_complexity Low_complexity 1 22 0 5 729 243 291 35 63 chr5 18924539 18924682 -133612577 + RMER15 LTR ERVL 300 438 -137 5 729 210 341 160 19 chr5 18924839 18925051 -133612208 + MIR SINE MIR 11 252 -10 5 729 24 32 0 0 chr5 18925084 18925115 -133612144 + AT_rich Low_complexity Low_complexity 1 31 0 5 729 23 54 0 0 chr5 18926777 18926814 -133610445 + AT_rich Low_complexity Low_complexity 1 37 0 5 729 384 22 0 0 chr5 18926872 18926917 -133610342 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 729 3782 7 0 0 chr5 18927031 18927455 -133609804 - L1Md_A LINE L1 0 6582 6159 5 729 426 319 71 46 chr5 18928007 18928204 -133609055 + MTEb LTR MaLR 178 379 0 5 729 289 309 21 0 chr5 18928361 18928455 -133608804 + Tigger7 DNA MER2_type 56 151 -2340 5 729 1902 192 146 39 chr5 18929873 18930361 -133606898 - Lx2 LINE L1 -1 6635 6096 5 729 9009 179 35 68 chr5 18930358 18931576 -133605683 - Lx2 LINE L1 -1089 5908 4677 5 729 321 26 0 0 chr5 18931576 18931614 -133605645 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 729 9009 214 32 64 chr5 18931614 18933126 -133604133 - Lx2 LINE L1 -1207 4676 3249 5 729 628 125 0 37 chr5 18933124 18933232 -133604027 + MusHAL1 LINE L1 271 374 -2338 5 729 229 258 16 24 chr5 18933232 18933355 -133603904 + ORR1B1-int LTR MaLR 633 754 -755 5 729 1058 84 0 0 chr5 18933253 18933395 -133603864 + B1_Mus2 SINE Alu 6 147 0 5 729 11386 83 21 8 chr5 18933403 18935090 -133602169 + MusHAL1 LINE L1 376 2084 -628 5 729 2445 267 124 32 chr5 18936821 18937441 -133599818 - Lx6 LINE L1 -26 7434 6759 5 729 407 19 19 0 chr5 18937441 18937493 -133599766 + (TTG)n Simple_repeat Simple_repeat 2 54 0 5 729 2445 255 77 11 chr5 18937493 18937738 -133599521 - Lx6 LINE L1 -702 6758 6275 5 729 415 112 0 0 chr5 18937740 18937807 -133599452 - L1Md_T LINE L1 -11 5869 5808 5 729 400 145 14 0 chr5 18937893 18937962 -133599297 + MTC LTR MaLR 13 82 -339 5 729 502 139 23 0 chr5 18937967 18938053 -133599206 + MTC LTR MaLR 331 418 -1 5 729 4489 215 84 26 chr5 18938053 18939241 -133598018 + MTC-int LTR MaLR 2 1258 0 5 729 1336 183 8 16 chr5 18939241 18939486 -133597773 + MTC LTR MaLR 1 243 -178 5 729 299 200 23 81 chr5 18939501 18939588 -133597671 + MTC LTR MaLR 330 411 -8 5 729 419 152 54 0 chr5 18940562 18940654 -133596605 + L1Md_A LINE L1 6486 6582 0 5 729 251 294 62 79 chr5 18941061 18941238 -133596021 - MIR SINE MIR -80 182 9 5 729 2710 72 3 0 chr5 18941414 18941759 -133595500 - ORR1A1 LTR MaLR 0 346 1 5 729 1104 95 0 0 chr5 18941774 18941921 -133595338 + B1_Mus2 SINE Alu 1 147 0 5 729 390 101 0 0 chr5 18941921 18941990 -133595269 + (A)n Simple_repeat Simple_repeat 1 69 0 6 729 691 296 118 20 chr5 18941993 18942321 -133594938 - MER67D LTR ERV1 -43 471 127 6 729 632 237 15 7 chr5 18943954 18944090 -133593169 - B1_Mur1 SINE Alu -10 139 3 6 729 685 312 130 23 chr5 18944145 18944407 -133592852 + B4 SINE B4 3 292 0 6 729 3164 18 76 0 chr5 18944685 18945067 -133592192 - IAPLTR2a LTR ERVK 0 411 1 6 729 472 281 15 0 chr5 18945132 18945267 -133591992 + B1_Mur2 SINE Alu 2 138 -11 6 729 196 292 14 27 chr5 18946992 18947066 -133590193 + L4 LINE RTE 1315 1387 -642 6 729 326 278 97 32 chr5 18948359 18948452 -133588807 + B1F SINE Alu 2 100 -49 6 729 263 337 79 0 chr5 18948499 18948588 -133588671 + B4 SINE B4 1 96 -196 6 729 259 300 29 20 chr5 18948621 18948723 -133588536 + B4A SINE B4 169 271 -21 6 729 1157 76 0 109 chr5 18949008 18949201 -133588058 - B2_Mm2 SINE B2 -9 186 15 6 729 267 353 31 61 chr5 18950881 18951044 -133586215 - MER5A DNA MER1_type 0 189 32 6 729 3796 106 51 0 chr5 18951457 18952024 -133585235 + L1Md_F2 LINE L1 563 1158 -5458 6 729 23085 79 2 2 chr5 18952036 18955195 -133582064 + L1Md_F2 LINE L1 2428 5586 -297 6 729 7748 63 0 5 chr5 18955195 18956193 -133581066 + L1Md_F2 LINE L1 5587 6579 -3 6 729 21 0 0 0 chr5 18956312 18956333 -133580926 + AT_rich Low_complexity Low_complexity 1 21 0 6 729 1286 178 274 34 chr5 18958643 18959029 -133578230 - Lx9 LINE L1 -184 7460 6982 6 729 3848 41 19 0 chr5 18959062 18959526 -133577733 - L1Md_F2 LINE L1 -21 6561 6089 6 729 929 184 12 0 chr5 18959525 18959688 -133577571 - Lx9 LINE L1 -647 6997 6833 6 729 505 250 3 0 chr5 18959844 18959978 -133577281 + L1MA4A LINE L1 5785 5928 -375 6 729 1212 106 0 0 chr5 18961101 18961280 -133575979 + (TCC)n Simple_repeat Simple_repeat 2 180 0 6 729 342 0 0 0 chr5 18961280 18961318 -133575941 + (TTC)n Simple_repeat Simple_repeat 2 39 0 6 729 992 73 73 0 chr5 18961322 18961459 -133575800 - B1_Mus1 SINE Alu -1 147 1 6 729 1934 261 91 19 chr5 18962038 18962668 -133574591 - Lx8 LINE L1 -7 7466 6792 6 729 831 30 0 0 chr5 18962665 18962764 -133574495 - L1Md_A LINE L1 -565 6017 5919 6 729 4759 18 35 5 chr5 18962764 18963329 -133573930 + L1Md_A LINE L1 6001 6582 0 6 729 669 322 42 22 chr5 18963345 18963751 -133573508 - L1_Mur3 LINE L1 -3707 2173 1760 6 729 259 315 0 0 chr5 18963752 18963863 -133573396 + (TTA)n Simple_repeat Simple_repeat 3 113 0 6 729 378 74 0 0 chr5 18963928 18963982 -133573277 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 6 729 585 0 0 0 chr5 18964609 18964674 -133572585 + (TC)n Simple_repeat Simple_repeat 2 66 0 6 729 367 267 11 0 chr5 18965165 18965255 -133572004 - ID_B1 SINE B4 -5 219 129 6 729 1025 73 7 0 chr5 18966140 18966276 -133570983 + B1_Mm SINE Alu 11 147 0 6 729 189 139 0 0 chr5 18966286 18966329 -133570930 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 729 2369 167 7 7 chr5 18966338 18966742 -133570517 - Lx LINE L1 -236 6418 6015 6 729 830 163 156 6 chr5 18966741 18966914 -133570345 + Lx LINE L1 6426 6624 -30 6 729 728 226 116 27 chr5 18966914 18967134 -133570125 + ORR1A3-int LTR MaLR 407 640 -1323 6 729 207 139 0 0 chr5 18967219 18967255 -133570004 + (A)n Simple_repeat Simple_repeat 1 36 0 6 729 3565 201 42 162 chr5 18968021 18969176 -133568083 - RMER1B Other Other -3 1063 47 6 729 347 0 23 0 chr5 18969294 18969337 -133567922 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 729 315 0 0 0 chr5 18969337 18969371 -133567888 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 729 307 225 11 0 chr5 18969402 18969491 -133567768 + L1MA7 LINE L1 6196 6285 -6 6 729 372 306 75 35 chr5 18970151 18970378 -133566881 + L3b LINE CR1 22 257 -225 6 729 304 370 30 0 chr5 18972263 18972398 -133564861 + MER5A DNA MER1_type 39 177 -12 6 729 745 20 10 0 chr5 18972412 18972513 -133564746 - L1Md_T LINE L1 -1 6581 6480 6 729 197 320 0 0 chr5 18972855 18972905 -133564354 + MIR SINE MIR 213 262 0 6 729 1060 96 0 7 chr5 18973133 18973280 -133563979 + B1_Mus1 SINE Alu 1 146 -2 6 729 283 328 107 46 chr5 18973887 18974018 -133563241 - B4A SINE B4 -72 220 82 6 729 270 360 0 0 chr5 18974040 18974115 -133563144 - B4 SINE B4 -204 88 14 6 729 240 35 0 0 chr5 18974622 18974651 -133562608 + (TATG)n Simple_repeat Simple_repeat 3 31 0 6 729 1038 310 118 64 chr5 18975141 18975291 -133561968 - Lx8 LINE L1 -70 7403 7253 6 729 3043 64 8 2 chr5 18975291 18975685 -133561574 - MTA_Mm LTR MaLR 0 396 1 6 729 1038 310 118 64 chr5 18975685 18976178 -133561081 - Lx8 LINE L1 -221 7252 6725 6 729 223 426 18 9 chr5 18976388 18976497 -133560762 - PB1D10 SINE Alu -7 110 1 6 729 318 309 60 0 chr5 18976874 18976958 -133560301 - 5S rRNA rRNA -31 90 2 6 729 262 345 0 11 chr5 18978060 18978151 -133559108 + GA-rich Low_complexity Low_complexity 1 90 0 6 729 780 32 0 0 chr5 18978323 18978418 -133558841 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 6 729 252 325 103 17 chr5 18979798 18979914 -133557345 - L1ME1 LINE L1 -81 6098 5973 6 729 186 103 0 0 chr5 18980619 18980648 -133556611 + (AGGGGG)n Simple_repeat Simple_repeat 2 30 0 6 729 216 97 0 0 chr5 18980974 18981005 -133556254 + (T)n Simple_repeat Simple_repeat 1 31 0 6 729 1248 310 38 67 chr5 18981431 18982012 -133555247 - Lx5 LINE L1 -8 7042 6479 6 729 474 324 99 39 chr5 18982061 18982344 -133554915 + RMER13A LTR ERVK 4 303 -557 6 729 35302 44 1 3 chr5 18982401 18987628 -133549631 + L1Md_T LINE L1 281 5589 -297 6 729 8369 37 0 0 chr5 18987628 18988624 -133548635 + L1Md_T LINE L1 5590 6585 0 6 729 402 286 133 28 chr5 18988674 18988854 -133548405 + RMER20B LTR ERVK 422 620 -7 6 729 4929 193 58 8 chr5 18989025 18990388 -133546871 - Lx5 LINE L1 -739 6311 4809 6 729 1662 142 24 3 chr5 18990415 18990704 -133546555 - Lx5 LINE L1 -4000 1880 1586 6 729 1135 102 0 0 chr5 18990704 18990861 -133546398 + B2_Mm2 SINE B2 2 158 -37 6 729 180 0 0 0 chr5 18990861 18990881 -133546378 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 729 220 178 0 43 chr5 18992827 18992874 -133544385 + T-rich Low_complexity Low_complexity 1 45 0 6 729 203 125 25 0 chr5 18992899 18992939 -133544320 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 6 729 323 272 164 23 chr5 18992960 18993088 -133544171 + HAL1-3A_ME LINE L1 2284 2429 -429 6 729 584 98 22 0 chr5 18993562 18993654 -133543605 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 6 729 1195 55 7 0 chr5 18995198 18995344 -133541915 + B1_Mm SINE Alu 1 147 0 6 729 8740 118 16 8 chr5 18996134 18997440 -133539819 - Lx3B LINE L1 -8 6965 5650 6 729 402 277 128 9 chr5 18997465 18997691 -133539568 + L1MA4 LINE L1 5678 5930 -370 6 729 276 317 115 24 chr5 18998263 18998428 -133538831 - MIR SINE MIR -42 220 41 6 729 235 179 44 22 chr5 19000246 19000383 -133536876 + (TAGA)n Simple_repeat Simple_repeat 2 141 0 1 729 357 24 0 0 chr5 19000390 19000432 -133536827 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 2 729 1041 92 0 0 chr5 19000503 19000655 -133536604 + L1_Mus2 LINE L1 6401 6552 -14 3 729 245 301 54 14 chr5 19001164 19001238 -133536021 + ID4_ SINE ID 4 80 -3 4 729 342 360 99 26 chr5 19001374 19001565 -133535694 + Tigger5 DNA MER2_type 10 214 -2192 5 729 396 0 0 0 chr5 19001665 19001709 -133535550 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 729 643 336 45 8 chr5 19002682 19002949 -133534310 + B4A SINE B4 1 277 -15 7 729 210 211 70 0 chr5 19002962 19003019 -133534240 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 8 729 1122 75 0 26 chr5 19003438 19003589 -133533670 + B1_Mus1 SINE Alu 2 148 0 9 729 458 16 65 0 chr5 19003916 19003978 -133533281 + L1_Mus1 LINE L1 6500 6565 -2 1 729 23 0 0 0 chr5 19003978 19004001 -133533258 + AT_rich Low_complexity Low_complexity 1 23 0 1 729 26 30 0 0 chr5 19004360 19004393 -133532866 + AT_rich Low_complexity Low_complexity 1 33 0 1 729 276 186 160 8 chr5 19004398 19004517 -133532742 - Lx9 LINE L1 -29 7615 7479 1 729 366 172 39 8 chr5 19004568 19004697 -133532562 + (TA)n Simple_repeat Simple_repeat 2 134 0 1 729 252 0 0 0 chr5 19005020 19005048 -133532211 + (CTG)n Simple_repeat Simple_repeat 2 29 0 1 729 483 155 0 0 chr5 19005046 19005130 -133532129 + CT-rich Low_complexity Low_complexity 5 88 0 1 730 2447 44 3 3 chr5 19007434 19007750 -133529509 + L1Md_F2 LINE L1 5271 5586 -297 1 730 7107 90 11 2 chr5 19007750 19008737 -133528522 + L1Md_F2 LINE L1 5587 6582 0 1 730 209 30 61 0 chr5 19008863 19008896 -133528363 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 730 369 0 0 0 chr5 19010189 19010230 -133527029 + (TTAA)n Simple_repeat Simple_repeat 3 43 0 1 730 198 0 0 0 chr5 19010836 19010858 -133526401 + (CTG)n Simple_repeat Simple_repeat 2 23 0 2 730 25 65 0 0 chr5 19012114 19012160 -133525099 + AT_rich Low_complexity Low_complexity 1 46 0 2 730 21 0 0 0 chr5 19012960 19012981 -133524278 + AT_rich Low_complexity Low_complexity 1 21 0 2 730 25 0 0 0 chr5 19013249 19013274 -133523985 + AT_rich Low_complexity Low_complexity 1 25 0 2 730 21 0 0 0 chr5 19014035 19014056 -133523203 + AT_rich Low_complexity Low_complexity 1 21 0 2 730 406 218 6 6 chr5 19015375 19015532 -133521727 + GA-rich Low_complexity Low_complexity 2 158 0 2 730 770 347 105 40 chr5 19015716 19016383 -133520876 - MER45B DNA Tip100 0 1040 331 2 730 351 165 89 16 chr5 19016401 19016524 -133520735 + (CTATA)n Simple_repeat Simple_repeat 1 132 0 2 730 579 354 82 21 chr5 19016524 19016815 -133520444 - MER45B DNA Tip100 -717 323 15 2 730 191 250 25 100 chr5 19016898 19016978 -133520281 + L2c LINE L2 3293 3366 -21 2 730 489 34 0 0 chr5 19018191 19018250 -133519009 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 730 445 288 57 25 chr5 19018713 19018870 -133518389 - MER5A1 DNA MER1_type -4 162 1 3 730 685 164 108 19 chr5 19019503 19019715 -133517544 - L1_Mur3 LINE L1 -3815 2065 1835 3 730 259 220 0 219 chr5 19019737 19019888 -133517371 + L1_Mur1 LINE L1 2022 2139 -3741 3 730 2294 202 55 8 chr5 19019904 19020548 -133516711 - L1_Mur3 LINE L1 -4048 1832 1154 3 730 355 197 20 74 chr5 19020554 19020702 -133516557 + T-rich Low_complexity Low_complexity 4 143 0 3 730 799 184 0 0 chr5 19020715 19020862 -133516397 - B1_Mur3 SINE Alu -1 148 2 3 730 715 258 36 0 chr5 19020877 19021156 -133516103 - L1_Mur3 LINE L1 -6548 1180 892 3 730 476 237 21 0 chr5 19021230 19021327 -133515932 - U6 snRNA snRNA -6 101 3 3 730 682 301 82 41 chr5 19022839 19023397 -133513862 - L1MA7 LINE L1 -8 6283 5703 3 730 207 0 0 0 chr5 19023441 19023464 -133513795 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 730 1228 94 0 0 chr5 19023570 19023741 -133513518 + L1_Mus1 LINE L1 6397 6567 0 3 730 419 250 0 0 chr5 19023783 19023863 -133513396 + ID4_ SINE ID 2 81 -2 3 730 423 0 0 0 chr5 19023930 19023977 -133513282 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 730 1152 96 0 0 chr5 19025881 19026037 -133511222 + B2_Mm2 SINE B2 1 156 -39 4 730 423 0 0 0 chr5 19026040 19026087 -133511172 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 4 730 311 241 103 8 chr5 19026806 19026923 -133510336 - L1MA5 LINE L1 0 6300 6173 4 730 926 310 58 26 chr5 19027082 19027655 -133509604 - L1MA5 LINE L1 -305 5995 5405 4 730 225 0 0 0 chr5 19028344 19028369 -133508890 + (A)n Simple_repeat Simple_repeat 1 25 0 4 730 228 367 165 44 chr5 19028686 19028934 -133508325 - LTR16A LTR ERVL -51 400 123 4 730 1859 294 129 36 chr5 19030517 19031560 -133505699 + Lx8 LINE L1 6332 7471 -2 4 730 6836 132 22 24 chr5 19032361 19033482 -133503777 - Lx3C LINE L1 -3 6973 5855 4 730 395 186 21 0 chr5 19033502 19033599 -133503660 - Lx3C LINE L1 -21 6955 6857 4 730 11521 124 18 20 chr5 19033598 19035617 -133501642 - L1_Mur1 LINE L1 -34 5852 3838 4 730 423 258 115 50 chr5 19036252 19036391 -133500868 - ID_B1 SINE B4 0 224 77 5 730 441 0 0 0 chr5 19036728 19036777 -133500482 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 730 658 297 81 33 chr5 19036869 19037234 -133500025 + MLT1C LTR MaLR 21 390 0 5 730 681 299 49 19 chr5 19037873 19038078 -133499181 + B3 SINE B2 6 216 0 5 730 3390 129 30 5 chr5 19038313 19038883 -133498376 + Lx2 LINE L1 6060 6643 -354 5 730 1440 99 24 5 chr5 19038883 19039096 -133498163 + Lx2 LINE L1 6775 6991 -6 5 730 254 350 25 0 chr5 19039185 19039265 -133497994 + RSINE1 SINE B4 67 148 -17 5 730 495 107 0 0 chr5 19039295 19039370 -133497889 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 730 7833 116 1 85 chr5 19039858 19041779 -133495480 - L1_Mus1 LINE L1 0 6567 4929 5 730 7987 51 1 4 chr5 19041779 19042765 -133494494 + L1Md_F2 LINE L1 5588 6570 -12 5 730 7833 169 1 168 chr5 19042765 19043816 -133493443 - L1_Mus1 LINE L1 -949 4928 3973 5 730 183 156 0 0 chr5 19045996 19046028 -133491231 + A-rich Low_complexity Low_complexity 1 32 0 5 730 453 62 0 0 chr5 19046922 19046987 -133490272 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 730 355 228 126 13 chr5 19047438 19047589 -133489670 + Lx5 LINE L1 5686 5853 -1197 6 730 1169 68 7 0 chr5 19048071 19048218 -133489041 - B1_Mus1 SINE Alu 0 148 1 6 730 273 57 0 0 chr5 19048263 19048298 -133488961 + (A)n Simple_repeat Simple_repeat 1 35 0 6 730 895 261 0 35 chr5 19048405 19048604 -133488655 - B3 SINE B2 -7 209 18 6 730 2181 145 89 13 chr5 19048613 19049004 -133488255 + MTC LTR MaLR 1 421 0 6 730 219 36 0 0 chr5 19049764 19049792 -133487467 + (A)n Simple_repeat Simple_repeat 1 28 0 6 730 193 284 122 12 chr5 19050154 19050236 -133487023 - MIRb SINE MIR -2 266 176 6 730 181 239 21 21 chr5 19050550 19050597 -133486662 - L2 LINE L2 -2907 512 466 6 730 26 0 0 0 chr5 19050777 19050803 -133486456 + AT_rich Low_complexity Low_complexity 1 26 0 6 730 24 53 0 0 chr5 19054499 19054537 -133482722 + AT_rich Low_complexity Low_complexity 1 38 0 7 730 499 240 4 0 chr5 19054768 19054873 -133482386 - PB1D10 SINE Alu -6 111 6 7 730 244 265 47 84 chr5 19054781 19054888 -133482371 - MT2B2 LTR ERVL -330 254 152 7 730 4343 148 47 42 chr5 19056402 19057291 -133479968 - RMER17A2 LTR ERVK -12 894 1 7 730 461 81 27 0 chr5 19057833 19057907 -133479352 - L1_Mur3 LINE L1 -4357 1523 1448 7 730 243 0 0 0 chr5 19060004 19060031 -133477228 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 7 730 306 125 0 0 chr5 19060049 19060097 -133477162 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 730 464 326 115 33 chr5 19060117 19060387 -133476872 - B4A SINE B4 0 292 1 7 730 21 0 0 0 chr5 19063255 19063276 -133473983 + AT_rich Low_complexity Low_complexity 1 21 0 7 730 547 307 92 7 chr5 19063820 19063961 -133473298 - RSINE1 SINE B4 -3 162 10 7 730 955 312 56 59 chr5 19064212 19064751 -133472508 - Lx8 LINE L1 -504 6969 6433 8 730 934 315 44 28 chr5 19066239 19066601 -133470658 - MLT1B LTR MaLR 0 390 23 8 730 741 335 129 17 chr5 19066923 19067327 -133469932 - MLT1D LTR MaLR -54 451 3 8 730 492 48 0 0 chr5 19067529 19067592 -133469667 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 730 343 355 88 7 chr5 19067645 19067781 -133469478 + RSINE1 SINE B4 2 148 -17 8 730 412 266 128 17 chr5 19068031 19068203 -133469056 + L1MA5 LINE L1 5805 5995 -305 8 730 837 222 215 42 chr5 19068249 19068358 -133468901 - MT2A LTR ERVL -1 532 429 8 730 612 0 0 0 chr5 19068358 19068426 -133468833 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 8 730 837 222 215 42 chr5 19068426 19068768 -133468491 - MT2A LTR ERVL -105 428 3 8 730 1524 279 23 49 chr5 19070222 19070416 -133466843 + MTD LTR MaLR 1 190 -229 8 730 261 0 0 0 chr5 19070416 19070445 -133466814 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 730 1524 279 23 49 chr5 19070445 19070680 -133466579 + MTD LTR MaLR 191 419 0 8 730 28 48 0 0 chr5 19071277 19071319 -133465940 + AT_rich Low_complexity Low_complexity 1 42 0 9 730 2642 198 17 31 chr5 19071325 19071640 -133465619 - Lx2B LINE L1 -81 6919 6607 9 730 4535 152 84 61 chr5 19071640 19072601 -133464658 + RLTR13C1 LTR ERVK 1 983 0 9 730 2642 198 17 31 chr5 19072601 19072826 -133464433 - Lx2B LINE L1 -394 6606 6387 9 730 377 231 164 8 chr5 19073711 19073815 -133463444 + B3A SINE B2 3 124 -74 9 730 504 0 0 0 chr5 19073815 19073871 -133463388 + (TA)n Simple_repeat Simple_repeat 2 57 0 9 730 377 231 164 8 chr5 19073871 19073888 -133463371 + B3A SINE B2 125 142 -56 9 730 366 182 0 0 chr5 19074703 19074769 -133462490 + ID4 SINE ID 2 67 -16 9 730 317 242 90 15 chr5 19074782 19074916 -133462343 - MTD LTR MaLR -14 405 262 9 730 183 271 0 0 chr5 19075866 19075925 -133461334 + (CAT)n Simple_repeat Simple_repeat 2 60 0 9 730 771 329 8 25 chr5 19076198 19076441 -133460818 - Lx5 LINE L1 -90 6960 6722 9 730 226 217 0 21 chr5 19076497 19076544 -133460715 + GA-rich Low_complexity Low_complexity 3 48 0 9 730 543 66 0 0 chr5 19076733 19076809 -133460450 + (GAAA)n Simple_repeat Simple_repeat 4 79 0 1 730 198 0 0 0 chr5 19077007 19077029 -133460230 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1 730 240 260 31 10 chr5 19077054 19077151 -133460108 - Lx8 LINE L1 -18 7455 7357 1 730 912 210 81 10 chr5 19077165 19077362 -133459897 - B3 SINE B2 0 216 6 1 730 288 70 0 0 chr5 19077401 19077444 -133459815 + (T)n Simple_repeat Simple_repeat 1 43 0 1 730 1228 20 7 0 chr5 19077446 19077592 -133459667 - B1_Mm SINE Alu 0 147 1 1 730 1857 317 77 19 chr5 19077702 19078433 -133458826 - Lx8 LINE L1 -488 6985 6213 1 730 211 344 168 7 chr5 19079378 19079538 -133457721 - MIRb SINE MIR -69 199 7 1 730 504 327 37 65 chr5 19079822 19079841 -133457418 - B3 SINE B2 -6 210 194 1 730 1314 182 212 13 chr5 19079841 19080147 -133457112 - ORR1B2 LTR MaLR 0 367 1 1 730 504 327 37 65 chr5 19080147 19080343 -133456916 - B3 SINE B2 -23 193 1 1 730 370 271 65 19 chr5 19080726 19080880 -133456379 + L3 LINE CR1 3605 3765 -724 1 730 660 233 14 0 chr5 19081238 19081384 -133455875 - B1_Mur2 SINE Alu 0 149 2 1 730 313 335 12 31 chr5 19081420 19081675 -133455584 + GA-rich Low_complexity Low_complexity 1 250 0 1 730 384 22 0 0 chr5 19082285 19082330 -133454929 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 730 3079 172 13 2 chr5 19082880 19083432 -133453827 - Lx LINE L1 -1 6653 6096 1 730 3850 115 17 1 chr5 19083432 19084100 -133453159 - L1_Mus4 LINE L1 -730 5906 5250 1 730 623 333 0 0 chr5 19085439 19085604 -133451655 + RSINE1 SINE B4 1 165 0 1 730 30 0 0 0 chr5 19085617 19085647 -133451612 + AT_rich Low_complexity Low_complexity 1 30 0 1 730 612 276 14 0 chr5 19087956 19088101 -133449158 + ID_B1 SINE B4 76 222 -2 1 730 3903 220 95 14 chr5 19088625 19088996 -133448263 + Lx6 LINE L1 6361 6741 -719 1 730 209 33 33 0 chr5 19088996 19089026 -133448233 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 730 3903 220 95 14 chr5 19089026 19089568 -133447691 + Lx6 LINE L1 6742 7347 -113 1 730 629 189 42 159 chr5 19089576 19089633 -133447626 + Lx7 LINE L1 7486 7530 -166 1 730 2122 62 0 25 chr5 19089633 19089912 -133447347 - L1_Mus1 LINE L1 0 6567 6296 1 730 629 189 42 159 chr5 19089912 19090093 -133447166 + Lx7 LINE L1 7531 7696 0 1 730 2352 133 41 0 chr5 19090094 19090484 -133446775 + Lx2 LINE L1 6591 6996 -1 1 730 788 304 25 20 chr5 19090792 19091142 -133446117 + Lx7 LINE L1 5527 5871 -1825 1 730 516 68 0 0 chr5 19091203 19091276 -133445983 + (TGG)n Simple_repeat Simple_repeat 1 73 0 1 730 233 325 78 9 chr5 19092520 19092635 -133444624 + L3 LINE CR1 2770 2892 -1597 1 730 862 285 36 0 chr5 19093339 19093588 -133443671 + Tigger6a DNA MER2_type 41 298 -785 1 730 183 98 81 16 chr5 19093625 19093687 -133443572 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 730 271 278 61 20 chr5 19094254 19094353 -133442906 + MamRep605 Unknown Unknown 641 743 -133 1 730 356 360 53 5 chr5 19094702 19094889 -133442370 + B4A SINE B4 9 204 -88 1 730 23 0 0 0 chr5 19095097 19095120 -133442139 + AT_rich Low_complexity Low_complexity 1 23 0 1 730 526 357 85 23 chr5 19095254 19095641 -133441618 - MLT1E2 LTR MaLR -216 411 1 1 730 34 42 0 0 chr5 19097663 19097711 -133439548 + AT_rich Low_complexity Low_complexity 1 48 0 1 730 180 0 0 0 chr5 19097909 19097929 -133439330 + (CATG)n Simple_repeat Simple_repeat 1 20 0 1 730 341 292 23 117 chr5 19098008 19098136 -133439123 - B4 SINE B4 0 292 177 1 730 310 286 0 0 chr5 19098179 19098249 -133439010 - B4 SINE B4 -208 84 15 1 730 221 222 32 0 chr5 19098423 19098486 -133438773 + GA-rich Low_complexity Low_complexity 1 65 0 1 730 21 82 0 0 chr5 19098691 19098740 -133438519 + AT_rich Low_complexity Low_complexity 1 49 0 1 730 1155 75 0 0 chr5 19099172 19099319 -133437940 - B1_Mm SINE Alu 0 147 1 1 730 677 224 126 0 chr5 19099414 19099588 -133437671 - MTEb LTR MaLR -183 196 1 1 730 1082 82 7 7 chr5 19099858 19100006 -133437253 + B1_Mus1 SINE Alu 1 148 0 1 730 183 100 0 0 chr5 19100006 19100036 -133437223 + (A)n Simple_repeat Simple_repeat 1 30 0 1 730 21 0 0 0 chr5 19100065 19100086 -133437173 + AT_rich Low_complexity Low_complexity 1 21 0 1 730 3135 228 70 20 chr5 19101142 19101980 -133435279 - ORR1B1-int LTR MaLR -384 1125 246 1 730 565 143 10 0 chr5 19101981 19102079 -133435180 - ORR1B1-int LTR MaLR -1836 127 29 1 730 1677 142 212 9 chr5 19102096 19102422 -133434837 - ORR1B1 LTR MaLR 0 394 3 1 730 229 214 0 0 chr5 19103127 19103169 -133434090 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 1 730 398 20 20 0 chr5 19103304 19103355 -133433904 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 730 213 338 68 0 chr5 19103547 19103621 -133433638 + MIRm SINE MIR 103 181 -95 1 730 717 292 126 37 chr5 19103670 19103940 -133433319 + Tigger7 DNA MER2_type 30 323 -2168 1 730 225 121 16 65 chr5 19104664 19104726 -133432533 + GA-rich Low_complexity Low_complexity 2 60 0 1 730 185 154 26 0 chr5 19105206 19105245 -133432014 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1 730 513 298 140 81 chr5 19105885 19106206 -133431053 + MER58B DNA MER1_type 2 341 0 1 730 229 333 58 36 chr5 19108407 19108544 -133428715 - B1F SINE Alu 0 149 10 1 730 1852 262 28 36 chr5 19108938 19109469 -133427790 - RLTR20C LTR ERVK -7 527 1 1 730 2341 89 30 3 chr5 19109605 19109943 -133427316 + Lx3_Mus LINE L1 6651 6997 -12 1 730 400 271 114 26 chr5 19110046 19110549 -133426710 + L1MB7 LINE L1 2878 3417 -2729 1 730 1348 293 96 20 chr5 19110576 19111277 -133425982 + L1MB7 LINE L1 5268 6021 -163 1 730 1838 280 82 23 chr5 19114475 19115202 -133422057 - Lx5 LINE L1 0 7050 6374 1 730 859 150 12 0 chr5 19116455 19116628 -133420631 + (TA)n Simple_repeat Simple_repeat 1 175 0 1 730 703 355 46 21 chr5 19118936 19119261 -133417998 + Tigger8 DNA MER2_type 119 451 -215 1 730 1372 298 78 27 chr5 19119909 19120458 -133416801 + Lx7 LINE L1 6755 7331 -365 1 730 349 127 0 25 chr5 19120534 19120615 -133416644 + GA-rich Low_complexity Low_complexity 2 80 0 1 730 622 273 76 57 chr5 19120996 19121206 -133416053 + ID_B1 SINE B4 11 224 0 1 730 323 202 11 0 chr5 19121872 19121961 -133415298 + (TA)n Simple_repeat Simple_repeat 1 90 0 1 730 853 81 0 0 chr5 19122389 19122500 -133414759 - Lx3_Mus LINE L1 -580 6429 6319 1 730 11024 81 47 91 chr5 19122501 19123715 -133413544 - RLTR22_Mur LTR ERVK 0 1848 732 1 730 234 0 0 0 chr5 19123715 19123741 -133413518 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 730 11024 81 47 91 chr5 19123741 19124189 -133413070 - RLTR22_Mur LTR ERVK -1117 731 307 1 730 810 42 0 48 chr5 19124189 19124315 -133412944 - L1Md_F2 LINE L1 -8 6574 6455 1 730 11024 81 47 91 chr5 19124315 19124584 -133412675 - RLTR22_Mur LTR ERVK -1542 306 3 1 730 4085 93 31 18 chr5 19124586 19125202 -133412057 - Lx3_Mus LINE L1 -688 6321 5698 1 730 3880 107 9 10 chr5 19125202 19125763 -133411496 + Lx3A LINE L1 6406 6966 -15 1 730 243 61 0 0 chr5 19125763 19125796 -133411463 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 730 3880 107 9 10 chr5 19125796 19125809 -133411450 + Lx3A LINE L1 6967 6979 -2 1 730 695 267 116 41 chr5 19125987 19126307 -133410952 + RLTR15 LTR ERVK 1 344 -15 1 730 841 315 55 18 chr5 19127085 19127341 -133409918 + B4A SINE B4 3 269 -23 1 730 375 23 0 0 chr5 19127341 19127385 -133409874 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 730 841 315 55 18 chr5 19127385 19127403 -133409856 + B4A SINE B4 270 287 -5 1 730 390 42 0 0 chr5 19128024 19128072 -133409187 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 730 1043 45 0 22 chr5 19128240 19128377 -133408882 + B1_Mm SINE Alu 14 147 0 1 730 180 80 19 74 chr5 19128408 19128462 -133408797 + A-rich Low_complexity Low_complexity 2 52 0 1 730 283 260 109 110 chr5 19128462 19128640 -133408619 + MTE2a LTR MaLR 195 379 0 1 730 226 237 21 0 chr5 19131532 19131629 -133405630 + (CA)n Simple_repeat Simple_repeat 1 99 0 1 730 363 216 6 50 chr5 19131674 19131854 -133405405 + GA-rich Low_complexity Low_complexity 5 176 0 1 730 4944 119 16 21 chr5 19132807 19133620 -133403639 + RMER17D2 LTR ERVK 1 809 0 1 730 240 304 21 21 chr5 19135034 19135128 -133402131 + GA-rich Low_complexity Low_complexity 6 99 0 1 730 266 315 109 51 chr5 19135150 19135287 -133401972 - ORR1E LTR MaLR -214 145 1 1 730 235 296 128 43 chr5 19135476 19135617 -133401642 - MER90 LTR ERV1 0 614 462 1 730 428 33 0 16 chr5 19135623 19135684 -133401575 + B1_Mm SINE Alu 88 147 0 1 730 198 0 0 0 chr5 19135684 19135706 -133401553 + (A)n Simple_repeat Simple_repeat 1 22 0 1 730 412 298 58 16 chr5 19135828 19136019 -133401240 - MER90 LTR ERV1 -301 274 76 1 731 315 268 113 128 chr5 19136595 19136860 -133400399 - RLTR9A LTR ERVK -32 336 76 1 731 1111 59 0 0 chr5 19137171 19137306 -133399953 - B1_Mm SINE Alu -12 135 1 1 731 3552 150 29 16 chr5 19137331 19137953 -133399306 - RMER16-int LTR ERVK -3838 1568 939 1 731 9790 22 0 0 chr5 19137960 19139771 -133397488 - L1Md_T LINE L1 0 6582 4772 1 731 2547 162 124 63 chr5 19139771 19140424 -133396835 - RMER16-int LTR ERVK -4450 956 263 1 731 1257 90 0 0 chr5 19140424 19140601 -133396658 + (TTCTC)n Simple_repeat Simple_repeat 1 177 0 1 731 186 167 0 0 chr5 19140609 19140645 -133396614 + CT-rich Low_complexity Low_complexity 1 36 0 1 731 418 265 162 77 chr5 19140990 19141329 -133395930 - RLTR9A LTR ERVK 0 368 1 1 731 9060 99 24 9 chr5 19141329 19143069 -133394190 + Lx3A LINE L1 5230 6981 0 1 731 22 35 0 0 chr5 19143069 19143098 -133394161 + AT_rich Low_complexity Low_complexity 1 29 0 1 731 186 0 28 56 chr5 19143143 19143179 -133394080 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 731 481 15 0 29 chr5 19143179 19143247 -133394012 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 1 731 1083 214 243 18 chr5 19145738 19146080 -133391179 + MTC LTR MaLR 3 421 0 1 731 295 209 184 79 chr5 19146938 19146988 -133390271 - MLT1B LTR MaLR -42 348 296 1 731 3330 38 2 5 chr5 19146988 19147385 -133389874 - MTA_Mm LTR MaLR 0 396 1 1 731 439 290 74 56 chr5 19147385 19147648 -133389611 - MLT1B LTR MaLR -95 295 1 1 731 27 62 0 0 chr5 19147660 19147708 -133389551 + AT_rich Low_complexity Low_complexity 1 48 0 1 731 536 298 42 58 chr5 19148183 19148372 -133388887 - B3A SINE B2 -4 194 9 1 731 1520 216 20 79 chr5 19148619 19148941 -133388318 - Lx5 LINE L1 -4 7046 6726 1 731 4285 191 26 83 chr5 19148941 19149902 -133387357 - RMER13B LTR ERVK 0 908 3 1 731 1520 216 20 79 chr5 19149902 19149972 -133387287 - Lx5 LINE L1 -325 6725 6677 1 731 16325 166 86 44 chr5 19149970 19152971 -133384288 - L1_Mur2 LINE L1 -675 5202 2056 2 731 369 0 0 0 chr5 19152971 19153012 -133384247 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 731 16325 166 86 44 chr5 19153012 19153814 -133383445 - L1_Mur2 LINE L1 -3822 2055 1240 2 731 529 347 89 50 chr5 19154055 19154516 -133382743 - L1M5 LINE L1 -358 5806 5328 2 731 936 160 6 0 chr5 19154591 19154747 -133382512 + URR1A DNA MER1_type 35 191 -35 2 731 498 349 0 0 chr5 19154763 19154892 -133382367 - RSINE1 SINE B4 -36 129 1 2 731 36322 52 12 4 chr5 19154948 19160423 -133376836 + L1Md_T LINE L1 104 5586 -297 2 731 8001 56 0 0 chr5 19160423 19161462 -133375797 + L1Md_T LINE L1 5587 6582 0 2 731 32 26 0 0 chr5 19161695 19161734 -133375525 + AT_rich Low_complexity Low_complexity 1 39 0 2 731 21 36 0 0 chr5 19162539 19162567 -133374692 + AT_rich Low_complexity Low_complexity 1 28 0 2 731 318 325 92 82 chr5 19162647 19163157 -133374102 + L1MC5 LINE L1 7054 7568 -393 2 731 8271 40 1 0 chr5 19163162 19164298 -133372961 - L1Md_F2 LINE L1 -3 6579 5442 2 731 450 66 0 0 chr5 19164370 19164431 -133372828 + L1_Mm LINE L1 4090 4150 -1733 2 731 331 186 10 10 chr5 19164608 19164711 -133372548 + (CA)n Simple_repeat Simple_repeat 1 103 0 2 731 1533 274 21 67 chr5 19164711 19165341 -133371918 - Lx9 LINE L1 -128 7516 6916 2 731 297 0 0 0 chr5 19165481 19165514 -133371745 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 731 472 321 38 6 chr5 19165536 19165693 -133371566 + Lx9 LINE L1 6342 6503 -1141 2 731 412 238 137 16 chr5 19166516 19166640 -133370619 + B1F SINE Alu 2 140 -9 2 731 292 94 0 36 chr5 19166660 19166715 -133370544 + (GGA)n Simple_repeat Simple_repeat 2 54 0 2 731 657 0 0 0 chr5 19167151 19167224 -133370035 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 2 731 22 56 0 0 chr5 19167708 19167744 -133369515 + AT_rich Low_complexity Low_complexity 1 36 0 2 731 282 319 18 18 chr5 19168942 19169111 -133368148 + L1_Mur3 LINE L1 3008 3176 -2704 2 731 276 204 37 0 chr5 19169114 19169168 -133368091 - B1F1 SINE Alu -85 64 9 2 731 303 0 64 0 chr5 19171020 19171067 -133366192 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 731 277 369 116 5 chr5 19173220 19173427 -133363832 + Tigger16b DNA Tigger 105 334 -3 2 731 182 271 0 40 chr5 19174513 19174563 -133362696 + MIRb SINE MIR 185 232 -36 2 731 23 33 0 0 chr5 19175639 19175669 -133361590 + AT_rich Low_complexity Low_complexity 1 30 0 2 731 323 388 37 27 chr5 19175894 19176082 -133361177 + MLT1A LTR MaLR 178 367 -7 2 731 2398 96 56 33 chr5 19176354 19176744 -133360515 - Lx LINE L1 0 6654 6256 2 731 3757 252 68 34 chr5 19177127 19177288 -133359971 - Lx6 LINE L1 -5 7455 7297 2 731 672 13 0 0 chr5 19177288 19177365 -133359894 + (AATAG)n Simple_repeat Simple_repeat 4 80 0 2 731 3757 252 68 34 chr5 19177365 19178192 -133359067 - Lx6 LINE L1 -164 7296 6435 2 731 242 141 40 40 chr5 19179279 19179353 -133357906 + (TA)n Simple_repeat Simple_repeat 1 74 0 2 731 291 28 0 0 chr5 19179612 19179648 -133357611 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 731 782 302 142 3 chr5 19180640 19180972 -133356287 + MTD LTR MaLR 42 419 0 2 731 4733 134 26 9 chr5 19181468 19182263 -133354996 - RMER17D2 LTR ERVK 0 809 1 2 731 236 143 52 0 chr5 19182305 19182382 -133354877 - MT2A LTR ERVL 0 533 453 2 731 2167 187 53 13 chr5 19182421 19182817 -133354442 - MTC LTR MaLR -1 420 9 2 731 195 42 0 0 chr5 19182817 19182841 -133354418 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 731 180 0 0 0 chr5 19182841 19182860 -133354399 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 731 30 83 0 0 chr5 19182863 19182935 -133354324 + AT_rich Low_complexity Low_complexity 1 72 0 2 731 501 17 0 0 chr5 19182938 19182996 -133354263 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 731 859 270 67 11 chr5 19182996 19183319 -133353940 - MT2A LTR ERVL -91 510 1 2 731 235 312 107 71 chr5 19183390 19183559 -133353700 - B2_Mm2 SINE B2 -3 192 18 2 731 325 289 39 0 chr5 19183992 19184120 -133353139 + L1MB2 LINE L1 5859 5991 -180 2 731 270 151 41 0 chr5 19188136 19188209 -133349050 + CT-rich Low_complexity Low_complexity 1 76 0 2 731 23 0 0 0 chr5 19192663 19192686 -133344573 + AT_rich Low_complexity Low_complexity 1 23 0 2 731 3404 183 58 16 chr5 19193744 19194432 -133342827 + RMER6D LTR ERVK 2 718 -2 2 731 30 45 0 0 chr5 19195785 19195829 -133341430 + AT_rich Low_complexity Low_complexity 1 44 0 2 731 3570 231 19 17 chr5 19196591 19197339 -133339920 - Lx5 LINE L1 -1 7049 6301 2 731 364 212 35 23 chr5 19197340 19197427 -133339832 - ORR1D2 LTR MaLR -281 89 2 2 731 2740 256 60 99 chr5 19197429 19197580 -133339679 - ORR1D2-int LTR MaLR 0 1370 1194 2 731 216 0 0 0 chr5 19197580 19197604 -133339655 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 731 2740 256 60 99 chr5 19197604 19198046 -133339213 - ORR1D2-int LTR MaLR -177 1193 783 2 731 823 179 0 21 chr5 19198046 19198189 -133339070 + B1_Mur3 SINE Alu 3 142 -7 2 731 2740 256 60 99 chr5 19198189 19198575 -133338684 - ORR1D2-int LTR MaLR -588 782 429 2 731 227 136 0 17 chr5 19198658 19198718 -133338541 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 2 731 815 40 0 0 chr5 19198722 19198823 -133338436 - B1_Mm SINE Alu 0 147 47 2 731 257 261 14 68 chr5 19198780 19198854 -133338405 - 4.5SRNA scRNA scRNA -8 86 17 2 731 1998 310 114 28 chr5 19199158 19200214 -133337045 - Lx8 LINE L1 0 7473 6328 2 731 600 53 0 0 chr5 19200551 19200627 -133336632 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2 731 659 330 32 56 chr5 19200767 19201268 -133335991 + L1MA5A LINE L1 5387 5875 -422 2 731 1057 62 0 46 chr5 19201288 19201440 -133335819 + B1_Mus1 SINE Alu 4 148 0 2 731 44 0 0 0 chr5 19201551 19201595 -133335664 + AT_rich Low_complexity Low_complexity 1 44 0 2 731 441 0 0 0 chr5 19201666 19201715 -133335544 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 731 1480 245 114 100 chr5 19201727 19201908 -133335351 - Lx9 LINE L1 -174 7470 7276 2 731 229 163 0 23 chr5 19201908 19201952 -133335307 + MT2B LTR ERVL 364 406 -195 2 731 1480 245 114 100 chr5 19201952 19202404 -133334855 - Lx9 LINE L1 -174 7275 6785 2 731 230 108 45 15 chr5 19202649 19202715 -133334544 + (TTATA)n Simple_repeat Simple_repeat 5 72 0 2 731 26 64 0 0 chr5 19202727 19202774 -133334485 + AT_rich Low_complexity Low_complexity 1 47 0 2 731 251 390 50 60 chr5 19202789 19203007 -133334252 - MER20 DNA MER1_type 0 219 4 2 731 5496 105 20 7 chr5 19203493 19204308 -133332951 - Lx3C LINE L1 -7 6969 6145 2 731 250 102 41 0 chr5 19204308 19204357 -133332902 + Lx3C LINE L1 6099 6149 -827 2 731 2301 205 36 14 chr5 19206572 19207067 -133330192 - RLTR11A2 LTR ERVK -21 506 1 2 731 32 0 0 0 chr5 19207088 19207120 -133330139 + AT_rich Low_complexity Low_complexity 1 32 0 2 731 1037 176 97 17 chr5 19209559 19209796 -133327463 - L1_Mur3 LINE L1 -1176 4704 4449 2 731 418 33 16 16 chr5 19210235 19210296 -133326963 + (TTA)n Simple_repeat Simple_repeat 2 62 0 2 731 263 351 23 28 chr5 19211000 19211176 -133326083 + L1MEd LINE L1 1018 1192 -4927 2 731 4458 73 8 10 chr5 19211438 19212050 -133325209 + L1Md_F2 LINE L1 5958 6568 -14 2 731 26 30 0 0 chr5 19212050 19212083 -133325176 + AT_rich Low_complexity Low_complexity 1 33 0 2 731 24 32 0 0 chr5 19212513 19212544 -133324715 + AT_rich Low_complexity Low_complexity 1 31 0 2 731 289 340 113 0 chr5 19212653 19212803 -133324456 - MIR SINE MIR -16 246 80 2 731 315 312 43 11 chr5 19213404 19213498 -133323761 - B1F SINE Alu -52 97 1 2 731 248 356 28 28 chr5 19213498 19213511 -133323748 - ID_B1 SINE B4 -49 175 69 2 731 251 257 111 163 chr5 19213644 19213816 -133323443 + RSINE1 SINE B4 3 165 0 2 731 1125 299 59 26 chr5 19213986 19214645 -133322614 - L1MC LINE L1 -3110 3036 2356 2 731 279 0 0 0 chr5 19215151 19215182 -133322077 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 731 2526 99 15 18 chr5 19215295 19215685 -133321574 - Lx2 LINE L1 -4 6993 6605 2 731 489 88 0 0 chr5 19215705 19215785 -133321474 + (A)n Simple_repeat Simple_repeat 1 80 0 2 731 3008 161 58 14 chr5 19215795 19216345 -133320914 - RMER4B LTR ERVK -11 574 1 2 731 457 259 8 74 chr5 19216618 19216739 -133320520 + B4A SINE B4 178 290 -2 2 731 180 111 0 0 chr5 19216762 19216789 -133320470 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 731 367 325 16 8 chr5 19217199 19217326 -133319933 + B1F SINE Alu 2 129 -20 2 731 628 158 17 17 chr5 19217426 19217542 -133319717 + PB1D9 SINE Alu 4 119 -1 2 731 231 203 28 42 chr5 19218700 19218772 -133318487 + (TATATG)n Simple_repeat Simple_repeat 3 73 0 2 731 1185 62 0 0 chr5 19219257 19219403 -133317856 + B1_Mm SINE Alu 1 146 -1 2 731 27 0 0 0 chr5 19219403 19219430 -133317829 + AT_rich Low_complexity Low_complexity 1 27 0 2 731 3359 58 30 0 chr5 19219444 19219873 -133317386 + L1_Mus1 LINE L1 6126 6567 0 2 731 186 43 0 0 chr5 19220416 19220439 -133316820 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 731 511 283 33 57 chr5 19221292 19221502 -133315757 + Lx7 LINE L1 7156 7360 -336 2 731 1578 11 0 0 chr5 19221536 19221716 -133315543 + (TCC)n Simple_repeat Simple_repeat 1 180 0 2 731 210 171 0 0 chr5 19221716 19221757 -133315502 + (TTG)n Simple_repeat Simple_repeat 1 41 0 2 731 277 281 125 48 chr5 19222265 19222433 -133314826 + MIRb SINE MIR 88 268 0 2 731 21 0 0 0 chr5 19222906 19222927 -133314332 + AT_rich Low_complexity Low_complexity 1 21 0 2 731 3986 113 59 52 chr5 19223808 19224209 -133313050 - RMER17A LTR ERVK 0 751 315 2 731 745 71 18 0 chr5 19224209 19224322 -133312937 + (GGAGA)n Simple_repeat Simple_repeat 2 116 0 2 731 3986 113 59 52 chr5 19224322 19224666 -133312593 - RMER17A LTR ERVK -437 314 1 2 731 451 298 8 8 chr5 19225301 19225426 -133311833 + PB1 SINE Alu 1 125 -2 2 731 215 322 119 14 chr5 19225919 19226062 -133311197 + MIR SINE MIR 21 168 -94 2 731 232 237 0 63 chr5 19226100 19226163 -133311096 - ID4 SINE ID -9 74 16 3 731 24 32 0 0 chr5 19227363 19227394 -133309865 + AT_rich Low_complexity Low_complexity 1 31 0 3 731 261 0 0 0 chr5 19227622 19227651 -133309608 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 731 1648 224 30 69 chr5 19228034 19228096 -133309163 + MTD LTR MaLR 1 60 -359 3 731 3234 48 2 5 chr5 19228096 19228493 -133308766 - MTA_Mm LTR MaLR 0 396 1 3 731 1648 224 30 69 chr5 19228493 19228866 -133308393 + MTD LTR MaLR 61 419 0 3 731 784 265 75 23 chr5 19229773 19229947 -133307312 - ETnERV2-int LTR ERVK -204 7202 7020 3 731 2940 26 9 0 chr5 19230223 19230566 -133306693 - ORR1A0 LTR MaLR 0 346 1 3 731 21 0 0 0 chr5 19231335 19231356 -133305903 + AT_rich Low_complexity Low_complexity 1 21 0 3 731 189 0 0 0 chr5 19231417 19231438 -133305821 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 3 731 326 80 20 0 chr5 19231436 19231486 -133305773 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 3 731 437 238 0 0 chr5 19232341 19232425 -133304834 + B4 SINE B4 1 84 -208 3 731 591 133 157 17 chr5 19232439 19232554 -133304705 + B3 SINE B2 5 135 -81 3 731 213 39 0 0 chr5 19232595 19232621 -133304638 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 3 731 751 218 0 26 chr5 19232625 19232776 -133304483 + B1_Mus1 SINE Alu 2 148 0 3 731 377 278 30 111 chr5 19232782 19233023 -133304236 + RSINE1 SINE B4 82 292 0 3 731 198 224 0 0 chr5 19233023 19233072 -133304187 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 731 855 254 135 37 chr5 19234293 19234620 -133302639 + MTEb LTR MaLR 13 371 -8 3 731 700 267 16 36 chr5 19235515 19235709 -133301550 - B3 SINE B2 0 216 27 3 731 33925 74 11 4 chr5 19235731 19241797 -133295462 - L1Md_F2 LINE L1 -12 6570 467 3 731 536 335 16 60 chr5 19242332 19242516 -133294743 + B4A SINE B4 116 291 -1 3 731 354 80 0 0 chr5 19244244 19244294 -133292965 + (CCTA)n Simple_repeat Simple_repeat 1 50 0 3 731 8153 83 2 30 chr5 19244422 19245620 -133291639 + L1_Mur1 LINE L1 3280 4444 -1442 3 731 1872 285 38 121 chr5 19246963 19247854 -133289405 - Lx5 LINE L1 -18 7032 6216 3 731 3158 171 29 0 chr5 19247850 19248411 -133288848 - L1_Mur2 LINE L1 -184 5693 5117 3 731 1324 154 35 92 chr5 19248408 19248723 -133288536 - L1_Mur2 LINE L1 -1562 4315 4019 3 731 3676 32 16 0 chr5 19248822 19249263 -133287996 + L1Md_T LINE L1 6135 6582 0 3 731 543 234 102 31 chr5 19249530 19249658 -133287601 + B1_Mur1 SINE Alu 3 139 -10 3 731 522 0 0 0 chr5 19249658 19249716 -133287543 + (TAA)n Simple_repeat Simple_repeat 2 59 0 3 731 192 355 78 21 chr5 19250708 19250849 -133286410 - MIRc SINE MIR -24 244 96 3 731 240 182 0 22 chr5 19252077 19252122 -133285137 + ID4_ SINE ID 28 71 -12 3 731 228 241 0 53 chr5 19252122 19252134 -133285125 + ID SINE ID 29 82 -142 3 731 22 56 0 0 chr5 19252165 19252201 -133285058 + AT_rich Low_complexity Low_complexity 1 36 0 3 731 420 20 0 0 chr5 19252206 19252255 -133285004 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 731 939 35 0 0 chr5 19252255 19252369 -133284890 + (TG)n Simple_repeat Simple_repeat 2 116 0 3 731 182 62 31 0 chr5 19252574 19252606 -133284653 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 731 207 0 0 0 chr5 19254359 19254382 -133282877 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 731 345 324 74 20 chr5 19254729 19255184 -133282075 - L1MC4a LINE L1 -516 7366 6878 3 731 282 193 0 0 chr5 19256281 19256338 -133280921 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 731 207 0 0 0 chr5 19256340 19256363 -133280896 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 731 414 0 0 0 chr5 19257225 19257271 -133279988 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 731 366 214 0 0 chr5 19257559 19257648 -133279611 + GA-rich Low_complexity Low_complexity 1 89 0 3 731 315 0 0 0 chr5 19257668 19257703 -133279556 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 731 317 356 66 13 chr5 19258110 19258261 -133278998 - RSINE1 SINE B4 -5 160 2 3 731 620 330 129 33 chr5 19259533 19259991 -133277268 + MLT1D LTR MaLR 1 502 -3 3 731 24 103 0 0 chr5 19261196 19261283 -133275976 + AT_rich Low_complexity Low_complexity 1 87 0 3 731 366 143 0 77 chr5 19261602 19261693 -133275566 + L1_Mus1 LINE L1 6481 6564 -3 3 731 3025 104 11 7 chr5 19261804 19262248 -133275011 + L1_Mus3 LINE L1 6189 6634 -4 3 731 632 294 96 53 chr5 19262583 19262791 -133274468 - ID_B1 SINE B4 0 224 8 3 731 245 53 0 50 chr5 19263234 19263274 -133273985 + (CCCTAA)n Simple_repeat Simple_repeat 4 41 0 3 731 440 278 11 51 chr5 19263495 19263673 -133273586 + L1MA8 LINE L1 5917 6087 -204 3 731 465 280 29 29 chr5 19263679 19263815 -133273444 - B1F1 SINE Alu 0 149 14 3 731 335 218 123 27 chr5 19263817 19263963 -133273296 + L1MA8 LINE L1 6108 6267 -24 3 731 1034 134 204 0 chr5 19264181 19264367 -133272892 - URR1B DNA MER1_type -1 224 1 3 731 22 0 0 0 chr5 19265039 19265061 -133272198 + AT_rich Low_complexity Low_complexity 1 22 0 3 731 246 246 0 0 chr5 19265582 19265643 -133271616 + T-rich Low_complexity Low_complexity 1 61 0 3 731 245 269 82 51 chr5 19265643 19265741 -133271518 - B1F SINE Alu 0 149 49 3 731 961 70 8 0 chr5 19266011 19266140 -133271119 + B1_Mm SINE Alu 11 140 -7 3 731 798 41 0 0 chr5 19266140 19266238 -133271021 + (GAGAA)n Simple_repeat Simple_repeat 4 101 0 3 731 287 335 33 71 chr5 19266615 19266827 -133270432 + MamRep434 DNA TcMar 109 312 -114 3 731 22 0 0 0 chr5 19266883 19266905 -133270354 + AT_rich Low_complexity Low_complexity 1 22 0 3 732 25 31 0 0 chr5 19267847 19267879 -133269380 + AT_rich Low_complexity Low_complexity 1 32 0 3 732 811 305 14 9 chr5 19268292 19268507 -133268752 - ID_B1 SINE B4 -8 216 1 3 732 503 325 123 67 chr5 19268849 19269238 -133268021 + MER21B LTR ERV1 332 742 -121 3 732 324 0 0 0 chr5 19269435 19269471 -133267788 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 732 417 141 0 0 chr5 19269496 19269567 -133267692 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 732 2814 276 98 16 chr5 19269567 19270452 -133266807 - Lx8 LINE L1 -176 7297 6340 3 732 201 74 0 0 chr5 19271245 19271272 -133265987 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 3 732 797 237 108 118 chr5 19271495 19271782 -133265477 + B4 SINE B4 9 292 0 3 732 7237 107 39 49 chr5 19272046 19273273 -133263986 - Lx2A LINE L1 -1 7007 5793 3 732 180 343 108 0 chr5 19273309 19273411 -133263848 - MIRb SINE MIR -113 155 43 3 732 315 328 17 8 chr5 19274404 19274521 -133262738 + PB1D7 SINE Alu 1 118 -2 3 732 280 293 20 10 chr5 19275521 19275621 -133261638 + MTEb LTR MaLR 275 375 -4 3 732 396 205 26 18 chr5 19275982 19276096 -133261163 - Lx9 LINE L1 -4 7640 7526 3 732 5216 107 7 9 chr5 19277598 19278372 -133258887 - Lx3A LINE L1 0 6981 6210 3 732 2259 93 52 3 chr5 19278372 19278716 -133258543 + Lx3A LINE L1 4992 5352 -534 3 732 3930 88 16 6 chr5 19278713 19279255 -133258004 + Lx3A LINE L1 5496 6042 -939 3 732 189 0 0 0 chr5 19279255 19279276 -133257983 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 3 732 3930 91 37 22 chr5 19279276 19279424 -133257835 + Lx3A LINE L1 6043 6191 -790 3 732 274 240 40 0 chr5 19279612 19279687 -133257572 + GA-rich Low_complexity Low_complexity 3 80 0 3 732 232 228 0 0 chr5 19279795 19279852 -133257407 + GA-rich Low_complexity Low_complexity 1 57 0 3 732 1812 146 174 14 chr5 19280286 19280647 -133256612 - MTC LTR MaLR 0 421 3 3 732 26 30 0 0 chr5 19280648 19280681 -133256578 + AT_rich Low_complexity Low_complexity 1 33 0 3 732 742 261 36 0 chr5 19281042 19281237 -133256022 + B3 SINE B2 1 202 -14 3 732 215 293 0 0 chr5 19281761 19281819 -133255440 - L2c LINE L2 -309 3078 3021 3 732 197 305 49 0 chr5 19281814 19281896 -133255363 - MIR SINE MIR -3 259 174 3 732 1540 0 0 11 chr5 19282269 19282451 -133254808 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 732 222 250 38 0 chr5 19283525 19283605 -133253654 + (TCTG)n Simple_repeat Simple_repeat 2 84 0 3 732 281 133 19 58 chr5 19283629 19283733 -133253526 + (TCTCTG)n Simple_repeat Simple_repeat 3 102 0 3 732 403 297 101 18 chr5 19283986 19284154 -133253105 + Arthur1B DNA Tip100 19 200 -1025 3 732 27 29 0 0 chr5 19286240 19286274 -133250985 + AT_rich Low_complexity Low_complexity 1 34 0 3 732 31 26 0 0 chr5 19286332 19286370 -133250889 + AT_rich Low_complexity Low_complexity 1 38 0 3 732 1641 264 22 15 chr5 19286403 19286814 -133250445 - Lx6 LINE L1 -30 7430 7017 3 732 192 323 86 0 chr5 19287163 19287256 -133250003 + MER5B DNA MER1_type 74 174 -4 3 732 23 68 0 0 chr5 19287277 19287321 -133249938 + AT_rich Low_complexity Low_complexity 1 44 0 3 732 220 27 54 0 chr5 19287393 19287430 -133249829 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 732 671 192 8 46 chr5 19287433 19287564 -133249695 - B1_Mus2 SINE Alu -13 134 9 3 732 318 106 0 0 chr5 19290555 19290602 -133246657 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 3 732 588 325 74 70 chr5 19290902 19291259 -133246000 + MTEb LTR MaLR 1 361 -18 3 732 425 283 77 18 chr5 19291375 19291544 -133245715 - MER5A DNA MER1_type -8 181 3 3 732 426 127 0 0 chr5 19292177 19292248 -133245011 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 732 562 252 24 0 chr5 19295034 19295157 -133242102 - B1_Mur1 SINE Alu -6 143 18 3 732 3161 140 72 13 chr5 19295231 19295918 -133241341 - Lx5 LINE L1 -848 6202 5469 3 732 334 252 20 20 chr5 19296056 19296202 -133241057 + L1MC3 LINE L1 6904 7049 -736 3 732 595 266 39 0 chr5 19296208 19296336 -133240923 + B3A SINE B2 8 140 -58 3 732 441 54 0 0 chr5 19296384 19296440 -133240819 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 732 251 280 111 22 chr5 19296519 19296654 -133240605 + L1MC3 LINE L1 7138 7284 -501 3 732 2899 193 32 13 chr5 19296699 19297318 -133239941 - Lx9 LINE L1 -163 7481 6851 4 732 428 148 37 0 chr5 19297480 19297561 -133239698 - RMER6C LTR ERVK 0 690 607 4 732 605 180 8 0 chr5 19297565 19297693 -133239566 + CT-rich Low_complexity Low_complexity 1 129 0 4 732 977 89 0 27 chr5 19297707 19297857 -133239402 - B1_Mus1 SINE Alu -1 147 2 4 732 3056 149 39 69 chr5 19297857 19298505 -133238754 - RMER6C LTR ERVK -62 628 1 4 732 475 236 59 11 chr5 19299850 19300042 -133237217 - L1M2 LINE L1 -956 5341 5131 4 732 468 209 46 76 chr5 19300130 19300311 -133236948 + L1M2 LINE L1 5448 5625 -666 4 732 307 55 18 18 chr5 19300380 19300435 -133236824 + (CAAAAA)n Simple_repeat Simple_repeat 3 57 0 4 732 368 337 117 69 chr5 19300461 19300897 -133236362 - L1MEf LINE L1 -4878 1862 1353 4 732 230 301 97 0 chr5 19300904 19301080 -133236179 - L1MEf LINE L1 -5323 1219 1027 4 732 763 165 196 0 chr5 19301746 19301904 -133235355 - B2_Mm2 SINE B2 -6 189 1 4 732 21 0 0 0 chr5 19302728 19302749 -133234510 + AT_rich Low_complexity Low_complexity 1 21 0 4 732 23 54 0 0 chr5 19302888 19302925 -133234334 + AT_rich Low_complexity Low_complexity 1 37 0 4 732 189 0 0 0 chr5 19303358 19303379 -133233880 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 732 426 176 0 0 chr5 19303379 19303464 -133233795 + (TA)n Simple_repeat Simple_repeat 1 85 0 4 732 21 0 0 0 chr5 19303616 19303637 -133233622 + AT_rich Low_complexity Low_complexity 1 21 0 4 732 180 152 0 0 chr5 19304372 19304405 -133232854 + CT-rich Low_complexity Low_complexity 3 35 0 4 732 1173 170 123 8 chr5 19305052 19305313 -133231946 - Lx5 LINE L1 -4 7046 6756 4 732 2006 137 112 19 chr5 19305889 19306254 -133231005 - MTB_Mm LTR MaLR -8 399 1 4 732 405 349 84 50 chr5 19306368 19306630 -133230629 + B4 SINE B4 8 278 -14 4 732 294 29 0 0 chr5 19306661 19306696 -133230563 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 732 522 0 0 0 chr5 19306696 19306753 -133230506 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 732 245 336 38 69 chr5 19307742 19307794 -133229465 - L3 LINE CR1 -3473 1016 969 4 732 4726 66 5 10 chr5 19307794 19308421 -133228838 + L1_Mus3 LINE L1 6010 6633 -5 4 732 245 336 38 69 chr5 19308421 19308499 -133228760 - L3 LINE CR1 -3521 968 890 4 732 218 274 39 52 chr5 19309395 19309472 -133227787 + PB1D7 SINE Alu 45 120 0 4 732 514 324 58 0 chr5 19310274 19310413 -133226846 + RSINE1 SINE B4 2 148 -17 4 732 4037 96 64 7 chr5 19310428 19311036 -133226223 - L1Md_F2 LINE L1 -2 6580 5938 4 732 1976 46 4 0 chr5 19311031 19311271 -133225988 + L1Md_F2 LINE L1 6330 6570 -12 4 732 436 280 104 71 chr5 19312928 19313197 -133224062 + B4A SINE B4 2 279 -13 4 732 423 0 0 0 chr5 19313211 19313258 -133224001 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 732 378 0 0 0 chr5 19313258 19313299 -133223960 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 732 252 59 0 0 chr5 19313299 19313333 -133223926 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 4 732 23 0 0 0 chr5 19313333 19313356 -133223903 + AT_rich Low_complexity Low_complexity 1 23 0 4 732 183 129 0 0 chr5 19313552 19313583 -133223676 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 732 417 282 56 16 chr5 19313887 19314013 -133223246 - ID_B1 SINE B4 -7 217 87 4 732 256 307 100 0 chr5 19314801 19314941 -133222318 - MER63D DNA AcHobo -8 1053 900 4 732 1794 248 20 12 chr5 19315092 19315500 -133221759 + MTD LTR MaLR 6 416 -3 4 732 306 0 0 0 chr5 19315501 19315535 -133221724 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 732 609 279 20 71 chr5 19315665 19315920 -133221339 + L1MA4 LINE L1 5746 5987 -313 4 732 3458 18 5 0 chr5 19315921 19316315 -133220944 - MTA_Mm LTR MaLR 0 396 1 4 732 505 282 43 43 chr5 19316399 19316562 -133220697 + RSINE1 SINE B4 1 163 -2 4 732 226 380 10 39 chr5 19317105 19317209 -133220050 + L3 LINE CR1 3358 3458 -1031 4 732 1412 43 32 5 chr5 19317724 19317911 -133219348 - B2_Mm1t SINE B2 0 193 2 4 732 216 0 0 0 chr5 19318883 19318907 -133218352 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 732 258 105 0 0 chr5 19319028 19319066 -133218193 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 4 732 286 255 0 18 chr5 19319158 19319214 -133218045 - Tigger7 DNA MER2_type -13 2478 2424 4 732 603 273 0 0 chr5 19319489 19319628 -133217631 + B1F2 SINE Alu 5 143 -6 4 732 220 325 84 26 chr5 19319794 19319949 -133217310 - MIRb SINE MIR -104 164 1 4 732 28 0 0 0 chr5 19320280 19320308 -133216951 + AT_rich Low_complexity Low_complexity 1 28 0 4 732 708 158 25 12 chr5 19320653 19320813 -133216446 + GA-rich Low_complexity Low_complexity 3 164 0 4 732 712 279 85 19 chr5 19320900 19321159 -133216100 + Lx8 LINE L1 7196 7471 -2 4 732 3804 171 103 20 chr5 19322542 19323335 -133213924 - RMER13A LTR ERVK -1 859 1 4 732 1448 28 0 11 chr5 19323644 19323826 -133213433 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 4 732 237 196 0 0 chr5 19323833 19323889 -133213370 + CT-rich Low_complexity Low_complexity 2 57 0 4 732 1087 239 105 23 chr5 19324248 19324590 -133212669 - ORR1D2 LTR MaLR 0 370 1 4 732 23 33 0 0 chr5 19324771 19324801 -133212458 + AT_rich Low_complexity Low_complexity 1 30 0 4 732 200 209 11 34 chr5 19324886 19324975 -133212284 + CT-rich Low_complexity Low_complexity 4 90 0 4 732 4515 63 3 3 chr5 19325167 19325755 -133211504 + L1_Mus1 LINE L1 5978 6565 -2 4 732 3030 238 80 8 chr5 19326740 19327449 -133209810 - Lx7 LINE L1 -442 7254 6495 4 732 3303 222 43 11 chr5 19327444 19328601 -133208658 - Lx5 LINE L1 -577 6883 5451 4 732 288 0 0 0 chr5 19328601 19328633 -133208626 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 732 2910 181 24 14 chr5 19328633 19328798 -133208461 - Lx5 LINE L1 -430 5450 5285 4 732 47 53 0 0 chr5 19328891 19328966 -133208293 + AT_rich Low_complexity Low_complexity 1 75 0 4 732 3856 86 22 0 chr5 19328985 19329533 -133207726 - L1VL4 LINE L1 -152 3407 2848 4 732 6621 95 13 9 chr5 19329531 19330854 -133206405 - L1VL4 LINE L1 -2230 1329 1 4 732 3403 55 0 0 chr5 19330912 19331328 -133205931 - L1_Mus1 LINE L1 0 6567 6152 4 732 2170 189 55 45 chr5 19331328 19331837 -133205422 - Lx5 LINE L1 -753 5127 4614 4 732 315 333 44 6 chr5 19333255 19333415 -133203844 + L1M5 LINE L1 5234 5399 -747 4 732 297 288 0 48 chr5 19333429 19333542 -133203717 + RSINE1 SINE B4 19 165 0 4 732 349 359 63 34 chr5 19333594 19333833 -133203426 + L1M5 LINE L1 5393 5638 -602 4 732 198 103 0 0 chr5 19333865 19333894 -133203365 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 732 297 0 0 0 chr5 19334257 19334290 -133202969 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 732 553 209 0 13 chr5 19334538 19334693 -133202566 + (TA)n Simple_repeat Simple_repeat 1 153 0 4 732 24 32 0 0 chr5 19335118 19335149 -133202110 + AT_rich Low_complexity Low_complexity 1 31 0 4 732 444 281 0 0 chr5 19335851 19335957 -133201302 - PB1D7 SINE Alu -1 119 14 4 732 227 162 0 0 chr5 19336605 19336642 -133200617 - RSINE1 SINE B4 -43 122 86 4 732 635 322 7 116 chr5 19337000 19337302 -133199957 - B4A SINE B4 -18 274 6 4 732 3821 198 63 72 chr5 19337654 19338567 -133198692 - RMER13B LTR ERVK -3 905 1 4 732 317 283 70 81 chr5 19338823 19339081 -133198178 - ORR1E LTR MaLR -13 346 92 4 732 545 306 38 48 chr5 19341471 19341787 -133195472 - L1MB8 LINE L1 -237 5941 5629 4 732 1475 211 96 82 chr5 19341783 19342318 -133194941 - Lx6 LINE L1 -20 7440 6535 4 732 279 0 0 0 chr5 19344721 19344752 -133192507 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 4 732 262 269 25 37 chr5 19344994 19345075 -133192184 - RSINE1 SINE B4 -83 82 3 4 732 262 378 25 1 chr5 19346116 19346258 -133191001 - MIRc SINE MIR -47 161 13 4 732 22 0 0 0 chr5 19346340 19346362 -133190897 + AT_rich Low_complexity Low_complexity 1 22 0 4 732 620 278 16 0 chr5 19346442 19346568 -133190691 - RSINE1 SINE B4 -36 129 2 4 732 378 0 0 0 chr5 19346624 19346666 -133190593 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 732 494 349 62 0 chr5 19346683 19346812 -133190447 - RSINE1 SINE B4 0 165 29 4 732 366 245 7 46 chr5 19347829 19347936 -133189323 - B1_Mus2 SINE Alu -12 108 3 4 732 239 311 0 118 chr5 19347854 19347956 -133189303 - MT2B LTR ERVL -364 237 148 4 732 2845 96 35 7 chr5 19347988 19348410 -133188849 - L1Md_F2 LINE L1 -3 6579 6146 4 732 2002 110 0 0 chr5 19348410 19348691 -133188568 - L1Md_F LINE L1 -5916 603 323 4 732 286 313 25 50 chr5 19348857 19348978 -133188281 - B4A SINE B4 -87 205 88 4 732 309 311 9 55 chr5 19349004 19349113 -133188146 - B4A SINE B4 -173 119 16 4 732 21 36 0 0 chr5 19350682 19350710 -133186549 + AT_rich Low_complexity Low_complexity 1 28 0 4 732 24 0 0 0 chr5 19350756 19350780 -133186479 + AT_rich Low_complexity Low_complexity 1 24 0 4 732 37 52 0 0 chr5 19350831 19350889 -133186370 + AT_rich Low_complexity Low_complexity 1 58 0 4 732 2391 219 23 4 chr5 19352026 19352548 -133184711 - Lx LINE L1 -5 6649 6118 4 732 7063 97 22 3 chr5 19352990 19353994 -133183265 - RLTR13D5 LTR ERVK 0 1023 1 4 732 279 0 0 0 chr5 19354276 19354307 -133182952 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 732 6143 240 57 23 chr5 19354830 19357256 -133180003 + Lx7 LINE L1 4844 7333 -363 4 732 495 0 0 0 chr5 19357256 19357311 -133179948 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 732 252 0 0 0 chr5 19357311 19357338 -133179921 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 732 6143 263 60 32 chr5 19357338 19357431 -133179828 + Lx7 LINE L1 7334 7431 -265 4 732 823 320 27 18 chr5 19357523 19357851 -133179408 + Lx8 LINE L1 6878 7208 -265 4 732 304 274 81 45 chr5 19357909 19358020 -133179239 + L1M5 LINE L1 5555 5669 -510 4 732 707 301 55 22 chr5 19358048 19358412 -133178847 + L1MB7 LINE L1 5790 6165 -19 4 732 1564 179 47 87 chr5 19358498 19358925 -133178334 - RMER17C LTR ERVK 0 410 1 4 732 488 122 12 0 chr5 19359606 19359688 -133177571 + (TA)n Simple_repeat Simple_repeat 1 83 0 5 732 204 241 0 0 chr5 19360043 19360101 -133177158 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 732 23 33 0 0 chr5 19360286 19360316 -133176943 + AT_rich Low_complexity Low_complexity 1 30 0 5 732 570 148 0 0 chr5 19360430 19360531 -133176728 + (TG)n Simple_repeat Simple_repeat 1 101 0 5 732 357 43 0 0 chr5 19360964 19361011 -133176248 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 5 732 430 308 27 7 chr5 19362403 19362550 -133174709 - RSINE1 SINE B4 -13 152 3 5 732 763 283 46 42 chr5 19362968 19363252 -133174007 - B4A SINE B4 -6 286 2 5 732 410 331 105 7 chr5 19363505 19363648 -133173611 + B3A SINE B2 6 162 -36 5 732 207 125 0 0 chr5 19363656 19363696 -133173563 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 732 2337 229 41 21 chr5 19364251 19364814 -133172445 - RMER1B Other Other -9 1057 484 5 732 224 108 44 44 chr5 19365387 19365455 -133171804 + GA-rich Low_complexity Low_complexity 2 69 0 5 732 1014 123 6 16 chr5 19365466 19365648 -133171611 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 5 732 1371 24 0 28 chr5 19365648 19365863 -133171396 + (GAGAA)n Simple_repeat Simple_repeat 1 209 0 5 732 2105 154 80 5 chr5 19366094 19366480 -133170779 - MTC LTR MaLR 0 421 7 5 732 470 240 55 67 chr5 19366596 19366761 -133170498 - RSINE1 SINE B4 0 165 3 5 732 251 54 27 0 chr5 19367939 19367976 -133169283 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 732 229 182 0 22 chr5 19368231 19368276 -133168983 - L4 LINE RTE -201 1828 1785 5 732 195 42 0 0 chr5 19369218 19369242 -133168017 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 5 732 486 234 1 2 chr5 19369295 19369395 -133167864 + ORR1D1 LTR MaLR 1 99 -260 5 732 401 337 103 53 chr5 19369432 19369792 -133167467 - L1MD LINE L1 -1086 5060 4683 5 732 561 255 0 0 chr5 19369800 19369906 -133167353 + B1_Mur3 SINE Alu 3 108 -41 5 732 269 338 52 13 chr5 19369906 19370137 -133167122 - L1MC LINE L1 -1499 4647 4408 5 732 21 0 0 0 chr5 19370818 19370839 -133166420 + AT_rich Low_complexity Low_complexity 1 21 0 5 732 345 246 0 18 chr5 19371055 19371167 -133166092 + Lx9 LINE L1 7532 7641 -3 5 732 424 335 50 40 chr5 19372008 19372207 -133165052 - LTR79 LTR ERVL -2 525 325 5 732 549 282 60 60 chr5 19372639 19372969 -133164290 + RLTR15 LTR ERVK 45 344 -15 5 732 351 78 0 0 chr5 19373441 19373492 -133163767 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 5 732 935 254 56 136 chr5 19373569 19373980 -133163279 - MTE2a LTR MaLR -1 378 1 5 732 566 0 29 0 chr5 19374107 19374176 -133163083 + (TTTTA)n Simple_repeat Simple_repeat 2 72 0 5 732 259 359 67 17 chr5 19374182 19374301 -133162958 - ID_B1 SINE B4 -9 215 91 5 732 455 287 0 0 chr5 19374551 19374659 -133162600 - Lx8 LINE L1 -308 7165 7058 5 732 285 292 0 0 chr5 19374736 19374808 -133162451 - Lx8 LINE L1 -531 6942 6871 5 732 202 0 59 29 chr5 19374980 19375014 -133162245 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 732 2188 136 3 0 chr5 19375219 19375543 -133161716 + ORR1A2 LTR MaLR 3 327 0 5 732 33 43 0 0 chr5 19375670 19375717 -133161542 + AT_rich Low_complexity Low_complexity 1 47 0 5 732 685 251 204 45 chr5 19375806 19376288 -133160971 - Lx9 LINE L1 -174 7470 6912 5 732 1230 219 265 40 chr5 19376278 19376806 -133160453 + Lx6 LINE L1 6774 7420 -40 5 732 324 0 0 0 chr5 19376810 19376846 -133160413 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 732 893 265 146 0 chr5 19376852 19377112 -133160147 - Lx9 LINE L1 -794 6850 6553 5 732 989 124 0 6 chr5 19378915 19379077 -133158182 + (GAAA)n Simple_repeat Simple_repeat 4 164 0 5 732 813 295 5 0 chr5 19379941 19380148 -133157111 + B3 SINE B2 9 216 0 5 732 247 393 35 35 chr5 19381152 19381321 -133155938 + MamSINE1 SINE tRNA 122 290 0 5 732 244 358 37 0 chr5 19384741 19384850 -133152409 - MER20 DNA MER1_type -60 159 47 5 732 535 277 16 48 chr5 19384929 19385115 -133152144 + B3A SINE B2 2 181 -17 5 732 295 67 25 51 chr5 19386098 19386177 -133151082 + (CAAAAA)n Simple_repeat Simple_repeat 6 82 0 5 732 594 288 93 25 chr5 19386255 19386608 -133150651 + MTE2b LTR MaLR 1 377 -2 5 732 230 205 11 46 chr5 19387171 19387258 -133150001 + T-rich Low_complexity Low_complexity 3 86 0 5 732 9289 80 9 3 chr5 19387674 19389671 -133147588 - L1Md_F2 LINE L1 -5 6577 4571 5 732 11847 49 7 1 chr5 19390088 19392374 -133144885 - L1Md_F3 LINE L1 -3 6581 4280 5 732 3150 56 7 5 chr5 19392374 19392806 -133144453 - L1Md_F2 LINE L1 -1317 4566 4134 5 732 642 113 10 0 chr5 19392804 19392901 -133144358 - L1Md_F LINE L1 -6131 388 291 5 732 235 273 0 0 chr5 19393352 19393407 -133143852 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 732 564 273 33 33 chr5 19393408 19393590 -133143669 - B3A SINE B2 -16 182 1 5 732 22 70 0 0 chr5 19393696 19393739 -133143520 + AT_rich Low_complexity Low_complexity 1 43 0 5 732 235 265 20 10 chr5 19394200 19394299 -133142960 + A-rich Low_complexity Low_complexity 1 100 0 5 732 240 35 0 0 chr5 19394778 19394807 -133142452 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 732 1049 129 6 0 chr5 19394964 19395134 -133142125 + Lx2 LINE L1 6827 6997 0 5 732 1564 288 215 17 chr5 19395702 19396315 -133140944 - Lx8 LINE L1 -4 7469 6764 5 732 1092 6 30 24 chr5 19396315 19396484 -133140775 + (CA)n Simple_repeat Simple_repeat 2 171 0 5 732 1564 288 215 17 chr5 19396484 19396790 -133140469 - Lx8 LINE L1 -710 6763 6369 5 732 221 0 0 33 chr5 19397196 19397226 -133140033 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 5 732 266 306 106 83 chr5 19397314 19397751 -133139508 - L2a LINE L2 -38 3388 2948 5 732 206 356 171 29 chr5 19397776 19398091 -133139168 - L2 LINE L2 -386 3033 2674 5 732 1096 277 84 21 chr5 19398156 19398488 -133138771 + MTE2b LTR MaLR 1 353 -26 5 733 243 0 0 0 chr5 19399538 19399565 -133137694 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 733 540 0 0 0 chr5 19399565 19399624 -133137635 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 733 294 299 101 90 chr5 19399627 19399916 -133137343 - B4A SINE B4 -1 291 3 5 733 270 0 0 0 chr5 19399963 19399993 -133137266 + (TAA)n Simple_repeat Simple_repeat 2 31 0 5 733 203 128 43 0 chr5 19401125 19401172 -133136087 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 733 318 132 0 0 chr5 19401176 19401229 -133136030 + (TCTCCC)n Simple_repeat Simple_repeat 5 57 0 5 733 1282 228 167 20 chr5 19401755 19402118 -133135141 - MTD LTR MaLR -14 405 1 5 733 28 29 0 0 chr5 19402195 19402230 -133135029 + AT_rich Low_complexity Low_complexity 1 35 0 5 733 186 189 0 0 chr5 19403371 19403408 -133133851 + CT-rich Low_complexity Low_complexity 4 40 0 5 733 315 71 0 0 chr5 19403561 19403603 -133133656 + (CATA)n Simple_repeat Simple_repeat 2 43 0 5 733 231 286 147 61 chr5 19403886 19404083 -133133176 + MIRb SINE MIR 1 214 -54 5 733 292 270 11 43 chr5 19405109 19405202 -133132057 - BC1_Mm scRNA scRNA -60 92 3 5 733 235 348 11 0 chr5 19405546 19405638 -133131621 + (ATGGTG)n Simple_repeat Simple_repeat 6 98 0 5 733 222 91 0 0 chr5 19405680 19405713 -133131546 + (ATGGTG)n Simple_repeat Simple_repeat 5 37 0 5 733 1327 254 126 3 chr5 19406801 19407157 -133130102 - MTD LTR MaLR -2 417 18 5 733 217 302 120 19 chr5 19407638 19407746 -133129513 + MIRb SINE MIR 74 192 -76 5 733 644 254 137 5 chr5 19407760 19407950 -133129309 + B3 SINE B2 2 216 0 5 733 1170 63 0 0 chr5 19408961 19409103 -133128156 + B1_Mus2 SINE Alu 1 142 -5 5 733 1322 62 6 0 chr5 19409127 19409304 -133127955 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 733 1540 0 0 12 chr5 19409306 19409549 -133127710 + (GAA)n Simple_repeat Simple_repeat 1 239 0 5 733 186 43 0 0 chr5 19410382 19410405 -133126854 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5 733 2088 183 98 21 chr5 19410984 19411453 -133125806 + RLTR16 LTR ERVK 1 505 0 5 733 196 53 26 26 chr5 19411706 19411745 -133125514 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 733 1141 61 0 7 chr5 19411747 19411896 -133125363 - B1_Mus1 SINE Alu 0 148 1 5 733 238 333 40 0 chr5 19412267 19412342 -133124917 + ID2 SINE ID 3 80 -3 5 733 185 196 39 0 chr5 19412748 19412799 -133124460 - MIR SINE MIR -65 143 91 5 733 228 111 0 0 chr5 19412861 19412897 -133124362 + (T)n Simple_repeat Simple_repeat 1 36 0 5 733 678 62 0 0 chr5 19413473 19413569 -133123690 + (GA)n Simple_repeat Simple_repeat 2 97 0 5 733 259 143 48 0 chr5 19418121 19418184 -133119075 + CT-rich Low_complexity Low_complexity 3 68 0 5 733 230 322 15 115 chr5 19418186 19418316 -133118943 - PB1 SINE Alu -9 118 2 5 733 3291 48 5 0 chr5 19418474 19418868 -133118391 + MTA_Mm LTR MaLR 1 396 0 5 733 339 226 96 11 chr5 19419422 19419516 -133117743 - L1MDa LINE L1 -4140 2493 2392 5 733 362 186 0 11 chr5 19419794 19419881 -133117378 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 733 360 0 0 0 chr5 19420578 19420618 -133116641 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 733 682 287 29 6 chr5 19421707 19421882 -133115377 - B3 SINE B2 -9 207 29 5 733 437 243 80 18 chr5 19422012 19422125 -133115134 + MER5A1 DNA MER1_type 14 133 -33 5 733 239 347 71 15 chr5 19422370 19422570 -133114689 + MIRb SINE MIR 40 253 -15 5 733 285 296 72 54 chr5 19423054 19423151 -133114108 + L1MA8 LINE L1 6004 6100 -191 5 733 243 0 0 0 chr5 19423151 19423178 -133114081 + (CAA)n Simple_repeat Simple_repeat 1 27 0 5 733 285 296 72 54 chr5 19423178 19423194 -133114065 + L1MA8 LINE L1 6101 6109 -182 5 733 1689 21 0 0 chr5 19423194 19423386 -133113873 + B2_Mm1t SINE B2 2 193 0 5 733 285 296 72 54 chr5 19423386 19423550 -133113709 + L1MA8 LINE L1 6110 6286 -5 5 733 327 299 0 0 chr5 19423591 19423668 -133113591 - ID4_ SINE ID -5 78 2 5 733 21 0 0 0 chr5 19423810 19423831 -133113428 + AT_rich Low_complexity Low_complexity 1 21 0 6 733 685 283 40 23 chr5 19424934 19425111 -133112148 + B3 SINE B2 1 180 -36 6 733 328 333 0 0 chr5 19425537 19425633 -133111626 - L2a LINE L2 -1 3425 3330 6 733 348 331 65 5 chr5 19426023 19426208 -133111051 - L2a LINE L2 -1218 2201 2006 6 733 384 299 9 9 chr5 19426500 19426608 -133110651 - PB1D10 SINE Alu -8 109 2 6 733 262 346 184 3 chr5 19426630 19426929 -133110330 - L2a LINE L2 -1739 1680 1328 6 733 698 258 34 78 chr5 19428026 19428060 -133109199 - B3A SINE B2 -1 197 166 6 733 330 115 0 0 chr5 19428060 19428121 -133109138 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 733 698 258 34 78 chr5 19428121 19428292 -133108967 - B3A SINE B2 -33 165 1 6 733 805 301 65 14 chr5 19429591 19429867 -133107392 - B4 SINE B4 -1 291 2 6 733 384 22 0 0 chr5 19430722 19430767 -133106492 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 733 311 250 0 0 chr5 19430797 19430865 -133106394 - ID4 SINE ID -13 70 3 6 733 308 286 148 49 chr5 19430924 19431086 -133106173 - L1MEf LINE L1 -4549 1651 1474 6 733 205 188 29 14 chr5 19431217 19431287 -133105972 + CT-rich Low_complexity Low_complexity 2 72 0 6 733 541 292 112 17 chr5 19431358 19431839 -133105420 - L1MEf LINE L1 -4998 1202 676 6 733 21 0 0 0 chr5 19432016 19432037 -133105222 + AT_rich Low_complexity Low_complexity 1 21 0 6 733 578 300 104 56 chr5 19432123 19432391 -133104868 + MER90a LTR ERV1 24 304 -310 6 733 275 303 159 21 chr5 19432841 19432917 -133104342 - L1MEf LINE L1 -5854 240 147 6 733 486 0 0 0 chr5 19432917 19432971 -133104288 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 733 275 303 159 21 chr5 19432971 19433083 -133104176 - L1MEf LINE L1 -5948 146 26 6 733 187 324 113 42 chr5 19434018 19434160 -133103099 + L2a LINE L2 3273 3424 -2 6 733 1004 88 0 13 chr5 19434318 19434468 -133102791 + (TTTC)n Simple_repeat Simple_repeat 2 149 0 6 733 224 322 207 14 chr5 19434631 19434848 -133102411 + L2a LINE L2 3095 3353 -73 6 733 2353 229 51 35 chr5 19435713 19436127 -133101132 - RLTR17 LTR ERVK -77 615 192 6 733 228 35 0 0 chr5 19436127 19436156 -133101103 + (TCTCC)n Simple_repeat Simple_repeat 3 31 0 6 733 2353 229 51 35 chr5 19436156 19436344 -133100915 - RLTR17 LTR ERVK -501 191 4 6 733 942 99 12 12 chr5 19436529 19436692 -133100567 + (TCCC)n Simple_repeat Simple_repeat 2 164 0 6 733 1542 226 35 5 chr5 19436874 19437244 -133100015 - Lx9 LINE L1 -373 7271 6891 6 733 417 308 37 31 chr5 19437333 19437494 -133099765 - RSINE1 SINE B4 0 165 4 6 733 293 292 56 19 chr5 19437682 19437790 -133099469 + PB1D10 SINE Alu 1 112 -5 6 733 227 208 18 36 chr5 19438384 19438439 -133098820 + L2c LINE L2 3334 3387 0 6 733 267 328 49 0 chr5 19440585 19440707 -133096552 + MIR SINE MIR 111 238 -24 6 733 643 243 152 6 chr5 19441322 19441500 -133095759 + B3 SINE B2 13 216 0 6 733 207 0 0 0 chr5 19442000 19442023 -133095236 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 733 216 0 0 0 chr5 19442029 19442053 -133095206 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 733 378 340 0 14 chr5 19442271 19442417 -133094842 + (TTCA)n Simple_repeat Simple_repeat 2 145 0 6 733 620 290 49 41 chr5 19442829 19443030 -133094229 - B3 SINE B2 0 198 1 6 733 348 287 90 95 chr5 19443144 19443333 -133093926 + B3A SINE B2 10 197 -1 6 733 2740 237 100 62 chr5 19444681 19445598 -133091661 - Lx6 LINE L1 -27 7433 6288 6 733 324 130 0 0 chr5 19445862 19445931 -133091328 + (A)n Simple_repeat Simple_repeat 1 69 0 6 733 180 0 0 0 chr5 19446480 19446500 -133090759 + (T)n Simple_repeat Simple_repeat 1 20 0 6 733 1245 48 0 0 chr5 19446500 19446647 -133090612 - B1_Mus2 SINE Alu 0 147 1 6 733 1116 89 0 0 chr5 19446881 19447061 -133090198 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 733 250 284 29 0 chr5 19447842 19447944 -133089315 - L1MA5 LINE L1 -23 6277 6173 6 733 513 0 0 0 chr5 19447965 19448022 -133089237 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 733 21 71 0 0 chr5 19448141 19448183 -133089076 + AT_rich Low_complexity Low_complexity 1 42 0 6 733 297 0 0 0 chr5 19448899 19448932 -133088327 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 733 4654 129 11 60 chr5 19448945 19449761 -133087498 - Lx3B LINE L1 -6 6967 6192 6 733 350 277 98 72 chr5 19450138 19450484 -133086775 - Charlie1a DNA MER1_type -9 1446 1092 6 733 4829 129 17 8 chr5 19450505 19451252 -133086007 + Lx2 LINE L1 6244 6997 0 6 733 437 178 262 0 chr5 19451304 19451411 -133085848 - B1_Mur1 SINE Alu -14 135 1 6 733 1929 290 88 25 chr5 19451411 19451628 -133085631 - Charlie1a DNA MER1_type -283 1172 944 6 733 1259 89 61 0 chr5 19451628 19451808 -133085451 + B2_Mm2 SINE B2 1 191 -4 6 733 1929 290 88 25 chr5 19451808 19452350 -133084909 - Charlie1a DNA MER1_type -512 943 365 6 733 284 260 14 14 chr5 19452576 19452650 -133084609 - ID4 SINE ID -9 74 1 6 733 500 262 131 0 chr5 19452691 19452836 -133084423 - RSINE1 SINE B4 0 165 2 6 733 463 333 63 51 chr5 19452859 19453096 -133084163 - Charlie1a DNA MER1_type -1208 247 8 6 733 2034 249 45 12 chr5 19454605 19455094 -133082165 + RLTR17 LTR ERVK 114 618 -74 6 733 361 276 86 25 chr5 19456729 19456926 -133080333 - L1ME2z LINE L1 -7 6437 6229 6 733 180 0 0 0 chr5 19458455 19458475 -133078784 + (T)n Simple_repeat Simple_repeat 1 20 0 6 733 200 111 0 27 chr5 19458631 19458668 -133078591 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 6 733 1042 237 213 22 chr5 19459424 19459748 -133077511 - MTD LTR MaLR -22 397 12 6 733 3478 242 149 29 chr5 19459759 19460881 -133076378 - MTD-int LTR MaLR -2 1256 1 6 733 22 0 0 0 chr5 19462306 19462328 -133074931 + AT_rich Low_complexity Low_complexity 1 22 0 6 733 36210 41 2 4 chr5 19462419 19468813 -133068446 - L1Md_T LINE L1 -12 6573 93 6 733 323 78 20 0 chr5 19469697 19469748 -133067511 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 733 365 288 139 20 chr5 19469983 19470228 -133067031 - L1M2 LINE L1 -472 5828 5555 6 733 1059 238 140 25 chr5 19470232 19470789 -133066470 - L1M2 LINE L1 -1351 4792 4172 6 733 447 203 22 79 chr5 19470869 19471008 -133066251 - Lx7 LINE L1 -3 7693 7563 6 733 854 310 75 56 chr5 19471010 19471262 -133065997 - L1_Mur3 LINE L1 -1740 4140 3875 6 733 2901 41 8 27 chr5 19471262 19471637 -133065622 - L1Md_F3 LINE L1 -3 6581 6214 6 733 854 310 75 56 chr5 19471637 19472132 -133065127 - L1_Mur3 LINE L1 -2006 3874 3379 6 733 573 287 43 14 chr5 19472913 19473051 -133064208 + RSINE1 SINE B4 6 147 -18 6 733 203 217 96 55 chr5 19473180 19473253 -133064006 + MIR3 SINE MIR 95 170 -38 6 733 360 43 0 0 chr5 19474200 19474246 -133063013 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 733 23 0 0 0 chr5 19474284 19474307 -133062952 + AT_rich Low_complexity Low_complexity 1 23 0 6 733 246 339 47 16 chr5 19475982 19476111 -133061148 + MIR SINE MIR 119 251 -11 6 733 549 0 0 0 chr5 19476547 19476608 -133060651 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 733 22 0 0 0 chr5 19476887 19476909 -133060350 + AT_rich Low_complexity Low_complexity 1 22 0 6 733 225 304 51 0 chr5 19477219 19477298 -133059961 + LTR86A1 LTR ERVL 5 87 -421 6 733 227 342 41 41 chr5 19477388 19477510 -133059749 + LTR86A1 LTR ERVL 235 356 -157 6 733 726 305 107 33 chr5 19477689 19477960 -133059299 + B4A SINE B4 2 292 0 6 733 363 192 0 0 chr5 19477983 19478061 -133059198 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 733 739 167 32 13 chr5 19479171 19479329 -133057930 + Lx2B LINE L1 6838 6998 -2 6 733 3974 208 65 27 chr5 19479345 19480240 -133057019 - RMER1A Other Other -14 1016 88 6 733 250 250 0 12 chr5 19480460 19480541 -133056718 - Lx9 LINE L1 -17 7627 7548 6 733 2046 212 49 15 chr5 19480538 19481008 -133056251 - Lx6 LINE L1 -625 6835 6350 6 733 2912 104 56 0 chr5 19481022 19481472 -133055787 - IAPLTR2_Mm LTR ERVK 0 475 1 6 733 13550 53 9 3 chr5 19481474 19483235 -133054024 - IAPEz-int LTR ERVK -2 6479 4708 6 733 1802 84 12 0 chr5 19483262 19483513 -133053746 - IAPEz-int LTR ERVK -5183 2497 2244 6 733 894 59 0 0 chr5 19483508 19483627 -133053632 - IAPEz-int LTR ERVK -5004 1477 1359 6 733 3391 83 14 26 chr5 19483627 19484429 -133052830 - IAPEz-int LTR ERVK -5819 662 3 6 733 2836 104 75 0 chr5 19484431 19484873 -133052386 - IAPLTR2_Mm LTR ERVK 0 475 1 6 733 444 209 0 0 chr5 19484889 19484975 -133052284 - Lx6 LINE L1 -1160 6300 6215 6 733 346 204 114 30 chr5 19485012 19485179 -133052080 + Lx7 LINE L1 5939 6119 -1577 6 733 2177 242 45 8 chr5 19485192 19485664 -133051595 - Lx9 LINE L1 -670 6974 6482 6 733 414 0 0 0 chr5 19485664 19485710 -133051549 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 733 2177 242 45 8 chr5 19485710 19485833 -133051426 - Lx9 LINE L1 -1163 6481 6357 6 733 197 79 0 73 chr5 19486748 19486789 -133050470 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6 733 181 113 36 36 chr5 19486908 19486963 -133050296 + A-rich Low_complexity Low_complexity 1 55 0 6 733 348 43 0 0 chr5 19488429 19488475 -133048784 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 733 189 107 0 0 chr5 19488476 19488504 -133048755 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 6 733 234 0 0 0 chr5 19489837 19489863 -133047396 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 6 733 5914 132 20 11 chr5 19491811 19492767 -133044492 - Lx3C LINE L1 -7 6969 6005 6 733 710 141 8 0 chr5 19493335 19493463 -133043796 + (TTTC)n Simple_repeat Simple_repeat 1 129 0 6 733 215 103 26 0 chr5 19494316 19494355 -133042904 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 733 930 102 43 0 chr5 19497301 19497565 -133039694 + (CAGAGA)n Simple_repeat Simple_repeat 1 275 0 6 733 270 289 83 12 chr5 19497734 19497818 -133039441 - MER63B DNA AcHobo -43 393 304 6 733 7749 85 15 15 chr5 19498091 19500000 -133037259 - L1Md_F2 LINE L1 0 6997 5073 6 733 18664 133 48 48 chr5 19500000 19504708 -133032551 - L1Md_F LINE L1 -811 5072 369 1 733 509 0 16 0 chr5 19504728 19504789 -133032470 + (TTA)n Simple_repeat Simple_repeat 2 63 0 2 733 259 344 16 32 chr5 19508202 19508328 -133028931 - MIRb SINE MIR -28 240 117 3 733 180 125 0 0 chr5 19508629 19508661 -133028598 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 4 733 349 261 73 40 chr5 19508755 19508879 -133028380 + RSINE1 SINE B4 3 130 -35 5 733 182 91 30 0 chr5 19508915 19508948 -133028311 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 6 733 559 286 99 14 chr5 19509074 19509287 -133027972 + B4A SINE B4 29 259 -33 7 733 549 44 0 0 chr5 19510083 19510151 -133027108 + (GA)n Simple_repeat Simple_repeat 1 68 0 8 733 260 331 59 43 chr5 19510464 19510650 -133026609 + L3 LINE CR1 4043 4231 -258 9 733 535 235 101 0 chr5 19511210 19511329 -133025930 - B1_Mur2 SINE Alu -13 136 6 1 733 1998 149 14 3 chr5 19511380 19511729 -133025530 + RLTR15 LTR ERVK 1 353 -6 1 733 496 356 7 7 chr5 19511728 19511875 -133025384 - RSINE1 SINE B4 -14 151 5 1 733 194 241 112 67 chr5 19512205 19512294 -133024965 + L3 LINE CR1 3473 3565 -924 1 733 828 257 98 54 chr5 19514078 19514374 -133022885 + ORR1E LTR MaLR 40 348 -11 1 733 678 87 0 10 chr5 19514800 19514904 -133022355 - B1_Mm SINE Alu -44 103 1 1 733 606 335 26 52 chr5 19515341 19515612 -133021647 + B4A SINE B4 1 264 -28 1 733 977 108 64 0 chr5 19516898 19517055 -133020204 - URR1A DNA MER1_type 0 226 60 1 733 408 240 136 27 chr5 19517055 19517075 -133020184 + CYRA11_Mm Unknown Y-chromosome 209 368 -249 1 733 3362 157 43 19 chr5 19517400 19518023 -133019236 - RLTR26 LTR ERVK 0 642 5 1 733 596 246 15 0 chr5 19518073 19518207 -133019052 + B1F SINE Alu 3 138 -11 2 733 284 98 274 0 chr5 19518375 19518426 -133018833 - URR1B DNA MER1_type 0 225 161 2 733 818 156 194 0 chr5 19518428 19518608 -133018651 - URR1B DNA MER1_type -10 215 1 2 733 2081 142 3 3 chr5 19518948 19519273 -133017986 + ORR1A1 LTR MaLR 1 325 -21 2 733 28 0 0 0 chr5 19519291 19519319 -133017940 + AT_rich Low_complexity Low_complexity 1 28 0 2 733 21 57 0 0 chr5 19519724 19519759 -133017500 + AT_rich Low_complexity Low_complexity 1 35 0 2 733 354 154 0 0 chr5 19519840 19519918 -133017341 + GA-rich Low_complexity Low_complexity 2 79 0 2 733 221 254 84 0 chr5 19520079 19520150 -133017109 + ID_B1 SINE B4 88 164 -60 2 733 543 327 24 15 chr5 19521500 19521705 -133015554 - B3 SINE B2 -9 207 1 2 733 213 196 0 0 chr5 19523455 19523511 -133013748 + CT-rich Low_complexity Low_complexity 2 57 0 2 733 209 385 0 0 chr5 19523807 19523890 -133013369 + MIRc SINE MIR 66 148 -120 2 733 230 378 73 24 chr5 19524572 19524778 -133012481 + L3b LINE CR1 249 464 -18 3 733 3294 37 0 15 chr5 19526066 19526477 -133010782 + L1_Mus1 LINE L1 6163 6567 0 3 733 525 32 0 0 chr5 19528389 19528452 -133008807 + (TAA)n Simple_repeat Simple_repeat 2 64 0 3 733 249 57 0 0 chr5 19529447 19529482 -133007777 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 734 460 257 95 105 chr5 19530685 19530885 -133006374 - B3A SINE B2 0 198 1 3 734 1129 244 45 74 chr5 19531831 19532330 -133004929 - MT2B LTR ERVL -2 599 4 3 734 807 287 73 104 chr5 19532332 19532776 -133004483 + MLT2B4 LTR ERVL 86 527 -40 3 734 32 43 0 0 chr5 19532801 19532847 -133004412 + AT_rich Low_complexity Low_complexity 1 46 0 3 734 330 274 27 0 chr5 19533341 19533456 -133003803 + PB1D10 SINE Alu 14 137 -12 3 734 1155 88 0 0 chr5 19535751 19535898 -133001361 + B1_Mus2 SINE Alu 1 147 0 3 734 24 32 0 0 chr5 19535912 19535943 -133001316 + AT_rich Low_complexity Low_complexity 1 31 0 4 734 2017 27 15 11 chr5 19536054 19536315 -133000944 - L1Md_F3 LINE L1 0 6584 6323 4 734 3184 186 38 0 chr5 19536774 19537412 -132999847 - Lx4B LINE L1 -764 6294 5633 4 734 4126 168 35 21 chr5 19537414 19538175 -132999084 + Lx5 LINE L1 6276 7047 -3 4 734 611 68 11 0 chr5 19538236 19538324 -132998935 - L1_Mus4 LINE L1 -307 6329 6241 4 734 3126 109 13 4 chr5 19539456 19539924 -132997335 + L1_Mus4 LINE L1 6164 6635 -1 4 734 21 57 0 0 chr5 19540559 19540594 -132996665 + AT_rich Low_complexity Low_complexity 1 35 0 4 734 180 0 0 0 chr5 19542561 19542581 -132994678 + (TTG)n Simple_repeat Simple_repeat 3 22 0 4 734 482 279 54 0 chr5 19542582 19542711 -132994548 - B1_Mur2 SINE Alu -6 143 8 4 734 354 301 9 64 chr5 19543252 19543362 -132993897 + PB1D10 SINE Alu 5 108 -9 4 734 23 0 0 0 chr5 19544075 19544098 -132993161 + AT_rich Low_complexity Low_complexity 1 23 0 5 734 323 148 62 0 chr5 19544315 19544396 -132992863 - L1MD2 LINE L1 -2 6357 6272 5 734 963 321 62 34 chr5 19544413 19545118 -132992141 - L1MD1 LINE L1 -144 6098 5374 5 734 616 311 65 58 chr5 19545262 19545727 -132991532 - L1MC1 LINE L1 -198 6135 5668 5 734 428 196 26 77 chr5 19545731 19545886 -132991373 - L1MC1 LINE L1 -745 5401 5255 5 734 330 91 0 0 chr5 19546097 19546152 -132991107 + (CTTG)n Simple_repeat Simple_repeat 1 55 0 5 734 1528 206 75 9 chr5 19546154 19546501 -132990758 - ORR1D1 LTR MaLR -4 370 1 5 734 872 250 145 4 chr5 19546570 19546811 -132990448 - Lx8 LINE L1 -189 7284 7010 5 734 417 20 0 0 chr5 19546815 19546865 -132990394 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 734 234 222 0 0 chr5 19546902 19546956 -132990303 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 5 734 275 177 16 0 chr5 19546986 19547048 -132990211 - L1MC1 LINE L1 -932 5214 5152 5 734 616 305 129 64 chr5 19547354 19548040 -132989219 - L1MA9 LINE L1 -83 6229 5506 5 734 1923 35 0 0 chr5 19548040 19548269 -132988990 - L1Md_T LINE L1 -1 6581 6353 6 734 532 330 42 77 chr5 19548269 19548457 -132988802 - L1MA9 LINE L1 -786 5505 5329 5 734 486 172 0 0 chr5 19548467 19548566 -132988693 + CT-rich Low_complexity Low_complexity 1 99 0 6 734 3605 166 98 83 chr5 19548690 19549531 -132987728 - RMER19B LTR ERVK -49 853 1 6 734 332 246 57 98 chr5 19549567 19549761 -132987498 + L1MD LINE L1 4150 4335 -1811 6 734 183 162 0 0 chr5 19550064 19550101 -132987158 + T-rich Low_complexity Low_complexity 1 37 0 6 734 399 343 76 4 chr5 19550886 19551123 -132986136 - MIR SINE MIR -2 260 7 6 734 373 301 143 24 chr5 19551777 19551903 -132985356 - B1_Mur2 SINE Alu -7 142 2 6 734 310 287 182 7 chr5 19553754 19553891 -132983368 + MER5A1 DNA MER1_type 1 161 -5 6 734 235 387 0 0 chr5 19554042 19554117 -132983142 + ID4_ SINE ID 3 77 -6 6 734 298 315 118 40 chr5 19554403 19554631 -132982628 + MARNA DNA Mariner 176 421 -165 6 734 360 241 21 181 chr5 19556960 19557153 -132980106 - RSINE1 SINE B4 0 165 4 7 734 1475 161 77 62 chr5 19557728 19558052 -132979207 + ORR1A4 LTR MaLR 1 329 0 7 734 234 231 0 0 chr5 19558663 19558715 -132978544 + C-rich Low_complexity Low_complexity 1 52 0 7 734 685 98 0 0 chr5 19559842 19559934 -132977325 + B1_Mus1 SINE Alu 1 92 -56 7 734 378 317 34 47 chr5 19561183 19561332 -132975927 + B4A SINE B4 77 223 -69 7 734 348 148 0 0 chr5 19561496 19561557 -132975702 + (TGAA)n Simple_repeat Simple_repeat 4 64 0 7 734 181 140 23 23 chr5 19561684 19561728 -132975531 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 734 300 284 14 0 chr5 19561849 19561923 -132975336 - ID4_ SINE ID -7 76 2 7 734 530 276 0 0 chr5 19562069 19562185 -132975074 + 7SLRNA srpRNA srpRNA 11 126 -188 7 734 586 280 24 60 chr5 19564383 19564405 -132972854 - RSINE1 SINE B4 -2 163 149 7 734 462 18 0 0 chr5 19564405 19564460 -132972799 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 734 586 280 24 60 chr5 19564460 19564604 -132972655 - RSINE1 SINE B4 -17 148 3 7 734 53 17 0 0 chr5 19565000 19565060 -132972199 + AT_rich Low_complexity Low_complexity 1 60 0 8 734 6636 135 22 31 chr5 19565149 19566909 -132970350 + Lx LINE L1 4931 6654 0 8 734 201 178 0 0 chr5 19567213 19567258 -132970001 + (CTA)n Simple_repeat Simple_repeat 1 45 0 8 734 318 249 106 2 chr5 19567258 19567355 -132969904 - B1_Mm SINE Alu -2 118 13 8 734 552 350 147 15 chr5 19567868 19568482 -132968777 + HAL1 LINE L1 1616 2310 -197 8 734 307 145 29 0 chr5 19568554 19568623 -132968636 + (TG)n Simple_repeat Simple_repeat 1 71 0 8 734 348 127 0 0 chr5 19570837 19570892 -132966367 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 734 2110 231 37 39 chr5 19572881 19573400 -132963859 - RLTR11A LTR ERVK 0 528 11 8 734 233 302 115 8 chr5 19575451 19575581 -132961678 - Lx9 LINE L1 -1132 6512 6369 8 734 580 208 100 7 chr5 19575790 19575940 -132961319 - Lx9 LINE L1 -1676 5968 5805 8 734 348 43 0 0 chr5 19577280 19577326 -132959933 + (TTAG)n Simple_repeat Simple_repeat 3 48 0 9 734 450 49 0 0 chr5 19577984 19578045 -132959214 + (CATA)n Simple_repeat Simple_repeat 2 62 0 9 734 21 0 0 0 chr5 19579255 19579276 -132957983 + AT_rich Low_complexity Low_complexity 1 21 0 9 734 521 279 68 44 chr5 19579371 19579577 -132957682 + B3 SINE B2 6 216 0 9 734 1355 153 4 24 chr5 19580262 19580510 -132956749 - Lx5 LINE L1 -476 6574 6332 9 734 1838 213 20 33 chr5 19580512 19580968 -132956291 + Lx4B LINE L1 6589 7038 -20 9 734 405 0 0 0 chr5 19580969 19581014 -132956245 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 9 734 25 31 0 0 chr5 19581129 19581161 -132956098 + AT_rich Low_complexity Low_complexity 1 32 0 9 734 1369 78 37 0 chr5 19581399 19581590 -132955669 + L1_Mus1 LINE L1 6370 6567 0 9 734 2951 83 7 28 chr5 19581685 19582118 -132955141 - Lx3_Mus LINE L1 -11 6998 6575 9 734 210 37 0 0 chr5 19582118 19582145 -132955114 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 734 649 213 5 5 chr5 19582430 19582842 -132954417 + (TG)n Simple_repeat Simple_repeat 1 412 0 1 734 390 134 0 0 chr5 19582842 19582909 -132954350 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 734 386 239 0 0 chr5 19582910 19583002 -132954257 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 734 315 264 124 36 chr5 19583002 19583195 -132954064 - B3 SINE B2 -6 210 1 1 734 1078 270 74 49 chr5 19585432 19585961 -132951298 - Lx8 LINE L1 -2 7471 6930 1 734 635 274 82 65 chr5 19586144 19586437 -132950822 - Lx8 LINE L1 -581 6892 6595 1 734 230 265 115 100 chr5 19587139 19587269 -132949990 - MER103 DNA DNA -7 159 28 1 734 189 0 0 0 chr5 19588769 19588790 -132948469 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 734 483 18 0 0 chr5 19589421 19589477 -132947782 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 734 315 0 0 0 chr5 19589477 19589511 -132947748 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 734 203 180 0 39 chr5 19589874 19589895 -132947364 + polypyrimidine Low_complexity Low_complexity 32 50 0 1 734 626 37 0 12 chr5 19589895 19589977 -132947282 + (TCC)n Simple_repeat Simple_repeat 2 82 0 1 734 203 180 0 39 chr5 19589977 19590007 -132947252 + polypyrimidine Low_complexity Low_complexity 2 31 0 1 734 23 0 0 0 chr5 19590232 19590255 -132947004 + AT_rich Low_complexity Low_complexity 1 23 0 1 734 22 35 0 0 chr5 19591386 19591415 -132945844 + AT_rich Low_complexity Low_complexity 1 29 0 1 734 306 0 0 0 chr5 19591452 19591486 -132945773 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 734 528 91 0 0 chr5 19591486 19591574 -132945685 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 734 272 318 172 0 chr5 19591880 19592072 -132945187 + L2a LINE L2 3199 3423 -3 1 734 22 35 0 0 chr5 19592922 19592951 -132944308 + AT_rich Low_complexity Low_complexity 1 29 0 1 734 21 36 0 0 chr5 19594779 19594807 -132942452 + AT_rich Low_complexity Low_complexity 1 28 0 1 734 23 0 0 0 chr5 19594868 19594891 -132942368 + AT_rich Low_complexity Low_complexity 1 23 0 1 734 26 30 0 0 chr5 19595100 19595133 -132942126 + AT_rich Low_complexity Low_complexity 1 33 0 1 734 606 244 35 89 chr5 19595160 19595417 -132941842 - Lx6 LINE L1 -52 7408 7166 1 734 473 331 58 0 chr5 19596144 19596298 -132940961 + B3 SINE B2 16 178 -38 1 734 1194 90 0 0 chr5 19596306 19596507 -132940752 + (CA)n Simple_repeat Simple_repeat 1 201 0 1 734 211 244 204 23 chr5 19596850 19596938 -132940321 - B2_Mm2 SINE B2 -87 108 5 1 734 2842 255 94 21 chr5 19596966 19598124 -132939135 - RMER1B Other Other -12 1054 36 1 734 780 87 29 0 chr5 19598432 19598536 -132938723 + U6 snRNA snRNA 1 107 0 1 734 7238 79 3 0 chr5 19598536 19599560 -132937699 + L1_Mus2 LINE L1 5540 6566 0 1 734 950 80 7 0 chr5 19600992 19601129 -132936130 + (TCCC)n Simple_repeat Simple_repeat 2 139 0 1 734 240 35 0 0 chr5 19602139 19602168 -132935091 + (A)n Simple_repeat Simple_repeat 1 29 0 1 734 1234 154 304 30 chr5 19603880 19604242 -132933017 + RMER6B LTR ERVK 1 461 0 1 734 321 293 86 0 chr5 19605149 19605265 -132931994 + MER58A DNA MER1_type 29 154 -70 1 734 630 257 35 0 chr5 19605317 19605461 -132931798 + B1_Mur2 SINE Alu 1 149 0 1 734 213 258 0 82 chr5 19605655 19605668 -132931591 + (CATATA)n Simple_repeat Simple_repeat 1 13 0 1 734 240 35 0 0 chr5 19605668 19605697 -132931562 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 734 213 258 0 82 chr5 19605697 19605780 -132931479 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 1 734 384 22 0 0 chr5 19605796 19605841 -132931418 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 734 992 298 108 24 chr5 19605841 19606537 -132930722 - L1MA4A LINE L1 -23 6280 5523 1 734 1446 57 0 11 chr5 19606537 19606715 -132930544 - B2_Mm1a SINE B2 -15 178 3 1 734 992 298 108 24 chr5 19606715 19606859 -132930400 - L1MA4A LINE L1 -781 5522 5369 1 734 354 316 71 44 chr5 19606935 19607003 -132930256 - L1MA4A LINE L1 -813 5330 5253 1 734 1018 59 82 0 chr5 19607003 19607138 -132930121 - B1_Mm SINE Alu 0 147 2 1 734 354 316 71 44 chr5 19607138 19607251 -132930008 - L1MA4A LINE L1 -891 5252 5144 1 734 699 367 20 48 chr5 19607962 19608254 -132929005 - B4A SINE B4 0 292 9 1 734 224 333 0 0 chr5 19608302 19608350 -132928909 + ID4_ SINE ID 26 73 -10 1 734 342 258 22 22 chr5 19608354 19608445 -132928814 + ID_B1 SINE B4 99 189 -35 1 734 249 329 0 0 chr5 19610570 19610643 -132926616 + MIR3 SINE MIR 109 181 -27 1 734 220 264 0 59 chr5 19610807 19610875 -132926384 + ID4 SINE ID 4 67 -85 1 734 465 306 0 11 chr5 19611675 19611857 -132925402 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 734 257 320 6 39 chr5 19611767 19611949 -132925310 + (TATG)n Simple_repeat Simple_repeat 3 178 0 1 734 246 182 0 0 chr5 19611971 19612037 -132925222 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 734 316 146 0 0 chr5 19612038 19612086 -132925173 - HAL1-3A_ME LINE L1 -841 2017 1970 1 734 231 257 0 0 chr5 19612117 19612218 -132925041 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 734 224 271 0 6 chr5 19612272 19612443 -132924816 + (TG)n Simple_repeat Simple_repeat 1 170 0 1 734 428 312 69 17 chr5 19613020 19613310 -132923949 + L1MB3 LINE L1 5478 5782 -401 1 734 384 308 110 18 chr5 19613960 19614188 -132923071 + L1MB3 LINE L1 5933 6181 -2 1 734 250 376 103 23 chr5 19615387 19615648 -132921611 - LTR88c LTR Genie? -580 282 1 1 734 461 184 33 99 chr5 19616908 19617029 -132920230 + PB1D10 SINE Alu 2 114 -3 1 734 1233 131 0 6 chr5 19617115 19617459 -132919800 + (TGGA)n Simple_repeat Simple_repeat 1 342 0 1 734 296 298 50 50 chr5 19617459 19617579 -132919680 - MTEa LTR MaLR -259 120 1 1 734 336 118 0 0 chr5 19619120 19619171 -132918088 - HAL1-3A_ME LINE L1 -832 2026 1976 1 734 509 202 5 0 chr5 19619176 19619406 -132917853 + (TG)n Simple_repeat Simple_repeat 1 231 0 1 734 404 341 58 58 chr5 19620420 19620678 -132916581 - MER34A1 LTR ERV1 -272 315 58 1 734 519 230 80 22 chr5 19621355 19621493 -132915766 + B1_Mus1 SINE Alu 3 148 0 1 734 2447 141 35 18 chr5 19621503 19621958 -132915301 + Lx4B LINE L1 6585 7047 -11 1 734 185 191 43 87 chr5 19622892 19622961 -132914298 - L2a LINE L2 -14 3412 3347 1 734 545 125 23 0 chr5 19623427 19623515 -132913744 - Lx2 LINE L1 -221 6776 6687 1 734 4313 88 16 6 chr5 19623511 19624327 -132912932 - Lx LINE L1 -662 5992 5164 1 734 1202 102 33 37 chr5 19624328 19624542 -132912717 + Lx LINE L1 6442 6654 0 1 734 393 22 0 0 chr5 19624889 19624935 -132912324 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 734 288 281 137 0 chr5 19625008 19625154 -132912105 - L1MC3 LINE L1 -121 7664 7499 1 734 232 75 75 0 chr5 19625402 19625442 -132911817 + Lx8 LINE L1 7414 7456 -17 1 734 730 295 38 36 chr5 19625523 19626047 -132911212 - L1M2 LINE L1 -1327 4816 4292 1 734 25 0 0 0 chr5 19626098 19626123 -132911136 + AT_rich Low_complexity Low_complexity 1 25 0 1 734 517 306 27 31 chr5 19626236 19626492 -132910767 + Lx7 LINE L1 7128 7382 -314 1 734 198 103 0 0 chr5 19626499 19626528 -132910731 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1 734 207 218 36 0 chr5 19626549 19626604 -132910655 + GA-rich Low_complexity Low_complexity 5 61 0 1 734 36239 31 0 0 chr5 19627030 19633434 -132903825 - L1Md_T LINE L1 0 6585 85 1 734 279 230 27 0 chr5 19633450 19633524 -132903735 - L1MC3 LINE L1 -334 7661 7586 1 734 240 111 0 0 chr5 19633661 19633697 -132903562 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1 734 1329 69 6 17 chr5 19633702 19633879 -132903380 - B2_Mm1t SINE B2 -18 175 1 1 734 339 306 35 96 chr5 19633879 19634072 -132903187 - L1MC3 LINE L1 -554 7231 7050 1 734 666 275 41 15 chr5 19634283 19634479 -132902780 + B3 SINE B2 1 201 -15 1 734 2315 79 3 14 chr5 19635232 19635578 -132901681 + L1Md_F2 LINE L1 6219 6560 -22 1 734 777 135 0 0 chr5 19635578 19635704 -132901555 + (GGA)n Simple_repeat Simple_repeat 2 127 0 1 734 534 309 138 52 chr5 19636772 19637294 -132899965 + HAL1 LINE L1 1398 1964 -543 1 734 890 76 0 51 chr5 19637628 19637766 -132899493 + L1_Mus1 LINE L1 6435 6565 -2 1 734 22 80 0 0 chr5 19637766 19637816 -132899443 + AT_rich Low_complexity Low_complexity 1 50 0 1 734 312 304 36 49 chr5 19637816 19637937 -132899322 + B3A SINE B2 48 164 -52 1 734 441 0 0 0 chr5 19637937 19637986 -132899273 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 734 341 22 22 0 chr5 19637986 19638031 -132899228 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 734 274 322 32 95 chr5 19638031 19638066 -132899193 + B3 SINE B2 165 194 -22 1 734 832 267 5 16 chr5 19638234 19638424 -132898835 + B3 SINE B2 29 216 0 1 734 244 313 24 0 chr5 19638493 19638576 -132898683 - MLT1H2 LTR MaLR 0 489 405 1 734 892 216 33 9 chr5 19638577 19638787 -132898472 + B3 SINE B2 2 216 0 1 734 23 0 0 0 chr5 19641736 19641759 -132895500 + AT_rich Low_complexity Low_complexity 1 23 0 1 734 23 0 0 0 chr5 19642129 19642152 -132895107 + AT_rich Low_complexity Low_complexity 1 23 0 1 734 273 256 12 47 chr5 19642896 19642982 -132894277 - MIRc SINE MIR -115 153 71 1 734 288 375 29 0 chr5 19643383 19643487 -132893772 + B4 SINE B4 2 108 -184 1 734 1462 154 19 34 chr5 19644006 19644269 -132892990 - Lx3A LINE L1 -7 6974 6716 1 734 1489 298 49 5 chr5 19644271 19644739 -132892520 - MT2A LTR ERVL -34 550 1 1 734 186 43 0 0 chr5 19647161 19647184 -132890075 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 1 734 432 82 0 0 chr5 19648259 19648320 -132888939 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 734 2799 167 16 25 chr5 19648402 19648917 -132888342 - RLTR20B3 LTR ERVK -67 510 1 1 734 251 207 0 0 chr5 19648917 19648975 -132888284 + Lx9 LINE L1 7585 7642 -2 1 734 2036 210 22 13 chr5 19649079 19649543 -132887716 - Lx4B LINE L1 0 7058 6591 1 734 1103 79 7 0 chr5 19649983 19650122 -132887137 + B1_Mus1 SINE Alu 2 141 -7 2 734 306 0 0 0 chr5 19650126 19650160 -132887099 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 734 25 51 0 0 chr5 19650342 19650381 -132886878 + AT_rich Low_complexity Low_complexity 1 39 0 2 734 2039 308 86 46 chr5 19650488 19651813 -132885446 - Lx8 LINE L1 -116 7357 5993 2 734 32 57 0 0 chr5 19653263 19653316 -132883943 + AT_rich Low_complexity Low_complexity 1 53 0 2 734 435 125 0 0 chr5 19653381 19653453 -132883806 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 734 197 345 40 105 chr5 19655145 19655425 -132881834 + MIR3 SINE MIR 2 262 -6 2 734 216 223 43 43 chr5 19655619 19655736 -132881523 + (TATAA)n Simple_repeat Simple_repeat 3 119 0 2 734 226 176 20 0 chr5 19655839 19655890 -132881369 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 734 26 0 0 0 chr5 19656478 19656504 -132880755 + AT_rich Low_complexity Low_complexity 1 26 0 2 734 270 0 0 0 chr5 19657519 19657549 -132879710 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 734 313 267 71 0 chr5 19657790 19657891 -132879368 + MIRb SINE MIR 31 147 -121 2 734 225 303 104 88 chr5 19659709 19659901 -132877358 - MIRb SINE MIR -2 266 72 2 734 1106 275 76 12 chr5 19660282 19660583 -132876676 + MTE2b LTR MaLR 3 314 -65 2 734 378 0 0 0 chr5 19660583 19660625 -132876634 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 734 1106 275 76 12 chr5 19660625 19660665 -132876594 + MTE2b LTR MaLR 315 365 -14 2 735 388 375 59 52 chr5 19661030 19661300 -132875959 - L4 LINE RTE -549 1480 1209 2 735 355 309 122 58 chr5 19661350 19661693 -132875566 - MLT1A0 LTR MaLR 0 365 1 2 735 292 334 297 60 chr5 19661947 19662339 -132874920 - MER90a LTR ERV1 -17 597 113 2 735 200 312 8 104 chr5 19662892 19663017 -132874242 + L3 LINE CR1 4217 4329 -160 2 735 233 120 0 39 chr5 19664293 19664345 -132872914 + L1_Mus1 LINE L1 215 264 -6352 2 735 859 103 0 0 chr5 19664321 19664438 -132872821 + L1_Mus1 LINE L1 675 791 -5825 2 735 1061 82 25 6 chr5 19664436 19664596 -132872663 + MusHAL1 LINE L1 520 682 -2030 2 735 20056 97 10 6 chr5 19664570 19668383 -132868876 + L1_Mus1 LINE L1 2752 6567 0 2 735 24 0 0 0 chr5 19668383 19668407 -132868852 + AT_rich Low_complexity Low_complexity 1 24 0 2 735 247 273 32 64 chr5 19669168 19669262 -132867997 - MER5A1 DNA MER1_type -8 158 68 2 735 566 366 72 21 chr5 19669486 19669765 -132867494 - LFSINE_Vert SINE SINE -153 306 14 2 735 450 0 0 0 chr5 19669893 19669943 -132867316 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 735 1389 247 3 22 chr5 19670090 19670409 -132866850 - Lx9 LINE L1 -793 6851 6539 2 735 298 318 97 29 chr5 19671972 19672147 -132865112 + Cheshire DNA MER1_type 39 225 -2195 2 735 451 72 14 0 chr5 19672315 19672384 -132864875 + L1_Mm LINE L1 5250 5319 -564 2 735 7199 38 6 0 chr5 19672384 19673243 -132864016 + L1Md_F2 LINE L1 5719 6582 0 2 735 245 301 107 0 chr5 19673350 19673453 -132863806 - MER5A DNA MER1_type -69 120 7 2 735 6570 139 2 5 chr5 19673460 19674580 -132862679 - Lx LINE L1 -389 5494 4378 2 735 6200 140 14 25 chr5 19674593 19675760 -132861499 + Lx LINE L1 5495 6647 -7 2 735 646 68 42 8 chr5 19676641 19676759 -132860500 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 2 735 3152 160 28 34 chr5 19676791 19676893 -132860366 - RLTR20A2 LTR ERVK 0 578 492 2 735 486 0 0 0 chr5 19676893 19676947 -132860312 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 735 3152 160 28 34 chr5 19676947 19677426 -132859833 - RLTR20A2 LTR ERVK -87 491 3 2 735 393 312 48 12 chr5 19677442 19677599 -132859660 - L1MA4A LINE L1 -364 5936 5784 2 735 429 70 0 0 chr5 19677599 19677656 -132859603 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 735 393 300 85 16 chr5 19677656 19677837 -132859422 - L1MA4A LINE L1 -517 5783 5587 2 735 761 284 95 55 chr5 19677862 19678759 -132858500 - L1MA4A LINE L1 -799 5492 4564 2 735 24 0 0 0 chr5 19678810 19678834 -132858425 + AT_rich Low_complexity Low_complexity 1 24 0 2 735 287 274 100 58 chr5 19678935 19679055 -132858204 + MTE2a LTR MaLR 128 252 -127 2 735 348 256 96 54 chr5 19679055 19679390 -132857869 - L1MA4A LINE L1 -2940 3203 2844 2 735 422 309 65 36 chr5 19679464 19679850 -132857409 + L1M2 LINE L1 2162 2558 -4291 2 735 315 358 13 0 chr5 19680248 19680399 -132856860 - MER33 DNA MER1_type -141 183 31 2 735 3092 118 61 10 chr5 19680731 19681220 -132856039 - Lx3A LINE L1 -1 6980 6467 2 735 218 329 61 0 chr5 19682058 19682140 -132855119 - MIR3 SINE MIR -10 198 112 2 735 201 371 20 20 chr5 19682109 19682208 -132855051 - MIRm SINE MIR -128 148 50 2 735 588 14 0 0 chr5 19682209 19682278 -132854981 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 735 281 219 40 27 chr5 19683244 19683319 -132853940 + B1_Mus1 SINE Alu 7 82 -66 2 735 375 322 41 0 chr5 19683256 19683377 -132853882 + ID_B1 SINE B4 99 224 0 2 735 4314 112 9 2 chr5 19683648 19684285 -132852974 + L1_Mus4 LINE L1 5988 6629 -7 2 735 4143 64 0 0 chr5 19684898 19685414 -132851845 - L1_Mus1 LINE L1 0 6567 6052 2 735 3120 105 17 4 chr5 19685414 19685894 -132851365 - L1_Mm LINE L1 -736 5147 4662 2 735 352 75 17 0 chr5 19685895 19685963 -132851296 + L1_Mm LINE L1 4302 4370 -1510 2 735 432 0 0 0 chr5 19686907 19686955 -132850304 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 735 330 289 43 26 chr5 19688555 19688672 -132848587 - PB1 SINE Alu -8 119 1 2 735 3466 79 35 4 chr5 19689084 19689565 -132847694 - L1_Mus4 LINE L1 0 6636 6141 2 735 2068 123 41 41 chr5 19689567 19689932 -132847327 - IAPLTR1_Mm LTR ERVK -2 365 1 2 735 54159 19 5 6 chr5 19689932 19696408 -132840851 - IAPEz-int LTR ERVK 0 6481 8 2 735 2047 128 41 41 chr5 19696408 19696775 -132840484 - IAPLTR1_Mm LTR ERVK 0 367 1 2 735 4105 57 0 4 chr5 19696775 19697325 -132839934 - L1_Mus4 LINE L1 -490 6146 5599 2 735 235 91 0 0 chr5 19697321 19697354 -132839905 + L1_Mus4 LINE L1 5616 5648 -988 2 735 22 0 0 0 chr5 19697643 19697665 -132839594 + AT_rich Low_complexity Low_complexity 1 22 0 2 735 255 343 132 72 chr5 19698459 19698861 -132838398 - MLT2B3 LTR ERVL -12 542 117 2 735 576 0 0 0 chr5 19700145 19700209 -132837050 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 2 735 186 250 0 0 chr5 19701135 19701191 -132836068 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 735 906 318 15 8 chr5 19701217 19701483 -132835776 - B4A SINE B4 -16 276 9 2 735 189 0 0 0 chr5 19701525 19701546 -132835713 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 735 438 212 76 49 chr5 19702150 19702294 -132834965 - B1F SINE Alu -1 148 1 2 735 239 269 0 7 chr5 19704936 19705078 -132832181 + (CA)n Simple_repeat Simple_repeat 2 142 0 2 735 3142 66 2 0 chr5 19705224 19705619 -132831640 + MTA_Mm LTR MaLR 1 396 0 2 735 22 0 0 0 chr5 19706046 19706068 -132831191 + AT_rich Low_complexity Low_complexity 1 22 0 2 735 23 33 0 0 chr5 19707021 19707051 -132830208 + AT_rich Low_complexity Low_complexity 1 30 0 2 735 1103 208 252 97 chr5 19707370 19707781 -132829478 + MT2A LTR ERVL 8 489 -44 2 735 595 0 27 0 chr5 19707781 19707856 -132829403 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 2 735 1103 208 252 97 chr5 19707856 19707897 -132829362 + MT2A LTR ERVL 490 530 -3 2 735 7688 187 39 49 chr5 19707899 19709200 -132828059 + MERVL_2A-int LTR ERVL 1 1287 -4474 2 735 2953 82 30 23 chr5 19709200 19709635 -132827624 - L1_Mus3 LINE L1 -4 6634 6197 2 735 7688 187 39 49 chr5 19709635 19710099 -132827160 + MERVL_2A-int LTR ERVL 1288 1747 -4014 2 735 3712 130 26 122 chr5 19710099 19710870 -132826389 - RMER6A LTR ERVK 0 756 60 2 735 316 173 13 51 chr5 19710888 19710967 -132826292 + MERVL_2A-int LTR ERVL 1743 1818 -3943 2 735 664 179 189 6 chr5 19710966 19711146 -132826113 - MERVL_2A-int LTR ERVL -2345 3416 3204 2 735 4568 192 42 46 chr5 19711163 19712223 -132825036 + MERVL_2A-int LTR ERVL 1821 2875 -2886 2 735 237 231 25 25 chr5 19712223 19712303 -132824956 - RMER2 LTR ERV1 0 567 488 2 735 4348 204 50 25 chr5 19712303 19712888 -132824371 + MERVL_2A-int LTR ERVL 3488 4114 -1647 2 735 3007 33 0 6 chr5 19712888 19713251 -132824008 + L1Md_T LINE L1 6222 6582 0 2 735 4348 204 50 25 chr5 19713251 19713612 -132823647 + MERVL_2A-int LTR ERVL 4115 4457 -1304 2 735 340 174 9 124 chr5 19713612 19713717 -132823542 + MERVL_2A-int LTR ERVL 5522 5614 -147 2 735 238 246 56 42 chr5 19713720 19713792 -132823467 + ORR1A3-int LTR MaLR 552 624 -1339 2 735 639 209 7 0 chr5 19713792 19713931 -132823328 + MERVL_2A-int LTR ERVL 5621 5760 -1 2 735 963 231 166 142 chr5 19713935 19714455 -132822804 + MT2A LTR ERVL 1 533 0 2 735 5151 78 0 0 chr5 19715130 19715851 -132821408 - L1Md_F2 LINE L1 -510 5373 4653 2 735 1748 33 0 0 chr5 19715849 19716061 -132821198 + L1Md_F2 LINE L1 5375 5586 -297 2 735 7842 49 14 6 chr5 19716061 19717038 -132820221 + L1Md_F2 LINE L1 5587 6571 -11 2 735 410 284 46 0 chr5 19717492 19717601 -132819658 + MLT1C LTR MaLR 51 164 -303 2 735 759 69 0 0 chr5 19717745 19717847 -132819412 + (TG)n Simple_repeat Simple_repeat 2 103 0 2 735 245 366 129 35 chr5 19718455 19718687 -132818572 + LTR79 LTR ERVL 265 518 -9 2 735 429 20 0 0 chr5 19719113 19719163 -132818096 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 735 439 324 70 21 chr5 19719165 19719307 -132817952 - RSINE1 SINE B4 -12 153 5 2 735 472 332 61 31 chr5 19720603 19720864 -132816395 - MLT1D LTR MaLR -236 269 1 2 735 21 0 0 0 chr5 19720917 19720938 -132816321 + AT_rich Low_complexity Low_complexity 1 21 0 2 735 895 116 20 20 chr5 19721620 19721769 -132815490 - URR1A DNA MER1_type 0 226 78 2 735 272 276 57 20 chr5 19722286 19722442 -132814817 - L1MA5 LINE L1 -9 6291 6122 2 735 1082 213 34 109 chr5 19723667 19724088 -132813171 - ORR1D1 LTR MaLR -10 360 3 2 735 23 33 0 0 chr5 19725563 19725593 -132811666 + AT_rich Low_complexity Low_complexity 1 30 0 2 735 642 125 0 0 chr5 19725593 19725705 -132811554 + (TG)n Simple_repeat Simple_repeat 2 113 0 2 735 657 265 8 0 chr5 19725716 19725848 -132811411 - B3A SINE B2 -57 141 9 2 735 1854 261 133 36 chr5 19725995 19726620 -132810639 - Lx6 LINE L1 -27 7433 6759 2 735 329 22 44 0 chr5 19726620 19726665 -132810594 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 2 735 1854 261 133 36 chr5 19726665 19726732 -132810527 - Lx6 LINE L1 -702 6758 6674 2 735 2541 209 87 14 chr5 19726755 19727405 -132809854 - Lx6 LINE L1 -1200 6260 5587 2 735 207 0 0 0 chr5 19728197 19728220 -132809039 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 735 313 292 11 11 chr5 19729586 19729676 -132807583 - BC1_Mm scRNA scRNA -60 92 3 2 735 294 267 53 84 chr5 19730141 19730272 -132806987 + MIRm SINE MIR 51 177 -99 2 735 201 318 0 0 chr5 19731770 19731833 -132805426 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 735 1408 241 75 18 chr5 19732349 19732734 -132804525 + MTD LTR MaLR 13 419 0 2 735 205 229 70 14 chr5 19733402 19733473 -132803786 - MER5A DNA MER1_type -108 81 7 2 735 186 340 24 102 chr5 19734059 19734226 -132803033 - L3 LINE CR1 -1327 3162 3009 2 735 24 0 0 0 chr5 19734809 19734833 -132802426 + AT_rich Low_complexity Low_complexity 1 24 0 2 735 247 277 53 58 chr5 19736182 19736370 -132800889 - L1MEg1 LINE L1 -5513 722 536 2 735 555 43 0 0 chr5 19736753 19736823 -132800436 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 735 441 271 80 91 chr5 19737085 19737188 -132800071 - RMER30 DNA MER1_type -7 195 94 2 735 204 40 0 0 chr5 19737188 19737213 -132800046 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 735 441 271 80 91 chr5 19737213 19737296 -132799963 - RMER30 DNA MER1_type -109 93 11 2 735 274 309 113 31 chr5 19737405 19737502 -132799757 - PB1D10 SINE Alu -12 105 1 3 735 958 307 31 38 chr5 19738227 19738518 -132798741 + B4A SINE B4 4 292 0 3 735 230 343 10 0 chr5 19738530 19738629 -132798630 + (CA)n Simple_repeat Simple_repeat 1 100 0 3 735 416 324 124 43 chr5 19739680 19740164 -132797095 - L1MDa LINE L1 -743 5794 5272 3 735 389 275 83 43 chr5 19740282 19740677 -132796582 - L1MDa LINE L1 -1433 5104 4694 3 735 251 215 61 83 chr5 19740819 19740951 -132796308 - L1MDa LINE L1 -2338 4199 4071 3 735 744 223 250 10 chr5 19741131 19741457 -132795802 - MTD LTR MaLR -14 405 9 3 735 244 303 96 63 chr5 19741925 19742260 -132794999 - L1MDa LINE L1 -5330 1210 865 3 735 251 287 94 14 chr5 19742627 19742765 -132794494 - L1MDa LINE L1 -6451 182 34 3 735 31 26 0 0 chr5 19743332 19743370 -132793889 + AT_rich Low_complexity Low_complexity 1 38 0 3 735 666 37 0 0 chr5 19744092 19744173 -132793086 + (GGA)n Simple_repeat Simple_repeat 2 82 0 3 735 645 105 0 0 chr5 19744202 19744297 -132792962 + (TTG)n Simple_repeat Simple_repeat 3 97 0 3 735 1298 288 79 22 chr5 19744880 19745235 -132792024 - MTEb LTR MaLR 0 379 5 3 735 1143 74 0 7 chr5 19745602 19745751 -132791508 + B1_Mus1 SINE Alu 1 148 0 3 735 494 15 46 0 chr5 19745760 19745825 -132791434 + (GAAAA)n Simple_repeat Simple_repeat 2 69 0 3 735 396 0 0 0 chr5 19746321 19746365 -132790894 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 735 612 303 43 5 chr5 19746935 19747121 -132790138 + B3 SINE B2 17 209 -7 3 735 394 276 54 2 chr5 19747736 19747918 -132789341 + RMER1C Other Other 97 198 -1144 3 735 2330 260 24 79 chr5 19748270 19748781 -132788478 + RMER1C Other Other 491 1004 -338 3 735 194 0 39 0 chr5 19748781 19748807 -132788452 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 735 2330 260 24 79 chr5 19748807 19748828 -132788431 + RMER1C Other Other 1005 1024 -318 3 735 3511 117 86 11 chr5 19748828 19749388 -132787871 + Lx LINE L1 6038 6639 -15 3 735 266 0 0 29 chr5 19749388 19749423 -132787836 + (TAA)n Simple_repeat Simple_repeat 2 35 0 3 735 2330 260 24 79 chr5 19749423 19749789 -132787470 + RMER1C Other Other 1025 1341 -1 3 735 320 115 19 0 chr5 19750873 19750925 -132786334 - RMER6A LTR ERVK -596 160 108 3 735 1134 264 68 107 chr5 19751131 19751513 -132785746 - MTE2b LTR MaLR -12 367 1 3 735 237 235 247 0 chr5 19751782 19751863 -132785396 - ORR1A4 LTR MaLR -5 374 274 3 735 823 169 19 13 chr5 19752061 19752207 -132785052 - ORR1A4 LTR MaLR -6 323 177 3 735 1037 131 54 0 chr5 19752207 19752254 -132785005 + RMER6A LTR ERVK 1 50 -706 3 735 789 11 0 0 chr5 19752254 19752344 -132784915 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 3 735 1037 131 54 0 chr5 19752344 19752464 -132784795 + RMER6A LTR ERVK 51 176 -580 3 735 917 137 13 60 chr5 19752470 19752695 -132784564 - ORR1A4 LTR MaLR -169 225 1 3 735 201 271 0 14 chr5 19753422 19753493 -132783766 + (TA)n Simple_repeat Simple_repeat 1 70 0 3 735 21 36 0 0 chr5 19754900 19754928 -132782331 + AT_rich Low_complexity Low_complexity 1 28 0 3 735 285 75 0 0 chr5 19755631 19755671 -132781588 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 735 315 0 0 0 chr5 19755671 19755705 -132781554 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 735 5526 242 38 25 chr5 19757657 19759096 -132778163 - Lx6 LINE L1 0 7460 6004 3 735 1059 194 151 11 chr5 19759093 19759364 -132777895 + Lx6 LINE L1 5685 5993 -1467 3 735 189 0 0 0 chr5 19759668 19759689 -132777570 + (A)n Simple_repeat Simple_repeat 1 21 0 3 735 214 264 18 36 chr5 19759866 19759921 -132777338 + ID SINE ID 1 54 -170 3 735 1644 193 50 30 chr5 19760213 19760444 -132776815 - Lx6 LINE L1 -5 7455 7217 3 735 5763 118 42 7 chr5 19760444 19761319 -132775940 + RMER17A2 LTR ERVK 1 906 0 3 735 1644 205 220 18 chr5 19761319 19761598 -132775661 - Lx6 LINE L1 -244 7216 6884 3 735 180 137 39 19 chr5 19761598 19761650 -132775609 + CT-rich Low_complexity Low_complexity 1 53 0 3 735 873 119 0 0 chr5 19761651 19761802 -132775457 + (TG)n Simple_repeat Simple_repeat 2 152 0 3 735 550 295 132 0 chr5 19762889 19763140 -132774119 - B4A SINE B4 -8 284 1 3 735 333 62 0 0 chr5 19763966 19764014 -132773245 + (TC)n Simple_repeat Simple_repeat 2 49 0 3 735 884 98 8 0 chr5 19764026 19764159 -132773100 + (GA)n Simple_repeat Simple_repeat 1 134 0 3 735 186 0 0 81 chr5 19764248 19764285 -132772974 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 3 735 497 252 87 0 chr5 19764777 19764904 -132772355 - RMER20B LTR ERVK -310 317 180 3 735 290 70 53 53 chr5 19765098 19765173 -132772086 + (CAGAGA)n Simple_repeat Simple_repeat 5 79 0 3 735 361 321 59 93 chr5 19765198 19765487 -132771772 - B4 SINE B4 -12 280 2 3 735 279 0 0 0 chr5 19765569 19765600 -132771659 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 735 585 72 0 0 chr5 19766138 19766221 -132771038 + (CA)n Simple_repeat Simple_repeat 1 83 0 3 735 489 110 0 0 chr5 19766252 19766325 -132770934 + (TC)n Simple_repeat Simple_repeat 1 73 0 3 735 380 345 22 33 chr5 19766958 19767138 -132770121 + B3A SINE B2 2 179 -19 3 735 186 43 0 0 chr5 19767154 19767177 -132770082 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 735 21 0 0 0 chr5 19767195 19767216 -132770043 + AT_rich Low_complexity Low_complexity 1 21 0 3 735 441 109 43 43 chr5 19767420 19767463 -132769796 + (CAGAGA)n Simple_repeat Simple_repeat 3 45 0 3 735 902 70 0 14 chr5 19767463 19767608 -132769651 + (GGAAA)n Simple_repeat Simple_repeat 4 146 0 3 735 441 109 43 43 chr5 19767608 19767669 -132769590 + (CAGAGA)n Simple_repeat Simple_repeat 4 67 0 3 735 279 0 0 0 chr5 19767669 19767700 -132769559 + (CGGGA)n Simple_repeat Simple_repeat 1 31 0 3 735 441 109 43 43 chr5 19767700 19767757 -132769502 + (CAGAGA)n Simple_repeat Simple_repeat 2 57 0 3 735 1179 41 29 0 chr5 19767784 19767956 -132769303 + (GGAAA)n Simple_repeat Simple_repeat 3 179 0 3 735 573 15 0 0 chr5 19767956 19768022 -132769237 + (GAAA)n Simple_repeat Simple_repeat 1 66 0 3 735 315 0 0 0 chr5 19768291 19768326 -132768933 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 735 432 0 0 0 chr5 19768326 19768373 -132768886 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 735 359 230 221 0 chr5 19768374 19768487 -132768772 - B3A SINE B2 -51 147 10 3 735 27 29 0 0 chr5 19769325 19769359 -132767900 + AT_rich Low_complexity Low_complexity 1 34 0 3 735 209 213 0 0 chr5 19769841 19769888 -132767371 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 3 735 396 200 62 0 chr5 19770175 19770255 -132767004 + U6 snRNA snRNA 20 104 -3 3 735 186 296 213 16 chr5 19770659 19770786 -132766473 + MIRb SINE MIR 47 198 -70 3 735 181 100 49 24 chr5 19770913 19770954 -132766305 + GA-rich Low_complexity Low_complexity 6 47 0 3 735 337 309 89 16 chr5 19771058 19771250 -132766009 - MIRb SINE MIR -18 244 40 3 735 183 182 0 0 chr5 19771555 19771588 -132765671 + L3 LINE CR1 34 66 -4423 3 735 661 237 244 25 chr5 19771771 19772177 -132765082 - L1MA6 LINE L1 -39 6261 5767 3 735 1139 283 104 45 chr5 19772194 19773008 -132764251 - L1MC2 LINE L1 -15 6329 5468 3 735 226 357 0 0 chr5 19773529 19773599 -132763660 + MIR SINE MIR 177 246 -16 3 735 699 12 0 0 chr5 19773914 19773994 -132763265 + (TTCTC)n Simple_repeat Simple_repeat 5 84 0 3 735 31 26 0 0 chr5 19774481 19774519 -132762740 + AT_rich Low_complexity Low_complexity 1 38 0 3 735 200 116 45 23 chr5 19774639 19774683 -132762576 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 735 432 0 0 0 chr5 19774914 19774962 -132762297 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 3 735 1115 73 0 0 chr5 19774962 19775098 -132762161 - B1_Mm SINE Alu -10 137 2 3 735 278 306 15 110 chr5 19775943 19776079 -132761180 - MIR SINE MIR -77 185 63 3 735 185 80 0 0 chr5 19776881 19776906 -132760353 + L3 LINE CR1 4457 4481 -8 3 735 232 224 99 16 chr5 19777795 19777977 -132759282 + RMER17D LTR ERVK 243 439 -450 3 735 189 0 0 0 chr5 19777977 19777998 -132759261 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 735 2841 77 20 15 chr5 19778743 19779140 -132758119 + L1_Mus2 LINE L1 6168 6566 0 3 735 188 286 31 16 chr5 19779696 19779760 -132757499 - L3 LINE CR1 -2748 1741 1677 3 735 496 295 23 0 chr5 19780008 19780137 -132757122 - RSINE1 SINE B4 -31 134 3 3 735 424 252 18 36 chr5 19780194 19780305 -132756954 + RSINE1 SINE B4 6 114 -51 3 735 351 44 0 0 chr5 19780326 19780371 -132756888 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 3 735 549 180 0 0 chr5 19780372 19780405 -132756854 + polypurine Low_complexity Low_complexity 1 33 0 3 735 589 25 0 25 chr5 19780405 19780486 -132756773 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 3 735 549 180 0 0 chr5 19780486 19780563 -132756696 + polypurine Low_complexity Low_complexity 34 110 0 3 735 25 0 0 0 chr5 19781462 19781487 -132755772 + AT_rich Low_complexity Low_complexity 1 25 0 3 735 270 212 61 0 chr5 19782025 19782091 -132755168 + LTR16A1 LTR ERVL 387 456 0 3 735 3164 46 5 20 chr5 19782368 19782770 -132754489 - MTA_Mm LTR MaLR 0 396 1 3 735 376 317 40 48 chr5 19782873 19782999 -132754260 - MER2 DNA MER2_type -2 343 219 3 735 317 329 82 0 chr5 19783010 19783156 -132754103 - MER2 DNA MER2_type -170 175 18 3 735 21 0 0 0 chr5 19783503 19783524 -132753735 + AT_rich Low_complexity Low_complexity 1 21 0 3 735 1179 144 46 5 chr5 19784399 19784615 -132752644 + URR1A DNA MER1_type 1 225 -1 3 735 1013 99 17 75 chr5 19785262 19785436 -132751823 + B2_Mm1t SINE B2 22 185 -8 3 735 867 20 0 0 chr5 19786592 19786693 -132750566 + (GTTTG)n Simple_repeat Simple_repeat 4 104 0 3 735 314 278 0 14 chr5 19787783 19787856 -132749403 - MER3 DNA MER1_type -97 112 41 3 735 202 73 122 0 chr5 19788485 19788526 -132748733 + (CTTTG)n Simple_repeat Simple_repeat 4 49 0 3 735 1914 51 55 0 chr5 19790696 19790952 -132746307 + L1_Mus1 LINE L1 6298 6567 0 3 735 23 0 0 0 chr5 19790952 19790975 -132746284 + AT_rich Low_complexity Low_complexity 1 23 0 3 735 241 211 0 37 chr5 19791207 19791303 -132745956 + CT-rich Low_complexity Low_complexity 1 92 0 3 736 334 368 0 29 chr5 19792567 19792707 -132744552 - MIRb SINE MIR -18 250 115 3 736 6367 77 42 8 chr5 19793927 19794858 -132742401 - L1_Mus4 LINE L1 -6 6630 5668 3 736 277 244 124 16 chr5 19795331 19795460 -132741799 + MTD LTR MaLR 277 419 0 3 736 612 0 0 0 chr5 19795502 19795570 -132741689 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 4 736 521 346 21 16 chr5 19796352 19796543 -132740716 + B3A SINE B2 1 192 -6 4 736 1229 149 22 5 chr5 19796840 19797063 -132740196 - Lx2 LINE L1 -6 6991 6765 4 736 6658 119 5 36 chr5 19797052 19798477 -132738782 - Lx2 LINE L1 -352 6645 5262 4 736 6163 70 38 15 chr5 19798475 19800023 -132737236 - MusHAL1 LINE L1 -1742 1611 22 4 736 684 139 43 2 chr5 19800023 19800156 -132737103 - ORR1B1 LTR MaLR -62 312 170 4 736 369 0 0 0 chr5 19801041 19801082 -132736177 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 736 365 39 20 0 chr5 19802531 19802582 -132734677 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 736 426 69 0 0 chr5 19802582 19802640 -132734619 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 736 270 213 187 0 chr5 19802642 19802717 -132734542 - Lx7 LINE L1 -395 7301 7213 4 736 214 196 0 21 chr5 19803360 19803407 -132733852 + T-rich Low_complexity Low_complexity 4 49 0 4 736 271 320 46 0 chr5 19804727 19804902 -132732357 - L1MEf LINE L1 -4010 2190 2008 4 736 373 301 0 12 chr5 19806189 19806314 -132730945 - B4A SINE B4 -55 237 118 4 736 468 275 0 44 chr5 19806724 19806838 -132730421 - RSINE1 SINE B4 -13 152 44 4 736 437 275 30 53 chr5 19808202 19808371 -132728888 - CR1_Mam LINE CR1 -1224 980 816 4 736 22 0 0 0 chr5 19809316 19809338 -132727921 + AT_rich Low_complexity Low_complexity 1 22 0 4 736 22 35 0 0 chr5 19810096 19810125 -132727134 + AT_rich Low_complexity Low_complexity 1 29 0 4 736 474 18 0 0 chr5 19810531 19810586 -132726673 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 736 596 299 11 22 chr5 19810592 19810773 -132726486 - B3A SINE B2 -18 180 2 4 736 1454 266 29 27 chr5 19811464 19812310 -132724949 - Lx6 LINE L1 -27 7433 6523 4 736 947 245 67 0 chr5 19812315 19812597 -132724662 - Lx6 LINE L1 -1187 6273 5973 4 736 516 316 126 30 chr5 19812854 19813219 -132724040 - Kanga1 DNA Tc2 -1209 536 137 4 736 308 244 42 26 chr5 19813219 19813318 -132723941 + PB1D9 SINE Alu 46 149 0 4 736 947 276 87 19 chr5 19813393 19813659 -132723600 - B4 SINE B4 -8 284 1 4 736 453 122 0 0 chr5 19813976 19814050 -132723209 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 736 455 301 169 33 chr5 19814529 19814742 -132722517 - MLT1A0 LTR MaLR -92 273 32 4 736 484 303 72 0 chr5 19815488 19815640 -132721619 - RSINE1 SINE B4 0 165 3 4 736 37 69 0 0 chr5 19816641 19816713 -132720546 + AT_rich Low_complexity Low_complexity 1 72 0 4 736 741 261 111 0 chr5 19817673 19817872 -132719387 + ID_B1 SINE B4 4 224 0 4 736 1294 193 37 66 chr5 19818055 19818405 -132718854 - RLTR31_Mur LTR ERVK -213 340 1 4 736 350 149 47 0 chr5 19818405 19818505 -132718754 - RMER3D-int LTR ERVK -37 2805 2742 4 736 4084 98 3 2 chr5 19818506 19819127 -132718132 - L1_Mm LINE L1 -1043 4840 4219 4 736 6943 96 14 1 chr5 19819124 19819563 -132717696 + L1_Mm LINE L1 4796 5234 -649 4 736 189 0 0 0 chr5 19819563 19819584 -132717675 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 736 6943 96 14 1 chr5 19819584 19820167 -132717092 + L1_Mm LINE L1 5235 5829 -54 4 736 235 331 168 26 chr5 19820178 19820333 -132716926 - MIRm SINE MIR -66 196 20 4 736 216 0 0 0 chr5 19820355 19820379 -132716880 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 736 489 111 11 11 chr5 19820449 19820540 -132716719 + L1_Mus2 LINE L1 6476 6566 0 4 736 3149 77 0 9 chr5 19820717 19821147 -132716112 - L1_Mus4 LINE L1 0 6636 6211 4 736 2585 56 12 0 chr5 19821370 19821707 -132715552 - L1_Mus1 LINE L1 0 6567 6227 4 736 889 272 39 1 chr5 19822020 19822299 -132714960 - Lx9 LINE L1 -1120 6524 6215 4 736 274 267 69 0 chr5 19822476 19822607 -132714652 + L1MA8 LINE L1 6135 6274 -17 4 736 252 0 0 0 chr5 19823306 19823334 -132713925 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 736 454 131 0 0 chr5 19823630 19823714 -132713545 - L1_Mus3 LINE L1 -5 6633 6550 4 736 470 297 112 54 chr5 19824353 19824613 -132712646 - LTR48B LTR ERV1 -246 398 124 4 736 201 74 0 0 chr5 19824864 19824891 -132712368 + (TATAA)n Simple_repeat Simple_repeat 2 28 0 4 736 214 182 45 0 chr5 19825110 19825154 -132712105 - MIRb SINE MIR -94 174 129 4 736 396 317 38 54 chr5 19825351 19825560 -132711699 + B3A SINE B2 3 214 -2 4 736 1925 201 52 108 chr5 19825881 19826439 -132710820 - RLTR11A2 LTR ERVK 0 527 1 4 736 297 0 0 0 chr5 19826737 19826770 -132710489 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 736 3095 192 29 90 chr5 19826812 19827670 -132709589 - RLTR19-int LTR ERVK -1758 4379 3574 4 736 1675 171 14 41 chr5 19827893 19828181 -132709078 - RLTR19-int LTR ERVK -2944 3193 2917 4 736 2847 132 128 11 chr5 19828181 19828704 -132708555 + RLTR31A_Mm LTR ERVK 1 584 0 4 736 1675 171 14 41 chr5 19828704 19828781 -132708478 - RLTR19-int LTR ERVK -3221 2916 2838 4 736 780 162 12 22 chr5 19828798 19828965 -132708294 + RLTR19-int LTR ERVK 3056 3193 -2944 4 736 261 0 0 0 chr5 19829302 19829331 -132707928 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 4 736 465 19 0 0 chr5 19829332 19829386 -132707873 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 4 736 1036 233 29 35 chr5 19829556 19829761 -132707498 + Lx9 LINE L1 7298 7504 -140 4 736 2536 43 64 15 chr5 19829761 19830091 -132707168 + ORR1A1 LTR MaLR 1 346 0 4 736 1036 233 29 35 chr5 19830091 19830177 -132707082 + Lx9 LINE L1 7505 7595 -49 4 736 2859 61 0 16 chr5 19830177 19830562 -132706697 + L1Md_F2 LINE L1 6202 6580 -2 4 736 1036 233 29 35 chr5 19830562 19830616 -132706643 + Lx9 LINE L1 7596 7641 -3 4 736 222 291 0 0 chr5 19830658 19830713 -132706546 + B4 SINE B4 86 140 -152 4 736 1693 200 24 24 chr5 19831768 19832142 -132705117 - ORR1D1 LTR MaLR 0 374 1 4 736 245 236 0 0 chr5 19833669 19833724 -132703535 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 736 795 21 0 0 chr5 19835348 19835441 -132701818 + (GGAA)n Simple_repeat Simple_repeat 1 93 0 4 736 24 0 0 0 chr5 19835635 19835659 -132701600 + AT_rich Low_complexity Low_complexity 1 24 0 4 736 183 42 0 0 chr5 19836283 19836307 -132700952 + (TAG)n Simple_repeat Simple_repeat 3 26 0 4 736 1102 104 18 0 chr5 19836685 19836849 -132700410 + URR1A DNA MER1_type 59 225 -1 4 736 441 54 0 0 chr5 19836979 19837035 -132700224 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 4 736 598 100 0 0 chr5 19837039 19837119 -132700140 - B1_Mus2 SINE Alu -6 141 62 4 736 189 313 11 88 chr5 19837225 19837316 -132699943 + MIRb SINE MIR 155 238 -30 4 736 22 0 0 0 chr5 19838103 19838125 -132699134 + AT_rich Low_complexity Low_complexity 1 22 0 4 736 309 321 52 26 chr5 19838957 19839072 -132698187 + PB1 SINE Alu 7 124 -3 4 736 25 0 0 0 chr5 19839563 19839588 -132697671 + AT_rich Low_complexity Low_complexity 1 25 0 4 736 7156 63 12 2 chr5 19842598 19843913 -132693346 - L1Md_F2 LINE L1 -1 6581 5267 4 736 3690 33 55 0 chr5 19843945 19844403 -132692856 - L1Md_F3 LINE L1 -3 6581 6099 4 736 1467 46 5 0 chr5 19844403 19844599 -132692660 + L1_Mm LINE L1 5198 5394 -489 4 736 34542 72 2 4 chr5 19844602 19850310 -132686949 - L1Md_F3 LINE L1 -474 6110 446 4 736 1007 101 0 0 chr5 19850302 19850451 -132686808 - L1Md_F2 LINE L1 -564 6018 5870 4 736 1094 78 0 0 chr5 19850451 19850605 -132686654 + L1Md_F2 LINE L1 5711 5864 -718 4 736 925 208 44 15 chr5 19850930 19851135 -132686124 - B3 SINE B2 -4 212 2 4 736 1443 239 90 6 chr5 19852426 19852783 -132684476 + MTD LTR MaLR 33 419 0 4 736 272 302 60 16 chr5 19853293 19853475 -132683784 - L1MC LINE L1 -2010 5872 5683 4 736 495 336 105 103 chr5 19854006 19854586 -132682673 + MER21B LTR ERV1 279 859 -4 4 736 24 0 0 0 chr5 19855313 19855337 -132681922 + AT_rich Low_complexity Low_complexity 1 24 0 4 736 531 92 0 0 chr5 19855363 19855450 -132681809 + (TGGA)n Simple_repeat Simple_repeat 4 90 0 4 736 754 268 58 5 chr5 19855456 19855647 -132681612 - B3 SINE B2 -15 201 1 4 736 1234 109 6 0 chr5 19855796 19855970 -132681289 + B2_Mm1a SINE B2 2 176 -17 4 736 1140 235 79 3 chr5 19856823 19857113 -132680146 - RMER1B Other Other -703 363 52 4 736 316 297 20 10 chr5 19857273 19857375 -132679884 - L1MC4 LINE L1 -4324 1891 1789 4 736 225 261 79 18 chr5 19857597 19857761 -132679498 - L1MC4 LINE L1 -4991 1224 1051 4 736 189 0 0 0 chr5 19859806 19859827 -132677432 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 736 281 319 29 14 chr5 19859859 19859999 -132677260 + Lx8 LINE L1 7248 7389 -84 4 736 294 293 28 28 chr5 19860169 19860313 -132676946 - L1MC4a LINE L1 -338 7544 7401 4 736 227 250 19 39 chr5 19860565 19860669 -132676590 + Lx7 LINE L1 7578 7679 -17 4 736 249 57 0 0 chr5 19860751 19860786 -132676473 + (T)n Simple_repeat Simple_repeat 1 35 0 4 736 238 239 169 26 chr5 19861464 19861653 -132675606 + L1MA6 LINE L1 6068 6283 -17 4 736 1164 268 6 32 chr5 19862939 19863279 -132673980 - Lx9 LINE L1 -230 7414 7084 4 736 36 0 0 0 chr5 19863372 19863408 -132673851 + AT_rich Low_complexity Low_complexity 1 36 0 4 736 31 44 0 0 chr5 19863447 19863492 -132673767 + AT_rich Low_complexity Low_complexity 1 45 0 4 736 250 265 24 0 chr5 19863720 19863803 -132673456 + L1ME4a LINE L1 5962 6046 -78 4 736 402 121 48 0 chr5 19866978 19867061 -132670198 + (TATG)n Simple_repeat Simple_repeat 3 89 0 4 736 290 306 0 0 chr5 19867410 19867472 -132669787 + ID4_ SINE ID 16 77 -6 4 736 683 168 182 0 chr5 19867609 19867818 -132669441 + Lx9 LINE L1 7397 7643 -1 4 736 191 234 43 0 chr5 19868548 19868595 -132668664 - MIR SINE MIR -207 55 7 4 736 198 0 0 0 chr5 19869865 19869887 -132667372 + (T)n Simple_repeat Simple_repeat 1 22 0 4 736 36263 30 0 0 chr5 19869893 19876318 -132660941 - L1Md_T LINE L1 0 6585 64 4 736 24 0 0 0 chr5 19876605 19876629 -132660630 + AT_rich Low_complexity Low_complexity 1 24 0 4 736 1827 152 64 149 chr5 19876729 19876996 -132660263 - MTC LTR MaLR 0 421 211 4 736 1077 113 0 0 chr5 19876996 19877164 -132660095 - L1_Mus2 LINE L1 -3 6563 6396 4 736 1827 152 64 149 chr5 19877164 19877352 -132659907 - MTC LTR MaLR -211 210 5 4 736 643 76 45 50 chr5 19877413 19877592 -132659667 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 736 535 308 59 52 chr5 19878618 19879174 -132658085 - Lx9 LINE L1 -32 7612 6909 5 736 188 326 0 0 chr5 19879431 19879477 -132657782 - L4 LINE RTE -1688 341 296 5 736 256 255 0 0 chr5 19879889 19879940 -132657319 + MamRep137 DNA TcMar? 33 83 -361 5 736 432 255 45 9 chr5 19880814 19880925 -132656334 - B3 SINE B2 -5 211 97 5 736 2195 40 0 21 chr5 19880952 19881233 -132656026 - IAPLTR3 LTR ERVK -51 275 1 5 736 365 157 89 11 chr5 19881233 19881321 -132655938 - B3A SINE B2 -103 95 1 5 736 453 263 26 26 chr5 19881698 19881815 -132655444 + B1F SINE Alu 22 138 -11 5 736 222 356 96 0 chr5 19881834 19881907 -132655352 + ID4 SINE ID 1 80 -3 5 736 399 157 0 0 chr5 19882222 19882292 -132654967 + (ATG)n Simple_repeat Simple_repeat 2 71 0 5 736 304 274 172 53 chr5 19882402 19882594 -132654665 - MIR SINE MIR -8 260 46 5 736 418 336 15 7 chr5 19882934 19883069 -132654190 + RSINE1 SINE B4 28 163 -2 5 736 1752 233 58 7 chr5 19885703 19886131 -132651128 - Lx6 LINE L1 -7 7453 7004 5 736 1021 124 7 0 chr5 19886189 19886334 -132650925 - B1_Mus1 SINE Alu -1 147 2 5 736 6351 166 23 7 chr5 19886337 19887583 -132649676 - L1_Mur3 LINE L1 -754 5126 3861 5 736 384 22 0 0 chr5 19887585 19887630 -132649629 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 736 474 143 36 0 chr5 19887637 19887721 -132649538 - L1_Mur3 LINE L1 -2088 3792 3706 5 736 1792 173 53 0 chr5 19887726 19888049 -132649210 - RMER6D LTR ERVK -13 707 368 5 736 339 65 0 0 chr5 19888053 19888099 -132649160 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 736 1172 55 7 0 chr5 19888351 19888497 -132648762 - B1_Mus1 SINE Alu 0 148 2 5 736 1379 58 0 25 chr5 19888762 19888958 -132648301 - L1_Mus4 LINE L1 -1 6635 6445 5 736 25 65 0 0 chr5 19888990 19889036 -132648223 + AT_rich Low_complexity Low_complexity 1 46 0 5 736 5229 86 7 28 chr5 19889124 19889867 -132647392 - L1_Mus2 LINE L1 0 6566 5840 5 736 9340 85 7 5 chr5 19889867 19892012 -132645247 + L1_Mus1 LINE L1 4416 6567 0 5 736 227 240 113 130 chr5 19892669 19892784 -132644475 - MIRb SINE MIR -25 243 131 5 736 327 325 92 7 chr5 19893810 19893962 -132643297 - MIRb SINE MIR -69 199 35 5 736 357 109 0 0 chr5 19894117 19894181 -132643078 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 736 243 0 0 0 chr5 19894223 19894250 -132643009 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 736 369 0 0 0 chr5 19894280 19894321 -132642938 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 736 350 309 0 50 chr5 19894335 19894434 -132642825 - RSINE1 SINE B4 -46 119 26 5 736 27 29 0 0 chr5 19895151 19895185 -132642074 + AT_rich Low_complexity Low_complexity 1 34 0 5 736 374 282 0 0 chr5 19895523 19895633 -132641626 + (CA)n Simple_repeat Simple_repeat 2 111 0 5 736 339 45 0 22 chr5 19895634 19895679 -132641580 + HAL1-3A_ME LINE L1 1974 2017 -841 5 736 418 267 19 0 chr5 19896053 19896158 -132641101 + PB1D10 SINE Alu 1 107 -10 5 736 233 184 0 0 chr5 19896180 19896218 -132641041 - tRNA-Lys-AAG tRNA tRNA -38 38 1 5 736 1146 68 0 20 chr5 19897910 19898059 -132639200 + B1_Mus2 SINE Alu 2 147 0 5 736 212 133 44 0 chr5 19899101 19899146 -132638113 + A-rich Low_complexity Low_complexity 2 48 0 5 736 29 28 0 0 chr5 19899608 19899644 -132637615 + AT_rich Low_complexity Low_complexity 1 36 0 5 736 199 393 42 67 chr5 19899890 19900010 -132637249 - L2b LINE L2 -2 3373 3257 5 736 1470 77 0 16 chr5 19900652 19900893 -132636366 + (TGGA)n Simple_repeat Simple_repeat 1 237 0 5 736 23 68 0 0 chr5 19901047 19901091 -132636168 + AT_rich Low_complexity Low_complexity 1 44 0 5 736 364 279 17 211 chr5 19901881 19902113 -132635146 - B4A SINE B4 0 292 106 5 736 568 252 22 22 chr5 19902432 19902570 -132634689 + RMER30 DNA MER1_type 2 139 -63 5 736 656 170 96 0 chr5 19902853 19902988 -132634271 + B1_Mur4 SINE Alu 3 150 0 5 736 835 343 11 21 chr5 19903062 19903348 -132633911 + B4A SINE B4 2 284 -8 5 736 234 306 159 25 chr5 19903385 19903587 -132633672 - MLT1H1 LTR MaLR -268 281 12 5 736 384 59 0 0 chr5 19903780 19903831 -132633428 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 736 2251 271 73 52 chr5 19903833 19903934 -132633325 - Lx9 LINE L1 -176 7468 7354 5 736 591 15 0 0 chr5 19903934 19904002 -132633257 + (TC)n Simple_repeat Simple_repeat 1 68 0 5 736 2251 271 73 52 chr5 19904002 19904947 -132632312 - Lx9 LINE L1 -291 7353 6400 5 736 372 94 0 0 chr5 19904967 19905020 -132632239 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 736 531 0 0 0 chr5 19905027 19905086 -132632173 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 5 736 270 0 0 0 chr5 19905107 19905137 -132632122 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 736 1088 101 18 0 chr5 19905578 19905808 -132631451 + (TCTA)n Simple_repeat Simple_repeat 1 234 0 5 736 279 298 0 9 chr5 19905817 19905922 -132631337 + CT-rich Low_complexity Low_complexity 2 105 0 5 736 522 275 43 48 chr5 19906096 19906283 -132630976 + B3A SINE B2 4 189 -9 5 736 4152 191 39 59 chr5 19906329 19907251 -132630008 - RMER13B LTR ERVK 0 908 5 5 736 6201 4 0 0 chr5 19907688 19908425 -132628834 + L1Md_A LINE L1 5899 6582 0 5 736 23 0 0 0 chr5 19909163 19909186 -132628073 + AT_rich Low_complexity Low_complexity 1 23 0 5 736 194 81 0 26 chr5 19910278 19910316 -132626943 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 5 736 192 182 0 0 chr5 19911121 19911165 -132626094 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 736 741 181 0 0 chr5 19911186 19911363 -132625896 + (TG)n Simple_repeat Simple_repeat 2 178 0 5 736 256 331 128 52 chr5 19914397 19914569 -132622690 - MIRb SINE MIR -1 267 83 5 736 305 162 15 0 chr5 19914762 19914830 -132622429 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 736 348 83 0 0 chr5 19914866 19914914 -132622345 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 736 258 297 15 15 chr5 19915196 19915261 -132621998 - tRNA-Gly-GGY tRNA tRNA -3 71 7 5 736 429 319 50 0 chr5 19916559 19916700 -132620559 + B1F SINE Alu 1 148 -1 5 736 778 278 45 10 chr5 19917147 19917347 -132619912 + B3 SINE B2 10 216 0 5 736 601 226 61 61 chr5 19917385 19917583 -132619676 + B3A SINE B2 1 198 0 5 736 1198 33 7 0 chr5 19918914 19919067 -132618192 - L1Md_F2 LINE L1 -1 6581 6428 5 736 802 281 72 84 chr5 19919479 19919728 -132617531 - 7SK RNA RNA -85 246 1 5 736 208 186 23 0 chr5 19920233 19920276 -132616983 + CT-rich Low_complexity Low_complexity 1 44 0 5 736 409 269 83 15 chr5 19920276 19920408 -132616851 - B1F2 SINE Alu -7 142 2 5 736 22 0 0 0 chr5 19920650 19920672 -132616587 + AT_rich Low_complexity Low_complexity 1 22 0 5 736 252 59 0 0 chr5 19920789 19920823 -132616436 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 736 249 274 9 113 chr5 19920823 19920938 -132616321 - Lx9 LINE L1 -184 7460 7358 5 736 701 253 96 25 chr5 19921000 19921239 -132616020 - Lx9 LINE L1 -400 7244 6989 5 736 891 272 117 0 chr5 19921239 19921522 -132615737 - Lx9 LINE L1 -849 6795 6480 5 736 26 30 0 0 chr5 19922167 19922200 -132615059 + AT_rich Low_complexity Low_complexity 1 33 0 5 736 1832 216 51 5 chr5 19922200 19922633 -132614626 - Lx9 LINE L1 -310 7334 6882 5 11 2535 91 6 6 chr5 19922653 19923019 -132614240 - L1_Mus3 LINE L1 -2 6636 6271 5 737 21 0 0 0 chr5 19923064 19923085 -132614174 + AT_rich Low_complexity Low_complexity 1 21 0 5 737 1271 234 63 75 chr5 19923092 19923518 -132613741 - RMER16 LTR ERVK 0 533 113 5 737 492 18 0 0 chr5 19923575 19923632 -132613627 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 737 4469 127 17 24 chr5 19923661 19924422 -132612837 - RMER6A LTR ERVK 0 756 1 5 737 5013 92 7 18 chr5 19924463 19925378 -132611881 - Lx3A LINE L1 -611 6370 5467 5 737 4204 97 48 16 chr5 19925378 19925989 -132611270 + Lx3A LINE L1 6350 6979 -2 5 737 260 353 145 19 chr5 19926597 19926756 -132610503 + MIR SINE MIR 58 236 -26 5 737 22 56 0 0 chr5 19927324 19927360 -132609899 + AT_rich Low_complexity Low_complexity 1 36 0 5 737 424 329 91 10 chr5 19927493 19927702 -132609557 - MIRc SINE MIR -17 251 26 5 737 2789 278 76 112 chr5 19928513 19929344 -132607915 - Lx5 LINE L1 -8 7042 6310 5 737 225 0 0 0 chr5 19929344 19929369 -132607890 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 5 737 2789 205 38 223 chr5 19929369 19931083 -132606176 - Lx5 LINE L1 -741 6309 4840 5 737 1814 144 46 27 chr5 19931072 19931442 -132605817 - Lx5 LINE L1 -3045 2835 2459 5 737 8101 22 0 1 chr5 19931443 19932823 -132604436 - L1Md_T LINE L1 0 6582 5204 5 737 4873 189 59 29 chr5 19932814 19934347 -132602912 - Lx5 LINE L1 -3411 2466 892 5 737 485 323 14 43 chr5 19935392 19935531 -132601728 + ID_B1 SINE B4 83 217 -7 5 737 23 68 0 0 chr5 19935657 19935701 -132601558 + AT_rich Low_complexity Low_complexity 1 44 0 5 737 271 366 0 31 chr5 19937132 19937224 -132600035 - RSINE1 SINE B4 -28 137 49 5 737 453 210 99 53 chr5 19937224 19937355 -132599904 - RLTR14 LTR ERV1 0 382 246 5 737 240 59 0 0 chr5 19937385 19937419 -132599840 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 5 737 507 33 0 0 chr5 19938591 19938652 -132598607 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 737 248 0 31 0 chr5 19938780 19938812 -132598447 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 737 367 292 108 78 chr5 19938835 19939103 -132598156 - B4 SINE B4 -16 276 1 5 737 442 329 93 34 chr5 19939235 19939613 -132597646 + L2a LINE L2 2987 3386 -40 5 737 259 421 23 17 chr5 19939629 19939803 -132597456 - L2a LINE L2 -187 3239 3065 5 737 879 161 93 0 chr5 19939829 19939991 -132597268 + ORR1B1 LTR MaLR 215 391 -3 5 737 260 154 0 88 chr5 19940190 19940247 -132597012 - MTD LTR MaLR 0 419 368 5 737 348 250 40 0 chr5 19940247 19940347 -132596912 + L1MA4A LINE L1 5820 5923 -380 5 737 1380 181 172 6 chr5 19940563 19940707 -132596552 - MTD LTR MaLR -35 384 215 5 737 1006 37 22 0 chr5 19940707 19940841 -132596418 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 5 737 5022 71 5 0 chr5 19940843 19941493 -132595766 - L1_Mus1 LINE L1 -9 6558 5906 5 737 1380 178 178 0 chr5 19941493 19941683 -132595576 - MTD LTR MaLR -205 214 5 5 737 770 292 90 37 chr5 19941741 19942197 -132595062 + Charlie4a DNA MER1_type 28 507 -1 5 737 1515 172 35 12 chr5 19942885 19943177 -132594082 - ORR1B1 LTR MaLR -114 280 1 6 737 229 204 0 0 chr5 19943678 19943732 -132593527 + T-rich Low_complexity Low_complexity 2 55 0 6 737 720 294 90 49 chr5 19943736 19944223 -132593036 - L1MC3 LINE L1 -206 7579 7073 6 737 1163 232 60 89 chr5 19944460 19944843 -132592416 - ORR1D1 LTR MaLR -2 372 1 6 737 2073 218 129 17 chr5 19945647 19946188 -132591071 - RMER20B LTR ERVK -25 602 1 6 737 318 167 16 16 chr5 19947079 19947140 -132590119 + tRNA-Ala-GCY_ tRNA tRNA 2 62 -13 6 737 5355 47 8 1 chr5 19949254 19949920 -132587339 - L1Md_F2 LINE L1 -2 6580 5911 6 737 431 87 14 0 chr5 19949927 19949996 -132587263 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 6 737 508 77 0 0 chr5 19950193 19950271 -132586988 + L1_Mus2 LINE L1 6489 6566 0 6 737 768 171 6 12 chr5 19950277 19950443 -132586816 + GA-rich Low_complexity Low_complexity 4 168 0 6 737 1678 206 129 27 chr5 19950926 19951027 -132586232 + Lx9 LINE L1 7088 7184 -460 6 737 1638 156 10 32 chr5 19951027 19951339 -132585920 - Lx2B LINE L1 -4 6996 6692 6 737 1678 202 133 28 chr5 19951339 19951634 -132585625 + Lx9 LINE L1 7185 7480 -164 6 737 249 33 0 0 chr5 19951634 19951664 -132585595 + (CATA)n Simple_repeat Simple_repeat 2 31 0 6 737 1678 202 133 28 chr5 19951664 19951777 -132585482 + Lx9 LINE L1 7481 7642 -2 6 737 287 327 99 9 chr5 19951803 19951914 -132585345 - MER5B DNA MER1_type -48 130 10 6 737 324 338 30 15 chr5 19951921 19952056 -132585203 + MER5A1 DNA MER1_type 9 145 -21 6 737 255 365 10 0 chr5 19952213 19952317 -132584942 + MIRb SINE MIR 146 250 -18 6 737 945 159 0 0 chr5 19953681 19953996 -132583263 + (TG)n Simple_repeat Simple_repeat 1 315 0 6 737 688 317 50 0 chr5 19954566 19954765 -132582494 + MER58A DNA MER1_type 5 213 -11 6 737 456 19 0 0 chr5 19954988 19955041 -132582218 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 737 351 247 0 0 chr5 19955090 19955179 -132582080 + RMER1B Other Other 59 147 -919 6 737 1417 223 184 3 chr5 19955602 19955993 -132581266 + RMER1B Other Other 43 504 -562 6 737 336 83 0 0 chr5 19956067 19956115 -132581144 + (GGGA)n Simple_repeat Simple_repeat 4 51 0 6 737 485 30 0 29 chr5 19956115 19956183 -132581076 + (CAGAGA)n Simple_repeat Simple_repeat 2 67 0 6 737 473 115 0 10 chr5 19956183 19956280 -132580979 + (CTTG)n Simple_repeat Simple_repeat 3 98 0 6 737 489 193 59 11 chr5 19956290 19956431 -132580828 + RMER1B Other Other 875 1062 -4 6 737 564 237 23 88 chr5 19956747 19956918 -132580341 + ID_B1 SINE B4 56 215 -9 6 737 765 125 0 0 chr5 19956918 19957038 -132580221 + (ATG)n Simple_repeat Simple_repeat 2 121 0 6 737 339 256 112 42 chr5 19958724 19958867 -132578392 + Charlie19a DNA Charlie 138 290 -96 6 737 1029 133 0 0 chr5 19961669 19961904 -132575355 + (TG)n Simple_repeat Simple_repeat 1 235 0 6 737 529 248 41 0 chr5 19962792 19962913 -132574346 + RSINE1 SINE B4 2 127 -38 6 737 264 221 0 0 chr5 19962928 19963005 -132574254 + GA-rich Low_complexity Low_complexity 2 78 0 6 737 247 306 81 9 chr5 19964353 19964475 -132572784 + MIRc SINE MIR 34 162 -46 6 737 206 317 32 24 chr5 19965202 19965285 -132571974 + GA-rich Low_complexity Low_complexity 3 87 0 6 737 214 218 36 18 chr5 19965220 19965276 -132571983 + G-rich Low_complexity Low_complexity 4 60 0 6 737 2330 64 3 0 chr5 19965285 19965580 -132571679 + L1_Mus1 LINE L1 6272 6567 0 6 737 206 317 32 24 chr5 19965580 19965622 -132571637 + polypurine Low_complexity Low_complexity 88 128 0 6 737 288 0 0 0 chr5 19965680 19965712 -132571547 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 737 21 0 0 0 chr5 19965749 19965770 -132571489 + AT_rich Low_complexity Low_complexity 1 21 0 6 737 849 223 7 117 chr5 19965870 19966179 -132571080 + Lx6 LINE L1 7184 7458 -2 6 737 271 283 107 52 chr5 19968160 19968379 -132568880 - MIRc SINE MIR -13 255 27 6 737 677 173 26 0 chr5 19969357 19969513 -132567746 + (TAGA)n Simple_repeat Simple_repeat 2 161 0 6 737 808 89 38 12 chr5 19969529 19969689 -132567570 + (TGGA)n Simple_repeat Simple_repeat 1 164 0 6 737 238 323 0 15 chr5 19969772 19969838 -132567421 + ID4 SINE ID 10 74 -9 6 737 576 77 0 0 chr5 19972136 19972214 -132565045 + (TAA)n Simple_repeat Simple_repeat 3 80 0 6 737 198 103 68 17 chr5 19973928 19973987 -132563272 + (CACCC)n Simple_repeat Simple_repeat 5 66 0 6 737 31 0 0 0 chr5 19974134 19974165 -132563094 + AT_rich Low_complexity Low_complexity 1 31 0 6 737 373 330 154 11 chr5 19974387 19974660 -132562599 - L1ME1 LINE L1 -20 6159 5848 6 737 247 289 115 33 chr5 19974719 19974962 -132562297 - L1ME1 LINE L1 -408 5776 5514 6 737 257 265 121 57 chr5 19975110 19975234 -132562025 - BC1_Mm scRNA scRNA -8 144 13 6 737 674 294 103 50 chr5 19975451 19975867 -132561392 - L1ME1 LINE L1 -1062 5084 4647 6 737 1509 262 57 11 chr5 19975870 19976330 -132560929 - Lx8 LINE L1 -71 7402 6922 6 737 233 208 73 36 chr5 19976330 19976365 -132560894 - RLTR24 LTR ERV1 0 529 496 6 737 2783 156 339 6 chr5 19976365 19977009 -132560250 - RMER13A LTR ERVK -2 858 1 6 737 233 208 73 36 chr5 19977009 19977028 -132560231 - RLTR24 LTR ERV1 -34 495 473 6 737 312 48 0 0 chr5 19977052 19977094 -132560165 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 6 737 1208 191 66 15 chr5 19977096 19977367 -132559892 - RLTR24 LTR ERV1 -244 285 1 6 737 919 245 10 15 chr5 19977594 19977793 -132559466 - B3 SINE B2 0 216 19 6 737 629 267 49 81 chr5 19977957 19978362 -132558897 - MTD LTR MaLR -21 398 6 6 737 439 261 148 41 chr5 19978370 19978566 -132558693 - L1ME1 LINE L1 -2018 4128 3917 6 737 4495 42 20 5 chr5 19978566 19979118 -132558141 - LTRIS2 LTR ERV1 0 564 5 6 737 439 254 185 42 chr5 19979118 19979406 -132557853 - L1ME1 LINE L1 -2230 3916 3587 6 737 293 271 28 10 chr5 19979734 19979871 -132557388 - L1ME1 LINE L1 -3107 3039 2901 6 737 438 20 0 0 chr5 19980067 19980118 -132557141 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 737 325 333 0 0 chr5 19980129 19980210 -132557049 - PB1D10 SINE Alu -29 88 8 6 737 805 168 268 6 chr5 19980447 19980615 -132556644 + B3 SINE B2 1 212 -4 6 737 232 295 0 0 chr5 19980646 19980707 -132556552 + RSINE1 SINE B4 3 63 -102 6 737 2142 235 81 25 chr5 19981948 19982871 -132554388 - Lx7 LINE L1 -1484 5989 5010 6 737 1617 160 26 90 chr5 19982877 19983097 -132554162 - ORR1A4 LTR MaLR -8 321 97 6 737 267 79 0 0 chr5 19983097 19983135 -132554124 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 737 1617 160 26 90 chr5 19983135 19983257 -132554002 - ORR1A4 LTR MaLR -233 96 1 6 737 1572 245 45 85 chr5 19983257 19983918 -132553341 - Lx7 LINE L1 -868 5012 4378 6 737 1126 194 3 20 chr5 19983946 19984184 -132553075 - MT2B LTR ERVL 0 601 243 6 737 516 234 108 0 chr5 19984208 19984366 -132552893 - Lx7 LINE L1 -1863 4017 3843 6 737 3114 68 15 0 chr5 19984599 19985011 -132552248 - Lx3_Mus LINE L1 -8 7001 6584 6 737 233 244 15 75 chr5 19986927 19987060 -132550199 + L1_Rod LINE L1 3045 3169 -2678 6 737 612 231 0 0 chr5 19987399 19987507 -132549752 - PB1D9 SINE Alu -6 114 7 6 737 338 333 0 51 chr5 19987416 19987533 -132549726 - ID_B1 SINE B4 -49 175 65 6 737 21 36 0 0 chr5 19987594 19987622 -132549637 + AT_rich Low_complexity Low_complexity 1 28 0 6 737 5548 52 32 0 chr5 19987660 19988354 -132548905 + L1_Mus1 LINE L1 5852 6567 0 6 737 22 0 0 0 chr5 19988948 19988970 -132548289 + AT_rich Low_complexity Low_complexity 1 22 0 6 737 256 345 17 26 chr5 19990226 19990342 -132546917 - L2a LINE L2 -7 3419 3305 6 737 960 87 135 33 chr5 19991872 19992087 -132545172 - Lx9 LINE L1 0 7644 7408 6 737 24 0 0 0 chr5 19992525 19992549 -132544710 + AT_rich Low_complexity Low_complexity 1 24 0 6 737 215 31 31 0 chr5 19993072 19993104 -132544155 + (CAA)n Simple_repeat Simple_repeat 2 34 0 6 737 211 260 217 51 chr5 19993159 19993297 -132543962 + MIRb SINE MIR 37 197 -71 6 737 320 314 23 33 chr5 19993970 19994182 -132543077 - B4 SINE B4 -28 264 2 6 737 507 242 169 43 chr5 19994234 19994357 -132542902 + MER58B DNA MER1_type 1 133 -208 6 737 480 50 12 24 chr5 19994357 19994439 -132542820 + (TA)n Simple_repeat Simple_repeat 1 81 0 6 737 507 242 169 43 chr5 19994439 19994617 -132542642 + MER58B DNA MER1_type 134 339 -2 6 737 788 275 129 19 chr5 19994701 19994964 -132542295 + B4A SINE B4 1 292 0 6 737 270 324 0 0 chr5 19994969 19995040 -132542219 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 737 636 277 58 15 chr5 19996155 19996360 -132540899 + ID_B1 SINE B4 1 214 -10 6 737 301 322 181 4 chr5 19997387 19997652 -132539607 + MER5C DNA MER1_type 2 313 0 6 737 799 253 63 0 chr5 19997732 19997922 -132539337 + B4 SINE B4 5 206 -86 6 737 384 22 0 0 chr5 19997977 19998022 -132539237 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 737 430 254 42 0 chr5 19999661 19999779 -132537480 - RSINE1 SINE B4 -41 124 2 6 737 912 218 6 0 chr5 20000790 20000969 -132536290 + B3 SINE B2 1 180 -36 1 737 561 228 53 189 chr5 20000979 20001175 -132536084 + MTE2b LTR MaLR 1 170 -209 2 737 3938 82 0 0 chr5 20001175 20001664 -132535595 + L1Md_T LINE L1 6094 6582 0 3 737 605 295 90 35 chr5 20001704 20001904 -132535355 + MTE2b LTR MaLR 167 377 -2 2 737 225 316 162 61 chr5 20002064 20002212 -132535047 + MIRb SINE MIR 22 184 -84 4 737 24 0 0 0 chr5 20002583 20002607 -132534652 + AT_rich Low_complexity Low_complexity 1 24 0 5 737 188 214 0 0 chr5 20003314 20003356 -132533903 + MIR SINE MIR 215 256 -6 6 737 215 352 143 60 chr5 20003772 20004038 -132533221 - L2c LINE L2 -28 3359 3072 7 737 21 36 0 0 chr5 20005512 20005540 -132531719 + AT_rich Low_complexity Low_complexity 1 28 0 8 737 297 0 0 0 chr5 20005672 20005705 -132531554 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 737 194 264 26 53 chr5 20006663 20006739 -132530520 - L3 LINE CR1 -919 3570 3497 1 737 1942 214 49 23 chr5 20006909 20007404 -132529855 - Lx6 LINE L1 -26 7434 6556 1 737 22 0 0 0 chr5 20008355 20008377 -132528882 + AT_rich Low_complexity Low_complexity 1 22 0 1 737 14358 83 17 6 chr5 20008444 20010457 -132526802 - L1VL4 LINE L1 -627 2932 896 1 737 345 34 51 0 chr5 20010457 20010516 -132526743 + (TTG)n Simple_repeat Simple_repeat 2 63 0 1 737 14358 103 22 16 chr5 20010516 20011232 -132526027 - L1VL4 LINE L1 -5407 895 185 1 737 3037 73 137 5 chr5 20011235 20011672 -132525587 - L1VL2 LINE L1 -5645 690 196 1 737 202 73 24 24 chr5 20012966 20013008 -132524251 + (CCCCCA)n Simple_repeat Simple_repeat 1 42 0 1 737 1984 207 66 37 chr5 20013009 20013626 -132523633 - BGLII_B LTR ERVK -39 514 1 1 737 262 313 162 15 chr5 20013656 20013792 -132523467 - RSINE1 SINE B4 -8 157 2 1 737 188 179 50 25 chr5 20014795 20014835 -132522424 - MER5A DNA MER1_type -22 167 127 1 737 824 291 162 24 chr5 20015026 20015490 -132521769 - L1MA5 LINE L1 -305 5995 5468 2 737 432 251 62 28 chr5 20015597 20015773 -132521486 + L1M2 LINE L1 5183 5364 -779 2 737 474 280 158 32 chr5 20015816 20016196 -132521063 - L1MA5 LINE L1 -2818 3325 2898 2 737 241 250 0 0 chr5 20016311 20016363 -132520896 - MER5A1 DNA MER1_type -113 53 2 2 737 286 267 45 45 chr5 20016674 20016780 -132520479 - MLT1E2 LTR MaLR 0 505 400 2 737 715 201 217 56 chr5 20016780 20017102 -132520157 - MTE2b LTR MaLR -1 378 5 2 737 636 330 63 38 chr5 20017173 20017460 -132519799 - MLT1E2 LTR MaLR -332 295 2 2 737 580 139 112 24 chr5 20017608 20017733 -132519526 + B1_Mur4 SINE Alu 15 150 0 2 737 22 70 0 0 chr5 20018040 20018083 -132519176 + AT_rich Low_complexity Low_complexity 1 43 0 2 737 219 139 0 0 chr5 20018091 20018127 -132519132 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2 737 2510 164 15 37 chr5 20020168 20020631 -132516628 - RLTR11B LTR ERVK 0 453 1 2 737 1566 17 0 16 chr5 20020730 20020913 -132516346 - L1Md_F3 LINE L1 -14 6570 6391 2 737 21 0 0 0 chr5 20022078 20022099 -132515160 + AT_rich Low_complexity Low_complexity 1 21 0 3 737 3604 182 67 20 chr5 20022237 20022410 -132514849 - Lx7 LINE L1 -1337 6359 6196 3 737 456 19 0 0 chr5 20022410 20022463 -132514796 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 737 5455 219 175 23 chr5 20022463 20024750 -132512509 - Lx7 LINE L1 -1501 6195 3505 3 737 362 200 0 14 chr5 20025034 20025105 -132512154 + B3A SINE B2 1 70 -128 3 737 24 67 0 0 chr5 20025361 20025406 -132511853 + AT_rich Low_complexity Low_complexity 1 45 0 3 737 256 306 121 54 chr5 20026117 20026196 -132511063 + ID_B1 SINE B4 2 91 -133 3 737 258 340 82 0 chr5 20026196 20026293 -132510966 + PB1D10 SINE Alu 3 107 -10 3 737 489 131 0 0 chr5 20026397 20026481 -132510778 + (TC)n Simple_repeat Simple_repeat 1 84 0 3 737 820 114 51 107 chr5 20026553 20026730 -132510529 + B2_Mm2 SINE B2 23 189 -6 3 737 339 354 63 45 chr5 20026887 20027109 -132510150 - Tigger5 DNA MER2_type -2179 227 2 3 737 1014 299 118 101 chr5 20027653 20028070 -132509189 - Lx8 LINE L1 -927 6717 6180 4 737 1044 124 0 0 chr5 20028070 20028248 -132509011 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 737 3617 258 141 34 chr5 20028248 20029398 -132507861 - Lx8 LINE L1 -1294 6179 4860 4 737 402 21 0 0 chr5 20029398 20029445 -132507814 + (TTG)n Simple_repeat Simple_repeat 2 48 0 4 737 3617 238 130 21 chr5 20029445 20029937 -132507322 - Lx8 LINE L1 -1019 4867 4321 4 737 446 262 85 28 chr5 20030307 20030484 -132506775 + MER53 DNA hAT 3 189 -4 4 737 243 0 0 0 chr5 20030716 20030743 -132506516 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 737 1172 109 57 0 chr5 20033171 20033346 -132503913 - B2_Mm2 SINE B2 -9 186 2 4 737 247 280 20 0 chr5 20034887 20034987 -132502272 + (TA)n Simple_repeat Simple_repeat 2 103 0 4 737 465 314 46 20 chr5 20036219 20036414 -132500845 + MIR SINE MIR 26 225 -37 4 737 263 71 24 0 chr5 20037033 20037075 -132500184 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 4 737 1681 56 0 0 chr5 20038156 20038352 -132498907 + L1_Mus1 LINE L1 6372 6567 0 4 737 252 0 0 0 chr5 20038604 20038632 -132498627 + (A)n Simple_repeat Simple_repeat 1 28 0 5 737 418 250 144 14 chr5 20040546 20040761 -132496498 - L1MA6 LINE L1 -32 6268 6026 5 737 1195 30 0 0 chr5 20041184 20041317 -132495942 + B1_Mm SINE Alu 3 135 -12 5 737 250 262 75 0 chr5 20047978 20048058 -132489201 + PB1D7 SINE Alu 4 89 -31 5 737 1378 98 27 0 chr5 20048224 20048408 -132488851 + B2_Mm2 SINE B2 1 189 -6 5 737 21 71 0 0 chr5 20049859 20049901 -132487358 + AT_rich Low_complexity Low_complexity 1 42 0 5 737 727 196 0 50 chr5 20051253 20051393 -132485866 + B1_Mur3 SINE Alu 1 133 -16 5 737 725 158 17 34 chr5 20051436 20051613 -132485646 + G-rich Low_complexity Low_complexity 5 178 0 5 737 291 143 20 0 chr5 20051615 20051664 -132485595 + GA-rich Low_complexity Low_complexity 1 50 0 5 737 870 124 5 38 chr5 20051664 20051849 -132485410 + G-rich Low_complexity Low_complexity 1 179 0 5 737 305 267 84 19 chr5 20052424 20052531 -132484728 - PB1D9 SINE Alu -6 114 1 6 737 246 32 0 0 chr5 20053290 20053321 -132483938 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 738 1323 125 5 5 chr5 20054670 20054863 -132482396 - B2_Mm2 SINE B2 -2 193 1 6 738 215 319 0 0 chr5 20056822 20056891 -132480368 + MIR SINE MIR 120 188 -74 6 738 198 327 18 55 chr5 20057045 20057155 -132480104 + L3 LINE CR1 4270 4375 -114 6 738 1092 83 0 20 chr5 20057762 20057909 -132479350 - B1_Mus2 SINE Alu -3 144 1 6 738 1202 285 87 10 chr5 20058187 20058591 -132478668 - MER70B LTR ERVL -141 437 3 6 738 316 310 73 45 chr5 20058593 20058772 -132478487 - MER77 LTR ERVL -11 596 413 6 738 551 236 27 41 chr5 20059379 20059525 -132477734 - U4 snRNA snRNA -1 144 1 6 738 806 171 71 0 chr5 20060273 20060443 -132476816 + URR1A DNA MER1_type 1 182 -44 6 738 993 106 75 43 chr5 20060630 20060817 -132476442 + B2_Mm2 SINE B2 2 194 -1 7 738 225 0 0 0 chr5 20061805 20061830 -132475429 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 7 738 439 257 200 32 chr5 20061887 20062072 -132475187 - Lx9 LINE L1 -41 7603 7388 7 738 503 318 0 7 chr5 20062562 20062711 -132474548 + B1_Mur2 SINE Alu 2 149 0 7 738 22 0 0 0 chr5 20063026 20063048 -132474211 + AT_rich Low_complexity Low_complexity 1 22 0 7 738 476 59 15 0 chr5 20063462 20063530 -132473729 + (TA)n Simple_repeat Simple_repeat 1 69 0 7 738 2050 303 88 25 chr5 20063603 20064581 -132472678 + Lx8 LINE L1 6432 7471 -2 7 738 22 0 0 0 chr5 20066481 20066503 -132470756 + AT_rich Low_complexity Low_complexity 1 22 0 7 738 311 281 31 20 chr5 20066624 20066722 -132470537 - MIRc SINE MIR -111 157 59 7 738 296 197 56 14 chr5 20068042 20068114 -132469145 - MIR SINE MIR -69 139 65 7 738 286 291 23 13 chr5 20072191 20072307 -132464952 - MTEa LTR MaLR -13 366 238 8 738 1115 136 6 0 chr5 20072477 20072653 -132464606 + B2_Mm2 SINE B2 1 177 -18 8 738 183 42 0 0 chr5 20072834 20072858 -132464401 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 8 738 1030 201 5 0 chr5 20073404 20073593 -132463666 + B3 SINE B2 2 191 -25 8 738 288 0 0 0 chr5 20074183 20074215 -132463044 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 738 404 291 110 61 chr5 20074265 20074528 -132462731 - B4 SINE B4 -16 276 1 8 738 414 0 0 0 chr5 20075208 20075254 -132462005 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 738 268 372 9 0 chr5 20077660 20077773 -132459486 + MIR SINE MIR 7 120 -142 8 738 4353 108 75 6 chr5 20078151 20078830 -132458429 - RMER19A LTR ERVK 0 737 12 8 738 719 218 21 14 chr5 20078814 20078958 -132458301 - B3 SINE B2 -71 145 1 8 738 454 235 105 31 chr5 20079163 20079309 -132457950 - B3 SINE B2 -23 172 28 9 738 933 161 166 0 chr5 20080131 20080324 -132456935 - URR1A DNA MER1_type 0 226 2 9 738 1210 61 0 0 chr5 20080433 20080580 -132456679 + B1_Mus1 SINE Alu 1 147 -1 9 738 630 0 0 0 chr5 20080583 20080653 -132456606 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 9 738 479 246 25 42 chr5 20081452 20081571 -132455688 + B1F SINE Alu 32 148 -1 9 738 865 207 189 20 chr5 20082099 20082407 -132454852 - MTD LTR MaLR -13 406 47 9 738 361 265 201 0 chr5 20082433 20082622 -132454637 - MTD-int LTR MaLR -22 1236 1010 9 738 1744 255 146 55 chr5 20082622 20083390 -132453869 - MTD-int LTR MaLR -412 846 9 9 738 1150 239 137 47 chr5 20083390 20083734 -132453525 - MTD LTR MaLR -12 407 32 9 738 202 274 67 27 chr5 20087162 20087237 -132450022 + L2 LINE L2 2851 2928 -491 9 738 328 305 93 26 chr5 20087675 20087991 -132449268 - L1MD2 LINE L1 -181 5998 5662 9 738 333 0 0 0 chr5 20089883 20089920 -132447339 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 738 214 195 0 0 chr5 20089977 20090018 -132447241 + ID4 SINE ID 43 83 0 1 738 363 118 0 14 chr5 20090023 20090092 -132447167 + L1_Mus2 LINE L1 6499 6566 0 1 738 440 312 78 52 chr5 20090281 20090551 -132446708 + HAL1 LINE L1 1014 1290 -1217 1 738 489 311 135 50 chr5 20090745 20091063 -132446196 - MER2 DNA MER2_type 0 345 1 1 738 768 103 0 0 chr5 20091403 20091519 -132445740 + B1_Mus2 SINE Alu 24 139 -8 1 738 362 21 0 21 chr5 20091519 20091567 -132445692 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 738 2858 62 8 0 chr5 20092151 20092520 -132444739 - L1Md_F2 LINE L1 -2 6580 6209 1 738 2413 92 3 6 chr5 20092978 20093308 -132443951 - ORR1A4 LTR MaLR 0 329 1 1 738 536 299 36 6 chr5 20093424 20093589 -132443670 - MER45A DNA Tip100 -1 177 8 1 738 24 32 0 0 chr5 20094144 20094175 -132443084 + AT_rich Low_complexity Low_complexity 1 31 0 1 738 22 0 0 0 chr5 20095626 20095648 -132441611 + AT_rich Low_complexity Low_complexity 1 22 0 1 738 471 192 76 8 chr5 20096037 20096168 -132441091 + B1F SINE Alu 1 140 -9 1 738 270 282 152 28 chr5 20098041 20098229 -132439030 + MIR SINE MIR 2 206 -56 1 738 43 76 0 0 chr5 20098251 20098343 -132438916 + AT_rich Low_complexity Low_complexity 1 92 0 1 738 22266 128 82 16 chr5 20098567 20104313 -132432946 - L1_Mus3 LINE L1 -7 6631 471 1 738 201 256 0 0 chr5 20104431 20104474 -132432785 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 738 241 89 44 0 chr5 20104479 20104524 -132432735 + (AGGGGG)n Simple_repeat Simple_repeat 4 50 0 1 738 232 333 115 0 chr5 20104933 20105020 -132432239 - RSINE1 SINE B4 -65 100 4 1 738 244 78 19 38 chr5 20105771 20105824 -132431435 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 1 738 334 0 43 0 chr5 20106547 20106593 -132430666 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 738 351 296 23 23 chr5 20107038 20107166 -132430093 + MER20 DNA MER1_type 42 169 -50 1 738 231 36 0 0 chr5 20107245 20107273 -132429986 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 1 738 458 136 12 0 chr5 20108493 20108574 -132428685 + (GGGA)n Simple_repeat Simple_repeat 3 84 0 1 738 1461 165 88 60 chr5 20108993 20109392 -132427867 - RMER17C LTR ERVK 0 410 1 1 738 261 238 0 48 chr5 20111049 20111072 -132426187 + A-rich Low_complexity Low_complexity 1 21 0 1 738 1181 55 0 7 chr5 20111072 20111218 -132426041 + B1_Mus2 SINE Alu 2 146 -1 1 738 261 238 0 48 chr5 20111218 20111278 -132425981 + A-rich Low_complexity Low_complexity 22 80 0 1 738 634 275 151 23 chr5 20111441 20111752 -132425507 - Lx9 LINE L1 -3 7641 7153 1 738 297 0 0 0 chr5 20111979 20112012 -132425247 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 738 511 302 120 20 chr5 20112048 20112298 -132424961 - B4A SINE B4 -16 276 2 1 738 420 300 9 0 chr5 20113215 20113325 -132423934 + PB1D10 SINE Alu 6 116 -1 1 738 409 292 54 0 chr5 20113861 20113991 -132423268 + B3 SINE B2 1 137 -79 1 738 481 15 30 0 chr5 20114000 20114066 -132423193 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 738 309 98 0 19 chr5 20114094 20114146 -132423113 + PB1D10 SINE Alu 2 52 -65 1 738 917 73 0 14 chr5 20114134 20114273 -132422986 + B1_Mus1 SINE Alu 12 148 0 1 738 342 0 0 0 chr5 20114393 20114431 -132422828 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 738 392 135 14 0 chr5 20114431 20114505 -132422754 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 738 525 263 114 51 chr5 20114589 20114782 -132422477 - B3A SINE B2 -3 213 2 1 738 1294 107 11 16 chr5 20116025 20116215 -132421044 + B2_Mm1t SINE B2 1 189 -4 1 738 391 220 97 15 chr5 20117146 20117280 -132419979 + B1F SINE Alu 1 145 -4 1 738 24 53 0 0 chr5 20118229 20118267 -132418992 + AT_rich Low_complexity Low_complexity 1 38 0 1 738 566 278 8 0 chr5 20118278 20118411 -132418848 - RSINE1 SINE B4 -17 148 15 1 738 275 284 169 56 chr5 20120881 20121165 -132416094 - L1ME3B LINE L1 -302 5938 5623 1 738 465 285 0 107 chr5 20121471 20121648 -132415611 - RSINE1 SINE B4 -5 160 3 1 738 475 16 31 0 chr5 20121655 20121719 -132415540 + (TTA)n Simple_repeat Simple_repeat 2 67 0 1 738 326 23 23 0 chr5 20122028 20122071 -132415188 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 738 318 281 50 71 chr5 20122171 20122454 -132414805 - B4A SINE B4 -14 278 2 1 738 28 29 0 0 chr5 20122621 20122656 -132414603 + AT_rich Low_complexity Low_complexity 1 35 0 1 738 232 333 0 0 chr5 20123117 20123192 -132414067 + ID4 SINE ID 2 76 -7 1 738 254 196 150 53 chr5 20123204 20123317 -132413942 - L1MC LINE L1 -1288 4858 4735 1 738 426 127 0 0 chr5 20123629 20123700 -132413559 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 738 4116 49 4 12 chr5 20124292 20124804 -132412455 - L1_Mus1 LINE L1 0 6567 6060 1 738 924 239 77 93 chr5 20125433 20125500 -132411759 - MTE2b LTR MaLR -7 372 326 1 738 1207 68 0 0 chr5 20125500 20125647 -132411612 + B1_Mm SINE Alu 1 147 0 1 738 944 239 77 93 chr5 20125647 20125957 -132411302 - MTE2b LTR MaLR -54 325 1 1 738 215 153 15 92 chr5 20126335 20126400 -132410859 + T-rich Low_complexity Low_complexity 1 60 0 1 738 531 0 0 0 chr5 20129288 20129347 -132407912 + (TCTCTG)n Simple_repeat Simple_repeat 3 61 0 1 738 378 265 161 46 chr5 20129541 20129846 -132407413 - L1MA8 LINE L1 -35 6256 5917 1 738 474 18 0 0 chr5 20130390 20130445 -132406814 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 738 531 301 90 37 chr5 20131283 20131659 -132405600 - L1M5 LINE L1 -464 5776 5381 1 738 1238 54 0 0 chr5 20131820 20131967 -132405292 + B1_Mus2 SINE Alu 1 147 0 1 738 9025 48 1 0 chr5 20132554 20133640 -132403619 + L1Md_F3 LINE L1 4500 5586 -297 1 738 8734 21 0 0 chr5 20133640 20134624 -132402635 + L1Md_F3 LINE L1 5587 6570 -14 1 738 980 180 147 31 chr5 20134875 20135185 -132402074 - RMER20B LTR ERVK -20 607 234 1 738 1493 218 29 15 chr5 20135261 20135601 -132401658 - Lx9 LINE L1 -408 7236 6892 1 738 447 290 98 52 chr5 20135653 20135716 -132401543 - L1MA9 LINE L1 -3 6309 6247 1 738 1637 31 0 20 chr5 20135716 20135912 -132401347 - B2_Mm1a SINE B2 -1 192 1 1 738 447 286 88 55 chr5 20135912 20136287 -132400972 - L1MA9 LINE L1 -66 6246 5853 1 738 220 26 24 71 chr5 20136299 20136341 -132400918 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 1 738 1708 271 102 62 chr5 20136343 20137777 -132399482 - L1MA9 LINE L1 -715 5597 4082 1 738 680 278 111 0 chr5 20137777 20137975 -132399284 + ID_B1 SINE B4 5 224 0 1 738 1708 272 124 71 chr5 20137975 20138027 -132399232 - L1MA9 LINE L1 -2059 4081 4038 1 738 310 276 136 17 chr5 20138036 20138272 -132398987 + L1M3 LINE L1 2248 2511 -3629 1 738 2113 170 52 48 chr5 20142269 20142688 -132394571 - MTC LTR MaLR 0 421 1 1 738 247 318 47 0 chr5 20142827 20142934 -132394325 - MLT1A1 LTR MaLR -16 392 281 1 738 452 174 28 39 chr5 20143217 20143396 -132393863 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 738 256 231 31 0 chr5 20143396 20143461 -132393798 + (CATA)n Simple_repeat Simple_repeat 4 70 0 1 738 919 126 0 12 chr5 20144339 20144500 -132392759 + (GAAA)n Simple_repeat Simple_repeat 3 161 0 1 738 795 262 121 49 chr5 20145222 20145587 -132391672 - MLT1D LTR MaLR -4 501 111 1 738 607 143 25 12 chr5 20145739 20145902 -132391357 + (TAGA)n Simple_repeat Simple_repeat 4 168 0 1 738 256 152 68 0 chr5 20145905 20145964 -132391295 - MLT1D LTR MaLR -533 94 32 1 738 350 282 86 54 chr5 20146065 20146286 -132390973 + LTR33 LTR ERVL 235 462 -53 1 738 216 303 100 28 chr5 20147650 20147830 -132389429 - L2c LINE L2 -173 3214 3022 1 738 507 33 0 0 chr5 20148907 20148968 -132388291 + (GGA)n Simple_repeat Simple_repeat 3 63 0 1 738 622 261 30 10 chr5 20149035 20149195 -132388064 + B3 SINE B2 5 167 -49 1 738 963 129 0 0 chr5 20149195 20149350 -132387909 + (CA)n Simple_repeat Simple_repeat 2 156 0 1 738 622 261 30 10 chr5 20149350 20149390 -132387869 + B3 SINE B2 168 208 -8 1 738 510 267 0 17 chr5 20150126 20150244 -132387015 + B1_Mur1 SINE Alu 1 116 -33 1 738 524 260 4 11 chr5 20150349 20150625 -132386634 + CT-rich Low_complexity Low_complexity 1 273 0 1 738 908 235 105 11 chr5 20151269 20151536 -132385723 + B4A SINE B4 1 292 0 1 738 288 262 12 0 chr5 20151541 20151621 -132385638 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 738 1081 89 6 0 chr5 20151758 20151915 -132385344 - RLTR1B LTR ERV1 0 512 355 1 738 569 62 12 0 chr5 20151932 20152012 -132385247 - RLTR1B LTR ERV1 -102 410 330 1 738 288 0 0 0 chr5 20152759 20152791 -132384468 + (CCCCCA)n Simple_repeat Simple_repeat 3 34 0 1 738 218 389 64 46 chr5 20153350 20153741 -132383518 + L2c LINE L2 2985 3382 -5 1 738 737 286 10 5 chr5 20154109 20154306 -132382953 + B3A SINE B2 1 198 0 1 738 2016 121 146 16 chr5 20155310 20155681 -132381578 - MTC LTR MaLR 0 421 3 1 738 682 126 101 29 chr5 20155947 20156086 -132381173 + B1_Mur4 SINE Alu 2 150 0 1 738 672 215 6 47 chr5 20157567 20157738 -132379521 - ORR1C2 LTR MaLR -54 330 167 1 738 446 297 110 53 chr5 20159597 20159878 -132377381 - MER68 LTR ERVL -264 299 3 1 738 477 50 0 0 chr5 20161828 20161888 -132375371 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 738 232 250 187 28 chr5 20162076 20162183 -132375076 - L2a LINE L2 -14 3412 3289 1 738 21 0 0 0 chr5 20162322 20162343 -132374916 + AT_rich Low_complexity Low_complexity 1 21 0 1 738 1661 42 0 0 chr5 20162350 20162543 -132374716 - B2_Mm1a SINE B2 0 193 1 1 738 346 240 39 31 chr5 20163602 20163731 -132373528 + ID_B1 SINE B4 87 216 -8 1 738 340 140 0 0 chr5 20163762 20163819 -132373440 + ID SINE ID 22 78 -146 1 738 327 177 0 0 chr5 20163829 20163891 -132373368 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 738 273 29 0 0 chr5 20164323 20164357 -132372902 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 738 297 0 0 0 chr5 20164357 20164389 -132372870 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 738 320 276 11 128 chr5 20164471 20164658 -132372601 - B4A SINE B4 -127 165 1 2 738 680 245 136 0 chr5 20164670 20164854 -132372405 - ID_B1 SINE B4 -3 221 13 2 738 30 21 0 21 chr5 20164863 20164881 -132372378 + AT_rich Low_complexity Low_complexity 1 18 0 2 738 1168 75 0 0 chr5 20164881 20165028 -132372231 + B1_Mus2 SINE Alu 1 147 0 2 738 30 21 0 21 chr5 20165028 20165057 -132372202 + AT_rich Low_complexity Low_complexity 1 29 0 2 738 453 316 133 0 chr5 20165078 20165274 -132371985 - L1MC1 LINE L1 -39 6294 6073 2 738 309 340 136 0 chr5 20169487 20169634 -132367625 - LTR31 LTR ERV1 -156 463 297 2 738 254 313 15 0 chr5 20169850 20169917 -132367342 + ID4_ SINE ID 2 69 -14 2 738 1023 260 148 36 chr5 20170199 20170694 -132366565 + Lx8 LINE L1 6895 7444 -29 2 738 231 292 0 0 chr5 20171496 20171602 -132365657 + (CA)n Simple_repeat Simple_repeat 2 107 0 2 738 261 83 0 0 chr5 20171639 20171675 -132365584 + (CTTTG)n Simple_repeat Simple_repeat 2 37 0 2 738 261 250 0 18 chr5 20171876 20171933 -132365326 + (CATG)n Simple_repeat Simple_repeat 3 58 0 2 738 476 361 20 67 chr5 20172789 20173086 -132364173 + MTE-int LTR MaLR 1 283 -1297 2 738 483 297 7 0 chr5 20173649 20173794 -132363465 - L1M3e LINE L1 -6844 186 41 2 738 23 0 0 0 chr5 20173915 20173938 -132363321 + AT_rich Low_complexity Low_complexity 1 23 0 2 738 509 281 144 8 chr5 20174117 20174485 -132362774 + L1M3 LINE L1 5352 5782 -407 2 738 562 260 167 35 chr5 20174553 20174843 -132362416 + ORR1E LTR MaLR 25 379 0 2 738 26 0 0 0 chr5 20176965 20176991 -132360268 + AT_rich Low_complexity Low_complexity 1 26 0 2 738 1386 50 0 0 chr5 20179281 20179460 -132357799 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 2 738 565 199 7 7 chr5 20183521 20183673 -132353586 + (CA)n Simple_repeat Simple_repeat 1 152 0 2 738 213 170 0 41 chr5 20183871 20183920 -132353339 + B2_Mm2 SINE B2 1 47 -148 2 738 32 43 0 0 chr5 20183973 20184019 -132353240 + AT_rich Low_complexity Low_complexity 1 46 0 2 738 484 237 55 73 chr5 20184030 20184194 -132353065 + RSINE1 SINE B4 4 164 -1 2 738 711 112 0 0 chr5 20184594 20184701 -132352558 + B2_Mm2 SINE B2 1 107 -88 2 739 186 350 48 16 chr5 20185512 20185637 -132351622 - MIRc SINE MIR -122 146 18 2 739 464 296 7 7 chr5 20186572 20186708 -132350551 + ID_B1 SINE B4 82 217 -7 2 739 330 26 0 0 chr5 20188469 20188508 -132348751 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 739 520 217 126 44 chr5 20188619 20188659 -132348600 - B3A SINE B2 0 198 166 2 739 396 0 0 0 chr5 20188659 20188703 -132348556 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 739 520 217 126 44 chr5 20188703 20188845 -132348414 - B3A SINE B2 -33 165 1 2 739 23 0 0 0 chr5 20189695 20189718 -132347541 + AT_rich Low_complexity Low_complexity 1 23 0 2 739 195 42 0 0 chr5 20190944 20190968 -132346291 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 739 1192 42 20 15 chr5 20192185 20192596 -132344663 + (TAGA)n Simple_repeat Simple_repeat 1 413 0 2 739 199 93 47 0 chr5 20192607 20192650 -132344609 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 2 739 617 289 85 35 chr5 20192710 20192934 -132344325 - L1MA4 LINE L1 -301 6002 5780 2 739 315 0 0 0 chr5 20192934 20192969 -132344290 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 739 617 287 87 35 chr5 20192969 20192985 -132344274 - L1MA4 LINE L1 -521 5779 5766 2 739 180 0 0 0 chr5 20192985 20193005 -132344254 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 2 739 617 287 87 35 chr5 20193005 20193091 -132344168 - L1MA4 LINE L1 -535 5765 5663 2 739 1521 98 28 107 chr5 20193110 20193429 -132343830 - ORR1B1 LTR MaLR -75 319 26 2 739 234 0 0 0 chr5 20193524 20193550 -132343709 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 739 237 215 109 29 chr5 20193618 20193726 -132343533 - L1_Mm LINE L1 -823 5057 4948 2 739 678 287 71 36 chr5 20193806 20194153 -132343106 - L1MA4 LINE L1 -1173 4970 4632 2 739 523 240 7 0 chr5 20194163 20194286 -132342973 + B1F SINE Alu 14 142 -7 2 739 370 234 32 119 chr5 20194320 20194343 -132342916 + MT2B LTR ERVL 143 154 -447 2 739 560 209 0 0 chr5 20194343 20194448 -132342811 + B1_Mus1 SINE Alu 1 105 -43 2 739 914 264 60 26 chr5 20194475 20194856 -132342403 - L1MA4 LINE L1 -1762 4381 3988 2 739 182 295 88 18 chr5 20194899 20195013 -132342246 + L2 LINE L2 2824 2945 -474 2 739 7278 97 9 4 chr5 20195449 20196227 -132341032 - RLTR13C1 LTR ERVK 0 983 200 2 739 1420 62 0 28 chr5 20196227 20196248 -132341011 - B2_Mm1a SINE B2 -16 177 161 2 739 423 0 0 0 chr5 20196248 20196295 -132340964 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2 739 1420 62 0 28 chr5 20196295 20196455 -132340804 - B2_Mm1a SINE B2 -33 160 1 2 739 7278 97 9 4 chr5 20196455 20196654 -132340605 - RLTR13C1 LTR ERVK -784 199 1 2 739 751 260 18 42 chr5 20196656 20196873 -132340386 + B3 SINE B2 1 212 -4 2 739 1231 113 37 5 chr5 20196999 20197186 -132340073 - B2_Mm2 SINE B2 -2 193 1 2 739 1002 61 0 0 chr5 20197211 20197343 -132339916 - L1_Mus2 LINE L1 -2 6564 6433 2 739 500 299 7 56 chr5 20198047 20198189 -132339070 + ID_B1 SINE B4 82 216 -8 2 739 259 336 134 0 chr5 20198728 20198862 -132338397 - L1M LINE L1 -2111 5884 5733 2 739 978 31 0 0 chr5 20199163 20199290 -132337969 - B1_Mus1 SINE Alu -10 138 12 2 739 342 206 64 27 chr5 20199306 20199416 -132337843 - L1M LINE L1 -758 5421 5308 2 739 307 294 131 0 chr5 20199469 20199622 -132337637 - MIRc SINE MIR -57 211 39 2 739 217 319 16 103 chr5 20199842 20199968 -132337291 - PB1D7 SINE Alu 0 120 6 2 739 3671 46 2 18 chr5 20200373 20200877 -132336382 - LTRIS2 LTR ERV1 0 564 69 2 739 1128 94 0 0 chr5 20201005 20201224 -132336035 + (TG)n Simple_repeat Simple_repeat 1 219 0 2 739 216 279 31 54 chr5 20202068 20202163 -132335096 + MIRc SINE MIR 69 161 -47 2 739 382 323 29 97 chr5 20202735 20202780 -132334479 - RSINE1 SINE B4 0 165 130 2 739 288 0 0 0 chr5 20202780 20202812 -132334447 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 739 382 323 29 97 chr5 20202812 20202941 -132334318 - RSINE1 SINE B4 -36 129 3 2 739 749 81 0 18 chr5 20203152 20203265 -132333994 + B1_Mur4 SINE Alu 5 115 -35 2 739 4285 146 11 19 chr5 20203463 20204160 -132333099 - RLTR17 LTR ERVK 0 692 1 2 739 189 0 0 0 chr5 20207286 20207307 -132329952 + (A)n Simple_repeat Simple_repeat 1 21 0 2 739 21 0 0 0 chr5 20210651 20210672 -132326587 + AT_rich Low_complexity Low_complexity 1 21 0 2 739 834 128 63 7 chr5 20210687 20210829 -132326430 - B1_Mur4 SINE Alu 0 150 1 2 739 276 53 0 0 chr5 20211902 20211940 -132325319 + (T)n Simple_repeat Simple_repeat 1 38 0 2 739 3631 68 30 2 chr5 20212672 20213141 -132324118 - RLTR45 LTR ERVK 0 482 1 2 739 423 0 0 0 chr5 20213170 20213217 -132324042 + (TAG)n Simple_repeat Simple_repeat 1 47 0 2 739 297 0 0 0 chr5 20213217 20213250 -132324009 + (CTA)n Simple_repeat Simple_repeat 1 33 0 2 739 263 264 0 53 chr5 20213743 20213819 -132323440 + Charlie2a DNA MER1_type 1534 1605 -1256 2 739 228 305 153 48 chr5 20213925 20214049 -132323210 + RSINE1 SINE B4 3 139 -26 2 739 21 36 0 0 chr5 20214054 20214082 -132323177 + AT_rich Low_complexity Low_complexity 1 28 0 2 739 5026 68 96 3 chr5 20214160 20214931 -132322328 + L1_Mus2 LINE L1 5512 6352 -214 2 739 10439 129 14 39 chr5 20214966 20215206 -132322053 + L1_Mus1 LINE L1 4099 4327 -1556 2 739 882 26 9 0 chr5 20215206 20215322 -132321937 + B1_Mm SINE Alu 31 147 0 2 739 10439 129 14 39 chr5 20215322 20216521 -132320738 + L1_Mus1 LINE L1 4328 5477 -406 2 739 2347 141 10 24 chr5 20216521 20216936 -132320323 - RLTR9E LTR ERVK 0 409 1 2 739 10439 53 4 2 chr5 20216936 20218028 -132319231 + L1_Mus1 LINE L1 5478 6566 -1 2 739 657 0 0 0 chr5 20218045 20218118 -132319141 + (GAGAA)n Simple_repeat Simple_repeat 5 77 0 2 739 1282 120 15 5 chr5 20218120 20218321 -132318938 + L1_Mus3 LINE L1 6384 6586 -52 2 739 268 217 33 0 chr5 20218381 20218441 -132318818 + ID_B1 SINE B4 156 217 -7 2 739 2332 148 39 5 chr5 20218541 20218922 -132318337 + ORR1B1 LTR MaLR 1 394 0 2 739 4522 69 12 2 chr5 20219233 20219813 -132317446 - LTRIS_Mus LTR ERV1 -1 586 1 2 739 4310 151 194 14 chr5 20220152 20220985 -132316274 - RLTR13C1 LTR ERVK 0 983 1 2 739 247 317 27 55 chr5 20221049 20221159 -132316100 - MER5B DNA MER1_type -69 109 3 2 739 4020 77 30 28 chr5 20221926 20222489 -132314770 - LTRIS2 LTR ERV1 0 564 1 2 739 1125 83 7 0 chr5 20223080 20223225 -132314034 + B1_Mus2 SINE Alu 2 147 0 2 739 4370 39 2 15 chr5 20224091 20224610 -132312649 - LTRIS3 LTR ERV1 0 512 1 2 739 587 218 81 0 chr5 20225144 20225268 -132311991 - B4 SINE B4 -74 218 85 2 739 487 62 0 165 chr5 20225276 20225373 -132311886 + MT2B LTR ERVL 207 287 -314 2 739 3153 132 48 23 chr5 20225355 20225427 -132311832 + RMER6A LTR ERVK 135 214 -542 2 739 1370 87 22 0 chr5 20225427 20225612 -132311647 + B2_Mm2 SINE B2 2 190 -5 2 739 3153 132 48 23 chr5 20225612 20226146 -132311113 + RMER6A LTR ERVK 215 756 0 2 739 2919 99 60 8 chr5 20226933 20227401 -132309858 - RMER19A LTR ERVK -245 492 1 2 739 27 62 0 0 chr5 20227426 20227474 -132309785 + AT_rich Low_complexity Low_complexity 1 48 0 2 739 510 236 62 23 chr5 20227509 20227639 -132309620 + B1_Mur1 SINE Alu 15 149 0 2 739 200 270 0 16 chr5 20227641 20227705 -132309554 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 739 225 354 30 15 chr5 20227823 20227955 -132309304 - B4A SINE B4 -155 137 4 2 739 1251 34 0 0 chr5 20229017 20229164 -132308095 + B1_Mus1 SINE Alu 2 148 0 2 739 342 307 90 26 chr5 20229422 20229656 -132307603 + L1MD LINE L1 4754 5002 -1144 2 739 378 288 68 50 chr5 20229657 20229798 -132307461 + RSINE1 SINE B4 2 152 -13 2 739 798 220 173 111 chr5 20229798 20230030 -132307229 + ORR1D1 LTR MaLR 1 228 -146 2 739 186 43 0 0 chr5 20230030 20230053 -132307206 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 2 739 798 220 173 111 chr5 20230053 20230172 -132307087 + ORR1D1 LTR MaLR 229 373 -1 2 739 378 288 68 50 chr5 20230172 20230191 -132307068 + RSINE1 SINE B4 153 165 0 2 739 658 313 59 23 chr5 20230537 20230841 -132306418 + L1ME1 LINE L1 5536 5850 -329 3 739 1269 162 37 60 chr5 20230841 20231224 -132306035 - MTA_Mm LTR MaLR 0 374 1 3 739 8973 40 14 1 chr5 20231224 20232308 -132304951 - MTA_Mm-int LTR MaLR 0 1098 1 3 739 3361 46 5 0 chr5 20232308 20232702 -132304557 - MTA_Mm LTR MaLR 0 396 1 3 739 480 158 0 0 chr5 20232702 20232784 -132304475 - ORR1D1 LTR MaLR -292 82 1 3 739 394 286 79 40 chr5 20232806 20233083 -132304176 + L1ME1 LINE L1 5867 6154 -25 3 739 480 239 0 0 chr5 20233183 20233325 -132303934 + (CA)n Simple_repeat Simple_repeat 2 143 0 3 739 363 226 0 0 chr5 20233349 20233451 -132303808 + (CA)n Simple_repeat Simple_repeat 1 102 0 3 739 381 302 54 89 chr5 20234918 20235176 -132302083 + MLT1E1 LTR MaLR 302 550 -104 3 739 986 264 36 57 chr5 20235215 20235721 -132301538 - RLTR12B LTR ERVK -73 495 1 3 739 266 260 50 50 chr5 20235725 20235826 -132301433 + MLT1E1 LTR MaLR 580 680 0 3 739 446 271 27 27 chr5 20235871 20235981 -132301278 - PB1D10 SINE Alu -7 110 1 3 739 724 283 6 0 chr5 20236091 20236250 -132301009 - RSINE1 SINE B4 0 165 6 3 739 198 0 0 0 chr5 20236683 20236705 -132300554 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 739 570 206 96 6 chr5 20236715 20236871 -132300388 - B3 SINE B2 -46 170 1 3 739 4291 88 26 7 chr5 20238117 20238734 -132298525 - Lx2 LINE L1 0 6997 6369 3 739 246 287 69 62 chr5 20238742 20238753 -132298506 + MLT1A1 LTR MaLR 15 25 -383 3 739 225 0 0 0 chr5 20238753 20238778 -132298481 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 739 261 109 0 0 chr5 20238778 20238823 -132298436 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 739 246 287 69 62 chr5 20238823 20238955 -132298304 + MLT1A1 LTR MaLR 26 159 -249 3 739 273 277 0 15 chr5 20238952 20239018 -132298241 + tRNA-Ala-GCY_ tRNA tRNA 3 67 -8 3 739 1297 265 135 35 chr5 20239595 20239917 -132297342 - MTD-int LTR MaLR -340 918 470 3 739 2113 113 3 16 chr5 20239917 20240232 -132297027 + RLTR10E LTR ERVK 1 311 0 3 739 1297 270 93 57 chr5 20240232 20240672 -132296587 - MTD-int LTR MaLR -775 483 9 3 739 1224 259 96 8 chr5 20240701 20241067 -132296192 - MTD LTR MaLR -21 398 1 3 739 379 287 24 18 chr5 20241086 20241253 -132296006 + L1MA5 LINE L1 5766 5933 -367 3 739 372 152 0 0 chr5 20241259 20241325 -132295934 + GA-rich Low_complexity Low_complexity 1 66 0 3 739 260 278 133 12 chr5 20241411 20241627 -132295632 + L1MA5 LINE L1 6058 6296 -4 3 739 418 287 209 29 chr5 20241765 20242009 -132295250 + B4A SINE B4 1 288 -4 3 739 1223 67 75 32 chr5 20242732 20242918 -132294341 - B2_Mm2 SINE B2 0 195 2 3 739 629 200 77 0 chr5 20243088 20243218 -132294041 + B1_Mur3 SINE Alu 3 142 -7 3 739 1270 27 0 0 chr5 20243230 20243377 -132293882 + B1_Mm SINE Alu 1 147 0 3 739 2025 251 46 23 chr5 20243493 20244481 -132292778 - Lx5 LINE L1 -17 7033 6117 3 739 790 191 96 23 chr5 20244490 20244710 -132292549 + RMER4B LTR ERVK 17 252 -333 3 739 393 101 19 39 chr5 20244742 20244845 -132292414 + (CTG)n Simple_repeat Simple_repeat 2 102 0 3 739 394 205 22 254 chr5 20244855 20245130 -132292129 + RMER4B LTR ERVK 343 599 -12 3 739 1479 209 75 18 chr5 20245328 20245659 -132291600 - Lx9 LINE L1 -155 7489 7140 3 739 1683 184 57 21 chr5 20245665 20245751 -132291508 + Lx9 LINE L1 6823 6923 -721 3 739 2920 54 40 22 chr5 20245751 20246151 -132291108 - MTB_Mm LTR MaLR 0 407 1 3 739 1683 184 57 21 chr5 20246151 20246398 -132290861 + Lx9 LINE L1 6924 7168 -476 3 739 246 282 25 13 chr5 20246710 20246789 -132290470 + MIR3 SINE MIR 107 186 -22 3 739 2586 131 18 29 chr5 20246965 20247407 -132289852 - RLTR9B LTR ERVK 0 437 1 3 739 1999 155 141 12 chr5 20248728 20248763 -132288496 + RMER4A LTR ERVK 1 35 -431 3 739 225 0 0 0 chr5 20248763 20248788 -132288471 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 739 1999 155 141 12 chr5 20248788 20249164 -132288095 + RMER4A LTR ERVK 36 464 -2 3 739 291 177 222 103 chr5 20249170 20249296 -132287963 + RMER4A LTR ERVK 326 466 0 3 739 691 240 107 74 chr5 20249296 20249606 -132287653 + Lx8 LINE L1 6626 6945 -528 3 739 379 125 38 0 chr5 20251233 20251313 -132285946 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 3 739 1453 79 16 0 chr5 20251430 20251620 -132285639 - B2_Mm2 SINE B2 -1 194 2 3 739 415 245 135 83 chr5 20251922 20252078 -132285181 + RSINE1 SINE B4 2 165 0 3 739 376 237 17 42 chr5 20252102 20252221 -132285038 - PB1D10 SINE Alu -1 116 1 3 739 519 219 26 0 chr5 20255030 20255144 -132282115 + PB1D10 SINE Alu 1 117 0 3 739 233 274 246 9 chr5 20257472 20257586 -132279673 - B1F1 SINE Alu -8 141 1 3 739 191 205 0 49 chr5 20257932 20257973 -132279286 - MIR SINE MIR -61 147 109 3 739 500 294 176 8 chr5 20258524 20258774 -132278485 - B4A SINE B4 0 292 1 3 739 440 219 123 13 chr5 20258797 20259024 -132278235 - Charlie1 DNA MER1_type -45 2736 2485 3 739 405 0 0 0 chr5 20260316 20260361 -132276898 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 739 2611 143 42 18 chr5 20260740 20261244 -132276015 + RMER20A LTR ERVK 1 516 0 3 739 305 277 51 58 chr5 20261244 20261382 -132275877 - L1MD LINE L1 -1249 4897 4761 3 739 463 282 44 19 chr5 20261381 20261540 -132275719 + L1M2 LINE L1 4675 4837 -1306 3 739 237 349 125 23 chr5 20262421 20262597 -132274662 + MER21B LTR ERV1 194 387 -476 3 739 1167 58 0 0 chr5 20263185 20263323 -132273936 + B1_Mus1 SINE Alu 1 138 -10 3 739 1052 112 0 0 chr5 20263364 20263516 -132273743 + B2_Mm2 SINE B2 2 153 -42 3 739 191 36 0 35 chr5 20263516 20263545 -132273714 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 3 739 2927 69 6 45 chr5 20263683 20264050 -132273209 - ORR1A1-int LTR MaLR -571 1221 874 3 739 755 130 36 167 chr5 20264050 20264272 -132272987 - B2_Mm2 SINE B2 0 195 3 3 739 2927 69 6 45 chr5 20264272 20264372 -132272887 - ORR1A1-int LTR MaLR -919 873 772 3 739 24 32 0 0 chr5 20265448 20265479 -132271780 + AT_rich Low_complexity Low_complexity 1 31 0 3 739 28 61 0 0 chr5 20266186 20266235 -132271024 + AT_rich Low_complexity Low_complexity 1 49 0 3 739 189 74 0 0 chr5 20266671 20266698 -132270561 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 739 198 0 0 0 chr5 20267269 20267291 -132269968 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 739 23 54 0 0 chr5 20267970 20268007 -132269252 + AT_rich Low_complexity Low_complexity 1 37 0 3 739 204 211 77 0 chr5 20268043 20268095 -132269164 - MIRm SINE MIR -12 264 209 3 739 1067 55 0 7 chr5 20268224 20268370 -132268889 + B1_Mm SINE Alu 2 146 -1 3 739 366 80 0 0 chr5 20268374 20268424 -132268835 + (A)n Simple_repeat Simple_repeat 1 50 0 3 739 521 257 36 7 chr5 20269330 20269467 -132267792 + B1F1 SINE Alu 1 141 -8 3 739 252 0 0 0 chr5 20269763 20269791 -132267468 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 739 231 164 55 0 chr5 20269959 20270014 -132267245 + (CAGCG)n Simple_repeat Simple_repeat 5 62 0 3 739 400 256 0 0 chr5 20270183 20270261 -132266998 - ID4_ SINE ID -1 82 5 3 739 316 252 80 45 chr5 20271432 20271544 -132265715 + RSINE1 SINE B4 3 118 -47 3 739 4979 91 6 1 chr5 20273414 20274095 -132263164 + Lx2 LINE L1 6314 6997 0 3 739 253 274 107 10 chr5 20274579 20274682 -132262577 + B4 SINE B4 1 113 -179 3 739 27 29 0 0 chr5 20274721 20274755 -132262504 + AT_rich Low_complexity Low_complexity 1 34 0 3 739 1209 75 97 11 chr5 20274778 20274953 -132262306 + B2_Mm1a SINE B2 1 190 -3 3 739 292 200 253 11 chr5 20275050 20275141 -132262118 - PB1D10 SINE Alu 0 117 5 3 739 226 274 199 30 chr5 20275215 20275647 -132261612 - L1MEd LINE L1 -4910 1209 705 3 739 8381 18 0 0 chr5 20275740 20276674 -132260585 - L1Md_A LINE L1 0 6582 5649 3 739 270 275 21 62 chr5 20276676 20276773 -132260486 - L1MEd LINE L1 -5548 571 479 3 739 240 231 19 0 chr5 20277461 20277513 -132259746 + B3A SINE B2 1 53 -145 3 739 1217 62 0 0 chr5 20277520 20277666 -132259593 + B1_Mus2 SINE Alu 2 147 0 3 739 228 35 0 0 chr5 20277666 20277695 -132259564 + (A)n Simple_repeat Simple_repeat 1 29 0 3 739 493 264 64 0 chr5 20277705 20277830 -132259429 + B3 SINE B2 48 180 -36 3 739 437 282 18 0 chr5 20278299 20278409 -132258850 - L2a LINE L2 -2 3424 3313 3 739 24 32 0 0 chr5 20280186 20280217 -132257042 + AT_rich Low_complexity Low_complexity 1 31 0 3 739 21 71 0 0 chr5 20280308 20280350 -132256909 + AT_rich Low_complexity Low_complexity 1 42 0 3 739 486 0 0 0 chr5 20281250 20281304 -132255955 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 739 406 326 7 35 chr5 20281367 20281510 -132255749 + RSINE1 SINE B4 22 160 -5 3 739 334 236 22 26 chr5 20282690 20282801 -132254458 - MTE2b LTR MaLR -311 108 1 3 739 323 186 17 0 chr5 20285337 20285396 -132251863 - MTEa LTR MaLR -319 60 1 3 739 686 165 105 0 chr5 20285435 20285568 -132251691 - B1F2 SINE Alu 0 149 3 3 739 695 197 21 21 chr5 20285797 20285942 -132251317 - B1_Mur2 SINE Alu -1 148 4 3 739 248 269 11 0 chr5 20286121 20286214 -132251045 + CT-rich Low_complexity Low_complexity 1 94 0 3 739 300 279 142 39 chr5 20286214 20286341 -132250918 - B1_Mur2 SINE Alu -8 141 2 3 739 277 249 32 31 chr5 20286554 20286628 -132250631 - B1_Mus1 SINE Alu -71 77 2 3 739 251 203 14 14 chr5 20286960 20287030 -132250229 - L1M5 LINE L1 -2126 4020 3951 3 739 281 259 149 41 chr5 20287145 20287266 -132249993 - B4 SINE B4 -27 265 132 3 739 236 293 110 10 chr5 20287359 20287459 -132249800 + MER33 DNA MER1_type 9 118 -206 3 739 395 353 33 8 chr5 20288655 20288775 -132248484 - B1F1 SINE Alu -26 123 1 3 739 398 202 37 25 chr5 20289151 20289232 -132248027 - PB1D10 SINE Alu -11 106 25 3 739 575 261 135 5 chr5 20289442 20289627 -132247632 + B3 SINE B2 2 210 -6 3 739 321 279 9 19 chr5 20290332 20290438 -132246821 + Lx8 LINE L1 6464 6568 -905 3 739 1525 258 126 7 chr5 20290449 20291048 -132246211 + Lx8 LINE L1 6592 7284 -189 3 739 750 161 88 0 chr5 20291404 20291541 -132245718 - B1_Mur1 SINE Alu 0 149 1 3 739 791 250 88 6 chr5 20291635 20291816 -132245443 - B3 SINE B2 -19 197 2 3 739 180 0 0 0 chr5 20292107 20292127 -132245132 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 739 982 73 73 0 chr5 20293187 20293324 -132243935 - B1_Mus1 SINE Alu 0 148 2 3 739 388 281 62 33 chr5 20293494 20293525 -132243734 + CYRA11_Mm Unknown Y-chromosome 140 176 -441 4 739 882 163 144 21 chr5 20293525 20293713 -132243546 - URR1A DNA MER1_type -3 223 13 4 739 731 219 70 65 chr5 20293906 20294121 -132243138 - B3 SINE B2 0 216 1 4 739 432 231 68 90 chr5 20294891 20295024 -132242235 + RSINE1 SINE B4 2 131 -34 4 739 299 207 34 79 chr5 20295175 20295264 -132241995 + B4 SINE B4 79 163 -129 4 739 497 254 60 23 chr5 20295188 20295321 -132241938 + B1_Mur2 SINE Alu 6 143 -6 4 739 660 287 111 19 chr5 20296847 20297262 -132239997 - L1_Rod LINE L1 -508 5792 5278 4 739 378 210 135 39 chr5 20297478 20297582 -132239677 - B1_Mus2 SINE Alu -10 137 24 4 739 611 227 62 44 chr5 20297582 20297663 -132239596 - L1_Rod LINE L1 -1053 5090 4938 4 739 3656 135 110 3 chr5 20297663 20298288 -132238971 + RLTR17 LTR ERVK 1 692 0 4 739 611 219 40 50 chr5 20298288 20298433 -132238826 - L1_Rod LINE L1 -910 4937 4791 4 739 734 252 52 57 chr5 20298437 20298647 -132238612 + B3 SINE B2 2 210 -6 4 739 1105 286 148 9 chr5 20298705 20299393 -132237866 - L1M2 LINE L1 -1289 4854 4071 4 739 292 204 108 0 chr5 20299390 20299483 -132237776 + L1M2 LINE L1 4603 4705 -1438 4 739 243 0 0 0 chr5 20299714 20299741 -132237518 + (GA)n Simple_repeat Simple_repeat 1 27 0 4 739 931 81 0 8 chr5 20300746 20300871 -132236388 - B1_Mus2 SINE Alu -23 124 1 4 739 30 45 0 0 chr5 20300943 20300987 -132236272 + AT_rich Low_complexity Low_complexity 1 44 0 4 739 48 0 0 0 chr5 20301593 20301641 -132235618 + AT_rich Low_complexity Low_complexity 1 48 0 4 739 1298 216 70 52 chr5 20302581 20303022 -132234237 + RLTR16 LTR ERVK 1 493 -12 4 739 268 268 167 44 chr5 20303127 20303307 -132233952 + L1MC4 LINE L1 6820 7021 -1021 4 739 1077 292 86 18 chr5 20303550 20304294 -132232965 - Lx8 LINE L1 -1554 5919 5082 4 739 852 131 20 46 chr5 20304392 20304535 -132232724 + B1_Mus1 SINE Alu 1 141 -7 4 739 355 49 32 16 chr5 20304535 20304597 -132232662 + (CAAA)n Simple_repeat Simple_repeat 1 63 0 4 739 299 224 0 26 chr5 20305464 20305542 -132231717 - ID4 SINE ID -6 77 2 4 739 1162 77 121 23 chr5 20305873 20306047 -132231212 - B2_Mm2 SINE B2 -3 192 2 4 739 396 0 0 0 chr5 20306804 20306848 -132230411 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 739 795 179 98 22 chr5 20308763 20308946 -132228313 + B3A SINE B2 2 198 0 4 739 543 226 29 22 chr5 20309295 20309431 -132227828 + B1_Mur1 SINE Alu 2 138 -11 4 739 450 0 0 0 chr5 20309435 20309485 -132227774 + (CCA)n Simple_repeat Simple_repeat 1 50 0 4 739 389 253 200 6 chr5 20309778 20309953 -132227306 - ID_B1 SINE B4 -14 210 2 4 739 353 206 0 14 chr5 20310248 20310322 -132226937 - PB1D7 SINE Alu 0 120 48 4 739 559 205 23 54 chr5 20310339 20310468 -132226791 + B3 SINE B2 86 210 -6 4 739 22 0 0 0 chr5 20310875 20310897 -132226362 + AT_rich Low_complexity Low_complexity 1 22 0 4 739 226 305 134 0 chr5 20310903 20310985 -132226274 + ID_B1 SINE B4 83 175 -49 4 739 1179 81 0 0 chr5 20311194 20311342 -132225917 - B1_Mus1 SINE Alu 0 148 1 4 739 187 253 21 84 chr5 20311450 20311545 -132225714 + L3 LINE CR1 2163 2251 -2238 4 739 650 123 8 34 chr5 20312557 20312675 -132224584 + URR1B DNA MER1_type 111 225 0 4 739 236 291 105 0 chr5 20312675 20312760 -132224499 + B4A SINE B4 188 281 -11 4 739 304 290 180 0 chr5 20312757 20312857 -132224402 + B1_Mur2 SINE Alu 16 133 -16 4 739 330 87 0 0 chr5 20312876 20312922 -132224337 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 4 739 320 324 46 28 chr5 20314029 20314137 -132223122 - ID_B1 SINE B4 -32 192 83 4 739 362 298 158 18 chr5 20314136 20314307 -132222952 - MER82 DNA MER2_type -458 195 1 4 739 737 180 23 0 chr5 20314789 20314917 -132222342 + B1_Mus1 SINE Alu 18 148 0 4 739 247 367 38 98 chr5 20314917 20314964 -132222295 + B4A SINE B4 118 265 -27 4 739 934 110 36 109 chr5 20315563 20315726 -132221533 - B2_Mm2 SINE B2 -4 191 36 4 739 1596 42 0 5 chr5 20315726 20315918 -132221341 - B2_Mm1t SINE B2 -1 192 2 4 739 934 110 36 109 chr5 20315918 20315947 -132221312 - B2_Mm2 SINE B2 -160 35 13 4 92 257 186 57 0 chr5 20316128 20316198 -132221061 - L1MA4 LINE L1 -124 6176 6103 4 740 296 264 92 26 chr5 20316224 20316367 -132220892 - L1MA4 LINE L1 -287 6013 5859 4 740 1270 189 41 153 chr5 20316367 20316785 -132220474 + ORR1D1 LTR MaLR 3 373 -1 4 740 402 294 112 16 chr5 20316833 20317089 -132220170 - L1MA4 LINE L1 -542 5755 5473 4 740 344 273 291 0 chr5 20317203 20317368 -132219891 - B3 SINE B2 -3 213 1 4 740 26 50 0 0 chr5 20318235 20318275 -132218984 + AT_rich Low_complexity Low_complexity 1 40 0 4 740 291 316 60 17 chr5 20319240 20319356 -132217903 + MER5A DNA MER1_type 1 121 -68 4 740 441 231 46 0 chr5 20319510 20319618 -132217641 - PB1D7 SINE Alu -2 118 6 4 740 180 0 0 0 chr5 20319827 20319847 -132217412 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 4 740 1248 41 0 0 chr5 20321469 20321616 -132215643 + B1_Mm SINE Alu 1 147 0 4 740 259 288 68 0 chr5 20322497 20322556 -132214703 + RSINE1 SINE B4 18 80 -85 4 740 1165 44 0 0 chr5 20322800 20322936 -132214323 + B1_Mus2 SINE Alu 2 137 -10 4 740 447 299 37 15 chr5 20323687 20323823 -132213436 + RSINE1 SINE B4 16 154 -11 4 740 442 266 44 38 chr5 20324122 20324282 -132212977 + RSINE1 SINE B4 3 163 -2 4 740 291 146 0 0 chr5 20324440 20324495 -132212764 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 740 2899 132 86 2 chr5 20324768 20325255 -132212004 + RLTR11A LTR ERVK 1 528 0 4 740 270 0 0 0 chr5 20325380 20325410 -132211849 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 740 1262 88 17 0 chr5 20325620 20325801 -132211458 + B2_Mm1t SINE B2 4 187 -6 4 740 335 257 14 0 chr5 20326360 20326430 -132210829 + ID4_ SINE ID 2 72 -11 4 740 219 36 0 0 chr5 20326451 20326479 -132210780 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 740 340 216 108 0 chr5 20326490 20326564 -132210695 - PB1D9 SINE Alu -34 86 5 4 740 2135 231 30 81 chr5 20327973 20329005 -132208254 + RMER17B LTR ERVK 1 899 -9 4 740 21 57 0 0 chr5 20329201 20329236 -132208023 + AT_rich Low_complexity Low_complexity 1 35 0 4 740 4430 12 2 0 chr5 20329404 20329896 -132207363 + MT2_Mm LTR ERVL 1 493 0 4 740 35053 13 7 0 chr5 20329896 20335221 -132202038 + MERVL-int LTR ERVL 1 5360 -125 4 740 390 167 46 35 chr5 20335221 20335308 -132201951 + ORR1A3-int LTR MaLR 553 640 -1323 4 740 302 0 0 0 chr5 20335308 20335346 -132201913 + MERVL-int LTR ERVL 5448 5485 0 4 740 4430 12 2 0 chr5 20335346 20335838 -132201421 + MT2_Mm LTR ERVL 1 493 0 4 740 4096 13 0 0 chr5 20335904 20336364 -132200895 + L1Md_A LINE L1 6123 6582 0 4 740 253 340 72 78 chr5 20337274 20337522 -132199737 + MIR SINE MIR 20 259 -3 4 740 227 330 99 10 chr5 20338762 20338863 -132198396 + ORR1E LTR MaLR 22 131 -228 4 740 284 286 76 45 chr5 20339043 20339175 -132198084 + MLT1A1 LTR MaLR 267 402 -6 4 740 207 100 0 0 chr5 20339195 20339225 -132198034 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 4 740 358 302 103 36 chr5 20339235 20339537 -132197722 - L1MB7 LINE L1 -55 6129 5808 4 740 1406 67 6 6 chr5 20340209 20340390 -132196869 - B2_Mm2 SINE B2 -14 181 1 4 740 430 302 52 0 chr5 20340646 20340762 -132196497 + B1_Mur2 SINE Alu 8 129 -20 4 740 543 31 0 0 chr5 20340765 20340830 -132196429 + (GGGA)n Simple_repeat Simple_repeat 4 68 0 4 740 993 163 0 0 chr5 20340832 20341010 -132196249 + GA-rich Low_complexity Low_complexity 1 178 0 4 740 636 0 36 0 chr5 20341008 20341092 -132196167 + (GGAAA)n Simple_repeat Simple_repeat 2 88 0 4 740 360 64 0 0 chr5 20341090 20341137 -132196122 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 740 359 261 117 14 chr5 20341186 20341335 -132195924 + L1M5 LINE L1 5589 5752 -427 4 740 4499 135 17 9 chr5 20341720 20342470 -132194789 - RMER6A LTR ERVK 0 756 1 4 740 1596 174 42 0 chr5 20342470 20342780 -132194479 - RMER6-int LTR ERVK -2 3175 2853 4 740 1364 129 15 54 chr5 20342806 20343067 -132194192 - RMER6-int LTR ERVK -403 2774 2524 4 740 2983 124 110 18 chr5 20343080 20343636 -132193623 - RMER6-int LTR ERVK -2563 614 8 4 740 1374 153 51 4 chr5 20343687 20343962 -132193297 + MYSERV6-int LTR ERVK 8672 8959 0 4 740 1424 168 158 162 chr5 20343963 20344426 -132192833 + RMER6B LTR ERVK 1 461 0 4 740 183 268 295 19 chr5 20344845 20345001 -132192258 - MIR SINE MIR -34 228 30 4 740 324 0 0 0 chr5 20345084 20345120 -132192139 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 740 25 0 0 0 chr5 20347133 20347158 -132190101 + AT_rich Low_complexity Low_complexity 1 25 0 4 740 1201 27 7 7 chr5 20347197 20347344 -132189915 + B1_Mm SINE Alu 1 147 0 4 740 453 92 0 0 chr5 20347947 20348023 -132189236 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 740 22 0 0 0 chr5 20348465 20348487 -132188772 + AT_rich Low_complexity Low_complexity 1 22 0 4 740 213 274 0 0 chr5 20348998 20349060 -132188199 + (CATA)n Simple_repeat Simple_repeat 2 63 0 4 740 483 238 60 0 chr5 20349087 20349238 -132188021 - L1MA4 LINE L1 -383 5917 5758 4 740 250 54 54 0 chr5 20349404 20349441 -132187818 - B1_Mus2 SINE Alu -17 130 92 4 740 240 59 0 0 chr5 20349510 20349544 -132187715 + (G)n Simple_repeat Simple_repeat 1 34 0 4 740 389 265 69 0 chr5 20350352 20350454 -132186805 - B1F SINE Alu -32 117 9 4 740 305 332 48 11 chr5 20350609 20350795 -132186464 + RCHARR1 DNA MER1_type 13 205 -769 4 740 282 116 0 0 chr5 20350795 20350838 -132186421 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 740 865 209 29 61 chr5 20350864 20351109 -132186150 + RCHARR1 DNA MER1_type 308 544 -430 4 740 626 258 173 16 chr5 20351108 20351293 -132185966 + B4 SINE B4 7 220 -72 4 740 21 0 0 0 chr5 20351293 20351314 -132185945 + AT_rich Low_complexity Low_complexity 1 21 0 4 740 180 111 0 0 chr5 20351314 20351341 -132185918 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 4 740 21 0 0 0 chr5 20351664 20351685 -132185574 + AT_rich Low_complexity Low_complexity 1 21 0 4 740 289 254 138 76 chr5 20351934 20352079 -132185180 + RSINE1 SINE B4 2 155 -10 4 740 438 94 0 0 chr5 20352089 20352153 -132185106 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 740 1623 36 0 0 chr5 20353415 20353607 -132183652 + B2_Mm1a SINE B2 2 193 0 5 740 348 66 164 0 chr5 20353818 20353838 -132183421 - B2_Mm1a SINE B2 -2 191 162 5 740 351 0 0 0 chr5 20353838 20353877 -132183382 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 740 348 66 164 0 chr5 20353877 20353917 -132183342 - B2_Mm1a SINE B2 -32 161 122 5 740 1200 94 61 0 chr5 20353945 20353965 -132183294 - B2_Mm1t SINE B2 -2 191 162 5 740 207 0 0 0 chr5 20353965 20353988 -132183271 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 740 1200 94 61 0 chr5 20353988 20354147 -132183112 - B2_Mm1t SINE B2 -32 161 2 5 740 530 271 45 6 chr5 20354174 20354330 -132182929 + RSINE1 SINE B4 2 163 -2 5 740 865 212 64 0 chr5 20354427 20354630 -132182629 - B3 SINE B2 0 216 1 5 740 556 217 70 0 chr5 20354827 20354956 -132182303 + B1_Mur1 SINE Alu 1 138 -11 5 740 567 108 19 10 chr5 20355233 20355336 -132181923 + (TTCC)n Simple_repeat Simple_repeat 3 106 0 5 740 475 354 68 32 chr5 20355363 20355614 -132181645 - MLT1L LTR MaLR -317 293 34 5 740 313 302 114 45 chr5 20355711 20355912 -132181347 + MLT1K LTR MaLR 374 588 -7 5 740 2397 168 102 10 chr5 20356015 20356509 -132180750 + RLTR20B2 LTR ERVK 1 569 -9 5 740 603 272 66 43 chr5 20356760 20356971 -132180288 + B3A SINE B2 1 216 0 5 740 1181 63 0 0 chr5 20359076 20359219 -132178040 + B1_Mus2 SINE Alu 1 143 -4 5 740 297 0 0 0 chr5 20359220 20359253 -132178006 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5 740 26 30 0 0 chr5 20359290 20359323 -132177936 + AT_rich Low_complexity Low_complexity 1 33 0 5 740 423 56 0 0 chr5 20359720 20359774 -132177485 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 740 707 207 21 0 chr5 20359775 20359920 -132177339 - B1_Mur1 SINE Alu -1 148 1 5 740 219 381 0 0 chr5 20360369 20360432 -132176827 + ID4_ SINE ID 2 64 -19 5 740 1011 68 0 0 chr5 20361855 20362016 -132175243 + L1_Mus1 LINE L1 6430 6567 0 5 740 248 361 40 20 chr5 20362370 20362469 -132174790 + MIRb SINE MIR 51 151 -117 5 740 1084 73 0 0 chr5 20362472 20362608 -132174651 + B1_Mus1 SINE Alu 2 137 -11 5 740 252 59 0 0 chr5 20362608 20362642 -132174617 + (GGGGA)n Simple_repeat Simple_repeat 4 37 0 5 740 387 0 0 0 chr5 20363478 20363521 -132173738 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 740 231 61 0 0 chr5 20363527 20363560 -132173699 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 5 740 450 308 8 40 chr5 20363589 20363714 -132173545 + RSINE1 SINE B4 45 165 0 5 740 242 296 55 110 chr5 20363991 20364154 -132173105 - RSINE1 SINE B4 -8 157 4 5 740 2906 77 2 0 chr5 20364822 20365225 -132172034 - Lx LINE L1 -515 6139 5736 5 740 946 248 22 9 chr5 20365225 20365453 -132171806 - B4A SINE B4 -60 232 2 5 740 661 24 0 0 chr5 20365519 20365604 -132171655 + L1Md_T LINE L1 6498 6582 0 5 740 186 43 0 0 chr5 20366033 20366056 -132171203 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 740 384 244 79 29 chr5 20366155 20366294 -132170965 + B1F SINE Alu 1 146 -3 5 740 1328 138 28 0 chr5 20367359 20367576 -132169683 - URR1A DNA MER1_type -1 225 3 5 740 34 0 0 0 chr5 20367727 20367761 -132169498 + AT_rich Low_complexity Low_complexity 1 34 0 5 740 1165 102 45 11 chr5 20367846 20368025 -132169234 + B2_Mm2 SINE B2 3 187 -8 5 740 662 101 157 16 chr5 20368532 20368653 -132168606 + B1_Mur3 SINE Alu 12 149 0 5 740 248 175 0 17 chr5 20368653 20368711 -132168548 + (CAAA)n Simple_repeat Simple_repeat 4 60 0 5 740 791 136 9 10 chr5 20368722 20368856 -132168403 + B2_Mm2 SINE B2 2 143 -73 5 740 290 139 253 11 chr5 20368838 20368925 -132168334 + RMER17C LTR ERVK 169 276 -134 5 740 405 285 42 6 chr5 20368976 20369108 -132168151 - B3 SINE B2 -7 191 62 5 740 2281 74 29 13 chr5 20369715 20370029 -132167230 + ORR1A2 LTR MaLR 1 319 -8 5 740 841 172 69 23 chr5 20370036 20370209 -132167050 + ORR1A2-int LTR MaLR 8 188 -1775 5 740 1541 73 22 31 chr5 20370188 20370415 -132166844 + ORR1A2-int LTR MaLR 893 1117 -846 5 740 495 235 117 7 chr5 20370860 20371014 -132166245 - ID_B1 SINE B4 -3 221 51 5 740 252 77 0 0 chr5 20371491 20371530 -132165729 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 740 589 234 98 84 chr5 20371938 20372223 -132165036 - B4A SINE B4 -1 291 3 5 740 26 30 0 0 chr5 20372225 20372258 -132165001 + AT_rich Low_complexity Low_complexity 1 33 0 5 740 1291 81 40 0 chr5 20372771 20372945 -132164314 + B2_Mm2 SINE B2 1 181 -14 5 740 660 91 20 0 chr5 20373269 20373368 -132163891 - B1_Mus2 SINE Alu -1 146 46 5 740 304 217 164 62 chr5 20373302 20373430 -132163829 - MT2B LTR ERVL -337 264 124 5 740 334 298 144 43 chr5 20373442 20373676 -132163583 + L1MC4 LINE L1 6641 6931 -1111 5 740 379 286 30 38 chr5 20373773 20373904 -132163355 + RSINE1 SINE B4 8 137 -28 5 740 586 235 129 4 chr5 20374162 20374410 -132162849 + L1MC4 LINE L1 7509 7787 -255 5 740 257 180 145 16 chr5 20374992 20375054 -132162205 + 4.5SRNA scRNA scRNA 17 86 -8 5 740 652 35 12 0 chr5 20375011 20375096 -132162163 + B1_Mus2 SINE Alu 47 132 -15 5 740 236 53 0 26 chr5 20375099 20375138 -132162121 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5 740 1234 174 9 5 chr5 20375258 20375472 -132161787 + B3 SINE B2 2 216 0 5 740 555 202 0 0 chr5 20375506 20375630 -132161629 + GA-rich Low_complexity Low_complexity 2 125 0 5 740 289 228 8 0 chr5 20375793 20375863 -132161396 + B3 SINE B2 1 75 -120 5 740 321 26 0 0 chr5 20376002 20376040 -132161219 + (GAAAA)n Simple_repeat Simple_repeat 1 38 0 5 740 198 0 0 0 chr5 20376231 20376253 -132161006 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 740 715 53 3 11 chr5 20376256 20376358 -132160901 - B1_Mm SINE Alu -13 107 12 5 740 800 279 126 9 chr5 20376403 20376955 -132160304 + L1MA4 LINE L1 4456 5072 -1071 5 740 229 305 39 19 chr5 20377053 20377207 -132160052 + L1MEc LINE L1 1713 1869 -4531 5 740 651 167 70 28 chr5 20377286 20377428 -132159831 - B1_Mur4 SINE Alu 0 150 3 5 740 442 244 0 0 chr5 20377597 20377687 -132159572 + PB1D9 SINE Alu 25 114 -6 5 740 552 256 64 21 chr5 20377825 20377965 -132159294 + B4A SINE B4 147 292 0 5 740 330 279 73 26 chr5 20378021 20378253 -132159006 + L1MEc LINE L1 2460 2702 -3617 5 740 287 333 55 9 chr5 20378408 20378517 -132158742 + PB1D7 SINE Alu 7 120 0 5 740 487 308 27 0 chr5 20378591 20378737 -132158522 + RSINE1 SINE B4 2 151 -14 5 740 985 277 73 40 chr5 20378902 20379460 -132157799 + L1MA4 LINE L1 5343 5931 -369 5 740 539 158 166 9 chr5 20379594 20379719 -132157540 - B1_Mus2 SINE Alu -20 127 1 5 740 262 286 18 152 chr5 20379625 20379742 -132157517 - MT2B LTR ERVL -353 248 154 5 740 383 58 19 0 chr5 20379742 20379794 -132157465 - MTB LTR MaLR 0 400 348 5 740 6629 56 22 0 chr5 20379794 20380675 -132156584 + L1_Mus1 LINE L1 5668 6567 0 5 740 2668 78 0 6 chr5 20380679 20381039 -132156220 - MTB LTR MaLR -42 358 1 5 740 902 230 77 17 chr5 20381043 20381277 -132155982 + ORR1D1 LTR MaLR 98 345 -29 5 740 555 134 0 0 chr5 20381263 20381345 -132155914 + ORR1D1-int LTR MaLR 1428 1509 0 5 740 995 169 277 43 chr5 20381345 20381648 -132155611 + ORR1D1 LTR MaLR 1 374 0 5 740 353 294 121 29 chr5 20381662 20381802 -132155457 + RSINE1 SINE B4 13 165 0 5 740 643 261 141 46 chr5 20381873 20382153 -132155106 + B4A SINE B4 9 292 0 5 740 788 195 0 39 chr5 20382444 20382599 -132154660 - B1_Mur2 SINE Alu 0 149 1 5 740 461 257 34 57 chr5 20383019 20383196 -132154063 - CR1_Mam LINE CR1 -1968 236 64 5 740 361 236 95 73 chr5 20383480 20383617 -132153642 + ID_B1 SINE B4 82 221 -3 5 740 571 174 130 16 chr5 20383499 20383622 -132153637 + B1F2 SINE Alu 13 149 0 5 740 1182 27 0 26 chr5 20383722 20383873 -132153386 + B1_Mm SINE Alu 1 147 0 5 740 1373 213 84 40 chr5 20384107 20384454 -132152805 + ORR1D1 LTR MaLR 1 362 -12 5 740 185 264 97 62 chr5 20384623 20384708 -132152551 + L2c LINE L2 3051 3143 -244 5 740 1201 76 16 32 chr5 20384708 20384898 -132152361 + L1_Mus3 LINE L1 6452 6638 0 5 740 185 264 97 62 chr5 20384898 20384925 -132152334 + L2c LINE L2 3144 3167 -220 5 740 471 113 0 0 chr5 20385123 20385194 -132152065 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 740 662 133 42 6 chr5 20385238 20385355 -132151904 - B3 SINE B2 -63 135 18 5 740 441 125 0 0 chr5 20385375 20385439 -132151820 - B3 SINE B2 -152 64 1 5 740 428 263 25 34 chr5 20385458 20385576 -132151683 - PB1D9 SINE Alu -2 118 2 5 740 1076 79 0 0 chr5 20385700 20385839 -132151420 + B1_Mus1 SINE Alu 3 141 -7 5 740 237 33 0 0 chr5 20385841 20385871 -132151388 + (A)n Simple_repeat Simple_repeat 1 30 0 5 740 21 0 0 0 chr5 20386206 20386227 -132151032 + AT_rich Low_complexity Low_complexity 1 21 0 5 740 22 35 0 0 chr5 20387460 20387489 -132149770 + GC_rich Low_complexity Low_complexity 1 29 0 5 740 26 101 0 0 chr5 20387533 20387622 -132149637 + GC_rich Low_complexity Low_complexity 1 89 0 5 740 21 0 0 0 chr5 20387864 20387885 -132149374 + GC_rich Low_complexity Low_complexity 1 21 0 5 740 397 195 57 74 chr5 20389660 20389782 -132147477 + B1_Mur1 SINE Alu 21 140 -9 5 740 329 276 0 45 chr5 20390109 20390219 -132147040 + RSINE1 SINE B4 21 125 -40 5 740 542 252 17 8 chr5 20390616 20390736 -132146523 + B3A SINE B2 6 126 -72 5 740 840 148 59 0 chr5 20391122 20391257 -132146002 + B1_Mus1 SINE Alu 3 145 -3 5 740 1259 55 7 0 chr5 20391537 20391682 -132145577 + B1_Mus1 SINE Alu 3 148 0 5 740 362 291 44 50 chr5 20391697 20391856 -132145403 + B3A SINE B2 38 195 -3 5 740 2282 46 0 0 chr5 20393128 20393391 -132143868 - L1Md_A LINE L1 0 6582 6320 5 740 417 268 75 27 chr5 20393418 20393564 -132143695 - B3 SINE B2 -46 170 18 5 740 421 296 92 51 chr5 20393599 20393795 -132143464 - B3A SINE B2 -4 212 9 6 740 270 221 198 0 chr5 20393892 20393978 -132143281 + PB1D10 SINE Alu 2 104 -13 6 740 485 226 13 5 chr5 20394033 20394141 -132143118 - B4A SINE B4 -8 284 178 6 740 1189 65 0 0 chr5 20394352 20394491 -132142768 - B1_Mus2 SINE Alu -7 140 2 6 740 781 114 55 31 chr5 20396092 20396219 -132141040 + B1_Mus1 SINE Alu 1 130 -18 6 740 509 192 75 67 chr5 20396227 20396361 -132140898 + B1F2 SINE Alu 5 139 -10 6 740 245 257 40 0 chr5 20397032 20397106 -132140153 + MER2 DNA MER2_type 158 234 -111 6 740 497 184 0 84 chr5 20398173 20398280 -132138979 + B3 SINE B2 2 99 -117 6 740 949 203 30 5 chr5 20398268 20398466 -132138793 + URR1B DNA MER1_type 23 225 0 6 740 405 234 43 0 chr5 20398466 20398559 -132138700 + B3 SINE B2 109 205 -11 6 740 204 217 0 0 chr5 20401197 20401243 -132136016 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 740 1563 70 5 0 chr5 20402866 20403053 -132134206 + B2_Mm1t SINE B2 2 189 -4 6 740 663 261 93 63 chr5 20403252 20403649 -132133610 + L1MA6 LINE L1 5869 6277 -23 6 740 1013 243 131 14 chr5 20404132 20404662 -132132597 + Lx9 LINE L1 7007 7637 -7 6 740 303 231 38 91 chr5 20404825 20404981 -132132278 + MTEb LTR MaLR 218 377 -2 6 740 1115 43 0 7 chr5 20405448 20405587 -132131672 - B1_Mus1 SINE Alu 0 148 11 6 740 243 88 0 0 chr5 20405830 20405864 -132131395 + (A)n Simple_repeat Simple_repeat 1 34 0 6 740 978 135 6 11 chr5 20405864 20406044 -132131215 + GA-rich Low_complexity Low_complexity 2 180 0 6 740 493 278 0 9 chr5 20406056 20406157 -132131102 + B1_Mur1 SINE Alu 2 101 -48 6 740 734 262 7 0 chr5 20406157 20406298 -132130961 + B3A SINE B2 1 142 -56 6 740 535 171 69 43 chr5 20406348 20406464 -132130795 + B1_Mur3 SINE Alu 24 142 -7 6 740 261 0 0 0 chr5 20406473 20406502 -132130757 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 740 1243 104 28 0 chr5 20406515 20406697 -132130562 + B2_Mm2 SINE B2 9 195 0 6 740 208 179 0 49 chr5 20406701 20406742 -132130517 + polypurine Low_complexity Low_complexity 2 40 0 6 740 436 309 58 22 chr5 20407252 20407391 -132129868 + B4A SINE B4 1 144 -148 6 740 743 209 0 92 chr5 20407611 20407774 -132129485 + B1_Mur1 SINE Alu 2 149 0 6 740 756 222 119 0 chr5 20407886 20408071 -132129188 + B3 SINE B2 1 207 -9 6 740 23 0 0 0 chr5 20408644 20408667 -132128592 + AT_rich Low_complexity Low_complexity 1 23 0 6 740 733 144 0 0 chr5 20409386 20409504 -132127755 + B1_Mur4 SINE Alu 1 118 -32 6 740 454 245 209 25 chr5 20409514 20409677 -132127582 + B3A SINE B2 2 194 -4 6 740 909 195 103 0 chr5 20409906 20410101 -132127158 - B3 SINE B2 0 216 2 6 740 306 218 13 13 chr5 20410252 20410331 -132126928 - RMER1C Other Other -4 1338 1260 6 740 1884 259 95 9 chr5 20410274 20410843 -132126416 - Lx8 LINE L1 -5 7468 6851 6 740 325 302 26 39 chr5 20410852 20410992 -132126267 - B1F SINE Alu -5 145 7 6 740 318 291 13 0 chr5 20411087 20411166 -132126093 + ID_B1 SINE B4 78 157 -67 6 740 456 321 0 0 chr5 20411097 20411206 -132126053 + PB1D10 SINE Alu 8 116 -1 6 740 22 56 0 0 chr5 20411744 20411780 -132125479 + AT_rich Low_complexity Low_complexity 1 36 0 6 740 237 167 0 77 chr5 20411807 20411872 -132125387 + Lx9 LINE L1 7584 7643 -1 6 740 1683 42 0 20 chr5 20412268 20412464 -132124795 + B2_Mm1t SINE B2 2 193 0 6 740 818 111 93 36 chr5 20412547 20412687 -132124572 - B1_Mur3 SINE Alu 0 149 2 6 740 213 329 14 14 chr5 20413250 20413324 -132123935 + RSINE1 SINE B4 85 158 -7 6 740 796 194 20 40 chr5 20413678 20413828 -132123431 + B1_Mur3 SINE Alu 2 148 -1 6 740 267 167 60 0 chr5 20414201 20414285 -132122974 + (TA)n Simple_repeat Simple_repeat 2 90 0 6 740 180 0 0 0 chr5 20414405 20414425 -132122834 + (CAAAAA)n Simple_repeat Simple_repeat 1 20 0 6 740 792 174 260 17 chr5 20415494 20415675 -132121584 + URR1A DNA MER1_type 1 225 -1 6 740 839 210 28 0 chr5 20416725 20416868 -132120391 + B1_Mur2 SINE Alu 2 148 -1 6 740 1345 93 12 0 chr5 20418052 20418224 -132119035 - B2_Mm2 SINE B2 -19 176 3 6 740 2080 116 54 13 chr5 20419286 20419601 -132117658 + ORR1A4 LTR MaLR 1 328 -1 6 740 652 243 95 21 chr5 20419796 20419985 -132117274 - B4A SINE B4 -87 205 3 6 740 897 154 35 69 chr5 20420117 20420291 -132116968 - B2_Mm2 SINE B2 -27 168 1 6 740 261 296 127 23 chr5 20420309 20420482 -132116777 - L1MA6 LINE L1 -245 6055 5865 6 740 386 304 89 62 chr5 20420534 20420793 -132116466 - L1MA6 LINE L1 -563 5728 5463 6 740 242 245 0 0 chr5 20420937 20420986 -132116273 - RSINE1 SINE B4 -116 49 1 6 740 249 177 97 0 chr5 20420988 20421050 -132116209 - L1MA6 LINE L1 -833 5467 5400 6 740 424 266 11 11 chr5 20421219 20421314 -132115945 - PB1D10 SINE Alu -6 111 17 6 740 1382 40 16 49 chr5 20421318 20421503 -132115756 - B2_Mm2 SINE B2 -15 180 2 6 740 646 246 112 31 chr5 20421531 20421994 -132115265 + L1ME3B LINE L1 4983 5487 -677 6 740 378 263 131 35 chr5 20422042 20422422 -132114837 + L1ME3B LINE L1 5567 5982 -191 6 740 719 218 28 0 chr5 20422443 20422585 -132114674 + B3 SINE B2 2 147 -69 6 740 202 95 0 45 chr5 20422590 20422634 -132114625 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 740 429 98 324 0 chr5 20423132 20423240 -132114019 + B2_Mm2 SINE B2 47 193 -2 6 740 608 215 6 102 chr5 20423898 20424064 -132113195 + B3 SINE B2 2 151 -65 6 740 1321 191 94 56 chr5 20424160 20424520 -132112739 + ORR1D1 LTR MaLR 1 374 0 6 740 728 192 0 8 chr5 20424707 20424828 -132112431 - PB1D9 SINE Alu 0 120 1 6 740 574 196 142 5 chr5 20424982 20425157 -132112102 + B3 SINE B2 1 197 -1 6 740 204 283 0 0 chr5 20425883 20425936 -132111323 + CT-rich Low_complexity Low_complexity 3 55 0 6 740 430 182 256 6 chr5 20427061 20427215 -132110044 - B3 SINE B2 -23 193 1 6 740 327 330 0 57 chr5 20427232 20427338 -132109921 - PB1D7 SINE Alu -20 100 1 6 740 552 324 64 0 chr5 20427428 20427601 -132109658 - ID_B1 SINE B4 -40 184 1 6 740 352 324 42 108 chr5 20427812 20427926 -132109333 - RSINE1 SINE B4 -10 155 50 6 740 481 212 58 58 chr5 20427926 20428046 -132109213 + PB1D9 SINE Alu 1 120 0 6 740 352 324 42 108 chr5 20428046 20428097 -132109162 - RSINE1 SINE B4 -116 49 1 6 740 1078 108 183 0 chr5 20428231 20428417 -132108842 + URR1A DNA MER1_type 2 221 -5 6 740 1202 43 14 0 chr5 20428510 20428648 -132108611 + B1_Mus1 SINE Alu 2 141 -7 6 740 429 20 0 0 chr5 20428649 20428699 -132108560 + (CAAAA)n Simple_repeat Simple_repeat 4 53 0 6 740 306 229 16 16 chr5 20428761 20428823 -132108436 + ID_B1 SINE B4 110 171 -53 6 740 283 291 70 0 chr5 20428823 20428847 -132108412 + PB1D9 SINE Alu 29 120 0 6 740 2990 151 33 56 chr5 20428949 20429489 -132107770 + RLTR11A LTR ERVK 1 528 0 6 740 276 234 0 30 chr5 20429766 20429832 -132107427 - B1F SINE Alu -6 143 80 6 740 297 0 0 0 chr5 20429885 20429918 -132107341 + (TC)n Simple_repeat Simple_repeat 1 33 0 6 740 219 36 0 0 chr5 20429918 20429945 -132107314 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 740 1496 70 11 0 chr5 20429962 20430147 -132107112 - B2_Mm1t SINE B2 -5 188 2 6 740 768 255 56 15 chr5 20430184 20430379 -132106880 - B3 SINE B2 -13 203 1 6 740 1215 122 55 0 chr5 20430984 20431165 -132106094 - B2_Mm1a SINE B2 -2 191 1 6 740 999 0 0 0 chr5 20431522 20431633 -132105626 + (CCTG)n Simple_repeat Simple_repeat 2 112 0 6 740 700 281 0 0 chr5 20431746 20431910 -132105349 + B3 SINE B2 47 210 -6 6 740 647 214 27 33 chr5 20431954 20432104 -132105155 + B1_Mur1 SINE Alu 1 149 0 6 740 32 0 0 0 chr5 20432116 20432148 -132105111 + AT_rich Low_complexity Low_complexity 1 32 0 6 740 683 270 50 11 chr5 20432273 20432453 -132104806 + B3A SINE B2 6 192 -6 6 740 207 306 0 12 chr5 20433464 20433550 -132103709 + CT-rich Low_complexity Low_complexity 4 88 0 6 740 589 248 7 27 chr5 20433640 20433789 -132103470 + B1_Mur2 SINE Alu 2 147 -2 6 740 1432 81 38 5 chr5 20433943 20434129 -132103130 - B2_Mm2 SINE B2 -3 192 1 6 740 940 156 13 33 chr5 20434443 20434595 -132102664 + B1_Mur4 SINE Alu 1 149 -1 6 740 1431 105 16 0 chr5 20434607 20434798 -132102461 + B2_Mm2 SINE B2 2 195 0 6 740 216 0 0 0 chr5 20434818 20434842 -132102417 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 740 482 226 125 0 chr5 20435171 20435339 -132101920 - MER33 DNA MER1_type -9 315 127 6 740 530 313 7 26 chr5 20435417 20435568 -132101691 - RSINE1 SINE B4 -17 148 1 6 740 818 191 14 28 chr5 20435884 20436029 -132101230 + B1_Mur2 SINE Alu 1 143 -6 6 740 996 259 181 27 chr5 20436135 20437144 -132100115 + L1MC1 LINE L1 4700 5941 -2101 6 740 325 269 0 25 chr5 20437144 20437224 -132100035 + B4A SINE B4 147 224 -68 6 740 216 0 0 0 chr5 20437579 20437603 -132099656 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 6 740 197 163 20 0 chr5 20437669 20437718 -132099541 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 740 878 159 20 27 chr5 20437900 20438049 -132099210 + B1_Mur3 SINE Alu 2 149 0 6 740 1242 47 0 7 chr5 20438211 20438360 -132098899 + B1_Mus1 SINE Alu 1 148 0 6 740 592 250 21 28 chr5 20438483 20438561 -132098698 + ID SINE ID 1 77 -147 6 740 266 293 13 51 chr5 20438561 20438640 -132098619 + PB1 SINE Alu 1 76 -51 7 740 711 244 155 6 chr5 20438691 20438872 -132098387 + B3 SINE B2 4 211 -5 7 740 1126 115 0 0 chr5 20438943 20439091 -132098168 + B1_Mus1 SINE Alu 1 148 0 7 740 1468 85 5 5 chr5 20439423 20439612 -132097647 + B2_Mm1t SINE B2 1 189 -4 7 740 1170 44 0 0 chr5 20440935 20441070 -132096189 + B1_Mus1 SINE Alu 2 136 -12 7 740 220 27 26 26 chr5 20441070 20441108 -132096151 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 7 740 601 220 67 54 chr5 20441254 20441647 -132095612 - RMER10A LTR ERVL 0 442 7 7 740 402 109 15 30 chr5 20441638 20441704 -132095555 + B1_Mus2 SINE Alu 67 131 -16 7 740 493 301 40 30 chr5 20441938 20442137 -132095122 + B3 SINE B2 1 201 -15 7 740 1317 199 169 20 chr5 20442143 20442491 -132094768 + MTD LTR MaLR 12 411 -8 7 740 349 398 50 0 chr5 20442618 20442799 -132094460 + MIRb SINE MIR 3 192 -76 7 740 729 129 14 57 chr5 20442892 20443032 -132094227 - B1_Mur3 SINE Alu -2 147 14 7 740 252 0 0 0 chr5 20443117 20443145 -132094114 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 7 740 362 194 15 0 chr5 20443151 20443218 -132094041 - B3 SINE B2 -76 140 73 7 740 249 108 0 0 chr5 20443218 20443255 -132094004 - B2_Mm2 SINE B2 -158 37 1 7 740 1618 62 0 0 chr5 20443379 20443571 -132093688 - B2_Mm1a SINE B2 0 193 2 7 740 254 247 50 40 chr5 20443746 20443847 -132093412 + RSINE1 SINE B4 3 104 -61 7 740 348 24 0 0 chr5 20443872 20443913 -132093346 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 740 238 148 37 0 chr5 20443913 20443967 -132093292 + (TA)n Simple_repeat Simple_repeat 1 56 0 7 740 554 218 118 15 chr5 20443981 20444116 -132093143 + B1_Mur1 SINE Alu 1 149 0 7 740 1219 47 0 13 chr5 20444159 20444309 -132092950 + B1_Mus1 SINE Alu 1 148 0 7 740 192 135 0 0 chr5 20444309 20444346 -132092913 + (A)n Simple_repeat Simple_repeat 1 37 0 7 740 205 118 0 56 chr5 20444749 20444785 -132092474 + G-rich Low_complexity Low_complexity 1 34 0 7 740 216 264 43 11 chr5 20444785 20444877 -132092382 + (CAGA)n Simple_repeat Simple_repeat 2 96 0 7 740 246 130 43 0 chr5 20445122 20445168 -132092091 - ID_B1 SINE B4 -3 221 174 7 740 726 204 13 33 chr5 20445618 20445770 -132091489 + B1_Mur2 SINE Alu 1 149 0 7 740 596 158 20 0 chr5 20445770 20445871 -132091388 - PB1D9 SINE Alu -13 107 5 7 740 366 280 96 0 chr5 20446146 20446271 -132090988 + B3A SINE B2 16 152 -46 7 92 1279 209 105 13 chr5 20447125 20447430 -132089829 + ORR1D2 LTR MaLR 38 370 0 7 741 360 257 74 60 chr5 20447430 20447572 -132089687 + RSINE1 SINE B4 22 165 0 7 741 777 251 37 0 chr5 20447684 20447871 -132089388 - B3A SINE B2 -4 194 1 7 741 665 160 6 127 chr5 20448447 20448612 -132088647 - B1_Mus2 SINE Alu 0 147 3 7 741 377 299 101 13 chr5 20449143 20449292 -132087967 + RSINE1 SINE B4 1 162 -3 7 741 1201 68 0 0 chr5 20449571 20449718 -132087541 + B1_Mus2 SINE Alu 1 147 0 7 741 216 0 0 0 chr5 20449718 20449742 -132087517 + (A)n Simple_repeat Simple_repeat 1 24 0 7 741 731 176 139 22 chr5 20449751 20449931 -132087328 + B3 SINE B2 16 216 0 7 741 1474 49 5 0 chr5 20450148 20450333 -132086926 + L1Md_T LINE L1 6397 6582 0 7 741 225 267 16 32 chr5 20450787 20450849 -132086410 - ID4 SINE ID -5 78 18 7 741 385 257 64 43 chr5 20451279 20451458 -132085801 + MLT1B LTR MaLR 190 374 0 7 741 422 309 68 22 chr5 20451554 20451776 -132085483 + HAL1 LINE L1 764 995 -1512 7 741 1347 89 11 5 chr5 20451778 20451969 -132085290 + B2_Mm1t SINE B2 1 192 -1 7 741 1174 55 7 0 chr5 20452268 20452414 -132084845 + B1_Mus2 SINE Alu 1 147 0 7 741 198 91 0 0 chr5 20452422 20452455 -132084804 + (A)n Simple_repeat Simple_repeat 1 33 0 7 741 328 189 124 36 chr5 20452520 20452657 -132084602 + HAL1 LINE L1 1743 1891 -616 7 741 601 281 76 27 chr5 20452767 20453030 -132084229 + B4A SINE B4 15 290 -2 7 741 1422 64 16 21 chr5 20453157 20453348 -132083911 - B2_Mm2 SINE B2 -5 190 1 7 741 278 286 44 18 chr5 20453354 20453468 -132083791 - PB1D10 SINE Alu 0 117 1 7 741 493 109 0 132 chr5 20453580 20453686 -132083573 + B1_Mus2 SINE Alu 56 147 0 7 741 311 272 11 32 chr5 20453689 20453784 -132083475 + PB1D10 SINE Alu 1 93 -24 7 741 519 221 62 0 chr5 20454100 20454213 -132083046 + B1F1 SINE Alu 1 120 -29 7 741 1210 48 0 0 chr5 20454275 20454413 -132082846 + B1_Mm SINE Alu 1 138 -9 7 741 234 0 0 0 chr5 20454413 20454439 -132082820 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 741 1407 74 32 0 chr5 20454629 20454818 -132082441 + B2_Mm2 SINE B2 1 195 0 7 741 639 137 94 51 chr5 20455123 20455261 -132081998 + B1_Mm SINE Alu 1 144 -3 7 741 386 315 99 8 chr5 20455375 20455506 -132081753 - RSINE1 SINE B4 -21 144 2 7 741 183 42 0 0 chr5 20456404 20456428 -132080831 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 7 741 202 97 32 0 chr5 20456502 20456533 -132080726 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 7 741 180 0 0 0 chr5 20456730 20456750 -132080509 + (T)n Simple_repeat Simple_repeat 1 20 0 7 741 24 53 0 0 chr5 20457030 20457068 -132080191 + GC_rich Low_complexity Low_complexity 1 38 0 7 741 405 211 105 105 chr5 20458664 20458807 -132078452 - B1_Mm SINE Alu -1 146 4 7 741 264 258 0 0 chr5 20458862 20458924 -132078335 + Lx8 LINE L1 5848 5909 -1564 7 741 1058 86 14 0 chr5 20459218 20459357 -132077902 - B1_Mus1 SINE Alu -7 141 1 7 741 1152 68 0 0 chr5 20459509 20459657 -132077602 + B1_Mus1 SINE Alu 1 148 0 7 741 559 168 0 118 chr5 20459914 20460049 -132077210 + B1_Mus2 SINE Alu 29 147 0 7 741 304 325 105 32 chr5 20460092 20460216 -132077043 + ID_B1 SINE B4 85 217 -7 7 741 674 274 55 10 chr5 20460250 20460449 -132076810 - B3 SINE B2 -7 209 2 7 741 189 0 0 0 chr5 20460464 20460485 -132076774 + (TCCCC)n Simple_repeat Simple_repeat 3 23 0 7 741 642 248 0 46 chr5 20460486 20460638 -132076621 - B3A SINE B2 -52 146 2 7 741 225 0 0 0 chr5 20461577 20461602 -132075657 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 7 741 725 152 32 0 chr5 20461645 20461770 -132075489 - B3 SINE B2 -86 130 2 7 741 613 265 19 25 chr5 20461804 20461963 -132075296 + RSINE1 SINE B4 8 165 0 7 741 222 118 0 0 chr5 20461966 20462000 -132075259 + (TCTCCC)n Simple_repeat Simple_repeat 5 38 0 7 741 797 170 50 0 chr5 20462046 20462187 -132075072 - B1_Mur2 SINE Alu 0 149 2 7 741 369 0 0 0 chr5 20462324 20462365 -132074894 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 741 292 256 2 58 chr5 20462436 20462514 -132074745 + B1F1 SINE Alu 13 87 -33 7 741 654 203 106 30 chr5 20462515 20462713 -132074546 - L1MC LINE L1 -1235 4911 4699 7 741 686 208 20 14 chr5 20462716 20462862 -132074397 - B1_Mur4 SINE Alu -3 147 1 7 741 255 282 23 86 chr5 20462757 20462885 -132074374 - MT2B LTR ERVL -341 260 141 7 741 694 148 71 36 chr5 20462932 20463072 -132074187 + B1_Mur3 SINE Alu 5 149 0 7 741 462 249 173 0 chr5 20463075 20463312 -132073947 - L1MC LINE L1 -1505 4641 4364 7 741 198 26 24 49 chr5 20463335 20463376 -132073883 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 7 741 1138 55 7 0 chr5 20463381 20463526 -132073733 - B1_Mm SINE Alu 0 147 2 7 741 1335 102 16 0 chr5 20463543 20463730 -132073529 + B2_Mm2 SINE B2 1 190 -5 7 741 404 223 62 55 chr5 20463789 20463917 -132073342 - B1F SINE Alu -1 148 20 7 741 588 203 16 25 chr5 20463803 20463924 -132073335 - ID_B1 SINE B4 -11 213 94 7 741 286 207 30 139 chr5 20464113 20464214 -132073045 + PB1D10 SINE Alu 36 125 -2 7 741 211 354 39 16 chr5 20464604 20464733 -132072526 + L2 LINE L2 2742 2873 -546 7 741 3277 36 8 8 chr5 20464773 20465169 -132072090 + MTA_Mm LTR MaLR 1 396 0 7 741 207 0 0 0 chr5 20465272 20465295 -132071964 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 741 21 0 0 0 chr5 20465295 20465316 -132071943 + AT_rich Low_complexity Low_complexity 1 21 0 7 741 1462 82 0 15 chr5 20465474 20465644 -132071615 + B2_Mm2 SINE B2 2 169 -26 7 741 1438 44 49 0 chr5 20465644 20465827 -132071432 - B2_Mm1t SINE B2 0 193 2 7 741 1462 82 0 15 chr5 20465827 20465853 -132071406 + B2_Mm2 SINE B2 170 195 0 7 741 525 115 10 10 chr5 20466525 20466622 -132070637 - L1_Mus3 LINE L1 -3 6635 6539 7 741 2833 96 88 2 chr5 20466645 20467041 -132070218 - RLTR23 LTR ERV1 0 430 1 7 741 1470 156 117 41 chr5 20467041 20467084 -132070175 - ORR1C2 LTR MaLR -7 377 343 7 741 1312 77 55 0 chr5 20467084 20467267 -132069992 - B2_Mm1t SINE B2 0 193 1 7 741 1470 156 117 41 chr5 20467267 20467564 -132069695 - ORR1C2 LTR MaLR -42 342 11 7 741 560 261 67 75 chr5 20467568 20467850 -132069409 + RLTR20B3 LTR ERVK 21 300 -277 7 741 233 268 50 20 chr5 20467848 20467947 -132069312 + B1_Mur1 SINE Alu 22 123 -26 7 741 679 212 136 62 chr5 20468204 20468461 -132068798 - RLTR31A_Mm LTR ERVK 0 584 309 7 741 1126 75 0 0 chr5 20468488 20468634 -132068625 + B1_Mm SINE Alu 2 147 0 7 741 650 146 95 24 chr5 20469532 20469658 -132067601 - B1_Mur4 SINE Alu -2 148 14 7 741 207 0 0 0 chr5 20469715 20469738 -132067521 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 741 964 40 0 0 chr5 20469745 20469870 -132067389 - B1_Mm SINE Alu -21 126 2 8 741 827 58 0 4 chr5 20470778 20470913 -132066346 + B1_Mus2 SINE Alu 3 134 -14 8 741 388 211 84 84 chr5 20470985 20471104 -132066155 - PB1D9 SINE Alu 0 120 2 8 741 309 278 47 8 chr5 20471158 20471285 -132065974 + B1F1 SINE Alu 10 141 -8 8 741 243 241 328 0 chr5 20471306 20471422 -132065837 + RSINE1 SINE B4 2 155 -10 8 741 849 182 309 7 chr5 20471739 20472057 -132065202 + MTD LTR MaLR 1 414 -5 8 741 1405 73 17 0 chr5 20472058 20472236 -132065023 + B2_Mm2 SINE B2 2 182 -13 8 741 180 0 0 0 chr5 20472236 20472256 -132065003 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 741 288 198 161 65 chr5 20472269 20472393 -132064866 + B1F2 SINE Alu 13 148 -1 8 741 1055 193 46 0 chr5 20472598 20472795 -132064464 + B3 SINE B2 1 206 -10 8 741 213 121 0 0 chr5 20472813 20472846 -132064413 + (CAA)n Simple_repeat Simple_repeat 2 34 0 8 741 396 0 0 0 chr5 20472846 20472890 -132064369 + (TAA)n Simple_repeat Simple_repeat 3 46 0 8 741 1172 75 0 7 chr5 20473412 20473560 -132063699 + B1_Mus1 SINE Alu 2 148 0 8 741 705 241 48 92 chr5 20474256 20474356 -132062903 - RMER5 LTR ERV1 -26 508 405 8 741 662 235 106 11 chr5 20474356 20474545 -132062714 - B3 SINE B2 -9 207 1 8 741 705 241 48 92 chr5 20474545 20474736 -132062523 - RMER5 LTR ERV1 -130 404 230 8 741 464 188 112 45 chr5 20474747 20474881 -132062378 - RMER5 LTR ERV1 -360 174 32 8 741 825 116 22 0 chr5 20475265 20475403 -132061856 + B1_Mur4 SINE Alu 9 149 -1 8 741 386 16 66 0 chr5 20475559 20475620 -132061639 + B2_Mm1t SINE B2 129 193 0 8 741 1173 61 0 20 chr5 20475707 20475857 -132061402 + B1_Mus2 SINE Alu 1 147 0 8 741 414 0 0 0 chr5 20475904 20475950 -132061309 + (TTC)n Simple_repeat Simple_repeat 1 46 0 8 741 454 243 9 18 chr5 20475957 20476070 -132061189 - B1_Mus1 SINE Alu 0 148 37 8 741 276 302 138 32 chr5 20476398 20476521 -132060738 + RSINE1 SINE B4 13 148 -17 8 741 420 71 0 0 chr5 20476529 20476585 -132060674 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 741 975 165 0 1 chr5 20476702 20477365 -132059894 + (TCCA)n Simple_repeat Simple_repeat 1 662 0 8 741 218 264 92 0 chr5 20477734 20477821 -132059438 + RSINE1 SINE B4 71 165 0 8 741 873 76 0 0 chr5 20477833 20477951 -132059308 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 8 741 1132 159 73 15 chr5 20478203 20478407 -132058852 - B3 SINE B2 0 216 1 8 741 414 0 0 0 chr5 20478432 20478478 -132058781 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 741 261 0 0 0 chr5 20478478 20478506 -132058753 + (GA)n Simple_repeat Simple_repeat 1 29 0 8 741 486 183 93 25 chr5 20478526 20478644 -132058615 - B3A SINE B2 -71 127 2 8 741 276 241 125 72 chr5 20479744 20479896 -132057363 - RLTR9A LTR ERVK -6 397 236 8 741 331 165 22 76 chr5 20479946 20480038 -132057221 - RLTR9A LTR ERVK -281 87 1 8 741 525 204 99 70 chr5 20480038 20480180 -132057079 - B3 SINE B2 -70 146 1 8 741 795 46 0 0 chr5 20480199 20480307 -132056952 - B1_Mm SINE Alu 0 147 40 8 741 254 83 0 186 chr5 20480257 20480316 -132056943 - 4.5SRNA scRNA scRNA -8 86 39 8 741 786 184 21 0 chr5 20480325 20480466 -132056793 - B1_Mur4 SINE Alu -6 144 1 8 741 318 26 0 0 chr5 20480548 20480587 -132056672 + (GGGTG)n Simple_repeat Simple_repeat 3 41 0 8 741 556 215 15 15 chr5 20480701 20480833 -132056426 + ID_B1 SINE B4 93 224 0 8 741 1210 171 5 5 chr5 20480835 20481041 -132056218 + B3 SINE B2 2 207 -9 8 741 645 278 123 0 chr5 20481237 20481489 -132055770 - B4A SINE B4 -9 283 1 8 741 476 197 25 33 chr5 20481668 20481789 -132055470 - PB1D9 SINE Alu 0 120 1 8 741 258 160 0 0 chr5 20482038 20482088 -132055171 + T-rich Low_complexity Low_complexity 1 50 0 8 741 1201 34 0 26 chr5 20482088 20482239 -132055020 - B1_Mm SINE Alu 0 147 1 8 741 1608 47 0 0 chr5 20482354 20482546 -132054713 + B2_Mm1a SINE B2 2 193 0 8 741 1266 34 0 0 chr5 20483028 20483175 -132054084 + B1_Mm SINE Alu 1 147 0 8 741 339 25 0 0 chr5 20483175 20483215 -132054044 + (A)n Simple_repeat Simple_repeat 1 40 0 8 741 203 309 0 0 chr5 20483448 20483503 -132053756 + CT-rich Low_complexity Low_complexity 4 58 0 8 741 407 43 57 0 chr5 20483521 20483591 -132053668 + (TG)n Simple_repeat Simple_repeat 2 75 0 8 741 583 117 97 0 chr5 20483593 20483696 -132053563 - B1_Mur4 SINE Alu -6 144 32 8 741 1248 41 0 0 chr5 20483733 20483880 -132053379 + B1_Mus1 SINE Alu 2 148 0 8 741 25 0 0 0 chr5 20483880 20483905 -132053354 + AT_rich Low_complexity Low_complexity 1 25 0 8 741 1578 32 0 0 chr5 20484296 20485336 -132051923 + (CA)n Simple_repeat Simple_repeat 1 1040 0 8 741 752 206 210 50 chr5 20485393 20485750 -132051509 + L1M2 LINE L1 4396 4809 -1334 8 741 1416 196 64 19 chr5 20485884 20486196 -132051063 - MTD LTR MaLR -81 338 13 8 741 211 125 41 20 chr5 20486198 20486247 -132051012 + (CAAAC)n Simple_repeat Simple_repeat 2 51 0 8 741 474 195 194 6 chr5 20486259 20486419 -132050840 + L1M2 LINE L1 4865 5054 -1089 8 741 601 271 138 76 chr5 20486403 20486651 -132050608 + L1M2 LINE L1 5262 5522 -778 8 741 1729 177 27 85 chr5 20486651 20487000 -132050259 + ORR1C1 LTR MaLR 1 335 -43 8 741 1265 106 26 0 chr5 20487000 20487189 -132050070 + B2_Mm2 SINE B2 2 195 0 8 741 1729 177 27 85 chr5 20487189 20487240 -132050019 + ORR1C1 LTR MaLR 336 378 0 8 741 601 271 138 76 chr5 20487240 20487475 -132049784 + L1M2 LINE L1 5523 5775 -525 8 741 1043 200 24 19 chr5 20487744 20487953 -132049306 + B3 SINE B2 1 210 -6 8 741 195 42 0 0 chr5 20488006 20488030 -132049229 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 8 741 1044 99 0 0 chr5 20488032 20488173 -132049086 - B1_Mus2 SINE Alu -6 141 1 8 741 311 258 29 58 chr5 20488547 20488650 -132048609 - PB1D10 SINE Alu 0 117 18 8 741 595 218 65 0 chr5 20488729 20488853 -132048406 - B1_Mur3 SINE Alu -13 136 5 8 741 774 239 53 14 chr5 20488972 20489180 -132048079 - B3 SINE B2 0 216 1 8 741 22 0 0 0 chr5 20489189 20489211 -132048048 + AT_rich Low_complexity Low_complexity 1 22 0 8 741 756 178 227 11 chr5 20489211 20489387 -132047872 - B3 SINE B2 0 216 3 8 741 1283 229 221 22 chr5 20489457 20489873 -132047386 + RLTR19 LTR ERVK 1 499 0 8 741 815 181 80 27 chr5 20489914 20490101 -132047158 - B3 SINE B2 -6 210 14 8 741 535 287 49 0 chr5 20490162 20490326 -132046933 + ID_B1 SINE B4 7 178 -46 8 741 363 67 108 96 chr5 20490317 20490354 -132046905 + ORR1C2 LTR MaLR 298 341 -43 8 741 1359 79 10 64 chr5 20490354 20490392 -132046867 + B2_Mm1a SINE B2 2 35 -158 8 741 1343 88 5 30 chr5 20490392 20490592 -132046667 + B2_Mm2 SINE B2 1 195 0 8 741 1359 79 10 64 chr5 20490592 20490755 -132046504 + B2_Mm1a SINE B2 36 192 -1 8 741 363 67 108 96 chr5 20490755 20490800 -132046459 + ORR1C2 LTR MaLR 342 381 -3 8 741 1059 15 114 0 chr5 20491061 20491193 -132046066 - B1_Mus2 SINE Alu 0 147 1 8 741 1984 85 51 0 chr5 20491193 20491487 -132045772 - Lx2A LINE L1 -1 7007 6699 8 741 436 238 8 60 chr5 20491585 20491719 -132045540 + ID_B1 SINE B4 98 224 0 8 741 1027 22 0 7 chr5 20491809 20491944 -132045315 - B1_Mm SINE Alu 0 147 14 8 741 229 246 14 0 chr5 20493395 20493464 -132043795 + L1_Mur2 LINE L1 109 178 -7550 8 741 2644 199 72 120 chr5 20493465 20493902 -132043357 + L1_Mur2 LINE L1 1019 1601 -4279 8 741 334 167 24 14 chr5 20493902 20493994 -132043265 + B1_Mur4 SINE Alu 18 139 -11 8 741 2644 199 72 120 chr5 20493994 20494414 -132042845 + L1_Mur2 LINE L1 1602 2165 -3715 8 741 1112 56 42 0 chr5 20494414 20494556 -132042703 + B1_Mus1 SINE Alu 1 148 0 8 741 2644 188 68 146 chr5 20494556 20494765 -132042494 + L1_Mur2 LINE L1 2166 2371 -3509 8 741 275 96 19 0 chr5 20495080 20495132 -132042127 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 741 409 240 52 0 chr5 20495530 20495626 -132041633 - B1F2 SINE Alu -47 102 2 8 741 404 250 38 19 chr5 20495782 20495888 -132041371 - PB1D10 SINE Alu -5 112 5 8 741 619 234 28 0 chr5 20495938 20496079 -132041180 - RSINE1 SINE B4 -17 148 4 8 741 246 258 226 0 chr5 20496590 20496714 -132040545 - ID_B1 SINE B4 -66 158 7 8 741 608 272 7 7 chr5 20497360 20497497 -132039762 - ID_B1 SINE B4 -7 217 81 8 741 675 67 0 0 chr5 20497587 20497676 -132039583 + (TG)n Simple_repeat Simple_repeat 2 90 0 8 741 226 257 84 14 chr5 20497683 20497754 -132039505 - B4A SINE B4 -28 264 189 8 741 292 290 80 51 chr5 20498249 20498387 -132038872 + ID_B1 SINE B4 76 217 -7 8 741 180 0 0 0 chr5 20498389 20498409 -132038850 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 8 741 977 39 0 8 chr5 20499208 20499339 -132037920 + B1_Mus2 SINE Alu 18 147 0 8 741 1806 155 78 9 chr5 20500004 20500337 -132036922 + RMER13A LTR ERVK 76 431 -429 1 741 512 226 105 22 chr5 20500327 20500465 -132036794 + RMER13A LTR ERVK 563 759 -149 1 741 247 250 132 0 chr5 20500491 20500559 -132036700 + RMER13A LTR ERVK 671 747 -113 2 741 22 35 0 0 chr5 20501738 20501767 -132035492 + AT_rich Low_complexity Low_complexity 1 29 0 3 741 1177 91 40 11 chr5 20501798 20501975 -132035284 - B2_Mm2 SINE B2 -13 182 1 4 741 802 196 199 11 chr5 20502133 20502314 -132034945 - B3 SINE B2 0 216 2 5 741 271 255 82 0 chr5 20502466 20502564 -132034695 + PB1D10 SINE Alu 4 109 -8 6 741 398 209 256 6 chr5 20502997 20503161 -132034098 + Lx6 LINE L1 7230 7434 -26 7 741 863 149 0 20 chr5 20503304 20503455 -132033804 + B1_Mur3 SINE Alu 2 149 0 8 741 213 262 58 58 chr5 20505008 20505077 -132032182 - RSINE1 SINE B4 -93 72 4 9 741 719 71 10 0 chr5 20505374 20505472 -132031787 - B1_Mus2 SINE Alu -5 142 44 1 741 1520 48 21 0 chr5 20505476 20505664 -132031595 - B2_Mm2 SINE B2 -1 194 3 1 741 26 40 0 20 chr5 20505664 20505679 -132031580 + AT_rich Low_complexity Low_complexity 1 15 0 1 741 1350 58 52 0 chr5 20505679 20505851 -132031408 - B2_Mm2 SINE B2 -14 181 1 1 741 26 40 0 20 chr5 20505851 20505886 -132031373 + AT_rich Low_complexity Low_complexity 1 35 0 1 741 615 241 132 0 chr5 20505991 20506165 -132031094 + B3 SINE B2 1 197 -19 1 741 1451 49 27 0 chr5 20507412 20507595 -132029664 - B2_Mm1t SINE B2 -5 188 1 1 741 308 154 122 49 chr5 20507631 20507713 -132029546 + PB1D10 SINE Alu 28 115 -2 1 741 789 163 29 7 chr5 20507989 20508125 -132029134 + B1_Mus1 SINE Alu 1 139 -9 1 741 312 328 24 16 chr5 20508758 20508882 -132028377 + B4A SINE B4 1 125 -167 1 741 25 0 0 0 chr5 20509402 20509427 -132027832 + AT_rich Low_complexity Low_complexity 1 25 0 2 741 1172 75 0 0 chr5 20509427 20509574 -132027685 - B1_Mus2 SINE Alu 0 147 1 2 741 695 164 62 0 chr5 20509804 20509932 -132027327 + B1_Mur4 SINE Alu 2 137 -13 2 741 553 274 83 31 chr5 20509958 20510150 -132027109 - B3 SINE B2 -13 203 2 2 741 516 240 14 79 chr5 20510184 20510324 -132026935 + B1F2 SINE Alu 4 134 -15 2 741 235 376 12 0 chr5 20510853 20510938 -132026321 - MIR SINE MIR -168 94 9 2 741 229 320 20 10 chr5 20511772 20511870 -132025389 + PB1D10 SINE Alu 1 99 -18 2 741 735 141 0 66 chr5 20511988 20512125 -132025134 - B1_Mus1 SINE Alu -15 133 6 2 741 671 71 239 0 chr5 20512485 20512598 -132024661 - B2_Mm2 SINE B2 0 195 56 2 741 345 256 51 0 chr5 20512592 20512670 -132024589 - B1F SINE Alu -61 88 7 2 741 273 309 15 0 chr5 20512610 20512678 -132024581 - ID_B1 SINE B4 -76 148 80 3 741 588 235 64 42 chr5 20513044 20513333 -132023926 + ORR1E LTR MaLR 5 370 0 3 741 246 198 256 0 chr5 20513454 20513540 -132023719 - B1F SINE Alu -1 148 12 3 741 365 246 130 116 chr5 20514334 20514472 -132022787 + ID_B1 SINE B4 85 224 0 3 741 1312 100 16 0 chr5 20515424 20515614 -132021645 + B2_Mm2 SINE B2 1 193 -2 3 741 238 331 131 40 chr5 20515773 20515949 -132021310 - B3A SINE B2 -6 192 1 3 741 1935 182 27 15 chr5 20516305 20516707 -132020552 + MTB_Mm LTR MaLR 1 407 0 3 741 21 57 0 0 chr5 20516849 20516884 -132020375 + AT_rich Low_complexity Low_complexity 1 35 0 3 741 1176 146 10 0 chr5 20516884 20517076 -132020183 - B2_Mm2 SINE B2 0 195 2 3 741 304 253 86 14 chr5 20517078 20517155 -132020104 - ID4 SINE ID -63 89 8 3 741 817 140 28 49 chr5 20517588 20517731 -132019528 + B1_Mur3 SINE Alu 1 140 -9 4 741 222 37 0 0 chr5 20517731 20517758 -132019501 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 741 232 250 31 125 chr5 20517882 20517978 -132019281 - BC1_Mm scRNA scRNA -59 93 7 4 741 889 139 183 0 chr5 20518521 20518701 -132018558 - URR1B DNA MER1_type -12 213 1 4 741 1587 43 0 0 chr5 20519049 20519237 -132018022 + B2_Mm1t SINE B2 1 188 -5 4 741 1039 44 74 0 chr5 20519246 20519381 -132017878 + B1_Mus2 SINE Alu 2 146 -1 4 741 2086 240 170 16 chr5 20519656 20520469 -132016790 + Lx8 LINE L1 6534 7471 -2 4 741 21 0 0 0 chr5 20520469 20520490 -132016769 + AT_rich Low_complexity Low_complexity 1 21 0 4 741 643 291 84 70 chr5 20520664 20520949 -132016310 + B4A SINE B4 2 290 -2 4 741 548 348 22 0 chr5 20521083 20521221 -132016038 - B1F2 SINE Alu -8 141 1 4 741 911 249 11 16 chr5 20521684 20521868 -132015391 + B3 SINE B2 33 215 -1 5 741 24 53 0 0 chr5 20522151 20522189 -132015070 + AT_rich Low_complexity Low_complexity 1 38 0 5 741 513 213 105 52 chr5 20522232 20522480 -132014779 - L1ME2z LINE L1 -154 6290 6030 5 741 26 64 0 0 chr5 20522858 20522905 -132014354 + AT_rich Low_complexity Low_complexity 1 47 0 5 741 1868 198 127 14 chr5 20522972 20523478 -132013781 + Lx5 LINE L1 6484 7046 -4 5 741 280 284 20 31 chr5 20523518 20523616 -132013643 + Lx8 LINE L1 7141 7237 -236 5 741 964 196 66 20 chr5 20523641 20523839 -132013420 - B3 SINE B2 -3 213 7 5 741 30 0 0 0 chr5 20524055 20524085 -132013174 + AT_rich Low_complexity Low_complexity 1 30 0 5 741 1180 62 7 0 chr5 20524242 20524388 -132012871 - B1_Mus2 SINE Alu 0 147 1 5 741 729 162 14 131 chr5 20524520 20524742 -132012517 + B3 SINE B2 1 195 0 5 741 767 171 234 0 chr5 20524762 20524937 -132012322 + B3 SINE B2 1 216 0 6 741 664 152 33 80 chr5 20525354 20525504 -132011755 + B1_Mur2 SINE Alu 5 147 -2 6 741 597 133 0 0 chr5 20525535 20525633 -132011626 + (GA)n Simple_repeat Simple_repeat 2 99 0 6 741 1406 85 0 0 chr5 20525864 20526053 -132011206 + B2_Mm1t SINE B2 2 190 -3 6 741 752 161 58 7 chr5 20526064 20526202 -132011057 + B1_Mus2 SINE Alu 2 146 -1 6 741 1133 68 0 0 chr5 20526343 20526489 -132010770 + B1_Mm SINE Alu 2 147 0 6 741 27 62 0 0 chr5 20526529 20526577 -132010682 + AT_rich Low_complexity Low_complexity 1 48 0 6 741 307 392 0 0 chr5 20527003 20527110 -132010149 + PB1D10 SINE Alu 2 108 -9 6 741 255 238 0 0 chr5 20527193 20527256 -132010003 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 6 741 437 250 42 0 chr5 20527256 20527352 -132009907 - PB1D7 SINE Alu 0 120 21 6 741 21 0 0 0 chr5 20527414 20527435 -132009824 + AT_rich Low_complexity Low_complexity 1 21 0 7 741 531 188 152 0 chr5 20528281 20528393 -132008866 + B1_Mur4 SINE Alu 22 150 0 7 741 215 31 31 0 chr5 20528397 20528429 -132008830 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 7 741 361 245 244 30 chr5 20528436 20528604 -132008655 - B3 SINE B2 -11 205 2 7 741 427 281 64 7 chr5 20528898 20529038 -132008221 - RSINE1 SINE B4 -16 149 2 7 741 255 188 344 0 chr5 20529040 20529104 -132008155 + B1_Mur2 SINE Alu 62 147 -2 7 741 247 333 0 0 chr5 20529257 20529314 -132007945 - PB1D10 SINE Alu -9 108 52 7 741 231 36 0 0 chr5 20529314 20529342 -132007917 + (T)n Simple_repeat Simple_repeat 1 28 0 7 741 837 96 6 62 chr5 20529342 20529507 -132007752 - B1_Mm SINE Alu 0 149 11 7 741 581 270 34 11 chr5 20529734 20529910 -132007349 + B3A SINE B2 3 182 -16 7 741 231 297 49 108 chr5 20531011 20531113 -132006146 + PB1D7 SINE Alu 2 97 -23 8 741 351 298 78 9 chr5 20531502 20531617 -132005642 + B4A SINE B4 157 279 -13 8 741 286 312 147 0 chr5 20531661 20531770 -132005489 + PB1 SINE Alu 1 125 -2 8 741 282 285 59 79 chr5 20531782 20531896 -132005363 + L1ME1 LINE L1 5493 5597 -582 8 741 307 313 17 9 chr5 20531896 20532012 -132005247 + PB1D10 SINE Alu 1 117 0 8 741 282 285 59 79 chr5 20532012 20532099 -132005160 + L1ME1 LINE L1 5598 5690 -489 8 741 333 328 200 15 chr5 20532139 20532399 -132004860 + L1ME1 LINE L1 5870 6177 -2 8 741 180 242 58 43 chr5 20532753 20532822 -132004437 + MIRm SINE MIR 81 150 -126 8 741 1799 115 59 135 chr5 20533296 20533610 -132003649 + ORR1B1 LTR MaLR 33 339 -55 8 741 1595 27 21 0 chr5 20533610 20533798 -132003461 + B2_Mm1t SINE B2 2 193 0 8 741 1799 115 59 135 chr5 20533798 20533875 -132003384 + ORR1B1 LTR MaLR 340 394 0 8 741 844 274 129 12 chr5 20533897 20534222 -132003037 + MLT1A0 LTR MaLR 3 365 0 8 741 570 290 14 112 chr5 20534518 20534794 -132002465 + B4 SINE B4 44 292 0 8 741 289 273 102 21 chr5 20536999 20537186 -132000073 + L1MC LINE L1 5631 5832 -2050 9 741 29 0 0 0 chr5 20537857 20537886 -131999373 + AT_rich Low_complexity Low_complexity 1 29 0 9 741 251 165 20 150 chr5 20538000 20538054 -131999205 + L1MA6 LINE L1 6206 6246 -54 9 741 270 0 0 0 chr5 20538054 20538084 -131999175 + (CATA)n Simple_repeat Simple_repeat 2 31 0 9 741 251 165 20 150 chr5 20538084 20538129 -131999130 + L1MA6 LINE L1 6247 6292 -8 9 741 1363 94 15 20 chr5 20538757 20538953 -131998306 - B2_Mm2 SINE B2 0 195 1 9 741 757 244 114 57 chr5 20539241 20539613 -131997646 + RCHARR1 DNA MER1_type 36 479 -495 9 741 993 265 30 15 chr5 20539629 20539893 -131997366 + B4A SINE B4 15 282 -10 9 741 1010 218 22 52 chr5 20539921 20540192 -131997067 + RCHARR1 DNA MER1_type 485 747 -227 9 741 715 239 105 56 chr5 20540401 20540739 -131996520 - MTD LTR MaLR -14 365 1 9 741 1242 41 0 0 chr5 20540933 20541079 -131996180 + B1_Mus2 SINE Alu 2 147 0 9 741 186 43 0 0 chr5 20541079 20541102 -131996157 + (A)n Simple_repeat Simple_repeat 1 23 0 9 741 257 226 65 0 chr5 20541102 20541164 -131996095 + RCHARR1 DNA MER1_type 852 917 -57 9 741 1091 93 128 6 chr5 20541287 20541459 -131995800 - B2_Mm2 SINE B2 0 195 3 1 741 223 310 0 40 chr5 20541882 20541956 -131995303 - B1F2 SINE Alu -78 71 1 1 741 657 263 45 0 chr5 20542061 20542217 -131995042 + RSINE1 SINE B4 3 165 0 1 741 270 238 32 198 chr5 20542485 20542642 -131994617 + MT2B LTR ERVL 105 235 -366 1 741 546 168 0 65 chr5 20542558 20542666 -131994593 + PB1D9 SINE Alu 8 108 -12 1 741 263 211 113 0 chr5 20542684 20542755 -131994504 + ID_B1 SINE B4 140 218 -6 1 741 285 51 0 0 chr5 20543158 20543197 -131994062 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 741 28 29 0 0 chr5 20543465 20543500 -131993759 + AT_rich Low_complexity Low_complexity 1 35 0 1 741 311 85 34 0 chr5 20543545 20543604 -131993655 + (TCTG)n Simple_repeat Simple_repeat 2 62 0 1 741 653 19 324 0 chr5 20543604 20543709 -131993550 - B1_Mus2 SINE Alu -7 140 2 1 741 365 267 12 0 chr5 20543868 20543954 -131993305 - 5S rRNA rRNA -32 89 3 1 741 254 247 80 27 chr5 20544094 20544169 -131993090 + ID4_ SINE ID 5 83 0 1 741 945 305 144 29 chr5 20544426 20544878 -131992381 - MER68 LTR ERVL -59 504 1 1 741 299 163 190 80 chr5 20545318 20545347 -131991912 + CYRA11_Mm Unknown Y-chromosome 140 250 -367 1 741 460 29 113 42 chr5 20545347 20545418 -131991841 - URR1B DNA MER1_type 0 225 150 1 741 1055 42 13 47 chr5 20545418 20545567 -131991692 - B1_Mus2 SINE Alu -2 145 2 1 741 321 247 39 13 chr5 20545888 20545966 -131991293 - B1F SINE Alu -61 88 9 1 741 844 295 77 47 chr5 20546094 20546393 -131990866 + ORR1E LTR MaLR 32 339 -20 1 741 1168 202 232 37 chr5 20546484 20546847 -131990412 + L1MCa LINE L1 2066 2461 -3860 1 741 263 301 62 41 chr5 20546847 20546944 -131990315 + PB1D10 SINE Alu 3 101 -16 1 741 1168 248 81 110 chr5 20546944 20547519 -131989740 + L1MCa LINE L1 2462 3052 -3269 1 741 479 79 0 0 chr5 20547523 20547586 -131989673 + B2_Mm2 SINE B2 2 64 -131 1 741 370 248 35 126 chr5 20547586 20547666 -131989593 + B4A SINE B4 2 131 -161 1 741 227 274 20 0 chr5 20547621 20547672 -131989587 + AluF_3 SINE Alu 137 188 -123 1 741 528 242 228 20 chr5 20547812 20548278 -131988981 + Charlie1a DNA MER1_type 542 1211 -244 1 741 590 158 211 0 chr5 20548745 20548859 -131988400 - B1_Mur2 SINE Alu -7 142 5 1 741 784 201 105 5 chr5 20549236 20549426 -131987833 + B3 SINE B2 4 212 -4 1 741 684 223 192 32 chr5 20550445 20550695 -131986564 - B4A SINE B4 0 292 3 1 741 676 247 82 24 chr5 20550738 20550908 -131986351 - B3A SINE B2 -18 180 1 1 741 1235 86 17 0 chr5 20550926 20551100 -131986159 - B2_Mm2 SINE B2 -18 177 1 1 741 1907 199 26 26 chr5 20551179 20551598 -131985661 + MTD LTR MaLR 1 419 0 1 741 393 212 25 0 chr5 20551896 20551976 -131985283 + PB1D10 SINE Alu 9 90 -27 1 741 190 292 95 27 chr5 20552145 20552219 -131985040 + L3 LINE CR1 4208 4286 -203 1 741 371 307 11 0 chr5 20552481 20552569 -131984690 + PB1D10 SINE Alu 6 94 -23 1 741 311 183 50 0 chr5 20552591 20552651 -131984608 - B1_Mur2 SINE Alu -5 144 82 1 741 563 196 20 10 chr5 20552691 20552789 -131984470 + B1_Mur4 SINE Alu 13 111 -39 1 741 201 39 0 0 chr5 20552789 20552815 -131984444 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 741 690 220 52 32 chr5 20553292 20553447 -131983812 - B3A SINE B2 -11 187 30 1 741 452 272 39 123 chr5 20553470 20553625 -131983634 - RSINE1 SINE B4 -12 153 12 1 741 875 59 0 8 chr5 20554050 20554169 -131983090 + (TCCC)n Simple_repeat Simple_repeat 3 120 0 1 741 788 128 20 41 chr5 20554169 20554308 -131982951 - B1_Mur4 SINE Alu -12 138 3 1 741 653 252 168 29 chr5 20554640 20555016 -131982243 + L1MB8 LINE L1 5440 5867 -311 1 741 467 295 63 39 chr5 20555225 20555421 -131981838 + L1MB8 LINE L1 5914 6120 -58 1 741 1282 100 11 0 chr5 20555421 20555601 -131981658 - B2_Mm1a SINE B2 -10 183 2 1 741 467 295 63 39 chr5 20555601 20555658 -131981601 + L1MB8 LINE L1 6121 6173 -5 1 741 201 309 109 40 chr5 20556280 20556381 -131980878 + L2 LINE L2 2396 2503 -916 1 741 599 239 59 89 chr5 20556865 20557067 -131980192 - RMER30 DNA MER1_type -2 200 5 1 741 854 194 95 20 chr5 20557305 20557505 -131979754 + B3 SINE B2 2 216 0 1 741 285 287 38 38 chr5 20557753 20557858 -131979401 - PB1D7 SINE Alu -7 113 9 1 741 356 336 0 0 chr5 20557931 20558047 -131979212 + ID_B1 SINE B4 109 224 0 1 741 311 237 39 49 chr5 20558455 20558578 -131978681 + B1F SINE Alu 4 120 0 1 741 21 0 0 0 chr5 20561188 20561209 -131976050 + GC_rich Low_complexity Low_complexity 1 21 0 1 741 21 57 0 0 chr5 20561223 20561258 -131976001 + GC_rich Low_complexity Low_complexity 1 35 0 1 741 245 224 50 30 chr5 20561558 20561659 -131975600 + (CCCCG)n Simple_repeat Simple_repeat 5 107 0 1 741 257 266 12 64 chr5 20561844 20562017 -131975242 + C-rich Low_complexity Low_complexity 4 167 0 1 741 184 318 0 57 chr5 20562627 20562697 -131974562 - MIRm SINE MIR -164 112 47 1 741 393 230 90 0 chr5 20563202 20563302 -131973957 - PB1D7 SINE Alu 0 120 12 1 741 28 86 0 0 chr5 20563486 20563556 -131973703 + AT_rich Low_complexity Low_complexity 1 70 0 1 741 1147 70 13 0 chr5 20563563 20563721 -131973538 - B2_Mm2 SINE B2 -33 162 3 1 741 240 273 18 0 chr5 20564702 20564757 -131972502 + ID4 SINE ID 2 57 -26 1 741 1024 127 6 0 chr5 20565062 20565220 -131972039 + B2_Mm1a SINE B2 2 160 -33 1 741 180 0 0 0 chr5 20565220 20565240 -131972019 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1 741 369 136 0 70 chr5 20565244 20565256 -131972003 + B4 SINE B4 80 86 -206 1 741 438 82 0 0 chr5 20565256 20565317 -131971942 + B1_Mus2 SINE Alu 2 62 -85 1 741 751 214 43 60 chr5 20565339 20565523 -131971736 - B3A SINE B2 -17 181 1 1 741 453 248 45 23 chr5 20565551 20565683 -131971576 - B1F SINE Alu -12 137 3 1 741 252 0 0 0 chr5 20565853 20565881 -131971378 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 741 290 324 126 0 chr5 20565881 20565992 -131971267 - ID_B1 SINE B4 -9 215 91 1 741 248 328 126 16 chr5 20566131 20566258 -131971001 + MLT1M LTR MaLR 188 328 -344 1 741 2404 35 3 0 chr5 20566459 20566744 -131970515 - L1Md_A LINE L1 0 6582 6297 1 741 733 187 259 0 chr5 20567829 20567995 -131969264 + B3 SINE B2 2 210 -6 1 741 4697 180 126 12 chr5 20568137 20569129 -131968130 + Lx9 LINE L1 6514 7618 -26 1 741 978 204 51 5 chr5 20569150 20569347 -131967912 + B3 SINE B2 1 206 -10 1 741 266 294 108 8 chr5 20569752 20569872 -131967387 + L1MB2 LINE L1 5902 6033 -138 1 741 252 226 0 0 chr5 20569889 20569942 -131967317 + L1MB2 LINE L1 6105 6157 -26 1 741 482 178 76 62 chr5 20569958 20570102 -131967157 + L1MB4 LINE L1 6035 6180 0 1 741 1177 75 0 0 chr5 20570145 20570292 -131966967 - B1_Mus2 SINE Alu 0 147 1 1 741 743 120 0 33 chr5 20570414 20570535 -131966724 - B1_Mur4 SINE Alu -30 120 4 1 741 438 281 100 100 chr5 20570637 20570938 -131966321 + RMER15 LTR ERVL 275 575 0 1 741 332 352 55 55 chr5 20571138 20571303 -131965956 - B4A SINE B4 -127 165 1 1 741 293 296 58 70 chr5 20571351 20571507 -131965752 - L1MB5 LINE L1 -152 6022 5869 1 741 517 194 0 20 chr5 20571625 20571725 -131965534 + PB1D10 SINE Alu 15 112 -5 1 741 316 221 195 0 chr5 20571725 20571838 -131965421 - L1MB2 LINE L1 -14 6157 6023 1 741 222 37 0 0 chr5 20572232 20572259 -131965000 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 741 1169 82 0 0 chr5 20572895 20573042 -131964217 + B1_Mus1 SINE Alu 2 148 0 1 741 209 204 0 0 chr5 20573052 20573101 -131964158 + A-rich Low_complexity Low_complexity 1 49 0 1 741 844 261 63 19 chr5 20573448 20573720 -131963539 + MTD LTR MaLR 1 322 -97 1 741 725 253 226 32 chr5 20573720 20574034 -131963225 + MTE2b LTR MaLR 1 375 -4 1 741 558 232 14 48 chr5 20574079 20574224 -131963035 + B1_Mur1 SINE Alu 5 144 -5 1 741 441 279 68 42 chr5 20574580 20574771 -131962488 - Lx6 LINE L1 -16 7444 7249 1 741 261 200 147 0 chr5 20575007 20575082 -131962177 + L1MA9 LINE L1 6227 6312 0 1 741 823 247 26 0 chr5 20575135 20575325 -131961934 + B3 SINE B2 21 215 -1 1 741 698 207 7 7 chr5 20575682 20575823 -131961436 - B1_Mur1 SINE Alu -1 148 8 1 741 216 167 0 0 chr5 20575893 20575929 -131961330 + GA-rich Low_complexity Low_complexity 5 40 0 1 741 290 303 0 0 chr5 20576247 20576313 -131960946 - ID4_ SINE ID -11 72 7 1 741 565 317 157 34 chr5 20576629 20577037 -131960222 + MLT1F LTR MaLR 4 461 -87 1 741 868 51 8 0 chr5 20577559 20577676 -131959583 + B1_Mus1 SINE Alu 31 148 0 1 741 957 186 50 85 chr5 20578018 20578103 -131959156 - RLTR16 LTR ERVK 0 505 413 1 741 387 0 0 0 chr5 20578103 20578146 -131959113 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 741 957 186 50 85 chr5 20578146 20578170 -131959089 - RLTR16 LTR ERVK -93 412 405 1 92 1655 21 21 0 chr5 20578170 20578359 -131958900 - B2_Mm1a SINE B2 0 193 1 1 742 957 186 50 85 chr5 20578359 20578505 -131958754 - RLTR16 LTR ERVK -101 404 258 1 742 2588 30 3 3 chr5 20578505 20578836 -131958423 - IAPEY_LTR LTR ERVK 0 385 55 1 742 1412 157 31 8 chr5 20578836 20579093 -131958166 - RLTR16 LTR ERVK -242 263 1 1 742 354 290 153 0 chr5 20579213 20579344 -131957915 - RSINE1 SINE B4 -7 158 8 1 742 576 253 98 67 chr5 20579360 20579614 -131957645 - B4A SINE B4 0 292 31 1 742 287 295 13 0 chr5 20579678 20579756 -131957503 - B1F SINE Alu -15 134 56 1 742 819 181 14 20 chr5 20579925 20580072 -131957187 - B1_Mm SINE Alu 0 147 2 2 742 905 202 26 60 chr5 20580280 20580329 -131956930 + MTD LTR MaLR 1 44 -375 2 742 2254 121 3 0 chr5 20580329 20580651 -131956608 + ORR1A2 LTR MaLR 3 325 -2 2 742 905 202 26 60 chr5 20580651 20580833 -131956426 + MTD LTR MaLR 45 224 -195 2 742 611 275 0 0 chr5 20580823 20580954 -131956305 + B1_Mur1 SINE Alu 6 136 -13 2 742 570 35 0 34 chr5 20580954 20581042 -131956217 + (CAAAA)n Simple_repeat Simple_repeat 1 85 0 2 742 432 218 8 31 chr5 20581042 20581170 -131956089 + MTD LTR MaLR 202 326 -93 2 742 2760 70 72 3 chr5 20581554 20581928 -131955331 - MTB LTR MaLR 0 400 1 2 742 2356 102 3 11 chr5 20582142 20582500 -131954759 + RLTR19 LTR ERVK 1 355 -144 2 742 8568 185 28 139 chr5 20582502 20583512 -131953747 + L1_Mur3 LINE L1 2366 3417 -2463 2 742 1582 33 16 0 chr5 20583512 20583694 -131953565 + B2_Mm1a SINE B2 2 186 -7 2 742 8568 185 28 139 chr5 20583694 20584032 -131953227 + L1_Mur3 LINE L1 3418 3746 -2134 2 742 1936 59 118 0 chr5 20584032 20584319 -131952940 + MTB LTR MaLR 80 400 0 2 742 8568 185 28 139 chr5 20584319 20585179 -131952080 + L1_Mur3 LINE L1 3747 4584 -1296 2 742 2542 151 0 10 chr5 20585201 20585609 -131951650 + MTB_Mm LTR MaLR 1 404 -3 2 742 32337 109 25 19 chr5 20585693 20591978 -131945281 - L1_Mus2 LINE L1 -2 6564 245 2 742 231 204 0 0 chr5 20591996 20592040 -131945219 + ID4 SINE ID 26 69 -14 2 742 539 276 16 8 chr5 20592294 20592422 -131944837 - ID_B1 SINE B4 -16 208 80 2 742 251 206 95 14 chr5 20592821 20592895 -131944364 - ID2 SINE ID 0 83 4 2 742 247 346 28 0 chr5 20592895 20593002 -131944257 - PB1D10 SINE Alu -7 110 1 2 742 4466 65 17 9 chr5 20593007 20593581 -131943678 + L1Md_F2 LINE L1 5992 6570 -12 2 742 463 249 116 66 chr5 20593598 20593779 -131943480 - B3A SINE B2 -7 191 2 2 742 205 350 78 51 chr5 20594092 20594309 -131942950 - MIR SINE MIR -35 227 5 2 742 299 203 0 78 chr5 20594524 20594588 -131942671 + URR1B DNA MER1_type 1 59 -166 2 742 471 254 18 0 chr5 20594754 20594864 -131942395 + B3 SINE B2 3 114 -102 2 742 551 127 190 25 chr5 20594884 20595005 -131942254 + URR1B DNA MER1_type 47 187 -38 2 742 605 180 81 16 chr5 20595029 20595153 -131942106 - B1_Mus2 SINE Alu -1 146 15 2 742 213 311 115 88 chr5 20595037 20595185 -131942074 - B4 SINE B4 -73 219 68 2 742 608 159 97 0 chr5 20595440 20595553 -131941706 + B1_Mur1 SINE Alu 17 140 -9 2 742 562 221 0 0 chr5 20595679 20595783 -131941476 + B3 SINE B2 2 105 -111 2 742 200 167 0 0 chr5 20595956 20595986 -131941273 + polypyrimidine Low_complexity Low_complexity 3 32 0 2 742 374 216 0 58 chr5 20596057 20596160 -131941099 - MLT1F2 LTR MaLR -16 544 458 2 742 334 195 50 121 chr5 20596242 20596341 -131940918 + RMER20A LTR ERVK 70 161 -355 2 742 263 374 0 29 chr5 20596511 20596613 -131940646 + RSINE1 SINE B4 65 163 -2 2 742 322 283 0 11 chr5 20596691 20596784 -131940475 - MTEb LTR MaLR -9 370 279 2 742 308 298 25 22 chr5 20597591 20597713 -131939546 - PB1D9 SINE Alu -21 128 1 2 742 426 331 52 7 chr5 20597713 20597790 -131939469 - B4 SINE B4 -208 84 1 2 742 435 200 129 182 chr5 20597971 20598234 -131939025 + MTE2a LTR MaLR 130 378 -1 2 742 356 246 0 14 chr5 20598554 20598624 -131938635 + ID4 SINE ID 3 71 -12 2 742 218 162 150 88 chr5 20598653 20598745 -131938514 + PB1D10 SINE Alu 14 109 -8 2 742 6067 76 42 6 chr5 20599220 20600054 -131937205 + Lx3_Mus LINE L1 6134 6997 -12 2 742 22 0 0 0 chr5 20600124 20600146 -131937113 + AT_rich Low_complexity Low_complexity 1 22 0 2 742 784 302 62 8 chr5 20600459 20600719 -131936540 + B4A SINE B4 15 288 -4 2 742 501 289 54 32 chr5 20600935 20601121 -131936138 - RMER15 LTR ERVL -14 561 372 2 742 1915 148 16 7 chr5 20601841 20602147 -131935112 - RLTR27 LTR ERVK 0 309 1 2 742 1414 143 64 24 chr5 20602147 20602398 -131934861 - IAP-d-int LTR ERVK 0 7581 7321 2 742 1499 91 5 0 chr5 20602537 20602734 -131934525 - IAP-d-int LTR ERVK -217 6325 6128 2 742 692 96 0 0 chr5 20602737 20602831 -131934428 - IAP-d-int LTR ERVK -521 6021 5928 2 742 2108 48 116 3 chr5 20602881 20603251 -131934008 - IAP-d-int LTR ERVK -1124 5418 5007 2 742 686 205 40 7 chr5 20603251 20603403 -131933856 - IAP-d-int LTR ERVK -6039 503 347 2 742 652 100 0 39 chr5 20603397 20603501 -131933758 - IAP-d-int LTR ERVK -6365 177 78 2 742 770 238 23 32 chr5 20603595 20603912 -131933347 - RLTR10-int LTR ERVK -6716 865 553 2 742 276 217 0 0 chr5 20604134 20604180 -131933079 - RLTR10-int LTR ERVK -7314 267 222 2 742 1904 140 30 3 chr5 20604217 20604518 -131932741 - RLTR27 LTR ERVK 0 309 1 2 742 321 235 31 85 chr5 20604750 20604866 -131932393 + RLTR15 LTR ERVK 1 112 -247 2 742 279 0 0 0 chr5 20604866 20604897 -131932362 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 742 321 235 31 85 chr5 20604897 20604910 -131932349 + RLTR15 LTR ERVK 113 123 -236 2 742 240 185 0 0 chr5 20605275 20605329 -131931930 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 742 255 309 45 109 chr5 20605383 20605539 -131931720 + B1F SINE Alu 2 147 -2 2 742 203 309 188 16 chr5 20605620 20605748 -131931511 + MIRb SINE MIR 12 161 -107 2 742 792 164 0 0 chr5 20605846 20605980 -131931279 - B1_Mus2 SINE Alu -2 145 12 2 742 3314 78 0 27 chr5 20606107 20606556 -131930703 - L1Md_F2 LINE L1 -12 6570 6134 2 742 3050 18 0 0 chr5 20606556 20606893 -131930366 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 742 51283 17 12 4 chr5 20606893 20613287 -131923972 + IAPEz-int LTR ERVK 8 6481 0 2 742 3022 15 3 0 chr5 20613287 20613623 -131923636 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 742 1167 36 0 0 chr5 20613623 20613760 -131923499 - L1Md_F2 LINE L1 -443 6139 6003 2 742 8381 46 21 0 chr5 20613759 20614910 -131922349 + L1Md_F2 LINE L1 4811 5995 -587 2 742 285 308 86 11 chr5 20615124 20615311 -131921948 + L1MC4 LINE L1 7459 7659 -383 2 742 493 280 18 77 chr5 20615342 20615512 -131921747 - RSINE1 SINE B4 0 165 6 2 742 550 291 13 13 chr5 20615538 20615688 -131921571 - ID_B1 SINE B4 -9 215 66 2 742 491 292 16 76 chr5 20615761 20615946 -131921313 + B4A SINE B4 112 285 -7 2 742 21 0 0 0 chr5 20616194 20616215 -131921044 + AT_rich Low_complexity Low_complexity 1 21 0 2 742 269 173 0 37 chr5 20616232 20616286 -131920973 + PB1D7 SINE Alu 69 120 0 2 742 569 277 67 94 chr5 20616777 20617076 -131920183 - B4A SINE B4 -1 291 1 2 742 776 302 25 12 chr5 20617126 20617371 -131919888 + B4A SINE B4 3 250 -42 2 742 339 130 0 0 chr5 20617736 20617790 -131919469 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 742 217 183 16 16 chr5 20617837 20617898 -131919361 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 2 742 504 246 57 25 chr5 20617898 20618083 -131919176 - B3 SINE B2 -9 186 2 2 742 1485 291 171 24 chr5 20618127 20618935 -131918324 - L1MA6 LINE L1 -62 6238 5312 2 742 479 195 42 17 chr5 20618955 20619075 -131918184 - L1MA6 LINE L1 -935 5208 5086 2 742 471 267 57 57 chr5 20619080 20619239 -131918020 + RSINE1 SINE B4 5 163 -2 2 742 659 204 62 29 chr5 20619241 20619481 -131917778 - RLTR20B2 LTR ERVK -109 451 83 2 742 496 125 13 53 chr5 20619485 20619637 -131917622 + (CA)n Simple_repeat Simple_repeat 1 146 0 2 742 293 0 27 0 chr5 20619660 20619697 -131917562 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 742 1301 300 105 35 chr5 20619718 20620460 -131916799 - L1MA6 LINE L1 -1045 5098 4305 2 742 3714 101 49 16 chr5 20620575 20620700 -131916559 - Lx LINE L1 0 6654 6535 2 742 207 0 0 0 chr5 20620700 20620723 -131916536 + (CCCA)n Simple_repeat Simple_repeat 2 24 0 2 742 3714 101 49 16 chr5 20620723 20621150 -131916109 - Lx LINE L1 -120 6534 6085 2 742 276 183 92 51 chr5 20621155 20621253 -131916006 - L1MA6 LINE L1 -1840 4300 4199 2 742 405 0 0 0 chr5 20622680 20622725 -131914534 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 2 742 277 299 62 0 chr5 20622725 20622822 -131914437 - PB1D7 SINE Alu -13 107 5 2 742 644 238 43 12 chr5 20622738 20622900 -131914359 - ID_B1 SINE B4 -55 169 3 2 742 965 178 94 0 chr5 20623695 20623886 -131913373 + B3 SINE B2 3 211 -5 2 742 293 210 25 0 chr5 20624081 20624162 -131913097 + 7SLRNA srpRNA srpRNA 226 308 -6 2 742 649 149 8 0 chr5 20624508 20624629 -131912630 - Lx9 LINE L1 -7 7637 7516 2 742 210 184 0 0 chr5 20624823 20624861 -131912398 + ID4 SINE ID 2 39 -44 2 742 364 292 49 42 chr5 20625393 20625407 -131911852 + B1_Mus1 SINE Alu 1 143 -4 2 742 587 250 0 0 chr5 20625407 20625535 -131911724 + ID_B1 SINE B4 92 219 -5 2 742 695 124 93 0 chr5 20626611 20626740 -131910519 - B1_Mus1 SINE Alu -1 147 7 2 742 367 265 29 19 chr5 20627059 20627163 -131910096 - ID_B1 SINE B4 -1 223 119 2 742 245 287 136 75 chr5 20627262 20627541 -131909718 + Charlie2b DNA MER1_type 1994 2289 -493 2 742 237 163 0 0 chr5 20627574 20627623 -131909636 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 742 529 147 10 59 chr5 20627641 20627742 -131909517 - B1_Mur2 SINE Alu -45 104 9 2 742 288 250 88 20 chr5 20628077 20628179 -131909080 - Tigger5 DNA MER2_type -1 2405 2297 2 742 421 302 39 73 chr5 20628186 20628418 -131908841 - Tigger5 DNA MER2_type -2171 235 12 2 742 199 279 186 0 chr5 20629253 20629339 -131907920 - L2 LINE L2 -926 2493 2392 2 742 306 0 0 0 chr5 20631405 20631439 -131905820 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2 742 300 53 0 0 chr5 20631441 20631479 -131905780 + (TGG)n Simple_repeat Simple_repeat 1 38 0 2 742 228 229 0 0 chr5 20632014 20632062 -131905197 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 742 189 0 0 0 chr5 20632972 20632993 -131904266 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 742 3386 30 5 2 chr5 20633196 20633591 -131903668 + MTA_Mm LTR MaLR 1 396 0 2 742 1938 186 80 10 chr5 20633758 20634171 -131903088 + Lx9 LINE L1 7203 7644 0 2 742 337 309 0 70 chr5 20635264 20635379 -131901880 + PB1D10 SINE Alu 2 108 -9 2 742 224 308 0 44 chr5 20635395 20635463 -131901796 + polypurine Low_complexity Low_complexity 2 66 0 2 742 282 56 0 0 chr5 20635691 20635727 -131901532 + (GA)n Simple_repeat Simple_repeat 2 37 0 2 742 579 204 0 0 chr5 20635962 20636070 -131901189 - ID_B1 SINE B4 -3 221 114 2 742 191 370 66 6 chr5 20636086 20636252 -131901007 - L2 LINE L2 -915 2504 2329 2 742 580 286 191 10 chr5 20636274 20636567 -131900692 - MLT1A0 LTR MaLR -19 346 1 2 742 204 233 137 0 chr5 20636609 20636682 -131900577 - MER5A DNA MER1_type -3 186 104 2 742 23 33 0 0 chr5 20636911 20636941 -131900318 + AT_rich Low_complexity Low_complexity 1 30 0 2 742 215 274 73 49 chr5 20637801 20637924 -131899335 + MIRm SINE MIR 27 152 -124 2 742 2010 60 0 0 chr5 20638619 20638867 -131898392 + L1_Mus1 LINE L1 6320 6567 0 2 742 198 0 0 0 chr5 20639774 20639796 -131897463 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2 742 495 124 17 69 chr5 20640028 20640154 -131897105 + B1_Mur4 SINE Alu 1 149 -1 3 742 690 184 257 22 chr5 20640404 20640587 -131896672 - URR1A DNA MER1_type 0 226 1 3 742 185 0 40 0 chr5 20641215 20641240 -131896019 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 742 22 35 0 0 chr5 20641560 20641589 -131895670 + AT_rich Low_complexity Low_complexity 1 29 0 3 742 622 280 125 19 chr5 20642732 20643093 -131894166 + Charlie2b DNA MER1_type 1851 2249 -533 3 742 180 0 0 0 chr5 20643108 20643128 -131894131 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 3 742 626 173 0 136 chr5 20643145 20643238 -131894021 - B1_Mus2 SINE Alu -6 141 58 3 742 1439 93 0 5 chr5 20643238 20643433 -131893826 + B2_Mm2 SINE B2 2 195 0 3 742 626 173 0 136 chr5 20643433 20643493 -131893766 - B1_Mus2 SINE Alu -90 57 9 3 742 328 269 34 6 chr5 20643624 20643800 -131893459 + Charlie2b DNA MER1_type 2343 2523 -259 3 742 564 333 96 0 chr5 20643841 20644060 -131893199 + B4A SINE B4 52 291 -1 3 742 348 24 0 0 chr5 20644082 20644123 -131893136 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 742 2505 92 3 0 chr5 20644270 20644595 -131892664 - ORR1A3 LTR MaLR 0 326 1 3 742 362 194 0 0 chr5 20644711 20644778 -131892481 + B2_Mm2 SINE B2 2 68 -127 3 742 1081 29 0 0 chr5 20644794 20644932 -131892327 - B1_Mm SINE Alu 0 147 10 3 742 180 158 0 0 chr5 20645034 20645072 -131892187 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 742 21 36 0 0 chr5 20645072 20645100 -131892159 + AT_rich Low_complexity Low_complexity 1 28 0 3 742 294 277 44 9 chr5 20645385 20645498 -131891761 + L2 LINE L2 2308 2424 -995 3 742 361 341 30 6 chr5 20645772 20645940 -131891319 - L1MD2 LINE L1 -6236 311 140 3 742 803 168 192 16 chr5 20645973 20646155 -131891104 - B3 SINE B2 0 216 3 3 742 249 348 26 9 chr5 20646161 20646199 -131891060 - PB1D7 SINE Alu 0 120 82 3 742 450 0 0 0 chr5 20646199 20646249 -131891010 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 742 243 0 0 0 chr5 20646249 20646275 -131890984 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 742 249 348 26 9 chr5 20646275 20646351 -131890908 - PB1D7 SINE Alu -39 81 5 3 742 269 250 12 50 chr5 20646276 20646356 -131890903 - ID_B1 SINE B4 -69 155 79 3 742 245 246 116 0 chr5 20647013 20647082 -131890177 - B3A SINE B2 -36 162 86 3 742 369 252 37 0 chr5 20647124 20647231 -131890028 - B3 SINE B2 -103 113 3 3 742 505 180 108 79 chr5 20648522 20648661 -131888598 - B1_Mur2 SINE Alu 0 149 7 3 742 235 333 92 38 chr5 20648978 20649109 -131888150 + L2a LINE L2 3276 3413 -13 3 742 267 31 0 0 chr5 20649109 20649141 -131888118 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 3 742 315 0 0 0 chr5 20649899 20649934 -131887325 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 742 21 0 0 0 chr5 20650110 20650131 -131887128 + AT_rich Low_complexity Low_complexity 1 21 0 3 742 339 332 26 91 chr5 20650373 20650638 -131886621 + MLT1N2 LTR MaLR 154 401 -161 3 742 471 368 15 0 chr5 20650765 20650966 -131886293 - MIR SINE MIR -25 237 34 3 742 228 308 168 0 chr5 20650988 20651131 -131886128 - L1M5 LINE L1 -215 5909 5743 3 742 3077 66 5 10 chr5 20651310 20651708 -131885551 - MTA_Mm LTR MaLR 0 396 1 3 742 545 320 77 11 chr5 20651915 20652187 -131885072 + B4 SINE B4 1 290 -2 3 742 246 289 0 0 chr5 20652319 20652402 -131884857 + T-rich Low_complexity Low_complexity 1 83 0 3 742 731 135 143 0 chr5 20652403 20652529 -131884730 - B1_Mur4 SINE Alu -6 144 1 3 742 594 140 0 0 chr5 20652814 20652914 -131884345 + (TTC)n Simple_repeat Simple_repeat 3 102 0 3 742 1106 132 5 0 chr5 20652914 20653097 -131884162 - B2_Mm2 SINE B2 0 193 2 3 742 289 83 42 0 chr5 20653542 20653590 -131883669 + ORR1B1 LTR MaLR 345 394 0 3 742 189 175 0 0 chr5 20654178 20654218 -131883041 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 3 742 512 260 64 43 chr5 20654593 20654826 -131882433 - L3 LINE CR1 -164 4325 4088 3 742 663 233 24 35 chr5 20655360 20655529 -131881730 - B3A SINE B2 -30 168 2 3 742 280 290 105 55 chr5 20655533 20655752 -131881507 - ORR1E LTR MaLR -62 297 68 3 742 264 30 0 0 chr5 20656045 20656078 -131881181 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 3 742 1119 206 95 171 chr5 20656708 20657212 -131880047 + RMER4B LTR ERVK 1 466 0 3 742 22 70 0 0 chr5 20657513 20657556 -131879703 + AT_rich Low_complexity Low_complexity 1 43 0 3 742 1706 76 0 0 chr5 20657556 20657780 -131879479 + L1Md_T LINE L1 6359 6582 0 3 742 796 170 7 0 chr5 20657811 20657946 -131879313 + B1_Mur2 SINE Alu 1 136 -13 3 742 450 215 21 0 chr5 20658748 20658841 -131878418 + B1_Mur1 SINE Alu 35 129 -20 3 742 727 212 7 20 chr5 20658946 20659095 -131878164 + B1_Mus1 SINE Alu 1 147 -1 3 742 354 202 15 15 chr5 20659494 20659625 -131877634 - RMER17A LTR ERVK -299 452 322 3 742 343 269 36 27 chr5 20659612 20659723 -131877536 - RSINE1 SINE B4 -45 120 9 3 742 585 258 26 7 chr5 20659772 20659924 -131877335 - RSINE1 SINE B4 0 165 11 3 742 289 323 32 0 chr5 20659928 20660021 -131877238 - B1F1 SINE Alu -52 97 2 3 742 752 204 0 33 chr5 20660031 20660183 -131877076 - B1_Mus2 SINE Alu 0 147 1 3 742 4055 66 3 48 chr5 20660405 20660991 -131876268 + MusHAL1 LINE L1 2053 2612 -100 3 742 2451 11 0 0 chr5 20660992 20661261 -131875998 + L1Md_T LINE L1 5318 5586 -297 3 742 8544 34 0 2 chr5 20661261 20662259 -131875000 + L1Md_T LINE L1 5587 6582 0 3 742 761 43 8 8 chr5 20662259 20662376 -131874883 + MusHAL1 LINE L1 2596 2712 0 3 742 646 105 0 37 chr5 20662476 20662585 -131874674 - B2_Mm1a SINE B2 -7 186 82 3 742 444 304 134 48 chr5 20662595 20663034 -131874225 - L1ME2z LINE L1 -65 6379 5903 3 742 1176 48 7 20 chr5 20663037 20663185 -131874074 + B1_Mm SINE Alu 2 147 0 3 742 216 89 35 35 chr5 20663185 20663243 -131874016 + (CAA)n Simple_repeat Simple_repeat 3 60 0 3 742 522 302 153 42 chr5 20663319 20663566 -131873693 - L1ME2z LINE L1 -580 5864 5582 3 742 3626 139 74 15 chr5 20663566 20664217 -131873042 - RMER6C LTR ERVK -1 689 1 3 742 522 302 153 42 chr5 20664217 20664366 -131872893 - L1ME2z LINE L1 -863 5581 5435 3 742 1773 180 27 109 chr5 20664366 20664778 -131872481 - ORR1C1 LTR MaLR 0 378 1 3 742 522 270 94 43 chr5 20664778 20664951 -131872308 - L1ME2z LINE L1 -1010 5434 5233 3 742 488 179 53 0 chr5 20665073 20665168 -131872091 + ID_B1 SINE B4 125 224 0 3 742 423 284 216 13 chr5 20666255 20666477 -131870782 + B4A SINE B4 2 270 -22 3 742 447 95 0 0 chr5 20666477 20666551 -131870708 + (CAGA)n Simple_repeat Simple_repeat 1 74 0 3 742 192 152 0 0 chr5 20666561 20666594 -131870665 + GA-rich Low_complexity Low_complexity 1 33 0 3 742 216 158 0 0 chr5 20667276 20667314 -131869945 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 742 3918 157 81 84 chr5 20667363 20668268 -131868991 - RMER19B LTR ERVK 0 902 1 3 742 323 102 104 54 chr5 20668628 20668706 -131868553 - ORR1C1 LTR MaLR 0 384 308 3 742 4479 154 70 62 chr5 20668690 20669740 -131867519 - ORR1C1-int LTR MaLR -112 1397 339 3 742 1393 233 27 96 chr5 20669810 20670480 -131866779 + RMER20A LTR ERVK 26 603 -24 3 742 1298 177 102 11 chr5 20670503 20670788 -131866471 - Lx5 LINE L1 -1034 6016 5706 3 742 364 223 30 119 chr5 20670788 20670852 -131866407 + MT2B LTR ERVL 106 154 -430 3 742 549 256 0 0 chr5 20670852 20670977 -131866282 + B1_Mus1 SINE Alu 2 126 -22 3 742 6474 158 48 74 chr5 20670993 20671212 -131866047 - Lx5 LINE L1 -481 5683 5460 3 742 3978 125 30 45 chr5 20671212 20671563 -131865696 + RMER17A LTR ERVK 1 354 -397 3 742 849 38 0 0 chr5 20671563 20671668 -131865591 + (TTC)n Simple_repeat Simple_repeat 3 107 0 3 742 3978 125 30 45 chr5 20671668 20672078 -131865181 + RMER17A LTR ERVK 355 751 0 3 742 6474 153 56 54 chr5 20672078 20672114 -131865145 - Lx5 LINE L1 -421 5459 5447 3 742 1098 102 0 0 chr5 20672114 20672261 -131864998 - B1_Mus1 SINE Alu -1 147 1 3 742 6474 153 56 54 chr5 20672261 20673327 -131863932 - Lx5 LINE L1 -434 5446 4336 3 742 288 0 0 0 chr5 20673327 20673359 -131863900 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 742 6474 153 56 54 chr5 20673359 20673378 -131863881 - Lx5 LINE L1 -1545 4335 4320 3 742 578 207 14 29 chr5 20673681 20673820 -131863439 - B1_Mur2 SINE Alu -1 148 12 3 742 323 256 8 0 chr5 20674393 20674510 -131862749 + (TG)n Simple_repeat Simple_repeat 1 118 0 3 742 504 284 83 29 chr5 20674523 20674799 -131862460 - B4A SINE B4 0 292 2 3 742 198 0 0 0 chr5 20675860 20675882 -131861377 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 3 742 522 290 80 13 chr5 20675908 20676132 -131861127 - MTC LTR MaLR -165 256 18 3 742 1641 205 65 8 chr5 20676269 20676652 -131860607 + MTD LTR MaLR 1 405 -14 3 742 180 296 99 0 chr5 20678211 20678282 -131858977 - MIRc SINE MIR -144 124 47 3 742 4561 179 67 72 chr5 20678743 20678847 -131858412 - RMER1A Other Other -12 1018 899 3 742 288 0 0 0 chr5 20678847 20678879 -131858380 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 742 4561 179 67 72 chr5 20678879 20679584 -131857675 - RMER1A Other Other -132 898 195 3 742 468 0 0 0 chr5 20679584 20679636 -131857623 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 742 4561 184 61 63 chr5 20679636 20679873 -131857386 - RMER1A Other Other -604 426 4 3 742 535 261 32 108 chr5 20679874 20680002 -131857257 - B4A SINE B4 -62 230 100 3 742 1154 202 168 43 chr5 20680002 20680395 -131856864 - RMER10A LTR ERVL 0 442 1 3 742 535 261 32 108 chr5 20680395 20680515 -131856744 - B4A SINE B4 -193 99 1 3 742 279 0 0 0 chr5 20680721 20680752 -131856507 + (T)n Simple_repeat Simple_repeat 1 31 0 3 742 396 0 0 0 chr5 20680931 20680975 -131856284 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 742 622 326 71 3 chr5 20682580 20682946 -131854313 - L1MC4 LINE L1 -195 7847 7457 3 742 1093 227 48 56 chr5 20683360 20683790 -131853469 + RLTR20B3 LTR ERVK 86 564 -13 3 742 28 0 0 0 chr5 20684060 20684088 -131853171 + AT_rich Low_complexity Low_complexity 1 28 0 3 742 1667 161 199 79 chr5 20684134 20684872 -131852387 - RMER6C LTR ERVK -5 715 5 3 742 696 24 0 0 chr5 20684877 20684959 -131852300 + (TTCTC)n Simple_repeat Simple_repeat 4 85 0 3 742 580 196 287 16 chr5 20684966 20685072 -131852187 - Lx7 LINE L1 -8 7688 7557 3 742 351 0 0 0 chr5 20685072 20685111 -131852148 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 3 742 580 196 287 16 chr5 20685111 20685258 -131852001 - Lx7 LINE L1 -140 7556 7366 3 742 442 302 105 68 chr5 20685267 20685562 -131851697 + MLT1J LTR MaLR 170 475 -37 3 742 912 105 83 0 chr5 20685712 20685845 -131851414 + B1_Mur3 SINE Alu 5 148 -1 4 742 274 232 29 14 chr5 20686135 20686205 -131851054 - Lx8 LINE L1 -214 7259 7189 4 742 189 0 0 0 chr5 20686224 20686245 -131851014 + (T)n Simple_repeat Simple_repeat 1 21 0 4 742 438 285 81 32 chr5 20686246 20686514 -131850745 - MTD LTR MaLR -55 364 48 4 742 781 54 9 9 chr5 20686543 20686655 -131850604 + (GAAA)n Simple_repeat Simple_repeat 2 113 0 4 742 13822 80 34 20 chr5 20686666 20689228 -131848031 - L1VL4 LINE L1 -726 2833 243 4 742 443 176 39 3 chr5 20689253 20689346 -131847913 - L1VL4 LINE L1 -5993 309 243 4 742 1582 253 178 2 chr5 20689347 20689831 -131847428 - Lx8 LINE L1 -311 7162 6594 4 742 708 191 104 0 chr5 20690795 20690968 -131846291 + URR1B DNA MER1_type 2 192 -33 4 742 315 59 59 0 chr5 20691094 20691145 -131846114 + URR1B DNA MER1_type 172 225 0 4 742 243 291 155 0 chr5 20691282 20691385 -131845874 - PB1D7 SINE Alu -1 119 1 4 742 195 42 0 0 chr5 20692656 20692680 -131844579 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 4 742 210 71 0 0 chr5 20692868 20692896 -131844363 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 4 742 621 0 0 0 chr5 20693066 20693135 -131844124 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 4 742 357 24 0 0 chr5 20693139 20693181 -131844078 + (TCCCC)n Simple_repeat Simple_repeat 5 46 0 4 742 412 190 124 41 chr5 20695433 20695554 -131841705 + RSINE1 SINE B4 3 133 -32 4 742 257 109 22 0 chr5 20695751 20695797 -131841462 + (TATG)n Simple_repeat Simple_repeat 3 49 0 4 742 258 317 57 16 chr5 20696957 20697079 -131840180 - L1ME3A LINE L1 -35 6138 6012 4 742 270 136 0 0 chr5 20697175 20697219 -131840040 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 742 1251 56 0 0 chr5 20697224 20697384 -131839875 + (TTTC)n Simple_repeat Simple_repeat 3 162 0 4 742 397 235 96 19 chr5 20697395 20697499 -131839760 - B1_Mur2 SINE Alu -21 128 17 4 742 381 249 90 65 chr5 20697628 20698022 -131839237 + RLTR15 LTR ERVK 1 356 -3 4 742 231 246 78 189 chr5 20698059 20698265 -131838994 - L1ME3A LINE L1 -488 5685 5503 4 742 238 300 109 0 chr5 20698724 20698834 -131838425 + MER76 LTR ERVL 121 242 -449 4 742 514 200 48 72 chr5 20698998 20699165 -131838094 - RNLTR23 LTR ERVK 0 642 480 4 742 544 295 84 0 chr5 20699525 20699715 -131837544 - B4A SINE B4 -80 212 7 4 742 524 244 87 0 chr5 20700390 20700505 -131836754 - B1_Mur1 SINE Alu 0 149 25 4 742 291 28 0 0 chr5 20700698 20700734 -131836525 + (CAA)n Simple_repeat Simple_repeat 1 36 0 4 742 645 179 27 0 chr5 20700995 20701107 -131836152 + B1_Mur2 SINE Alu 3 117 -32 4 742 351 296 70 23 chr5 20701107 20701123 -131836136 + ID_B1 SINE B4 84 217 -7 4 742 3083 85 2 0 chr5 20701172 20701571 -131835688 - MTB LTR MaLR 0 400 1 4 742 270 0 0 0 chr5 20702207 20702237 -131835022 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 742 297 213 16 0 chr5 20702242 20702303 -131834956 - B1_Mur3 SINE Alu -87 62 1 4 742 1710 117 14 2 chr5 20702304 20702577 -131834682 - L1_Mus3 LINE L1 -327 5829 5544 4 742 7706 82 1 13 chr5 20702551 20704032 -131833227 - L1_Mus2 LINE L1 -7 6559 5099 4 742 7244 86 34 0 chr5 20704012 20705669 -131831590 - L1VL4 LINE L1 -1730 1829 107 4 742 380 240 73 52 chr5 20705805 20705941 -131831318 - MLT1A1 LTR MaLR -9 399 261 4 742 310 299 0 0 chr5 20706445 20706532 -131830727 - L1MD2 LINE L1 -74 6285 6199 4 742 642 220 62 125 chr5 20706754 20706899 -131830360 - B3A SINE B2 -16 182 36 4 742 7985 50 1 4 chr5 20706899 20707876 -131829383 + L1Md_F2 LINE L1 5609 6582 0 4 742 642 220 62 125 chr5 20707876 20707922 -131829337 - B3A SINE B2 -163 35 3 4 742 475 309 109 79 chr5 20708124 20708984 -131828275 - L1MDa LINE L1 -4497 2136 1242 4 742 2002 118 36 46 chr5 20708984 20709313 -131827946 + ORR1A2 LTR MaLR 1 326 -1 4 92 475 327 132 83 chr5 20709313 20709984 -131827275 - L1MDa LINE L1 -5392 1241 510 4 743 288 318 18 0 chr5 20710310 20710420 -131826839 - L1MDa LINE L1 -6486 147 36 4 743 361 262 0 0 chr5 20710968 20711048 -131826211 + ID4 SINE ID 2 81 -2 4 743 378 0 0 0 chr5 20711069 20711111 -131826148 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 743 416 333 45 6 chr5 20711241 20711398 -131825861 + B4A SINE B4 26 188 -104 4 743 306 0 0 0 chr5 20711476 20711510 -131825749 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 743 21 57 0 0 chr5 20711776 20711811 -131825448 + AT_rich Low_complexity Low_complexity 1 35 0 4 743 189 107 0 0 chr5 20711928 20711956 -131825303 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 743 517 246 63 7 chr5 20711965 20712108 -131825151 - B3A SINE B2 -47 151 1 4 743 356 265 88 0 chr5 20712292 20712394 -131824865 - PB1D10 SINE Alu -6 111 1 4 743 261 297 43 11 chr5 20712562 20712654 -131824605 - MIR SINE MIR -8 254 160 4 743 328 290 59 20 chr5 20712749 20712851 -131824408 - MIR SINE MIR -151 111 6 4 743 688 242 60 6 chr5 20714100 20714266 -131822993 + B4 SINE B4 3 177 -115 4 743 5442 35 2 0 chr5 20714470 20715103 -131822156 - L1Md_F2 LINE L1 -1 6581 5948 4 743 225 0 0 0 chr5 20716400 20716425 -131820834 + (TC)n Simple_repeat Simple_repeat 1 25 0 4 743 261 0 0 0 chr5 20716425 20716453 -131820806 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 743 233 276 75 33 chr5 20716568 20716688 -131820571 - LTR16C LTR ERVL -1 488 364 4 743 216 330 32 0 chr5 20716911 20717005 -131820254 - L2 LINE L2 -763 2656 2560 4 743 519 201 0 5 chr5 20717087 20717309 -131819950 + (TG)n Simple_repeat Simple_repeat 1 220 0 4 743 300 292 61 20 chr5 20717313 20717460 -131819799 - L2 LINE L2 -940 2479 2327 4 743 370 269 158 8 chr5 20717499 20717619 -131819640 + ID_B1 SINE B4 79 216 -8 4 743 1168 263 59 27 chr5 20718606 20718981 -131818278 + MTD LTR MaLR 18 404 -15 4 743 461 17 0 17 chr5 20719065 20719124 -131818135 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 4 743 834 301 46 18 chr5 20719277 20719558 -131817701 - B4A SINE B4 -3 289 1 4 743 2170 92 6 0 chr5 20720955 20721272 -131815987 + ORR1A2 LTR MaLR 1 319 -8 4 743 255 365 62 0 chr5 20721961 20722106 -131815153 - Kanga2_a DNA Tc2 -644 244 91 4 743 309 109 0 0 chr5 20723028 20723074 -131814185 + (TGG)n Simple_repeat Simple_repeat 1 46 0 4 743 886 292 76 48 chr5 20723800 20724196 -131813063 - MER82 DNA MER2_type -134 519 113 4 743 657 144 0 0 chr5 20724419 20724537 -131812722 + (TCTCC)n Simple_repeat Simple_repeat 4 121 0 4 743 380 147 82 0 chr5 20724769 20724867 -131812392 - B1_Mur1 SINE Alu -5 144 68 4 743 225 269 86 9 chr5 20724840 20724945 -131812314 - B1F2 SINE Alu -26 123 11 4 743 300 20 0 58 chr5 20727388 20727440 -131809819 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 4 743 246 278 67 31 chr5 20729147 20729340 -131807919 - L1M5 LINE L1 -741 5453 5254 4 743 272 244 197 38 chr5 20729420 20729552 -131807707 - RSINE1 SINE B4 0 165 13 4 743 552 56 0 0 chr5 20729828 20729900 -131807359 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 743 444 139 0 0 chr5 20730541 20730620 -131806639 + (TATG)n Simple_repeat Simple_repeat 4 82 0 4 743 1283 229 3 37 chr5 20730653 20730948 -131806311 - B4 SINE B4 0 292 8 4 743 603 264 123 0 chr5 20731108 20731271 -131805988 - ID_B1 SINE B4 -41 183 1 4 743 24 100 0 0 chr5 20731281 20731361 -131805898 + AT_rich Low_complexity Low_complexity 1 80 0 4 743 861 213 69 0 chr5 20732240 20732442 -131804817 - B3 SINE B2 0 216 1 4 743 401 281 25 111 chr5 20733533 20733777 -131803482 - Lx9 LINE L1 -60 7584 7362 4 743 930 227 39 0 chr5 20734011 20734218 -131803041 - B3 SINE B2 -1 215 1 4 743 184 122 49 0 chr5 20735335 20735376 -131801883 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 743 27 29 0 0 chr5 20735532 20735566 -131801693 + AT_rich Low_complexity Low_complexity 1 34 0 4 743 266 274 36 0 chr5 20735593 20735677 -131801582 - RSINE1 SINE B4 -76 89 3 4 743 3178 136 199 5 chr5 20735827 20736395 -131800864 - RLTR33 LTR ERVK 0 678 1 4 743 1214 42 0 0 chr5 20738124 20738266 -131798993 - B1_Mus2 SINE Alu -4 143 2 4 743 1224 91 0 6 chr5 20738469 20738645 -131798614 + B2_Mm2 SINE B2 1 175 -20 4 743 870 285 103 36 chr5 20739751 20740199 -131797060 - Lx8 LINE L1 -86 7387 6910 4 743 1642 90 0 4 chr5 20740258 20740492 -131796767 - L1_Mus4 LINE L1 -2 6634 6402 4 743 251 261 53 26 chr5 20740566 20740680 -131796579 + B1_Mus1 SINE Alu 31 147 -1 4 743 3056 15 0 0 chr5 20741235 20741572 -131795687 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 743 57308 24 3 9 chr5 20741572 20748083 -131789176 - IAPEz-int LTR ERVK 0 6481 8 4 743 3056 15 0 0 chr5 20748083 20748420 -131788839 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 743 707 254 40 10 chr5 20749167 20749366 -131787893 - LTRIS4 LTR ERV1 -18 489 285 4 743 183 188 0 0 chr5 20749453 20749501 -131787758 + G-rich Low_complexity Low_complexity 1 48 0 4 743 730 177 0 8 chr5 20749701 20749832 -131787427 + B1_Mur3 SINE Alu 14 143 -6 4 743 1405 150 111 118 chr5 20750114 20750255 -131787004 - RMER16 LTR ERVK 0 533 396 4 743 1418 85 11 0 chr5 20750255 20750443 -131786816 - B2_Mm1t SINE B2 0 193 4 4 743 1405 150 111 118 chr5 20750443 20750725 -131786534 - RMER16 LTR ERVK -138 395 113 4 743 1320 150 251 36 chr5 20751078 20751436 -131785823 - RLTR41 LTR ERV1 -11 435 1 4 743 807 318 29 6 chr5 20751540 20751888 -131785371 - RLTR6-int LTR ERV1 -72 7706 7401 4 743 570 15 0 0 chr5 20752345 20752412 -131784847 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 743 422 152 184 49 chr5 20752414 20752587 -131784672 - RLTR41 LTR ERV1 -205 241 1 4 743 214 297 86 21 chr5 20754395 20754488 -131782771 - MIRb SINE MIR -60 208 110 4 743 310 257 60 76 chr5 20754550 20754735 -131782524 - MLT1D LTR MaLR -22 483 302 4 743 2397 111 3 0 chr5 20755363 20755687 -131781572 - ORR1A2 LTR MaLR 0 327 3 4 743 577 336 60 0 chr5 20757190 20757425 -131779834 + Tigger7 DNA MER2_type 40 288 -2203 4 743 231 197 106 76 chr5 20757460 20757526 -131779733 + MT2B2 LTR ERVL 189 256 -328 5 743 615 89 9 47 chr5 20757467 20757573 -131779686 + B1_Mus2 SINE Alu 46 147 0 5 743 194 0 39 0 chr5 20757582 20757608 -131779651 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 743 234 254 167 0 chr5 20757847 20757973 -131779286 - Tigger13a DNA MER2_type -119 652 506 5 743 737 251 176 4 chr5 20758054 20758298 -131778961 - B4A SINE B4 -6 286 1 5 743 198 91 0 0 chr5 20759362 20759395 -131777864 + (T)n Simple_repeat Simple_repeat 1 33 0 5 743 434 220 10 29 chr5 20760914 20761017 -131776242 + PB1D10 SINE Alu 17 117 0 5 743 525 296 7 0 chr5 20761065 20761207 -131776052 - ID_B1 SINE B4 0 224 82 5 743 223 250 11 101 chr5 20761930 20762019 -131775240 - B1F SINE Alu -9 140 60 5 743 200 125 25 0 chr5 20762047 20762087 -131775172 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 743 444 317 104 62 chr5 20762259 20762568 -131774691 - MTEa LTR MaLR 0 379 58 5 743 795 124 36 14 chr5 20762591 20762730 -131774529 + B1_Mur4 SINE Alu 9 150 0 5 743 363 122 11 22 chr5 20762805 20762897 -131774362 + (CAAA)n Simple_repeat Simple_repeat 2 92 0 5 743 713 198 4 0 chr5 20764083 20764314 -131772945 + (CA)n Simple_repeat Simple_repeat 1 232 0 5 743 717 226 62 33 chr5 20765604 20765814 -131771445 + B3 SINE B2 1 216 0 5 743 293 183 79 79 chr5 20766054 20766143 -131771116 + MLT1A LTR MaLR 19 107 -267 5 743 829 221 40 35 chr5 20766408 20766610 -131770649 + B3 SINE B2 1 203 -13 5 743 446 157 10 0 chr5 20766931 20767033 -131770226 + CT-rich Low_complexity Low_complexity 2 104 0 5 743 287 179 18 0 chr5 20767051 20767107 -131770152 - PB1D10 SINE Alu -60 57 1 5 743 237 263 222 0 chr5 20768739 20768910 -131768349 - B3 SINE B2 -6 210 2 5 743 609 203 104 15 chr5 20768941 20769076 -131768183 + B1_Mus2 SINE Alu 1 147 0 5 743 24 32 0 0 chr5 20769310 20769341 -131767918 + AT_rich Low_complexity Low_complexity 1 31 0 5 743 410 296 110 16 chr5 20770078 20770260 -131766999 - RMER15 LTR ERVL 0 575 377 5 743 405 0 0 0 chr5 20770532 20770577 -131766682 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 5 743 327 248 136 42 chr5 20770593 20770711 -131766548 - RSINE1 SINE B4 -35 130 2 5 743 1317 61 0 0 chr5 20770773 20770953 -131766306 + (GGA)n Simple_repeat Simple_repeat 1 180 0 5 743 1241 233 38 77 chr5 20771629 20771847 -131765412 - MTD LTR MaLR 0 419 224 5 743 189 0 0 0 chr5 20771847 20771868 -131765391 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 5 743 1241 233 38 77 chr5 20771868 20772067 -131765192 - MTD LTR MaLR -196 223 19 5 743 194 0 39 0 chr5 20772068 20772094 -131765165 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 743 570 238 0 0 chr5 20772151 20772791 -131764468 + CT-rich Low_complexity Low_complexity 1 640 0 5 743 1048 259 143 27 chr5 20772815 20773256 -131764003 - Lx8 LINE L1 -59 7414 6923 5 743 333 200 7 211 chr5 20773253 20773405 -131763854 - Lx8 LINE L1 -937 6536 6416 5 743 22 0 0 0 chr5 20773538 20773560 -131763699 + AT_rich Low_complexity Low_complexity 1 22 0 5 743 243 0 0 0 chr5 20775684 20775711 -131761548 + (T)n Simple_repeat Simple_repeat 1 27 0 5 743 339 275 138 0 chr5 20776100 20776238 -131761021 + L1MD2 LINE L1 6203 6359 0 5 743 293 308 29 9 chr5 20779074 20779179 -131758080 - B4A SINE B4 -173 119 13 5 743 23 0 0 0 chr5 20779721 20779744 -131757515 + AT_rich Low_complexity Low_complexity 1 23 0 5 743 361 227 53 92 chr5 20779751 20779882 -131757377 - ID_B1 SINE B4 -5 219 94 5 743 222 275 29 0 chr5 20780166 20780235 -131757024 + GA-rich Low_complexity Low_complexity 5 75 0 5 743 9570 70 45 18 chr5 20780780 20781338 -131755921 - L1_Mus1 LINE L1 -737 5830 5256 5 743 1221 112 31 16 chr5 20781338 20781529 -131755730 - B2_Mm2 SINE B2 0 195 2 5 743 9570 77 18 29 chr5 20781529 20781692 -131755567 - L1_Mus1 LINE L1 -628 5255 5112 5 743 1113 88 0 7 chr5 20781692 20781840 -131755419 - B1_Mus1 SINE Alu 0 148 2 5 743 9570 77 18 29 chr5 20781840 20782306 -131754953 - L1_Mus1 LINE L1 -772 5111 4650 5 743 3210 36 20 15 chr5 20782306 20782697 -131754562 + MTA_Mm LTR MaLR 4 396 0 5 743 9570 77 18 29 chr5 20782697 20782899 -131754360 - L1_Mus1 LINE L1 -1234 4649 4437 5 743 5855 50 1 14 chr5 20782899 20783633 -131753626 + L1_Mus1 LINE L1 5843 6567 0 5 743 291 255 16 171 chr5 20784114 20784237 -131753022 - B4A SINE B4 -17 275 172 5 743 255 227 15 15 chr5 20784328 20784395 -131752864 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 743 417 183 423 0 chr5 20784550 20784681 -131752578 - B3 SINE B2 -27 189 3 5 743 1063 270 137 73 chr5 20787802 20788034 -131749225 - L1MB1 LINE L1 0 6168 5911 5 743 264 30 0 0 chr5 20788034 20788067 -131749192 - tRNA-Thr-ACA tRNA tRNA -37 39 7 5 743 1063 270 137 73 chr5 20788067 20788650 -131748609 - L1MB1 LINE L1 0 5910 5259 5 743 290 257 143 50 chr5 20788793 20788912 -131748347 - ID_B1 SINE B4 -15 209 80 5 743 360 0 0 0 chr5 20788979 20789019 -131748240 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 743 284 105 0 34 chr5 20789148 20789207 -131748052 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 5 743 691 180 0 0 chr5 20789847 20789969 -131747290 + MTC LTR MaLR 1 122 -299 5 743 4339 52 2 7 chr5 20789973 20790510 -131746749 - L1_Mus2 LINE L1 0 6566 6033 5 743 7887 66 1 5 chr5 20790510 20791669 -131745590 + L1_Mus2 LINE L1 4847 6003 -563 5 743 1596 162 13 22 chr5 20791670 20791985 -131745274 + MTC LTR MaLR 110 421 0 5 743 327 315 115 14 chr5 20793663 20793811 -131743448 + MER45A DNA Tip100 1 163 -15 5 743 433 0 35 0 chr5 20796281 20796338 -131740921 + (TC)n Simple_repeat Simple_repeat 1 59 0 5 743 501 84 0 0 chr5 20797936 20798007 -131739252 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 743 574 290 150 6 chr5 20800697 20801030 -131736229 - MTD LTR MaLR -38 381 1 5 743 352 181 562 0 chr5 20804068 20804212 -131733047 + URR1B DNA MER1_type 1 225 0 5 743 679 169 153 89 chr5 20804416 20804618 -131732641 + B3 SINE B2 2 216 0 5 743 431 278 9 0 chr5 20805508 20805623 -131731636 - PB1D7 SINE Alu 0 120 5 5 743 401 278 8 57 chr5 20806076 20806198 -131731061 + PB1D10 SINE Alu 2 117 0 5 743 4208 7 0 0 chr5 20806286 20806747 -131730512 + L1Md_A LINE L1 6122 6582 0 5 743 338 61 20 0 chr5 20806812 20806861 -131730398 + (AGGGGG)n Simple_repeat Simple_repeat 6 55 0 5 743 927 112 232 11 chr5 20808519 20808700 -131728559 + URR1A DNA MER1_type 5 225 -1 5 743 218 305 37 0 chr5 20809720 20809802 -131727457 - MIR SINE MIR -75 133 49 5 743 285 75 0 0 chr5 20810159 20810199 -131727060 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 743 458 243 40 74 chr5 20810245 20810538 -131726721 - RLTR20C LTR ERVK -231 303 1 5 743 433 292 0 28 chr5 20811488 20811597 -131725662 + PB1D10 SINE Alu 1 106 -11 5 743 230 179 18 0 chr5 20812102 20812158 -131725101 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 743 268 241 0 0 chr5 20813788 20813842 -131723417 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 743 366 132 0 0 chr5 20814183 20814259 -131723000 + (T)n Simple_repeat Simple_repeat 1 76 0 5 743 23 0 0 0 chr5 20814793 20814816 -131722443 + AT_rich Low_complexity Low_complexity 1 23 0 5 743 186 118 0 0 chr5 20815101 20815135 -131722124 + (A)n Simple_repeat Simple_repeat 1 34 0 5 743 22 0 0 0 chr5 20815198 20815220 -131722039 + AT_rich Low_complexity Low_complexity 1 22 0 5 743 183 42 0 0 chr5 20816123 20816147 -131721112 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 743 898 110 66 0 chr5 20816147 20816272 -131720987 - B1_Mus2 SINE Alu -12 135 2 5 743 213 39 0 0 chr5 20816816 20816842 -131720417 + (CAAAG)n Simple_repeat Simple_repeat 5 30 0 5 743 2516 256 130 44 chr5 20817453 20818582 -131718677 + Lx9 LINE L1 5837 7162 -482 5 743 927 270 93 9 chr5 20819725 20820046 -131717213 + MER90 LTR ERV1 79 426 -149 5 743 288 305 69 29 chr5 20820985 20821231 -131716028 + L1MEg LINE L1 1684 1939 -4145 5 743 466 198 16 90 chr5 20821402 20821524 -131715735 - B3 SINE B2 -102 114 2 5 743 432 0 0 0 chr5 20822362 20822410 -131714849 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 5 743 251 270 32 0 chr5 20823057 20823120 -131714139 + ID4 SINE ID 19 83 0 5 743 822 253 109 12 chr5 20823124 20823372 -131713887 + B4 SINE B4 1 272 -20 5 743 1049 265 54 36 chr5 20824177 20824564 -131712695 + MTD LTR MaLR 1 394 -25 5 743 491 161 25 8 chr5 20824564 20824683 -131712576 + GA-rich Low_complexity Low_complexity 5 125 0 5 743 393 289 86 0 chr5 20826244 20826396 -131710863 - Arthur1A DNA Tip100 -2 175 11 5 743 23 86 0 0 chr5 20826508 20826566 -131710693 + AT_rich Low_complexity Low_complexity 1 58 0 5 743 883 93 23 23 chr5 20827845 20828020 -131709239 + (TCCCC)n Simple_repeat Simple_repeat 4 178 0 5 743 463 237 94 12 chr5 20828064 20828235 -131709024 + ORR1D1 LTR MaLR 158 342 -32 5 743 222 302 74 61 chr5 20829156 20829304 -131707955 + L2 LINE L2 2704 2853 -566 5 743 291 222 13 40 chr5 20830208 20830283 -131706976 + Lx4B LINE L1 6700 6772 -286 5 743 847 169 39 11 chr5 20830284 20830464 -131706795 + Lx4B LINE L1 6866 7050 -8 5 743 573 64 0 0 chr5 20830471 20830549 -131706710 + (CAT)n Simple_repeat Simple_repeat 1 78 0 5 743 705 183 0 0 chr5 20830549 20830664 -131706595 - B1_Mur2 SINE Alu -32 117 3 5 743 394 249 133 16 chr5 20830995 20831183 -131706076 - L1MD2 LINE L1 -5113 1527 1318 5 743 616 314 116 24 chr5 20831493 20831787 -131705472 - L1MD2 LINE L1 -5481 1066 746 5 743 273 283 0 0 chr5 20831876 20831936 -131705323 + L1MCa LINE L1 529 588 -5920 5 743 229 326 45 15 chr5 20832026 20832160 -131705099 + L1MCa LINE L1 660 797 -5711 5 743 239 21 20 59 chr5 20833033 20833084 -131704175 + (CAAAAA)n Simple_repeat Simple_repeat 1 49 0 5 743 2095 17 21 0 chr5 20833229 20833464 -131703795 - L1Md_F3 LINE L1 -1 6583 6344 5 743 239 151 91 36 chr5 20834168 20834223 -131703036 + PB1D9 SINE Alu 2 59 -61 5 743 348 161 0 0 chr5 20834309 20834371 -131702888 + (CAGAGA)n Simple_repeat Simple_repeat 1 62 0 5 743 372 216 13 0 chr5 20834371 20834467 -131702792 + PB1D9 SINE Alu 42 142 -7 6 743 203 217 0 21 chr5 20834471 20834518 -131702741 + GA-rich Low_complexity Low_complexity 2 47 0 6 743 196 290 124 39 chr5 20835820 20835949 -131701310 - L2 LINE L2 -575 2844 2705 6 743 298 56 54 36 chr5 20836979 20837035 -131700224 + (TTTTC)n Simple_repeat Simple_repeat 2 58 0 6 743 185 280 0 74 chr5 20837544 20837598 -131699661 + L3 LINE CR1 4303 4352 -137 6 743 225 311 33 11 chr5 20837642 20837733 -131699526 - L2a LINE L2 -7 3419 3327 6 743 250 305 115 32 chr5 20838613 20838769 -131698490 + LTR16E1 LTR ERVL 370 538 0 6 743 266 345 122 3 chr5 20839131 20839273 -131697986 + MIRm SINE MIR 7 161 -107 6 743 2261 211 15 100 chr5 20839423 20839942 -131697317 + L1Md_F LINE L1 467 904 -5730 6 743 3405 56 2 10 chr5 20839942 20840341 -131696918 - MTA_Mm LTR MaLR 0 396 1 6 92 2261 161 7 24 chr5 20840341 20840642 -131696617 + L1Md_F LINE L1 901 1197 -5419 6 744 35534 64 5 8 chr5 20840623 20845846 -131691413 + L1Md_F3 LINE L1 381 5586 -297 6 744 8719 30 19 0 chr5 20845846 20846872 -131690387 + L1Md_F3 LINE L1 5587 6584 0 6 744 19657 100 2 3 chr5 20846917 20849073 -131688186 + L1Md_F LINE L1 1174 3335 -2548 6 744 3638 23 5 0 chr5 20849073 20849467 -131687792 + MTA_Mm LTR MaLR 1 396 0 6 744 9754 34 4 1 chr5 20849467 20850562 -131686697 + MTA_Mm-int LTR MaLR 1 1098 0 6 744 3638 23 5 0 chr5 20850562 20850956 -131686303 + MTA_Mm LTR MaLR 1 396 0 6 744 19657 155 33 6 chr5 20850956 20851982 -131685277 + L1Md_F LINE L1 3336 4596 -1544 6 744 294 256 37 0 chr5 20852028 20852110 -131685149 + L1MB7 LINE L1 6031 6115 -69 6 744 920 129 13 58 chr5 20852245 20852401 -131684858 + B1_Mur4 SINE Alu 1 149 -1 6 744 903 80 0 0 chr5 20852760 20852885 -131684374 + (TTCC)n Simple_repeat Simple_repeat 3 127 0 6 744 725 270 144 70 chr5 20853396 20853667 -131683592 + B4A SINE B4 2 292 0 6 744 227 345 68 17 chr5 20854577 20854695 -131682564 + MIRm SINE MIR 51 174 -102 6 744 1037 270 167 9 chr5 20854698 20855045 -131682214 + MTD LTR MaLR 18 419 0 6 744 314 294 102 69 chr5 20855268 20855542 -131681717 - L1MEc LINE L1 -5101 1299 1017 6 744 12597 60 17 1 chr5 20855581 20857243 -131680016 + MusHAL1 LINE L1 592 2279 -433 6 744 252 0 0 0 chr5 20857514 20857542 -131679717 + (A)n Simple_repeat Simple_repeat 1 28 0 6 744 3191 69 30 0 chr5 20857542 20857978 -131679281 + MusHAL1 LINE L1 2264 2712 0 6 744 1026 295 120 56 chr5 20858365 20858832 -131678427 + MLT1D LTR MaLR 1 497 -8 6 744 362 209 36 10 chr5 20858933 20859033 -131678226 + PB1D10 SINE Alu 14 120 0 6 744 380 223 9 28 chr5 20859851 20859957 -131677302 - L1M4 LINE L1 -1712 4434 4331 6 744 210 47 22 65 chr5 20860700 20860746 -131676513 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 6 744 277 220 0 32 chr5 20861064 20861158 -131676101 - L1M4 LINE L1 -1706 4440 4350 6 744 1431 65 2 0 chr5 20861700 20862180 -131675079 + (TG)n Simple_repeat Simple_repeat 1 481 0 6 744 22 0 0 0 chr5 20862501 20862523 -131674736 + AT_rich Low_complexity Low_complexity 1 22 0 6 744 21 36 0 0 chr5 20862840 20862868 -131674391 + AT_rich Low_complexity Low_complexity 1 28 0 6 744 981 81 0 0 chr5 20863170 20863306 -131673953 + (TG)n Simple_repeat Simple_repeat 2 137 0 6 744 995 241 19 140 chr5 20863310 20863618 -131673641 - B4A SINE B4 -19 273 3 6 744 383 197 0 39 chr5 20864023 20864150 -131673109 + C-rich Low_complexity Low_complexity 3 124 0 6 744 28 48 0 0 chr5 20864302 20864344 -131672915 + AT_rich Low_complexity Low_complexity 1 42 0 6 744 187 368 29 0 chr5 20864762 20864830 -131672429 + L2b LINE L2 3256 3325 -50 6 744 200 422 18 36 chr5 20865029 20865196 -131672063 - MIRb SINE MIR -29 239 76 6 744 197 0 0 67 chr5 20866281 20866311 -131670948 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 6 744 1090 84 7 27 chr5 20866312 20866459 -131670800 - B1_Mus1 SINE Alu -2 146 3 6 744 755 182 271 0 chr5 20866726 20866896 -131670363 - B3 SINE B2 0 216 1 6 744 25 0 0 0 chr5 20867566 20867591 -131669668 + GC_rich Low_complexity Low_complexity 1 25 0 6 744 352 229 41 20 chr5 20867591 20867689 -131669570 + L1MA8 LINE L1 5710 5809 -491 6 744 236 156 0 22 chr5 20867755 20867801 -131669458 - LTR52 LTR ERVL -48 373 329 6 744 283 268 112 35 chr5 20867825 20867941 -131669318 + L1MA8 LINE L1 5973 6097 -194 6 744 3700 158 36 10 chr5 20868019 20868703 -131668556 + MYSERV16_I-int LTR ERVK 1621 2322 -4 6 744 337 294 9 38 chr5 20868703 20868809 -131668450 + RLTR20B2 LTR ERVK 69 171 -389 6 744 1163 252 47 70 chr5 20868809 20868937 -131668322 + L1MA5 LINE L1 5514 5627 -673 6 744 996 261 126 49 chr5 20868937 20869287 -131667972 + MTE2b LTR MaLR 3 379 0 6 744 1163 252 47 70 chr5 20869287 20869688 -131667571 + L1MA5 LINE L1 5628 6031 -269 6 744 607 265 158 37 chr5 20870079 20870428 -131666831 + L1MB4 LINE L1 5790 6180 0 6 744 237 65 0 0 chr5 20870495 20870526 -131666733 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 744 303 237 197 0 chr5 20870602 20870678 -131666581 + RSINE1 SINE B4 2 92 -73 6 744 2636 247 74 29 chr5 20870679 20871462 -131665797 + Lx7 LINE L1 6626 7443 -253 6 744 2338 132 6 6 chr5 20871576 20871935 -131665324 - ORR1B1 LTR MaLR -12 382 24 6 744 228 89 17 51 chr5 20873131 20873190 -131664069 + T-rich Low_complexity Low_complexity 3 59 0 6 744 787 231 14 0 chr5 20873201 20873348 -131663911 - B1_Mur2 SINE Alu 0 149 1 6 744 276 279 22 44 chr5 20873710 20873800 -131663459 + B4A SINE B4 79 166 -126 6 744 544 204 0 10 chr5 20873732 20873836 -131663423 + PB1D9 SINE Alu 18 120 0 6 744 561 241 64 2 chr5 20873883 20874014 -131663245 + B3A SINE B2 31 171 -45 6 744 822 54 0 0 chr5 20874014 20874126 -131663133 + (GA)n Simple_repeat Simple_repeat 2 113 0 6 744 465 273 71 42 chr5 20874126 20874162 -131663097 + B3 SINE B2 172 203 -13 6 744 214 202 67 11 chr5 20875349 20875439 -131661820 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 744 1350 142 56 5 chr5 20875642 20875840 -131661419 + B3 SINE B2 3 210 -6 6 744 521 223 9 37 chr5 20876353 20876460 -131660799 - PB1D10 SINE Alu -8 109 6 6 744 216 130 0 0 chr5 20876787 20876833 -131660426 + (TGG)n Simple_repeat Simple_repeat 1 46 0 6 744 504 252 36 0 chr5 20877574 20877685 -131659574 + PB1D10 SINE Alu 1 115 -2 6 744 727 27 45 0 chr5 20879581 20879691 -131657568 + (TC)n Simple_repeat Simple_repeat 2 116 0 6 744 269 357 67 27 chr5 20880558 20880768 -131656491 + MIRb SINE MIR 8 230 -38 6 744 197 216 0 0 chr5 20881949 20881986 -131655273 + L3 LINE CR1 4083 4119 -370 6 744 32 26 0 0 chr5 20882042 20882081 -131655178 + AT_rich Low_complexity Low_complexity 1 39 0 6 744 21 0 0 0 chr5 20883215 20883236 -131654023 + AT_rich Low_complexity Low_complexity 1 21 0 6 744 423 0 0 0 chr5 20884623 20884670 -131652589 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 744 259 330 129 76 chr5 20884976 20885823 -131651436 - L2 LINE L2 -337 3082 2191 6 744 1230 258 90 3 chr5 20886186 20886688 -131650571 + Lx5 LINE L1 6123 6886 -574 6 744 627 187 0 0 chr5 20887075 20887246 -131650013 + (CA)n Simple_repeat Simple_repeat 2 172 0 6 744 876 112 0 48 chr5 20887274 20887600 -131649659 + CT-rich Low_complexity Low_complexity 1 310 0 6 744 696 270 60 0 chr5 20888248 20888295 -131648964 - B3 SINE B2 0 216 158 6 744 465 19 0 0 chr5 20888295 20888349 -131648910 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 744 696 270 60 0 chr5 20888349 20888501 -131648758 - B3 SINE B2 -59 157 6 6 744 201 279 15 0 chr5 20889985 20890053 -131647206 + (TGG)n Simple_repeat Simple_repeat 1 69 0 6 744 967 250 34 53 chr5 20891167 20891488 -131645771 + MER74A LTR ERVL 218 532 -26 6 744 261 0 0 0 chr5 20891506 20891535 -131645724 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 744 895 242 46 10 chr5 20891535 20891731 -131645528 - ID_B1 SINE B4 -19 205 3 6 744 207 100 0 0 chr5 20891820 20891850 -131645409 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 744 505 172 30 23 chr5 20891850 20891981 -131645278 + Lx9 LINE L1 7513 7644 0 6 744 304 181 21 108 chr5 20892100 20892193 -131645066 + L1M2 LINE L1 5617 5701 -611 6 744 594 256 98 20 chr5 20892241 20892444 -131644815 + L1MB3 LINE L1 5822 6040 -143 6 744 2670 176 24 6 chr5 20892457 20892959 -131644300 + RLTR11A2 LTR ERVK 1 511 -16 6 744 322 182 143 57 chr5 20893492 20893597 -131643662 - RLTR21 LTR ERVK -121 1451 1338 6 744 870 102 0 0 chr5 20893599 20893726 -131643533 + (TA)n Simple_repeat Simple_repeat 2 128 0 6 744 4051 164 42 29 chr5 20893727 20893799 -131643460 - RMER12 LTR ERVK -486 836 770 6 744 417 95 0 0 chr5 20893799 20893862 -131643397 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 744 4051 164 42 29 chr5 20893862 20894614 -131642645 - RMER12 LTR ERVK -553 769 1 6 744 213 65 0 0 chr5 20895197 20895228 -131642031 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 744 223 241 93 0 chr5 20895268 20895322 -131641937 - ID4_ SINE ID -13 70 12 6 744 257 309 75 0 chr5 20895335 20895429 -131641830 - B1F2 SINE Alu -47 102 2 6 744 315 0 0 0 chr5 20895538 20895573 -131641686 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 744 200 111 28 0 chr5 20896177 20896213 -131641046 + (CAG)n Simple_repeat Simple_repeat 2 38 0 6 744 23 0 0 0 chr5 20896835 20896858 -131640401 + AT_rich Low_complexity Low_complexity 1 23 0 6 744 300 53 0 0 chr5 20896951 20896989 -131640270 + (CTG)n Simple_repeat Simple_repeat 2 39 0 6 744 330 67 0 0 chr5 20896991 20897036 -131640223 + (ATG)n Simple_repeat Simple_repeat 2 46 0 6 744 299 296 0 39 chr5 20897956 20898031 -131639228 + BC1_Mm scRNA scRNA 1 73 -79 6 744 198 0 0 0 chr5 20898031 20898053 -131639206 + (G)n Simple_repeat Simple_repeat 1 22 0 6 744 299 296 0 39 chr5 20898053 20898079 -131639180 + BC1_Mm scRNA scRNA 74 97 -55 6 744 405 0 0 0 chr5 20898161 20898206 -131639053 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 744 638 250 72 12 chr5 20898240 20898406 -131638853 + B3A SINE B2 5 180 -18 6 744 7455 190 30 17 chr5 20898622 20900337 -131636922 + Lx6 LINE L1 5118 6855 -605 6 744 369 0 0 0 chr5 20900337 20900378 -131636881 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 744 7455 219 41 25 chr5 20900378 20900795 -131636464 + Lx6 LINE L1 6856 7287 -173 6 744 277 301 96 20 chr5 20901671 20901868 -131635391 + L1ME3 LINE L1 5851 6062 -100 7 744 21 0 0 0 chr5 20903045 20903066 -131634193 + AT_rich Low_complexity Low_complexity 1 21 0 7 744 216 97 0 0 chr5 20903100 20903131 -131634128 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 7 744 750 250 26 0 chr5 20903138 20903294 -131633965 + MTE2b LTR MaLR 125 284 -95 7 744 437 311 25 0 chr5 20903390 20903512 -131633747 + PB1 SINE Alu 1 125 -2 7 744 229 225 0 0 chr5 20903538 20903578 -131633681 + ID4_ SINE ID 26 65 -18 7 744 221 315 0 0 chr5 20903578 20903592 -131633667 + ID SINE ID 27 80 -144 7 744 292 320 75 0 chr5 20903606 20903753 -131633506 + L1MC4 LINE L1 7129 7286 -756 7 744 1785 219 68 93 chr5 20903792 20904276 -131632983 + RMER19C LTR ERVK 138 609 -2 7 744 246 237 0 48 chr5 20904427 20904489 -131632770 - L1_Mur3 LINE L1 -747 5133 5075 7 744 1609 133 150 0 chr5 20904513 20904806 -131632453 + RMER1B Other Other 544 880 -186 7 744 519 168 8 50 chr5 20904821 20904835 -131632424 + RMER1A Other Other 905 917 -113 7 744 185 0 40 0 chr5 20904835 20904860 -131632399 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 7 744 547 138 10 13 chr5 20904860 20904964 -131632295 + RMER1B Other Other 918 1055 -11 7 744 1858 88 0 0 chr5 20905153 20905403 -131631856 + ORR1A3 LTR MaLR 77 326 0 7 744 195 139 0 0 chr5 20905562 20905598 -131631661 + (TCC)n Simple_repeat Simple_repeat 3 38 0 7 744 1127 227 178 26 chr5 20906059 20906521 -131630738 - MER45R DNA Tip100 -47 1534 1003 7 744 3788 151 70 25 chr5 20906559 20907113 -131630146 + L1_Mur2 LINE L1 563 1129 -5957 7 744 2130 112 43 30 chr5 20907113 20907418 -131629841 + RLTR27 LTR ERVK 1 309 0 7 744 10506 102 21 17 chr5 20907418 20909061 -131628198 + L1_Mur2 LINE L1 1130 2838 -3039 7 744 1506 102 0 5 chr5 20909056 20909273 -131627986 + L1_Mur2 LINE L1 3249 3464 -2413 7 744 2303 152 11 24 chr5 20909283 20909653 -131627606 - ORR1B2 LTR MaLR 0 367 3 7 744 24 0 0 0 chr5 20909680 20909704 -131627555 + AT_rich Low_complexity Low_complexity 1 24 0 7 744 35906 78 8 14 chr5 20909763 20916190 -131621069 - L1Md_F2 LINE L1 -3 6579 196 7 744 507 212 0 20 chr5 20916458 20916559 -131620700 - PB1D9 SINE Alu -3 117 19 7 744 297 186 42 14 chr5 20916662 20916733 -131620526 + ORR1D1 LTR MaLR 301 373 -1 7 744 2439 97 18 18 chr5 20917463 20917800 -131619459 - Lx3_Mus LINE L1 0 7009 6673 7 744 279 0 0 0 chr5 20918653 20918684 -131618575 + (TC)n Simple_repeat Simple_repeat 1 31 0 7 744 345 62 0 0 chr5 20918684 20918731 -131618528 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 744 217 207 24 0 chr5 20918733 20918815 -131618444 + GA-rich Low_complexity Low_complexity 5 88 0 7 744 192 179 0 0 chr5 20918858 20918897 -131618362 + GA-rich Low_complexity Low_complexity 4 42 0 7 744 253 338 25 0 chr5 20919441 20919521 -131617738 - MIRb SINE MIR -113 155 74 7 744 773 263 21 31 chr5 20919593 20919785 -131617474 + B3A SINE B2 5 194 -4 7 744 219 167 0 0 chr5 20919862 20919904 -131617355 + CT-rich Low_complexity Low_complexity 3 44 0 7 744 331 199 0 82 chr5 20920640 20920810 -131616449 + (TAAA)n Simple_repeat Simple_repeat 2 157 0 7 744 10773 73 21 9 chr5 20921237 20923740 -131613519 + Lx3A LINE L1 4453 6979 -2 7 744 459 275 86 29 chr5 20923901 20924144 -131613115 - L1MEf LINE L1 -5481 719 463 7 744 751 228 195 27 chr5 20925272 20925457 -131611802 + B3 SINE B2 1 216 0 7 744 332 335 24 30 chr5 20925466 20925635 -131611624 + L1MEd LINE L1 958 1125 -5011 7 744 940 171 48 27 chr5 20925657 20925843 -131611416 + B2_Mm2 SINE B2 3 192 -3 7 744 465 286 178 21 chr5 20925889 20926317 -131610942 + L1MEd LINE L1 3571 4065 -2081 7 744 29 60 0 0 chr5 20927035 20927085 -131610174 + AT_rich Low_complexity Low_complexity 1 50 0 7 744 1921 103 242 25 chr5 20927143 20927337 -131609922 + RMER10B LTR ERVL 1 200 -198 7 744 324 0 0 0 chr5 20927337 20927373 -131609886 + (TC)n Simple_repeat Simple_repeat 2 37 0 7 744 692 12 12 0 chr5 20927373 20927457 -131609802 + (TG)n Simple_repeat Simple_repeat 1 86 0 7 744 1921 103 242 25 chr5 20927457 20927588 -131609671 + RMER10B LTR ERVL 201 397 -1 7 744 269 333 64 16 chr5 20927680 20927805 -131609454 + MIRc SINE MIR 104 234 -34 7 744 316 316 25 34 chr5 20929231 20929349 -131607910 - PB1D7 SINE Alu -3 117 1 7 744 423 0 0 0 chr5 20929616 20929663 -131607596 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 744 214 301 109 64 chr5 20929869 20929979 -131607280 - MIRc SINE MIR -98 170 56 7 744 1235 75 0 0 chr5 20930003 20930150 -131607109 - B1_Mus2 SINE Alu 0 147 1 7 744 206 0 0 65 chr5 20931658 20931689 -131605570 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 744 253 303 33 22 chr5 20931984 20932075 -131605184 - MIRb SINE MIR -67 201 110 7 744 1203 189 184 55 chr5 20932811 20933159 -131604100 + MTD LTR MaLR 1 393 -26 7 744 731 250 21 0 chr5 20933284 20933428 -131603831 - B1_Mus1 SINE Alu 0 148 2 7 744 7862 57 13 7 chr5 20933606 20934955 -131602304 - L1_Mus2 LINE L1 0 6566 5212 7 744 364 285 28 28 chr5 20936485 20936626 -131600633 - Looper DNA PiggyBac -617 941 801 7 744 2494 54 0 0 chr5 20936626 20936924 -131600335 + L1Md_F2 LINE L1 5289 5586 -297 7 744 8186 65 9 2 chr5 20936924 20937903 -131599356 + L1Md_F2 LINE L1 5587 6572 -10 7 744 261 240 13 0 chr5 20937923 20937998 -131599261 - Looper DNA PiggyBac -742 816 741 7 744 251 274 147 7 chr5 20938000 20938136 -131599123 - Looper DNA PiggyBac -1372 186 32 7 744 1131 243 109 18 chr5 20938152 20938503 -131598756 + MTD LTR MaLR 14 379 0 7 744 225 304 58 44 chr5 20938787 20938917 -131598342 - MIR SINE MIR -114 154 22 7 744 231 267 138 88 chr5 20939944 20940104 -131597155 + Lx8 LINE L1 7299 7466 -7 7 744 586 208 92 20 chr5 20940392 20940407 -131596852 - RSINE1 SINE B4 -2 163 144 7 744 389 20 20 0 chr5 20940407 20940457 -131596802 + (GA)n Simple_repeat Simple_repeat 1 51 0 7 744 586 208 92 20 chr5 20940457 20940593 -131596666 - RSINE1 SINE B4 -22 143 1 7 744 341 257 13 13 chr5 20940932 20941007 -131596252 - B4A SINE B4 0 292 218 7 744 201 108 0 0 chr5 20941022 20941059 -131596200 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 7 744 1133 101 0 0 chr5 20941059 20941207 -131596052 - B1_Mus1 SINE Alu 0 148 1 7 744 467 243 196 7 chr5 20941207 20941360 -131595899 - B4A SINE B4 -65 227 46 7 744 380 214 174 15 chr5 20941622 20941764 -131595495 + MIR SINE MIR 6 170 -98 7 744 244 191 88 0 chr5 20943922 20943990 -131593269 + L1M5 LINE L1 4251 4324 -1822 7 744 233 211 100 50 chr5 20944031 20944131 -131593128 + L1M5 LINE L1 4406 4510 -1636 7 744 1144 139 106 24 chr5 20944239 20944446 -131592813 - URR1A DNA MER1_type -2 224 1 7 744 183 283 57 0 chr5 20944473 20944526 -131592733 + L2b LINE L2 3210 3265 -110 7 744 21 0 0 0 chr5 20944962 20944983 -131592276 + AT_rich Low_complexity Low_complexity 1 21 0 7 744 186 43 0 0 chr5 20946193 20946216 -131591043 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 744 1054 316 91 10 chr5 20946621 20947037 -131590222 - LTR16A LTR ERVL 0 451 2 7 744 284 325 25 66 chr5 20947043 20947165 -131590094 - L2c LINE L2 0 3387 3271 7 744 3183 254 70 39 chr5 20947695 20948995 -131588264 - RMER1C Other Other 0 1342 161 7 744 244 285 39 31 chr5 20950344 20950471 -131586788 + RMER17C LTR ERVK 181 308 -102 7 744 246 195 146 22 chr5 20951128 20951217 -131586042 - Lx9 LINE L1 -13 7631 7532 7 744 817 324 168 7 chr5 20951592 20951996 -131585263 - MLT1F2 LTR MaLR -83 477 9 7 744 318 106 0 0 chr5 20953418 20953465 -131583794 + (TATG)n Simple_repeat Simple_repeat 4 50 0 7 744 7664 160 48 6 chr5 20953879 20955342 -131581917 - Lx5 LINE L1 -1111 5939 4405 7 744 737 235 46 51 chr5 20955340 20955698 -131581561 + Lx6 LINE L1 5922 6372 -686 7 744 1214 311 92 8 chr5 20955679 20956153 -131581106 + Lx5 LINE L1 6503 6975 -75 7 744 8396 43 0 0 chr5 20956555 20957609 -131579650 + L1_Mus1 LINE L1 5510 6563 -4 7 744 567 328 47 10 chr5 20958235 20958534 -131578725 - Lx9 LINE L1 -127 7517 7208 7 744 21 0 0 0 chr5 20958642 20958663 -131578596 + AT_rich Low_complexity Low_complexity 1 21 0 7 744 3725 28 136 0 chr5 20959018 20959452 -131577807 - MT2_Mm LTR ERVL 0 493 1 7 744 2115 72 0 77 chr5 20959696 20959996 -131577263 + L1_Mus2 LINE L1 6289 6565 -1 7 744 1690 92 12 8 chr5 20960729 20960969 -131576290 + L1_Mus3 LINE L1 6393 6633 -5 7 744 1227 68 7 0 chr5 20960973 20961119 -131576140 + B1_Mus1 SINE Alu 2 148 0 7 744 1111 201 9 29 chr5 20961162 20961372 -131575887 + B3 SINE B2 1 206 -10 7 744 1044 192 231 23 chr5 20962693 20962992 -131574267 - ORR1D2 LTR MaLR 0 370 10 7 744 435 256 190 78 chr5 20963775 20964033 -131573226 - B4A SINE B4 0 292 6 7 744 21 57 0 0 chr5 20964913 20964948 -131572311 + AT_rich Low_complexity Low_complexity 1 35 0 7 744 27739 130 16 4 chr5 20965284 20971513 -131565746 + L1_Mus4 LINE L1 380 6636 0 7 745 294 234 19 9 chr5 20972554 20972662 -131564597 + (TA)n Simple_repeat Simple_repeat 1 109 0 7 745 562 195 92 58 chr5 20973498 20973672 -131563587 + Lx2B LINE L1 6818 6997 -3 7 745 25 51 0 0 chr5 20973690 20973729 -131563530 + AT_rich Low_complexity Low_complexity 1 39 0 7 745 356 298 119 158 chr5 20974700 20975003 -131562256 + B4 SINE B4 2 292 0 7 745 382 310 134 35 chr5 20975498 20975752 -131561507 + L1MEc LINE L1 44 322 -6078 7 745 5479 229 189 24 chr5 20975806 20978144 -131559115 - L1_Rod LINE L1 -1946 3901 1162 7 745 240 318 34 0 chr5 20978163 20978251 -131559008 - L1_Rod LINE L1 -6560 1048 958 7 745 7511 195 63 27 chr5 20978264 20980360 -131556899 - Lx6 LINE L1 -27 7433 5249 7 745 719 150 92 14 chr5 20980356 20980498 -131556761 - Lx6 LINE L1 -1363 4517 4365 7 745 901 136 6 49 chr5 20980512 20980674 -131556585 - Lx6 LINE L1 -4073 1807 1653 7 745 3835 160 36 33 chr5 20981138 20982243 -131555016 - Lx6 LINE L1 -4225 1655 549 7 745 462 294 73 11 chr5 20983255 20983434 -131553825 + L1MEc LINE L1 622 811 -5589 7 745 250 81 0 0 chr5 20983539 20983576 -131553683 + B4A SINE B4 107 143 -149 7 745 341 254 194 17 chr5 20983594 20983774 -131553485 + L1MEc LINE L1 911 1122 -5278 7 745 276 244 44 44 chr5 20985298 20985388 -131551871 + L1ME1 LINE L1 5909 5998 -181 7 745 1337 286 89 44 chr5 20986448 20986999 -131550260 - MER44C DNA MER2_type -25 708 133 7 745 322 352 66 62 chr5 20987089 20987377 -131549882 - MLT1E1 LTR MaLR -92 562 274 7 745 288 0 0 0 chr5 20988217 20988249 -131549010 + (TTCCC)n Simple_repeat Simple_repeat 2 33 0 7 745 606 252 121 36 chr5 20989400 20989565 -131547694 + B3A SINE B2 2 180 -18 7 745 306 261 22 11 chr5 20990533 20990622 -131546637 + L1M3 LINE L1 3706 3795 -2348 8 745 467 258 124 10 chr5 20990621 20990826 -131546433 + L1M3 LINE L1 3958 4156 -1691 8 745 229 227 30 15 chr5 20990899 20990966 -131546293 + L1M3 LINE L1 4404 4471 -1672 8 745 23 0 0 0 chr5 20992527 20992550 -131544709 + AT_rich Low_complexity Low_complexity 1 23 0 8 745 332 284 58 151 chr5 20993684 20993876 -131543383 + MLT1H2 LTR MaLR 270 470 -79 8 745 701 206 89 53 chr5 20993876 20994066 -131543193 + B3A SINE B2 2 198 0 8 745 332 284 31 164 chr5 20994066 20994150 -131543109 + MLT1H2 LTR MaLR 425 549 0 8 745 226 106 0 41 chr5 20994151 20994200 -131543059 + (TA)n Simple_repeat Simple_repeat 2 48 0 8 745 237 250 36 0 chr5 20994201 20994285 -131542974 + L1MCa LINE L1 1901 1987 -4521 8 745 341 309 84 31 chr5 20994440 20994727 -131542532 - HAL1 LINE L1 -1754 753 452 8 745 392 123 0 0 chr5 20994727 20994784 -131542475 + MER20 DNA MER1_type 19 75 -144 8 745 491 278 94 19 chr5 20995652 20995865 -131541394 + LTR37B LTR ERV1 198 426 -42 8 745 709 96 287 0 chr5 20995872 20995987 -131541272 + B1_Mur4 SINE Alu 3 150 0 8 745 191 36 36 0 chr5 20996391 20996419 -131540840 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 745 269 319 30 24 chr5 20996912 20997076 -131540183 + Lx7 LINE L1 5705 5869 -1827 8 745 1897 119 26 70 chr5 20997155 20997497 -131539762 + ORR1A4 LTR MaLR 3 329 0 8 745 560 229 132 0 chr5 20997660 20997804 -131539455 + B3A SINE B2 5 167 -31 8 745 414 0 0 0 chr5 20997805 20997851 -131539408 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 745 327 226 75 0 chr5 20997936 20998029 -131539230 + L1MA7 LINE L1 6132 6231 -60 8 745 219 363 74 0 chr5 20998304 20998439 -131538820 + L3 LINE CR1 4288 4432 -57 8 745 656 218 25 31 chr5 20998734 20998895 -131538364 + RSINE1 SINE B4 2 161 -4 8 745 216 0 0 0 chr5 20999821 20999845 -131537414 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 745 264 122 0 0 chr5 21000395 21000436 -131536823 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 1 745 393 113 0 0 chr5 21000575 21000637 -131536622 - RMER6B LTR ERVK -1 460 399 2 745 1729 124 93 77 chr5 21000727 21001103 -131536156 - RMER6B LTR ERVK -73 388 7 2 745 387 0 0 0 chr5 21001586 21001629 -131535630 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 745 207 0 0 0 chr5 21001642 21001665 -131535594 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 745 204 111 0 0 chr5 21003481 21003517 -131533742 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 745 194 271 46 23 chr5 21004795 21004882 -131532377 + MIR3 SINE MIR 108 196 -12 6 745 261 118 0 0 chr5 21005256 21005307 -131531952 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 745 241 294 103 36 chr5 21005843 21006099 -131531160 - MTEb LTR MaLR -3 376 85 8 745 471 100 0 0 chr5 21007067 21007137 -131530122 + (TG)n Simple_repeat Simple_repeat 1 70 0 9 745 572 303 47 17 chr5 21008206 21008441 -131528818 + L1MB8 LINE L1 5436 5677 -507 1 745 1070 89 0 0 chr5 21008449 21008606 -131528653 + B2_Mm2 SINE B2 2 158 -37 1 745 195 42 0 0 chr5 21008606 21008630 -131528629 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 745 674 290 119 25 chr5 21008634 21009027 -131528232 + L1MB8 LINE L1 5662 6102 -76 1 745 486 0 0 0 chr5 21010059 21010113 -131527146 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 745 316 331 14 34 chr5 21010770 21010917 -131526342 - RMER15 LTR ERVL -85 490 347 1 745 3040 217 53 8 chr5 21011554 21012177 -131525082 + Lx6 LINE L1 6806 7456 -4 1 745 627 302 84 25 chr5 21013178 21013453 -131523806 - B4 SINE B4 0 292 2 1 745 274 221 28 42 chr5 21013966 21014037 -131523222 - ID4_ SINE ID -11 72 3 1 745 256 253 83 10 chr5 21014475 21014571 -131522688 - PB1D10 SINE Alu -2 118 16 1 745 25 31 0 0 chr5 21014646 21014678 -131522581 + AT_rich Low_complexity Low_complexity 1 32 0 1 745 2039 100 3 0 chr5 21016125 21016415 -131520844 - ORR1A2 LTR MaLR -36 291 1 2 745 313 278 93 58 chr5 21016672 21016844 -131520415 - MIRc SINE MIR -71 197 20 2 745 449 271 192 0 chr5 21016949 21017152 -131520107 - B4A SINE B4 -8 284 43 2 745 243 0 0 0 chr5 21017158 21017185 -131520074 + (TC)n Simple_repeat Simple_repeat 1 27 0 2 745 2780 184 30 162 chr5 21017558 21018329 -131518930 - RMER1C Other Other -3 1339 671 2 745 23 0 0 0 chr5 21018341 21018364 -131518895 + AT_rich Low_complexity Low_complexity 1 23 0 2 745 534 253 20 7 chr5 21018364 21018511 -131518748 - B1F SINE Alu 0 149 1 2 745 1221 155 14 0 chr5 21018694 21018907 -131518352 + RMER6A LTR ERVK 541 756 0 2 745 308 324 14 28 chr5 21020775 21020795 -131516464 + ID_B1 SINE B4 82 181 -43 2 745 337 302 43 8 chr5 21020795 21020912 -131516347 + B1F SINE Alu 21 141 -8 2 745 279 179 35 23 chr5 21021011 21021097 -131516162 + GA-rich Low_complexity Low_complexity 2 88 0 3 745 180 280 100 27 chr5 21021570 21021680 -131515579 - L2 LINE L2 -371 3048 2931 3 745 624 153 143 8 chr5 21022092 21022211 -131515048 + B1_Mus2 SINE Alu 1 135 -12 3 745 234 0 0 0 chr5 21022212 21022238 -131515021 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 3 745 1402 174 11 39 chr5 21022278 21022314 -131514945 - ORR1C1 LTR MaLR 0 378 348 3 745 3439 45 0 0 chr5 21022314 21022710 -131514549 + MTA_Mm LTR MaLR 1 396 0 3 745 1402 174 11 39 chr5 21022710 21022954 -131514305 - ORR1C1 LTR MaLR -31 347 106 3 745 873 130 75 0 chr5 21022954 21023100 -131514159 - RMER1A Other Other -241 789 633 3 745 236 33 0 0 chr5 21023100 21023130 -131514129 - ORR1C1 LTR MaLR -354 30 1 3 745 264 288 14 0 chr5 21023211 21023284 -131513975 - B3 SINE B2 -142 74 1 3 745 1492 198 112 23 chr5 21023486 21023833 -131513426 + ORR1C1 LTR MaLR 1 378 0 3 745 595 186 6 6 chr5 21025864 21026026 -131511233 + G-rich Low_complexity Low_complexity 1 162 0 3 745 553 220 158 18 chr5 21026282 21026453 -131510806 + B3 SINE B2 1 195 -21 4 745 650 225 42 7 chr5 21028194 21028337 -131508922 - B1F SINE Alu -1 148 1 4 745 267 318 12 12 chr5 21030472 21030558 -131506701 + RSINE1 SINE B4 23 108 -57 4 745 28 29 0 0 chr5 21030677 21030712 -131506547 + AT_rich Low_complexity Low_complexity 1 35 0 4 745 1252 119 27 5 chr5 21030850 21031035 -131506224 - B2_Mm2 SINE B2 -5 190 2 4 745 317 267 165 51 chr5 21031821 21031979 -131505280 - ID_B1 SINE B4 -21 203 28 4 745 745 92 0 0 chr5 21032095 21032204 -131505055 + ORR1A4 LTR MaLR 221 329 0 4 745 239 225 53 63 chr5 21032337 21032417 -131504842 - MLT2C1 LTR ERVL 0 559 481 4 745 646 130 37 0 chr5 21032417 21032525 -131504734 + B1_Mur2 SINE Alu 2 113 -36 4 745 215 31 0 30 chr5 21032527 21032560 -131504699 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 745 398 303 18 122 chr5 21032570 21032792 -131504467 - MLT2C1 LTR ERVL -57 340 142 4 745 813 137 7 46 chr5 21036168 21036321 -131500938 - B1_Mur3 SINE Alu 0 149 3 5 745 745 253 98 10 chr5 21036342 21036637 -131500622 + MER63D DNA AcHobo 48 368 -693 5 745 1305 198 86 22 chr5 21036668 21036983 -131500276 + ORR1D1 LTR MaLR 40 374 0 5 745 1778 195 58 80 chr5 21036983 21037460 -131499799 + ORR1D1-int LTR MaLR 97 562 -808 5 745 360 0 0 0 chr5 21037503 21037543 -131499716 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 5 745 228 67 0 0 chr5 21037543 21037573 -131499686 + (GGAGA)n Simple_repeat Simple_repeat 2 31 0 5 745 225 360 58 22 chr5 21038136 21038275 -131498984 - L2a LINE L2 -2 3373 3230 5 745 488 286 160 24 chr5 21038784 21039281 -131497978 - L2a LINE L2 -291 3135 2569 5 745 806 297 46 68 chr5 21039281 21039675 -131497584 - MLT1B LTR MaLR -4 386 2 5 745 488 299 161 35 chr5 21039675 21039741 -131497518 - L2a LINE L2 -851 2568 2498 5 745 263 311 117 0 chr5 21039796 21039899 -131497360 + PB1D10 SINE Alu 1 115 -2 5 745 284 233 17 25 chr5 21039955 21040103 -131497156 + (TA)n Simple_repeat Simple_repeat 1 146 0 5 745 244 318 19 0 chr5 21040387 21040494 -131496765 + L1ME5 LINE L1 6086 6194 0 5 745 280 279 56 24 chr5 21040960 21041085 -131496174 + L1M5 LINE L1 5580 5708 -465 6 745 222 256 0 0 chr5 21041129 21041207 -131496052 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 745 778 290 42 84 chr5 21041399 21041757 -131495502 - ORR1E LTR MaLR -9 350 8 6 745 1487 244 109 8 chr5 21042228 21042703 -131494556 + RMER5 LTR ERV1 1 523 -11 6 745 2847 95 16 0 chr5 21042856 21043244 -131494015 - ORR1B1 LTR MaLR 0 394 1 6 745 7271 95 42 7 chr5 21043308 21044786 -131492473 - Lx LINE L1 -4 6650 5121 6 745 23 54 0 0 chr5 21045025 21045062 -131492197 + AT_rich Low_complexity Low_complexity 1 37 0 6 745 377 260 37 28 chr5 21045073 21045180 -131492079 + RSINE1 SINE B4 11 118 -47 6 745 360 0 0 0 chr5 21045182 21045222 -131492037 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 745 207 0 0 0 chr5 21045277 21045300 -131491959 + (CAAGG)n Simple_repeat Simple_repeat 4 26 0 6 745 2149 143 48 38 chr5 21045805 21045868 -131491391 + MTC LTR MaLR 18 79 -342 7 745 1072 79 29 0 chr5 21045868 21046008 -131491251 + B1_Mus2 SINE Alu 3 146 -1 7 745 2149 143 48 38 chr5 21046008 21046344 -131490915 + MTC LTR MaLR 80 421 0 7 745 417 353 6 17 chr5 21046716 21046892 -131490367 + (TG)n Simple_repeat Simple_repeat 1 174 0 7 745 315 122 0 0 chr5 21046911 21046960 -131490299 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 745 633 226 69 134 chr5 21046963 21047254 -131490005 - B4 SINE B4 -19 273 2 7 745 242 215 36 60 chr5 21047381 21047465 -131489794 - MER102c DNA MER1_type -95 236 155 7 745 492 18 0 0 chr5 21047521 21047578 -131489681 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 745 249 33 0 0 chr5 21047689 21047719 -131489540 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 745 307 48 0 0 chr5 21047719 21047754 -131489505 - HAL1-3A_ME LINE L1 -845 2013 1979 7 745 347 333 7 0 chr5 21047757 21047892 -131489367 + (TG)n Simple_repeat Simple_repeat 1 136 0 7 745 539 243 98 119 chr5 21048061 21048346 -131488913 - MER67D LTR ERV1 -216 298 20 7 745 752 165 17 17 chr5 21050940 21051113 -131486146 + CT-rich Low_complexity Low_complexity 2 174 0 8 745 322 317 0 0 chr5 21051596 21051700 -131485559 + (TG)n Simple_repeat Simple_repeat 2 105 0 8 745 678 251 128 33 chr5 21051733 21051976 -131485283 - B4 SINE B4 -25 267 2 8 745 504 271 76 7 chr5 21052255 21052400 -131484859 - RSINE1 SINE B4 0 165 11 8 745 556 250 69 63 chr5 21052475 21052650 -131484609 + B3A SINE B2 1 176 -22 8 745 333 129 0 0 chr5 21052652 21052722 -131484537 + (CAGA)n Simple_repeat Simple_repeat 1 70 0 8 745 432 264 28 21 chr5 21053165 21053308 -131483951 + RSINE1 SINE B4 6 149 -16 8 745 1764 122 81 0 chr5 21053633 21053928 -131483331 + ORR1A2 LTR MaLR 1 319 -8 8 745 463 311 16 0 chr5 21054216 21054338 -131482921 + B1F SINE Alu 8 131 -18 8 745 306 194 0 0 chr5 21054343 21054410 -131482849 + GA-rich Low_complexity Low_complexity 2 68 0 8 745 22 56 0 0 chr5 21054478 21054514 -131482745 + AT_rich Low_complexity Low_complexity 1 36 0 9 745 567 168 48 55 chr5 21054560 21054663 -131482596 + B1_Mus1 SINE Alu 5 110 -38 9 745 1357 133 353 4 chr5 21054663 21054935 -131482324 - ORR1B2 LTR MaLR 0 367 1 9 745 567 168 48 55 chr5 21054935 21054976 -131482283 + B1_Mus1 SINE Alu 111 148 0 9 745 440 221 19 19 chr5 21055125 21055231 -131482028 + PB1D10 SINE Alu 10 115 -2 9 745 806 321 125 51 chr5 21056049 21056713 -131480546 - MER63C DNA AcHobo -85 845 133 9 745 230 139 0 44 chr5 21057849 21057894 -131479365 + ID_B1 SINE B4 173 215 -9 9 745 647 241 29 0 chr5 21058741 21058878 -131478381 + B1F1 SINE Alu 8 148 -1 9 745 371 291 90 38 chr5 21060835 21061046 -131476213 + L1MB8 LINE L1 5958 6179 -5 9 745 331 179 115 0 chr5 21061807 21061885 -131475374 + B1_Mus2 SINE Alu 1 87 -60 9 745 618 14 0 0 chr5 21061891 21061962 -131475297 + (GA)n Simple_repeat Simple_repeat 2 72 0 9 745 881 278 74 30 chr5 21063065 21063336 -131473923 - B4A SINE B4 -2 290 8 1 745 447 275 100 12 chr5 21063351 21063601 -131473658 - L1ME2z LINE L1 0 6444 6173 1 745 234 0 0 0 chr5 21063611 21063637 -131473622 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 745 855 156 0 7 chr5 21063642 21063754 -131473505 - B1_Mus1 SINE Alu -7 141 30 1 745 2775 56 0 0 chr5 21063754 21064094 -131473165 - L1Md_T LINE L1 -2 6580 6241 1 745 855 156 0 7 chr5 21064094 21064123 -131473136 - B1_Mus1 SINE Alu -119 29 1 1 745 494 234 80 7 chr5 21064627 21064765 -131472494 + ID_B1 SINE B4 28 175 -49 1 745 352 238 59 0 chr5 21064685 21064786 -131472473 + PB1D10 SINE Alu 11 117 0 1 745 414 132 0 0 chr5 21065231 21065307 -131471952 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 745 619 268 92 0 chr5 21067291 21067336 -131469923 + ID SINE ID 22 81 -143 1 745 434 294 27 40 chr5 21067336 21067485 -131469774 + B1F SINE Alu 1 147 -2 1 745 240 35 0 0 chr5 21067487 21067516 -131469743 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 745 329 208 0 40 chr5 21067545 21067620 -131469639 + ID_B1 SINE B4 145 216 -8 1 745 413 266 109 13 chr5 21067638 21067794 -131469465 + B3A SINE B2 7 177 -21 1 745 1242 28 0 0 chr5 21068327 21068469 -131468790 + B1_Mm SINE Alu 1 142 -5 1 745 185 0 0 39 chr5 21069118 21069144 -131468115 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 1 745 500 194 37 9 chr5 21069657 21069766 -131467493 + B1_Mur2 SINE Alu 33 144 -5 1 745 545 297 112 27 chr5 21070185 21070479 -131466780 - L1MA5 LINE L1 -4 6296 5978 1 745 1185 75 0 0 chr5 21070840 21070987 -131466272 + B1_Mus1 SINE Alu 2 148 0 1 745 596 81 11 0 chr5 21071064 21071151 -131466108 + (TA)n Simple_repeat Simple_repeat 2 89 0 1 745 297 0 0 0 chr5 21071151 21071183 -131466076 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 745 349 231 0 0 chr5 21072994 21073072 -131464187 + MIR SINE MIR 84 161 -101 1 745 1047 238 33 22 chr5 21073231 21073502 -131463757 + B4 SINE B4 1 274 -18 1 745 1208 61 0 0 chr5 21074256 21074403 -131462856 + B1_Mus1 SINE Alu 2 148 0 1 745 364 293 257 8 chr5 21074437 21074702 -131462557 + MER44A DNA MER2_type 1 331 -8 1 745 1070 268 115 14 chr5 21075218 21075566 -131461693 - MTD LTR MaLR -36 383 1 1 745 409 269 117 56 chr5 21076512 21076709 -131460550 - MER2 DNA MER2_type -123 222 14 1 745 765 298 127 0 chr5 21076945 21077197 -131460062 + B4A SINE B4 9 292 0 1 745 241 161 54 0 chr5 21077198 21077254 -131460005 + (CATA)n Simple_repeat Simple_repeat 4 62 0 1 745 26 30 0 0 chr5 21077664 21077697 -131459562 + AT_rich Low_complexity Low_complexity 1 33 0 1 745 758 300 36 0 chr5 21077787 21078067 -131459192 - B4A SINE B4 -2 290 1 1 745 225 0 0 0 chr5 21078580 21078605 -131458654 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 745 183 80 0 0 chr5 21078752 21078777 -131458482 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 1 745 298 229 33 0 chr5 21079969 21080030 -131457229 - LSU-rRNA_Hsa rRNA rRNA -1341 3694 3632 1 745 970 291 57 38 chr5 21080184 21080609 -131456650 - MER67C LTR ERV1 -34 677 245 1 745 712 22 0 0 chr5 21081265 21081356 -131455903 + BC1_Mm scRNA scRNA 1 91 -61 1 745 333 252 87 0 chr5 21081514 21081617 -131455642 + PB1D10 SINE Alu 2 113 -4 1 745 188 161 0 47 chr5 21082065 21082150 -131455109 + (CAGA)n Simple_repeat Simple_repeat 3 83 0 1 745 437 314 58 14 chr5 21082721 21082928 -131454331 - MIRb SINE MIR 0 268 53 1 745 1172 182 62 43 chr5 21083801 21084105 -131453154 + RLTR20C LTR ERVK 1 310 -224 1 745 380 224 207 0 chr5 21084099 21084154 -131453105 + RLTR20C LTR ERVK 416 472 -106 1 745 387 0 0 0 chr5 21084154 21084197 -131453062 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 745 380 224 207 0 chr5 21084197 21084257 -131453002 + RLTR20C LTR ERVK 473 554 -24 1 745 395 264 51 63 chr5 21084490 21084648 -131452611 + MYSERV16_I-int LTR ERVK 212 367 -2475 1 745 1548 193 45 24 chr5 21085242 21085641 -131451618 + MYSERV16_I-int LTR ERVK 1 290 -2036 1 745 1156 61 0 13 chr5 21085644 21085793 -131451466 + B1_Mus2 SINE Alu 1 147 0 1 745 268 350 0 14 chr5 21085986 21086131 -131451128 + L1M5 LINE L1 5727 5869 -255 1 745 1039 70 7 27 chr5 21086199 21086346 -131450913 + B1_Mus2 SINE Alu 2 145 -2 1 745 3117 50 2 20 chr5 21086460 21086864 -131450395 - L1_Mus1 LINE L1 -1 6566 6170 1 745 2586 168 30 51 chr5 21087144 21087709 -131449550 + RLTR31_Mur LTR ERVK 1 553 0 1 745 240 278 97 0 chr5 21088128 21088200 -131449059 - ID4 SINE ID -1 82 4 1 745 192 242 15 75 chr5 21088745 21088812 -131448447 + MIR SINE MIR 6 68 -194 1 745 432 292 21 81 chr5 21089686 21089872 -131447387 - MER5A DNA MER1_type -1 188 14 1 745 879 234 49 0 chr5 21090235 21090440 -131446819 + B3 SINE B2 2 216 0 1 745 649 146 36 0 chr5 21090490 21090600 -131446659 - B1_Mur2 SINE Alu -10 139 26 1 745 243 0 0 0 chr5 21091174 21091201 -131446058 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 745 209 125 25 0 chr5 21091258 21091298 -131445961 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1 745 1309 27 0 0 chr5 21091304 21091452 -131445807 - B1_Mus1 SINE Alu 0 148 1 1 745 372 221 188 15 chr5 21092711 21092844 -131444415 + B3A SINE B2 7 162 -36 1 745 300 207 0 0 chr5 21093071 21093129 -131444130 + Lx8 LINE L1 6776 6833 -640 1 745 480 261 161 107 chr5 21093133 21093229 -131444030 + RLTR12B LTR ERVK 12 109 -419 1 745 2620 70 45 0 chr5 21093229 21093584 -131443675 - L1_Mus3 LINE L1 -12 6626 6256 1 745 480 261 161 107 chr5 21093584 21093964 -131443295 + RLTR12B LTR ERVK 110 514 -14 1 745 760 325 125 39 chr5 21093966 21094564 -131442695 + Lx8 LINE L1 6823 7472 -1 1 745 465 222 62 36 chr5 21094777 21094889 -131442370 - PB1D10 SINE Alu 0 117 3 1 745 232 208 19 0 chr5 21095195 21095248 -131442011 - LTR68 LTR ERV1 -1 739 686 1 745 1343 90 17 0 chr5 21095286 21095464 -131441795 + B2_Mm2 SINE B2 1 181 -14 1 745 523 67 0 0 chr5 21095496 21095571 -131441688 - B2_Mm2 SINE B2 -120 75 1 1 745 26 30 0 0 chr5 21095571 21095604 -131441655 + AT_rich Low_complexity Low_complexity 1 33 0 1 745 262 261 114 0 chr5 21095616 21095704 -131441555 - LTR68 LTR ERV1 -104 636 539 1 745 180 176 0 0 chr5 21095803 21095837 -131441422 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1 745 526 301 51 0 chr5 21095962 21096138 -131441121 - MLT1D LTR MaLR -300 205 21 1 745 674 279 162 34 chr5 21096559 21097125 -131440134 + L1M4 LINE L1 4539 5177 -969 1 745 432 0 0 0 chr5 21097202 21097250 -131440009 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 745 637 356 30 11 chr5 21097272 21097327 -131439932 - B4A SINE B4 -20 272 217 1 745 273 119 0 0 chr5 21097327 21097369 -131439890 + (CTTG)n Simple_repeat Simple_repeat 2 43 0 1 745 637 356 30 11 chr5 21097369 21097580 -131439679 - B4A SINE B4 -76 216 2 1 745 213 143 24 0 chr5 21099121 21099177 -131438082 + (CACCC)n Simple_repeat Simple_repeat 1 57 0 1 745 251 216 40 26 chr5 21099445 21099521 -131437738 - MTC LTR MaLR -71 348 272 1 745 253 221 37 61 chr5 21099514 21099596 -131437663 - MTC LTR MaLR -339 82 3 1 745 1115 261 90 36 chr5 21100556 21100977 -131436282 + ERVL-B4-int LTR ERVL 4460 4903 -811 1 745 651 281 147 11 chr5 21100990 21101263 -131435996 + ERVL-B4-int LTR ERVL 4999 5308 -449 1 745 195 42 0 0 chr5 21101264 21101288 -131435971 + (TAG)n Simple_repeat Simple_repeat 1 24 0 1 745 970 123 82 0 chr5 21101298 21101468 -131435791 - MTC LTR MaLR -217 204 21 1 745 260 140 19 57 chr5 21101490 21101543 -131435716 - B1_Mur1 SINE Alu 0 149 99 1 745 588 220 49 7 chr5 21102009 21102151 -131435108 + RSINE1 SINE B4 3 150 -15 1 746 260 228 0 0 chr5 21102995 21103052 -131434207 - ID_B1 SINE B4 -1 223 167 1 746 495 276 73 76 chr5 21103110 21103412 -131433847 + RLTR17 LTR ERVK 125 425 -267 1 746 394 129 0 28 chr5 21103772 21103844 -131433415 - URR1B DNA MER1_type -52 173 104 1 746 22 0 0 0 chr5 21104003 21104025 -131433234 + AT_rich Low_complexity Low_complexity 1 22 0 1 746 22 35 0 0 chr5 21105424 21105453 -131431806 + AT_rich Low_complexity Low_complexity 1 29 0 1 746 240 35 0 0 chr5 21105738 21105767 -131431492 + (T)n Simple_repeat Simple_repeat 1 29 0 1 746 990 47 0 0 chr5 21105767 21105896 -131431363 - B1_Mm SINE Alu 0 147 19 1 746 332 217 49 12 chr5 21106102 21106265 -131430994 + (TG)n Simple_repeat Simple_repeat 1 169 0 1 746 263 236 48 7 chr5 21106332 21106477 -131430782 + (TG)n Simple_repeat Simple_repeat 1 151 0 1 746 407 190 51 0 chr5 21106671 21106750 -131430509 - URR1B DNA MER1_type -125 100 18 1 746 483 256 55 16 chr5 21106716 21106843 -131430416 - ID_B1 SINE B4 -11 213 82 1 746 233 302 47 16 chr5 21107400 21107464 -131429795 + RSINE1 SINE B4 82 147 -18 1 746 3010 35 0 0 chr5 21109379 21109725 -131427534 - ORR1A1 LTR MaLR 0 346 1 1 746 4023 158 148 8 chr5 21110783 21111574 -131425685 + RMER19B LTR ERVK 1 902 0 1 746 616 218 15 8 chr5 21111600 21111734 -131425525 - RSINE1 SINE B4 -29 136 2 1 746 1209 152 238 0 chr5 21112467 21112769 -131424490 - MTB_Mm LTR MaLR -29 378 5 1 746 1963 134 6 38 chr5 21113118 21113458 -131423801 - ORR1A4 LTR MaLR 0 329 1 1 746 335 259 86 35 chr5 21113463 21113554 -131423705 + B4A SINE B4 171 269 -23 1 746 228 122 0 0 chr5 21113554 21113595 -131423664 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 746 335 259 86 35 chr5 21113595 21113619 -131423640 + B4A SINE B4 270 291 -1 1 746 730 213 112 54 chr5 21114034 21114257 -131423002 + RMER10A LTR ERVL 2 237 -205 1 746 384 144 21 108 chr5 21115445 21115538 -131421721 - B1F SINE Alu 0 149 65 1 746 246 226 0 0 chr5 21115538 21115591 -131421668 - B1F SINE Alu -27 122 70 1 746 494 237 76 0 chr5 21115591 21115709 -131421550 - B1_Mur1 SINE Alu -22 127 1 1 746 1743 188 60 35 chr5 21116095 21116464 -131420795 + ORR1C1 LTR MaLR 1 378 0 1 746 200 35 35 0 chr5 21116464 21116493 -131420766 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 746 743 263 90 11 chr5 21116669 21117068 -131420191 + L1M2 LINE L1 5164 5598 -693 1 746 1381 46 81 0 chr5 21117413 21117586 -131419673 - B2_Mm1a SINE B2 -6 187 1 2 746 280 262 143 75 chr5 21117595 21117756 -131419503 + RLTR12B LTR ERVK 127 298 -230 2 746 314 315 62 16 chr5 21117901 21118030 -131419229 - B4A SINE B4 -156 136 2 2 746 531 211 43 9 chr5 21118115 21118230 -131419029 + PB1D9 SINE Alu 1 119 -1 2 746 884 155 7 34 chr5 21118247 21118394 -131418865 + B1_Mm SINE Alu 5 147 0 2 746 330 266 146 46 chr5 21118650 21118780 -131418479 - B1F SINE Alu -6 143 1 2 746 4897 59 0 2 chr5 21118896 21119505 -131417754 + L1_Mus1 LINE L1 5960 6567 0 2 746 234 0 0 0 chr5 21119542 21119568 -131417691 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 746 32 0 0 0 chr5 21120622 21120654 -131416605 + AT_rich Low_complexity Low_complexity 1 32 0 2 746 1378 198 4 4 chr5 21121617 21121860 -131415399 + RodERV21-int LTR ERV1 3924 4166 -825 2 746 2441 165 30 36 chr5 21121977 21122443 -131414816 + RodERV21-int LTR ERV1 4370 4832 -159 2 746 285 289 0 0 chr5 21122450 21122533 -131414726 + RMER4B LTR ERVK 359 441 -144 2 746 414 194 240 29 chr5 21122690 21122865 -131414394 + RMER21B LTR ERV1 356 567 -275 2 746 22 56 0 0 chr5 21123310 21123346 -131413913 + AT_rich Low_complexity Low_complexity 1 36 0 2 746 189 0 0 0 chr5 21124030 21124051 -131413208 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 2 746 668 222 18 53 chr5 21124745 21124916 -131412343 - B3 SINE B2 0 216 52 2 746 338 250 54 0 chr5 21125478 21125570 -131411689 + PB1D10 SINE Alu 11 107 -10 2 746 189 121 0 0 chr5 21126156 21126189 -131411070 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 2 746 363 240 80 0 chr5 21126190 21126290 -131410969 - PB1D10 SINE Alu -1 116 9 2 746 805 150 56 14 chr5 21126897 21127039 -131410220 + B1_Mur1 SINE Alu 2 149 0 2 746 649 189 79 7 chr5 21127378 21127517 -131409742 + B1F2 SINE Alu 1 149 0 2 746 509 95 0 0 chr5 21127520 21127594 -131409665 + B1_Mus2 SINE Alu 1 74 -73 2 746 934 257 239 41 chr5 21127741 21128155 -131409104 - Lx8 LINE L1 -5 7468 6973 2 746 448 331 81 54 chr5 21128266 21128451 -131408808 + ID_B1 SINE B4 2 191 -33 2 746 1433 75 5 11 chr5 21128452 21128642 -131408617 + B2_Mm1a SINE B2 2 190 -3 2 746 192 97 0 0 chr5 21128644 21128675 -131408584 + (A)n Simple_repeat Simple_repeat 1 31 0 2 746 215 121 0 147 chr5 21128794 21128836 -131408423 + A-rich Low_complexity Low_complexity 1 34 0 2 746 1171 61 14 0 chr5 21128836 21128984 -131408275 + B1_Mur4 SINE Alu 1 150 0 2 746 215 121 0 147 chr5 21128984 21129009 -131408250 + A-rich Low_complexity Low_complexity 35 58 0 2 746 794 242 114 38 chr5 21129475 21129818 -131407441 - L1MA6 LINE L1 -162 6138 5770 2 746 495 87 0 0 chr5 21129891 21129960 -131407299 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 746 4969 112 43 36 chr5 21129961 21130843 -131406416 - RMER12 LTR ERVK -434 888 1 2 746 1749 148 54 6 chr5 21130843 21131174 -131406085 + ORR1C2 LTR MaLR 17 363 -21 2 746 387 41 0 0 chr5 21131174 21131223 -131406036 + ORR1C2 LTR MaLR 336 384 0 2 746 1097 165 32 5 chr5 21131223 21131442 -131405817 - MTC LTR MaLR -196 225 1 2 746 345 285 80 7 chr5 21132133 21132271 -131404988 - RMER15 LTR ERVL -22 553 406 2 746 234 0 0 0 chr5 21132883 21132909 -131404350 + (T)n Simple_repeat Simple_repeat 1 26 0 2 746 796 52 8 25 chr5 21132923 21133041 -131404218 - B1_Mm SINE Alu 0 147 32 2 746 452 285 25 80 chr5 21133077 21133352 -131403907 - L1M3e LINE L1 -6764 266 7 2 746 309 262 81 56 chr5 21133861 21134059 -131403200 - Tigger6b DNA MER2_type -55 1542 1340 2 746 332 230 23 0 chr5 21134251 21134338 -131402921 - Tigger6b DNA MER2_type -338 1259 1171 2 746 2742 120 5 8 chr5 21134956 21135351 -131401908 - ORR1B1 LTR MaLR 0 394 1 2 746 7487 161 45 55 chr5 21135351 21136638 -131400621 - ORR1B1-int LTR MaLR 0 1509 244 2 746 1197 54 7 0 chr5 21136638 21136785 -131400474 - B1_Mus1 SINE Alu 0 148 1 2 746 7487 161 45 55 chr5 21136785 21137022 -131400237 - ORR1B1-int LTR MaLR -1266 243 1 2 746 1165 144 15 0 chr5 21137024 21137219 -131400040 - ORR1B1 LTR MaLR -2 392 195 2 746 269 147 64 18 chr5 21137197 21137271 -131399988 - ORR1B1 LTR MaLR -352 42 1 2 746 219 36 0 0 chr5 21137373 21137401 -131399858 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 746 433 276 8 8 chr5 21137653 21137770 -131399489 - PB1D10 SINE Alu 0 117 1 2 746 309 51 0 0 chr5 21138733 21138772 -131398487 + (TATG)n Simple_repeat Simple_repeat 4 42 0 2 746 816 158 27 20 chr5 21138974 21139123 -131398136 + B1_Mur4 SINE Alu 1 150 0 2 746 215 51 0 71 chr5 21139124 21139166 -131398093 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 746 1453 156 116 0 chr5 21139255 21139531 -131397728 + Lx9 LINE L1 6962 7269 -375 2 746 698 281 15 15 chr5 21139883 21140085 -131397174 + B3 SINE B2 2 203 -13 2 746 21 0 0 0 chr5 21140096 21140117 -131397142 + AT_rich Low_complexity Low_complexity 1 21 0 2 746 8474 126 13 20 chr5 21140231 21140258 -131397001 + Lx2A1 LINE L1 4087 4120 -1757 2 746 360 0 0 0 chr5 21140258 21140298 -131396961 + (CAA)n Simple_repeat Simple_repeat 3 42 0 2 746 9496 124 19 62 chr5 21140298 21141681 -131395578 + Lx2A1 LINE L1 4121 5471 -1537 2 746 2127 94 94 25 chr5 21141681 21142042 -131395217 + LTRIS4 LTR ERV1 122 507 0 2 746 9496 124 19 62 chr5 21142042 21143064 -131394195 + Lx2A1 LINE L1 5472 6472 -536 2 746 270 0 0 0 chr5 21143064 21143094 -131394165 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 746 9496 103 34 6 chr5 21143094 21143599 -131393660 + Lx2A1 LINE L1 6473 7008 0 2 746 402 207 57 11 chr5 21144016 21144104 -131393155 + B1_Mur3 SINE Alu 4 95 -54 2 746 211 333 19 19 chr5 21144104 21144123 -131393136 + ID_B1 SINE B4 85 191 -33 2 746 549 0 0 0 chr5 21144125 21144186 -131393073 + (GAAA)n Simple_repeat Simple_repeat 1 61 0 2 746 450 0 0 0 chr5 21144186 21144235 -131393024 + (GGGA)n Simple_repeat Simple_repeat 2 51 0 2 746 281 217 72 0 chr5 21144528 21144597 -131392662 - ID4 SINE ID -4 79 6 2 746 306 0 0 0 chr5 21144843 21144877 -131392382 + (GAGAA)n Simple_repeat Simple_repeat 2 35 0 2 746 862 165 6 6 chr5 21144879 21145050 -131392209 + G-rich Low_complexity Low_complexity 3 173 0 2 746 825 208 0 0 chr5 21145077 21145255 -131392004 + GA-rich Low_complexity Low_complexity 3 180 0 2 746 822 21 0 0 chr5 21145258 21145354 -131391905 + (GGAAA)n Simple_repeat Simple_repeat 2 97 0 2 746 367 217 65 0 chr5 21145716 21145808 -131391451 - PB1 SINE Alu -8 119 22 2 746 369 275 32 38 chr5 21146250 21146435 -131390824 - Lx6 LINE L1 0 7460 7277 2 746 1171 281 0 4 chr5 21146443 21146714 -131390545 + Lx5 LINE L1 6627 6896 -154 2 746 694 279 11 44 chr5 21147604 21147784 -131389475 + B4A SINE B4 2 175 -117 2 746 214 224 10 167 chr5 21147703 21147805 -131389454 + PB1D7 SINE Alu 18 103 -17 2 746 228 289 173 29 chr5 21148224 21148363 -131388896 + L1MEg LINE L1 145 303 -6149 2 746 388 248 26 103 chr5 21148723 21148840 -131388419 - B1F1 SINE Alu 0 117 10 2 746 314 289 88 57 chr5 21148937 21149289 -131387970 + L1MEg LINE L1 2233 2595 -4955 2 746 189 0 0 0 chr5 21149315 21149336 -131387923 + (GTTTG)n Simple_repeat Simple_repeat 4 24 0 2 746 510 167 53 8 chr5 21150417 21150550 -131386709 + Lx5 LINE L1 6909 7047 -3 2 746 275 167 0 95 chr5 21151503 21151629 -131385630 + (CGGGG)n Simple_repeat Simple_repeat 1 114 0 2 746 476 222 121 25 chr5 21153110 21153267 -131383992 - ID_B1 SINE B4 0 224 53 2 746 1016 61 41 0 chr5 21153792 21153939 -131383320 + B2_Mm2 SINE B2 1 153 -42 2 746 306 0 0 0 chr5 21153939 21153973 -131383286 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 746 285 208 179 24 chr5 21155070 21155193 -131382066 + L1MA6 LINE L1 6130 6271 -29 2 746 1407 174 87 26 chr5 21155311 21155820 -131381439 - RLTR20B3 LTR ERVK 0 577 1 2 746 398 246 24 102 chr5 21155824 21155951 -131381308 + B4A SINE B4 110 226 -66 2 746 403 279 101 0 chr5 21156106 21156235 -131381024 + B4 SINE B4 2 143 -149 2 746 1928 192 174 27 chr5 21156313 21156467 -131380792 - RLTR40 LTR ERVK -97 720 537 2 746 2429 132 0 8 chr5 21156467 21156835 -131380424 - ORR1B2 LTR MaLR -2 365 1 2 746 1928 192 174 27 chr5 21156835 21157302 -131379957 - RLTR40 LTR ERVK -281 536 8 2 746 234 0 0 0 chr5 21157347 21157373 -131379886 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 746 234 62 0 0 chr5 21157382 21157414 -131379845 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 746 231 216 0 0 chr5 21157818 21157869 -131379390 + RLTR12B LTR ERVK 14 64 -464 2 746 290 292 107 37 chr5 21157937 21158207 -131379052 + RLTR15 LTR ERVK 34 322 -37 2 746 431 198 70 0 chr5 21159439 21159525 -131377734 + B1_Mur2 SINE Alu 7 98 -51 2 746 438 217 128 17 chr5 21159599 21159716 -131377543 + B1_Mur2 SINE Alu 20 149 0 2 746 1166 82 0 0 chr5 21159744 21159890 -131377369 + B1_Mus2 SINE Alu 2 147 0 2 746 562 168 21 71 chr5 21160363 21160476 -131376783 - RSINE1 SINE B4 -31 134 27 2 746 3406 28 5 2 chr5 21160476 21160871 -131376388 - MTA_Mm LTR MaLR 0 396 1 2 746 9319 31 6 1 chr5 21160871 21161963 -131375296 - MTA_Mm-int LTR MaLR 0 1098 1 2 746 3474 23 8 0 chr5 21161963 21162356 -131374903 - MTA_Mm LTR MaLR 0 396 1 2 746 562 168 21 71 chr5 21162356 21162381 -131374878 - RSINE1 SINE B4 -139 26 3 2 746 811 119 11 33 chr5 21162448 21162631 -131374628 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 746 242 292 18 70 chr5 21162645 21162759 -131374500 - RSINE1 SINE B4 0 165 58 2 746 408 286 39 8 chr5 21162762 21162889 -131374370 - ID_B1 SINE B4 -35 189 59 2 746 21 36 0 0 chr5 21163255 21163283 -131373976 + AT_rich Low_complexity Low_complexity 1 28 0 2 746 299 246 62 16 chr5 21163341 21163469 -131373790 - B2_Mm2 SINE B2 -4 191 58 2 746 513 141 0 0 chr5 21163541 21163640 -131373619 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 2 746 369 248 47 47 chr5 21163641 21163747 -131373512 - PB1D10 SINE Alu 0 117 12 2 746 225 216 141 51 chr5 21164323 21164401 -131372858 - MamRep1161 DNA TcMar -837 120 36 2 746 707 224 112 0 chr5 21165582 21165752 -131371507 + B3 SINE B2 1 189 -27 2 746 355 314 132 11 chr5 21165826 21166016 -131371243 + B4A SINE B4 4 216 -76 2 746 518 194 269 12 chr5 21168522 21168689 -131368570 - B3 SINE B2 -6 210 1 2 746 325 267 42 0 chr5 21170280 21170400 -131366859 + L1MB3 LINE L1 6059 6183 0 3 746 21 0 0 0 chr5 21170402 21170423 -131366836 + AT_rich Low_complexity Low_complexity 1 21 0 3 746 317 283 33 0 chr5 21170493 21170585 -131366674 - PB1D10 SINE Alu -21 96 2 3 746 388 0 39 0 chr5 21170638 21170690 -131366569 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 746 1309 92 11 5 chr5 21171746 21171931 -131365328 + B2_Mm1t SINE B2 1 186 -7 3 746 311 319 113 7 chr5 21172000 21172142 -131365117 + RSINE1 SINE B4 8 164 -1 3 746 1054 184 20 5 chr5 21172262 21172464 -131364795 + B3 SINE B2 2 206 -10 3 746 268 222 99 20 chr5 21172587 21172688 -131364571 - Lx8 LINE L1 -5 7468 7360 3 746 4199 116 4 181 chr5 21173982 21174485 -131362774 + RMER6A LTR ERVK 1 358 -398 3 746 222 37 0 0 chr5 21174485 21174512 -131362747 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 746 4199 116 4 181 chr5 21174512 21174926 -131362333 + RMER6A LTR ERVK 359 756 0 3 746 688 232 58 29 chr5 21176514 21176687 -131360572 + B3A SINE B2 5 182 -16 3 746 198 67 0 0 chr5 21176699 21176711 -131360548 + (TAAAA)n Simple_repeat Simple_repeat 1 12 0 3 746 1180 55 14 0 chr5 21176711 21176857 -131360402 + B1_Mus1 SINE Alu 1 148 0 3 746 198 67 0 0 chr5 21176857 21176874 -131360385 + (TAAAA)n Simple_repeat Simple_repeat 3 19 0 3 746 1386 87 5 16 chr5 21176897 21177085 -131360174 + B2_Mm1a SINE B2 2 187 -6 3 746 936 182 34 0 chr5 21177502 21177678 -131359581 + B3A SINE B2 2 183 -15 3 746 356 296 20 34 chr5 21177699 21177711 -131359548 + ID_B1 SINE B4 78 218 -2 3 746 730 191 0 0 chr5 21177711 21177842 -131359417 + B1_Mus2 SINE Alu 11 141 -6 3 746 330 87 0 0 chr5 21177862 21177908 -131359351 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 746 821 174 157 5 chr5 21178465 21178650 -131358609 + B3 SINE B2 2 214 -2 3 746 195 69 0 0 chr5 21178659 21178688 -131358571 + (A)n Simple_repeat Simple_repeat 1 29 0 3 746 259 156 0 22 chr5 21180247 21180293 -131356966 + ID4_ SINE ID 3 47 -36 3 746 250 245 0 0 chr5 21180313 21180362 -131356897 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 746 722 233 15 31 chr5 21182511 21182706 -131354553 + B3A SINE B2 1 192 -6 3 746 324 0 0 0 chr5 21183054 21183090 -131354169 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 746 236 274 0 0 chr5 21183090 21183141 -131354118 - tRNA-Ala-GCA tRNA tRNA -9 66 16 3 746 335 257 144 41 chr5 21183209 21183355 -131353904 + L1MA10 LINE L1 6171 6331 -3 3 746 327 232 42 0 chr5 21183650 21183745 -131353514 + L1MB8 LINE L1 6060 6158 -20 3 746 929 200 77 3 chr5 21183828 21184135 -131353124 + ORR1D2 LTR MaLR 1 354 -5 3 746 814 233 99 0 chr5 21184288 21184511 -131352748 + B4A SINE B4 11 255 -37 3 746 354 23 0 0 chr5 21184512 21184555 -131352704 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 746 357 24 0 0 chr5 21184620 21184662 -131352597 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 3 746 1085 43 14 28 chr5 21184996 21185138 -131352121 + B1_Mus2 SINE Alu 2 141 -6 3 746 183 42 0 0 chr5 21185139 21185163 -131352096 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 746 204 40 0 0 chr5 21186205 21186230 -131351029 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 3 746 375 235 51 0 chr5 21187423 21187521 -131349738 + B1F1 SINE Alu 2 104 -45 3 746 273 149 0 85 chr5 21187745 21187818 -131349441 + PB1D7 SINE Alu 62 125 -2 3 746 249 239 0 15 chr5 21187854 21187922 -131349337 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 746 787 170 44 0 chr5 21188000 21188135 -131349124 - B1_Mm SINE Alu -5 142 2 3 746 216 239 159 0 chr5 21191051 21191139 -131346120 + MIRb SINE MIR 97 198 -70 3 746 1282 27 0 0 chr5 21191306 21191453 -131345806 + B1_Mus2 SINE Alu 1 147 0 3 746 499 190 58 41 chr5 21191816 21191937 -131345322 + B1_Mur2 SINE Alu 23 145 -4 3 746 23 101 0 0 chr5 21193935 21194014 -131343245 + AT_rich Low_complexity Low_complexity 1 79 0 3 746 21 0 0 0 chr5 21194025 21194046 -131343213 + AT_rich Low_complexity Low_complexity 1 21 0 3 746 222 37 0 0 chr5 21194066 21194093 -131343166 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 746 312 27 0 0 chr5 21194093 21194129 -131343130 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 746 2140 218 169 39 chr5 21194288 21195049 -131342210 + RMER13A LTR ERVK 1 860 0 3 746 2385 51 17 0 chr5 21196095 21196391 -131340868 + L1_Mus1 LINE L1 6267 6567 0 3 746 606 276 77 0 chr5 21196889 21197059 -131340200 + B3 SINE B2 26 208 -8 3 746 265 309 40 20 chr5 21197597 21197696 -131339563 + MIR3 SINE MIR 85 185 -23 3 746 3315 83 49 0 chr5 21198360 21198851 -131338408 + RLTR13D4 LTR ERVK 18 532 -501 3 746 970 65 29 0 chr5 21198850 21198988 -131338271 + B1_Mus2 SINE Alu 6 147 0 3 746 1095 0 23 65 chr5 21199016 21199278 -131337981 + (GGAAA)n Simple_repeat Simple_repeat 1 250 0 3 746 193 293 0 33 chr5 21199631 21199691 -131337568 + L2a LINE L2 3352 3409 -17 3 746 209 284 29 29 chr5 21200647 21200716 -131336543 - L4 LINE RTE -192 1837 1769 3 746 313 262 0 12 chr5 21201253 21201328 -131335931 - ID_B1 SINE B4 -2 222 148 3 746 1313 116 11 0 chr5 21201328 21201517 -131335742 - B2_Mm1t SINE B2 -2 191 1 3 746 216 294 46 23 chr5 21201663 21201750 -131335509 - MIRb SINE MIR -160 108 20 3 746 318 26 0 0 chr5 21201878 21201917 -131335342 + (TATG)n Simple_repeat Simple_repeat 2 40 0 3 746 925 104 22 0 chr5 21201917 21202052 -131335207 - B1_Mur4 SINE Alu -8 142 5 3 746 24 0 0 0 chr5 21203205 21203229 -131334030 + AT_rich Low_complexity Low_complexity 1 24 0 3 746 279 0 0 0 chr5 21203363 21203394 -131333865 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 746 435 245 48 41 chr5 21203754 21203899 -131333360 - B1F SINE Alu -1 148 3 3 746 1241 48 0 0 chr5 21204244 21204391 -131332868 + B1_Mm SINE Alu 1 147 0 3 746 1412 51 11 6 chr5 21204639 21204816 -131332443 + B2_Mm1t SINE B2 2 179 -14 3 746 407 92 163 36 chr5 21204829 21204946 -131332313 + B2_Mm2 SINE B2 47 192 -1 3 746 241 245 0 0 chr5 21205165 21205214 -131332045 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 746 2200 93 28 3 chr5 21205445 21205768 -131331491 + L1_Mus3 LINE L1 6308 6638 0 3 746 204 143 0 28 chr5 21206549 21206585 -131330674 + A-rich Low_complexity Low_complexity 2 36 0 3 746 210 333 14 14 chr5 21209930 21210003 -131327256 + RSINE1 SINE B4 2 74 -91 3 746 445 310 65 69 chr5 21210329 21210575 -131326684 + MLT1D LTR MaLR 1 245 -260 3 746 303 279 115 8 chr5 21210603 21210733 -131326526 + MLT1D LTR MaLR 346 489 -16 3 746 307 185 0 0 chr5 21210807 21210861 -131326398 + ID4_ SINE ID 1 54 -29 3 746 3917 30 35 84 chr5 21211394 21211487 -131325772 + MURVY-LTR LTR ERV1 1 93 -426 3 746 1586 48 0 0 chr5 21211487 21211673 -131325586 + B2_Mm1a SINE B2 1 186 -7 3 746 3917 30 35 84 chr5 21211673 21212125 -131325134 + MURVY-LTR LTR ERV1 94 519 0 3 746 561 202 96 52 chr5 21212885 21213021 -131324238 - B1_Mur1 SINE Alu -3 146 5 3 746 255 61 0 0 chr5 21213180 21213213 -131324046 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 3 746 1191 68 0 0 chr5 21213213 21213360 -131323899 - B1_Mus1 SINE Alu 0 148 2 3 746 1176 43 0 0 chr5 21213815 21213954 -131323305 + B1_Mus1 SINE Alu 1 139 -9 3 746 2781 134 47 4 chr5 21213986 21214474 -131322785 + ORR1B1-int LTR MaLR 1001 1509 0 3 746 1923 131 53 20 chr5 21214474 21214816 -131322443 + ORR1B1 LTR MaLR 1 353 -41 3 746 1139 59 0 0 chr5 21214816 21214952 -131322307 + B1_Mus1 SINE Alu 2 137 -11 3 746 286 149 0 0 chr5 21214971 21215018 -131322241 - B1_Mus1 SINE Alu -101 47 1 3 746 2180 171 113 60 chr5 21215030 21215702 -131321557 - ORR1A3-int LTR MaLR -534 1429 722 3 746 1024 264 81 30 chr5 21215720 21216114 -131321145 - BGLII_B LTR ERVK -18 423 10 3 746 260 185 215 0 chr5 21216164 21216229 -131321030 - MT2B LTR ERVL -447 154 76 3 746 783 96 0 0 chr5 21216229 21216344 -131320915 + B2_Mm2 SINE B2 1 115 -80 3 746 280 71 24 0 chr5 21216408 21216450 -131320809 + B2_Mm2 SINE B2 119 161 -34 3 746 234 0 0 0 chr5 21216450 21216476 -131320783 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 3 746 738 138 31 0 chr5 21216477 21216607 -131320652 - MT2B LTR ERVL -467 134 1 3 746 800 221 17 58 chr5 21216833 21217127 -131320132 + ORR1D1 LTR MaLR 3 368 -6 3 746 240 343 0 0 chr5 21217134 21217204 -131320055 + MLT1A LTR MaLR 45 114 -260 3 746 609 226 4 8 chr5 21217226 21217465 -131319794 + GA-rich Low_complexity Low_complexity 1 237 0 3 746 365 65 268 61 chr5 21217651 21217733 -131319526 - B1_Mus2 SINE Alu -7 140 42 3 746 792 243 82 13 chr5 21217798 21218031 -131319228 + MLT-int LTR MaLR 1425 1673 -62 3 746 220 49 48 24 chr5 21218609 21218651 -131318608 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 3 746 301 135 19 0 chr5 21218985 21219037 -131318222 - PB1D9 SINE Alu -7 113 61 3 746 396 241 52 58 chr5 21219667 21219821 -131317438 + MT2B LTR ERVL 126 278 -323 3 746 615 188 36 0 chr5 21219707 21219845 -131317414 + B1_Mus1 SINE Alu 6 148 0 3 746 405 193 193 0 chr5 21219881 21219995 -131317264 - MTEb LTR MaLR -122 257 122 3 746 1238 82 12 6 chr5 21220606 21220778 -131316481 - B2_Mm1t SINE B2 -19 174 2 3 746 394 247 0 0 chr5 21220805 21220886 -131316373 - ID4 SINE ID -1 82 2 3 746 735 176 35 21 chr5 21221193 21221338 -131315921 - B1_Mur4 SINE Alu 0 150 4 3 746 238 211 132 0 chr5 21221339 21221415 -131315844 + MTD LTR MaLR 1 86 -333 4 746 1332 222 63 15 chr5 21221515 21221848 -131315411 + MTD LTR MaLR 71 419 0 4 746 745 287 72 94 chr5 21222487 21223040 -131314219 + RLTR26 LTR ERVK 97 637 -5 4 746 1279 256 57 9 chr5 21223160 21223491 -131313768 + RMER15-int LTR ERVL 4358 4704 -295 4 746 574 178 119 0 chr5 21223641 21223759 -131313500 + B1_Mur2 SINE Alu 17 148 -1 4 746 328 305 66 12 chr5 21223874 21224040 -131313219 + RMER15 LTR ERVL 276 450 -125 4 746 561 195 97 0 chr5 21224086 21224199 -131313060 - RMER19B LTR ERVK -192 710 587 4 746 281 204 83 58 chr5 21224535 21224655 -131312604 - ORR1E LTR MaLR -157 202 80 4 746 264 246 0 15 chr5 21225066 21225132 -131312127 + MLT1A LTR MaLR 3 67 -307 4 746 1611 234 45 47 chr5 21225159 21225629 -131311630 + RLTR28B LTR ERVL 13 481 0 4 746 207 0 0 0 chr5 21225695 21225718 -131311541 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 746 1167 44 0 0 chr5 21225718 21225855 -131311404 - B1_Mus2 SINE Alu -9 138 2 4 746 260 246 77 0 chr5 21225985 21226050 -131311209 - Lx9 LINE L1 -439 7205 7136 4 746 299 288 0 14 chr5 21226061 21226135 -131311124 + Lx9 LINE L1 7261 7333 -311 4 746 573 242 26 62 chr5 21226137 21226331 -131310928 - RLTR23 LTR ERV1 0 430 244 4 746 460 290 30 102 chr5 21226547 21226881 -131310378 + Lx9 LINE L1 7331 7640 -4 4 746 727 204 0 27 chr5 21226899 21227045 -131310214 + B1_Mur2 SINE Alu 1 142 -7 4 746 2040 83 21 60 chr5 21227065 21227396 -131309863 + ORR1A2 LTR MaLR 10 327 0 4 746 788 57 9 0 chr5 21227413 21227519 -131309740 + (GGAA)n Simple_repeat Simple_repeat 4 110 0 4 746 1786 227 62 77 chr5 21227763 21228436 -131308823 + RMER1B Other Other 1 525 -541 4 746 644 217 64 21 chr5 21228462 21228650 -131308609 - RLTR20A2 LTR ERVK -338 240 45 4 746 2389 147 98 16 chr5 21228683 21229132 -131308127 + RMER1A Other Other 529 1014 -16 4 746 244 211 69 14 chr5 21229138 21229210 -131308049 + MLT1A LTR MaLR 299 374 0 4 746 833 224 0 76 chr5 21229274 21229460 -131307799 - B3 SINE B2 0 216 46 4 746 1201 201 92 28 chr5 21229460 21229836 -131307423 - RMER16 LTR ERVK 0 533 1 4 746 212 208 21 0 chr5 21229837 21229885 -131307374 - B3 SINE B2 -167 49 1 4 746 451 167 17 136 chr5 21229926 21230044 -131307215 - PB1D10 SINE Alu -8 109 6 4 746 435 43 43 0 chr5 21230083 21230153 -131307106 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 746 233 188 58 0 chr5 21231184 21231253 -131306006 + (TTTAA)n Simple_repeat Simple_repeat 3 75 0 4 746 300 243 18 88 chr5 21231351 21231464 -131305795 + PB1D10 SINE Alu 5 109 -8 4 746 718 116 0 9 chr5 21231871 21231984 -131305275 + B1_Mur4 SINE Alu 35 146 -4 4 746 2741 170 123 63 chr5 21232036 21232717 -131304542 + RMER1B Other Other 1 1042 -24 4 93 12164 62 21 11 chr5 21232715 21233695 -131303564 + MusHAL1 LINE L1 395 1395 -1317 4 747 3122 20 0 0 chr5 21233695 21234041 -131303218 + ORR1A0 LTR MaLR 1 346 0 4 747 12164 62 21 11 chr5 21234041 21234734 -131302525 + MusHAL1 LINE L1 1396 2086 -626 4 747 372 305 103 62 chr5 21235261 21235534 -131301725 - LTR16A1 LTR ERVL -89 367 84 4 747 201 108 0 0 chr5 21235556 21235593 -131301666 + (A)n Simple_repeat Simple_repeat 1 37 0 4 747 263 305 105 0 chr5 21235626 21235721 -131301538 - B4A SINE B4 -187 105 1 4 747 306 0 0 0 chr5 21235802 21235836 -131301423 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 4 747 350 269 54 0 chr5 21235846 21235939 -131301320 - ID_B1 SINE B4 -13 211 114 4 747 199 157 19 19 chr5 21236042 21236094 -131301165 + CT-rich Low_complexity Low_complexity 3 54 0 4 747 341 311 0 11 chr5 21236094 21236185 -131301074 - PB1D9 SINE Alu -23 97 8 4 747 250 349 0 11 chr5 21236107 21236194 -131301065 - B4A SINE B4 -123 169 84 4 747 576 150 19 31 chr5 21236219 21236549 -131300710 + (TG)n Simple_repeat Simple_repeat 1 325 0 4 747 189 125 17 35 chr5 21236561 21236619 -131300640 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 747 499 153 22 33 chr5 21236636 21236818 -131300441 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 747 615 143 29 21 chr5 21236830 21237078 -131300181 + (TG)n Simple_repeat Simple_repeat 1 250 0 4 747 197 169 24 24 chr5 21237090 21237175 -131300084 + (TG)n Simple_repeat Simple_repeat 1 85 0 4 747 624 217 133 9 chr5 21237175 21237355 -131299904 - B3A SINE B2 -13 203 6 4 747 540 298 112 66 chr5 21237715 21238186 -131299073 + RLTR11A2 LTR ERVK 19 511 -16 4 747 198 0 0 0 chr5 21238691 21238713 -131298546 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 4 747 1373 99 10 0 chr5 21239384 21239576 -131297683 - B2_Mm2 SINE B2 -1 194 1 4 747 239 302 100 31 chr5 21239584 21239714 -131297545 - L1MD2 LINE L1 0 6359 6221 4 747 1241 142 32 5 chr5 21239715 21239935 -131297324 + RMER6A LTR ERVK 531 756 0 4 747 213 146 0 24 chr5 21240323 21240365 -131296894 + G-rich Low_complexity Low_complexity 6 46 0 4 747 769 296 142 28 chr5 21240371 21240940 -131296319 + L1M2 LINE L1 3443 4076 -2067 4 747 362 315 20 7 chr5 21240987 21241134 -131296125 + B4A SINE B4 126 274 -18 4 747 183 80 0 0 chr5 21241139 21241164 -131296095 + (CG)n Simple_repeat Simple_repeat 1 25 0 4 747 190 56 56 0 chr5 21241164 21241199 -131296060 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 747 332 200 111 55 chr5 21241221 21241371 -131295888 + L1M2 LINE L1 5296 5460 -840 4 747 738 265 69 4 chr5 21241408 21241639 -131295620 - ORR1E LTR MaLR -72 287 42 4 747 1227 34 0 0 chr5 21241801 21241947 -131295312 - B1_Mus2 SINE Alu 0 147 2 4 747 526 248 13 26 chr5 21242195 21242348 -131294911 + RSINE1 SINE B4 2 152 -13 4 747 207 133 0 0 chr5 21243373 21243418 -131293841 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 4 747 408 112 121 36 chr5 21243548 21243631 -131293628 - B1_Mur3 SINE Alu -15 134 45 4 747 1419 166 127 9 chr5 21243742 21243922 -131293337 - ORR1C1 LTR MaLR -16 362 165 4 747 189 0 0 0 chr5 21243922 21243943 -131293316 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 4 747 1419 166 127 9 chr5 21243943 21244085 -131293174 - ORR1C1 LTR MaLR -214 164 2 4 747 207 0 0 0 chr5 21244849 21244872 -131292387 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 747 1227 41 0 0 chr5 21244872 21245017 -131292242 - B1_Mus1 SINE Alu -3 145 1 4 747 361 167 451 0 chr5 21245383 21245485 -131291774 - B1_Mus1 SINE Alu 0 148 1 4 747 513 292 41 6 chr5 21245633 21245802 -131291457 - B3A SINE B2 -9 189 15 4 747 25 90 0 0 chr5 21246717 21246784 -131290475 + AT_rich Low_complexity Low_complexity 1 67 0 4 747 1416 70 16 5 chr5 21246900 21247086 -131290173 - B2_Mm2 SINE B2 -6 189 2 4 747 394 230 78 16 chr5 21247223 21247351 -131289908 - B4A SINE B4 -52 240 105 4 747 485 163 30 20 chr5 21248034 21248134 -131289125 - B1_Mus2 SINE Alu -17 130 30 4 747 1213 41 0 13 chr5 21248311 21248460 -131288799 - B1_Mus2 SINE Alu 0 147 1 4 747 285 219 13 27 chr5 21249089 21249164 -131288095 + PB1D7 SINE Alu 47 120 0 4 747 402 221 23 23 chr5 21249862 21249950 -131287309 - PB1D7 SINE Alu -2 118 31 4 747 671 196 26 59 chr5 21250409 21250561 -131286698 - B1_Mus1 SINE Alu -1 147 1 4 747 1016 195 11 5 chr5 21250645 21250836 -131286423 - B3 SINE B2 -24 192 1 4 747 406 281 17 9 chr5 21250880 21250995 -131286264 + PB1D10 SINE Alu 1 116 -1 4 747 371 233 132 8 chr5 21251958 21252079 -131285180 + B3A SINE B2 1 136 -62 4 747 1249 34 0 0 chr5 21252093 21252240 -131285019 - B1_Mus2 SINE Alu 0 147 1 4 747 517 211 0 0 chr5 21253787 21253882 -131283377 + B1_Mus2 SINE Alu 5 99 -48 4 747 27 29 0 0 chr5 21253882 21253916 -131283343 + AT_rich Low_complexity Low_complexity 1 34 0 4 747 309 203 17 0 chr5 21254381 21254440 -131282819 + B1F1 SINE Alu 84 143 -6 4 747 23801 113 35 14 chr5 21254832 21255666 -131281593 - Lx LINE L1 0 6654 5797 4 747 1390 83 39 0 chr5 21255666 21255847 -131281412 - B2_Mm2 SINE B2 -6 189 2 4 747 23801 154 26 73 chr5 21255847 21257973 -131279286 - Lx LINE L1 -89 5797 3764 4 747 1205 67 0 11 chr5 21257973 21258155 -131279104 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 4 747 23801 154 26 73 chr5 21258155 21258168 -131279091 - Lx LINE L1 -2123 3763 3763 4 747 1198 35 0 14 chr5 21258168 21258312 -131278947 - B1_Mus1 SINE Alu -6 142 1 4 747 23801 154 26 73 chr5 21258312 21258631 -131278628 - Lx LINE L1 -2123 3763 3455 4 747 1040 45 60 0 chr5 21258631 21258765 -131278494 - B1_Mus1 SINE Alu -5 143 2 4 747 23801 154 26 73 chr5 21258765 21258779 -131278480 - L1_Mur1 LINE L1 -2432 3454 3454 4 747 222 37 0 0 chr5 21258779 21258806 -131278453 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 4 747 1283 84 17 0 chr5 21258806 21258984 -131278275 - B2_Mm1a SINE B2 -12 181 1 4 747 23801 146 29 75 chr5 21258984 21261431 -131275828 - Lx LINE L1 -2432 3454 1124 4 747 1162 99 52 6 chr5 21261431 21261603 -131275656 - B2_Mm2 SINE B2 -15 180 1 4 747 2782 70 54 87 chr5 21261603 21261886 -131275373 - Lx LINE L1 -5534 1123 843 4 747 225 281 208 50 chr5 21263290 21263391 -131273868 + PB1D10 SINE Alu 1 117 0 4 747 1456 65 16 0 chr5 21263999 21264185 -131273074 - B2_Mm1a SINE B2 -4 189 1 4 747 234 281 44 11 chr5 21264250 21264340 -131272919 + PB1 SINE Alu 9 101 -26 4 747 1250 41 0 0 chr5 21265040 21265187 -131272072 + B1_Mus1 SINE Alu 2 148 0 4 747 234 237 62 50 chr5 21265252 21265332 -131271927 + ID4_ SINE ID 1 81 -2 4 747 307 261 59 29 chr5 21265601 21265771 -131271488 - L1MC4 LINE L1 -51 7991 7817 4 747 310 221 12 72 chr5 21265796 21265879 -131271380 - RSINE1 SINE B4 -85 80 3 4 747 21 71 0 0 chr5 21266361 21266403 -131270856 + AT_rich Low_complexity Low_complexity 1 42 0 4 747 870 109 0 0 chr5 21266727 21266855 -131270404 + B2_Mm2 SINE B2 31 158 -37 4 747 417 206 0 0 chr5 21268754 21268827 -131268432 + B1_Mus1 SINE Alu 1 73 -75 4 747 883 142 57 0 chr5 21268947 21269088 -131268171 + B1_Mur4 SINE Alu 1 149 -1 4 747 621 72 0 0 chr5 21269414 21269497 -131267762 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 747 1325 86 27 5 chr5 21270105 21270292 -131266967 + B2_Mm2 SINE B2 5 195 0 4 747 203 378 25 0 chr5 21270781 21270900 -131266359 + L2 LINE L2 2627 2748 -671 4 747 245 286 20 81 chr5 21271726 21271825 -131265434 + RMER15 LTR ERVL 425 517 -58 4 747 523 272 102 0 chr5 21272043 21272190 -131265069 + RSINE1 SINE B4 4 165 0 4 747 3142 47 37 3 chr5 21272645 21273028 -131264231 + MTA_Mm LTR MaLR 1 396 0 4 747 27 29 0 0 chr5 21273066 21273100 -131264159 + AT_rich Low_complexity Low_complexity 1 34 0 5 747 1138 72 0 0 chr5 21273100 21273239 -131264020 + B1_Mus1 SINE Alu 1 139 -9 5 747 956 51 11 54 chr5 21273239 21273424 -131263835 + (GGAAA)n Simple_repeat Simple_repeat 3 179 0 5 747 521 209 208 33 chr5 21273471 21273654 -131263605 + B3 SINE B2 2 216 0 5 747 228 216 20 0 chr5 21273675 21273726 -131263533 + B1_Mus2 SINE Alu 3 54 -93 5 747 559 136 67 19 chr5 21273759 21273864 -131263395 + B1_Mur2 SINE Alu 40 149 0 5 747 449 128 137 11 chr5 21274047 21274142 -131263117 + B1_Mur2 SINE Alu 41 147 -2 5 747 589 273 45 30 chr5 21274879 21275079 -131262180 + B3 SINE B2 1 203 -13 5 747 1699 283 112 14 chr5 21275120 21275762 -131261497 + Lx8 LINE L1 6583 7287 -186 5 747 323 266 53 0 chr5 21275945 21276039 -131261220 + RSINE1 SINE B4 32 130 -35 5 747 225 0 0 0 chr5 21276250 21276275 -131260984 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 747 3447 23 5 5 chr5 21276580 21276976 -131260283 + MTA_Mm LTR MaLR 1 396 0 5 747 9634 28 0 0 chr5 21276976 21278074 -131259185 + MTA_Mm-int LTR MaLR 1 1098 0 5 747 3545 20 2 0 chr5 21278074 21278469 -131258790 + MTA_Mm LTR MaLR 1 396 0 5 747 517 160 268 0 chr5 21278732 21278885 -131258374 + B3 SINE B2 10 203 -13 5 747 422 237 82 0 chr5 21278964 21279061 -131258198 - PB1D9 SINE Alu -12 108 4 5 747 386 198 154 0 chr5 21279083 21279174 -131258085 + PB1D9 SINE Alu 6 110 -10 5 747 186 43 0 0 chr5 21279174 21279197 -131258062 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 747 427 118 10 124 chr5 21279219 21279316 -131257943 + B1_Mm SINE Alu 62 147 0 5 747 223 248 107 41 chr5 21281277 21281399 -131255860 + B1F SINE Alu 11 140 -9 5 747 300 211 118 32 chr5 21281577 21281670 -131255589 + PB1D7 SINE Alu 17 117 -3 5 747 230 311 81 0 chr5 21281814 21281888 -131255371 - ID4_ SINE ID -2 81 2 5 747 311 266 31 31 chr5 21282265 21282362 -131254897 - MER5A1 DNA MER1_type -32 134 38 5 747 2680 57 3 0 chr5 21282713 21283047 -131254212 - L1_Mus1 LINE L1 0 6567 6233 5 747 3726 53 1 0 chr5 21283047 21283647 -131253612 + L1_Mus1 LINE L1 5430 6030 -537 5 747 251 224 78 57 chr5 21284046 21284159 -131253100 - L1ME3 LINE L1 -18 6161 6051 5 747 548 195 16 0 chr5 21284275 21284403 -131252856 + (CATATA)n Simple_repeat Simple_repeat 6 135 0 5 747 1654 26 11 0 chr5 21284440 21284630 -131252629 - B2_Mm1a SINE B2 0 193 2 5 747 322 296 56 8 chr5 21284707 21284833 -131252426 - L1ME3 LINE L1 -351 5813 5682 5 747 3437 166 98 70 chr5 21285019 21285899 -131251360 + RMER13B LTR ERVK 5 908 0 5 747 362 284 101 32 chr5 21286327 21286516 -131250743 + B3A SINE B2 2 203 -13 5 747 445 316 0 0 chr5 21286520 21286672 -131250587 + (CA)n Simple_repeat Simple_repeat 1 152 0 5 747 210 227 303 0 chr5 21286765 21286831 -131250428 + PB1D10 SINE Alu 20 105 -12 5 747 251 214 42 28 chr5 21286862 21286934 -131250325 + ID4 SINE ID 2 74 -9 5 747 764 213 0 7 chr5 21287448 21287599 -131249660 + B1_Mur4 SINE Alu 1 150 0 5 747 441 287 50 17 chr5 21287962 21288143 -131249116 - B4 SINE B4 -4 288 102 5 747 503 296 30 0 chr5 21288541 21288673 -131248586 - ID_B1 SINE B4 -5 219 84 5 747 410 287 0 18 chr5 21289254 21289364 -131247895 + RSINE1 SINE B4 37 144 -21 5 747 194 81 27 0 chr5 21291168 21291205 -131246054 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 5 747 276 288 35 59 chr5 21291233 21291318 -131245941 - PB1D7 SINE Alu -8 112 30 5 747 599 266 111 55 chr5 21291329 21291764 -131245495 - L1MB2 LINE L1 -232 5939 5484 5 747 213 226 327 9 chr5 21291786 21291893 -131245366 + B1_Mur3 SINE Alu 2 142 -7 5 747 441 54 0 0 chr5 21291910 21291966 -131245293 + (GGA)n Simple_repeat Simple_repeat 2 57 0 5 747 317 198 47 47 chr5 21291993 21292078 -131245181 - L1MB2 LINE L1 -771 5403 5319 5 747 241 26 26 26 chr5 21293491 21293530 -131243729 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 747 319 240 9 9 chr5 21294744 21294849 -131242410 + CT-rich Low_complexity Low_complexity 4 108 0 5 747 210 344 31 41 chr5 21294857 21294954 -131242305 + MIRc SINE MIR 16 111 -157 5 747 696 209 144 86 chr5 21295875 21296153 -131241106 - MER68 LTR ERVL -267 296 3 5 747 288 0 0 0 chr5 21296391 21296423 -131240836 + (T)n Simple_repeat Simple_repeat 1 32 0 5 747 623 207 50 7 chr5 21296455 21296596 -131240663 - B1_Mus1 SINE Alu 0 148 2 5 747 649 183 130 0 chr5 21296732 21296863 -131240396 - B1_Mur3 SINE Alu -1 148 1 5 747 667 149 134 176 chr5 21297605 21297735 -131239524 - RLTR20D LTR ERVK 0 568 481 5 747 396 0 0 0 chr5 21297735 21297779 -131239480 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 747 1987 124 60 15 chr5 21297779 21298158 -131239101 - RLTR20D LTR ERVK -88 480 1 5 747 718 180 16 0 chr5 21298223 21298351 -131238908 - B1_Mus1 SINE Alu -18 130 1 5 747 22 0 0 0 chr5 21298476 21298498 -131238761 + AT_rich Low_complexity Low_complexity 1 22 0 5 747 9599 63 29 15 chr5 21298498 21299919 -131237340 - L1_Mus1 LINE L1 0 6567 5177 5 747 1148 102 85 0 chr5 21299919 21300095 -131237164 - B2_Mm1t SINE B2 0 193 3 5 747 9599 93 21 45 chr5 21300095 21300790 -131236469 - L1_Mus1 LINE L1 -707 5176 4479 5 747 245 235 59 0 chr5 21301332 21301400 -131235859 + B1F1 SINE Alu 64 135 -14 5 747 24 0 0 0 chr5 21301710 21301734 -131235525 + AT_rich Low_complexity Low_complexity 1 24 0 5 747 330 260 47 19 chr5 21302187 21302293 -131234966 + MER20 DNA MER1_type 106 214 -5 5 747 269 267 65 46 chr5 21302808 21302961 -131234298 - RSINE1 SINE B4 -8 157 2 5 747 1010 102 0 7 chr5 21302993 21303141 -131234118 - B1_Mus2 SINE Alu 0 147 1 5 747 258 311 29 29 chr5 21303147 21303283 -131233976 - ID_B1 SINE B4 -2 222 87 5 747 312 298 52 9 chr5 21303172 21303287 -131233972 - B1F2 SINE Alu -28 121 2 5 747 381 279 50 31 chr5 21303390 21303564 -131233695 - L1M4 LINE L1 -5261 1346 1182 5 747 1319 106 11 0 chr5 21303613 21303801 -131233458 - B2_Mm1t SINE B2 -2 191 2 5 747 377 301 27 113 chr5 21303844 21303994 -131233265 - RSINE1 SINE B4 -22 143 7 5 747 498 234 19 8 chr5 21304197 21304315 -131232944 - PB1D7 SINE Alu -3 124 2 5 747 205 175 25 0 chr5 21304470 21304510 -131232749 + C-rich Low_complexity Low_complexity 1 41 0 5 747 633 240 14 14 chr5 21305873 21306021 -131231238 + B1F SINE Alu 1 148 -1 5 747 207 0 0 0 chr5 21307416 21307439 -131229820 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 747 1183 48 7 0 chr5 21307784 21307930 -131229329 + B1_Mus2 SINE Alu 1 147 0 5 747 761 171 50 0 chr5 21308071 21308211 -131229048 - B1_Mus2 SINE Alu 0 147 1 5 747 21 0 0 0 chr5 21308280 21308301 -131228958 + AT_rich Low_complexity Low_complexity 1 21 0 5 747 443 299 106 5 chr5 21308519 21308746 -131228513 + Lx7 LINE L1 7125 7361 -335 5 747 639 159 38 45 chr5 21310217 21310349 -131226910 - B1_Mur1 SINE Alu -8 141 11 5 747 270 262 17 142 chr5 21310250 21310370 -131226889 - MT2B LTR ERVL -341 260 156 5 747 1260 97 38 0 chr5 21310384 21310570 -131226689 + B2_Mm2 SINE B2 2 194 -1 5 747 1161 68 7 0 chr5 21311207 21311354 -131225905 - B1_Mus1 SINE Alu 0 148 1 5 747 659 147 0 18 chr5 21313684 21313795 -131223464 + PB1D9 SINE Alu 1 109 -11 5 747 1216 54 0 0 chr5 21313959 21314106 -131223153 - B1_Mus2 SINE Alu 0 147 1 5 747 3121 63 10 0 chr5 21314332 21314728 -131222531 + MTB LTR MaLR 1 400 0 5 747 239 180 48 16 chr5 21315254 21315316 -131221943 + L1MC5 LINE L1 7482 7545 -416 5 747 264 163 0 0 chr5 21317257 21317300 -131219959 - ID_B1 SINE B4 -8 216 174 5 747 254 162 169 39 chr5 21317300 21317326 -131219933 - PB1D10 SINE Alu -1 98 30 5 747 405 0 0 0 chr5 21317351 21317396 -131219863 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 747 387 0 0 0 chr5 21317396 21317438 -131219821 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 747 345 180 0 0 chr5 21317445 21317506 -131219753 - B1_Mus2 SINE Alu -82 65 5 5 747 713 128 58 43 chr5 21317661 21317800 -131219459 + B1_Mur3 SINE Alu 9 149 0 5 747 591 53 0 0 chr5 21317802 21317877 -131219382 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 747 214 253 91 26 chr5 21317903 21317980 -131219279 + B1_Mus1 SINE Alu 2 83 -65 5 747 237 229 16 16 chr5 21318093 21318155 -131219104 - ID4_ SINE ID -20 63 2 5 747 751 203 14 0 chr5 21318244 21318382 -131218877 - B1_Mur1 SINE Alu -5 144 5 5 747 29 28 0 0 chr5 21318927 21318963 -131218296 + AT_rich Low_complexity Low_complexity 1 36 0 5 747 280 202 0 102 chr5 21319023 21319111 -131218148 + B3 SINE B2 138 216 0 5 747 362 245 130 53 chr5 21319366 21319573 -131217686 + L1MC5 LINE L1 7668 7890 -71 5 747 882 183 109 50 chr5 21319922 21320123 -131217136 - B3 SINE B2 -3 213 1 5 747 274 147 221 0 chr5 21320513 21320581 -131216678 - PB1D9 SINE Alu 0 120 38 5 747 283 247 61 51 chr5 21321228 21321326 -131215933 + L1MB4 LINE L1 6070 6168 -12 5 747 22 0 0 0 chr5 21322212 21322234 -131215025 + AT_rich Low_complexity Low_complexity 1 22 0 5 747 954 140 14 0 chr5 21323124 21323267 -131213992 + B1_Mur4 SINE Alu 1 145 -5 5 747 1871 156 121 84 chr5 21323958 21324304 -131212955 + MTC LTR MaLR 1 377 -44 5 747 1192 54 0 0 chr5 21324304 21324451 -131212808 - B1_Mus1 SINE Alu 0 148 2 5 747 1871 156 121 84 chr5 21324451 21324510 -131212749 + MTC LTR MaLR 378 421 0 5 747 428 169 0 25 chr5 21325036 21325115 -131212144 + B3 SINE B2 1 77 -139 5 747 806 188 34 11 chr5 21325130 21325308 -131211951 + RLTR16 LTR ERVK 1 182 -323 5 747 744 200 0 0 chr5 21325663 21325838 -131211421 + (CA)n Simple_repeat Simple_repeat 1 175 0 6 747 456 221 0 0 chr5 21325849 21325962 -131211297 + (CA)n Simple_repeat Simple_repeat 1 113 0 6 747 1055 58 73 0 chr5 21327046 21327183 -131210076 + B1_Mm SINE Alu 1 147 0 6 747 389 297 95 0 chr5 21327329 21327477 -131209782 - MER3 DNA MER1_type -1 208 47 6 747 492 158 197 55 chr5 21328412 21328539 -131208720 + B1F SINE Alu 4 148 -1 6 747 749 171 0 0 chr5 21328571 21328688 -131208571 + PB1D9 SINE Alu 1 117 -3 6 747 318 279 37 28 chr5 21328892 21328999 -131208260 + B1F1 SINE Alu 27 134 -15 6 747 572 123 35 0 chr5 21329004 21329118 -131208141 + GA-rich Low_complexity Low_complexity 2 119 0 6 747 1360 133 196 103 chr5 21330932 21331252 -131206007 - ORR1B1 LTR MaLR -9 320 3 6 747 739 184 7 26 chr5 21331490 21331641 -131205618 + B1_Mur3 SINE Alu 2 149 0 6 747 231 157 0 0 chr5 21331652 21331703 -131205556 + (CCAA)n Simple_repeat Simple_repeat 2 52 0 6 747 2052 300 95 25 chr5 21331720 21332634 -131204625 + MTE-int LTR MaLR 24 1002 -578 6 747 405 287 45 27 chr5 21332634 21332827 -131204432 + ORR1E LTR MaLR 1 195 -175 6 747 274 301 78 0 chr5 21333165 21333268 -131203991 - B1F1 SINE Alu -36 113 3 6 747 198 312 135 35 chr5 21333696 21333925 -131203334 + L2c LINE L2 3122 3385 -2 6 747 591 15 0 0 chr5 21334306 21334374 -131202885 + (GGGAA)n Simple_repeat Simple_repeat 3 70 0 6 747 850 147 6 6 chr5 21334376 21334534 -131202725 + GA-rich Low_complexity Low_complexity 1 158 0 6 747 297 324 78 0 chr5 21334890 21334992 -131202267 - MIR SINE MIR -72 136 27 6 747 1122 276 86 3 chr5 21335128 21335477 -131201782 - MTE2b LTR MaLR -1 378 1 6 747 484 325 64 64 chr5 21335502 21335656 -131201603 + L1MB2 LINE L1 5677 5826 -345 6 747 4488 151 52 5 chr5 21335656 21336413 -131200846 + Lx5 LINE L1 6251 7042 -8 6 747 484 325 64 64 chr5 21336413 21336695 -131200564 + L1MB2 LINE L1 5827 6113 -58 6 747 903 214 31 20 chr5 21336709 21336905 -131200354 + B3A SINE B2 1 198 0 6 747 707 165 33 0 chr5 21336970 21337091 -131200168 - B1_Mur2 SINE Alu -13 136 12 6 747 375 23 0 0 chr5 21337119 21337163 -131200096 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 747 21 0 0 0 chr5 21338283 21338304 -131198955 + AT_rich Low_complexity Low_complexity 1 21 0 6 747 366 23 0 0 chr5 21338390 21338433 -131198826 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 747 497 272 0 0 chr5 21338440 21338543 -131198716 - RSINE1 SINE B4 -17 148 46 6 747 479 222 0 0 chr5 21339107 21339197 -131198062 - PB1D10 SINE Alu -13 104 15 6 747 280 318 143 31 chr5 21339429 21339653 -131197606 + MER119 DNA MER1_type 283 531 -52 6 747 321 312 69 14 chr5 21340229 21340447 -131196812 + L1MB4 LINE L1 5905 6134 -46 6 747 624 268 40 1 chr5 21340484 21340679 -131196580 - B3 SINE B2 -3 213 3 6 747 307 288 0 0 chr5 21340745 21340818 -131196441 + ID4_ SINE ID 1 73 -10 6 747 25 51 0 0 chr5 21340899 21340938 -131196321 + AT_rich Low_complexity Low_complexity 1 39 0 6 747 754 100 0 0 chr5 21340951 21341061 -131196198 - B2_Mm2 SINE B2 -84 111 2 6 747 275 213 0 16 chr5 21341102 21341164 -131196095 - PB1D10 SINE Alu -2 115 55 6 747 192 281 146 0 chr5 21341858 21341940 -131195319 + L2b LINE L2 3246 3339 -36 6 747 803 204 23 0 chr5 21342105 21342277 -131194982 - B3A SINE B2 -22 176 1 6 747 795 206 14 0 chr5 21342577 21342718 -131194541 - B1_Mur1 SINE Alu -6 143 1 6 747 1652 273 50 56 chr5 21344018 21344624 -131192635 + RLTR18 LTR ERVK 15 616 0 6 747 538 309 76 36 chr5 21344635 21344860 -131192399 + B4A SINE B4 3 236 -56 6 747 345 47 0 0 chr5 21344893 21344936 -131192323 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 747 336 273 57 0 chr5 21344973 21345061 -131192198 - RSINE1 SINE B4 -25 140 48 6 747 717 256 32 38 chr5 21345095 21345440 -131191819 + RLTR15 LTR ERVK 1 343 -16 6 747 36 0 0 0 chr5 21345710 21345746 -131191513 + AT_rich Low_complexity Low_complexity 1 36 0 6 747 217 219 0 0 chr5 21346128 21346169 -131191090 + GA-rich Low_complexity Low_complexity 1 41 0 6 747 1358 244 47 11 chr5 21346681 21347041 -131190218 + MTE2b LTR MaLR 3 375 -4 6 747 802 142 155 0 chr5 21347704 21347859 -131189400 - URR1A DNA MER1_type -43 183 5 6 747 1219 271 141 23 chr5 21348178 21348680 -131188579 - L1MC1 LINE L1 0 6333 5772 6 747 198 0 0 0 chr5 21348680 21348702 -131188557 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 747 1219 273 127 18 chr5 21348702 21348776 -131188483 - L1MC1 LINE L1 -562 5771 5658 6 747 450 0 0 0 chr5 21348793 21348843 -131188416 + (TTCC)n Simple_repeat Simple_repeat 2 51 0 6 747 6082 34 1 0 chr5 21349192 21349901 -131187358 - L1Md_T LINE L1 -1 6581 5872 6 747 299 291 9 37 chr5 21350457 21350564 -131186695 - PB1D10 SINE Alu -43 104 1 6 747 308 24 24 0 chr5 21350568 21350609 -131186650 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 747 955 119 56 17 chr5 21350627 21350807 -131186452 - B2_Mm2 SINE B2 -8 187 1 6 747 840 152 51 56 chr5 21351184 21351379 -131185880 - B2_Mm2 SINE B2 -1 194 1 6 747 600 194 109 29 chr5 21351488 21351626 -131185633 - B1_Mur1 SINE Alu 0 149 1 6 747 216 0 0 0 chr5 21351986 21352010 -131185249 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 747 521 239 199 80 chr5 21352459 21352795 -131184464 + MTE2a LTR MaLR 3 378 -1 6 747 300 306 36 27 chr5 21354052 21354163 -131183096 + ID_B1 SINE B4 110 221 -3 6 747 231 289 238 13 chr5 21354494 21354645 -131182614 - ORR1E LTR MaLR -169 190 6 6 747 205 182 0 0 chr5 21354769 21354802 -131182457 + (CATG)n Simple_repeat Simple_repeat 4 36 0 6 747 369 0 0 0 chr5 21354802 21354843 -131182416 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 747 546 315 12 6 chr5 21354861 21355024 -131182235 - B4 SINE B4 -127 165 2 6 747 702 227 130 61 chr5 21355102 21355461 -131181798 + MTD LTR MaLR 1 421 0 6 747 616 343 43 6 chr5 21355575 21355927 -131181332 - L1MA10 LINE L1 -2 6332 5968 6 747 423 229 95 0 chr5 21356132 21356237 -131181022 + MTD LTR MaLR 1 115 -304 6 747 456 269 0 0 chr5 21356438 21356546 -131180713 - PB1 SINE Alu -8 119 12 6 747 352 311 34 58 chr5 21357085 21357212 -131180047 - L1ME4a LINE L1 -245 5879 5757 6 747 1392 82 27 0 chr5 21357212 21357396 -131179863 + B2_Mm2 SINE B2 1 189 -6 6 747 352 311 34 58 chr5 21357396 21357473 -131179786 - L1ME4a LINE L1 -368 5756 5680 6 747 192 167 0 0 chr5 21358015 21358063 -131179196 + G-rich Low_complexity Low_complexity 1 48 0 6 747 433 179 80 40 chr5 21358401 21358576 -131178683 + RMER17C LTR ERVK 91 272 -138 6 747 450 167 119 0 chr5 21358857 21358941 -131178318 - PB1 SINE Alu -3 124 31 6 747 526 282 85 42 chr5 21359067 21359256 -131178003 - ID_B1 SINE B4 -26 198 2 6 747 331 316 68 0 chr5 21359321 21359438 -131177821 + PB1 SINE Alu 1 125 -2 6 747 828 254 47 71 chr5 21359721 21360018 -131177241 - B4A SINE B4 0 292 3 6 747 347 294 169 31 chr5 21360155 21360285 -131176974 + RSINE1 SINE B4 3 150 -15 6 747 27 49 0 0 chr5 21360312 21360353 -131176906 + AT_rich Low_complexity Low_complexity 1 41 0 6 747 441 0 0 0 chr5 21360418 21360467 -131176792 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 6 747 639 219 31 0 chr5 21360474 21360602 -131176657 - B1_Mus2 SINE Alu -14 133 2 6 747 918 239 22 18 chr5 21360666 21360888 -131176371 - ID_B1 SINE B4 0 224 2 6 747 311 337 0 0 chr5 21360891 21360983 -131176276 - PB1D10 SINE Alu -20 97 6 6 747 1060 198 70 12 chr5 21361013 21361269 -131175990 - Lx5 LINE L1 -1 7049 6779 6 747 333 0 0 0 chr5 21361297 21361334 -131175925 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 6 747 409 296 72 23 chr5 21361334 21361358 -131175901 - B4 SINE B4 -47 245 207 6 747 648 134 134 0 chr5 21361358 21361372 -131175887 - B1_Mur2 SINE Alu -6 143 130 6 747 306 0 0 0 chr5 21361372 21361406 -131175853 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 747 648 134 134 0 chr5 21361406 21361510 -131175749 - B1_Mur2 SINE Alu -20 129 10 6 747 409 276 72 29 chr5 21361510 21361528 -131175731 - B4 SINE B4 -86 206 78 6 747 363 304 17 26 chr5 21361902 21362017 -131175242 - PB1D10 SINE Alu -2 115 2 6 747 378 332 43 10 chr5 21362069 21362276 -131174983 - HAL1 LINE L1 -731 1776 1563 6 747 366 107 0 0 chr5 21362578 21362634 -131174625 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 6 747 279 322 128 40 chr5 21362835 21362984 -131174275 + RSINE1 SINE B4 4 165 0 6 747 192 152 0 0 chr5 21363344 21363377 -131173882 + CT-rich Low_complexity Low_complexity 15 47 0 6 747 1371 109 5 0 chr5 21363377 21363569 -131173690 - B2_Mm1t SINE B2 0 193 1 6 747 646 244 87 16 chr5 21363958 21364141 -131173118 + MER2 DNA MER2_type 150 345 0 6 747 299 255 9 81 chr5 21364343 21364454 -131172805 - Lx8 LINE L1 0 7473 7371 6 747 266 148 19 0 chr5 21364490 21364544 -131172715 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 6 93 428 205 138 23 chr5 21364641 21364771 -131172488 - Lx8 LINE L1 -282 7191 7047 6 748 811 256 98 25 chr5 21365349 21365709 -131171550 + L1MA5 LINE L1 5445 5845 -455 6 748 378 0 0 0 chr5 21367947 21367989 -131169270 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 748 471 341 22 0 chr5 21367994 21368132 -131169127 - RSINE1 SINE B4 -22 143 3 6 748 414 0 0 0 chr5 21368290 21368336 -131168923 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 748 365 280 103 0 chr5 21368398 21368505 -131168754 - PB1 SINE Alu -4 123 6 6 748 376 295 54 0 chr5 21368650 21368762 -131168497 + ID_B1 SINE B4 86 203 -21 7 748 573 270 178 0 chr5 21369131 21369316 -131167943 + ID_B1 SINE B4 7 224 0 7 748 185 0 40 0 chr5 21370154 21370179 -131167080 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 7 748 201 176 0 0 chr5 21370458 21370492 -131166767 + (TTA)n Simple_repeat Simple_repeat 1 34 0 7 748 782 104 0 138 chr5 21371723 21371890 -131165369 + L1Md_F2 LINE L1 6437 6580 -2 7 748 261 305 8 85 chr5 21372713 21372842 -131164417 - MER5A1 DNA MER1_type -1 165 47 7 748 992 128 0 13 chr5 21373056 21373207 -131164052 - B1_Mur4 SINE Alu 0 150 2 7 748 5269 50 4 93 chr5 21373240 21373316 -131163943 - MusHAL1 LINE L1 -4 3910 3852 7 748 1140 95 0 0 chr5 21373316 21373463 -131163796 - B1_Mus1 SINE Alu 0 148 2 7 748 6851 93 44 32 chr5 21373463 21375137 -131162122 - MusHAL1 LINE L1 -63 3851 2001 7 748 11071 45 4 2 chr5 21375138 21377207 -131160052 - L1Md_F2 LINE L1 0 6582 4507 7 748 5703 58 21 1 chr5 21377203 21378438 -131158821 - MusHAL1 LINE L1 -1915 1999 750 7 748 533 256 15 50 chr5 21378471 21378661 -131158598 - B3A SINE B2 0 216 47 7 748 473 333 117 3 chr5 21378859 21379175 -131158084 - L1MC4a LINE L1 -1965 5917 5566 7 748 228 194 104 65 chr5 21379179 21379256 -131158003 - RMER30 DNA MER1_type -4 198 119 7 748 356 125 16 0 chr5 21379270 21379334 -131157925 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 748 281 270 66 22 chr5 21379334 21379425 -131157834 - RMER30 DNA MER1_type -106 96 2 7 748 447 262 84 34 chr5 21379490 21379718 -131157541 - L1MC4a LINE L1 -687 5507 5265 7 748 1097 259 75 10 chr5 21379849 21380157 -131157102 - Lx7 LINE L1 -733 6963 6636 7 748 391 245 43 0 chr5 21380321 21380415 -131156844 + B4A SINE B4 1 98 -194 7 748 25 0 0 0 chr5 21380535 21380560 -131156699 + AT_rich Low_complexity Low_complexity 1 25 0 7 748 343 117 12 33 chr5 21380566 21380639 -131156620 - B2_Mm2 SINE B2 -95 121 47 7 748 912 110 55 0 chr5 21380684 21380830 -131156429 - B2_Mm1t SINE B2 -39 154 1 7 748 614 295 126 48 chr5 21381500 21381959 -131155300 + LTR40a LTR ERVL 3 497 -22 7 748 305 333 0 0 chr5 21382108 21382210 -131155049 + Arthur1 DNA Tip100 796 897 -3050 7 748 240 231 240 0 chr5 21382240 21382361 -131154898 + Arthur1 DNA Tip100 3795 3944 -3 7 748 617 266 27 112 chr5 21383229 21383453 -131153806 + B4 SINE B4 1 205 -87 7 748 186 71 0 0 chr5 21383458 21383486 -131153773 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 7 748 348 88 0 0 chr5 21383486 21383542 -131153717 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 748 252 0 0 0 chr5 21383542 21383569 -131153690 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 748 635 245 84 0 chr5 21384882 21385037 -131152222 - B3A SINE B2 -20 178 11 7 748 294 29 0 0 chr5 21385042 21385077 -131152182 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 748 980 141 0 20 chr5 21385487 21385639 -131151620 - B1_Mur3 SINE Alu 0 149 1 7 748 935 274 91 22 chr5 21385644 21386135 -131151124 - L1M2 LINE L1 -1008 5436 4898 7 748 1355 236 94 0 chr5 21386168 21386549 -131150710 + MTD LTR MaLR 3 419 0 7 748 1485 234 133 68 chr5 21386549 21387605 -131149654 + MTD-int LTR MaLR 1 1258 0 7 748 772 251 219 10 chr5 21387605 21387911 -131149348 + MTD LTR MaLR 1 370 -51 7 748 508 193 56 14 chr5 21387948 21388090 -131149169 - L1M2 LINE L1 -1309 4834 4687 7 748 584 256 26 26 chr5 21388245 21388434 -131148825 - ORR1E LTR MaLR -165 194 6 7 748 421 295 111 41 chr5 21388597 21389335 -131147924 - L1M5 LINE L1 -514 5665 4858 7 748 243 170 0 0 chr5 21389349 21389396 -131147863 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 748 327 298 0 104 chr5 21389458 21389593 -131147666 - B4A SINE B4 -171 121 1 7 748 426 306 83 32 chr5 21389594 21389847 -131147412 - L1M5 LINE L1 -1332 4814 4549 7 748 381 279 90 80 chr5 21389948 21390236 -131147023 + B4A SINE B4 2 292 0 7 748 546 91 0 0 chr5 21391906 21391983 -131145276 + (TA)n Simple_repeat Simple_repeat 2 78 0 7 748 271 200 147 0 chr5 21392140 21392215 -131145044 - PB1D10 SINE Alu -10 107 22 7 748 324 0 0 0 chr5 21392841 21392877 -131144382 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 748 22 0 0 0 chr5 21394500 21394522 -131142737 + AT_rich Low_complexity Low_complexity 1 22 0 7 748 243 0 0 0 chr5 21394690 21394717 -131142542 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 748 1155 50 0 0 chr5 21394717 21394856 -131142403 - B1_Mus2 SINE Alu -8 139 1 7 748 330 67 0 0 chr5 21399490 21399535 -131137724 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 748 335 299 147 17 chr5 21402909 21403086 -131134173 + MER2 DNA MER2_type 58 257 -88 7 748 202 222 22 0 chr5 21403516 21403561 -131133698 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 748 939 258 43 7 chr5 21403569 21403850 -131133409 - B4A SINE B4 0 292 2 7 748 185 287 81 0 chr5 21406119 21406206 -131131053 + MIRb SINE MIR 81 174 -94 7 748 655 298 70 19 chr5 21406825 21407095 -131130164 - B4 SINE B4 -8 284 1 7 748 255 31 0 0 chr5 21407879 21407911 -131129348 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 748 1126 172 39 0 chr5 21408336 21408539 -131128720 + URR1B DNA MER1_type 8 218 -7 7 748 714 242 93 0 chr5 21408873 21409067 -131128192 - B3 SINE B2 0 216 5 7 748 311 209 164 26 chr5 21409253 21409405 -131127854 + Lx9 LINE L1 7457 7629 -15 7 748 439 292 65 37 chr5 21409591 21409808 -131127451 + Lx8 LINE L1 7249 7471 -2 7 748 1140 58 0 7 chr5 21411226 21411366 -131125893 + B1_Mus1 SINE Alu 1 139 -9 7 748 315 0 0 0 chr5 21411366 21411401 -131125858 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 748 1347 79 0 0 chr5 21411995 21412262 -131124997 + (TGAG)n Simple_repeat Simple_repeat 1 267 0 7 748 608 184 58 14 chr5 21412279 21412417 -131124842 + RSINE1 SINE B4 3 146 -19 7 748 1269 77 0 0 chr5 21412419 21412881 -131124378 + (CA)n Simple_repeat Simple_repeat 1 462 0 7 748 198 265 0 0 chr5 21413160 21413228 -131124031 + GA-rich Low_complexity Low_complexity 2 69 0 7 748 648 218 0 0 chr5 21413234 21413413 -131123846 + G-rich Low_complexity Low_complexity 1 179 0 7 748 1371 76 11 21 chr5 21413579 21413767 -131123492 + B2_Mm2 SINE B2 2 187 -8 7 748 540 299 37 26 chr5 21413767 21413956 -131123303 - B3A SINE B2 -7 191 1 7 748 21 0 0 0 chr5 21413963 21413984 -131123275 + AT_rich Low_complexity Low_complexity 1 21 0 7 748 280 292 0 68 chr5 21414599 21414790 -131122469 + G-rich Low_complexity Low_complexity 2 179 0 7 748 282 289 0 67 chr5 21414873 21415051 -131122208 + G-rich Low_complexity Low_complexity 2 167 0 7 748 227 339 6 34 chr5 21415069 21415246 -131122013 + G-rich Low_complexity Low_complexity 2 173 0 7 748 305 296 0 63 chr5 21415270 21415461 -131121798 + G-rich Low_complexity Low_complexity 2 180 0 7 748 1180 62 0 0 chr5 21416262 21416408 -131120851 + B1_Mus2 SINE Alu 2 147 0 7 748 1165 43 7 0 chr5 21417046 21417185 -131120074 + B1_Mm SINE Alu 1 140 -7 7 748 207 0 0 0 chr5 21417190 21417213 -131120046 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 748 219 169 51 0 chr5 21417304 21417363 -131119896 + (TTTAA)n Simple_repeat Simple_repeat 3 64 0 7 748 496 85 160 0 chr5 21417442 21417548 -131119711 + L1_Mus3 LINE L1 6516 6638 0 7 748 1075 175 70 0 chr5 21417801 21418001 -131119258 - B3 SINE B2 -1 215 2 7 748 38 39 0 0 chr5 21418051 21418103 -131119156 + AT_rich Low_complexity Low_complexity 1 52 0 7 748 821 161 0 7 chr5 21418206 21418344 -131118915 - B1_Mur2 SINE Alu 0 149 13 7 748 375 223 9 97 chr5 21418251 21418365 -131118894 - MT2B LTR ERVL -343 258 155 7 748 244 206 149 47 chr5 21418437 21418544 -131118715 + Lx8 LINE L1 7335 7452 -21 7 748 432 0 0 0 chr5 21418597 21418645 -131118614 + (TC)n Simple_repeat Simple_repeat 2 49 0 7 748 26 30 0 0 chr5 21419383 21419416 -131117843 + AT_rich Low_complexity Low_complexity 1 33 0 7 748 231 222 95 0 chr5 21420148 21420211 -131117048 - B1F SINE Alu 0 149 81 7 748 388 215 68 97 chr5 21420597 21420700 -131116559 + PB1D9 SINE Alu 1 100 -20 7 748 360 94 0 0 chr5 21421037 21421090 -131116169 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 748 276 394 0 0 chr5 21421420 21421590 -131115669 + C-rich Low_complexity Low_complexity 6 175 0 7 748 396 286 70 16 chr5 21421680 21421909 -131115350 - L1MA4 LINE L1 -1484 5989 5741 7 748 408 212 24 0 chr5 21421915 21422000 -131115259 - B3 SINE B2 -11 205 119 7 748 824 290 25 64 chr5 21422014 21422269 -131114990 - L1MA4 LINE L1 -188 5692 5444 7 748 638 25 12 0 chr5 21422269 21422349 -131114910 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 7 748 572 284 51 6 chr5 21422350 21422506 -131114753 - RSINE1 SINE B4 -1 164 2 7 748 824 290 25 64 chr5 21422506 21422683 -131114576 - L1MA4 LINE L1 -437 5443 5275 7 748 297 266 57 0 chr5 21423040 21423164 -131114095 + L1ME3 LINE L1 6018 6148 -14 7 748 273 57 0 0 chr5 21423170 21423205 -131114054 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 748 221 83 28 0 chr5 21423257 21423293 -131113966 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 748 315 253 24 0 chr5 21423633 21423730 -131113529 - RSINE1 SINE B4 -180 112 9 7 748 577 325 0 25 chr5 21423809 21424008 -131113251 - B3A SINE B2 -4 194 1 7 748 688 215 20 14 chr5 21425744 21425890 -131111369 - B1_Mur1 SINE Alu -1 148 2 7 748 469 291 9 9 chr5 21426576 21426687 -131110572 - PB1D7 SINE Alu -9 111 1 7 748 1386 100 6 0 chr5 21426717 21427065 -131110194 + (TCCA)n Simple_repeat Simple_repeat 1 349 0 7 748 629 259 14 0 chr5 21427098 21427245 -131110014 - B1F SINE Alu 0 149 1 7 748 392 182 264 0 chr5 21427542 21427652 -131109607 + ID_B1 SINE B4 86 224 0 7 748 4169 71 38 0 chr5 21427818 21428369 -131108890 - Lx3_Mus LINE L1 0 7009 6438 7 748 302 67 22 0 chr5 21428614 21428659 -131108600 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 7 748 186 143 0 0 chr5 21428663 21428698 -131108561 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 7 748 440 272 29 0 chr5 21428722 21428825 -131108434 - B1F1 SINE Alu -39 110 5 7 748 22 0 0 0 chr5 21428837 21428859 -131108400 + AT_rich Low_complexity Low_complexity 1 22 0 7 748 28 61 0 0 chr5 21430069 21430118 -131107141 + AT_rich Low_complexity Low_complexity 1 49 0 7 748 456 211 0 0 chr5 21430634 21430729 -131106530 + B1F SINE Alu 39 133 -16 8 748 312 48 0 0 chr5 21431377 21431419 -131105840 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 748 1111 167 128 27 chr5 21431435 21431693 -131105566 - B4A SINE B4 -8 284 1 8 748 211 163 70 0 chr5 21432642 21432685 -131104574 - ID4_ SINE ID -28 55 10 8 748 226 292 0 0 chr5 21433067 21433132 -131104127 - B4A SINE B4 -8 284 220 8 748 754 278 131 20 chr5 21433192 21433651 -131103608 - Lx8 LINE L1 -2 7471 6962 8 748 227 260 143 9 chr5 21433695 21433800 -131103459 - PB1 SINE Alu -5 122 4 8 748 735 163 8 0 chr5 21435545 21435668 -131101591 - B3 SINE B2 -92 124 1 8 748 25 0 0 0 chr5 21435678 21435703 -131101556 + AT_rich Low_complexity Low_complexity 1 25 0 8 748 25 0 0 0 chr5 21435764 21435789 -131101470 + AT_rich Low_complexity Low_complexity 1 25 0 8 748 719 240 71 98 chr5 21435834 21436130 -131101129 - B4A SINE B4 -4 288 1 8 748 579 71 0 30 chr5 21436307 21436408 -131100851 + (TA)n Simple_repeat Simple_repeat 2 99 0 8 748 204 158 0 0 chr5 21437958 21437996 -131099263 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 748 234 0 0 0 chr5 21439298 21439324 -131097935 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 8 748 360 0 0 0 chr5 21439898 21439938 -131097321 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 748 202 288 50 3 chr5 21441383 21441491 -131095768 + MIRc SINE MIR 97 203 -59 8 748 291 71 0 0 chr5 21442098 21442140 -131095119 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 748 368 273 75 20 chr5 21442829 21442975 -131094284 + L1MC5 LINE L1 7653 7806 -155 8 748 885 286 65 7 chr5 21444783 21445058 -131092201 - B4 SINE B4 -1 291 1 8 748 324 102 0 0 chr5 21445814 21445863 -131091396 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 8 748 200 256 0 0 chr5 21446754 21446797 -131090462 + (CCTG)n Simple_repeat Simple_repeat 2 44 0 8 748 456 188 16 8 chr5 21448753 21448882 -131088377 + (TCCA)n Simple_repeat Simple_repeat 3 132 0 8 748 543 222 154 0 chr5 21448884 21449001 -131088258 - B1_Mur3 SINE Alu -12 137 3 8 748 21 36 0 0 chr5 21449285 21449313 -131087946 + AT_rich Low_complexity Low_complexity 1 28 0 8 748 547 241 3 6 chr5 21449405 21449530 -131087729 - B3A SINE B2 -70 125 3 8 748 322 331 32 19 chr5 21450000 21450157 -131087102 - MER5B DNA MER1_type -3 175 17 8 748 1023 153 21 21 chr5 21450504 21450697 -131086562 - B2_Mm2 SINE B2 -1 194 2 8 748 953 279 36 71 chr5 21451094 21451487 -131085772 + MTE2a LTR MaLR 1 379 0 8 748 270 271 43 0 chr5 21452434 21452504 -131084755 - ID_B1 SINE B4 -84 140 68 8 748 390 42 0 0 chr5 21452704 21452752 -131084507 + (TATG)n Simple_repeat Simple_repeat 4 51 0 8 748 698 296 119 4 chr5 21452753 21453014 -131084245 - B4A SINE B4 0 292 2 8 748 263 186 159 23 chr5 21454065 21454153 -131083106 + MIR3 SINE MIR 74 173 -35 8 748 241 254 17 0 chr5 21457085 21457144 -131080115 + (TATG)n Simple_repeat Simple_repeat 3 62 0 8 748 21 0 0 0 chr5 21459299 21459320 -131077939 + AT_rich Low_complexity Low_complexity 1 21 0 8 748 616 314 38 19 chr5 21459475 21459741 -131077518 - L1MB5 LINE L1 -122 6052 5782 8 748 29 78 0 0 chr5 21459752 21459816 -131077443 + AT_rich Low_complexity Low_complexity 1 64 0 8 748 560 282 155 10 chr5 21460163 21460467 -131076792 + Lx8 LINE L1 7089 7436 -37 8 748 568 317 142 6 chr5 21461423 21461775 -131075484 - L1MB5 LINE L1 -79 6095 5696 8 748 344 294 69 0 chr5 21462116 21462218 -131075041 + B1F2 SINE Alu 2 110 -39 8 748 225 336 106 8 chr5 21462218 21462231 -131075028 + B4 SINE B4 122 213 -79 8 748 474 18 0 0 chr5 21463469 21463524 -131073735 + (CA)n Simple_repeat Simple_repeat 1 55 0 8 748 642 286 165 25 chr5 21464228 21464544 -131072715 - MLT1A0 LTR MaLR -1 364 5 8 748 1133 196 9 9 chr5 21465261 21465482 -131071777 + URR1B DNA MER1_type 2 222 -3 8 748 22 0 0 0 chr5 21466725 21466747 -131070512 + AT_rich Low_complexity Low_complexity 1 22 0 8 748 259 290 98 49 chr5 21466914 21467077 -131070182 - L1MA9 LINE L1 -159 6153 5983 8 748 247 113 0 36 chr5 21467078 21467133 -131070126 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 8 748 26882 130 31 16 chr5 21467596 21469022 -131068237 + Lx LINE L1 358 1717 -4166 8 748 1910 80 3 87 chr5 21469022 21469322 -131067937 + L1_Mus2 LINE L1 6292 6566 0 8 748 26882 146 13 36 chr5 21469322 21472268 -131064991 + Lx LINE L1 1718 4648 -1235 8 748 1398 59 27 11 chr5 21472268 21472427 -131064832 + B2_Mm1t SINE B2 2 160 -33 8 748 279 0 0 0 chr5 21472427 21472458 -131064801 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 8 748 1398 59 27 11 chr5 21472458 21472486 -131064773 + B2_Mm1t SINE B2 161 191 -2 8 748 26882 133 39 26 chr5 21472486 21474438 -131062821 + Lx LINE L1 4649 6653 -1 8 748 418 178 0 62 chr5 21475485 21475677 -131061582 + (CAGT)n Simple_repeat Simple_repeat 1 180 0 8 748 1453 64 21 5 chr5 21475899 21476087 -131061172 - B2_Mm1t SINE B2 -1 192 2 8 748 652 248 150 22 chr5 21476225 21476452 -131060807 + MTE2b LTR MaLR 1 256 -123 8 748 36 0 0 0 chr5 21476771 21476807 -131060452 + AT_rich Low_complexity Low_complexity 1 36 0 8 748 212 133 89 0 chr5 21477321 21477366 -131059893 + A-rich Low_complexity Low_complexity 2 50 0 8 748 391 297 30 0 chr5 21477378 21477479 -131059780 + B1F SINE Alu 12 115 -34 8 748 342 0 0 0 chr5 21478104 21478142 -131059117 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 8 748 315 75 60 0 chr5 21479401 21479468 -131057791 + (TTTTTG)n Simple_repeat Simple_repeat 6 76 0 8 748 198 0 0 0 chr5 21479819 21479841 -131057418 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 748 451 212 27 7 chr5 21479842 21479989 -131057270 + GA-rich Low_complexity Low_complexity 2 151 0 8 748 240 35 0 0 chr5 21481907 21481936 -131055323 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 8 748 209 33 33 0 chr5 21482496 21482526 -131054733 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 748 1015 225 119 32 chr5 21483040 21483143 -131054116 + MTEb LTR MaLR 5 105 -274 8 748 3268 58 2 0 chr5 21483143 21483542 -131053717 + MTB LTR MaLR 1 400 0 8 748 1015 225 119 32 chr5 21483542 21483783 -131053476 + MTEb LTR MaLR 106 379 0 8 748 254 240 58 29 chr5 21484301 21484404 -131052855 - LTR33A_ LTR ERVL -18 513 408 8 748 275 193 0 12 chr5 21486786 21486870 -131050389 + (TA)n Simple_repeat Simple_repeat 2 84 0 8 748 254 270 99 20 chr5 21486965 21487116 -131050143 + Tigger14a DNA MER2_type 157 319 -5 8 748 236 169 0 78 chr5 21487629 21487706 -131049553 + GA-rich Low_complexity Low_complexity 2 72 0 8 748 509 311 41 30 chr5 21487791 21487847 -131049412 + MLT1F1 LTR MaLR 1 54 -515 8 748 994 107 63 58 chr5 21487847 21488036 -131049223 + B2_Mm2 SINE B2 2 191 -4 8 748 509 311 41 30 chr5 21488036 21488148 -131049111 + MLT1F1 LTR MaLR 55 171 -398 8 748 1149 68 7 0 chr5 21488155 21488301 -131048958 + B1_Mus1 SINE Alu 1 147 -1 8 748 305 328 59 15 chr5 21488602 21488738 -131048521 + MLT1F2 LTR MaLR 403 544 -16 8 748 314 290 72 8 chr5 21489873 21489998 -131047261 + MLT1F1 LTR MaLR 279 411 0 8 748 1583 50 30 0 chr5 21490062 21490261 -131046998 + L1_Mus1 LINE L1 6363 6567 0 8 748 1063 139 94 21 chr5 21491378 21491569 -131045690 + B3 SINE B2 1 205 -11 8 748 472 309 7 0 chr5 21493097 21493236 -131044023 + ID_B1 SINE B4 85 224 0 8 748 460 282 92 6 chr5 21493337 21493501 -131043758 - B3A SINE B2 -18 180 3 8 748 191 302 80 54 chr5 21494168 21494280 -131042979 + MIRb SINE MIR 117 231 -37 8 93 1934 182 118 7 chr5 21495780 21496212 -131041047 + Lx9 LINE L1 6920 7399 -245 8 749 1047 158 10 10 chr5 21496226 21496424 -131040835 + RLTR1 LTR ERV1 427 624 0 8 749 639 159 0 0 chr5 21497252 21497365 -131039894 + CT-rich Low_complexity Low_complexity 2 114 0 8 749 1040 96 0 0 chr5 21497370 21497506 -131039753 - B1_Mus1 SINE Alu -8 140 5 8 749 324 48 0 0 chr5 21497553 21497595 -131039664 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 8 749 308 279 95 47 chr5 21497709 21497878 -131039381 + MLT1H-int LTR MaLR 931 1107 -302 8 749 233 355 91 0 chr5 21498258 21498379 -131038880 - MLT1I LTR MaLR 0 411 280 8 749 9846 49 0 0 chr5 21498819 21500000 -131037259 + L1_Mm LINE L1 4670 5850 -33 8 749 5562 57 28 0 chr5 21500000 21500714 -131036545 + L1Md_F3 LINE L1 5851 6584 0 1 749 194 282 39 0 chr5 21500938 21501016 -131036243 + L2a LINE L2 3342 3422 -4 2 749 208 254 0 0 chr5 21502370 21502425 -131034834 + L2c LINE L2 3257 3311 -76 3 749 333 150 33 0 chr5 21504802 21504862 -131032397 - B3 SINE B2 0 216 155 4 749 623 248 135 39 chr5 21506237 21506497 -131030762 - B4 SINE B4 -6 286 2 5 749 27 49 0 0 chr5 21506566 21506607 -131030652 + AT_rich Low_complexity Low_complexity 1 41 0 6 749 21 0 0 0 chr5 21506953 21506974 -131030285 + AT_rich Low_complexity Low_complexity 1 21 0 7 749 440 298 7 22 chr5 21507007 21507290 -131029969 + (TG)n Simple_repeat Simple_repeat 1 278 0 8 749 2303 174 20 66 chr5 21507292 21507819 -131029440 - RLTR31A_Mm LTR ERVK 0 561 1 9 749 247 254 0 0 chr5 21507822 21507881 -131029378 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 749 884 297 24 36 chr5 21507895 21508143 -131029116 - B4 SINE B4 0 292 48 1 749 28 0 0 0 chr5 21508183 21508211 -131029048 + AT_rich Low_complexity Low_complexity 1 28 0 1 749 299 370 40 10 chr5 21508220 21508321 -131028938 - B1F1 SINE Alu -45 104 1 1 749 1035 145 320 0 chr5 21508358 21508617 -131028642 + ORR1C1 LTR MaLR 37 378 0 1 749 1255 55 0 0 chr5 21508684 21508830 -131028429 - B1_Mm SINE Alu 0 147 2 1 749 300 287 79 0 chr5 21509558 21509659 -131027600 - PB1D9 SINE Alu -11 109 1 1 749 622 313 39 34 chr5 21510451 21510656 -131026603 - B4 SINE B4 -4 288 83 1 749 27 29 0 0 chr5 21510656 21510690 -131026569 + AT_rich Low_complexity Low_complexity 1 34 0 1 749 871 136 0 0 chr5 21510698 21510823 -131026436 - B1_Mur1 SINE Alu -8 141 17 1 749 632 233 41 127 chr5 21510823 21510850 -131026409 - B4 SINE B4 -74 218 84 2 749 225 0 0 0 chr5 21510850 21510875 -131026384 + (TTTAG)n Simple_repeat Simple_repeat 2 26 0 2 749 632 233 41 127 chr5 21510875 21510943 -131026316 - B4 SINE B4 -209 83 17 2 749 213 242 29 29 chr5 21510883 21510951 -131026308 - ID4_ SINE ID -6 77 10 2 749 314 304 0 57 chr5 21511004 21511126 -131026133 + MIRb SINE MIR 115 229 -39 2 749 216 290 0 16 chr5 21512437 21512500 -131024759 + (TATG)n Simple_repeat Simple_repeat 2 63 0 2 749 259 264 96 48 chr5 21514086 21514218 -131023041 - MIR SINE MIR -99 177 34 2 749 363 317 77 18 chr5 21515285 21515455 -131021804 - MIR SINE MIR -75 187 8 2 749 337 188 34 120 chr5 21517776 21517951 -131019308 + HAL1-2a_MD LINE L1 2347 2506 -518 2 749 299 172 31 39 chr5 21517998 21518125 -131019134 + (CACAA)n Simple_repeat Simple_repeat 2 127 0 2 749 263 171 67 0 chr5 21518129 21518234 -131019025 + (CAA)n Simple_repeat Simple_repeat 2 113 0 2 749 2317 129 46 35 chr5 21518659 21519029 -131018230 + ORR1C1 LTR MaLR 1 374 -4 3 749 316 333 30 30 chr5 21519315 21519479 -131017780 + MIR3 SINE MIR 25 188 -20 3 749 783 191 0 0 chr5 21519930 21520092 -131017167 + (TCCA)n Simple_repeat Simple_repeat 2 163 0 3 749 788 204 94 31 chr5 21521568 21521760 -131015499 + B3 SINE B2 2 205 -11 3 749 219 257 28 28 chr5 21522422 21522494 -131014765 - L3 LINE CR1 -2 4487 4416 3 749 4159 57 0 0 chr5 21523219 21523693 -131013566 + L1_Mus1 LINE L1 6094 6567 0 3 749 335 122 0 39 chr5 21523704 21523781 -131013478 + A-rich Low_complexity Low_complexity 1 74 0 3 749 29 47 0 0 chr5 21524223 21524266 -131012993 + AT_rich Low_complexity Low_complexity 1 43 0 3 749 967 93 0 45 chr5 21526271 21526428 -131010831 - L1Md_F2 LINE L1 0 6582 6433 3 749 288 0 0 0 chr5 21526819 21526851 -131010408 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 749 324 0 0 0 chr5 21526854 21526890 -131010369 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 749 378 0 0 0 chr5 21527401 21527443 -131009816 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 749 244 204 0 18 chr5 21527690 21527745 -131009514 - Lx7 LINE L1 -16 7680 7627 4 749 678 109 0 0 chr5 21530867 21530968 -131006291 + (TG)n Simple_repeat Simple_repeat 2 102 0 4 749 431 253 150 16 chr5 21531514 21531707 -131005552 - ORSL-2b DNA Tip100 -260 248 30 4 749 33 66 0 0 chr5 21532405 21532466 -131004793 + AT_rich Low_complexity Low_complexity 1 61 0 4 749 393 22 0 0 chr5 21532510 21532556 -131004703 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 749 263 200 0 0 chr5 21532727 21532777 -131004482 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 749 216 97 0 0 chr5 21532870 21532901 -131004358 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 4 749 302 185 30 30 chr5 21532926 21532993 -131004266 - ID4 SINE ID -15 68 2 4 749 565 250 118 54 chr5 21533015 21533201 -131004058 - B3A SINE B2 0 198 1 5 749 227 386 2 26 chr5 21533215 21533307 -131003952 - AluF_3 SINE Alu -102 209 137 5 749 466 282 0 16 chr5 21535156 21535282 -131001977 + Lx9 LINE L1 5839 5962 -1682 5 749 387 0 0 0 chr5 21535436 21535479 -131001780 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 749 2304 283 66 23 chr5 21535484 21536129 -131001130 + Lx9 LINE L1 6370 7036 -608 5 749 1598 52 11 0 chr5 21536129 21536320 -131000939 + B2_Mm1t SINE B2 1 193 0 5 749 2304 283 66 23 chr5 21536320 21536466 -131000793 + Lx9 LINE L1 7037 7195 -449 5 749 3856 114 27 9 chr5 21536561 21537109 -131000150 + Lx4A LINE L1 6500 7057 -1 5 749 405 0 0 0 chr5 21538017 21538062 -130999197 + (CAG)n Simple_repeat Simple_repeat 1 45 0 5 749 22 35 0 0 chr5 21538795 21538824 -130998435 + AT_rich Low_complexity Low_complexity 1 29 0 5 749 452 283 18 0 chr5 21539572 21539685 -130997574 - ID_B1 SINE B4 -16 208 94 5 749 342 0 0 0 chr5 21541459 21541497 -130995762 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 749 23 0 0 0 chr5 21541534 21541557 -130995702 + AT_rich Low_complexity Low_complexity 1 23 0 6 749 28 0 0 0 chr5 21541702 21541730 -130995529 + AT_rich Low_complexity Low_complexity 1 28 0 6 749 243 0 0 0 chr5 21541895 21541922 -130995337 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6 749 952 84 112 0 chr5 21541922 21542065 -130995194 - B2_Mm1t SINE B2 -33 160 2 6 749 21 36 0 0 chr5 21542224 21542252 -130995007 + AT_rich Low_complexity Low_complexity 1 28 0 6 749 197 336 58 41 chr5 21542385 21542506 -130994753 + MIR SINE MIR 32 154 -108 6 749 21 36 0 0 chr5 21543310 21543338 -130993921 + AT_rich Low_complexity Low_complexity 1 28 0 6 749 22 35 0 0 chr5 21544994 21545023 -130992236 + AT_rich Low_complexity Low_complexity 1 29 0 6 749 316 0 22 22 chr5 21546456 21546501 -130990758 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 749 277 225 38 29 chr5 21546506 21546611 -130990648 + (GGGTG)n Simple_repeat Simple_repeat 4 109 0 6 749 638 162 0 9 chr5 21546906 21547012 -130990247 - B1_Mur3 SINE Alu -12 137 33 7 749 578 290 28 40 chr5 21548975 21549151 -130988108 + B4A SINE B4 8 181 -111 7 749 222 128 0 0 chr5 21549527 21549566 -130987693 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 749 540 282 83 41 chr5 21550258 21550524 -130986735 + B4A SINE B4 2 278 -14 7 749 218 156 0 22 chr5 21550587 21550633 -130986626 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 749 279 0 0 0 chr5 21552414 21552445 -130984814 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 749 21 0 0 0 chr5 21552746 21552767 -130984492 + AT_rich Low_complexity Low_complexity 1 21 0 7 749 24 0 0 0 chr5 21554718 21554742 -130982517 + AT_rich Low_complexity Low_complexity 1 24 0 7 749 894 277 20 0 chr5 21556301 21556503 -130980756 - B4A SINE B4 -86 206 1 7 749 667 297 126 0 chr5 21557554 21557729 -130979530 - B4 SINE B4 -8 284 88 7 749 2983 230 25 62 chr5 21557767 21558770 -130978489 - L1_Rod LINE L1 -1050 4797 3832 8 749 192 40 0 0 chr5 21561614 21561639 -130975620 + (GCTG)n Simple_repeat Simple_repeat 4 28 0 8 749 216 91 68 0 chr5 21561782 21561826 -130975433 + A-rich Low_complexity Low_complexity 3 49 0 8 749 387 277 0 0 chr5 21561966 21562114 -130975145 + (TG)n Simple_repeat Simple_repeat 1 148 0 8 749 1029 284 31 0 chr5 21562146 21562407 -130974852 - B4A SINE B4 -22 270 2 8 749 374 257 0 107 chr5 21562430 21562552 -130974707 + Tigger7 DNA MER2_type 2342 2450 -41 8 749 310 323 148 27 chr5 21566817 21567040 -130970219 - MIR SINE MIR -11 251 2 8 749 228 340 76 13 chr5 21568428 21568586 -130968673 + MER105 DNA DNA 1 168 -36 8 749 639 207 0 0 chr5 21568623 21568763 -130968496 + (TA)n Simple_repeat Simple_repeat 2 141 0 8 749 309 159 0 0 chr5 21568762 21568825 -130968434 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 749 497 289 42 61 chr5 21569226 21569440 -130967819 + B4A SINE B4 27 236 -56 9 749 497 268 144 40 chr5 21569633 21569835 -130967424 - ID_B1 SINE B4 0 224 2 9 749 2881 52 5 19 chr5 21569857 21570233 -130967026 - L1_Mus1 LINE L1 0 6567 6197 9 749 310 294 53 35 chr5 21570239 21570408 -130966851 - L1M5 LINE L1 -1065 5081 4910 9 749 291 251 17 34 chr5 21570487 21570664 -130966595 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 9 749 33549 67 3 5 chr5 21570843 21572540 -130964719 - L1Md_F2 LINE L1 -14 6568 4871 9 749 3255 50 7 10 chr5 21572540 21572948 -130964311 + L1Md_F3 LINE L1 6178 6584 0 9 749 33549 99 22 21 chr5 21572948 21577597 -130959662 - L1Md_F2 LINE L1 -1013 4870 217 9 749 261 278 178 0 chr5 21577941 21578031 -130959228 + ID_B1 SINE B4 71 176 -48 9 749 289 233 167 0 chr5 21577955 21578045 -130959214 + PB1D10 SINE Alu 6 110 -7 9 749 274 252 248 16 chr5 21578385 21578510 -130958749 - RSINE1 SINE B4 -10 155 2 9 749 24 53 0 0 chr5 21579788 21579826 -130957433 + AT_rich Low_complexity Low_complexity 1 38 0 1 749 23 0 0 0 chr5 21581425 21581448 -130955811 + AT_rich Low_complexity Low_complexity 1 23 0 1 749 585 300 149 13 chr5 21581809 21582204 -130955055 + Lx8 LINE L1 6345 6792 -681 1 749 931 258 79 36 chr5 21582310 21582588 -130954671 - B4 SINE B4 0 292 3 1 749 545 173 28 8 chr5 21584689 21584947 -130952312 + (TA)n Simple_repeat Simple_repeat 1 263 0 1 749 546 301 116 63 chr5 21585000 21585334 -130951925 - MTE2a LTR MaLR -8 371 22 1 749 312 295 0 0 chr5 21585432 21585510 -130951749 - PB1D10 SINE Alu -2 115 38 1 749 275 164 16 0 chr5 21585565 21585626 -130951633 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 749 214 335 109 91 chr5 21585682 21585912 -130951347 - B4 SINE B4 -22 270 37 1 749 243 0 0 0 chr5 21586255 21586282 -130950977 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 749 1301 102 11 5 chr5 21587688 21587876 -130949383 + B2_Mm2 SINE B2 1 189 -6 1 749 334 305 12 0 chr5 21587891 21587973 -130949286 - RSINE1 SINE B4 0 165 83 1 749 1404 248 60 101 chr5 21588339 21589119 -130948140 + Lx9 LINE L1 6897 7644 0 1 749 1239 48 0 0 chr5 21590118 21590265 -130946994 + B1_Mus2 SINE Alu 1 147 0 1 749 198 0 0 0 chr5 21590269 21590291 -130946968 + (A)n Simple_repeat Simple_repeat 1 22 0 1 749 36237 30 0 0 chr5 21590610 21597033 -130940226 - L1Md_T LINE L1 0 6585 66 1 749 185 215 28 84 chr5 21597825 21597896 -130939363 + MIRc SINE MIR 100 166 -102 1 749 23 0 0 0 chr5 21598129 21598152 -130939107 + AT_rich Low_complexity Low_complexity 1 23 0 1 749 197 305 0 0 chr5 21600324 21600383 -130936876 + MIRc SINE MIR 100 158 -110 1 749 353 320 97 35 chr5 21600937 21601164 -130936095 - AmnSINE1 SINE SINE -156 419 179 1 749 354 123 0 0 chr5 21602324 21602381 -130934878 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 749 5011 47 8 2 chr5 21603452 21604070 -130933189 + L1Md_F2 LINE L1 5960 6581 -1 1 749 377 302 115 14 chr5 21604094 21604312 -130932947 + L1M5 LINE L1 3761 4000 -2146 1 749 402 21 0 0 chr5 21604314 21604361 -130932898 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 749 239 169 23 193 chr5 21604751 21604839 -130932420 + ID4_ SINE ID 2 74 -9 1 749 236 338 40 0 chr5 21606555 21606629 -130930630 + B1F SINE Alu 39 115 -34 1 749 1650 140 45 86 chr5 21606633 21606969 -130930290 + ORR1A3 LTR MaLR 5 326 0 1 749 254 309 0 80 chr5 21607017 21607105 -130930154 + ID4 SINE ID 2 82 -1 1 749 1254 113 92 19 chr5 21607915 21608122 -130929137 - URR1A DNA MER1_type 0 226 5 1 749 422 293 133 33 chr5 21608266 21608446 -130928813 - MLT1A0 LTR MaLR -166 199 2 1 749 884 83 8 0 chr5 21608732 21608852 -130928407 - B1_Mus2 SINE Alu -22 125 5 1 749 400 223 25 82 chr5 21608755 21608877 -130928382 - MT2B LTR ERVL -344 257 143 1 749 289 185 25 16 chr5 21609685 21609806 -130927453 + (TATATG)n Simple_repeat Simple_repeat 4 125 0 1 749 416 223 82 56 chr5 21614502 21614628 -130922631 + B1_Mur2 SINE Alu 6 139 -10 1 749 468 0 0 0 chr5 21614629 21614681 -130922578 + (CAA)n Simple_repeat Simple_repeat 3 54 0 1 749 999 17 0 0 chr5 21615085 21615204 -130922055 - B1_Mus1 SINE Alu 0 148 30 1 749 2896 88 135 2 chr5 21615276 21615698 -130921561 - L1_Mus3 LINE L1 0 6638 6161 1 749 1457 254 30 32 chr5 21616374 21616744 -130920515 + MTEa LTR MaLR 3 371 -8 1 749 2139 180 71 3 chr5 21618531 21618898 -130918361 + ORR1B1 LTR MaLR 3 394 0 1 749 623 274 238 17 chr5 21619483 21619832 -130917427 + Arthur1 DNA Tip100 10 435 -3512 1 749 684 248 198 70 chr5 21619810 21620048 -130917211 + Arthur1 DNA Tip100 3325 3613 -334 1 749 5097 39 10 2 chr5 21620048 21620635 -130916624 - L1Md_F3 LINE L1 -1 6583 5992 1 749 684 248 198 70 chr5 21620635 21620942 -130916317 + Arthur1 DNA Tip100 3614 3940 -7 1 749 1040 142 0 13 chr5 21621171 21621321 -130915938 - B1_Mur2 SINE Alu -1 148 1 1 749 401 19 58 0 chr5 21621539 21621591 -130915668 + B1_Mm SINE Alu 85 139 -8 1 749 350 21 0 21 chr5 21621591 21621639 -130915620 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1 749 684 257 32 27 chr5 21622168 21622388 -130914871 - MER46C DNA MER2_type -56 282 62 1 749 29 0 0 0 chr5 21622433 21622462 -130914797 + AT_rich Low_complexity Low_complexity 1 29 0 1 749 297 167 0 0 chr5 21622577 21622631 -130914628 + T-rich Low_complexity Low_complexity 1 54 0 1 750 21 36 0 0 chr5 21627391 21627419 -130909840 + AT_rich Low_complexity Low_complexity 1 28 0 1 750 369 0 0 0 chr5 21628250 21628291 -130908968 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 750 417 307 78 85 chr5 21628310 21628591 -130908668 - B4A SINE B4 -12 280 2 1 750 7484 55 0 2 chr5 21628651 21629663 -130907596 - L1Md_F2 LINE L1 -619 5963 4955 1 750 5314 68 9 9 chr5 21629663 21630329 -130906930 + L1Md_F2 LINE L1 5914 6579 -3 1 750 633 297 253 9 chr5 21630477 21630813 -130906446 - MTD LTR MaLR -1 418 1 1 750 396 0 0 0 chr5 21630880 21630924 -130906335 + (TAA)n Simple_repeat Simple_repeat 1 44 0 1 750 24 32 0 0 chr5 21632933 21632964 -130904295 + AT_rich Low_complexity Low_complexity 1 31 0 1 750 320 306 111 0 chr5 21634882 21634990 -130902269 + RSINE1 SINE B4 24 143 -22 1 750 798 306 46 32 chr5 21636406 21636689 -130900570 + B4A SINE B4 2 288 -4 1 750 273 271 28 14 chr5 21637108 21637179 -130900080 + ID4 SINE ID 8 79 -4 1 750 830 209 7 0 chr5 21638252 21638391 -130898868 + B1_Mus2 SINE Alu 1 140 -7 1 750 317 24 24 0 chr5 21638395 21638437 -130898822 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 750 2034 93 62 13 chr5 21639490 21639794 -130897465 + Lx LINE L1 6332 6650 -4 1 750 259 390 21 24 chr5 21640650 21640859 -130896400 + MIRc SINE MIR 38 251 -17 1 750 219 143 0 45 chr5 21642113 21642157 -130895102 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 750 706 185 390 0 chr5 21642326 21642472 -130894787 + B3 SINE B2 2 204 -12 1 750 2120 77 0 40 chr5 21642610 21642908 -130894351 + L1_Mus4 LINE L1 6347 6632 -4 1 750 4488 170 40 160 chr5 21642930 21644183 -130893076 - RLTR25A LTR ERVK 0 1103 1 1 750 1251 139 76 9 chr5 21644201 21644412 -130892847 - URR1B DNA MER1_type 0 225 1 1 750 245 364 27 41 chr5 21645381 21645527 -130891732 - MIRb SINE MIR -99 169 26 1 750 249 33 0 0 chr5 21647416 21647446 -130889813 + (CCTG)n Simple_repeat Simple_repeat 2 31 0 1 750 618 213 20 72 chr5 21648369 21648521 -130888738 - B1F1 SINE Alu -5 144 1 1 750 21 0 0 0 chr5 21649185 21649206 -130888053 + AT_rich Low_complexity Low_complexity 1 21 0 1 750 468 305 63 44 chr5 21650445 21650603 -130886656 - RSINE1 SINE B4 -2 163 3 1 750 233 333 15 0 chr5 21650771 21650837 -130886422 - ID2 SINE ID -15 68 2 1 750 180 111 0 0 chr5 21651049 21651076 -130886183 + (TCCC)n Simple_repeat Simple_repeat 2 28 0 1 750 226 316 133 15 chr5 21651545 21651680 -130885579 + MamGypLTR1c LTR Gypsy 649 799 -4 1 750 585 263 164 51 chr5 21652605 21652861 -130884398 + B4A SINE B4 1 285 -7 1 750 205 208 28 0 chr5 21653288 21653360 -130883899 + GA-rich Low_complexity Low_complexity 1 74 0 1 750 354 198 19 19 chr5 21653644 21653736 -130883523 + GA-rich Low_complexity Low_complexity 3 96 0 1 750 225 0 0 0 chr5 21653736 21653761 -130883498 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 1 750 278 149 21 0 chr5 21654600 21654647 -130882612 - ORR1A2 LTR MaLR 0 326 279 1 750 4158 157 26 3 chr5 21654630 21655390 -130881869 - ORR1A2-int LTR MaLR -1014 778 1 1 750 2481 88 22 12 chr5 21655390 21655714 -130881545 - ORR1A2 LTR MaLR 0 327 1 1 750 542 243 184 0 chr5 21656316 21656452 -130880807 + MTD LTR MaLR 18 178 -241 1 750 736 243 145 38 chr5 21656689 21656924 -130880335 + MTD LTR MaLR 146 405 -14 1 750 7098 95 15 7 chr5 21657102 21658053 -130879206 + RMER17B LTR ERVK 1 958 0 1 750 437 276 107 63 chr5 21660054 21660259 -130877000 - MIR SINE MIR -34 228 15 1 750 1692 291 107 73 chr5 21661660 21662251 -130875008 + Charlie5 DNA MER1_type 1199 1829 -795 1 750 412 309 14 29 chr5 21662251 21662391 -130874868 - B1F SINE Alu -11 138 1 1 750 1692 291 107 73 chr5 21662391 21662423 -130874836 + Charlie5 DNA MER1_type 1830 1842 -782 1 750 1140 259 32 11 chr5 21662423 21662708 -130874551 + B4A SINE B4 2 292 0 1 750 1692 291 107 73 chr5 21662708 21663181 -130874078 + Charlie5 DNA MER1_type 1843 2333 -291 1 750 237 191 0 0 chr5 21663210 21663252 -130874007 + Charlie5 DNA MER1_type 2583 2624 0 1 750 306 0 0 0 chr5 21663606 21663640 -130873619 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 750 246 282 11 23 chr5 21664518 21664605 -130872654 + GA-rich Low_complexity Low_complexity 2 87 0 1 750 1303 289 16 5 chr5 21664974 21665343 -130871916 + MTEb LTR MaLR 3 375 -4 1 750 205 220 16 63 chr5 21665480 21665543 -130871716 - MIRc SINE MIR -99 169 110 1 750 396 0 0 0 chr5 21666195 21666239 -130871020 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 750 255 153 15 132 chr5 21667429 21667497 -130869762 - tRNA-Ala-GCY_ tRNA tRNA -14 61 2 1 750 320 309 0 21 chr5 21668220 21668316 -130868943 + ID_B1 SINE B4 84 177 -47 1 750 758 269 147 35 chr5 21669134 21669392 -130867867 - B4A SINE B4 -4 288 2 1 750 529 0 62 0 chr5 21669893 21669974 -130867285 + (CAA)n Simple_repeat Simple_repeat 2 87 0 1 750 417 257 117 7 chr5 21670245 21670390 -130866869 + MER90 LTR ERV1 4 164 -411 1 750 16491 122 33 46 chr5 21671238 21675185 -130862074 + L1_Mus3 LINE L1 2709 6616 -22 1 750 5482 151 48 5 chr5 21675186 21676107 -130861152 + Lx5 LINE L1 5810 6769 -281 1 750 22 0 0 0 chr5 21676126 21676148 -130861111 + AT_rich Low_complexity Low_complexity 1 22 0 1 750 336 175 0 0 chr5 21678321 21678384 -130858875 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 750 393 216 0 0 chr5 21678387 21678461 -130858798 + HAL1-3A_ME LINE L1 1976 2049 -809 1 750 454 300 43 59 chr5 21679354 21679684 -130857575 - Lx8 LINE L1 -279 6024 5678 2 750 373 167 40 0 chr5 21679707 21679833 -130857426 + (CA)n Simple_repeat Simple_repeat 2 132 0 2 750 705 292 46 59 chr5 21679843 21680214 -130857045 + L1M2 LINE L1 5292 5657 -640 2 750 2465 22 4 0 chr5 21680604 21680875 -130856384 + L1_Mus1 LINE L1 6296 6567 0 2 750 476 329 7 7 chr5 21681438 21681579 -130855680 + B1_Mur1 SINE Alu 7 147 -2 2 750 563 289 26 77 chr5 21683273 21683493 -130853766 - B3A SINE B2 -4 212 1 2 750 263 296 13 103 chr5 21683622 21683778 -130853481 - PB1D10 SINE Alu 0 149 22 2 750 34 24 0 0 chr5 21684040 21684081 -130853178 + AT_rich Low_complexity Low_complexity 1 41 0 2 750 887 290 5 0 chr5 21684275 21684482 -130852777 - ID_B1 SINE B4 -14 210 3 2 750 527 259 9 0 chr5 21684914 21685030 -130852229 - MTEb LTR MaLR -262 117 1 2 750 1098 238 157 17 chr5 21685033 21685383 -130851876 - MTEb-int LTR MaLR -14 1566 1168 2 750 378 61 0 0 chr5 21685393 21685442 -130851817 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 750 682 236 54 77 chr5 21685459 21685757 -130851502 + L1MA7 LINE L1 5635 5925 -366 2 750 1752 179 37 37 chr5 21686173 21686527 -130850732 + ORR1B1 LTR MaLR 41 394 0 2 750 618 250 77 6 chr5 21686596 21686765 -130850494 - B3A SINE B2 -13 185 5 2 750 245 329 71 0 chr5 21687163 21687248 -130850011 + RSINE1 SINE B4 68 158 -7 2 750 292 28 0 0 chr5 21687394 21687430 -130849829 - U2 snRNA snRNA -152 36 1 2 750 570 317 88 11 chr5 21688709 21688971 -130848288 + B4A SINE B4 2 283 -9 2 750 517 274 30 30 chr5 21689026 21689195 -130848064 + Lx8 LINE L1 7091 7259 -214 2 750 251 282 9 52 chr5 21689211 21689327 -130847932 + Lx8 LINE L1 7363 7473 0 2 750 305 277 62 49 chr5 21689424 21689568 -130847691 + L1MB7 LINE L1 3492 3637 -2509 2 750 606 279 94 30 chr5 21689568 21689801 -130847458 + MTEb LTR MaLR 130 377 -2 2 750 486 309 121 0 chr5 21689823 21690046 -130847213 + L1MB7 LINE L1 4554 4803 -1343 2 750 565 287 125 39 chr5 21690063 21690129 -130847130 + B4A SINE B4 39 111 -181 2 750 189 0 0 0 chr5 21690129 21690150 -130847109 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 750 565 287 125 39 chr5 21690150 21690315 -130846944 + B4A SINE B4 112 289 -3 2 750 854 293 150 23 chr5 21690328 21690807 -130846452 + L1MB7 LINE L1 5644 6183 -1 2 750 444 253 61 67 chr5 21690817 21690894 -130846365 + B4A SINE B4 2 77 -215 2 750 236 224 29 167 chr5 21690894 21690996 -130846263 + B1F2 SINE Alu 1 88 -61 2 750 281 274 66 0 chr5 21693204 21693310 -130843949 - L1MD3 LINE L1 -24 7971 7859 2 750 589 220 8 8 chr5 21693975 21694094 -130843165 - B3 SINE B2 -3 213 95 2 750 1352 255 135 32 chr5 21694240 21694795 -130842464 - Lx8 LINE L1 -9 7464 6853 2 750 21 36 0 0 chr5 21695891 21695919 -130841340 + AT_rich Low_complexity Low_complexity 1 28 0 2 750 396 0 0 0 chr5 21697503 21697547 -130839712 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 750 2306 216 35 28 chr5 21698882 21699420 -130837839 + Lx7 LINE L1 6847 7388 -308 2 750 318 206 0 0 chr5 21699429 21699502 -130837757 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 750 801 180 158 14 chr5 21699563 21699772 -130837487 + Lx7 LINE L1 7458 7696 0 2 750 275 312 0 27 chr5 21700562 21700674 -130836585 + HAL1 LINE L1 2023 2131 -376 2 750 319 236 0 65 chr5 21704483 21704560 -130832699 - PB1D9 SINE Alu -2 118 47 2 750 586 236 0 8 chr5 21706017 21706280 -130830979 + (TG)n Simple_repeat Simple_repeat 1 260 0 2 750 333 268 14 7 chr5 21706250 21706389 -130830870 + (TATG)n Simple_repeat Simple_repeat 4 143 0 2 750 3303 8 5 47 chr5 21706853 21707236 -130830023 + IAPLTR1_Mm LTR ERVK 1 367 0 2 750 1032 86 159 0 chr5 21707236 21707399 -130829860 + IAPEz-int LTR ERVK 8 196 -6285 2 750 7742 70 98 35 chr5 21707370 21708594 -130828665 + IAPEz-int LTR ERVK 67 1313 -5168 2 750 29607 18 1 1 chr5 21708593 21711867 -130825392 + IAPEz-int LTR ERVK 3210 6481 0 2 750 3317 6 5 47 chr5 21711867 21712250 -130825009 + IAPLTR1_Mm LTR ERVK 1 367 0 2 750 410 0 20 0 chr5 21712418 21712468 -130824791 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 750 180 213 91 26 chr5 21714146 21714223 -130823036 - L3 LINE CR1 -2351 2138 2057 2 750 836 266 197 25 chr5 21715596 21716300 -130820959 - L1MA7 LINE L1 -2 6289 5459 2 750 262 265 241 0 chr5 21717170 21717332 -130819927 - L1MEg LINE L1 -4671 1413 1213 2 750 594 209 0 0 chr5 21717593 21717732 -130819527 + (CA)n Simple_repeat Simple_repeat 2 140 0 2 750 324 0 0 0 chr5 21717759 21717795 -130819464 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 750 1020 266 26 9 chr5 21717867 21718095 -130819164 - MTE2b LTR MaLR -147 232 1 2 750 207 0 0 0 chr5 21718240 21718263 -130818996 + (T)n Simple_repeat Simple_repeat 1 23 0 2 750 5651 50 36 9 chr5 21718281 21718969 -130818290 + L1Md_F2 LINE L1 5862 6568 -14 2 750 243 0 0 0 chr5 21718972 21718999 -130818260 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 750 32694 11 0 3 chr5 21719848 21725246 -130812013 + L1Md_A LINE L1 237 5586 -297 2 750 8869 11 1 0 chr5 21725246 21726241 -130811018 + L1Md_A LINE L1 5587 6582 0 2 750 180 0 0 0 chr5 21726736 21726756 -130810503 + (CAGAG)n Simple_repeat Simple_repeat 5 24 0 2 750 279 0 0 0 chr5 21727074 21727105 -130810154 + (T)n Simple_repeat Simple_repeat 1 31 0 2 750 265 317 67 47 chr5 21728478 21728627 -130808632 + MIR SINE MIR 96 247 -15 2 750 22 0 0 0 chr5 21729405 21729427 -130807832 + AT_rich Low_complexity Low_complexity 1 22 0 2 750 429 302 121 7 chr5 21729476 21729616 -130807643 + RSINE1 SINE B4 3 158 -7 2 750 530 294 0 53 chr5 21729730 21729881 -130807378 + B4A SINE B4 1 143 -149 2 750 847 249 32 65 chr5 21729900 21730209 -130807050 + RLTR15 LTR ERVK 54 352 -7 2 750 225 128 0 0 chr5 21730653 21730700 -130806559 + (T)n Simple_repeat Simple_repeat 1 47 0 2 750 337 337 43 0 chr5 21730797 21730931 -130806328 - L2b LINE L2 -7 3419 3225 2 750 23 0 0 0 chr5 21731420 21731443 -130805816 + AT_rich Low_complexity Low_complexity 1 23 0 2 750 378 0 0 0 chr5 21731504 21731546 -130805713 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 750 270 0 0 0 chr5 21731546 21731575 -130805684 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 750 270 0 0 0 chr5 21731575 21731604 -130805655 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 750 811 289 15 7 chr5 21731698 21731970 -130805289 - Lx9 LINE L1 -248 7396 7123 2 750 1567 238 36 25 chr5 21731984 21732428 -130804831 + Lx9 LINE L1 6657 7105 -539 2 750 322 172 18 0 chr5 21732558 21732619 -130804640 - B1_Mm SINE Alu 0 147 59 2 750 478 330 53 41 chr5 21732704 21732947 -130804312 + ORR1E LTR MaLR 3 248 -111 2 750 296 299 100 30 chr5 21733978 21734178 -130803081 - MER90a LTR ERV1 -182 432 219 2 750 348 265 51 11 chr5 21734206 21734333 -130802926 - MER90a LTR ERV1 -443 171 5 2 750 1426 314 108 31 chr5 21734381 21734718 -130802541 + L1MC1 LINE L1 5283 5693 -486 2 750 339 25 0 0 chr5 21734718 21734758 -130802501 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 750 1426 308 54 35 chr5 21734758 21735385 -130801874 + L1MC1 LINE L1 5694 6316 -17 2 750 275 314 23 0 chr5 21735557 21735643 -130801616 + Lx8 LINE L1 6666 6753 -720 2 750 339 235 81 62 chr5 21736004 21736183 -130801076 - MER3 DNA MER1_type -46 163 1 2 750 22 56 0 0 chr5 21736630 21736666 -130800593 + AT_rich Low_complexity Low_complexity 1 36 0 2 750 27 62 0 0 chr5 21737248 21737296 -130799963 + AT_rich Low_complexity Low_complexity 1 48 0 2 750 1417 32 10 31 chr5 21737695 21737890 -130799369 - L1Md_F3 LINE L1 0 6584 6394 2 750 23 0 0 0 chr5 21738732 21738755 -130798504 + AT_rich Low_complexity Low_complexity 1 23 0 2 750 182 200 44 0 chr5 21739499 21739544 -130797715 - MIR SINE MIR -177 85 39 2 750 27 0 0 0 chr5 21741146 21741173 -130796086 + AT_rich Low_complexity Low_complexity 1 27 0 2 750 2400 138 63 5 chr5 21742960 21743390 -130793869 - L1_Mm LINE L1 -320 5563 5109 2 750 2224 98 23 23 chr5 21743418 21743763 -130793496 + Lx LINE L1 6309 6653 -1 2 750 288 212 12 48 chr5 21744477 21744561 -130792698 + ID4 SINE ID 2 82 -1 2 750 805 277 109 28 chr5 21745157 21745561 -130791698 - Lx8 LINE L1 -1 7472 7025 2 750 1429 243 55 6 chr5 21745722 21746070 -130791189 + ORR1D1 LTR MaLR 10 374 0 2 750 250 290 101 0 chr5 21746854 21746923 -130790336 + B4 SINE B4 211 286 -6 2 750 180 137 19 38 chr5 21747097 21747150 -130790109 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 750 384 22 0 0 chr5 21747947 21747992 -130789267 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 750 197 317 63 38 chr5 21748014 21748212 -130789047 + MIRc SINE MIR 24 228 -48 2 750 288 0 0 0 chr5 21748637 21748669 -130788590 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 750 452 282 53 0 chr5 21749826 21749964 -130787295 + MER63A DNA AcHobo 27 173 -37 2 750 340 276 41 0 chr5 21750471 21750569 -130786690 - RSINE1 SINE B4 -58 107 6 2 750 219 155 69 0 chr5 21750649 21750707 -130786552 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 750 694 226 48 60 chr5 21750935 21751203 -130786056 - L1MB1 LINE L1 -52 6116 5852 2 750 208 289 22 11 chr5 21751255 21751346 -130785913 + A-rich Low_complexity Low_complexity 4 95 0 2 750 922 146 12 6 chr5 21751364 21751536 -130785723 - Lx2B LINE L1 -1165 5835 5663 2 750 1365 169 48 0 chr5 21751691 21751922 -130785337 + MTC LTR MaLR 3 244 -177 2 750 189 0 0 0 chr5 21753410 21753431 -130783828 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2 750 246 363 91 19 chr5 21753798 21754006 -130783253 + L4 LINE RTE 1079 1301 -728 2 750 338 264 179 48 chr5 21754549 21754800 -130782459 - L1MD LINE L1 -3752 2394 2111 2 750 229 225 24 24 chr5 21754972 21755054 -130782205 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 750 25 31 0 0 chr5 21755081 21755113 -130782146 + AT_rich Low_complexity Low_complexity 1 32 0 2 750 23 0 0 0 chr5 21757131 21757154 -130780105 + AT_rich Low_complexity Low_complexity 1 23 0 2 751 402 216 70 31 chr5 21760098 21760227 -130777032 - Lx5 LINE L1 -3 7047 6914 2 751 280 279 105 9 chr5 21760610 21760715 -130776544 - ID_B1 SINE B4 0 224 110 2 751 498 292 12 12 chr5 21760740 21760910 -130776349 - L1MA5 LINE L1 -5 6295 6126 2 751 233 28 0 77 chr5 21761962 21762001 -130775258 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 3 751 181 222 133 0 chr5 21762198 21762243 -130775016 - L2b LINE L2 -13 3362 3312 3 751 748 276 19 58 chr5 21765262 21765470 -130771789 + B4A SINE B4 22 221 -71 3 751 511 297 54 0 chr5 21765488 21765636 -130771623 + RSINE1 SINE B4 2 157 -8 3 751 358 259 56 11 chr5 21765656 21765746 -130771513 + B4A SINE B4 199 292 0 3 751 990 112 0 0 chr5 21765813 21765982 -130771277 + (CA)n Simple_repeat Simple_repeat 2 170 0 3 751 1020 207 59 0 chr5 21767468 21767502 -130769757 - B3 SINE B2 0 216 183 3 751 270 81 0 0 chr5 21767502 21767539 -130769720 + (TATG)n Simple_repeat Simple_repeat 2 38 0 3 751 1020 207 59 0 chr5 21767539 21767707 -130769552 - B3 SINE B2 -34 182 4 3 751 299 169 31 0 chr5 21768594 21768659 -130768600 + (CATA)n Simple_repeat Simple_repeat 1 67 0 3 751 28 48 0 0 chr5 21768931 21768973 -130768286 + AT_rich Low_complexity Low_complexity 1 42 0 3 751 22 0 0 0 chr5 21769091 21769113 -130768146 + AT_rich Low_complexity Low_complexity 1 22 0 3 751 24 0 0 0 chr5 21769433 21769457 -130767802 + AT_rich Low_complexity Low_complexity 1 24 0 3 751 1816 81 0 16 chr5 21769559 21769811 -130767448 - L1_Mus1 LINE L1 0 6567 6320 3 751 338 306 52 59 chr5 21769828 21769981 -130767278 + RSINE1 SINE B4 2 153 -12 3 751 189 0 0 0 chr5 21769984 21770005 -130767254 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 751 513 0 0 0 chr5 21770005 21770061 -130767198 + (GA)n Simple_repeat Simple_repeat 2 58 0 3 751 380 218 10 112 chr5 21770131 21770229 -130767030 + PB1D10 SINE Alu 30 117 0 3 751 273 259 0 17 chr5 21771357 21771416 -130765843 + RSINE1 SINE B4 2 59 -106 3 751 618 250 16 0 chr5 21772003 21772131 -130765128 + ID_B1 SINE B4 83 212 -12 3 751 318 277 82 30 chr5 21773389 21773523 -130763736 + L1MC LINE L1 5081 5221 -925 3 751 501 17 0 0 chr5 21773599 21773657 -130763602 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 3 751 704 331 25 28 chr5 21773657 21773968 -130763291 - MTD LTR MaLR -108 311 2 3 751 228 222 220 10 chr5 21774033 21774133 -130763126 + L1M2 LINE L1 5741 5861 -439 3 751 351 187 13 0 chr5 21774592 21774667 -130762592 + L1ME2z LINE L1 5366 5441 -723 3 751 285 268 61 18 chr5 21774982 21775096 -130762163 + RMER15 LTR ERVL 384 502 -73 3 751 475 283 127 26 chr5 21775314 21775692 -130761567 + L1ME2z LINE L1 5657 6072 -372 3 751 975 249 0 38 chr5 21775887 21776100 -130761159 + B3 SINE B2 8 212 -4 3 751 619 116 27 0 chr5 21776554 21776666 -130760593 + Lx2 LINE L1 6883 6997 0 3 751 1007 161 126 0 chr5 21776693 21776892 -130760367 + URR1A DNA MER1_type 2 225 -1 3 751 427 298 140 37 chr5 21777761 21777925 -130759334 + B3A SINE B2 2 182 -16 3 751 1325 270 74 99 chr5 21778525 21779376 -130757883 + L1MB8 LINE L1 5292 6120 -58 3 751 3810 35 2 4 chr5 21781057 21781511 -130755748 - L1Md_F2 LINE L1 -2 6580 6128 3 751 777 206 7 27 chr5 21782056 21782206 -130755053 + B1_Mus1 SINE Alu 2 148 0 3 751 267 104 0 0 chr5 21783251 21783299 -130753960 + (TTCA)n Simple_repeat Simple_repeat 4 51 0 3 751 182 37 37 0 chr5 21783575 21783602 -130753657 + (CATA)n Simple_repeat Simple_repeat 4 31 0 3 751 242 106 0 21 chr5 21783605 21783653 -130753606 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 3 751 469 350 28 0 chr5 21783659 21783802 -130753457 - RSINE1 SINE B4 -17 148 2 3 751 1796 179 124 164 chr5 21784131 21784767 -130752492 + RMER19C LTR ERVK 1 611 0 3 751 23 0 0 0 chr5 21785501 21785524 -130751735 + AT_rich Low_complexity Low_complexity 1 23 0 3 751 739 179 27 33 chr5 21785922 21786072 -130751187 - B1_Mur4 SINE Alu -1 149 1 3 751 3985 194 150 12 chr5 21786097 21786990 -130750269 - RMER1B Other Other -5 1061 46 3 751 379 244 0 0 chr5 21787404 21787494 -130749765 - RMER1B Other Other -919 147 58 3 751 240 152 45 0 chr5 21789063 21789129 -130748130 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 751 777 282 38 58 chr5 21789180 21789523 -130747736 + MTE2b LTR MaLR 42 377 -2 3 751 180 295 101 13 chr5 21789577 21789656 -130747603 - MER5B DNA MER1_type -29 149 64 3 751 236 246 0 0 chr5 21789690 21789747 -130747512 - MER53 DNA hAT -133 60 4 3 751 754 266 218 51 chr5 21790221 21790767 -130746492 + RMER1C Other Other 568 1204 -138 3 751 342 181 11 0 chr5 21790888 21790957 -130746302 + RMER1C Other Other 1259 1319 -23 3 751 754 301 81 24 chr5 21791743 21792152 -130745107 + L1MA5 LINE L1 5505 5936 -364 3 751 624 91 0 0 chr5 21792404 21792492 -130744767 + (GGGA)n Simple_repeat Simple_repeat 1 88 0 3 751 207 139 0 0 chr5 21792951 21792987 -130744272 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 751 237 305 40 0 chr5 21793848 21793959 -130743300 - MIR SINE MIR -38 230 112 3 751 303 298 207 44 chr5 21794017 21794351 -130742908 - MTE2a LTR MaLR -26 353 2 3 751 213 216 0 19 chr5 21794697 21794749 -130742510 + GA-rich Low_complexity Low_complexity 2 52 0 3 751 489 71 0 0 chr5 21794754 21794824 -130742435 + (CAGA)n Simple_repeat Simple_repeat 4 73 0 3 751 333 293 0 39 chr5 21794877 21794980 -130742279 - PB1D10 SINE Alu -1 116 18 3 751 222 118 0 0 chr5 21795707 21795741 -130741518 + (TCCC)n Simple_repeat Simple_repeat 2 35 0 3 751 488 240 143 48 chr5 21796871 21797164 -130740095 + L2 LINE L2 2297 2617 -802 3 751 450 36 0 0 chr5 21798049 21798105 -130739154 + (GA)n Simple_repeat Simple_repeat 2 57 0 3 751 204 97 0 0 chr5 21798477 21798508 -130738751 + (CGAT)n Simple_repeat Simple_repeat 3 33 0 3 751 36 23 0 0 chr5 21798863 21798906 -130738353 + AT_rich Low_complexity Low_complexity 1 43 0 3 751 26 0 0 0 chr5 21801570 21801596 -130735663 + AT_rich Low_complexity Low_complexity 1 26 0 3 751 706 281 6 0 chr5 21802086 21802264 -130734995 + B3 SINE B2 29 207 -9 3 751 29 0 0 0 chr5 21805764 21805793 -130731466 + AT_rich Low_complexity Low_complexity 1 29 0 3 751 437 234 119 16 chr5 21806686 21806812 -130730447 + ID_B1 SINE B4 86 224 0 3 751 473 315 147 16 chr5 21808096 21808333 -130728926 - LTR16C LTR ERVL -194 295 27 3 751 742 238 160 79 chr5 21808333 21808726 -130728533 - MER63B DNA AcHobo 0 436 12 3 751 225 331 42 21 chr5 21809420 21809562 -130727697 - L3 LINE CR1 -3368 1121 977 3 751 1358 82 11 0 chr5 21810052 21810234 -130727025 + L1_Mus2 LINE L1 6382 6565 -1 3 751 3340 50 0 0 chr5 21811351 21811748 -130725511 - MTB LTR MaLR -3 397 1 3 751 1598 160 32 30 chr5 21812092 21812455 -130724804 + Lx7 LINE L1 5717 6085 -1611 3 751 3127 18 18 0 chr5 21813929 21814327 -130722932 - LTRIS_Mm LTR ERV1 -77 405 1 3 751 1015 35 21 7 chr5 21814327 21814454 -130722805 + ORR1C2 LTR MaLR 218 346 0 3 751 793 54 0 0 chr5 21814454 21814565 -130722694 + ORR1C2-int LTR MaLR 1 111 -1681 3 751 1034 152 45 45 chr5 21814735 21814952 -130722307 + ORR1C2 LTR MaLR 138 357 -27 3 751 753 223 165 40 chr5 21814952 21815279 -130721980 + RLTR9A LTR ERVK 1 368 0 3 751 1034 152 45 45 chr5 21815279 21815308 -130721951 + ORR1C2 LTR MaLR 358 384 0 3 751 237 235 115 19 chr5 21815924 21816028 -130721231 + Lx7 LINE L1 7566 7679 -17 3 751 769 257 42 32 chr5 21816232 21816542 -130720717 + RLTR15 LTR ERVK 10 322 -37 3 751 279 0 0 0 chr5 21818022 21818053 -130719206 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 751 438 286 131 6 chr5 21818894 21819070 -130718189 + MLT1A0 LTR MaLR 114 311 -54 3 751 318 50 0 0 chr5 21819889 21819929 -130717330 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 751 993 264 128 18 chr5 21819968 21820311 -130716948 + Lx8 LINE L1 7075 7455 -18 3 751 1112 240 43 81 chr5 21820587 21820981 -130716278 + MTE2a LTR MaLR 1 379 0 3 751 230 263 70 0 chr5 21820995 21821052 -130716207 + B1F SINE Alu 89 149 0 3 751 21 0 0 0 chr5 21821339 21821360 -130715899 + AT_rich Low_complexity Low_complexity 1 21 0 3 751 207 0 0 0 chr5 21821450 21821473 -130715786 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 3 751 228 214 0 0 chr5 21822360 21822416 -130714843 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 751 423 0 0 0 chr5 21822416 21822463 -130714796 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 751 525 44 0 0 chr5 21822940 21823008 -130714251 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 751 340 149 27 13 chr5 21823266 21823341 -130713918 + GA-rich Low_complexity Low_complexity 3 78 0 3 751 773 320 51 12 chr5 21823806 21824138 -130713121 - MTEa LTR MaLR -34 345 1 3 751 446 49 16 0 chr5 21824657 21824718 -130712541 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 751 3197 184 131 20 chr5 21824774 21825467 -130711792 - Lx5 LINE L1 0 7050 6281 3 751 902 206 81 0 chr5 21825465 21825688 -130711571 + L1_Mur3 LINE L1 5064 5304 -576 3 751 212 228 35 0 chr5 21826961 21827018 -130710241 + (TCTCTG)n Simple_repeat Simple_repeat 6 64 0 3 751 401 156 0 13 chr5 21827030 21827108 -130710151 + CT-rich Low_complexity Low_complexity 2 78 0 3 751 402 21 0 0 chr5 21827108 21827155 -130710104 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 751 25 0 0 0 chr5 21827260 21827285 -130709974 + AT_rich Low_complexity Low_complexity 1 25 0 3 751 207 162 0 0 chr5 21829281 21829318 -130707941 + GA-rich Low_complexity Low_complexity 2 38 0 3 751 263 177 0 16 chr5 21829364 21829427 -130707832 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 751 315 0 0 0 chr5 21829561 21829596 -130707663 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 3 751 685 326 85 48 chr5 21829748 21830019 -130707240 + B4A SINE B4 10 290 -2 3 751 198 103 0 0 chr5 21830051 21830080 -130707179 + (CCA)n Simple_repeat Simple_repeat 1 29 0 3 751 315 0 0 0 chr5 21830107 21830142 -130707117 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 751 3288 53 2 2 chr5 21832235 21832631 -130704628 - MTA_Mm LTR MaLR 0 396 1 3 751 671 294 50 13 chr5 21832882 21833120 -130704139 + Lx8 LINE L1 6784 7030 -443 4 751 604 229 64 0 chr5 21833123 21833280 -130703979 + B3 SINE B2 40 206 -10 4 751 595 305 108 58 chr5 21833294 21833729 -130703530 + Lx8 LINE L1 7000 7456 -17 4 751 209 229 16 0 chr5 21833756 21833817 -130703442 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 751 511 270 165 4 chr5 21834542 21834791 -130702468 - MER82 DNA MER2_type -208 445 157 4 751 359 227 50 30 chr5 21834927 21835027 -130702232 + Lx8 LINE L1 7149 7250 -223 4 751 435 95 0 0 chr5 21835073 21835147 -130702112 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 751 247 358 58 0 chr5 21836876 21837013 -130700246 - L2 LINE L2 -1076 2343 2199 4 751 237 299 26 0 chr5 21837874 21837951 -130699308 - ID4 SINE ID -3 80 2 4 751 279 226 278 0 chr5 21838207 21838340 -130698919 - L1MA7 LINE L1 -329 5962 5793 4 751 1623 112 26 4 chr5 21839495 21839765 -130697494 - RMER6C LTR ERVK 0 690 415 4 751 207 146 0 0 chr5 21839792 21839833 -130697426 + (AACTG)n Simple_repeat Simple_repeat 2 42 0 4 751 612 148 0 76 chr5 21839853 21839998 -130697261 - RMER6C LTR ERVK -537 183 1 4 751 25 51 0 0 chr5 21840113 21840152 -130697107 + AT_rich Low_complexity Low_complexity 1 39 0 4 751 23 0 0 0 chr5 21840339 21840362 -130696897 + AT_rich Low_complexity Low_complexity 1 23 0 4 751 213 178 0 0 chr5 21840756 21840801 -130696458 + T-rich Low_complexity Low_complexity 1 45 0 4 751 225 247 27 118 chr5 21840805 21840915 -130696344 - B3A SINE B2 0 198 99 4 751 329 336 88 0 chr5 21840916 21841053 -130696206 - B3A SINE B2 -49 149 1 4 751 2384 58 0 22 chr5 21842877 21843193 -130694066 - L1_Mus2 LINE L1 -1 6565 6257 4 751 1794 43 5 0 chr5 21843194 21843402 -130693857 + L1_Mus2 LINE L1 6034 6242 -324 4 751 28 29 0 0 chr5 21844555 21844590 -130692669 + AT_rich Low_complexity Low_complexity 1 35 0 4 751 446 246 53 53 chr5 21844619 21844769 -130692490 - B3A SINE B2 -33 165 16 4 751 22 56 0 0 chr5 21850226 21850262 -130686997 + GC_rich Low_complexity Low_complexity 1 36 0 4 751 250 147 0 29 chr5 21850564 21850634 -130686625 + C-rich Low_complexity Low_complexity 2 69 0 4 751 305 257 65 28 chr5 21852069 21852177 -130685082 - MER3 DNA MER1_type -77 132 21 4 751 190 314 186 0 chr5 21852774 21852892 -130684367 - L2a LINE L2 0 3426 3287 4 751 741 210 77 33 chr5 21853618 21853800 -130683459 + B3 SINE B2 2 191 -25 4 751 281 239 58 2 chr5 21853949 21854070 -130683189 - L1ME3A LINE L1 -215 5947 5818 4 751 338 269 215 11 chr5 21854472 21854649 -130682610 + MER5C1 DNA MER1_type 3 215 -48 4 751 522 319 166 38 chr5 21855660 21856112 -130681147 + Arthur1 DNA Tip100 57 566 -3381 4 751 296 238 156 0 chr5 21856144 21856266 -130680993 + B1F SINE Alu 7 147 -2 4 751 293 350 92 10 chr5 21856451 21856647 -130680612 + Arthur1 DNA Tip100 796 1007 -2940 4 751 415 212 29 10 chr5 21856687 21856804 -130680455 - L1ME1 LINE L1 -220 5944 5826 4 751 313 339 38 64 chr5 21857019 21857340 -130679919 - Charlie4a DNA MER1_type 0 508 180 4 751 27 29 0 0 chr5 21857654 21857688 -130679571 + AT_rich Low_complexity Low_complexity 1 34 0 4 751 226 276 45 22 chr5 21858197 21858286 -130678973 - MLT1K LTR MaLR -13 582 492 4 751 23 0 0 0 chr5 21858929 21858952 -130678307 + AT_rich Low_complexity Low_complexity 1 23 0 4 751 21 0 0 0 chr5 21860425 21860446 -130676813 + AT_rich Low_complexity Low_complexity 1 21 0 4 751 761 179 196 27 chr5 21860590 21860774 -130676485 - B3 SINE B2 0 216 2 4 751 616 90 20 10 chr5 21862374 21862475 -130674784 + (TCCCC)n Simple_repeat Simple_repeat 3 104 0 4 751 4586 32 0 0 chr5 21862499 21863027 -130674232 - L1Md_A LINE L1 -2 6580 6053 4 751 270 31 0 0 chr5 21863027 21863059 -130674200 + L1_Mm LINE L1 4707 4738 -1145 4 751 238 244 33 8 chr5 21863062 21863182 -130674077 + CT-rich Low_complexity Low_complexity 2 124 0 4 751 759 222 116 26 chr5 21863186 21863376 -130673883 - ID_B1 SINE B4 -17 207 1 4 751 189 0 0 0 chr5 21863671 21863692 -130673567 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4 751 2716 213 105 163 chr5 21863693 21864770 -130672489 - RMER1B Other Other -4 1062 49 4 751 30 0 0 0 chr5 21865197 21865227 -130672032 + AT_rich Low_complexity Low_complexity 1 30 0 4 751 447 292 34 42 chr5 21865576 21865669 -130671590 - B1_Mur1 SINE Alu -30 119 23 4 751 3422 35 0 5 chr5 21865669 21866067 -130671192 + MTA_Mm LTR MaLR 1 396 0 4 751 447 292 34 42 chr5 21866067 21866091 -130671168 - B1_Mur1 SINE Alu -127 22 3 4 751 297 271 18 18 chr5 21866245 21866354 -130670905 - RMER12 LTR ERVK -482 840 732 4 751 230 265 36 0 chr5 21866803 21866886 -130670373 - MER117 DNA MER1_type -109 88 3 4 751 221 368 26 77 chr5 21867213 21867369 -130669890 + B4A SINE B4 2 149 -143 4 751 225 117 50 0 chr5 21867829 21867889 -130669370 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 4 751 13533 24 3 1 chr5 21868060 21870292 -130666967 - L1Md_T LINE L1 0 6585 4348 4 751 18252 63 0 6 chr5 21870290 21873714 -130663545 + L1Md_T LINE L1 41 3541 -2345 4 751 4561 14 0 0 chr5 21873712 21874222 -130663037 + L1Md_T LINE L1 5080 5589 -297 4 751 8644 31 0 0 chr5 21874223 21875218 -130662041 + L1Md_T LINE L1 5591 6585 0 4 751 25384 48 3 4 chr5 21875224 21879158 -130658101 - L1Md_T LINE L1 -1524 4362 338 4 751 182 352 67 22 chr5 21879342 21879432 -130657827 - MIR SINE MIR -154 108 15 4 751 213 65 0 0 chr5 21880708 21880739 -130656520 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 751 243 308 116 8 chr5 21880744 21880865 -130656394 - RSINE1 SINE B4 -7 158 25 4 751 430 233 57 28 chr5 21880904 21881010 -130656249 - B3 SINE B2 -1 215 107 4 751 223 303 0 29 chr5 21881022 21881090 -130656169 - B3A SINE B2 -125 73 8 4 751 561 189 20 96 chr5 21881514 21881564 -130655695 - Lx9 LINE L1 -179 7465 7419 4 751 3503 23 2 0 chr5 21881564 21881959 -130655300 - MTA_Mm LTR MaLR 0 396 1 4 751 561 189 20 96 chr5 21881959 21882054 -130655205 - Lx9 LINE L1 -226 7418 7331 4 751 234 220 0 0 chr5 21882055 21882114 -130655145 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 751 22 70 0 0 chr5 21882172 21882215 -130655044 + AT_rich Low_complexity Low_complexity 1 43 0 4 751 259 358 110 6 chr5 21883409 21883572 -130653687 - MIR SINE MIR -25 237 58 4 751 304 246 36 59 chr5 21884379 21884512 -130652747 - ID4 SINE ID -24 128 1 4 751 397 262 160 7 chr5 21884668 21884818 -130652441 - MTD LTR MaLR -5 414 242 4 751 815 122 15 0 chr5 21884916 21885047 -130652212 - ORR1A4 LTR MaLR 0 329 197 4 751 351 0 0 0 chr5 21885354 21885393 -130651866 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 751 247 214 36 0 chr5 21885396 21885452 -130651807 + GA-rich Low_complexity Low_complexity 2 59 0 4 751 493 245 122 7 chr5 21885842 21885918 -130651341 + RMER30 DNA MER1_type 5 79 -123 4 751 390 69 0 0 chr5 21885918 21885976 -130651283 + (CATA)n Simple_repeat Simple_repeat 3 60 0 4 751 493 245 122 7 chr5 21885976 21886047 -130651212 + RMER30 DNA MER1_type 80 168 -34 4 751 663 73 0 0 chr5 21886061 21886143 -130651116 - L1_Mur1 LINE L1 -310 5576 5495 4 751 8253 66 16 4 chr5 21886130 21887169 -130650090 + L1_Mus3 LINE L1 5587 6638 0 4 751 255 271 58 83 chr5 21887369 21887411 -130649848 + Lx7 LINE L1 5727 5764 -416 4 751 5942 136 8 0 chr5 21887411 21888317 -130648942 + Lx2 LINE L1 6085 6997 0 4 93 5538 219 67 9 chr5 21888317 21889567 -130647692 + Lx7 LINE L1 5738 7049 -647 4 752 1072 214 49 11 chr5 21889610 21889875 -130647384 + Lx7 LINE L1 7422 7696 0 4 752 270 304 0 28 chr5 21889971 21890042 -130647217 - tRNA-Ala-GCA tRNA tRNA -6 69 1 4 752 1359 47 0 0 chr5 21890050 21890262 -130646997 + (TG)n Simple_repeat Simple_repeat 1 212 0 4 752 208 234 21 0 chr5 21891122 21891169 -130646090 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 752 746 287 111 15 chr5 21891182 21891444 -130645815 - B4 SINE B4 -4 288 2 4 752 1047 209 40 90 chr5 21892073 21892373 -130644886 - B4 SINE B4 -6 286 2 4 752 612 174 118 29 chr5 21893107 21893243 -130644016 - B1F2 SINE Alu 0 149 2 4 752 417 325 155 0 chr5 21893440 21893692 -130643567 - Charlie1a DNA MER1_type -1164 291 1 4 752 357 82 0 0 chr5 21893728 21893777 -130643482 + (A)n Simple_repeat Simple_repeat 1 49 0 4 752 272 318 0 0 chr5 21894051 21894117 -130643142 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 4 752 261 119 0 0 chr5 21894191 21894233 -130643026 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 752 24 32 0 0 chr5 21894350 21894381 -130642878 + AT_rich Low_complexity Low_complexity 1 31 0 4 752 259 294 10 80 chr5 21894745 21894845 -130642414 - MER63B DNA AcHobo -31 405 313 4 752 261 314 65 24 chr5 21895156 21895280 -130641979 - MER5A DNA MER1_type -2 187 59 4 752 2507 160 120 42 chr5 21895361 21895904 -130641355 + RMER4B LTR ERVK 1 585 0 4 752 356 0 23 0 chr5 21895918 21895962 -130641297 + (TAA)n Simple_repeat Simple_repeat 2 46 0 4 752 1121 284 46 81 chr5 21896470 21897082 -130640177 + L1MA4 LINE L1 5417 6012 -279 4 752 248 324 70 57 chr5 21897869 21898026 -130639233 - MLT1L LTR MaLR -307 303 145 4 752 215 178 22 0 chr5 21898106 21898151 -130639108 - MIRb SINE MIR -35 233 188 4 752 361 172 0 0 chr5 21898186 21898244 -130639015 + Lx8 LINE L1 6854 6911 -562 4 752 603 295 7 7 chr5 21898266 21898416 -130638843 + Lx8 LINE L1 7122 7271 -202 4 752 1462 270 61 36 chr5 21898453 21899123 -130638136 + Lx6 LINE L1 6455 7427 -33 4 752 270 81 0 0 chr5 21899123 21899160 -130638099 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 4 752 22 0 0 0 chr5 21899266 21899288 -130637971 + AT_rich Low_complexity Low_complexity 1 22 0 4 752 445 323 77 40 chr5 21900670 21900768 -130636491 + B4A SINE B4 1 96 -196 4 752 613 260 13 20 chr5 21900768 21900917 -130636342 + B1_Mur1 SINE Alu 1 148 -1 4 752 445 323 77 40 chr5 21900917 21901092 -130636167 + B4A SINE B4 97 283 -9 4 752 481 286 210 14 chr5 21901817 21902108 -130635151 - MT2A LTR ERVL -106 427 80 4 752 254 313 159 7 chr5 21902033 21902184 -130635075 - MTE2a LTR MaLR -205 174 1 4 752 521 279 153 92 chr5 21902231 21902733 -130634526 - L1M4 LINE L1 -2258 3888 3356 4 752 1722 179 76 11 chr5 21903290 21903645 -130633614 - ORR1C1 LTR MaLR 0 378 1 4 752 22 0 0 0 chr5 21904498 21904520 -130632739 + AT_rich Low_complexity Low_complexity 1 22 0 4 752 1569 215 18 23 chr5 21904627 21904970 -130632289 + ORR1D1 LTR MaLR 1 341 -33 5 752 489 290 140 19 chr5 21905474 21905731 -130631528 + B4A SINE B4 1 288 -4 5 752 545 137 28 39 chr5 21905737 21905919 -130631340 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 752 321 290 43 0 chr5 21907089 21907182 -130630077 + MLT1J2 LTR MaLR 352 448 0 5 752 270 0 0 0 chr5 21907762 21907792 -130629467 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 5 752 505 306 54 68 chr5 21907796 21908090 -130629169 - MMERGLN-int LTR ERV1 -6741 815 526 5 752 253 146 514 0 chr5 21908578 21908696 -130628563 - RLTR47_MM LTR ERV1 0 532 355 5 752 471 290 78 0 chr5 21908698 21908915 -130628344 - L1MA4 LINE L1 -145 6857 6624 5 752 222 269 239 9 chr5 21908919 21909028 -130628231 + B1_Mur1 SINE Alu 14 147 -2 5 752 574 300 61 35 chr5 21909057 21909433 -130627826 - L1MA4 LINE L1 -439 6563 6178 5 752 236 284 0 17 chr5 21909447 21909514 -130627745 - PB1D7 SINE Alu -1 119 54 5 752 491 273 26 68 chr5 21909540 21909869 -130627390 - L1MA4 LINE L1 -819 6183 5857 5 752 378 0 0 0 chr5 21909869 21909911 -130627348 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 752 448 273 53 63 chr5 21909911 21909943 -130627316 - L1MA4 LINE L1 -989 5856 5822 5 752 654 317 50 50 chr5 21909937 21910385 -130626874 - L1MA4 LINE L1 -4248 2601 2112 5 752 305 243 124 65 chr5 21910375 21910560 -130626699 - Lx6 LINE L1 -4 7456 7261 5 752 1388 254 68 11 chr5 21910557 21911015 -130626244 - Lx5 LINE L1 -140 7320 6486 5 752 3175 37 34 8 chr5 21911023 21911409 -130625850 + MTA_Mm LTR MaLR 1 396 0 5 752 9457 37 0 0 chr5 21911409 21912507 -130624752 + MTA_Mm-int LTR MaLR 1 1098 0 5 752 3126 23 3 0 chr5 21912511 21912898 -130624361 + MTA_Mm LTR MaLR 9 396 0 5 752 1972 237 36 51 chr5 21912908 21914061 -130623198 - Lx5 LINE L1 -670 6790 5447 5 752 1945 140 9 26 chr5 21914059 21914403 -130622856 + L1_Mus1 LINE L1 2619 2956 -2924 5 752 3327 168 8 12 chr5 21915867 21916464 -130620795 + RLTR17 LTR ERVK 98 692 0 5 752 3017 157 52 6 chr5 21916546 21917090 -130620169 - Lx4B LINE L1 -852 6206 5638 5 752 7885 130 45 6 chr5 21917093 21918391 -130618868 + Lx4B LINE L1 4290 5644 -923 5 752 769 249 13 71 chr5 21918482 21918707 -130618552 - B3 SINE B2 0 216 5 5 752 26 50 0 0 chr5 21918793 21918833 -130618426 + AT_rich Low_complexity Low_complexity 1 40 0 5 752 569 133 10 0 chr5 21920516 21920614 -130616645 + (GGA)n Simple_repeat Simple_repeat 1 99 0 5 752 294 29 0 0 chr5 21921349 21921384 -130615875 + (CAG)n Simple_repeat Simple_repeat 1 35 0 5 752 1493 199 89 84 chr5 21921740 21922179 -130615080 - RMER19C LTR ERVK 0 611 171 5 752 643 222 129 42 chr5 21922484 21922530 -130614729 - B3 SINE B2 -6 210 152 5 752 921 66 0 0 chr5 21922530 21922651 -130614608 + (TG)n Simple_repeat Simple_repeat 2 122 0 5 752 643 222 129 42 chr5 21922651 21922797 -130614462 - B3 SINE B2 -65 151 3 5 752 503 78 44 0 chr5 21923149 21923239 -130614020 + (TC)n Simple_repeat Simple_repeat 2 95 0 5 752 435 311 92 13 chr5 21923464 21923692 -130613567 - MLT1E1A LTR MaLR -23 657 412 5 752 342 0 0 0 chr5 21923807 21923845 -130613414 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 752 647 321 66 12 chr5 21923847 21924105 -130613154 - B4A SINE B4 -20 272 1 5 752 483 231 144 67 chr5 21924123 21924318 -130612941 - MLT1E1A LTR MaLR -423 257 1 5 752 2134 164 16 66 chr5 21924324 21924826 -130612433 - L1_Mur2 LINE L1 -2164 3713 3237 5 752 1867 155 35 3 chr5 21924826 21925136 -130612123 - L1_Mur2 LINE L1 -3381 2496 2177 5 752 4586 70 5 8 chr5 21925136 21925752 -130611507 - L1Md_F2 LINE L1 0 6582 5969 5 752 33814 81 9 8 chr5 21925753 21931056 -130606203 - L1Md_F LINE L1 -183 5700 393 5 752 1376 152 17 114 chr5 21931057 21931407 -130605852 - L1_Mur2 LINE L1 -3696 2181 1866 5 752 4286 143 27 94 chr5 21931419 21932386 -130604873 + RLTR13D6 LTR ERVK 1 902 0 5 752 1679 107 15 8 chr5 21932387 21932652 -130604607 + ORR1A3 LTR MaLR 60 326 0 5 752 967 306 28 7 chr5 21932975 21933258 -130604001 - B4 SINE B4 0 292 4 5 752 648 87 0 0 chr5 21933617 21933709 -130603550 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 5 752 585 228 31 16 chr5 21933713 21933842 -130603417 - B1_Mur1 SINE Alu -9 140 10 5 752 393 305 97 75 chr5 21933850 21934178 -130603081 - ORR1E LTR MaLR -2 357 22 5 752 491 260 126 54 chr5 21934373 21934650 -130602609 + L1M5 LINE L1 2708 3004 -3142 5 752 529 181 118 22 chr5 21935356 21935470 -130601789 + B1_Mur3 SINE Alu 1 117 -32 5 752 360 0 0 0 chr5 21935470 21935510 -130601749 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 752 529 181 118 22 chr5 21935510 21935531 -130601728 + B1_Mur3 SINE Alu 118 148 -1 5 752 361 287 65 16 chr5 21935655 21935779 -130601480 + B3A SINE B2 62 191 -7 5 752 26 50 0 0 chr5 21935781 21935821 -130601438 + AT_rich Low_complexity Low_complexity 1 40 0 5 752 363 269 94 33 chr5 21935832 21936013 -130601246 + L1M5 LINE L1 5350 5541 -632 5 752 686 81 61 0 chr5 21936158 21936257 -130601002 - 5S rRNA rRNA -12 109 5 5 752 3483 99 37 10 chr5 21936257 21936767 -130600492 + Lx2 LINE L1 6470 6993 -4 5 752 908 104 82 0 chr5 21936785 21936919 -130600340 + B1_Mus2 SINE Alu 2 146 -1 5 752 213 139 0 0 chr5 21936921 21936964 -130600295 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 5 752 636 259 131 65 chr5 21937021 21937118 -130600141 + MTD LTR MaLR 12 114 -305 5 752 531 0 0 0 chr5 21937118 21937177 -130600082 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 5 752 2913 48 0 0 chr5 21937180 21937534 -130599725 - L1Md_F2 LINE L1 -19 6563 6210 5 752 636 259 131 65 chr5 21937534 21937692 -130599567 + MTD LTR MaLR 115 288 -131 5 752 255 61 0 0 chr5 21937883 21937916 -130599343 + (CACG)n Simple_repeat Simple_repeat 2 34 0 5 752 268 284 69 0 chr5 21937924 21938026 -130599233 - L1MEc LINE L1 -5941 459 351 5 752 444 340 76 57 chr5 21938085 21938400 -130598859 + MLT1A0 LTR MaLR 15 335 -30 5 752 25 51 0 0 chr5 21939319 21939358 -130597901 + AT_rich Low_complexity Low_complexity 1 39 0 5 752 573 129 0 0 chr5 21939377 21939470 -130597789 + (TCTCCC)n Simple_repeat Simple_repeat 5 97 0 5 752 1146 97 0 19 chr5 21940758 21941227 -130596032 + (CA)n Simple_repeat Simple_repeat 1 460 0 5 752 1035 158 16 21 chr5 21943405 21943592 -130593667 + B2_Mm2 SINE B2 2 187 -8 5 752 4325 57 2 0 chr5 21943592 21944116 -130593143 + L1_Mus1 LINE L1 6042 6566 -1 5 752 767 279 119 36 chr5 21944386 21944639 -130592620 - B4 SINE B4 0 292 19 5 752 524 284 80 51 chr5 21944696 21945010 -130592249 + L1MA4A LINE L1 5731 6054 -246 5 752 208 176 14 14 chr5 21945177 21945246 -130592013 + A-rich Low_complexity Low_complexity 4 72 0 5 752 360 268 136 14 chr5 21945271 21945411 -130591848 - MLT1J LTR MaLR -33 479 323 5 752 247 324 44 26 chr5 21946516 21946630 -130590629 - L2b LINE L2 -25 3350 3235 5 752 1219 218 196 28 chr5 21946696 21946739 -130590520 - RLTR11A LTR ERVK -27 501 459 5 752 423 0 0 0 chr5 21946739 21946786 -130590473 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 752 1219 218 196 28 chr5 21946786 21946955 -130590304 - RLTR11A LTR ERVK -70 458 281 5 752 549 0 0 0 chr5 21946955 21947016 -130590243 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 752 1219 218 196 28 chr5 21947016 21947231 -130590028 - RLTR11A LTR ERVK -248 280 2 5 752 310 274 162 68 chr5 21947335 21947725 -130589534 + L1MB5 LINE L1 4192 4617 -1529 5 752 25 51 0 0 chr5 21948089 21948128 -130589131 + AT_rich Low_complexity Low_complexity 1 39 0 5 752 803 253 54 7 chr5 21948139 21948418 -130588841 + L1MB5 LINE L1 4909 5200 -946 5 752 327 272 40 95 chr5 21948422 21948548 -130588711 + PB1D10 SINE Alu 1 119 -1 5 752 342 0 0 0 chr5 21948558 21948596 -130588663 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 752 416 299 75 19 chr5 21948597 21948757 -130588502 + L1MB5 LINE L1 5830 5998 -176 5 752 228 182 0 0 chr5 21948876 21948920 -130588339 + GA-rich Low_complexity Low_complexity 4 47 0 5 752 575 208 0 14 chr5 21949088 21949234 -130588025 + GA-rich Low_complexity Low_complexity 3 146 0 5 752 397 275 64 53 chr5 21949307 21949495 -130587764 - ORR1E LTR MaLR -159 200 11 5 752 855 34 0 78 chr5 21949769 21949961 -130587298 + (TTCTC)n Simple_repeat Simple_repeat 1 177 0 5 752 387 113 0 0 chr5 21949962 21950024 -130587235 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 752 496 330 32 23 chr5 21950089 21950306 -130586953 - MIR SINE MIR -3 259 41 5 752 1298 256 30 8 chr5 21955320 21955683 -130581576 + MTEa LTR MaLR 6 376 -3 5 752 300 247 55 0 chr5 21956017 21956090 -130581169 + B1_Mur3 SINE Alu 19 95 -54 5 752 373 321 0 26 chr5 21956054 21956169 -130581090 - B1_Mur3 SINE Alu -37 112 1 5 752 1112 260 111 16 chr5 21956171 21956558 -130580701 - L1M4 LINE L1 -1107 5039 4616 5 752 447 19 0 0 chr5 21956584 21956636 -130580623 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 752 319 250 11 109 chr5 21957932 21958116 -130579143 + Lx9 LINE L1 7457 7622 -22 5 752 288 53 0 0 chr5 21958126 21958164 -130579095 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 752 358 272 114 28 chr5 21958164 21958363 -130578896 - MER112 DNA MER1_type -49 212 2 5 752 180 111 0 0 chr5 21958562 21958589 -130578670 + (CAAAG)n Simple_repeat Simple_repeat 2 28 0 5 752 373 296 0 0 chr5 21959589 21959697 -130577562 - Lx6 LINE L1 -718 6742 6635 5 752 1127 124 26 26 chr5 21959708 21959898 -130577361 - B2_Mm2 SINE B2 -3 192 3 5 752 294 73 0 0 chr5 21959989 21960030 -130577229 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 752 219 103 0 0 chr5 21960030 21960069 -130577190 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5 752 386 130 34 17 chr5 21960094 21960211 -130577048 + (CAGA)n Simple_repeat Simple_repeat 2 120 0 5 752 345 24 0 0 chr5 21960211 21960253 -130577006 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 752 267 213 0 16 chr5 21960260 21960322 -130576937 - RSINE1 SINE B4 -20 145 85 5 752 357 317 25 16 chr5 21960423 21960545 -130576714 - B4 SINE B4 -169 123 1 5 752 387 0 0 0 chr5 21961773 21961816 -130575443 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 752 217 262 0 0 chr5 21961880 21961941 -130575318 - ID4 SINE ID -22 61 1 5 752 39128 6 0 1 chr5 21962107 21967691 -130569568 + L1Md_T LINE L1 7 5586 -297 5 752 8568 34 0 2 chr5 21967691 21968689 -130568570 + L1Md_T LINE L1 5587 6582 0 5 752 1362 0 0 0 chr5 21968699 21968845 -130568414 + L1_Mm LINE L1 5441 5586 -297 5 752 9175 4 0 0 chr5 21968845 21969841 -130567418 + L1Md_A LINE L1 5587 6582 0 5 752 214 315 21 42 chr5 21969965 21970061 -130567198 - L2c LINE L2 -38 3349 3256 5 752 1229 48 0 0 chr5 21972135 21972281 -130564978 - B1_Mus2 SINE Alu 0 147 2 5 752 1055 309 84 26 chr5 21972289 21973026 -130564233 + L1MA7 LINE L1 5094 5956 -335 5 752 1219 221 23 63 chr5 21973451 21973798 -130563461 - MYSERV-int LTR ERVK -2443 4107 3775 5 752 747 229 75 21 chr5 21974553 21974737 -130562522 - RLTR15 LTR ERVK -56 303 104 5 752 531 0 0 0 chr5 21974737 21974796 -130562463 + (TC)n Simple_repeat Simple_repeat 1 59 0 6 752 747 229 75 21 chr5 21974796 21974892 -130562367 - RLTR15 LTR ERVK -256 103 9 5 752 315 259 122 0 chr5 21974917 21975056 -130562203 + L2 LINE L2 2847 3002 -417 6 752 7325 65 4 1 chr5 21976023 21976938 -130560321 + L1_Mus1 LINE L1 5650 6567 0 6 752 702 44 0 0 chr5 21978906 21978996 -130558263 + (TG)n Simple_repeat Simple_repeat 1 90 0 6 752 1105 218 63 30 chr5 21979002 21979272 -130557987 - B4A SINE B4 -9 283 5 6 752 6114 79 14 7 chr5 21979725 21980554 -130556705 - L1_Mus3 LINE L1 -2 6636 5802 6 752 388 313 40 0 chr5 21981157 21981307 -130555952 + MER3 DNA MER1_type 21 176 -33 6 752 720 225 21 0 chr5 21981870 21982012 -130555247 - Lx9 LINE L1 -431 7213 7069 6 752 310 393 36 0 chr5 21982122 21982262 -130554997 + B3A SINE B2 39 183 -15 6 752 468 0 0 0 chr5 21982272 21982324 -130554935 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 752 319 231 27 63 chr5 21982380 21982491 -130554768 - PB1D7 SINE Alu -13 107 1 6 752 7994 60 1 0 chr5 21983549 21984531 -130552728 - L1Md_F2 LINE L1 0 6582 5600 6 752 28 0 0 0 chr5 21984971 21984999 -130552260 + AT_rich Low_complexity Low_complexity 1 28 0 6 752 256 296 25 0 chr5 21985155 21985236 -130552023 - L1ME2 LINE L1 -81 6083 6001 6 752 369 0 0 0 chr5 21985236 21985277 -130551982 + (CCA)n Simple_repeat Simple_repeat 3 43 0 6 752 251 206 17 42 chr5 21985399 21985471 -130551788 - Lx6 LINE L1 -2252 5743 5662 6 752 519 238 132 0 chr5 21986201 21986352 -130550907 - MLT1A1 LTR MaLR -14 394 224 6 752 396 333 59 5 chr5 21986779 21986981 -130550278 + L2 LINE L2 2497 2709 -710 6 752 5392 183 81 7 chr5 21989223 21990268 -130546991 - Lx7 LINE L1 -368 7328 6206 6 752 545 244 50 33 chr5 21994877 21995059 -130542200 + B3 SINE B2 23 207 -9 6 752 419 248 77 0 chr5 21995067 21995184 -130542075 - B3A SINE B2 -46 152 27 6 752 459 306 91 38 chr5 21995784 21996049 -130541210 - B4A SINE B4 -12 280 2 6 752 1235 209 99 43 chr5 22003373 22003478 -130533781 + MTD LTR MaLR 3 118 -301 1 752 243 0 0 0 chr5 22003478 22003505 -130533754 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 752 1235 209 99 43 chr5 22003505 22003794 -130533465 + MTD LTR MaLR 119 418 -1 1 752 183 346 169 0 chr5 22004227 22004363 -130532896 - L2 LINE L2 -557 2862 2704 3 752 198 394 40 34 chr5 22004682 22004858 -130532401 - L2 LINE L2 -1098 2321 2145 3 752 185 377 0 0 chr5 22005582 22005643 -130531616 - L3 LINE CR1 -833 3656 3596 4 752 315 49 0 0 chr5 22006169 22006210 -130531049 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 752 1028 287 32 39 chr5 22006223 22006502 -130530757 - B4 SINE B4 -7 285 9 6 752 287 262 164 14 chr5 22008356 22008569 -130528690 + L1MDa LINE L1 1862 2106 -4527 7 752 880 261 79 76 chr5 22008841 22009131 -130528128 + B4A SINE B4 1 291 -1 8 752 380 295 16 37 chr5 22009477 22009667 -130527592 + L1MD2 LINE L1 6165 6350 -9 9 752 1826 97 0 11 chr5 22009675 22009946 -130527313 + L1Md_F2 LINE L1 6315 6582 0 1 752 1201 34 14 0 chr5 22010017 22010163 -130527096 + B1_Mus1 SINE Alu 1 148 0 1 752 207 0 0 0 chr5 22010313 22010336 -130526923 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1 752 225 0 0 0 chr5 22010664 22010689 -130526570 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1 752 600 75 25 9 chr5 22010689 22010775 -130526484 - B2_Mm1a SINE B2 -33 160 78 1 752 372 22 0 0 chr5 22010780 22010825 -130526434 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1 752 1333 31 0 0 chr5 22010825 22010985 -130526274 - B2_Mm1a SINE B2 -33 160 1 1 752 243 200 40 0 chr5 22011278 22011328 -130525931 + RSINE1 SINE B4 114 165 0 1 752 259 273 71 0 chr5 22011804 22011903 -130525356 + L1MA5 LINE L1 6195 6300 0 1 752 308 152 0 15 chr5 22012535 22012602 -130524657 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 752 438 108 0 0 chr5 22012723 22012788 -130524471 + (CGTG)n Simple_repeat Simple_repeat 2 66 0 2 752 243 0 0 0 chr5 22013585 22013612 -130523647 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 752 26 0 0 0 chr5 22015397 22015423 -130521836 + AT_rich Low_complexity Low_complexity 1 26 0 2 752 28 0 0 0 chr5 22016310 22016338 -130520921 + AT_rich Low_complexity Low_complexity 1 28 0 2 752 718 65 120 0 chr5 22017058 22017166 -130520093 + B1_Mus1 SINE Alu 3 123 -25 2 752 3159 19 0 0 chr5 22019289 22019663 -130517596 + MT-int LTR MaLR 651 1024 -74 2 753 1196 48 7 0 chr5 22021550 22021696 -130515563 + B1_Mus1 SINE Alu 2 148 0 2 753 23 33 0 0 chr5 22021998 22022028 -130515231 + AT_rich Low_complexity Low_complexity 1 30 0 2 753 720 293 116 35 chr5 22022071 22022389 -130514870 - MER2 DNA MER2_type -1 344 1 2 753 2275 215 32 102 chr5 22024115 22024716 -130512543 + RMER19C LTR ERVK 1 559 -52 2 753 784 74 213 0 chr5 22024738 22024860 -130512399 - B1_Mus1 SINE Alu 0 148 1 3 753 477 96 84 0 chr5 22024885 22024968 -130512291 + B2_Mm1t SINE B2 103 192 -1 3 753 228 32 0 0 chr5 22024979 22025010 -130512249 + RMER19C LTR ERVK 581 611 0 2 753 524 279 97 38 chr5 22025158 22025423 -130511836 + MLT1J1 LTR MaLR 5 276 -168 3 753 232 270 31 73 chr5 22025448 22025544 -130511715 + MLT1J1 LTR MaLR 320 411 0 3 753 1176 75 0 0 chr5 22025992 22026139 -130511120 - B1_Mus1 SINE Alu 0 148 2 3 753 943 33 8 0 chr5 22026632 22026753 -130510506 + B1_Mus2 SINE Alu 26 147 0 3 753 669 148 15 69 chr5 22026952 22027083 -130510176 - B1_Mur1 SINE Alu -1 148 25 3 753 837 165 137 0 chr5 22027080 22027292 -130509967 - RCHARR1 DNA MER1_type -70 904 664 3 753 1097 265 262 3 chr5 22027382 22027757 -130509502 - RCHARR1 DNA MER1_type -423 551 80 3 753 240 163 0 0 chr5 22028343 22028386 -130508873 + CT-rich Low_complexity Low_complexity 1 43 0 3 753 204 67 0 0 chr5 22028466 22028496 -130508763 + (A)n Simple_repeat Simple_repeat 1 30 0 3 753 424 306 43 37 chr5 22028570 22028733 -130508526 + B4A SINE B4 46 209 -83 3 753 402 235 143 32 chr5 22029065 22029254 -130508005 - MER2 DNA MER2_type -51 294 85 4 753 766 73 184 8 chr5 22030176 22030301 -130506958 - B1_Mus1 SINE Alu 0 148 2 4 753 254 234 21 0 chr5 22031117 22031164 -130506095 - B1_Mus2 SINE Alu -98 49 2 4 753 265 227 101 11 chr5 22031391 22031480 -130505779 - L1MC4 LINE L1 -4569 1646 1550 4 753 21 71 0 0 chr5 22032461 22032503 -130504756 + AT_rich Low_complexity Low_complexity 1 42 0 4 753 195 319 93 31 chr5 22032753 22032850 -130504409 + MER5A DNA MER1_type 65 167 -22 4 753 1706 185 80 9 chr5 22033281 22033630 -130503629 - ORR1D1 LTR MaLR 0 374 1 4 753 846 268 94 51 chr5 22033677 22034050 -130503209 - RMER5 LTR ERV1 -141 393 5 4 753 644 333 56 51 chr5 22035693 22036085 -130501174 + MER21B LTR ERV1 415 808 -55 4 753 320 148 16 0 chr5 22036557 22036618 -130500641 + CT-rich Low_complexity Low_complexity 3 64 0 4 753 651 254 0 0 chr5 22036623 22036753 -130500506 - B1_Mus2 SINE Alu -17 130 1 5 753 1645 16 0 15 chr5 22037427 22037623 -130499636 + B2_Mm1a SINE B2 1 193 0 5 753 1134 118 107 10 chr5 22037771 22037976 -130499283 + URR1B DNA MER1_type 1 225 0 5 753 450 94 0 0 chr5 22039025 22039089 -130498170 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 753 413 189 11 0 chr5 22039277 22039367 -130497892 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 753 2571 93 60 0 chr5 22040168 22040554 -130496705 - L1_Mus3 LINE L1 -7 6631 6223 5 753 789 112 0 0 chr5 22040554 22040661 -130496598 - U6 snRNA snRNA 0 107 1 5 753 2180 159 88 34 chr5 22040698 22041142 -130496117 + RLTR18 LTR ERVK 149 616 0 5 753 437 261 42 0 chr5 22041402 22041521 -130495738 - RSINE1 SINE B4 -36 129 6 5 753 702 288 105 57 chr5 22042145 22042498 -130494761 + ORR1D2 LTR MaLR 1 370 0 5 753 183 42 0 0 chr5 22043730 22043754 -130493505 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 753 537 301 121 78 chr5 22044248 22044712 -130492547 - MLT1D LTR MaLR -16 489 6 6 753 1279 239 131 41 chr5 22044827 22045316 -130491943 - Lx8 LINE L1 -9 7464 6932 6 753 604 253 70 6 chr5 22045338 22045509 -130491750 - Lx8 LINE L1 -645 6828 6647 6 753 1362 169 293 21 chr5 22045511 22045849 -130491410 + RLTR23 LTR ERV1 1 430 0 6 753 180 0 0 0 chr5 22046658 22046678 -130490581 + (C)n Simple_repeat Simple_repeat 1 20 0 6 753 659 334 44 23 chr5 22046827 22047335 -130489924 + MuRRS4-int LTR ERV1 1073 1735 -5821 6 753 351 238 18 62 chr5 22047381 22047493 -130489766 + MuRRS4-int LTR ERV1 2987 3093 -4463 6 753 502 284 12 6 chr5 22048309 22048472 -130488787 + RNERVK23-int LTR ERVK 7400 7563 -654 6 753 1416 178 246 23 chr5 22048629 22048979 -130488280 + RLTR23 LTR ERV1 1 428 -2 6 753 513 279 73 24 chr5 22049858 22050023 -130487236 + Charlie1a DNA MER1_type 73 245 -1210 6 753 1012 210 33 0 chr5 22050044 22050225 -130487034 + B3 SINE B2 1 187 -29 6 753 426 69 17 0 chr5 22050282 22050340 -130486919 - MTB LTR MaLR 0 407 349 7 753 777 90 56 0 chr5 22050340 22050484 -130486775 + RMER17B LTR ERVK 312 463 -495 7 753 2493 91 25 3 chr5 22050508 22050861 -130486398 - MTB LTR MaLR -39 361 1 7 753 439 281 131 12 chr5 22050869 22051114 -130486145 + L1MDa LINE L1 68 341 -6292 7 753 687 145 8 8 chr5 22051140 22051272 -130485987 - MERVK26-int LTR ERVK -2092 4827 4696 7 753 1790 183 31 0 chr5 22051268 22051618 -130485641 - MERVK26-int LTR ERVK -4664 2255 1895 7 753 266 323 52 75 chr5 22051638 22051812 -130485447 + L2 LINE L2 2174 2343 -1076 7 753 249 294 78 0 chr5 22052781 22052883 -130484376 + LTR33 LTR ERVL 395 504 -11 7 753 188 287 147 10 chr5 22053574 22053676 -130483583 - MIR SINE MIR -53 209 94 7 753 983 38 0 63 chr5 22053913 22054055 -130483204 - B1_Mus2 SINE Alu -1 146 14 7 753 444 196 0 137 chr5 22053956 22054080 -130483179 - MT2B LTR ERVL -337 264 158 7 753 1182 211 155 28 chr5 22054359 22054681 -130482578 - MTC LTR MaLR -13 408 46 7 753 475 143 0 0 chr5 22057004 22057074 -130480185 - L1_Mur2 LINE L1 -339 5538 5469 8 753 4386 133 60 8 chr5 22057070 22057421 -130479838 - L1_Mur2 LINE L1 -660 5217 4864 8 753 543 16 0 0 chr5 22057421 22057485 -130479774 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 8 753 4386 133 60 8 chr5 22057485 22057712 -130479547 - L1_Mur2 LINE L1 -1014 4863 4633 8 753 243 0 0 0 chr5 22057712 22057739 -130479520 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 753 4386 147 103 7 chr5 22057739 22058068 -130479191 - L1_Mur2 LINE L1 -1245 4641 4193 8 753 237 281 0 0 chr5 22058203 22058260 -130478999 + (CAGTC)n Simple_repeat Simple_repeat 4 60 0 8 753 252 86 0 0 chr5 22059513 22059548 -130477711 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 8 753 276 111 0 0 chr5 22059688 22059733 -130477526 + (TGGGGG)n Simple_repeat Simple_repeat 3 47 0 8 753 3090 60 207 0 chr5 22060253 22060683 -130476576 - MURVY-LTR LTR ERV1 0 519 1 8 753 620 192 45 23 chr5 22061348 22061481 -130475778 + Lx3C LINE L1 6399 6534 -442 8 753 5106 120 42 34 chr5 22061467 22062788 -130474471 - L1_Mur2 LINE L1 -4032 1845 530 8 753 202 208 18 36 chr5 22062829 22062884 -130474375 + CT-rich Low_complexity Low_complexity 4 57 0 8 753 408 211 23 38 chr5 22063060 22063193 -130474066 - Lx7 LINE L1 0 7696 7566 9 753 1167 76 0 0 chr5 22063222 22063367 -130473892 + B1_Mus1 SINE Alu 3 147 -1 9 753 1139 124 17 22 chr5 22064113 22064294 -130472965 - B2_Mm2 SINE B2 -14 181 2 9 753 22 0 0 0 chr5 22064438 22064460 -130472799 + AT_rich Low_complexity Low_complexity 1 22 0 9 753 417 332 112 16 chr5 22064513 22064942 -130472317 - L1MEf LINE L1 -4640 2397 1928 9 753 412 255 108 51 chr5 22065133 22065444 -130471815 - MTEa LTR MaLR -7 372 1 9 753 203 133 0 0 chr5 22065550 22065580 -130471679 + (CTTTG)n Simple_repeat Simple_repeat 2 31 0 9 753 738 213 14 7 chr5 22065582 22065724 -130471535 - B1_Mur1 SINE Alu -1 148 6 9 753 314 315 45 0 chr5 22065850 22065939 -130471320 + PB1D10 SINE Alu 6 98 -19 9 753 267 54 0 0 chr5 22065941 22065978 -130471281 + (CAAT)n Simple_repeat Simple_repeat 3 39 0 9 753 225 273 39 0 chr5 22065996 22066073 -130471186 - L1MEf LINE L1 -5088 1335 1256 9 753 439 283 67 109 chr5 22066330 22066540 -130470719 - B4 SINE B4 0 292 92 1 753 4715 112 27 58 chr5 22066620 22067576 -130469683 + RLTR13D6 LTR ERVK 1 924 -59 1 753 266 312 91 45 chr5 22067817 22068059 -130469200 - L1MEf LINE L1 -6139 284 32 9 753 2540 148 226 37 chr5 22068148 22068662 -130468597 - RMER19C LTR ERVK 0 611 1 1 753 2468 245 109 19 chr5 22068702 22069588 -130467671 - RCHARR1 DNA MER1_type -6 968 3 1 753 261 83 0 0 chr5 22070272 22070308 -130466951 + (GAA)n Simple_repeat Simple_repeat 2 37 0 1 753 1115 102 0 0 chr5 22071049 22071196 -130466063 + B1_Mus1 SINE Alu 2 148 0 1 753 549 207 9 9 chr5 22071276 22071388 -130465871 + RodERV21-int LTR ERV1 4715 4826 -165 1 753 404 282 0 28 chr5 22071392 22071498 -130465761 + RMER4B LTR ERVK 349 451 -134 1 753 516 237 183 0 chr5 22071569 22071755 -130465504 + RMER21A LTR ERV1 394 613 -334 1 753 4505 12 2 0 chr5 22071934 22072426 -130464833 + MT2_Mm LTR ERVL 1 493 0 1 753 41433 15 14 0 chr5 22072426 22077715 -130459544 + MERVL-int LTR ERVL 1 5360 -125 1 753 362 167 46 35 chr5 22077715 22077802 -130459457 + ORR1A3-int LTR MaLR 553 640 -1323 1 753 321 0 0 0 chr5 22077802 22077840 -130459419 + MERVL-int LTR ERVL 5448 5485 0 1 753 4505 12 2 0 chr5 22077840 22078332 -130458927 + MT2_Mm LTR ERVL 1 493 0 1 753 274 281 66 33 chr5 22078428 22078579 -130458680 - LTR83 LTR ERVL -420 360 205 1 753 26 30 0 0 chr5 22078688 22078721 -130458538 + AT_rich Low_complexity Low_complexity 1 33 0 1 753 276 53 0 0 chr5 22078740 22078778 -130458481 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 753 187 373 74 28 chr5 22079170 22079385 -130457874 - L2 LINE L2 -939 2480 2256 1 753 231 284 13 13 chr5 22079505 22079580 -130457679 + B4A SINE B4 5 79 -213 1 753 1110 44 0 7 chr5 22081301 22081437 -130455822 - B1_Mus2 SINE Alu -11 136 2 1 753 270 0 0 0 chr5 22081437 22081467 -130455792 + (A)n Simple_repeat Simple_repeat 1 30 0 1 753 618 167 40 0 chr5 22081497 22081623 -130455636 - RMER17C LTR ERVK 0 410 280 1 753 269 167 14 57 chr5 22081727 22081797 -130455462 - L1ME1 LINE L1 -204 5975 5909 1 753 2996 162 37 26 chr5 22081866 22082406 -130454853 - RMER1A Other Other -22 1008 463 1 753 260 224 14 32 chr5 22082400 22082494 -130454765 - L1ME1 LINE L1 -270 5909 5819 1 753 23 0 0 0 chr5 22082620 22082643 -130454616 + AT_rich Low_complexity Low_complexity 1 23 0 1 753 22 0 0 0 chr5 22082767 22082789 -130454470 + AT_rich Low_complexity Low_complexity 1 22 0 1 753 207 100 0 0 chr5 22082857 22082887 -130454372 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 753 824 269 196 72 chr5 22082980 22083581 -130453678 + Tigger6a DNA MER2_type 5 680 -403 1 753 717 217 139 16 chr5 22084945 22085132 -130452127 - B3 SINE B2 -6 210 1 1 753 498 349 99 45 chr5 22087624 22088129 -130449130 + MT2A LTR ERVL 2 533 0 1 753 181 232 92 58 chr5 22088434 22088521 -130448738 + MIR SINE MIR 21 110 -98 1 753 738 266 85 10 chr5 22088705 22088906 -130448353 - B3 SINE B2 0 216 1 1 753 1764 109 149 6 chr5 22090562 22090890 -130446369 - RLTR14 LTR ERV1 -7 375 1 1 753 987 279 53 101 chr5 22090981 22091379 -130445880 - MTE2b LTR MaLR 0 379 1 1 753 194 107 35 35 chr5 22093976 22094034 -130443225 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 753 914 328 56 20 chr5 22094358 22094700 -130442559 + ORR1E LTR MaLR 1 354 -5 1 753 261 0 0 0 chr5 22094977 22095006 -130442253 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 753 585 360 77 23 chr5 22095468 22095820 -130441439 + LTR16A LTR ERVL 16 386 -65 1 753 7674 72 16 1 chr5 22095840 22097104 -130440155 - L1_Mus1 LINE L1 0 6567 5288 1 753 7179 67 15 4 chr5 22097098 22098544 -130438715 - L1Md_F2 LINE L1 -3 6579 5108 1 753 2376 100 80 0 chr5 22098544 22098895 -130438364 - L1_Mus1 LINE L1 -5623 993 615 1 753 9284 27 1 21 chr5 22098887 22100612 -130436647 - L1Md_A LINE L1 -3578 2305 624 1 753 2598 217 59 81 chr5 22101353 22102364 -130434895 + RMER1B Other Other 56 1050 -16 1 753 1920 168 105 26 chr5 22103048 22103438 -130433821 - MTC LTR MaLR 0 421 1 1 753 206 105 0 26 chr5 22104450 22104489 -130432770 + (TTC)n Simple_repeat Simple_repeat 2 39 0 1 753 36209 52 3 0 chr5 22104494 22105777 -130431482 - L1Md_F2 LINE L1 0 6582 5294 1 753 5912 43 0 0 chr5 22105777 22106474 -130430785 - L1Md_T LINE L1 -2 6580 5884 1 753 36209 79 4 17 chr5 22106474 22111550 -130425709 - L1Md_F2 LINE L1 -590 5293 286 1 753 1035 100 0 0 chr5 22111551 22111701 -130425558 + (TTC)n Simple_repeat Simple_repeat 3 152 0 1 753 507 218 14 7 chr5 22111705 22111848 -130425411 + CT-rich Low_complexity Low_complexity 3 146 0 1 753 464 247 0 20 chr5 22111896 22111995 -130425264 - B1_Mus2 SINE Alu -37 110 14 1 753 385 167 51 13 chr5 22112005 22112084 -130425175 + B1_Mur3 SINE Alu 62 143 -6 1 753 258 32 0 0 chr5 22112345 22112376 -130424883 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 753 12148 125 30 8 chr5 22112416 22114957 -130422302 + L1Md_F LINE L1 237 2870 -947 1 753 276 312 62 38 chr5 22114959 22115169 -130422090 + RMER17C LTR ERVK 133 347 -63 1 753 434 181 0 82 chr5 22115187 22115255 -130422004 + B1_Mur3 SINE Alu 59 127 -22 1 753 2461 185 57 45 chr5 22115255 22115748 -130421511 - RLTR19 LTR ERVK 0 499 1 1 753 434 177 0 81 chr5 22115748 22115776 -130421483 + B1_Mur3 SINE Alu 128 149 0 1 753 606 251 38 38 chr5 22116609 22116795 -130420464 - RLTR28B LTR ERVL -295 186 1 1 753 1085 232 34 26 chr5 22116795 22117061 -130420198 + RLTR24 LTR ERV1 262 529 0 1 753 410 221 84 0 chr5 22117173 22117268 -130419991 + B4A SINE B4 105 207 -85 1 753 240 319 0 55 chr5 22117461 22117534 -130419725 + B4A SINE B4 211 279 -13 1 753 468 0 0 0 chr5 22117548 22117600 -130419659 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 753 405 39 0 0 chr5 22118029 22118080 -130419179 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 753 191 294 0 0 chr5 22118119 22118170 -130419089 + MIR SINE MIR 121 171 -91 1 753 218 0 95 0 chr5 22118367 22118409 -130418850 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 1 753 429 90 0 0 chr5 22119237 22119304 -130417955 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 753 304 298 27 71 chr5 22119338 22119450 -130417809 - B4A SINE B4 0 292 186 1 753 1403 243 89 37 chr5 22119529 22119671 -130417588 - Lx7 LINE L1 -14 7682 7547 1 753 1215 76 0 0 chr5 22119671 22119816 -130417443 + B1_Mus1 SINE Alu 2 146 -2 1 753 1403 243 89 37 chr5 22119816 22120165 -130417094 - Lx7 LINE L1 -150 7546 7165 1 753 324 289 133 55 chr5 22120173 22120301 -130416958 - B4A SINE B4 -154 138 1 1 753 428 322 38 29 chr5 22120301 22120541 -130416718 - L1MCb LINE L1 -5288 757 516 1 753 1281 83 55 11 chr5 22120580 22120763 -130416496 + B2_Mm2 SINE B2 1 191 -4 1 753 253 307 34 11 chr5 22120823 22120912 -130416347 - L1MCb LINE L1 -5701 344 254 1 753 1309 27 0 13 chr5 22120973 22121122 -130416137 + B1_Mus2 SINE Alu 1 147 0 1 753 222 37 0 0 chr5 22121122 22121149 -130416110 + (A)n Simple_repeat Simple_repeat 1 27 0 1 753 279 211 19 0 chr5 22121391 22121443 -130415816 - PB1D7 SINE Alu -6 114 62 1 753 1210 231 118 24 chr5 22121581 22121963 -130415296 + MTD LTR MaLR 2 419 0 1 753 2382 133 0 0 chr5 22121968 22122291 -130414968 - ORR1A2 LTR MaLR -1 326 4 1 753 2293 260 48 28 chr5 22122390 22122738 -130414521 - Lx6 LINE L1 -9 7451 7097 1 753 2514 99 150 5 chr5 22122738 22123105 -130414154 - RLTR9B2 LTR ERVK 0 420 1 1 753 2293 260 48 28 chr5 22123105 22123404 -130413855 - Lx6 LINE L1 -364 7096 6792 1 753 1966 125 102 118 chr5 22123405 22123719 -130413540 + ORR1B1 LTR MaLR 1 348 -46 1 753 1177 79 0 0 chr5 22123719 22123858 -130413401 + B1_Mm SINE Alu 1 139 -8 1 753 1966 125 102 118 chr5 22123858 22123943 -130413316 + ORR1B1 LTR MaLR 349 394 0 1 753 1501 123 15 47 chr5 22123943 22124217 -130413042 + ORR1B1-int LTR MaLR 1 265 -1244 1 753 311 131 0 2 chr5 22124200 22124252 -130413007 + ORR1B1-int LTR MaLR 460 518 -1274 1 753 8073 78 13 14 chr5 22124252 22126174 -130411085 + L1VL4 LINE L1 76 1990 -1569 1 753 7292 117 7 12 chr5 22126160 22127410 -130409849 + Lx2 LINE L1 5395 6643 -354 1 753 1319 128 64 0 chr5 22127401 22127620 -130409639 + Lx2 LINE L1 6765 6997 0 1 753 455 204 0 0 chr5 22127637 22127725 -130409534 + ORR1B1-int LTR MaLR 535 622 -887 1 753 563 234 55 31 chr5 22127733 22127861 -130409398 + B1_Mur3 SINE Alu 3 133 -16 1 753 310 239 0 40 chr5 22127869 22127943 -130409316 + ORR1B1-int LTR MaLR 884 954 -555 1 753 745 208 62 9 chr5 22127943 22128170 -130409089 - RMER6-int LTR ERVK -4450 4509 4298 1 753 369 222 48 36 chr5 22128197 22128281 -130408978 - LSU-rRNA_Hsa rRNA rRNA -3174 1861 1777 1 753 9203 155 62 20 chr5 22128281 22130662 -130406597 - RMER6-int LTR ERVK -660 2517 1 1 753 1736 154 251 100 chr5 22130668 22131409 -130405850 - RMER6C LTR ERVK 0 720 19 1 753 1523 182 143 0 chr5 22131419 22131726 -130405533 + ORR1B1 LTR MaLR 24 374 -20 1 753 3828 224 46 67 chr5 22131726 22132734 -130404525 - Lx7 LINE L1 -892 6804 5818 1 753 443 246 88 83 chr5 22132765 22132969 -130404290 - RMER2 LTR ERV1 -29 538 334 1 753 9830 162 34 48 chr5 22133227 22133294 -130403965 - Lx7 LINE L1 -54 5826 5764 1 753 3316 58 8 2 chr5 22133294 22133688 -130403571 + MTA_Mm LTR MaLR 1 396 0 1 753 8673 74 10 6 chr5 22133690 22134782 -130402477 + MTA_Mm-int LTR MaLR 3 1098 0 1 753 3073 61 48 3 chr5 22134782 22135161 -130402098 + MTA_Mm LTR MaLR 1 396 0 1 753 9830 162 34 48 chr5 22135161 22135649 -130401610 - Lx7 LINE L1 -117 5763 5269 1 753 4280 154 34 27 chr5 22135649 22136364 -130400895 + RMER6D LTR ERVK 1 720 0 1 753 9830 162 34 48 chr5 22136364 22137572 -130399687 - Lx7 LINE L1 -612 5268 4097 1 753 1193 82 0 0 chr5 22137572 22137718 -130399541 + B1_Mm SINE Alu 1 146 -1 1 753 9830 162 34 48 chr5 22137718 22138001 -130399258 - Lx7 LINE L1 -1784 4096 3805 1 753 1110 192 94 0 chr5 22138351 22138596 -130398663 - Lx7 LINE L1 -2030 3850 3583 1 753 3745 166 34 8 chr5 22138597 22139728 -130397531 - Lx7 LINE L1 -3899 1981 815 1 753 455 169 0 0 chr5 22139723 22139800 -130397459 - Lx7 LINE L1 -7380 348 272 1 753 268 275 29 0 chr5 22140517 22140586 -130396673 + PB1D9 SINE Alu 44 114 -6 1 753 249 241 17 0 chr5 22140595 22140653 -130396606 + GA-rich Low_complexity Low_complexity 4 62 0 1 753 794 184 126 0 chr5 22141003 22141177 -130396082 - L1_Mur3 LINE L1 -2057 3823 3628 1 753 7391 90 22 12 chr5 22141177 22141880 -130395379 - Lx3_Mus LINE L1 -374 6635 5925 1 753 414 57 0 0 chr5 22141880 22141933 -130395326 + (CTA)n Simple_repeat Simple_repeat 1 53 0 1 753 7707 77 2 14 chr5 22141933 22143004 -130394255 - Lx3_Mus LINE L1 -1085 5924 4855 1 753 2248 80 25 3 chr5 22143005 22143320 -130393939 + L1_Mur1 LINE L1 4341 4662 -1224 1 753 225 0 0 0 chr5 22143320 22143345 -130393914 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 753 990 104 7 0 chr5 22143354 22143489 -130393770 - B1_Mm SINE Alu 0 147 12 1 753 4415 169 21 24 chr5 22144723 22145531 -130391728 + Lx2B LINE L1 6039 6844 -156 1 753 2423 189 12 43 chr5 22145556 22146043 -130391216 - Lx4B LINE L1 -2 7056 6585 1 753 21 0 0 0 chr5 22146461 22146482 -130390777 + AT_rich Low_complexity Low_complexity 1 21 0 1 753 1524 189 64 47 chr5 22146662 22147058 -130390201 + RMER16 LTR ERVK 1 533 0 1 753 605 322 14 0 chr5 22148540 22148683 -130388576 - RSINE1 SINE B4 0 165 21 1 753 267 374 81 0 chr5 22148695 22148818 -130388441 - MLT1A LTR MaLR -39 351 219 1 753 251 299 65 0 chr5 22148827 22148904 -130388355 - PB1D10 SINE Alu -2 115 34 1 753 411 307 28 16 chr5 22149029 22149211 -130388048 - L1MA6 LINE L1 -97 6203 6020 1 753 433 333 0 30 chr5 22149222 22149389 -130387870 - MLT1A LTR MaLR -212 162 1 1 753 747 62 0 0 chr5 22149745 22149842 -130387417 + (TCCC)n Simple_repeat Simple_repeat 4 100 0 2 753 443 287 14 29 chr5 22150176 22150316 -130386943 - B1F SINE Alu 0 149 12 2 753 350 252 32 40 chr5 22150569 22150693 -130386566 - Lx8 LINE L1 -352 7121 6999 2 94 4811 166 38 78 chr5 22150714 22151443 -130385816 - RLTR25B LTR ERVK 0 1028 326 2 754 4403 49 0 0 chr5 22151443 22151949 -130385310 - L1Md_F2 LINE L1 -8 6574 6069 2 754 4811 166 38 78 chr5 22151949 22152290 -130384969 - RLTR25B LTR ERVK -703 325 1 2 754 4473 97 5 12 chr5 22152714 22153309 -130383950 - L1_Mus3 LINE L1 -2 6636 6046 2 754 1778 69 39 0 chr5 22153310 22153542 -130383717 + L1_Mus3 LINE L1 5775 6015 -623 2 754 3310 189 111 22 chr5 22153937 22154614 -130382645 - RMER19A LTR ERVK 0 737 1 2 754 260 227 11 33 chr5 22156865 22156956 -130380303 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 754 1066 121 12 0 chr5 22157384 22157549 -130379710 + URR1A DNA MER1_type 60 226 0 2 754 822 113 0 0 chr5 22157842 22157966 -130379293 + (TTCC)n Simple_repeat Simple_repeat 4 127 0 2 754 944 245 31 0 chr5 22157976 22158168 -130379091 - B3 SINE B2 -17 199 2 2 754 1674 271 112 42 chr5 22159050 22159669 -130377590 + Lx6 LINE L1 6367 7028 -432 2 754 689 134 32 1 chr5 22159672 22159813 -130377446 + RMER19A LTR ERVK 1 201 -536 2 754 9158 120 8 16 chr5 22159813 22161215 -130376044 - L1_Mus3 LINE L1 -60 5823 4433 2 754 5504 110 24 10 chr5 22161216 22161999 -130375260 + L1_Mus3 LINE L1 5839 6632 -6 2 754 1093 259 106 48 chr5 22161999 22162398 -130374861 + RMER19A LTR ERVK 188 697 -40 2 754 1297 224 161 20 chr5 22162432 22162779 -130374480 + Lx6 LINE L1 7054 7449 -11 2 754 267 31 0 0 chr5 22163946 22163978 -130373281 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 754 351 0 0 0 chr5 22164251 22164290 -130372969 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 754 348 24 0 0 chr5 22164290 22164330 -130372929 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 754 897 295 16 63 chr5 22164705 22165020 -130372239 - AmnSINE1 SINE SINE -94 481 182 2 754 3612 70 29 2 chr5 22166485 22166968 -130370291 - LTRIS2 LTR ERV1 0 564 69 2 754 268 343 92 28 chr5 22167390 22167615 -130369644 + MIRb SINE MIR 18 264 -4 2 754 483 339 106 89 chr5 22168286 22168665 -130368594 - MLT1F2 LTR MaLR -3 557 170 2 754 679 326 40 88 chr5 22168665 22169042 -130368217 - MLT1A0 LTR MaLR -2 363 5 2 754 483 339 106 89 chr5 22169042 22169190 -130368069 - MLT1F2 LTR MaLR -391 169 21 2 754 300 264 120 19 chr5 22169576 22169684 -130367575 - MLT1L LTR MaLR -471 139 21 2 754 733 322 71 20 chr5 22169755 22170050 -130367209 + MLT1D LTR MaLR 74 383 -122 2 754 4615 44 4 0 chr5 22170267 22170789 -130366470 - L1Md_T LINE L1 0 6582 6059 2 754 8369 16 0 1 chr5 22170790 22171917 -130365342 + L1Md_T LINE L1 4944 6069 -513 2 754 314 281 33 33 chr5 22172048 22172140 -130365119 + MLT1D LTR MaLR 382 473 -32 2 754 406 277 43 49 chr5 22172310 22172473 -130364786 - L1MA6 LINE L1 -2 6298 6137 2 754 2404 135 8 24 chr5 22174160 22174531 -130362728 - ORR1B2 LTR MaLR -2 365 1 2 754 436 281 119 39 chr5 22174722 22174925 -130362334 + MTD LTR MaLR 1 204 -203 2 754 867 279 65 35 chr5 22174925 22175323 -130361936 + Lx9 LINE L1 7212 7621 -23 2 754 351 211 177 20 chr5 22175416 22175562 -130361697 + MTD LTR MaLR 238 406 -13 2 754 405 0 0 0 chr5 22176386 22176431 -130360828 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 754 183 42 0 0 chr5 22176590 22176614 -130360645 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 754 342 0 0 0 chr5 22177575 22177613 -130359646 + (A)n Simple_repeat Simple_repeat 1 38 0 2 754 960 215 227 47 chr5 22177708 22178025 -130359234 + ORR1D1 LTR MaLR 1 374 0 2 754 407 303 30 89 chr5 22178136 22178339 -130358920 - MER20 DNA MER1_type -2 217 27 2 754 280 309 85 26 chr5 22178616 22178769 -130358490 + MamGypLTR1a LTR Gypsy 623 784 0 2 754 969 165 6 29 chr5 22179258 22179442 -130357817 - Lx9 LINE L1 -653 6991 6709 2 754 2718 173 118 7 chr5 22179445 22180014 -130357245 + Lx9 LINE L1 7007 7638 -6 2 754 21 57 0 0 chr5 22180147 22180182 -130357077 + AT_rich Low_complexity Low_complexity 1 35 0 2 754 255 255 0 19 chr5 22180369 22180421 -130356838 + RSINE1 SINE B4 21 71 -94 2 754 1910 189 67 8 chr5 22180425 22180815 -130356444 - MTC LTR MaLR -8 413 1 2 754 222 118 0 0 chr5 22180901 22180935 -130356324 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 2 754 244 241 12 25 chr5 22181696 22181777 -130355482 + L1M5 LINE L1 3814 3893 -2253 2 754 3241 270 128 8 chr5 22181921 22182032 -130355227 + Lx8 LINE L1 6052 6174 -1299 2 754 428 121 0 11 chr5 22182032 22182124 -130355135 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 2 754 3241 270 128 8 chr5 22182124 22183080 -130354179 + Lx8 LINE L1 6175 7246 -227 2 754 3371 50 16 16 chr5 22183081 22183509 -130353750 - Lx3A LINE L1 -967 6014 5587 2 754 3982 108 24 13 chr5 22183521 22184073 -130353186 + Lx3A LINE L1 6421 6978 -3 2 754 299 285 194 14 chr5 22184089 22184228 -130353031 + Lx8 LINE L1 7248 7411 -62 2 754 1540 205 117 6 chr5 22184385 22184718 -130352541 + ORR1D1 LTR MaLR 1 370 -4 2 754 35735 62 8 7 chr5 22185416 22188152 -130349107 + L1Md_F2 LINE L1 415 3141 -2742 2 754 4453 29 0 0 chr5 22188152 22188634 -130348625 - LTRIS_Mm LTR ERV1 0 482 1 2 754 35735 60 7 4 chr5 22188634 22191516 -130345743 + L1Md_F2 LINE L1 3142 6045 -537 2 754 3122 64 0 3 chr5 22191511 22191903 -130345356 + L1Md_F2 LINE L1 6191 6581 -1 2 754 975 88 88 7 chr5 22191920 22192057 -130345202 + B1_Mus1 SINE Alu 1 148 0 2 754 337 89 15 15 chr5 22192057 22192125 -130345134 + (CAAAA)n Simple_repeat Simple_repeat 1 68 0 2 754 746 31 10 0 chr5 22192251 22192348 -130344911 + (TC)n Simple_repeat Simple_repeat 1 98 0 2 754 271 326 72 85 chr5 22192714 22192949 -130344310 + MIR SINE MIR 3 234 -28 2 754 13321 91 7 2 chr5 22192960 22195502 -130341757 + L1_Mus2 LINE L1 4008 6564 -2 2 754 832 250 50 0 chr5 22195542 22195722 -130341537 + B3 SINE B2 20 208 -8 2 754 279 0 0 0 chr5 22195912 22195943 -130341316 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 754 350 0 44 0 chr5 22196360 22196405 -130340854 + (AGTTG)n Simple_repeat Simple_repeat 2 48 0 2 754 715 194 90 0 chr5 22196707 22196841 -130340418 + B1_Mur2 SINE Alu 3 148 -1 2 754 295 220 0 21 chr5 22196846 22196939 -130340320 + GA-rich Low_complexity Low_complexity 1 91 0 2 754 370 211 120 20 chr5 22197398 22197548 -130339711 - L1M5 LINE L1 -691 5482 5318 2 754 500 293 45 26 chr5 22197568 22197722 -130339537 - RSINE1 SINE B4 0 165 9 2 754 207 0 0 0 chr5 22198761 22198784 -130338475 + (T)n Simple_repeat Simple_repeat 1 23 0 2 754 414 0 0 0 chr5 22200806 22200852 -130336407 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 754 36803 65 1 13 chr5 22200900 22206987 -130330272 - L1Md_F2 LINE L1 -12 6570 561 2 754 250 360 64 0 chr5 22207019 22207144 -130330115 - B1F1 SINE Alu -12 137 5 2 754 390 69 0 0 chr5 22207320 22207378 -130329881 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 754 648 264 20 14 chr5 22207382 22207528 -130329731 - B3A SINE B2 -50 148 2 2 754 583 128 18 0 chr5 22207631 22207740 -130329519 + (GA)n Simple_repeat Simple_repeat 2 112 0 2 754 294 217 117 0 chr5 22207764 22207824 -130329435 - RSINE1 SINE B4 -97 68 2 2 754 627 14 0 0 chr5 22207869 22207941 -130329318 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 754 343 257 0 14 chr5 22207945 22208016 -130329243 - ID4 SINE ID -12 71 2 2 754 368 274 106 50 chr5 22208577 22208738 -130328521 + Lx8 LINE L1 7291 7460 -13 2 754 237 305 119 37 chr5 22209035 22209144 -130328115 + MLT1A1 LTR MaLR 259 376 -32 2 754 1157 98 6 0 chr5 22209284 22209458 -130327801 + (TCTA)n Simple_repeat Simple_repeat 2 176 0 2 754 4460 93 29 35 chr5 22209463 22210251 -130327008 - L1_Mus2 LINE L1 0 6566 5940 2 754 913 91 0 15 chr5 22210252 22210386 -130326873 - L1_Mus2 LINE L1 0 6566 6435 2 754 6921 66 30 14 chr5 22210386 22211046 -130326213 - L1_Mus2 LINE L1 -595 5971 5298 2 754 213 39 0 0 chr5 22211046 22211072 -130326187 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 754 423 56 0 0 chr5 22211077 22211131 -130326128 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 754 6921 95 57 32 chr5 22211131 22211229 -130326030 - L1_Mus2 LINE L1 -591 5292 5179 2 754 870 127 28 7 chr5 22211229 22211372 -130325887 - B1_Mus1 SINE Alu 0 148 3 2 754 6921 95 57 32 chr5 22211372 22211744 -130325515 - L1_Mus2 LINE L1 -705 5178 4806 2 754 2477 211 126 74 chr5 22211744 22212599 -130324660 + RLTR13D6 LTR ERVK 1 900 -2 2 754 3625 113 13 57 chr5 22212599 22213211 -130324048 - L1_Mm LINE L1 -1079 4804 4220 2 754 12013 21 0 0 chr5 22213210 22214571 -130322688 + L1Md_T LINE L1 4226 5586 -297 2 754 8555 56 0 0 chr5 22214571 22215597 -130321662 + L1Md_T LINE L1 5587 6582 0 2 754 225 0 0 0 chr5 22215605 22215630 -130321629 + (A)n Simple_repeat Simple_repeat 1 25 0 2 754 513 0 0 0 chr5 22215645 22215702 -130321557 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 754 3112 113 32 2 chr5 22215702 22216170 -130321089 - L1_Mur2 LINE L1 -1689 4188 3707 2 754 16491 110 10 16 chr5 22221478 22223523 -130313736 + L1_Mm LINE L1 2382 4442 -1441 2 754 976 67 7 0 chr5 22223523 22223658 -130313601 + L1_Mus1 LINE L1 6432 6567 0 2 754 16491 110 10 16 chr5 22223658 22224127 -130313132 + L1_Mm LINE L1 4443 4882 -1001 2 754 245 231 15 0 chr5 22224173 22224238 -130313021 + BLACKJACK DNA AcHobo 782 847 -2097 2 754 296 268 97 106 chr5 22224527 22224941 -130312318 - L1MC5 LINE L1 -164 7797 7388 2 754 444 266 108 19 chr5 22224945 22225102 -130312157 + Lx8 LINE L1 7290 7460 -13 2 754 1101 108 0 0 chr5 22225665 22225832 -130311427 + (TC)n Simple_repeat Simple_repeat 1 167 0 2 754 252 250 83 0 chr5 22225841 22225901 -130311358 - ID2 SINE ID -17 66 2 2 754 466 172 0 0 chr5 22225912 22226011 -130311248 + (CATATA)n Simple_repeat Simple_repeat 3 101 0 2 754 7750 74 2 1 chr5 22226158 22227217 -130310042 - L1_Mus1 LINE L1 -1 6566 5507 2 754 280 308 99 57 chr5 22227311 22227714 -130309545 - L1M5 LINE L1 -2081 4065 3646 2 754 3059 68 10 0 chr5 22228304 22228700 -130308559 + MTB LTR MaLR 1 400 0 2 754 23 0 0 0 chr5 22229795 22229818 -130307441 + AT_rich Low_complexity Low_complexity 1 23 0 2 754 200 35 35 0 chr5 22229826 22229855 -130307404 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 2 754 4242 102 23 28 chr5 22232079 22232732 -130304527 - L1_Mus3 LINE L1 0 6638 5989 2 754 747 102 0 0 chr5 22233322 22233450 -130303809 + (TC)n Simple_repeat Simple_repeat 1 128 0 2 754 285 51 0 0 chr5 22233450 22233488 -130303771 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 754 1013 255 94 3 chr5 22233524 22233823 -130303436 - MLT2C2 LTR ERVL -138 326 1 3 754 561 250 28 70 chr5 22233842 22234026 -130303233 - B3A SINE B2 0 216 44 3 754 219 191 24 0 chr5 22234041 22234083 -130303176 + CT-rich Low_complexity Low_complexity 1 43 0 3 754 1158 88 0 0 chr5 22234129 22234277 -130302982 - B1_Mus1 SINE Alu 0 148 1 3 754 34 0 0 0 chr5 22234284 22234318 -130302941 + AT_rich Low_complexity Low_complexity 1 34 0 3 754 3673 67 4 0 chr5 22234318 22234784 -130302475 - L1_Mus1 LINE L1 -2 6565 6098 3 754 1720 85 0 8 chr5 22235371 22235608 -130301651 + L1_Mus2 LINE L1 6332 6566 0 3 754 3915 20 0 0 chr5 22235626 22236073 -130301186 + L1Md_T LINE L1 5140 5586 -297 3 754 8549 35 0 2 chr5 22236073 22237093 -130300166 + L1Md_T LINE L1 5587 6582 0 3 754 378 0 0 0 chr5 22237106 22237148 -130300111 + (A)n Simple_repeat Simple_repeat 1 42 0 3 754 1104 73 0 0 chr5 22237203 22237340 -130299919 + B1_Mm SINE Alu 1 137 -10 3 754 207 0 0 0 chr5 22237340 22237363 -130299896 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 754 250 204 0 0 chr5 22237454 22237503 -130299756 - B1_Mur1 SINE Alu -43 106 58 3 754 764 143 137 0 chr5 22237608 22237769 -130299490 + B2_Mm2 SINE B2 5 187 -8 3 754 231 36 0 0 chr5 22238064 22238092 -130299167 + (T)n Simple_repeat Simple_repeat 1 28 0 3 754 356 150 36 36 chr5 22238098 22238181 -130299078 - B1_Mur4 SINE Alu 0 150 68 3 754 586 170 43 29 chr5 22238160 22238299 -130298960 - B3A SINE B2 -57 141 1 3 754 245 231 205 53 chr5 22238379 22238398 -130298861 - L1M4b LINE L1 -4056 3046 3030 3 754 2411 96 9 0 chr5 22238398 22238722 -130298537 - ORR1A2 LTR MaLR 0 327 1 3 754 245 231 205 53 chr5 22238722 22238853 -130298406 - L1M4b LINE L1 -4073 3029 2873 3 754 1168 62 0 18 chr5 22238853 22239017 -130298242 - L1Md_F2 LINE L1 -6 6576 6416 3 754 404 212 25 0 chr5 22239046 22239126 -130298133 + B3A SINE B2 3 84 -114 3 754 429 253 47 58 chr5 22239140 22239312 -130297947 - L1M4b LINE L1 -4319 2783 2614 3 754 703 189 9 18 chr5 22239414 22239642 -130297617 + CT-rich Low_complexity Low_complexity 1 225 0 3 754 283 365 0 0 chr5 22239645 22239749 -130297510 - PB1D7 SINE Alu -16 104 1 3 754 417 189 133 0 chr5 22239809 22239899 -130297360 + RSINE1 SINE B4 10 111 -54 3 754 618 164 58 121 chr5 22239901 22240074 -130297185 - MTE2b LTR MaLR -200 179 18 3 754 682 266 25 25 chr5 22240149 22240311 -130296948 - RSINE1 SINE B4 -2 163 2 3 754 1177 246 275 8 chr5 22240311 22240795 -130296464 - MTE2b-int LTR MaLR -26 1554 942 3 754 306 279 0 0 chr5 22240793 22240861 -130296398 - MTE2b LTR MaLR -250 129 62 3 754 738 335 14 31 chr5 22240970 22241257 -130296002 + B4A SINE B4 11 292 0 3 754 1179 196 52 3 chr5 22241548 22241899 -130295360 - RMER10B LTR ERVL 0 398 3 3 754 371 272 73 87 chr5 22241943 22242013 -130295246 - L1M4b LINE L1 -4718 2384 2315 3 754 1171 57 139 0 chr5 22242013 22242171 -130295088 + B2_Mm2 SINE B2 2 181 -14 3 754 371 272 73 87 chr5 22242171 22242455 -130294804 - L1M4b LINE L1 -4788 2314 2036 3 754 282 267 40 0 chr5 22242473 22242548 -130294711 - B4A SINE B4 0 292 215 3 754 509 158 10 10 chr5 22242569 22242671 -130294588 + B3 SINE B2 4 105 -111 3 754 746 292 43 30 chr5 22242839 22243167 -130294092 - L1MD1 LINE L1 -84 6158 5827 3 754 312 91 0 0 chr5 22243374 22243418 -130293841 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 754 674 272 32 58 chr5 22243418 22243726 -130293533 - L1M4b LINE L1 -5711 1623 1324 3 754 295 364 93 28 chr5 22243891 22244255 -130293004 - Lx8 LINE L1 -98 7375 6988 3 754 1101 189 91 23 chr5 22244779 22244878 -130292381 - Lx9 LINE L1 -66 7578 7483 3 754 411 21 0 0 chr5 22244878 22244926 -130292333 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 754 1101 189 91 23 chr5 22244926 22245135 -130292124 - Lx9 LINE L1 -162 7482 7250 3 754 660 200 15 15 chr5 22245129 22245261 -130291998 - Lx9 LINE L1 -655 6989 6858 3 754 1682 211 136 20 chr5 22245347 22245797 -130291462 + Lx7 LINE L1 307 808 -6920 3 754 3950 185 56 9 chr5 22245793 22246580 -130290679 + Lx7 LINE L1 6363 7186 -510 3 754 381 263 42 0 chr5 22246582 22246677 -130290582 + Lx7 LINE L1 7550 7648 -48 3 754 240 323 55 31 chr5 22247412 22247540 -130289719 + Helitron3Na_Mam RC Helitron 201 331 -155 3 754 405 282 111 0 chr5 22247664 22247781 -130289478 - RSINE1 SINE B4 -28 137 8 3 754 252 268 0 89 chr5 22247911 22248046 -130289213 + GA-rich Low_complexity Low_complexity 4 126 0 3 754 1377 162 14 0 chr5 22248951 22249173 -130288086 + URR1A DNA MER1_type 1 225 -1 3 754 210 37 0 0 chr5 22249821 22249848 -130287411 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 754 198 150 0 0 chr5 22251969 22252009 -130285250 + (GGA)n Simple_repeat Simple_repeat 1 40 0 3 754 180 0 0 0 chr5 22252019 22252039 -130285220 + (CCG)n Simple_repeat Simple_repeat 3 22 0 3 754 438 53 0 0 chr5 22252768 22252825 -130284434 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 754 282 250 43 21 chr5 22253716 22253810 -130283449 - PB1D7 SINE Alu -3 117 22 3 754 27 73 0 0 chr5 22254330 22254385 -130282874 + AT_rich Low_complexity Low_complexity 1 55 0 3 754 638 228 0 26 chr5 22255237 22255390 -130281869 + B1_Mur2 SINE Alu 1 149 0 3 754 301 280 20 0 chr5 22255416 22255516 -130281743 + HAL1-2a_MD LINE L1 2390 2491 -533 3 754 198 0 0 0 chr5 22255521 22255543 -130281716 + (CAA)n Simple_repeat Simple_repeat 1 22 0 3 754 194 318 202 17 chr5 22256727 22256900 -130280359 + MIR SINE MIR 34 238 -24 3 754 425 257 53 95 chr5 22259143 22259191 -130278068 - B2_Mm2 SINE B2 -3 192 143 3 754 699 69 0 0 chr5 22259191 22259293 -130277966 + (TC)n Simple_repeat Simple_repeat 2 103 0 3 754 423 0 0 0 chr5 22259293 22259339 -130277920 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 754 701 202 23 3 chr5 22259339 22259478 -130277781 - B3A SINE B2 -49 149 12 3 754 8038 59 1 1 chr5 22259901 22260970 -130276289 - L1_Mus2 LINE L1 0 6566 5498 3 754 216 0 0 0 chr5 22263882 22263906 -130273353 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 754 723 12 0 0 chr5 22264299 22264383 -130272876 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 754 250 145 48 0 chr5 22264878 22264940 -130272319 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 754 249 33 0 0 chr5 22265057 22265087 -130272172 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 754 192 40 0 0 chr5 22265092 22265117 -130272142 + (TTG)n Simple_repeat Simple_repeat 1 25 0 3 754 210 322 0 0 chr5 22265134 22265193 -130272066 - ID4_ SINE ID -7 76 18 3 754 4292 72 12 3 chr5 22265266 22265852 -130271407 + L1_Mur1 LINE L1 4824 5414 -472 3 754 6359 113 39 4 chr5 22265852 22266804 -130270455 + Lx3A LINE L1 5981 6965 -16 3 754 270 0 0 0 chr5 22266809 22266839 -130270420 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3 754 27 49 0 0 chr5 22266856 22266897 -130270362 + AT_rich Low_complexity Low_complexity 1 41 0 3 754 34 42 0 0 chr5 22266956 22267004 -130270255 + AT_rich Low_complexity Low_complexity 1 48 0 3 754 275 304 114 29 chr5 22267245 22267560 -130269699 - L1M5 LINE L1 -2457 3689 3348 3 754 849 163 256 0 chr5 22267611 22267783 -130269476 - B3 SINE B2 0 216 1 3 754 198 0 0 0 chr5 22268015 22268037 -130269222 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 754 858 261 16 32 chr5 22268110 22268363 -130268896 + Lx9 LINE L1 7203 7451 -193 3 754 22 56 0 0 chr5 22268429 22268465 -130268794 + AT_rich Low_complexity Low_complexity 1 36 0 3 754 951 231 15 0 chr5 22268472 22268675 -130268584 - B3 SINE B2 -10 206 1 3 754 261 0 0 0 chr5 22269470 22269499 -130267760 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 3 754 180 367 0 0 chr5 22269730 22269809 -130267450 + MIR SINE MIR 86 164 -98 3 754 222 37 0 0 chr5 22270509 22270536 -130266723 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 754 468 317 0 0 chr5 22270556 22270657 -130266602 - RSINE1 SINE B4 -19 146 46 3 754 513 135 0 0 chr5 22271225 22271314 -130265945 + (TCC)n Simple_repeat Simple_repeat 2 90 0 3 754 945 239 29 5 chr5 22271673 22271883 -130265376 - B3 SINE B2 -1 215 1 3 754 353 262 153 7 chr5 22271917 22272067 -130265192 - MIR SINE MIR -14 248 77 3 754 445 294 80 16 chr5 22272072 22272259 -130265000 - MER3 DNA MER1_type -4 205 7 3 754 4554 78 0 0 chr5 22273643 22274280 -130262979 - L1_Mus4 LINE L1 0 6636 6042 3 754 3555 103 0 4 chr5 22274280 22274768 -130262491 - L1_Mm LINE L1 -84 5799 5314 3 754 4036 73 37 0 chr5 22274767 22275140 -130262119 - L1VL4 LINE L1 -1469 2090 1711 3 754 276 30 0 0 chr5 22275140 22275173 -130262086 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 3 754 4036 73 37 0 chr5 22275173 22275364 -130261895 - L1VL4 LINE L1 -1849 1710 1506 3 754 5927 140 7 4 chr5 22275362 22276298 -130260961 - L1VL4 LINE L1 -5384 918 1 3 754 26 0 0 0 chr5 22276954 22276980 -130260279 + AT_rich Low_complexity Low_complexity 1 26 0 3 754 225 307 127 83 chr5 22277091 22277656 -130259603 - L1ME5 LINE L1 -235 5959 5370 3 754 1047 254 41 19 chr5 22277948 22278217 -130259042 - ORR1E LTR MaLR -10 349 75 3 754 568 233 41 0 chr5 22278232 22278378 -130258881 - L1MA4 LINE L1 -403 5897 5746 3 754 1489 140 186 4 chr5 22278383 22278662 -130258597 - ORR1D1 LTR MaLR 0 374 45 3 754 762 269 50 47 chr5 22278662 22279064 -130258195 - L1MA4 LINE L1 -985 5158 4756 3 754 250 390 48 0 chr5 22279140 22279245 -130258014 - L3 LINE CR1 -172 4317 4208 3 754 531 0 0 0 chr5 22279449 22279508 -130257751 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 3 754 1338 231 27 107 chr5 22279643 22280093 -130257166 - Lx6 LINE L1 -17 7443 7030 3 754 2425 174 13 26 chr5 22280107 22280654 -130256605 - L1_Mur3 LINE L1 -3237 2643 2104 3 754 474 271 39 20 chr5 22280647 22280850 -130256409 - L1_Mur3 LINE L1 -7447 281 75 3 754 213 39 0 0 chr5 22280871 22280897 -130256362 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 3 754 416 338 117 47 chr5 22281011 22281225 -130256034 - B4A SINE B4 -61 231 3 3 754 255 61 0 0 chr5 22281607 22281640 -130255619 + (A)n Simple_repeat Simple_repeat 1 33 0 3 754 180 0 0 0 chr5 22281671 22281691 -130255568 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 3 754 432 0 0 0 chr5 22281847 22281895 -130255364 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 754 568 252 32 8 chr5 22281899 22282023 -130255236 - RSINE1 SINE B4 -33 132 6 3 755 375 78 0 0 chr5 22282459 22282510 -130254749 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 3 755 1581 192 142 3 chr5 22283126 22283465 -130253794 + ORR1B1 LTR MaLR 1 386 -8 4 755 1333 238 67 71 chr5 22283599 22284020 -130253239 + MTD LTR MaLR 1 419 0 4 755 357 234 0 0 chr5 22284279 22284356 -130252903 - Lx9 LINE L1 -621 7023 6947 4 755 424 262 25 0 chr5 22284358 22284501 -130252758 + Lx9 LINE L1 6906 7183 -461 4 755 234 150 0 0 chr5 22284502 22284542 -130252717 + (GGA)n Simple_repeat Simple_repeat 3 42 0 4 755 188 273 208 20 chr5 22286048 22286149 -130251110 - MIR SINE MIR -139 123 4 4 755 441 0 0 0 chr5 22286688 22286737 -130250522 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 755 271 316 73 22 chr5 22286872 22287008 -130250251 + MER58B DNA MER1_type 1 143 -198 4 755 834 40 0 39 chr5 22287094 22287278 -130249981 + L1Md_F3 LINE L1 6451 6584 0 4 755 706 261 252 2 chr5 22287962 22288489 -130248770 - Lx7 LINE L1 0 7696 7038 4 755 252 247 183 8 chr5 22290338 22290437 -130246822 + MIRm SINE MIR 59 166 -96 4 755 203 138 0 0 chr5 22291054 22291083 -130246176 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 755 286 259 0 60 chr5 22291921 22292176 -130245083 + (TTGTG)n Simple_repeat Simple_repeat 1 239 0 4 755 210 263 0 68 chr5 22292177 22292369 -130244890 + (CATTG)n Simple_repeat Simple_repeat 1 179 0 4 755 1770 128 6 104 chr5 22292929 22293286 -130243973 - RLTRETN_Mm LTR ERVK 0 322 1 4 755 258 181 59 17 chr5 22293962 22294080 -130243179 + (TATAA)n Simple_repeat Simple_repeat 1 123 0 4 755 388 303 105 128 chr5 22294249 22294861 -130242398 - L1MB7 LINE L1 -16 6168 5571 4 755 348 218 0 117 chr5 22294871 22294974 -130242285 - RLTR20D LTR ERVK 0 578 445 4 755 375 23 0 0 chr5 22294978 22295022 -130242237 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 755 382 291 66 25 chr5 22295041 22295253 -130242006 - RLTR20D LTR ERVK -227 336 143 4 755 733 264 96 3 chr5 22295253 22295573 -130241686 - L1MB7 LINE L1 -610 5564 5215 4 755 2673 132 36 2 chr5 22295968 22296385 -130240874 - Lx LINE L1 -1 6653 6223 4 755 648 142 26 9 chr5 22296385 22296499 -130240760 - URR1A DNA MER1_type -30 196 81 4 755 207 102 60 20 chr5 22298078 22298128 -130239131 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 4 755 414 0 0 0 chr5 22298663 22298709 -130238550 + (CAGAG)n Simple_repeat Simple_repeat 1 46 0 4 755 253 322 60 33 chr5 22299043 22299194 -130238065 + MER5A DNA MER1_type 35 189 0 4 755 216 0 0 0 chr5 22299222 22299246 -130238013 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 755 1237 270 104 49 chr5 22300913 22301693 -130235566 - L1ME1 LINE L1 -1 6178 5355 4 755 5062 209 105 68 chr5 22301827 22302235 -130235024 - Lx7 LINE L1 0 7696 7353 4 755 198 0 0 0 chr5 22302235 22302257 -130235002 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 4 755 5062 209 105 68 chr5 22302257 22303380 -130233879 - Lx7 LINE L1 -344 7352 6108 4 755 2994 132 57 24 chr5 22303383 22303660 -130233599 - L1_Mur3 LINE L1 -1314 4566 4273 4 755 1242 69 51 0 chr5 22303660 22303835 -130233424 - B2_Mm2 SINE B2 -9 186 3 4 755 2994 132 57 24 chr5 22303835 22304188 -130233071 - L1_Mur3 LINE L1 -1608 4272 3915 4 755 643 215 32 42 chr5 22304203 22304392 -130232867 - Lx3C LINE L1 -11 6965 6779 4 755 320 261 157 16 chr5 22305206 22305327 -130231932 + MIR SINE MIR 122 259 -3 4 755 1191 62 0 0 chr5 22305546 22305692 -130231567 + B1_Mm SINE Alu 2 147 0 4 755 381 310 73 59 chr5 22306302 22306590 -130230669 + Lx8 LINE L1 7154 7445 -28 4 755 4249 66 0 7 chr5 22306597 22307149 -130230110 + L1Md_F2 LINE L1 6016 6563 -19 4 755 2829 258 80 1 chr5 22307666 22308428 -130228831 + RCHARR1 DNA MER1_type 5 826 -148 4 755 356 88 18 0 chr5 22308440 22308497 -130228762 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 755 3385 40 0 0 chr5 22308572 22308968 -130228291 - MTA_Mm LTR MaLR 0 396 1 4 755 7680 65 13 70 chr5 22308968 22310133 -130227126 - MTA_Mm-int LTR MaLR 0 1098 1 4 755 3264 48 2 0 chr5 22310134 22310528 -130226731 - MTA_Mm LTR MaLR -1 395 1 4 755 310 302 99 5 chr5 22310895 22311058 -130226201 - HAL1-3A_ME LINE L1 -70 2788 2674 4 755 221 138 29 44 chr5 22311059 22311127 -130226132 + CT-rich Low_complexity Low_complexity 1 67 0 4 755 217 358 47 9 chr5 22311149 22311256 -130226003 - L2a LINE L2 -14 3412 3302 4 755 282 250 13 13 chr5 22311596 22311673 -130225586 + Tigger5 DNA MER2_type 2303 2379 -27 4 755 2161 122 7 35 chr5 22311683 22312051 -130225208 - ORR1A4 LTR MaLR -11 348 1 4 755 2182 259 75 33 chr5 22312748 22313503 -130223756 - RLTR40 LTR ERVK -30 787 1 4 755 812 307 78 14 chr5 22315042 22315326 -130221933 + MamRep605 Unknown Unknown 526 827 -49 4 755 240 154 0 0 chr5 22315352 22315404 -130221855 + (CAGT)n Simple_repeat Simple_repeat 4 55 0 4 755 571 292 175 44 chr5 22315565 22315719 -130221540 + L1M4 LINE L1 379 582 -6322 4 755 474 125 0 0 chr5 22315719 22315799 -130221460 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 755 571 292 175 44 chr5 22315799 22316285 -130220974 + L1M4 LINE L1 583 1103 -5801 4 755 808 339 50 25 chr5 22316446 22317260 -130219999 + L1M4 LINE L1 1145 1979 -4925 4 755 242 147 74 47 chr5 22317380 22317465 -130219794 + L1M4 LINE L1 2156 2232 -5102 4 755 415 277 76 24 chr5 22317540 22317751 -130219508 + L1M4 LINE L1 4729 4950 -1196 4 755 284 282 105 0 chr5 22318336 22318460 -130218799 + L1M4 LINE L1 5083 5219 -927 4 755 225 0 0 0 chr5 22319294 22319319 -130217940 + (A)n Simple_repeat Simple_repeat 1 25 0 4 755 751 171 13 0 chr5 22320010 22320168 -130217091 + CT-rich Low_complexity Low_complexity 2 161 0 4 755 35 63 0 0 chr5 22320730 22320793 -130216466 + AT_rich Low_complexity Low_complexity 1 63 0 4 755 469 296 7 7 chr5 22320956 22321099 -130216160 - B3A SINE B2 -1 197 55 4 755 339 25 0 0 chr5 22321208 22321248 -130216011 + (TATG)n Simple_repeat Simple_repeat 1 40 0 4 755 704 189 0 7 chr5 22321248 22321402 -130215857 + (TCTA)n Simple_repeat Simple_repeat 2 154 0 4 755 6052 58 24 3 chr5 22321561 22322425 -130214834 - MusHAL1 LINE L1 -1 2711 1830 4 755 321 294 158 30 chr5 22322737 22322902 -130214357 - MIRc SINE MIR -22 246 61 4 755 198 128 0 0 chr5 22324603 22324642 -130212617 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 755 611 252 19 56 chr5 22324941 22325101 -130212158 + B3 SINE B2 3 156 -60 4 755 688 307 100 4 chr5 22325102 22325341 -130211918 + B4A SINE B4 10 271 -21 4 755 21 0 0 0 chr5 22325565 22325586 -130211673 + AT_rich Low_complexity Low_complexity 1 21 0 4 755 7020 55 1 4 chr5 22325716 22326966 -130210293 - L1Md_F2 LINE L1 -383 6199 4954 4 755 3132 49 3 3 chr5 22326966 22327356 -130209903 + L1Md_F2 LINE L1 6183 6572 -10 4 755 335 248 104 9 chr5 22328219 22328325 -130208934 + RMER30 DNA MER1_type 10 125 -77 4 755 299 380 77 12 chr5 22328892 22329060 -130208199 - MIR SINE MIR -79 183 5 4 755 203 289 206 0 chr5 22329836 22329933 -130207326 - MIRb SINE MIR -120 148 32 4 755 576 0 0 0 chr5 22330128 22330192 -130207067 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 4 755 599 302 26 8 chr5 22330586 22330762 -130206497 - B3A SINE B2 -8 187 1 4 755 185 180 26 28 chr5 22331609 22331662 -130205597 - MIR SINE MIR -56 206 158 4 755 370 347 58 6 chr5 22331822 22331993 -130205266 - LTR80B LTR ERVL -3 581 402 4 755 22 56 0 0 chr5 22332546 22332582 -130204677 + AT_rich Low_complexity Low_complexity 1 36 0 4 755 3558 297 93 29 chr5 22332687 22333863 -130203396 - Lx8 LINE L1 -62 7411 6194 4 755 426 85 0 0 chr5 22333863 22333922 -130203337 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 755 3558 297 93 29 chr5 22333922 22334397 -130202862 - Lx8 LINE L1 -1280 6193 5655 4 755 294 29 0 0 chr5 22334397 22334432 -130202827 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 755 680 277 106 14 chr5 22334462 22334693 -130202566 - Lx8 LINE L1 -178 5702 5460 4 755 240 35 0 0 chr5 22334693 22334722 -130202537 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 755 680 277 106 14 chr5 22334722 22334783 -130202476 - Lx8 LINE L1 -421 5459 5384 4 755 745 30 10 10 chr5 22334955 22335056 -130202203 + (GAAA)n Simple_repeat Simple_repeat 1 101 0 4 755 21 0 0 0 chr5 22336205 22336226 -130201033 + AT_rich Low_complexity Low_complexity 1 21 0 4 755 412 159 83 21 chr5 22337063 22337159 -130200100 + MLT1C LTR MaLR 1 102 -365 4 755 591 212 259 29 chr5 22337201 22337371 -130199888 - B3 SINE B2 -6 210 2 4 755 234 0 0 0 chr5 22337443 22337469 -130199790 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 755 21 0 0 0 chr5 22337469 22337490 -130199769 + AT_rich Low_complexity Low_complexity 1 21 0 4 755 500 212 30 0 chr5 22337490 22337589 -130199670 + B1_Mur2 SINE Alu 24 125 -24 4 755 419 355 34 15 chr5 22337605 22337811 -130199448 + MLT1C LTR MaLR 256 465 -2 4 755 1892 41 49 4 chr5 22338522 22338767 -130198492 - L1Md_F2 LINE L1 0 6582 6327 4 755 2266 97 57 8 chr5 22338829 22339181 -130198078 - Lx3_Mus LINE L1 -11 6998 6630 4 755 6210 101 74 19 chr5 22339181 22340575 -130196684 - L1_Mur1 LINE L1 -3741 2145 676 4 755 883 237 10 80 chr5 22340599 22340911 -130196348 - L1_Mur1 LINE L1 -6667 317 28 4 755 575 141 6 219 chr5 22340977 22341141 -130196118 + MT2B LTR ERVL 2 130 -471 4 755 270 106 0 0 chr5 22341581 22341628 -130195631 + (T)n Simple_repeat Simple_repeat 1 47 0 4 755 408 312 67 24 chr5 22341855 22342019 -130195240 - MIRb SINE MIR -24 244 74 4 755 525 349 54 44 chr5 22343029 22343326 -130193933 - ORR1E LTR MaLR -54 305 6 4 755 961 139 6 6 chr5 22343852 22344026 -130193233 + GA-rich Low_complexity Low_complexity 2 175 0 4 755 690 305 53 41 chr5 22344507 22344825 -130192434 + MLT1A0 LTR MaLR 16 337 -28 4 755 211 354 8 45 chr5 22345355 22345488 -130191771 - L2a LINE L2 -50 3376 3249 4 755 301 277 17 26 chr5 22346045 22346160 -130191099 + MER20 DNA MER1_type 102 215 -4 4 755 486 283 103 60 chr5 22346624 22346857 -130190402 - ORR1E LTR MaLR -107 252 10 4 755 306 125 0 0 chr5 22347075 22347123 -130190136 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 4 755 1133 150 43 14 chr5 22347292 22347502 -130189757 + Lx4A LINE L1 6834 7049 -9 4 755 253 330 10 0 chr5 22347513 22347613 -130189646 + GA-rich Low_complexity Low_complexity 2 102 0 4 755 3710 38 52 20 chr5 22348477 22348937 -130188322 - MT2C_Mm LTR ERVL 0 475 1 4 755 2201 70 0 59 chr5 22349952 22350273 -130186986 - L1_Mus2 LINE L1 -3 6563 6262 4 755 225 226 48 0 chr5 22351194 22351256 -130186003 + Charlie4z DNA MER1_type 57 121 -46 4 755 31 68 0 0 chr5 22351737 22351796 -130185463 + AT_rich Low_complexity Low_complexity 1 59 0 4 755 372 43 0 0 chr5 22351818 22351864 -130185395 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 755 612 200 0 0 chr5 22352490 22352620 -130184639 + (TA)n Simple_repeat Simple_repeat 2 131 0 5 755 229 341 24 0 chr5 22352848 22352933 -130184326 - MIR SINE MIR -78 184 98 5 755 350 140 23 23 chr5 22353076 22353164 -130184095 + CT-rich Low_complexity Low_complexity 3 90 0 5 755 659 293 125 16 chr5 22353167 22353486 -130183773 - Charlie7 DNA MER1_type -309 2303 1950 5 755 306 353 52 37 chr5 22354039 22354230 -130183029 - MER21B LTR ERV1 -132 731 538 5 755 254 337 115 58 chr5 22354738 22354946 -130182313 - Charlie7 DNA MER1_type -1159 1453 1234 5 755 465 19 0 0 chr5 22355121 22355175 -130182084 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 755 2168 62 4 0 chr5 22355611 22355887 -130181372 + L1_Mus1 LINE L1 6291 6567 0 5 755 1289 279 122 36 chr5 22355895 22356081 -130181178 + Lx8 LINE L1 6186 6397 -1076 5 755 2682 148 2 5 chr5 22356081 22356503 -130180756 + MTC LTR MaLR 1 421 0 5 755 1289 279 122 36 chr5 22356503 22356948 -130180311 + Lx8 LINE L1 6398 6871 -602 5 755 22 35 0 0 chr5 22357017 22357046 -130180213 + AT_rich Low_complexity Low_complexity 1 29 0 5 755 544 316 29 53 chr5 22357046 22357253 -130180006 - B3A SINE B2 -12 204 3 5 755 761 194 108 147 chr5 22357340 22357673 -130179586 - RLTRETN_Mm LTR ERVK -2 320 1 5 755 434 289 153 28 chr5 22357854 22358145 -130179114 + L1M5 LINE L1 3023 3350 -2796 5 755 573 341 69 4 chr5 22358468 22358911 -130178348 - L1MA7 LINE L1 -326 5965 5484 5 755 2210 207 23 35 chr5 22360562 22361042 -130176217 - RMER19C LTR ERVK 0 611 138 5 755 438 114 0 33 chr5 22361624 22361715 -130175544 + (TG)n Simple_repeat Simple_repeat 2 89 0 5 755 210 71 0 0 chr5 22361715 22361743 -130175516 + (CG)n Simple_repeat Simple_repeat 2 29 0 5 755 451 248 86 23 chr5 22362492 22362620 -130174639 - B1_Mur2 SINE Alu -12 137 2 5 755 181 341 129 0 chr5 22362644 22362729 -130174530 + MIRb SINE MIR 154 249 -19 5 755 471 176 0 0 chr5 22363628 22363719 -130173540 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 755 24 0 0 0 chr5 22364360 22364384 -130172875 + AT_rich Low_complexity Low_complexity 1 24 0 5 755 1188 268 120 25 chr5 22364469 22364837 -130172422 + MTD LTR MaLR 3 405 -14 5 755 1045 249 68 34 chr5 22364875 22365229 -130172030 + RLTR14 LTR ERV1 17 382 0 5 755 342 0 0 0 chr5 22367117 22367155 -130170104 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 755 660 278 11 0 chr5 22367291 22367471 -130169788 + B3A SINE B2 1 182 -16 5 755 298 299 30 30 chr5 22367579 22367710 -130169549 + Lx9 LINE L1 7229 7359 -285 5 755 507 95 0 0 chr5 22367775 22367849 -130169410 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 755 222 60 36 107 chr5 22367927 22367983 -130169276 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 5 755 487 171 19 0 chr5 22368170 22368275 -130168984 + CT-rich Low_complexity Low_complexity 3 109 0 5 755 426 85 0 0 chr5 22368271 22368330 -130168929 + (TTTC)n Simple_repeat Simple_repeat 1 59 0 5 755 353 317 60 33 chr5 22368330 22368480 -130168779 - HAL1-3A_ME LINE L1 -419 2439 2286 5 755 626 26 0 0 chr5 22368667 22368743 -130168516 - L1Md_A LINE L1 -214 6368 6293 5 755 899 58 21 21 chr5 22368743 22368884 -130168375 + L1Md_F3 LINE L1 6444 6584 0 5 755 666 281 134 63 chr5 22369188 22369598 -130167661 - MER67D LTR ERV1 0 514 76 5 755 624 186 256 6 chr5 22369604 22369772 -130167487 + B3 SINE B2 2 211 -5 5 755 304 328 35 9 chr5 22370237 22370351 -130166908 + MIR SINE MIR 36 152 -110 5 755 24 67 0 0 chr5 22370922 22370967 -130166292 + AT_rich Low_complexity Low_complexity 1 45 0 5 755 22 0 0 0 chr5 22371009 22371031 -130166228 + AT_rich Low_complexity Low_complexity 1 22 0 5 755 209 218 36 0 chr5 22371255 22371310 -130165949 + CT-rich Low_complexity Low_complexity 3 59 0 5 755 270 0 0 0 chr5 22372108 22372138 -130165121 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 755 261 0 0 0 chr5 22372207 22372236 -130165023 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 755 330 342 105 84 chr5 22372308 22372726 -130164533 + LTR33A_ LTR ERVL 86 512 -19 5 755 1433 262 52 7 chr5 22374297 22374701 -130162558 + Lx6 LINE L1 6978 7399 -61 5 755 255 271 20 50 chr5 22374823 22374924 -130162335 + MIRc SINE MIR 171 268 0 5 755 240 35 0 0 chr5 22375239 22375268 -130161991 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 755 578 85 11 0 chr5 22375371 22375465 -130161794 + (TC)n Simple_repeat Simple_repeat 1 95 0 5 755 519 329 46 14 chr5 22375500 22375781 -130161478 - B4A SINE B4 -2 290 1 5 755 540 0 0 0 chr5 22376870 22376930 -130160329 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 755 200 311 131 9 chr5 22378636 22378743 -130158516 - MIRb SINE MIR -19 249 130 5 755 7705 51 1 1 chr5 22378788 22379829 -130157430 + L1_Mus2 LINE L1 5525 6565 -1 5 755 236 218 0 35 chr5 22379872 22379929 -130157330 + MIR SINE MIR 80 134 -128 5 755 522 321 14 14 chr5 22380838 22381050 -130156209 + B3 SINE B2 5 216 0 5 755 220 242 113 0 chr5 22381081 22381143 -130156116 + ID4_ SINE ID 15 83 0 5 755 314 319 141 16 chr5 22381723 22381914 -130155345 + MIR SINE MIR 22 236 -26 5 755 489 17 0 0 chr5 22382457 22382515 -130154744 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 755 3141 272 132 0 chr5 22382834 22384026 -130153233 - RMER1C Other Other -4 1338 140 5 755 307 190 0 0 chr5 22384638 22384696 -130152563 - MERVL_2A-int LTR ERVL -390 5371 5314 5 755 1821 43 0 8 chr5 22384816 22385050 -130152209 - L1Md_F2 LINE L1 -8 6574 6343 5 755 738 23 0 0 chr5 22385050 22385138 -130152121 - L1Md_F2 LINE L1 -350 6232 6145 5 755 1115 79 0 0 chr5 22385160 22385299 -130151960 + B1_Mus1 SINE Alu 1 139 -9 5 755 192 77 0 0 chr5 22385315 22385341 -130151918 + (A)n Simple_repeat Simple_repeat 1 26 0 5 755 829 231 10 2 chr5 22385850 22386015 -130151244 + B3 SINE B2 2 187 -11 5 755 441 0 0 0 chr5 22386015 22386064 -130151195 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 755 260 277 60 60 chr5 22386140 22386240 -130151019 - MER103 DNA DNA -47 119 20 5 755 350 339 39 0 chr5 22387009 22387136 -130150123 + RMER30 DNA MER1_type 7 138 -64 5 755 564 214 100 33 chr5 22387769 22387863 -130149396 - RLTR20A2 LTR ERVK 0 551 461 5 755 708 12 0 0 chr5 22387863 22387944 -130149315 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 755 564 214 100 33 chr5 22387944 22387991 -130149268 - RLTR20A2 LTR ERVK -91 460 403 5 755 387 0 0 0 chr5 22387991 22388034 -130149225 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 755 474 233 124 35 chr5 22388034 22388060 -130149199 - RLTR20A2 LTR ERVK -147 387 352 5 755 10745 87 21 34 chr5 22388060 22390760 -130146499 - Lx3A LINE L1 -40 6941 4298 5 755 1967 198 41 21 chr5 22390762 22391180 -130146079 - RLTR20A2 LTR ERVK -152 426 1 5 755 21 36 0 0 chr5 22391202 22391230 -130146029 + AT_rich Low_complexity Low_complexity 1 28 0 5 755 752 351 65 43 chr5 22393636 22394008 -130143251 + LTR16A1 LTR ERVL 77 456 0 5 755 25 0 0 0 chr5 22395124 22395149 -130142110 + AT_rich Low_complexity Low_complexity 1 25 0 5 755 295 236 12 34 chr5 22397278 22397380 -130139879 + L1M3 LINE L1 3712 3810 -2330 5 755 294 257 88 0 chr5 22398264 22398377 -130138882 + (CATG)n Simple_repeat Simple_repeat 1 123 0 5 755 367 303 33 98 chr5 22398399 22398644 -130138615 + RMER12 LTR ERVK 770 998 -324 5 755 360 0 0 0 chr5 22399898 22399938 -130137321 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 755 7180 192 24 12 chr5 22400030 22401473 -130135786 - Lx5 LINE L1 -5 7045 5587 5 755 197 132 0 26 chr5 22401623 22401662 -130135597 + CT-rich Low_complexity Low_complexity 2 39 0 5 755 315 276 26 0 chr5 22402174 22402290 -130134969 + Charlie5 DNA MER1_type 2370 2488 -136 5 755 247 49 49 0 chr5 22402694 22402735 -130134524 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 755 267 346 55 12 chr5 22404514 22404643 -130132616 + MIR SINE MIR 11 145 -63 5 755 24 0 0 0 chr5 22405212 22405236 -130132023 + AT_rich Low_complexity Low_complexity 1 24 0 5 755 186 174 0 0 chr5 22405569 22405615 -130131644 + GA-rich Low_complexity Low_complexity 2 47 0 5 755 210 318 16 0 chr5 22406112 22406175 -130131084 + L2b LINE L2 3311 3374 -1 5 755 549 0 0 0 chr5 22406845 22406906 -130130353 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 755 180 0 0 0 chr5 22407544 22407564 -130129695 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 755 324 0 0 0 chr5 22407623 22407659 -130129600 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 755 275 326 7 69 chr5 22407935 22408080 -130129179 - L3b LINE CR1 -320 162 27 5 755 256 338 25 68 chr5 22409917 22410079 -130127180 - MIRc SINE MIR -37 231 74 5 755 346 332 60 37 chr5 22410732 22410948 -130126311 + L1MDa LINE L1 222 442 -6191 5 755 232 262 82 12 chr5 22410983 22411068 -130126191 + L1MDa LINE L1 677 767 -5866 5 755 509 236 112 11 chr5 22411183 22411371 -130125888 + L1MD1 LINE L1 6019 6225 -17 5 755 540 270 108 0 chr5 22411661 22411809 -130125450 - MER5B DNA MER1_type -14 164 1 5 755 204 303 13 13 chr5 22412041 22412118 -130125141 + CT-rich Low_complexity Low_complexity 2 78 0 5 755 871 180 35 11 chr5 22412455 22412629 -130124630 + ORR1A4 LTR MaLR 1 178 -151 5 755 233 358 0 0 chr5 22412709 22412776 -130124483 - MER5A DNA MER1_type -1 188 122 5 756 795 271 29 5 chr5 22413569 22413773 -130123486 - ID_B1 SINE B4 -14 210 2 5 756 333 120 24 12 chr5 22414278 22414362 -130122897 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 756 270 228 0 0 chr5 22414397 22414498 -130122761 + (CA)n Simple_repeat Simple_repeat 1 101 0 5 756 322 148 0 0 chr5 22414502 22414556 -130122703 + HAL1-3A_ME LINE L1 1976 2029 -829 5 756 1035 226 10 0 chr5 22414889 22415097 -130122162 - B3 SINE B2 -6 210 1 5 756 303 311 132 30 chr5 22415847 22416013 -130121246 + Charlie2a DNA MER1_type 1464 1646 -1215 5 756 711 54 0 0 chr5 22416125 22416217 -130121042 + (TC)n Simple_repeat Simple_repeat 2 93 0 6 756 435 19 0 0 chr5 22416224 22416276 -130120983 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 756 517 349 35 21 chr5 22416310 22416597 -130120662 - B4 SINE B4 0 292 2 6 756 3285 296 77 28 chr5 22416846 22418161 -130119098 - Lx8 LINE L1 -2 7471 6093 6 756 577 305 0 8 chr5 22418252 22418381 -130118878 - RSINE1 SINE B4 -30 135 8 6 756 366 302 182 16 chr5 22418429 22418742 -130118517 + Charlie2a DNA MER1_type 1994 2358 -503 5 756 369 314 178 14 chr5 22419025 22419300 -130117959 + Charlie2a DNA MER1_type 2490 2809 -52 5 756 285 286 198 36 chr5 22419817 22419984 -130117275 - Lx9 LINE L1 -193 7451 7258 6 756 447 19 0 0 chr5 22419998 22420050 -130117209 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 756 234 0 0 0 chr5 22420050 22420075 -130117184 + (GA)n Simple_repeat Simple_repeat 1 26 0 6 756 35 24 0 0 chr5 22420146 22420188 -130117071 + AT_rich Low_complexity Low_complexity 1 42 0 6 756 300 137 20 0 chr5 22420448 22420499 -130116760 + HAL1-3A_ME LINE L1 1979 2030 -828 6 756 623 183 6 0 chr5 22420570 22420745 -130116514 + (CA)n Simple_repeat Simple_repeat 2 177 0 6 756 872 218 93 5 chr5 22421903 22422097 -130115162 - B3 SINE B2 -4 212 2 6 756 309 280 92 51 chr5 22423079 22423177 -130114082 + B1F2 SINE Alu 38 139 -10 6 756 225 150 0 0 chr5 22424499 22424539 -130112720 + Tigger15a DNA TcMar 519 558 -157 6 756 1452 241 31 24 chr5 22424760 22425177 -130112082 - Lx9 LINE L1 -128 7516 7097 6 756 3319 69 58 4 chr5 22425953 22425966 -130111293 + L1_Mus1 LINE L1 5681 5693 -874 6 756 3085 40 0 0 chr5 22425966 22426337 -130110922 - L1_Mus1 LINE L1 0 6567 6197 6 756 3319 69 58 4 chr5 22426337 22426580 -130110679 + L1_Mus1 LINE L1 5694 5946 -621 6 756 810 0 0 0 chr5 22426580 22426670 -130110589 + (GAA)n Simple_repeat Simple_repeat 1 90 0 6 756 3319 69 58 4 chr5 22426670 22426893 -130110366 + L1_Mus1 LINE L1 5947 6185 -382 6 756 495 0 0 0 chr5 22427529 22427584 -130109675 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 756 227 302 111 56 chr5 22429235 22429361 -130107898 - MamGypLTR1c LTR Gypsy -511 292 160 6 756 264 353 143 11 chr5 22430546 22430721 -130106538 + L2 LINE L2 2647 2844 -575 6 756 1235 330 51 3 chr5 22431551 22431904 -130105355 + MTE2b LTR MaLR 2 371 -8 6 756 651 337 58 0 chr5 22432664 22432869 -130104390 + B4A SINE B4 55 271 -21 6 756 1292 282 104 24 chr5 22433309 22433898 -130103361 + Lx8 LINE L1 6808 7443 -30 6 756 3558 151 10 23 chr5 22435839 22436442 -130100817 - RLTR17 LTR ERVK 0 692 98 6 756 180 0 0 0 chr5 22436911 22436931 -130100328 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 756 207 0 0 0 chr5 22436931 22436953 -130100306 + (TC)n Simple_repeat Simple_repeat 1 23 0 6 756 676 259 6 12 chr5 22436959 22437131 -130100128 - Lx7 LINE L1 -388 7308 7138 6 756 337 277 10 21 chr5 22437900 22437996 -130099263 - Lx7 LINE L1 -552 7144 7050 6 756 539 317 71 55 chr5 22438150 22438644 -130098615 + MLT1D LTR MaLR 4 505 0 6 756 260 242 270 10 chr5 22439387 22439487 -130097772 + MER20 DNA MER1_type 90 215 -4 6 756 201 152 61 0 chr5 22439650 22439703 -130097556 - MIRc SINE MIR -104 158 104 6 756 2111 157 132 5 chr5 22439958 22440367 -130096892 + RMER4A LTR ERVK 6 466 0 6 756 216 309 0 0 chr5 22440404 22440459 -130096800 + (CATG)n Simple_repeat Simple_repeat 2 56 0 6 756 196 361 93 0 chr5 22440568 22440665 -130096594 + L2c LINE L2 3249 3354 -33 6 756 2086 184 5 37 chr5 22444549 22444956 -130092303 + MTB_Mm LTR MaLR 1 394 -13 6 756 1255 265 103 13 chr5 22445333 22445869 -130091390 - Lx9 LINE L1 -8 7636 7053 6 756 486 0 0 0 chr5 22445905 22445959 -130091300 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 756 1247 151 72 18 chr5 22446470 22446746 -130090513 - L1_Rod LINE L1 -269 5578 5288 6 756 271 313 39 77 chr5 22446754 22446898 -130090361 + MTE2b LTR MaLR 226 367 -12 6 756 499 259 39 58 chr5 22446906 22447062 -130090197 - MLT2B4 LTR ERVL -403 153 1 6 756 366 123 0 0 chr5 22447847 22447904 -130089355 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 756 21 71 0 0 chr5 22447993 22448035 -130089224 + AT_rich Low_complexity Low_complexity 1 42 0 6 756 1203 235 33 72 chr5 22448734 22449069 -130088190 - Lx5 LINE L1 -5 7045 6724 6 756 206 219 43 72 chr5 22449113 22449182 -130088077 + MIR SINE MIR 63 129 -133 6 756 255 270 92 47 chr5 22449764 22449920 -130087339 + MIR SINE MIR 47 197 -65 6 756 306 0 0 0 chr5 22450988 22451022 -130086237 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 6 756 5459 165 21 28 chr5 22451022 22452138 -130085121 - Lx4B LINE L1 -21 7037 5930 6 756 255 226 0 16 chr5 22452342 22452405 -130084854 + MLT1A0 LTR MaLR 1 62 -303 6 756 212 247 27 0 chr5 22452468 22452541 -130084718 + GA-rich Low_complexity Low_complexity 4 78 0 6 756 927 323 145 25 chr5 22452541 22452988 -130084271 - MLT2B3 LTR ERVL -47 507 7 6 756 627 335 122 4 chr5 22452991 22453228 -130084031 + MLT1A0 LTR MaLR 89 353 -12 6 756 24 0 0 0 chr5 22453248 22453272 -130083987 + AT_rich Low_complexity Low_complexity 1 24 0 6 756 2263 164 5 17 chr5 22453326 22453736 -130083523 + MTB_Mm LTR MaLR 3 407 0 6 756 199 313 165 14 chr5 22453782 22453929 -130083330 - MIR SINE MIR -24 238 77 6 756 450 94 0 0 chr5 22456679 22456743 -130080516 + (TCC)n Simple_repeat Simple_repeat 1 64 0 6 756 251 159 29 0 chr5 22456754 22456823 -130080436 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 6 756 570 79 0 0 chr5 22456832 22456921 -130080338 + (TG)n Simple_repeat Simple_repeat 2 90 0 6 756 569 216 30 67 chr5 22456924 22457058 -130080201 - B1_Mur1 SINE Alu -16 133 5 6 756 235 220 17 0 chr5 22457352 22457411 -130079848 + L1MB8 LINE L1 6107 6166 -12 6 756 212 327 62 26 chr5 22458069 22458182 -130079077 + L2c LINE L2 3249 3365 -22 6 756 416 357 47 35 chr5 22458596 22458828 -130078431 - MIRb SINE MIR -32 236 2 6 756 1090 182 53 15 chr5 22459313 22459519 -130077740 + B3 SINE B2 1 214 -2 6 756 21 57 0 0 chr5 22460905 22460940 -130076319 + AT_rich Low_complexity Low_complexity 1 35 0 6 756 480 214 38 0 chr5 22461295 22461426 -130075833 + Lx6 LINE L1 7301 7436 -24 6 756 412 72 0 68 chr5 22461571 22461645 -130075614 - MusHAL1 LINE L1 -2801 553 485 6 756 7493 86 2 5 chr5 22461644 22462846 -130074413 + L1_Mus4 LINE L1 5439 6636 0 6 756 234 336 103 8 chr5 22462889 22463006 -130074253 - ORR1E LTR MaLR -210 149 22 6 756 201 108 0 0 chr5 22463423 22463460 -130073799 + (A)n Simple_repeat Simple_repeat 1 37 0 6 756 454 296 35 29 chr5 22464732 22464906 -130072353 - B3 SINE B2 0 216 42 6 756 280 304 11 21 chr5 22465460 22465554 -130071705 + PB1D10 SINE Alu 17 109 -8 6 756 297 0 0 0 chr5 22466222 22466255 -130071004 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 6 756 264 265 59 0 chr5 22466255 22466323 -130070936 - B1_Mur2 SINE Alu -13 136 65 6 756 692 265 64 17 chr5 22467119 22467292 -130069967 + B3A SINE B2 2 182 -16 6 756 612 289 6 44 chr5 22467340 22467521 -130069738 + B4A SINE B4 2 175 -117 6 756 240 279 58 115 chr5 22467387 22467426 -130069833 + B3 SINE B2 46 136 -80 6 756 259 253 9 142 chr5 22467426 22467532 -130069727 + B1F2 SINE Alu 1 92 -57 6 756 240 279 58 115 chr5 22467532 22467561 -130069698 + B3 SINE B2 137 209 -7 6 756 180 152 0 0 chr5 22468423 22468456 -130068803 + GA-rich Low_complexity Low_complexity 2 34 0 6 756 416 291 17 0 chr5 22468485 22468602 -130068657 + B1_Mur2 SINE Alu 11 129 -20 6 756 377 39 0 19 chr5 22469995 22470047 -130067212 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 756 203 154 0 25 chr5 22470047 22470082 -130067177 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 6 756 3329 249 80 30 chr5 22470262 22470365 -130066894 - Lx8 LINE L1 -7 7466 7327 6 756 489 17 0 0 chr5 22470365 22470423 -130066836 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 6 756 3329 249 80 30 chr5 22470423 22471401 -130065858 - Lx8 LINE L1 -147 7326 6332 6 756 283 293 73 104 chr5 22472828 22473037 -130064222 + MER34A LTR ERV1 27 247 -324 6 756 513 0 0 0 chr5 22474152 22474209 -130063050 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 756 7734 47 0 5 chr5 22474209 22475308 -130061951 - L1Md_F2 LINE L1 -14 6568 5475 6 756 237 241 0 18 chr5 22475583 22475638 -130061621 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 756 1136 169 9 33 chr5 22475765 22475979 -130061280 + B3 SINE B2 1 209 -7 6 756 927 286 185 29 chr5 22478037 22478941 -130058318 - L1ME2z LINE L1 -82 6362 5318 6 756 723 230 201 27 chr5 22479146 22479409 -130057850 + ORR1D1 LTR MaLR 1 309 -65 6 756 529 291 150 54 chr5 22479455 22479768 -130057491 - L1ME2z LINE L1 -875 5271 4929 6 756 238 318 39 96 chr5 22479782 22479880 -130057379 - L1ME2z LINE L1 -1282 4864 4794 6 756 1001 209 14 41 chr5 22479880 22480099 -130057160 - B3 SINE B2 -2 214 2 6 756 238 318 39 96 chr5 22480099 22480459 -130056800 - L1ME2z LINE L1 -1353 4793 4432 6 756 696 276 65 16 chr5 22480483 22480730 -130056529 - Lx8 LINE L1 -153 7320 7062 6 756 234 0 0 0 chr5 22480892 22480918 -130056341 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 756 1143 205 177 12 chr5 22482411 22482756 -130054503 - RMER1B Other Other -626 440 39 6 756 1026 175 192 9 chr5 22482764 22482977 -130054282 - RLTR11A2 LTR ERVK -274 253 2 6 756 400 204 70 53 chr5 22482986 22483100 -130054159 - RMER15-int LTR ERVL -3713 1286 1171 6 756 204 375 0 0 chr5 22483128 22483200 -130054059 - L2b LINE L2 -7 3368 3297 6 756 508 173 2 43 chr5 22483965 22484091 -130053168 - MTC LTR MaLR 0 421 304 6 756 1255 176 154 4 chr5 22484672 22484951 -130052308 - RLTR15 LTR ERVK 0 359 39 6 756 3053 241 89 96 chr5 22484951 22486787 -130050472 - MYSERV16_I-int LTR ERVK -519 1807 5 6 756 521 266 7 52 chr5 22487000 22487135 -130050124 - B1_Mur3 SINE Alu -6 143 15 6 756 753 144 157 119 chr5 22487479 22487747 -130049512 - MYSERV6-int LTR ERVK -2253 6706 6429 6 756 1101 255 90 9 chr5 22487828 22488172 -130049087 - ORR1D1 LTR MaLR 0 374 3 7 756 405 0 0 0 chr5 22489048 22489093 -130048166 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 7 756 374 257 0 0 chr5 22489253 22489327 -130047932 + ID4 SINE ID 8 81 -2 7 756 369 306 8 51 chr5 22489327 22489370 -130047889 + ID_B1 SINE B4 8 119 -105 7 756 187 261 13 92 chr5 22489370 22489446 -130047813 + MIRc SINE MIR 73 142 -126 7 756 385 307 65 27 chr5 22489576 22489760 -130047499 - LTR82B Low_complexity ERVL -495 335 145 7 756 752 272 35 0 chr5 22489876 22490078 -130047181 + B3 SINE B2 1 209 -7 7 756 360 111 0 0 chr5 22491434 22491488 -130045771 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 7 756 28 61 0 0 chr5 22491739 22491788 -130045471 + AT_rich Low_complexity Low_complexity 1 49 0 7 756 1597 206 66 15 chr5 22493109 22493444 -130043815 + ORR1B1 LTR MaLR 41 392 -2 7 756 262 365 70 12 chr5 22493684 22493856 -130043403 + MIRb SINE MIR 25 206 -62 7 756 941 122 7 7 chr5 22493958 22494098 -130043161 + B1_Mur4 SINE Alu 3 142 -8 7 756 581 0 14 0 chr5 22495001 22495070 -130042189 + (TTGG)n Simple_repeat Simple_repeat 2 71 0 7 756 396 250 172 0 chr5 22495070 22495176 -130042083 - B1_Mur4 SINE Alu -9 141 16 7 756 464 191 125 147 chr5 22495160 22495404 -130041855 - MER67D LTR ERV1 -435 276 13 7 756 226 301 9 55 chr5 22495577 22495686 -130041573 + L2a LINE L2 3316 3419 -7 7 756 269 336 19 9 chr5 22495757 22495862 -130041397 + ID_B1 SINE B4 70 175 -49 7 756 338 321 118 48 chr5 22496153 22496382 -130040877 - B4A SINE B4 -44 248 4 7 756 303 235 136 34 chr5 22496738 22496826 -130040433 + B1F SINE Alu 1 97 -52 7 756 34 42 0 0 chr5 22497017 22497065 -130040194 + AT_rich Low_complexity Low_complexity 1 48 0 7 756 463 252 7 20 chr5 22497065 22497079 -130040180 + L1ME2z LINE L1 5736 5748 -696 7 756 2500 70 3 14 chr5 22497079 22497426 -130039833 - L1Md_F2 LINE L1 -12 6570 6228 7 756 4108 53 0 0 chr5 22497426 22497953 -130039306 + L1Md_F2 LINE L1 5717 6243 -339 7 756 400 301 9 46 chr5 22497953 22498061 -130039198 + PB1D10 SINE Alu 13 116 -1 7 756 1894 170 37 45 chr5 22498533 22498914 -130038345 - ORR1C1 LTR MaLR 0 378 1 7 756 292 336 98 30 chr5 22499001 22499133 -130038126 - MIRc SINE MIR -84 184 44 7 756 434 355 108 39 chr5 22501070 22501404 -130035855 + ORR1E LTR MaLR 3 359 0 1 756 6942 36 0 0 chr5 22501668 22502476 -130034783 - L1Md_T LINE L1 0 6582 5775 2 756 2191 182 43 49 chr5 22502518 22502985 -130034274 - RMER1B Other Other -110 956 493 3 756 243 159 110 55 chr5 22503006 22503079 -130034180 - L1M LINE L1 -821 5341 5265 4 756 2045 138 37 11 chr5 22503459 22503834 -130033425 - ORR1B1 LTR MaLR -8 386 2 5 756 6108 57 1 3 chr5 22504059 22504812 -130032447 - L1Md_F2 LINE L1 -8 6574 5823 6 756 411 21 0 0 chr5 22506249 22506297 -130030962 + (TTC)n Simple_repeat Simple_repeat 1 48 0 7 756 1620 70 0 3 chr5 22506300 22506658 -130030601 + (TTCTCC)n Simple_repeat Simple_repeat 1 356 0 8 756 1039 37 0 0 chr5 22506660 22506795 -130030464 - B1_Mus2 SINE Alu 0 147 13 9 756 235 284 123 29 chr5 22507203 22507341 -130029918 - L1MA8 LINE L1 -1 6290 6140 1 756 1440 168 269 3 chr5 22507334 22507657 -130029602 - Lx2B LINE L1 -193 6807 6399 1 756 549 0 0 0 chr5 22508020 22508081 -130029178 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 756 429 20 0 0 chr5 22508081 22508130 -130029129 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 756 294 281 108 25 chr5 22509964 22510121 -130027138 - MLT2B5 LTR ERVL -72 483 314 1 756 339 311 63 46 chr5 22510477 22510652 -130026607 - LTR41 LTR ERVL -167 601 424 1 756 456 19 0 0 chr5 22510715 22510768 -130026491 + (CATA)n Simple_repeat Simple_repeat 3 55 0 1 756 2204 109 12 56 chr5 22512448 22512788 -130024471 - ORR1A2 LTR MaLR 0 327 3 1 756 9118 153 105 23 chr5 22512971 22513849 -130023410 - L1_Mur3 LINE L1 -285 5595 4622 1 756 207 0 0 0 chr5 22513849 22513872 -130023387 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 756 9118 153 105 23 chr5 22513872 22514194 -130023065 - L1_Mur3 LINE L1 -1259 4621 4293 1 756 341 22 0 21 chr5 22514194 22514241 -130023018 + (TTG)n Simple_repeat Simple_repeat 2 47 0 2 756 9118 153 105 23 chr5 22514241 22514854 -130022405 - L1_Mur3 LINE L1 -1588 4292 3633 1 756 3312 151 26 8 chr5 22514847 22515468 -130021791 - L1_Mur3 LINE L1 -3999 1881 1250 1 756 423 0 0 0 chr5 22516337 22516384 -130020875 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 756 4290 61 23 5 chr5 22516735 22517293 -130019966 - L1_Mus2 LINE L1 0 6566 5999 2 756 8410 87 12 0 chr5 22517293 22518426 -130018833 - L1_Mm LINE L1 -38 5845 4699 2 756 2941 192 43 21 chr5 22518417 22519082 -130018177 - L1Md_F LINE L1 -5399 1120 105 2 756 226 230 230 0 chr5 22519077 22519151 -130018108 - L1VL1 LINE L1 -6323 99 9 2 756 617 194 16 31 chr5 22519152 22519280 -130017979 - RLTR28 LTR ERVL -394 130 5 2 756 278 246 116 25 chr5 22520382 22520503 -130016756 + MER5B DNA MER1_type 5 136 -42 2 756 723 260 49 112 chr5 22521355 22521641 -130015618 - B4 SINE B4 -23 269 2 2 756 195 42 0 0 chr5 22521959 22521983 -130015276 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 756 314 323 10 0 chr5 22522399 22522498 -130014761 + PB1D10 SINE Alu 13 112 -5 3 756 231 36 0 0 chr5 22522700 22522728 -130014531 + (A)n Simple_repeat Simple_repeat 1 28 0 3 756 1148 81 43 11 chr5 22522761 22522948 -130014311 + L1_Mus4 LINE L1 6438 6630 -6 3 756 248 275 143 0 chr5 22523048 22523139 -130014120 + L1MA5 LINE L1 6174 6277 -23 3 756 280 229 124 140 chr5 22523263 22523441 -130013818 + B4A SINE B4 1 175 -117 3 756 261 317 10 60 chr5 22523708 22523825 -130013434 + PB1D10 SINE Alu 1 112 -5 3 756 25 0 0 0 chr5 22523967 22523992 -130013267 + AT_rich Low_complexity Low_complexity 1 25 0 3 756 262 235 33 56 chr5 22524348 22524438 -130012821 - RSINE1 SINE B4 0 165 78 3 756 371 316 126 42 chr5 22525147 22525481 -130011778 - L1MC LINE L1 -2206 5676 5315 3 756 1324 249 58 11 chr5 22525909 22526271 -130010988 + MTEa LTR MaLR 1 379 0 3 756 469 202 67 8 chr5 22526294 22526433 -130010826 - MTD LTR MaLR -15 404 267 4 756 413 296 16 108 chr5 22526469 22526658 -130010601 - MTD LTR MaLR -121 279 117 4 756 1148 75 7 0 chr5 22526681 22526827 -130010432 - B1_Mm SINE Alu 0 147 1 4 756 400 215 0 12 chr5 22527544 22527624 -130009635 + B1_Mur4 SINE Alu 7 85 -65 4 756 979 101 0 43 chr5 22527626 22527812 -130009447 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 4 756 833 140 12 64 chr5 22527819 22528143 -130009116 + GA-rich Low_complexity Low_complexity 1 307 0 4 756 231 36 0 0 chr5 22528510 22528538 -130008721 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 756 1924 38 0 24 chr5 22528986 22529232 -130008027 - L1Md_F3 LINE L1 0 6584 6345 4 756 2056 54 7 0 chr5 22530541 22530821 -130006438 + ORR1A2 LTR MaLR 1 282 -45 4 756 36324 48 0 3 chr5 22530822 22536439 -130000820 + L1Md_T LINE L1 1 5589 -297 4 756 8643 31 0 0 chr5 22536439 22537435 -129999824 + L1Md_T LINE L1 5590 6585 0 4 756 467 18 0 0 chr5 22537444 22537501 -129999758 + ORR1A3 LTR MaLR 270 326 0 4 756 25 51 0 0 chr5 22537787 22537826 -129999433 + AT_rich Low_complexity Low_complexity 1 39 0 5 756 1674 37 0 0 chr5 22538460 22538651 -129998608 + B2_Mm1a SINE B2 2 192 -1 5 756 21 0 0 0 chr5 22538946 22538967 -129998292 + AT_rich Low_complexity Low_complexity 1 21 0 5 756 284 317 61 6 chr5 22540045 22540210 -129997049 + MIRb SINE MIR 72 245 -23 5 756 252 337 184 32 chr5 22540556 22540746 -129996513 + B4 SINE B4 11 229 -63 5 756 326 198 0 21 chr5 22540785 22540878 -129996381 + CT-rich Low_complexity Low_complexity 1 91 0 5 756 434 196 0 9 chr5 22540887 22541000 -129996259 + (CA)n Simple_repeat Simple_repeat 1 112 0 5 756 320 232 2 25 chr5 22541034 22541121 -129996138 + B1F SINE Alu 27 113 -7 5 756 1915 173 48 8 chr5 22542027 22542383 -129994876 + ORR1D1 LTR MaLR 5 374 0 5 756 252 309 24 0 chr5 22542437 22542521 -129994738 + MIRc SINE MIR 85 170 -98 5 756 272 140 56 9 chr5 22542592 22542700 -129994559 + (TA)n Simple_repeat Simple_repeat 2 114 0 6 756 306 0 0 0 chr5 22542910 22542944 -129994315 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 757 376 239 154 0 chr5 22544917 22545047 -129992212 + L1MA6 LINE L1 5517 5666 -625 6 757 353 200 0 0 chr5 22545089 22545159 -129992100 - B4A SINE B4 -222 70 1 6 757 383 282 55 25 chr5 22545305 22545505 -129991754 + L1MA6 LINE L1 5700 5905 -395 6 757 236 352 119 9 chr5 22545551 22545660 -129991599 + ORR1D2 LTR MaLR 85 205 -165 6 757 219 246 18 0 chr5 22545823 22545880 -129991379 - PB1D7 SINE Alu -61 59 2 6 757 198 91 0 0 chr5 22546298 22546331 -129990928 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 6 757 624 232 0 0 chr5 22546567 22546744 -129990515 + (CA)n Simple_repeat Simple_repeat 1 177 0 6 757 230 233 11 53 chr5 22546744 22546839 -129990420 + CT-rich Low_complexity Low_complexity 1 91 0 6 757 777 41 0 0 chr5 22546907 22547004 -129990255 + (TC)n Simple_repeat Simple_repeat 1 97 0 6 757 214 313 60 0 chr5 22547649 22547732 -129989527 - MER5A DNA MER1_type -48 141 54 7 757 371 335 12 24 chr5 22550986 22551154 -129986105 - MIR SINE MIR -71 191 26 7 757 603 0 0 0 chr5 22551504 22551571 -129985688 + (TC)n Simple_repeat Simple_repeat 1 67 0 7 757 23 68 0 0 chr5 22552379 22552423 -129984836 + AT_rich Low_complexity Low_complexity 1 44 0 7 757 303 294 102 8 chr5 22553117 22553244 -129984015 - MER58A DNA MER1_type -83 141 3 7 757 870 10 0 0 chr5 22553471 22553570 -129983689 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 757 723 239 45 71 chr5 22553727 22553951 -129983308 - ORR1E LTR MaLR -21 338 121 7 757 1564 226 205 31 chr5 22553951 22554434 -129982825 - RMER2 LTR ERV1 0 567 1 7 757 723 239 45 71 chr5 22554434 22554475 -129982784 - ORR1E LTR MaLR -239 120 80 7 757 222 37 0 0 chr5 22555700 22555727 -129981532 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 757 203 107 38 51 chr5 22555960 22556039 -129981220 + (TA)n Simple_repeat Simple_repeat 2 79 0 7 757 261 0 0 0 chr5 22556131 22556160 -129981099 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 8 757 4697 54 0 5 chr5 22556212 22556787 -129980472 - L1_Mus1 LINE L1 0 6567 5996 8 757 208 330 88 0 chr5 22557309 22557400 -129979859 - MIRc SINE MIR -135 133 35 8 757 862 196 0 0 chr5 22559528 22559666 -129977593 - B1_Mur4 SINE Alu -7 143 6 8 757 442 303 4 76 chr5 22559666 22559702 -129977557 - ID_B1 SINE B4 -1 203 58 8 757 273 29 0 0 chr5 22559789 22559823 -129977436 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 757 189 74 0 0 chr5 22559823 22559850 -129977409 + (GA)n Simple_repeat Simple_repeat 1 27 0 8 757 1576 287 175 31 chr5 22559850 22560650 -129976609 + Lx8 LINE L1 6203 7117 -356 8 757 1636 168 121 12 chr5 22560654 22560986 -129976273 - ORR1D1 LTR MaLR -2 372 5 8 757 6023 206 47 29 chr5 22560990 22562320 -129974939 - ORR1D1-int LTR MaLR 0 1370 15 8 757 1234 190 182 9 chr5 22562320 22562639 -129974620 - ORR1D1 LTR MaLR 0 374 1 8 757 180 0 0 0 chr5 22562649 22562669 -129974590 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 8 757 668 54 0 21 chr5 22562747 22562841 -129974418 + (GGAGA)n Simple_repeat Simple_repeat 5 96 0 9 757 517 158 205 0 chr5 22562967 22563094 -129974165 + Lx9 LINE L1 7287 7439 -205 9 757 234 0 0 0 chr5 22563098 22563124 -129974135 + (TC)n Simple_repeat Simple_repeat 2 27 0 9 757 249 33 0 0 chr5 22563124 22563153 -129974106 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 757 376 205 8 54 chr5 22563154 22563283 -129973976 + Lx9 LINE L1 7515 7637 -7 9 757 229 305 63 99 chr5 22563415 22563557 -129973702 - ORR1E LTR MaLR -179 180 44 9 757 572 101 11 0 chr5 22563949 22564038 -129973221 + (GA)n Simple_repeat Simple_repeat 2 91 0 9 757 203 340 129 66 chr5 22564241 22564622 -129972637 - L2 LINE L2 -722 2697 2293 9 757 2533 56 17 40 chr5 22564919 22565230 -129972029 + ORR1A1 LTR MaLR 1 309 -37 9 757 3389 33 5 0 chr5 22565230 22565624 -129971635 + MTA_Mm LTR MaLR 1 396 0 9 757 2533 56 17 40 chr5 22565624 22565666 -129971593 + ORR1A1 LTR MaLR 310 346 0 9 757 792 249 17 0 chr5 22565935 22566112 -129971147 + B3A SINE B2 1 180 -18 9 757 4722 31 4 2 chr5 22566935 22567492 -129969767 - L1Md_F2 LINE L1 -12 6570 6013 1 757 1782 270 30 45 chr5 22567984 22568477 -129968782 - RLTR19 LTR ERVK 0 499 14 1 757 510 262 22 39 chr5 22568516 22568695 -129968564 - Lx6 LINE L1 -29 7431 7256 1 757 657 276 28 28 chr5 22568703 22568882 -129968377 - B3A SINE B2 -1 197 19 1 757 265 235 24 0 chr5 22569396 22569475 -129967784 - MLT1F2 LTR MaLR 0 560 475 1 757 670 297 135 28 chr5 22569495 22569814 -129967445 - ORR1E LTR MaLR -6 353 1 1 757 301 330 116 23 chr5 22569814 22570006 -129967253 - MLT1F2 LTR MaLR -89 471 258 1 757 545 212 73 133 chr5 22570018 22570236 -129967023 + Lx9 LINE L1 7264 7468 -176 1 757 377 169 12 0 chr5 22570319 22570402 -129966857 + (TA)n Simple_repeat Simple_repeat 1 84 0 1 757 248 275 147 84 chr5 22570414 22570557 -129966702 + MTEb LTR MaLR 121 272 -107 1 757 264 299 134 0 chr5 22570948 22571015 -129966244 + ID SINE ID 1 76 -148 1 757 658 132 25 0 chr5 22571016 22571137 -129966122 + GA-rich Low_complexity Low_complexity 3 126 0 1 757 538 263 47 25 chr5 22571502 22571728 -129965531 - RLTR20B1 LTR ERVK 0 577 335 1 757 788 189 55 34 chr5 22572056 22572371 -129964888 - MYSERV16_I-int LTR ERVK -2151 175 1 1 757 1481 269 61 42 chr5 22573420 22573925 -129963334 - RLTR20B1 LTR ERVK 0 563 49 1 757 430 312 233 33 chr5 22574481 22574726 -129962533 - MER21B LTR ERV1 -367 496 203 1 757 256 349 83 0 chr5 22574752 22574884 -129962375 - MER21B LTR ERV1 -702 161 19 1 757 1139 121 131 0 chr5 22575748 22575947 -129961312 + URR1A DNA MER1_type 2 226 0 1 757 866 308 73 32 chr5 22576033 22576375 -129960884 - MLT1A0 LTR MaLR -9 356 1 1 757 191 95 0 45 chr5 22577132 22577176 -129960083 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 1 757 897 236 42 28 chr5 22577176 22577459 -129959800 - RMER1C Other Other 0 1342 1056 1 757 401 324 89 0 chr5 22577496 22577675 -129959584 + RMER1C Other Other 734 928 -414 1 757 319 137 0 0 chr5 22577716 22577767 -129959492 + RMER1C Other Other 916 966 -376 1 757 185 222 0 100 chr5 22577990 22578050 -129959209 - L4 LINE RTE -1333 696 643 1 757 336 296 37 0 chr5 22578157 22578265 -129958994 + L1M4 LINE L1 5113 5224 -922 1 757 360 260 0 0 chr5 22578330 22578430 -129958829 + L1MC1 LINE L1 5775 5874 -459 1 757 358 235 91 58 chr5 22578423 22578593 -129958666 + L1M4 LINE L1 5234 5427 -753 1 757 1639 32 0 0 chr5 22578593 22578783 -129958476 + B2_Mm1a SINE B2 2 191 -2 1 757 358 214 56 71 chr5 22578783 22578818 -129958441 + L1M4 LINE L1 5428 5454 -730 1 757 1065 284 27 24 chr5 22578822 22578924 -129958335 + L1MB3 LINE L1 5762 5856 -327 1 757 853 293 60 33 chr5 22578924 22579288 -129957971 - MTEa LTR MaLR -4 375 2 1 757 1065 284 27 24 chr5 22579288 22579597 -129957662 + L1MB3 LINE L1 5857 6174 -9 1 757 230 365 29 17 chr5 22581340 22581513 -129955746 - HAL1 LINE L1 -1589 918 744 1 757 288 309 85 7 chr5 22582211 22582364 -129954895 - L1M5 LINE L1 -3475 2671 2507 1 757 3017 296 97 22 chr5 22582876 22584317 -129952942 - Lx8 LINE L1 -451 7022 5447 1 757 24078 143 26 18 chr5 22584642 22588680 -129948579 + Lx LINE L1 549 4651 -2003 1 757 368 0 0 0 chr5 22588680 22588723 -129948536 - B1_Mm SINE Alu -9 138 96 1 757 24078 143 26 18 chr5 22588723 22589925 -129947334 + Lx LINE L1 4652 5874 -780 1 757 414 0 0 0 chr5 22589925 22589971 -129947288 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 757 5533 139 64 9 chr5 22589971 22590713 -129946546 + Lx LINE L1 5875 6650 -4 1 757 21 0 0 0 chr5 22591080 22591101 -129946158 + AT_rich Low_complexity Low_complexity 1 21 0 1 757 603 18 16 83 chr5 22591408 22591529 -129945730 + (TCTCTG)n Simple_repeat Simple_repeat 2 114 0 1 757 1114 59 0 0 chr5 22591644 22591779 -129945480 + B1_Mm SINE Alu 1 135 -12 1 757 549 80 0 0 chr5 22591779 22591854 -129945405 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 1 757 207 0 0 0 chr5 22591855 22591878 -129945381 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 1 757 4059 74 0 49 chr5 22592684 22593255 -129944004 + L1_Mus2 LINE L1 6023 6565 -1 1 757 180 300 11 91 chr5 22594173 22594261 -129942998 + MIRb SINE MIR 121 201 -67 1 757 417 306 162 21 chr5 22594566 22594883 -129942376 - MLT1A0 LTR MaLR -2 363 2 1 757 355 308 56 63 chr5 22594889 22595031 -129942228 + MLT1D LTR MaLR 252 392 -113 1 757 826 299 93 36 chr5 22595273 22595937 -129941322 - L1_Rod LINE L1 -4 5843 5142 1 757 789 276 109 8 chr5 22596090 22596338 -129940921 + B4A SINE B4 2 274 -18 1 757 377 70 18 0 chr5 22596340 22596397 -129940862 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 757 229 299 23 11 chr5 22597693 22597781 -129939478 + G-rich Low_complexity Low_complexity 6 94 0 1 757 509 247 97 6 chr5 22598034 22598209 -129939050 - L1M3 LINE L1 -2022 4118 3928 1 757 186 43 0 0 chr5 22598644 22598667 -129938592 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 1 757 1133 81 0 7 chr5 22598876 22599025 -129938234 + B1_Mus1 SINE Alu 1 148 0 1 757 251 85 0 21 chr5 22599025 22599073 -129938186 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 1 757 558 29 0 0 chr5 22599213 22599281 -129937978 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 757 1668 187 102 21 chr5 22602246 22602628 -129934631 - MTD LTR MaLR -2 417 5 1 757 2053 303 82 31 chr5 22602634 22602693 -129934566 - Lx9 LINE L1 -385 7259 7209 1 757 4584 113 124 6 chr5 22602693 22603167 -129934092 - RMER17D LTR ERVK -4 885 343 1 757 1251 61 0 0 chr5 22603167 22603332 -129933927 + (GGAGA)n Simple_repeat Simple_repeat 2 166 0 1 757 4584 113 124 6 chr5 22603332 22603649 -129933610 - RMER17D LTR ERVK -547 342 2 1 757 2053 303 82 31 chr5 22603649 22604438 -129932821 - Lx9 LINE L1 -436 7208 6367 1 757 434 247 0 6 chr5 22604485 22604648 -129932611 + (TA)n Simple_repeat Simple_repeat 2 163 0 1 757 302 132 0 54 chr5 22604815 22604871 -129932388 + HAL1-3A_ME LINE L1 1966 2018 -840 1 757 585 199 0 0 chr5 22604871 22605017 -129932242 + (CA)n Simple_repeat Simple_repeat 1 146 0 1 757 856 227 13 30 chr5 22605018 22605254 -129932005 - Lx9 LINE L1 -1673 5971 5740 1 757 382 207 157 36 chr5 22605240 22605380 -129931879 + Lx9 LINE L1 5545 5701 -146 1 757 311 161 16 0 chr5 22605713 22605775 -129931484 + Lx6 LINE L1 7018 7080 -380 1 757 26 0 0 0 chr5 22605978 22606004 -129931255 + AT_rich Low_complexity Low_complexity 1 26 0 1 757 443 272 26 9 chr5 22606162 22606277 -129930982 + PB1D10 SINE Alu 1 117 0 1 757 467 259 0 11 chr5 22606382 22606472 -129930787 + B4A SINE B4 142 230 -62 1 757 1176 211 246 47 chr5 22606472 22607004 -129930255 + Lx6 LINE L1 6797 7434 -26 1 757 259 200 0 176 chr5 22607018 22607079 -129930180 + B4A SINE B4 218 274 -18 1 757 210 118 0 0 chr5 22607079 22607113 -129930146 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 757 259 200 0 176 chr5 22607113 22607142 -129930117 + B4A SINE B4 275 292 0 1 757 237 132 0 0 chr5 22607266 22607304 -129929955 + (CTG)n Simple_repeat Simple_repeat 1 38 0 1 757 1310 203 73 24 chr5 22607309 22607504 -129929755 + Lx9 LINE L1 7221 7431 -213 1 757 495 87 0 0 chr5 22607504 22607573 -129929686 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 757 1310 203 73 24 chr5 22607573 22607746 -129929513 + Lx9 LINE L1 7432 7607 -37 1 757 24 0 0 0 chr5 22608169 22608193 -129929066 + AT_rich Low_complexity Low_complexity 1 24 0 1 757 315 288 9 18 chr5 22609257 22609370 -129927889 - PB1D7 SINE Alu -7 113 2 1 757 198 0 0 0 chr5 22609533 22609555 -129927704 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 757 23 33 0 0 chr5 22609913 22609943 -129927316 + AT_rich Low_complexity Low_complexity 1 30 0 1 757 2300 56 0 7 chr5 22610316 22610620 -129926639 - L1Md_F3 LINE L1 -2 6582 6281 1 757 376 292 144 42 chr5 22611762 22612026 -129925233 - LTR89 LTR ERVL? -461 418 128 1 757 215 200 22 0 chr5 22613233 22613278 -129923981 + MIR3 SINE MIR 126 171 -37 1 757 209 366 28 21 chr5 22613808 22613953 -129923306 - MIRb SINE MIR -50 218 73 1 757 402 317 155 52 chr5 22614569 22615476 -129921783 + L2a LINE L2 2099 3149 -277 1 757 278 343 39 0 chr5 22615513 22615615 -129921644 + L2a LINE L2 3321 3426 0 1 757 217 297 0 39 chr5 22615680 22615757 -129921502 - L3 LINE CR1 -192 4297 4224 1 757 1634 160 167 15 chr5 22616092 22616434 -129920825 + ORR1B1 LTR MaLR 1 394 0 1 757 462 18 0 0 chr5 22617189 22617244 -129920015 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 1 757 233 314 36 45 chr5 22617248 22617358 -129919901 - PB1D10 SINE Alu -8 109 1 1 757 470 139 12 0 chr5 22617514 22617600 -129919659 + CT-rich Low_complexity Low_complexity 2 88 0 1 757 408 234 89 0 chr5 22618692 22618816 -129918443 - L1_Mur3 LINE L1 -3595 2285 2151 1 757 6394 55 1 0 chr5 22618835 22619603 -129917656 - L1_Mus1 LINE L1 -2 6565 5797 1 757 25 0 0 0 chr5 22619621 22619646 -129917613 + AT_rich Low_complexity Low_complexity 1 25 0 1 757 1498 223 68 76 chr5 22621241 22621730 -129915529 - RLTR11A LTR ERVK 0 528 44 1 757 1202 68 0 7 chr5 22621790 22621939 -129915320 + B1_Mus1 SINE Alu 1 148 0 1 757 6325 154 32 9 chr5 22621943 22623095 -129914164 - MYSERV16_I-int LTR ERVK -21 2305 1128 1 757 369 265 10 0 chr5 22623755 22623853 -129913406 + PB1D10 SINE Alu 17 115 -2 1 757 298 296 90 57 chr5 22623899 22624110 -129913149 - L1MC2 LINE L1 -10 6334 6117 1 757 250 310 17 42 chr5 22624408 22624526 -129912733 + MamRep1161 DNA TcMar 3 117 -840 1 757 496 244 58 58 chr5 22624890 22625095 -129912164 + L1M5 LINE L1 5265 5469 -725 1 757 463 280 52 26 chr5 22625205 22625396 -129911863 + L1ME5 LINE L1 5661 5856 -338 1 757 558 0 0 0 chr5 22626061 22626123 -129911136 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 1 757 525 16 0 0 chr5 22626899 22626961 -129910298 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 757 274 260 126 31 chr5 22627251 22627378 -129909881 - Charlie5 DNA MER1_type 0 2624 2486 1 757 192 264 123 14 chr5 22627407 22627480 -129909779 + L3 LINE CR1 4146 4226 -263 1 757 2694 309 121 45 chr5 22627605 22628201 -129909058 - MTE-int LTR MaLR -39 1541 886 1 757 4454 172 52 40 chr5 22628201 22628852 -129908407 - RMER17B LTR ERVK 0 958 295 1 757 1205 21 7 0 chr5 22628852 22628993 -129908266 + B1_Mm SINE Alu 4 145 -2 1 757 4454 172 52 40 chr5 22628993 22629288 -129907971 - RMER17B LTR ERVK -664 294 1 1 757 2694 309 121 45 chr5 22629288 22630124 -129907135 - MTE-int LTR MaLR -695 885 1 1 757 214 338 88 0 chr5 22630588 22630724 -129906535 - MIRb SINE MIR -119 149 2 1 757 411 290 75 14 chr5 22630742 22630889 -129906370 - MER5A DNA MER1_type 0 189 34 2 757 1123 79 0 0 chr5 22631835 22631974 -129905285 + B1_Mus1 SINE Alu 1 139 -9 2 757 216 0 0 0 chr5 22631974 22631998 -129905261 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 757 3588 23 0 0 chr5 22632216 22632612 -129904647 - MTA_Mm LTR MaLR 0 396 1 2 757 359 282 142 47 chr5 22632709 22632986 -129904273 - ORR1E LTR MaLR -77 293 1 2 757 5046 60 35 3 chr5 22633861 22634512 -129902747 + L1_Mus1 LINE L1 5896 6567 0 2 757 1423 282 130 30 chr5 22635141 22635623 -129901636 + Lx8 LINE L1 6813 7304 -169 2 757 663 13 0 0 chr5 22635623 22635699 -129901560 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 757 1423 282 130 30 chr5 22635699 22635816 -129901443 + Lx8 LINE L1 7305 7471 -2 2 757 28 29 0 0 chr5 22635819 22635854 -129901405 + AT_rich Low_complexity Low_complexity 1 35 0 2 757 797 302 13 18 chr5 22637017 22637243 -129900016 - B4 SINE B4 -8 284 60 2 757 1520 168 49 52 chr5 22637238 22637583 -129899676 + ORR1B1 LTR MaLR 43 386 -8 2 757 2427 158 62 26 chr5 22637590 22638090 -129899169 + ORR1B1-int LTR MaLR 8 525 -1438 2 757 1087 156 5 5 chr5 22638090 22638277 -129898982 - RLTR11B LTR ERVK 0 453 267 2 757 587 173 20 86 chr5 22639882 22640034 -129897225 + B1_Mus1 SINE Alu 7 148 0 2 757 260 303 15 0 chr5 22640896 22640962 -129896297 + polypurine Low_complexity Low_complexity 3 69 0 2 757 367 183 0 48 chr5 22640966 22641092 -129896167 + G-rich Low_complexity Low_complexity 1 120 0 2 757 2644 125 14 46 chr5 22642158 22642595 -129894664 + Lx4A LINE L1 6635 7057 -1 2 757 300 348 8 0 chr5 22642804 22642922 -129894337 - MER117 DNA MER1_type -6 191 73 2 757 301 239 19 33 chr5 22643091 22643204 -129894055 + L2a LINE L2 3260 3425 -1 2 757 2017 268 98 31 chr5 22643315 22643391 -129893868 - Lx8 LINE L1 -2 7471 7383 2 757 2064 156 79 3 chr5 22643391 22643757 -129893502 + ORR1B1 LTR MaLR 1 394 0 2 757 2017 268 98 31 chr5 22643757 22644307 -129892952 - Lx8 LINE L1 -91 7382 6795 2 757 3717 62 8 10 chr5 22644307 22644792 -129892467 + L1Md_F2 LINE L1 6098 6581 -1 2 757 2017 268 98 31 chr5 22644792 22644941 -129892318 - Lx8 LINE L1 -679 6794 6643 2 757 3297 141 58 0 chr5 22644992 22645510 -129891749 - RMER1B Other Other 0 1066 519 2 757 288 0 0 0 chr5 22645761 22645793 -129891466 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 757 297 0 0 0 chr5 22646765 22646798 -129890461 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 757 965 278 129 45 chr5 22646947 22647103 -129890156 + MLT1C LTR MaLR 3 186 -281 2 757 519 262 27 7 chr5 22647103 22647249 -129890010 + B1F SINE Alu 1 149 0 2 757 965 278 129 45 chr5 22647249 22647517 -129889742 + MLT1C LTR MaLR 187 463 -4 2 757 234 0 0 0 chr5 22647568 22647594 -129889665 + (G)n Simple_repeat Simple_repeat 1 26 0 2 757 1422 84 10 5 chr5 22649086 22649278 -129887981 - B2_Mm1t SINE B2 0 193 1 2 757 211 327 46 18 chr5 22650225 22650334 -129886925 - MER5A DNA MER1_type -72 117 6 2 757 183 42 0 0 chr5 22651700 22651724 -129885535 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 757 895 42 8 0 chr5 22651724 22651842 -129885417 - B1_Mus1 SINE Alu -13 135 17 2 757 1226 215 45 162 chr5 22653296 22653807 -129883452 - RLTR18 LTR ERVK -165 451 1 2 757 299 239 0 0 chr5 22655059 22655130 -129882129 + MER5A DNA MER1_type 14 84 -105 2 757 258 105 0 0 chr5 22655537 22655575 -129881684 + (TCCC)n Simple_repeat Simple_repeat 2 39 0 2 757 559 242 73 0 chr5 22656683 22656807 -129880452 + ID_B1 SINE B4 87 219 -5 2 757 672 258 174 92 chr5 22656843 22657313 -129879946 + L1MB2 LINE L1 5566 6074 -97 2 757 2162 103 31 12 chr5 22658948 22659271 -129877988 - ORR1A4 LTR MaLR 0 329 1 2 757 1010 76 6 42 chr5 22659271 22659436 -129877823 - ORR1A4-int LTR MaLR 0 1963 1805 2 757 1444 174 80 155 chr5 22659432 22659942 -129877317 - RMER2 LTR ERV1 -73 494 23 2 757 495 33 0 0 chr5 22659942 22660003 -129877256 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 757 565 79 11 0 chr5 22660027 22660116 -129877143 - ORR1A4-int LTR MaLR -1844 119 30 2 757 607 262 66 13 chr5 22660168 22660319 -129876940 + RSINE1 SINE B4 4 162 -3 2 757 959 221 39 0 chr5 22660333 22660537 -129876722 + B3 SINE B2 3 214 -2 2 757 947 258 77 34 chr5 22660989 22661338 -129875921 - MLT1A0 LTR MaLR -1 364 1 2 757 702 0 0 0 chr5 22662095 22662173 -129875086 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 757 401 125 34 11 chr5 22662412 22662501 -129874758 + CT-rich Low_complexity Low_complexity 4 94 0 2 757 9627 58 11 4 chr5 22662721 22664601 -129872658 + MusHAL1 LINE L1 11 1905 -1448 2 757 594 256 145 11 chr5 22664645 22664831 -129872428 - B3 SINE B2 -4 212 2 2 757 28 61 0 0 chr5 22665067 22665116 -129872143 + AT_rich Low_complexity Low_complexity 1 49 0 2 757 603 0 0 0 chr5 22665527 22665594 -129871665 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 757 1347 72 0 0 chr5 22666787 22666967 -129870292 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 757 645 80 0 0 chr5 22666968 22667056 -129870203 + (TGGA)n Simple_repeat Simple_repeat 3 90 0 2 757 24 0 0 0 chr5 22667661 22667685 -129869574 + AT_rich Low_complexity Low_complexity 1 24 0 2 757 708 234 89 75 chr5 22667698 22667911 -129869348 + B3 SINE B2 1 216 0 2 757 837 114 42 14 chr5 22668177 22668319 -129868940 + B1_Mur3 SINE Alu 2 147 -2 2 757 232 271 0 0 chr5 22668381 22668429 -129868830 + polypurine Low_complexity Low_complexity 2 49 0 2 757 23 0 0 0 chr5 22671285 22671308 -129865951 + AT_rich Low_complexity Low_complexity 1 23 0 2 757 1757 123 259 20 chr5 22673646 22673993 -129863266 - RLTR23 LTR ERV1 0 430 1 2 757 306 152 0 0 chr5 22674640 22674699 -129862560 + (TA)n Simple_repeat Simple_repeat 2 60 0 2 757 1200 84 6 0 chr5 22674795 22675336 -129861923 + (TG)n Simple_repeat Simple_repeat 1 544 0 2 94 562 294 91 24 chr5 22675408 22675662 -129861597 - Lx8 LINE L1 -201 7272 7002 2 758 296 276 28 19 chr5 22675685 22675792 -129861467 + (CATA)n Simple_repeat Simple_repeat 3 110 0 2 758 547 331 0 7 chr5 22675792 22675941 -129861318 - RSINE1 SINE B4 -16 149 2 2 758 1357 239 127 28 chr5 22675945 22676371 -129860888 - Lx8 LINE L1 -457 7016 6549 2 758 8403 27 1 4 chr5 22676749 22678188 -129859071 - L1Md_F2 LINE L1 -1 6581 5150 2 758 1865 185 82 14 chr5 22678346 22678831 -129858428 - Lx4B LINE L1 -3 6973 6409 2 758 349 333 33 8 chr5 22678832 22678953 -129858306 + B1_Mur4 SINE Alu 20 143 -7 2 758 648 140 0 0 chr5 22680256 22680363 -129856896 + (TC)n Simple_repeat Simple_repeat 2 108 0 2 758 611 278 61 61 chr5 22680702 22680947 -129856312 + Tigger7 DNA MER2_type 12 256 -2235 2 758 684 35 0 0 chr5 22680947 22681034 -129856225 + (CATATA)n Simple_repeat Simple_repeat 2 88 0 2 758 24 53 0 0 chr5 22681043 22681081 -129856178 + AT_rich Low_complexity Low_complexity 1 38 0 2 758 297 405 25 15 chr5 22681103 22681306 -129855953 + MamGypLTR2 LTR Gypsy 503 707 -482 2 758 1198 55 0 0 chr5 22681704 22681850 -129855409 + B1_Mus2 SINE Alu 1 146 -1 2 758 477 0 0 0 chr5 22681850 22681903 -129855356 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 758 752 278 160 3 chr5 22682297 22682579 -129854680 + MLT1A0 LTR MaLR 40 365 0 2 758 204 40 0 0 chr5 22683857 22683882 -129853377 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 758 1200 213 62 23 chr5 22683918 22684178 -129853081 - Lx8 LINE L1 -121 7352 7083 2 758 578 302 11 17 chr5 22684492 22684667 -129852592 + Lx8 LINE L1 6595 6768 -705 2 758 1289 313 38 42 chr5 22685111 22685636 -129851623 + Lx8 LINE L1 6880 7458 -186 2 758 459 0 0 0 chr5 22685636 22685687 -129851572 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 758 1289 350 24 19 chr5 22685687 22685828 -129851431 + Lx8 LINE L1 7333 7466 -7 2 758 433 276 60 0 chr5 22685929 22686045 -129851214 + RMER1A Other Other 128 250 -780 2 758 1807 167 257 28 chr5 22686056 22686480 -129850779 + RMER1B Other Other 364 884 -182 2 758 952 181 107 0 chr5 22687284 22687500 -129849759 + RMER1A Other Other 792 1030 0 2 758 436 283 74 68 chr5 22687528 22687582 -129849677 + B3A SINE B2 2 55 -143 2 758 606 61 0 0 chr5 22687582 22687664 -129849595 + L1_Mus2 LINE L1 6485 6566 0 2 758 436 283 74 68 chr5 22687664 22687757 -129849502 + B3A SINE B2 56 150 -48 2 758 441 0 0 0 chr5 22687764 22687813 -129849446 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 758 230 372 19 10 chr5 22687922 22687933 -129849326 + ID_B1 SINE B4 83 186 -38 2 758 272 297 54 11 chr5 22687933 22688025 -129849234 + B1F2 SINE Alu 13 108 -41 2 758 397 332 134 41 chr5 22688568 22688860 -129848399 + MLT1F2 LTR MaLR 5 323 -237 2 758 324 0 0 0 chr5 22689005 22689041 -129848218 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 758 594 0 0 0 chr5 22689825 22689891 -129847368 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 758 3335 38 114 32 chr5 22690857 22691296 -129845963 + IAPLTR2_Mm LTR ERVK 1 475 0 2 758 1184 93 10 85 chr5 22691297 22691497 -129845762 + IAPEz-int LTR ERVK 9 193 -6288 2 758 235 309 0 0 chr5 22691497 22691552 -129845707 + RLTR27 LTR ERVK 221 275 -34 2 758 924 53 9 0 chr5 22691552 22691666 -129845593 + IAPEz-int LTR ERVK 168 282 -6199 2 758 10773 58 45 33 chr5 22691669 22693104 -129844155 + IAPEz-int LTR ERVK 211 1663 -4818 2 758 6345 61 14 12 chr5 22693106 22693920 -129843339 + IAPEz-int LTR ERVK 5665 6479 -2 2 758 3328 38 114 32 chr5 22693922 22694361 -129842898 + IAPLTR2_Mm LTR ERVK 1 475 0 2 758 672 256 99 174 chr5 22694597 22694970 -129842289 + MLT1C LTR MaLR 40 461 -6 2 758 357 153 0 0 chr5 22695034 22695106 -129842153 + GA-rich Low_complexity Low_complexity 1 72 0 2 758 590 325 35 0 chr5 22695195 22695398 -129841861 + ID_B1 SINE B4 14 223 -1 2 758 576 162 0 10 chr5 22696282 22696382 -129840877 - B1_Mur2 SINE Alu -7 142 44 2 758 551 250 67 72 chr5 22696408 22696602 -129840657 + B3A SINE B2 1 193 -5 2 758 439 267 28 68 chr5 22696657 22696834 -129840425 + Lx9 LINE L1 7017 7186 -458 2 758 216 67 0 0 chr5 22696835 22696865 -129840394 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 2 758 19705 75 8 6 chr5 22696920 22698032 -129839227 - L1VL4 LINE L1 0 3559 2443 2 758 207 0 0 0 chr5 22698032 22698055 -129839204 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 2 758 19705 85 7 5 chr5 22698055 22700463 -129836796 - L1VL4 LINE L1 -1117 2442 29 2 758 769 291 41 28 chr5 22700531 22700923 -129836336 + Lx9 LINE L1 7248 7644 0 2 758 324 120 0 0 chr5 22702247 22702297 -129834962 + (A)n Simple_repeat Simple_repeat 1 50 0 2 758 189 300 17 0 chr5 22702325 22702385 -129834874 - L2 LINE L2 -994 2425 2365 2 758 231 286 130 28 chr5 22703381 22703489 -129833770 + L1M5 LINE L1 5791 5909 -331 3 758 714 24 0 0 chr5 22703722 22703806 -129833453 + (TC)n Simple_repeat Simple_repeat 1 84 0 3 758 711 0 0 0 chr5 22705511 22705590 -129831669 + (TC)n Simple_repeat Simple_repeat 2 80 0 3 758 726 156 0 0 chr5 22705801 22705936 -129831323 + (TG)n Simple_repeat Simple_repeat 2 136 0 3 758 249 292 0 15 chr5 22706228 22706294 -129830965 - MER3 DNA MER1_type -98 111 47 3 758 750 283 0 0 chr5 22706323 22706475 -129830784 + RSINE1 SINE B4 2 153 -12 3 758 528 16 0 0 chr5 22707165 22707226 -129830033 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 3 758 482 189 21 64 chr5 22707252 22707439 -129829820 + RMER17C LTR ERVK 96 274 -136 3 758 588 282 97 39 chr5 22707991 22708249 -129829010 + B4A SINE B4 5 277 -15 3 758 353 127 13 0 chr5 22708296 22708375 -129828884 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 758 441 0 0 0 chr5 22708376 22708425 -129828834 + (CTA)n Simple_repeat Simple_repeat 3 51 0 3 758 644 244 93 16 chr5 22710808 22710991 -129826268 + B3 SINE B2 15 211 -5 3 758 233 278 83 0 chr5 22711534 22711606 -129825653 - MER20 DNA MER1_type -138 81 4 3 758 310 226 85 11 chr5 22712318 22712412 -129824847 + MIR3 SINE MIR 101 201 -7 3 758 390 151 0 0 chr5 22712976 22713049 -129824210 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 3 758 12545 66 7 1 chr5 22713310 22714951 -129822308 + MusHAL1 LINE L1 1061 2712 0 3 758 355 282 35 14 chr5 22715722 22715876 -129821383 + MIR SINE MIR 11 175 -93 3 758 400 261 48 48 chr5 22716102 22716247 -129821012 - L2a LINE L2 0 3426 3282 3 758 691 231 0 0 chr5 22716258 22716388 -129820871 + B3 SINE B2 1 130 -86 3 758 209 33 0 32 chr5 22716423 22716454 -129820805 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 3 758 748 156 0 0 chr5 22716454 22716576 -129820683 + B1_Mus1 SINE Alu 2 123 -25 3 758 798 229 0 0 chr5 22717781 22717925 -129819334 - B1_Mur1 SINE Alu -5 144 1 3 758 297 234 0 30 chr5 22717937 22718003 -129819256 - PB1D10 SINE Alu -6 111 48 3 758 339 282 18 0 chr5 22718711 22718821 -129818438 + MER3 DNA MER1_type 25 136 -73 3 758 343 282 130 27 chr5 22719480 22719626 -129817633 + RSINE1 SINE B4 5 165 0 3 758 216 0 0 0 chr5 22719632 22719656 -129817603 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 3 758 1047 235 5 0 chr5 22719739 22719943 -129817316 - B3 SINE B2 -6 210 6 3 758 280 83 33 16 chr5 22720178 22720239 -129817020 + (TTTTG)n Simple_repeat Simple_repeat 4 65 0 3 758 1248 119 11 11 chr5 22720847 22721034 -129816225 + B2_Mm2 SINE B2 1 187 -8 3 758 30 27 0 0 chr5 22721510 22721547 -129815712 + AT_rich Low_complexity Low_complexity 1 37 0 3 758 268 186 150 17 chr5 22722365 22722425 -129814834 - ID4 SINE ID -14 69 2 3 758 873 152 0 0 chr5 22723034 22723278 -129813981 + (CA)n Simple_repeat Simple_repeat 1 244 0 3 758 300 83 0 0 chr5 22723307 22723355 -129813904 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 758 756 242 22 62 chr5 22723378 22723488 -129813771 + B3 SINE B2 1 111 -105 3 758 3294 62 0 7 chr5 22723488 22723912 -129813347 + BGLII LTR ERVK 1 421 0 3 758 756 242 22 62 chr5 22723912 22724026 -129813233 + B3 SINE B2 112 216 0 3 758 760 248 170 58 chr5 22724176 22724488 -129812771 - MTE2a LTR MaLR -9 370 24 3 758 304 239 22 11 chr5 22726293 22726382 -129810877 - RMER15 LTR ERVL -51 524 435 3 758 270 311 129 16 chr5 22726456 22726580 -129810679 - Lx8 LINE L1 -299 7174 7037 3 758 477 0 0 0 chr5 22727100 22727153 -129810106 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 758 512 296 26 31 chr5 22727334 22727526 -129809733 - MIR SINE MIR -36 226 36 3 758 292 325 25 0 chr5 22728574 22728654 -129808605 + ID4 SINE ID 1 82 -1 3 758 231 411 0 0 chr5 22728689 22728818 -129808441 + (CA)n Simple_repeat Simple_repeat 1 129 0 3 758 1127 99 32 47 chr5 22729768 22729958 -129807301 - B2_Mm2 SINE B2 -8 187 1 3 758 680 149 340 6 chr5 22730239 22730401 -129806858 - B3 SINE B2 0 216 1 3 758 180 0 0 0 chr5 22731143 22731163 -129806096 + (A)n Simple_repeat Simple_repeat 1 20 0 3 758 297 325 87 9 chr5 22731700 22731815 -129805444 + MER5A DNA MER1_type 2 125 -64 3 758 23 54 0 0 chr5 22732212 22732249 -129805010 + AT_rich Low_complexity Low_complexity 1 37 0 3 758 526 182 47 16 chr5 22732887 22733015 -129804244 + ID_B1 SINE B4 2 133 -91 3 758 364 301 0 31 chr5 22733072 22733199 -129804060 + CT-rich Low_complexity Low_complexity 3 125 0 3 758 25266 136 24 25 chr5 22733331 22736759 -129800500 - Lx2 LINE L1 -75 6922 3492 3 758 198 0 0 0 chr5 22736759 22736781 -129800478 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 758 25266 156 28 26 chr5 22736781 22737711 -129799548 - Lx2 LINE L1 -2395 3491 2616 3 758 468 0 0 0 chr5 22737711 22737763 -129799496 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 758 25266 147 22 26 chr5 22737763 22739399 -129797860 - Lx2 LINE L1 -3271 2615 950 3 758 4228 57 0 6 chr5 22739399 22739924 -129797335 - L1_Mus1 LINE L1 0 6567 6046 3 758 3081 151 40 24 chr5 22739924 22740119 -129797140 - Lx2 LINE L1 -5685 949 742 3 758 2295 207 13 30 chr5 22740220 22740693 -129796566 - Lx LINE L1 -77 6577 6113 3 758 1128 88 0 0 chr5 22740714 22740861 -129796398 - B1_Mus1 SINE Alu 0 148 2 3 758 498 61 0 0 chr5 22741032 22741098 -129796161 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 758 789 146 0 34 chr5 22741140 22741317 -129795942 + GA-rich Low_complexity Low_complexity 3 173 0 3 758 436 403 88 48 chr5 22741413 22741812 -129795447 + MER45C DNA Tip100 259 673 -280 3 758 427 287 119 41 chr5 22741992 22742286 -129794973 + MER45B DNA Tip100 720 1036 -4 3 758 413 315 21 7 chr5 22742461 22742605 -129794654 - B1F1 SINE Alu -2 147 2 3 758 231 250 12 95 chr5 22743069 22743153 -129794106 - MER34A1 LTR ERV1 -498 89 13 3 758 210 37 0 0 chr5 22743303 22743330 -129793929 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 3 758 351 80 38 48 chr5 22743389 22743494 -129793765 + T-rich Low_complexity Low_complexity 3 106 0 3 758 287 169 31 30 chr5 22743494 22743584 -129793675 - B1_Mm SINE Alu 0 149 57 3 758 850 194 161 0 chr5 22745214 22745400 -129791859 + B3 SINE B2 1 216 0 3 758 258 301 14 14 chr5 22746235 22746309 -129790950 + ID_B1 SINE B4 134 207 -17 3 758 617 269 145 65 chr5 22746374 22746664 -129790595 + L1MC1 LINE L1 6013 6325 -8 3 758 314 327 132 15 chr5 22747145 22747350 -129789909 + L3 LINE CR1 3514 3742 -747 3 758 337 341 30 8 chr5 22747476 22747609 -129789650 + RSINE1 SINE B4 1 136 -29 3 758 1340 60 6 0 chr5 22747623 22747941 -129789318 + (CA)n Simple_repeat Simple_repeat 1 320 0 3 758 226 0 0 56 chr5 22747987 22748023 -129789236 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 758 1158 51 0 0 chr5 22748023 22748160 -129789099 - B1_Mus2 SINE Alu -10 137 1 3 758 969 121 146 0 chr5 22748168 22748333 -129788926 - B2_Mm2 SINE B2 -6 189 1 3 758 5113 144 28 5 chr5 22748335 22749195 -129788064 - RMER19B LTR ERVK -19 883 4 3 758 311 0 26 0 chr5 22749195 22749234 -129788025 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 758 640 290 98 35 chr5 22749565 22749972 -129787287 + L1MA4 LINE L1 5339 5764 -116 3 758 621 40 0 0 chr5 22749972 22750048 -129787211 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 758 419 213 46 0 chr5 22750048 22750156 -129787103 + L1MA4 LINE L1 5803 5915 -385 3 758 348 24 0 0 chr5 22750387 22750428 -129786831 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 758 338 237 22 4 chr5 22750493 22750603 -129786656 - L1MA5 LINE L1 -29 6271 6153 3 758 257 310 130 7 chr5 22750609 22750755 -129786504 - L1MA5 LINE L1 -22 6278 6115 3 758 270 275 56 56 chr5 22751776 22751884 -129785375 + MIR SINE MIR 56 163 -99 3 758 2552 156 72 42 chr5 22751884 22752428 -129784831 - RLTR20B2 LTR ERVK 0 560 1 3 758 1183 135 119 5 chr5 22752472 22752673 -129784586 - URR1A DNA MER1_type 0 226 3 3 758 408 278 62 0 chr5 22752795 22752892 -129784367 + PB1D10 SINE Alu 15 117 0 3 758 895 191 39 43 chr5 22752904 22753112 -129784147 + B3 SINE B2 8 214 -2 3 758 216 302 168 56 chr5 22753220 22753434 -129783825 + MIR SINE MIR 12 249 -13 3 758 2206 119 73 154 chr5 22753454 22753922 -129783337 - RLTR23 LTR ERV1 0 430 1 3 758 502 197 115 0 chr5 22755393 22755515 -129781744 + B1F2 SINE Alu 7 142 -7 3 758 726 233 97 5 chr5 22755687 22755894 -129781365 + RLTR16 LTR ERVK 1 226 -279 3 758 230 330 103 9 chr5 22757003 22757110 -129780149 + RSINE1 SINE B4 46 162 -3 3 758 192 135 0 0 chr5 22757114 22757151 -129780108 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 758 204 125 0 0 chr5 22757306 22757338 -129779921 + (GAA)n Simple_repeat Simple_repeat 2 33 0 3 758 542 245 55 20 chr5 22758597 22758743 -129778516 - RSINE1 SINE B4 -3 162 12 3 758 1478 217 122 15 chr5 22759302 22759770 -129777489 - RLTR20B3 LTR ERVK -42 535 18 3 758 1118 208 213 14 chr5 22759914 22760261 -129776998 + MTC LTR MaLR 1 416 -5 3 758 267 348 65 0 chr5 22760270 22760425 -129776834 + L2a LINE L2 2258 2422 -997 3 758 1066 112 11 0 chr5 22760516 22760694 -129776565 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 758 397 300 123 5 chr5 22761258 22761487 -129775772 + L2a LINE L2 3146 3425 -1 3 758 238 328 0 0 chr5 22762247 22762314 -129774945 + PB1D10 SINE Alu 1 67 -50 3 758 242 267 8 118 chr5 22762482 22762601 -129774658 + B4A SINE B4 187 292 0 3 758 540 141 44 0 chr5 22762651 22762786 -129774473 + (CA)n Simple_repeat Simple_repeat 1 141 0 3 758 270 0 0 0 chr5 22762786 22762816 -129774443 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 758 540 0 0 0 chr5 22763153 22763213 -129774046 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 758 1946 170 51 32 chr5 22763855 22764226 -129773033 - ORR1C1 LTR MaLR 0 378 1 4 758 193 245 41 0 chr5 22764247 22764296 -129772963 + MIRm SINE MIR 44 94 -182 4 758 450 0 0 0 chr5 22765057 22765107 -129772152 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 758 981 153 0 0 chr5 22765127 22765271 -129771988 + B1_Mur4 SINE Alu 2 145 -5 4 758 205 171 0 0 chr5 22765271 22765306 -129771953 + GA-rich Low_complexity Low_complexity 3 37 0 4 758 195 69 0 0 chr5 22765306 22765335 -129771924 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 4 758 1172 106 0 6 chr5 22765342 22765522 -129771737 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 4 758 254 248 83 45 chr5 22765523 22765679 -129771580 - Lx9 LINE L1 -28 7616 7455 4 758 5699 210 52 106 chr5 22765998 22766654 -129770605 - Lx5 LINE L1 -22 7028 6453 4 758 993 41 0 0 chr5 22766654 22766776 -129770483 + (TTC)n Simple_repeat Simple_repeat 3 124 0 4 758 5699 198 45 63 chr5 22766776 22768131 -129769128 - Lx5 LINE L1 -598 6452 5094 4 758 902 161 12 18 chr5 22768149 22768314 -129768945 + L1_Mur2 LINE L1 4170 4333 -1544 4 758 10588 166 23 29 chr5 22768303 22769565 -129767694 - Lx5 LINE L1 -2275 3602 2326 4 758 369 0 0 0 chr5 22769565 22769606 -129767653 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 4 758 10588 166 23 29 chr5 22769606 22770487 -129766772 - Lx5 LINE L1 -3552 2325 1470 4 758 264 30 0 0 chr5 22770500 22770533 -129766726 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 4 758 2095 57 11 0 chr5 22770535 22770797 -129766462 - L1Md_F3 LINE L1 -607 5977 5713 4 758 315 179 47 12 chr5 22770798 22770883 -129766376 - RMER12 LTR ERVK -93 1229 1142 4 758 1273 70 36 41 chr5 22770928 22771123 -129766136 + B2_Mm2 SINE B2 2 195 0 4 758 227 192 0 0 chr5 22771144 22771196 -129766063 + A-rich Low_complexity Low_complexity 4 55 0 4 758 4777 148 72 45 chr5 22771223 22772256 -129765003 - RMER12 LTR ERVK -262 1060 1 4 758 553 251 59 62 chr5 22772256 22772563 -129764696 + L1MA4A LINE L1 5703 6008 -1465 4 758 450 0 0 0 chr5 22772667 22772717 -129764542 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 758 556 273 18 18 chr5 22773719 22773883 -129763376 + RSINE1 SINE B4 2 165 0 4 758 21 0 0 0 chr5 22773900 22773921 -129763338 + AT_rich Low_complexity Low_complexity 1 21 0 4 758 414 0 0 0 chr5 22774274 22774320 -129762939 + (TTG)n Simple_repeat Simple_repeat 2 47 0 4 758 679 178 39 0 chr5 22774320 22774449 -129762810 - B1_Mur1 SINE Alu -5 144 11 4 758 467 294 18 6 chr5 22774551 22774715 -129762544 + MER5A1 DNA MER1_type 1 166 0 4 758 840 126 8 0 chr5 22776927 22777054 -129760205 - B1_Mus2 SINE Alu -9 138 11 4 758 902 195 79 15 chr5 22777083 22777286 -129759973 - B3 SINE B2 0 216 1 4 758 403 292 9 17 chr5 22778149 22778264 -129758995 + PB1D10 SINE Alu 1 114 -3 4 758 212 211 31 82 chr5 22778310 22778408 -129758851 + (GAATG)n Simple_repeat Simple_repeat 2 94 0 4 758 575 237 0 0 chr5 22778879 22778997 -129758262 - ID_B1 SINE B4 -8 216 99 4 758 29 47 0 0 chr5 22781377 22781420 -129755839 + AT_rich Low_complexity Low_complexity 1 43 0 4 758 1106 253 91 15 chr5 22781467 22781796 -129755463 - ORR1E LTR MaLR 0 359 6 4 758 1226 172 59 0 chr5 22782282 22782486 -129754773 + B3 SINE B2 1 216 0 4 758 518 254 16 8 chr5 22782540 22782667 -129754592 + B1_Mur1 SINE Alu 4 131 -18 4 758 219 297 67 29 chr5 22783680 22783784 -129753475 + PB1D10 SINE Alu 10 117 0 4 758 455 87 14 0 chr5 22783798 22783867 -129753392 + (GGGA)n Simple_repeat Simple_repeat 4 73 0 4 758 978 175 0 3 chr5 22783933 22784298 -129752961 + (CA)n Simple_repeat Simple_repeat 1 363 0 4 758 420 297 71 50 chr5 22785618 22785928 -129751331 + B4 SINE B4 1 274 -18 4 758 1162 270 141 24 chr5 22786051 22786507 -129750752 + Lx6 LINE L1 6538 7432 -28 4 758 500 56 28 0 chr5 22786507 22786578 -129750681 + (CATA)n Simple_repeat Simple_repeat 2 74 0 4 758 395 234 195 31 chr5 22786595 22786754 -129750505 + B4A SINE B4 108 292 0 4 758 263 140 20 0 chr5 22786884 22786934 -129750325 + GA-rich Low_complexity Low_complexity 2 52 0 4 758 390 213 10 78 chr5 22787127 22787229 -129750030 + B1F SINE Alu 53 147 -2 4 758 187 93 23 23 chr5 22787229 22787273 -129749986 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 4 758 902 28 15 0 chr5 22787433 22787563 -129749696 + B1_Mus1 SINE Alu 1 148 0 4 758 231 61 0 0 chr5 22787566 22787599 -129749660 + (A)n Simple_repeat Simple_repeat 1 33 0 4 758 525 220 31 223 chr5 22787601 22787775 -129749484 + B3 SINE B2 40 210 -6 4 758 1970 33 49 16 chr5 22787775 22788020 -129749239 + L1Md_F2 LINE L1 6330 6582 0 4 758 218 220 31 223 chr5 22788020 22788038 -129749221 + B2_Mm2 SINE B2 181 194 -1 4 758 234 139 42 0 chr5 22788084 22788156 -129749103 + (TAAA)n Simple_repeat Simple_repeat 4 78 0 4 758 1228 204 0 0 chr5 22788181 22788397 -129748862 - B3 SINE B2 0 216 1 4 758 5305 64 24 23 chr5 22788423 22789404 -129747855 + Lx3_Mus LINE L1 5185 6176 -833 4 758 319 279 69 35 chr5 22789732 22789877 -129747382 + MTEa LTR MaLR 230 379 0 4 758 477 0 0 0 chr5 22789944 22789997 -129747262 + (TAA)n Simple_repeat Simple_repeat 3 55 0 4 758 529 233 108 8 chr5 22790319 22790449 -129746810 + B1F SINE Alu 1 143 -6 4 758 723 127 88 22 chr5 22790568 22790705 -129746554 + B1_Mus1 SINE Alu 2 147 -1 4 758 287 285 65 0 chr5 22791012 22791105 -129746154 - B1F2 SINE Alu -49 101 2 4 758 204 40 0 0 chr5 22791156 22791181 -129746078 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 4 758 696 297 61 4 chr5 22791240 22791284 -129745975 + L1_Rod LINE L1 5527 5580 -267 4 758 549 0 0 0 chr5 22791284 22791345 -129745914 + (TC)n Simple_repeat Simple_repeat 1 61 0 4 758 736 310 35 18 chr5 22791345 22791631 -129745628 + Lx7 LINE L1 5619 5909 -1787 4 758 267 161 0 0 chr5 22791637 22791693 -129745566 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 758 655 293 65 51 chr5 22792276 22792730 -129744529 + RLTR12B LTR ERVK 47 490 -38 4 758 1270 256 59 27 chr5 22792732 22793141 -129744118 - Lx8 LINE L1 -247 7226 6805 4 758 357 198 21 21 chr5 22793253 22793346 -129743913 + L1M5 LINE L1 5683 5775 -387 4 758 727 221 84 56 chr5 22793356 22793605 -129743654 - Lx8 LINE L1 -31 7442 7187 4 758 967 244 116 39 chr5 22793610 22793995 -129743264 + L1MB4 LINE L1 5700 6122 -58 4 758 398 275 155 28 chr5 22794076 22794218 -129743041 + Lx8 LINE L1 7133 7292 -181 4 758 408 163 0 0 chr5 22794568 22794654 -129742605 + (TG)n Simple_repeat Simple_repeat 1 86 0 4 758 385 229 0 12 chr5 22794713 22794797 -129742462 - B3A SINE B2 -115 83 1 4 758 219 180 0 39 chr5 22794815 22794867 -129742392 + GA-rich Low_complexity Low_complexity 2 51 0 4 758 399 160 0 0 chr5 22794913 22794988 -129742271 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 758 414 0 0 0 chr5 22795152 22795198 -129742061 + (A)n Simple_repeat Simple_repeat 1 46 0 4 758 212 200 0 0 chr5 22796374 22796409 -129740850 - ID4_ SINE ID -3 80 46 4 758 341 258 42 68 chr5 22797132 22797323 -129739936 + RMER10A LTR ERVL 241 426 -16 4 758 892 200 126 0 chr5 22797742 22797932 -129739327 - B3 SINE B2 0 216 3 4 758 262 264 0 54 chr5 22798107 22798163 -129739096 - ID_B1 SINE B4 -90 134 82 4 758 322 306 99 87 chr5 22798198 22798359 -129738900 + RSINE1 SINE B4 3 165 0 4 758 26 30 0 0 chr5 22798374 22798407 -129738852 + AT_rich Low_complexity Low_complexity 1 33 0 4 758 360 0 0 0 chr5 22798408 22798448 -129738811 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 758 1393 215 62 16 chr5 22798794 22799101 -129738158 + RodERV21-int LTR ERV1 2 322 -4669 4 758 553 248 53 20 chr5 22799079 22799231 -129738028 + RodERV21-int LTR ERV1 457 613 -4378 4 758 879 264 96 68 chr5 22799256 22799683 -129737576 + RLTR12B LTR ERVK 47 485 -43 4 758 387 250 58 0 chr5 22799802 22799906 -129737353 + RodERV21-int LTR ERV1 629 738 -4253 4 758 23937 47 13 12 chr5 22801992 22805680 -129731579 + L1Md_F2 LINE L1 422 4115 -1768 4 758 3995 20 0 0 chr5 22805663 22806118 -129731141 + L1Md_F2 LINE L1 5131 5585 -298 4 94 8139 51 2 3 chr5 22806119 22807115 -129730144 + L1Md_F2 LINE L1 5587 6581 -1 4 759 500 311 0 52 chr5 22807123 22807296 -129729963 - RSINE1 SINE B4 0 165 2 4 759 33 25 0 0 chr5 22807296 22807336 -129729923 + AT_rich Low_complexity Low_complexity 1 40 0 4 759 1634 220 66 3 chr5 22808215 22808607 -129728652 + MTD LTR MaLR 3 419 0 4 759 1048 222 0 0 chr5 22808990 22809206 -129728053 - B3 SINE B2 0 216 1 4 759 21 36 0 0 chr5 22809226 22809254 -129728005 + AT_rich Low_complexity Low_complexity 1 28 0 4 759 379 309 55 39 chr5 22809332 22809460 -129727799 - RSINE1 SINE B4 0 165 36 4 759 405 39 0 0 chr5 22809475 22809526 -129727733 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 759 542 297 122 5 chr5 22809527 22809740 -129727519 - B4 SINE B4 -35 257 20 4 759 5586 113 34 6 chr5 22811262 22812123 -129725136 + RMER17D LTR ERVK 3 887 -2 4 759 1709 124 0 0 chr5 22817533 22817791 -129719468 + L1_Mm LINE L1 3814 4071 -1812 4 759 5391 72 6 1 chr5 22817791 22818495 -129718764 + L1_Mus2 LINE L1 5858 6564 -2 4 759 861 241 45 0 chr5 22818529 22818728 -129718531 + B3 SINE B2 1 208 -8 4 759 6707 32 11 7 chr5 22819055 22819863 -129717396 - L1Md_F2 LINE L1 -3 6579 5769 4 759 255 39 98 0 chr5 22820163 22820214 -129717045 + (AGTTG)n Simple_repeat Simple_repeat 1 56 0 4 759 623 195 0 0 chr5 22820527 22820645 -129716614 + B1_Mur2 SINE Alu 2 119 -30 4 759 204 221 8 42 chr5 22820658 22820705 -129716554 + polypurine Low_complexity Low_complexity 2 47 0 4 759 1239 41 0 0 chr5 22820705 22820852 -129716407 + B1_Mus2 SINE Alu 1 147 0 4 759 204 221 8 42 chr5 22820852 22820922 -129716337 + GA-rich Low_complexity Low_complexity 48 115 0 4 759 248 254 15 0 chr5 22821484 22821551 -129715708 - L1M5 LINE L1 -1121 5025 4958 5 759 35 0 0 0 chr5 22821689 22821724 -129715535 + AT_rich Low_complexity Low_complexity 1 35 0 5 759 238 336 64 0 chr5 22821728 22821853 -129715406 - B1F1 SINE Alu -12 137 5 5 759 243 241 89 36 chr5 22821901 22822013 -129715246 - L1M5 LINE L1 -1543 4603 4486 5 759 690 44 0 0 chr5 22822035 22822125 -129715134 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 759 589 271 20 14 chr5 22822129 22822275 -129714984 - B3A SINE B2 -50 148 2 5 759 689 135 8 0 chr5 22822378 22822504 -129714755 + (GA)n Simple_repeat Simple_repeat 2 128 0 5 759 262 220 119 0 chr5 22822533 22822592 -129714667 - RSINE1 SINE B4 -98 67 2 5 759 450 0 0 0 chr5 22822637 22822687 -129714572 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 759 358 229 0 14 chr5 22822691 22822762 -129714497 - ID4 SINE ID -12 71 2 5 759 391 244 117 120 chr5 22822920 22823321 -129713938 - L1MC5 LINE L1 -173 7788 7389 5 759 345 282 107 19 chr5 22823324 22823483 -129713776 + Lx8 LINE L1 7288 7460 -13 5 759 614 140 9 0 chr5 22824030 22824144 -129713115 + (TCTA)n Simple_repeat Simple_repeat 2 116 0 5 759 4421 92 2 15 chr5 22824144 22824808 -129712451 - L1_Mus2 LINE L1 0 6566 5967 5 759 666 0 0 0 chr5 22824808 22824882 -129712377 + (TTC)n Simple_repeat Simple_repeat 2 75 0 5 759 556 203 0 47 chr5 22824892 22825042 -129712217 - L1Md_F3 LINE L1 -1 6583 6441 5 759 30035 72 12 27 chr5 22825042 22826019 -129711240 - L1_Mus2 LINE L1 -595 5971 5178 5 759 945 92 21 0 chr5 22826019 22826160 -129711099 - B1_Mus1 SINE Alu 0 148 5 5 759 30035 117 24 48 chr5 22826160 22830779 -129706480 - L1_Mus2 LINE L1 -706 5177 504 5 759 534 16 0 0 chr5 22830879 22830942 -129706317 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 759 417 361 8 0 chr5 22830955 22831085 -129706174 - RSINE1 SINE B4 -33 132 2 5 759 278 362 11 0 chr5 22831227 22831321 -129705938 + RSINE1 SINE B4 38 132 -33 5 759 276 53 0 0 chr5 22831334 22831372 -129705887 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 759 477 329 52 7 chr5 22831385 22831538 -129705721 - RSINE1 SINE B4 -4 161 2 5 759 32 26 0 0 chr5 22831538 22831577 -129705682 + AT_rich Low_complexity Low_complexity 1 39 0 5 759 1600 210 68 23 chr5 22832452 22832851 -129704408 + MTD LTR MaLR 3 419 0 5 759 1041 215 9 14 chr5 22833228 22833445 -129703814 - B3 SINE B2 0 216 1 5 759 189 0 0 0 chr5 22833477 22833498 -129703761 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 5 759 1044 84 14 0 chr5 22833498 22833640 -129703619 - B1_Mm SINE Alu -2 145 2 5 759 315 321 61 44 chr5 22833661 22833775 -129703484 - RSINE1 SINE B4 -14 151 36 5 759 798 58 0 0 chr5 22833787 22833891 -129703368 + (TC)n Simple_repeat Simple_repeat 2 105 0 5 759 444 227 188 0 chr5 22833891 22834019 -129703240 - B4 SINE B4 -7 285 134 5 759 3815 78 37 15 chr5 22834152 22834696 -129702563 - L1_Mus1 LINE L1 0 6567 6012 5 759 896 143 1 7 chr5 22834696 22834852 -129702407 - L1_Mm LINE L1 -787 5099 4942 5 759 220 268 0 18 chr5 22845388 22845445 -129691814 + CT-rich Low_complexity Low_complexity 3 58 0 5 759 846 320 35 27 chr5 22845515 22845881 -129691378 + RodERV21-int LTR ERV1 4425 4793 -198 5 759 645 14 0 0 chr5 22846060 22846134 -129691125 + (TC)n Simple_repeat Simple_repeat 2 75 0 5 759 2438 48 6 0 chr5 22846150 22846480 -129690779 - MT-int LTR MaLR -74 1024 693 5 759 9579 119 52 75 chr5 22846480 22847746 -129689513 - L1_Mus3 LINE L1 -140 6498 5237 5 759 786 89 0 54 chr5 22847746 22847876 -129689383 + B1_Mm SINE Alu 25 147 0 5 759 9579 119 52 75 chr5 22847876 22848005 -129689254 - L1_Mus3 LINE L1 -140 5236 5107 5 759 1335 105 0 16 chr5 22848005 22848199 -129689060 - B2_Mm2 SINE B2 -4 191 1 5 759 9579 170 113 178 chr5 22848199 22848671 -129688588 - L1_Mus3 LINE L1 -780 5106 4557 5 759 2201 75 34 7 chr5 22848671 22849049 -129688210 - RLTR1B LTR ERV1 0 512 58 5 759 9579 170 113 178 chr5 22849049 22850403 -129686856 - L1_Mus3 LINE L1 -780 4556 2974 5 759 2620 307 7 5 chr5 22850416 22851266 -129685993 - MYSERV6-int LTR ERVK -7656 1303 452 5 759 21 36 0 0 chr5 22851448 22851476 -129685783 + AT_rich Low_complexity Low_complexity 1 28 0 5 759 2390 118 57 5 chr5 22852891 22853292 -129683967 - BGLII_Mus LTR ERVK 0 422 1 5 759 833 222 90 79 chr5 22853347 22853626 -129683633 + B4A SINE B4 11 292 0 5 759 1352 172 68 43 chr5 22853666 22853988 -129683271 + L1_Mur3 LINE L1 297 626 -7102 5 759 560 36 132 0 chr5 22854010 22854093 -129683166 + B2_Mm2 SINE B2 2 95 -100 5 759 282 63 151 14 chr5 22854092 22854163 -129683096 + B1_Mus2 SINE Alu 72 150 0 5 759 5497 136 35 10 chr5 22854186 22855149 -129682110 + L1_Mur3 LINE L1 3336 4322 -1558 5 759 284 236 35 26 chr5 22855151 22855264 -129681995 + Lx7 LINE L1 7583 7696 0 5 759 329 238 201 60 chr5 22855314 22855663 -129681596 + L1ME2 LINE L1 5633 6030 -134 5 759 751 223 36 41 chr5 22855668 22855864 -129681395 + B3A SINE B2 2 196 -2 5 759 922 229 19 5 chr5 22855890 22856096 -129681163 + B3 SINE B2 1 209 -7 5 759 377 333 27 27 chr5 22856100 22856248 -129681011 + B4 SINE B4 58 205 -87 5 759 673 138 0 57 chr5 22856132 22856255 -129681004 + B1_Mur4 SINE Alu 9 124 -26 5 759 2942 71 46 0 chr5 22856260 22856653 -129680606 + RLTR10A LTR ERVK 1 411 0 5 759 678 122 0 26 chr5 22856655 22856804 -129680455 + RLTR10-int LTR ERVK 22 130 -6412 5 759 1331 17 11 22 chr5 22856804 22856984 -129680275 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 5 759 3748 62 80 10 chr5 22857005 22857492 -129679767 + RLTR10-int LTR ERVK 5007 5527 -1015 5 759 4952 96 25 14 chr5 22857496 22858237 -129679022 + RLTR10-int LTR ERVK 1288 1986 -1 5 759 2913 77 48 0 chr5 22858237 22858629 -129678630 + RLTR10A LTR ERVK 1 411 0 5 759 229 331 55 24 chr5 22858667 22858794 -129678465 + L1ME2 LINE L1 6033 6163 -16 5 759 829 137 27 0 chr5 22859316 22859462 -129677797 - B2_Mm2 SINE B2 -7 188 39 5 759 794 164 12 19 chr5 22859525 22859687 -129677572 + URR1B DNA MER1_type 65 225 0 5 759 717 225 102 0 chr5 22859905 22860092 -129677167 + B3 SINE B2 5 210 -6 5 759 2514 185 78 133 chr5 22860756 22861585 -129675674 + L1Md_F LINE L1 220 1120 -5496 5 759 1246 48 0 0 chr5 22861585 22861732 -129675527 + B1_Mm SINE Alu 1 147 0 5 759 9846 115 8 13 chr5 22861732 22863359 -129673900 + L1Md_F LINE L1 1112 2682 -3201 5 759 1956 151 0 0 chr5 22863363 22863635 -129673624 + MMETn-int LTR ERVK 4422 4693 -2713 5 759 10328 125 29 24 chr5 22863630 22865376 -129671883 + MMETn-int LTR ERVK 3219 4814 -30 5 759 207 0 0 0 chr5 22865376 22865399 -129671860 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 759 10328 118 27 22 chr5 22865399 22865414 -129671845 + MMETn-int LTR ERVK 4815 4836 -8 5 759 2062 104 12 51 chr5 22865421 22865756 -129671503 + RLTRETN_Mm LTR ERVK 1 322 0 5 759 458 189 9 28 chr5 22865756 22865857 -129671402 + B3 SINE B2 14 113 -103 5 759 280 346 0 0 chr5 22865991 22866072 -129671187 - RSINE1 SINE B4 -39 126 46 5 759 6325 80 52 6 chr5 22866094 22867774 -129669485 + L1VL2 LINE L1 61 1826 -1789 5 759 304 292 0 0 chr5 22867918 22868007 -129669252 - PB1D10 SINE Alu -2 115 27 5 759 1595 143 212 26 chr5 22868333 22868678 -129668581 + RLTR9E LTR ERVK 1 409 0 5 759 23 0 0 0 chr5 22869016 22869039 -129668220 + AT_rich Low_complexity Low_complexity 1 23 0 5 759 30 77 0 0 chr5 22869152 22869217 -129668042 + AT_rich Low_complexity Low_complexity 1 65 0 5 759 23 54 0 0 chr5 22869375 22869412 -129667847 + AT_rich Low_complexity Low_complexity 1 37 0 5 759 201 139 0 0 chr5 22869540 22869583 -129667676 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 5 759 27 0 0 0 chr5 22870835 22870862 -129666397 + AT_rich Low_complexity Low_complexity 1 27 0 5 759 210 158 0 0 chr5 22870969 22871007 -129666252 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 5 759 2897 74 25 2 chr5 22871009 22871417 -129665842 - LTRIS2 LTR ERV1 -79 485 69 5 759 717 226 138 0 chr5 22871417 22871634 -129665625 - RLTR1B-int LTR ERV1 -26 5037 4791 5 759 1213 264 100 26 chr5 22871750 22872139 -129665120 - RLTR1B-int LTR ERV1 -941 4122 3705 5 759 9443 117 103 51 chr5 22872126 22874371 -129662888 - RLTR1B-int LTR ERV1 -744 2555 760 5 759 4093 151 76 19 chr5 22874362 22875083 -129662176 - RMER16-int LTR ERVK -3962 1444 683 5 759 952 160 57 11 chr5 22875068 22875245 -129662014 - RMER16-int LTR ERVK -5076 330 146 5 759 656 124 57 13 chr5 22875602 22875768 -129661491 - RLTR1B-int LTR ERV1 -3011 288 63 5 759 259 207 24 105 chr5 22875797 22875921 -129661338 - RLTR1B-int LTR ERV1 -3584 114 1 5 759 1266 42 0 6 chr5 22875921 22876090 -129661169 - LTRIS2 LTR ERV1 0 564 397 5 759 3053 232 26 21 chr5 22876128 22876266 -129660993 - Lx5 LINE L1 -90 6960 6830 5 759 2683 45 32 26 chr5 22876266 22876610 -129660649 + ORR1A1 LTR MaLR 1 346 0 5 759 3053 232 26 21 chr5 22876610 22877131 -129660128 - Lx5 LINE L1 -221 6829 6298 5 759 6595 174 58 6 chr5 22877083 22878402 -129658857 + L1MC3 LINE L1 4437 5859 -1926 5 759 1682 21 0 0 chr5 22878974 22879161 -129658098 + B2_Mm1a SINE B2 2 188 -5 5 759 846 0 0 0 chr5 22879632 22879726 -129657533 + (GTGTG)n Simple_repeat Simple_repeat 1 94 0 5 759 396 0 0 0 chr5 22879726 22879770 -129657489 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 759 817 257 51 77 chr5 22880420 22880732 -129656527 + MTE2a LTR MaLR 17 320 -59 5 759 1090 89 14 0 chr5 22880839 22880985 -129656274 - B1_Mus1 SINE Alu 0 148 1 5 759 368 129 188 0 chr5 22881018 22881103 -129656156 + Lx4A LINE L1 6958 7058 0 5 759 485 282 89 111 chr5 22881217 22881360 -129655899 + RLTR12B LTR ERVK 119 262 -266 5 759 276 111 0 0 chr5 22881360 22881405 -129655854 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 5 759 485 282 89 111 chr5 22881405 22881532 -129655727 + RLTR12B LTR ERVK 263 383 -145 5 759 1950 221 68 68 chr5 22881605 22882296 -129654963 + RMER17B LTR ERVK 268 958 0 5 759 3761 109 19 0 chr5 22883616 22884131 -129653128 + L1VL1 LINE L1 207 731 -5691 5 759 672 64 0 11 chr5 22884120 22884215 -129653044 + L1_Mm LINE L1 4290 4383 -1500 5 759 9074 79 0 2 chr5 22884198 22885380 -129651879 + L1_Mm LINE L1 4632 5810 -73 5 759 2297 127 36 45 chr5 22885382 22885853 -129651406 + IAPLTR2_Mm LTR ERVK 1 467 -8 5 759 5140 66 9 3 chr5 22885861 22886511 -129650748 + L1Md_F2 LINE L1 5807 6460 -122 5 759 1679 82 0 0 chr5 22886509 22886740 -129650519 + MusHAL1 LINE L1 1177 1407 -1305 5 759 7778 89 9 7 chr5 22886739 22888024 -129649235 + L1_Mus4 LINE L1 5332 6623 -13 5 759 1716 87 67 30 chr5 22888024 22888321 -129648938 - RLTR9A LTR ERVK 0 368 61 5 759 261 0 0 0 chr5 22888429 22888458 -129648801 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 759 495 0 0 0 chr5 22888458 22888512 -129648747 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 759 347 272 120 104 chr5 22888821 22889071 -129648188 + MLT1B LTR MaLR 77 330 -60 5 759 358 286 25 0 chr5 22889074 22889193 -129648066 - PB1 SINE Alu -5 122 1 5 759 500 76 0 25 chr5 22889560 22889641 -129647618 + L1Md_F2 LINE L1 6499 6577 -5 5 759 22 0 0 0 chr5 22889656 22889678 -129647581 + AT_rich Low_complexity Low_complexity 1 22 0 6 759 219 282 64 0 chr5 22890935 22891013 -129646246 + B3A SINE B2 16 98 -100 6 759 823 204 89 30 chr5 22891053 22891255 -129646004 + B3 SINE B2 1 214 -2 6 759 703 229 39 22 chr5 22891272 22891451 -129645808 - B3 SINE B2 0 216 35 6 759 424 211 45 75 chr5 22891918 22892051 -129645208 + ID_B1 SINE B4 86 214 -10 6 759 756 33 0 0 chr5 22892051 22892142 -129645117 + (TAAA)n Simple_repeat Simple_repeat 2 92 0 6 759 352 150 12 12 chr5 22892144 22892225 -129645034 + G-rich Low_complexity Low_complexity 6 86 0 6 759 228 286 0 0 chr5 22894058 22894107 -129643152 + polypyrimidine Low_complexity Low_complexity 1 49 0 6 759 296 292 58 105 chr5 22894162 22894334 -129642925 - LTR79 LTR ERVL -342 185 22 6 759 268 294 117 7 chr5 22894493 22894647 -129642612 + MIR SINE MIR 66 236 -26 6 759 2340 136 40 10 chr5 22894771 22895172 -129642087 - MTC LTR MaLR 0 421 9 6 759 720 0 0 0 chr5 22895400 22895480 -129641779 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 759 196 320 0 49 chr5 22895578 22895660 -129641599 + L2b LINE L2 3289 3366 -9 6 759 543 263 201 17 chr5 22896228 22896572 -129640687 - L1MA6 LINE L1 -19 6281 5875 6 759 483 221 23 97 chr5 22896566 22896741 -129640518 - L1MA6 LINE L1 -528 5763 5602 6 759 470 176 130 0 chr5 22896765 22896873 -129640386 - B1F SINE Alu 0 149 28 6 759 447 269 69 0 chr5 22896771 22896901 -129640358 - ID_B1 SINE B4 -6 218 80 6 759 475 238 178 18 chr5 22896907 22897070 -129640189 - L1MA6 LINE L1 -712 5588 5400 6 759 251 306 72 8 chr5 22897622 22897747 -129639512 - B3 SINE B2 -13 203 71 6 759 1472 254 40 0 chr5 22897808 22898158 -129639101 - Lx8 LINE L1 -488 6985 6622 6 759 1906 128 13 19 chr5 22898329 22898639 -129638620 + ORR1B2 LTR MaLR 1 308 -59 6 759 1198 54 0 20 chr5 22898648 22898663 -129638596 - B1_Mm SINE Alu 0 147 135 6 759 237 83 0 0 chr5 22898663 22898699 -129638560 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 759 1198 54 0 20 chr5 22898699 22898833 -129638426 - B1_Mm SINE Alu -13 134 1 6 759 370 91 377 0 chr5 22898862 22898939 -129638320 + B2_Mm2 SINE B2 2 107 -88 6 759 327 161 0 0 chr5 22899010 22899066 -129638193 + ORR1B2 LTR MaLR 312 367 0 6 759 299 242 30 10 chr5 22899066 22899165 -129638094 + MTEb LTR MaLR 279 379 0 6 759 228 281 78 17 chr5 22899261 22899377 -129637882 + L1MB8 LINE L1 6050 6172 -6 6 759 350 313 38 0 chr5 22899383 22899514 -129637745 - ID_B1 SINE B4 -20 204 69 6 759 456 312 25 0 chr5 22899670 22899830 -129637429 - B4A SINE B4 -4 288 125 6 759 496 268 31 16 chr5 22899987 22900116 -129637143 + B1F SINE Alu 19 149 0 6 759 534 264 143 6 chr5 22900672 22900847 -129636412 - ID_B1 SINE B4 0 224 26 6 759 1217 41 7 0 chr5 22901277 22901423 -129635836 - B1_Mus2 SINE Alu 0 147 1 6 759 1466 55 16 0 chr5 22903246 22903428 -129633831 + B2_Mm2 SINE B2 1 185 -10 6 759 997 213 48 0 chr5 22903457 22903645 -129633614 - B3 SINE B2 -14 202 6 6 759 264 299 51 13 chr5 22903645 22903723 -129633536 - B1F SINE Alu -66 83 3 6 759 834 100 203 20 chr5 22903723 22903876 -129633383 + B2_Mm2 SINE B2 1 181 -14 6 759 269 312 0 0 chr5 22903908 22903985 -129633274 - PB1D10 SINE Alu -14 103 27 6 759 1461 77 6 0 chr5 22904716 22904899 -129632360 + B2_Mm1t SINE B2 1 184 -9 6 759 570 50 480 0 chr5 22904932 22905032 -129632227 + B1_Mus1 SINE Alu 1 148 0 6 759 189 107 0 0 chr5 22905033 22905061 -129632198 + (A)n Simple_repeat Simple_repeat 1 28 0 6 759 22 35 0 0 chr5 22905062 22905091 -129632168 + AT_rich Low_complexity Low_complexity 1 29 0 6 759 553 217 39 8 chr5 22905221 22905351 -129631908 - RMER10A LTR ERVL -305 137 4 6 759 450 289 20 18 chr5 22905363 22905608 -129631651 + MTE2a LTR MaLR 58 337 -42 6 759 3913 179 43 15 chr5 22905608 22906493 -129630766 - RMER1B Other Other -23 1043 101 6 759 230 239 60 0 chr5 22906499 22906566 -129630693 + MTE2a LTR MaLR 307 377 -2 6 759 1107 222 160 22 chr5 22906778 22907146 -129630113 + MTD LTR MaLR 1 419 0 6 759 372 123 0 0 chr5 22908134 22908207 -129629052 + (G)n Simple_repeat Simple_repeat 1 73 0 6 759 189 0 0 0 chr5 22908681 22908702 -129628557 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 6 759 252 0 0 0 chr5 22908736 22908764 -129628495 + (TA)n Simple_repeat Simple_repeat 1 28 0 6 759 439 292 70 37 chr5 22908912 22909211 -129628048 - RMER10A LTR ERVL -12 430 122 6 759 288 53 0 0 chr5 22910056 22910094 -129627165 + (T)n Simple_repeat Simple_repeat 1 38 0 6 759 263 317 9 12 chr5 22910160 22910266 -129626993 - PB1D10 SINE Alu -18 131 24 6 759 516 72 0 0 chr5 22910288 22910357 -129626902 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 759 289 316 154 0 chr5 22910396 22910513 -129626746 + ID_B1 SINE B4 79 213 -11 6 759 415 223 65 46 chr5 22910537 22910645 -129626614 + B1_Mur2 SINE Alu 1 110 -39 6 759 532 286 86 0 chr5 22910654 22910829 -129626430 + MTEb LTR MaLR 190 379 0 6 759 1156 75 0 0 chr5 22910842 22910988 -129626271 + B1_Mus1 SINE Alu 2 147 -1 6 759 4150 265 131 25 chr5 22911002 22912283 -129624976 + MTEb-int LTR MaLR 1 1403 -177 6 759 461 206 102 70 chr5 22912283 22912440 -129624819 - RSINE1 SINE B4 0 165 4 6 759 4150 265 131 25 chr5 22912440 22912584 -129624675 + MTEb-int LTR MaLR 1404 1577 -3 6 759 526 244 83 0 chr5 22912596 22912752 -129624507 + MTEb LTR MaLR 18 186 -193 6 759 230 282 103 23 chr5 22912818 22912905 -129624354 + MT2B LTR ERVL 183 276 -325 6 759 485 211 73 46 chr5 22912830 22912939 -129624320 + B1_Mur1 SINE Alu 38 149 0 6 759 844 204 115 6 chr5 22913006 22913188 -129624071 + B3 SINE B2 1 202 -14 6 759 539 298 25 65 chr5 22913205 22913406 -129623853 - B3A SINE B2 -5 193 1 6 759 346 232 165 19 chr5 22914393 22914551 -129622708 - Lx8 LINE L1 -1 7472 7292 6 759 201 133 0 0 chr5 22914578 22914608 -129622651 + (TCCA)n Simple_repeat Simple_repeat 3 32 0 6 759 495 0 0 0 chr5 22914626 22914681 -129622578 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 759 398 261 35 9 chr5 22914851 22914967 -129622292 - PB1D7 SINE Alu 0 120 2 6 759 180 0 0 0 chr5 22915313 22915333 -129621926 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 759 1216 61 110 0 chr5 22915333 22915497 -129621762 - B2_Mm1t SINE B2 -11 182 1 6 759 298 260 7 158 chr5 22916648 22916794 -129620465 + PB1 SINE Alu 1 124 -3 6 759 296 302 29 17 chr5 22916851 22916953 -129620306 + B1F1 SINE Alu 15 112 -5 6 759 371 73 0 0 chr5 22917091 22917146 -129620113 + B1_Mus2 SINE Alu 71 125 -22 6 759 860 232 42 5 chr5 22917197 22917388 -129619871 - B3A SINE B2 0 198 1 6 759 226 313 104 0 chr5 22917560 22917675 -129619584 - PB1 SINE Alu 0 127 1 6 759 303 291 0 11 chr5 22918462 22918549 -129618710 - MLT1F2 LTR MaLR -77 483 398 6 759 360 0 0 0 chr5 22919879 22919919 -129617340 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 759 184 243 66 26 chr5 22920583 22920659 -129616600 + MIR SINE MIR 174 252 -10 6 759 357 248 47 9 chr5 22921142 22921248 -129616011 + RSINE1 SINE B4 14 123 -42 6 759 311 288 113 60 chr5 22924814 22924947 -129612312 + ID_B1 SINE B4 85 224 0 6 759 342 161 64 11 chr5 22925594 22925685 -129611574 + B1F2 SINE Alu 49 148 -1 6 759 216 295 0 0 chr5 22925681 22925742 -129611517 - ID4 SINE ID -21 62 2 6 759 471 212 50 0 chr5 22926758 22926857 -129610402 - B1_Mur1 SINE Alu -21 128 25 6 759 334 176 81 12 chr5 22927348 22927434 -129609825 - PB1D10 SINE Alu -1 116 25 6 759 425 300 18 53 chr5 22927368 22927537 -129609722 - ID_B1 SINE B4 -53 171 9 6 759 591 53 0 0 chr5 22928354 22928429 -129608830 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 759 1092 29 14 35 chr5 22928429 22928573 -129608686 - B1_Mm SINE Alu -6 141 1 6 759 421 273 36 9 chr5 22929124 22929235 -129608024 + PB1D10 SINE Alu 1 114 -3 6 759 21 36 0 0 chr5 22929301 22929329 -129607930 + AT_rich Low_complexity Low_complexity 1 28 0 6 759 1133 59 0 7 chr5 22929402 22929556 -129607703 + B2_Mm2 SINE B2 1 153 -42 6 759 266 26 53 0 chr5 22929556 22929594 -129607665 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 6 759 332 167 26 53 chr5 22929715 22929791 -129607468 + B1_Mur1 SINE Alu 68 141 -8 6 759 580 224 52 75 chr5 22929796 22929970 -129607289 + B3A SINE B2 2 171 -27 6 759 433 245 41 0 chr5 22930122 22930220 -129607039 + PB1D9 SINE Alu 5 106 -14 6 759 266 0 29 0 chr5 22930222 22930256 -129607003 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 6 759 473 208 40 0 chr5 22930285 22930386 -129606873 + PB1D9 SINE Alu 15 119 -1 6 759 372 261 48 32 chr5 22930456 22930562 -129606697 - B1_Mur2 SINE Alu -8 112 2 6 759 859 256 20 5 chr5 22930569 22930773 -129606486 - B3 SINE B2 -8 208 2 6 759 1185 76 0 0 chr5 22931055 22931200 -129606059 - B1_Mus2 SINE Alu -2 145 1 6 759 729 167 8 0 chr5 22931616 22931742 -129605517 + B1_Mm SINE Alu 9 135 -12 6 759 322 284 47 47 chr5 22932043 22932191 -129605068 - B1F SINE Alu -1 148 1 6 759 927 48 0 8 chr5 22932635 22932760 -129604499 + B1_Mus1 SINE Alu 1 124 -24 6 759 465 197 43 28 chr5 22932760 22932776 -129604483 + ID_B1 SINE B4 82 224 0 6 759 198 0 0 0 chr5 22932975 22932997 -129604262 + (TA)n Simple_repeat Simple_repeat 1 22 0 6 759 698 247 25 0 chr5 22933130 22933292 -129603967 - B3 SINE B2 -48 168 3 6 759 215 297 31 15 chr5 22933382 22933447 -129603812 + ID4 SINE ID 15 80 -3 6 759 2107 155 94 30 chr5 22934116 22934607 -129602652 - RLTR28 LTR ERVL -2 522 1 7 759 464 286 137 39 chr5 22934759 22935014 -129602245 + B4 SINE B4 10 289 -3 7 759 1486 58 37 0 chr5 22935069 22935257 -129602002 + B2_Mm2 SINE B2 1 195 0 7 759 250 206 237 0 chr5 22935908 22936005 -129601254 - ID_B1 SINE B4 0 224 105 7 759 377 284 39 10 chr5 22936199 22936302 -129600957 - PB1D10 SINE Alu -6 111 6 7 760 324 182 68 39 chr5 22937918 22938004 -129599255 + PB1D10 SINE Alu 21 111 -38 7 760 205 238 0 0 chr5 22939545 22939587 -129597672 + (CGG)n Simple_repeat Simple_repeat 2 43 0 7 760 417 39 0 0 chr5 22940222 22940273 -129596986 + (CCG)n Simple_repeat Simple_repeat 2 52 0 7 760 21 71 0 0 chr5 22943370 22943412 -129593847 + AT_rich Low_complexity Low_complexity 1 42 0 7 760 25 65 0 0 chr5 22944240 22944286 -129592973 + AT_rich Low_complexity Low_complexity 1 46 0 7 760 21 0 0 0 chr5 22944622 22944643 -129592616 + AT_rich Low_complexity Low_complexity 1 21 0 7 760 818 261 43 0 chr5 22945082 22945289 -129591970 - ID_B1 SINE B4 -8 216 1 7 760 387 0 0 0 chr5 22945383 22945426 -129591833 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 760 21 0 0 0 chr5 22945990 22946011 -129591248 + AT_rich Low_complexity Low_complexity 1 21 0 7 760 708 74 0 0 chr5 22946219 22946314 -129590945 + (TTTTC)n Simple_repeat Simple_repeat 3 97 0 7 760 404 157 14 0 chr5 22946314 22946384 -129590875 - B1_Mur3 SINE Alu -12 137 67 7 760 27 73 0 0 chr5 22946453 22946508 -129590751 + AT_rich Low_complexity Low_complexity 1 55 0 7 760 566 270 29 14 chr5 22946515 22946654 -129590605 - B1_Mur2 SINE Alu -8 141 1 7 760 322 270 142 8 chr5 22946663 22946790 -129590469 - B1F2 SINE Alu -1 148 5 7 760 252 172 21 62 chr5 22946973 22947045 -129590214 - Lx7 LINE L1 0 7696 7637 7 760 197 140 0 20 chr5 22948261 22948282 -129588977 + A-rich Low_complexity Low_complexity 2 21 0 7 760 1048 71 50 0 chr5 22948282 22948422 -129588837 + B1_Mus2 SINE Alu 1 147 0 7 760 197 140 0 20 chr5 22948422 22948451 -129588808 + A-rich Low_complexity Low_complexity 22 50 0 7 760 280 250 138 0 chr5 22948487 22948567 -129588692 - B1F2 SINE Alu -52 97 7 7 760 447 68 0 0 chr5 22948584 22948643 -129588616 + (CCCCCT)n Simple_repeat Simple_repeat 6 64 0 7 760 255 125 0 0 chr5 22948645 22948685 -129588574 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 7 760 638 259 177 5 chr5 22948686 22948872 -129588387 - ID_B1 SINE B4 -5 219 2 7 760 22 0 0 0 chr5 22949028 22949050 -129588209 + AT_rich Low_complexity Low_complexity 1 22 0 7 760 562 168 168 0 chr5 22949221 22949340 -129587919 + B1_Mur2 SINE Alu 4 142 -7 7 760 237 98 0 0 chr5 22950177 22950218 -129587041 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 760 543 287 49 0 chr5 22950227 22950370 -129586889 - B3A SINE B2 -48 150 1 7 760 511 274 48 21 chr5 22950601 22950807 -129586452 - B3A SINE B2 -3 213 2 7 760 940 264 118 88 chr5 22950812 22951277 -129585982 - L1MD2 LINE L1 0 6359 5881 7 760 419 324 29 0 chr5 22951472 22951574 -129585685 - PB1D7 SINE Alu -13 107 3 7 760 254 294 9 121 chr5 22951477 22951593 -129585666 - MT2B2 LTR ERVL -329 255 153 7 760 372 153 0 53 chr5 22951596 22951672 -129585587 - L1MD2 LINE L1 -482 5877 5806 7 760 539 296 116 0 chr5 22951768 22951957 -129585302 - ID_B1 SINE B4 -12 212 2 7 760 254 278 0 0 chr5 22952666 22952720 -129584539 - ID4 SINE ID -19 64 11 7 760 472 308 17 25 chr5 22952741 22952874 -129584385 - B1F SINE Alu -8 141 10 7 760 522 31 0 0 chr5 22952878 22952942 -129584317 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 760 437 273 36 0 chr5 22952977 22953087 -129584172 - PB1D7 SINE Alu -1 119 6 7 760 338 292 97 30 chr5 22954181 22954341 -129582918 - MIRb SINE MIR -53 215 36 7 760 756 174 0 40 chr5 22955069 22955195 -129582064 - B1_Mur1 SINE Alu -28 121 1 7 760 487 303 56 50 chr5 22955195 22955222 -129582037 - B4 SINE B4 -72 192 60 7 760 1311 90 11 0 chr5 22955602 22955790 -129581469 + B2_Mm1a SINE B2 2 191 -2 7 760 1591 36 0 10 chr5 22956536 22956731 -129580528 - B2_Mm1a SINE B2 0 193 1 7 760 22 0 0 0 chr5 22956837 22956859 -129580400 + AT_rich Low_complexity Low_complexity 1 22 0 7 760 294 258 111 20 chr5 22956944 22957043 -129580216 + PB1D10 SINE Alu 10 117 0 7 760 2340 79 43 0 chr5 22957601 22957930 -129579329 + Lx2A1 LINE L1 6663 7005 -3 7 760 1031 73 93 0 chr5 22957948 22958099 -129579160 + L1Md_F2 LINE L1 6407 6571 -11 7 760 464 228 123 8 chr5 22958189 22958317 -129578942 + B1F2 SINE Alu 1 149 0 7 760 344 314 127 21 chr5 22958340 22958529 -129578730 - B3 SINE B2 -7 209 1 7 760 1209 41 0 0 chr5 22959007 22959152 -129578107 + B1_Mus2 SINE Alu 2 146 -1 7 760 294 29 0 0 chr5 22959152 22959187 -129578072 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 760 21 71 0 0 chr5 22959298 22959340 -129577919 + AT_rich Low_complexity Low_complexity 1 42 0 7 760 1196 55 0 0 chr5 22959340 22959486 -129577773 + B1_Mus2 SINE Alu 2 147 0 7 760 747 180 92 12 chr5 22959503 22959666 -129577593 - B2_Mm2 SINE B2 -18 177 2 7 760 1015 94 47 19 chr5 22960335 22960514 -129576745 + B2_Mm2 SINE B2 11 190 -5 7 760 743 207 0 28 chr5 22960618 22960762 -129576497 - B1_Mus1 SINE Alu -7 141 2 7 760 792 228 19 68 chr5 22960785 22960992 -129576267 - B3A SINE B2 0 198 2 7 760 483 219 10 10 chr5 22961382 22961479 -129575780 + B3A SINE B2 2 98 -100 7 760 24 67 0 0 chr5 22961497 22961542 -129575717 + AT_rich Low_complexity Low_complexity 1 45 0 7 760 477 0 0 0 chr5 22961707 22961760 -129575499 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 7 760 890 90 0 0 chr5 22961764 22961886 -129575373 - B2_Mm2 SINE B2 -73 122 1 7 760 256 116 86 14 chr5 22961977 22962047 -129575212 + (CTTTG)n Simple_repeat Simple_repeat 4 78 0 7 760 1242 41 0 0 chr5 22962222 22962369 -129574890 - B1_Mm SINE Alu 0 147 1 7 760 282 371 0 20 chr5 22962431 22962530 -129574729 - RSINE1 SINE B4 -2 163 67 7 760 322 286 0 0 chr5 22962529 22962613 -129574646 + B3A SINE B2 21 104 -94 7 760 711 255 58 19 chr5 22962807 22963015 -129574244 + B3 SINE B2 1 216 0 7 760 200 182 0 0 chr5 22963036 22963069 -129574190 - MIR SINE MIR -64 144 112 7 760 468 263 170 14 chr5 22963895 22964107 -129573152 - L1MB4 LINE L1 -52 6128 5884 7 760 482 294 53 44 chr5 22964107 22964313 -129572946 - B3A SINE B2 -7 209 2 7 760 506 142 65 24 chr5 22964350 22964473 -129572786 - Lx9 LINE L1 0 7644 7517 7 760 2565 156 80 10 chr5 22964487 22964997 -129572262 - Lx9 LINE L1 -245 7399 6854 7 760 325 296 23 0 chr5 22965044 22965132 -129572127 - RSINE1 SINE B4 0 165 76 7 760 213 244 0 0 chr5 22965608 22965649 -129571610 - B1_Mus2 SINE Alu -75 72 32 7 760 243 361 43 65 chr5 22965718 22965857 -129571402 + RSINE1 SINE B4 28 163 -2 7 760 1602 37 0 0 chr5 22965897 22966086 -129571173 - B2_Mm1t SINE B2 -3 190 2 7 760 1107 48 7 7 chr5 22966136 22966282 -129570977 + B1_Mus2 SINE Alu 2 147 0 7 760 517 329 26 7 chr5 22966311 22966464 -129570795 + RSINE1 SINE B4 10 165 0 7 760 571 237 44 0 chr5 22966839 22966953 -129570306 + ID_B1 SINE B4 85 203 -21 7 760 523 259 58 22 chr5 22966953 22966974 -129570285 + B1F SINE Alu 4 143 -6 7 760 204 97 0 0 chr5 22967005 22967036 -129570223 + (T)n Simple_repeat Simple_repeat 1 31 0 7 760 1098 68 0 14 chr5 22967036 22967184 -129570075 - B1_Mus2 SINE Alu 0 147 2 7 760 214 250 62 15 chr5 22967184 22967249 -129570010 + PB1D10 SINE Alu 18 85 -32 7 760 671 179 48 29 chr5 22967216 22967383 -129569876 + B3 SINE B2 7 190 -5 7 760 386 237 17 26 chr5 22968441 22968558 -129568701 - PB1D10 SINE Alu 0 117 2 7 760 243 304 86 104 chr5 22969244 22969277 -129567982 - B3 SINE B2 0 216 189 7 760 491 192 192 0 chr5 22969277 22969402 -129567857 - B1_Mur3 SINE Alu 0 149 1 7 760 361 302 138 42 chr5 22969402 22969588 -129567671 - B3A SINE B2 -1 197 1 7 760 260 221 13 0 chr5 22969633 22969710 -129567549 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 7 760 218 303 39 26 chr5 22969713 22969791 -129567468 - MIRb SINE MIR -69 199 121 7 760 21 82 0 0 chr5 22969938 22969987 -129567272 + AT_rich Low_complexity Low_complexity 1 49 0 7 760 392 270 9 91 chr5 22970038 22970148 -129567111 - RSINE1 SINE B4 -57 108 8 7 760 1106 54 0 13 chr5 22970808 22970957 -129566302 - B1_Mm SINE Alu 0 147 1 7 760 557 227 43 57 chr5 22971116 22971256 -129566003 + B3 SINE B2 2 139 -77 7 760 555 53 0 0 chr5 22971276 22971351 -129565908 + (CA)n Simple_repeat Simple_repeat 1 75 0 7 760 414 114 296 0 chr5 22971599 22971687 -129565572 - B2_Mm2 SINE B2 -80 115 2 7 760 323 257 155 54 chr5 22971720 22971868 -129565391 + RSINE1 SINE B4 3 165 0 7 760 294 162 13 26 chr5 22971934 22971996 -129565263 + CT-rich Low_complexity Low_complexity 16 76 0 7 760 1433 84 16 0 chr5 22971996 22972186 -129565073 - B2_Mm2 SINE B2 0 195 3 7 760 294 162 13 26 chr5 22972186 22972199 -129565060 + polypyrimidine Low_complexity Low_complexity 2 15 0 7 760 396 292 60 40 chr5 22973085 22973235 -129564024 + ID_B1 SINE B4 69 221 -3 8 760 254 286 0 67 chr5 22973321 22973396 -129563863 + ID4_ SINE ID 1 70 -13 8 760 180 0 0 0 chr5 22973521 22973541 -129563718 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 760 686 183 152 0 chr5 22974170 22974334 -129562925 + RMER1C Other Other 1153 1341 -1 8 760 251 303 52 46 chr5 22974491 22974664 -129562595 - L1MD1 LINE L1 -56 6186 6013 8 760 262 293 86 0 chr5 22974711 22974851 -129562408 - L1MD1 LINE L1 -476 5883 5732 8 760 405 250 110 0 chr5 22974954 22975054 -129562205 + PB1D9 SINE Alu 9 119 -1 8 760 639 0 0 0 chr5 22975166 22975237 -129562022 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 8 760 1210 41 0 0 chr5 22975423 22975568 -129561691 + B1_Mus1 SINE Alu 4 148 0 8 760 275 320 64 32 chr5 22976240 22976385 -129560874 - B1F SINE Alu 0 149 1 8 760 237 130 0 55 chr5 22976646 22976719 -129560540 + CT-rich Low_complexity Low_complexity 3 71 0 8 760 564 152 10 10 chr5 22976748 22976848 -129560411 - B1F2 SINE Alu -10 139 40 8 760 245 271 0 0 chr5 22976949 22976997 -129560262 + PB1D9 SINE Alu 6 53 -67 8 760 299 267 47 0 chr5 22976982 22977068 -129560191 + MT2B LTR ERVL 153 242 -359 8 760 280 255 158 11 chr5 22977107 22977202 -129560057 + PB1D7 SINE Alu 9 117 -3 8 760 1085 181 14 38 chr5 22977669 22977881 -129559378 - B3 SINE B2 -9 207 1 8 760 244 250 17 0 chr5 22978311 22978371 -129558888 + CT-rich Low_complexity Low_complexity 2 62 0 8 760 693 148 39 15 chr5 22978413 22978543 -129558716 - B1_Mur3 SINE Alu 0 149 17 8 760 383 255 25 69 chr5 22978420 22978580 -129558679 - ID_B1 SINE B4 -6 218 66 8 760 233 240 0 39 chr5 22978557 22978609 -129558650 - PB1D9 SINE Alu -70 50 1 8 760 1321 85 10 16 chr5 22979057 22979249 -129558010 + B2_Mm1t SINE B2 1 191 -2 8 760 497 224 56 0 chr5 22981590 22981697 -129555562 - PB1D9 SINE Alu 0 120 8 8 760 183 80 0 0 chr5 22981778 22981803 -129555456 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 8 760 369 138 0 0 chr5 22982969 22983049 -129554210 + (T)n Simple_repeat Simple_repeat 1 80 0 8 760 1198 55 0 0 chr5 22983049 22983195 -129554064 - B1_Mm SINE Alu 0 147 2 8 760 230 329 12 0 chr5 22983636 22983718 -129553541 - ID4_ SINE ID 0 83 1 8 760 380 231 0 43 chr5 22983725 22983848 -129553411 - PB1 SINE Alu -2 147 11 8 760 384 292 25 0 chr5 22984852 22984966 -129552293 - B1F SINE Alu 0 120 2 8 760 445 298 115 58 chr5 22985051 22985311 -129551948 - B4 SINE B4 -16 276 2 8 760 1115 68 0 0 chr5 22985780 22985926 -129551333 - B1_Mus1 SINE Alu -2 146 1 8 760 775 268 14 33 chr5 22986251 22986463 -129550796 + B3 SINE B2 1 208 -8 8 760 1712 32 41 0 chr5 22986495 22986716 -129550543 + L1Md_F3 LINE L1 6354 6583 -1 8 760 327 310 51 58 chr5 22987306 22987443 -129549816 + B1_Mur1 SINE Alu 1 136 -13 8 760 30 0 0 0 chr5 22987597 22987627 -129549632 + AT_rich Low_complexity Low_complexity 1 30 0 8 760 218 233 217 0 chr5 22987645 22987705 -129549554 - ID4 SINE ID -7 76 4 8 760 411 119 0 0 chr5 22987715 22987782 -129549477 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 760 234 284 9 97 chr5 22987993 22988007 -129549252 - YREP_Mm Unknown Unknown -1487 325 322 8 760 713 159 0 9 chr5 22988007 22988121 -129549138 + PB1D9 SINE Alu 1 113 -7 8 760 462 303 22 22 chr5 22988815 22988950 -129548309 + ID_B1 SINE B4 7 141 -83 8 760 289 271 141 0 chr5 22988952 22989037 -129548222 - ID_B1 SINE B4 -34 190 94 8 760 608 219 125 40 chr5 22989145 22989321 -129547938 - B3A SINE B2 0 198 8 8 760 221 0 0 33 chr5 22989468 22989498 -129547761 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 8 760 1156 55 7 0 chr5 22989501 22989646 -129547613 - B1_Mus2 SINE Alu 0 147 2 8 760 755 52 0 0 chr5 22989646 22989742 -129547517 - B2_Mm2 SINE B2 -99 96 1 8 760 270 270 151 43 chr5 22989752 22989938 -129547321 - B3 SINE B2 -10 206 1 8 760 579 136 68 60 chr5 22990569 22990686 -129546573 + PB1D9 SINE Alu 1 118 -2 8 760 284 211 72 84 chr5 22990896 22990979 -129546280 + ID SINE ID 3 84 -140 8 760 474 195 141 25 chr5 22991748 22991869 -129545390 - B1_Mur1 SINE Alu -9 140 6 8 760 236 297 27 0 chr5 22992775 22992849 -129544410 + B1F SINE Alu 1 76 -73 8 760 377 197 0 0 chr5 22992968 22993044 -129544215 - B3 SINE B2 -138 78 3 8 760 639 283 73 34 chr5 22993336 22993541 -129543718 - 7SK RNA RNA -118 213 1 8 760 641 150 11 188 chr5 22994583 22994710 -129542549 - B1_Mur4 SINE Alu -1 149 41 8 760 189 0 0 0 chr5 22994710 22994731 -129542528 + (CACCC)n Simple_repeat Simple_repeat 1 21 0 8 760 641 150 11 188 chr5 22994731 22994784 -129542475 - B1_Mur4 SINE Alu -110 40 1 8 760 457 285 36 96 chr5 22995218 22995385 -129541874 + RSINE1 SINE B4 9 165 0 8 760 576 167 138 62 chr5 22995879 22996039 -129541220 + B2_Mm2 SINE B2 1 172 -23 8 760 465 233 114 23 chr5 22996041 22996173 -129541086 + B1_Mus2 SINE Alu 3 146 -1 8 760 207 0 0 0 chr5 22996178 22996201 -129541058 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8 760 629 181 47 34 chr5 22996741 22996890 -129540369 + B2_Mm2 SINE B2 36 186 -9 8 760 243 287 16 7 chr5 22996966 22997040 -129540219 + MIR3 SINE MIR 93 170 -106 8 760 222 222 0 0 chr5 22997813 22997867 -129539392 + T-rich Low_complexity Low_complexity 1 54 0 8 760 332 261 103 55 chr5 22998336 22998482 -129538777 - RSINE1 SINE B4 -10 155 3 8 760 761 192 14 7 chr5 22998756 22998903 -129538356 - B1_Mur4 SINE Alu -1 149 2 8 760 292 221 15 0 chr5 22999591 22999659 -129537600 - ID4 SINE ID -13 70 2 8 760 303 280 0 0 chr5 23000816 23000891 -129536368 + ID4 SINE ID 9 83 0 1 760 462 229 106 8 chr5 23001181 23001313 -129535946 - B1F1 SINE Alu 0 149 5 2 760 881 176 52 31 chr5 23001473 23001666 -129535593 - B3A SINE B2 0 198 2 3 760 23 33 0 0 chr5 23004244 23004274 -129532985 + AT_rich Low_complexity Low_complexity 1 30 0 4 760 1147 207 66 4 chr5 23004731 23004974 -129532285 + MIR SINE MIR 2 259 -3 5 760 257 75 0 24 chr5 23005282 23005323 -129531936 + (CCG)n Simple_repeat Simple_repeat 3 42 0 6 760 204 40 0 0 chr5 23008150 23008175 -129529084 + (CCCCCG)n Simple_repeat Simple_repeat 4 28 0 7 760 249 57 0 0 chr5 23008415 23008450 -129528809 + (CCCCCT)n Simple_repeat Simple_repeat 2 36 0 8 760 224 77 0 25 chr5 23008971 23009011 -129528248 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 9 760 615 149 97 0 chr5 23011159 23011273 -129525986 - B1_Mur1 SINE Alu -23 126 2 1 760 21 0 0 0 chr5 23012121 23012142 -129525117 + AT_rich Low_complexity Low_complexity 1 21 0 1 760 1034 22 22 0 chr5 23014212 23014348 -129522911 + B1_Mm SINE Alu 9 147 0 1 760 640 269 14 0 chr5 23014380 23014521 -129522738 + B3 SINE B2 27 169 -47 1 760 874 221 21 21 chr5 23015269 23015463 -129521796 - B3 SINE B2 0 216 23 1 760 204 40 0 0 chr5 23015645 23015670 -129521589 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 1 760 1667 196 92 74 chr5 23015688 23016146 -129521113 - RMER4A LTR ERVK 0 466 1 1 760 213 182 91 0 chr5 23016868 23016923 -129520336 + PB1D9 SINE Alu 3 62 -58 1 760 344 267 0 0 chr5 23017595 23017670 -129519589 + PB1D10 SINE Alu 1 75 -42 1 760 867 215 82 16 chr5 23017690 23017884 -129519375 + B3 SINE B2 2 208 -8 1 760 372 287 8 62 chr5 23017910 23018040 -129519219 + RSINE1 SINE B4 7 129 -36 2 760 1368 67 0 0 chr5 23018157 23018337 -129518922 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 760 269 339 16 24 chr5 23018344 23018468 -129518791 - B4A SINE B4 -164 128 6 2 760 351 253 35 0 chr5 23018918 23019005 -129518254 - PB1D10 SINE Alu -27 90 1 2 760 216 261 43 14 chr5 23019869 23019939 -129517320 + GA-rich Low_complexity Low_complexity 1 72 0 2 760 1223 122 37 0 chr5 23022048 23022236 -129515023 + B2_Mm2 SINE B2 1 195 0 2 760 710 178 0 7 chr5 23022236 23022330 -129514929 + polypurine Low_complexity Low_complexity 4 97 0 2 760 1477 17 0 11 chr5 23022330 23022512 -129514747 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 760 710 178 0 7 chr5 23022512 23022677 -129514582 + polypurine Low_complexity Low_complexity 1 163 0 2 760 224 278 96 14 chr5 23022747 23022820 -129514439 + ID SINE ID 5 83 -141 2 760 415 156 289 0 chr5 23023033 23023123 -129514136 + PB1D10 SINE Alu 1 116 -1 3 760 328 278 85 31 chr5 23023133 23023263 -129513996 + B4 SINE B4 2 138 -154 3 760 1194 54 0 7 chr5 23023332 23023481 -129513778 + B1_Mus1 SINE Alu 1 148 0 3 760 454 110 50 10 chr5 23023485 23023586 -129513673 + G-rich Low_complexity Low_complexity 4 108 0 3 760 1068 8 0 0 chr5 23023586 23023707 -129513552 + (GAAAA)n Simple_repeat Simple_repeat 5 125 0 3 760 512 254 17 0 chr5 23025961 23026079 -129511180 + PB1D9 SINE Alu 1 120 0 3 760 26 50 0 0 chr5 23027112 23027152 -129510107 + AT_rich Low_complexity Low_complexity 1 40 0 3 760 1529 224 31 3 chr5 23027578 23027928 -129509331 - MTD LTR MaLR -14 405 46 3 760 759 181 223 0 chr5 23028579 23028745 -129508514 + B3 SINE B2 1 203 -13 3 760 1107 95 7 0 chr5 23028758 23028905 -129508354 - B1_Mus1 SINE Alu 0 148 1 3 760 755 104 17 0 chr5 23028935 23029050 -129508209 + B1_Mus1 SINE Alu 19 135 -13 4 760 229 26 26 26 chr5 23029053 23029092 -129508167 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 760 1215 90 25 92 chr5 23029106 23029209 -129508050 + B2_Mm2 SINE B2 1 93 -102 4 760 1340 55 77 6 chr5 23029209 23029391 -129507868 - B2_Mm2 SINE B2 0 195 1 4 760 1215 90 25 92 chr5 23029391 23029483 -129507776 + B2_Mm2 SINE B2 94 183 -12 4 760 693 36 0 0 chr5 23029484 23029568 -129507691 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 4 760 653 169 16 25 chr5 23030538 23030659 -129506600 - PB1D9 SINE Alu 0 120 1 4 760 407 220 165 29 chr5 23030879 23030982 -129506277 - B3A SINE B2 -79 119 3 4 760 415 291 31 0 chr5 23034159 23034286 -129502973 + B3 SINE B2 86 216 0 4 760 317 233 65 46 chr5 23034341 23034449 -129502810 - L1MB7 LINE L1 -110 6074 5965 4 760 674 289 42 88 chr5 23034517 23034756 -129502503 - B4A SINE B4 -8 284 57 4 760 429 198 88 10 chr5 23034984 23035086 -129502173 - B3A SINE B2 -88 110 1 5 760 277 287 89 6 chr5 23035186 23035344 -129501915 - L1MB7 LINE L1 -520 5658 5488 4 760 323 221 52 0 chr5 23035432 23035509 -129501750 - B1F SINE Alu 0 149 69 5 760 21 0 0 0 chr5 23035544 23035565 -129501694 + AT_rich Low_complexity Low_complexity 1 21 0 5 760 396 329 21 0 chr5 23035605 23035745 -129501514 + ID_B1 SINE B4 82 224 0 5 760 255 324 108 34 chr5 23035975 23036151 -129501108 + B3A SINE B2 4 192 -6 5 760 1090 79 0 0 chr5 23036330 23036469 -129500790 - B1_Mus1 SINE Alu -5 143 5 5 760 587 286 44 88 chr5 23036568 23036863 -129500396 + Lx8 LINE L1 7190 7471 -2 5 760 838 235 55 39 chr5 23037127 23037384 -129499875 - B4 SINE B4 -3 289 29 5 760 343 305 19 28 chr5 23038087 23038195 -129499064 - B4A SINE B4 -185 107 1 5 760 244 324 0 0 chr5 23038825 23038896 -129498363 + ID4 SINE ID 2 72 -11 5 760 243 292 0 30 chr5 23039158 23039225 -129498034 - ID4_ SINE ID -17 66 2 6 760 501 172 31 39 chr5 23039279 23039406 -129497853 + RMER4B LTR ERVK 17 142 -443 6 760 339 269 29 116 chr5 23039452 23039658 -129497601 + RMER4B LTR ERVK 415 571 -40 6 760 396 0 0 0 chr5 23040673 23040717 -129496542 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 760 689 233 30 55 chr5 23040747 23040947 -129496312 - B3A SINE B2 -3 195 1 6 760 567 280 20 89 chr5 23041613 23041860 -129495399 + B4A SINE B4 2 231 -61 6 760 227 137 233 17 chr5 23041861 23041946 -129495313 + B1_Mus2 SINE Alu 1 112 -5 6 760 498 101 0 37 chr5 23042244 23042326 -129494933 - B1_Mus2 SINE Alu -1 146 68 6 760 439 250 44 22 chr5 23042778 23042913 -129494346 - B3 SINE B2 -3 213 76 6 760 302 294 91 45 chr5 23043265 23043397 -129493862 - RSINE1 SINE B4 -25 140 3 6 760 1489 73 5 0 chr5 23043424 23043616 -129493643 + B2_Mm1a SINE B2 1 193 0 6 760 420 292 47 0 chr5 23043628 23043734 -129493525 + B1_Mur1 SINE Alu 3 113 -36 7 760 186 43 0 0 chr5 23043739 23043762 -129493497 + (G)n Simple_repeat Simple_repeat 1 23 0 7 760 454 284 20 47 chr5 23043866 23044014 -129493245 + B4A SINE B4 143 286 -6 7 760 1264 83 78 0 chr5 23044062 23044242 -129493017 + B2_Mm2 SINE B2 2 195 0 7 760 1183 203 79 68 chr5 23044244 23044598 -129492661 + ORR1D1 LTR MaLR 17 374 0 7 760 360 0 0 0 chr5 23044622 23044662 -129492597 + (GA)n Simple_repeat Simple_repeat 2 41 0 7 760 2943 43 3 0 chr5 23045190 23045535 -129491724 + ORR1A1 LTR MaLR 1 346 0 7 760 628 62 0 0 chr5 23045913 23046010 -129491249 + B1_Mur4 SINE Alu 53 150 0 7 760 349 280 43 50 chr5 23046817 23046854 -129490405 + B1F1 SINE Alu 8 45 -104 7 760 3882 52 19 0 chr5 23046854 23047320 -129489939 + MT2C_Mm LTR ERVL 1 475 0 7 760 349 280 43 50 chr5 23047320 23047421 -129489838 + B1F1 SINE Alu 46 144 -5 7 760 325 331 66 6 chr5 23047509 23047676 -129489583 + L1M2 LINE L1 5647 5823 -468 8 760 450 202 38 19 chr5 23047825 23047931 -129489328 - PB1D9 SINE Alu -2 118 11 8 760 290 257 57 0 chr5 23047926 23047996 -129489263 - B4A SINE B4 -63 229 156 8 760 2052 55 97 0 chr5 23047998 23048306 -129488953 + ORR1A1 LTR MaLR 1 338 -8 8 760 867 221 53 19 chr5 23048361 23048569 -129488690 - B3 SINE B2 0 216 2 8 760 481 115 394 0 chr5 23048603 23048707 -129488552 + B1_Mus2 SINE Alu 3 147 0 8 760 771 164 34 0 chr5 23048804 23048950 -129488309 + URR1A DNA MER1_type 76 226 0 8 760 1207 48 0 0 chr5 23049111 23049256 -129488003 - B1_Mm SINE Alu -1 146 2 8 760 576 0 0 0 chr5 23049545 23049609 -129487650 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 760 1166 89 0 0 chr5 23049753 23049899 -129487360 - B1_Mm SINE Alu 0 147 2 8 760 437 257 18 9 chr5 23049986 23050100 -129487159 - ID_B1 SINE B4 -11 213 99 9 760 407 281 64 7 chr5 23050100 23050116 -129487143 - B1F SINE Alu -1 98 1 9 760 721 161 133 24 chr5 23050219 23050384 -129486875 - B2_Mm2 SINE B2 -11 184 2 9 760 189 0 0 0 chr5 23050680 23050701 -129486558 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 760 1333 91 16 0 chr5 23051052 23051238 -129486021 + B2_Mm1t SINE B2 3 191 -2 9 760 287 268 24 0 chr5 23051520 23051602 -129485657 - PB1D7 SINE Alu -32 88 5 9 760 300 266 106 0 chr5 23051641 23051735 -129485524 + B3A SINE B2 31 134 -64 9 760 288 0 0 0 chr5 23051755 23051787 -129485472 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 760 2392 216 122 19 chr5 23051867 23052509 -129484750 + RMER1B Other Other 359 1066 0 9 760 192 77 0 0 chr5 23052893 23052919 -129484340 + (A)n Simple_repeat Simple_repeat 1 26 0 9 760 1190 75 0 0 chr5 23053492 23053638 -129483621 + B1_Mus1 SINE Alu 1 146 -2 1 760 257 72 13 115 chr5 23053639 23053717 -129483542 + A-rich Low_complexity Low_complexity 5 74 0 1 760 1542 186 52 6 chr5 23053890 23054214 -129483045 + ORR1B1 LTR MaLR 48 386 -8 1 760 316 289 139 8 chr5 23054517 23054646 -129482613 + B1F SINE Alu 4 149 0 1 760 235 295 22 44 chr5 23055696 23055877 -129481382 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 760 388 200 211 0 chr5 23056126 23056221 -129481038 + PB1D10 SINE Alu 1 115 -2 1 760 331 318 82 15 chr5 23056784 23056918 -129480341 + B1_Mur1 SINE Alu 4 146 -3 1 760 923 179 196 0 chr5 23057058 23057237 -129480022 + B3 SINE B2 3 216 0 1 760 281 322 7 47 chr5 23057506 23057656 -129479603 + MER57C2 LTR ERV1 2 145 -289 1 760 318 50 0 0 chr5 23058195 23058235 -129479024 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 760 581 314 38 14 chr5 23058390 23058600 -129478659 - B3 SINE B2 -1 215 1 1 760 395 253 171 20 chr5 23059364 23059549 -129477710 + MTC LTR MaLR 104 325 -94 1 760 631 161 18 0 chr5 23059655 23059767 -129477492 - MTD LTR MaLR -305 114 1 1 760 21 36 0 0 chr5 23059789 23059817 -129477442 + AT_rich Low_complexity Low_complexity 1 28 0 1 760 457 208 90 47 chr5 23059838 23060031 -129477228 + RLTR18 LTR ERVK 1 200 -312 1 760 760 239 72 112 chr5 23060182 23060531 -129476728 + RLTR18 LTR ERVK 282 616 0 1 760 2085 132 161 11 chr5 23062005 23062451 -129474808 + RLTR28 LTR ERVL 1 513 -11 1 760 245 250 218 11 chr5 23062810 23062984 -129474275 + L1MB7 LINE L1 5531 5740 -444 1 760 298 272 19 0 chr5 23063033 23063136 -129474123 + L1MB7 LINE L1 6065 6169 -15 1 760 691 65 10 1 chr5 23063437 23063547 -129473712 + B1_Mus2 SINE Alu 39 148 0 1 760 342 115 0 0 chr5 23063547 23063599 -129473660 + (A)n Simple_repeat Simple_repeat 1 52 0 1 760 238 246 0 17 chr5 23064297 23064355 -129472904 + (CCA)n Simple_repeat Simple_repeat 2 58 0 1 760 354 335 98 56 chr5 23064727 23064961 -129472298 - B4A SINE B4 -18 274 31 1 760 374 169 65 0 chr5 23066000 23066077 -129471182 - B1_Mus2 SINE Alu -1 146 65 1 760 596 240 27 0 chr5 23066104 23066239 -129471020 + URR1A DNA MER1_type 49 187 -39 1 760 2447 91 50 46 chr5 23066239 23066699 -129470560 + RMER17A LTR ERVK 1 462 -289 1 760 673 277 92 34 chr5 23066695 23066957 -129470302 + B4A SINE B4 16 292 0 1 760 198 240 0 0 chr5 23066969 23067019 -129470240 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 761 987 202 0 42 chr5 23069634 23069846 -129467413 + B3 SINE B2 1 203 -13 1 761 21 0 0 0 chr5 23070447 23070468 -129466791 + AT_rich Low_complexity Low_complexity 1 21 0 1 761 207 100 0 0 chr5 23071013 23071043 -129466216 + (TGG)n Simple_repeat Simple_repeat 1 30 0 1 761 624 50 0 0 chr5 23071491 23071571 -129465688 + (TCCA)n Simple_repeat Simple_repeat 4 83 0 1 761 244 254 266 0 chr5 23072632 23072809 -129464450 + MER33 DNA MER1_type 57 280 -44 1 761 477 288 8 8 chr5 23073092 23073211 -129464048 - ID_B1 SINE B4 -13 211 93 1 761 329 77 0 0 chr5 23073247 23073299 -129463960 + B1_Mus1 SINE Alu 1 52 -96 1 761 739 168 79 21 chr5 23073398 23073538 -129463721 + B1_Mus1 SINE Alu 1 148 0 1 761 1026 267 41 40 chr5 23073783 23074190 -129463069 + MTE2a LTR MaLR 6 405 -14 1 761 391 313 84 0 chr5 23074192 23074371 -129462888 + L1MB8 LINE L1 5409 5602 -582 1 761 917 249 48 14 chr5 23074376 23074584 -129462675 + B3 SINE B2 1 215 -1 1 761 1134 75 0 7 chr5 23074604 23074752 -129462507 - B1_Mus1 SINE Alu -1 147 1 1 761 392 296 63 8 chr5 23074778 23074904 -129462355 + RSINE1 SINE B4 2 134 -31 1 761 204 67 0 0 chr5 23074918 23074948 -129462311 + (CAAT)n Simple_repeat Simple_repeat 1 30 0 1 761 616 225 102 14 chr5 23074959 23075175 -129462084 + L1MB8 LINE L1 5599 5833 -345 1 761 2290 146 44 54 chr5 23075806 23076284 -129460975 - IAPLTR2_Mm LTR ERVK -2 473 1 1 761 6855 29 4 0 chr5 23076284 23077065 -129460194 - IAPEz-int LTR ERVK 0 6481 5698 1 761 5864 9 2 0 chr5 23077064 23077702 -129459557 - IAPEz-int LTR ERVK -1720 4761 4123 1 761 953 80 24 0 chr5 23077704 23077829 -129459430 - IAPEz-int LTR ERVK -2770 4910 4783 1 761 1835 119 4 4 chr5 23077824 23078086 -129459173 - IAPEz-int LTR ERVK -5183 2497 2236 1 761 454 66 0 32 chr5 23078075 23078138 -129459121 - IAPEz-int LTR ERVK -5062 1419 1359 1 761 4439 63 38 2 chr5 23078138 23078737 -129458522 - IAPEz-int LTR ERVK -5819 662 3 1 761 2290 146 44 54 chr5 23078737 23079215 -129458044 - IAPLTR2_Mm LTR ERVK -2 473 1 1 761 815 220 94 5 chr5 23080250 23080442 -129456817 + B3 SINE B2 1 209 -7 1 761 569 180 62 9 chr5 23080448 23080560 -129456699 + PB1D9 SINE Alu 3 120 0 1 761 287 270 29 20 chr5 23081269 23081371 -129455888 + PB1D9 SINE Alu 13 115 -5 1 761 198 191 0 0 chr5 23081372 23081414 -129455845 + GA-rich Low_complexity Low_complexity 1 42 0 1 761 582 210 105 0 chr5 23081416 23081540 -129455719 + B1_Mur4 SINE Alu 1 137 -13 1 761 218 32 32 0 chr5 23081540 23081571 -129455688 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 761 1511 274 66 13 chr5 23081584 23082171 -129455088 + L1M4 LINE L1 4360 4961 -1185 1 761 225 369 73 8 chr5 23083148 23083271 -129453988 + L1MEe LINE L1 506 636 -5483 1 761 455 280 74 31 chr5 23083395 23083557 -129453702 - MER2 DNA MER2_type -31 314 146 1 761 290 289 27 0 chr5 23083819 23083919 -129453340 + B1F SINE Alu 6 108 -12 1 761 268 245 76 89 chr5 23084215 23084372 -129452887 + L1MEe LINE L1 1571 1725 -4424 1 761 507 232 0 43 chr5 23084452 23084569 -129452690 + B1_Mur1 SINE Alu 2 113 -36 1 761 549 233 221 0 chr5 23085149 23085312 -129451947 + B3 SINE B2 12 210 -6 1 761 201 133 0 0 chr5 23085685 23085715 -129451544 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1 761 23 0 0 0 chr5 23086434 23086457 -129450802 + AT_rich Low_complexity Low_complexity 1 23 0 1 761 446 237 176 0 chr5 23086532 23086663 -129450596 - B3A SINE B2 -42 156 3 1 761 1410 73 17 0 chr5 23086750 23086928 -129450331 + B2_Mm2 SINE B2 1 181 -14 1 761 490 88 300 58 chr5 23086956 23087076 -129450183 + B2_Mm2 SINE B2 47 195 0 1 761 180 231 0 0 chr5 23087435 23087474 -129449785 - MER5B DNA MER1_type -79 99 61 1 761 339 226 167 0 chr5 23087542 23087644 -129449615 + B1_Mur2 SINE Alu 31 149 0 1 761 521 234 56 0 chr5 23087843 23087950 -129449309 + B1_Mus2 SINE Alu 3 115 -32 1 761 286 215 31 0 chr5 23087940 23088005 -129449254 - PB1D10 SINE Alu -32 85 19 1 761 180 0 0 0 chr5 23088310 23088330 -129448929 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 761 1328 84 11 0 chr5 23088330 23088509 -129448750 - B2_Mm1t SINE B2 -12 181 1 1 761 467 309 273 48 chr5 23088599 23089235 -129448024 + MER21B LTR ERV1 1 780 -83 1 761 3419 30 5 0 chr5 23089235 23089629 -129447630 - MTA_Mm LTR MaLR 0 396 1 1 761 9022 43 7 1 chr5 23089629 23090720 -129446539 - MTA_Mm-int LTR MaLR 0 1098 1 1 761 3474 20 8 0 chr5 23090720 23091113 -129446146 - MTA_Mm LTR MaLR 0 396 1 1 761 402 317 37 82 chr5 23091113 23091133 -129446126 + MER21B LTR ERV1 781 798 -65 1 761 230 0 33 0 chr5 23091171 23091201 -129446058 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 761 393 45 14 0 chr5 23091201 23091257 -129446002 - B1_Mus2 SINE Alu -7 140 52 1 761 1169 75 0 0 chr5 23091335 23091481 -129445778 + B1_Mus2 SINE Alu 2 147 0 1 761 363 316 17 0 chr5 23091610 23091727 -129445532 + RMER1B Other Other 594 712 -354 1 761 21 0 0 0 chr5 23092064 23092085 -129445174 + AT_rich Low_complexity Low_complexity 1 21 0 1 761 369 184 92 0 chr5 23092085 23092161 -129445098 - ID4 SINE ID 0 83 1 1 761 1637 292 109 30 chr5 23092295 23092965 -129444294 + Lx8 LINE L1 6561 7283 -190 1 761 349 260 90 0 chr5 23093929 23094029 -129443230 + B1F1 SINE Alu 1 109 -40 1 761 426 307 76 29 chr5 23094735 23094906 -129442353 + B4A SINE B4 29 207 -85 1 761 367 272 24 109 chr5 23094924 23095089 -129442170 + B3A SINE B2 48 198 0 1 761 476 302 58 0 chr5 23095092 23095231 -129442028 + B3A SINE B2 5 151 -47 1 761 21 36 0 0 chr5 23095250 23095278 -129441981 + AT_rich Low_complexity Low_complexity 1 28 0 1 761 1100 164 59 154 chr5 23095293 23095457 -129441802 - RMER17C LTR ERVK -56 354 207 1 761 549 0 0 0 chr5 23095457 23095518 -129441741 + (GGGGA)n Simple_repeat Simple_repeat 3 63 0 1 761 1100 164 59 154 chr5 23095518 23095742 -129441517 - RMER17C LTR ERVK -204 206 3 1 761 295 208 0 72 chr5 23095742 23095823 -129441436 + B4A SINE B4 218 292 0 1 761 271 254 0 15 chr5 23095884 23095952 -129441307 + ID2 SINE ID 3 69 -14 1 761 595 170 147 210 chr5 23096281 23096390 -129440869 + URR1B DNA MER1_type 2 143 -82 1 761 1642 31 0 10 chr5 23096390 23096583 -129440676 + B2_Mm1a SINE B2 1 191 -2 1 761 595 170 147 210 chr5 23096583 23096711 -129440548 + URR1B DNA MER1_type 144 224 -1 1 761 298 354 0 9 chr5 23096717 23096831 -129440428 + RSINE1 SINE B4 30 142 -23 1 761 225 132 0 0 chr5 23096863 23096901 -129440358 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 761 274 327 26 26 chr5 23096924 23097037 -129440222 - PB1D10 SINE Alu -4 113 1 1 761 266 324 43 35 chr5 23097876 23097991 -129439268 - PB1 SINE Alu -11 116 1 1 761 326 234 45 27 chr5 23098249 23098359 -129438900 + B4A SINE B4 19 130 -162 1 761 219 377 0 25 chr5 23098821 23098900 -129438359 - ID4 SINE ID -6 77 1 1 761 418 295 166 11 chr5 23099176 23099351 -129437908 - RMER30 DNA MER1_type 0 202 1 1 761 1132 15 73 0 chr5 23100365 23100501 -129436758 + B1_Mm SINE Alu 2 147 0 1 761 234 190 34 17 chr5 23101373 23101432 -129435827 - MLT1A0 LTR MaLR -302 63 4 1 761 362 218 49 106 chr5 23101433 23101556 -129435703 + B3 SINE B2 100 215 -1 1 761 498 239 0 0 chr5 23101608 23101700 -129435559 + B1_Mur1 SINE Alu 34 125 -24 1 761 252 311 40 56 chr5 23102440 23102566 -129434693 - MIRb SINE MIR -43 225 102 1 761 661 204 74 6 chr5 23102734 23102897 -129434362 + B3 SINE B2 1 174 -42 1 761 1158 54 0 26 chr5 23102946 23103097 -129434162 + B1_Mm SINE Alu 1 147 0 1 761 200 128 26 0 chr5 23103097 23103136 -129434123 + A-rich Low_complexity Low_complexity 3 42 0 1 761 530 266 88 29 chr5 23103179 23103379 -129433880 + MTC LTR MaLR 2 213 -208 1 761 376 274 0 0 chr5 23103379 23103479 -129433780 + B1_Mur3 SINE Alu 1 100 -20 2 761 1873 82 11 7 chr5 23103488 23103758 -129433501 + Lx3_Mus LINE L1 6739 7009 0 2 761 26 30 0 0 chr5 23103758 23103791 -129433468 + AT_rich Low_complexity Low_complexity 1 33 0 2 761 451 190 94 8 chr5 23103846 23103963 -129433296 + MTC LTR MaLR 279 405 -14 1 761 1448 171 51 113 chr5 23105930 23106320 -129430939 - ORR1D1 LTR MaLR -8 366 1 2 761 284 299 62 124 chr5 23106362 23106507 -129430752 - RSINE1 SINE B4 0 165 30 2 761 261 0 0 0 chr5 23106578 23106607 -129430652 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 761 250 317 126 28 chr5 23107427 23107570 -129429689 - B4 SINE B4 -13 279 123 2 761 288 297 0 11 chr5 23107973 23108065 -129429194 + GA-rich Low_complexity Low_complexity 3 93 0 2 761 897 252 9 27 chr5 23108189 23108409 -129428850 + B3 SINE B2 1 216 0 2 761 384 194 172 10 chr5 23108445 23108544 -129428715 - B1_Mur2 SINE Alu -20 129 15 2 761 483 204 163 0 chr5 23108552 23108724 -129428535 + Lx9 LINE L1 7445 7644 0 2 761 220 291 38 12 chr5 23109343 23109423 -129427836 + PB1D10 SINE Alu 4 85 -32 2 761 230 282 11 34 chr5 23109453 23109476 -129427783 + ID_B1 SINE B4 129 214 -10 2 761 390 154 0 0 chr5 23109476 23109541 -129427718 + B1F1 SINE Alu 75 139 -10 2 761 341 200 67 0 chr5 23109637 23109727 -129427532 + PB1D9 SINE Alu 5 100 -20 2 761 24 32 0 0 chr5 23109887 23109918 -129427341 + AT_rich Low_complexity Low_complexity 1 31 0 2 761 234 81 0 0 chr5 23110773 23110810 -129426449 + (CAA)n Simple_repeat Simple_repeat 3 39 0 2 761 253 0 54 0 chr5 23110896 23110933 -129426326 + (TAAAAA)n Simple_repeat Simple_repeat 3 41 0 2 761 1218 41 7 0 chr5 23111069 23111215 -129426044 + B1_Mus2 SINE Alu 1 147 0 2 761 370 323 32 0 chr5 23111631 23111755 -129425504 + B1F SINE Alu 1 128 -21 2 761 303 191 214 0 chr5 23112374 23112463 -129424796 + B3A SINE B2 1 108 -90 2 761 231 128 0 0 chr5 23112503 23112536 -129424723 + (T)n Simple_repeat Simple_repeat 1 33 0 2 761 1248 41 0 0 chr5 23112536 23112683 -129424576 - B1_Mm SINE Alu 0 147 1 2 761 231 128 0 0 chr5 23112683 23112696 -129424563 + (T)n Simple_repeat Simple_repeat 1 13 0 2 761 219 114 0 0 chr5 23112702 23112737 -129424522 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 761 485 261 121 25 chr5 23112739 23112896 -129424363 - B3A SINE B2 -16 182 11 2 761 911 98 0 0 chr5 23113202 23113334 -129423925 + B1_Mus1 SINE Alu 17 148 0 2 761 207 0 0 0 chr5 23113344 23113367 -129423892 + (GA)n Simple_repeat Simple_repeat 2 24 0 2 761 1094 179 9 49 chr5 23113587 23113810 -129423449 + B3 SINE B2 3 216 0 2 761 244 260 27 14 chr5 23114322 23114396 -129422863 + PB1D10 SINE Alu 43 117 0 2 761 315 290 49 43 chr5 23114398 23114560 -129422699 + RSINE1 SINE B4 3 165 0 2 761 282 218 8 84 chr5 23115925 23116055 -129421204 + L1M5 LINE L1 5651 5772 -392 2 761 519 139 0 11 chr5 23116861 23116948 -129420311 + B1_Mus2 SINE Alu 62 147 0 2 761 180 0 0 0 chr5 23118384 23118404 -129418855 + (AGCTG)n Simple_repeat Simple_repeat 1 20 0 2 761 1094 90 14 0 chr5 23119114 23119259 -129418000 + B1_Mus1 SINE Alu 2 148 0 2 761 385 213 49 82 chr5 23119260 23119444 -129417815 + GA-rich Low_complexity Low_complexity 1 178 0 2 761 917 83 8 0 chr5 23119447 23119579 -129417680 + (GAAAA)n Simple_repeat Simple_repeat 2 134 0 2 761 1620 0 0 0 chr5 23119579 23119759 -129417500 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 2 761 1163 55 7 0 chr5 23119912 23120057 -129417202 + B1_Mm SINE Alu 2 147 0 2 761 972 126 42 0 chr5 23120081 23120248 -129417011 + URR1B DNA MER1_type 51 224 -1 2 761 506 249 57 36 chr5 23120248 23120273 -129416986 - CYRA11_Mm Unknown Y-chromosome -272 345 150 2 761 201 96 0 103 chr5 23123344 23123402 -129413857 + A-rich Low_complexity Low_complexity 5 56 0 2 761 236 325 0 12 chr5 23123634 23123718 -129413541 + MIRb SINE MIR 86 168 -100 2 761 683 161 48 8 chr5 23124350 23124475 -129412784 + B1_Mur3 SINE Alu 1 130 -19 2 761 898 84 64 19 chr5 23124521 23124678 -129412581 + B2_Mm2 SINE B2 1 164 -31 2 761 528 288 38 6 chr5 23125056 23125213 -129412046 + RSINE1 SINE B4 4 165 0 2 761 416 230 59 20 chr5 23126241 23126343 -129410916 - B1_Mm SINE Alu -40 107 2 2 761 398 265 10 39 chr5 23126838 23126940 -129410319 - B3A SINE B2 -99 99 1 2 761 256 319 48 40 chr5 23127135 23127259 -129410000 + RSINE1 SINE B4 15 139 -26 2 761 690 125 0 0 chr5 23127298 23127410 -129409849 + (GA)n Simple_repeat Simple_repeat 1 112 0 2 761 360 218 136 34 chr5 23127440 23127587 -129409672 - ID_B1 SINE B4 -62 162 1 2 761 245 29 29 0 chr5 23127818 23127852 -129409407 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 761 842 246 54 0 chr5 23128066 23128269 -129408990 - B3 SINE B2 -2 214 1 2 761 671 190 0 0 chr5 23128301 23128417 -129408842 + B3 SINE B2 4 119 -97 2 761 295 245 100 36 chr5 23128574 23128684 -129408575 + RSINE1 SINE B4 6 122 -43 2 761 30 27 0 0 chr5 23128730 23128767 -129408492 + AT_rich Low_complexity Low_complexity 1 37 0 2 761 1239 55 0 0 chr5 23129080 23129226 -129408033 + B1_Mus2 SINE Alu 2 147 0 2 761 459 0 0 0 chr5 23130089 23130140 -129407119 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 2 761 493 277 18 59 chr5 23130334 23130503 -129406756 - RSINE1 SINE B4 0 165 4 2 761 198 0 0 0 chr5 23131704 23131726 -129405533 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2 761 440 220 110 0 chr5 23131897 23132006 -129405253 + B1_Mur1 SINE Alu 21 141 -8 2 761 493 85 37 0 chr5 23132335 23132417 -129404842 - L1Md_F2 LINE L1 -2 6580 6496 2 761 332 283 8 8 chr5 23132489 23132617 -129404642 + L1M4 LINE L1 4575 4702 -1438 2 761 384 231 87 40 chr5 23132651 23132777 -129404482 + L1M4 LINE L1 4864 4995 -1151 2 761 474 161 156 37 chr5 23133557 23133680 -129403579 + B1_Mur2 SINE Alu 2 137 -13 2 761 513 0 0 0 chr5 23133680 23133737 -129403522 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 2 761 333 229 257 0 chr5 23133755 23133864 -129403395 + RSINE1 SINE B4 29 165 0 2 761 414 257 86 0 chr5 23133905 23134010 -129403249 + ID_B1 SINE B4 92 205 -19 2 761 265 254 48 48 chr5 23134227 23134351 -129402908 + L1MB7 LINE L1 6013 6136 -48 2 761 393 175 29 0 chr5 23134721 23134824 -129402435 + GA-rich Low_complexity Low_complexity 2 107 0 2 761 278 268 42 0 chr5 23135313 23135384 -129401875 - B1F1 SINE Alu -70 79 6 2 761 241 143 17 35 chr5 23135602 23135660 -129401599 + CT-rich Low_complexity Low_complexity 2 58 0 2 761 221 315 61 97 chr5 23136356 23136521 -129400738 + RSINE1 SINE B4 5 163 -2 2 761 387 0 0 0 chr5 23137666 23137709 -129399550 + (GGA)n Simple_repeat Simple_repeat 1 43 0 2 761 404 253 0 0 chr5 23138834 23138917 -129398342 + ID4 SINE ID 1 83 0 2 761 196 336 54 39 chr5 23138926 23139056 -129398203 - MIRb SINE MIR -108 160 29 2 761 311 230 40 0 chr5 23139354 23139428 -129397831 + L1MB4 LINE L1 5829 5905 -275 2 761 378 283 56 12 chr5 23139463 23139624 -129397635 + L1MB4 LINE L1 5991 6158 -22 2 761 222 37 0 0 chr5 23140103 23140130 -129397129 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 761 321 259 113 47 chr5 23140213 23140363 -129396896 - L1MD2 LINE L1 -452 5907 5748 2 761 297 241 12 0 chr5 23140631 23140714 -129396545 - Lx2B LINE L1 -1 6999 6916 2 761 1261 14 0 7 chr5 23140718 23140864 -129396395 - B1_Mus2 SINE Alu -1 146 2 2 761 403 191 32 11 chr5 23140933 23141028 -129396231 - B3 SINE B2 -119 97 1 2 761 280 213 0 19 chr5 23141474 23141548 -129395711 - PB1D7 SINE Alu -27 93 21 2 761 629 304 72 27 chr5 23142343 23142678 -129394581 - RMER5 LTR ERV1 0 534 185 2 761 1388 47 47 0 chr5 23142723 23142894 -129394365 + B2_Mm2 SINE B2 2 180 -15 2 761 732 43 0 0 chr5 23142897 23142989 -129394270 + (GGAAA)n Simple_repeat Simple_repeat 4 95 0 2 761 1067 90 14 0 chr5 23143491 23143636 -129393623 + B1_Mm SINE Alu 1 147 0 2 761 210 176 0 0 chr5 23143636 23143687 -129393572 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 761 521 243 68 8 chr5 23144186 23144325 -129392934 + ID_B1 SINE B4 95 239 -53 2 761 590 21 228 50 chr5 23144416 23144517 -129392742 - B1_Mus1 SINE Alu -5 143 25 2 761 442 272 26 0 chr5 23144564 23144678 -129392581 + ID_B1 SINE B4 103 219 -5 2 761 369 292 68 27 chr5 23145783 23145931 -129391328 - B4A SINE B4 -54 238 85 2 761 247 243 101 8 chr5 23146309 23146441 -129390818 - Lx8 LINE L1 -1567 5906 5757 2 761 210 105 0 0 chr5 23147112 23147150 -129390109 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 761 1235 41 0 7 chr5 23147150 23147291 -129389968 - B1_Mus1 SINE Alu -7 141 1 2 761 313 302 0 0 chr5 23147596 23147702 -129389557 + MARNA DNA Mariner 279 384 -202 2 761 799 50 217 0 chr5 23148276 23148396 -129388863 + B1_Mus2 SINE Alu 2 147 0 2 761 207 0 0 0 chr5 23148399 23148422 -129388837 + (A)n Simple_repeat Simple_repeat 1 23 0 2 761 279 0 0 0 chr5 23148797 23148828 -129388431 + (TCTCCC)n Simple_repeat Simple_repeat 5 35 0 2 761 234 279 100 12 chr5 23148990 23149070 -129388189 - PB1D7 SINE Alu 0 120 34 2 761 236 268 14 40 chr5 23149506 23149580 -129387679 + ID4_ SINE ID 3 74 -9 2 761 631 254 112 15 chr5 23149917 23150113 -129387146 - B3 SINE B2 0 216 2 3 761 301 312 45 0 chr5 23150442 23150554 -129386705 - RSINE1 SINE B4 -22 143 27 3 761 685 180 28 21 chr5 23150620 23150762 -129386497 - B1_Mur2 SINE Alu 0 149 7 3 761 1099 89 0 7 chr5 23150816 23150963 -129386296 + B1_Mus1 SINE Alu 3 148 0 3 761 479 95 14 0 chr5 23150963 23151037 -129386222 + (GAAAA)n Simple_repeat Simple_repeat 4 78 0 3 761 370 255 18 54 chr5 23151345 23151457 -129385802 + RSINE1 SINE B4 58 165 0 3 761 1386 82 60 0 chr5 23152526 23152709 -129384550 + B2_Mm2 SINE B2 2 195 0 3 761 1236 54 0 0 chr5 23152967 23153114 -129384145 + B1_Mm SINE Alu 1 147 0 3 761 180 0 0 0 chr5 23153124 23153144 -129384115 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 3 761 230 257 82 20 chr5 23153479 23153626 -129383633 + RMER10A LTR ERVL 265 420 -22 3 761 431 139 0 14 chr5 23154335 23154408 -129382851 - URR1B DNA MER1_type 0 225 154 3 761 1179 50 0 0 chr5 23154427 23154566 -129382693 - B1_Mus1 SINE Alu -9 139 1 3 761 2193 108 9 55 chr5 23154576 23154919 -129382340 - ORR1A2 LTR MaLR 0 327 1 3 761 728 132 10 213 chr5 23154919 23154964 -129382295 - URR1B DNA MER1_type -64 161 124 3 761 1435 65 5 5 chr5 23154964 23155149 -129382110 + B2_Mm1a SINE B2 2 186 -7 3 761 728 132 10 213 chr5 23155149 23155305 -129381954 - URR1B DNA MER1_type -102 123 1 3 761 773 193 0 7 chr5 23155422 23155563 -129381696 - B1_Mur4 SINE Alu -10 140 1 3 761 279 224 0 0 chr5 23156680 23156738 -129380521 + Lx9 LINE L1 7439 7496 -148 3 761 831 202 89 16 chr5 23156873 23157064 -129380195 + B3 SINE B2 2 206 -10 3 761 1435 139 9 0 chr5 23157381 23157604 -129379655 + URR1B DNA MER1_type 1 225 0 3 761 444 277 197 25 chr5 23157631 23157875 -129379384 + B4A SINE B4 2 287 -5 3 761 24 53 0 0 chr5 23157964 23158002 -129379257 + AT_rich Low_complexity Low_complexity 1 38 0 3 761 382 271 136 48 chr5 23158045 23158192 -129379067 + RSINE1 SINE B4 2 161 -4 3 761 259 253 52 10 chr5 23158280 23158376 -129378883 + PB1D10 SINE Alu 17 116 -1 3 761 315 254 314 0 chr5 23158379 23158548 -129378711 + ID_B1 SINE B4 2 223 -1 3 761 1070 101 0 0 chr5 23158768 23158906 -129378353 + B1_Mus1 SINE Alu 3 140 -8 3 761 1264 92 35 0 chr5 23159253 23159426 -129377833 + B2_Mm1t SINE B2 1 179 -14 3 761 384 112 383 0 chr5 23159443 23159550 -129377709 + B2_Mm2 SINE B2 47 194 -1 3 761 362 295 217 12 chr5 23159601 23159869 -129377390 + Lx9 LINE L1 6990 7323 -150 3 761 250 224 141 0 chr5 23160025 23160110 -129377149 + L1MB5 LINE L1 5837 5933 -251 3 761 490 188 173 0 chr5 23160114 23160247 -129377012 - RMER4A LTR ERVK -3 463 308 3 761 2332 156 49 20 chr5 23160250 23160702 -129376557 - RMER4A LTR ERVK 0 466 2 3 761 294 322 33 20 chr5 23160762 23160914 -129376345 + L1MB5 LINE L1 6012 6165 -9 3 761 256 222 91 80 chr5 23160948 23161036 -129376223 - PB1D9 SINE Alu -6 114 26 3 761 397 185 9 18 chr5 23161257 23161367 -129375892 + GA-rich Low_complexity Low_complexity 3 111 0 3 761 286 314 76 0 chr5 23162003 23162121 -129375138 + B1F2 SINE Alu 1 127 -22 3 761 320 262 118 27 chr5 23162208 23162318 -129374941 + PB1D7 SINE Alu 1 120 0 3 761 239 250 28 42 chr5 23162319 23162390 -129374869 + ID_B1 SINE B4 72 141 -83 3 761 254 258 30 0 chr5 23162405 23162471 -129374788 + PB1D9 SINE Alu 12 79 -41 3 761 1145 62 0 33 chr5 23163030 23163181 -129374078 + B1_Mus2 SINE Alu 2 147 0 3 761 789 130 0 0 chr5 23163209 23163371 -129373888 + (CA)n Simple_repeat Simple_repeat 2 163 0 3 761 746 340 166 35 chr5 23163380 23164481 -129372778 + Lx8 LINE L1 6211 7456 -17 3 761 21 82 0 0 chr5 23164518 23164567 -129372692 + AT_rich Low_complexity Low_complexity 1 49 0 3 761 482 259 59 0 chr5 23164796 23164931 -129372328 + Lx8 LINE L1 7131 7273 -200 3 761 717 207 190 35 chr5 23165007 23165297 -129371962 + L1MC LINE L1 4868 5202 -944 3 761 357 125 0 0 chr5 23165474 23165530 -129371729 + (TTTTC)n Simple_repeat Simple_repeat 4 59 0 3 761 1094 106 0 6 chr5 23165555 23165716 -129371543 - B2_Mm2 SINE B2 -25 170 11 3 761 1401 71 5 16 chr5 23165847 23166033 -129371226 + B2_Mm1a SINE B2 2 185 -8 3 761 237 132 0 0 chr5 23166453 23166491 -129370768 + (CACG)n Simple_repeat Simple_repeat 1 38 0 3 761 230 261 80 48 chr5 23166715 23166840 -129370419 + L1M4 LINE L1 5786 5914 -260 3 761 374 245 76 10 chr5 23167329 23167441 -129369818 + B1F2 SINE Alu 3 123 -26 3 761 378 282 16 33 chr5 23167640 23167761 -129369498 - ORR1D2 LTR MaLR -206 164 46 3 761 240 306 87 77 chr5 23167949 23168006 -129369253 - MER58B DNA MER1_type -43 298 239 3 761 715 231 14 27 chr5 23168006 23168153 -129369106 + B1_Mur2 SINE Alu 3 147 -2 3 761 240 306 87 77 chr5 23168153 23168290 -129368969 - MER58B DNA MER1_type -103 238 103 3 761 489 278 28 0 chr5 23168384 23168492 -129368767 + B1F2 SINE Alu 7 117 -32 3 761 297 300 11 22 chr5 23168709 23168801 -129368458 + B3 SINE B2 1 91 -125 3 761 405 0 0 0 chr5 23168842 23168887 -129368372 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 3 761 738 163 15 30 chr5 23168892 23169025 -129368234 - B1_Mur4 SINE Alu -15 135 5 3 761 1402 69 5 26 chr5 23169096 23169290 -129367969 + B2_Mm2 SINE B2 2 191 -4 3 761 588 250 145 0 chr5 23169418 23169570 -129367689 - B3 SINE B2 -42 174 1 3 761 304 267 235 26 chr5 23169681 23169873 -129367386 - B4A SINE B4 -56 236 4 3 761 240 252 292 62 chr5 23169993 23170154 -129367105 + B3A SINE B2 1 198 0 3 761 1183 63 0 0 chr5 23170227 23170369 -129366890 + B1_Mus1 SINE Alu 1 142 -6 3 761 513 0 0 0 chr5 23170371 23170428 -129366831 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 3 761 1763 47 0 0 chr5 23170486 23170698 -129366561 + L1Md_F2 LINE L1 6357 6568 -14 3 761 26 0 0 0 chr5 23170698 23170724 -129366535 + AT_rich Low_complexity Low_complexity 1 26 0 3 761 542 218 162 89 chr5 23170746 23170860 -129366399 + B3 SINE B2 9 141 -75 3 761 496 58 0 0 chr5 23170860 23170966 -129366293 - L1Md_F2 LINE L1 0 6582 6501 3 761 542 218 162 89 chr5 23170966 23171041 -129366218 + B3 SINE B2 142 212 -4 3 761 383 271 25 33 chr5 23172044 23172166 -129365093 - ID_B1 SINE B4 -19 205 85 3 761 343 374 23 15 chr5 23172533 23172666 -129364593 + RSINE1 SINE B4 3 136 -29 3 761 252 373 45 0 chr5 23172953 23173063 -129364196 + MIR3 SINE MIR 72 186 -22 3 761 240 271 77 9 chr5 23173090 23173239 -129364020 + MIRm SINE MIR 25 179 -29 3 761 236 266 53 38 chr5 23173239 23173372 -129363887 - L1MB5 LINE L1 0 6178 6044 3 761 314 303 6 170 chr5 23173385 23173556 -129363703 + ID_B1 SINE B4 82 224 0 3 761 497 234 124 79 chr5 23173607 23173686 -129363573 - L1MB5 LINE L1 -219 5955 5865 3 761 796 192 202 6 chr5 23173686 23173864 -129363395 - B3 SINE B2 -2 214 2 3 761 497 234 124 79 chr5 23173864 23174025 -129363234 - L1MB5 LINE L1 -310 5864 5704 3 761 273 262 45 45 chr5 23174181 23174269 -129362990 - B1F SINE Alu -13 136 49 3 761 1273 48 0 0 chr5 23174543 23174690 -129362569 + B1_Mm SINE Alu 1 147 0 3 761 527 153 105 128 chr5 23174690 23174847 -129362412 + B3 SINE B2 28 181 -14 3 761 765 174 40 34 chr5 23174847 23174996 -129362263 + B1_Mur4 SINE Alu 1 150 0 3 761 390 153 105 128 chr5 23174996 23175010 -129362249 + B2_Mm2 SINE B2 182 195 0 3 761 387 183 0 0 chr5 23175149 23175231 -129362028 + (CA)n Simple_repeat Simple_repeat 1 82 0 3 761 270 285 89 107 chr5 23175625 23175794 -129361465 + ID_B1 SINE B4 27 192 -32 3 761 308 260 62 0 chr5 23175753 23175849 -129361410 + BC1_Mm scRNA scRNA 22 123 -29 3 761 349 200 11 96 chr5 23175850 23175944 -129361315 + ID_B1 SINE B4 137 222 -2 3 761 234 81 0 0 chr5 23175961 23175998 -129361261 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 761 808 122 8 0 chr5 23176129 23176252 -129361007 + B2_Mm2 SINE B2 2 125 -70 3 761 401 0 20 0 chr5 23176282 23176331 -129360928 + (CATA)n Simple_repeat Simple_repeat 2 51 0 3 761 23 0 0 0 chr5 23176332 23176355 -129360904 + AT_rich Low_complexity Low_complexity 1 23 0 3 761 918 91 83 0 chr5 23176607 23176739 -129360520 + B1_Mus1 SINE Alu 3 145 -3 3 761 798 232 19 23 chr5 23176769 23176985 -129360274 + B3 SINE B2 1 215 -1 3 761 736 186 16 0 chr5 23177011 23177140 -129360119 + B1_Mus1 SINE Alu 18 148 0 3 761 26 82 0 0 chr5 23177248 23177309 -129359950 + AT_rich Low_complexity Low_complexity 1 61 0 3 761 303 283 53 9 chr5 23177435 23177549 -129359710 - B2_Mm2 SINE B2 -3 192 74 3 761 240 173 0 161 chr5 23177668 23177730 -129359529 + PB1D10 SINE Alu 60 111 -6 3 761 387 260 140 28 chr5 23178555 23178733 -129358526 + L1ME3 LINE L1 5767 5964 -198 3 761 942 117 0 21 chr5 23178802 23178942 -129358317 - B1_Mus2 SINE Alu -9 138 2 3 761 525 250 153 23 chr5 23179545 23179721 -129357538 - B3 SINE B2 -4 212 14 3 761 889 163 0 7 chr5 23179747 23179883 -129357376 - B1_Mur4 SINE Alu -11 139 5 3 761 367 241 35 35 chr5 23179972 23180058 -129357201 + RSINE1 SINE B4 2 87 -205 3 761 249 159 0 0 chr5 23180067 23180111 -129357148 + T-rich Low_complexity Low_complexity 1 44 0 3 761 469 189 31 62 chr5 23180111 23180207 -129357052 - 5S rRNA rRNA -4 117 25 3 761 23 68 0 0 chr5 23181361 23181405 -129355854 + GC_rich Low_complexity Low_complexity 1 44 0 3 761 203 91 21 64 chr5 23181846 23181893 -129355366 + C-rich Low_complexity Low_complexity 2 46 0 3 761 205 198 244 12 chr5 23182285 23182367 -129354892 + MIRc SINE MIR 18 118 -150 3 761 321 26 0 0 chr5 23182976 23183014 -129354245 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 761 268 273 49 29 chr5 23183025 23183127 -129354132 - L1MC4 LINE L1 -144 7898 7795 4 761 343 280 58 43 chr5 23183261 23183399 -129353860 - B1F SINE Alu 0 149 10 4 761 1154 64 0 0 chr5 23183543 23183684 -129353575 + B1_Mus2 SINE Alu 1 141 -6 4 761 468 0 0 0 chr5 23183686 23183738 -129353521 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 4 761 186 103 0 0 chr5 23183807 23183836 -129353423 + (A)n Simple_repeat Simple_repeat 1 29 0 4 761 317 257 95 49 chr5 23183871 23184025 -129353234 + L1MB5 LINE L1 5511 5670 -504 4 761 240 200 275 0 chr5 23184034 23184110 -129353149 + B1F2 SINE Alu 16 113 -36 4 761 1115 246 195 39 chr5 23184110 23184452 -129352807 + RLTR20C LTR ERVK 1 444 -90 4 761 405 0 0 0 chr5 23184452 23184497 -129352762 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 761 1115 239 204 38 chr5 23184497 23184598 -129352661 + RLTR20C LTR ERVK 445 534 0 4 761 255 292 0 81 chr5 23184701 23184789 -129352470 + B1F SINE Alu 5 89 -60 4 761 1590 180 146 3 chr5 23184789 23185124 -129352135 - ORR1C2 LTR MaLR -1 383 1 4 761 4735 201 111 29 chr5 23185128 23186390 -129350869 - ORR1C2-int LTR MaLR -4 1366 1 4 761 1179 152 300 37 chr5 23186393 23186538 -129350721 - ORR1C2 LTR MaLR -3 381 193 4 761 252 0 0 0 chr5 23186538 23186566 -129350693 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 761 513 0 0 0 chr5 23186566 23186622 -129350637 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 761 1179 152 300 37 chr5 23186622 23186775 -129350484 - ORR1C2 LTR MaLR -192 192 4 4 761 247 292 0 81 chr5 23186775 23186800 -129350459 + PB1D10 SINE Alu 89 109 -8 4 761 653 283 64 70 chr5 23186843 23187200 -129350059 + L1MB5 LINE L1 5814 6168 -6 4 761 1089 109 0 20 chr5 23187390 23187540 -129349719 - B1_Mur4 SINE Alu -3 147 1 4 761 1299 14 0 7 chr5 23187608 23187756 -129349503 - B1_Mus2 SINE Alu 0 147 1 4 761 344 230 137 34 chr5 23187850 23187967 -129349292 - ID_B1 SINE B4 -6 218 90 4 761 526 219 9 9 chr5 23187998 23188104 -129349155 - B1_Mus2 SINE Alu -40 107 2 4 761 761 214 150 0 chr5 23188105 23188278 -129348981 - B3 SINE B2 -17 199 1 4 761 1283 89 22 0 chr5 23188281 23188460 -129348799 - B2_Mm1t SINE B2 -10 183 1 4 761 690 220 0 43 chr5 23188504 23188642 -129348617 - B1_Mur1 SINE Alu -6 143 12 4 761 789 181 34 14 chr5 23188732 23188878 -129348381 + B1_Mur4 SINE Alu 1 149 -1 4 761 310 307 0 73 chr5 23188997 23189037 -129348222 + L1MEg LINE L1 1820 1855 -4229 4 761 1146 76 0 0 chr5 23189037 23189181 -129348078 + B1_Mm SINE Alu 2 145 -2 4 761 310 307 0 73 chr5 23189181 23189263 -129347996 + L1MEg LINE L1 1856 1933 -4151 4 761 606 63 0 0 chr5 23189647 23189726 -129347533 + (TA)n Simple_repeat Simple_repeat 2 80 0 4 761 351 252 28 28 chr5 23189748 23189854 -129347405 + PB1D10 SINE Alu 3 108 -9 4 761 1220 249 85 21 chr5 23190161 23190543 -129346716 - MLT1F1 LTR MaLR -49 530 100 4 761 207 0 0 0 chr5 23190561 23190584 -129346675 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 4 761 308 188 145 0 chr5 23190593 23190662 -129346597 - ID4_ SINE ID -3 80 2 4 761 317 283 59 29 chr5 23190698 23190800 -129346459 - ID_B1 SINE B4 -37 187 83 4 761 503 260 29 0 chr5 23190826 23190930 -129346329 - B1F SINE Alu -5 144 38 4 761 1046 98 0 0 chr5 23191245 23191388 -129345871 - B1_Mus1 SINE Alu 0 148 6 4 761 311 298 115 124 chr5 23191513 23191605 -129345654 - L1ME3 LINE L1 -166 5996 5905 4 761 854 112 90 26 chr5 23191605 23191761 -129345498 + Lx7 LINE L1 7531 7696 0 4 761 311 298 115 124 chr5 23191761 23191894 -129345365 - L1ME3 LINE L1 -258 5904 5774 4 761 1390 72 16 22 chr5 23191910 23192094 -129345165 - B2_Mm2 SINE B2 -10 185 3 4 761 348 83 0 0 chr5 23192145 23192193 -129345066 + (TATG)n Simple_repeat Simple_repeat 4 51 0 4 761 317 113 0 90 chr5 23192199 23192270 -129344989 - B2_Mm2 SINE B2 -107 109 47 4 761 1240 85 17 6 chr5 23192330 23192507 -129344752 - B2_Mm1t SINE B2 -14 179 1 4 761 427 317 119 15 chr5 23192513 23192715 -129344544 - Charlie1b DNA MER1_type -218 305 83 4 761 939 266 9 0 chr5 23192867 23193081 -129344178 - B3 SINE B2 0 216 1 4 761 278 236 10 110 chr5 23193123 23193214 -129344045 + PB1D9 SINE Alu 13 96 -24 4 761 508 240 120 0 chr5 23193214 23193339 -129343920 + B1F1 SINE Alu 2 141 -8 4 761 2038 168 9 3 chr5 23193860 23194206 -129343053 + ORR1B1 LTR MaLR 47 394 0 4 761 985 248 9 0 chr5 23194484 23194698 -129342561 + B3 SINE B2 1 216 0 4 761 3211 161 28 28 chr5 23194779 23195310 -129341949 + RMER2 LTR ERV1 4 537 -30 4 761 243 0 0 0 chr5 23195310 23195337 -129341922 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 761 3211 161 28 28 chr5 23195337 23195369 -129341890 + RMER2 LTR ERV1 538 567 0 4 761 309 268 82 0 chr5 23195572 23195669 -129341590 + B1F SINE Alu 14 118 -31 4 761 1012 119 6 6 chr5 23195874 23196052 -129341207 + (GAA)n Simple_repeat Simple_repeat 3 180 0 4 761 269 151 19 0 chr5 23196075 23196128 -129341131 + GA-rich Low_complexity Low_complexity 2 55 0 4 761 1383 17 0 17 chr5 23196128 23196305 -129340954 + (GAA)n Simple_repeat Simple_repeat 1 174 0 4 761 450 151 140 0 chr5 23196370 23196463 -129340796 + B1_Mur4 SINE Alu 45 150 0 4 761 377 229 164 48 chr5 23196558 23196723 -129340536 + MLT1C LTR MaLR 284 467 0 4 761 218 242 32 0 chr5 23196750 23196812 -129340447 + BC1_Mm scRNA scRNA 34 97 -55 4 761 799 174 0 51 chr5 23196981 23197138 -129340121 - B1_Mur4 SINE Alu 0 150 2 4 761 2965 38 0 14 chr5 23197285 23197636 -129339623 + ORR1A0 LTR MaLR 1 346 0 4 761 1778 181 219 13 chr5 23197655 23198118 -129339141 - RMER13B LTR ERVK 0 908 349 4 761 248 125 83 0 chr5 23198118 23198166 -129339093 + B3A SINE B2 1 52 -146 4 95 1802 311 60 55 chr5 23198167 23200202 -129337057 - MuRRS4-int LTR ERV1 -204 7352 4252 4 762 568 201 29 12 chr5 23200208 23200321 -129336938 - RLTR16 LTR ERVK -304 224 1 4 762 3036 263 32 7 chr5 23200484 23201382 -129335877 - MYSERV6-int LTR ERVK -92 5168 4367 4 762 485 215 75 0 chr5 23201378 23201525 -129335734 - MYSERV6-int LTR ERVK -1168 4092 3820 4 762 207 0 0 0 chr5 23201525 23201548 -129335711 + (T)n Simple_repeat Simple_repeat 1 23 0 4 762 2174 27 0 34 chr5 23201641 23201908 -129335351 - L1Md_F2 LINE L1 -10 6572 6315 4 762 4543 189 89 77 chr5 23201910 23202204 -129335055 - MYSERV6-int LTR ERVK -5585 3374 3118 4 762 1427 61 39 0 chr5 23202204 23202384 -129334875 + B2_Mm2 SINE B2 2 188 -7 4 762 4543 189 89 77 chr5 23202384 23203100 -129334159 - MYSERV6-int LTR ERVK -5842 3117 2357 4 762 1142 243 195 14 chr5 23203100 23203546 -129333713 - RLTR11A2 LTR ERVK 0 527 1 4 762 4543 189 89 77 chr5 23203546 23203799 -129333460 - MYSERV6-int LTR ERVK -6603 2356 2095 4 762 374 323 38 70 chr5 23204066 23204279 -129332980 - RLTR23 LTR ERV1 0 430 225 4 762 26 30 0 0 chr5 23205356 23205389 -129331870 + AT_rich Low_complexity Low_complexity 1 33 0 4 762 1245 48 0 0 chr5 23205389 23205536 -129331723 - B1_Mus1 SINE Alu 0 148 2 4 762 2208 68 0 20 chr5 23206396 23206697 -129330562 - RLTR4_Mm LTR ERV1 0 742 448 4 762 1713 78 70 8 chr5 23206671 23206929 -129330330 - RLTR4_Mm LTR ERV1 -468 274 1 4 762 62340 66 2 1 chr5 23206931 23214528 -129322731 - MuLV-int LTR ERV1 0 7606 1 4 762 2208 68 0 20 chr5 23214530 23214831 -129322428 - RLTR4_Mm LTR ERV1 0 742 448 4 762 1713 78 70 8 chr5 23214805 23215063 -129322196 - RLTR4_Mm LTR ERV1 -468 274 1 4 762 702 170 171 55 chr5 23215473 23215654 -129321605 + B3 SINE B2 15 216 0 4 762 348 169 138 46 chr5 23215673 23215760 -129321499 + B3 SINE B2 122 216 0 4 762 1289 109 5 35 chr5 23215955 23216155 -129321104 + B2_Mm2 SINE B2 2 195 0 4 762 1009 103 7 7 chr5 23216382 23216528 -129320731 - B1_Mus2 SINE Alu -1 146 1 4 762 1088 105 86 17 chr5 23217578 23217752 -129319507 - B2_Mm2 SINE B2 -8 187 2 4 762 218 95 71 0 chr5 23219026 23219068 -129318191 + T-rich Low_complexity Low_complexity 5 49 0 4 762 710 137 24 0 chr5 23219084 23219208 -129318051 - B1_Mur4 SINE Alu -15 135 9 4 762 388 306 139 10 chr5 23219286 23219494 -129317765 + MLT1C LTR MaLR 233 467 0 4 762 1318 86 27 11 chr5 23219861 23220049 -129317210 - B2_Mm2 SINE B2 -3 192 2 4 762 1029 244 191 16 chr5 23220209 23220513 -129316746 - ORR1D2 LTR MaLR -7 363 7 4 762 828 122 74 7 chr5 23220805 23220953 -129316306 - URR1A DNA MER1_type 0 226 69 4 762 227 298 192 60 chr5 23221376 23221430 -129315829 - B4A SINE B4 -84 208 3 4 762 583 252 39 8 chr5 23221430 23221558 -129315701 - B3A SINE B2 -64 134 3 4 762 182 253 69 69 chr5 23221591 23221693 -129315566 + L2 LINE L2 1809 1910 -1509 4 762 1100 240 268 3 chr5 23221870 23222183 -129315076 + RLTR33 LTR ERVK 197 592 -86 4 762 358 226 52 8 chr5 23222466 23222558 -129314701 - B4A SINE B4 -14 278 181 4 762 435 271 14 35 chr5 23222596 23222741 -129314518 - RLTR18B LTR ERVK -4 508 367 4 762 1134 78 0 0 chr5 23222745 23222887 -129314372 - B1_Mus1 SINE Alu -5 143 2 4 762 900 93 248 63 chr5 23222888 23223158 -129314101 + ORR1A3 LTR MaLR 8 326 0 4 762 1183 68 0 13 chr5 23223183 23223332 -129313927 + B1_Mus1 SINE Alu 1 147 -1 4 762 332 341 7 0 chr5 23223458 23223593 -129313666 - MIR SINE MIR -29 233 98 4 762 731 235 74 15 chr5 23223888 23224091 -129313168 + B3 SINE B2 1 215 -1 4 762 468 51 0 0 chr5 23224315 23224374 -129312885 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 762 525 243 28 0 chr5 23224383 23224490 -129312769 + PB1D7 SINE Alu 3 112 -8 4 762 1117 183 48 13 chr5 23224886 23225113 -129312146 - RLTR19A LTR ERVK 0 496 262 4 762 228 217 139 89 chr5 23225292 23225393 -129311866 - B4 SINE B4 0 292 187 4 762 1051 261 3 47 chr5 23225894 23226192 -129311067 + RLTR18B LTR ERVK 5 289 -223 4 762 2354 164 30 49 chr5 23226239 23226956 -129310303 - RMER17D2 LTR ERVK 0 809 25 4 762 455 106 226 4 chr5 23226973 23227077 -129310182 + B1_Mus2 SINE Alu 12 126 -21 4 762 190 55 0 53 chr5 23227081 23227119 -129310140 + (GGGGA)n Simple_repeat Simple_repeat 1 36 0 4 762 343 206 14 0 chr5 23227138 23227211 -129310048 + RLTR18B LTR ERVK 297 370 -142 4 762 1181 43 0 0 chr5 23227213 23227351 -129309908 + B1_Mus1 SINE Alu 1 138 -10 4 762 513 0 0 0 chr5 23227351 23227408 -129309851 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 4 762 303 28 0 0 chr5 23227922 23227958 -129309301 + (CAG)n Simple_repeat Simple_repeat 1 36 0 5 762 14212 118 40 16 chr5 23227978 23229042 -129308217 - RMER16-int LTR ERVK -1534 3872 2808 5 762 1270 71 37 27 chr5 23229042 23229229 -129308030 + B2_Mm2 SINE B2 3 191 -4 5 762 14212 127 42 18 chr5 23229229 23230504 -129306755 - RMER16-int LTR ERVK -2599 2807 1534 5 762 948 87 71 21 chr5 23230504 23230645 -129306614 - B1_Mus1 SINE Alu 0 148 1 5 762 2162 325 92 68 chr5 23230645 23231270 -129305989 - SRV_MM-int LTR ERVK -3240 2927 2319 5 762 1205 61 0 7 chr5 23231270 23231418 -129305841 - B1_Mm SINE Alu 0 147 1 5 762 2162 325 92 68 chr5 23231418 23231962 -129305297 - SRV_MM-int LTR ERVK -3849 2318 1729 5 762 390 169 26 0 chr5 23232031 23232108 -129305151 - RMER16 LTR ERVK -454 79 1 5 762 609 51 0 0 chr5 23232151 23232230 -129305029 + B2_Mm2 SINE B2 2 80 -115 5 762 3151 31 62 0 chr5 23232230 23232617 -129304642 + IAPLTR2a LTR ERVK 1 411 0 5 762 3516 66 20 35 chr5 23232618 23233360 -129303899 + IAPEz-int LTR ERVK 9 662 -5819 5 762 1001 50 0 0 chr5 23233360 23233479 -129303780 + IAPEz-int LTR ERVK 1359 1477 -5004 5 762 1902 93 0 0 chr5 23233480 23233726 -129303533 + IAPEz-int LTR ERVK 2252 2497 -5183 5 762 14651 62 8 4 chr5 23233725 23235542 -129301717 + IAPEz-int LTR ERVK 4656 6479 -2 5 762 3087 29 84 0 chr5 23235544 23235923 -129301336 + IAPLTR2a LTR ERVK 1 411 0 5 762 703 65 56 9 chr5 23235923 23236031 -129301228 + B2_Mm2 SINE B2 75 187 -8 5 762 701 75 0 9 chr5 23236077 23236185 -129301074 - BC1_Mm scRNA scRNA -45 107 1 5 762 1097 213 14 5 chr5 23236189 23236411 -129300848 - URR1B DNA MER1_type -1 224 1 5 762 645 182 34 34 chr5 23236455 23236603 -129300656 + B1_Mur3 SINE Alu 1 148 -1 5 762 645 247 82 0 chr5 23236627 23236797 -129300462 - B3 SINE B2 -6 210 27 5 762 244 225 0 53 chr5 23236798 23236813 -129300446 + polypurine Low_complexity Low_complexity 3 17 0 5 762 1681 31 0 0 chr5 23236813 23237004 -129300255 + B2_Mm1a SINE B2 2 192 -1 5 762 863 178 7 0 chr5 23237013 23237159 -129300100 + B1_Mus2 SINE Alu 1 147 0 5 762 244 225 0 53 chr5 23237159 23237208 -129300051 + polypurine Low_complexity Low_complexity 27 73 0 5 762 953 274 14 0 chr5 23237208 23237420 -129299839 + B3 SINE B2 1 215 -1 5 762 1300 14 0 0 chr5 23237443 23237590 -129299669 + B1_Mus2 SINE Alu 1 147 0 5 762 453 116 0 0 chr5 23237604 23237673 -129299586 + (GGA)n Simple_repeat Simple_repeat 2 70 0 5 762 356 280 15 39 chr5 23237830 23237960 -129299299 - LTR16A LTR ERVL -298 153 27 5 762 1111 69 78 36 chr5 23238161 23238179 -129299080 - B2_Mm1t SINE B2 -19 174 161 5 762 207 0 0 0 chr5 23238179 23238202 -129299057 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 762 1111 69 78 36 chr5 23238202 23238349 -129298910 - B2_Mm1t SINE B2 -33 160 2 5 762 652 200 56 21 chr5 23238349 23238492 -129298767 - B1_Mur1 SINE Alu 0 149 2 5 762 361 229 138 0 chr5 23238509 23238618 -129298641 - ID_B1 SINE B4 0 224 101 5 762 920 120 89 0 chr5 23238614 23238772 -129298487 - ORR1A4 LTR MaLR -157 172 1 5 762 283 279 116 30 chr5 23238772 23238995 -129298264 - MER31A LTR ERV1 -225 260 11 5 762 916 254 9 14 chr5 23238996 23239219 -129298040 + ID_B1 SINE B4 2 223 -1 5 762 1438 39 55 16 chr5 23240009 23240191 -129297068 - B2_Mm1a SINE B2 -3 190 2 5 762 814 108 203 0 chr5 23240240 23240388 -129296871 - Lx4A LINE L1 -9 7049 6872 5 762 35 92 0 0 chr5 23240454 23240552 -129296707 + AT_rich Low_complexity Low_complexity 1 98 0 5 762 1183 49 0 0 chr5 23240796 23240938 -129296321 + B1_Mus1 SINE Alu 1 142 -6 5 762 666 0 0 0 chr5 23240938 23241012 -129296247 + (GA)n Simple_repeat Simple_repeat 2 75 0 5 762 843 64 0 0 chr5 23241013 23241123 -129296136 + (GGAA)n Simple_repeat Simple_repeat 1 110 0 5 762 346 260 10 10 chr5 23241140 23241237 -129296022 + ID_B1 SINE B4 124 220 -4 5 762 677 183 280 40 chr5 23241354 23241604 -129295655 - MTD LTR MaLR -1 418 109 5 762 245 125 0 0 chr5 23241606 23241646 -129295613 + B1_Mus2 SINE Alu 2 41 -106 5 762 1191 41 14 0 chr5 23241845 23241990 -129295269 - B1_Mus2 SINE Alu 0 147 1 5 762 1009 201 33 5 chr5 23242106 23242316 -129294943 + B3 SINE B2 1 216 0 5 762 303 307 159 29 chr5 23242549 23242794 -129294465 + MER21B LTR ERV1 386 662 -201 5 762 4234 134 31 13 chr5 23243003 23243681 -129293578 + RLTR17 LTR ERVK 3 692 0 5 762 24 32 0 0 chr5 23243686 23243717 -129293542 + AT_rich Low_complexity Low_complexity 1 31 0 5 762 289 146 0 35 chr5 23243728 23243785 -129293474 - B2_Mm2 SINE B2 -94 101 47 5 762 1292 91 11 0 chr5 23243840 23244016 -129293243 - B2_Mm1t SINE B2 -14 179 2 5 762 1755 130 88 0 chr5 23245096 23245426 -129291833 - RMER15 LTR ERVL -155 420 62 5 762 2087 150 89 25 chr5 23245427 23245831 -129291428 + RLTR23 LTR ERV1 1 430 0 5 762 214 51 77 0 chr5 23245920 23245959 -129291300 + (GGAGA)n Simple_repeat Simple_repeat 4 45 0 5 762 441 0 0 0 chr5 23245993 23246042 -129291217 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 5 762 1136 69 6 12 chr5 23246042 23246203 -129291056 - B2_Mm1a SINE B2 -33 160 1 5 762 947 61 114 0 chr5 23246716 23246848 -129290411 - B1_Mus2 SINE Alu 0 147 1 5 762 398 90 18 102 chr5 23246907 23247015 -129290244 - B1_Mus2 SINE Alu -1 146 20 5 762 255 319 81 7 chr5 23247989 23248125 -129289134 + RSINE1 SINE B4 3 148 -17 5 762 1159 155 43 0 chr5 23248728 23248935 -129288324 - B3 SINE B2 0 216 1 5 762 1213 55 0 0 chr5 23249642 23249788 -129287471 - B1_Mus2 SINE Alu 0 147 2 5 762 531 241 21 0 chr5 23250161 23250306 -129286953 - B1_Mur3 SINE Alu -1 148 1 5 762 450 177 62 0 chr5 23250465 23250561 -129286698 - B1F1 SINE Alu 0 149 48 5 762 445 346 18 12 chr5 23250617 23250781 -129286478 + MTD LTR MaLR 1 165 -254 5 762 407 306 71 28 chr5 23250915 23251198 -129286061 + MLT2B2 LTR ERVL 185 562 0 5 762 261 0 0 0 chr5 23251996 23252025 -129285234 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 762 440 195 0 0 chr5 23252032 23252114 -129285145 - B1_Mur1 SINE Alu -8 141 60 5 762 950 225 15 0 chr5 23252631 23252831 -129284428 - B3 SINE B2 0 216 14 5 762 1479 82 5 5 chr5 23252862 23253057 -129284202 - B2_Mm2 SINE B2 0 195 1 5 762 619 122 145 8 chr5 23253103 23253227 -129284032 - B1_Mus2 SINE Alu -5 142 2 5 762 351 261 34 0 chr5 23254065 23254153 -129283106 + RSINE1 SINE B4 15 105 -60 5 762 24 0 0 0 chr5 23254995 23255019 -129282240 + AT_rich Low_complexity Low_complexity 1 24 0 5 762 1337 61 56 0 chr5 23255310 23255490 -129281769 + B2_Mm2 SINE B2 1 190 -5 5 762 273 256 77 11 chr5 23255841 23255932 -129281327 + B3A SINE B2 46 142 -56 5 762 386 325 15 69 chr5 23255950 23256152 -129281107 + Lx8 LINE L1 6979 7169 -304 5 762 1033 100 0 0 chr5 23257534 23257674 -129279585 + B1_Mus2 SINE Alu 1 140 -7 5 762 317 330 30 0 chr5 23257829 23257929 -129279330 - B4A SINE B4 -141 151 49 5 762 215 61 30 0 chr5 23257968 23258001 -129279258 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 762 216 0 0 0 chr5 23258224 23258248 -129279011 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 762 1768 75 4 0 chr5 23258297 23258550 -129278709 + MusHAL1 LINE L1 1833 2086 -626 5 762 339 25 0 0 chr5 23259022 23259062 -129278197 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 762 798 64 0 0 chr5 23259163 23259272 -129277987 - B1_Mm SINE Alu 0 147 39 5 762 487 162 27 76 chr5 23259272 23259403 -129277856 - B1_Mus2 SINE Alu -23 127 1 5 762 449 198 47 0 chr5 23259530 23259636 -129277623 - B1F2 SINE Alu -33 116 6 5 762 239 254 0 16 chr5 23259679 23259724 -129277535 - L1MB4 LINE L1 -227 5953 5909 5 762 1319 97 16 0 chr5 23259724 23259909 -129277350 - B2_Mm2 SINE B2 -7 188 1 5 762 239 254 0 16 chr5 23259909 23259927 -129277332 - L1MB4 LINE L1 -272 5908 5891 5 762 188 108 60 30 chr5 23260149 23260216 -129277043 + (CCCCAG)n Simple_repeat Simple_repeat 1 69 0 5 762 510 259 52 39 chr5 23261061 23261242 -129276017 - B3A SINE B2 -3 213 36 5 762 28 0 0 0 chr5 23261321 23261349 -129275910 + AT_rich Low_complexity Low_complexity 1 28 0 5 762 711 183 170 12 chr5 23261350 23261521 -129275738 + B3 SINE B2 1 198 -18 5 762 495 196 115 7 chr5 23262298 23262437 -129274822 + B3A SINE B2 45 198 0 5 762 943 228 35 5 chr5 23262454 23262657 -129274602 + B3 SINE B2 1 209 -7 5 762 318 293 67 0 chr5 23262712 23262787 -129274472 - ID4_ SINE ID -2 81 2 5 762 249 108 0 0 chr5 23262914 23262951 -129274308 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 762 212 188 0 20 chr5 23263388 23263437 -129273822 + A-rich Low_complexity Low_complexity 3 50 0 5 762 562 174 71 40 chr5 23263563 23263689 -129273570 - B1_Mur1 SINE Alu -6 143 14 5 762 316 270 17 43 chr5 23263928 23264044 -129273215 - PB1D10 SINE Alu 0 117 5 5 762 835 132 0 0 chr5 23264751 23264880 -129272379 - B1_Mur3 SINE Alu 0 149 21 5 762 247 243 28 28 chr5 23265065 23265137 -129272122 + CT-rich Low_complexity Low_complexity 4 75 0 5 762 267 361 92 0 chr5 23265771 23265901 -129271358 + RSINE1 SINE B4 15 156 -9 5 762 240 218 0 0 chr5 23266977 23267032 -129270227 + A-rich Low_complexity Low_complexity 1 55 0 5 762 933 35 0 0 chr5 23267177 23267290 -129269969 + (TTTC)n Simple_repeat Simple_repeat 1 113 0 5 762 1156 36 7 0 chr5 23267290 23267427 -129269832 - B1_Mur4 SINE Alu -12 138 1 5 762 808 160 34 20 chr5 23267468 23267615 -129269644 + B1_Mur3 SINE Alu 1 149 0 5 762 734 252 13 0 chr5 23267698 23267853 -129269406 - B3 SINE B2 -58 158 2 5 762 243 0 0 0 chr5 23268297 23268324 -129268935 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 762 192 40 0 0 chr5 23269658 23269683 -129267576 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 762 1166 30 0 0 chr5 23269684 23269819 -129267440 - B1_Mus1 SINE Alu -12 136 2 6 762 251 333 71 0 chr5 23271187 23271271 -129265988 - PB1D10 SINE Alu -26 91 2 6 762 1302 49 31 52 chr5 23271313 23271507 -129265752 + B2_Mm2 SINE B2 1 190 -5 6 762 23 0 0 0 chr5 23271598 23271621 -129265638 + AT_rich Low_complexity Low_complexity 1 23 0 6 762 694 193 52 0 chr5 23271774 23271909 -129265350 + B1_Mur4 SINE Alu 9 150 0 6 762 40 0 0 0 chr5 23271912 23271952 -129265307 + AT_rich Low_complexity Low_complexity 1 40 0 6 762 475 254 58 50 chr5 23271957 23272077 -129265182 + ID_B1 SINE B4 81 201 -23 6 762 347 163 182 23 chr5 23272575 23272663 -129264596 + B1_Mur1 SINE Alu 48 149 0 6 762 225 225 204 18 chr5 23272963 23273076 -129264183 + MER105 DNA DNA 21 154 -50 6 762 186 43 0 0 chr5 23273218 23273241 -129264018 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 6 762 207 0 0 0 chr5 23273979 23274002 -129263257 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 6 762 1126 77 6 0 chr5 23275254 23275410 -129261849 + B2_Mm2 SINE B2 2 158 -37 6 762 396 0 0 0 chr5 23275415 23275459 -129261800 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 6 762 212 135 0 75 chr5 23276085 23276125 -129261134 + B1F SINE Alu 6 42 -107 6 762 987 231 20 5 chr5 23276200 23276404 -129260855 + B3 SINE B2 2 208 -8 6 762 214 250 42 0 chr5 23276404 23276500 -129260759 + (TA)n Simple_repeat Simple_repeat 1 100 0 6 762 769 78 17 0 chr5 23276542 23276657 -129260602 - B1_Mus1 SINE Alu 0 148 32 6 762 432 266 120 2 chr5 23276835 23276996 -129260263 + B3 SINE B2 2 174 -19 6 762 823 195 127 46 chr5 23277382 23277619 -129259640 - RMER1B Other Other -2 1064 809 6 762 680 175 53 0 chr5 23277620 23277734 -129259525 + B1_Mur4 SINE Alu 23 142 -8 6 762 849 241 48 16 chr5 23277778 23277964 -129259295 - B3 SINE B2 -24 192 1 6 762 207 0 0 0 chr5 23277985 23278008 -129259251 + (T)n Simple_repeat Simple_repeat 1 23 0 6 762 1048 58 7 0 chr5 23278008 23278145 -129259114 - B1_Mus2 SINE Alu 0 147 10 6 762 598 179 19 9 chr5 23278373 23278480 -129258779 + PB1D9 SINE Alu 12 119 -1 6 762 1566 53 0 0 chr5 23278717 23278906 -129258353 + B2_Mm1a SINE B2 2 190 -3 6 762 846 253 116 8 chr5 23279212 23279471 -129257788 + B4 SINE B4 1 287 -5 6 762 488 239 60 35 chr5 23279485 23279651 -129257608 + ID_B1 SINE B4 66 223 -1 6 762 269 295 42 71 chr5 23279522 23279689 -129257570 - YREP_Mm Unknown Unknown -1505 307 146 6 762 323 329 62 84 chr5 23279689 23279780 -129257479 + ID SINE ID 2 88 -136 6 762 309 296 62 36 chr5 23279780 23279892 -129257367 + PB1D10 SINE Alu 2 116 -1 6 762 304 167 28 0 chr5 23279917 23279989 -129257270 + GA-rich Low_complexity Low_complexity 6 79 0 6 762 996 191 133 30 chr5 23280161 23280431 -129256828 + ORR1A4 LTR MaLR 30 327 -2 6 762 656 314 15 51 chr5 23280498 23280693 -129256566 + ID_B1 SINE B4 5 192 -32 6 762 243 207 172 0 chr5 23281099 23281157 -129256102 + PB1D10 SINE Alu 41 108 -9 6 762 581 251 100 118 chr5 23282039 23282235 -129255024 + B4A SINE B4 15 226 -66 6 762 698 268 40 20 chr5 23282235 23282437 -129254822 + B3 SINE B2 2 207 -9 6 762 581 251 100 118 chr5 23282437 23282520 -129254739 + B4A SINE B4 227 289 -3 6 762 357 24 0 0 chr5 23282530 23282572 -129254687 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 762 233 300 0 0 chr5 23283056 23283116 -129254143 + PB1D10 SINE Alu 58 117 0 6 762 838 171 108 0 chr5 23283336 23283512 -129253747 + B2_Mm2 SINE B2 1 195 0 6 762 234 291 22 44 chr5 23283546 23283636 -129253623 + PB1D10 SINE Alu 29 116 -1 6 762 198 103 0 0 chr5 23284028 23284057 -129253202 + (TCC)n Simple_repeat Simple_repeat 2 30 0 6 762 755 217 70 11 chr5 23284441 23284627 -129252632 + B3A SINE B2 1 197 -1 6 762 414 171 48 12 chr5 23284738 23284821 -129252438 + PB1D9 SINE Alu 34 119 -1 6 762 339 25 0 0 chr5 23284849 23284889 -129252370 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 762 694 251 101 15 chr5 23284952 23285150 -129252109 + B3 SINE B2 2 216 0 6 762 219 114 0 0 chr5 23285155 23285190 -129252069 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6 762 760 239 70 56 chr5 23285200 23285413 -129251846 + B3 SINE B2 1 216 0 6 762 287 325 23 11 chr5 23285720 23285731 -129251528 + ID SINE ID 70 81 -143 6 762 328 242 67 1 chr5 23285731 23285845 -129251414 + PB1D7 SINE Alu 1 120 0 6 762 398 340 45 81 chr5 23285843 23286064 -129251195 + B4A SINE B4 10 222 -70 6 762 319 279 125 9 chr5 23286064 23286176 -129251083 + RSINE1 SINE B4 1 125 -40 6 762 587 78 11 0 chr5 23286176 23286266 -129250993 + (CA)n Simple_repeat Simple_repeat 1 91 0 6 762 303 287 11 44 chr5 23286292 23286383 -129250876 - PB1D10 SINE Alu -54 93 6 6 762 820 187 31 31 chr5 23286425 23286618 -129250641 + B2_Mm2 SINE B2 3 195 0 6 762 362 226 214 0 chr5 23287235 23287319 -129249940 - PB1D9 SINE Alu -13 107 6 6 762 269 267 80 53 chr5 23287464 23287580 -129249679 - B1F1 SINE Alu -3 146 25 6 762 240 279 131 0 chr5 23287766 23287827 -129249432 + ID4 SINE ID 7 75 -8 6 762 225 0 0 0 chr5 23287827 23287852 -129249407 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 6 762 356 155 14 40 chr5 23288111 23288185 -129249074 + B1_Mur2 SINE Alu 68 139 -10 6 762 675 0 0 0 chr5 23288197 23288272 -129248987 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 762 359 193 86 54 chr5 23288305 23288398 -129248861 + PB1D10 SINE Alu 22 117 0 6 762 22 70 0 0 chr5 23289500 23289543 -129247716 + GC_rich Low_complexity Low_complexity 1 43 0 6 762 183 42 0 0 chr5 23289905 23289929 -129247330 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 6 762 409 324 0 0 chr5 23289952 23290060 -129247199 + ID_B1 SINE B4 102 209 -15 6 762 239 191 0 45 chr5 23290076 23290094 -129247165 + A-rich Low_complexity Low_complexity 1 17 0 6 762 1157 96 0 0 chr5 23290094 23290240 -129247019 + B1_Mus1 SINE Alu 3 148 0 6 762 239 191 0 45 chr5 23290240 23290287 -129246972 + A-rich Low_complexity Low_complexity 18 63 0 6 762 279 0 0 0 chr5 23290322 23290353 -129246906 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 762 523 186 52 0 chr5 23290397 23290494 -129246765 + MTE2b LTR MaLR 1 102 -277 6 762 289 286 26 0 chr5 23290535 23290612 -129246647 + URR1B DNA MER1_type 2 80 -145 6 762 507 286 96 121 chr5 23290641 23290714 -129246545 - B4A SINE B4 -12 280 224 6 762 491 277 44 25 chr5 23290714 23290873 -129246386 - RSINE1 SINE B4 -2 163 2 6 762 507 286 96 121 chr5 23290873 23291038 -129246221 - B4A SINE B4 -69 223 48 6 762 1595 175 98 53 chr5 23291122 23291478 -129245781 - ORR1D1 LTR MaLR -2 372 1 6 762 353 345 0 0 chr5 23291604 23291720 -129245539 - PB1D10 SINE Alu 0 117 2 6 762 26 0 0 0 chr5 23291839 23291865 -129245394 + AT_rich Low_complexity Low_complexity 1 26 0 6 762 921 221 14 37 chr5 23291865 23292081 -129245178 - B3 SINE B2 -1 215 5 6 762 844 191 7 0 chr5 23292099 23292246 -129245013 - B1_Mur2 SINE Alu -1 148 1 6 762 297 211 40 0 chr5 23292258 23292334 -129244925 - B3 SINE B2 0 216 138 6 762 181 98 49 0 chr5 23292358 23292399 -129244860 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 762 346 228 82 52 chr5 23292749 23292846 -129244413 + MT2B LTR ERVL 165 264 -337 6 762 834 39 0 0 chr5 23292776 23292879 -129244380 + B1_Mus2 SINE Alu 43 145 -2 6 762 477 0 0 0 chr5 23292879 23292932 -129244327 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 6 762 287 211 88 50 chr5 23292999 23293079 -129244180 - RSINE1 SINE B4 -73 92 10 6 762 282 280 118 0 chr5 23293074 23293167 -129244092 - B1F SINE Alu -8 141 38 6 762 475 264 0 54 chr5 23293229 23293341 -129243918 - ID_B1 SINE B4 -41 183 78 6 762 375 41 0 0 chr5 23294712 23294761 -129242498 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 762 288 362 9 9 chr5 23294761 23294858 -129242401 - ID_B1 SINE B4 -11 213 116 6 762 1237 100 28 6 chr5 23294893 23295074 -129242185 - B2_Mm2 SINE B2 -8 187 3 6 762 486 300 64 15 chr5 23295202 23295405 -129241854 + B3 SINE B2 4 216 0 6 762 28 0 0 0 chr5 23295414 23295442 -129241817 + AT_rich Low_complexity Low_complexity 1 28 0 6 762 661 279 110 16 chr5 23295575 23295757 -129241502 + B3 SINE B2 15 213 -3 6 762 227 115 0 37 chr5 23295809 23295863 -129241396 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 6 762 242 212 41 96 chr5 23296034 23296050 -129241209 + B4 SINE B4 77 88 -204 6 762 438 287 28 0 chr5 23296050 23296158 -129241101 + PB1D7 SINE Alu 1 111 -9 6 762 615 217 96 60 chr5 23296256 23296423 -129240836 - B3 SINE B2 -41 175 3 6 762 1255 99 10 68 chr5 23296445 23296651 -129240608 + B2_Mm2 SINE B2 2 195 0 6 762 790 203 7 53 chr5 23296658 23296809 -129240450 + ID_B1 SINE B4 78 221 -3 6 762 438 212 0 23 chr5 23297052 23297139 -129240120 - ID_B1 SINE B4 -1 223 139 6 762 657 250 39 0 chr5 23297410 23297566 -129239693 - RSINE1 SINE B4 0 165 4 6 762 282 333 0 0 chr5 23297589 23297670 -129239589 - ID4_ SINE ID -2 81 1 7 762 428 259 99 26 chr5 23297791 23297942 -129239317 - RSINE1 SINE B4 0 165 4 7 762 624 14 0 0 chr5 23297966 23298039 -129239220 + (TATG)n Simple_repeat Simple_repeat 2 74 0 7 762 349 271 46 109 chr5 23298039 23298213 -129239046 - RSINE1 SINE B4 -2 163 1 7 762 329 272 48 19 chr5 23298234 23298339 -129238920 - PB1D7 SINE Alu -9 111 4 7 762 390 287 74 34 chr5 23298427 23298575 -129238684 + ID_B1 SINE B4 23 176 -48 7 762 267 31 0 0 chr5 23298604 23298636 -129238623 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 762 284 244 56 0 chr5 23298910 23299000 -129238259 - B1_Mm SINE Alu -52 95 1 7 762 504 86 0 0 chr5 23299292 23299362 -129237897 + (TTA)n Simple_repeat Simple_repeat 2 71 0 7 762 852 144 222 0 chr5 23299362 23299529 -129237730 - B3 SINE B2 -12 204 1 7 762 253 257 43 0 chr5 23299969 23300039 -129237220 - ID2 SINE ID -9 74 2 7 762 516 272 14 35 chr5 23300687 23300828 -129236431 + ID_B1 SINE B4 87 224 0 7 762 597 304 122 0 chr5 23301469 23301650 -129235609 - ID_B1 SINE B4 -1 223 21 7 762 319 113 0 0 chr5 23301650 23301703 -129235556 - MTD LTR MaLR -121 298 246 7 762 2100 129 102 11 chr5 23302266 23302619 -129234640 - ORR1B1 LTR MaLR -9 385 1 7 762 603 80 5 9 chr5 23302731 23302833 -129234426 - B1_Mus2 SINE Alu 0 147 21 7 762 342 214 29 0 chr5 23302810 23302880 -129234379 - MTD LTR MaLR -14 405 334 7 762 591 249 156 36 chr5 23302869 23303061 -129234198 - MTD LTR MaLR -201 218 4 7 762 657 189 13 40 chr5 23303361 23303510 -129233749 - B1_Mur1 SINE Alu -4 145 1 7 762 339 291 44 26 chr5 23303657 23303770 -129233489 + PB1D10 SINE Alu 3 117 0 7 762 322 278 30 101 chr5 23304028 23304196 -129233063 + YREP_Mm Unknown Unknown 169 324 -1488 7 762 818 256 34 58 chr5 23304057 23304264 -129232995 - ID_B1 SINE B4 -11 213 12 7 762 530 54 0 13 chr5 23304413 23304488 -129232771 + (TATG)n Simple_repeat Simple_repeat 3 76 0 7 762 1166 215 68 16 chr5 23304601 23304851 -129232408 - B4A SINE B4 -22 270 8 7 762 507 243 27 0 chr5 23304864 23304975 -129232284 - ID_B1 SINE B4 -4 220 107 7 762 1297 71 55 6 chr5 23305005 23305188 -129232071 - B2_Mm2 SINE B2 -2 193 2 7 762 638 221 91 49 chr5 23305192 23305296 -129231963 - B1_Mur1 SINE Alu 0 149 39 7 762 8719 21 5 0 chr5 23305296 23306269 -129230990 - RLTR13A3 LTR ERVK 0 978 1 7 762 638 221 91 49 chr5 23306269 23306307 -129230952 - B1_Mur1 SINE Alu -111 38 1 7 762 465 43 116 0 chr5 23306893 23306962 -129230297 - B1_Mus2 SINE Alu 0 147 71 7 762 1331 96 0 6 chr5 23307129 23307308 -129229951 - B2_Mm2 SINE B2 -15 180 3 7 762 756 246 123 0 chr5 23307360 23307547 -129229712 + B3 SINE B2 1 210 -6 7 762 337 333 23 52 chr5 23307534 23307550 -129229709 + B4A SINE B4 77 138 -154 7 762 925 119 8 0 chr5 23307550 23307684 -129229575 + B1_Mur4 SINE Alu 10 144 -6 7 762 337 333 23 52 chr5 23307684 23307708 -129229551 + B4A SINE B4 139 245 -47 7 762 575 250 50 7 chr5 23307743 23307884 -129229375 + B1F1 SINE Alu 1 147 -2 7 762 367 267 29 10 chr5 23307897 23307999 -129229260 + ID_B1 SINE B4 70 173 -51 7 762 482 202 57 19 chr5 23307912 23308018 -129229241 + PB1D10 SINE Alu 7 116 -1 7 762 726 258 50 5 chr5 23308246 23308464 -129228795 - B4A SINE B4 -60 232 5 7 762 1738 16 0 0 chr5 23308552 23308744 -129228515 + B2_Mm1a SINE B2 2 193 0 7 762 209 325 0 13 chr5 23309059 23309137 -129228122 + C-rich Low_complexity Low_complexity 6 82 0 7 762 829 150 16 0 chr5 23309327 23309466 -129227793 - B1_Mur4 SINE Alu -8 142 1 7 762 1060 168 21 5 chr5 23309474 23309666 -129227593 - B2_Mm2 SINE B2 0 195 1 7 762 267 259 0 141 chr5 23309693 23309792 -129227467 - B1F2 SINE Alu -64 85 1 7 762 296 250 0 101 chr5 23309706 23309795 -129227464 - ID_B1 SINE B4 -66 158 79 7 762 189 0 0 0 chr5 23310183 23310204 -129227055 + (T)n Simple_repeat Simple_repeat 1 21 0 7 762 1213 68 0 0 chr5 23310204 23310351 -129226908 - B1_Mus2 SINE Alu 0 147 1 7 762 240 111 0 0 chr5 23310456 23310492 -129226767 + (T)n Simple_repeat Simple_repeat 1 36 0 7 762 1240 55 0 0 chr5 23310492 23310638 -129226621 - B1_Mus2 SINE Alu 0 147 2 7 762 812 227 141 80 chr5 23310643 23310892 -129226367 + B4A SINE B4 29 292 0 7 762 770 155 18 6 chr5 23310912 23311081 -129226178 + (CA)n Simple_repeat Simple_repeat 1 171 0 7 762 1953 138 78 12 chr5 23311822 23312166 -129225093 - ORR1B2 LTR MaLR 0 367 1 7 762 869 219 34 0 chr5 23312324 23312502 -129224757 - B3 SINE B2 -6 210 27 7 762 961 41 0 0 chr5 23312531 23312654 -129224605 - L1Md_T LINE L1 0 6582 6460 7 762 337 214 56 0 chr5 23313061 23313150 -129224109 - PB1D9 SINE Alu -1 119 26 7 762 1085 51 65 0 chr5 23313923 23314061 -129223198 + B1_Mus1 SINE Alu 2 148 0 7 762 183 129 0 0 chr5 23314061 23314092 -129223167 + (A)n Simple_repeat Simple_repeat 1 31 0 7 762 334 250 14 0 chr5 23314225 23314297 -129222962 - ID4 SINE ID -8 75 3 7 762 568 275 25 18 chr5 23314383 23314546 -129222713 + RSINE1 SINE B4 2 165 0 7 762 639 289 46 15 chr5 23314728 23314925 -129222334 + ID_B1 SINE B4 13 215 -9 7 762 517 256 26 0 chr5 23315035 23315152 -129222107 - RSINE1 SINE B4 -36 129 10 7 762 230 320 107 0 chr5 23315278 23315353 -129221906 - ID4 SINE ID 0 83 1 7 762 744 208 28 7 chr5 23316098 23316243 -129221016 - B1_Mur1 SINE Alu 0 149 2 7 762 239 326 32 65 chr5 23316883 23317037 -129220222 - YREP_Mm Unknown Unknown -1484 328 180 7 762 706 232 28 0 chr5 23316899 23317041 -129220218 + ID_B1 SINE B4 79 224 0 7 762 499 238 192 18 chr5 23317075 23317242 -129220017 + B3 SINE B2 1 196 -2 7 762 285 216 133 94 chr5 23317353 23317481 -129219778 + B1_Mm SINE Alu 1 133 -14 7 762 414 241 0 34 chr5 23318215 23318464 -129218795 + (TCTCTG)n Simple_repeat Simple_repeat 1 240 0 7 762 231 267 0 19 chr5 23318598 23318745 -129218514 + (TCTCTG)n Simple_repeat Simple_repeat 1 144 0 7 762 270 292 0 22 chr5 23318756 23318938 -129218321 + (TG)n Simple_repeat Simple_repeat 1 178 0 7 762 237 317 0 0 chr5 23319048 23319228 -129218031 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 762 294 322 51 0 chr5 23319762 23319880 -129217379 + B1F2 SINE Alu 1 124 -25 7 762 357 257 99 18 chr5 23319900 23320011 -129217248 + B1F SINE Alu 30 149 0 7 762 740 310 132 13 chr5 23320087 23320610 -129216649 + L1MB8 LINE L1 5534 6118 -60 7 762 683 272 6 6 chr5 23320624 23320783 -129216476 - RSINE1 SINE B4 -4 161 3 7 762 458 252 47 17 chr5 23320998 23321141 -129216118 - PB1D7 SINE Alu -3 146 2 7 762 595 0 27 0 chr5 23321142 23321217 -129216042 + (TG)n Simple_repeat Simple_repeat 1 77 0 7 762 523 254 148 0 chr5 23321227 23321369 -129215890 - RSINE1 SINE B4 -2 163 1 7 762 1642 26 10 5 chr5 23322085 23322277 -129214982 + B2_Mm1t SINE B2 1 193 0 7 762 25 31 0 0 chr5 23322356 23322388 -129214871 + AT_rich Low_complexity Low_complexity 1 32 0 7 762 987 172 75 10 chr5 23323090 23323290 -129213969 + B3 SINE B2 1 213 -3 7 762 1180 55 7 0 chr5 23323751 23323897 -129213362 + B1_Mus2 SINE Alu 1 147 0 7 762 312 259 79 29 chr5 23324373 23324512 -129212747 - B1F2 SINE Alu 0 149 4 7 762 21 0 0 0 chr5 23324587 23324608 -129212651 + AT_rich Low_complexity Low_complexity 1 21 0 7 762 257 246 62 0 chr5 23324631 23324696 -129212563 - RSINE1 SINE B4 -37 128 60 7 762 622 227 50 0 chr5 23324754 23324895 -129212364 - B1_Mur1 SINE Alu 0 149 2 7 762 397 154 48 117 chr5 23325428 23325531 -129211728 + MT2B LTR ERVL 169 264 -337 7 762 985 25 0 0 chr5 23325439 23325557 -129211702 + B1_Mus1 SINE Alu 22 139 -9 7 762 245 27 54 0 chr5 23325557 23325594 -129211665 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 762 399 231 17 92 chr5 23325967 23326086 -129211173 + PB1 SINE Alu 11 120 0 7 762 571 250 216 31 chr5 23326250 23326477 -129210782 - B4 SINE B4 -1 291 23 7 762 1727 21 0 0 chr5 23326511 23326704 -129210555 - B2_Mm1t SINE B2 0 193 1 7 762 1516 68 5 0 chr5 23326710 23326902 -129210357 - B2_Mm1a SINE B2 0 193 1 7 762 1266 34 0 0 chr5 23326954 23327101 -129210158 - B1_Mus2 SINE Alu 0 147 1 7 762 447 19 0 0 chr5 23327186 23327238 -129210021 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 762 211 288 121 0 chr5 23327238 23327304 -129209955 - ID2 SINE ID -8 75 2 7 762 745 192 155 0 chr5 23327479 23327666 -129209593 + B3 SINE B2 1 216 0 7 762 1149 65 0 0 chr5 23327669 23327807 -129209452 + B1_Mus1 SINE Alu 1 138 -10 7 762 704 166 110 22 chr5 23327868 23328004 -129209255 + B1_Mur4 SINE Alu 2 149 -1 7 762 311 204 318 0 chr5 23328495 23328583 -129208676 - PB1D9 SINE Alu 0 120 5 7 762 399 318 55 35 chr5 23328736 23328938 -129208321 + B4 SINE B4 1 206 -86 7 762 1703 16 5 0 chr5 23329474 23329665 -129207594 + B2_Mm1t SINE B2 2 193 0 7 762 1151 68 0 0 chr5 23329681 23329827 -129207432 + B1_Mus1 SINE Alu 2 147 -1 7 762 242 261 14 14 chr5 23330378 23330448 -129206811 - MER5B DNA MER1_type -105 73 4 8 95 610 262 84 34 chr5 23330788 23330966 -129206293 + B3A SINE B2 1 187 -11 8 763 1385 63 0 6 chr5 23330988 23331163 -129206096 + B2_Mm2 SINE B2 1 174 -21 8 763 215 0 0 62 chr5 23331163 23331195 -129206064 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 763 773 30 20 0 chr5 23331249 23331348 -129205911 + (GAAA)n Simple_repeat Simple_repeat 2 102 0 8 763 1439 130 159 7 chr5 23331387 23331675 -129205584 + ORR1A3 LTR MaLR 1 338 -8 8 763 836 168 36 0 chr5 23331766 23331903 -129205356 - B1_Mus1 SINE Alu -1 147 6 8 763 386 304 65 129 chr5 23331767 23331937 -129205322 - B4 SINE B4 -69 223 65 8 763 1223 41 0 0 chr5 23331977 23332123 -129205136 + B1_Mus2 SINE Alu 2 147 0 8 763 1200 233 130 12 chr5 23332135 23332474 -129204785 - MTE2a LTR MaLR 0 379 1 8 763 269 140 58 39 chr5 23332507 23332559 -129204700 + RMER20A LTR ERVK 4 56 -460 8 763 2395 176 55 7 chr5 23332856 23333292 -129203967 + RMER20A LTR ERVK 47 503 -13 8 763 634 293 12 31 chr5 23333390 23333552 -129203707 + ID_B1 SINE B4 64 222 -2 8 763 487 65 0 0 chr5 23333566 23333628 -129203631 + MTC LTR MaLR 1 62 -359 8 763 4157 106 104 3 chr5 23333628 23334272 -129202987 + RMER19A LTR ERVK 1 709 -28 8 763 1192 55 7 0 chr5 23334297 23334442 -129202817 + B1_Mm SINE Alu 2 147 0 8 763 198 288 45 0 chr5 23334581 23334647 -129202612 - MIR SINE MIR -74 188 120 8 763 252 222 147 53 chr5 23335328 23335423 -129201836 - MLT1F LTR MaLR -176 372 269 8 763 399 180 226 16 chr5 23335464 23335588 -129201671 - RCHARR1 DNA MER1_type 0 974 825 8 763 521 296 21 7 chr5 23335586 23335729 -129201530 + ID_B1 SINE B4 79 223 -1 8 763 376 35 35 0 chr5 23336252 23336310 -129200949 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 8 763 1100 74 0 0 chr5 23336310 23336445 -129200814 - B1_Mm SINE Alu -12 135 1 8 763 784 55 18 0 chr5 23336453 23336563 -129200696 + (TC)n Simple_repeat Simple_repeat 1 112 0 8 763 1225 48 7 0 chr5 23338369 23338515 -129198744 - B1_Mus2 SINE Alu 0 147 1 8 763 342 289 0 20 chr5 23339038 23339137 -129198122 + Lx9 LINE L1 6722 6818 -826 8 763 315 122 0 0 chr5 23339301 23339350 -129197909 + (CCA)n Simple_repeat Simple_repeat 1 49 0 8 763 279 337 22 0 chr5 23340249 23340338 -129196921 + MIR SINE MIR 89 179 -83 8 763 281 209 0 165 chr5 23340407 23340460 -129196799 - L1_Rod LINE L1 -2462 3385 3339 8 763 1087 64 122 0 chr5 23340460 23340616 -129196643 - B2_Mm2 SINE B2 -19 176 2 8 763 281 209 0 165 chr5 23340616 23340665 -129196594 - L1_Rod LINE L1 -2509 3338 3300 8 763 184 98 38 38 chr5 23340896 23340949 -129196310 + T-rich Low_complexity Low_complexity 2 54 0 8 763 1109 77 0 0 chr5 23340949 23341092 -129196167 - B1_Mus2 SINE Alu 0 147 5 8 763 1326 92 27 0 chr5 23341409 23341593 -129195666 + B2_Mm2 SINE B2 3 191 -4 8 763 696 186 32 0 chr5 23342015 23342139 -129195120 - U1 snRNA snRNA -37 128 1 8 763 568 308 81 106 chr5 23342166 23342659 -129194600 + Lx8 LINE L1 6992 7472 -1 8 763 1264 27 0 13 chr5 23342915 23343064 -129194195 - B1_Mus2 SINE Alu 0 147 1 8 763 297 188 61 30 chr5 23343238 23343304 -129193955 - ID4 SINE ID -13 70 3 8 763 1022 69 26 65 chr5 23343584 23343738 -129193521 - B1_Mus1 SINE Alu 0 148 1 8 763 183 262 16 32 chr5 23344123 23344186 -129193073 + MER5A DNA MER1_type 80 141 -48 8 763 1257 34 0 0 chr5 23344254 23344401 -129192858 + B1_Mm SINE Alu 1 147 0 8 763 333 0 0 0 chr5 23344590 23344627 -129192632 + (CCA)n Simple_repeat Simple_repeat 1 37 0 8 763 601 182 66 0 chr5 23344640 23344761 -129192498 + B1_Mur3 SINE Alu 1 129 -20 8 763 381 294 99 99 chr5 23345275 23345437 -129191822 + RSINE1 SINE B4 4 165 0 8 763 1152 68 0 13 chr5 23346215 23346354 -129190905 + B1_Mus1 SINE Alu 2 140 -8 8 763 189 0 0 0 chr5 23346354 23346375 -129190884 + (CAA)n Simple_repeat Simple_repeat 2 22 0 8 763 956 40 160 0 chr5 23346396 23346521 -129190738 + B1_Mm SINE Alu 3 147 0 8 763 189 74 0 0 chr5 23346523 23346550 -129190709 + (A)n Simple_repeat Simple_repeat 1 27 0 8 763 1224 48 0 0 chr5 23346771 23346917 -129190342 + B1_Mus2 SINE Alu 2 147 0 8 763 216 0 0 0 chr5 23346917 23346941 -129190318 + (A)n Simple_repeat Simple_repeat 1 24 0 8 763 331 83 0 0 chr5 23347029 23347077 -129190182 + B1_Mus2 SINE Alu 100 147 0 8 763 22 0 0 0 chr5 23347966 23347988 -129189271 + AT_rich Low_complexity Low_complexity 1 22 0 8 763 243 333 11 56 chr5 23348240 23348329 -129188930 + PB1D10 SINE Alu 5 89 -28 8 763 1187 41 0 14 chr5 23348521 23348669 -129188590 + B1_Mus2 SINE Alu 1 146 -1 8 763 291 291 27 80 chr5 23348778 23348890 -129188369 + PB1D10 SINE Alu 1 106 -11 8 763 319 277 10 10 chr5 23350140 23350242 -129187017 - PB1D9 SINE Alu -2 118 17 8 763 287 254 0 16 chr5 23351249 23351313 -129185946 + ZP3AR Satellite Satellite 20 82 -130 8 763 613 122 0 20 chr5 23351273 23351349 -129185910 + BC1_Mm scRNA scRNA 1 76 -76 8 763 1098 52 23 23 chr5 23351349 23351526 -129185733 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 8 763 613 122 0 20 chr5 23351526 23351549 -129185710 + BC1_Mm scRNA scRNA 77 98 -54 8 763 773 160 7 0 chr5 23351553 23351697 -129185562 + GA-rich Low_complexity Low_complexity 3 147 0 8 763 1214 68 0 0 chr5 23351712 23351859 -129185400 + B1_Mus2 SINE Alu 1 147 0 8 763 207 0 0 0 chr5 23351997 23352020 -129185239 + (TTA)n Simple_repeat Simple_repeat 2 24 0 8 763 623 118 28 32 chr5 23352020 23352238 -129185021 + (TG)n Simple_repeat Simple_repeat 1 216 0 8 763 429 168 39 0 chr5 23352259 23352414 -129184845 + (TG)n Simple_repeat Simple_repeat 2 162 0 8 763 212 100 25 0 chr5 23352435 23352475 -129184784 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 763 466 169 39 7 chr5 23352579 23352872 -129184387 + (TG)n Simple_repeat Simple_repeat 1 302 0 8 763 400 230 169 49 chr5 23352873 23353015 -129184244 - RSINE1 SINE B4 0 165 7 8 763 273 328 26 47 chr5 23353279 23353418 -129183841 + B4A SINE B4 1 128 -164 8 763 1233 243 30 51 chr5 23353418 23353752 -129183507 + RLTR18B LTR ERVK 1 327 -185 8 763 546 165 200 0 chr5 23353759 23353874 -129183385 + B1_Mus2 SINE Alu 9 146 -1 8 763 253 286 0 0 chr5 23353874 23353896 -129183363 + G-rich Low_complexity Low_complexity 6 27 0 8 763 4201 59 76 0 chr5 23353896 23354420 -129182839 + LTRIS2 LTR ERV1 1 564 0 8 763 253 286 0 0 chr5 23354420 23354460 -129182799 + G-rich Low_complexity Low_complexity 28 67 0 8 763 1569 104 101 0 chr5 23354563 23354831 -129182428 + RLTR10A LTR ERVK 117 411 0 8 763 687 272 11 27 chr5 23354831 23355016 -129182243 + RLTR18B LTR ERVK 327 508 -4 8 763 430 224 72 72 chr5 23355040 23355165 -129182094 + B4A SINE B4 168 292 0 8 763 1118 238 113 10 chr5 23355425 23355738 -129181521 - RLTR33 LTR ERVK -86 592 197 8 763 210 260 40 0 chr5 23355915 23355965 -129181294 - L2 LINE L2 -1509 1910 1859 8 763 662 302 18 12 chr5 23356051 23356222 -129181037 + B3A SINE B2 3 174 -24 8 763 1186 112 39 17 chr5 23357147 23357328 -129179931 + B2_Mm2 SINE B2 3 187 -8 8 763 319 171 151 47 chr5 23358788 23358874 -129178385 - B3 SINE B2 0 216 122 8 763 732 157 164 60 chr5 23358894 23359077 -129178182 - B3 SINE B2 0 216 15 8 763 675 178 93 0 chr5 23359949 23360067 -129177192 + B1_Mus1 SINE Alu 1 129 -19 8 763 304 265 132 97 chr5 23360407 23360567 -129176692 + RLTR41 LTR ERV1 118 293 -153 8 763 1496 58 11 0 chr5 23360567 23360757 -129176502 + B2_Mm1a SINE B2 2 193 0 8 763 304 265 132 97 chr5 23360757 23360884 -129176375 + RLTR41 LTR ERV1 294 415 -31 8 763 380 205 216 35 chr5 23361115 23361231 -129176028 + MERVK26-int LTR ERVK 220 356 -6563 8 763 2203 344 53 21 chr5 23361901 23363021 -129174238 + MERVK26-int LTR ERVK 1271 2425 -4494 8 763 201 247 21 124 chr5 23363058 23363155 -129174104 + L3b LINE CR1 106 192 -290 8 763 567 297 43 16 chr5 23363155 23363382 -129173877 + MERVK26-int LTR ERVK 2584 2721 -4198 8 763 568 203 106 28 chr5 23363533 23363675 -129173584 + RMER17A-int LTR ERVK 1268 1420 -308 8 763 1482 267 174 76 chr5 23363947 23364725 -129172534 + RMER13A LTR ERVK 5 858 -2 8 763 239 238 248 0 chr5 23365006 23365107 -129172152 + RMER20A LTR ERVK 391 516 0 8 763 1066 276 11 0 chr5 23365198 23365459 -129171800 + RMER20A LTR ERVK 136 399 -117 8 763 1000 358 7 7 chr5 23365542 23365947 -129171312 + MERVK26-int LTR ERVK 1224 1628 -5291 8 763 998 284 69 39 chr5 23365943 23366379 -129170880 + MERVK26-int LTR ERVK 5041 5489 -1430 8 763 484 200 45 18 chr5 23366606 23366718 -129170541 + MERVK26-int LTR ERVK 5856 5970 -949 8 763 667 191 6 56 chr5 23366896 23366919 -129170340 + ID_B1 SINE B4 72 222 0 8 763 1121 37 0 0 chr5 23366919 23367055 -129170204 + B1_Mus1 SINE Alu 13 148 0 8 763 470 303 70 24 chr5 23367134 23367347 -129169912 + MERVK26-int LTR ERVK 6669 6891 -28 8 763 241 171 0 0 chr5 23367832 23367873 -129169386 - B2_Mm2 SINE B2 -154 41 1 8 763 741 226 13 33 chr5 23367898 23368049 -129169210 - B1_Mur3 SINE Alu 0 149 2 8 763 456 269 30 71 chr5 23368049 23368066 -129169193 - ID_B1 SINE B4 -1 223 63 8 763 460 299 106 18 chr5 23368073 23368243 -129169016 + MER20 DNA MER1_type 35 219 0 8 763 1227 54 0 0 chr5 23368953 23369100 -129168159 + B1_Mm SINE Alu 1 147 0 8 763 262 329 0 34 chr5 23370023 23370111 -129167148 - ID_B1 SINE B4 -60 164 80 8 763 568 156 137 23 chr5 23370117 23370248 -129167011 - B1_Mus2 SINE Alu 0 147 2 8 763 261 200 70 14 chr5 23370265 23370336 -129166923 - ID4_ SINE ID -7 76 2 8 763 224 245 0 54 chr5 23370964 23371020 -129166239 + MIR SINE MIR 110 162 -100 8 763 239 291 72 57 chr5 23371093 23371214 -129166045 - B1_Mus1 SINE Alu -19 130 11 8 763 403 223 21 21 chr5 23372116 23372212 -129165047 + MTD LTR MaLR 1 96 -323 8 763 765 246 106 5 chr5 23372229 23372437 -129164822 + MTD LTR MaLR 180 408 -11 8 763 495 169 35 0 chr5 23373473 23373569 -129163690 - B1_Mur2 SINE Alu -2 147 49 8 763 13210 79 1 8 chr5 23373570 23376100 -129161159 + L1_Mus1 LINE L1 4056 6565 -2 8 763 320 329 0 0 chr5 23376100 23376170 -129161089 - PB1D9 SINE Alu -49 71 2 9 763 2877 89 142 0 chr5 23377028 23377491 -129159768 - RLTR47_MM LTR ERV1 0 532 4 9 763 239 50 0 48 chr5 23377621 23377663 -129159596 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 9 763 367 369 83 56 chr5 23378553 23378877 -129158382 + LTR16E1 LTR ERVL 205 537 -1 9 763 253 331 87 47 chr5 23379254 23379381 -129157878 - MIR SINE MIR -50 212 81 9 763 1219 50 0 0 chr5 23379545 23379686 -129157573 - B1_Mus1 SINE Alu -7 141 1 9 763 510 304 45 17 chr5 23380940 23381117 -129156142 - MIRb SINE MIR -66 202 21 9 763 401 329 25 62 chr5 23381914 23382076 -129155183 - MIRb SINE MIR -110 158 3 9 763 261 0 0 0 chr5 23383049 23383078 -129154181 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 763 7369 129 8 9 chr5 23383465 23385376 -129151883 + Lx LINE L1 4746 6650 -4 9 763 3525 155 35 10 chr5 23385423 23386028 -129151231 + RMER16-int LTR ERVK 804 1423 -3983 9 763 13072 132 30 8 chr5 23386031 23387760 -129149499 + RMER16-int LTR ERVK 1539 3312 -2094 9 763 1520 36 0 45 chr5 23387760 23387962 -129149297 + B2_Mm2 SINE B2 1 193 -2 9 763 13072 152 31 31 chr5 23387962 23388528 -129148731 + RMER16-int LTR ERVK 3313 3973 -1433 9 763 330 338 46 36 chr5 23389216 23389523 -129147736 + RMER16-int LTR ERVK 4390 4699 -707 9 763 571 311 90 12 chr5 23389543 23389787 -129147472 + MuRRS4-int LTR ERV1 4622 4884 -179 9 763 314 287 11 0 chr5 23390391 23390478 -129146781 + MuRRS4-int LTR ERV1 5436 5523 -2033 9 763 771 315 45 39 chr5 23391020 23391571 -129145688 + RLTR6-int LTR ERV1 7345 7713 -65 9 763 820 275 44 15 chr5 23391698 23391971 -129145288 + RLTR41 LTR ERV1 166 446 0 9 763 1905 169 97 105 chr5 23392073 23392317 -129144942 + RLTR19 LTR ERVK 1 238 -261 9 763 5627 52 0 32 chr5 23392317 23393039 -129144220 + L1Md_F2 LINE L1 5884 6582 0 9 763 1905 169 97 105 chr5 23393039 23393297 -129143962 + RLTR19 LTR ERVK 239 499 0 9 763 21 0 0 0 chr5 23393530 23393551 -129143708 + AT_rich Low_complexity Low_complexity 1 21 0 9 763 302 331 83 43 chr5 23393653 23394129 -129143130 + L1MEe LINE L1 2375 2865 -3281 9 763 995 73 19 19 chr5 23394211 23394365 -129142894 + B2_Mm2 SINE B2 1 154 -41 9 763 382 284 0 31 chr5 23394387 23394485 -129142774 + PB1D10 SINE Alu 2 96 -21 9 763 435 83 0 0 chr5 23394512 23394572 -129142687 + (GA)n Simple_repeat Simple_repeat 1 60 0 9 763 185 35 69 0 chr5 23394754 23394783 -129142476 + (GGAAA)n Simple_repeat Simple_repeat 2 32 0 9 763 36 0 0 0 chr5 23394959 23394995 -129142264 + AT_rich Low_complexity Low_complexity 1 36 0 9 763 830 181 0 20 chr5 23395785 23395937 -129141322 - B1_Mur3 SINE Alu 0 149 1 9 763 207 337 125 6 chr5 23396749 23396925 -129140334 + L2a LINE L2 2706 2902 -517 9 763 385 288 19 89 chr5 23397112 23397246 -129140013 + PB1 SINE Alu 1 143 -6 9 763 194 91 0 29 chr5 23397264 23397298 -129139961 + (GGAAA)n Simple_repeat Simple_repeat 3 35 0 9 763 259 272 20 71 chr5 23397433 23397532 -129139727 - RSINE1 SINE B4 -16 149 56 9 763 223 240 0 0 chr5 23397570 23397620 -129139639 + CT-rich Low_complexity Low_complexity 2 51 0 9 763 969 126 0 0 chr5 23397623 23397798 -129139461 + (TC)n Simple_repeat Simple_repeat 2 176 0 9 763 784 196 22 0 chr5 23397798 23397936 -129139323 - B1_Mus2 SINE Alu -6 141 1 9 763 406 71 28 14 chr5 23398051 23398122 -129139137 + (CACTA)n Simple_repeat Simple_repeat 4 75 0 9 763 220 369 122 8 chr5 23398142 23398273 -129138986 + L2a LINE L2 3280 3425 -1 9 763 1414 45 71 22 chr5 23398816 23399000 -129138259 - B2_Mm1t SINE B2 0 193 1 9 763 380 246 127 74 chr5 23399418 23399607 -129137652 + B3 SINE B2 1 199 -17 9 763 468 0 0 0 chr5 23400625 23400677 -129136582 + (CCAA)n Simple_repeat Simple_repeat 2 53 0 9 763 244 222 19 0 chr5 23400677 23400731 -129136528 + CT-rich Low_complexity Low_complexity 2 56 0 9 763 249 59 0 0 chr5 23400958 23400992 -129136267 + RMER17C LTR ERVK 1 34 -376 9 763 1027 170 0 40 chr5 23400991 23401218 -129136041 + RMER17C LTR ERVK 189 406 -4 9 763 23 0 0 0 chr5 23401267 23401290 -129135969 + AT_rich Low_complexity Low_complexity 1 23 0 9 763 27 29 0 0 chr5 23402719 23402753 -129134506 + AT_rich Low_complexity Low_complexity 1 34 0 9 763 454 312 133 34 chr5 23403749 23403801 -129133458 - ORR1E LTR MaLR 0 359 299 9 763 351 65 0 0 chr5 23403801 23403847 -129133412 + (ATG)n Simple_repeat Simple_repeat 1 46 0 9 763 454 312 133 34 chr5 23403847 23404116 -129133143 - ORR1E LTR MaLR -61 298 7 9 763 4320 94 102 8 chr5 23404468 23405088 -129132171 + RLTR33 LTR ERVK 1 678 0 9 763 556 193 1 15 chr5 23405608 23405755 -129131504 + L1M5 LINE L1 5323 5468 -774 9 763 477 155 28 111 chr5 23405797 23405978 -129131281 + Lx9 LINE L1 7477 7642 -2 9 763 618 289 173 13 chr5 23405993 23406305 -129130954 + L1_Rod LINE L1 5427 5788 -59 9 763 1617 256 168 60 chr5 23406317 23406547 -129130712 + Lx8 LINE L1 6595 6830 -643 9 763 2395 109 109 104 chr5 23406547 23406989 -129130270 + RLTR41 LTR ERV1 1 444 -2 9 763 1617 256 168 60 chr5 23406989 23407414 -129129845 + Lx8 LINE L1 6831 7321 -152 9 763 245 183 17 0 chr5 23407641 23407701 -129129558 + (TA)n Simple_repeat Simple_repeat 1 61 0 9 763 488 224 43 8 chr5 23408326 23408443 -129128816 + MTE2b LTR MaLR 1 121 -258 9 763 2673 264 65 53 chr5 23408485 23409462 -129127797 - Lx8 LINE L1 -94 7379 6391 9 763 1027 235 70 8 chr5 23409464 23409721 -129127538 + MTE2b LTR MaLR 107 379 0 9 763 1629 243 96 13 chr5 23410391 23410858 -129126401 + Lx2B LINE L1 6495 7000 0 9 763 1359 71 0 0 chr5 23411018 23411245 -129126014 + (TG)n Simple_repeat Simple_repeat 1 227 0 9 763 384 138 0 0 chr5 23411496 23411561 -129125698 + (CACCAT)n Simple_repeat Simple_repeat 4 68 0 9 763 1232 27 0 20 chr5 23412154 23412304 -129124955 + B1_Mus2 SINE Alu 1 147 0 9 763 197 274 32 16 chr5 23413559 23413622 -129123637 - L2c LINE L2 0 3387 3324 9 763 486 296 242 3 chr5 23413951 23414249 -129123010 + MTEa LTR MaLR 1 369 -10 9 763 1531 131 116 102 chr5 23414666 23415250 -129122009 + RMER17B LTR ERVK 146 717 -92 9 763 1287 216 63 24 chr5 23415340 23415743 -129121516 + RLTR1 LTR ERV1 135 624 0 9 763 288 106 0 0 chr5 23415743 23415790 -129121469 + RMER17B LTR ERVK 816 862 -44 9 763 5589 119 68 5 chr5 23415795 23416689 -129120570 + RMER17A-int LTR ERVK 772 1722 -6 9 763 848 121 1 26 chr5 23416693 23416863 -129120396 + RMER17B LTR ERVK 1 168 -474 9 763 309 90 14 29 chr5 23416996 23417065 -129120194 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 9 763 594 244 32 0 chr5 23417068 23417191 -129120068 - B1_Mur2 SINE Alu -5 144 18 9 763 291 307 19 19 chr5 23417196 23417299 -129119960 - PB1D10 SINE Alu 0 117 15 9 763 26 0 0 0 chr5 23417722 23417748 -129119511 + AT_rich Low_complexity Low_complexity 1 26 0 9 763 274 244 132 11 chr5 23418110 23418201 -129119058 + MTEb LTR MaLR 205 306 -73 9 763 1085 294 66 35 chr5 23418240 23418726 -129118533 + MTE-int LTR MaLR 14 514 -1066 9 763 409 222 98 45 chr5 23418878 23419010 -129118249 - B1F1 SINE Alu -10 139 1 9 763 251 320 78 0 chr5 23419130 23419233 -129118026 + MTE-int LTR MaLR 769 879 -701 9 763 806 298 47 22 chr5 23419409 23419559 -129117700 + MTE-int LTR MaLR 1210 1367 -213 9 763 408 88 0 0 chr5 23419559 23419616 -129117643 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 763 806 298 47 22 chr5 23419616 23419743 -129117516 + MTE-int LTR MaLR 1368 1493 -87 9 763 2748 78 65 10 chr5 23419752 23419905 -129117354 + BGLII LTR ERVK 1 153 -268 9 763 279 0 0 0 chr5 23419905 23419936 -129117323 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 763 2748 78 65 10 chr5 23419936 23420181 -129117078 + BGLII LTR ERVK 154 420 -1 9 763 386 310 142 47 chr5 23420214 23420532 -129116727 + MTEa LTR MaLR 22 369 -10 9 763 666 166 52 26 chr5 23421703 23421858 -129115401 - RMER4A LTR ERVK 0 466 308 9 763 1534 145 100 136 chr5 23421857 23422293 -129114966 - RMER4A LTR ERVK -8 458 48 9 763 726 12 0 0 chr5 23422293 23422376 -129114883 + (TC)n Simple_repeat Simple_repeat 2 84 0 9 763 495 0 0 0 chr5 23422376 23422430 -129114829 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 763 1534 145 100 136 chr5 23422430 23422462 -129114797 - RMER4A LTR ERVK -419 47 7 9 763 388 149 22 22 chr5 23422647 23422736 -129114523 + G-rich Low_complexity Low_complexity 4 92 0 9 763 624 253 10 73 chr5 23423418 23423623 -129113636 - B3A SINE B2 -6 192 1 9 763 2834 127 120 22 chr5 23423990 23424523 -129112736 + RMER4B LTR ERVK 1 585 0 9 763 333 294 40 53 chr5 23425033 23425184 -129112075 + B1F SINE Alu 1 149 0 9 763 323 216 67 22 chr5 23425390 23425480 -129111779 - RMER10A LTR ERVL -31 411 318 9 763 594 151 0 0 chr5 23425531 23425637 -129111622 + GA-rich Low_complexity Low_complexity 4 109 0 9 763 252 319 114 42 chr5 23425638 23425900 -129111359 - RMER10A LTR ERVL -144 298 18 9 763 614 289 37 19 chr5 23426836 23426857 -129110402 - B3A SINE B2 -6 192 174 9 763 380 20 20 0 chr5 23426857 23426906 -129110353 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 763 717 240 1 0 chr5 23426906 23427046 -129110213 - B3 SINE B2 -25 173 28 9 763 260 238 140 19 chr5 23427086 23427193 -129110066 + B4 SINE B4 5 124 -168 9 763 370 248 152 0 chr5 23427298 23427423 -129109836 + B4A SINE B4 88 231 -61 9 763 312 214 91 64 chr5 23427424 23427452 -129109807 + PB1D10 SINE Alu 3 102 -15 9 763 274 244 163 59 chr5 23427452 23427517 -129109742 + B4A SINE B4 126 212 -80 9 763 276 77 0 0 chr5 23427517 23427556 -129109703 + (CAA)n Simple_repeat Simple_repeat 2 40 0 9 763 312 214 91 64 chr5 23427556 23427572 -129109687 + PB1D10 SINE Alu 103 115 -2 9 763 274 244 163 59 chr5 23427572 23427625 -129109634 + B4A SINE B4 213 274 -18 9 763 357 102 0 0 chr5 23427628 23427687 -129109572 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 763 2162 118 60 16 chr5 23428313 23428693 -129108566 - MTC LTR MaLR -21 400 4 9 763 2051 155 139 14 chr5 23429014 23429459 -129107800 + RMER13A LTR ERVK 1 501 -359 9 763 678 206 76 41 chr5 23429549 23429721 -129107538 + RMER13A LTR ERVK 683 860 0 9 763 3492 30 2 0 chr5 23432637 23433032 -129104227 + MTA_Mm LTR MaLR 1 396 0 9 763 509 271 45 146 chr5 23433757 23434272 -129102987 + MYSERV6-int LTR ERVK 5513 5975 -2984 9 763 299 328 25 23 chr5 23434149 23434372 -129102887 + MERVL-int LTR ERVL 3828 4134 -1627 9 763 390 205 0 0 chr5 23435326 23435409 -129101850 + (TA)n Simple_repeat Simple_repeat 1 83 0 9 763 6135 78 64 2 chr5 23436888 23438369 -129098890 + L1VL2 LINE L1 220 1808 -1807 9 763 7887 89 10 1 chr5 23438377 23439521 -129097738 - L1_Mus4 LINE L1 -5 6631 5478 9 763 300 286 0 0 chr5 23439705 23439782 -129097477 - PB1D10 SINE Alu -14 103 27 9 763 27 62 0 0 chr5 23440630 23440678 -129096581 + AT_rich Low_complexity Low_complexity 1 48 0 9 763 386 233 184 92 chr5 23441954 23442280 -129094979 + L1M3 LINE L1 4749 5109 -1037 9 763 251 296 68 3 chr5 23442561 23442681 -129094578 + L1M3 LINE L1 5657 5782 -402 9 763 242 257 103 19 chr5 23442758 23442865 -129094394 + L1M5 LINE L1 3507 3622 -2524 9 763 818 129 129 0 chr5 23443235 23443367 -129093892 + B1_Mur3 SINE Alu 1 149 0 9 763 188 150 33 0 chr5 23443370 23443430 -129093829 + A-rich Low_complexity Low_complexity 3 64 0 1 763 289 142 21 69 chr5 23443559 23443748 -129093511 + T-rich Low_complexity Low_complexity 1 180 0 1 763 344 247 102 51 chr5 23443797 23443895 -129093364 - PB1D10 SINE Alu 0 117 15 1 763 1617 188 82 53 chr5 23443895 23444084 -129093175 - ORR1B2 LTR MaLR 0 367 175 1 763 4528 19 0 0 chr5 23444084 23444566 -129092693 + LTRIS_Mm LTR ERV1 1 482 0 1 763 1617 188 82 53 chr5 23444566 23444595 -129092664 - ORR1B2 LTR MaLR -193 174 156 1 763 252 0 0 0 chr5 23444595 23444623 -129092636 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 763 1617 188 82 53 chr5 23444623 23444758 -129092501 - ORR1B2 LTR MaLR -212 155 3 1 763 6235 154 63 8 chr5 23444760 23445920 -129091339 - ORR1B2-int LTR MaLR 0 1509 286 1 763 304 306 53 44 chr5 23445971 23446084 -129091175 - PB1D10 SINE Alu -1 116 3 1 763 1408 239 118 63 chr5 23446084 23446532 -129090727 + RLTR20B3 LTR ERVK 15 471 -106 1 763 369 0 0 0 chr5 23446532 23446573 -129090686 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 763 1408 250 105 55 chr5 23446573 23446648 -129090611 + RLTR20B3 LTR ERVK 449 548 -29 1 763 650 336 137 6 chr5 23447124 23447483 -129089776 + MER77 LTR ERVL 199 604 -3 1 763 392 213 0 107 chr5 23447594 23447678 -129089581 + B1_Mur1 SINE Alu 62 136 -13 1 763 429 20 0 0 chr5 23447681 23447731 -129089528 + (CAA)n Simple_repeat Simple_repeat 2 51 0 1 763 222 37 0 0 chr5 23447775 23447802 -129089457 + (TTC)n Simple_repeat Simple_repeat 2 28 0 1 763 3090 160 27 138 chr5 23448086 23448860 -129088399 + RMER6C LTR ERVK 3 690 0 1 763 448 305 7 30 chr5 23448860 23448995 -129088264 - B1F SINE Alu -17 132 1 1 763 318 315 14 0 chr5 23449851 23449924 -129087335 + L1M4b LINE L1 12 85 -7249 1 763 930 173 145 10 chr5 23449940 23450133 -129087126 + URR1A DNA MER1_type 5 223 -3 1 763 1176 231 156 89 chr5 23450121 23450807 -129086452 + RMER12 LTR ERVK 1 686 -1122 1 763 738 208 208 85 chr5 23450918 23451245 -129086014 - RMER12 LTR ERVK 0 1322 958 1 763 450 0 0 0 chr5 23451245 23451295 -129085964 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 763 350 205 108 165 chr5 23451295 23451340 -129085919 - RMER12 LTR ERVK -205 1199 1156 1 763 855 0 0 0 chr5 23451345 23451440 -129085819 + L1_Mm LINE L1 5373 5467 -416 1 763 8144 35 64 0 chr5 23451460 23452396 -129084863 + L1Md_T LINE L1 5587 6582 0 1 763 501 207 126 56 chr5 23452417 23452549 -129084710 + B3A SINE B2 1 147 -51 1 763 594 0 0 0 chr5 23452549 23452615 -129084644 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 763 1790 140 107 16 chr5 23452616 23452935 -129084324 + ORR1B2 LTR MaLR 20 367 0 1 763 21 36 0 0 chr5 23452939 23452967 -129084292 + AT_rich Low_complexity Low_complexity 1 28 0 1 763 195 42 0 0 chr5 23453074 23453098 -129084161 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 763 1307 234 60 103 chr5 23453285 23453771 -129083488 + RLTR11A LTR ERVK 53 517 -11 1 763 6932 157 36 43 chr5 23454727 23456063 -129081196 + MYSERV16_I-int LTR ERVK 1 1358 -1484 1 763 4355 45 6 2 chr5 23456063 23456636 -129080623 + L1Md_F2 LINE L1 5351 5925 -657 1 763 2762 165 23 0 chr5 23456636 23457120 -129080139 - MYSERV16_I-int LTR ERVK -531 1795 1301 1 763 4016 91 11 23 chr5 23457121 23457686 -129079573 - L1Md_T LINE L1 -1 6581 6024 1 763 650 285 154 4 chr5 23457814 23458151 -129079108 - Lx7 LINE L1 -1792 5904 5520 1 763 481 215 142 30 chr5 23458151 23458285 -129078974 - B1F SINE Alu 0 149 1 1 763 435 25 0 0 chr5 23458304 23458384 -129078875 + (TTCTC)n Simple_repeat Simple_repeat 1 80 0 1 763 1620 0 0 0 chr5 23458384 23458564 -129078695 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 1 763 1271 68 0 17 chr5 23458569 23458749 -129078510 + (TTTCC)n Simple_repeat Simple_repeat 3 179 0 1 763 608 38 13 0 chr5 23458749 23458828 -129078431 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 763 1119 50 0 0 chr5 23458829 23458968 -129078291 - B1_Mus2 SINE Alu 0 147 9 1 763 934 238 11 16 chr5 23459011 23459195 -129078064 - B3A SINE B2 -15 183 1 1 763 738 219 20 14 chr5 23459320 23459468 -129077791 - B1F SINE Alu 0 149 1 1 763 258 328 43 26 chr5 23459592 23459708 -129077551 - L1MEg1 LINE L1 -5590 645 528 1 763 255 159 45 0 chr5 23459741 23459785 -129077474 - ID SINE ID -139 85 40 1 763 233 266 62 15 chr5 23459749 23459814 -129077445 - tRNA-Ala-GCA tRNA tRNA -7 68 1 1 763 414 272 113 60 chr5 23460305 23460473 -129076786 - MER68 LTR ERVL -45 518 342 1 763 280 233 39 64 chr5 23460919 23460997 -129076262 - PB1D10 SINE Alu -11 106 31 1 763 248 62 0 0 chr5 23461121 23461153 -129076106 - URR1B DNA MER1_type 0 225 194 1 763 1147 126 57 6 chr5 23461182 23461358 -129075901 - B2_Mm2 SINE B2 -9 186 2 1 763 782 110 22 7 chr5 23461358 23461495 -129075764 - URR1B DNA MER1_type -21 204 66 1 763 452 311 101 7 chr5 23461694 23461843 -129075416 + RSINE1 SINE B4 3 165 0 1 764 1063 234 83 3 chr5 23461896 23462164 -129075095 + MTEb LTR MaLR 1 280 -99 1 764 354 212 20 114 chr5 23462486 23462635 -129074624 + MTEb LTR MaLR 213 347 -32 1 764 250 206 95 0 chr5 23463016 23463079 -129074180 - ERVL-E-int LTR ERVL -1738 3929 3861 1 764 589 269 114 0 chr5 23465034 23465201 -129072058 - B3 SINE B2 -30 186 1 1 764 189 0 0 0 chr5 23467630 23467651 -129069608 + (T)n Simple_repeat Simple_repeat 1 21 0 1 764 273 261 171 0 chr5 23468714 23468802 -129068457 - MER5A1 DNA MER1_type -61 105 3 1 764 261 83 0 0 chr5 23471608 23471644 -129065615 + (TA)n Simple_repeat Simple_repeat 1 36 0 1 764 231 169 76 15 chr5 23472284 23472350 -129064909 + A-rich Low_complexity Low_complexity 2 71 0 1 764 198 0 0 0 chr5 23473921 23473943 -129063316 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 1 764 23 0 0 0 chr5 23473975 23473998 -129063261 + AT_rich Low_complexity Low_complexity 1 23 0 1 764 226 301 61 61 chr5 23474036 23474167 -129063092 - MIRc SINE MIR -25 243 113 1 764 498 233 78 0 chr5 23475162 23475196 -129062063 - B3 SINE B2 -3 213 172 1 764 477 0 0 0 chr5 23475196 23475249 -129062010 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 764 498 250 56 28 chr5 23475249 23475361 -129061898 - B3 SINE B2 -45 171 2 1 764 1241 48 7 0 chr5 23475539 23475684 -129061575 + B1_Mm SINE Alu 2 147 0 1 764 471 237 78 9 chr5 23476165 23476280 -129060979 + RSINE1 SINE B4 23 145 -20 1 764 393 259 37 29 chr5 23476382 23476492 -129060767 - PB1D10 SINE Alu -20 129 21 1 764 22 0 0 0 chr5 23476745 23476767 -129060492 + AT_rich Low_complexity Low_complexity 1 22 0 1 764 1409 95 0 6 chr5 23477027 23477207 -129060052 - B2_Mm2 SINE B2 -14 181 3 1 764 3499 51 2 0 chr5 23477290 23477685 -129059574 - MTA_Mm LTR MaLR 0 396 1 1 764 285 336 79 16 chr5 23478034 23478227 -129059032 - L2a LINE L2 -19 3407 3145 1 764 238 208 78 65 chr5 23478370 23478447 -129058812 - B4 SINE B4 -214 78 1 1 764 268 282 54 40 chr5 23478919 23478993 -129058266 + PB1D10 SINE Alu 34 108 -9 1 764 238 0 0 0 chr5 23480096 23480123 -129057136 - Lx3_Mus LINE L1 -881 6128 6102 1 764 3265 88 91 11 chr5 23480123 23480573 -129056686 + Lx3_Mus LINE L1 6524 7009 0 1 764 447 243 93 51 chr5 23481745 23482022 -129055237 + MTE2b LTR MaLR 21 360 -19 1 764 495 0 0 0 chr5 23482053 23482108 -129055151 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1 764 1396 184 68 48 chr5 23482174 23482318 -129054941 + ORR1D1 LTR MaLR 29 170 -204 1 764 1193 101 6 0 chr5 23482318 23482497 -129054762 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 764 1396 184 68 48 chr5 23482497 23482688 -129054571 + ORR1D1 LTR MaLR 171 371 -3 1 764 333 0 0 0 chr5 23483941 23483978 -129053281 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 764 928 85 39 0 chr5 23485834 23485964 -129051295 - B1_Mus1 SINE Alu -1 147 13 1 764 730 228 72 48 chr5 23485954 23485980 -129051279 - B3 SINE B2 -46 170 150 1 764 492 18 0 0 chr5 23485980 23486037 -129051222 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 764 933 144 0 0 chr5 23486037 23486176 -129051083 - B2_Mm2 SINE B2 -56 139 1 1 764 332 365 94 25 chr5 23487267 23487469 -129049790 + L1MCc LINE L1 382 597 -5826 1 764 1052 100 0 6 chr5 23487480 23487641 -129049618 + (TTTCC)n Simple_repeat Simple_repeat 1 160 0 1 764 498 33 0 0 chr5 23487680 23487740 -129049519 + (TTTCC)n Simple_repeat Simple_repeat 3 62 0 1 764 3495 170 59 29 chr5 23487745 23488407 -129048852 - RMER1B Other Other -18 1048 367 1 764 376 250 181 14 chr5 23488407 23488545 -129048714 + L1MCc LINE L1 953 1113 -5310 1 764 952 177 0 7 chr5 23489500 23489642 -129047617 + B1_Mur3 SINE Alu 3 143 -6 1 764 529 186 193 8 chr5 23489968 23490087 -129047172 + B1_Mur4 SINE Alu 1 141 -9 1 764 286 235 0 0 chr5 23490093 23490144 -129047115 + ID SINE ID 21 71 -153 1 764 458 293 20 48 chr5 23490513 23490660 -129046599 + RSINE1 SINE B4 2 144 -21 1 764 387 0 0 0 chr5 23490662 23490705 -129046554 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 764 461 258 8 48 chr5 23490768 23490894 -129046365 - B3A SINE B2 -1 197 77 1 764 264 143 89 0 chr5 23492722 23492778 -129044481 - Lx9 LINE L1 -1 7643 7583 1 764 615 14 0 0 chr5 23493209 23493281 -129043978 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 764 669 199 56 42 chr5 23493352 23493494 -129043765 + B1_Mur1 SINE Alu 6 149 0 1 764 278 228 31 61 chr5 23494751 23494849 -129042410 + BC1_Mm scRNA scRNA 8 102 -50 1 764 592 125 62 210 chr5 23494865 23495027 -129042232 + B1_Mur4 SINE Alu 13 150 0 1 764 214 320 119 8 chr5 23495473 23495599 -129041660 - MIRc SINE MIR -17 251 112 1 764 599 224 8 16 chr5 23496128 23496255 -129041004 + B1_Mur2 SINE Alu 17 142 -7 1 764 348 111 0 36 chr5 23496275 23496359 -129040900 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 1 764 245 271 196 10 chr5 23496612 23496709 -129040550 - MLT1A1 LTR MaLR 0 408 294 1 764 368 239 0 0 chr5 23496812 23496883 -129040376 - ID4 SINE ID -11 72 2 1 764 1417 94 5 20 chr5 23496888 23497083 -129040176 - B2_Mm2 SINE B2 -1 194 3 1 764 182 286 54 54 chr5 23497223 23497297 -129039962 + L2a LINE L2 3348 3421 -5 1 764 21 36 0 0 chr5 23497487 23497515 -129039744 + AT_rich Low_complexity Low_complexity 1 28 0 1 764 22 0 0 0 chr5 23497661 23497683 -129039576 + AT_rich Low_complexity Low_complexity 1 22 0 1 764 23 0 0 0 chr5 23497844 23497867 -129039392 + AT_rich Low_complexity Low_complexity 1 23 0 1 764 855 329 21 7 chr5 23497993 23498281 -129038978 + B4A SINE B4 1 292 0 1 764 209 130 0 61 chr5 23499888 23499937 -129037322 + T-rich Low_complexity Low_complexity 3 48 0 1 764 366 180 16 0 chr5 23499939 23500000 -129037259 + Lx8 LINE L1 6347 6408 -1065 1 764 310 298 56 0 chr5 23500001 23500107 -129037152 + Lx8 LINE L1 6406 6520 -1176 1 764 1212 275 36 45 chr5 23500136 23500608 -129036651 + Lx8 LINE L1 7002 7469 -4 1 764 998 240 9 24 chr5 23500860 23501073 -129036186 + B3 SINE B2 1 210 -6 2 764 308 270 107 29 chr5 23501684 23501787 -129035472 - RSINE1 SINE B4 -29 136 26 3 764 243 0 0 0 chr5 23502114 23502141 -129035118 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 4 764 274 303 36 36 chr5 23502208 23502345 -129034914 + B3A SINE B2 1 137 -61 5 764 1192 41 14 0 chr5 23502483 23502628 -129034631 + B1_Mus2 SINE Alu 1 147 0 6 764 356 298 109 40 chr5 23503074 23503376 -129033883 - L1MD3 LINE L1 -1212 6783 6461 7 764 1175 141 202 7 chr5 23503588 23503865 -129033394 - MTC LTR MaLR -8 413 83 8 764 887 155 7 7 chr5 23503882 23504031 -129033228 - B1_Mur3 SINE Alu 0 149 1 9 764 449 246 8 24 chr5 23504031 23504127 -129033132 - MTC LTR MaLR -327 94 1 8 764 1253 255 181 26 chr5 23504574 23505150 -129032109 + LTR65 LTR ERV1 1 665 -4 1 764 660 176 0 0 chr5 23506737 23506868 -129030391 + (GCTG)n Simple_repeat Simple_repeat 4 134 0 1 764 238 313 84 0 chr5 23506871 23506954 -129030305 - PB1D10 SINE Alu -7 110 21 1 764 486 282 109 134 chr5 23507234 23507532 -129029727 + L1M5 LINE L1 4655 4953 -1193 1 764 558 0 0 0 chr5 23507532 23507594 -129029665 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 1 764 486 282 109 134 chr5 23507594 23507809 -129029450 + L1M5 LINE L1 4954 5157 -989 1 764 916 121 21 0 chr5 23507809 23507949 -129029310 + B1_Mus1 SINE Alu 5 147 -1 1 764 486 282 109 134 chr5 23507949 23508158 -129029101 + L1M5 LINE L1 5158 5359 -787 1 764 195 162 0 0 chr5 23508191 23508228 -129029031 + CT-rich Low_complexity Low_complexity 2 38 0 1 764 222 37 0 0 chr5 23508228 23508255 -129029004 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 764 603 230 61 20 chr5 23508297 23508572 -129028687 + ORR1D1 LTR MaLR 8 326 -48 1 764 624 227 1 34 chr5 23508584 23508729 -129028530 - B1F SINE Alu -3 146 3 1 764 227 62 62 0 chr5 23508766 23508798 -129028461 + L1M2 LINE L1 5855 5888 -412 2 764 464 269 15 8 chr5 23508880 23509011 -129028248 + L1MA8 LINE L1 6107 6238 -53 2 764 516 225 90 0 chr5 23509021 23509132 -129028127 + B1F SINE Alu 22 142 -7 2 764 207 0 0 0 chr5 23509136 23509159 -129028100 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 764 312 197 155 0 chr5 23509196 23509267 -129027992 - PB1D9 SINE Alu -5 115 34 2 764 7364 216 96 35 chr5 23509370 23509499 -129027760 - Lx9 LINE L1 0 7644 7485 2 764 639 39 0 0 chr5 23509499 23509577 -129027682 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 2 764 7364 216 96 35 chr5 23509577 23510153 -129027106 - Lx9 LINE L1 -160 7484 6906 2 764 5844 47 1 12 chr5 23510153 23510872 -129026387 + L1_Mus2 LINE L1 5856 6566 0 2 764 7364 216 95 34 chr5 23510872 23512141 -129025118 - Lx9 LINE L1 -739 6905 5547 2 764 1937 173 120 9 chr5 23512142 23512610 -129024649 + RMER3D-int LTR ERVK 1014 1533 -1309 2 764 3378 193 46 40 chr5 23512642 23513711 -129023548 + RMER3D-int LTR ERVK 1532 2835 -7 2 764 3183 68 27 0 chr5 23513718 23514128 -129023131 + BGLII LTR ERVK 1 421 0 2 764 5219 205 65 42 chr5 23514128 23514460 -129022799 - Lx9 LINE L1 -328 5552 5218 2 764 992 155 162 15 chr5 23514460 23514657 -129022602 - URR1A DNA MER1_type 0 226 1 3 764 5219 205 65 42 chr5 23514657 23515016 -129022243 - Lx9 LINE L1 -663 5217 4851 2 764 195 42 0 0 chr5 23515016 23515040 -129022219 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 764 5219 205 65 42 chr5 23515040 23515659 -129021600 - Lx9 LINE L1 -1030 4850 4210 2 764 330 133 104 9 chr5 23516250 23516331 -129020928 - Lx9 LINE L1 -1893 4253 4136 2 764 759 142 44 7 chr5 23516361 23516496 -129020763 + B1_Mus1 SINE Alu 9 148 0 3 764 6354 45 38 8 chr5 23516679 23517463 -129019796 + RLTR13C2 LTR ERVK 1 808 0 3 764 1840 172 157 36 chr5 23518075 23518546 -129018713 - RLTR24 LTR ERV1 0 529 2 3 764 628 218 45 0 chr5 23518754 23518887 -129018372 - RSINE1 SINE B4 -25 140 2 3 764 295 247 141 0 chr5 23519855 23519940 -129017319 - PB1D10 SINE Alu -20 97 1 3 764 785 178 53 12 chr5 23520100 23520271 -129016988 + B3A SINE B2 3 180 -18 3 764 222 171 0 0 chr5 23520275 23520316 -129016943 + GA-rich Low_complexity Low_complexity 1 41 0 3 764 1331 62 0 6 chr5 23520316 23520495 -129016764 + (GAA)n Simple_repeat Simple_repeat 3 180 0 3 764 241 336 9 26 chr5 23521181 23521294 -129015965 - L3 LINE CR1 -564 3925 3815 4 764 181 217 65 0 chr5 23521376 23521422 -129015837 + L2a LINE L2 3378 3426 0 4 764 369 197 0 0 chr5 23521429 23521505 -129015754 + CT-rich Low_complexity Low_complexity 2 77 0 4 764 609 280 25 0 chr5 23521533 23521690 -129015569 - ID_B1 SINE B4 -63 161 1 4 764 626 236 8 8 chr5 23521811 23521939 -129015320 - RSINE1 SINE B4 -33 132 5 4 764 1633 26 11 0 chr5 23522108 23522298 -129014961 + B2_Mm1a SINE B2 2 193 0 4 764 1008 92 35 0 chr5 23522321 23522463 -129014796 + B1_Mus2 SINE Alu 1 147 0 4 764 1536 169 177 6 chr5 23522768 23523084 -129014175 - ORR1D1 LTR MaLR -4 370 1 4 764 615 263 84 0 chr5 23523567 23523746 -129013513 - B3A SINE B2 -3 195 2 4 764 502 187 26 70 chr5 23523927 23524042 -129013217 - PB1D7 SINE Alu -5 115 6 4 764 24 32 0 0 chr5 23524048 23524079 -129013180 + AT_rich Low_complexity Low_complexity 1 31 0 5 764 481 175 91 32 chr5 23524090 23524200 -129013059 - B1_Mur1 SINE Alu -10 139 37 5 764 386 175 25 12 chr5 23524260 23524341 -129012918 + ID SINE ID 2 83 -141 5 764 311 226 47 9 chr5 23524341 23524367 -129012892 + BC1_Mm scRNA scRNA 2 112 -40 5 764 233 229 33 0 chr5 23526235 23526296 -129010963 + GA-rich Low_complexity Low_complexity 6 68 0 5 764 307 271 173 37 chr5 23526995 23527206 -129010053 - MLT1C LTR MaLR -9 458 161 5 764 208 289 144 0 chr5 23527222 23527326 -129009933 - L2c LINE L2 0 3387 3269 5 764 21 0 0 0 chr5 23528068 23528089 -129009170 + AT_rich Low_complexity Low_complexity 1 21 0 5 764 22 0 0 0 chr5 23528270 23528292 -129008967 + AT_rich Low_complexity Low_complexity 1 22 0 5 764 3332 112 9 32 chr5 23529055 23529581 -129007678 - Lx LINE L1 0 6654 6141 5 764 7492 64 14 5 chr5 23529613 23530566 -129006693 - L1Md_F3 LINE L1 -14 6570 5610 6 764 1515 88 98 10 chr5 23530564 23530811 -129006448 + L1Md_F3 LINE L1 5350 5614 -269 6 764 400 237 48 56 chr5 23531231 23531356 -129005903 - PB1 SINE Alu -2 125 2 6 764 743 269 90 39 chr5 23532093 23532348 -129004911 + B4A SINE B4 2 269 -23 6 764 228 273 104 0 chr5 23532432 23532509 -129004750 + MIRb SINE MIR 93 177 -91 6 764 739 313 21 45 chr5 23533003 23533334 -129003925 - Lx9 LINE L1 -267 7377 7055 6 764 874 219 39 19 chr5 23533865 23534070 -129003189 - B3 SINE B2 -7 209 1 6 764 24 32 0 0 chr5 23534260 23534291 -129002968 + AT_rich Low_complexity Low_complexity 1 31 0 6 764 228 171 0 0 chr5 23534778 23534819 -129002440 + RSINE1 SINE B4 14 54 -111 6 764 235 104 20 20 chr5 23535676 23535725 -129001534 + (GAAA)n Simple_repeat Simple_repeat 3 51 0 6 764 608 103 9 0 chr5 23536881 23536997 -129000262 + (TG)n Simple_repeat Simple_repeat 1 117 0 6 764 455 217 24 32 chr5 23537122 23537246 -129000013 + B3A SINE B2 71 193 -5 7 764 657 205 133 26 chr5 23537265 23537460 -128999799 + B3 SINE B2 1 216 0 7 764 252 0 0 0 chr5 23537555 23537583 -128999676 + (TA)n Simple_repeat Simple_repeat 1 28 0 7 764 1115 114 6 0 chr5 23537648 23537823 -128999436 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 7 764 271 192 27 0 chr5 23537941 23538014 -128999245 + (TA)n Simple_repeat Simple_repeat 1 75 0 7 764 233 316 38 0 chr5 23538280 23538359 -128998900 + ID4_ SINE ID 2 83 0 7 764 281 286 12 0 chr5 23538537 23538621 -128998638 + MER3 DNA MER1_type 23 107 -102 7 764 583 239 36 100 chr5 23538665 23538995 -128998264 + RLTR15 LTR ERVK 33 341 -18 7 764 1440 119 4 0 chr5 23539021 23539247 -128998012 + RLTR15 LTR ERVK 133 359 0 7 764 1125 78 0 0 chr5 23539264 23539417 -128997842 + (TG)n Simple_repeat Simple_repeat 1 153 0 7 764 364 277 0 38 chr5 23539452 23539557 -128997702 - RSINE1 SINE B4 -62 103 3 8 764 784 209 0 7 chr5 23539755 23539890 -128997369 + B1_Mus2 SINE Alu 2 135 -12 8 764 284 259 128 15 chr5 23541440 23541573 -128995686 + B1F1 SINE Alu 1 148 -1 8 764 898 300 116 70 chr5 23542700 23543216 -128994043 + MER21B LTR ERV1 273 812 -51 8 764 301 254 16 0 chr5 23543397 23543460 -128993799 + ID4 SINE ID 4 67 -16 8 764 21 0 0 0 chr5 23543940 23543961 -128993298 + AT_rich Low_complexity Low_complexity 1 21 0 8 764 734 162 98 18 chr5 23543984 23544147 -128993112 - B3A SINE B2 -18 180 5 8 764 369 105 0 95 chr5 23544326 23544410 -128992849 + PB1D9 SINE Alu 31 106 -14 8 764 360 0 0 0 chr5 23544410 23544450 -128992809 + (GAGAA)n Simple_repeat Simple_repeat 5 44 0 8 764 1611 0 0 0 chr5 23544450 23544629 -128992630 + (GGAGA)n Simple_repeat Simple_repeat 1 179 0 8 764 1056 226 10 0 chr5 23545989 23546193 -128991066 + B3 SINE B2 1 206 -10 9 764 1379 299 39 31 chr5 23546234 23546780 -128990479 - MER44B DNA MER2_type 0 550 1 9 764 876 276 87 30 chr5 23546956 23547517 -128989742 - L1ME3B LINE L1 -285 5955 5354 9 764 2532 133 65 30 chr5 23548325 23548799 -128988460 - RLTR19 LTR ERVK -8 491 1 9 764 319 260 70 0 chr5 23550186 23550286 -128986973 + MLT1A1 LTR MaLR 3 109 -299 9 764 441 223 18 9 chr5 23550364 23550477 -128986782 + MLT1A1 LTR MaLR 282 395 -13 9 764 1132 247 98 69 chr5 23550629 23551190 -128986069 + L1MA6 LINE L1 5649 6259 -41 9 764 474 225 0 0 chr5 23551335 23551513 -128985746 + (CA)n Simple_repeat Simple_repeat 1 178 0 9 764 490 271 0 32 chr5 23551605 23551930 -128985329 + CT-rich Low_complexity Low_complexity 1 314 0 9 764 425 308 7 15 chr5 23552929 23553064 -128984195 + ID_B1 SINE B4 90 223 -1 9 764 389 239 9 9 chr5 23553119 23553231 -128984028 - RSINE1 SINE B4 -44 121 9 9 764 276 284 30 0 chr5 23554722 23554789 -128982470 - ID SINE ID -142 82 14 1 764 9512 114 20 1 chr5 23555025 23556465 -128980794 - Lx2B LINE L1 -19 6981 5519 1 764 252 0 0 0 chr5 23556513 23556541 -128980718 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 764 704 153 0 0 chr5 23556546 23556657 -128980602 + B1_Mus2 SINE Alu 31 141 -6 1 764 912 19 0 0 chr5 23556659 23556765 -128980494 + (GA)n Simple_repeat Simple_repeat 1 106 0 1 764 3271 86 73 22 chr5 23557412 23557946 -128979313 + RMER2 LTR ERV1 1 561 -6 1 764 207 0 0 0 chr5 23558647 23558670 -128978589 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 764 1228 103 21 16 chr5 23560337 23560525 -128976734 + B2_Mm1t SINE B2 2 190 -3 1 764 1081 267 28 31 chr5 23560773 23561063 -128976196 + B4 SINE B4 2 290 -2 1 764 210 220 17 17 chr5 23561067 23561127 -128976132 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 1 764 572 283 47 26 chr5 23561628 23561820 -128975439 + MTD LTR MaLR 1 196 -223 1 764 821 290 5 0 chr5 23561817 23562010 -128975249 - B3 SINE B2 -14 202 9 1 764 2724 153 43 22 chr5 23562473 23562962 -128974297 - RLTR19 LTR ERVK 0 499 1 1 764 889 168 73 54 chr5 23563038 23563423 -128973836 + RLTR24 LTR ERV1 5 455 -74 1 764 766 168 239 17 chr5 23563535 23563711 -128973548 - B3 SINE B2 0 216 2 1 764 223 302 40 30 chr5 23564423 23564522 -128972737 + L2 LINE L2 2787 2886 -533 1 764 1739 16 0 0 chr5 23564605 23564797 -128972462 + B2_Mm1a SINE B2 2 193 0 1 764 693 213 8 0 chr5 23564974 23565101 -128972158 + B1_Mur1 SINE Alu 5 132 -17 1 764 930 131 14 7 chr5 23565115 23565261 -128971998 - B1_Mur4 SINE Alu 0 150 4 1 764 1472 285 99 28 chr5 23565856 23566635 -128970624 + L1MC2 LINE L1 5476 6309 -35 1 764 1314 72 46 0 chr5 23566785 23566979 -128970280 + L1_Mus3 LINE L1 6382 6584 -54 1 764 940 161 247 26 chr5 23567454 23567762 -128969497 - ORR1C2 LTR MaLR -8 376 1 1 764 467 252 26 9 chr5 23568432 23568548 -128968711 + PB1 SINE Alu 10 127 0 1 764 3015 270 57 41 chr5 23568712 23569743 -128967516 + Lx8 LINE L1 6239 7286 -187 1 764 784 156 21 7 chr5 23569743 23569885 -128967374 - ORR1B2 LTR MaLR 0 367 224 1 764 245 229 134 27 chr5 23570583 23570695 -128966564 + MIR SINE MIR 66 189 -73 1 764 737 277 64 57 chr5 23570826 23571237 -128966022 + RLTR11B LTR ERVK 1 424 -17 1 764 4883 42 0 0 chr5 23571376 23571950 -128965309 + L1Md_T LINE L1 6009 6582 0 1 764 505 231 40 53 chr5 23572367 23572518 -128964741 - RSINE1 SINE B4 0 165 17 1 764 231 36 0 0 chr5 23572576 23572604 -128964655 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 764 707 291 124 81 chr5 23572706 23573236 -128964023 + MLT1F2 LTR MaLR 8 560 0 1 764 1020 207 5 10 chr5 23574345 23574545 -128962714 - B3 SINE B2 -5 211 13 1 764 1589 193 85 0 chr5 23575626 23576216 -128961043 + RLTR33 LTR ERVK 1 673 -5 1 764 596 281 25 58 chr5 23576221 23576412 -128960847 + ORR1E LTR MaLR 3 205 -179 1 764 238 258 45 15 chr5 23576478 23576545 -128960714 + ORR1E LTR MaLR 279 347 -32 1 764 1762 315 204 38 chr5 23576550 23576932 -128960327 + ORR1E-int LTR MaLR 12 511 -1069 1 764 7299 63 5 0 chr5 23576932 23577821 -128959438 - RLTR13B1 LTR ERVK 0 893 1 1 764 1762 315 204 38 chr5 23577821 23578682 -128958577 + ORR1E-int LTR MaLR 512 1462 -118 1 764 563 232 108 48 chr5 23578683 23578869 -128958390 + B3A SINE B2 2 198 0 1 764 584 284 27 7 chr5 23579634 23579783 -128957476 - RSINE1 SINE B4 -10 155 4 1 764 369 282 39 0 chr5 23579964 23580067 -128957192 - MER5A1 DNA MER1_type -18 148 42 1 764 982 286 66 25 chr5 23580319 23580421 -128956838 + Lx7 LINE L1 5487 5591 -289 1 764 303 28 0 0 chr5 23580421 23580457 -128956802 + (TA)n Simple_repeat Simple_repeat 1 36 0 1 764 982 258 66 26 chr5 23580457 23580760 -128956499 + Lx7 LINE L1 5592 5909 -1787 1 764 210 143 0 0 chr5 23580789 23580824 -128956435 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 764 243 0 0 0 chr5 23580877 23580904 -128956355 + (A)n Simple_repeat Simple_repeat 1 27 0 1 764 2824 32 67 6 chr5 23581093 23581437 -128955822 - RLTR10B2 LTR ERVK 0 365 1 1 764 453 19 0 0 chr5 23581437 23581491 -128955768 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 764 330 297 186 0 chr5 23581831 23581949 -128955310 + RSINE1 SINE B4 4 143 -22 1 764 315 0 0 0 chr5 23581977 23582012 -128955247 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 764 326 267 89 24 chr5 23582093 23582262 -128954997 + LTR37A LTR ERV1 81 260 -166 1 764 872 153 14 0 chr5 23582558 23582702 -128954557 + B1_Mur3 SINE Alu 1 146 -3 1 764 409 288 110 83 chr5 23582851 23583105 -128954154 + B4 SINE B4 18 278 -14 1 764 195 129 0 0 chr5 23583171 23583202 -128954057 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1 764 925 107 0 13 chr5 23583553 23583704 -128953555 + (GGGA)n Simple_repeat Simple_repeat 1 149 0 1 764 451 104 0 122 chr5 23583716 23583818 -128953441 - RMER10A LTR ERVL -282 116 28 1 764 216 0 0 0 chr5 23584208 23584232 -128953027 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 764 210 154 0 0 chr5 23584298 23584337 -128952922 + A-rich Low_complexity Low_complexity 2 40 0 1 764 412 355 79 23 chr5 23585608 23585911 -128951348 + RMER5 LTR ERV1 145 464 -70 1 764 512 161 44 95 chr5 23585933 23586070 -128951189 - B1_Mus1 SINE Alu -1 147 18 1 764 252 217 50 0 chr5 23586092 23586152 -128951107 + RMER5 LTR ERV1 472 534 0 1 764 719 261 163 4 chr5 23587255 23587494 -128949765 + MTEb LTR MaLR 1 277 -102 1 764 441 0 0 0 chr5 23588458 23588507 -128948752 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 764 441 0 0 0 chr5 23588507 23588555 -128948704 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 764 394 324 0 0 chr5 23588556 23588658 -128948601 - PB1D10 SINE Alu -15 102 1 1 764 241 264 126 0 chr5 23588888 23588975 -128948284 - B1_Mus1 SINE Alu -14 106 9 1 764 357 266 43 0 chr5 23588935 23589029 -128948230 - ID_B1 SINE B4 -95 129 32 1 764 283 277 88 0 chr5 23589029 23589138 -128948121 + MIRc SINE MIR 64 182 -86 1 764 252 86 0 0 chr5 23590163 23590198 -128947061 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 764 947 71 0 0 chr5 23590353 23590480 -128946779 - B1_Mus1 SINE Alu -20 128 2 1 764 437 195 0 139 chr5 23590368 23590505 -128946754 - MT2B LTR ERVL -337 264 147 1 764 436 240 10 20 chr5 23590473 23590571 -128946688 - ID_B1 SINE B4 -30 194 98 1 764 300 172 0 0 chr5 23591585 23591643 -128945616 + GA-rich Low_complexity Low_complexity 3 60 0 1 764 635 193 0 0 chr5 23591646 23591765 -128945494 - MTD LTR MaLR -300 119 1 1 764 1206 54 0 0 chr5 23592301 23592448 -128944811 - B1_Mm SINE Alu 0 147 1 1 764 386 82 35 12 chr5 23592505 23592591 -128944668 + (CAAAA)n Simple_repeat Simple_repeat 2 89 0 1 765 644 272 5 27 chr5 23593197 23593382 -128943877 + B3 SINE B2 36 216 0 1 765 23 54 0 0 chr5 23593384 23593421 -128943838 + AT_rich Low_complexity Low_complexity 1 37 0 1 765 252 352 11 11 chr5 23593436 23593525 -128943734 + PB1D10 SINE Alu 26 114 -3 1 765 260 308 48 96 chr5 23593704 23594004 -128943255 - L1MA10 LINE L1 -5 6329 5909 1 765 273 57 0 0 chr5 23594278 23594313 -128942946 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 765 249 211 0 55 chr5 23594328 23594383 -128942876 + Charlie12 DNA MER1_type 2819 2870 -3 1 765 698 170 76 13 chr5 23594387 23594579 -128942680 - B2_Mm2 SINE B2 -7 209 1 1 765 444 299 162 24 chr5 23594694 23595058 -128942201 - L1M5 LINE L1 -365 5799 5382 1 765 4186 216 72 47 chr5 23595054 23596087 -128941172 - Lx9 LINE L1 -153 7491 6433 1 765 4474 145 79 7 chr5 23596173 23596943 -128940316 + Lx2B LINE L1 6175 7000 0 1 765 591 308 58 0 chr5 23597071 23597279 -128939980 - L1M4 LINE L1 -6309 233 14 1 765 241 274 292 15 chr5 23597366 23597503 -128939756 - Arthur1B DNA Tip100 -621 604 430 1 765 556 316 103 21 chr5 23597545 23597836 -128939423 - Arthur1B DNA Tip100 -901 324 10 1 765 665 302 70 52 chr5 23598342 23598614 -128938645 - MER70B LTR ERVL -135 443 167 1 765 3698 189 47 223 chr5 23598894 23599904 -128937355 - RMER1A Other Other -9 1057 45 1 765 3038 42 0 3 chr5 23599904 23600262 -128936997 + IAPEY2_LTR LTR ERVK 1 357 0 1 765 3440 189 47 223 chr5 23600262 23600534 -128936725 - RMER1B Other Other -787 279 1 1 765 656 133 71 0 chr5 23601028 23601141 -128936118 - B1_Mus1 SINE Alu 0 148 28 1 765 552 318 107 60 chr5 23601377 23601914 -128935345 - RMER13A LTR ERVK -229 679 91 1 765 1723 171 60 81 chr5 23602205 23602588 -128934671 - ORR1C1 LTR MaLR 0 378 4 1 765 261 0 0 0 chr5 23602588 23602617 -128934642 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 1 765 243 0 0 0 chr5 23602627 23602654 -128934605 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 765 198 0 0 0 chr5 23602654 23602675 -128934584 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 765 327 290 54 0 chr5 23602675 23602768 -128934491 - RSINE1 SINE B4 -66 99 2 1 765 4836 221 32 44 chr5 23603478 23604631 -128932628 + Lx6 LINE L1 6145 7283 -177 1 765 243 259 48 24 chr5 23604690 23604773 -128932486 + Lx8 LINE L1 7202 7286 -187 1 765 399 41 0 0 chr5 23604814 23604863 -128932396 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 765 1617 36 0 10 chr5 23605009 23605203 -128932056 + B2_Mm1a SINE B2 2 193 0 1 765 22 0 0 0 chr5 23605537 23605559 -128931700 + AT_rich Low_complexity Low_complexity 1 22 0 1 765 186 250 104 13 chr5 23606082 23606159 -128931100 - L2c LINE L2 -16 3371 3288 1 765 300 111 0 0 chr5 23606691 23606745 -128930514 + (CGGTG)n Simple_repeat Simple_repeat 1 54 0 1 765 288 137 0 0 chr5 23608299 23608350 -128928909 - ORR1B2-int LTR MaLR -1032 931 881 2 765 236 111 0 22 chr5 23608356 23608402 -128928857 - B1_Mm SINE Alu 0 147 103 2 765 1629 189 134 15 chr5 23608405 23608463 -128928796 - ORR1B2-int LTR MaLR -664 845 760 2 765 552 256 0 31 chr5 23608463 23608592 -128928667 - B1_Mus2 SINE Alu -21 126 2 2 765 1629 189 134 15 chr5 23608592 23608917 -128928342 - ORR1B2-int LTR MaLR -664 759 273 2 765 3152 99 80 20 chr5 23608943 23609668 -128927591 - RLTR13D1 LTR ERVK -25 998 1 2 765 864 167 83 0 chr5 23609668 23609859 -128927400 - ORR1B2-int LTR MaLR -1231 278 72 2 765 1279 158 192 11 chr5 23609857 23610138 -128927121 - ORR1B2 LTR MaLR -31 336 5 2 765 709 253 20 49 chr5 23610810 23611014 -128926245 - B3A SINE B2 0 198 1 2 765 282 258 54 43 chr5 23611454 23611547 -128925712 - BC1_Mm scRNA scRNA -45 107 14 2 765 274 307 50 44 chr5 23611869 23612029 -128925230 - L1M5 LINE L1 -459 5714 5554 2 765 1228 179 81 4 chr5 23612433 23612656 -128924603 - RMER21B LTR ERV1 -78 764 524 2 765 1232 152 232 119 chr5 23612656 23613052 -128924207 + RMER6B LTR ERVK 1 441 -20 2 765 2571 168 43 159 chr5 23613052 23613135 -128924124 - RMER21A LTR ERV1 -313 634 561 2 765 1170 48 0 14 chr5 23613135 23613282 -128923977 + B1_Mus2 SINE Alu 2 146 -1 2 765 2571 168 43 159 chr5 23613282 23613915 -128923344 - RMER21A LTR ERV1 -387 560 1 2 765 601 291 86 11 chr5 23614283 23614561 -128922698 - Lx8 LINE L1 -529 6944 6646 2 765 1240 96 0 0 chr5 23614579 23614746 -128922513 - B2_Mm2 SINE B2 -26 169 3 2 765 340 257 28 75 chr5 23614747 23614899 -128922360 - ORR1D2 LTR MaLR -59 311 157 2 765 334 287 75 82 chr5 23614900 23615533 -128921726 - L1_Rod LINE L1 -4225 1622 994 2 765 4016 147 128 77 chr5 23615919 23616820 -128920439 + RMER21A LTR ERV1 1 947 0 2 765 495 331 131 97 chr5 23617035 23617510 -128919749 - MTE-int LTR MaLR -705 875 385 2 765 557 215 33 118 chr5 23617547 23617700 -128919559 + B1_Mur2 SINE Alu 10 149 0 2 765 1211 90 62 0 chr5 23617775 23617953 -128919306 - B2_Mm2 SINE B2 -5 190 2 2 765 3342 162 15 14 chr5 23618041 23618635 -128918624 - RLTR17 LTR ERVK 0 692 98 2 765 751 150 104 15 chr5 23618997 23619132 -128918127 - B1_Mus2 SINE Alu 0 147 1 2 765 312 27 0 0 chr5 23619986 23620023 -128917236 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 765 297 0 0 0 chr5 23620027 23620060 -128917199 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 765 231 211 27 27 chr5 23620692 23620765 -128916494 + GA-rich Low_complexity Low_complexity 2 74 0 2 765 588 134 0 0 chr5 23621036 23621133 -128916126 + (TTCC)n Simple_repeat Simple_repeat 1 97 0 2 765 416 321 40 73 chr5 23621162 23621464 -128915795 - B4A SINE B4 0 292 1 2 765 1118 206 52 138 chr5 23621563 23621963 -128915296 + ORR1B2 LTR MaLR 2 367 0 2 765 1955 205 37 7 chr5 23621963 23622366 -128914893 + ORR1B2-int LTR MaLR 1 415 -955 2 765 565 205 53 18 chr5 23622366 23622480 -128914779 + RMER10A LTR ERVL 1 118 -324 2 765 899 223 101 67 chr5 23622470 23622797 -128914462 - RMER10A LTR ERVL -104 338 1 2 765 863 237 5 16 chr5 23622798 23622991 -128914268 + ORR1B2-int LTR MaLR 412 602 -768 2 765 2432 214 73 32 chr5 23623010 23623595 -128913664 + ORR1B2-int LTR MaLR 668 1276 -94 2 765 234 0 0 0 chr5 23623595 23623621 -128913638 + (T)n Simple_repeat Simple_repeat 1 26 0 2 765 674 128 23 1 chr5 23624546 23624666 -128912593 + ORR1B2-int LTR MaLR 1265 1370 0 2 765 498 186 39 10 chr5 23624666 23624745 -128912514 + ORR1B2 LTR MaLR 23 104 -270 2 765 773 68 5 0 chr5 23624745 23624858 -128912401 + B1_Mus2 SINE Alu 3 119 -29 2 765 183 42 0 0 chr5 23624863 23624887 -128912372 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 765 429 20 0 0 chr5 23624910 23624960 -128912299 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 2 765 647 200 95 61 chr5 23624961 23625208 -128912051 + ORR1C2 LTR MaLR 48 381 -3 2 765 2103 182 26 10 chr5 23625229 23625617 -128911642 + ORR1B1 LTR MaLR 1 394 0 2 765 1569 241 50 32 chr5 23625802 23626300 -128910959 - MYSERV-int LTR ERVK -1695 4855 4349 2 765 1608 139 28 83 chr5 23626306 23626688 -128910571 - ORR1A3 LTR MaLR -23 351 1 2 765 7429 56 14 1 chr5 23626688 23627957 -128909302 + L1_Mus1 LINE L1 5286 6567 0 2 765 357 299 58 48 chr5 23627963 23628170 -128909089 - MYSERV-int LTR ERVK -4587 4372 4164 2 765 885 288 13 35 chr5 23628206 23628516 -128908743 - MurERV4-int LTR ERVK -423 4837 4535 2 765 2740 112 91 39 chr5 23628787 23629280 -128907979 - MURVY-LTR LTR ERV1 0 519 1 2 765 917 214 69 112 chr5 23630346 23630694 -128906565 - RLTR15 LTR ERVK -26 333 1 2 765 250 275 19 131 chr5 23630993 23631148 -128906111 + B3 SINE B2 2 142 -56 2 765 214 281 31 15 chr5 23631255 23631320 -128905939 + (CATG)n Simple_repeat Simple_repeat 3 68 0 2 765 615 196 251 0 chr5 23631477 23631640 -128905619 + B3 SINE B2 1 204 -12 2 765 240 276 34 11 chr5 23631898 23631986 -128905273 + L4 LINE RTE 1322 1411 -618 2 765 232 336 47 63 chr5 23632091 23632218 -128905041 + L4 LINE RTE 1644 1768 -261 2 765 386 288 59 0 chr5 23632331 23632449 -128904810 - B1_Mm SINE Alu 0 147 23 2 765 285 243 78 70 chr5 23633029 23633144 -128904115 - PB1D10 SINE Alu -1 116 1 2 765 227 290 0 42 chr5 23633082 23633154 -128904105 - B4 SINE B4 -148 144 76 2 765 180 0 0 0 chr5 23633945 23633965 -128903294 + (T)n Simple_repeat Simple_repeat 1 20 0 2 765 313 273 259 25 chr5 23635072 23635230 -128902029 + B3A SINE B2 1 195 -3 2 765 239 356 0 29 chr5 23635418 23635439 -128901820 - BC1_Mm scRNA scRNA -37 115 97 2 765 3329 33 2 10 chr5 23635439 23635838 -128901421 - MTA_Mm LTR MaLR 0 396 1 2 765 368 290 0 5 chr5 23635838 23635922 -128901337 - ID4_ SINE ID -56 96 13 2 765 327 254 27 2 chr5 23636010 23636089 -128901170 + PB1D7 SINE Alu 32 117 -10 2 765 484 256 117 29 chr5 23636298 23636435 -128900824 + B1F2 SINE Alu 1 149 0 2 765 394 230 51 120 chr5 23637199 23637357 -128899902 - B1_Mur1 SINE Alu 0 149 3 2 765 1456 65 16 0 chr5 23637801 23637987 -128899272 - B2_Mm2 SINE B2 -6 189 1 2 765 716 269 64 6 chr5 23638125 23638297 -128898962 - B3 SINE B2 -34 182 1 2 765 736 256 35 10 chr5 23638787 23638988 -128898271 + B3 SINE B2 1 206 -10 2 765 230 299 21 84 chr5 23639214 23639309 -128897950 + MT2B2 LTR ERVL 152 240 -344 2 765 462 290 10 0 chr5 23639236 23639336 -128897923 + PB1D10 SINE Alu 10 110 -7 2 765 276 411 62 8 chr5 23639385 23639515 -128897744 - Tigger13a DNA MER2_type -603 168 32 2 765 473 158 178 0 chr5 23639559 23639660 -128897599 + B1_Mur1 SINE Alu 2 120 -29 2 765 1385 66 11 0 chr5 23639805 23639988 -128897271 - B2_Mm1t SINE B2 -8 185 1 2 765 478 229 114 0 chr5 23640192 23640297 -128896962 - RSINE1 SINE B4 -45 120 4 2 765 332 337 0 0 chr5 23640643 23640738 -128896521 - PB1D7 SINE Alu 0 120 26 2 765 247 182 0 0 chr5 23641518 23641562 -128895697 + MLT1D LTR MaLR 449 492 -13 2 765 280 311 57 40 chr5 23641712 23641836 -128895423 + PB1 SINE Alu 2 127 0 2 765 1938 171 83 16 chr5 23642877 23643262 -128893997 + MTD LTR MaLR 1 411 -8 2 765 432 286 74 13 chr5 23643340 23643570 -128893689 + L1MC3 LINE L1 7422 7665 -120 2 765 239 139 0 0 chr5 23643609 23643645 -128893614 - U2 snRNA snRNA -152 36 1 2 765 492 315 163 35 chr5 23644675 23644848 -128892411 - HAL1 LINE L1 -570 1937 1747 2 765 300 275 45 27 chr5 23644848 23644960 -128892299 - PB1D10 SINE Alu 0 117 4 2 765 492 315 163 35 chr5 23644960 23645190 -128892069 - HAL1 LINE L1 -761 1746 1482 2 765 243 0 0 0 chr5 23645194 23645221 -128892038 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 765 414 100 0 0 chr5 23645286 23645346 -128891913 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 765 260 349 74 0 chr5 23646243 23646392 -128890867 - MER5A1 DNA MER1_type -5 161 2 2 765 244 300 138 0 chr5 23646421 23646501 -128890758 - MER5B DNA MER1_type -67 111 21 2 765 228 314 53 85 chr5 23646505 23646599 -128890660 + ID_B1 SINE B4 81 171 -53 2 765 234 333 55 73 chr5 23646520 23646630 -128890629 + PB1D10 SINE Alu 10 117 0 2 765 224 224 0 0 chr5 23648348 23648406 -128888853 + A-rich Low_complexity Low_complexity 1 58 0 2 765 522 310 211 21 chr5 23648443 23648680 -128888579 + B4A SINE B4 6 287 -5 2 765 875 149 0 26 chr5 23648759 23648911 -128888348 - B1_Mur4 SINE Alu 0 150 3 2 765 359 343 41 35 chr5 23649679 23649824 -128887435 - MER58A DNA MER1_type 0 224 79 2 765 289 281 38 136 chr5 23650750 23650882 -128886377 + PB1 SINE Alu 3 121 -6 2 765 1052 252 32 87 chr5 23651190 23651214 -128886045 - MT2B LTR ERVL 0 601 586 2 765 1068 164 21 68 chr5 23651214 23651450 -128885809 - URR1B DNA MER1_type 0 225 1 2 765 1052 252 32 87 chr5 23651450 23651488 -128885771 - MT2B LTR ERVL -16 585 555 2 765 216 0 0 0 chr5 23651488 23651512 -128885747 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 765 1052 214 81 117 chr5 23651512 23651941 -128885318 - MT2B LTR ERVL -47 554 1 2 765 485 225 117 0 chr5 23651941 23652050 -128885209 - B3A SINE B2 -76 122 1 2 765 278 294 50 109 chr5 23652659 23652880 -128884379 - RLTR41 LTR ERV1 -53 393 186 2 765 1567 31 5 10 chr5 23653202 23653394 -128883865 + B2_Mm1a SINE B2 2 192 -1 2 765 930 139 0 7 chr5 23654228 23654373 -128882886 + B1_Mus1 SINE Alu 5 148 0 2 765 252 133 0 48 chr5 23654397 23654460 -128882799 + GA-rich Low_complexity Low_complexity 2 61 0 2 765 398 241 199 48 chr5 23655380 23655546 -128881713 + B3A SINE B2 1 191 -7 2 765 1333 77 11 6 chr5 23655714 23655897 -128881362 - ORR1B1 LTR MaLR 0 394 211 2 765 44 63 0 0 chr5 23655954 23656033 -128881226 + AT_rich Low_complexity Low_complexity 1 79 0 2 765 195 42 0 0 chr5 23656083 23656107 -128881152 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 765 207 0 0 0 chr5 23656167 23656190 -128881069 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 765 1007 45 52 7 chr5 23656193 23656328 -128880931 - B1_Mm SINE Alu -6 141 1 2 765 5156 84 89 23 chr5 23656864 23657961 -128879298 - L1VL2 LINE L1 -2347 1268 83 2 765 1013 100 102 40 chr5 23657969 23658146 -128879113 - B2_Mm2 SINE B2 -7 188 1 2 765 1016 108 210 5 chr5 23658147 23658333 -128878926 - ORR1B1 LTR MaLR -169 225 2 2 765 297 294 86 11 chr5 23658430 23658523 -128878736 - PB1D10 SINE Alu -5 112 13 2 765 300 111 0 0 chr5 23658575 23658620 -128878639 + (GCTG)n Simple_repeat Simple_repeat 4 48 0 2 765 667 286 84 15 chr5 23658624 23658826 -128878433 - ID_B1 SINE B4 -8 216 1 3 765 207 0 0 0 chr5 23659047 23659070 -128878189 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 765 29 0 0 0 chr5 23659173 23659202 -128878057 + AT_rich Low_complexity Low_complexity 1 29 0 3 765 343 250 0 0 chr5 23659244 23659312 -128877947 - tRNA-Ala-GCG tRNA tRNA -2 73 6 3 765 299 292 0 0 chr5 23659249 23659321 -128877938 - ID4 SINE ID -9 74 3 3 765 223 161 0 46 chr5 23659591 23659656 -128877603 + T-rich Low_complexity Low_complexity 2 63 0 3 765 1160 197 14 9 chr5 23659664 23659879 -128877380 - B3 SINE B2 0 216 1 3 765 738 216 0 33 chr5 23659959 23660112 -128877147 + B1_Mur1 SINE Alu 1 148 -1 3 765 838 131 281 4 chr5 23660215 23660460 -128876799 - ORR1B1 LTR MaLR -63 315 3 3 765 1024 97 21 0 chr5 23661722 23661866 -128875393 + B1_Mus2 SINE Alu 1 147 0 3 765 380 234 16 234 chr5 23661932 23662116 -128875143 + B1_Mur2 SINE Alu 1 144 -5 3 765 284 206 48 0 chr5 23662618 23662681 -128874578 - PB1D10 SINE Alu -10 107 42 3 765 1202 156 61 9 chr5 23663421 23663635 -128873624 - ORR1B2 LTR MaLR -8 359 135 3 765 394 289 35 9 chr5 23663951 23664066 -128873193 + B1F2 SINE Alu 24 141 -8 3 765 180 0 0 0 chr5 23665030 23665050 -128872209 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 765 471 231 16 96 chr5 23666780 23666864 -128870395 - L1MB8 LINE L1 -9 6169 6089 3 765 1358 82 11 0 chr5 23666864 23667046 -128870213 + B2_Mm1a SINE B2 1 184 -9 3 765 540 234 16 95 chr5 23667046 23667148 -128870111 - L1MB8 LINE L1 -90 6088 5998 3 765 672 266 26 78 chr5 23667435 23667627 -128869632 - B3 SINE B2 -6 189 8 3 765 299 250 44 0 chr5 23667627 23667695 -128869564 - B1_Mus1 SINE Alu -68 80 10 3 765 352 241 132 18 chr5 23667704 23667818 -128869441 - MLT1C LTR MaLR -335 132 6 3 765 1404 102 111 0 chr5 23667864 23668108 -128869151 - RMER6A LTR ERVK 0 756 486 3 765 1271 27 0 7 chr5 23668170 23668319 -128868940 + B1_Mus1 SINE Alu 1 148 0 3 765 597 257 13 13 chr5 23668361 23668511 -128868748 + B3 SINE B2 42 191 -25 3 765 988 274 76 22 chr5 23669534 23669917 -128867342 - MTEb LTR MaLR -13 366 1 3 765 380 194 202 11 chr5 23670161 23670255 -128867004 + PB1D9 SINE Alu 8 119 -1 3 765 235 198 283 0 chr5 23670287 23670393 -128866866 - LTR65 LTR ERV1 -330 339 204 3 765 228 135 0 0 chr5 23670641 23670678 -128866581 + (TTCGGG)n Simple_repeat Simple_repeat 6 42 0 3 765 895 162 0 20 chr5 23671493 23671644 -128865615 - B1_Mur4 SINE Alu 0 150 3 3 765 1313 121 39 9 chr5 23672013 23672246 -128865013 - RMER6A LTR ERVK -409 347 108 3 765 515 231 17 25 chr5 23672830 23672950 -128864309 - PB1D9 SINE Alu 0 120 2 3 765 320 191 11 45 chr5 23673805 23673893 -128863366 - PB1D10 SINE Alu -1 116 32 3 765 528 16 0 0 chr5 23673956 23674017 -128863242 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 765 783 195 0 0 chr5 23674175 23674303 -128862956 + B3 SINE B2 3 130 -86 3 765 21 0 0 0 chr5 23674521 23674542 -128862717 + AT_rich Low_complexity Low_complexity 1 21 0 3 765 350 258 176 8 chr5 23674637 23674762 -128862497 - B1F1 SINE Alu -1 148 3 3 765 851 88 22 0 chr5 23674822 23674958 -128862301 + B1_Mus1 SINE Alu 10 148 0 3 765 246 254 0 0 chr5 23675245 23675304 -128861955 - ID4 SINE ID -11 72 14 3 765 487 249 71 38 chr5 23676267 23676336 -128860923 - MER53 DNA hAT 0 193 129 3 765 1384 66 38 16 chr5 23676336 23676521 -128860738 + B2_Mm2 SINE B2 3 191 -4 3 765 487 249 71 38 chr5 23676521 23676635 -128860624 - MER53 DNA hAT -65 128 4 3 765 385 243 100 0 chr5 23676668 23676808 -128860451 + Charlie1a DNA MER1_type 70 223 -1232 3 765 498 288 57 77 chr5 23677026 23677274 -128859985 + Charlie1a DNA MER1_type 487 729 -726 3 765 722 57 9 0 chr5 23677283 23677389 -128859870 + B1_Mus2 SINE Alu 41 147 0 3 765 261 137 68 0 chr5 23677423 23677496 -128859763 + GA-rich Low_complexity Low_complexity 1 78 0 3 765 402 247 192 66 chr5 23677595 23677752 -128859507 + Charlie1a DNA MER1_type 810 974 -481 3 765 642 190 9 0 chr5 23677752 23677868 -128859391 + PB1D9 SINE Alu 3 119 -1 3 765 402 247 192 66 chr5 23677868 23677996 -128859263 + Charlie1a DNA MER1_type 975 1131 -324 3 765 411 365 13 6 chr5 23678026 23678183 -128859076 + B3A SINE B2 2 159 -39 3 765 360 0 0 0 chr5 23678187 23678227 -128859032 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 765 710 208 0 7 chr5 23678334 23678479 -128858780 + B1_Mur4 SINE Alu 7 150 0 3 765 1065 259 71 31 chr5 23678529 23678883 -128858376 - MTD LTR MaLR 0 419 52 3 765 231 221 0 181 chr5 23678920 23679014 -128858245 + MER105 DNA DNA 109 185 -19 3 765 2327 31 28 3 chr5 23679639 23679926 -128857333 + L1Md_F3 LINE L1 6291 6584 0 3 765 530 238 197 0 chr5 23680051 23680198 -128857061 + B3 SINE B2 25 200 -16 3 765 213 228 17 17 chr5 23680280 23680338 -128856921 - ID4_ SINE ID -25 58 1 3 765 1359 62 80 0 chr5 23680428 23680587 -128856672 + B2_Mm1t SINE B2 2 160 -33 3 765 495 0 0 0 chr5 23680587 23680642 -128856617 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 3 765 1359 62 80 0 chr5 23680642 23680658 -128856601 + B2_Mm1t SINE B2 161 189 -4 3 765 1559 156 71 91 chr5 23681455 23681808 -128855451 + ORR1B1 LTR MaLR 41 386 -8 3 765 3056 112 122 9 chr5 23681812 23682387 -128854872 + ORR1B1-int LTR MaLR 1 640 -1323 3 765 273 122 0 0 chr5 23682387 23682428 -128854831 + MERVL_2A-int LTR ERVL 5719 5759 -2 3 765 691 168 35 104 chr5 23682471 23682644 -128854615 + MT2B LTR ERVL 127 287 -314 3 765 3438 124 16 6 chr5 23682603 23683229 -128854030 + ORR1B1-int LTR MaLR 718 1349 -614 3 765 513 53 0 26 chr5 23683231 23683309 -128853950 - ORR1A4 LTR MaLR -253 76 1 3 765 349 240 88 20 chr5 23683957 23684059 -128853200 - B1_Mur2 SINE Alu 0 149 41 3 765 396 153 78 48 chr5 23684082 23684185 -128853074 - PB1D9 SINE Alu 0 120 15 3 765 959 190 72 0 chr5 23684218 23684413 -128852846 - B3 SINE B2 -7 209 1 3 765 203 0 37 0 chr5 23684715 23684742 -128852517 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 3 765 796 26 114 0 chr5 23684745 23684859 -128852400 - B1_Mus2 SINE Alu 0 147 21 3 765 402 312 62 0 chr5 23684886 23685014 -128852245 + B1_Mur2 SINE Alu 1 136 -13 3 765 585 0 0 0 chr5 23685014 23685079 -128852180 + (TAAA)n Simple_repeat Simple_repeat 4 68 0 3 765 1001 126 21 21 chr5 23685679 23685865 -128851394 + URR1A DNA MER1_type 35 220 -6 3 765 330 270 44 11 chr5 23685938 23686028 -128851231 + B1_Mur3 SINE Alu 2 94 -55 3 765 438 192 189 16 chr5 23687177 23687304 -128849955 - B1F2 SINE Alu 0 149 1 3 765 262 357 20 30 chr5 23687344 23687445 -128849814 + PB1D10 SINE Alu 1 100 -17 3 765 681 191 121 35 chr5 23688843 23689017 -128848242 - B3 SINE B2 -27 189 1 3 765 480 266 197 62 chr5 23689063 23689307 -128847952 + B4A SINE B4 16 292 0 3 765 1039 170 16 50 chr5 23689454 23689738 -128847521 - RMER19B LTR ERVK -666 236 1 3 765 2180 186 107 38 chr5 23689739 23690293 -128846966 + RMER13A LTR ERVK 269 860 0 3 765 636 144 0 0 chr5 23690294 23690391 -128846868 - Lx4A LINE L1 -807 6251 6155 3 765 318 164 16 0 chr5 23690389 23690450 -128846809 + Lx4A LINE L1 6087 6148 -910 3 765 352 136 46 160 chr5 23690451 23690465 -128846794 - ORR1D1 LTR MaLR -258 116 104 3 765 1255 34 0 0 chr5 23690465 23690611 -128846648 - B1_Mus2 SINE Alu -1 146 1 3 765 352 136 46 160 chr5 23690611 23690727 -128846532 - ORR1D1 LTR MaLR -271 103 1 3 765 1929 124 135 25 chr5 23690852 23691207 -128846052 + ORR1B1 LTR MaLR 1 394 0 3 765 245 269 35 78 chr5 23691408 23691549 -128845710 + ORR1E LTR MaLR 52 186 -173 3 765 4145 151 77 80 chr5 23691603 23692501 -128844758 - RMER19B LTR ERVK -7 895 1 3 765 194 0 39 0 chr5 23692593 23692619 -128844640 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 765 810 190 0 14 chr5 23692632 23692771 -128844488 - B1_Mur1 SINE Alu -8 141 5 3 765 2788 139 36 83 chr5 23693941 23694530 -128842729 - RLTR31_Mm LTR ERVK 0 561 1 3 765 770 270 11 0 chr5 23694536 23694714 -128842545 - B3 SINE B2 -36 180 1 3 765 719 249 75 0 chr5 23694727 23694928 -128842331 - B3 SINE B2 0 216 1 3 765 297 182 0 0 chr5 23695079 23695145 -128842114 - B3 SINE B2 0 216 151 3 765 534 254 46 0 chr5 23695151 23695281 -128841978 - B3 SINE B2 -34 182 47 3 765 249 205 102 86 chr5 23696169 23696297 -128840962 - L1ME2 LINE L1 -61 6103 5974 3 765 265 206 28 42 chr5 23696412 23696483 -128840776 - B4 SINE B4 0 292 223 3 765 225 206 87 14 chr5 23696813 23696882 -128840377 - B4 SINE B4 -72 220 147 3 765 441 0 0 0 chr5 23697095 23697144 -128840115 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 765 264 289 80 19 chr5 23697167 23697329 -128839930 + MER53 DNA hAT 17 188 -5 3 765 3366 155 30 9 chr5 23697340 23697912 -128839347 - RMER1B Other Other -4 1062 479 3 765 265 226 13 20 chr5 23697927 23698076 -128839183 + CT-rich Low_complexity Low_complexity 2 149 0 3 765 254 231 11 34 chr5 23698141 23698320 -128838939 + CT-rich Low_complexity Low_complexity 2 176 0 3 765 263 193 0 0 chr5 23698339 23698396 -128838863 - RMER1B Other Other -567 499 443 3 765 393 333 58 55 chr5 23698675 23698967 -128838292 + MuRRS4-int LTR ERV1 1313 1605 -3458 3 765 1274 191 107 25 chr5 23699240 23699595 -128837664 + RMER16 LTR ERVK 150 533 0 3 765 6940 159 102 26 chr5 23699595 23699849 -128837410 + RMER16-int LTR ERVK 1 254 -5152 3 765 915 59 0 0 chr5 23699849 23699967 -128837292 + (GA)n Simple_repeat Simple_repeat 1 118 0 3 765 6940 159 102 26 chr5 23699967 23701052 -128836207 + RMER16-int LTR ERVK 255 1440 -3966 3 765 416 255 18 67 chr5 23701205 23701369 -128835890 + MuRRS4-int LTR ERV1 4357 4512 -3266 3 765 1378 67 5 37 chr5 23701535 23701722 -128835537 + B2_Mm2 SINE B2 1 181 -14 3 765 1371 264 22 8 chr5 23701836 23702243 -128835016 + MuRRS4-int LTR ERV1 3614 3954 -1109 3 765 685 205 98 19 chr5 23702477 23702691 -128834568 - RLTR22_Mur LTR ERVK 0 1848 1618 3 765 2824 169 92 99 chr5 23702699 23702969 -128834290 - RMER12 LTR ERVK -242 1080 789 3 765 258 32 0 0 chr5 23702969 23703000 -128834259 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 3 765 2824 169 92 99 chr5 23703000 23703435 -128833824 - RMER12 LTR ERVK -534 788 385 3 765 1200 48 0 13 chr5 23703435 23703584 -128833675 - B1_Mus1 SINE Alu 0 148 2 3 765 2824 169 92 99 chr5 23703584 23703692 -128833567 - RMER12 LTR ERVK -938 384 272 3 765 3261 176 38 18 chr5 23703692 23704321 -128832938 - RLTR26 LTR ERVK 0 642 1 4 765 563 130 297 0 chr5 23704327 23704465 -128832794 - RLTR22_Mur LTR ERVK -1578 270 92 4 765 10308 55 1 7 chr5 23704471 23705754 -128831505 + L1_Mm LINE L1 4311 5586 -297 4 765 8077 48 5 3 chr5 23705754 23706734 -128830525 + L1Md_F2 LINE L1 5587 6568 -14 4 765 408 157 12 24 chr5 23706752 23706837 -128830422 - RLTR22_Mur LTR ERVK -1764 84 1 4 765 423 56 0 0 chr5 23706926 23706980 -128830279 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 765 495 174 0 0 chr5 23707081 23707196 -128830063 + (TG)n Simple_repeat Simple_repeat 2 116 0 4 765 186 71 0 0 chr5 23707325 23707353 -128829906 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 4 765 516 210 0 0 chr5 23707582 23707749 -128829510 + (TG)n Simple_repeat Simple_repeat 2 168 0 4 765 1055 117 27 22 chr5 23707868 23707890 -128829369 - B2_Mm2 SINE B2 -7 188 164 4 765 216 0 0 0 chr5 23707890 23707914 -128829345 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 765 1055 117 27 22 chr5 23707914 23708074 -128829185 - B2_Mm2 SINE B2 -32 163 6 4 765 401 116 14 0 chr5 23708788 23708857 -128828402 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 765 25 31 0 0 chr5 23708877 23708909 -128828350 + AT_rich Low_complexity Low_complexity 1 32 0 4 765 502 278 66 56 chr5 23708909 23709229 -128828030 - ETnERV-int LTR ERVK -2988 326 4 4 765 2716 127 7 37 chr5 23709231 23709664 -128827595 - RLTR9B2 LTR ERVK 0 420 1 4 765 201 322 122 0 chr5 23710042 23710157 -128827102 + MIR SINE MIR 13 141 -121 4 765 3730 24 21 2 chr5 23710232 23710660 -128826599 + RLTR10C LTR ERVK 1 436 0 4 765 293 286 17 55 chr5 23710864 23711045 -128826214 + (CACTC)n Simple_repeat Simple_repeat 3 176 0 4 765 1681 256 91 20 chr5 23711988 23712410 -128824849 - Lx8 LINE L1 -362 7111 6666 4 765 2814 155 63 16 chr5 23712410 23712914 -128824345 - RLTR12B LTR ERVK 0 528 1 4 765 1681 256 91 20 chr5 23712914 23712985 -128824274 - Lx8 LINE L1 -808 6665 6583 4 765 2630 162 115 21 chr5 23712991 23713565 -128823694 - RMER13A LTR ERVK 0 860 233 4 765 493 153 0 0 chr5 23713559 23713644 -128823615 - RMER13A LTR ERVK -775 85 1 4 765 359 248 186 0 chr5 23713665 23713778 -128823481 - Lx8 LINE L1 -937 6536 6403 4 765 335 222 14 0 chr5 23713921 23713993 -128823266 + ID_B1 SINE B4 103 175 -49 4 765 373 210 30 0 chr5 23714582 23714698 -128822561 - ID4 SINE ID -18 134 12 4 765 906 127 135 31 chr5 23714977 23715140 -128822119 + B2_Mm2 SINE B2 2 181 -14 4 765 336 292 33 8 chr5 23715977 23716098 -128821161 - MIR SINE MIR -118 144 21 4 765 3217 166 123 10 chr5 23716114 23716168 -128821091 - RMER19B LTR ERVK -145 757 693 4 765 608 26 0 13 chr5 23716168 23716247 -128821012 + (CAG)n Simple_repeat Simple_repeat 1 78 0 4 765 3217 166 123 10 chr5 23716247 23716872 -128820387 - RMER19B LTR ERVK -210 692 1 4 765 183 42 0 0 chr5 23717409 23717433 -128819826 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 765 495 0 0 0 chr5 23717686 23717741 -128819518 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 765 317 283 338 0 chr5 23718847 23718992 -128818267 + ID_B1 SINE B4 18 211 -13 4 765 276 30 0 0 chr5 23718992 23719025 -128818234 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 4 765 464 207 175 35 chr5 23719095 23719295 -128817964 + L1MC4 LINE L1 7444 7671 -371 4 765 325 147 6 0 chr5 23719904 23719966 -128817293 - ORR1B1 LTR MaLR 0 378 267 4 765 792 279 107 4 chr5 23719967 23720237 -128817022 + RLTR16 LTR ERVK 1 298 -207 4 765 491 165 0 0 chr5 23720442 23720527 -128816732 + ORR1B1-int LTR MaLR 93 177 -1332 4 765 506 163 41 0 chr5 23720518 23720616 -128816643 - ORR1B1-int LTR MaLR -1407 102 1 4 765 2053 138 49 8 chr5 23720614 23720979 -128816280 - ORR1B1 LTR MaLR -2 392 13 4 765 363 227 52 36 chr5 23720989 23721116 -128816143 - L1MB5 LINE L1 -248 6064 5934 4 765 1610 88 45 11 chr5 23721125 23721390 -128815869 + RLTR4_Mm LTR ERV1 1 274 -468 4 765 2030 42 20 24 chr5 23721367 23721660 -128815599 + RLTR4_Mm LTR ERV1 451 742 0 4 765 17913 19 1 5 chr5 23721660 23723777 -128813482 + RLTR4_MM-int LTR ERV1 1 2110 -5491 4 95 28697 58 4 3 chr5 23723766 23727434 -128809825 + MuLV-int LTR ERV1 3936 7606 0 4 766 1738 88 45 11 chr5 23727436 23727701 -128809558 + RLTR4_Mm LTR ERV1 1 274 -468 4 766 2175 42 20 24 chr5 23727678 23727970 -128809289 + RLTR4_Mm LTR ERV1 451 741 -1 4 766 4157 38 0 0 chr5 23727970 23728442 -128808817 - MT2C_Mm LTR ERVL -3 472 1 4 766 285 264 25 68 chr5 23728448 23728566 -128808693 - L1MB5 LINE L1 -255 5929 5817 4 766 503 300 86 0 chr5 23728579 23728719 -128808540 + ID_B1 SINE B4 11 162 -62 4 766 419 252 20 10 chr5 23729035 23729135 -128808124 + PB1D10 SINE Alu 3 103 -14 4 766 298 329 37 0 chr5 23729192 23729274 -128807985 + RSINE1 SINE B4 12 96 -69 4 766 1343 55 2 5 chr5 23729284 23729721 -128807538 + (CA)n Simple_repeat Simple_repeat 1 435 0 4 766 635 178 64 32 chr5 23730095 23730252 -128807007 + RMER16 LTR ERVK 1 162 -371 4 766 2295 150 8 16 chr5 23730306 23730675 -128806584 + MTC LTR MaLR 1 366 -55 4 766 1198 206 23 47 chr5 23730675 23731017 -128806242 - RMER17C LTR ERVK 0 410 77 4 766 971 176 48 39 chr5 23731015 23731062 -128806197 - RMER17C LTR ERVK -177 233 187 4 766 555 56 0 0 chr5 23731062 23731133 -128806126 + (GGA)n Simple_repeat Simple_repeat 2 72 0 4 766 971 176 48 39 chr5 23731133 23731316 -128805943 - RMER17C LTR ERVK -224 186 1 4 766 365 188 73 24 chr5 23731316 23731364 -128805895 + MTC LTR MaLR 358 409 -12 4 766 654 13 0 0 chr5 23731368 23731443 -128805816 + (TC)n Simple_repeat Simple_repeat 1 75 0 4 766 197 31 94 0 chr5 23731589 23731621 -128805638 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 4 766 234 136 0 0 chr5 23731784 23731828 -128805431 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 766 300 380 64 8 chr5 23732333 23732569 -128804690 + L1MC2 LINE L1 5954 6202 -142 4 766 2018 88 49 7 chr5 23733037 23733322 -128803937 + ORR1A2 LTR MaLR 31 327 0 4 766 470 277 74 46 chr5 23733322 23733520 -128803739 + ID_B1 SINE B4 30 230 -62 4 766 846 261 9 47 chr5 23733641 23733820 -128803439 + B3 SINE B2 6 181 -35 4 766 6677 106 15 65 chr5 23733820 23734897 -128802362 - RLTR13D5 LTR ERVK 0 1023 1 4 766 846 261 9 47 chr5 23734897 23734930 -128802329 + B3 SINE B2 182 210 -6 4 766 2332 151 62 5 chr5 23735422 23735795 -128801464 - ORR1B1 LTR MaLR 0 394 1 4 766 1504 274 113 38 chr5 23736229 23736859 -128800400 - Lx9 LINE L1 -544 7100 6424 4 766 1713 190 108 18 chr5 23736863 23737243 -128800016 - MTD LTR MaLR -2 417 4 4 766 227 181 13 53 chr5 23737341 23737417 -128799842 + (TATAA)n Simple_repeat Simple_repeat 1 73 0 4 766 341 257 1 5 chr5 23739069 23739156 -128798103 + B4 SINE B4 140 223 -69 4 766 349 284 132 53 chr5 23739164 23739360 -128797899 + ID_B1 SINE B4 88 278 -14 4 766 378 155 56 0 chr5 23739445 23739516 -128797743 + HAL1-3A_ME LINE L1 1975 2049 -809 4 766 3396 115 84 32 chr5 23739557 23740113 -128797146 + RMER4B LTR ERVK 1 585 0 4 766 477 196 103 0 chr5 23740113 23740220 -128797039 + MurERV4-int LTR ERVK 1 118 -5142 4 766 201 147 0 0 chr5 23741080 23741114 -128796145 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 4 766 2838 133 136 32 chr5 23741400 23741881 -128795378 - RMER4B LTR ERVK 0 585 49 4 766 1373 56 39 0 chr5 23741881 23742059 -128795200 + B2_Mm1t SINE B2 2 186 -7 4 766 2838 133 136 32 chr5 23742059 23742107 -128795152 - RMER4B LTR ERVK -537 48 1 4 766 416 104 0 15 chr5 23743591 23743659 -128793600 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 766 1055 190 47 69 chr5 23743660 23743892 -128793367 + RMER19A LTR ERVK 511 737 0 4 766 230 0 0 0 chr5 23743892 23743918 -128793341 + RMER1A Other Other 815 840 -190 4 766 394 257 7 97 chr5 23743971 23744126 -128793133 + RLTR15 LTR ERVK 49 189 -170 4 766 362 341 71 34 chr5 23744160 23744427 -128792832 + RLTR15 LTR ERVK 83 359 0 4 766 488 205 34 0 chr5 23744450 23744567 -128792692 + RMER1B Other Other 946 1066 0 4 766 1070 97 9 170 chr5 23745882 23746094 -128791165 + B2_Mm1t SINE B2 2 179 -14 4 766 371 82 379 0 chr5 23746126 23746234 -128791025 + B2_Mm2 SINE B2 47 195 0 4 766 3021 60 34 8 chr5 23747972 23748358 -128788901 + MTA_Mm LTR MaLR 1 396 0 4 766 3887 158 64 28 chr5 23748358 23749081 -128788178 + RMER13B LTR ERVK 157 905 -3 4 766 710 110 23 23 chr5 23749401 23749578 -128787681 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 4 766 298 136 22 22 chr5 23749570 23749660 -128787599 + (TCTG)n Simple_repeat Simple_repeat 2 91 0 4 766 21 0 0 0 chr5 23749758 23749779 -128787480 + AT_rich Low_complexity Low_complexity 1 21 0 4 766 546 272 126 20 chr5 23750546 23750745 -128786514 + RMER15 LTR ERVL 353 572 -3 4 766 1265 72 0 16 chr5 23750803 23750986 -128786273 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 766 394 95 61 31 chr5 23751000 23751098 -128786161 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 4 766 260 245 19 0 chr5 23751777 23751830 -128785429 + ID4 SINE ID 3 56 -27 4 766 2968 46 144 136 chr5 23751851 23752359 -128784900 + RLTR1B LTR ERV1 1 512 0 4 766 306 0 0 0 chr5 23752691 23752725 -128784534 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 766 198 0 0 0 chr5 23752725 23752746 -128784513 + (GA)n Simple_repeat Simple_repeat 1 22 0 4 766 453 241 61 116 chr5 23753299 23753397 -128783862 - MLT1C LTR MaLR -312 155 57 4 766 1255 141 41 32 chr5 23753397 23753617 -128783642 - URR1A DNA MER1_type -4 222 1 4 766 453 241 61 116 chr5 23753617 23753682 -128783577 - MLT1C LTR MaLR -411 56 1 4 766 411 282 34 0 chr5 23753902 23754051 -128783208 + L1M4 LINE L1 4384 4537 -1609 4 766 232 247 161 78 chr5 23754072 23754090 -128783169 - YREP_Mm Unknown Unknown -1484 328 262 4 766 818 121 0 114 chr5 23754090 23754221 -128783038 + B1_Mur2 SINE Alu 4 119 -1 4 766 232 247 161 78 chr5 23754221 23754252 -128783007 - YREP_Mm Unknown Unknown -1484 261 134 4 766 510 283 0 8 chr5 23754237 23754260 -128782999 + ID SINE ID 60 81 -143 4 766 578 207 7 0 chr5 23754260 23754380 -128782879 + PB1D10 SINE Alu 1 124 -23 4 766 1380 249 121 17 chr5 23754396 23754918 -128782341 + L1M4 LINE L1 4621 5196 -950 4 766 353 324 57 7 chr5 23754920 23755060 -128782199 + B1F1 SINE Alu 3 149 0 4 766 300 279 0 0 chr5 23755071 23755139 -128782120 + ID2 SINE ID 2 69 -14 4 766 481 232 22 36 chr5 23755149 23755271 -128781988 + L1M4 LINE L1 5198 5317 -829 4 766 2006 131 121 58 chr5 23755271 23755718 -128781541 + IAPLTR2_Mm LTR ERVK 1 475 0 4 766 481 258 37 27 chr5 23755718 23755793 -128781466 + L1M4 LINE L1 5318 5394 -752 4 766 250 228 0 0 chr5 23756175 23756232 -128781027 + L1M4 LINE L1 5846 5902 -282 4 766 3329 41 10 0 chr5 23756232 23756624 -128780635 + MTA_Mm LTR MaLR 1 396 0 4 766 9583 27 1 0 chr5 23756624 23757721 -128779538 + MTA_Mm-int LTR MaLR 1 1098 0 4 766 3307 30 2 15 chr5 23757721 23757838 -128779421 + MTA_Mm LTR MaLR 1 117 -279 4 766 3117 23 0 0 chr5 23757838 23758184 -128779075 - ORR1A0 LTR MaLR 0 346 1 4 766 3307 30 2 15 chr5 23758184 23758467 -128778792 + MTA_Mm LTR MaLR 118 396 0 4 766 2309 101 87 6 chr5 23759676 23760033 -128777226 + ORR1B1 LTR MaLR 1 386 -8 4 766 279 250 0 0 chr5 23760025 23760089 -128777170 + B3 SINE B2 70 133 -83 4 766 705 24 0 0 chr5 23760098 23760181 -128777078 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 766 405 336 62 21 chr5 23760524 23760764 -128776495 + L1M5 LINE L1 5551 5800 -394 4 766 227 175 0 0 chr5 23761067 23761107 -128776152 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 766 623 265 164 31 chr5 23761192 23761418 -128775841 + B4A SINE B4 2 257 -35 5 766 4468 122 24 13 chr5 23761419 23761740 -128775519 + RLTR13D3 LTR ERVK 1 322 -792 5 766 3035 35 0 0 chr5 23761740 23762086 -128775173 - ORR1A1 LTR MaLR 0 346 1 5 766 4468 132 24 15 chr5 23762086 23762530 -128774729 + RLTR13D3 LTR ERVK 316 765 -268 5 766 216 0 0 0 chr5 23763453 23763477 -128773782 + (A)n Simple_repeat Simple_repeat 1 24 0 5 766 2156 96 51 9 chr5 23763477 23763793 -128773466 + RLTR13D3 LTR ERVK 786 1114 0 5 766 197 209 46 20 chr5 23763823 23763974 -128773285 + (CA)n Simple_repeat Simple_repeat 2 156 0 5 766 461 258 28 1 chr5 23764089 23764216 -128773043 + L1MD2 LINE L1 5573 5702 -742 5 766 310 305 58 66 chr5 23764427 23764564 -128772695 + L1MD2 LINE L1 5997 6132 -227 5 766 223 266 15 15 chr5 23764567 23764632 -128772627 + GA-rich Low_complexity Low_complexity 2 66 0 5 766 528 272 36 14 chr5 23764715 23764853 -128772406 + MTEa LTR MaLR 1 141 -238 5 766 439 298 129 25 chr5 23764937 23765081 -128772178 + MT2A LTR ERVL 268 426 -107 5 766 901 261 141 12 chr5 23765081 23765407 -128771852 + ORR1D2 LTR MaLR 1 368 -2 5 766 439 298 129 25 chr5 23765407 23765503 -128771756 + MT2A LTR ERVL 427 533 0 5 766 814 309 57 30 chr5 23765503 23765799 -128771460 - MLT1A0 LTR MaLR -41 324 21 5 766 834 48 0 0 chr5 23765877 23765982 -128771277 - B1_Mus2 SINE Alu -1 146 42 5 766 347 252 72 80 chr5 23765919 23766057 -128771202 - RLTR25B LTR ERVK -519 509 373 5 766 252 235 18 140 chr5 23766165 23766279 -128770980 + MT2B LTR ERVL 165 264 -337 5 766 449 275 15 22 chr5 23766178 23766312 -128770947 + B1F1 SINE Alu 15 147 -2 5 766 267 366 0 141 chr5 23766450 23766567 -128770692 - RSINE1 SINE B4 0 165 73 5 766 486 0 0 0 chr5 23766567 23766621 -128770638 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 766 267 366 0 141 chr5 23766621 23766694 -128770565 - RSINE1 SINE B4 -93 72 2 5 766 387 0 0 0 chr5 23766702 23766745 -128770514 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 5 766 1293 57 0 0 chr5 23766745 23766903 -128770356 - B2_Mm2 SINE B2 -36 159 2 5 766 226 271 0 33 chr5 23768547 23768608 -128768651 + CT-rich Low_complexity Low_complexity 1 59 0 5 766 834 222 32 59 chr5 23768653 23768873 -128768386 + B3 SINE B2 2 215 -1 5 766 359 257 113 9 chr5 23768891 23768997 -128768262 + PB1D10 SINE Alu 1 117 0 5 766 269 318 35 12 chr5 23769050 23769136 -128768123 + MLT1C LTR MaLR 380 467 0 5 766 443 292 33 67 chr5 23769448 23769628 -128767631 + B4A SINE B4 1 174 -118 5 766 210 216 39 19 chr5 23771205 23771257 -128766002 + PB1 SINE Alu 73 125 -2 5 766 253 318 0 0 chr5 23772090 23772156 -128765103 - B1F SINE Alu -81 68 3 5 766 529 214 8 18 chr5 23773004 23773122 -128764137 + PB1D7 SINE Alu 17 123 -25 5 766 21 0 0 0 chr5 23773208 23773229 -128764030 + AT_rich Low_complexity Low_complexity 1 21 0 5 766 2478 175 47 59 chr5 23773244 23773771 -128763488 - RLTR20B3 LTR ERVK -56 521 1 5 766 3513 162 55 64 chr5 23773781 23774579 -128762680 - MYSERV16_I-int LTR ERVK -14 2312 1516 5 766 465 122 0 0 chr5 23774579 23774653 -128762606 + (CATA)n Simple_repeat Simple_repeat 3 76 0 5 766 3513 162 55 64 chr5 23774653 23774679 -128762580 - MYSERV16_I-int LTR ERVK -811 1515 1496 5 766 722 299 55 73 chr5 23774946 23775328 -128761931 - MTE2b LTR MaLR -2 377 3 5 766 1359 50 0 0 chr5 23776018 23776198 -128761061 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 766 2543 161 163 0 chr5 23776299 23776784 -128760475 + RLTR12A LTR ERVK 1 564 -4 5 766 544 279 65 22 chr5 23777000 23777139 -128760120 + RSINE1 SINE B4 4 148 -17 5 766 272 239 79 11 chr5 23777164 23777253 -128760006 - B4A SINE B4 -196 96 2 5 766 305 272 194 34 chr5 23777517 23777566 -128759693 - CYRA11_Mm Unknown Y-chromosome -235 382 180 5 766 741 135 40 0 chr5 23777566 23777692 -128759567 + URR1B DNA MER1_type 86 216 -9 5 766 260 326 11 21 chr5 23777691 23777785 -128759474 - MTE-int LTR MaLR -70 1510 1418 5 766 346 241 11 33 chr5 23777788 23777878 -128759381 + ORR1E LTR MaLR 4 91 -268 5 766 230 331 55 83 chr5 23778101 23778282 -128758977 - ORR1E LTR MaLR -164 195 20 5 766 265 244 17 81 chr5 23779333 23779507 -128757752 + (TCTCTG)n Simple_repeat Simple_repeat 2 164 0 5 766 341 316 60 66 chr5 23780140 23780306 -128756953 - MIRc SINE MIR -95 167 3 5 766 270 342 0 0 chr5 23780780 23780859 -128756400 + ID4_ SINE ID 2 80 -3 5 766 483 245 21 0 chr5 23781141 23781235 -128756024 + B3A SINE B2 3 98 -100 5 766 1928 213 89 19 chr5 23781242 23781477 -128755782 + RLTR12B LTR ERVK 8 248 -280 5 766 183 42 0 0 chr5 23781477 23781501 -128755758 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 766 1928 213 89 19 chr5 23781501 23781749 -128755510 + RLTR12B LTR ERVK 249 525 -3 5 766 21 0 0 0 chr5 23781750 23781771 -128755488 + AT_rich Low_complexity Low_complexity 1 21 0 5 766 651 179 16 0 chr5 23781781 23781904 -128755355 + B3 SINE B2 90 214 -2 5 766 819 208 7 7 chr5 23781919 23782064 -128755195 + B3 SINE B2 44 188 -28 5 766 243 0 0 0 chr5 23782065 23782092 -128755167 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 766 959 117 0 7 chr5 23782232 23782370 -128754889 + B1_Mus2 SINE Alu 11 147 0 5 766 259 309 44 0 chr5 23782568 23782636 -128754623 + B4A SINE B4 86 156 -136 5 766 418 295 27 0 chr5 23783110 23783222 -128754037 + PB1D10 SINE Alu 1 115 -2 5 766 338 194 96 61 chr5 23783847 23783962 -128753297 + MLT1A1 LTR MaLR 287 405 -3 5 766 5153 126 47 68 chr5 23784989 23785897 -128751362 + RMER19B LTR ERVK 2 890 -12 5 766 616 347 33 66 chr5 23786286 23786678 -128750581 + LTR83 LTR ERVL 47 425 -355 5 766 663 243 19 143 chr5 23786974 23787070 -128750189 + ID SINE ID 1 89 -135 5 766 561 30 0 0 chr5 23787070 23787137 -128750122 + (CATGC)n Simple_repeat Simple_repeat 3 69 0 5 766 663 243 19 143 chr5 23787137 23787256 -128750003 + ID_B1 SINE B4 90 189 -35 5 766 382 293 42 33 chr5 23787239 23787359 -128749900 + ID_B1 SINE B4 56 176 -48 5 766 511 257 9 0 chr5 23787271 23787376 -128749883 + PB1D10 SINE Alu 7 112 -5 5 766 447 231 65 49 chr5 23788311 23788434 -128748825 - B1_Mur2 SINE Alu -22 127 3 5 766 614 300 13 26 chr5 23790818 23790972 -128746287 + RSINE1 SINE B4 12 163 -2 5 766 559 217 9 0 chr5 23791663 23791769 -128745490 + PB1D10 SINE Alu 1 107 -10 5 766 240 279 19 0 chr5 23791842 23791946 -128745313 + L1M7 LINE L1 882 987 -5231 5 766 308 266 135 21 chr5 23792171 23792267 -128744992 - B1F SINE Alu -34 114 8 5 766 382 289 81 14 chr5 23792452 23792663 -128744596 - L1MC3 LINE L1 0 7995 7771 5 766 644 127 5 35 chr5 23792829 23793269 -128743990 + (TG)n Simple_repeat Simple_repeat 1 426 0 5 766 868 209 27 38 chr5 23793269 23793453 -128743806 - B3A SINE B2 -16 182 1 5 766 256 272 20 0 chr5 23793504 23793584 -128743675 - L1MC3 LINE L1 -322 7673 7603 5 766 567 271 39 10 chr5 23793815 23794020 -128743239 - L1MC3 LINE L1 -722 7063 6853 5 766 206 118 0 0 chr5 23794020 23794054 -128743205 + (T)n Simple_repeat Simple_repeat 1 34 0 5 766 370 361 83 0 chr5 23794623 23794853 -128742406 + MLT1K LTR MaLR 339 587 -8 5 766 1940 197 31 0 chr5 23795255 23795610 -128741649 - ORR1D1 LTR MaLR 0 374 9 5 766 1019 264 32 73 chr5 23795633 23795879 -128741380 + RMER5 LTR ERV1 112 359 -175 5 766 1085 91 14 0 chr5 23795879 23796022 -128741237 + B1_Mus2 SINE Alu 1 145 -2 5 766 1019 264 32 73 chr5 23796022 23796147 -128741112 + RMER5 LTR ERV1 360 468 -66 5 766 226 275 50 99 chr5 23796931 23797032 -128740227 + B4A SINE B4 72 167 -125 5 766 360 202 39 48 chr5 23796969 23797073 -128740186 + PB1D10 SINE Alu 15 117 0 5 766 208 175 35 17 chr5 23797092 23797150 -128740109 + GA-rich Low_complexity Low_complexity 1 59 0 5 766 318 321 66 37 chr5 23797605 23797741 -128739518 + ID_B1 SINE B4 2 141 -83 5 766 935 249 84 9 chr5 23798527 23798871 -128738388 + L1M2 LINE L1 4958 5327 -816 5 766 435 308 6 25 chr5 23799111 23799271 -128737988 + RSINE1 SINE B4 3 159 -6 5 766 577 169 14 0 chr5 23799297 23799407 -128737852 + B3 SINE B2 4 116 -79 5 766 535 341 63 41 chr5 23799470 23799785 -128737474 + RLTR26 LTR ERVK 96 417 -225 5 766 512 175 125 0 chr5 23799944 23800064 -128737195 + B3 SINE B2 67 201 -15 5 766 730 31 10 10 chr5 23800064 23800162 -128737097 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 5 766 408 225 11 22 chr5 23800177 23800268 -128736991 + B4 SINE B4 111 200 -92 5 766 518 261 84 0 chr5 23800280 23800399 -128736860 + B3A SINE B2 1 129 -69 5 766 1932 208 57 29 chr5 23800397 23801051 -128736208 - RMER19B LTR ERVK -125 777 1 5 766 392 102 0 17 chr5 23801233 23801293 -128735966 - L1_Mus1 LINE L1 -745 5138 5080 5 766 7731 58 8 0 chr5 23801292 23802694 -128734565 + L1_Mus1 LINE L1 5154 6567 0 5 766 420 322 142 9 chr5 23803138 23803370 -128733889 + LTR16A LTR ERVL 26 288 -163 5 766 619 12 25 0 chr5 23803379 23803459 -128733800 + (TTCTC)n Simple_repeat Simple_repeat 1 82 0 5 766 326 302 78 68 chr5 23803591 23803783 -128733476 + L1MC LINE L1 5570 5763 -2119 5 766 479 216 115 19 chr5 23803922 23804026 -128733233 + ID_B1 SINE B4 109 222 -2 5 766 322 345 148 33 chr5 23804028 23804238 -128733021 + B4A SINE B4 2 235 -57 5 766 2168 162 36 0 chr5 23804326 23804689 -128732570 + ORR1C1 LTR MaLR 1 376 -2 5 766 507 299 129 0 chr5 23804929 23805076 -128732183 + B3A SINE B2 3 168 -30 5 766 351 0 0 0 chr5 23805548 23805587 -128731672 + (A)n Simple_repeat Simple_repeat 1 39 0 5 766 512 73 0 0 chr5 23805695 23805763 -128731496 + ORR1C2 LTR MaLR 315 382 -2 5 766 417 340 62 36 chr5 23805809 23806004 -128731255 - MER20 DNA MER1_type 0 219 20 5 766 729 0 0 0 chr5 23806018 23806099 -128731160 + (GA)n Simple_repeat Simple_repeat 2 82 0 5 766 358 226 11 97 chr5 23806337 23806430 -128730829 - MTE2a LTR MaLR -14 365 275 5 766 1697 145 106 108 chr5 23806430 23806502 -128730757 - ORR1C1 LTR MaLR 0 378 324 5 766 1226 36 0 0 chr5 23806502 23806642 -128730617 + B1_Mm SINE Alu 1 140 -7 5 766 1697 145 106 108 chr5 23806642 23806948 -128730311 - ORR1C1 LTR MaLR -55 323 1 5 766 358 296 128 90 chr5 23806948 23807099 -128730160 - MTE2a LTR MaLR -87 292 124 5 766 237 310 16 79 chr5 23807307 23807433 -128729826 + MIR SINE MIR 27 144 -64 6 766 637 244 8 0 chr5 23808223 23808350 -128728909 - MT2A LTR ERVL -314 219 92 6 766 247 309 0 0 chr5 23808344 23808399 -128728860 - MT2A LTR ERVL -401 132 78 6 766 2202 239 26 9 chr5 23808438 23809268 -128727991 + RMER1B Other Other 1 527 -503 6 766 426 314 138 25 chr5 23809446 23809642 -128727617 + B4 SINE B4 2 219 -73 6 766 2834 156 43 41 chr5 23809698 23810279 -128726980 + RMER1B Other Other 485 1066 0 6 766 540 138 11 22 chr5 23810291 23810380 -128726879 - MT2A LTR ERVL -445 88 1 6 766 1504 177 168 18 chr5 23810380 23810719 -128726540 - MTD LTR MaLR -24 395 6 6 766 561 282 0 0 chr5 23810726 23810836 -128726423 + RSINE1 SINE B4 35 144 -21 6 766 252 0 0 0 chr5 23810843 23810871 -128726388 + (TC)n Simple_repeat Simple_repeat 1 28 0 6 766 375 23 0 0 chr5 23810871 23810914 -128726345 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 766 786 244 103 5 chr5 23810964 23811158 -128726101 + ID_B1 SINE B4 7 219 -5 6 766 1199 7 0 7 chr5 23811746 23811887 -128725372 + (GGGAGA)n Simple_repeat Simple_repeat 3 142 0 6 766 587 311 128 80 chr5 23811923 23812259 -128725000 + ORR1E LTR MaLR 8 359 0 6 766 264 83 67 0 chr5 23812351 23812411 -128724848 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 6 766 483 275 148 23 chr5 23812420 23812521 -128724738 - L1MB3 LINE L1 -3 6180 6077 6 766 333 0 0 0 chr5 23812521 23812558 -128724701 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 766 483 275 148 23 chr5 23812558 23812761 -128724498 - L1MB3 LINE L1 -107 6076 5838 6 766 431 35 18 0 chr5 23812781 23812838 -128724421 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 766 1547 44 10 5 chr5 23812847 23813051 -128724208 - L1_Mus3 LINE L1 -2 6636 6432 6 766 299 330 99 10 chr5 23813081 23813182 -128724077 - ORR1E LTR MaLR -236 123 14 6 766 226 311 129 41 chr5 23814104 23814275 -128722984 + LTR85c LTR Gypsy? 601 786 -37 6 766 1148 69 0 14 chr5 23814892 23815039 -128722220 + B1_Mus2 SINE Alu 2 146 -1 6 766 1248 101 26 0 chr5 23815081 23815270 -128721989 + B2_Mm2 SINE B2 2 195 0 6 766 676 226 15 0 chr5 23815356 23815489 -128721770 + B1_Mus1 SINE Alu 5 139 -9 6 766 644 226 116 44 chr5 23815586 23815767 -128721492 + B3A SINE B2 5 198 0 6 766 602 203 185 25 chr5 23815778 23815923 -128721336 + ORR1D1 LTR MaLR 2 172 -202 6 766 1338 73 0 0 chr5 23815923 23816102 -128721157 + (TCC)n Simple_repeat Simple_repeat 2 180 0 6 766 602 203 185 25 chr5 23816102 23816113 -128721146 + ORR1D1 LTR MaLR 173 183 -191 6 766 468 0 0 0 chr5 23816113 23816165 -128721094 + (TTC)n Simple_repeat Simple_repeat 1 52 0 6 766 678 106 0 0 chr5 23816167 23816290 -128720969 + (TC)n Simple_repeat Simple_repeat 1 123 0 6 766 885 181 70 53 chr5 23816318 23816408 -128720851 + ORR1D1 LTR MaLR 185 275 -99 6 766 3320 130 193 21 chr5 23816408 23817035 -128720224 - RMER19A LTR ERVK 0 737 3 6 766 885 181 70 53 chr5 23817035 23817131 -128720128 + ORR1D1 LTR MaLR 276 374 0 6 766 527 288 68 34 chr5 23817742 23817949 -128719310 - MT2A LTR ERVL -28 573 279 6 766 413 86 17 0 chr5 23818044 23818102 -128719157 - RLTR14 LTR ERV1 -323 59 1 6 766 412 286 43 115 chr5 23818272 23818481 -128718778 - RLTR14-int LTR ERV1 -176 5141 4948 6 766 304 271 43 86 chr5 23818506 23818517 -128718742 + MT2B LTR ERVL 169 276 -321 6 766 582 196 10 0 chr5 23818517 23818619 -128718640 + B1_Mur2 SINE Alu 18 120 -29 6 766 929 259 49 27 chr5 23818629 23818958 -128718301 + Lx8 LINE L1 5501 5836 -11 6 766 1609 208 102 22 chr5 23819112 23819524 -128717735 + RMER4A LTR ERVK 17 461 -5 6 766 4350 134 20 27 chr5 23819527 23820294 -128716965 + MurERV4-int LTR ERVK 85 845 -4415 6 766 664 249 87 73 chr5 23820305 23820955 -128716304 - RMER17A2 LTR ERVK -9 899 311 6 766 1583 16 0 0 chr5 23820951 23821135 -128716124 + B2_Mm1a SINE B2 10 193 0 6 766 1147 244 27 45 chr5 23821121 23821456 -128715803 - RMER17A2 LTR ERVK -577 329 1 6 766 1902 143 24 3 chr5 23821473 23821802 -128715457 + MurERV4-int LTR ERVK 902 1237 -4023 6 766 517 211 17 17 chr5 23821802 23821918 -128715341 + RMER4B LTR ERVK 170 285 -300 6 766 2271 172 73 11 chr5 23821918 23822371 -128714888 + MurERV4-int LTR ERVK 1255 1735 -3525 6 766 1992 118 9 6 chr5 23822373 23822688 -128714571 + MurERV4-int LTR ERVK 4944 5259 -1 6 766 2109 141 94 46 chr5 23822688 23823178 -128714081 + RMER4B LTR ERVK 1 457 -9 6 766 333 295 89 0 chr5 23823283 23823395 -128713864 + B3 SINE B2 1 122 -94 6 766 1472 252 107 17 chr5 23823407 23823818 -128713441 + Lx6 LINE L1 6987 7434 -26 6 766 21 36 0 0 chr5 23823825 23823853 -128713406 + AT_rich Low_complexity Low_complexity 1 28 0 6 766 585 276 52 0 chr5 23823862 23823996 -128713263 + RSINE1 SINE B4 15 155 -10 6 766 264 216 0 0 chr5 23824029 23824080 -128713179 + Lx8 LINE L1 6206 6256 -1217 6 766 736 175 28 35 chr5 23824097 23824239 -128713020 - B3 SINE B2 0 216 76 6 766 183 42 0 0 chr5 23825252 23825276 -128711983 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 766 223 0 0 96 chr5 23829691 23829743 -128707516 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 6 766 333 0 0 0 chr5 23832917 23832954 -128704305 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 766 423 0 0 0 chr5 23832954 23833000 -128704259 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 766 290 304 88 18 chr5 23839269 23839383 -128697876 + MIR SINE MIR 97 218 -44 6 766 287 295 13 0 chr5 23839509 23839587 -128697672 + Charlie10 DNA MER1_type 72 150 -2672 6 766 241 371 19 9 chr5 23843014 23843120 -128694139 + MIRc SINE MIR 61 167 -101 6 766 492 268 40 60 chr5 23843970 23844121 -128693138 + RSINE1 SINE B4 11 158 -7 6 766 372 127 45 9 chr5 23844159 23844270 -128692989 + (TG)n Simple_repeat Simple_repeat 1 115 0 6 766 423 320 33 7 chr5 23845452 23845603 -128691656 + RSINE1 SINE B4 3 157 -8 6 766 427 291 40 68 chr5 23845712 23845889 -128691370 - B4A SINE B4 -118 174 3 6 766 304 271 87 1 chr5 23846090 23846196 -128691063 + PB1D10 SINE Alu 1 116 -1 6 766 400 252 86 70 chr5 23846233 23846361 -128690898 + B1F SINE Alu 19 148 -1 6 766 343 336 64 26 chr5 23846476 23846669 -128690590 + L1M5 LINE L1 4780 4981 -1165 6 766 756 333 112 33 chr5 23846896 23847663 -128689596 + L1ME5 LINE L1 5257 6084 -110 6 766 288 336 65 26 chr5 23848392 23848545 -128688714 - MIRc SINE MIR -109 159 1 6 766 285 29 0 0 chr5 23851010 23851044 -128686215 + (CAGAGA)n Simple_repeat Simple_repeat 6 39 0 6 766 407 292 0 58 chr5 23851652 23851772 -128685487 + PB1 SINE Alu 12 124 -3 6 766 379 295 26 18 chr5 23851784 23851898 -128685361 + PB1D9 SINE Alu 4 118 -2 6 766 567 277 6 37 chr5 23851938 23852099 -128685160 + RSINE1 SINE B4 6 161 -4 6 766 365 277 73 55 chr5 23852764 23852928 -128684331 + RLTR23 LTR ERV1 222 388 -42 6 766 332 338 15 8 chr5 23854898 23855032 -128682227 - MIRb SINE MIR -89 179 45 6 767 478 294 84 6 chr5 23855828 23856006 -128681253 - MIR3 SINE MIR -14 194 3 6 767 24 67 0 0 chr5 23857112 23857157 -128680102 + GC_rich Low_complexity Low_complexity 1 45 0 6 767 23 68 0 0 chr5 23857516 23857560 -128679699 + GC_rich Low_complexity Low_complexity 1 44 0 6 767 22 35 0 0 chr5 23858269 23858298 -128678961 + GC_rich Low_complexity Low_complexity 1 29 0 6 767 396 0 0 0 chr5 23859476 23859520 -128677739 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 767 347 351 50 94 chr5 23860546 23860895 -128676364 - L2b LINE L2 -3 3372 3063 6 767 650 295 101 43 chr5 23861161 23861335 -128675924 - MLT1G3 LTR MaLR -226 369 198 6 767 1235 106 67 0 chr5 23861335 23861515 -128675744 - B2_Mm2 SINE B2 -3 192 1 6 767 650 295 101 43 chr5 23861515 23861687 -128675572 - MLT1G3 LTR MaLR -398 197 3 6 767 1183 48 14 7 chr5 23861795 23861941 -128675318 + B1_Mus2 SINE Alu 1 147 0 6 767 1390 104 16 0 chr5 23862250 23862442 -128674817 + B2_Mm2 SINE B2 1 195 0 6 767 278 182 103 11 chr5 23863127 23863218 -128674041 - PB1D7 SINE Alu 0 120 13 6 767 623 285 33 0 chr5 23864283 23864434 -128672825 - RSINE1 SINE B4 -7 158 3 6 767 237 170 0 21 chr5 23865005 23865053 -128672206 + MTEb LTR MaLR 275 321 -58 6 767 443 210 16 0 chr5 23865718 23865842 -128671417 + (CATA)n Simple_repeat Simple_repeat 1 126 0 6 767 316 248 89 178 chr5 23865907 23865975 -128671284 + B1F2 SINE Alu 1 63 -86 6 767 1077 44 81 0 chr5 23865975 23866111 -128671148 + B1_Mus1 SINE Alu 1 147 -1 6 767 316 248 89 178 chr5 23866111 23866199 -128671060 + B1F2 SINE Alu 64 143 -6 6 767 819 214 119 10 chr5 23868149 23868343 -128668916 + B3 SINE B2 2 216 0 6 767 278 333 65 45 chr5 23868412 23868613 -128668646 - LTR16B1 LTR ERVL 0 480 276 6 767 180 0 0 0 chr5 23869717 23869737 -128667522 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 6 767 275 349 79 28 chr5 23870998 23871157 -128666102 + MIRb SINE MIR 12 179 -89 6 767 382 219 104 0 chr5 23871740 23871836 -128665423 + ID_B1 SINE B4 90 195 -29 6 767 273 309 100 0 chr5 23871836 23871850 -128665409 + B1_Mm SINE Alu 9 129 -18 6 767 194 0 39 0 chr5 23872022 23872048 -128665211 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 767 216 0 0 0 chr5 23874343 23874367 -128662892 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 6 767 1225 217 117 11 chr5 23874953 23875303 -128661956 - MTD LTR MaLR -14 405 3 6 767 927 70 0 0 chr5 23876206 23876334 -128660925 + (TG)n Simple_repeat Simple_repeat 2 129 0 6 767 416 226 24 0 chr5 23876335 23876419 -128660840 - PB1D7 SINE Alu -34 86 1 6 767 522 0 0 0 chr5 23876968 23877026 -128660233 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 767 601 263 51 0 chr5 23878192 23878329 -128658930 + ID_B1 SINE B4 81 224 0 6 767 261 98 0 0 chr5 23878612 23878653 -128658606 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 767 296 341 35 28 chr5 23879138 23879164 -128658095 - YREP_Mm Unknown Unknown -1461 351 326 6 767 189 0 0 0 chr5 23879164 23879185 -128658074 + (CAA)n Simple_repeat Simple_repeat 1 21 0 6 767 296 341 35 28 chr5 23879185 23879300 -128657959 - YREP_Mm Unknown Unknown -1487 325 210 6 767 468 296 76 0 chr5 23879194 23879326 -128657933 + ID_B1 SINE B4 81 222 -2 6 767 282 221 169 0 chr5 23879325 23879402 -128657857 + PB1D9 SINE Alu 19 108 -12 7 767 180 0 0 0 chr5 23879402 23879422 -128657837 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 7 767 504 297 0 0 chr5 23879438 23879556 -128657703 + RSINE1 SINE B4 8 125 -40 7 767 207 0 0 0 chr5 23879557 23879580 -128657679 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 767 459 0 0 0 chr5 23879580 23879630 -128657629 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 767 779 254 104 11 chr5 23880083 23880424 -128656835 - L1ME2z LINE L1 -2094 5948 5574 7 767 418 222 144 6 chr5 23880502 23880683 -128656576 + L1ME3A LINE L1 5640 5845 -328 7 767 617 298 17 12 chr5 23880930 23881103 -128656156 + ID_B1 SINE B4 30 203 -21 7 767 612 27 0 0 chr5 23881104 23881178 -128656081 + (TC)n Simple_repeat Simple_repeat 1 74 0 7 767 477 0 0 0 chr5 23881472 23881525 -128655734 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 767 333 331 16 16 chr5 23881534 23881660 -128655599 - RSINE1 SINE B4 -36 129 4 7 767 440 204 307 9 chr5 23881672 23881786 -128655473 - B1F2 SINE Alu 0 149 2 7 767 1176 193 40 0 chr5 23881968 23882170 -128655089 + B3 SINE B2 1 210 -6 7 767 189 0 0 0 chr5 23882250 23882271 -128654988 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 7 767 187 31 62 0 chr5 23882340 23882372 -128654887 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 7 767 1202 55 7 0 chr5 23882372 23882517 -128654742 - B1_Mm SINE Alu 0 147 2 7 767 265 328 0 0 chr5 23882733 23882797 -128654462 + Tigger5 DNA MER2_type 2340 2403 -3 7 767 357 93 0 0 chr5 23882843 23882897 -128654362 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 767 971 209 78 0 chr5 23884878 23885084 -128652175 + ID_B1 SINE B4 2 223 -1 7 767 486 0 0 0 chr5 23887664 23887718 -128649541 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 767 387 60 0 0 chr5 23887991 23888041 -128649218 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 767 877 118 26 65 chr5 23888044 23888198 -128649061 + B1_Mus1 SINE Alu 1 148 0 7 767 1200 62 0 0 chr5 23894832 23894977 -128642282 + B1_Mus2 SINE Alu 3 147 0 7 767 253 347 173 17 chr5 23895818 23895997 -128641262 + Charlie1 DNA MER1_type 35 241 -2540 7 767 391 247 0 0 chr5 23895997 23896078 -128641181 + ID4 SINE ID 3 83 0 7 767 666 239 206 0 chr5 23896584 23896764 -128640495 + ID_B1 SINE B4 2 218 -6 7 767 263 271 45 34 chr5 23898235 23898323 -128638936 + PB1D10 SINE Alu 29 117 0 7 767 446 244 113 0 chr5 23899473 23899588 -128637671 + B1F SINE Alu 6 133 -16 7 767 309 26 0 0 chr5 23899861 23899899 -128637360 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 767 375 292 48 48 chr5 23900793 23900919 -128636340 + RSINE1 SINE B4 3 128 -37 7 767 336 183 42 14 chr5 23900990 23901062 -128636197 + B1_Mur4 SINE Alu 58 131 -19 7 767 252 264 14 0 chr5 23901079 23901149 -128636110 + B1F SINE Alu 49 119 -1 7 767 210 260 0 0 chr5 23901256 23901306 -128635953 + PB1D10 SINE Alu 59 108 -9 7 767 524 209 23 144 chr5 23901331 23901504 -128635755 + RSINE1 SINE B4 14 165 0 7 767 29 28 0 0 chr5 23901504 23901540 -128635719 + AT_rich Low_complexity Low_complexity 1 36 0 7 767 1039 136 198 0 chr5 23901791 23901968 -128635291 - B3 SINE B2 -3 213 2 7 767 1327 110 15 35 chr5 23901992 23902190 -128635069 - B2_Mm2 SINE B2 0 195 2 7 767 1627 42 5 0 chr5 23902203 23902394 -128634865 - B2_Mm1a SINE B2 0 193 2 7 767 808 151 14 0 chr5 23902397 23902536 -128634723 - B1_Mur1 SINE Alu 0 149 9 7 767 295 274 41 111 chr5 23902436 23902608 -128634651 - MT2B LTR ERVL -338 263 104 7 767 1684 26 5 0 chr5 23903245 23903437 -128633822 + B2_Mm1a SINE B2 1 193 0 7 767 631 264 48 58 chr5 23903553 23903742 -128633517 - B3A SINE B2 -11 187 1 7 767 481 248 0 42 chr5 23903744 23903862 -128633397 - PB1D10 SINE Alu 0 117 5 7 767 515 183 5 62 chr5 23904390 23904582 -128632677 + RMER17C LTR ERVK 97 277 -133 7 767 1435 88 16 0 chr5 23905226 23905418 -128631841 + B2_Mm2 SINE B2 1 195 0 7 767 476 216 1 5 chr5 23905442 23905546 -128631713 + PB1 SINE Alu 5 101 -48 7 767 180 0 0 0 chr5 23905546 23905566 -128631693 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 7 767 320 307 14 62 chr5 23905566 23905607 -128631652 + B1F1 SINE Alu 102 143 -6 7 767 758 211 92 27 chr5 23908434 23908619 -128628640 - B3A SINE B2 0 198 2 7 767 451 283 65 7 chr5 23908619 23908758 -128628501 - B1F SINE Alu -1 148 2 7 767 191 241 18 53 chr5 23909561 23909618 -128627641 - L2 LINE L2 -1394 2025 1971 7 767 22 35 0 0 chr5 23909705 23909734 -128627525 + AT_rich Low_complexity Low_complexity 1 29 0 7 767 189 298 0 17 chr5 23912108 23912166 -128625093 - L2b LINE L2 -10 3365 3309 7 767 570 209 9 9 chr5 23915618 23915734 -128621525 + PB1D10 SINE Alu 2 117 0 7 767 338 305 0 12 chr5 23915762 23915845 -128621414 + ID4_ SINE ID 1 82 -1 7 767 1279 34 0 0 chr5 23916024 23916170 -128621089 + B1_Mus2 SINE Alu 2 147 0 7 767 290 242 32 0 chr5 23916322 23916384 -128620875 + ID_B1 SINE B4 152 215 -9 7 767 301 275 17 92 chr5 23918224 23918344 -128618915 - RLTR25A LTR ERVK -471 632 522 7 767 956 48 0 0 chr5 23918263 23918388 -128618871 - B1_Mus2 SINE Alu -21 126 2 7 767 620 226 65 14 chr5 23920646 23920785 -128616474 + B1_Mur2 SINE Alu 4 149 0 7 767 225 308 46 46 chr5 23920935 23921044 -128616215 - YREP_Mm Unknown Unknown -1487 325 217 7 767 405 308 17 0 chr5 23920952 23921069 -128616190 + ID_B1 SINE B4 89 207 -17 7 767 266 73 24 0 chr5 23921440 23921481 -128615778 + (AGGGGG)n Simple_repeat Simple_repeat 4 45 0 7 767 366 276 171 0 chr5 23923939 23924044 -128613215 - ID_B1 SINE B4 -3 221 99 7 767 314 259 110 17 chr5 23924068 23924186 -128613073 - B1F SINE Alu 0 149 21 7 767 285 109 0 0 chr5 23926948 23926994 -128610265 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 767 844 184 0 7 chr5 23927031 23927179 -128610080 - B1_Mus2 SINE Alu 0 147 1 7 767 245 111 0 0 chr5 23927181 23927217 -128610042 - B3A SINE B2 -160 38 3 7 767 180 316 71 40 chr5 23927429 23927528 -128609731 - L4 LINE RTE -550 1479 1378 7 767 611 242 20 119 chr5 23927548 23927750 -128609509 - B3A SINE B2 0 216 35 7 767 409 297 0 35 chr5 23927774 23927889 -128609370 - PB1D10 SINE Alu 0 117 7 7 767 237 380 0 42 chr5 23927800 23927918 -128609341 - ID_B1 SINE B4 -48 176 64 7 767 27 49 0 0 chr5 23931040 23931081 -128606178 + GC_rich Low_complexity Low_complexity 1 41 0 7 767 22 0 0 0 chr5 23931139 23931161 -128606098 + GC_rich Low_complexity Low_complexity 1 22 0 7 767 393 22 0 0 chr5 23933764 23933810 -128603449 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 767 190 208 33 111 chr5 23936361 23936453 -128600806 - L2b LINE L2 -194 3193 3108 7 767 507 222 22 73 chr5 23938147 23938283 -128598976 - B1F SINE Alu -12 137 9 7 767 459 273 21 35 chr5 23938901 23939045 -128598214 - ID_B1 SINE B4 -2 222 81 7 767 447 294 144 19 chr5 23939188 23939396 -128597863 - Tigger15a DNA TcMar -455 260 27 7 767 224 278 64 9 chr5 23939536 23939645 -128597614 + L3 LINE CR1 4223 4337 -152 7 767 273 240 257 9 chr5 23942161 23942266 -128594993 - RSINE1 SINE B4 -33 132 2 7 767 1216 74 50 22 chr5 23942579 23942759 -128594500 - B2_Mm2 SINE B2 -9 186 2 7 767 453 256 0 46 chr5 23943326 23943457 -128593802 + BC1_Mm scRNA scRNA 1 125 -27 7 767 1137 75 14 0 chr5 23943467 23943613 -128593646 + B1_Mus1 SINE Alu 1 148 0 7 767 285 51 0 0 chr5 23943643 23943682 -128593577 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 767 676 182 123 43 chr5 23943753 23943891 -128593368 + B1_Mur1 SINE Alu 1 149 0 7 767 614 283 24 30 chr5 23943906 23944070 -128593189 + RSINE1 SINE B4 3 165 0 7 767 209 219 0 0 chr5 23944072 23944113 -128593146 + (CATA)n Simple_repeat Simple_repeat 2 42 0 7 767 465 190 69 10 chr5 23944303 23944404 -128592855 - U6 snRNA snRNA 0 107 1 7 767 669 191 68 15 chr5 23948277 23948410 -128588849 - B1F2 SINE Alu -9 140 1 7 767 312 343 88 28 chr5 23950305 23950521 -128586738 - MIRc SINE MIR -8 260 32 7 767 424 318 20 13 chr5 23950546 23950696 -128586563 + MIRb SINE MIR 5 155 -113 7 767 228 167 21 0 chr5 23951841 23951889 -128585370 + (CAG)n Simple_repeat Simple_repeat 3 51 0 7 767 188 293 119 89 chr5 23954134 23954235 -128583024 + MIRb SINE MIR 22 125 -143 7 767 367 297 40 0 chr5 23954381 23954482 -128582777 + PB1D10 SINE Alu 2 106 -11 7 767 352 375 9 0 chr5 23954660 23954772 -128582487 - B4A SINE B4 -152 140 28 7 767 615 262 84 59 chr5 23954801 23955004 -128582255 - B3 SINE B2 -8 208 1 7 767 237 310 139 2 chr5 23955167 23955323 -128581936 - L2c LINE L2 0 3375 3200 7 767 834 174 35 0 chr5 23955441 23955585 -128581674 - B1_Mur4 SINE Alu 0 150 2 7 767 742 254 66 45 chr5 23955898 23956096 -128581163 + B3 SINE B2 2 203 -13 7 767 452 191 71 26 chr5 23956424 23956537 -128580722 - PB1D9 SINE Alu 0 120 3 7 767 297 208 29 68 chr5 23956447 23956550 -128580709 - MT2B LTR ERVL -351 250 152 8 767 449 286 45 0 chr5 23956644 23956777 -128580482 - ID_B1 SINE B4 -2 222 84 8 767 251 245 13 77 chr5 23957605 23957760 -128579499 + G-rich Low_complexity Low_complexity 2 146 0 8 767 21 57 0 0 chr5 23957830 23957865 -128579394 + GC_rich Low_complexity Low_complexity 1 35 0 8 767 209 33 33 0 chr5 23957949 23957979 -128579280 + (CCG)n Simple_repeat Simple_repeat 2 32 0 8 767 225 83 0 0 chr5 23958089 23958125 -128579134 + (CGG)n Simple_repeat Simple_repeat 1 36 0 8 767 23 54 0 0 chr5 23958131 23958168 -128579091 + GC_rich Low_complexity Low_complexity 1 37 0 8 767 426 272 0 0 chr5 23958211 23958325 -128578934 + RMER1B Other Other 601 714 -352 8 767 510 125 0 0 chr5 23960027 23960107 -128577152 + (GGGA)n Simple_repeat Simple_repeat 2 81 0 8 767 1402 276 109 6 chr5 23962779 23963283 -128573976 - Lx7 LINE L1 -282 7414 6859 8 767 6197 88 20 3 chr5 23964121 23964141 -128573118 + Lx LINE L1 5795 5814 -840 8 767 429 152 616 8 chr5 23964141 23964274 -128572985 + B3 SINE B2 2 215 -1 8 767 6197 88 20 3 chr5 23964274 23965099 -128572160 + Lx LINE L1 5815 6653 -1 8 767 1148 88 0 0 chr5 23965133 23965280 -128571979 - B1_Mus1 SINE Alu 0 148 2 8 767 481 189 5 0 chr5 23965303 23965380 -128571879 + B1_Mur2 SINE Alu 8 87 -62 8 767 382 277 29 7 chr5 23965380 23965518 -128571741 + RLTR15 LTR ERVK 1 141 -218 8 767 259 226 32 16 chr5 23965596 23965659 -128571600 + B1_Mur1 SINE Alu 85 148 -1 8 767 393 240 124 9 chr5 23965677 23965782 -128571477 + B3A SINE B2 2 118 -77 8 767 425 253 183 12 chr5 23965849 23966013 -128571246 - MTD LTR MaLR -41 378 187 8 767 614 194 108 0 chr5 23966038 23966167 -128571092 - B1_Mur3 SINE Alu 0 149 7 8 767 689 183 151 40 chr5 23966206 23966405 -128570854 - MTD LTR MaLR -198 221 1 8 767 813 314 29 4 chr5 23966676 23966919 -128570340 - B4A SINE B4 0 292 44 8 767 399 235 60 9 chr5 23966922 23967038 -128570221 - ID_B1 SINE B4 -5 219 98 8 767 528 212 307 13 chr5 23967080 23967233 -128570026 - B3 SINE B2 -16 200 3 8 767 200 160 40 0 chr5 23967970 23967989 -128569270 + A-rich Low_complexity Low_complexity 3 21 0 8 767 1225 54 7 0 chr5 23967989 23968136 -128569123 + B1_Mus1 SINE Alu 1 148 0 8 767 200 160 40 0 chr5 23968136 23968166 -128569093 + A-rich Low_complexity Low_complexity 22 53 0 8 767 1356 81 38 0 chr5 23969000 23969186 -128568073 + B2_Mm2 SINE B2 2 194 -1 8 767 247 276 101 109 chr5 23969227 23969365 -128567894 + RSINE1 SINE B4 27 163 -2 8 767 407 289 65 81 chr5 23969406 23969530 -128567729 + RSINE1 SINE B4 42 163 -2 8 767 230 325 71 48 chr5 23969610 23969736 -128567523 + MIR SINE MIR 80 208 -54 8 767 562 277 15 0 chr5 23970070 23970200 -128567059 - ID_B1 SINE B4 -91 133 2 8 767 1013 212 261 23 chr5 23970244 23970543 -128566716 - ORR1D2 LTR MaLR 0 370 1 8 767 758 165 37 8 chr5 23971388 23971522 -128565737 - B1_Mus1 SINE Alu 0 148 11 8 767 545 312 31 36 chr5 23971389 23971582 -128565677 - ID_B1 SINE B4 0 224 33 8 767 192 291 18 0 chr5 23972982 23973037 -128564222 - MIR SINE MIR -108 154 99 8 767 319 306 73 93 chr5 23973689 23973840 -128563419 - ID_B1 SINE B4 -52 172 25 8 767 215 176 0 105 chr5 23973859 23973916 -128563343 - B1_Mur1 SINE Alu -7 142 92 8 767 240 235 0 4 chr5 23973987 23974044 -128563215 + ID4 SINE ID 13 67 -16 8 767 461 146 88 26 chr5 23974062 23974175 -128563084 - URR1B DNA MER1_type -53 172 53 8 767 219 36 0 0 chr5 23974224 23974252 -128563007 + (G)n Simple_repeat Simple_repeat 1 28 0 8 767 223 238 73 73 chr5 23974322 23974390 -128562869 - B1F SINE Alu -81 68 1 8 767 402 74 0 0 chr5 23974558 23974612 -128562647 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 767 242 358 17 52 chr5 23974612 23974727 -128562532 + MIRc SINE MIR 34 144 -124 8 767 306 253 96 175 chr5 23974832 23975009 -128562250 - MLT1C LTR MaLR -5 462 223 8 767 609 236 228 11 chr5 23975013 23975197 -128562062 - ID_B1 SINE B4 0 224 1 8 767 180 275 145 0 chr5 23975587 23975656 -128561603 - MIRc SINE MIR -115 153 75 8 767 1142 273 88 0 chr5 23975662 23975959 -128561300 - MTEa LTR MaLR -3 376 54 8 767 652 214 214 0 chr5 23977497 23977675 -128559584 - MTC LTR MaLR -8 413 196 8 767 1083 217 187 41 chr5 23977675 23978071 -128559188 - Lx6 LINE L1 -8 7452 7013 8 767 1418 89 5 10 chr5 23978183 23978376 -128558883 - B2_Mm1a SINE B2 -1 192 1 8 767 542 271 66 0 chr5 23978432 23978554 -128558705 - B3 SINE B2 -86 130 1 8 767 369 58 0 0 chr5 23978870 23978922 -128558337 + (CCCCAG)n Simple_repeat Simple_repeat 1 52 0 8 767 180 0 0 0 chr5 23979408 23979428 -128557831 + (T)n Simple_repeat Simple_repeat 1 20 0 8 767 186 294 20 0 chr5 23979590 23979641 -128557618 - MIRm SINE MIR -123 153 102 8 767 25 51 0 0 chr5 23980043 23980082 -128557177 + GC_rich Low_complexity Low_complexity 1 39 0 8 767 25 0 0 0 chr5 23980863 23980888 -128556371 + GC_rich Low_complexity Low_complexity 1 25 0 8 767 189 323 16 0 chr5 23983094 23983156 -128554103 + L2 LINE L2 131 193 -3226 8 767 292 190 209 23 chr5 23983247 23983333 -128553926 - PB1D10 SINE Alu -2 115 14 8 767 326 300 60 71 chr5 23985880 23986063 -128551196 - MIR3 SINE MIR -25 183 3 8 768 992 48 13 13 chr5 23987824 23987973 -128549286 + (TCC)n Simple_repeat Simple_repeat 1 149 0 8 768 360 309 57 7 chr5 23989533 23989673 -128547586 + B1F SINE Alu 2 148 -1 8 768 598 197 7 7 chr5 23989807 23989950 -128547309 + (CA)n Simple_repeat Simple_repeat 1 143 0 8 768 292 128 64 0 chr5 23990068 23990115 -128547144 + B3 SINE B2 6 55 -161 8 768 267 270 121 43 chr5 23992134 23992250 -128545009 - B1F1 SINE Alu -20 129 5 8 768 180 337 46 46 chr5 23992771 23992858 -128544401 - L2a LINE L2 -5 3421 3335 8 768 219 320 0 71 chr5 23992899 23992983 -128544276 + B4A SINE B4 68 145 -147 8 768 400 292 46 8 chr5 23992933 23993064 -128544195 + B1F SINE Alu 12 147 -2 8 768 201 74 0 0 chr5 23994313 23994340 -128542919 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 8 768 226 380 56 46 chr5 23994757 23994953 -128542306 - L4 LINE RTE -753 1276 1079 8 768 283 257 202 0 chr5 23998000 23998109 -128539150 + MIRb SINE MIR 22 152 -116 8 768 293 208 0 0 chr5 23998114 23998167 -128539092 + B1F SINE Alu 33 85 -64 8 768 483 258 32 192 chr5 23999423 23999610 -128537649 - B3A SINE B2 -1 215 59 8 768 288 0 0 0 chr5 24006741 24006773 -128530486 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 768 769 272 18 45 chr5 24011934 24012157 -128525102 + B4A SINE B4 2 218 -74 2 768 3745 152 75 42 chr5 24012159 24012826 -128524433 + RLTR17 LTR ERVK 1 689 -3 3 768 1140 86 0 0 chr5 24012826 24012988 -128524271 + (CA)n Simple_repeat Simple_repeat 2 163 0 4 768 1405 79 6 0 chr5 24013002 24013179 -128524080 + B2_Mm1t SINE B2 2 179 -14 5 768 227 243 27 13 chr5 24013282 24013357 -128523902 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 768 231 36 0 0 chr5 24013655 24013683 -128523576 + (CAGG)n Simple_repeat Simple_repeat 4 31 0 7 768 413 100 43 0 chr5 24014021 24014091 -128523168 + (TTTTC)n Simple_repeat Simple_repeat 2 74 0 8 768 1181 75 0 0 chr5 24014091 24014238 -128523021 - B1_Mus2 SINE Alu 0 147 1 9 768 1053 162 88 29 chr5 24014294 24014498 -128522761 + B3 SINE B2 1 216 0 1 768 1190 118 32 21 chr5 24014999 24015189 -128522070 + B2_Mm2 SINE B2 2 193 -2 1 768 269 342 34 17 chr5 24015194 24015313 -128521946 + L2a LINE L2 3291 3411 -15 1 768 1334 85 6 17 chr5 24015318 24015497 -128521762 + B2_Mm1t SINE B2 2 178 -15 1 768 325 100 324 18 chr5 24015546 24015657 -128521602 + B2_Mm2 SINE B2 47 191 -4 1 768 590 200 39 23 chr5 24016774 24016902 -128520357 + B3 SINE B2 82 211 -5 1 768 215 243 28 14 chr5 24016909 24016980 -128520279 + CT-rich Low_complexity Low_complexity 1 72 0 1 768 22 56 0 0 chr5 24017048 24017084 -128520175 + AT_rich Low_complexity Low_complexity 1 36 0 1 768 716 52 10 0 chr5 24017090 24017187 -128520072 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 1 768 543 282 24 0 chr5 24017211 24017335 -128519924 + B1_Mur1 SINE Alu 10 136 -13 1 768 1105 48 0 105 chr5 24017336 24017498 -128519761 - B1_Mm SINE Alu 0 147 3 2 768 872 62 0 0 chr5 24017610 24017723 -128519536 - B1_Mus1 SINE Alu -13 135 23 2 768 1446 70 32 0 chr5 24017747 24017933 -128519326 - B2_Mm2 SINE B2 0 195 4 2 768 1109 178 196 0 chr5 24018406 24018681 -128518578 + Lx9 LINE L1 7314 7642 -2 2 768 283 252 176 9 chr5 24018776 24018884 -128518375 + B1F SINE Alu 5 130 -19 2 768 1573 233 70 18 chr5 24019288 24019673 -128517586 + MTD LTR MaLR 1 405 -14 2 768 186 311 16 16 chr5 24019852 24019914 -128517345 - MIR SINE MIR -123 139 78 2 768 1168 218 0 5 chr5 24020045 24020257 -128517002 - B3 SINE B2 -4 212 2 2 768 234 218 68 114 chr5 24020530 24020544 -128516715 + ORR1A3-int LTR MaLR 1878 1891 -72 2 768 503 221 177 25 chr5 24020544 24020702 -128516557 + B3A SINE B2 2 183 -15 2 768 802 129 166 21 chr5 24020702 24020951 -128516308 + ORR1A3 LTR MaLR 1 212 -114 2 768 364 320 10 0 chr5 24021194 24021294 -128515965 + PB1D10 SINE Alu 5 105 -12 3 768 431 35 0 17 chr5 24021412 24021470 -128515789 + (TAA)n Simple_repeat Simple_repeat 2 58 0 3 768 538 230 253 0 chr5 24021582 24021752 -128515507 - B3 SINE B2 0 216 4 3 768 637 268 90 50 chr5 24021769 24021969 -128515290 - ID_B1 SINE B4 -15 209 2 3 768 1243 34 0 7 chr5 24022245 24022394 -128514865 + B1_Mus1 SINE Alu 1 148 0 3 768 550 315 39 6 chr5 24022688 24022723 -128514536 - B3 SINE B2 -30 186 150 3 768 180 0 0 0 chr5 24022723 24022743 -128514516 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 768 550 315 39 6 chr5 24022743 24022886 -128514373 - B3 SINE B2 -67 149 3 3 768 298 274 62 11 chr5 24022924 24023054 -128514205 + PB1D10 SINE Alu 1 148 -1 3 768 211 293 0 0 chr5 24023106 24023164 -128514095 - MIR3 SINE MIR -25 183 126 3 768 1438 161 9 0 chr5 24023815 24024038 -128513221 - URR1B DNA MER1_type 0 225 1 3 768 605 202 70 0 chr5 24024339 24024468 -128512791 - B1_Mur1 SINE Alu -10 139 2 4 768 281 89 0 22 chr5 24024499 24024545 -128512714 + (TCC)n Simple_repeat Simple_repeat 2 46 0 4 768 656 152 79 50 chr5 24024562 24024701 -128512558 + B1_Mus1 SINE Alu 6 148 0 4 768 180 0 0 0 chr5 24024705 24024725 -128512534 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 768 278 26 0 25 chr5 24024764 24024804 -128512455 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 768 1207 55 0 0 chr5 24024804 24024949 -128512310 - B1_Mus2 SINE Alu -2 145 1 4 768 233 273 76 0 chr5 24025079 24025145 -128512114 - Charlie4a DNA MER1_type -1 507 437 4 768 281 330 40 90 chr5 24025181 24025381 -128511878 + B3A SINE B2 9 198 0 4 768 22 0 0 0 chr5 24025381 24025403 -128511856 + AT_rich Low_complexity Low_complexity 1 22 0 4 768 294 322 53 68 chr5 24025428 24025618 -128511641 - Charlie4a DNA MER1_type -277 231 45 4 768 234 202 110 37 chr5 24025713 24025795 -128511464 + MT2B2 LTR ERVL 184 271 -313 4 768 414 191 94 21 chr5 24025724 24025820 -128511439 + B1_Mur1 SINE Alu 46 148 -1 5 768 468 200 0 0 chr5 24025826 24025931 -128511328 + (CA)n Simple_repeat Simple_repeat 2 106 0 5 768 434 285 15 44 chr5 24026274 24026410 -128510849 - RSINE1 SINE B4 -2 163 32 5 768 443 195 121 26 chr5 24026459 24026575 -128510684 + B1_Mur3 SINE Alu 8 134 -15 5 768 210 171 0 0 chr5 24026579 24026620 -128510639 + GA-rich Low_complexity Low_complexity 3 43 0 5 768 1030 99 12 0 chr5 24026622 24026784 -128510475 + (GGAGA)n Simple_repeat Simple_repeat 1 164 0 5 768 1082 113 0 13 chr5 24026792 24026944 -128510315 + B1_Mur4 SINE Alu 1 150 0 5 768 498 75 0 0 chr5 24026970 24027037 -128510222 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 5 768 377 245 0 31 chr5 24027064 24027161 -128510098 + ID_B1 SINE B4 129 222 -2 5 768 235 137 55 73 chr5 24027112 24027167 -128510092 + PB1D9 SINE Alu 67 120 0 5 768 236 171 0 0 chr5 24027169 24027210 -128510049 + B3A SINE B2 4 44 -154 6 768 373 261 48 55 chr5 24027354 24027500 -128509759 + B1F SINE Alu 5 149 0 6 768 618 287 64 35 chr5 24028465 24028747 -128508512 + MER33 DNA MER1_type 31 320 -4 6 768 255 189 0 0 chr5 24028791 24028844 -128508415 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 768 377 257 59 0 chr5 24029265 24029366 -128507893 - ID_B1 SINE B4 -1 223 117 6 768 260 266 195 31 chr5 24029366 24029388 -128507871 - B1F SINE Alu 0 144 1 6 768 390 42 0 0 chr5 24029929 24029977 -128507282 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 768 482 46 15 0 chr5 24029981 24030046 -128507213 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 768 23 68 0 0 chr5 24032231 24032275 -128504984 + GC_rich Low_complexity Low_complexity 1 44 0 6 768 236 193 0 17 chr5 24032387 24032445 -128504814 + (CCG)n Simple_repeat Simple_repeat 3 59 0 6 768 26 98 0 0 chr5 24032460 24032542 -128504717 + GC_rich Low_complexity Low_complexity 1 82 0 7 768 34 57 0 43 chr5 24032668 24032760 -128504499 + GC_rich Low_complexity Low_complexity 1 88 0 7 768 240 273 13 25 chr5 24033240 24033319 -128503940 + CT-rich Low_complexity Low_complexity 3 80 0 7 768 693 0 0 0 chr5 24033390 24033467 -128503792 + (TC)n Simple_repeat Simple_repeat 1 77 0 7 768 407 176 40 0 chr5 24034156 24034230 -128503029 + ID_B1 SINE B4 129 205 -19 7 768 255 136 119 0 chr5 24034201 24034260 -128502999 + B1F SINE Alu 67 132 -17 7 768 281 215 23 92 chr5 24035715 24035802 -128501457 - B1_Mur1 SINE Alu -15 134 54 7 768 252 0 0 0 chr5 24037247 24037275 -128499984 + (TCC)n Simple_repeat Simple_repeat 1 28 0 7 768 343 306 103 4 chr5 24038165 24038304 -128498955 - MIR3 SINE MIR -54 154 3 7 768 999 212 10 0 chr5 24038336 24038539 -128498720 + B3 SINE B2 12 216 0 7 768 654 157 31 8 chr5 24040212 24040340 -128496919 - B3 SINE B2 0 216 86 8 768 325 346 71 0 chr5 24040384 24040511 -128496748 + ID_B1 SINE B4 54 189 -35 8 768 2114 55 18 0 chr5 24041064 24041337 -128495922 + L1_Mus3 LINE L1 6360 6637 -1 8 768 848 255 75 0 chr5 24041383 24041571 -128495688 + B3 SINE B2 5 206 -10 8 768 320 267 167 27 chr5 24041873 24042023 -128495236 - MIR SINE MIR 0 262 92 8 768 234 0 0 0 chr5 24042049 24042075 -128495184 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 8 768 728 77 10 0 chr5 24042087 24042191 -128495068 - B1_Mus1 SINE Alu -37 111 7 8 768 447 181 23 108 chr5 24042095 24042225 -128495034 - MT2B LTR ERVL -344 257 139 8 768 303 256 19 53 chr5 24044106 24044219 -128493040 - B1F SINE Alu -10 117 9 8 768 225 0 0 0 chr5 24044256 24044281 -128492978 + (TC)n Simple_repeat Simple_repeat 2 26 0 8 768 387 0 0 0 chr5 24044281 24044323 -128492936 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 768 564 175 132 0 chr5 24044336 24044450 -128492809 - B3A SINE B2 -69 129 1 9 768 345 226 127 99 chr5 24044491 24044587 -128492672 + B3 SINE B2 70 163 -53 9 768 254 29 29 0 chr5 24044587 24044622 -128492637 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 768 345 226 127 99 chr5 24044622 24044667 -128492592 + B3 SINE B2 164 215 -1 9 768 318 206 32 0 chr5 24044888 24044951 -128492308 + B3 SINE B2 12 76 -140 9 768 413 271 41 116 chr5 24045092 24045238 -128492021 - ID_B1 SINE B4 -7 217 83 9 768 185 299 75 52 chr5 24046981 24047115 -128490144 - MIRc SINE MIR -121 147 11 9 768 1013 92 0 0 chr5 24047694 24047835 -128489424 - B2_Mm2 SINE B2 -27 168 28 9 768 1116 83 7 0 chr5 24047836 24047980 -128489279 - B1_Mm SINE Alu -1 146 2 9 768 224 163 20 0 chr5 24048166 24048215 -128489044 + A-rich Low_complexity Low_complexity 6 55 0 9 768 1150 256 84 7 chr5 24048231 24048541 -128488718 - MTE2b LTR MaLR -39 340 7 1 768 198 333 12 25 chr5 24048723 24048803 -128488456 - MIR3 SINE MIR -6 202 124 1 768 1290 34 0 0 chr5 24048805 24048952 -128488307 + B1_Mus2 SINE Alu 1 147 0 1 768 1207 62 0 0 chr5 24050351 24050496 -128486763 + B1_Mus2 SINE Alu 3 147 0 1 768 267 152 0 0 chr5 24050496 24050542 -128486717 + A-rich Low_complexity Low_complexity 1 46 0 1 768 1179 41 14 0 chr5 24053559 24053704 -128483555 - B1_Mus2 SINE Alu 0 147 1 1 768 459 0 0 0 chr5 24054879 24054930 -128482329 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 768 510 17 0 0 chr5 24054930 24054988 -128482271 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 768 279 190 0 0 chr5 24055470 24055528 -128481731 + CT-rich Low_complexity Low_complexity 3 60 0 1 768 222 317 10 29 chr5 24056049 24056153 -128481106 + (TGGA)n Simple_repeat Simple_repeat 3 104 0 1 768 650 206 15 0 chr5 24057986 24058117 -128479142 - B3 SINE B2 -83 133 1 1 768 427 263 153 0 chr5 24059892 24060029 -128477230 - MER5A1 DNA MER1_type -7 159 2 1 768 237 132 0 0 chr5 24060580 24060618 -128476641 + (GAA)n Simple_repeat Simple_repeat 2 39 0 1 768 1156 43 0 14 chr5 24061421 24061556 -128475703 + B1_Mus2 SINE Alu 1 135 -12 1 768 369 0 0 0 chr5 24061556 24061597 -128475662 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1 768 1151 245 50 66 chr5 24061635 24062009 -128475250 - ORR1D2 LTR MaLR -5 374 3 1 768 211 246 27 14 chr5 24062298 24062372 -128474887 + GA-rich Low_complexity Low_complexity 3 77 0 1 768 290 161 16 0 chr5 24062647 24062708 -128474551 - B1F2 SINE Alu -51 69 9 1 768 238 256 25 37 chr5 24062708 24062724 -128474535 - B4A SINE B4 -136 152 77 1 768 692 206 139 40 chr5 24062747 24062932 -128474327 + ID_B1 SINE B4 3 213 -11 1 768 814 204 14 7 chr5 24062932 24063080 -128474179 + B1_Mur4 SINE Alu 1 149 -1 1 768 692 206 139 40 chr5 24063080 24063096 -128474163 + ID_B1 SINE B4 214 224 0 1 768 1313 98 16 5 chr5 24063566 24063750 -128473509 - B2_Mm2 SINE B2 -9 186 1 1 768 1272 282 65 8 chr5 24064056 24064438 -128472821 + MTD LTR MaLR 16 419 0 1 768 509 277 50 25 chr5 24064780 24064939 -128472320 - RSINE1 SINE B4 0 165 3 1 768 254 204 0 0 chr5 24065211 24065265 -128471994 - L1_Mur2 LINE L1 -732 5145 5092 1 768 1200 41 7 7 chr5 24065290 24065437 -128471822 - B1_Mus1 SINE Alu -1 147 1 1 768 3444 90 0 0 chr5 24065468 24065956 -128471303 - L1_Mm LINE L1 -768 5115 4628 1 768 2410 67 0 3 chr5 24065956 24066257 -128471002 + L1_Mus1 LINE L1 6268 6567 0 1 768 487 222 10 0 chr5 24066257 24066356 -128470903 - B3 SINE B2 -111 105 6 1 768 352 312 99 0 chr5 24066363 24066555 -128470704 - L1ME2 LINE L1 -61 6103 5893 1 768 527 244 68 15 chr5 24066555 24066688 -128470571 + MTD LTR MaLR 105 244 -175 1 768 383 271 0 34 chr5 24066752 24066840 -128470419 + B3A SINE B2 29 113 -85 1 768 397 208 0 0 chr5 24066907 24066984 -128470275 - ID_B1 SINE B4 -4 220 144 1 768 293 239 32 64 chr5 24066984 24066999 -128470260 - B1F SINE Alu -3 144 56 1 768 1499 70 5 0 chr5 24067178 24067365 -128469894 + B2_Mm2 SINE B2 2 189 -6 1 768 301 270 14 0 chr5 24067484 24067558 -128469701 - ID4 SINE ID -4 79 5 1 768 427 274 56 9 chr5 24067569 24067676 -128469583 - PB1D10 SINE Alu -5 112 1 1 768 597 214 129 8 chr5 24067685 24067817 -128469442 - B1_Mus1 SINE Alu 0 148 1 1 768 487 289 134 0 chr5 24067917 24068059 -128469200 - B4A SINE B4 -67 225 65 1 768 374 250 0 35 chr5 24068100 24068187 -128469072 - B3A SINE B2 -80 118 35 1 768 1247 55 0 0 chr5 24068191 24068337 -128468922 + B1_Mm SINE Alu 2 147 0 1 768 207 0 0 0 chr5 24068341 24068364 -128468895 + (A)n Simple_repeat Simple_repeat 1 23 0 1 768 362 73 18 0 chr5 24068508 24068563 -128468696 + B1_Mus1 SINE Alu 1 56 -92 1 768 264 0 107 0 chr5 24068565 24068621 -128468638 + (GA)n Simple_repeat Simple_repeat 2 63 0 1 768 4273 27 16 2 chr5 24070222 24070708 -128466551 - MT2_Mm LTR ERVL 0 493 1 1 768 300 214 155 0 chr5 24073527 24073611 -128463648 + RSINE1 SINE B4 2 98 -67 1 768 1089 123 29 12 chr5 24075572 24075744 -128461515 + B2_Mm2 SINE B2 2 176 -19 1 768 805 185 158 0 chr5 24075882 24076066 -128461193 + B3 SINE B2 1 213 -3 1 768 482 225 8 24 chr5 24076377 24076500 -128460759 + B3A SINE B2 60 180 -18 1 768 372 59 0 0 chr5 24076622 24076673 -128460586 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 768 1111 95 0 0 chr5 24076753 24076900 -128460359 - B1_Mm SINE Alu 0 147 1 1 768 267 54 0 0 chr5 24078670 24078707 -128458552 + (CACTA)n Simple_repeat Simple_repeat 3 39 0 1 768 384 77 0 0 chr5 24080579 24080631 -128456628 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 768 297 0 0 0 chr5 24080631 24080664 -128456595 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 768 468 310 109 0 chr5 24080964 24081138 -128456121 + MTD LTR MaLR 18 210 -209 1 768 875 134 28 7 chr5 24081139 24081282 -128455977 + B1_Mm SINE Alu 2 147 0 1 768 893 73 71 28 chr5 24081323 24081464 -128455795 + B1_Mm SINE Alu 1 147 0 1 768 337 241 13 0 chr5 24081477 24081556 -128455703 + MTD LTR MaLR 326 405 -14 1 768 766 154 35 35 chr5 24081772 24081913 -128455346 + B1_Mur3 SINE Alu 1 141 -8 1 768 296 291 46 11 chr5 24082200 24082287 -128454972 - B1F1 SINE Alu -57 92 3 1 768 1484 63 0 0 chr5 24084281 24084456 -128452803 + B2_Mm2 SINE B2 2 176 -19 1 768 237 132 0 0 chr5 24084513 24084551 -128452708 + (A)n Simple_repeat Simple_repeat 1 38 0 1 768 25 0 0 0 chr5 24085265 24085290 -128451969 + AT_rich Low_complexity Low_complexity 1 25 0 1 768 647 283 151 33 chr5 24085510 24085755 -128451504 - B4A SINE B4 -14 278 5 1 768 733 143 127 0 chr5 24086234 24086360 -128450899 + B1_Mur4 SINE Alu 1 142 -8 1 768 585 105 0 0 chr5 24086363 24086449 -128450810 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 1 768 214 355 13 0 chr5 24086590 24086666 -128450593 - ID4_ SINE ID -2 81 5 1 768 748 248 94 0 chr5 24086765 24086967 -128450292 - ID_B1 SINE B4 -2 222 2 1 768 1357 76 48 5 chr5 24087019 24087205 -128450054 - B2_Mm2 SINE B2 -1 194 1 1 768 310 21 43 0 chr5 24087228 24087275 -128449984 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 768 599 268 28 42 chr5 24087725 24087939 -128449320 - L1MA4 LINE L1 -393 5907 5697 1 768 1639 126 33 63 chr5 24087940 24088241 -128449018 - ORR1B2-int LTR MaLR -1188 321 30 1 768 1305 103 5 5 chr5 24088241 24088426 -128448833 + B2_Mm2 SINE B2 2 186 -9 1 768 1639 126 33 63 chr5 24088426 24088455 -128448804 - ORR1B2-int LTR MaLR -1480 29 1 1 768 1032 168 170 108 chr5 24088455 24088506 -128448753 - ORR1B2 LTR MaLR 0 367 324 1 768 1296 113 11 0 chr5 24088506 24088692 -128448567 - B2_Mm1t SINE B2 -3 190 3 1 768 1032 168 170 108 chr5 24088692 24088981 -128448278 - ORR1B2 LTR MaLR -44 323 6 1 768 328 282 140 7 chr5 24088993 24089136 -128448123 - L1MA4 LINE L1 -602 5689 5528 1 768 1454 87 0 5 chr5 24089193 24089389 -128447870 - B2_Mm2 SINE B2 0 195 1 1 768 273 89 0 0 chr5 24089525 24089570 -128447689 + (A)n Simple_repeat Simple_repeat 1 45 0 1 768 1528 195 111 53 chr5 24089879 24090275 -128446984 + MTD LTR MaLR 1 419 0 1 768 969 275 114 0 chr5 24090483 24090763 -128446496 + MTE2b LTR MaLR 3 314 -65 1 768 244 326 181 30 chr5 24090829 24091028 -128446231 + RMER20B LTR ERVK 341 569 -58 1 768 485 240 0 0 chr5 24091148 24091248 -128446011 + PB1D7 SINE Alu 21 120 0 1 768 22 0 0 0 chr5 24091380 24091402 -128445857 + AT_rich Low_complexity Low_complexity 1 22 0 1 768 380 250 85 19 chr5 24091497 24091603 -128445656 + PB1D9 SINE Alu 1 113 -7 1 768 1125 85 0 0 chr5 24091612 24091753 -128445506 + B1_Mm SINE Alu 1 141 -6 1 768 558 29 0 0 chr5 24091754 24091822 -128445437 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 768 433 257 106 0 chr5 24092000 24092113 -128445146 - RSINE1 SINE B4 -35 130 6 1 768 186 43 0 0 chr5 24095792 24095815 -128441444 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 1 768 465 308 94 19 chr5 24100047 24100206 -128437053 + MIR SINE MIR 92 262 0 1 768 213 39 0 0 chr5 24103483 24103509 -128433750 + (A)n Simple_repeat Simple_repeat 1 26 0 1 768 405 301 23 0 chr5 24104947 24105080 -128432179 - MIRc SINE MIR -74 194 59 1 768 603 264 79 117 chr5 24105730 24105836 -128431423 + ID_B1 SINE B4 3 105 -119 1 768 1249 48 0 0 chr5 24105836 24105983 -128431276 - B1_Mus1 SINE Alu 0 148 2 1 768 603 264 79 117 chr5 24105983 24106090 -128431169 + ID_B1 SINE B4 106 208 -16 1 768 222 62 0 0 chr5 24106852 24106884 -128430375 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 768 186 167 0 0 chr5 24107696 24107732 -128429527 + CT-rich Low_complexity Low_complexity 2 37 0 1 768 271 45 0 43 chr5 24107851 24107898 -128429361 + (CCG)n Simple_repeat Simple_repeat 3 47 0 1 768 252 320 9 19 chr5 24110982 24111087 -128426172 + GA-rich Low_complexity Low_complexity 5 108 0 1 768 381 22 0 0 chr5 24111607 24111653 -128425606 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 768 258 308 45 15 chr5 24111691 24111823 -128425436 + MIR3 SINE MIR 67 202 -6 1 768 208 305 299 28 chr5 24113232 24113980 -128423279 + L2 LINE L2 1721 2671 -748 1 768 664 112 124 31 chr5 24114224 24114353 -128422906 + B1_Mur4 SINE Alu 9 149 -1 1 768 469 236 9 0 chr5 24114667 24114773 -128422486 + B1_Mur1 SINE Alu 43 149 0 1 768 268 341 98 30 chr5 24114783 24114916 -128422343 + RSINE1 SINE B4 11 152 -13 1 768 292 349 51 40 chr5 24115285 24115461 -128421798 - MIRc SINE MIR -2 266 89 2 768 795 299 21 0 chr5 24115662 24115903 -128421356 + B4A SINE B4 41 286 -6 2 768 189 0 0 0 chr5 24115995 24116016 -128421243 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 768 333 129 0 0 chr5 24116018 24116088 -128421171 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 768 1056 87 11 95 chr5 24116563 24116753 -128420506 + B2_Mm1t SINE B2 1 174 -19 2 768 640 299 64 25 chr5 24116788 24117069 -128420190 - B4 SINE B4 -3 289 9 2 769 517 255 61 14 chr5 24118689 24118836 -128418423 - ID_B1 SINE B4 0 224 71 2 769 401 262 39 0 chr5 24119680 24119783 -128417476 + ID_B1 SINE B4 117 223 -1 2 769 200 371 37 28 chr5 24122233 24122341 -128414918 - L3 LINE CR1 -827 3662 3554 2 769 220 205 0 0 chr5 24122455 24122494 -128414765 - PB1D10 SINE Alu -15 102 64 2 769 292 279 100 62 chr5 24122527 24122657 -128414602 - B1_Mur3 SINE Alu -14 135 1 2 769 24 0 0 0 chr5 24123020 24123044 -128414215 + AT_rich Low_complexity Low_complexity 1 24 0 2 769 324 296 0 0 chr5 24123044 24123125 -128414134 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 769 443 250 147 11 chr5 24123161 24123351 -128413908 - B4A SINE B4 -75 217 2 2 769 412 378 33 9 chr5 24123351 24123569 -128413690 + MER102a DNA MER1_type 53 260 -70 2 769 201 305 114 38 chr5 24123762 24123946 -128413313 + MIR SINE MIR 23 220 -42 2 769 448 209 114 0 chr5 24124156 24124261 -128412998 + ID_B1 SINE B4 99 215 -9 2 769 424 244 15 40 chr5 24124768 24124909 -128412350 - B1F SINE Alu -8 139 1 2 769 183 100 0 0 chr5 24125287 24125317 -128411942 + (GTTTG)n Simple_repeat Simple_repeat 5 34 0 2 769 1110 57 0 21 chr5 24125317 24125461 -128411798 - B1_Mus1 SINE Alu -7 141 1 2 769 368 278 156 62 chr5 24125463 24125655 -128411604 - B3 SINE B2 -5 211 2 2 769 189 0 0 0 chr5 24127393 24127414 -128409845 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 769 1182 34 0 0 chr5 24131136 24131283 -128405976 + B1_Mm SINE Alu 1 147 0 2 769 30 77 0 0 chr5 24131297 24131362 -128405897 + AT_rich Low_complexity Low_complexity 1 65 0 2 769 352 215 30 61 chr5 24131364 24131463 -128405796 - B3A SINE B2 -1 197 102 2 769 247 218 18 0 chr5 24131475 24131530 -128405729 - B3 SINE B2 -160 56 1 2 769 479 181 0 21 chr5 24131530 24131626 -128405633 - ID_B1 SINE B4 -7 217 124 2 769 1203 27 7 0 chr5 24132184 24132331 -128404928 + B1_Mus1 SINE Alu 1 148 0 2 769 216 0 0 93 chr5 24132334 24132377 -128404882 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 769 198 0 0 0 chr5 24132667 24132689 -128404570 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 2 769 240 111 0 0 chr5 24132694 24132730 -128404529 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 769 296 340 28 48 chr5 24132738 24132883 -128404376 - RSINE1 SINE B4 -10 155 14 2 769 1054 59 0 39 chr5 24132887 24133117 -128404142 + (TTCC)n Simple_repeat Simple_repeat 1 221 0 2 769 473 89 0 25 chr5 24133130 24133211 -128404048 + (TTCC)n Simple_repeat Simple_repeat 1 79 0 2 769 658 282 59 0 chr5 24133211 24133348 -128403911 - ID_B1 SINE B4 0 224 78 2 769 266 0 0 29 chr5 24133348 24133383 -128403876 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 2 769 658 282 59 0 chr5 24133383 24133415 -128403844 - ID SINE ID -147 77 46 2 769 388 299 18 65 chr5 24133458 24133626 -128403633 - L1MC2 LINE L1 -236 6108 5949 2 769 24 0 0 0 chr5 24134144 24134168 -128403091 + AT_rich Low_complexity Low_complexity 1 24 0 2 769 659 194 7 80 chr5 24134168 24134319 -128402940 + B1_Mus2 SINE Alu 1 140 -7 2 769 189 0 0 0 chr5 24134330 24134351 -128402908 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 769 755 192 6 90 chr5 24134364 24134530 -128402729 - Lx8 LINE L1 -982 6491 6340 2 769 723 54 0 0 chr5 24134530 24134622 -128402637 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 769 638 239 0 0 chr5 24134631 24134744 -128402515 + Lx8 LINE L1 6212 6324 -1149 2 769 677 323 47 4 chr5 24134745 24134978 -128402281 + Lx8 LINE L1 6797 7039 -434 2 769 294 98 0 0 chr5 24135363 24135414 -128401845 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 2 769 827 175 0 0 chr5 24135442 24135579 -128401680 + B1_Mur4 SINE Alu 9 145 -5 2 769 315 0 0 0 chr5 24135580 24135615 -128401644 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 769 861 277 62 83 chr5 24135753 24136281 -128400978 + L1MD2 LINE L1 5497 6013 -346 2 769 621 251 219 52 chr5 24136502 24136712 -128400547 + B4 SINE B4 2 246 -46 2 769 666 113 0 0 chr5 24136748 24136872 -128400387 + (GA)n Simple_repeat Simple_repeat 2 125 0 2 769 314 286 83 8 chr5 24136872 24136992 -128400267 + MLT1D LTR MaLR 264 392 -113 2 769 471 230 47 22 chr5 24137033 24137182 -128400077 + L1MD2 LINE L1 6090 6358 -1 2 769 961 213 23 32 chr5 24137187 24137405 -128399854 + ID_B1 SINE B4 1 216 -8 2 769 598 291 41 52 chr5 24137437 24137705 -128399554 + B4A SINE B4 28 292 0 2 769 301 207 100 0 chr5 24137787 24137860 -128399399 - B1_Mur1 SINE Alu -13 136 54 2 769 593 254 22 7 chr5 24137888 24137959 -128399300 - B1_Mur3 SINE Alu -12 137 1 2 769 357 185 22 120 chr5 24137959 24138023 -128399236 - B4A SINE B4 -143 149 86 2 769 282 29 0 0 chr5 24138023 24138058 -128399201 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 769 357 185 22 120 chr5 24138058 24138085 -128399174 - B4A SINE B4 -207 85 67 2 769 394 194 21 11 chr5 24138143 24138237 -128399022 - B3A SINE B2 -47 151 57 2 769 1130 108 0 11 chr5 24138287 24138465 -128398794 + (TCTCC)n Simple_repeat Simple_repeat 1 176 0 2 769 454 246 15 76 chr5 24138516 24138648 -128398611 - ID_B1 SINE B4 -21 203 80 2 769 1032 182 62 29 chr5 24138657 24138929 -128398330 - Lx4B LINE L1 0 7058 6792 2 769 295 247 13 25 chr5 24138959 24139038 -128398221 + B4A SINE B4 2 79 -213 2 769 377 268 152 0 chr5 24139091 24139203 -128398056 - RSINE1 SINE B4 -34 131 3 2 769 1072 44 7 0 chr5 24139571 24139708 -128397551 + B1_Mus2 SINE Alu 1 138 -9 2 769 234 0 0 0 chr5 24139708 24139734 -128397525 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 769 946 108 64 0 chr5 24139734 24139891 -128397368 + B2_Mm2 SINE B2 29 195 0 2 769 360 268 198 13 chr5 24139898 24140067 -128397192 - B3A SINE B2 0 195 14 2 769 207 0 0 0 chr5 24140192 24140215 -128397044 + (T)n Simple_repeat Simple_repeat 1 23 0 2 769 530 290 64 106 chr5 24140472 24140927 -128396332 + RMER20B LTR ERVK 95 599 -28 2 769 340 317 114 9 chr5 24141865 24141970 -128395289 + ID_B1 SINE B4 20 135 -157 2 769 884 35 17 0 chr5 24142792 24142907 -128394352 - B1_Mus1 SINE Alu -2 146 30 2 769 260 179 37 0 chr5 24143482 24143542 -128393717 - PB1D10 SINE Alu -1 148 62 2 769 546 294 91 27 chr5 24143567 24143787 -128393472 + MER21B LTR ERV1 468 701 -162 2 769 228 189 75 0 chr5 24143791 24143844 -128393415 - MTD LTR MaLR -5 374 318 2 769 978 79 7 0 chr5 24143848 24143988 -128393271 + B1_Mur4 SINE Alu 9 149 -1 2 769 579 284 66 30 chr5 24143992 24144229 -128393030 - MTD LTR MaLR -127 294 60 2 769 1120 51 0 0 chr5 24144292 24144429 -128392830 - B1_Mm SINE Alu -10 137 1 2 769 527 284 57 13 chr5 24144979 24145136 -128392123 - ERVL-B4-int LTR ERVL -1167 4547 4384 2 769 192 40 0 0 chr5 24146028 24146053 -128391206 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 769 251 281 122 11 chr5 24146073 24146163 -128391096 + PB1 SINE Alu 21 120 -7 2 769 21 0 0 0 chr5 24146163 24146184 -128391075 + AT_rich Low_complexity Low_complexity 1 21 0 2 769 457 233 144 17 chr5 24146187 24146305 -128390954 - B1F2 SINE Alu -15 134 2 2 769 225 94 0 0 chr5 24146543 24146575 -128390684 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 769 188 135 27 0 chr5 24146584 24146621 -128390638 + (TATG)n Simple_repeat Simple_repeat 1 38 0 2 769 761 286 89 15 chr5 24146621 24146880 -128390379 - B4A SINE B4 0 292 15 2 769 276 100 0 0 chr5 24147029 24147069 -128390190 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 769 372 125 0 5 chr5 24147212 24147285 -128389974 - RMER1B Other Other -4 1062 961 2 769 258 202 161 25 chr5 24147314 24147366 -128389893 - RMER1B Other Other -854 212 161 2 769 315 0 0 0 chr5 24147366 24147401 -128389858 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 769 315 0 0 0 chr5 24147401 24147435 -128389824 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 769 258 202 161 25 chr5 24147435 24147462 -128389797 - RMER1B Other Other -906 160 122 2 769 243 0 0 0 chr5 24147501 24147528 -128389731 + (CCCCAG)n Simple_repeat Simple_repeat 6 32 0 2 769 450 0 0 0 chr5 24147550 24147600 -128389659 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 769 1076 89 0 0 chr5 24147600 24147746 -128389513 - B1_Mus2 SINE Alu -1 146 1 2 769 805 126 44 0 chr5 24147834 24147969 -128389290 + B1_Mus2 SINE Alu 6 146 -1 2 769 25 0 0 0 chr5 24147971 24147996 -128389263 + AT_rich Low_complexity Low_complexity 1 25 0 2 769 1333 57 17 0 chr5 24148223 24148400 -128388859 + B2_Mm2 SINE B2 2 181 -14 2 769 662 170 6 124 chr5 24148475 24148636 -128388623 - B1_Mur4 SINE Alu 0 150 9 2 769 565 271 0 0 chr5 24148640 24148758 -128388501 - RSINE1 SINE B4 -42 123 6 2 769 22 0 0 0 chr5 24148778 24148800 -128388459 + AT_rich Low_complexity Low_complexity 1 22 0 2 769 1014 223 15 0 chr5 24148805 24149007 -128388252 + B3 SINE B2 6 210 -6 2 769 604 232 85 5 chr5 24149021 24149220 -128388039 - B3 SINE B2 0 216 2 2 769 1277 97 16 0 chr5 24149226 24149411 -128387848 - B2_Mm2 SINE B2 -6 189 2 2 769 1065 76 0 0 chr5 24149456 24149600 -128387659 + (TTC)n Simple_repeat Simple_repeat 1 144 0 2 769 278 106 0 21 chr5 24149600 24149648 -128387611 + (CCCCCT)n Simple_repeat Simple_repeat 2 48 0 2 769 278 352 9 62 chr5 24149650 24149762 -128387497 - PB1D10 SINE Alu -5 112 7 3 769 1141 68 0 7 chr5 24149802 24149950 -128387309 + B1_Mm SINE Alu 1 147 0 3 769 189 0 0 0 chr5 24149950 24149971 -128387288 + (A)n Simple_repeat Simple_repeat 1 21 0 3 769 356 321 176 26 chr5 24150079 24150158 -128387101 - L1ME1 LINE L1 -11 6168 6087 3 769 2099 109 15 36 chr5 24150158 24150438 -128386821 + ORR1A2 LTR MaLR 1 285 -42 3 769 1581 36 0 0 chr5 24150438 24150630 -128386629 + B2_Mm1a SINE B2 1 192 -1 3 769 2099 109 15 36 chr5 24150630 24150683 -128386576 + ORR1A2 LTR MaLR 286 327 0 3 769 356 321 176 26 chr5 24150683 24151096 -128386163 - L1ME1 LINE L1 -93 6086 5602 3 769 296 303 98 105 chr5 24151229 24151495 -128385764 + ORR1D2 LTR MaLR 74 337 -33 3 769 287 297 0 26 chr5 24151640 24151716 -128385543 - ID4 SINE ID -8 75 2 3 769 981 83 0 65 chr5 24151735 24151880 -128385379 + B1_Mus2 SINE Alu 1 139 -8 3 769 279 0 0 0 chr5 24151880 24151911 -128385348 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 3 769 619 297 137 0 chr5 24151928 24152147 -128385112 + B4A SINE B4 3 251 -41 3 769 186 176 59 24 chr5 24152219 24152388 -128384871 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 3 769 187 161 36 0 chr5 24152372 24152428 -128384831 + (TATAA)n Simple_repeat Simple_repeat 5 62 0 3 769 23 33 0 0 chr5 24152431 24152461 -128384798 + AT_rich Low_complexity Low_complexity 1 30 0 3 769 775 203 0 0 chr5 24152461 24152594 -128384665 - B1_Mur1 SINE Alu -15 134 2 3 769 444 216 0 0 chr5 24152608 24152710 -128384549 + (CATA)n Simple_repeat Simple_repeat 2 103 0 3 769 494 309 18 68 chr5 24152713 24152800 -128384459 + ID SINE ID 7 85 -139 3 769 236 362 48 0 chr5 24152800 24152905 -128384354 + PB1D10 SINE Alu 3 112 -5 3 769 282 270 42 67 chr5 24153038 24153157 -128384102 - PB1D10 SINE Alu -1 116 1 3 769 697 244 45 0 chr5 24153157 24153232 -128384027 - ID SINE ID -139 85 3 3 769 355 278 26 9 chr5 24153256 24153372 -128383887 - PB1D7 SINE Alu 0 120 3 3 769 208 0 62 0 chr5 24154927 24154959 -128382300 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 769 1555 221 48 75 chr5 24155122 24155334 -128381925 + MTD LTR MaLR 1 209 -210 3 769 1167 54 0 0 chr5 24155334 24155481 -128381778 + B1_Mus1 SINE Alu 2 148 0 3 769 1555 221 48 75 chr5 24155481 24155684 -128381575 + MTD LTR MaLR 210 405 -14 3 769 577 198 194 17 chr5 24155697 24155872 -128381387 + MTD-int LTR MaLR 1 206 -1052 3 769 640 114 37 37 chr5 24155882 24155991 -128381268 + B1_Mur4 SINE Alu 33 141 -9 3 769 452 286 89 30 chr5 24155936 24156172 -128381087 + MTD-int LTR MaLR 394 548 -710 3 769 1090 253 178 19 chr5 24156176 24156480 -128380779 + MTD-int LTR MaLR 783 1110 -148 3 769 776 135 37 8 chr5 24156480 24156614 -128380645 - B1_Mus2 SINE Alu -5 142 5 3 769 1090 253 178 19 chr5 24156614 24156720 -128380539 + MTD-int LTR MaLR 1111 1258 0 3 769 1343 201 91 14 chr5 24156740 24157082 -128380177 + MTD LTR MaLR 41 405 -14 3 769 270 292 15 77 chr5 24157579 24157709 -128379550 + MLT1D LTR MaLR 70 191 -314 3 769 353 81 16 0 chr5 24157726 24157788 -128379471 + (TC)n Simple_repeat Simple_repeat 1 63 0 3 769 284 0 28 0 chr5 24157791 24157827 -128379432 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 769 533 193 0 76 chr5 24158306 24158424 -128378835 - B1_Mur3 SINE Alu -5 143 34 3 769 1192 41 0 0 chr5 24159395 24159541 -128377718 + B1_Mm SINE Alu 2 147 0 3 769 204 67 0 0 chr5 24159541 24159571 -128377688 + (A)n Simple_repeat Simple_repeat 1 30 0 3 769 810 174 0 14 chr5 24159722 24159868 -128377391 - B1_Mus2 SINE Alu -1 146 3 3 769 21 0 0 0 chr5 24159868 24159889 -128377370 + AT_rich Low_complexity Low_complexity 1 21 0 3 769 328 325 99 61 chr5 24159927 24160002 -128377257 - B4A SINE B4 -5 287 221 3 769 814 152 27 20 chr5 24160002 24160150 -128377109 - B1_Mur3 SINE Alu 0 149 1 3 769 328 325 99 61 chr5 24160150 24160163 -128377096 - B4A SINE B4 -72 220 209 3 769 449 225 130 23 chr5 24160163 24160340 -128376919 - B3A SINE B2 0 198 3 3 769 328 325 99 61 chr5 24160340 24160357 -128376902 - B4A SINE B4 -84 208 140 3 769 329 222 77 11 chr5 24160357 24160448 -128376811 - B1F1 SINE Alu -46 103 7 3 769 328 325 99 61 chr5 24160448 24160463 -128376796 - B4A SINE B4 -84 139 68 3 769 1831 162 61 14 chr5 24160541 24160903 -128376356 - MTD LTR MaLR 0 419 41 3 769 777 263 118 37 chr5 24161201 24161549 -128375710 - MTEa LTR MaLR -1 378 3 3 769 269 306 109 7 chr5 24161967 24162105 -128375154 - MLT1G3 LTR MaLR -23 568 417 3 769 564 159 17 0 chr5 24162129 24162305 -128374954 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 769 608 113 58 23 chr5 24162284 24162456 -128374803 + (TCTG)n Simple_repeat Simple_repeat 1 178 0 3 769 644 161 17 0 chr5 24162456 24162756 -128374503 + (TG)n Simple_repeat Simple_repeat 1 305 0 3 769 385 181 0 0 chr5 24162759 24162831 -128374428 + (TCTG)n Simple_repeat Simple_repeat 3 74 0 3 769 640 152 12 0 chr5 24162831 24162996 -128374263 + (TG)n Simple_repeat Simple_repeat 2 168 0 3 769 594 286 31 132 chr5 24162996 24163299 -128373960 - MLT1G3 LTR MaLR -194 401 71 3 769 369 326 183 33 chr5 24163794 24164095 -128373164 + Arthur1 DNA Tip100 2860 3205 -742 3 769 736 283 92 92 chr5 24164289 24164581 -128372678 - B4 SINE B4 0 292 1 3 769 3757 60 28 2 chr5 24164633 24165132 -128372127 - RLTR1B LTR ERV1 0 512 1 3 769 624 254 8 0 chr5 24165163 24165297 -128371962 + B1_Mur3 SINE Alu 2 136 -13 3 769 243 0 0 0 chr5 24165297 24165324 -128371935 + (CAGAA)n Simple_repeat Simple_repeat 1 27 0 3 769 1065 211 9 5 chr5 24165335 24165549 -128371710 + B3 SINE B2 2 216 0 3 769 471 18 0 0 chr5 24165776 24165832 -128371427 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 769 711 177 7 7 chr5 24166083 24166225 -128371034 - B1_Mus1 SINE Alu 0 148 7 3 769 462 233 6 115 chr5 24166225 24166248 -128371011 - ID_B1 SINE B4 0 224 78 3 769 1415 246 43 62 chr5 24166248 24166686 -128370573 - Lx6 LINE L1 -9 7451 7022 3 769 875 79 0 8 chr5 24166686 24166813 -128370446 - B1_Mm SINE Alu -21 126 1 3 769 427 227 48 90 chr5 24166813 24166845 -128370414 - MT2B LTR ERVL -450 151 126 3 769 1239 41 0 20 chr5 24167153 24167302 -128369957 - B1_Mus2 SINE Alu 0 147 2 3 769 1228 159 76 0 chr5 24167423 24167687 -128369572 - RMER19B LTR ERVK -554 348 1 3 769 607 192 41 24 chr5 24167687 24167806 -128369453 + RLTR19 LTR ERVK 378 498 -1 3 769 675 140 169 0 chr5 24167806 24167942 -128369317 + MurERV4-int LTR ERVK 3303 3461 -1799 3 769 1040 45 7 7 chr5 24167946 24168081 -128369178 + B1_Mus1 SINE Alu 14 148 0 3 769 4108 209 28 35 chr5 24168090 24168739 -128368520 + MurERV4-int LTR ERVK 3445 4096 -1164 3 769 213 39 0 0 chr5 24168739 24168765 -128368494 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 769 1111 64 7 7 chr5 24168766 24168907 -128368352 - B1_Mm SINE Alu -5 142 2 3 769 4108 209 28 35 chr5 24168907 24169284 -128367975 + MurERV4-int LTR ERVK 4097 4466 -794 3 769 1352 68 6 6 chr5 24169285 24169462 -128367797 + B2_Mm1t SINE B2 3 179 -14 3 769 375 34 0 79 chr5 24169517 24169580 -128367679 + B2_Mm1t SINE B2 129 186 -7 3 769 1886 189 0 26 chr5 24169580 24169806 -128367453 + MYSERV6-int LTR ERVK 3902 4126 -4833 3 769 1864 132 140 25 chr5 24169806 24170171 -128367088 - MTB_Mm LTR MaLR 0 407 1 3 769 1886 189 0 26 chr5 24170171 24170325 -128366934 + MYSERV6-int LTR ERVK 4127 4272 -4687 3 769 1624 150 3 39 chr5 24170321 24170606 -128366653 + RMER6-int LTR ERVK 2895 3169 -8 3 769 3615 142 87 37 chr5 24170607 24170819 -128366440 + RMER6D LTR ERVK 8 220 -500 3 769 1182 55 0 0 chr5 24170819 24170965 -128366294 + B1_Mm SINE Alu 1 146 -1 3 769 3615 142 87 37 chr5 24170965 24171118 -128366141 + RMER6D LTR ERVK 221 371 -349 3 769 249 33 0 0 chr5 24171118 24171148 -128366111 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 769 3615 142 87 37 chr5 24171148 24171435 -128365824 + RMER6D LTR ERVK 372 694 -26 3 769 189 107 0 0 chr5 24171435 24171463 -128365796 + (CATCT)n Simple_repeat Simple_repeat 3 30 0 3 769 3615 142 87 37 chr5 24171463 24171487 -128365772 + RMER6D LTR ERVK 695 718 -2 3 769 6355 165 55 31 chr5 24171589 24172649 -128364610 + RodERV21-int LTR ERV1 3503 4594 -397 3 769 1508 37 16 11 chr5 24172649 24172838 -128364421 + B2_Mm2 SINE B2 2 191 -4 3 769 6355 165 55 31 chr5 24172838 24173063 -128364196 + RodERV21-int LTR ERV1 4595 4819 -172 3 769 346 260 0 103 chr5 24173063 24173179 -128364080 + RMER4B LTR ERVK 348 451 -134 3 769 630 280 142 16 chr5 24173314 24173561 -128363698 + RMER21B LTR ERV1 288 565 -277 3 769 228 306 85 59 chr5 24173629 24173782 -128363477 - MER31B LTR ERV1 -309 157 1 3 769 881 244 77 82 chr5 24173792 24174171 -128363088 + MTE2a LTR MaLR 3 379 0 3 769 671 65 11 0 chr5 24174333 24174426 -128362833 + (TTTC)n Simple_repeat Simple_repeat 3 96 0 3 769 821 68 152 8 chr5 24174427 24174545 -128362714 - B1_Mm SINE Alu -11 136 2 3 769 1304 20 0 0 chr5 24174714 24174860 -128362399 + B1_Mus2 SINE Alu 2 147 0 3 769 216 0 0 0 chr5 24174860 24174884 -128362375 + (A)n Simple_repeat Simple_repeat 1 24 0 3 769 1010 229 16 11 chr5 24174963 24175153 -128362106 + B3 SINE B2 21 211 -5 3 769 576 201 2 4 chr5 24175264 24175377 -128361882 + B1F SINE Alu 17 129 -19 3 769 318 275 107 96 chr5 24175434 24175631 -128361628 - MLT1A0 LTR MaLR -164 201 3 3 769 809 201 44 0 chr5 24175595 24175754 -128361505 + B2_Mm2 SINE B2 1 166 -29 3 769 604 167 8 26 chr5 24175783 24175900 -128361359 - B1_Mur3 SINE Alu -1 148 34 3 769 729 196 26 53 chr5 24175955 24176022 -128361237 - B1_Mus2 SINE Alu 0 147 58 3 769 353 221 10 104 chr5 24176022 24176052 -128361207 - MT2B LTR ERVL -362 239 215 3 769 4915 45 16 0 chr5 24176052 24176629 -128360630 + LTRIS_Mus LTR ERV1 2 587 0 3 769 729 196 26 53 chr5 24176629 24176682 -128360577 - B1_Mus2 SINE Alu -90 57 1 3 769 353 221 10 104 chr5 24176682 24176694 -128360565 - MT2B LTR ERVL -387 214 153 3 769 1464 211 36 10 chr5 24176698 24176802 -128360457 + RLTR18B LTR ERVK 2 106 -406 3 769 186 43 0 0 chr5 24176802 24176825 -128360434 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 769 1464 211 36 10 chr5 24176825 24177022 -128360237 + RLTR18B LTR ERVK 107 311 -201 3 769 1244 193 235 80 chr5 24177022 24177473 -128359786 + RMER2 LTR ERV1 1 521 -46 3 769 261 0 0 0 chr5 24177689 24177718 -128359541 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 769 909 339 73 50 chr5 24178390 24179339 -128357920 + MMERGLN-int LTR ERV1 1317 2287 -5491 3 769 322 276 88 22 chr5 24179381 24179518 -128357741 + MMERGLN-int LTR ERV1 2226 2371 -5230 3 769 1317 338 39 36 chr5 24179664 24180839 -128356420 + MMERGLN-int LTR ERV1 2552 3781 -3775 3 769 1027 193 7 97 chr5 24180849 24181118 -128356141 + RMER17A-int LTR ERVK 1217 1461 -267 3 769 892 228 92 11 chr5 24181111 24181400 -128355859 + MMERGLN-int LTR ERV1 3702 3915 -1148 3 769 314 266 39 39 chr5 24181595 24181724 -128355535 + RLTR14-int LTR ERV1 3748 3876 -1441 3 769 1204 36 0 0 chr5 24182043 24182181 -128355078 + B1_Mus2 SINE Alu 1 138 -9 3 769 279 0 0 0 chr5 24182181 24182212 -128355047 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 769 770 326 26 3 chr5 24183355 24183742 -128353517 + MuLV-int LTR ERV1 7092 7487 -119 4 769 1430 181 126 90 chr5 24183839 24184252 -128353007 + RMER2 LTR ERV1 1 428 -139 4 769 1212 35 0 14 chr5 24184352 24184495 -128352764 + B1_Mm SINE Alu 5 145 -2 4 769 471 165 35 23 chr5 24184515 24184581 -128352678 + RLTR18B LTR ERVK 308 374 -138 4 769 5525 119 171 2 chr5 24184581 24185525 -128351734 - RLTR25A LTR ERVK 0 1103 1 4 769 377 256 13 0 chr5 24185525 24185586 -128351673 + RLTR18B LTR ERVK 367 428 -84 4 769 383 247 0 0 chr5 24185693 24185770 -128351489 - B3A SINE B2 -121 77 1 4 769 249 216 0 0 chr5 24185852 24185900 -128351359 + PB1D9 SINE Alu 1 48 -101 4 769 1124 297 23 42 chr5 24185914 24185937 -128351322 + MT2A LTR ERVL 152 178 -355 4 769 230 95 24 0 chr5 24185937 24185979 -128351280 + (TAG)n Simple_repeat Simple_repeat 2 44 0 4 769 1124 297 23 42 chr5 24185979 24186264 -128350995 + MT2A LTR ERVL 179 453 -80 4 769 373 346 95 5 chr5 24186356 24186545 -128350714 + L1MB5 LINE L1 5396 5601 -577 4 769 732 245 75 25 chr5 24186549 24186750 -128350509 + B4A SINE B4 1 211 -81 4 769 808 271 148 30 chr5 24186750 24187004 -128350255 + MTE2a LTR MaLR 1 297 -82 4 769 1646 36 0 5 chr5 24187004 24187198 -128350061 + B2_Mm1t SINE B2 1 193 0 4 769 808 271 148 30 chr5 24187198 24187281 -128349978 + MTE2a LTR MaLR 298 378 -1 4 769 1886 162 35 50 chr5 24187286 24187747 -128349512 + RLTR12B LTR ERVK 1 509 -19 4 769 615 331 41 0 chr5 24187884 24188174 -128349085 + L1MB5 LINE L1 5599 5900 -274 4 769 182 62 31 0 chr5 24188307 24188339 -128348920 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 769 1177 49 0 20 chr5 24188339 24188477 -128348782 - B1_Mus2 SINE Alu -9 138 1 4 769 526 87 25 0 chr5 24188488 24188577 -128348682 - B1_Mur4 SINE Alu 0 150 59 4 769 294 292 38 86 chr5 24188672 24188777 -128348482 + RMER10B LTR ERVL 292 391 -7 4 769 366 286 57 7 chr5 24188868 24189009 -128348250 + L1MB5 LINE L1 5908 6055 -129 4 769 288 322 42 53 chr5 24189045 24189140 -128348119 - B1F2 SINE Alu -52 97 4 4 769 239 268 169 0 chr5 24189080 24189151 -128348108 - B4 SINE B4 -143 149 67 4 769 888 175 56 17 chr5 24189173 24189353 -128347906 + B2_Mm2 SINE B2 2 188 -7 4 769 248 271 15 8 chr5 24189353 24189487 -128347772 + L1MB8 LINE L1 6043 6177 -1 4 769 306 164 0 0 chr5 24189644 24189699 -128347560 + T-rich Low_complexity Low_complexity 1 55 0 4 769 985 136 7 0 chr5 24189702 24189849 -128347410 - B1_Mus1 SINE Alu 0 148 1 4 769 1386 96 5 0 chr5 24189849 24190035 -128347224 - B2_Mm1a SINE B2 -4 189 2 4 769 250 24 23 45 chr5 24190059 24190103 -128347156 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 769 992 47 102 0 chr5 24190106 24190233 -128347026 - B1_Mm SINE Alu -6 141 2 4 769 299 118 20 0 chr5 24190254 24190305 -128346954 - B1_Mm SINE Alu -1 146 95 4 769 311 315 161 35 chr5 24190408 24190668 -128346591 - MLT1H LTR MaLR -20 529 237 4 769 189 0 0 0 chr5 24190725 24190746 -128346513 + (T)n Simple_repeat Simple_repeat 1 21 0 4 769 1119 62 14 0 chr5 24190757 24190902 -128346357 - B1_Mus1 SINE Alu 0 148 2 4 769 21 36 0 0 chr5 24191732 24191760 -128345499 + GC_rich Low_complexity Low_complexity 1 28 0 4 769 242 257 29 29 chr5 24191890 24191994 -128345265 + G-rich Low_complexity Low_complexity 5 108 0 4 769 345 168 0 7 chr5 24192443 24192507 -128344752 - B1_Mur2 SINE Alu -1 148 60 4 769 720 153 68 74 chr5 24192566 24192714 -128344545 + B1_Mur2 SINE Alu 3 149 0 4 769 1189 43 7 0 chr5 24192731 24192871 -128344388 + B1_Mm SINE Alu 1 141 -6 4 769 198 0 0 0 chr5 24192873 24192895 -128344364 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 4 769 1176 82 0 0 chr5 24193084 24193231 -128344028 + B1_Mus2 SINE Alu 1 147 0 4 769 261 119 0 0 chr5 24193349 24193391 -128343868 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 769 32 0 0 0 chr5 24194031 24194063 -128343196 + AT_rich Low_complexity Low_complexity 1 32 0 4 769 1059 60 0 0 chr5 24194063 24194197 -128343062 - B1_Mus2 SINE Alu -5 142 9 4 769 463 231 78 108 chr5 24194093 24194297 -128342962 - MT2B LTR ERVL -337 264 67 4 769 363 255 78 0 chr5 24194211 24194313 -128342946 - B1_Mm SINE Alu -37 110 1 4 769 599 273 59 64 chr5 24194455 24194497 -128342762 - B3A SINE B2 -14 181 129 4 769 558 124 0 0 chr5 24194497 24194586 -128342673 + (TG)n Simple_repeat Simple_repeat 2 90 0 4 769 647 234 14 21 chr5 24194586 24194726 -128342533 - B3 SINE B2 -77 139 1 4 769 347 240 83 83 chr5 24194885 24195017 -128342242 + MT2B LTR ERVL 145 276 -325 4 769 714 194 37 7 chr5 24194903 24195038 -128342221 + B1_Mur3 SINE Alu 5 143 -6 4 769 1164 69 14 0 chr5 24196151 24196295 -128340964 - B1_Mus1 SINE Alu -1 147 2 4 769 239 337 233 0 chr5 24196420 24196592 -128340667 + MER21B LTR ERV1 1 212 -651 4 769 1875 202 112 43 chr5 24196629 24197145 -128340114 + RLTR31_Mur LTR ERVK 1 552 -1 4 769 572 260 82 7 chr5 24197352 24197499 -128339760 + B3A SINE B2 2 159 -39 4 769 1144 65 0 0 chr5 24197500 24197638 -128339621 - B1_Mus1 SINE Alu -10 138 1 4 769 545 257 58 27 chr5 24197732 24197920 -128339339 + B2_Mm2 SINE B2 2 195 0 4 769 1112 82 7 7 chr5 24197922 24198070 -128339189 + B1_Mus1 SINE Alu 1 148 0 4 769 222 196 0 42 chr5 24198077 24198125 -128339134 - B3A SINE B2 -152 46 1 4 769 568 287 44 0 chr5 24198143 24198279 -128338980 - RSINE1 SINE B4 -11 154 13 4 769 249 198 113 83 chr5 24198858 24198956 -128338303 - B1_Mur4 SINE Alu -1 149 14 4 769 1538 52 0 30 chr5 24198958 24199156 -128338103 + B2_Mm1a SINE B2 2 193 0 4 769 220 294 86 148 chr5 24199290 24199418 -128337841 + PB1D9 SINE Alu 1 120 0 4 769 339 237 157 7 chr5 24199950 24200090 -128337169 + L1MB8 LINE L1 5891 6051 -127 4 769 288 196 18 0 chr5 24200158 24200214 -128337045 + MT2B2 LTR ERVL 175 231 -353 4 769 279 270 26 39 chr5 24200206 24200283 -128336976 - B3A SINE B2 -113 85 10 4 769 354 291 101 50 chr5 24201835 24201994 -128335265 + MER20 DNA MER1_type 1 167 -52 4 769 249 316 48 48 chr5 24202381 24202484 -128334775 + MLT1I LTR MaLR 171 273 -138 4 769 353 240 129 10 chr5 24202561 24202662 -128334597 + RSINE1 SINE B4 4 116 -49 4 769 333 0 0 0 chr5 24202674 24202711 -128334548 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 769 29 0 0 0 chr5 24202721 24202750 -128334509 + AT_rich Low_complexity Low_complexity 1 29 0 4 769 315 272 61 70 chr5 24203447 24203612 -128333647 + RSINE1 SINE B4 2 165 0 4 769 618 267 80 0 chr5 24203741 24203891 -128333368 + RSINE1 SINE B4 4 165 0 4 769 501 279 219 27 chr5 24204892 24205220 -128332039 - RLTR12B LTR ERVK -96 432 42 4 769 389 307 139 97 chr5 24205565 24205688 -128331571 - Charlie6 DNA MER1_type -796 2704 2609 4 769 721 211 35 7 chr5 24205688 24205831 -128331428 - B1_Mur2 SINE Alu -1 148 2 4 769 389 307 139 97 chr5 24205831 24206190 -128331069 - Charlie6 DNA MER1_type -892 2608 2202 4 769 195 157 0 0 chr5 24206231 24206282 -128330977 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 4 769 223 150 25 0 chr5 24206819 24206859 -128330400 + MER5B DNA MER1_type 10 50 -128 4 769 207 219 52 10 chr5 24207556 24207610 -128329649 + T-rich Low_complexity Low_complexity 49 105 0 4 769 383 252 56 9 chr5 24207610 24207718 -128329541 - PB1D10 SINE Alu 0 117 5 4 769 207 219 52 10 chr5 24207718 24207760 -128329499 + T-rich Low_complexity Low_complexity 6 48 0 4 769 1146 62 0 20 chr5 24207760 24207908 -128329351 - B1_Mus2 SINE Alu 0 147 3 4 769 1128 155 37 0 chr5 24208647 24208834 -128328425 + B2_Mm2 SINE B2 2 195 0 4 769 577 251 122 30 chr5 24209545 24209742 -128327517 - ID_B1 SINE B4 -5 219 5 4 769 1513 78 0 0 chr5 24209861 24210052 -128327207 + B2_Mm1a SINE B2 2 192 -1 4 769 316 195 35 105 chr5 24210675 24210761 -128326498 + RSINE1 SINE B4 41 120 -45 4 769 405 0 0 0 chr5 24210761 24210806 -128326453 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 769 211 281 35 0 chr5 24211228 24211285 -128325974 - ID4_ SINE ID -24 59 1 4 769 3956 142 62 17 chr5 24211367 24212028 -128325231 - RLTR17 LTR ERVK -1 691 1 4 769 270 136 0 0 chr5 24212972 24213016 -128324243 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 769 889 172 28 0 chr5 24213021 24213166 -128324093 - B1_Mur2 SINE Alu 0 149 1 4 769 486 255 145 0 chr5 24213283 24213428 -128323831 + B4 SINE B4 1 166 -126 4 769 201 163 0 58 chr5 24213680 24213732 -128323527 + (GGGTG)n Simple_repeat Simple_repeat 1 49 0 4 769 474 193 80 48 chr5 24213856 24213981 -128323278 + B1_Mur2 SINE Alu 5 133 -16 4 769 788 192 0 0 chr5 24217426 24217556 -128319703 + B1_Mus1 SINE Alu 9 138 -10 4 769 852 209 31 36 chr5 24217573 24217767 -128319492 - B3A SINE B2 -4 194 2 4 769 197 300 57 0 chr5 24219263 24219333 -128317926 - MER5A DNA MER1_type -24 165 92 4 769 554 270 126 126 chr5 24219676 24220024 -128317235 + MTE2a LTR MaLR 20 367 -12 4 769 236 167 0 0 chr5 24221026 24221062 -128316197 + tRNA-Lys-AAG tRNA tRNA 3 38 -38 4 769 244 306 9 18 chr5 24222590 24222700 -128314559 + (TG)n Simple_repeat Simple_repeat 2 110 0 4 769 241 167 29 29 chr5 24222701 24222769 -128314490 + (CATG)n Simple_repeat Simple_repeat 1 68 0 4 769 180 234 0 0 chr5 24222801 24222848 -128314411 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 769 555 202 123 18 chr5 24222868 24223039 -128314220 - B4 SINE B4 -102 190 2 4 769 214 180 59 20 chr5 24223311 24223362 -128313897 + B1_Mus2 SINE Alu 2 54 -93 5 769 621 47 17 86 chr5 24223445 24223561 -128313698 + B1_Mur4 SINE Alu 43 150 0 5 769 496 265 0 33 chr5 24224569 24224690 -128312569 + B1F SINE Alu 32 148 -1 5 769 420 250 0 0 chr5 24225158 24225246 -128312013 + B1_Mus1 SINE Alu 1 88 -60 5 769 1055 244 40 7 chr5 24225355 24225632 -128311627 + MTEb LTR MaLR 1 286 -93 5 769 1994 230 28 55 chr5 24225654 24226054 -128311205 + RLTR11A2 LTR ERVK 32 424 -103 5 769 3400 13 0 0 chr5 24226054 24226450 -128310809 - L1Md_A LINE L1 0 6582 6187 5 769 1994 230 28 55 chr5 24226450 24226559 -128310700 + RLTR11A2 LTR ERVK 425 527 0 5 769 311 319 6 24 chr5 24226788 24226958 -128310301 + (TATG)n Simple_repeat Simple_repeat 4 170 0 5 769 577 235 15 0 chr5 24227183 24227319 -128309940 - B1F SINE Alu -8 141 4 5 769 1025 145 0 6 chr5 24228000 24228180 -128309079 + CT-rich Low_complexity Low_complexity 1 179 0 5 769 459 52 0 0 chr5 24228180 24228238 -128309021 + (TCCC)n Simple_repeat Simple_repeat 3 60 0 5 769 1083 82 0 20 chr5 24228259 24228409 -128308850 - B1_Mus1 SINE Alu 0 148 2 5 769 285 230 136 11 chr5 24228729 24228817 -128308442 - PB1D7 SINE Alu -12 108 10 5 769 186 71 0 0 chr5 24228839 24228867 -128308392 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 769 234 0 0 0 chr5 24229021 24229047 -128308212 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 769 411 21 0 0 chr5 24229047 24229094 -128308165 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 769 549 264 98 98 chr5 24229188 24229216 -128308043 - B4A SINE B4 -2 290 261 5 769 342 0 0 0 chr5 24229216 24229254 -128308005 + (CATA)n Simple_repeat Simple_repeat 2 39 0 5 769 549 264 98 98 chr5 24229254 24229511 -128307748 - B4A SINE B4 -32 260 5 5 769 395 230 60 0 chr5 24229530 24229630 -128307629 - PB1D10 SINE Alu -9 108 3 5 769 349 291 117 60 chr5 24229728 24229977 -128307282 - MER121 Unknown Unknown -81 331 69 5 769 218 125 0 0 chr5 24231881 24231913 -128305346 + B3 SINE B2 11 42 -174 5 769 1006 221 19 0 chr5 24232265 24232473 -128304786 + B3 SINE B2 2 213 -3 5 769 308 140 18 0 chr5 24232602 24232659 -128304600 + B3A SINE B2 1 58 -140 5 769 408 141 0 49 chr5 24232663 24232745 -128304514 + B2_Mm2 SINE B2 112 189 -6 5 769 410 273 91 0 chr5 24232761 24232882 -128304377 + B1F2 SINE Alu 7 138 -11 5 769 338 177 114 0 chr5 24232888 24232967 -128304292 + B1_Mus1 SINE Alu 33 120 -28 5 769 469 318 91 43 chr5 24233064 24233251 -128304008 + B4 SINE B4 88 283 -9 5 769 270 0 0 0 chr5 24233518 24233548 -128303711 + (T)n Simple_repeat Simple_repeat 1 30 0 5 769 1158 55 0 0 chr5 24233548 24233694 -128303565 - B1_Mus2 SINE Alu 0 147 2 5 769 848 121 41 28 chr5 24233696 24233841 -128303418 - B1_Mur3 SINE Alu 0 149 3 5 769 284 240 119 40 chr5 24234240 24234315 -128302944 + ID_B1 SINE B4 89 172 -52 5 769 2052 149 99 5 chr5 24234315 24234700 -128302559 + MTC LTR MaLR 1 421 0 5 769 284 240 119 40 chr5 24234700 24234750 -128302509 + ID_B1 SINE B4 173 224 0 5 769 953 73 0 152 chr5 24234753 24234930 -128302329 + B1_Mur4 SINE Alu 1 150 0 5 769 216 97 0 0 chr5 24234930 24234961 -128302298 + (A)n Simple_repeat Simple_repeat 1 31 0 5 769 240 307 37 93 chr5 24237815 24238084 -128299175 - RMER17C LTR ERVK -32 378 125 5 769 1099 47 0 33 chr5 24238479 24238632 -128298627 + B1_Mus1 SINE Alu 1 148 0 5 769 387 0 0 0 chr5 24239067 24239110 -128298149 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 769 265 0 75 0 chr5 24240110 24240150 -128297109 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 769 1079 58 0 0 chr5 24240150 24240287 -128296972 - B1_Mus2 SINE Alu -9 138 2 5 769 1027 78 0 0 chr5 24240602 24240744 -128296515 + B1_Mus1 SINE Alu 7 148 0 5 769 420 262 39 99 chr5 24240606 24240788 -128296471 + B4A SINE B4 95 265 -27 5 769 339 286 0 0 chr5 24240798 24240882 -128296377 + PB1D10 SINE Alu 14 97 -20 5 769 243 0 0 0 chr5 24241242 24241269 -128295990 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 769 286 254 0 0 chr5 24241388 24241451 -128295808 + RSINE1 SINE B4 65 127 -38 5 769 808 226 45 13 chr5 24241436 24241649 -128295610 - MTD LTR MaLR -190 210 1 5 769 303 244 24 0 chr5 24241682 24241764 -128295495 + L1MB8 LINE L1 6025 6108 -70 5 769 281 354 172 9 chr5 24242153 24242333 -128294926 + L1MB5 LINE L1 5740 5937 -237 5 769 321 26 0 0 chr5 24242333 24242371 -128294888 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 5 769 281 354 172 9 chr5 24242371 24242532 -128294727 + L1MB5 LINE L1 5938 6136 -38 5 769 955 229 18 0 chr5 24242552 24242770 -128294489 - ID_B1 SINE B4 -1 223 2 5 769 976 149 21 32 chr5 24242900 24243087 -128294172 + ORR1B1 LTR MaLR 41 225 -169 5 769 27 49 0 0 chr5 24243143 24243184 -128294075 + AT_rich Low_complexity Low_complexity 1 41 0 5 769 977 141 27 48 chr5 24243198 24243321 -128293938 + ORR1B1 LTR MaLR 211 330 -64 5 769 1022 110 0 0 chr5 24243321 24243467 -128293792 + B1_Mus1 SINE Alu 2 147 -1 5 769 977 141 27 48 chr5 24243467 24243530 -128293729 + ORR1B1 LTR MaLR 331 393 -1 5 769 507 243 150 7 chr5 24243571 24243724 -128293535 + B4A SINE B4 112 286 -6 5 769 594 287 159 48 chr5 24243806 24244231 -128293028 - RLTR18 LTR ERVK -135 481 24 5 769 1224 103 5 5 chr5 24244279 24244465 -128292794 + B2_Mm2 SINE B2 1 186 -9 5 769 356 169 84 0 chr5 24244753 24244824 -128292435 + RSINE1 SINE B4 48 124 -41 5 769 868 127 21 0 chr5 24244853 24244995 -128292264 + B1_Mur4 SINE Alu 6 150 0 5 769 605 266 131 30 chr5 24245298 24245596 -128291663 + L1MEc LINE L1 38 365 -6035 5 769 540 345 93 34 chr5 24245742 24246120 -128291139 + L1MEc LINE L1 998 1397 -5003 5 769 216 324 42 0 chr5 24246133 24246204 -128291055 + RSINE1 SINE B4 35 108 -57 5 769 848 209 92 20 chr5 24246237 24246432 -128290827 + B3 SINE B2 1 209 -7 5 769 580 279 29 0 chr5 24246470 24246606 -128290653 + RSINE1 SINE B4 8 147 -18 5 769 192 111 0 0 chr5 24246632 24246668 -128290591 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 769 592 178 101 22 chr5 24246691 24246829 -128290430 - B1_Mur4 SINE Alu 0 150 2 5 769 419 217 183 0 chr5 24246872 24246992 -128290267 + B1F2 SINE Alu 3 144 -5 5 769 312 344 0 8 chr5 24247308 24247440 -128289819 + (TG)n Simple_repeat Simple_repeat 2 132 0 5 769 372 299 108 64 chr5 24247712 24247973 -128289286 - B4 SINE B4 0 292 29 5 769 316 261 22 11 chr5 24248180 24248269 -128288990 - RMER5 LTR ERV1 -113 421 332 5 96 628 209 100 42 chr5 24248280 24248446 -128288813 + MTE2b LTR MaLR 1 181 -198 5 770 1543 22 0 0 chr5 24248446 24248624 -128288635 + B2_Mm1a SINE B2 1 178 -15 5 770 384 22 0 0 chr5 24248626 24248671 -128288588 + (GAA)n Simple_repeat Simple_repeat 2 46 0 5 770 628 209 100 42 chr5 24248671 24248691 -128288568 + MTE2b LTR MaLR 182 201 -178 5 770 690 243 44 39 chr5 24248879 24249059 -128288200 - RLTR18B LTR ERVK -329 183 3 5 770 1124 82 0 0 chr5 24249090 24249236 -128288023 - B1_Mm SINE Alu 0 147 2 5 770 647 272 7 7 chr5 24249238 24249386 -128287873 - B4A SINE B4 -59 233 86 5 770 393 252 118 0 chr5 24249402 24249521 -128287738 + B3A SINE B2 38 170 -28 5 770 405 0 0 0 chr5 24249523 24249568 -128287691 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 770 342 0 0 0 chr5 24249568 24249605 -128287654 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 770 419 142 9 2 chr5 24249621 24249706 -128287553 + B1_Mus2 SINE Alu 24 111 -38 5 770 414 295 92 15 chr5 24249712 24249843 -128287416 + RLTR18 LTR ERVK 383 523 -93 5 770 955 114 0 0 chr5 24250306 24250446 -128286813 - B1_Mur4 SINE Alu 0 150 11 5 770 609 297 110 62 chr5 24252141 24252478 -128284781 + ORR1E LTR MaLR 7 359 0 5 770 630 125 19 0 chr5 24252535 24252639 -128284620 - B1_Mur4 SINE Alu 0 150 45 5 770 396 227 17 0 chr5 24252674 24252850 -128284409 + CT-rich Low_complexity Low_complexity 1 179 0 5 770 410 239 32 104 chr5 24252850 24253004 -128284255 - ID_B1 SINE B4 -79 145 3 5 770 4428 105 60 6 chr5 24253813 24254495 -128282764 + RMER19A LTR ERVK 1 720 -17 5 770 1148 54 0 0 chr5 24254495 24254642 -128282617 + B1_Mus2 SINE Alu 1 147 0 5 770 563 207 96 0 chr5 24254878 24255013 -128282246 - B1_Mur1 SINE Alu -1 148 1 5 770 270 306 75 68 chr5 24254883 24255030 -128282229 - B4 SINE B4 -72 220 73 5 770 302 317 141 47 chr5 24255146 24255338 -128281921 + MIRb SINE MIR 56 265 -3 5 770 335 309 5 58 chr5 24256391 24256580 -128280679 + C-rich Low_complexity Low_complexity 1 179 0 5 770 27 0 0 0 chr5 24257060 24257087 -128280172 + GC_rich Low_complexity Low_complexity 1 27 0 5 770 234 91 0 0 chr5 24257976 24258009 -128279250 + (AGGGGG)n Simple_repeat Simple_repeat 6 38 0 5 770 914 214 66 0 chr5 24258403 24258599 -128278660 + B3 SINE B2 5 213 -3 5 770 282 56 0 0 chr5 24260219 24260255 -128277004 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 770 441 129 0 0 chr5 24261302 24261372 -128275887 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 770 295 248 147 10 chr5 24261420 24261522 -128275737 - B4A SINE B4 -172 120 5 5 770 390 21 0 0 chr5 24262166 24262213 -128275046 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 770 618 186 53 79 chr5 24262716 24262868 -128274391 - B1_Mus1 SINE Alu 0 148 1 5 770 768 276 25 0 chr5 24262868 24263062 -128274197 - ID_B1 SINE B4 -10 214 16 5 770 1088 120 5 68 chr5 24264572 24264778 -128272481 + B2_Mm1a SINE B2 1 193 0 5 770 321 26 0 0 chr5 24264831 24264869 -128272390 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 770 306 268 57 97 chr5 24264924 24265048 -128272211 - B4A SINE B4 -131 161 43 5 770 506 143 0 0 chr5 24265086 24265163 -128272096 - RLTR19 LTR ERVK 0 499 423 6 770 307 282 86 31 chr5 24265169 24265297 -128271962 + MT2A LTR ERVL 211 345 -188 6 770 2118 139 63 40 chr5 24265288 24265686 -128271573 - RLTR19 LTR ERVK -92 407 1 6 770 318 50 0 0 chr5 24265691 24265731 -128271528 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 770 266 304 32 11 chr5 24265756 24265849 -128271410 - MT2A LTR ERVL -103 430 336 6 770 3160 39 180 2 chr5 24265927 24266360 -128270899 - RLTR1B LTR ERV1 -2 510 1 6 770 4077 21 0 0 chr5 24266360 24266841 -128270418 - MMERGLN-int LTR ERV1 0 7556 7076 6 770 216 0 0 0 chr5 24266841 24266865 -128270394 + (T)n Simple_repeat Simple_repeat 1 24 0 6 770 39776 4 0 1 chr5 24266888 24273649 -128263610 - L1Md_A LINE L1 0 6582 1 6 770 22829 37 0 1 chr5 24273650 24276382 -128260877 - MMERGLN-int LTR ERV1 -467 7089 4360 6 770 8717 4 0 1 chr5 24276389 24277673 -128259586 - L1Md_A LINE L1 0 6582 5300 6 770 36795 42 6 4 chr5 24277673 24282022 -128255237 - MMERGLN-int LTR ERV1 -3199 4357 1 6 770 3113 47 207 2 chr5 24282022 24282447 -128254812 - RLTR1B LTR ERV1 0 512 1 6 770 460 167 48 0 chr5 24282447 24282531 -128254728 - MTE2b LTR MaLR -286 93 6 6 770 605 142 9 0 chr5 24282611 24282724 -128254535 - B3A SINE B2 -28 170 57 6 770 561 125 0 0 chr5 24283066 24283154 -128254105 + (TC)n Simple_repeat Simple_repeat 2 89 0 6 770 280 180 92 8 chr5 24283534 24283627 -128253632 + PB1D10 SINE Alu 30 138 -11 6 770 774 158 131 28 chr5 24283773 24283949 -128253310 - B3 SINE B2 -21 195 2 6 770 1568 240 97 102 chr5 24284050 24285002 -128252257 + RMER17B LTR ERVK 5 951 -7 6 770 533 208 96 0 chr5 24285179 24285304 -128251955 - ID_B1 SINE B4 -1 223 87 6 770 252 87 65 0 chr5 24285308 24285354 -128251905 - L1MC LINE L1 -1892 5893 5845 6 770 563 134 219 0 chr5 24285354 24285473 -128251786 + B3A SINE B2 1 145 -53 6 770 237 228 53 0 chr5 24285526 24285583 -128251676 - L1MC LINE L1 -486 5847 5788 6 770 280 297 14 61 chr5 24285597 24285744 -128251515 - MLT1A1 LTR MaLR -2 406 267 6 770 1156 48 0 20 chr5 24286258 24286407 -128250852 - B1_Mus2 SINE Alu -1 146 1 6 770 389 157 0 14 chr5 24286506 24286577 -128250682 - B1_Mur1 SINE Alu -5 144 75 6 770 825 209 44 0 chr5 24286585 24286791 -128250468 - URR1B DNA MER1_type 0 225 11 6 770 270 287 84 8 chr5 24287052 24287205 -128250054 + MIRb SINE MIR 42 210 -58 6 770 216 176 20 0 chr5 24287248 24287299 -128249960 + PB1D9 SINE Alu 1 52 -68 6 770 397 245 64 0 chr5 24287297 24287391 -128249868 + B4A SINE B4 187 286 -6 6 770 276 30 0 0 chr5 24287425 24287458 -128249801 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 770 1203 75 0 0 chr5 24287610 24287757 -128249502 - B1_Mus1 SINE Alu 0 148 2 6 770 669 156 75 82 chr5 24287773 24287920 -128249339 - B1_Mus2 SINE Alu 0 147 2 6 770 295 147 324 18 chr5 24287933 24288044 -128249215 - B2_Mm2 SINE B2 0 195 51 6 770 1287 92 11 0 chr5 24288044 24288218 -128249041 - B2_Mm1t SINE B2 -14 179 4 6 770 423 208 34 2 chr5 24288232 24288339 -128248920 - B1_Mur4 SINE Alu 0 150 9 6 770 735 218 96 85 chr5 24288472 24288743 -128248516 - MTD LTR MaLR -145 274 1 6 770 448 207 9 35 chr5 24289421 24289536 -128247723 + ORR1D1 LTR MaLR 1 112 -262 6 770 839 28 0 0 chr5 24289530 24289638 -128247621 + B1_Mm SINE Alu 40 147 0 6 770 1298 156 15 52 chr5 24289643 24289913 -128247346 + ORR1D1 LTR MaLR 80 339 -35 6 770 1461 166 13 2 chr5 24289918 24290215 -128247044 + RMER6A LTR ERVK 1 306 -384 6 770 827 287 110 50 chr5 24290228 24290443 -128246816 - L1MA8 LINE L1 -224 6067 5854 6 770 2049 140 134 137 chr5 24290443 24290890 -128246369 + RLTR41 LTR ERV1 1 446 0 6 770 827 287 110 50 chr5 24290890 24291220 -128246039 - L1MA8 LINE L1 -438 5853 5489 6 770 1365 185 24 28 chr5 24291282 24291659 -128245600 + BGLII_B LTR ERVK 41 435 -6 6 770 1169 62 0 7 chr5 24291823 24291969 -128245290 + B1_Mus1 SINE Alu 2 146 -2 6 770 7572 72 43 5 chr5 24292230 24293308 -128243951 - MusHAL1 LINE L1 0 2712 1594 6 770 1199 48 0 0 chr5 24293310 24293456 -128243803 - B1_Mus2 SINE Alu -1 146 1 6 770 595 225 7 86 chr5 24294302 24294453 -128242806 + B1_Mur3 SINE Alu 1 139 -10 6 770 513 0 0 0 chr5 24294455 24294512 -128242747 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 770 702 82 0 0 chr5 24295437 24295535 -128241724 + (TTTC)n Simple_repeat Simple_repeat 1 98 0 6 770 203 61 0 29 chr5 24295541 24295575 -128241684 + (TATG)n Simple_repeat Simple_repeat 4 36 0 6 770 1187 46 0 0 chr5 24295575 24295728 -128241531 - B2_Mm2 SINE B2 -42 153 1 6 770 324 0 0 0 chr5 24295899 24295935 -128241324 + (TGG)n Simple_repeat Simple_repeat 2 37 0 6 770 1469 73 5 15 chr5 24296423 24296618 -128240641 + B2_Mm1a SINE B2 1 193 0 6 770 550 12 12 24 chr5 24297423 24297506 -128239753 + L1Md_F2 LINE L1 6501 6582 0 6 770 267 152 0 0 chr5 24297635 24297681 -128239578 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 770 1602 38 0 0 chr5 24297837 24298023 -128239236 - B2_Mm1a SINE B2 -6 187 2 6 770 631 250 7 20 chr5 24298086 24298233 -128239026 - B1_Mur1 SINE Alu -3 146 2 6 770 294 283 56 9 chr5 24299123 24299230 -128238029 - LTR31 LTR ERV1 -291 328 217 6 770 306 294 97 44 chr5 24299580 24299694 -128237565 - FordPrefect_a DNA Tip100 0 508 389 6 770 1365 86 0 6 chr5 24299761 24299936 -128237323 - B2_Mm2 SINE B2 -19 176 3 6 770 1463 172 103 73 chr5 24300060 24300133 -128237126 + ORR1B1 LTR MaLR 26 90 -304 6 770 4100 37 2 14 chr5 24300133 24300627 -128236632 + L1_Mus2 LINE L1 6079 6566 0 6 770 1463 172 103 73 chr5 24300627 24300911 -128236348 + ORR1B1 LTR MaLR 91 394 0 6 770 4897 188 55 55 chr5 24301447 24302588 -128234671 + MYSERV-int LTR ERVK 5385 6450 -100 6 770 1226 48 0 0 chr5 24302588 24302735 -128234524 - B1_Mm SINE Alu 0 147 1 6 770 4897 186 61 54 chr5 24302735 24302859 -128234400 + MYSERV-int LTR ERVK 6451 6548 -2 6 770 639 161 56 5 chr5 24302861 24302996 -128234263 + RLTR11A2 LTR ERVK 1 134 -319 6 770 439 210 123 25 chr5 24303365 24303487 -128233772 - B1_Mur1 SINE Alu -7 142 9 6 770 319 286 11 21 chr5 24304370 24304463 -128232796 + RSINE1 SINE B4 41 132 -33 6 770 1002 81 0 7 chr5 24305147 24305284 -128231975 + B1_Mus2 SINE Alu 1 136 -11 6 770 207 0 0 0 chr5 24305284 24305307 -128231952 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 770 1521 58 16 5 chr5 24305367 24305559 -128231700 + B2_Mm2 SINE B2 2 195 0 6 770 546 198 219 12 chr5 24306168 24306332 -128230927 + B3A SINE B2 1 198 0 6 770 727 174 20 14 chr5 24306441 24306587 -128230672 - B1_Mus2 SINE Alu 0 147 1 6 770 222 278 0 0 chr5 24307250 24307304 -128229955 + PB1D10 SINE Alu 63 116 -1 6 770 386 73 15 17 chr5 24307803 24307870 -128229389 - B2_Mm2 SINE B2 -82 116 45 6 770 918 117 188 0 chr5 24307878 24308032 -128229227 - B2_Mm2 SINE B2 -11 184 2 6 770 300 252 234 6 chr5 24308164 24308344 -128228915 - B4A SINE B4 -66 226 2 6 770 505 241 33 33 chr5 24308562 24308682 -128228577 + Lx8 LINE L1 6956 7075 -398 6 770 1097 68 7 20 chr5 24308831 24308980 -128228279 + B1_Mus1 SINE Alu 1 147 -1 6 770 804 37 9 0 chr5 24312170 24312277 -128224982 - B1_Mm SINE Alu 0 147 40 6 770 259 232 139 20 chr5 24313881 24313982 -128223277 - PB1D9 SINE Alu -5 115 3 6 770 910 67 15 0 chr5 24314722 24314856 -128222403 + B1_Mus2 SINE Alu 12 147 0 6 770 279 239 0 29 chr5 24315002 24315071 -128222188 + B4 SINE B4 11 77 -215 6 770 227 189 0 0 chr5 24315101 24315138 -128222121 - B1_Mus1 SINE Alu -110 38 2 6 770 257 67 42 62 chr5 24315158 24315206 -128222053 - B1F SINE Alu 0 149 103 6 770 308 133 0 77 chr5 24315163 24315228 -128222031 - ID_B1 SINE B4 -2 222 163 6 770 391 316 0 61 chr5 24315232 24315380 -128221879 + B4A SINE B4 153 291 -1 6 770 537 213 18 9 chr5 24315746 24315855 -128221404 - PB1D9 SINE Alu -8 112 3 6 770 1115 72 0 0 chr5 24315965 24316103 -128221156 - B1_Mus1 SINE Alu -9 139 2 6 770 522 207 24 40 chr5 24316128 24316254 -128221005 - ID_B1 SINE B4 -2 222 99 6 770 352 269 54 54 chr5 24316254 24316272 -128220987 - B1F2 SINE Alu 0 144 1 6 770 446 272 26 9 chr5 24316651 24316766 -128220493 - PB1D9 SINE Alu 0 120 4 6 770 591 251 83 1 chr5 24316882 24317082 -128220177 - B3A SINE B2 -3 213 1 6 770 394 232 85 0 chr5 24317272 24317354 -128219905 - PB1 SINE Alu -7 120 32 6 770 550 265 15 0 chr5 24317347 24317479 -128219780 + B3 SINE B2 82 215 -1 6 770 382 250 23 35 chr5 24318098 24318185 -128219074 - PB1D7 SINE Alu -31 89 4 6 770 834 174 115 13 chr5 24321069 24321368 -128215891 + RLTR20B2 LTR ERVK 3 560 0 6 770 255 250 171 0 chr5 24321505 24321593 -128215666 + PB1D10 SINE Alu 3 105 -12 6 770 361 72 14 68 chr5 24321865 24321939 -128215320 + B1_Mur4 SINE Alu 81 150 0 6 770 320 240 80 40 chr5 24323731 24323831 -128213428 + B3A SINE B2 9 112 -86 6 770 664 258 32 92 chr5 24324100 24324226 -128213033 + B3 SINE B2 2 121 -95 6 770 1714 91 225 15 chr5 24324226 24324493 -128212766 + ORR1A2 LTR MaLR 1 323 -4 6 770 664 258 32 92 chr5 24324493 24324584 -128212675 + B3 SINE B2 122 206 -10 6 770 3357 41 5 0 chr5 24324937 24325331 -128211928 + MTA_Mm LTR MaLR 1 396 0 6 770 1267 74 0 6 chr5 24325372 24325548 -128211711 - B2_Mm2 SINE B2 -20 175 1 6 770 222 37 0 0 chr5 24325673 24325700 -128211559 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 6 770 1396 104 77 51 chr5 24325715 24325988 -128211271 + ORR1A3 LTR MaLR 25 304 -22 6 770 627 14 0 0 chr5 24325988 24326060 -128211199 + (TCCA)n Simple_repeat Simple_repeat 3 74 0 6 770 843 158 14 7 chr5 24326063 24326203 -128211056 - B1_Mm SINE Alu -6 141 1 6 770 247 256 172 32 chr5 24326307 24326400 -128210859 - B1_Mm SINE Alu -33 114 9 7 770 245 130 0 0 chr5 24326435 24326481 -128210778 - B1_Mur4 SINE Alu -7 143 98 7 770 412 130 385 14 chr5 24326483 24326626 -128210633 - 7SK RNA RNA -84 247 52 7 770 216 86 0 0 chr5 24327718 24327753 -128209506 + (A)n Simple_repeat Simple_repeat 1 35 0 7 770 918 49 0 0 chr5 24328011 24328133 -128209126 + B1_Mus1 SINE Alu 27 148 0 7 770 536 196 0 51 chr5 24328209 24328327 -128208932 - B3 SINE B2 -102 114 3 7 770 324 70 0 0 chr5 24328343 24328386 -128208873 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 7 770 1164 75 7 0 chr5 24328392 24328539 -128208720 - B1_Mus1 SINE Alu 0 148 1 7 770 219 186 0 0 chr5 24328559 24328602 -128208657 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 7 770 672 240 0 7 chr5 24328722 24328869 -128208390 - RSINE1 SINE B4 -17 148 3 7 770 1276 224 182 13 chr5 24329326 24329428 -128207831 - Lx8 LINE L1 -133 7340 7238 7 770 213 39 0 0 chr5 24329428 24329454 -128207805 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 770 1276 224 182 13 chr5 24329454 24329740 -128207519 - Lx8 LINE L1 -236 7237 6886 7 770 233 325 0 13 chr5 24331069 24331147 -128206112 - ID4_ SINE ID -1 82 6 7 770 895 274 40 33 chr5 24333404 24333676 -128203583 + MTEa LTR MaLR 16 289 -90 7 770 380 246 31 31 chr5 24334032 24334162 -128203097 + Lx9 LINE L1 6320 6449 -1195 7 770 1203 35 14 0 chr5 24334163 24334308 -128202951 + B1_Mus2 SINE Alu 1 147 0 7 770 1996 172 96 3 chr5 24334324 24334709 -128202550 + Lx9 LINE L1 6504 6924 -720 7 770 400 221 13 0 chr5 24334726 24334803 -128202456 - RSINE1 SINE B4 -84 81 4 7 770 307 279 116 0 chr5 24335026 24335112 -128202147 - PB1D10 SINE Alu -21 96 1 7 770 711 230 46 7 chr5 24335146 24335299 -128201960 - ID_B1 SINE B4 -64 160 2 7 770 250 302 139 0 chr5 24335335 24335421 -128201838 - MIRc SINE MIR -33 235 138 7 770 198 276 67 33 chr5 24335669 24335729 -128201530 + L3b LINE CR1 344 405 -77 7 770 189 0 0 0 chr5 24335870 24335891 -128201368 + (A)n Simple_repeat Simple_repeat 1 21 0 7 770 312 267 80 0 chr5 24335940 24336015 -128201244 + RSINE1 SINE B4 73 153 -12 7 770 1154 75 7 0 chr5 24336313 24336460 -128200799 - B1_Mus1 SINE Alu 0 148 1 7 770 237 193 53 74 chr5 24336460 24336549 -128200710 + MER33 DNA MER1_type 146 233 -91 7 770 1147 146 34 34 chr5 24336700 24336906 -128200353 + URR1B DNA MER1_type 11 216 -9 7 770 713 326 57 47 chr5 24337342 24337641 -128199618 + MER58B DNA MER1_type 11 312 -29 7 770 255 124 0 100 chr5 24338278 24338342 -128198917 - L1_Mus3 LINE L1 -254 5629 5575 7 770 216 179 0 0 chr5 24338505 24338544 -128198715 + GA-rich Low_complexity Low_complexity 4 42 0 7 770 548 198 19 9 chr5 24338550 24338657 -128198602 - B1_Mur3 SINE Alu -36 113 6 7 770 448 283 8 40 chr5 24338774 24338899 -128198360 + RSINE1 SINE B4 2 122 -43 7 770 183 42 0 0 chr5 24338940 24338964 -128198295 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 770 715 207 0 0 chr5 24339348 24339469 -128197790 + B1_Mur2 SINE Alu 1 121 -28 7 770 386 316 66 22 chr5 24339469 24339484 -128197775 + ID_B1 SINE B4 82 223 -1 7 770 1473 64 5 0 chr5 24339681 24339868 -128197391 + B2_Mm1a SINE B2 2 189 -4 7 770 1186 30 0 0 chr5 24339877 24340012 -128197247 + B1_Mus1 SINE Alu 2 136 -12 7 770 512 267 115 32 chr5 24340766 24340983 -128196276 + Charlie1 DNA MER1_type 1442 1676 -1105 7 770 233 306 207 7 chr5 24340988 24341123 -128196136 + RSINE1 SINE B4 2 163 -2 7 770 269 281 190 17 chr5 24341170 24341344 -128195915 + Charlie1 DNA MER1_type 1672 1875 -906 7 770 320 232 145 12 chr5 24341375 24341458 -128195801 + PB1D7 SINE Alu 15 108 -12 7 770 219 373 13 0 chr5 24341572 24341647 -128195612 - ID2 SINE ID -7 76 1 7 770 225 319 0 52 chr5 24341647 24341734 -128195525 - ID_B1 SINE B4 -45 179 98 7 770 287 312 13 13 chr5 24341670 24341748 -128195511 - PB1D10 SINE Alu -38 79 2 7 770 627 219 201 6 chr5 24341795 24341974 -128195285 - B3 SINE B2 -2 214 1 7 770 1117 62 7 33 chr5 24342009 24342160 -128195099 - B1_Mus2 SINE Alu 0 147 1 7 770 381 269 99 75 chr5 24342174 24342237 -128195022 + Charlie1 DNA MER1_type 2006 2058 -723 7 770 374 200 130 28 chr5 24342237 24342345 -128194914 - PB1D9 SINE Alu 0 120 2 7 770 381 269 99 75 chr5 24342345 24342494 -128194765 + Charlie1 DNA MER1_type 2059 2223 -558 7 770 251 184 333 33 chr5 24342699 24342789 -128194470 + PB1D9 SINE Alu 1 117 -3 7 770 23 0 0 0 chr5 24342884 24342907 -128194352 + AT_rich Low_complexity Low_complexity 1 23 0 7 770 636 245 45 50 chr5 24342924 24343122 -128194137 + B3A SINE B2 1 197 -1 7 770 229 242 137 29 chr5 24343151 24343253 -128194006 + L1MB5 LINE L1 4595 4707 -1439 7 770 347 322 96 52 chr5 24343460 24343732 -128193527 + L1MB5 LINE L1 4951 5234 -912 7 770 622 234 176 13 chr5 24343743 24344136 -128193123 + L1MB5 LINE L1 5495 6033 -151 7 770 427 289 10 0 chr5 24344136 24344233 -128193026 + RSINE1 SINE B4 35 132 -33 7 770 1120 88 0 7 chr5 24344526 24344675 -128192584 - B1_Mus1 SINE Alu 0 148 1 7 770 342 0 0 0 chr5 24344694 24344732 -128192527 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 770 554 250 145 63 chr5 24344762 24345031 -128192228 - B4A SINE B4 0 292 2 7 770 788 116 18 0 chr5 24345251 24345363 -128191896 - PB1D9 SINE Alu -6 114 1 7 770 23 0 0 0 chr5 24347898 24347921 -128189338 + GC_rich Low_complexity Low_complexity 1 23 0 7 770 231 103 0 0 chr5 24348185 24348224 -128189035 + (CTCG)n Simple_repeat Simple_repeat 2 40 0 7 770 450 208 89 0 chr5 24349439 24349540 -128187719 - PB1D9 SINE Alu -2 118 9 7 770 353 247 68 194 chr5 24349540 24349630 -128187629 - ID_B1 SINE B4 -4 220 54 7 770 368 351 59 7 chr5 24349818 24349970 -128187289 + RSINE1 SINE B4 3 162 -3 7 770 348 161 0 0 chr5 24349970 24350032 -128187227 + (CTA)n Simple_repeat Simple_repeat 1 62 0 7 770 923 214 18 45 chr5 24350317 24350537 -128186722 + B3 SINE B2 1 214 -2 7 770 521 289 18 42 chr5 24351029 24351195 -128186064 - RSINE1 SINE B4 0 165 4 7 770 2208 151 3 30 chr5 24351449 24351812 -128185447 - ORR1B1 LTR MaLR 0 394 42 7 770 514 298 105 57 chr5 24352182 24352574 -128184685 + MLT1D LTR MaLR 3 500 -5 7 770 309 51 0 0 chr5 24353239 24353278 -128183981 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 770 868 134 75 0 chr5 24353286 24353420 -128183839 - B1_Mur4 SINE Alu -6 144 1 7 770 233 271 114 0 chr5 24353503 24353573 -128183686 - L1MC3 LINE L1 -580 7205 7128 7 770 316 299 219 8 chr5 24353681 24353831 -128183428 - L1MD2 LINE L1 -17 6342 6140 7 770 270 56 0 0 chr5 24353831 24353867 -128183392 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 770 316 299 219 8 chr5 24353867 24353976 -128183283 - L1MD2 LINE L1 -220 6139 6029 7 770 1970 142 16 3 chr5 24354185 24354490 -128182769 + RLTR27 LTR ERVK 1 309 0 7 770 325 311 115 83 chr5 24354647 24354864 -128182395 - L1M4 LINE L1 -2110 4036 3813 7 770 270 0 0 0 chr5 24354937 24354967 -128182292 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 770 524 93 31 10 chr5 24354967 24355064 -128182195 + (TA)n Simple_repeat Simple_repeat 1 100 0 7 770 225 287 57 47 chr5 24355095 24355201 -128182058 + RLTR14 LTR ERV1 263 369 -13 7 770 440 298 58 62 chr5 24355220 24355478 -128181781 + RLTR14-int LTR ERV1 2 258 -5059 7 770 1223 54 0 0 chr5 24355508 24355655 -128181604 + B1_Mus2 SINE Alu 1 147 0 7 770 264 120 0 0 chr5 24355669 24355719 -128181540 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 7 770 386 238 38 38 chr5 24356123 24356228 -128181031 + RLTR14-int LTR ERV1 447 551 -4766 7 770 330 326 30 52 chr5 24356267 24356497 -128180762 + RLTR14-int LTR ERV1 5092 5316 -1 7 770 703 283 116 89 chr5 24356498 24356870 -128180389 + RLTR14 LTR ERV1 1 382 0 7 770 357 268 95 42 chr5 24356875 24357159 -128180100 - L1MD LINE L1 -2991 3155 2857 7 770 224 325 252 23 chr5 24357280 24357812 -128179447 - L2 LINE L2 -951 2468 1815 7 770 225 0 0 0 chr5 24357971 24357996 -128179263 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 770 1121 37 30 0 chr5 24357996 24358131 -128179128 - B1_Mus1 SINE Alu -9 139 1 7 770 498 322 0 61 chr5 24358206 24358371 -128178888 - B3A SINE B2 -18 180 26 7 770 1152 223 0 0 chr5 24358423 24358634 -128178625 - B3 SINE B2 -5 211 1 7 770 1609 254 62 16 chr5 24358771 24359207 -128178052 - Lx8 LINE L1 -10 7463 7008 7 770 2022 202 77 54 chr5 24359302 24359729 -128177530 + RLTR20C LTR ERVK 1 432 -102 7 770 270 0 0 0 chr5 24359729 24359759 -128177500 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 770 2022 202 77 54 chr5 24359759 24359853 -128177406 + RLTR20C LTR ERVK 433 534 0 7 770 363 269 8 85 chr5 24359893 24360011 -128177248 + ID_B1 SINE B4 110 218 -6 7 770 1050 184 11 7 chr5 24360080 24360272 -128176987 + RMER13B LTR ERVK 1 185 -723 7 770 506 210 10 0 chr5 24360531 24360631 -128176628 - PB1D10 SINE Alu -2 115 15 7 770 298 244 38 12 chr5 24361808 24361912 -128175347 + Charlie2b DNA MER1_type 572 682 -2100 7 770 732 180 247 11 chr5 24361912 24362086 -128175173 - B3 SINE B2 -1 215 1 7 770 277 293 80 26 chr5 24362086 24362132 -128175127 + Charlie2b DNA MER1_type 683 730 -2052 7 770 469 322 92 26 chr5 24362143 24362490 -128174769 + L1M5 LINE L1 2617 2986 -3160 7 770 386 53 0 17 chr5 24362494 24362552 -128174707 + (TCC)n Simple_repeat Simple_repeat 3 59 0 7 770 1169 113 30 0 chr5 24362555 24362723 -128174536 - B2_Mm2 SINE B2 -18 177 5 7 770 1160 76 0 7 chr5 24362757 24362903 -128174356 + B1_Mus1 SINE Alu 2 146 -2 7 770 318 80 0 0 chr5 24362903 24362953 -128174306 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 7 770 348 278 18 44 chr5 24363055 24363168 -128174091 - PB1D10 SINE Alu -1 116 7 7 770 429 272 114 0 chr5 24363209 24363323 -128173936 - ID_B1 SINE B4 -3 221 95 7 770 581 149 0 9 chr5 24363491 24363606 -128173653 + GA-rich Low_complexity Low_complexity 3 116 0 7 770 914 181 0 32 chr5 24363678 24363832 -128173427 - B1_Mur4 SINE Alu -1 149 1 7 770 600 202 177 25 chr5 24363973 24364176 -128173083 + Lx8 LINE L1 7240 7473 0 7 770 356 279 144 0 chr5 24364319 24364423 -128172836 - PB1 SINE Alu -7 120 2 8 770 228 255 0 0 chr5 24364603 24364654 -128172605 - Tigger5 DNA MER2_type -2278 128 78 8 770 599 106 0 12 chr5 24364685 24364771 -128172488 - ORR1C1 LTR MaLR 0 378 294 8 770 1080 247 26 53 chr5 24364757 24365061 -128172198 + RLTR16 LTR ERVK 210 505 0 8 770 489 187 96 16 chr5 24365069 24365194 -128172065 - ORR1C1 LTR MaLR -243 135 1 8 770 903 133 22 0 chr5 24365206 24365341 -128171918 - B1_Mur1 SINE Alu -8 141 4 8 770 212 43 87 0 chr5 24365355 24365401 -128171858 + (TCTCC)n Simple_repeat Simple_repeat 4 53 0 8 770 180 0 0 0 chr5 24365420 24365440 -128171819 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 770 33 25 0 0 chr5 24365499 24365539 -128171720 + AT_rich Low_complexity Low_complexity 1 40 0 8 770 2159 135 105 5 chr5 24365797 24366178 -128171081 - MTC LTR MaLR 0 421 3 8 770 620 59 0 12 chr5 24366343 24366429 -128170830 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 8 770 656 261 117 22 chr5 24366620 24366894 -128170365 - MLT1C LTR MaLR -167 300 1 8 770 211 280 67 0 chr5 24366981 24367056 -128170203 + ID4 SINE ID 2 81 -2 8 770 784 259 48 26 chr5 24367082 24367291 -128169968 + ID_B1 SINE B4 1 223 -69 8 770 1167 93 12 0 chr5 24368397 24368558 -128168701 + B2_Mm2 SINE B2 2 164 -31 8 770 478 204 24 12 chr5 24370101 24370240 -128167019 - B3 SINE B2 -9 207 1 8 770 591 160 0 0 chr5 24370320 24370414 -128166845 - B1_Mur3 SINE Alu -38 111 18 8 770 1508 109 82 31 chr5 24370600 24370856 -128166403 - Lx3_Mus LINE L1 0 7009 6741 8 770 1319 51 0 6 chr5 24371299 24371476 -128165783 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 8 770 565 78 0 0 chr5 24371476 24371553 -128165706 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 8 770 939 179 0 0 chr5 24371553 24371732 -128165527 + (CCTA)n Simple_repeat Simple_repeat 2 180 0 8 770 422 327 9 0 chr5 24371736 24371849 -128165410 - PB1D9 SINE Alu 0 120 7 8 770 261 0 0 0 chr5 24371865 24371894 -128165365 + (T)n Simple_repeat Simple_repeat 1 29 0 8 770 207 0 0 0 chr5 24372056 24372079 -128165180 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 770 508 300 134 40 chr5 24372099 24372152 -128165107 - B4A SINE B4 -14 278 229 8 770 1197 192 9 0 chr5 24372152 24372365 -128164894 - B3 SINE B2 0 216 2 8 770 508 300 134 40 chr5 24372365 24372564 -128164695 - B4A SINE B4 -64 228 2 8 770 552 15 0 0 chr5 24374301 24374366 -128162893 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 770 217 231 0 0 chr5 24374383 24374435 -128162824 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 770 356 122 0 0 chr5 24374448 24374497 -128162762 + HAL1-3A_ME LINE L1 1970 2018 -840 8 770 315 0 0 0 chr5 24374505 24374540 -128162719 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 770 295 292 28 0 chr5 24375305 24375377 -128161882 - ID4_ SINE ID -9 74 1 8 770 447 310 63 25 chr5 24375473 24375632 -128161627 - B3A SINE B2 -16 182 18 8 770 444 35 0 17 chr5 24375677 24375735 -128161524 + RLTR17 LTR ERVK 98 154 -538 8 770 1150 153 51 28 chr5 24375726 24375941 -128161318 + RLTR17 LTR ERVK 473 692 0 8 770 803 78 0 8 chr5 24376964 24377081 -128160178 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 8 771 450 224 32 57 chr5 24380670 24380793 -128156466 - B1F SINE Alu -19 130 11 8 771 384 248 7 94 chr5 24380793 24380808 -128156451 - ID_B1 SINE B4 -19 205 80 8 771 445 268 179 24 chr5 24382158 24382410 -128154849 - B4 SINE B4 0 292 2 8 771 22 35 0 0 chr5 24383151 24383180 -128154079 + AT_rich Low_complexity Low_complexity 1 29 0 8 771 343 247 22 0 chr5 24383998 24384087 -128153172 + BC1_Mm scRNA scRNA 1 91 -61 8 771 565 327 111 8 chr5 24384617 24384870 -128152389 + B4A SINE B4 1 279 -13 8 771 205 154 19 37 chr5 24384878 24384932 -128152327 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 8 771 314 122 29 39 chr5 24384982 24385084 -128152175 + (CA)n Simple_repeat Simple_repeat 1 101 0 8 771 210 283 0 0 chr5 24385133 24385225 -128152034 + (CA)n Simple_repeat Simple_repeat 1 92 0 8 771 490 189 74 0 chr5 24385944 24386039 -128151220 - PB1D10 SINE Alu -13 104 3 8 771 180 0 0 0 chr5 24386339 24386359 -128150900 + (GTCTG)n Simple_repeat Simple_repeat 3 22 0 8 771 1860 72 326 0 chr5 24386709 24387016 -128150243 - MTB_Mm LTR MaLR 0 407 1 8 771 306 229 70 40 chr5 24387080 24387180 -128150079 + RMER30 DNA MER1_type 7 109 -93 8 771 405 0 0 0 chr5 24387203 24387248 -128150011 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 771 477 327 45 79 chr5 24387250 24387542 -128149717 - B4 SINE B4 -9 283 2 8 771 355 323 0 39 chr5 24387542 24387644 -128149615 + RMER30 DNA MER1_type 104 201 -1 8 771 27 0 0 0 chr5 24388039 24388066 -128149193 + AT_rich Low_complexity Low_complexity 1 27 0 8 771 374 244 16 26 chr5 24388237 24388344 -128148915 - PB1D10 SINE Alu -6 143 40 8 771 744 238 11 75 chr5 24388365 24388586 -128148673 + MTC LTR MaLR 187 421 0 8 771 694 201 36 7 chr5 24389174 24389314 -128147945 - B1F2 SINE Alu -3 146 3 8 771 4014 26 30 2 chr5 24389462 24389924 -128147335 + MT2C_Mm LTR ERVL 1 475 0 8 771 1678 113 12 12 chr5 24389926 24390185 -128147074 + MTA_Mm-int LTR MaLR 1 259 -839 8 771 1844 48 18 18 chr5 24390156 24390434 -128146825 + MTA_Mm-int LTR MaLR 821 1098 0 8 771 1868 48 342 0 chr5 24390434 24390729 -128146530 + MTA_Mm LTR MaLR 1 396 0 8 771 535 255 9 0 chr5 24392728 24392834 -128144425 - ID_B1 SINE B4 -31 193 87 8 771 643 214 0 16 chr5 24392855 24392983 -128144276 - B1_Mus1 SINE Alu -5 143 18 8 771 277 238 80 109 chr5 24392877 24393014 -128144245 - MT2B LTR ERVL -323 278 146 8 771 823 227 13 0 chr5 24396505 24396655 -128140604 - B3A SINE B2 -39 159 8 8 771 373 314 47 47 chr5 24396693 24396820 -128140439 - MTEa LTR MaLR -252 127 1 8 771 379 246 25 46 chr5 24396820 24396935 -128140324 + RSINE1 SINE B4 2 113 -179 8 771 578 278 42 130 chr5 24397043 24397209 -128140050 + RLTR15 LTR ERVK 1 150 -209 8 771 1244 41 7 0 chr5 24397209 24397354 -128139905 + B1_Mm SINE Alu 1 146 -1 8 771 578 278 42 130 chr5 24397354 24397564 -128139695 + RLTR15 LTR ERVK 151 344 -15 8 771 304 300 116 97 chr5 24397988 24398350 -128138909 + MLT1C LTR MaLR 48 416 -51 8 771 218 197 149 15 chr5 24398725 24398792 -128138467 + RSINE1 SINE B4 69 144 -21 8 771 518 79 13 0 chr5 24399082 24399158 -128138101 + (CCTA)n Simple_repeat Simple_repeat 1 77 0 8 771 763 280 115 75 chr5 24399181 24399459 -128137800 - B4A SINE B4 0 292 4 8 771 406 292 147 12 chr5 24399812 24400067 -128137192 + MTEa LTR MaLR 17 304 -75 8 771 223 282 114 11 chr5 24401099 24401257 -128136002 - MIRc SINE MIR -28 234 61 8 771 292 284 11 11 chr5 24401824 24401913 -128135346 + CT-rich Low_complexity Low_complexity 1 89 0 8 771 601 310 71 22 chr5 24401924 24402191 -128135068 - MER21B LTR ERV1 -58 805 526 8 771 803 325 69 25 chr5 24402259 24402578 -128134681 - MER21B LTR ERV1 -496 367 35 8 771 903 59 8 0 chr5 24402550 24402669 -128134590 + B1_Mus1 SINE Alu 29 148 0 8 771 412 265 95 7 chr5 24402789 24402926 -128134333 - B1F SINE Alu 0 149 1 8 771 384 319 14 36 chr5 24402802 24402942 -128134317 - ID_B1 SINE B4 -20 204 68 8 771 3475 25 2 8 chr5 24403863 24404261 -128132998 + MTA_Mm LTR MaLR 1 396 0 8 771 8060 62 9 69 chr5 24404261 24405429 -128131830 + MTA_Mm-int LTR MaLR 1 1097 -1 8 771 3049 33 3 0 chr5 24405437 24405800 -128131459 + MTA_Mm LTR MaLR 33 396 0 8 771 288 0 0 0 chr5 24405979 24406011 -128131248 + (GA)n Simple_repeat Simple_repeat 1 32 0 8 771 183 42 0 0 chr5 24406147 24406171 -128131088 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 8 771 1337 172 203 19 chr5 24406347 24406667 -128130592 + MTD LTR MaLR 1 379 -40 8 771 997 69 54 0 chr5 24407529 24407659 -128129600 - B1_Mus1 SINE Alu -11 137 1 8 771 474 308 24 30 chr5 24408947 24409111 -128128148 - MER106A DNA MER1_type -68 168 6 8 771 375 127 0 0 chr5 24409122 24409185 -128128074 + (T)n Simple_repeat Simple_repeat 1 63 0 8 771 936 276 27 55 chr5 24409495 24409752 -128127507 - B4A SINE B4 0 292 43 8 771 243 79 0 0 chr5 24409762 24409800 -128127459 + (T)n Simple_repeat Simple_repeat 1 38 0 8 771 1744 209 63 35 chr5 24409800 24410196 -128127063 + MTD LTR MaLR 13 419 0 8 771 187 220 47 78 chr5 24410679 24410743 -128126516 - L4 LINE RTE -948 1081 1020 8 771 31 26 0 0 chr5 24414292 24414330 -128122929 + GC_rich Low_complexity Low_complexity 1 38 0 8 771 180 0 0 0 chr5 24414645 24414665 -128122594 + (C)n Simple_repeat Simple_repeat 1 20 0 8 771 651 201 274 0 chr5 24415259 24415423 -128121836 + B3 SINE B2 4 212 -4 8 771 444 335 129 20 chr5 24415497 24415953 -128121306 + L1MD2 LINE L1 4178 4683 -1463 8 771 243 252 252 75 chr5 24415999 24416158 -128121101 + B3A SINE B2 2 188 -10 8 771 863 159 0 7 chr5 24416162 24416301 -128120958 + B1_Mur3 SINE Alu 2 139 -10 8 771 418 251 280 32 chr5 24416377 24416906 -128120353 + L1MD2 LINE L1 4731 5391 -755 8 771 439 297 102 88 chr5 24416939 24417044 -128120215 + L1MD2 LINE L1 5450 5554 -805 8 771 678 260 81 86 chr5 24417044 24417242 -128120017 + B3A SINE B2 2 198 0 8 771 439 297 102 88 chr5 24417242 24417535 -128119724 + L1MD2 LINE L1 5555 5844 -515 8 771 864 215 0 0 chr5 24417535 24417679 -128119580 + B1_Mur1 SINE Alu 1 144 -5 8 771 439 297 102 88 chr5 24417679 24417781 -128119478 + L1MD2 LINE L1 5845 5958 -401 8 771 608 233 100 67 chr5 24418041 24418280 -128118979 - L1M4 LINE L1 -356 5822 5576 8 771 601 251 101 20 chr5 24418512 24418711 -128118548 - B3 SINE B2 -1 215 1 8 771 300 230 43 65 chr5 24419934 24419985 -128117274 - RMER30 DNA MER1_type -47 155 103 8 771 460 208 135 23 chr5 24419985 24420118 -128117141 - B1_Mur1 SINE Alu -1 148 1 8 771 300 230 43 65 chr5 24420118 24420159 -128117100 - RMER30 DNA MER1_type -100 102 65 8 771 1514 188 138 37 chr5 24420352 24420701 -128116558 + ORR1C2 LTR MaLR 1 384 0 8 771 672 239 36 47 chr5 24420795 24420835 -128116424 + B3A SINE B2 7 42 -156 8 771 2214 120 98 0 chr5 24420835 24421194 -128116065 - ORR1B1 LTR MaLR 0 394 1 8 771 672 239 36 47 chr5 24421194 24421346 -128115913 + B3A SINE B2 43 197 -1 8 771 287 168 0 0 chr5 24421375 24421424 -128115835 + PB1D9 SINE Alu 47 96 -54 8 771 429 70 0 0 chr5 24421499 24421556 -128115703 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 771 715 156 45 38 chr5 24421558 24421691 -128115568 - B1_Mur4 SINE Alu -1 149 16 9 771 192 97 0 0 chr5 24421693 24421724 -128115535 + (T)n Simple_repeat Simple_repeat 1 31 0 9 771 1073 84 7 0 chr5 24421724 24421867 -128115392 - B1_Mus1 SINE Alu 0 148 5 9 771 1018 252 35 18 chr5 24421870 24422096 -128115163 - B4A SINE B4 -62 230 1 9 771 409 271 40 24 chr5 24422121 24422246 -128115013 + PB1 SINE Alu 1 127 0 9 771 226 288 27 0 chr5 24422258 24422331 -128114928 - L1_Rod LINE L1 -645 5202 5128 9 771 387 322 89 52 chr5 24422392 24422703 -128114556 + MTEa LTR MaLR 2 342 -37 9 771 208 28 83 0 chr5 24422850 24422886 -128114373 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 9 771 675 216 50 67 chr5 24423005 24423184 -128114075 + MTD LTR MaLR 12 187 -232 9 771 1167 286 52 11 chr5 24423200 24423564 -128113695 + MTE2b LTR MaLR 1 379 0 9 771 804 216 80 30 chr5 24424214 24424414 -128112845 - B3 SINE B2 -6 210 1 9 771 199 157 19 19 chr5 24424421 24424473 -128112786 + CT-rich Low_complexity Low_complexity 1 52 0 9 771 583 200 24 40 chr5 24424504 24424629 -128112630 - B1F SINE Alu -5 144 22 9 771 583 197 105 77 chr5 24424656 24424788 -128112471 + B1_Mur4 SINE Alu 1 137 -13 9 771 342 0 0 0 chr5 24424788 24424826 -128112433 + (CAA)n Simple_repeat Simple_repeat 1 38 0 9 771 291 54 0 0 chr5 24424957 24424994 -128112265 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 771 307 357 52 57 chr5 24425317 24425510 -128111749 + MLT1L LTR MaLR 418 609 -1 9 771 346 309 144 0 chr5 24425754 24425893 -128111366 - RSINE1 SINE B4 -6 159 1 9 771 396 0 0 0 chr5 24426339 24426383 -128110876 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 771 416 296 80 15 chr5 24426689 24426826 -128110433 - B1F2 SINE Alu -3 146 1 9 771 318 253 152 9 chr5 24427131 24427293 -128109966 + MTC LTR MaLR 1 211 -210 9 771 301 216 57 16 chr5 24427331 24427421 -128109838 + MTC LTR MaLR 286 419 0 9 771 1208 241 59 20 chr5 24427525 24427830 -128109429 + MTE2a LTR MaLR 1 317 -62 9 771 1157 289 49 13 chr5 24427866 24428252 -128109007 + MTE-int LTR MaLR 2 401 -1179 9 771 1165 44 0 0 chr5 24428790 24428925 -128108334 + B1_Mm SINE Alu 1 135 -12 9 771 315 0 0 0 chr5 24428926 24428961 -128108298 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 771 520 307 63 41 chr5 24429022 24429290 -128107969 + Charlie1a DNA MER1_type 933 1206 -249 9 771 390 169 0 0 chr5 24429290 24429349 -128107910 + RSINE1 SINE B4 11 69 -96 9 771 330 212 15 0 chr5 24429578 24429644 -128107615 - B3A SINE B2 -129 69 3 9 771 765 189 0 0 chr5 24429651 24429778 -128107481 - B1_Mur1 SINE Alu -22 127 1 9 771 226 257 40 79 chr5 24429778 24429836 -128107423 - ORR1B1-int LTR MaLR -864 645 594 9 771 22 56 0 0 chr5 24429936 24429972 -128107287 + AT_rich Low_complexity Low_complexity 1 36 0 9 771 440 191 40 0 chr5 24430347 24430520 -128106739 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 771 419 195 42 2 chr5 24430538 24430949 -128106310 + (TG)n Simple_repeat Simple_repeat 1 427 0 9 771 360 228 38 4 chr5 24430960 24431230 -128106029 + (TG)n Simple_repeat Simple_repeat 1 279 0 9 771 297 306 91 30 chr5 24431248 24431413 -128105846 - B4A SINE B4 -3 289 115 9 771 763 278 65 29 chr5 24431739 24432017 -128105242 - B4 SINE B4 -4 288 1 9 771 1074 145 43 0 chr5 24432415 24432601 -128104658 - B2_Mm2 SINE B2 -1 194 1 9 771 22 0 0 0 chr5 24432608 24432630 -128104629 + AT_rich Low_complexity Low_complexity 1 22 0 9 771 233 342 0 40 chr5 24432711 24432731 -128104528 - ID_B1 SINE B4 -114 110 38 9 771 249 198 0 54 chr5 24432731 24432787 -128104472 - ID4_ SINE ID -60 92 37 9 771 307 268 42 0 chr5 24433255 24433326 -128103933 - ID4 SINE ID -8 75 2 9 771 22 0 0 0 chr5 24433336 24433358 -128103901 + AT_rich Low_complexity Low_complexity 1 22 0 9 771 1583 218 81 25 chr5 24434351 24434747 -128102512 + MTD LTR MaLR 2 419 0 9 771 1173 218 9 0 chr5 24434773 24434984 -128102275 + B3 SINE B2 3 215 -1 9 771 596 224 81 50 chr5 24435049 24435209 -128102050 - RSINE1 SINE B4 0 165 1 9 771 749 191 151 16 chr5 24435337 24435523 -128101736 + B3 SINE B2 1 211 -5 9 771 537 272 19 184 chr5 24436375 24436474 -128100785 - ID_B1 SINE B4 -3 221 153 9 771 763 174 21 42 chr5 24436474 24436618 -128100641 - B1_Mur2 SINE Alu -7 142 2 9 771 537 272 19 184 chr5 24436618 24436779 -128100480 - ID_B1 SINE B4 -72 152 4 9 771 390 42 0 0 chr5 24436905 24436953 -128100306 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 771 498 226 19 158 chr5 24437908 24438066 -128099193 + ID_B1 SINE B4 1 136 -88 9 771 311 232 113 21 chr5 24438352 24438449 -128098810 + RLTR25B LTR ERVK 404 509 -519 9 771 756 61 0 10 chr5 24438383 24438483 -128098776 + B1_Mus2 SINE Alu 40 138 -9 9 771 255 69 16 49 chr5 24438605 24438666 -128098593 + (CAA)n Simple_repeat Simple_repeat 2 60 0 9 771 288 0 0 0 chr5 24438889 24438921 -128098338 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 9 771 419 129 30 55 chr5 24438931 24439095 -128098164 + (TCTA)n Simple_repeat Simple_repeat 2 161 0 9 771 786 199 91 30 chr5 24439707 24439904 -128097355 - B3 SINE B2 -6 210 2 9 771 397 221 94 10 chr5 24439924 24440020 -128097239 - PB1D10 SINE Alu -13 104 1 9 771 537 301 45 0 chr5 24440074 24440207 -128097052 - RSINE1 SINE B4 -1 164 26 9 771 1059 67 24 6 chr5 24440221 24440386 -128096873 + (TCTA)n Simple_repeat Simple_repeat 3 170 0 9 771 902 128 0 113 chr5 24440411 24440451 -128096808 - B1_Mur3 SINE Alu 0 149 115 9 771 3016 70 36 0 chr5 24440451 24440837 -128096422 + MTB LTR MaLR 1 400 0 9 771 902 128 0 113 chr5 24440837 24440964 -128096295 - B1_Mur3 SINE Alu -35 114 1 9 771 458 306 49 31 chr5 24440964 24441017 -128096242 - B4 SINE B4 -203 89 34 9 771 231 114 0 0 chr5 24441918 24441953 -128095306 + (TAA)n Simple_repeat Simple_repeat 2 36 0 9 771 237 302 87 56 chr5 24441980 24442106 -128095153 + RMER15 LTR ERVL 27 156 -419 9 771 420 260 36 108 chr5 24442130 24442324 -128094935 + RMER15 LTR ERVL 380 559 -16 9 771 599 293 114 27 chr5 24442761 24443024 -128094235 - B4A SINE B4 -6 286 1 9 771 231 42 40 40 chr5 24443090 24443140 -128094119 + (CAAAAA)n Simple_repeat Simple_repeat 6 55 0 9 771 319 368 70 52 chr5 24443162 24443449 -128093810 - ORR1E LTR MaLR -67 292 1 9 771 1192 60 12 12 chr5 24444544 24444714 -128092545 + (TTCTCC)n Simple_repeat Simple_repeat 3 172 0 9 771 198 167 0 0 chr5 24444715 24444751 -128092508 + C-rich Low_complexity Low_complexity 5 40 0 9 771 605 183 0 8 chr5 24444980 24445229 -128092030 + (CA)n Simple_repeat Simple_repeat 1 246 0 9 771 759 258 18 13 chr5 24445260 24445488 -128091771 - L1MA4A LINE L1 -397 5906 5678 9 771 259 256 8 8 chr5 24446266 24446384 -128090875 + GA-rich Low_complexity Low_complexity 1 118 0 9 771 589 239 149 21 chr5 24446956 24447144 -128090115 + ID_B1 SINE B4 6 217 -7 9 771 276 301 57 19 chr5 24447145 24447250 -128090009 - L1MA5 LINE L1 -4 6296 6188 9 771 988 287 67 0 chr5 24447281 24447549 -128089710 + B4A SINE B4 4 289 -3 9 771 318 183 0 0 chr5 24447557 24447628 -128089631 + (CA)n Simple_repeat Simple_repeat 2 72 0 9 771 256 281 121 36 chr5 24448022 24448188 -128089071 + MLT1B LTR MaLR 108 287 -103 9 771 212 233 0 0 chr5 24448451 24448494 -128088765 + ID4_ SINE ID 5 47 -36 9 771 186 133 0 0 chr5 24448495 24448525 -128088734 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 771 597 318 39 58 chr5 24448551 24448808 -128088451 + MTD LTR MaLR 13 264 -155 9 771 654 291 31 62 chr5 24449720 24449947 -128087312 - ID_B1 SINE B4 -2 222 3 9 771 198 138 17 33 chr5 24450442 24450502 -128086757 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 771 804 306 10 77 chr5 24450502 24450814 -128086445 - B4A SINE B4 0 292 2 9 771 372 257 71 29 chr5 24451063 24451203 -128086056 + RSINE1 SINE B4 1 146 -19 9 771 26 0 0 0 chr5 24451224 24451250 -128086009 + AT_rich Low_complexity Low_complexity 1 26 0 9 771 431 318 40 7 chr5 24451254 24451403 -128085856 - L1MB1 LINE L1 -169 5999 5846 9 771 551 318 31 5 chr5 24451749 24451945 -128085314 + MLT1B LTR MaLR 1 201 -189 9 771 366 338 101 72 chr5 24452140 24452446 -128084813 + MER2 DNA MER2_type 9 323 -22 9 771 645 147 29 0 chr5 24452791 24452927 -128084332 + CT-rich Low_complexity Low_complexity 1 140 0 9 771 641 196 70 63 chr5 24453909 24453960 -128083299 + B4 SINE B4 27 78 -214 9 771 253 289 15 123 chr5 24453960 24454090 -128083169 + B1_Mur4 SINE Alu 1 116 -34 9 771 280 292 0 14 chr5 24454168 24454241 -128083018 - ID_B1 SINE B4 -67 157 86 9 771 314 212 0 0 chr5 24454185 24454244 -128083015 - PB1D9 SINE Alu -89 60 2 9 771 376 317 54 11 chr5 24454244 24454418 -128082841 - MLT1C LTR MaLR -285 182 1 9 771 511 188 0 30 chr5 24454458 24454543 -128082716 + B1_Mur1 SINE Alu 54 138 -11 9 771 225 65 0 0 chr5 24454543 24454574 -128082685 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 771 511 188 0 30 chr5 24454574 24454587 -128082672 + B1_Mur1 SINE Alu 139 149 0 9 771 252 0 0 0 chr5 24454590 24454618 -128082641 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 771 367 159 0 0 chr5 24454783 24454846 -128082413 - ID_B1 SINE B4 0 224 162 9 771 271 216 40 26 chr5 24454846 24454857 -128082402 - PB1D10 SINE Alu 0 115 41 9 771 601 230 89 84 chr5 24455384 24455598 -128081661 + B4 SINE B4 9 223 -69 9 771 1234 184 198 10 chr5 24456254 24456567 -128080692 + MTEb LTR MaLR 2 373 -6 9 771 288 0 0 0 chr5 24457063 24457095 -128080164 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 771 281 382 66 57 chr5 24457264 24457614 -128079645 - ORR1E LTR MaLR 0 359 7 1 771 616 289 19 13 chr5 24458422 24458580 -128078679 + RMER30 DNA MER1_type 5 163 -39 1 771 802 270 30 5 chr5 24459798 24459999 -128077260 + ID_B1 SINE B4 12 217 -7 1 771 436 258 93 0 chr5 24460433 24460584 -128076675 + Charlie1b DNA MER1_type 318 482 -41 1 771 21 0 0 0 chr5 24460609 24460630 -128076629 + AT_rich Low_complexity Low_complexity 1 21 0 1 771 571 291 77 6 chr5 24461637 24461820 -128075439 + B4 SINE B4 11 206 -86 1 771 1574 196 63 54 chr5 24461911 24462105 -128075154 - MTD LTR MaLR 0 419 207 1 771 2904 61 0 0 chr5 24462105 24462451 -128074808 + ORR1A1 LTR MaLR 1 346 0 1 771 1574 196 63 54 chr5 24462451 24462666 -128074593 - MTD LTR MaLR -213 206 6 1 771 1113 68 0 58 chr5 24463220 24463376 -128073883 + B1_Mm SINE Alu 1 147 0 1 771 215 122 0 20 chr5 24463377 24463427 -128073832 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 1 771 514 293 7 43 chr5 24463865 24464004 -128073255 - B4 SINE B4 -156 136 3 1 771 502 263 68 56 chr5 24464037 24464198 -128073061 - RSINE1 SINE B4 0 165 3 1 771 360 0 0 0 chr5 24465127 24465167 -128072092 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 771 249 33 0 0 chr5 24465167 24465196 -128072063 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 771 296 256 103 0 chr5 24465203 24465281 -128071978 - ID_B1 SINE B4 -21 203 118 1 771 657 291 85 54 chr5 24465665 24465981 -128071278 - ORR1E LTR MaLR -2 357 32 1 771 772 242 68 14 chr5 24466182 24466382 -128070877 - B3 SINE B2 -5 190 1 1 771 340 236 0 0 chr5 24467820 24467892 -128069367 - ID4 SINE ID -10 73 2 1 771 315 165 80 34 chr5 24468159 24468247 -128069012 + L1M4 LINE L1 5188 5279 -867 1 771 702 233 48 5 chr5 24468271 24468430 -128068829 + B3A SINE B2 2 159 -39 1 771 423 0 0 0 chr5 24468430 24468477 -128068782 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 771 393 257 68 100 chr5 24468477 24468507 -128068752 + B2_Mm2 SINE B2 152 185 -10 1 771 1023 170 113 0 chr5 24468650 24468844 -128068415 + RMER1B Other Other 47 262 -804 1 771 1633 175 44 9 chr5 24468833 24469150 -128068109 + RMER1B Other Other 739 1066 0 1 771 3430 40 2 2 chr5 24470857 24471253 -128066006 + MTA_Mm LTR MaLR 1 396 0 1 771 955 199 181 12 chr5 24472880 24473129 -128064130 - B4A SINE B4 -1 291 1 1 771 875 179 97 0 chr5 24473501 24473696 -128063563 + Lx5 LINE L1 6833 7046 -4 1 771 582 93 0 0 chr5 24475008 24475094 -128062165 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 771 315 0 0 0 chr5 24480215 24480250 -128057009 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 1 771 1385 85 6 0 chr5 24480258 24480435 -128056824 - B2_Mm1a SINE B2 -15 178 1 1 771 288 130 0 0 chr5 24480761 24480807 -128056452 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 1 771 601 219 186 47 chr5 24481326 24481498 -128055761 + B3A SINE B2 2 197 -1 1 771 450 36 0 0 chr5 24481587 24481643 -128055616 + (TCCC)n Simple_repeat Simple_repeat 4 59 0 1 771 369 132 63 38 chr5 24481741 24481820 -128055439 - B3 SINE B2 -11 205 125 1 771 485 258 23 15 chr5 24481988 24482118 -128055141 + RSINE1 SINE B4 2 132 -33 1 771 428 309 36 7 chr5 24483664 24483804 -128053455 - B4A SINE B4 -4 288 145 1 771 422 263 61 74 chr5 24484986 24485134 -128052125 - B1F SINE Alu 0 149 4 1 771 243 304 18 64 chr5 24485562 24485671 -128051588 - PB1 SINE Alu -3 124 21 1 771 528 207 34 8 chr5 24486001 24486118 -128051141 + RSINE1 SINE B4 14 133 -32 1 771 234 227 13 13 chr5 24486149 24486225 -128051034 + A-rich Low_complexity Low_complexity 5 80 0 1 771 857 246 147 50 chr5 24486345 24486747 -128050512 + RMER10A LTR ERVL 2 442 0 1 771 603 306 88 5 chr5 24487047 24487264 -128049995 - B4 SINE B4 0 292 58 1 771 265 267 53 0 chr5 24487850 24487925 -128049334 + ID4 SINE ID 1 79 -4 1 771 383 308 43 43 chr5 24488433 24488596 -128048663 - ERVL-E-int LTR ERVL -3813 1854 1692 1 771 863 277 79 20 chr5 24488694 24488948 -128048311 - B4 SINE B4 -20 272 4 1 771 315 283 138 50 chr5 24489945 24490184 -128047075 + L1MB3 LINE L1 5895 6153 -30 1 771 357 234 0 37 chr5 24490239 24490403 -128046856 + GA-rich Low_complexity Low_complexity 3 160 0 1 771 279 0 0 0 chr5 24490655 24490686 -128046573 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 771 724 244 119 0 chr5 24491970 24492163 -128045096 - ID_B1 SINE B4 -6 218 3 1 771 601 286 72 34 chr5 24492411 24492704 -128044555 - MER74A LTR ERVL 0 558 255 1 771 1047 139 0 0 chr5 24493231 24493411 -128043848 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 771 2153 146 29 57 chr5 24493411 24493796 -128043463 + ORR1C1 LTR MaLR 5 378 0 1 771 570 126 11 0 chr5 24493829 24493924 -128043335 + ORR1D1 LTR MaLR 1 96 -278 1 771 387 171 40 0 chr5 24493922 24494008 -128043251 + ORR1D1 LTR MaLR 240 378 0 1 771 207 0 0 0 chr5 24494040 24494063 -128043196 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 1 771 2301 144 59 22 chr5 24494097 24494501 -128042758 + MTD LTR MaLR 1 419 0 1 771 240 178 27 14 chr5 24494528 24494602 -128042657 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 1 771 219 146 0 0 chr5 24496193 24496234 -128041025 + (TCC)n Simple_repeat Simple_repeat 2 42 0 1 771 307 301 0 109 chr5 24496637 24496682 -128040577 + L1MB3 LINE L1 5879 5922 -261 1 771 507 259 190 12 chr5 24496682 24496924 -128040335 - B4A SINE B4 -6 286 2 1 771 307 301 0 109 chr5 24496924 24497016 -128040243 + L1MB3 LINE L1 5923 6001 -182 1 771 306 0 0 0 chr5 24497410 24497444 -128039815 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 771 379 166 55 45 chr5 24498424 24498522 -128038737 + MTC LTR MaLR 1 98 -298 1 771 887 124 0 20 chr5 24498525 24498673 -128038586 + B1_Mur4 SINE Alu 6 150 0 1 771 1759 136 93 10 chr5 24498677 24498990 -128038269 + MTC LTR MaLR 83 421 0 1 771 1124 197 33 0 chr5 24500169 24500382 -128036877 - ID_B1 SINE B4 -4 220 1 1 771 362 336 35 34 chr5 24502024 24502171 -128035088 - MIR3 SINE MIR -35 173 28 2 771 189 74 0 0 chr5 24502240 24502267 -128034992 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 771 686 190 5 107 chr5 24502402 24502608 -128034651 + B3A SINE B2 2 186 -12 4 771 355 254 79 39 chr5 24503096 24503223 -128034036 + ORR1E LTR MaLR 49 180 -179 5 771 260 193 82 42 chr5 24503769 24503865 -128033394 + PB1D10 SINE Alu 10 117 0 6 771 817 235 73 33 chr5 24504082 24504355 -128032904 - B4A SINE B4 -6 286 3 7 771 299 370 51 34 chr5 24504604 24504839 -128032420 - MIRb SINE MIR 0 268 30 8 771 186 43 0 0 chr5 24505472 24505495 -128031764 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 771 602 320 24 31 chr5 24505555 24505848 -128031411 - B4A SINE B4 0 292 2 1 771 1328 60 53 16 chr5 24505920 24506107 -128031152 + B2_Mm2 SINE B2 2 195 0 1 771 21 0 0 0 chr5 24506121 24506142 -128031117 + AT_rich Low_complexity Low_complexity 1 21 0 1 771 288 0 0 0 chr5 24506249 24506281 -128030978 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 771 748 285 126 6 chr5 24506281 24506606 -128030653 - Lx9 LINE L1 -181 7463 7100 1 771 458 246 189 50 chr5 24507693 24507915 -128029344 + B4A SINE B4 29 281 -11 1 771 285 255 105 41 chr5 24508813 24508985 -128028274 + L1M5 LINE L1 5149 5331 -815 1 771 728 259 11 5 chr5 24508985 24509171 -128028088 + B3A SINE B2 1 187 -11 1 771 534 103 0 0 chr5 24509175 24509253 -128028006 + (TC)n Simple_repeat Simple_repeat 1 78 0 1 771 1013 277 110 29 chr5 24509393 24509903 -128027356 + L1MB7 LINE L1 5497 6047 -137 1 772 496 268 94 131 chr5 24510537 24510897 -128026362 + L1MC4 LINE L1 6716 7062 -980 2 772 262 240 7 46 chr5 24510902 24511055 -128026204 + (CATA)n Simple_repeat Simple_repeat 4 150 0 2 772 294 316 0 0 chr5 24511071 24511147 -128026112 + (CA)n Simple_repeat Simple_repeat 1 76 0 2 772 453 334 145 40 chr5 24511186 24511794 -128025465 + L1MC4 LINE L1 7126 7797 -245 2 772 1133 120 17 0 chr5 24511836 24512035 -128025224 + URR1B DNA MER1_type 5 225 0 2 772 294 296 0 100 chr5 24512274 24512364 -128024895 - B4A SINE B4 0 292 212 2 772 546 236 164 13 chr5 24512434 24512593 -128024666 + ID_B1 SINE B4 35 217 -7 2 772 540 207 0 0 chr5 24514143 24514259 -128023000 + CT-rich Low_complexity Low_complexity 3 118 0 2 772 360 0 0 0 chr5 24515359 24515399 -128021860 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 772 566 259 126 65 chr5 24515441 24515672 -128021587 - B4 SINE B4 0 292 48 2 772 713 276 104 30 chr5 24517440 24517709 -128019550 + B4 SINE B4 2 290 -2 2 772 297 290 29 29 chr5 24517711 24517885 -128019374 + (CATATA)n Simple_repeat Simple_repeat 1 174 0 3 772 207 203 0 39 chr5 24517894 24517971 -128019288 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 772 342 185 80 80 chr5 24519179 24519279 -128017980 + MTEa LTR MaLR 1 100 -279 3 772 261 0 0 0 chr5 24519319 24519348 -128017911 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 772 404 298 91 30 chr5 24519812 24520011 -128017248 - MLT1C LTR MaLR -186 204 1 3 772 649 274 134 9 chr5 24520610 24520842 -128016417 + B4A SINE B4 21 281 -11 3 772 441 318 24 0 chr5 24522017 24522143 -128015116 + MLT1C LTR MaLR 53 181 -286 3 772 427 309 116 45 chr5 24522186 24522521 -128014738 - ORR1E LTR MaLR 0 359 1 3 772 309 100 0 0 chr5 24522772 24522822 -128014437 + (CAAT)n Simple_repeat Simple_repeat 2 51 0 3 772 304 320 70 0 chr5 24523006 24523134 -128014125 + B1F SINE Alu 13 149 0 3 772 409 244 103 7 chr5 24524835 24524971 -128012288 + B1F SINE Alu 1 149 0 4 772 213 293 27 0 chr5 24524980 24525055 -128012204 + ID2 SINE ID 2 78 -5 4 772 489 17 0 0 chr5 24525063 24525121 -128012138 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 772 589 255 34 130 chr5 24525617 24525710 -128011549 + MER2 DNA MER2_type 130 224 -121 4 772 856 224 65 0 chr5 24525710 24525911 -128011348 + B3 SINE B2 1 214 -2 4 772 589 255 34 130 chr5 24525911 24526056 -128011203 + MER2 DNA MER2_type 225 345 0 4 772 979 223 114 73 chr5 24526733 24527076 -128010183 + ORR1E LTR MaLR 1 357 -2 4 772 1140 56 0 0 chr5 24533163 24533307 -128003952 - B1_Mus1 SINE Alu 0 148 5 4 772 186 43 0 0 chr5 24533737 24533760 -128003499 + (CAGGG)n Simple_repeat Simple_repeat 3 25 0 4 772 1059 247 60 21 chr5 24535121 24535402 -128001857 - MTE2b LTR MaLR -4 375 84 4 772 378 0 0 0 chr5 24535682 24535724 -128001535 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 772 345 24 0 0 chr5 24535724 24535765 -128001494 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 772 280 206 32 0 chr5 24535765 24535828 -128001431 - tRNA-Ala-GCA tRNA tRNA -8 67 3 5 772 318 186 34 0 chr5 24535775 24535834 -128001425 - ID4 SINE ID -22 61 1 5 772 459 0 0 0 chr5 24536544 24536595 -128000664 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 772 867 233 80 0 chr5 24536599 24536848 -128000411 + ORR1D2 LTR MaLR 5 273 -97 5 772 225 65 0 0 chr5 24536860 24536891 -128000368 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 772 200 273 0 0 chr5 24536898 24536942 -128000317 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 772 405 123 0 0 chr5 24536990 24537055 -128000204 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 772 4050 77 12 30 chr5 24537716 24537930 -127999329 + Lx2 LINE L1 756 968 -5689 5 772 1070 48 7 58 chr5 24537930 24538084 -127999175 + B1_Mus1 SINE Alu 3 148 0 5 772 243 0 0 0 chr5 24538087 24538114 -127999145 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 772 4050 77 12 30 chr5 24538114 24538315 -127998944 + Lx2 LINE L1 969 1158 -5499 5 772 261 0 0 0 chr5 24538315 24538344 -127998915 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 772 7126 56 13 10 chr5 24538344 24538890 -127998369 + Lx2 LINE L1 1159 1711 -2203 5 772 2978 49 29 3 chr5 24538890 24539276 -127997983 + MTA_Mm LTR MaLR 1 396 0 6 772 7126 100 87 12 chr5 24539276 24540973 -127996286 + Lx2 LINE L1 1712 2241 -1673 5 772 1028 283 15 55 chr5 24541108 24541437 -127995822 + MLT1B LTR MaLR 22 337 -53 6 772 200 188 0 0 chr5 24541650 24541682 -127995577 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 772 276 100 0 0 chr5 24541701 24541741 -127995518 + (TCCA)n Simple_repeat Simple_repeat 3 42 0 6 772 489 279 108 17 chr5 24541793 24542034 -127995225 - L1M4 LINE L1 -667 5516 5254 6 772 562 283 12 0 chr5 24542176 24542342 -127994917 - L1M4 LINE L1 -1130 5016 4849 6 772 735 221 12 31 chr5 24542344 24542507 -127994752 + RSINE1 SINE B4 4 163 -2 6 772 2042 141 57 35 chr5 24542550 24542954 -127994305 - MTC LTR MaLR -8 413 1 6 772 380 288 83 137 chr5 24542954 24543377 -127993882 - L1M4 LINE L1 -1297 4843 4444 6 772 468 0 0 0 chr5 24543832 24543884 -127993375 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 772 288 0 0 0 chr5 24544198 24544230 -127993029 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 772 306 0 0 0 chr5 24545195 24545229 -127992030 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 772 271 259 19 0 chr5 24545271 24545325 -127991934 - B4 SINE B4 -20 272 218 7 772 2392 248 53 10 chr5 24545386 24545973 -127991286 + Lx7 LINE L1 6404 7015 -681 7 772 347 233 34 70 chr5 24545993 24546110 -127991149 + L1M2 LINE L1 3074 3175 -2971 7 772 247 267 0 109 chr5 24546132 24546233 -127991026 - BC1_Mm scRNA scRNA -49 103 14 7 772 372 212 0 105 chr5 24546155 24546250 -127991009 - B4 SINE B4 -206 86 2 7 772 224 339 81 27 chr5 24546428 24546613 -127990646 - MIRc SINE MIR -73 195 1 7 772 305 207 182 11 chr5 24548499 24548587 -127988672 - PB1D10 SINE Alu -1 116 14 7 772 1058 254 80 36 chr5 24548624 24548987 -127988272 - MTEa LTR MaLR 0 379 1 7 772 433 388 57 0 chr5 24550078 24550305 -127986954 + MLT2C2 LTR ERVL 54 293 -171 7 772 188 239 0 132 chr5 24551195 24551248 -127986011 + MIR3 SINE MIR 157 202 -6 7 772 1015 261 12 8 chr5 24551584 24551827 -127985432 + B4A SINE B4 47 290 -2 8 772 288 0 0 0 chr5 24551861 24551893 -127985366 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 772 414 0 0 0 chr5 24551893 24551939 -127985320 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 772 939 139 6 0 chr5 24551948 24552106 -127985153 - ORR1C1 LTR MaLR -219 159 1 8 772 296 255 20 50 chr5 24552135 24552234 -127985025 + RMER15 LTR ERVL 1 96 -479 8 772 524 256 62 56 chr5 24552286 24552447 -127984812 + RSINE1 SINE B4 4 165 0 8 772 300 321 69 35 chr5 24552792 24552937 -127984322 + RMER15 LTR ERVL 423 572 -3 8 772 182 290 76 61 chr5 24553149 24553281 -127983978 - MIRc SINE MIR -117 151 18 8 772 228 135 0 0 chr5 24553859 24553896 -127983363 + (TTA)n Simple_repeat Simple_repeat 2 38 0 8 772 486 294 135 2 chr5 24554248 24554521 -127982738 + L1MC2 LINE L1 5997 6246 -98 8 772 913 233 41 8 chr5 24555633 24555875 -127981384 + RMER15 LTR ERVL 326 575 0 8 772 364 271 113 84 chr5 24555876 24556203 -127981056 + MLT1A LTR MaLR 26 400 -8 9 772 207 0 0 0 chr5 24556419 24556442 -127980817 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 772 252 185 0 0 chr5 24557297 24557351 -127979908 + GA-rich Low_complexity Low_complexity 1 54 0 9 772 225 94 0 0 chr5 24557375 24557407 -127979852 + (CGGG)n Simple_repeat Simple_repeat 2 33 0 9 772 721 206 7 46 chr5 24557706 24557859 -127979400 + B1F2 SINE Alu 1 147 -2 9 772 292 246 14 0 chr5 24557895 24557964 -127979295 + ID_B1 SINE B4 95 164 -60 9 772 259 279 47 0 chr5 24558787 24558873 -127978386 + MTE2b LTR MaLR 1 90 -289 9 772 360 235 0 12 chr5 24560990 24561072 -127976187 + PB1D10 SINE Alu 1 81 -36 9 772 201 338 0 0 chr5 24561091 24561162 -127976097 + GA-rich Low_complexity Low_complexity 2 72 0 9 772 232 222 0 0 chr5 24561096 24561141 -127976118 + G-rich Low_complexity Low_complexity 2 46 0 9 772 570 175 187 5 chr5 24561975 24562157 -127975102 - B3A SINE B2 -6 210 3 1 772 410 206 78 0 chr5 24562157 24562249 -127975010 - ID_B1 SINE B4 -17 207 108 1 772 217 213 187 0 chr5 24562186 24562261 -127974998 - PB1D9 SINE Alu -22 98 10 1 772 193 369 99 7 chr5 24562531 24562673 -127974586 + MIRb SINE MIR 79 233 -35 1 772 444 304 0 26 chr5 24563047 24563162 -127974097 + RSINE1 SINE B4 12 123 -42 1 772 300 127 0 0 chr5 24563164 24563219 -127974040 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 772 274 250 0 0 chr5 24566086 24566142 -127971117 + MER74A LTR ERVL 269 324 -234 1 772 292 314 74 0 chr5 24566348 24566469 -127970790 + Charlie12 DNA MER1_type 2 131 -2742 1 772 984 263 33 22 chr5 24566440 24566716 -127970543 - B4 SINE B4 0 292 14 1 772 495 0 0 0 chr5 24568152 24568207 -127969052 + (TCTCTG)n Simple_repeat Simple_repeat 6 60 0 1 772 812 247 45 80 chr5 24568260 24568546 -127968713 - B4A SINE B4 -15 277 2 1 772 413 200 73 11 chr5 24568687 24568836 -127968423 + MTD LTR MaLR 222 405 -14 1 772 192 111 0 0 chr5 24570116 24570152 -127967107 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 1 772 215 340 28 1 chr5 24570730 24570809 -127966450 - MIRm SINE MIR -165 111 26 1 772 234 358 87 64 chr5 24571895 24572068 -127965191 + MIR SINE MIR 23 199 -69 1 772 251 154 19 0 chr5 24572077 24572129 -127965130 + B3A SINE B2 6 58 -140 1 772 428 117 13 0 chr5 24572186 24572263 -127964996 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 772 707 272 50 23 chr5 24574238 24574456 -127962803 - ID_B1 SINE B4 0 224 1 1 772 657 254 117 20 chr5 24574715 24574869 -127962390 + B3 SINE B2 1 165 -51 1 772 729 43 0 0 chr5 24574869 24574962 -127962297 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 772 657 254 117 20 chr5 24574962 24575004 -127962255 + B3 SINE B2 166 215 -1 1 772 449 258 25 0 chr5 24575131 24575251 -127962008 + ID_B1 SINE B4 93 215 -9 1 772 350 342 0 9 chr5 24575440 24575555 -127961704 - PB1D10 SINE Alu -1 116 3 1 772 274 232 29 0 chr5 24576185 24576254 -127961005 - MLT1C LTR MaLR -220 247 177 1 772 347 325 132 72 chr5 24576290 24576470 -127960789 - B4 SINE B4 -2 290 95 1 772 987 184 83 39 chr5 24576470 24576674 -127960585 - B3 SINE B2 -3 213 1 1 772 347 325 132 72 chr5 24576674 24576741 -127960518 - B4 SINE B4 -198 94 28 1 772 2078 136 43 16 chr5 24576741 24577116 -127960143 + ORR1B1 LTR MaLR 1 385 -9 1 772 674 264 112 0 chr5 24577356 24577534 -127959725 - ID_B1 SINE B4 -26 198 1 1 772 275 231 13 133 chr5 24578336 24578411 -127958848 - B4A SINE B4 0 292 227 1 772 279 93 0 0 chr5 24578413 24578456 -127958803 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 772 2841 115 12 14 chr5 24578840 24579255 -127958004 - MTC LTR MaLR -3 418 5 1 772 251 185 136 15 chr5 24580006 24580072 -127957187 + PB1D10 SINE Alu 44 117 0 1 772 718 131 93 40 chr5 24581871 24581895 -127955364 - ORR1C2 LTR MaLR -32 352 331 1 772 5995 73 0 0 chr5 24581895 24582649 -127954610 - L1Md_T LINE L1 0 6582 5829 1 772 718 131 93 40 chr5 24582649 24582775 -127954484 - ORR1C2 LTR MaLR -54 330 194 1 772 429 68 13 26 chr5 24582775 24582851 -127954408 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 1 772 249 174 0 0 chr5 24582866 24582912 -127954347 - ORR1C2 LTR MaLR -326 48 3 1 772 402 318 12 76 chr5 24583099 24583343 -127953916 - HAL1-2a_MD LINE L1 -502 2522 2345 1 772 1734 271 55 40 chr5 24585544 24586070 -127951189 + RMER5 LTR ERV1 1 534 0 1 772 580 231 15 15 chr5 24586903 24587035 -127950224 - B4 SINE B4 0 292 161 1 772 237 132 0 0 chr5 24587028 24587066 -127950193 - B4A SINE B4 -254 38 1 1 772 237 65 0 0 chr5 24588157 24588188 -127949071 + (CACTC)n Simple_repeat Simple_repeat 3 33 0 1 772 825 71 0 0 chr5 24588746 24588859 -127948400 + (TC)n Simple_repeat Simple_repeat 2 114 0 1 772 241 313 0 0 chr5 24590385 24590452 -127946807 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1 772 286 341 67 22 chr5 24591512 24591647 -127945612 + YREP_Mm Unknown Unknown 154 294 -1518 1 772 763 258 61 0 chr5 24591526 24591724 -127945535 - ID_B1 SINE B4 0 224 15 1 772 347 338 46 29 chr5 24592073 24592280 -127944979 + MIRb SINE MIR 11 227 -41 1 772 1534 38 43 0 chr5 24593501 24593685 -127943574 + B2_Mm1a SINE B2 2 193 0 1 772 1092 70 42 0 chr5 24594296 24594438 -127942821 + B1_Mus1 SINE Alu 1 148 0 1 772 693 92 0 0 chr5 24594442 24594540 -127942719 + (GGAGAA)n Simple_repeat Simple_repeat 5 102 0 1 772 405 0 0 0 chr5 24595911 24595956 -127941303 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 772 235 331 62 68 chr5 24595983 24596145 -127941114 - RSINE1 SINE B4 -2 163 3 1 772 285 248 33 74 chr5 24596507 24596629 -127940630 + LTR16A LTR ERVL 225 341 -110 1 772 676 307 100 59 chr5 24599308 24599647 -127937612 + MLT1B LTR MaLR 38 390 0 1 772 270 0 0 0 chr5 24600247 24600277 -127936982 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 772 334 252 34 17 chr5 24600651 24600768 -127936491 + (TA)n Simple_repeat Simple_repeat 2 120 0 1 772 231 261 34 11 chr5 24601303 24601392 -127935867 + (TAGA)n Simple_repeat Simple_repeat 1 91 0 1 772 2047 163 69 13 chr5 24601404 24601795 -127935464 - MTC LTR MaLR -8 413 1 1 772 396 104 0 0 chr5 24601815 24601882 -127935377 + (GGAA)n Simple_repeat Simple_repeat 1 67 0 1 772 276 355 25 44 chr5 24601967 24602126 -127935133 - MER5A DNA MER1_type -23 166 11 1 772 655 233 203 16 chr5 24602982 24603174 -127934085 + ORR1D1 LTR MaLR 1 228 -146 1 772 315 339 64 12 chr5 24603517 24603690 -127933569 + MER53 DNA hAT 8 189 -4 1 772 21 0 0 0 chr5 24606643 24606664 -127930595 + GC_rich Low_complexity Low_complexity 1 21 0 1 772 414 192 18 18 chr5 24608240 24608404 -127928855 + (TG)n Simple_repeat Simple_repeat 2 165 0 1 772 540 159 19 19 chr5 24608423 24608583 -127928676 + (TG)n Simple_repeat Simple_repeat 1 160 0 1 772 261 0 0 0 chr5 24608675 24608704 -127928555 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 772 488 204 10 0 chr5 24608714 24608812 -127928447 - PB1D9 SINE Alu 0 120 22 1 772 273 190 124 12 chr5 24608890 24608986 -127928273 + RSINE1 SINE B4 13 122 -170 1 772 378 236 37 31 chr5 24609023 24609131 -127928128 + RSINE1 SINE B4 79 274 -18 1 772 342 123 0 0 chr5 24609154 24609211 -127928048 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 772 304 179 18 18 chr5 24609214 24609271 -127927988 + B3A SINE B2 25 81 -117 1 772 253 155 0 33 chr5 24609397 24609457 -127927802 + GA-rich Low_complexity Low_complexity 4 61 0 1 772 188 296 0 18 chr5 24610179 24610234 -127927025 + MIR SINE MIR 85 138 -124 1 772 607 247 47 20 chr5 24610966 24611115 -127926144 - RSINE1 SINE B4 -10 155 3 1 772 237 65 0 0 chr5 24612077 24612108 -127925151 + (A)n Simple_repeat Simple_repeat 1 31 0 1 772 1951 145 21 52 chr5 24612115 24612522 -127924737 + RMER17C LTR ERVK 1 394 -16 1 772 806 70 9 0 chr5 24612522 24612636 -127924623 + (TTC)n Simple_repeat Simple_repeat 2 116 0 1 772 1951 145 21 52 chr5 24612636 24612651 -127924608 + RMER17C LTR ERVK 395 409 -1 1 772 204 40 0 0 chr5 24612784 24612809 -127924450 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 772 1680 246 151 24 chr5 24612907 24613457 -127923802 + RCHARR1 DNA MER1_type 73 692 -282 1 772 182 65 65 0 chr5 24614968 24614999 -127922260 + (CCCCCT)n Simple_repeat Simple_repeat 5 37 0 1 772 1036 296 79 7 chr5 24615081 24615452 -127921807 + MLT2D LTR ERVL 1 540 -19 1 772 384 71 0 0 chr5 24615974 24616030 -127921229 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 772 1167 241 4 40 chr5 24616034 24616306 -127920953 - B4 SINE B4 -27 265 4 1 772 746 326 50 7 chr5 24617921 24618199 -127919060 + RMER15-int LTR ERVL 4489 4778 -221 1 772 905 281 32 49 chr5 24618522 24618807 -127918452 + Lx8 LINE L1 6799 7078 -395 1 772 621 209 117 31 chr5 24618845 24619008 -127918251 - B3A SINE B2 -17 181 5 1 772 338 203 0 0 chr5 24619170 24619234 -127918025 + ID2 SINE ID 1 64 -19 1 772 192 152 0 0 chr5 24619328 24619361 -127917898 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 772 614 104 0 10 chr5 24620236 24620333 -127916926 + (TCCC)n Simple_repeat Simple_repeat 3 98 0 1 772 255 265 15 0 chr5 24620333 24620401 -127916858 + CT-rich Low_complexity Low_complexity 4 72 0 1 772 316 243 71 0 chr5 24620407 24620477 -127916782 - B1F SINE Alu -29 120 46 1 772 377 145 48 0 chr5 24620490 24620552 -127916707 - PB1D10 SINE Alu -5 112 48 1 772 1008 237 108 27 chr5 24620826 24621086 -127916173 - MTE2b LTR MaLR -14 365 85 1 772 243 0 0 0 chr5 24621491 24621518 -127915741 + (A)n Simple_repeat Simple_repeat 1 27 0 1 772 773 225 0 2 chr5 24622469 24622933 -127914326 + (TG)n Simple_repeat Simple_repeat 1 463 0 1 772 3107 52 10 5 chr5 24622933 24623321 -127913938 + RLTR10 LTR ERVK 1 390 0 1 772 773 194 0 6 chr5 24623321 24623369 -127913890 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 772 403 224 11 23 chr5 24623428 24623515 -127913744 - B4 SINE B4 -204 88 3 1 772 434 376 77 21 chr5 24623546 24623831 -127913428 + L2a LINE L2 3124 3424 -2 1 772 1171 263 84 35 chr5 24624176 24624332 -127912927 + Lx8 LINE L1 6998 7155 -318 1 772 2552 78 26 0 chr5 24624332 24624680 -127912579 + IAPEY2_LTR LTR ERVK 1 357 0 1 772 1171 263 84 35 chr5 24624680 24624976 -127912283 + Lx8 LINE L1 7156 7472 -1 1 772 690 223 17 30 chr5 24625657 24625823 -127911436 + ID_B1 SINE B4 102 266 -26 1 772 483 200 24 0 chr5 24625955 24626040 -127911219 + B3A SINE B2 2 88 -110 1 772 704 250 189 96 chr5 24626048 24626125 -127911134 + MTD LTR MaLR 1 47 -372 1 772 1153 75 7 0 chr5 24626125 24626271 -127910988 - B1_Mus1 SINE Alu 0 148 2 1 772 704 250 189 96 chr5 24626271 24626569 -127910690 + MTD LTR MaLR 48 411 -8 1 772 447 266 68 40 chr5 24626573 24626824 -127910435 - L1_Mur3 LINE L1 -1417 4463 4206 2 772 1052 173 55 10 chr5 24626827 24627026 -127910233 + URR1A DNA MER1_type 17 224 -2 2 772 1948 261 17 24 chr5 24627031 24627616 -127909643 - L1_Mur3 LINE L1 -1671 4209 3629 2 772 2446 283 35 42 chr5 24627604 24628428 -127908831 + Lx8 LINE L1 6650 7467 -6 2 772 272 119 17 0 chr5 24628684 24628743 -127908516 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 772 212 260 68 14 chr5 24628760 24628834 -127908425 - B3A SINE B2 -55 143 66 2 772 249 234 13 13 chr5 24629209 24629287 -127907972 + (TTTG)n Simple_repeat Simple_repeat 1 78 0 2 772 606 133 179 24 chr5 24629287 24629410 -127907849 - B1_Mur4 SINE Alu 0 150 9 2 772 375 300 93 65 chr5 24629415 24629554 -127907705 - ID_B1 SINE B4 0 224 82 2 772 192 40 0 0 chr5 24629627 24629652 -127907607 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2 772 1348 180 205 3 chr5 24630935 24631242 -127906017 + ORR1D2 LTR MaLR 1 369 -1 2 772 521 295 29 0 chr5 24631298 24631437 -127905822 + B1F2 SINE Alu 1 143 -6 2 772 1223 41 0 14 chr5 24631446 24631593 -127905666 + B1_Mus2 SINE Alu 1 145 -2 2 772 249 33 0 0 chr5 24631598 24631628 -127905631 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 772 205 138 0 0 chr5 24631628 24631657 -127905602 + (GGA)n Simple_repeat Simple_repeat 1 29 0 2 772 190 333 74 0 chr5 24632698 24632779 -127904480 - MIRb SINE MIR -161 107 21 2 772 756 288 106 11 chr5 24633099 24633373 -127903886 - MLT1C LTR MaLR -167 300 1 2 772 229 235 23 69 chr5 24633395 24633482 -127903777 - MER34A LTR ERV1 -427 144 62 2 772 3046 23 9 0 chr5 24634086 24634429 -127902830 + ORR1A0 LTR MaLR 1 346 0 2 772 1864 253 24 32 chr5 24634439 24634937 -127902322 - RLTR16 LTR ERVK -4 501 8 2 772 322 254 14 27 chr5 24634927 24635000 -127902259 + ID_B1 SINE B4 133 204 -20 2 772 447 68 0 0 chr5 24635008 24635067 -127902192 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 772 38 0 0 0 chr5 24635077 24635115 -127902144 + AT_rich Low_complexity Low_complexity 1 38 0 2 772 5496 145 68 26 chr5 24635190 24636329 -127900930 + Lx6 LINE L1 2072 3258 -2622 2 772 4941 26 17 3 chr5 24636341 24636919 -127900340 + L1Md_F2 LINE L1 5995 6580 -2 2 96 39264 5 0 0 chr5 24637008 24642163 -127895096 + L1Md_A LINE L1 430 5586 -297 2 773 9183 2 0 4 chr5 24642163 24643163 -127894096 + L1Md_A LINE L1 5587 6582 0 2 773 1893 135 87 69 chr5 24643175 24643612 -127893647 + Lx6 LINE L1 3331 3775 -2105 2 773 1185 163 39 43 chr5 24643612 24643869 -127893390 + Lx6 LINE L1 5232 5487 -393 2 773 1078 191 221 24 chr5 24643873 24644162 -127893097 - RMER6C LTR ERVK -7 683 338 2 773 939 65 0 0 chr5 24644200 24644323 -127892936 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 2 773 6360 134 19 31 chr5 24644323 24645350 -127891909 - Lx LINE L1 -13 6641 5628 2 773 1433 113 7 18 chr5 24645350 24645637 -127891622 - RMER6C LTR ERVK -369 321 1 2 773 2090 154 85 9 chr5 24645641 24646104 -127891155 + Lx6 LINE L1 5491 5981 -1479 2 773 242 315 14 0 chr5 24646343 24646416 -127890843 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 773 3292 43 2 15 chr5 24646437 24646838 -127890421 - MTA_Mm LTR MaLR 0 396 1 2 773 597 267 150 34 chr5 24646838 24647071 -127890188 - B4A SINE B4 -24 268 9 2 773 324 0 0 0 chr5 24647224 24647260 -127889999 + (TAA)n Simple_repeat Simple_repeat 3 38 0 2 773 3225 196 181 55 chr5 24648143 24648946 -127888313 + RMER13B LTR ERVK 5 908 0 2 773 325 315 176 28 chr5 24649200 24649455 -127887804 - MLT1C LTR MaLR 0 467 175 2 773 242 340 61 20 chr5 24649703 24649850 -127887409 - L2 LINE L2 -1437 1982 1830 2 773 2426 158 22 101 chr5 24651147 24651653 -127885606 + RMER4A LTR ERVK 1 466 0 2 773 780 130 61 0 chr5 24651653 24651784 -127885475 + MurERV4-int LTR ERVK 1 139 -5121 2 773 2113 140 14 41 chr5 24651791 24652155 -127885104 + ORR1B1 LTR MaLR 41 394 0 2 773 2291 163 52 5 chr5 24652156 24652562 -127884697 + ORR1B1-int LTR MaLR 2 426 -1537 2 773 313 261 10 42 chr5 24652562 24652658 -127884601 + ORR1B1 LTR MaLR 1 93 -236 2 773 3660 122 18 83 chr5 24652666 24653353 -127883906 + RLTR26 LTR ERVK 1 642 0 2 773 1353 135 92 110 chr5 24653353 24653645 -127883614 + ORR1B1 LTR MaLR 43 329 0 2 773 7881 136 49 142 chr5 24653645 24655477 -127881782 + ORR1B1-int LTR MaLR 302 1963 0 2 773 2034 127 45 51 chr5 24655484 24655840 -127881419 + ORR1B1 LTR MaLR 41 394 0 2 773 8880 177 65 35 chr5 24655842 24657236 -127880023 + MurERV4-int LTR ERVK 134 1540 -3720 2 773 1217 62 0 0 chr5 24657236 24657382 -127879877 - B1_Mus2 SINE Alu -1 146 1 2 773 8880 143 95 19 chr5 24657382 24658785 -127878474 + MurERV4-int LTR ERVK 1541 3080 -2180 2 773 1289 99 11 0 chr5 24658771 24658952 -127878307 + MurERV4-int LTR ERVK 5078 5260 0 2 773 2476 152 46 9 chr5 24658968 24659401 -127877858 + RMER4A LTR ERVK 8 456 -10 2 773 786 249 39 14 chr5 24659437 24659645 -127877614 + ID_B1 SINE B4 3 215 -9 2 773 470 277 26 12 chr5 24659654 24659844 -127877415 + B3A SINE B2 1 195 0 2 773 294 345 110 12 chr5 24660950 24661123 -127876136 + LTR33 LTR ERVL 326 515 0 2 773 945 156 63 104 chr5 24662094 24662316 -127874943 + B3 SINE B2 1 213 -3 2 773 996 224 153 10 chr5 24662804 24663092 -127874167 + MTEa LTR MaLR 25 353 -26 2 773 1878 162 58 85 chr5 24663092 24663490 -127873769 - RLTR41 LTR ERV1 0 446 60 2 773 2833 158 46 22 chr5 24664813 24665601 -127871658 + RMER19B LTR ERVK 1 864 -38 2 773 3604 15 2 0 chr5 24665601 24665996 -127871263 + MTA_Mm LTR MaLR 1 396 0 2 773 2833 167 73 31 chr5 24665996 24666040 -127871219 + RMER19B LTR ERVK 865 902 0 2 773 298 264 0 90 chr5 24666536 24666636 -127870623 - MER117 DNA MER1_type -10 187 97 2 773 568 216 361 24 chr5 24666756 24666969 -127870290 - B4A SINE B4 -7 285 1 2 773 681 93 9 9 chr5 24667041 24667098 -127870161 - B1_Mur3 SINE Alu 0 149 55 2 773 255 115 56 141 chr5 24667098 24667135 -127870124 - 4.5SRNA scRNA scRNA -8 86 56 2 773 279 79 0 0 chr5 24667135 24667173 -127870086 + (TCTCTG)n Simple_repeat Simple_repeat 2 39 0 2 773 681 93 9 9 chr5 24667173 24667186 -127870073 - B1_Mur3 SINE Alu -95 54 42 2 773 255 115 56 141 chr5 24667186 24667206 -127870053 - 4.5SRNA scRNA scRNA -39 55 22 2 773 387 141 0 0 chr5 24667636 24667700 -127869559 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 773 621 247 49 33 chr5 24667700 24667884 -127869375 - B3A SINE B2 -11 187 1 2 773 1200 68 0 0 chr5 24668217 24668363 -127868896 + B1_Mus1 SINE Alu 1 146 -2 2 773 397 250 47 140 chr5 24668652 24668914 -127868345 - B4A SINE B4 -56 236 1 2 773 2547 216 68 36 chr5 24668993 24669715 -127867544 + RMER1B Other Other 153 1055 -11 2 773 270 81 0 0 chr5 24669731 24669768 -127867491 + (GGA)n Simple_repeat Simple_repeat 2 38 0 2 773 467 236 45 2 chr5 24669796 24669927 -127867332 - L1MB3 LINE L1 -271 5912 5764 2 773 355 313 9 9 chr5 24670480 24670596 -127866663 - ID_B1 SINE B4 -1 223 108 2 773 857 116 6 19 chr5 24670643 24670801 -127866458 + (TTC)n Simple_repeat Simple_repeat 3 158 0 2 773 625 299 76 0 chr5 24670803 24671000 -127866259 - ID_B1 SINE B4 -11 213 2 2 773 1406 253 88 37 chr5 24671346 24671915 -127865344 + RLTR26 LTR ERVK 5 642 0 2 773 22 26 0 25 chr5 24671980 24672007 -127865252 + AT_rich Low_complexity Low_complexity 1 27 0 2 773 545 316 26 0 chr5 24672007 24672159 -127865100 - RSINE1 SINE B4 -8 157 2 2 773 22 26 0 25 chr5 24672159 24672171 -127865088 + AT_rich Low_complexity Low_complexity 1 12 0 2 773 297 0 0 0 chr5 24673754 24673787 -127863472 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 773 441 0 0 0 chr5 24674182 24674231 -127863028 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 773 432 183 0 0 chr5 24674231 24674324 -127862935 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 773 229 275 14 28 chr5 24674709 24674780 -127862479 + PB1D10 SINE Alu 46 115 -2 2 773 269 267 105 46 chr5 24674812 24674965 -127862294 + HAL1 LINE L1 1635 1796 -711 2 773 405 309 28 0 chr5 24675278 24675400 -127861859 + ID_B1 SINE B4 83 218 -74 2 773 276 220 0 0 chr5 24676162 24676212 -127861047 + L1_Mus4 LINE L1 6394 6443 -193 2 773 441 0 0 0 chr5 24676871 24676920 -127860339 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 773 448 122 24 0 chr5 24677104 24677186 -127860073 + (GA)n Simple_repeat Simple_repeat 1 84 0 2 773 1088 164 92 0 chr5 24677352 24677559 -127859700 - URR1A DNA MER1_type 0 226 1 2 773 399 194 0 0 chr5 24677707 24677800 -127859459 + A-rich Low_complexity Low_complexity 1 93 0 2 773 1990 143 91 12 chr5 24677828 24678245 -127859014 - RMER6A LTR ERVK 0 756 307 2 773 1252 66 5 11 chr5 24678232 24678417 -127858842 - B2_Mm2 SINE B2 -5 190 7 2 773 2036 115 6 26 chr5 24678410 24678750 -127858509 - RMER6A LTR ERVK -423 333 1 2 773 368 238 91 120 chr5 24678981 24679193 -127858066 - MTEa LTR MaLR 0 379 156 2 773 1332 151 46 0 chr5 24679244 24679483 -127857776 + ORR1A4 LTR MaLR 59 308 -21 2 773 452 222 235 59 chr5 24680212 24680365 -127856894 - B3A SINE B2 -18 180 1 2 773 527 249 91 27 chr5 24680605 24680712 -127856547 - B3A SINE B2 0 198 80 2 773 2392 202 102 9 chr5 24680712 24681270 -127855989 + RMER19C LTR ERVK 2 611 0 2 773 527 249 91 27 chr5 24681270 24681348 -127855911 - B3A SINE B2 -119 79 1 2 773 537 194 39 0 chr5 24681377 24681480 -127855779 - PB1D9 SINE Alu -11 109 3 2 773 545 231 0 51 chr5 24681499 24681636 -127855623 - ID_B1 SINE B4 -10 214 85 2 773 1938 68 108 4 chr5 24681907 24682185 -127855074 - L1_Mus1 LINE L1 -1 6566 6260 2 773 2748 74 1 33 chr5 24682185 24682584 -127854675 + Lx2B LINE L1 5533 5921 -1079 2 773 334 320 31 8 chr5 24682584 24682713 -127854546 + MLT1B LTR MaLR 247 378 -12 2 773 501 152 131 0 chr5 24683117 24683216 -127854043 + PB1D9 SINE Alu 3 114 -6 2 773 589 131 15 0 chr5 24683217 24683347 -127853912 + (GA)n Simple_repeat Simple_repeat 2 133 0 2 773 217 135 18 55 chr5 24683347 24683402 -127853857 + GA-rich Low_complexity Low_complexity 2 54 0 2 773 703 250 83 94 chr5 24683423 24683667 -127853592 + L1MB7 LINE L1 5626 5869 -315 2 773 612 227 58 39 chr5 24683667 24683823 -127853436 + RSINE1 SINE B4 3 161 -4 2 773 703 250 83 94 chr5 24683823 24683940 -127853319 + L1MB7 LINE L1 5870 5983 -201 2 773 340 248 30 53 chr5 24684030 24684162 -127853097 - RLTR13D3 LTR ERVK -42 1072 944 2 773 1140 38 0 0 chr5 24684188 24684321 -127852938 + B1_Mm SINE Alu 2 134 -13 2 773 269 119 0 0 chr5 24684574 24684616 -127852643 - B2_Mm2 SINE B2 -153 42 1 2 773 831 275 14 64 chr5 24685149 24685444 -127851815 - B4A SINE B4 -11 281 2 2 773 471 53 0 39 chr5 24685454 24685532 -127851727 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 3 773 1231 41 0 0 chr5 24685534 24685681 -127851578 - B1_Mus1 SINE Alu 0 148 2 3 773 319 313 14 43 chr5 24686071 24686211 -127851048 - ID_B1 SINE B4 -87 137 2 3 773 261 0 0 0 chr5 24686242 24686271 -127850988 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 773 372 22 0 0 chr5 24686371 24686416 -127850843 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 773 714 269 158 20 chr5 24686435 24686689 -127850570 - B4A SINE B4 -2 290 2 3 773 1083 264 63 35 chr5 24687928 24688246 -127849013 - MTE2b LTR MaLR -52 327 1 3 773 617 104 10 10 chr5 24688301 24688398 -127848861 + B1_Mur4 SINE Alu 27 123 -27 3 773 302 303 11 0 chr5 24688482 24688571 -127848688 + (CA)n Simple_repeat Simple_repeat 2 91 0 3 773 497 246 64 24 chr5 24688754 24688879 -127848380 - B4A SINE B4 -63 229 100 3 773 1355 56 84 0 chr5 24688917 24689096 -127848163 - B2_Mm2 SINE B2 0 195 2 3 773 640 182 208 17 chr5 24689118 24689291 -127847968 - B3 SINE B2 -9 207 2 3 773 208 143 0 0 chr5 24689304 24689339 -127847920 + (T)n Simple_repeat Simple_repeat 1 35 0 3 773 306 231 31 0 chr5 24689340 24689405 -127847854 - B4 SINE B4 -198 94 28 3 773 311 293 133 66 chr5 24689488 24689744 -127847515 - B4 SINE B4 -18 274 2 3 773 223 317 0 0 chr5 24689808 24689868 -127847391 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 773 230 301 60 0 chr5 24690267 24690400 -127846859 - HAL1 LINE L1 -1323 1184 1044 3 773 281 325 187 0 chr5 24690576 24690742 -127846517 - MLT1B LTR MaLR -25 365 169 3 773 796 304 23 0 chr5 24691266 24691480 -127845779 + ID_B1 SINE B4 3 221 -3 3 773 1329 81 32 0 chr5 24692361 24692547 -127844712 - B2_Mm2 SINE B2 -3 192 1 3 773 451 252 58 0 chr5 24693273 24693412 -127843847 - L1MDb LINE L1 -5327 1082 936 3 773 744 179 228 10 chr5 24694264 24694461 -127842798 - 7SK RNA RNA -91 240 1 3 773 1575 167 99 20 chr5 24694464 24694758 -127842501 + RMER1B Other Other 353 669 -397 3 773 553 215 19 0 chr5 24695055 24695213 -127842046 + (TATG)n Simple_repeat Simple_repeat 1 161 0 3 773 491 319 82 19 chr5 24695222 24695430 -127841829 + MTE2a LTR MaLR 155 375 -4 3 773 407 297 61 0 chr5 24696146 24696294 -127840965 - L1MB3 LINE L1 -183 6000 5844 3 773 287 148 74 0 chr5 24696609 24696663 -127840596 + ID_B1 SINE B4 113 170 -54 3 773 5332 49 3 6 chr5 24696923 24697584 -127839675 + L1Md_F2 LINE L1 5912 6570 -12 3 773 894 181 31 0 chr5 24697586 24697813 -127839446 - ORR1B1-int LTR MaLR -618 891 658 3 773 357 203 0 0 chr5 24697822 24697886 -127839373 - Lx9 LINE L1 -232 7412 7349 3 773 402 213 43 69 chr5 24697986 24698102 -127839157 - RSINE1 SINE B4 0 165 53 3 773 1782 129 212 3 chr5 24698112 24698438 -127838821 - ORR1B1 LTR MaLR 0 394 1 3 773 343 177 310 0 chr5 24698483 24698596 -127838663 - L1M2 LINE L1 -473 5818 5671 3 773 413 223 79 78 chr5 24698653 24698846 -127838413 - L1M2 LINE L1 -374 5509 5324 3 773 610 278 149 0 chr5 24698846 24699040 -127838219 - ID_B1 SINE B4 -1 223 1 3 773 382 255 205 15 chr5 24699040 24699235 -127838024 - L1M2 LINE L1 -820 5323 5090 3 773 612 216 0 23 chr5 24699683 24699811 -127837448 + B1_Mur1 SINE Alu 4 128 -21 3 773 231 203 130 39 chr5 24700597 24700674 -127836585 + RSINE1 SINE B4 75 158 -7 3 773 946 230 16 0 chr5 24700730 24700921 -127836338 + B3A SINE B2 3 196 -2 3 773 207 0 0 0 chr5 24701281 24701304 -127835955 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 3 773 265 299 35 70 chr5 24701337 24701353 -127835906 - PB1D10 SINE Alu 0 117 7 3 773 295 275 10 81 chr5 24701353 24701452 -127835807 - ID_B1 SINE B4 -45 179 88 3 773 559 315 43 43 chr5 24701860 24702014 -127835245 + ID_B1 SINE B4 3 152 -72 3 773 1134 75 7 0 chr5 24702014 24702160 -127835099 + B1_Mus2 SINE Alu 1 147 0 3 773 559 315 43 43 chr5 24702160 24702214 -127835045 + ID_B1 SINE B4 153 210 -14 3 773 1023 96 0 24 chr5 24702214 24702384 -127834875 + (GAAA)n Simple_repeat Simple_repeat 4 169 0 3 773 1167 71 0 0 chr5 24702386 24702527 -127834732 + B1_Mm SINE Alu 1 141 -6 3 773 708 45 0 0 chr5 24702527 24702615 -127834644 + (GGAA)n Simple_repeat Simple_repeat 3 90 0 3 773 345 255 207 45 chr5 24703330 24703552 -127833707 - MLT1A0 LTR MaLR -103 262 5 3 773 519 60 0 0 chr5 24703566 24703633 -127833626 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 773 956 260 55 17 chr5 24704395 24704685 -127832574 - ORR1E LTR MaLR -57 302 2 3 773 331 38 19 19 chr5 24705718 24705772 -127831487 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 3 773 1054 82 0 0 chr5 24705773 24705908 -127831351 - B1_Mus2 SINE Alu -12 135 1 3 773 879 194 183 19 chr5 24705956 24706213 -127831046 + ORR1D1 LTR MaLR 76 374 0 3 773 214 271 188 0 chr5 24706513 24706657 -127830602 + L2a LINE L2 2925 3095 -331 3 773 629 289 93 121 chr5 24706687 24707181 -127830078 + RMER13A LTR ERVK 30 557 -70 3 773 697 335 42 4 chr5 24707610 24707871 -127829388 - MER44B DNA MER2_type -257 293 23 3 773 802 285 40 66 chr5 24708001 24708275 -127828984 - B4 SINE B4 -25 267 1 3 773 1829 166 99 3 chr5 24708538 24708913 -127828346 + MTC LTR MaLR 3 413 -8 3 773 776 40 10 0 chr5 24709266 24709366 -127827893 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 3 773 408 71 0 0 chr5 24709367 24709423 -127827836 + (TCC)n Simple_repeat Simple_repeat 3 58 0 3 773 752 167 91 0 chr5 24709423 24709555 -127827704 - B1_Mur3 SINE Alu -5 144 1 3 773 189 0 0 0 chr5 24709699 24709720 -127827539 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 773 1010 277 5 0 chr5 24709743 24709963 -127827296 - B4 SINE B4 -29 263 43 3 773 184 180 160 0 chr5 24711208 24711258 -127826001 + L2 LINE L2 1755 1812 -1607 3 773 3035 222 111 26 chr5 24711270 24711999 -127825260 - Lx6 LINE L1 -5 7455 6665 3 773 1205 183 103 0 chr5 24712019 24712308 -127824951 - L1_Mur2 LINE L1 -472 5408 5075 3 773 399 95 0 31 chr5 24712712 24712777 -127824482 - RLTR23 LTR ERV1 0 430 368 3 773 1659 114 19 38 chr5 24712752 24713070 -127824189 - BGLII_A LTR ERVK -48 397 86 3 773 1991 174 124 71 chr5 24713137 24713546 -127823713 + RMER12B LTR ERVK 1 454 -950 3 773 1337 84 16 16 chr5 24713546 24713725 -127823534 + B2_Mm2 SINE B2 3 182 -13 3 773 1089 95 0 39 chr5 24713725 24713878 -127823381 + B1_Mm SINE Alu 1 147 0 3 773 1337 84 16 16 chr5 24713878 24713891 -127823368 + B2_Mm2 SINE B2 183 195 0 3 773 1991 174 124 71 chr5 24713891 24713989 -127823270 + RMER12B LTR ERVK 455 535 -869 3 773 4085 160 16 45 chr5 24713993 24714826 -127822433 - RLTR13C2 LTR ERVK 0 1033 1 3 773 1749 250 68 57 chr5 24714826 24715527 -127821732 + RMER12 LTR ERVK 452 1160 -162 3 773 1137 236 87 3 chr5 24715594 24715929 -127821330 + L1MA6 LINE L1 5623 5985 -315 3 773 580 239 23 0 chr5 24715929 24716059 -127821200 - B3A SINE B2 -52 146 14 3 773 183 222 0 0 chr5 24716584 24716629 -127820630 + CT-rich Low_complexity Low_complexity 3 47 0 3 773 525 285 208 13 chr5 24716665 24716896 -127820363 - B4 SINE B4 -12 280 5 3 773 462 195 128 128 chr5 24717015 24717036 -127820223 + RLTR26 LTR ERVK 5 25 -883 3 773 3678 77 8 2 chr5 24717036 24717508 -127819751 - MT2C_Mm LTR ERVL 0 475 1 3 773 1858 224 70 68 chr5 24717508 24718078 -127819181 + RLTR26 LTR ERVK 26 642 0 3 773 356 274 55 79 chr5 24718167 24718294 -127818965 + RSINE1 SINE B4 42 165 0 3 773 719 157 13 60 chr5 24718551 24718700 -127818559 + B1_Mus2 SINE Alu 6 147 0 3 773 265 177 0 37 chr5 24718700 24718782 -127818477 + A-rich Low_complexity Low_complexity 3 81 0 3 773 352 279 127 25 chr5 24719016 24719174 -127818085 - MTE2b LTR MaLR -63 316 143 3 773 475 263 134 6 chr5 24719241 24719413 -127817846 - MTE2b LTR MaLR -185 194 1 3 773 370 237 92 17 chr5 24719685 24719805 -127817454 - MIR SINE MIR -50 212 84 3 773 1435 60 39 0 chr5 24720216 24720398 -127816861 + B2_Mm2 SINE B2 2 190 -5 3 773 288 0 0 0 chr5 24720450 24720482 -127816777 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 773 983 104 15 0 chr5 24720485 24720620 -127816639 - B1_Mur4 SINE Alu -13 137 1 3 773 353 113 0 0 chr5 24721492 24721545 -127815714 + B2_Mm2 SINE B2 13 65 -130 3 773 598 229 57 7 chr5 24721549 24721690 -127815569 + RSINE1 SINE B4 3 150 -15 3 773 355 267 162 0 chr5 24721769 24721874 -127815385 - RSINE1 SINE B4 -22 143 22 3 773 468 274 0 16 chr5 24721882 24722123 -127815136 + (CACCT)n Simple_repeat Simple_repeat 1 237 0 3 773 212 298 0 0 chr5 24722187 24722234 -127815025 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 3 773 649 242 88 95 chr5 24722235 24722518 -127814741 - B4A SINE B4 0 292 12 3 773 257 304 25 82 chr5 24722409 24722531 -127814728 - B3A SINE B2 -77 121 7 3 773 355 381 21 37 chr5 24722800 24722988 -127814271 + MIR SINE MIR 21 205 -57 3 773 494 241 17 0 chr5 24723017 24723133 -127814126 + ID_B1 SINE B4 1 118 -106 3 773 1218 215 176 8 chr5 24724013 24724370 -127812889 - MTD LTR MaLR 0 419 3 3 773 249 265 11 108 chr5 24724387 24724480 -127812779 + B3A SINE B2 107 190 -8 3 773 331 155 56 14 chr5 24724485 24724557 -127812702 + PB1D9 SINE Alu 46 120 0 3 773 1270 34 0 0 chr5 24724560 24724706 -127812553 + B1_Mm SINE Alu 2 147 0 3 773 542 235 113 0 chr5 24724904 24725019 -127812240 + B1_Mur1 SINE Alu 22 149 0 3 773 944 251 71 104 chr5 24725052 24725361 -127811898 - MT2B LTR ERVL 0 533 214 3 773 474 33 0 0 chr5 24725361 24725421 -127811838 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 773 944 249 65 102 chr5 24725421 24725612 -127811647 - MT2B LTR ERVL -244 357 43 3 773 931 227 73 157 chr5 24727062 24727150 -127810109 + MTEb LTR MaLR 6 73 -306 4 773 738 179 13 40 chr5 24727150 24727301 -127809958 - B1_Mus1 SINE Alu -1 147 1 4 773 931 227 73 157 chr5 24727301 24727620 -127809639 + MTEb LTR MaLR 74 379 0 4 773 539 309 110 65 chr5 24727897 24728233 -127809026 - ORR1E LTR MaLR 0 359 9 4 773 270 254 94 26 chr5 24729574 24729691 -127807568 - L1MB4 LINE L1 -1 6179 6055 4 773 998 209 109 113 chr5 24729822 24730277 -127806982 + MT2B LTR ERVL 7 599 -2 4 773 2432 63 63 0 chr5 24730460 24730778 -127806481 - L1Md_F2 LINE L1 0 6582 6245 4 773 521 221 9 19 chr5 24731318 24731424 -127805835 - PB1D7 SINE Alu -15 105 1 4 773 464 267 10 0 chr5 24731535 24731636 -127805623 + B3A SINE B2 1 102 -96 4 773 357 24 0 0 chr5 24731665 24731707 -127805552 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 773 21 57 0 0 chr5 24731707 24731742 -127805517 + AT_rich Low_complexity Low_complexity 1 35 0 4 773 658 301 104 26 chr5 24731998 24732089 -127805170 - L1MD1 LINE L1 0 6242 6149 4 773 4996 41 3 0 chr5 24732089 24732674 -127804585 - LTRIS_Mus LTR ERV1 0 587 1 4 773 658 301 104 26 chr5 24732674 24732927 -127804332 - L1MD1 LINE L1 -94 6148 5871 4 773 304 248 244 17 chr5 24732999 24733114 -127804145 - MER20 DNA MER1_type -52 167 27 4 773 202 353 0 0 chr5 24733382 24733433 -127803826 + L4 LINE RTE 377 427 -1602 4 773 269 293 50 10 chr5 24733639 24733739 -127803520 + RMER15 LTR ERVL 414 517 -58 4 773 211 216 0 0 chr5 24734278 24734329 -127802930 + T-rich Low_complexity Low_complexity 1 51 0 4 773 3789 101 64 5 chr5 24734475 24735035 -127802224 + MT2B LTR ERVL 1 593 -8 4 773 628 277 0 72 chr5 24735210 24735362 -127801897 - ID_B1 SINE B4 -1 223 83 4 773 24 67 0 0 chr5 24735858 24735903 -127801356 + AT_rich Low_complexity Low_complexity 1 45 0 4 773 1000 237 24 5 chr5 24736080 24736292 -127800967 - B3 SINE B2 0 216 1 4 773 6779 14 1 0 chr5 24736516 24737257 -127800002 + RLTR4_Mm LTR ERV1 1 742 0 4 773 63238 16 6 0 chr5 24737257 24744243 -127793016 + RLTR4_MM-int LTR ERV1 1 7028 -573 4 773 4395 19 0 0 chr5 24744265 24744747 -127792512 + RLTR4_MM-int LTR ERV1 7120 7601 0 4 773 6779 14 1 0 chr5 24744747 24745488 -127791771 + RLTR4_Mm LTR ERV1 1 742 0 4 773 3446 107 46 66 chr5 24746170 24746779 -127790480 + RLTR6_Mm LTR ERV1 1 597 -57 4 773 279 0 0 0 chr5 24747128 24747159 -127790100 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 773 1130 72 0 0 chr5 24747159 24747298 -127789961 - B1_Mus1 SINE Alu -9 139 1 4 773 530 155 90 9 chr5 24747801 24747912 -127789347 - PB1D9 SINE Alu 0 120 1 4 773 296 139 0 0 chr5 24747968 24748011 -127789248 + RSINE1 SINE B4 81 123 -42 4 773 218 176 20 0 chr5 24748012 24748063 -127789196 + CT-rich Low_complexity Low_complexity 2 53 0 4 773 297 75 0 0 chr5 24748069 24748109 -127789150 + (CATGT)n Simple_repeat Simple_repeat 1 40 0 4 773 575 295 94 24 chr5 24748335 24748547 -127788712 - B4A SINE B4 -37 255 29 4 773 1273 66 6 0 chr5 24749427 24749593 -127787666 + B2_Mm1a SINE B2 2 168 -25 4 773 24 0 0 0 chr5 24749620 24749644 -127787615 + AT_rich Low_complexity Low_complexity 1 24 0 4 773 288 293 79 20 chr5 24750431 24750532 -127786727 - L2a LINE L2 -1 3425 3319 4 773 3662 55 39 2 chr5 24750937 24751395 -127785864 + MT2C_Mm LTR ERVL 1 475 0 4 773 2441 31 0 0 chr5 24751420 24751708 -127785551 - L1_Mus2 LINE L1 -614 5952 5665 4 773 748 287 24 15 chr5 24751700 24751905 -127785354 + Lx8 LINE L1 6319 6525 -948 4 773 370 252 120 16 chr5 24752857 24752982 -127784277 - B1F SINE Alu -8 141 4 4 773 898 151 0 7 chr5 24753778 24753918 -127783341 - B1_Mus1 SINE Alu -6 142 4 4 773 1156 63 0 0 chr5 24754127 24754270 -127782989 - B1_Mus2 SINE Alu 0 147 5 4 773 483 205 172 0 chr5 24754285 24754407 -127782852 - B1_Mur1 SINE Alu 0 149 7 4 773 276 247 150 88 chr5 24754288 24754448 -127782811 - B4 SINE B4 -69 223 54 4 773 246 143 0 0 chr5 24754822 24754864 -127782395 - B1_Mur4 SINE Alu -7 143 102 4 773 301 237 104 77 chr5 24754876 24755059 -127782200 - RLTR12A LTR ERVK -10 558 371 4 773 271 196 0 51 chr5 24755363 24755422 -127781837 - RLTR25A LTR ERVK -527 576 521 4 773 643 184 0 0 chr5 24755369 24755467 -127781792 - B1_Mus1 SINE Alu -50 98 1 4 773 238 196 140 18 chr5 24755435 24755492 -127781767 - MT2B LTR ERVL -520 81 18 4 773 270 290 185 7 chr5 24756441 24756587 -127780672 - L1MD2 LINE L1 -312 6047 5876 4 773 978 107 43 0 chr5 24756854 24756994 -127780265 + B1_Mus2 SINE Alu 1 146 -1 4 773 204 135 0 0 chr5 24757005 24757042 -127780217 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 4 773 818 203 0 26 chr5 24757321 24757473 -127779786 - B1_Mur2 SINE Alu -1 148 1 4 773 430 236 108 86 chr5 24757473 24757605 -127779654 - B1F SINE Alu -13 136 1 4 773 1726 189 73 3 chr5 24758034 24758378 -127778881 - ORR1D1 LTR MaLR -6 368 1 4 773 267 263 100 17 chr5 24758858 24758876 -127778383 - B1_Mur3 SINE Alu -19 130 1 4 773 333 245 88 0 chr5 24758876 24758978 -127778281 - ID_B1 SINE B4 -32 192 82 4 773 1174 56 0 7 chr5 24759834 24759979 -127777280 - B1_Mm SINE Alu -2 145 2 4 773 605 182 159 0 chr5 24761094 24761220 -127776039 + B1_Mus1 SINE Alu 1 146 -2 4 773 798 154 20 40 chr5 24761238 24761387 -127775872 - B1_Mus2 SINE Alu 0 147 2 4 773 207 0 0 0 chr5 24761734 24761757 -127775502 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 773 435 276 41 0 chr5 24761907 24762030 -127775229 - Lx7 LINE L1 -388 7308 7181 4 773 368 311 103 54 chr5 24762248 24762452 -127774807 - L1MEg LINE L1 -5299 785 572 4 773 246 261 58 165 chr5 24762635 24762823 -127774436 - MER20 DNA MER1_type -50 169 2 4 773 273 57 0 0 chr5 24763578 24763613 -127773646 + (ACATG)n Simple_repeat Simple_repeat 1 35 0 4 773 473 287 0 0 chr5 24763613 24763714 -127773545 - RSINE1 SINE B4 -34 131 31 4 773 530 257 57 7 chr5 24763745 24763886 -127773373 - RSINE1 SINE B4 -14 151 4 4 773 284 275 114 22 chr5 24763945 24764172 -127773087 + B4A SINE B4 4 251 -41 4 773 906 149 22 44 chr5 24764179 24764361 -127772898 - B2_Mm2 SINE B2 -16 179 2 4 773 224 100 25 0 chr5 24765358 24765398 -127771861 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 773 695 185 25 0 chr5 24765398 24765517 -127771742 - B1_Mur3 SINE Alu -1 148 27 4 773 401 228 47 132 chr5 24766157 24766263 -127770996 + B1_Mur1 SINE Alu 21 146 -3 4 773 412 297 74 98 chr5 24766303 24766445 -127770814 + Charlie1a DNA MER1_type 762 900 -555 4 773 1535 73 0 0 chr5 24766445 24766637 -127770622 - B2_Mm1a SINE B2 0 193 2 4 773 412 297 74 98 chr5 24766637 24766660 -127770599 + Charlie1a DNA MER1_type 901 921 -534 4 773 1147 54 0 58 chr5 24766660 24766816 -127770443 - B1_Mm SINE Alu 0 147 1 4 773 412 297 74 98 chr5 24766816 24766855 -127770404 + Charlie1a DNA MER1_type 922 953 -502 4 773 266 287 81 27 chr5 24766855 24766966 -127770293 + PB1D10 SINE Alu 1 117 0 4 773 412 297 74 98 chr5 24766966 24767084 -127770175 + Charlie1a DNA MER1_type 954 1078 -377 4 773 231 143 0 23 chr5 24767093 24767136 -127770123 + B4A SINE B4 10 51 -241 4 773 506 269 27 14 chr5 24767355 24767502 -127769757 - B1_Mur3 SINE Alu 0 149 1 4 773 732 232 112 98 chr5 24768486 24768773 -127768486 + B4 SINE B4 1 291 -1 4 773 338 297 10 0 chr5 24768982 24769083 -127768176 - PB1D10 SINE Alu -15 102 1 4 773 1834 32 0 0 chr5 24771466 24771686 -127765573 + MusHAL1 LINE L1 2432 2651 -61 4 774 1141 89 113 0 chr5 24773413 24773581 -127763678 + B2_Mm2 SINE B2 2 188 -7 4 774 241 259 21 105 chr5 24773900 24773995 -127763264 + MT2B2 LTR ERVL 153 239 -345 4 774 573 256 53 0 chr5 24773920 24774053 -127763206 + B1_Mur1 SINE Alu 7 146 -3 4 774 324 230 23 11 chr5 24774097 24774185 -127763074 + Tigger5 DNA MER2_type 2171 2259 -147 4 774 297 227 53 0 chr5 24774785 24774917 -127762342 + ORR1B1-int LTR MaLR 616 754 -755 4 774 1149 43 0 0 chr5 24774816 24774957 -127762302 + B1_Mus2 SINE Alu 7 147 0 4 774 225 0 0 0 chr5 24774957 24774982 -127762277 + (A)n Simple_repeat Simple_repeat 1 25 0 4 774 1243 41 0 0 chr5 24775178 24775324 -127761935 - B1_Mus1 SINE Alu 0 148 3 4 774 180 0 0 0 chr5 24775325 24775345 -127761914 + (T)n Simple_repeat Simple_repeat 1 20 0 4 774 657 48 0 0 chr5 24776848 24776931 -127760328 - B1_Mus2 SINE Alu 0 147 65 4 774 819 97 26 0 chr5 24776929 24777042 -127760217 - B1_Mus1 SINE Alu -10 138 23 4 774 337 227 125 67 chr5 24777069 24777173 -127760086 - PB1D10 SINE Alu -7 110 1 4 774 227 254 113 81 chr5 24777173 24777204 -127760055 - MT2B2 LTR ERVL -422 162 128 4 774 220 258 0 8 chr5 24779180 24779256 -127758003 + A-rich Low_complexity Low_complexity 1 75 0 4 774 261 343 148 45 chr5 24779909 24780153 -127757106 + RMER5 LTR ERV1 15 283 -251 4 774 204 289 95 76 chr5 24782620 24782725 -127754534 - L4 LINE RTE -196 1833 1727 4 774 443 244 0 11 chr5 24782793 24782880 -127754379 - PB1D10 SINE Alu -8 109 24 4 774 208 139 0 0 chr5 24783497 24783533 -127753726 + (A)n Simple_repeat Simple_repeat 1 36 0 4 774 571 249 36 42 chr5 24783710 24783903 -127753356 + B3A SINE B2 1 192 -6 4 774 235 305 115 33 chr5 24784462 24784584 -127752675 + RSINE1 SINE B4 22 153 -12 4 774 1203 90 12 0 chr5 24784599 24784766 -127752493 + B2_Mm1t SINE B2 11 179 -14 4 774 395 75 335 18 chr5 24784794 24784900 -127752359 + B2_Mm2 SINE B2 47 189 -6 4 774 452 231 57 137 chr5 24785319 24785655 -127751604 - RLTR15 LTR ERVK -18 341 33 4 774 3254 48 0 10 chr5 24786134 24786534 -127750725 + MTA_Mm LTR MaLR 1 396 0 5 774 203 156 0 0 chr5 24786932 24786964 -127750295 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 774 27 0 0 0 chr5 24788100 24788127 -127749132 + AT_rich Low_complexity Low_complexity 1 27 0 5 774 268 364 86 0 chr5 24788174 24788314 -127748945 - RSINE1 SINE B4 -9 156 5 5 774 239 281 56 37 chr5 24788426 24788533 -127748726 - PB1D10 SINE Alu -8 109 1 5 774 773 211 94 24 chr5 24792114 24792284 -127744975 + B3A SINE B2 1 182 -16 5 774 28 71 0 0 chr5 24792300 24792356 -127744903 + AT_rich Low_complexity Low_complexity 1 56 0 5 774 21 0 0 0 chr5 24792406 24792427 -127744832 + AT_rich Low_complexity Low_complexity 1 21 0 5 774 271 350 0 0 chr5 24792583 24792663 -127744596 + ID4_ SINE ID 1 80 -3 5 774 324 283 92 81 chr5 24793074 24793136 -127744123 + MT2B LTR ERVL 75 245 -352 5 774 398 292 28 9 chr5 24793136 24793153 -127744106 + B4 SINE B4 66 84 -208 5 774 624 165 122 0 chr5 24793153 24793268 -127743991 + B1_Mur3 SINE Alu 1 129 -20 5 774 240 100 0 0 chr5 24793285 24793325 -127743934 + (A)n Simple_repeat Simple_repeat 1 40 0 5 774 243 242 0 0 chr5 24795402 24795464 -127741795 + (CATA)n Simple_repeat Simple_repeat 3 64 0 5 774 966 79 28 14 chr5 24795636 24795777 -127741482 - B1_Mus1 SINE Alu 0 148 6 5 774 342 220 0 99 chr5 24795673 24795804 -127741455 - MT2B LTR ERVL -337 264 147 5 774 350 260 45 0 chr5 24795827 24795981 -127741278 - RMER17C LTR ERVK -136 274 114 5 774 2213 58 27 3 chr5 24798057 24798349 -127738910 + L1_Mus3 LINE L1 6340 6638 0 5 774 661 228 129 23 chr5 24798410 24798581 -127738678 + B3 SINE B2 4 192 -24 5 774 24 53 0 0 chr5 24799994 24800032 -127737227 + AT_rich Low_complexity Low_complexity 1 38 0 5 774 756 279 94 47 chr5 24801979 24802195 -127735064 - B3 SINE B2 -6 210 9 5 774 400 304 75 25 chr5 24802459 24802658 -127734601 - MER58B DNA MER1_type -21 320 112 5 774 317 222 237 0 chr5 24802722 24802857 -127734402 + MER5A1 DNA MER1_type 4 170 -19 5 774 543 267 0 32 chr5 24803162 24803286 -127733973 - PB1D7 SINE Alu 0 120 1 5 774 272 402 0 0 chr5 24804312 24804414 -127732845 + Charlie19a DNA Charlie 29 130 -256 5 774 207 222 22 0 chr5 24805300 24805345 -127731914 + T-rich Low_complexity Low_complexity 2 47 0 5 774 236 260 0 0 chr5 24807759 24807809 -127729450 - ID4_ SINE ID -22 61 12 5 774 497 228 79 0 chr5 24808144 24808245 -127729014 - B1_Mur2 SINE Alu -13 136 28 5 774 202 211 0 0 chr5 24809880 24809918 -127727341 - L3 LINE CR1 -2341 2148 2111 5 774 468 280 56 0 chr5 24812189 24812296 -127724963 + B1F SINE Alu 21 133 -16 5 774 186 410 10 10 chr5 24813595 24813691 -127723568 - MER5A DNA MER1_type -31 158 63 5 774 200 167 23 23 chr5 24817403 24817446 -127719813 + (CATA)n Simple_repeat Simple_repeat 2 44 0 5 774 185 0 40 0 chr5 24817463 24817488 -127719771 + (TTA)n Simple_repeat Simple_repeat 2 27 0 5 774 1208 48 0 0 chr5 24817497 24817644 -127719615 - B1_Mm SINE Alu 0 147 1 5 774 614 379 14 25 chr5 24817838 24818114 -127719145 + B4 SINE B4 14 286 -6 5 774 2291 68 3 0 chr5 24818540 24818834 -127718425 + L1_Mus2 LINE L1 6265 6559 -7 5 774 758 52 10 0 chr5 24818834 24818931 -127718328 + B1_Mus2 SINE Alu 50 147 0 5 774 189 196 0 0 chr5 24818931 24818982 -127718277 + A-rich Low_complexity Low_complexity 1 51 0 5 774 411 21 0 0 chr5 24821575 24821623 -127715636 + (CTG)n Simple_repeat Simple_repeat 2 49 0 5 774 287 184 0 0 chr5 24821959 24822008 -127715251 - 5S rRNA rRNA -72 49 1 5 774 9441 138 50 16 chr5 24822009 24824775 -127712484 + Lx3C LINE L1 4112 6973 -3 5 774 471 113 0 0 chr5 24825205 24825276 -127711983 + (TATG)n Simple_repeat Simple_repeat 2 72 0 5 774 1197 68 0 0 chr5 24825372 24825519 -127711740 + B1_Mus2 SINE Alu 1 147 0 5 774 673 248 6 38 chr5 24826513 24826672 -127710587 + B3 SINE B2 1 154 -62 5 774 385 268 0 11 chr5 24826700 24826787 -127710472 + Lx8 LINE L1 7196 7281 -192 5 774 15939 85 16 0 chr5 24826790 24829262 -127707997 - L1_Mus1 LINE L1 -559 6008 3499 5 774 506 102 14 37 chr5 24829262 24829359 -127707900 + B1_Mm SINE Alu 49 150 0 5 774 565 172 379 0 chr5 24830745 24830890 -127706369 + B3 SINE B2 4 203 -13 5 774 249 108 0 0 chr5 24830897 24830934 -127706325 + (CAGG)n Simple_repeat Simple_repeat 2 38 0 5 774 217 254 31 16 chr5 24831047 24831111 -127706148 - MIR SINE MIR -22 240 176 5 774 190 73 49 0 chr5 24831113 24831154 -127706105 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 5 774 829 159 14 20 chr5 24831293 24831441 -127705818 + B1_Mus1 SINE Alu 1 147 -1 5 774 205 313 30 0 chr5 24831920 24831987 -127705272 + (TATG)n Simple_repeat Simple_repeat 3 71 0 5 774 513 306 20 118 chr5 24831992 24832296 -127704963 - B4A SINE B4 -18 274 1 5 774 919 142 178 11 chr5 24833006 24833191 -127704068 - URR1B DNA MER1_type -3 222 7 5 774 234 0 0 0 chr5 24834139 24834165 -127703094 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 774 324 0 0 0 chr5 24834165 24834200 -127703059 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 774 420 323 18 77 chr5 24834273 24834441 -127702818 + RSINE1 SINE B4 8 165 0 5 774 369 361 80 26 chr5 24834479 24834630 -127702629 + RSINE1 SINE B4 3 161 -4 5 774 24 53 0 0 chr5 24835133 24835171 -127702088 + AT_rich Low_complexity Low_complexity 1 38 0 5 774 24 67 0 0 chr5 24835787 24835832 -127701427 + AT_rich Low_complexity Low_complexity 1 45 0 5 774 363 136 0 0 chr5 24836452 24836511 -127700748 + (A)n Simple_repeat Simple_repeat 1 59 0 5 774 24 53 0 0 chr5 24836955 24836993 -127700266 + AT_rich Low_complexity Low_complexity 1 38 0 5 774 568 310 141 59 chr5 24837747 24838188 -127699071 - L1MA4A LINE L1 -393 5910 5393 5 774 669 187 28 14 chr5 24838188 24838329 -127698930 - B1_Mur2 SINE Alu -6 143 1 5 774 922 304 123 52 chr5 24838329 24838748 -127698511 - L1MA4A LINE L1 -744 5399 4977 5 774 1156 62 0 0 chr5 24838748 24838894 -127698365 - B1_Mus2 SINE Alu 0 147 2 5 774 922 302 123 51 chr5 24838894 24839876 -127697383 - L1MA4A LINE L1 -1142 5001 3893 5 774 824 181 7 0 chr5 24839917 24840055 -127697204 + B1_Mur4 SINE Alu 5 143 -7 5 774 199 0 65 0 chr5 24840070 24840101 -127697158 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 5 774 420 216 99 40 chr5 24840335 24840436 -127696823 + B1F2 SINE Alu 43 149 0 5 774 884 232 14 33 chr5 24841117 24841331 -127695928 + B3 SINE B2 1 210 -6 5 774 264 200 0 0 chr5 24841348 24841408 -127695851 + (CATA)n Simple_repeat Simple_repeat 3 62 0 5 774 429 324 21 1 chr5 24841511 24841640 -127695619 - B4 SINE B4 -144 148 16 5 774 23 33 0 0 chr5 24841670 24841700 -127695559 + AT_rich Low_complexity Low_complexity 1 30 0 5 774 786 266 77 10 chr5 24841719 24841913 -127695346 + B3 SINE B2 9 215 -1 5 774 207 0 0 0 chr5 24842335 24842358 -127694901 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 774 471 285 161 6 chr5 24842888 24843068 -127694191 - ID_B1 SINE B4 -16 208 1 5 774 414 0 0 0 chr5 24843107 24843153 -127694106 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 774 796 273 11 0 chr5 24843190 24843377 -127693882 - B4 SINE B4 -102 190 2 5 774 762 211 7 0 chr5 24843504 24843646 -127693613 - B1_Mur2 SINE Alu -6 143 1 5 774 332 265 17 0 chr5 24843900 24844017 -127693242 + L1ME1 LINE L1 6061 6179 0 5 774 240 264 11 0 chr5 24844046 24844133 -127693126 + L1ME1 LINE L1 6092 6179 0 5 774 548 319 25 6 chr5 24845402 24845560 -127691699 + RSINE1 SINE B4 3 163 -2 5 774 1700 239 49 27 chr5 24845747 24846152 -127691107 + MTD LTR MaLR 6 419 0 5 774 340 352 70 78 chr5 24846187 24846458 -127690801 + B4 SINE B4 2 270 -22 5 774 289 109 18 18 chr5 24846507 24846563 -127690696 + (TCTCC)n Simple_repeat Simple_repeat 2 57 0 5 774 215 291 16 0 chr5 24846891 24846960 -127690299 - L2b LINE L2 -278 3148 3074 5 774 216 288 23 81 chr5 24847161 24847248 -127690011 + ID4 SINE ID 2 83 0 5 774 489 301 14 36 chr5 24847639 24847777 -127689482 - RSINE1 SINE B4 -25 140 6 5 774 457 309 65 22 chr5 24847808 24847947 -127689312 + ID_B1 SINE B4 79 223 -1 5 774 217 243 0 14 chr5 24847961 24848032 -127689227 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 5 774 692 212 207 0 chr5 24848269 24848448 -127688811 + B3 SINE B2 1 216 0 5 774 320 243 14 0 chr5 24848549 24848619 -127688640 + ID SINE ID 3 73 -151 5 774 275 288 12 12 chr5 24848619 24848630 -127688629 + ID4_ SINE ID 3 83 0 5 774 599 256 0 15 chr5 24848762 24848897 -127688362 + B1_Mur1 SINE Alu 1 133 -16 5 774 387 332 63 45 chr5 24848996 24849217 -127688042 + B4A SINE B4 5 229 -63 5 774 411 299 126 7 chr5 24849223 24849358 -127687901 + RSINE1 SINE B4 9 159 -6 5 774 527 296 142 16 chr5 24849526 24849773 -127687486 + B4 SINE B4 1 278 -14 5 774 1067 76 14 0 chr5 24849888 24850032 -127687227 + B1_Mus2 SINE Alu 2 147 0 5 774 220 87 42 42 chr5 24850473 24850521 -127686738 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 5 774 595 208 28 0 chr5 24851100 24851206 -127686053 - B1_Mur1 SINE Alu -17 132 24 5 774 659 228 13 40 chr5 24852356 24852507 -127684752 - B1_Mus1 SINE Alu 0 148 2 6 774 23 0 0 0 chr5 24852588 24852611 -127684648 + AT_rich Low_complexity Low_complexity 1 23 0 6 774 191 88 0 29 chr5 24852992 24853027 -127684232 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 6 774 279 54 0 0 chr5 24853481 24853518 -127683741 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 774 344 319 0 0 chr5 24853520 24853614 -127683645 - B4A SINE B4 0 292 199 6 774 422 308 22 30 chr5 24853724 24853858 -127683401 - B4A SINE B4 -150 142 10 6 774 422 248 191 0 chr5 24854809 24854966 -127682293 + B3A SINE B2 2 188 -10 6 774 793 217 154 0 chr5 24855387 24855562 -127681697 + B3 SINE B2 1 202 -14 6 774 247 121 0 33 chr5 24855820 24855880 -127681379 + A-rich Low_complexity Low_complexity 5 62 0 6 774 397 256 0 0 chr5 24856013 24856103 -127681156 + B1_Mus2 SINE Alu 43 132 -15 6 774 1077 102 0 0 chr5 24856212 24856359 -127680900 + B1_Mus1 SINE Alu 1 147 -1 6 774 428 294 44 7 chr5 24858364 24858501 -127678758 - B1F SINE Alu -7 142 1 6 774 23 68 0 0 chr5 24858705 24858749 -127678510 + AT_rich Low_complexity Low_complexity 1 44 0 6 774 186 228 0 0 chr5 24858762 24858812 -127678447 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 774 243 0 0 0 chr5 24858812 24858839 -127678420 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 774 186 228 0 0 chr5 24858839 24858845 -127678414 + (TA)n Simple_repeat Simple_repeat 2 7 0 6 774 1464 62 5 0 chr5 24858849 24859044 -127678215 - L1Md_F3 LINE L1 -14 6570 6375 6 774 21 0 0 0 chr5 24859976 24859997 -127677262 + AT_rich Low_complexity Low_complexity 1 21 0 6 774 387 105 0 0 chr5 24860737 24860794 -127676465 + (CATA)n Simple_repeat Simple_repeat 2 58 0 6 774 493 174 213 8 chr5 24861359 24861481 -127675778 - B1_Mus1 SINE Alu 0 148 2 6 774 266 382 53 32 chr5 24862598 24862787 -127674472 + Charlie1 DNA MER1_type 48 240 -2541 6 774 255 266 93 39 chr5 24862770 24862899 -127674360 + Charlie1 DNA MER1_type 2640 2775 -6 6 774 293 315 8 122 chr5 24863040 24863163 -127674096 - RSINE1 SINE B4 -2 163 55 6 774 986 117 53 43 chr5 24863338 24863525 -127673734 - B2_Mm2 SINE B2 -6 189 1 6 774 1327 79 11 0 chr5 24863573 24863750 -127673509 + B2_Mm1t SINE B2 1 179 -14 6 774 585 23 34 11 chr5 24863750 24863838 -127673421 + L1Md_F2 LINE L1 6493 6582 0 6 774 243 337 10 80 chr5 24864610 24864710 -127672549 + RSINE1 SINE B4 3 95 -70 6 774 1048 106 0 0 chr5 24864721 24864862 -127672397 + B1_Mus1 SINE Alu 2 142 -6 6 774 716 0 12 0 chr5 24864863 24864947 -127672312 + (GAGAA)n Simple_repeat Simple_repeat 3 87 0 6 774 298 326 0 0 chr5 24864987 24865073 -127672186 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 774 401 271 65 0 chr5 24865671 24865778 -127671481 + PB1D7 SINE Alu 1 114 -6 6 774 541 296 67 48 chr5 24865956 24866226 -127671033 + MER33 DNA MER1_type 47 321 -3 6 774 256 127 109 0 chr5 24866725 24866780 -127670479 - B1F SINE Alu -77 72 12 6 774 491 242 86 0 chr5 24866998 24867126 -127670133 - B1_Mur1 SINE Alu -8 141 3 6 774 204 200 0 0 chr5 24867312 24867357 -127669902 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 6 774 213 65 0 0 chr5 24867357 24867388 -127669871 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 774 397 244 47 0 chr5 24867426 24867529 -127669730 - B1_Mur1 SINE Alu -35 114 6 6 774 6842 88 79 13 chr5 24867700 24867711 -127669548 + Lx3_Mus LINE L1 5913 5922 -1087 6 774 595 270 94 17 chr5 24867711 24867892 -127669367 + B3A SINE B2 2 196 -2 6 774 6842 88 79 13 chr5 24867892 24868909 -127668350 + Lx3_Mus LINE L1 5923 7009 0 6 774 21 0 0 0 chr5 24868909 24868930 -127668329 + AT_rich Low_complexity Low_complexity 1 21 0 6 774 23 33 0 0 chr5 24868974 24869004 -127668255 + AT_rich Low_complexity Low_complexity 1 30 0 6 774 316 262 113 60 chr5 24869766 24869916 -127667343 - MIRb SINE MIR -35 233 76 6 774 1145 82 6 6 chr5 24870739 24870898 -127666361 + B2_Mm1t SINE B2 2 160 -33 6 774 351 0 0 0 chr5 24870898 24870937 -127666322 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 774 481 228 0 11 chr5 24871075 24871168 -127666091 + B1F1 SINE Alu 6 97 -52 6 774 1793 204 30 19 chr5 24873576 24873946 -127663313 + ORR1D1 LTR MaLR 1 374 0 6 774 244 352 105 60 chr5 24873998 24874397 -127662862 + L2 LINE L2 2498 2914 -505 6 774 255 335 80 80 chr5 24876213 24876388 -127660871 + B4 SINE B4 46 220 -72 6 774 533 254 37 0 chr5 24876258 24876392 -127660867 + B1F2 SINE Alu 9 147 -2 6 774 379 250 0 77 chr5 24876699 24876803 -127660456 + PB1D10 SINE Alu 15 110 -7 6 774 235 261 56 22 chr5 24877081 24877171 -127660088 + B1F SINE Alu 10 102 -47 6 774 207 0 0 0 chr5 24879511 24879534 -127657725 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 6 774 727 219 13 20 chr5 24879954 24880103 -127657156 + B1_Mur2 SINE Alu 1 148 -1 6 774 349 291 48 19 chr5 24881465 24881568 -127655691 + PB1D10 SINE Alu 12 117 0 6 774 3298 78 2 11 chr5 24881967 24882423 -127654836 + L1Md_F2 LINE L1 6130 6581 -1 6 774 347 365 26 33 chr5 24882615 24882643 -127654616 + B4 SINE B4 63 152 -140 6 774 518 252 0 9 chr5 24882643 24882751 -127654508 + B1_Mur1 SINE Alu 2 108 -41 6 774 347 365 26 33 chr5 24882751 24882768 -127654491 + B4 SINE B4 153 214 -78 6 774 352 225 49 24 chr5 24883403 24883485 -127653774 - Lx8 LINE L1 -211 7262 7179 6 774 329 249 34 8 chr5 24883595 24883721 -127653538 - Lx8 LINE L1 -300 7173 7031 6 774 1152 42 7 0 chr5 24883746 24883889 -127653370 + B1_Mm SINE Alu 2 145 -2 6 774 261 0 0 0 chr5 24883889 24883918 -127653341 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 774 284 303 176 26 chr5 24884192 24884385 -127652874 + Lx8 LINE L1 7243 7464 -9 6 774 234 316 81 15 chr5 24884946 24885206 -127652053 + L1MC4a LINE L1 5680 5956 -1926 6 774 903 104 0 77 chr5 24886308 24886464 -127650795 + B1_Mus2 SINE Alu 4 147 0 6 774 204 40 0 0 chr5 24886464 24886489 -127650770 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 774 247 342 13 26 chr5 24886920 24886998 -127650261 + ID4_ SINE ID 7 83 0 6 774 767 176 7 0 chr5 24887067 24887203 -127650056 + B1_Mur4 SINE Alu 2 138 -12 6 774 215 211 14 27 chr5 24887821 24887894 -127649365 + GA-rich Low_complexity Low_complexity 2 73 0 6 774 513 141 0 0 chr5 24887914 24887999 -127649260 + (GGGA)n Simple_repeat Simple_repeat 3 87 0 6 774 395 272 9 46 chr5 24888021 24888129 -127649130 - RSINE1 SINE B4 -61 104 1 6 774 264 240 0 0 chr5 24888287 24888337 -127648922 - PB1D10 SINE Alu -21 96 47 6 774 23 0 0 0 chr5 24888746 24888769 -127648490 + AT_rich Low_complexity Low_complexity 1 23 0 6 774 262 295 0 60 chr5 24888886 24888969 -127648290 + PB1D9 SINE Alu 16 93 -27 6 774 214 229 184 46 chr5 24889937 24890024 -127647235 + PB1D7 SINE Alu 6 104 -16 6 774 201 167 229 0 chr5 24890837 24890885 -127646374 + MIRc SINE MIR 88 146 -122 6 774 628 44 0 0 chr5 24891829 24891919 -127645340 + L1Md_T LINE L1 6493 6582 0 6 774 249 108 0 0 chr5 24892257 24892294 -127644965 + B2_Mm2 SINE B2 102 138 -57 6 774 520 256 10 30 chr5 24892399 24892530 -127644729 + RSINE1 SINE B4 1 123 -169 6 774 222 118 0 0 chr5 24892530 24892564 -127644695 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 774 294 281 53 112 chr5 24892564 24892586 -127644673 + B4A SINE B4 124 144 -148 6 774 22 35 0 0 chr5 24893510 24893539 -127643720 + AT_rich Low_complexity Low_complexity 1 29 0 6 774 23 33 0 0 chr5 24893932 24893962 -127643297 + AT_rich Low_complexity Low_complexity 1 30 0 6 774 235 362 9 0 chr5 24894391 24894496 -127642763 - RMER12 LTR ERVK -480 842 737 6 774 279 326 51 0 chr5 24894923 24895021 -127642238 - MER58C DNA MER1_type -106 109 7 6 774 278 333 85 20 chr5 24895788 24895907 -127641352 + RSINE1 SINE B4 3 125 -40 6 774 423 0 0 0 chr5 24895907 24895954 -127641305 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 774 278 333 85 20 chr5 24895954 24895987 -127641272 + RSINE1 SINE B4 126 164 -1 6 774 190 180 33 0 chr5 24895988 24896049 -127641210 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 774 412 365 8 0 chr5 24896097 24896223 -127641036 + ID_B1 SINE B4 91 217 -7 6 774 188 34 0 33 chr5 24896248 24896257 -127641002 + (CA)n Simple_repeat Simple_repeat 2 10 0 6 774 4343 105 40 44 chr5 24896257 24897011 -127640248 - RMER17A LTR ERVK 0 751 1 6 774 188 34 0 33 chr5 24897011 24897031 -127640228 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 774 479 267 91 0 chr5 24898015 24898191 -127639068 + MER33 DNA MER1_type 24 215 -109 6 774 584 250 28 8 chr5 24898613 24898761 -127638498 + B4A SINE B4 134 290 -2 6 774 918 28 0 0 chr5 24898851 24898960 -127638299 + (GGAAA)n Simple_repeat Simple_repeat 3 111 0 6 774 23 0 0 0 chr5 24899622 24899645 -127637614 + AT_rich Low_complexity Low_complexity 1 23 0 6 774 266 317 28 56 chr5 24899956 24900063 -127637196 + RSINE1 SINE B4 5 108 -57 6 774 385 255 19 29 chr5 24900832 24900937 -127636322 + PB1D9 SINE Alu 1 104 -16 6 774 529 170 19 39 chr5 24901038 24901142 -127636117 - B1_Mus1 SINE Alu -21 127 26 6 774 3546 132 171 13 chr5 24901455 24902165 -127635094 + L1_Mur2 LINE L1 3689 4494 -1383 6 96 17650 88 57 21 chr5 24902167 24905878 -127631381 + Lx3B LINE L1 3119 6973 0 6 775 763 135 21 0 chr5 24905904 24906045 -127631214 + GA-rich Low_complexity Low_complexity 1 144 0 6 775 309 312 310 0 chr5 24906347 24906569 -127630690 + B4A SINE B4 2 292 0 6 775 409 276 180 3 chr5 24906651 24906945 -127630314 + L1M2 LINE L1 2694 3039 -3104 6 775 567 256 7 58 chr5 24906977 24907114 -127630145 + B3A SINE B2 39 168 -30 6 775 216 86 0 0 chr5 24907115 24907150 -127630109 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 7 775 279 219 15 45 chr5 24907381 24907448 -127629811 + B1_Mur3 SINE Alu 2 66 -83 7 775 198 0 0 0 chr5 24907495 24907517 -127629742 + (T)n Simple_repeat Simple_repeat 1 22 0 7 775 780 184 0 0 chr5 24907518 24907654 -127629605 - B1_Mus1 SINE Alu 0 148 13 7 775 259 253 39 117 chr5 24907563 24907666 -127629593 - MT2B LTR ERVL -344 257 163 7 775 229 26 0 50 chr5 24907666 24907706 -127629553 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 7 775 432 313 165 24 chr5 24907739 24907988 -127629271 - Cheshire DNA MER1_type -2090 330 47 7 775 383 277 55 55 chr5 24908046 24908210 -127629049 + RSINE1 SINE B4 2 165 0 7 775 216 333 49 0 chr5 24908691 24908772 -127628487 - ID SINE ID -139 85 1 7 775 244 346 45 45 chr5 24908786 24908919 -127628340 - B1_Mur4 SINE Alu -8 142 10 7 775 685 210 7 7 chr5 24909358 24909502 -127627757 + B1_Mus1 SINE Alu 3 146 -2 7 775 433 227 0 0 chr5 24909527 24909602 -127627657 + B1_Mur3 SINE Alu 1 75 -74 7 775 250 308 15 0 chr5 24909879 24909944 -127627315 + ID_B1 SINE B4 114 179 -45 7 775 469 58 0 55 chr5 24909973 24910064 -127627195 + (GGA)n Simple_repeat Simple_repeat 3 88 0 7 775 418 295 62 8 chr5 24910267 24910397 -127626862 + B1F SINE Alu 12 148 -1 7 775 518 307 7 0 chr5 24910492 24910629 -127626630 + MER5A DNA MER1_type 49 186 -3 7 775 252 0 0 0 chr5 24910739 24910767 -127626492 + (G)n Simple_repeat Simple_repeat 1 28 0 7 775 21 36 0 0 chr5 24911379 24911407 -127625852 + AT_rich Low_complexity Low_complexity 1 28 0 7 775 28 29 0 0 chr5 24912021 24912056 -127625203 + AT_rich Low_complexity Low_complexity 1 35 0 7 775 21 36 0 0 chr5 24912237 24912265 -127624994 + AT_rich Low_complexity Low_complexity 1 28 0 7 775 452 205 0 24 chr5 24912666 24912751 -127624508 + B3A SINE B2 2 84 -114 7 775 1094 50 0 0 chr5 24912861 24913001 -127624258 + L1_Mus2 LINE L1 6427 6566 0 7 775 605 262 28 0 chr5 24913064 24913209 -127624050 + B1_Mur1 SINE Alu 1 149 0 7 775 22 0 0 0 chr5 24913422 24913444 -127623815 + AT_rich Low_complexity Low_complexity 1 22 0 7 775 262 317 0 109 chr5 24913891 24913983 -127623276 - B3A SINE B2 -7 191 110 7 775 276 312 66 102 chr5 24914000 24914016 -127623243 - B2_Mm2 SINE B2 -6 189 178 7 775 198 0 0 0 chr5 24914016 24914038 -127623221 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 775 485 312 66 102 chr5 24914038 24914217 -127623042 - B3A SINE B2 -18 177 1 7 775 23 0 0 0 chr5 24914223 24914246 -127623013 + AT_rich Low_complexity Low_complexity 1 23 0 7 775 739 297 7 14 chr5 24915307 24915502 -127621757 - B3A SINE B2 -7 188 1 7 775 443 341 77 41 chr5 24915686 24915906 -127621353 - B4A SINE B4 -56 236 9 7 775 248 283 136 68 chr5 24916174 24916394 -127620865 + L1MC2 LINE L1 6054 6288 -56 7 775 252 0 0 0 chr5 24916501 24916529 -127620730 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 7 775 504 0 0 0 chr5 24916531 24916587 -127620672 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 775 320 226 115 31 chr5 24916599 24916695 -127620564 - PB1D9 SINE Alu -14 106 3 7 775 341 279 128 0 chr5 24916997 24917083 -127620176 + B2_Mm2 SINE B2 1 97 -98 7 775 814 109 231 7 chr5 24917247 24917394 -127619865 + B2_Mm2 SINE B2 2 181 -14 7 775 1423 80 5 0 chr5 24917412 24917599 -127619660 + B2_Mm1t SINE B2 1 188 -5 7 775 715 269 74 33 chr5 24917664 24918056 -127619203 + L1M2 LINE L1 4071 4478 -1662 7 775 268 310 59 3 chr5 24918094 24918198 -127619061 + B1F1 SINE Alu 16 128 -21 7 775 704 276 39 9 chr5 24918267 24918497 -127618762 + L1M2 LINE L1 4793 5029 -1111 7 775 569 226 37 15 chr5 24918515 24918650 -127618609 - B1_Mus1 SINE Alu -9 139 2 7 775 216 387 120 23 chr5 24919153 24919452 -127617807 - L2 LINE L2 -798 2621 2294 7 775 525 193 59 112 chr5 24919773 24919925 -127617334 + B1_Mur4 SINE Alu 7 150 0 7 775 535 295 60 13 chr5 24919970 24920121 -127617138 - RSINE1 SINE B4 -6 159 2 7 775 580 236 184 0 chr5 24921352 24921526 -127615733 - B3 SINE B2 -10 206 1 7 775 313 301 0 70 chr5 24921877 24921977 -127615282 + B1F1 SINE Alu 1 93 -56 7 775 204 228 0 0 chr5 24922000 24922057 -127615202 + G-rich Low_complexity Low_complexity 2 58 0 7 775 303 314 26 79 chr5 24923153 24923267 -127613992 + RSINE1 SINE B4 3 110 -55 7 775 218 136 23 0 chr5 24923286 24923330 -127613929 + GA-rich Low_complexity Low_complexity 3 47 0 7 775 1175 68 0 0 chr5 24923938 24924085 -127613174 + B1_Mus1 SINE Alu 2 148 0 7 775 657 69 0 0 chr5 24924088 24924175 -127613084 + (AGGGGG)n Simple_repeat Simple_repeat 6 92 0 7 775 360 0 0 0 chr5 24924191 24924231 -127613028 + (TAA)n Simple_repeat Simple_repeat 2 41 0 7 775 510 267 227 0 chr5 24924947 24925123 -127612136 + B4A SINE B4 13 228 -64 7 775 439 184 0 0 chr5 24925154 24925230 -127612029 + B1_Mur4 SINE Alu 75 150 0 7 775 254 264 20 112 chr5 24925229 24925244 -127612015 + MT2B LTR ERVL 152 157 -444 7 775 630 248 28 7 chr5 24925244 24925386 -127611873 + B1_Mur2 SINE Alu 3 147 -2 7 775 369 287 43 17 chr5 24925506 24925623 -127611636 + MTD LTR MaLR 7 126 -293 7 775 587 259 166 11 chr5 24925672 24925746 -127611513 + B3 SINE B2 1 95 -121 7 775 3208 34 0 0 chr5 24925746 24926130 -127611129 + L1Md_F2 LINE L1 6195 6578 -4 7 775 587 259 166 11 chr5 24926130 24926242 -127611017 + B3 SINE B2 96 216 0 7 775 435 289 63 32 chr5 24926298 24926504 -127610755 + MTD LTR MaLR 208 405 -14 7 775 1195 123 16 11 chr5 24927280 24927469 -127609790 - B2_Mm2 SINE B2 -5 190 1 7 775 1282 106 6 0 chr5 24927573 24927753 -127609506 + B2_Mm1t SINE B2 1 181 -12 7 775 216 0 0 0 chr5 24927753 24927777 -127609482 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 7 775 489 305 85 0 chr5 24927841 24927959 -127609300 + ID_B1 SINE B4 4 131 -93 7 775 28 38 0 19 chr5 24928195 24928226 -127609033 + AT_rich Low_complexity Low_complexity 1 31 0 7 775 768 220 0 7 chr5 24928226 24928368 -127608891 + B1_Mur4 SINE Alu 5 145 -5 7 775 28 38 0 19 chr5 24928368 24928389 -127608870 + AT_rich Low_complexity Low_complexity 1 21 0 7 775 391 381 60 60 chr5 24928554 24928819 -127608440 + B4A SINE B4 15 279 -13 7 775 1112 29 29 0 chr5 24929615 24929751 -127607508 + B1_Mus1 SINE Alu 1 140 -8 7 775 207 0 0 0 chr5 24929751 24929774 -127607485 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 775 363 316 0 30 chr5 24930002 24930103 -127607156 + B4A SINE B4 1 98 -194 7 775 481 262 51 51 chr5 24930417 24930614 -127606645 + B3A SINE B2 1 197 -1 7 775 248 88 0 0 chr5 24930614 24930648 -127606611 + U2 snRNA snRNA 2 35 -153 7 775 349 254 51 0 chr5 24930709 24930827 -127606432 + L1MC LINE L1 2188 2311 -3835 7 775 534 222 55 7 chr5 24930828 24930973 -127606286 + L1MC LINE L1 5534 5685 -659 7 775 426 269 19 9 chr5 24931119 24931224 -127606035 + B1F SINE Alu 41 146 -3 7 775 211 271 0 0 chr5 24931226 24931274 -127605985 + GA-rich Low_complexity Low_complexity 1 48 0 7 775 492 291 12 35 chr5 24931325 24931463 -127605796 + B3A SINE B2 65 200 -16 7 775 320 244 119 57 chr5 24931490 24931949 -127605310 + L1M2 LINE L1 2632 3175 -2968 7 775 259 45 0 64 chr5 24932142 24932189 -127605070 + (GGGGA)n Simple_repeat Simple_repeat 5 48 0 7 775 286 308 0 45 chr5 24932414 24932526 -127604733 + L1M2 LINE L1 3548 3654 -2489 7 775 9448 150 52 42 chr5 24932642 24936944 -127600315 + Lx3A LINE L1 2394 6974 -7 7 775 3874 148 52 28 chr5 24936963 24937746 -127599513 + Lx6 LINE L1 4988 5793 -1667 7 775 12265 60 4 1 chr5 24939154 24940729 -127596530 + L1Md_F2 LINE L1 4006 5586 -297 7 775 7485 39 48 3 chr5 24940730 24941675 -127595584 + L1Md_F2 LINE L1 5588 6574 -8 7 775 876 235 201 6 chr5 24941682 24941995 -127595264 + Lx6 LINE L1 5798 6171 -1525 7 775 396 0 0 0 chr5 24941995 24942039 -127595220 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 775 553 170 10 0 chr5 24942076 24942176 -127595083 + PB1D9 SINE Alu 20 120 0 7 775 225 0 0 0 chr5 24942176 24942201 -127595058 + (A)n Simple_repeat Simple_repeat 1 25 0 7 775 806 208 145 35 chr5 24942201 24942490 -127594769 + Lx6 LINE L1 7366 7686 -10 7 775 316 307 4 158 chr5 24942494 24942617 -127594642 + L1MA6 LINE L1 4541 4658 -1485 7 775 441 256 93 0 chr5 24942617 24942746 -127594513 + B1_Mur1 SINE Alu 3 143 -6 7 775 316 307 4 158 chr5 24942746 24942862 -127594397 + L1MA6 LINE L1 4659 4743 -1400 7 775 741 23 0 0 chr5 24942966 24943053 -127594206 + (GGAAA)n Simple_repeat Simple_repeat 3 89 0 7 775 283 224 139 30 chr5 24943262 24943428 -127593831 + L1MA6 LINE L1 5114 5297 -846 7 775 250 248 122 43 chr5 24943468 24943607 -127593652 + L1MA6 LINE L1 5408 5557 -743 7 775 11966 84 48 43 chr5 24943632 24946313 -127590946 + L1VL2 LINE L1 285 2981 -634 7 775 315 0 0 0 chr5 24946385 24946420 -127590839 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 775 741 212 147 0 chr5 24946422 24946606 -127590653 + B3 SINE B2 3 213 -3 7 775 743 167 45 0 chr5 24946687 24946819 -127590440 + B1_Mur4 SINE Alu 5 142 -8 7 775 237 213 0 0 chr5 24946823 24946870 -127590389 + GA-rich Low_complexity Low_complexity 3 49 0 7 775 377 230 160 10 chr5 24947008 24947214 -127590045 + L1MA6 LINE L1 5591 5827 -473 7 775 873 281 41 0 chr5 24947227 24947423 -127589836 + B3 SINE B2 8 211 -5 7 775 409 331 14 21 chr5 24947433 24947453 -127589806 + ID_B1 SINE B4 78 219 -3 7 775 415 325 32 0 chr5 24947453 24947576 -127589683 + B1F1 SINE Alu 18 144 -5 7 775 5248 50 3 0 chr5 24947747 24948393 -127588866 - L1Md_F2 LINE L1 -12 6570 5923 7 775 330 138 0 0 chr5 24948454 24948512 -127588747 + (CACG)n Simple_repeat Simple_repeat 1 58 0 7 775 715 242 70 10 chr5 24948539 24948739 -127588520 + B3 SINE B2 2 213 -3 7 775 1387 75 21 0 chr5 24948820 24949008 -127588251 + B2_Mm2 SINE B2 3 194 -1 7 775 231 269 46 46 chr5 24949792 24949901 -127587358 - PB1D10 SINE Alu -6 111 3 7 775 620 271 8 0 chr5 24950265 24950398 -127586861 + RSINE1 SINE B4 3 136 -29 7 775 360 241 196 36 chr5 24950484 24950596 -127586663 + B1_Mur2 SINE Alu 2 131 -18 8 775 21 0 0 0 chr5 24950735 24950756 -127586503 + AT_rich Low_complexity Low_complexity 1 21 0 8 775 187 54 26 26 chr5 24950858 24950896 -127586363 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 8 775 507 311 35 35 chr5 24950948 24951151 -127586108 + MER20 DNA MER1_type 3 205 -14 8 775 327 259 215 85 chr5 24951260 24951408 -127585851 + B3A SINE B2 50 212 -4 8 775 343 308 197 0 chr5 24951746 24951863 -127585396 + RSINE1 SINE B4 12 151 -14 8 775 1424 137 160 30 chr5 24952198 24952498 -127584761 + ORR1C2 LTR MaLR 46 384 0 8 775 705 217 8 23 chr5 24952621 24952753 -127584506 + B3 SINE B2 1 130 -86 8 775 261 0 0 0 chr5 24952786 24952815 -127584444 + (CATA)n Simple_repeat Simple_repeat 4 32 0 8 775 824 274 113 82 chr5 24952947 24953226 -127584033 + ORR1D2 LTR MaLR 1 288 -82 8 775 813 126 27 40 chr5 24953226 24953375 -127583884 - URR1A DNA MER1_type -1 225 79 8 775 496 266 9 0 chr5 24953394 24953507 -127583752 + ORR1D2 LTR MaLR 257 370 0 8 775 325 299 30 71 chr5 24953536 24953705 -127583554 + RSINE1 SINE B4 4 165 0 8 775 21 0 0 0 chr5 24953794 24953815 -127583444 + AT_rich Low_complexity Low_complexity 1 21 0 8 775 261 0 0 0 chr5 24953965 24953994 -127583265 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 775 354 314 23 76 chr5 24954042 24954214 -127583045 + RSINE1 SINE B4 3 165 0 8 775 233 289 198 74 chr5 24954339 24954556 -127582703 + MT2A LTR ERVL 191 434 -99 8 775 468 0 0 0 chr5 24954862 24954914 -127582345 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 775 192 222 0 0 chr5 24955099 24955135 -127582124 + MIRb SINE MIR 134 169 -99 8 775 771 260 58 19 chr5 24955278 24955486 -127581773 - B3 SINE B2 0 216 1 8 775 22 0 0 0 chr5 24955534 24955556 -127581703 + AT_rich Low_complexity Low_complexity 1 22 0 8 775 495 0 0 0 chr5 24955639 24955694 -127581565 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 8 775 29 0 0 0 chr5 24955716 24955745 -127581514 + GC_rich Low_complexity Low_complexity 1 29 0 8 775 422 246 214 8 chr5 24955769 24955900 -127581359 - B3A SINE B2 -39 159 2 8 775 495 0 0 0 chr5 24956899 24956954 -127580305 + (GA)n Simple_repeat Simple_repeat 2 56 0 8 775 191 333 30 0 chr5 24957116 24957182 -127580077 + L2b LINE L2 3019 3086 -289 8 775 403 244 0 17 chr5 24957328 24957445 -127579814 + Lx7 LINE L1 7563 7677 -19 8 775 819 164 22 8 chr5 24957466 24957615 -127579644 + B2_Mm2 SINE B2 2 163 -35 8 775 180 0 0 0 chr5 24957746 24957766 -127579493 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 775 484 220 70 44 chr5 24957776 24957890 -127579369 - B1_Mm SINE Alu -28 119 3 8 775 256 328 58 51 chr5 24957890 24957926 -127579333 - MT2B LTR ERVL -439 162 126 8 775 23 78 0 0 chr5 24957950 24958001 -127579258 + AT_rich Low_complexity Low_complexity 1 51 0 8 775 294 280 192 0 chr5 24958920 24959045 -127578214 + B1F2 SINE Alu 1 149 0 8 775 214 328 43 29 chr5 24959053 24959122 -127578137 + RSINE1 SINE B4 11 80 -85 8 775 227 324 72 14 chr5 24959220 24959289 -127577970 + B4 SINE B4 214 286 -6 8 775 213 260 143 0 chr5 24959447 24959524 -127577735 + B1F1 SINE Alu 18 105 -44 8 775 555 164 325 25 chr5 24959605 24959768 -127577491 - B3 SINE B2 -3 213 2 8 775 262 376 0 0 chr5 24959773 24959882 -127577377 + PB1D10 SINE Alu 2 110 -7 8 775 454 306 9 0 chr5 24959915 24959978 -127577281 + ID SINE ID 18 81 -143 8 775 226 336 119 18 chr5 24959978 24960087 -127577172 + PB1D7 SINE Alu 1 120 0 8 775 473 243 35 18 chr5 24960251 24960364 -127576895 + PB1D9 SINE Alu 1 115 -5 8 775 308 284 0 13 chr5 24960568 24960643 -127576616 - B3 SINE B2 -8 208 135 8 775 390 233 92 77 chr5 24960594 24960633 -127576626 - MT2B LTR ERVL -316 285 185 8 775 602 49 12 0 chr5 24960633 24960714 -127576545 - B1_Mus2 SINE Alu -65 82 1 8 775 233 261 0 42 chr5 24960714 24960778 -127576481 + MTEb LTR MaLR 311 371 -8 8 775 278 213 37 74 chr5 24960822 24960903 -127576356 + MLT1B LTR MaLR 41 118 -272 8 775 829 212 33 33 chr5 24960937 24961147 -127576112 + B3 SINE B2 2 211 -5 8 775 231 216 19 19 chr5 24961181 24961205 -127576054 + polypurine Low_complexity Low_complexity 2 26 0 8 775 1158 122 0 0 chr5 24961205 24961385 -127575874 + (GA)n Simple_repeat Simple_repeat 1 180 0 8 775 231 216 19 19 chr5 24961385 24961412 -127575847 + polypurine Low_complexity Low_complexity 27 53 0 8 775 664 258 0 52 chr5 24961415 24961587 -127575672 + RSINE1 SINE B4 1 163 -2 8 775 472 273 65 65 chr5 24961619 24961803 -127575456 + MLT1B LTR MaLR 183 366 -24 8 775 180 217 213 21 chr5 24962044 24962138 -127575121 - MIRc SINE MIR -118 150 39 8 775 641 276 73 17 chr5 24963026 24963203 -127574056 + B3A SINE B2 1 187 -11 8 775 955 118 0 0 chr5 24963338 24963473 -127573786 + B1_Mus1 SINE Alu 1 135 -13 8 775 480 239 97 0 chr5 24963473 24963607 -127573652 + B1_Mur4 SINE Alu 1 147 -3 8 775 378 0 0 0 chr5 24964101 24964143 -127573116 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 775 238 267 0 0 chr5 24964687 24964732 -127572527 - ID4_ SINE ID -4 79 35 8 775 225 274 266 45 chr5 24964749 24964948 -127572311 + L2 LINE L2 2822 3064 -355 8 775 667 244 16 0 chr5 24965524 24965651 -127571608 + ID_B1 SINE B4 6 134 -90 8 775 399 216 7 171 chr5 24965656 24965796 -127571463 + B4 SINE B4 9 125 -167 8 775 1936 123 60 0 chr5 24965830 24966131 -127571128 + ORR1A2 LTR MaLR 9 327 0 8 775 189 121 0 0 chr5 24966145 24966178 -127571081 + (GGAAA)n Simple_repeat Simple_repeat 3 35 0 8 775 326 174 349 132 chr5 24966178 24966330 -127570929 + B3A SINE B2 3 187 -11 8 775 368 244 165 8 chr5 24966414 24966529 -127570730 - B4A SINE B4 -95 129 1 8 775 317 198 78 59 chr5 24966559 24966661 -127570598 - PB1D7 SINE Alu -16 104 1 8 775 4429 162 87 79 chr5 24966916 24967810 -127569449 + RMER19B LTR ERVK 1 901 -1 8 775 478 264 57 0 chr5 24967955 24968061 -127569198 - RSINE1 SINE B4 -22 143 32 8 775 229 216 0 73 chr5 24968064 24968119 -127569140 - PB1D10 SINE Alu -66 51 1 8 775 270 309 29 0 chr5 24968158 24968226 -127569033 - ID4 SINE ID -10 73 4 8 775 360 319 0 11 chr5 24968362 24968457 -127568802 + B4A SINE B4 2 95 -197 8 775 183 42 0 0 chr5 24968733 24968757 -127568502 + (CAA)n Simple_repeat Simple_repeat 3 26 0 8 775 380 279 80 18 chr5 24968793 24968906 -127568353 + B4A SINE B4 138 257 -35 8 775 1239 56 0 24 chr5 24968992 24969156 -127568103 + B2_Mm2 SINE B2 2 161 -34 8 775 231 36 0 0 chr5 24969158 24969186 -127568073 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 8 775 180 0 0 0 chr5 24969189 24969209 -127568050 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 775 1095 45 0 0 chr5 24969209 24969342 -127567917 - B1_Mus2 SINE Alu -13 134 2 8 775 22 0 0 0 chr5 24969342 24969364 -127567895 + AT_rich Low_complexity Low_complexity 1 22 0 8 775 840 255 21 5 chr5 24969604 24969797 -127567462 + B3A SINE B2 1 196 -2 8 775 1178 198 0 0 chr5 24970120 24970327 -127566932 + B3 SINE B2 4 210 -6 8 775 269 266 16 0 chr5 24970610 24970674 -127566585 + RSINE1 SINE B4 98 162 -3 8 775 288 0 0 0 chr5 24970722 24970754 -127566505 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 775 701 220 104 31 chr5 24970834 24971026 -127566233 - B3 SINE B2 -10 206 1 8 775 1183 262 49 30 chr5 24971061 24971431 -127565828 + MTE2a LTR MaLR 3 379 0 8 775 189 74 0 0 chr5 24971680 24971707 -127565552 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 775 212 316 26 13 chr5 24971750 24971827 -127565432 - ID4_ SINE ID -4 79 2 8 775 442 218 89 0 chr5 24971995 24972096 -127565163 + B1_Mur1 SINE Alu 34 143 -6 8 775 1016 71 50 0 chr5 24972159 24972299 -127564960 + B1_Mus2 SINE Alu 1 147 0 8 775 475 106 46 0 chr5 24972783 24972877 -127564382 + B1_Mur3 SINE Alu 28 137 -12 8 775 432 250 0 122 chr5 24973050 24973173 -127564086 + PB1D9 SINE Alu 10 117 -3 8 775 722 243 102 36 chr5 24973335 24973531 -127563728 - B3 SINE B2 -6 210 2 8 775 24 0 0 0 chr5 24973559 24973583 -127563676 + AT_rich Low_complexity Low_complexity 1 24 0 8 775 636 275 60 41 chr5 24973814 24974083 -127563176 + B4A SINE B4 1 274 -18 8 775 1094 77 0 0 chr5 24974241 24974384 -127562875 + B1_Mus1 SINE Alu 2 144 -4 8 775 28 29 0 0 chr5 24974385 24974420 -127562839 + AT_rich Low_complexity Low_complexity 1 35 0 8 775 183 80 0 0 chr5 24974437 24974462 -127562797 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 8 775 29 28 0 0 chr5 24974471 24974507 -127562752 + AT_rich Low_complexity Low_complexity 1 36 0 8 775 379 310 26 9 chr5 24974510 24974624 -127562635 - ID_B1 SINE B4 -1 223 108 8 775 257 269 151 19 chr5 24974701 24974807 -127562452 + PB1D9 SINE Alu 1 120 0 8 775 645 284 83 5 chr5 24974895 24975100 -127562159 + ID_B1 SINE B4 2 222 -2 8 775 1299 63 91 0 chr5 24975142 24975161 -127562098 - B2_Mm2 SINE B2 -2 193 175 8 775 279 0 0 0 chr5 24975161 24975192 -127562067 + (TTA)n Simple_repeat Simple_repeat 3 33 0 8 775 1299 63 91 0 chr5 24975192 24975347 -127561912 - B2_Mm2 SINE B2 -21 174 4 8 775 304 192 39 73 chr5 24975361 24975455 -127561804 - B1_Mm SINE Alu -6 114 22 8 775 855 170 0 34 chr5 24975648 24975794 -127561465 - B1_Mus1 SINE Alu -1 147 7 9 775 582 232 92 0 chr5 24975899 24976027 -127561232 + B4A SINE B4 91 231 -61 9 775 388 328 174 15 chr5 24976027 24976228 -127561031 + B4A SINE B4 1 233 -59 9 775 315 0 0 0 chr5 24976285 24976320 -127560939 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 775 1215 80 34 28 chr5 24976393 24976572 -127560687 + B2_Mm2 SINE B2 1 180 -15 9 775 284 188 92 15 chr5 24976638 24976703 -127560556 + B1_Mur2 SINE Alu 66 135 -14 9 775 297 0 0 0 chr5 24976703 24976736 -127560523 + (CATA)n Simple_repeat Simple_repeat 3 35 0 9 775 39 0 0 0 chr5 24976758 24976797 -127560462 + AT_rich Low_complexity Low_complexity 1 39 0 9 775 742 238 75 0 chr5 24977055 24977215 -127560044 - B3 SINE B2 -44 172 1 9 775 474 261 35 21 chr5 24977260 24977401 -127559858 + B1F SINE Alu 2 144 -5 9 775 180 77 0 0 chr5 24977528 24977554 -127559705 + (CAG)n Simple_repeat Simple_repeat 1 26 0 9 775 500 147 237 21 chr5 24977574 24977671 -127559588 + B3 SINE B2 13 130 -86 9 775 31 0 0 0 chr5 24977700 24977731 -127559528 + AT_rich Low_complexity Low_complexity 1 31 0 9 775 678 188 23 15 chr5 24977756 24977886 -127559373 + B1_Mur1 SINE Alu 19 149 0 9 775 237 381 0 0 chr5 24978005 24978102 -127559157 + GA-rich Low_complexity Low_complexity 2 98 0 9 775 180 0 0 0 chr5 24978345 24978365 -127558894 + (A)n Simple_repeat Simple_repeat 1 20 0 9 775 23 33 0 0 chr5 24979284 24979314 -127557945 + AT_rich Low_complexity Low_complexity 1 30 0 9 775 334 292 13 87 chr5 24979556 24979706 -127557553 + B1_Mur1 SINE Alu 5 143 -6 9 775 220 215 43 58 chr5 24979769 24979838 -127557421 + B3A SINE B2 86 153 -45 9 775 332 256 103 11 chr5 24979945 24980032 -127557227 + RSINE1 SINE B4 11 105 -60 9 775 26 0 0 0 chr5 24980059 24980085 -127557174 + AT_rich Low_complexity Low_complexity 1 26 0 9 775 23 54 0 0 chr5 24980493 24980530 -127556729 + AT_rich Low_complexity Low_complexity 1 37 0 9 775 535 291 35 28 chr5 24980533 24980678 -127556581 + RSINE1 SINE B4 3 148 -17 9 775 28 0 0 0 chr5 24980678 24980706 -127556553 + AT_rich Low_complexity Low_complexity 1 28 0 9 775 1187 68 0 0 chr5 24980729 24980876 -127556383 + B1_Mm SINE Alu 1 147 0 9 775 255 133 0 0 chr5 24980885 24980930 -127556329 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 775 1930 272 129 31 chr5 24981118 24981955 -127555304 + Lx8 LINE L1 6331 7249 -224 9 775 3552 13 2 0 chr5 24982102 24982497 -127554762 - MTA_Mm LTR MaLR 0 396 1 9 775 635 147 3 78 chr5 24982515 24982660 -127554599 + B1_Mur4 SINE Alu 13 150 0 9 775 631 112 19 0 chr5 24982692 24982799 -127554460 + (GGGA)n Simple_repeat Simple_repeat 4 112 0 9 775 1071 201 8 93 chr5 24982860 24983096 -127554163 + B3 SINE B2 1 216 0 9 775 813 161 15 0 chr5 24983116 24983253 -127554006 + B1_Mur2 SINE Alu 6 144 -5 9 775 352 273 182 0 chr5 24983275 24983407 -127553852 + RSINE1 SINE B4 10 165 0 9 775 242 212 70 70 chr5 24983475 24983546 -127553713 + RSINE1 SINE B4 91 161 -4 9 775 782 174 14 7 chr5 24983640 24983779 -127553480 + B1_Mur2 SINE Alu 5 144 -5 9 775 342 0 0 0 chr5 24983789 24983827 -127553432 + (CATA)n Simple_repeat Simple_repeat 2 39 0 9 775 1106 102 0 0 chr5 24983844 24983991 -127553268 - B1_Mus1 SINE Alu -1 147 1 9 775 28 0 0 0 chr5 24983995 24984023 -127553236 + AT_rich Low_complexity Low_complexity 1 28 0 9 775 510 174 197 47 chr5 24984024 24984151 -127553108 + B1_Mur2 SINE Alu 3 148 -1 9 775 1399 95 0 5 chr5 24984234 24984425 -127552834 + B2_Mm2 SINE B2 1 190 -5 9 775 959 57 0 0 chr5 24984510 24984633 -127552626 - B1_Mus1 SINE Alu -25 123 1 9 775 418 279 28 37 chr5 24984939 24985047 -127552212 + RSINE1 SINE B4 4 110 -55 9 775 363 217 0 0 chr5 24985071 24985140 -127552119 + B1_Mur3 SINE Alu 1 69 -80 9 775 1580 0 0 5 chr5 24985144 24985352 -127551907 + (GGGAGA)n Simple_repeat Simple_repeat 1 207 0 9 775 219 114 0 0 chr5 24985359 24985394 -127551865 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 9 775 669 142 115 69 chr5 24985560 24985734 -127551525 + B2_Mm2 SINE B2 3 184 -11 9 775 475 290 86 40 chr5 24985960 24986111 -127551148 - RSINE1 SINE B4 -6 159 2 9 775 414 267 113 27 chr5 24986157 24986307 -127550952 - RSINE1 SINE B4 0 165 3 9 775 920 128 23 0 chr5 24986362 24986495 -127550764 - B1_Mur3 SINE Alu -13 136 1 9 775 608 88 22 0 chr5 24986667 24986758 -127550501 - PB1D9 SINE Alu 0 120 28 9 775 549 145 259 30 chr5 24986818 24986953 -127550306 + B2_Mm2 SINE B2 3 168 -27 9 775 659 167 17 9 chr5 24986958 24987073 -127550186 + PB1D9 SINE Alu 1 116 -4 9 775 257 242 272 8 chr5 24987538 24987663 -127549596 - MIR SINE MIR -24 238 81 9 775 183 184 0 0 chr5 24987929 24987967 -127549292 + CT-rich Low_complexity Low_complexity 3 40 0 9 775 878 175 0 0 chr5 24987994 24988131 -127549128 - B1_Mur4 SINE Alu -13 137 1 9 775 332 243 15 0 chr5 24988217 24988294 -127548965 - ID4_ SINE ID -66 86 9 9 775 420 208 122 65 chr5 24988502 24988641 -127548618 + B1_Mus1 SINE Alu 1 147 -1 9 775 376 278 68 62 chr5 24988647 24988839 -127548420 + L1M4 LINE L1 4155 4347 -1799 9 775 711 211 0 87 chr5 24988873 24989034 -127548225 + B1_Mur2 SINE Alu 1 147 -2 9 775 1227 48 0 0 chr5 24989039 24989186 -127548073 + B1_Mus1 SINE Alu 2 148 0 9 775 297 75 0 0 chr5 24989186 24989226 -127548033 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 9 775 471 193 0 0 chr5 24989226 24989309 -127547950 + B3 SINE B2 131 213 -3 9 775 279 231 18 9 chr5 24989327 24989436 -127547823 + GA-rich Low_complexity Low_complexity 2 111 0 9 775 251 211 38 38 chr5 24989448 24989527 -127547732 + MT2B LTR ERVL 163 241 -360 9 775 293 247 172 0 chr5 24989460 24989553 -127547706 + PB1D9 SINE Alu 12 120 0 9 775 429 171 32 54 chr5 24989577 24989670 -127547589 - B1_Mus2 SINE Alu 0 147 57 9 775 1385 80 21 0 chr5 24989827 24990014 -127547245 + B2_Mm2 SINE B2 1 191 -4 9 775 783 0 0 0 chr5 24990066 24990153 -127547106 + (GGAAA)n Simple_repeat Simple_repeat 3 89 0 9 775 294 258 97 58 chr5 24990679 24990782 -127546477 + PB1D7 SINE Alu 1 107 -13 9 775 601 184 7 14 chr5 24990783 24990926 -127546333 - RMER1B Other Other 0 1066 925 9 775 290 257 43 26 chr5 24991005 24991121 -127546138 - RMER1A Other Other -894 136 19 9 775 693 140 26 9 chr5 24991183 24991298 -127545961 + B1_Mur4 SINE Alu 34 150 0 9 775 289 164 0 76 chr5 24991333 24991399 -127545860 + B2_Mm2 SINE B2 2 62 -133 9 775 270 0 0 0 chr5 24991549 24991579 -127545680 + (A)n Simple_repeat Simple_repeat 1 30 0 9 775 512 220 44 22 chr5 24991646 24991781 -127545478 - B1F2 SINE Alu -1 148 11 9 775 686 247 24 37 chr5 24991923 24992087 -127545172 + RSINE1 SINE B4 4 165 0 9 775 791 101 8 8 chr5 24992099 24992219 -127545040 + B1_Mus1 SINE Alu 2 121 -27 9 775 26 0 0 0 chr5 24992219 24992245 -127545014 + AT_rich Low_complexity Low_complexity 1 26 0 9 775 763 283 51 68 chr5 24992340 24992533 -127544726 - B3 SINE B2 -1 215 18 9 775 192 77 0 0 chr5 24992533 24992559 -127544700 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 775 341 198 36 24 chr5 24992575 24992658 -127544601 - PB1D9 SINE Alu -7 113 30 9 775 428 283 0 28 chr5 24992962 24993071 -127544188 + B1_Mur2 SINE Alu 9 114 -35 9 775 212 243 25 75 chr5 24993073 24993153 -127544106 - MIRc SINE MIR -148 120 45 9 775 598 236 192 22 chr5 24993317 24993499 -127543760 - ID_B1 SINE B4 -10 214 2 9 775 420 231 123 71 chr5 24993742 24993896 -127543363 - RSINE1 SINE B4 0 165 4 9 775 253 324 132 40 chr5 24993930 24994081 -127543178 - MLT1H2 LTR MaLR -54 495 301 9 775 512 192 2 2 chr5 24994341 24994441 -127542818 - B1_Mur4 SINE Alu -49 100 1 9 775 410 174 0 12 chr5 24994441 24994528 -127542731 - L1_Mur3 LINE L1 -1140 4740 4658 9 775 265 301 51 51 chr5 24994563 24994661 -127542598 - ID_B1 SINE B4 -41 183 86 9 775 340 213 0 16 chr5 24994604 24994666 -127542593 - PB1D9 SINE Alu -59 61 1 9 775 471 220 98 27 chr5 24994695 24994807 -127542452 + B1_Mm SINE Alu 1 120 -27 9 775 183 80 0 0 chr5 24994807 24994832 -127542427 + (TGG)n Simple_repeat Simple_repeat 2 26 0 9 775 356 297 118 94 chr5 24995025 24995113 -127542146 + ID_B1 SINE B4 8 206 -18 9 775 565 153 85 59 chr5 24995113 24995231 -127542028 + B1_Mus2 SINE Alu 21 141 -6 9 775 1119 96 0 0 chr5 24995450 24995596 -127541663 + B1_Mus2 SINE Alu 1 146 -1 9 775 269 174 0 28 chr5 24995727 24995798 -127541461 + (TAAA)n Simple_repeat Simple_repeat 4 72 0 9 775 539 238 38 38 chr5 24995896 24996027 -127541232 + B1_Mur1 SINE Alu 3 133 -16 9 775 24 32 0 0 chr5 24996087 24996118 -127541141 + AT_rich Low_complexity Low_complexity 1 31 0 9 775 551 176 99 27 chr5 24996156 24996267 -127540992 + PB1D9 SINE Alu 2 120 0 9 775 216 189 0 0 chr5 24996907 24996944 -127540315 + PB1D9 SINE Alu 52 88 -32 9 775 194 395 35 0 chr5 24997263 24997349 -127539910 + L2b LINE L2 3072 3160 -215 9 775 353 296 99 0 chr5 24997456 24997587 -127539672 + B1_Mur3 SINE Alu 1 149 0 9 775 366 232 92 59 chr5 24997596 24997703 -127539556 + RSINE1 SINE B4 3 125 -40 1 775 452 226 41 65 chr5 24997703 24997715 -127539544 + B2_Mm1t SINE B2 6 13 -180 1 775 405 0 0 0 chr5 24997715 24997760 -127539499 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 775 702 208 95 25 chr5 24997760 24997918 -127539341 + B3 SINE B2 14 182 -34 1 775 212 240 40 0 chr5 24998148 24998198 -127539061 + B3A SINE B2 3 54 -144 1 775 302 253 0 92 chr5 24998157 24998244 -127539015 + 4.5SRNA scRNA scRNA 10 88 -6 1 775 533 221 10 0 chr5 24998190 24998294 -127538965 + B1_Mur1 SINE Alu 39 143 -6 1 775 36 40 0 0 chr5 24998294 24998344 -127538915 + AT_rich Low_complexity Low_complexity 1 50 0 1 775 809 160 0 15 chr5 24998368 24998501 -127538758 + B1_Mur3 SINE Alu 13 143 -6 1 775 474 65 0 0 chr5 24998501 24998563 -127538696 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 775 396 0 0 0 chr5 24999130 24999174 -127538085 + (CTTG)n Simple_repeat Simple_repeat 2 45 0 1 775 679 221 15 15 chr5 24999176 24999309 -127537950 - B1_Mur1 SINE Alu -8 141 9 1 775 430 227 23 0 chr5 24999365 24999453 -127537806 - B3A SINE B2 -104 94 5 1 775 248 77 0 25 chr5 25000026 25000066 -127537193 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 1 775 531 276 49 7 chr5 25000149 25000291 -127536968 + B1F SINE Alu 2 149 0 2 775 294 220 205 27 chr5 25000797 25000909 -127536350 + B1_Mur3 SINE Alu 1 132 -17 3 775 239 104 0 20 chr5 25000910 25000959 -127536300 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 4 775 234 0 0 0 chr5 25000973 25000999 -127536260 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 775 195 42 0 0 chr5 25000999 25001022 -127536237 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 775 384 22 0 0 chr5 25001225 25001270 -127535989 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 775 22 35 0 0 chr5 25001352 25001381 -127535878 + AT_rich Low_complexity Low_complexity 1 29 0 8 775 1117 74 0 39 chr5 25001475 25001629 -127535630 + B1_Mus1 SINE Alu 1 148 0 9 775 674 164 36 79 chr5 25001693 25001832 -127535427 + B1_Mur1 SINE Alu 4 136 -13 1 775 189 0 0 0 chr5 25001832 25001853 -127535406 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 1 775 180 0 0 0 chr5 25002190 25002210 -127535049 + (A)n Simple_repeat Simple_repeat 1 20 0 1 775 611 136 51 165 chr5 25002560 25002718 -127534541 - B1_Mus2 SINE Alu 0 147 8 1 775 362 201 57 182 chr5 25002718 25002736 -127534523 - ID_B1 SINE B4 0 224 71 1 775 44 91 0 0 chr5 25004063 25004184 -127533075 + GC_rich Low_complexity Low_complexity 1 121 0 1 775 216 162 0 0 chr5 25004422 25004459 -127532800 + (CCG)n Simple_repeat Simple_repeat 3 39 0 1 775 180 0 0 0 chr5 25004509 25004529 -127532730 + (CAG)n Simple_repeat Simple_repeat 2 21 0 1 775 30 59 0 0 chr5 25004581 25004632 -127532627 + GC_rich Low_complexity Low_complexity 1 51 0 1 775 234 144 57 9 chr5 25004636 25004741 -127532518 + (CGGGG)n Simple_repeat Simple_repeat 4 113 0 1 775 32 75 0 0 chr5 25004749 25004816 -127532443 + GC_rich Low_complexity Low_complexity 1 67 0 2 775 183 42 0 0 chr5 25004843 25004867 -127532392 + (CCGGG)n Simple_repeat Simple_repeat 2 25 0 2 775 248 267 0 16 chr5 25006536 25006597 -127530662 - ID4_ SINE ID -19 64 5 2 775 713 251 78 0 chr5 25006634 25006825 -127530434 - B3 SINE B2 -10 206 1 2 775 651 204 49 14 chr5 25006959 25007103 -127530156 + B1_Mur1 SINE Alu 1 149 0 2 775 498 292 13 34 chr5 25007221 25007370 -127529889 + ID_B1 SINE B4 78 223 -1 2 775 517 282 71 28 chr5 25007376 25007558 -127529701 + B3A SINE B2 3 192 -6 2 775 869 191 52 17 chr5 25007596 25007782 -127529477 + B3 SINE B2 16 191 -4 2 775 716 213 8 0 chr5 25007800 25007927 -127529332 + B1_Mur4 SINE Alu 1 128 -22 2 775 428 227 41 8 chr5 25008120 25008224 -127529035 + B1_Mus1 SINE Alu 1 113 -34 2 775 252 305 28 105 chr5 25008224 25008256 -127529003 + MT2B2 LTR ERVL 177 288 -296 3 775 593 182 91 0 chr5 25008269 25008379 -127528880 + PB1D9 SINE Alu 1 120 0 3 775 22 35 0 0 chr5 25008674 25008703 -127528556 + AT_rich Low_complexity Low_complexity 1 29 0 3 775 292 275 14 11 chr5 25009012 25009106 -127528153 - ID4 SINE ID -49 103 10 3 775 265 243 68 0 chr5 25009144 25009218 -127528041 + ID4 SINE ID 4 82 -1 3 775 954 227 15 5 chr5 25009333 25009537 -127527722 + B3 SINE B2 2 207 -9 3 775 661 198 23 38 chr5 25009571 25009702 -127527557 - B1_Mur2 SINE Alu -12 137 9 3 775 2162 143 8 75 chr5 25009703 25010103 -127527156 + RLTR24 LTR ERV1 1 373 -156 3 775 722 130 14 71 chr5 25010103 25010244 -127527015 + B1_Mus2 SINE Alu 2 134 -13 3 775 1106 145 6 0 chr5 25010194 25010366 -127526893 + RLTR24 LTR ERV1 357 529 0 3 775 663 118 386 0 chr5 25010444 25010597 -127526662 + B3 SINE B2 5 216 0 3 775 21 57 0 0 chr5 25010597 25010632 -127526627 + AT_rich Low_complexity Low_complexity 1 35 0 4 775 288 229 105 85 chr5 25010960 25011113 -127526146 - MLT1B LTR MaLR -170 220 65 4 775 1219 68 0 0 chr5 25011125 25011273 -127525986 - B1_Mus1 SINE Alu 0 148 1 4 775 362 246 65 65 chr5 25011489 25011628 -127525631 - B1F2 SINE Alu 0 149 11 4 775 769 276 29 0 chr5 25012019 25012193 -127525066 + B3A SINE B2 1 179 -19 4 775 591 190 144 17 chr5 25012235 25012353 -127524906 - B1_Mus1 SINE Alu 0 148 16 4 775 33 0 0 0 chr5 25012353 25012386 -127524873 + AT_rich Low_complexity Low_complexity 1 33 0 4 775 275 75 23 70 chr5 25012386 25012472 -127524787 + (TAAA)n Simple_repeat Simple_repeat 2 83 0 4 775 525 146 12 0 chr5 25012868 25012950 -127524309 - B1_Mur1 SINE Alu -27 122 40 4 775 452 282 39 46 chr5 25012964 25013094 -127524165 - ID_B1 SINE B4 -3 221 93 4 775 1017 215 96 36 chr5 25013127 25013407 -127523852 - RCHARR1 DNA MER1_type -488 486 190 5 775 809 238 47 16 chr5 25013441 25013633 -127523626 + B3A SINE B2 1 198 0 5 775 862 113 32 1 chr5 25013719 25013844 -127523415 + B1_Mur4 SINE Alu 6 133 -17 5 775 384 71 0 0 chr5 25013844 25013900 -127523359 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 5 775 1111 73 0 0 chr5 25013902 25014038 -127523221 - B1_Mus1 SINE Alu -12 136 1 5 775 841 124 13 99 chr5 25014038 25014065 -127523194 + B1_Mus2 SINE Alu 131 147 0 5 775 590 196 13 9 chr5 25014097 25014211 -127523048 - B3 SINE B2 -67 126 1 5 775 512 188 100 113 chr5 25014240 25014390 -127522869 - B1_Mur2 SINE Alu 0 149 2 5 775 21 26 0 26 chr5 25014394 25014412 -127522847 + AT_rich Low_complexity Low_complexity 1 18 0 5 775 1161 75 0 13 chr5 25014412 25014561 -127522698 + B1_Mus1 SINE Alu 1 147 -1 5 775 21 26 0 26 chr5 25014561 25014581 -127522678 + AT_rich Low_complexity Low_complexity 1 20 0 5 775 3278 21 0 13 chr5 25014596 25014981 -127522278 - L1Md_F2 LINE L1 -1 6581 6202 6 775 858 184 128 11 chr5 25015009 25015196 -127522063 - B3 SINE B2 -6 210 2 6 775 365 229 196 10 chr5 25015208 25015305 -127521954 - RCHARR1 DNA MER1_type -857 117 3 5 775 505 219 34 81 chr5 25015452 25015601 -127521658 + B1F1 SINE Alu 8 149 0 6 775 456 243 90 0 chr5 25015696 25015807 -127521452 + ID_B1 SINE B4 96 216 -8 6 775 935 233 20 0 chr5 25015842 25016044 -127521215 - B3 SINE B2 -10 206 1 6 775 195 129 0 0 chr5 25016052 25016083 -127521176 + (CTTG)n Simple_repeat Simple_repeat 1 31 0 6 775 926 229 42 2 chr5 25016104 25016301 -127520958 + B3A SINE B2 1 196 -20 6 775 616 256 31 43 chr5 25016301 25016464 -127520795 + RSINE1 SINE B4 3 163 -2 6 775 797 234 32 55 chr5 25016464 25016483 -127520776 + B3 SINE B2 197 212 -4 6 775 295 156 44 35 chr5 25016494 25016607 -127520652 + (TA)n Simple_repeat Simple_repeat 2 115 0 6 775 683 245 6 47 chr5 25016682 25016853 -127520406 + U1 snRNA snRNA 1 164 -1 6 775 545 337 12 0 chr5 25017142 25017220 -127520039 + ID SINE ID 2 81 -143 7 775 293 385 28 0 chr5 25017220 25017329 -127519930 + PB1D7 SINE Alu 1 112 -8 7 775 651 265 15 0 chr5 25017333 25017465 -127519794 + RSINE1 SINE B4 1 134 -31 7 775 23 33 0 0 chr5 25017477 25017507 -127519752 + AT_rich Low_complexity Low_complexity 1 30 0 7 775 807 222 211 23 chr5 25017599 25017921 -127519338 - MTD LTR MaLR 0 419 13 7 775 680 218 13 26 chr5 25017934 25018069 -127519190 + B1_Mur2 SINE Alu 1 136 -13 7 775 243 0 0 0 chr5 25018069 25018096 -127519163 + (CAAAC)n Simple_repeat Simple_repeat 1 27 0 7 775 680 218 13 26 chr5 25018096 25018111 -127519148 + B1_Mur2 SINE Alu 137 149 0 7 775 974 35 14 21 chr5 25018400 25018545 -127518714 + (TAGA)n Simple_repeat Simple_repeat 4 147 0 7 775 380 208 78 0 chr5 25018551 25018628 -127518631 - PB1D7 SINE Alu -32 88 6 7 775 434 307 32 122 chr5 25018644 25018833 -127518426 - B3A SINE B2 -9 189 18 7 775 543 250 94 0 chr5 25019276 25019404 -127517855 - B1F2 SINE Alu -8 141 2 8 775 740 203 49 0 chr5 25019406 25019529 -127517730 - B1_Mur1 SINE Alu -11 138 10 8 775 3625 162 83 2 chr5 25019530 25020027 -127517232 + RMER1B Other Other 401 913 -153 8 775 198 0 0 0 chr5 25020027 25020049 -127517210 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 775 3625 162 83 2 chr5 25020049 25020140 -127517119 + RMER1B Other Other 914 1035 -31 8 775 919 147 0 27 chr5 25020173 25020320 -127516939 + B1_Mur4 SINE Alu 6 148 -2 8 775 1361 66 22 0 chr5 25020334 25020516 -127516743 + B2_Mm1a SINE B2 2 187 -6 8 775 1097 65 0 7 chr5 25020604 25020744 -127516515 + B1_Mus2 SINE Alu 3 141 -6 8 775 216 0 0 0 chr5 25020744 25020768 -127516491 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 8 775 266 352 111 8 chr5 25020777 25020903 -127516356 - B3A SINE B2 -13 185 47 8 775 312 267 48 19 chr5 25020905 25021008 -127516251 - PB1D7 SINE Alu 0 120 15 8 775 460 256 24 47 chr5 25021042 25021169 -127516090 - B1F2 SINE Alu 0 149 26 9 775 312 298 73 21 chr5 25021230 25021326 -127515933 - PB1D7 SINE Alu -8 112 12 9 775 751 172 104 0 chr5 25021391 25021525 -127515734 - B1_Mur4 SINE Alu 0 150 3 9 775 400 181 0 14 chr5 25021544 25021617 -127515642 - L1_Mur3 LINE L1 -1137 4743 4672 9 775 219 125 0 0 chr5 25021627 25021667 -127515592 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 9 775 411 21 0 0 chr5 25023891 25023939 -127513320 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 9 775 717 146 105 23 chr5 25023997 25024130 -127513129 - B1_Mur3 SINE Alu 0 149 6 9 775 327 78 0 0 chr5 25024140 25024191 -127513068 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 9 775 727 232 21 18 chr5 25024196 25024342 -127512917 - B3A SINE B2 0 216 72 9 775 303 294 84 111 chr5 25024342 25024568 -127512691 + ID_B1 SINE B4 4 223 -1 9 775 246 276 0 0 chr5 25024571 25024629 -127512630 + ID_B1 SINE B4 111 168 -56 1 775 392 87 29 0 chr5 25025100 25025169 -127512090 + (TATG)n Simple_repeat Simple_repeat 2 72 0 1 775 718 200 21 0 chr5 25025169 25025309 -127511950 - B1_Mur4 SINE Alu -7 143 1 1 775 644 266 57 7 chr5 25025373 25025513 -127511746 + RSINE1 SINE B4 3 149 -16 1 775 189 107 0 0 chr5 25025527 25025555 -127511704 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 775 258 240 20 0 chr5 25026829 25026879 -127510380 + B1F2 SINE Alu 57 107 -42 1 775 1164 83 111 23 chr5 25026928 25027100 -127510159 - B2_Mm2 SINE B2 -8 187 1 1 775 1274 285 160 19 chr5 25027102 25027696 -127509563 + Lx8 LINE L1 6632 7309 -164 1 775 281 179 31 125 chr5 25027725 25027821 -127509438 + MT2B LTR ERVL 156 242 -359 1 775 650 165 115 23 chr5 25027742 25027872 -127509387 + B1_Mur4 SINE Alu 9 150 0 1 775 1614 146 202 3 chr5 25028110 25028427 -127508832 + ORR1B1 LTR MaLR 1 380 -14 1 775 262 260 55 0 chr5 25028438 25028511 -127508748 + Lx7 LINE L1 7045 7121 -575 1 775 197 185 261 0 chr5 25028597 25028662 -127508597 + L3 LINE CR1 67 148 -4341 1 775 288 111 22 0 chr5 25028944 25028989 -127508270 + ID_B1 SINE B4 79 124 -100 1 775 878 56 126 16 chr5 25028952 25029072 -127508187 + B1_Mm SINE Alu 7 141 -6 1 775 225 83 0 0 chr5 25029072 25029108 -127508151 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1 775 919 179 41 56 chr5 25029186 25029381 -127507878 + B3 SINE B2 1 192 -24 1 775 927 124 0 0 chr5 25029387 25029532 -127507727 + (TA)n Simple_repeat Simple_repeat 1 145 0 1 775 234 0 0 0 chr5 25029532 25029558 -127507701 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 775 802 152 14 7 chr5 25029560 25029699 -127507560 - B1_Mur4 SINE Alu -9 141 2 1 775 1199 79 55 0 chr5 25029743 25029908 -127507351 + B2_Mm1t SINE B2 1 174 -19 1 775 189 195 0 0 chr5 25029945 25029986 -127507273 + GA-rich Low_complexity Low_complexity 2 42 0 1 775 1177 69 0 0 chr5 25030432 25030577 -127506682 + B1_Mus2 SINE Alu 2 146 -1 1 775 1045 84 0 7 chr5 25030607 25030751 -127506508 - B1_Mus1 SINE Alu 0 148 6 1 775 1302 111 0 6 chr5 25030751 25030932 -127506327 - B2_Mm2 SINE B2 -14 181 2 1 775 24 0 0 0 chr5 25030942 25030966 -127506293 + AT_rich Low_complexity Low_complexity 1 24 0 1 775 821 184 14 0 chr5 25030972 25031113 -127506146 + B1_Mus2 SINE Alu 5 147 0 1 775 375 264 11 0 chr5 25031670 25031761 -127505498 - MIRc SINE MIR -59 209 118 1 775 301 172 0 54 chr5 25032339 25032431 -127504828 - Lx7 LINE L1 0 7696 7610 1 775 391 211 20 59 chr5 25032473 25032574 -127504685 - ID_B1 SINE B4 -2 222 126 1 775 378 211 74 0 chr5 25033827 25033922 -127503337 - PB1D10 SINE Alu -11 106 5 1 775 385 243 136 0 chr5 25033930 25034033 -127503226 - ID_B1 SINE B4 -2 222 106 1 775 318 235 226 0 chr5 25034033 25034045 -127503214 - B1F SINE Alu 0 149 9 1 775 950 85 0 8 chr5 25034248 25034378 -127502881 - B1_Mus1 SINE Alu -19 129 1 1 775 575 200 291 0 chr5 25034547 25034712 -127502547 + B3 SINE B2 1 213 -3 1 776 248 192 0 119 chr5 25034855 25034914 -127502345 + B1_Mur1 SINE Alu 92 143 -6 1 776 30 59 0 0 chr5 25035705 25035756 -127501503 + GC_rich Low_complexity Low_complexity 1 51 0 1 776 552 88 12 0 chr5 25036685 25036765 -127500494 + B1_Mur4 SINE Alu 70 150 0 1 776 316 322 92 126 chr5 25037062 25037138 -127500121 - B4 SINE B4 -10 282 87 1 776 471 262 87 8 chr5 25037138 25037265 -127499994 - B1_Mur1 SINE Alu -11 138 2 1 776 519 298 25 45 chr5 25037298 25037317 -127499942 - B3A SINE B2 0 198 180 1 776 1280 34 0 0 chr5 25037317 25037463 -127499796 - B1_Mm SINE Alu 0 147 2 1 776 519 298 25 45 chr5 25037463 25037643 -127499616 - B3A SINE B2 -19 179 3 1 776 467 255 27 27 chr5 25038403 25038552 -127498707 - B1F SINE Alu 0 149 1 1 776 394 194 77 129 chr5 25038623 25038834 -127498425 + RMER1B Other Other 363 527 -539 1 776 348 218 38 47 chr5 25038896 25039002 -127498257 + B4A SINE B4 69 173 -119 1 776 732 51 0 10 chr5 25038925 25039024 -127498235 + B1_Mus2 SINE Alu 11 108 -39 1 776 246 164 0 0 chr5 25039024 25039079 -127498180 + G-rich Low_complexity Low_complexity 1 55 0 1 776 200 59 29 0 chr5 25039108 25039142 -127498117 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 776 1559 166 168 51 chr5 25039153 25039471 -127497788 + RMER1B Other Other 646 1009 -57 1 776 1119 76 0 14 chr5 25039471 25039618 -127497641 + B1_Mus1 SINE Alu 2 146 -2 1 776 1559 166 168 51 chr5 25039618 25039673 -127497586 + RMER1B Other Other 1010 1063 -3 1 776 245 275 35 70 chr5 25039722 25039808 -127497451 + B1_Mur4 SINE Alu 27 109 -41 1 776 264 320 0 39 chr5 25039968 25040046 -127497213 + ID4 SINE ID 6 80 -3 1 776 875 120 34 34 chr5 25040380 25040527 -127496732 - B1_Mur4 SINE Alu 0 150 4 1 776 315 277 93 56 chr5 25040530 25040637 -127496622 - B1F SINE Alu -34 115 5 1 776 313 297 0 0 chr5 25040666 25040740 -127496519 - ID4_ SINE ID -8 75 2 1 776 950 173 6 23 chr5 25040863 25041216 -127496043 + CT-rich Low_complexity Low_complexity 1 346 0 1 776 779 179 57 0 chr5 25041216 25041356 -127495903 - B1_Mur1 SINE Alu -1 148 1 1 776 378 254 86 26 chr5 25041356 25041473 -127495786 - MLT1B LTR MaLR -264 126 3 1 776 2339 142 55 5 chr5 25041800 25042219 -127495040 - RMER10A LTR ERVL -2 440 1 1 776 318 325 0 123 chr5 25042231 25042249 -127495010 - B1_Mur3 SINE Alu -27 122 107 1 776 180 0 0 0 chr5 25042249 25042269 -127494990 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 776 323 283 0 85 chr5 25042269 25042380 -127494879 - B1_Mur2 SINE Alu -43 106 9 1 776 466 229 96 43 chr5 25042419 25042606 -127494653 + B3A SINE B2 1 197 -1 1 776 361 231 36 27 chr5 25043136 25043247 -127494012 + PB1D10 SINE Alu 5 116 -1 1 776 277 216 79 26 chr5 25043296 25043372 -127493887 + ID_B1 SINE B4 125 204 -20 1 776 219 314 14 0 chr5 25043422 25043492 -127493767 - ID4 SINE ID -1 82 12 1 776 377 241 0 61 chr5 25043493 25043608 -127493651 + PB1D10 SINE Alu 1 108 -9 1 776 2400 133 158 7 chr5 25043735 25044166 -127493093 - RLTR19A LTR ERVK 0 496 1 1 776 519 256 60 8 chr5 25044188 25044322 -127492937 - RSINE1 SINE B4 -21 144 4 1 776 422 238 104 9 chr5 25044365 25044471 -127492788 + PB1D9 SINE Alu 3 118 -2 1 776 546 205 71 93 chr5 25045808 25045948 -127491311 - B1F1 SINE Alu -3 146 10 1 776 262 271 33 99 chr5 25045978 25046089 -127491170 - B1F SINE Alu -5 115 11 1 776 739 313 92 35 chr5 25046154 25046644 -127490615 + Lx9 LINE L1 6953 7470 -174 1 776 660 26 0 0 chr5 25046651 25046729 -127490530 + (GA)n Simple_repeat Simple_repeat 2 79 0 1 776 969 95 190 0 chr5 25046796 25046954 -127490305 - B2_Mm2 SINE B2 -6 189 2 1 776 625 159 198 0 chr5 25046966 25047092 -127490167 - B3 SINE B2 -10 206 56 1 776 372 104 0 0 chr5 25047202 25047269 -127489990 + (TCTCTG)n Simple_repeat Simple_repeat 6 72 0 1 776 443 292 107 75 chr5 25047277 25047436 -127489823 - RSINE1 SINE B4 0 165 2 1 776 253 246 15 15 chr5 25047515 25047581 -127489678 + Charlie1 DNA MER1_type 6 71 -2710 1 776 697 239 69 0 chr5 25047580 25047768 -127489491 + Charlie1 DNA MER1_type 2364 2564 -217 1 776 560 232 80 0 chr5 25047763 25047901 -127489358 + ID_B1 SINE B4 76 224 0 1 776 414 162 0 0 chr5 25047901 25047975 -127489284 + A-rich Low_complexity Low_complexity 1 74 0 1 776 1145 42 28 0 chr5 25048225 25048368 -127488891 - B1_Mm SINE Alu 0 147 1 1 776 446 284 13 54 chr5 25048380 25048495 -127488764 - B1_Mur1 SINE Alu -6 143 30 1 776 1423 69 5 46 chr5 25048495 25048692 -127488567 + B2_Mm2 SINE B2 1 189 -6 1 776 516 29 0 0 chr5 25048693 25048761 -127488498 + L1Md_F2 LINE L1 6503 6570 -12 1 776 446 284 13 54 chr5 25048761 25048792 -127488467 - B1_Mur1 SINE Alu -120 29 4 1 776 508 303 31 16 chr5 25048825 25049016 -127488243 + B3A SINE B2 3 196 -2 1 776 641 224 155 11 chr5 25049041 25049222 -127488037 - B3 SINE B2 -5 211 5 1 776 242 315 62 111 chr5 25049137 25049258 -127488001 + MT2B LTR ERVL 44 153 -448 1 776 608 267 0 16 chr5 25049258 25049380 -127487879 + B1F2 SINE Alu 1 120 -29 1 776 31 26 0 0 chr5 25049381 25049419 -127487840 + AT_rich Low_complexity Low_complexity 1 38 0 1 776 925 139 7 20 chr5 25049426 25049573 -127487686 - B1_Mur4 SINE Alu 0 150 6 1 776 241 26 53 0 chr5 25049601 25049639 -127487620 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 776 1125 44 0 0 chr5 25049655 25049790 -127487469 - B1_Mus1 SINE Alu -12 136 2 1 776 210 322 103 9 chr5 25050051 25050167 -127487092 - MER5A DNA MER1_type -56 133 7 1 776 445 203 10 37 chr5 25050280 25050383 -127486876 + ID_B1 SINE B4 82 169 -55 1 776 326 269 86 0 chr5 25050304 25050397 -127486862 + B1F2 SINE Alu 9 109 -40 1 776 340 255 236 0 chr5 25050915 25051021 -127486238 + B1F1 SINE Alu 19 149 0 1 776 391 246 122 90 chr5 25051024 25051180 -127486079 + RSINE1 SINE B4 5 165 0 1 776 706 233 7 14 chr5 25051207 25051355 -127485904 + B1_Mur1 SINE Alu 3 149 0 1 776 737 199 0 33 chr5 25051431 25051582 -127485677 + B1_Mur3 SINE Alu 2 147 -2 1 776 1153 58 0 0 chr5 25051657 25051796 -127485463 + B1_Mm SINE Alu 1 139 -8 1 776 354 74 0 0 chr5 25051796 25051850 -127485409 + (CCAA)n Simple_repeat Simple_repeat 2 55 0 1 776 274 323 48 48 chr5 25051870 25052010 -127485249 + PB1D7 SINE Alu 7 146 -3 2 776 389 277 179 21 chr5 25052071 25052112 -127485147 + U1 snRNA snRNA 3 55 -110 2 776 2495 115 52 21 chr5 25052112 25052493 -127484766 + ORR1B1 LTR MaLR 2 394 0 2 776 389 277 179 21 chr5 25052493 25052591 -127484668 + U1 snRNA snRNA 56 163 -2 2 776 516 254 26 68 chr5 25052615 25052805 -127484454 + B3A SINE B2 1 182 -16 2 776 684 114 31 16 chr5 25052822 25053082 -127484177 + (CA)n Simple_repeat Simple_repeat 1 264 0 2 776 375 183 21 155 chr5 25053130 25053227 -127484032 + PB1D7 SINE Alu 26 109 -11 2 776 3150 30 3 3 chr5 25053228 25053592 -127483667 + RLTR10B2 LTR ERVK 1 364 -1 2 776 557 192 87 8 chr5 25053736 25053862 -127483397 - B3 SINE B2 -67 149 14 2 776 421 86 0 0 chr5 25053935 25053993 -127483266 - ORR1B1 LTR MaLR -45 349 292 2 776 798 196 0 20 chr5 25053993 25054139 -127483120 - B1_Mus2 SINE Alu -4 143 1 2 776 420 206 108 36 chr5 25054192 25054303 -127482956 - RSINE1 SINE B4 -4 161 43 2 776 227 100 175 0 chr5 25054304 25054344 -127482915 - MTD LTR MaLR -14 405 359 2 776 215 152 0 0 chr5 25054372 25054405 -127482854 - B1_Mur4 SINE Alu -100 50 18 2 776 485 298 50 22 chr5 25054440 25054622 -127482637 + MLT1B LTR MaLR 92 278 -112 2 776 549 276 14 43 chr5 25054797 25054823 -127482436 - ID_B1 SINE B4 -8 216 194 2 776 2383 84 16 0 chr5 25054823 25055145 -127482114 - ORR1A2 LTR MaLR 0 327 1 2 776 549 293 24 34 chr5 25055145 25055286 -127481973 - ID_B1 SINE B4 -31 193 56 2 776 587 261 157 5 chr5 25055472 25055657 -127481602 - ID_B1 SINE B4 -8 216 4 2 776 214 204 0 18 chr5 25055671 25055703 -127481556 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 776 1201 48 7 0 chr5 25055703 25055848 -127481411 - B1_Mus2 SINE Alu 0 147 2 2 776 214 204 0 18 chr5 25055848 25055870 -127481389 + (TTG)n Simple_repeat Simple_repeat 1 22 0 2 776 693 344 108 0 chr5 25055967 25056217 -127481042 + B4A SINE B4 13 289 -3 2 776 1531 165 114 121 chr5 25056300 25056389 -127480870 - ORR1C2 LTR MaLR 0 384 328 2 776 1855 91 91 3 chr5 25056389 25056676 -127480583 - Lx3C LINE L1 -3 6973 6662 2 776 1380 168 148 0 chr5 25056676 25056973 -127480286 - ORR1C2 LTR MaLR -43 341 1 2 776 1650 142 75 15 chr5 25056973 25057308 -127479951 - ORR1C2-int LTR MaLR 0 1509 1155 2 776 392 204 10 39 chr5 25057514 25057616 -127479643 - ORR1C2-int LTR MaLR -305 1204 1106 2 776 552 263 58 0 chr5 25057619 25057775 -127479484 + B3 SINE B2 48 212 -4 2 776 271 200 187 0 chr5 25057793 25057868 -127479391 - B3A SINE B2 -98 100 12 2 776 300 175 0 0 chr5 25058543 25058600 -127478659 - HAL1-3A_ME LINE L1 -829 2029 1973 2 776 831 157 0 0 chr5 25058609 25058833 -127478426 + (TG)n Simple_repeat Simple_repeat 1 224 0 2 776 243 0 0 0 chr5 25058832 25058859 -127478400 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 776 342 0 0 0 chr5 25058858 25058896 -127478363 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 776 1657 185 43 17 chr5 25058985 25059332 -127477927 + ORR1D1 LTR MaLR 17 372 -2 2 776 474 65 0 0 chr5 25059494 25059556 -127477703 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 2 776 1993 174 36 17 chr5 25059577 25059934 -127477325 + ORR1B2 LTR MaLR 1 364 -3 2 776 735 217 0 0 chr5 25059934 25060063 -127477196 - B1_Mur2 SINE Alu -17 132 4 2 776 1727 169 44 33 chr5 25060096 25060456 -127476803 + RMER20B LTR ERVK 112 475 -152 2 776 3213 174 48 142 chr5 25060489 25061461 -127475798 - RLTR25A LTR ERVK -175 853 5 2 776 3437 168 20 63 chr5 25061465 25062248 -127475011 + ORR1B2-int LTR MaLR 1072 1821 -142 2 776 2451 86 35 42 chr5 25062251 25062654 -127474605 - Lx LINE L1 0 6654 6255 2 776 4703 80 11 0 chr5 25062650 25063262 -127473997 + L1_Mus3 LINE L1 6020 6638 0 2 776 20973 80 74 1 chr5 25063319 25063962 -127473297 - Lx LINE L1 -387 6267 5578 2 776 1262 174 40 125 chr5 25063962 25064410 -127472849 - RMER17C LTR ERVK 0 410 1 2 776 20973 156 47 58 chr5 25064410 25065245 -127472014 - Lx LINE L1 -306 5577 4747 2 776 1120 103 6 11 chr5 25065245 25065263 -127471996 - B2_Mm2 SINE B2 -19 176 159 2 776 243 0 0 0 chr5 25065263 25065290 -127471969 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 2 776 1143 57 13 0 chr5 25065290 25065448 -127471811 - B2_Mm1a SINE B2 -33 160 1 2 776 20973 156 47 58 chr5 25065448 25068045 -127469214 - Lx LINE L1 -1137 4746 2017 2 776 632 67 11 0 chr5 25068045 25068135 -127469124 + (TTTC)n Simple_repeat Simple_repeat 3 93 0 2 776 1163 129 35 0 chr5 25068135 25068306 -127468953 - B2_Mm1t SINE B2 -15 178 2 2 776 20973 156 47 58 chr5 25068306 25068675 -127468584 - Lx LINE L1 -3867 2016 1650 2 776 1711 161 11 86 chr5 25068675 25069057 -127468202 + ORR1B2 LTR MaLR 42 394 0 2 776 1248 197 161 19 chr5 25069071 25069450 -127467809 - RMER4B LTR ERVK -152 433 1 2 776 206 274 0 0 chr5 25069455 25069506 -127467753 + (TCTG)n Simple_repeat Simple_repeat 1 51 0 2 776 1796 172 52 92 chr5 25069522 25069868 -127467391 + RMER5 LTR ERV1 13 354 -180 2 776 1194 48 7 0 chr5 25069868 25070014 -127467245 - B1_Mus2 SINE Alu 0 147 1 2 776 1796 172 52 92 chr5 25070014 25070165 -127467094 + RMER5 LTR ERV1 355 490 -44 2 776 4415 198 68 6 chr5 25070414 25071474 -127465785 + Lx7 LINE L1 295 1419 -4461 2 776 204 40 0 0 chr5 25071474 25071499 -127465760 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 776 2413 172 58 7 chr5 25071499 25071827 -127465432 + Lx7 LINE L1 1420 1767 -4113 2 776 852 158 19 12 chr5 25071830 25071990 -127465269 + Lx7 LINE L1 3520 3680 -2200 2 776 8847 174 35 39 chr5 25071990 25072758 -127464501 + Lx7 LINE L1 3973 4741 -1139 2 776 672 204 14 21 chr5 25072758 25072898 -127464361 + B1_Mus1 SINE Alu 5 143 -5 2 776 240 59 0 0 chr5 25072898 25072932 -127464327 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2 776 8847 174 35 39 chr5 25072932 25073989 -127463270 + Lx7 LINE L1 4742 5790 -90 2 776 13244 91 69 9 chr5 25073993 25076712 -127460547 + L1VL2 LINE L1 94 2983 -632 2 776 578 146 19 30 chr5 25076757 25076884 -127460375 + Lx7 LINE L1 5769 5888 -1808 2 776 2787 218 34 9 chr5 25076879 25077461 -127459798 + Lx7 LINE L1 6149 6745 -951 2 776 1840 206 143 82 chr5 25077461 25077963 -127459296 + MT2A LTR ERVL 1 533 0 2 776 3160 156 80 17 chr5 25077963 25078551 -127458708 + MERVL_2A-int LTR ERVL 1 625 -5136 2 776 796 208 227 15 chr5 25078614 25078797 -127458462 - Lx5 LINE L1 0 7050 6813 2 776 468 0 0 0 chr5 25078797 25078849 -127458410 + (CAGG)n Simple_repeat Simple_repeat 3 54 0 2 776 796 208 227 15 chr5 25078849 25078934 -127458325 - Lx5 LINE L1 -238 6812 6726 2 776 1641 113 104 24 chr5 25078934 25079223 -127458036 - MERVL_2A-int LTR ERVL -5449 312 1 2 776 1313 164 5 5 chr5 25079233 25079453 -127457806 - Lx4B LINE L1 -304 6754 6535 2 776 514 252 0 56 chr5 25079499 25079642 -127457617 - RLTR20D LTR ERVK -21 557 423 2 776 642 263 60 67 chr5 25079632 25079917 -127457342 - RLTR20D LTR ERVK -285 283 1 2 776 647 123 95 77 chr5 25079919 25080087 -127457172 - MYSERV16_I-int LTR ERVK -2 2324 2154 2 776 357 130 0 36 chr5 25080096 25080152 -127457107 - MERVL_2A-int LTR ERVL -4725 1036 983 2 776 1369 129 17 4 chr5 25080194 25080428 -127456831 - MYSERV16_I-int LTR ERVK -202 2124 1888 2 776 216 91 22 43 chr5 25080430 25080476 -127456783 + T-rich Low_complexity Low_complexity 4 48 0 2 776 1263 35 0 0 chr5 25080477 25080621 -127456638 - B1_Mm SINE Alu -1 146 3 2 776 1608 174 61 9 chr5 25080622 25080964 -127456295 - MYSERV16_I-int LTR ERVK -428 1898 1539 2 776 1113 133 10 29 chr5 25080965 25081174 -127456085 - ORR1A4 LTR MaLR -49 280 76 2 776 2551 172 96 25 chr5 25081145 25081706 -127455553 - RLTR33 LTR ERVK -77 601 1 2 776 2418 146 70 20 chr5 25081834 25082109 -127455150 + MERVL_2A-int LTR ERVL 914 1186 -4575 2 776 881 145 34 7 chr5 25082109 25082255 -127455004 + B1_Mur4 SINE Alu 1 150 0 2 776 2418 146 70 20 chr5 25082255 25082420 -127454839 + MERVL_2A-int LTR ERVL 1187 1376 -4385 2 776 286 225 42 0 chr5 25082450 25082521 -127454738 + MERVL_2A-int LTR ERVL 5550 5623 -138 2 776 754 170 197 57 chr5 25082515 25082592 -127454667 + MERVL_2A-int LTR ERVL 5409 5485 -276 2 776 1094 101 0 0 chr5 25082592 25082730 -127454529 + B1_Mur4 SINE Alu 1 138 -12 2 776 492 18 0 0 chr5 25082730 25082787 -127454472 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 2 776 754 170 197 57 chr5 25082787 25082901 -127454358 + MERVL_2A-int LTR ERVL 5486 5627 -134 2 776 323 275 0 32 chr5 25082901 25082995 -127454264 + ORR1A3-int LTR MaLR 567 657 -1306 2 776 5815 85 46 28 chr5 25083488 25084321 -127452938 - Lx3_Mus LINE L1 -553 6456 5608 2 776 3457 25 5 2 chr5 25084321 25084716 -127452543 + MTA_Mm LTR MaLR 1 396 0 2 776 5815 83 43 14 chr5 25084716 25085091 -127452168 - Lx3_Mus LINE L1 -276 5610 5210 2 776 3283 30 110 2 chr5 25085091 25085520 -127451739 - IAPLTR2_Mm LTR ERVK 0 475 1 2 776 6465 56 12 19 chr5 25085522 25086357 -127450902 - IAPEz-int LTR ERVK -2 6479 5651 2 776 11580 71 37 82 chr5 25086350 25088123 -127449136 - IAPEz-int LTR ERVK -4781 1700 9 2 776 3317 22 139 2 chr5 25088124 25088542 -127448717 - IAPLTR2_Mm LTR ERVK 0 475 1 2 776 1283 55 0 18 chr5 25088542 25088708 -127448551 - L1_Mur2 LINE L1 -671 5215 5053 2 776 5612 83 13 10 chr5 25088707 25089533 -127447726 + L1_Mur1 LINE L1 2860 3688 -2198 2 776 1478 86 44 31 chr5 25089520 25089540 -127447719 - L1_Mur2 LINE L1 -858 5019 5002 2 776 2638 56 55 14 chr5 25089540 25089885 -127447374 - RLTR10D LTR ERVK 0 359 1 2 776 1478 86 44 31 chr5 25089885 25090092 -127447167 - L1_Mur2 LINE L1 -876 5001 4789 2 776 674 147 8 0 chr5 25090092 25090221 -127447038 + CT-rich Low_complexity Low_complexity 3 132 0 2 776 534 252 8 0 chr5 25090221 25090344 -127446915 - B1_Mus2 SINE Alu -21 126 3 2 776 931 109 95 0 chr5 25090481 25090618 -127446641 - B1_Mur4 SINE Alu 0 150 1 2 776 321 66 336 19 chr5 25090775 25090882 -127446377 - B2_Mm2 SINE B2 -7 188 48 2 776 1288 86 23 0 chr5 25090949 25091124 -127446135 - B2_Mm1t SINE B2 -14 179 1 2 776 1138 76 7 0 chr5 25091476 25091621 -127445638 - B1_Mus2 SINE Alu 0 147 2 2 776 557 165 0 0 chr5 25091694 25091785 -127445474 - B3 SINE B2 -95 121 31 2 776 24 53 0 0 chr5 25091843 25091881 -127445378 + AT_rich Low_complexity Low_complexity 1 38 0 2 776 294 29 0 0 chr5 25092786 25092821 -127444438 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 776 23 0 0 0 chr5 25092964 25092987 -127444272 + AT_rich Low_complexity Low_complexity 1 23 0 2 776 959 150 194 0 chr5 25092996 25093176 -127444083 + B3 SINE B2 1 215 -1 2 776 216 143 0 45 chr5 25093586 25093630 -127443629 + T-rich Low_complexity Low_complexity 3 44 0 2 776 612 181 118 0 chr5 25093635 25093762 -127443497 - B1_Mur2 SINE Alu -7 142 1 2 776 1265 164 119 3 chr5 25093919 25094212 -127443047 + RMER5 LTR ERV1 13 339 -195 2 776 3718 118 10 16 chr5 25094211 25094560 -127442699 - RMER6A LTR ERVK -138 618 276 2 776 2418 92 3 0 chr5 25094560 25094886 -127442373 - ORR1A2 LTR MaLR 0 327 1 2 776 3718 118 10 16 chr5 25094886 25095158 -127442101 - RMER6A LTR ERVK -481 275 1 2 776 467 220 0 0 chr5 25095161 25095252 -127442007 - RSINE1 SINE B4 -70 95 5 2 776 326 366 9 9 chr5 25095269 25095382 -127441877 - ID_B1 SINE B4 -34 190 78 2 776 302 185 92 0 chr5 25095536 25095601 -127441658 - ID4_ SINE ID -1 82 12 2 776 630 273 88 58 chr5 25095641 25095983 -127441276 - ORR1E LTR MaLR 0 359 8 2 776 1115 204 14 5 chr5 25096406 25096613 -127440646 + B3 SINE B2 3 211 -5 2 776 674 291 15 5 chr5 25096714 25096914 -127440345 - B3 SINE B2 -13 203 2 2 776 616 241 8 0 chr5 25096929 25097062 -127440197 - B1_Mur1 SINE Alu -6 143 10 2 776 1376 210 75 12 chr5 25097261 25097594 -127439665 + ORR1C2 LTR MaLR 1 354 -30 2 776 1756 162 19 84 chr5 25097600 25097970 -127439289 + ORR1B1 LTR MaLR 41 386 -8 2 776 1983 164 11 0 chr5 25097974 25098327 -127438932 + ORR1B1-int LTR MaLR 1 357 -1152 2 776 2239 16 0 0 chr5 25098327 25098580 -127438679 - L1Md_F3 LINE L1 -556 6028 5776 3 776 4640 33 6 2 chr5 25098580 25099128 -127438131 + L1Md_F3 LINE L1 6034 6583 -1 3 776 6652 156 35 133 chr5 25099133 25099183 -127438076 + ORR1B1-int LTR MaLR 336 375 -1588 2 776 1375 82 5 16 chr5 25099183 25099370 -127437889 - B2_Mm2 SINE B2 -10 185 1 3 776 6652 156 35 133 chr5 25099370 25101123 -127436136 + ORR1B1-int LTR MaLR 376 1963 0 2 776 1805 134 14 156 chr5 25101123 25101528 -127435731 + ORR1B1 LTR MaLR 1 350 -44 2 776 1645 42 0 0 chr5 25101528 25101721 -127435538 + B2_Mm1a SINE B2 1 193 0 3 776 1805 134 14 156 chr5 25101721 25101758 -127435501 + ORR1B1 LTR MaLR 351 380 -14 2 776 315 313 26 32 chr5 25101798 25101953 -127435306 + B4 SINE B4 80 233 -59 3 776 2903 160 203 11 chr5 25102145 25102810 -127434449 - RMER19B LTR ERVK -7 895 103 3 776 905 25 0 0 chr5 25102828 25102946 -127434313 - B1_Mus2 SINE Alu 0 147 30 3 776 263 250 0 35 chr5 25102946 25103004 -127434255 - RMER19B LTR ERVK -814 88 33 3 776 1330 53 53 0 chr5 25103135 25103304 -127433955 - B2_Mm2 SINE B2 -16 179 2 3 776 352 257 0 0 chr5 25103355 25103429 -127433830 + ID4 SINE ID 2 75 -8 3 776 240 64 64 0 chr5 25103430 25103477 -127433782 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 776 390 289 28 28 chr5 25103483 25103590 -127433669 + RSINE1 SINE B4 59 165 0 3 776 230 135 19 37 chr5 25103617 25103671 -127433588 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 3 776 677 216 157 0 chr5 25103698 25103883 -127433376 + B3 SINE B2 2 215 -1 3 776 239 224 0 0 chr5 25104015 25104064 -127433195 - L1MEc LINE L1 -5660 740 692 3 776 217 152 0 0 chr5 25104316 25104349 -127432910 + B4A SINE B4 9 41 -251 3 776 980 47 0 15 chr5 25104521 25104652 -127432607 + (TCTCCC)n Simple_repeat Simple_repeat 3 131 0 3 776 584 218 0 0 chr5 25104654 25104764 -127432495 - B1_Mur1 SINE Alu -10 139 30 3 776 493 258 172 0 chr5 25105563 25105714 -127431545 - ID_B1 SINE B4 -10 214 38 3 776 952 249 5 19 chr5 25105936 25106149 -127431110 + B3 SINE B2 2 211 -5 3 776 513 261 7 7 chr5 25106644 25106779 -127430480 - ID_B1 SINE B4 0 224 90 3 776 311 265 25 33 chr5 25106904 25107025 -127430234 - RSINE1 SINE B4 -39 126 7 3 776 689 208 19 0 chr5 25107275 25107355 -127429904 + ID SINE ID 2 84 -140 3 776 250 235 148 34 chr5 25107355 25107443 -127429816 + 7SLRNA srpRNA srpRNA 2 99 -215 3 776 555 16 0 0 chr5 25107534 25107598 -127429661 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 776 261 0 0 0 chr5 25107598 25107626 -127429633 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 776 666 201 43 0 chr5 25107630 25107769 -127429490 - B1_Mur2 SINE Alu -1 148 4 3 776 339 194 41 107 chr5 25107672 25107793 -127429466 - MT2B LTR ERVL -344 257 145 3 776 450 274 0 9 chr5 25108510 25108617 -127428642 + B1_Mur2 SINE Alu 1 106 -43 3 776 207 0 0 0 chr5 25108756 25108779 -127428480 + (TC)n Simple_repeat Simple_repeat 1 23 0 3 776 420 20 0 0 chr5 25108782 25108831 -127428428 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 776 280 263 13 0 chr5 25108836 25108916 -127428343 - PB1D10 SINE Alu -8 112 29 3 776 1100 124 0 6 chr5 25109214 25109393 -127427866 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 3 776 656 213 16 0 chr5 25109402 25109524 -127427735 - B1_Mus2 SINE Alu -22 125 2 3 776 345 341 0 0 chr5 25109950 25110041 -127427218 + B1F1 SINE Alu 4 94 -55 3 776 468 223 62 0 chr5 25110051 25110078 -127427181 + ID SINE ID 53 86 -138 3 776 272 303 81 0 chr5 25110078 25110177 -127427082 + PB1D10 SINE Alu 1 107 -10 3 776 188 265 147 39 chr5 25110369 25110471 -127426788 - MIR SINE MIR -119 143 31 3 776 732 218 42 106 chr5 25110977 25111213 -127426046 + ID_B1 SINE B4 2 222 -2 3 776 487 286 122 14 chr5 25111334 25111621 -127425638 + LTR73 LTR ERV1 28 345 -227 3 776 262 292 156 0 chr5 25112121 25112217 -127425042 - ID_B1 SINE B4 -31 193 83 3 776 1933 219 53 53 chr5 25112351 25112468 -127424791 - RMER1B Other Other 0 1066 949 3 776 261 0 0 0 chr5 25112468 25112497 -127424762 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 776 1933 219 53 53 chr5 25112497 25112905 -127424354 - RMER1B Other Other -118 948 543 3 776 1493 182 116 9 chr5 25112886 25113214 -127424045 - RMER1B Other Other -660 406 44 3 776 1091 209 19 14 chr5 25113304 25113518 -127423741 - B3 SINE B2 0 216 2 3 776 777 254 35 6 chr5 25113546 25113720 -127423539 - B3A SINE B2 -18 180 2 3 776 842 179 14 0 chr5 25114019 25114164 -127423095 - B1_Mur4 SINE Alu 0 150 4 3 776 292 223 56 97 chr5 25114164 25114196 -127423063 - MT2B LTR ERVL -449 152 127 3 776 354 108 0 0 chr5 25114205 25114270 -127422989 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 3 776 261 234 58 105 chr5 25114275 25114361 -127422898 + B1_Mur1 SINE Alu 68 149 0 3 776 257 310 11 33 chr5 25114808 25114898 -127422361 + BC1_Mm scRNA scRNA 18 105 -47 3 776 378 246 212 22 chr5 25114903 25115082 -127422177 - B3 SINE B2 -2 214 2 3 776 539 267 21 49 chr5 25115119 25115261 -127421998 + RSINE1 SINE B4 2 139 -26 3 776 540 165 24 65 chr5 25115317 25115440 -127421819 - PB1D9 SINE Alu 0 120 3 3 776 264 111 0 0 chr5 25115448 25115493 -127421766 + (A)n Simple_repeat Simple_repeat 1 45 0 3 776 912 268 5 10 chr5 25115497 25115697 -127421562 + B3 SINE B2 1 199 -17 3 776 416 100 0 12 chr5 25116297 25116378 -127420881 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 776 511 288 8 0 chr5 25116422 25116554 -127420705 + B1F SINE Alu 3 135 -14 3 776 476 189 105 0 chr5 25116568 25116663 -127420596 + B1_Mur2 SINE Alu 35 139 -10 3 776 740 246 7 0 chr5 25116698 25116836 -127420423 + RSINE1 SINE B4 4 142 -23 3 776 1372 80 11 21 chr5 25116994 25117185 -127420074 - B2_Mm2 SINE B2 -2 193 5 3 776 751 244 17 56 chr5 25117234 25117468 -127419791 + RLTR16 LTR ERVK 2 226 -279 3 776 246 271 149 99 chr5 25117565 25117807 -127419452 - MLT1F LTR MaLR -53 495 242 3 776 1132 214 18 0 chr5 25118621 25118841 -127418418 + ID_B1 SINE B4 1 224 0 3 776 185 0 40 0 chr5 25119176 25119201 -127418058 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 776 578 265 57 35 chr5 25119259 25119442 -127417817 - B3 SINE B2 0 216 26 3 776 503 295 12 86 chr5 25119469 25119632 -127417627 - RSINE1 SINE B4 -1 164 14 3 776 354 123 0 0 chr5 25120225 25120282 -127416977 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 776 2086 171 56 111 chr5 25120308 25120871 -127416388 - RMER1B Other Other -130 936 344 3 776 335 173 0 26 chr5 25120911 25120988 -127416271 + C-rich Low_complexity Low_complexity 1 75 0 3 776 425 125 162 0 chr5 25121007 25121087 -127416172 - B1F SINE Alu -52 97 5 3 776 369 0 0 0 chr5 25121578 25121619 -127415640 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 776 813 204 199 0 chr5 25121643 25121819 -127415440 - B3 SINE B2 -4 212 2 3 776 299 226 149 47 chr5 25121934 25122041 -127415218 + PB1 SINE Alu 1 118 -9 3 776 402 253 46 0 chr5 25122051 25122138 -127415121 + ID_B1 SINE B4 130 220 -4 3 776 348 295 14 79 chr5 25122130 25122155 -127415104 + ID_B1 SINE B4 79 209 -15 3 776 645 226 17 0 chr5 25122155 25122270 -127414989 + B1_Mur2 SINE Alu 18 134 -15 3 776 387 0 0 0 chr5 25122274 25122317 -127414942 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 776 339 266 73 95 chr5 25122320 25122457 -127414802 + B1F SINE Alu 16 149 0 3 776 323 239 77 33 chr5 25122518 25122609 -127414650 - RSINE1 SINE B4 -40 125 31 3 776 226 152 43 0 chr5 25123445 25123491 -127413768 - ID_B1 SINE B4 0 224 177 3 776 272 204 93 0 chr5 25123451 25123505 -127413754 - PB1D7 SINE Alu -6 114 56 3 776 353 308 21 85 chr5 25123530 25123718 -127413541 + B4 SINE B4 2 177 -115 3 776 355 268 36 24 chr5 25123742 25123826 -127413433 + B3 SINE B2 5 89 -127 3 776 495 170 104 0 chr5 25123879 25123985 -127413274 - PB1D10 SINE Alu 0 117 1 3 776 379 271 61 66 chr5 25123985 25124210 -127413049 - L1M5 LINE L1 -2926 3220 2963 3 776 357 62 0 0 chr5 25124267 25124315 -127412944 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 776 411 243 0 0 chr5 25124405 25124578 -127412681 + GA-rich Low_complexity Low_complexity 1 173 0 3 776 1394 16 6 13 chr5 25124972 25125286 -127411973 + (TG)n Simple_repeat Simple_repeat 1 311 0 3 776 563 95 75 6 chr5 25125529 25125688 -127411571 + (TG)n Simple_repeat Simple_repeat 1 170 0 3 776 390 313 46 113 chr5 25125691 25125842 -127411417 - RSINE1 SINE B4 0 165 25 3 776 329 265 65 5 chr5 25125860 25125961 -127411298 - B1F SINE Alu -42 107 7 3 776 231 240 105 13 chr5 25126036 25126112 -127411147 + ID2 SINE ID 1 83 0 3 776 669 253 0 64 chr5 25126137 25126293 -127410966 + B1_Mur1 SINE Alu 2 147 -2 3 776 239 241 53 122 chr5 25126358 25126396 -127410863 + RLTR25A LTR ERVK 419 538 -565 3 776 380 174 27 53 chr5 25126396 25126471 -127410788 + B1_Mus2 SINE Alu 44 116 -33 3 776 237 262 131 0 chr5 25126467 25126551 -127410708 + ID_B1 SINE B4 130 224 0 3 776 239 241 53 122 chr5 25126471 25126492 -127410767 + RLTR25A LTR ERVK 539 612 -491 3 776 768 38 9 0 chr5 25126652 25126758 -127410501 + L1Md_T LINE L1 6476 6582 0 3 776 962 42 0 0 chr5 25126768 25126886 -127410373 + B1_Mus1 SINE Alu 2 119 -29 3 776 616 289 22 16 chr5 25126893 25127076 -127410183 + B4A SINE B4 91 274 -18 3 776 206 304 0 18 chr5 25127093 25127150 -127410109 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 776 426 271 8 78 chr5 25127575 25127703 -127409556 - PB1D7 SINE Alu 0 120 2 3 776 313 295 133 0 chr5 25127750 25127855 -127409404 + ID_B1 SINE B4 104 222 -2 3 776 354 304 7 161 chr5 25128419 25128556 -127408703 + PB1D10 SINE Alu 2 117 0 4 776 1149 8 0 0 chr5 25128665 25128795 -127408464 + (CTGGGG)n Simple_repeat Simple_repeat 3 132 0 4 776 317 164 59 71 chr5 25129766 25129851 -127407408 - B1F SINE Alu 0 149 66 4 776 256 293 0 0 chr5 25129873 25129931 -127407328 - B1F SINE Alu -22 127 70 4 776 413 294 0 113 chr5 25129932 25130074 -127407185 - B1F1 SINE Alu -23 126 1 4 776 213 353 114 32 chr5 25129964 25130087 -127407172 - ID_B1 SINE B4 -23 201 69 4 776 531 237 35 14 chr5 25130114 25130255 -127407004 + B1F SINE Alu 1 144 -5 4 776 595 258 31 8 chr5 25130555 25130684 -127406575 + RSINE1 SINE B4 2 133 -32 4 776 724 232 49 33 chr5 25130749 25130932 -127406327 - ID_B1 SINE B4 -37 187 2 4 776 507 17 0 0 chr5 25131663 25131723 -127405536 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 776 205 29 59 0 chr5 25131925 25131959 -127405300 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 776 280 176 0 0 chr5 25131973 25132024 -127405235 - ID_B1 SINE B4 -5 219 169 4 776 272 234 71 47 chr5 25132024 25132058 -127405201 - B1F SINE Alu -5 144 58 4 776 423 220 110 0 chr5 25132068 25132159 -127405100 + B1_Mur1 SINE Alu 9 109 -40 4 776 330 26 0 0 chr5 25132177 25132216 -127405043 + (TC)n Simple_repeat Simple_repeat 2 40 0 4 776 1810 199 120 89 chr5 25132235 25133151 -127404108 - RMER17B LTR ERVK -53 855 4 4 776 666 184 132 0 chr5 25133587 25133723 -127403536 + B3A SINE B2 1 154 -44 4 776 231 188 0 0 chr5 25133757 25133805 -127403454 + GA-rich Low_complexity Low_complexity 3 50 0 4 776 654 232 34 40 chr5 25133816 25133964 -127403295 + B3A SINE B2 2 148 -50 4 776 261 0 0 0 chr5 25133968 25133997 -127403262 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 776 21 0 0 0 chr5 25133997 25134018 -127403241 + AT_rich Low_complexity Low_complexity 1 21 0 4 776 279 0 0 0 chr5 25134018 25134049 -127403210 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 776 1171 44 0 0 chr5 25134051 25134188 -127403071 - B1_Mm SINE Alu -6 141 5 4 776 22 0 0 0 chr5 25134226 25134248 -127403011 + AT_rich Low_complexity Low_complexity 1 22 0 4 776 425 342 59 63 chr5 25135076 25135347 -127401912 + B4 SINE B4 2 271 -21 4 776 1028 220 11 0 chr5 25135462 25135473 -127401786 - B3 SINE B2 -1 215 205 4 776 510 253 59 20 chr5 25135473 25135542 -127401717 - U1 snRNA snRNA -2 163 96 4 776 375 23 0 0 chr5 25135542 25135586 -127401673 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 776 510 253 59 20 chr5 25135586 25135669 -127401590 - U1 snRNA snRNA -70 95 5 4 776 1028 220 11 0 chr5 25135669 25135848 -127401411 - B3 SINE B2 -12 204 24 4 776 775 141 16 8 chr5 25135860 25135989 -127401270 + B1_Mur3 SINE Alu 18 147 -2 4 776 653 230 8 0 chr5 25136585 25136711 -127400548 - B3A SINE B2 -70 128 2 4 776 299 253 76 0 chr5 25136740 25136819 -127400440 - PB1D9 SINE Alu -1 119 35 4 776 362 269 93 0 chr5 25136834 25136942 -127400317 + PB1D7 SINE Alu 1 118 -2 4 776 222 217 15 77 chr5 25137055 25137120 -127400139 + PB1 SINE Alu 42 102 -25 4 776 233 167 188 0 chr5 25137118 25137166 -127400093 + B3A SINE B2 51 107 -91 4 776 1708 135 67 186 chr5 25137200 25137636 -127399623 - ORR1C2 LTR MaLR 0 384 1 4 776 861 251 48 19 chr5 25137767 25138035 -127399224 - B4 SINE B4 -12 280 5 4 776 216 383 60 9 chr5 25138064 25138180 -127399079 - B4 SINE B4 -87 205 84 4 776 2244 70 12 68 chr5 25138412 25138750 -127398509 + ORR1A2 LTR MaLR 1 319 -8 4 776 275 247 39 0 chr5 25138820 25138897 -127398362 + ORR1E LTR MaLR 8 87 -272 4 776 360 232 69 29 chr5 25140009 25140111 -127397148 + PB1D10 SINE Alu 1 106 -11 4 776 1976 127 135 3 chr5 25140108 25140449 -127396810 - ORR1B1 LTR MaLR -8 386 1 4 776 944 162 172 40 chr5 25140450 25140765 -127396494 + MTD LTR MaLR 5 414 -7 4 776 266 264 0 0 chr5 25140766 25140819 -127396440 + ID_B1 SINE B4 169 221 -3 4 776 303 28 0 0 chr5 25140828 25140864 -127396395 + (TGGGGG)n Simple_repeat Simple_repeat 3 38 0 4 776 781 189 21 14 chr5 25140898 25141043 -127396216 + B1_Mur2 SINE Alu 3 148 -1 4 776 970 186 27 11 chr5 25141062 25141247 -127396012 + B3 SINE B2 27 214 -2 4 776 526 90 22 11 chr5 25141271 25141303 -127395956 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 4 776 1269 101 26 21 chr5 25141303 25141495 -127395764 + B2_Mm2 SINE B2 3 195 0 4 776 526 90 22 11 chr5 25141495 25141552 -127395707 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 4 776 741 254 72 40 chr5 25141552 25141774 -127395485 + B4A SINE B4 1 229 -63 4 776 448 317 26 46 chr5 25142081 25142276 -127394983 + RMER4B LTR ERVK 24 214 -371 4 776 23 54 0 0 chr5 25142510 25142547 -127394712 + AT_rich Low_complexity Low_complexity 1 37 0 4 776 5492 48 0 16 chr5 25142562 25143236 -127394023 - L1Md_F2 LINE L1 0 6582 5920 4 776 255 154 19 19 chr5 25143238 25143291 -127393968 - B1_Mur1 SINE Alu 0 149 97 4 776 747 291 181 10 chr5 25143512 25143804 -127393455 - MTE2b LTR MaLR -3 376 35 4 776 261 0 0 0 chr5 25143896 25143925 -127393334 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 776 270 0 0 0 chr5 25143925 25143954 -127393305 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 776 330 282 99 78 chr5 25144012 25144154 -127393105 + L1MEc LINE L1 1451 1595 -4805 4 776 387 0 0 0 chr5 25144160 25144203 -127393056 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 776 767 208 0 0 chr5 25144213 25144343 -127392916 - B1_Mur1 SINE Alu -19 130 1 4 776 351 232 79 9 chr5 25144620 25144721 -127392538 + PB1D10 SINE Alu 5 118 -29 4 776 490 219 142 8 chr5 25144721 25144841 -127392418 + RSINE1 SINE B4 1 136 -29 4 776 28 0 0 0 chr5 25144841 25144869 -127392390 + AT_rich Low_complexity Low_complexity 1 28 0 4 776 504 0 0 0 chr5 25145609 25145665 -127391594 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 4 776 396 0 0 0 chr5 25145815 25145859 -127391400 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 776 409 240 103 28 chr5 25146024 25146131 -127391128 - PB1D10 SINE Alu 0 117 3 4 776 494 284 82 2 chr5 25146131 25146207 -127391052 - ID_B1 SINE B4 -134 90 1 4 776 210 326 115 8 chr5 25146326 25146456 -127390803 - L2a LINE L2 -9 3417 3274 4 776 273 276 110 20 chr5 25146788 25146888 -127390371 - RLTR25A LTR ERVK -473 630 522 4 776 637 138 7 1 chr5 25146821 25146932 -127390327 - B1_Mus1 SINE Alu -3 117 3 4 776 578 223 32 156 chr5 25147135 25147353 -127389906 - B3A SINE B2 -6 192 2 4 776 948 221 39 14 chr5 25147592 25147799 -127389460 - B3 SINE B2 -1 215 4 4 776 252 257 0 54 chr5 25148015 25148089 -127389170 + ID4 SINE ID 4 73 -10 4 776 821 163 0 0 chr5 25148821 25148944 -127388315 - B1_Mur4 SINE Alu -27 123 1 4 776 422 219 45 116 chr5 25148944 25148976 -127388283 - MT2B LTR ERVL -325 276 133 4 776 298 224 58 35 chr5 25149314 25149426 -127387833 + PB1D9 SINE Alu 9 129 -21 4 776 400 168 10 10 chr5 25149467 25149569 -127387690 + GA-rich Low_complexity Low_complexity 1 102 0 4 776 229 197 229 57 chr5 25149590 25149660 -127387599 + B1_Mus1 SINE Alu 14 95 -53 4 776 342 304 91 45 chr5 25149695 25149949 -127387310 + B4 SINE B4 16 274 -18 4 776 351 0 0 0 chr5 25149949 25149988 -127387271 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 776 217 258 61 20 chr5 25150027 25150062 -127387197 - ID_B1 SINE B4 -107 117 15 4 776 231 191 62 16 chr5 25150062 25150126 -127387133 - ID4_ SINE ID -2 81 15 4 776 189 0 0 0 chr5 25150267 25150288 -127386971 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 776 446 118 19 19 chr5 25150376 25150480 -127386779 + (TG)n Simple_repeat Simple_repeat 1 104 0 4 776 600 155 28 11 chr5 25150513 25150689 -127386570 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 776 181 298 71 80 chr5 25150824 25150870 -127386389 + MIRb SINE MIR 43 84 -184 4 776 1669 161 255 6 chr5 25150870 25151207 -127386052 + MTC LTR MaLR 1 421 0 4 776 181 298 71 80 chr5 25151207 25151273 -127385986 + MIRb SINE MIR 85 154 -114 4 776 623 239 30 0 chr5 25151280 25151414 -127385845 + B1F SINE Alu 6 143 -6 4 776 370 291 46 8 chr5 25152209 25152346 -127384913 - ID_B1 SINE B4 -7 217 77 4 776 1949 153 28 50 chr5 25152679 25152780 -127384479 - RLTR14 LTR ERV1 -33 349 261 4 776 192 40 0 0 chr5 25152780 25152805 -127384454 + (TTA)n Simple_repeat Simple_repeat 3 27 0 4 776 994 162 29 11 chr5 25152808 25152983 -127384276 - B2_Mm2 SINE B2 -16 179 2 4 776 1949 153 28 50 chr5 25152983 25153234 -127384025 - RLTR14 LTR ERV1 -122 260 1 4 776 423 184 107 0 chr5 25153361 25153454 -127383805 - B1F SINE Alu -41 108 7 4 776 428 256 23 76 chr5 25153486 25153617 -127383642 + RSINE1 SINE B4 2 125 -40 4 776 720 184 246 0 chr5 25153952 25154131 -127383128 + ID_B1 SINE B4 2 224 0 4 776 442 91 45 18 chr5 25154132 25154244 -127383015 + A-rich Low_complexity Low_complexity 5 119 0 4 776 1047 227 0 20 chr5 25154503 25154705 -127382554 + B3A SINE B2 1 198 0 4 776 22 35 0 0 chr5 25154765 25154794 -127382465 + AT_rich Low_complexity Low_complexity 1 29 0 4 776 2656 149 158 4 chr5 25154804 25155304 -127381955 + RMER4B LTR ERVK 1 577 -8 4 776 393 22 0 0 chr5 25155306 25155352 -127381907 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 776 270 0 0 0 chr5 25155352 25155381 -127381878 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 776 279 0 0 0 chr5 25155381 25155411 -127381848 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 776 1141 109 283 0 chr5 25155438 25155718 -127381541 - ORR1B2 LTR MaLR -1 366 8 5 776 358 291 197 0 chr5 25155717 25155834 -127381425 - RSINE1 SINE B4 -25 140 1 5 776 183 291 36 0 chr5 25156048 25156103 -127381156 + L3 LINE CR1 755 811 -3678 5 776 1471 62 5 25 chr5 25156116 25156314 -127380945 - B2_Mm2 SINE B2 0 195 2 5 776 311 319 71 18 chr5 25156446 25156615 -127380644 - L1MD LINE L1 -1946 4194 4017 5 776 388 269 73 9 chr5 25157380 25157489 -127379770 + ID_B1 SINE B4 103 218 -6 5 776 532 294 8 0 chr5 25157831 25157957 -127379302 - RSINE1 SINE B4 -35 130 4 5 776 198 0 0 0 chr5 25158317 25158339 -127378920 + (TTAA)n Simple_repeat Simple_repeat 2 23 0 5 776 198 167 0 0 chr5 25158947 25158983 -127378276 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 776 1848 164 147 3 chr5 25159140 25159507 -127377752 - RLTR23 LTR ERV1 0 430 11 5 776 396 292 35 0 chr5 25159656 25159769 -127377490 - ID_B1 SINE B4 -6 218 102 5 776 1101 248 74 82 chr5 25160553 25160924 -127376335 - MTEa LTR MaLR -2 357 2 5 776 3171 49 20 8 chr5 25161414 25161805 -127375454 - MTA_Mm LTR MaLR 0 396 1 5 776 1519 53 16 0 chr5 25161814 25162001 -127375258 - B2_Mm2 SINE B2 -5 190 1 5 776 456 275 58 8 chr5 25162002 25162123 -127375136 + ID_B1 SINE B4 95 221 -3 5 776 548 255 0 135 chr5 25162261 25162324 -127374935 + ID_B1 SINE B4 83 137 -87 5 776 765 206 200 0 chr5 25162324 25162499 -127374760 + B3 SINE B2 1 210 -6 5 776 548 255 0 135 chr5 25162499 25162598 -127374661 + ID_B1 SINE B4 138 223 -1 5 776 412 263 92 8 chr5 25162821 25162940 -127374319 + B1F2 SINE Alu 15 143 -6 5 776 3489 144 45 11 chr5 25163049 25163700 -127373559 - L1_Mur3 LINE L1 -1248 4632 3960 5 776 466 244 174 52 chr5 25163689 25163901 -127373358 + Lx6 LINE L1 7215 7452 -8 5 776 882 139 22 0 chr5 25163908 25164045 -127373214 + B1_Mus1 SINE Alu 1 140 -8 5 776 225 0 0 0 chr5 25164046 25164071 -127373188 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 776 279 243 0 0 chr5 25164071 25164141 -127373118 + MER2 DNA MER2_type 154 223 -122 5 776 624 208 17 0 chr5 25164142 25164262 -127372997 + RSINE1 SINE B4 1 122 -43 5 776 429 20 0 0 chr5 25164396 25164446 -127372813 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 776 634 221 15 30 chr5 25164802 25164937 -127372322 - B1_Mur2 SINE Alu -5 144 12 5 776 231 378 49 25 chr5 25164841 25164963 -127372296 - B4 SINE B4 -94 198 74 5 776 433 243 57 28 chr5 25164981 25165087 -127372172 - B1F SINE Alu -16 133 25 5 776 768 155 153 88 chr5 25165234 25165490 -127371769 + RLTR41 LTR ERV1 3 227 -219 5 777 1338 144 92 5 chr5 25166191 25166408 -127370851 + RLTR41 LTR ERV1 211 446 0 5 777 228 143 0 0 chr5 25166813 25166855 -127370404 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 777 324 0 0 0 chr5 25167053 25167089 -127370170 + (T)n Simple_repeat Simple_repeat 1 36 0 5 777 1212 55 0 0 chr5 25167089 25167235 -127370024 - B1_Mm SINE Alu 0 147 2 5 777 5370 30 25 0 chr5 25167559 25168190 -127369069 - L1Md_F2 LINE L1 0 6582 5936 5 777 468 0 0 0 chr5 25168232 25168284 -127368975 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 777 279 331 21 69 chr5 25168380 25168403 -127368856 + MTE-int LTR MaLR 1366 1386 -349 5 777 1399 72 0 53 chr5 25168403 25168609 -127368650 + B2_Mm2 SINE B2 1 195 0 5 777 389 337 41 62 chr5 25168609 25168913 -127368346 + MTE-int LTR MaLR 1235 1544 -191 5 777 2966 56 9 68 chr5 25169254 25169279 -127367980 - MTB LTR MaLR 0 400 376 5 777 315 0 0 0 chr5 25169279 25169314 -127367945 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 777 2966 56 9 68 chr5 25169314 25169713 -127367546 - MTB LTR MaLR -25 375 1 5 777 2380 66 30 0 chr5 25169805 25170107 -127367152 + RLTR10E LTR ERVK 1 311 0 5 777 289 336 76 0 chr5 25170380 25170499 -127366760 + RSINE1 SINE B4 9 136 -29 5 777 266 296 42 100 chr5 25170587 25170827 -127366432 + B4A SINE B4 15 240 -52 5 777 234 0 0 0 chr5 25170856 25170882 -127366377 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 777 320 250 15 0 chr5 25171014 25171082 -127366177 + B4A SINE B4 29 97 -195 5 777 435 187 39 141 chr5 25171083 25171232 -127366027 + B1_Mur1 SINE Alu 2 136 -13 5 777 294 50 0 0 chr5 25171232 25171272 -127365987 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 777 1103 82 0 20 chr5 25171288 25171437 -127365822 + B1_Mus1 SINE Alu 1 146 -2 5 777 268 281 67 0 chr5 25171455 25171544 -127365715 + B4A SINE B4 78 172 -120 5 777 339 85 0 0 chr5 25171569 25171616 -127365643 + (A)n Simple_repeat Simple_repeat 1 47 0 5 777 378 0 0 0 chr5 25171682 25171724 -127365535 + (TC)n Simple_repeat Simple_repeat 1 42 0 5 777 411 73 0 0 chr5 25171724 25171778 -127365481 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 777 912 142 21 16 chr5 25172394 25172582 -127364677 - B3 SINE B2 -11 184 1 5 777 268 216 20 0 chr5 25172601 25172652 -127364607 - B1F SINE Alu -70 79 28 5 777 497 184 71 0 chr5 25172699 25172797 -127364462 - PB1D10 SINE Alu -11 106 2 5 777 889 17 0 17 chr5 25172817 25172936 -127364323 + B1_Mus2 SINE Alu 31 147 0 5 777 257 267 13 13 chr5 25173258 25173334 -127363925 + ORR1E LTR MaLR 2 77 -282 5 777 851 198 283 0 chr5 25173860 25174118 -127363141 - MTD LTR MaLR -88 331 1 5 777 466 164 296 15 chr5 25174118 25174312 -127362947 - MTD LTR MaLR -123 296 46 5 777 721 238 63 5 chr5 25174782 25174972 -127362287 + B3 SINE B2 3 203 -13 5 777 232 173 0 19 chr5 25174997 25175050 -127362209 + B3 SINE B2 165 216 0 5 777 307 250 58 103 chr5 25175175 25175349 -127361910 + B4 SINE B4 1 166 -126 5 777 276 336 24 8 chr5 25175425 25175551 -127361708 + (CA)n Simple_repeat Simple_repeat 1 128 0 5 777 181 222 32 0 chr5 25175576 25175639 -127361620 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 777 445 264 0 0 chr5 25175643 25175749 -127361510 + B1F SINE Alu 37 142 -7 5 777 557 237 95 3 chr5 25175746 25175918 -127361341 + B4 SINE B4 27 211 -81 5 777 387 0 0 0 chr5 25175992 25176035 -127361224 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 777 634 214 20 52 chr5 25176387 25176540 -127360719 - B1_Mur1 SINE Alu 0 149 2 5 777 290 298 17 97 chr5 25176540 25176557 -127360702 - B4 SINE B4 -62 225 70 5 777 604 219 6 81 chr5 25176789 25176963 -127360296 - B3A SINE B2 0 198 38 5 777 226 232 14 14 chr5 25177715 25177785 -127359474 - ID4 SINE ID -13 70 1 5 777 401 186 196 0 chr5 25178433 25178530 -127358729 - ID_B1 SINE B4 -1 223 108 5 777 289 213 250 0 chr5 25178530 25178541 -127358718 - B1F SINE Alu 0 149 15 5 777 261 0 0 0 chr5 25179186 25179215 -127358044 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 5 777 775 189 21 7 chr5 25179260 25179404 -127357855 - B1_Mur2 SINE Alu -3 146 1 5 777 929 171 103 10 chr5 25179409 25179604 -127357655 - B3 SINE B2 0 216 4 5 777 26 30 0 0 chr5 25179612 25179645 -127357614 + AT_rich Low_complexity Low_complexity 1 33 0 5 777 225 200 267 0 chr5 25179755 25179815 -127357444 - RSINE1 SINE B4 -87 78 3 5 777 257 306 10 39 chr5 25180228 25180330 -127356929 - ID_B1 SINE B4 -110 114 16 5 777 2154 143 31 11 chr5 25180335 25180695 -127356564 - ORR1B2 LTR MaLR 0 367 1 5 777 303 28 0 0 chr5 25180737 25180773 -127356486 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 777 406 242 65 26 chr5 25181016 25181169 -127356090 - B3A SINE B2 -1 197 39 5 777 6214 60 7 1 chr5 25181236 25182008 -127355251 + L1_Mus1 LINE L1 5792 6567 0 5 777 330 268 34 51 chr5 25182160 25182278 -127354981 - PB1D10 SINE Alu -1 116 1 5 777 563 280 178 25 chr5 25182506 25182594 -127354665 - MTEa-int LTR MaLR -619 961 853 5 777 326 0 0 69 chr5 25182594 25182652 -127354607 + (CTGGGG)n Simple_repeat Simple_repeat 3 56 0 5 777 563 280 178 25 chr5 25182652 25182878 -127354381 - MTEa-int LTR MaLR -728 852 601 5 777 886 282 141 9 chr5 25182912 25183352 -127353907 - MTEa-int LTR MaLR -1078 502 5 5 777 680 261 136 162 chr5 25183353 25183742 -127353517 - MTEa LTR MaLR 0 379 1 5 777 569 231 177 11 chr5 25183816 25183991 -127353268 - ID_B1 SINE B4 -12 212 9 5 777 293 209 0 29 chr5 25183929 25183998 -127353261 - BC1_Mm scRNA scRNA -84 68 2 5 777 306 262 127 47 chr5 25184019 25184231 -127353028 + Charlie2b DNA MER1_type 2293 2521 -261 5 777 412 268 212 0 chr5 25184253 25184432 -127352827 - L1MB2 LINE L1 -1 6182 5966 5 777 22 35 0 0 chr5 25184463 25184492 -127352767 + AT_rich Low_complexity Low_complexity 1 29 0 5 777 476 256 93 47 chr5 25184501 25184780 -127352479 + B4A SINE B4 1 292 0 5 777 2166 126 12 6 chr5 25184939 25185266 -127351993 + ORR1A4 LTR MaLR 1 329 0 5 777 328 215 28 41 chr5 25185357 25185463 -127351796 - B1F SINE Alu -17 100 1 5 777 1788 139 60 58 chr5 25185540 25185905 -127351354 - ORR1C1 LTR MaLR -8 370 5 5 777 24 85 0 0 chr5 25186055 25186114 -127351145 + AT_rich Low_complexity Low_complexity 1 59 0 5 777 545 207 121 0 chr5 25186131 25186247 -127351012 - B3 SINE B2 -86 130 1 5 777 876 220 35 30 chr5 25186247 25186474 -127350785 - B4A SINE B4 -61 231 3 5 777 23 33 0 0 chr5 25186939 25186969 -127350290 + AT_rich Low_complexity Low_complexity 1 30 0 5 777 386 211 103 0 chr5 25187733 25187842 -127349417 + ID_B1 SINE B4 82 198 -26 5 777 265 266 128 0 chr5 25187744 25187853 -127349406 + B1_Mur4 SINE Alu 10 132 -18 5 777 230 209 45 0 chr5 25187895 25187962 -127349297 + L1MB8 LINE L1 5971 6040 -138 5 777 524 245 71 30 chr5 25187969 25188137 -127349122 + B3A SINE B2 14 188 -10 5 777 243 221 0 191 chr5 25188213 25188297 -127348962 - ID4_ SINE ID -4 79 12 6 777 28 48 0 0 chr5 25188537 25188579 -127348680 + AT_rich Low_complexity Low_complexity 1 42 0 6 777 951 150 0 13 chr5 25188579 25188728 -127348531 - B1_Mus1 SINE Alu -1 147 1 6 777 2972 169 121 7 chr5 25188755 25189513 -127347746 - Lx9 LINE L1 -3 7641 6759 6 777 379 197 0 0 chr5 25189513 25189589 -127347670 + PB1D9 SINE Alu 9 84 -36 6 777 956 184 86 5 chr5 25190153 25190350 -127346909 - B3 SINE B2 -3 213 1 6 777 1054 42 0 21 chr5 25190407 25190552 -127346707 - B1_Mus2 SINE Alu 0 147 6 6 777 237 263 0 0 chr5 25190450 25190564 -127346695 - ORR1B1-int LTR MaLR -755 754 641 6 777 29 28 0 0 chr5 25190768 25190804 -127346455 + AT_rich Low_complexity Low_complexity 1 36 0 6 777 995 135 199 17 chr5 25190806 25190987 -127346272 - B3 SINE B2 -1 215 2 6 777 282 179 17 0 chr5 25191412 25191470 -127345789 - B1_Mur2 SINE Alu 0 147 91 6 777 391 236 200 0 chr5 25191966 25192076 -127345183 + B1F SINE Alu 18 149 0 6 777 769 215 46 6 chr5 25192079 25192252 -127345007 + B3A SINE B2 2 181 -17 6 777 595 198 16 0 chr5 25192380 25192501 -127344758 - B1_Mus1 SINE Alu 0 148 26 6 777 540 0 0 0 chr5 25192580 25192640 -127344619 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 777 1189 106 88 37 chr5 25193074 25193289 -127343970 + URR1A DNA MER1_type 1 226 0 6 777 241 289 133 10 chr5 25193329 25193427 -127343832 - PB1D10 SINE Alu -5 112 3 6 777 252 0 0 0 chr5 25193891 25193919 -127343340 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 777 628 193 8 42 chr5 25194000 25194119 -127343140 + PB1D9 SINE Alu 5 119 -1 6 777 428 273 262 14 chr5 25194388 25194589 -127342670 - B4A SINE B4 -20 272 22 6 777 337 267 33 0 chr5 25195494 25195584 -127341675 + RSINE1 SINE B4 56 148 -17 6 777 890 202 104 59 chr5 25195650 25195939 -127341320 + Lx9 LINE L1 6897 7198 -446 6 777 21 0 0 0 chr5 25195940 25195961 -127341298 + AT_rich Low_complexity Low_complexity 1 21 0 6 777 1182 56 0 0 chr5 25196202 25196344 -127340915 + B1_Mus1 SINE Alu 2 143 -5 6 777 879 221 295 31 chr5 25196713 25197035 -127340224 + MTB_Mm LTR MaLR 1 407 0 6 777 502 237 0 0 chr5 25197449 25197542 -127339717 - B1_Mur2 SINE Alu -7 142 50 6 777 515 157 39 0 chr5 25199811 25199913 -127337346 + B3 SINE B2 1 106 -110 6 777 1144 95 0 0 chr5 25199913 25200061 -127337198 + B1_Mus1 SINE Alu 1 148 0 6 777 204 125 0 0 chr5 25200063 25200095 -127337164 + (GAA)n Simple_repeat Simple_repeat 2 33 0 6 777 240 35 0 0 chr5 25200122 25200151 -127337108 + (GAA)n Simple_repeat Simple_repeat 2 30 0 6 777 401 294 37 0 chr5 25200156 25200265 -127336994 + B3 SINE B2 100 212 -4 6 777 675 184 88 0 chr5 25200294 25200430 -127336829 + B1_Mur3 SINE Alu 1 148 -1 6 777 21 0 0 0 chr5 25200503 25200524 -127336735 + AT_rich Low_complexity Low_complexity 1 21 0 6 777 237 294 0 0 chr5 25200891 25200983 -127336276 + A-rich Low_complexity Low_complexity 1 92 0 6 777 316 339 17 23 chr5 25201864 25202039 -127335220 - L1M3 LINE L1 -559 5621 5448 6 777 446 300 74 47 chr5 25202040 25202473 -127334786 + L1MB8 LINE L1 2388 2826 -3314 6 777 466 257 18 9 chr5 25202484 25202598 -127334661 - PB1D10 SINE Alu -2 115 1 6 777 291 204 184 9 chr5 25202598 25202712 -127334547 + L1MB8 LINE L1 5056 5189 -957 6 777 539 312 58 28 chr5 25202832 25203195 -127334064 + L1MB8 LINE L1 5338 5711 -473 6 777 908 230 26 0 chr5 25203266 25203457 -127333802 + B3 SINE B2 15 210 -6 6 777 228 217 133 0 chr5 25203526 25203586 -127333673 + L1MB8 LINE L1 5921 5988 -190 6 777 258 203 51 0 chr5 25203612 25203671 -127333588 + L1MB8 LINE L1 6067 6128 -50 6 777 520 233 150 6 chr5 25204308 25204468 -127332791 - B3A SINE B2 -15 183 1 6 777 356 232 49 69 chr5 25204613 25204715 -127332544 + MTE-int LTR MaLR 1184 1283 -297 6 777 1061 308 42 55 chr5 25204716 25205210 -127332049 - RMER1C Other Other -454 888 401 6 777 459 244 24 16 chr5 25205215 25205340 -127331919 + B4 SINE B4 161 286 -6 6 777 4284 102 91 21 chr5 25205372 25206077 -127331182 - RMER6A LTR ERVK -2 754 1 6 777 1263 213 95 72 chr5 25206190 25206401 -127330858 + MTC LTR MaLR 1 203 -218 6 777 1490 69 27 0 chr5 25206401 25206589 -127330670 + B2_Mm2 SINE B2 2 194 -1 6 777 1263 211 73 58 chr5 25206589 25206775 -127330484 + MTC LTR MaLR 204 398 -23 6 777 293 287 109 18 chr5 25206779 25206889 -127330370 + PB1 SINE Alu 1 120 -7 6 777 476 299 24 43 chr5 25207705 25207869 -127329390 - RSINE1 SINE B4 0 165 5 6 777 595 201 305 0 chr5 25207880 25208034 -127329225 - ID_B1 SINE B4 -6 218 18 6 777 305 227 53 0 chr5 25207968 25208043 -127329216 - ID4_ SINE ID -1 82 4 6 777 285 29 0 0 chr5 25208172 25208206 -127329053 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 6 777 738 248 92 31 chr5 25208255 25208484 -127328775 - MTEa LTR MaLR -133 246 4 6 777 249 228 17 17 chr5 25208546 25208604 -127328655 - B1F SINE Alu -19 130 73 6 777 391 218 146 1 chr5 25208903 25209014 -127328245 + PB1D7 SINE Alu 8 127 -22 6 777 851 193 0 26 chr5 25209092 25209246 -127328013 + B1_Mur4 SINE Alu 1 150 0 6 777 479 276 86 6 chr5 25209269 25209444 -127327815 + B3 SINE B2 18 206 -10 6 777 1096 53 35 8 chr5 25209673 25210076 -127327183 + (TG)n Simple_repeat Simple_repeat 1 414 0 6 777 698 191 0 21 chr5 25210188 25210332 -127326927 - URR1A DNA MER1_type -10 216 76 6 777 510 262 53 7 chr5 25210450 25210600 -127326659 + ID_B1 SINE B4 1 157 -67 6 777 340 311 127 24 chr5 25210600 25210765 -127326494 + B3A SINE B2 1 182 -16 6 777 256 250 16 0 chr5 25210809 25210873 -127326386 + ID_B1 SINE B4 150 214 -10 6 777 834 176 28 0 chr5 25210973 25211115 -127326144 - B1_Mur1 SINE Alu 0 149 4 6 777 976 124 14 0 chr5 25211831 25211976 -127325283 - B1_Mur4 SINE Alu 0 150 4 6 777 397 259 9 44 chr5 25212012 25212125 -127325134 + PB1D7 SINE Alu 3 111 -9 6 777 239 281 12 46 chr5 25212161 25212248 -127325011 + AluF_3 SINE Alu 152 212 -99 6 777 3137 61 5 12 chr5 25212462 25212951 -127324308 - L1_Mus2 LINE L1 0 6566 6169 6 777 231 344 119 8 chr5 25212952 25213078 -127324181 - ID_B1 SINE B4 -84 140 1 6 777 378 0 0 0 chr5 25213524 25213566 -127323693 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 777 816 129 28 14 chr5 25213575 25213716 -127323543 - B1_Mus1 SINE Alu 0 148 6 6 777 1026 155 6 0 chr5 25213725 25213886 -127323373 + MTC LTR MaLR 107 268 -153 6 777 189 107 0 0 chr5 25214020 25214048 -127323211 + (T)n Simple_repeat Simple_repeat 1 28 0 6 777 609 220 114 0 chr5 25214048 25214180 -127323079 - B1_Mus2 SINE Alu 0 147 1 6 777 2095 117 41 9 chr5 25214242 25214586 -127322673 - RLTR15 LTR ERVK -4 355 1 6 777 3137 208 46 71 chr5 25214587 25214896 -127322363 - MYSERV-int LTR ERVK -1 6549 6262 6 777 1234 61 0 0 chr5 25214896 25215043 -127322216 - B1_Mus2 SINE Alu 0 147 1 6 777 3137 208 46 71 chr5 25215043 25215644 -127321615 - MYSERV-int LTR ERVK -289 6261 5662 6 777 1764 153 24 33 chr5 25215676 25216008 -127321251 + ORR1A4 LTR MaLR 1 329 0 6 777 708 204 117 43 chr5 25216454 25216736 -127320523 - MYSERV6-int LTR ERVK -887 8072 7770 6 777 243 256 67 79 chr5 25216748 25216837 -127320422 - RMER4B LTR ERVK -49 536 449 6 777 2733 230 21 60 chr5 25216837 25217615 -127319644 - MYSERV16_I-int LTR ERVK -1376 950 204 6 777 522 99 0 0 chr5 25217617 25217708 -127319551 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 6 777 834 228 53 5 chr5 25217717 25217926 -127319333 - MYSERV-int LTR ERVK -2056 4494 4293 6 777 257 235 0 96 chr5 25217997 25218091 -127319168 - MYSERV-int LTR ERVK -1626 1216 1132 6 777 218 116 72 0 chr5 25218104 25218173 -127319086 + (TTAAA)n Simple_repeat Simple_repeat 5 78 0 6 777 395 194 121 69 chr5 25218197 25218313 -127318946 - B1_Mur3 SINE Alu -6 143 22 6 777 259 119 0 0 chr5 25218401 25218443 -127318816 - MYSERV6-int LTR ERVK -2464 6495 6454 6 777 180 0 0 0 chr5 25218447 25218467 -127318792 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 777 1289 181 62 1 chr5 25218838 25219140 -127318119 - ORR1C1 LTR MaLR -9 375 54 6 777 265 58 0 188 chr5 25219133 25219197 -127318062 - ORR1C1 LTR MaLR -257 110 59 6 777 264 70 0 0 chr5 25219186 25219229 -127318030 - ORR1C1 LTR MaLR -245 133 91 6 777 662 146 39 28 chr5 25219218 25219378 -127317881 - ORR1C1 LTR MaLR -250 144 1 6 777 384 299 28 0 chr5 25219809 25219916 -127317343 - B1F SINE Alu -7 142 33 6 777 29 60 0 0 chr5 25220037 25220087 -127317172 + AT_rich Low_complexity Low_complexity 1 50 0 6 777 329 257 220 0 chr5 25220571 25220680 -127316579 + RSINE1 SINE B4 5 137 -28 6 777 1188 203 124 6 chr5 25220710 25221032 -127316227 - ORR1D1 LTR MaLR -11 363 4 6 777 528 174 0 0 chr5 25221032 25221153 -127316106 + CT-rich Low_complexity Low_complexity 2 122 0 6 777 507 17 0 0 chr5 25221153 25221213 -127316046 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 777 481 212 137 34 chr5 25221269 25221386 -127315873 + RSINE1 SINE B4 8 136 -29 6 777 225 0 0 0 chr5 25221387 25221412 -127315847 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 6 777 346 227 48 120 chr5 25221827 25221952 -127315307 + PB1D10 SINE Alu 2 117 0 6 777 425 211 0 32 chr5 25222228 25222321 -127314938 + PB1D9 SINE Alu 30 119 -1 6 777 1537 265 54 52 chr5 25222553 25223001 -127314258 + L1MC3 LINE L1 6779 7233 -552 6 777 727 276 48 92 chr5 25223001 25223372 -127313887 - ORR1E LTR MaLR 0 359 5 6 777 1537 255 35 34 chr5 25223372 25223585 -127313674 + L1MC3 LINE L1 7234 7543 -339 6 777 300 260 82 7 chr5 25223927 25224074 -127313185 + L1MC3 LINE L1 7594 7751 -34 6 777 30 0 0 0 chr5 25224079 25224109 -127313150 + AT_rich Low_complexity Low_complexity 1 30 0 6 777 879 198 155 0 chr5 25224111 25224298 -127312961 - B3 SINE B2 0 216 1 6 777 425 296 68 0 chr5 25224617 25224749 -127312510 + ID_B1 SINE B4 84 224 0 6 777 536 144 30 40 chr5 25224755 25224856 -127312403 + B3A SINE B2 12 111 -87 6 777 3382 136 183 77 chr5 25225521 25226326 -127310933 - RMER19B LTR ERVK -12 890 1 6 777 3875 124 110 163 chr5 25226326 25227404 -127309855 - MurERV4_19-int LTR ERVK 0 5780 4760 6 777 378 0 0 0 chr5 25227621 25227663 -127309596 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 777 611 222 59 29 chr5 25228095 25228299 -127308960 + ORR1D2 LTR MaLR 53 262 -108 7 777 1571 310 31 7 chr5 25228307 25228752 -127308507 - Lx5 LINE L1 -18 7032 6577 7 777 428 185 0 12 chr5 25228763 25228845 -127308414 + ORR1D2 LTR MaLR 247 327 -43 7 777 843 158 132 39 chr5 25228842 25229046 -127308213 + ORR1D2-int LTR MaLR 54 276 -1094 7 777 437 282 0 31 chr5 25229389 25229517 -127307742 + RSINE1 SINE B4 5 128 -37 7 777 414 224 154 29 chr5 25229499 25229674 -127307585 - B4A SINE B4 -93 199 3 7 777 632 171 372 0 chr5 25230267 25230431 -127306828 + URR1B DNA MER1_type 1 225 0 7 777 3240 56 5 0 chr5 25230840 25231234 -127306025 + MTA_Mm LTR MaLR 1 396 0 7 777 3135 49 7 2 chr5 25231234 25231664 -127305595 + MTA_Mm-int LTR MaLR 1 432 -666 7 777 1559 103 33 0 chr5 25232701 25232943 -127304316 - ORR1A2 LTR MaLR -77 250 1 7 777 234 0 0 0 chr5 25234228 25234254 -127303005 + (A)n Simple_repeat Simple_repeat 1 26 0 7 777 664 315 63 59 chr5 25234874 25235144 -127302115 + B4 SINE B4 14 284 -8 7 777 282 56 0 0 chr5 25235870 25235906 -127301353 + (TCC)n Simple_repeat Simple_repeat 3 38 0 7 777 6328 94 35 1 chr5 25235911 25236787 -127300472 - L1_Mus4 LINE L1 -1 6635 5730 7 777 8142 130 4 1 chr5 25236787 25238014 -127299245 + L1_Mus4 LINE L1 4480 5710 -173 7 777 296 208 146 19 chr5 25238126 25238229 -127299030 + PB1D10 SINE Alu 2 117 0 7 777 195 114 0 0 chr5 25238626 25238661 -127298598 + (A)n Simple_repeat Simple_repeat 1 35 0 7 777 275 263 26 0 chr5 25238675 25238751 -127298508 + ID4 SINE ID 3 80 -3 7 777 457 225 54 0 chr5 25238960 25239071 -127298188 + B3A SINE B2 8 124 -74 7 777 210 143 0 0 chr5 25240079 25240114 -127297145 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 7 777 220 360 0 0 chr5 25240545 25240720 -127296539 + (CAGAC)n Simple_repeat Simple_repeat 4 178 0 7 777 460 311 58 44 chr5 25240934 25241139 -127296120 + ID_B1 SINE B4 4 211 -13 7 777 1164 55 0 20 chr5 25241350 25241498 -127295761 - B1_Mus1 SINE Alu -2 146 2 7 777 1089 165 65 19 chr5 25241502 25241718 -127295541 + URR1A DNA MER1_type 1 226 0 7 777 278 254 0 53 chr5 25242167 25242242 -127295017 - RSINE1 SINE B4 -35 130 60 7 777 469 234 13 0 chr5 25242311 25242429 -127294830 - B1F1 SINE Alu -7 142 17 7 777 711 210 96 6 chr5 25243262 25243439 -127293820 + B3 SINE B2 4 196 -20 7 777 263 28 0 27 chr5 25243453 25243490 -127293769 + (CAAT)n Simple_repeat Simple_repeat 4 39 0 7 777 715 262 39 10 chr5 25243572 25243780 -127293479 - ID_B1 SINE B4 -10 214 1 7 777 468 0 0 0 chr5 25244044 25244096 -127293163 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 777 480 48 0 0 chr5 25244096 25244158 -127293101 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 777 1225 26 0 13 chr5 25244960 25245118 -127292141 + B2_Mm2 SINE B2 3 158 -37 7 777 426 200 42 10 chr5 25245114 25245210 -127292049 - B3A SINE B2 -95 103 5 7 777 502 259 0 0 chr5 25245217 25245325 -127291934 - PB1D7 SINE Alu -7 113 6 7 777 312 281 29 116 chr5 25245550 25245604 -127291655 + ID_B1 SINE B4 55 203 -21 7 777 636 168 0 0 chr5 25245604 25245711 -127291548 + B1_Mus1 SINE Alu 20 126 -22 7 777 540 0 0 0 chr5 25245711 25245771 -127291488 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 777 258 32 0 0 chr5 25245771 25245801 -127291458 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 777 306 0 0 0 chr5 25245815 25245849 -127291410 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 777 415 336 8 0 chr5 25245849 25245974 -127291285 + ID_B1 SINE B4 92 217 -7 7 777 425 264 85 8 chr5 25246725 25246855 -127290404 + RSINE1 SINE B4 24 163 -2 7 777 529 196 62 9 chr5 25246871 25246984 -127290275 + B1F SINE Alu 2 120 -29 7 777 270 0 0 0 chr5 25247000 25247030 -127290229 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 7 777 548 213 97 26 chr5 25247058 25247212 -127290047 + ID_B1 SINE B4 19 183 -41 7 777 345 235 27 117 chr5 25247115 25247226 -127290033 + PB1D10 SINE Alu 6 106 -11 7 777 222 118 0 0 chr5 25247226 25247260 -127289999 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 7 777 1053 179 20 5 chr5 25247780 25247976 -127289283 + ID_B1 SINE B4 1 199 -25 7 777 729 79 0 0 chr5 25247977 25248078 -127289181 + (GGAA)n Simple_repeat Simple_repeat 4 104 0 7 777 621 0 0 0 chr5 25248193 25248262 -127288997 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 777 534 250 90 0 chr5 25248382 25248526 -127288733 - RSINE1 SINE B4 -7 158 2 7 777 1170 112 22 11 chr5 25248574 25248755 -127288504 + B2_Mm2 SINE B2 2 184 -11 7 777 257 194 167 0 chr5 25249346 25249418 -127287841 + BC1_Mm scRNA scRNA 6 89 -63 7 777 671 231 118 20 chr5 25249589 25249792 -127287467 + ID_B1 SINE B4 2 224 0 7 777 265 141 62 0 chr5 25249801 25249865 -127287394 + GA-rich Low_complexity Low_complexity 6 73 0 7 777 189 0 0 0 chr5 25249978 25249999 -127287260 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 7 777 1159 38 6 54 chr5 25250020 25250187 -127287072 + L1Md_F2 LINE L1 6424 6582 0 7 777 2013 110 46 58 chr5 25251096 25251423 -127285836 - ORR1A3 LTR MaLR -1 325 3 7 777 690 196 264 25 chr5 25251604 25251839 -127285420 - B4A SINE B4 -1 291 1 7 777 512 263 0 0 chr5 25251844 25251958 -127285301 - PB1 SINE Alu 0 127 14 7 777 1207 54 0 0 chr5 25252174 25252321 -127284938 - B1_Mus1 SINE Alu 0 148 2 7 777 21 36 0 0 chr5 25253168 25253196 -127284063 + AT_rich Low_complexity Low_complexity 1 28 0 7 777 254 29 0 28 chr5 25253208 25253244 -127284015 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7 777 879 180 0 0 chr5 25253244 25253383 -127283876 - B1_Mur4 SINE Alu -10 140 2 7 777 490 271 51 8 chr5 25253401 25253589 -127283670 - B4A SINE B4 -25 199 1 7 777 450 0 0 0 chr5 25253721 25253771 -127283488 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 777 360 0 0 0 chr5 25253771 25253810 -127283449 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 777 297 214 0 0 chr5 25253903 25253959 -127283300 - ID_B1 SINE B4 -92 132 77 7 777 342 0 0 0 chr5 25254111 25254149 -127283110 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 777 271 299 87 67 chr5 25254415 25254519 -127282740 - PB1D7 SINE Alu -5 115 10 7 777 515 248 145 13 chr5 25255234 25255393 -127281866 + ID_B1 SINE B4 36 215 -9 7 777 226 278 32 43 chr5 25255598 25255692 -127281567 + RMER15 LTR ERVL 439 531 -44 7 777 800 189 0 7 chr5 25256274 25256418 -127280841 - B1_Mm SINE Alu 0 147 5 7 777 255 274 27 0 chr5 25256520 25256593 -127280666 - B1F SINE Alu -69 80 6 7 777 268 315 86 8 chr5 25256539 25256667 -127280592 - ID_B1 SINE B4 -83 141 4 7 777 458 275 0 48 chr5 25256686 25256812 -127280447 + RSINE1 SINE B4 2 121 -44 7 777 1776 163 168 27 chr5 25256889 25257293 -127279966 + RMER6B LTR ERVK 1 461 0 7 777 274 310 8 23 chr5 25258026 25258158 -127279101 + (CATA)n Simple_repeat Simple_repeat 4 133 0 7 777 594 247 110 0 chr5 25258259 25258405 -127278854 - B4A SINE B4 -130 162 1 7 777 619 217 51 0 chr5 25258599 25258737 -127278522 + B1F SINE Alu 5 149 0 7 777 763 214 68 72 chr5 25259858 25260065 -127277194 + ID_B1 SINE B4 2 207 -17 7 777 446 306 115 29 chr5 25261505 25261550 -127275709 + MLT1C LTR MaLR 145 187 -280 7 777 1010 269 14 47 chr5 25261550 25261847 -127275412 + B4 SINE B4 2 288 -4 7 777 446 306 115 29 chr5 25261847 25261866 -127275393 + MLT1C LTR MaLR 188 204 -263 7 777 264 30 0 0 chr5 25261866 25261899 -127275360 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 777 446 306 115 29 chr5 25261899 25262112 -127275147 + MLT1C LTR MaLR 205 446 -21 7 777 1114 169 55 32 chr5 25262144 25262288 -127274971 + URR1B DNA MER1_type 1 156 -69 7 777 1871 126 51 0 chr5 25262288 25262582 -127274677 + RLTR27 LTR ERVK 1 309 0 7 777 1114 169 55 32 chr5 25262582 25262657 -127274602 + URR1B DNA MER1_type 157 225 0 7 777 278 326 0 0 chr5 25262976 25263068 -127274191 - PB1D10 SINE Alu -5 112 21 7 777 1102 147 107 5 chr5 25263523 25263728 -127273531 + URR1A DNA MER1_type 1 226 0 7 777 578 286 196 0 chr5 25263772 25264083 -127273176 - MTEa LTR MaLR -6 353 2 7 777 1435 89 5 0 chr5 25264417 25264607 -127272652 + B2_Mm1t SINE B2 2 192 -1 7 777 647 234 108 0 chr5 25265195 25265353 -127271906 + B3A SINE B2 1 175 -23 7 777 611 139 119 32 chr5 25265416 25265542 -127271717 + B1_Mus1 SINE Alu 1 137 -11 7 777 183 42 0 0 chr5 25265542 25265566 -127271693 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 777 405 0 0 0 chr5 25266534 25266579 -127270680 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 777 368 337 0 0 chr5 25268089 25268187 -127269072 - B1F1 SINE Alu -51 98 1 7 777 310 253 57 118 chr5 25268892 25269103 -127268156 - L1MC4 LINE L1 -432 7610 7413 7 777 207 0 0 0 chr5 25269137 25269160 -127268099 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 7 777 952 233 207 58 chr5 25269187 25269732 -127267527 - RMER20B LTR ERVK -25 602 1 7 777 683 148 0 47 chr5 25269732 25269845 -127267414 - B1_Mus1 SINE Alu -31 117 11 7 777 706 300 95 71 chr5 25270137 25270390 -127266869 - Lx8 LINE L1 -200 7273 7011 7 777 1203 78 60 22 chr5 25270390 25270574 -127266685 - B2_Mm2 SINE B2 -4 191 1 7 777 706 300 95 71 chr5 25270574 25270743 -127266516 - Lx8 LINE L1 -463 7010 6841 7 777 648 286 71 9 chr5 25270771 25270983 -127266276 - Lx8 LINE L1 -1063 6410 6186 7 777 21 0 0 0 chr5 25270983 25271004 -127266255 + AT_rich Low_complexity Low_complexity 1 21 0 7 777 961 197 59 0 chr5 25271011 25271214 -127266045 - B3 SINE B2 -1 215 1 7 777 584 238 13 33 chr5 25271217 25271369 -127265890 - B1_Mur1 SINE Alu 0 149 1 7 777 290 304 15 29 chr5 25271465 25271943 -127265316 + CT-rich Low_complexity Low_complexity 1 471 0 8 777 1208 269 107 4 chr5 25272025 25272552 -127264707 - L1MB1 LINE L1 -1674 5970 5423 8 777 868 200 30 20 chr5 25272564 25272763 -127264496 - B3 SINE B2 -13 203 3 8 777 2217 235 123 70 chr5 25272928 25273325 -127263934 - L1_Mur3 LINE L1 -1495 4385 3911 8 777 2404 79 28 0 chr5 25273325 25273643 -127263616 + ORR1A2 LTR MaLR 1 327 0 8 777 2217 235 123 70 chr5 25273643 25274077 -127263182 - L1_Mur3 LINE L1 -1970 3910 3473 8 777 623 130 194 8 chr5 25274077 25274201 -127263058 - B1_Mm SINE Alu 0 147 1 8 777 2217 235 123 70 chr5 25274201 25274590 -127262669 - L1_Mur3 LINE L1 -2408 3472 3099 8 777 247 201 22 39 chr5 25274679 25274860 -127262399 + (CACAG)n Simple_repeat Simple_repeat 1 178 0 8 777 374 232 169 39 chr5 25274896 25275026 -127262233 - RSINE1 SINE B4 -17 148 2 8 777 529 327 38 9 chr5 25275026 25275341 -127261918 - L1M2 LINE L1 -2996 3147 2824 8 777 402 250 98 29 chr5 25275425 25275598 -127261661 + RLTR23 LTR ERV1 246 430 0 8 777 379 269 75 7 chr5 25275610 25275756 -127261503 - L1_Mur3 LINE L1 -3312 2568 2413 8 777 554 198 0 0 chr5 25275946 25276052 -127261207 + B1_Mus2 SINE Alu 42 147 0 8 777 629 216 55 67 chr5 25276059 25276223 -127261036 + B3A SINE B2 36 197 -1 8 777 445 262 61 50 chr5 25276230 25276411 -127260848 + B3 SINE B2 23 205 -11 8 777 191 125 25 0 chr5 25276416 25276456 -127260803 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 8 777 1557 281 75 66 chr5 25276526 25277408 -127259851 - L1_Mur3 LINE L1 -3527 2353 1464 8 777 378 0 0 0 chr5 25277438 25277480 -127259779 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 777 530 254 121 14 chr5 25277483 25277623 -127259636 - B3A SINE B2 -38 160 6 8 777 853 96 16 0 chr5 25277836 25277961 -127259298 - B3 SINE B2 -89 127 1 8 777 590 210 170 18 chr5 25278047 25278207 -127259052 - B3 SINE B2 -8 208 24 8 777 278 310 7 128 chr5 25278207 25278355 -127258904 - RMER10B LTR ERVL 0 398 269 8 777 266 281 40 32 chr5 25278609 25278734 -127258525 - L1_Rod LINE L1 -6513 659 534 8 777 676 311 43 18 chr5 25279144 25279422 -127257837 + B4A SINE B4 4 288 -4 8 777 384 22 0 0 chr5 25279465 25279510 -127257749 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 777 360 43 0 0 chr5 25279764 25279810 -127257449 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 777 443 288 132 0 chr5 25279936 25280155 -127257104 - L1MC LINE L1 -2373 5509 5262 8 777 592 208 19 39 chr5 25280416 25280571 -127256688 + B3 SINE B2 65 216 0 8 777 291 294 69 31 chr5 25280641 25280771 -127256488 - MER68 LTR ERVL -423 140 6 8 777 213 246 0 0 chr5 25280788 25280853 -127256406 + (TA)n Simple_repeat Simple_repeat 2 66 0 8 777 21 36 0 0 chr5 25280958 25280986 -127256273 + AT_rich Low_complexity Low_complexity 1 28 0 8 777 805 230 63 24 chr5 25280997 25281202 -127256057 + ID_B1 SINE B4 6 218 -6 8 777 1178 42 0 0 chr5 25281532 25281675 -127255584 - B1_Mus2 SINE Alu 0 147 5 8 777 227 257 0 91 chr5 25281989 25282066 -127255193 - B4A SINE B4 -174 118 49 8 777 485 224 73 22 chr5 25282355 25282492 -127254767 - B1_Mur2 SINE Alu -1 148 5 8 777 293 245 21 21 chr5 25282552 25282648 -127254611 + (TA)n Simple_repeat Simple_repeat 1 96 0 8 777 830 235 9 112 chr5 25282755 25283076 -127254183 + RMER17A-int LTR ERVK 1133 1420 -308 8 777 977 217 32 20 chr5 25283292 25283541 -127253718 + RMER13A LTR ERVK 1 252 -608 8 777 495 255 9 9 chr5 25283604 25283715 -127253544 - ID_B1 SINE B4 -20 204 94 8 777 26284 140 19 3 chr5 25283871 25289652 -127247607 - Lx LINE L1 -215 6439 561 8 777 324 323 77 0 chr5 25289669 25289799 -127247460 - ID_B1 SINE B4 -3 221 82 8 777 465 269 56 51 chr5 25289992 25290188 -127247071 + B3A SINE B2 2 198 0 8 777 282 194 0 0 chr5 25291096 25291158 -127246101 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 777 342 325 88 0 chr5 25291363 25291477 -127245782 + RSINE1 SINE B4 3 126 -39 8 777 1948 130 60 6 chr5 25291545 25291633 -127245626 - RLTR20C LTR ERVK 0 534 446 8 777 429 20 0 0 chr5 25291633 25291683 -127245576 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 777 1948 119 41 4 chr5 25291683 25292071 -127245188 - RLTR20C LTR ERVK -89 445 1 8 777 1108 230 156 41 chr5 25292071 25292505 -127244754 - RMER15 LTR ERVL -88 487 4 8 777 222 37 0 0 chr5 25292555 25292582 -127244677 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 8 777 848 182 0 0 chr5 25292652 25292789 -127244470 + B1_Mur2 SINE Alu 1 137 -12 8 777 180 77 0 0 chr5 25292789 25292815 -127244444 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 8 777 691 204 20 27 chr5 25293059 25293205 -127244054 - B1_Mur1 SINE Alu 0 149 5 8 777 366 23 0 0 chr5 25293752 25293795 -127243464 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 8 777 471 217 156 42 chr5 25294062 25294254 -127243005 - RLTR42-int LTR ERVK -4134 1388 1175 8 777 936 265 77 38 chr5 25294460 25294825 -127242434 + MTE2b LTR MaLR 1 379 0 8 777 225 226 15 75 chr5 25295536 25295603 -127241656 + ID4_ SINE ID 11 73 -10 8 777 446 271 164 29 chr5 25295742 25295913 -127241346 + B3 SINE B2 13 206 -10 8 777 213 273 118 54 chr5 25295937 25296030 -127241229 - RSINE1 SINE B4 0 165 67 8 777 426 39 0 0 chr5 25296084 25296136 -127241123 + (CCA)n Simple_repeat Simple_repeat 1 52 0 8 777 1002 203 33 19 chr5 25296214 25296425 -127240834 + B3 SINE B2 3 216 0 8 777 306 73 0 0 chr5 25296518 25296559 -127240700 + (ATTG)n Simple_repeat Simple_repeat 4 44 0 8 778 797 213 7 0 chr5 25296966 25297107 -127240152 + B1_Mur2 SINE Alu 1 142 -7 8 778 704 199 50 0 chr5 25297747 25297888 -127239371 - B1_Mur1 SINE Alu 0 149 2 8 778 222 91 0 0 chr5 25298166 25298199 -127239060 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 8 778 441 293 60 0 chr5 25298213 25298346 -127238913 - B1F SINE Alu -6 143 3 8 778 235 131 34 45 chr5 25299865 25299953 -127237306 + (TATAA)n Simple_repeat Simple_repeat 1 87 0 8 778 737 231 133 11 chr5 25300038 25300226 -127237033 + B3 SINE B2 6 216 0 8 778 1207 113 5 25 chr5 25300456 25300655 -127236604 - ORR1B2 LTR MaLR -8 359 165 8 778 1523 194 0 3 chr5 25300654 25300964 -127236295 - ORR1B2-int LTR MaLR -896 613 305 8 778 2760 168 61 64 chr5 25300967 25301724 -127235535 + RMER1B Other Other 118 1066 0 8 778 398 244 70 70 chr5 25301727 25301855 -127235404 - ID_B1 SINE B4 -1 223 96 8 778 261 293 91 70 chr5 25301855 25301870 -127235389 - B1_Mus1 SINE Alu -2 146 1 8 778 489 183 212 25 chr5 25302123 25302241 -127235018 - B1_Mur2 SINE Alu -1 148 9 8 778 21 36 0 0 chr5 25303257 25303285 -127233974 + AT_rich Low_complexity Low_complexity 1 28 0 8 778 229 310 88 25 chr5 25303800 25303959 -127233300 + MIRb SINE MIR 27 195 -73 8 778 474 18 0 0 chr5 25304088 25304143 -127233116 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 778 183 80 0 0 chr5 25304712 25304737 -127232522 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 8 778 377 331 74 58 chr5 25305260 25305571 -127231688 - MLT1B LTR MaLR -7 383 68 8 778 650 129 15 75 chr5 25306016 25306044 -127231215 - B3 SINE B2 0 216 195 8 778 3147 136 44 15 chr5 25306044 25306589 -127230670 - RLTR31_Mm LTR ERVK 0 561 1 8 778 650 129 15 75 chr5 25306589 25306694 -127230565 - B3 SINE B2 -22 194 91 8 778 802 238 5 72 chr5 25306734 25306942 -127230317 - B3A SINE B2 -4 194 1 8 778 501 17 0 0 chr5 25307259 25307317 -127229942 + (GGGA)n Simple_repeat Simple_repeat 2 59 0 8 778 477 213 117 8 chr5 25307874 25308002 -127229257 - B1_Mur1 SINE Alu -6 143 2 8 778 285 241 17 0 chr5 25308527 25308585 -127228674 - B1F SINE Alu -90 59 1 8 778 428 208 115 0 chr5 25309272 25309368 -127227891 - PB1D10 SINE Alu -7 110 4 8 778 471 35 0 0 chr5 25309490 25309547 -127227712 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 8 778 310 289 107 86 chr5 25309547 25309929 -127227330 - L1M5 LINE L1 -1430 4716 4327 8 778 713 264 12 32 chr5 25309941 25310145 -127227114 + B3A SINE B2 19 216 0 8 778 429 129 0 0 chr5 25310214 25310284 -127226975 + (TCCC)n Simple_repeat Simple_repeat 2 71 0 8 778 764 276 59 7 chr5 25310326 25310596 -127226663 - B4A SINE B4 -8 284 1 8 778 714 234 26 13 chr5 25310746 25310902 -127226357 - RSINE1 SINE B4 -4 161 4 8 778 1015 45 8 0 chr5 25311622 25311756 -127225503 + B1_Mus2 SINE Alu 13 147 0 8 778 309 226 57 38 chr5 25311885 25311991 -127225268 + PB1D10 SINE Alu 1 108 -9 8 778 231 227 106 0 chr5 25312364 25312430 -127224829 - ID4 SINE ID -9 74 2 8 778 201 286 0 16 chr5 25312496 25312560 -127224699 + C-rich Low_complexity Low_complexity 1 63 0 8 778 866 204 51 5 chr5 25312897 25313094 -127224165 - B3 SINE B2 -9 207 2 8 778 671 239 31 0 chr5 25313305 25313464 -127223795 - RSINE1 SINE B4 -1 164 1 8 778 1193 56 0 0 chr5 25316098 25316242 -127221017 - B1_Mus2 SINE Alu -2 145 2 8 778 24 53 0 0 chr5 25316252 25316290 -127220969 + AT_rich Low_complexity Low_complexity 1 38 0 8 778 809 166 0 3 chr5 25316546 25316831 -127220428 + (CA)n Simple_repeat Simple_repeat 1 284 0 8 778 198 91 0 0 chr5 25316832 25316865 -127220394 + (GA)n Simple_repeat Simple_repeat 2 34 0 8 778 1019 279 63 35 chr5 25316878 25316987 -127220272 - L1MA4 LINE L1 -365 5935 5832 8 778 1388 73 10 20 chr5 25316987 25317183 -127220076 - B2_Mm2 SINE B2 -1 194 1 8 778 1019 279 63 35 chr5 25317183 25317500 -127219759 - L1MA4 LINE L1 -469 5831 5497 8 778 1104 92 0 0 chr5 25319118 25319413 -127217846 + (GA)n Simple_repeat Simple_repeat 1 295 0 8 778 609 256 74 40 chr5 25319747 25319922 -127217337 - B3A SINE B2 -16 182 2 8 778 487 277 131 12 chr5 25320133 25320301 -127216958 - B4A SINE B4 -102 190 3 9 778 574 215 24 1 chr5 25320633 25320761 -127216498 - B1F SINE Alu -8 142 6 9 778 224 301 14 14 chr5 25320816 25320890 -127216369 - B4 SINE B4 -218 74 1 9 778 218 326 13 80 chr5 25321224 25321280 -127215979 - ID_B1 SINE B4 -2 222 85 9 778 243 276 20 46 chr5 25321280 25321372 -127215887 - PB1 SINE Alu -51 98 4 9 778 1268 12 53 1 chr5 25321540 25324383 -127212876 + (CTGTG)n Simple_repeat Simple_repeat 1 2988 0 9 778 401 304 34 39 chr5 25324454 25324507 -127212752 - B4 SINE B4 -34 258 208 9 778 574 13 27 0 chr5 25324507 25324582 -127212677 + (GA)n Simple_repeat Simple_repeat 1 77 0 9 778 401 304 34 39 chr5 25324582 25324706 -127212553 - B4 SINE B4 -85 207 82 9 778 525 202 41 25 chr5 25324751 25324786 -127212473 - B1_Mus2 SINE Alu 0 311 3 9 778 334 274 45 75 chr5 25324786 25324920 -127212339 - MT2B LTR ERVL -305 296 167 9 778 405 0 0 0 chr5 25324933 25324978 -127212281 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 9 778 7995 72 6 11 chr5 25324979 25326220 -127211039 - L1_Mus4 LINE L1 0 6636 5455 9 778 3169 157 7 7 chr5 25326215 25326768 -127210491 + L1_Mur2 LINE L1 4864 5416 -461 9 778 1020 84 35 7 chr5 25326800 25326943 -127210316 - B1_Mus1 SINE Alu 0 148 2 9 778 1375 213 31 105 chr5 25327054 25327500 -127209759 - MTC LTR MaLR -8 413 1 9 778 2952 43 3 0 chr5 25328622 25328967 -127208292 + ORR1A1 LTR MaLR 1 346 0 9 778 307 263 24 88 chr5 25329004 25329129 -127208130 + PB1D7 SINE Alu 3 119 -1 9 778 869 116 86 14 chr5 25329510 25329650 -127207609 - B1_Mur4 SINE Alu 0 150 1 9 778 259 347 51 28 chr5 25330098 25330276 -127206983 - MER20 DNA MER1_type -37 182 1 9 778 656 237 116 0 chr5 25330351 25330524 -127206735 + ID_B1 SINE B4 23 215 -9 9 778 252 59 0 0 chr5 25330537 25330571 -127206688 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 9 778 1047 147 0 0 chr5 25331184 25331361 -127205898 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 9 778 1254 95 0 0 chr5 25331363 25331542 -127205717 + (TC)n Simple_repeat Simple_repeat 2 180 0 9 778 272 49 0 47 chr5 25331542 25331585 -127205674 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 9 778 475 211 106 0 chr5 25331585 25331689 -127205570 - PB1D9 SINE Alu 0 120 6 9 778 2123 109 116 0 chr5 25331860 25332189 -127205070 + ORR1B2 LTR MaLR 1 367 0 9 778 378 290 158 7 chr5 25332627 25332766 -127204493 - RSINE1 SINE B4 -2 163 4 9 778 526 298 59 6 chr5 25332826 25332995 -127204264 - B3A SINE B2 -20 178 1 9 778 644 254 8 0 chr5 25333039 25333173 -127204086 + ID_B1 SINE B4 80 214 -10 9 778 465 66 0 0 chr5 25334265 25334326 -127202933 + (CACG)n Simple_repeat Simple_repeat 4 64 0 9 778 195 42 0 0 chr5 25335317 25335341 -127201918 + (TCTCC)n Simple_repeat Simple_repeat 1 24 0 9 778 216 0 0 0 chr5 25336880 25336904 -127200355 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 778 767 93 8 0 chr5 25336904 25337021 -127200238 + (TC)n Simple_repeat Simple_repeat 1 119 0 9 778 508 211 35 99 chr5 25337981 25338123 -127199136 + B3 SINE B2 84 216 0 9 778 210 258 0 70 chr5 25338543 25338614 -127198645 - B4A SINE B4 -140 152 87 9 778 1754 197 33 28 chr5 25340379 25340739 -127196520 - MTD LTR MaLR -8 411 50 9 778 327 315 68 24 chr5 25342152 25342357 -127194902 - L1MA9 LINE L1 -7 6305 6092 9 778 250 215 101 58 chr5 25343282 25343351 -127193908 - ID4_ SINE ID -8 75 4 9 778 507 254 42 14 chr5 25343837 25343981 -127193278 + MER3 DNA MER1_type 62 209 0 9 778 816 169 22 0 chr5 25344059 25344195 -127193064 + B1_Mus2 SINE Alu 9 147 0 9 778 563 218 54 47 chr5 25344249 25344398 -127192861 + B3 SINE B2 67 216 0 9 778 307 224 14 43 chr5 25345160 25345230 -127192029 - ID4 SINE ID -15 68 1 9 778 352 324 58 7 chr5 25345236 25345276 -127191983 - ID_B1 SINE B4 -5 219 100 9 778 354 267 0 11 chr5 25345276 25345367 -127191892 - PB1D10 SINE Alu -22 95 6 9 778 553 280 53 32 chr5 25347252 25347496 -127189763 - ORR1E LTR MaLR -118 256 2 9 778 1640 144 234 20 chr5 25347699 25348053 -127189206 - RLTR23 LTR ERV1 0 430 1 9 778 342 0 0 0 chr5 25348501 25348539 -127188720 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 778 1342 164 194 53 chr5 25348627 25348685 -127188574 - MTD LTR MaLR -8 411 355 9 778 2037 136 0 7 chr5 25348685 25348995 -127188264 + RLTR10E LTR ERVK 1 308 -3 9 778 1342 164 194 53 chr5 25348995 25349296 -127187963 - MTD LTR MaLR -65 354 1 9 778 815 131 7 0 chr5 25349488 25349625 -127187634 + (TG)n Simple_repeat Simple_repeat 2 139 0 9 778 244 287 56 0 chr5 25349664 25349772 -127187487 - L1MD LINE L1 -974 5172 5059 9 778 261 315 37 52 chr5 25351573 25351707 -127185552 + B4A SINE B4 2 133 -159 9 778 251 254 84 0 chr5 25351864 25351935 -127185324 + B4 SINE B4 214 290 -2 9 778 1988 207 121 2 chr5 25353489 25353929 -127183330 - RMER5 LTR ERV1 -16 518 27 9 778 750 70 198 9 chr5 25355145 25355261 -127181998 + B1_Mus1 SINE Alu 8 145 -3 9 778 227 143 15 45 chr5 25355269 25355335 -127181924 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 9 778 203 244 0 0 chr5 25355951 25355996 -127181263 + C-rich Low_complexity Low_complexity 5 49 0 9 778 435 19 0 0 chr5 25356594 25356646 -127180613 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 778 21 0 0 0 chr5 25357030 25357051 -127180208 + AT_rich Low_complexity Low_complexity 1 21 0 9 778 183 250 30 15 chr5 25357097 25357231 -127180028 + (TG)n Simple_repeat Simple_repeat 1 136 0 9 778 479 245 56 31 chr5 25357232 25357392 -127179867 - RSINE1 SINE B4 0 165 2 9 778 24 67 0 0 chr5 25357439 25357484 -127179775 + AT_rich Low_complexity Low_complexity 1 45 0 9 778 387 0 0 0 chr5 25357531 25357574 -127179685 + (TA)n Simple_repeat Simple_repeat 1 43 0 9 778 222 62 0 0 chr5 25357575 25357607 -127179652 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 778 479 263 26 9 chr5 25357724 25357839 -127179420 + RSINE1 SINE B4 11 127 -38 9 778 492 18 0 0 chr5 25357938 25357995 -127179264 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 778 251 240 0 0 chr5 25358027 25358077 -127179182 - Tigger5 DNA MER2_type -162 2244 2195 9 778 405 302 168 11 chr5 25358076 25358267 -127178992 - Tigger5 DNA MER2_type -2100 306 86 9 778 226 154 0 49 chr5 25358595 25358636 -127178623 + B1F1 SINE Alu 88 126 -23 9 778 412 176 114 29 chr5 25358657 25358762 -127178497 + RSINE1 SINE B4 5 118 -47 9 778 305 93 19 0 chr5 25359314 25359368 -127177891 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 778 683 290 100 8 chr5 25359387 25359637 -127177622 - B4A SINE B4 -18 274 2 9 778 1208 212 169 8 chr5 25360232 25360593 -127176666 - MTD LTR MaLR 0 419 1 9 778 317 244 11 23 chr5 25360765 25360853 -127176406 + L1MA8 LINE L1 6195 6281 -10 9 778 1027 38 0 0 chr5 25361047 25361179 -127176080 - L1Md_T LINE L1 -2 6580 6449 9 778 535 17 0 0 chr5 25361179 25361239 -127176020 + L1Md_F3 LINE L1 6329 6388 -196 9 778 546 274 131 6 chr5 25362029 25362205 -127175054 + B3A SINE B2 1 198 0 9 778 27 81 0 0 chr5 25362332 25362394 -127174865 + AT_rich Low_complexity Low_complexity 1 62 0 9 778 1025 214 28 28 chr5 25362887 25363103 -127174156 - B3 SINE B2 0 216 1 9 778 541 274 42 60 chr5 25363929 25364096 -127173163 - RSINE1 SINE B4 0 165 2 9 778 204 125 0 0 chr5 25364096 25364128 -127173131 + (TCC)n Simple_repeat Simple_repeat 3 34 0 9 778 207 182 0 0 chr5 25364162 25364195 -127173064 + polypurine Low_complexity Low_complexity 3 35 0 9 778 206 232 0 0 chr5 25364905 25364961 -127172298 + A-rich Low_complexity Low_complexity 1 56 0 9 778 2450 82 52 23 chr5 25365361 25365710 -127171549 + RLTR10D LTR ERVK 1 359 0 9 778 1228 58 23 6 chr5 25365840 25366014 -127171245 - L1_Mus3 LINE L1 -6 6632 6456 9 778 335 254 241 35 chr5 25366237 25366461 -127170798 + B4A SINE B4 2 271 -21 9 778 205 179 15 15 chr5 25366533 25366552 -127170707 + (CA)n Simple_repeat Simple_repeat 1 19 0 9 778 2068 158 87 10 chr5 25366552 25366941 -127170318 + MTC LTR MaLR 1 419 -2 9 778 205 179 15 15 chr5 25366941 25366989 -127170270 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 778 702 191 73 28 chr5 25367531 25367709 -127169550 - MTEa LTR MaLR 0 379 194 9 778 1337 183 70 77 chr5 25367717 25368090 -127169169 + RLTR20C LTR ERVK 1 457 -94 9 778 267 54 0 0 chr5 25368090 25368127 -127169132 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 778 605 255 75 19 chr5 25368127 25368222 -127169037 + RLTR20C LTR ERVK 458 550 -1 9 778 4109 184 84 41 chr5 25368918 25369945 -127167314 + MYSERV16_I-int LTR ERVK 1 1393 -1449 9 778 3180 137 82 11 chr5 25369951 25371101 -127166158 + MYSERV16_I-int LTR ERVK 1068 2298 -28 9 778 1085 88 0 0 chr5 25371116 25371263 -127165996 - B1_Mus1 SINE Alu 0 148 2 9 778 793 249 42 83 chr5 25371263 25371502 -127165757 + RLTR20C LTR ERVK 84 312 -222 9 778 473 160 298 16 chr5 25371500 25371557 -127165702 + RLTR20C LTR ERVK 423 479 -99 9 778 441 0 0 0 chr5 25371557 25371606 -127165653 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 778 473 160 298 16 chr5 25371606 25371669 -127165590 + RLTR20C LTR ERVK 480 576 -2 9 778 529 298 85 20 chr5 25371684 25371883 -127165376 - MTEa LTR MaLR -167 212 1 9 778 243 256 0 109 chr5 25373446 25373538 -127163721 - MLT1C LTR MaLR -274 193 112 9 778 249 180 33 0 chr5 25373724 25373785 -127163474 + (TTTA)n Simple_repeat Simple_repeat 4 66 0 9 778 778 259 29 0 chr5 25373797 25373971 -127163288 - B3A SINE B2 -17 181 3 9 778 216 0 0 0 chr5 25374050 25374074 -127163185 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 778 907 222 77 17 chr5 25375030 25375335 -127161924 + ORR1D2 LTR MaLR 3 365 -9 9 778 397 287 160 52 chr5 25375387 25375637 -127161622 + MLT2C1 LTR ERVL 116 392 -5 9 778 209 57 29 0 chr5 25376509 25376544 -127160715 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 778 857 205 116 0 chr5 25376568 25376758 -127160501 - B3 SINE B2 -3 213 2 1 778 230 379 0 7 chr5 25376956 25377097 -127160162 + (TG)n Simple_repeat Simple_repeat 1 140 0 1 778 228 343 0 0 chr5 25377306 25377373 -127159886 + (CATG)n Simple_repeat Simple_repeat 4 70 0 1 778 1027 134 6 6 chr5 25377961 25378141 -127159118 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 778 935 289 111 22 chr5 25379399 25379563 -127157696 + RMER5 LTR ERV1 33 205 -329 1 778 357 24 0 0 chr5 25379563 25379605 -127157654 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 778 935 289 111 22 chr5 25379605 25379900 -127157359 + RMER5 LTR ERV1 206 532 -2 1 778 262 218 18 0 chr5 25380367 25380422 -127156837 + RMER15 LTR ERVL 1 56 -519 1 778 429 66 0 0 chr5 25380763 25380824 -127156435 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 778 279 173 0 0 chr5 25381202 25381283 -127155976 + (CCCCAG)n Simple_repeat Simple_repeat 4 84 0 1 778 258 324 35 0 chr5 25381880 25382050 -127155209 + (CATCC)n Simple_repeat Simple_repeat 4 179 0 1 778 429 252 67 112 chr5 25382240 25382463 -127154796 + MTD LTR MaLR 10 222 -197 1 778 248 370 125 75 chr5 25382366 25382687 -127154572 + MT2A LTR ERVL 101 437 -96 1 778 261 180 32 16 chr5 25382945 25383007 -127154252 - B1_Mur3 SINE Alu 0 149 87 1 778 483 277 0 30 chr5 25383654 25383788 -127153471 - ID_B1 SINE B4 -14 210 81 1 778 246 279 78 91 chr5 25383680 25383834 -127153425 - MT2B2 LTR ERVL -321 263 112 1 778 237 316 46 100 chr5 25383766 25383896 -127153363 - MLT1J LTR MaLR -171 341 219 1 778 3268 67 2 0 chr5 25386684 25387104 -127150155 + BGLII LTR ERVK 1 421 0 1 778 230 301 79 67 chr5 25387941 25388030 -127149229 - Charlie23a DNA MER1_type -235 104 15 1 778 851 233 76 5 chr5 25388632 25388843 -127148416 + Lx8 LINE L1 6410 6635 -838 1 778 964 182 40 93 chr5 25388843 25389145 -127148114 - RMER10A LTR ERVL 0 442 157 1 778 854 235 25 20 chr5 25389175 25389379 -127147880 + Lx8 LINE L1 6938 7142 -331 1 778 949 231 118 32 chr5 25389748 25390061 -127147198 + Lx8 LINE L1 7132 7471 -2 1 778 24 0 0 0 chr5 25390061 25390085 -127147174 + AT_rich Low_complexity Low_complexity 1 24 0 1 778 22 0 0 0 chr5 25390133 25390155 -127147104 + AT_rich Low_complexity Low_complexity 1 22 0 1 778 286 245 73 21 chr5 25390449 25390460 -127146799 - B1F1 SINE Alu -1 148 48 1 778 391 235 12 0 chr5 25390460 25390545 -127146714 - ID_B1 SINE B4 -10 214 129 1 778 1301 143 134 17 chr5 25391171 25391463 -127145796 - IAPLTR4 LTR ERVK -19 326 1 1 778 3046 161 56 35 chr5 25391692 25392295 -127144964 + RLTR18 LTR ERVK 1 616 0 1 778 248 286 0 71 chr5 25393876 25393974 -127143285 + CT-rich Low_complexity Low_complexity 2 92 0 1 778 3143 123 34 14 chr5 25397845 25398349 -127138910 - Lx3C LINE L1 -7 6969 6456 1 778 18879 150 9 4 chr5 25399835 25403036 -127134223 - L1_Mur1 LINE L1 -500 5386 2172 1 778 2485 199 14 53 chr5 25403509 25404037 -127133222 + RMER19C LTR ERVK 19 584 -27 1 778 288 0 0 0 chr5 25404037 25404069 -127133190 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 778 2485 191 13 50 chr5 25404069 25404095 -127133164 + RMER19C LTR ERVK 585 610 -1 1 778 319 304 124 43 chr5 25404365 25404688 -127132571 + L1MEc LINE L1 1247 1629 -4786 1 778 531 251 103 35 chr5 25405021 25405339 -127131920 + L1MEc LINE L1 1650 1939 -4461 1 778 301 279 60 147 chr5 25405731 25405983 -127131276 + L1MEc LINE L1 2203 2432 -3983 1 778 1063 216 67 125 chr5 25405990 25406381 -127130878 + MTE2a LTR MaLR 5 372 -7 1 778 2122 210 23 80 chr5 25406502 25407053 -127130206 + RMER19C LTR ERVK 1 611 0 1 778 360 0 0 0 chr5 25407239 25407279 -127129980 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 778 243 0 0 0 chr5 25407360 25407387 -127129872 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1 778 279 0 0 0 chr5 25407409 25407440 -127129819 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1 778 644 198 71 0 chr5 25407440 25407566 -127129693 - B1_Mur2 SINE Alu -14 135 1 1 778 227 279 105 83 chr5 25408774 25408907 -127128352 - MLT1G3 LTR MaLR -399 196 61 1 778 243 0 0 0 chr5 25409158 25409185 -127128074 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1 778 7786 29 0 1 chr5 25410076 25410973 -127126286 - L1Md_T LINE L1 0 6582 5687 1 778 579 229 83 25 chr5 25411148 25411392 -127125867 - MTD LTR MaLR -17 391 1 1 778 558 43 0 0 chr5 25411418 25411487 -127125772 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 778 1029 261 108 68 chr5 25412236 25412709 -127124550 - RMER5 LTR ERV1 -10 524 33 1 778 276 273 0 0 chr5 25414288 25414398 -127122861 + (CA)n Simple_repeat Simple_repeat 1 110 0 1 778 929 244 9 9 chr5 25414570 25414781 -127122478 - B3 SINE B2 -5 211 1 1 778 366 155 91 23 chr5 25414849 25414981 -127122278 + CT-rich Low_complexity Low_complexity 3 143 0 1 778 721 159 11 43 chr5 25415011 25415195 -127122064 + CT-rich Low_complexity Low_complexity 3 180 0 1 778 317 275 0 0 chr5 25415195 25415264 -127121995 + T-rich Low_complexity Low_complexity 1 69 0 1 778 1565 0 29 6 chr5 25415264 25415577 -127121682 + (TTTCC)n Simple_repeat Simple_repeat 1 320 0 1 778 745 72 0 26 chr5 25415581 25415663 -127121596 + (TCTCC)n Simple_repeat Simple_repeat 4 83 0 1 778 1029 51 0 53 chr5 25415663 25415850 -127121409 + (TTTCC)n Simple_repeat Simple_repeat 2 178 0 1 778 745 72 0 26 chr5 25415850 25415882 -127121377 + (TCTCC)n Simple_repeat Simple_repeat 2 33 0 1 778 961 45 30 0 chr5 25416008 25416140 -127121119 - L1Md_F2 LINE L1 -12 6570 6435 1 778 10266 100 8 7 chr5 25416140 25417775 -127119484 + L1_Mus1 LINE L1 4383 6021 -546 1 778 1432 71 11 0 chr5 25417775 25417959 -127119300 + B2_Mm1t SINE B2 2 187 -6 1 778 7681 68 5 13 chr5 25417959 25418516 -127118743 + L1_Mus1 LINE L1 6022 6653 -1 1 778 1307 263 50 21 chr5 25418542 25419142 -127118117 + Lx9 LINE L1 5401 6051 -1593 1 778 1126 67 34 6 chr5 25419195 25419374 -127117885 + L1_Mus3 LINE L1 6439 6622 -16 1 778 3078 51 3 0 chr5 25419374 25419748 -127117511 + L1Md_F2 LINE L1 5211 5585 -298 1 778 8216 48 1 7 chr5 25419749 25420751 -127116508 + L1Md_F2 LINE L1 5587 6582 0 1 778 428 111 0 14 chr5 25420891 25420964 -127116295 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 778 722 321 43 16 chr5 25420967 25421220 -127116039 + Lx9 LINE L1 6359 6618 -1026 1 778 321 145 0 0 chr5 25421265 25421327 -127115932 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 778 2425 85 40 29 chr5 25421450 25421825 -127115434 + Lx2 LINE L1 6619 6997 0 1 778 2497 70 0 9 chr5 25421910 25422244 -127115015 + L1Md_T LINE L1 6252 6582 0 1 778 27 0 0 0 chr5 25422244 25422271 -127114988 + AT_rich Low_complexity Low_complexity 1 27 0 1 778 21 57 0 0 chr5 25422973 25423008 -127114251 + AT_rich Low_complexity Low_complexity 1 35 0 1 785 244 219 0 0 chr5 26324310 26324374 -126212885 + A-rich Low_complexity Low_complexity 1 64 0 1 785 847 284 74 32 chr5 26324430 26324933 -126212326 - BGLII_B LTR ERVK -81 480 39 2 785 262 271 70 70 chr5 26325246 26325389 -126211870 + B3 SINE B2 73 215 -1 3 785 210 167 28 0 chr5 26326234 26326270 -126210989 - B1_Mm SINE Alu -19 128 92 4 785 276 159 23 0 chr5 26326238 26326282 -126210977 - PB1D9 SINE Alu -23 97 53 5 785 262 294 53 35 chr5 26329048 26329161 -126208098 + MER5A DNA MER1_type 1 115 -74 6 785 801 139 0 0 chr5 26329255 26329428 -126207831 + (GA)n Simple_repeat Simple_repeat 2 174 0 7 785 1432 241 49 101 chr5 26332136 26332662 -126204597 - RLTR19 LTR ERVK 0 499 1 8 785 278 308 10 62 chr5 26332720 26332817 -126204442 + PB1D10 SINE Alu 20 111 -6 9 785 237 260 202 8 chr5 26335333 26335457 -126201802 - B1F SINE Alu 0 149 2 1 785 368 265 10 0 chr5 26335856 26335958 -126201301 + RLTR19 LTR ERVK 1 103 -396 1 785 1460 140 4 17 chr5 26336149 26336381 -126200878 + L1_Mus1 LINE L1 6299 6527 -40 1 785 2169 114 12 39 chr5 26337057 26337393 -126199866 + ORR1A2 LTR MaLR 1 327 0 1 785 395 157 11 0 chr5 26337767 26337856 -126199403 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 785 7311 94 4 13 chr5 26338244 26339289 -126197970 - L1Md_F2 LINE L1 -1 6581 5537 1 785 1618 128 4 0 chr5 26339290 26339547 -126197712 + Lx2 LINE L1 6739 6996 -1 1 785 26 0 0 0 chr5 26339549 26339575 -126197684 + AT_rich Low_complexity Low_complexity 1 26 0 1 785 858 199 62 14 chr5 26340624 26340833 -126196426 + Lx3A LINE L1 6758 6976 -5 1 785 237 320 58 0 chr5 26341300 26341403 -126195856 + MIRb SINE MIR 90 198 -70 1 785 182 143 0 51 chr5 26342599 26342658 -126194601 + A-rich Low_complexity Low_complexity 1 56 0 2 785 774 238 199 16 chr5 26342892 26343264 -126193995 - BGLII_B LTR ERVK 0 441 2 2 785 219 248 70 70 chr5 26343515 26343658 -126193601 + B3 SINE B2 73 215 -1 2 785 234 217 22 0 chr5 26344496 26344542 -126192717 - PB1D9 SINE Alu -21 99 53 2 786 216 279 25 12 chr5 26347298 26347378 -126189881 + MER5A DNA MER1_type 1 81 -108 2 786 528 161 0 0 chr5 26347496 26347620 -126189639 + GA-rich Low_complexity Low_complexity 1 124 0 2 786 1446 246 45 100 chr5 26350299 26350827 -126186432 - RLTR19 LTR ERVK 0 499 1 2 786 245 319 10 62 chr5 26350885 26350982 -126186277 + PB1D10 SINE Alu 20 111 -6 2 786 326 274 10 0 chr5 26351893 26351995 -126185264 + RLTR19 LTR ERVK 1 103 -396 2 786 1282 159 4 42 chr5 26352186 26352422 -126184837 + L1_Mus1 LINE L1 6299 6525 -42 2 786 2185 108 12 39 chr5 26353108 26353444 -126183815 + ORR1A2 LTR MaLR 1 327 0 3 786 470 137 11 0 chr5 26353819 26353914 -126183345 + (TG)n Simple_repeat Simple_repeat 1 96 0 3 786 7290 94 3 15 chr5 26354302 26355351 -126181908 - L1Md_F2 LINE L1 0 6582 5537 3 786 1536 136 4 30 chr5 26355352 26355617 -126181642 + Lx2 LINE L1 6739 6996 -1 3 786 21 0 0 0 chr5 26355617 26355638 -126181621 + AT_rich Low_complexity Low_complexity 1 21 0 3 786 21 57 0 0 chr5 26356423 26356458 -126180801 + AT_rich Low_complexity Low_complexity 1 35 0 3 786 840 183 55 11 chr5 26356646 26356828 -126180431 + Lx3A LINE L1 6758 6947 -34 3 786 240 284 68 10 chr5 26357320 26357423 -126179836 + MIRb SINE MIR 90 198 -70 3 786 4350 29 2 0 chr5 26358570 26359062 -126178197 + MT2_Mm LTR ERVL 1 493 0 3 786 728 273 153 27 chr5 26359227 26359755 -126177504 - BGLII_B LTR ERVK -80 481 2 3 786 231 260 84 84 chr5 26360021 26360164 -126177095 + B3 SINE B2 73 215 -1 4 786 233 186 23 0 chr5 26361013 26361056 -126176203 - PB1D9 SINE Alu -23 97 54 4 786 209 238 0 90 chr5 26361194 26361305 -126175954 + A-rich Low_complexity Low_complexity 3 103 0 4 786 202 279 25 12 chr5 26363821 26363901 -126173358 + MER5A DNA MER1_type 1 81 -108 4 786 852 119 0 0 chr5 26364019 26364178 -126173081 + (GA)n Simple_repeat Simple_repeat 1 159 0 4 786 1372 255 48 95 chr5 26366880 26367404 -126169855 - RLTR19 LTR ERVK 0 499 1 4 786 244 254 13 78 chr5 26367482 26367559 -126169700 + PB1D10 SINE Alu 40 111 -6 4 786 388 245 10 0 chr5 26368470 26368572 -126168687 + RLTR19 LTR ERVK 1 103 -396 4 786 1388 134 0 51 chr5 26368763 26368999 -126168260 + L1Md_F2 LINE L1 6306 6529 -53 4 786 2162 114 38 0 chr5 26369685 26370000 -126167259 + ORR1A2 LTR MaLR 1 327 0 4 786 299 78 20 0 chr5 26370378 26370429 -126166830 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 786 2351 72 116 17 chr5 26370710 26371065 -126166194 - RLTR10 LTR ERVK 0 390 1 5 786 8796 29 0 3 chr5 26371067 26372065 -126165194 - RLTR10-int LTR ERVK -3 1984 990 5 786 615 331 28 28 chr5 26372147 26372570 -126164689 - RLTR10-int LTR ERVK -5987 1594 1172 5 786 5534 35 9 69 chr5 26372595 26373330 -126163929 - RLTR10-int LTR ERVK -995 992 302 5 786 2390 66 119 11 chr5 26373330 26373682 -126163577 - RLTR10 LTR ERVK 0 390 1 5 786 7455 87 4 14 chr5 26373800 26374847 -126162412 - L1Md_F2 LINE L1 0 6582 5537 5 786 1583 121 4 30 chr5 26374848 26375113 -126162146 + Lx2 LINE L1 6739 6996 -1 5 786 25 0 0 0 chr5 26375115 26375140 -126162119 + AT_rich Low_complexity Low_complexity 1 25 0 5 786 862 190 68 5 chr5 26376179 26376385 -126160874 + Lx3A LINE L1 6758 6976 -5 5 786 225 320 58 0 chr5 26376852 26376955 -126160304 + MIRb SINE MIR 90 198 -70 5 786 710 282 57 31 chr5 26378260 26378743 -126158516 - BGLII_B LTR ERVK -80 481 39 5 786 256 248 70 70 chr5 26379077 26379220 -126158039 + B3 SINE B2 73 215 -1 5 786 214 227 23 0 chr5 26380070 26380114 -126157145 - PB1D9 SINE Alu -23 97 53 6 786 209 238 0 90 chr5 26380250 26380361 -126156898 + A-rich Low_complexity Low_complexity 3 103 0 6 786 221 279 25 12 chr5 26382880 26382960 -126154299 + MER5A DNA MER1_type 1 81 -108 6 786 632 77 10 0 chr5 26383107 26383211 -126154048 + (GA)n Simple_repeat Simple_repeat 1 105 0 6 786 1469 245 41 98 chr5 26385918 26386430 -126150829 - RLTR19 LTR ERVK 0 499 17 6 786 225 242 0 114 chr5 26386532 26386602 -126150657 + PB1D10 SINE Alu 50 111 -6 6 786 366 255 10 0 chr5 26387512 26387614 -126149645 + RLTR19 LTR ERVK 1 103 -396 6 786 1501 123 4 17 chr5 26387805 26388037 -126149222 + L1_Mus1 LINE L1 6299 6527 -40 6 786 2255 99 12 39 chr5 26388722 26389058 -126148201 + ORR1A2 LTR MaLR 1 327 0 6 786 353 156 13 0 chr5 26389433 26389510 -126147749 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 786 7185 99 12 10 chr5 26389898 26390944 -126146315 - L1Md_F2 LINE L1 -1 6581 5537 7 786 1576 122 12 8 chr5 26390945 26391202 -126146057 + Lx2 LINE L1 6739 6996 -1 7 786 23 0 0 0 chr5 26391204 26391227 -126146032 + AT_rich Low_complexity Low_complexity 1 23 0 7 786 857 172 55 11 chr5 26392275 26392457 -126144802 + Lx3A LINE L1 6758 6947 -34 7 786 240 284 68 10 chr5 26392949 26393052 -126144207 + MIRb SINE MIR 90 198 -70 7 786 4369 28 0 0 chr5 26394198 26394691 -126142568 + MT2_Mm LTR ERVL 1 493 0 7 786 1381 251 47 102 chr5 26395363 26395515 -126141744 - RLTR19 LTR ERVK 0 499 360 7 786 1594 43 0 0 chr5 26395515 26395700 -126141559 + B2_Mm1t SINE B2 2 186 -7 7 786 1381 251 47 102 chr5 26395700 26395764 -126141495 - RLTR19 LTR ERVK -140 359 318 7 786 207 0 0 0 chr5 26395764 26395787 -126141472 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 786 1381 251 47 102 chr5 26395787 26396097 -126141162 - RLTR19 LTR ERVK -182 317 1 7 786 3801 35 5 0 chr5 26398012 26398446 -126138813 + RLTR10C LTR ERVK 1 436 0 7 786 2006 76 15 4 chr5 26398446 26398710 -126138549 + MMERVK10C-int LTR ERVK 1 267 -7314 7 786 302 182 0 76 chr5 26398755 26398886 -126138373 + A-rich Low_complexity Low_complexity 2 122 0 8 786 2102 45 71 2 chr5 26398886 26399368 -126137891 + MMERVK10C-int LTR ERVK 566 887 -1100 7 786 8820 42 1 0 chr5 26399361 26400381 -126136878 + MMERVK10C-int LTR ERVK 4790 5810 -1771 7 786 8107 42 0 1 chr5 26400372 26401304 -126135955 + MMERVK10C-int LTR ERVK 6651 7581 0 7 786 3778 37 5 0 chr5 26401304 26401738 -126135521 + RLTR10C LTR ERVK 1 436 0 7 786 261 252 202 8 chr5 26402487 26402611 -126134648 - B1F SINE Alu 0 149 2 8 786 401 235 10 0 chr5 26403014 26403116 -126134143 + RLTR19 LTR ERVK 1 103 -396 8 786 666 77 0 42 chr5 26403307 26403402 -126133857 + L1_Mus1 LINE L1 6299 6389 -178 8 786 5810 84 4 1 chr5 26403402 26404205 -126133054 - L1Md_F2 LINE L1 -231 6351 5537 8 786 1625 128 4 0 chr5 26404206 26404463 -126132796 + Lx2 LINE L1 6739 6996 -1 8 786 817 204 62 14 chr5 26405212 26405421 -126131838 + Lx3A LINE L1 6758 6976 -5 8 786 263 301 58 0 chr5 26405886 26405989 -126131270 + MIRb SINE MIR 90 198 -70 8 786 4977 78 2 0 chr5 26406777 26407451 -126129808 - L1Md_F2 LINE L1 -361 6221 5537 8 786 1592 114 16 8 chr5 26407452 26407708 -126129551 + Lx2 LINE L1 6739 6996 -1 8 786 25 0 0 0 chr5 26407710 26407735 -126129524 + AT_rich Low_complexity Low_complexity 1 25 0 9 786 198 0 0 0 chr5 26408830 26408852 -126128407 + (A)n Simple_repeat Simple_repeat 1 22 0 9 786 720 248 208 22 chr5 26409130 26409501 -126127758 - BGLII_B LTR ERVK 0 441 2 9 786 227 256 181 67 chr5 26409718 26409911 -126127348 + B3 SINE B2 1 215 -1 9 786 212 227 23 0 chr5 26410736 26410780 -126126479 - PB1D9 SINE Alu -23 97 53 9 786 202 279 25 12 chr5 26413546 26413626 -126123633 + MER5A DNA MER1_type 1 81 -108 9 786 1140 84 0 0 chr5 26413752 26413931 -126123328 + (GA)n Simple_repeat Simple_repeat 2 180 0 9 786 1395 247 47 101 chr5 26416630 26417157 -126120102 - RLTR19 LTR ERVK 0 499 1 9 786 235 297 41 62 chr5 26417215 26417312 -126119947 + PB1D7 SINE Alu 20 114 -6 9 786 401 235 10 0 chr5 26418217 26418319 -126118940 + RLTR19 LTR ERVK 1 103 -396 9 786 1443 132 4 17 chr5 26418510 26418742 -126118517 + L1_Mus1 LINE L1 6299 6527 -40 1 786 2264 99 12 39 chr5 26419426 26419762 -126117497 + ORR1A2 LTR MaLR 1 327 0 1 786 347 145 14 0 chr5 26420137 26420206 -126117053 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 786 7019 101 13 10 chr5 26420602 26421647 -126115612 - L1Md_F2 LINE L1 -1 6581 5537 1 786 1576 126 12 8 chr5 26421648 26421905 -126115354 + Lx2 LINE L1 6739 6996 -1 1 786 855 163 141 10 chr5 26422963 26423161 -126114098 + Lx3A LINE L1 6758 6981 0 1 786 699 285 58 31 chr5 26425048 26425528 -126111731 - BGLII_B LTR ERVK -82 479 39 1 786 242 241 70 70 chr5 26425861 26426004 -126111255 + B3 SINE B2 73 215 -1 1 786 234 241 18 18 chr5 26426844 26426899 -126110360 - PB1D9 SINE Alu -13 107 53 1 786 221 279 25 12 chr5 26429665 26429745 -126107514 + MER5A DNA MER1_type 1 81 -108 1 786 663 160 0 0 chr5 26429863 26430019 -126107240 + GA-rich Low_complexity Low_complexity 1 156 0 1 786 1476 241 43 98 chr5 26432699 26433210 -126104049 - RLTR19 LTR ERVK 0 499 17 1 786 401 235 10 0 chr5 26434293 26434395 -126102864 + RLTR19 LTR ERVK 1 103 -396 1 786 1505 123 4 17 chr5 26434586 26434818 -126102441 + L1_Mus1 LINE L1 6299 6527 -40 1 786 2255 99 12 39 chr5 26435503 26435839 -126101420 + ORR1A2 LTR MaLR 1 327 0 1 786 353 156 13 0 chr5 26436214 26436291 -126100968 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 786 7094 100 12 10 chr5 26436679 26437725 -126099534 - L1Md_F2 LINE L1 -1 6581 5537 1 786 1600 114 12 8 chr5 26437726 26437983 -126099276 + Lx2 LINE L1 6739 6996 -1 1 786 894 149 146 20 chr5 26439052 26439251 -126098008 + Lx3A LINE L1 6758 6981 0 1 786 250 311 58 0 chr5 26439728 26439831 -126097428 + MIRb SINE MIR 90 198 -70 1 786 232 97 0 88 chr5 26441019 26441087 -126096172 + A-rich Low_complexity Low_complexity 1 62 0 1 786 726 279 58 35 chr5 26441143 26441625 -126095634 - BGLII_B LTR ERVK -81 480 39 1 786 240 260 84 84 chr5 26441943 26442086 -126095173 + B3 SINE B2 73 215 -1 1 786 257 159 23 0 chr5 26442935 26442979 -126094280 - PB1D9 SINE Alu -23 97 53 1 786 221 279 25 12 chr5 26445742 26445822 -126091437 + MER5A DNA MER1_type 1 81 -108 1 786 555 112 0 0 chr5 26445949 26446047 -126091212 + (GA)n Simple_repeat Simple_repeat 2 99 0 1 786 1437 244 45 102 chr5 26448758 26449287 -126087972 - RLTR19 LTR ERVK 0 499 1 1 786 239 319 10 62 chr5 26449345 26449442 -126087817 + PB1D10 SINE Alu 20 111 -6 1 786 1937 190 92 20 chr5 26450399 26450844 -126086415 + RLTR19 LTR ERVK 16 492 -7 1 786 1421 58 0 21 chr5 26450883 26451075 -126086184 + L1Md_F3 LINE L1 6383 6570 -14 1 786 435 181 0 118 chr5 26451334 26451453 -126085806 + RMER6B LTR ERVK 12 116 -345 1 786 347 147 260 10 chr5 26451469 26451565 -126085694 + RMER6B LTR ERVK 76 195 -266 1 786 30429 68 1 6 chr5 26451565 26455527 -126081732 + L1Md_F2 LINE L1 1646 5586 -297 1 786 8252 43 6 0 chr5 26455527 26456517 -126080742 + L1Md_F2 LINE L1 5587 6582 0 1 786 1000 122 0 7 chr5 26456562 26456710 -126080549 - B1_Mus1 SINE Alu 0 148 2 1 786 1008 58 15 0 chr5 26456728 26456915 -126080344 - L1_Mus1 LINE L1 0 6567 6427 1 786 499 174 154 74 chr5 26456917 26457066 -126080193 + RMER6B LTR ERVK 284 444 -17 1 786 1529 186 12 24 chr5 26457075 26457411 -126079848 - Lx2A1 LINE L1 0 7008 6677 1 786 17005 177 25 18 chr5 26457411 26461562 -126075697 - Lx2A1 LINE L1 -549 6459 2282 1 786 33889 83 6 6 chr5 26461540 26466618 -126070641 - L1Md_F2 LINE L1 -302 6280 1203 1 786 5498 146 13 29 chr5 26466619 26467560 -126069699 - L1Md_F2 LINE L1 -5384 1232 307 1 786 935 248 36 5 chr5 26468589 26468812 -126068447 + MTEb LTR MaLR 143 372 -7 1 786 934 244 56 121 chr5 26468803 26469143 -126068116 - ORR1E LTR MaLR -41 318 1 1 786 15283 47 6 0 chr5 26470010 26472562 -126064697 - L1Md_F3 LINE L1 -1 6583 4017 1 786 858 284 25 7 chr5 26472823 26473100 -126064159 + L1M2 LINE L1 5311 5592 -720 1 786 517 233 0 22 chr5 26473941 26474121 -126063138 + (TATG)n Simple_repeat Simple_repeat 4 179 0 1 786 829 262 189 0 chr5 26474174 26474418 -126062841 - B4 SINE B4 0 292 3 1 786 1551 157 50 58 chr5 26474661 26475020 -126062239 + ORR1D1 LTR MaLR 1 356 -18 1 786 499 283 77 19 chr5 26475027 26475182 -126062077 - B4A SINE B4 -40 252 89 1 786 351 186 0 67 chr5 26475185 26475260 -126061999 + L1VL4 LINE L1 390 459 -5843 1 786 1386 76 11 0 chr5 26475258 26475443 -126061816 + MusHAL1 LINE L1 401 587 -2767 1 786 2733 48 39 0 chr5 26475443 26475776 -126061483 - ORR1A1 LTR MaLR 0 346 1 1 98 7873 55 57 3 chr5 26475776 26476940 -126060319 - ORR1A1-int LTR MaLR 0 1792 566 1 787 1196 105 10 34 chr5 26476863 26477070 -126060189 - MT2C_Mm LTR ERVL -273 202 1 1 787 6776 70 10 16 chr5 26477070 26478107 -126059152 + MusHAL1 LINE L1 583 1611 -1742 1 787 7430 121 10 1 chr5 26478108 26479481 -126057778 + Lx2 LINE L1 5268 6645 -352 1 787 1337 126 36 18 chr5 26479479 26479698 -126057561 + Lx2 LINE L1 6775 6997 0 1 787 549 269 290 29 chr5 26480394 26480529 -126056730 + Lx8 LINE L1 6809 6969 -504 1 787 630 0 0 0 chr5 26480529 26480599 -126056660 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1 787 549 269 290 29 chr5 26480599 26480804 -126056455 + Lx8 LINE L1 6970 7237 -236 1 787 7537 88 31 9 chr5 26480796 26482061 -126055198 - L1_Mus3 LINE L1 0 6638 5363 1 787 634 112 129 0 chr5 26482061 26482177 -126055082 + L1_Mur2 LINE L1 5213 5343 -534 1 787 512 270 142 13 chr5 26482172 26482397 -126054862 + Lx8 LINE L1 7220 7473 0 1 787 755 214 7 7 chr5 26484971 26485117 -126052142 + B1_Mur1 SINE Alu 3 148 -1 1 787 664 248 12 6 chr5 26485144 26485306 -126051953 - ORR1E-int LTR MaLR -27 1553 1391 1 787 459 330 186 24 chr5 26485349 26485644 -126051615 - ORR1E-int LTR MaLR -494 1086 744 1 787 1499 282 111 30 chr5 26485803 26486435 -126050824 - Lx8 LINE L1 0 7473 6791 1 787 958 248 10 10 chr5 26486437 26486645 -126050614 + B3 SINE B2 3 210 -6 1 787 796 262 107 29 chr5 26486652 26486710 -126050549 - Lx8 LINE L1 -667 6806 6751 1 787 2191 126 12 0 chr5 26486710 26487035 -126050224 - ORR1A4 LTR MaLR 0 329 1 1 787 796 262 107 29 chr5 26487035 26487220 -126050039 - Lx8 LINE L1 -723 6750 6544 1 787 1135 298 121 40 chr5 26487221 26487766 -126049493 - ORR1E-int LTR MaLR -991 589 1 1 787 595 302 41 63 chr5 26487768 26488135 -126049124 - ORR1E LTR MaLR 0 359 1 1 787 729 161 8 0 chr5 26488155 26488279 -126048980 + B1F SINE Alu 7 131 -18 1 787 243 0 0 0 chr5 26488679 26488706 -126048553 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 1 787 557 290 53 0 chr5 26488800 26488969 -126048290 - B3A SINE B2 -20 178 1 1 787 627 269 73 62 chr5 26489106 26489395 -126047864 - B4 SINE B4 0 292 1 1 787 461 220 55 0 chr5 26489423 26489514 -126047745 - B1F SINE Alu -51 98 3 1 787 383 336 98 45 chr5 26489755 26490195 -126047064 - L1M7 LINE L1 -4596 1622 1160 1 787 968 153 46 41 chr5 26490283 26490315 -126046944 - B3A SINE B2 0 198 172 1 787 360 0 0 0 chr5 26490315 26490355 -126046904 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 787 333 0 0 0 chr5 26490355 26490391 -126046868 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 787 968 153 46 41 chr5 26490391 26490554 -126046705 - B3A SINE B2 -27 171 2 1 787 948 268 166 18 chr5 26490895 26491233 -126046026 - MTD LTR MaLR -31 388 1 1 787 306 226 58 35 chr5 26491503 26491590 -126045669 + B4 SINE B4 1 89 -203 1 787 576 0 0 0 chr5 26491957 26492021 -126045238 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 787 432 0 0 0 chr5 26492731 26492779 -126044480 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 787 518 184 34 6 chr5 26493340 26493515 -126043744 + GA-rich Low_complexity Low_complexity 1 180 0 1 787 361 185 33 8 chr5 26493560 26493680 -126043579 + GA-rich Low_complexity Low_complexity 1 123 0 1 787 1801 207 139 38 chr5 26493791 26494324 -126042935 + RMER19C LTR ERVK 1 587 -24 1 787 250 271 65 41 chr5 26494742 26494865 -126042394 - MER77 LTR ERVL -428 179 54 1 787 720 281 15 15 chr5 26495356 26495562 -126041697 - B3 SINE B2 -10 206 1 1 787 2494 206 17 31 chr5 26495832 26496417 -126040842 - RLTR20B3 LTR ERVK 0 577 1 1 787 387 0 0 0 chr5 26496798 26496841 -126040418 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 787 804 236 86 40 chr5 26496845 26497123 -126040136 - B4 SINE B4 0 292 2 1 787 449 352 0 0 chr5 26498721 26498900 -126038359 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 787 411 73 0 0 chr5 26499455 26499510 -126037749 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 787 416 19 19 0 chr5 26499519 26499572 -126037687 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 787 28 0 0 0 chr5 26499849 26499877 -126037382 + AT_rich Low_complexity Low_complexity 1 28 0 1 787 3590 60 21 0 chr5 26500074 26500560 -126036699 + LTRIS2 LTR ERV1 69 564 0 1 787 189 0 0 0 chr5 26500684 26500705 -126036554 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 787 1151 90 0 0 chr5 26501180 26501325 -126035934 + B1_Mus2 SINE Alu 2 146 -1 3 787 182 297 42 52 chr5 26503627 26503723 -126033536 + MIR SINE MIR 50 144 -64 4 787 1591 259 126 30 chr5 26504208 26504741 -126032518 + Lx8 LINE L1 6890 7473 0 5 787 295 200 211 39 chr5 26504761 26504917 -126032342 + L1MA9 LINE L1 6126 6308 -4 6 787 324 0 0 0 chr5 26507806 26507842 -126029417 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 787 198 333 0 12 chr5 26508010 26508095 -126029164 - MIRb SINE MIR -42 226 143 8 787 1272 246 98 15 chr5 26509548 26509883 -126027376 + MTEa LTR MaLR 15 377 -2 9 787 704 250 78 14 chr5 26509885 26510104 -126027155 + MTEa-int LTR MaLR 1 233 -1347 9 787 230 204 0 0 chr5 26510108 26510157 -126027102 + MTEa-int LTR MaLR 542 590 -990 9 787 244 244 21 85 chr5 26510215 26510309 -126026950 + MTEa LTR MaLR 190 277 -102 1 787 275 296 45 36 chr5 26511483 26511595 -126025664 + B4 SINE B4 31 143 -149 1 787 21 36 0 0 chr5 26511872 26511900 -126025359 + AT_rich Low_complexity Low_complexity 1 28 0 1 787 24 32 0 0 chr5 26514655 26514686 -126022573 + AT_rich Low_complexity Low_complexity 1 31 0 1 787 198 143 0 0 chr5 26514693 26514728 -126022531 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 787 688 227 32 69 chr5 26514728 26514917 -126022342 - B3A SINE B2 -16 182 1 1 787 766 47 0 9 chr5 26514925 26515032 -126022227 - B1_Mus2 SINE Alu -41 106 1 1 787 331 113 32 0 chr5 26515715 26515777 -126021482 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 787 22 0 0 0 chr5 26515882 26515904 -126021355 + AT_rich Low_complexity Low_complexity 1 22 0 1 787 284 308 16 41 chr5 26516488 26516610 -126020649 - MLT1K LTR MaLR -13 582 464 1 787 5576 62 0 7 chr5 26518785 26519484 -126017775 + L1Md_F2 LINE L1 5876 6569 -13 2 787 1966 214 22 89 chr5 26519686 26520324 -126016935 + ORR1A3-int LTR MaLR 365 959 -1004 2 787 1942 149 5 29 chr5 26520326 26520697 -126016562 - ORR1B1 LTR MaLR 0 394 1 2 787 4127 117 81 107 chr5 26520697 26521686 -126015573 + ORR1B1-int LTR MaLR 912 1963 0 2 787 1503 151 78 200 chr5 26521686 26522135 -126015124 + ORR1B1 LTR MaLR 1 394 0 2 787 638 300 50 74 chr5 26522235 26522534 -126014725 + B4A SINE B4 1 292 0 2 787 263 235 0 0 chr5 26522536 26522604 -126014655 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 787 538 230 6 6 chr5 26523002 26523177 -126014082 + (CA)n Simple_repeat Simple_repeat 2 176 0 2 787 933 283 31 34 chr5 26523305 26523627 -126013632 - Lx9 LINE L1 -272 7372 7052 2 787 270 319 87 17 chr5 26523979 26524007 -126013252 + B4 SINE B4 1 29 -263 2 787 483 18 0 0 chr5 26524007 26524063 -126013196 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 2 787 270 319 87 17 chr5 26524063 26524149 -126013110 + B4 SINE B4 30 122 -170 2 787 437 84 14 0 chr5 26525211 26525282 -126011977 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 3 787 1507 63 5 20 chr5 26525327 26525522 -126011737 + B2_Mm1t SINE B2 1 192 -1 3 787 204 286 74 28 chr5 26525760 26525868 -126011391 - L2a LINE L2 -32 3394 3282 3 787 746 234 50 9 chr5 26526198 26526418 -126010841 - L1MA6 LINE L1 -8 6292 6064 3 787 272 292 144 50 chr5 26526443 26526623 -126010636 - B3A SINE B2 0 198 2 3 787 411 21 0 0 chr5 26527497 26527545 -126009714 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 787 224 291 60 60 chr5 26527596 26527713 -126009546 + PB1D7 SINE Alu 1 117 -3 3 787 291 114 0 0 chr5 26527900 26527944 -126009315 + (CAT)n Simple_repeat Simple_repeat 3 46 0 3 787 387 297 7 110 chr5 26528096 26528122 -126009137 + RSINE1 SINE B4 1 25 -140 3 787 3456 25 5 0 chr5 26528122 26528516 -126008743 - MTA_Mm LTR MaLR 0 396 1 3 787 387 297 7 110 chr5 26528516 26528644 -126008615 + RSINE1 SINE B4 26 139 -26 3 787 345 284 90 21 chr5 26529003 26529147 -126008112 + Charlie10b DNA MER1_type 59 212 -30 4 787 905 248 9 32 chr5 26531671 26531892 -126005367 - B3 SINE B2 0 216 1 4 787 852 287 52 24 chr5 26531966 26532255 -126005004 + ORR1E LTR MaLR 22 318 -41 4 787 345 336 27 20 chr5 26532452 26532598 -126004661 - LTR53 LTR ERVL -157 362 216 4 787 238 219 16 0 chr5 26532670 26532734 -126004525 + ORR1E LTR MaLR 71 135 -224 4 787 4284 104 119 107 chr5 26534517 26535409 -126001850 + RMER17A2 LTR ERVK 1 903 -3 4 787 769 247 115 26 chr5 26535751 26536055 -126001204 + L1MA6 LINE L1 5964 6294 -6 4 787 387 0 0 0 chr5 26536187 26536230 -126001029 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 787 799 175 82 24 chr5 26536292 26536462 -126000797 - ORR1D1 LTR MaLR 0 374 195 4 787 1152 68 14 0 chr5 26538294 26538441 -125998818 - B1_Mur4 SINE Alu 0 150 2 4 787 21 36 0 0 chr5 26538926 26538954 -125998305 + AT_rich Low_complexity Low_complexity 1 28 0 5 787 234 287 32 11 chr5 26539000 26539095 -125998164 + L1MC4a LINE L1 6627 6723 -1159 5 787 252 22 21 43 chr5 26540420 26540467 -125996792 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 5 787 405 306 32 48 chr5 26540761 26540950 -125996309 - MER5A DNA MER1_type -3 186 1 5 787 683 255 49 0 chr5 26541930 26542114 -125995145 + B4A SINE B4 24 216 -76 5 787 306 0 0 0 chr5 26542114 26542148 -125995111 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 787 786 268 80 10 chr5 26542256 26542514 -125994745 - MLT1A1 LTR MaLR -131 277 1 5 787 530 311 34 0 chr5 26543237 26543414 -125993845 + B4 SINE B4 91 273 -19 5 787 399 113 0 0 chr5 26543450 26543512 -125993747 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 787 447 284 172 0 chr5 26544128 26544262 -125992997 - RSINE1 SINE B4 -4 161 5 5 787 369 0 0 0 chr5 26544571 26544612 -125992647 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 787 539 283 267 9 chr5 26544614 26544831 -125992428 - B4A SINE B4 -17 275 3 6 787 293 206 39 0 chr5 26544906 26545008 -125992251 + CT-rich Low_complexity Low_complexity 1 106 0 6 787 23 0 0 0 chr5 26545571 26545594 -125991665 + AT_rich Low_complexity Low_complexity 1 23 0 6 787 5870 57 43 16 chr5 26545594 26545743 -125991516 - MusHAL1 LINE L1 -4 2708 2570 6 787 215 31 0 30 chr5 26545743 26545776 -125991483 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 787 1165 37 0 0 chr5 26545776 26545911 -125991348 - B1_Mus1 SINE Alu -13 135 1 6 787 5870 57 43 16 chr5 26545911 26546567 -125990692 - MusHAL1 LINE L1 -143 2569 1881 6 787 765 274 225 10 chr5 26546571 26546874 -125990385 - L1MB7 LINE L1 -122 6062 5685 6 787 297 0 0 0 chr5 26546874 26546907 -125990352 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 787 765 274 225 10 chr5 26546907 26547012 -125990247 - L1MB7 LINE L1 -500 5684 5567 6 787 630 237 79 0 chr5 26547026 26547165 -125990094 - B3 SINE B2 -66 150 1 6 787 620 274 56 28 chr5 26547168 26547382 -125989877 - B4A SINE B4 -64 228 9 7 787 317 222 192 0 chr5 26547407 26547506 -125989753 - L1MB7 LINE L1 -712 5472 5355 6 787 1080 256 89 9 chr5 26547619 26547946 -125989313 - ORR1E LTR MaLR -6 353 1 7 787 322 263 106 28 chr5 26549836 26549977 -125987282 - L1MB8 LINE L1 -2 6176 6025 7 787 240 311 110 106 chr5 26551493 26551766 -125985493 - MTEa LTR MaLR -2 377 104 7 787 346 0 0 0 chr5 26552567 26552612 -125984647 - L1_Mus2 LINE L1 0 6566 6522 7 787 1519 49 11 0 chr5 26552612 26552795 -125984464 + L1_Mus1 LINE L1 6098 6282 -285 7 787 3580 255 29 21 chr5 26554030 26554975 -125982284 - Lx9 LINE L1 -262 7382 6431 7 787 444 82 0 0 chr5 26555071 26555132 -125982127 + (GA)n Simple_repeat Simple_repeat 1 61 0 7 787 647 281 167 31 chr5 26555268 26555525 -125981734 - B4A SINE B4 0 292 1 7 787 726 255 66 0 chr5 26556398 26556594 -125980665 - B3 SINE B2 0 216 8 7 787 594 121 26 0 chr5 26557869 26557985 -125979274 + (TC)n Simple_repeat Simple_repeat 1 119 0 8 787 259 239 146 11 chr5 26558050 26558139 -125979120 - B3A SINE B2 -97 101 1 8 787 890 102 36 14 chr5 26560474 26560614 -125976645 + Lx5 LINE L1 5733 5875 -1175 8 787 1363 175 106 43 chr5 26560618 26560947 -125976312 + Lx4B LINE L1 6705 7054 -4 8 787 198 234 0 21 chr5 26561295 26561343 -125975916 - MIR SINE MIR -107 155 109 8 787 315 0 0 0 chr5 26562400 26562435 -125974824 + (TTA)n Simple_repeat Simple_repeat 2 36 0 8 787 1013 276 83 8 chr5 26562470 26562534 -125974725 - B4 SINE B4 -4 288 220 8 787 381 22 0 0 chr5 26562534 26562580 -125974679 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 8 787 1013 276 83 8 chr5 26562580 26562781 -125974478 - B4 SINE B4 -73 219 3 8 787 342 45 0 0 chr5 26562837 26562881 -125974378 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 787 242 301 52 31 chr5 26563234 26563330 -125973929 - MER20 DNA MER1_type 0 219 122 8 787 357 71 14 28 chr5 26564010 26564082 -125973177 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 9 787 686 247 21 43 chr5 26564460 26564646 -125972613 - B3A SINE B2 -16 182 1 9 787 235 320 78 51 chr5 26564651 26564908 -125972351 - L1MEf LINE L1 -4878 1322 1059 9 787 263 303 18 0 chr5 26564981 26565090 -125972169 + L1MD LINE L1 2322 2432 -3714 9 787 432 0 0 0 chr5 26566415 26566463 -125970796 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 787 346 309 68 91 chr5 26566620 26566916 -125970343 - ORR1E LTR MaLR -63 296 8 9 787 1671 146 86 26 chr5 26568275 26568614 -125968645 + ORR1B2 LTR MaLR 1 359 -8 9 787 520 310 88 5 chr5 26568626 26568843 -125968416 - Tigger7 DNA MER2_type -1916 575 341 9 787 427 282 29 64 chr5 26568828 26568968 -125968291 + MTEa LTR MaLR 18 152 -227 9 787 234 250 26 65 chr5 26569081 26569158 -125968101 + MTEa LTR MaLR 281 354 -25 9 787 788 328 93 20 chr5 26569181 26569483 -125967776 - Tigger7 DNA MER2_type -2163 328 5 9 787 519 291 141 25 chr5 26569864 26570171 -125967088 - ORR1E LTR MaLR -8 371 1 9 787 2209 323 111 35 chr5 26570171 26571393 -125965866 - ORR1E-int LTR MaLR -53 1527 212 9 787 476 247 230 0 chr5 26571424 26571598 -125965661 - B3 SINE B2 0 216 3 1 787 17294 70 1 0 chr5 26572168 26574435 -125962824 - L1_Mm LINE L1 -1970 3913 1646 1 787 680 153 25 219 chr5 26574435 26574677 -125962582 - RMER6B LTR ERVK -266 195 1 1 787 1400 80 0 0 chr5 26574927 26575115 -125962144 - L1Md_F3 LINE L1 -14 6570 6383 1 787 1923 190 92 25 chr5 26575154 26575601 -125961658 - RLTR19 LTR ERVK -7 492 16 1 787 37128 33 2 8 chr5 26576086 26581292 -125955967 + L1Md_T LINE L1 420 5586 -297 1 787 8555 32 1 1 chr5 26581293 26582288 -125954971 + L1Md_T LINE L1 5588 6582 0 1 787 227 330 10 62 chr5 26582772 26582869 -125954390 - PB1D10 SINE Alu -6 111 20 1 787 1423 228 57 115 chr5 26582927 26583457 -125953802 + RLTR19 LTR ERVK 1 499 0 1 787 417 39 0 0 chr5 26586112 26586163 -125951096 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 1 787 221 279 25 12 chr5 26586310 26586390 -125950869 - MER5A DNA MER1_type -108 81 1 1 787 210 238 0 82 chr5 26588905 26589015 -125948244 + T-rich Low_complexity Low_complexity 3 103 0 1 787 241 182 23 0 chr5 26589153 26589197 -125948062 + PB1D9 SINE Alu 53 97 -23 1 787 227 256 184 53 chr5 26590053 26590243 -125947016 - B3 SINE B2 -1 215 1 1 787 650 251 208 22 chr5 26590460 26590831 -125946428 + BGLII_B LTR ERVK 2 441 0 1 787 234 0 0 0 chr5 26591099 26591125 -125946134 + (T)n Simple_repeat Simple_repeat 1 26 0 1 787 261 311 58 0 chr5 26592321 26592424 -125944835 - MIRb SINE MIR -70 198 90 1 787 951 129 137 15 chr5 26592910 26593107 -125944152 - Lx3A LINE L1 -3 6978 6758 1 787 22 0 0 0 chr5 26594156 26594178 -125943081 + AT_rich Low_complexity Low_complexity 1 22 0 1 787 1552 115 19 12 chr5 26594180 26594436 -125942823 - Lx2 LINE L1 -1 6996 6739 1 787 338 75 0 0 chr5 26594437 26594477 -125942782 + L1Md_F2 LINE L1 5537 5576 -307 1 787 7421 84 4 16 chr5 26594477 26595484 -125941775 + L1Md_F2 LINE L1 5588 6582 0 1 787 431 151 11 0 chr5 26595877 26595970 -125941289 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 787 2245 102 12 39 chr5 26596345 26596681 -125940578 - ORR1A2 LTR MaLR 0 327 1 1 787 235 192 58 0 chr5 26598259 26598311 -125938948 + B4A SINE B4 229 283 -9 1 787 476 214 23 0 chr5 26598341 26598514 -125938745 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 787 2254 211 7 53 chr5 26599233 26599813 -125937446 + RLTR31_Mur LTR ERVK 1 553 0 1 787 3171 173 3 11 chr5 26600722 26601289 -125935970 - RLTR20B1 LTR ERVK 0 563 1 1 787 5077 123 15 1 chr5 26601404 26602127 -125935132 + RMER19A LTR ERVK 1 733 -4 1 787 8716 147 42 1 chr5 26602131 26603506 -125933753 + MurERV4_19-int LTR ERVK 1 1431 -4349 1 787 3809 120 40 3 chr5 26603506 26604101 -125933158 - RMER19A LTR ERVK -72 665 49 1 787 212 77 0 25 chr5 26604102 26604142 -125933117 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 787 279 0 0 0 chr5 26604143 26604174 -125933085 + (CCA)n Simple_repeat Simple_repeat 1 31 0 1 787 274 132 19 0 chr5 26604174 26604227 -125933032 - RMER19A LTR ERVK -683 54 1 1 787 220 164 0 35 chr5 26604510 26604567 -125932692 + (TGG)n Simple_repeat Simple_repeat 3 57 0 1 787 363 175 25 0 chr5 26604588 26604708 -125932551 + (TG)n Simple_repeat Simple_repeat 2 124 0 1 787 216 0 0 0 chr5 26605124 26605148 -125932111 + (CCCA)n Simple_repeat Simple_repeat 4 27 0 1 787 552 296 81 10 chr5 26605148 26605346 -125931913 - Lx8 LINE L1 -322 7151 6940 1 787 492 212 42 8 chr5 26605833 26605952 -125931307 + RMER5 LTR ERV1 396 518 -16 1 788 241 225 141 0 chr5 26609351 26609422 -125927837 + L1MD LINE L1 5232 5312 -834 1 788 262 237 109 9 chr5 26609675 26609810 -125927449 + L1MD2 LINE L1 6168 6272 -87 1 788 421 171 186 8 chr5 26609855 26609979 -125927280 - L1MA9 LINE L1 -153 6159 6014 1 788 253 327 106 26 chr5 26610325 26610476 -125926783 + L1MA6 LINE L1 6113 6275 -25 1 788 876 294 52 8 chr5 26610498 26610765 -125926494 + B4A SINE B4 2 280 -12 1 788 480 77 0 0 chr5 26610776 26610841 -125926418 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 788 1598 157 3 68 chr5 26610990 26611311 -125925948 + MTD LTR MaLR 1 300 -119 1 788 458 245 47 52 chr5 26611311 26611483 -125925776 + MTD LTR MaLR 247 417 -2 1 788 402 21 0 0 chr5 26611595 26611642 -125925617 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 788 21 0 0 0 chr5 26612008 26612029 -125925230 + AT_rich Low_complexity Low_complexity 1 21 0 1 788 778 154 20 53 chr5 26612035 26612186 -125925073 - B1_Mus2 SINE Alu -1 146 1 1 788 2180 119 25 0 chr5 26613049 26613368 -125923891 - ORR1A2 LTR MaLR 0 327 1 1 788 8666 154 149 18 chr5 26613368 26615104 -125922155 - ORR1A2-int LTR MaLR 0 1963 1 1 788 2150 113 25 3 chr5 26615104 26615424 -125921835 - ORR1A2 LTR MaLR 0 327 1 1 788 353 239 95 69 chr5 26615574 26615763 -125921496 - Lx8 LINE L1 -28 7445 7252 1 788 1094 287 38 14 chr5 26616283 26616650 -125920609 + RCHARR1 DNA MER1_type 3 378 -596 1 788 495 0 0 0 chr5 26616670 26616725 -125920534 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1 788 243 0 0 0 chr5 26616780 26616807 -125920452 + (TA)n Simple_repeat Simple_repeat 2 28 0 1 788 441 0 0 0 chr5 26616807 26616855 -125920404 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 788 579 321 32 5 chr5 26616888 26617104 -125920155 + Lx9 LINE L1 7133 7354 -290 1 788 255 205 115 0 chr5 26617667 26617745 -125919514 + LTR33A LTR ERVL 431 517 -3 1 788 398 330 39 20 chr5 26617802 26618044 -125919215 + L1MA5 LINE L1 5991 6213 -87 1 788 192 91 68 0 chr5 26619269 26619313 -125917946 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 788 527 290 45 0 chr5 26619617 26619772 -125917487 - RSINE1 SINE B4 -2 163 2 1 788 297 0 0 0 chr5 26620725 26620758 -125916501 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 788 654 298 112 8 chr5 26620759 26620999 -125916260 - B4A SINE B4 -23 269 5 1 788 905 282 163 3 chr5 26621058 26621371 -125915888 + ORR1D2 LTR MaLR 2 364 -6 1 788 327 171 0 0 chr5 26621652 26621728 -125915531 + GA-rich Low_complexity Low_complexity 2 77 0 1 788 28 71 0 0 chr5 26622500 26622556 -125914703 + AT_rich Low_complexity Low_complexity 1 56 0 1 788 362 309 22 0 chr5 26622676 26622801 -125914458 - Lx8 LINE L1 -1032 6428 6300 1 788 1224 101 0 0 chr5 26622821 26622999 -125914260 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1 788 294 29 0 0 chr5 26623000 26623035 -125914224 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1 788 917 214 16 0 chr5 26623038 26623220 -125914039 - B3 SINE B2 -30 186 2 1 788 316 222 40 0 chr5 26623223 26623322 -125913937 - L1M4c LINE L1 -1734 4642 4540 1 788 233 270 21 43 chr5 26623330 26623423 -125913836 + L1M3 LINE L1 3937 4027 -2113 1 788 299 278 98 23 chr5 26623447 26623620 -125913639 - L1M4c LINE L1 -2090 4286 4101 1 788 971 232 46 39 chr5 26623622 26623882 -125913377 + MTE2a LTR MaLR 1 262 -117 1 788 2909 259 104 68 chr5 26623896 26625029 -125912230 - L1M4c LINE L1 -3570 2806 1629 1 788 3984 43 12 4 chr5 26625029 26625516 -125911743 - L1Md_F3 LINE L1 0 6584 6094 1 788 2909 252 68 87 chr5 26625516 26625874 -125911385 - L1M4c LINE L1 -4756 1628 1274 1 788 6513 97 13 39 chr5 26625874 26626873 -125910386 - Lx3_Mus LINE L1 0 7009 6037 1 788 2909 252 68 87 chr5 26626873 26627059 -125910200 - L1M4c LINE L1 -5111 1273 1080 1 788 662 273 74 136 chr5 26627076 26627466 -125909793 + MTE2a LTR MaLR 9 374 -5 1 788 962 249 112 54 chr5 26628327 26628414 -125908845 - ORR1D2 LTR MaLR -1 369 268 1 788 360 0 0 0 chr5 26628414 26628454 -125908805 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 788 962 249 112 54 chr5 26628454 26628715 -125908544 - ORR1D2 LTR MaLR -103 267 1 1 788 232 265 39 19 chr5 26630008 26630112 -125907147 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 1 788 546 73 49 0 chr5 26630114 26630196 -125907063 - URR1B DNA MER1_type 0 225 140 1 788 2045 156 33 3 chr5 26630676 26631037 -125906222 + ORR1C1 LTR MaLR 7 378 0 1 788 553 352 25 0 chr5 26631490 26631652 -125905607 + B3A SINE B2 1 166 -32 1 788 462 36 0 0 chr5 26631670 26631726 -125905533 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 788 343 325 77 89 chr5 26631770 26632108 -125905151 + Lx8 LINE L1 7140 7473 0 1 788 5176 100 4 4 chr5 26633411 26634131 -125903128 - L1Md_F2 LINE L1 -1 6581 5862 1 788 7878 71 2 3 chr5 26634132 26635711 -125901548 - L1Md_F2 LINE L1 -12 6570 4992 1 788 231 61 0 0 chr5 26635711 26635744 -125901515 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1 788 25142 54 6 1 chr5 26635751 26639650 -125897609 - L1Md_F3 LINE L1 0 6584 2664 1 788 697 288 60 14 chr5 26639924 26640139 -125897120 + MT2A LTR ERVL 209 433 -100 1 788 241 279 47 0 chr5 26640326 26640412 -125896847 + MLT1A0 LTR MaLR 276 365 0 1 788 1065 257 67 17 chr5 26640661 26641006 -125896253 - MTE2b LTR MaLR -17 362 1 1 788 481 284 39 69 chr5 26641634 26641838 -125895421 + L1MA9 LINE L1 5705 5902 -410 1 788 234 278 136 18 chr5 26641904 26642014 -125895245 + L1MA9 LINE L1 6024 6146 -166 1 788 381 22 0 0 chr5 26642022 26642068 -125895191 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 788 216 0 0 0 chr5 26642068 26642091 -125895168 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 788 219 36 0 0 chr5 26642092 26642120 -125895139 + (CAT)n Simple_repeat Simple_repeat 3 30 0 1 788 287 315 129 43 chr5 26642940 26643126 -125894133 + MLT2B1 LTR ERVL 253 454 -66 1 788 3188 77 5 0 chr5 26643133 26643536 -125893723 - MTB_Mm LTR MaLR 0 407 3 1 788 1115 248 61 46 chr5 26644687 26645000 -125892259 + ORR1D2 LTR MaLR 6 323 -47 1 788 226 94 0 0 chr5 26645000 26645032 -125892227 - MT2A LTR ERVL -2 531 500 1 788 305 132 19 0 chr5 26645142 26645195 -125892064 - ORR1C2 LTR MaLR -3 381 328 1 788 258 167 0 0 chr5 26645225 26645285 -125891974 + GA-rich Low_complexity Low_complexity 1 60 0 1 788 764 216 86 5 chr5 26645285 26645471 -125891788 - ORR1C2 LTR MaLR -183 201 1 1 788 248 174 22 0 chr5 26645897 26645943 -125891316 + B1F SINE Alu 87 133 -16 1 788 180 0 0 0 chr5 26646690 26646710 -125890549 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 788 213 39 0 0 chr5 26647983 26648009 -125889250 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 788 217 211 0 0 chr5 26648009 26648047 -125889212 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 788 523 281 180 65 chr5 26648076 26648291 -125888968 - MTEa LTR MaLR 0 379 195 2 788 4562 144 25 12 chr5 26648291 26649090 -125888169 + RMER17D2 LTR ERVK 1 809 0 2 788 523 267 225 42 chr5 26649090 26649237 -125888022 - MTEa LTR MaLR -185 194 3 2 788 209 233 17 0 chr5 26649876 26649936 -125887323 + (TAAA)n Simple_repeat Simple_repeat 1 61 0 2 788 315 0 0 0 chr5 26650026 26650061 -125887198 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 788 678 214 57 0 chr5 26650066 26650206 -125887053 - B3A SINE B2 -50 148 1 2 788 928 168 107 56 chr5 26650500 26650526 -125886733 - L1_Mus3 LINE L1 0 6638 6622 2 788 5893 88 1 0 chr5 26650526 26651315 -125885944 - L1_Mus1 LINE L1 0 6567 5778 2 788 13044 96 6 1 chr5 26651315 26653885 -125883374 - L1_Mus1 LINE L1 -11 6556 3975 2 788 2743 67 93 3 chr5 26653885 26654262 -125882997 - RLTR10A LTR ERVK 0 411 1 2 788 4982 198 112 59 chr5 26654262 26655860 -125881399 - RLTR10-int LTR ERVK -1 1986 304 2 788 2773 56 99 0 chr5 26655862 26656235 -125881024 - RLTR10A LTR ERVK 0 411 2 2 788 8467 108 14 3 chr5 26656238 26657496 -125879763 - L1_Mus1 LINE L1 -1905 3978 2708 2 788 5602 75 3 22 chr5 26657480 26658220 -125879039 - L1VL1 LINE L1 -5648 774 49 2 788 480 280 92 64 chr5 26658740 26658963 -125878296 + MTD LTR MaLR 18 222 -157 2 788 354 23 0 0 chr5 26658963 26659006 -125878253 + (TTG)n Simple_repeat Simple_repeat 3 45 0 2 788 475 259 117 87 chr5 26659006 26659160 -125878099 + MTD LTR MaLR 223 374 -5 2 788 270 224 35 76 chr5 26659161 26659306 -125877953 + RLTR15 LTR ERVK 1 139 -220 2 788 234 0 0 0 chr5 26659306 26659332 -125877927 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 788 7761 13 0 1 chr5 26659673 26660541 -125876718 + L1Md_A LINE L1 4720 5586 -297 2 788 9043 12 0 0 chr5 26660541 26661537 -125875722 + L1Md_A LINE L1 5587 6582 0 2 788 2325 108 62 30 chr5 26661738 26662109 -125875150 + RLTR9A2 LTR ERVK 1 383 0 2 788 698 289 109 38 chr5 26662445 26662685 -125874574 - L1ME1 LINE L1 -2 6177 5921 2 788 1796 141 183 0 chr5 26662685 26663018 -125874241 + ORR1B1 LTR MaLR 1 394 0 2 788 698 259 118 18 chr5 26663018 26663210 -125874049 - L1ME1 LINE L1 -259 5920 5704 2 788 655 214 78 82 chr5 26665350 26665569 -125871690 + ID_B1 SINE B4 1 218 -6 2 788 940 223 64 0 chr5 26665797 26665999 -125871260 - B3 SINE B2 0 216 2 2 788 296 0 91 18 chr5 26666480 26666535 -125870724 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 788 584 259 7 20 chr5 26667050 26667196 -125870063 + RSINE1 SINE B4 3 146 -19 2 788 369 109 0 0 chr5 26667219 26667274 -125869985 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 788 1091 252 52 62 chr5 26667742 26668044 -125869215 + MTE2a LTR MaLR 11 326 -93 2 788 1078 156 63 54 chr5 26668044 26668072 -125869187 + URR1B DNA MER1_type 1 42 -183 2 788 270 0 0 0 chr5 26668072 26668102 -125869157 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 788 1078 156 63 54 chr5 26668102 26668296 -125868963 + URR1B DNA MER1_type 43 225 0 2 788 1091 227 46 64 chr5 26668296 26668397 -125868862 + MTE2a LTR MaLR 288 379 0 2 788 465 219 85 8 chr5 26668992 26669121 -125868138 + B1F2 SINE Alu 2 140 -9 2 788 258 305 0 0 chr5 26669890 26669949 -125867310 + polypurine Low_complexity Low_complexity 1 59 0 2 788 516 305 48 6 chr5 26670332 26670500 -125866759 + B4A SINE B4 2 176 -116 2 788 421 220 105 8 chr5 26670924 26671057 -125866202 - MT2A LTR ERVL 0 533 388 2 788 261 0 0 0 chr5 26671468 26671497 -125865762 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 788 831 253 125 45 chr5 26672697 26673032 -125864227 - MTD LTR MaLR -37 382 21 2 788 4589 166 36 44 chr5 26673252 26674156 -125863103 - RMER19B LTR ERVK 0 902 6 2 788 1216 204 119 34 chr5 26674380 26674700 -125862559 - ORR1D2 LTR MaLR -23 347 1 2 788 639 297 23 39 chr5 26674701 26674960 -125862299 + MER2 DNA MER2_type 90 344 -1 2 788 1092 269 77 6 chr5 26675240 26675551 -125861708 + MTE2b LTR MaLR 8 340 -39 2 788 553 277 154 0 chr5 26676813 26677033 -125860226 + MER2 DNA MER2_type 10 263 -82 2 788 446 280 63 103 chr5 26677052 26677275 -125859984 - B3 SINE B2 -1 215 2 2 788 783 338 40 4 chr5 26677620 26677896 -125859363 + B4 SINE B4 5 290 -2 2 788 489 256 177 40 chr5 26678223 26678398 -125858861 - ID_B1 SINE B4 -23 201 3 2 788 307 0 0 44 chr5 26679020 26679065 -125858194 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2 788 1024 256 108 32 chr5 26679425 26679796 -125857463 + MTD LTR MaLR 6 404 -15 2 788 678 262 64 8 chr5 26680366 26680558 -125856701 - B3A SINE B2 -8 187 4 2 788 21 36 0 0 chr5 26681530 26681558 -125855701 + AT_rich Low_complexity Low_complexity 1 28 0 2 788 197 201 42 89 chr5 26681568 26681656 -125855603 - MIRm SINE MIR -110 166 80 2 788 305 301 49 76 chr5 26685435 26685579 -125851680 - B4 SINE B4 -145 147 8 2 788 24 0 0 0 chr5 26687920 26687944 -125849315 + GC_rich Low_complexity Low_complexity 1 24 0 2 788 262 335 6 17 chr5 26688949 26689128 -125848131 + (CA)n Simple_repeat Simple_repeat 1 177 0 2 788 1027 79 65 0 chr5 26690295 26690434 -125846825 - B1_Mus1 SINE Alu 0 148 1 2 788 27 49 0 0 chr5 26690582 26690623 -125846636 + AT_rich Low_complexity Low_complexity 1 41 0 2 788 28549 132 16 12 chr5 26690630 26696644 -125840615 - L1_Mus3 LINE L1 -4 6634 609 2 788 610 309 106 0 chr5 26696678 26696914 -125840345 - Lx8 LINE L1 -132 7341 7081 2 788 1069 116 0 0 chr5 26697387 26697534 -125839725 - B1_Mus1 SINE Alu 0 148 2 2 788 207 76 28 83 chr5 26697907 26697979 -125839280 + CT-rich Low_complexity Low_complexity 4 71 0 2 788 912 114 22 11 chr5 26698012 26698190 -125839069 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 788 528 217 17 17 chr5 26698839 26698956 -125838303 + PB1D10 SINE Alu 1 117 0 2 788 252 0 0 0 chr5 26699062 26699090 -125838169 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 788 252 0 0 0 chr5 26700393 26700421 -125836838 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 788 315 0 0 0 chr5 26700421 26700455 -125836804 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 788 345 242 0 0 chr5 26700457 26700585 -125836674 + (TG)n Simple_repeat Simple_repeat 1 128 0 2 788 657 235 13 25 chr5 26701257 26701414 -125835845 - RSINE1 SINE B4 -8 157 3 2 788 305 269 114 9 chr5 26701540 26701645 -125835614 - L1MC1 LINE L1 -10 6323 6208 2 788 1015 125 6 11 chr5 26702065 26702243 -125835016 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 2 788 210 223 19 28 chr5 26704005 26704111 -125833148 + (TATG)n Simple_repeat Simple_repeat 2 106 0 2 788 350 273 134 0 chr5 26704218 26704405 -125832854 - L1MB1 LINE L1 -53 6115 5904 2 788 381 318 32 0 chr5 26704447 26704573 -125832686 + ID_B1 SINE B4 84 213 -11 2 788 200 34 0 33 chr5 26704573 26704603 -125832656 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 788 3730 39 7 0 chr5 26704819 26705252 -125832007 + RLTR10C LTR ERVK 1 436 0 2 788 2055 61 11 4 chr5 26705252 26705517 -125831742 + MMERVK10C-int LTR ERVK 1 267 -7314 2 788 283 184 13 26 chr5 26705599 26705677 -125831582 + A-rich Low_complexity Low_complexity 3 79 0 2 788 317 68 23 0 chr5 26705677 26705721 -125831538 + RLTR10-int LTR ERVK 93 137 -6405 2 788 1955 22 9 4 chr5 26705724 26705957 -125831302 + RLTR10-int LTR ERVK 652 885 -1102 2 788 36033 37 1 0 chr5 26705961 26712237 -125825022 + L1Md_T LINE L1 1 5589 -297 2 788 9119 7 0 0 chr5 26712237 26713233 -125824026 + L1Md_T LINE L1 5590 6585 0 2 788 1767 33 0 0 chr5 26713237 26713449 -125823810 + MMERVK10C-int LTR ERVK 3532 3743 -3838 2 788 8962 34 0 0 chr5 26713442 26714463 -125822796 + MMERVK10C-int LTR ERVK 4790 5810 -1771 2 788 8198 36 0 0 chr5 26714454 26715385 -125821874 + MMERVK10C-int LTR ERVK 6651 7581 0 2 788 3656 42 7 5 chr5 26715385 26715820 -125821439 + RLTR10C LTR ERVK 1 436 0 2 788 1949 117 46 25 chr5 26717191 26717516 -125819743 - Lx LINE L1 -6 6648 6317 2 788 7126 131 14 8 chr5 26717516 26719048 -125818211 - Lx LINE L1 -477 6177 4634 2 788 9572 15 0 0 chr5 26719048 26720122 -125817137 + L1Md_T LINE L1 4513 5586 -297 2 788 8500 39 0 0 chr5 26720122 26721117 -125816142 + L1Md_T LINE L1 5587 6581 -1 2 788 574 272 56 20 chr5 26721138 26721333 -125815926 - Tigger1 DNA MER2_type -1560 858 657 2 788 180 0 0 0 chr5 26721333 26721353 -125815906 + (A)n Simple_repeat Simple_repeat 1 20 0 2 788 793 149 14 28 chr5 26721353 26721498 -125815761 - Lx LINE L1 -1236 4647 4505 2 788 251 299 111 9 chr5 26721498 26721606 -125815653 - MLT1B LTR MaLR -84 306 188 2 788 255 297 0 73 chr5 26721918 26722027 -125815232 - MLT1B LTR MaLR -289 101 1 2 788 437 286 171 35 chr5 26722330 26722587 -125814672 + B4 SINE B4 1 292 0 2 788 225 223 115 21 chr5 26723429 26723525 -125813734 - L1M4 LINE L1 -766 5408 5304 2 788 445 238 252 36 chr5 26723529 26723856 -125813403 - L1M4 LINE L1 -1028 5118 4718 2 788 417 282 30 8 chr5 26723880 26724012 -125813247 + B1F SINE Alu 6 140 -9 2 788 202 139 0 27 chr5 26724311 26724348 -125812911 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 788 544 212 0 14 chr5 26724541 26724680 -125812579 + CT-rich Low_complexity Low_complexity 4 140 0 2 788 1100 87 12 0 chr5 26724686 26724847 -125812412 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 2 788 810 163 15 0 chr5 26724848 26724983 -125812276 - B1_Mur3 SINE Alu -12 137 1 2 788 343 364 68 0 chr5 26725071 26725233 -125812026 + B4 SINE B4 2 174 -118 2 788 507 101 0 0 chr5 26725291 26725370 -125811889 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 788 252 169 14 71 chr5 26725745 26725815 -125811444 - L1MC3 LINE L1 -1692 6303 6238 2 788 236 250 44 22 chr5 26725831 26725921 -125811338 + (TATG)n Simple_repeat Simple_repeat 4 95 0 2 788 1636 196 84 55 chr5 26726072 26726439 -125810820 - ORR1C1 LTR MaLR 0 378 1 2 788 501 347 44 14 chr5 26726554 26726916 -125810343 - L1MC3 LINE L1 -1827 5958 5586 2 788 295 277 140 39 chr5 26727138 26727495 -125809764 - L1MD LINE L1 -3055 3091 2699 2 788 591 246 136 11 chr5 26727804 26728083 -125809176 - L1MA7 LINE L1 -318 5973 5660 2 788 249 278 114 8 chr5 26728114 26728318 -125808941 + L1M2 LINE L1 5386 5611 -689 2 788 1114 263 136 45 chr5 26728339 26729247 -125808012 - L1MCa LINE L1 -3059 3505 2507 2 788 342 0 0 0 chr5 26729290 26729328 -125807931 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 788 853 262 10 0 chr5 26729353 26729555 -125807704 - B4A SINE B4 -6 286 83 2 788 288 77 0 0 chr5 26729873 26729912 -125807347 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 788 236 320 45 64 chr5 26730250 26730624 -125806635 - L1MCa LINE L1 -4866 1885 1519 2 788 268 320 57 32 chr5 26730767 26730925 -125806334 - L1MCa LINE L1 -6052 699 583 2 788 298 0 0 45 chr5 26731410 26731454 -125805805 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 2 788 519 329 28 18 chr5 26731859 26732059 -125805200 + B3A SINE B2 9 216 0 2 788 2974 24 3 0 chr5 26732320 26732660 -125804599 + L1Md_T LINE L1 5246 5586 -297 2 788 8736 29 0 0 chr5 26732660 26733715 -125803544 + L1Md_T LINE L1 5587 6582 0 2 788 581 239 244 80 chr5 26735208 26735288 -125801971 - B4A SINE B4 0 292 222 3 788 656 281 30 54 chr5 26735288 26735491 -125801768 - B3A SINE B2 0 198 1 3 788 581 239 244 80 chr5 26735491 26735660 -125801599 - B4A SINE B4 -71 221 2 3 788 557 14 14 0 chr5 26735895 26735965 -125801294 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 3 788 410 273 42 7 chr5 26735982 26736126 -125801133 - L1MA4 LINE L1 -368 5932 5784 3 788 450 0 0 0 chr5 26736902 26736952 -125800307 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 788 486 245 0 0 chr5 26736952 26737103 -125800156 + (CA)n Simple_repeat Simple_repeat 2 152 0 3 788 3645 41 0 18 chr5 26737686 26737872 -125799387 + L1Md_F2 LINE L1 6129 6313 -269 3 788 4084 19 51 0 chr5 26737872 26738341 -125798918 + MT2_Mm LTR ERVL 1 493 0 3 788 3645 41 0 18 chr5 26738341 26738604 -125798655 + L1Md_F2 LINE L1 6314 6570 -12 3 789 183 204 0 0 chr5 26739101 26739150 -125798109 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 789 255 197 106 16 chr5 26740386 26740472 -125796787 + ORR1E LTR MaLR 270 368 -11 3 789 289 325 64 40 chr5 26740479 26740652 -125796607 + Tigger7 DNA MER2_type 292 468 -2023 3 789 3439 150 38 130 chr5 26742217 26742829 -125794430 + L1_Mus1 LINE L1 492 1080 -5536 3 789 1170 62 7 0 chr5 26742829 26742975 -125794284 - B1_Mus2 SINE Alu 0 147 1 3 789 30918 109 18 20 chr5 26742975 26746808 -125790451 + L1_Mus1 LINE L1 1081 4870 -1013 3 789 1588 89 0 5 chr5 26746808 26747023 -125790236 - L1_Mus1 LINE L1 0 6567 6354 3 789 30918 87 9 6 chr5 26747023 26748718 -125788541 + L1_Mus1 LINE L1 4871 6567 0 3 789 787 229 239 29 chr5 26748841 26749150 -125788109 + MTE2b LTR MaLR 6 379 0 3 789 553 275 25 41 chr5 26749556 26749753 -125787506 - B3A SINE B2 0 198 5 3 789 2688 61 84 60 chr5 26750668 26751071 -125786188 - L1_Mus2 LINE L1 -5 6561 6149 3 789 329 163 38 126 chr5 26751556 26751979 -125785280 + (CAGTA)n Simple_repeat Simple_repeat 1 385 0 3 789 295 269 39 45 chr5 26752432 26752588 -125784671 + L1M5 LINE L1 4531 4685 -1461 3 789 2848 34 0 3 chr5 26752641 26752969 -125784290 + IAPLTR2b LTR ERVK 1 327 0 3 789 276 303 22 0 chr5 26753263 26753352 -125783907 + RSINE1 SINE B4 1 91 -74 3 789 429 20 0 0 chr5 26753437 26753487 -125783772 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 789 489 138 0 0 chr5 26753497 26753577 -125783682 + (TGGA)n Simple_repeat Simple_repeat 3 82 0 3 789 1256 249 40 27 chr5 26753697 26754103 -125783156 - MTD LTR MaLR 0 421 1 3 789 393 303 96 73 chr5 26755047 26755307 -125781952 + RLTR17 LTR ERVK 125 390 -302 3 789 540 258 0 23 chr5 26755817 26755948 -125781311 + RMER1B Other Other 1 128 -938 3 789 2914 255 71 35 chr5 26756024 26756821 -125780438 + RCHARR1 DNA MER1_type 1 851 -123 3 789 443 217 133 44 chr5 26756821 26756956 -125780303 - B1F SINE Alu -2 147 1 3 789 2914 255 71 35 chr5 26756956 26757096 -125780163 + RCHARR1 DNA MER1_type 852 972 -2 3 789 776 239 61 54 chr5 26758172 26758343 -125778916 + RMER15 LTR ERVL 295 466 -109 3 789 1862 171 9 130 chr5 26758343 26758773 -125778486 + ORR1C1 LTR MaLR 1 378 0 3 789 776 239 61 54 chr5 26758773 26758846 -125778413 + RMER15 LTR ERVL 467 540 -35 3 789 360 0 0 0 chr5 26758846 26758886 -125778373 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 789 776 239 61 54 chr5 26758886 26758919 -125778340 + RMER15 LTR ERVL 541 574 -1 3 789 211 203 68 0 chr5 26759348 26759407 -125777852 - MIRc SINE MIR -126 142 80 3 789 385 119 0 0 chr5 26759488 26759555 -125777704 - L1Md_F2 LINE L1 -1 6581 6515 3 789 36737 53 8 8 chr5 26760979 26766287 -125770972 + L1Md_T LINE L1 281 5586 -297 3 789 8248 53 0 0 chr5 26766287 26767283 -125769976 + L1Md_T LINE L1 5587 6582 0 3 789 405 0 0 0 chr5 26767351 26767396 -125769863 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 789 1134 99 5 21 chr5 26768341 26768527 -125768732 + B2_Mm2 SINE B2 9 191 -4 3 789 1442 190 90 6 chr5 26768907 26769105 -125768154 + ORR1D1 LTR MaLR 1 198 -176 3 789 405 102 0 0 chr5 26769105 26769164 -125768095 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 789 1442 190 90 6 chr5 26769164 26769277 -125767982 + ORR1D1 LTR MaLR 199 337 -37 3 789 3303 189 78 26 chr5 26769277 26769935 -125767324 - RLTR17 LTR ERVK 0 692 1 3 789 1789 194 18 35 chr5 26769935 26770335 -125766924 - RMER3D-int LTR ERVK 0 2842 2450 3 789 2505 169 95 41 chr5 26770342 26770899 -125766360 - RMER3D-int LTR ERVK -548 2294 1708 3 789 1396 138 8 36 chr5 26770900 26771148 -125766111 - RLTR17 LTR ERVK -451 241 1 3 789 608 70 12 0 chr5 26771933 26772019 -125765240 + (GA)n Simple_repeat Simple_repeat 2 88 0 3 789 203 298 0 0 chr5 26772551 26772598 -125764661 + polypurine Low_complexity Low_complexity 3 49 0 3 789 705 248 197 30 chr5 26774844 26775143 -125762116 + MTEb LTR MaLR 30 378 -1 3 789 291 277 85 0 chr5 26775707 26775801 -125761458 + MTE2b LTR MaLR 45 146 -233 3 789 270 0 0 0 chr5 26776686 26776716 -125760543 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 789 1026 204 74 10 chr5 26778395 26778598 -125758661 - B3 SINE B2 0 216 1 3 789 1180 296 63 30 chr5 26778607 26779099 -125758160 - Lx8 LINE L1 0 7473 6966 3 789 27 73 0 0 chr5 26779650 26779705 -125757554 + AT_rich Low_complexity Low_complexity 1 55 0 3 789 528 322 61 47 chr5 26780010 26780287 -125756972 - B4A SINE B4 -7 285 5 3 789 1143 88 7 0 chr5 26780339 26780486 -125756773 + B1_Mus1 SINE Alu 1 148 0 3 789 296 111 16 0 chr5 26780488 26780551 -125756708 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 3 789 2748 124 55 8 chr5 26782069 26782557 -125754702 - RLTR28 LTR ERVL 0 524 14 3 789 230 0 33 0 chr5 26783452 26783482 -125753777 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 789 571 253 98 35 chr5 26783884 26784138 -125753121 + MTD LTR MaLR 25 294 -125 3 789 497 218 102 24 chr5 26784177 26784304 -125752955 + MTD LTR MaLR 269 405 -14 3 789 180 0 0 0 chr5 26785446 26785466 -125751793 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 789 378 0 0 0 chr5 26785468 26785510 -125751749 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 789 330 26 0 0 chr5 26785510 26785548 -125751711 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 789 2162 154 31 11 chr5 26785721 26786076 -125751183 + Lx4A LINE L1 6697 7058 0 3 789 21 82 0 0 chr5 26786076 26786125 -125751134 + AT_rich Low_complexity Low_complexity 1 49 0 3 789 274 363 82 68 chr5 26786777 26787117 -125750142 + MLT1F1 LTR MaLR 4 348 -200 3 789 329 248 48 38 chr5 26787153 26787258 -125750001 + MLT1F1 LTR MaLR 460 565 -4 3 789 310 284 143 9 chr5 26787794 26788004 -125749255 - MLT1D LTR MaLR -20 485 248 3 789 27 0 0 0 chr5 26788229 26788256 -125749003 + AT_rich Low_complexity Low_complexity 1 27 0 3 789 319 175 16 16 chr5 26788298 26788362 -125748897 - B3A SINE B2 -127 71 8 3 789 21 0 0 0 chr5 26788377 26788398 -125748861 + AT_rich Low_complexity Low_complexity 1 21 0 3 789 496 268 37 128 chr5 26788398 26788434 -125748825 - B3A SINE B2 0 198 164 3 789 411 21 0 0 chr5 26788434 26788482 -125748777 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 789 496 268 37 128 chr5 26788482 26788621 -125748638 - B3A SINE B2 -35 163 42 3 789 1174 34 0 58 chr5 26788621 26788777 -125748482 - B1_Mus1 SINE Alu 0 148 2 3 789 496 268 37 128 chr5 26788777 26788818 -125748441 - B3A SINE B2 -157 41 1 3 789 316 221 183 0 chr5 26789275 26789379 -125747880 - MTEb LTR MaLR -17 362 240 3 789 2069 93 3 3 chr5 26790233 26790544 -125746715 + RLTR22_Mus LTR ERVK 1 311 -1497 3 789 1349 61 0 6 chr5 26790555 26790736 -125746523 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 789 954 62 8 0 chr5 26790740 26790870 -125746389 - B1_Mus1 SINE Alu 0 148 18 3 789 3602 62 0 6 chr5 26790870 26791376 -125745883 + RLTR22_Mus LTR ERVK 303 805 -1003 3 789 3708 70 2 2 chr5 26791502 26791974 -125745285 - L1_Mus1 LINE L1 0 6567 6096 3 789 8244 83 5 11 chr5 26791974 26793316 -125743943 + L1_Mus1 LINE L1 4745 6073 -494 3 789 444 279 83 60 chr5 26793451 26793668 -125743591 + RMER12 LTR ERVK 1101 1322 0 3 789 388 238 48 19 chr5 26794207 26794310 -125742949 + B3A SINE B2 91 196 -2 3 789 1254 48 0 0 chr5 26795280 26795427 -125741832 + B1_Mm SINE Alu 1 147 0 3 789 312 125 0 0 chr5 26795427 26795491 -125741768 + (A)n Simple_repeat Simple_repeat 1 64 0 3 789 497 309 69 0 chr5 26795669 26795902 -125741357 - L1M1 LINE L1 -487 5813 5565 3 789 388 173 0 29 chr5 26796010 26796147 -125741112 + (CTA)n Simple_repeat Simple_repeat 1 133 0 3 789 1162 252 103 35 chr5 26796209 26796615 -125740644 + Lx8 LINE L1 6804 7237 -236 3 789 494 70 14 0 chr5 26796632 26796703 -125740556 + (TC)n Simple_repeat Simple_repeat 2 73 0 3 789 1114 82 7 0 chr5 26796708 26796854 -125740405 - B1_Mus1 SINE Alu 0 148 2 3 789 400 197 102 62 chr5 26796856 26797059 -125740200 + Lx8 LINE L1 7223 7468 -5 3 789 26 30 0 0 chr5 26797059 26797092 -125740167 + AT_rich Low_complexity Low_complexity 1 33 0 3 789 513 309 13 3 chr5 26798104 26798338 -125738921 + MLT1A0 LTR MaLR 74 349 -16 3 789 372 94 0 0 chr5 26798859 26798912 -125738347 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 789 1382 329 84 11 chr5 26799152 26799431 -125737828 + Lx8 LINE L1 6338 6628 -845 3 789 877 272 165 3 chr5 26799431 26799752 -125737507 - ORR1D1 LTR MaLR -1 373 1 3 789 1382 316 157 10 chr5 26799752 26800335 -125736924 + Lx8 LINE L1 6629 7306 -167 3 789 240 35 0 0 chr5 26800559 26800588 -125736671 + (TGGGGG)n Simple_repeat Simple_repeat 5 33 0 3 789 427 244 91 62 chr5 26800591 26800801 -125736458 - RMER21A LTR ERV1 -346 601 386 3 789 285 190 47 23 chr5 26800951 26801037 -125736222 + Lx8 LINE L1 7386 7473 0 3 789 1018 245 56 52 chr5 26801119 26801595 -125735664 + BGLII_B LTR ERVK 1 481 -211 3 789 1437 120 73 12 chr5 26802672 26802905 -125734354 - ORR1B1 LTR MaLR -4 390 143 3 789 3819 125 34 64 chr5 26802905 26803665 -125733594 + RLTR13D6 LTR ERVK 1 789 -234 3 789 1158 69 7 0 chr5 26803665 26803809 -125733450 - B1_Mus1 SINE Alu -2 146 2 3 789 1967 237 127 121 chr5 26803809 26804065 -125733194 + RLTR13D6 LTR ERVK 790 1022 -1 3 789 682 157 8 16 chr5 26804065 26804188 -125733071 - ORR1B1 LTR MaLR -245 122 1 3 789 1763 112 25 50 chr5 26804965 26805285 -125731974 + ORR1A2 LTR MaLR 1 312 -15 3 789 26 30 0 0 chr5 26805356 26805389 -125731870 + AT_rich Low_complexity Low_complexity 1 33 0 3 789 333 0 0 0 chr5 26805518 26805555 -125731704 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 789 234 0 0 0 chr5 26805555 26805580 -125731679 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 789 508 314 6 11 chr5 26805626 26805803 -125731456 - Lx9 LINE L1 -289 7355 7180 3 789 832 309 102 47 chr5 26805810 26806322 -125730937 - Lx9 LINE L1 -685 6959 6420 3 789 1263 191 191 112 chr5 26807568 26807986 -125729273 - RMER19B LTR ERVK -451 451 1 3 789 735 182 0 0 chr5 26816167 26816310 -125720949 + URR1B DNA MER1_type 83 225 0 3 789 786 239 84 44 chr5 26816341 26816616 -125720643 - RLTR20B3 LTR ERVK -271 306 21 3 789 262 342 68 65 chr5 26818186 26818511 -125718748 + RLTR17 LTR ERVK 126 451 -241 4 789 260 287 81 8 chr5 26821438 26821561 -125715698 + L1_Rod LINE L1 5539 5670 -177 4 789 360 0 0 0 chr5 26822680 26822720 -125714539 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 789 189 331 15 68 chr5 26822729 26822862 -125714397 + MIR3 SINE MIR 1 126 -82 4 789 691 285 186 0 chr5 26823919 26824161 -125713098 - B4A SINE B4 -5 287 1 4 789 185 154 0 25 chr5 26824539 26824579 -125712680 + GA-rich Low_complexity Low_complexity 2 40 0 4 789 256 77 0 0 chr5 26825152 26825191 -125712068 + B1_Mus2 SINE Alu 89 127 -20 4 789 3294 94 86 2 chr5 26825224 26825714 -125711545 + Lx LINE L1 6121 6651 -3 4 789 2454 150 25 11 chr5 26826242 26826343 -125710916 - RLTR20A2 LTR ERVK 0 578 480 4 789 396 0 0 0 chr5 26826343 26826387 -125710872 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 789 2454 150 25 11 chr5 26826387 26826722 -125710537 - RLTR20A2 LTR ERVK -99 479 136 4 789 2821 33 0 48 chr5 26826825 26827179 -125710080 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 789 9062 27 2 5 chr5 26827179 26828211 -125709048 - IAPEz-int LTR ERVK 0 6481 5453 4 789 35194 22 24 10 chr5 26828209 26832247 -125705012 - IAPEz-int LTR ERVK -2378 4103 8 4 789 2821 33 0 48 chr5 26832247 26832601 -125704658 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 789 221 0 35 0 chr5 26832681 26832710 -125704549 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 789 34 0 0 0 chr5 26833162 26833196 -125704063 + AT_rich Low_complexity Low_complexity 1 34 0 4 789 184 0 0 88 chr5 26833201 26833235 -125704024 + (TAAAAA)n Simple_repeat Simple_repeat 1 31 0 4 789 491 90 0 13 chr5 26833254 26833333 -125703926 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 789 301 333 56 0 chr5 26833370 26833461 -125703798 - B3A SINE B2 -80 118 22 4 789 4520 127 107 69 chr5 26833461 26834434 -125702825 + RLTR13D2 LTR ERVK 1 1010 -13 4 789 201 317 202 50 chr5 26835154 26835396 -125701863 - L2 LINE L2 -2814 605 327 4 789 219 45 0 83 chr5 26835749 26835797 -125701462 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 4 789 345 319 4 141 chr5 26836249 26836526 -125700733 - HAL1 LINE L1 -2172 335 97 4 789 288 312 31 43 chr5 26836647 26836808 -125700451 + MIR3 SINE MIR 41 199 -9 4 789 185 185 0 36 chr5 26837133 26837189 -125700070 + GA-rich Low_complexity Low_complexity 1 54 0 4 789 807 259 122 59 chr5 26837893 26838230 -125699029 + ORR1E LTR MaLR 2 359 0 4 789 696 141 0 0 chr5 26838753 26838888 -125698371 + (CA)n Simple_repeat Simple_repeat 1 135 0 4 789 360 0 0 0 chr5 26838888 26838928 -125698331 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 789 273 177 21 54 chr5 26840114 26840356 -125696903 + (CCCTG)n Simple_repeat Simple_repeat 1 233 0 4 789 1062 217 80 58 chr5 26840750 26841112 -125696147 - ORR1C1 LTR MaLR 0 378 9 4 789 297 0 0 0 chr5 26841167 26841200 -125696059 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 789 504 161 0 0 chr5 26841849 26841973 -125695286 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 4 789 553 224 0 0 chr5 26841973 26842080 -125695179 - B1_Mur1 SINE Alu -1 148 42 4 789 227 267 28 56 chr5 26841999 26842106 -125695153 - MT2B LTR ERVL -323 278 175 4 789 246 274 12 0 chr5 26842222 26842306 -125694953 + CR1_Mam LINE CR1 2012 2096 -108 4 789 315 71 0 0 chr5 26842557 26842599 -125694660 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 789 31883 90 5 3 chr5 26842679 26845049 -125692210 - L1_Mus1 LINE L1 0 6567 4196 4 789 378 0 0 0 chr5 26845049 26845091 -125692168 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 789 31883 104 6 6 chr5 26845091 26848033 -125689226 - L1_Mus1 LINE L1 -1688 4195 1251 4 789 194 0 39 0 chr5 26848033 26848059 -125689200 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 789 31883 168 48 77 chr5 26848059 26848930 -125688329 - L1_Mus1 LINE L1 -5407 1250 409 4 789 969 286 11 73 chr5 26849085 26849437 -125687822 - ORR1E LTR MaLR -2 357 26 4 789 1291 173 23 5 chr5 26849437 26849658 -125687601 + URR1B DNA MER1_type 1 225 0 4 789 793 291 43 47 chr5 26849672 26849950 -125687309 - RMER15 LTR ERVL -3 572 296 4 789 480 81 0 0 chr5 26849989 26850063 -125687196 + (TC)n Simple_repeat Simple_repeat 2 75 0 4 789 231 212 15 29 chr5 26850401 26850469 -125686790 + MLT1A1 LTR MaLR 304 370 -38 4 789 405 0 0 0 chr5 26850475 26850520 -125686739 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 789 565 262 93 68 chr5 26850575 26850812 -125686447 + B4A SINE B4 10 252 -40 4 789 377 290 19 9 chr5 26851484 26851592 -125685667 + MTEa LTR MaLR 8 116 -263 4 789 203 188 21 0 chr5 26853422 26853470 -125683789 + CT-rich Low_complexity Low_complexity 2 50 0 4 789 1262 244 64 19 chr5 26853549 26853720 -125683539 + MTE2a LTR MaLR 5 179 -200 4 789 192 40 0 0 chr5 26853720 26853745 -125683514 + (AGCTG)n Simple_repeat Simple_repeat 3 27 0 4 789 1262 244 64 19 chr5 26853745 26853932 -125683327 + MTE2a LTR MaLR 180 378 -1 4 789 210 229 0 40 chr5 26853932 26853970 -125683289 - ID4_ SINE ID -28 55 20 4 789 366 23 0 0 chr5 26855290 26855333 -125681926 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 789 291 182 0 0 chr5 26855737 26855792 -125681467 - ORR1E LTR MaLR -233 126 72 4 789 187 189 19 19 chr5 26855797 26855851 -125681408 + GA-rich Low_complexity Low_complexity 5 58 0 4 789 411 73 0 0 chr5 26855877 26855932 -125681327 + (CAA)n Simple_repeat Simple_repeat 2 56 0 4 789 556 122 0 0 chr5 26856880 26856970 -125680289 - URR1B DNA MER1_type 0 225 136 4 789 6630 143 23 2 chr5 26856970 26857178 -125680081 + Lx5 LINE L1 4414 4623 -1254 4 789 603 78 0 0 chr5 26857178 26857268 -125679991 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 4 789 6630 162 46 2 chr5 26857268 26858660 -125678599 + Lx5 LINE L1 4624 6167 -833 4 789 2426 187 125 101 chr5 26858662 26859172 -125678087 - RLTR25B LTR ERVK 0 1028 450 4 789 297 0 0 0 chr5 26859172 26859205 -125678054 + (CAA)n Simple_repeat Simple_repeat 2 34 0 4 789 2426 187 125 101 chr5 26859205 26859420 -125677839 - RLTR25B LTR ERVK -579 449 285 4 789 230 290 160 30 chr5 26859658 26859889 -125677370 + BLACKJACK DNA AcHobo 2138 2398 -546 4 789 554 260 155 31 chr5 26860422 26860680 -125676579 + B4 SINE B4 3 292 0 4 789 221 0 0 33 chr5 26860683 26860713 -125676546 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 4 789 6069 70 4 3 chr5 26862550 26863320 -125673939 - L1Md_F2 LINE L1 -1 6581 5811 4 789 335 307 236 25 chr5 26863336 26863574 -125673685 - MLT1E3 LTR MaLR -52 572 280 4 789 1826 162 112 136 chr5 26863574 26864031 -125673228 + RLTR41 LTR ERV1 1 446 0 4 789 335 326 167 25 chr5 26864031 26864279 -125672980 - MLT1E3 LTR MaLR -345 279 1 4 789 270 0 0 0 chr5 26864517 26864547 -125672712 + (A)n Simple_repeat Simple_repeat 1 30 0 4 789 2878 86 139 2 chr5 26865440 26865908 -125671351 - RLTR47_MM LTR ERV1 0 532 1 4 789 342 242 82 22 chr5 26866889 26867024 -125670235 - Lx5 LINE L1 0 7050 6908 4 789 3211 171 78 9 chr5 26867033 26867671 -125669588 + RLTR17 LTR ERVK 9 690 -2 4 789 459 78 0 0 chr5 26867672 26867736 -125669523 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 789 1771 204 11 34 chr5 26867736 26868086 -125669173 - Lx5 LINE L1 -148 6902 6561 4 789 198 103 0 0 chr5 26868173 26868202 -125669057 + (TCTCC)n Simple_repeat Simple_repeat 4 32 0 4 789 246 361 68 54 chr5 26868593 26868673 -125668586 - Lx9 LINE L1 -53 7420 7336 4 789 387 0 0 0 chr5 26868673 26868716 -125668543 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 789 344 361 68 54 chr5 26868716 26869005 -125668254 - Lx9 LINE L1 -188 7456 7047 4 789 676 178 95 26 chr5 26869180 26869370 -125667889 - L1_Rod LINE L1 -476 5371 5169 4 98 3770 257 106 36 chr5 26869428 26871179 -125666080 - Lx9 LINE L1 -1482 6162 4249 4 790 598 285 15 16 chr5 26871182 26871396 -125665863 + ORR1E LTR MaLR 85 297 -73 4 790 352 299 47 66 chr5 26871435 26871646 -125665613 - L1M2 LINE L1 -1924 4219 4013 4 790 1273 163 19 35 chr5 26871653 26871914 -125665345 + ORR1C1 LTR MaLR 114 370 -8 4 790 794 286 0 20 chr5 26871922 26871954 -125665305 - B3 SINE B2 -20 196 168 4 790 348 64 0 0 chr5 26871954 26872001 -125665258 + (TATG)n Simple_repeat Simple_repeat 4 50 0 4 790 794 286 0 20 chr5 26872001 26872168 -125665091 - B3 SINE B2 -49 167 1 4 790 268 320 166 18 chr5 26872199 26872674 -125664585 + L1M5 LINE L1 5292 5831 -333 4 790 1796 176 65 92 chr5 26872767 26873104 -125664155 - MTC LTR MaLR 0 421 94 4 790 3047 80 7 5 chr5 26873104 26873507 -125663752 - L1Md_F2 LINE L1 -2 6580 6177 4 790 1796 176 65 92 chr5 26873507 26873602 -125663657 - MTC LTR MaLR -328 93 1 4 790 696 160 135 6 chr5 26874438 26874608 -125662651 - MTD LTR MaLR 0 419 228 4 790 391 361 38 0 chr5 26875259 26875442 -125661817 - MTD LTR MaLR -206 213 24 4 790 257 207 12 0 chr5 26875638 26875720 -125661539 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 4 790 291 240 139 10 chr5 26876335 26876436 -125660823 - MLT1B LTR MaLR -82 308 195 4 790 1180 176 35 137 chr5 26876716 26877169 -125660090 + RMER17C LTR ERVK 4 410 0 4 790 1506 163 169 0 chr5 26878627 26878971 -125658288 - RMER17C LTR ERVK -8 402 1 4 790 21 36 0 0 chr5 26880773 26880801 -125656458 + AT_rich Low_complexity Low_complexity 1 28 0 4 790 1213 220 60 83 chr5 26880919 26881015 -125656244 - Lx9 LINE L1 0 7644 7549 4 790 4119 189 38 64 chr5 26881015 26881940 -125655319 + RMER13B LTR ERVK 5 905 -3 4 790 1213 220 60 83 chr5 26881940 26882274 -125654985 - Lx9 LINE L1 -96 7548 7224 4 790 34804 101 13 13 chr5 26882291 26888664 -125648595 - L1Md_F2 LINE L1 -1 6581 210 4 790 1002 192 37 65 chr5 26888657 26888902 -125648357 - Lx9 LINE L1 -426 7218 6981 4 790 1081 262 129 20 chr5 26889820 26890170 -125647089 + MTD LTR MaLR 18 405 -14 4 790 414 0 0 0 chr5 26890248 26890294 -125646965 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 790 845 348 19 4 chr5 26891060 26891331 -125645928 + B4 SINE B4 18 292 0 4 790 467 33 16 0 chr5 26891701 26891762 -125645497 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 790 4308 229 53 10 chr5 26891762 26892675 -125644584 - Lx5 LINE L1 -17 7033 6082 4 790 8326 158 13 25 chr5 26892677 26893777 -125643482 + Lx5 LINE L1 4402 5480 -397 4 790 2465 92 6 0 chr5 26893777 26894102 -125643157 - ORR1A2 LTR MaLR 0 327 1 4 790 8326 140 53 5 chr5 26894102 26894663 -125642596 + Lx5 LINE L1 5481 6076 -974 4 790 211 212 76 3 chr5 26895114 26895178 -125642081 + MIRb SINE MIR 189 255 -7 4 790 489 185 33 0 chr5 26895615 26895707 -125641552 + B4 SINE B4 17 111 -181 4 790 519 321 47 12 chr5 26895807 26895977 -125641282 + B4 SINE B4 117 292 0 4 790 225 65 0 0 chr5 26896000 26896031 -125641228 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 790 511 160 22 28 chr5 26896040 26896220 -125641039 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 5 790 243 248 152 53 chr5 26896710 26896842 -125640417 - MLT2B4 LTR ERVL -6 550 406 5 790 631 289 91 71 chr5 26896851 26897335 -125639924 + RLTR12B LTR ERVK 15 509 -59 5 790 641 276 49 57 chr5 26897409 26897655 -125639604 + RLTR20B3 LTR ERVK 21 264 -313 5 790 1023 119 121 24 chr5 26897652 26897858 -125639401 + MTC LTR MaLR 196 421 0 5 790 3518 23 5 0 chr5 26897904 26898298 -125638961 - MTA_Mm LTR MaLR 0 396 1 5 790 22 0 0 0 chr5 26898584 26898606 -125638653 + AT_rich Low_complexity Low_complexity 1 22 0 5 790 300 120 0 0 chr5 26898685 26898735 -125638524 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 790 662 292 127 39 chr5 26899816 26899931 -125637328 - Lx7 LINE L1 -2 7471 7334 5 790 387 0 0 0 chr5 26899931 26899974 -125637285 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 790 837 279 86 28 chr5 26899974 26900300 -125636959 - Lx7 LINE L1 -140 7333 6979 5 790 253 267 91 8 chr5 26900745 26900866 -125636393 - Lx7 LINE L1 -1563 5910 5780 5 790 23 0 0 0 chr5 26900882 26900905 -125636354 + AT_rich Low_complexity Low_complexity 1 23 0 5 790 393 311 88 95 chr5 26900905 26901189 -125636070 - Lx8 LINE L1 -7 7466 7185 5 790 412 283 37 19 chr5 26901191 26901353 -125635906 + L1_Rod LINE L1 483 647 -6525 5 790 552 267 144 6 chr5 26901578 26901759 -125635500 + B3 SINE B2 1 206 -10 5 790 988 248 169 3 chr5 26903365 26903697 -125633562 + MTD LTR MaLR 18 404 -15 5 790 423 56 0 0 chr5 26904864 26904918 -125632341 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 5 790 1177 75 0 0 chr5 26904926 26905073 -125632186 - B1_Mus2 SINE Alu 0 147 1 5 790 384 194 252 0 chr5 26905082 26905185 -125632074 - MTD LTR MaLR -14 405 277 5 790 414 0 0 0 chr5 26905290 26905336 -125631923 + (CATA)n Simple_repeat Simple_repeat 2 47 0 5 790 422 206 30 20 chr5 26905564 26905663 -125631596 + RMER15 LTR ERVL 27 126 -449 5 790 735 245 131 89 chr5 26905667 26905981 -125631278 - MTE2a LTR MaLR -48 331 5 5 790 277 179 24 0 chr5 26906177 26906261 -125630998 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 790 2655 173 148 229 chr5 26906276 26907264 -125629995 + RMER13B LTR ERVK 1 908 0 5 790 30 27 0 0 chr5 26907271 26907308 -125629951 + AT_rich Low_complexity Low_complexity 1 37 0 5 790 456 286 105 67 chr5 26907470 26907886 -125629373 + L1MA10 LINE L1 5892 6320 -14 5 790 352 228 40 0 chr5 26908565 26908666 -125628593 + MTD LTR MaLR 1 105 -314 5 790 882 71 24 0 chr5 26908670 26908797 -125628462 - ORR1A3 LTR MaLR -8 318 189 5 790 2114 199 23 105 chr5 26908801 26909119 -125628140 + RLTR20B3 LTR ERVK 21 305 -272 5 790 1218 68 0 0 chr5 26909119 26909265 -125627994 + B1_Mus2 SINE Alu 1 146 -1 5 790 2114 199 23 105 chr5 26909265 26909553 -125627706 + RLTR20B3 LTR ERVK 306 577 0 5 790 1159 112 0 93 chr5 26909553 26909767 -125627492 - ORR1A4 LTR MaLR -135 194 1 5 790 1055 250 100 17 chr5 26909767 26910003 -125627256 + MTD LTR MaLR 101 347 -72 5 790 432 0 0 0 chr5 26910003 26910051 -125627208 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 790 315 0 0 0 chr5 26910051 26910085 -125627174 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 790 1055 250 100 17 chr5 26910085 26910134 -125627125 + MTD LTR MaLR 348 410 -9 5 790 1001 260 12 0 chr5 26910680 26910915 -125626344 + MTD LTR MaLR 59 296 -123 5 790 432 252 87 22 chr5 26910915 26911053 -125626206 + MTD LTR MaLR 1 147 -272 5 790 575 237 102 45 chr5 26911185 26911362 -125625897 - B3A SINE B2 -29 187 1 5 790 219 95 15 60 chr5 26911368 26911435 -125625824 + (TTTG)n Simple_repeat Simple_repeat 4 67 0 5 790 237 297 112 9 chr5 26913698 26913805 -125623454 + MIRb SINE MIR 72 195 -73 5 790 198 0 0 0 chr5 26913924 26913946 -125623313 + (T)n Simple_repeat Simple_repeat 1 22 0 5 790 241 118 75 38 chr5 26913972 26914025 -125623234 - PB1D9 SINE Alu -1 119 65 5 790 498 239 8 42 chr5 26913981 26914099 -125623160 - ID_B1 SINE B4 -8 216 103 5 790 887 107 87 12 chr5 26915589 26915750 -125621509 - B2_Mm2 SINE B2 -21 174 2 5 790 363 209 174 134 chr5 26916183 26916332 -125620927 + RSINE1 SINE B4 11 165 0 5 790 25 31 0 0 chr5 26916355 26916387 -125620872 + AT_rich Low_complexity Low_complexity 1 32 0 5 790 235 301 117 29 chr5 26917036 26917207 -125620052 - LTR68 LTR ERV1 -145 595 410 5 790 186 152 16 33 chr5 26918022 26918083 -125619176 + CT-rich Low_complexity Low_complexity 2 61 0 5 790 980 250 103 4 chr5 26918147 26918400 -125618859 - B4 SINE B4 -12 280 3 5 790 1158 236 74 6 chr5 26918639 26918950 -125618309 - RLTR17 LTR ERVK -73 619 288 5 790 24 0 0 0 chr5 26919452 26919476 -125617783 + AT_rich Low_complexity Low_complexity 1 24 0 5 790 1255 228 106 40 chr5 26920002 26920400 -125616859 - BGLII_B LTR ERVK -17 424 1 5 790 1081 178 14 34 chr5 26920614 26920761 -125616498 - B3 SINE B2 -11 205 63 5 790 4012 110 120 38 chr5 26920761 26921442 -125615817 + RMER19A LTR ERVK 1 737 0 5 790 1081 178 14 34 chr5 26921442 26921503 -125615756 - B3 SINE B2 -154 62 1 5 790 1091 222 111 60 chr5 26921688 26922038 -125615221 - MTE2a LTR MaLR -9 370 3 5 790 371 283 20 0 chr5 26922153 26922252 -125615007 + B3 SINE B2 111 211 -5 5 790 1206 249 70 39 chr5 26922428 26922787 -125614472 + ORR1D2 LTR MaLR 1 370 0 5 790 381 288 0 23 chr5 26922816 26922944 -125614315 - RCHARR1 DNA MER1_type -505 469 345 5 790 1010 152 16 61 chr5 26922959 26923205 -125614054 - RMER17C LTR ERVK -35 375 141 5 790 207 228 35 0 chr5 26923211 26923268 -125613991 + CT-rich Low_complexity Low_complexity 2 60 0 5 790 481 294 27 0 chr5 26923337 26923483 -125613776 - RCHARR1 DNA MER1_type -601 373 224 5 790 331 203 13 13 chr5 26923758 26923833 -125613426 + HAL1-3A_ME LINE L1 1975 2049 -809 5 790 1798 203 20 81 chr5 26923871 26924315 -125612944 - MTC LTR MaLR -2 419 3 5 790 769 298 72 4 chr5 26924923 26925172 -125612087 + B4A SINE B4 8 273 -19 5 790 21 0 0 0 chr5 26925705 26925726 -125611533 + AT_rich Low_complexity Low_complexity 1 21 0 5 790 226 255 125 21 chr5 26925766 26925862 -125611397 - Lx8 LINE L1 -10 7463 7358 5 790 344 349 0 0 chr5 26926147 26926273 -125610986 + Lx7 LINE L1 6397 6522 -1174 5 790 26 93 0 0 chr5 26927365 26927440 -125609819 + AT_rich Low_complexity Low_complexity 1 75 0 5 790 277 167 138 43 chr5 26927440 26927534 -125609725 - Lx9 LINE L1 -15 7629 7527 5 790 282 29 0 0 chr5 26927548 26927583 -125609676 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 790 278 114 45 0 chr5 26927586 26927630 -125609629 - Lx9 LINE L1 -189 7455 7410 5 790 1535 245 36 28 chr5 26927650 26928037 -125609222 + Lx8 LINE L1 6288 6677 -796 5 790 440 307 40 13 chr5 26929076 26929228 -125608031 - RMER5 LTR ERV1 -221 313 158 5 790 3337 330 65 55 chr5 26930668 26931909 -125605350 - RodERV21-int LTR ERV1 -105 4886 3631 5 790 2786 33 45 0 chr5 26931909 26932240 -125605019 - ORR1A1 LTR MaLR 0 346 1 5 790 3337 330 65 55 chr5 26932240 26933147 -125604112 - RodERV21-int LTR ERV1 -1361 3630 2717 5 790 296 203 13 35 chr5 26933476 26933588 -125603671 - MER52-int LTR ERV1 -2657 4949 4890 5 790 256 189 19 19 chr5 26934043 26934097 -125603162 - MER52-int LTR ERV1 -1987 5104 5051 5 790 180 0 0 0 chr5 26934552 26934572 -125602687 + (T)n Simple_repeat Simple_repeat 1 20 0 5 790 439 336 34 52 chr5 26935062 26935507 -125601752 - MER52-int LTR ERV1 -3017 4074 3638 5 790 208 139 0 0 chr5 26935578 26935614 -125601645 + (T)n Simple_repeat Simple_repeat 1 36 0 5 790 471 113 0 0 chr5 26936402 26936473 -125600786 + (TA)n Simple_repeat Simple_repeat 2 72 0 5 790 206 62 31 0 chr5 26936474 26936506 -125600753 + (GA)n Simple_repeat Simple_repeat 1 33 0 5 790 216 0 0 0 chr5 26936633 26936657 -125600602 + (T)n Simple_repeat Simple_repeat 1 24 0 5 790 616 234 0 0 chr5 26936674 26936802 -125600457 - B3A SINE B2 -68 130 3 5 790 23 0 0 0 chr5 26937263 26937286 -125599973 + AT_rich Low_complexity Low_complexity 1 23 0 5 790 775 234 105 11 chr5 26938134 26938324 -125598935 - B3 SINE B2 0 216 9 5 790 31 0 0 0 chr5 26938647 26938678 -125598581 + AT_rich Low_complexity Low_complexity 1 31 0 5 790 439 202 9 9 chr5 26938715 26938830 -125598429 + (TA)n Simple_repeat Simple_repeat 2 116 0 5 790 641 289 170 14 chr5 26939135 26939606 -125597653 - L1M3 LINE L1 -3130 3010 2466 5 790 543 43 0 0 chr5 26939606 26939676 -125597583 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 790 641 289 170 14 chr5 26939676 26939779 -125597480 - L1M3 LINE L1 -3675 2465 2347 5 790 762 250 5 58 chr5 26940955 26941163 -125596096 + B3A SINE B2 2 198 0 5 790 256 234 157 31 chr5 26941165 26941324 -125595935 + L1M3 LINE L1 4295 4473 -1667 5 790 1470 294 60 23 chr5 26941324 26942158 -125595101 + L1M3 LINE L1 4591 5475 -708 5 790 375 295 57 14 chr5 26942171 26942312 -125594947 + MTD LTR MaLR 15 161 -258 5 790 664 333 99 24 chr5 26943050 26943425 -125593834 - MTD LTR MaLR -14 405 3 5 790 246 200 0 28 chr5 26944112 26944184 -125593075 + (TCTCTG)n Simple_repeat Simple_repeat 2 71 0 5 790 315 287 0 0 chr5 26944341 26944429 -125592830 + MIRm SINE MIR 82 163 -45 5 790 239 281 0 0 chr5 26944829 26944893 -125592366 - RMER15 LTR ERVL -217 358 295 5 790 324 333 21 0 chr5 26945176 26945272 -125591987 + PB1D10 SINE Alu 11 108 -9 5 790 360 242 0 0 chr5 26946168 26946263 -125590996 + CT-rich Low_complexity Low_complexity 2 96 0 5 790 486 276 23 45 chr5 26946290 26946423 -125590836 - B4 SINE B4 0 292 163 5 790 847 276 103 11 chr5 26946547 26946904 -125590355 + MTD LTR MaLR 1 419 0 5 790 1277 234 129 23 chr5 26946904 26947425 -125589834 + MTD-int LTR MaLR 1 576 -682 5 790 447 132 176 0 chr5 26947414 26947505 -125589754 + MTD LTR MaLR 177 283 -136 5 790 180 174 0 132 chr5 26947528 26947581 -125589678 - L2 LINE L2 -496 2923 2878 5 790 462 134 10 10 chr5 26948000 26948098 -125589161 - Lx LINE L1 -2 6652 6555 5 790 2733 108 19 7 chr5 26948098 26948664 -125588595 - L1_Mus4 LINE L1 -639 5997 5425 5 790 1470 75 12 102 chr5 26948684 26948938 -125588321 - RLTR9B2 LTR ERVK -189 231 1 5 790 9110 156 29 3 chr5 26948938 26950426 -125586833 - L1_Mur2 LINE L1 -872 5005 3472 5 790 324 0 0 0 chr5 26950426 26950462 -125586797 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6 790 9110 156 29 3 chr5 26950462 26950707 -125586552 - L1_Mur2 LINE L1 -2406 3471 3227 5 790 1230 96 0 0 chr5 26950700 26950888 -125586371 - MusHAL1 LINE L1 -1401 1311 1124 6 790 372 257 128 73 chr5 26950891 26951015 -125586244 - RMER12B LTR ERVK -149 1423 1256 6 790 351 78 0 0 chr5 26951015 26951066 -125586193 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 790 372 216 160 74 chr5 26951066 26951160 -125586099 - RMER12B LTR ERVK -149 1255 1164 6 790 513 84 0 0 chr5 26951160 26951231 -125586028 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 790 372 216 160 74 chr5 26951231 26951265 -125585994 - RMER12B LTR ERVK -241 1163 1124 6 790 388 318 44 31 chr5 26951445 26951604 -125585655 - MER5A DNA MER1_type -14 175 15 6 790 1008 182 13 21 chr5 26951700 26951901 -125585358 - RLTR20B1 LTR ERVK -384 194 1 6 790 4213 237 41 31 chr5 26951903 26953138 -125584121 - MYSERV6-int LTR ERVK -7562 1397 150 6 790 220 157 11 108 chr5 26953557 26953650 -125583609 + G-rich Low_complexity Low_complexity 1 84 0 6 790 728 278 128 26 chr5 26954254 26954708 -125582551 - RLTR12B LTR ERVK -28 500 1 6 790 1299 270 69 61 chr5 26954785 26955306 -125581953 - MT2A LTR ERVL -8 525 1 6 790 10131 179 43 22 chr5 26955306 26959327 -125577932 - MERVL_2A-int LTR ERVL 0 5761 1609 6 790 1777 173 28 6 chr5 26959418 26959779 -125577480 - MERVL_2A-int LTR ERVL -5390 371 3 6 790 250 143 0 45 chr5 26959779 26959817 -125577442 - Ricksha_c DNA MuDR -1142 906 871 6 790 22 56 0 0 chr5 26961731 26961767 -125575492 + AT_rich Low_complexity Low_complexity 1 36 0 6 790 256 303 26 0 chr5 26962425 26962501 -125574758 - ID2 SINE ID -1 82 5 6 790 25 51 0 0 chr5 26962507 26962546 -125574713 + AT_rich Low_complexity Low_complexity 1 39 0 6 790 1869 215 22 22 chr5 26962599 26963089 -125574170 - L1_Mur3 LINE L1 -1912 3968 3479 6 790 4145 197 81 17 chr5 26963099 26964047 -125573212 - Lx5 LINE L1 -3 7047 6039 6 790 7003 108 21 1 chr5 26964048 26965482 -125571777 - L1_Mus3 LINE L1 -18 6620 5142 6 790 299 27 0 0 chr5 26965480 26965517 -125571742 - L1_Mm LINE L1 -1128 4755 4719 6 790 3948 75 23 34 chr5 26965519 26966074 -125571185 + L1_Mus2 LINE L1 6018 6566 0 6 790 10361 168 71 8 chr5 26966111 26966940 -125570319 + L1_Mur2 LINE L1 3028 3857 -2020 6 790 261 0 0 0 chr5 26966940 26966969 -125570290 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 790 10361 168 71 8 chr5 26966969 26967723 -125569536 + L1_Mur2 LINE L1 3858 4726 -1151 6 790 576 0 0 0 chr5 26967723 26967787 -125569472 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 6 790 10361 168 71 8 chr5 26967787 26968434 -125568825 + L1_Mur2 LINE L1 4727 5399 -478 6 790 617 310 4 4 chr5 26968692 26968951 -125568308 - RMER16-int LTR ERVK -422 4984 4726 6 790 182 244 22 0 chr5 26968951 26968996 -125568263 + L3 LINE CR1 76 121 -4368 6 790 1602 268 27 39 chr5 26969000 26969622 -125567637 - RMER16-int LTR ERVK -812 4594 3980 6 790 942 48 40 0 chr5 26969877 26970003 -125567256 + L1_Mus1 LINE L1 6430 6560 -7 6 790 233 143 0 51 chr5 26970006 26970065 -125567194 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 6 790 2147 175 10 53 chr5 26970096 26970489 -125566770 - ORR1C1 LTR MaLR 0 378 3 6 790 763 208 75 27 chr5 26970489 26970669 -125566590 + B3 SINE B2 28 216 0 6 790 276 309 96 37 chr5 26971102 26971290 -125565969 - MamRep434 DNA TcMar -184 242 44 6 790 333 260 156 11 chr5 26971397 26971576 -125565683 + Lx8 LINE L1 7185 7389 -84 6 790 2046 208 17 7 chr5 26972851 26973268 -125563991 - MTC LTR MaLR 0 421 1 6 790 24 67 0 0 chr5 26973482 26973527 -125563732 + AT_rich Low_complexity Low_complexity 1 45 0 6 790 656 239 77 6 chr5 26973677 26973845 -125563414 + B3A SINE B2 3 182 -16 6 790 3678 35 0 0 chr5 26975463 26975898 -125561361 + L1Md_T LINE L1 6148 6582 0 6 790 212 317 0 48 chr5 26976654 26976717 -125560542 + B4A SINE B4 1 60 -232 6 790 608 269 22 0 chr5 26976743 26976877 -125560382 + B1_Mur1 SINE Alu 2 138 -11 6 790 212 0 36 0 chr5 26976878 26976906 -125560353 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 790 3585 72 19 0 chr5 26976951 26977505 -125559754 - L1_Mus1 LINE L1 -659 5923 5345 6 790 5003 90 3 11 chr5 26977505 26978211 -125559048 + L1_Mus1 LINE L1 5868 6567 0 6 790 267 157 0 0 chr5 26978320 26978371 -125558888 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 6 790 21 36 0 0 chr5 26978654 26978682 -125558577 + AT_rich Low_complexity Low_complexity 1 28 0 6 790 3473 54 20 2 chr5 26978689 26979135 -125558124 - L1_Mus2 LINE L1 0 6566 6113 6 790 221 0 0 33 chr5 26980028 26980058 -125557201 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 790 442 322 112 0 chr5 26980197 26980340 -125556919 - ID_B1 SINE B4 -52 172 14 6 790 369 0 0 0 chr5 26980363 26980404 -125556855 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 6 790 29144 107 13 2 chr5 26981073 26987060 -125550199 - L1_Mus1 LINE L1 -2 6565 510 6 790 365 320 0 0 chr5 26987517 26987617 -125549642 - B1F2 SINE Alu -49 100 1 6 790 292 342 0 88 chr5 26987617 26987639 -125549620 - ID_B1 SINE B4 -43 178 68 6 790 452 347 45 25 chr5 26987725 26987926 -125549333 + MTD LTR MaLR 1 205 -214 6 790 934 315 87 32 chr5 26987819 26988163 -125549096 + MT2A LTR ERVL 63 425 -108 6 790 27 29 0 0 chr5 26988230 26988264 -125548995 + AT_rich Low_complexity Low_complexity 1 34 0 6 790 414 0 0 0 chr5 26988300 26988346 -125548913 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 6 790 620 308 112 0 chr5 26988402 26988671 -125548588 + MTE2b LTR MaLR 75 359 0 6 790 559 261 114 0 chr5 26988673 26988857 -125548402 + MTE2b-int LTR MaLR 1 205 -1375 6 790 5951 133 35 15 chr5 26989274 26989753 -125547506 - Lx LINE L1 -3 6651 6172 6 790 4352 167 126 11 chr5 26989753 26990612 -125546647 + RMER17B LTR ERVK 1 958 0 6 790 5951 148 31 10 chr5 26990612 26991562 -125545697 - Lx LINE L1 -483 6171 5200 6 790 13509 115 31 27 chr5 26991552 26994669 -125542590 - L1VL2 LINE L1 -354 3261 117 6 790 23 0 0 0 chr5 26995106 26995129 -125542130 + AT_rich Low_complexity Low_complexity 1 23 0 6 790 226 372 112 61 chr5 26995177 26995472 -125541787 - MLT1I LTR MaLR -22 389 80 6 790 259 351 9 0 chr5 26996113 26996227 -125541032 + Kanga1d DNA Tc2 320 434 -175 6 790 681 92 0 0 chr5 26996308 26996406 -125540853 + (TTC)n Simple_repeat Simple_repeat 1 98 0 6 790 317 188 12 0 chr5 26996433 26996513 -125540746 + CT-rich Low_complexity Low_complexity 3 83 0 6 790 347 145 12 84 chr5 26996889 26996935 -125540324 - HAL1-3A_ME LINE L1 -806 2052 2012 6 790 516 84 0 0 chr5 26996935 26997018 -125540241 + (TCTCTG)n Simple_repeat Simple_repeat 6 88 0 6 790 347 145 12 84 chr5 26997018 26997054 -125540205 - HAL1-3A_ME LINE L1 -847 2011 1976 6 790 309 305 0 0 chr5 26998053 26998135 -125539124 - PB1 SINE Alu 0 127 46 6 790 278 178 0 0 chr5 26998675 26998720 -125538539 - MTEa LTR MaLR 0 379 335 6 790 309 82 0 0 chr5 26998787 26998836 -125538423 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 790 387 0 0 0 chr5 26998836 26998879 -125538380 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 790 288 241 12 71 chr5 26998886 26998971 -125538288 - RSINE1 SINE B4 -57 108 29 6 790 232 291 25 0 chr5 26999288 26999367 -125537892 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 790 420 20 0 0 chr5 26999452 26999501 -125537758 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 790 486 0 0 0 chr5 26999541 26999595 -125537664 + (AGTAG)n Simple_repeat Simple_repeat 4 57 0 6 790 795 281 50 16 chr5 27000000 27000242 -125537017 - MTE2b LTR MaLR -128 251 2 1 790 232 284 53 44 chr5 27000543 27000657 -125536602 - Charlie4z DNA MER1_type -6 161 47 2 791 357 232 130 26 chr5 27001608 27001808 -125535451 - L1MA4 LINE L1 -278 6019 5794 3 791 545 0 15 0 chr5 27002451 27002516 -125534743 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 791 189 0 0 0 chr5 27002869 27002890 -125534369 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 791 562 104 21 0 chr5 27002930 27003026 -125534233 + (TC)n Simple_repeat Simple_repeat 1 98 0 6 791 470 299 98 90 chr5 27003027 27003427 -125533832 + L1MEc LINE L1 208 610 -5932 7 791 8531 31 3 3 chr5 27003450 27005032 -125532227 - L1Md_F3 LINE L1 -14 6570 4991 8 791 339 297 66 63 chr5 27005186 27005473 -125531786 - L1M4 LINE L1 -5454 1088 801 9 791 3614 39 0 130 chr5 27005881 27006382 -125530877 - RLTR10C LTR ERVK 0 436 1 1 791 508 234 103 16 chr5 27006394 27006520 -125530739 - B3 SINE B2 -79 137 1 1 791 385 272 67 40 chr5 27006575 27006837 -125530422 + L1MB5 LINE L1 5877 6149 -35 1 791 969 278 144 41 chr5 27007201 27007999 -125529260 + L1MEc LINE L1 762 1641 -5084 7 791 416 256 34 0 chr5 27008793 27008910 -125528349 + MLT2B4 LTR ERVL 13 133 -423 1 791 272 301 10 173 chr5 27009204 27009401 -125527858 + MLT2B4 LTR ERVL 320 484 -72 1 791 522 0 0 0 chr5 27009563 27009621 -125527638 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 791 469 280 0 0 chr5 27009626 27009726 -125527533 - ID_B1 SINE B4 -16 208 109 1 791 855 258 64 104 chr5 27010001 27010442 -125526817 + MT2B LTR ERVL 1 523 -78 1 791 1237 284 34 11 chr5 27010599 27010948 -125526311 - ORR1E LTR MaLR -1 358 2 1 791 869 290 9 5 chr5 27011322 27011537 -125525722 + ID_B1 SINE B4 2 217 -7 1 791 594 221 0 17 chr5 27011547 27011722 -125525537 + GA-rich Low_complexity Low_complexity 3 174 0 1 791 773 270 22 22 chr5 27011786 27011968 -125525291 - B3A SINE B2 -16 182 1 2 791 500 230 84 6 chr5 27012584 27012745 -125524514 - MTD LTR MaLR 0 421 244 2 791 314 212 11 91 chr5 27012804 27012892 -125524367 - MTD LTR MaLR -326 93 13 2 791 406 279 201 27 chr5 27013042 27013079 -125524180 - B3 SINE B2 0 216 182 2 791 279 0 0 0 chr5 27013079 27013110 -125524149 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2 791 406 279 201 27 chr5 27013110 27013256 -125524003 - B3 SINE B2 -35 181 1 2 791 1158 72 7 0 chr5 27013287 27013425 -125523834 - B1_Mus1 SINE Alu -9 139 1 2 791 262 340 0 67 chr5 27013787 27013891 -125523368 + MIRb SINE MIR 63 159 -109 2 791 1193 156 163 28 chr5 27014251 27014502 -125522757 + RMER19A LTR ERVK 1 285 -452 2 791 242 291 22 65 chr5 27014505 27014597 -125522662 - MTE-int LTR MaLR -674 906 819 2 791 325 250 191 0 chr5 27014867 27014951 -125522308 + MTE-int LTR MaLR 951 1050 -530 2 791 354 364 76 69 chr5 27015104 27015393 -125521866 + MLT1G LTR MaLR 7 297 -294 2 791 656 267 150 0 chr5 27017599 27017779 -125519480 + B4A SINE B4 23 229 -63 3 791 674 257 12 12 chr5 27017793 27017966 -125519293 + B3A SINE B2 26 198 0 3 791 182 91 30 0 chr5 27018185 27018218 -125519041 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 791 859 230 30 35 chr5 27018894 27019092 -125518167 + B3A SINE B2 2 198 0 3 791 236 310 0 0 chr5 27019165 27019223 -125518036 + RSINE1 SINE B4 100 157 -8 3 791 426 310 33 5 chr5 27019562 27019773 -125517486 + L1MC4a LINE L1 6943 7159 -723 3 791 690 296 130 16 chr5 27019891 27020145 -125517114 + B4 SINE B4 2 284 -8 3 791 264 295 272 52 chr5 27020604 27020865 -125516394 - MLT1F LTR MaLR -15 533 216 3 791 2750 84 64 16 chr5 27021418 27021806 -125515453 - MTB_Mm LTR MaLR 0 407 1 3 791 5603 139 121 101 chr5 27021806 27023038 -125514221 - MTB_Mm-int LTR MaLR 0 1258 2 3 791 1624 138 6 29 chr5 27023038 27023333 -125513926 - MTB_Mm LTR MaLR -1 406 61 3 791 1321 208 18 57 chr5 27023327 27023608 -125513651 - RMER13B LTR ERVK -624 284 15 3 791 838 281 70 23 chr5 27023633 27023932 -125513327 + RMER13B LTR ERVK 580 892 -16 4 791 655 79 11 0 chr5 27023951 27024040 -125513219 - MTB_Mm LTR MaLR -317 90 1 4 791 519 159 0 0 chr5 27024692 27024805 -125512454 + GA-rich Low_complexity Low_complexity 1 113 0 4 791 219 69 0 0 chr5 27025452 27025481 -125511778 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 4 791 350 335 93 46 chr5 27025581 27025797 -125511462 - Charlie1a DNA MER1_type -307 1148 923 4 791 1270 259 120 11 chr5 27025886 27026261 -125510998 + MTD LTR MaLR 4 419 0 4 791 314 239 58 36 chr5 27026592 27026731 -125510528 + Charlie1b DNA MER1_type 231 372 -151 4 791 292 247 12 12 chr5 27027294 27027380 -125509879 - MER53 DNA hAT 0 193 108 4 791 281 241 0 12 chr5 27027311 27027391 -125509868 + MER53 DNA hAT 29 107 -86 4 791 225 0 0 0 chr5 27028120 27028145 -125509114 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 791 208 274 0 0 chr5 27028316 27028367 -125508892 - L2a LINE L2 -429 2997 2947 5 791 939 330 38 25 chr5 27028429 27028824 -125508435 + RCHARR1 DNA MER1_type 6 405 -569 5 791 743 329 115 31 chr5 27028824 27029347 -125507912 - Lx8 LINE L1 -4 7469 6903 5 791 1214 226 88 45 chr5 27029359 27029719 -125507540 + RCHARR1 DNA MER1_type 377 762 -212 5 791 888 221 35 45 chr5 27029719 27029918 -125507341 - B3A SINE B2 -1 197 1 5 791 1214 226 88 45 chr5 27029918 27029955 -125507304 + RCHARR1 DNA MER1_type 763 791 -183 5 791 4196 156 92 29 chr5 27030039 27030876 -125506383 - RLTR13D6 LTR ERVK -12 890 1 5 791 765 182 36 36 chr5 27032166 27032303 -125504956 + B1_Mus2 SINE Alu 1 137 -10 5 791 324 19 0 54 chr5 27032303 27032359 -125504900 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 5 791 195 204 0 0 chr5 27032474 27032518 -125504741 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 5 791 616 267 27 42 chr5 27032684 27032946 -125504313 + L1MA10 LINE L1 6029 6286 -48 5 791 756 270 35 0 chr5 27032968 27033142 -125504117 + B4A SINE B4 107 286 -6 5 791 522 229 6 11 chr5 27033148 27033329 -125503930 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 791 372 94 0 0 chr5 27033320 27033373 -125503886 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 791 1363 246 45 28 chr5 27033436 27033795 -125503464 + ORR1D2 LTR MaLR 6 370 0 6 791 739 242 30 112 chr5 27034889 27035122 -125502137 - B3 SINE B2 0 216 3 6 791 424 273 17 52 chr5 27035565 27035681 -125501578 - Lx LINE L1 -185 7288 7177 6 791 701 248 28 0 chr5 27036449 27036594 -125500665 + B1_Mur1 SINE Alu 1 149 0 6 791 868 264 79 96 chr5 27037175 27037510 -125499749 - MTE2a LTR MaLR 0 370 48 6 791 1331 255 20 60 chr5 27037526 27037873 -125499386 - MTEb LTR MaLR -43 336 4 6 791 863 201 5 41 chr5 27038133 27038351 -125498908 - Lx LINE L1 0 6654 6445 6 791 7100 89 24 14 chr5 27038346 27040019 -125497240 - MusHAL1 LINE L1 -1657 1696 5 6 791 317 284 120 47 chr5 27041220 27041412 -125495847 - ERVL-E-int LTR ERVL -3413 2254 2049 6 791 1004 51 22 0 chr5 27042057 27042194 -125495065 + (ATATG)n Simple_repeat Simple_repeat 2 141 0 7 791 421 302 31 0 chr5 27043069 27043198 -125494061 + ORR1E LTR MaLR 4 136 -223 7 791 469 291 67 53 chr5 27043284 27043509 -125493750 - Lx8 LINE L1 0 7473 7246 7 791 1036 264 147 12 chr5 27044344 27044663 -125492596 - ORR1D2 LTR MaLR 0 370 9 7 791 7890 141 17 27 chr5 27045207 27047328 -125489931 + L1_Mus2 LINE L1 355 2478 -1436 7 791 15350 112 14 8 chr5 27047328 27050369 -125486890 + L1_Mus2 LINE L1 3502 6566 0 7 791 1112 240 19 23 chr5 27050490 27050746 -125486513 - Lx8 LINE L1 -221 7252 6998 7 791 301 286 23 29 chr5 27051914 27052033 -125485226 + MTEa LTR MaLR 19 130 -249 7 791 1211 251 66 44 chr5 27052088 27052451 -125484808 - MTE2b LTR MaLR -8 371 1 7 791 848 268 56 30 chr5 27053677 27053987 -125483272 - MTE2b LTR MaLR -15 364 1 7 791 186 291 113 28 chr5 27054066 27054172 -125483087 + MIRb SINE MIR 123 237 -31 7 791 300 53 0 0 chr5 27054271 27054309 -125482950 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 791 602 264 16 0 chr5 27054311 27054440 -125482819 - ID_B1 SINE B4 -13 211 81 8 791 350 234 32 0 chr5 27054441 27054545 -125482714 + L1M2 LINE L1 5544 5650 -506 8 791 546 269 33 72 chr5 27054598 27054778 -125482481 - ORR1E LTR MaLR -186 173 1 8 791 1223 68 7 0 chr5 27055111 27055258 -125482001 + B1_Mus1 SINE Alu 1 148 0 8 791 284 0 0 27 chr5 27055350 27055387 -125481872 + (TTA)n Simple_repeat Simple_repeat 1 36 0 8 791 373 324 105 26 chr5 27055408 27055560 -125481699 - RSINE1 SINE B4 0 165 2 8 791 334 204 75 0 chr5 27055566 27055659 -125481600 - L1MC3 LINE L1 -1183 6602 6503 8 791 402 275 181 23 chr5 27056253 27056380 -125480879 - B3 SINE B2 -66 150 3 8 791 315 261 51 29 chr5 27056660 27056798 -125480461 + RLTR42-int LTR ERVK 1175 1315 -4207 8 791 4008 45 0 0 chr5 27056932 27057444 -125479815 - L1_Mm LINE L1 -128 5755 5244 9 791 478 269 55 18 chr5 27057502 27057612 -125479647 - B3A SINE B2 -77 121 8 9 791 758 281 10 10 chr5 27057622 27057820 -125479439 - B3A SINE B2 0 198 1 9 791 1716 230 31 6 chr5 27058205 27058520 -125478739 + ORR1D2 LTR MaLR 3 326 -44 9 791 672 314 68 27 chr5 27058520 27058788 -125478471 - ORR1E LTR MaLR -3 375 58 9 791 3380 30 5 0 chr5 27058788 27059182 -125478077 - MTA_Mm LTR MaLR 0 396 1 9 791 238 331 196 49 chr5 27059182 27059240 -125478019 - ORR1E LTR MaLR -321 57 1 9 791 1163 256 15 18 chr5 27059291 27059565 -125477694 + B4 SINE B4 2 274 -18 9 791 223 232 0 55 chr5 27059573 27059646 -125477613 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 9 791 1860 148 70 0 chr5 27059955 27060253 -125477006 - ORR1A1 LTR MaLR -8 338 20 9 791 24665 126 52 63 chr5 27060915 27063785 -125473474 - L1_Mus2 LINE L1 0 6566 3670 9 791 962 100 7 14 chr5 27063785 27063927 -125473332 - B1_Mus1 SINE Alu 0 148 8 1 791 24665 126 52 63 chr5 27063927 27067166 -125470093 - L1_Mus2 LINE L1 0 3669 398 9 791 480 267 120 58 chr5 27067933 27067977 -125469282 - RLTR12B LTR ERVK -26 502 459 1 791 347 16 62 31 chr5 27067977 27068041 -125469218 + (TTATA)n Simple_repeat Simple_repeat 2 67 0 1 791 1407 193 111 24 chr5 27068041 27068412 -125468847 - RLTR12B LTR ERVK -70 458 1 1 791 519 148 0 0 chr5 27068658 27068746 -125468513 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 791 180 0 0 0 chr5 27068882 27068902 -125468357 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 1 791 586 158 0 68 chr5 27068904 27069094 -125468165 + CT-rich Low_complexity Low_complexity 2 178 0 1 791 501 17 0 0 chr5 27069094 27069152 -125468107 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 791 302 284 188 8 chr5 27069338 27069455 -125467804 - L1M5 LINE L1 -3065 3081 2944 1 791 486 49 0 0 chr5 27069880 27069941 -125467318 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 791 308 313 26 45 chr5 27069970 27070124 -125467135 - L1M2 LINE L1 -3321 2822 2672 1 791 423 181 0 0 chr5 27070404 27070476 -125466783 + Lx8 LINE L1 7072 7143 -330 1 791 929 292 108 54 chr5 27070500 27071036 -125466223 + RLTR40 LTR ERVK 1 565 -252 1 791 641 158 7 0 chr5 27071337 27071476 -125465783 + CT-rich Low_complexity Low_complexity 1 140 0 1 791 339 138 0 0 chr5 27072395 27072451 -125464808 - PB1D7 SINE Alu -49 68 13 1 791 279 293 70 2 chr5 27072451 27072480 -125464779 - ID_B1 SINE B4 -75 149 65 1 791 222 229 18 27 chr5 27072483 27072595 -125464664 + (TATG)n Simple_repeat Simple_repeat 4 114 0 1 791 367 227 6 38 chr5 27072616 27072799 -125464460 + (TATG)n Simple_repeat Simple_repeat 4 180 0 1 791 389 288 25 0 chr5 27074535 27074653 -125462606 - ID_B1 SINE B4 -35 189 69 1 791 294 271 0 24 chr5 27075117 27075287 -125461972 + (TATATG)n Simple_repeat Simple_repeat 6 171 0 1 791 534 256 88 46 chr5 27075319 27075564 -125461695 + ORR1D2 LTR MaLR 8 272 -87 1 791 618 14 0 0 chr5 27075832 27075903 -125461356 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 1 791 414 315 49 0 chr5 27076324 27076486 -125460773 - RMER15 LTR ERVL -17 558 389 1 791 669 119 52 13 chr5 27076740 27076893 -125460366 + CT-rich Low_complexity Low_complexity 4 162 0 1 791 334 280 9 18 chr5 27076894 27077003 -125460256 - RMER15-int LTR ERVL -26 4973 4866 1 791 300 212 0 0 chr5 27077133 27077199 -125460060 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 791 2804 183 91 110 chr5 27077751 27078670 -125458589 - RLTR13D6 LTR ERVK 0 902 1 1 791 216 0 0 0 chr5 27078901 27078925 -125458334 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 1 791 1177 62 7 0 chr5 27078925 27079071 -125458188 - B1_Mm SINE Alu 0 147 1 1 791 861 170 122 5 chr5 27079650 27079839 -125457420 - ORR1C2 LTR MaLR 0 384 174 1 791 699 161 0 0 chr5 27079839 27080019 -125457240 + GA-rich Low_complexity Low_complexity 1 180 0 1 791 213 151 0 0 chr5 27080020 27080073 -125457186 + (CAGAGA)n Simple_repeat Simple_repeat 4 56 0 1 791 812 213 64 12 chr5 27080073 27080310 -125456949 - ORR1D1 LTR MaLR -119 265 12 1 791 3253 96 47 52 chr5 27080536 27081051 -125456208 - RLTR1B LTR ERV1 0 512 1 1 791 351 291 56 46 chr5 27081264 27081372 -125455887 + RSINE1 SINE B4 41 149 -16 1 791 25 31 0 0 chr5 27081421 27081453 -125455806 + AT_rich Low_complexity Low_complexity 1 32 0 1 791 198 0 0 0 chr5 27081600 27081622 -125455637 + (T)n Simple_repeat Simple_repeat 1 22 0 1 791 227 60 0 74 chr5 27082391 27082445 -125454814 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 791 1725 208 169 16 chr5 27082701 27083146 -125454113 + RMER15 LTR ERVL 27 539 -36 1 791 547 291 89 39 chr5 27083666 27083923 -125453336 + B4A SINE B4 4 273 -19 1 791 252 0 0 0 chr5 27083947 27083975 -125453284 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 791 414 0 0 0 chr5 27083975 27084020 -125453239 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 791 977 283 126 39 chr5 27085384 27085812 -125451447 + Lx8 LINE L1 6859 7330 -143 1 791 255 61 0 0 chr5 27085812 27085845 -125451414 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1 791 977 283 126 39 chr5 27085845 27085979 -125451280 + Lx8 LINE L1 7331 7469 -4 1 791 897 120 155 6 chr5 27087087 27087255 -125450004 + URR1A DNA MER1_type 5 197 -29 1 791 498 259 59 63 chr5 27087255 27087342 -125449917 - CYRA11_Mm Unknown Y-chromosome -235 382 129 1 791 1225 40 0 0 chr5 27087416 27087568 -125449691 + L1_Mus1 LINE L1 6416 6567 0 1 791 512 248 189 0 chr5 27087611 27087764 -125449495 - B3A SINE B2 -16 182 1 1 791 1023 229 31 49 chr5 27089359 27089710 -125447549 - BGLII_B LTR ERVK -6 435 69 1 791 444 165 48 24 chr5 27089764 27090013 -125447246 + (TAGA)n Simple_repeat Simple_repeat 1 255 0 1 791 247 179 30 0 chr5 27090032 27090099 -125447160 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 1 791 29 60 0 0 chr5 27090139 27090189 -125447070 + AT_rich Low_complexity Low_complexity 1 50 0 1 791 459 0 0 0 chr5 27090604 27090655 -125446604 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 791 306 0 0 0 chr5 27090655 27090688 -125446571 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 791 450 0 0 0 chr5 27090688 27090737 -125446522 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 791 2180 173 124 19 chr5 27091714 27092191 -125445068 + RLTR24 LTR ERV1 1 527 -2 1 791 398 53 0 17 chr5 27092458 27092516 -125444743 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 1 791 1069 81 0 0 chr5 27092516 27092652 -125444607 - B1_Mm SINE Alu -10 137 2 1 791 678 291 68 11 chr5 27092662 27092853 -125444406 - B3 SINE B2 -6 210 9 1 791 348 88 0 0 chr5 27093355 27093412 -125443847 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 791 288 253 37 25 chr5 27093836 27093917 -125443342 - MER58C DNA MER1_type -2 213 132 1 791 550 280 23 0 chr5 27094007 27094139 -125443120 - B3 SINE B2 -80 136 2 1 791 845 302 139 27 chr5 27094141 27094509 -125442750 - MTE-int LTR MaLR -990 590 182 1 791 242 212 29 57 chr5 27094699 27094769 -125442490 + ID4 SINE ID 3 70 -13 1 791 2297 148 93 8 chr5 27095086 27095474 -125441785 + MTC LTR MaLR 1 421 0 1 791 2172 215 34 40 chr5 27095687 27096215 -125441044 + RLTR11A LTR ERVK 1 525 -3 1 791 906 281 36 134 chr5 27096272 27096683 -125440576 + MTE2a LTR MaLR 1 371 -8 1 791 230 354 29 29 chr5 27097218 27097320 -125439939 + B4A SINE B4 144 245 -47 1 791 260 289 147 60 chr5 27097398 27097582 -125439677 - RMER20A LTR ERVK -38 589 390 1 791 4571 164 73 8 chr5 27097588 27098411 -125438848 - Lx4B LINE L1 -3 7055 6180 1 791 2929 130 26 33 chr5 27098411 27098953 -125438306 + Lx4B LINE L1 5613 6150 -908 1 791 726 228 272 28 chr5 27098953 27099333 -125437926 - RMER20A LTR ERVK -431 429 1 1 791 351 0 0 0 chr5 27099389 27099428 -125437831 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 791 180 0 0 0 chr5 27099496 27099516 -125437743 + (ATG)n Simple_repeat Simple_repeat 2 21 0 1 791 222 37 0 0 chr5 27099516 27099543 -125437716 + (GGA)n Simple_repeat Simple_repeat 2 28 0 1 791 1473 47 0 0 chr5 27099826 27100081 -125437178 + (GAA)n Simple_repeat Simple_repeat 1 255 0 1 791 3102 51 8 8 chr5 27101444 27101840 -125435419 - MTA_Mm LTR MaLR 0 396 1 1 791 827 265 72 0 chr5 27101860 27102041 -125435218 - B3 SINE B2 -22 194 1 1 791 323 291 70 63 chr5 27102105 27102263 -125434996 + MER82 DNA MER2_type 396 554 -99 1 791 442 81 0 0 chr5 27102745 27102807 -125434452 + Lx2 LINE L1 6582 6643 -354 1 791 1130 146 0 19 chr5 27102807 27103017 -125434242 + Lx2 LINE L1 6775 6980 -17 1 791 211 73 23 47 chr5 27103056 27103099 -125434160 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 1 791 222 118 0 0 chr5 27103207 27103241 -125434018 + (A)n Simple_repeat Simple_repeat 1 34 0 1 791 246 220 0 0 chr5 27103267 27103326 -125433933 + A-rich Low_complexity Low_complexity 5 63 0 1 791 332 256 134 8 chr5 27103432 27103566 -125433693 - Lx8 LINE L1 -84 7389 7239 1 791 723 292 64 64 chr5 27103576 27103967 -125433292 + Lx8 LINE L1 6379 6769 -704 1 791 891 271 86 9 chr5 27104027 27104492 -125432767 + L1M2 LINE L1 3403 3903 -2240 1 791 724 248 109 41 chr5 27104551 27104976 -125432283 + Lx8 LINE L1 5475 5949 -1524 1 791 1347 264 76 22 chr5 27105389 27105838 -125431421 + Lx8 LINE L1 6189 6661 -812 1 791 297 253 24 54 chr5 27105853 27106020 -125431239 + Lx8 LINE L1 7306 7467 -6 1 791 664 314 21 34 chr5 27106405 27106799 -125430460 + Lx8 LINE L1 6937 7307 -166 1 791 234 0 0 0 chr5 27107005 27107031 -125430228 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 1 791 383 312 0 7 chr5 27107589 27107734 -125429525 + L1M3 LINE L1 4240 4383 -1757 1 791 1087 267 155 37 chr5 27108026 27108400 -125428859 - MTD LTR MaLR -1 418 1 1 791 26 30 0 0 chr5 27108942 27108975 -125428284 + AT_rich Low_complexity Low_complexity 1 33 0 1 791 21 0 0 0 chr5 27109070 27109091 -125428168 + AT_rich Low_complexity Low_complexity 1 21 0 1 791 1163 260 80 68 chr5 27109317 27109365 -125427894 - MT2A LTR ERVL -11 522 479 1 791 2483 84 3 0 chr5 27109365 27109688 -125427571 - ORR1A2 LTR MaLR -3 324 1 1 791 1163 260 80 68 chr5 27109688 27110155 -125427104 - MT2A LTR ERVL -55 478 1 1 791 339 150 0 0 chr5 27110155 27110215 -125427044 - MERVL_2A-int LTR ERVL 0 5761 5702 1 791 1536 118 72 0 chr5 27110241 27110504 -125426755 - MERVL_2A-int LTR ERVL -359 5402 5121 1 791 9181 180 38 2 chr5 27110511 27112243 -125425016 - MERVL_2A-int LTR ERVL -930 4831 3030 1 791 1032 239 14 0 chr5 27112244 27112462 -125424797 - MERVL_2A-int LTR ERVL -2877 2884 2664 1 791 2532 243 96 98 chr5 27112462 27113323 -125423936 + RMER13A LTR ERVK 1 860 0 1 791 224 288 0 59 chr5 27113561 27113646 -125423613 + C-rich Low_complexity Low_complexity 1 80 0 1 791 21 57 0 0 chr5 27114380 27114415 -125422844 + AT_rich Low_complexity Low_complexity 1 35 0 1 791 494 212 10 0 chr5 27114477 27114576 -125422683 + RMER17A-int LTR ERVK 988 1087 -641 1 791 382 172 0 0 chr5 27114712 27114776 -125422483 - MERVL_2A-int LTR ERVL -3109 2652 2589 1 791 633 154 55 39 chr5 27114779 27114907 -125422352 - RMER4B LTR ERVK -3 582 453 1 791 4863 161 51 12 chr5 27114907 27115712 -125421547 - Lx4B LINE L1 -8 7050 6215 1 791 21261 144 50 75 chr5 27115733 27116805 -125420454 - L1_Mur2 LINE L1 -44 5833 4749 1 791 3507 109 82 26 chr5 27116805 27117342 -125419917 + RMER2 LTR ERV1 1 567 0 1 791 21261 144 50 75 chr5 27117342 27118547 -125418712 - L1_Mur2 LINE L1 -1129 4748 3528 1 791 1342 44 0 0 chr5 27118547 27118706 -125418553 + B2_Mm1a SINE B2 2 160 -33 1 791 396 0 0 0 chr5 27118706 27118750 -125418509 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 1 791 21261 144 50 75 chr5 27118750 27119530 -125417729 - L1_Mur2 LINE L1 -2350 3527 2708 1 791 1788 57 0 0 chr5 27119530 27119742 -125417517 - L1_Mus1 LINE L1 0 6567 6356 1 791 21261 144 50 75 chr5 27119742 27120387 -125416872 - L1_Mur2 LINE L1 -3170 2707 2051 1 791 363 23 0 0 chr5 27120387 27120431 -125416828 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 791 21261 144 50 75 chr5 27120431 27121139 -125416120 - L1_Mur2 LINE L1 -3827 2050 1378 1 791 1329 275 59 9 chr5 27121574 27121912 -125415347 - MTEa LTR MaLR -2 377 23 2 791 693 242 64 16 chr5 27121946 27122212 -125415047 - L1MDb LINE L1 -5108 1394 1080 2 791 980 286 10 88 chr5 27122238 27122545 -125414714 - B4 SINE B4 0 292 10 2 791 606 219 8 31 chr5 27123174 27123301 -125413958 - B3 SINE B2 -43 173 50 2 791 294 87 0 0 chr5 27123308 27123354 -125413905 + (A)n Simple_repeat Simple_repeat 1 46 0 2 791 228 182 23 0 chr5 27123354 27123398 -125413861 - B3 SINE B2 -171 45 1 2 791 1113 236 64 135 chr5 27124419 27124870 -125412389 + MTD LTR MaLR 1 419 0 2 791 323 317 52 47 chr5 27125259 27125471 -125411788 + Lx8 LINE L1 7207 7419 -54 2 791 760 358 22 7 chr5 27125827 27126103 -125411156 - B4A SINE B4 -12 280 1 2 791 252 303 116 90 chr5 27126872 27127285 -125409974 + Lx8 LINE L1 7045 7468 -5 2 791 258 244 57 57 chr5 27127404 27127526 -125409733 + L1MB4 LINE L1 6027 6148 -32 2 791 248 254 42 14 chr5 27127569 27127641 -125409618 - MamRep434 DNA TcMar -291 135 62 2 791 1225 287 53 17 chr5 27127683 27128044 -125409215 - MTE2a LTR MaLR -5 374 1 2 791 22 0 0 0 chr5 27128125 27128147 -125409112 + AT_rich Low_complexity Low_complexity 1 22 0 2 791 468 51 0 0 chr5 27128202 27128261 -125408998 + (GA)n Simple_repeat Simple_repeat 2 60 0 2 791 342 0 0 0 chr5 27128335 27128373 -125408886 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 791 301 316 151 6 chr5 27128774 27128933 -125408326 - ORR1E-int LTR MaLR -1395 185 4 2 791 299 346 87 76 chr5 27128939 27129283 -125407976 - ORR1E LTR MaLR -1 358 11 2 791 661 110 17 0 chr5 27129394 27129512 -125407747 + (TG)n Simple_repeat Simple_repeat 2 121 0 2 791 2509 140 56 2 chr5 27129682 27129981 -125407278 + Lx2 LINE L1 6567 6866 -131 2 791 225 0 0 0 chr5 27129981 27130006 -125407253 + (TGGG)n Simple_repeat Simple_repeat 1 25 0 2 791 2509 140 56 2 chr5 27130006 27130115 -125407144 + Lx2 LINE L1 6867 6996 -1 2 792 1127 238 0 5 chr5 27132705 27132916 -125404343 + B3 SINE B2 1 210 -6 2 792 1218 283 21 64 chr5 27133350 27133727 -125403532 + ORR1D2 LTR MaLR 8 368 -2 2 792 1222 65 23 29 chr5 27133770 27133945 -125403314 + L1_Mus4 LINE L1 6463 6636 0 2 792 618 131 0 0 chr5 27133945 27134044 -125403215 + (GGAA)n Simple_repeat Simple_repeat 2 100 0 2 792 517 278 114 68 chr5 27134374 27134594 -125402665 + B4A SINE B4 2 231 -61 2 792 2136 89 49 3 chr5 27134599 27134904 -125402355 + ORR1A2 LTR MaLR 1 319 -8 2 792 355 335 92 33 chr5 27135039 27135311 -125401948 + L1MCb LINE L1 393 680 -5365 2 792 256 204 0 39 chr5 27135574 27135625 -125401634 + G-rich Low_complexity Low_complexity 1 49 0 2 792 927 277 14 0 chr5 27135649 27135862 -125401397 - B3 SINE B2 0 216 1 2 792 248 289 22 0 chr5 27135870 27135960 -125401299 + L1MCb LINE L1 1177 1268 -5483 2 792 223 121 35 0 chr5 27135969 27136027 -125401232 + T-rich Low_complexity Low_complexity 2 61 0 2 792 2556 169 89 26 chr5 27136317 27136845 -125400414 - RLTR31_Mm LTR ERVK 0 561 1 2 792 349 205 192 22 chr5 27137178 27137407 -125399852 + L1MCb LINE L1 2383 2650 -4101 2 792 714 146 0 0 chr5 27137596 27137818 -125399441 + (CA)n Simple_repeat Simple_repeat 1 222 0 2 792 234 0 0 0 chr5 27138010 27138036 -125399223 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 2 792 1077 209 26 11 chr5 27138043 27138232 -125399027 - B3 SINE B2 -24 192 1 2 792 664 271 159 46 chr5 27138255 27138816 -125398443 + L1MCb LINE L1 2664 3287 -3277 2 792 256 272 195 38 chr5 27138853 27139120 -125398139 + L1ME2 LINE L1 5790 6098 -66 2 792 738 101 0 32 chr5 27139812 27139935 -125397324 - Lx LINE L1 -2 6652 6534 2 792 2721 120 32 12 chr5 27139936 27140470 -125396789 - Lx LINE L1 -653 6001 5430 2 792 3275 66 2 34 chr5 27140470 27140879 -125396380 + MTA_Mm LTR MaLR 1 396 0 2 792 2542 141 106 25 chr5 27140879 27140905 -125396354 - Lx LINE L1 -454 5429 5404 2 792 7019 79 69 2 chr5 27141005 27142163 -125395096 - L1_Mus3 LINE L1 0 6638 5404 2 792 217 219 15 59 chr5 27142173 27142241 -125395018 + CT-rich Low_complexity Low_complexity 5 69 0 2 792 21 0 0 0 chr5 27145904 27145925 -125391334 + AT_rich Low_complexity Low_complexity 1 21 0 2 792 688 303 6 6 chr5 27146737 27146903 -125390356 - B4 SINE B4 -13 279 114 2 792 766 177 214 6 chr5 27146878 27147060 -125390199 - URR1B DNA MER1_type -5 220 1 2 792 1992 168 60 9 chr5 27147728 27148077 -125389182 + ORR1B2 LTR MaLR 1 367 0 2 792 1510 234 123 38 chr5 27148281 27148761 -125388498 - Lx8 LINE L1 -4 7469 6949 2 792 368 231 13 13 chr5 27148782 27148861 -125388398 - RMER30 DNA MER1_type -122 80 2 2 792 384 22 0 0 chr5 27149578 27149623 -125387636 + (CTTTG)n Simple_repeat Simple_repeat 3 47 0 2 792 234 0 0 0 chr5 27149629 27149655 -125387604 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2 792 900 304 108 13 chr5 27150278 27150658 -125386601 + Lx8 LINE L1 7058 7473 0 2 792 665 24 12 0 chr5 27151194 27151277 -125385982 + (GA)n Simple_repeat Simple_repeat 2 85 0 2 792 306 339 69 50 chr5 27151446 27151763 -125385496 + L1MEf LINE L1 566 888 -5312 2 792 479 295 40 17 chr5 27151915 27152091 -125385168 - RMER15 LTR ERVL -16 559 380 2 792 1627 182 66 13 chr5 27152263 27152580 -125384679 - ORR1B2 LTR MaLR 0 367 34 2 792 537 92 0 0 chr5 27152615 27152691 -125384568 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 792 900 0 0 0 chr5 27152771 27152871 -125384388 + (CAAAG)n Simple_repeat Simple_repeat 3 102 0 2 792 282 240 109 10 chr5 27153710 27153811 -125383448 + MER2 DNA MER2_type 104 214 -131 2 792 781 272 43 10 chr5 27154297 27154505 -125382754 - ID_B1 SINE B4 -8 216 2 2 792 727 174 21 42 chr5 27155152 27155296 -125381963 + RMER1C Other Other 1198 1338 -4 2 792 440 35 17 0 chr5 27155888 27155946 -125381313 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 792 838 286 42 101 chr5 27155951 27156239 -125381020 - B4 SINE B4 -21 271 1 2 792 267 294 99 52 chr5 27156240 27156452 -125380807 - L1MD LINE L1 -782 5577 5356 2 792 1690 131 73 73 chr5 27156494 27156848 -125380411 + RMER4B LTR ERVK 1 354 -231 2 792 9353 139 12 6 chr5 27156851 27158302 -125378957 + MurERV4-int LTR ERVK 2070 3530 -1730 2 792 720 218 0 0 chr5 27158302 27158476 -125378783 + GA-rich Low_complexity Low_complexity 2 175 0 2 792 9215 163 32 35 chr5 27158477 27159786 -125377473 + MurERV4-int LTR ERVK 3516 4866 -394 2 792 379 153 202 10 chr5 27159786 27159885 -125377374 + PB1D9 SINE Alu 1 118 -2 2 792 9215 163 32 35 chr5 27159885 27160317 -125376942 + MurERV4-int LTR ERVK 4867 5252 -8 2 792 511 202 0 58 chr5 27160323 27160413 -125376846 + RMER4B LTR ERVK 1 83 -383 2 792 833 128 26 20 chr5 27160413 27160565 -125376694 - RLTR26 LTR ERVK 0 642 490 2 792 725 195 24 0 chr5 27160568 27160691 -125376568 - RLTR26 LTR ERVK -516 126 1 2 792 430 141 0 0 chr5 27160691 27160755 -125376504 + RMER4B LTR ERVK 83 146 -439 2 792 548 190 50 25 chr5 27160767 27160886 -125376373 + RMER4B LTR ERVK 464 585 0 2 792 3722 168 15 97 chr5 27161195 27161823 -125375436 + L1_Mur2 LINE L1 4665 5298 -585 2 792 1929 122 25 28 chr5 27161823 27162143 -125375116 - ORR1A3 LTR MaLR -7 319 1 2 792 3722 168 15 97 chr5 27162143 27162533 -125374726 + L1_Mur2 LINE L1 5299 5694 -189 2 792 1478 273 102 31 chr5 27162526 27163195 -125374064 - L1_Rod LINE L1 -52 5795 5080 2 792 774 264 42 38 chr5 27163385 27163708 -125373551 - L1_Mur3 LINE L1 -3082 3058 2691 2 792 831 255 25 32 chr5 27163705 27163988 -125373271 - L1M2 LINE L1 -1193 4950 4670 2 792 324 236 0 0 chr5 27163993 27164065 -125373194 - L1_Mur3 LINE L1 -3183 2697 2626 2 792 535 291 98 33 chr5 27164267 27164573 -125372686 - L1M4c LINE L1 -3703 2676 2351 2 792 266 211 204 66 chr5 27165054 27165083 -125372176 - L1M4c LINE L1 -4665 1719 1697 2 792 3471 106 4 35 chr5 27165083 27165573 -125371686 - MT2C_Mm LTR ERVL 0 475 1 2 792 266 211 204 66 chr5 27165573 27165695 -125371564 - L1M4c LINE L1 -4688 1696 1548 2 792 23 0 0 0 chr5 27166195 27166218 -125371041 + AT_rich Low_complexity Low_complexity 1 23 0 2 792 222 346 0 0 chr5 27166268 27166369 -125370890 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 792 375 344 25 37 chr5 27166372 27166535 -125370724 - RSINE1 SINE B4 0 165 5 2 792 2383 38 7 3 chr5 27168618 27168911 -125368348 + L1Md_F2 LINE L1 6281 6574 -8 2 792 249 383 109 20 chr5 27168924 27169273 -125367986 + Tigger7 DNA MER2_type 11 390 -2101 2 792 600 213 21 7 chr5 27169289 27169431 -125367828 - B3 SINE B2 0 216 73 2 792 270 153 53 53 chr5 27169716 27169792 -125367467 - B3 SINE B2 -139 77 2 2 792 548 121 11 0 chr5 27169895 27169986 -125367273 + (GAAA)n Simple_repeat Simple_repeat 2 93 0 2 792 234 279 0 32 chr5 27169986 27170049 -125367210 + Tigger7 DNA MER2_type 2391 2451 -40 2 792 264 30 0 0 chr5 27171324 27171357 -125365902 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 792 1746 152 135 19 chr5 27172233 27172603 -125364656 + MTC LTR MaLR 9 421 0 2 792 272 310 0 11 chr5 27173262 27173350 -125363909 - L1MA9 LINE L1 -49 6263 6177 2 792 201 254 0 0 chr5 27173466 27173521 -125363738 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 792 288 130 0 0 chr5 27173564 27173610 -125363649 + (TCTCCC)n Simple_repeat Simple_repeat 1 46 0 2 792 664 225 207 6 chr5 27175042 27175060 -125362199 - B3 SINE B2 -7 209 185 2 792 577 69 0 22 chr5 27175060 27175149 -125362110 + (TA)n Simple_repeat Simple_repeat 1 87 0 2 792 664 225 207 6 chr5 27175149 27175304 -125361955 - B3 SINE B2 -32 184 1 2 792 1113 144 114 0 chr5 27175658 27175859 -125361400 - URR1A DNA MER1_type -2 224 1 2 792 414 243 189 0 chr5 27176185 27176333 -125360926 - Lx7 LINE L1 -783 6913 6738 2 792 1005 194 20 0 chr5 27176365 27176561 -125360698 - URR1B DNA MER1_type 0 225 26 2 792 905 302 115 48 chr5 27176571 27177033 -125360226 + Lx8 LINE L1 6975 7467 -6 2 792 230 317 0 35 chr5 27176960 27177045 -125360214 + RMER1C Other Other 1245 1326 -16 2 792 2218 165 5 8 chr5 27177858 27178249 -125359010 + ORR1B1 LTR MaLR 2 391 -3 2 792 431 264 234 0 chr5 27178633 27178800 -125358459 + B3 SINE B2 1 206 -10 2 792 373 268 8 32 chr5 27182704 27183026 -125354233 + (CATA)n Simple_repeat Simple_repeat 1 314 0 2 792 1592 176 85 28 chr5 27183367 27183550 -125353709 + ORR1C2 LTR MaLR 1 188 -196 2 792 429 104 0 0 chr5 27183550 27183627 -125353632 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 2 792 1592 176 85 28 chr5 27183627 27183806 -125353453 + ORR1C2 LTR MaLR 189 384 0 2 792 648 258 6 14 chr5 27184662 27184856 -125352403 + MTD LTR MaLR 1 190 -231 2 792 588 303 32 16 chr5 27185179 27185367 -125351892 - Lx8 LINE L1 -697 6776 6586 2 792 1416 204 60 28 chr5 27185371 27185782 -125351477 + RLTR20D LTR ERVK 4 461 -107 2 792 378 0 0 0 chr5 27185782 27185824 -125351435 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 792 1252 201 83 0 chr5 27185824 27185912 -125351347 + RLTR20D LTR ERVK 462 567 -1 2 792 1233 225 78 4 chr5 27185935 27186203 -125351056 - Lx8 LINE L1 -904 6569 6282 2 792 340 268 5 2 chr5 27186211 27186303 -125350956 - PB1D10 SINE Alu -9 111 18 2 792 236 197 81 16 chr5 27186319 27186381 -125350878 - L1M5 LINE L1 -2570 3576 3511 3 792 492 48 0 0 chr5 27186387 27186450 -125350809 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 3 792 1365 181 81 4 chr5 27186733 27187005 -125350254 + ORR1C2 LTR MaLR 92 384 0 3 792 3360 48 2 2 chr5 27187133 27187529 -125349730 - MTA_Mm LTR MaLR 0 396 1 3 792 678 256 20 30 chr5 27187562 27187582 -125349677 - B3 SINE B2 -11 205 189 3 792 315 0 0 0 chr5 27187582 27187617 -125349642 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 792 678 256 20 30 chr5 27187617 27187793 -125349466 - B3 SINE B2 -28 188 11 3 792 824 305 106 45 chr5 27187818 27188597 -125348662 - L1MD LINE L1 -2870 3276 2432 3 792 4653 59 0 0 chr5 27188638 27189200 -125348059 + L1_Mus1 LINE L1 6006 6567 0 3 792 274 280 152 6 chr5 27191610 27191768 -125345491 + L2 LINE L2 2666 2846 -573 3 792 279 326 113 14 chr5 27191961 27192182 -125345077 + MLT2B2 LTR ERVL 1 243 -311 3 792 312 330 1 0 chr5 27192194 27192298 -125344961 + MLT2B2 LTR ERVL 352 456 -111 3 792 568 236 21 141 chr5 27192492 27192684 -125344575 + B3 SINE B2 47 215 -1 3 792 203 286 26 0 chr5 27192784 27192861 -125344398 + (CATATA)n Simple_repeat Simple_repeat 1 79 0 3 792 241 319 0 0 chr5 27193472 27193544 -125343715 + MER104 DNA Tc2 109 180 -1 3 792 857 260 169 0 chr5 27195239 27195481 -125341778 + B4 SINE B4 8 290 -2 3 792 452 218 0 6 chr5 27195532 27195707 -125341552 + (CA)n Simple_repeat Simple_repeat 2 175 0 3 792 422 239 6 0 chr5 27195749 27195925 -125341334 + (CA)n Simple_repeat Simple_repeat 1 177 0 3 792 335 221 118 35 chr5 27196350 27196519 -125340740 - L1M2 LINE L1 -852 5439 5257 3 792 991 206 0 5 chr5 27196724 27196919 -125340340 - B3 SINE B2 -22 194 1 3 792 561 99 0 0 chr5 27197026 27197107 -125340152 + (GAA)n Simple_repeat Simple_repeat 3 83 0 3 792 513 47 0 0 chr5 27197092 27197156 -125340103 + (GA)n Simple_repeat Simple_repeat 2 65 0 3 792 1973 153 89 9 chr5 27197330 27197679 -125339580 + ORR1C1 LTR MaLR 2 378 0 3 792 406 324 60 20 chr5 27198363 27198514 -125338745 - RMER30 DNA MER1_type -45 157 1 3 792 1014 171 286 52 chr5 27199995 27200303 -125336956 + ORR1C2 LTR MaLR 3 382 -2 3 792 258 276 65 0 chr5 27200435 27200558 -125336701 - ID4 SINE ID -21 131 1 3 792 498 343 63 0 chr5 27200621 27200860 -125336399 - MER58B DNA MER1_type -87 254 1 3 792 264 75 37 19 chr5 27201630 27201684 -125335575 + B3 SINE B2 161 215 -1 3 792 402 21 0 0 chr5 27202268 27202315 -125334944 + (TTG)n Simple_repeat Simple_repeat 2 48 0 3 792 633 237 0 43 chr5 27203012 27203175 -125334084 + B4A SINE B4 85 240 -52 3 792 309 185 0 0 chr5 27203226 27203291 -125333968 + (CGA)n Simple_repeat Simple_repeat 2 66 0 3 792 459 0 0 0 chr5 27203291 27203342 -125333917 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 792 230 195 0 0 chr5 27203739 27203780 -125333479 + B4A SINE B4 187 227 -65 3 792 551 276 8 8 chr5 27203813 27203941 -125333318 + B3 SINE B2 15 142 -74 3 792 216 0 0 0 chr5 27203941 27203965 -125333294 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 792 517 277 25 46 chr5 27204529 27204726 -125332533 - B3A SINE B2 -5 193 1 3 792 862 275 8 37 chr5 27205454 27205722 -125331537 - Lx8 LINE L1 -2 7471 7212 3 792 2560 121 40 52 chr5 27206129 27206555 -125330704 - MTC LTR MaLR 0 421 1 3 792 3375 223 42 87 chr5 27206562 27207706 -125329553 - MTC-int LTR MaLR -5 1093 2 3 792 1350 197 117 115 chr5 27207709 27207953 -125329306 - MTC LTR MaLR 0 421 156 3 792 201 39 0 0 chr5 27207953 27207979 -125329280 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 792 1350 197 117 115 chr5 27207979 27208091 -125329168 - MTC LTR MaLR -266 155 64 3 792 2066 60 4 8 chr5 27208091 27208359 -125328900 - L1Md_F2 LINE L1 0 6582 6316 3 792 1350 197 117 115 chr5 27208359 27208419 -125328840 - MTC LTR MaLR -358 63 3 3 792 328 375 36 13 chr5 27208422 27208646 -125328613 - Cheshire DNA MER1_type -2189 231 3 3 792 465 19 0 0 chr5 27209183 27209237 -125328022 + (CTTG)n Simple_repeat Simple_repeat 1 54 0 3 792 325 244 167 8 chr5 27209240 27209372 -125327887 - MTE2a LTR MaLR -192 187 35 3 792 5039 164 41 19 chr5 27210489 27210609 -125326650 - RMER19B LTR ERVK 0 902 759 3 792 204 40 0 0 chr5 27210609 27210634 -125326625 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 792 5039 164 41 19 chr5 27210634 27211396 -125325863 - RMER19B LTR ERVK -144 758 2 3 792 375 23 0 0 chr5 27211847 27211891 -125325368 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 792 234 232 56 8 chr5 27212082 27212102 -125325157 + ORR1B1-int LTR MaLR 623 648 -861 3 792 1052 82 0 0 chr5 27212102 27212248 -125325011 + B1_Mus2 SINE Alu 2 147 0 3 792 207 0 0 0 chr5 27212251 27212274 -125324985 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 792 224 111 0 0 chr5 27212279 27212315 -125324944 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 3 792 283 301 163 27 chr5 27212386 27212533 -125324726 - L1M4 LINE L1 -5906 636 470 3 792 431 152 9 132 chr5 27213410 27213524 -125323735 - RLTR18B LTR ERVK -412 100 1 3 792 471 232 10 5 chr5 27215480 27215690 -125321569 + (CA)n Simple_repeat Simple_repeat 1 211 0 3 792 33 0 0 0 chr5 27216338 27216371 -125320888 + AT_rich Low_complexity Low_complexity 1 33 0 3 792 411 341 55 36 chr5 27217191 27217465 -125319794 - B4A SINE B4 -2 290 12 3 792 22 0 0 0 chr5 27217489 27217511 -125319748 + AT_rich Low_complexity Low_complexity 1 22 0 3 792 252 0 0 0 chr5 27217584 27217612 -125319647 + (A)n Simple_repeat Simple_repeat 1 28 0 3 792 264 111 0 0 chr5 27217778 27217823 -125319436 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 3 792 297 89 0 0 chr5 27218250 27218295 -125318964 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 792 778 242 15 20 chr5 27218301 27218499 -125318760 - B4 SINE B4 -48 244 48 3 792 1207 61 0 13 chr5 27218549 27218699 -125318560 + B1_Mus1 SINE Alu 1 148 0 3 792 201 94 0 0 chr5 27218699 27218731 -125318528 + (CAAAC)n Simple_repeat Simple_repeat 3 34 0 3 792 569 269 6 57 chr5 27219344 27219502 -125317757 - B3 SINE B2 -58 158 9 3 792 455 239 45 51 chr5 27219887 27220063 -125317196 + MTD LTR MaLR 221 395 -24 3 792 182 270 0 13 chr5 27220870 27220945 -125316314 + GA-rich Low_complexity Low_complexity 4 77 0 3 792 821 248 43 14 chr5 27221547 27221756 -125315503 - B3 SINE B2 0 216 2 3 792 1186 69 7 0 chr5 27222996 27223141 -125314118 + B1_Mus2 SINE Alu 1 146 -1 3 792 201 337 6 12 chr5 27223162 27223333 -125313926 + (ATG)n Simple_repeat Simple_repeat 3 172 0 3 792 2530 121 11 3 chr5 27223550 27223923 -125313336 - L1_Mus3 LINE L1 -62 6576 6201 3 792 920 281 68 37 chr5 27224515 27224836 -125312423 + ORR1E LTR MaLR 1 331 -28 3 792 6120 221 95 75 chr5 27224838 27224959 -125312300 - Lx9 LINE L1 -7 7637 7475 3 792 249 33 0 0 chr5 27224959 27224989 -125312270 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 792 6120 221 95 75 chr5 27224989 27225075 -125312184 - Lx9 LINE L1 -170 7474 7368 3 792 3136 56 8 5 chr5 27225075 27225470 -125311789 + MTA_Mm LTR MaLR 1 396 0 3 792 6120 221 95 75 chr5 27225470 27226235 -125311024 - Lx9 LINE L1 -277 7367 6640 3 792 7158 107 10 13 chr5 27226235 27227261 -125309998 - RLTR13D5 LTR ERVK 0 1023 1 3 792 6120 221 95 75 chr5 27227261 27228180 -125309079 - Lx9 LINE L1 -1005 6639 5707 3 792 799 280 72 10 chr5 27229508 27229824 -125307435 - ORR1D2 LTR MaLR 0 359 5 3 792 234 305 49 0 chr5 27229938 27230020 -125307239 + MLT1A0 LTR MaLR 107 192 -173 3 792 375 113 0 0 chr5 27231278 27231340 -125305919 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 792 495 0 0 0 chr5 27232081 27232136 -125305123 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 792 187 276 43 75 chr5 27233403 27233497 -125303762 - L3b LINE CR1 -287 195 105 3 792 584 278 117 26 chr5 27235703 27235969 -125301290 + B4 SINE B4 3 292 0 3 792 1192 191 19 0 chr5 27237390 27237600 -125299659 - B3 SINE B2 0 216 3 3 792 545 285 7 0 chr5 27237647 27237784 -125299475 - RSINE1 SINE B4 -16 149 12 3 792 310 278 186 44 chr5 27238149 27238394 -125298865 + B4 SINE B4 17 292 0 3 792 429 236 28 180 chr5 27239341 27239558 -125297701 - MTEa LTR MaLR 0 379 196 3 792 257 182 0 0 chr5 27239550 27239594 -125297665 - MTEa LTR MaLR -331 48 5 3 792 213 77 18 55 chr5 27239886 27239941 -125297318 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 3 792 423 334 165 15 chr5 27239944 27240284 -125296975 + L1ME3A LINE L1 5509 5899 -274 3 792 340 316 32 45 chr5 27240374 27240530 -125296729 + Lx8 LINE L1 7080 7233 -240 3 792 254 33 0 0 chr5 27240530 27240560 -125296699 - U6 snRNA snRNA -77 30 1 3 792 432 0 0 0 chr5 27240668 27240716 -125296543 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 3 792 221 0 0 33 chr5 27240716 27240746 -125296513 + (GGAGA)n Simple_repeat Simple_repeat 5 33 0 3 792 1620 197 88 30 chr5 27240874 27241079 -125296180 - ORR1C2 LTR MaLR -1 383 168 3 792 566 28 14 0 chr5 27241079 27241151 -125296108 + (GA)n Simple_repeat Simple_repeat 1 73 0 3 792 1620 197 88 30 chr5 27241151 27241307 -125295952 - ORR1C2 LTR MaLR -217 167 1 3 792 243 313 32 112 chr5 27242439 27242720 -125294539 - MTEa LTR MaLR -6 373 107 3 792 305 238 0 45 chr5 27242732 27242798 -125294461 - MTE2b LTR MaLR -14 365 303 3 792 775 305 43 78 chr5 27242872 27243220 -125294039 - MTE2b LTR MaLR -71 348 13 3 792 3677 172 55 3 chr5 27243544 27244202 -125293057 + RLTR17 LTR ERVK 1 692 0 3 792 511 286 139 12 chr5 27244309 27244560 -125292699 - LTR48 LTR ERV1 -37 750 468 3 792 398 268 108 5 chr5 27244532 27244738 -125292521 - LTR48 LTR ERV1 -335 309 1 3 792 941 308 99 22 chr5 27244783 27245410 -125291849 - MER67C LTR ERV1 -2 709 1 3 792 464 326 181 62 chr5 27247266 27247636 -125289623 + MLT2D LTR ERVL 1 414 0 3 792 21 0 0 0 chr5 27247799 27247820 -125289439 + AT_rich Low_complexity Low_complexity 1 21 0 3 792 1042 92 141 0 chr5 27248821 27248984 -125288275 - B2_Mm1t SINE B2 0 193 8 3 792 242 290 0 68 chr5 27249233 27249307 -125287952 + B4 SINE B4 83 151 -141 3 792 387 0 0 0 chr5 27250011 27250054 -125287205 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 792 1237 61 0 0 chr5 27250135 27250282 -125286977 + B1_Mus2 SINE Alu 1 147 0 3 792 270 0 0 0 chr5 27250478 27250508 -125286751 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 792 432 325 95 16 chr5 27250681 27250934 -125286325 - MER46C DNA MER2_type 0 338 66 4 792 691 280 114 40 chr5 27252150 27252422 -125284837 - B4 SINE B4 0 292 1 4 792 311 121 17 0 chr5 27252857 27252915 -125284344 + (TCC)n Simple_repeat Simple_repeat 2 60 0 4 792 531 262 54 21 chr5 27255628 27255806 -125281453 + B3A SINE B2 4 183 -12 4 792 2126 243 67 137 chr5 27256336 27257284 -125279975 - RMER17B LTR ERVK -77 881 1 4 792 548 228 73 234 chr5 27257964 27258416 -125278843 - MTE2a LTR MaLR 0 379 1 4 792 1901 186 72 19 chr5 27260665 27261042 -125276217 + MTD LTR MaLR 5 401 -18 4 792 405 361 8 8 chr5 27261100 27261231 -125276028 - RSINE1 SINE B4 -29 136 6 4 792 513 0 0 0 chr5 27262642 27262699 -125274560 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 792 279 54 0 0 chr5 27262699 27262736 -125274523 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 12 580 284 56 28 chr5 27262785 27262999 -125274260 - MLT1A0 LTR MaLR -145 220 1 4 793 216 0 0 0 chr5 27263010 27263034 -125274225 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 793 258 215 0 0 chr5 27263696 27263775 -125273484 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 793 338 155 0 40 chr5 27263785 27263859 -125273400 + GA-rich Low_complexity Low_complexity 1 71 0 4 793 697 246 197 20 chr5 27263878 27264081 -125273178 - MTEa LTR MaLR -48 331 93 4 793 35 0 0 0 chr5 27266833 27266868 -125270391 + AT_rich Low_complexity Low_complexity 1 35 0 4 793 208 276 37 62 chr5 27268495 27268576 -125268683 - L2c LINE L2 -35 3352 3274 4 793 216 97 0 0 chr5 27268741 27268772 -125268487 + (A)n Simple_repeat Simple_repeat 1 31 0 4 793 958 258 65 52 chr5 27269346 27269714 -125267545 - MTE2b LTR MaLR -4 375 3 4 793 300 172 0 65 chr5 27270582 27270644 -125266615 + HAL1-3A_ME LINE L1 1961 2018 -840 4 793 902 35 9 0 chr5 27270645 27270759 -125266500 + (GA)n Simple_repeat Simple_repeat 2 116 0 4 793 363 230 0 0 chr5 27271526 27271613 -125265646 + (TA)n Simple_repeat Simple_repeat 1 87 0 4 793 312 158 0 0 chr5 27272462 27272519 -125264740 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 793 2828 155 97 4 chr5 27273583 27274108 -125263151 - RMER4B LTR ERVK -11 574 1 4 793 470 382 62 14 chr5 27274439 27274715 -125262544 + B4A SINE B4 2 290 -2 4 793 256 329 207 0 chr5 27275057 27275197 -125262062 - MLT1C LTR MaLR -1 466 298 4 793 357 297 43 37 chr5 27275214 27275375 -125261884 - MER34 LTR ERV1 -6 536 375 4 793 1165 124 116 24 chr5 27276128 27276335 -125260924 + URR1A DNA MER1_type 1 226 0 4 793 2045 165 30 14 chr5 27276588 27276957 -125260302 - RLTR11B LTR ERVK -78 375 1 4 793 244 314 14 0 chr5 27279742 27279812 -125257447 - ID4_ SINE ID -12 71 1 4 793 224 239 0 0 chr5 27279951 27279997 -125257262 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 793 400 360 59 38 chr5 27280016 27280305 -125256954 - MLT2C1 LTR ERVL -92 305 11 4 793 502 284 46 28 chr5 27280474 27280691 -125256568 + MLT2D LTR ERVL 8 228 -186 4 793 547 289 69 25 chr5 27281075 27281277 -125255982 - B3 SINE B2 0 216 6 4 793 468 35 0 0 chr5 27281403 27281461 -125255798 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 793 327 175 0 16 chr5 27281473 27281537 -125255722 - RSINE1 SINE B4 -30 135 73 4 793 189 107 0 0 chr5 27281678 27281706 -125255553 + (CACCAT)n Simple_repeat Simple_repeat 5 32 0 4 793 336 295 0 0 chr5 27281897 27281975 -125255284 - B4 SINE B4 -214 78 1 4 793 405 0 0 0 chr5 27281983 27282028 -125255231 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 793 648 292 45 45 chr5 27282104 27282326 -125254933 - B4A SINE B4 -49 243 22 4 793 1072 228 133 35 chr5 27282816 27283161 -125254098 - MTEa LTR MaLR 0 379 1 4 793 434 18 18 0 chr5 27284079 27284134 -125253125 + (TC)n Simple_repeat Simple_repeat 2 57 0 4 793 217 118 39 0 chr5 27284138 27284189 -125253070 + (TA)n Simple_repeat Simple_repeat 2 54 0 4 793 381 256 297 18 chr5 27284231 27284450 -125252809 + Lx8 LINE L1 7188 7467 -6 4 793 296 311 157 95 chr5 27286502 27286776 -125250483 + B4 SINE B4 2 292 0 4 793 4010 59 0 0 chr5 27287339 27287831 -125249428 + L1Md_F2 LINE L1 5095 5586 -297 4 793 8178 43 10 4 chr5 27287831 27288821 -125248438 + L1Md_F2 LINE L1 5587 6582 0 4 793 486 0 0 0 chr5 27288826 27288880 -125248379 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 4 793 789 245 107 77 chr5 27289953 27290316 -125246943 - MTE2a LTR MaLR 0 379 6 4 793 1148 232 52 118 chr5 27290562 27290962 -125246297 - MTE2a LTR MaLR -2 377 4 4 793 508 273 45 92 chr5 27290998 27291283 -125245976 - ORR1E LTR MaLR -98 272 10 4 793 839 257 117 15 chr5 27291791 27292056 -125245203 - B4 SINE B4 0 292 1 4 793 973 250 177 6 chr5 27294279 27294601 -125242658 + MTEb LTR MaLR 1 377 -2 4 793 4264 122 21 13 chr5 27294603 27295366 -125241893 - RMER17D2 LTR ERVK 0 809 41 4 793 692 276 7 0 chr5 27295536 27295681 -125241578 + RSINE1 SINE B4 18 163 -2 4 793 278 206 15 0 chr5 27295683 27295751 -125241508 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 793 329 65 0 0 chr5 27295761 27295807 -125241452 - L1Md_F2 LINE L1 -431 6151 6106 4 793 1450 175 74 11 chr5 27295807 27296112 -125241147 - RLTR20B2 LTR ERVK -238 339 1 4 793 268 341 43 14 chr5 27296280 27296420 -125240839 - L1M4 LINE L1 -6378 164 21 4 793 828 262 19 5 chr5 27297901 27298108 -125239151 + B3 SINE B2 2 211 -5 4 793 468 302 99 18 chr5 27298355 27298602 -125238657 - L1MC LINE L1 -1754 4392 4129 4 793 267 31 0 0 chr5 27298863 27298895 -125238364 + (TATG)n Simple_repeat Simple_repeat 2 33 0 4 793 997 234 29 5 chr5 27298903 27299113 -125238146 - B3 SINE B2 -1 215 1 4 793 371 91 76 0 chr5 27299992 27300058 -125237201 + L1_Mus2 LINE L1 6495 6565 -1 4 793 201 175 0 0 chr5 27301277 27301317 -125235942 + GA-rich Low_complexity Low_complexity 1 40 0 4 793 308 329 66 26 chr5 27301321 27301549 -125235710 + MuRRS4-int LTR ERV1 1219 1455 -3608 4 793 285 236 60 52 chr5 27301803 27301919 -125235340 + RLTR6-int LTR ERV1 4236 4352 -3426 4 793 1117 304 41 19 chr5 27302287 27302837 -125234422 + RLTR4_MM-int LTR ERV1 4799 5194 -2407 4 793 348 302 47 0 chr5 27303102 27303208 -125234051 + RLTR19-int LTR ERVK 4376 4486 -1651 4 793 285 29 0 0 chr5 27303678 27303712 -125233547 + (TTTTA)n Simple_repeat Simple_repeat 4 37 0 4 793 312 326 38 8 chr5 27303956 27304089 -125233170 + MuLV-int LTR ERV1 7120 7256 -350 4 793 456 250 44 9 chr5 27303979 27304092 -125233167 + RNERVK23-int LTR ERVK 7411 7527 -690 4 793 1945 143 65 162 chr5 27304259 27304735 -125232524 + RLTR23 LTR ERV1 1 430 0 4 793 856 287 11 23 chr5 27304770 27305030 -125232229 + B4A SINE B4 36 292 0 4 793 423 78 0 0 chr5 27305049 27305113 -125232146 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 793 21 0 0 0 chr5 27305719 27305740 -125231519 + AT_rich Low_complexity Low_complexity 1 21 0 4 793 633 246 82 41 chr5 27305756 27305951 -125231308 - B3 SINE B2 -9 207 5 4 793 297 0 0 0 chr5 27306899 27306932 -125230327 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 793 28 29 0 0 chr5 27307014 27307049 -125230210 + AT_rich Low_complexity Low_complexity 1 35 0 4 793 1110 62 0 0 chr5 27307584 27307730 -125229529 - B2_Mm1t SINE B2 -46 147 2 4 793 1120 273 99 12 chr5 27307900 27308312 -125228947 - RMER5 LTR ERV1 -39 495 48 4 793 250 188 21 0 chr5 27312164 27312212 -125225047 - ORR1E LTR MaLR -310 49 1 4 793 218 233 0 11 chr5 27313203 27313290 -125223969 + (TG)n Simple_repeat Simple_repeat 2 87 0 4 793 443 270 192 12 chr5 27313386 27313626 -125223633 - B4 SINE B4 -7 285 3 4 793 794 304 92 29 chr5 27314079 27314641 -125222618 - L1MA4A LINE L1 -278 6025 5428 4 793 21 0 0 0 chr5 27314721 27314742 -125222517 + AT_rich Low_complexity Low_complexity 1 21 0 4 793 531 0 0 0 chr5 27316215 27316274 -125220985 + (TTTTG)n Simple_repeat Simple_repeat 5 63 0 4 793 534 270 135 0 chr5 27316281 27316444 -125220815 - B3 SINE B2 -30 186 2 4 793 676 271 65 0 chr5 27316451 27316621 -125220638 - ID_B1 SINE B4 -5 219 39 4 793 737 221 13 7 chr5 27317713 27317863 -125219396 + B3A SINE B2 1 151 -47 4 793 496 73 24 0 chr5 27317865 27317947 -125219312 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 793 285 29 0 0 chr5 27318061 27318095 -125219164 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 793 1781 268 95 72 chr5 27319653 27320348 -125216911 - Lx8 LINE L1 -34 7439 6729 4 793 293 332 47 54 chr5 27320554 27320812 -125216447 + Lx8 LINE L1 7156 7411 -62 4 793 276 30 0 0 chr5 27320889 27320922 -125216337 + (TATG)n Simple_repeat Simple_repeat 2 34 0 4 793 763 295 57 45 chr5 27321638 27321805 -125215454 - MTE2b LTR MaLR -17 362 207 4 793 576 0 0 0 chr5 27321805 27321869 -125215390 + (GGGAGA)n Simple_repeat Simple_repeat 3 66 0 4 793 763 295 57 45 chr5 27321869 27322035 -125215224 - MTE2b LTR MaLR -173 206 26 4 793 1606 194 83 122 chr5 27322094 27322375 -125214884 - MTC LTR MaLR -3 418 106 4 793 1166 75 0 0 chr5 27322375 27322522 -125214737 + B1_Mus2 SINE Alu 1 147 0 4 793 1606 194 83 122 chr5 27322522 27322675 -125214584 - MTC LTR MaLR -316 105 1 4 793 3459 93 24 18 chr5 27323505 27324000 -125213259 - Lx3A LINE L1 -3 6978 6481 4 793 345 278 19 38 chr5 27324608 27324765 -125212494 + CT-rich Low_complexity Low_complexity 2 155 0 5 793 768 225 34 23 chr5 27325394 27325571 -125211688 - B3A SINE B2 -15 183 5 5 793 555 16 0 0 chr5 27328093 27328157 -125209102 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 793 396 0 0 0 chr5 27328157 27328200 -125209059 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 793 888 221 66 0 chr5 27328242 27328455 -125208804 - B4A SINE B4 -62 230 4 5 793 307 306 10 0 chr5 27330690 27330788 -125206471 - MER2 DNA MER2_type -126 219 121 5 793 1801 127 21 108 chr5 27331378 27331766 -125205493 - ORR1B1 LTR MaLR 0 394 41 5 793 264 214 43 0 chr5 27332029 27332099 -125205160 + CT-rich Low_complexity Low_complexity 4 76 0 5 793 785 196 29 0 chr5 27332210 27332348 -125204911 + B1_Mur4 SINE Alu 3 144 -6 5 793 3161 162 60 63 chr5 27332929 27333529 -125203730 + RMER6D LTR ERVK 6 616 -104 5 793 1080 53 0 13 chr5 27333529 27333682 -125203577 + L1Md_F3 LINE L1 6434 6584 0 5 793 3161 162 60 63 chr5 27333682 27333794 -125203465 + RMER6D LTR ERVK 617 716 -4 5 793 216 0 0 0 chr5 27334261 27334285 -125202974 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 793 1264 272 53 3 chr5 27335188 27335549 -125201710 + MTEa LTR MaLR 1 379 0 5 793 192 40 0 0 chr5 27337925 27337950 -125199309 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 5 793 422 248 236 0 chr5 27338103 27338260 -125198999 + B3A SINE B2 1 194 -4 5 793 979 106 0 7 chr5 27338694 27338836 -125198423 - B1_Mus2 SINE Alu -6 141 1 5 793 406 290 37 0 chr5 27339053 27339215 -125198044 + L1M4 LINE L1 5101 5268 -878 5 793 390 100 0 0 chr5 27339446 27339506 -125197753 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 793 314 350 53 59 chr5 27340053 27340205 -125197054 + B3 SINE B2 48 198 -18 5 793 438 20 0 0 chr5 27343729 27343780 -125193479 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 793 267 31 0 0 chr5 27343783 27343815 -125193444 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 793 235 216 9 35 chr5 27344410 27344525 -125192734 + CT-rich Low_complexity Low_complexity 6 117 0 5 793 21 36 0 0 chr5 27344681 27344709 -125192550 + AT_rich Low_complexity Low_complexity 1 28 0 5 793 1097 95 0 0 chr5 27345458 27345605 -125191654 - B1_Mus1 SINE Alu 0 148 2 5 793 3158 11 0 3 chr5 27345803 27346150 -125191109 + ORR1A0 LTR MaLR 1 346 0 5 793 12988 53 3 5 chr5 27346150 27347469 -125189790 + ORR1A0-int LTR MaLR 1 1317 -475 5 793 4530 59 2 18 chr5 27347469 27348042 -125189217 + LTRIS2 LTR ERV1 1 564 0 5 793 12988 53 3 5 chr5 27348042 27348516 -125188743 + ORR1A0-int LTR MaLR 1318 1792 0 5 793 2963 40 0 3 chr5 27348516 27348863 -125188396 + ORR1A0 LTR MaLR 1 346 0 5 793 342 156 16 0 chr5 27349039 27349103 -125188156 - MTEa LTR MaLR 0 379 315 5 793 296 143 0 18 chr5 27349111 27349168 -125188091 + GA-rich Low_complexity Low_complexity 4 59 0 5 793 1190 218 102 0 chr5 27349168 27349461 -125187798 - MTEa LTR MaLR -55 324 2 5 793 1036 199 203 10 chr5 27350206 27350496 -125186763 - Lx8 LINE L1 -2 7471 7126 5 793 389 338 138 74 chr5 27350588 27351045 -125186214 + MER77 LTR ERVL 25 510 -97 5 793 279 289 11 32 chr5 27351446 27351539 -125185720 - MLT1A1 LTR MaLR 0 408 318 5 793 551 196 0 7 chr5 27353368 27353512 -125183747 + (CA)n Simple_repeat Simple_repeat 2 144 0 5 793 249 254 0 0 chr5 27353636 27353707 -125183552 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 793 476 32 16 0 chr5 27354632 27354694 -125182565 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 793 1250 233 134 6 chr5 27356274 27356602 -125180657 - ORR1D2 LTR MaLR 0 370 1 5 793 225 65 0 0 chr5 27356646 27356677 -125180582 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 793 474 18 0 0 chr5 27356677 27356731 -125180528 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 793 1605 243 45 5 chr5 27356891 27357288 -125179971 + MTD LTR MaLR 6 418 -1 5 793 821 192 0 7 chr5 27358014 27358161 -125179098 + B1_Mus1 SINE Alu 1 146 -2 5 793 378 0 0 0 chr5 27358857 27358899 -125178360 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 793 639 0 0 0 chr5 27358899 27358969 -125178290 + (GA)n Simple_repeat Simple_repeat 1 71 0 5 793 305 288 29 51 chr5 27358988 27359099 -125178160 - B3A SINE B2 -82 134 22 5 793 307 358 18 9 chr5 27359200 27359310 -125177949 - B4A SINE B4 -180 112 2 5 793 249 256 248 0 chr5 27361194 27361311 -125175948 + Lx8 LINE L1 7185 7330 -143 5 793 414 57 0 0 chr5 27363687 27363740 -125173519 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 793 1990 249 105 30 chr5 27363840 27364691 -125172568 + RMER13A LTR ERVK 1 801 -107 5 793 1268 272 89 69 chr5 27364717 27364797 -125172462 - Lx8 LINE L1 -125 7348 7272 5 793 1294 159 14 5 chr5 27364797 27365018 -125172241 - URR1B DNA MER1_type 0 225 3 5 793 1268 272 89 69 chr5 27365018 27365038 -125172221 - Lx8 LINE L1 -202 7271 7268 5 793 1455 243 11 27 chr5 27365038 27365406 -125171853 + ORR1D2 LTR MaLR 5 366 -4 5 793 1268 272 89 69 chr5 27365406 27365675 -125171584 - Lx8 LINE L1 -206 7267 6972 5 793 369 43 0 0 chr5 27365675 27365722 -125171537 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 793 1268 272 89 69 chr5 27365722 27365902 -125171357 - Lx8 LINE L1 -502 6971 6788 5 793 2897 65 41 20 chr5 27365998 27366390 -125170869 - MTB LTR MaLR 0 400 1 5 793 2309 138 65 3 chr5 27367134 27367505 -125169754 - ORR1B1 LTR MaLR 0 394 1 5 793 621 282 11 16 chr5 27367947 27368131 -125169128 + B3A SINE B2 2 184 -14 5 793 734 206 68 0 chr5 27369980 27370126 -125167133 + RSINE1 SINE B4 3 158 -7 5 793 1541 51 5 5 chr5 27370518 27370717 -125166542 + L1_Mus2 LINE L1 6368 6566 0 5 793 209 57 29 0 chr5 27371068 27371103 -125166156 + (TTTTTG)n Simple_repeat Simple_repeat 5 40 0 5 793 432 37 0 0 chr5 27372457 27372511 -125164748 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 793 398 313 92 33 chr5 27372513 27372665 -125164594 - RSINE1 SINE B4 -2 163 3 5 793 565 256 63 32 chr5 27373501 27373691 -125163568 + B3A SINE B2 1 196 -2 5 793 432 0 0 0 chr5 27374529 27374577 -125162682 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 793 25 31 0 0 chr5 27375177 27375209 -125162050 + AT_rich Low_complexity Low_complexity 1 32 0 5 793 432 0 0 0 chr5 27377864 27377912 -125159347 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 793 246 234 30 30 chr5 27378456 27378522 -125158737 + L1MA9 LINE L1 6125 6190 -122 5 793 198 103 50 33 chr5 27378859 27378919 -125158340 + CT-rich Low_complexity Low_complexity 2 62 0 5 793 978 9 0 0 chr5 27378983 27379094 -125158165 + (GA)n Simple_repeat Simple_repeat 1 111 0 5 793 1247 252 76 3 chr5 27379290 27379632 -125157627 - MTD LTR MaLR 0 419 53 5 793 225 0 0 0 chr5 27379632 27379657 -125157602 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 5 793 222 62 0 0 chr5 27379697 27379729 -125157530 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 793 502 300 67 75 chr5 27379880 27380147 -125157112 + B4 SINE B4 8 272 -20 5 793 180 77 0 0 chr5 27380168 27380194 -125157065 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 5 793 1320 296 24 19 chr5 27380464 27380839 -125156420 + MTE2b LTR MaLR 1 377 -2 5 793 211 356 19 0 chr5 27382165 27382269 -125154990 + CT-rich Low_complexity Low_complexity 3 108 0 5 793 39 38 0 0 chr5 27382733 27382786 -125154473 + AT_rich Low_complexity Low_complexity 1 53 0 5 793 891 97 5 54 chr5 27384201 27384386 -125152873 + T-rich Low_complexity Low_complexity 5 180 0 5 793 392 195 174 0 chr5 27384444 27384559 -125152700 + B2_Mm2 SINE B2 1 148 -50 5 793 423 0 0 0 chr5 27384561 27384608 -125152651 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 793 315 122 0 0 chr5 27384943 27384992 -125152267 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 793 216 0 0 0 chr5 27385669 27385693 -125151566 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 5 793 405 0 0 0 chr5 27385693 27385737 -125151522 + (TCTG)n Simple_repeat Simple_repeat 3 47 0 5 793 817 246 39 20 chr5 27385946 27386149 -125151110 - B3 SINE B2 -9 207 1 5 793 428 294 0 27 chr5 27388344 27388456 -125148803 + B3A SINE B2 74 182 -16 5 793 234 0 0 0 chr5 27388602 27388628 -125148631 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 793 554 322 45 5 chr5 27389349 27389549 -125147710 + RCHARR1 DNA MER1_type 3 210 -764 5 793 1549 246 5 8 chr5 27389541 27389918 -125147341 + RCHARR1 DNA MER1_type 597 972 -2 5 793 373 276 79 20 chr5 27392139 27392342 -125144917 + MLT1A0 LTR MaLR 109 323 -42 5 793 491 294 157 5 chr5 27392701 27392899 -125144360 - RMER15 LTR ERVL 0 575 348 5 793 522 0 0 0 chr5 27393864 27393922 -125143337 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 99 659 308 104 50 chr5 27393924 27394184 -125143075 + B4 SINE B4 17 290 -2 5 794 344 287 50 22 chr5 27394522 27394661 -125142598 - MLT1C LTR MaLR -25 442 300 5 794 465 230 187 13 chr5 27394937 27395087 -125142172 + L1MA4 LINE L1 5717 5892 -408 5 794 635 250 113 15 chr5 27396298 27396493 -125140766 - ID_B1 SINE B4 -8 216 3 5 794 398 269 92 24 chr5 27397549 27397713 -125139546 + MER3 DNA MER1_type 29 203 -6 5 794 555 16 0 0 chr5 27398534 27398598 -125138661 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 794 519 31 0 0 chr5 27398598 27398662 -125138597 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 794 588 158 29 6 chr5 27399307 27399479 -125137780 + (CA)n Simple_repeat Simple_repeat 2 177 0 5 794 379 208 16 0 chr5 27399498 27399623 -125137636 + (CA)n Simple_repeat Simple_repeat 1 127 0 5 794 231 61 0 0 chr5 27399652 27399685 -125137574 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 5 794 647 137 210 25 chr5 27400216 27400342 -125136917 + B2_Mm2 SINE B2 2 134 -61 5 794 423 0 0 0 chr5 27400342 27400389 -125136870 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 794 647 137 210 25 chr5 27400389 27400419 -125136840 + B2_Mm2 SINE B2 135 186 -9 5 794 734 215 40 0 chr5 27401044 27401193 -125136066 - B3A SINE B2 -42 156 2 5 794 1034 170 125 21 chr5 27402705 27402897 -125134362 - B3 SINE B2 -3 213 2 5 794 237 303 120 10 chr5 27403724 27403824 -125133435 - MER20B DNA MER1_type -649 134 24 5 794 480 271 137 47 chr5 27406315 27406636 -125130623 - ORR1D2 LTR MaLR 0 370 21 6 794 701 332 30 50 chr5 27407426 27407724 -125129535 + B4A SINE B4 1 292 0 6 794 198 0 0 0 chr5 27407751 27407773 -125129486 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 794 1601 300 35 12 chr5 27407826 27408396 -125128863 + L1MA5 LINE L1 5367 5949 -351 6 794 1769 218 35 0 chr5 27408414 27408814 -125128445 + MTD LTR MaLR 1 405 -14 6 794 463 226 11 0 chr5 27409259 27409352 -125127907 - ID_B1 SINE B4 -8 216 123 6 794 675 299 25 32 chr5 27409763 27410046 -125127213 + B4A SINE B4 4 284 -8 6 794 599 0 14 0 chr5 27410112 27410183 -125127076 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 794 18131 82 19 2 chr5 27410998 27414354 -125122905 - L1VL4 LINE L1 -147 3412 1 6 794 414 101 0 0 chr5 27415024 27415093 -125122166 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 794 21 36 0 0 chr5 27415181 27415209 -125122050 + AT_rich Low_complexity Low_complexity 1 28 0 6 794 274 340 25 0 chr5 27415316 27415475 -125121784 - L1MC4a LINE L1 -230 7652 7490 6 794 396 0 0 0 chr5 27415594 27415638 -125121621 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 794 740 275 25 86 chr5 27416972 27417369 -125119890 - ORR1E LTR MaLR -8 362 11 6 794 459 0 0 0 chr5 27418181 27418232 -125119027 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 794 959 219 30 5 chr5 27418272 27418474 -125118785 - B3 SINE B2 -9 207 1 6 794 711 267 35 52 chr5 27418474 27418702 -125118557 - B4 SINE B4 -65 227 4 6 794 1435 28 16 11 chr5 27418749 27418931 -125118328 - L1Md_F3 LINE L1 -1 6583 6401 6 794 217 268 139 40 chr5 27420054 27420155 -125117104 - L2a LINE L2 -12 3414 3304 6 794 574 169 96 90 chr5 27420209 27420288 -125116971 + ID SINE ID 1 80 -144 6 794 326 235 11 66 chr5 27420288 27420379 -125116880 + PB1D10 SINE Alu 3 88 -29 6 794 435 260 10 0 chr5 27420383 27420487 -125116772 + B3A SINE B2 27 131 -67 6 794 569 26 39 0 chr5 27420513 27420590 -125116669 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 6 794 2070 224 73 93 chr5 27420966 27421586 -125115673 - RMER19C LTR ERVK -4 607 1 6 794 495 0 0 0 chr5 27422959 27423014 -125114245 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 6 794 1737 174 41 19 chr5 27424158 27424521 -125112738 + ORR1B1 LTR MaLR 24 394 0 6 794 556 334 47 9 chr5 27424556 27424900 -125112359 - Lx8 LINE L1 -129 7344 6988 6 794 294 174 34 34 chr5 27425063 27425152 -125112107 + CT-rich Low_complexity Low_complexity 5 93 0 6 794 474 349 28 11 chr5 27425153 27425330 -125111929 + polypyrimidine Low_complexity Low_complexity 1 180 0 6 794 213 368 0 0 chr5 27425338 27425504 -125111755 + T-rich Low_complexity Low_complexity 1 166 0 6 794 760 156 0 47 chr5 27425557 27425792 -125111467 + CT-rich Low_complexity Low_complexity 1 224 0 6 794 234 0 0 0 chr5 27426568 27426594 -125110665 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 6 794 435 317 98 0 chr5 27427682 27427906 -125109353 + L1M2 LINE L1 5484 5729 -562 6 794 854 289 130 63 chr5 27427946 27428328 -125108931 + MTD LTR MaLR 1 407 0 6 794 567 151 46 11 chr5 27428709 27428883 -125108376 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 794 849 205 14 2 chr5 27428994 27429177 -125108082 - B3A SINE B2 -30 186 2 6 794 3168 40 0 0 chr5 27429372 27429748 -125107511 - L1Md_A LINE L1 0 6582 6207 6 794 23 0 0 0 chr5 27430996 27431019 -125106240 + AT_rich Low_complexity Low_complexity 1 23 0 6 794 196 398 12 6 chr5 27431389 27431551 -125105708 + MIRb SINE MIR 106 268 0 6 794 595 258 119 21 chr5 27431963 27432157 -125105102 + B3 SINE B2 1 213 -3 6 794 341 308 78 29 chr5 27432691 27432895 -125104364 - L1MB3 LINE L1 -159 6024 5811 6 794 883 258 76 12 chr5 27433012 27433263 -125103996 - B4A SINE B4 -23 269 3 6 794 406 342 155 16 chr5 27433465 27433911 -125103348 - L1M2 LINE L1 -772 5371 4864 6 794 350 219 60 24 chr5 27435384 27435468 -125101791 + ORR1E LTR MaLR 1 87 -272 6 794 754 230 20 0 chr5 27435521 27435673 -125101586 - B3A SINE B2 -41 157 3 6 794 276 30 0 0 chr5 27436880 27436913 -125100346 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 6 794 284 284 88 97 chr5 27436980 27437206 -125100053 - B4A SINE B4 0 292 69 6 794 605 184 25 50 chr5 27437229 27437389 -125099870 - RMER1B Other Other 0 1066 911 6 794 826 78 0 58 chr5 27437963 27438154 -125099105 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 794 352 255 17 11 chr5 27438971 27439138 -125098121 + ID_B1 SINE B4 6 221 -3 6 794 1320 263 84 16 chr5 27439268 27439782 -125097477 - L1M4 LINE L1 -2934 3212 2664 6 794 1873 249 66 49 chr5 27440164 27440752 -125096507 + RMER20B LTR ERVK 1 598 -29 6 794 311 296 0 12 chr5 27440754 27440836 -125096423 + RMER20B LTR ERVK 525 605 -22 6 794 5972 50 1 4 chr5 27442377 27443114 -125094145 - L1Md_F2 LINE L1 -1 6581 5847 6 794 1044 321 44 6 chr5 27443299 27443659 -125093600 - MTEa LTR MaLR -5 374 1 6 794 574 205 32 112 chr5 27444134 27444189 -125093070 - B3A SINE B2 0 198 153 6 794 1199 258 85 15 chr5 27444189 27444531 -125092728 + ORR1D2 LTR MaLR 1 366 -4 6 794 574 205 32 112 chr5 27444531 27444662 -125092597 - B3A SINE B2 -46 152 27 6 794 405 324 36 7 chr5 27444668 27444808 -125092451 - RSINE1 SINE B4 -2 163 20 6 794 480 18 0 0 chr5 27445875 27445932 -125091327 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 794 738 244 127 0 chr5 27447698 27447895 -125089364 - ID_B1 SINE B4 -2 222 1 6 794 484 297 100 66 chr5 27450400 27450811 -125086448 + Lx8 LINE L1 7048 7472 -1 6 794 342 0 0 0 chr5 27453185 27453223 -125084036 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 794 378 0 0 0 chr5 27453223 27453264 -125083995 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 794 423 158 0 27 chr5 27453264 27453375 -125083884 + GA-rich Low_complexity Low_complexity 3 110 0 6 794 545 259 6 37 chr5 27453547 27453711 -125083548 - B3A SINE B2 -1 197 39 6 794 1057 333 59 20 chr5 27454328 27454784 -125082475 - MLT2B3 LTR ERVL -46 508 35 6 794 486 56 83 0 chr5 27457060 27457168 -125080091 + (GGGTG)n Simple_repeat Simple_repeat 4 120 0 6 794 2646 118 35 55 chr5 27457852 27458311 -125078948 - RLTR11B LTR ERVK 0 453 4 6 794 295 359 103 60 chr5 27458357 27458525 -125078734 + MTEa LTR MaLR 4 179 -200 6 794 1227 263 48 22 chr5 27458525 27458883 -125078376 + ORR1D2 LTR MaLR 1 367 -3 6 794 295 320 171 37 chr5 27458883 27459059 -125078200 + MTEa LTR MaLR 180 379 0 6 794 232 343 0 0 chr5 27459592 27459662 -125077597 - L1M5 LINE L1 -521 5603 5534 6 794 568 196 11 11 chr5 27460537 27460729 -125076530 + CT-rich Low_complexity Low_complexity 1 192 0 6 794 21 0 0 0 chr5 27460850 27460871 -125076388 + AT_rich Low_complexity Low_complexity 1 21 0 6 794 642 286 65 5 chr5 27462508 27462711 -125074548 + B4A SINE B4 3 216 -76 6 794 204 358 9 0 chr5 27462740 27462849 -125074410 + (CA)n Simple_repeat Simple_repeat 1 110 0 6 794 225 278 28 0 chr5 27462742 27462814 -125074445 + (CATG)n Simple_repeat Simple_repeat 3 76 0 6 794 261 0 0 0 chr5 27462873 27462902 -125074357 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 794 1279 108 27 5 chr5 27465175 27465362 -125071897 + B2_Mm2 SINE B2 1 191 -4 6 794 1057 83 0 46 chr5 27465370 27465514 -125071745 + B1_Mus1 SINE Alu 2 139 -9 6 794 288 70 0 0 chr5 27465514 27465557 -125071702 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 6 794 210 158 0 0 chr5 27465982 27466020 -125071239 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 6 794 531 279 38 25 chr5 27466020 27466178 -125071081 - RSINE1 SINE B4 -3 162 3 6 794 306 125 0 0 chr5 27466308 27466356 -125070903 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 794 252 237 92 0 chr5 27466378 27466454 -125070805 - RSINE1 SINE B4 -37 128 46 6 794 333 308 177 0 chr5 27466850 27467048 -125070211 - MER2 DNA MER2_type -63 282 50 6 794 1392 236 40 40 chr5 27467245 27467650 -125069609 + MTD LTR MaLR 1 405 -14 6 794 462 279 116 30 chr5 27468835 27469138 -125068121 - L1MB8 LINE L1 -2 6176 5848 6 794 630 225 75 66 chr5 27469284 27469512 -125067747 - Lx7 LINE L1 -272 7424 7195 6 794 1577 247 37 56 chr5 27469517 27470069 -125067190 - RMER19C LTR ERVK -2 609 4 6 794 2891 271 91 18 chr5 27470071 27470972 -125066287 - Lx7 LINE L1 -494 7202 6236 6 794 250 80 74 74 chr5 27470979 27471033 -125066226 - L1M5 LINE L1 -291 5888 5835 6 794 402 232 10 10 chr5 27471049 27471149 -125066110 - PB1D10 SINE Alu -9 108 9 6 794 392 267 99 0 chr5 27471877 27472008 -125065251 - RMER15 LTR ERVL -14 561 418 6 794 790 287 91 46 chr5 27472543 27472920 -125064339 + MTD LTR MaLR 18 401 -18 6 794 890 248 61 4 chr5 27475255 27475486 -125061773 + RMER15 LTR ERVL 220 463 -112 6 794 951 241 182 7 chr5 27475520 27475817 -125061442 - ORR1D1 LTR MaLR -19 355 7 6 794 2508 191 18 4 chr5 27475953 27476410 -125060849 - Lx5 LINE L1 -331 6719 6257 6 794 1359 192 19 4 chr5 27476411 27476678 -125060581 + Lx5 LINE L1 6780 7050 0 6 794 587 261 8 8 chr5 27477271 27477402 -125059857 + RSINE1 SINE B4 2 132 -33 6 794 26 0 0 0 chr5 27477404 27477430 -125059829 + AT_rich Low_complexity Low_complexity 1 26 0 6 794 2815 55 93 3 chr5 27478348 27478533 -125058726 - MTB LTR MaLR 0 400 216 6 794 1103 114 0 6 chr5 27478533 27478709 -125058550 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 6 794 2815 55 93 3 chr5 27478709 27478890 -125058369 - MTB LTR MaLR -185 215 2 6 794 288 0 0 0 chr5 27479263 27479295 -125057964 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 794 245 279 0 68 chr5 27479302 27479375 -125057884 - ID4 SINE ID -14 69 2 7 794 1064 251 108 20 chr5 27479437 27479779 -125057480 - MTEa LTR MaLR -2 377 6 7 794 382 289 51 23 chr5 27480473 27480650 -125056609 + MLT1E2 LTR MaLR 415 596 -31 7 794 402 289 74 92 chr5 27480877 27481094 -125056165 + B4A SINE B4 9 221 -71 7 794 324 0 0 0 chr5 27481206 27481242 -125056017 + (TC)n Simple_repeat Simple_repeat 2 37 0 7 794 303 28 0 0 chr5 27481242 27481277 -125055982 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 794 503 215 99 46 chr5 27481362 27481513 -125055746 - MTE2a LTR MaLR -3 376 218 7 794 430 328 33 16 chr5 27481682 27481865 -125055394 - MTE2a LTR MaLR -226 193 8 7 794 351 0 0 0 chr5 27486032 27486071 -125051188 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 794 375 23 0 0 chr5 27486071 27486114 -125051145 + (GA)n Simple_repeat Simple_repeat 1 44 0 7 794 348 315 55 18 chr5 27489395 27489421 -125047838 - PB1D7 SINE Alu -6 114 89 7 794 2484 125 51 3 chr5 27489421 27489813 -125047446 - Lx4A LINE L1 0 7058 6648 7 794 379 257 37 0 chr5 27489813 27489896 -125047363 - PB1D10 SINE Alu -32 88 1 7 794 229 232 13 104 chr5 27489839 27489916 -125047343 - ID_B1 SINE B4 -83 141 72 7 794 1238 262 92 26 chr5 27491558 27492013 -125045246 - RMER5 LTR ERV1 0 534 50 7 794 228 67 0 0 chr5 27493578 27493608 -125043651 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 7 794 1063 283 66 18 chr5 27493676 27493831 -125043428 - MTEa LTR MaLR -26 353 197 7 794 231 36 0 0 chr5 27493831 27493859 -125043400 + (CTG)n Simple_repeat Simple_repeat 2 29 0 7 794 1063 283 66 18 chr5 27493859 27494038 -125043221 - MTEa LTR MaLR -183 196 4 7 794 266 0 29 0 chr5 27494060 27494094 -125043165 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 7 794 688 219 109 45 chr5 27496380 27496581 -125040678 - B3 SINE B2 -2 214 1 7 794 916 267 38 23 chr5 27497015 27497276 -125039983 + B4 SINE B4 8 272 -20 7 794 212 154 0 0 chr5 27497509 27497548 -125039711 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 7 794 457 165 47 0 chr5 27497607 27497692 -125039567 - B3 SINE B2 -127 89 1 7 794 288 134 118 35 chr5 27497694 27497779 -125039480 - Lx9 LINE L1 -1 7643 7552 7 794 1601 60 5 5 chr5 27497968 27498187 -125039072 - MTB LTR MaLR 0 400 182 7 794 220 27 26 26 chr5 27498187 27498225 -125039034 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 7 794 962 47 8 0 chr5 27498226 27498353 -125038906 - B1_Mm SINE Alu 0 147 20 7 794 1355 86 10 5 chr5 27498353 27498551 -125038708 - MTB LTR MaLR -194 202 4 7 794 288 0 0 0 chr5 27501016 27501048 -125036211 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 794 234 0 0 0 chr5 27501048 27501073 -125036186 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 794 566 214 100 48 chr5 27501101 27501279 -125035980 - B3A SINE B2 0 216 38 3 794 264 30 0 0 chr5 27501704 27501737 -125035522 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 794 970 261 21 0 chr5 27502004 27502242 -125035017 - MTEa LTR MaLR -4 375 133 5 794 224 170 19 0 chr5 27502444 27502497 -125034762 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 794 610 273 46 10 chr5 27502536 27502732 -125034527 - B3 SINE B2 -13 203 1 7 794 492 291 0 0 chr5 27504003 27504120 -125033139 - B1F SINE Alu -31 118 2 8 794 2114 258 71 0 chr5 27504567 27505091 -125032168 - Lx5 LINE L1 0 7050 6490 9 794 252 250 0 0 chr5 27505367 27505423 -125031836 - RMER15 LTR ERVL -113 462 407 1 794 2673 273 73 47 chr5 27505425 27506333 -125030926 - Lx8 LINE L1 -205 7268 6338 1 794 277 252 74 50 chr5 27506578 27506699 -125030560 - L1MD1 LINE L1 -228 6014 5891 1 794 586 269 93 74 chr5 27507925 27508194 -125029065 - B4A SINE B4 -8 284 11 1 794 363 121 0 0 chr5 27508865 27508923 -125028336 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 794 409 216 61 61 chr5 27508926 27509074 -125028185 - B3A SINE B2 -50 148 1 1 794 821 190 162 70 chr5 27510605 27510877 -125026382 - MTE2a LTR MaLR 0 379 83 1 794 489 34 0 0 chr5 27510877 27510936 -125026323 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 794 356 271 152 111 chr5 27510936 27510969 -125026290 - MTE2a LTR MaLR -303 116 102 1 794 243 0 0 0 chr5 27510969 27510996 -125026263 + (CAGAGA)n Simple_repeat Simple_repeat 5 31 0 1 794 356 271 152 111 chr5 27510996 27511092 -125026167 - MTE2a LTR MaLR -318 101 1 1 794 260 260 27 0 chr5 27511293 27511366 -125025893 + ID4 SINE ID 6 80 -3 1 794 501 84 0 0 chr5 27511877 27511948 -125025311 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 794 393 176 0 0 chr5 27511967 27512041 -125025218 + GA-rich Low_complexity Low_complexity 1 74 0 2 794 480 18 0 0 chr5 27514896 27514953 -125022306 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 794 495 228 212 7 chr5 27515809 27515955 -125021304 + MTD LTR MaLR 13 188 -231 2 794 531 0 0 0 chr5 27516971 27517030 -125020229 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 794 216 97 0 0 chr5 27517030 27517060 -125020199 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 794 894 281 62 11 chr5 27517093 27517366 -125019893 - B4 SINE B4 -4 288 2 2 794 366 318 15 15 chr5 27518777 27518908 -125018351 - B4A SINE B4 -56 236 106 2 794 810 248 224 3 chr5 27518921 27519224 -125018035 + MTD LTR MaLR 35 404 -15 2 794 1037 284 17 83 chr5 27519598 27519948 -125017311 - MTEa LTR MaLR -52 327 1 2 794 760 266 88 72 chr5 27520068 27520444 -125016815 - MTD LTR MaLR -14 405 24 3 794 464 248 8 30 chr5 27520671 27520818 -125016441 - MTE2b LTR MaLR -1 378 225 3 794 318 50 0 0 chr5 27521562 27521602 -125015657 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 794 825 263 167 25 chr5 27522066 27522390 -125014869 - MTE2b LTR MaLR -1 378 9 3 794 297 0 0 0 chr5 27523635 27523668 -125013591 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 794 405 0 0 0 chr5 27523668 27523712 -125013547 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 794 411 276 43 70 chr5 27523743 27523930 -125013329 + L1MB1 LINE L1 5587 5768 -421 3 794 420 169 0 0 chr5 27523930 27524007 -125013252 + (TGGA)n Simple_repeat Simple_repeat 2 78 0 3 794 482 304 76 8 chr5 27524007 27524256 -125013003 + L1MB1 LINE L1 5754 6019 -149 3 795 340 200 13 26 chr5 27525456 27525533 -125011726 - Lx8 LINE L1 -247 7226 7151 3 795 459 0 0 0 chr5 27527082 27527133 -125010126 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 795 237 266 137 0 chr5 27527991 27528115 -125009144 - RCHARR1 DNA MER1_type -13 961 821 4 795 647 234 96 0 chr5 27528136 27528324 -125008935 - MTEa LTR MaLR 0 379 174 4 795 779 268 19 5 chr5 27528325 27528535 -125008724 - MTEa LTR MaLR -113 266 54 4 795 1719 233 41 23 chr5 27528547 27529031 -125008228 - RCHARR1 DNA MER1_type -195 779 287 4 795 576 301 57 0 chr5 27529047 27529276 -125007983 - RCHARR1 DNA MER1_type -729 245 4 4 795 362 270 120 14 chr5 27529278 27529457 -125007802 + MLT1C LTR MaLR 235 395 -72 4 795 365 289 107 23 chr5 27530712 27530928 -125006331 - L1MB8 LINE L1 -19 6159 5926 4 795 418 155 28 14 chr5 27531945 27532089 -125005170 + CT-rich Low_complexity Low_complexity 1 146 0 4 795 675 310 20 0 chr5 27534318 27534515 -125002744 + Lx8 LINE L1 7112 7312 -161 4 795 426 296 17 0 chr5 27534990 27535105 -125002154 + RSINE1 SINE B4 5 121 -44 4 795 21 57 0 0 chr5 27535775 27535810 -125001449 + AT_rich Low_complexity Low_complexity 1 35 0 4 795 223 209 266 32 chr5 27536015 27536109 -125001150 + B3A SINE B2 1 116 -82 4 795 516 156 0 0 chr5 27536109 27536199 -125001060 + (CCCCAG)n Simple_repeat Simple_repeat 1 90 0 5 795 26 30 0 0 chr5 27536287 27536320 -125000939 + AT_rich Low_complexity Low_complexity 1 33 0 5 795 961 200 23 37 chr5 27536813 27537031 -125000228 + B3 SINE B2 2 216 0 5 795 375 185 0 0 chr5 27537055 27537120 -125000139 + B1_Mur4 SINE Alu 1 65 -85 5 795 224 214 0 28 chr5 27537157 27537229 -125000030 + CT-rich Low_complexity Low_complexity 3 72 0 5 795 353 284 20 0 chr5 27537602 27537704 -124999555 - ID_B1 SINE B4 -34 190 87 5 795 748 197 88 0 chr5 27537990 27538137 -124999122 - B3 SINE B2 -56 160 1 5 795 244 306 64 18 chr5 27538187 27538297 -124998962 - MTEb LTR MaLR 0 379 265 5 795 311 331 36 7 chr5 27539441 27539578 -124997681 + B1F SINE Alu 1 141 -8 5 795 419 35 18 0 chr5 27540298 27540355 -124996904 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 795 426 323 0 0 chr5 27541225 27541349 -124995910 + ID_B1 SINE B4 101 224 0 6 795 3224 183 98 31 chr5 27541372 27542043 -124995216 - RMER6D LTR ERVK -4 716 1 6 795 341 221 10 0 chr5 27542259 27542363 -124994896 + (TA)n Simple_repeat Simple_repeat 1 105 0 6 795 1640 170 113 18 chr5 27543998 27544333 -124992926 - ORR1B2 LTR MaLR 0 367 1 6 795 522 294 132 41 chr5 27544349 27544615 -124992644 - B4 SINE B4 0 292 3 6 795 565 189 0 28 chr5 27544753 27544862 -124992397 + B1_Mus1 SINE Alu 4 109 -39 6 795 278 243 8 119 chr5 27544862 27544879 -124992380 + MT2B LTR ERVL 168 279 -322 6 795 231 217 125 42 chr5 27545321 27545393 -124991866 - B4 SINE B4 -4 288 211 6 795 418 317 42 28 chr5 27545463 27545606 -124991653 - B4 SINE B4 -60 232 88 6 795 545 276 67 45 chr5 27547346 27547625 -124989634 + B4A SINE B4 2 278 -14 6 795 310 204 20 0 chr5 27547647 27547745 -124989514 + (CA)n Simple_repeat Simple_repeat 1 100 0 6 795 508 235 50 22 chr5 27548053 27548192 -124989067 + ID_B1 SINE B4 66 208 -16 7 795 559 117 10 10 chr5 27548192 27548296 -124988963 + (GGAA)n Simple_repeat Simple_repeat 3 106 0 7 795 481 276 249 0 chr5 27548469 27548730 -124988529 + MLT1B LTR MaLR 57 382 -8 7 795 23 0 0 0 chr5 27550189 27550212 -124987047 + AT_rich Low_complexity Low_complexity 1 23 0 7 795 431 253 12 87 chr5 27550279 27550452 -124986807 - HAL1-2a_MD LINE L1 -519 2505 2346 7 795 323 344 39 0 chr5 27550458 27550612 -124986647 - HAL1-2a_MD LINE L1 -535 2489 2330 7 795 815 301 56 40 chr5 27550673 27550977 -124986282 - MTE2a LTR MaLR -13 366 58 7 795 3262 245 71 95 chr5 27551318 27551741 -124985518 - L1Md_A LINE L1 -1 6996 6554 7 795 180 0 0 0 chr5 27551741 27551761 -124985498 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 795 41595 13 0 6 chr5 27551761 27557966 -124979293 - L1Md_A LINE L1 -1 6581 445 7 795 4783 106 7 0 chr5 27557961 27558814 -124978445 - L1_Mus3 LINE L1 -408 6230 5367 7 795 611 274 120 112 chr5 27558911 27559141 -124978118 - MLT1A1 LTR MaLR -22 386 156 8 795 2826 33 15 0 chr5 27559141 27559476 -124977783 - L1_Mus1 LINE L1 0 6567 6228 8 795 611 274 120 112 chr5 27559476 27559628 -124977631 - MLT1A1 LTR MaLR -253 155 1 8 795 458 263 102 0 chr5 27560002 27560120 -124977139 + B3 SINE B2 87 216 0 8 795 243 306 0 0 chr5 27560415 27560477 -124976782 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 795 361 244 12 0 chr5 27562408 27562494 -124974765 - ORR1D2 LTR MaLR 0 379 293 8 795 306 287 82 0 chr5 27563144 27563266 -124973993 + L1MA6 LINE L1 6124 6255 -45 8 795 2043 144 73 3 chr5 27563889 27564229 -124973030 + ORR1B2 LTR MaLR 1 364 -3 8 795 236 320 38 57 chr5 27564474 27564580 -124972679 - MIRb SINE MIR -139 129 26 8 795 1030 255 22 162 chr5 27564819 27565189 -124972070 - ORR1D2 LTR MaLR -52 318 1 8 795 1404 329 42 21 chr5 27565192 27565760 -124971499 + MER82 DNA MER2_type 68 647 -6 8 795 216 0 0 0 chr5 27565815 27565839 -124971420 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 795 226 73 0 47 chr5 27565892 27565935 -124971324 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 9 795 272 327 0 0 chr5 27566041 27566145 -124971114 + (CA)n Simple_repeat Simple_repeat 1 104 0 9 795 533 270 117 0 chr5 27566616 27566779 -124970480 + B3A SINE B2 1 182 -16 9 795 956 284 122 0 chr5 27567068 27567322 -124969937 + MTD LTR MaLR 50 334 -85 9 795 669 219 0 0 chr5 27567322 27567482 -124969777 + GA-rich Low_complexity Low_complexity 1 160 0 9 795 391 176 0 0 chr5 27567482 27567550 -124969709 + MTD LTR MaLR 344 411 -8 9 795 270 0 0 0 chr5 27567717 27567747 -124969512 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 795 468 0 0 0 chr5 27567747 27567798 -124969461 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 795 1408 210 228 47 chr5 27570956 27571420 -124965839 - RMER13B LTR ERVK -4 904 357 9 795 1323 69 0 0 chr5 27571720 27571895 -124965364 + (GAAA)n Simple_repeat Simple_repeat 3 177 0 9 795 398 267 29 38 chr5 27571994 27572099 -124965160 - B4A SINE B4 -182 110 7 9 795 226 161 0 159 chr5 27572552 27572722 -124964537 + GA-rich Low_complexity Low_complexity 4 146 0 1 795 329 219 41 0 chr5 27573098 27573171 -124964088 - ORR1E LTR MaLR -5 374 299 1 795 717 292 81 15 chr5 27573196 27573467 -124963792 - B4A SINE B4 -3 289 1 1 795 644 315 52 88 chr5 27573470 27573776 -124963483 - ORR1E LTR MaLR -60 299 5 1 795 188 271 131 30 chr5 27573857 27573956 -124963303 + MIRc SINE MIR 18 126 -142 1 795 321 270 67 0 chr5 27574160 27574249 -124963010 + ORR1E LTR MaLR 21 115 -244 1 795 2580 226 63 102 chr5 27576359 27577347 -124959912 - RMER17B LTR ERVK -4 904 1 1 795 5667 74 12 8 chr5 27579655 27580420 -124956839 + RLTR22_Mus LTR ERVK 1 768 -1040 1 795 398 293 40 85 chr5 27580659 27580883 -124956376 + RMER12 LTR ERVK 1101 1314 -8 1 795 7835 79 15 1 chr5 27583021 27584166 -124953093 - L1_Mus3 LINE L1 -13 6625 5465 1 795 501 318 38 3 chr5 27586027 27586224 -124951035 - L1MB1 LINE L1 -134 6178 5980 1 795 435 19 0 0 chr5 27588913 27588965 -124948294 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 795 460 111 25 0 chr5 27588966 27589047 -124948212 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 795 504 48 0 0 chr5 27590821 27590884 -124946375 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 795 435 306 9 0 chr5 27590952 27591063 -124946196 + PB1D7 SINE Alu 1 112 -8 1 795 291 146 0 0 chr5 27591746 27591801 -124945458 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 795 529 274 57 78 chr5 27591921 27592151 -124945108 - B4A SINE B4 -65 227 3 1 795 745 243 10 36 chr5 27593829 27594021 -124943238 - RMER13B LTR ERVK -4 904 718 1 795 2025 228 86 144 chr5 27594024 27594885 -124942374 - RMER17B LTR ERVK -147 811 1 1 795 1271 252 118 3 chr5 27595075 27595389 -124941870 - MTE2b LTR MaLR -11 368 19 1 795 255 295 16 0 chr5 27597505 27597566 -124939693 - B1F SINE Alu -51 98 37 1 795 363 44 0 0 chr5 27597677 27597722 -124939537 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 795 196 320 119 55 chr5 27598481 27598590 -124938669 - MIRc SINE MIR -127 141 26 1 795 598 294 45 7 chr5 27600839 27600993 -124936266 - RSINE1 SINE B4 -2 163 4 1 795 584 247 206 33 chr5 27601003 27601046 -124936213 - B3 SINE B2 -4 212 165 1 795 225 0 0 0 chr5 27601046 27601071 -124936188 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 795 462 36 0 0 chr5 27601071 27601126 -124936133 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 795 584 247 206 33 chr5 27601126 27601261 -124935998 - B3 SINE B2 -52 164 3 1 795 432 174 0 0 chr5 27601923 27602044 -124935215 + (TG)n Simple_repeat Simple_repeat 2 122 0 1 795 963 300 22 15 chr5 27602082 27602353 -124934906 - B4 SINE B4 -19 273 1 1 795 399 56 0 0 chr5 27602363 27602417 -124934842 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1 795 261 276 45 71 chr5 27603772 27604041 -124933218 + RMER17A LTR ERVK 232 493 -258 1 795 413 323 51 6 chr5 27604347 27604503 -124932756 + RSINE1 SINE B4 3 165 0 1 795 670 286 39 29 chr5 27606949 27606989 -124930270 + ID SINE ID 2 41 -183 1 795 2429 158 7 10 chr5 27606989 27607397 -124929862 + MTB_Mm LTR MaLR 1 407 0 1 795 670 286 39 29 chr5 27607397 27607561 -124929698 + ID_B1 SINE B4 42 208 -16 1 795 226 314 120 111 chr5 27607733 27607941 -124929318 - MLT1A1 LTR MaLR -198 210 1 1 795 610 273 7 27 chr5 27608408 27608555 -124928704 + B1F2 SINE Alu 1 144 -5 1 795 517 327 97 22 chr5 27609623 27609901 -124927358 + Lx9 LINE L1 7117 7415 -229 1 795 351 333 0 27 chr5 27609902 27610050 -124927209 + (TATATG)n Simple_repeat Simple_repeat 5 148 0 1 795 422 271 11 0 chr5 27610828 27611005 -124926254 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 1 795 528 93 0 0 chr5 27612245 27612320 -124924939 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 1 795 243 328 32 32 chr5 27613820 27613943 -124923316 - MTE2b LTR MaLR -17 362 240 1 795 581 286 29 0 chr5 27614096 27614236 -124923023 - RSINE1 SINE B4 -19 146 3 1 795 256 254 221 21 chr5 27616342 27616487 -124920772 - MTE2a LTR MaLR 0 379 206 1 795 405 0 0 0 chr5 27617358 27617403 -124919856 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 795 1205 176 18 26 chr5 27618366 27618593 -124918666 - URR1B DNA MER1_type 0 225 1 1 795 1319 271 81 21 chr5 27618671 27619192 -124918067 - Lx8 LINE L1 0 7473 6922 1 795 308 188 16 0 chr5 27619657 27619721 -124917538 - MT2A LTR ERVL -391 142 78 1 795 557 261 35 14 chr5 27619721 27619865 -124917394 + B1_Mus2 SINE Alu 1 147 0 1 795 219 143 27 54 chr5 27619868 27619942 -124917317 + (CAGAGA)n Simple_repeat Simple_repeat 2 73 0 1 795 346 134 134 0 chr5 27619945 27620012 -124917247 - MT2A LTR ERVL -457 76 1 1 795 339 247 86 46 chr5 27621145 27621320 -124915939 + Lx6 LINE L1 5603 5783 -514 1 795 523 290 58 34 chr5 27621443 27621650 -124915609 + B3 SINE B2 5 216 0 1 795 289 302 32 0 chr5 27621650 27621774 -124915485 + Lx3_Mus LINE L1 5774 5906 -1567 1 795 389 274 42 0 chr5 27621977 27622072 -124915187 + PB1D7 SINE Alu 3 101 -19 1 795 36213 34 0 0 chr5 27622680 27628107 -124909152 + L1Md_T LINE L1 66 5589 -297 1 795 9119 8 0 0 chr5 27628107 27629135 -124908124 + L1Md_T LINE L1 5590 6585 0 1 795 23 68 0 0 chr5 27629346 27629390 -124907869 + AT_rich Low_complexity Low_complexity 1 44 0 1 795 325 109 0 35 chr5 27629412 27629469 -124907790 - B2_Mm2 SINE B2 -94 101 47 1 795 1075 108 12 0 chr5 27629540 27629706 -124907553 - B2_Mm1t SINE B2 -23 170 3 1 795 427 281 32 7 chr5 27630061 27630215 -124907044 - RLTR42-int LTR ERVK -4206 1316 1159 1 795 537 302 22 39 chr5 27631100 27631279 -124905980 + B4A SINE B4 13 188 -104 1 795 1243 104 0 10 chr5 27631281 27631475 -124905784 + MTB LTR MaLR 1 192 -215 1 795 3471 80 19 2 chr5 27631475 27631953 -124905306 + L1_Mus3 LINE L1 6151 6636 -2 1 795 1143 90 7 0 chr5 27631960 27632105 -124905154 + B1_Mus2 SINE Alu 2 147 0 1 795 180 97 0 0 chr5 27632105 27632136 -124905123 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 1 795 683 233 0 6 chr5 27632144 27632321 -124904938 + GA-rich Low_complexity Low_complexity 2 177 0 1 795 1664 46 0 9 chr5 27632321 27632541 -124904718 + MTB LTR MaLR 183 400 0 1 795 227 317 60 24 chr5 27632544 27632628 -124904631 + B4 SINE B4 188 274 -18 1 795 5524 79 1 10 chr5 27633911 27634642 -124902617 + L1_Mus1 LINE L1 5843 6567 0 1 795 1188 186 34 5 chr5 27634876 27635081 -124902178 - B3 SINE B2 -5 211 1 1 795 360 373 0 25 chr5 27637701 27637822 -124899437 + B4A SINE B4 1 118 -174 1 795 753 205 74 12 chr5 27637855 27638018 -124899241 + Lx4B LINE L1 6869 7041 -17 1 795 397 264 0 0 chr5 27638062 27638149 -124899110 + B4A SINE B4 201 287 -5 1 795 372 310 151 5 chr5 27638532 27638717 -124898542 - MLT1A LTR MaLR -44 330 119 1 795 312 322 65 14 chr5 27640493 27640837 -124896422 - L1_Rod LINE L1 -3640 2240 1881 1 795 379 206 31 10 chr5 27641423 27641521 -124895738 + ORR1D2 LTR MaLR 1 100 -270 1 795 231 36 0 0 chr5 27642450 27642478 -124894781 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 795 603 74 0 0 chr5 27642478 27642559 -124894700 + (TATATG)n Simple_repeat Simple_repeat 5 85 0 1 795 26 50 0 0 chr5 27642571 27642611 -124894648 + AT_rich Low_complexity Low_complexity 1 40 0 1 795 1852 280 83 48 chr5 27645055 27645790 -124891469 - Lx8 LINE L1 -1 7472 6712 1 795 549 255 81 0 chr5 27645816 27645965 -124891294 + B3A SINE B2 2 162 -36 1 795 630 26 0 0 chr5 27646945 27647021 -124890238 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 795 260 284 0 58 chr5 27647024 27647110 -124890149 - RSINE1 SINE B4 -6 159 79 1 795 266 326 32 11 chr5 27647238 27647331 -124889928 - B4 SINE B4 -190 102 8 1 795 375 121 0 0 chr5 27648261 27648319 -124888940 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 795 188 61 0 57 chr5 27653909 27653944 -124883315 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 1 795 277 318 17 60 chr5 27654368 27654485 -124882774 + MIRb SINE MIR 18 129 -139 1 795 214 257 27 13 chr5 27654627 27654702 -124882557 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 795 289 286 6 6 chr5 27654703 27654879 -124882380 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 1 795 746 247 52 113 chr5 27654880 27655190 -124882069 - B4 SINE B4 0 292 2 1 795 354 312 116 52 chr5 27655857 27656107 -124881152 + MLT1A LTR MaLR 14 279 -95 1 796 555 309 80 28 chr5 27656725 27656975 -124880284 + B4A SINE B4 3 265 -27 1 796 234 217 32 108 chr5 27658486 27658579 -124878680 - MTEb LTR MaLR 0 379 294 1 796 234 215 52 31 chr5 27658929 27659025 -124878234 - MLT1A1 LTR MaLR -275 133 36 1 796 390 42 0 0 chr5 27659337 27659385 -124877874 + (CATA)n Simple_repeat Simple_repeat 3 50 0 1 796 212 77 26 0 chr5 27659984 27660023 -124877236 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 796 438 154 0 0 chr5 27660084 27660162 -124877097 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 796 209 279 16 16 chr5 27660759 27660821 -124876438 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 796 317 296 85 38 chr5 27660869 27661080 -124876179 - B4A SINE B4 -69 223 3 1 796 327 25 0 0 chr5 27663250 27663290 -124873969 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 796 315 0 0 0 chr5 27663357 27663392 -124873867 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 796 397 269 42 0 chr5 27663552 27663671 -124873588 - MTEa LTR MaLR -5 374 251 1 796 545 0 15 0 chr5 27663690 27663755 -124873504 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 796 328 94 0 70 chr5 27664846 27664903 -124872356 - HAL1-3A_ME LINE L1 -830 2028 1976 1 796 301 379 55 47 chr5 27664974 27665229 -124872030 - B4 SINE B4 -24 268 12 1 796 903 259 113 33 chr5 27665868 27666203 -124871056 - ORR1E LTR MaLR 0 419 1 1 796 191 235 0 19 chr5 27666211 27666263 -124870996 - L2c LINE L2 -1 3386 3336 2 796 375 291 8 0 chr5 27667253 27667370 -124869889 - L1MB4 LINE L1 0 6180 6063 2 796 299 306 116 21 chr5 27667403 27667593 -124869666 - L1MB4 LINE L1 -186 5997 5790 2 796 1271 73 0 11 chr5 27667623 27667804 -124869455 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 796 1158 70 0 0 chr5 27667804 27667946 -124869313 - B1_Mus1 SINE Alu -5 143 2 2 796 349 343 28 20 chr5 27667956 27668209 -124869050 - L1M3 LINE L1 -362 5818 5564 2 796 250 213 16 0 chr5 27668260 27668321 -124868938 - L1M3 LINE L1 -623 5560 5499 2 796 241 265 0 0 chr5 27668321 27668370 -124868889 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 2 796 449 309 69 27 chr5 27668371 27668793 -124868466 - L1M3 LINE L1 -904 5242 4801 2 796 263 226 0 0 chr5 27669058 27669111 -124868148 - MLT1A0 LTR MaLR -57 308 256 2 796 374 202 93 47 chr5 27669252 27669418 -124867841 - RLTR13D3 LTR ERVK 0 1114 851 2 796 226 128 0 0 chr5 27669666 27669705 -124867554 - B2_Mm2 SINE B2 -156 39 1 2 796 810 283 81 40 chr5 27670194 27670765 -124866494 - L1M3 LINE L1 -1667 4473 3880 2 796 1250 118 6 0 chr5 27671261 27671439 -124865820 + B2_Mm1t SINE B2 1 179 -14 2 796 228 296 14 0 chr5 27671563 27671634 -124865625 - BC1_Mm scRNA scRNA -78 74 3 2 796 327 253 0 13 chr5 27671634 27671710 -124865549 - PB1D10 SINE Alu -1 116 42 2 796 249 312 81 54 chr5 27671940 27672126 -124865133 + B3A SINE B2 5 195 -3 2 796 3677 2 0 0 chr5 27672149 27672557 -124864702 - L1_Mm LINE L1 -1810 4073 3666 2 796 907 9 0 9 chr5 27672557 27672673 -124864586 + L1Md_A LINE L1 6466 6580 -2 2 796 285 118 0 0 chr5 27672676 27672727 -124864532 + (A)n Simple_repeat Simple_repeat 1 51 0 2 796 575 267 28 50 chr5 27673264 27673426 -124863833 + B3A SINE B2 1 162 -36 2 796 231 36 0 0 chr5 27673426 27673454 -124863805 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 796 575 267 28 50 chr5 27673454 27673472 -124863787 + B3A SINE B2 163 177 -21 2 796 1482 54 38 0 chr5 27673839 27674024 -124863235 + B2_Mm2 SINE B2 2 193 -2 2 796 1263 254 91 11 chr5 27674702 27675052 -124862207 + MTE2b LTR MaLR 1 378 -1 2 796 2030 138 30 3 chr5 27677161 27677495 -124859764 - ORR1C1 LTR MaLR -15 363 21 2 796 671 286 44 47 chr5 27678434 27678709 -124858550 + B4 SINE B4 1 274 -18 2 796 329 62 21 0 chr5 27678711 27678759 -124858500 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 796 724 314 51 40 chr5 27680387 27680662 -124856597 + B4 SINE B4 11 288 -4 2 796 1718 157 119 31 chr5 27681055 27681442 -124855817 - RMER10A LTR ERVL 0 442 22 2 796 1736 174 26 29 chr5 27681580 27681928 -124855331 + ORR1B1 LTR MaLR 47 393 -1 2 796 1133 89 0 6 chr5 27682165 27682382 -124854877 - L1Md_F2 LINE L1 0 6582 6415 2 796 243 0 0 0 chr5 27683272 27683299 -124853960 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 796 23 0 0 0 chr5 27683456 27683479 -124853780 + AT_rich Low_complexity Low_complexity 1 23 0 2 796 550 278 14 0 chr5 27683509 27683653 -124853606 - RSINE1 SINE B4 -11 154 9 2 796 246 32 0 0 chr5 27683874 27683905 -124853354 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 796 515 223 36 0 chr5 27683952 27684064 -124853195 + PB1D10 SINE Alu 1 116 -1 2 796 186 335 131 31 chr5 27684191 27684382 -124852877 + MIR SINE MIR 43 252 -10 2 796 227 189 19 0 chr5 27684524 27684577 -124852682 + G-rich Low_complexity Low_complexity 2 55 0 2 796 1128 73 0 0 chr5 27684636 27684787 -124852472 + (GGAA)n Simple_repeat Simple_repeat 3 153 0 2 796 22 0 0 0 chr5 27684968 27684990 -124852269 + AT_rich Low_complexity Low_complexity 1 22 0 2 796 533 307 64 19 chr5 27684990 27685302 -124851957 - L1MD3 LINE L1 -11 7984 7659 2 796 39888 54 1 23 chr5 27685444 27692124 -124845135 - L1Md_T LINE L1 0 6582 99 2 796 469 282 184 0 chr5 27692124 27692369 -124844890 + MLT1B LTR MaLR 95 384 -6 2 796 1490 238 58 19 chr5 27693125 27693490 -124843769 + MTE2b LTR MaLR 1 379 0 2 796 559 237 66 15 chr5 27694780 27694917 -124842342 - B1_Mur1 SINE Alu -2 147 4 2 796 204 40 0 0 chr5 27695018 27695043 -124842216 + (CATG)n Simple_repeat Simple_repeat 1 25 0 2 796 580 207 33 0 chr5 27695085 27695206 -124842053 - B3A SINE B2 -73 125 1 2 796 521 268 49 0 chr5 27695209 27695351 -124841908 - B1F SINE Alu 0 149 1 2 796 576 346 5 29 chr5 27696220 27696428 -124840831 + B4 SINE B4 2 204 -88 2 796 357 24 0 0 chr5 27696428 27696470 -124840789 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 796 513 168 25 13 chr5 27696471 27696628 -124840631 + (TA)n Simple_repeat Simple_repeat 1 159 0 2 796 342 304 67 7 chr5 27696733 27696882 -124840377 - MLT1D LTR MaLR -57 448 291 2 796 298 186 0 54 chr5 27698422 27698496 -124838763 - Lx8 LINE L1 -2 7471 7402 2 796 620 307 24 56 chr5 27698536 27698788 -124838471 - B4A SINE B4 -9 283 40 2 796 222 43 20 60 chr5 27701026 27701076 -124836183 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 2 796 1230 61 0 0 chr5 27701076 27701224 -124836035 - B1_Mus1 SINE Alu 0 148 1 2 796 1756 306 47 13 chr5 27701671 27702284 -124834975 - Lx8 LINE L1 -363 7110 6477 2 796 214 304 16 50 chr5 27703492 27703613 -124833646 + CT-rich Low_complexity Low_complexity 1 117 0 2 796 256 133 0 22 chr5 27704337 27704383 -124832876 - L1_Mur2 LINE L1 -1684 4193 4149 2 796 8425 51 1 3 chr5 27704381 27705648 -124831611 + L1_Mus1 LINE L1 5306 6567 0 2 796 946 268 97 15 chr5 27706509 27706867 -124830392 + MTD LTR MaLR 18 421 0 2 796 778 127 28 0 chr5 27707056 27707198 -124830061 + CT-rich Low_complexity Low_complexity 3 148 0 2 796 644 254 31 17 chr5 27710335 27710528 -124826731 + B3A SINE B2 1 209 -7 2 796 323 216 73 98 chr5 27710599 27710722 -124826537 + L1M4 LINE L1 3781 3900 -2246 2 796 219 326 74 22 chr5 27710734 27710869 -124826390 - RSINE1 SINE B4 -21 144 3 2 796 201 131 49 0 chr5 27710884 27710945 -124826314 + T-rich Low_complexity Low_complexity 5 68 0 2 796 815 46 9 0 chr5 27711146 27711255 -124826004 + B1_Mus1 SINE Alu 38 147 -1 2 796 298 313 212 22 chr5 27711273 27711636 -124825623 - L1M4 LINE L1 -1038 5108 4677 2 796 796 241 79 4 chr5 27711683 27711912 -124825347 - ORR1D2 LTR MaLR -4 366 121 2 796 286 197 68 27 chr5 27714249 27714322 -124822937 - RLTR23 LTR ERV1 -31 399 324 2 796 1154 75 0 13 chr5 27714627 27714776 -124822483 + B1_Mus1 SINE Alu 1 147 -1 2 796 180 0 0 0 chr5 27716101 27716121 -124821138 + (TC)n Simple_repeat Simple_repeat 2 21 0 2 796 733 255 43 24 chr5 27716777 27716986 -124820273 - B3 SINE B2 -2 214 2 2 796 976 200 280 17 chr5 27718180 27718480 -124818779 - MTEb LTR MaLR 0 379 1 2 796 2205 145 3 0 chr5 27718890 27719215 -124818044 - ORR1A3 LTR MaLR 0 326 1 2 796 320 317 53 32 chr5 27719781 27719945 -124817314 - MLT1B LTR MaLR -17 373 209 2 796 583 13 26 0 chr5 27719945 27720021 -124817238 + (TC)n Simple_repeat Simple_repeat 2 79 0 2 796 320 317 53 32 chr5 27720021 27720045 -124817214 - MLT1B LTR MaLR -182 208 181 2 796 530 284 77 0 chr5 27720280 27720435 -124816824 + B4 SINE B4 48 214 -78 2 796 608 289 77 0 chr5 27720493 27720649 -124816610 - B3A SINE B2 -29 169 2 2 796 261 83 0 0 chr5 27720708 27720744 -124816515 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 796 29 28 0 0 chr5 27721097 27721133 -124816126 + AT_rich Low_complexity Low_complexity 1 36 0 2 796 1072 109 0 0 chr5 27722505 27722652 -124814607 + B1_Mus1 SINE Alu 2 148 0 2 796 40 0 0 0 chr5 27722652 27722692 -124814567 + AT_rich Low_complexity Low_complexity 1 40 0 2 796 612 192 11 11 chr5 27723568 27723747 -124813512 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 796 22 56 0 0 chr5 27723825 27723861 -124813398 + AT_rich Low_complexity Low_complexity 1 36 0 2 796 251 235 0 0 chr5 27724581 27724632 -124812627 + ID4_ SINE ID 24 74 -9 2 796 207 105 26 0 chr5 27724659 27724697 -124812562 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 2 796 199 0 0 61 chr5 27726436 27726469 -124810790 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 796 213 119 0 0 chr5 27726980 27727022 -124810237 + (T)n Simple_repeat Simple_repeat 1 42 0 2 796 180 176 0 0 chr5 27727127 27727161 -124810098 + GA-rich Low_complexity Low_complexity 1 34 0 2 796 345 131 24 12 chr5 27727154 27727239 -124810020 + G-rich Low_complexity Low_complexity 3 88 0 2 796 204 277 0 0 chr5 27727427 27727474 -124809785 + C-rich Low_complexity Low_complexity 5 51 0 2 796 207 0 0 0 chr5 27728171 27728194 -124809065 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 796 1034 162 0 16 chr5 27728549 27728743 -124808516 - ORR1C2 LTR MaLR -20 364 174 2 796 240 111 0 0 chr5 27728744 27728780 -124808479 + (GGGAGA)n Simple_repeat Simple_repeat 2 37 0 2 796 751 231 15 76 chr5 27728783 27728980 -124808279 - ORR1C2 LTR MaLR -191 187 3 2 796 226 297 13 63 chr5 27730144 27730223 -124807036 - ID_B1 SINE B4 0 224 150 2 796 657 234 34 39 chr5 27730731 27730909 -124806350 - MTEb LTR MaLR -13 366 190 2 796 1414 192 133 3 chr5 27730916 27731261 -124805998 - MTD LTR MaLR -12 407 18 2 796 484 283 121 6 chr5 27731277 27731451 -124805808 - MTEb LTR MaLR -185 194 1 2 796 387 0 0 0 chr5 27731989 27732032 -124805227 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 796 294 29 0 0 chr5 27732032 27732066 -124805193 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 796 274 303 0 53 chr5 27732073 27732167 -124805092 + PB1D10 SINE Alu 23 111 -6 2 796 1296 259 67 64 chr5 27733705 27734081 -124803178 - MTE2a LTR MaLR 0 379 3 2 796 251 284 86 0 chr5 27734302 27734383 -124802876 + B1_Mus1 SINE Alu 1 88 -60 2 796 670 243 50 66 chr5 27734649 27734847 -124802412 + B3A SINE B2 2 196 -2 2 796 572 293 44 6 chr5 27735140 27735298 -124801961 - Lx8 LINE L1 -155 7318 7155 3 796 387 41 0 0 chr5 27735845 27735894 -124801365 + (CAA)n Simple_repeat Simple_repeat 2 50 0 3 796 625 268 91 5 chr5 27735951 27736150 -124801109 - B3 SINE B2 0 216 1 3 796 609 260 243 0 chr5 27736260 27736495 -124800764 - Lx8 LINE L1 -5 7468 7177 3 796 293 250 0 0 chr5 27736572 27736628 -124800631 + B3A SINE B2 53 108 -90 3 796 652 69 0 38 chr5 27736678 27736783 -124800476 + (TTTTC)n Simple_repeat Simple_repeat 2 102 0 3 796 4040 188 50 4 chr5 27736788 27737543 -124799716 - Lx5 LINE L1 -29 7021 6232 3 796 1380 217 159 11 chr5 27737957 27738321 -124798938 - MTD LTR MaLR -1 418 1 3 796 229 279 0 14 chr5 27738366 27738435 -124798824 + GA-rich Low_complexity Low_complexity 2 69 0 3 796 522 225 170 62 chr5 27739386 27739580 -124797679 - B3 SINE B2 0 216 2 3 796 2482 152 24 26 chr5 27739875 27740370 -124796889 - RLTR28 LTR ERVL -3 521 28 3 796 973 255 112 12 chr5 27741173 27741495 -124795764 + ORR1E LTR MaLR 1 354 -5 3 796 575 308 158 12 chr5 27742459 27742712 -124794547 + B4A SINE B4 3 292 0 3 796 397 225 61 12 chr5 27743029 27743153 -124794106 + B3 SINE B2 1 132 -61 3 796 189 0 0 0 chr5 27743750 27743771 -124793488 + (T)n Simple_repeat Simple_repeat 1 21 0 3 796 481 276 114 61 chr5 27744292 27744488 -124792771 - L1MC3 LINE L1 -7 7778 7551 3 796 1323 56 0 0 chr5 27744488 27744809 -124792450 + (CA)n Simple_repeat Simple_repeat 1 321 0 3 796 481 276 114 61 chr5 27744809 27744906 -124792353 - L1MC3 LINE L1 -235 7550 7466 3 796 374 303 92 40 chr5 27744900 27745388 -124791871 - L1M4c LINE L1 -4640 2006 1666 3 796 334 280 45 39 chr5 27745401 27745557 -124791702 - L1M4c LINE L1 -5981 561 405 3 796 339 25 0 0 chr5 27745807 27745847 -124791412 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 796 432 0 0 0 chr5 27745850 27745898 -124791361 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 796 234 0 0 0 chr5 27746549 27746575 -124790684 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 3 796 186 71 0 0 chr5 27746590 27746618 -124790641 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 796 351 182 0 147 chr5 27746634 27746750 -124790509 + MT2B LTR ERVL 167 265 -336 3 796 599 148 8 17 chr5 27746648 27746765 -124790494 + B1_Mur4 SINE Alu 12 127 -23 3 796 797 142 64 87 chr5 27746705 27746915 -124790344 - RLTR9D LTR ERVK -11 404 208 3 796 2964 59 27 44 chr5 27747540 27747950 -124789309 - RLTR9D LTR ERVK 0 403 1 3 796 1784 216 30 5 chr5 27748261 27748665 -124788594 + MTD LTR MaLR 6 419 0 3 796 674 244 77 57 chr5 27748927 27749136 -124788123 + B3 SINE B2 1 213 -3 3 796 338 240 27 0 chr5 27749558 27749633 -124787626 - MTEb LTR MaLR -299 80 4 3 796 183 42 0 0 chr5 27750151 27750175 -124787084 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 3 796 549 163 218 0 chr5 27750552 27750699 -124786560 - MTEa LTR MaLR -152 227 49 3 796 484 200 8 8 chr5 27753381 27753502 -124783757 + GA-rich Low_complexity Low_complexity 3 123 0 3 796 266 220 156 11 chr5 27753995 27754091 -124783168 - PB1D9 SINE Alu -8 112 1 3 796 522 46 0 0 chr5 27754135 27754200 -124783059 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 3 796 330 195 0 0 chr5 27754204 27754260 -124782999 + polypurine Low_complexity Low_complexity 2 57 0 3 796 1130 105 6 0 chr5 27754260 27754432 -124782827 + (GAAA)n Simple_repeat Simple_repeat 1 173 0 3 796 330 195 0 0 chr5 27754432 27754446 -124782813 + polypurine Low_complexity Low_complexity 58 71 0 3 796 1035 112 6 11 chr5 27754446 27754627 -124782632 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 796 330 195 0 0 chr5 27754627 27754642 -124782617 + polypurine Low_complexity Low_complexity 72 86 0 3 796 1006 140 6 6 chr5 27754659 27754839 -124782420 + GA-rich Low_complexity Low_complexity 1 180 0 3 796 389 20 20 0 chr5 27754839 27754889 -124782370 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 3 796 618 239 21 7 chr5 27754891 27755034 -124782225 + RSINE1 SINE B4 2 146 -19 3 796 217 360 9 35 chr5 27755647 27755762 -124781497 + PB1D9 SINE Alu 2 113 -7 3 796 3107 23 0 0 chr5 27756245 27756591 -124780668 - ORR1A0 LTR MaLR 0 346 1 3 796 1203 68 0 0 chr5 27758057 27758203 -124779056 + B1_Mm SINE Alu 1 146 -1 3 796 1123 212 138 22 chr5 27758501 27758868 -124778391 - MTD LTR MaLR -21 398 5 3 796 477 286 53 0 chr5 27759915 27760048 -124777211 - RSINE1 SINE B4 -23 142 3 3 796 8277 31 0 4 chr5 27760471 27761775 -124775484 - L1Md_T LINE L1 -3 6579 5283 3 796 912 219 223 21 chr5 27762048 27762380 -124774879 + MTD LTR MaLR 3 401 -18 3 796 1062 183 196 20 chr5 27762404 27762710 -124774549 - Lx8 LINE L1 -380 7093 6734 3 796 597 291 114 36 chr5 27762906 27763213 -124774046 + Lx8 LINE L1 7136 7466 -7 3 796 3918 66 14 0 chr5 27763652 27764238 -124773021 - L1_Mus3 LINE L1 -549 6089 5497 3 796 1218 55 0 0 chr5 27764630 27764776 -124772483 + B1_Mm SINE Alu 2 147 0 3 796 270 0 0 0 chr5 27765037 27765067 -124772192 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 796 803 309 43 33 chr5 27765256 27765557 -124771702 - Lx8 LINE L1 -346 7127 6824 3 796 664 252 7 0 chr5 27765642 27765797 -124771462 - B3A SINE B2 -41 157 2 3 796 249 339 113 60 chr5 27767441 27767626 -124769633 + B4A SINE B4 57 251 -41 3 796 201 307 0 43 chr5 27767630 27767722 -124769537 + (CATA)n Simple_repeat Simple_repeat 3 90 0 3 796 1456 186 24 3 chr5 27767874 27768165 -124769094 - ORR1D1 LTR MaLR -30 344 48 3 796 227 275 14 0 chr5 27768345 27768414 -124768845 + L1MEg LINE L1 1439 1508 -4734 3 796 1145 55 7 7 chr5 27768464 27768611 -124768648 + B1_Mus2 SINE Alu 1 147 0 3 796 214 123 0 95 chr5 27768612 27768675 -124768584 + A-rich Low_complexity Low_complexity 3 59 0 3 796 8237 43 1 3 chr5 27769417 27771047 -124766212 - L1Md_F2 LINE L1 0 6582 4958 3 796 13293 48 0 2 chr5 27771048 27772695 -124764564 + L1Md_F2 LINE L1 3250 4892 -991 3 796 316 270 44 23 chr5 27772690 27772838 -124764421 - L1M3 LINE L1 -1434 4709 4552 3 796 734 252 0 39 chr5 27772881 27773087 -124764172 + B3A SINE B2 1 198 0 3 796 506 280 24 68 chr5 27773114 27773321 -124763938 + B3A SINE B2 1 198 0 3 796 367 316 40 37 chr5 27773321 27773620 -124763639 + L1MEg LINE L1 2964 3263 -2883 3 796 393 306 7 7 chr5 27774177 27774315 -124762944 + L1M5 LINE L1 3393 3530 -2616 3 796 1628 232 58 5 chr5 27775115 27775509 -124761750 + MTD LTR MaLR 2 416 -3 3 796 390 42 0 0 chr5 27776164 27776212 -124761047 + (TCC)n Simple_repeat Simple_repeat 2 49 0 3 796 740 258 30 0 chr5 27776495 27776662 -124760597 + B3A SINE B2 12 183 -15 3 796 976 235 93 12 chr5 27776957 27777215 -124760044 - B4 SINE B4 -8 284 6 3 796 857 251 51 0 chr5 27779154 27779349 -124757910 + B3 SINE B2 12 216 0 3 796 400 306 124 15 chr5 27779888 27780147 -124757112 - ORR1E LTR MaLR -9 350 64 3 796 323 207 273 11 chr5 27780578 27780666 -124756593 + PB1D9 SINE Alu 1 111 -9 3 796 340 259 11 11 chr5 27780767 27780857 -124756402 - MTEb LTR MaLR -2 377 288 3 796 569 292 73 6 chr5 27780874 27781053 -124756206 + MTEb-int LTR MaLR 1388 1578 -2 3 796 354 309 214 0 chr5 27781055 27781280 -124755979 + MTEb LTR MaLR 1 273 -106 3 796 844 201 82 10 chr5 27781317 27781387 -124755872 - B3 SINE B2 -6 210 131 3 796 207 0 0 0 chr5 27781387 27781410 -124755849 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 796 844 201 82 10 chr5 27781410 27781535 -124755724 - B3 SINE B2 -86 130 2 3 796 203 191 24 0 chr5 27782895 27782937 -124754322 + GA-rich Low_complexity Low_complexity 2 44 0 3 796 21 36 0 0 chr5 27783880 27783908 -124753351 + AT_rich Low_complexity Low_complexity 1 28 0 3 796 303 309 49 74 chr5 27784597 27784800 -124752459 + MER102a DNA MER1_type 105 304 -26 3 796 240 252 94 70 chr5 27784771 27784899 -124752360 - MTE2a LTR MaLR -248 131 1 3 796 2042 144 136 0 chr5 27785082 27785449 -124751810 - MTC LTR MaLR 0 421 5 3 796 1026 117 17 8 chr5 27785577 27785809 -124751450 + (TCTA)n Simple_repeat Simple_repeat 1 234 0 3 796 2496 298 15 22 chr5 27785878 27786682 -124750577 - Lx9 LINE L1 -311 7333 6536 3 99 874 330 162 20 chr5 27786818 27787366 -124749893 - MER44C DNA MER2_type -98 635 10 3 797 266 167 82 16 chr5 27788441 27788502 -124748757 - RMER15 LTR ERVL -105 470 406 3 797 279 270 40 0 chr5 27788502 27788576 -124748683 - Lx8 LINE L1 -205 7268 7192 3 797 1121 141 130 5 chr5 27788951 27789151 -124748108 - URR1A DNA MER1_type 0 226 2 3 797 1192 251 96 38 chr5 27789416 27789869 -124747390 - RLTR20B3 LTR ERVK -56 521 20 3 797 2883 159 37 24 chr5 27789875 27790421 -124746838 - MYSERV16_I-int LTR ERVK 0 2326 1774 3 797 893 195 23 0 chr5 27790422 27790596 -124746663 + ORR1D1 LTR MaLR 197 374 0 3 797 305 316 0 21 chr5 27790950 27791047 -124746212 + MLT1A1 LTR MaLR 305 399 -9 3 797 559 345 63 18 chr5 27791083 27791417 -124745842 + L1M5 LINE L1 3618 3966 -2180 3 797 403 339 118 45 chr5 27793854 27794277 -124742982 - MER82 DNA MER2_type -158 495 42 3 797 1912 46 0 16 chr5 27794902 27795145 -124742114 - L1_Mus1 LINE L1 0 6567 6329 3 797 4089 111 6 21 chr5 27795148 27795780 -124741479 + L1_Mm LINE L1 4757 5408 -775 3 797 825 11 0 0 chr5 27796172 27796266 -124740993 + (GGAGA)n Simple_repeat Simple_repeat 2 95 0 3 797 21 57 0 0 chr5 27798307 27798342 -124738917 + AT_rich Low_complexity Low_complexity 1 35 0 3 797 531 0 0 0 chr5 27798427 27798486 -124738773 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 797 260 284 62 35 chr5 27798497 27798610 -124738649 - Lx7 LINE L1 -361 7335 7220 4 797 333 336 25 0 chr5 27799406 27799528 -124737731 - MLT1F2 LTR MaLR -34 526 402 4 797 366 221 12 21 chr5 27799540 27799642 -124737617 + B1F1 SINE Alu 2 100 -27 4 797 417 86 0 0 chr5 27799905 27799963 -124737296 + (CCA)n Simple_repeat Simple_repeat 1 58 0 4 797 270 318 107 117 chr5 27799969 27800165 -124737094 - MLT1F2 LTR MaLR -167 393 200 4 797 681 13 0 0 chr5 27802239 27802317 -124734942 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 4 797 460 116 11 11 chr5 27802582 27802669 -124734590 + (TATG)n Simple_repeat Simple_repeat 3 89 0 4 797 618 248 12 97 chr5 27802697 27802862 -124734397 + B3A SINE B2 2 152 -46 4 797 273 98 0 0 chr5 27802872 27802913 -124734346 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 797 321 167 0 0 chr5 27802913 27802991 -124734268 + GA-rich Low_complexity Low_complexity 1 78 0 4 797 722 273 60 26 chr5 27803371 27803633 -124733626 - L1MA4A LINE L1 -379 5924 5636 4 797 674 175 6 0 chr5 27805214 27805391 -124731868 + (TG)n Simple_repeat Simple_repeat 2 179 0 4 797 459 52 0 0 chr5 27808068 27808126 -124729133 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 797 335 321 41 31 chr5 27808588 27808784 -124728475 - L1ME1 LINE L1 -65 6114 5917 4 797 299 258 100 30 chr5 27809950 27810050 -124727209 + PB1D10 SINE Alu 3 109 -8 4 797 225 0 0 0 chr5 27811258 27811283 -124725976 + (TTC)n Simple_repeat Simple_repeat 1 25 0 4 797 387 0 0 0 chr5 27811283 27811326 -124725933 + (TTA)n Simple_repeat Simple_repeat 3 45 0 4 797 216 0 0 0 chr5 27811587 27811611 -124725648 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4 797 3287 139 4 16 chr5 27811611 27812113 -124725146 - Lx4A LINE L1 -9 7049 6552 4 797 311 329 11 46 chr5 27812118 27812209 -124725050 + Lx8 LINE L1 6951 7038 -435 4 797 396 0 0 0 chr5 27812209 27812253 -124725006 + (TAA)n Simple_repeat Simple_repeat 2 45 0 4 797 311 329 11 46 chr5 27812253 27812336 -124724923 + Lx8 LINE L1 7039 7119 -354 4 797 388 277 49 78 chr5 27813301 27813505 -124723754 + Lx8 LINE L1 7274 7471 -2 4 797 1154 241 104 4 chr5 27813540 27813819 -124723440 - MTE2a LTR MaLR -30 349 43 4 797 1426 287 25 2 chr5 27814369 27814764 -124722495 - Lx8 LINE L1 -412 7061 6658 4 797 237 297 41 82 chr5 27814766 27814986 -124722273 + Lx8 LINE L1 7263 7473 0 4 797 303 270 90 0 chr5 27815889 27815989 -124721270 + PB1D10 SINE Alu 11 116 -1 4 797 2150 92 6 16 chr5 27816147 27816469 -124720790 - ORR1A2 LTR MaLR -8 319 1 4 797 430 329 61 90 chr5 27816507 27816784 -124720475 + B4 SINE B4 8 276 -16 4 797 336 236 61 54 chr5 27817849 27817997 -124719262 - HAL1-3A_ME LINE L1 -734 2124 1976 4 797 410 321 128 43 chr5 27818018 27818276 -124718983 - B4 SINE B4 0 292 13 4 797 231 88 0 0 chr5 27818906 27818940 -124718319 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 4 797 476 322 46 55 chr5 27819319 27819644 -124717615 - Lx9 LINE L1 -407 7237 6916 4 797 758 324 50 14 chr5 27819645 27820211 -124717048 - L1M2 LINE L1 -1145 4998 4413 4 797 7442 77 15 1 chr5 27820246 27821262 -124715997 - L1_Mus2 LINE L1 0 6566 5537 4 797 1703 94 15 15 chr5 27821263 27821522 -124715737 + Lx2 LINE L1 6739 6997 0 4 797 243 182 23 0 chr5 27823023 27823067 -124714192 - PB1D9 SINE Alu -23 97 53 4 797 219 279 25 12 chr5 27825833 27825913 -124711346 + MER5A DNA MER1_type 1 81 -108 4 797 285 75 0 0 chr5 27826056 27826096 -124711163 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 4 797 1268 243 46 126 chr5 27828756 27829298 -124707961 - RLTR19 LTR ERVK 0 499 1 4 797 245 319 10 62 chr5 27829356 27829453 -124707806 + PB1D10 SINE Alu 20 111 -6 4 797 1959 189 89 24 chr5 27830402 27830852 -124706407 + RLTR19 LTR ERVK 14 492 -7 4 797 1027 209 131 112 chr5 27831146 27831433 -124705826 + RMER6B LTR ERVK 1 280 -181 4 797 942 74 30 0 chr5 27831433 27831568 -124705691 - L1_Mus1 LINE L1 -2 6565 6427 4 797 1027 209 131 112 chr5 27831568 27831716 -124705543 + RMER6B LTR ERVK 281 444 -17 4 797 1529 179 16 6 chr5 27831739 27832060 -124705199 - Lx2A1 LINE L1 -8 7000 6677 4 797 18974 179 30 10 chr5 27832060 27835708 -124701551 - Lx2A1 LINE L1 -536 6461 2813 4 797 195 42 0 0 chr5 27835708 27835732 -124701527 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 797 18974 191 33 8 chr5 27835732 27836695 -124700564 - Lx2A1 LINE L1 -3074 2812 1787 4 797 31799 123 21 16 chr5 27836692 27843183 -124694076 - L1Md_F2 LINE L1 -3 6579 244 4 797 260 188 0 14 chr5 27844474 27844544 -124692715 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 4 797 384 256 16 43 chr5 27844544 27844781 -124692478 + (CAGAGA)n Simple_repeat Simple_repeat 1 230 0 4 797 769 287 29 5 chr5 27844911 27845121 -124692138 + B3 SINE B2 2 216 0 4 797 23 0 0 0 chr5 27845121 27845144 -124692115 + AT_rich Low_complexity Low_complexity 1 23 0 4 797 1807 211 25 42 chr5 27846495 27846900 -124690359 + MTD LTR MaLR 8 405 -14 4 797 220 396 14 7 chr5 27846919 27847064 -124690195 - MIRb SINE MIR -114 154 9 4 797 290 219 177 0 chr5 27847151 27847247 -124690012 - B1F SINE Alu -29 120 8 4 797 438 312 58 31 chr5 27847551 27847812 -124689447 - L1MEc LINE L1 -3718 2601 2334 4 797 461 317 87 10 chr5 27847815 27848022 -124689237 + MER58A DNA MER1_type 2 224 0 4 797 258 265 78 10 chr5 27848177 27848280 -124688979 - L1MEc LINE L1 -4246 2154 2045 4 797 264 149 0 0 chr5 27848442 27848489 -124688770 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 797 917 271 29 41 chr5 27848579 27848825 -124688434 - B4A SINE B4 -8 284 42 4 797 213 159 23 0 chr5 27848910 27848954 -124688305 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 4 797 352 266 10 96 chr5 27848961 27849065 -124688194 - PB1 SINE Alu -7 120 20 4 797 1784 178 41 22 chr5 27849177 27849540 -124687719 - ORR1C2 LTR MaLR -14 370 1 4 797 185 159 0 22 chr5 27850057 27850102 -124687157 + CT-rich Low_complexity Low_complexity 1 44 0 4 797 11724 109 17 1 chr5 27850363 27852839 -124684420 - L1Md_F LINE L1 -2988 2895 380 4 797 803 247 183 62 chr5 27852855 27853226 -124684033 + Lx8 LINE L1 7047 7462 -11 4 797 1767 157 98 43 chr5 27854653 27855025 -124682234 - Lx2 LINE L1 0 6997 6260 4 797 1318 230 78 46 chr5 27855956 27856329 -124680930 + MTD LTR MaLR 20 404 -15 4 797 227 203 27 80 chr5 27856349 27856424 -124680835 - L1MB4 LINE L1 -38 6142 6072 4 797 3859 117 20 50 chr5 27856535 27856946 -124680313 - RMER17A LTR ERVK -15 736 341 4 797 795 50 0 0 chr5 27856946 27857046 -124680213 + (GGGGA)n Simple_repeat Simple_repeat 4 103 0 4 797 3859 117 20 50 chr5 27857046 27857393 -124679866 - RMER17A LTR ERVK -411 340 1 4 797 570 355 24 38 chr5 27857573 27857860 -124679399 - B4A SINE B4 -8 284 2 4 797 235 191 16 16 chr5 27857977 27858041 -124679218 + CT-rich Low_complexity Low_complexity 3 66 0 4 797 265 333 13 0 chr5 27858047 27858122 -124679137 - ID4 SINE ID 0 83 8 4 797 983 216 33 14 chr5 27858168 27858379 -124678880 - B3 SINE B2 0 216 2 4 797 844 220 8 37 chr5 27858976 27859262 -124677997 + MTA_Mm LTR MaLR 7 396 0 4 797 7317 60 11 34 chr5 27859262 27860228 -124677031 + MERVL-int LTR ERVL 3 946 -4539 4 797 1385 39 0 27 chr5 27860228 27860413 -124676846 + MTA_Mm LTR MaLR 217 396 0 4 797 738 85 0 0 chr5 27860413 27860519 -124676740 - MusHAL1 LINE L1 -1257 2096 1991 4 797 2738 61 17 55 chr5 27860513 27861001 -124676258 - MusHAL1 LINE L1 -2296 1057 589 4 797 7255 102 30 3 chr5 27860975 27862088 -124675171 - L1_Mus4 LINE L1 -3 6633 5491 4 797 4093 109 18 13 chr5 27862080 27862700 -124674559 - L1VL4 LINE L1 -5464 838 216 4 797 851 252 14 14 chr5 27865205 27865414 -124671845 + ID_B1 SINE B4 7 215 -9 4 797 778 226 0 87 chr5 27866090 27866298 -124670961 + B3A SINE B2 9 198 0 4 797 428 156 11 0 chr5 27866739 27866829 -124670430 + (TG)n Simple_repeat Simple_repeat 1 91 0 4 797 528 258 153 65 chr5 27866833 27867094 -124670165 - B4 SINE B4 -4 288 5 4 797 224 209 14 69 chr5 27867205 27867277 -124669982 - MIR SINE MIR -134 128 61 4 797 818 219 68 24 chr5 27867790 27867996 -124669263 - B3 SINE B2 0 216 2 4 797 204 40 0 0 chr5 27868008 27868033 -124669226 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 4 797 444 270 34 34 chr5 27868037 27868156 -124669103 - ID_B1 SINE B4 -18 206 88 4 797 898 241 0 35 chr5 27868775 27868977 -124668282 + B3A SINE B2 1 195 -3 4 797 444 51 0 0 chr5 27869106 27869165 -124668094 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 797 537 194 13 6 chr5 27869173 27869329 -124667930 + GA-rich Low_complexity Low_complexity 1 157 0 4 797 289 152 25 25 chr5 27869893 27869974 -124667285 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 4 797 457 212 26 26 chr5 27870122 27870238 -124667021 - PB1D10 SINE Alu -1 116 1 4 797 1308 93 21 16 chr5 27870273 27870459 -124666800 + B2_Mm2 SINE B2 1 187 -8 4 797 233 238 154 82 chr5 27871838 27871948 -124665311 + MTE2a LTR MaLR 210 327 -52 4 797 768 70 49 0 chr5 27872314 27872456 -124664803 + (TCTCTG)n Simple_repeat Simple_repeat 2 150 0 4 797 499 279 8 0 chr5 27872804 27872933 -124664326 - B1F SINE Alu -7 142 13 4 797 612 303 65 4 chr5 27873056 27873288 -124663971 - L1M5 LINE L1 -382 5797 5552 4 797 261 0 0 0 chr5 27873302 27873331 -124663928 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 797 35 0 0 0 chr5 27875553 27875588 -124661671 + AT_rich Low_complexity Low_complexity 1 35 0 4 797 181 269 19 0 chr5 27876900 27876952 -124660307 - MIR SINE MIR -90 118 66 4 797 186 43 0 0 chr5 27878678 27878701 -124658558 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 797 363 96 0 0 chr5 27878701 27878753 -124658506 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 797 1176 48 7 7 chr5 27878833 27878979 -124658280 + B1_Mm SINE Alu 2 147 0 4 797 458 204 160 49 chr5 27879019 27879163 -124658096 + RMER30 DNA MER1_type 30 189 -13 4 797 775 219 94 10 chr5 27879245 27879448 -124657811 - B4A SINE B4 -71 221 2 5 797 405 0 0 0 chr5 27880568 27880613 -124656646 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 797 276 290 28 0 chr5 27881812 27881919 -124655340 - L1MA7 LINE L1 -13 6278 6169 5 797 574 235 51 13 chr5 27881989 27882167 -124655092 + B3A SINE B2 19 203 -13 5 797 213 225 0 0 chr5 27882167 27882207 -124655052 + (CATA)n Simple_repeat Simple_repeat 1 40 0 5 797 627 185 0 27 chr5 27882207 27882390 -124654869 + (TA)n Simple_repeat Simple_repeat 2 179 0 5 797 22 35 0 0 chr5 27883022 27883051 -124654208 + AT_rich Low_complexity Low_complexity 1 29 0 5 797 688 266 81 23 chr5 27883108 27883366 -124653893 + B4A SINE B4 1 273 -19 5 797 446 161 11 0 chr5 27883517 27883610 -124653649 + CT-rich Low_complexity Low_complexity 1 94 0 5 797 456 19 0 0 chr5 27884262 27884315 -124652944 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 797 471 279 56 6 chr5 27884423 27884533 -124652726 + B4A SINE B4 105 223 -69 5 797 297 0 0 0 chr5 27884533 27884566 -124652693 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 5 797 471 279 56 6 chr5 27884566 27884617 -124652642 + B4A SINE B4 224 273 -19 5 797 234 128 0 0 chr5 27884648 27884687 -124652572 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 797 676 236 256 3 chr5 27885444 27885745 -124651514 - MTE2b LTR MaLR -2 377 1 5 797 331 224 0 0 chr5 27886119 27886177 -124651082 - B3 SINE B2 -155 61 4 5 797 592 251 166 0 chr5 27886528 27886691 -124650568 + B3A SINE B2 3 192 -6 5 797 1718 139 18 44 chr5 27887702 27888040 -124649219 + ORR1A4 LTR MaLR 1 329 0 5 797 264 229 0 116 chr5 27888740 27888809 -124648450 + B1F SINE Alu 1 61 -88 5 797 17151 22 0 0 chr5 27888810 27891440 -124645819 - L1Md_T LINE L1 -1 6581 3952 5 797 222 226 19 0 chr5 27891458 27891511 -124645748 + B1F SINE Alu 79 132 -17 5 797 754 139 7 7 chr5 27891554 27891692 -124645567 + G-rich Low_complexity Low_complexity 4 141 0 5 797 983 217 14 101 chr5 27892787 27893064 -124644195 + ORR1B1 LTR MaLR 38 290 -104 5 797 1267 196 71 56 chr5 27893271 27893595 -124643664 - ORR1D1 LTR MaLR -45 329 1 5 797 192 77 0 0 chr5 27893682 27893708 -124643551 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 797 246 161 0 13 chr5 27893736 27893795 -124643464 - B2_Mm2 SINE B2 -115 101 46 5 797 3016 78 5 47 chr5 27893795 27894225 -124643034 - L1_Mus2 LINE L1 -4 6562 6151 5 797 287 239 59 84 chr5 27895366 27895485 -124641774 + MIRc SINE MIR 33 148 -120 5 797 368 237 8 0 chr5 27896715 27896846 -124640413 + (CCCTAA)n Simple_repeat Simple_repeat 3 134 0 5 797 521 252 98 23 chr5 27896872 27897069 -124640190 + L1MA7 LINE L1 5171 5397 -903 5 797 840 240 34 20 chr5 27897069 27897273 -124639986 + B3 SINE B2 4 210 -6 5 797 601 299 117 23 chr5 27897273 27897798 -124639461 + L1MA7 LINE L1 5398 5992 -299 5 797 2299 46 0 11 chr5 27899922 27900205 -124637054 - L1Md_A LINE L1 0 6582 6303 5 797 242 208 167 0 chr5 27900273 27900345 -124636914 + B2_Mm2 SINE B2 81 164 -31 5 797 238 172 15 30 chr5 27900363 27900429 -124636830 + GA-rich Low_complexity Low_complexity 3 67 0 5 797 908 156 5 90 chr5 27900756 27900967 -124636292 - ORR1A4 LTR MaLR -136 193 1 5 797 351 0 0 0 chr5 27901359 27901398 -124635861 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 797 248 279 63 132 chr5 27901530 27901559 -124635700 - B2_Mm1a SINE B2 -16 177 155 5 797 378 0 0 0 chr5 27901559 27901601 -124635658 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 797 542 236 117 47 chr5 27901601 27901761 -124635498 - B3A SINE B2 -38 160 1 5 797 221 226 32 16 chr5 27902031 27902094 -124635165 + CT-rich Low_complexity Low_complexity 5 68 0 5 797 999 279 72 25 chr5 27902143 27902503 -124634756 + MTE2a LTR MaLR 1 377 -2 5 797 768 233 19 0 chr5 27903073 27903232 -124634027 + RSINE1 SINE B4 3 164 -1 5 797 320 0 0 0 chr5 27904252 27904293 -124632966 - L1_Mus1 LINE L1 -599 5968 5928 5 797 3941 49 0 0 chr5 27904290 27904818 -124632441 + L1_Mus1 LINE L1 5396 5923 -643 5 797 4941 161 90 2 chr5 27904818 27905771 -124631488 - MTC-int LTR MaLR -194 1064 28 5 797 832 261 17 111 chr5 27905771 27906068 -124631191 + ORR1E LTR MaLR 89 357 -2 5 797 308 83 21 0 chr5 27906745 27906793 -124630466 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 797 851 312 60 35 chr5 27906831 27906895 -124630364 - B4A SINE B4 -3 289 232 5 797 423 0 0 0 chr5 27906895 27906942 -124630317 + (TTGG)n Simple_repeat Simple_repeat 2 48 0 5 797 1159 64 0 0 chr5 27906942 27907082 -124630177 - B1_Mus1 SINE Alu -7 141 2 5 797 851 312 60 35 chr5 27907082 27907298 -124629961 - B4A SINE B4 -61 231 2 5 797 1815 201 78 0 chr5 27907941 27908324 -124628935 - MTD LTR MaLR -6 413 1 5 797 229 349 28 0 chr5 27908493 27908599 -124628660 - MLT1A0 LTR MaLR -237 128 20 5 797 1083 154 139 13 chr5 27909439 27909676 -124627583 - ORR1B1 LTR MaLR -127 267 1 5 797 1252 47 0 0 chr5 27910436 27910584 -124626675 + B1_Mus1 SINE Alu 1 148 0 5 797 472 278 80 0 chr5 27910594 27910745 -124626514 - MTE2a LTR MaLR -43 336 174 5 797 1082 305 66 14 chr5 27910764 27911506 -124625753 - Lx9 LINE L1 -141 7503 6761 5 797 410 262 72 94 chr5 27911526 27911707 -124625552 - MTE2a LTR MaLR -202 177 1 5 797 480 18 0 0 chr5 27912319 27912376 -124624883 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 797 429 274 56 7 chr5 27912457 27912608 -124624651 + MTE2b LTR MaLR 2 167 -212 5 797 234 216 12 86 chr5 27912959 27913040 -124624219 - L1M5 LINE L1 -478 5646 5572 5 797 230 293 22 96 chr5 27913311 27913447 -124623812 + MT2A LTR ERVL 5 130 -403 5 797 811 275 146 31 chr5 27913333 27913656 -124623603 + MTE2a LTR MaLR 20 379 0 5 797 326 218 7 0 chr5 27914044 27914196 -124623063 + (CA)n Simple_repeat Simple_repeat 1 153 0 5 797 363 23 0 0 chr5 27917540 27917584 -124619675 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 797 213 263 0 109 chr5 27917584 27917648 -124619611 - RSINE1 SINE B4 -106 59 3 5 99 1737 210 64 20 chr5 27918322 27918715 -124618544 + MTC LTR MaLR 1 410 -11 5 798 339 167 15 0 chr5 27918727 27918793 -124618466 + B3A SINE B2 64 130 -68 5 798 515 221 40 97 chr5 27919485 27919660 -124617599 - RMER30 DNA MER1_type -28 174 10 5 798 216 0 0 0 chr5 27920451 27920475 -124616784 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 798 402 74 0 0 chr5 27920475 27920529 -124616730 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 798 2338 170 3 0 chr5 27920609 27920986 -124616273 - ORR1C1 LTR MaLR 0 378 1 5 798 1533 214 68 11 chr5 27921523 27921877 -124615382 + ORR1D1 LTR MaLR 1 374 0 5 798 992 246 105 56 chr5 27921899 27922222 -124615037 - ORR1D1 LTR MaLR -4 370 32 5 798 300 300 0 0 chr5 27923409 27923489 -124613770 + PB1D10 SINE Alu 21 100 -17 5 798 289 247 48 58 chr5 27923817 27923920 -124613339 - MER5B DNA MER1_type 0 178 77 5 798 373 317 82 12 chr5 27924455 27924698 -124612561 + L1MB3 LINE L1 5822 6081 -102 5 798 909 305 87 3 chr5 27926025 27926311 -124610948 - MTE2b LTR MaLR -67 312 3 5 798 935 311 164 12 chr5 27926705 27927199 -124610060 - Lx8 LINE L1 -146 7327 6759 5 798 1806 226 41 10 chr5 27927229 27927677 -124609582 - L1MA4 LINE L1 -373 5927 5465 5 798 294 324 0 10 chr5 27928764 27928867 -124608392 - RMER30 DNA MER1_type -63 139 38 5 798 1222 259 83 16 chr5 27929259 27929632 -124607627 - MTD LTR MaLR -17 402 5 5 798 320 344 63 0 chr5 27930683 27930872 -124606387 + Charlie20a DNA Charlie 185 385 -422 5 798 20290 147 103 6 chr5 27932504 27938062 -124599197 - Lx2 LINE L1 0 6997 850 5 798 265 280 140 0 chr5 27938119 27938226 -124599033 - ORR1E LTR MaLR -235 124 3 5 798 570 253 58 0 chr5 27938226 27938376 -124598883 - ORR1E-int LTR MaLR -51 1529 1370 5 798 292 291 102 8 chr5 27938451 27938569 -124598690 - ORR1E-int LTR MaLR -887 693 565 5 798 190 0 32 32 chr5 27938569 27938600 -124598659 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 798 1138 50 0 0 chr5 27938600 27938739 -124598520 - B1_Mm SINE Alu -8 139 1 5 798 918 180 212 13 chr5 27938763 27938994 -124598265 - MTC LTR MaLR -8 413 137 5 798 656 240 99 16 chr5 27942110 27942292 -124594967 + ID_B1 SINE B4 12 208 -16 5 798 1431 75 25 0 chr5 27943440 27943640 -124593619 + L1_Mus4 LINE L1 6426 6630 -6 5 798 616 91 0 10 chr5 27943657 27943757 -124593502 + Lx LINE L1 6549 6647 -7 5 798 201 273 0 0 chr5 27943805 27943849 -124593410 + MIRc SINE MIR 158 201 -67 5 798 191 36 0 35 chr5 27945051 27945080 -124592179 + (TTC)n Simple_repeat Simple_repeat 3 30 0 5 798 194 0 39 0 chr5 27945080 27945106 -124592153 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 798 691 201 52 0 chr5 27945114 27945248 -124592011 - B1_Mus2 SINE Alu 0 147 7 5 798 251 258 29 101 chr5 27945155 27945293 -124591966 - MT2B LTR ERVL -343 258 131 5 798 248 255 9 105 chr5 27946875 27946980 -124590279 - RMER1C Other Other -2 1340 1246 5 798 697 268 223 16 chr5 27946896 27947348 -124589911 - Lx8 LINE L1 -2 7471 6926 5 798 987 103 0 0 chr5 27947897 27948043 -124589216 + (GGGA)n Simple_repeat Simple_repeat 2 147 0 5 798 519 17 0 0 chr5 27948254 27948314 -124588945 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 798 668 311 7 0 chr5 27948624 27948772 -124588487 + RSINE1 SINE B4 9 157 -8 5 798 307 267 29 29 chr5 27949428 27949532 -124587727 - ID_B1 SINE B4 0 224 121 5 798 308 94 19 0 chr5 27949607 27949660 -124587599 + (TGAA)n Simple_repeat Simple_repeat 1 54 0 5 798 661 205 145 53 chr5 27951195 27951422 -124585837 - MLT1C LTR MaLR -208 259 12 5 798 1646 32 0 0 chr5 27951479 27951665 -124585594 + B2_Mm1a SINE B2 1 186 -7 5 798 1692 221 85 11 chr5 27952006 27952381 -124584878 - MTD LTR MaLR -2 417 15 5 798 456 201 55 62 chr5 27952418 27952562 -124584697 - L1MA9 LINE L1 -211 5960 5818 6 798 323 284 5 0 chr5 27952960 27953185 -124584074 + (TG)n Simple_repeat Simple_repeat 1 226 0 6 798 553 160 23 40 chr5 27953926 27954102 -124583157 + CT-rich Low_complexity Low_complexity 2 174 0 6 798 427 272 8 34 chr5 27955133 27955251 -124582008 + PB1D10 SINE Alu 1 115 -2 6 798 402 237 135 135 chr5 27955663 27955752 -124581507 + B4 SINE B4 3 91 -201 6 798 526 193 57 40 chr5 27955752 27955876 -124581383 + B1_Mur3 SINE Alu 3 128 -21 6 798 791 259 0 33 chr5 27955877 27956057 -124581202 + B4 SINE B4 81 254 -38 6 798 7384 79 12 7 chr5 27956057 27957795 -124579464 + L1VL2 LINE L1 185 1932 -1683 6 798 1088 243 107 16 chr5 27958341 27958659 -124578600 + MLT1A0 LTR MaLR 19 365 0 6 798 612 263 79 75 chr5 27959300 27959514 -124577745 - ID_B1 SINE B4 -7 217 3 6 798 241 255 90 20 chr5 27959514 27959603 -124577656 - MLT1A LTR MaLR -255 119 24 6 798 378 0 0 0 chr5 27959848 27959890 -124577369 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 798 202 235 20 0 chr5 27959912 27959963 -124577296 + (CATA)n Simple_repeat Simple_repeat 1 52 0 6 798 807 252 70 87 chr5 27960587 27960874 -124576385 + B4 SINE B4 5 286 -6 6 798 212 250 0 0 chr5 27960878 27960926 -124576333 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 798 989 248 9 9 chr5 27962998 27963214 -124574045 - B3 SINE B2 0 216 1 6 798 4442 145 12 57 chr5 27963732 27964498 -124572761 - RMER19A LTR ERVK 0 737 7 6 798 208 280 9 114 chr5 27964581 27964686 -124572573 + L2 LINE L2 2350 2443 -976 6 798 213 252 193 26 chr5 27965218 27965332 -124571927 + L2 LINE L2 2749 2881 -538 6 798 405 0 0 0 chr5 27965563 27965608 -124571651 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 798 10244 36 7 3 chr5 27965781 27967708 -124569551 - L1Md_F2 LINE L1 -1 6581 4647 6 798 815 223 25 49 chr5 27967804 27968007 -124569252 + B3A SINE B2 1 198 0 6 798 218 333 178 50 chr5 27968098 27968199 -124569060 + RSINE1 SINE B4 12 125 -40 6 798 225 94 0 0 chr5 27968199 27968231 -124569028 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 798 200 243 0 0 chr5 27968514 27968551 -124568708 - MIRm SINE MIR -33 243 207 6 798 23 68 0 0 chr5 27968780 27968824 -124568435 + AT_rich Low_complexity Low_complexity 1 44 0 6 798 1230 180 10 0 chr5 27970522 27970722 -124566537 + B3 SINE B2 9 210 -6 6 798 921 193 27 27 chr5 27972025 27972211 -124565048 - ORR1C2 LTR MaLR -64 320 135 6 798 10914 55 2 7 chr5 27972211 27973472 -124563787 - L1Md_F2 LINE L1 -445 6137 4883 6 798 5048 41 2 0 chr5 27973472 27974063 -124563196 - L1Md_F2 LINE L1 0 6582 5991 6 798 10914 59 3 13 chr5 27974063 27974449 -124562810 - L1Md_F2 LINE L1 -1001 4882 4504 6 798 250 217 16 16 chr5 27974422 27974483 -124562776 + L1Md_F2 LINE L1 6176 6236 -346 6 798 990 68 26 26 chr5 27974483 27974634 -124562625 + L1Md_F2 LINE L1 6428 6578 -4 6 798 610 186 43 21 chr5 27974648 27974793 -124562466 - ORR1C2 LTR MaLR -233 141 1 6 798 718 124 8 15 chr5 27974976 27975107 -124562152 + (TAGA)n Simple_repeat Simple_repeat 3 132 0 6 798 296 148 16 0 chr5 27975135 27975196 -124562063 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 6 798 420 20 0 0 chr5 27975196 27975245 -124562014 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 6 798 1099 93 3 23 chr5 27975275 27975584 -124561675 + (TGGA)n Simple_repeat Simple_repeat 1 303 0 6 798 351 150 0 0 chr5 27975628 27975688 -124561571 + (TGGA)n Simple_repeat Simple_repeat 1 60 0 6 798 949 147 7 0 chr5 27976138 27976281 -124560978 + B1_Mur4 SINE Alu 2 145 -5 6 798 887 200 12 9 chr5 27976964 27977149 -124560110 + B3 SINE B2 3 184 -11 6 798 1016 275 132 12 chr5 27977721 27978063 -124559196 - Lx8 LINE L1 -11 7462 7080 6 798 182 291 43 85 chr5 27980548 27980642 -124556617 - L3 LINE CR1 -474 4015 3926 6 798 484 249 57 17 chr5 27980873 27981049 -124556210 + B3A SINE B2 1 183 -15 6 798 32 26 0 0 chr5 27981058 27981097 -124556162 + AT_rich Low_complexity Low_complexity 1 39 0 6 798 1059 266 79 10 chr5 27981522 27981826 -124555433 - ORR1D2 LTR MaLR 0 370 46 6 798 726 240 72 15 chr5 27981833 27981860 -124555399 + MTEa LTR MaLR 174 209 -170 6 798 477 0 0 0 chr5 27981860 27981913 -124555346 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 798 726 240 72 15 chr5 27981913 27982080 -124555179 + MTEa LTR MaLR 210 379 0 6 798 693 262 18 35 chr5 27982152 27982322 -124554937 - B3 SINE B2 -48 168 2 6 798 777 262 139 17 chr5 27982379 27982732 -124554527 + L1M1 LINE L1 5328 5723 -577 6 798 934 256 57 75 chr5 27982836 27983220 -124554039 - MTEa LTR MaLR 0 379 3 6 798 261 291 131 36 chr5 27983292 27983378 -124553881 + L1MA8 LINE L1 6032 6126 -165 6 798 1003 188 33 24 chr5 27983378 27983591 -124553668 + B3 SINE B2 2 216 0 6 798 261 291 131 36 chr5 27983591 27983725 -124553534 + L1MA8 LINE L1 6127 6272 -19 6 798 256 197 13 78 chr5 27983773 27983850 -124553409 - L1M4 LINE L1 -336 5848 5777 6 798 281 256 37 0 chr5 27983907 27983989 -124553270 + L1MB5 LINE L1 5877 5961 -213 6 798 627 291 117 24 chr5 27986045 27986292 -124550967 + B4 SINE B4 3 272 -20 6 798 711 104 0 0 chr5 27986295 27986401 -124550858 + (CA)n Simple_repeat Simple_repeat 1 106 0 6 798 698 246 162 36 chr5 27987681 27987934 -124549325 - B4A SINE B4 -6 286 2 6 798 180 0 0 0 chr5 27989152 27989172 -124548087 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 798 782 294 61 34 chr5 27990424 27990688 -124546571 + B4 SINE B4 4 274 -18 6 798 249 33 0 0 chr5 27990732 27990762 -124546497 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 798 414 0 0 0 chr5 27991473 27991519 -124545740 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 798 609 69 0 0 chr5 27991519 27991605 -124545654 + (CA)n Simple_repeat Simple_repeat 1 87 0 6 798 229 260 0 39 chr5 27991709 27991761 -124545498 + RLTR12B LTR ERVK 187 236 -292 6 798 780 91 0 0 chr5 27993471 27993581 -124543678 + (TG)n Simple_repeat Simple_repeat 1 110 0 6 798 541 354 6 0 chr5 27993604 27993765 -124543494 - RSINE1 SINE B4 0 165 4 6 798 248 322 223 51 chr5 27994343 27994500 -124542759 - MLT1C LTR MaLR -66 401 218 6 798 368 295 35 18 chr5 27994514 27994628 -124542631 - MLT1C LTR MaLR -344 123 8 6 798 633 200 16 8 chr5 27994657 27994783 -124542476 + B3A SINE B2 2 128 -70 6 798 666 0 0 0 chr5 27994808 27994882 -124542377 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 6 798 236 343 40 42 chr5 27995703 27995882 -124541377 + MIR SINE MIR 42 220 -48 6 798 924 255 107 0 chr5 27996118 27996361 -124540898 + B4A SINE B4 19 287 -5 6 798 256 224 28 56 chr5 27996554 27996625 -124540634 + MER117 DNA MER1_type 123 191 -6 6 798 250 246 13 40 chr5 27997255 27997331 -124539928 + MTE2a LTR MaLR 290 363 -16 6 798 611 232 75 56 chr5 27997511 27997671 -124539588 + RSINE1 SINE B4 3 165 0 6 798 333 328 0 4 chr5 27997690 27997917 -124539342 + (CA)n Simple_repeat Simple_repeat 1 226 0 6 798 290 258 56 0 chr5 27999263 27999352 -124537907 - PB1D10 SINE Alu -22 95 2 6 798 306 291 130 30 chr5 27999639 27999770 -124537489 + ID_B1 SINE B4 77 220 -4 6 798 1316 198 106 124 chr5 28000689 28001075 -124536184 + MTE2a LTR MaLR 1 379 0 1 798 1050 104 0 0 chr5 28001453 28001587 -124535672 + B1_Mus1 SINE Alu 2 135 -13 2 798 231 94 0 0 chr5 28002249 28002281 -124534978 - ORR1D2 LTR MaLR -1 369 338 3 798 1251 99 6 0 chr5 28002315 28002487 -124534772 - B2_Mm2 SINE B2 -22 173 1 4 798 282 291 19 46 chr5 28002684 28002792 -124534467 + CT-rich Low_complexity Low_complexity 1 105 0 5 798 688 193 0 48 chr5 28003077 28003202 -124534057 - B1_Mur1 SINE Alu -5 144 26 6 798 240 35 0 0 chr5 28003202 28003231 -124534028 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 798 247 277 10 60 chr5 28003288 28003388 -124533871 + L1MC4a LINE L1 6477 6571 -1311 8 798 874 245 116 101 chr5 28004533 28004851 -124532408 + MTE2a LTR MaLR 14 336 -43 9 798 1184 23 41 0 chr5 28004857 28005029 -124532230 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1 798 194 156 22 0 chr5 28005031 28005076 -124532183 + CT-rich Low_complexity Low_complexity 3 48 0 1 798 924 154 63 42 chr5 28005078 28005268 -124531991 - B2_Mm2 SINE B2 -1 194 1 1 798 304 242 0 0 chr5 28005269 28005331 -124531928 + MTE2a LTR MaLR 312 373 -6 9 798 523 312 16 8 chr5 28005569 28005698 -124531561 - RSINE1 SINE B4 -35 130 1 1 798 1014 230 10 0 chr5 28006065 28006269 -124530990 - B3 SINE B2 -9 207 2 1 798 483 112 0 0 chr5 28006542 28006631 -124530628 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 798 360 0 0 0 chr5 28006632 28006672 -124530587 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 798 251 343 157 0 chr5 28006709 28006849 -124530410 + MLT1C LTR MaLR 232 393 -74 1 798 189 0 0 0 chr5 28007771 28007792 -124529467 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 1 798 1133 37 0 0 chr5 28007792 28007927 -124529332 - B1_Mus1 SINE Alu -4 144 10 1 798 237 289 46 108 chr5 28007927 28007986 -124529273 + YREP_Mm Unknown Unknown 181 362 -1450 2 798 2102 171 17 68 chr5 28008381 28008796 -124528463 - ORR1B1 LTR MaLR 0 394 1 2 798 271 325 40 57 chr5 28008860 28008984 -124528275 + MIR SINE MIR 112 233 -29 2 798 602 319 20 45 chr5 28009341 28009541 -124527718 - RMER30 DNA MER1_type -7 195 1 2 798 341 288 0 83 chr5 28009560 28009681 -124527578 - PB1D10 SINE Alu 0 117 7 2 798 526 289 94 0 chr5 28009605 28009754 -124527505 - ID_B1 SINE B4 -61 163 1 2 798 256 264 227 11 chr5 28010554 28010642 -124526617 + PB1D7 SINE Alu 1 107 -13 2 798 207 0 0 0 chr5 28010643 28010666 -124526593 + (GGA)n Simple_repeat Simple_repeat 2 24 0 2 798 261 323 62 67 chr5 28010961 28011170 -124526089 - YREP_Mm Unknown Unknown -1424 388 181 2 798 554 278 56 0 chr5 28011049 28011175 -124526084 + ID_B1 SINE B4 92 224 0 2 798 1035 168 111 0 chr5 28012597 28012787 -124524472 - B3 SINE B2 -5 211 1 3 798 366 167 17 0 chr5 28013069 28013129 -124524130 - HAL1-3A_ME LINE L1 -822 2036 1976 3 798 198 103 0 0 chr5 28013148 28013177 -124524082 + (TATG)n Simple_repeat Simple_repeat 1 29 0 3 798 383 108 43 0 chr5 28013213 28013306 -124523953 + (TG)n Simple_repeat Simple_repeat 1 97 0 3 798 503 305 50 25 chr5 28013332 28013534 -124523725 - B4A SINE B4 -9 283 77 3 798 1664 216 39 19 chr5 28013972 28014331 -124522928 + ORR1D2 LTR MaLR 2 367 -3 3 798 223 203 29 0 chr5 28014869 28014938 -124522321 + CT-rich Low_complexity Low_complexity 2 72 0 3 798 332 238 36 0 chr5 28015031 28015115 -124522144 + MTEb LTR MaLR 291 377 -2 3 798 1308 108 0 11 chr5 28015116 28015304 -124521955 + B2_Mm2 SINE B2 1 186 -9 3 798 334 286 39 33 chr5 28016061 28016242 -124521017 - L1MA7 LINE L1 -161 6130 5949 3 798 1057 283 51 16 chr5 28016254 28016792 -124520467 - L1MA7 LINE L1 -392 5899 5341 3 798 806 216 74 0 chr5 28016798 28016974 -124520285 + B3A SINE B2 2 190 -8 4 798 344 179 0 13 chr5 28016977 28017038 -124520221 + GA-rich Low_complexity Low_complexity 4 64 0 4 798 1154 106 0 11 chr5 28017038 28017220 -124520039 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 798 344 179 0 13 chr5 28017220 28017237 -124520022 + polypurine Low_complexity Low_complexity 65 81 0 4 798 605 331 87 12 chr5 28017294 28017548 -124519711 - B4A SINE B4 0 292 20 4 798 724 232 82 28 chr5 28017747 28017956 -124519303 + B3A SINE B2 3 209 -7 4 798 663 244 0 15 chr5 28017956 28018093 -124519166 + B1_Mur3 SINE Alu 1 135 -14 4 798 351 0 0 0 chr5 28018094 28018133 -124519126 + (TAA)n Simple_repeat Simple_repeat 1 39 0 4 798 1029 231 10 0 chr5 28018138 28018337 -124518922 + B3 SINE B2 3 203 -13 4 798 735 207 14 28 chr5 28018400 28018544 -124518715 + B1_Mur2 SINE Alu 1 142 -7 4 798 25 51 0 0 chr5 28018559 28018598 -124518661 + AT_rich Low_complexity Low_complexity 1 39 0 5 798 195 304 12 37 chr5 28019087 28019169 -124518090 + MIRb SINE MIR 177 256 -12 5 798 512 294 67 0 chr5 28019420 28019600 -124517659 + MER53 DNA hAT 1 192 -1 5 798 441 297 78 7 chr5 28019717 28019976 -124517283 + L1MA4 LINE L1 5654 5932 -368 5 798 23 78 0 0 chr5 28019984 28020035 -124517224 + AT_rich Low_complexity Low_complexity 1 51 0 5 798 546 294 85 6 chr5 28020158 28020322 -124516937 - B3A SINE B2 -18 180 4 5 798 485 42 28 0 chr5 28020536 28020607 -124516652 + (CAGAGA)n Simple_repeat Simple_repeat 6 78 0 5 798 2207 202 33 59 chr5 28020644 28021323 -124515936 + BGLII_B LTR ERVK 1 553 0 5 798 3043 26 3 0 chr5 28021405 28021750 -124515509 - ORR1A0 LTR MaLR 0 346 1 5 798 182 299 101 29 chr5 28021852 28021921 -124515338 - L2a LINE L2 -52 3374 3301 5 798 568 357 24 20 chr5 28022901 28023155 -124514104 - B4A SINE B4 -4 288 34 6 798 403 315 192 43 chr5 28024003 28024305 -124512954 - MER31B LTR ERV1 -94 372 26 6 798 540 302 28 93 chr5 28024750 28024965 -124512294 + ID_B1 SINE B4 19 219 -5 6 798 344 77 19 0 chr5 28024972 28025024 -124512235 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 6 798 707 186 22 44 chr5 28025469 28025604 -124511655 + B1_Mur2 SINE Alu 1 132 -17 6 798 189 0 0 0 chr5 28025620 28025641 -124511618 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 798 435 211 216 18 chr5 28025642 28025753 -124511506 + B1_Mus2 SINE Alu 10 142 -5 6 798 215 207 0 33 chr5 28025754 28025814 -124511445 + G-rich Low_complexity Low_complexity 5 62 0 6 798 731 219 6 0 chr5 28025817 28025995 -124511264 + GA-rich Low_complexity Low_complexity 2 180 0 6 798 375 266 144 80 chr5 28026191 28026379 -124510880 - MLT1B LTR MaLR -187 203 4 6 798 774 181 22 7 chr5 28026534 28026673 -124510586 + B3 SINE B2 76 216 0 7 798 220 224 82 0 chr5 28026694 28026743 -124510516 + PB1D10 SINE Alu 65 117 0 7 798 226 67 22 22 chr5 28026744 28026790 -124510469 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 7 798 219 293 17 0 chr5 28027676 28027734 -124509525 + RSINE1 SINE B4 83 141 -24 7 798 330 132 0 0 chr5 28027783 28027836 -124509423 + (CAT)n Simple_repeat Simple_repeat 3 55 0 7 798 761 222 112 34 chr5 28029882 28030087 -124507172 + ID_B1 SINE B4 4 224 0 7 798 994 55 8 0 chr5 28030516 28030644 -124506615 - B1_Mus2 SINE Alu 0 147 19 7 798 599 153 9 47 chr5 28030697 28030825 -124506434 + B1_Mur1 SINE Alu 19 137 -10 7 798 1127 134 12 0 chr5 28030863 28031034 -124506225 - URR1A DNA MER1_type 0 226 54 7 798 292 234 12 47 chr5 28031091 28031176 -124506083 + ID4 SINE ID 2 83 0 7 798 886 208 88 0 chr5 28031688 28031880 -124505379 - B3 SINE B2 -7 209 1 8 798 1746 194 132 0 chr5 28034099 28034471 -124502788 - MTC LTR MaLR 0 421 1 8 798 1093 188 56 5 chr5 28038623 28038821 -124498438 + B3 SINE B2 9 216 0 8 798 717 174 19 0 chr5 28039230 28039391 -124497868 + CT-rich Low_complexity Low_complexity 3 166 0 8 798 225 108 0 0 chr5 28039412 28039449 -124497810 + (TCTCTG)n Simple_repeat Simple_repeat 2 38 0 8 798 230 167 24 0 chr5 28039449 28039491 -124497768 + CT-rich Low_complexity Low_complexity 1 43 0 8 798 698 274 28 67 chr5 28040223 28040297 -124496962 + B4 SINE B4 26 87 -205 8 798 1137 71 0 0 chr5 28040297 28040437 -124496822 + B1_Mus1 SINE Alu 3 142 -6 8 798 288 0 0 0 chr5 28040439 28040471 -124496788 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 8 798 698 274 28 67 chr5 28040471 28040647 -124496612 + B4 SINE B4 88 266 -26 8 798 476 32 0 16 chr5 28040647 28040710 -124496549 + (CA)n Simple_repeat Simple_repeat 2 63 0 8 798 896 243 201 20 chr5 28041382 28041680 -124495579 - ORR1E LTR MaLR -2 357 6 9 798 2072 156 82 3 chr5 28042073 28042440 -124494819 - RMER10B LTR ERVL 0 398 3 9 798 607 304 85 65 chr5 28042730 28043082 -124494177 - ORR1E LTR MaLR 0 359 1 9 798 1021 225 9 37 chr5 28043155 28043372 -124493887 + B3 SINE B2 2 212 -4 9 798 393 123 0 0 chr5 28043501 28043566 -124493693 + (CA)n Simple_repeat Simple_repeat 1 65 0 9 798 353 253 99 83 chr5 28045757 28045938 -124491321 - MTEa LTR MaLR -8 371 188 9 798 270 0 0 0 chr5 28046158 28046188 -124491071 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 9 798 227 275 96 36 chr5 28046210 28046293 -124490966 + PB1D7 SINE Alu 2 89 -31 9 798 510 17 0 0 chr5 28046332 28046391 -124490868 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 9 798 253 363 13 20 chr5 28046607 28046756 -124490503 + (CA)n Simple_repeat Simple_repeat 1 148 0 9 798 219 36 0 0 chr5 28046857 28046885 -124490374 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 798 241 273 39 0 chr5 28048489 28048566 -124488693 - ID4_ SINE ID -2 81 2 1 798 570 15 0 0 chr5 28048787 28048854 -124488405 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 798 599 262 0 26 chr5 28048916 28049069 -124488190 + B1_Mur1 SINE Alu 1 149 0 1 799 309 115 19 0 chr5 28051476 28051528 -124485731 - HAL1-3A_ME LINE L1 -830 2028 1976 1 799 684 154 0 0 chr5 28051531 28051706 -124485553 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 799 264 30 0 0 chr5 28051737 28051770 -124485489 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 799 360 0 0 0 chr5 28051770 28051809 -124485450 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 799 3165 54 46 0 chr5 28054083 28054472 -124482787 - MTB_Mm LTR MaLR 0 407 1 1 799 498 17 0 0 chr5 28054521 28054580 -124482679 + (GTTTG)n Simple_repeat Simple_repeat 5 63 0 1 799 483 191 21 21 chr5 28054601 28054687 -124482572 - B1_Mur1 SINE Alu -12 137 52 1 799 2361 86 9 24 chr5 28054687 28055019 -124482240 - ORR1A2 LTR MaLR 0 327 1 1 799 237 254 0 0 chr5 28055246 28055301 -124481958 - RMER15 LTR ERVL -106 469 415 1 799 2135 243 82 34 chr5 28055301 28055969 -124481290 - Lx8 LINE L1 -207 7266 6567 1 799 321 217 0 14 chr5 28056425 28056495 -124480764 - Lx8 LINE L1 -1011 6462 6394 1 799 262 250 132 0 chr5 28056594 28056662 -124480597 + ID_B1 SINE B4 110 186 -38 1 799 1037 168 65 10 chr5 28056733 28056932 -124480327 + B3 SINE B2 1 210 -6 1 799 405 271 0 0 chr5 28056962 28057084 -124480175 + GA-rich Low_complexity Low_complexity 3 124 0 1 799 255 103 0 0 chr5 28058335 28058374 -124478885 + (TCCCC)n Simple_repeat Simple_repeat 5 43 0 1 799 233 349 64 0 chr5 28058537 28058646 -124478613 + MLT1E LTR MaLR 499 614 -39 1 799 181 270 0 0 chr5 28059153 28059190 -124478069 + L2c LINE L2 2977 3013 -374 1 799 521 209 77 58 chr5 28059376 28059615 -124477644 - RMER17C LTR ERVK -107 303 1 1 799 394 222 0 80 chr5 28060039 28060127 -124477132 + RSINE1 SINE B4 2 82 -83 1 799 3724 125 154 24 chr5 28060670 28061453 -124475806 + RLTR13D2 LTR ERVK 1 1023 0 1 799 364 205 12 25 chr5 28061856 28061936 -124475323 + B3A SINE B2 2 80 -118 1 799 655 201 170 36 chr5 28061942 28062107 -124475152 + ORR1D1 LTR MaLR 1 187 -187 1 799 2298 175 10 29 chr5 28062171 28062308 -124474951 + MTC LTR MaLR 1 131 -290 1 799 1463 64 37 0 chr5 28062308 28062496 -124474763 + B2_Mm2 SINE B2 1 195 0 1 799 2298 175 10 29 chr5 28062496 28062775 -124474484 + MTC LTR MaLR 132 409 -12 1 799 3091 165 46 7 chr5 28062775 28063317 -124473942 + RLTR18 LTR ERVK 1 563 -53 1 799 216 0 0 0 chr5 28064072 28064096 -124473163 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 799 277 288 111 52 chr5 28064436 28064630 -124472629 - MLT1B LTR MaLR 0 374 167 1 799 238 273 0 143 chr5 28064655 28064732 -124472527 + B1F2 SINE Alu 33 98 -51 1 799 523 264 89 42 chr5 28064850 28065034 -124472225 + RLTR20B1 LTR ERVK 376 554 -9 1 799 277 238 111 12 chr5 28065081 28065162 -124472097 - MLT1D LTR MaLR -44 461 373 1 799 548 236 3 40 chr5 28065170 28065300 -124471959 + PB1D10 SINE Alu 7 128 -19 1 799 394 309 83 28 chr5 28066175 28066355 -124470904 + ID_B1 SINE B4 2 191 -33 1 799 322 247 4 25 chr5 28067261 28067365 -124469894 - B1_Mur1 SINE Alu -7 142 13 1 799 1092 115 16 47 chr5 28067520 28067700 -124469559 + B2_Mm2 SINE B2 8 182 -13 1 799 1214 61 0 0 chr5 28067700 28067847 -124469412 + B1_Mus2 SINE Alu 1 147 0 1 799 1092 115 16 47 chr5 28067847 28067858 -124469401 + B2_Mm2 SINE B2 183 193 -2 1 799 1048 166 102 5 chr5 28069359 28069565 -124467694 - URR1A DNA MER1_type 0 226 1 1 799 290 254 219 0 chr5 28069951 28070065 -124467194 + B1F SINE Alu 1 139 -10 1 799 1462 78 16 0 chr5 28070078 28070269 -124466990 + B2_Mm2 SINE B2 2 195 0 1 799 318 214 204 0 chr5 28071168 28071271 -124465988 - B1_Mus1 SINE Alu -1 147 24 1 799 2668 196 77 53 chr5 28071851 28072512 -124464747 - RLTR40 LTR ERVK -1 816 140 1 799 790 241 21 103 chr5 28072516 28072798 -124464461 + MYSERV-int LTR ERVK 4284 4542 -2008 1 799 387 160 112 41 chr5 28072804 28072902 -124464357 + MYSERV6-int LTR ERVK 8007 8111 -848 1 799 2058 123 16 3 chr5 28072902 28073219 -124464040 + ORR1A4 LTR MaLR 1 321 -8 1 799 2615 188 84 19 chr5 28073221 28073861 -124463398 + MYSERV6-int LTR ERVK 8105 8786 -173 1 799 447 228 108 0 chr5 28073845 28074003 -124463256 + MYSERV16_I-int LTR ERVK 2151 2325 -1 1 799 1977 110 86 30 chr5 28074004 28074342 -124462917 + RLTR15 LTR ERVK 3 359 0 1 799 301 262 0 0 chr5 28074855 28074935 -124462324 + 4.5SRNA scRNA scRNA 1 80 -14 1 799 213 212 167 0 chr5 28074893 28074959 -124462300 + PB1D10 SINE Alu 41 117 0 1 799 474 264 45 37 chr5 28075089 28075223 -124462036 + B1F2 SINE Alu 1 135 -14 1 799 1917 198 79 35 chr5 28075565 28075948 -124461311 + MTC LTR MaLR 1 408 -13 1 799 6502 50 20 8 chr5 28075948 28076746 -124460513 + RLTR13C2 LTR ERVK 1 808 0 1 799 1917 198 79 35 chr5 28076746 28076765 -124460494 + MTC LTR MaLR 409 421 0 1 799 1190 78 0 6 chr5 28077266 28077434 -124459825 + (GAAA)n Simple_repeat Simple_repeat 4 170 0 1 799 206 174 22 0 chr5 28077434 28077480 -124459779 + G-rich Low_complexity Low_complexity 4 50 0 1 799 624 279 6 13 chr5 28077887 28078043 -124459216 + RSINE1 SINE B4 2 156 -9 1 799 2243 141 14 0 chr5 28078353 28078708 -124458551 + Lx2B LINE L1 5771 6130 -870 1 799 1603 130 14 45 chr5 28078708 28078998 -124458261 + Lx2B LINE L1 6720 7000 0 1 799 454 242 86 0 chr5 28079596 28079724 -124457535 + ID_B1 SINE B4 86 224 0 1 799 881 180 185 6 chr5 28080739 28080912 -124456347 - B3 SINE B2 -12 204 1 1 799 238 235 88 0 chr5 28081682 28081750 -124455509 + B1F SINE Alu 75 148 -1 1 799 313 280 70 0 chr5 28081837 28081937 -124455322 + PB1D9 SINE Alu 8 114 -6 1 799 347 209 14 29 chr5 28081871 28081940 -124455319 + ID_B1 SINE B4 154 221 -3 1 799 1848 225 80 22 chr5 28081945 28082495 -124454764 + RMER1A Other Other 204 679 -351 1 799 1114 71 0 0 chr5 28082495 28082636 -124454623 - B2_Mm2 SINE B2 -51 144 4 1 799 180 0 0 0 chr5 28083165 28083185 -124454074 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 799 201 225 0 0 chr5 28083187 28083227 -124454032 + G-rich Low_complexity Low_complexity 1 40 0 1 799 189 0 0 0 chr5 28083434 28083455 -124453804 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 799 560 199 114 0 chr5 28085459 28085590 -124451669 + B1_Mur2 SINE Alu 1 146 -3 1 799 305 205 60 25 chr5 28085729 28085837 -124451422 + B1F SINE Alu 2 117 0 1 799 2923 157 48 22 chr5 28087470 28088017 -124449242 + RLTR31_Mm LTR ERVK 1 561 0 1 799 324 275 120 73 chr5 28088634 28088826 -124448433 + B3 SINE B2 2 202 -14 1 799 366 89 324 9 chr5 28089947 28090058 -124447201 - B2_Mm2 SINE B2 -3 192 47 1 799 1196 105 35 0 chr5 28090109 28090281 -124446978 - B2_Mm1t SINE B2 -14 179 2 1 799 334 208 7 7 chr5 28092278 28092423 -124444836 + (CTG)n Simple_repeat Simple_repeat 3 147 0 1 799 218 149 0 118 chr5 28092565 28092586 -124444673 + (CTGGGG)n Simple_repeat Simple_repeat 2 22 0 1 799 339 25 0 0 chr5 28092586 28092626 -124444633 + (CTG)n Simple_repeat Simple_repeat 1 40 0 1 799 218 149 0 118 chr5 28092626 28092680 -124444579 + (CTGGGG)n Simple_repeat Simple_repeat 4 49 0 1 799 251 239 44 15 chr5 28093055 28093123 -124444136 + B4 SINE B4 9 78 -214 1 799 592 274 0 0 chr5 28093599 28093723 -124443536 + ID_B1 SINE B4 80 203 -21 1 799 204 125 0 0 chr5 28093757 28093789 -124443470 + (GGA)n Simple_repeat Simple_repeat 2 33 0 1 799 318 311 85 90 chr5 28093808 28094009 -124443250 + B4 SINE B4 40 239 -53 1 799 261 368 0 0 chr5 28093993 28094069 -124443190 + RSINE1 SINE B4 85 160 -5 1 799 325 182 0 0 chr5 28094115 28094170 -124443089 + U6 snRNA snRNA 2 56 -51 1 799 1430 149 152 7 chr5 28094170 28094480 -124442779 + Lx9 LINE L1 7290 7644 0 1 799 567 150 119 52 chr5 28094856 28094990 -124442269 + B1_Mur3 SINE Alu 6 149 0 1 799 189 74 0 0 chr5 28095380 28095407 -124441852 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1 799 496 273 52 38 chr5 28096426 28096639 -124440620 - B3 SINE B2 0 216 1 1 799 790 99 9 0 chr5 28097187 28097298 -124439961 - B2_Mm2 SINE B2 -81 114 3 1 799 1151 74 98 43 chr5 28097422 28097606 -124439653 + B2_Mm2 SINE B2 2 195 0 1 799 219 170 0 0 chr5 28098991 28099038 -124438221 + CT-rich Low_complexity Low_complexity 2 48 0 1 799 708 293 176 40 chr5 28099653 28099977 -124437282 + MTE2b LTR MaLR 1 368 -11 1 799 629 195 23 54 chr5 28100541 28100671 -124436588 + B1_Mm SINE Alu 1 126 -21 1 799 308 253 4 12 chr5 28100761 28100838 -124436421 + B1F1 SINE Alu 53 144 -5 1 799 342 197 12 50 chr5 28101054 28101134 -124436125 - BC1_Mm scRNA scRNA -54 98 22 1 799 286 251 53 0 chr5 28101200 28101273 -124435986 - B3 SINE B2 -111 87 8 1 799 897 220 258 62 chr5 28101351 28101739 -124435520 + MT2A LTR ERVL 1 464 -69 1 799 511 201 15 0 chr5 28101743 28101877 -124435382 + (TCTA)n Simple_repeat Simple_repeat 4 139 0 1 799 214 210 0 127 chr5 28102436 28102507 -124434752 + ID4 SINE ID 17 78 -5 1 799 1043 189 38 19 chr5 28102530 28102740 -124434519 + B3 SINE B2 3 216 0 1 799 409 311 58 15 chr5 28102886 28103023 -124434236 + RSINE1 SINE B4 2 144 -21 1 799 192 97 0 0 chr5 28103038 28103069 -124434190 + (A)n Simple_repeat Simple_repeat 1 31 0 1 799 1060 170 72 18 chr5 28103522 28103744 -124433515 + Lx2A1 LINE L1 6774 7007 -1 2 799 570 212 70 70 chr5 28104768 28104842 -124432417 + ID_B1 SINE B4 82 164 -60 2 799 1402 184 89 47 chr5 28104842 28105201 -124432058 - ORR1D1 LTR MaLR 0 374 1 2 799 570 231 78 73 chr5 28105201 28105288 -124431971 + ID_B1 SINE B4 165 251 -41 2 799 216 266 30 30 chr5 28105878 28105944 -124431315 - L3 LINE CR1 -556 3933 3868 2 799 393 171 107 24 chr5 28106032 28106116 -124431143 + B1_Mur4 SINE Alu 60 150 0 2 799 318 315 70 56 chr5 28106568 28106783 -124430476 + L1M5 LINE L1 5280 5497 -676 2 799 255 122 0 0 chr5 28108491 28108540 -124428719 + (A)n Simple_repeat Simple_repeat 1 49 0 2 799 912 238 28 18 chr5 28109574 28109792 -124427467 - ID_B1 SINE B4 -4 220 1 2 799 581 198 282 40 chr5 28110813 28110987 -124426272 + B3 SINE B2 1 216 0 2 799 368 228 0 25 chr5 28111359 28111440 -124425819 - ID_B1 SINE B4 -1 223 145 2 799 426 200 24 0 chr5 28112266 28112351 -124424908 + B3 SINE B2 125 211 -5 2 799 2420 205 90 14 chr5 28112368 28112936 -124424323 + RMER19C LTR ERVK 1 611 0 2 799 717 163 66 122 chr5 28112949 28113085 -124424174 + ORR1C1 LTR MaLR 3 127 -251 2 799 946 135 14 0 chr5 28113085 28113226 -124424033 - B1_Mus1 SINE Alu -4 144 2 2 799 717 163 66 122 chr5 28113226 28113285 -124423974 + ORR1C1 LTR MaLR 128 187 -191 2 799 673 206 97 39 chr5 28113278 28113480 -124423779 + RLTR12B LTR ERVK 61 262 -266 2 799 180 0 0 0 chr5 28113484 28113504 -124423755 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 799 236 53 26 0 chr5 28113519 28113557 -124423702 + (CAGA)n Simple_repeat Simple_repeat 3 41 0 2 799 321 272 134 16 chr5 28113645 28113839 -124423420 + RLTR12B LTR ERVK 293 509 -19 2 799 1357 87 11 5 chr5 28114870 28115055 -124422204 - B2_Mm1t SINE B2 -4 189 4 2 799 36 40 0 0 chr5 28117822 28117872 -124419387 + GC_rich Low_complexity Low_complexity 1 50 0 2 799 646 203 70 32 chr5 28118479 28118637 -124418622 + RSINE1 SINE B4 2 165 0 2 799 730 236 88 5 chr5 28118656 28118848 -124418411 - B3 SINE B2 -7 209 2 2 799 1095 83 74 42 chr5 28119061 28119250 -124418009 - B2_Mm2 SINE B2 0 195 1 2 799 610 284 59 6 chr5 28119383 28119553 -124417706 + B3 SINE B2 11 189 -27 2 799 201 200 22 0 chr5 28119666 28119711 -124417548 + (TATG)n Simple_repeat Simple_repeat 4 49 0 2 799 1263 98 16 26 chr5 28119889 28120078 -124417181 - B2_Mm2 SINE B2 -7 188 2 2 799 1309 258 98 0 chr5 28120124 28120481 -124416778 + RCHARR1 DNA MER1_type 4 395 -579 2 799 435 293 78 7 chr5 28120659 28120800 -124416459 - B3A SINE B2 -47 151 1 2 799 516 273 49 7 chr5 28121337 28121481 -124415778 + ID_B1 SINE B4 73 222 -2 2 799 317 227 80 0 chr5 28121780 28121868 -124415391 + B1_Mur2 SINE Alu 43 137 -12 2 799 270 0 0 0 chr5 28121868 28121898 -124415361 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2 799 630 0 0 0 chr5 28121898 28121967 -124415292 + (GGGA)n Simple_repeat Simple_repeat 4 73 0 2 799 885 297 114 16 chr5 28122173 28122488 -124414771 - ORR1E LTR MaLR -9 350 5 2 799 312 329 47 47 chr5 28122490 28122640 -124414619 - RSINE1 SINE B4 -13 152 3 2 799 281 301 109 14 chr5 28122733 28122871 -124414388 - MER66-int LTR ERV1 0 6676 6526 2 799 4884 112 54 1 chr5 28122890 28123590 -124413669 - RMER19A LTR ERVK 0 737 1 2 799 261 0 0 0 chr5 28123964 28123993 -124413266 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2 799 848 254 19 14 chr5 28123993 28124201 -124413058 - ID_B1 SINE B4 -15 209 1 2 799 601 182 60 53 chr5 28124384 28124517 -124412742 + B1_Mus1 SINE Alu 13 146 -2 2 799 798 230 100 0 chr5 28124897 28125097 -124412162 + ID_B1 SINE B4 2 221 -3 2 799 589 256 41 82 chr5 28125326 28125594 -124411665 - RMER5 LTR ERV1 -54 480 224 2 799 373 190 67 34 chr5 28126565 28126683 -124410576 + B1_Mur1 SINE Alu 4 138 -11 2 799 1769 152 149 3 chr5 28126984 28127339 -124409920 - MTB_Mm LTR MaLR 0 407 1 2 799 324 0 0 0 chr5 28127581 28127617 -124409642 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 2 799 243 0 0 0 chr5 28127617 28127643 -124409616 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 799 512 311 0 0 chr5 28127738 28127857 -124409402 - B3A SINE B2 -79 119 1 2 799 21051 192 39 30 chr5 28128793 28130617 -124406642 - Lx6 LINE L1 -9 7451 5602 2 799 2040 131 25 0 chr5 28130617 28130938 -124406321 - ORR1A4 LTR MaLR 0 329 1 2 799 21051 145 31 35 chr5 28130938 28134447 -124402812 - Lx6 LINE L1 -279 5601 2087 2 799 234 0 0 0 chr5 28134447 28134473 -124402786 + (TTG)n Simple_repeat Simple_repeat 1 26 0 2 799 21051 145 31 35 chr5 28134473 28134579 -124402680 - Lx6 LINE L1 -3794 2086 1985 2 799 600 101 0 0 chr5 28134579 28134668 -124402591 + (TTC)n Simple_repeat Simple_repeat 3 91 0 2 799 1325 87 32 5 chr5 28134670 28134856 -124402403 - B2_Mm2 SINE B2 -4 191 1 2 799 249 101 0 0 chr5 28134856 28134896 -124402363 - Lx6 LINE L1 -3880 1997 1958 2 799 624 147 206 19 chr5 28134896 28135056 -124402203 + URR1B DNA MER1_type 2 191 -34 2 799 683 130 25 138 chr5 28135066 28135132 -124402127 - Lx6 LINE L1 -3923 1957 1903 2 799 852 138 6 110 chr5 28135132 28135295 -124401964 - B1_Mur2 SINE Alu 0 149 4 2 799 683 130 25 138 chr5 28135295 28135388 -124401871 - Lx6 LINE L1 -3978 1902 1816 2 799 285 29 0 0 chr5 28135388 28135422 -124401837 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 799 4326 194 101 20 chr5 28135435 28135798 -124401461 - RMER1A Other Other -13 1017 610 2 799 2847 132 85 14 chr5 28135798 28136290 -124400969 + RLTR11A2 LTR ERVK 1 527 0 2 799 4326 228 73 38 chr5 28136290 28137205 -124400054 - RMER1A Other Other -421 609 1 2 799 11634 143 21 17 chr5 28137229 28138549 -124398710 + Lx2 LINE L1 3421 4733 -1144 2 799 215 31 0 30 chr5 28138549 28138582 -124398677 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 799 11634 137 48 11 chr5 28138582 28140357 -124396902 + Lx2 LINE L1 4734 6936 -61 2 799 1435 35 6 11 chr5 28140397 28140571 -124396688 + B2_Mm1a SINE B2 2 174 -19 2 799 5780 171 17 8 chr5 28140578 28142223 -124395036 + Lx5 LINE L1 4999 6661 -389 2 799 1110 166 0 10 chr5 28142203 28142398 -124394861 + L1_Mur2 LINE L1 5258 5450 -427 2 799 355 216 28 3 chr5 28142382 28142488 -124394771 + Lx5 LINE L1 6663 6775 -283 2 799 2594 155 4 33 chr5 28142665 28143226 -124394033 + Lx5 LINE L1 5502 6055 -995 2 799 213 39 0 0 chr5 28143227 28143253 -124394006 + (TGGGGG)n Simple_repeat Simple_repeat 4 29 0 2 799 708 181 64 114 chr5 28143748 28144029 -124393230 - RMER17C LTR ERVK -62 348 82 2 799 477 88 54 21 chr5 28145581 28145674 -124391585 - RMER6A LTR ERVK -621 135 40 2 799 1801 202 150 53 chr5 28145948 28146092 -124391167 + RMER6C LTR ERVK 1 135 -555 2 799 1585 42 0 0 chr5 28146092 28146283 -124390976 - L1Md_T LINE L1 0 6582 6392 2 799 1801 202 150 53 chr5 28146283 28146765 -124390494 + RMER6C LTR ERVK 136 687 -3 2 799 2500 186 98 92 chr5 28146833 28147520 -124389739 + RMER6-int LTR ERVK 35 725 -2452 2 799 2199 39 0 0 chr5 28148493 28148785 -124388474 + L1_Mus1 LINE L1 6299 6567 0 2 799 1298 184 14 99 chr5 28149316 28149663 -124387596 + ORR1B1 LTR MaLR 4 357 -37 2 799 3134 142 27 8 chr5 28149680 28150199 -124387060 + Lx4A LINE L1 6528 7056 -2 2 799 718 299 88 34 chr5 28150344 28150956 -124386303 - L1_Mur3 LINE L1 -33 5847 5203 2 799 682 216 12 18 chr5 28150957 28151127 -124386132 + URR1A DNA MER1_type 58 226 0 2 799 364 238 30 0 chr5 28151139 28151240 -124386019 - L1M2 LINE L1 -892 5251 5148 2 799 450 53 0 0 chr5 28151372 28151429 -124385830 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 799 504 135 0 11 chr5 28151465 28151555 -124385704 - Lx9 LINE L1 -202 7442 7354 2 799 379 273 13 112 chr5 28151582 28151714 -124385545 - B1_Mur2 SINE Alu 0 127 6 2 799 253 261 49 35 chr5 28151794 28151937 -124385322 - L1_Rod LINE L1 -829 5018 4874 2 799 1680 169 9 63 chr5 28151939 28152286 -124384973 + ORR1A4 LTR MaLR 2 329 0 2 799 913 215 75 0 chr5 28152359 28152573 -124384686 + MTC LTR MaLR 22 251 -170 2 799 4618 194 55 16 chr5 28152573 28153469 -124383790 + MERVL_2A-int LTR ERVL 1638 2568 -3193 2 799 615 183 33 16 chr5 28153463 28153585 -124383674 - MERVL_2A-int LTR ERVL -3066 2695 2572 2 799 2243 215 106 78 chr5 28153599 28153984 -124383275 + MERVL_2A-int LTR ERVL 4936 5346 -415 2 799 1083 71 7 0 chr5 28153984 28154125 -124383134 + B1_Mus1 SINE Alu 1 142 -6 2 799 2243 215 106 78 chr5 28154125 28154467 -124382792 + MERVL_2A-int LTR ERVL 5347 5683 -78 2 799 362 155 23 35 chr5 28154467 28154554 -124382705 + ORR1A4-int LTR MaLR 552 637 -1326 2 799 273 103 0 0 chr5 28154556 28154595 -124382664 + MERVL-int LTR ERVL 5447 5485 0 2 799 6281 42 3 3 chr5 28155132 28155886 -124381373 + L1Md_F2 LINE L1 5829 6582 0 2 799 338 151 108 14 chr5 28156066 28156140 -124381119 + MT2B LTR ERVL 45 125 -476 2 799 239 260 18 88 chr5 28156401 28156515 -124380744 + RSINE1 SINE B4 60 165 0 2 799 507 208 168 0 chr5 28156515 28156640 -124380619 + B1_Mur1 SINE Alu 3 148 -1 2 799 266 67 22 0 chr5 28156779 28156824 -124380435 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2 799 225 0 0 0 chr5 28156933 28156958 -124380301 + (TATG)n Simple_repeat Simple_repeat 2 26 0 2 799 210 350 0 0 chr5 28156958 28157055 -124380204 + BC1_Mm scRNA scRNA 17 113 -39 2 799 748 129 52 0 chr5 28157455 28157571 -124379688 - B1_Mur4 SINE Alu -5 145 24 2 799 926 157 0 11 chr5 28157571 28157745 -124379514 + CT-rich Low_complexity Low_complexity 3 174 0 2 799 279 209 30 0 chr5 28157779 28157846 -124379413 + ORR1E LTR MaLR 3 71 -288 2 799 677 272 0 0 chr5 28157892 28158039 -124379220 - MTE2a LTR MaLR -21 358 212 2 799 505 235 13 183 chr5 28158135 28158359 -124378900 - MTE2a LTR MaLR -184 195 10 2 799 206 116 0 23 chr5 28158374 28158418 -124378841 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 2 799 544 227 16 8 chr5 28158427 28158556 -124378703 - B1_Mur4 SINE Alu -6 144 15 2 799 514 256 16 0 chr5 28158572 28158697 -124378562 - B1F SINE Alu 0 149 23 2 799 336 298 76 0 chr5 28159019 28159150 -124378109 + B1F2 SINE Alu 1 141 -8 2 799 250 188 78 0 chr5 28159222 28159286 -124377973 - MTE2b LTR MaLR 0 379 311 2 799 698 167 179 51 chr5 28159287 28159483 -124377776 + ORR1B1 LTR MaLR 1 287 -107 2 799 6320 141 49 76 chr5 28159515 28160897 -124376362 + ORR1B1-int LTR MaLR 619 1963 0 2 799 1915 134 33 55 chr5 28160904 28161266 -124375993 + ORR1B1 LTR MaLR 41 394 0 2 799 672 264 14 0 chr5 28161266 28161414 -124375845 - MTE2b LTR MaLR -65 314 165 2 799 336 48 0 0 chr5 28161419 28161461 -124375798 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 799 294 295 57 0 chr5 28161480 28161585 -124375674 - RSINE1 SINE B4 -54 111 1 3 799 679 230 2 178 chr5 28161585 28161807 -124375452 - MTE2b LTR MaLR -208 211 1 3 799 287 219 0 15 chr5 28162091 28162156 -124375103 - MLT1A LTR MaLR 0 408 345 3 799 244 265 29 14 chr5 28162233 28162302 -124374957 - ID4_ SINE ID -11 72 3 3 799 895 216 10 49 chr5 28162325 28162529 -124374730 - B3A SINE B2 -2 196 1 3 799 381 284 34 41 chr5 28162539 28162686 -124374573 - MLT1A LTR MaLR -225 149 4 3 799 235 254 55 0 chr5 28163457 28163512 -124373747 + ID_B1 SINE B4 87 144 -80 3 799 658 210 55 48 chr5 28164066 28164211 -124373048 - RSINE1 SINE B4 -18 147 2 3 799 1010 236 80 104 chr5 28164637 28165011 -124372248 - MTE2b LTR MaLR -14 365 1 3 799 293 242 15 0 chr5 28165257 28165323 -124371936 - ID_B1 SINE B4 -68 156 90 3 799 760 251 158 32 chr5 28165313 28165724 -124371535 - Charlie1 DNA MER1_type -107 2674 2212 3 799 444 304 28 28 chr5 28165728 28165870 -124371389 + RSINE1 SINE B4 3 144 -21 3 799 452 0 43 14 chr5 28165873 28165942 -124371317 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 799 262 258 99 8 chr5 28166050 28166171 -124371088 - Charlie1 DNA MER1_type -575 2206 2075 3 799 719 203 0 0 chr5 28166172 28166300 -124370959 + B3A SINE B2 1 128 -70 3 799 436 277 149 0 chr5 28166352 28166493 -124370766 - B3 SINE B2 -7 209 48 3 799 403 274 51 0 chr5 28166605 28166722 -124370537 - Charlie1 DNA MER1_type -849 1932 1810 3 799 450 0 0 0 chr5 28166937 28166987 -124370272 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 799 432 0 0 0 chr5 28166987 28167034 -124370225 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 799 513 325 108 0 chr5 28167035 28167201 -124370058 - B4 SINE B4 -32 260 77 3 799 322 250 12 24 chr5 28167318 28167400 -124369859 + ID4_ SINE ID 2 82 -1 3 799 21 0 0 0 chr5 28167448 28167469 -124369790 + AT_rich Low_complexity Low_complexity 1 21 0 3 799 501 225 27 0 chr5 28167475 28167586 -124369673 - PB1D9 SINE Alu -6 114 1 3 799 737 245 15 25 chr5 28167654 28167851 -124369408 - B3A SINE B2 0 198 4 3 799 207 100 0 0 chr5 28168058 28168088 -124369171 + (TTAG)n Simple_repeat Simple_repeat 1 30 0 3 799 822 86 0 0 chr5 28171349 28171465 -124365794 + (TTTC)n Simple_repeat Simple_repeat 2 117 0 3 799 484 226 130 62 chr5 28171678 28171824 -124365435 - RSINE1 SINE B4 0 165 10 3 799 716 204 62 114 chr5 28171862 28171901 -124365358 - B3 SINE B2 0 216 181 3 799 1094 123 0 11 chr5 28171901 28172082 -124365177 + (TATG)n Simple_repeat Simple_repeat 2 180 0 3 799 716 204 62 114 chr5 28172082 28172227 -124365032 - B3 SINE B2 -36 180 44 3 799 899 132 35 0 chr5 28172227 28172371 -124364888 - B1_Mur2 SINE Alu 0 149 1 3 799 716 204 62 114 chr5 28172371 28172412 -124364847 - B3 SINE B2 -173 43 2 3 799 624 227 76 0 chr5 28172957 28173076 -124364183 + B1_Mur2 SINE Alu 1 128 -21 3 799 1026 25 0 0 chr5 28173218 28173339 -124363920 + (GGGAGA)n Simple_repeat Simple_repeat 6 126 0 3 799 1056 252 122 9 chr5 28174519 28174855 -124362404 + MTD LTR MaLR 16 389 -30 3 799 249 130 0 0 chr5 28174855 28174890 -124362369 + (T)n Simple_repeat Simple_repeat 1 35 0 3 799 1188 48 14 0 chr5 28174890 28175035 -124362224 - B1_Mus2 SINE Alu 0 147 1 3 799 249 130 0 0 chr5 28175035 28175053 -124362206 + (T)n Simple_repeat Simple_repeat 1 18 0 3 799 30 0 0 0 chr5 28175216 28175246 -124362013 + AT_rich Low_complexity Low_complexity 1 30 0 3 799 515 252 0 10 chr5 28175384 28175488 -124361771 - RSINE1 SINE B4 -60 105 3 3 799 304 270 67 48 chr5 28175771 28175876 -124361383 + Tigger5 DNA MER2_type 106 212 -2194 3 799 883 269 162 9 chr5 28175989 28176299 -124360960 - MTEa LTR MaLR -2 377 45 3 799 1041 259 15 158 chr5 28176325 28176566 -124360693 - MTD LTR MaLR -14 405 213 3 799 925 181 166 0 chr5 28176566 28176759 -124360500 - URR1B DNA MER1_type 0 225 1 3 799 1041 257 15 166 chr5 28176759 28177001 -124360258 - MTD LTR MaLR -207 212 6 3 799 387 314 8 55 chr5 28177986 28178003 -124359256 + ID_B1 SINE B4 80 200 -23 3 799 474 266 27 9 chr5 28178003 28178113 -124359146 + B1F1 SINE Alu 11 122 -27 3 799 401 191 9 0 chr5 28178359 28178469 -124358790 + CT-rich Low_complexity Low_complexity 2 112 0 3 799 623 224 27 82 chr5 28179347 28179493 -124357766 - B1_Mur2 SINE Alu -9 140 3 3 799 294 29 0 0 chr5 28180126 28180161 -124357098 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 800 567 264 25 73 chr5 28180721 28180925 -124356334 + B3A SINE B2 4 197 -1 3 800 808 231 87 0 chr5 28180954 28181149 -124356110 - B3 SINE B2 -4 212 1 3 800 21 0 0 0 chr5 28181603 28181624 -124355635 + AT_rich Low_complexity Low_complexity 1 21 0 3 800 715 243 52 6 chr5 28181630 28181804 -124355455 - B3A SINE B2 -16 182 1 3 800 206 81 0 26 chr5 28182989 28183027 -124354232 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 800 778 224 63 187 chr5 28183054 28183111 -124354148 + MTE2a LTR MaLR 1 46 -333 3 800 393 22 0 0 chr5 28183111 28183157 -124354102 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 800 755 190 0 35 chr5 28183158 28183300 -124353959 - B1_Mur1 SINE Alu -8 141 5 3 800 778 224 63 187 chr5 28183300 28183587 -124353672 + MTE2a LTR MaLR 47 304 -75 3 800 428 204 0 11 chr5 28185781 28185875 -124351384 - PB1D9 SINE Alu -1 119 27 3 800 922 133 20 13 chr5 28186116 28186268 -124350991 - URR1B DNA MER1_type 0 225 73 3 800 643 216 26 0 chr5 28187674 28187790 -124349469 + B1_Mm SINE Alu 13 131 -16 3 800 9610 116 26 19 chr5 28187792 28189237 -124348022 + Lx4A LINE L1 5603 7057 -1 3 800 339 250 12 24 chr5 28189418 28189500 -124347759 + PB1D10 SINE Alu 8 88 -29 3 800 392 267 21 32 chr5 28189986 28190079 -124347180 - ID_B1 SINE B4 -21 203 112 3 800 3236 48 5 12 chr5 28190143 28190542 -124346717 + MTA_Mm LTR MaLR 1 396 0 3 800 299 132 33 54 chr5 28190903 28191087 -124346172 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 800 197 82 39 39 chr5 28191127 28191178 -124346081 + (ATGTG)n Simple_repeat Simple_repeat 4 54 0 3 800 347 123 18 0 chr5 28191182 28191239 -124346020 - HAL1-3A_ME LINE L1 -840 2018 1961 3 800 837 301 40 26 chr5 28191244 28191517 -124345742 - B4A SINE B4 -8 284 8 3 800 240 111 0 0 chr5 28191991 28192027 -124345232 + (TTA)n Simple_repeat Simple_repeat 1 36 0 3 800 364 241 12 12 chr5 28192406 28192486 -124344773 - ID_B1 SINE B4 -15 209 130 3 800 34672 67 25 14 chr5 28192487 28198516 -124338743 - L1Md_F2 LINE L1 -12 6570 469 3 800 527 298 20 13 chr5 28198517 28198670 -124338589 - ID_B1 SINE B4 -68 156 3 3 800 876 225 21 5 chr5 28200590 28200778 -124336481 - B3A SINE B2 -6 192 2 3 800 329 277 39 19 chr5 28200800 28200903 -124336356 - B3 SINE B2 -1 215 111 3 800 304 217 51 130 chr5 28200933 28201071 -124336188 - L1MA5 LINE L1 -28 6272 6146 3 800 550 248 43 0 chr5 28201199 28201340 -124335919 - B1_Mur3 SINE Alu -2 147 1 3 800 268 211 32 135 chr5 28201232 28201358 -124335901 - MT2B LTR ERVL -337 264 152 3 800 554 323 44 12 chr5 28201358 28201609 -124335650 - L1MA5 LINE L1 -423 5877 5619 3 800 756 33 0 0 chr5 28201731 28201822 -124335437 + (TCCC)n Simple_repeat Simple_repeat 4 94 0 3 800 383 256 0 0 chr5 28202305 28202391 -124334868 + B3 SINE B2 1 86 -130 3 800 381 229 11 46 chr5 28202473 28202560 -124334699 + RSINE1 SINE B4 82 165 0 3 800 2802 87 71 12 chr5 28202593 28202999 -124334260 - RLTR23 LTR ERV1 0 430 1 3 800 431 279 148 30 chr5 28203105 28203375 -124333884 - Lx8 LINE L1 -17 7456 7155 3 800 21 0 0 0 chr5 28203389 28203410 -124333849 + AT_rich Low_complexity Low_complexity 1 21 0 3 800 1002 241 125 21 chr5 28203413 28203773 -124333486 + Lx7 LINE L1 7000 7549 -147 3 800 189 0 0 0 chr5 28203773 28203794 -124333465 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 800 333 246 143 46 chr5 28203794 28203903 -124333356 + Lx7 LINE L1 7550 7674 -22 3 800 709 231 143 0 chr5 28203903 28204085 -124333174 + B3 SINE B2 1 208 -8 3 800 1454 264 85 57 chr5 28204162 28204704 -124332555 - Lx8 LINE L1 -94 7379 6823 3 800 188 330 144 0 chr5 28204815 28204912 -124332347 + L2a LINE L2 3309 3419 -7 3 800 421 164 27 0 chr5 28205396 28205469 -124331790 + B3A SINE B2 1 75 -123 3 800 698 228 119 5 chr5 28205645 28205830 -124331429 - ID_B1 SINE B4 -17 207 2 3 800 270 339 55 0 chr5 28205835 28205962 -124331297 - L1M4 LINE L1 -1098 5048 4915 3 800 364 281 44 52 chr5 28206123 28206258 -124331001 + MLT1A1 LTR MaLR 270 403 -5 3 800 2135 207 107 30 chr5 28206455 28206987 -124330272 - RLTR20B3 LTR ERVK -4 573 1 3 800 182 37 37 0 chr5 28208330 28208357 -124328902 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 800 465 255 27 36 chr5 28208375 28208485 -124328774 - RSINE1 SINE B4 -4 161 53 3 800 5931 80 5 83 chr5 28208482 28209407 -124327852 - MTB-int LTR MaLR -245 853 1 3 800 330 49 0 0 chr5 28209407 28209448 -124327811 - MTB LTR MaLR 0 400 360 3 800 275 218 49 49 chr5 28209443 28209525 -124327734 - RLTR9A LTR ERVK -286 82 1 3 800 3030 142 75 1 chr5 28209525 28210249 -124327010 - MERVL_2A-int LTR ERVL -754 5007 4231 3 800 11156 159 45 30 chr5 28210921 28211805 -124325454 - MERVL-int LTR ERVL -3431 2054 1142 3 800 1083 89 0 0 chr5 28211805 28211940 -124325319 + B1_Mm SINE Alu 3 137 -10 3 800 261 0 0 0 chr5 28211940 28211969 -124325290 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 800 11156 159 45 30 chr5 28211969 28213101 -124324158 - MERVL-int LTR ERVL -4344 1141 7 3 800 1970 168 72 22 chr5 28213101 28213526 -124323733 - MT2B LTR ERVL -12 589 1 3 800 675 267 142 14 chr5 28213555 28213566 -124323693 - L1MC3 LINE L1 -170 7615 7605 3 800 1135 194 5 5 chr5 28213566 28213773 -124323486 - B3 SINE B2 -9 207 1 3 800 675 267 142 14 chr5 28213773 28214042 -124323217 - L1MC3 LINE L1 -181 7604 7299 3 800 702 227 17 6 chr5 28214115 28214292 -124322967 + L1_Mur3 LINE L1 4444 4622 -1258 3 800 2080 168 31 8 chr5 28214292 28214677 -124322582 - ORR1B1 LTR MaLR 0 394 1 3 800 1088 287 80 6 chr5 28215638 28215950 -124321309 + ORR1D2 LTR MaLR 1 335 -35 3 800 271 163 20 0 chr5 28217027 28217076 -124320183 + (CTG)n Simple_repeat Simple_repeat 3 52 0 4 800 420 156 7 15 chr5 28217576 28217673 -124319586 - B1_Mur4 SINE Alu -16 104 10 4 800 453 50 0 0 chr5 28217671 28217731 -124319528 + B1_Mm SINE Alu 88 147 0 4 800 252 0 0 0 chr5 28217731 28217759 -124319500 + (CAA)n Simple_repeat Simple_repeat 3 30 0 4 800 802 306 53 35 chr5 28217842 28218184 -124319075 + RodERV21-int LTR ERV1 806 1153 -3838 4 800 250 245 0 0 chr5 28218673 28218726 -124318533 + MLT1A1 LTR MaLR 299 351 -57 4 800 1724 185 42 32 chr5 28218896 28219210 -124318049 - MTC LTR MaLR 0 421 74 4 800 781 188 14 7 chr5 28219210 28219355 -124317904 + B1_Mus2 SINE Alu 1 146 -1 4 800 657 307 48 85 chr5 28219355 28219392 -124317867 - MTC LTR MaLR -306 73 41 4 800 716 250 15 0 chr5 28219393 28219529 -124317730 + B3 SINE B2 79 216 0 4 800 984 103 170 0 chr5 28219553 28219718 -124317541 + B2_Mm2 SINE B2 1 193 -2 4 800 4748 41 0 4 chr5 28220515 28221119 -124316140 + L1Md_F2 LINE L1 6025 6582 0 4 800 405 309 68 58 chr5 28221298 28221504 -124315755 - MLT1N2 LTR MaLR -352 210 3 4 800 347 0 0 23 chr5 28222429 28222473 -124314786 + (TGG)n Simple_repeat Simple_repeat 3 45 0 4 800 306 0 0 0 chr5 28222474 28222508 -124314751 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 800 462 280 104 0 chr5 28222509 28222634 -124314625 - RSINE1 SINE B4 -24 141 4 4 800 344 343 44 0 chr5 28223279 28223416 -124313843 + B4A SINE B4 1 143 -149 4 800 340 240 116 65 chr5 28223444 28223582 -124313677 - MLT1F2 LTR MaLR -415 145 1 4 800 387 0 0 0 chr5 28224067 28224110 -124313149 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 800 189 171 0 0 chr5 28224334 28224369 -124312890 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 800 339 336 9 17 chr5 28224466 28224581 -124312678 + Tigger5 DNA MER2_type 7 120 -2286 4 800 277 224 25 25 chr5 28224645 28224764 -124312495 + (TCTG)n Simple_repeat Simple_repeat 1 119 0 4 800 352 212 58 12 chr5 28226268 28226354 -124310905 - B3 SINE B2 -6 210 121 4 800 271 185 19 0 chr5 28226982 28227036 -124310223 - B3 SINE B2 -106 110 56 4 800 291 157 0 0 chr5 28227501 28227552 -124309707 - B3A SINE B2 -147 51 1 4 800 1859 62 20 0 chr5 28229153 28229397 -124307862 - MusHAL1 LINE L1 -60 2652 2404 4 800 2461 104 8 5 chr5 28229453 28229838 -124307421 + LTRIS4 LTR ERV1 122 507 0 4 800 3660 94 25 9 chr5 28229838 28229963 -124307296 - MusHAL1 LINE L1 -299 2413 2278 4 800 225 0 0 0 chr5 28229963 28229988 -124307271 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 800 3660 94 25 9 chr5 28229988 28230412 -124306847 - MusHAL1 LINE L1 -435 2277 1855 4 800 213 269 71 12 chr5 28230699 28230826 -124306433 + MIR SINE MIR 62 190 -72 4 800 405 58 0 0 chr5 28230856 28230908 -124306351 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 800 423 244 9 9 chr5 28231108 28231224 -124306035 + MLT1A1 LTR MaLR 291 406 -2 4 800 2074 45 0 0 chr5 28231226 28231470 -124305789 + L1Md_F2 LINE L1 5342 5585 -298 4 800 8442 40 0 0 chr5 28231471 28232458 -124304801 + L1Md_F2 LINE L1 5587 6573 -9 4 800 370 224 151 9 chr5 28232474 28232686 -124304573 + L1M5 LINE L1 4308 4549 -1597 4 800 398 253 110 47 chr5 28232696 28232715 -124304544 - B4A SINE B4 -46 246 176 4 800 879 150 7 0 chr5 28232715 28232855 -124304404 - B1_Mur4 SINE Alu -7 143 3 4 800 398 253 110 47 chr5 28232855 28232887 -124304372 - B4A SINE B4 -46 175 44 4 800 420 153 55 14 chr5 28232895 28232968 -124304291 - ID4_ SINE ID -7 76 1 4 800 414 121 0 0 chr5 28233877 28233943 -124303316 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 800 305 290 78 29 chr5 28233949 28234052 -124303207 + B4A SINE B4 3 110 -182 4 800 224 346 64 0 chr5 28234132 28234210 -124303049 + RSINE1 SINE B4 79 161 -4 4 800 225 286 0 0 chr5 28234215 28234278 -124302981 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 800 973 245 20 53 chr5 28234590 28234889 -124302370 + B4 SINE B4 12 292 0 4 800 450 36 0 0 chr5 28235880 28235936 -124301323 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 800 32947 69 8 1 chr5 28236220 28241355 -124295904 + L1Md_F2 LINE L1 415 5586 -297 4 800 8373 32 12 0 chr5 28241355 28242327 -124294932 + L1Md_F2 LINE L1 5587 6570 -12 4 800 2498 62 3 3 chr5 28242329 28242654 -124294605 + L1Md_F2 LINE L1 6258 6582 0 4 800 752 219 51 5 chr5 28242755 28242952 -124294307 - MTEb LTR MaLR -5 374 169 4 800 367 323 56 56 chr5 28242988 28243185 -124294074 - B3A SINE B2 -1 197 1 4 800 1116 194 149 26 chr5 28243194 28243544 -124293715 + MTD LTR MaLR 13 405 -14 4 800 291 233 86 62 chr5 28243687 28243815 -124293444 - L1MEf LINE L1 -4705 1495 1365 4 800 1578 53 0 0 chr5 28243980 28244169 -124293090 - L1_Mus1 LINE L1 -685 5882 5694 4 800 6028 68 4 0 chr5 28244169 28244918 -124292341 + L1_Mus1 LINE L1 5816 6567 0 4 800 536 186 9 0 chr5 28244918 28245031 -124292228 + GA-rich Low_complexity Low_complexity 1 114 0 4 800 456 297 136 22 chr5 28245188 28245453 -124291806 - RMER20B LTR ERVK -142 485 168 4 800 413 161 49 88 chr5 28246306 28246408 -124290851 - B1_Mur1 SINE Alu -8 141 44 4 800 315 0 0 0 chr5 28246844 28246879 -124290380 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 4 800 225 0 0 0 chr5 28246879 28246904 -124290355 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 800 4829 144 29 37 chr5 28246904 28247832 -124289427 + L1_Mur3 LINE L1 4378 5298 -582 4 800 1851 189 35 33 chr5 28247835 28248234 -124289025 + MTB_Mm LTR MaLR 1 400 -7 4 800 2231 153 55 5 chr5 28248241 28248641 -124288618 + L1_Mur3 LINE L1 5297 5716 -164 4 800 32802 94 7 4 chr5 28248650 28254116 -124283143 - L1_Mus1 LINE L1 -3 6651 1070 4 800 1221 77 12 0 chr5 28254116 28254286 -124282973 + L1_Mus1 LINE L1 6395 6566 -1 4 800 4224 168 70 23 chr5 28254286 28254983 -124282276 - L1_Mus1 LINE L1 -5547 1069 355 4 800 810 259 95 51 chr5 28254973 28255228 -124282031 - L1MEg LINE L1 -1145 5001 4721 4 800 1364 82 16 0 chr5 28255228 28255410 -124281849 - B2_Mm1t SINE B2 -8 185 1 4 800 810 259 95 51 chr5 28255410 28255545 -124281714 - L1MEg LINE L1 -1426 4720 4594 4 800 944 157 6 0 chr5 28255545 28255711 -124281548 - RMER16 LTR ERVK 0 533 367 4 800 508 144 20 10 chr5 28255711 28255809 -124281450 - RMER16 LTR ERVK -434 99 1 4 800 284 198 180 0 chr5 28255832 28255943 -124281316 - L1M2 LINE L1 -1559 4584 4454 4 800 710 247 73 5 chr5 28256097 28256288 -124280971 + Lx8 LINE L1 6887 7090 -383 4 800 596 257 71 29 chr5 28256609 28256885 -124280374 - L1MA4A LINE L1 -1126 5932 5681 4 800 239 262 57 100 chr5 28256932 28257072 -124280187 - RLTR41 LTR ERV1 -62 384 251 4 800 270 211 103 21 chr5 28257689 28257786 -124279473 - L1MEg LINE L1 -4685 1557 1453 4 800 950 266 43 36 chr5 28258008 28258226 -124279033 + B4 SINE B4 2 213 -79 4 800 297 0 0 0 chr5 28258226 28258259 -124279000 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 4 800 950 266 43 36 chr5 28258259 28258317 -124278942 + B4 SINE B4 214 279 -13 4 800 405 323 24 0 chr5 28258591 28258718 -124278541 - B1F SINE Alu -8 141 12 4 800 306 320 67 49 chr5 28258718 28258755 -124278504 - ID_B1 SINE B4 -8 216 50 4 800 440 323 0 0 chr5 28258845 28258975 -124278284 + MTE2b LTR MaLR 20 149 -230 4 800 252 264 13 65 chr5 28259173 28259250 -124278009 + ID4_ SINE ID 2 74 -9 4 800 924 179 54 5 chr5 28259187 28259372 -124277887 + B3 SINE B2 13 206 -10 4 800 994 67 82 0 chr5 28259382 28259516 -124277743 + B1_Mus1 SINE Alu 2 146 -2 4 800 468 0 0 0 chr5 28259516 28259568 -124277691 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 800 333 0 0 0 chr5 28259568 28259604 -124277655 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 800 389 227 109 0 chr5 28259635 28259763 -124277496 - L1MA8 LINE L1 -32 6259 6118 4 800 742 197 14 0 chr5 28259901 28260043 -124277216 - B1_Mus1 SINE Alu -1 147 4 4 800 1050 190 80 0 chr5 28260071 28260271 -124276988 - B3 SINE B2 0 216 1 4 800 830 243 69 124 chr5 28260337 28260699 -124276560 - MTE2b LTR MaLR -2 377 36 4 800 24 91 0 0 chr5 28260736 28260802 -124276457 + AT_rich Low_complexity Low_complexity 1 66 0 4 800 306 0 0 0 chr5 28260840 28260874 -124276385 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 800 473 275 70 28 chr5 28260875 28261017 -124276242 - B1F1 SINE Alu -1 148 1 4 800 488 336 7 0 chr5 28261073 28261216 -124276043 + ID_B1 SINE B4 71 214 -10 4 800 543 291 48 0 chr5 28261202 28261367 -124275892 + ID_B1 SINE B4 51 223 -1 4 800 886 189 200 0 chr5 28261761 28261941 -124275318 + B3 SINE B2 1 216 0 4 800 850 178 203 11 chr5 28262177 28262364 -124274895 - URR1B DNA MER1_type 0 225 3 4 800 5469 35 0 0 chr5 28262644 28263279 -124273980 - L1Md_T LINE L1 0 6582 5948 4 800 396 40 0 0 chr5 28263306 28263356 -124273903 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 800 405 0 0 0 chr5 28263356 28263400 -124273859 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 800 338 265 104 40 chr5 28263996 28264169 -124273090 - Charlie21a DNA MER1_type -806 407 224 4 800 2055 134 86 3 chr5 28264434 28264785 -124272474 + RLTR14 LTR ERV1 1 380 -2 4 800 528 16 0 0 chr5 28264994 28265055 -124272204 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 800 320 348 54 0 chr5 28265078 28265190 -124272069 - RSINE1 SINE B4 -46 119 2 4 800 324 0 0 0 chr5 28265321 28265357 -124271902 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 800 487 344 0 7 chr5 28265359 28265514 -124271745 - RSINE1 SINE B4 -10 155 2 4 800 27 29 0 0 chr5 28265518 28265552 -124271707 + AT_rich Low_complexity Low_complexity 1 34 0 4 800 1758 212 64 2 chr5 28266432 28266825 -124270434 + MTD LTR MaLR 3 419 0 4 800 1039 222 0 0 chr5 28267195 28267411 -124269848 - B3 SINE B2 0 216 1 4 800 30 27 0 0 chr5 28267431 28267468 -124269791 + AT_rich Low_complexity Low_complexity 1 37 0 4 800 404 298 54 39 chr5 28267478 28267607 -124269652 - RSINE1 SINE B4 0 165 35 4 800 459 0 0 0 chr5 28267621 28267672 -124269587 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 800 590 283 122 5 chr5 28267673 28267886 -124269373 - B4 SINE B4 -35 257 20 4 800 845 11 0 0 chr5 28268893 28268984 -124268275 + L1Md_A LINE L1 5496 5586 -297 4 800 9130 7 0 0 chr5 28268984 28269980 -124267279 + L1Md_A LINE L1 5587 6582 0 4 800 5463 111 47 8 chr5 28270514 28271366 -124265893 + RMER17D LTR ERVK 3 887 -2 5 800 1619 136 4 0 chr5 28276781 28277038 -124260221 + L1_Mm LINE L1 3814 4071 -1812 5 800 4969 85 35 1 chr5 28277038 28277722 -124259537 + L1_Mus2 LINE L1 5858 6564 -2 5 800 838 254 47 0 chr5 28277761 28277954 -124259305 + B3 SINE B2 7 208 -8 5 800 394 44 132 0 chr5 28278561 28278652 -124258607 + (AGTTG)n Simple_repeat Simple_repeat 1 103 0 5 800 652 193 89 0 chr5 28278966 28279101 -124258158 + B1_Mur2 SINE Alu 2 148 -1 5 800 234 243 0 28 chr5 28279107 28279213 -124258046 + GA-rich Low_complexity Low_complexity 2 104 0 5 800 449 244 67 46 chr5 28279597 28279840 -124257419 - L1M5 LINE L1 -685 5555 5313 5 800 435 287 45 26 chr5 28279856 28280010 -124257249 - RSINE1 SINE B4 0 165 9 5 800 237 274 0 0 chr5 28280133 28280195 -124257064 - L1M5 LINE L1 -1127 5019 4958 5 800 468 0 0 0 chr5 28280289 28280341 -124256918 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 800 27 29 0 0 chr5 28280374 28280408 -124256851 + AT_rich Low_complexity Low_complexity 1 34 0 5 800 281 302 79 8 chr5 28280412 28280539 -124256720 - B1F SINE Alu -12 137 2 5 800 507 17 0 0 chr5 28280720 28280780 -124256479 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 800 591 281 7 0 chr5 28280784 28280930 -124256329 - B3A SINE B2 -50 148 2 5 800 633 115 0 0 chr5 28281052 28281148 -124256111 + (GA)n Simple_repeat Simple_repeat 1 96 0 5 800 210 254 136 0 chr5 28281172 28281231 -124256028 - RSINE1 SINE B4 -97 68 2 5 800 252 0 0 0 chr5 28281276 28281304 -124255955 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 800 344 243 0 14 chr5 28281308 28281379 -124255880 - ID4 SINE ID -12 71 2 5 800 446 232 118 118 chr5 28281537 28281937 -124255322 - L1MC5 LINE L1 -173 7788 7389 5 800 311 275 137 26 chr5 28281943 28282096 -124255163 + Lx8 LINE L1 7291 7460 -13 5 800 306 73 0 0 chr5 28282663 28282704 -124254555 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 5 800 4716 80 2 5 chr5 28282707 28283445 -124253814 - L1_Mus2 LINE L1 0 6566 5956 5 800 768 130 12 39 chr5 28283446 28283626 -124253633 - L1_Mus2 LINE L1 0 6638 6427 5 800 29372 80 16 11 chr5 28283620 28284311 -124252948 - L1_Mus2 LINE L1 -600 5966 5156 5 800 534 104 0 0 chr5 28284311 28284407 -124252852 + (TA)n Simple_repeat Simple_repeat 1 96 0 5 800 572 96 21 0 chr5 28284408 28284502 -124252757 - B1_Mus1 SINE Alu -50 98 3 5 800 251 186 0 63 chr5 28284448 28284511 -124252748 - B4A SINE B4 -152 140 82 5 800 29372 107 35 24 chr5 28284502 28288425 -124248834 - L1_Mus2 LINE L1 -728 5154 1204 5 800 222 304 0 0 chr5 28288426 28288472 -124248787 - RSINE1 SINE B4 -118 47 2 5 800 283 352 11 0 chr5 28288618 28288709 -124248550 + RSINE1 SINE B4 41 132 -33 5 800 423 68 0 0 chr5 28288722 28288781 -124248478 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 800 423 323 23 15 chr5 28288812 28288944 -124248315 - RSINE1 SINE B4 -31 134 2 5 800 31 26 0 0 chr5 28288944 28288982 -124248277 + AT_rich Low_complexity Low_complexity 1 38 0 5 800 1673 215 66 5 chr5 28289871 28290263 -124246996 + MTD LTR MaLR 3 418 -1 5 800 992 244 0 5 chr5 28290634 28290848 -124246411 - B3 SINE B2 -3 213 1 5 800 363 23 0 0 chr5 28290886 28290930 -124246329 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5 800 1092 65 0 0 chr5 28290937 28291075 -124246184 - B1_Mm SINE Alu -8 139 2 5 800 323 327 61 43 chr5 28291095 28291210 -124246049 - RSINE1 SINE B4 -13 152 36 5 800 402 79 0 0 chr5 28291222 28291285 -124245974 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 800 297 0 0 0 chr5 28291285 28291318 -124245941 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 800 474 204 97 0 chr5 28291319 28291432 -124245827 - B4 SINE B4 -35 257 134 5 800 7616 80 12 4 chr5 28291562 28293177 -124244082 - L1_Mus1 LINE L1 0 6567 4942 5 800 229 278 0 0 chr5 28303798 28303852 -124233407 + CT-rich Low_complexity Low_complexity 1 54 0 5 800 935 306 36 22 chr5 28303922 28304286 -124232973 + RodERV21-int LTR ERV1 4425 4793 -198 5 800 378 0 0 0 chr5 28304461 28304503 -124232756 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 800 28928 95 27 6 chr5 28304706 28306152 -124231107 - L1_Mus3 LINE L1 -12 6626 5114 5 800 1315 105 0 16 chr5 28306152 28306345 -124230914 - B2_Mm2 SINE B2 -5 190 1 5 800 28928 119 34 6 chr5 28306345 28306732 -124230527 - L1_Mus3 LINE L1 -770 5113 4726 5 800 180 0 0 0 chr5 28306732 28306752 -124230507 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 800 28928 121 42 7 chr5 28306752 28310803 -124226456 - L1_Mus3 LINE L1 -1158 4725 560 5 800 1977 183 104 2 chr5 28310802 28311224 -124226035 + Lx7 LINE L1 5703 6167 -1529 5 800 359 190 37 25 chr5 28311234 28311315 -124225944 - Lx6 LINE L1 -10 7450 7369 5 12 854 259 122 62 chr5 28311315 28311734 -124225525 - RLTR31_Mur LTR ERVK -7 546 103 5 801 4496 16 0 0 chr5 28311734 28312227 -124225032 - MT2_Mm LTR ERVL 0 493 1 5 801 321 0 0 0 chr5 28312227 28312265 -124224994 - MERVL-int LTR ERVL 0 5485 5448 5 801 362 167 46 35 chr5 28312265 28312352 -124224907 - ORR1A3-int LTR MaLR -1323 640 553 5 801 12787 26 1 0 chr5 28312352 28313787 -124223472 - MERVL-int LTR ERVL -125 5360 3925 5 801 32314 10 0 5 chr5 28313779 28317320 -124219939 - MERVL-int LTR ERVL -1962 3523 1 5 801 4525 14 0 0 chr5 28317320 28317813 -124219446 - MT2_Mm LTR ERVL 0 493 1 5 801 188 35 35 0 chr5 28317830 28317859 -124219400 + (CCCTA)n Simple_repeat Simple_repeat 1 30 0 5 801 240 246 0 0 chr5 28317859 28317928 -124219331 + CT-rich Low_complexity Low_complexity 2 70 0 5 801 7445 205 50 29 chr5 28318053 28319649 -124217610 - Lx6 LINE L1 -89 7371 5744 5 801 3860 170 125 3 chr5 28319655 28319988 -124217271 + Lx7 LINE L1 6514 6904 -792 5 801 221 0 35 0 chr5 28319988 28320017 -124217242 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 801 3860 170 125 3 chr5 28320017 28320384 -124216875 + Lx7 LINE L1 6905 7305 -391 5 801 405 0 0 0 chr5 28320384 28320429 -124216830 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 801 3860 170 125 3 chr5 28320429 28320470 -124216789 + Lx7 LINE L1 7306 7346 -350 5 801 253 236 0 18 chr5 28320591 28320647 -124216612 + CT-rich Low_complexity Low_complexity 5 59 0 5 801 835 249 88 3 chr5 28320685 28320979 -124216280 + Lx7 LINE L1 7378 7696 0 5 801 241 260 139 10 chr5 28322494 28322595 -124214664 + B3 SINE B2 18 131 -85 5 801 558 241 173 26 chr5 28322772 28322998 -124214261 + RMER5 LTR ERV1 229 487 -47 5 801 525 104 0 0 chr5 28323139 28323216 -124214043 + (GGGA)n Simple_repeat Simple_repeat 2 78 0 5 801 242 328 53 8 chr5 28323416 28323548 -124213711 - RMER15 LTR ERVL -14 561 424 5 801 372 177 30 30 chr5 28323530 28323629 -124213630 - ORR1D2 LTR MaLR -235 139 41 5 801 924 233 60 82 chr5 28323914 28324232 -124213027 - MTE2a LTR MaLR -17 362 52 5 801 432 0 0 0 chr5 28324844 28324892 -124212367 + (GA)n Simple_repeat Simple_repeat 2 49 0 5 801 445 102 227 0 chr5 28325402 28325490 -124211769 + MTB_Mm LTR MaLR 3 110 -297 5 801 372 246 43 151 chr5 28325615 28325682 -124211577 - ID_B1 SINE B4 -9 215 152 5 801 633 231 37 0 chr5 28325682 28325816 -124211443 - B1_Mur3 SINE Alu -6 143 5 5 801 372 206 13 90 chr5 28325816 28325904 -124211355 - ID_B1 SINE B4 -73 151 83 5 801 299 283 50 20 chr5 28325908 28326009 -124211250 - PB1D9 SINE Alu -15 105 2 5 801 1972 86 3 35 chr5 28327955 28328268 -124208991 + MTB LTR MaLR 98 400 0 5 801 451 325 6 12 chr5 28328309 28328471 -124208788 + (TATG)n Simple_repeat Simple_repeat 2 162 0 5 801 350 290 0 6 chr5 28328488 28328644 -124208615 + (TATG)n Simple_repeat Simple_repeat 1 155 0 5 801 347 361 7 0 chr5 28328690 28328845 -124208414 + (TATG)n Simple_repeat Simple_repeat 3 158 0 5 801 641 256 37 131 chr5 28330263 28330560 -124206699 + MTE2a LTR MaLR 20 288 -91 5 801 261 200 233 0 chr5 28331522 28331582 -124205677 + 5S rRNA rRNA 17 90 -31 5 801 1618 211 59 18 chr5 28333382 28333719 -124203540 - MTE2b LTR MaLR -13 366 16 5 801 1049 104 0 0 chr5 28334699 28334833 -124202426 + B1_Mus2 SINE Alu 1 134 -13 5 801 236 53 0 26 chr5 28334833 28334872 -124202387 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 5 801 193 102 20 39 chr5 28334941 28334992 -124202267 + A-rich Low_complexity Low_complexity 1 50 0 5 801 687 321 81 76 chr5 28336349 28336878 -124200381 - RMER5 LTR ERV1 0 534 3 5 801 322 290 0 98 chr5 28337343 28337496 -124199763 - MLT1C LTR MaLR -270 197 60 5 801 465 296 0 9 chr5 28338047 28338062 -124199197 - ID_B1 SINE B4 -24 200 86 5 801 573 198 30 0 chr5 28338062 28338163 -124199096 - B1F2 SINE Alu -41 108 5 5 801 471 35 0 0 chr5 28338172 28338229 -124199030 + (CCAA)n Simple_repeat Simple_repeat 2 58 0 5 801 207 0 0 0 chr5 28339520 28339543 -124197716 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 801 593 292 30 36 chr5 28339582 28339749 -124197510 + B3 SINE B2 26 191 -25 5 801 700 224 42 0 chr5 28339772 28339915 -124197344 + B1_Mur2 SINE Alu 1 149 0 5 801 311 111 74 0 chr5 28340848 28340902 -124196357 - RMER6C LTR ERVK -429 261 204 5 801 1027 95 6 0 chr5 28341270 28341439 -124195820 - Lx3_Mus LINE L1 0 7009 6840 5 801 1617 143 181 12 chr5 28341442 28341501 -124195758 + RMER6C LTR ERVK 310 397 -293 5 801 185 132 26 0 chr5 28341501 28341539 -124195720 + (CAGTG)n Simple_repeat Simple_repeat 2 40 0 5 801 1617 143 181 12 chr5 28341539 28341805 -124195454 + RMER6C LTR ERVK 398 690 0 5 801 508 248 57 0 chr5 28342199 28342304 -124194955 + ID_B1 SINE B4 88 198 -26 5 801 349 250 13 38 chr5 28342336 28342415 -124194844 + ID_B1 SINE B4 144 220 -4 5 801 617 251 12 33 chr5 28343273 28343426 -124193833 - ID_B1 SINE B4 -70 222 79 5 801 486 0 0 0 chr5 28343426 28343480 -124193779 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 801 307 311 62 137 chr5 28343480 28343562 -124193697 - B4 SINE B4 -212 80 13 5 801 423 0 0 0 chr5 28344241 28344288 -124192971 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 801 803 165 8 0 chr5 28344920 28345047 -124192212 + B1_Mur3 SINE Alu 2 129 -20 5 801 2227 171 23 10 chr5 28345048 28345437 -124191822 + ORR1B1 LTR MaLR 1 394 0 5 801 424 200 19 0 chr5 28345479 28345584 -124191675 + GA-rich Low_complexity Low_complexity 2 108 0 5 801 429 216 52 0 chr5 28345668 28345765 -124191494 - Lx8 LINE L1 -368 7105 7004 5 801 343 176 0 68 chr5 28345837 28345910 -124191349 - RMER21A LTR ERV1 -485 462 395 5 801 1575 187 119 117 chr5 28345919 28345949 -124191310 - RMER21A LTR ERV1 -450 497 459 5 801 2496 94 15 3 chr5 28345949 28346289 -124190970 - ORR1A1 LTR MaLR -2 344 1 5 801 1575 187 119 117 chr5 28346289 28346754 -124190505 - RMER21A LTR ERV1 -489 458 1 5 801 706 203 37 8 chr5 28346773 28346907 -124190352 - ID_B1 SINE B4 0 224 87 5 801 210 71 0 0 chr5 28346916 28346944 -124190315 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 801 322 289 11 0 chr5 28347738 28347828 -124189431 - L1MA6 LINE L1 -23 6277 6187 6 801 286 308 0 0 chr5 28348185 28348250 -124189009 - PB1D10 SINE Alu -7 110 46 6 801 196 238 0 0 chr5 28348682 28348724 -124188535 - L4 LINE RTE 0 2029 1988 6 801 989 269 10 44 chr5 28348724 28348954 -124188305 + B4A SINE B4 1 230 -62 6 801 1380 105 21 5 chr5 28348954 28349145 -124188114 + B2_Mm2 SINE B2 2 195 0 6 801 989 269 10 44 chr5 28349145 28349210 -124188049 + B4A SINE B4 231 286 -6 6 801 476 330 21 21 chr5 28349365 28349551 -124187708 + MLT1J LTR MaLR 23 208 -304 6 801 389 265 154 29 chr5 28349590 28349765 -124187494 + Tigger7 DNA MER2_type 186 382 -2109 6 801 373 280 47 23 chr5 28349765 28349893 -124187366 + Tigger7 DNA MER2_type 2360 2490 -1 6 801 269 284 78 0 chr5 28349899 28350001 -124187258 + L1MB1 LINE L1 5961 6070 -98 6 801 186 229 0 0 chr5 28350491 28350526 -124186733 - L2b LINE L2 -12 3363 3329 6 801 633 264 104 6 chr5 28351040 28351204 -124186055 + B3A SINE B2 19 198 0 6 801 245 129 15 61 chr5 28351274 28351340 -124185919 + Lx7 LINE L1 7354 7416 -280 6 801 34148 76 36 8 chr5 28351351 28356757 -124180502 + Lx3_Mus LINE L1 439 6034 -975 6 801 519 17 0 0 chr5 28356757 28356817 -124180442 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 6 801 9032 97 58 12 chr5 28356817 28357752 -124179507 + Lx3_Mus LINE L1 6035 7009 0 6 801 536 322 34 28 chr5 28357797 28357973 -124179286 - B3A SINE B2 -21 177 1 6 801 413 36 0 18 chr5 28357986 28358042 -124179217 + (TCC)n Simple_repeat Simple_repeat 3 57 0 6 801 983 249 38 151 chr5 28358636 28359012 -124178247 - MTEa LTR MaLR 0 379 48 6 801 642 247 20 0 chr5 28359012 28359158 -124178101 - B1_Mur3 SINE Alu 0 149 1 6 801 983 249 38 151 chr5 28359158 28359206 -124178053 - MTEa LTR MaLR -332 47 3 6 801 4600 191 15 40 chr5 28359704 28360631 -124176628 - RMER13B LTR ERVK -4 904 1 6 801 559 256 44 19 chr5 28360927 28361086 -124176173 - L1_Mur3 LINE L1 -375 5505 5343 6 801 198 143 0 0 chr5 28361134 28361169 -124176090 + (A)n Simple_repeat Simple_repeat 1 35 0 6 801 1374 296 57 38 chr5 28361217 28361282 -124175977 - L1_Rod LINE L1 -778 5365 5251 6 801 2375 143 11 0 chr5 28361282 28361645 -124175614 - ORR1B2 LTR MaLR 0 367 1 6 801 1374 294 58 39 chr5 28361645 28362375 -124174884 - L1_Rod LINE L1 -839 5304 4558 6 801 316 327 9 37 chr5 28362759 28362867 -124174392 + MLT1C LTR MaLR 1 105 -362 6 801 288 0 0 0 chr5 28362897 28362929 -124174330 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 6 801 1284 0 6 13 chr5 28362931 28363089 -124174170 + (GAGAA)n Simple_repeat Simple_repeat 4 160 0 6 801 201 308 0 0 chr5 28365370 28365422 -124171837 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 801 747 179 13 52 chr5 28365627 28365780 -124171479 - B1_Mur3 SINE Alu -1 148 2 6 801 709 298 62 41 chr5 28366010 28366301 -124170958 + MLT1A LTR MaLR 49 345 -29 6 801 223 324 27 0 chr5 28366680 28366754 -124170505 + ID4 SINE ID 2 77 -6 6 801 211 344 32 32 chr5 28366754 28366773 -124170486 + ID_B1 SINE B4 2 94 -130 6 801 223 146 53 35 chr5 28368166 28368223 -124169036 - PB1D10 SINE Alu -1 116 59 6 801 567 314 0 0 chr5 28368172 28368312 -124168947 - ID_B1 SINE B4 -5 219 80 6 801 523 271 17 0 chr5 28369697 28369815 -124167444 - PB1D7 SINE Alu 0 120 1 6 801 541 294 24 0 chr5 28369828 28369954 -124167305 - ID_B1 SINE B4 -1 223 95 6 801 674 299 86 23 chr5 28370005 28370262 -124166997 - B4A SINE B4 -2 290 18 6 801 387 243 36 27 chr5 28371136 28371246 -124166013 + RSINE1 SINE B4 55 165 0 6 801 245 169 85 0 chr5 28371461 28371520 -124165739 + L1MD3 LINE L1 7039 7102 -893 6 801 2857 80 3 3 chr5 28371816 28372190 -124165069 + RLTR13D5 LTR ERVK 3 376 -647 6 801 722 165 42 28 chr5 28372855 28372998 -124164261 + B1F2 SINE Alu 5 149 0 6 801 497 152 43 0 chr5 28373012 28373104 -124164155 + B3A SINE B2 2 97 -101 6 801 312 319 0 11 chr5 28373092 28373184 -124164075 - ID_B1 SINE B4 -39 185 95 6 801 640 201 48 52 chr5 28373847 28374022 -124163237 - MTEb LTR MaLR -162 217 48 6 801 304 260 64 13 chr5 28374239 28374317 -124162942 + B4 SINE B4 40 121 -171 6 801 208 222 0 36 chr5 28374335 28374391 -124162868 + GA-rich Low_complexity Low_complexity 1 54 0 6 801 551 315 43 6 chr5 28375545 28375708 -124161551 + B4A SINE B4 2 170 -122 6 801 468 48 0 0 chr5 28375739 28375802 -124161457 + (TCTCTG)n Simple_repeat Simple_repeat 2 64 0 6 801 306 194 0 0 chr5 28375804 28375876 -124161383 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 801 3647 68 12 43 chr5 28376224 28376731 -124160528 - L1Md_F2 LINE L1 -1 6581 6091 6 801 280 258 16 0 chr5 28377137 28377199 -124160060 + ID4_ SINE ID 15 77 -6 6 801 245 264 48 117 chr5 28377759 28377862 -124159397 - MLT1A1 LTR MaLR -310 98 3 6 801 1142 263 39 11 chr5 28378556 28378837 -124158422 - B4A SINE B4 0 292 4 6 801 189 0 0 0 chr5 28378956 28378977 -124158282 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 801 328 235 62 0 chr5 28379708 28379789 -124157470 - ID_B1 SINE B4 -18 206 121 6 801 1028 188 9 33 chr5 28379902 28380116 -124157143 + B3 SINE B2 5 213 -3 6 801 785 122 99 7 chr5 28380150 28380291 -124156968 + B2_Mm2 SINE B2 1 154 -41 6 801 275 0 0 28 chr5 28380292 28380328 -124156931 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 6 801 1001 195 9 45 chr5 28380475 28380695 -124156564 - B3 SINE B2 -4 212 1 6 801 193 320 0 49 chr5 28381241 28381323 -124155936 - MER5A DNA MER1_type -8 181 104 6 801 868 258 157 56 chr5 28381504 28381841 -124155418 + MTEa LTR MaLR 2 372 -7 6 801 1261 34 0 0 chr5 28382614 28382761 -124154498 + B1_Mus2 SINE Alu 1 147 0 6 801 196 85 42 21 chr5 28382777 28382825 -124154434 + (CAAA)n Simple_repeat Simple_repeat 3 51 0 6 801 793 220 96 11 chr5 28383015 28383203 -124154056 + B3 SINE B2 13 216 0 6 801 338 156 62 0 chr5 28383550 28383614 -124153645 - B3A SINE B2 -130 68 1 6 801 1128 294 63 60 chr5 28384204 28384360 -124152899 + MTEa LTR MaLR 1 155 -224 6 801 3061 26 3 0 chr5 28384360 28384705 -124152554 + ORR1A0 LTR MaLR 1 346 0 6 801 14422 47 12 1 chr5 28384705 28386478 -124150781 + ORR1A0-int LTR MaLR 1 1792 0 6 801 3061 26 3 0 chr5 28386478 28386823 -124150436 + ORR1A0 LTR MaLR 1 346 0 6 801 1128 294 63 60 chr5 28386823 28387029 -124150230 + MTEa LTR MaLR 156 364 -15 6 801 1066 240 93 4 chr5 28388180 28388241 -124149018 - RCHARR1 DNA MER1_type -4 970 910 6 801 1558 177 119 29 chr5 28388241 28388404 -124148855 + ORR1D1 LTR MaLR 1 156 -218 6 801 237 108 0 0 chr5 28388404 28388441 -124148818 + (TCTG)n Simple_repeat Simple_repeat 1 37 0 6 801 1558 177 119 29 chr5 28388441 28388620 -124148639 + ORR1D1 LTR MaLR 157 374 0 6 801 1843 263 71 80 chr5 28388620 28388923 -124148336 - RCHARR1 DNA MER1_type -65 909 600 6 801 567 290 63 59 chr5 28388923 28389194 -124148065 - B4A SINE B4 -19 273 2 6 801 1843 263 71 80 chr5 28389194 28389576 -124147683 - RCHARR1 DNA MER1_type -375 599 230 6 801 297 0 0 0 chr5 28391333 28391366 -124145893 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 6 801 480 35 0 0 chr5 28391433 28391491 -124145768 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 801 344 310 87 105 chr5 28391662 28391994 -124145265 + MLT1D LTR MaLR 55 380 -125 6 801 248 292 0 14 chr5 28392134 28392207 -124145052 + GA-rich Low_complexity Low_complexity 2 73 0 6 801 248 297 0 15 chr5 28392570 28392635 -124144624 - MLT1C LTR MaLR -344 123 60 6 801 204 0 146 0 chr5 28392790 28392831 -124144428 + (CAGCC)n Simple_repeat Simple_repeat 1 47 0 6 801 313 356 22 0 chr5 28393697 28393832 -124143427 - RMER15 LTR ERVL -16 559 422 6 801 725 212 35 88 chr5 28393862 28394033 -124143226 + RSINE1 SINE B4 4 165 0 6 801 653 281 139 11 chr5 28394566 28394926 -124142333 + L1MB8 LINE L1 5604 6009 -169 6 801 235 228 316 0 chr5 28395098 28395177 -124142082 + RSINE1 SINE B4 2 105 -60 6 801 499 242 93 68 chr5 28395236 28395397 -124141862 + B3A SINE B2 46 210 -6 6 801 864 249 73 29 chr5 28395525 28395798 -124141461 - B4A SINE B4 -6 286 2 6 801 233 220 0 20 chr5 28399285 28399336 -124137923 - ID4 SINE ID -30 53 4 6 801 671 170 26 22 chr5 28401302 28401433 -124135826 + B1_Mus2 SINE Alu 1 127 -21 6 801 394 221 39 0 chr5 28402508 28402585 -124134674 + PB1D9 SINE Alu 12 91 -29 6 801 216 0 0 0 chr5 28404690 28404714 -124132545 + (T)n Simple_repeat Simple_repeat 1 24 0 6 801 800 101 191 25 chr5 28406365 28406527 -124130732 - B2_Mm2 SINE B2 -6 189 1 6 801 469 308 90 69 chr5 28406829 28407048 -124130211 + MLT1C LTR MaLR 3 222 -245 6 801 1604 139 174 25 chr5 28407048 28407365 -124129894 - ORR1B2 LTR MaLR 0 367 4 6 801 469 308 90 69 chr5 28407365 28407522 -124129737 + MLT1C LTR MaLR 223 387 -80 6 801 265 190 0 37 chr5 28407704 28407786 -124129473 + GA-rich Low_complexity Low_complexity 2 80 0 6 801 2061 192 32 25 chr5 28408279 28408700 -124128559 + RLTR11A LTR ERVK 101 485 -43 6 801 519 88 25 0 chr5 28408700 28408780 -124128479 + L1_Mus2 LINE L1 6485 6566 0 6 801 225 0 0 0 chr5 28408785 28408810 -124128449 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 801 2061 184 32 22 chr5 28408810 28408834 -124128425 + RLTR11A LTR ERVK 497 519 -9 6 801 230 254 29 15 chr5 28409807 28409875 -124127384 + (CACCAT)n Simple_repeat Simple_repeat 6 74 0 6 801 487 250 10 86 chr5 28409877 28410074 -124127185 + HAL1-2a_MD LINE L1 2326 2507 -517 6 801 498 276 126 18 chr5 28410807 28410990 -124126269 + B4A SINE B4 118 290 -2 6 801 310 126 47 28 chr5 28410995 28411101 -124126158 + (CA)n Simple_repeat Simple_repeat 1 108 0 6 801 646 96 49 28 chr5 28411113 28411361 -124125898 + (CA)n Simple_repeat Simple_repeat 1 253 0 6 801 241 239 20 61 chr5 28411804 28411902 -124125357 - L1M4 LINE L1 -855 5285 5192 6 801 1268 257 76 39 chr5 28411904 28412260 -124124999 + MTEa LTR MaLR 6 374 -5 6 801 649 311 88 22 chr5 28412285 28412798 -124124461 - L1M4 LINE L1 -971 5169 4621 6 801 208 301 193 9 chr5 28412875 28412989 -124124270 - L2a LINE L2 -1 3425 3291 6 801 390 241 236 41 chr5 28413992 28414187 -124123072 - B4A SINE B4 -59 233 1 7 801 906 308 160 6 chr5 28415420 28415770 -124121489 + MTD LTR MaLR 2 405 -14 7 801 501 17 0 0 chr5 28416850 28416908 -124120351 + (TCCC)n Simple_repeat Simple_repeat 2 59 0 7 801 569 188 7 0 chr5 28416908 28417057 -124120202 + (TG)n Simple_repeat Simple_repeat 1 150 0 7 801 342 0 0 0 chr5 28417361 28417399 -124119860 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 801 551 252 149 14 chr5 28417399 28417540 -124119719 - B4A SINE B4 -132 160 1 7 801 772 251 142 15 chr5 28418038 28418305 -124118954 + MLT1B LTR MaLR 27 327 -63 7 801 814 204 7 0 chr5 28418635 28418782 -124118477 + B1_Mur2 SINE Alu 2 149 0 7 801 614 191 17 25 chr5 28418804 28418922 -124118337 + B3A SINE B2 3 119 -79 7 801 1783 141 20 93 chr5 28418922 28418988 -124118271 - ORR1B1 LTR MaLR 0 394 349 7 801 1045 143 26 21 chr5 28418988 28419181 -124118078 - B2_Mm2 SINE B2 0 195 2 7 801 1783 141 20 93 chr5 28419181 28419459 -124117800 - ORR1B1 LTR MaLR -46 348 75 7 801 29 0 0 0 chr5 28419561 28419590 -124117669 + AT_rich Low_complexity Low_complexity 1 29 0 7 801 835 265 19 9 chr5 28419875 28420088 -124117171 + ID_B1 SINE B4 4 218 -6 7 801 459 241 186 35 chr5 28420132 28420304 -124116955 - B3A SINE B2 0 198 1 7 801 1210 107 10 41 chr5 28420747 28420942 -124116317 + L1_Mus3 LINE L1 6438 6626 -12 7 801 228 370 96 12 chr5 28421493 28421660 -124115599 + MLT1B LTR MaLR 278 458 -9 7 801 299 208 30 36 chr5 28422039 28422204 -124115055 + CT-rich Low_complexity Low_complexity 2 165 0 7 801 259 346 25 0 chr5 28424117 28424198 -124113061 - ID4_ SINE ID 0 83 1 7 801 330 270 40 0 chr5 28424229 28424303 -124112956 - B1F1 SINE Alu -60 89 13 7 801 222 295 0 133 chr5 28424252 28424315 -124112944 - B4 SINE B4 -144 148 91 7 801 252 0 0 0 chr5 28424315 28424343 -124112916 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7 801 1055 73 7 0 chr5 28424343 28424479 -124112780 - B1_Mus1 SINE Alu -11 137 1 7 801 222 295 0 133 chr5 28424479 28424504 -124112755 - B4 SINE B4 -202 90 72 7 801 1113 271 28 11 chr5 28424547 28424834 -124112425 - B4A SINE B4 0 292 1 7 801 264 0 0 158 chr5 28424879 28425195 -124112064 + (CACAG)n Simple_repeat Simple_repeat 1 266 0 7 801 438 198 0 0 chr5 28425163 28425340 -124111919 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 7 801 288 225 0 0 chr5 28425370 28425499 -124111760 + (CAGAGA)n Simple_repeat Simple_repeat 4 132 0 7 801 438 198 0 0 chr5 28425538 28425715 -124111544 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 7 801 208 0 0 160 chr5 28425746 28425927 -124111332 + (CAGAC)n Simple_repeat Simple_repeat 5 156 0 7 801 357 212 0 0 chr5 28425987 28426166 -124111093 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 801 800 198 0 0 chr5 28426189 28426315 -124110944 - B1_Mur1 SINE Alu -11 138 13 7 801 1028 278 19 58 chr5 28426352 28426612 -124110647 + B4A SINE B4 15 264 -28 7 801 357 109 0 0 chr5 28426612 28426667 -124110592 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 801 2826 108 34 47 chr5 28426667 28427135 -124110124 + RMER4A LTR ERVK 5 466 0 7 801 28507 136 49 34 chr5 28427135 28427320 -124109939 + MurERV4-int LTR ERVK 1 207 -5053 7 801 966 42 0 0 chr5 28427320 28427439 -124109820 + (TTC)n Simple_repeat Simple_repeat 1 119 0 7 801 28507 136 49 34 chr5 28427439 28428231 -124109028 + MurERV4-int LTR ERVK 208 1079 -4181 7 801 759 43 0 0 chr5 28428231 28428324 -124108935 + B1_Mus1 SINE Alu 26 118 -30 7 801 792 0 0 0 chr5 28428324 28428412 -124108847 + (GA)n Simple_repeat Simple_repeat 2 89 0 7 801 28507 136 49 34 chr5 28428412 28432518 -124104741 + MurERV4-int LTR ERVK 1080 5255 -5 7 801 2262 129 119 19 chr5 28432526 28432946 -124104313 + RMER4A LTR ERVK 1 462 -4 7 801 414 0 0 0 chr5 28432949 28432995 -124104264 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 801 2441 256 52 90 chr5 28433789 28434831 -124102428 + RMER17B LTR ERVK 5 899 -9 7 801 225 0 0 0 chr5 28435330 28435355 -124101904 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 801 214 315 0 0 chr5 28436139 28436193 -124101066 - PB1 SINE Alu -8 119 66 7 801 593 229 0 0 chr5 28436500 28436605 -124100654 + B3A SINE B2 16 120 -78 7 801 22 56 0 0 chr5 28437371 28437407 -124099852 + AT_rich Low_complexity Low_complexity 1 36 0 7 801 612 86 29 0 chr5 28437864 28437969 -124099290 + (TG)n Simple_repeat Simple_repeat 1 108 0 7 801 354 154 0 0 chr5 28438025 28438103 -124099156 + CT-rich Low_complexity Low_complexity 1 78 0 7 801 366 23 0 0 chr5 28438103 28438146 -124099113 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 801 588 211 0 70 chr5 28438149 28438164 -124099095 - B4A SINE B4 -44 248 234 7 801 1007 130 0 27 chr5 28438164 28438314 -124098945 - B1_Mur4 SINE Alu 0 150 5 7 801 588 242 14 54 chr5 28438314 28438503 -124098756 - B4A SINE B4 -59 233 3 7 801 333 225 24 24 chr5 28438767 28438849 -124098410 - ID4_ SINE ID 0 83 2 7 801 208 324 13 0 chr5 28439328 28439401 -124097858 + MIR SINE MIR 101 183 -85 7 801 342 210 48 61 chr5 28441283 28441430 -124095829 + RMER17A LTR ERVK 327 471 -280 7 801 2669 13 0 0 chr5 28441430 28441742 -124095517 + L1Md_T LINE L1 5275 5586 -297 7 100 9199 4 0 0 chr5 28441742 28442738 -124094521 + L1Md_T LINE L1 5587 6582 0 7 802 243 0 0 0 chr5 28443586 28443613 -124093646 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7 802 1620 0 0 0 chr5 28445480 28445660 -124091599 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 802 402 21 0 0 chr5 28445978 28446025 -124091234 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 802 333 0 0 0 chr5 28446220 28446257 -124091002 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 802 284 253 0 0 chr5 28446372 28446447 -124090812 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 802 590 0 14 0 chr5 28446827 28446897 -124090362 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 802 432 0 0 0 chr5 28448242 28448290 -124088969 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 802 324 0 0 0 chr5 28448708 28448744 -124088515 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 802 315 0 0 0 chr5 28448800 28448835 -124088424 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 802 270 0 0 0 chr5 28452510 28452540 -124084719 + (T)n Simple_repeat Simple_repeat 1 30 0 7 802 937 211 147 21 chr5 28453454 28453739 -124083520 + MTEa LTR MaLR 29 349 -30 7 802 270 200 12 24 chr5 28453740 28453822 -124083437 - Lx8 LINE L1 -1 7472 7392 7 802 586 197 15 0 chr5 28455206 28455343 -124081916 + GA-rich Low_complexity Low_complexity 1 139 0 7 802 782 48 10 0 chr5 28455343 28455446 -124081813 + (GAA)n Simple_repeat Simple_repeat 3 106 0 7 802 279 0 0 0 chr5 28455446 28455476 -124081783 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 7 802 529 167 96 9 chr5 28456370 28456485 -124080774 + B3 SINE B2 87 211 -5 7 802 1149 221 0 9 chr5 28456498 28456713 -124080546 + B3 SINE B2 1 213 -3 7 802 234 0 0 0 chr5 28459489 28459515 -124077744 + (CTG)n Simple_repeat Simple_repeat 1 26 0 7 802 22 0 0 0 chr5 28459657 28459679 -124077580 + AT_rich Low_complexity Low_complexity 1 22 0 7 802 401 325 77 41 chr5 28459736 28459957 -124077302 - MER44D DNA MER2_type -474 231 3 7 802 210 330 74 11 chr5 28460480 28460575 -124076684 - MIRc SINE MIR -125 143 43 7 802 531 209 325 0 chr5 28461918 28462081 -124075178 - B3 SINE B2 0 216 1 7 802 208 206 0 0 chr5 28462183 28462217 -124075042 + polypyrimidine Low_complexity Low_complexity 4 37 0 7 802 933 218 72 5 chr5 28462230 28462424 -124074835 - ID_B1 SINE B4 -14 210 4 7 802 240 374 44 39 chr5 28462471 28462652 -124074607 - B3A SINE B2 -6 192 11 7 802 564 271 35 7 chr5 28462519 28462660 -124074599 - RSINE1 SINE B4 -17 148 4 7 802 618 283 91 0 chr5 28464087 28464306 -124072953 + MER73 LTR ERVL 315 553 -91 7 802 350 231 113 45 chr5 28464461 28464624 -124072635 + MLT2B1 LTR ERVL 359 523 -33 7 802 2339 155 85 0 chr5 28466007 28466395 -124070864 - MTC LTR MaLR 0 421 1 7 802 21 0 0 0 chr5 28466415 28466436 -124070823 + AT_rich Low_complexity Low_complexity 1 21 0 7 802 421 191 412 7 chr5 28466986 28467139 -124070120 - B3 SINE B2 0 216 2 7 802 755 184 257 0 chr5 28467139 28467317 -124069942 - URR1B DNA MER1_type 0 225 1 7 802 849 247 90 73 chr5 28467329 28467683 -124069576 + MTE2a LTR MaLR 1 360 -19 7 802 1420 236 69 31 chr5 28467691 28468080 -124069179 - MTD LTR MaLR -15 404 1 7 802 194 0 39 0 chr5 28468478 28468504 -124068755 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 7 802 398 225 2 44 chr5 28468650 28468753 -124068506 + B1_Mur1 SINE Alu 46 146 -3 7 802 795 183 35 0 chr5 28470791 28470933 -124066326 + B1_Mm SINE Alu 1 147 0 7 802 269 295 28 39 chr5 28471480 28471660 -124065599 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 7 802 314 351 72 41 chr5 28472567 28472952 -124064307 + MLT2B1 LTR ERVL 10 503 -64 7 802 243 218 0 0 chr5 28472958 28473013 -124064246 + (CA)n Simple_repeat Simple_repeat 1 55 0 7 802 227 182 0 0 chr5 28473013 28473057 -124064202 + MLT2B1 LTR ERVL 513 556 -4 7 802 1096 118 16 0 chr5 28473683 28473869 -124063390 - RLTR15 LTR ERVK -170 189 1 7 802 201 290 145 8 chr5 28474882 28475011 -124062248 + MIRb SINE MIR 50 192 -84 7 802 967 271 84 7 chr5 28475859 28476134 -124061125 - MTD LTR MaLR -122 297 2 7 802 463 345 193 35 chr5 28476904 28477298 -124059961 + MT2A LTR ERVL 1 456 -77 7 802 359 250 61 20 chr5 28479535 28479633 -124057626 + MLT1D LTR MaLR 6 107 -398 7 802 275 0 29 0 chr5 28480284 28480319 -124056940 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 802 599 250 28 7 chr5 28480343 28480484 -124056775 - B4A SINE B4 -17 275 132 7 802 507 73 0 0 chr5 28481375 28481443 -124055816 + (GAAA)n Simple_repeat Simple_repeat 3 70 0 7 802 1326 78 0 0 chr5 28481461 28481641 -124055618 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 7 802 256 321 75 9 chr5 28481871 28481978 -124055281 + PB1D7 SINE Alu 5 118 -2 7 802 452 167 0 60 chr5 28481986 28482069 -124055190 + ID4_ SINE ID 3 80 -3 7 802 210 195 0 24 chr5 28482089 28482131 -124055128 + GA-rich Low_complexity Low_complexity 3 43 0 7 802 849 142 272 0 chr5 28482390 28482552 -124054707 + B3 SINE B2 2 207 -9 8 802 1090 82 0 0 chr5 28482597 28482731 -124054528 + B1_Mus1 SINE Alu 2 135 -13 8 802 1309 121 0 5 chr5 28482797 28482988 -124054271 + B2_Mm2 SINE B2 3 192 -3 8 802 815 81 195 0 chr5 28483092 28483215 -124054044 + B1_Mus1 SINE Alu 2 148 0 8 802 396 40 0 0 chr5 28487227 28487277 -124049982 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 802 29 47 0 0 chr5 28487428 28487471 -124049788 + AT_rich Low_complexity Low_complexity 1 43 0 8 802 495 0 0 0 chr5 28489397 28489452 -124047807 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 802 725 113 28 0 chr5 28489452 28489593 -124047666 + (GA)n Simple_repeat Simple_repeat 2 146 0 8 802 513 0 0 0 chr5 28489936 28489993 -124047266 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 802 208 28 83 0 chr5 28489999 28490035 -124047224 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 802 926 76 98 8 chr5 28490035 28490160 -124047099 - B1_Mus1 SINE Alu -10 138 1 8 802 900 108 0 0 chr5 28491212 28491378 -124045881 + (TC)n Simple_repeat Simple_repeat 2 167 0 8 802 261 0 0 0 chr5 28491378 28491406 -124045853 + (TG)n Simple_repeat Simple_repeat 2 30 0 8 802 48 88 0 0 chr5 28492383 28492508 -124044751 + GC_rich Low_complexity Low_complexity 1 125 0 8 802 243 0 0 0 chr5 28493825 28493852 -124043407 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 802 669 25 0 0 chr5 28493956 28494035 -124043224 + (TC)n Simple_repeat Simple_repeat 1 79 0 8 802 414 0 0 0 chr5 28498189 28498235 -124039024 + (TA)n Simple_repeat Simple_repeat 1 46 0 8 802 411 113 0 0 chr5 28502987 28503049 -124034210 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 802 212 321 0 0 chr5 28503110 28503163 -124034096 + MIRb SINE MIR 33 85 -183 2 802 214 95 23 23 chr5 28503557 28503600 -124033659 + (GGA)n Simple_repeat Simple_repeat 1 43 0 3 802 768 214 72 5 chr5 28503778 28503985 -124033274 - ID_B1 SINE B4 -3 221 1 4 802 690 75 0 0 chr5 28504685 28504778 -124032481 + (GA)n Simple_repeat Simple_repeat 1 93 0 5 802 291 54 0 0 chr5 28506612 28506649 -124030610 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 802 306 184 78 13 chr5 28507295 28507372 -124029887 - ID4 SINE ID 0 83 2 7 802 210 188 0 0 chr5 28507854 28507886 -124029373 - B3 SINE B2 -157 59 28 8 802 21 0 0 0 chr5 28507904 28507925 -124029334 + AT_rich Low_complexity Low_complexity 1 21 0 9 802 202 361 109 0 chr5 28507954 28508073 -124029186 + MER91A DNA Tip100 32 163 -33 1 802 776 238 30 6 chr5 28508283 28508452 -124028807 + B3A SINE B2 2 174 -24 1 802 390 42 0 0 chr5 28508453 28508501 -124028758 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 802 243 88 0 0 chr5 28508501 28508534 -124028725 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 802 1097 87 6 0 chr5 28508649 28508821 -124028438 + (TG)n Simple_repeat Simple_repeat 2 174 0 1 802 741 196 22 0 chr5 28508847 28508985 -124028274 - B1F2 SINE Alu -8 141 1 1 802 396 320 0 0 chr5 28508999 28509102 -124028157 - PB1D10 SINE Alu -14 103 1 1 802 211 373 0 0 chr5 28509039 28509114 -124028145 - B4A SINE B4 -144 148 74 1 802 1242 184 262 15 chr5 28509843 28510158 -124027101 - MTD LTR MaLR 0 419 21 1 802 234 0 0 0 chr5 28510158 28510184 -124027075 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 1 802 1242 184 262 15 chr5 28510184 28510204 -124027055 - MTD LTR MaLR -399 20 1 1 802 262 250 0 68 chr5 28510450 28510523 -124026736 + Lx8 LINE L1 7057 7124 -349 2 802 373 190 38 0 chr5 28512892 28512971 -124024288 + MIRb SINE MIR 85 166 -102 2 802 261 0 0 0 chr5 28512974 28513003 -124024256 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 802 565 299 81 66 chr5 28513061 28513272 -124023987 - B4 SINE B4 -77 215 2 2 802 702 118 58 22 chr5 28514475 28514614 -124022645 + L1_Mus3 LINE L1 6495 6638 0 2 802 2812 172 132 10 chr5 28514637 28515431 -124021828 - RMER19B LTR ERVK -11 891 1 2 802 303 104 0 0 chr5 28515842 28515890 -124021369 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 802 198 0 0 0 chr5 28515991 28516013 -124021246 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2 802 1229 35 0 7 chr5 28516013 28516149 -124021110 - B1_Mus2 SINE Alu -11 136 1 2 802 679 216 93 0 chr5 28516229 28516368 -124020891 - B4A SINE B4 -137 155 4 2 802 423 0 0 0 chr5 28519211 28519258 -124018001 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 3 802 2066 181 54 32 chr5 28519584 28520143 -124017116 - RMER4A LTR ERVK 0 585 4 3 802 395 203 68 0 chr5 28520263 28520337 -124016922 + ID_B1 SINE B4 96 174 -50 3 802 333 0 0 0 chr5 28520449 28520486 -124016773 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 802 207 95 23 45 chr5 28520492 28520536 -124016723 + T-rich Low_complexity Low_complexity 6 48 0 3 802 1038 266 123 63 chr5 28520999 28521536 -124015723 + Lx8 LINE L1 6905 7473 0 3 802 246 283 88 83 chr5 28521725 28521906 -124015353 + Charlie4a DNA MER1_type 41 222 -286 3 802 186 43 0 0 chr5 28522543 28522566 -124014693 + (T)n Simple_repeat Simple_repeat 1 23 0 3 802 209 183 17 0 chr5 28523323 28523383 -124013876 + T-rich Low_complexity Low_complexity 5 65 0 3 802 373 247 56 0 chr5 28523383 28523472 -124013787 - PB1D10 SINE Alu 0 117 24 3 802 726 266 12 0 chr5 28523531 28523704 -124013555 - B3 SINE B2 0 216 42 4 802 336 344 0 8 chr5 28526666 28526798 -124010461 + (TCTA)n Simple_repeat Simple_repeat 2 132 0 4 802 242 224 32 13 chr5 28526811 28526965 -124010294 + (TCCA)n Simple_repeat Simple_repeat 1 157 0 4 802 26 64 0 0 chr5 28531252 28531299 -124005960 + AT_rich Low_complexity Low_complexity 1 47 0 4 802 503 101 13 0 chr5 28531704 28531783 -124005476 + (TC)n Simple_repeat Simple_repeat 2 81 0 4 802 297 51 0 0 chr5 28531790 28531829 -124005430 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 802 726 44 0 0 chr5 28534152 28534242 -124003017 + (GGA)n Simple_repeat Simple_repeat 1 90 0 4 802 22 0 0 0 chr5 28534579 28534601 -124002658 + AT_rich Low_complexity Low_complexity 1 22 0 4 802 414 0 0 0 chr5 28537773 28537819 -123999440 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 802 369 0 0 0 chr5 28539860 28539901 -123997358 + (TTA)n Simple_repeat Simple_repeat 2 42 0 4 802 263 299 65 0 chr5 28540329 28540406 -123996853 + B1F SINE Alu 68 149 0 5 802 494 235 109 51 chr5 28540502 28540677 -123996582 - B2_Mm2 SINE B2 -10 185 1 5 802 290 159 0 14 chr5 28541148 28541218 -123996041 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 802 438 103 0 0 chr5 28541871 28541949 -123995310 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 5 802 495 254 146 71 chr5 28542245 28542373 -123994886 + MLT1B LTR MaLR 52 179 -211 5 802 430 193 250 17 chr5 28542373 28542489 -123994770 + B1_Mur1 SINE Alu 1 143 -6 5 802 495 254 146 71 chr5 28542489 28542669 -123994590 + MLT1B LTR MaLR 180 383 -7 5 802 225 233 31 62 chr5 28542738 28542802 -123994457 - MER57C2 LTR ERV1 -356 78 17 5 802 378 0 0 0 chr5 28543427 28543469 -123993790 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 802 303 28 0 0 chr5 28543595 28543631 -123993628 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 802 395 38 19 0 chr5 28543712 28543765 -123993494 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 802 537 293 43 7 chr5 28543891 28544032 -123993227 + RSINE1 SINE B4 4 149 -16 6 802 237 33 0 0 chr5 28544043 28544073 -123993186 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 802 516 282 32 0 chr5 28544679 28544803 -123992456 + B1_Mur1 SINE Alu 14 141 -8 6 802 440 217 65 11 chr5 28545211 28545304 -123991955 + RSINE1 SINE B4 3 100 -65 6 802 351 111 16 0 chr5 28545314 28545377 -123991882 - B2_Mm1a SINE B2 -3 190 127 6 802 1102 88 0 13 chr5 28545431 28545580 -123991679 - B2_Mm2 SINE B2 -47 148 2 6 802 1401 73 17 0 chr5 28545765 28545942 -123991317 + B2_Mm2 SINE B2 2 181 -14 6 802 532 200 44 3 chr5 28546419 28546553 -123990706 - MTC-int LTR MaLR -862 396 304 6 802 1781 226 50 3 chr5 28546653 28547012 -123990247 + MTD LTR MaLR 32 407 -12 6 802 747 182 72 14 chr5 28547525 28547664 -123989595 - B1_Mus1 SINE Alu 0 148 2 6 802 266 185 261 0 chr5 28547754 28547819 -123989440 - ID4 SINE ID 0 83 2 7 802 359 345 0 0 chr5 28548108 28548227 -123989032 + (CA)n Simple_repeat Simple_repeat 2 120 0 7 802 32363 77 26 1 chr5 28549036 28555042 -123982217 - L1_Mus1 LINE L1 0 6567 397 7 802 329 333 104 58 chr5 28555707 28556016 -123981243 + MLT1C LTR MaLR 79 401 -66 7 802 936 222 60 5 chr5 28556884 28557083 -123980176 + B3 SINE B2 2 211 -5 7 802 422 253 0 24 chr5 28557261 28557346 -123979913 + B3 SINE B2 13 95 -121 7 802 833 240 52 42 chr5 28557349 28557562 -123979697 + B3 SINE B2 2 216 0 7 802 21 0 0 0 chr5 28557581 28557602 -123979657 + AT_rich Low_complexity Low_complexity 1 21 0 7 802 879 197 51 41 chr5 28557671 28557867 -123979392 + B3 SINE B2 2 199 -17 7 802 3014 154 58 26 chr5 28557869 28558434 -123978825 - RMER4B LTR ERVK -2 583 1 7 802 1051 16 0 0 chr5 28558596 28558720 -123978539 + B1_Mus2 SINE Alu 17 140 -7 8 802 234 62 0 0 chr5 28558720 28558752 -123978507 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 802 417 219 0 0 chr5 28559381 28559454 -123977805 + B3 SINE B2 45 117 -99 8 802 360 0 0 0 chr5 28559552 28559592 -123977667 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 802 968 131 54 43 chr5 28559979 28560163 -123977096 + B2_Mm2 SINE B2 2 187 -8 8 802 563 234 19 0 chr5 28560416 28560523 -123976736 + RSINE1 SINE B4 17 125 -40 8 802 333 0 0 0 chr5 28560528 28560565 -123976694 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 802 369 265 147 0 chr5 28560827 28560929 -123976330 + B1F SINE Alu 14 130 -19 8 802 361 0 0 39 chr5 28560938 28560989 -123976270 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 8 802 1686 190 126 13 chr5 28561122 28561496 -123975763 - MTD LTR MaLR 0 419 4 8 802 328 277 32 11 chr5 28561645 28561740 -123975519 - Tigger7 DNA MER2_type -2385 106 10 9 802 349 262 42 137 chr5 28561868 28561897 -123975362 + B4A SINE B4 67 218 -74 9 802 905 158 7 0 chr5 28561897 28562036 -123975223 + B1_Mur4 SINE Alu 2 141 -9 9 802 255 227 128 39 chr5 28562497 28562575 -123974684 + RSINE1 SINE B4 4 88 -77 9 802 231 287 51 134 chr5 28563203 28563360 -123973899 - RLTR25A LTR ERVK -439 664 521 9 802 786 187 8 0 chr5 28563263 28563397 -123973862 - B1_Mur1 SINE Alu -7 142 8 9 802 392 275 38 127 chr5 28563397 28563419 -123973840 - B4 SINE B4 -71 219 78 9 802 763 262 58 0 chr5 28563466 28563638 -123973621 - B3A SINE B2 -16 182 1 9 802 592 273 167 5 chr5 28563713 28563934 -123973325 - B4A SINE B4 -35 257 1 9 802 180 0 0 0 chr5 28563998 28564018 -123973241 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9 802 409 342 0 13 chr5 28565197 28565354 -123971905 + (CATA)n Simple_repeat Simple_repeat 1 155 0 1 802 387 326 11 0 chr5 28566772 28566864 -123970395 + RSINE1 SINE B4 48 140 -25 1 802 22 0 0 0 chr5 28566898 28566920 -123970339 + AT_rich Low_complexity Low_complexity 1 22 0 1 802 22 0 0 0 chr5 28566984 28567006 -123970253 + AT_rich Low_complexity Low_complexity 1 22 0 1 802 393 234 0 0 chr5 28567061 28567172 -123970087 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 1 802 915 142 6 11 chr5 28567188 28567366 -123969893 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 1 802 279 0 0 0 chr5 28568615 28568646 -123968613 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1 802 441 0 0 0 chr5 28571403 28571452 -123965807 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 802 283 232 171 0 chr5 28572585 28572667 -123964592 - B3 SINE B2 0 216 121 1 802 389 168 16 0 chr5 28572822 28572902 -123964357 - B3A SINE B2 -113 82 1 1 803 448 195 124 22 chr5 28573864 28573953 -123963306 + 5S rRNA rRNA 1 98 -23 1 803 512 290 115 62 chr5 28577213 28577518 -123959741 - MLT1B LTR MaLR -69 321 1 1 803 325 286 34 45 chr5 28577850 28577938 -123959321 - MLT1L LTR MaLR -473 137 51 1 803 623 199 92 0 chr5 28579370 28579501 -123957758 + B1F SINE Alu 3 145 -4 1 803 845 195 61 31 chr5 28580193 28580389 -123956870 + ORR1D2 LTR MaLR 162 363 -7 1 803 183 100 0 0 chr5 28581237 28581267 -123955992 + (TCTCTG)n Simple_repeat Simple_repeat 1 30 0 1 803 1254 71 65 0 chr5 28581459 28581627 -123955632 + B2_Mm1t SINE B2 1 179 -14 1 803 346 110 327 18 chr5 28581679 28581789 -123955470 + B2_Mm2 SINE B2 47 190 -5 1 803 243 299 20 39 chr5 28582009 28582162 -123955097 + (CA)n Simple_repeat Simple_repeat 1 150 0 1 803 2727 110 36 23 chr5 28582180 28582619 -123954640 + BGLII_A LTR ERVK 1 445 0 1 803 291 54 0 0 chr5 28582635 28582672 -123954587 + (CATA)n Simple_repeat Simple_repeat 3 39 0 1 803 329 93 19 0 chr5 28582712 28582766 -123954493 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 803 414 0 0 0 chr5 28582861 28582907 -123954352 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 803 368 209 0 75 chr5 28583477 28583637 -123953622 + G-rich Low_complexity Low_complexity 3 150 0 1 803 195 206 0 66 chr5 28583649 28583831 -123953428 + G-rich Low_complexity Low_complexity 5 174 0 1 803 237 203 0 63 chr5 28583855 28584044 -123953215 + G-rich Low_complexity Low_complexity 3 179 0 1 803 419 298 0 9 chr5 28584776 28584881 -123952378 + MER58A DNA MER1_type 4 107 -117 1 803 558 347 7 13 chr5 28584915 28585064 -123952195 - RSINE1 SINE B4 -15 150 3 1 803 224 298 5 53 chr5 28585994 28586182 -123951077 + GA-rich Low_complexity Low_complexity 1 179 0 1 803 328 307 0 49 chr5 28586122 28586307 -123950952 + G-rich Low_complexity Low_complexity 1 176 0 1 803 1071 229 18 9 chr5 28586314 28586543 -123950716 + B4A SINE B4 44 274 -18 1 803 212 158 0 0 chr5 28586573 28586611 -123950648 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 1 803 875 190 179 0 chr5 28587379 28587563 -123949696 + URR1B DNA MER1_type 5 221 -4 1 803 354 23 0 0 chr5 28588474 28588517 -123948742 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 803 351 296 23 17 chr5 28589314 28589486 -123947773 + CT-rich Low_complexity Low_complexity 4 176 0 1 803 259 322 43 32 chr5 28589566 28589659 -123947600 + ZP3AR Satellite Satellite 11 104 -108 1 803 765 233 94 0 chr5 28589602 28589680 -123947579 + ID_B1 SINE B4 3 95 -129 1 803 305 297 139 0 chr5 28589680 28589781 -123947478 + PB1D10 SINE Alu 1 115 -2 1 803 339 336 56 28 chr5 28590371 28590515 -123946744 + MLT1J LTR MaLR 361 508 -4 1 803 1154 251 52 67 chr5 28590836 28591238 -123946021 - MTC LTR MaLR -8 413 18 1 803 275 304 10 0 chr5 28591364 28591466 -123945793 + (ATG)n Simple_repeat Simple_repeat 3 105 0 1 803 396 0 0 0 chr5 28591653 28591697 -123945562 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 803 306 0 0 0 chr5 28591697 28591730 -123945529 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 803 372 340 93 0 chr5 28591798 28591948 -123945311 + RSINE1 SINE B4 2 165 0 1 803 689 264 0 25 chr5 28592266 28592333 -123944926 + B3 SINE B2 58 121 -95 1 803 2048 134 70 68 chr5 28592333 28592716 -123944543 + ORR1C2 LTR MaLR 1 384 0 1 803 689 264 0 25 chr5 28592716 28592811 -123944448 + B3 SINE B2 122 216 0 1 803 704 298 43 5 chr5 28593248 28593457 -123943802 + ID_B1 SINE B4 8 224 0 1 803 626 207 84 114 chr5 28593461 28593663 -123943596 + B3A SINE B2 3 198 0 1 803 258 301 94 94 chr5 28594063 28594243 -123943016 + MER77 LTR ERVL 405 584 -23 1 803 226 299 166 55 chr5 28594127 28594290 -123942969 + MER21B LTR ERV1 420 600 -263 1 803 364 81 22 33 chr5 28594644 28594734 -123942525 + (TTTTG)n Simple_repeat Simple_repeat 2 90 0 1 803 1163 48 0 40 chr5 28594745 28594897 -123942362 - B1_Mm SINE Alu 0 147 2 1 803 349 157 415 7 chr5 28594922 28595057 -123942202 - Lx5 LINE L1 0 7050 6861 1 803 203 79 26 0 chr5 28595058 28595096 -123942163 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 1 803 1140 235 80 53 chr5 28596294 28596638 -123940621 + ORR1E LTR MaLR 3 379 0 1 803 291 250 83 0 chr5 28596899 28596983 -123940276 + Ricksha_c DNA MuDR 630 720 -1328 1 803 418 91 0 25 chr5 28597038 28597117 -123940142 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 803 1477 269 52 41 chr5 28597131 28597593 -123939666 - Lx6 LINE L1 0 7460 6994 1 803 2301 131 49 0 chr5 28597783 28597978 -123939281 - ORR1C2 LTR MaLR 0 384 175 1 803 189 74 0 0 chr5 28597978 28598005 -123939254 + (CAGAGA)n Simple_repeat Simple_repeat 2 28 0 1 803 2301 131 49 0 chr5 28598005 28598175 -123939084 - ORR1C2 LTR MaLR -210 174 2 1 803 247 351 19 13 chr5 28598216 28598372 -123938887 + (CATATA)n Simple_repeat Simple_repeat 6 162 0 1 803 247 172 51 17 chr5 28598639 28598698 -123938561 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 1 803 369 0 0 0 chr5 28598724 28598765 -123938494 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 803 497 204 0 11 chr5 28598765 28598854 -123938405 + RSINE1 SINE B4 14 101 -64 1 803 27 0 0 0 chr5 28599196 28599223 -123938036 + AT_rich Low_complexity Low_complexity 1 27 0 1 803 362 235 30 190 chr5 28599297 28599525 -123937734 - RMER4B LTR ERVK -139 763 339 1 803 766 202 132 11 chr5 28599743 28599933 -123937326 - RMER4B LTR ERVK -338 247 35 1 803 1254 27 7 0 chr5 28599957 28600103 -123937156 - B1_Mm SINE Alu 0 147 1 1 803 180 97 0 0 chr5 28600113 28600144 -123937115 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 803 23 0 0 0 chr5 28602352 28602375 -123934884 + AT_rich Low_complexity Low_complexity 1 23 0 1 803 1854 150 18 92 chr5 28604070 28604504 -123932755 - RMER17C LTR ERVK 0 410 9 1 803 530 279 71 62 chr5 28604626 28604836 -123932423 + B3 SINE B2 1 212 -4 1 803 660 308 97 26 chr5 28605009 28605432 -123931827 + MER89 LTR ERV1 48 500 -59 1 803 3550 181 117 69 chr5 28605760 28606646 -123930613 + Lx7 LINE L1 39 967 -6761 1 803 1984 138 79 66 chr5 28606658 28607039 -123930220 - ORR1B1 LTR MaLR -2 392 7 1 803 1295 134 10 0 chr5 28607039 28607241 -123930018 + Lx7 LINE L1 985 1188 -6540 1 803 978 92 1 3 chr5 28607242 28607386 -123929873 + B2_Mm2 SINE B2 1 141 -52 1 803 22027 140 35 50 chr5 28607386 28607951 -123929308 + Lx7 LINE L1 1507 2084 -3796 1 803 189 0 0 0 chr5 28607951 28607972 -123929287 + (CAA)n Simple_repeat Simple_repeat 2 22 0 1 803 22027 140 35 50 chr5 28607972 28608663 -123928596 + Lx7 LINE L1 2085 2774 -3106 1 803 2462 101 8 11 chr5 28608663 28609023 -123928236 + RLTR15 LTR ERVK 1 359 0 1 803 22027 140 35 50 chr5 28609023 28609485 -123927774 + Lx7 LINE L1 2775 3270 -2610 1 803 900 154 0 0 chr5 28609485 28609615 -123927644 + B1_Mur4 SINE Alu 3 132 -18 1 803 22027 140 35 50 chr5 28609615 28609708 -123927551 + Lx7 LINE L1 3271 3331 -2549 1 803 818 162 243 23 chr5 28609708 28609885 -123927374 + B3 SINE B2 1 216 0 1 803 22027 140 35 50 chr5 28609885 28610685 -123926574 + Lx7 LINE L1 3332 4124 -1756 1 803 2243 151 29 8 chr5 28610685 28611059 -123926200 + RLTR14 LTR ERV1 1 382 0 1 803 22027 172 51 80 chr5 28611059 28614036 -123923223 + Lx7 LINE L1 4125 6985 -711 1 803 1302 202 58 13 chr5 28614037 28614348 -123922911 + Lx7 LINE L1 7372 7696 0 1 803 234 91 0 0 chr5 28614360 28614393 -123922866 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1 803 376 247 62 0 chr5 28614710 28614791 -123922468 - RSINE1 SINE B4 -26 139 54 1 803 326 262 60 0 chr5 28615313 28615397 -123921862 + RSINE1 SINE B4 3 91 -74 1 803 198 0 0 0 chr5 28615397 28615419 -123921840 + (T)n Simple_repeat Simple_repeat 1 22 0 1 803 733 162 73 7 chr5 28615419 28615556 -123921703 - B1_Mur3 SINE Alu 0 149 4 1 803 421 289 43 48 chr5 28615784 28615991 -123921268 + MLT1A0 LTR MaLR 142 347 -18 1 803 681 126 150 56 chr5 28616131 28616291 -123920968 + B2_Mm2 SINE B2 3 177 -18 1 803 234 81 0 0 chr5 28616306 28616343 -123920916 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 1 803 1168 131 11 11 chr5 28616542 28616727 -123920532 + B2_Mm2 SINE B2 2 186 -9 1 803 220 296 81 27 chr5 28617084 28617195 -123920064 + PB1D10 SINE Alu 1 117 0 1 803 1497 185 198 6 chr5 28617626 28617974 -123919285 - MTD LTR MaLR 0 419 5 1 803 1077 100 0 32 chr5 28618394 28618580 -123918679 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 803 410 258 81 16 chr5 28618643 28618828 -123918431 - RMER15 LTR ERVL -71 504 308 1 803 988 247 200 37 chr5 28619095 28619554 -123917705 + RMER5 LTR ERV1 1 534 0 1 803 285 98 0 0 chr5 28620132 28620173 -123917086 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1 803 258 345 35 0 chr5 28620186 28620273 -123916986 - RSINE1 SINE B4 -13 152 63 1 803 347 260 67 0 chr5 28620517 28620621 -123916638 + PB1D10 SINE Alu 5 115 -2 1 803 252 136 186 0 chr5 28621526 28621585 -123915674 - PB1D10 SINE Alu -27 90 21 1 803 503 16 16 0 chr5 28621639 28621703 -123915556 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 803 270 56 0 0 chr5 28621703 28621738 -123915521 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 803 369 0 0 0 chr5 28621739 28621780 -123915479 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 803 360 138 92 0 chr5 28622078 28622143 -123915116 + B1_Mur1 SINE Alu 79 149 0 1 803 543 252 38 0 chr5 28622153 28622284 -123914975 + B1F SINE Alu 1 136 -13 1 803 956 190 49 15 chr5 28622297 28622500 -123914759 + B3 SINE B2 1 210 -6 1 803 1648 219 58 23 chr5 28622534 28622931 -123914328 + MTD LTR MaLR 1 411 -8 2 803 683 285 16 0 chr5 28623257 28623443 -123913816 + MLT1A1 LTR MaLR 218 406 -2 2 803 313 201 46 5 chr5 28623534 28623635 -123913624 + L1ME1 LINE L1 4942 5051 -1095 2 803 850 183 0 7 chr5 28623734 28623877 -123913382 + B1_Mus2 SINE Alu 1 142 -5 2 803 210 208 0 0 chr5 28623900 28623948 -123913311 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 803 564 135 18 9 chr5 28624457 28624569 -123912690 + CT-rich Low_complexity Low_complexity 1 113 0 2 803 435 88 0 29 chr5 28624591 28624661 -123912598 - L1Md_F2 LINE L1 -12 6570 6503 2 803 574 257 22 0 chr5 28624672 28624808 -123912451 - B1F SINE Alu -5 144 6 2 803 236 196 0 0 chr5 28624976 28625027 -123912232 + L1ME1 LINE L1 5895 5945 -234 2 803 262 265 68 57 chr5 28625580 28625772 -123911487 + L1MC4 LINE L1 6936 7129 -913 2 803 202 188 0 0 chr5 28626341 28626373 -123910886 + C-rich Low_complexity Low_complexity 2 33 0 2 803 677 237 34 17 chr5 28626847 28627023 -123910236 - B3A SINE B2 -16 182 4 2 803 958 233 143 39 chr5 28627087 28627346 -123909913 - B4 SINE B4 -5 287 2 2 803 426 318 38 19 chr5 28627417 28627574 -123909685 - ID_B1 SINE B4 -58 166 7 2 803 639 187 32 0 chr5 28627706 28627829 -123909430 + B1_Mur2 SINE Alu 17 143 -6 2 803 201 39 0 0 chr5 28627830 28627856 -123909403 + (TTAAA)n Simple_repeat Simple_repeat 2 27 0 2 803 341 93 19 0 chr5 28627856 28627910 -123909349 + (TTTC)n Simple_repeat Simple_repeat 1 55 0 2 803 296 342 9 18 chr5 28627923 28628036 -123909223 - B1F2 SINE Alu -6 143 32 2 803 22 0 0 0 chr5 28628055 28628077 -123909182 + AT_rich Low_complexity Low_complexity 1 22 0 2 803 477 50 0 0 chr5 28628080 28628140 -123909119 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 2 803 431 277 7 51 chr5 28628143 28628280 -123908979 - RSINE1 SINE B4 -33 132 2 2 803 757 281 134 26 chr5 28628502 28628889 -123908370 + MER44B DNA MER2_type 35 463 -87 2 803 717 209 29 0 chr5 28629018 28629157 -123908102 + ID_B1 SINE B4 82 224 0 2 803 284 102 0 20 chr5 28629158 28629208 -123908051 + (CAAAA)n Simple_repeat Simple_repeat 1 49 0 2 803 4293 35 0 2 chr5 28629877 28630371 -123906888 + MT2_Mm LTR ERVL 1 493 0 2 803 1975 138 125 3 chr5 28631224 28631551 -123905708 + ORR1B2 LTR MaLR 1 367 0 2 803 732 274 39 5 chr5 28632730 28632935 -123904324 + B3 SINE B2 5 216 0 2 803 186 43 0 0 chr5 28633366 28633389 -123903870 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 803 323 265 179 0 chr5 28633696 28633813 -123903446 - MTEa LTR MaLR -219 160 23 2 803 1707 21 0 0 chr5 28633991 28634181 -123903078 + B2_Mm1a SINE B2 1 190 -3 2 803 238 278 0 18 chr5 28634221 28634276 -123902983 - ID SINE ID -170 54 1 2 803 432 296 0 25 chr5 28634294 28634412 -123902847 - PB1D10 SINE Alu -2 115 1 2 803 301 298 10 41 chr5 28634328 28634426 -123902833 - B4 SINE B4 -127 165 71 2 803 197 54 0 75 chr5 28634841 28634881 -123902378 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 2 803 486 277 0 0 chr5 28635117 28635218 -123902041 - PB1D10 SINE Alu -16 101 1 2 803 292 304 108 20 chr5 28635356 28635551 -123901708 - L1ME2 LINE L1 -181 5983 5772 2 803 300 224 14 29 chr5 28635678 28635747 -123901512 - ID SINE ID -153 71 4 2 803 239 305 153 8 chr5 28635759 28635994 -123901265 - L1ME2 LINE L1 -848 5596 5328 2 803 771 215 0 0 chr5 28636003 28636152 -123901107 - B1_Mur2 SINE Alu 0 149 1 2 803 573 289 46 0 chr5 28636245 28636397 -123900862 - B3A SINE B2 -36 162 4 2 803 232 310 71 71 chr5 28636447 28636592 -123900667 - L1ME2 LINE L1 -892 5254 5104 2 803 3295 46 5 2 chr5 28636592 28636987 -123900272 - MTA_Mm LTR MaLR 0 396 1 2 803 232 310 71 71 chr5 28636987 28637053 -123900206 - L1ME2 LINE L1 -1043 5103 5037 2 803 1077 156 97 5 chr5 28637053 28637259 -123900000 - URR1B DNA MER1_type 0 225 1 2 803 232 310 71 71 chr5 28637259 28637341 -123899918 - L1ME2 LINE L1 -1110 5036 4960 2 803 1279 138 21 9 chr5 28637341 28637574 -123899685 + RMER4B LTR ERVK 12 247 -338 2 803 306 214 9 18 chr5 28637602 28637698 -123899561 + C-rich Low_complexity Low_complexity 18 113 0 2 803 428 0 19 0 chr5 28637698 28637750 -123899509 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 803 306 214 9 18 chr5 28637750 28637767 -123899492 + C-rich Low_complexity Low_complexity 2 17 0 2 803 498 205 285 42 chr5 28637804 28637996 -123899263 + RMER4B LTR ERVK 345 585 0 2 803 2124 111 12 0 chr5 28638001 28638333 -123898926 - MT2B2 LTR ERVL 0 584 249 2 803 435 236 138 83 chr5 28638339 28638524 -123898735 - L1MD LINE L1 -2180 5815 5616 2 803 389 314 70 14 chr5 28638524 28638592 -123898667 - RSINE1 SINE B4 -12 153 85 2 803 800 48 9 0 chr5 28638592 28638697 -123898562 + (TTCC)n Simple_repeat Simple_repeat 4 109 0 2 803 389 314 70 14 chr5 28638697 28638770 -123898489 - RSINE1 SINE B4 -81 84 4 2 803 435 236 138 83 chr5 28638770 28638838 -123898421 - L1MD LINE L1 -2380 5615 5548 2 803 747 288 50 63 chr5 28638851 28639151 -123898108 - ORR1E LTR MaLR -63 296 1 2 803 368 286 27 0 chr5 28639335 28639447 -123897812 - PB1D7 SINE Alu -1 119 5 2 803 1265 20 0 0 chr5 28639487 28639633 -123897626 + B1_Mm SINE Alu 2 147 0 2 803 629 263 38 66 chr5 28640416 28640557 -123896702 - B3A SINE B2 -20 178 36 2 803 1425 74 21 0 chr5 28640557 28640746 -123896513 - B2_Mm2 SINE B2 -2 193 1 2 803 629 263 38 66 chr5 28640746 28640787 -123896472 - B3A SINE B2 -163 35 1 2 803 292 205 53 64 chr5 28641171 28641265 -123895994 - ORR1D2 LTR MaLR -53 317 225 2 803 210 71 0 0 chr5 28641625 28641653 -123895606 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 803 324 98 0 38 chr5 28641653 28641706 -123895553 - RLTR14 LTR ERV1 -45 337 287 2 803 328 310 183 39 chr5 28641930 28641999 -123895260 + LTR87 LTR ERVL? 268 344 -280 2 803 1218 35 0 0 chr5 28641999 28642141 -123895118 - B1_Mm SINE Alu -5 142 1 2 803 328 310 183 39 chr5 28642141 28642383 -123894876 + LTR87 LTR ERVL? 345 624 0 2 803 185 191 20 41 chr5 28642542 28642591 -123894668 + MIRb SINE MIR 27 74 -194 2 803 22 70 0 0 chr5 28643802 28643845 -123893414 + GC_rich Low_complexity Low_complexity 1 43 0 2 803 207 0 0 0 chr5 28644404 28644427 -123892832 + (T)n Simple_repeat Simple_repeat 1 23 0 2 803 305 278 74 34 chr5 28644854 28645029 -123892230 + Charlie1 DNA MER1_type 56 237 -2544 2 803 2271 154 111 30 chr5 28645353 28645874 -123891385 - RMER6A LTR ERVK -133 623 61 2 803 224 30 0 29 chr5 28645874 28645908 -123891351 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 803 2271 154 111 30 chr5 28645908 28645961 -123891298 - RMER6A LTR ERVK -696 60 4 2 803 418 253 11 0 chr5 28646502 28646593 -123890666 + PB1D10 SINE Alu 13 104 -13 2 803 536 296 84 80 chr5 28647514 28647801 -123889458 - B4A SINE B4 -3 289 2 2 803 1216 113 54 5 chr5 28648810 28648996 -123888263 - B2_Mm2 SINE B2 0 195 1 2 803 1088 65 104 77 chr5 28649043 28649226 -123888033 - B2_Mm2 SINE B2 -6 189 2 2 803 288 53 0 0 chr5 28649249 28649287 -123887972 + (TATG)n Simple_repeat Simple_repeat 2 39 0 2 803 428 116 114 0 chr5 28649309 28649389 -123887870 - B2_Mm2 SINE B2 -68 148 49 2 803 767 224 194 22 chr5 28649488 28649810 -123887449 - MTD LTR MaLR -9 398 1 2 803 822 58 192 0 chr5 28650167 28650287 -123886972 - B1_Mus2 SINE Alu 0 147 5 2 803 227 250 79 0 chr5 28650300 28650376 -123886883 - L1_Mur1 LINE L1 -2037 3849 3768 2 803 27 0 0 0 chr5 28650735 28650762 -123886497 + AT_rich Low_complexity Low_complexity 1 27 0 2 803 21 0 0 0 chr5 28650966 28650987 -123886272 + AT_rich Low_complexity Low_complexity 1 21 0 2 803 312 252 79 97 chr5 28650996 28651110 -123886149 - Lx8 LINE L1 -206 7267 7156 2 803 2207 235 110 14 chr5 28651119 28651692 -123885567 - Lx8 LINE L1 -266 7207 6580 2 803 359 252 32 32 chr5 28651885 28652008 -123885251 - MLT1C LTR MaLR -303 164 42 2 803 242 326 157 20 chr5 28652047 28652194 -123885065 + MER21B LTR ERV1 25 191 -672 2 803 326 230 57 69 chr5 28653987 28654146 -123883113 - MLT1B LTR MaLR -166 224 68 2 803 432 51 0 0 chr5 28654422 28654481 -123882778 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 803 264 269 83 9 chr5 28654501 28654610 -123882649 - L1M4b LINE L1 -4893 2011 1895 2 803 515 279 7 26 chr5 28654737 28654888 -123882371 - B1F1 SINE Alu -1 148 1 2 803 1144 62 0 27 chr5 28654912 28655096 -123882163 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 803 275 301 170 35 chr5 28655098 28655239 -123882020 - RSINE1 SINE B4 -3 162 3 2 803 268 194 13 89 chr5 28655395 28655474 -123881785 - L1M4b LINE L1 -5872 1462 1390 2 803 1848 162 101 20 chr5 28655475 28655524 -123881735 - RMER15 LTR ERVL 0 575 532 2 803 579 96 0 0 chr5 28655524 28655607 -123881652 + (CA)n Simple_repeat Simple_repeat 1 83 0 2 803 1848 162 101 20 chr5 28655607 28655954 -123881305 - RMER15 LTR ERVL -44 531 147 2 803 641 146 7 109 chr5 28656407 28656545 -123880714 - B1_Mus1 SINE Alu -24 124 1 2 803 783 136 56 28 chr5 28656744 28656888 -123880371 - B1_Mus1 SINE Alu 0 148 1 2 803 2967 83 13 2 chr5 28659372 28659768 -123877491 - MTB LTR MaLR 0 400 1 2 803 24 32 0 0 chr5 28661711 28661742 -123875517 + AT_rich Low_complexity Low_complexity 1 31 0 2 803 234 0 0 0 chr5 28662705 28662731 -123874528 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 803 279 93 0 0 chr5 28664294 28664337 -123872922 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 803 746 233 62 6 chr5 28664370 28664547 -123872712 - B3 SINE B2 -29 187 1 2 803 350 286 51 0 chr5 28664677 28664775 -123872484 - PB1D7 SINE Alu -7 113 11 2 803 21 0 0 0 chr5 28664782 28664803 -123872456 + AT_rich Low_complexity Low_complexity 1 21 0 2 803 694 250 25 46 chr5 28664932 28665129 -123872130 + B3 SINE B2 5 197 -1 2 803 207 0 0 0 chr5 28669100 28669123 -123868136 + (T)n Simple_repeat Simple_repeat 1 23 0 2 803 327 65 0 0 chr5 28669282 28669328 -123867931 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 803 342 360 104 2 chr5 28670630 28670815 -123866444 + B4A SINE B4 86 289 -3 2 803 5449 74 9 14 chr5 28671877 28672466 -123864793 + L1VL4 LINE L1 554 1147 -5510 3 803 3050 23 0 0 chr5 28672466 28672812 -123864447 - ORR1A0 LTR MaLR 0 346 1 3 803 8935 65 27 6 chr5 28672812 28674189 -123863070 + L1VL4 LINE L1 1148 2546 -1368 3 803 4032 76 23 0 chr5 28674188 28674865 -123862394 + L1VL4 LINE L1 3032 3723 -2163 3 803 555 183 253 11 chr5 28674959 28675141 -123862118 + URR1A DNA MER1_type 1 226 0 3 803 29 28 0 0 chr5 28675159 28675195 -123862064 + AT_rich Low_complexity Low_complexity 1 36 0 3 803 634 265 84 0 chr5 28675226 28675392 -123861867 - B3A SINE B2 -18 180 1 3 803 252 0 0 0 chr5 28675443 28675471 -123861788 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 803 333 232 72 0 chr5 28675625 28675694 -123861565 - ID4 SINE ID -1 82 9 3 803 293 210 228 14 chr5 28675780 28675925 -123861334 - L1M5 LINE L1 -589 5575 5400 3 803 321 237 69 49 chr5 28676297 28676399 -123860860 - B3 SINE B2 -3 213 110 3 803 624 330 31 20 chr5 28676967 28676992 -123860267 - B3A SINE B2 0 198 176 3 803 243 0 0 0 chr5 28676992 28677019 -123860240 + (GA)n Simple_repeat Simple_repeat 1 27 0 3 803 339 25 0 0 chr5 28677019 28677058 -123860201 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 803 624 330 31 20 chr5 28677058 28677226 -123860033 - B3A SINE B2 -23 175 3 3 803 459 268 32 8 chr5 28677612 28677736 -123859523 + MER5A1 DNA MER1_type 18 144 -22 3 803 197 98 24 0 chr5 28679409 28679450 -123857809 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 3 803 235 230 63 63 chr5 28679677 28679756 -123857503 - RLTR13B4 LTR ERVK -517 286 208 3 803 36 0 0 0 chr5 28680186 28680222 -123857037 + AT_rich Low_complexity Low_complexity 1 36 0 3 803 750 176 0 0 chr5 28680252 28680371 -123856888 - B3 SINE B2 -86 130 12 3 803 1286 200 134 26 chr5 28680397 28680710 -123856549 - ORR1D1 LTR MaLR 0 374 28 3 803 231 88 0 0 chr5 28681364 28681398 -123855861 + (T)n Simple_repeat Simple_repeat 1 34 0 3 803 656 247 99 10 chr5 28682122 28682314 -123854945 - B3 SINE B2 -6 210 2 3 803 298 250 155 14 chr5 28682651 28682793 -123854466 - MER105 DNA DNA -42 162 1 3 803 755 232 0 0 chr5 28684429 28684571 -123852688 - B1_Mur3 SINE Alu -7 142 1 3 803 180 0 0 0 chr5 28688533 28688553 -123848706 + (CCA)n Simple_repeat Simple_repeat 2 21 0 3 803 3916 165 72 89 chr5 28689378 28690268 -123846991 + RMER19B LTR ERVK 1 875 -27 3 803 989 257 80 22 chr5 28690560 28690871 -123846388 + MMAR1 DNA Mariner 1 329 -957 3 803 520 274 86 4 chr5 28690927 28691140 -123846119 + MMAR1 DNA Mariner 456 700 -586 3 803 671 181 30 38 chr5 28692030 28692162 -123845097 + B1_Mur2 SINE Alu 17 147 -2 3 803 405 58 0 0 chr5 28692180 28692232 -123845027 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 3 803 652 264 0 0 chr5 28692232 28692361 -123844898 - B1_Mur1 SINE Alu -18 131 3 3 803 532 286 68 6 chr5 28692388 28692564 -123844695 - B3A SINE B2 -11 187 1 3 803 339 245 215 36 chr5 28693632 28693827 -123843432 - MLT1B LTR MaLR -105 285 56 3 803 789 144 0 0 chr5 28694030 28694148 -123843111 + B1_Mur3 SINE Alu 22 139 -10 3 803 210 158 0 0 chr5 28695677 28695715 -123841544 + T-rich Low_complexity Low_complexity 1 38 0 3 803 431 260 10 10 chr5 28696157 28696252 -123841007 - RSINE1 SINE B4 -38 127 33 3 803 854 176 138 18 chr5 28696252 28696469 -123840790 - ORR1C2 LTR MaLR -2 382 127 3 803 519 188 10 10 chr5 28696641 28696743 -123840516 + PB1D10 SINE Alu 16 117 0 3 803 2538 158 115 15 chr5 28697093 28697614 -123839645 - RMER15 LTR ERVL -2 573 1 3 803 970 63 33 53 chr5 28698451 28698602 -123838657 + B1_Mus1 SINE Alu 1 148 0 3 803 21 57 0 0 chr5 28698643 28698678 -123838581 + AT_rich Low_complexity Low_complexity 1 35 0 3 803 885 191 101 14 chr5 28699285 28699492 -123837767 + URR1B DNA MER1_type 1 225 0 3 803 318 261 71 18 chr5 28699952 28700065 -123837194 - Lx7 LINE L1 -449 7247 7129 3 803 397 275 104 42 chr5 28700909 28701053 -123836206 - RSINE1 SINE B4 -10 155 3 3 803 231 323 10 50 chr5 28701282 28701383 -123835876 - B4 SINE B4 -38 254 158 3 803 395 156 204 20 chr5 28701673 28701771 -123835488 - PB1D9 SINE Alu -4 116 1 3 803 258 105 0 0 chr5 28703948 28703986 -123833273 + (TCC)n Simple_repeat Simple_repeat 2 39 0 3 803 252 0 0 0 chr5 28704331 28704359 -123832900 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 3 100 2453 46 9 33 chr5 28704485 28704822 -123832437 - L1Md_F3 LINE L1 0 6584 6256 3 804 222 179 0 0 chr5 28704885 28704941 -123832318 + (CCAA)n Simple_repeat Simple_repeat 2 57 0 3 804 277 286 95 0 chr5 28705429 28705538 -123831721 - MIR SINE MIR -101 161 50 3 804 345 82 0 0 chr5 28705686 28705747 -123831512 + L1Md_F2 LINE L1 6522 6582 0 3 804 752 253 13 18 chr5 28706020 28706213 -123831046 + B4 SINE B4 1 188 -104 3 804 758 164 50 0 chr5 28706324 28706464 -123830795 - B1_Mur3 SINE Alu 0 149 3 3 804 2818 18 0 0 chr5 28707517 28707853 -123829406 - L1Md_A LINE L1 -503 6079 5744 3 804 4466 12 0 0 chr5 28707863 28708363 -123828896 + L1Md_A LINE L1 6083 6582 0 3 804 952 78 175 7 chr5 28709248 28709402 -123827857 + B2_Mm2 SINE B2 2 181 -14 3 804 1662 21 0 15 chr5 28709788 28709984 -123827275 - B2_Mm1t SINE B2 0 193 1 3 804 922 243 39 5 chr5 28709984 28710187 -123827072 + MTD LTR MaLR 2 211 -208 3 804 312 225 42 0 chr5 28710200 28710271 -123826988 + MTD LTR MaLR 346 419 0 3 804 216 0 0 0 chr5 28710325 28710349 -123826910 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 3 804 324 0 0 0 chr5 28711289 28711325 -123825934 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 3 804 703 265 109 26 chr5 28711350 28711617 -123825642 - B4A SINE B4 -2 290 2 3 804 601 242 32 13 chr5 28711643 28711798 -123825461 - RSINE1 SINE B4 -4 161 4 3 804 736 302 16 16 chr5 28711947 28712132 -123825127 - B3A SINE B2 0 198 14 3 804 212 270 26 39 chr5 28712391 28712468 -123824791 - ID2 SINE ID 0 83 8 3 804 3069 176 82 9 chr5 28713466 28714137 -123823122 - RMER6D LTR ERVK 0 720 1 3 804 886 249 24 0 chr5 28715168 28715373 -123821886 + B3 SINE B2 1 210 -6 3 804 554 323 38 19 chr5 28715393 28715551 -123821708 + RSINE1 SINE B4 5 165 0 3 804 28 48 0 0 chr5 28715646 28715688 -123821571 + AT_rich Low_complexity Low_complexity 1 42 0 3 804 380 255 62 0 chr5 28716075 28716220 -123821039 + (CCCCAG)n Simple_repeat Simple_repeat 4 157 0 3 804 940 59 0 0 chr5 28718604 28718739 -123818520 + L1_Mus2 LINE L1 6385 6519 -47 3 804 335 197 101 58 chr5 28718759 28718861 -123818398 + PB1 SINE Alu 11 127 0 3 804 232 250 39 0 chr5 28718926 28718978 -123818281 + ID4 SINE ID 19 72 -11 3 804 468 0 0 0 chr5 28719022 28719074 -123818185 + (TTTTC)n Simple_repeat Simple_repeat 3 54 0 3 804 210 143 0 0 chr5 28719320 28719355 -123817904 + (CATA)n Simple_repeat Simple_repeat 2 36 0 3 804 504 45 0 0 chr5 28720687 28720754 -123816505 + (CAG)n Simple_repeat Simple_repeat 3 69 0 3 804 276 103 84 0 chr5 28721436 28721543 -123815716 + (TA)n Simple_repeat Simple_repeat 1 116 0 3 804 684 181 55 8 chr5 28721591 28721719 -123815540 + B1_Mur4 SINE Alu 12 145 -5 3 804 21 0 0 0 chr5 28722207 28722228 -123815031 + AT_rich Low_complexity Low_complexity 1 21 0 3 804 1187 126 20 0 chr5 28722228 28722427 -123814832 - L1_Mus3 LINE L1 -7 6631 6429 3 804 312 284 17 60 chr5 28723426 28723542 -123813717 - PB1D10 SINE Alu 0 117 7 3 804 347 141 21 21 chr5 28723542 28723636 -123813623 + (CA)n Simple_repeat Simple_repeat 2 95 0 3 804 334 212 48 48 chr5 28723680 28723764 -123813495 - URR1B DNA MER1_type -141 84 1 3 804 414 116 101 0 chr5 28723795 28723864 -123813395 - Lx9 LINE L1 -167 7477 7402 3 804 299 281 189 8 chr5 28724212 28724334 -123812925 - ID_B1 SINE B4 -1 223 80 3 804 1015 138 39 33 chr5 28724559 28724739 -123812520 + B2_Mm2 SINE B2 1 181 -14 3 804 180 77 0 0 chr5 28725056 28725082 -123812177 + (CAT)n Simple_repeat Simple_repeat 3 28 0 3 804 256 318 62 16 chr5 28726233 28726504 -123810755 - L1MC4 LINE L1 -415 7627 7315 3 804 236 310 26 9 chr5 28726694 28726808 -123810451 - L1MC4 LINE L1 -1031 7011 6896 3 804 269 279 85 85 chr5 28727130 28727271 -123809988 - RMER15 LTR ERVL -13 562 422 3 804 500 233 72 36 chr5 28729375 28729513 -123807746 - RSINE1 SINE B4 -19 146 4 3 804 609 188 25 8 chr5 28731991 28732109 -123805150 + PB1D9 SINE Alu 1 120 0 3 804 286 285 113 23 chr5 28732562 28732864 -123804395 - L1M4 LINE L1 -2624 3522 3194 3 804 245 309 176 66 chr5 28733535 28733837 -123803422 - MLT1A1 LTR MaLR -16 392 58 3 804 1235 98 0 89 chr5 28736564 28736766 -123800493 - B2_Mm2 SINE B2 -10 185 2 3 804 599 233 0 82 chr5 28737869 28738028 -123799231 + B1_Mur1 SINE Alu 1 146 -3 3 804 318 242 74 0 chr5 28738183 28738278 -123798981 + PB1D10 SINE Alu 10 111 -6 3 804 31 0 0 0 chr5 28739290 28739321 -123797938 + AT_rich Low_complexity Low_complexity 1 31 0 3 804 207 0 0 0 chr5 28744893 28744916 -123792343 + (CCCTG)n Simple_repeat Simple_repeat 1 23 0 3 804 226 210 247 0 chr5 28747051 28747132 -123790127 - L1M3 LINE L1 -265 5918 5818 3 804 444 276 58 17 chr5 28747181 28747354 -123789905 - L1M3 LINE L1 -464 5719 5540 3 804 491 331 18 0 chr5 28747749 28747915 -123789344 + B4A SINE B4 3 171 -121 3 804 231 293 16 65 chr5 28748720 28748844 -123788415 - MTEb LTR MaLR -24 355 238 3 804 1031 303 171 28 chr5 28749070 28749718 -123787541 - MTE-int LTR MaLR -97 1483 743 3 804 424 309 172 25 chr5 28750404 28750722 -123786537 - MTEa LTR MaLR -12 367 1 3 804 384 326 68 0 chr5 28750722 28750853 -123786406 - MLT1C LTR MaLR -7 460 321 3 804 281 204 78 22 chr5 28750853 28750943 -123786316 - RMER15 LTR ERVL 0 575 481 4 804 1092 167 270 7 chr5 28750956 28751104 -123786155 + MTD LTR MaLR 18 210 -209 4 804 1126 90 0 0 chr5 28751104 28751248 -123786011 + B1_Mus2 SINE Alu 1 144 -3 4 804 1210 54 6 12 chr5 28751248 28751416 -123785843 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 4 804 1092 167 270 7 chr5 28751416 28751573 -123785686 + MTD LTR MaLR 211 404 -15 4 804 791 145 168 32 chr5 28751581 28751766 -123785493 - RMER15 LTR ERVL -86 489 280 4 804 292 297 59 0 chr5 28751959 28752077 -123785182 - MTE2b LTR MaLR -5 374 250 4 804 1170 160 19 5 chr5 28752394 28752608 -123784651 - URR1B DNA MER1_type -3 222 6 4 804 3148 140 23 28 chr5 28752951 28753185 -123784074 - RLTR12A LTR ERVK -4 564 331 4 804 3185 68 2 2 chr5 28753185 28753583 -123783676 - MTB LTR MaLR -2 398 1 4 804 3148 140 23 28 chr5 28753583 28753915 -123783344 - RLTR12A LTR ERVK -238 330 1 4 804 221 307 11 0 chr5 28754008 28754096 -123783163 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 804 21 0 0 0 chr5 28754149 28754170 -123783089 + AT_rich Low_complexity Low_complexity 1 21 0 4 804 11647 127 50 29 chr5 28754666 28755765 -123781494 - RMER16-int LTR ERVK -1547 3859 2756 4 804 4470 80 17 0 chr5 28755765 28756365 -123780894 + L1_Mus3 LINE L1 6028 6637 -1 4 804 11647 127 50 29 chr5 28756365 28757229 -123780030 - RMER16-int LTR ERVK -2651 2755 1853 4 804 35698 81 16 4 chr5 28757229 28763601 -123773658 - L1Md_F2 LINE L1 -1 6581 135 4 804 5513 219 69 68 chr5 28763605 28765473 -123771786 - ETnERV2-int LTR ERVK -4483 2923 1053 4 804 221 204 19 0 chr5 28765502 28765556 -123771703 + T-rich Low_complexity Low_complexity 1 55 0 4 804 262 244 69 118 chr5 28765642 28765846 -123771413 - ETnERV2-int LTR ERVK -3117 197 4 4 804 501 235 64 127 chr5 28765848 28766131 -123771128 - RLTR9A LTR ERVK 0 368 104 4 804 261 0 0 0 chr5 28766885 28766914 -123770345 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 804 543 66 0 0 chr5 28766914 28766989 -123770270 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 804 838 231 184 4 chr5 28766991 28767230 -123770029 - B4A SINE B4 -6 286 5 4 804 39823 34 0 0 chr5 28767445 28772870 -123764389 - L1Md_T LINE L1 0 6582 1157 4 804 5763 161 30 36 chr5 28772862 28774169 -123763090 - L1Md_T LINE L1 -5411 1205 99 4 804 181 85 41 41 chr5 28774226 28774275 -123762984 + (TCTCTG)n Simple_repeat Simple_repeat 2 50 0 4 804 592 255 20 7 chr5 28774309 28774455 -123762804 - RSINE1 SINE B4 -17 148 1 4 804 2178 101 9 0 chr5 28774529 28774845 -123762414 + ORR1A2 LTR MaLR 1 319 -8 4 804 557 223 0 8 chr5 28774912 28775043 -123762216 + Tigger1 DNA MER2_type 544 673 -1745 4 804 232 287 139 7 chr5 28775097 28775234 -123762025 + Tigger1 DNA MER2_type 923 1077 -1341 4 804 225 237 184 56 chr5 28775271 28775396 -123761863 + Tigger1 DNA MER2_type 1190 1330 -1088 4 804 330 271 0 12 chr5 28775423 28775509 -123761750 - B4A SINE B4 -206 86 2 4 804 483 240 10 0 chr5 28775509 28775603 -123761656 - B4A SINE B4 -197 95 1 4 804 751 290 151 43 chr5 28775605 28776023 -123761236 + Tigger1 DNA MER2_type 1824 2286 -132 4 804 337 318 39 8 chr5 28776047 28776174 -123761085 + B1F1 SINE Alu 17 147 -2 4 804 846 240 55 10 chr5 28776378 28776580 -123760679 + B3 SINE B2 3 213 -3 4 804 407 207 34 74 chr5 28777412 28777635 -123759624 + MTD LTR MaLR 142 419 0 4 804 31 0 0 0 chr5 28777809 28777840 -123759419 + AT_rich Low_complexity Low_complexity 1 31 0 4 804 412 85 17 0 chr5 28778143 28778202 -123759057 - RLTR17 LTR ERVK -317 375 316 4 804 288 231 13 13 chr5 28778391 28778470 -123758789 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 804 3778 155 48 12 chr5 28779650 28780318 -123756941 - RLTR17 LTR ERVK 0 692 1 4 804 1052 280 43 4 chr5 28780344 28780620 -123756639 - B4A SINE B4 -3 289 3 4 804 360 43 0 0 chr5 28780670 28780716 -123756543 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 804 590 336 58 27 chr5 28780730 28780990 -123756269 - Cheshire DNA MER1_type -2143 277 10 4 804 1602 37 21 0 chr5 28781801 28781990 -123755269 + B2_Mm1a SINE B2 1 193 0 4 804 22 35 0 0 chr5 28783543 28783572 -123753687 + AT_rich Low_complexity Low_complexity 1 29 0 4 804 24 32 0 0 chr5 28783735 28783766 -123753493 + AT_rich Low_complexity Low_complexity 1 31 0 4 804 326 74 0 18 chr5 28784251 28784306 -123752953 + (TTA)n Simple_repeat Simple_repeat 1 54 0 4 804 558 67 0 0 chr5 28785199 28785274 -123751985 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 804 231 36 0 0 chr5 28790953 28790981 -123746278 + (CG)n Simple_repeat Simple_repeat 1 28 0 4 804 669 25 0 0 chr5 28793798 28793877 -123743382 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 4 804 242 33 0 0 chr5 28797314 28797344 -123739915 + MER5B DNA MER1_type 25 54 -124 4 804 1417 234 76 10 chr5 28798206 28798599 -123738660 + MTD LTR MaLR 1 419 0 4 804 981 273 106 20 chr5 28800523 28800848 -123736411 - MTE2b LTR MaLR 0 379 53 4 804 295 221 13 54 chr5 28802340 28802425 -123734834 - B1F SINE Alu 0 149 50 4 804 186 133 0 0 chr5 28802425 28802455 -123734804 + (T)n Simple_repeat Simple_repeat 1 30 0 4 804 681 13 0 0 chr5 28804356 28804434 -123732825 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 804 356 325 25 38 chr5 28804794 28804811 -123732448 + ID_B1 SINE B4 70 224 0 4 804 457 288 43 7 chr5 28804811 28804951 -123732308 + B1F1 SINE Alu 5 149 0 4 804 543 16 0 0 chr5 28806078 28806142 -123731117 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 804 1055 127 0 6 chr5 28806184 28806358 -123730901 + (TCTCC)n Simple_repeat Simple_repeat 4 176 0 4 804 381 93 0 0 chr5 28806358 28806412 -123730847 + (TTCCC)n Simple_repeat Simple_repeat 4 57 0 4 804 563 296 86 55 chr5 28806869 28807218 -123730041 + L1MA8 LINE L1 5561 5925 -366 4 804 1564 205 80 23 chr5 28807218 28807568 -123729691 + ORR1D2 LTR MaLR 1 370 0 4 804 563 296 86 55 chr5 28807568 28807636 -123729623 + L1MA8 LINE L1 5926 5991 -300 4 804 1002 269 56 38 chr5 28807827 28808093 -123729166 + B4A SINE B4 19 289 -3 4 804 206 374 60 10 chr5 28809265 28809365 -123727894 - MER5B DNA MER1_type 0 178 74 4 804 1733 219 66 8 chr5 28809537 28809915 -123727344 - MTD LTR MaLR -5 414 15 4 804 648 253 156 21 chr5 28809971 28810157 -123727102 + B3 SINE B2 4 214 -2 4 804 641 268 64 21 chr5 28810170 28810357 -123726902 + B3A SINE B2 2 196 -2 4 804 902 177 14 0 chr5 28810615 28810756 -123726503 - B1_Mur4 SINE Alu -5 145 3 4 804 34386 36 0 0 chr5 28811559 28817277 -123719982 + L1Md_T LINE L1 1 5589 -297 4 804 9050 9 0 3 chr5 28817277 28818314 -123718945 + L1Md_T LINE L1 5590 6585 0 4 804 254 29 0 0 chr5 28818323 28818357 -123718902 + B3A SINE B2 1 34 -164 4 804 204 40 0 0 chr5 28818357 28818382 -123718877 + (A)n Simple_repeat Simple_repeat 1 25 0 4 804 393 149 0 0 chr5 28818443 28818510 -123718749 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 804 1241 221 40 25 chr5 28818515 28818793 -123718466 - B4 SINE B4 -9 283 2 4 804 452 356 101 9 chr5 28818804 28819141 -123718118 - L1MB8 LINE L1 -156 6022 5655 4 804 245 297 109 72 chr5 28819837 28819975 -123717284 + LTR16C LTR ERVL 119 261 -228 4 804 976 163 0 0 chr5 28821432 28821573 -123715686 + B1_Mur2 SINE Alu 1 141 -8 4 804 603 117 0 0 chr5 28821573 28821667 -123715592 + (CAAG)n Simple_repeat Simple_repeat 2 95 0 4 804 218 250 0 0 chr5 28822106 28822158 -123715101 + B3A SINE B2 6 57 -141 4 804 252 343 121 28 chr5 28823076 28823325 -123713934 - ORR1E LTR MaLR 0 359 88 4 804 26 0 0 0 chr5 28823415 28823441 -123713818 + AT_rich Low_complexity Low_complexity 1 26 0 4 804 5692 89 15 13 chr5 28823510 28824359 -123712900 - L1_Mus1 LINE L1 -1 6566 5720 4 804 203 238 16 16 chr5 28824392 28824456 -123712803 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 804 1005 280 105 19 chr5 28824631 28825117 -123712142 - L1_Mur1 LINE L1 -458 5839 5282 4 804 365 0 22 0 chr5 28825117 28825162 -123712097 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 4 804 1005 271 58 19 chr5 28825162 28825179 -123712080 - L1_Mur1 LINE L1 -1019 5281 5265 4 804 1189 187 18 14 chr5 28825898 28826120 -123711139 + URR1B DNA MER1_type 3 225 0 4 804 195 42 0 0 chr5 28827178 28827202 -123710057 + (A)n Simple_repeat Simple_repeat 1 24 0 4 804 936 156 7 0 chr5 28828748 28828902 -123708357 + Lx5 LINE L1 6684 6838 -212 4 804 22 35 0 0 chr5 28829945 28829974 -123707285 + AT_rich Low_complexity Low_complexity 1 29 0 4 804 445 279 45 7 chr5 28829974 28830129 -123707130 - RSINE1 SINE B4 -2 163 3 4 804 803 283 88 15 chr5 28830695 28831181 -123706078 + L1M2a LINE L1 1842 2391 -4777 4 804 2311 133 62 19 chr5 28831259 28831368 -123705891 - ORR1C2 LTR MaLR 0 384 281 4 804 2428 96 16 0 chr5 28831368 28831690 -123705569 - ORR1A2 LTR MaLR 0 327 1 4 804 2311 133 62 19 chr5 28831690 28831948 -123705311 - ORR1C2 LTR MaLR -104 280 1 4 804 576 277 91 73 chr5 28831965 28832353 -123704906 + L1MA9 LINE L1 2238 2585 -4264 4 804 299 336 53 38 chr5 28832574 28832707 -123704552 + RMER15 LTR ERVL 336 470 -105 4 804 1389 241 26 56 chr5 28832735 28833019 -123704240 + MTE2a LTR MaLR 7 280 -99 4 804 2318 96 12 24 chr5 28833019 28833350 -123703909 - ORR1A2 LTR MaLR 0 327 1 4 804 1250 241 26 56 chr5 28833350 28833443 -123703816 + MTE2a LTR MaLR 281 373 -6 4 804 1381 251 39 6 chr5 28833449 28833805 -123703454 - ORR1D2 LTR MaLR -2 368 1 4 100 39785 34 0 0 chr5 28833937 28839351 -123697908 - L1Md_T LINE L1 0 6582 1170 4 805 4712 130 52 46 chr5 28839357 28840251 -123697008 - L1Md_T LINE L1 -5411 1205 307 4 805 258 32 0 0 chr5 28840463 28840494 -123696765 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 805 865 261 183 35 chr5 28840529 28841042 -123696217 + L1MA9 LINE L1 2816 3404 -3441 4 805 2153 266 133 25 chr5 28841074 28842174 -123695085 + L1MA9 LINE L1 4023 5241 -1601 4 805 414 296 76 14 chr5 28842399 28842543 -123694716 - RSINE1 SINE B4 -10 155 3 4 805 787 295 48 44 chr5 28842616 28843070 -123694189 - L1M1 LINE L1 -510 5793 5338 4 805 1009 289 68 15 chr5 28843122 28843570 -123693689 + L1MA9 LINE L1 5199 5686 -1156 4 805 369 230 27 0 chr5 28843636 28843710 -123693549 + ID4_ SINE ID 8 83 0 4 805 324 325 67 12 chr5 28843710 28843875 -123693384 + L1MA9 LINE L1 5679 5852 -990 4 805 468 253 156 26 chr5 28844051 28844472 -123692787 + L1MA9 LINE L1 6242 6740 -253 4 805 311 255 38 48 chr5 28844507 28844618 -123692641 - L1M3 LINE L1 -1716 4424 4311 4 805 605 158 167 0 chr5 28844618 28844738 -123692521 - B1_Mur2 SINE Alu -6 143 4 4 805 311 255 38 48 chr5 28844738 28844836 -123692423 - L1M3 LINE L1 -1830 4310 4218 4 805 257 338 0 12 chr5 28844967 28845048 -123692211 - PB1D10 SINE Alu -25 92 13 4 805 613 239 24 24 chr5 28845056 28845223 -123692036 - L1M3 LINE L1 -1970 4170 4004 4 805 215 368 27 14 chr5 28846841 28846987 -123690272 + (CATG)n Simple_repeat Simple_repeat 1 148 0 4 805 605 120 42 7 chr5 28847068 28847211 -123690048 + (TCTA)n Simple_repeat Simple_repeat 3 150 0 4 805 2901 74 0 0 chr5 28848733 28849098 -123688161 + L1_Mus2 LINE L1 6201 6565 -1 5 805 249 250 105 0 chr5 28850535 28850611 -123686648 + B4A SINE B4 203 286 -6 5 805 375 0 55 0 chr5 28852132 28852187 -123685072 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 805 340 214 182 36 chr5 28852507 28852545 -123684714 - B2_Mm2 SINE B2 -6 189 153 5 805 269 51 26 0 chr5 28852545 28852584 -123684675 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 5 805 340 214 182 36 chr5 28852584 28852710 -123684549 - B2_Mm2 SINE B2 -43 152 1 5 805 855 37 0 0 chr5 28853492 28853599 -123683660 + (TC)n Simple_repeat Simple_repeat 2 108 0 5 805 787 324 12 55 chr5 28853611 28853866 -123683393 - B4 SINE B4 0 292 49 5 805 1411 236 19 6 chr5 28853951 28854267 -123682992 + MTD LTR MaLR 1 320 -99 5 805 1277 223 7 14 chr5 28854275 28854557 -123682702 + MTD LTR MaLR 104 383 -36 5 805 748 210 100 45 chr5 28854569 28854812 -123682447 + MTD LTR MaLR 95 348 -73 5 805 613 234 46 20 chr5 28854848 28855044 -123682215 - MLT1B LTR MaLR -168 222 22 5 805 371 229 22 40 chr5 28855049 28855173 -123682086 + B4 SINE B4 1 122 -170 5 805 438 69 0 0 chr5 28855196 28855254 -123682005 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 805 1052 133 0 6 chr5 28855440 28855621 -123681638 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 805 715 250 132 36 chr5 28856364 28856613 -123680646 - B4A SINE B4 -17 275 3 5 805 522 304 27 0 chr5 28857772 28857920 -123679339 + RSINE1 SINE B4 2 153 -12 5 805 288 0 0 0 chr5 28857934 28857966 -123679293 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 805 492 117 0 0 chr5 28858391 28858468 -123678791 + (GGGA)n Simple_repeat Simple_repeat 1 77 0 5 805 560 156 42 0 chr5 28858973 28859069 -123678190 + B3 SINE B2 3 102 -114 5 805 262 204 19 0 chr5 28859265 28859319 -123677940 + L1MA5 LINE L1 6239 6293 -7 5 805 753 232 52 31 chr5 28859330 28859521 -123677738 + B3A SINE B2 1 195 -3 5 805 23 0 0 0 chr5 28860044 28860067 -123677192 + AT_rich Low_complexity Low_complexity 1 23 0 5 805 4166 164 84 14 chr5 28860070 28860912 -123676347 - Lx3C LINE L1 -48 6928 6028 5 805 612 274 58 84 chr5 28861073 28861439 -123675820 - L1MA5 LINE L1 -226 5954 5603 5 805 273 256 0 49 chr5 28861453 28861535 -123675724 - Lx8 LINE L1 -3 7470 7393 5 805 325 222 0 0 chr5 28861613 28861685 -123675574 - L1MA5 LINE L1 -703 5597 5526 5 805 230 118 19 19 chr5 28861698 28861750 -123675509 - RMER19A LTR ERVK -2 735 684 5 805 6054 42 1 4 chr5 28861752 28862471 -123674788 + L1_Mus1 LINE L1 5850 6566 -1 5 805 3187 169 81 39 chr5 28862503 28863168 -123674091 - RMER19A LTR ERVK -44 693 1 5 805 499 299 32 11 chr5 28863185 28863374 -123673885 - L1MA5 LINE L1 -773 5530 5338 5 805 290 82 82 0 chr5 28863389 28863438 -123673821 - B1F1 SINE Alu -5 144 92 5 805 787 270 129 30 chr5 28863459 28863888 -123673371 + RLTR17 LTR ERVK 60 566 -126 5 805 3968 91 67 1 chr5 28863934 28865035 -123672224 + L1Md_F LINE L1 535 1711 -4172 5 805 11824 72 11 1 chr5 28866317 28867908 -123669351 + L1Md_F LINE L1 1704 3311 -2572 5 805 962 56 16 0 chr5 28867896 28868022 -123669237 - L1_Mus1 LINE L1 -738 5829 5702 5 805 8256 75 1 42 chr5 28868020 28869319 -123667940 - L1Md_F2 LINE L1 0 6582 5297 5 805 6302 67 30 10 chr5 28869319 28870145 -123667114 - L1Md_F2 LINE L1 -1 6581 5739 5 805 8349 114 4 40 chr5 28870145 28871665 -123665594 - L1Md_F2 LINE L1 -586 5297 4080 5 805 7421 73 2 0 chr5 28871662 28872866 -123664393 - L1VL1 LINE L1 -2299 1399 194 5 805 3638 135 36 5 chr5 28872867 28874075 -123663184 - L1Md_F2 LINE L1 -4164 1719 509 5 805 303 248 134 16 chr5 28874320 28874447 -123662812 + B1F SINE Alu 1 142 -7 5 805 3306 36 8 0 chr5 28874471 28874860 -123662399 + MTA_Mm LTR MaLR 1 392 -4 5 805 8659 53 7 20 chr5 28874860 28875971 -123661288 + MTA_Mm-int LTR MaLR 1 1098 0 5 805 3431 35 2 2 chr5 28875971 28876367 -123660892 + MTA_Mm LTR MaLR 1 396 0 5 805 2960 55 3 5 chr5 28876514 28876900 -123660359 - L1_Mus4 LINE L1 0 6636 6252 5 805 2464 39 19 6 chr5 28877041 28877352 -123659907 + L1Md_F2 LINE L1 6265 6579 -3 5 805 180 0 0 0 chr5 28877407 28877427 -123659832 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 805 333 281 160 39 chr5 28877814 28878170 -123659089 + L1M5 LINE L1 5272 5670 -454 5 805 512 257 103 58 chr5 28878355 28878578 -123658681 + MTD LTR MaLR 1 233 -186 5 805 257 109 0 21 chr5 28878582 28878629 -123658630 + (GGGA)n Simple_repeat Simple_repeat 2 47 0 5 805 478 221 16 32 chr5 28878713 28878839 -123658420 + MTD LTR MaLR 282 405 -14 5 805 6916 111 37 11 chr5 28880888 28882668 -123654591 - Lx LINE L1 -2 6652 4821 5 805 847 266 158 108 chr5 28883267 28883745 -123653514 - MT2A LTR ERVL 0 520 11 5 805 490 282 36 12 chr5 28885315 28885480 -123651779 + (CCCA)n Simple_repeat Simple_repeat 3 171 0 5 805 260 296 7 0 chr5 28885487 28885629 -123651630 + (TCTA)n Simple_repeat Simple_repeat 1 143 0 5 805 187 253 21 0 chr5 28885798 28885893 -123651366 + (TCCA)n Simple_repeat Simple_repeat 1 97 0 5 805 248 111 22 0 chr5 28886244 28886289 -123650970 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 805 597 207 34 14 chr5 28886290 28886437 -123650822 - B4 SINE B4 -34 258 109 5 805 380 314 94 44 chr5 28886542 28886711 -123650548 - L1MB7 LINE L1 -40 6144 5966 5 805 2577 167 34 38 chr5 28886711 28887190 -123650069 - RLTR11A2 LTR ERVK 0 527 38 5 805 432 0 0 0 chr5 28887190 28887238 -123650021 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 805 2577 167 34 38 chr5 28887238 28887287 -123649972 - RLTR11A2 LTR ERVK -490 37 1 5 805 380 314 94 44 chr5 28887287 28887437 -123649822 - L1MB7 LINE L1 -219 5965 5809 5 805 355 286 64 54 chr5 28887526 28887721 -123649538 + MTEb LTR MaLR 121 342 -37 5 805 267 29 0 0 chr5 28887802 28887836 -123649423 - U2 snRNA snRNA -154 34 1 5 805 537 242 54 44 chr5 28887849 28888052 -123649207 - L1MB7 LINE L1 -443 5741 5537 5 805 234 325 38 0 chr5 28889253 28889333 -123647926 + MER81 DNA AcHobo 3 85 -29 5 805 388 155 12 23 chr5 28890574 28890660 -123646599 + GA-rich Low_complexity Low_complexity 1 85 0 5 805 29 28 0 0 chr5 28890728 28890764 -123646495 + AT_rich Low_complexity Low_complexity 1 36 0 5 805 795 298 185 22 chr5 28890779 28891499 -123645760 - L1MA6 LINE L1 -55 6245 5409 5 805 556 258 77 52 chr5 28892214 28892447 -123644812 + ORR1E LTR MaLR 104 342 -17 5 805 564 325 82 31 chr5 28893320 28893673 -123643586 - MER82 DNA MER2_type -34 619 249 5 805 373 273 91 0 chr5 28895663 28895773 -123641486 + MTE-int LTR MaLR 827 946 -634 5 805 366 316 29 0 chr5 28896307 28896446 -123640813 - MER2 DNA MER2_type -112 233 91 5 805 247 239 0 56 chr5 28896734 28896805 -123640454 - MTEb LTR MaLR -8 371 305 5 805 1276 165 32 14 chr5 28898719 28898940 -123638319 + URR1B DNA MER1_type 1 225 0 5 805 1775 114 15 71 chr5 28898944 28899284 -123637975 - ORR1A4 LTR MaLR -8 321 1 5 805 230 276 0 109 chr5 28899356 28899466 -123637793 - L2c LINE L2 -238 3149 3052 5 805 8226 134 43 18 chr5 28899917 28902033 -123635226 - Lx5 LINE L1 -358 6692 4503 5 805 3086 184 54 96 chr5 28902044 28902356 -123634903 + Lx6 LINE L1 6601 6887 -573 5 805 513 0 0 0 chr5 28902356 28902413 -123634846 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 805 3086 184 54 96 chr5 28902413 28902817 -123634442 + Lx6 LINE L1 6888 7286 -174 5 805 318 247 0 63 chr5 28902843 28902938 -123634321 + (TATATG)n Simple_repeat Simple_repeat 6 94 0 5 805 369 93 0 0 chr5 28902941 28902995 -123634264 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 805 645 289 69 10 chr5 28903042 28903245 -123634014 - B4 SINE B4 -76 216 2 5 805 414 0 0 0 chr5 28903463 28903509 -123633750 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 805 991 206 5 0 chr5 28904466 28904670 -123632589 + MTD LTR MaLR 1 205 -214 5 805 22307 134 28 134 chr5 28904670 28906740 -123630519 + Lx LINE L1 405 2373 -3510 5 805 788 82 33 0 chr5 28906740 28906862 -123630397 - L1Md_F2 LINE L1 0 6582 6457 5 805 22307 131 11 195 chr5 28906862 28908596 -123628663 + Lx LINE L1 2374 3157 -2726 5 805 4555 70 2 28 chr5 28908596 28909211 -123628048 + L1Md_F2 LINE L1 5983 6581 -1 5 805 22307 137 28 156 chr5 28909211 28912607 -123624652 + Lx LINE L1 3158 6654 0 5 805 863 186 75 9 chr5 28912609 28912821 -123624438 + MTD LTR MaLR 194 419 0 5 805 2469 226 124 43 chr5 28912976 28914087 -123623172 - RMER1B Other Other 0 1066 85 5 805 38771 30 0 0 chr5 28914097 28920712 -123616547 - L1Md_T LINE L1 0 6585 1 5 805 512 284 59 15 chr5 28921898 28922102 -123615157 - MLT1B LTR MaLR -93 297 85 5 805 1737 255 85 18 chr5 28922409 28922904 -123614355 + Lx8 LINE L1 6944 7471 -2 5 805 450 0 0 0 chr5 28924301 28924351 -123612908 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 5 805 288 0 0 0 chr5 28925601 28925633 -123611626 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 805 180 0 0 0 chr5 28925633 28925652 -123611607 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 805 545 281 118 18 chr5 28925973 28926089 -123611170 + B3 SINE B2 29 163 -53 5 805 207 0 0 0 chr5 28926089 28926112 -123611147 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 805 459 0 0 0 chr5 28926112 28926162 -123611097 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 805 545 281 118 18 chr5 28926162 28926214 -123611045 + B3 SINE B2 164 214 -2 5 805 504 280 17 0 chr5 28926230 28926348 -123610911 - PB1D7 SINE Alu 0 120 1 5 805 235 270 225 0 chr5 28927355 28927367 -123609892 - ID_B1 SINE B4 0 224 190 5 805 263 200 55 0 chr5 28927367 28927422 -123609837 - B1F SINE Alu -18 131 74 5 805 243 385 53 15 chr5 28927417 28927474 -123609785 - B4 SINE B4 -146 146 10 5 805 252 297 13 13 chr5 28927474 28927549 -123609710 - ID4_ SINE ID -1 82 8 5 805 42 82 0 0 chr5 28927571 28927669 -123609590 + AT_rich Low_complexity Low_complexity 1 98 0 5 805 1415 302 50 165 chr5 28927753 28928199 -123609060 - Lx8 LINE L1 -56 7417 6967 5 805 817 125 0 0 chr5 28928199 28928319 -123608940 - BGLII_B LTR ERVK -321 120 1 5 805 1415 302 50 165 chr5 28928319 28928698 -123608561 - Lx8 LINE L1 -56 6966 6582 5 805 399 273 8 8 chr5 28928801 28928934 -123608325 - L1MA7 LINE L1 -58 6233 6101 5 805 820 270 23 9 chr5 28929299 28929516 -123607743 - ID_B1 SINE B4 -4 220 1 5 805 1646 236 73 36 chr5 28930050 28930489 -123606770 - Lx6 LINE L1 -30 7430 6976 5 805 265 81 0 0 chr5 28930582 28930619 -123606640 + B3 SINE B2 4 40 -176 5 805 36093 45 1 9 chr5 28930620 28936386 -123600873 + L1Md_T LINE L1 21 5589 -297 5 805 9132 7 0 0 chr5 28936386 28937382 -123599877 + L1Md_T LINE L1 5590 6585 0 5 805 627 137 20 0 chr5 28937390 28937492 -123599767 + B3 SINE B2 27 130 -86 5 805 273 266 133 25 chr5 28937516 28937674 -123599585 + MER53 DNA hAT 19 193 0 6 805 320 314 0 19 chr5 28938962 28939069 -123598190 + (TATATG)n Simple_repeat Simple_repeat 1 105 0 6 805 587 126 42 0 chr5 28939201 28939296 -123597963 + B1_Mus2 SINE Alu 36 134 -13 6 805 616 144 18 9 chr5 28939293 28939405 -123597854 - MTD LTR MaLR -16 403 291 6 805 765 0 0 0 chr5 28939422 28939507 -123597752 + (TTTC)n Simple_repeat Simple_repeat 1 85 0 6 805 907 92 0 0 chr5 28939508 28939638 -123597621 - B1_Mus1 SINE Alu -12 136 7 6 805 649 286 70 5 chr5 28939637 28939823 -123597436 - MTD LTR MaLR -221 198 1 6 805 219 277 0 30 chr5 28940097 28940164 -123597095 + (CAT)n Simple_repeat Simple_repeat 2 66 0 6 805 212 157 0 38 chr5 28940275 28940328 -123596931 + (CAT)n Simple_repeat Simple_repeat 1 51 0 6 805 198 167 0 0 chr5 28940367 28940403 -123596856 + (CAT)n Simple_repeat Simple_repeat 3 38 0 6 805 203 188 21 0 chr5 28940443 28940491 -123596768 - MIR SINE MIR -43 219 171 6 805 413 256 50 28 chr5 28940604 28940745 -123596514 - MTEa LTR MaLR -2 377 234 6 805 12269 64 32 20 chr5 28940852 28942558 -123594701 - Lx7 LINE L1 -1783 5913 4196 6 805 7660 100 16 8 chr5 28942586 28943679 -123593580 + Lx3_Mus LINE L1 5909 7009 0 6 805 35 24 0 0 chr5 28943679 28943721 -123593538 + AT_rich Low_complexity Low_complexity 1 42 0 6 805 1607 304 83 53 chr5 28943787 28944489 -123592770 - MTE-int LTR MaLR -34 1546 824 6 805 2452 304 92 37 chr5 28945570 28946173 -123591086 - RMER15-int LTR ERVL -3027 1972 1335 6 805 1217 167 13 63 chr5 28946173 28946410 -123590849 + URR1B DNA MER1_type 1 225 0 6 805 2452 304 92 37 chr5 28946410 28946793 -123590466 - RMER15-int LTR ERVL -3665 1334 938 6 805 1008 185 69 10 chr5 28946793 28946995 -123590264 + B3 SINE B2 3 216 0 6 805 2452 270 274 27 chr5 28946995 28947286 -123589973 - RMER15-int LTR ERVL -4062 937 568 6 805 309 358 51 0 chr5 28947447 28947584 -123589675 - RMER15-int LTR ERVL -4832 167 24 6 805 482 371 9 9 chr5 28947654 28947866 -123589393 - RMER15 LTR ERVL -48 527 316 6 805 519 17 0 0 chr5 28949087 28949147 -123588112 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 805 183 342 132 8 chr5 28951304 28951425 -123585834 - MIRb SINE MIR -39 229 94 6 805 8040 51 1 2 chr5 28952774 28954084 -123583175 - L1Md_F2 LINE L1 0 6582 5297 6 805 294 143 0 0 chr5 28954721 28954770 -123582489 + (TCCA)n Simple_repeat Simple_repeat 3 51 0 6 805 884 280 9 0 chr5 28955097 28955311 -123581948 - ID_B1 SINE B4 -7 217 2 6 805 369 250 0 11 chr5 28955359 28955448 -123581811 + PB1D10 SINE Alu 20 107 -10 6 805 233 0 62 0 chr5 28955462 28955494 -123581765 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 6 805 23 78 0 0 chr5 28955501 28955552 -123581707 + AT_rich Low_complexity Low_complexity 1 51 0 6 805 291 231 0 71 chr5 28955864 28955934 -123581325 - ID4 SINE ID -16 67 3 6 805 1056 260 37 0 chr5 28956328 28956570 -123580689 - B4 SINE B4 -18 274 24 6 805 27824 127 23 42 chr5 28958562 28962453 -123574806 - L1Md_F3 LINE L1 -292 6292 2334 6 805 1095 83 0 7 chr5 28962453 28962599 -123574660 + B1_Mus2 SINE Alu 2 146 -1 6 805 27824 123 14 45 chr5 28962599 28963735 -123573524 - L1Md_F3 LINE L1 -3550 2333 1339 6 805 4286 164 124 12 chr5 28963784 28964657 -123572602 - L1Md_F3 LINE L1 -4519 1364 395 6 805 208 302 130 15 chr5 28966646 28966777 -123570482 - L2c LINE L2 -178 3209 3064 6 806 247 289 110 30 chr5 28966994 28967094 -123570165 + ORR1E LTR MaLR 35 142 -217 6 806 1104 155 125 0 chr5 28969808 28970008 -123567251 - URR1A DNA MER1_type 0 226 2 6 806 635 269 80 10 chr5 28970158 28970357 -123566902 + B3 SINE B2 2 214 -2 6 806 873 245 69 136 chr5 28971684 28971726 -123565533 + MTE2a LTR MaLR 1 40 -339 6 806 1611 194 73 35 chr5 28971726 28972094 -123565165 + ORR1C2 LTR MaLR 3 384 0 6 806 873 245 69 136 chr5 28972094 28972457 -123564802 + MTE2a LTR MaLR 41 379 0 6 806 293 286 151 41 chr5 28972540 28972686 -123564573 + Charlie12 DNA MER1_type 14 175 -2698 6 806 485 249 110 12 chr5 28972557 28972720 -123564539 - RMER30 DNA MER1_type -22 180 2 6 806 946 218 54 15 chr5 28972851 28973056 -123564203 - B3 SINE B2 -3 213 1 6 806 589 325 45 25 chr5 28973464 28973707 -123563552 + B4A SINE B4 1 248 -44 6 806 339 318 6 31 chr5 28974934 28975096 -123562163 + (TATG)n Simple_repeat Simple_repeat 1 158 0 6 806 329 293 106 84 chr5 28975118 28975297 -123561962 - B4 SINE B4 -10 282 100 6 806 265 47 47 0 chr5 28975309 28975352 -123561907 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 6 806 585 0 0 0 chr5 28975646 28975711 -123561548 + (CACCT)n Simple_repeat Simple_repeat 3 67 0 6 806 23 0 0 0 chr5 28976099 28976122 -123561137 + AT_rich Low_complexity Low_complexity 1 23 0 6 806 465 225 8 62 chr5 28976252 28976380 -123560879 + MTD LTR MaLR 1 121 -298 6 806 651 255 127 5 chr5 28977143 28977348 -123559911 + Tigger7 DNA MER2_type 62 291 -2200 6 806 672 186 0 8 chr5 28977418 28977537 -123559722 - B1_Mus2 SINE Alu -3 144 27 6 806 1372 305 58 52 chr5 28977549 28978122 -123559137 - Lx7 LINE L1 -28 7445 6856 6 806 1758 165 33 125 chr5 28978127 28978253 -123559006 - RMER1C Other Other 0 1342 1225 6 806 1028 103 23 0 chr5 28978253 28978427 -123558832 + (GGA)n Simple_repeat Simple_repeat 3 180 0 6 806 1758 165 33 125 chr5 28978427 28978757 -123558502 - RMER1C Other Other -118 1224 928 6 806 17096 206 92 33 chr5 28978757 28980416 -123556843 - Lx7 LINE L1 -1533 6163 3974 6 806 522 0 0 0 chr5 28980416 28980474 -123556785 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 806 17096 162 21 35 chr5 28980474 28982046 -123555213 - Lx7 LINE L1 -1913 3973 2477 6 806 1673 21 5 0 chr5 28982046 28982237 -123555022 - B2_Mm1a SINE B2 0 193 2 6 806 17096 162 21 35 chr5 28982237 28983509 -123553750 - Lx7 LINE L1 -3410 2476 1205 6 806 3883 151 7 0 chr5 28983486 28984094 -123553165 - L1VL4 LINE L1 -5497 805 194 6 806 1147 212 95 50 chr5 28984086 28984464 -123552795 - L1_Mur3 LINE L1 -875 5005 4611 6 806 244 143 0 93 chr5 28984539 28984593 -123552666 - L1_Mur3 LINE L1 -1278 4599 4551 6 806 336 350 91 28 chr5 28984675 28984928 -123552331 + Tigger7 DNA MER2_type 2219 2487 -4 6 806 7297 45 5 5 chr5 28985948 28986836 -123550423 + L1Md_F2 LINE L1 5695 6582 0 6 806 352 291 191 0 chr5 28986948 28987137 -123550122 - L1MB2 LINE L1 -126 6045 5821 6 806 429 250 0 9 chr5 28987430 28987543 -123549716 + PB1D10 SINE Alu 6 117 0 6 806 10629 142 24 20 chr5 28987574 28989595 -123547664 - Lx2 LINE L1 -985 6012 3982 6 806 1488 142 16 4 chr5 28989595 28989843 -123547416 + Lx2B LINE L1 6013 6263 -734 6 806 3153 167 25 9 chr5 28989851 28990414 -123546845 + Lx2B LINE L1 6429 7000 0 6 806 22 0 0 0 chr5 28990702 28990724 -123546535 + AT_rich Low_complexity Low_complexity 1 22 0 6 806 213 121 0 0 chr5 28991916 28991949 -123545310 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 806 450 0 0 0 chr5 28991952 28992002 -123545257 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 806 603 285 21 48 chr5 28992151 28992339 -123544920 + B3A SINE B2 1 183 -15 6 806 207 0 0 0 chr5 28993404 28993427 -123543832 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 6 806 290 158 24 0 chr5 28994181 28994263 -123542996 + (TCTCTG)n Simple_repeat Simple_repeat 4 87 0 6 806 288 53 0 0 chr5 28994271 28994309 -123542950 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 806 773 264 96 0 chr5 28994797 28994994 -123542265 + ID_B1 SINE B4 2 217 -7 6 806 11088 78 94 2 chr5 28995900 28998558 -123538701 - L1Md_F2 LINE L1 -1 6581 3326 6 806 2066 108 26 0 chr5 28998562 28998869 -123538390 - L1_Mus3 LINE L1 -7 6631 6317 6 806 306 341 0 28 chr5 29000644 29000786 -123536473 + (TATG)n Simple_repeat Simple_repeat 3 140 0 1 806 425 256 0 17 chr5 29000788 29000861 -123536398 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 806 399 89 0 0 chr5 29000861 29000917 -123536342 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 806 425 256 0 17 chr5 29000917 29001022 -123536237 + (TG)n Simple_repeat Simple_repeat 1 105 0 4 806 922 265 50 39 chr5 29001569 29001907 -123535352 + RLTR15 LTR ERVK 1 342 -17 5 806 322 206 79 0 chr5 29003609 29003672 -123533587 - ID4_ SINE ID -14 69 2 6 806 278 309 32 0 chr5 29003684 29003778 -123533481 - ID_B1 SINE B4 -1 223 127 7 806 198 0 0 0 chr5 29003813 29003835 -123533424 + (GAAAA)n Simple_repeat Simple_repeat 1 22 0 8 806 356 258 186 0 chr5 29005489 29005586 -123531673 + PB1D7 SINE Alu 6 120 0 9 806 192 210 129 0 chr5 29005621 29005683 -123531576 - L3 LINE CR1 -3319 1170 1101 1 806 911 256 64 5 chr5 29006231 29006435 -123530824 - ID_B1 SINE B4 -8 216 1 1 806 497 285 64 54 chr5 29006707 29006911 -123530348 - MLT1B LTR MaLR -91 299 94 1 806 607 153 8 24 chr5 29007690 29007817 -123529442 - L1Md_A LINE L1 0 6582 6458 1 806 549 0 0 0 chr5 29008405 29008466 -123528793 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 1 806 2739 59 3 11 chr5 29010729 29011088 -123526171 - MTA_Mm LTR MaLR -40 356 1 1 806 225 125 0 0 chr5 29011090 29011122 -123526137 - L1M2b LINE L1 -6838 371 340 1 806 609 303 123 12 chr5 29012015 29012259 -123525000 + Tigger5 DNA MER2_type 2136 2406 0 1 806 316 303 48 16 chr5 29014536 29014660 -123522599 - RMER15 LTR ERVL -156 419 292 1 806 234 254 189 91 chr5 29014694 29014837 -123522422 - RMER15 LTR ERVL -418 157 1 1 806 308 258 32 0 chr5 29015405 29015467 -123521792 + ID4_ SINE ID 9 72 -11 1 806 254 266 0 59 chr5 29015471 29015539 -123521720 + B4A SINE B4 3 66 -226 2 806 378 254 32 32 chr5 29017737 29017863 -123519396 - Charlie1b DNA MER1_type -202 321 196 2 806 962 292 99 48 chr5 29017907 29018550 -123518709 - L1MB8 LINE L1 -31 7007 6332 2 806 3338 211 44 66 chr5 29018851 29019713 -123517546 - Lx9 LINE L1 -2 7642 6800 2 806 294 296 232 26 chr5 29019715 29020167 -123517092 - L1MB8 LINE L1 -3188 3818 3274 2 806 239 248 121 25 chr5 29020408 29020565 -123516694 - L1MB8 LINE L1 -4020 3314 3143 2 806 237 254 0 0 chr5 29020567 29020638 -123516621 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 806 1064 110 0 0 chr5 29020638 29020784 -123516475 - B1_Mus1 SINE Alu -2 146 1 2 806 320 211 152 26 chr5 29021008 29021159 -123516100 + Lx8 LINE L1 7302 7471 -2 2 806 3593 193 64 80 chr5 29021322 29022277 -123514982 + RMER19B LTR ERVK 16 902 0 2 806 327 324 93 33 chr5 29022429 29022611 -123514648 - L1MB8 LINE L1 -4959 1945 1753 2 806 21 71 0 0 chr5 29022701 29022743 -123514516 + AT_rich Low_complexity Low_complexity 1 42 0 2 806 747 211 14 27 chr5 29022862 29023008 -123514251 + B3A SINE B2 2 145 -53 2 806 252 59 0 0 chr5 29023012 29023046 -123514213 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 806 2318 283 121 28 chr5 29023070 29024239 -123513020 - L1MB8 LINE L1 -5659 1675 399 2 806 1280 246 71 23 chr5 29024532 29024885 -123512374 + ORR1D2 LTR MaLR 1 370 0 3 806 261 353 60 8 chr5 29024887 29025021 -123512238 - Charlie1b DNA MER1_type -327 196 56 2 806 239 287 16 115 chr5 29025792 29025914 -123511345 + L2b LINE L2 3026 3135 -240 3 806 21 36 0 0 chr5 29027037 29027065 -123510194 + AT_rich Low_complexity Low_complexity 1 28 0 3 806 908 253 75 34 chr5 29027499 29027765 -123509494 + B4A SINE B4 2 278 -14 3 806 337 222 9 66 chr5 29029171 29029277 -123507982 + MLT1A1 LTR MaLR 309 408 0 3 806 673 275 17 11 chr5 29029296 29029476 -123507783 + B3A SINE B2 1 181 -17 3 806 940 250 93 53 chr5 29030083 29030438 -123506821 - ORR1D2 LTR MaLR -1 369 1 3 806 186 71 0 0 chr5 29032207 29032235 -123505024 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 806 1110 58 7 0 chr5 29032235 29032372 -123504887 - B1_Mm SINE Alu -9 138 1 3 806 911 219 12 95 chr5 29032831 29033073 -123504186 + B4 SINE B4 2 223 -69 4 806 222 118 0 0 chr5 29033132 29033166 -123504093 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 806 206 116 23 0 chr5 29033166 29033209 -123504050 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 806 244 210 0 0 chr5 29033209 29033271 -123503988 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 806 423 338 131 0 chr5 29035000 29035198 -123502061 + ID_B1 SINE B4 1 224 0 4 806 1026 193 44 0 chr5 29035694 29035875 -123501384 - MER58A DNA MER1_type -10 214 26 4 806 330 245 76 29 chr5 29035878 29035983 -123501276 + MER53 DNA hAT 1 110 -83 4 806 198 118 0 0 chr5 29038038 29038072 -123499187 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 806 4729 281 39 35 chr5 29038109 29039634 -123497625 - Lx7 LINE L1 -333 7363 5832 4 806 396 0 0 0 chr5 29040361 29040405 -123496854 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 806 2982 64 3 0 chr5 29040468 29040844 -123496415 - L1_Mus1 LINE L1 0 6567 6191 5 806 673 243 115 18 chr5 29042727 29042945 -123494314 - Lx8 LINE L1 -352 7121 6883 5 806 1496 27 65 0 chr5 29043482 29043668 -123493591 - L1_Mus1 LINE L1 0 6567 6370 5 806 329 95 16 0 chr5 29043766 29043829 -123493430 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 5 806 760 270 92 0 chr5 29043846 29044031 -123493228 + B4A SINE B4 2 203 -89 5 806 800 285 47 0 chr5 29044031 29044224 -123493035 + MTE2a LTR MaLR 1 202 -177 5 806 186 43 0 0 chr5 29045027 29045050 -123492209 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 806 373 222 90 10 chr5 29045994 29046094 -123491165 + MLT1C LTR MaLR 1 108 -359 5 806 342 67 0 0 chr5 29046146 29046191 -123491068 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 806 207 167 0 0 chr5 29046665 29046701 -123490558 + G-rich Low_complexity Low_complexity 1 36 0 5 806 1451 83 0 30 chr5 29046954 29047153 -123490106 - B2_Mm2 SINE B2 -1 194 2 6 806 4300 77 3 9 chr5 29047800 29048374 -123488885 - L1Md_F2 LINE L1 0 6582 6012 6 806 306 309 182 33 chr5 29050196 29050410 -123486849 + MIRb SINE MIR 15 260 -8 6 806 300 312 0 0 chr5 29051819 29051896 -123485363 + (TGGG)n Simple_repeat Simple_repeat 2 78 0 6 806 296 284 0 31 chr5 29052007 29052105 -123485154 + (TGGA)n Simple_repeat Simple_repeat 3 97 0 6 806 219 114 0 0 chr5 29052259 29052294 -123484965 + (CAAAT)n Simple_repeat Simple_repeat 2 36 0 6 806 4108 215 131 34 chr5 29052420 29053888 -123483371 + RMER1A Other Other 1 1028 -2 6 806 381 331 6 24 chr5 29053899 29054066 -123483193 + (TGGG)n Simple_repeat Simple_repeat 4 167 0 6 806 4220 253 51 12 chr5 29054877 29055915 -123481344 - Lx8 LINE L1 -149 7324 6246 6 806 624 79 0 0 chr5 29055971 29056005 -123481254 + (GAA)n Simple_repeat Simple_repeat 2 35 0 6 806 1350 67 0 0 chr5 29056005 29056183 -123481076 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 7 806 624 79 0 0 chr5 29056183 29056237 -123481022 + (GAA)n Simple_repeat Simple_repeat 3 56 0 7 806 421 315 126 15 chr5 29056278 29056549 -123480710 + L1MB3 LINE L1 5596 5896 -287 7 806 458 135 39 23 chr5 29056588 29056717 -123480542 + CT-rich Low_complexity Low_complexity 1 131 0 7 806 446 303 121 0 chr5 29056718 29056850 -123480409 - ID_B1 SINE B4 -1 223 76 7 806 588 29 0 0 chr5 29056910 29056980 -123480279 + (TG)n Simple_repeat Simple_repeat 2 71 0 7 806 587 162 0 53 chr5 29057310 29057499 -123479760 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 806 195 308 0 0 chr5 29058074 29058217 -123479042 + (TGGG)n Simple_repeat Simple_repeat 2 144 0 7 806 397 235 17 34 chr5 29059225 29059344 -123477915 + Charlie9 DNA MER1_type 5 121 -2636 7 806 245 247 0 0 chr5 29059648 29059721 -123477538 + (TCTG)n Simple_repeat Simple_repeat 4 76 0 7 806 198 150 0 0 chr5 29059721 29059761 -123477498 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 8 806 796 191 14 0 chr5 29059779 29059926 -123477333 - B1_Mur4 SINE Alu 0 150 2 8 806 260 27 27 0 chr5 29059964 29060001 -123477258 + (TTG)n Simple_repeat Simple_repeat 2 39 0 8 806 2816 132 39 4 chr5 29060246 29060739 -123476520 - RLTR28 LTR ERVL -14 510 1 8 806 450 272 8 8 chr5 29060773 29060899 -123476360 - ID_B1 SINE B4 -15 209 84 8 806 303 246 42 43 chr5 29062760 29062866 -123474393 - MLT1A1 LTR MaLR -17 450 304 8 806 318 338 137 55 chr5 29063273 29063639 -123473620 - MLT-int LTR MaLR -739 996 601 8 806 258 313 60 76 chr5 29063670 29063919 -123473340 - ORR1E LTR MaLR -20 339 95 8 806 387 279 0 0 chr5 29064579 29064683 -123472576 - MLT1A1 LTR MaLR -9 399 296 8 806 1097 256 26 15 chr5 29066640 29066906 -123470353 - B4A SINE B4 -22 270 2 8 806 190 353 12 0 chr5 29067418 29067503 -123469756 - MIR3 SINE MIR 0 208 123 9 806 420 20 0 0 chr5 29068055 29068104 -123469155 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 806 423 0 0 0 chr5 29068104 29068150 -123469109 + (GA)n Simple_repeat Simple_repeat 1 47 0 9 806 513 302 144 0 chr5 29068249 29068381 -123468878 - B4 SINE B4 -44 248 87 9 806 198 0 0 0 chr5 29068381 29068403 -123468856 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 9 806 513 302 144 0 chr5 29068403 29068485 -123468774 - B4 SINE B4 -206 86 5 9 806 303 224 0 0 chr5 29069423 29069499 -123467760 + (TG)n Simple_repeat Simple_repeat 1 76 0 9 806 3170 164 124 63 chr5 29069869 29070003 -123467256 + RMER19A LTR ERVK 1 142 -595 9 806 1174 75 0 0 chr5 29070003 29070150 -123467109 + B1_Mus2 SINE Alu 1 147 0 9 806 3170 164 124 63 chr5 29070150 29070710 -123466549 + RMER19A LTR ERVK 143 737 0 9 806 204 320 142 42 chr5 29071346 29071558 -123465701 - L2a LINE L2 -1 3425 3193 9 806 867 276 63 37 chr5 29072510 29072707 -123464552 + B4 SINE B4 2 193 -99 9 806 3976 91 147 41 chr5 29072707 29073021 -123464238 + RMER17A LTR ERVK 1 320 -431 1 806 883 68 34 13 chr5 29073021 29073170 -123464089 + (TCTCC)n Simple_repeat Simple_repeat 5 156 0 1 806 3976 91 147 41 chr5 29073170 29073534 -123463725 + RMER17A LTR ERVK 321 751 0 1 806 867 276 63 37 chr5 29073534 29073607 -123463652 + B4 SINE B4 194 279 -13 9 806 232 167 0 69 chr5 29073937 29073995 -123463264 - ORR1D2 LTR MaLR -4 370 317 1 806 230 122 0 39 chr5 29073999 29074050 -123463209 + B4 SINE B4 181 229 -63 1 806 1241 216 87 14 chr5 29074080 29074367 -123462892 - ORR1D2 LTR MaLR -62 308 1 1 806 860 314 62 14 chr5 29074391 29074666 -123462593 + B4A SINE B4 1 288 -4 1 806 261 0 0 0 chr5 29076002 29076031 -123461228 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1 806 538 311 104 68 chr5 29076107 29076414 -123460845 + MLT1A LTR MaLR 4 321 -53 1 806 406 329 6 42 chr5 29076498 29076663 -123460596 + MER3 DNA MER1_type 47 205 -4 1 806 550 231 21 7 chr5 29077029 29077173 -123460086 + RLTR15 LTR ERVK 1 146 -213 1 806 3809 132 0 8 chr5 29077173 29077790 -123459469 - L1_Mur2 LINE L1 -1728 4149 3538 1 806 12316 101 35 2 chr5 29077781 29080223 -123457036 + L1_Mus3 LINE L1 4082 6620 -16 1 806 390 21 0 0 chr5 29080223 29080270 -123456989 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 806 1133 139 5 69 chr5 29080274 29080491 -123456768 + RLTR15 LTR ERVK 157 359 0 1 806 189 0 0 0 chr5 29081130 29081151 -123456108 + (T)n Simple_repeat Simple_repeat 1 21 0 1 806 856 261 73 7 chr5 29081377 29081666 -123455593 + Lx5 LINE L1 5377 5684 -196 1 806 2117 211 104 13 chr5 29081664 29082191 -123455068 + Lx5 LINE L1 5861 6435 -615 1 806 576 261 29 14 chr5 29083875 29084015 -123453244 + B4A SINE B4 2 143 -149 1 806 279 0 0 0 chr5 29084128 29084159 -123453100 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 806 408 326 82 15 chr5 29084579 29084775 -123452484 + MER20 DNA MER1_type 4 212 -7 1 806 180 0 0 0 chr5 29084989 29085009 -123452250 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 806 911 282 88 27 chr5 29085356 29085466 -123451793 - L1MA8 LINE L1 -205 6086 5964 1 806 3741 154 212 25 chr5 29085466 29086095 -123451164 + RMER19B LTR ERVK 1 755 -147 1 806 399 41 0 0 chr5 29086095 29086144 -123451115 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 1 806 3741 154 212 25 chr5 29086144 29086274 -123450985 + RMER19B LTR ERVK 756 901 -1 1 806 911 282 88 27 chr5 29086274 29086607 -123450652 - L1MA8 LINE L1 -328 5963 5616 1 806 874 157 46 17 chr5 29086759 29086961 -123450298 - URR1B DNA MER1_type 0 225 1 1 806 536 206 91 35 chr5 29086989 29087269 -123449990 - L1MA8 LINE L1 -820 5492 5193 1 806 784 251 121 0 chr5 29088250 29088457 -123448802 + B4A SINE B4 1 232 -60 1 806 393 179 21 21 chr5 29088461 29088558 -123448701 + Lx6 LINE L1 7341 7437 -23 1 806 301 129 21 31 chr5 29088639 29088735 -123448524 + (TTAGGG)n Simple_repeat Simple_repeat 2 96 0 1 806 481 252 8 0 chr5 29088768 29088887 -123448372 + MTC-int LTR MaLR 318 437 -821 1 806 238 335 33 7 chr5 29088944 29089097 -123448162 + (CACCAT)n Simple_repeat Simple_repeat 6 162 0 1 806 396 317 0 28 chr5 29089145 29089288 -123447971 + (CACCAT)n Simple_repeat Simple_repeat 5 143 0 1 806 233 179 22 56 chr5 29089653 29089742 -123447517 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 1 806 4899 47 0 0 chr5 29090150 29090723 -123446536 + L1_Mus1 LINE L1 5872 6444 -123 1 806 1144 64 0 0 chr5 29090747 29090887 -123446372 + B1_Mm SINE Alu 1 140 -7 1 806 563 84 11 0 chr5 29090888 29090983 -123446276 + (CTAA)n Simple_repeat Simple_repeat 1 96 0 1 806 371 183 0 12 chr5 29091456 29091539 -123445720 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 806 510 212 174 60 chr5 29093181 29093382 -123443877 - ID_B1 SINE B4 0 224 1 1 806 341 324 88 72 chr5 29095650 29095913 -123441346 + B4A SINE B4 10 276 -16 1 806 342 0 0 0 chr5 29095929 29095967 -123441292 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 806 441 0 0 0 chr5 29095967 29096015 -123441244 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 806 375 255 0 28 chr5 29096016 29096125 -123441134 + Lx4B LINE L1 6947 7052 -6 1 806 276 208 80 16 chr5 29096132 29096244 -123441015 - MTC LTR MaLR -293 126 6 1 806 23 54 0 0 chr5 29096572 29096609 -123440650 + AT_rich Low_complexity Low_complexity 1 37 0 1 806 279 303 14 138 chr5 29096707 29096845 -123440414 - MTEa LTR MaLR -258 121 1 1 806 211 347 0 0 chr5 29097786 29097861 -123439398 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 807 526 245 99 19 chr5 29099136 29099205 -123438054 + ID SINE ID 2 83 -141 1 807 302 339 36 0 chr5 29099205 29099317 -123437942 + PB1D10 SINE Alu 1 116 -1 1 807 208 98 47 47 chr5 29100120 29100184 -123437075 + CT-rich Low_complexity Low_complexity 1 64 0 1 807 585 208 175 30 chr5 29100739 29100932 -123436327 - ORR1D1 LTR MaLR 0 374 174 1 807 372 156 0 0 chr5 29100932 29101022 -123436237 + GA-rich Low_complexity Low_complexity 1 90 0 1 807 769 214 45 34 chr5 29101022 29101201 -123436058 - ORR1D1 LTR MaLR -193 181 1 1 807 219 139 0 0 chr5 29104177 29104213 -123433046 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 1 807 868 280 67 41 chr5 29104387 29104778 -123432481 - MTD LTR MaLR -14 405 5 1 807 287 312 43 73 chr5 29105298 29105530 -123431729 + RMER15 LTR ERVL 1 225 -350 1 807 798 238 35 0 chr5 29105547 29105749 -123431510 + RMER15 LTR ERVL 326 534 -41 1 807 214 96 37 37 chr5 29106333 29106387 -123430872 + (CTATA)n Simple_repeat Simple_repeat 4 57 0 1 807 567 0 0 0 chr5 29106923 29106986 -123430273 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 807 417 276 0 62 chr5 29107250 29107362 -123429897 - MTEa LTR MaLR -245 134 30 1 807 1839 130 20 0 chr5 29107359 29107652 -123429607 + ORR1B2 LTR MaLR 69 367 0 1 807 362 319 75 26 chr5 29108348 29108695 -123428564 - L1MD LINE L1 -1737 4409 4046 1 807 5220 68 1 3 chr5 29108728 29109390 -123427869 - L1_Mus2 LINE L1 -1 6565 5905 1 807 560 235 72 43 chr5 29111320 29111529 -123425730 + RMER15 LTR ERVL 345 559 -16 1 807 417 257 61 33 chr5 29113272 29113453 -123423806 - L1MA4 LINE L1 -373 5927 5742 1 807 5880 75 0 0 chr5 29113535 29114287 -123422972 + L1_Mus1 LINE L1 5814 6565 -2 1 807 722 11 11 0 chr5 29114351 29114438 -123422821 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 807 436 278 175 55 chr5 29114438 29114655 -123422604 + B4A SINE B4 34 276 -16 1 807 525 16 0 0 chr5 29114686 29114748 -123422511 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 807 460 290 0 0 chr5 29116311 29116404 -123420855 + B4A SINE B4 81 173 -119 1 807 1537 251 55 3 chr5 29116405 29116748 -123420511 - ORR1D2 LTR MaLR -3 367 7 1 807 1257 61 0 0 chr5 29116772 29116952 -123420307 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 807 1314 56 0 0 chr5 29116980 29117160 -123420099 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 807 490 269 142 84 chr5 29117347 29117692 -123419567 + Lx8 LINE L1 7107 7471 -2 1 807 441 0 0 0 chr5 29119284 29119333 -123417926 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 807 253 180 22 0 chr5 29119915 29120004 -123417255 + (TG)n Simple_repeat Simple_repeat 2 92 0 1 807 315 0 0 0 chr5 29120008 29120043 -123417216 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 807 252 0 0 0 chr5 29120043 29120070 -123417189 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 807 2499 156 126 12 chr5 29120465 29120976 -123416283 - RMER4B LTR ERVK 0 585 15 1 807 276 30 0 0 chr5 29121064 29121097 -123416162 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 807 288 0 0 0 chr5 29121737 29121769 -123415490 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 807 1764 223 58 5 chr5 29123343 29123721 -123413538 + MTD LTR MaLR 3 400 -19 1 807 675 37 0 0 chr5 29123724 29123806 -123413453 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 807 210 71 0 0 chr5 29125102 29125130 -123412129 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 807 342 257 230 0 chr5 29125890 29126003 -123411256 + B1_Mur2 SINE Alu 1 139 -10 1 807 301 313 66 7 chr5 29127326 29127477 -123409782 - MER92B LTR ERV1 -371 265 106 1 807 227 204 0 0 chr5 29127863 29127912 -123409347 + L1MA9 LINE L1 6226 6274 -38 1 807 8401 47 1 0 chr5 29130416 29131528 -123405731 + L1_Mus1 LINE L1 5453 6565 -2 1 807 1170 252 79 37 chr5 29132259 29132613 -123404646 - ORR1D2 LTR MaLR -1 369 1 1 807 500 263 174 27 chr5 29133252 29133317 -123403942 + MLT1B LTR MaLR 59 126 -264 1 807 441 0 0 0 chr5 29133317 29133366 -123403893 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 807 500 263 174 27 chr5 29133366 29133519 -123403740 + MLT1B LTR MaLR 127 308 -82 1 807 320 26 0 0 chr5 29134253 29134291 -123402968 + HAL1-3A_ME LINE L1 1974 2011 -847 1 807 615 168 0 0 chr5 29134297 29134416 -123402843 + (CA)n Simple_repeat Simple_repeat 2 120 0 1 807 783 164 0 0 chr5 29135288 29135459 -123401800 + (TG)n Simple_repeat Simple_repeat 1 171 0 1 807 192 97 0 0 chr5 29135467 29135498 -123401761 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 1 807 704 232 53 58 chr5 29135657 29135863 -123401396 + Lx7 LINE L1 7038 7242 -454 1 807 2668 37 75 0 chr5 29136199 29136521 -123400738 - ORR1A1 LTR MaLR 0 346 1 1 807 1931 75 4 8 chr5 29136521 29136788 -123400471 - ORR1A1-int LTR MaLR 0 1792 1527 1 807 4797 75 13 1 chr5 29136786 29137458 -123399801 - ORR1A1-int LTR MaLR -1111 681 2 1 807 2278 77 0 122 chr5 29137459 29137828 -123399431 - ORR1A1 LTR MaLR 0 327 4 1 807 464 48 16 0 chr5 29138364 29138427 -123398832 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 807 865 332 25 18 chr5 29138456 29138732 -123398527 - B4A SINE B4 -3 289 12 1 807 308 299 0 0 chr5 29142514 29142581 -123394678 + ID4 SINE ID 3 69 -14 1 807 203 175 0 17 chr5 29142729 29142787 -123394472 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 807 844 128 27 33 chr5 29143041 29143375 -123393884 + CT-rich Low_complexity Low_complexity 1 331 0 1 807 244 294 164 9 chr5 29143379 29143489 -123393770 - MLT1A0 LTR MaLR -70 295 169 1 807 692 252 38 92 chr5 29143545 29143807 -123393452 - RMER15 LTR ERVL -16 559 312 1 807 955 327 18 11 chr5 29144348 29144629 -123392630 + B4A SINE B4 9 291 -1 1 807 313 259 12 6 chr5 29144631 29144794 -123392465 + (CATA)n Simple_repeat Simple_repeat 4 167 0 1 807 193 219 27 0 chr5 29144864 29144937 -123392322 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 807 522 307 46 23 chr5 29144945 29145075 -123392184 + ID_B1 SINE B4 84 216 -8 1 807 1274 201 43 17 chr5 29145180 29145538 -123391721 + MTD LTR MaLR 3 405 -14 1 807 379 328 85 45 chr5 29145640 29145841 -123391418 + MIRb SINE MIR 52 260 -8 2 807 226 252 74 116 chr5 29146600 29146721 -123390538 + LTR82B Low_complexity ERVL 102 217 -613 2 807 462 49 0 0 chr5 29148538 29148599 -123388660 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 807 363 121 0 0 chr5 29148810 29148868 -123388391 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 807 337 264 102 69 chr5 29148870 29149029 -123388230 - B4 SINE B4 -18 274 78 2 807 209 111 0 43 chr5 29151880 29151927 -123385332 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 2 807 255 141 0 66 chr5 29151941 29152017 -123385242 + (CA)n Simple_repeat Simple_repeat 1 71 0 2 807 237 263 40 0 chr5 29152602 29152678 -123384581 - MIR SINE MIR -81 181 103 2 807 258 0 71 0 chr5 29153975 29154017 -123383242 + (TTG)n Simple_repeat Simple_repeat 2 46 0 2 807 380 141 0 25 chr5 29157395 29157475 -123379784 + (CAT)n Simple_repeat Simple_repeat 1 78 0 2 807 836 143 12 12 chr5 29157989 29158159 -123379100 + CT-rich Low_complexity Low_complexity 5 174 0 2 807 228 256 148 23 chr5 29160287 29160375 -123376884 + Lx8 LINE L1 5804 5902 -1571 2 807 306 0 0 0 chr5 29160852 29160886 -123376373 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 807 923 268 25 30 chr5 29163736 29164010 -123373249 - ID_B1 SINE B4 -20 272 1 2 807 191 103 0 33 chr5 29164430 29164460 -123372799 + MIRm SINE MIR 223 251 -25 2 807 216 193 32 95 chr5 29165353 29165416 -123371843 - B4 SINE B4 -232 60 2 2 807 240 59 0 0 chr5 29165767 29165801 -123371458 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2 807 432 318 0 0 chr5 29166552 29166662 -123370597 + MTE2a-int LTR MaLR 291 400 -1180 2 807 1332 289 226 41 chr5 29166670 29167545 -123369714 + MTE2a-int LTR MaLR 542 1578 -2 2 807 1095 272 42 44 chr5 29167547 29167900 -123369359 + MTE2a LTR MaLR 1 366 -53 2 807 833 280 14 12 chr5 29168356 29168556 -123368703 + B4 SINE B4 74 277 -15 2 807 585 255 119 14 chr5 29169656 29169875 -123367384 + MER46C DNA MER2_type 23 264 -74 2 807 359 336 96 15 chr5 29170243 29170379 -123366880 + B4A SINE B4 28 174 -118 2 807 434 49 0 16 chr5 29170823 29170885 -123366374 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 807 340 302 108 66 chr5 29170990 29171231 -123366028 + B4 SINE B4 1 251 -41 2 807 185 284 103 21 chr5 29172389 29172486 -123364773 - L3 LINE CR1 -804 3685 3581 2 807 414 0 0 0 chr5 29173690 29173736 -123363523 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 807 701 279 198 34 chr5 29174652 29174975 -123362284 + MLT1B LTR MaLR 1 376 -14 2 807 375 41 0 0 chr5 29176816 29176865 -123360394 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 807 1152 153 61 14 chr5 29177042 29177254 -123360005 + URR1A DNA MER1_type 5 226 0 2 807 279 365 96 48 chr5 29178023 29178273 -123358986 + MLT1F2 LTR MaLR 55 316 -244 2 807 378 0 0 0 chr5 29179132 29179174 -123358085 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 807 1247 278 31 42 chr5 29179240 29179529 -123357730 + B4 SINE B4 7 292 0 2 807 1024 301 58 33 chr5 29179548 29179825 -123357434 - MTD LTR MaLR -2 417 131 2 807 1401 126 9 43 chr5 29179825 29180058 -123357201 - URR1A DNA MER1_type -1 225 1 2 807 1024 301 58 33 chr5 29180058 29180175 -123357084 - MTD LTR MaLR -289 130 14 2 807 189 94 0 0 chr5 29180210 29180242 -123357017 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 807 640 268 142 18 chr5 29181829 29182100 -123355159 - MLT-int LTR MaLR 0 1735 1431 2 807 636 287 76 0 chr5 29182100 29182257 -123355002 + ID_B1 SINE B4 2 170 -54 2 807 869 235 60 5 chr5 29182357 29182541 -123354718 + B3 SINE B2 22 215 -1 2 807 300 53 0 0 chr5 29182642 29182680 -123354579 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 807 447 19 0 0 chr5 29185872 29185924 -123351335 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 807 241 215 36 45 chr5 29186089 29186201 -123351058 + (TATG)n Simple_repeat Simple_repeat 4 114 0 2 807 216 0 0 0 chr5 29186213 29186237 -123351022 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 807 341 331 339 24 chr5 29187649 29188032 -123349227 + MLT1E1 LTR MaLR 124 627 0 2 807 797 302 80 49 chr5 29189370 29189618 -123347641 - MLT1C LTR MaLR -43 424 168 2 807 1037 230 139 27 chr5 29189618 29189949 -123347310 + ORR1D2 LTR MaLR 1 368 -2 2 807 797 302 80 49 chr5 29189949 29190087 -123347172 - MLT1C LTR MaLR -300 167 26 2 807 332 244 165 0 chr5 29192870 29192985 -123344274 + MLT1A0 LTR MaLR 8 141 -224 2 807 674 214 155 0 chr5 29194033 29194220 -123343039 + B3 SINE B2 1 216 0 2 807 206 267 0 0 chr5 29194352 29194397 -123342862 + (TATG)n Simple_repeat Simple_repeat 1 45 0 2 807 379 315 50 29 chr5 29194857 29195096 -123342163 - L1MA6 LINE L1 -3 6297 6054 2 807 474 284 59 63 chr5 29195152 29195374 -123341885 - ORR1E LTR MaLR -7 352 132 2 807 468 0 0 0 chr5 29196425 29196477 -123340782 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 807 399 291 60 52 chr5 29196662 29196796 -123340463 + ID_B1 SINE B4 57 191 -33 2 807 620 103 7 42 chr5 29196804 29196880 -123340379 + polypurine Low_complexity Low_complexity 2 75 0 2 807 1259 79 0 6 chr5 29196880 29197058 -123340201 + (GGA)n Simple_repeat Simple_repeat 2 178 0 2 807 620 103 7 42 chr5 29197058 29197104 -123340155 + polypurine Low_complexity Low_complexity 76 120 0 2 807 1055 102 11 11 chr5 29197104 29197283 -123339976 + (GAA)n Simple_repeat Simple_repeat 1 179 0 2 807 620 103 7 42 chr5 29197283 29197301 -123339958 + polypurine Low_complexity Low_complexity 121 137 0 2 807 441 0 0 0 chr5 29201962 29202011 -123335248 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 807 273 29 0 0 chr5 29202547 29202581 -123334678 + (A)n Simple_repeat Simple_repeat 1 34 0 2 807 465 19 0 0 chr5 29203820 29203874 -123333385 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 807 13279 3 0 1 chr5 29204282 29206448 -123330811 - L1Md_A LINE L1 0 6582 4420 2 807 8295 2 0 0 chr5 29206426 29207350 -123329909 + L1Md_A LINE L1 3507 4430 -1453 2 807 269 310 39 39 chr5 29208469 29208573 -123328686 + B4 SINE B4 45 148 -144 2 807 941 281 106 69 chr5 29209244 29209604 -123327655 + MTEb LTR MaLR 1 373 -6 2 807 793 269 70 31 chr5 29210109 29210366 -123326893 - RMER1C Other Other -549 793 527 2 807 688 285 38 22 chr5 29210537 29210720 -123326539 - B3 SINE B2 -28 188 3 2 807 641 303 50 6 chr5 29211073 29211252 -123326007 - ID_B1 SINE B4 -34 190 4 2 807 328 252 34 134 chr5 29212447 29212534 -123324725 + MT2B LTR ERVL 19 87 -514 2 807 516 260 16 24 chr5 29212534 29212660 -123324599 + B1F1 SINE Alu 4 128 -21 2 807 180 273 42 70 chr5 29213608 29213679 -123323580 - MIRc SINE MIR -198 70 2 2 807 189 74 0 0 chr5 29214532 29214559 -123322700 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 2 807 231 88 0 0 chr5 29214559 29214593 -123322666 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 2 807 1096 112 6 11 chr5 29214593 29214774 -123322485 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 807 453 301 157 10 chr5 29214894 29215319 -123321940 + L1M4 LINE L1 4808 5294 -852 2 807 393 250 87 0 chr5 29215549 29215641 -123321618 + PB1D10 SINE Alu 6 105 -12 2 807 750 234 137 49 chr5 29215682 29215988 -123321271 + L1M4 LINE L1 3852 4184 -1962 2 807 780 260 217 10 chr5 29216116 29216415 -123320844 + MLT1B LTR MaLR 23 383 -7 2 807 378 0 0 0 chr5 29216682 29216724 -123320535 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 807 1025 90 6 70 chr5 29216738 29216894 -123320365 - B1_Mus2 SINE Alu 0 147 2 2 807 442 191 76 0 chr5 29216937 29217042 -123320217 - L1MD3 LINE L1 -1178 6817 6705 2 807 662 292 17 29 chr5 29217550 29217723 -123319536 + B4A SINE B4 122 292 0 2 807 465 287 55 114 chr5 29220162 29220469 -123316790 + B4 SINE B4 4 292 0 2 807 25 0 0 0 chr5 29220472 29220497 -123316762 + GC_rich Low_complexity Low_complexity 1 25 0 2 807 445 240 10 0 chr5 29220705 29220805 -123316454 + PB1D10 SINE Alu 15 115 -2 2 807 297 227 230 26 chr5 29220805 29220818 -123316441 + B4A SINE B4 100 235 -57 2 807 328 165 27 73 chr5 29221382 29221532 -123315727 + (CAGTG)n Simple_repeat Simple_repeat 3 145 0 2 807 1522 248 110 62 chr5 29221831 29223179 -123314080 - L1MA9 LINE L1 -205 6107 4600 2 807 518 244 36 24 chr5 29223363 29223531 -123313728 - L1MA6 LINE L1 -711 5589 5420 2 807 463 287 204 26 chr5 29223544 29224127 -123313132 + L1MA6 LINE L1 5593 6294 -6 2 807 2744 188 73 15 chr5 29225413 29225948 -123311311 + Lx5 LINE L1 6478 7043 -7 2 807 294 204 96 61 chr5 29225999 29226114 -123311145 - Lx8 LINE L1 0 7473 7355 2 807 216 0 0 0 chr5 29226115 29226139 -123311120 + (A)n Simple_repeat Simple_repeat 1 24 0 2 807 1313 216 119 0 chr5 29226205 29226525 -123310734 + ORR1D1 LTR MaLR 17 374 0 2 807 392 249 122 13 chr5 29226588 29226772 -123310487 - L1M2 LINE L1 -666 5490 5287 2 807 414 0 0 0 chr5 29226825 29226871 -123310388 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 807 1537 216 124 3 chr5 29227172 29227534 -123309725 - MTD LTR MaLR -1 418 13 2 807 840 197 92 19 chr5 29227561 29227768 -123309491 + MTD LTR MaLR 172 393 -26 2 807 282 29 0 0 chr5 29227888 29227923 -123309336 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 808 977 244 62 133 chr5 29229198 29229604 -123307655 + MTE2b LTR MaLR 3 379 0 2 808 304 265 118 0 chr5 29232539 29232641 -123304618 + RMER15 LTR ERVL 462 575 0 2 808 384 209 0 0 chr5 29234742 29234833 -123302426 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 808 650 274 171 12 chr5 29234873 29235124 -123302135 - B4 SINE B4 0 292 2 2 808 294 29 0 0 chr5 29235943 29235978 -123301281 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 808 487 288 50 43 chr5 29236227 29236584 -123300675 + L1MC LINE L1 5098 5460 -704 3 808 295 286 36 0 chr5 29237125 29237237 -123300022 + RMER15 LTR ERVL 416 531 -44 3 808 973 198 54 5 chr5 29237695 29237898 -123299361 + B3 SINE B2 1 213 -3 3 808 422 294 119 0 chr5 29237904 29238030 -123299229 - B1_Mm SINE Alu -5 142 2 3 808 1335 34 6 11 chr5 29238153 29238330 -123298929 + L1Md_F2 LINE L1 6407 6582 0 3 808 42 0 0 0 chr5 29238330 29238372 -123298887 + AT_rich Low_complexity Low_complexity 1 42 0 3 808 738 121 57 0 chr5 29242792 29242932 -123294327 - URR1A DNA MER1_type 0 226 79 3 808 343 315 92 8 chr5 29243456 29243587 -123293672 - B1F1 SINE Alu -7 142 1 3 808 411 100 0 0 chr5 29243992 29244062 -123293197 + (A)n Simple_repeat Simple_repeat 1 70 0 3 808 237 33 0 0 chr5 29244124 29244154 -123293105 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 808 2224 79 3 0 chr5 29246979 29247270 -123289989 + L1_Mus2 LINE L1 6275 6566 0 3 808 6478 40 1 9 chr5 29247911 29248687 -123288572 + L1_Mus1 LINE L1 5798 6567 0 3 808 546 180 205 0 chr5 29248931 29249053 -123288206 - B1_Mus2 SINE Alu 0 147 1 3 808 1334 242 115 35 chr5 29249433 29249895 -123287364 - MT2A LTR ERVL 0 533 35 3 808 1561 218 37 11 chr5 29250823 29251176 -123286083 + ORR1D1 LTR MaLR 7 368 -6 3 808 317 245 76 68 chr5 29251173 29251291 -123285968 - MTEa LTR MaLR -70 309 191 3 808 8960 34 8 1 chr5 29252325 29253466 -123283793 + L1Md_F2 LINE L1 4814 5959 -623 3 808 275 308 101 32 chr5 29253653 29253841 -123283418 - MLT2C1 LTR ERVL -52 345 145 3 808 230 259 0 8 chr5 29254027 29254144 -123283115 + (CA)n Simple_repeat Simple_repeat 1 116 0 3 808 209 231 15 15 chr5 29254148 29254214 -123283045 + (CATA)n Simple_repeat Simple_repeat 2 67 0 3 808 504 48 0 0 chr5 29254219 29254282 -123282977 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 808 240 150 0 0 chr5 29254436 29254452 -123282807 + (GGAA)n Simple_repeat Simple_repeat 4 19 0 3 808 1044 102 17 11 chr5 29254452 29254630 -123282629 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 3 808 240 150 0 0 chr5 29254630 29254653 -123282606 + (GGAA)n Simple_repeat Simple_repeat 4 26 0 3 808 785 144 29 11 chr5 29254653 29254765 -123282494 + polypurine Low_complexity Low_complexity 1 117 0 3 808 1075 114 11 0 chr5 29254765 29254940 -123282319 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 3 808 785 144 29 11 chr5 29254940 29255002 -123282257 + polypurine Low_complexity Low_complexity 118 177 0 3 808 1004 107 11 22 chr5 29255008 29255189 -123282070 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 3 808 258 266 38 12 chr5 29256012 29256092 -123281167 + ID SINE ID 2 83 -141 3 808 467 154 29 22 chr5 29257594 29257733 -123279526 + (CA)n Simple_repeat Simple_repeat 2 141 0 3 808 282 136 0 0 chr5 29260955 29260999 -123276260 + ID2 SINE ID 3 46 -37 3 808 309 365 40 0 chr5 29261085 29261233 -123276026 - MIR3 SINE MIR -21 187 34 3 808 288 246 0 24 chr5 29261339 29261464 -123275795 + GA-rich Low_complexity Low_complexity 1 122 0 3 808 503 331 7 0 chr5 29263781 29263926 -123273333 + RSINE1 SINE B4 11 156 -9 3 808 1137 277 110 48 chr5 29264076 29264784 -123272475 - L1MA4 LINE L1 -434 5866 5098 3 808 234 173 40 0 chr5 29264863 29264938 -123272321 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 3 808 2644 131 9 28 chr5 29264990 29265452 -123271807 + RLTR11A LTR ERVK 76 528 0 3 808 642 198 0 0 chr5 29265452 29265573 -123271686 + ORR1D1 LTR MaLR 34 154 -220 3 808 1600 75 22 0 chr5 29265573 29265799 -123271460 + MT2C_Mm LTR ERVL 1 231 -244 3 808 303 28 0 0 chr5 29265807 29265843 -123271416 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 808 545 28 0 0 chr5 29265850 29265922 -123271337 - B1_Mm SINE Alu -1 146 75 3 808 223 181 40 40 chr5 29265922 29265997 -123271262 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 3 808 228 216 0 0 chr5 29266800 29266851 -123270408 + (TTA)n Simple_repeat Simple_repeat 3 53 0 3 808 380 250 53 30 chr5 29266853 29266985 -123270274 - Lx6 LINE L1 -33 7427 7293 3 808 555 240 85 27 chr5 29267752 29267940 -123269319 - L1M7 LINE L1 -5978 240 42 3 808 909 98 10 148 chr5 29268529 29268732 -123268527 + B2_Mm2 SINE B2 1 175 -20 3 808 279 0 0 0 chr5 29272083 29272114 -123265145 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 808 202 236 18 0 chr5 29275872 29275927 -123261332 + (TTG)n Simple_repeat Simple_repeat 2 57 0 3 808 12505 143 9 8 chr5 29276070 29278909 -123258350 + Lx LINE L1 3805 6647 -7 3 808 420 324 41 50 chr5 29279074 29279227 -123258032 - L1MA4 LINE L1 -207 5964 5809 3 808 3617 15 0 0 chr5 29279227 29279623 -123257636 - MTA_Mm LTR MaLR 0 396 1 3 808 9201 36 4 1 chr5 29279623 29280718 -123256541 - MTA_Mm-int LTR MaLR 0 1098 1 3 808 3600 18 0 0 chr5 29280718 29281114 -123256145 - MTA_Mm LTR MaLR 0 396 1 3 808 420 324 5 52 chr5 29281114 29281179 -123256080 - L1MA4 LINE L1 -492 5808 5748 3 808 398 324 89 26 chr5 29281293 29281673 -123255586 + L1M5 LINE L1 3927 4330 -1816 3 808 255 333 9 9 chr5 29281947 29282056 -123255203 + LTR16E1 LTR ERVL 411 519 -19 3 808 427 235 87 14 chr5 29282136 29282274 -123254985 + L1M5 LINE L1 4529 4676 -1470 3 808 860 277 93 58 chr5 29282368 29282732 -123254527 + MTEb LTR MaLR 1 377 -2 3 808 234 202 32 40 chr5 29283984 29284108 -123253151 + GA-rich Low_complexity Low_complexity 4 126 0 3 808 1784 151 73 9 chr5 29284347 29284688 -123252571 - ORR1C2 LTR MaLR -2 382 20 3 808 31 44 0 0 chr5 29284717 29284762 -123252497 + AT_rich Low_complexity Low_complexity 1 45 0 3 808 1546 161 8 4 chr5 29284767 29285028 -123252231 - Lx5 LINE L1 -3 7047 6786 3 808 2779 181 49 19 chr5 29285032 29285562 -123251697 - Lx5 LINE L1 -500 6550 6005 3 808 569 292 0 96 chr5 29286210 29286418 -123250841 - B3A SINE B2 -5 193 6 3 808 207 0 0 0 chr5 29286449 29286472 -123250787 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 3 808 181 118 19 19 chr5 29286798 29286850 -123250409 + (TATAA)n Simple_repeat Simple_repeat 1 52 0 3 808 536 0 16 0 chr5 29286859 29286923 -123250336 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 3 808 31487 79 11 7 chr5 29289300 29291513 -123245746 - L1_Mus1 LINE L1 -6 6561 4343 3 808 1082 83 14 0 chr5 29291513 29291657 -123245602 - B1_Mm SINE Alu -1 146 1 3 808 31487 110 38 11 chr5 29291657 29295506 -123241753 - L1_Mus1 LINE L1 -1541 4342 380 3 808 207 0 0 0 chr5 29296634 29296657 -123240602 + (T)n Simple_repeat Simple_repeat 1 23 0 3 808 620 311 28 28 chr5 29296969 29297184 -123240075 - ID_B1 SINE B4 -5 219 5 3 808 611 283 80 31 chr5 29297448 29297674 -123239585 - B4 SINE B4 -51 241 5 3 808 261 341 132 37 chr5 29298452 29298641 -123238618 - LTR81B LTR ERV1? -430 963 757 3 808 289 282 71 26 chr5 29299252 29299537 -123237722 - L1MEf LINE L1 -1665 4481 4179 3 808 339 25 0 0 chr5 29299537 29299577 -123237682 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 808 267 283 100 42 chr5 29299577 29299601 -123237658 - L1MEf LINE L1 -1968 4178 4155 3 808 381 329 182 25 chr5 29299737 29300684 -123236575 - L1MEf LINE L1 -2164 3982 2888 3 808 250 307 144 11 chr5 29301305 29301575 -123235684 - L1MEf LINE L1 -4063 2179 1874 3 808 269 210 123 0 chr5 29301586 29301667 -123235592 - Lx6 LINE L1 -26 7434 7344 3 808 858 227 21 54 chr5 29302656 29302752 -123234507 + MTE2a LTR MaLR 1 80 -339 3 808 2432 52 0 27 chr5 29302752 29303094 -123234165 + L1Md_F2 LINE L1 6277 6582 0 3 808 1024 245 40 70 chr5 29303094 29303436 -123233823 + MTE2a LTR MaLR 57 404 -15 3 808 24 32 0 0 chr5 29304051 29304082 -123233177 + AT_rich Low_complexity Low_complexity 1 31 0 3 808 9078 72 11 13 chr5 29304179 29304233 -123233026 + L1_Mus1 LINE L1 4670 4736 -1147 3 808 189 0 0 0 chr5 29304233 29304254 -123233005 + (CAA)n Simple_repeat Simple_repeat 2 22 0 3 808 9078 73 8 10 chr5 29304254 29306104 -123231155 + L1_Mus1 LINE L1 4737 6567 0 3 808 269 320 87 48 chr5 29307892 29308099 -123229160 - ORR1D2 LTR MaLR -13 357 143 3 808 225 0 0 0 chr5 29308791 29308816 -123228443 + (T)n Simple_repeat Simple_repeat 1 25 0 3 808 186 43 0 0 chr5 29309263 29309286 -123227973 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 808 206 103 0 49 chr5 29309813 29309854 -123227405 + T-rich Low_complexity Low_complexity 2 40 0 3 808 593 90 11 0 chr5 29310367 29310456 -123226803 + (TC)n Simple_repeat Simple_repeat 1 90 0 3 808 3203 130 20 23 chr5 29310485 29311046 -123226213 - ORR1A3-int LTR MaLR -1403 560 2 3 808 2079 111 65 0 chr5 29311047 29311353 -123225906 - ORR1A3 LTR MaLR 0 326 1 3 808 362 206 172 22 chr5 29311860 29311994 -123225265 - MLT1A1 LTR MaLR -1 407 254 3 808 244 263 0 0 chr5 29312104 29312161 -123225098 - MLT1A1 LTR MaLR -308 100 44 3 808 770 178 0 0 chr5 29312161 29312290 -123224969 + B3 SINE B2 2 130 -86 3 808 919 272 90 30 chr5 29312358 29312657 -123224602 + MTEa LTR MaLR 1 317 -62 3 808 600 323 210 33 chr5 29312657 29312990 -123224269 + MTD LTR MaLR 1 392 -27 3 808 23 0 0 0 chr5 29313044 29313067 -123224192 + AT_rich Low_complexity Low_complexity 1 23 0 3 808 419 212 19 39 chr5 29313120 29313223 -123224036 - B3 SINE B2 -112 104 4 3 808 627 309 204 7 chr5 29313355 29313792 -123223467 - MLT-int LTR MaLR -27 1708 1186 3 808 411 297 78 31 chr5 29315562 29315753 -123221506 + RMER30 DNA MER1_type 2 201 -1 3 808 195 256 0 0 chr5 29316142 29316275 -123220984 + (TAGA)n Simple_repeat Simple_repeat 4 136 0 3 808 318 237 148 32 chr5 29316451 29316640 -123220619 + MLT2B4 LTR ERVL 366 561 -1 3 808 25 0 0 0 chr5 29316864 29316889 -123220370 + AT_rich Low_complexity Low_complexity 1 25 0 3 808 26 0 0 0 chr5 29316941 29316967 -123220292 + AT_rich Low_complexity Low_complexity 1 26 0 3 808 1556 157 61 35 chr5 29317026 29317336 -123219923 + Lx5 LINE L1 6733 7050 0 3 808 1226 49 0 0 chr5 29317445 29317588 -123219671 + B1_Mus1 SINE Alu 1 143 -5 3 808 1989 247 63 24 chr5 29317715 29318198 -123219061 - Lx7 LINE L1 -333 7363 6858 3 808 3444 28 5 0 chr5 29318198 29318592 -123218667 - MTA_Mm LTR MaLR 0 396 1 3 808 1989 247 63 24 chr5 29318592 29318647 -123218612 - Lx7 LINE L1 -839 6857 6804 3 808 240 59 0 0 chr5 29318679 29318713 -123218546 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 3 808 920 242 15 0 chr5 29318714 29318912 -123218347 - B3 SINE B2 -14 202 2 3 808 640 310 171 23 chr5 29319792 29319938 -123217321 - ORR1D2 LTR MaLR 0 359 166 4 808 645 14 0 0 chr5 29319938 29320012 -123217247 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 4 808 640 310 171 23 chr5 29320012 29320175 -123217084 - ORR1D2 LTR MaLR -184 175 4 4 808 32406 91 12 6 chr5 29320455 29324955 -123212304 - L1_Mus1 LINE L1 -2 6565 2047 4 808 429 20 0 0 chr5 29324955 29325005 -123212254 + (TTTC)n Simple_repeat Simple_repeat 4 53 0 4 808 32406 77 6 2 chr5 29325005 29326816 -123210443 - L1_Mus1 LINE L1 -3837 2046 217 4 808 348 314 101 8 chr5 29327217 29327308 -123209951 + ORR1D2 LTR MaLR 74 165 -205 4 808 417 44 14 29 chr5 29327308 29327378 -123209881 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 4 808 350 240 511 10 chr5 29327378 29327499 -123209760 + ORR1D2 LTR MaLR 166 355 -15 4 808 198 0 0 0 chr5 29330459 29330481 -123206778 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 808 473 265 132 74 chr5 29330486 29330743 -123206516 - B4 SINE B4 -20 272 1 4 808 699 139 0 0 chr5 29331268 29331383 -123205876 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 4 808 345 24 0 0 chr5 29332141 29332183 -123205076 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 808 772 223 82 104 chr5 29332185 29332465 -123204794 - B4A SINE B4 -18 274 1 4 808 527 147 0 10 chr5 29333235 29333338 -123203921 + GA-rich Low_complexity Low_complexity 2 103 0 4 808 466 47 109 0 chr5 29333445 29333573 -123203686 + GA-rich Low_complexity Low_complexity 2 143 0 4 808 1507 79 10 5 chr5 29336011 29336266 -123200993 - L1_Mm LINE L1 -1889 2025 1765 4 808 256 328 16 16 chr5 29339385 29339512 -123197747 + (TGG)n Simple_repeat Simple_repeat 1 127 0 4 808 427 341 12 0 chr5 29339542 29339709 -123197550 + (TGG)n Simple_repeat Simple_repeat 3 171 0 4 808 210 379 0 8 chr5 29339946 29340079 -123197180 + (TGG)n Simple_repeat Simple_repeat 2 133 0 4 808 410 320 144 12 chr5 29341457 29341707 -123195552 + MLT1A0 LTR MaLR 24 306 -68 4 808 249 241 17 0 chr5 29341707 29341765 -123195494 + GA-rich Low_complexity Low_complexity 4 62 0 4 808 1434 71 3 7 chr5 29341767 29342070 -123195189 + (GGGA)n Simple_repeat Simple_repeat 1 302 0 4 808 417 353 51 35 chr5 29342078 29342275 -123194984 + MLT2B1 LTR ERVL 253 452 -68 4 808 673 293 24 3 chr5 29342957 29343143 -123194116 - B3 SINE B2 -13 185 1 4 808 797 321 14 18 chr5 29343195 29343474 -123193785 - B4A SINE B4 -14 278 1 4 808 21 0 0 0 chr5 29345484 29345505 -123191754 + AT_rich Low_complexity Low_complexity 1 21 0 4 808 252 162 14 56 chr5 29345653 29345725 -123191534 + T-rich Low_complexity Low_complexity 3 71 0 4 808 956 282 23 19 chr5 29345738 29346002 -123191257 + B4 SINE B4 1 265 -27 4 808 432 0 0 0 chr5 29346006 29346054 -123191205 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 808 409 263 55 21 chr5 29346669 29346890 -123190369 - MIR SINE MIR -30 238 3 4 808 297 51 0 0 chr5 29347138 29347177 -123190082 + (CATA)n Simple_repeat Simple_repeat 1 39 0 4 808 2873 126 107 8 chr5 29350298 29350794 -123186465 - Lx4A LINE L1 0 7058 6514 4 808 801 109 30 21 chr5 29350889 29351129 -123186130 + CT-rich Low_complexity Low_complexity 1 242 0 4 808 433 271 84 26 chr5 29351211 29351403 -123185856 - B3 SINE B2 0 216 6 4 808 263 207 357 9 chr5 29354005 29354047 -123183212 + B3A SINE B2 1 42 -156 4 808 1689 221 60 57 chr5 29354047 29354465 -123182794 - MTD LTR MaLR 0 419 1 4 808 263 207 357 9 chr5 29354465 29354534 -123182725 + B3A SINE B2 43 151 -47 4 808 324 0 0 0 chr5 29354543 29354579 -123182680 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 808 261 0 0 0 chr5 29355464 29355493 -123181766 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 808 744 33 0 0 chr5 29355493 29355583 -123181676 + (TG)n Simple_repeat Simple_repeat 2 92 0 4 808 741 255 199 28 chr5 29355662 29356098 -123181161 + L1MB3 LINE L1 5662 6183 0 4 808 299 145 0 14 chr5 29357354 29357424 -123179835 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 808 495 139 0 0 chr5 29357409 29357510 -123179749 + (CAGA)n Simple_repeat Simple_repeat 4 104 0 4 808 913 278 4 17 chr5 29358277 29358511 -123178748 + B4A SINE B4 2 232 -60 4 809 234 0 0 0 chr5 29362639 29362665 -123174594 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 809 374 333 77 13 chr5 29362685 29362840 -123174419 - RSINE1 SINE B4 0 165 1 4 809 326 232 111 0 chr5 29362857 29362956 -123174303 - PB1D7 SINE Alu -3 117 8 4 809 288 0 0 0 chr5 29363472 29363504 -123173755 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 809 215 188 42 0 chr5 29363504 29363552 -123173707 + (CTCG)n Simple_repeat Simple_repeat 4 53 0 4 809 608 291 14 5 chr5 29364159 29364180 -123173079 - Lx4B LINE L1 -391 6667 6646 4 809 1505 112 0 9 chr5 29364180 29364405 -123172854 - Lx2 LINE L1 0 6997 6775 4 809 1512 73 0 0 chr5 29364405 29364596 -123172663 - Lx2 LINE L1 -354 6643 6453 4 809 536 42 0 0 chr5 29364596 29364667 -123172592 + L1_Mus1 LINE L1 6497 6567 0 4 809 11281 161 25 12 chr5 29364683 29366122 -123171137 - L1_Mur2 LINE L1 -949 4928 3476 4 809 1705 77 143 12 chr5 29366122 29366177 -123171082 - L1Md_F2 LINE L1 -12 6570 6509 4 809 198 0 0 0 chr5 29366177 29366199 -123171060 + (CCA)n Simple_repeat Simple_repeat 3 24 0 4 809 1705 77 143 12 chr5 29366199 29366394 -123170865 - L1Md_F2 LINE L1 -74 6508 6288 4 809 11281 161 25 12 chr5 29366394 29367043 -123170216 - L1_Mur2 LINE L1 -2402 3475 2813 4 809 25005 49 11 31 chr5 29367047 29367730 -123169529 - MMETn-int LTR ERVK -1619 3225 2557 4 809 6026 50 4 0 chr5 29367730 29368458 -123168801 + L1Md_F2 LINE L1 5852 6582 0 4 809 25005 49 11 31 chr5 29368458 29368645 -123168614 - MMETn-int LTR ERVK -2288 2556 2378 4 809 207 0 0 0 chr5 29368645 29368668 -123168591 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 4 809 25005 49 11 31 chr5 29368668 29370083 -123167176 - MMETn-int LTR ERVK -2467 2377 985 4 809 2217 35 4 0 chr5 29370083 29370344 -123166915 - L1Md_T LINE L1 -1 6581 6320 4 809 25005 49 11 31 chr5 29370344 29371347 -123165912 - MMETn-int LTR ERVK -3860 984 5 4 809 2009 113 9 51 chr5 29371349 29371685 -123165574 - RLTRETN_Mm LTR ERVK 0 322 1 4 809 5688 73 45 2 chr5 29371692 29372663 -123164596 - L1VL4 LINE L1 -1849 1710 694 4 809 200 86 0 28 chr5 29372665 29372701 -123164558 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 809 21273 111 17 20 chr5 29372701 29374022 -123163237 - L1_Mus3 LINE L1 -8 6630 5330 4 809 315 0 0 0 chr5 29374022 29374057 -123163202 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 809 21273 180 32 76 chr5 29374057 29374099 -123163160 - L1_Mus3 LINE L1 -557 5329 5324 4 809 942 39 23 0 chr5 29374099 29374229 -123163030 - L1Md_F3 LINE L1 -1 6583 6451 4 809 21273 180 32 76 chr5 29374229 29378408 -123158851 - L1_Mus3 LINE L1 -563 5323 1301 4 809 2743 102 18 2 chr5 29378408 29378802 -123158457 + MTB LTR MaLR 1 400 0 4 809 21273 195 15 27 chr5 29378802 29379554 -123157705 - L1_Mus3 LINE L1 -5357 1300 549 4 809 676 290 44 83 chr5 29379564 29379925 -123157334 + L1MB5 LINE L1 5828 6174 0 4 809 1323 227 30 72 chr5 29380054 29380482 -123156777 + RMER17C LTR ERVK 1 410 0 4 809 997 221 158 78 chr5 29380491 29381142 -123156117 + RMER17C-int LTR ERVK 9 711 -2527 4 809 294 216 0 0 chr5 29381298 29381349 -123155910 + RMER17C-int LTR ERVK 1100 1150 -2088 4 809 773 84 40 8 chr5 29381349 29381486 -123155773 - L1Md_F2 LINE L1 -322 6260 6123 4 809 1806 55 88 62 chr5 29381486 29381742 -123155517 + ORR1A1 LTR MaLR 24 292 -54 4 809 321 89 0 0 chr5 29381742 29381787 -123155472 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 809 1806 55 88 62 chr5 29381787 29381837 -123155422 + ORR1A1 LTR MaLR 293 338 -8 4 809 4852 42 0 2 chr5 29381953 29382533 -123154726 - L1Md_T LINE L1 0 6582 6004 4 809 39098 38 1 3 chr5 29382537 29388970 -123148289 - L1Md_A LINE L1 0 6585 73 4 809 1685 167 51 66 chr5 29389726 29390060 -123147199 + ORR1A4 LTR MaLR 1 329 0 4 809 5039 52 22 33 chr5 29391631 29392265 -123144994 + L1Md_F2 LINE L1 5945 6571 -11 4 809 320 279 35 11 chr5 29392269 29392356 -123144903 - B1F SINE Alu -36 113 25 4 809 823 156 203 5 chr5 29392514 29392701 -123144558 - URR1B DNA MER1_type -1 224 1 4 809 6413 21 1 0 chr5 29393212 29393940 -123143319 + L1Md_T LINE L1 4857 5585 -298 4 809 8179 48 26 17 chr5 29393941 29394927 -123142332 + L1Md_T LINE L1 5587 6581 -1 4 809 563 263 225 13 chr5 29395355 29395586 -123141673 + RMER15 LTR ERVL 294 573 -2 4 809 227 300 89 32 chr5 29395816 29395940 -123141319 - MER5B DNA MER1_type 0 178 48 4 809 198 0 0 0 chr5 29395945 29395967 -123141292 + (A)n Simple_repeat Simple_repeat 1 22 0 4 809 230 258 97 0 chr5 29396033 29396115 -123141144 + B1_Mus1 SINE Alu 15 111 -6 4 809 311 250 92 9 chr5 29396385 29396494 -123140765 - L1M2 LINE L1 -3281 2862 2745 4 809 29884 110 25 4 chr5 29397150 29402664 -123134595 + L1_Mus1 LINE L1 924 6567 0 4 809 759 285 57 43 chr5 29402690 29402899 -123134360 + B3A SINE B2 5 216 0 4 809 396 0 0 0 chr5 29402967 29403011 -123134248 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 809 330 328 159 51 chr5 29403082 29403397 -123133862 + ORR1E LTR MaLR 7 355 -4 4 809 576 213 23 47 chr5 29403475 29403603 -123133656 - MTE2b LTR MaLR -14 365 241 4 809 582 28 0 0 chr5 29403622 29403694 -123133565 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 809 232 318 11 11 chr5 29403807 29403896 -123133363 - MT2A LTR ERVL -443 90 2 4 809 375 294 122 14 chr5 29404080 29404228 -123133031 + Lx7 LINE L1 7168 7331 -365 4 809 1140 94 82 0 chr5 29404340 29404510 -123132749 - L1_Mus2 LINE L1 0 6566 6383 4 809 967 71 92 0 chr5 29404518 29404659 -123132600 + L1_Mus3 LINE L1 5731 5884 -754 4 809 344 258 161 0 chr5 29404658 29404751 -123132508 - Lx7 LINE L1 -421 7275 7168 4 809 10366 84 3 0 chr5 29404938 29406857 -123130402 - L1_Mus2 LINE L1 -186 6380 4455 4 809 243 84 7 0 chr5 29406838 29406900 -123130359 + L1_Mus2 LINE L1 6520 6582 0 4 809 1437 323 50 41 chr5 29406901 29407463 -123129796 + MTE-int LTR MaLR 580 1146 -434 4 809 330 26 0 0 chr5 29407499 29407538 -123129721 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 809 588 65 0 0 chr5 29407538 29407615 -123129644 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 809 240 247 55 0 chr5 29408069 29408142 -123129117 + MER45A DNA Tip100 78 154 -24 4 809 349 212 10 39 chr5 29408700 29408803 -123128456 - L1MA9 LINE L1 0 6312 6213 4 809 679 273 112 27 chr5 29409334 29409522 -123127737 + B3 SINE B2 2 205 -11 4 809 239 336 54 9 chr5 29409596 29409707 -123127552 + L2a LINE L2 3046 3161 -265 4 809 345 24 0 0 chr5 29410452 29410494 -123126765 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 809 465 19 0 0 chr5 29411118 29411172 -123126087 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 809 221 236 0 0 chr5 29412116 29412171 -123125088 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 809 299 321 6 12 chr5 29413128 29413295 -123123964 + (CA)n Simple_repeat Simple_repeat 2 167 0 5 809 214 317 7 21 chr5 29413357 29413502 -123123757 + (CA)n Simple_repeat Simple_repeat 1 143 0 5 809 3258 43 51 0 chr5 29415632 29416023 -123121236 + RLTR10A LTR ERVK 1 411 0 5 809 1066 209 61 24 chr5 29416419 29416712 -123120547 - MTEb LTR MaLR -14 365 1 5 809 263 224 14 29 chr5 29418408 29418477 -123118782 - MTEb LTR MaLR -25 354 287 5 809 391 310 18 0 chr5 29418760 29418873 -123118386 + Tigger5 DNA MER2_type 2290 2404 -2 5 809 303 332 21 107 chr5 29419441 29419684 -123117575 + L1M4b LINE L1 1337 1558 -5776 5 809 256 207 225 43 chr5 29419711 29419975 -123117284 + L1M4b LINE L1 1660 1979 -5029 5 809 475 316 77 103 chr5 29420644 29421591 -123115668 + L1M4b LINE L1 2971 3892 -3114 5 809 2336 202 24 22 chr5 29421916 29422666 -123114593 + L1_Mur2 LINE L1 916 1614 -4263 5 809 4289 48 0 0 chr5 29422666 29423141 -123114118 + MT2C_Mm LTR ERVL 1 475 0 5 809 2336 181 12 14 chr5 29423141 29423239 -123114020 + L1_Mur2 LINE L1 1615 1707 -4170 5 809 2574 81 0 0 chr5 29423250 29423585 -123113674 - L1_Mus1 LINE L1 -849 5034 4700 5 809 7543 78 5 5 chr5 29423586 29425118 -123112141 + L1_Mus1 LINE L1 5036 6567 0 5 809 12276 178 21 40 chr5 29425215 29425546 -123111713 + L1_Mur2 LINE L1 1717 2050 -3827 5 809 207 0 0 0 chr5 29425546 29425569 -123111690 + (GA)n Simple_repeat Simple_repeat 1 23 0 5 809 207 0 0 0 chr5 29425569 29425591 -123111668 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 809 12276 178 21 40 chr5 29425591 29425602 -123111657 + L1_Mur2 LINE L1 2051 2058 -3819 5 809 243 0 0 0 chr5 29425602 29425629 -123111630 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 5 809 12276 178 21 40 chr5 29425629 29426872 -123110387 + L1_Mur2 LINE L1 2059 3329 -2548 5 809 2974 91 29 12 chr5 29426872 29427000 -123110259 + BGLII LTR ERVK 1 128 -293 5 809 369 0 0 0 chr5 29427000 29427041 -123110218 + (GA)n Simple_repeat Simple_repeat 2 42 0 5 809 2974 91 29 12 chr5 29427041 29427326 -123109933 + BGLII LTR ERVK 129 421 0 5 809 12276 178 21 40 chr5 29427326 29427422 -123109837 + L1_Mur2 LINE L1 3330 3418 -2459 5 809 1288 28 0 0 chr5 29427422 29427564 -123109695 + B1_Mm SINE Alu 5 146 -1 5 809 12276 178 21 40 chr5 29427564 29428448 -123108811 + L1_Mur2 LINE L1 3419 4235 -1642 5 809 4113 247 71 48 chr5 29428447 29428590 -123108669 + Lx5 LINE L1 5684 5837 -1213 5 809 189 0 0 0 chr5 29428590 29428611 -123108648 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 809 4113 248 73 47 chr5 29428611 29429827 -123107432 + Lx5 LINE L1 5838 7460 0 5 809 256 309 51 14 chr5 29429905 29430043 -123107216 + L1MC LINE L1 3115 3257 -2889 5 809 1076 215 50 15 chr5 29430067 29430327 -123106932 + L1ME1 LINE L1 5569 5837 -342 5 809 371 178 0 10 chr5 29430461 29430563 -123106696 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 809 2997 38 15 3 chr5 29430949 29431291 -123105968 - ORR1A1 LTR MaLR 0 346 1 5 809 5401 135 11 18 chr5 29431327 29432527 -123104732 + L1Md_A LINE L1 208 1386 -4497 5 809 8256 40 1 2 chr5 29432547 29433543 -123103716 + L1Md_A LINE L1 3437 4431 -1452 5 809 2393 55 0 0 chr5 29433540 29433833 -123103426 - L1_Mm LINE L1 -1628 4255 3963 5 809 366 305 0 9 chr5 29434244 29434350 -123102909 - Lx9 LINE L1 -1199 6445 6341 5 809 280 225 25 0 chr5 29434596 29434676 -123102583 + L1_Mur3 LINE L1 4509 4590 -1290 5 809 2966 295 33 38 chr5 29434701 29435701 -123101558 + Lx8 LINE L1 6338 7332 -141 5 809 294 259 99 115 chr5 29435564 29435756 -123101503 + RMER1C Other Other 1068 1256 -86 5 809 947 231 160 39 chr5 29436524 29436563 -123100696 - MLT1B LTR MaLR -8 382 346 5 809 1974 250 31 139 chr5 29436563 29437247 -123100012 - RMER19C LTR ERVK 0 611 2 5 809 947 231 160 39 chr5 29437247 29437544 -123099715 - MLT1B LTR MaLR -45 345 5 5 809 293 62 21 0 chr5 29437891 29437939 -123099320 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 5 809 243 0 0 0 chr5 29437975 29438002 -123099257 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 5 809 639 160 117 8 chr5 29438004 29438124 -123099135 - B1_Mus2 SINE Alu -14 133 1 5 809 663 268 104 0 chr5 29438124 29438307 -123098952 - MTD LTR MaLR -209 210 9 5 809 584 325 13 0 chr5 29438340 29438494 -123098765 - RSINE1 SINE B4 -8 157 2 5 809 5123 160 57 74 chr5 29438592 29439510 -123097749 + RMER19B LTR ERVK 1 902 0 5 809 1697 269 138 22 chr5 29440238 29441488 -123095771 - Lx9 LINE L1 -178 5978 4537 5 809 2366 66 66 0 chr5 29441488 29441805 -123095454 + ORR1A1 LTR MaLR 1 338 -8 5 809 356 292 58 0 chr5 29441809 29441946 -123095313 - L1_Mur1 LINE L1 -1313 4573 4429 5 809 1417 240 12 27 chr5 29445442 29445776 -123091483 + L1_Rod LINE L1 5432 5760 -87 5 809 4193 104 24 0 chr5 29445779 29446373 -123090886 + L1VL2 LINE L1 284 891 -5444 5 809 488 246 132 35 chr5 29446382 29446634 -123090625 + L1Md_F LINE L1 503 742 -5777 5 809 2280 139 5 181 chr5 29446668 29446807 -123090452 + L1VL4 LINE L1 468 594 -5708 5 809 1171 82 7 0 chr5 29446807 29446953 -123090306 + B1_Mm SINE Alu 1 147 0 5 809 2911 110 2 83 chr5 29446953 29447727 -123089532 + L1VL4 LINE L1 595 1269 -2290 5 809 942 90 25 25 chr5 29447727 29447886 -123089373 + L1Md_F2 LINE L1 6422 6580 -2 5 809 6661 97 131 1 chr5 29447886 29448912 -123088347 + L1_Mm LINE L1 3717 4875 -1008 5 809 7684 78 0 11 chr5 29448932 29450275 -123086984 - L1_Mus1 LINE L1 0 6567 5238 5 809 5687 94 1 0 chr5 29450286 29451020 -123086239 + L1_Mus1 LINE L1 5832 6566 -1 5 809 418 141 0 0 chr5 29451209 29451273 -123085986 - Lx4B LINE L1 -346 6712 6649 5 809 1802 189 42 22 chr5 29451271 29451629 -123085630 + Lx5 LINE L1 6686 7050 0 5 809 350 264 38 0 chr5 29451653 29451773 -123085486 + L1MA7 LINE L1 6125 6258 -54 5 809 1183 221 9 0 chr5 29451805 29452018 -123085241 + B3 SINE B2 2 216 0 5 809 796 189 76 0 chr5 29452043 29452175 -123085084 - B1_Mur4 SINE Alu -8 142 1 5 809 719 265 115 65 chr5 29453077 29453355 -123083904 + B4 SINE B4 1 292 0 5 809 363 307 68 44 chr5 29453761 29454057 -123083202 + L1MEg LINE L1 597 899 -5185 5 809 404 309 16 8 chr5 29454176 29454300 -123082959 + PB1 SINE Alu 1 125 -2 5 809 4788 100 14 0 chr5 29454305 29454967 -123082292 - L1_Mus1 LINE L1 -659 5224 4554 5 809 8230 66 2 1 chr5 29454968 29456299 -123080960 + L1_Mus1 LINE L1 5235 6567 0 5 809 518 0 0 16 chr5 29457881 29457944 -123079315 + (TTTTG)n Simple_repeat Simple_repeat 4 65 0 5 809 913 152 29 0 chr5 29457945 29458083 -123079176 - B1_Mur4 SINE Alu -8 142 1 5 809 22 70 0 0 chr5 29458148 29458191 -123079068 + AT_rich Low_complexity Low_complexity 1 43 0 5 809 240 295 31 10 chr5 29458492 29458588 -123078671 + GA-rich Low_complexity Low_complexity 6 103 0 5 809 239 162 0 0 chr5 29460075 29460112 -123077147 + L1M4 LINE L1 3519 3555 -2591 5 809 530 286 213 20 chr5 29460323 29460624 -123076635 + MTE2b LTR MaLR 19 377 -2 5 809 564 229 68 0 chr5 29461622 29461740 -123075519 - B1F SINE Alu -5 144 19 5 809 313 331 71 50 chr5 29461623 29461763 -123075496 - B4A SINE B4 -71 221 79 5 809 504 0 0 0 chr5 29461840 29461896 -123075363 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 809 203 95 0 45 chr5 29461963 29462007 -123075252 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 5 809 492 294 27 34 chr5 29462010 29462158 -123075101 - ID_B1 SINE B4 0 224 78 5 809 310 315 42 32 chr5 29462256 29462351 -123074908 - B4 SINE B4 -10 282 187 5 809 300 160 0 0 chr5 29462351 29462401 -123074858 + Lx7 LINE L1 6915 6964 -732 5 809 2283 160 51 10 chr5 29462405 29462797 -123074462 + MTC LTR MaLR 1 408 -13 5 809 982 263 122 45 chr5 29462802 29463236 -123074023 + Lx7 LINE L1 6965 7440 -33 5 809 234 0 0 0 chr5 29463361 29463387 -123073872 + (T)n Simple_repeat Simple_repeat 1 26 0 5 809 212 278 78 65 chr5 29463387 29463464 -123073795 - B3A SINE B2 -116 82 5 5 809 2261 161 15 40 chr5 29463528 29463555 -123073704 + ORR1B1 LTR MaLR 1 25 -369 5 809 1203 70 0 0 chr5 29463555 29463698 -123073561 + B1_Mus2 SINE Alu 3 145 -2 5 809 2261 161 15 40 chr5 29463698 29464072 -123073187 + ORR1B1 LTR MaLR 26 392 -2 5 809 1311 218 214 6 chr5 29464477 29464814 -123072445 - MTC LTR MaLR -14 407 1 5 809 310 280 71 39 chr5 29465450 29465601 -123071658 + MLT1A0 LTR MaLR 246 408 0 5 809 3570 47 0 2 chr5 29466163 29466570 -123070689 - L1_Mus1 LINE L1 0 6567 6162 5 809 4952 43 4 2 chr5 29466570 29467307 -123069952 + L1_Mus1 LINE L1 5432 6170 -397 5 809 1222 206 54 71 chr5 29468501 29468531 -123068728 - B4 SINE B4 0 292 270 5 809 654 13 0 0 chr5 29468531 29468606 -123068653 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 809 1222 206 54 71 chr5 29468606 29468872 -123068387 - B4 SINE B4 -23 269 1 5 809 369 0 0 0 chr5 29469219 29469260 -123067999 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 809 216 132 53 0 chr5 29470133 29470171 -123067088 + GA-rich Low_complexity Low_complexity 4 43 0 5 809 335 323 146 24 chr5 29471093 29471299 -123065960 - MIRb SINE MIR 0 268 38 5 809 215 217 17 0 chr5 29471603 29471663 -123065596 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 809 593 194 6 0 chr5 29473271 29473441 -123063818 + (CA)n Simple_repeat Simple_repeat 2 172 0 5 809 195 42 0 0 chr5 29474180 29474204 -123063055 + (T)n Simple_repeat Simple_repeat 1 24 0 5 809 3452 230 144 15 chr5 29474233 29475226 -123062033 + Lx7 LINE L1 6560 7680 -16 5 809 688 74 19 0 chr5 29475244 29475352 -123061907 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 5 809 26 0 0 0 chr5 29476426 29476452 -123060807 + AT_rich Low_complexity Low_complexity 1 26 0 5 809 252 0 0 0 chr5 29476823 29476851 -123060408 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 809 973 249 29 0 chr5 29476956 29477165 -123060094 + B3 SINE B2 2 216 0 5 809 21 0 0 0 chr5 29477165 29477186 -123060073 + AT_rich Low_complexity Low_complexity 1 21 0 5 809 290 254 30 136 chr5 29477186 29477210 -123060049 + MT2B LTR ERVL 161 278 -323 5 809 558 208 0 19 chr5 29477210 29477318 -123059941 + B1_Mur1 SINE Alu 17 122 -27 5 809 559 208 199 19 chr5 29477307 29477582 -123059677 + RMER4B LTR ERVK 217 580 -5 5 809 1004 138 21 0 chr5 29477732 29477877 -123059382 - B1_Mur4 SINE Alu -2 148 1 5 809 1245 240 97 55 chr5 29479154 29479246 -123058013 + Lx6 LINE L1 7019 7099 -361 5 809 212 0 36 0 chr5 29479246 29479274 -123057985 + (TTATA)n Simple_repeat Simple_repeat 1 29 0 5 809 1245 240 97 55 chr5 29479274 29479543 -123057716 + Lx6 LINE L1 7100 7395 -65 5 809 2836 76 0 0 chr5 29479607 29479950 -123057309 + L1_Mus2 LINE L1 6224 6566 0 5 809 10991 122 7 43 chr5 29479985 29482344 -123054915 + L1VL4 LINE L1 584 2810 -3073 5 809 5058 68 0 2 chr5 29482344 29482946 -123054313 + L1_Mus1 LINE L1 5965 6565 -2 5 809 1109 107 0 5 chr5 29482950 29483156 -123054103 + (GAAAA)n Simple_repeat Simple_repeat 1 204 0 5 809 6650 228 58 26 chr5 29483157 29483189 -123054070 + Lx6 LINE L1 5839 5871 -1589 6 809 396 0 0 0 chr5 29483189 29483233 -123054026 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 809 6650 228 58 26 chr5 29483233 29484769 -123052490 + Lx6 LINE L1 5872 7456 -4 6 809 192 179 0 0 chr5 29484771 29484810 -123052449 + A-rich Low_complexity Low_complexity 1 39 0 6 809 29 28 0 0 chr5 29485070 29485106 -123052153 + AT_rich Low_complexity Low_complexity 1 36 0 6 809 186 43 0 0 chr5 29485108 29485131 -123052128 + (GAA)n Simple_repeat Simple_repeat 2 24 0 6 809 656 192 32 26 chr5 29485131 29485286 -123051973 + Lx9 LINE L1 7333 7488 -156 6 809 465 266 68 32 chr5 29485288 29485509 -123051750 + L1MB5 LINE L1 5753 5981 -193 6 809 549 0 0 0 chr5 29485647 29485708 -123051551 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 6 809 74 46 0 0 chr5 29486363 29486472 -123050787 + AT_rich Low_complexity Low_complexity 1 109 0 6 809 180 291 36 18 chr5 29487485 29487541 -123049718 + MIR SINE MIR 98 154 -108 6 809 461 197 555 12 chr5 29487720 29487956 -123049303 + MTD LTR MaLR 1 365 -54 6 809 6437 112 23 37 chr5 29488894 29489763 -123047496 + L1VL2 LINE L1 59 920 -5415 6 809 8368 30 1 0 chr5 29489763 29490683 -123046576 + L1Md_T LINE L1 5662 6582 0 6 809 6437 92 8 6 chr5 29490683 29491168 -123046091 + L1VL2 LINE L1 916 1400 -2215 6 101 5202 69 7 4 chr5 29491146 29491846 -123045413 + L1VL2 LINE L1 1971 2672 -943 6 810 947 230 139 103 chr5 29492124 29492604 -123044655 + MT2B LTR ERVL 1 601 0 6 810 893 137 14 0 chr5 29493048 29493194 -123044065 - URR1A DNA MER1_type 0 226 79 6 810 402 258 48 24 chr5 29494211 29494378 -123042881 + MLT1C LTR MaLR 205 457 -10 6 810 904 179 0 12 chr5 29494487 29495008 -123042251 + (CA)n Simple_repeat Simple_repeat 1 514 0 6 810 228 203 43 72 chr5 29495429 29495498 -123041761 - L1M3 LINE L1 -1837 4303 4237 6 810 275 49 24 0 chr5 29496748 29496789 -123040470 + (CAA)n Simple_repeat Simple_repeat 2 43 0 6 810 183 80 0 0 chr5 29497968 29497993 -123039266 + (A)n Simple_repeat Simple_repeat 1 25 0 6 810 522 0 0 0 chr5 29498567 29498625 -123038634 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 6 810 189 107 0 0 chr5 29498629 29498657 -123038602 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 6 810 564 15 0 0 chr5 29498700 29498765 -123038494 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 6 810 7462 12 0 0 chr5 29498962 29499996 -123037263 - L1Md_A LINE L1 -494 6088 5055 6 810 4849 17 0 0 chr5 29500000 29500542 -123036717 + L1Md_A LINE L1 6041 6582 0 1 810 279 71 0 0 chr5 29500653 29500695 -123036564 + (TTAA)n Simple_repeat Simple_repeat 1 42 0 2 810 406 225 37 94 chr5 29501731 29501922 -123035337 + L1_Mur2 LINE L1 497 676 -6036 3 810 381 133 10 58 chr5 29502199 29502208 -123035051 + (TA)n Simple_repeat Simple_repeat 1 9 0 4 810 1214 50 0 7 chr5 29502208 29502348 -123034911 + B1_Mus1 SINE Alu 1 139 -9 5 810 381 133 10 58 chr5 29502348 29502442 -123034817 + (TA)n Simple_repeat Simple_repeat 1 90 0 6 810 2077 75 85 0 chr5 29502727 29503034 -123034225 - MusHAL1 LINE L1 -1304 1408 1076 7 810 996 141 53 77 chr5 29503032 29503278 -123033981 + L1_Mur2 LINE L1 661 900 -5812 3 810 36234 34 0 0 chr5 29503277 29508916 -123028343 + L1Md_T LINE L1 1 5589 -297 8 810 9584 5 0 0 chr5 29508916 29509912 -123027347 + L1Md_T LINE L1 5590 6585 0 8 810 9995 107 26 9 chr5 29509915 29511483 -123025776 + MusHAL1 LINE L1 42 1636 -1076 9 810 263 359 58 40 chr5 29511530 29511704 -123025555 - Tigger5 DNA MER2_type -2229 177 1 1 810 260 91 0 22 chr5 29512312 29512357 -123024902 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 810 405 0 0 0 chr5 29512357 29512401 -123024858 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 810 225 154 0 0 chr5 29512599 29512638 -123024621 + A-rich Low_complexity Low_complexity 1 39 0 1 810 427 274 164 25 chr5 29512638 29513004 -123024255 + L1ME1 LINE L1 4862 5288 -858 1 810 375 311 79 44 chr5 29513314 29513645 -123023614 + L1ME1 LINE L1 5649 5991 -251 1 810 212 374 82 21 chr5 29515335 29515478 -123021781 - MIRb SINE MIR -4 264 106 1 810 198 0 0 0 chr5 29515478 29515500 -123021759 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 1 810 212 374 82 21 chr5 29515500 29515550 -123021709 - MIRb SINE MIR -163 105 59 1 810 432 268 0 0 chr5 29515586 29515668 -123021591 - ID4_ SINE ID 0 83 2 1 810 831 209 13 7 chr5 29515965 29516114 -123021145 - B1_Mur4 SINE Alu 0 150 1 1 810 523 272 45 45 chr5 29516185 29516339 -123020920 - RSINE1 SINE B4 -7 158 5 1 810 476 240 58 0 chr5 29517835 29517939 -123019320 + RMER15 LTR ERVL 466 575 0 2 810 234 326 21 0 chr5 29518178 29518273 -123018986 + L1MCa LINE L1 882 978 -5067 2 810 1349 90 22 22 chr5 29518817 29518999 -123018260 + B2_Mm2 SINE B2 1 182 -13 2 810 364 131 0 36 chr5 29519030 29519097 -123018162 + B2_Mm2 SINE B2 47 109 -107 2 810 241 282 83 8 chr5 29519128 29519260 -123017999 + L1MCa LINE L1 1230 1371 -5380 2 810 250 219 29 59 chr5 29519391 29519459 -123017800 + PB1D10 SINE Alu 52 117 0 2 810 390 336 187 21 chr5 29519684 29519967 -123017292 + L1MB5 LINE L1 5836 6165 -9 2 810 353 355 28 28 chr5 29519999 29520144 -123017115 + B1F1 SINE Alu 5 149 0 2 810 375 234 0 11 chr5 29520149 29520244 -123017015 + L1MCa LINE L1 1921 2014 -4737 2 810 249 298 12 0 chr5 29520640 29520724 -123016535 - MIRb SINE MIR -40 228 144 2 810 210 71 0 0 chr5 29522487 29522515 -123014744 + (G)n Simple_repeat Simple_repeat 1 28 0 2 810 235 179 0 0 chr5 29523615 29523654 -123013605 - ID4 SINE ID -5 78 40 2 810 231 297 181 38 chr5 29523837 29524047 -123013212 - MIRb SINE MIR -8 260 21 3 810 1842 277 121 157 chr5 29525420 29526827 -123010432 - Tigger7 DNA MER2_type -1127 1364 9 3 810 772 268 59 62 chr5 29527777 29528165 -123009094 - RLTR26 LTR ERVK -225 417 1 3 810 676 261 170 0 chr5 29528182 29528370 -123008889 - B4A SINE B4 -67 225 6 3 810 862 230 112 22 chr5 29530708 29530886 -123006373 + B3 SINE B2 2 195 -21 3 810 180 0 0 0 chr5 29530891 29530911 -123006348 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 3 810 21 0 0 0 chr5 29531115 29531136 -123006123 + AT_rich Low_complexity Low_complexity 1 21 0 3 810 1036 167 23 11 chr5 29531277 29531453 -123005806 + B3 SINE B2 36 213 -3 3 810 811 281 55 10 chr5 29532971 29533172 -123004087 + B3 SINE B2 1 210 -6 3 810 567 273 68 0 chr5 29534189 29534321 -123002938 + ID_B1 SINE B4 1 141 -83 3 810 985 82 0 15 chr5 29534355 29534491 -123002768 - B1_Mm SINE Alu -2 145 12 4 810 442 203 48 129 chr5 29534359 29534506 -123002753 - B4A SINE B4 -71 221 87 4 810 312 212 60 48 chr5 29534471 29534555 -123002704 + ID_B1 SINE B4 138 222 -2 3 810 236 61 55 109 chr5 29534507 29534562 -123002697 + PB1 SINE Alu 76 127 0 4 810 2361 100 30 15 chr5 29535666 29536002 -123001257 + L1_Mus3 LINE L1 6292 6632 -6 4 810 688 257 126 48 chr5 29536091 29536361 -123000898 - B4A SINE B4 -1 291 1 4 810 348 24 0 0 chr5 29537280 29537321 -122999938 + (GAAA)n Simple_repeat Simple_repeat 4 44 0 4 810 688 200 6 6 chr5 29537321 29537441 -122999818 + polypurine Low_complexity Low_complexity 2 122 0 4 810 1124 110 6 12 chr5 29537441 29537764 -122999495 + (GAAA)n Simple_repeat Simple_repeat 1 320 0 4 810 753 140 70 0 chr5 29539955 29540098 -122997161 - Lx LINE L1 -5 6649 6497 4 810 296 192 0 3 chr5 29540900 29540970 -122996289 + B1F1 SINE Alu 50 147 -2 4 810 231 243 40 79 chr5 29542368 29542444 -122994815 - RMER15 LTR ERVL -415 160 88 5 810 289 227 49 25 chr5 29542958 29543080 -122994179 + Lx9 LINE L1 7519 7643 -1 5 810 280 305 93 0 chr5 29544075 29544193 -122993066 + L1MEe LINE L1 556 684 -4170 5 810 574 13 27 0 chr5 29545117 29545192 -122992067 + (TC)n Simple_repeat Simple_repeat 1 77 0 5 810 7820 61 36 0 chr5 29545903 29547162 -122990097 - L1_Mus2 LINE L1 0 6566 5244 5 810 261 0 0 0 chr5 29547162 29547191 -122990068 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 810 4995 87 75 0 chr5 29547191 29547294 -122989965 - L1_Mus2 LINE L1 -640 5243 5131 5 810 493 289 85 8 chr5 29547347 29547476 -122989783 + RSINE1 SINE B4 2 140 -25 5 810 261 214 32 53 chr5 29549068 29549162 -122988097 - Tigger9a DNA Tigger -65 667 576 5 810 514 204 50 10 chr5 29549167 29549266 -122987993 - PB1D10 SINE Alu -9 108 6 5 810 207 0 0 0 chr5 29549730 29549753 -122987506 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 810 331 302 42 96 chr5 29550226 29550485 -122986774 - MER34A LTR ERV1 0 571 284 6 810 774 137 129 8 chr5 29551209 29551341 -122985918 - B1_Mur3 SINE Alu 0 149 2 6 810 185 326 0 0 chr5 29552417 29552466 -122984793 + MIRb SINE MIR 220 268 0 6 810 1156 121 11 23 chr5 29554969 29555146 -122982113 + B2_Mm2 SINE B2 2 176 -19 6 810 1294 41 0 13 chr5 29555227 29555376 -122981883 - B1_Mus1 SINE Alu 0 148 2 6 810 4010 46 43 66 chr5 29555668 29556199 -122981060 + MURVY-LTR LTR ERV1 1 519 0 6 810 352 37 37 0 chr5 29556836 29556890 -122980369 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 6 810 957 204 82 25 chr5 29557007 29557203 -122980056 - B3 SINE B2 -7 209 3 6 810 685 218 42 7 chr5 29557249 29557392 -122979867 - B1_Mur1 SINE Alu -1 148 1 6 810 21 0 0 0 chr5 29558641 29558662 -122978597 + AT_rich Low_complexity Low_complexity 1 21 0 6 810 395 289 0 0 chr5 29559788 29559864 -122977395 - ID4 SINE ID -6 77 2 7 810 571 39 52 0 chr5 29562424 29562501 -122974758 - MTB LTR MaLR 0 396 316 7 810 449 0 0 0 chr5 29562485 29562540 -122974719 + MTA_Mm-int LTR MaLR 1044 1098 0 7 810 3367 41 5 55 chr5 29562540 29562957 -122974302 + MTA_Mm LTR MaLR 1 396 0 7 810 2491 53 8 63 chr5 29562959 29563321 -122973938 - MTB LTR MaLR -58 342 1 7 810 40 37 0 0 chr5 29565316 29565370 -122971889 + AT_rich Low_complexity Low_complexity 1 54 0 7 810 482 243 32 65 chr5 29565837 29565991 -122971268 + B4 SINE B4 144 292 0 7 810 213 207 24 12 chr5 29566009 29566092 -122971167 + (CA)n Simple_repeat Simple_repeat 1 84 0 7 810 263 238 113 50 chr5 29566326 29566485 -122970774 + L1MEg LINE L1 1470 1638 -4604 7 810 548 276 126 0 chr5 29566489 29566735 -122970524 + L1_Mur3 LINE L1 4730 5006 -1137 7 810 9985 67 14 12 chr5 29566738 29568977 -122968282 + Lx3A LINE L1 4734 6979 -2 7 810 420 181 14 0 chr5 29569119 29569210 -122968049 - Lx3B LINE L1 -191 6782 6687 7 810 313 229 50 25 chr5 29569207 29569328 -122967931 + L1_Mus3 LINE L1 6515 6638 0 8 810 784 244 79 61 chr5 29569341 29569938 -122967321 + L1_Mur3 LINE L1 5017 5658 -639 7 810 189 0 0 0 chr5 29570588 29570609 -122966650 + (T)n Simple_repeat Simple_repeat 1 21 0 8 810 462 315 86 45 chr5 29571022 29571584 -122965675 + L1MEg LINE L1 3454 4027 -2119 7 810 298 289 0 50 chr5 29571618 29571698 -122965561 + ID4 SINE ID 6 81 -2 8 810 198 71 0 0 chr5 29571700 29571728 -122965531 + (G)n Simple_repeat Simple_repeat 1 28 0 8 810 759 252 238 11 chr5 29572262 29572632 -122964627 - L1MB2 LINE L1 -2 6169 5716 8 810 402 165 0 12 chr5 29572868 29572954 -122964305 + Lx2B LINE L1 6916 7000 0 8 810 1829 259 119 13 chr5 29574083 29575015 -122962244 + Lx8 LINE L1 6405 7470 -3 8 810 6609 70 1 14 chr5 29575032 29575870 -122961389 - L1Md_F3 LINE L1 -13 6571 5745 8 810 1278 40 0 20 chr5 29576287 29576438 -122960821 + B1_Mus1 SINE Alu 1 148 0 8 810 25 51 0 0 chr5 29579155 29579194 -122958065 + AT_rich Low_complexity Low_complexity 1 39 0 8 810 1277 41 7 0 chr5 29579915 29580061 -122957198 + B1_Mus1 SINE Alu 2 148 0 9 810 2707 187 79 89 chr5 29581392 29582051 -122955208 - RMER1B Other Other 0 1066 415 9 810 27 29 0 0 chr5 29582076 29582110 -122955149 + AT_rich Low_complexity Low_complexity 1 34 0 9 810 22 35 0 0 chr5 29582243 29582272 -122954987 + AT_rich Low_complexity Low_complexity 1 29 0 9 810 297 210 134 63 chr5 29582835 29582962 -122954297 + MER34A1 LTR ERV1 436 587 0 9 810 613 232 8 0 chr5 29583475 29583600 -122953659 + ID_B1 SINE B4 91 216 -8 9 810 345 254 0 0 chr5 29583708 29583771 -122953488 + B1F1 SINE Alu 1 63 -86 9 810 328 301 53 21 chr5 29583895 29583990 -122953269 - PB1D10 SINE Alu -7 110 13 9 810 207 188 0 0 chr5 29584293 29584341 -122952918 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 810 348 193 18 9 chr5 29584342 29584452 -122952807 + (TA)n Simple_repeat Simple_repeat 1 111 0 9 810 558 260 98 16 chr5 29586028 29586212 -122951047 + B3 SINE B2 1 199 -17 1 810 253 354 30 0 chr5 29586320 29586419 -122950840 + L1MEg LINE L1 108 209 -5875 1 810 374 301 174 10 chr5 29586879 29587074 -122950185 + L1MEg LINE L1 892 1118 -4966 1 810 232 306 115 42 chr5 29587152 29587343 -122949916 + L1MEc LINE L1 123 327 -6073 1 810 235 200 126 0 chr5 29587658 29587753 -122949506 + L1MEc LINE L1 822 928 -5472 1 810 1321 227 19 4 chr5 29587780 29588045 -122949214 - MTD LTR MaLR 0 419 151 1 810 1130 156 119 10 chr5 29588056 29588257 -122949002 + URR1B DNA MER1_type 3 225 0 1 810 228 128 26 0 chr5 29588257 29588296 -122948963 - MTD LTR MaLR -379 40 1 1 810 743 301 63 99 chr5 29588305 29588607 -122948652 + B4A SINE B4 2 292 0 1 810 279 203 118 15 chr5 29588711 29588846 -122948413 + L1MEc LINE L1 1047 1195 -5205 1 810 335 297 103 9 chr5 29588865 29589079 -122948180 + L1MEc LINE L1 1240 1473 -4927 1 810 1227 74 51 31 chr5 29589098 29589294 -122947965 + L1_Mus4 LINE L1 6437 6636 0 1 810 535 295 25 37 chr5 29589357 29589519 -122947740 + RSINE1 SINE B4 2 161 -4 1 810 548 239 47 11 chr5 29589593 29589766 -122947493 + B3A SINE B2 2 184 -11 1 810 1022 190 130 0 chr5 29590160 29590360 -122946899 + URR1A DNA MER1_type 1 226 0 1 810 6553 74 32 16 chr5 29591434 29593034 -122944225 + L1VL4 LINE L1 50 1668 -1891 1 810 1384 47 0 12 chr5 29593034 29593206 -122944053 - L1Md_A LINE L1 0 6582 6413 1 810 7428 49 0 0 chr5 29593215 29594100 -122943159 + L1Md_T LINE L1 5587 6471 -111 1 810 9080 65 30 2 chr5 29594097 29595352 -122941907 + L1VL4 LINE L1 1655 2944 -615 1 810 231 300 113 73 chr5 29595888 29595999 -122941260 - ORR1D2 LTR MaLR -172 198 82 1 810 1456 159 18 5 chr5 29595999 29596220 -122941039 + URR1B DNA MER1_type 2 225 0 1 810 231 300 113 73 chr5 29596220 29596259 -122941000 - ORR1D2 LTR MaLR -289 81 42 1 810 437 305 126 5 chr5 29597060 29597274 -122939985 - HAL1 LINE L1 -2017 490 251 1 810 291 271 105 79 chr5 29597428 29597580 -122939679 - MLT1D LTR MaLR 0 610 455 1 810 512 209 23 69 chr5 29598033 29598208 -122939051 - Lx7 LINE L1 0 7696 7530 1 810 4139 204 58 70 chr5 29598181 29599188 -122938071 - Lx7 LINE L1 -276 7420 6426 1 810 310 331 108 57 chr5 29599574 29599750 -122937509 - MLT1D LTR MaLR -63 404 220 1 810 319 164 13 107 chr5 29599823 29599898 -122937361 - MLT1D LTR MaLR -414 91 24 1 810 3533 65 26 30 chr5 29600357 29600820 -122936439 - L1_Mus1 LINE L1 -1 6566 6106 1 810 4563 55 0 0 chr5 29600820 29601367 -122935892 + L1_Mm LINE L1 5336 5882 -1 1 810 302 306 81 0 chr5 29601562 29601686 -122935573 - L4 LINE RTE -120 1909 1776 1 810 1046 186 92 10 chr5 29602012 29602208 -122935051 - B3 SINE B2 -3 213 2 1 810 223 167 0 0 chr5 29603609 29603651 -122933608 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 810 302 0 0 26 chr5 29604362 29604401 -122932858 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 810 406 173 24 47 chr5 29604906 29604991 -122932268 + ID4_ SINE ID 1 83 0 1 810 1536 312 81 45 chr5 29605914 29606273 -122930986 - Lx8 LINE L1 -889 6584 6198 1 810 1846 73 12 4 chr5 29606273 29606519 -122930740 - L1_Mus3 LINE L1 -4 6634 6387 1 810 1536 286 69 24 chr5 29606519 29607241 -122930018 - Lx8 LINE L1 -1276 6197 5464 1 810 21 36 0 0 chr5 29607647 29607675 -122929584 + AT_rich Low_complexity Low_complexity 1 28 0 1 810 251 288 101 73 chr5 29607721 29607968 -122929291 - L2 LINE L2 -1695 1724 1471 1 810 4865 167 115 59 chr5 29607992 29608442 -122928817 - L1_Rod LINE L1 -188 5659 5204 1 810 615 117 0 0 chr5 29608442 29608536 -122928723 + (TA)n Simple_repeat Simple_repeat 2 95 0 1 810 4865 167 115 59 chr5 29608536 29609336 -122927923 - L1_Rod LINE L1 -644 5203 4339 1 810 1190 169 4 78 chr5 29609336 29609580 -122927679 + ORR1C2 LTR MaLR 1 226 -158 1 810 1239 139 204 26 chr5 29609597 29609632 -122927627 + Lx9 LINE L1 7298 7333 -311 1 810 4217 149 45 14 chr5 29609632 29610365 -122926894 - RMER6A LTR ERVK 0 756 1 1 810 1239 139 204 26 chr5 29610365 29610594 -122926665 + Lx9 LINE L1 7334 7609 -35 1 810 360 0 0 0 chr5 29610606 29610646 -122926613 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 810 415 160 21 0 chr5 29611778 29611872 -122925387 + CT-rich Low_complexity Low_complexity 1 96 0 1 810 758 89 0 9 chr5 29611872 29611985 -122925274 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 1 810 3280 33 13 0 chr5 29612648 29613039 -122924220 - MTA_Mm LTR MaLR 0 396 1 1 810 948 216 74 0 chr5 29613129 29613319 -122923940 + B3 SINE B2 10 213 -3 1 810 32 86 0 0 chr5 29614120 29614201 -122923058 + AT_rich Low_complexity Low_complexity 1 81 0 1 810 1129 62 7 0 chr5 29614465 29614610 -122922649 + B1_Mus2 SINE Alu 2 147 0 1 810 216 0 0 0 chr5 29614610 29614634 -122922625 + (A)n Simple_repeat Simple_repeat 1 24 0 1 810 408 252 29 24 chr5 29614646 29614766 -122922493 + B3 SINE B2 1 118 -80 1 810 262 293 13 39 chr5 29614745 29614823 -122922436 + B1_Mur3 SINE Alu 74 149 0 1 810 201 313 24 24 chr5 29615811 29615896 -122921363 - L3 LINE CR1 -3560 929 845 1 810 200 282 147 51 chr5 29616225 29616382 -122920877 + MIR SINE MIR 46 217 -45 1 810 221 299 83 18 chr5 29617390 29617499 -122919760 - PB1D10 SINE Alu -1 116 1 1 810 24 67 0 0 chr5 29617665 29617710 -122919549 + AT_rich Low_complexity Low_complexity 1 45 0 1 810 207 100 0 0 chr5 29618455 29618485 -122918774 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 810 793 182 0 33 chr5 29619143 29619296 -122917963 + B1_Mur3 SINE Alu 2 149 0 1 810 23 33 0 0 chr5 29619688 29619718 -122917541 + AT_rich Low_complexity Low_complexity 1 30 0 1 810 216 0 0 0 chr5 29620017 29620041 -122917218 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 810 984 121 0 0 chr5 29620333 29620474 -122916785 + B1_Mus1 SINE Alu 3 143 -5 1 810 223 49 49 0 chr5 29620484 29620525 -122916734 + (CAAAAA)n Simple_repeat Simple_repeat 4 46 0 1 810 403 315 6 89 chr5 29620836 29620993 -122916266 + B1F SINE Alu 1 144 -5 1 810 3029 91 89 8 chr5 29621002 29621580 -122915679 + MusHAL1 LINE L1 200 822 -2531 1 810 1726 95 37 0 chr5 29621575 29621869 -122915390 + MusHAL1 LINE L1 1293 1597 -1756 1 101 3309 67 2 0 chr5 29621864 29622311 -122914948 - L1Md_F2 LINE L1 -357 5526 5079 1 811 534 45 0 0 chr5 29622309 29622375 -122914884 + L1Md_F2 LINE L1 5521 5586 -297 1 811 7836 45 10 3 chr5 29622375 29623345 -122913914 + L1Md_F2 LINE L1 5587 6563 -19 1 811 19578 141 24 11 chr5 29623363 29627101 -122910158 + Lx2 LINE L1 2146 5927 -1070 1 811 275 131 0 8 chr5 29627402 29627456 -122909803 - L1Md_Gf LINE L1 -6278 244 199 1 811 3237 246 113 18 chr5 29628147 29629409 -122907850 + L1_Mur3 LINE L1 3296 4677 -1203 1 811 503 64 0 0 chr5 29629411 29629489 -122907770 + L1_Mus2 LINE L1 6495 6636 0 1 811 279 0 0 0 chr5 29629513 29629544 -122907715 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 811 571 281 218 12 chr5 29629562 29630072 -122907187 + L1_Mur3 LINE L1 4723 5275 -605 1 811 2038 132 3 12 chr5 29630074 29630403 -122906856 + MurERV4_19-int LTR ERVK 608 933 -4847 1 811 1100 126 27 51 chr5 29630403 29630653 -122906606 - ORR1A4 LTR MaLR -79 250 1 1 811 9289 142 18 169 chr5 29630657 29631671 -122905588 - ORR1A4-int LTR MaLR -4 1959 1043 1 811 1213 28 21 0 chr5 29631671 29631815 -122905444 - B1_Mus1 SINE Alu 0 148 2 1 811 9289 142 18 169 chr5 29631815 29632592 -122904667 - ORR1A4-int LTR MaLR -921 1042 381 1 811 6644 43 0 0 chr5 29632592 29633389 -122903870 + L1Md_T LINE L1 5786 6582 0 1 811 9289 142 18 169 chr5 29633389 29633902 -122903357 - ORR1A4-int LTR MaLR -1583 380 1 1 811 2009 141 6 33 chr5 29633906 29634236 -122903023 - ORR1A4 LTR MaLR -8 321 1 1 811 960 146 73 0 chr5 29634236 29634398 -122902861 - MTC LTR MaLR -214 207 34 1 811 1112 156 28 135 chr5 29634399 29634527 -122902732 - URR1B DNA MER1_type 0 225 99 1 811 2251 59 0 7 chr5 29634527 29634818 -122902441 + L1Md_F2 LINE L1 6282 6570 -12 1 811 1075 163 11 74 chr5 29634821 29635092 -122902167 + Lx9 LINE L1 7389 7642 -2 1 811 1112 156 28 135 chr5 29635092 29635211 -122902048 - URR1B DNA MER1_type -127 98 1 1 811 387 314 48 8 chr5 29635410 29635535 -122901724 - MTEb LTR MaLR -249 130 1 1 811 412 297 34 35 chr5 29635543 29635790 -122901469 - L1_Rod LINE L1 -635 5656 5353 1 811 822 149 11 111 chr5 29635862 29636043 -122901216 - ORR1C1 LTR MaLR -215 163 1 1 811 229 270 68 0 chr5 29636169 29636227 -122901032 + PB1D10 SINE Alu 12 75 -74 1 811 432 0 0 0 chr5 29636702 29636750 -122900509 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 811 236 30 30 0 chr5 29636941 29636974 -122900285 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1 811 517 296 63 29 chr5 29638320 29638494 -122898765 + B3A SINE B2 19 198 0 1 811 266 314 15 76 chr5 29638778 29638836 -122898423 + ID_B1 SINE B4 30 152 -72 1 811 391 219 0 0 chr5 29638836 29638909 -122898350 + B1_Mur3 SINE Alu 2 74 -75 1 811 431 216 76 29 chr5 29638902 29639007 -122898252 + B3 SINE B2 107 216 0 1 811 1257 102 5 26 chr5 29639162 29639353 -122897906 + B2_Mm1t SINE B2 1 187 -6 1 811 239 278 124 0 chr5 29640421 29640518 -122896741 - B1F SINE Alu -40 109 1 1 811 533 248 105 0 chr5 29644056 29644189 -122893070 - RSINE1 SINE B4 -17 148 2 1 811 188 304 18 0 chr5 29644337 29644393 -122892866 - MIRc SINE MIR -47 221 165 1 811 7076 100 37 6 chr5 29644879 29645715 -122891544 + L1_Mus4 LINE L1 5164 6021 -615 1 811 3345 30 2 12 chr5 29645715 29646115 -122891144 - MTA_Mm LTR MaLR 0 396 1 1 811 7076 67 42 12 chr5 29646115 29646697 -122890562 + L1_Mus4 LINE L1 6022 6620 -16 1 811 3019 23 0 11 chr5 29646697 29647047 -122890212 + ORR1A0 LTR MaLR 1 346 0 1 811 7076 67 42 12 chr5 29647047 29647067 -122890192 + L1_Mus4 LINE L1 6621 6635 -1 1 811 1415 152 5 0 chr5 29647196 29647419 -122889840 + URR1B DNA MER1_type 2 225 0 1 811 835 171 0 33 chr5 29648798 29648949 -122888310 - B1_Mus2 SINE Alu -1 146 1 1 811 336 200 106 0 chr5 29649242 29649327 -122887932 + U6 snRNA snRNA 1 94 -13 1 811 1085 303 19 8 chr5 29649328 29649584 -122887675 + B4A SINE B4 22 280 -12 1 811 60 59 0 0 chr5 29650607 29650709 -122886550 + AT_rich Low_complexity Low_complexity 1 102 0 1 811 188 269 56 69 chr5 29650930 29651002 -122886257 - MIR SINE MIR -6 256 186 1 811 824 52 0 42 chr5 29651305 29651425 -122885834 + B1_Mus1 SINE Alu 5 119 -29 1 811 287 371 16 16 chr5 29651602 29651791 -122885468 + RMER15 LTR ERVL 255 443 -132 1 811 242 128 0 41 chr5 29651799 29651848 -122885411 + A-rich Low_complexity Low_complexity 2 48 0 1 811 1025 223 13 22 chr5 29652294 29652519 -122884740 - ID_B1 SINE B4 -1 223 1 1 811 21 0 0 0 chr5 29652565 29652586 -122884673 + AT_rich Low_complexity Low_complexity 1 21 0 1 811 3262 41 5 10 chr5 29653497 29653895 -122883364 + MTA_Mm LTR MaLR 1 396 0 1 811 1142 189 0 20 chr5 29654170 29654365 -122882894 + B3 SINE B2 2 192 -24 1 811 22 56 0 0 chr5 29654365 29654401 -122882858 + AT_rich Low_complexity Low_complexity 1 36 0 2 811 230 299 30 0 chr5 29654559 29654626 -122882633 - RSINE1 SINE B4 -12 153 85 2 811 1118 102 67 6 chr5 29654634 29654812 -122882447 - B2_Mm1t SINE B2 -3 190 2 2 811 791 114 133 30 chr5 29655211 29655346 -122881913 + B1_Mur4 SINE Alu 1 149 -1 2 811 1065 45 0 0 chr5 29655611 29655745 -122881514 - ORR1A1 LTR MaLR 0 346 213 2 811 12302 53 7 3 chr5 29655717 29657354 -122879905 - ORR1A1-int LTR MaLR -178 1614 1 2 811 2902 41 3 0 chr5 29657354 29657699 -122879560 - ORR1A1 LTR MaLR 0 346 1 2 811 376 291 70 10 chr5 29657947 29658148 -122879111 - L1M5 LINE L1 -432 5747 5535 2 811 656 312 78 41 chr5 29658151 29658775 -122878484 - L1M5 LINE L1 -865 5281 4612 2 811 1121 112 39 22 chr5 29658775 29658957 -122878302 + B2_Mm2 SINE B2 1 185 -10 2 811 656 310 76 43 chr5 29658957 29659033 -122878226 - L1M5 LINE L1 -1532 4614 4541 2 811 473 59 0 0 chr5 29659040 29659108 -122878151 + L1_Mus2 LINE L1 6499 6566 0 2 811 228 355 0 0 chr5 29659134 29659196 -122878063 + MLT1A LTR MaLR 31 92 -282 2 811 1068 256 51 55 chr5 29659939 29660232 -122877027 + B4 SINE B4 1 292 0 2 811 1014 103 55 1 chr5 29660574 29660722 -122876537 + B2_Mm2 SINE B2 4 163 -53 2 811 189 0 0 0 chr5 29660722 29660743 -122876516 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2 811 575 218 129 73 chr5 29660743 29660772 -122876487 + B3 SINE B2 164 191 -25 2 811 688 305 141 8 chr5 29660922 29661163 -122876096 + B4A SINE B4 2 274 -18 2 811 199 79 26 26 chr5 29661187 29661226 -122876033 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 811 215 0 67 0 chr5 29661673 29661703 -122875556 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2 811 1013 89 0 7 chr5 29661705 29661841 -122875418 - B1_Mus1 SINE Alu -13 135 1 2 811 387 0 0 0 chr5 29661976 29662019 -122875240 + (TTA)n Simple_repeat Simple_repeat 1 43 0 2 811 445 299 94 0 chr5 29662047 29662124 -122875135 + B4A SINE B4 2 90 -202 2 811 251 188 129 14 chr5 29662124 29662194 -122875065 + B1_Mus1 SINE Alu 4 81 -67 2 811 188 0 67 67 chr5 29662672 29662717 -122874542 + (CAAAAA)n Simple_repeat Simple_repeat 6 50 0 2 811 1545 31 5 10 chr5 29663240 29663438 -122873821 - MTA_Mm LTR MaLR -199 197 1 2 811 308 143 18 0 chr5 29663516 29663572 -122873687 + ERVL-B4-int LTR ERVL 3263 3319 -2395 2 811 357 238 53 38 chr5 29663625 29663756 -122873503 + ERVL-B4-int LTR ERVL 3410 3542 -2172 2 811 1695 26 0 0 chr5 29663847 29664039 -122873220 + B2_Mm1t SINE B2 2 193 0 2 811 255 331 78 18 chr5 29664231 29664397 -122872862 - MIRb SINE MIR -58 210 35 2 811 1214 61 0 0 chr5 29664595 29664742 -122872517 + B1_Mm SINE Alu 1 147 0 2 811 728 73 12 62 chr5 29665943 29666103 -122871156 + (TCC)n Simple_repeat Simple_repeat 3 154 0 2 811 475 170 54 45 chr5 29666114 29666125 -122871134 - PB1D9 SINE Alu 0 120 113 2 811 686 45 0 11 chr5 29666125 29666216 -122871043 + (GTGTG)n Simple_repeat Simple_repeat 4 93 0 2 811 475 170 54 45 chr5 29666216 29666315 -122870944 - PB1D9 SINE Alu -8 112 9 2 811 18096 122 26 22 chr5 29666470 29669534 -122867725 - Lx5 LINE L1 -878 4999 1909 2 811 7208 171 35 12 chr5 29669536 29671472 -122865787 + Lx5 LINE L1 5020 7012 -38 2 811 28 29 0 0 chr5 29671475 29671510 -122865749 + AT_rich Low_complexity Low_complexity 1 35 0 2 811 22 35 0 0 chr5 29671690 29671719 -122865540 + AT_rich Low_complexity Low_complexity 1 29 0 2 811 437 274 25 41 chr5 29672168 29672290 -122864969 - PB1D9 SINE Alu 0 120 1 2 811 460 250 96 8 chr5 29672490 29672615 -122864644 + B1F SINE Alu 3 138 -11 2 811 228 35 0 0 chr5 29672642 29672671 -122864588 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 811 1863 205 59 25 chr5 29672783 29673188 -122864071 + MTD LTR MaLR 1 419 0 2 811 390 284 10 169 chr5 29673686 29673881 -122863378 - RSINE1 SINE B4 0 165 2 2 811 237 33 0 0 chr5 29674091 29674121 -122863138 + (A)n Simple_repeat Simple_repeat 1 30 0 2 811 402 179 24 12 chr5 29674302 29674387 -122862872 + B1_Mur1 SINE Alu 43 128 -21 2 811 398 263 30 15 chr5 29674388 29674523 -122862736 + GA-rich Low_complexity Low_complexity 5 141 0 2 811 38779 46 3 13 chr5 29676060 29683217 -122854042 - L1Md_T LINE L1 0 6585 1 2 811 238 385 39 0 chr5 29683235 29683365 -122853894 + ORR1E LTR MaLR 1 135 -224 2 811 396 264 169 8 chr5 29684356 29684593 -122852666 - L1MC4 LINE L1 -953 7089 6815 2 811 1483 128 4 62 chr5 29684593 29684793 -122852466 + ORR1A3 LTR MaLR 68 255 -71 2 811 1539 101 9 22 chr5 29684793 29685025 -122852234 + Lx2 LINE L1 6769 6997 0 2 811 1483 128 4 62 chr5 29685025 29685099 -122852160 + ORR1A3 LTR MaLR 256 326 0 2 811 1036 117 12 0 chr5 29685099 29685262 -122851997 + ORR1A3-int LTR MaLR 1 165 -1798 2 811 1049 117 0 12 chr5 29685253 29685417 -122851842 - ORR1A3 LTR MaLR -160 166 5 2 811 285 29 0 0 chr5 29685538 29685572 -122851687 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2 811 647 211 8 0 chr5 29685828 29685951 -122851308 - B3 SINE B2 -92 124 1 2 811 3395 73 23 0 chr5 29685969 29686406 -122850853 + LTRIS5 LTR ERV1 1 447 0 2 811 2967 74 35 2 chr5 29686599 29686993 -122850266 - MTB_Mm LTR MaLR 0 407 1 2 811 257 242 124 21 chr5 29687016 29687113 -122850146 - PB1 SINE Alu -15 112 6 2 811 285 197 30 0 chr5 29687377 29687443 -122849816 + RLTR25B LTR ERVK 421 488 -540 2 811 480 114 25 0 chr5 29687397 29687476 -122849783 + PB1D9 SINE Alu 40 120 0 2 811 2177 77 86 3 chr5 29688099 29688401 -122848858 + ORR1A2 LTR MaLR 1 327 0 2 811 1209 55 0 0 chr5 29689444 29689590 -122847669 + B1_Mus2 SINE Alu 2 147 0 2 811 1134 188 39 5 chr5 29689708 29689916 -122847343 + B3 SINE B2 1 215 -1 2 811 582 157 0 0 chr5 29689956 29690058 -122847201 + GA-rich Low_complexity Low_complexity 2 103 0 2 811 737 280 178 14 chr5 29691336 29691854 -122845405 - L1MA9 LINE L1 -408 5904 5302 2 811 978 128 7 20 chr5 29692224 29692376 -122844883 + B1_Mur4 SINE Alu 1 150 0 2 811 202 266 49 25 chr5 29692605 29692686 -122844573 - L2a LINE L2 -1 3425 3343 2 811 519 328 218 27 chr5 29692918 29693106 -122844153 - L2a LINE L2 -449 2970 2763 2 811 387 60 0 0 chr5 29693106 29693156 -122844103 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 811 180 77 0 0 chr5 29693160 29693186 -122844073 + (TATG)n Simple_repeat Simple_repeat 3 28 0 2 811 519 328 218 27 chr5 29693186 29693874 -122843385 - L2a LINE L2 -657 2762 1925 2 811 279 330 26 9 chr5 29694150 29694266 -122842993 - L2 LINE L2 -1381 2038 1921 2 811 1368 202 56 104 chr5 29694479 29694549 -122842710 - ORR1D1 LTR MaLR 0 374 306 2 811 1261 41 0 0 chr5 29694549 29694694 -122842565 + B1_Mm SINE Alu 1 145 -2 2 811 215 0 67 0 chr5 29694694 29694724 -122842535 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2 811 1368 202 56 104 chr5 29694724 29695045 -122842214 - ORR1D1 LTR MaLR -69 305 2 2 811 409 216 0 0 chr5 29695045 29695142 -122842117 + Lx9 LINE L1 7521 7617 -27 2 811 1787 254 101 56 chr5 29695131 29695367 -122841892 + L1MA5 LINE L1 4386 4637 -1506 2 811 3465 28 5 0 chr5 29695367 29695761 -122841498 + MTA_Mm LTR MaLR 1 396 0 2 811 7958 65 35 4 chr5 29695761 29696825 -122840434 + MTA_Mm-int LTR MaLR 1 1097 -1 2 811 3543 23 2 0 chr5 29696826 29697221 -122840038 + MTA_Mm LTR MaLR 1 396 0 2 811 1787 267 107 55 chr5 29697221 29698141 -122839118 + L1MA5 LINE L1 4609 5613 -273 2 811 2021 211 54 36 chr5 29698207 29698728 -122838531 + RLTR20A2 LTR ERVK 49 578 0 2 811 332 272 43 0 chr5 29698733 29698825 -122838434 + L1MA5 LINE L1 5747 5842 -458 2 811 346 283 105 32 chr5 29698958 29699082 -122838177 + ID_B1 SINE B4 91 223 -1 2 811 28 0 0 0 chr5 29699190 29699218 -122838041 + AT_rich Low_complexity Low_complexity 1 28 0 2 811 228 205 81 46 chr5 29699348 29699435 -122837824 + L1MC LINE L1 3961 4050 -2096 2 811 1065 113 6 0 chr5 29699439 29699598 -122837661 + B2_Mm1t SINE B2 1 160 -33 2 811 215 103 0 79 chr5 29699599 29699662 -122837597 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 2 811 717 31 0 65 chr5 29699766 29699904 -122837355 + (GAAA)n Simple_repeat Simple_repeat 4 132 0 2 811 832 255 99 10 chr5 29699905 29700198 -122837061 + L1MC LINE L1 4044 4362 -1784 2 811 535 268 0 55 chr5 29700252 29700398 -122836861 - B1_Mur1 SINE Alu -2 147 10 2 811 3694 204 67 18 chr5 29700400 29701159 -122836100 + Lx5 LINE L1 6249 7044 -6 2 811 1532 230 94 25 chr5 29701176 29701580 -122835679 + L1MC LINE L1 4338 4769 -1377 2 811 1235 54 0 0 chr5 29701580 29701728 -122835531 + B1_Mus1 SINE Alu 1 148 0 2 811 1532 230 94 25 chr5 29701728 29701884 -122835375 + L1MC LINE L1 4770 4937 -1209 2 811 800 209 11 40 chr5 29702175 29702349 -122834910 + B3 SINE B2 48 216 0 2 811 2201 268 87 49 chr5 29702541 29703378 -122833881 + Lx8 LINE L1 6605 7473 0 2 811 443 235 17 0 chr5 29705682 29705797 -122831462 - PB1D9 SINE Alu -1 119 3 2 811 1751 172 118 83 chr5 29706316 29706394 -122830865 - RLTR41 LTR ERV1 0 446 374 2 811 1166 56 7 0 chr5 29706394 29706538 -122830721 - B1_Mus2 SINE Alu -1 146 2 2 811 1751 172 118 83 chr5 29706538 29706890 -122830369 - RLTR41 LTR ERV1 -73 373 2 2 811 3740 168 106 113 chr5 29707260 29707473 -122829786 - RLTR25B LTR ERVK 0 1028 852 2 811 306 0 0 0 chr5 29707473 29707507 -122829752 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 811 3740 168 106 113 chr5 29707507 29708328 -122828931 - RLTR25B LTR ERVK -177 851 1 2 811 539 288 82 7 chr5 29708502 29708649 -122828610 + RSINE1 SINE B4 4 161 -4 2 811 342 0 0 0 chr5 29709027 29709065 -122828194 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 811 1518 129 52 30 chr5 29709276 29709547 -122827712 - ORR1B2 LTR MaLR -8 359 83 2 811 813 211 113 110 chr5 29709763 29710126 -122827133 - MT2A LTR ERVL -167 366 3 2 811 243 240 108 45 chr5 29710165 29710322 -122826937 + L1ME3B LINE L1 5862 6028 -212 2 811 3834 176 63 72 chr5 29710493 29710525 -122826734 - Lx7 LINE L1 0 7696 7669 2 811 4240 152 73 85 chr5 29710525 29711438 -122825821 - RMER19B LTR ERVK 0 902 1 2 811 3834 176 63 72 chr5 29711438 29712288 -122824971 - Lx7 LINE L1 -28 7668 6822 2 811 1117 95 0 0 chr5 29712468 29712616 -122824643 + B1_Mus1 SINE Alu 1 148 0 2 811 880 154 0 0 chr5 29712706 29712855 -122824404 + ORR1A2 LTR MaLR 1 149 -178 2 811 229 307 33 33 chr5 29712963 29713054 -122824205 + PB1D10 SINE Alu 7 97 -20 2 811 1119 70 7 0 chr5 29713252 29713394 -122823865 - B1_Mus1 SINE Alu -5 143 1 2 811 275 229 54 99 chr5 29713479 29713591 -122823668 + B1_Mur1 SINE Alu 10 149 0 2 811 828 80 0 0 chr5 29714507 29714620 -122822639 + (TCC)n Simple_repeat Simple_repeat 3 115 0 2 811 223 362 137 6 chr5 29716534 29716695 -122820564 - MIRc SINE MIR -20 248 67 2 811 372 276 171 6 chr5 29716838 29717002 -122820257 + B3 SINE B2 17 207 -9 2 811 240 155 28 14 chr5 29717061 29717133 -122820126 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 811 562 197 7 17 chr5 29717500 29717636 -122819623 - B1_Mur1 SINE Alu 0 149 20 3 811 2439 97 9 0 chr5 29717697 29718046 -122819213 - L1_Mus4 LINE L1 -10 6626 6275 3 811 351 217 148 57 chr5 29719092 29719214 -122818045 - ID_B1 SINE B4 0 224 92 3 811 306 164 0 0 chr5 29719255 29719310 -122817949 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 811 1082 188 34 0 chr5 29719331 29719539 -122817720 + B3 SINE B2 2 216 0 3 811 21 0 0 0 chr5 29719549 29719570 -122817689 + AT_rich Low_complexity Low_complexity 1 21 0 3 811 3642 251 61 8 chr5 29719581 29720483 -122816776 - Lx8 LINE L1 -10 7463 6514 3 811 284 246 62 78 chr5 29720484 29720504 -122816755 + ID_B1 SINE B4 97 217 -2 3 811 612 155 19 0 chr5 29720504 29720607 -122816652 + B1_Mur3 SINE Alu 38 142 -7 3 811 21 0 0 0 chr5 29720979 29721000 -122816259 + AT_rich Low_complexity Low_complexity 1 21 0 3 811 358 193 121 0 chr5 29721603 29721686 -122815573 + L1MDa LINE L1 1045 1137 -5403 3 811 368 265 244 43 chr5 29721862 29722277 -122814982 + L1MDa LINE L1 1212 1719 -4914 3 811 3867 16 0 0 chr5 29722475 29722910 -122814349 + L1Md_T LINE L1 5152 5586 -297 3 811 8598 29 0 0 chr5 29722910 29723894 -122813365 + L1Md_T LINE L1 5587 6570 -12 3 811 405 0 0 0 chr5 29724075 29724120 -122813139 + (A)n Simple_repeat Simple_repeat 1 45 0 3 811 1046 241 121 36 chr5 29724120 29724508 -122812751 + Lx8 LINE L1 7041 7461 -12 3 811 359 262 9 27 chr5 29724553 29724663 -122812596 + PB1D7 SINE Alu 13 120 0 3 811 315 150 48 0 chr5 29724715 29724784 -122812475 + B1F SINE Alu 32 142 -7 3 811 910 114 35 14 chr5 29724860 29725002 -122812257 + B1_Mus1 SINE Alu 3 147 -1 3 811 916 215 6 6 chr5 29726644 29726822 -122810437 + B3 SINE B2 1 178 -38 3 811 500 257 9 0 chr5 29726803 29726908 -122810351 + ID_B1 SINE B4 90 195 -29 3 811 276 321 25 59 chr5 29726908 29726922 -122810337 + PB1 SINE Alu 9 123 -4 3 811 2633 36 3 0 chr5 29727118 29727455 -122809804 + ORR1A1 LTR MaLR 1 338 -8 3 811 613 277 7 0 chr5 29727544 29727692 -122809567 - RSINE1 SINE B4 -14 151 3 3 811 599 294 62 0 chr5 29727920 29728097 -122809162 - ID_B1 SINE B4 -16 208 21 3 811 2499 134 59 74 chr5 29728110 29728349 -122808910 + RMER16 LTR ERVK 1 251 -282 3 811 2549 29 51 127 chr5 29728349 29728743 -122808516 - RLTR10B2 LTR ERVK -1 364 1 3 811 2499 134 59 74 chr5 29728743 29729044 -122808215 + RMER16 LTR ERVK 252 533 0 3 811 619 171 8 8 chr5 29729261 29729379 -122807880 - B1_Mus1 SINE Alu 0 148 31 3 811 2048 128 87 10 chr5 29729911 29730282 -122806977 - ORR1B1 LTR MaLR -8 386 15 3 811 1007 236 130 53 chr5 29730319 29730735 -122806524 + RLTR20B3 LTR ERVK 47 494 -83 3 811 23 0 0 0 chr5 29730757 29730780 -122806479 + AT_rich Low_complexity Low_complexity 1 23 0 3 811 20062 149 27 19 chr5 29731319 29731982 -122805277 + Lx LINE L1 2332 3011 -2875 3 811 1168 60 4 216 chr5 29731982 29732214 -122805045 + B2_Mm1a SINE B2 1 183 -10 3 811 716 86 0 9 chr5 29732215 29732321 -122804938 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 3 811 20062 149 27 19 chr5 29732321 29734220 -122803039 + Lx LINE L1 3012 4945 -941 3 811 1105 81 0 33 chr5 29734220 29734373 -122802886 - B1_Mus1 SINE Alu 0 148 1 3 811 20062 138 26 30 chr5 29734373 29735524 -122801735 + Lx LINE L1 4946 6084 -570 3 811 979 192 30 121 chr5 29735524 29735871 -122801388 - RLTRETN_Mm LTR ERVK 0 409 8 3 811 3092 162 22 7 chr5 29735871 29736418 -122800841 + Lx LINE L1 6095 6649 -5 3 811 423 0 0 0 chr5 29736512 29736559 -122800700 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 811 871 77 132 7 chr5 29736620 29736754 -122800505 - ORR1A3 LTR MaLR 0 326 175 3 811 3212 142 31 42 chr5 29736754 29737081 -122800178 + RLTR22_Mur LTR ERVK 1 333 -1515 3 811 3176 70 18 2 chr5 29737081 29737482 -122799777 + MTB_Mm LTR MaLR 1 407 0 3 811 3212 142 31 42 chr5 29737482 29737822 -122799437 + RLTR22_Mur LTR ERVK 334 661 -1187 3 811 192 77 0 0 chr5 29737834 29737860 -122799399 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 811 1081 58 26 6 chr5 29737860 29738016 -122799243 - B2_Mm1a SINE B2 -33 160 2 3 811 493 150 20 0 chr5 29738129 29738229 -122799030 + CT-rich Low_complexity Low_complexity 1 102 0 3 811 800 226 20 89 chr5 29738243 29738395 -122798864 - B4A SINE B4 -60 232 95 3 811 1642 27 0 0 chr5 29738395 29738581 -122798678 - B2_Mm1a SINE B2 -6 187 2 3 811 800 226 20 89 chr5 29738581 29738676 -122798583 - B4A SINE B4 -198 94 2 3 811 473 146 21 0 chr5 29738897 29738993 -122798266 - RCHARR1 DNA MER1_type -356 618 521 3 811 524 202 46 134 chr5 29738989 29739037 -122798222 - B2_Mm2 SINE B2 -10 185 150 3 811 240 111 0 0 chr5 29739037 29739073 -122798186 + (TATG)n Simple_repeat Simple_repeat 3 38 0 3 811 662 202 46 134 chr5 29739073 29739218 -122798041 - B3A SINE B2 -46 149 9 3 811 1111 172 148 35 chr5 29739308 29739591 -122797668 - RLTR46 LTR ERVK -5 315 1 3 811 704 192 73 83 chr5 29739711 29739915 -122797344 - B3 SINE B2 -5 211 10 3 811 1219 41 0 0 chr5 29739923 29740068 -122797191 - B1_Mm SINE Alu -2 145 1 3 811 748 231 192 23 chr5 29740068 29740329 -122796930 - RCHARR1 DNA MER1_type -478 496 192 3 811 721 196 7 27 chr5 29740332 29740479 -122796780 + B1F2 SINE Alu 6 149 0 3 811 648 312 20 0 chr5 29740496 29740695 -122796564 - RCHARR1 DNA MER1_type -771 203 1 3 811 405 214 25 67 chr5 29741470 29741531 -122795728 - MTD LTR MaLR 0 419 363 3 811 1724 164 104 15 chr5 29741531 29741866 -122795393 - ORR1B2 LTR MaLR 0 367 3 3 811 405 214 25 67 chr5 29741866 29741924 -122795335 - MTD LTR MaLR -57 362 305 3 811 4369 186 91 4 chr5 29741927 29742922 -122794337 - L1_Mur3 LINE L1 -1715 4165 3085 3 811 384 352 41 14 chr5 29743168 29743315 -122793944 - RSINE1 SINE B4 -10 155 5 3 811 207 0 0 0 chr5 29743375 29743398 -122793861 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 811 1121 65 0 0 chr5 29743398 29743536 -122793723 - B1_Mus1 SINE Alu -10 138 1 3 811 1131 83 0 0 chr5 29743671 29743815 -122793444 + B1_Mus1 SINE Alu 1 144 -4 3 811 228 67 0 0 chr5 29743815 29743845 -122793414 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 811 355 232 9 100 chr5 29743887 29743997 -122793262 - BC1_Mm scRNA scRNA -43 109 10 3 811 315 252 96 30 chr5 29745169 29745304 -122791955 + B3 SINE B2 73 216 0 3 811 414 0 0 0 chr5 29745638 29745684 -122791575 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 811 213 39 0 0 chr5 29745684 29745709 -122791550 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 811 981 122 0 43 chr5 29745709 29745761 -122791498 - B2_Mm2 SINE B2 -39 156 111 3 811 2379 65 18 33 chr5 29745761 29746093 -122791166 - IAPLTR2b LTR ERVK 0 327 1 3 811 981 122 0 43 chr5 29746093 29746203 -122791056 - B2_Mm2 SINE B2 -85 110 1 3 811 322 208 59 50 chr5 29746294 29746395 -122790864 - PB1D9 SINE Alu -13 107 6 3 811 314 208 29 10 chr5 29746518 29746620 -122790639 + A-rich Low_complexity Low_complexity 5 108 0 3 811 1386 75 21 0 chr5 29747127 29747153 -122790106 - B2_Mm1t SINE B2 -2 191 162 3 811 387 0 0 0 chr5 29747153 29747196 -122790063 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 3 811 1386 75 21 0 chr5 29747196 29747355 -122789904 - B2_Mm1t SINE B2 -32 161 3 3 811 234 221 0 140 chr5 29747844 29747944 -122789315 + MT2B LTR ERVL 154 239 -362 3 811 351 264 0 11 chr5 29747859 29747947 -122789312 + B1_Mur3 SINE Alu 1 87 -62 3 811 4971 75 25 51 chr5 29749569 29750340 -122786919 - RMER17A LTR ERVK 0 751 1 3 811 190 269 14 29 chr5 29751137 29751206 -122786053 + MER5B DNA MER1_type 99 166 -12 3 811 1118 189 295 28 chr5 29751227 29751586 -122785673 + RMER6B LTR ERVK 5 459 -2 3 811 7157 156 41 33 chr5 29751588 29752872 -122784387 + MYSERV6-int LTR ERVK 1 1295 -7664 3 811 794 166 0 7 chr5 29752920 29753072 -122784187 + CT-rich Low_complexity Low_complexity 3 153 0 3 811 3325 158 31 65 chr5 29753080 29753323 -122783936 - L1_Mur2 LINE L1 -1216 4661 4438 3 101 1197 61 0 0 chr5 29753323 29753470 -122783789 - B1_Mus2 SINE Alu 0 147 1 3 812 3325 158 31 65 chr5 29753470 29753932 -122783327 - L1_Mur2 LINE L1 -1440 4437 3980 3 812 17943 118 42 40 chr5 29753933 29757019 -122780240 - MYSERV6-int LTR ERVK -4282 4677 1583 3 812 904 114 35 21 chr5 29757008 29757151 -122780108 - MYSERV6-int LTR ERVK -7533 1426 1282 3 812 1083 260 11 11 chr5 29757163 29757424 -122779835 - Lx5 LINE L1 -5 7045 6785 3 812 1054 146 0 6 chr5 29757559 29757738 -122779521 - L1_Mur2 LINE L1 -4068 1809 1632 3 812 460 127 0 0 chr5 29757804 29757875 -122779384 + Lx4A LINE L1 5591 5661 -1397 3 812 200 213 21 0 chr5 29758489 29758536 -122778723 + CT-rich Low_complexity Low_complexity 1 48 0 3 812 2316 129 81 15 chr5 29758816 29759211 -122778048 - MTC LTR MaLR 0 421 1 3 812 1422 51 6 6 chr5 29759326 29759502 -122777757 + B2_Mm2 SINE B2 1 176 -19 3 812 431 331 22 77 chr5 29759641 29759913 -122777346 - MTEa LTR MaLR -117 262 6 3 812 697 211 60 11 chr5 29760626 29760808 -122776451 - MTD LTR MaLR -24 395 205 3 812 258 242 0 0 chr5 29760886 29760952 -122776307 + A-rich Low_complexity Low_complexity 1 66 0 3 812 431 308 15 44 chr5 29763288 29763370 -122773889 + ID SINE ID 4 81 -143 3 812 237 254 0 78 chr5 29763370 29763447 -122773812 + PB1D9 SINE Alu 1 71 -49 3 812 1234 55 0 0 chr5 29763494 29763640 -122773619 + B1_Mus2 SINE Alu 1 146 -1 3 812 23 0 0 0 chr5 29766853 29766876 -122770383 + GC_rich Low_complexity Low_complexity 1 23 0 3 812 449 232 111 0 chr5 29766888 29766987 -122770272 - PB1D10 SINE Alu -7 110 1 3 812 1429 163 33 43 chr5 29768126 29768428 -122768831 - Lx4B LINE L1 0 7058 6760 3 812 727 124 0 9 chr5 29768430 29768544 -122768715 + B1_Mus2 SINE Alu 13 125 -22 3 812 197 132 0 26 chr5 29768544 29768583 -122768676 + GA-rich Low_complexity Low_complexity 1 38 0 3 812 1087 56 0 78 chr5 29770413 29770567 -122766692 - B1_Mus2 SINE Alu -5 142 1 3 812 306 262 38 0 chr5 29770759 29770839 -122766420 + PB1D10 SINE Alu 6 88 -29 3 812 249 250 0 0 chr5 29771181 29771233 -122766026 + ID4 SINE ID 1 52 -31 3 812 3789 174 38 29 chr5 29772044 29772735 -122764524 + RMER1B Other Other 359 1055 -11 3 812 741 130 8 39 chr5 29773598 29773726 -122763533 - B1_Mus1 SINE Alu -14 134 11 3 812 246 62 0 0 chr5 29773859 29773891 -122763368 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 812 852 196 86 90 chr5 29773974 29774342 -122762917 - MTC LTR MaLR -8 392 1 4 812 950 230 128 67 chr5 29774683 29774971 -122762288 - MT2A LTR ERVL -10 591 120 4 812 1428 69 16 0 chr5 29774971 29775160 -122762099 + B2_Mm1a SINE B2 2 193 0 4 812 950 225 85 61 chr5 29775160 29775278 -122761981 - MT2A LTR ERVL -414 119 2 4 812 1616 29 14 0 chr5 29776252 29776460 -122760799 + MT2_Mm LTR ERVL 283 493 0 4 812 779 93 37 0 chr5 29776460 29776568 -122760691 + MERVL-int LTR ERVL 1 112 -5373 4 812 593 262 28 0 chr5 29776591 29776732 -122760527 + B1F SINE Alu 5 149 0 4 812 240 35 0 0 chr5 29776732 29776761 -122760498 + (A)n Simple_repeat Simple_repeat 1 29 0 4 812 513 165 223 0 chr5 29776777 29776898 -122760361 - B1_Mur1 SINE Alu 0 149 2 4 812 379 236 44 94 chr5 29776913 29777072 -122760187 + B4 SINE B4 70 220 -72 4 812 712 125 62 8 chr5 29776944 29777073 -122760186 + B1_Mur3 SINE Alu 9 144 -5 4 812 280 329 0 0 chr5 29777159 29777235 -122760024 + PB1D10 SINE Alu 12 87 -30 4 812 349 333 16 8 chr5 29777254 29777375 -122759884 + PB1 SINE Alu 1 122 -5 4 812 835 152 27 20 chr5 29778010 29778158 -122759101 + B1_Mur2 SINE Alu 1 149 0 4 812 1264 96 6 22 chr5 29778286 29778468 -122758791 + B2_Mm1t SINE B2 1 179 -14 4 812 348 101 28 48 chr5 29778537 29778646 -122758613 + B2_Mm2 SINE B2 49 191 -4 4 812 943 220 216 0 chr5 29779038 29779330 -122757929 - MTEb LTR MaLR -7 372 18 4 812 698 253 62 6 chr5 29779442 29779621 -122757638 - B3A SINE B2 -9 189 1 4 812 324 270 42 125 chr5 29779648 29779792 -122757467 - B1_Mur3 SINE Alu -16 133 2 4 812 433 286 99 7 chr5 29779829 29779844 -122757415 + B4 SINE B4 70 220 -69 4 812 512 244 122 0 chr5 29779844 29779967 -122757292 + B1_Mur2 SINE Alu 6 143 -6 4 812 1226 55 0 7 chr5 29780192 29780340 -122756919 + B1_Mus1 SINE Alu 2 148 0 4 812 789 73 3 34 chr5 29780488 29780622 -122756637 + B1_Mus1 SINE Alu 1 120 0 4 812 371 237 115 61 chr5 29780494 29780642 -122756617 + B4A SINE B4 91 246 -46 4 812 452 276 168 0 chr5 29780917 29781167 -122756092 - L1MA9 LINE L1 -195 6117 5826 4 812 829 232 170 50 chr5 29781203 29781562 -122755697 - L1MA9 LINE L1 -588 5724 5323 4 812 281 128 21 0 chr5 29781562 29781609 -122755650 + MTE2b LTR MaLR 331 378 -1 4 812 5240 44 0 0 chr5 29781689 29782304 -122754955 - L1_Mus1 LINE L1 0 6567 5953 4 812 521 276 142 15 chr5 29782360 29782753 -122754506 - L1M3c LINE L1 -4767 1374 932 4 812 1071 201 205 0 chr5 29782854 29783113 -122754146 - MTD LTR MaLR -16 403 92 4 812 611 155 19 0 chr5 29783144 29783247 -122754012 - B1_Mus2 SINE Alu -7 140 36 4 812 272 208 63 25 chr5 29783262 29783341 -122753918 - MTD LTR MaLR -324 97 16 4 812 764 86 148 19 chr5 29784235 29784390 -122752869 + L1_Mus3 LINE L1 6464 6638 0 4 812 207 0 0 0 chr5 29786743 29786766 -122750493 + (T)n Simple_repeat Simple_repeat 1 23 0 4 812 1250 34 7 0 chr5 29786766 29786912 -122750347 - B1_Mus1 SINE Alu 0 148 2 4 812 653 213 165 44 chr5 29787270 29787452 -122749807 - B3 SINE B2 -2 214 11 4 812 697 233 132 152 chr5 29788109 29788398 -122748861 - B4A SINE B4 0 292 10 4 812 632 229 97 0 chr5 29788483 29788627 -122748632 - ID_B1 SINE B4 -62 162 5 4 812 719 268 0 13 chr5 29790583 29790734 -122746525 + B1_Mur1 SINE Alu 1 149 0 4 812 494 217 32 87 chr5 29790845 29790971 -122746288 + PB1D9 SINE Alu 1 119 -1 4 812 725 181 97 8 chr5 29790991 29791125 -122746134 + B1_Mus2 SINE Alu 2 147 0 4 812 226 177 15 46 chr5 29791127 29791163 -122746096 + A-rich Low_complexity Low_complexity 4 39 0 4 812 1589 52 0 0 chr5 29791163 29791355 -122745904 + B2_Mm1t SINE B2 2 193 0 4 812 226 177 15 46 chr5 29791355 29791383 -122745876 + A-rich Low_complexity Low_complexity 40 66 0 4 812 730 56 0 0 chr5 29791579 29791668 -122745591 + B2_Mm2 SINE B2 4 92 -103 4 812 522 0 0 0 chr5 29791668 29791726 -122745533 + (TC)n Simple_repeat Simple_repeat 2 59 0 4 812 642 37 0 0 chr5 29791726 29791806 -122745453 + (TG)n Simple_repeat Simple_repeat 2 82 0 4 812 925 214 45 0 chr5 29792035 29792213 -122745046 + MTEa LTR MaLR 1 186 -193 4 812 378 367 35 15 chr5 29792213 29792234 -122745025 + MT2A LTR ERVL 1 203 -330 4 812 806 93 8 33 chr5 29792233 29792355 -122744904 + B1_Mus1 SINE Alu 11 129 -19 4 812 456 194 11 14 chr5 29792358 29792456 -122744803 + MTEa LTR MaLR 278 373 -6 4 812 1343 44 63 42 chr5 29792534 29792724 -122744535 + B2_Mm2 SINE B2 2 195 0 4 812 715 50 20 0 chr5 29793806 29793906 -122743353 + (TC)n Simple_repeat Simple_repeat 1 102 0 4 812 180 0 0 0 chr5 29795420 29795440 -122741819 + (T)n Simple_repeat Simple_repeat 1 20 0 4 812 442 218 46 0 chr5 29795440 29795551 -122741708 - PB1D10 SINE Alu 0 117 11 4 812 252 195 234 0 chr5 29795561 29795645 -122741614 - B1F2 SINE Alu -10 107 10 4 812 241 0 103 0 chr5 29795755 29795794 -122741465 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 812 723 73 174 61 chr5 29795794 29795915 -122741344 - B1_Mus1 SINE Alu -10 138 1 4 812 1320 113 64 28 chr5 29795973 29796191 -122741068 - URR1A DNA MER1_type 0 226 1 4 812 507 250 135 34 chr5 29796277 29796455 -122740804 + B3A SINE B2 16 211 -5 4 812 390 195 65 0 chr5 29796752 29796829 -122740430 - ID4_ SINE ID 0 83 2 4 812 306 295 19 0 chr5 29796832 29796937 -122740322 - L1M2 LINE L1 -585 5604 5498 4 812 342 306 132 25 chr5 29797008 29797212 -122740047 - L1M2 LINE L1 -824 5319 5094 4 812 286 233 33 0 chr5 29799679 29799739 -122737520 + ID4 SINE ID 7 68 -15 4 812 217 266 158 11 chr5 29801091 29801186 -122736073 + MER5A DNA MER1_type 7 115 -74 4 812 324 0 0 0 chr5 29803540 29803576 -122733683 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 812 470 55 27 0 chr5 29803576 29803649 -122733610 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 4 812 183 162 0 0 chr5 29804412 29804449 -122732810 + (CGG)n Simple_repeat Simple_repeat 1 37 0 4 812 23 33 0 0 chr5 29804665 29804695 -122732564 + GC_rich Low_complexity Low_complexity 1 30 0 4 812 1170 54 0 33 chr5 29806527 29806679 -122730580 - B1_Mus2 SINE Alu 0 147 1 4 812 839 122 7 48 chr5 29807073 29807219 -122730040 + B1_Mur3 SINE Alu 8 147 -2 4 812 850 65 22 7 chr5 29807922 29808061 -122729198 - L1_Mus3 LINE L1 0 6638 6498 4 812 848 84 0 0 chr5 29808064 29808171 -122729088 - U6 snRNA snRNA 0 107 1 4 812 731 236 43 38 chr5 29808487 29808672 -122728587 + B3A SINE B2 13 198 0 4 812 1665 32 0 0 chr5 29809066 29809256 -122728003 + B2_Mm1t SINE B2 1 190 -3 4 812 414 0 0 0 chr5 29810281 29810327 -122726932 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 812 22 0 0 0 chr5 29813296 29813318 -122723941 + GC_rich Low_complexity Low_complexity 1 22 0 4 812 266 353 73 32 chr5 29814794 29814917 -122722342 - B1F1 SINE Alu -17 132 5 4 812 468 0 0 0 chr5 29815690 29815742 -122721517 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 812 1947 226 28 72 chr5 29815767 29816378 -122720881 - RMER1C Other Other -65 1277 694 4 812 469 130 65 0 chr5 29817392 29817469 -122719790 + B1_Mur4 SINE Alu 37 118 -32 4 812 459 0 0 0 chr5 29817469 29817520 -122719739 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 812 212 314 124 0 chr5 29817725 29817830 -122719429 - MIRm SINE MIR -124 152 35 4 812 213 244 22 0 chr5 29818101 29818146 -122719113 + B1F2 SINE Alu 6 51 -98 4 812 236 284 68 0 chr5 29818753 29818827 -122718432 - L1MA8 LINE L1 -199 6092 6014 4 812 787 306 29 0 chr5 29819018 29819293 -122717966 - L1MA8 LINE L1 -556 5735 5453 4 812 271 317 49 113 chr5 29819485 29819510 -122717749 - B2_Mm2 SINE B2 -3 192 167 4 812 258 81 0 0 chr5 29819510 29819547 -122717712 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 812 471 310 76 57 chr5 29819547 29819724 -122717535 - B3 SINE B2 -20 196 3 4 812 937 242 0 52 chr5 29819793 29819985 -122717274 + B3 SINE B2 1 182 -34 4 812 321 155 0 0 chr5 29819985 29820043 -122717216 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 4 812 711 189 24 8 chr5 29820080 29820203 -122717056 - B1_Mus1 SINE Alu -21 127 3 4 812 424 202 0 132 chr5 29820104 29820218 -122717041 - MT2B LTR ERVL -347 254 156 4 812 922 231 152 12 chr5 29820267 29820608 -122716651 - L1MA8 LINE L1 -1135 5005 4617 4 812 902 261 5 40 chr5 29820679 29820903 -122716356 - B3 SINE B2 0 216 1 4 812 414 320 10 0 chr5 29820960 29821060 -122716199 - B1F SINE Alu -48 101 1 4 812 281 297 53 65 chr5 29821069 29821314 -122715945 - L1MA8 LINE L1 -1507 4636 4395 4 812 656 180 12 12 chr5 29821314 29821477 -122715782 + CT-rich Low_complexity Low_complexity 1 163 0 4 812 192 231 0 0 chr5 29821510 29821545 -122715714 + T-rich Low_complexity Low_complexity 31 65 0 4 812 425 254 8 33 chr5 29821545 29821667 -122715592 - PB1D9 SINE Alu -1 119 1 4 812 192 231 0 0 chr5 29821667 29821696 -122715563 + T-rich Low_complexity Low_complexity 2 30 0 4 812 372 200 36 36 chr5 29821798 29821921 -122715338 + (TG)n Simple_repeat Simple_repeat 2 124 0 4 812 279 0 0 0 chr5 29821921 29821952 -122715307 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 812 372 200 36 36 chr5 29821952 29821968 -122715291 + (TG)n Simple_repeat Simple_repeat 2 17 0 4 812 696 197 70 32 chr5 29821968 29821987 -122715272 - RSINE1 SINE B4 0 165 150 4 812 321 26 0 0 chr5 29821987 29822025 -122715234 + (TAGGG)n Simple_repeat Simple_repeat 5 42 0 4 812 696 197 70 32 chr5 29822025 29822162 -122715097 - RSINE1 SINE B4 -16 149 3 4 812 327 261 116 50 chr5 29822163 29822284 -122714975 - L1MA8 LINE L1 -2358 3785 3657 4 812 354 121 0 0 chr5 29822327 29822393 -122714866 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 812 693 194 105 0 chr5 29822393 29822517 -122714742 - B1_Mm SINE Alu -1 146 10 4 812 656 293 50 68 chr5 29822578 29822798 -122714461 - B3 SINE B2 0 216 1 4 812 477 221 132 9 chr5 29822867 29822981 -122714278 - B4A SINE B4 -56 236 109 4 812 207 0 0 0 chr5 29823006 29823029 -122714230 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 812 1393 25 0 0 chr5 29823029 29823189 -122714070 - B2_Mm1a SINE B2 -33 160 1 5 812 308 311 0 22 chr5 29823189 29823278 -122713981 - B4 SINE B4 -195 97 11 4 812 260 304 0 0 chr5 29824342 29824411 -122712848 - RMER30 DNA MER1_type -31 171 103 5 812 624 62 0 0 chr5 29824427 29824508 -122712751 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 812 238 323 40 80 chr5 29824669 29824688 -122712571 - FAM SINE Alu 0 311 293 5 812 208 0 0 59 chr5 29824698 29824732 -122712527 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 5 812 824 193 13 46 chr5 29824732 29824873 -122712386 - B1_Mur4 SINE Alu -11 139 2 5 812 584 241 84 19 chr5 29824873 29825028 -122712231 - B1F SINE Alu -19 292 9 5 812 722 234 25 6 chr5 29825316 29825475 -122711784 - RSINE1 SINE B4 -1 164 3 5 812 774 238 155 0 chr5 29825679 29825860 -122711399 + B3 SINE B2 2 210 -6 5 812 222 169 46 0 chr5 29825920 29825985 -122711274 + CT-rich Low_complexity Low_complexity 2 69 0 5 812 837 194 7 0 chr5 29825985 29826124 -122711135 - B1_Mur2 SINE Alu -5 144 5 5 812 189 0 0 0 chr5 29827385 29827406 -122709853 + (T)n Simple_repeat Simple_repeat 1 21 0 5 812 1517 132 99 57 chr5 29827609 29827923 -122709336 - ORR1C2 LTR MaLR -57 327 1 5 812 1086 182 91 0 chr5 29829475 29829684 -122707575 - RMER1B Other Other -794 272 45 5 812 1473 69 0 31 chr5 29829725 29829920 -122707339 - B2_Mm2 SINE B2 -5 190 2 5 812 376 198 0 44 chr5 29829944 29830034 -122707225 - B3 SINE B2 -4 212 127 5 812 1263 74 0 0 chr5 29830118 29830281 -122706978 + B2_Mm1t SINE B2 2 164 -29 5 812 225 0 0 0 chr5 29830281 29830306 -122706953 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 5 812 1958 173 43 14 chr5 29830469 29830815 -122706444 - ORR1B1 LTR MaLR -8 386 31 5 812 229 216 18 105 chr5 29831620 29831677 -122705582 + MLT1D LTR MaLR 1 52 -453 5 812 215 262 0 23 chr5 29831775 29831861 -122705398 + CT-rich Low_complexity Low_complexity 3 86 0 5 812 342 298 55 66 chr5 29831950 29832133 -122705126 - MLT1C LTR MaLR -209 181 1 5 812 1619 147 44 0 chr5 29834320 29834592 -122702667 + ORR1C1 LTR MaLR 1 284 -94 5 812 590 193 102 0 chr5 29834720 29834850 -122702409 - B3 SINE B2 -39 154 1 5 812 1404 84 16 0 chr5 29834929 29835119 -122702140 + B2_Mm1a SINE B2 1 193 0 5 812 902 270 9 5 chr5 29835694 29835917 -122701342 + ID_B1 SINE B4 1 224 0 5 812 651 301 105 20 chr5 29836127 29836479 -122700780 - MLT1C LTR MaLR -3 464 83 5 812 1996 194 50 159 chr5 29836579 29837136 -122700123 + RMER19C LTR ERVK 12 488 -123 5 812 3286 99 0 2 chr5 29837136 29837600 -122699659 - L1_Mus4 LINE L1 -1 6635 6173 5 812 1996 194 50 159 chr5 29837600 29837715 -122699544 + RMER19C LTR ERVK 489 610 -1 5 812 875 170 0 0 chr5 29838527 29838674 -122698585 - B1_Mur3 SINE Alu -2 147 1 5 812 455 270 42 94 chr5 29838674 29838722 -122698537 - B4 SINE B4 -215 77 40 5 812 407 250 0 22 chr5 29838676 29838766 -122698493 - 4.5SRNA scRNA scRNA -5 89 2 5 812 379 273 6 210 chr5 29838798 29838849 -122698410 - ID_B1 SINE B4 -7 217 172 5 812 945 181 0 20 chr5 29838849 29839001 -122698258 + B1_Mur3 SINE Alu 1 149 0 5 812 379 273 6 210 chr5 29839001 29839116 -122698143 - ID_B1 SINE B4 -53 171 85 5 812 1405 238 87 14 chr5 29839117 29839462 -122697797 + ORR1D2 LTR MaLR 1 370 0 5 812 216 0 0 0 chr5 29839537 29839561 -122697698 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 812 292 205 88 25 chr5 29840040 29840120 -122697139 - L1MC LINE L1 -2415 5467 5383 5 812 1057 274 93 93 chr5 29840117 29840685 -122696574 - Lx5 LINE L1 0 7050 6483 5 812 802 255 92 13 chr5 29840680 29840918 -122696341 - Lx5 LINE L1 -676 6374 6118 5 812 4704 171 64 12 chr5 29840916 29841988 -122695271 + Lx6 LINE L1 4926 6056 -1404 5 812 468 239 47 53 chr5 29842015 29842165 -122695094 + B1F2 SINE Alu 1 149 0 5 812 273 310 0 8 chr5 29842179 29842296 -122694963 - L1MC LINE L1 -754 5370 5255 5 812 189 0 0 0 chr5 29842751 29842772 -122694487 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 812 851 260 81 8 chr5 29842844 29843092 -122694167 + B4A SINE B4 27 292 0 5 812 264 294 0 52 chr5 29843143 29843240 -122694019 + PB1D10 SINE Alu 26 117 0 5 812 288 0 0 0 chr5 29843347 29843379 -122693880 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 812 564 62 0 0 chr5 29843382 29843463 -122693796 + (CAGAGA)n Simple_repeat Simple_repeat 2 82 0 5 812 418 275 0 0 chr5 29843660 29843751 -122693508 + B1F2 SINE Alu 48 138 -11 5 812 938 242 174 59 chr5 29844111 29844785 -122692474 + L1MB8 LINE L1 5412 6175 -3 5 812 1290 20 0 0 chr5 29844786 29844932 -122692327 + B1_Mm SINE Alu 1 146 -1 5 812 582 15 0 0 chr5 29844955 29845022 -122692237 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 812 574 261 85 0 chr5 29845029 29845182 -122692077 - B3A SINE B2 -32 166 1 5 812 335 233 100 0 chr5 29845253 29845343 -122691916 + B3 SINE B2 97 195 -21 5 812 408 223 48 5 chr5 29845601 29845713 -122691546 - B1F SINE Alu -9 140 24 5 812 635 275 24 14 chr5 29845851 29846061 -122691198 + B3 SINE B2 5 216 0 5 812 203 95 48 0 chr5 29846461 29846503 -122690756 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 5 812 2650 120 149 25 chr5 29846543 29847041 -122690218 - Lx4B LINE L1 0 7058 6522 5 812 491 0 17 0 chr5 29847068 29847127 -122690132 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 812 465 19 0 0 chr5 29848138 29848192 -122689067 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 812 297 75 0 0 chr5 29848192 29848232 -122689027 + (GA)n Simple_repeat Simple_repeat 2 41 0 5 812 629 274 0 61 chr5 29848232 29848395 -122688864 - RSINE1 SINE B4 -11 154 2 5 812 546 289 0 14 chr5 29848405 29848549 -122688710 - B1F1 SINE Alu -7 142 1 5 812 441 95 0 0 chr5 29850194 29850257 -122687002 + (T)n Simple_repeat Simple_repeat 1 63 0 5 812 1193 68 0 0 chr5 29850257 29850404 -122686855 - B1_Mm SINE Alu 0 147 1 5 812 849 264 31 117 chr5 29850634 29850738 -122686521 + B4 SINE B4 1 83 -209 5 812 372 43 0 0 chr5 29850738 29850784 -122686475 + (CTTG)n Simple_repeat Simple_repeat 2 47 0 5 812 849 264 31 117 chr5 29850784 29850996 -122686263 + B4 SINE B4 84 290 -2 5 812 367 313 59 7 chr5 29851349 29851538 -122685721 + MLT1F1 LTR MaLR 216 382 -187 5 812 217 103 0 108 chr5 29852067 29852078 -122685181 + T-rich Low_complexity Low_complexity 51 60 0 5 812 1556 57 0 15 chr5 29852078 29852274 -122684985 - B2_Mm1a SINE B2 0 193 1 5 812 217 103 0 108 chr5 29852274 29852327 -122684932 + T-rich Low_complexity Low_complexity 3 50 0 5 812 308 273 0 0 chr5 29852332 29852420 -122684839 - PB1D10 SINE Alu 0 117 30 5 812 361 258 84 105 chr5 29852446 29852589 -122684670 + RSINE1 SINE B4 2 141 -24 5 812 819 248 69 20 chr5 29857521 29857723 -122679536 - B3 SINE B2 0 216 5 5 812 734 181 0 14 chr5 29858352 29858498 -122678761 - URR1B DNA MER1_type 0 225 82 5 812 306 0 0 0 chr5 29858621 29858655 -122678604 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 812 612 229 15 15 chr5 29858685 29858818 -122678441 - B3A SINE B2 -47 151 19 5 812 624 287 7 0 chr5 29858847 29858990 -122678269 - ID_B1 SINE B4 0 224 81 5 812 963 231 82 186 chr5 29859915 29860247 -122677012 - RLTR16 LTR ERVK 0 505 252 5 812 1078 88 0 20 chr5 29860247 29860398 -122676861 - B1_Mus1 SINE Alu 0 148 1 5 812 963 231 82 186 chr5 29860398 29860629 -122676630 - RLTR16 LTR ERVK -254 251 1 5 812 3095 249 50 99 chr5 29860629 29860648 -122676611 - MYSERV16_I-int LTR ERVK 0 2842 2824 5 812 225 0 0 0 chr5 29860648 29860673 -122676586 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 5 812 6447 161 70 20 chr5 29860673 29862364 -122674895 - MYSERV16_I-int LTR ERVK -19 2823 388 5 812 1440 70 11 0 chr5 29862599 29862784 -122674475 - B2_Mm1t SINE B2 -6 187 1 5 812 886 161 14 0 chr5 29863236 29863379 -122673880 - B1_Mus2 SINE Alu 0 147 3 5 812 291 114 0 0 chr5 29863398 29863442 -122673817 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 812 562 260 93 83 chr5 29864281 29864474 -122672785 + B3A SINE B2 1 195 0 5 812 597 161 53 9 chr5 29864488 29864601 -122672658 + PB1D9 SINE Alu 2 119 -1 5 812 21 57 0 0 chr5 29865202 29865237 -122672022 + AT_rich Low_complexity Low_complexity 1 35 0 5 812 931 217 78 4 chr5 29865263 29865508 -122671751 + L1_Mur3 LINE L1 3672 3934 -1946 5 812 32372 103 7 5 chr5 29865505 29871476 -122665783 + L1_Mus2 LINE L1 583 6566 0 5 812 498 319 9 23 chr5 29871502 29871720 -122665539 + L1M2 LINE L1 4292 4506 -1637 5 812 3209 43 8 5 chr5 29871726 29872121 -122665138 + MTA_Mm LTR MaLR 1 396 0 5 812 658 24 0 0 chr5 29872121 29872206 -122665053 + MTA_Mm-int LTR MaLR 1 85 -1013 5 812 454 167 11 32 chr5 29872235 29872328 -122664931 + B1_Mur2 SINE Alu 59 149 0 5 812 254 244 12 37 chr5 29872349 29872430 -122664829 + L1M2 LINE L1 4874 4952 -1191 5 812 1101 82 0 20 chr5 29872430 29872579 -122664680 + B1_Mus1 SINE Alu 1 146 -2 5 812 251 220 0 0 chr5 29872580 29872639 -122664620 + A-rich Low_complexity Low_complexity 1 59 0 5 812 789 265 113 8 chr5 29872644 29873017 -122664242 + L1M2 LINE L1 4961 5372 -771 5 812 695 156 23 23 chr5 29873039 29873170 -122664089 + B1_Mur3 SINE Alu 14 144 -5 5 812 426 171 0 0 chr5 29873345 29873415 -122663844 + B3A SINE B2 1 70 -128 5 812 1151 88 0 0 chr5 29873421 29873591 -122663668 - ORR1A3 LTR MaLR -156 170 1 5 812 355 253 21 21 chr5 29873629 29873726 -122663533 - B4A SINE B4 -4 288 192 5 812 1359 220 86 0 chr5 29873769 29874073 -122663186 + MTD LTR MaLR 1 330 -89 5 812 575 235 7 35 chr5 29874250 29874391 -122662868 - ID_B1 SINE B4 -9 215 79 5 812 766 301 57 93 chr5 29874576 29875081 -122662178 + L1MB3 LINE L1 5639 6125 -58 5 812 396 40 0 0 chr5 29875081 29875131 -122662128 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 812 1148 65 0 0 chr5 29875131 29875284 -122661975 - B2_Mm1t SINE B2 -40 153 1 5 812 302 198 111 0 chr5 29875321 29875402 -122661857 + PB1 SINE Alu 24 113 -14 6 812 1232 91 16 0 chr5 29875569 29875756 -122661503 + B2_Mm2 SINE B2 6 195 0 6 812 671 173 8 8 chr5 29876698 29876832 -122660427 - URR1A DNA MER1_type -13 213 80 6 812 983 239 24 0 chr5 29877153 29877358 -122659901 - ID_B1 SINE B4 -13 211 2 6 812 234 81 0 0 chr5 29878783 29878820 -122658439 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 6 812 877 150 8 0 chr5 29878820 29878953 -122658306 - B1_Mus1 SINE Alu -14 134 1 6 812 936 147 125 0 chr5 29879109 29879293 -122657966 + MTC LTR MaLR 1 207 -214 6 812 242 297 0 0 chr5 29879316 29879390 -122657869 + (TA)n Simple_repeat Simple_repeat 1 74 0 6 812 24 32 0 0 chr5 29879455 29879486 -122657773 + AT_rich Low_complexity Low_complexity 1 31 0 6 812 331 304 0 0 chr5 29879512 29879614 -122657645 + MER57-int LTR ERV1 7155 7256 -281 6 812 1190 62 0 0 chr5 29879846 29879992 -122657267 + B1_Mus1 SINE Alu 2 147 -1 6 812 251 191 16 0 chr5 29880056 29880119 -122657140 + GA-rich Low_complexity Low_complexity 2 65 0 6 812 982 163 47 77 chr5 29880124 29880289 -122656970 + MTC LTR MaLR 196 366 -55 6 812 2111 87 93 3 chr5 29880289 29880589 -122656670 - ORR1A2 LTR MaLR 0 327 1 6 812 11135 126 63 14 chr5 29880589 29882458 -122654801 - ORR1A2-int LTR MaLR 0 1963 4 6 812 2390 108 3 3 chr5 29882463 29882788 -122654471 - ORR1A2 LTR MaLR -2 325 1 6 812 982 163 47 77 chr5 29882788 29882848 -122654411 + MTC LTR MaLR 367 420 -1 6 812 323 271 12 12 chr5 29882880 29882966 -122654293 + CT-rich Low_complexity Low_complexity 3 88 0 6 101 1087 244 73 52 chr5 29884375 29884631 -122652628 + ORR1D2 LTR MaLR 1 269 -101 6 813 2198 106 0 63 chr5 29884631 29884982 -122652277 - ORR1A4 LTR MaLR 0 329 1 6 813 1087 244 73 52 chr5 29884982 29885011 -122652248 + ORR1D2 LTR MaLR 270 292 -78 6 813 400 153 165 0 chr5 29884984 29885069 -122652190 - ORR1D1 LTR MaLR -279 99 1 6 813 1314 215 49 82 chr5 29885069 29885744 -122651515 - ORR1D1-int LTR MaLR -41 1922 830 6 813 3576 186 51 73 chr5 29885744 29886011 -122651248 - RLTR13C1 LTR ERVK 0 983 712 6 813 1218 62 0 0 chr5 29886011 29886157 -122651102 + B1_Mm SINE Alu 2 147 0 6 813 3576 186 51 73 chr5 29886157 29886894 -122650365 - RLTR13C1 LTR ERVK -272 711 1 6 813 2966 210 53 65 chr5 29886894 29887314 -122649945 - ORR1D1-int LTR MaLR -541 829 443 6 813 851 144 208 22 chr5 29887314 29887492 -122649767 - B3 SINE B2 -5 211 1 6 813 2966 210 53 65 chr5 29887492 29887887 -122649372 - ORR1D1-int LTR MaLR -928 442 24 6 813 6689 99 38 34 chr5 29887955 29888076 -122649183 + Lx2 LINE L1 5779 5903 -1094 6 813 2676 71 188 0 chr5 29888076 29888443 -122648816 - RLTR10C LTR ERVK 0 436 1 6 813 7654 108 36 31 chr5 29888443 29889533 -122647726 + Lx2 LINE L1 5904 6997 0 6 813 1244 216 138 6 chr5 29889533 29889836 -122647423 - ORR1D1 LTR MaLR -31 343 1 6 813 304 215 279 0 chr5 29890018 29890097 -122647162 + RSINE1 SINE B4 3 103 -62 6 813 715 103 0 0 chr5 29890169 29890266 -122646993 + B1_Mus2 SINE Alu 42 138 -9 6 813 324 0 0 0 chr5 29890266 29890302 -122646957 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 813 266 193 111 22 chr5 29890314 29890404 -122646855 - L1M2 LINE L1 -527 5773 5676 6 813 879 200 19 73 chr5 29890429 29890634 -122646625 - B3A SINE B2 -4 194 1 6 813 553 317 127 30 chr5 29890787 29891119 -122646140 + MLT1D LTR MaLR 117 480 -25 6 813 762 286 279 26 chr5 29892027 29892407 -122644852 - MLT2B2 LTR ERVL -88 479 4 6 813 296 242 45 0 chr5 29892755 29892821 -122644438 - Tigger7 DNA MER2_type -40 2451 2383 6 813 558 324 152 8 chr5 29892867 29893110 -122644149 - Tigger7 DNA MER2_type -2199 292 15 6 813 308 241 161 29 chr5 29893465 29893602 -122643657 - L1M5 LINE L1 -435 5744 5590 6 813 1090 76 14 0 chr5 29893602 29893747 -122643512 + B1_Mm SINE Alu 1 147 0 6 813 494 318 39 0 chr5 29894032 29894161 -122643098 + RSINE1 SINE B4 2 135 -30 6 813 312 27 0 0 chr5 29894162 29894199 -122643060 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 813 507 17 0 0 chr5 29894207 29894267 -122642992 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 813 612 211 97 8 chr5 29894300 29894424 -122642835 + RSINE1 SINE B4 30 164 -1 6 813 539 248 9 0 chr5 29894472 29894585 -122642674 + PB1D9 SINE Alu 7 120 0 6 813 544 205 200 50 chr5 29894594 29894774 -122642485 + B3 SINE B2 4 210 -6 6 813 341 235 29 36 chr5 29894836 29894973 -122642286 + (TA)n Simple_repeat Simple_repeat 2 137 0 6 813 246 184 26 35 chr5 29895013 29895126 -122642133 + (TATATG)n Simple_repeat Simple_repeat 1 112 0 6 813 248 269 36 43 chr5 29895149 29895289 -122641970 + (TATATG)n Simple_repeat Simple_repeat 2 140 0 6 813 195 167 0 0 chr5 29895301 29895343 -122641916 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 813 36 91 0 0 chr5 29895935 29896034 -122641225 + GC_rich Low_complexity Low_complexity 1 99 0 6 813 1026 217 5 5 chr5 29896837 29897041 -122640218 - B3 SINE B2 -11 205 2 6 813 513 252 7 35 chr5 29897993 29898137 -122639122 - B1F SINE Alu -9 140 1 6 813 533 238 111 40 chr5 29899401 29899699 -122637560 - L1MC2 LINE L1 -226 6118 5800 6 813 537 273 79 13 chr5 29899714 29899866 -122637393 - RSINE1 SINE B4 0 165 4 6 813 285 306 0 45 chr5 29900041 29900130 -122637129 - PB1D7 SINE Alu 0 120 36 6 813 490 203 189 17 chr5 29900182 29900362 -122636897 - L1MC2 LINE L1 -502 5842 5632 6 813 221 245 0 75 chr5 29900377 29900430 -122636829 - ID4_ SINE ID 0 83 35 6 813 284 324 16 107 chr5 29900453 29900574 -122636685 - PB1D10 SINE Alu -7 110 1 6 813 406 286 88 39 chr5 29900605 29900800 -122636459 - L1MC2 LINE L1 -836 5310 5101 6 813 2513 141 42 35 chr5 29900800 29901279 -122635980 - RLTR45 LTR ERVK 0 482 1 6 813 406 286 88 39 chr5 29901279 29901389 -122635870 - L1MC2 LINE L1 -1046 5100 4990 6 813 225 0 0 0 chr5 29901484 29901509 -122635750 + (GCTG)n Simple_repeat Simple_repeat 2 26 0 6 813 303 254 0 29 chr5 29901525 29901594 -122635665 - ID2 SINE ID -14 69 3 6 813 713 144 27 54 chr5 29901637 29901784 -122635475 - B1_Mus2 SINE Alu 0 147 5 6 813 1212 105 28 6 chr5 29901795 29901977 -122635282 - B2_Mm2 SINE B2 -9 186 1 6 813 370 351 53 8 chr5 29902014 29902146 -122635113 - RSINE1 SINE B4 -21 144 7 6 813 593 236 169 17 chr5 29902368 29902545 -122634714 + B3 SINE B2 2 205 -11 6 813 1422 75 5 0 chr5 29902564 29902752 -122634507 - B2_Mm1t SINE B2 -3 190 2 6 813 743 233 19 60 chr5 29902762 29902789 -122634470 - B3 SINE B2 -10 206 181 6 813 345 100 0 0 chr5 29902789 29902839 -122634420 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 813 743 233 19 60 chr5 29902839 29903026 -122634233 - B3 SINE B2 -36 180 1 6 813 1056 248 82 15 chr5 29903046 29903509 -122633750 - L1MA5 LINE L1 -358 5942 5449 6 813 595 281 1 26 chr5 29903552 29903713 -122633546 - B3 SINE B2 0 216 61 6 813 180 0 0 0 chr5 29903814 29903834 -122633425 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 813 1075 73 15 0 chr5 29903834 29903971 -122633288 - B1_Mus1 SINE Alu -9 139 1 6 813 3160 47 36 3 chr5 29903985 29904372 -122632887 + MTB LTR MaLR 1 400 0 6 813 1223 112 6 0 chr5 29904450 29904620 -122632639 - B2_Mm2 SINE B2 -23 172 2 6 813 2168 81 57 25 chr5 29904628 29904945 -122632314 - ORR1A2 LTR MaLR 0 327 1 6 813 624 224 161 93 chr5 29904976 29905256 -122632003 + RMER15 LTR ERVL 277 575 0 6 813 250 273 12 72 chr5 29905276 29905359 -122631900 - RSINE1 SINE B4 -4 161 84 6 813 791 280 50 0 chr5 29905445 29905627 -122631632 - B3 SINE B2 -24 192 2 6 813 602 214 18 9 chr5 29905661 29905788 -122631471 - B3 SINE B2 0 216 93 6 813 42 0 0 0 chr5 29906099 29906141 -122631118 + AT_rich Low_complexity Low_complexity 1 42 0 6 813 557 149 55 82 chr5 29906174 29906284 -122630975 - B3 SINE B2 -108 108 2 6 813 401 240 85 22 chr5 29906414 29906543 -122630716 - PB1D9 SINE Alu -1 148 9 6 813 651 218 178 6 chr5 29906563 29906743 -122630516 - B3 SINE B2 -5 211 1 6 813 344 239 90 80 chr5 29906815 29906915 -122630344 + B4 SINE B4 2 102 -190 6 813 2061 97 32 13 chr5 29907447 29907759 -122629500 - ORR1A3 LTR MaLR -8 318 1 6 813 331 319 25 16 chr5 29907760 29907881 -122629378 + B4A SINE B4 111 232 -60 6 813 22 0 0 0 chr5 29908136 29908158 -122629101 + AT_rich Low_complexity Low_complexity 1 22 0 6 813 467 153 231 25 chr5 29908158 29908279 -122628980 + B1_Mus1 SINE Alu 3 148 0 6 813 344 270 75 62 chr5 29908698 29908844 -122628415 - B1_Mur1 SINE Alu 0 149 2 6 813 25 0 0 0 chr5 29909839 29909864 -122627395 + AT_rich Low_complexity Low_complexity 1 25 0 6 813 281 47 0 23 chr5 29910288 29910332 -122626927 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 813 208 139 0 0 chr5 29910339 29910375 -122626884 + (T)n Simple_repeat Simple_repeat 1 36 0 6 813 638 279 97 22 chr5 29911179 29911399 -122625860 + B4A SINE B4 1 233 -59 6 813 663 171 8 33 chr5 29911553 29911674 -122625585 + PB1D9 SINE Alu 3 120 0 6 813 3162 104 40 2 chr5 29911674 29912176 -122625083 - L1_Mm LINE L1 -487 5396 4876 6 813 3023 48 11 3 chr5 29912176 29912549 -122624710 + L1_Mus1 LINE L1 6190 6565 -2 6 813 220 261 52 24 chr5 29912720 29912802 -122624457 - PB1D10 SINE Alu 0 149 52 6 813 261 0 0 0 chr5 29914076 29914105 -122623154 + (T)n Simple_repeat Simple_repeat 1 29 0 6 813 383 56 19 0 chr5 29914365 29914419 -122622840 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 813 253 271 129 0 chr5 29914419 29914504 -122622755 - B1_Mur3 SINE Alu -10 139 44 6 813 231 337 35 11 chr5 29914535 29914622 -122622637 - L2b LINE L2 0 3375 3287 6 813 190 341 43 11 chr5 29914728 29914820 -122622439 - L2b LINE L2 -279 3147 3053 6 813 934 276 76 12 chr5 29915068 29915541 -122621718 + L1MB7 LINE L1 5539 6069 -115 6 813 799 199 35 0 chr5 29915545 29915686 -122621573 + B1_Mus1 SINE Alu 2 147 -1 6 813 411 280 255 14 chr5 29915718 29915863 -122621396 + B3A SINE B2 1 180 -18 6 813 353 250 0 134 chr5 29915895 29915963 -122621296 + B1_Mur2 SINE Alu 2 66 -83 6 813 1242 90 31 21 chr5 29915963 29916155 -122621104 - B2_Mm2 SINE B2 0 195 2 6 813 353 250 0 134 chr5 29916155 29916257 -122621002 + B1_Mur2 SINE Alu 67 149 0 6 813 430 252 28 46 chr5 29916529 29916637 -122620622 + RSINE1 SINE B4 3 108 -57 6 813 599 209 69 76 chr5 29916714 29916859 -122620400 + B1_Mur4 SINE Alu 6 149 -1 7 813 278 315 58 83 chr5 29916719 29916875 -122620384 + B4A SINE B4 95 246 -46 7 813 29 78 0 0 chr5 29917013 29917077 -122620182 + AT_rich Low_complexity Low_complexity 1 64 0 7 813 398 243 51 51 chr5 29917993 29918110 -122619149 + PB1D10 SINE Alu 1 117 0 7 813 593 225 48 14 chr5 29918413 29918602 -122618657 + B3 SINE B2 1 193 -2 7 813 17197 72 31 19 chr5 29918734 29920606 -122616653 + L1VL4 LINE L1 197 2109 -1450 7 813 653 80 257 0 chr5 29920606 29920719 -122616540 + B1_Mus1 SINE Alu 2 143 -5 7 813 17197 67 38 27 chr5 29920719 29920834 -122616425 + L1VL4 LINE L1 2110 2193 -1366 7 813 3158 63 5 0 chr5 29920834 29921228 -122616031 - MTA_Mm LTR MaLR 0 396 1 7 813 17197 67 38 27 chr5 29921228 29922489 -122614770 + L1VL4 LINE L1 2194 3506 -53 7 813 1000 80 73 0 chr5 29922489 29922626 -122614633 + B1_Mm SINE Alu 1 147 0 7 813 17197 67 38 27 chr5 29922626 29922690 -122614569 + L1VL4 LINE L1 3507 3551 -8 7 813 183 80 0 0 chr5 29922690 29922715 -122614544 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 813 229 237 0 0 chr5 29922905 29922943 -122614316 + ID_B1 SINE B4 82 119 -105 7 813 777 277 14 38 chr5 29923817 29924027 -122613232 - B3 SINE B2 -11 205 1 7 813 257 0 0 29 chr5 29924069 29924103 -122613156 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 813 21 57 0 0 chr5 29926140 29926175 -122611084 + AT_rich Low_complexity Low_complexity 1 35 0 7 813 1404 73 15 25 chr5 29926546 29926742 -122610517 + B2_Mm2 SINE B2 2 195 0 7 813 521 224 10 0 chr5 29926832 29926930 -122610329 + PB1D7 SINE Alu 2 100 -20 7 813 437 279 43 35 chr5 29926995 29927110 -122610149 + RSINE1 SINE B4 11 126 -39 7 813 469 308 35 7 chr5 29928086 29928230 -122609029 - MER21B LTR ERV1 -169 694 547 7 813 922 197 51 10 chr5 29929566 29929761 -122607498 - B3 SINE B2 -13 203 1 7 813 439 324 0 142 chr5 29929768 29929851 -122607408 - ID_B1 SINE B4 -2 222 145 7 813 564 15 0 0 chr5 29929851 29929916 -122607343 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 813 513 255 0 135 chr5 29929916 29929995 -122607264 - B1F1 SINE Alu -85 64 7 7 813 439 324 0 142 chr5 29929995 29930037 -122607222 - ID_B1 SINE B4 -80 144 47 7 813 424 273 29 29 chr5 29930025 29930127 -122607132 - PB1D9 SINE Alu -15 105 4 7 813 378 304 20 168 chr5 29930127 29930231 -122607028 - ID SINE ID -143 81 8 7 813 613 207 52 7 chr5 29930304 29930440 -122606819 + B1_Mur3 SINE Alu 2 143 -6 7 813 354 197 0 40 chr5 29930474 29930548 -122606711 + ID4 SINE ID 2 72 -11 7 813 5980 146 5 54 chr5 29930594 29931207 -122606052 + L1_Mm LINE L1 4692 5287 -596 7 813 1117 72 0 0 chr5 29931207 29931345 -122605914 + B1_Mm SINE Alu 1 138 -9 7 813 5980 146 5 54 chr5 29931345 29931381 -122605878 + L1_Mm LINE L1 5288 5293 -590 7 813 1085 69 162 6 chr5 29931381 29931541 -122605718 + B2_Mm2 SINE B2 3 187 -8 7 813 5980 146 5 54 chr5 29931541 29931608 -122605651 + L1_Mm LINE L1 5294 5358 -525 7 813 1041 108 114 0 chr5 29931608 29931774 -122605485 + B2_Mm2 SINE B2 5 189 -6 7 813 1364 83 5 25 chr5 29931780 29931978 -122605281 + B2_Mm2 SINE B2 2 195 0 7 813 5980 146 5 54 chr5 29931978 29932405 -122604854 + L1_Mm LINE L1 5359 5788 -95 7 813 284 148 66 0 chr5 29932475 29932536 -122604723 + MERVL_2A-int LTR ERVL 5565 5629 -132 7 813 283 247 14 0 chr5 29932536 29932609 -122604650 + ORR1A3-int LTR MaLR 567 640 -1323 7 813 229 125 25 0 chr5 29932644 29932684 -122604575 + MT2C_Mm LTR ERVL 1 41 -452 7 813 1352 130 14 6 chr5 29932659 29932881 -122604378 + MT2C_Mm LTR ERVL 264 475 0 7 813 677 205 0 0 chr5 29934056 29934168 -122603091 + PB1D9 SINE Alu 9 120 0 7 813 539 159 9 27 chr5 29934982 29935092 -122602167 - B1_Mur4 SINE Alu 0 150 43 7 813 713 161 0 17 chr5 29935094 29935214 -122602045 + (TCTCTG)n Simple_repeat Simple_repeat 5 122 0 7 813 365 93 0 36 chr5 29935214 29935270 -122601989 - B1_Mus1 SINE Alu -88 60 7 7 813 508 186 242 7 chr5 29937616 29937763 -122599496 - B3A SINE B2 -37 179 2 7 813 275 247 33 56 chr5 29937769 29937859 -122599400 - PB1D9 SINE Alu 0 120 33 7 813 470 263 114 41 chr5 29939044 29939167 -122598092 - RSINE1 SINE B4 -31 134 3 7 813 588 266 63 21 chr5 29939251 29939393 -122597866 - B1F SINE Alu 0 149 2 7 813 428 215 109 51 chr5 29939525 29939662 -122597597 - B1_Mus2 SINE Alu -1 146 2 7 813 427 151 0 64 chr5 29940002 29940080 -122597179 - B1_Mur3 SINE Alu -2 147 75 7 813 351 0 0 0 chr5 29940100 29940139 -122597120 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 813 1144 122 47 0 chr5 29940139 29940311 -122596948 - B2_Mm2 SINE B2 -15 180 1 7 813 43 35 0 0 chr5 29940431 29940488 -122596771 + AT_rich Low_complexity Low_complexity 1 57 0 7 813 224 135 0 55 chr5 29940974 29941029 -122596230 + T-rich Low_complexity Low_complexity 1 52 0 7 813 268 244 171 23 chr5 29941029 29941117 -122596142 - PB1D9 SINE Alu -1 119 19 7 813 201 162 0 0 chr5 29941261 29941298 -122595961 + T-rich Low_complexity Low_complexity 6 42 0 7 813 892 251 50 6 chr5 29941785 29941965 -122595294 - B3 SINE B2 -28 188 1 7 813 667 172 25 25 chr5 29942969 29943103 -122594156 - B1_Mur4 SINE Alu 0 150 16 7 813 351 246 19 102 chr5 29944128 29944302 -122592957 - B3 SINE B2 -40 153 2 7 813 428 154 242 0 chr5 29944409 29944500 -122592759 + PB1D9 SINE Alu 1 113 -7 7 813 1299 75 26 41 chr5 29944819 29945014 -122592245 + B2_Mm1t SINE B2 2 193 0 7 813 243 0 0 0 chr5 29945037 29945064 -122592195 + (A)n Simple_repeat Simple_repeat 1 27 0 7 813 570 243 6 44 chr5 29945547 29945565 -122591694 - ID_B1 SINE B4 0 224 138 7 813 880 81 0 46 chr5 29945565 29945695 -122591564 - B1_Mus2 SINE Alu -22 125 2 7 813 389 221 7 136 chr5 29945695 29945725 -122591534 - MT2B LTR ERVL -454 147 137 7 813 570 243 6 44 chr5 29945695 29945706 -122591553 - ID_B1 SINE B4 0 137 72 7 813 422 378 30 0 chr5 29946491 29946626 -122590633 + RSINE1 SINE B4 5 143 -22 7 813 188 296 36 24 chr5 29947078 29947161 -122590098 + L2 LINE L2 157 240 -3179 7 813 273 342 158 0 chr5 29947978 29948098 -122589161 + B1F1 SINE Alu 1 139 -10 7 813 341 265 29 0 chr5 29948273 29948341 -122588918 - tRNA-Ala-GCY_ tRNA tRNA -2 73 4 7 813 391 197 0 2 chr5 29948281 29948349 -122588910 - ID4_ SINE ID -84 68 2 7 813 321 89 0 0 chr5 29948360 29948405 -122588854 + (TTTC)n Simple_repeat Simple_repeat 2 46 0 7 813 377 274 25 22 chr5 29949270 29949383 -122587876 + PB1D10 SINE Alu 3 117 -31 7 813 265 229 42 14 chr5 29949384 29949455 -122587804 + Lx8 LINE L1 6414 6486 -987 7 813 843 240 99 24 chr5 29949448 29949700 -122587559 + Lx8 LINE L1 6683 6953 -520 7 813 1858 141 69 7 chr5 29949713 29950019 -122587240 - ORR1B2 LTR MaLR -42 325 1 7 813 309 256 267 6 chr5 29950023 29950089 -122587170 + Lx8 LINE L1 6967 7064 -409 7 813 1350 77 27 0 chr5 29950089 29950272 -122586987 - B2_Mm2 SINE B2 -6 189 2 7 813 309 256 267 6 chr5 29950272 29950366 -122586893 + Lx8 LINE L1 7065 7169 -304 7 813 336 24 0 0 chr5 29950497 29950538 -122586721 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 813 25 75 0 0 chr5 29950648 29950701 -122586558 + AT_rich Low_complexity Low_complexity 1 53 0 7 813 229 269 121 60 chr5 29950709 29950792 -122586467 + BC1_Mm scRNA scRNA 3 90 -62 7 813 239 273 24 133 chr5 29952569 29952734 -122584525 + B1F SINE Alu 1 147 -2 7 813 271 359 0 25 chr5 29952734 29952814 -122584445 + ID2 SINE ID 6 83 0 7 813 189 269 39 0 chr5 29953544 29953596 -122583663 + MER5B DNA MER1_type 123 176 -2 7 813 674 280 15 35 chr5 29954208 29954408 -122582851 - B3A SINE B2 0 198 3 7 813 285 304 0 0 chr5 29954490 29954559 -122582700 - RSINE1 SINE B4 -6 159 91 7 813 212 0 36 0 chr5 29954812 29954840 -122582419 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 7 813 1186 48 14 0 chr5 29954840 29954987 -122582272 - B1_Mur4 SINE Alu -1 149 1 7 813 1053 260 106 70 chr5 29954994 29955408 -122581851 - RMER13A LTR ERVK -421 439 11 7 813 353 298 31 41 chr5 29955401 29955499 -122581760 - RSINE1 SINE B4 -66 99 3 7 813 898 244 24 0 chr5 29955947 29956152 -122581107 + B3 SINE B2 1 210 -6 7 813 635 278 25 26 chr5 29956321 29956522 -122580737 - B3A SINE B2 -10 206 2 7 813 748 193 44 0 chr5 29956575 29956710 -122580549 - B1_Mur4 SINE Alu -1 149 9 7 813 5418 59 3 3 chr5 29956803 29957503 -122579756 - L1Md_F3 LINE L1 0 6584 5885 7 813 329 281 11 22 chr5 29959667 29959758 -122577501 - L1MC LINE L1 -2031 5754 5665 7 813 323 265 37 56 chr5 29959823 29959931 -122577328 - L1M5 LINE L1 -590 5589 5484 7 813 432 208 73 111 chr5 29959933 29960052 -122577207 - PB1D9 SINE Alu 0 149 25 7 813 1012 212 345 65 chr5 29960052 29960495 -122576764 + RMER2 LTR ERV1 1 567 0 7 813 432 187 74 123 chr5 29960495 29960517 -122576742 - PB1D9 SINE Alu -95 25 5 7 813 485 309 174 21 chr5 29960537 29960778 -122576481 + Lx8 LINE L1 7041 7318 -155 7 813 1291 65 12 0 chr5 29960778 29960948 -122576311 + B2_Mm2 SINE B2 2 173 -22 7 813 229 67 0 0 chr5 29961125 29961155 -122576104 + B1_Mus2 SINE Alu 105 134 -13 7 813 1215 41 0 0 chr5 29961194 29961339 -122575920 + B1_Mus2 SINE Alu 2 146 -1 7 813 206 0 69 0 chr5 29961339 29961368 -122575891 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 7 813 857 193 0 0 chr5 29961565 29961710 -122575549 - B1_Mur4 SINE Alu -5 145 1 7 813 654 171 233 42 chr5 29962793 29962982 -122574277 - URR1B DNA MER1_type 0 225 1 7 813 251 228 0 140 chr5 29962989 29963013 -122574246 + MT2B LTR ERVL 147 155 -446 7 813 384 217 23 35 chr5 29963013 29963099 -122574160 + B1_Mur2 SINE Alu 2 86 -63 7 813 264 159 12 138 chr5 29963512 29963592 -122573667 + B1_Mus2 SINE Alu 77 146 -1 7 813 420 20 0 0 chr5 29964126 29964175 -122573084 + (TTTC)n Simple_repeat Simple_repeat 1 49 0 7 813 608 231 8 2 chr5 29964388 29964522 -122572737 + B1_Mur1 SINE Alu 2 134 -15 7 813 360 0 0 0 chr5 29964585 29964625 -122572634 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 813 411 212 12 12 chr5 29965075 29965161 -122572098 - PB1D10 SINE Alu -4 113 28 8 813 1930 118 67 3 chr5 29966080 29966379 -122570880 - ORR1A2 LTR MaLR -9 318 1 8 813 6960 115 16 5 chr5 29966379 29967446 -122569813 - ORR1A2-int LTR MaLR 0 1963 1 8 813 3523 126 140 11 chr5 29967771 29968384 -122568875 - RMER6A LTR ERVK -4 752 74 8 813 522 46 0 0 chr5 29968384 29968449 -122568810 + (TTTTC)n Simple_repeat Simple_repeat 4 68 0 8 813 3523 126 140 11 chr5 29968449 29968501 -122568758 - RMER6A LTR ERVK -683 73 1 8 813 1237 34 7 0 chr5 29969024 29969170 -122568089 - B1_Mus1 SINE Alu 0 148 2 8 813 1089 60 109 92 chr5 29969175 29969359 -122567900 - B2_Mm2 SINE B2 -8 187 1 8 813 3324 30 5 10 chr5 29969604 29970002 -122567257 - MTA_Mm LTR MaLR 0 396 1 8 813 219 114 0 0 chr5 29970159 29970194 -122567065 + (TTG)n Simple_repeat Simple_repeat 2 36 0 8 813 395 315 145 8 chr5 29970206 29970337 -122566922 - RSINE1 SINE B4 -14 151 3 8 813 430 170 127 36 chr5 29970600 29970710 -122566549 - PB1D9 SINE Alu 0 120 1 8 813 244 122 0 24 chr5 29970711 29970753 -122566506 - B3A SINE B2 -156 42 2 8 813 221 0 35 0 chr5 29971474 29971503 -122565756 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 8 813 570 193 126 0 chr5 29971504 29971623 -122565636 - B1_Mus2 SINE Alu -13 134 1 8 813 739 167 23 8 chr5 29971697 29971830 -122565429 - B1_Mur4 SINE Alu -1 149 15 8 813 188 103 51 0 chr5 29973437 29973476 -122563783 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 8 813 508 263 178 91 chr5 29973505 29973735 -122563524 - B4A SINE B4 -42 250 1 8 813 235 246 16 0 chr5 29973809 29973870 -122563389 + L1M5 LINE L1 4026 4087 -2059 8 813 22 0 0 0 chr5 29973997 29974019 -122563240 + AT_rich Low_complexity Low_complexity 1 22 0 8 813 881 207 41 36 chr5 29974059 29974254 -122563005 - B3A SINE B2 -1 197 2 8 813 860 174 0 0 chr5 29974289 29974427 -122562832 + B1_Mus2 SINE Alu 9 146 -1 8 813 1479 180 22 42 chr5 29974416 29974729 -122562530 + RLTR11A2 LTR ERVK 221 527 0 8 813 1345 85 16 0 chr5 29974926 29975115 -122562144 - B2_Mm1a SINE B2 0 193 2 8 813 1959 56 0 23 chr5 29975416 29975672 -122561587 + L1Md_F2 LINE L1 6333 6582 0 8 813 238 362 75 0 chr5 29975733 29975813 -122561446 + B1F SINE Alu 4 89 -60 8 813 467 296 39 14 chr5 29975999 29976248 -122561011 + L1MA5 LINE L1 5752 6023 -274 8 813 307 239 0 11 chr5 29976251 29976340 -122560919 + L1MA5 LINE L1 6209 6296 -4 8 813 1349 70 11 11 chr5 29976350 29976537 -122560722 + B2_Mm2 SINE B2 1 187 -8 8 813 519 206 93 0 chr5 29976540 29976637 -122560622 + PB1D10 SINE Alu 5 110 -7 8 813 23 0 0 0 chr5 29976716 29976739 -122560520 + AT_rich Low_complexity Low_complexity 1 23 0 8 813 1070 88 0 58 chr5 29976750 29976906 -122560353 + B1_Mus2 SINE Alu 1 147 0 8 813 681 123 106 8 chr5 29978024 29978147 -122559112 + B1_Mur2 SINE Alu 15 149 0 8 813 218 319 87 22 chr5 29978682 29978820 -122558439 - L2 LINE L2 -1262 2157 2011 8 813 317 263 22 149 chr5 29979431 29979565 -122557694 + PB1D10 SINE Alu 1 117 0 8 813 857 192 149 5 chr5 29979904 29980092 -122557167 + B3 SINE B2 1 215 -1 8 813 239 237 3 30 chr5 29980439 29980514 -122556745 - B4 SINE B4 -76 89 14 8 813 261 111 65 22 chr5 29980776 29980822 -122556437 + B3A SINE B2 2 49 -149 8 813 1089 80 0 0 chr5 29981063 29981201 -122556058 - B1_Mus1 SINE Alu -10 138 1 8 813 256 0 20 102 chr5 29982534 29982583 -122554676 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 8 813 292 288 267 46 chr5 29982963 29983094 -122554165 - RSINE1 SINE B4 -4 161 2 8 813 335 325 92 58 chr5 29983326 29983532 -122553727 + L1M5 LINE L1 5466 5678 -484 8 813 786 161 286 0 chr5 29983688 29983856 -122553403 + B3 SINE B2 1 216 0 8 813 682 266 16 48 chr5 29983935 29984121 -122553138 - B3A SINE B2 -1 197 18 8 813 482 219 46 37 chr5 29985353 29985462 -122551797 - PB1D9 SINE Alu 0 120 11 8 813 408 88 0 0 chr5 29985483 29985540 -122551719 + (T)n Simple_repeat Simple_repeat 1 57 0 8 813 630 236 31 0 chr5 29985560 29985687 -122551572 - B1_Mus1 SINE Alu -12 136 6 8 813 287 311 34 43 chr5 29985922 29986028 -122551231 + PB1D10 SINE Alu 18 117 0 8 813 622 158 150 0 chr5 29986280 29986407 -122550852 - B1_Mur2 SINE Alu -2 147 2 8 813 420 97 0 0 chr5 29986448 29986510 -122550749 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 8 813 672 158 94 36 chr5 29986510 29986648 -122550611 - B1_Mur4 SINE Alu 0 150 5 8 813 219 300 0 0 chr5 29987135 29987185 -122550074 + B4 SINE B4 87 136 -156 8 813 1823 181 82 21 chr5 29987278 29987666 -122549593 - MTD LTR MaLR -5 414 3 8 813 1191 48 0 0 chr5 29987751 29987897 -122549362 + B1_Mus2 SINE Alu 2 147 0 8 813 180 111 0 0 chr5 29987898 29987925 -122549334 + (GAA)n Simple_repeat Simple_repeat 2 28 0 8 813 280 300 86 12 chr5 29988939 29989020 -122548239 - B1F SINE Alu -53 96 10 8 813 560 198 18 18 chr5 29989337 29989450 -122547809 + B1_Mur3 SINE Alu 37 149 0 8 813 271 268 97 14 chr5 29989542 29989614 -122547645 - B1_Mus1 SINE Alu -52 96 19 8 813 513 241 108 43 chr5 29990618 29990757 -122546502 + B1_Mur2 SINE Alu 2 149 0 8 813 257 222 37 0 chr5 29990782 29990836 -122546423 + ID4_ SINE ID 18 73 -10 8 813 802 167 14 21 chr5 29990965 29991106 -122546153 - B1_Mur4 SINE Alu 0 150 11 8 813 346 274 81 10 chr5 29991400 29991552 -122545707 + L1MB1 LINE L1 5436 5599 -581 8 813 488 209 43 9 chr5 29991628 29991744 -122545515 + PB1D9 SINE Alu 1 120 0 8 813 1227 102 6 28 chr5 29991747 29991929 -122545330 + B2_Mm2 SINE B2 4 181 -14 8 813 529 288 8 16 chr5 29991982 29992109 -122545150 - B3 SINE B2 -90 126 1 8 813 509 319 12 59 chr5 29992132 29992302 -122544957 - RSINE1 SINE B4 -2 163 2 8 813 389 218 18 35 chr5 29992302 29992416 -122544843 + L1MB1 LINE L1 5844 5955 -213 8 813 345 231 28 19 chr5 29992483 29992589 -122544670 + L1MB4 LINE L1 6074 6180 0 8 813 471 223 21 11 chr5 29992597 29992692 -122544567 + RSINE1 SINE B4 2 97 -68 8 813 251 230 79 26 chr5 29992756 29992832 -122544427 + B1_Mm SINE Alu 33 112 -35 8 813 3227 55 0 8 chr5 29993574 29993973 -122543286 + MTA_Mm LTR MaLR 1 396 0 8 813 693 207 28 0 chr5 29994267 29994412 -122542847 - B1_Mur4 SINE Alu -1 149 1 8 813 435 316 192 6 chr5 29994945 29995117 -122542142 + B4 SINE B4 1 204 -88 8 813 553 205 138 8 chr5 29995029 29995152 -122542107 + B1_Mur1 SINE Alu 11 149 0 8 813 675 262 75 0 chr5 29995161 29995321 -122541938 + B4A SINE B4 62 233 -59 8 813 1549 22 28 0 chr5 29995464 29995643 -122541616 - B2_Mm1a SINE B2 -8 185 2 8 813 315 66 0 76 chr5 29995709 29995775 -122541484 + (CATA)n Simple_repeat Simple_repeat 2 62 0 8 813 257 254 95 0 chr5 29995789 29995852 -122541407 + B4A SINE B4 219 287 -5 8 813 261 57 0 0 chr5 29995962 29995997 -122541262 + (CATA)n Simple_repeat Simple_repeat 1 35 0 8 813 551 318 38 0 chr5 29995999 29996131 -122541128 + RSINE1 SINE B4 2 138 -27 8 813 194 347 14 14 chr5 29996414 29996487 -122540772 + MER5A DNA MER1_type 10 82 -107 8 813 453 260 35 16 chr5 29996656 29996795 -122540464 - B1F SINE Alu -1 148 6 8 813 184 30 29 29 chr5 29997028 29997062 -122540197 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 813 1152 69 0 0 chr5 29997070 29997215 -122540044 - B1_Mm SINE Alu 0 147 3 8 813 1529 208 9 52 chr5 29997215 29997472 -122539787 - MTC LTR MaLR -61 360 118 8 813 1039 160 47 42 chr5 29997472 29997687 -122539572 - URR1B DNA MER1_type 0 225 10 8 813 711 107 8 51 chr5 29997660 29997778 -122539481 - MTC LTR MaLR -308 113 1 8 813 269 387 28 19 chr5 29998244 29998352 -122538907 + ID_B1 SINE B4 84 192 -32 8 813 217 400 30 37 chr5 29998352 29998378 -122538881 + B1_Mus2 SINE Alu 3 135 -12 8 813 491 239 83 97 chr5 29998689 29998833 -122538426 + B3 SINE B2 48 189 -6 8 813 935 110 164 6 chr5 29999278 29999443 -122537816 + B2_Mm1t SINE B2 2 192 -1 8 813 1120 56 28 0 chr5 29999475 29999618 -122537641 + B1_Mus1 SINE Alu 2 148 0 8 813 210 255 8 157 chr5 29999632 29999753 -122537506 + B2_Mm2 SINE B2 79 181 -14 8 813 448 226 49 57 chr5 29999788 29999910 -122537349 + B1_Mm SINE Alu 26 146 -1 8 813 616 170 152 0 chr5 30000039 30000151 -122537108 + B3 SINE B2 2 130 -86 1 813 439 290 75 14 chr5 30000225 30000372 -122536887 + RSINE1 SINE B4 4 159 -6 2 813 599 216 65 0 chr5 30000422 30000561 -122536698 + B1_Mus1 SINE Alu 1 148 0 3 813 297 75 0 0 chr5 30000561 30000601 -122536658 + (CATA)n Simple_repeat Simple_repeat 2 41 0 4 813 626 286 25 35 chr5 30000620 30000819 -122536440 + B3A SINE B2 1 197 -1 5 813 1123 57 43 0 chr5 30002819 30002960 -122534299 - B1_Mus1 SINE Alu 0 148 2 6 813 285 29 0 0 chr5 30003035 30003069 -122534190 + (T)n Simple_repeat Simple_repeat 1 34 0 7 813 861 111 0 143 chr5 30003849 30004017 -122533242 + B1_Mus1 SINE Alu 2 145 -3 8 813 851 149 14 14 chr5 30004038 30004181 -122533078 + B1_Mur3 SINE Alu 2 144 -5 9 813 1492 77 0 20 chr5 30004188 30004386 -122532873 + B2_Mm2 SINE B2 1 194 -1 1 813 469 339 113 18 chr5 30004407 30004629 -122532630 + Tigger1 DNA MER2_type 246 488 -1930 1 813 313 314 95 0 chr5 30004776 30004881 -122532378 + B1F1 SINE Alu 35 149 0 1 813 1727 216 79 0 chr5 30005052 30005389 -122531870 - RMER5 LTR ERV1 -8 526 168 1 813 1137 48 7 52 chr5 30005389 30005544 -122531715 + B1_Mus1 SINE Alu 1 148 0 1 813 1727 216 79 0 chr5 30005544 30005585 -122531674 - RMER5 LTR ERV1 -367 167 119 1 813 301 277 10 19 chr5 30005590 30005693 -122531566 - L1_Rod LINE L1 -917 4930 4829 1 813 855 132 22 14 chr5 30005721 30005859 -122531400 - B1_Mm SINE Alu 0 147 9 1 813 244 340 10 0 chr5 30005911 30006008 -122531251 - L1M2 LINE L1 -1265 4878 4781 1 813 312 206 43 14 chr5 30006008 30006077 -122531182 - B3 SINE B2 -143 73 3 1 813 1108 83 115 35 chr5 30006241 30006415 -122530844 - B2_Mm2 SINE B2 -6 189 2 1 813 1244 98 247 17 chr5 30006472 30006711 -122530548 - Lx4A LINE L1 -1 7057 6764 2 813 523 147 126 0 chr5 30006706 30006801 -122530458 + Lx4A LINE L1 6572 6678 -380 2 813 781 251 35 7 chr5 30006841 30007019 -122530240 + B3 SINE B2 5 184 -14 2 813 802 101 116 0 chr5 30007019 30007148 -122530111 + B1_Mus1 SINE Alu 5 148 0 2 813 704 272 47 42 chr5 30007148 30007161 -122530098 + B3A SINE B2 185 197 -1 2 813 507 249 43 60 chr5 30007197 30007210 -122530049 - B2_Mm2 SINE B2 -3 192 180 2 813 1153 62 7 7 chr5 30007210 30007356 -122529903 - B1_Mus2 SINE Alu 0 147 2 2 813 649 211 19 24 chr5 30007356 30007526 -122529733 - B3 SINE B2 -16 179 12 2 813 443 356 31 12 chr5 30007544 30007706 -122529553 - RSINE1 SINE B4 0 165 1 2 813 347 256 0 47 chr5 30007713 30007799 -122529460 - ID4_ SINE ID 0 83 2 2 813 371 259 31 3 chr5 30007801 30007896 -122529363 - B1F SINE Alu -21 96 4 2 813 288 311 13 13 chr5 30007938 30008013 -122529246 - RSINE1 SINE B4 -4 161 87 2 813 2335 182 98 34 chr5 30008107 30008608 -122528651 - RMER16 LTR ERVK 0 533 1 2 813 347 74 37 0 chr5 30008624 30008678 -122528581 + (GGGA)n Simple_repeat Simple_repeat 3 58 0 3 813 1613 190 109 50 chr5 30008678 30008743 -122528516 - RMER10A LTR ERVL -14 428 372 3 813 3187 71 20 35 chr5 30008743 30009197 -122528062 - LTRIS5 LTR ERV1 0 447 1 3 813 1613 190 109 50 chr5 30009197 30009535 -122527724 - RMER10A LTR ERVL -71 371 1 3 813 431 222 12 0 chr5 30009535 30009616 -122527643 - RSINE1 SINE B4 -76 89 8 2 813 1476 52 5 55 chr5 30009872 30010074 -122527185 + B2_Mm1a SINE B2 2 193 0 3 813 766 199 7 14 chr5 30010788 30010936 -122526323 + B1_Mm SINE Alu 1 147 0 3 813 453 256 286 24 chr5 30010940 30011108 -122526151 + ID_B1 SINE B4 12 223 -1 3 813 363 312 147 0 chr5 30011094 30011264 -122525995 - MLT1C LTR MaLR -49 418 224 3 813 231 114 0 0 chr5 30011270 30011305 -122525954 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 813 2014 161 147 59 chr5 30011401 30011504 -122525755 - RMER1B Other Other -11 1055 943 3 813 573 52 0 0 chr5 30011504 30011581 -122525678 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 3 813 2014 161 147 59 chr5 30011581 30011919 -122525340 - RMER1B Other Other -124 942 575 3 813 314 276 99 27 chr5 30012241 30012349 -122524910 + PB1 SINE Alu 1 125 -2 4 813 1266 105 28 0 chr5 30012564 30012745 -122524514 - B2_Mm2 SINE B2 -6 189 4 4 813 384 216 102 0 chr5 30012811 30012899 -122524360 - MTEb LTR MaLR -2 377 281 4 813 186 43 0 0 chr5 30013331 30013354 -122523905 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 4 813 793 161 39 0 chr5 30013354 30013484 -122523775 - B1_Mur2 SINE Alu -13 136 2 4 813 379 315 128 34 chr5 30013715 30013738 -122523521 + L2a LINE L2 3202 3223 -203 4 813 960 162 7 0 chr5 30013738 30013886 -122523373 - B1_Mur4 SINE Alu -1 149 1 4 813 379 315 128 34 chr5 30013886 30014066 -122523193 + L2a LINE L2 3224 3424 -2 4 813 308 256 198 0 chr5 30014125 30014211 -122523048 + RSINE1 SINE B4 61 163 -2 4 813 238 259 217 25 chr5 30014808 30015006 -122522253 + L1MB5 LINE L1 5912 6147 -27 4 813 501 250 73 0 chr5 30015029 30015153 -122522106 - RSINE1 SINE B4 -31 134 2 4 813 555 186 118 24 chr5 30015209 30015336 -122521923 + B1_Mur4 SINE Alu 11 149 -1 5 813 530 191 209 0 chr5 30015345 30015450 -122521809 - B1_Mur2 SINE Alu -13 136 10 5 813 245 258 0 192 chr5 30015354 30015474 -122521785 - MT2B LTR ERVL -350 251 155 5 814 552 233 66 8 chr5 30015500 30015621 -122521638 - RSINE1 SINE B4 -3 162 35 5 814 936 235 21 26 chr5 30015656 30015843 -122521416 - B3 SINE B2 -1 215 30 5 814 719 226 14 35 chr5 30015843 30015985 -122521274 + B1_Mur1 SINE Alu 2 140 -9 5 814 781 257 38 43 chr5 30015987 30016198 -122521061 - B3 SINE B2 -1 215 6 5 814 605 283 78 5 chr5 30016212 30016418 -122520841 - ID_B1 SINE B4 -3 221 1 5 814 1727 69 43 31 chr5 30016450 30016466 -122520793 - L1_Mus2 LINE L1 0 6566 6556 5 814 3154 55 134 0 chr5 30016466 30016885 -122520374 - MT2C_Mm LTR ERVL 0 475 1 5 814 1727 69 43 31 chr5 30016885 30017122 -122520137 - L1_Mus2 LINE L1 -11 6555 6310 5 814 1251 27 0 0 chr5 30017230 30017376 -122519883 - B1_Mus2 SINE Alu 0 147 2 6 814 215 291 25 25 chr5 30017393 30017474 -122519785 - B4 SINE B4 -210 82 2 6 814 234 62 0 0 chr5 30017515 30017547 -122519712 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 6 814 1262 69 0 0 chr5 30017547 30017707 -122519552 - B2_Mm2 SINE B2 -33 162 3 6 814 882 277 11 0 chr5 30017737 30017921 -122519338 + B3 SINE B2 2 187 -29 6 814 483 123 0 24 chr5 30018337 30018420 -122518839 + RMER17A2 LTR ERVK 1 81 -825 6 814 584 126 225 0 chr5 30018420 30018531 -122518728 - MERVK26-int LTR ERVK -5798 1121 986 6 814 2700 51 30 3 chr5 30018511 30018846 -122518413 - MERVK26-int LTR ERVK -2655 4264 3921 6 814 1135 182 31 55 chr5 30018846 30019101 -122518158 - RLTR26 LTR ERVK -393 249 1 6 814 1474 163 48 0 chr5 30019105 30019356 -122517903 - MTC LTR MaLR -54 367 105 6 814 1048 143 34 6 chr5 30019357 30019533 -122517726 + B2_Mm2 SINE B2 2 182 -13 6 814 324 0 0 0 chr5 30019858 30019894 -122517365 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 814 294 157 78 0 chr5 30019894 30019945 -122517314 - RSINE1 SINE B4 -41 124 70 7 814 207 0 0 0 chr5 30020020 30020043 -122517216 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 814 1188 62 0 0 chr5 30020047 30020193 -122517066 - B1_Mm SINE Alu 0 147 2 7 814 241 172 121 30 chr5 30020612 30020678 -122516581 + RMER10A LTR ERVL 318 389 -53 7 814 832 191 53 26 chr5 30020680 30020872 -122516387 + B3 SINE B2 2 178 -38 7 814 284 209 0 11 chr5 30020872 30020959 -122516300 + GA-rich Low_complexity Low_complexity 1 86 0 7 814 335 329 0 0 chr5 30021019 30021098 -122516161 - RSINE1 SINE B4 -84 81 3 7 814 1266 101 0 16 chr5 30021252 30021434 -122515825 + B2_Mm2 SINE B2 1 179 -16 7 814 3721 151 93 7 chr5 30021539 30022268 -122514991 + RMER13A LTR ERVK 43 860 0 7 814 434 226 0 191 chr5 30022268 30022353 -122514906 + B1_Mur1 SINE Alu 29 98 -51 8 814 970 62 61 8 chr5 30022353 30022484 -122514775 + B1_Mm SINE Alu 1 138 -9 8 814 240 35 0 0 chr5 30022484 30022513 -122514746 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 814 434 226 0 191 chr5 30022513 30022556 -122514703 + B1_Mur1 SINE Alu 99 132 -17 8 814 306 0 0 0 chr5 30022556 30022590 -122514669 + (GA)n Simple_repeat Simple_repeat 1 34 0 8 814 1357 206 187 67 chr5 30023690 30023859 -122513400 - RMER4B LTR ERVK -16 569 358 8 814 245 29 29 0 chr5 30023859 30023893 -122513366 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 814 1164 29 0 7 chr5 30023893 30024030 -122513229 - B1_Mus2 SINE Alu -9 138 3 8 814 1357 206 187 67 chr5 30024030 30024293 -122512966 - RMER4B LTR ERVK -228 357 58 8 814 1631 32 5 0 chr5 30024293 30024482 -122512777 + B2_Mm1t SINE B2 1 190 -3 8 814 1198 36 0 7 chr5 30024485 30024626 -122512633 + B1_Mus2 SINE Alu 1 140 -7 8 814 321 82 0 0 chr5 30024628 30024677 -122512582 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 8 814 1357 206 187 67 chr5 30024677 30024696 -122512563 - RMER4B LTR ERVK -528 57 44 8 814 1467 65 11 11 chr5 30024696 30024882 -122512377 - B2_Mm2 SINE B2 -9 186 1 9 814 1357 206 187 67 chr5 30024882 30024913 -122512346 - RMER4B LTR ERVK -542 43 19 8 814 1389 94 0 10 chr5 30025569 30025762 -122511497 + B2_Mm2 SINE B2 1 191 -4 9 814 1319 53 20 60 chr5 30027279 30027363 -122509896 + B2_Mm2 SINE B2 4 88 -107 9 814 4579 54 28 12 chr5 30027363 30027941 -122509318 + LTRIS_Mus LTR ERV1 1 587 0 9 814 1319 53 20 60 chr5 30027941 30028056 -122509203 + B2_Mm2 SINE B2 89 195 0 9 814 986 151 0 19 chr5 30028250 30028405 -122508854 - B2_Mm2 SINE B2 -43 152 1 9 814 241 282 83 14 chr5 30028425 30028497 -122508762 + RMER10A LTR ERVL 318 394 -48 9 814 536 208 19 0 chr5 30028499 30028605 -122508654 + PB1D9 SINE Alu 5 112 -8 9 814 266 306 35 26 chr5 30029158 30029272 -122507987 + RMER21B LTR ERV1 453 567 -275 9 814 844 85 17 8 chr5 30030256 30030374 -122506885 - PB1D9 SINE Alu 0 120 2 9 814 347 279 130 14 chr5 30030946 30031084 -122506175 + ID_B1 SINE B4 70 223 -1 9 814 1475 65 5 0 chr5 30031111 30031297 -122505962 + B2_Mm1a SINE B2 2 188 -5 1 814 1147 48 7 14 chr5 30031308 30031456 -122505803 + B1_Mus1 SINE Alu 2 148 0 1 814 1165 88 0 0 chr5 30031475 30031622 -122505637 + B1_Mm SINE Alu 1 147 0 1 814 1465 64 0 16 chr5 30031639 30031829 -122505430 + B2_Mm2 SINE B2 1 187 -8 1 814 257 175 0 0 chr5 30031842 30031882 -122505377 + B1_Mus1 SINE Alu 1 40 -108 1 814 720 71 0 0 chr5 30031894 30031993 -122505266 + (TAGA)n Simple_repeat Simple_repeat 1 99 0 1 814 366 238 51 96 chr5 30031997 30032192 -122505067 + B3A SINE B2 1 192 -3 1 814 826 211 81 15 chr5 30032195 30032392 -122504867 + B3 SINE B2 2 211 -5 1 814 798 53 26 26 chr5 30032394 30032511 -122504748 + B2_Mm2 SINE B2 79 195 0 1 814 714 246 0 0 chr5 30032525 30032655 -122504604 + B1_Mur3 SINE Alu 7 136 -13 1 814 224 59 29 0 chr5 30032655 30032689 -122504570 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1 814 531 211 58 0 chr5 30032896 30033000 -122504259 + ID_B1 SINE B4 1 110 -114 1 814 1371 291 96 8 chr5 30033974 30034359 -122502900 + MTD LTR MaLR 1 419 0 1 814 387 127 0 0 chr5 30034378 30034433 -122502826 + B3 SINE B2 1 55 -161 1 814 1775 180 3 3 chr5 30034430 30034736 -122502523 - RLTR16 LTR ERVK -199 306 1 1 814 441 194 41 0 chr5 30034999 30035097 -122502162 + MLT1C LTR MaLR 81 182 -285 1 814 317 115 34 0 chr5 30035167 30035222 -122502037 - ORR1D2 LTR MaLR 0 421 323 1 814 604 292 14 20 chr5 30035241 30035388 -122501871 + B3A SINE B2 15 160 -38 1 814 459 35 0 0 chr5 30035389 30035446 -122501813 + (CATA)n Simple_repeat Simple_repeat 2 58 0 1 814 1063 65 0 41 chr5 30035446 30035575 -122501684 + B1_Mus1 SINE Alu 10 138 -10 1 814 306 0 0 0 chr5 30035575 30035609 -122501650 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 814 1063 65 0 41 chr5 30035609 30035624 -122501635 + B1_Mus1 SINE Alu 139 148 0 1 814 1002 246 103 72 chr5 30035637 30035749 -122501510 - ORR1D2 LTR MaLR -37 333 196 1 814 1155 95 71 27 chr5 30035749 30035933 -122501326 + B2_Mm2 SINE B2 1 192 -3 1 814 1002 246 103 72 chr5 30035933 30036140 -122501119 - ORR1D2 LTR MaLR -175 195 4 1 814 854 258 51 47 chr5 30036178 30036414 -122500845 + 7SK RNA RNA 4 240 -91 1 814 342 0 0 0 chr5 30036791 30036829 -122500430 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 814 684 290 156 4 chr5 30036891 30037147 -122500112 - RLTR28 LTR ERVL -229 295 1 1 814 781 306 12 16 chr5 30037222 30037440 -122499819 + ID_B1 SINE B4 31 248 -44 1 814 1047 102 87 43 chr5 30037539 30037724 -122499535 + B2_Mm2 SINE B2 1 193 -2 1 814 1510 34 6 0 chr5 30037725 30037900 -122499359 + B2_Mm1a SINE B2 1 176 -17 1 814 558 0 0 0 chr5 30037900 30037962 -122499297 + (GAAA)n Simple_repeat Simple_repeat 1 62 0 1 814 1321 79 0 38 chr5 30037962 30038146 -122499113 + B2_Mm2 SINE B2 2 178 -17 1 814 444 37 0 0 chr5 30038148 30038202 -122499057 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 814 697 219 0 0 chr5 30038222 30038341 -122498918 + B1_Mur1 SINE Alu 18 136 -13 1 814 301 309 54 87 chr5 30038341 30038371 -122498888 + B4A SINE B4 103 246 -46 1 814 403 200 89 0 chr5 30038553 30038643 -122498616 - B3 SINE B2 -8 208 111 1 814 849 167 272 89 chr5 30038705 30038960 -122498299 - RLTR18B LTR ERVK -48 464 163 1 814 586 248 7 52 chr5 30038971 30039107 -122498152 - RLTR18B LTR ERVK -486 130 1 1 814 617 212 26 0 chr5 30039107 30039220 -122498039 - B3 SINE B2 -100 116 1 1 814 243 300 136 95 chr5 30039293 30039669 -122497590 - RMER10A LTR ERVL -28 414 23 1 814 773 184 0 0 chr5 30039669 30039810 -122497449 + ORR1C1 LTR MaLR 1 141 -237 1 814 1566 31 5 30 chr5 30039810 30040007 -122497252 - B2_Mm1a SINE B2 0 193 2 1 814 665 139 24 5 chr5 30040031 30040169 -122497090 - B1_Mur3 SINE Alu -10 140 1 1 814 251 225 62 97 chr5 30040070 30040183 -122497076 - RLTR25B LTR ERVK -530 498 390 1 814 1235 54 0 0 chr5 30040198 30040346 -122496913 - B1_Mus1 SINE Alu 0 148 1 1 814 529 148 175 42 chr5 30040355 30040470 -122496789 + ORR1C1 LTR MaLR 138 268 -110 1 814 866 253 81 56 chr5 30040470 30040755 -122496504 - RMER20A LTR ERVK 0 516 225 1 814 602 286 30 18 chr5 30040767 30040931 -122496328 - RMER20A LTR ERVK -453 174 9 1 814 582 176 46 0 chr5 30040939 30041047 -122496212 + ORR1C1 LTR MaLR 266 378 0 1 814 744 136 0 48 chr5 30041087 30041211 -122496048 - B2_Mm1a SINE B2 -1 192 75 1 814 1088 59 0 0 chr5 30041361 30041497 -122495762 + B1_Mus1 SINE Alu 1 136 -12 1 814 3245 46 8 0 chr5 30041497 30041886 -122495373 - MTA_Mm LTR MaLR -4 392 1 1 814 3906 47 12 4 chr5 30042512 30043004 -122494255 + RLTR1C LTR ERV1 1 496 -7 1 814 314 221 25 25 chr5 30043119 30043198 -122494061 - HAL1-3A_ME LINE L1 -804 2054 1976 1 814 747 60 0 10 chr5 30043505 30043606 -122493653 - B1_Mus2 SINE Alu -1 146 47 1 814 542 111 25 100 chr5 30043631 30043751 -122493508 - B2_Mm1t SINE B2 -9 184 74 1 814 983 68 114 0 chr5 30043766 30043898 -122493361 - B1_Mus2 SINE Alu 0 147 1 1 814 1484 64 27 0 chr5 30043914 30044101 -122493158 - B2_Mm1t SINE B2 0 193 2 1 814 2142 92 86 5 chr5 30044101 30044521 -122492738 - LTRIS3 LTR ERV1 -93 419 1 1 814 815 66 0 19 chr5 30044521 30044620 -122492639 + B1_Mus2 SINE Alu 41 139 -8 1 814 261 0 0 0 chr5 30044620 30044649 -122492610 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 814 22 35 0 0 chr5 30044869 30044898 -122492361 + AT_rich Low_complexity Low_complexity 1 29 0 1 814 1443 62 0 40 chr5 30044898 30045099 -122492160 + B2_Mm2 SINE B2 1 193 -2 1 814 182 91 30 0 chr5 30045102 30045135 -122492124 + (TA)n Simple_repeat Simple_repeat 1 34 0 1 814 815 148 82 0 chr5 30045215 30045350 -122491909 - B1_Mur4 SINE Alu 0 150 5 1 814 212 333 20 0 chr5 30045389 30045440 -122491819 + ID4_ SINE ID 4 55 -28 1 814 592 95 32 0 chr5 30046268 30046363 -122490896 - MT2C_Mm LTR ERVL -77 398 301 1 814 924 103 0 0 chr5 30046364 30046529 -122490730 + (GA)n Simple_repeat Simple_repeat 1 165 0 1 814 498 176 59 0 chr5 30046816 30046901 -122490358 + B1_Mm SINE Alu 15 104 -43 1 814 1002 271 136 21 chr5 30046968 30047386 -122489873 + RMER5 LTR ERV1 30 495 -39 1 814 357 82 0 0 chr5 30047543 30047592 -122489667 + (CTTA)n Simple_repeat Simple_repeat 2 50 0 1 814 375 280 59 22 chr5 30047596 30047731 -122489528 - RSINE1 SINE B4 0 165 26 1 814 284 267 194 22 chr5 30048258 30048392 -122488867 + RMER5 LTR ERV1 33 189 -345 1 814 598 213 21 42 chr5 30048394 30048536 -122488723 + B1_Mur2 SINE Alu 2 140 -9 1 814 1036 69 0 0 chr5 30048832 30048963 -122488296 - B1_Mus2 SINE Alu -16 131 1 1 814 374 212 28 5 chr5 30049361 30049449 -122487810 - B1F1 SINE Alu 0 120 33 1 814 473 286 79 26 chr5 30049509 30049699 -122487560 + RMER5 LTR ERV1 195 394 -140 1 814 506 162 15 140 chr5 30049683 30049701 -122487558 + MT2B LTR ERVL 146 240 -361 1 814 1130 48 0 39 chr5 30049701 30049788 -122487471 + B1_Mus1 SINE Alu 2 88 -60 1 814 3244 75 170 12 chr5 30049788 30050275 -122486984 - LTRIS2 LTR ERV1 0 564 1 1 814 506 162 15 140 chr5 30050275 30050305 -122486954 + MT2B LTR ERVL 241 264 -337 1 814 1130 48 0 39 chr5 30050305 30050340 -122486919 + B1_Mus1 SINE Alu 89 148 0 1 814 1204 50 0 0 chr5 30050467 30050607 -122486652 - B1_Mm SINE Alu -7 140 1 1 814 1309 87 48 11 chr5 30050607 30050792 -122486467 - B2_Mm2 SINE B2 -2 193 1 1 814 275 313 82 24 chr5 30051006 30051091 -122486168 + ID_B1 SINE B4 133 222 -2 1 814 323 316 0 15 chr5 30051092 30051148 -122486111 + polypurine Low_complexity Low_complexity 1 54 0 1 814 1153 82 0 0 chr5 30051148 30051295 -122485964 + B1_Mus1 SINE Alu 2 148 0 1 814 323 316 0 15 chr5 30051295 30051373 -122485886 + polypurine Low_complexity Low_complexity 55 132 0 1 814 639 60 0 0 chr5 30051373 30051457 -122485802 + (GGAA)n Simple_repeat Simple_repeat 4 87 0 1 814 514 238 270 35 chr5 30052326 30052500 -122484759 - B3 SINE B2 0 216 2 1 814 279 327 29 29 chr5 30052505 30052609 -122484650 - PB1D10 SINE Alu -1 116 13 1 814 549 0 0 0 chr5 30052624 30052685 -122484574 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 814 1194 49 0 0 chr5 30052859 30053001 -122484258 + B1_Mm SINE Alu 5 146 -1 1 814 255 286 0 135 chr5 30053019 30053108 -122484151 + B3A SINE B2 27 103 -95 1 814 478 260 51 73 chr5 30053168 30053305 -122483954 + B3 SINE B2 3 136 -80 1 814 3604 136 49 36 chr5 30053305 30053576 -122483683 + Lx4B LINE L1 6269 6542 -516 1 814 526 252 176 80 chr5 30053576 30053912 -122483347 + RLTR9A LTR ERVK 1 368 0 1 814 3604 136 49 36 chr5 30053912 30054257 -122483002 + Lx4B LINE L1 6543 6893 -165 1 814 793 239 55 94 chr5 30054260 30054422 -122482837 - RLTR41 LTR ERV1 0 446 293 1 814 1113 96 0 0 chr5 30054422 30054568 -122482691 - B1_Mus2 SINE Alu -1 146 1 1 814 793 239 55 94 chr5 30054568 30054659 -122482600 - RLTR41 LTR ERV1 -154 292 203 1 814 961 73 0 0 chr5 30054654 30054777 -122482482 + B1_Mus1 SINE Alu 26 148 0 1 814 248 0 0 30 chr5 30054790 30054823 -122482436 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1 814 1580 95 113 0 chr5 30054823 30055054 -122482205 - ORR1A2 LTR MaLR -61 266 10 1 814 1634 52 0 0 chr5 30055054 30055247 -122482012 - B2_Mm1t SINE B2 0 193 1 1 814 305 240 124 9 chr5 30055253 30055358 -122481901 + YREP_Mm Unknown Unknown 177 293 -1519 1 814 836 225 65 0 chr5 30055269 30055438 -122481821 - ID_B1 SINE B4 -20 204 25 1 814 727 179 56 21 chr5 30055464 30055607 -122481652 - B1_Mur4 SINE Alu 0 150 3 1 814 186 43 0 0 chr5 30055607 30055630 -122481629 + (TTCTC)n Simple_repeat Simple_repeat 4 26 0 1 814 609 83 0 0 chr5 30055656 30055740 -122481519 + (TC)n Simple_repeat Simple_repeat 2 85 0 1 814 227 241 240 33 chr5 30055741 30055755 -122481504 - B4A SINE B4 -46 246 202 1 814 415 216 20 10 chr5 30055755 30055853 -122481406 - PB1D10 SINE Alu -1 116 18 1 814 227 241 240 33 chr5 30055853 30055891 -122481368 - B4A SINE B4 -46 201 66 1 814 537 86 0 0 chr5 30055960 30056030 -122481229 + B2_Mm2 SINE B2 2 71 -124 2 814 252 0 0 0 chr5 30056277 30056305 -122480954 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 814 1133 112 0 30 chr5 30056305 30056471 -122480788 - B2_Mm2 SINE B2 -34 161 1 2 814 508 127 158 35 chr5 30056479 30056593 -122480666 + B1_Mus1 SINE Alu 23 150 0 2 814 1105 102 0 0 chr5 30056611 30056758 -122480501 + B1_Mus1 SINE Alu 1 147 -1 2 814 1112 79 0 0 chr5 30056787 30056927 -122480332 + B1_Mm SINE Alu 2 141 -6 2 814 360 0 0 0 chr5 30056928 30056968 -122480291 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 814 634 247 114 126 chr5 30056987 30057321 -122479938 - RMER5 LTR ERV1 -189 345 16 2 814 210 270 13 63 chr5 30057828 30057907 -122479352 + RSINE1 SINE B4 2 76 -89 2 814 270 0 0 0 chr5 30058034 30058064 -122479195 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 814 461 181 30 114 chr5 30058096 30058227 -122479032 + PB1D9 SINE Alu 1 120 0 2 814 484 163 19 75 chr5 30058274 30058340 -122478919 + PB1D9 SINE Alu 21 84 -36 2 814 1184 43 0 0 chr5 30058340 30058478 -122478781 + B1_Mm SINE Alu 1 138 -9 2 814 261 0 0 0 chr5 30058478 30058507 -122478752 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 814 484 163 19 75 chr5 30058507 30058545 -122478714 + PB1D9 SINE Alu 85 119 -1 2 814 285 296 42 92 chr5 30058578 30058697 -122478562 + PB1D7 SINE Alu 3 115 -5 2 814 270 226 71 61 chr5 30058700 30058799 -122478460 - YREP_Mm Unknown Unknown -1494 318 219 2 814 331 257 67 0 chr5 30058713 30058818 -122478441 + ID_B1 SINE B4 88 199 -25 2 814 531 0 0 0 chr5 30058823 30058882 -122478377 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 2 814 1090 29 73 0 chr5 30059194 30059331 -122477928 + B1_Mus1 SINE Alu 2 148 0 2 814 1186 68 0 0 chr5 30059714 30059860 -122477399 + B1_Mus2 SINE Alu 2 147 0 2 814 192 77 0 0 chr5 30059907 30059933 -122477326 + (A)n Simple_repeat Simple_repeat 1 26 0 2 814 308 356 0 71 chr5 30060207 30060334 -122476925 + PB1D7 SINE Alu 2 119 -1 2 814 228 57 36 54 chr5 30060334 30060390 -122476869 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 2 814 338 181 21 95 chr5 30060465 30060572 -122476687 - PB1D9 SINE Alu -5 115 20 2 814 1241 119 0 0 chr5 30060577 30060753 -122476506 + B2_Mm2 SINE B2 1 176 -19 2 814 621 233 23 8 chr5 30060872 30061002 -122476257 - B3A SINE B2 -66 132 1 2 814 1148 61 0 7 chr5 30061028 30061176 -122476083 - B1_Mus1 SINE Alu 0 148 2 2 814 362 117 117 0 chr5 30061945 30062022 -122475237 + B2_Mm2 SINE B2 103 188 -7 2 814 202 204 23 0 chr5 30062563 30062607 -122474652 + (CCG)n Simple_repeat Simple_repeat 3 47 0 2 814 207 0 0 0 chr5 30063993 30064016 -122473243 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 814 1032 71 29 0 chr5 30064016 30064149 -122473110 - B1_Mm SINE Alu -9 138 2 2 814 403 172 136 39 chr5 30064166 30064281 -122472978 - B1_Mus2 SINE Alu -21 127 2 2 814 601 168 114 8 chr5 30065129 30065261 -122471998 - B1_Mur2 SINE Alu -1 148 3 2 814 1136 96 0 0 chr5 30065327 30065473 -122471786 + B1_Mus2 SINE Alu 1 146 -1 2 814 216 0 0 0 chr5 30065478 30065502 -122471757 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2 814 255 133 0 0 chr5 30065898 30065943 -122471316 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 814 258 256 36 88 chr5 30065949 30066086 -122471173 - B4A SINE B4 0 292 163 2 814 314 213 61 61 chr5 30066292 30066407 -122470852 + PB1D9 SINE Alu 4 118 -2 2 814 225 205 256 0 chr5 30066530 30066608 -122470651 - RSINE1 SINE B4 -36 129 32 2 814 448 270 39 23 chr5 30066939 30067068 -122470191 - B1_Mur1 SINE Alu -14 135 5 2 814 433 279 88 7 chr5 30067098 30067235 -122470024 - B1_Mur2 SINE Alu 0 149 2 2 814 340 271 41 83 chr5 30067810 30067955 -122469304 + B3A SINE B2 25 163 -35 2 814 279 0 0 0 chr5 30068270 30068301 -122468958 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 814 22 0 0 0 chr5 30068585 30068607 -122468652 + AT_rich Low_complexity Low_complexity 1 22 0 2 814 1036 80 65 0 chr5 30068609 30068747 -122468512 - B1_Mus2 SINE Alu 0 147 1 2 814 750 263 67 5 chr5 30068756 30068951 -122468308 - B3 SINE B2 -9 207 1 2 814 566 186 26 26 chr5 30069337 30069453 -122467806 - B1_Mur4 SINE Alu -22 128 13 2 814 211 308 73 46 chr5 30069359 30069468 -122467791 - B4A SINE B4 -98 194 83 2 814 1087 43 28 7 chr5 30069868 30070010 -122467249 - B1_Mus2 SINE Alu -1 146 2 2 814 211 217 183 0 chr5 30070845 30070905 -122466354 - ID4_ SINE ID -11 72 2 2 814 594 191 87 8 chr5 30071376 30071503 -122465756 - B1_Mur4 SINE Alu -12 138 2 2 814 1176 94 82 0 chr5 30071727 30071898 -122465361 - B2_Mm1t SINE B2 -7 186 2 2 814 483 238 37 28 chr5 30071918 30072026 -122465233 - PB1D9 SINE Alu -8 112 4 2 814 189 0 0 0 chr5 30072139 30072160 -122465099 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2 814 198 143 0 0 chr5 30072190 30072225 -122465034 + (TTA)n Simple_repeat Simple_repeat 1 35 0 2 814 725 204 0 7 chr5 30072229 30072367 -122464892 - B1F2 SINE Alu -6 143 7 2 814 23 0 0 0 chr5 30072380 30072403 -122464856 + AT_rich Low_complexity Low_complexity 1 23 0 2 814 353 239 292 0 chr5 30072487 30072600 -122464659 + B1_Mus1 SINE Alu 2 147 -1 2 814 1302 88 5 54 chr5 30072606 30072810 -122464449 + B2_Mm2 SINE B2 2 195 0 2 814 183 329 0 12 chr5 30073302 30073382 -122463877 - L2 LINE L2 -944 2475 2397 2 814 1093 109 0 0 chr5 30073560 30073707 -122463552 + B1_Mus1 SINE Alu 2 148 0 2 814 211 125 0 24 chr5 30073708 30073749 -122463510 + (CAAAA)n Simple_repeat Simple_repeat 4 43 0 2 814 503 186 44 9 chr5 30074584 30074698 -122462561 - B1_Mur3 SINE Alu -23 126 9 2 814 643 291 71 0 chr5 30075048 30075230 -122462029 - B3 SINE B2 -6 210 16 2 814 275 65 22 0 chr5 30075474 30075520 -122461739 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 814 1228 14 0 0 chr5 30075520 30075658 -122461601 - B1_Mm SINE Alu -9 138 1 2 814 211 271 0 0 chr5 30075696 30075744 -122461515 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 814 536 205 15 69 chr5 30075994 30076125 -122461134 + B1_Mur4 SINE Alu 3 126 -24 2 814 608 232 230 88 chr5 30076169 30076500 -122460759 - MTE2a LTR MaLR 0 379 2 2 814 309 333 8 37 chr5 30077055 30077153 -122460106 - L1M5 LINE L1 -2947 3199 3106 2 814 1204 61 0 0 chr5 30077153 30077300 -122459959 - B1_Mus2 SINE Alu 0 147 1 2 814 309 333 8 37 chr5 30077300 30077335 -122459924 - L1M5 LINE L1 -3041 3105 3070 2 814 225 0 0 0 chr5 30077880 30077905 -122459354 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 814 783 93 7 80 chr5 30079069 30079220 -122458039 - B1_Mus1 SINE Alu -2 146 7 2 814 249 317 12 12 chr5 30079345 30079428 -122457831 + B1_Mur3 SINE Alu 4 86 -63 2 814 27 0 0 0 chr5 30079488 30079515 -122457744 + AT_rich Low_complexity Low_complexity 1 27 0 2 814 239 262 33 0 chr5 30079534 30079595 -122457664 + PB1D10 SINE Alu 50 112 -5 2 814 869 89 86 29 chr5 30081257 30081396 -122455863 - B1_Mus2 SINE Alu 0 147 1 2 814 272 245 0 0 chr5 30081671 30081724 -122455535 + RSINE1 SINE B4 14 66 -99 2 814 314 320 40 0 chr5 30082234 30082334 -122454925 + B1F1 SINE Alu 15 118 -31 2 814 198 91 0 0 chr5 30083045 30083078 -122454181 + (T)n Simple_repeat Simple_repeat 1 33 0 2 814 23 0 0 0 chr5 30085448 30085471 -122451788 + AT_rich Low_complexity Low_complexity 1 23 0 2 814 360 167 135 56 chr5 30085495 30085584 -122451675 - B3 SINE B2 -87 129 34 2 814 616 222 27 14 chr5 30085764 30085910 -122451349 - B1_Mur3 SINE Alu -1 148 1 2 814 811 180 28 21 chr5 30086532 30086726 -122450533 - B3 SINE B2 0 193 2 2 814 209 278 0 0 chr5 30087253 30087307 -122449952 + T-rich Low_complexity Low_complexity 3 56 0 2 814 590 242 13 94 chr5 30087391 30087541 -122449718 - B3 SINE B2 -25 168 30 2 814 266 244 23 58 chr5 30088023 30088110 -122449149 + RSINE1 SINE B4 16 99 -66 2 814 230 192 81 103 chr5 30088299 30088386 -122448873 - B1F1 SINE Alu -45 104 20 2 814 337 224 7 0 chr5 30088451 30088537 -122448722 - B1_Mus2 SINE Alu -25 95 7 2 814 708 125 92 14 chr5 30088715 30088888 -122448371 - B2_Mm2 SINE B2 -9 184 2 2 814 543 207 66 0 chr5 30089888 30090009 -122447250 - B3 SINE B2 -19 197 69 2 814 345 204 139 30 chr5 30090147 30090248 -122447011 - B1_Mm SINE Alu -35 112 1 2 814 382 276 130 76 chr5 30090282 30090466 -122446793 + B3A SINE B2 1 194 -4 2 814 572 167 120 8 chr5 30090511 30090644 -122446615 - B1_Mus1 SINE Alu 0 148 1 2 814 1282 116 11 0 chr5 30092209 30092399 -122444860 - B2_Mm1t SINE B2 0 193 2 2 814 28 0 0 0 chr5 30092736 30092764 -122444495 + AT_rich Low_complexity Low_complexity 1 28 0 2 814 277 250 0 0 chr5 30093912 30093964 -122443295 - ID4_ SINE ID -7 76 25 2 814 23 33 0 0 chr5 30095207 30095237 -122442022 + AT_rich Low_complexity Low_complexity 1 30 0 2 814 1171 48 0 26 chr5 30095450 30095601 -122441658 + B1_Mus1 SINE Alu 1 147 -1 2 814 352 266 48 18 chr5 30095721 30095841 -122441418 - B1_Mus2 SINE Alu 0 120 2 2 814 234 0 0 0 chr5 30095844 30095870 -122441389 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 814 364 155 28 0 chr5 30095870 30095941 -122441318 - B1_Mur3 SINE Alu -11 138 66 3 814 2122 179 122 13 chr5 30096195 30096671 -122440588 - RLTR11A LTR ERVK 0 528 1 3 814 198 0 0 0 chr5 30096895 30096917 -122440342 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 814 414 38 0 0 chr5 30097016 30097069 -122440190 - L1_Mus1 LINE L1 -16 6551 6499 3 814 319 141 111 101 chr5 30097345 30097451 -122439808 - B1_Mur2 SINE Alu -38 111 9 3 814 21 0 0 0 chr5 30097528 30097549 -122439710 + AT_rich Low_complexity Low_complexity 1 21 0 3 814 613 194 219 0 chr5 30097615 30097775 -122439484 - B3 SINE B2 -19 197 3 3 814 575 217 217 0 chr5 30097853 30098019 -122439240 - B3 SINE B2 -14 202 1 3 814 415 248 91 0 chr5 30098092 30098213 -122439046 - B3A SINE B2 -64 134 3 3 814 558 166 30 142 chr5 30098280 30098449 -122438810 + B1_Mur4 SINE Alu 1 150 0 3 814 265 242 116 0 chr5 30098564 30098659 -122438600 + MTE2a LTR MaLR 47 152 -227 3 814 407 203 140 5 chr5 30099095 30099207 -122438052 - B1_Mur4 SINE Alu -7 113 1 3 814 250 266 49 37 chr5 30099142 30099224 -122438035 - B4 SINE B4 -143 149 67 3 814 229 283 118 11 chr5 30099773 30099866 -122437393 - PB1D7 SINE Alu -12 108 6 3 814 227 214 0 0 chr5 30099925 30099967 -122437292 + ID4_ SINE ID 3 44 -39 3 814 801 105 97 7 chr5 30100786 30100930 -122436329 + B2_Mm2 SINE B2 31 187 -8 3 814 217 202 341 12 chr5 30100944 30101029 -122436230 + PB1D9 SINE Alu 2 114 -6 3 814 557 135 93 10 chr5 30101100 30101197 -122436062 + B3 SINE B2 1 105 -111 3 814 926 135 13 33 chr5 30101428 30101581 -122435678 - B1_Mur4 SINE Alu 0 150 1 3 814 224 260 0 0 chr5 30101663 30101713 -122435546 - B3 SINE B2 -136 80 31 3 814 930 174 58 45 chr5 30103190 30103413 -122433846 - URR1A DNA MER1_type 0 226 1 3 814 441 15 45 0 chr5 30103959 30104025 -122433234 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 814 422 269 85 52 chr5 30105236 30105389 -122431870 - RSINE1 SINE B4 0 165 8 3 814 243 182 0 0 chr5 30106076 30106099 -122431160 + T-rich Low_complexity Low_complexity 33 55 0 3 814 803 151 14 35 chr5 30106099 30106243 -122431016 - B1_Mur3 SINE Alu -7 142 2 3 814 243 182 0 0 chr5 30106243 30106274 -122430985 + T-rich Low_complexity Low_complexity 2 32 0 3 814 1275 27 0 0 chr5 30106274 30106421 -122430838 - B1_Mm SINE Alu 0 147 1 3 814 231 317 85 19 chr5 30106427 30106533 -122430726 - PB1D10 SINE Alu -1 116 4 3 814 344 206 208 42 chr5 30106625 30106721 -122430538 - B1_Mus1 SINE Alu -36 112 1 3 814 391 202 9 9 chr5 30107725 30107840 -122429419 + (CCCCAG)n Simple_repeat Simple_repeat 3 117 0 3 814 387 0 0 0 chr5 30110407 30110450 -122426809 + (CGTG)n Simple_repeat Simple_repeat 4 46 0 3 814 218 200 0 0 chr5 30111587 30111632 -122425627 + GA-rich Low_complexity Low_complexity 2 46 0 3 814 276 30 0 0 chr5 30111683 30111716 -122425543 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 814 606 253 25 19 chr5 30113023 30113184 -122424075 - RSINE1 SINE B4 -2 163 2 3 814 192 40 0 0 chr5 30113575 30113600 -122423659 + (CCCTAA)n Simple_repeat Simple_repeat 4 28 0 3 814 513 248 31 39 chr5 30114074 30114204 -122423055 + B1_Mur1 SINE Alu 8 136 -13 3 814 433 122 408 0 chr5 30115341 30115439 -122421820 + B1_Mur4 SINE Alu 1 138 -12 3 814 285 119 102 0 chr5 30115713 30115772 -122421487 + B1_Mus2 SINE Alu 83 147 0 3 814 1189 49 0 0 chr5 30115777 30115921 -122421338 + B1_Mus1 SINE Alu 1 144 -4 3 814 223 174 0 0 chr5 30115925 30115971 -122421288 + A-rich Low_complexity Low_complexity 1 46 0 3 814 1043 116 0 7 chr5 30115995 30116142 -122421117 - B1_Mus2 SINE Alu -1 146 1 3 814 679 211 146 0 chr5 30116168 30116339 -122420920 + B3 SINE B2 21 216 0 3 814 326 194 222 10 chr5 30116341 30116440 -122420819 + PB1D9 SINE Alu 1 120 0 3 814 473 71 0 14 chr5 30116443 30116514 -122420745 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 814 265 34 85 0 chr5 30116514 30116572 -122420687 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 814 333 0 0 0 chr5 30118155 30118192 -122419067 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 814 1222 21 0 0 chr5 30118256 30118397 -122418862 + B1_Mm SINE Alu 1 141 -6 3 814 608 203 8 61 chr5 30118744 30118875 -122418384 + B1_Mur4 SINE Alu 12 135 -15 3 814 216 0 0 0 chr5 30118879 30118903 -122418356 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 814 328 333 24 42 chr5 30119042 30119208 -122418051 - RSINE1 SINE B4 0 165 3 3 814 378 0 0 0 chr5 30119289 30119331 -122417928 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 814 443 48 16 0 chr5 30119331 30119393 -122417866 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 814 285 345 16 33 chr5 30119796 30120035 -122417224 + (CATA)n Simple_repeat Simple_repeat 1 235 0 3 814 1011 92 177 6 chr5 30120512 30120676 -122416583 - B2_Mm2 SINE B2 -3 192 1 3 814 228 35 0 0 chr5 30122115 30122144 -122415115 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 814 1280 101 6 6 chr5 30122147 30122326 -122414933 - B2_Mm1a SINE B2 -14 179 1 3 814 469 0 33 0 chr5 30122351 30122412 -122414847 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 814 1082 90 14 0 chr5 30122416 30122561 -122414698 - B1_Mus1 SINE Alu 0 148 2 3 814 762 179 36 0 chr5 30122723 30122863 -122414396 - B1_Mus2 SINE Alu 0 147 3 3 814 368 40 20 0 chr5 30122863 30122913 -122414346 + (TAA)n Simple_repeat Simple_repeat 1 51 0 3 814 558 170 60 0 chr5 30122916 30123016 -122414243 - B1_Mus2 SINE Alu -17 130 25 3 814 233 333 97 18 chr5 30122934 30123047 -122414212 - B4 SINE B4 -90 202 81 3 814 502 268 65 7 chr5 30123090 30123244 -122414015 - RSINE1 SINE B4 0 165 3 3 814 1812 212 174 32 chr5 30123404 30123508 -122413751 - RLTR20B1 LTR ERVK 0 563 470 3 814 351 0 0 0 chr5 30123508 30123547 -122413712 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 814 1812 212 174 32 chr5 30123547 30123935 -122413324 - RLTR20B1 LTR ERVK -94 469 3 3 814 1481 74 5 0 chr5 30124498 30124687 -122412572 - B2_Mm1a SINE B2 -3 190 1 3 814 902 157 0 35 chr5 30125352 30125524 -122411735 + MTB_Mm LTR MaLR 1 166 -241 3 814 245 29 0 29 chr5 30125600 30125635 -122411624 + (CCCCCA)n Simple_repeat Simple_repeat 6 39 0 3 814 2450 175 63 59 chr5 30126400 30127312 -122409947 - RLTR13D1 LTR ERVK 0 855 1 3 814 957 149 217 0 chr5 30127478 30127653 -122409606 + B3 SINE B2 4 216 0 3 814 851 215 30 35 chr5 30128955 30129153 -122408106 + B3A SINE B2 2 198 0 3 814 24 0 0 0 chr5 30129158 30129182 -122408077 + AT_rich Low_complexity Low_complexity 1 24 0 3 814 213 39 0 0 chr5 30129284 30129310 -122407949 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 814 333 0 0 0 chr5 30129315 30129352 -122407907 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 814 594 264 84 14 chr5 30129353 30129495 -122407764 - B3A SINE B2 -45 153 2 3 814 3492 98 95 62 chr5 30130007 30130723 -122406536 - RMER17A LTR ERVK -11 740 1 3 814 265 111 127 89 chr5 30131278 30131357 -122405902 - Lx4B LINE L1 -501 6557 6476 3 814 213 121 0 0 chr5 30131406 30131439 -122405820 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 3 814 263 148 0 90 chr5 30131439 30131467 -122405792 - Lx4B LINE L1 -647 6411 6387 3 814 597 64 0 0 chr5 30131467 30131545 -122405714 + (TTTC)n Simple_repeat Simple_repeat 1 78 0 3 814 1110 51 131 12 chr5 30131545 30131705 -122405554 - B2_Mm2 SINE B2 -16 179 1 3 814 263 148 0 90 chr5 30131705 30131742 -122405517 - Lx4B LINE L1 -672 6386 6352 3 814 1218 54 0 0 chr5 30131785 30131932 -122405327 - B1_Mm SINE Alu 0 147 1 3 814 267 250 167 0 chr5 30131932 30132004 -122405255 + B4A SINE B4 203 286 -6 3 814 965 191 29 48 chr5 30132053 30132262 -122404997 + B3 SINE B2 1 205 -11 3 814 28 29 0 0 chr5 30132267 30132302 -122404957 + AT_rich Low_complexity Low_complexity 1 35 0 3 814 553 294 73 34 chr5 30132308 30132622 -122404637 + L1M2 LINE L1 5224 5554 -614 3 814 1251 113 11 0 chr5 30132637 30132814 -122404445 + B2_Mm1t SINE B2 1 179 -14 3 814 214 216 49 35 chr5 30134860 30135004 -122402255 + (CTCA)n Simple_repeat Simple_repeat 4 149 0 3 814 21 57 0 0 chr5 30135404 30135439 -122401820 + AT_rich Low_complexity Low_complexity 1 35 0 3 814 2935 43 0 3 chr5 30135838 30136185 -122401074 - ORR1A1 LTR MaLR 0 346 1 3 814 803 173 20 15 chr5 30136586 30136768 -122400491 - B3 SINE B2 -9 186 2 3 814 336 289 40 20 chr5 30137001 30137100 -122400159 - B4 SINE B4 -5 287 187 3 814 3059 159 70 154 chr5 30137950 30138922 -122398337 - RLTR13D6 LTR ERVK -12 890 1 3 814 465 103 0 0 chr5 30139442 30139510 -122397749 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 814 313 273 13 0 chr5 30139510 30139587 -122397672 + LTR41 LTR ERVL 89 166 -602 3 814 254 179 0 18 chr5 30139644 30139701 -122397558 + ORR1B2 LTR MaLR 284 339 -28 3 814 2242 122 3 0 chr5 30139701 30140029 -122397230 - L1_Mus1 LINE L1 -1023 4860 4532 3 814 7054 103 12 10 chr5 30140020 30140469 -122396790 + L1_Mus1 LINE L1 4873 5317 -566 3 814 4434 61 5 16 chr5 30140469 30141039 -122396220 - LTRIS2 LTR ERV1 0 564 1 3 814 7722 66 13 16 chr5 30141039 30142293 -122394966 + L1_Mus1 LINE L1 5318 6567 0 3 814 345 242 0 0 chr5 30143054 30143145 -122394114 + (CA)n Simple_repeat Simple_repeat 2 92 0 3 814 365 105 0 0 chr5 30143166 30143223 -122394036 + HAL1-3A_ME LINE L1 1976 2032 -826 3 814 180 0 0 0 chr5 30143783 30143803 -122393456 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 814 795 90 191 43 chr5 30143807 30143969 -122393290 - B2_Mm2 SINE B2 -5 190 5 4 814 328 92 30 15 chr5 30144270 30144336 -122392923 + (GGGTG)n Simple_repeat Simple_repeat 1 67 0 4 814 24 32 0 0 chr5 30144629 30144660 -122392599 + AT_rich Low_complexity Low_complexity 1 31 0 4 814 896 213 64 25 chr5 30144660 30144862 -122392397 - B3 SINE B2 -6 210 1 4 814 342 253 353 25 chr5 30144932 30145222 -122392037 - MLT1B LTR MaLR -3 387 4 4 814 721 214 208 0 chr5 30145241 30145414 -122391845 + B3 SINE B2 2 210 -6 4 814 876 224 50 44 chr5 30145726 30146014 -122391245 + ORR1D1 LTR MaLR 26 343 -16 4 814 207 114 0 0 chr5 30146148 30146183 -122391076 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 814 232 283 32 13 chr5 30146196 30146350 -122390909 + (CAGA)n Simple_repeat Simple_repeat 2 158 0 4 814 234 325 32 78 chr5 30146393 30146449 -122390810 + Zaphod2 DNA Tip100 1229 1276 -2248 4 101 1106 82 7 0 chr5 30146449 30146595 -122390664 - B1_Mus2 SINE Alu 0 147 1 4 815 234 325 32 78 chr5 30146595 30146755 -122390504 + Zaphod2 DNA Tip100 1277 1434 -2090 4 815 314 225 14 0 chr5 30146767 30146838 -122390421 + ID4 SINE ID 6 77 -6 4 815 387 219 254 25 chr5 30146993 30147190 -122390069 - Tigger7 DNA MER2_type 0 2491 2250 4 815 551 229 178 0 chr5 30147197 30147354 -122389905 + B3 SINE B2 3 187 -29 4 815 21 57 0 0 chr5 30147354 30147389 -122389870 + AT_rich Low_complexity Low_complexity 1 35 0 4 815 4666 57 17 3 chr5 30147963 30148548 -122388711 + L1Md_F2 LINE L1 5987 6579 -3 4 815 183 100 0 0 chr5 30148590 30148620 -122388639 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 815 396 0 0 0 chr5 30148621 30148665 -122388594 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 815 318 270 82 36 chr5 30148735 30148931 -122388328 + Zaphod2 DNA Tip100 2789 2993 -531 4 815 494 164 8 0 chr5 30148931 30149053 -122388206 + (TCTA)n Simple_repeat Simple_repeat 1 123 0 4 815 594 230 59 0 chr5 30149054 30149189 -122388070 - B1_Mur1 SINE Alu -2 147 5 4 815 251 239 0 107 chr5 30149256 30149331 -122387928 + PB1D10 SINE Alu 45 111 -6 4 815 272 291 59 133 chr5 30149331 30149819 -122387440 + Zaphod2 DNA Tip100 2979 3430 -94 4 815 261 0 0 0 chr5 30149821 30149850 -122387409 + (T)n Simple_repeat Simple_repeat 1 29 0 4 815 1226 48 0 0 chr5 30149850 30149997 -122387262 - B1_Mm SINE Alu 0 147 1 4 815 491 236 90 7 chr5 30150060 30150205 -122387054 + RSINE1 SINE B4 2 158 -7 4 815 666 246 111 15 chr5 30150534 30150732 -122386527 + RMER1B Other Other 809 1025 -41 4 815 302 253 278 70 chr5 30150749 30150807 -122386452 + B4 SINE B4 1 225 -66 4 815 750 164 16 0 chr5 30150807 30150935 -122386324 + B1_Mur3 SINE Alu 20 149 0 4 815 272 48 0 23 chr5 30150948 30150991 -122386268 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 4 815 327 275 0 12 chr5 30151070 30151151 -122386108 + B4A SINE B4 186 265 -27 4 815 353 253 12 0 chr5 30151316 30151399 -122385860 - MER5A DNA MER1_type -98 91 8 4 815 191 189 0 0 chr5 30151400 30151437 -122385822 - MER5A DNA MER1_type -152 37 1 4 815 287 252 183 8 chr5 30152153 30152273 -122384986 + MER33 DNA MER1_type 107 247 -77 4 815 207 0 0 0 chr5 30152351 30152374 -122384885 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 815 1048 218 236 19 chr5 30152411 30152858 -122384401 + MT2A LTR ERVL 47 496 -37 4 815 1038 162 142 0 chr5 30152938 30153135 -122384124 + URR1A DNA MER1_type 2 226 0 4 815 523 214 0 0 chr5 30153162 30153251 -122384008 - B1F SINE Alu -60 89 1 4 815 241 264 71 26 chr5 30153830 30153943 -122383316 + MER5A DNA MER1_type 72 189 0 4 815 2520 99 41 15 chr5 30154048 30154438 -122382821 - L1_Mus3 LINE L1 -512 5371 4972 4 815 8084 80 5 1 chr5 30154436 30155705 -122381554 + L1_Mus3 LINE L1 5363 6636 -2 4 815 7766 104 43 1 chr5 30156151 30157270 -122379989 - Lx2B LINE L1 -7 6993 5828 4 815 1146 90 11 6 chr5 30157273 30157452 -122379807 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 815 582 15 0 0 chr5 30157452 30157519 -122379740 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 4 815 207 0 0 0 chr5 30157913 30157936 -122379323 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 815 8762 144 20 4 chr5 30159953 30161373 -122375886 - L1_Mur2 LINE L1 -39 5838 4396 4 815 11530 173 75 94 chr5 30161359 30161936 -122375323 - L1VL4 LINE L1 -2321 3825 3293 4 815 1146 76 14 0 chr5 30161936 30162081 -122375178 - B1_Mus1 SINE Alu 0 148 2 4 815 11530 120 66 102 chr5 30162081 30162326 -122374933 - L1VL4 LINE L1 -622 3292 3041 4 815 471 35 0 0 chr5 30162326 30162383 -122374876 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 4 815 353 22 22 0 chr5 30162383 30162428 -122374831 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 4 815 1301 100 0 16 chr5 30162433 30162616 -122374643 - B2_Mm2 SINE B2 -14 181 2 4 815 11530 137 50 94 chr5 30162616 30163813 -122373446 - L1VL4 LINE L1 -878 3036 1825 4 815 629 58 120 37 chr5 30163813 30163921 -122373338 - B1_Mus1 SINE Alu 0 148 32 4 815 11530 137 50 94 chr5 30163921 30165139 -122372120 - L1VL4 LINE L1 -878 1824 589 4 815 23 0 0 0 chr5 30165235 30165258 -122372001 + AT_rich Low_complexity Low_complexity 1 23 0 4 815 255 170 0 0 chr5 30165311 30165358 -122371901 + (CACG)n Simple_repeat Simple_repeat 4 50 0 4 815 2347 154 66 142 chr5 30165386 30165962 -122371297 - RLTR18 LTR ERVK -5 611 71 4 815 1035 89 0 0 chr5 30165962 30166097 -122371162 - B1_Mus1 SINE Alu -11 137 3 4 815 2347 154 66 142 chr5 30166097 30166154 -122371105 - RLTR18 LTR ERVK -546 70 26 4 815 403 274 38 0 chr5 30166153 30166259 -122371000 - B3 SINE B2 -60 156 47 4 815 1632 297 53 39 chr5 30166484 30167160 -122370099 - Lx9 LINE L1 -184 7460 6775 4 815 656 169 8 39 chr5 30167170 30167299 -122369960 - B1_Mur3 SINE Alu -6 143 19 4 815 618 311 33 16 chr5 30167314 30167497 -122369762 - ID_B1 SINE B4 -38 186 1 4 815 423 0 0 0 chr5 30168687 30168734 -122368525 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 815 451 198 11 11 chr5 30169747 30169839 -122367420 - PB1D10 SINE Alu -3 114 23 4 815 271 320 16 49 chr5 30169839 30170023 -122367236 + L2a LINE L2 3249 3426 0 4 815 289 233 75 43 chr5 30170613 30170707 -122366552 + RMER30 DNA MER1_type 5 101 -101 4 815 783 153 81 0 chr5 30170709 30170833 -122366426 + B1_Mus1 SINE Alu 3 136 -12 4 815 516 146 329 53 chr5 30170834 30170986 -122366273 + B2_Mm2 SINE B2 2 195 0 4 815 268 277 12 24 chr5 30171061 30171146 -122366113 + RMER30 DNA MER1_type 119 202 0 4 815 315 0 0 0 chr5 30171956 30171991 -122365268 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 815 408 122 0 0 chr5 30171993 30172075 -122365184 + (GA)n Simple_repeat Simple_repeat 2 83 0 4 815 809 158 120 0 chr5 30172314 30172447 -122364812 + B1_Mur3 SINE Alu 1 149 0 4 815 189 0 0 0 chr5 30172484 30172505 -122364754 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 815 369 0 0 0 chr5 30172608 30172649 -122364610 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 815 520 326 18 47 chr5 30172846 30173120 -122364139 + B4A SINE B4 27 292 0 4 815 205 196 21 21 chr5 30173123 30173170 -122364089 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 815 938 139 197 16 chr5 30173467 30173650 -122363609 + B3 SINE B2 1 216 0 4 815 1218 61 0 0 chr5 30173658 30173806 -122363453 + B1_Mus1 SINE Alu 1 148 0 4 815 498 301 30 81 chr5 30174386 30174621 -122362638 - MLT1B LTR MaLR -29 361 139 4 815 1384 85 16 0 chr5 30175525 30175714 -122361545 + B2_Mm1a SINE B2 2 193 0 4 815 6803 65 5 22 chr5 30175982 30176900 -122360359 + L1_Mus2 LINE L1 5655 6560 -6 4 815 788 238 82 5 chr5 30176931 30177125 -122360134 + B3 SINE B2 1 209 -7 4 815 249 231 15 0 chr5 30177135 30177200 -122360059 + L1M4 LINE L1 3032 3097 -3049 4 815 619 279 60 36 chr5 30177779 30178143 -122359116 - Charlie1a DNA MER1_type -6 1449 1077 4 815 724 90 72 0 chr5 30178330 30178441 -122358818 - B1_Mus2 SINE Alu -7 140 22 4 815 380 268 70 16 chr5 30178451 30178580 -122358679 + B4 SINE B4 4 139 -153 4 815 290 98 0 19 chr5 30178651 30178703 -122358556 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 815 307 182 0 0 chr5 30178779 30178834 -122358425 + B1_Mur2 SINE Alu 58 112 -37 4 815 228 35 0 0 chr5 30178849 30178878 -122358381 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 4 815 21 0 0 0 chr5 30180678 30180699 -122356560 + AT_rich Low_complexity Low_complexity 1 21 0 4 815 328 321 42 21 chr5 30181597 30181740 -122355519 - MLT1H2 LTR MaLR -8 481 336 4 815 26 0 0 0 chr5 30183480 30183506 -122353753 + AT_rich Low_complexity Low_complexity 1 26 0 4 815 1397 187 83 3 chr5 30183509 30183614 -122353645 - RMER1B Other Other -5 1061 949 4 815 405 0 0 0 chr5 30183614 30183659 -122353600 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 815 1397 187 83 3 chr5 30183659 30183853 -122353406 - RMER1B Other Other -118 948 739 4 815 263 322 11 11 chr5 30183921 30184012 -122353247 - PB1D10 SINE Alu -7 110 20 4 815 608 242 25 42 chr5 30184104 30184127 -122353132 - L1M5 LINE L1 -958 5486 5466 4 815 4096 85 4 0 chr5 30184127 30184667 -122352592 - L1_Mus2 LINE L1 0 6566 6025 4 815 14073 85 11 1 chr5 30184667 30186565 -122350694 - L1_Mm LINE L1 -447 5436 3519 4 815 560 308 143 82 chr5 30186905 30187271 -122349988 + MER21B LTR ERV1 87 466 -397 4 815 590 237 57 43 chr5 30187271 30187412 -122349847 - B1_Mur2 SINE Alu -5 144 2 4 815 560 308 143 82 chr5 30187412 30187639 -122349620 + MER21B LTR ERV1 467 716 -147 4 815 3402 40 2 0 chr5 30188482 30188877 -122348382 - MTA_Mm LTR MaLR 0 396 1 4 815 429 95 0 0 chr5 30189002 30189065 -122348194 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 815 389 269 182 9 chr5 30189093 30189323 -122347936 - B4A SINE B4 -22 270 1 4 815 459 320 64 0 chr5 30189481 30189653 -122347606 - MER5A DNA MER1_type -6 183 1 4 815 258 262 0 16 chr5 30189819 30189881 -122347378 + CT-rich Low_complexity Low_complexity 1 61 0 4 815 581 0 14 0 chr5 30190365 30190434 -122346825 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 4 815 255 61 0 0 chr5 30192312 30192345 -122344914 + (T)n Simple_repeat Simple_repeat 1 33 0 5 815 837 146 0 0 chr5 30192345 30192496 -122344763 - B1_Mur2 SINE Alu 0 149 9 5 815 341 296 0 0 chr5 30192495 30192576 -122344683 - B1F1 SINE Alu -36 113 33 5 815 12668 107 5 19 chr5 30193610 30194012 -122343247 + L1_Mus2 LINE L1 4040 4436 -1447 5 815 1143 81 0 13 chr5 30194012 30194162 -122343097 + B1_Mus1 SINE Alu 1 148 0 5 815 12668 107 5 19 chr5 30194162 30194181 -122343078 + L1_Mus2 LINE L1 4437 4437 -1446 5 815 378 46 46 0 chr5 30194181 30194246 -122343013 + (CAA)n Simple_repeat Simple_repeat 2 69 0 5 815 12668 128 20 30 chr5 30194246 30196820 -122340439 + L1_Mus2 LINE L1 4437 6992 -5 5 815 213 39 0 0 chr5 30196820 30196846 -122340413 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 5 815 252 0 0 0 chr5 30196867 30196895 -122340364 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 5 815 201 94 0 0 chr5 30196900 30196932 -122340327 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 815 276 340 66 70 chr5 30197132 30197404 -122339855 - ORR1E LTR MaLR -7 352 82 5 815 737 249 9 62 chr5 30198615 30198842 -122338417 + B3 SINE B2 2 216 0 5 815 299 261 28 96 chr5 30198982 30199160 -122338099 - RMER15 LTR ERVL -73 502 337 5 815 353 322 62 29 chr5 30199329 30199537 -122337722 - MER58B DNA MER1_type -2 339 125 5 815 577 191 104 22 chr5 30199540 30199674 -122337585 + B1_Mm SINE Alu 3 147 0 5 815 795 116 0 0 chr5 30199766 30199887 -122337372 + (GA)n Simple_repeat Simple_repeat 2 122 0 5 815 258 167 66 16 chr5 30199986 30200047 -122337212 - Lx9 LINE L1 -281 7363 7300 5 815 294 179 0 0 chr5 30200083 30200139 -122337120 + T-rich Low_complexity Low_complexity 1 56 0 5 815 1002 268 108 15 chr5 30200455 30200789 -122336470 + ORR1D2 LTR MaLR 6 370 0 5 815 411 242 40 0 chr5 30200824 30200923 -122336336 + PB1D10 SINE Alu 7 109 -8 5 815 1525 200 138 40 chr5 30201082 30201595 -122335664 + Lx9 LINE L1 5331 5960 -1684 5 815 181 310 91 11 chr5 30202283 30202371 -122334888 - L2 LINE L2 -540 2879 2785 5 815 361 313 67 90 chr5 30202458 30202770 -122334489 - RMER10A LTR ERVL -120 322 18 5 815 186 71 0 0 chr5 30202800 30202828 -122334431 + (TATG)n Simple_repeat Simple_repeat 2 29 0 5 815 10037 69 1 3 chr5 30202841 30204772 -122332487 - L1_Mus1 LINE L1 -1 6566 4640 5 815 838 119 12 59 chr5 30205048 30205217 -122332042 - L1Md_F2 LINE L1 -2 6580 6420 5 815 192 200 0 0 chr5 30205636 30205681 -122331578 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 815 1195 61 0 0 chr5 30207516 30207663 -122329596 + B1_Mus1 SINE Alu 2 148 0 5 815 294 29 0 0 chr5 30207682 30207717 -122329542 + (A)n Simple_repeat Simple_repeat 1 35 0 5 815 373 240 45 55 chr5 30208079 30208189 -122329070 - B1F2 SINE Alu -1 119 11 5 815 2050 53 4 19 chr5 30208266 30208534 -122328725 - L1_Mus2 LINE L1 0 6566 6303 5 815 1356 194 117 35 chr5 30208567 30208909 -122328350 + ORR1D1 LTR MaLR 1 370 -4 5 815 409 278 43 86 chr5 30209373 30209605 -122327654 - RMER12 LTR ERVK 0 1322 1101 5 815 227 204 19 0 chr5 30209776 30209830 -122327429 + G-rich Low_complexity Low_complexity 1 55 0 5 815 5411 64 46 1 chr5 30209906 30210688 -122326571 - RLTR22_Mus LTR ERVK -991 817 1 5 815 182 277 15 30 chr5 30210983 30211050 -122326209 - L4 LINE RTE -275 1754 1689 5 815 247 306 78 59 chr5 30211444 30211663 -122325596 + MER33 DNA MER1_type 45 267 -57 5 815 337 100 0 62 chr5 30212096 30212151 -122325108 + polypyrimidine Low_complexity Low_complexity 12 63 0 5 815 3409 38 2 0 chr5 30212151 30212546 -122324713 + MTA_Mm LTR MaLR 1 396 0 5 815 783 139 23 23 chr5 30212554 30212731 -122324528 + C-rich Low_complexity Low_complexity 4 180 0 5 815 1499 160 150 0 chr5 30212753 30213046 -122324213 - MTC LTR MaLR -52 369 33 5 815 22 35 0 0 chr5 30213231 30213260 -122323999 + AT_rich Low_complexity Low_complexity 1 29 0 5 815 306 342 53 27 chr5 30214923 30215073 -122322186 - LTR16E2 LTR ERVL -199 369 216 5 815 525 16 0 0 chr5 30215184 30215246 -122322013 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 815 564 15 0 0 chr5 30215246 30215310 -122321949 + (GA)n Simple_repeat Simple_repeat 1 65 0 5 815 818 246 9 55 chr5 30215374 30215593 -122321666 - B4 SINE B4 -73 219 11 5 815 385 273 35 77 chr5 30215641 30215668 -122321591 - B1F2 SINE Alu -11 138 3 5 815 502 217 130 0 chr5 30215668 30215783 -122321476 - ID_B1 SINE B4 -11 213 84 5 815 259 338 0 13 chr5 30215853 30215931 -122321328 - ID4 SINE ID 0 83 7 5 815 573 15 0 0 chr5 30216403 30216469 -122320790 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 815 250 300 0 14 chr5 30216496 30216567 -122320692 - B4A SINE B4 0 292 223 5 815 1529 145 141 3 chr5 30216591 30216887 -122320372 + MTC LTR MaLR 5 341 -80 5 815 1384 161 77 46 chr5 30216887 30216946 -122320313 + ORR1B1 LTR MaLR 1 95 -299 5 815 2082 53 0 22 chr5 30216946 30217214 -122320045 + L1_Mus1 LINE L1 6306 6567 0 5 815 1384 179 33 145 chr5 30217214 30217555 -122319704 + ORR1B1 LTR MaLR 96 390 -4 5 815 837 270 66 35 chr5 30217555 30217950 -122319309 + Lx9 LINE L1 7237 7643 -1 5 815 566 176 15 72 chr5 30218116 30218277 -122318982 - B4A SINE B4 -42 250 96 5 815 207 0 0 0 chr5 30218338 30218361 -122318898 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 5 815 221 340 187 36 chr5 30218370 30218760 -122318499 + L2 LINE L2 2120 2568 -851 5 815 190 263 94 10 chr5 30220227 30220323 -122316936 + L2 LINE L2 2759 2862 -557 5 815 213 39 0 0 chr5 30220761 30220787 -122316472 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 5 815 982 98 14 20 chr5 30220787 30220933 -122316326 - B1_Mur3 SINE Alu 0 149 5 5 815 218 182 0 0 chr5 30221064 30221108 -122316151 + T-rich Low_complexity Low_complexity 2 45 0 5 815 231 36 0 0 chr5 30221581 30221609 -122315650 + (T)n Simple_repeat Simple_repeat 1 28 0 5 815 462 128 0 0 chr5 30221846 30221940 -122315319 + (GA)n Simple_repeat Simple_repeat 2 95 0 5 815 743 207 7 15 chr5 30222663 30222800 -122314459 + ID_B1 SINE B4 86 221 -3 5 815 229 214 18 0 chr5 30222800 30222856 -122314403 + (CATA)n Simple_repeat Simple_repeat 3 59 0 5 815 217 196 22 0 chr5 30223249 30223295 -122313964 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 815 858 150 64 7 chr5 30223358 30223499 -122313760 + B1_Mur3 SINE Alu 1 149 0 5 815 691 323 173 40 chr5 30224175 30224461 -122312798 + L1MEg2 LINE L1 208 494 -5958 5 815 3812 59 4 4 chr5 30224461 30224923 -122312336 - L1_Mus1 LINE L1 0 6567 6106 5 815 691 323 173 40 chr5 30224923 30225242 -122312017 + L1MEg2 LINE L1 495 894 -5558 5 815 293 195 95 24 chr5 30225586 30225670 -122311589 + MTD LTR MaLR 272 361 -58 5 815 322 286 156 21 chr5 30225681 30225867 -122311392 + L1MEg2 LINE L1 2771 2981 -4569 5 815 232 316 94 33 chr5 30225872 30226052 -122311207 + ORR1E LTR MaLR 5 195 -164 5 815 3908 146 50 10 chr5 30226198 30226910 -122310349 - RMER1B Other Other 0 1066 235 5 815 1075 204 81 7 chr5 30226944 30227215 -122310044 - Lx4B LINE L1 -8 7050 6760 5 815 283 242 0 15 chr5 30227638 30227700 -122309559 - MER47B DNA MER2_type -1 417 357 5 815 819 294 76 44 chr5 30227700 30228042 -122309217 + ORR1E LTR MaLR 1 353 -6 5 815 340 328 75 27 chr5 30228049 30228308 -122308951 - MER47B DNA MER2_type -66 352 1 5 815 384 145 0 16 chr5 30228334 30228397 -122308862 - MERVL_2A-int LTR ERVL -2494 3267 3206 5 815 585 94 0 0 chr5 30229228 30229313 -122307946 + (GA)n Simple_repeat Simple_repeat 2 86 0 5 815 1178 97 0 6 chr5 30229313 30229489 -122307770 + (GGAGA)n Simple_repeat Simple_repeat 2 176 0 5 815 383 188 36 54 chr5 30229548 30229687 -122307572 + ORR1A1 LTR MaLR 2 139 -207 5 815 11809 91 20 1 chr5 30229688 30231251 -122306008 + MERVL-int LTR ERVL 2089 3682 -1803 5 815 10421 127 66 48 chr5 30231251 30231491 -122305768 + ORR1A1-int LTR MaLR 1 159 -1804 5 815 2905 51 0 0 chr5 30231491 30231825 -122305434 - L1Md_T LINE L1 0 6582 6249 5 815 10421 127 66 48 chr5 30231825 30233513 -122303746 + ORR1A1-int LTR MaLR 160 1963 0 5 815 577 131 0 0 chr5 30233513 30233612 -122303647 + ORR1A1 LTR MaLR 1 99 -247 5 815 730 193 66 7 chr5 30233880 30234016 -122303243 - B1_Mur2 SINE Alu -5 144 1 5 815 7582 88 4 1 chr5 30234029 30235667 -122301592 - L1_Mus1 LINE L1 0 6567 4923 5 815 234 0 0 0 chr5 30235693 30235719 -122301540 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 815 576 143 0 0 chr5 30236044 30236142 -122301117 + (TCC)n Simple_repeat Simple_repeat 3 100 0 5 815 459 305 14 34 chr5 30236335 30236481 -122300778 + RSINE1 SINE B4 4 146 -19 5 815 267 31 0 0 chr5 30236516 30236548 -122300711 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 5 815 3300 98 0 36 chr5 30236565 30237040 -122300219 - L1_Mm LINE L1 -946 4937 4480 5 815 20945 120 11 37 chr5 30237297 30241384 -122295875 + L1Md_F LINE L1 217 4234 -1649 5 815 4427 156 34 19 chr5 30241383 30242244 -122295015 - L1_Mur3 LINE L1 -2611 3269 2396 5 815 256 217 0 0 chr5 30243432 30243478 -122293781 - MMERVK10C-int LTR ERVK -978 6603 6558 5 815 520 187 8 8 chr5 30243808 30243932 -122293327 + (TA)n Simple_repeat Simple_repeat 2 125 0 5 815 5876 151 68 20 chr5 30243933 30244107 -122293152 - L1_Mur3 LINE L1 -3498 2382 2193 5 815 220 27 54 0 chr5 30244107 30244144 -122293115 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 815 1668 17 0 6 chr5 30244144 30244323 -122292936 - B2_Mm1t SINE B2 -14 179 2 5 815 5876 161 58 22 chr5 30244323 30246107 -122291152 - L1_Mur3 LINE L1 -3688 2192 347 5 815 240 316 100 29 chr5 30246454 30246594 -122290665 - MLT2C2 LTR ERVL -261 203 54 5 815 314 207 360 0 chr5 30246657 30246768 -122290491 - MLT1E1 LTR MaLR -503 151 1 5 815 1247 62 0 7 chr5 30247262 30247409 -122289850 - B1_Mus1 SINE Alu 0 148 3 5 815 3907 66 98 19 chr5 30247453 30247976 -122289283 + LTRIS2 LTR ERV1 1 564 0 5 815 693 0 0 0 chr5 30248094 30248171 -122289088 + (TTC)n Simple_repeat Simple_repeat 2 78 0 5 815 1470 204 50 23 chr5 30248171 30248555 -122288704 - RMER16 LTR ERVK -85 448 21 5 815 5862 75 3 11 chr5 30248614 30249374 -122287885 - RMER16-int LTR ERVK 0 5406 4653 5 815 1172 76 14 0 chr5 30249599 30249743 -122287516 + B1_Mm SINE Alu 1 146 -1 5 815 260 83 0 20 chr5 30249744 30249793 -122287466 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 6 815 21 0 0 0 chr5 30250258 30250279 -122286980 + AT_rich Low_complexity Low_complexity 1 21 0 6 815 189 0 0 0 chr5 30250825 30250846 -122286413 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 815 568 333 69 0 chr5 30251229 30251433 -122285826 - MER20 DNA MER1_type 0 219 2 6 815 536 344 17 0 chr5 30251928 30252108 -122285151 + MIR3 SINE MIR 23 205 -3 6 815 496 263 81 25 chr5 30252416 30252576 -122284683 + RLTR9E LTR ERVK 239 407 -2 6 815 719 256 155 83 chr5 30252863 30253199 -122284060 + MTEa LTR MaLR 20 379 0 6 815 386 309 24 20 chr5 30253286 30253414 -122283845 - MLT1C LTR MaLR -3 464 245 6 815 234 310 44 94 chr5 30253461 30253621 -122283638 - MLT1C LTR MaLR -252 215 64 6 815 474 108 0 0 chr5 30253854 30253928 -122283331 + (TATG)n Simple_repeat Simple_repeat 2 75 0 6 815 2129 271 91 36 chr5 30254599 30255364 -122281895 - L1MA9 LINE L1 -21 6993 6185 6 815 1394 29 103 11 chr5 30255364 30255538 -122281721 - B2_Mm2 SINE B2 -5 190 1 6 815 2129 277 124 39 chr5 30255538 30255995 -122281264 - L1MA9 LINE L1 -830 6184 5685 6 815 611 353 0 0 chr5 30255997 30256147 -122281112 - RSINE1 SINE B4 -13 152 3 6 815 279 262 9 19 chr5 30256147 30256252 -122281007 - L1MA9 LINE L1 -1101 5741 5638 6 815 1282 48 0 0 chr5 30256404 30256549 -122280710 + B1_Mus2 SINE Alu 3 147 0 6 815 237 159 0 0 chr5 30256549 30256593 -122280666 + A-rich Low_complexity Low_complexity 1 44 0 6 815 2395 50 0 4 chr5 30256665 30256945 -122280314 - L1_Mus1 LINE L1 0 6567 6289 6 815 13576 96 17 63 chr5 30256984 30260046 -122277213 - L1VL2 LINE L1 -631 2984 65 6 815 229 282 27 40 chr5 30260037 30260111 -122277148 + Lx8 LINE L1 7212 7284 -189 6 815 347 261 33 22 chr5 30260290 30260380 -122276879 - B1F SINE Alu -52 97 7 6 815 486 293 114 13 chr5 30260519 30260747 -122276512 - L1MA9 LINE L1 -4260 2589 2339 6 815 583 238 0 0 chr5 30260753 30260873 -122276386 + B1_Mur2 SINE Alu 19 138 -11 6 815 342 0 0 0 chr5 30260873 30260911 -122276348 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 6 815 477 250 71 9 chr5 30261079 30261192 -122276067 + PB1D9 SINE Alu 1 120 0 6 815 232 252 85 115 chr5 30262871 30263001 -122274258 + RLTR41 LTR ERV1 251 376 -70 6 815 293 48 15 75 chr5 30263136 30263203 -122274056 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 6 815 232 365 47 0 chr5 30263586 30263671 -122273588 + RSINE1 SINE B4 75 163 -2 6 815 23 0 0 0 chr5 30263728 30263751 -122273508 + AT_rich Low_complexity Low_complexity 1 23 0 6 815 512 236 19 9 chr5 30263751 30263858 -122273401 + PB1D10 SINE Alu 1 108 -9 6 815 1365 112 11 0 chr5 30263867 30264055 -122273204 + B2_Mm1t SINE B2 1 190 -3 6 815 1080 68 0 8 chr5 30264672 30264806 -122272453 + B1_Mm SINE Alu 3 135 -12 6 815 396 0 0 0 chr5 30264807 30264851 -122272408 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 815 278 316 93 22 chr5 30264867 30265006 -122272253 - MER96 DNA hAT -24 151 3 6 815 233 331 91 49 chr5 30265358 30265501 -122271758 + LTR16A LTR ERVL 107 255 -196 6 815 371 221 13 13 chr5 30266116 30266194 -122271065 - PB1D10 SINE Alu -6 111 34 6 815 259 266 12 25 chr5 30266524 30266605 -122270654 + L1MA6 LINE L1 6211 6290 -10 6 815 955 181 40 58 chr5 30266785 30267008 -122270251 - ORR1D1 LTR MaLR 0 374 156 6 815 636 152 0 0 chr5 30267014 30267132 -122270127 + GA-rich Low_complexity Low_complexity 2 119 0 6 815 389 224 53 7 chr5 30267132 30267264 -122269995 - ORR1D1 LTR MaLR -198 169 1 6 815 960 297 5 0 chr5 30267290 30267502 -122269757 - ID_B1 SINE B4 -3 221 9 6 815 1123 6 22 38 chr5 30267709 30267892 -122269367 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 815 1131 22 0 48 chr5 30267913 30268101 -122269158 + (TC)n Simple_repeat Simple_repeat 2 180 0 6 815 734 169 57 0 chr5 30268102 30268226 -122269033 - B1_Mur4 SINE Alu -15 135 5 6 815 674 270 39 28 chr5 30268259 30268438 -122268821 - B3A SINE B2 -16 182 2 6 815 933 284 131 56 chr5 30268454 30268829 -122268430 + MLT1F1 LTR MaLR 101 541 -19 6 815 504 0 0 0 chr5 30269251 30269307 -122267952 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 6 815 1737 31 0 10 chr5 30269349 30269543 -122267716 + B2_Mm1a SINE B2 2 193 0 6 815 624 354 69 6 chr5 30269702 30270051 -122267208 + HERV16-int LTR ERVL 1632 2002 -2994 6 815 5338 56 17 21 chr5 30270107 30270763 -122266496 + L1Md_F2 LINE L1 5920 6572 -10 6 815 299 149 23 0 chr5 30270785 30270872 -122266387 + A-rich Low_complexity Low_complexity 2 90 0 6 815 294 336 67 0 chr5 30271224 30271328 -122265931 - PB1D10 SINE Alu -6 111 1 6 815 510 283 19 44 chr5 30272014 30272173 -122265086 + ID_B1 SINE B4 63 217 -7 6 815 897 152 0 7 chr5 30272041 30272180 -122265079 + B1_Mur3 SINE Alu 12 149 0 6 815 363 404 62 52 chr5 30272240 30272353 -122264906 + LTR16A LTR ERVL 26 137 -314 6 815 306 0 0 0 chr5 30272353 30272387 -122264872 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 815 1234 62 0 0 chr5 30272387 30272528 -122264731 - B1_Mus1 SINE Alu -2 146 6 6 815 363 404 62 52 chr5 30272528 30272724 -122264535 + LTR16A LTR ERVL 138 333 -118 6 815 333 0 0 0 chr5 30272942 30272979 -122264280 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 815 288 277 35 19 chr5 30274236 30274353 -122262906 + MIR SINE MIR 36 160 -108 6 815 419 259 0 0 chr5 30276867 30276948 -122260311 + ID4 SINE ID 2 82 -1 6 815 435 19 0 0 chr5 30277019 30277071 -122260188 + (CTA)n Simple_repeat Simple_repeat 3 54 0 6 815 584 300 85 14 chr5 30277127 30277408 -122259851 + L1MA9 LINE L1 6009 6309 -3 6 816 304 103 17 17 chr5 30278385 30278444 -122258815 + (TGAA)n Simple_repeat Simple_repeat 4 62 0 6 816 226 158 53 0 chr5 30279152 30279209 -122258050 + T-rich Low_complexity Low_complexity 2 61 0 6 816 1130 80 0 0 chr5 30280317 30280454 -122256805 + B1_Mus1 SINE Alu 2 138 -10 6 816 2587 154 15 5 chr5 30280840 30281231 -122256028 - Lx5 LINE L1 -3 7047 6653 6 816 787 246 28 6 chr5 30282226 30282402 -122254857 + MTE2a LTR MaLR 195 374 -5 6 816 244 297 54 21 chr5 30282400 30282493 -122254766 + Tigger5 DNA MER2_type 2310 2405 -1 6 816 649 203 78 21 chr5 30282615 30282756 -122254503 - B1_Mur1 SINE Alu 0 149 1 6 816 186 227 0 0 chr5 30282772 30282816 -122254443 + A-rich Low_complexity Low_complexity 1 44 0 6 816 241 111 315 0 chr5 30282888 30282942 -122254317 + B3 SINE B2 1 71 -145 6 816 353 245 79 30 chr5 30283603 30283704 -122253555 + HAL1 LINE L1 772 877 -1630 6 816 2824 57 91 0 chr5 30283704 30284056 -122253203 + L1_Mus2 LINE L1 6181 6564 -2 6 816 3381 95 34 4 chr5 30284268 30284734 -122252525 + L1_Mus4 LINE L1 6153 6632 -4 6 816 410 356 96 23 chr5 30284764 30285066 -122252193 + HAL1 LINE L1 1105 1428 -1079 6 816 732 183 40 40 chr5 30285490 30285638 -122251621 + B1_Mur3 SINE Alu 1 148 -1 6 816 555 16 0 0 chr5 30285651 30285715 -122251544 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 816 392 235 0 0 chr5 30285723 30285804 -122251455 + RMER17B LTR ERVK 674 754 -204 6 816 526 267 227 40 chr5 30286489 30287083 -122250176 - HAL1 LINE L1 -161 2346 1642 6 816 313 298 48 91 chr5 30288120 30288330 -122248929 - HAL1 LINE L1 -2273 234 34 6 816 23 38 0 54 chr5 30288574 30288630 -122248629 + AT_rich Low_complexity Low_complexity 1 53 0 6 816 208 244 0 22 chr5 30289274 30289320 -122247939 + polypyrimidine Low_complexity Low_complexity 2 46 0 6 816 399 164 0 0 chr5 30289680 30289784 -122247475 + GA-rich Low_complexity Low_complexity 1 104 0 6 816 242 228 18 0 chr5 30290346 30290403 -122246856 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 6 816 322 253 45 22 chr5 30290699 30290788 -122246471 - L1MA8 LINE L1 -195 6096 6006 6 816 342 0 0 0 chr5 30290950 30290988 -122246271 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 816 263 246 105 0 chr5 30291481 30291538 -122245721 + ID4 SINE ID 21 83 0 6 816 285 284 35 35 chr5 30292008 30292121 -122245138 + L1ME3 LINE L1 5990 6102 -60 6 816 1951 152 197 3 chr5 30292146 30292476 -122244783 - ORR1B1 LTR MaLR 0 394 1 6 816 564 286 6 36 chr5 30293005 30293172 -122244087 - RSINE1 SINE B4 0 165 4 6 816 207 69 0 0 chr5 30293469 30293498 -122243761 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 6 816 807 197 0 0 chr5 30294391 30294518 -122242741 + B1_Mur1 SINE Alu 5 131 -18 6 816 1491 131 60 37 chr5 30294534 30294803 -122242456 - Lx2B LINE L1 -526 6474 6200 6 816 1209 150 97 16 chr5 30294809 30295067 -122242192 + Lx2B LINE L1 5873 6151 -849 6 816 485 307 50 77 chr5 30295308 30295530 -122241729 + B4 SINE B4 1 216 -76 6 816 2528 57 25 0 chr5 30295796 30296112 -122241147 - L1_Mus4 LINE L1 -393 6243 5920 6 816 3011 59 43 18 chr5 30296112 30296507 -122240752 + L1_Mus4 LINE L1 6225 6629 -7 6 816 26 30 0 0 chr5 30297823 30297856 -122239403 + AT_rich Low_complexity Low_complexity 1 33 0 6 816 761 242 137 0 chr5 30298030 30298220 -122239039 + B3 SINE B2 1 216 0 6 816 355 359 94 16 chr5 30298250 30298624 -122238635 + L1ME4a LINE L1 4490 4892 -1254 6 816 471 194 0 0 chr5 30298744 30298842 -122238417 + GA-rich Low_complexity Low_complexity 2 99 0 6 816 258 268 32 108 chr5 30298940 30299086 -122238173 - MIR SINE MIR -114 154 17 6 816 292 321 89 7 chr5 30299693 30299828 -122237431 + L1ME4a LINE L1 5956 6101 -23 6 816 351 0 0 0 chr5 30301170 30301209 -122236050 + (TTA)n Simple_repeat Simple_repeat 1 39 0 6 816 21 36 0 0 chr5 30301421 30301449 -122235810 + AT_rich Low_complexity Low_complexity 1 28 0 6 816 565 239 78 28 chr5 30301474 30301616 -122235643 + B1F SINE Alu 1 149 0 6 816 333 218 138 0 chr5 30301726 30301871 -122235388 + L1_Mur2 LINE L1 3517 3730 -2413 6 816 30768 102 30 38 chr5 30302036 30304879 -122232380 + L1_Mus1 LINE L1 387 3255 -3312 6 816 996 88 0 21 chr5 30304879 30305026 -122232233 + B1_Mus1 SINE Alu 6 143 -5 6 816 30768 102 30 38 chr5 30305026 30308305 -122228954 + L1_Mus1 LINE L1 3256 6566 -1 6 816 1215 143 0 0 chr5 30308310 30308492 -122228767 + ORR1A3 LTR MaLR 145 326 0 6 816 489 307 101 13 chr5 30308711 30308939 -122228320 + MER2 DNA MER2_type 8 255 -90 6 816 3155 57 8 213 chr5 30309690 30310287 -122226972 + IAPLTR2_Mm LTR ERVK 1 475 0 7 816 430 292 75 0 chr5 30310355 30310475 -122226784 + MLT1A1 LTR MaLR 6 134 -274 7 816 391 306 56 0 chr5 30310601 30310709 -122226550 - PB1D10 SINE Alu -3 114 1 7 816 210 156 0 0 chr5 30310754 30310799 -122226460 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 816 470 325 51 78 chr5 30310801 30311058 -122226201 - B4A SINE B4 0 292 43 7 816 660 302 76 23 chr5 30311532 30311874 -122225385 + L1M3 LINE L1 4770 5129 -1011 7 816 1382 208 11 22 chr5 30311874 30312144 -122225115 - MTC LTR MaLR 0 421 155 7 816 3608 72 22 67 chr5 30312144 30312984 -122224275 - Lx3A LINE L1 -773 6208 5437 7 816 3412 92 58 19 chr5 30312984 30313469 -122223790 + Lx3A LINE L1 6477 6980 -1 7 816 889 162 6 11 chr5 30313471 30313525 -122223734 + polypurine Low_complexity Low_complexity 1 54 0 7 816 1299 104 0 0 chr5 30313525 30313705 -122223554 + (GAAA)n Simple_repeat Simple_repeat 1 182 -180 7 816 1299 104 0 0 chr5 30313710 30313887 -122223372 + (GAAA)n Simple_repeat Simple_repeat 183 362 0 7 816 889 162 6 11 chr5 30313887 30314007 -122223252 + polypurine Low_complexity Low_complexity 60 179 0 7 816 1242 100 0 0 chr5 30314019 30314199 -122223060 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 816 582 179 36 0 chr5 30314199 30314311 -122222948 - MTC LTR MaLR -303 118 3 7 816 243 292 138 0 chr5 30314352 30314417 -122222842 + Lx8 LINE L1 7244 7317 -156 7 816 678 270 81 55 chr5 30314461 30314696 -122222563 + B4A SINE B4 48 288 -4 7 816 188 236 0 27 chr5 30314706 30314780 -122222479 + (CATA)n Simple_repeat Simple_repeat 3 74 0 7 816 240 271 29 33 chr5 30315182 30315280 -122221979 + MLT1A1 LTR MaLR 274 404 -4 7 816 1880 271 64 46 chr5 30315289 30316025 -122221234 + L1MB2 LINE L1 5393 6141 -30 7 816 323 258 16 0 chr5 30316289 30316351 -122220908 + ID4 SINE ID 18 80 -3 7 816 1144 95 6 16 chr5 30316397 30316579 -122220680 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 7 816 260 270 43 43 chr5 30316600 30316716 -122220543 - HAL1 LINE L1 -879 1628 1513 7 816 414 100 0 0 chr5 30316921 30316981 -122220278 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 7 816 4870 79 2 0 chr5 30317056 30317639 -122219620 + MT2B2 LTR ERVL 1 584 0 7 816 280 105 0 85 chr5 30317958 30318052 -122219207 + (CACAC)n Simple_repeat Simple_repeat 1 86 0 7 816 452 276 57 8 chr5 30318335 30318459 -122218800 + B1F1 SINE Alu 5 134 -15 7 816 185 0 40 0 chr5 30318480 30318505 -122218754 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 7 816 367 316 133 17 chr5 30318814 30318994 -122218265 + MIR SINE MIR 5 205 -57 7 816 214 282 31 44 chr5 30319000 30319139 -122218120 - L2b LINE L2 -23 3403 3240 7 816 448 276 25 25 chr5 30319139 30319258 -122218001 + PB1D7 SINE Alu 1 119 -1 7 816 181 297 38 94 chr5 30319258 30319278 -122217981 - L2b LINE L2 -155 3271 3254 7 816 291 336 8 46 chr5 30320559 30320690 -122216569 - L2b LINE L2 -1 3374 3249 7 816 441 150 30 0 chr5 30320980 30321080 -122216179 + GA-rich Low_complexity Low_complexity 2 104 0 7 816 318 220 245 20 chr5 30321080 30321182 -122216077 - RSINE1 SINE B4 -40 125 1 7 816 3743 107 46 18 chr5 30321413 30321958 -122215301 - Lx LINE L1 -2 6652 6093 7 816 192 77 0 0 chr5 30322040 30322066 -122215193 + (TTA)n Simple_repeat Simple_repeat 3 28 0 7 816 421 110 351 18 chr5 30322285 30322396 -122214863 - B2_Mm2 SINE B2 -1 194 47 7 816 1318 87 35 0 chr5 30322428 30322600 -122214659 - B2_Mm1t SINE B2 -14 179 2 7 816 717 223 72 82 chr5 30322685 30322880 -122214379 - B3A SINE B2 0 198 6 7 816 277 309 108 9 chr5 30323270 30323381 -122213878 + MIRb SINE MIR 36 157 -111 7 816 226 331 36 29 chr5 30323401 30323515 -122213744 - L2c LINE L2 -10 3365 3246 7 816 1472 189 186 36 chr5 30325006 30325340 -122211919 - ORR1C2 LTR MaLR 0 384 1 7 816 346 235 144 19 chr5 30325421 30325525 -122211734 + PB1D10 SINE Alu 1 117 0 7 816 506 305 132 18 chr5 30325947 30326269 -122210990 + L1MC LINE L1 5417 5778 -416 7 816 361 292 43 17 chr5 30326698 30326813 -122210446 - B1F SINE Alu -1 148 31 7 816 212 340 103 18 chr5 30326967 30327132 -122210127 - MIR SINE MIR -64 198 20 7 816 354 326 50 19 chr5 30327304 30327466 -122209793 - MIR SINE MIR -88 174 3 7 816 187 318 33 56 chr5 30327499 30327589 -122209670 - L2c LINE L2 -189 3198 3111 7 816 485 286 18 140 chr5 30328448 30328619 -122208640 - RSINE1 SINE B4 -14 151 2 7 816 466 321 54 69 chr5 30328755 30328959 -122208300 - MER63A DNA AcHobo 0 210 10 7 816 1831 55 0 0 chr5 30329404 30329622 -122207637 + L1Md_F2 LINE L1 5369 5586 -297 7 816 9263 20 1 2 chr5 30329623 30330619 -122206640 + L1Md_F2 LINE L1 5588 6582 0 7 816 566 246 207 0 chr5 30330622 30330801 -122206458 + B3 SINE B2 1 216 0 7 816 5836 64 5 43 chr5 30331803 30332572 -122204687 + L1Md_F2 LINE L1 5842 6581 -1 7 816 704 12 12 0 chr5 30334737 30334822 -122202437 + (GA)n Simple_repeat Simple_repeat 1 86 0 7 816 324 0 0 0 chr5 30336640 30336676 -122200583 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 816 230 216 70 120 chr5 30337151 30337251 -122200008 - B2_Mm2 SINE B2 -70 125 31 7 816 286 314 71 13 chr5 30337291 30337446 -122199813 - MIR SINE MIR -78 184 21 7 816 221 239 42 0 chr5 30337500 30337571 -122199688 + (TATATG)n Simple_repeat Simple_repeat 1 74 0 7 816 492 18 0 0 chr5 30339234 30339291 -122197968 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 816 279 0 0 0 chr5 30340560 30340591 -122196668 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 816 843 161 35 0 chr5 30340602 30340745 -122196514 + B1_Mur2 SINE Alu 2 149 0 7 816 189 0 0 0 chr5 30340765 30340786 -122196473 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 7 816 195 312 107 0 chr5 30340921 30341033 -122196226 + MIR3 SINE MIR 76 199 -9 7 816 8979 65 4 8 chr5 30342308 30343950 -122193309 - L1_Mus1 LINE L1 0 6567 4935 7 816 1460 82 0 20 chr5 30343950 30344148 -122193111 + B2_Mm2 SINE B2 2 195 0 7 816 8979 97 2 16 chr5 30344148 30344461 -122192798 - L1_Mus1 LINE L1 -949 4934 4628 7 816 321 237 82 0 chr5 30345240 30345337 -122191922 - MER5A1 DNA MER1_type -1 165 61 7 816 39 74 0 0 chr5 30346213 30346294 -122190965 + AT_rich Low_complexity Low_complexity 1 81 0 7 816 25 0 0 0 chr5 30346488 30346513 -122190746 + AT_rich Low_complexity Low_complexity 1 25 0 7 816 271 269 0 29 chr5 30347426 30347495 -122189764 + (TATG)n Simple_repeat Simple_repeat 1 67 0 7 816 576 0 0 0 chr5 30347582 30347646 -122189613 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 816 939 18 0 0 chr5 30347646 30347755 -122189504 + (TTC)n Simple_repeat Simple_repeat 2 110 0 7 816 7373 150 25 14 chr5 30347756 30349004 -122188255 - Lx3C LINE L1 -1 6975 5715 7 816 3013 134 55 24 chr5 30349004 30349614 -122187645 - RLTR13D2 LTR ERVK 0 1023 117 7 816 1728 26 0 0 chr5 30349614 30349807 -122187452 + B2_Mm1t SINE B2 1 193 0 7 816 2051 196 159 115 chr5 30349807 30349968 -122187291 - RLTR13D2 LTR ERVK -690 116 1 7 816 9904 125 33 43 chr5 30349968 30350433 -122186826 - Lx3C LINE L1 -163 5714 5292 7 816 1027 46 62 0 chr5 30350433 30350563 -122186696 - B1_Mm SINE Alu -9 138 1 7 816 1049 133 71 22 chr5 30350572 30350756 -122186503 - Lx3C LINE L1 -8 6968 6776 7 816 9904 125 33 43 chr5 30350756 30351156 -122186103 - Lx3C LINE L1 -586 5291 4906 7 816 399 21 0 0 chr5 30351156 30351204 -122186055 + (CATA)n Simple_repeat Simple_repeat 1 48 0 7 816 9904 125 33 43 chr5 30351204 30352043 -122185216 - Lx3C LINE L1 -972 4905 4019 7 816 618 139 0 0 chr5 30352043 30352144 -122185115 - Lx3C LINE L1 -2140 3737 3637 7 816 2198 161 49 10 chr5 30352148 30352555 -122184704 + Lx3C LINE L1 6551 6973 -3 7 816 980 230 67 18 chr5 30352695 30353036 -122184223 - L1MC LINE L1 -1451 4695 4338 7 816 1404 62 45 0 chr5 30353046 30353224 -122184035 - B2_Mm2 SINE B2 -8 187 2 7 816 336 275 74 16 chr5 30353276 30353398 -122183861 + B1F1 SINE Alu 12 140 -9 7 816 1150 49 0 20 chr5 30353547 30353693 -122183566 + B1_Mus2 SINE Alu 5 147 0 7 816 225 0 0 0 chr5 30353693 30353718 -122183541 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 7 816 4166 152 27 13 chr5 30354317 30355589 -122181670 + L1Md_F LINE L1 1049 2320 -4205 7 816 6617 85 14 7 chr5 30357480 30358890 -122178369 + L1_Mus1 LINE L1 4942 6360 -207 7 816 339 316 54 54 chr5 30359012 30359041 -122178218 + ID_B1 SINE B4 50 216 -8 7 816 447 314 22 7 chr5 30359041 30359179 -122178080 + B1F SINE Alu 2 141 -8 7 816 968 271 36 32 chr5 30359479 30359538 -122177721 - B4 SINE B4 -12 280 215 7 816 356 0 23 0 chr5 30359538 30359582 -122177677 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 7 816 968 271 36 32 chr5 30359582 30359800 -122177459 - B4 SINE B4 -78 214 3 7 816 4277 47 10 2 chr5 30360726 30361234 -122176025 + RLTR1B LTR ERV1 1 512 0 7 816 239 254 57 100 chr5 30361251 30361391 -122175868 + RLTR41 LTR ERV1 251 384 -62 7 816 584 259 68 8 chr5 30361438 30361672 -122175587 + L1MA4A LINE L1 5681 5928 -375 7 816 664 254 75 5 chr5 30362041 30362227 -122175032 - Lx8 LINE L1 -388 7085 6887 7 816 283 198 180 0 chr5 30362390 30362501 -122174758 + L1M2 LINE L1 4454 4584 -1559 7 816 2255 167 85 28 chr5 30362532 30363026 -122174233 + RMER16 LTR ERVK 12 533 0 7 816 636 260 134 43 chr5 30363026 30363153 -122174106 + L1M4 LINE L1 4594 4720 -1426 7 816 1321 104 11 0 chr5 30363153 30363335 -122173924 + B2_Mm1t SINE B2 1 184 -9 7 816 636 260 134 43 chr5 30363335 30363478 -122173781 + L1M4 LINE L1 4721 4892 -1254 7 816 189 0 0 0 chr5 30363478 30363499 -122173760 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 7 816 636 260 134 43 chr5 30363499 30363601 -122173658 + L1M4 LINE L1 4893 5000 -1146 7 816 1016 236 18 33 chr5 30363591 30363863 -122173396 + L1Md_F LINE L1 258 525 -5994 7 816 290 152 17 0 chr5 30364955 30365014 -122172245 + (TA)n Simple_repeat Simple_repeat 1 60 0 7 816 22 56 0 0 chr5 30365504 30365540 -122171719 + AT_rich Low_complexity Low_complexity 1 36 0 7 816 530 272 59 14 chr5 30366646 30366856 -122170403 + MLT2C2 LTR ERVL 85 305 -159 7 816 333 0 0 0 chr5 30366866 30366903 -122170356 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 816 602 124 52 0 chr5 30366903 30367056 -122170203 + (CAGAGA)n Simple_repeat Simple_repeat 2 162 0 8 816 1664 26 0 0 chr5 30367546 30367735 -122169524 - B2_Mm1a SINE B2 -4 189 1 8 816 549 80 0 0 chr5 30367901 30367976 -122169283 + (TC)n Simple_repeat Simple_repeat 2 76 0 8 816 9695 128 139 4 chr5 30368703 30370482 -122166777 + L1_Mm LINE L1 1811 3829 -2054 8 816 2490 122 99 0 chr5 30370471 30370855 -122166404 + L1_Mm LINE L1 5388 5809 -74 8 816 633 105 0 0 chr5 30370855 30370941 -122166318 + L1_Mur1 LINE L1 5497 5582 -304 8 816 2096 119 81 13 chr5 30372306 30372494 -122164765 + RLTR9E LTR ERVK 1 212 -197 8 816 2681 65 168 133 chr5 30372494 30372989 -122164270 - RLTR1B LTR ERV1 0 512 1 8 816 2096 119 81 13 chr5 30372989 30373183 -122164076 + RLTR9E LTR ERVK 213 408 -1 8 816 8300 259 43 24 chr5 30373184 30376306 -122160953 + ETnERV-int LTR ERVK 2 3055 -3112 8 816 33583 73 9 17 chr5 30376308 30381554 -122155705 + L1Md_F2 LINE L1 387 5586 -297 8 816 8216 47 2 2 chr5 30381554 30382549 -122154710 + L1Md_F2 LINE L1 5587 6581 -1 8 816 17398 105 16 38 chr5 30382553 30385214 -122152045 + ETnERV2-int LTR ERVK 1656 6429 -977 8 816 343 157 0 50 chr5 30385312 30385392 -122151867 + RLTR45-int LTR ERVK 6010 6072 -1172 8 816 798 145 93 122 chr5 30385392 30385596 -122151663 + ETnERV3-int LTR ERVK 5529 5726 -82 8 816 1465 164 136 6 chr5 30385617 30386094 -122151165 + RLTR13D6 LTR ERVK 1 539 -363 8 816 455 43 101 0 chr5 30386094 30386163 -122151096 + ETnERV2-int LTR ERVK 7331 7406 0 8 816 2943 80 20 10 chr5 30386163 30386568 -122150691 + RLTR9E LTR ERVK 1 409 0 8 816 3152 25 8 0 chr5 30387140 30387504 -122149755 + L1Md_F2 LINE L1 6214 6580 -2 8 816 237 341 68 30 chr5 30387867 30388000 -122149259 - B1F SINE Alu -2 147 10 8 816 373 224 381 17 chr5 30388665 30388783 -122148476 + RSINE1 SINE B4 3 163 -2 8 816 189 0 0 0 chr5 30389246 30389267 -122147992 + (T)n Simple_repeat Simple_repeat 1 21 0 8 816 1644 47 0 0 chr5 30389267 30389460 -122147799 - B2_Mm1t SINE B2 0 193 1 8 816 1446 65 43 0 chr5 30391094 30391280 -122145979 + B2_Mm2 SINE B2 1 194 -1 8 816 2782 222 109 99 chr5 30391475 30391508 -122145751 + RCHARR1 DNA MER1_type 1 29 -945 8 816 186 43 0 0 chr5 30391508 30391531 -122145728 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 816 2782 222 109 99 chr5 30391531 30391970 -122145289 + RCHARR1 DNA MER1_type 30 435 -539 8 816 395 311 80 13 chr5 30391970 30392120 -122145139 - RSINE1 SINE B4 -3 162 3 8 816 2782 222 109 99 chr5 30392120 30392167 -122145092 + RCHARR1 DNA MER1_type 436 481 -493 8 816 1224 54 0 0 chr5 30392167 30392314 -122144945 + B1_Mus2 SINE Alu 1 147 0 8 816 2782 222 109 99 chr5 30392314 30392757 -122144502 + RCHARR1 DNA MER1_type 482 974 0 8 816 781 235 0 7 chr5 30393138 30393288 -122143971 + B1_Mur3 SINE Alu 1 149 0 8 816 275 306 145 0 chr5 30393294 30393418 -122143841 + ID_B1 SINE B4 81 222 -2 8 816 620 190 0 87 chr5 30393426 30393553 -122143706 + B1_Mur1 SINE Alu 27 142 -7 8 816 693 230 59 0 chr5 30393627 30393762 -122143497 - RSINE1 SINE B4 -8 157 15 8 816 251 243 127 40 chr5 30393763 30393913 -122143346 - L1MB4 LINE L1 -85 6095 5933 8 816 1797 156 107 6 chr5 30394030 30394366 -122142893 - ORR1C1 LTR MaLR -8 370 1 8 816 229 341 112 112 chr5 30394907 30395254 -122142005 + RMER21A LTR ERV1 418 764 -183 8 816 466 331 16 87 chr5 30395456 30395641 -122141618 - B4A SINE B4 -118 174 3 8 816 861 176 0 39 chr5 30395649 30395803 -122141456 - B1_Mus1 SINE Alu 0 148 1 8 816 620 260 42 42 chr5 30396452 30396641 -122140618 - B3 SINE B2 -27 189 1 8 816 539 117 333 0 chr5 30396700 30396811 -122140448 - B1_Mus1 SINE Alu 0 148 1 8 816 744 299 48 65 chr5 30397041 30397243 -122140016 - B4A SINE B4 -2 290 87 8 816 538 168 369 13 chr5 30397243 30397400 -122139859 - B3 SINE B2 -3 213 1 8 816 744 299 48 65 chr5 30397400 30397487 -122139772 - B4A SINE B4 -206 86 6 8 816 285 336 55 27 chr5 30397658 30397768 -122139491 - L2b LINE L2 -5 3370 3258 8 816 243 0 0 0 chr5 30398907 30398934 -122138325 + (A)n Simple_repeat Simple_repeat 1 27 0 8 816 916 35 0 0 chr5 30399281 30399394 -122137865 + B1_Mus1 SINE Alu 33 145 -3 8 816 324 0 0 0 chr5 30399394 30399430 -122137829 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 8 816 595 234 7 34 chr5 30400308 30400454 -122136805 + ID_B1 SINE B4 78 219 -5 8 816 15918 112 15 6 chr5 30400480 30403054 -122134205 - L1VL4 LINE L1 -2230 3653 1080 8 816 1578 132 0 8 chr5 30403056 30403315 -122133944 - L1VL4 LINE L1 -5449 1208 952 8 816 7462 79 9 7 chr5 30403346 30404698 -122132561 - L1_Mus1 LINE L1 -1 6566 5213 8 816 2938 114 75 3 chr5 30404698 30405252 -122132007 - L1_Mus1 LINE L1 -911 4972 4276 8 816 1185 187 17 0 chr5 30405238 30405473 -122131786 - L1Md_F LINE L1 -5653 866 628 8 816 531 252 37 0 chr5 30405481 30405616 -122131643 - L1Md_F LINE L1 -5813 706 567 8 816 339 322 24 32 chr5 30405633 30405860 -122131399 - L1VL1 LINE L1 -5934 484 85 8 816 238 173 63 51 chr5 30406210 30406266 -122130993 + Charlie2b DNA MER1_type 2217 2277 -505 8 816 4114 56 87 2 chr5 30406266 30406786 -122130473 - LTRIS2 LTR ERV1 0 564 1 8 816 238 173 63 51 chr5 30406786 30406808 -122130451 + Charlie2b DNA MER1_type 2278 2296 -486 8 816 229 26 53 0 chr5 30406836 30406874 -122130385 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 8 816 1138 250 34 55 chr5 30407216 30407281 -122129978 + Lx5 LINE L1 1000 1032 -6696 8 816 1150 88 0 0 chr5 30407281 30407429 -122129830 + B1_Mus1 SINE Alu 1 148 0 8 816 26186 156 27 20 chr5 30407429 30408468 -122128791 + Lx5 LINE L1 1033 2094 -3783 8 816 252 0 0 0 chr5 30408468 30408496 -122128763 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 12 26186 143 28 15 chr5 30408496 30410813 -122126446 + Lx5 LINE L1 2095 4419 -1458 8 817 4682 114 59 76 chr5 30410813 30411735 -122125524 + RMER17A2 LTR ERVK 1 906 0 8 817 26186 155 46 18 chr5 30411735 30414138 -122123121 + Lx5 LINE L1 4420 6918 -132 8 817 4563 73 0 30 chr5 30414138 30414743 -122122516 - LTRIS_Mus LTR ERV1 0 587 1 8 817 7130 173 73 23 chr5 30414743 30414830 -122122429 + Lx5 LINE L1 6919 7007 -43 8 817 27 81 0 0 chr5 30414851 30414913 -122122346 + AT_rich Low_complexity Low_complexity 1 62 0 8 817 1237 114 28 0 chr5 30414914 30415090 -122122169 + B2_Mm2 SINE B2 1 181 -14 8 817 438 89 97 10 chr5 30415118 30415216 -122122043 + B2_Mm2 SINE B2 47 180 -15 8 817 1263 41 0 0 chr5 30415219 30415365 -122121894 - B1_Mus2 SINE Alu 0 147 2 8 817 1662 32 0 0 chr5 30415400 30415587 -122121672 + B2_Mm1a SINE B2 1 187 -6 8 817 706 138 26 0 chr5 30415664 30415780 -122121479 + RLTR40 LTR ERVK 1 119 -698 8 817 3586 120 13 25 chr5 30415781 30416203 -122121056 - L1_Mm LINE L1 -216 5667 5245 8 817 6644 50 5 5 chr5 30416203 30417005 -122120254 + RLTR13C2 LTR ERVK 4 805 -3 8 817 3586 120 13 25 chr5 30417005 30417136 -122120123 - L1_Mm LINE L1 -639 5244 5121 8 817 6598 89 15 11 chr5 30417132 30417385 -122119874 + L1_Mus3 LINE L1 5708 5961 -677 8 817 2999 64 149 87 chr5 30417385 30417867 -122119392 - RLTR1B LTR ERV1 0 512 1 8 817 6598 89 15 11 chr5 30417867 30418536 -122118723 + L1_Mus3 LINE L1 5962 6634 -4 8 817 200 277 135 53 chr5 30418625 30418810 -122118449 - MIR SINE MIR -70 206 4 8 817 1099 50 21 7 chr5 30419168 30419309 -122117950 + B1_Mm SINE Alu 3 145 -2 8 817 2008 65 79 14 chr5 30419684 30419964 -122117295 + L1_Mus3 LINE L1 6329 6626 -12 8 817 710 134 175 7 chr5 30419969 30420112 -122117147 + RMER6A LTR ERVK 590 756 0 8 817 271 277 102 66 chr5 30420429 30420595 -122116664 - MER102a DNA MER1_type -127 203 32 8 817 657 213 55 0 chr5 30420850 30420977 -122116282 + B1_Mur1 SINE Alu 13 146 -3 8 817 410 191 63 9 chr5 30420977 30421088 -122116171 + Lx5 LINE L1 6934 7050 0 8 817 3434 23 5 12 chr5 30421400 30421799 -122115460 + MTA_Mm LTR MaLR 1 396 0 8 817 21 71 0 0 chr5 30421946 30421988 -122115271 + AT_rich Low_complexity Low_complexity 1 42 0 8 817 266 239 30 0 chr5 30423994 30424061 -122113198 - PB1D10 SINE Alu -7 110 42 8 817 3151 69 2 5 chr5 30425211 30425606 -122111653 + MTA_Mm LTR MaLR 1 394 -2 8 817 221 139 40 140 chr5 30429695 30429745 -122107514 + B1F SINE Alu 81 125 -24 8 817 305 259 22 11 chr5 30429762 30429852 -122107407 + L1MC5 LINE L1 6671 6761 -1200 8 817 2390 148 202 4 chr5 30430024 30430504 -122106755 - RMER15 LTR ERVL 0 575 1 8 817 233 290 61 53 chr5 30430603 30430734 -122106525 + B1F1 SINE Alu 18 149 0 8 817 282 202 75 97 chr5 30430800 30430893 -122106366 + PB1D10 SINE Alu 6 96 -21 8 817 234 0 0 0 chr5 30431219 30431245 -122106014 + (A)n Simple_repeat Simple_repeat 1 26 0 8 817 205 184 0 58 chr5 30431612 30431664 -122105595 + G-rich Low_complexity Low_complexity 1 49 0 8 817 249 33 0 0 chr5 30433726 30433756 -122103503 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 817 276 243 43 0 chr5 30434718 30434788 -122102471 + CT-rich Low_complexity Low_complexity 1 73 0 8 817 323 339 0 0 chr5 30435173 30435291 -122101968 - PB1D7 SINE Alu -1 119 2 8 817 393 212 71 24 chr5 30435350 30435453 -122101806 - PB1D9 SINE Alu -12 108 2 8 817 299 212 36 36 chr5 30435749 30435832 -122101427 - ID2 SINE ID 0 83 1 8 817 420 20 0 0 chr5 30435878 30435927 -122101332 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 817 422 245 99 9 chr5 30435927 30436038 -122101221 - RSINE1 SINE B4 -41 124 4 8 817 230 206 85 0 chr5 30436039 30436116 -122101143 - PB1D10 SINE Alu -5 144 54 8 817 224 306 119 40 chr5 30436199 30436325 -122100934 - MIR3 SINE MIR -72 136 1 8 817 216 250 210 43 chr5 30437333 30437471 -122099788 - MIR SINE MIR -88 174 14 8 817 905 322 15 7 chr5 30438852 30439124 -122098135 - B4A SINE B4 -1 291 18 8 817 979 83 0 0 chr5 30439248 30439380 -122097879 - B2_Mm2 SINE B2 -54 141 10 8 817 302 277 0 24 chr5 30439304 30439389 -122097870 - RSINE1 SINE B4 -79 86 4 8 817 216 0 0 0 chr5 30439793 30439817 -122097442 + (C)n Simple_repeat Simple_repeat 1 24 0 8 817 26 0 0 0 chr5 30441217 30441243 -122096016 + GC_rich Low_complexity Low_complexity 1 26 0 8 817 1314 101 14 4 chr5 30441910 30442111 -122095148 - B2_Mm2 SINE B2 0 216 2 8 817 219 36 0 0 chr5 30448336 30448364 -122088895 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 817 437 0 19 0 chr5 30448374 30448427 -122088832 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 817 1199 48 0 39 chr5 30450399 30450552 -122086707 - B1_Mus1 SINE Alu 0 148 2 8 817 282 333 159 38 chr5 30450912 30451227 -122086032 + L3 LINE CR1 3522 3874 -615 9 817 993 186 21 0 chr5 30451288 30451476 -122085783 + ID_B1 SINE B4 2 193 -31 9 817 287 216 68 0 chr5 30451567 30451641 -122085618 + MLT1H LTR MaLR 81 159 -390 9 817 1326 81 0 46 chr5 30451865 30452059 -122085200 + B2_Mm2 SINE B2 2 186 -9 9 817 391 231 28 0 chr5 30452244 30452352 -122084907 - B2_Mm2 SINE B2 -5 190 80 9 817 747 207 7 52 chr5 30452884 30453037 -122084222 + RSINE1 SINE B4 2 147 -18 9 817 815 199 205 0 chr5 30453998 30454169 -122083090 + B3 SINE B2 1 206 -10 9 817 372 162 54 0 chr5 30455870 30455944 -122081315 - ID_B1 SINE B4 -1 223 146 9 817 255 214 65 97 chr5 30455944 30455963 -122081296 - PB1D7 SINE Alu -1 119 30 9 817 565 135 37 46 chr5 30456680 30456702 -122080557 - B1_Mur4 SINE Alu -1 149 132 9 817 198 0 0 0 chr5 30456702 30456724 -122080535 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 817 589 81 23 0 chr5 30456724 30456810 -122080449 - B1_Mus2 SINE Alu -19 128 41 9 817 204 40 0 0 chr5 30457549 30457574 -122079685 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 817 404 302 112 6 chr5 30457589 30457749 -122079510 - MER2 DNA MER2_type -1 344 168 9 817 354 98 0 0 chr5 30457751 30457802 -122079457 + (TA)n Simple_repeat Simple_repeat 2 52 0 9 817 269 262 24 24 chr5 30458387 30458469 -122078790 - ID4_ SINE ID 0 83 2 9 817 336 250 53 0 chr5 30459875 30459951 -122077308 - ID4 SINE ID 0 83 4 9 817 580 187 111 7 chr5 30460025 30460160 -122077099 - B1_Mur2 SINE Alu 0 149 1 9 817 523 231 51 22 chr5 30460372 30460509 -122076750 + B1_Mur2 SINE Alu 1 141 -8 9 817 1403 77 0 6 chr5 30460998 30461181 -122076078 + B2_Mm2 SINE B2 1 182 -13 9 817 888 178 0 0 chr5 30461286 30461432 -122075827 - B1_Mur4 SINE Alu -3 147 2 9 817 741 132 0 0 chr5 30461751 30461865 -122075394 + MTC LTR MaLR 308 421 0 9 817 296 206 79 0 chr5 30461935 30461998 -122075261 + tRNA-Ala-GCY_ tRNA tRNA 5 72 -3 9 817 389 218 81 0 chr5 30462462 30462549 -122074710 + ERVL-E-int LTR ERVL 5096 5189 -478 9 817 325 329 45 62 chr5 30462552 30462730 -122074529 + MER76 LTR ERVL 102 276 -415 9 817 226 148 200 18 chr5 30462788 30462843 -122074416 + MER76 LTR ERVL 404 468 -223 9 817 347 300 43 51 chr5 30462832 30462970 -122074289 + B3A SINE B2 81 216 0 9 817 809 290 154 44 chr5 30463066 30463356 -122073903 + L1MD LINE L1 3540 3841 -2305 9 817 180 0 0 0 chr5 30463356 30463376 -122073883 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 817 809 289 163 44 chr5 30463376 30463815 -122073444 + L1MD LINE L1 3842 4344 -1802 9 817 1553 175 25 79 chr5 30463964 30464330 -122072929 + ORR1B1 LTR MaLR 41 386 -8 9 817 226 301 123 85 chr5 30464552 30464614 -122072645 + L1M4 LINE L1 4840 4902 -1244 9 817 486 235 94 14 chr5 30464614 30464752 -122072507 - B1_Mur2 SINE Alu 0 149 1 9 817 285 237 155 25 chr5 30464752 30464900 -122072359 + L1M4 LINE L1 4892 5058 -1088 9 817 319 278 18 18 chr5 30464905 30465015 -122072244 + L1MD LINE L1 5182 5291 -855 9 817 569 192 33 33 chr5 30465528 30465679 -122071580 + B2_Mm2 SINE B2 37 187 -8 9 817 763 289 63 0 chr5 30465792 30466079 -122071180 + L1ME1 LINE L1 5517 5821 -358 9 817 274 302 294 0 chr5 30466086 30466212 -122071047 + RSINE1 SINE B4 3 165 0 9 817 308 191 83 0 chr5 30466253 30466337 -122070922 + L1ME1 LINE L1 5815 5905 -274 9 817 580 290 45 0 chr5 30466481 30466636 -122070623 - RSINE1 SINE B4 -2 163 2 9 817 504 246 93 36 chr5 30466638 30466777 -122070482 - B1F SINE Alu -1 148 2 9 817 718 155 0 37 chr5 30467182 30467316 -122069943 + B1_Mur3 SINE Alu 10 138 -11 9 817 507 270 52 7 chr5 30467678 30467831 -122069428 + RSINE1 SINE B4 2 161 -4 9 817 347 295 53 18 chr5 30468171 30468285 -122068974 + PB1D7 SINE Alu 1 118 -2 9 817 563 176 112 22 chr5 30468309 30468443 -122068816 + B1_Mur2 SINE Alu 3 148 -1 9 817 267 237 13 13 chr5 30468578 30468655 -122068604 + PB1D7 SINE Alu 24 100 -20 9 817 459 279 0 18 chr5 30469639 30469752 -122067507 + PB1 SINE Alu 15 125 -2 9 817 584 179 0 43 chr5 30470120 30470237 -122067022 + PB1D9 SINE Alu 9 120 0 9 817 277 280 54 0 chr5 30471412 30471505 -122065754 - B4A SINE B4 -193 99 2 9 817 1159 51 0 0 chr5 30472339 30472477 -122064782 + B1_Mus1 SINE Alu 1 138 -10 9 817 414 0 0 0 chr5 30472477 30472523 -122064736 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 9 817 389 211 111 0 chr5 30472932 30473022 -122064237 - ID_B1 SINE B4 -15 209 110 9 817 294 236 264 0 chr5 30473022 30473038 -122064221 - B1F SINE Alu -15 134 1 9 817 363 216 20 16 chr5 30473489 30473581 -122063678 - PB1D9 SINE Alu -21 129 40 9 817 616 162 0 0 chr5 30473616 30473715 -122063544 - B1_Mur1 SINE Alu -5 144 46 9 817 231 317 48 24 chr5 30473641 30473725 -122063534 - B4 SINE B4 -84 208 123 9 817 241 228 18 0 chr5 30474099 30474156 -122063103 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 817 344 145 90 9 chr5 30474159 30474270 -122062989 - Lx9 LINE L1 -48 7596 7477 9 817 450 239 16 103 chr5 30474230 30474473 -122062786 + Lx9 LINE L1 7422 7643 -1 9 817 539 262 214 18 chr5 30474804 30475080 -122062179 + MLT1D LTR MaLR 79 408 -97 9 817 316 221 14 29 chr5 30475108 30475178 -122062081 - ID4_ SINE ID -13 70 2 9 817 297 151 33 0 chr5 30475211 30475276 -122061983 + PB1D9 SINE Alu 34 108 -12 9 817 454 177 86 82 chr5 30475271 30475428 -122061831 + B3A SINE B2 64 198 0 9 817 763 211 0 26 chr5 30475435 30475573 -122061686 + B1_Mur1 SINE Alu 3 140 -9 9 817 516 16 0 0 chr5 30475573 30475634 -122061625 + (CAAAC)n Simple_repeat Simple_repeat 1 61 0 9 817 763 211 0 26 chr5 30475634 30475646 -122061613 + B1_Mur1 SINE Alu 141 149 0 9 817 328 232 0 182 chr5 30476063 30476200 -122061059 - ID_B1 SINE B4 -3 221 110 9 817 363 225 24 36 chr5 30476212 30476295 -122060964 - B1_Mur1 SINE Alu -24 125 44 9 817 238 254 86 43 chr5 30476324 30476394 -122060865 - ID4 SINE ID -10 73 1 9 817 917 133 218 37 chr5 30477197 30477385 -122059874 + URR1A DNA MER1_type 5 226 0 9 817 1235 83 5 111 chr5 30477445 30477596 -122059663 + B2_Mm2 SINE B2 1 152 -43 9 817 327 104 0 0 chr5 30477596 30477644 -122059615 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 817 1235 83 5 111 chr5 30477644 30477709 -122059550 + B2_Mm2 SINE B2 153 194 -1 9 817 264 261 15 0 chr5 30477851 30477916 -122059343 + BC1_Mm scRNA scRNA 14 79 -73 9 817 241 169 15 30 chr5 30478100 30478167 -122059092 + (CAAA)n Simple_repeat Simple_repeat 2 67 0 9 817 313 233 55 0 chr5 30478370 30478443 -122058816 + PB1D9 SINE Alu 37 113 -7 9 817 1285 79 90 0 chr5 30479327 30479505 -122057754 - B2_Mm2 SINE B2 0 195 2 9 817 206 260 110 0 chr5 30479893 30479966 -122057293 - MIR SINE MIR -59 149 69 9 817 1197 68 0 0 chr5 30480151 30480298 -122056961 - B1_Mus2 SINE Alu 0 147 1 9 817 442 105 124 34 chr5 30480299 30480388 -122056871 - B1_Mur1 SINE Alu 0 149 53 9 817 267 54 0 0 chr5 30480424 30480461 -122056798 + (T)n Simple_repeat Simple_repeat 1 37 0 9 817 216 0 0 0 chr5 30483242 30483266 -122053993 + (T)n Simple_repeat Simple_repeat 1 24 0 9 817 214 278 188 16 chr5 30483460 30483588 -122053671 - MIR SINE MIR -73 189 40 9 817 599 203 27 55 chr5 30483821 30483967 -122053292 - B1_Mur2 SINE Alu 0 149 8 9 817 395 229 117 17 chr5 30484257 30484377 -122052882 + B1F1 SINE Alu 18 149 0 9 817 269 284 0 47 chr5 30484410 30484495 -122052764 + PB1D10 SINE Alu 34 114 -3 9 817 244 281 78 0 chr5 30484554 30484618 -122052641 - ID4 SINE ID -13 70 2 9 817 864 122 62 28 chr5 30485225 30485369 -122051890 - B1_Mur4 SINE Alu 0 150 2 9 817 718 287 89 41 chr5 30485527 30485796 -122051463 + B4A SINE B4 9 290 -2 9 817 740 176 22 7 chr5 30485822 30485959 -122051300 - B1_Mur2 SINE Alu 0 149 11 9 817 344 284 38 119 chr5 30485824 30485984 -122051275 - B4 SINE B4 -69 223 77 9 817 307 331 0 78 chr5 30485867 30486008 -122051251 - MT2B LTR ERVL -345 256 127 9 817 721 282 205 13 chr5 30486176 30486571 -122050688 - MLT1F LTR MaLR -77 471 1 9 817 442 306 14 7 chr5 30486640 30486788 -122050471 + RSINE1 SINE B4 4 152 -13 9 817 474 262 19 0 chr5 30487390 30487497 -122049762 - RSINE1 SINE B4 -55 110 2 9 817 1154 190 44 0 chr5 30487503 30487708 -122049551 - B3 SINE B2 -2 214 1 9 817 364 213 53 0 chr5 30487757 30487832 -122049427 - B1_Mur1 SINE Alu -29 120 42 9 817 369 81 355 0 chr5 30487833 30487943 -122049316 - B2_Mm2 SINE B2 0 195 47 9 817 1145 95 6 0 chr5 30487995 30488163 -122049096 - B2_Mm1t SINE B2 -24 169 1 9 817 327 176 0 0 chr5 30488163 30488212 -122049047 - PB1D9 SINE Alu -67 53 5 9 817 1050 213 20 0 chr5 30488338 30488540 -122048719 - B3 SINE B2 -10 206 1 9 817 312 313 105 102 chr5 30488547 30488955 -122048304 - L1M5 LINE L1 -2062 5820 5389 9 817 862 267 65 18 chr5 30488955 30489230 -122048029 - B4A SINE B4 -4 288 1 9 817 312 307 94 109 chr5 30489230 30489338 -122047921 - L1M5 LINE L1 -733 5391 5275 9 817 656 225 107 25 chr5 30489472 30489668 -122047591 + B3 SINE B2 1 212 -4 9 817 265 298 14 97 chr5 30489677 30489822 -122047437 - L1MC4 LINE L1 -151 7891 7759 9 817 340 239 178 12 chr5 30489859 30490023 -122047236 + MIR SINE MIR 9 196 -66 9 817 294 161 0 0 chr5 30490294 30490342 -122046917 + T-rich Low_complexity Low_complexity 15 62 0 9 817 1256 34 0 0 chr5 30490342 30490490 -122046769 - B1_Mus1 SINE Alu 0 148 1 1 817 294 161 0 0 chr5 30490490 30490503 -122046756 + T-rich Low_complexity Low_complexity 2 14 0 1 817 24 67 0 0 chr5 30491307 30491352 -122045907 + AT_rich Low_complexity Low_complexity 1 45 0 1 817 225 266 132 0 chr5 30491372 30491479 -122045780 + MIRm SINE MIR 24 147 -121 1 817 294 253 22 22 chr5 30491539 30491628 -122045631 + BC1_Mm scRNA scRNA 6 94 -58 1 817 1105 63 14 14 chr5 30493004 30493148 -122044111 - B1_Mm SINE Alu -2 145 2 1 817 23 0 0 0 chr5 30493158 30493181 -122044078 + AT_rich Low_complexity Low_complexity 1 23 0 1 817 1161 68 0 12 chr5 30493467 30493632 -122043627 - B2_Mm2 SINE B2 -32 163 1 1 817 667 120 8 8 chr5 30493743 30493861 -122043398 + (TTTTC)n Simple_repeat Simple_repeat 5 122 0 1 817 1634 32 0 11 chr5 30494146 30494337 -122042922 + B2_Mm1a SINE B2 1 189 -4 1 817 545 154 371 19 chr5 30494485 30494644 -122042615 + B3 SINE B2 1 215 -1 1 817 293 277 15 0 chr5 30494678 30494743 -122042516 + RSINE1 SINE B4 9 74 -91 1 817 612 258 23 0 chr5 30495253 30495381 -122041878 - B1_Mur1 SINE Alu -6 143 13 1 817 474 269 20 20 chr5 30495457 30495605 -122041654 - B1_Mur1 SINE Alu -1 148 1 1 817 319 167 62 2 chr5 30495639 30495711 -122041548 - BC1_Mm scRNA scRNA -7 76 2 1 817 246 316 13 0 chr5 30495859 30495935 -122041324 - ID4_ SINE ID -2 81 5 1 817 517 226 66 22 chr5 30496176 30496312 -122040947 + B1F SINE Alu 1 142 -7 1 817 501 163 102 0 chr5 30496324 30496422 -122040837 + PB1D9 SINE Alu 1 108 -12 1 817 21 0 0 0 chr5 30496474 30496495 -122040764 + AT_rich Low_complexity Low_complexity 1 21 0 1 817 366 213 0 62 chr5 30496509 30496589 -122040670 - ID4 SINE ID -6 77 3 1 817 236 237 65 13 chr5 30497468 30497545 -122039714 + L1M5 LINE L1 5749 5829 -295 1 817 633 169 45 53 chr5 30497828 30497977 -122039282 - B1_Mur1 SINE Alu 0 148 3 1 817 1422 71 39 0 chr5 30498100 30498282 -122038977 - B2_Mm2 SINE B2 -6 189 1 1 817 755 172 19 13 chr5 30498294 30498453 -122038806 - B2_Mm2 SINE B2 -9 186 27 1 817 241 186 0 0 chr5 30498481 30498540 -122038719 - Lx5 LINE L1 0 7050 6992 1 817 252 26 26 0 chr5 30498540 30498578 -122038681 - B2_Mm2 SINE B2 -155 40 2 1 817 198 0 0 0 chr5 30499412 30499434 -122037825 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 1 817 423 279 86 32 chr5 30499537 30499716 -122037543 + B4A SINE B4 11 203 -89 1 817 1197 100 66 120 chr5 30499726 30500000 -122037259 - RLTR9C LTR ERVK 0 393 135 1 817 728 127 0 113 chr5 30500000 30500151 -122037108 - RLTR9C LTR ERVK -259 134 1 1 817 332 309 11 0 chr5 30500166 30500260 -122036999 - RSINE1 SINE B4 -69 96 2 2 817 419 295 0 0 chr5 30500701 30500813 -122036446 + PB1D9 SINE Alu 3 114 -6 3 817 1023 70 35 7 chr5 30500850 30500994 -122036265 + B1_Mus1 SINE Alu 1 148 0 4 817 252 59 0 0 chr5 30501086 30501120 -122036139 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 5 817 461 243 83 9 chr5 30501135 30501243 -122036016 - PB1D10 SINE Alu 0 117 2 6 817 813 215 29 86 chr5 30501593 30501802 -122035457 - B3A SINE B2 0 198 2 7 817 432 241 23 0 chr5 30501828 30501915 -122035344 - PB1D9 SINE Alu -5 115 27 8 817 662 122 189 8 chr5 30501976 30502106 -122035153 - B1_Mus2 SINE Alu -1 146 1 9 817 519 218 118 15 chr5 30502171 30502306 -122034953 - B1F1 SINE Alu 0 149 1 1 817 297 141 0 96 chr5 30502332 30502426 -122034833 - Lx5 LINE L1 -4 7046 6962 1 817 465 306 32 8 chr5 30502443 30502568 -122034691 - RSINE1 SINE B4 -37 128 1 1 817 435 295 32 24 chr5 30502568 30502679 -122034580 - B1F SINE Alu -35 114 3 1 817 453 285 0 41 chr5 30502795 30502934 -122034325 - B1F1 SINE Alu 0 149 17 1 817 808 263 23 0 chr5 30503164 30503339 -122033920 - B3A SINE B2 -19 179 1 1 817 265 281 122 20 chr5 30503706 30503804 -122033455 + B1F2 SINE Alu 3 110 -7 1 817 472 252 10 20 chr5 30503816 30503917 -122033342 - PB1D10 SINE Alu -4 113 14 1 817 882 236 35 0 chr5 30504158 30504357 -122032902 - B3 SINE B2 -9 207 2 1 817 23 33 0 0 chr5 30504860 30504890 -122032369 + AT_rich Low_complexity Low_complexity 1 30 0 1 817 367 253 0 62 chr5 30505450 30505530 -122031729 - RSINE1 SINE B4 -29 136 62 2 817 423 0 0 0 chr5 30505643 30505690 -122031569 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 817 251 245 0 19 chr5 30505705 30505759 -122031500 - ID4_ SINE ID -29 54 2 2 817 1135 123 73 0 chr5 30506363 30506542 -122030717 - B2_Mm2 SINE B2 -2 193 2 2 817 1173 55 7 0 chr5 30506583 30506728 -122030531 + B1_Mus2 SINE Alu 2 147 0 2 817 580 216 96 0 chr5 30507011 30507136 -122030123 + B1_Mur3 SINE Alu 1 137 -12 2 817 234 278 139 0 chr5 30507180 30507252 -122030007 - ID4_ SINE ID -1 82 1 2 817 613 132 161 24 chr5 30508192 30508316 -122028943 - B1_Mus1 SINE Alu 0 148 8 2 817 607 186 66 14 chr5 30508982 30509165 -122028094 - B3 SINE B2 0 195 9 2 817 455 244 95 147 chr5 30509179 30509410 -122027849 - MER20 DNA MER1_type 0 219 1 2 817 441 297 67 17 chr5 30509963 30510141 -122027118 - Lx6 LINE L1 -107 7353 7167 3 817 378 177 38 2 chr5 30510199 30510283 -122026976 + ID4_ SINE ID 4 92 -60 3 817 224 337 33 33 chr5 30510389 30510481 -122026778 - MIRb SINE MIR -63 205 114 3 817 1243 41 0 0 chr5 30511270 30511417 -122025842 - B1_Mus1 SINE Alu 0 148 2 3 817 301 247 0 61 chr5 30511784 30511866 -122025393 - ID4_ SINE ID -2 81 5 3 817 686 229 14 0 chr5 30512055 30512195 -122025064 + B1_Mur4 SINE Alu 1 142 -8 3 817 268 150 0 0 chr5 30512524 30512564 -122024695 + RSINE1 SINE B4 15 54 -111 3 817 1452 205 64 17 chr5 30512853 30513210 -122024049 - ORR1D1 LTR MaLR 0 374 1 3 817 363 247 34 0 chr5 30513248 30513337 -122023922 - PB1D10 SINE Alu -8 109 18 3 817 476 312 6 12 chr5 30513550 30513712 -122023547 + RSINE1 SINE B4 3 163 -2 3 817 313 277 12 0 chr5 30513984 30514067 -122023192 + L1M5 LINE L1 5434 5517 -647 4 817 234 167 40 27 chr5 30514072 30514146 -122023113 + T-rich Low_complexity Low_complexity 5 79 0 4 817 464 199 34 25 chr5 30514146 30514261 -122022998 - B1_Mur2 SINE Alu 0 149 2 4 817 438 241 118 24 chr5 30514280 30514450 -122022809 - B3 SINE B2 0 216 31 4 817 276 310 94 31 chr5 30514453 30514613 -122022646 + L1M5 LINE L1 5538 5707 -533 4 817 274 284 98 12 chr5 30514676 30514885 -122022374 + L1MD3 LINE L1 7325 7458 -537 4 817 625 186 214 41 chr5 30514923 30515119 -122022140 + L1MD3 LINE L1 7590 7819 -176 4 817 475 250 129 0 chr5 30515139 30515271 -122021988 + B1_Mur2 SINE Alu 1 149 0 4 817 287 221 44 0 chr5 30515276 30515344 -122021915 + ID4_ SINE ID 1 71 -12 4 817 325 247 12 0 chr5 30515389 30515478 -122021781 + L1M4 LINE L1 5065 5154 -992 4 817 1038 83 35 0 chr5 30515488 30515632 -122021627 + B1_Mur3 SINE Alu 1 149 0 4 817 281 300 108 0 chr5 30515639 30515759 -122021500 + L1M4 LINE L1 5274 5406 -768 4 817 555 237 0 71 chr5 30515763 30515890 -122021369 + B1_Mur4 SINE Alu 11 128 -22 4 817 205 237 0 0 chr5 30515890 30515928 -122021331 + polypurine Low_complexity Low_complexity 2 39 0 5 817 244 287 172 0 chr5 30516154 30516241 -122021018 - L2a LINE L2 -1 3425 3324 5 817 291 244 267 0 chr5 30516315 30516405 -122020854 - PB1D10 SINE Alu 0 117 4 5 817 1158 78 120 0 chr5 30516566 30516733 -122020526 - B2_Mm2 SINE B2 -8 187 1 5 817 295 258 197 32 chr5 30516744 30516813 -122020446 - L1MA8 LINE L1 -54 6237 6147 5 817 555 16 0 0 chr5 30516813 30516877 -122020382 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 817 295 258 197 32 chr5 30516877 30516995 -122020264 - L1MA8 LINE L1 -145 6146 6019 5 817 276 282 34 34 chr5 30517077 30517165 -122020094 - PB1D7 SINE Alu -10 110 23 5 817 511 243 18 9 chr5 30517417 30517529 -122019730 + PB1D9 SINE Alu 1 113 -7 5 817 402 197 16 19 chr5 30517564 30517673 -122019586 + B1F1 SINE Alu 40 147 -2 5 817 345 94 47 0 chr5 30517970 30518034 -122019225 - B2_Mm1a SINE B2 0 193 127 5 817 1316 102 17 0 chr5 30518069 30518246 -122019013 - B2_Mm2 SINE B2 -14 181 2 6 817 22 0 0 0 chr5 30518458 30518480 -122018779 + GC_rich Low_complexity Low_complexity 1 22 0 6 817 626 241 31 31 chr5 30518571 30518734 -122018525 - RSINE1 SINE B4 0 165 3 6 817 807 198 78 5 chr5 30519081 30519274 -122017985 + B3 SINE B2 1 207 -9 6 817 303 179 0 18 chr5 30519277 30519334 -122017925 + B3 SINE B2 151 206 -10 6 817 283 174 226 11 chr5 30519382 30519475 -122017784 - PB1D9 SINE Alu -7 113 1 6 817 222 218 0 0 chr5 30520235 30520290 -122016969 + T-rich Low_complexity Low_complexity 1 55 0 6 817 501 17 0 0 chr5 30520665 30520723 -122016536 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 817 348 227 22 33 chr5 30520739 30520830 -122016429 - PB1D10 SINE Alu -2 115 26 6 817 1171 74 0 0 chr5 30521019 30521167 -122016092 + B1_Mus1 SINE Alu 1 148 0 6 817 748 70 35 0 chr5 30521194 30521308 -122015951 + (GGAA)n Simple_repeat Simple_repeat 4 121 0 7 817 402 291 52 7 chr5 30521321 30521456 -122015803 + B1F1 SINE Alu 1 141 -8 7 817 585 265 61 7 chr5 30522386 30522534 -122014725 - RSINE1 SINE B4 -1 164 9 7 817 233 374 11 0 chr5 30522590 30522693 -122014566 - MIR SINE MIR -62 146 46 7 817 207 0 0 0 chr5 30525272 30525295 -122011964 + (CCA)n Simple_repeat Simple_repeat 3 25 0 7 817 285 209 0 0 chr5 30525453 30525520 -122011739 + (CAGG)n Simple_repeat Simple_repeat 2 68 0 7 817 667 229 30 50 chr5 30526349 30526551 -122010708 - B3A SINE B2 0 198 1 7 817 991 130 32 43 chr5 30526567 30526752 -122010507 - B2_Mm2 SINE B2 -12 183 1 7 817 1538 112 9 13 chr5 30527481 30527707 -122009552 + URR1B DNA MER1_type 1 225 0 7 817 600 282 19 6 chr5 30528038 30528195 -122009064 - ID_B1 SINE B4 -54 170 12 7 817 369 0 0 0 chr5 30528331 30528372 -122008887 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 817 222 329 12 12 chr5 30528544 30528627 -122008632 + GA-rich Low_complexity Low_complexity 2 84 0 8 817 492 240 0 28 chr5 30528631 30528738 -122008521 + PB1D7 SINE Alu 11 114 -6 8 817 207 0 0 0 chr5 30530421 30530444 -122006815 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 8 817 228 125 0 0 chr5 30530491 30530501 -122006758 + (T)n Simple_repeat Simple_repeat 1 10 0 8 817 1315 20 0 0 chr5 30530501 30530648 -122006611 - B1_Mm SINE Alu 0 147 1 8 817 228 125 0 0 chr5 30530648 30530685 -122006574 + (T)n Simple_repeat Simple_repeat 1 37 0 8 817 1186 61 0 13 chr5 30530685 30530834 -122006425 - B1_Mm SINE Alu 0 147 1 8 817 514 259 19 0 chr5 30531350 30531458 -122005801 + PB1D7 SINE Alu 10 119 -1 8 817 323 270 31 69 chr5 30531510 30531672 -122005587 + PB1 SINE Alu 1 149 0 8 817 405 236 11 0 chr5 30532655 30532744 -122004515 + RSINE1 SINE B4 2 91 -74 9 817 3795 93 10 68 chr5 30532817 30533437 -122003822 + RLTR6_Mm LTR ERV1 1 584 -70 9 817 952 153 7 0 chr5 30533456 30533600 -122003659 - B1_Mus2 SINE Alu -1 146 2 9 817 560 174 52 110 chr5 30533736 30533872 -122003387 - B1_Mur1 SINE Alu -1 148 21 9 817 838 194 95 20 chr5 30533904 30534104 -122003155 + B3 SINE B2 2 216 0 9 817 342 0 0 0 chr5 30534542 30534580 -122002679 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 817 270 0 0 0 chr5 30534580 30534609 -122002650 + (GA)n Simple_repeat Simple_repeat 1 30 0 9 817 180 0 0 0 chr5 30534765 30534785 -122002474 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 9 817 575 175 125 0 chr5 30534785 30534905 -122002354 - B1_Mur1 SINE Alu -13 136 2 9 817 201 121 0 0 chr5 30534956 30534989 -122002270 + (TCTCCC)n Simple_repeat Simple_repeat 3 35 0 9 817 360 0 0 0 chr5 30534991 30535031 -122002228 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 817 583 329 148 31 chr5 30535039 30535368 -122001891 - Lx8 LINE L1 -1586 5887 5554 1 817 1270 150 45 0 chr5 30535368 30535568 -122001691 - URR1B DNA MER1_type -16 209 1 1 817 332 232 49 0 chr5 30535581 30535663 -122001596 + L1M2 LINE L1 5153 5238 -905 1 817 670 79 11 0 chr5 30535671 30535760 -122001499 + B2_Mm2 SINE B2 1 90 -105 1 817 434 280 35 7 chr5 30535800 30535944 -122001315 + B1F2 SINE Alu 2 149 0 1 817 346 342 0 0 chr5 30536031 30536145 -122001114 + (TG)n Simple_repeat Simple_repeat 1 114 0 1 817 251 281 178 62 chr5 30536190 30536319 -122000940 - B1F2 SINE Alu 0 149 6 1 817 263 298 35 35 chr5 30536276 30536363 -122000896 - B4 SINE B4 -156 136 50 1 817 1597 38 5 0 chr5 30536423 30536608 -122000651 - B2_Mm1a SINE B2 -6 187 2 1 817 468 186 16 117 chr5 30536655 30536783 -122000476 - RSINE1 SINE B4 -44 121 7 1 817 681 251 30 12 chr5 30536814 30536979 -122000280 + B4A SINE B4 2 169 -123 1 817 1533 232 83 16 chr5 30537004 30537256 -122000003 - MTD LTR MaLR -19 400 120 1 817 315 0 0 0 chr5 30537256 30537291 -121999968 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 817 1026 114 42 42 chr5 30537301 30537493 -121999766 + B2_Mm2 SINE B2 3 194 -1 1 817 1533 232 83 16 chr5 30537493 30537601 -121999658 - MTD LTR MaLR -306 113 5 1 817 279 266 98 21 chr5 30538103 30538222 -121999037 + PB1D10 SINE Alu 1 128 -21 1 817 2280 92 6 9 chr5 30538329 30538648 -121998611 + ORR1A3 LTR MaLR 1 318 -8 1 817 363 291 0 43 chr5 30538920 30539035 -121998224 + PB1D10 SINE Alu 4 113 -4 1 817 666 323 112 11 chr5 30539197 30539457 -121997802 - MER21B LTR ERV1 -548 315 30 1 817 198 0 0 0 chr5 30539472 30539494 -121997765 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 817 204 40 0 0 chr5 30539496 30539521 -121997738 + (CATG)n Simple_repeat Simple_repeat 4 28 0 1 818 687 208 0 46 chr5 30539942 30540093 -121997166 + B1_Mur2 SINE Alu 5 148 -1 1 818 2339 88 24 45 chr5 30540161 30540217 -121997042 - ORR1A2 LTR MaLR 0 327 286 1 818 1672 36 0 0 chr5 30540217 30540410 -121996849 - B2_Mm1a SINE B2 0 193 1 1 818 2339 88 24 45 chr5 30540410 30540687 -121996572 - ORR1A2 LTR MaLR -42 285 1 1 818 426 286 57 7 chr5 30541110 30541251 -121996008 - L1M3 LINE L1 -541 5639 5492 1 818 495 287 30 43 chr5 30541313 30541477 -121995782 + RSINE1 SINE B4 4 165 0 1 818 1259 318 113 6 chr5 30542089 30542576 -121994683 - MER21B LTR ERV1 -227 636 98 1 818 280 292 42 0 chr5 30542939 30543011 -121994248 + PB1D9 SINE Alu 33 107 -13 1 818 641 191 35 49 chr5 30543026 30543169 -121994090 + B1_Mus2 SINE Alu 1 141 -6 1 818 389 102 11 54 chr5 30543344 30543437 -121993822 + (TG)n Simple_repeat Simple_repeat 2 90 0 1 818 336 235 162 29 chr5 30543632 30543737 -121993522 - PB1D7 SINE Alu -1 119 1 1 818 428 287 17 0 chr5 30543775 30543890 -121993369 - PB1D10 SINE Alu 0 117 1 1 818 1145 56 21 0 chr5 30543984 30544127 -121993132 - B1_Mm SINE Alu -1 146 1 1 818 749 214 103 6 chr5 30544139 30544313 -121992946 - B3A SINE B2 -3 195 5 1 818 2325 95 9 12 chr5 30544742 30545071 -121992188 + ORR1A4 LTR MaLR 2 329 0 1 818 1178 50 0 0 chr5 30545474 30545613 -121991646 + B1_Mus1 SINE Alu 1 139 -9 1 818 837 0 0 0 chr5 30545655 30545748 -121991511 + (TATATG)n Simple_repeat Simple_repeat 6 98 0 1 818 362 226 213 11 chr5 30545768 30545862 -121991397 - RSINE1 SINE B4 -42 123 11 1 818 329 200 58 167 chr5 30546872 30547028 -121990231 + B1F SINE Alu 1 139 -10 1 818 249 263 35 0 chr5 30548147 30548204 -121989055 + ID4 SINE ID 17 75 -8 1 818 212 304 0 18 chr5 30548364 30548421 -121988838 - ID4_ SINE ID -5 78 23 1 818 265 284 0 82 chr5 30548462 30548535 -121988724 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 1 818 297 251 122 32 chr5 30548587 30548710 -121988549 - B1F SINE Alu -13 136 12 1 818 236 231 0 0 chr5 30548992 30549031 -121988228 + ID SINE ID 32 70 -154 1 818 2517 65 6 27 chr5 30549584 30549918 -121987341 - IAPLTR2b LTR ERVK 0 327 1 1 818 56147 25 15 11 chr5 30549920 30556362 -121980897 - IAPEz-int LTR ERVK -2 6479 9 1 818 2513 62 6 27 chr5 30556363 30556697 -121980562 - IAPLTR2b LTR ERVK 0 327 1 1 818 492 280 0 29 chr5 30556708 30556844 -121980415 + RSINE1 SINE B4 3 134 -31 1 818 751 210 38 22 chr5 30557074 30557259 -121980000 + B3A SINE B2 1 188 -10 1 818 212 171 24 0 chr5 30557323 30557364 -121979895 + PB1D10 SINE Alu 47 88 -29 1 818 225 273 0 57 chr5 30557361 30557431 -121979828 - PB1D7 SINE Alu -54 66 1 1 818 235 152 41 52 chr5 30557433 30557530 -121979729 + Lx5 LINE L1 6952 7047 -3 1 818 918 171 126 16 chr5 30557585 30557775 -121979484 - B3 SINE B2 -4 212 2 1 818 402 230 24 37 chr5 30557995 30558117 -121979142 + B1F1 SINE Alu 1 145 -4 1 818 31 44 0 0 chr5 30559386 30559431 -121977828 + GC_rich Low_complexity Low_complexity 1 45 0 1 818 1136 62 0 7 chr5 30561924 30562071 -121975188 - B1_Mus1 SINE Alu -1 147 2 1 818 204 304 153 48 chr5 30562418 30562836 -121974423 - L2c LINE L2 -1 3386 2925 1 818 207 162 0 0 chr5 30562968 30563005 -121974254 + (CCAA)n Simple_repeat Simple_repeat 1 37 0 1 818 331 279 45 0 chr5 30563220 30563331 -121973928 - PB1D10 SINE Alu 0 117 2 1 818 248 275 125 37 chr5 30563423 30563559 -121973700 + Charlie8 DNA MER1_type 92 239 -2189 1 818 484 224 159 0 chr5 30563563 30563670 -121973589 + B1_Mur2 SINE Alu 7 130 -19 1 818 508 267 0 0 chr5 30564054 30564170 -121973089 + PB1D10 SINE Alu 1 116 -1 1 818 261 0 0 0 chr5 30564313 30564342 -121972917 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1 818 1099 67 0 0 chr5 30564342 30564476 -121972783 - B1_Mus1 SINE Alu -13 135 2 1 818 242 304 118 11 chr5 30564698 30564791 -121972468 + PB1D10 SINE Alu 3 105 -12 1 818 775 276 92 99 chr5 30565249 30565793 -121971466 - MER44B DNA MER2_type -2 548 9 1 818 281 216 0 0 chr5 30566089 30566140 -121971119 - B4 SINE B4 -197 95 45 1 818 405 222 81 0 chr5 30566186 30566285 -121970974 + PB1D9 SINE Alu 7 113 -7 1 818 730 179 13 19 chr5 30566325 30566479 -121970780 + MTD LTR MaLR 2 154 -265 1 818 278 304 13 0 chr5 30567888 30567967 -121969292 - ID2 SINE ID 0 83 4 1 818 1419 73 10 10 chr5 30568169 30568362 -121968897 + B2_Mm1a SINE B2 1 193 0 1 818 611 275 30 55 chr5 30568366 30568566 -121968693 + B4 SINE B4 81 275 -17 1 818 238 301 79 43 chr5 30568582 30568721 -121968538 - MLT1F2 LTR MaLR -405 155 12 1 818 968 195 25 15 chr5 30568791 30568989 -121968270 - URR1A DNA MER1_type 0 226 27 1 818 882 224 215 10 chr5 30569184 30569491 -121967768 - MTE2b LTR MaLR 0 379 10 1 818 261 0 0 0 chr5 30569744 30569773 -121967486 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 818 1205 55 0 0 chr5 30569773 30569919 -121967340 - B1_Mus2 SINE Alu -1 146 1 1 818 195 42 0 0 chr5 30569928 30569952 -121967307 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 818 552 150 122 30 chr5 30570074 30570122 -121967137 + B1_Mm SINE Alu 5 52 -95 1 818 477 0 0 0 chr5 30570122 30570175 -121967084 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 818 552 150 122 30 chr5 30570175 30570257 -121967002 + B1_Mm SINE Alu 53 147 0 1 818 294 344 50 19 chr5 30571469 30571629 -121965630 + MER58B DNA MER1_type 177 341 0 1 818 549 30 460 0 chr5 30572213 30572313 -121964946 + B1_Mus2 SINE Alu 1 146 -1 1 818 269 167 11 97 chr5 30573334 30573427 -121963832 + RLTR25B LTR ERVK 424 508 -520 1 818 500 122 111 10 chr5 30573352 30573451 -121963808 + B1_Mus1 SINE Alu 40 148 0 1 818 949 191 33 52 chr5 30574284 30574494 -121962765 - B3 SINE B2 -8 208 3 1 818 258 244 24 11 chr5 30574515 30574597 -121962662 - PB1 SINE Alu -33 84 6 1 818 408 237 20 10 chr5 30575345 30575443 -121961816 + ID_B1 SINE B4 81 179 -45 1 818 285 188 288 0 chr5 30575780 30575860 -121961399 - PB1 SINE Alu -7 120 18 1 818 2088 233 94 124 chr5 30575919 30576352 -121960907 + RCHARR1 DNA MER1_type 1 479 -495 1 818 502 250 10 0 chr5 30576352 30576452 -121960807 + PB1D9 SINE Alu 3 103 -17 1 818 2088 233 94 124 chr5 30576452 30576472 -121960787 + RCHARR1 DNA MER1_type 480 480 -494 1 818 565 264 110 38 chr5 30576472 30576545 -121960714 + ID SINE ID 1 68 -156 1 818 180 0 0 0 chr5 30576545 30576565 -121960694 + (CACAG)n Simple_repeat Simple_repeat 3 22 0 1 818 565 264 110 38 chr5 30576565 30576700 -121960559 + ID_B1 SINE B4 69 223 -1 1 818 2088 233 94 124 chr5 30576700 30576725 -121960534 + RCHARR1 DNA MER1_type 480 480 -494 1 818 560 260 42 42 chr5 30576725 30576914 -121960345 + B3A SINE B2 4 192 -6 1 818 2088 233 94 124 chr5 30576914 30577246 -121960013 + RCHARR1 DNA MER1_type 480 795 -179 1 818 635 146 372 13 chr5 30577246 30577399 -121959860 - B3 SINE B2 -4 212 5 1 818 2088 233 94 124 chr5 30577399 30577534 -121959725 + RCHARR1 DNA MER1_type 796 920 -54 1 818 23 86 0 0 chr5 30577581 30577639 -121959620 + AT_rich Low_complexity Low_complexity 1 58 0 1 818 306 243 43 35 chr5 30577968 30578083 -121959176 - L1_Mm LINE L1 -15 5868 5753 1 818 33 43 0 0 chr5 30578086 30578133 -121959126 + AT_rich Low_complexity Low_complexity 1 47 0 1 818 347 155 17 17 chr5 30578178 30578259 -121959000 - RLTR9A2 LTR ERVK -96 324 222 1 818 415 210 151 0 chr5 30578261 30578380 -121958879 - B1F1 SINE Alu -9 140 4 1 818 720 204 21 7 chr5 30578443 30578586 -121958673 - B1_Mur2 SINE Alu 0 149 5 1 818 1437 124 127 25 chr5 30578665 30578980 -121958279 - ORR1B1 LTR MaLR -7 387 41 1 818 314 305 51 73 chr5 30579809 30579986 -121957273 + MER58B DNA MER1_type 169 341 0 1 818 183 42 0 0 chr5 30580787 30580811 -121956448 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 2 818 607 234 234 0 chr5 30581348 30581523 -121955736 - B3 SINE B2 0 216 1 2 818 854 106 8 0 chr5 30581918 30582050 -121955209 + (TTTC)n Simple_repeat Simple_repeat 4 136 0 2 818 584 210 150 19 chr5 30582205 30582365 -121954894 + B3A SINE B2 2 182 -16 2 818 311 60 20 0 chr5 30582365 30582415 -121954844 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 818 26 50 0 0 chr5 30582431 30582471 -121954788 + AT_rich Low_complexity Low_complexity 1 40 0 2 818 847 234 5 26 chr5 30582988 30583181 -121954078 + B3 SINE B2 1 189 -27 2 818 824 155 6 51 chr5 30583190 30583346 -121953913 + B1_Mur4 SINE Alu 1 149 -1 2 818 27 29 0 0 chr5 30583374 30583408 -121953851 + AT_rich Low_complexity Low_complexity 1 34 0 2 818 266 288 0 0 chr5 30583456 30583529 -121953730 + ID4 SINE ID 2 74 -9 2 818 532 220 27 9 chr5 30584923 30585033 -121952226 - PB1D10 SINE Alu -5 112 1 2 818 248 258 214 16 chr5 30586047 30586173 -121951086 - RSINE1 SINE B4 -12 153 3 2 818 237 323 137 19 chr5 30586354 30586515 -121950744 - L1MC LINE L1 -2033 5849 5670 2 818 192 77 0 0 chr5 30586951 30586977 -121950282 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 818 791 192 145 0 chr5 30586978 30587150 -121950109 - B3 SINE B2 -19 197 1 2 818 775 250 103 5 chr5 30587178 30587363 -121949896 - B3 SINE B2 -9 207 5 2 818 288 0 0 0 chr5 30587460 30587492 -121949767 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 818 321 215 73 31 chr5 30588096 30588192 -121949067 - B1F SINE Alu -6 143 44 2 818 227 303 86 68 chr5 30589303 30589420 -121947839 - MIR SINE MIR -105 157 39 2 818 1761 133 142 4 chr5 30590423 30590784 -121946475 - RMER16 LTR ERVK -1 532 1 2 818 1103 197 109 15 chr5 30591339 30591679 -121945580 - MTEb LTR MaLR 0 379 8 2 818 180 0 0 0 chr5 30592292 30592312 -121944947 + (T)n Simple_repeat Simple_repeat 1 20 0 2 818 217 290 37 83 chr5 30592464 30592573 -121944686 + RSINE1 SINE B4 62 165 0 2 818 235 283 233 0 chr5 30592604 30592724 -121944535 + RSINE1 SINE B4 2 149 -16 2 818 854 161 100 21 chr5 30592750 30592940 -121944319 + B3 SINE B2 1 205 -11 2 818 23 0 0 0 chr5 30593714 30593737 -121943522 + AT_rich Low_complexity Low_complexity 1 23 0 2 818 186 71 0 0 chr5 30594947 30594975 -121942284 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2 818 37 62 0 0 chr5 30598915 30598980 -121938279 + AT_rich Low_complexity Low_complexity 1 65 0 2 818 1343 70 21 21 chr5 30599156 30599347 -121937912 + B2_Mm1t SINE B2 1 191 -2 2 818 679 195 166 11 chr5 30599694 30599881 -121937378 - ID_B1 SINE B4 -6 218 3 2 818 340 283 42 28 chr5 30600009 30600151 -121937108 - RSINE1 SINE B4 -19 146 3 2 818 21 57 0 0 chr5 30600193 30600228 -121937031 + AT_rich Low_complexity Low_complexity 1 35 0 2 818 279 152 22 0 chr5 30600280 30600326 -121936933 - Lx4A LINE L1 -275 6783 6737 2 818 700 130 204 49 chr5 30600312 30600474 -121936785 + Lx4A LINE L1 6870 7056 -2 2 818 352 282 22 37 chr5 30600655 30600791 -121936468 + B1F1 SINE Alu 1 134 -15 2 818 180 125 0 0 chr5 30601696 30601728 -121935531 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 818 2079 183 71 47 chr5 30601751 30602243 -121935016 + RMER20A LTR ERVK 11 514 -2 2 818 443 276 110 0 chr5 30602244 30602371 -121934888 - B3 SINE B2 -72 144 4 2 818 271 320 12 49 chr5 30602398 30602480 -121934779 - ID4 SINE ID -4 79 1 2 818 609 14 0 0 chr5 30602608 30602678 -121934581 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 818 567 0 0 0 chr5 30602687 30602750 -121934509 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2 818 210 219 0 30 chr5 30602797 30602863 -121934396 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 818 1457 163 58 63 chr5 30602863 30603211 -121934048 - MT2B LTR ERVL -59 542 197 2 818 267 53 0 0 chr5 30603230 30603268 -121933991 - MERVL-int LTR ERVL 0 5485 5448 2 818 275 214 86 43 chr5 30603268 30603361 -121933898 - ORR1A3-int LTR MaLR -1323 640 544 2 818 9073 147 72 5 chr5 30603361 30604848 -121932411 - MERVL_2A-int LTR ERVL -153 5608 4022 2 818 4975 118 50 1 chr5 30604948 30605667 -121931592 - MERVL_2A-int LTR ERVL -1932 3829 3076 2 818 3141 173 68 2 chr5 30605674 30606237 -121931022 - MERVL_2A-int LTR ERVL -3664 2097 1498 2 818 1158 49 14 0 chr5 30606485 30606629 -121930630 - B1_Mm SINE Alu 0 147 2 2 818 291 179 0 0 chr5 30606629 30606685 -121930574 - MERVL_2A-int LTR ERVL -4429 1332 1277 2 818 228 292 0 0 chr5 30606690 30606738 -121930521 + ID4_ SINE ID 34 81 -2 2 818 318 234 83 21 chr5 30606763 30606859 -121930400 - PB1D10 SINE Alu -12 105 4 2 818 203 175 0 0 chr5 30606871 30606911 -121930348 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2 818 425 271 66 46 chr5 30607192 30607343 -121929916 - RSINE1 SINE B4 -10 155 2 2 818 369 0 0 0 chr5 30608220 30608261 -121928998 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 818 316 158 0 81 chr5 30608315 30608377 -121928882 + B1_Mur2 SINE Alu 93 149 0 2 818 30 0 0 0 chr5 30608547 30608577 -121928682 + AT_rich Low_complexity Low_complexity 1 30 0 2 818 534 219 8 48 chr5 30608577 30608702 -121928557 + PB1D9 SINE Alu 1 120 0 2 818 313 352 0 0 chr5 30608783 30608905 -121928354 - HERV16-int LTR ERVL -3209 2552 2431 2 818 413 322 73 0 chr5 30609145 30609350 -121927909 - HERV16-int LTR ERVL -3049 1947 1728 2 818 1347 105 11 0 chr5 30609519 30609710 -121927549 + B2_Mm1t SINE B2 1 193 0 2 818 271 131 29 14 chr5 30609714 30609728 -121927531 + (CAAA)n Simple_repeat Simple_repeat 2 15 0 2 818 1147 68 7 0 chr5 30609728 30609874 -121927385 + B1_Mus1 SINE Alu 2 148 0 2 818 271 131 29 14 chr5 30609874 30609929 -121927330 + (CAAA)n Simple_repeat Simple_repeat 4 59 0 2 818 901 156 0 0 chr5 30610149 30610284 -121926975 + B1_Mus2 SINE Alu 2 136 -11 2 818 438 20 0 0 chr5 30610641 30610692 -121926567 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 818 22 0 0 0 chr5 30610706 30610728 -121926531 + AT_rich Low_complexity Low_complexity 1 22 0 2 818 662 164 22 15 chr5 30610732 30610868 -121926391 + B1F2 SINE Alu 6 142 -7 2 818 1069 239 5 0 chr5 30610892 30611097 -121926162 + B3 SINE B2 2 207 -9 2 818 450 0 0 0 chr5 30611097 30611147 -121926112 + (TAA)n Simple_repeat Simple_repeat 3 52 0 2 818 319 317 0 38 chr5 30611237 30611322 -121925937 + polypurine Low_complexity Low_complexity 3 84 0 2 818 3312 122 59 136 chr5 30611322 30612070 -121925189 + RMER6C LTR ERVK 1 690 0 2 818 319 317 0 38 chr5 30612070 30612089 -121925170 + polypurine Low_complexity Low_complexity 85 103 0 2 818 437 297 0 0 chr5 30612173 30612284 -121924975 + PB1D10 SINE Alu 1 111 -6 2 818 211 283 15 104 chr5 30612303 30612370 -121924889 - B4A SINE B4 -189 103 43 2 818 1010 214 43 5 chr5 30612418 30612625 -121924634 - B3 SINE B2 0 216 2 2 818 375 320 0 0 chr5 30612627 30612730 -121924529 - MER33 DNA MER1_type -221 103 1 2 818 206 219 0 24 chr5 30613308 30613350 -121923909 + polypyrimidine Low_complexity Low_complexity 1 41 0 2 818 510 185 0 11 chr5 30613747 30613849 -121923410 - PB1D7 SINE Alu 0 120 22 2 818 537 308 62 0 chr5 30614584 30614730 -121922529 + RSINE1 SINE B4 3 157 -8 2 818 769 234 64 16 chr5 30614745 30614932 -121922327 - B3 SINE B2 -19 197 2 2 818 543 293 36 62 chr5 30614977 30615170 -121922089 + B3A SINE B2 1 188 -10 2 818 561 235 8 17 chr5 30615729 30615846 -121921413 - ID_B1 SINE B4 -1 223 108 2 818 248 291 95 78 chr5 30615736 30615915 -121921344 - RLTR25B LTR ERVK -493 535 354 2 818 337 127 0 68 chr5 30615934 30615993 -121921266 + B3A SINE B2 1 55 -143 2 818 455 33 16 0 chr5 30641999 30642060 -121895199 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 818 975 67 45 0 chr5 30642071 30642205 -121895054 + B2_Mm2 SINE B2 49 188 -7 2 818 2090 156 34 99 chr5 30642457 30642806 -121894453 + MTC LTR MaLR 1 329 -92 2 818 1194 56 7 0 chr5 30642806 30642949 -121894310 - B1_Mm SINE Alu 0 147 4 2 818 2090 156 34 99 chr5 30642949 30643041 -121894218 + MTC LTR MaLR 330 413 -8 2 818 477 269 186 4 chr5 30643442 30643672 -121893587 - MTE2a LTR MaLR -2 377 3 2 818 716 129 63 16 chr5 30643799 30643925 -121893334 - B1_Mur4 SINE Alu -2 148 17 2 818 264 246 33 139 chr5 30643834 30643985 -121893274 - MT2B2 LTR ERVL -327 257 123 2 818 260 263 39 69 chr5 30644344 30644446 -121892813 + B4A SINE B4 2 100 -192 2 818 865 138 20 27 chr5 30644485 30644634 -121892625 + B1_Mur3 SINE Alu 2 149 0 2 818 330 123 0 34 chr5 30644635 30644694 -121892565 - 4.5SRNA scRNA scRNA 0 94 38 2 818 449 188 35 12 chr5 30644643 30644729 -121892530 - B1_Mur2 SINE Alu -57 92 5 2 818 207 0 0 0 chr5 30644729 30644752 -121892507 + (TC)n Simple_repeat Simple_repeat 1 23 0 2 818 951 101 0 0 chr5 30646095 30646224 -121891035 + B1_Mur4 SINE Alu 22 150 0 2 818 364 299 71 71 chr5 30646440 30646462 -121890797 + B4 SINE B4 70 134 -158 2 818 422 252 35 35 chr5 30646462 30646577 -121890682 + B1F SINE Alu 1 115 -34 2 818 364 299 71 71 chr5 30646577 30646609 -121890650 + B4 SINE B4 135 238 -54 2 818 261 353 82 38 chr5 30646666 30646825 -121890434 - MIRc SINE MIR -60 208 40 2 818 674 253 72 0 chr5 30646947 30647113 -121890146 - MTE2b LTR MaLR 0 379 202 2 818 226 317 0 0 chr5 30647224 30647284 -121889975 - MTE2b LTR MaLR -171 208 149 2 818 186 43 0 0 chr5 30647310 30647333 -121889926 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 2 818 263 329 14 0 chr5 30647334 30647404 -121889855 - MTE2b LTR MaLR -308 71 1 2 818 372 217 102 57 chr5 30647552 30647640 -121889619 + RSINE1 SINE B4 72 163 -2 2 818 322 247 0 66 chr5 30648036 30648057 -121889202 + ID SINE ID 67 81 -143 2 818 402 220 33 0 chr5 30648057 30648148 -121889111 + PB1D10 SINE Alu 1 94 -23 2 818 232 276 11 11 chr5 30648268 30648356 -121888903 - L1M4 LINE L1 -944 5196 5109 3 818 379 306 49 8 chr5 30648386 30648508 -121888751 - L1M4 LINE L1 -1096 5050 4924 3 818 868 139 6 6 chr5 30648529 30648688 -121888571 + CT-rich Low_complexity Low_complexity 2 160 0 3 818 1002 282 18 9 chr5 30648690 30648912 -121888347 - ID_B1 SINE B4 0 224 1 3 818 305 267 21 18 chr5 30648974 30649086 -121888173 - ID_B1 SINE B4 -96 196 80 3 818 251 317 24 0 chr5 30649081 30649163 -121888096 - B1F SINE Alu -1 148 65 3 818 243 0 0 0 chr5 30649569 30649596 -121887663 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 3 818 222 322 159 33 chr5 30649606 30649757 -121887502 - L2a LINE L2 -27 3399 3230 3 818 339 217 69 167 chr5 30649782 30649998 -121887261 - MTEb LTR MaLR -39 340 146 3 818 988 161 124 5 chr5 30650510 30650703 -121886556 + URR1A DNA MER1_type 9 224 -2 3 818 478 246 130 25 chr5 30651315 30651515 -121885744 - ID_B1 SINE B4 -2 222 2 3 818 21 0 0 0 chr5 30651544 30651565 -121885694 + AT_rich Low_complexity Low_complexity 1 21 0 3 818 436 235 148 0 chr5 30651565 30651680 -121885579 - B1F2 SINE Alu -7 142 11 3 818 1252 47 0 0 chr5 30651690 30651838 -121885421 - B1_Mus1 SINE Alu 0 148 1 3 818 937 119 77 28 chr5 30651865 30651999 -121885260 + B2_Mm2 SINE B2 1 144 -51 3 818 798 41 0 0 chr5 30651999 30652097 -121885162 + (GAAA)n Simple_repeat Simple_repeat 4 101 0 3 818 937 119 77 28 chr5 30652097 30652144 -121885115 + B2_Mm2 SINE B2 145 191 -4 3 818 377 227 250 62 chr5 30652307 30652467 -121884792 - B3A SINE B2 -8 190 1 3 818 685 294 48 75 chr5 30652933 30653161 -121884098 - ID_B1 SINE B4 0 224 3 3 818 216 0 0 0 chr5 30653212 30653236 -121884023 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 818 963 133 0 15 chr5 30653242 30653379 -121883880 - B1_Mur3 SINE Alu -14 135 1 3 818 459 40 27 13 chr5 30653403 30653478 -121883781 + (TCTA)n Simple_repeat Simple_repeat 4 79 0 3 818 264 348 0 0 chr5 30653483 30653552 -121883707 - ID4 SINE ID -14 69 1 3 818 332 232 110 10 chr5 30653560 30653660 -121883599 - PB1D10 SINE Alu -7 110 1 3 818 622 179 32 16 chr5 30653797 30653922 -121883337 + ID_B1 SINE B4 95 221 -3 3 818 409 288 111 12 chr5 30654465 30654627 -121882632 + B3A SINE B2 11 188 -10 3 818 2226 77 3 138 chr5 30654837 30654907 -121882352 - ORR1A3 LTR MaLR 0 326 280 3 818 1256 48 0 0 chr5 30654907 30655053 -121882206 - B1_Mus2 SINE Alu 0 147 2 3 818 2226 77 3 138 chr5 30655053 30655359 -121881900 - ORR1A3 LTR MaLR -47 279 1 3 818 349 172 0 0 chr5 30656213 30656271 -121880988 + B1_Mur4 SINE Alu 2 59 -91 3 818 303 303 9 0 chr5 30656273 30656382 -121880877 + GA-rich Low_complexity Low_complexity 2 111 0 3 818 242 173 101 51 chr5 30656383 30656462 -121880797 + RLTR25B LTR ERVK 427 509 -519 3 818 714 128 0 0 chr5 30656395 30656504 -121880755 + B1_Mur3 SINE Alu 40 148 -1 3 818 534 70 0 0 chr5 30656518 30656589 -121880670 + (GGGGA)n Simple_repeat Simple_repeat 5 75 0 3 818 455 337 5 70 chr5 30656624 30656692 -121880567 + ID_B1 SINE B4 28 199 -24 3 818 595 250 0 0 chr5 30656692 30656808 -121880451 + B1F SINE Alu 6 121 -28 3 818 750 154 0 0 chr5 30657057 30657267 -121879992 + (TG)n Simple_repeat Simple_repeat 1 210 0 3 818 219 204 0 0 chr5 30657320 30657374 -121879885 + (TATG)n Simple_repeat Simple_repeat 3 56 0 3 818 243 191 44 26 chr5 30657614 30657727 -121879532 + (TGGG)n Simple_repeat Simple_repeat 4 118 0 3 818 236 293 26 124 chr5 30658663 30658776 -121878483 + RLTR44B LTR ERVK 178 279 -170 3 818 603 211 134 8 chr5 30658885 30659019 -121878240 + RSINE1 SINE B4 3 153 -12 3 818 227 219 45 30 chr5 30659414 30659480 -121877779 - B1_Mur1 SINE Alu -16 133 67 3 818 403 191 167 21 chr5 30659421 30659517 -121877742 - ID_B1 SINE B4 -21 203 94 3 818 369 0 0 0 chr5 30659654 30659695 -121877564 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 3 818 829 244 12 12 chr5 30659698 30659860 -121877399 - RSINE1 SINE B4 0 165 4 3 818 203 262 0 0 chr5 30659915 30659976 -121877283 + T-rich Low_complexity Low_complexity 1 61 0 3 818 795 231 46 6 chr5 30659990 30660164 -121877095 - B3A SINE B2 -16 182 2 3 818 629 121 81 0 chr5 30660208 30660307 -121876952 - B2_Mm2 SINE B2 -88 107 1 3 818 308 333 32 0 chr5 30660339 30660462 -121876797 - Tigger15a DNA TcMar -405 310 184 3 818 188 135 27 0 chr5 30663005 30663042 -121874217 + GA-rich Low_complexity Low_complexity 1 38 0 3 818 526 279 37 0 chr5 30663046 30663182 -121874077 + ID_B1 SINE B4 2 142 -82 3 818 339 295 0 0 chr5 30663311 30663389 -121873870 - PB1D10 SINE Alu -37 80 3 3 818 719 157 8 0 chr5 30663420 30663541 -121873718 - B1_Mus1 SINE Alu -9 139 18 3 818 475 119 21 21 chr5 30663796 30663890 -121873369 + CT-rich Low_complexity Low_complexity 4 97 0 3 818 192 224 0 0 chr5 30663905 30663972 -121873287 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 3 818 1163 110 6 3 chr5 30663988 30664331 -121872928 + (TTTC)n Simple_repeat Simple_repeat 1 343 0 3 818 629 255 21 7 chr5 30664333 30664475 -121872784 - ID_B1 SINE B4 -8 216 73 3 818 187 242 58 43 chr5 30664691 30664760 -121872499 + MER5A DNA MER1_type 27 96 -93 3 818 2268 155 104 5 chr5 30664799 30665182 -121872077 - MTC LTR MaLR 0 421 1 3 818 991 158 9 11 chr5 30665645 30666180 -121871079 + (CATA)n Simple_repeat Simple_repeat 1 533 0 3 818 651 248 107 32 chr5 30666887 30667131 -121870128 - ID_B1 SINE B4 -34 258 10 3 818 393 264 46 0 chr5 30667163 30667250 -121870009 - B1F SINE Alu -58 91 1 3 818 352 318 93 20 chr5 30667289 30667440 -121869819 - RSINE1 SINE B4 -1 164 3 3 818 671 90 10 0 chr5 30667473 30667573 -121869686 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 3 818 703 95 68 17 chr5 30667576 30667694 -121869565 - B1_Mm SINE Alu -2 145 22 3 818 555 16 0 0 chr5 30667775 30667839 -121869420 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 3 818 1146 44 7 0 chr5 30667839 30667974 -121869285 - B1_Mus2 SINE Alu -10 137 2 3 818 201 211 0 0 chr5 30670688 30670705 -121866554 + polypyrimidine Low_complexity Low_complexity 22 38 0 3 102 1359 67 0 0 chr5 30670705 30670884 -121866375 + (TCCC)n Simple_repeat Simple_repeat 1 179 0 3 819 201 211 0 0 chr5 30670884 30670904 -121866355 + polypyrimidine Low_complexity Low_complexity 2 21 0 3 819 757 298 9 5 chr5 30670904 30671123 -121866136 - ID_B1 SINE B4 -2 222 3 3 819 725 237 94 20 chr5 30671423 30671625 -121865634 - B4A SINE B4 -75 217 1 3 819 218 285 89 0 chr5 30672095 30672195 -121865064 + MIR SINE MIR 11 119 -149 3 819 21 0 0 0 chr5 30672199 30672220 -121865039 + AT_rich Low_complexity Low_complexity 1 21 0 3 819 227 325 16 33 chr5 30672281 30672402 -121864857 + (TG)n Simple_repeat Simple_repeat 2 120 0 3 819 347 242 0 0 chr5 30675075 30675152 -121862107 + ID4_ SINE ID 10 86 -66 3 819 189 0 0 0 chr5 30675464 30675485 -121861774 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 819 828 131 23 11 chr5 30675519 30675696 -121861563 + G-rich Low_complexity Low_complexity 1 179 0 3 819 403 299 20 33 chr5 30676841 30676993 -121860266 + MIRb SINE MIR 2 151 -117 3 819 228 216 0 19 chr5 30678855 30678907 -121858352 + MamRep38 DNA hAT 95 145 -150 3 819 470 268 49 90 chr5 30679768 30679981 -121857278 + B4A SINE B4 6 198 -26 3 819 233 261 152 0 chr5 30680027 30680119 -121857140 + B4 SINE B4 165 270 -22 3 819 609 205 3 0 chr5 30680166 30680495 -121856764 + (CA)n Simple_repeat Simple_repeat 1 330 0 3 819 360 247 0 0 chr5 30680514 30680684 -121856575 + (CA)n Simple_repeat Simple_repeat 2 171 0 3 819 207 0 0 0 chr5 30682614 30682637 -121854622 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 3 819 247 217 154 24 chr5 30683581 30683704 -121853555 + MIR3 SINE MIR 10 148 -60 3 819 329 166 9 0 chr5 30689440 30689508 -121847751 + B1_Mur2 SINE Alu 51 120 0 3 819 642 300 40 56 chr5 30689539 30689749 -121847510 - B4 SINE B4 0 292 86 3 819 291 85 0 0 chr5 30689749 30689796 -121847463 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 3 819 642 300 40 56 chr5 30689796 30689836 -121847423 - B4 SINE B4 -207 85 46 3 819 390 329 65 24 chr5 30689899 30690189 -121847070 - L1MB7 LINE L1 -21 6163 5862 3 819 210 233 0 0 chr5 30690825 30690885 -121846374 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 819 477 80 0 0 chr5 30691345 30691420 -121845839 + (TCTCTG)n Simple_repeat Simple_repeat 3 77 0 3 819 261 0 0 0 chr5 30691420 30691448 -121845811 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 819 181 325 70 44 chr5 30692790 30692948 -121844311 + L2c LINE L2 3059 3220 -167 3 819 508 151 0 0 chr5 30694321 30694407 -121842852 - B1_Mus1 SINE Alu -58 90 5 3 819 357 127 0 0 chr5 30694710 30694759 -121842500 + (T)n Simple_repeat Simple_repeat 1 49 0 3 819 1285 27 0 0 chr5 30694759 30694906 -121842353 - B1_Mus2 SINE Alu 0 147 1 3 819 357 127 0 0 chr5 30694906 30694919 -121842340 + (T)n Simple_repeat Simple_repeat 1 13 0 3 819 765 257 29 0 chr5 30694938 30695109 -121842150 - ID_B1 SINE B4 -47 177 2 3 819 1362 166 37 0 chr5 30695540 30695757 -121841502 - URR1B DNA MER1_type 0 225 1 3 819 870 181 32 43 chr5 30697896 30697926 -121839333 - B2_Mm2 SINE B2 -12 183 155 3 819 414 0 0 0 chr5 30697926 30697972 -121839287 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 3 819 870 181 32 43 chr5 30697972 30698126 -121839133 - B2_Mm2 SINE B2 -41 154 1 3 819 1953 147 97 23 chr5 30699383 30699725 -121837534 + ORR1B2 LTR MaLR 1 367 0 3 819 315 296 71 0 chr5 30699798 30699896 -121837363 + MER20 DNA MER1_type 2 106 -113 3 819 278 254 0 0 chr5 30700924 30700983 -121836276 + MIR3 SINE MIR 118 176 -32 3 819 314 239 209 7 chr5 30702039 30702178 -121835081 - RMER30 DNA MER1_type -1 201 35 4 819 280 260 30 0 chr5 30702665 30702799 -121834460 + (TA)n Simple_repeat Simple_repeat 1 138 0 4 819 306 0 0 0 chr5 30702827 30702861 -121834398 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 4 819 194 191 21 0 chr5 30702866 30702913 -121834346 + GA-rich Low_complexity Low_complexity 1 48 0 4 819 24 91 0 0 chr5 30703920 30703986 -121833273 + AT_rich Low_complexity Low_complexity 1 66 0 4 819 866 149 214 22 chr5 30703990 30704168 -121833091 - B3 SINE B2 0 216 5 4 819 192 40 0 0 chr5 30704211 30704236 -121833023 + (CCCA)n Simple_repeat Simple_repeat 3 27 0 4 819 236 302 16 58 chr5 30706169 30706315 -121830944 + MIR SINE MIR 121 266 -2 4 819 181 125 0 0 chr5 30707415 30707447 -121829812 + L3 LINE CR1 768 799 -3690 4 819 797 182 8 0 chr5 30708374 30708506 -121828753 - B1_Mur1 SINE Alu -14 135 3 4 819 465 34 0 0 chr5 30708722 30708781 -121828478 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 819 21 0 0 0 chr5 30709282 30709303 -121827956 + AT_rich Low_complexity Low_complexity 1 21 0 4 819 497 44 15 0 chr5 30711330 30711398 -121825861 + (TTTA)n Simple_repeat Simple_repeat 1 69 0 4 819 410 324 0 56 chr5 30711404 30711548 -121825711 - RSINE1 SINE B4 -21 144 9 4 819 628 169 8 53 chr5 30711566 30711697 -121825562 - ID_B1 SINE B4 0 224 100 4 819 247 195 33 33 chr5 30713497 30713503 -121823756 + (CAAA)n Simple_repeat Simple_repeat 3 8 0 4 819 766 244 13 0 chr5 30713503 30713659 -121823600 + RSINE1 SINE B4 3 160 -5 4 819 247 195 33 33 chr5 30713659 30713742 -121823517 + (CAAA)n Simple_repeat Simple_repeat 1 84 0 4 819 428 309 56 0 chr5 30714396 30714522 -121822737 - RSINE1 SINE B4 -29 136 4 4 819 442 252 0 35 chr5 30714522 30714637 -121822622 - ID_B1 SINE B4 0 224 114 4 819 737 191 26 21 chr5 30714806 30715003 -121822256 - B3 SINE B2 -1 194 1 4 819 277 260 39 13 chr5 30715012 30715090 -121822169 - ID4 SINE ID -2 81 2 4 819 200 342 14 0 chr5 30715393 30715466 -121821793 - L3b LINE CR1 -343 139 66 4 819 273 209 0 0 chr5 30719383 30719450 -121817809 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 819 560 139 16 0 chr5 30719625 30719754 -121817505 + (CAGA)n Simple_repeat Simple_repeat 2 132 0 4 819 241 274 36 89 chr5 30720348 30720460 -121816799 - MIRc SINE MIR -149 119 14 4 819 357 116 0 0 chr5 30721463 30721532 -121815727 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 819 952 184 133 0 chr5 30723066 30723262 -121813997 + URR1B DNA MER1_type 1 222 -3 4 819 202 200 0 0 chr5 30723749 30723784 -121813475 + (TGG)n Simple_repeat Simple_repeat 1 35 0 4 819 342 0 0 0 chr5 30723789 30723827 -121813432 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 819 815 292 28 24 chr5 30724687 30724761 -121812498 + B4A SINE B4 1 74 -218 4 819 615 117 0 0 chr5 30724761 30724855 -121812404 + (CCTG)n Simple_repeat Simple_repeat 1 94 0 4 819 825 65 0 0 chr5 30724856 30724964 -121812295 + (TCCC)n Simple_repeat Simple_repeat 2 109 0 4 819 815 292 28 24 chr5 30724964 30725178 -121812081 + B4A SINE B4 75 286 -6 4 819 245 29 29 0 chr5 30726798 30726832 -121810427 + (TGG)n Simple_repeat Simple_repeat 3 37 0 4 819 477 0 0 0 chr5 30728298 30728351 -121808908 + (TTA)n Simple_repeat Simple_repeat 2 54 0 4 819 469 292 0 35 chr5 30728691 30728865 -121808394 + (TGGA)n Simple_repeat Simple_repeat 3 170 0 4 819 199 368 0 0 chr5 30729312 30729380 -121807879 + MIRm SINE MIR 209 276 0 4 819 321 279 91 21 chr5 30729391 30729534 -121807725 - MIRb SINE MIR -69 199 47 4 819 471 243 140 9 chr5 30731584 30731800 -121805459 + RMER20B LTR ERVK 132 386 -130 4 819 554 236 68 6 chr5 30732019 30732181 -121805078 - ID_B1 SINE B4 -48 176 5 4 819 2106 141 108 5 chr5 30732715 30733087 -121804172 + MTC LTR MaLR 4 413 -8 4 819 447 149 48 24 chr5 30733591 30733756 -121803503 + (TCTCTG)n Simple_repeat Simple_repeat 2 170 0 4 819 228 318 62 26 chr5 30733756 30733869 -121803390 + MER5B DNA MER1_type 1 117 -61 4 819 545 244 21 38 chr5 30733880 30734077 -121803182 + MLT1A1 LTR MaLR 166 408 0 4 819 1115 77 0 0 chr5 30734116 30734259 -121803000 + B1_Mus2 SINE Alu 1 143 -4 4 819 893 35 9 0 chr5 30734260 30734373 -121802886 + (GAAA)n Simple_repeat Simple_repeat 2 115 0 4 819 219 336 26 53 chr5 30734899 30735012 -121802247 - MIR SINE MIR -151 125 16 4 819 182 407 0 0 chr5 30735269 30735350 -121801909 + MIR SINE MIR 36 116 -146 4 819 373 289 163 10 chr5 30735452 30735648 -121801611 + MLT1H LTR MaLR 57 282 -267 4 819 228 351 74 7 chr5 30737074 30737209 -121800050 + MIR3 SINE MIR 33 176 -32 4 819 186 262 0 0 chr5 30737306 30737348 -121799911 + MIRb SINE MIR 41 82 -186 4 819 213 133 0 62 chr5 30737529 30737593 -121799666 + G-rich Low_complexity Low_complexity 6 65 0 4 819 183 276 53 0 chr5 30738296 30738372 -121798887 + MIRb SINE MIR 60 139 -129 4 819 231 36 0 0 chr5 30739474 30739502 -121797757 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 819 361 352 145 31 chr5 30739566 30739883 -121797376 + HAL1 LINE L1 1447 1799 -708 4 819 999 231 9 9 chr5 30739883 30740097 -121797162 - B3 SINE B2 0 216 3 4 819 209 111 44 0 chr5 30740110 30740155 -121797104 + T-rich Low_complexity Low_complexity 1 47 0 4 819 1200 277 113 7 chr5 30740258 30740672 -121796587 + RCHARR1 DNA MER1_type 12 469 -505 4 819 351 206 19 29 chr5 30740674 30740779 -121796480 + RCHARR1 DNA MER1_type 753 856 -118 4 819 234 136 0 0 chr5 30740765 30740809 -121796450 - B3 SINE B2 -3 213 170 4 819 1012 186 19 5 chr5 30741394 30741605 -121795654 + B3 SINE B2 2 215 -1 4 819 396 0 0 0 chr5 30741735 30741779 -121795480 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 819 249 286 57 0 chr5 30741794 30741864 -121795395 - B1F1 SINE Alu -64 85 12 4 819 762 244 67 10 chr5 30742118 30742313 -121794946 - ID_B1 SINE B4 -9 215 10 4 819 408 295 19 0 chr5 30742756 30742861 -121794398 + MER81 DNA AcHobo 6 112 -2 4 819 272 322 105 14 chr5 30742890 30743167 -121794092 + L1ME5 LINE L1 5842 6143 -51 4 819 225 0 0 0 chr5 30743209 30743234 -121794025 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 819 252 59 0 0 chr5 30745837 30745871 -121791388 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 819 353 239 0 86 chr5 30748463 30748507 -121788752 + ID_B1 SINE B4 128 163 -61 4 819 1638 233 29 10 chr5 30748507 30748918 -121788341 - MTD LTR MaLR 0 419 1 4 819 353 239 0 86 chr5 30748918 30748978 -121788281 + ID_B1 SINE B4 164 223 -1 4 819 765 0 0 0 chr5 30748978 30749063 -121788196 + (GAA)n Simple_repeat Simple_repeat 1 85 0 4 819 1106 84 5 27 chr5 30749066 30749250 -121788009 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 819 247 314 30 30 chr5 30749945 30750077 -121787182 - B4 SINE B4 -31 134 1 4 819 206 363 48 10 chr5 30750085 30750188 -121787071 + MIRb SINE MIR 47 153 -115 4 819 439 299 61 43 chr5 30750419 30750650 -121786609 - L1ME3 LINE L1 0 6162 5928 4 819 867 234 11 11 chr5 30750656 30750846 -121786413 - B3 SINE B2 0 216 27 4 819 267 367 0 0 chr5 30750911 30751001 -121786258 + (TG)n Simple_repeat Simple_repeat 1 90 0 4 819 783 266 142 20 chr5 30751009 30751262 -121785997 - B4 SINE B4 -8 284 1 4 819 232 327 65 0 chr5 30751596 30751703 -121785556 - L1ME3 LINE L1 -412 5828 5715 4 819 666 235 147 23 chr5 30751712 30751930 -121785329 + MTD LTR MaLR 1 245 -174 4 819 274 185 11 147 chr5 30751947 30751983 -121785276 + MTD LTR MaLR 340 374 -47 4 819 1053 81 0 26 chr5 30751983 30752135 -121785124 - B1_Mus1 SINE Alu 0 148 1 4 819 274 185 11 147 chr5 30752135 30752193 -121785066 + MTD LTR MaLR 375 421 0 4 819 387 0 0 0 chr5 30752219 30752262 -121784997 + (CAA)n Simple_repeat Simple_repeat 1 43 0 4 819 616 320 133 23 chr5 30752262 30752911 -121784348 - L1ME3 LINE L1 -481 5683 4964 4 819 336 318 18 37 chr5 30753066 30753229 -121784030 - B4A SINE B4 -132 160 1 4 819 533 188 27 0 chr5 30753229 30753340 -121783919 - B1_Mur4 SINE Alu -35 115 2 4 819 955 314 142 19 chr5 30753505 30754506 -121782753 - L1ME3 LINE L1 -1319 4827 3704 4 819 480 259 3 0 chr5 30754515 30754867 -121782392 + (TG)n Simple_repeat Simple_repeat 1 353 0 4 819 724 240 55 73 chr5 30754873 30755147 -121782112 - B4A SINE B4 0 292 24 4 819 262 336 0 28 chr5 30755295 30755436 -121781823 - L1ME3 LINE L1 -3249 2897 2761 4 819 320 257 103 26 chr5 30755566 30755682 -121781577 - RSINE1 SINE B4 -2 163 39 4 819 1141 191 0 23 chr5 30756595 30756815 -121780444 + B3 SINE B2 1 215 -1 4 819 2167 140 60 10 chr5 30757066 30757449 -121779810 + MTC LTR MaLR 12 413 -8 4 819 269 261 15 0 chr5 30757453 30757518 -121779741 + RMER15-int LTR ERVL 270 335 -4664 4 819 1202 41 0 0 chr5 30758070 30758215 -121779044 - B1_Mus1 SINE Alu -3 145 1 4 819 525 323 79 15 chr5 30758463 30758730 -121778529 - B4A SINE B4 -8 284 1 4 819 267 263 15 0 chr5 30759055 30759134 -121778125 + L2a LINE L2 3294 3424 -2 4 819 666 202 12 6 chr5 30759769 30759938 -121777321 + GA-rich Low_complexity Low_complexity 1 170 0 4 819 180 77 0 0 chr5 30760295 30760321 -121776938 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 819 327 171 58 58 chr5 30760859 30760879 -121776380 + B1F SINE Alu 61 122 -27 4 819 409 82 33 0 chr5 30760879 30760940 -121776319 + ID_B1 SINE B4 154 216 -8 4 819 205 337 99 28 chr5 30761126 30761337 -121775922 - L2b LINE L2 -212 3163 2938 4 819 286 245 25 11 chr5 30762191 30762302 -121774957 + PB1D10 SINE Alu 1 115 -34 4 819 262 299 0 91 chr5 30762311 30762399 -121774860 + ID4_ SINE ID 11 90 -62 4 819 425 76 0 15 chr5 30764379 30764446 -121772813 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 819 733 289 17 40 chr5 30764827 30765123 -121772136 + B4A SINE B4 2 290 -2 4 819 614 13 0 13 chr5 30765134 30765210 -121772049 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 819 437 243 9 26 chr5 30765998 30766112 -121771147 + RSINE1 SINE B4 3 114 -51 5 819 809 92 8 0 chr5 30766159 30766279 -121770980 + (TAGA)n Simple_repeat Simple_repeat 1 121 0 5 819 342 0 0 0 chr5 30767136 30767174 -121770085 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 819 261 267 152 0 chr5 30767572 30767677 -121769582 - MTEa LTR MaLR 0 379 259 5 819 398 159 55 8 chr5 30767910 30768009 -121769250 - B1F SINE Alu -40 108 11 5 819 227 293 12 62 chr5 30767938 30768018 -121769241 - MT2B2 LTR ERVL -343 241 166 5 819 484 204 14 83 chr5 30769439 30769583 -121767676 - ID_B1 SINE B4 0 224 91 5 819 1155 191 4 18 chr5 30769789 30770018 -121767241 + URR1A DNA MER1_type 1 226 0 5 819 459 203 135 24 chr5 30770811 30770937 -121766322 + RSINE1 SINE B4 16 155 -10 5 819 21 0 0 0 chr5 30770948 30770969 -121766290 + AT_rich Low_complexity Low_complexity 1 21 0 5 819 194 313 59 24 chr5 30771117 30771202 -121766057 + MIR SINE MIR 21 108 -154 5 819 650 165 8 0 chr5 30771357 30771484 -121765775 + (ATG)n Simple_repeat Simple_repeat 3 130 0 5 819 226 236 41 14 chr5 30771710 30771770 -121765489 + MER44D DNA MER2_type 28 90 -615 5 819 1201 41 0 0 chr5 30771770 30771916 -121765343 + B1_Mus2 SINE Alu 2 147 0 5 819 226 236 41 14 chr5 30771916 30771928 -121765331 + MER44D DNA MER2_type 91 102 -603 5 819 248 156 0 0 chr5 30771954 30771999 -121765260 + MER44D DNA MER2_type 78 122 -583 5 819 283 234 64 0 chr5 30771988 30772082 -121765177 + MER44D DNA MER2_type 485 584 -121 5 819 329 305 23 15 chr5 30772207 30772337 -121764922 - MER63D DNA AcHobo -852 209 79 5 819 182 306 112 45 chr5 30772635 30772724 -121764535 - MER5B DNA MER1_type -64 114 20 5 819 344 259 12 24 chr5 30773476 30773559 -121763700 + ID4 SINE ID 2 83 0 5 819 351 0 0 0 chr5 30774238 30774277 -121762982 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 819 1691 157 111 31 chr5 30774648 30775036 -121762223 - MTD LTR MaLR 0 419 1 5 819 352 346 126 19 chr5 30776074 30776289 -121760970 - HAL1b LINE L1 -65 1944 1707 5 819 345 322 25 41 chr5 30776458 30776701 -121760558 - HAL1b LINE L1 -512 1497 1259 5 819 198 0 0 0 chr5 30776727 30776749 -121760510 + (GTGTG)n Simple_repeat Simple_repeat 2 23 0 5 819 1146 183 20 56 chr5 30776749 30776998 -121760261 - ORR1B2 LTR MaLR -3 364 125 5 819 721 136 254 53 chr5 30777195 30777404 -121759855 - ORR1B2 LTR MaLR -116 251 1 5 819 449 320 109 0 chr5 30777479 30777626 -121759633 - RSINE1 SINE B4 0 165 3 5 819 605 182 20 0 chr5 30779279 30779378 -121757881 + B1_Mur1 SINE Alu 41 141 -8 5 819 3875 184 16 20 chr5 30780047 30780781 -121756478 + ORR1C2-int LTR MaLR 757 1487 -22 5 819 1684 134 103 66 chr5 30780778 30781128 -121756131 + ORR1C2 LTR MaLR 22 384 0 5 819 729 280 68 27 chr5 30781137 30781357 -121755902 + B4A SINE B4 48 276 -16 5 819 354 204 0 0 chr5 30781382 30781475 -121755784 + CT-rich Low_complexity Low_complexity 2 94 0 5 819 1304 226 89 51 chr5 30782022 30782437 -121754822 - RMER5 LTR ERV1 -31 503 73 5 819 2016 207 32 12 chr5 30783236 30783637 -121753622 - MTD LTR MaLR -9 410 2 5 819 300 158 0 0 chr5 30785857 30785914 -121751345 + (CCA)n Simple_repeat Simple_repeat 3 59 0 5 819 195 277 0 0 chr5 30785959 30786006 -121751253 - MIRb SINE MIR -46 222 176 5 819 215 303 0 43 chr5 30786043 30786136 -121751123 - MIR3 SINE MIR -118 90 2 5 819 322 319 18 0 chr5 30786812 30786925 -121750334 - MIRb SINE MIR -144 124 10 5 819 306 0 0 0 chr5 30788232 30788266 -121748993 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 819 252 86 0 0 chr5 30788266 30788300 -121748959 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 819 659 274 122 8 chr5 30788340 30788587 -121748672 - B4 SINE B4 -17 275 1 5 819 1395 86 38 0 chr5 30790587 30790773 -121746486 + B2_Mm2 SINE B2 1 193 -2 5 819 332 227 182 86 chr5 30791149 30791347 -121745912 - MIRb SINE MIR -21 247 31 5 819 276 242 61 0 chr5 30791813 30791879 -121745380 + MLT1J LTR MaLR 89 158 -354 5 819 261 0 0 0 chr5 30792018 30792047 -121745212 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 819 236 209 0 23 chr5 30792049 30792113 -121745146 + MIRc SINE MIR 102 160 -102 5 819 292 344 31 31 chr5 30793309 30793438 -121743821 + MLT1J LTR MaLR 92 220 -292 5 819 250 271 89 128 chr5 30793490 30793693 -121743566 + MLT1J LTR MaLR 226 420 -92 5 819 274 231 223 36 chr5 30793762 30793901 -121743358 + MER5B DNA MER1_type 7 171 -7 5 819 514 14 0 41 chr5 30794667 30794740 -121742519 + (TTTCC)n Simple_repeat Simple_repeat 3 72 0 5 819 525 232 44 44 chr5 30794742 30794877 -121742382 - ID_B1 SINE B4 -10 214 80 5 819 371 286 179 0 chr5 30795289 30795401 -121741858 + ID_B1 SINE B4 82 213 -11 5 819 313 299 31 86 chr5 30795401 30795417 -121741842 + PB1 SINE Alu 1 121 -6 5 819 432 340 38 86 chr5 30795558 30795825 -121741434 + MLT1E3 LTR MaLR 253 506 -118 5 819 587 220 8 8 chr5 30795832 30795951 -121741308 + PB1D9 SINE Alu 2 120 0 5 819 387 127 32 41 chr5 30795955 30796078 -121741181 + GA-rich Low_complexity Low_complexity 2 123 0 5 819 975 146 0 0 chr5 30796518 30797050 -121740209 + (CA)n Simple_repeat Simple_repeat 1 532 0 5 819 257 250 112 0 chr5 30797260 30797412 -121739847 - L1MEf LINE L1 -5130 1503 1335 5 819 253 303 53 0 chr5 30797427 30797503 -121739756 - ID4_ SINE ID 0 83 4 5 819 327 194 36 125 chr5 30797519 30797631 -121739628 - PB1 SINE Alu -5 122 21 5 819 649 189 15 30 chr5 30797719 30797850 -121739409 + MLT2B2 LTR ERVL 1 129 -386 5 819 419 211 17 52 chr5 30797888 30798003 -121739256 + Lx8 LINE L1 7154 7264 -209 5 819 240 235 0 0 chr5 30798004 30798055 -121739204 + RMER15 LTR ERVL 403 453 -122 5 819 294 29 0 0 chr5 30798063 30798098 -121739161 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 819 423 0 0 0 chr5 30798098 30798145 -121739114 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 819 258 281 217 86 chr5 30798290 30798434 -121738825 + B3A SINE B2 1 151 -47 5 819 315 0 0 0 chr5 30798434 30798469 -121738790 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 819 258 281 217 86 chr5 30798469 30798499 -121738760 + B3A SINE B2 152 198 0 5 819 303 324 118 0 chr5 30798568 30798704 -121738555 + MLT2B2 LTR ERVL 333 484 -78 5 819 261 265 0 29 chr5 30798717 30798787 -121738472 + CT-rich Low_complexity Low_complexity 1 68 0 5 819 263 338 65 48 chr5 30798802 30799032 -121738227 - L1MEf LINE L1 -5415 1218 985 5 819 207 0 0 0 chr5 30799070 30799093 -121738166 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 5 819 244 277 0 30 chr5 30799094 30799161 -121738098 - ID4 SINE ID -17 66 2 5 819 328 333 11 11 chr5 30799170 30799261 -121737998 - PB1D10 SINE Alu -15 102 12 5 819 237 213 21 0 chr5 30799309 30799356 -121737903 - MLT2B1 LTR ERVL -246 274 227 5 819 216 242 112 61 chr5 30799497 30799654 -121737605 - MIR3 SINE MIR -47 229 56 5 819 555 301 29 104 chr5 30799801 30800187 -121737072 + ORR1E LTR MaLR 3 359 0 5 819 209 327 48 4 chr5 30800975 30801069 -121736190 + MIR SINE MIR 100 201 -67 5 819 249 276 17 0 chr5 30801165 30801223 -121736036 + ID4 SINE ID 3 61 -22 5 819 324 70 0 0 chr5 30801238 30801281 -121735978 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 820 228 261 92 0 chr5 30802384 30802449 -121734810 + ID4 SINE ID 3 73 -10 5 820 348 127 0 0 chr5 30802467 30802522 -121734737 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 820 1060 140 12 0 chr5 30802553 30802717 -121734542 + URR1B DNA MER1_type 59 224 -1 5 820 244 231 0 0 chr5 30802924 30802976 -121734283 - MER5A1 DNA MER1_type -2 164 113 5 820 760 204 13 20 chr5 30803121 30803271 -121733988 + B1F2 SINE Alu 1 149 0 5 820 1229 261 49 30 chr5 30803414 30803781 -121733478 + MLT1C LTR MaLR 3 376 -91 5 820 385 194 18 18 chr5 30803803 30803913 -121733346 + (CATA)n Simple_repeat Simple_repeat 3 112 0 5 820 631 286 30 30 chr5 30804217 30804419 -121732840 + Charlie7 DNA MER1_type 321 522 -2090 5 820 339 25 0 0 chr5 30804686 30804726 -121732533 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 820 495 242 115 30 chr5 30805000 30805200 -121732059 + RMER15 LTR ERVL 339 555 -20 5 820 338 318 142 13 chr5 30805300 30805503 -121731756 + Charlie7 DNA MER1_type 987 1216 -1396 5 820 3435 28 2 8 chr5 30805503 30805901 -121731358 + MTA_Mm LTR MaLR 1 396 0 5 820 338 318 142 13 chr5 30805901 30805936 -121731323 + Charlie7 DNA MER1_type 1217 1255 -1357 5 820 545 209 9 9 chr5 30805949 30806055 -121731204 + PB1D10 SINE Alu 12 117 0 5 820 788 191 79 47 chr5 30806057 30806271 -121730988 - RMER1C Other Other -182 1160 940 5 820 565 159 44 142 chr5 30806270 30806453 -121730806 + RMER1C Other Other 1167 1331 -11 5 820 1037 221 146 27 chr5 30806556 30806817 -121730442 + B4A SINE B4 1 292 0 5 820 302 0 0 26 chr5 30806841 30806880 -121730379 + (CACAC)n Simple_repeat Simple_repeat 1 38 0 5 820 1169 311 116 50 chr5 30807091 30807922 -121729337 + Charlie7 DNA MER1_type 1495 2379 -233 5 820 620 262 48 102 chr5 30807958 30808082 -121729177 + RSINE1 SINE B4 9 140 -25 5 820 312 70 0 0 chr5 30808082 30808125 -121729134 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 820 620 262 48 102 chr5 30808125 30808166 -121729093 + RSINE1 SINE B4 141 165 0 5 820 539 283 89 25 chr5 30808221 30808424 -121728835 - B3 SINE B2 0 216 1 5 820 346 42 146 0 chr5 30808504 30808552 -121728707 - ORR1A1 LTR MaLR 0 326 272 5 820 1340 75 0 6 chr5 30808550 30808564 -121728695 - B2_Mm1t SINE B2 -19 174 161 5 820 243 0 0 0 chr5 30808564 30808591 -121728668 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 820 1340 75 0 6 chr5 30808591 30808751 -121728508 - B2_Mm1t SINE B2 -33 160 1 5 820 2352 53 20 0 chr5 30808751 30809049 -121728210 - ORR1A1 LTR MaLR -42 304 1 5 820 13974 58 12 3 chr5 30809049 30810824 -121726435 - ORR1A1-int LTR MaLR 0 1792 1 5 820 877 45 9 0 chr5 30810824 30810935 -121726324 - MT2C_Mm LTR ERVL 0 475 364 5 820 1408 30 0 0 chr5 30810935 30811100 -121726159 - MT2C_Mm LTR ERVL -310 165 1 5 820 234 216 239 0 chr5 30811597 30811685 -121725574 + MT2C_Mm LTR ERVL 193 301 -174 5 820 274 22 43 43 chr5 30812479 30812526 -121724733 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 5 820 180 111 0 0 chr5 30813003 30813030 -121724229 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 820 699 241 25 2 chr5 30813038 30813202 -121724057 - B3A SINE B2 -15 201 39 5 820 246 253 149 169 chr5 30813194 30813275 -121723984 - B4A SINE B4 -81 211 143 5 820 2596 42 6 228 chr5 30813275 30813771 -121723488 + RLTR10 LTR ERVK 1 386 -4 6 820 246 253 149 169 chr5 30813771 30813884 -121723375 - B4A SINE B4 -150 142 21 5 820 217 245 19 0 chr5 30813897 30813950 -121723309 - B4 SINE B4 -230 62 9 6 820 22 0 0 0 chr5 30813966 30813988 -121723271 + AT_rich Low_complexity Low_complexity 1 22 0 6 820 308 291 59 68 chr5 30814093 30814211 -121723048 + RSINE1 SINE B4 47 163 -2 6 820 408 248 101 0 chr5 30814357 30814486 -121722773 - B1F SINE Alu -5 144 3 6 820 549 315 172 47 chr5 30814757 30815216 -121722043 + L1M5 LINE L1 4511 5039 -1107 6 820 1246 54 0 0 chr5 30815216 30815363 -121721896 - B1_Mus2 SINE Alu 0 147 1 6 820 549 315 172 47 chr5 30815363 30815526 -121721733 + L1M5 LINE L1 5040 5210 -936 6 820 327 327 41 12 chr5 30815525 30815695 -121721564 + L1MD1 LINE L1 5735 5909 -333 6 820 475 198 38 38 chr5 30815699 30815804 -121721455 + PB1D10 SINE Alu 13 117 0 6 820 22 0 0 0 chr5 30815804 30815826 -121721433 + AT_rich Low_complexity Low_complexity 1 22 0 6 820 303 269 114 43 chr5 30815890 30816030 -121721229 + L1MD1 LINE L1 5899 6048 -1947 6 820 330 87 0 0 chr5 30816086 30816132 -121721127 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 820 344 179 198 59 chr5 30816181 30816282 -121720977 - B3A SINE B2 -82 116 2 6 820 947 223 81 67 chr5 30816767 30816953 -121720306 - B4 SINE B4 -4 288 96 6 820 394 214 30 30 chr5 30816953 30817054 -121720205 - U6 snRNA snRNA -3 104 4 6 820 947 223 81 67 chr5 30817054 30817151 -121720108 - B4 SINE B4 -197 95 2 6 820 245 304 0 0 chr5 30817152 30817221 -121720038 + L1MD1 LINE L1 7846 7914 -81 6 820 1080 84 42 0 chr5 30817311 30817453 -121719806 + B1_Mus1 SINE Alu 1 148 0 6 820 402 279 16 32 chr5 30817622 30817748 -121719511 + PB1 SINE Alu 1 124 -3 6 820 318 309 183 41 chr5 30817748 30818165 -121719094 + L1MEc LINE L1 1384 1859 -4541 6 820 582 272 76 51 chr5 30818147 30818503 -121718756 + L1MEc LINE L1 2655 3019 -3300 6 820 249 231 64 46 chr5 30818496 30818605 -121718654 + L1M5 LINE L1 2900 3010 -3136 6 820 519 295 96 0 chr5 30819574 30819730 -121717529 - Tigger7 DNA MER2_type -2193 298 128 6 820 721 207 103 34 chr5 30819760 30819935 -121717324 + B3A SINE B2 12 198 0 6 820 340 295 126 13 chr5 30820981 30821132 -121716127 + MIRb SINE MIR 83 250 -18 6 820 329 333 96 7 chr5 30822912 30823048 -121714211 + PB1D7 SINE Alu 2 149 0 6 820 240 368 28 78 chr5 30823095 30823122 -121714137 - B4A SINE B4 -40 252 218 6 820 357 271 76 83 chr5 30823122 30823134 -121714125 - B1F1 SINE Alu 0 149 140 6 820 399 21 0 0 chr5 30823134 30823182 -121714077 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 820 357 271 76 83 chr5 30823182 30823314 -121713945 - B1F1 SINE Alu -10 139 6 6 820 1546 217 140 8 chr5 30823491 30823849 -121713410 - MTD LTR MaLR -14 405 1 6 820 347 337 78 88 chr5 30824767 30825050 -121712209 + L1ME4a LINE L1 5654 5933 -191 6 820 819 167 0 22 chr5 30827212 30827396 -121709863 + (CATA)n Simple_repeat Simple_repeat 1 180 0 6 820 308 119 0 0 chr5 30827425 30827467 -121709792 + HAL1-3A_ME LINE L1 1976 2017 -841 6 820 192 293 57 57 chr5 30828239 30828344 -121708915 - MIRm SINE MIR -126 150 46 6 820 234 0 0 0 chr5 30829589 30829615 -121707644 + (T)n Simple_repeat Simple_repeat 1 26 0 6 820 270 56 0 0 chr5 30830674 30830710 -121706549 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 820 303 303 193 17 chr5 30831347 30831528 -121705731 + HAL1 LINE L1 406 618 -1889 6 820 452 278 49 60 chr5 30831550 30831734 -121705525 + HAL1 LINE L1 711 892 -1615 6 820 844 230 107 5 chr5 30831937 30832142 -121705117 + B4 SINE B4 2 227 -65 6 820 463 290 8 24 chr5 30832143 30832270 -121704989 + B4A SINE B4 2 126 -166 6 820 888 305 109 24 chr5 30832347 30832895 -121704364 + HAL1 LINE L1 1468 2062 -445 6 820 683 179 6 0 chr5 30834145 30834324 -121702935 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 820 419 204 32 81 chr5 30834351 30834474 -121702785 - PB1D10 SINE Alu 0 117 1 6 820 232 247 52 41 chr5 30834485 30834582 -121702677 + Charlie18a DNA MER1_type 192 289 -53 6 820 191 373 30 53 chr5 30834654 30834787 -121702472 - L3 LINE CR1 -16 4473 4344 6 820 216 0 0 0 chr5 30834990 30835014 -121702245 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 820 195 156 0 0 chr5 30835432 30835464 -121701795 - MIR SINE MIR -60 148 117 6 820 292 321 0 150 chr5 30835565 30835752 -121701507 + RMER30 DNA MER1_type 39 197 -5 6 820 354 184 0 0 chr5 30835791 30835867 -121701392 + (TGGA)n Simple_repeat Simple_repeat 3 78 0 6 820 247 267 0 32 chr5 30837397 30837459 -121699800 + MIR SINE MIR 82 141 -67 6 820 382 290 58 0 chr5 30837987 30838125 -121699134 - RSINE1 SINE B4 -17 148 3 6 820 271 325 39 31 chr5 30838557 30838687 -121698572 + LTR33 LTR ERVL 54 184 -331 6 820 264 170 0 0 chr5 30839349 30839402 -121697857 + CT-rich Low_complexity Low_complexity 3 55 0 6 820 522 226 35 0 chr5 30839406 30839521 -121697738 - B1_Mur2 SINE Alu 0 149 31 6 820 305 317 78 10 chr5 30839767 30839869 -121697390 - MIRb SINE MIR -80 188 80 6 820 183 336 55 27 chr5 30840238 30840348 -121696911 + MIR SINE MIR 41 153 -55 6 820 334 250 26 0 chr5 30840740 30840816 -121696443 + MIRc SINE MIR 76 153 -115 6 820 230 210 48 0 chr5 30840964 30841026 -121696233 - MIR SINE MIR -111 97 33 6 820 806 113 20 13 chr5 30841222 30841374 -121695885 + (GGGA)n Simple_repeat Simple_repeat 2 154 0 6 820 296 313 129 14 chr5 30842116 30842472 -121694787 - HAL1 LINE L1 -135 2372 1976 6 820 292 284 153 26 chr5 30842659 30842887 -121694372 - HAL1 LINE L1 -856 1651 1395 6 820 3160 34 45 0 chr5 30844303 30844682 -121692577 - MTA_Mm LTR MaLR 0 396 1 6 820 627 280 67 108 chr5 30844972 30845344 -121691915 - ORR1E LTR MaLR 0 359 3 6 820 244 337 9 91 chr5 30846106 30846216 -121691043 + ID4_ SINE ID 12 112 -40 6 820 306 0 0 0 chr5 30846343 30846377 -121690882 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 820 4843 31 0 2 chr5 30847437 30848016 -121689243 - MERVL-int LTR ERVL -381 5104 4527 6 820 508 276 111 19 chr5 30848359 30848566 -121688693 + MIR SINE MIR 29 254 -8 6 820 232 289 138 15 chr5 30848670 30848800 -121688459 - LTR33 LTR ERVL -3 512 367 6 820 370 298 257 7 chr5 30849374 30849526 -121687733 + RMER30 DNA MER1_type 12 201 -1 6 820 188 349 45 18 chr5 30849608 30849719 -121687540 + MIRb SINE MIR 95 208 -60 6 820 450 0 0 0 chr5 30849766 30849816 -121687443 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 820 253 276 56 84 chr5 30850073 30850180 -121687079 + MER113 DNA MER1_type 104 207 -314 6 820 606 301 29 21 chr5 30850503 30850744 -121686515 + MER113 DNA MER1_type 254 496 -25 6 820 699 105 0 0 chr5 30850758 30850882 -121686377 + (TC)n Simple_repeat Simple_repeat 2 125 0 6 820 252 0 0 0 chr5 30850882 30850910 -121686349 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 820 283 250 28 0 chr5 30851055 30851127 -121686132 - MIRc SINE MIR 0 268 195 6 820 194 139 0 44 chr5 30851150 30851195 -121686064 + A-rich Low_complexity Low_complexity 2 44 0 6 820 301 253 24 0 chr5 30851466 30851549 -121685710 + L1MB7 LINE L1 5242 5326 -820 6 820 764 187 102 108 chr5 30851570 30851729 -121685530 + B3A SINE B2 2 157 -38 6 820 288 0 0 0 chr5 30851729 30851761 -121685498 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 820 572 187 102 108 chr5 30851761 30851787 -121685472 + B2_Mm2 SINE B2 158 185 -10 6 820 663 194 38 66 chr5 30851790 30851818 -121685441 + L1MB7 LINE L1 5313 5336 -964 6 820 2585 68 12 0 chr5 30851818 30852141 -121685118 + ORR1A2 LTR MaLR 1 327 0 6 820 663 173 26 60 chr5 30852141 30852302 -121684957 + L1MB7 LINE L1 5335 5499 -801 6 820 926 251 177 21 chr5 30852301 30852724 -121684535 + L1MB7 LINE L1 5696 6184 0 6 820 235 361 146 94 chr5 30853787 30853950 -121683309 + LTR16E1 LTR ERVL 1 179 -359 6 820 738 200 171 0 chr5 30853950 30854120 -121683139 + B3 SINE B2 1 199 -17 6 820 235 361 146 94 chr5 30854120 30854231 -121683028 + LTR16E1 LTR ERVL 180 289 -249 6 820 603 277 180 18 chr5 30854887 30855094 -121682165 - B4 SINE B4 -6 286 42 6 820 3559 20 2 0 chr5 30855094 30855489 -121681770 + MTA_Mm LTR MaLR 1 396 0 6 820 603 277 180 18 chr5 30855489 30855509 -121681750 - B4 SINE B4 -251 41 22 6 820 2673 68 6 0 chr5 30855510 30855835 -121681424 - ORR1A2 LTR MaLR 0 327 1 6 820 241 262 154 32 chr5 30856204 30856425 -121680834 - L2b LINE L2 -216 3159 2912 6 820 226 320 210 28 chr5 30856440 30856935 -121680324 - L2b LINE L2 -556 2863 2279 6 820 570 295 260 9 chr5 30857348 30857778 -121679481 + L1MEg LINE L1 266 803 -5281 6 820 404 206 0 0 chr5 30857829 30857902 -121679357 + ID4 SINE ID 2 74 -9 6 820 210 264 49 160 chr5 30858329 30858473 -121678786 - B3 SINE B2 0 216 89 6 820 198 0 0 0 chr5 30858473 30858495 -121678764 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 6 820 201 195 0 0 chr5 30860445 30860486 -121676773 + GA-rich Low_complexity Low_complexity 2 42 0 6 820 1053 113 6 11 chr5 30860491 30860670 -121676589 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 6 820 721 48 19 19 chr5 30860673 30860779 -121676480 + (GGAGAA)n Simple_repeat Simple_repeat 1 106 0 6 820 274 159 14 14 chr5 30860799 30860869 -121676390 + GA-rich Low_complexity Low_complexity 4 73 0 6 820 212 158 18 0 chr5 30861223 30861280 -121675979 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 820 225 341 107 12 chr5 30861775 30861944 -121675315 - MLT1K LTR MaLR -5 590 406 6 820 344 347 171 16 chr5 30863945 30864138 -121673121 - L1M4 LINE L1 -3597 2549 2327 6 820 357 248 2 130 chr5 30864146 30864303 -121672956 + L1MEf LINE L1 2310 2452 -3948 6 820 668 199 41 34 chr5 30864579 30864725 -121672534 + B1_Mur3 SINE Alu 1 147 -2 6 820 2658 283 43 24 chr5 30864766 30865710 -121671549 - L1MC2 LINE L1 -50 6294 5333 6 820 440 237 0 208 chr5 30865787 30865984 -121671275 - L1MC2 LINE L1 -940 5206 5051 6 820 297 276 52 13 chr5 30866014 30866091 -121671168 + LTR16B1 LTR ERVL 150 229 -251 6 820 491 31 15 0 chr5 30866234 30866299 -121670960 + (TC)n Simple_repeat Simple_repeat 2 67 0 6 820 393 291 91 64 chr5 30866545 30866893 -121670366 - MLT1A1 LTR MaLR -2 406 1 6 820 339 324 139 61 chr5 30867050 30867165 -121670094 + B1F1 SINE Alu 2 125 -2 6 820 322 287 87 35 chr5 30867194 30867483 -121669776 - L1M5 LINE L1 -1310 4836 4533 6 820 209 349 155 21 chr5 30867604 30867797 -121669462 - L2c LINE L2 -177 3210 2992 6 820 209 229 21 0 chr5 30868160 30868208 -121669051 + CT-rich Low_complexity Low_complexity 1 49 0 7 820 839 249 167 15 chr5 30868636 30868945 -121668314 - MTE2b LTR MaLR -13 366 59 7 820 487 176 24 0 chr5 30869007 30869092 -121668167 - MTE2b LTR MaLR -289 90 4 7 820 293 295 45 30 chr5 30869161 30869294 -121667965 - L2a LINE L2 -9 3417 3283 7 820 214 254 32 0 chr5 30869576 30869639 -121667620 + A-rich Low_complexity Low_complexity 3 67 0 7 820 272 337 54 58 chr5 30869963 30870152 -121667107 + MIR3 SINE MIR 4 184 -24 7 820 194 0 39 0 chr5 30870898 30870924 -121666335 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 820 1548 120 4 26 chr5 30871347 30871578 -121665681 - URR1A DNA MER1_type 0 226 1 7 820 667 214 0 0 chr5 30871587 30871704 -121665555 - ID_B1 SINE B4 -6 218 102 7 820 1065 271 107 14 chr5 30871876 30872221 -121665038 - MTEa LTR MaLR -2 377 1 7 820 1167 41 41 0 chr5 30872277 30872717 -121664542 + (TCTA)n Simple_repeat Simple_repeat 1 458 0 7 820 369 0 0 0 chr5 30873600 30873641 -121663618 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 820 398 298 78 17 chr5 30873661 30873777 -121663482 - B4A SINE B4 -2 290 168 7 820 545 314 57 33 chr5 30875732 30875943 -121661316 + MER20 DNA MER1_type 3 218 -1 7 820 785 269 148 16 chr5 30876005 30876262 -121660997 - B4 SINE B4 0 292 2 7 820 1673 167 106 12 chr5 30876308 30876648 -121660611 - ORR1D1 LTR MaLR 0 374 3 7 820 247 337 59 0 chr5 30876712 30876813 -121660446 + MLT1N2 LTR MaLR 113 219 -343 7 820 581 340 14 14 chr5 30876862 30877071 -121660188 + MLT1N2 LTR MaLR 337 545 -17 7 820 186 268 35 18 chr5 30877703 30877760 -121659499 - L2c LINE L2 0 3387 3330 7 820 249 108 0 0 chr5 30878063 30878100 -121659159 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 820 223 282 28 0 chr5 30880570 30880641 -121656618 + MIRb SINE MIR 2 74 -194 7 820 786 252 68 19 chr5 30881997 30882203 -121655056 + B3 SINE B2 1 216 0 7 820 261 0 0 0 chr5 30882292 30882321 -121654938 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 820 722 170 23 0 chr5 30882325 30882589 -121654670 + (TG)n Simple_repeat Simple_repeat 1 270 0 7 820 1116 259 27 57 chr5 30882589 30882888 -121654371 - B4 SINE B4 0 292 3 7 820 292 283 229 42 chr5 30883698 30884034 -121653225 - L3 LINE CR1 -69 4420 4022 7 820 576 29 0 0 chr5 30884246 30884316 -121652943 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 820 588 255 0 0 chr5 30884884 30885214 -121652045 + (CA)n Simple_repeat Simple_repeat 1 330 0 7 820 183 262 72 36 chr5 30886423 30886506 -121650753 - MIRc SINE MIR -182 86 1 7 820 484 16 0 0 chr5 30886653 30886716 -121650543 + L1_Mus1 LINE L1 6505 6567 0 7 820 310 293 13 0 chr5 30888044 30888119 -121649140 + MIR3 SINE MIR 110 185 -23 7 820 24 0 0 0 chr5 30888135 30888159 -121649100 + AT_rich Low_complexity Low_complexity 1 24 0 7 820 192 350 19 19 chr5 30888578 30888683 -121648576 - MIRc SINE MIR -50 218 114 7 820 241 330 34 51 chr5 30888737 30888855 -121648404 + MIRb SINE MIR 76 191 -77 7 820 195 327 28 37 chr5 30889163 30889271 -121647988 - MIR3 SINE MIR -21 187 81 7 820 234 351 100 13 chr5 30889721 30889871 -121647388 + MIR3 SINE MIR 37 199 -9 7 820 414 0 0 0 chr5 30890075 30890121 -121647138 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 820 443 187 0 9 chr5 30890202 30890315 -121646944 + CT-rich Low_complexity Low_complexity 1 112 0 7 820 243 208 13 25 chr5 30890401 30890480 -121646779 + (CGGG)n Simple_repeat Simple_repeat 2 79 0 7 820 293 68 0 22 chr5 30890498 30890543 -121646716 + (CGG)n Simple_repeat Simple_repeat 3 46 0 7 820 202 243 0 39 chr5 30890609 30890686 -121646573 + G-rich Low_complexity Low_complexity 3 76 0 7 820 21 36 0 0 chr5 30890983 30891011 -121646248 + GC_rich Low_complexity Low_complexity 1 28 0 7 820 198 156 0 0 chr5 30891464 30891509 -121645750 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 820 204 97 0 0 chr5 30891723 30891754 -121645505 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 820 288 0 0 0 chr5 30891754 30891785 -121645474 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 820 326 302 56 35 chr5 30891899 30892043 -121645216 + MIR3 SINE MIR 61 207 -1 7 820 375 177 24 21 chr5 30894183 30894286 -121642973 - ID2 SINE ID -37 115 15 7 820 507 33 0 0 chr5 30894534 30894595 -121642664 + (TC)n Simple_repeat Simple_repeat 1 61 0 7 820 205 171 24 0 chr5 30895043 30895084 -121642175 - MIRc SINE MIR -147 121 80 7 820 180 260 20 0 chr5 30895758 30895808 -121641451 + MIR SINE MIR 98 148 -114 7 820 185 254 44 15 chr5 30896291 30896359 -121640900 - MIRc SINE MIR -146 122 53 7 820 277 209 75 0 chr5 30896538 30896605 -121640654 - MIR SINE MIR -101 107 36 7 820 207 100 0 0 chr5 30896914 30896944 -121640315 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 7 820 412 143 378 0 chr5 30896944 30897042 -121640217 - B1_Mur2 SINE Alu -6 143 9 7 820 351 289 74 40 chr5 30897305 30897453 -121639806 - MER5A1 DNA MER1_type 0 166 14 7 820 328 182 91 0 chr5 30897824 30897890 -121639369 + ID4 SINE ID 3 74 -9 7 820 180 0 0 0 chr5 30897895 30897915 -121639344 + (TAA)n Simple_repeat Simple_repeat 2 21 0 7 820 514 113 21 0 chr5 30898412 30898509 -121638750 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 820 338 349 31 44 chr5 30898583 30898742 -121638517 - MLT1A0 LTR MaLR 0 365 209 7 820 219 258 43 43 chr5 30898773 30898842 -121638417 - ID4 SINE ID -13 70 2 7 820 322 282 100 25 chr5 30898844 30898964 -121638295 - B1F SINE Alu -3 146 18 7 820 383 270 108 0 chr5 30898965 30899076 -121638183 - MLT1A0 LTR MaLR -217 148 26 7 820 1384 189 141 18 chr5 30899359 30899699 -121637560 - MTD LTR MaLR -27 392 11 7 820 258 333 0 0 chr5 30899866 30899938 -121637321 + L3 LINE CR1 4302 4373 -116 7 820 251 326 35 113 chr5 30900006 30900262 -121636997 - MLT2C1 LTR ERVL 0 397 162 7 820 289 308 37 37 chr5 30900302 30900410 -121636849 - MLT1E3 LTR MaLR -452 172 65 7 820 397 240 60 0 chr5 30900319 30900419 -121636840 - MLT2C1 LTR ERVL -257 140 35 7 820 1388 134 0 26 chr5 30900912 30901142 -121636117 - URR1B DNA MER1_type 0 225 2 7 820 282 365 14 49 chr5 30901964 30902108 -121635151 - MIR SINE MIR -55 207 69 7 820 492 227 7 50 chr5 30902478 30902617 -121634642 - B1F2 SINE Alu 0 149 17 7 820 665 236 0 6 chr5 30903310 30903485 -121633774 + GA-rich Low_complexity Low_complexity 4 177 0 7 820 482 329 73 7 chr5 30904764 30904914 -121632345 + RSINE1 SINE B4 6 165 0 7 820 23 33 0 0 chr5 30904966 30904996 -121632263 + AT_rich Low_complexity Low_complexity 1 30 0 7 820 238 226 16 31 chr5 30905604 30905668 -121631591 + ID_B1 SINE B4 96 158 -66 7 820 270 0 0 0 chr5 30905814 30905844 -121631415 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 820 213 81 54 0 chr5 30907003 30907040 -121630219 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 7 820 260 225 24 59 chr5 30907434 30907519 -121629740 + MIRc SINE MIR 87 168 -100 7 820 834 223 20 5 chr5 30907705 30907903 -121629356 + MIR SINE MIR 62 262 0 7 820 246 62 0 0 chr5 30908719 30908751 -121628508 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 820 184 350 74 44 chr5 30910794 30910960 -121626299 + MIRc SINE MIR 23 202 -66 7 820 1182 196 83 172 chr5 30911005 30911412 -121625847 - MTE2a LTR MaLR -4 375 5 7 820 196 216 0 56 chr5 30912309 30912363 -121624896 + MIRb SINE MIR 210 260 -8 7 820 423 0 0 0 chr5 30912987 30913034 -121624225 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 820 278 261 214 8 chr5 30913051 30913146 -121624113 + MIR SINE MIR 99 216 -46 7 820 324 0 0 0 chr5 30913146 30913182 -121624077 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 820 278 261 214 8 chr5 30913182 30913217 -121624042 + MIR SINE MIR 217 255 -7 7 820 203 271 0 28 chr5 30913546 30913618 -121623641 + C-rich Low_complexity Low_complexity 5 74 0 7 820 184 298 0 0 chr5 30914172 30914219 -121623040 - L2a LINE L2 -77 3349 3303 7 820 200 239 0 21 chr5 30914254 30914301 -121622958 + CT-rich Low_complexity Low_complexity 3 48 0 7 820 2840 31 2 208 chr5 30914551 30915042 -121622217 - RLTR10 LTR ERVK 0 390 1 7 820 487 277 8 0 chr5 30915147 30915266 -121621993 + PB1 SINE Alu 8 127 0 7 820 207 69 0 0 chr5 30915398 30915427 -121621832 + (TTA)n Simple_repeat Simple_repeat 3 31 0 7 820 954 316 59 14 chr5 30915460 30915899 -121621360 - L1ME4a LINE L1 -72 6052 5594 7 820 271 310 40 10 chr5 30916490 30916591 -121620668 + MIR3 SINE MIR 54 157 -51 7 820 320 268 88 3 chr5 30918592 30918736 -121618523 - MIRb SINE MIR -101 175 17 7 820 198 0 0 0 chr5 30919163 30919185 -121618074 + (CAGG)n Simple_repeat Simple_repeat 4 25 0 7 820 459 183 0 0 chr5 30919548 30919679 -121617580 + (TG)n Simple_repeat Simple_repeat 1 131 0 7 820 416 243 204 42 chr5 30919679 30919821 -121617438 - RSINE1 SINE B4 0 165 1 7 820 188 312 117 0 chr5 30920004 30920081 -121617178 + MIR3 SINE MIR 92 177 -31 7 820 305 100 20 0 chr5 30921322 30921372 -121615887 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 820 206 295 19 0 chr5 30921515 30921598 -121615661 - MIR SINE MIR -108 168 78 7 820 443 282 23 9 chr5 30922087 30922240 -121615019 - MIRb SINE MIR -2 260 107 7 820 222 381 31 0 chr5 30922686 30922783 -121614476 - MIRc SINE MIR -148 120 21 7 820 363 245 67 19 chr5 30922869 30922973 -121614286 - PB1D10 SINE Alu -8 109 1 7 820 360 288 0 0 chr5 30923097 30923333 -121613926 + (CA)n Simple_repeat Simple_repeat 1 236 0 7 820 488 278 13 34 chr5 30923981 30924130 -121613129 + B1F1 SINE Alu 2 147 -2 7 820 531 82 0 0 chr5 30925620 30925693 -121611566 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 820 302 200 0 0 chr5 30925913 30925963 -121611296 + L1MEg LINE L1 1878 1927 -4157 8 820 221 75 25 0 chr5 30926175 30926215 -121611044 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 8 820 206 282 42 0 chr5 30926242 30926313 -121610946 - MIRc SINE MIR -67 201 128 8 820 26 0 0 0 chr5 30926318 30926344 -121610915 + AT_rich Low_complexity Low_complexity 1 26 0 8 820 369 299 100 18 chr5 30927844 30928014 -121609245 - MIR3 SINE MIR -13 195 12 8 820 456 220 100 9 chr5 30929267 30929377 -121607882 + PB1D7 SINE Alu 1 120 0 8 820 1183 172 69 0 chr5 30929656 30929860 -121607399 + ID_B1 SINE B4 1 218 -6 8 820 519 122 0 0 chr5 30930454 30930544 -121606715 + (CA)n Simple_repeat Simple_repeat 1 90 0 8 820 230 229 0 0 chr5 30930557 30930605 -121606654 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 820 257 292 99 35 chr5 30932322 30932464 -121604795 + MLT1L LTR MaLR 239 389 -221 8 821 326 315 0 0 chr5 30933702 30933794 -121603465 - L3 LINE CR1 -860 3629 3538 8 821 714 253 26 46 chr5 30934030 30934225 -121603034 + ID_B1 SINE B4 22 212 -12 8 821 1137 88 0 0 chr5 30934225 30934384 -121602875 + (GAAA)n Simple_repeat Simple_repeat 4 162 0 8 821 492 105 0 0 chr5 30934388 30934464 -121602795 + (GGGA)n Simple_repeat Simple_repeat 2 77 0 8 821 266 329 0 0 chr5 30934750 30934832 -121602427 - MIRb SINE MIR -151 117 36 8 821 474 225 0 149 chr5 30934961 30935102 -121602157 + RSINE1 SINE B4 46 165 0 8 821 231 261 28 28 chr5 30935606 30935677 -121601582 + MER66C LTR ERV1 428 498 -57 8 821 938 129 0 8 chr5 30935684 30935817 -121601442 + B1_Mus1 SINE Alu 3 134 -14 8 821 468 123 0 0 chr5 30935820 30935893 -121601366 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 8 821 261 0 0 0 chr5 30935895 30935924 -121601335 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 8 821 461 287 37 43 chr5 30935924 30936088 -121601171 + RSINE1 SINE B4 3 165 0 8 821 252 326 94 0 chr5 30937031 30937169 -121600090 + L1ME1 LINE L1 5749 5899 -265 8 821 402 273 0 0 chr5 30937272 30937360 -121599899 + RSINE1 SINE B4 2 89 -76 8 821 236 312 0 11 chr5 30937423 30937517 -121599742 + L1ME1 LINE L1 5893 5985 -194 8 821 234 267 150 0 chr5 30937794 30937854 -121599405 + ID2 SINE ID 2 70 -13 8 821 549 182 21 0 chr5 30937857 30938000 -121599259 + (TAGA)n Simple_repeat Simple_repeat 1 146 0 8 821 407 183 14 0 chr5 30938015 30938086 -121599173 + B4 SINE B4 1 72 -220 8 821 369 0 0 0 chr5 30938103 30938144 -121599115 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 821 297 0 0 0 chr5 30938575 30938608 -121598651 + (GA)n Simple_repeat Simple_repeat 2 34 0 8 821 282 295 83 30 chr5 30940104 30940237 -121597022 - MIRb SINE MIR -14 254 115 8 821 182 262 0 0 chr5 30940685 30940727 -121596532 - MIR SINE MIR -88 120 79 8 821 666 234 39 0 chr5 30941513 30941667 -121595592 + RSINE1 SINE B4 4 163 -2 8 821 288 211 0 0 chr5 30941903 30941960 -121595299 + RSINE1 SINE B4 105 161 -4 8 821 339 318 192 5 chr5 30941976 30942200 -121595059 + Lx8 LINE L1 6991 7256 -217 8 821 646 278 6 66 chr5 30943527 30943708 -121593551 + B3A SINE B2 29 198 0 8 821 833 201 0 0 chr5 30943785 30943924 -121593335 + B1_Mur2 SINE Alu 3 141 -8 8 821 278 367 0 0 chr5 30944157 30944337 -121592922 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 8 821 199 186 70 0 chr5 30944472 30944515 -121592744 + MIR3 SINE MIR 117 162 -46 8 821 414 255 32 0 chr5 30944733 30944827 -121592432 + B4 SINE B4 107 203 -89 8 821 258 255 35 148 chr5 30944736 30944851 -121592408 + B1F2 SINE Alu 25 126 -23 8 821 254 196 22 0 chr5 30944824 30944870 -121592389 + B4 SINE B4 159 205 -87 8 821 237 250 21 0 chr5 30945264 30945312 -121591947 + tRNA-Ala-GCY_ tRNA tRNA 20 68 -7 8 821 297 212 41 133 chr5 30945339 30945356 -121591903 + MT2B LTR ERVL 151 158 -443 8 821 498 238 29 0 chr5 30945356 30945461 -121591798 + B1_Mur2 SINE Alu 1 108 -41 8 821 294 29 0 0 chr5 30945492 30945527 -121591732 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 821 24 0 0 0 chr5 30945529 30945553 -121591706 + AT_rich Low_complexity Low_complexity 1 24 0 8 821 390 42 0 0 chr5 30945597 30945645 -121591614 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 821 240 314 50 121 chr5 30947287 30947428 -121589831 + B4A SINE B4 44 174 -118 8 821 364 217 82 61 chr5 30947357 30947455 -121589804 + PB1D10 SINE Alu 12 111 -6 8 821 241 286 0 0 chr5 30947455 30947511 -121589748 + GA-rich Low_complexity Low_complexity 1 56 0 8 821 243 0 0 0 chr5 30947832 30947859 -121589400 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 8 821 3482 84 27 19 chr5 30947859 30948342 -121588917 - L1_Mus1 LINE L1 -10 6557 6071 8 821 229 255 0 0 chr5 30949214 30949265 -121587994 + RSINE1 SINE B4 84 134 -31 8 821 23 0 0 0 chr5 30949300 30949323 -121587936 + AT_rich Low_complexity Low_complexity 1 23 0 8 821 355 296 0 0 chr5 30949337 30949418 -121587841 + B1F SINE Alu 62 142 -7 8 821 332 119 17 0 chr5 30949584 30949643 -121587616 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 821 261 179 54 0 chr5 30950663 30950719 -121586540 + MIR3 SINE MIR 100 158 -50 8 821 289 300 129 4 chr5 30952454 30952616 -121584643 - MIR SINE MIR -60 208 16 8 821 211 308 0 0 chr5 30952719 30952771 -121584488 - B1_Mus1 SINE Alu -86 62 11 8 821 201 297 87 11 chr5 30954357 30954449 -121582810 + MIR3 SINE MIR 106 204 -4 8 821 1435 167 191 12 chr5 30954527 30954873 -121582386 - RMER17C LTR ERVK -2 408 1 8 821 703 196 79 14 chr5 30955347 30955487 -121581772 + B1_Mur1 SINE Alu 1 149 0 8 821 270 143 0 0 chr5 30956407 30956456 -121580803 + (TTGG)n Simple_repeat Simple_repeat 3 51 0 8 821 303 261 152 9 chr5 30956460 30956572 -121580687 - B1F1 SINE Alu -19 130 3 8 821 519 220 50 10 chr5 30956695 30956796 -121580463 + PB1D10 SINE Alu 13 117 0 8 821 268 231 273 33 chr5 30956796 30956808 -121580451 + B4A SINE B4 138 236 -56 8 821 623 221 54 48 chr5 30960843 30960990 -121576269 - B1_Mur2 SINE Alu 0 149 2 8 821 281 47 23 0 chr5 30961099 30961142 -121576117 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 8 821 320 287 154 17 chr5 30961144 30961261 -121575998 - B1F1 SINE Alu -9 140 8 8 821 22 35 0 0 chr5 30962065 30962094 -121575165 + AT_rich Low_complexity Low_complexity 1 29 0 8 821 2378 99 87 97 chr5 30962255 30962407 -121574852 - RLTR9B2 LTR ERVK 0 420 276 8 821 1154 23 0 8 chr5 30962407 30962539 -121574720 + B1_Mm SINE Alu 2 132 -15 8 821 2378 99 87 97 chr5 30962539 30962583 -121574676 - RLTR9B2 LTR ERVK -145 275 261 8 821 189 0 0 0 chr5 30962583 30962604 -121574655 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 821 2378 99 87 97 chr5 30962604 30962830 -121574429 - RLTR9B2 LTR ERVK -160 260 1 8 821 296 225 88 22 chr5 30962831 30962922 -121574337 + RSINE1 SINE B4 69 165 0 8 821 534 174 51 68 chr5 30963210 30963327 -121573932 - B1_Mur4 SINE Alu -18 132 18 8 821 1745 214 45 55 chr5 30963330 30963805 -121573454 - RLTR1B LTR ERV1 0 512 1 8 821 222 338 0 0 chr5 30964719 30964799 -121572460 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 8 821 2195 217 132 30 chr5 30964875 30965622 -121571637 - RMER13A LTR ERVK 0 860 2 8 821 313 167 6 35 chr5 30965915 30965980 -121571279 - ID2 SINE ID -76 76 11 8 821 295 319 50 7 chr5 30965998 30966137 -121571122 - B1F SINE Alu 0 149 5 8 821 273 119 0 0 chr5 30966201 30966243 -121571016 + (GGA)n Simple_repeat Simple_repeat 3 44 0 8 821 244 355 19 108 chr5 30966331 30966489 -121570770 - FAM SINE Alu -27 284 141 8 821 269 120 40 0 chr5 30966647 30966697 -121570562 + (TTAGGG)n Simple_repeat Simple_repeat 5 56 0 8 821 276 149 0 0 chr5 30966822 30966869 -121570390 + (T)n Simple_repeat Simple_repeat 1 47 0 8 821 1232 41 7 0 chr5 30966874 30967019 -121570240 - B1_Mus2 SINE Alu -1 146 1 8 821 754 291 100 67 chr5 30967274 30967818 -121569441 + RMER13A LTR ERVK 113 697 -211 8 821 516 268 63 0 chr5 30968272 30968290 -121568969 - B1_Mur1 SINE Alu 0 149 132 8 821 200 35 35 0 chr5 30968290 30968319 -121568940 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 8 821 516 268 63 0 chr5 30968319 30968427 -121568832 - B1_Mur1 SINE Alu -18 131 17 8 821 276 77 0 0 chr5 30969599 30969638 -121567621 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 8 821 645 195 130 36 chr5 30969738 30969930 -121567329 - B3 SINE B2 -6 210 1 8 821 452 244 0 0 chr5 30969942 30970024 -121567235 - ID4 SINE ID 0 83 2 8 821 446 198 0 127 chr5 30970036 30970146 -121567113 - B1_Mur1 SINE Alu -2 147 52 8 821 647 274 47 126 chr5 30970146 30970523 -121566736 + RLTR12B LTR ERVK 1 396 -132 8 821 1263 34 0 0 chr5 30970523 30970669 -121566590 + B1_Mm SINE Alu 2 147 0 8 821 647 260 39 138 chr5 30970669 30970720 -121566539 + RLTR12B LTR ERVK 397 451 -77 8 821 318 192 0 0 chr5 30970757 30970809 -121566450 - PB1D9 SINE Alu -64 56 5 8 821 593 146 150 31 chr5 30971164 30971291 -121565968 + B3 SINE B2 75 216 0 8 821 270 346 19 0 chr5 30971304 30971408 -121565851 - PB1D10 SINE Alu -11 106 1 8 821 1089 226 174 26 chr5 30971931 30972281 -121564978 + MTD LTR MaLR 6 407 -12 8 821 278 259 0 0 chr5 30972739 30972793 -121564466 - ID2 SINE ID -3 80 27 8 821 1092 78 50 0 chr5 30973001 30973142 -121564117 + B1_Mus1 SINE Alu 1 148 0 8 821 978 198 40 10 chr5 30973173 30973372 -121563887 + B3 SINE B2 1 205 -11 8 821 22 0 0 0 chr5 30973372 30973394 -121563865 + AT_rich Low_complexity Low_complexity 1 22 0 8 821 816 267 22 44 chr5 30973428 30973635 -121563624 - B3A SINE B2 -13 203 2 9 821 547 287 76 76 chr5 30973636 30973821 -121563438 - B3A SINE B2 -3 195 11 9 821 1252 108 43 0 chr5 30973932 30974117 -121563142 - B2_Mm1a SINE B2 0 193 1 9 821 317 257 14 0 chr5 30974196 30974270 -121562989 - ID4_ SINE ID -4 79 5 9 821 203 315 157 0 chr5 30974399 30974507 -121562752 + MIR3 SINE MIR 59 183 -25 9 821 247 276 44 79 chr5 30975974 30976088 -121561171 + PB1D7 SINE Alu 9 118 -2 9 821 765 181 39 0 chr5 30976186 30976313 -121560946 - B1_Mur2 SINE Alu -17 132 1 9 821 225 0 0 0 chr5 30976343 30976368 -121560891 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9 821 281 309 0 0 chr5 30976926 30976994 -121560265 - ID4_ SINE ID -13 70 3 9 821 34 0 0 0 chr5 30977155 30977189 -121560070 + AT_rich Low_complexity Low_complexity 1 34 0 9 821 350 276 147 0 chr5 30977780 30977896 -121559363 - B4 SINE B4 -158 134 2 9 821 311 299 51 77 chr5 30978022 30978178 -121559081 + MTEb LTR MaLR 228 379 0 9 821 321 226 93 19 chr5 30978196 30978304 -121558955 - PB1D10 SINE Alu -1 116 1 9 821 417 235 35 0 chr5 30978333 30978418 -121558841 - HAL1 LINE L1 -1388 1119 1032 9 821 227 267 117 33 chr5 30978679 30978799 -121558460 - LTR33A_ LTR ERVL -353 178 49 9 821 227 259 0 0 chr5 30978986 30979040 -121558219 - HAL1 LINE L1 -1697 810 757 9 821 412 277 100 55 chr5 30979531 30979932 -121557327 - L1MEg LINE L1 -4688 1396 978 9 821 186 191 0 0 chr5 30980032 30980074 -121557185 + T-rich Low_complexity Low_complexity 1 42 0 9 821 270 256 152 22 chr5 30980078 30980170 -121557089 - PB1D9 SINE Alu -1 119 16 9 821 383 234 73 18 chr5 30980201 30980215 -121557044 + ORR1A3-int LTR MaLR 591 610 -1353 9 821 987 56 0 23 chr5 30980215 30980341 -121556918 + MT2B2 LTR ERVL 1 123 -461 9 821 1323 141 19 10 chr5 30980341 30980549 -121556710 + RLTR13D1 LTR ERVK 1 210 -596 9 821 694 93 0 0 chr5 30980543 30980640 -121556619 + RLTR13D1 LTR ERVK 542 638 -395 9 821 1407 58 0 0 chr5 30980649 30980820 -121556439 + B2_Mm1a SINE B2 1 171 -22 9 821 1257 119 17 0 chr5 30980828 30981005 -121556254 + B2_Mm1t SINE B2 2 181 -12 9 821 378 111 0 65 chr5 30981038 30981150 -121556109 + B2_Mm2 SINE B2 47 187 -8 9 821 464 35 11 0 chr5 30981138 30981202 -121556057 + RLTR13D6 LTR ERVK 625 677 -356 9 821 484 164 0 0 chr5 30981199 30981272 -121555987 + RLTR13D6 LTR ERVK 829 901 -1 9 821 3210 94 20 5 chr5 30981272 30981721 -121555538 + MT2B2 LTR ERVL 117 572 -12 9 821 226 209 276 52 chr5 30981806 30981922 -121555337 - PB1D10 SINE Alu 0 149 8 9 821 213 297 61 81 chr5 30981833 30981932 -121555327 - ID_B1 SINE B4 -46 178 82 9 821 233 273 36 86 chr5 30981953 30981973 -121555286 - L1MEg LINE L1 -5300 784 770 9 821 2422 130 152 23 chr5 30981973 30982414 -121554845 + RLTR19 LTR ERVK 2 499 0 9 821 233 273 36 86 chr5 30982414 30982533 -121554726 - L1MEg LINE L1 -5315 769 652 9 821 531 122 0 0 chr5 30982836 30982926 -121554333 + (TG)n Simple_repeat Simple_repeat 1 90 0 9 821 1013 279 17 38 chr5 30982927 30983214 -121554045 - B4A SINE B4 -11 281 1 9 821 226 268 171 14 chr5 30983221 30983361 -121553898 - L1ME3A LINE L1 -2 6171 6010 9 821 535 257 147 24 chr5 30983535 30983746 -121553513 + MER2 DNA MER2_type 19 255 -90 9 821 234 210 4 60 chr5 30983774 30983845 -121553414 - PB1D10 SINE Alu -50 77 10 9 821 257 321 152 13 chr5 30983840 30983919 -121553340 + MER2 DNA MER2_type 253 342 -3 9 821 744 254 14 19 chr5 30984476 30984685 -121552574 + RMER1B Other Other 8 215 -851 9 821 720 152 68 0 chr5 30985458 30985590 -121551669 + B3 SINE B2 32 172 -44 9 821 2147 101 97 4 chr5 30985593 30985944 -121551315 - RLTR23 LTR ERV1 0 430 1 9 821 983 123 49 27 chr5 30986481 30986665 -121550594 - B2_Mm2 SINE B2 -7 188 1 9 821 4003 155 96 83 chr5 30986665 30987532 -121549727 - RMER19B LTR ERVK -17 885 8 9 821 224 229 0 0 chr5 30987620 30987655 -121549604 - B1F2 SINE Alu -106 43 9 9 821 1286 265 112 0 chr5 30988690 30989030 -121548229 - MTE2b LTR MaLR -1 378 1 9 821 507 33 0 0 chr5 30989517 30989578 -121547681 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 9 821 925 257 28 0 chr5 30989578 30989787 -121547472 - B4A SINE B4 -74 218 4 9 821 749 53 0 31 chr5 30990717 30990815 -121546444 + B2_Mm2 SINE B2 2 96 -99 9 821 360 0 0 0 chr5 30990832 30990872 -121546387 + (GA)n Simple_repeat Simple_repeat 2 41 0 9 821 281 270 26 39 chr5 30991007 30991084 -121546175 - B1F1 SINE Alu -6 143 68 9 821 382 221 123 58 chr5 30991543 30991697 -121545562 + RSINE1 SINE B4 1 164 -1 9 821 29 0 0 0 chr5 30991709 30991738 -121545521 + AT_rich Low_complexity Low_complexity 1 29 0 9 821 1228 172 23 5 chr5 30991847 30992063 -121545196 - URR1A DNA MER1_type 0 226 7 9 821 748 180 72 42 chr5 30992295 30992470 -121544789 - MTC LTR MaLR -41 380 163 9 821 2779 132 37 4 chr5 30992470 30992927 -121544332 - RMER1B Other Other -14 1052 581 9 821 1014 168 109 14 chr5 30992936 30993147 -121544112 - MTC LTR MaLR -190 231 1 9 821 1126 271 32 51 chr5 30993157 30993592 -121543667 - L1MA4 LINE L1 -382 5918 5492 9 821 373 239 21 11 chr5 30993641 30993734 -121543525 - HAL1-3A_ME LINE L1 -789 2069 1976 9 821 272 65 43 0 chr5 30993734 30993780 -121543479 + (TCTG)n Simple_repeat Simple_repeat 4 51 0 9 821 236 254 34 42 chr5 30993781 30993900 -121543359 - RLTR40 LTR ERVK -140 677 560 9 821 404 282 138 24 chr5 30994008 30994175 -121543084 + MLT1B LTR MaLR 193 378 -12 9 821 359 260 0 38 chr5 30995122 30995202 -121542057 + RSINE1 SINE B4 4 80 -85 9 821 198 0 0 0 chr5 30995268 30995290 -121541969 + (CATA)n Simple_repeat Simple_repeat 2 23 0 9 821 1351 63 5 45 chr5 30995611 30995810 -121541449 + RMER10B LTR ERVL 1 191 -207 9 821 22 0 0 0 chr5 30995810 30995832 -121541427 + AT_rich Low_complexity Low_complexity 1 22 0 9 821 15221 52 4 0 chr5 30995836 30998503 -121538756 - L1Md_F2 LINE L1 -1 6581 3905 9 821 186 143 0 0 chr5 30998564 30998599 -121538660 + (TC)n Simple_repeat Simple_repeat 2 36 0 9 821 1116 183 15 5 chr5 30998619 30998822 -121538437 + RMER10B LTR ERVL 194 398 0 9 821 1189 81 0 0 chr5 30999479 30999627 -121537632 - B1_Mus1 SINE Alu 0 148 1 9 821 469 314 8 0 chr5 31000138 31000256 -121537003 - B4A SINE B4 -173 119 1 1 821 439 279 44 58 chr5 31000718 31000855 -121536404 + Charlie1b DNA MER1_type 35 169 -354 2 821 595 249 184 4 chr5 31000906 31001140 -121536119 + Charlie1b DNA MER1_type 248 523 0 2 821 948 112 18 12 chr5 31001156 31001327 -121535932 + (TTTC)n Simple_repeat Simple_repeat 4 175 0 3 821 203 260 0 40 chr5 31001342 31001442 -121535817 + T-rich Low_complexity Low_complexity 2 97 0 4 821 618 269 0 0 chr5 31001628 31001762 -121535497 + ID_B1 SINE B4 82 215 -9 5 821 252 122 0 0 chr5 31001762 31001803 -121535456 + (CAGG)n Simple_repeat Simple_repeat 1 41 0 6 821 623 275 88 20 chr5 31001924 31002128 -121535131 - MTEa LTR MaLR -161 218 1 7 821 189 147 0 0 chr5 31002511 31002545 -121534714 + (TTGG)n Simple_repeat Simple_repeat 1 34 0 8 821 23 33 0 0 chr5 31002658 31002688 -121534571 + AT_rich Low_complexity Low_complexity 1 30 0 9 821 297 333 108 0 chr5 31003001 31003130 -121534129 + ORR1E LTR MaLR 3 145 -214 1 821 2413 44 0 0 chr5 31003294 31003587 -121533672 + ORR1A2 LTR MaLR 1 293 -34 1 821 2301 154 59 34 chr5 31003592 31004197 -121533062 - RMER17A2 LTR ERVK -215 691 1 1 821 335 120 0 0 chr5 31004197 31004237 -121533022 + ORR1A3 LTR MaLR 287 326 0 1 821 312 179 18 0 chr5 31004247 31004303 -121532956 + MTEa LTR MaLR 319 375 -4 1 821 1251 70 0 0 chr5 31004788 31004946 -121532313 + B2_Mm2 SINE B2 1 158 -37 1 821 255 31 0 0 chr5 31004947 31004979 -121532280 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 1 821 1931 165 42 35 chr5 31005044 31005250 -121532009 - RMER10B LTR ERVL 0 398 189 1 821 288 0 0 0 chr5 31005250 31005282 -121531977 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 821 450 0 0 0 chr5 31005282 31005331 -121531928 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 821 1931 165 42 35 chr5 31005331 31005500 -121531759 - RMER10B LTR ERVL -210 188 20 1 821 1409 64 5 16 chr5 31005828 31006018 -121531241 + B2_Mm1t SINE B2 1 188 -5 2 821 492 274 48 13 chr5 31006166 31006312 -121530947 + ID_B1 SINE B4 82 234 -58 2 821 345 248 54 5 chr5 31006974 31007073 -121530186 + PB1D10 SINE Alu 37 138 -11 2 821 608 233 143 0 chr5 31007308 31007497 -121529762 + Lx6 LINE L1 6804 7019 -441 2 821 366 359 31 19 chr5 31007603 31007762 -121529497 + RSINE1 SINE B4 5 165 0 2 821 251 284 10 111 chr5 31007864 31007963 -121529296 + MTE2a LTR MaLR 2 90 -289 2 821 365 291 72 21 chr5 31007973 31008166 -121529093 + L1MC LINE L1 4800 5002 -1144 2 821 583 234 34 7 chr5 31008168 31008314 -121528945 + B1_Mur4 SINE Alu 1 150 0 2 821 2107 204 72 51 chr5 31008408 31008894 -121528365 - RLTR19 LTR ERVK 0 499 4 2 821 271 204 160 20 chr5 31008917 31009017 -121528242 - MTEb LTR MaLR 0 379 266 2 821 276 30 0 0 chr5 31009051 31009084 -121528175 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 821 1259 45 13 0 chr5 31009085 31009242 -121528017 - B2_Mm2 SINE B2 -35 160 2 3 821 490 236 16 147 chr5 31009249 31009433 -121527826 - MTEb LTR MaLR 0 379 220 3 821 279 261 0 88 chr5 31009475 31009656 -121527603 + (CACTG)n Simple_repeat Simple_repeat 1 165 0 3 821 731 248 144 0 chr5 31009681 31009883 -121527376 - MTEb LTR MaLR -146 233 3 3 821 580 183 52 0 chr5 31010917 31011032 -121526227 - B1F2 SINE Alu -24 125 5 3 821 208 330 173 16 chr5 31011893 31012108 -121525151 - MIRb SINE MIR 0 268 19 3 821 203 105 26 26 chr5 31012196 31012235 -121525024 + G-rich Low_complexity Low_complexity 2 40 0 3 821 1039 79 65 0 chr5 31012575 31012714 -121524545 + B1_Mus1 SINE Alu 1 148 0 3 821 348 24 0 0 chr5 31012714 31012755 -121524504 + (A)n Simple_repeat Simple_repeat 1 41 0 3 821 418 239 35 40 chr5 31013323 31013442 -121523817 + PB1D10 SINE Alu 1 114 -3 3 821 360 0 0 0 chr5 31013489 31013529 -121523730 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 821 186 133 0 0 chr5 31014194 31014224 -121523035 + (CCCCCG)n Simple_repeat Simple_repeat 6 35 0 4 821 1041 134 0 7 chr5 31017142 31017292 -121519967 - B1_Mur4 SINE Alu -1 149 1 4 821 235 65 43 0 chr5 31017315 31017361 -121519898 + (TTG)n Simple_repeat Simple_repeat 2 49 0 4 821 632 264 75 6 chr5 31019110 31019270 -121517989 + B4A SINE B4 122 292 0 4 821 299 292 21 21 chr5 31019277 31019406 -121517853 + (CATATA)n Simple_repeat Simple_repeat 3 132 0 4 821 1321 95 15 36 chr5 31019406 31019602 -121517657 + B2_Mm2 SINE B2 1 192 -3 4 821 299 292 21 21 chr5 31019602 31019612 -121517647 + (CATATA)n Simple_repeat Simple_repeat 1 10 0 4 821 507 315 38 57 chr5 31019791 31020000 -121517259 - MLT2C1 LTR ERVL -77 320 116 4 821 446 232 115 39 chr5 31020104 31020234 -121517025 + ID_B1 SINE B4 85 224 0 4 821 631 274 106 6 chr5 31020240 31020420 -121516839 + B3A SINE B2 1 198 0 5 821 432 91 0 0 chr5 31020839 31020905 -121516354 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 821 277 279 37 37 chr5 31021375 31021457 -121515802 + ID4_ SINE ID 1 82 -1 5 821 245 288 41 0 chr5 31021641 31021714 -121515545 - ID4 SINE ID -3 80 5 5 821 788 163 7 0 chr5 31021720 31021873 -121515386 + (CA)n Simple_repeat Simple_repeat 2 155 0 5 821 312 302 82 62 chr5 31021874 31022068 -121515191 - L1ME3A LINE L1 -10 6163 5966 5 821 369 109 0 0 chr5 31022111 31022175 -121515084 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 821 478 292 95 7 chr5 31022216 31022364 -121514895 - RSINE1 SINE B4 -3 162 2 5 821 831 189 14 20 chr5 31022498 31022644 -121514615 - B1_Mur1 SINE Alu -3 146 2 5 821 1111 185 23 23 chr5 31022872 31023088 -121514171 + B3 SINE B2 1 216 0 5 821 557 293 93 48 chr5 31024460 31024729 -121512530 - L1MB7 LINE L1 -15 6169 5889 6 821 381 285 119 52 chr5 31025155 31025360 -121511899 - ORR1E LTR MaLR -111 248 19 6 821 245 242 14 83 chr5 31026626 31026698 -121510561 + MIRb SINE MIR 59 125 -143 6 821 226 254 0 15 chr5 31026829 31026897 -121510362 + MER2 DNA MER2_type 145 211 -134 6 821 632 256 39 0 chr5 31026939 31027068 -121510191 - RSINE1 SINE B4 -29 136 3 6 821 399 194 16 122 chr5 31027073 31027196 -121510063 + MER2 DNA MER2_type 208 317 -28 6 821 34 0 0 0 chr5 31027458 31027492 -121509767 + AT_rich Low_complexity Low_complexity 1 34 0 6 821 1422 75 37 16 chr5 31028012 31028203 -121509056 - B2_Mm2 SINE B2 0 195 1 6 821 1638 165 46 74 chr5 31028396 31028844 -121508415 - ORR1B1 LTR MaLR -8 386 1 6 821 830 232 384 21 chr5 31028992 31029242 -121508017 - MTE2a LTR MaLR -1 378 36 6 821 1397 79 112 10 chr5 31029242 31029447 -121507812 + URR1A DNA MER1_type 1 226 0 6 821 253 288 0 88 chr5 31029447 31029487 -121507772 - MTE2a LTR MaLR -344 35 1 6 821 2588 58 6 0 chr5 31029888 31030213 -121507046 - L1_Mus1 LINE L1 0 6567 6241 7 821 237 304 253 34 chr5 31030563 31030966 -121506293 - L1MC LINE L1 -1247 4899 4408 7 821 204 67 0 0 chr5 31031535 31031565 -121505694 + (CAGG)n Simple_repeat Simple_repeat 4 33 0 7 821 404 290 59 30 chr5 31032441 31032576 -121504683 - B1F1 SINE Alu -5 144 6 7 821 426 85 0 0 chr5 31032849 31032908 -121504351 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 821 433 250 9 36 chr5 31032908 31033020 -121504239 - ID_B1 SINE B4 -31 193 85 7 821 363 316 63 16 chr5 31033069 31033310 -121503949 - L1M5 LINE L1 -686 5508 5255 7 821 199 328 56 76 chr5 31033773 31033971 -121503288 + L2c LINE L2 3108 3301 -86 7 821 542 259 136 50 chr5 31033972 31034252 -121503007 - ORR1E LTR MaLR -5 354 51 7 821 29 47 0 0 chr5 31035766 31035809 -121501450 + AT_rich Low_complexity Low_complexity 1 43 0 7 821 255 267 171 19 chr5 31035912 31036122 -121501137 - L1ME3B LINE L1 -181 6059 5818 8 821 252 0 0 0 chr5 31036229 31036257 -121501002 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 821 599 161 201 47 chr5 31036279 31036448 -121500811 - B3 SINE B2 -20 196 2 8 821 405 0 0 0 chr5 31037021 31037066 -121500193 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 821 967 171 93 42 chr5 31038206 31038703 -121498556 - RMER17C LTR ERVK 0 410 1 8 821 299 206 175 0 chr5 31039011 31039074 -121498185 - ID4_ SINE ID -9 74 1 8 821 753 171 56 12 chr5 31039209 31039358 -121497901 + B3 SINE B2 1 146 -49 8 821 262 209 70 14 chr5 31039786 31039868 -121497391 - ID4 SINE ID -61 91 6 8 821 710 308 101 54 chr5 31041505 31041820 -121495439 - MLT1A0 LTR MaLR -5 360 19 8 821 533 275 136 117 chr5 31042885 31043252 -121494007 - MLT1B LTR MaLR -1 389 16 8 821 291 114 0 0 chr5 31043707 31043751 -121493508 + (A)n Simple_repeat Simple_repeat 1 44 0 9 821 802 148 0 30 chr5 31043751 31043883 -121493376 + B1_Mur1 SINE Alu 22 149 0 9 821 1996 123 195 0 chr5 31045026 31045359 -121491900 - RMER10B LTR ERVL 0 398 1 9 821 1376 231 121 15 chr5 31045593 31045931 -121491328 + MTD LTR MaLR 34 407 -12 9 821 675 191 96 0 chr5 31046172 31046308 -121490951 + B1_Mur1 SINE Alu 1 149 0 9 821 183 208 36 36 chr5 31046598 31046653 -121490606 + MIRc SINE MIR 95 149 -119 9 821 222 338 54 0 chr5 31046724 31046798 -121490461 + PB1D7 SINE Alu 18 95 -25 9 821 765 297 18 36 chr5 31046845 31047078 -121490181 + B4A SINE B4 1 235 -57 9 821 1108 165 75 5 chr5 31047078 31047279 -121489980 + B3 SINE B2 2 216 0 9 821 765 297 18 36 chr5 31047279 31047324 -121489935 + B4A SINE B4 236 273 -19 9 821 782 193 21 0 chr5 31048321 31048466 -121488793 - B1_Mur1 SINE Alu -1 148 1 9 821 578 205 71 0 chr5 31048473 31048585 -121488674 - PB1D7 SINE Alu 0 120 1 1 821 280 279 138 93 chr5 31048905 31049158 -121488101 - RLTR47_MM LTR ERV1 -56 476 242 1 821 459 255 36 9 chr5 31050283 31050394 -121486865 - PB1D9 SINE Alu -6 114 1 1 821 237 222 0 0 chr5 31050538 31050583 -121486676 - L1ME3A LINE L1 -179 5994 5950 1 821 456 241 42 70 chr5 31050644 31050787 -121486472 + B1F1 SINE Alu 1 139 -10 1 821 282 95 0 0 chr5 31050787 31050829 -121486430 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1 821 375 347 20 35 chr5 31051017 31051214 -121486045 - L1ME3A LINE L1 -449 5724 5531 1 821 542 267 80 33 chr5 31051759 31051910 -121485349 - RSINE1 SINE B4 -6 159 2 1 821 288 0 0 0 chr5 31052894 31052926 -121484333 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 821 687 182 27 0 chr5 31052946 31053056 -121484203 - B3 SINE B2 -98 118 6 1 821 652 131 18 27 chr5 31053070 31053180 -121484079 - B1_Mur3 SINE Alu -1 148 40 1 821 551 167 0 0 chr5 31053184 31053298 -121483961 + CT-rich Low_complexity Low_complexity 67 180 0 1 821 280 163 0 39 chr5 31053298 31053349 -121483910 - PB1D9 SINE Alu -61 59 11 1 821 366 225 93 80 chr5 31053415 31053565 -121483694 + MER5B DNA MER1_type 14 165 -13 1 821 196 357 18 0 chr5 31054476 31054532 -121482727 - L3 LINE CR1 -18 4471 4415 1 821 717 183 0 0 chr5 31054592 31054707 -121482552 - B1_Mm SINE Alu -30 117 3 1 821 1228 138 93 5 chr5 31054763 31054967 -121482292 + URR1A DNA MER1_type 5 226 0 1 821 243 0 0 0 chr5 31055394 31055421 -121481838 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 821 578 304 13 26 chr5 31055423 31055575 -121481684 - B3A SINE B2 -48 150 1 1 821 717 257 164 109 chr5 31055867 31056299 -121480960 - MLT1E3 LTR MaLR -18 606 151 1 821 574 264 175 13 chr5 31056493 31056727 -121480532 + B4A SINE B4 4 275 -17 1 821 888 222 35 20 chr5 31056894 31057096 -121480163 - B3 SINE B2 -11 205 1 1 821 1472 28 79 0 chr5 31057230 31057248 -121480011 - B2_Mm1a SINE B2 0 193 176 1 821 207 0 0 0 chr5 31057248 31057271 -121479988 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 821 1472 28 79 0 chr5 31057271 31057430 -121479829 - B2_Mm1a SINE B2 -18 175 3 1 821 242 317 76 67 chr5 31057753 31057976 -121479283 + MIR SINE MIR 2 256 -6 1 821 200 189 27 0 chr5 31057979 31058016 -121479243 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 821 864 130 7 58 chr5 31058051 31058206 -121479053 + B1_Mus1 SINE Alu 2 148 0 1 821 268 212 15 0 chr5 31058788 31058854 -121478405 - L1MD LINE L1 -865 5281 5215 1 821 777 206 7 0 chr5 31058912 31059048 -121478211 - B1_Mur2 SINE Alu -10 139 3 1 821 1230 181 0 24 chr5 31059212 31059422 -121477837 - B3 SINE B2 -10 206 2 1 821 334 310 0 0 chr5 31059755 31059826 -121477433 - PB1D10 SINE Alu -43 74 4 1 821 333 390 0 10 chr5 31059826 31059847 -121477412 - ID_B1 SINE B4 -65 155 65 1 821 322 284 154 47 chr5 31059880 31060179 -121477080 - L1MC LINE L1 -1126 5020 4690 1 821 339 125 42 0 chr5 31060271 31060343 -121476916 + CT-rich Low_complexity Low_complexity 2 76 0 1 821 1068 203 38 5 chr5 31060347 31060560 -121476699 - ID_B1 SINE B4 0 224 5 1 821 1202 55 0 0 chr5 31060601 31060746 -121476513 - B1_Mus2 SINE Alu -2 145 1 1 821 945 62 15 15 chr5 31060821 31060953 -121476306 - RLTR10 LTR ERVK 0 390 259 1 821 265 183 0 0 chr5 31060959 31061019 -121476240 - RLTR10 LTR ERVK -72 318 259 1 821 2224 39 3 111 chr5 31061053 31061397 -121475862 - RLTR10 LTR ERVK -83 307 1 1 821 8583 16 1 2 chr5 31061397 31062393 -121474866 - RLTR10-int LTR ERVK -1 1986 992 1 821 283 297 39 15 chr5 31062477 31062607 -121474652 - RLTR10-int LTR ERVK -5987 1594 1462 1 821 7373 39 10 38 chr5 31062671 31063656 -121473603 - RLTR10-int LTR ERVK -989 998 41 1 821 945 62 15 15 chr5 31063666 31063798 -121473461 - RLTR10 LTR ERVK 0 390 259 1 821 265 183 0 0 chr5 31063804 31063864 -121473395 - RLTR10 LTR ERVK -72 318 259 1 102 2224 39 3 111 chr5 31063898 31064242 -121473017 - RLTR10 LTR ERVK -83 307 1 1 822 204 240 0 0 chr5 31064242 31064292 -121472967 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 822 453 62 0 0 chr5 31064446 31064511 -121472748 - B2_Mm1a SINE B2 -2 191 127 1 822 1178 90 78 0 chr5 31064546 31064713 -121472546 - B2_Mm2 SINE B2 -14 181 2 1 822 891 132 52 0 chr5 31065177 31065313 -121471946 + B1_Mus2 SINE Alu 2 144 -3 1 822 831 271 141 38 chr5 31066142 31066618 -121470641 - L1MB3 LINE L1 -2 6181 5657 1 822 230 289 175 40 chr5 31066635 31066654 -121470605 - ID_B1 SINE B4 -1 223 174 1 822 310 188 198 47 chr5 31066654 31066685 -121470574 - B1F1 SINE Alu -27 122 96 1 822 2809 142 110 23 chr5 31066685 31067212 -121470047 - RMER15 LTR ERVL -2 573 1 1 822 310 188 198 47 chr5 31067212 31067286 -121469973 - B1F1 SINE Alu -54 95 1 1 822 493 232 118 13 chr5 31067321 31067474 -121469785 - Lx8 LINE L1 -4 7469 7301 1 822 769 267 37 52 chr5 31067472 31067741 -121469518 - Lx8 LINE L1 -326 7147 6883 1 822 2153 125 65 20 chr5 31069429 31069780 -121467479 - ORR1B2 LTR MaLR 0 367 1 1 822 479 309 48 19 chr5 31069903 31070111 -121467148 + ID_B1 SINE B4 1 214 -10 1 822 258 241 102 11 chr5 31071729 31071817 -121465442 - MIRb SINE MIR -17 251 156 1 822 228 284 167 0 chr5 31071878 31071980 -121465279 - MIRb SINE MIR -77 191 73 1 822 866 166 14 7 chr5 31072031 31072177 -121465082 - B1_Mus1 SINE Alu -1 147 1 1 822 381 331 40 26 chr5 31072217 31072369 -121464890 - ID_B1 SINE B4 -13 211 58 1 822 268 122 0 47 chr5 31072608 31072645 -121464614 + B1_Mus2 SINE Alu 81 117 -30 1 822 297 0 0 0 chr5 31072645 31072678 -121464581 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 1 822 244 229 0 129 chr5 31072678 31072710 -121464549 + B1_Mur2 SINE Alu 120 143 -6 1 822 23 78 0 0 chr5 31072856 31072907 -121464352 + AT_rich Low_complexity Low_complexity 1 51 0 1 822 1563 47 10 5 chr5 31074011 31074205 -121463054 - B2_Mm2 SINE B2 0 195 1 1 822 450 0 0 0 chr5 31074485 31074535 -121462724 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 822 710 290 49 35 chr5 31074912 31075198 -121462061 + B4A SINE B4 3 292 0 1 822 853 130 270 6 chr5 31075404 31075567 -121461692 - B3 SINE B2 -8 208 3 1 822 1012 176 173 23 chr5 31076055 31076380 -121460879 + MTD LTR MaLR 1 413 -8 1 822 279 348 209 19 chr5 31076922 31077133 -121460126 + MER115 DNA Tip100 112 362 -331 1 822 180 77 0 0 chr5 31077585 31077611 -121459648 + (CCCCAG)n Simple_repeat Simple_repeat 4 29 0 1 822 1242 94 0 6 chr5 31077852 31078023 -121459236 - B2_Mm2 SINE B2 -25 170 1 1 822 280 353 49 0 chr5 31078121 31078223 -121459036 + Kanga2_a DNA Tc2 113 219 -669 1 822 365 141 0 37 chr5 31078434 31078515 -121458744 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 822 297 0 0 0 chr5 31078724 31078757 -121458502 + (TTC)n Simple_repeat Simple_repeat 2 34 0 1 822 207 0 0 0 chr5 31078757 31078780 -121458479 + (TTA)n Simple_repeat Simple_repeat 3 25 0 1 822 243 0 0 0 chr5 31078786 31078813 -121458446 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1 822 1102 75 0 0 chr5 31078813 31078947 -121458312 - B1_Mus1 SINE Alu -13 135 2 1 822 1054 114 0 20 chr5 31079007 31079159 -121458100 + B1_Mur4 SINE Alu 1 149 -1 1 822 186 133 0 0 chr5 31081413 31081443 -121455816 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1 822 489 265 119 68 chr5 31081493 31081728 -121455531 - ORR1E LTR MaLR -105 254 8 1 822 397 207 32 50 chr5 31082397 31082496 -121454763 + PB1D10 SINE Alu 9 104 -13 1 822 608 265 78 21 chr5 31082708 31082901 -121454358 + ID_B1 SINE B4 3 206 -18 1 822 412 355 24 53 chr5 31083086 31083294 -121453965 + MER20 DNA MER1_type 18 219 0 1 822 450 0 0 0 chr5 31083415 31083465 -121453794 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 822 1247 57 0 0 chr5 31083931 31084088 -121453171 - B2_Mm2 SINE B2 -37 158 2 1 822 190 351 61 85 chr5 31084354 31084566 -121452693 + MIRc SINE MIR 37 243 -25 1 822 280 317 109 55 chr5 31084612 31084722 -121452537 + MER5A DNA MER1_type 18 133 -56 1 822 1022 236 118 52 chr5 31087145 31087494 -121449765 - MTEb LTR MaLR 0 379 8 1 822 218 267 17 0 chr5 31087548 31087608 -121449651 + CT-rich Low_complexity Low_complexity 4 64 0 1 822 254 297 81 0 chr5 31088401 31088475 -121448784 + B4A SINE B4 213 292 0 1 822 1459 33 50 0 chr5 31088726 31088906 -121448353 + B2_Mm1a SINE B2 2 190 -3 1 822 793 118 269 12 chr5 31089124 31089295 -121447964 + B3 SINE B2 1 215 -1 1 822 751 224 12 36 chr5 31089437 31089604 -121447655 + RSINE1 SINE B4 3 165 0 1 822 857 0 29 0 chr5 31090079 31090182 -121447077 + (CACAC)n Simple_repeat Simple_repeat 4 109 0 1 822 215 310 102 11 chr5 31090945 31091033 -121446226 - MIRm SINE MIR -170 98 3 1 822 904 199 111 15 chr5 31091273 31091554 -121445705 - MT2A LTR ERVL -8 525 163 1 822 426 121 0 0 chr5 31091554 31091620 -121445639 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 822 379 230 0 26 chr5 31091641 31091717 -121445542 + MT2A LTR ERVL 76 149 -384 1 822 435 216 39 0 chr5 31091717 31091819 -121445440 + (TG)n Simple_repeat Simple_repeat 1 106 0 1 822 671 159 13 13 chr5 31091819 31091972 -121445287 + (TA)n Simple_repeat Simple_repeat 2 154 0 1 822 435 38 0 0 chr5 31091977 31092030 -121445229 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 822 298 291 0 37 chr5 31092326 31092408 -121444851 - PB1D10 SINE Alu -38 79 1 1 822 464 279 110 13 chr5 31092606 31092842 -121444417 - L1M5 LINE L1 -303 5821 5563 1 822 265 236 134 41 chr5 31093130 31093227 -121444032 + Tigger7 DNA MER2_type 29 134 -2357 1 822 571 211 117 0 chr5 31093213 31093341 -121443918 - B1F SINE Alu -1 148 6 1 822 476 265 131 11 chr5 31093360 31093543 -121443716 + Tigger7 DNA MER2_type 2281 2485 -6 1 822 473 288 60 88 chr5 31094129 31094380 -121442879 - MLT1B LTR MaLR -146 244 1 2 822 361 250 168 10 chr5 31094989 31095090 -121442169 - ORR1E LTR MaLR -242 117 1 2 822 427 285 34 81 chr5 31095191 31095205 -121442054 - B3 SINE B2 -27 189 179 2 822 420 111 0 0 chr5 31095205 31095268 -121441991 + (ATGGTG)n Simple_repeat Simple_repeat 1 63 0 2 822 661 214 30 22 chr5 31095268 31095289 -121441970 - B3A SINE B2 -16 182 163 2 822 438 20 0 0 chr5 31095289 31095340 -121441919 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 822 661 214 30 22 chr5 31095340 31095452 -121441807 - B3A SINE B2 -36 162 48 2 822 286 343 39 22 chr5 31098020 31098161 -121439098 + MIRc SINE MIR 9 148 -120 2 822 529 206 0 10 chr5 31098173 31098269 -121438990 + B4 SINE B4 1 95 -197 2 822 382 265 96 20 chr5 31098269 31098462 -121438797 + B3A SINE B2 2 156 -42 2 822 206 272 54 41 chr5 31100249 31100324 -121436935 - MIR SINE MIR -88 180 101 2 822 239 203 0 17 chr5 31100700 31100760 -121436499 + CT-rich Low_complexity Low_complexity 3 61 0 2 822 408 250 70 26 chr5 31100760 31100875 -121436384 - PB1D9 SINE Alu 0 120 1 2 822 192 77 0 0 chr5 31101390 31101416 -121435843 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 822 680 165 47 0 chr5 31102041 31102168 -121435091 - ORR1B1 LTR MaLR -44 350 218 2 822 903 139 8 8 chr5 31102173 31102340 -121434919 - B2_Mm2 SINE B2 -25 168 2 2 822 758 158 204 11 chr5 31102341 31102527 -121434732 - ORR1B1 LTR MaLR -171 223 2 2 822 3828 159 83 13 chr5 31102528 31103279 -121433980 - ORR1B1-int LTR MaLR 0 1509 707 2 822 521 217 50 42 chr5 31103193 31103313 -121433946 - B1_Mus1 SINE Alu -1 147 27 2 822 428 247 0 30 chr5 31103455 31103555 -121433704 + PB1D10 SINE Alu 12 108 -9 2 822 306 125 0 0 chr5 31103600 31103648 -121433611 + (T)n Simple_repeat Simple_repeat 1 48 0 2 822 1328 84 21 16 chr5 31103648 31103841 -121433418 - B2_Mm2 SINE B2 0 195 2 2 822 241 215 104 31 chr5 31103959 31104055 -121433204 + ID_B1 SINE B4 120 222 -2 2 822 312 127 343 9 chr5 31103977 31104091 -121433168 + PB1D7 SINE Alu 14 128 -19 2 822 580 135 310 18 chr5 31104386 31104499 -121432760 - B1_Mur1 SINE Alu -2 147 2 2 822 657 291 13 53 chr5 31105554 31105779 -121431480 + MER20 DNA MER1_type 1 216 -3 2 822 799 268 85 10 chr5 31106882 31106945 -121430314 + L1M4 LINE L1 4351 4419 -1727 2 822 431 322 59 20 chr5 31106945 31107148 -121430111 + B3 SINE B2 2 212 -4 2 822 799 268 85 10 chr5 31107148 31107389 -121429870 + L1M4 LINE L1 4420 4678 -1468 2 822 351 65 0 0 chr5 31107598 31107644 -121429615 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 822 560 275 24 64 chr5 31108099 31108348 -121428911 + L1M4 LINE L1 4872 5110 -1036 2 822 425 19 0 18 chr5 31108348 31108403 -121428856 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 822 2115 139 11 9 chr5 31109371 31109735 -121427524 + ORR1A4 LTR MaLR 6 367 0 2 822 258 276 47 142 chr5 31109685 31109875 -121427384 - ORR1A1 LTR MaLR 0 346 175 2 822 629 178 92 15 chr5 31109810 31109941 -121427318 + B1_Mus1 SINE Alu 7 147 -1 2 822 1871 154 265 47 chr5 31110797 31111149 -121426110 + RLTR20A1 LTR ERVK 15 449 -102 2 822 489 17 0 0 chr5 31111149 31111207 -121426052 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 822 1871 154 22 58 chr5 31111207 31111275 -121425984 + RLTR20A1 LTR ERVK 450 509 -42 2 822 243 287 83 0 chr5 31111315 31111423 -121425836 + L1M4 LINE L1 5186 5302 -844 2 822 497 310 43 17 chr5 31111749 31111982 -121425277 + L1MB2 LINE L1 5587 5825 -346 2 822 435 252 101 0 chr5 31111989 31112108 -121425151 + ID_B1 SINE B4 93 223 -1 2 822 696 285 17 60 chr5 31112152 31112387 -121424872 + B4 SINE B4 2 226 -66 2 822 433 117 19 19 chr5 31112390 31112495 -121424764 + (TCTCTG)n Simple_repeat Simple_repeat 2 106 0 2 822 641 295 158 11 chr5 31112613 31112897 -121424362 + MLT1G-int LTR MaLR 1122 1447 -42 2 822 582 287 72 169 chr5 31112986 31113191 -121424068 + B4A SINE B4 5 221 -71 2 822 564 250 29 7 chr5 31113191 31113328 -121423931 + B1F2 SINE Alu 5 144 -5 2 822 582 287 72 169 chr5 31113328 31113441 -121423818 + B4A SINE B4 222 292 0 2 822 341 22 22 0 chr5 31113557 31113603 -121423656 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 822 327 364 79 7 chr5 31113606 31113758 -121423501 + MLT1G LTR MaLR 109 271 -320 2 822 247 206 202 20 chr5 31113813 31113912 -121423347 + MLT1G LTR MaLR 396 512 -57 2 822 1093 167 22 181 chr5 31114787 31115057 -121422202 + RMER19B LTR ERVK 1 227 -675 2 822 2754 175 58 31 chr5 31115073 31115622 -121421637 + RMER19B LTR ERVK 339 902 0 2 822 292 351 67 7 chr5 31115765 31115900 -121421359 - L2b LINE L2 -8 3367 3225 2 822 180 0 0 0 chr5 31116364 31116384 -121420875 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2 822 417 266 0 0 chr5 31116384 31116478 -121420781 - PB1D7 SINE Alu -13 107 14 2 822 264 59 0 0 chr5 31118053 31118087 -121419172 + (T)n Simple_repeat Simple_repeat 1 34 0 2 822 219 36 0 0 chr5 31119524 31119552 -121417707 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 822 262 292 111 43 chr5 31119972 31120090 -121417169 - MIRc SINE MIR -7 201 79 2 822 1495 72 0 5 chr5 31120669 31120864 -121416395 + B2_Mm2 SINE B2 1 194 -1 2 822 486 278 62 31 chr5 31120880 31121040 -121416219 + MIR SINE MIR 28 192 -70 2 822 261 208 0 0 chr5 31122294 31122342 -121414917 + B1F SINE Alu 96 143 -6 2 822 530 191 79 2 chr5 31122497 31122648 -121414611 + B3 SINE B2 1 169 -26 2 822 394 322 77 92 chr5 31122779 31123039 -121414220 - MamSINE1 SINE tRNA -34 256 1 2 822 420 71 0 0 chr5 31123253 31123309 -121413950 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 822 21 0 0 0 chr5 31123418 31123439 -121413820 + AT_rich Low_complexity Low_complexity 1 21 0 2 822 637 73 208 0 chr5 31123441 31123537 -121413722 + B1_Mus1 SINE Alu 33 148 0 2 822 603 223 15 23 chr5 31123579 31123712 -121413547 + B1_Mur1 SINE Alu 2 133 -16 2 822 419 290 9 0 chr5 31123842 31123949 -121413310 + PB1D10 SINE Alu 1 108 -9 2 822 377 235 32 40 chr5 31124029 31124130 -121413129 - RSINE1 SINE B4 -65 100 1 2 822 317 302 84 9 chr5 31124156 31124263 -121412996 - PB1D10 SINE Alu 0 117 3 2 822 481 290 159 0 chr5 31124263 31124323 -121412936 - ID_B1 SINE B4 -134 90 8 2 822 944 232 35 0 chr5 31124518 31124716 -121412543 + B3 SINE B2 2 206 -10 2 822 1211 81 0 0 chr5 31126207 31126355 -121410904 - B1_Mus1 SINE Alu 0 148 1 2 822 954 69 23 0 chr5 31126355 31126485 -121410774 - B2_Mm2 SINE B2 -3 192 60 2 822 371 202 58 23 chr5 31126483 31126569 -121410690 + MER2B DNA MER2_type 94 182 -154 2 822 288 296 119 54 chr5 31127818 31127986 -121409273 - MER91A DNA Tip100 -10 186 8 2 822 576 29 0 0 chr5 31128727 31128797 -121408462 + (TC)n Simple_repeat Simple_repeat 2 71 0 2 822 254 291 0 0 chr5 31129117 31129172 -121408087 + polypurine Low_complexity Low_complexity 2 56 0 2 822 268 327 48 19 chr5 31129183 31129286 -121407973 - ORR1E LTR MaLR -248 111 6 2 822 695 309 39 5 chr5 31129388 31129593 -121407666 + ID_B1 SINE B4 1 212 -12 2 822 21 0 0 0 chr5 31129676 31129697 -121407562 + AT_rich Low_complexity Low_complexity 1 21 0 2 822 342 122 48 12 chr5 31129903 31129986 -121407273 + (TATG)n Simple_repeat Simple_repeat 4 89 0 2 822 446 262 216 57 chr5 31129987 31130214 -121407045 - B4A SINE B4 -1 291 29 2 822 186 43 0 0 chr5 31130816 31130839 -121406420 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 822 899 168 7 7 chr5 31130848 31130992 -121406267 - B1_Mur2 SINE Alu -5 144 1 2 822 766 223 53 107 chr5 31131035 31131241 -121406018 + B3A SINE B2 1 195 0 2 822 512 206 69 0 chr5 31131314 31131416 -121405843 + PB1D10 SINE Alu 2 110 -7 2 822 270 0 0 0 chr5 31131551 31131581 -121405678 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 822 1858 154 146 19 chr5 31131890 31132007 -121405252 - MTC LTR MaLR 0 421 305 2 822 1663 42 0 0 chr5 31132007 31132199 -121405060 + B2_Mm1t SINE B2 1 192 -1 2 822 1858 154 146 19 chr5 31132199 31132445 -121404814 - MTC LTR MaLR -117 304 13 2 822 7644 45 0 2 chr5 31133570 31134528 -121402731 - L1Md_F2 LINE L1 0 6582 5627 2 822 5321 44 0 0 chr5 31134526 31135187 -121402072 + L1Md_F2 LINE L1 4956 5616 -267 2 822 520 271 108 22 chr5 31135187 31135410 -121401849 - RLTR15 LTR ERVK -117 242 1 2 822 412 176 126 42 chr5 31135410 31135505 -121401754 + B1_Mur2 SINE Alu 46 148 -1 2 822 217 279 0 150 chr5 31135565 31135587 -121401672 + ID SINE ID 4 71 -153 2 822 241 328 0 0 chr5 31135587 31135645 -121401614 + ID4_ SINE ID 13 70 -13 2 822 528 307 90 31 chr5 31135749 31135971 -121401288 + MLT1C LTR MaLR 227 461 -6 2 822 548 299 383 7 chr5 31135969 31136244 -121401015 - MLT1D LTR MaLR -108 397 20 2 822 358 329 71 13 chr5 31136442 31136596 -121400663 + RSINE1 SINE B4 1 163 -2 2 822 1261 97 32 5 chr5 31136704 31136891 -121400368 + B2_Mm1a SINE B2 1 192 -1 2 822 899 101 19 12 chr5 31136899 31137059 -121400200 + (GAAA)n Simple_repeat Simple_repeat 1 161 0 2 822 642 183 311 0 chr5 31137412 31137576 -121399683 + B3 SINE B2 2 216 0 2 822 270 0 0 0 chr5 31137577 31137607 -121399652 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 822 537 206 0 38 chr5 31138107 31138213 -121399046 - PB1D9 SINE Alu -17 103 2 2 822 1049 132 6 23 chr5 31138327 31138498 -121398761 - URR1A DNA MER1_type 0 226 59 2 822 326 267 142 9 chr5 31138603 31138709 -121398550 - ID_B1 SINE B4 -36 188 69 2 822 1993 132 81 0 chr5 31139553 31139885 -121397374 - ORR1B2 LTR MaLR -8 359 1 2 822 182 283 22 0 chr5 31140536 31140582 -121396677 + MER5A DNA MER1_type 140 186 -3 2 822 204 361 89 16 chr5 31141106 31141230 -121396029 + L2c LINE L2 3247 3379 -8 2 822 291 318 33 66 chr5 31141254 31141345 -121395914 + PB1D10 SINE Alu 11 98 -51 2 822 3493 23 5 0 chr5 31141530 31141924 -121395335 - MTA_Mm LTR MaLR 0 396 1 2 822 180 0 0 0 chr5 31142118 31142138 -121395121 + (TCTG)n Simple_repeat Simple_repeat 3 22 0 2 822 334 292 0 0 chr5 31142541 31142613 -121394646 + ID4_ SINE ID 2 73 -10 2 822 548 260 48 11 chr5 31142628 31142802 -121394457 + B3A SINE B2 28 204 -12 3 822 601 254 100 0 chr5 31142844 31142974 -121394285 - RSINE1 SINE B4 -21 144 2 3 822 1305 98 5 0 chr5 31143596 31143780 -121393479 - B2_Mm1t SINE B2 -7 186 2 3 822 1430 164 55 33 chr5 31144538 31144809 -121392450 - MTC LTR MaLR -139 282 6 3 822 428 293 10 10 chr5 31144830 31144930 -121392329 + RSINE1 SINE B4 61 160 -5 3 822 684 129 0 0 chr5 31144942 31145066 -121392193 + (CA)n Simple_repeat Simple_repeat 2 125 0 3 822 278 180 22 0 chr5 31145104 31145172 -121392087 + B3 SINE B2 1 70 -125 3 822 1532 58 5 0 chr5 31145303 31145491 -121391768 + B2_Mm1t SINE B2 2 190 -3 3 822 193 294 44 0 chr5 31145524 31145592 -121391667 - MIRc SINE MIR -4 264 194 3 822 234 0 0 0 chr5 31145757 31145783 -121391476 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 822 719 170 0 0 chr5 31145791 31145903 -121391356 - B1_Mus1 SINE Alu -2 146 35 3 822 226 222 78 16 chr5 31145847 31145911 -121391348 - 4.5SRNA scRNA scRNA -8 86 19 3 822 498 221 43 34 chr5 31146128 31146245 -121391014 - RSINE1 SINE B4 -35 130 13 3 822 632 266 67 18 chr5 31146257 31146468 -121390791 - B3A SINE B2 -7 209 1 3 822 1147 65 0 0 chr5 31146870 31147008 -121390251 + B1_Mus1 SINE Alu 1 138 -10 3 822 248 0 31 0 chr5 31147008 31147040 -121390219 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 3 822 340 314 58 7 chr5 31147050 31147188 -121390071 + ID_B1 SINE B4 79 223 -1 3 822 1301 91 11 0 chr5 31147270 31147446 -121389813 + B2_Mm1t SINE B2 2 179 -14 3 822 376 121 336 75 chr5 31147488 31147595 -121389664 + B2_Mm2 SINE B2 47 181 -14 3 822 232 279 29 14 chr5 31147819 31147888 -121389371 + RSINE1 SINE B4 96 165 0 3 822 642 182 6 103 chr5 31148171 31148336 -121388923 - B1F2 SINE Alu 0 149 1 3 822 995 140 7 0 chr5 31149803 31149946 -121387313 - B1_Mus1 SINE Alu 0 148 5 3 822 189 74 0 0 chr5 31150260 31150287 -121386972 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 822 441 248 111 34 chr5 31150357 31150474 -121386785 - ID_B1 SINE B4 -2 222 97 3 822 1027 244 77 103 chr5 31150505 31150894 -121386365 + MTE2a LTR MaLR 1 379 0 3 822 262 230 134 49 chr5 31150902 31151044 -121386215 + L1MC4a LINE L1 7728 7881 -1 3 822 1151 81 0 26 chr5 31151233 31151385 -121385874 - B1_Mus1 SINE Alu 0 148 1 3 822 601 262 21 0 chr5 31151982 31152123 -121385136 + B3A SINE B2 2 145 -53 3 822 266 152 17 0 chr5 31152127 31152186 -121385073 + CT-rich Low_complexity Low_complexity 4 63 0 3 822 254 270 27 0 chr5 31152190 31152264 -121384995 - PB1D10 SINE Alu 0 117 42 3 822 228 224 0 0 chr5 31153186 31153293 -121383966 + GA-rich Low_complexity Low_complexity 1 107 0 3 822 326 328 77 15 chr5 31153384 31153539 -121383720 + MIRc SINE MIR 6 166 -110 3 822 819 231 12 18 chr5 31154047 31154210 -121383049 - RSINE1 SINE B4 -1 164 3 3 822 1095 231 0 0 chr5 31155151 31155363 -121381896 + B3 SINE B2 1 212 -4 3 822 592 180 114 69 chr5 31155393 31155524 -121381735 + B1_Mus2 SINE Alu 2 138 -9 3 822 429 20 0 0 chr5 31155959 31156009 -121381250 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 822 740 196 30 15 chr5 31156467 31156602 -121380657 + B1_Mur1 SINE Alu 7 143 -6 3 822 190 159 44 22 chr5 31156964 31157009 -121380250 - MIR SINE MIR -194 68 23 3 822 451 148 10 19 chr5 31157380 31157483 -121379776 + CT-rich Low_complexity Low_complexity 2 103 0 3 822 1092 82 7 27 chr5 31157485 31157635 -121379624 - B1_Mus1 SINE Alu 0 148 2 3 822 547 256 98 0 chr5 31157690 31157823 -121379436 - RSINE1 SINE B4 -17 148 3 3 822 1594 47 5 0 chr5 31159388 31159579 -121377680 + B2_Mm1t SINE B2 2 193 0 3 822 336 280 101 18 chr5 31161093 31161202 -121376057 - ID_B1 SINE B4 -105 119 2 3 822 199 316 18 0 chr5 31162290 31162347 -121374912 + L2 LINE L2 2806 2863 -556 3 822 1437 159 32 8 chr5 31162386 31162633 -121374626 - RLTR22_Mur LTR ERVK -5 1843 1591 3 822 5382 75 56 1 chr5 31162854 31163623 -121373636 - RLTR22_Mus LTR ERVK -997 811 1 3 822 318 309 0 0 chr5 31164620 31164701 -121372558 + ID4_ SINE ID 1 81 -2 3 822 257 0 30 0 chr5 31168790 31168823 -121368436 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 822 1065 63 0 47 chr5 31168823 31168966 -121368293 - B1_Mus2 SINE Alu -9 138 3 3 822 542 237 27 55 chr5 31170106 31170325 -121366934 - CYRA11_Mm Unknown Y-chromosome -233 384 172 3 822 1126 108 6 0 chr5 31170150 31170326 -121366933 + URR1B DNA MER1_type 49 225 0 3 822 29 0 0 0 chr5 31170391 31170420 -121366839 + AT_rich Low_complexity Low_complexity 1 29 0 3 822 821 132 15 0 chr5 31171132 31171268 -121365991 + B1_Mur4 SINE Alu 8 145 -5 3 822 1192 43 0 0 chr5 31173358 31173499 -121363760 + B1_Mm SINE Alu 1 141 -6 3 822 186 43 0 0 chr5 31173501 31173524 -121363735 + (GAAAA)n Simple_repeat Simple_repeat 4 26 0 3 822 211 327 230 0 chr5 31177613 31177726 -121359533 + RSINE1 SINE B4 22 160 -5 3 822 1037 78 20 0 chr5 31177766 31177919 -121359340 + B2_Mm1t SINE B2 15 170 -23 3 822 198 321 73 12 chr5 31177931 31178013 -121359246 - MIRc SINE MIR -172 96 10 3 822 267 161 125 0 chr5 31180099 31180155 -121357104 - LTR83 LTR ERVL -61 719 657 3 822 1276 34 0 0 chr5 31180815 31180961 -121356298 + B1_Mm SINE Alu 2 147 0 3 822 247 325 58 50 chr5 31181803 31181923 -121355336 + B4A SINE B4 74 194 -98 3 822 640 184 9 0 chr5 31181829 31181943 -121355316 + B1_Mus2 SINE Alu 9 123 -24 3 822 438 79 40 0 chr5 31181956 31182032 -121355227 + (TC)n Simple_repeat Simple_repeat 1 79 0 3 822 519 88 389 8 chr5 31182032 31182158 -121355101 - B2_Mm2 SINE B2 -20 175 2 3 822 231 36 0 0 chr5 31182287 31182315 -121354944 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 822 492 224 169 71 chr5 31182469 31182623 -121354636 + B3A SINE B2 10 187 -11 3 822 1215 80 79 6 chr5 31183391 31183568 -121353691 + B2_Mm2 SINE B2 2 191 -4 3 822 979 54 105 23 chr5 31183573 31183706 -121353553 + B1_Mus2 SINE Alu 4 147 0 3 822 1201 55 7 0 chr5 31183874 31184020 -121353239 + B1_Mus1 SINE Alu 2 148 0 3 822 783 203 21 0 chr5 31184050 31184193 -121353066 + B1_Mus1 SINE Alu 3 148 0 3 822 1225 48 0 14 chr5 31184234 31184382 -121352877 - B1_Mm SINE Alu -1 146 1 3 822 283 270 134 9 chr5 31184388 31184500 -121352759 + ID_B1 SINE B4 99 224 0 3 822 323 91 0 0 chr5 31184836 31184880 -121352379 - B1_Mus1 SINE Alu -103 45 2 3 822 349 242 97 167 chr5 31185050 31185278 -121351981 - B3 SINE B2 -4 212 1 3 822 525 309 20 12 chr5 31185518 31185767 -121351492 - L1M3 LINE L1 -1407 4733 4483 3 822 846 156 0 17 chr5 31185933 31186109 -121351150 + CT-rich Low_complexity Low_complexity 3 175 0 3 822 768 172 7 20 chr5 31186120 31186268 -121350991 - B1_Mur4 SINE Alu 0 150 5 3 822 412 261 38 98 chr5 31186125 31186308 -121350951 - B4 SINE B4 -68 224 53 3 822 617 89 11 0 chr5 31186390 31186480 -121350779 - B1_Mus2 SINE Alu -4 143 53 3 822 203 302 0 0 chr5 31186540 31186593 -121350666 + (CGTG)n Simple_repeat Simple_repeat 3 55 0 3 822 393 314 124 0 chr5 31186604 31186741 -121350518 - RSINE1 SINE B4 -9 156 3 3 822 1160 65 0 0 chr5 31186770 31186909 -121350350 + B1_Mus2 SINE Alu 2 140 -7 3 822 215 31 0 30 chr5 31186909 31186942 -121350317 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 822 674 63 21 0 chr5 31187133 31187228 -121350031 + (GAAAA)n Simple_repeat Simple_repeat 4 100 0 3 822 2734 55 3 0 chr5 31187430 31187756 -121349503 + ORR1A2 LTR MaLR 1 327 0 3 822 532 269 56 31 chr5 31187808 31187969 -121349290 - RSINE1 SINE B4 0 165 1 3 822 180 0 0 0 chr5 31187987 31188007 -121349252 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 822 876 68 0 0 chr5 31188007 31188124 -121349135 - B1_Mus1 SINE Alu -2 146 30 3 822 527 248 14 7 chr5 31188300 31188438 -121348821 + B1F2 SINE Alu 2 140 -9 3 822 264 245 0 0 chr5 31188686 31188739 -121348520 + L1MB5 LINE L1 5491 5543 -625 3 822 189 107 0 0 chr5 31189021 31189049 -121348210 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 3 822 232 288 17 0 chr5 31189167 31189226 -121348033 + B4 SINE B4 90 149 -143 3 822 270 246 0 0 chr5 31189294 31189351 -121347908 + L1MB5 LINE L1 6070 6126 -48 3 822 229 211 38 19 chr5 31189359 31189412 -121347847 + 5S rRNA rRNA 67 120 -1 3 822 555 14 0 178 chr5 31190455 31190545 -121346714 + tRNA-Tyr-TAC tRNA tRNA 1 74 -2 3 822 610 68 0 0 chr5 31190887 31190961 -121346298 + tRNA-Ala-GCY tRNA tRNA 1 74 -2 3 822 28 48 0 0 chr5 31191540 31191582 -121345677 + GC_rich Low_complexity Low_complexity 1 42 0 3 822 621 279 60 11 chr5 31194399 31194584 -121342675 + B3A SINE B2 2 195 -3 3 823 324 343 20 0 chr5 31199542 31199641 -121337618 + PB1D10 SINE Alu 6 106 -11 3 823 1201 61 0 0 chr5 31199690 31199837 -121337422 - B1_Mus1 SINE Alu 0 148 2 3 823 405 253 10 10 chr5 31200086 31200182 -121337077 - PB1D10 SINE Alu -1 116 21 3 823 963 45 103 22 chr5 31200937 31201073 -121336186 + B1_Mus1 SINE Alu 1 147 -1 4 823 398 219 152 0 chr5 31201954 31202059 -121335200 + ID_B1 SINE B4 85 205 -19 4 823 425 225 45 0 chr5 31203505 31203594 -121333665 - PB1D10 SINE Alu -7 110 18 4 823 300 279 40 61 chr5 31203517 31203616 -121333643 - ID_B1 SINE B4 -45 179 83 4 823 1222 61 0 0 chr5 31204165 31204312 -121332947 - B1_Mus2 SINE Alu 0 147 1 4 823 970 116 45 28 chr5 31204434 31204611 -121332648 + B2_Mm2 SINE B2 14 193 -2 4 823 21 0 0 0 chr5 31204834 31204855 -121332404 + AT_rich Low_complexity Low_complexity 1 21 0 4 823 551 159 111 9 chr5 31206112 31206220 -121331039 - PB1D9 SINE Alu 0 120 2 4 823 754 171 56 21 chr5 31206315 31206458 -121330801 - B1_Mur2 SINE Alu -1 148 1 4 823 1167 51 0 0 chr5 31206572 31206710 -121330549 + B1_Mus2 SINE Alu 1 138 -9 4 823 200 34 0 33 chr5 31206710 31206740 -121330519 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 823 273 295 0 25 chr5 31206906 31206986 -121330273 + ID4_ SINE ID 2 79 -4 4 823 186 71 0 0 chr5 31208887 31208915 -121328344 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 823 471 252 0 0 chr5 31212152 31212251 -121325008 - PB1D10 SINE Alu -10 107 9 4 823 302 0 26 0 chr5 31212368 31212406 -121324853 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 823 1182 128 5 41 chr5 31212455 31212651 -121324608 + B2_Mm1t SINE B2 2 190 -3 4 823 535 142 9 9 chr5 31213767 31213874 -121323385 + CT-rich Low_complexity Low_complexity 1 107 0 4 823 455 181 9 87 chr5 31214278 31214393 -121322866 + PB1D10 SINE Alu 11 116 -1 4 823 259 297 121 48 chr5 31215286 31215410 -121321849 + MIR3 SINE MIR 47 179 -29 4 823 214 179 26 0 chr5 31215741 31215780 -121321479 + GA-rich Low_complexity Low_complexity 3 42 0 4 823 282 87 0 0 chr5 31217159 31217205 -121320054 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 823 235 428 43 0 chr5 31218929 31219067 -121318192 + MIR SINE MIR 38 181 -81 4 823 483 18 0 0 chr5 31219111 31219167 -121318092 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 4 823 1436 74 0 0 chr5 31221888 31222064 -121315195 + B2_Mm2 SINE B2 1 176 -19 4 823 26 30 0 0 chr5 31223879 31223912 -121313347 + GC_rich Low_complexity Low_complexity 1 33 0 4 823 253 238 235 12 chr5 31224602 31224687 -121312572 - PB1D10 SINE Alu 0 117 14 4 823 211 322 186 59 chr5 31225042 31225263 -121311996 - L4 LINE RTE -270 1759 1511 4 823 183 284 27 82 chr5 31225317 31225390 -121311869 + L3 LINE CR1 3120 3188 -1301 4 823 183 100 0 0 chr5 31225749 31225779 -121311480 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 823 813 165 88 35 chr5 31225780 31225976 -121311283 - B3 SINE B2 0 216 29 4 823 460 154 256 0 chr5 31225980 31226097 -121311162 - B3 SINE B2 -4 212 66 4 823 946 207 33 9 chr5 31226100 31226310 -121310949 - B3 SINE B2 0 216 2 4 823 196 200 25 0 chr5 31231019 31231059 -121306200 - MIR SINE MIR -58 150 110 4 823 309 276 10 31 chr5 31231315 31231412 -121305847 + CT-rich Low_complexity Low_complexity 6 100 0 4 823 565 217 72 0 chr5 31231417 31231555 -121305704 - PB1D9 SINE Alu 0 149 2 4 823 297 244 0 95 chr5 31231471 31231566 -121305693 - MT2B LTR ERVL -361 240 155 4 823 454 229 28 0 chr5 31231557 31231676 -121305583 - PB1D10 SINE Alu 0 148 18 4 823 193 338 40 0 chr5 31231696 31231770 -121305489 + MIR3 SINE MIR 119 195 -13 4 823 228 86 0 0 chr5 31233649 31233684 -121303575 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 823 325 290 15 10 chr5 31233684 31233791 -121303468 - PB1D10 SINE Alu -5 115 5 4 823 993 71 50 0 chr5 31234423 31234563 -121302696 + B1_Mus1 SINE Alu 2 148 0 4 823 289 261 90 69 chr5 31234589 31234733 -121302526 + MIR SINE MIR 72 222 -46 4 823 1318 72 28 0 chr5 31234738 31234919 -121302340 + B2_Mm1a SINE B2 1 186 -7 4 823 234 233 0 0 chr5 31234953 31234996 -121302263 + polypurine Low_complexity Low_complexity 3 45 0 4 823 234 91 0 0 chr5 31235146 31235179 -121302080 + (TTA)n Simple_repeat Simple_repeat 1 33 0 4 823 844 106 21 21 chr5 31235220 31235365 -121301894 - B1_Mur4 SINE Alu -1 149 5 4 823 354 259 29 21 chr5 31235660 31235772 -121301487 - B1F SINE Alu -10 139 5 4 823 849 161 47 21 chr5 31237195 31237385 -121299874 + B2_Mm2 SINE B2 1 195 0 4 823 1329 76 43 0 chr5 31237765 31237950 -121299309 + B2_Mm2 SINE B2 2 194 -1 4 823 7622 54 0 0 chr5 31238527 31239502 -121297757 + L1Md_T LINE L1 5608 6582 0 4 823 247 253 20 121 chr5 31239757 31239774 -121297485 + MT2B2 LTR ERVL 152 240 -344 4 823 426 210 0 12 chr5 31239774 31239856 -121297403 + PB1D10 SINE Alu 2 82 -35 4 823 281 280 13 0 chr5 31240126 31240201 -121297058 + Charlie4z DNA MER1_type 89 164 -3 4 823 308 287 102 25 chr5 31240545 31240663 -121296596 - RSINE1 SINE B4 -29 136 10 4 823 382 242 80 10 chr5 31240655 31240755 -121296504 - B4A SINE B4 -63 229 123 4 823 822 252 80 23 chr5 31241301 31241554 -121295705 + B4A SINE B4 2 269 -23 4 823 286 74 18 18 chr5 31241554 31241609 -121295650 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 823 339 258 79 0 chr5 31241875 31241964 -121295295 - PB1D10 SINE Alu -21 96 1 4 823 421 285 7 96 chr5 31241964 31242040 -121295219 - ID SINE ID -143 81 18 4 823 909 169 7 0 chr5 31242080 31242228 -121295031 + B1_Mur4 SINE Alu 2 150 0 4 823 384 119 0 0 chr5 31242230 31242289 -121294970 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 4 823 391 81 11 44 chr5 31242303 31242393 -121294866 + (TATG)n Simple_repeat Simple_repeat 4 90 0 4 823 444 250 0 0 chr5 31242393 31242477 -121294782 - B3 SINE B2 -60 156 73 4 823 1308 119 27 27 chr5 31242478 31242540 -121294719 - URR1A DNA MER1_type -1 225 167 4 823 1380 173 24 166 chr5 31242540 31243004 -121294255 + RMER10B LTR ERVL 1 398 0 4 823 1308 119 27 27 chr5 31243004 31243166 -121294093 - URR1A DNA MER1_type -60 166 1 4 823 375 258 11 33 chr5 31243166 31243245 -121294014 - B3A SINE B2 -117 81 5 4 823 309 321 26 26 chr5 31243383 31243498 -121293761 + PB1 SINE Alu 1 115 -12 4 823 201 147 0 0 chr5 31243996 31244030 -121293229 + (TTG)n Simple_repeat Simple_repeat 3 36 0 4 823 434 217 217 0 chr5 31244071 31244200 -121293059 - RSINE1 SINE B4 -6 159 3 4 823 232 314 29 19 chr5 31244200 31244304 -121292955 + MLT1G1 LTR MaLR 18 122 -447 4 823 281 125 31 0 chr5 31244352 31244416 -121292843 + A-rich Low_complexity Low_complexity 1 66 0 4 823 283 336 88 24 chr5 31244460 31244585 -121292674 + MLT1G1 LTR MaLR 408 540 -39 4 823 429 250 106 0 chr5 31244597 31244729 -121292530 - B1F SINE Alu -3 146 1 4 823 192 40 0 0 chr5 31245367 31245392 -121291867 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 823 540 276 0 27 chr5 31245502 31245651 -121291608 - RSINE1 SINE B4 0 165 21 4 823 591 185 14 97 chr5 31245712 31245847 -121291412 + B3 SINE B2 60 185 -31 4 823 369 0 0 0 chr5 31245847 31245888 -121291371 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 823 626 193 42 0 chr5 31245907 31246026 -121291233 + B1_Mur3 SINE Alu 16 139 -10 4 823 192 97 0 0 chr5 31246027 31246058 -121291201 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 4 823 549 174 156 0 chr5 31246065 31246174 -121291085 - ID_B1 SINE B4 -15 209 84 4 823 306 65 32 16 chr5 31246334 31246397 -121290862 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 4 823 23 0 0 0 chr5 31246459 31246482 -121290777 + AT_rich Low_complexity Low_complexity 1 23 0 4 823 293 0 27 0 chr5 31246801 31246838 -121290421 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 823 248 294 135 0 chr5 31246934 31247060 -121290199 + MIRb SINE MIR 68 210 -58 4 823 300 340 47 7 chr5 31247086 31247234 -121290025 - L3 LINE CR1 -22 4467 4314 4 823 1363 80 5 0 chr5 31248853 31249040 -121288219 + B2_Mm2 SINE B2 1 188 -7 4 823 1161 48 0 7 chr5 31249040 31249186 -121288073 + B1_Mus2 SINE Alu 1 146 -1 4 823 202 0 29 57 chr5 31249187 31249222 -121288037 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 4 823 435 300 47 59 chr5 31249518 31249688 -121287571 + MLT1A0 LTR MaLR 161 328 -37 4 823 674 281 6 17 chr5 31249688 31249869 -121287390 + B3A SINE B2 3 181 -17 4 823 232 140 20 20 chr5 31249909 31249960 -121287299 + MLT1A0 LTR MaLR 350 400 -8 4 823 588 180 32 36 chr5 31250161 31250306 -121286953 + B1F2 SINE Alu 5 146 -3 4 823 760 159 0 42 chr5 31250306 31250450 -121286809 + B1_Mur4 SINE Alu 1 138 -12 4 823 324 0 0 0 chr5 31250450 31250486 -121286773 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 4 823 943 90 8 0 chr5 31250648 31250781 -121286478 - B1_Mus1 SINE Alu 0 148 15 4 823 372 237 47 78 chr5 31250674 31250802 -121286457 - MT2B LTR ERVL -323 278 155 4 823 1307 93 0 15 chr5 31250862 31251058 -121286201 + B2_Mm2 SINE B2 3 195 0 4 823 441 193 0 74 chr5 31253336 31253431 -121283828 + PB1 SINE Alu 26 113 -14 4 823 375 252 199 7 chr5 31253531 31253667 -121283592 + B3 SINE B2 55 216 0 4 823 270 0 0 0 chr5 31254069 31254099 -121283160 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 823 394 309 36 67 chr5 31254710 31254904 -121282355 + B3A SINE B2 11 198 0 4 823 422 234 55 18 chr5 31261348 31261457 -121275802 - PB1D10 SINE Alu -2 115 3 4 823 211 216 0 0 chr5 31261889 31261940 -121275319 + T-rich Low_complexity Low_complexity 4 54 0 4 823 987 350 80 66 chr5 31263370 31264004 -121273255 + MER21B LTR ERV1 166 808 -55 5 823 264 100 0 0 chr5 31264855 31264895 -121272364 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 823 653 118 58 8 chr5 31264905 31265025 -121272234 - B1_Mur4 SINE Alu -2 148 23 5 823 807 138 0 7 chr5 31265106 31265245 -121272014 - B1_Mur4 SINE Alu 0 150 13 5 823 426 301 84 128 chr5 31265318 31265763 -121271496 + RMER20B LTR ERVK 98 570 -57 5 823 1046 153 5 21 chr5 31266139 31266326 -121270933 - B2_Mm2 SINE B2 -10 185 2 5 823 522 269 51 76 chr5 31266359 31266402 -121270857 + B3A SINE B2 2 42 -156 5 823 1856 194 60 8 chr5 31266402 31266802 -121270457 - MTC LTR MaLR 0 421 1 5 823 522 281 46 73 chr5 31266802 31266980 -121270279 + B3A SINE B2 43 214 -2 5 823 470 314 51 5 chr5 31267111 31267306 -121269953 - ID_B1 SINE B4 -19 205 2 5 823 227 293 125 39 chr5 31267306 31267434 -121269825 - MLT1A1 LTR MaLR -267 141 3 5 823 818 9 9 0 chr5 31267597 31267702 -121269557 - B1_Mm SINE Alu 0 147 42 5 823 292 189 78 39 chr5 31267639 31267716 -121269543 - RLTR25B LTR ERVK -519 509 430 5 823 249 108 0 0 chr5 31268396 31268433 -121268826 + (TCC)n Simple_repeat Simple_repeat 3 39 0 5 823 219 259 0 33 chr5 31268457 31268517 -121268742 - B1F1 SINE Alu -39 110 53 5 823 271 297 81 0 chr5 31268557 31268631 -121268628 - PB1D7 SINE Alu -6 114 35 5 823 207 176 0 0 chr5 31268631 31268665 -121268594 + CT-rich Low_complexity Low_complexity 1 34 0 5 823 180 0 0 0 chr5 31268677 31268697 -121268562 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 823 1150 55 0 0 chr5 31269014 31269160 -121268099 + B1_Mus2 SINE Alu 2 147 0 5 823 393 117 0 0 chr5 31269164 31269224 -121268035 + (A)n Simple_repeat Simple_repeat 1 60 0 5 823 425 323 0 45 chr5 31269546 31269679 -121267580 + B1F1 SINE Alu 23 149 0 5 823 25 0 0 0 chr5 31269846 31269871 -121267388 + AT_rich Low_complexity Low_complexity 1 25 0 5 823 606 198 0 0 chr5 31269946 31270123 -121267136 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 823 309 151 0 19 chr5 31270124 31270178 -121267081 + HAL1-3A_ME LINE L1 1978 2030 -828 5 823 623 189 0 11 chr5 31270227 31270409 -121266850 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 823 191 308 74 41 chr5 31271539 31271661 -121265598 - MIRm SINE MIR -101 175 50 5 823 667 249 73 19 chr5 31271685 31271890 -121265369 - ID_B1 SINE B4 -7 217 2 5 823 569 287 0 0 chr5 31272240 31272376 -121264883 + ID_B1 SINE B4 82 217 -7 5 823 4737 114 128 3 chr5 31272887 31273739 -121263520 - RMER17B LTR ERVK 0 958 1 5 823 220 314 43 0 chr5 31274345 31274415 -121262844 + PB1D10 SINE Alu 35 107 -10 5 823 571 153 45 0 chr5 31274442 31274553 -121262706 + B1_Mur4 SINE Alu 34 149 -1 5 823 607 283 68 0 chr5 31274631 31274836 -121262423 - ID_B1 SINE B4 -4 220 2 5 823 185 80 0 0 chr5 31275017 31275042 -121262217 + MIRm SINE MIR 133 157 -119 5 823 579 159 0 0 chr5 31275183 31275296 -121261963 + (TCTA)n Simple_repeat Simple_repeat 4 116 0 5 823 191 146 0 24 chr5 31275296 31275338 -121261921 + CT-rich Low_complexity Low_complexity 4 44 0 5 823 737 153 0 143 chr5 31275338 31275513 -121261746 - B1_Mur4 SINE Alu 0 150 1 5 823 258 32 0 0 chr5 31277993 31278024 -121259235 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 823 297 269 63 21 chr5 31278027 31278122 -121259137 - PB1D10 SINE Alu -14 103 5 5 823 236 339 10 9 chr5 31278649 31278771 -121258488 + MLT2B3 LTR ERVL 5 123 -397 5 823 740 151 8 0 chr5 31278771 31278890 -121258369 + PB1D9 SINE Alu 1 120 0 5 823 284 292 14 137 chr5 31279021 31279160 -121258099 + MTEa LTR MaLR 240 361 -18 5 823 376 365 29 7 chr5 31279307 31279445 -121257814 + MER58A DNA MER1_type 1 141 -83 5 823 683 229 62 0 chr5 31279682 31279826 -121257433 - RSINE1 SINE B4 -10 155 3 5 823 401 0 20 0 chr5 31279956 31280005 -121257254 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 823 976 251 103 24 chr5 31280009 31280262 -121256997 - B4 SINE B4 -14 278 6 5 823 450 226 9 38 chr5 31280276 31280382 -121256877 - ID_B1 SINE B4 0 224 122 5 823 284 215 136 25 chr5 31280579 31280660 -121256599 - B3 SINE B2 -2 214 125 5 823 683 267 41 0 chr5 31280665 31280837 -121256422 - B3 SINE B2 -20 196 18 5 823 295 238 16 0 chr5 31281229 31281292 -121255967 + ID4 SINE ID 20 83 0 5 823 226 211 0 0 chr5 31281467 31281519 -121255740 + C-rich Low_complexity Low_complexity 5 56 0 5 823 1228 61 0 0 chr5 31281923 31282070 -121255189 + B1_Mus2 SINE Alu 1 147 0 5 823 351 0 0 0 chr5 31282083 31282122 -121255137 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 823 625 310 53 48 chr5 31282146 31282353 -121254906 + B3 SINE B2 3 210 -6 5 823 657 215 97 17 chr5 31282478 31282613 -121254646 + ID_B1 SINE B4 41 158 -66 5 823 357 188 62 0 chr5 31282613 31282677 -121254582 + PB1D9 SINE Alu 2 69 -51 5 823 515 169 11 0 chr5 31282771 31282860 -121254399 - MTC LTR MaLR 0 419 330 5 823 930 212 5 49 chr5 31282889 31282912 -121254347 - B2_Mm2 SINE B2 -1 194 173 5 823 454 68 33 22 chr5 31282912 31283002 -121254257 + (TA)n Simple_repeat Simple_repeat 1 91 0 5 823 930 212 5 49 chr5 31283002 31283181 -121254078 - B2_Mm2 SINE B2 -23 172 1 5 823 3942 93 39 5 chr5 31283181 31283741 -121253518 - MT2B2 LTR ERVL -5 579 1 5 823 1967 141 3 59 chr5 31283752 31284092 -121253167 - MTC LTR MaLR -100 321 1 5 823 316 257 95 30 chr5 31284188 31284316 -121252943 + MTE2a LTR MaLR 1 124 -295 5 823 731 174 23 8 chr5 31284305 31284438 -121252821 - B1_Mur1 SINE Alu 0 149 15 5 823 781 294 87 29 chr5 31284443 31284720 -121252539 + MTE2a LTR MaLR 81 373 -6 5 823 294 260 56 65 chr5 31284822 31284929 -121252330 + LTR50 LTR ERVL 77 182 -613 5 823 352 241 24 0 chr5 31285066 31285149 -121252110 + PB1D10 SINE Alu 25 109 -8 5 823 897 238 68 5 chr5 31285163 31285370 -121251889 + ID_B1 SINE B4 2 221 -3 5 823 593 211 0 23 chr5 31285720 31285851 -121251408 + B1F2 SINE Alu 5 132 -17 5 823 877 204 0 0 chr5 31286070 31286217 -121251042 - B1_Mur2 SINE Alu -2 147 1 5 823 1285 181 0 14 chr5 31286786 31287005 -121250254 + B3 SINE B2 1 216 0 5 823 676 187 97 0 chr5 31287020 31287154 -121250105 + B1_Mus1 SINE Alu 1 147 -1 5 823 22 0 0 0 chr5 31287163 31287185 -121250074 + AT_rich Low_complexity Low_complexity 1 22 0 5 823 1319 64 11 11 chr5 31287191 31287365 -121249894 + B2_Mm1a SINE B2 1 174 -19 5 823 234 272 116 58 chr5 31287643 31287729 -121249530 + MT2B LTR ERVL 167 257 -344 5 823 496 238 0 10 chr5 31287657 31287759 -121249500 + B1_Mur4 SINE Alu 35 135 -15 5 823 812 173 0 8 chr5 31287975 31288109 -121249150 + B1_Mus2 SINE Alu 3 135 -12 5 823 383 0 0 21 chr5 31288110 31288158 -121249101 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 5 823 523 167 407 0 chr5 31288232 31288382 -121248877 - B3 SINE B2 -5 211 1 5 823 232 139 0 0 chr5 31288415 31288451 -121248808 + B2_Mm2 SINE B2 7 42 -153 5 823 1215 48 7 0 chr5 31288455 31288600 -121248659 + B1_Mus2 SINE Alu 2 147 0 5 823 1062 113 13 0 chr5 31288623 31288774 -121248485 + B2_Mm1t SINE B2 27 179 -14 5 823 414 101 22 3 chr5 31288789 31288897 -121248362 + B2_Mm2 SINE B2 49 195 0 5 823 28 0 0 0 chr5 31289341 31289369 -121247890 + AT_rich Low_complexity Low_complexity 1 28 0 5 823 738 200 17 70 chr5 31289924 31290096 -121247163 - RSINE1 SINE B4 -1 164 2 5 823 2853 9 28 0 chr5 31290406 31290724 -121246535 + IAPLTR2b LTR ERVK 1 327 0 5 823 729 199 0 35 chr5 31290726 31290867 -121246392 + B1_Mur3 SINE Alu 9 144 -5 5 823 247 267 17 0 chr5 31291071 31291131 -121246128 + B4 SINE B4 220 280 -12 5 823 609 265 23 8 chr5 31291324 31291456 -121245803 + ID_B1 SINE B4 84 217 -7 5 823 501 298 21 21 chr5 31291456 31291600 -121245659 + B1_Mur1 SINE Alu 1 144 -5 5 823 516 311 7 20 chr5 31291631 31291782 -121245477 + B1F2 SINE Alu 1 149 0 5 823 1075 223 165 36 chr5 31292000 31292203 -121245056 + MTD LTR MaLR 1 210 -209 5 823 840 171 7 0 chr5 31292203 31292343 -121244916 + B1_Mur4 SINE Alu 1 141 -9 5 823 396 0 0 0 chr5 31292349 31292393 -121244866 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 823 1075 218 163 28 chr5 31292393 31292545 -121244714 + MTD LTR MaLR 201 406 -13 5 823 300 250 23 45 chr5 31292649 31292737 -121244522 + B3A SINE B2 10 95 -103 5 823 696 156 0 0 chr5 31292742 31292870 -121244389 + CT-rich Low_complexity Low_complexity 2 129 0 5 823 636 132 37 31 chr5 31292873 31293044 -121244215 - RLTR31A_Mm LTR ERVK -169 272 1 5 823 233 267 154 11 chr5 31293044 31293122 -121244137 + B3 SINE B2 114 204 -12 5 823 1957 178 61 3 chr5 31293260 31293621 -121243638 + RLTR14 LTR ERV1 1 382 0 5 823 2032 137 121 11 chr5 31293625 31293980 -121243279 - ORR1B1 LTR MaLR 0 394 1 5 823 306 0 0 0 chr5 31294020 31294054 -121243205 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 823 247 267 48 19 chr5 31294070 31294173 -121243086 - Lx8 LINE L1 -9 7464 7359 5 823 4073 123 70 17 chr5 31294196 31294891 -121242368 - RMER6A LTR ERVK 0 756 25 5 823 218 266 134 31 chr5 31294922 31295019 -121242240 - PB1D10 SINE Alu 0 117 11 5 823 1309 91 42 21 chr5 31295110 31295301 -121241958 + B2_Mm2 SINE B2 1 195 0 5 823 448 198 65 21 chr5 31296068 31296161 -121241098 + B1F SINE Alu 28 124 -25 5 823 738 248 6 25 chr5 31296327 31296488 -121240771 - RSINE1 SINE B4 0 165 8 5 823 313 224 0 0 chr5 31296689 31296756 -121240503 + ID4 SINE ID 1 67 -16 6 823 556 214 0 0 chr5 31296827 31296930 -121240329 + PB1D10 SINE Alu 1 103 -14 6 823 300 243 0 51 chr5 31296936 31297014 -121240245 + G-rich Low_complexity Low_complexity 1 74 0 6 823 305 323 162 71 chr5 31297014 31297297 -121239962 + MLT1L LTR MaLR 102 410 -200 6 823 517 326 34 7 chr5 31298425 31298573 -121238686 - RSINE1 SINE B4 -3 162 11 6 823 493 274 78 46 chr5 31298644 31298797 -121238462 + B3 SINE B2 23 180 -36 6 823 659 169 79 16 chr5 31298791 31298917 -121238342 + B1_Mur4 SINE Alu 17 150 0 6 823 198 0 0 0 chr5 31298923 31298945 -121238314 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 6 823 27 0 0 0 chr5 31298966 31298993 -121238266 + AT_rich Low_complexity Low_complexity 1 27 0 6 823 4231 48 2 4 chr5 31299031 31299535 -121237724 - RLTR1C LTR ERV1 0 503 1 6 823 552 198 10 30 chr5 31299587 31299686 -121237573 - B1_Mur3 SINE Alu -52 97 1 6 823 1166 69 0 0 chr5 31299858 31300003 -121237256 + B1_Mus1 SINE Alu 1 145 -3 6 823 560 156 9 0 chr5 31300007 31300116 -121237143 + GA-rich Low_complexity Low_complexity 3 112 0 6 823 260 332 139 43 chr5 31300125 31300333 -121236926 + MLT1N2 LTR MaLR 335 562 0 6 823 859 73 186 0 chr5 31300355 31300479 -121236780 - B1_Mm SINE Alu 0 147 1 6 823 374 224 0 13 chr5 31300578 31300655 -121236604 + B3A SINE B2 1 76 -122 6 823 501 244 95 29 chr5 31300822 31300988 -121236271 + B3A SINE B2 30 192 -6 6 823 875 145 7 7 chr5 31301303 31301442 -121235817 - B1_Mur2 SINE Alu -10 139 1 6 823 550 165 22 5 chr5 31301608 31301714 -121235545 - PB1D9 SINE Alu -22 128 24 6 823 749 217 0 28 chr5 31301748 31301890 -121235369 + B1_Mur1 SINE Alu 12 149 0 6 823 234 0 0 0 chr5 31301890 31301916 -121235343 + (A)n Simple_repeat Simple_repeat 1 26 0 6 823 758 119 18 0 chr5 31301921 31302030 -121235229 + PB1D9 SINE Alu 1 111 -9 6 823 1545 166 61 14 chr5 31302133 31302426 -121234833 - RMER5 LTR ERV1 -5 529 223 6 823 377 276 0 0 chr5 31302450 31302548 -121234711 + B3A SINE B2 21 118 -80 6 823 244 226 63 16 chr5 31302871 31302934 -121234325 + BLACKJACK DNA AcHobo 2141 2206 -738 6 823 1031 266 46 26 chr5 31302940 31303245 -121234014 - Lx8 LINE L1 -724 6749 6439 6 823 510 238 0 137 chr5 31303350 31303467 -121233792 - B1F SINE Alu 0 117 17 6 823 495 248 9 0 chr5 31303467 31303572 -121233687 - ID_B1 SINE B4 -26 198 93 6 823 461 250 8 40 chr5 31303591 31303716 -121233543 - ID_B1 SINE B4 -1 223 103 6 823 1095 84 168 0 chr5 31303749 31303916 -121233343 - B2_Mm2 SINE B2 0 195 1 6 823 661 218 30 0 chr5 31304088 31304221 -121233038 + B3 SINE B2 80 216 0 6 823 279 315 68 0 chr5 31304320 31304393 -121232866 + ID4_ SINE ID 2 79 -4 6 823 370 160 198 10 chr5 31304630 31304731 -121232528 - PB1D9 SINE Alu 0 120 1 6 823 1213 65 100 6 chr5 31304800 31304970 -121232289 + B2_Mm2 SINE B2 2 187 -8 6 823 504 105 0 0 chr5 31305749 31305825 -121231434 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 823 845 157 0 7 chr5 31305836 31305971 -121231288 - B1_Mur2 SINE Alu -15 134 1 6 823 413 216 105 8 chr5 31305972 31306079 -121231180 - B3A SINE B2 -2 214 100 6 823 731 160 48 0 chr5 31306079 31306204 -121231055 + B1_Mur4 SINE Alu 4 134 -16 6 823 412 330 57 66 chr5 31306828 31307285 -121229974 + MER52-int LTR ERV1 4664 5116 -1975 6 823 261 75 0 0 chr5 31307648 31307688 -121229571 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 6 823 1993 154 58 6 chr5 31307756 31308115 -121229144 - ORR1C1 LTR MaLR 0 378 1 6 823 255 342 62 44 chr5 31308127 31308402 -121228857 + MER52-int LTR ERV1 5606 5885 -1206 6 823 204 86 0 54 chr5 31308793 31308830 -121228429 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 6 823 876 189 57 38 chr5 31308831 31309040 -121228219 + ORR1C2 LTR MaLR 172 384 0 6 823 407 291 83 25 chr5 31309204 31309324 -121227935 + B1F SINE Alu 1 127 -22 6 823 458 308 38 15 chr5 31309395 31309527 -121227732 - B1F SINE Alu -5 144 10 6 823 230 0 33 0 chr5 31309674 31309704 -121227555 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 823 958 174 0 0 chr5 31309729 31309878 -121227381 - B1_Mur3 SINE Alu 0 149 1 6 823 530 232 50 72 chr5 31309910 31310049 -121227210 - ID_B1 SINE B4 -18 206 71 6 823 1310 75 0 70 chr5 31310401 31310602 -121226657 + B2_Mm2 SINE B2 9 195 0 6 823 1890 172 42 64 chr5 31310709 31310928 -121226331 - Lx9 LINE L1 -293 7351 7146 6 823 1478 168 93 29 chr5 31310928 31311313 -121225946 + RMER17C LTR ERVK 1 410 0 6 823 1890 172 42 64 chr5 31311313 31311497 -121225762 - Lx9 LINE L1 -499 7145 6957 6 823 483 87 0 0 chr5 31311542 31311611 -121225648 - B1_Mur4 SINE Alu 0 150 82 6 823 204 0 26 53 chr5 31311710 31311748 -121225511 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 6 823 1167 34 7 46 chr5 31311748 31311901 -121225358 - B1_Mus2 SINE Alu 0 147 1 6 823 756 154 17 0 chr5 31311910 31312027 -121225232 + B1_Mur1 SINE Alu 18 136 -13 6 823 521 231 76 14 chr5 31312041 31312186 -121225073 - RLTR42-int LTR ERVK -4150 1372 1219 6 823 330 161 18 0 chr5 31312321 31312377 -121224882 - RLTR11A2 LTR ERVK -25 502 446 6 823 1286 54 0 46 chr5 31312378 31312538 -121224721 + B2_Mm2 SINE B2 2 161 -34 6 823 351 0 0 0 chr5 31312538 31312577 -121224682 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 6 823 1286 54 0 46 chr5 31312577 31312591 -121224668 + B2_Mm2 SINE B2 162 168 -27 6 823 1921 206 61 16 chr5 31312584 31313028 -121224231 - RLTR11A2 LTR ERVK -63 464 1 6 823 447 281 145 45 chr5 31313516 31313695 -121223564 + B3A SINE B2 1 197 -1 6 823 562 189 197 0 chr5 31313726 31313848 -121223411 + B1_Mus2 SINE Alu 1 146 -1 6 823 236 27 0 0 chr5 31313989 31314026 -121223233 + L1Md_T LINE L1 6544 6580 -2 6 823 418 291 42 85 chr5 31314322 31314339 -121222920 + B4 SINE B4 65 220 -70 6 823 752 201 14 48 chr5 31314339 31314485 -121222774 + B1_Mur3 SINE Alu 3 143 -6 6 823 219 69 0 0 chr5 31315131 31315160 -121222099 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 823 1021 128 73 0 chr5 31315492 31315656 -121221603 - B2_Mm1t SINE B2 -16 177 2 6 823 2227 238 73 50 chr5 31315902 31316539 -121220720 + RLTR18 LTR ERVK 1 568 -48 6 823 846 173 0 7 chr5 31316759 31316899 -121220360 + B1_Mur4 SINE Alu 2 140 -10 6 823 318 26 0 0 chr5 31316899 31316938 -121220321 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 823 349 229 132 0 chr5 31317091 31317182 -121220077 - RLTR42-int LTR ERVK -3774 1748 1639 6 823 913 138 0 0 chr5 31317833 31317963 -121219296 + B1_Mus2 SINE Alu 1 130 -17 6 823 609 14 0 0 chr5 31317985 31318055 -121219204 + (GGAA)n Simple_repeat Simple_repeat 4 73 0 6 823 200 231 0 19 chr5 31318097 31318150 -121219109 + CT-rich Low_complexity Low_complexity 1 52 0 6 823 1522 169 44 74 chr5 31319191 31319212 -121218047 - RLTR14 LTR ERV1 -47 335 319 6 823 510 31 0 0 chr5 31319212 31319276 -121217983 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 823 1522 169 44 74 chr5 31319276 31319438 -121217821 - RLTR14 LTR ERV1 -64 318 162 6 823 1255 41 0 0 chr5 31319438 31319585 -121217674 - B1_Mus2 SINE Alu 0 147 1 6 823 1522 169 44 74 chr5 31319585 31319739 -121217520 - RLTR14 LTR ERV1 -221 161 7 6 823 241 266 66 74 chr5 31319794 31319916 -121217343 + Charlie5 DNA MER1_type 493 613 -2011 6 823 1264 132 84 80 chr5 31319916 31320145 -121217114 - RLTR14-int LTR ERV1 -268 5049 4808 6 823 764 68 245 69 chr5 31320145 31320304 -121216955 - B2_Mm2 SINE B2 -8 187 1 6 823 14285 173 147 64 chr5 31320304 31321272 -121215987 - RLTR14-int LTR ERV1 -510 4807 3693 6 823 3923 124 131 8 chr5 31321272 31321928 -121215331 + RMER19A LTR ERVK 1 737 0 6 823 14285 174 72 63 chr5 31321928 31322277 -121214982 - RLTR14-int LTR ERV1 -1625 3692 3349 6 823 1345 64 40 6 chr5 31322277 31322451 -121214808 + B2_Mm2 SINE B2 2 181 -14 6 823 288 70 0 0 chr5 31322451 31322494 -121214765 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 823 1054 75 0 7 chr5 31322495 31322630 -121214629 - B1_Mus2 SINE Alu -12 135 2 6 823 14285 174 72 63 chr5 31322630 31323330 -121213929 - RLTR14-int LTR ERV1 -1969 3348 2660 6 823 955 83 105 0 chr5 31323330 31323463 -121213796 - B1_Mus2 SINE Alu 0 147 1 6 823 14285 174 72 63 chr5 31323463 31324400 -121212859 - RLTR14-int LTR ERV1 -2658 2659 1743 6 823 1642 52 0 0 chr5 31324400 31324592 -121212667 - B2_Mm1t SINE B2 0 193 2 6 823 14285 174 72 63 chr5 31324592 31324817 -121212442 - RLTR14-int LTR ERV1 -3575 1742 1536 6 823 296 243 42 14 chr5 31324826 31324897 -121212362 + RLTR14-int LTR ERV1 1912 1984 -3333 6 102 6563 165 72 102 chr5 31324893 31326478 -121210781 - RLTR14-int LTR ERV1 -3779 1538 2 6 824 2182 142 18 40 chr5 31326490 31326870 -121210389 - RLTR14 LTR ERV1 -10 372 1 6 824 926 180 122 33 chr5 31327140 31327331 -121209928 + RLTR33 LTR ERVK 1 210 -468 6 824 3615 150 72 55 chr5 31327331 31327655 -121209604 + RMER19A LTR ERVK 1 356 -381 6 824 1308 27 0 0 chr5 31327655 31327802 -121209457 + B1_Mm SINE Alu 1 147 0 6 824 3615 150 72 55 chr5 31327802 31328184 -121209075 + RMER19A LTR ERVK 357 719 -18 6 824 1150 68 0 33 chr5 31328184 31328337 -121208922 + B1_Mus1 SINE Alu 1 148 0 6 824 203 79 0 26 chr5 31328350 31328389 -121208870 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 824 1416 84 5 5 chr5 31328400 31328591 -121208668 + B2_Mm1a SINE B2 2 192 -1 6 824 236 0 0 0 chr5 31328591 31328618 -121208641 + RMER19A LTR ERVK 711 737 0 6 824 1902 157 142 42 chr5 31328618 31329049 -121208210 + RLTR33 LTR ERVK 205 678 0 6 824 212 95 71 0 chr5 31329249 31329291 -121207968 + T-rich Low_complexity Low_complexity 1 45 0 6 824 426 180 158 26 chr5 31329291 31329405 -121207854 - B1_Mus2 SINE Alu 0 147 19 6 824 341 225 28 59 chr5 31329482 31329584 -121207675 - PB1D9 SINE Alu -1 148 33 6 824 379 313 10 0 chr5 31329686 31329785 -121207474 - RSINE1 SINE B4 -31 134 35 6 824 296 167 0 0 chr5 31329793 31329835 -121207424 - PB1D9 SINE Alu -77 43 2 6 824 1243 27 7 0 chr5 31330012 31330158 -121207101 - B1_Mus2 SINE Alu 0 147 1 6 824 1504 57 5 10 chr5 31330240 31330435 -121206824 - B2_Mm2 SINE B2 0 195 2 6 824 420 165 17 42 chr5 31330600 31330720 -121206539 + CT-rich Low_complexity Low_complexity 5 121 0 6 824 406 322 6 80 chr5 31330761 31330923 -121206336 - B4A SINE B4 -132 160 11 6 824 942 157 0 0 chr5 31331123 31331270 -121205989 - B1_Mus1 SINE Alu 0 148 2 6 824 318 125 277 15 chr5 31331281 31331346 -121205913 - ID4 SINE ID -1 82 1 7 824 313 266 106 131 chr5 31331354 31331553 -121205706 - L1MC4 LINE L1 -1037 7005 6812 7 824 793 179 57 0 chr5 31331568 31331708 -121205551 - B1_Mur3 SINE Alu -1 148 1 7 824 241 321 12 12 chr5 31331745 31331827 -121205432 - L1MC4 LINE L1 -1108 6774 6693 7 824 209 217 0 0 chr5 31331851 31331897 -121205362 + (TA)n Simple_repeat Simple_repeat 1 46 0 7 824 359 262 177 149 chr5 31331971 31332053 -121205206 - ID_B1 SINE B4 -3 221 148 7 824 511 236 174 33 chr5 31332053 31332237 -121205022 - B3 SINE B2 -5 211 2 7 824 359 262 177 149 chr5 31332237 31332369 -121204890 - ID_B1 SINE B4 -77 147 1 7 824 391 198 240 0 chr5 31332888 31332984 -121204275 + PB1D10 SINE Alu 4 122 -5 7 824 273 133 0 62 chr5 31333108 31333156 -121204103 + B1_Mur4 SINE Alu 97 141 -9 7 824 180 77 0 0 chr5 31333161 31333187 -121204072 + (C)n Simple_repeat Simple_repeat 1 26 0 7 824 207 0 0 0 chr5 31333661 31333684 -121203575 + (A)n Simple_repeat Simple_repeat 1 23 0 7 824 863 166 14 0 chr5 31333889 31334034 -121203225 - B1_Mur4 SINE Alu -3 147 1 7 824 699 219 7 35 chr5 31334062 31334204 -121203055 + B1_Mur2 SINE Alu 5 142 -7 7 824 1091 79 7 0 chr5 31334222 31334347 -121202912 + B1_Mus2 SINE Alu 1 125 -22 7 824 198 71 0 0 chr5 31334347 31334375 -121202884 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 824 1091 79 7 0 chr5 31334375 31334389 -121202870 + B1_Mus2 SINE Alu 126 139 -8 7 824 357 24 0 0 chr5 31334391 31334433 -121202826 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 7 824 453 286 17 8 chr5 31334559 31334679 -121202580 + ID_B1 SINE B4 6 126 -98 7 824 671 115 164 0 chr5 31334695 31334817 -121202442 + B1_Mus1 SINE Alu 6 147 -1 7 824 1338 85 11 0 chr5 31334820 31334996 -121202263 + B2_Mm1t SINE B2 2 179 -14 7 824 364 111 367 9 chr5 31335047 31335156 -121202103 + B2_Mm2 SINE B2 47 194 -1 7 824 230 282 13 13 chr5 31335184 31335263 -121201996 + ID_B1 SINE B4 143 221 -3 7 824 927 131 14 7 chr5 31335641 31335787 -121201472 + B1_Mur2 SINE Alu 1 147 -2 7 824 428 248 228 6 chr5 31336118 31336280 -121200979 + B3A SINE B2 1 198 0 7 824 198 0 0 0 chr5 31336702 31336724 -121200535 + (T)n Simple_repeat Simple_repeat 1 22 0 7 824 1167 75 0 0 chr5 31336724 31336870 -121200389 - B1_Mus2 SINE Alu 0 147 2 7 824 587 276 82 11 chr5 31336920 31337103 -121200156 - B3A SINE B2 0 198 3 7 824 284 298 21 11 chr5 31337211 31337306 -121199953 + PB1 SINE Alu 18 113 -14 7 824 365 265 118 28 chr5 31337334 31337595 -121199664 + RLTR12B LTR ERVK 1 311 -217 7 824 559 288 46 0 chr5 31340695 31340848 -121196411 + RSINE1 SINE B4 2 161 -4 7 824 709 213 0 7 chr5 31340874 31341011 -121196248 - B1_Mus1 SINE Alu -1 147 12 7 824 1085 116 7 0 chr5 31341012 31341158 -121196101 + B1_Mus1 SINE Alu 2 148 0 7 824 687 171 56 28 chr5 31344059 31344203 -121193056 + B1_Mur2 SINE Alu 1 148 -1 7 824 651 88 0 0 chr5 31344733 31344824 -121192435 - BC1_Mm scRNA scRNA -61 91 1 7 824 1100 173 66 0 chr5 31346531 31346728 -121190531 + B3 SINE B2 1 210 -6 7 824 321 26 0 0 chr5 31347347 31347385 -121189874 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 824 1102 64 43 0 chr5 31348034 31348175 -121189084 + B1_Mus2 SINE Alu 1 147 0 7 824 243 88 0 0 chr5 31348175 31348209 -121189050 + (A)n Simple_repeat Simple_repeat 1 34 0 7 824 437 229 0 0 chr5 31348286 31348369 -121188890 - B1_Mur1 SINE Alu 0 149 67 7 824 302 228 36 90 chr5 31348410 31348521 -121188738 + B3 SINE B2 2 106 -110 7 824 402 69 0 0 chr5 31348546 31348604 -121188655 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 824 284 288 18 46 chr5 31349018 31349127 -121188132 + MT2B2 LTR ERVL 152 257 -327 7 824 563 203 70 8 chr5 31349039 31349168 -121188091 + B1_Mm SINE Alu 11 147 0 7 824 1214 41 14 0 chr5 31349170 31349315 -121187944 + B1_Mus2 SINE Alu 1 147 0 7 824 359 139 148 25 chr5 31349351 31349432 -121187827 + PB1D9 SINE Alu 27 117 -3 7 824 219 321 9 19 chr5 31350434 31350542 -121186717 + (CCCCG)n Simple_repeat Simple_repeat 2 108 0 7 824 183 80 0 0 chr5 31350584 31350609 -121186650 + (CTCGG)n Simple_repeat Simple_repeat 2 26 0 7 824 639 0 0 0 chr5 31351458 31351529 -121185730 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 7 824 675 265 32 21 chr5 31352260 31352283 -121184976 - B3A SINE B2 -5 193 171 7 824 201 39 0 0 chr5 31352283 31352309 -121184950 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 7 824 675 265 32 21 chr5 31352309 31352474 -121184785 - B3A SINE B2 -28 170 3 7 824 681 191 55 28 chr5 31352574 31352719 -121184540 - B1F1 SINE Alu 0 149 1 7 824 456 220 10 10 chr5 31352721 31352822 -121184437 - PB1D10 SINE Alu 0 117 17 7 824 350 274 19 9 chr5 31352740 31352847 -121184412 - ID_B1 SINE B4 -45 179 72 7 824 234 0 0 0 chr5 31352937 31352963 -121184296 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7 824 800 136 0 16 chr5 31352975 31353102 -121184157 - B2_Mm2 SINE B2 -70 125 1 7 824 657 187 114 0 chr5 31353107 31353230 -121184029 - B1_Mus1 SINE Alu -2 146 10 7 824 268 103 0 0 chr5 31353299 31353338 -121183921 + B1_Mus2 SINE Alu 2 40 -107 7 824 216 158 0 0 chr5 31353360 31353398 -121183861 + A-rich Low_complexity Low_complexity 1 38 0 7 824 291 261 21 83 chr5 31353464 31353560 -121183699 + PB1D9 SINE Alu 26 115 -5 7 824 413 192 0 13 chr5 31353483 31353562 -121183697 + ID_B1 SINE B4 144 221 -3 7 824 252 254 28 14 chr5 31353572 31353644 -121183615 + B1F SINE Alu 5 77 -72 7 824 1002 24 0 0 chr5 31353670 31353795 -121183464 - B1_Mus1 SINE Alu 0 148 24 7 824 584 167 10 0 chr5 31353793 31353895 -121183364 + B1_Mus2 SINE Alu 33 135 -12 7 824 243 0 0 0 chr5 31353895 31353922 -121183337 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 7 824 1381 96 16 0 chr5 31354084 31354272 -121182987 + B2_Mm2 SINE B2 2 192 -3 7 824 225 333 0 15 chr5 31355024 31355091 -121182168 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 7 824 216 97 0 0 chr5 31355420 31355451 -121181808 + (T)n Simple_repeat Simple_repeat 1 31 0 7 824 1106 48 0 93 chr5 31355451 31355613 -121181646 - B1_Mus2 SINE Alu 0 147 1 7 824 687 201 7 21 chr5 31355617 31355759 -121181500 - B1_Mur4 SINE Alu -2 148 9 7 824 537 221 94 14 chr5 31355790 31355928 -121181331 - B1_Mur3 SINE Alu 0 149 1 7 824 300 143 89 0 chr5 31356007 31356063 -121181196 - 5S rRNA rRNA -32 89 29 7 824 1007 67 97 0 chr5 31356069 31356203 -121181056 + B1_Mus2 SINE Alu 1 147 0 7 824 375 154 0 0 chr5 31356203 31356268 -121180991 + A-rich Low_complexity Low_complexity 1 65 0 7 824 423 339 8 45 chr5 31358049 31358084 -121179175 + CYRA11_Mm Unknown Y-chromosome 155 347 -270 7 824 838 210 58 29 chr5 31358084 31358290 -121178969 - URR1B DNA MER1_type -13 212 1 7 824 377 186 43 31 chr5 31358588 31358698 -121178561 - PB1D9 SINE Alu -31 118 13 7 824 1269 27 0 7 chr5 31358732 31358879 -121178380 - B1_Mm SINE Alu 0 147 2 7 824 234 156 0 0 chr5 31358880 31358925 -121178334 + T-rich Low_complexity Low_complexity 1 45 0 7 824 2376 92 35 12 chr5 31358932 31359273 -121177986 - L1_Mus3 LINE L1 -6 6632 6284 7 824 792 160 7 71 chr5 31359280 31359435 -121177824 - B1_Mur4 SINE Alu -5 145 1 7 824 225 188 194 18 chr5 31359610 31359680 -121177579 - B1F2 SINE Alu -56 93 20 7 824 219 36 0 0 chr5 31359723 31359751 -121177508 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 824 383 185 49 0 chr5 31359753 31359834 -121177425 - B1_Mus2 SINE Alu -6 141 57 7 824 266 275 62 0 chr5 31361697 31361777 -121175482 - RSINE1 SINE B4 -52 113 29 7 824 276 174 0 0 chr5 31365019 31365065 -121172194 - URR1B DNA MER1_type 0 225 180 7 824 666 229 13 67 chr5 31365068 31365218 -121172041 + B1_Mur3 SINE Alu 1 142 -7 7 824 282 29 0 0 chr5 31365226 31365261 -121171998 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 824 297 0 0 0 chr5 31365261 31365293 -121171966 + (GA)n Simple_repeat Simple_repeat 1 33 0 7 824 1042 88 0 64 chr5 31365718 31365875 -121171384 - B1_Mus1 SINE Alu 0 148 2 7 824 280 312 88 35 chr5 31365921 31366034 -121171225 - RSINE1 SINE B4 -1 164 46 7 824 255 314 0 44 chr5 31366205 31366295 -121170964 + B1_Mur4 SINE Alu 65 150 0 7 824 217 227 152 0 chr5 31366751 31366817 -121170442 - B1_Mur4 SINE Alu 0 150 75 7 824 694 230 0 15 chr5 31366914 31367051 -121170208 - B1F2 SINE Alu -13 136 2 7 824 416 294 78 103 chr5 31367415 31367482 -121169777 - B4 SINE B4 -5 287 222 7 824 594 0 0 0 chr5 31367482 31367548 -121169711 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 7 824 363 23 0 0 chr5 31367550 31367594 -121169665 + (TTG)n Simple_repeat Simple_repeat 2 45 0 7 824 1221 62 0 0 chr5 31367594 31367740 -121169519 - B1_Mm SINE Alu -1 146 1 7 824 416 294 78 103 chr5 31367740 31367866 -121169393 - B4 SINE B4 -71 221 90 7 824 1470 52 5 45 chr5 31367866 31368066 -121169193 - B2_Mm1a SINE B2 -1 192 1 7 824 416 294 78 103 chr5 31368066 31368110 -121169149 - B4 SINE B4 -203 89 55 7 824 249 33 0 0 chr5 31368143 31368173 -121169086 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 7 824 621 146 71 18 chr5 31368173 31368285 -121168974 - B1_Mur2 SINE Alu -10 139 22 7 824 736 139 23 30 chr5 31368340 31368473 -121168786 + B1_Mus1 SINE Alu 6 137 -11 7 824 242 29 0 28 chr5 31368741 31368777 -121168482 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 824 880 180 0 14 chr5 31368778 31368919 -121168340 - B1_Mur3 SINE Alu -10 139 1 7 824 945 119 12 19 chr5 31370269 31370431 -121166828 - B2_Mm2 SINE B2 -34 161 1 7 824 224 203 150 17 chr5 31372187 31372247 -121165012 - ID4 SINE ID -2 81 14 8 824 2649 99 10 27 chr5 31373382 31373676 -121163583 - MTB_Mm LTR MaLR 0 407 117 8 824 3089 62 31 8 chr5 31373676 31374067 -121163192 + MTB LTR MaLR 1 400 0 8 824 2649 99 10 27 chr5 31374067 31374186 -121163073 - MTB_Mm LTR MaLR -291 116 1 8 824 1210 68 0 0 chr5 31381857 31382004 -121155255 + B1_Mm SINE Alu 1 147 0 8 824 288 0 0 0 chr5 31382004 31382036 -121155223 + (A)n Simple_repeat Simple_repeat 1 32 0 8 824 536 158 10 1 chr5 31383498 31383595 -121153664 + B1_Mus2 SINE Alu 44 141 -6 8 824 263 239 15 0 chr5 31383627 31383694 -121153565 + 4.5SRNA scRNA scRNA 6 73 -21 8 824 441 191 170 18 chr5 31383738 31383850 -121153409 + B1_Mur1 SINE Alu 18 146 -3 8 824 373 184 103 0 chr5 31383933 31384020 -121153239 + B3 SINE B2 113 208 -8 8 824 391 243 106 10 chr5 31384043 31384147 -121153112 - PB1D9 SINE Alu -5 115 2 8 824 317 239 86 11 chr5 31384194 31384287 -121152972 + B3A SINE B2 5 104 -94 8 824 602 232 111 22 chr5 31384309 31384490 -121152769 + B3A SINE B2 1 197 -1 8 824 330 260 39 0 chr5 31384622 31384699 -121152560 + B4 SINE B4 1 80 -212 8 824 730 216 72 0 chr5 31384711 31384850 -121152409 - B1_Mur2 SINE Alu 0 149 1 8 824 327 121 0 0 chr5 31385018 31385076 -121152183 + (TC)n Simple_repeat Simple_repeat 1 58 0 8 824 365 162 250 0 chr5 31385084 31385164 -121152095 - B2_Mm2 SINE B2 -94 101 2 8 824 183 100 0 0 chr5 31386762 31386792 -121150467 + (G)n Simple_repeat Simple_repeat 1 30 0 8 824 228 262 16 0 chr5 31387174 31387235 -121150024 + B1_Mus1 SINE Alu 1 62 -86 8 824 527 43 0 14 chr5 31387268 31387339 -121149920 + (GA)n Simple_repeat Simple_repeat 2 71 0 8 824 887 191 13 105 chr5 31387344 31387446 -121149813 + ID_B1 SINE B4 6 222 -2 8 824 1061 29 7 0 chr5 31387446 31387583 -121149676 + B1_Mus1 SINE Alu 10 147 -1 8 824 393 238 0 0 chr5 31387585 31387665 -121149594 + ID_B1 SINE B4 143 222 -2 8 824 1036 64 70 6 chr5 31387671 31387828 -121149431 + B2_Mm2 SINE B2 1 167 -28 8 824 486 0 0 0 chr5 31387832 31387886 -121149373 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 824 700 133 75 0 chr5 31387886 31388006 -121149253 + B1_Mus2 SINE Alu 13 141 -6 8 824 343 256 116 65 chr5 31387887 31388025 -121149234 + B4A SINE B4 99 243 -49 8 824 633 110 0 0 chr5 31390017 31390126 -121147133 + (GA)n Simple_repeat Simple_repeat 2 110 0 8 824 229 214 148 12 chr5 31390145 31390246 -121147013 + PB1D10 SINE Alu 4 118 -2 8 824 207 297 83 48 chr5 31392760 31392905 -121144354 - MIR3 SINE MIR -4 204 55 8 824 21 71 0 0 chr5 31394995 31395037 -121142222 + GC_rich Low_complexity Low_complexity 1 42 0 8 824 555 56 0 0 chr5 31396412 31396483 -121140776 + (TG)n Simple_repeat Simple_repeat 2 72 0 8 824 188 250 0 0 chr5 31396532 31396572 -121140687 - MIRc SINE MIR -113 155 116 8 824 225 281 259 0 chr5 31399046 31399181 -121138078 + L2 LINE L2 2148 2317 -1102 8 824 2382 51 13 0 chr5 31399396 31399711 -121137548 + ORR1A2 LTR MaLR 1 319 -8 8 824 186 287 16 50 chr5 31399713 31399834 -121137425 + L2 LINE L2 2453 2569 -850 8 824 303 172 448 0 chr5 31400033 31400120 -121137139 - B1_Mur4 SINE Alu -24 126 1 8 824 216 0 0 0 chr5 31400143 31400167 -121137092 + (TC)n Simple_repeat Simple_repeat 2 25 0 8 824 1099 49 14 7 chr5 31400201 31400346 -121136913 - B1_Mm SINE Alu 0 147 2 8 824 292 263 13 38 chr5 31400580 31400659 -121136600 - ID4 SINE ID -5 78 2 8 824 490 221 0 9 chr5 31400717 31400822 -121136437 + PB1D10 SINE Alu 3 106 -11 8 824 411 293 37 25 chr5 31400840 31401001 -121136258 + RSINE1 SINE B4 1 163 -2 8 824 310 228 19 132 chr5 31401066 31401082 -121136177 + MT2B LTR ERVL 151 154 -447 8 824 576 209 0 9 chr5 31401082 31401198 -121136061 + PB1D9 SINE Alu 1 115 -5 8 824 435 226 17 78 chr5 31401201 31401249 -121136010 + B3A SINE B2 1 49 -149 8 824 2607 78 60 0 chr5 31401249 31401646 -121135613 + BGLII LTR ERVK 1 421 0 8 824 435 226 17 78 chr5 31401646 31401712 -121135547 + B3A SINE B2 50 108 -90 8 824 34 0 0 0 chr5 31401738 31401772 -121135487 + AT_rich Low_complexity Low_complexity 1 34 0 8 824 478 287 39 26 chr5 31401827 31401981 -121135278 - RSINE1 SINE B4 0 165 10 8 824 608 151 25 25 chr5 31402094 31402216 -121135043 + B3A SINE B2 1 122 -76 8 824 744 129 0 0 chr5 31402256 31402380 -121134879 + (CA)n Simple_repeat Simple_repeat 2 125 0 8 824 674 231 140 0 chr5 31402415 31402601 -121134658 + B3 SINE B2 2 213 -3 8 824 754 150 43 0 chr5 31402945 31403085 -121134174 + B1_Mur3 SINE Alu 2 147 -2 8 824 1423 44 39 0 chr5 31403119 31403300 -121133959 + B2_Mm2 SINE B2 2 189 -6 8 824 22 0 0 0 chr5 31403300 31403322 -121133937 + AT_rich Low_complexity Low_complexity 1 22 0 8 824 669 241 0 20 chr5 31403490 31403638 -121133621 + ID_B1 SINE B4 78 222 -2 8 824 818 204 6 12 chr5 31403663 31403827 -121133432 + RSINE1 SINE B4 3 165 0 8 824 1097 68 0 20 chr5 31403906 31404056 -121133203 + B1_Mm SINE Alu 1 147 0 8 824 204 40 0 0 chr5 31404056 31404081 -121133178 + (A)n Simple_repeat Simple_repeat 1 25 0 8 824 356 138 0 15 chr5 31404404 31404470 -121132789 + C-rich Low_complexity Low_complexity 3 67 0 8 824 714 239 13 6 chr5 31404471 31404627 -121132632 - B3A SINE B2 -41 157 1 8 824 324 175 0 0 chr5 31404653 31404710 -121132549 + MT2A LTR ERVL 1 57 -476 8 824 816 168 40 66 chr5 31404799 31404997 -121132262 - B2_Mm2 SINE B2 0 195 3 8 824 990 195 216 31 chr5 31405003 31405320 -121131939 + MT2A LTR ERVL 81 429 -104 8 824 1705 162 116 20 chr5 31405320 31405666 -121131593 - RLTR30 LTR ERV1 0 379 1 8 824 990 191 236 31 chr5 31405666 31405713 -121131546 + MT2A LTR ERVL 430 474 -59 8 824 207 215 45 27 chr5 31405732 31405842 -121131417 + (TA)n Simple_repeat Simple_repeat 2 113 0 8 824 1222 157 37 5 chr5 31405881 31406099 -121131160 - URR1B DNA MER1_type 0 225 1 8 824 1150 55 7 0 chr5 31406234 31406380 -121130879 - B1_Mm SINE Alu 0 147 1 8 824 182 100 0 24 chr5 31406380 31406415 -121130844 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 8 824 458 83 0 14 chr5 31406557 31406630 -121130629 + (TA)n Simple_repeat Simple_repeat 1 72 0 8 824 181 354 12 35 chr5 31407377 31407462 -121129797 - MIRm SINE MIR 0 276 194 8 824 344 239 144 7 chr5 31407677 31407816 -121129443 - L2a LINE L2 -6 3420 3263 8 824 246 32 0 0 chr5 31407820 31407851 -121129408 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 8 824 587 147 207 0 chr5 31407909 31408025 -121129234 + B1_Mus2 SINE Alu 1 140 -7 8 824 1111 81 0 0 chr5 31408800 31408948 -121128311 + B1_Mus1 SINE Alu 1 148 0 8 824 315 71 0 0 chr5 31408948 31408990 -121128269 + (A)n Simple_repeat Simple_repeat 1 42 0 8 824 261 319 24 89 chr5 31409030 31409154 -121128105 + RSINE1 SINE B4 2 117 -48 8 824 738 193 27 7 chr5 31409195 31409341 -121127918 - B1_Mur2 SINE Alu 0 149 1 8 824 703 246 52 6 chr5 31409341 31409513 -121127746 + B3 SINE B2 31 210 -6 8 824 1121 68 0 0 chr5 31409537 31409683 -121127576 + B1_Mus2 SINE Alu 2 147 0 8 824 503 114 0 22 chr5 31409684 31409774 -121127485 + (GAAAA)n Simple_repeat Simple_repeat 2 89 0 8 824 577 246 48 0 chr5 31409808 31409934 -121127325 + RSINE1 SINE B4 1 132 -33 8 824 305 47 23 0 chr5 31409947 31409990 -121127269 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 824 1361 89 0 5 chr5 31411441 31411632 -121125627 - B2_Mm2 SINE B2 -5 190 1 8 824 844 218 70 20 chr5 31412115 31412316 -121124943 + B3 SINE B2 1 211 -5 8 824 212 294 31 52 chr5 31412320 31412417 -121124842 + B1_Mus1 SINE Alu 3 97 -51 8 824 233 200 49 16 chr5 31412988 31413049 -121124210 + ID4 SINE ID 9 71 -12 8 824 1163 21 14 0 chr5 31413136 31413277 -121123982 - B1_Mus2 SINE Alu 0 147 5 8 824 799 189 30 30 chr5 31413591 31413755 -121123504 + RSINE1 SINE B4 2 165 0 8 824 265 208 51 13 chr5 31413756 31413834 -121123425 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 8 824 404 310 89 21 chr5 31415163 31415354 -121121905 - B3 SINE B2 -2 214 11 8 824 681 229 126 0 chr5 31415536 31415711 -121121548 + ID_B1 SINE B4 2 198 -26 8 824 3302 33 2 0 chr5 31415723 31416118 -121121141 + MTA_Mm LTR MaLR 1 396 0 8 824 9179 20 2 1 chr5 31416118 31417215 -121120044 + MTA_Mm-int LTR MaLR 1 1098 0 8 824 3302 33 2 0 chr5 31417215 31417610 -121119649 + MTA_Mm LTR MaLR 1 396 0 8 824 1405 169 51 44 chr5 31417705 31417978 -121119281 + RLTR41 LTR ERV1 172 446 0 8 824 462 294 0 48 chr5 31418019 31418144 -121119115 + RSINE1 SINE B4 9 127 -38 8 824 910 63 0 31 chr5 31418250 31418380 -121118879 + B1_Mus1 SINE Alu 2 127 -21 8 824 1065 116 0 0 chr5 31418402 31418566 -121118693 + (GAA)n Simple_repeat Simple_repeat 2 165 0 8 824 344 82 0 0 chr5 31419793 31419842 -121117417 + RSINE1 SINE B4 80 128 -37 8 824 180 125 0 0 chr5 31419852 31419884 -121117375 + (CAGA)n Simple_repeat Simple_repeat 4 35 0 8 824 252 171 0 0 chr5 31420405 31420446 -121116813 + B1F SINE Alu 26 66 -83 8 824 653 175 20 93 chr5 31420453 31420547 -121116712 - B1_Mur2 SINE Alu 0 149 67 8 824 1337 103 5 0 chr5 31420547 31420741 -121116518 - B2_Mm2 SINE B2 0 195 1 8 824 653 175 20 93 chr5 31420741 31420797 -121116462 - B1_Mur2 SINE Alu -83 66 10 8 824 284 300 50 0 chr5 31420809 31420889 -121116370 + B1F SINE Alu 59 142 -7 8 824 21 36 0 0 chr5 31420890 31420918 -121116341 + AT_rich Low_complexity Low_complexity 1 28 0 8 824 735 119 0 0 chr5 31421106 31421215 -121116044 - B2_Mm2 SINE B2 -46 149 41 8 824 335 78 20 0 chr5 31421215 31421266 -121115993 + (CAGA)n Simple_repeat Simple_repeat 1 52 0 9 824 225 159 0 0 chr5 31421457 31421501 -121115758 + (CTAA)n Simple_repeat Simple_repeat 1 44 0 9 824 379 248 154 8 chr5 31421715 31421845 -121115414 + B1F1 SINE Alu 1 149 0 9 824 730 239 141 0 chr5 31421859 31422043 -121115216 + B3 SINE B2 1 210 -6 9 824 193 40 57 57 chr5 31422115 31422168 -121115091 + CT-rich Low_complexity Low_complexity 4 56 0 9 824 306 236 28 0 chr5 31422177 31422249 -121115010 - ID4_ SINE ID -9 74 1 9 824 691 194 18 53 chr5 31422270 31422439 -121114820 - B3A SINE B2 0 198 36 9 824 267 232 35 124 chr5 31422809 31422922 -121114337 + MT2B2 LTR ERVL 152 254 -330 9 824 517 242 0 0 chr5 31422823 31422922 -121114337 + B1F1 SINE Alu 3 101 -48 9 824 426 244 0 87 chr5 31422922 31422949 -121114310 + ID_B1 SINE B4 84 198 -26 9 824 319 271 61 76 chr5 31423070 31423113 -121114146 + FAM SINE Alu 173 215 -96 9 824 369 0 0 0 chr5 31423113 31423154 -121114105 + (TTG)n Simple_repeat Simple_repeat 2 42 0 9 824 319 271 61 76 chr5 31423154 31423183 -121114076 + FAM SINE Alu 216 239 -72 9 824 973 31 132 0 chr5 31423183 31423312 -121113947 - B1_Mm SINE Alu -1 146 1 9 824 319 271 61 76 chr5 31423312 31423370 -121113889 + FAM SINE Alu 240 302 -9 9 824 480 230 26 0 chr5 31423382 31423442 -121113817 + ID SINE ID 20 82 -142 9 824 238 173 400 0 chr5 31423442 31423517 -121113742 + PB1D7 SINE Alu 1 105 -15 9 824 287 206 0 27 chr5 31424092 31424167 -121113092 + CT-rich Low_complexity Low_complexity 3 75 0 9 824 771 90 54 0 chr5 31424175 31424286 -121112973 - B1_Mus1 SINE Alu -8 140 24 9 824 289 213 0 96 chr5 31424216 31424299 -121112960 - RLTR25A LTR ERVK -531 572 498 9 824 377 174 215 11 chr5 31424562 31424655 -121112604 - PB1D7 SINE Alu -8 112 1 9 824 1128 48 14 0 chr5 31424671 31424816 -121112443 - B1_Mus1 SINE Alu 0 148 2 9 824 220 186 47 0 chr5 31424952 31424995 -121112264 + ID SINE ID 4 48 -176 9 824 580 266 144 0 chr5 31425004 31425177 -121112082 + ID_B1 SINE B4 14 211 -13 9 824 631 274 20 69 chr5 31425781 31425985 -121111274 + ID_B1 SINE B4 16 209 -15 9 824 265 100 0 39 chr5 31426006 31426058 -121111201 + (GGGAGA)n Simple_repeat Simple_repeat 4 53 0 9 824 939 66 80 7 chr5 31426273 31426411 -121110848 - B1_Mus1 SINE Alu 0 148 1 9 824 260 276 57 9 chr5 31426907 31427013 -121110246 - PB1D10 SINE Alu -1 116 6 9 824 598 227 38 25 chr5 31426940 31427098 -121110161 - ID_B1 SINE B4 -63 161 2 9 824 2903 42 8 5 chr5 31427578 31427961 -121109298 - L1Md_F2 LINE L1 0 6582 6199 9 824 537 157 142 47 chr5 31428274 31428401 -121108858 - B1_Mur2 SINE Alu -2 147 9 9 824 641 213 65 16 chr5 31428744 31428901 -121108358 + ID_B1 SINE B4 67 229 -63 9 824 462 240 28 4 chr5 31429048 31429163 -121108096 - B4 SINE B4 -167 125 2 9 824 243 183 49 16 chr5 31429168 31429229 -121108030 - PB1D10 SINE Alu -8 109 47 9 824 279 71 0 0 chr5 31429508 31429550 -121107709 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 9 824 1061 82 7 20 chr5 31429555 31429704 -121107555 - B1_Mus1 SINE Alu 0 148 2 9 824 589 196 64 14 chr5 31429827 31429967 -121107292 - RMER5 LTR ERV1 -9 525 379 9 824 1199 34 0 0 chr5 31429995 31430142 -121107117 - B1_Mm SINE Alu 0 147 1 9 824 288 0 0 0 chr5 31430191 31430223 -121107036 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 824 338 247 25 0 chr5 31430228 31430309 -121106950 - RSINE1 SINE B4 -37 128 46 9 824 261 229 43 0 chr5 31430325 31430395 -121106864 - RMER5 LTR ERV1 -133 401 329 9 824 877 156 0 7 chr5 31430395 31430537 -121106722 + B1_Mur2 SINE Alu 1 141 -8 9 824 718 283 47 72 chr5 31430556 31430876 -121106383 - RMER5 LTR ERV1 -190 344 33 9 824 1301 142 27 0 chr5 31431352 31431571 -121105688 - URR1B DNA MER1_type 0 225 1 9 824 293 347 111 39 chr5 31431769 31432048 -121105211 - MLT1J LTR MaLR -172 340 42 9 824 180 0 0 0 chr5 31432092 31432112 -121105147 + (TTA)n Simple_repeat Simple_repeat 2 21 0 9 824 392 271 83 23 chr5 31432126 31432258 -121105001 - RSINE1 SINE B4 -24 141 2 9 824 445 182 279 50 chr5 31432555 31432734 -121104525 - ID_B1 SINE B4 -2 222 3 9 824 326 212 50 11 chr5 31432800 31432889 -121104370 + PB1D9 SINE Alu 17 116 -11 9 824 541 40 26 0 chr5 31432889 31432965 -121104294 + (GA)n Simple_repeat Simple_repeat 2 79 0 9 824 341 268 24 12 chr5 31432965 31433048 -121104211 + ID_B1 SINE B4 104 187 -37 9 824 1903 138 30 27 chr5 31433688 31434023 -121103236 - MTC LTR MaLR -69 352 17 9 824 182 311 55 36 chr5 31434582 31434692 -121102567 + MIRc SINE MIR 28 139 -129 9 824 384 310 155 63 chr5 31435117 31435344 -121101915 + L1MEd LINE L1 592 858 -5261 9 824 375 219 188 39 chr5 31435344 31435472 -121101787 + B1F SINE Alu 2 148 -1 9 824 1368 59 37 0 chr5 31435474 31435661 -121101598 + B2_Mm2 SINE B2 1 194 -1 9 824 384 310 155 63 chr5 31435661 31435733 -121101526 + L1MEd LINE L1 859 922 -5197 9 824 332 287 9 9 chr5 31435820 31435936 -121101323 + PB1D10 SINE Alu 2 117 0 9 824 326 359 115 21 chr5 31435965 31436244 -121101015 + L1MEd LINE L1 945 1249 -4976 9 824 921 108 140 0 chr5 31436749 31436906 -121100353 + B2_Mm1t SINE B2 3 181 -12 9 824 288 164 163 42 chr5 31436933 31437037 -121100222 + B2_Mm2 SINE B2 50 186 -7 9 824 303 248 137 10 chr5 31437142 31437244 -121100015 + PB1D10 SINE Alu 1 115 -2 9 824 442 277 50 50 chr5 31437246 31437444 -121099815 + B3A SINE B2 1 198 0 9 824 318 50 0 0 chr5 31437558 31437598 -121099661 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 824 24 91 0 0 chr5 31437611 31437677 -121099582 + AT_rich Low_complexity Low_complexity 1 66 0 9 824 539 299 66 61 chr5 31437730 31437926 -121099333 - B3A SINE B2 0 198 2 9 824 568 121 22 0 chr5 31437998 31438089 -121099170 - B1_Mur4 SINE Alu -1 149 57 9 824 200 280 210 0 chr5 31438276 31438376 -121098883 + MIR3 SINE MIR 66 186 -22 9 824 663 173 0 0 chr5 31438773 31438946 -121098313 + CT-rich Low_complexity Low_complexity 1 173 0 9 824 213 146 0 0 chr5 31438948 31438996 -121098263 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 824 650 169 71 29 chr5 31441940 31442070 -121095189 + B1_Mus2 SINE Alu 1 137 -10 9 824 525 16 0 0 chr5 31442070 31442132 -121095127 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 824 187 317 122 0 chr5 31442141 31442223 -121095036 + MIR SINE MIR 22 113 -95 9 824 273 258 30 0 chr5 31442427 31442493 -121094766 + ID SINE ID 5 72 -152 9 824 1369 57 17 0 chr5 31443045 31443222 -121094037 - B2_Mm2 SINE B2 -14 181 2 9 824 1121 115 10 40 chr5 31443307 31443330 -121093929 - B2_Mm2 SINE B2 -1 194 170 9 824 1056 95 0 26 chr5 31443330 31443481 -121093778 - B1_Mus2 SINE Alu 0 147 1 9 824 1121 115 10 40 chr5 31443481 31443499 -121093760 - B2_Mm2 SINE B2 -26 169 158 9 824 248 0 31 0 chr5 31443499 31443531 -121093728 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 9 824 1121 115 10 40 chr5 31443531 31443688 -121093571 - B2_Mm2 SINE B2 -38 157 1 9 824 858 212 18 186 chr5 31443841 31444067 -121093192 - B3A SINE B2 -6 189 2 9 824 626 275 67 0 chr5 31444446 31444595 -121092664 - RSINE1 SINE B4 -4 161 3 9 824 1644 31 0 20 chr5 31444687 31444883 -121092376 - B2_Mm1t SINE B2 0 193 2 9 824 792 0 0 0 chr5 31444931 31445019 -121092240 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 9 824 239 405 48 65 chr5 31445042 31445166 -121092093 - ID_B1 SINE B4 -49 175 54 9 824 562 318 26 13 chr5 31445141 31445294 -121091965 + B3A SINE B2 40 194 -4 9 824 462 241 0 69 chr5 31445303 31445419 -121091840 - B1_Mus1 SINE Alu -1 147 40 9 824 546 16 0 0 chr5 31445426 31445489 -121091770 + (TA)n Simple_repeat Simple_repeat 2 64 0 9 824 639 13 0 0 chr5 31445498 31445575 -121091684 - B1_Mm SINE Alu 0 147 71 9 824 24 103 0 0 chr5 31445594 31445681 -121091578 + AT_rich Low_complexity Low_complexity 1 87 0 9 824 904 219 64 0 chr5 31445685 31445872 -121091387 + B3 SINE B2 3 201 -15 9 824 631 237 15 0 chr5 31445947 31446078 -121091181 - B1_Mur2 SINE Alu 0 149 17 9 824 1127 49 0 0 chr5 31446271 31446413 -121090846 - B1_Mus2 SINE Alu 0 147 6 9 824 462 225 93 80 chr5 31446306 31446456 -121090803 - MT2B LTR ERVL -337 264 113 9 824 743 225 106 11 chr5 31446457 31446646 -121090613 - B3 SINE B2 -5 211 5 9 824 614 193 59 0 chr5 31448640 31448759 -121088500 + B1F1 SINE Alu 5 130 -19 9 824 185 296 73 12 chr5 31448863 31448945 -121088314 - MIR3 SINE MIR -7 201 115 9 824 1158 75 0 14 chr5 31450257 31450405 -121086854 + B1_Mus1 SINE Alu 3 148 0 9 824 548 271 28 21 chr5 31450675 31450818 -121086441 + B1F2 SINE Alu 4 147 -2 9 824 884 226 60 11 chr5 31450848 31451031 -121086228 + B3 SINE B2 15 206 -10 9 824 1213 48 7 0 chr5 31451120 31451265 -121085994 + B1_Mus2 SINE Alu 2 147 0 9 824 365 222 28 0 chr5 31451268 31451340 -121085919 + L1MEc LINE L1 2214 2287 -4113 9 824 308 154 0 30 chr5 31451759 31451826 -121085433 + G-rich Low_complexity Low_complexity 5 69 0 9 824 1594 52 0 0 chr5 31452679 31452872 -121084387 + B2_Mm1a SINE B2 1 193 0 9 824 1153 68 0 20 chr5 31452895 31453046 -121084213 + B1_Mus1 SINE Alu 1 148 0 9 824 243 88 0 0 chr5 31453046 31453080 -121084179 + (A)n Simple_repeat Simple_repeat 1 34 0 9 824 452 160 68 105 chr5 31453284 31453417 -121083842 + MT2B LTR ERVL 137 264 -337 9 824 1068 23 0 0 chr5 31453310 31453439 -121083820 + B1_Mus1 SINE Alu 7 135 -13 9 824 288 0 0 0 chr5 31453439 31453471 -121083788 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 824 354 298 29 26 chr5 31453731 31453883 -121083376 - MIRc SINE MIR -38 170 21 1 824 513 236 62 35 chr5 31454986 31455131 -121082128 + B1F1 SINE Alu 1 149 0 1 824 754 197 35 0 chr5 31455457 31455599 -121081660 + B1_Mus1 SINE Alu 2 148 0 1 824 501 268 119 23 chr5 31455671 31455847 -121081412 - B3A SINE B2 0 198 6 1 12 1136 83 0 0 chr5 31457245 31457390 -121079869 - B1_Mus2 SINE Alu -2 145 1 1 825 262 260 0 76 chr5 31457947 31458026 -121079233 - tRNA-Ala-GCG tRNA tRNA -1 74 2 1 825 382 332 160 5 chr5 31458933 31459145 -121078114 + L3 LINE CR1 4052 4296 -193 1 825 457 284 73 0 chr5 31459169 31459278 -121077981 - PB1D10 SINE Alu 0 117 1 1 825 516 205 106 9 chr5 31460207 31460320 -121076939 + B1_Mur4 SINE Alu 19 142 -8 1 825 22 0 0 0 chr5 31460897 31460919 -121076340 + AT_rich Low_complexity Low_complexity 1 22 0 1 825 695 284 7 7 chr5 31460920 31461069 -121076190 - RSINE1 SINE B4 -6 159 11 1 825 261 276 0 44 chr5 31462520 31462611 -121074648 - CYRA11_Mm Unknown Y-chromosome -295 322 236 1 825 695 162 51 14 chr5 31462531 31462669 -121074590 + URR1B DNA MER1_type 83 225 0 1 825 613 302 5 44 chr5 31462904 31463108 -121074151 - B3A SINE B2 0 198 3 1 825 267 277 192 29 chr5 31463145 31463249 -121074010 + B1F2 SINE Alu 7 127 0 1 825 411 264 64 0 chr5 31463404 31463514 -121073745 - PB1D7 SINE Alu -3 117 1 1 825 280 340 99 13 chr5 31463524 31463676 -121073583 + MER58A DNA MER1_type 38 202 -22 1 825 1247 41 0 0 chr5 31463839 31463986 -121073273 + B1_Mus1 SINE Alu 1 147 -1 1 825 367 250 93 65 chr5 31463987 31464094 -121073165 + RSINE1 SINE B4 28 137 -28 1 825 24 67 0 0 chr5 31464099 31464144 -121073115 + AT_rich Low_complexity Low_complexity 1 45 0 1 825 511 164 196 18 chr5 31464298 31464410 -121072849 - B3 SINE B2 -84 132 1 1 825 1614 118 283 0 chr5 31464848 31465152 -121072107 - ORR1B1 LTR MaLR 0 394 5 1 825 8361 157 50 109 chr5 31465153 31467240 -121070019 - ORR1B1-int LTR MaLR 0 1963 1 1 825 941 146 466 4 chr5 31467240 31467509 -121069750 - ORR1B1 LTR MaLR 0 394 1 1 825 516 277 34 62 chr5 31467526 31467672 -121069587 - RSINE1 SINE B4 -12 153 12 1 825 1152 54 0 13 chr5 31467711 31467860 -121069399 + B1_Mus2 SINE Alu 1 147 0 1 825 207 194 0 0 chr5 31467885 31467921 -121069338 + (TATG)n Simple_repeat Simple_repeat 3 38 0 1 825 248 267 53 0 chr5 31467968 31468043 -121069216 - ID_B1 SINE B4 -4 220 142 1 825 540 240 56 40 chr5 31468074 31468200 -121069059 - ID_B1 SINE B4 -67 157 30 1 825 743 145 27 55 chr5 31468461 31468607 -121068652 - B1_Mur4 SINE Alu 0 150 9 1 825 272 259 68 34 chr5 31469133 31469221 -121068038 + PB1D10 SINE Alu 27 117 0 1 825 312 214 133 67 chr5 31469294 31469384 -121067875 - PB1D9 SINE Alu -1 119 24 1 825 558 289 106 0 chr5 31469404 31469584 -121067675 - RMER30 DNA MER1_type -2 200 2 1 825 992 60 45 0 chr5 31470981 31471114 -121066145 - B1_Mus2 SINE Alu 0 147 9 1 825 365 261 11 33 chr5 31471601 31471692 -121065567 + MTE2b LTR MaLR 9 97 -282 1 825 1188 55 7 0 chr5 31471730 31471876 -121065383 - B1_Mus2 SINE Alu 0 147 1 1 825 987 256 57 81 chr5 31471876 31472174 -121065085 + MTE2b LTR MaLR 75 365 -14 1 825 1299 47 93 6 chr5 31473061 31473211 -121064048 + B2_Mm2 SINE B2 3 155 -40 1 825 380 55 13 40 chr5 31473211 31473286 -121063973 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 825 1299 47 93 6 chr5 31473286 31473307 -121063952 + B2_Mm2 SINE B2 156 189 -6 1 825 323 252 152 19 chr5 31473450 31473555 -121063704 + PB1D9 SINE Alu 2 120 0 1 825 1576 42 16 0 chr5 31473559 31473749 -121063510 + B2_Mm1a SINE B2 1 193 0 1 825 1342 89 11 0 chr5 31473753 31473932 -121063327 + B2_Mm1t SINE B2 2 182 -11 1 825 260 90 0 4 chr5 31473969 31474016 -121063243 + B2_Mm2 SINE B2 64 109 -107 1 825 23 0 0 0 chr5 31474028 31474051 -121063208 + AT_rich Low_complexity Low_complexity 1 23 0 1 825 215 125 25 0 chr5 31474052 31474092 -121063167 + (GAAAA)n Simple_repeat Simple_repeat 4 44 0 1 825 1632 42 0 0 chr5 31474155 31474347 -121062912 + B2_Mm1a SINE B2 2 193 0 1 825 249 279 0 47 chr5 31474353 31474417 -121062842 + B4A SINE B4 217 277 -15 1 825 385 286 59 9 chr5 31474510 31474622 -121062637 + PB1D7 SINE Alu 1 115 -34 1 825 222 376 58 33 chr5 31475497 31475618 -121061641 - MIRb SINE MIR -57 211 88 1 825 731 145 0 25 chr5 31475786 31475906 -121061353 + PB1D10 SINE Alu 1 117 0 1 825 469 243 113 35 chr5 31476999 31477114 -121060145 + RSINE1 SINE B4 8 131 -34 1 825 248 0 31 0 chr5 31477218 31477250 -121060009 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1 825 526 177 34 42 chr5 31477254 31477372 -121059887 + PB1D10 SINE Alu 1 117 0 1 825 1047 82 0 0 chr5 31477384 31477518 -121059741 + B1_Mus2 SINE Alu 1 134 -13 1 825 278 50 0 24 chr5 31477518 31477559 -121059700 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 825 367 240 125 0 chr5 31477901 31478005 -121059254 + PB1D10 SINE Alu 1 117 0 1 825 1153 29 0 0 chr5 31478146 31478285 -121058974 + B1_Mm SINE Alu 9 147 0 1 825 210 105 0 0 chr5 31478285 31478323 -121058936 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 825 248 239 137 32 chr5 31479167 31479262 -121057997 - PB1D9 SINE Alu -3 117 13 1 825 220 278 19 0 chr5 31479308 31479362 -121057897 + PB1D10 SINE Alu 56 110 -7 1 825 398 229 20 27 chr5 31479420 31479536 -121057723 + B1_Mur1 SINE Alu 30 149 0 1 825 248 259 45 34 chr5 31479560 31479648 -121057611 + PB1D10 SINE Alu 17 105 -12 1 825 765 232 59 32 chr5 31479740 31479927 -121057332 + B3 SINE B2 4 195 -21 1 825 272 351 11 12 chr5 31480235 31480324 -121056935 + ID4 SINE ID 2 90 -62 1 825 183 80 0 0 chr5 31480324 31480349 -121056910 + (GGGA)n Simple_repeat Simple_repeat 1 25 0 1 825 287 298 77 0 chr5 31480478 31480582 -121056677 + PB1D10 SINE Alu 1 112 -5 1 825 1090 70 7 0 chr5 31480668 31480810 -121056449 + B1_Mus1 SINE Alu 6 148 0 1 825 561 37 37 0 chr5 31480976 31481057 -121056202 + L1Md_F3 LINE L1 6501 6584 0 1 825 677 240 11 9 chr5 31483094 31483247 -121054012 + ID_B1 SINE B4 90 237 -55 1 825 289 250 45 56 chr5 31483243 31483332 -121053927 + PB1 SINE Alu 10 97 -30 1 825 21 0 0 0 chr5 31483573 31483594 -121053665 + AT_rich Low_complexity Low_complexity 1 21 0 1 825 1081 99 129 0 chr5 31483647 31483818 -121053441 - B2_Mm2 SINE B2 0 195 3 1 825 476 268 126 58 chr5 31484002 31484176 -121053083 - B3A SINE B2 -12 186 1 1 825 207 170 0 0 chr5 31484189 31484236 -121053023 + T-rich Low_complexity Low_complexity 1 47 0 1 825 995 144 0 0 chr5 31484236 31484382 -121052877 - B1_Mus1 SINE Alu 0 148 3 1 825 603 94 62 0 chr5 31484385 31484481 -121052778 + RMER6B LTR ERVK 1 102 -359 1 825 823 47 0 0 chr5 31484479 31484585 -121052674 - B1_Mm SINE Alu 0 147 42 1 825 644 158 186 48 chr5 31484573 31484813 -121052446 + RMER6B LTR ERVK 78 392 -69 1 825 243 0 0 0 chr5 31484849 31484876 -121052383 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 825 1211 56 0 0 chr5 31484876 31485019 -121052240 - B1_Mus2 SINE Alu -3 144 2 1 825 233 355 26 35 chr5 31485027 31485141 -121052118 - L1MC LINE L1 -2186 5696 5584 1 825 280 277 35 35 chr5 31485508 31485594 -121051665 - B1F1 SINE Alu -59 90 5 1 825 1145 69 14 0 chr5 31485900 31486045 -121051214 + B1_Mus2 SINE Alu 1 147 0 1 825 359 86 17 0 chr5 31486361 31486419 -121050840 + B1_Mm SINE Alu 89 147 0 1 825 225 0 0 0 chr5 31486422 31486447 -121050812 + (A)n Simple_repeat Simple_repeat 1 25 0 1 825 241 306 163 0 chr5 31486594 31486692 -121050567 + ID_B1 SINE B4 111 224 0 1 825 22 0 0 0 chr5 31486768 31486790 -121050469 + AT_rich Low_complexity Low_complexity 1 22 0 1 825 220 233 0 104 chr5 31487122 31487189 -121050070 + ID_B1 SINE B4 77 136 -88 1 825 1306 80 69 0 chr5 31487198 31487373 -121049886 - B2_Mm2 SINE B2 -8 187 1 1 825 351 208 273 23 chr5 31487393 31487565 -121049694 - B3 SINE B2 -1 215 1 1 825 490 258 113 0 chr5 31487566 31487690 -121049569 - ID_B1 SINE B4 -3 221 84 1 825 521 226 37 8 chr5 31487905 31488039 -121049220 - ID_B1 SINE B4 -3 221 84 1 825 812 77 43 0 chr5 31487923 31488040 -121049219 - B1_Mur4 SINE Alu -27 123 2 1 825 209 214 0 0 chr5 31488096 31488138 -121049121 + MIR SINE MIR 79 120 -142 1 825 1392 68 16 10 chr5 31488148 31488340 -121048919 - B2_Mm2 SINE B2 -1 194 2 1 825 965 31 154 23 chr5 31488407 31488537 -121048722 + B1_Mm SINE Alu 1 147 0 1 825 579 192 167 0 chr5 31488602 31488722 -121048537 + B1_Mus2 SINE Alu 6 145 -2 1 825 1107 49 40 27 chr5 31488727 31488875 -121048384 + B1_Mur4 SINE Alu 1 150 0 1 825 225 254 70 56 chr5 31488921 31488992 -121048267 - ID2 SINE ID -10 73 2 1 825 1093 65 65 0 chr5 31489123 31489261 -121047998 - B1_Mus1 SINE Alu -1 147 1 1 825 533 192 127 8 chr5 31489300 31489426 -121047833 - B1_Mur3 SINE Alu -8 141 1 1 825 922 198 91 0 chr5 31489427 31489614 -121047645 - B3 SINE B2 -12 204 1 1 825 595 148 114 22 chr5 31489622 31489759 -121047500 - B1_Mur2 SINE Alu -7 142 3 1 825 243 0 0 0 chr5 31490718 31490745 -121046514 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1 825 785 145 9 59 chr5 31490757 31490906 -121046353 - B2_Mm2 SINE B2 -42 156 3 1 825 629 93 73 27 chr5 31490908 31491018 -121046241 - B1_Mus1 SINE Alu 0 148 34 1 825 553 232 0 0 chr5 31491063 31491162 -121046097 + PB1D9 SINE Alu 5 103 -17 1 825 454 237 41 0 chr5 31491252 31491349 -121045910 + RSINE1 SINE B4 3 103 -62 1 825 558 131 9 108 chr5 31491362 31491473 -121045786 + B1_Mur3 SINE Alu 50 149 0 1 825 267 197 0 0 chr5 31491478 31491495 -121045764 + A-rich Low_complexity Low_complexity 1 17 0 1 825 1631 36 5 0 chr5 31491495 31491687 -121045572 + B2_Mm1t SINE B2 1 193 0 1 825 267 197 0 0 chr5 31491687 31491745 -121045514 + A-rich Low_complexity Low_complexity 18 75 0 1 825 242 261 0 0 chr5 31491745 31491791 -121045468 + RSINE1 SINE B4 85 130 -35 1 825 404 209 176 34 chr5 31492436 31492555 -121044704 + B1_Mus1 SINE Alu 2 137 -11 1 825 385 175 63 99 chr5 31494290 31494403 -121042856 - B1_Mur4 SINE Alu 0 120 2 1 825 233 305 114 23 chr5 31496745 31496876 -121040383 + MIR3 SINE MIR 64 206 -2 1 825 207 0 0 0 chr5 31497938 31497961 -121039298 + (T)n Simple_repeat Simple_repeat 1 23 0 1 825 1108 69 0 40 chr5 31499125 31499276 -121037983 - B1_Mus2 SINE Alu -2 145 1 1 825 186 43 0 0 chr5 31499756 31499779 -121037480 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1 825 334 198 154 29 chr5 31499779 31499877 -121037382 - B1F1 SINE Alu -12 137 26 1 825 1158 89 18 12 chr5 31506185 31506355 -121030904 - B2_Mm2 SINE B2 -9 186 16 1 825 235 258 0 0 chr5 31507403 31507469 -121029790 + CT-rich Low_complexity Low_complexity 2 67 0 2 825 437 245 106 53 chr5 31507849 31508000 -121029259 + RSINE1 SINE B4 5 163 -2 3 825 418 246 131 48 chr5 31508182 31508327 -121028932 + RSINE1 SINE B4 8 164 -1 4 825 190 200 0 0 chr5 31509155 31509195 -121028064 - L3 LINE CR1 -4390 99 60 5 825 381 117 0 0 chr5 31509242 31509302 -121027957 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 825 688 147 0 0 chr5 31509349 31509451 -121027808 - B1_Mus2 SINE Alu -6 141 40 7 825 1427 274 52 22 chr5 31509480 31509883 -121027376 - Lx5 LINE L1 -8 7042 6628 8 825 895 158 7 0 chr5 31511031 31511170 -121026089 - B1_Mur4 SINE Alu -2 148 9 9 825 386 258 0 130 chr5 31511063 31511201 -121026058 - MT2B LTR ERVL -337 264 145 1 825 384 255 133 0 chr5 31511214 31511312 -121025947 + RSINE1 SINE B4 13 123 -42 1 825 1002 96 0 58 chr5 31511389 31511544 -121025715 + B1_Mus2 SINE Alu 2 147 0 1 825 261 0 0 0 chr5 31511563 31511592 -121025667 + (A)n Simple_repeat Simple_repeat 1 29 0 1 825 678 211 7 40 chr5 31512420 31512568 -121024691 - B1_Mus2 SINE Alu -1 146 4 1 825 337 284 81 18 chr5 31512569 31512680 -121024579 - PB1D7 SINE Alu -1 119 2 1 825 228 200 0 0 chr5 31512746 31512796 -121024463 + T-rich Low_complexity Low_complexity 1 50 0 1 825 1050 57 50 0 chr5 31512800 31512940 -121024319 - B1_Mus2 SINE Alu 0 147 1 1 825 186 323 0 44 chr5 31513561 31513629 -121023630 - L4 LINE RTE -730 1299 1235 1 825 305 268 36 12 chr5 31513883 31513966 -121023293 + MLT1A1 LTR MaLR 320 404 -4 1 825 943 129 71 0 chr5 31514425 31514565 -121022694 + B1_Mur4 SINE Alu 1 150 0 2 825 292 235 0 68 chr5 31514597 31514670 -121022589 + ID_B1 SINE B4 156 223 -1 2 825 506 267 83 45 chr5 31514670 31514827 -121022432 + RSINE1 SINE B4 3 165 0 2 825 412 263 95 133 chr5 31514912 31515206 -121022053 + B4A SINE B4 3 285 -7 2 825 383 244 163 32 chr5 31515292 31515415 -121021844 + B1F2 SINE Alu 1 139 -10 2 825 209 159 0 43 chr5 31515428 31515474 -121021785 + GA-rich Low_complexity Low_complexity 3 46 0 2 825 225 0 0 0 chr5 31515476 31515501 -121021758 + (CAG)n Simple_repeat Simple_repeat 2 26 0 2 825 368 239 223 0 chr5 31515515 31515645 -121021614 + L1MB2 LINE L1 5949 6107 -64 2 825 350 313 101 0 chr5 31515653 31515752 -121021507 - PB1D10 SINE Alu -8 109 1 2 825 300 306 43 43 chr5 31515816 31515932 -121021327 + PB1D9 SINE Alu 1 116 -4 2 825 227 225 0 0 chr5 31515978 31516018 -121021241 + L1M4 LINE L1 3516 3555 -2591 3 825 270 224 11 23 chr5 31516042 31516129 -121021130 + MER2B DNA MER2_type 169 254 -82 3 825 1466 54 5 0 chr5 31516144 31516329 -121020930 - B2_Mm1t SINE B2 -6 187 2 3 825 759 87 171 23 chr5 31516366 31516495 -121020764 + B1_Mus1 SINE Alu 1 148 0 3 825 393 282 75 133 chr5 31516649 31516837 -121020422 + B4 SINE B4 47 223 -69 3 825 804 213 7 14 chr5 31516696 31516839 -121020420 + B1_Mur4 SINE Alu 9 150 0 3 825 344 304 104 62 chr5 31516871 31517064 -121020195 + L1M4 LINE L1 3728 3928 -2218 3 825 416 267 19 38 chr5 31517064 31517169 -121020090 + B3A SINE B2 2 104 -94 3 825 231 288 45 0 chr5 31517426 31517492 -121019767 - MER21B LTR ERV1 -297 566 498 3 825 909 293 157 12 chr5 31517536 31517881 -121019378 - MER21B LTR ERV1 -467 396 2 3 825 362 109 156 0 chr5 31517885 31517949 -121019310 + L1M4 LINE L1 5625 5698 -486 3 825 752 229 12 67 chr5 31518079 31518243 -121019016 + B3 SINE B2 1 155 -61 3 825 287 258 111 171 chr5 31518243 31518313 -121018946 + ID_B1 SINE B4 1 220 -4 4 825 754 182 100 86 chr5 31518381 31518591 -121018668 - B3 SINE B2 -2 214 2 4 825 460 269 0 0 chr5 31518651 31518755 -121018504 + PB1D9 SINE Alu 5 108 -12 4 825 552 281 42 21 chr5 31518794 31518936 -121018323 + RSINE1 SINE B4 21 165 0 4 825 909 138 37 42 chr5 31518986 31519156 -121018103 + B2_Mm2 SINE B2 8 177 -18 4 825 1196 48 7 0 chr5 31519156 31519301 -121017958 + B1_Mm SINE Alu 2 147 0 4 825 909 138 37 42 chr5 31519301 31519319 -121017940 + B2_Mm2 SINE B2 178 195 0 4 825 1042 53 0 0 chr5 31519332 31519464 -121017795 + B1_Mm SINE Alu 16 147 0 4 825 243 0 0 0 chr5 31519466 31519493 -121017766 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 825 1322 51 11 22 chr5 31519493 31519675 -121017584 + B2_Mm2 SINE B2 14 193 -2 4 825 580 51 26 0 chr5 31520927 31521005 -121016254 - B1_Mus2 SINE Alu 0 147 68 4 825 915 54 3 25 chr5 31520972 31521117 -121016142 - B1_Mus2 SINE Alu -18 131 1 5 825 407 199 89 122 chr5 31521117 31521249 -121016010 - ORR1B1-int LTR MaLR -862 647 524 5 825 214 327 77 0 chr5 31521404 31521508 -121015751 + MIR3 SINE MIR 97 208 0 5 825 252 0 0 0 chr5 31521640 31521668 -121015591 + (A)n Simple_repeat Simple_repeat 1 28 0 5 825 21 57 0 0 chr5 31522846 31522881 -121014378 + GC_rich Low_complexity Low_complexity 1 35 0 5 825 893 166 117 15 chr5 31524003 31524199 -121013060 + B3 SINE B2 1 216 0 5 825 328 280 29 48 chr5 31524212 31524317 -121012942 + PB1D7 SINE Alu 1 103 -17 5 825 1253 76 10 71 chr5 31524361 31524559 -121012700 - B2_Mm2 SINE B2 -8 187 2 5 825 183 246 0 104 chr5 31524767 31524844 -121012415 + L2c LINE L2 3319 3387 0 5 825 514 288 41 64 chr5 31525129 31525242 -121012017 + ID_B1 SINE B4 54 167 -57 5 825 3707 45 5 2 chr5 31525242 31525688 -121011571 - LTRIS5 LTR ERV1 0 447 1 6 825 514 288 41 64 chr5 31525688 31525745 -121011514 + ID_B1 SINE B4 168 220 -4 5 825 1607 115 22 37 chr5 31525889 31526160 -121011099 - Lx LINE L1 0 6654 6388 6 825 1229 40 14 0 chr5 31526181 31526329 -121010930 - B1_Mur4 SINE Alu 0 150 1 6 825 505 135 385 0 chr5 31526336 31526440 -121010819 - B1_Mur4 SINE Alu -6 144 1 6 825 211 169 99 84 chr5 31526509 31526580 -121010679 + B1_Mur1 SINE Alu 78 149 0 6 825 408 292 58 0 chr5 31526886 31527023 -121010236 - ID_B1 SINE B4 0 224 80 6 825 655 102 157 0 chr5 31527062 31527170 -121010089 - B2_Mm2 SINE B2 -70 125 1 6 825 261 114 0 0 chr5 31527203 31527238 -121010021 + U2 snRNA snRNA 1 35 -153 6 825 249 317 12 12 chr5 31527648 31527731 -121009528 + ID2 SINE ID 1 83 0 6 825 22 70 0 0 chr5 31527928 31527971 -121009288 + AT_rich Low_complexity Low_complexity 1 43 0 6 825 1183 62 0 7 chr5 31527971 31528118 -121009141 - B1_Mm SINE Alu 0 147 2 7 825 314 240 26 26 chr5 31528641 31528718 -121008541 + ID_B1 SINE B4 115 191 -33 7 825 442 315 0 113 chr5 31528729 31528825 -121008434 + B4 SINE B4 4 88 -204 7 825 180 0 0 0 chr5 31528825 31528845 -121008414 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 825 442 315 0 113 chr5 31528845 31528952 -121008307 + B4 SINE B4 89 184 -108 7 825 531 0 0 0 chr5 31528957 31529016 -121008243 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 825 183 139 0 0 chr5 31529016 31529052 -121008207 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 825 324 0 0 0 chr5 31529188 31529224 -121008035 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 825 351 282 131 94 chr5 31529275 31529650 -121007609 + MER74B LTR ERVL 72 487 -71 7 825 397 262 127 0 chr5 31529658 31529784 -121007475 - ID_B1 SINE B4 0 224 83 7 825 510 17 0 0 chr5 31529882 31529941 -121007318 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 825 499 194 151 0 chr5 31529941 31530034 -121007225 - B1_Mur4 SINE Alu -10 140 34 8 825 436 284 9 0 chr5 31530049 31530165 -121007094 - PB1D10 SINE Alu 0 117 1 8 825 225 215 40 133 chr5 31530977 31531052 -121006207 + ID4_ SINE ID 16 83 0 8 825 6337 208 39 70 chr5 31531390 31533222 -121004037 + Lx6 LINE L1 256 2032 -3848 8 825 1175 51 0 0 chr5 31533222 31533359 -121003900 - B1_Mm SINE Alu -8 139 3 8 825 6337 141 29 48 chr5 31533359 31533800 -121003459 + Lx6 LINE L1 2033 2449 -3431 8 825 337 211 240 0 chr5 31534058 31534162 -121003097 + Lx6 LINE L1 2422 2550 -3330 8 825 11943 140 30 132 chr5 31534172 31534254 -121003005 + Lx6 LINE L1 3387 3467 -2413 8 825 1225 118 5 36 chr5 31534254 31534413 -121002846 + B2_Mm2 SINE B2 1 158 -37 8 825 252 0 0 0 chr5 31534413 31534441 -121002818 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 8 825 1225 118 5 36 chr5 31534441 31534474 -121002785 + B2_Mm2 SINE B2 159 187 -8 8 825 11943 140 30 132 chr5 31534474 31535152 -121002107 + Lx6 LINE L1 3468 4133 -1747 8 825 1257 41 0 0 chr5 31535152 31535299 -121001960 + B1_Mm SINE Alu 1 147 0 8 825 11943 140 30 132 chr5 31535299 31535413 -121001846 + Lx6 LINE L1 4134 4182 -1698 8 825 441 103 0 0 chr5 31535413 31535481 -121001778 + (TA)n Simple_repeat Simple_repeat 2 69 0 8 825 11943 140 30 132 chr5 31535481 31535801 -121001458 + Lx6 LINE L1 4183 4514 -1366 8 825 747 202 52 94 chr5 31535801 31535848 -121001411 + B2_Mm2 SINE B2 2 38 -157 8 825 1005 129 0 7 chr5 31535848 31535996 -121001263 - B1_Mus1 SINE Alu 0 148 2 9 825 747 202 52 94 chr5 31535996 31536139 -121001120 + B2_Mm2 SINE B2 39 184 -11 9 825 11943 140 30 132 chr5 31536139 31536399 -121000860 + Lx6 LINE L1 4515 4754 -1126 8 825 1100 83 14 0 chr5 31536399 31536544 -121000715 + B1_Mus1 SINE Alu 2 148 0 9 825 281 0 0 71 chr5 31536546 31536588 -121000671 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 825 11943 140 30 132 chr5 31536588 31537314 -120999945 + Lx6 LINE L1 4755 5488 -392 8 825 1129 96 0 0 chr5 31537314 31537460 -120999799 - B1_Mus1 SINE Alu 0 148 3 9 825 11943 184 102 68 chr5 31537460 31538656 -120998603 + Lx6 LINE L1 5489 6698 -762 8 825 861 149 7 21 chr5 31538656 31538800 -120998459 + B1_Mur3 SINE Alu 3 144 -5 9 825 1197 41 7 7 chr5 31538807 31538953 -120998306 + B1_Mm SINE Alu 2 147 0 9 825 6282 206 138 37 chr5 31538953 31539238 -120998021 + Lx6 LINE L1 6706 7111 -349 8 825 210 37 0 0 chr5 31539238 31539265 -120997994 + (TA)n Simple_repeat Simple_repeat 2 28 0 9 825 6282 206 138 37 chr5 31539265 31539430 -120997829 + Lx6 LINE L1 7112 7298 -162 8 825 441 0 0 0 chr5 31539544 31539593 -120997666 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 825 289 293 99 87 chr5 31539675 31539697 -120997562 + MT2B LTR ERVL 78 112 -489 9 825 316 242 0 0 chr5 31539697 31539759 -120997500 + PB1D10 SINE Alu 23 84 -33 1 825 539 239 18 0 chr5 31539756 31539869 -120997390 + PB1D9 SINE Alu 6 120 0 1 825 289 293 99 87 chr5 31539759 31539836 -120997423 + MT2B LTR ERVL 113 240 -361 9 825 331 232 0 42 chr5 31539883 31539955 -120997304 - ID_B1 SINE B4 -132 92 24 1 825 283 292 0 22 chr5 31540007 31540098 -120997161 + CT-rich Low_complexity Low_complexity 4 92 0 1 825 648 223 50 0 chr5 31540542 31540681 -120996578 + B1_Mus2 SINE Alu 1 146 -1 1 825 549 220 16 25 chr5 31540712 31540833 -120996426 - PB1D9 SINE Alu 0 120 1 1 825 621 211 15 0 chr5 31541116 31541249 -120996010 - B1_Mus2 SINE Alu -12 135 1 1 825 755 262 80 20 chr5 31541256 31541455 -120995804 - B3 SINE B2 0 216 6 1 825 843 140 0 7 chr5 31541473 31541610 -120995649 - B1_Mus2 SINE Alu 0 147 12 1 825 826 213 0 0 chr5 31541663 31541813 -120995446 - B1_Mur4 SINE Alu 0 150 1 1 825 404 262 73 27 chr5 31542145 31542255 -120995004 - PB1D10 SINE Alu 0 117 3 1 825 303 107 214 0 chr5 31542267 31542323 -120994936 - PB1D9 SINE Alu -1 119 52 1 825 215 152 22 0 chr5 31543656 31543702 -120993557 + G-rich Low_complexity Low_complexity 3 49 0 1 825 26 74 0 0 chr5 31543722 31543776 -120993483 + GC_rich Low_complexity Low_complexity 1 54 0 1 825 207 0 0 0 chr5 31544975 31544998 -120992261 + (T)n Simple_repeat Simple_repeat 1 23 0 1 825 190 336 18 71 chr5 31545235 31545347 -120991912 + L2a LINE L2 3320 3425 -1 1 825 1217 55 0 14 chr5 31545529 31545677 -120991582 + B1_Mm SINE Alu 1 146 -1 1 825 315 168 303 40 chr5 31547471 31547561 -120989698 + B1_Mur2 SINE Alu 6 121 -28 1 825 342 45 0 0 chr5 31547561 31547605 -120989654 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 825 222 91 0 0 chr5 31547658 31547691 -120989568 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 1 825 713 214 15 0 chr5 31550789 31550920 -120986339 + ID_B1 SINE B4 85 217 -7 1 825 481 60 45 0 chr5 31551074 31551141 -120986118 + B1_Mus2 SINE Alu 65 134 -13 1 825 770 150 90 0 chr5 31551403 31551536 -120985723 + B1_Mur4 SINE Alu 5 149 -1 1 825 825 206 20 0 chr5 31551571 31551717 -120985542 + B1F SINE Alu 1 149 0 1 825 233 57 29 0 chr5 31557756 31557791 -120979468 + (GGGGA)n Simple_repeat Simple_repeat 1 36 0 1 825 189 246 30 90 chr5 31557878 31557945 -120979314 - L3 LINE CR1 -936 3553 3491 1 825 1473 40 40 0 chr5 31558149 31558322 -120978937 + B2_Mm2 SINE B2 2 181 -14 1 825 412 239 11 0 chr5 31558357 31558445 -120978814 + ID_B1 SINE B4 131 219 -5 1 825 1232 50 0 0 chr5 31558639 31558780 -120978479 - B1_Mus2 SINE Alu -5 142 2 1 825 307 356 65 37 chr5 31559437 31559653 -120977606 + RMER12 LTR ERVK 737 958 -364 1 825 831 221 62 21 chr5 31560722 31560916 -120976343 - B3 SINE B2 0 216 15 1 825 651 185 72 29 chr5 31560991 31561130 -120976129 - B2_Mm2 SINE B2 -5 190 46 1 825 1401 41 0 6 chr5 31561194 31561364 -120975895 + B2_Mm2 SINE B2 2 170 -25 1 825 252 360 30 67 chr5 31561864 31562028 -120975231 + MTEa LTR MaLR 15 172 -207 1 825 961 262 247 12 chr5 31561887 31562300 -120974959 + MLT2B4 LTR ERVL 39 548 -8 1 825 578 238 39 31 chr5 31563642 31563772 -120973487 + RSINE1 SINE B4 2 132 -33 1 825 1040 167 131 0 chr5 31563968 31564166 -120973093 - URR1A DNA MER1_type 0 226 3 1 825 649 219 29 21 chr5 31564863 31565003 -120972256 - B1_Mur2 SINE Alu -7 142 2 1 825 680 223 22 0 chr5 31565022 31565161 -120972098 - ID_B1 SINE B4 -1 223 82 1 825 204 170 19 19 chr5 31565886 31565940 -120971319 + (GGCTG)n Simple_repeat Simple_repeat 2 55 0 1 825 405 0 0 0 chr5 31566429 31566474 -120970785 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 825 182 229 0 164 chr5 31566504 31566577 -120970682 + MIR SINE MIR 8 68 -194 1 825 494 109 50 8 chr5 31567034 31567154 -120970105 + (TG)n Simple_repeat Simple_repeat 1 125 0 1 825 654 278 75 47 chr5 31567164 31567443 -120969816 - B4A SINE B4 0 292 6 1 825 278 250 0 0 chr5 31569209 31569265 -120967994 - tRNA-Ala-GCY_ tRNA tRNA -18 57 2 1 825 232 286 53 18 chr5 31569299 31569356 -120967903 + Arthur1C DNA Tip100 302 360 -3 1 825 1448 291 140 21 chr5 31570346 31571118 -120966141 + Lx8 LINE L1 6577 7440 -33 1 825 1276 34 0 0 chr5 31571120 31571267 -120965992 + B1_Mm SINE Alu 1 147 0 1 825 207 0 0 0 chr5 31571267 31571290 -120965969 + (A)n Simple_repeat Simple_repeat 1 23 0 1 825 257 384 102 7 chr5 31571450 31571597 -120965662 - L2 LINE L2 -428 2991 2831 1 825 1236 214 5 5 chr5 31571613 31571834 -120965425 - ID_B1 SINE B4 -1 223 3 1 825 713 186 23 0 chr5 31571887 31571901 -120965358 + ID SINE ID 67 83 -141 1 825 387 275 48 27 chr5 31571901 31572028 -120965231 + B1_Mur3 SINE Alu 1 131 -18 1 825 900 211 98 0 chr5 31572028 31572222 -120965037 + B3 SINE B2 2 214 -2 1 825 387 275 48 27 chr5 31572222 31572240 -120965019 + B1_Mur3 SINE Alu 132 149 0 1 825 758 254 28 50 chr5 31572600 31572782 -120964477 + B3A SINE B2 3 180 -18 1 825 1309 182 180 9 chr5 31572797 31573113 -120964146 + ORR1D1 LTR MaLR 1 370 -4 1 825 1420 88 5 15 chr5 31573140 31573336 -120963923 + B2_Mm2 SINE B2 2 195 0 1 825 213 182 0 64 chr5 31573354 31573401 -120963858 + B1_Mus1 SINE Alu 1 44 -104 1 825 968 143 13 13 chr5 31573408 31573557 -120963702 - B1_Mur4 SINE Alu -1 149 1 1 825 696 247 85 25 chr5 31573624 31573823 -120963436 + B3A SINE B2 4 214 -2 1 825 375 23 0 0 chr5 31574753 31574797 -120962462 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 825 257 298 0 0 chr5 31574837 31574894 -120962365 - B4 SINE B4 -4 288 232 1 825 966 97 88 33 chr5 31575052 31575233 -120962026 + B2_Mm2 SINE B2 1 191 -4 1 825 411 325 16 0 chr5 31575808 31575931 -120961328 + PB1 SINE Alu 1 125 -2 1 825 186 71 0 0 chr5 31575982 31576010 -120961249 + (T)n Simple_repeat Simple_repeat 1 28 0 1 825 1260 34 0 0 chr5 31576010 31576156 -120961103 - B1_Mus2 SINE Alu 0 147 2 1 825 396 356 113 40 chr5 31576167 31576184 -120961075 + L1MEe LINE L1 1221 1237 -4847 1 825 566 314 48 5 chr5 31576184 31576353 -120960906 + B3A SINE B2 2 178 -20 1 825 237 33 0 0 chr5 31576353 31576383 -120960876 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 825 566 314 48 5 chr5 31576383 31576402 -120960857 + B3A SINE B2 179 197 -1 1 825 400 334 118 44 chr5 31576402 31576739 -120960520 + L1MEe LINE L1 1238 1620 -4388 1 825 303 195 163 54 chr5 31576749 31576841 -120960418 + PB1D10 SINE Alu 1 102 -15 1 825 1116 180 79 10 chr5 31577044 31577246 -120960013 + B3 SINE B2 1 216 0 1 825 293 0 27 0 chr5 31577370 31577407 -120959852 + (CAG)n Simple_repeat Simple_repeat 1 38 0 1 825 659 225 84 78 chr5 31577430 31577584 -120959675 + RSINE1 SINE B4 11 165 0 1 825 245 304 87 87 chr5 31577584 31577607 -120959652 + B2_Mm2 SINE B2 40 187 -8 1 825 455 90 25 13 chr5 31578687 31578766 -120958493 - RMER17D2 LTR ERVK 0 809 730 1 825 232 36 0 0 chr5 31578763 31578791 -120958468 - RMER17D2 LTR ERVK -781 28 1 1 825 418 247 97 0 chr5 31579555 31579648 -120957611 + ID_B1 SINE B4 99 200 -24 1 825 226 355 68 25 chr5 31579723 31579746 -120957513 + B4A SINE B4 72 160 -132 1 825 286 339 107 0 chr5 31579746 31579867 -120957392 + B1F1 SINE Alu 11 144 -5 1 825 226 355 68 25 chr5 31579867 31579885 -120957374 + B4A SINE B4 161 240 -52 1 825 548 243 27 0 chr5 31580194 31580305 -120956954 + PB1D10 SINE Alu 3 116 -1 1 825 1204 75 0 0 chr5 31580366 31580512 -120956747 + B1_Mus2 SINE Alu 2 147 0 1 825 374 281 91 0 chr5 31580529 31580650 -120956609 + Charlie4z DNA MER1_type 36 167 0 1 825 189 0 0 0 chr5 31580660 31580681 -120956578 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 825 180 0 0 0 chr5 31580681 31580700 -120956559 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 825 218 209 179 0 chr5 31581083 31581150 -120956109 - ID4_ SINE ID -4 79 1 1 825 23 0 0 0 chr5 31581157 31581180 -120956079 + AT_rich Low_complexity Low_complexity 1 23 0 1 825 500 83 14 0 chr5 31581180 31581252 -120956007 + B1_Mus2 SINE Alu 75 147 0 1 825 295 211 0 0 chr5 31581302 31581354 -120955905 - RSINE1 SINE B4 -28 137 86 1 825 45 62 0 0 chr5 31584191 31584271 -120952988 + AT_rich Low_complexity Low_complexity 1 80 0 1 825 309 197 105 0 chr5 31584271 31584347 -120952912 - PB1D7 SINE Alu 0 120 37 1 825 466 186 0 65 chr5 31584409 31584501 -120952758 - B1F1 SINE Alu -1 148 63 1 825 256 279 8 112 chr5 31585704 31585829 -120951430 + MT2B LTR ERVL 153 264 -337 1 825 701 206 8 8 chr5 31585732 31585864 -120951395 + B1F2 SINE Alu 18 149 0 1 825 484 226 164 21 chr5 31587130 31587270 -120949989 - RSINE1 SINE B4 -4 161 2 1 825 286 273 13 0 chr5 31587280 31587357 -120949902 + (TA)n Simple_repeat Simple_repeat 1 78 0 1 826 489 292 162 6 chr5 31589578 31589757 -120947502 - ID_B1 SINE B4 -17 207 1 1 826 279 0 0 0 chr5 31590272 31590303 -120946956 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 1 826 261 229 0 16 chr5 31590442 31590504 -120946755 + tRNA-Ala-GCG tRNA tRNA 9 69 -6 1 826 258 299 52 0 chr5 31590504 31590516 -120946743 + B4A SINE B4 15 92 -200 1 826 864 179 0 7 chr5 31590547 31590688 -120946571 + ID_B1 SINE B4 85 224 0 1 826 22 0 0 0 chr5 31591110 31591132 -120946127 + AT_rich Low_complexity Low_complexity 1 22 0 1 826 560 310 36 27 chr5 31591364 31591583 -120945676 - MIR SINE MIR -37 225 5 2 826 580 216 112 0 chr5 31591627 31591752 -120945507 - B1_Mur3 SINE Alu -7 142 4 2 826 466 278 9 27 chr5 31591756 31591867 -120945392 - PB1D10 SINE Alu 0 117 9 2 826 201 39 0 0 chr5 31591881 31591907 -120945352 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 2 826 778 267 126 9 chr5 31591933 31592156 -120945103 - B4A SINE B4 -4 288 40 2 826 576 223 9 0 chr5 31592312 31592424 -120944835 - RSINE1 SINE B4 -49 116 4 2 826 449 194 15 23 chr5 31592438 31592570 -120944689 + C-rich Low_complexity Low_complexity 5 135 0 2 826 610 196 45 0 chr5 31592571 31592683 -120944576 - ID_B1 SINE B4 -17 207 91 2 826 198 0 0 0 chr5 31593279 31593301 -120943958 + (T)n Simple_repeat Simple_repeat 1 22 0 2 826 227 294 97 11 chr5 31593917 31594027 -120943232 - MIRb SINE MIR -125 151 40 2 826 290 284 0 0 chr5 31598671 31598738 -120938521 - L2a LINE L2 -1 3425 3359 2 826 180 0 0 0 chr5 31598944 31598964 -120938295 + (T)n Simple_repeat Simple_repeat 1 20 0 2 826 1175 88 0 0 chr5 31598964 31599111 -120938148 - B1_Mus1 SINE Alu 0 148 2 2 826 180 273 73 0 chr5 31599248 31599303 -120937956 + MIR SINE MIR 82 140 -68 2 826 603 231 44 37 chr5 31600156 31600291 -120936968 - ID_B1 SINE B4 0 224 89 2 826 758 179 8 0 chr5 31600899 31601022 -120936237 - RSINE1 SINE B4 -35 130 7 2 826 721 148 260 23 chr5 31601371 31601544 -120935715 - B3 SINE B2 -2 214 1 2 826 234 81 0 0 chr5 31602478 31602515 -120934744 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 826 1257 85 0 12 chr5 31602515 31602681 -120934578 - B2_Mm2 SINE B2 -31 164 1 2 826 219 220 100 0 chr5 31602789 31602839 -120934420 + L2b LINE L2 3294 3348 -27 2 826 435 259 132 7 chr5 31603439 31603583 -120933676 + MER58B DNA MER1_type 180 341 0 2 826 350 220 148 10 chr5 31603594 31603695 -120933564 + MER5A1 DNA MER1_type 28 142 -24 2 826 426 275 0 0 chr5 31603895 31604004 -120933255 + PB1D9 SINE Alu 7 115 -5 2 826 968 126 0 0 chr5 31604083 31604218 -120933041 - B1_Mur3 SINE Alu -1 148 14 2 826 1084 16 0 0 chr5 31604219 31604347 -120932912 + B1_Mm SINE Alu 20 147 0 2 826 234 0 0 0 chr5 31604355 31604381 -120932878 + (A)n Simple_repeat Simple_repeat 1 26 0 2 826 490 153 3 0 chr5 31604689 31604773 -120932486 + B1_Mur3 SINE Alu 51 136 -13 2 826 243 234 0 144 chr5 31604704 31604774 -120932485 + ID_B1 SINE B4 146 209 -15 2 826 270 0 0 0 chr5 31604774 31604804 -120932455 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 826 243 234 0 144 chr5 31604804 31604823 -120932436 + ID_B1 SINE B4 210 222 -2 2 826 192 152 0 0 chr5 31604909 31604942 -120932317 + A-rich Low_complexity Low_complexity 1 33 0 2 826 425 263 95 0 chr5 31605164 31605259 -120932000 - PB1D7 SINE Alu -12 108 5 2 826 195 291 77 127 chr5 31605731 31605912 -120931347 - MER5B DNA MER1_type -2 176 5 2 826 1267 113 5 16 chr5 31606088 31606276 -120930983 + B2_Mm2 SINE B2 2 187 -8 2 826 695 250 128 0 chr5 31606299 31606479 -120930780 + B4A SINE B4 90 292 0 2 826 242 56 28 0 chr5 31606504 31606540 -120930719 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 2 826 936 130 7 0 chr5 31606949 31607087 -120930172 - B1_Mus1 SINE Alu 0 148 10 2 826 1037 199 5 30 chr5 31608110 31608312 -120928947 - B3A SINE B2 0 198 2 2 826 302 325 33 71 chr5 31610312 31610494 -120926765 + MIR3 SINE MIR 7 181 -27 2 826 1933 166 119 5 chr5 31610742 31611111 -120926148 - MTD LTR MaLR -8 411 1 2 826 767 192 102 10 chr5 31613798 31614003 -120923256 - MTD LTR MaLR 0 419 196 2 826 525 71 0 0 chr5 31614010 31614080 -120923179 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 2 826 1228 48 0 0 chr5 31614089 31614236 -120923023 - B1_Mm SINE Alu 0 147 1 2 826 468 0 0 0 chr5 31614263 31614315 -120922944 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 826 298 218 179 0 chr5 31614328 31614406 -120922853 - RSINE1 SINE B4 -71 94 3 2 826 578 182 220 0 chr5 31614406 31614564 -120922695 - MTD LTR MaLR -211 210 18 2 826 544 233 36 50 chr5 31614745 31614885 -120922374 + ID_B1 SINE B4 84 221 -3 2 826 306 354 94 19 chr5 31614917 31615225 -120922034 - L1MC4 LINE L1 -194 7848 7518 2 826 229 290 37 70 chr5 31615424 31615639 -120921620 - L1MC4 LINE L1 -804 7238 7031 2 826 563 246 49 0 chr5 31615644 31615786 -120921473 - B1F SINE Alu 0 149 1 2 826 641 237 41 55 chr5 31615825 31616044 -120921215 - B3 SINE B2 0 216 1 2 826 830 201 0 0 chr5 31616084 31616228 -120921031 - B1_Mur3 SINE Alu -5 144 1 2 826 784 30 29 29 chr5 31616240 31616376 -120920883 + (TTCTC)n Simple_repeat Simple_repeat 5 140 0 2 826 993 268 18 0 chr5 31616399 31616623 -120920636 - Lx6 LINE L1 -27 7433 7206 2 826 189 0 0 0 chr5 31616769 31616790 -120920469 + (T)n Simple_repeat Simple_repeat 1 21 0 2 826 238 138 35 0 chr5 31616792 31616850 -120920409 + A-rich Low_complexity Low_complexity 2 61 0 2 826 941 207 167 49 chr5 31617303 31617669 -120919590 - RLTR9E LTR ERVK 0 409 1 2 826 516 143 173 8 chr5 31617669 31617796 -120919463 - MMETn-int LTR ERVK 0 4844 4697 2 826 698 192 63 35 chr5 31617799 31618051 -120919208 - RLTR13B1 LTR ERVK -465 437 153 2 826 7380 111 9 1 chr5 31618051 31619025 -120918234 - ETnERV2-int LTR ERVK -203 7203 6222 2 826 16694 187 25 14 chr5 31619074 31623746 -120913513 - ETnERV2-int LTR ERVK -1179 6227 841 2 826 1694 170 101 26 chr5 31624028 31624373 -120912886 - ORR1D1 LTR MaLR -3 371 1 2 826 1279 27 0 0 chr5 31624391 31624538 -120912721 - B1_Mm SINE Alu 0 147 1 2 826 279 0 0 0 chr5 31624670 31624701 -120912558 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 2 826 510 131 128 29 chr5 31624710 31624812 -120912447 - B1_Mus1 SINE Alu -29 119 8 2 826 1233 239 104 11 chr5 31625094 31625441 -120911818 - MTD LTR MaLR 0 419 41 2 826 286 262 37 12 chr5 31625490 31625571 -120911688 + RSINE1 SINE B4 3 85 -80 2 826 339 239 250 0 chr5 31625610 31625698 -120911561 + PB1D10 SINE Alu 3 112 -5 2 826 579 238 7 59 chr5 31625747 31625899 -120911360 + RSINE1 SINE B4 4 147 -18 2 826 306 50 0 0 chr5 31625901 31625941 -120911318 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 826 722 268 10 35 chr5 31626158 31626355 -120910904 + B3 SINE B2 1 192 -24 2 826 3169 145 52 84 chr5 31627241 31627872 -120909387 - RLTR18 LTR ERVK -4 612 2 2 826 568 124 289 9 chr5 31627951 31628065 -120909194 + B1_Mur4 SINE Alu 5 150 0 2 826 358 345 45 35 chr5 31628126 31628436 -120908823 - MLT1K LTR MaLR -257 338 26 2 826 5366 52 13 13 chr5 31630009 31630694 -120906565 - L1Md_F2 LINE L1 0 6582 5898 2 826 239 250 19 77 chr5 31631093 31631197 -120906062 + PB1D10 SINE Alu 14 111 -6 2 826 4302 25 0 2 chr5 31631326 31631809 -120905450 - LTRIS_Mm LTR ERV1 0 482 1 2 826 22556 52 2 27 chr5 31631809 31634628 -120902631 - MuRRS-int LTR ERV1 0 4690 1941 2 826 906 46 0 0 chr5 31634625 31634733 -120902526 + MuRRS-int LTR ERV1 2385 2492 -2198 2 826 11673 57 24 6 chr5 31634731 31636408 -120900851 - MuRRS-int LTR ERV1 -2750 1940 1 2 826 407 68 17 0 chr5 31636531 31636590 -120900669 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 826 1036 274 65 27 chr5 31636966 31637334 -120899925 - RodERV21-int LTR ERV1 -198 4793 4412 2 826 545 355 55 68 chr5 31637340 31637997 -120899262 - RodERV21-int LTR ERV1 -1444 3547 2900 2 826 293 158 26 62 chr5 31638524 31638636 -120898623 - MER52-int LTR ERV1 -2658 4948 4890 2 826 377 296 66 30 chr5 31639024 31639334 -120897925 - MER52-int LTR ERV1 -1973 5118 4978 2 826 259 374 13 18 chr5 31639633 31639859 -120897400 - MER52-int LTR ERV1 -3906 3695 3471 2 826 537 322 26 50 chr5 31640100 31640440 -120896819 - RodERV21-int LTR ERV1 -3017 4074 3743 2 826 4156 250 36 13 chr5 31640695 31641675 -120895584 - RodERV21-int LTR ERV1 -2273 2718 1717 2 826 267 290 76 121 chr5 31641743 31641900 -120895359 - RMER17C-int LTR ERVK -2714 524 375 2 826 3196 152 137 14 chr5 31642744 31642999 -120894260 + RMER19A LTR ERVK 1 287 -450 2 826 3310 53 5 0 chr5 31642999 31643397 -120893862 - MTB LTR MaLR 0 400 1 2 826 3196 152 137 14 chr5 31643397 31643797 -120893462 + RMER19A LTR ERVK 288 737 0 2 826 15148 155 21 197 chr5 31643800 31649532 -120887727 + L1_Mus2 LINE L1 238 4732 -1151 2 826 495 0 0 0 chr5 31649532 31649587 -120887672 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 2 826 15148 97 18 108 chr5 31649587 31651394 -120885865 + L1_Mus2 LINE L1 4733 6566 0 2 826 547 310 88 49 chr5 31651415 31651948 -120885311 + L1MC3 LINE L1 6862 7415 -370 2 826 333 260 14 0 chr5 31652115 31652188 -120885071 - ID_B1 SINE B4 -23 201 128 2 826 763 233 95 0 chr5 31652245 31652434 -120884825 + B3 SINE B2 2 208 -8 2 826 495 0 0 0 chr5 31653038 31653093 -120884166 + (AGTTG)n Simple_repeat Simple_repeat 4 58 0 2 826 650 186 0 0 chr5 31653440 31653558 -120883701 + B1_Mur2 SINE Alu 2 119 -30 2 826 352 260 76 45 chr5 31653558 31653595 -120883664 + B4A SINE B4 87 246 -46 2 826 224 212 0 15 chr5 31653600 31653667 -120883592 + GA-rich Low_complexity Low_complexity 2 67 0 2 826 412 297 61 10 chr5 31654070 31654312 -120882947 - L1M5 LINE L1 -685 5555 5309 2 826 316 236 76 33 chr5 31654362 31654454 -120882805 - RSINE1 SINE B4 -61 104 9 2 826 232 269 15 0 chr5 31654581 31654648 -120882611 - L1M5 LINE L1 -1121 5025 4958 2 826 260 111 0 22 chr5 31654742 31654788 -120882471 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 826 414 240 114 119 chr5 31655147 31655549 -120881710 - L1MC5 LINE L1 -173 7788 7389 2 826 335 268 107 38 chr5 31655555 31655714 -120881545 + Lx8 LINE L1 7291 7460 -13 2 826 294 123 0 0 chr5 31656278 31656335 -120880924 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 826 263 233 83 0 chr5 31656343 31656403 -120880856 - ID2 SINE ID -17 66 2 2 826 29 0 0 0 chr5 31656410 31656439 -120880820 + AT_rich Low_complexity Low_complexity 1 29 0 2 826 425 294 51 35 chr5 31656775 31657032 -120880227 - L1M5 LINE L1 -2204 3942 3682 2 826 261 0 0 0 chr5 31657099 31657128 -120880131 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 826 3214 53 8 0 chr5 31657643 31658040 -120879219 + MTB LTR MaLR 1 400 0 2 826 229 208 0 0 chr5 31659133 31659186 -120878073 + T-rich Low_complexity Low_complexity 1 53 0 2 826 345 0 22 0 chr5 31659193 31659239 -120878020 - L1_Mus2 LINE L1 -2 6564 6518 3 826 4364 94 21 14 chr5 31659239 31659862 -120877397 - L1_Mus3 LINE L1 -14 6624 5998 3 826 493 108 36 0 chr5 31660499 31660610 -120876649 + (TCTG)n Simple_repeat Simple_repeat 2 116 0 3 826 543 53 0 0 chr5 31660612 31660687 -120876572 + (CA)n Simple_repeat Simple_repeat 1 75 0 3 826 1122 270 35 3 chr5 31660723 31661039 -120876220 - MLT2C2 LTR ERVL -138 326 1 3 826 1198 68 0 0 chr5 31661092 31661239 -120876020 + B1_Mus2 SINE Alu 1 147 0 3 826 694 260 22 22 chr5 31661288 31661469 -120875790 - B3A SINE B2 -16 182 2 3 826 320 111 19 0 chr5 31661469 31661523 -120875736 + (TCC)n Simple_repeat Simple_repeat 3 57 0 3 826 1207 48 0 13 chr5 31661600 31661749 -120875510 - B1_Mus1 SINE Alu -1 147 1 3 826 23 0 0 0 chr5 31661756 31661779 -120875480 + AT_rich Low_complexity Low_complexity 1 23 0 3 826 4611 58 0 5 chr5 31661789 31662360 -120874899 - L1_Mus1 LINE L1 -2 6565 5998 3 826 7767 61 15 4 chr5 31662360 31663368 -120873891 - L1Md_F2 LINE L1 -10 6572 5553 3 826 864 211 28 23 chr5 31663374 31663592 -120873667 - L1Md_F LINE L1 -6043 476 258 3 826 796 256 135 67 chr5 31663582 31663681 -120873578 - L1MEg LINE L1 -1145 5001 4903 3 826 180 0 0 0 chr5 31663681 31663701 -120873558 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 826 796 256 135 67 chr5 31663701 31663848 -120873411 - L1MEg LINE L1 -1244 4902 4722 3 826 1258 85 45 11 chr5 31663848 31664027 -120873232 - B2_Mm1t SINE B2 -8 185 1 3 826 796 256 135 67 chr5 31664027 31664154 -120873105 - L1MEg LINE L1 -1425 4721 4596 3 826 2360 166 87 35 chr5 31664154 31664661 -120872598 - RMER16 LTR ERVK 0 533 1 3 826 796 256 135 67 chr5 31664661 31664795 -120872464 - L1MEg LINE L1 -1551 4595 4460 3 826 625 254 87 4 chr5 31665283 31665512 -120871747 - L1MA4A LINE L1 -375 5928 5681 3 826 268 211 103 21 chr5 31666306 31666403 -120870856 - L1MEg LINE L1 -4685 1557 1453 3 826 887 270 16 99 chr5 31666625 31666929 -120870330 + B4 SINE B4 2 280 -12 3 826 424 321 44 7 chr5 31667224 31667359 -120869900 - B1F SINE Alu -8 141 2 3 826 377 303 69 44 chr5 31667359 31667383 -120869876 - ID_B1 SINE B4 -8 216 54 3 826 369 324 0 0 chr5 31667478 31667580 -120869679 + MTE2a LTR MaLR 20 121 -258 3 826 282 278 13 65 chr5 31667784 31667861 -120869398 + ID4_ SINE ID 2 74 -9 3 826 922 210 43 5 chr5 31667798 31667985 -120869274 + B3 SINE B2 13 206 -10 3 826 733 60 110 0 chr5 31667996 31668096 -120869163 + B1_Mus1 SINE Alu 3 113 -35 3 826 2955 193 58 53 chr5 31668098 31668606 -120868653 - RLTR1D LTR ERV1 0 605 95 3 826 315 0 0 0 chr5 31668606 31668641 -120868618 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 826 2955 193 58 53 chr5 31668641 31668734 -120868525 - RLTR1D LTR ERV1 -511 94 2 3 826 626 63 0 0 chr5 31668734 31668813 -120868446 - RLTR1B-int LTR ERV1 0 3299 3221 3 826 3194 94 9 7 chr5 31668867 31669297 -120867962 - MMVL30-int LTR ERV1 -68 3630 3200 3 826 397 244 0 0 chr5 31669299 31669381 -120867878 + ID_B1 SINE B4 136 217 -7 3 826 1023 177 193 0 chr5 31669779 31669960 -120867299 + B3 SINE B2 1 216 0 3 826 900 178 203 11 chr5 31670196 31670383 -120866876 - URR1B DNA MER1_type 0 225 3 3 826 478 0 32 0 chr5 31670690 31670752 -120866507 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 826 306 0 0 0 chr5 31670752 31670785 -120866474 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 826 377 284 109 35 chr5 31671395 31671596 -120865663 - Charlie21a DNA MER1_type -807 406 191 3 826 2304 141 44 3 chr5 31671833 31672197 -120865062 + RLTR14 LTR ERV1 2 380 -2 3 826 369 0 0 0 chr5 31672401 31672442 -120864817 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 826 474 353 45 0 chr5 31672450 31672583 -120864676 - RSINE1 SINE B4 -25 140 2 3 826 550 323 0 52 chr5 31672719 31672892 -120864367 - RSINE1 SINE B4 0 165 2 3 826 25 31 0 0 chr5 31672896 31672928 -120864331 + AT_rich Low_complexity Low_complexity 1 32 0 3 826 1349 31 0 0 chr5 31673196 31673356 -120863903 + B2_Mm1a SINE B2 1 160 -33 3 826 507 45 0 0 chr5 31673356 31673422 -120863837 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 3 826 10404 102 6 63 chr5 31673663 31673952 -120863307 - L1_Mm LINE L1 -702 5181 4927 3 826 1199 89 0 0 chr5 31673952 31674098 -120863161 - B1_Mm SINE Alu 0 147 2 3 826 10404 102 6 63 chr5 31674098 31674158 -120863101 - L1_Mm LINE L1 -957 4926 4876 3 826 2356 99 12 18 chr5 31674158 31674497 -120862762 + L1Md_F2 LINE L1 6244 6580 -2 3 826 10404 102 6 63 chr5 31674497 31675835 -120861424 - L1_Mm LINE L1 -1008 4875 3589 3 826 3805 94 7 2 chr5 31675834 31676398 -120860861 - MusHAL1 LINE L1 -1886 826 260 3 826 262 372 13 22 chr5 31676657 31676885 -120860374 + MER52-int LTR ERV1 3470 3695 -3906 3 826 409 302 29 48 chr5 31677211 31677536 -120859723 + MER52-int LTR ERV1 4978 5118 -1973 3 826 3401 96 47 31 chr5 31677664 31678237 -120859022 - RMER17A LTR ERVK -169 582 1 3 826 1879 343 57 26 chr5 31678285 31679412 -120857847 + RodERV21-int LTR ERV1 3166 4327 -664 3 826 585 0 0 0 chr5 31679761 31679826 -120857433 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 826 9871 93 1 5 chr5 31681316 31683315 -120853944 - L1_Mus2 LINE L1 -63 6503 4511 3 826 189 0 0 0 chr5 31683330 31683351 -120853908 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 3 826 22061 109 6 13 chr5 31684715 31684826 -120852433 - L1_Mus2 LINE L1 -1358 4525 4429 3 826 923 125 0 0 chr5 31684826 31684962 -120852297 - L1_Mus1 LINE L1 0 6567 6432 3 826 22061 137 12 48 chr5 31684962 31689134 -120848125 - L1_Mus2 LINE L1 -1455 4428 412 3 826 21 0 0 0 chr5 31689143 31689164 -120848095 + AT_rich Low_complexity Low_complexity 1 21 0 3 826 793 220 99 0 chr5 31689801 31689992 -120847267 - B3 SINE B2 -6 210 1 3 826 870 164 12 6 chr5 31690207 31690367 -120846892 - URR1B DNA MER1_type 0 225 65 3 826 777 159 27 7 chr5 31690434 31690580 -120846679 + B2_Mm2 SINE B2 39 187 -8 3 826 9122 56 0 0 chr5 31690676 31691785 -120845474 + L1_Mm LINE L1 4700 5808 -75 3 826 1591 178 62 12 chr5 31692316 31692709 -120844550 + RLTR1 LTR ERV1 126 624 0 3 826 21 36 0 0 chr5 31693290 31693318 -120843941 + AT_rich Low_complexity Low_complexity 1 28 0 3 826 2414 295 7 18 chr5 31693500 31694271 -120842988 + MYSERV6-int LTR ERVK 452 1213 -7746 3 826 445 111 324 27 chr5 31694310 31694421 -120842838 - B2_Mm2 SINE B2 -5 190 47 3 826 1113 92 7 0 chr5 31694466 31694619 -120842640 - B2_Mm1t SINE B2 -39 154 1 3 826 7650 251 32 30 chr5 31694619 31696635 -120840624 + MYSERV6-int LTR ERVK 1244 3263 -5696 3 826 13887 92 49 2 chr5 31696635 31699111 -120838148 + L1_Mur1 LINE L1 240 3223 -2663 3 826 25739 129 16 18 chr5 31699110 31702507 -120834752 + L1_Mus3 LINE L1 1718 5111 -772 3 826 1417 96 21 21 chr5 31702507 31702698 -120834561 + B2_Mm2 SINE B2 1 191 -4 3 826 25739 92 12 12 chr5 31702698 31704223 -120833036 + L1_Mus3 LINE L1 5112 6631 -7 3 826 229 293 75 81 chr5 31704408 31704568 -120832691 - RMER4B LTR ERVK -80 505 347 3 826 886 309 35 27 chr5 31704624 31704990 -120832269 - RodERV21-int LTR ERV1 -198 4793 4425 3 826 204 286 0 18 chr5 31705060 31705117 -120832142 + GA-rich Low_complexity Low_complexity 3 58 0 3 826 225 354 12 0 chr5 31712300 31712382 -120824877 + LTR45C LTR ERV1 325 407 -132 3 826 6798 79 4 1 chr5 31714759 31715801 -120821458 + L1_Mus1 LINE L1 4942 5986 -581 3 826 3015 70 11 5 chr5 31715801 31716173 -120821086 + L1_Mus1 LINE L1 6194 6567 0 3 826 499 213 172 0 chr5 31716299 31716421 -120820838 + B4 SINE B4 115 257 -35 3 826 333 0 0 0 chr5 31716422 31716459 -120820800 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 826 471 90 0 0 chr5 31716459 31716537 -120820722 + (GA)n Simple_repeat Simple_repeat 1 78 0 3 826 307 327 89 45 chr5 31716550 31716662 -120820597 + RSINE1 SINE B4 36 152 -13 3 826 1158 76 0 0 chr5 31716682 31716826 -120820433 + B1_Mm SINE Alu 2 145 -2 3 826 360 0 0 0 chr5 31716826 31716866 -120820393 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 826 1147 227 0 5 chr5 31716907 31717124 -120820135 + B3 SINE B2 1 216 0 3 826 1861 214 64 2 chr5 31717503 31717896 -120819363 - MTD LTR MaLR 0 419 3 3 826 32 26 0 0 chr5 31718775 31718814 -120818445 + AT_rich Low_complexity Low_complexity 1 39 0 3 826 495 342 52 7 chr5 31718814 31718967 -120818292 + RSINE1 SINE B4 2 161 -4 3 826 219 36 0 0 chr5 31718982 31719010 -120818249 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 826 251 367 54 22 chr5 31719023 31719115 -120818144 - RSINE1 SINE B4 -33 132 38 3 826 503 325 8 0 chr5 31719262 31719385 -120817874 + RSINE1 SINE B4 2 125 -40 3 103 456 72 0 0 chr5 31719405 31719474 -120817785 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 827 7135 135 51 25 chr5 31719503 31721281 -120815978 + L1_Mus2 LINE L1 524 2346 -3537 3 827 19435 52 3 1 chr5 31721280 31724374 -120812885 - L1Md_F2 LINE L1 -2 6580 3481 3 827 23408 107 16 26 chr5 31724374 31725512 -120811747 + L1Md_F2 LINE L1 2332 3476 -2407 3 827 252 0 0 0 chr5 31725512 31725540 -120811719 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 827 23408 107 16 26 chr5 31725540 31727232 -120810027 + L1_Mus2 LINE L1 3477 5174 -709 3 827 877 111 22 0 chr5 31727232 31727367 -120809892 + B1_Mus1 SINE Alu 5 142 -6 3 827 645 14 0 0 chr5 31727369 31727443 -120809816 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 3 827 23408 71 9 14 chr5 31727443 31728285 -120808974 + L1_Mus2 LINE L1 5175 5972 -594 3 827 424 67 0 0 chr5 31728284 31728344 -120808915 + L1_Mus2 LINE L1 6435 6494 -72 3 827 948 182 193 0 chr5 31728530 31728711 -120808548 - B3 SINE B2 0 216 1 3 827 525 16 0 0 chr5 31728820 31728882 -120808377 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 3 827 534 291 48 0 chr5 31729153 31729318 -120807941 - ID_B1 SINE B4 -1 223 51 3 827 495 293 8 0 chr5 31729304 31729427 -120807832 - ID_B1 SINE B4 -10 214 91 3 827 22 0 0 0 chr5 31729427 31729449 -120807810 + AT_rich Low_complexity Low_complexity 1 22 0 3 827 474 275 70 28 chr5 31729519 31729661 -120807598 + B1F1 SINE Alu 1 148 -1 3 827 450 0 0 0 chr5 31729662 31729712 -120807547 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 827 25 90 0 0 chr5 31729750 31729817 -120807442 + AT_rich Low_complexity Low_complexity 1 67 0 3 827 859 237 69 124 chr5 31729854 31730216 -120807043 + MTE2b LTR MaLR 36 377 -2 3 827 1035 195 27 67 chr5 31730282 31730314 -120806945 + B3 SINE B2 1 32 -184 3 827 3812 70 12 8 chr5 31730314 31730815 -120806444 + L1Md_F2 LINE L1 6068 6570 -12 3 827 1035 195 27 67 chr5 31730815 31731007 -120806252 + B3 SINE B2 33 216 0 3 827 1153 81 0 0 chr5 31731027 31731175 -120806084 + B1_Mus1 SINE Alu 1 148 0 3 827 29 0 0 0 chr5 31731175 31731204 -120806055 + AT_rich Low_complexity Low_complexity 1 29 0 4 827 710 204 14 0 chr5 31731219 31731361 -120805898 + B1_Mus1 SINE Alu 4 147 -1 4 827 289 253 135 39 chr5 31731480 31731636 -120805623 + L1MA8 LINE L1 6110 6280 -11 4 827 992 66 80 14 chr5 31731669 31731807 -120805452 - B1_Mus1 SINE Alu 0 148 2 4 827 887 207 32 5 chr5 31731817 31732006 -120805253 - B3 SINE B2 -10 206 13 4 827 255 278 13 65 chr5 31731943 31732020 -120805239 - ID4_ SINE ID -9 74 2 4 827 364 338 0 44 chr5 31732217 31732353 -120804906 - MTE2a LTR MaLR -230 149 20 4 827 350 310 54 54 chr5 31732443 31732472 -120804787 + ID_B1 SINE B4 50 216 -8 4 827 447 314 22 7 chr5 31732472 31732610 -120804649 + B1F SINE Alu 2 141 -8 4 827 861 260 13 44 chr5 31732756 31732985 -120804274 - B4 SINE B4 -69 223 2 4 827 282 200 103 21 chr5 31733207 31733304 -120803955 + L1MEg LINE L1 1453 1557 -4685 4 827 574 252 83 9 chr5 31734095 31734323 -120802936 + L1MA4A LINE L1 5681 5925 -378 4 827 3582 72 146 30 chr5 31734589 31735115 -120802144 - LTRIS_Mus LTR ERV1 0 587 1 4 827 251 235 112 47 chr5 31735128 31735235 -120802024 + L1MEg LINE L1 3876 3989 -2157 4 827 299 189 180 0 chr5 31735329 31735440 -120801819 + L1M4 LINE L1 4451 4581 -1559 4 827 2147 170 87 34 chr5 31735465 31735959 -120801300 + RMER16 LTR ERVK 14 533 0 4 827 691 245 127 49 chr5 31735959 31736086 -120801173 + L1M4 LINE L1 4593 4720 -1426 4 827 1314 93 11 16 chr5 31736086 31736271 -120800988 + B2_Mm1t SINE B2 1 184 -9 4 827 691 245 127 49 chr5 31736271 31736420 -120800839 + L1M4 LINE L1 4721 4899 -1247 4 827 198 0 0 0 chr5 31736420 31736442 -120800817 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 4 827 691 245 127 49 chr5 31736442 31736533 -120800726 + L1M4 LINE L1 4900 4990 -1156 4 827 3384 173 55 21 chr5 31736534 31737215 -120800044 + L1Md_F2 LINE L1 152 1053 -5563 4 827 3478 30 4 128 chr5 31737215 31737713 -120799546 - RLTR10C LTR ERVK 0 436 1 4 827 33357 73 10 15 chr5 31737713 31742461 -120794798 + L1Md_F2 LINE L1 898 5586 -297 4 827 7965 44 16 0 chr5 31742462 31743440 -120793819 + L1Md_F2 LINE L1 5588 6581 -1 4 827 207 0 0 0 chr5 31754400 31754423 -120782836 + (A)n Simple_repeat Simple_repeat 1 23 0 4 827 202 55 0 53 chr5 31755225 31755263 -120781996 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 827 757 270 0 0 chr5 31755629 31755814 -120781445 + MER3 DNA MER1_type 25 209 0 4 827 374 213 146 8 chr5 31756259 31756382 -120780877 - B1F2 SINE Alu -3 146 7 4 827 569 208 23 8 chr5 31756391 31756522 -120780737 - B1F SINE Alu -5 144 12 4 827 1388 85 37 0 chr5 31756806 31756994 -120780265 + B2_Mm2 SINE B2 1 195 0 4 827 690 230 102 0 chr5 31757605 31757792 -120779467 - B3 SINE B2 -6 210 5 4 827 727 161 13 19 chr5 31758007 31758165 -120779094 - URR1B DNA MER1_type -4 221 65 4 827 1106 150 22 11 chr5 31758217 31758399 -120778860 + B2_Mm2 SINE B2 3 186 -9 4 827 1383 85 27 0 chr5 31758409 31758597 -120778662 + B2_Mm1t SINE B2 1 193 0 4 827 1258 118 11 0 chr5 31758622 31758808 -120778451 - B2_Mm1t SINE B2 -4 189 2 4 827 216 97 0 0 chr5 31759178 31759209 -120778050 + (T)n Simple_repeat Simple_repeat 1 31 0 4 827 869 110 0 88 chr5 31759522 31759681 -120777578 - B1_Mur4 SINE Alu 0 150 6 4 827 891 221 24 24 chr5 31759718 31759927 -120777332 - B3 SINE B2 -7 209 1 4 827 497 255 44 74 chr5 31759956 31760159 -120777100 - B3A SINE B2 0 198 2 4 827 341 250 180 61 chr5 31760160 31760295 -120776964 - L1ME1 LINE L1 -142 6037 5894 4 827 1170 68 7 0 chr5 31760295 31760441 -120776818 + B1_Mus1 SINE Alu 2 148 0 4 827 1315 91 5 11 chr5 31760447 31760635 -120776624 + B2_Mm1a SINE B2 1 187 -6 4 827 341 250 180 61 chr5 31760635 31760854 -120776405 - L1ME1 LINE L1 -293 5886 5635 4 827 272 245 35 26 chr5 31760904 31761017 -120776242 - Lx7 LINE L1 0 7696 7583 4 827 5546 135 37 12 chr5 31761019 31761822 -120775437 - L1_Mur3 LINE L1 -1558 4322 3502 4 827 1231 34 0 0 chr5 31761822 31761969 -120775290 + B1_Mus2 SINE Alu 1 147 0 4 827 5546 135 37 12 chr5 31761969 31762128 -120775131 - L1_Mur3 LINE L1 -2379 3501 3336 4 827 704 150 15 22 chr5 31762142 31762278 -120774981 - B1_Mus1 SINE Alu -8 140 6 4 827 1301 48 0 0 chr5 31762315 31762483 -120774776 - B2_Mm2 SINE B2 -26 169 2 4 827 1269 179 72 44 chr5 31762505 31762826 -120774433 - L1_Mur3 LINE L1 -7102 626 297 4 827 858 210 67 24 chr5 31762890 31763143 -120774116 - B4A SINE B4 -9 283 11 4 827 1225 28 14 0 chr5 31763239 31763384 -120773875 + B1_Mm SINE Alu 1 147 0 4 827 198 0 0 0 chr5 31763384 31763406 -120773853 + (A)n Simple_repeat Simple_repeat 1 22 0 4 827 280 167 0 0 chr5 31763463 31763511 -120773748 - B1_Mur1 SINE Alu -41 108 61 4 827 687 202 8 12 chr5 31763618 31763795 -120773464 + B2_Mm2 SINE B2 5 179 -14 4 827 736 124 31 0 chr5 31764127 31764256 -120773003 - B1_Mur4 SINE Alu 0 150 18 4 827 792 309 99 41 chr5 31764272 31764836 -120772423 - L1MEf LINE L1 -3311 2835 2239 4 827 715 213 44 39 chr5 31764839 31765020 -120772239 - B3A SINE B2 -16 182 1 4 827 2496 86 9 0 chr5 31765120 31765444 -120771815 - ORR1A2 LTR MaLR 0 327 1 4 827 411 179 67 25 chr5 31765609 31765733 -120771526 + B3A SINE B2 3 124 -71 4 827 257 276 37 82 chr5 31765736 31765870 -120771389 - L1MEf LINE L1 -4361 1881 1754 4 827 482 212 6 34 chr5 31765987 31766163 -120771096 + CT-rich Low_complexity Low_complexity 1 171 0 4 827 266 383 0 0 chr5 31766166 31766273 -120770986 - PB1D7 SINE Alu -13 107 1 4 827 434 209 99 0 chr5 31766326 31766417 -120770842 + RSINE1 SINE B4 3 102 -63 4 827 531 218 70 154 chr5 31766424 31766625 -120770634 - MTE2b LTR MaLR -193 186 3 4 827 1030 246 241 66 chr5 31766627 31766685 -120770574 - MTE2b-int LTR MaLR 0 1580 1539 4 827 727 253 25 25 chr5 31766685 31766847 -120770412 - RSINE1 SINE B4 -2 163 2 4 827 1030 246 241 66 chr5 31766847 31767332 -120769927 - MTE2b-int LTR MaLR -42 1538 942 4 827 387 0 0 0 chr5 31767633 31767676 -120769583 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 827 1064 50 0 0 chr5 31768269 31768410 -120768849 + B1_Mus1 SINE Alu 8 148 0 4 827 193 96 37 37 chr5 31768410 31768464 -120768795 + A-rich Low_complexity Low_complexity 4 57 0 4 827 524 218 40 34 chr5 31770237 31770413 -120766846 - ORR1E LTR MaLR -182 177 1 4 827 212 260 0 0 chr5 31770654 31770704 -120766555 + (CATA)n Simple_repeat Simple_repeat 2 51 0 4 827 518 236 156 30 chr5 31770739 31770956 -120766303 + L1_Rod LINE L1 5434 5725 -575 4 827 213 196 0 0 chr5 31770958 31771004 -120766255 + CT-rich Low_complexity Low_complexity 3 48 0 4 827 355 248 167 10 chr5 31771004 31771106 -120766153 - B1F SINE Alu -18 131 14 4 827 461 268 0 9 chr5 31771132 31771245 -120766014 - ID_B1 SINE B4 -26 198 87 4 827 295 228 36 58 chr5 31771353 31771448 -120765811 + B1F1 SINE Alu 15 108 -9 4 827 370 218 6 0 chr5 31771674 31771768 -120765491 + RMER1C Other Other 1270 1342 0 4 827 1214 159 171 34 chr5 31773613 31773906 -120763353 - ORR1D1 LTR MaLR -41 333 1 4 827 519 305 141 12 chr5 31773952 31774201 -120763058 - B4A SINE B4 -11 281 1 4 827 918 231 34 5 chr5 31774211 31774415 -120762844 - B3 SINE B2 -6 210 1 4 827 189 107 0 0 chr5 31774586 31774614 -120762645 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 827 761 288 17 22 chr5 31774615 31774846 -120762413 - B4 SINE B4 -8 284 55 4 827 280 308 54 29 chr5 31774876 31775053 -120762206 - B4A SINE B4 -1 291 107 4 827 365 244 5 113 chr5 31775394 31775550 -120761709 + B3A SINE B2 71 212 -4 4 827 183 80 0 0 chr5 31775577 31775602 -120761657 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 827 802 128 0 0 chr5 31775610 31775727 -120761532 - B1_Mur3 SINE Alu -28 121 5 4 827 394 179 62 12 chr5 31776358 31776461 -120760798 - ORR1D2 LTR MaLR -15 404 283 4 827 1666 117 69 20 chr5 31776455 31776760 -120760499 - ORR1A4 LTR MaLR -8 321 2 4 827 1542 177 35 24 chr5 31776851 31777207 -120760052 + ORR1D1 LTR MaLR 3 346 -28 4 827 1120 87 111 6 chr5 31777432 31777594 -120759665 + B2_Mm2 SINE B2 2 180 -15 4 827 468 240 0 0 chr5 31777605 31777726 -120759533 + (TG)n Simple_repeat Simple_repeat 2 122 0 4 827 487 284 29 33 chr5 31779962 31780148 -120757111 - RLTR16 LTR ERVK -219 309 1 4 827 929 200 83 0 chr5 31780165 31780345 -120756914 - B3 SINE B2 -20 196 2 4 827 355 310 0 0 chr5 31780415 31780502 -120756757 + ID_B1 SINE B4 73 159 -65 4 827 234 289 84 84 chr5 31780940 31781095 -120756164 - YREP_Mm Unknown Unknown -1472 340 186 4 827 660 216 16 0 chr5 31780972 31781097 -120756162 + ID_B1 SINE B4 91 217 -7 4 827 607 129 15 22 chr5 31781307 31781442 -120755817 + CT-rich Low_complexity Low_complexity 1 134 0 4 827 711 196 101 25 chr5 31781805 31782004 -120755255 - B3 SINE B2 -1 215 2 4 827 411 248 34 76 chr5 31782007 31782125 -120755134 - PB1D10 SINE Alu -1 116 4 4 827 186 150 0 0 chr5 31782400 31782440 -120754819 + (CAG)n Simple_repeat Simple_repeat 2 41 0 4 827 393 39 0 0 chr5 31784453 31784504 -120752755 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 827 253 231 15 0 chr5 31784505 31784570 -120752689 + L1M5 LINE L1 5548 5613 -560 4 827 1514 47 10 25 chr5 31784577 31784773 -120752486 + B2_Mm2 SINE B2 2 194 -1 4 827 1633 222 60 15 chr5 31785443 31785840 -120751419 - MTD LTR MaLR -2 417 3 4 827 465 226 0 0 chr5 31785844 31785959 -120751300 + (TATATG)n Simple_repeat Simple_repeat 6 120 0 4 827 870 189 0 0 chr5 31785960 31786140 -120751119 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 827 285 236 0 0 chr5 31786327 31786382 -120750877 - RSINE1 SINE B4 0 165 111 4 827 2302 80 70 0 chr5 31786434 31786736 -120750523 - ORR1A2 LTR MaLR -4 323 1 4 827 213 362 0 59 chr5 31786737 31786822 -120750437 - RSINE1 SINE B4 -57 108 29 4 827 354 159 63 0 chr5 31786997 31787060 -120750199 - B3A SINE B2 -109 89 23 5 827 848 246 49 0 chr5 31787083 31787286 -120749973 - ID_B1 SINE B4 -11 213 1 5 827 366 85 0 0 chr5 31787313 31787372 -120749887 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 827 984 125 0 20 chr5 31787483 31787630 -120749629 - B1_Mur3 SINE Alu -5 144 1 5 827 361 216 83 124 chr5 31787630 31787674 -120749585 - MT2B2 LTR ERVL -431 153 117 5 827 553 286 62 67 chr5 31788744 31788954 -120748305 + B4A SINE B4 1 209 -83 5 827 1282 229 82 49 chr5 31788954 31789251 -120748008 - MTD LTR MaLR 0 419 104 5 827 1419 80 16 0 chr5 31789251 31789439 -120747820 + B2_Mm2 SINE B2 1 191 -4 5 827 1282 229 82 49 chr5 31789439 31789546 -120747713 - MTD LTR MaLR -316 103 2 5 827 1204 48 7 0 chr5 31790937 31791083 -120746176 + B1_Mm SINE Alu 1 147 0 5 827 232 269 0 0 chr5 31791263 31791315 -120745944 + RSINE1 SINE B4 3 54 -111 5 827 2704 65 84 10 chr5 31791315 31791707 -120745552 - BGLII LTR ERVK 0 421 1 5 827 652 224 7 20 chr5 31792098 31792248 -120745011 - B1F SINE Alu -1 148 1 5 827 233 286 82 45 chr5 31792320 31792430 -120744829 + PB1 SINE Alu 7 120 -7 5 827 260 301 0 14 chr5 31792437 31792511 -120744748 + BC1_Mm scRNA scRNA 8 80 -72 5 827 1176 68 0 0 chr5 31792829 31792975 -120744284 + B1_Mus2 SINE Alu 2 147 0 5 827 1180 68 0 0 chr5 31793608 31793754 -120743505 + B1_Mus1 SINE Alu 2 147 -1 5 827 612 73 0 0 chr5 31793754 31793836 -120743423 + (GA)n Simple_repeat Simple_repeat 2 83 0 5 827 394 168 18 1 chr5 31794272 31794363 -120742896 - ORR1C2 LTR MaLR -21 398 259 5 827 1555 149 155 3 chr5 31794357 31794660 -120742599 - ORR1C2 LTR MaLR -11 373 25 5 827 362 264 98 23 chr5 31794776 31794908 -120742351 - MTC LTR MaLR -279 142 1 5 827 323 255 5 0 chr5 31795210 31795282 -120741977 - PB1D10 SINE Alu -27 93 19 5 827 201 74 0 0 chr5 31795466 31795493 -120741766 + (TCC)n Simple_repeat Simple_repeat 2 28 0 5 827 420 253 32 0 chr5 31795582 31795677 -120741582 + RSINE1 SINE B4 5 102 -63 5 827 1050 245 5 0 chr5 31795807 31796011 -120741248 - B4A SINE B4 -85 207 3 5 827 1623 47 0 0 chr5 31796088 31796280 -120740979 + B2_Mm1a SINE B2 1 192 -1 5 827 279 345 12 0 chr5 31797580 31797664 -120739595 - L2b LINE L2 -51 3324 3240 5 827 272 294 82 0 chr5 31798395 31798480 -120738779 + PB1D10 SINE Alu 24 115 -2 5 827 448 194 64 11 chr5 31798653 31798747 -120738512 + PB1D9 SINE Alu 2 100 -20 5 827 1115 191 34 0 chr5 31798878 31799087 -120738172 - B3 SINE B2 0 216 1 5 827 826 176 21 0 chr5 31799305 31799447 -120737812 - B1_Mur3 SINE Alu 0 149 5 5 827 268 244 99 50 chr5 31799542 31799663 -120737596 + B1F1 SINE Alu 11 137 -12 5 827 1465 53 5 16 chr5 31799876 31800067 -120737192 + B2_Mm1a SINE B2 2 190 -3 5 827 442 240 20 10 chr5 31800347 31800448 -120736811 - PB1D9 SINE Alu -17 103 2 5 827 272 358 10 10 chr5 31800366 31800462 -120736797 - B4 SINE B4 -124 168 73 5 827 1174 54 0 39 chr5 31801125 31801278 -120735981 - B1_Mm SINE Alu 0 147 1 5 827 235 182 0 43 chr5 31801915 31801961 -120735298 - MTEa LTR MaLR -76 303 260 5 827 551 241 55 34 chr5 31802090 31802236 -120735023 + RSINE1 SINE B4 14 162 -3 5 827 397 249 126 75 chr5 31802712 31802886 -120734373 - L1MB8 LINE L1 -7 6171 5989 5 827 201 200 30 30 chr5 31803639 31803673 -120733586 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 5 827 852 201 0 0 chr5 31803673 31803822 -120733437 - B1_Mur4 SINE Alu -1 149 1 5 827 201 200 30 30 chr5 31803822 31803839 -120733420 + (TTTA)n Simple_repeat Simple_repeat 1 16 0 5 827 1483 73 10 0 chr5 31803839 31804031 -120733228 - B2_Mm2 SINE B2 -1 194 1 5 827 201 200 30 30 chr5 31804031 31804045 -120733214 + (TTTA)n Simple_repeat Simple_repeat 3 16 0 5 827 940 234 33 23 chr5 31804054 31804268 -120732991 - B3 SINE B2 0 216 1 5 827 347 247 0 45 chr5 31805172 31805261 -120731998 + B1F SINE Alu 41 125 -24 5 827 184 330 27 72 chr5 31805272 31805383 -120731876 + MIR SINE MIR 151 256 -6 5 827 416 241 26 53 chr5 31805593 31805707 -120731552 - PB1D10 SINE Alu -6 111 1 5 827 301 212 24 59 chr5 31806582 31806667 -120730592 + ID4 SINE ID 2 83 0 5 827 911 60 101 29 chr5 31806977 31807115 -120730144 - B1_Mus1 SINE Alu 0 148 1 5 827 195 42 0 0 chr5 31808122 31808146 -120729113 + (T)n Simple_repeat Simple_repeat 1 24 0 5 827 1204 61 0 13 chr5 31808146 31808295 -120728964 - B1_Mus2 SINE Alu 0 147 1 5 827 420 258 83 8 chr5 31808739 31808860 -120728399 + ID_B1 SINE B4 87 216 -8 5 827 244 78 0 86 chr5 31808870 31808940 -120728319 + (CCCTAA)n Simple_repeat Simple_repeat 5 68 0 5 827 228 284 19 25 chr5 31809050 31809065 -120728194 - ID_B1 SINE B4 -72 152 119 5 827 245 184 82 0 chr5 31809065 31809114 -120728145 - B1F SINE Alu -90 59 7 5 827 228 284 19 25 chr5 31809114 31809131 -120728128 - ID_B1 SINE B4 -72 118 74 5 827 375 282 309 5 chr5 31809505 31809676 -120727583 + ID_B1 SINE B4 1 224 0 5 827 506 269 67 0 chr5 31809713 31809832 -120727427 - RSINE1 SINE B4 -36 129 3 5 827 261 0 0 0 chr5 31810156 31810185 -120727074 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 5 827 226 274 79 99 chr5 31810202 31810494 -120726765 - L1MC4 LINE L1 -16 8026 7741 5 827 1086 230 0 0 chr5 31811189 31811398 -120725861 + B3 SINE B2 1 209 -7 5 827 1161 68 7 0 chr5 31811401 31811547 -120725712 + B1_Mus2 SINE Alu 1 147 0 5 827 249 259 57 88 chr5 31811955 31812185 -120725074 - ORR1E LTR MaLR -12 347 141 5 827 216 238 118 12 chr5 31812324 31812409 -120724850 + MER5A DNA MER1_type 91 184 -5 5 827 1048 187 64 0 chr5 31812547 31812750 -120724509 - B3 SINE B2 0 216 1 5 827 478 244 17 34 chr5 31812937 31813056 -120724203 + PB1D10 SINE Alu 1 117 0 5 827 385 165 62 12 chr5 31813061 31813141 -120724118 - HAL1-3A_ME LINE L1 -796 2062 1979 5 827 451 160 122 65 chr5 31814422 31814529 -120722730 + PB1D9 SINE Alu 2 114 -6 5 827 1210 62 0 0 chr5 31814542 31814688 -120722571 + B1_Mus2 SINE Alu 2 147 0 5 827 2103 169 223 54 chr5 31814920 31815440 -120721819 + RMER20B LTR ERVK 1 608 -19 5 827 785 150 510 24 chr5 31815519 31815765 -120721494 - ORR1B2 LTR MaLR 0 367 1 5 827 1221 70 99 6 chr5 31815809 31815981 -120721278 + B2_Mm2 SINE B2 1 188 -7 5 827 524 224 12 101 chr5 31816094 31816263 -120720996 + RSINE1 SINE B4 8 161 -4 5 827 399 291 160 42 chr5 31816388 31816725 -120720534 + Lx8 LINE L1 6815 7191 -282 5 827 243 0 0 0 chr5 31816970 31816997 -120720262 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 827 421 213 138 0 chr5 31817002 31817096 -120720163 - RSINE1 SINE B4 -57 108 2 5 827 1189 61 0 7 chr5 31817275 31817423 -120719836 + B1_Mus2 SINE Alu 1 147 0 5 827 186 43 0 0 chr5 31818530 31818553 -120718706 + (A)n Simple_repeat Simple_repeat 1 23 0 5 827 417 188 69 23 chr5 31818736 31818823 -120718436 - B4A SINE B4 -167 125 35 5 827 364 43 0 0 chr5 31818860 31818907 -120718352 - B1_Mm SINE Alu 0 147 101 5 827 2964 184 95 30 chr5 31819350 31819983 -120717276 + RMER13A LTR ERVK 1 674 -186 5 827 277 171 211 14 chr5 31820008 31820079 -120717180 + RMER13A LTR ERVK 824 908 0 5 827 1536 58 5 0 chr5 31820135 31820325 -120716934 + B2_Mm1t SINE B2 2 192 -1 5 827 636 252 236 43 chr5 31821043 31821276 -120715983 - B4 SINE B4 -1 291 14 5 827 315 162 93 13 chr5 31821310 31821385 -120715874 + ID4_ SINE ID 2 82 -1 5 827 236 279 51 0 chr5 31821578 31821657 -120715602 + PB1D10 SINE Alu 24 106 -11 5 827 297 279 179 32 chr5 31821794 31822000 -120715259 + L2a LINE L2 3178 3418 -8 5 827 1241 75 0 12 chr5 31822010 31822173 -120715086 + B2_Mm2 SINE B2 1 161 -34 5 827 315 0 0 0 chr5 31822173 31822208 -120715051 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 5 827 387 60 0 0 chr5 31822208 31822258 -120715001 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 827 221 271 86 0 chr5 31823367 31823437 -120713822 - ID4_ SINE ID -5 78 3 5 827 769 234 95 141 chr5 31823559 31823863 -120713396 - B4 SINE B4 0 292 3 5 827 773 89 60 68 chr5 31823863 31823990 -120713269 - BC1_Mm scRNA scRNA -20 132 7 5 827 880 234 68 17 chr5 31823961 31824194 -120713065 - B4 SINE B4 -53 239 1 5 827 1216 68 0 0 chr5 31824219 31824366 -120712893 + B1_Mus1 SINE Alu 2 148 0 5 827 185 250 28 0 chr5 31824605 31824641 -120712618 + L2b LINE L2 3328 3364 -11 5 827 956 149 0 0 chr5 31824667 31824808 -120712451 + B1_Mur3 SINE Alu 9 149 0 5 827 201 39 0 0 chr5 31824812 31824838 -120712421 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 827 908 140 28 0 chr5 31825941 31826084 -120711175 + B1_Mus2 SINE Alu 1 147 0 5 827 969 241 107 31 chr5 31826214 31826325 -120710934 - B4 SINE B4 -7 285 163 5 827 2384 177 49 12 chr5 31826325 31826417 -120710842 - RLTR16 LTR ERVK 0 505 413 5 827 417 123 0 0 chr5 31826417 31826482 -120710777 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 827 2384 177 49 12 chr5 31826482 31826876 -120710383 - RLTR16 LTR ERVK -93 412 2 5 827 969 241 107 31 chr5 31826876 31827025 -120710234 - B4 SINE B4 -130 162 6 5 827 1360 148 9 26 chr5 31827078 31827307 -120709952 + URR1A DNA MER1_type 1 225 -1 5 827 234 236 0 0 chr5 31827355 31827410 -120709849 + CT-rich Low_complexity Low_complexity 1 55 0 6 827 225 154 0 0 chr5 31827789 31827828 -120709431 + T-rich Low_complexity Low_complexity 1 39 0 6 827 753 230 0 7 chr5 31827849 31827985 -120709274 - RSINE1 SINE B4 -29 136 2 6 827 484 270 9 0 chr5 31828028 31828139 -120709120 - B1_Mur3 SINE Alu -8 141 30 6 827 720 230 90 14 chr5 31828110 31828308 -120708951 - B3A SINE B2 0 216 1 6 827 1214 48 0 0 chr5 31830100 31830246 -120707013 - B1_Mus2 SINE Alu 0 147 2 6 827 189 0 0 0 chr5 31830807 31830828 -120706431 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 827 267 31 0 0 chr5 31830828 31830859 -120706400 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 827 728 192 77 22 chr5 31831049 31831230 -120706029 + B2_Mm2 SINE B2 2 192 -3 6 827 720 224 0 22 chr5 31831246 31831383 -120705876 + B1_Mur3 SINE Alu 6 139 -10 6 827 397 274 108 45 chr5 31831674 31831850 -120705409 + MER33 DNA MER1_type 1 187 -137 6 827 585 228 8 23 chr5 31831938 31832068 -120705191 - RSINE1 SINE B4 -12 153 26 6 827 622 152 16 41 chr5 31832100 31832223 -120705036 + PB1D9 SINE Alu 1 120 0 6 827 1202 47 0 20 chr5 31832468 31832619 -120704640 - B1_Mus1 SINE Alu 0 148 1 6 827 235 250 50 0 chr5 31832844 31832904 -120704355 - PB1 SINE Alu -59 68 6 6 827 813 267 64 11 chr5 31833568 31833833 -120703426 - B4 SINE B4 -12 280 2 6 827 180 77 0 0 chr5 31833958 31833984 -120703275 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 827 336 208 15 2 chr5 31834041 31834114 -120703145 - ID4 SINE ID -10 73 1 6 827 522 124 99 54 chr5 31835172 31835283 -120701976 + PB1D9 SINE Alu 5 120 0 6 827 683 121 200 8 chr5 31835463 31835588 -120701671 - B1_Mur3 SINE Alu 0 149 1 6 827 228 277 148 7 chr5 31835636 31835785 -120701474 - L1MB4 LINE L1 -60 6120 5951 6 827 295 315 0 0 chr5 31835803 31835876 -120701383 - B4A SINE B4 -15 277 205 6 827 241 320 69 10 chr5 31835945 31836046 -120701213 - B4A SINE B4 -175 117 11 6 827 392 97 16 0 chr5 31836084 31836146 -120701113 + (TCC)n Simple_repeat Simple_repeat 1 63 0 6 827 496 257 159 11 chr5 31836146 31836335 -120700924 - ID_B1 SINE B4 -7 217 1 6 827 252 143 0 0 chr5 31837356 31837398 -120699861 + (A)n Simple_repeat Simple_repeat 1 42 0 6 827 1239 81 36 36 chr5 31837401 31837593 -120699666 + B2_Mm2 SINE B2 1 192 -3 6 827 237 65 0 0 chr5 31837610 31837641 -120699618 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 827 966 190 55 30 chr5 31837717 31837918 -120699341 - B3 SINE B2 -4 212 7 6 827 921 72 129 0 chr5 31837997 31838136 -120699123 + B2_Mm2 SINE B2 2 158 -37 6 827 219 36 0 0 chr5 31838137 31838165 -120699094 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 6 827 248 225 28 14 chr5 31838218 31838290 -120698969 + ID_B1 SINE B4 146 218 -6 6 827 303 246 8 42 chr5 31838726 31838845 -120698414 - ID_B1 SINE B4 -9 215 101 6 827 328 278 102 16 chr5 31838828 31838956 -120698303 - RSINE1 SINE B4 -23 142 4 6 827 278 121 134 15 chr5 31838990 31839057 -120698202 - Lx8 LINE L1 0 7473 7399 6 827 1237 28 7 0 chr5 31839208 31839353 -120697906 - B1_Mus1 SINE Alu 0 148 3 6 827 1040 118 23 17 chr5 31839469 31839641 -120697618 + B2_Mm2 SINE B2 4 176 -19 6 827 25 51 0 0 chr5 31839724 31839763 -120697496 + AT_rich Low_complexity Low_complexity 1 39 0 6 827 1239 126 55 0 chr5 31839824 31840023 -120697236 - Lx3B LINE L1 -2 6971 6762 6 827 473 216 115 18 chr5 31840135 31840248 -120697011 + ID_B1 SINE B4 75 198 -26 6 827 228 135 0 0 chr5 31840257 31840294 -120696965 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 6 827 397 154 0 37 chr5 31840297 31840378 -120696881 + PB1D9 SINE Alu 43 120 0 6 827 285 225 164 27 chr5 31840435 31840508 -120696751 + ID4_ SINE ID 1 83 0 6 827 781 189 35 0 chr5 31840545 31840688 -120696571 - B1F2 SINE Alu 0 149 2 6 827 22 0 0 0 chr5 31840722 31840744 -120696515 + AT_rich Low_complexity Low_complexity 1 22 0 6 827 21 0 0 0 chr5 31840792 31840813 -120696446 + AT_rich Low_complexity Low_complexity 1 21 0 6 827 321 197 0 0 chr5 31840957 31841023 -120696236 + (TA)n Simple_repeat Simple_repeat 1 66 0 6 827 231 306 122 61 chr5 31841036 31841151 -120696108 - LTR16A1 LTR ERVL 0 456 335 6 827 458 248 39 8 chr5 31841635 31841765 -120695494 + B1F1 SINE Alu 3 136 -13 6 827 427 247 12 85 chr5 31841874 31842038 -120695221 - MER3 DNA MER1_type -56 153 2 6 827 849 154 35 0 chr5 31842139 31842282 -120694977 + B1_Mur4 SINE Alu 2 149 -1 6 827 530 217 24 48 chr5 31842522 31842687 -120694572 - RSINE1 SINE B4 -2 163 3 6 827 427 227 175 32 chr5 31843006 31843252 -120694007 + B4A SINE B4 2 282 -10 6 827 533 310 83 20 chr5 31843638 31843696 -120693563 - Lx8 LINE L1 -54 7419 7344 6 827 1357 85 31 16 chr5 31843696 31843888 -120693371 - B2_Mm2 SINE B2 0 195 1 6 827 768 131 135 23 chr5 31843890 31844023 -120693236 - B1_Mur4 SINE Alu -1 149 2 6 827 533 310 83 20 chr5 31844023 31844214 -120693045 - Lx8 LINE L1 -130 7343 7151 6 827 368 242 21 0 chr5 31844228 31844323 -120692936 - MTC LTR MaLR -324 97 1 6 827 347 266 219 57 chr5 31844365 31844644 -120692615 - MLT1B LTR MaLR -64 326 3 6 827 228 313 96 0 chr5 31844654 31844737 -120692522 + PB1D7 SINE Alu 10 100 -20 6 827 1485 73 0 20 chr5 31844901 31845098 -120692161 - B2_Mm2 SINE B2 0 195 3 6 827 957 134 0 0 chr5 31845129 31845263 -120691996 + B1_Mus1 SINE Alu 2 135 -13 6 827 30 45 0 43 chr5 31845306 31845376 -120691883 + AT_rich Low_complexity Low_complexity 1 67 0 6 827 646 222 16 0 chr5 31845394 31845520 -120691739 + B1F2 SINE Alu 14 141 -8 6 827 321 118 0 0 chr5 31846108 31846159 -120691100 + (GGA)n Simple_repeat Simple_repeat 2 52 0 6 827 1186 54 0 20 chr5 31846363 31846513 -120690746 + B1_Mus1 SINE Alu 2 148 0 6 827 1046 313 48 29 chr5 31846577 31847054 -120690205 - Lx9 LINE L1 -822 6822 6337 6 827 916 138 236 0 chr5 31847098 31847272 -120689987 + B3 SINE B2 1 215 -1 6 827 357 242 145 53 chr5 31847528 31847659 -120689600 - RSINE1 SINE B4 -22 143 1 6 827 27 0 0 0 chr5 31847674 31847701 -120689558 + AT_rich Low_complexity Low_complexity 1 27 0 6 827 26 82 0 0 chr5 31847755 31847816 -120689443 + AT_rich Low_complexity Low_complexity 1 61 0 6 827 322 305 56 43 chr5 31847823 31847984 -120689275 - RSINE1 SINE B4 0 165 3 6 827 1439 67 5 20 chr5 31848153 31848350 -120688909 - B2_Mm2 SINE B2 0 195 2 6 827 1321 66 77 6 chr5 31849061 31849244 -120688015 - L1_Mus1 LINE L1 0 6567 6372 6 827 412 213 68 115 chr5 31849265 31849302 -120687957 - B2_Mm2 SINE B2 -13 182 154 6 827 318 80 0 0 chr5 31849302 31849352 -120687907 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 6 827 456 213 68 115 chr5 31849352 31849505 -120687754 - B3A SINE B2 -42 153 1 6 827 650 211 23 62 chr5 31849509 31849686 -120687573 - B3A SINE B2 -2 196 27 6 827 765 89 16 8 chr5 31849694 31849819 -120687440 + (TTC)n Simple_repeat Simple_repeat 1 126 0 6 827 924 58 46 23 chr5 31849824 31849999 -120687260 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 6 827 559 178 10 46 chr5 31850002 31850397 -120686862 + CT-rich Low_complexity Low_complexity 1 380 0 6 103 1313 108 16 11 chr5 31850398 31850586 -120686673 - B2_Mm2 SINE B2 -6 189 1 6 828 427 224 232 17 chr5 31850628 31850805 -120686454 - B3 SINE B2 0 216 2 6 828 670 316 120 8 chr5 31851460 31851817 -120685442 - MER68 LTR ERVL -36 527 131 6 828 312 27 0 0 chr5 31851940 31851977 -120685282 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 828 529 271 39 32 chr5 31852272 31852428 -120684831 + RSINE1 SINE B4 9 165 0 6 828 263 218 63 24 chr5 31852438 31852456 -120684803 + ORR1B1-int LTR MaLR 623 645 -864 6 828 748 161 23 178 chr5 31852456 31852630 -120684629 + B1_Mur3 SINE Alu 1 147 0 6 828 276 208 12 111 chr5 31852672 31852753 -120684506 + MT2B LTR ERVL 168 240 -361 6 828 646 227 16 0 chr5 31852682 31852810 -120684449 + B1_Mur1 SINE Alu 15 144 -5 6 828 571 226 63 91 chr5 31852810 31852857 -120684402 + B4A SINE B4 100 269 -23 6 828 243 88 0 0 chr5 31853186 31853220 -120684039 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 828 692 252 0 0 chr5 31853224 31853363 -120683896 - B3 SINE B2 -51 165 27 6 828 1171 48 0 7 chr5 31853378 31853526 -120683733 - B1_Mus2 SINE Alu 0 147 1 6 828 229 62 0 0 chr5 31853526 31853558 -120683701 - B3A SINE B2 -158 40 9 6 828 1050 202 10 5 chr5 31853735 31853929 -120683330 + ID_B1 SINE B4 23 217 -7 6 828 225 204 41 0 chr5 31853887 31853936 -120683323 + PB1D10 SINE Alu 67 117 0 6 828 21 36 0 0 chr5 31853936 31853964 -120683295 + AT_rich Low_complexity Low_complexity 1 28 0 6 828 2466 85 19 0 chr5 31853997 31854316 -120682943 - ORR1A2 LTR MaLR -2 325 1 6 828 264 226 179 50 chr5 31854317 31854457 -120682802 + L1MC5 LINE L1 7619 7776 -185 6 828 240 35 0 0 chr5 31854822 31854851 -120682408 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 828 22 0 0 0 chr5 31855017 31855039 -120682220 + AT_rich Low_complexity Low_complexity 1 22 0 6 828 260 172 6 0 chr5 31855097 31855146 -120682113 + PB1D10 SINE Alu 36 86 -62 6 828 259 246 0 0 chr5 31855245 31855306 -120681953 + Lx8 LINE L1 5826 5886 -1587 6 828 235 159 23 0 chr5 31855885 31855929 -120681330 + PB1D9 SINE Alu 12 56 -64 7 828 192 40 0 0 chr5 31856079 31856104 -120681155 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 7 828 236 197 40 66 chr5 31856865 31856941 -120680318 - RMER5 LTR ERV1 -421 113 40 7 828 212 233 0 0 chr5 31857018 31857061 -120680198 - MamSINE1 SINE tRNA -242 48 6 7 828 521 207 17 35 chr5 31857329 31857444 -120679815 + B1_Mur2 SINE Alu 1 113 -36 7 828 260 70 0 23 chr5 31857570 31857614 -120679645 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 828 917 125 29 0 chr5 31857614 31857750 -120679509 - B1_Mur3 SINE Alu -9 140 1 7 828 21 89 0 0 chr5 31857751 31857807 -120679452 + AT_rich Low_complexity Low_complexity 1 56 0 7 828 186 43 0 0 chr5 31858152 31858175 -120679084 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7 828 281 191 44 0 chr5 31858175 31858243 -120679016 - B1_Mur1 SINE Alu 0 149 79 7 828 742 167 251 38 chr5 31858243 31858666 -120678593 + RLTR20A1 LTR ERVK 1 551 0 7 828 249 115 58 0 chr5 31858666 31858706 -120678553 - B1_Mur4 SINE Alu -65 85 43 7 828 1496 48 37 5 chr5 31858706 31858895 -120678364 - B2_Mm2 SINE B2 0 195 1 7 828 207 0 0 0 chr5 31859520 31859543 -120677716 + (CTG)n Simple_repeat Simple_repeat 2 24 0 7 828 351 113 0 0 chr5 31859541 31859594 -120677665 + (TCC)n Simple_repeat Simple_repeat 3 55 0 7 828 1023 91 0 0 chr5 31859868 31860011 -120677248 + B1_Mus1 SINE Alu 6 148 0 7 828 233 295 77 0 chr5 31860196 31860274 -120676985 - PB1D9 SINE Alu -8 112 29 7 828 1156 69 0 0 chr5 31860344 31860489 -120676770 - B1_Mus2 SINE Alu -2 145 1 7 828 1192 41 7 0 chr5 31861531 31861676 -120675583 + B1_Mm SINE Alu 1 146 -1 7 828 499 234 77 33 chr5 31862353 31862534 -120674725 - MTE2b LTR MaLR -25 354 166 7 828 601 221 97 0 chr5 31862635 31862789 -120674470 - MTE2b LTR MaLR -200 179 11 7 828 429 242 55 24 chr5 31862796 31862923 -120674336 + B4A SINE B4 91 221 -71 7 828 448 224 51 0 chr5 31862924 31863022 -120674237 + RSINE1 SINE B4 3 105 -60 7 828 1715 73 13 13 chr5 31863482 31863719 -120673540 + L1_Mus2 LINE L1 6330 6566 0 7 828 363 289 68 31 chr5 31864141 31864302 -120672957 - B3A SINE B2 -15 183 17 7 828 308 125 167 0 chr5 31865540 31865612 -120671647 + B1F2 SINE Alu 59 142 -7 7 828 283 266 78 60 chr5 31865823 31865939 -120671320 - L1MC1 LINE L1 -20 6313 6196 7 828 374 304 96 75 chr5 31866619 31866818 -120670441 - B4A SINE B4 -89 203 1 7 828 337 254 159 32 chr5 31866913 31867039 -120670220 + ID_B1 SINE B4 75 216 -8 7 828 450 136 52 0 chr5 31868065 31868165 -120669094 - PB1D10 SINE Alu 0 117 23 7 828 295 333 27 27 chr5 31868226 31868374 -120668885 - Charlie19a DNA Charlie -111 275 128 7 828 499 282 105 6 chr5 31869337 31869508 -120667751 + B3A SINE B2 1 188 -10 7 828 582 264 7 14 chr5 31869657 31869799 -120667460 - RSINE1 SINE B4 -23 142 2 7 828 310 357 28 12 chr5 31870061 31870268 -120666991 - MIRb SINE MIR -13 255 38 7 828 263 152 60 15 chr5 31870600 31870667 -120666592 + Tigger14a DNA MER2_type 194 263 -61 7 828 332 128 0 0 chr5 31870952 31870999 -120666260 + B1_Mus1 SINE Alu 9 55 -93 7 828 284 239 55 110 chr5 31871100 31871227 -120666032 + MER102b DNA MER1_type 211 330 -11 7 828 444 194 32 22 chr5 31871609 31871718 -120665541 - MLT1A1 LTR MaLR -26 382 243 7 828 535 87 0 140 chr5 31871836 31871943 -120665316 + B1_Mus2 SINE Alu 1 92 -56 7 828 3585 126 29 23 chr5 31872151 31872712 -120664547 - Lx4B LINE L1 -6 7052 6489 7 828 359 118 0 0 chr5 31872712 31872763 -120664496 - Lx4B LINE L1 -787 6271 6221 7 828 679 145 48 8 chr5 31874604 31874729 -120662530 + B1_Mur1 SINE Alu 19 148 -1 7 828 1112 124 48 16 chr5 31874973 31875161 -120662098 + B2_Mm2 SINE B2 1 194 -1 7 828 542 117 64 0 chr5 31875195 31875289 -120661970 + B1_Mus2 SINE Alu 47 146 -1 7 828 361 296 0 67 chr5 31875300 31875405 -120661854 + B1F2 SINE Alu 1 98 -51 7 828 387 0 0 0 chr5 31875405 31875448 -120661811 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 828 1357 38 0 14 chr5 31875450 31875666 -120661593 + (GAA)n Simple_repeat Simple_repeat 1 212 0 7 828 216 97 0 0 chr5 31875923 31875954 -120661305 + (T)n Simple_repeat Simple_repeat 1 31 0 7 828 1437 53 31 16 chr5 31876676 31876867 -120660392 + B2_Mm2 SINE B2 2 195 0 7 828 532 140 69 10 chr5 31877248 31877349 -120659910 - B1_Mur2 SINE Alu -1 148 42 7 828 324 179 0 0 chr5 31877388 31877466 -120659793 + CT-rich Low_complexity Low_complexity 2 79 0 7 828 798 254 33 5 chr5 31877524 31877734 -120659525 - B3 SINE B2 0 216 1 7 828 314 169 76 33 chr5 31878160 31878252 -120659007 - RMER10A LTR ERVL -25 417 322 7 828 387 0 0 0 chr5 31879081 31879124 -120658135 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 828 406 328 83 74 chr5 31879692 31880028 -120657231 - ORR1E LTR MaLR -18 341 3 7 828 598 221 31 8 chr5 31880245 31880373 -120656886 - ID_B1 SINE B4 -17 207 77 7 828 1151 196 22 35 chr5 31880704 31880932 -120656327 + URR1B DNA MER1_type 1 225 0 7 828 349 234 0 0 chr5 31880971 31881047 -120656212 + B1_Mur1 SINE Alu 33 108 -41 7 828 707 151 76 0 chr5 31881047 31881166 -120656093 + B3 SINE B2 2 129 -87 7 828 467 285 103 0 chr5 31881807 31881972 -120655287 + B3A SINE B2 2 183 -15 7 828 25 31 0 0 chr5 31883562 31883594 -120653665 + AT_rich Low_complexity Low_complexity 1 32 0 7 828 21 26 0 26 chr5 31884730 31884756 -120652503 + AT_rich Low_complexity Low_complexity 1 26 0 7 828 295 284 35 99 chr5 31884756 31884928 -120652331 - RSINE1 SINE B4 -2 163 3 7 828 21 26 0 26 chr5 31884928 31884940 -120652319 + AT_rich Low_complexity Low_complexity 1 12 0 7 828 603 194 101 29 chr5 31884951 31885089 -120652170 + B1_Mur2 SINE Alu 2 149 0 7 828 294 95 0 0 chr5 31885584 31885626 -120651633 + (CGTG)n Simple_repeat Simple_repeat 1 42 0 7 828 241 210 0 88 chr5 31885645 31885713 -120651546 - ID4_ SINE ID -10 73 12 7 828 769 188 227 0 chr5 31885996 31886172 -120651087 - B3 SINE B2 0 216 1 7 828 508 227 27 0 chr5 31886187 31886297 -120650962 - ID_B1 SINE B4 -9 215 103 7 828 1841 141 75 53 chr5 31886841 31887178 -120650081 + ORR1C2 LTR MaLR 1 347 -37 7 828 1304 110 16 5 chr5 31887178 31887370 -120649889 + B2_Mm2 SINE B2 1 194 -1 7 828 1841 141 75 53 chr5 31887370 31887408 -120649851 + ORR1C2 LTR MaLR 348 384 0 7 828 185 308 32 21 chr5 31887414 31887507 -120649752 + MIR SINE MIR 37 130 -78 7 828 418 296 252 7 chr5 31887776 31888058 -120649201 - L1MB8 LINE L1 -3 6175 5825 7 828 407 242 61 34 chr5 31888086 31888259 -120649000 - L1MB8 LINE L1 -393 5780 5588 7 828 578 228 83 77 chr5 31888281 31888339 -120648920 - B2_Mm2 SINE B2 -3 192 121 7 828 459 0 0 0 chr5 31888339 31888390 -120648869 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 828 718 184 1 9 chr5 31888390 31888512 -120648747 - B3 SINE B2 -86 130 11 7 828 238 292 51 51 chr5 31888519 31888656 -120648603 - L1MC4 LINE L1 -149 7893 7757 7 828 288 0 0 0 chr5 31888656 31888688 -120648571 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 828 420 248 24 89 chr5 31889877 31890001 -120647258 + PB1D10 SINE Alu 2 117 0 7 828 31 0 0 0 chr5 31890846 31890877 -120646382 + AT_rich Low_complexity Low_complexity 1 31 0 7 828 309 51 0 0 chr5 31890904 31890943 -120646316 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 828 267 160 317 10 chr5 31890944 31891045 -120646214 + Lx9 LINE L1 7513 7644 0 7 828 951 105 8 0 chr5 31891050 31891183 -120646076 - B2_Mm1a SINE B2 -58 135 2 7 828 878 173 179 0 chr5 31891183 31891362 -120645897 - B3 SINE B2 -5 211 1 7 828 868 266 41 27 chr5 31891502 31891722 -120645537 - ID_B1 SINE B4 0 224 2 7 828 432 192 150 10 chr5 31891773 31891873 -120645386 + PB1D7 SINE Alu 6 119 -1 7 828 243 191 0 0 chr5 31892785 31892827 -120644432 + MTEb LTR MaLR 22 63 -316 7 828 758 270 51 0 chr5 31892865 31893061 -120644198 + MTEb LTR MaLR 174 379 0 7 828 334 321 63 32 chr5 31893102 31893292 -120643967 - HAL1 LINE L1 -296 2211 2016 7 828 893 296 104 21 chr5 31893422 31893988 -120643271 - HAL1 LINE L1 -607 1900 1288 7 828 792 111 0 0 chr5 31894029 31894137 -120643122 - B1_Mur4 SINE Alu -1 149 42 7 828 365 207 21 103 chr5 31894150 31894247 -120643012 - PB1D10 SINE Alu -2 115 27 7 828 591 295 31 0 chr5 31894251 31894380 -120642879 + B3A SINE B2 1 133 -65 7 828 420 20 0 0 chr5 31894393 31894442 -120642817 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 828 525 269 52 30 chr5 31894476 31894610 -120642649 + B3A SINE B2 9 145 -53 7 828 262 325 270 86 chr5 31894837 31895026 -120642233 + ID_B1 SINE B4 2 224 0 7 828 576 231 174 0 chr5 31895088 31895272 -120641987 + ID_B1 SINE B4 7 222 -2 7 828 505 217 238 42 chr5 31895318 31895486 -120641773 + B3 SINE B2 1 201 -15 7 828 276 275 23 91 chr5 31895488 31895620 -120641639 + MT2B LTR ERVL 151 273 -328 7 828 558 265 76 0 chr5 31895506 31895638 -120641621 + B1_Mur1 SINE Alu 6 147 -2 7 828 1243 154 43 5 chr5 31895723 31895931 -120641328 + B3 SINE B2 1 216 0 7 828 549 203 38 68 chr5 31896579 31896711 -120640548 - B1F2 SINE Alu 0 149 22 7 828 227 395 16 32 chr5 31896937 31897060 -120640199 + MLT1K LTR MaLR 214 334 -261 7 828 29 60 0 0 chr5 31897300 31897350 -120639909 + AT_rich Low_complexity Low_complexity 1 50 0 7 828 624 236 74 7 chr5 31897350 31897499 -120639760 - RSINE1 SINE B4 -4 161 3 7 828 415 302 40 0 chr5 31897672 31897798 -120639461 + ID_B1 SINE B4 6 136 -88 8 828 333 265 0 35 chr5 31897881 31897967 -120639292 + PB1D10 SINE Alu 27 109 -8 8 828 868 161 0 0 chr5 31897995 31898125 -120639134 + B3 SINE B2 1 130 -86 8 828 282 309 35 139 chr5 31898624 31898797 -120638462 - LTR85b LTR Gypsy? -581 203 49 8 828 231 261 15 0 chr5 31899554 31899619 -120637640 + L2 LINE L2 2846 2911 -508 8 828 820 203 122 20 chr5 31899751 31899947 -120637312 - B3 SINE B2 0 216 1 8 828 948 52 22 0 chr5 31900285 31900420 -120636839 + (TC)n Simple_repeat Simple_repeat 1 138 0 8 828 665 284 76 35 chr5 31900518 31900715 -120636544 - ID_B1 SINE B4 -15 209 5 8 828 1026 115 7 0 chr5 31900747 31900886 -120636373 + B1_Mur4 SINE Alu 1 140 -10 8 828 413 225 81 0 chr5 31900900 31901011 -120636248 + PB1D7 SINE Alu 1 120 0 8 828 365 219 94 0 chr5 31901036 31901132 -120636127 + MER5A DNA MER1_type 82 186 -3 8 828 210 211 0 0 chr5 31901336 31901386 -120635873 + MIR SINE MIR 99 155 -121 8 828 438 241 0 53 chr5 31901516 31901630 -120635629 - PB1D7 SINE Alu -11 109 2 8 828 642 247 45 11 chr5 31901662 31901838 -120635421 - B3 SINE B2 0 216 35 8 828 240 35 0 0 chr5 31901861 31901890 -120635369 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 8 828 795 184 22 0 chr5 31901890 31902026 -120635233 - B1_Mur1 SINE Alu -10 139 1 8 828 239 222 29 100 chr5 31902824 31902894 -120634365 + ID_B1 SINE B4 153 217 -7 8 828 423 192 26 0 chr5 31903178 31903256 -120634003 - PB1D9 SINE Alu -30 90 11 8 828 376 299 36 48 chr5 31903356 31903521 -120633738 + RSINE1 SINE B4 3 165 0 8 828 490 281 0 9 chr5 31904012 31904127 -120633132 + PB1D7 SINE Alu 1 114 -6 8 828 22 35 0 0 chr5 31904137 31904166 -120633093 + AT_rich Low_complexity Low_complexity 1 29 0 8 828 294 214 52 112 chr5 31904244 31904313 -120632946 + B4 SINE B4 82 143 -149 8 828 887 178 0 26 chr5 31904313 31904469 -120632790 + B3 SINE B2 1 152 -64 8 828 425 222 44 0 chr5 31904470 31904560 -120632699 - B3A SINE B2 -103 95 2 8 828 23 33 0 0 chr5 31904569 31904599 -120632660 + AT_rich Low_complexity Low_complexity 1 30 0 8 828 413 218 0 226 chr5 31904615 31904805 -120632454 - RSINE1 SINE B4 0 165 19 8 828 267 79 0 0 chr5 31905445 31905483 -120631776 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 828 333 155 0 0 chr5 31905538 31905596 -120631663 + (TATG)n Simple_repeat Simple_repeat 1 58 0 8 828 456 275 8 70 chr5 31905597 31905726 -120631533 + RSINE1 SINE B4 8 128 -37 8 828 327 324 157 14 chr5 31905761 31905834 -120631425 - B4A SINE B4 -124 168 81 8 828 288 77 0 0 chr5 31905834 31905873 -120631386 + (TTA)n Simple_repeat Simple_repeat 2 40 0 8 828 327 324 157 14 chr5 31905873 31905946 -120631313 - B4A SINE B4 -212 80 1 8 828 2282 95 156 3 chr5 31906604 31906963 -120630296 - MTC LTR MaLR 0 421 8 8 828 411 279 49 28 chr5 31907514 31907658 -120629601 - RSINE1 SINE B4 -7 158 12 8 828 1109 88 0 7 chr5 31909220 31909368 -120627891 + B1_Mm SINE Alu 1 147 0 8 828 749 252 32 0 chr5 31909587 31909742 -120627517 - RSINE1 SINE B4 -4 161 2 8 828 503 192 104 37 chr5 31909879 31910014 -120627245 + B1_Mur3 SINE Alu 3 146 -3 8 828 778 192 8 0 chr5 31910067 31910197 -120627062 + B1_Mus2 SINE Alu 1 131 -16 8 828 344 272 39 116 chr5 31910226 31910439 -120626820 + B4 SINE B4 4 196 -96 8 828 569 252 36 76 chr5 31910394 31910408 -120626851 + CYRA11_Mm Unknown Y-chromosome 157 260 -357 8 828 1295 152 27 14 chr5 31910408 31910628 -120626631 - URR1B DNA MER1_type -2 223 1 8 828 569 252 36 76 chr5 31910628 31910643 -120626616 + CYRA11_Mm Unknown Y-chromosome 261 395 -222 8 828 311 226 45 45 chr5 31910682 31910770 -120626489 + RSINE1 SINE B4 78 165 0 8 828 405 299 174 41 chr5 31911118 31911313 -120625946 - ID_B1 SINE B4 -2 222 2 8 828 298 354 84 8 chr5 31911730 31911861 -120625398 - MIRm SINE MIR -1 275 135 8 828 494 248 39 8 chr5 31911925 31912055 -120625204 - MER5A1 DNA MER1_type -3 163 30 8 828 416 250 0 22 chr5 31912217 31912307 -120624952 + B4A SINE B4 81 168 -124 8 828 234 116 0 0 chr5 31912366 31912409 -120624850 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 8 828 616 226 7 15 chr5 31912485 31912620 -120624639 + B1F2 SINE Alu 14 147 -2 8 828 391 138 11 11 chr5 31912620 31912708 -120624551 + (CCAA)n Simple_repeat Simple_repeat 4 91 0 8 828 182 105 26 0 chr5 31912716 31912754 -120624505 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 8 828 1048 137 6 0 chr5 31913465 31913633 -120623626 + URR1A DNA MER1_type 58 226 0 8 828 247 132 0 0 chr5 31913640 31913678 -120623581 - Lx8 LINE L1 -330 7143 7106 8 828 226 219 0 0 chr5 31913659 31913700 -120623559 - Lx7 LINE L1 -584 7112 7072 8 828 325 337 86 0 chr5 31913698 31913861 -120623398 + Lx7 LINE L1 7138 7314 -382 8 828 416 239 99 18 chr5 31914909 31915020 -120622239 - B4A SINE B4 -8 284 165 8 828 287 320 57 9 chr5 31915049 31915175 -120622084 + MIRc SINE MIR 18 152 -116 8 828 405 0 0 0 chr5 31915201 31915246 -120622013 + (CAA)n Simple_repeat Simple_repeat 3 47 0 8 828 757 271 24 15 chr5 31915246 31915452 -120621807 + B3 SINE B2 3 210 -6 8 828 3692 40 95 0 chr5 31915630 31916083 -120621176 + L1_Mus1 LINE L1 6070 6565 -2 8 828 209 211 0 0 chr5 31916117 31916155 -120621104 + MIRb SINE MIR 23 60 -208 8 828 259 319 32 0 chr5 31917115 31917209 -120620050 - Tigger5 DNA MER2_type -19 2387 2291 8 828 408 283 17 34 chr5 31917877 31917994 -120619265 - PB1D10 SINE Alu -1 116 2 8 828 504 186 164 19 chr5 31918073 31918177 -120619082 - PB1D7 SINE Alu -1 119 1 8 828 470 259 110 14 chr5 31919372 31919517 -120617742 + RSINE1 SINE B4 3 161 -4 8 828 406 219 261 6 chr5 31920592 31920757 -120616502 - B3 SINE B2 -9 207 1 8 828 235 364 34 8 chr5 31920847 31920966 -120616293 + L3b LINE CR1 167 288 -194 8 828 1050 71 0 14 chr5 31921318 31921461 -120615798 - B1_Mus2 SINE Alu 0 147 7 8 828 549 247 36 91 chr5 31921323 31921488 -120615771 - B4 SINE B4 -69 223 68 8 828 841 266 29 47 chr5 31921622 31922055 -120615204 - Lx9 LINE L1 -213 7431 6959 8 828 911 45 0 0 chr5 31922188 31922298 -120614961 - B1_Mus1 SINE Alu -9 139 30 8 828 287 225 12 36 chr5 31922637 31922720 -120614539 - PB1D9 SINE Alu 0 120 40 8 828 435 219 58 0 chr5 31922765 31922862 -120614397 - B1F2 SINE Alu -9 108 2 8 828 341 301 67 50 chr5 31922862 31922906 -120614353 - B4 SINE B4 -203 89 44 8 828 686 203 0 15 chr5 31923051 31923186 -120614073 - B1_Mur1 SINE Alu -2 147 15 8 828 25 0 0 0 chr5 31923323 31923348 -120613911 + AT_rich Low_complexity Low_complexity 1 25 0 8 828 618 208 240 11 chr5 31923486 31923661 -120613598 - B3 SINE B2 0 216 2 8 828 1646 27 0 0 chr5 31923722 31923907 -120613352 - B2_Mm1a SINE B2 -7 186 2 8 828 339 25 0 0 chr5 31924088 31924128 -120613131 + (GA)n Simple_repeat Simple_repeat 2 41 0 8 828 408 97 0 0 chr5 31924128 31924189 -120613070 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 828 1279 85 68 0 chr5 31925290 31925466 -120611793 - B2_Mm2 SINE B2 -6 189 2 8 828 330 234 149 0 chr5 31925994 31926088 -120611171 - RSINE1 SINE B4 -48 117 10 8 828 926 216 139 0 chr5 31926100 31926294 -120610965 - ID_B1 SINE B4 -3 221 1 8 828 180 0 0 0 chr5 31926390 31926410 -120610849 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 8 828 1124 82 0 7 chr5 31926410 31926558 -120610701 - B1_Mus2 SINE Alu 0 147 1 8 828 240 338 14 0 chr5 31927068 31927139 -120610120 + ID4_ SINE ID 8 79 -4 8 828 236 257 306 0 chr5 31927150 31927294 -120609965 - L1MD3 LINE L1 -12 7983 7796 8 828 457 310 44 31 chr5 31927297 31927457 -120609802 - ID_B1 SINE B4 -46 178 17 8 828 649 199 191 44 chr5 31927471 31927786 -120609473 - L1MC3 LINE L1 -658 7127 6767 8 828 528 176 53 51 chr5 31927822 31927948 -120609311 + B1_Mur1 SINE Alu 6 136 -13 8 828 413 279 31 39 chr5 31928025 31928152 -120609107 - B1F SINE Alu -6 143 18 8 828 667 279 26 0 chr5 31928391 31928545 -120608714 + B4 SINE B4 71 228 -64 8 828 220 173 37 37 chr5 31928544 31928598 -120608661 + BC1_Mm scRNA scRNA 7 60 -92 8 828 216 250 110 33 chr5 31928598 31928631 -120608628 + ID_B1 SINE B4 7 100 -124 8 828 439 323 35 81 chr5 31928635 31928807 -120608452 + B4A SINE B4 129 292 0 8 828 498 17 0 0 chr5 31928898 31928957 -120608302 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 828 675 228 272 5 chr5 31930295 31930509 -120606750 + MTD LTR MaLR 123 393 -26 8 828 274 315 406 37 chr5 31931605 31931879 -120605380 - MTEa LTR MaLR -1 378 5 8 828 615 92 0 0 chr5 31932244 31932331 -120604928 + (GA)n Simple_repeat Simple_repeat 1 87 0 8 828 234 330 108 20 chr5 31933281 31933383 -120603876 + MIR SINE MIR 34 144 -118 8 828 2836 64 143 139 chr5 31933804 31934314 -120602945 + RLTR1B LTR ERV1 1 512 0 8 828 348 24 0 0 chr5 31935662 31935703 -120601556 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 828 358 275 201 11 chr5 31935803 31935987 -120601272 - L1MB8 LINE L1 -17 6161 5943 9 828 328 284 45 9 chr5 31936974 31937084 -120600175 - MARNA DNA Mariner -139 447 334 9 828 583 267 75 0 chr5 31937081 31937242 -120600017 - MER5A DNA MER1_type -5 184 12 9 828 268 266 51 41 chr5 31937247 31937345 -120599914 - MARNA DNA Mariner -247 339 241 9 828 281 268 138 7 chr5 31937388 31937489 -120599770 - B1F2 SINE Alu -1 116 1 9 828 21 0 0 0 chr5 31937617 31937638 -120599621 + AT_rich Low_complexity Low_complexity 1 21 0 9 828 230 184 0 0 chr5 31937878 31937916 -120599343 + A-rich Low_complexity Low_complexity 1 38 0 9 828 235 355 80 8 chr5 31940201 31940326 -120596933 - B1_Mur2 SINE Alu -1 148 15 9 828 939 132 0 0 chr5 31940450 31940579 -120596680 - B1_Mus1 SINE Alu -17 131 3 9 828 725 225 0 42 chr5 31940602 31940746 -120596513 - ID_B1 SINE B4 0 224 87 9 828 953 197 19 51 chr5 31941662 31941876 -120595383 - B3 SINE B2 -6 210 4 9 828 360 255 157 41 chr5 31941899 31942071 -120595188 - B3A SINE B2 -6 192 1 9 828 2824 52 3 9 chr5 31942080 31942428 -120594831 - ORR1A1 LTR MaLR 0 346 1 9 828 301 191 167 11 chr5 31943713 31943803 -120593456 - MLT1B LTR MaLR 0 390 287 9 828 548 218 82 15 chr5 31944086 31944221 -120593038 - B1_Mur2 SINE Alu -1 148 5 9 828 210 360 66 57 chr5 31944274 31944380 -120592879 - B4A SINE B4 -183 109 3 9 828 227 191 87 14 chr5 31945476 31945545 -120591714 - ID SINE ID -149 75 2 9 828 1104 93 0 0 chr5 31945751 31945890 -120591369 - B1_Mm SINE Alu -8 139 1 9 828 1358 60 16 37 chr5 31946308 31946498 -120590761 - B2_Mm2 SINE B2 -8 187 2 9 828 195 42 0 0 chr5 31946859 31946883 -120590376 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 9 828 216 188 0 20 chr5 31947747 31947796 -120589463 + B4A SINE B4 1 48 -244 9 828 279 293 0 0 chr5 31948504 31948579 -120588680 - PB1D7 SINE Alu -18 102 28 9 828 394 305 21 6 chr5 31949204 31949368 -120587891 + L1MA4A LINE L1 5746 5936 -367 9 828 935 63 8 0 chr5 31949369 31949496 -120587763 + (TG)n Simple_repeat Simple_repeat 2 129 0 9 828 339 156 47 0 chr5 31949812 31949876 -120587383 + L2a LINE L2 3356 3422 -4 9 828 1070 222 19 0 chr5 31950576 31950788 -120586471 + B3 SINE B2 1 216 0 9 828 809 90 16 0 chr5 31950817 31950939 -120586320 - B1_Mur4 SINE Alu -18 132 9 9 828 390 254 67 17 chr5 31950833 31950953 -120586306 - B4 SINE B4 -88 204 79 9 828 423 0 0 0 chr5 31951579 31951626 -120585633 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 828 665 274 31 13 chr5 31951629 31951788 -120585471 + RSINE1 SINE B4 4 165 0 9 828 678 208 13 41 chr5 31952093 31952278 -120584981 - B3 SINE B2 -4 212 30 9 828 303 212 5 14 chr5 31952407 31952556 -120584703 + (TG)n Simple_repeat Simple_repeat 1 147 0 9 828 384 22 0 0 chr5 31952556 31952601 -120584658 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 828 303 290 9 0 chr5 31952601 31952623 -120584636 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 828 282 293 267 0 chr5 31952627 31952794 -120584465 + MLT1G3 LTR MaLR 292 503 -92 9 828 250 250 71 12 chr5 31953135 31953220 -120584039 - L3 LINE CR1 -2247 2242 2153 9 828 275 152 0 43 chr5 31953580 31953649 -120583610 - MER53 DNA hAT -5 188 123 9 828 775 143 0 0 chr5 31953747 31953873 -120583386 + B1_Mur4 SINE Alu 23 148 -2 9 828 414 0 0 0 chr5 31954857 31954903 -120582356 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 828 336 322 0 0 chr5 31955812 31955930 -120581329 + MIRc SINE MIR 151 268 0 9 828 1571 163 72 0 chr5 31956105 31956408 -120580851 + ORR1D1 LTR MaLR 6 332 -42 9 828 1918 193 25 0 chr5 31956408 31956761 -120580498 - ORR1C1 LTR MaLR 0 378 17 9 828 286 161 89 0 chr5 31956757 31956813 -120580446 + ORR1D2 LTR MaLR 310 370 0 9 828 208 135 0 0 chr5 31958162 31958199 -120579060 + (T)n Simple_repeat Simple_repeat 1 37 0 9 828 659 273 102 14 chr5 31958773 31958954 -120578305 + Tigger7 DNA MER2_type 291 492 -1999 9 828 1346 101 0 36 chr5 31958954 31959149 -120578110 + B2_Mm2 SINE B2 1 188 -7 9 828 659 273 102 14 chr5 31959149 31959242 -120578017 + Tigger7 DNA MER2_type 493 588 -1903 9 828 297 294 12 12 chr5 31959399 31959410 -120577849 + ID SINE ID 72 82 -142 9 828 271 277 126 19 chr5 31959410 31959513 -120577746 + PB1D10 SINE Alu 1 114 -3 9 828 269 250 12 12 chr5 31959934 31960015 -120577244 - ID_B1 SINE B4 0 224 144 9 828 417 287 47 0 chr5 31960233 31960383 -120576876 - ID_B1 SINE B4 -67 157 1 9 828 505 286 34 13 chr5 31960646 31960795 -120576464 - RSINE1 SINE B4 -11 154 3 9 828 486 238 56 0 chr5 31961167 31961293 -120575966 - ID_B1 SINE B4 -4 220 88 9 828 837 149 7 26 chr5 31961787 31961939 -120575320 - B1_Mur3 SINE Alu 0 149 1 9 828 412 319 0 8 chr5 31962656 31962773 -120574486 - PB1 SINE Alu -11 116 1 9 828 343 279 143 9 chr5 31962834 31962939 -120574320 - RSINE1 SINE B4 0 165 47 9 828 557 192 0 8 chr5 31963450 31963581 -120573678 + CT-rich Low_complexity Low_complexity 4 133 0 9 828 326 330 24 43 chr5 31963663 31963799 -120573460 - B1F2 SINE Alu -5 144 1 9 828 265 140 0 34 chr5 31963800 31963859 -120573400 + CT-rich Low_complexity Low_complexity 4 60 0 9 828 232 256 50 25 chr5 31963983 31964063 -120573196 + MER33 DNA MER1_type 2 83 -241 9 828 2115 99 3 19 chr5 31964063 31964382 -120572877 + ORR1A2 LTR MaLR 14 327 0 9 828 846 153 226 6 chr5 31964448 31964625 -120572634 - B3 SINE B2 0 216 1 9 828 354 271 156 7 chr5 31964664 31964805 -120572454 - RSINE1 SINE B4 -2 163 2 9 828 465 200 65 26 chr5 31964852 31965006 -120572253 + MER33 DNA MER1_type 163 322 -2 9 828 304 310 19 29 chr5 31965108 31965211 -120572048 + MamSINE1 SINE tRNA 121 222 -68 9 828 414 278 17 0 chr5 31965497 31965612 -120571647 - PB1D7 SINE Alu -2 118 2 9 828 23 0 0 0 chr5 31965819 31965842 -120571417 + AT_rich Low_complexity Low_complexity 1 23 0 9 828 705 70 0 50 chr5 31965883 31966004 -120571255 - BC1_Mm scRNA scRNA -36 116 2 9 828 495 271 9 0 chr5 31966105 31966212 -120571047 + ID_B1 SINE B4 54 161 -63 9 828 239 200 18 18 chr5 31966258 31966314 -120570945 + PB1D10 SINE Alu 33 88 -29 9 828 798 326 73 28 chr5 31966396 31966582 -120570677 + MER44D DNA MER2_type 92 269 -436 9 828 1191 61 0 0 chr5 31966582 31966729 -120570530 + B1_Mus2 SINE Alu 1 147 0 9 828 798 326 73 28 chr5 31966729 31967078 -120570181 + MER44D DNA MER2_type 270 650 -55 9 828 757 50 0 0 chr5 31967274 31967373 -120569886 + BC1_Mm scRNA scRNA 1 99 -53 9 828 640 66 0 42 chr5 31967421 31967516 -120569743 - B1_Mur2 SINE Alu 0 149 59 9 828 333 0 0 0 chr5 31967800 31967837 -120569422 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 828 223 263 91 0 chr5 31968613 31968726 -120568533 + MIR SINE MIR 16 142 -126 9 828 853 215 0 0 chr5 31969020 31969169 -120568090 + B1F1 SINE Alu 1 149 0 9 828 795 223 29 0 chr5 31969514 31969689 -120567570 - B3 SINE B2 -35 181 2 9 828 1177 201 87 34 chr5 31969846 31970202 -120567057 + Lx9 LINE L1 7268 7642 -2 9 828 206 280 0 0 chr5 31970648 31970698 -120566561 + MIR SINE MIR 34 83 -125 9 828 227 264 28 0 chr5 31970789 31970861 -120566398 + MER5B DNA MER1_type 1 74 -104 9 828 194 62 31 0 chr5 31971252 31971284 -120565975 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 9 828 292 294 53 92 chr5 31972154 31972285 -120564974 - B4 SINE B4 -125 167 42 9 828 256 315 0 42 chr5 31972313 31972409 -120564850 - PB1D10 SINE Alu -7 110 19 9 828 352 246 73 80 chr5 31972994 31973131 -120564128 + ID_B1 SINE B4 88 223 -1 9 828 334 319 0 0 chr5 31973232 31973326 -120563933 + PB1D10 SINE Alu 14 107 -10 9 828 247 313 0 0 chr5 31973353 31973420 -120563839 + tRNA-Ala-GCA tRNA tRNA 2 68 -7 9 828 930 289 130 21 chr5 31975061 31975485 -120561774 + L1MB5 LINE L1 5651 6120 -54 9 828 316 255 84 11 chr5 31975489 31975584 -120561675 - PB1D10 SINE Alu -6 111 10 9 828 1139 209 14 5 chr5 31977708 31977915 -120559344 - B3 SINE B2 -7 209 1 9 828 536 269 28 8 chr5 31978343 31978505 -120558754 - ID_B1 SINE B4 -46 246 79 9 828 549 0 0 0 chr5 31978514 31978575 -120558684 + (TC)n Simple_repeat Simple_repeat 2 62 0 9 828 1252 34 0 0 chr5 31978575 31978721 -120558538 - B1_Mm SINE Alu 0 147 2 9 828 810 209 39 101 chr5 31978722 31978930 -120558329 - B3A SINE B2 0 195 1 9 828 470 229 0 0 chr5 31979145 31979228 -120558031 + ID4_ SINE ID 1 83 0 9 828 360 64 0 0 chr5 31979228 31979275 -120557984 + (GAAA)n Simple_repeat Simple_repeat 1 47 0 9 828 242 293 80 0 chr5 31979588 31979663 -120557596 - ID4 SINE ID 0 83 3 9 828 220 336 33 83 chr5 31979663 31979751 -120557508 - PB1 SINE Alu -44 83 2 9 828 326 228 12 12 chr5 31979979 31980059 -120557200 - RSINE1 SINE B4 -64 101 22 9 828 2642 178 74 34 chr5 31980126 31980353 -120556906 - RLTR18 LTR ERVK 0 616 395 9 828 1221 178 27 0 chr5 31980353 31980572 -120556687 - URR1B DNA MER1_type 0 225 1 9 828 2642 178 74 34 chr5 31980572 31980936 -120556323 - RLTR18 LTR ERVK -222 394 1 9 828 1482 57 0 45 chr5 31981198 31981399 -120555860 + B2_Mm2 SINE B2 1 192 -3 9 103 1039 241 75 80 chr5 31981441 31981815 -120555444 - MTEa LTR MaLR -7 372 1 9 829 24 0 0 0 chr5 31981956 31981980 -120555279 + AT_rich Low_complexity Low_complexity 1 24 0 9 829 458 273 56 0 chr5 31982663 31982824 -120554435 + L1MA8 LINE L1 5831 6000 -291 1 829 1741 128 77 7 chr5 31982860 31983160 -120554099 + ORR1A4 LTR MaLR 1 321 -8 1 829 246 209 209 0 chr5 31983240 31983331 -120553928 + L1MA8 LINE L1 6180 6289 -11 1 829 621 152 18 142 chr5 31983406 31983575 -120553684 + B1_Mur2 SINE Alu 2 149 0 1 829 625 230 0 29 chr5 31984017 31984156 -120553103 - B1F2 SINE Alu 0 149 15 1 829 726 235 27 21 chr5 31984238 31984425 -120552834 - B3A SINE B2 -1 197 10 1 829 814 272 60 80 chr5 31984427 31984778 -120552481 - MER44B DNA MER2_type -24 526 183 1 829 255 343 51 22 chr5 31984776 31984913 -120552346 - ID_B1 SINE B4 0 224 84 1 829 381 231 73 57 chr5 31985062 31985186 -120552073 + B4A SINE B4 106 231 -61 1 829 315 271 162 17 chr5 31985430 31985603 -120551656 - L1MEf LINE L1 -4965 1235 1038 1 829 270 0 0 0 chr5 31986790 31986820 -120550439 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 829 511 314 45 0 chr5 31987268 31987524 -120549735 + L1MA4 LINE L1 5633 5906 -394 1 829 189 0 0 0 chr5 31987530 31987551 -120549708 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1 829 2013 167 94 28 chr5 31988396 31988659 -120548600 + Lx5 LINE L1 6630 6911 -139 1 829 342 0 0 0 chr5 31988659 31988697 -120548562 + (TGG)n Simple_repeat Simple_repeat 2 39 0 1 829 2013 167 94 28 chr5 31988697 31988828 -120548431 + Lx5 LINE L1 6912 7049 -1 1 829 198 265 47 38 chr5 31988908 31989014 -120548245 + L2c LINE L2 3041 3147 -240 1 829 298 311 11 0 chr5 31989394 31989484 -120547775 - ID_B1 SINE B4 -5 219 129 1 829 468 113 0 27 chr5 31989968 31990041 -120547218 + tRNA-Lys-AAA tRNA tRNA 1 71 -5 1 829 1123 102 0 0 chr5 31990048 31990195 -120547064 + B1_Mus1 SINE Alu 2 148 0 1 829 486 160 10 50 chr5 31990531 31990630 -120546629 - PB1D9 SINE Alu -9 111 17 1 829 290 253 48 0 chr5 31990563 31990646 -120546613 - B4A SINE B4 -123 169 83 1 829 5495 55 0 0 chr5 31990860 31991527 -120545732 + L1Md_F2 LINE L1 5915 6581 -1 1 829 1314 58 0 0 chr5 31991560 31991930 -120545329 + (CA)n Simple_repeat Simple_repeat 1 370 0 1 829 23 33 0 0 chr5 31992564 31992594 -120544665 + AT_rich Low_complexity Low_complexity 1 30 0 1 829 1048 152 133 0 chr5 31992595 31992805 -120544454 - Lx3C LINE L1 0 6976 6739 1 829 737 200 0 0 chr5 31992835 31992965 -120544294 - B3 SINE B2 -86 130 1 1 829 538 220 90 30 chr5 31993083 31993229 -120544030 - ID_B1 SINE B4 -46 246 81 1 829 624 232 28 7 chr5 31993684 31993827 -120543432 - B3A SINE B2 -35 163 18 1 829 942 139 24 0 chr5 31993843 31994008 -120543251 - B2_Mm2 SINE B2 -26 169 1 1 829 460 287 227 50 chr5 31994312 31994815 -120542444 + L2a LINE L2 2283 2874 -545 1 829 471 304 150 44 chr5 31994867 31995245 -120542014 + L2a LINE L2 3002 3425 -1 1 829 421 259 6 140 chr5 31995395 31995552 -120541707 - ID_B1 SINE B4 -6 218 83 1 829 252 286 81 32 chr5 31996041 31996164 -120541095 + MIR3 SINE MIR 49 177 -31 1 829 589 297 160 16 chr5 31996213 31996638 -120540621 + MLT1D LTR MaLR 20 505 0 1 829 259 326 22 0 chr5 31996873 31996962 -120540297 + MIR3 SINE MIR 111 201 -7 1 829 996 111 17 39 chr5 31997198 31997376 -120539883 - B2_Mm2 SINE B2 -10 185 12 1 829 2257 67 13 0 chr5 31997543 31997858 -120539401 + ORR1A2 LTR MaLR 9 327 0 1 829 268 224 30 0 chr5 31997875 31997942 -120539317 + MER58C DNA MER1_type 146 214 -1 1 829 246 299 65 57 chr5 31998087 31998211 -120539048 + PB1 SINE Alu 1 125 -2 1 829 251 308 25 13 chr5 31998217 31998296 -120538963 + ID4_ SINE ID 4 83 0 1 829 201 147 0 0 chr5 31998526 31998560 -120538699 + (T)n Simple_repeat Simple_repeat 1 34 0 1 829 1197 48 0 7 chr5 31998560 31998707 -120538552 - B1_Mus2 SINE Alu 0 147 2 1 829 297 0 0 0 chr5 31998774 31998807 -120538452 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 1 829 268 213 91 26 chr5 31998839 31998916 -120538343 - RSINE1 SINE B4 -74 91 10 1 829 184 255 112 41 chr5 32000921 32001019 -120536240 + L2c LINE L2 3258 3362 -25 1 829 25 0 0 0 chr5 32001043 32001068 -120536191 + AT_rich Low_complexity Low_complexity 1 25 0 2 829 264 439 0 29 chr5 32001703 32001839 -120535420 + MIRm SINE MIR 22 153 -123 3 829 243 0 0 0 chr5 32002492 32002519 -120534740 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 829 795 272 58 11 chr5 32003017 32003292 -120533967 - B4A SINE B4 0 292 5 5 829 320 250 29 0 chr5 32004502 32004570 -120532689 - ID4_ SINE ID -6 77 8 6 829 1242 242 76 22 chr5 32005098 32005453 -120531806 + MTD LTR MaLR 46 419 0 7 829 265 287 100 0 chr5 32005532 32005682 -120531577 - L1MC4a LINE L1 -237 7645 7481 8 829 290 163 22 3 chr5 32005792 32005843 -120531416 - PB1 SINE Alu -64 63 6 9 829 388 278 0 0 chr5 32005905 32005995 -120531264 + Tigger5 DNA MER2_type 2313 2402 -4 1 829 319 235 35 12 chr5 32006009 32006095 -120531164 - L1MC4a LINE L1 -905 6977 6890 8 829 333 0 0 0 chr5 32006118 32006155 -120531104 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 829 448 243 90 45 chr5 32006313 32006468 -120530791 - RSINE1 SINE B4 0 165 4 1 829 24 32 0 0 chr5 32007034 32007065 -120530194 + AT_rich Low_complexity Low_complexity 1 31 0 1 829 925 172 64 0 chr5 32007074 32007277 -120529982 - B3 SINE B2 0 216 1 1 829 5571 64 20 0 chr5 32007911 32008627 -120528632 - L1_Mus1 LINE L1 0 6567 5838 1 829 2819 191 183 36 chr5 32008874 32009654 -120527605 + RMER19B LTR ERVK 8 902 0 1 829 251 306 8 16 chr5 32010892 32011018 -120526241 + HAL1 LINE L1 1548 1672 -835 1 829 1109 76 0 0 chr5 32011125 32011270 -120525989 + B1_Mm SINE Alu 3 147 0 1 829 808 185 7 14 chr5 32011706 32011854 -120525405 - B1_Mus1 SINE Alu 0 148 2 1 829 657 192 144 17 chr5 32011882 32012062 -120525197 - B3 SINE B2 -11 205 3 2 829 234 333 47 9 chr5 32012062 32012168 -120525091 + MLT1H LTR MaLR 105 214 -335 2 829 252 265 108 0 chr5 32012683 32012766 -120524493 + PB1D10 SINE Alu 1 92 -25 2 829 308 250 87 0 chr5 32012692 32012784 -120524475 + ID_B1 SINE B4 94 193 -31 2 829 627 226 170 6 chr5 32013291 32013473 -120523786 - B3 SINE B2 -3 213 2 2 829 627 286 34 2 chr5 32013494 32013676 -120523583 - B3A SINE B2 -36 180 1 2 829 697 213 55 0 chr5 32013880 32014007 -120523252 - RSINE1 SINE B4 -29 136 3 2 829 916 238 39 4 chr5 32014497 32014754 -120522505 - L1MB3 LINE L1 -122 6061 5796 2 829 1274 233 7 59 chr5 32015171 32015458 -120521801 + B4A SINE B4 1 272 -20 2 829 378 0 0 0 chr5 32015521 32015563 -120521696 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 829 669 304 106 12 chr5 32015839 32016085 -120521174 + MER44A DNA MER2_type 2 270 -69 3 829 2496 272 97 18 chr5 32016094 32017097 -120520162 + Lx8 LINE L1 6392 7473 0 3 829 442 324 19 0 chr5 32017261 32017366 -120519893 - PB1D7 SINE Alu -10 110 4 3 829 254 381 9 28 chr5 32017272 32017380 -120519879 - ID_B1 SINE B4 -49 175 70 3 829 213 199 116 27 chr5 32017388 32017481 -120519778 + L2b LINE L2 3283 3416 -10 3 829 22 0 0 0 chr5 32017792 32017814 -120519445 + AT_rich Low_complexity Low_complexity 1 22 0 3 829 357 301 27 95 chr5 32018212 32018359 -120518900 - MIRc SINE MIR -115 161 22 3 829 391 231 107 41 chr5 32018507 32018629 -120518630 + RSINE1 SINE B4 3 132 -33 3 829 216 204 0 0 chr5 32019126 32019170 -120518089 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 829 227 237 25 38 chr5 32020284 32020363 -120516896 - ID_B1 SINE B4 -1 223 146 3 829 1095 211 19 0 chr5 32020380 32020588 -120516671 - B3 SINE B2 -4 212 1 4 829 242 226 32 16 chr5 32020758 32020821 -120516438 + PB1D7 SINE Alu 51 114 -6 4 829 1069 275 92 24 chr5 32021786 32022121 -120515138 - MLT1A0 LTR MaLR -7 358 1 4 829 24 0 0 0 chr5 32022158 32022182 -120515077 + AT_rich Low_complexity Low_complexity 1 24 0 4 829 41 82 0 0 chr5 32022343 32022440 -120514819 + AT_rich Low_complexity Low_complexity 1 97 0 4 829 13262 83 18 14 chr5 32022954 32025633 -120511626 - L1VL2 LINE L1 -632 2983 300 4 829 470 123 0 12 chr5 32025633 32025715 -120511544 - L1VL2 LINE L1 -6148 187 107 4 829 680 294 69 47 chr5 32026029 32026304 -120510955 + B4A SINE B4 11 291 -1 4 829 247 180 39 34 chr5 32026381 32026559 -120510700 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 829 2164 165 107 93 chr5 32026603 32027427 -120509832 + RMER19B LTR ERVK 1 875 -27 4 829 322 288 266 0 chr5 32027474 32027651 -120509608 - L1ME3B LINE L1 -125 6115 5892 4 829 303 264 143 96 chr5 32027733 32027942 -120509317 - L1MD LINE L1 -1531 4615 4397 5 829 253 300 0 14 chr5 32027944 32028015 -120509244 - ID4_ SINE ID -1 82 13 5 829 538 323 106 25 chr5 32028015 32028459 -120508800 - L1M5 LINE L1 -1754 4392 3913 5 829 2203 152 12 24 chr5 32028573 32028985 -120508274 - MTB_Mm LTR MaLR 0 407 1 5 829 609 184 10 64 chr5 32029016 32029146 -120508113 - B1_Mur2 SINE Alu 0 120 8 5 829 359 308 54 40 chr5 32029146 32029159 -120508100 - B4 SINE B4 -62 192 80 5 829 364 283 124 0 chr5 32030749 32030894 -120506365 - RSINE1 SINE B4 0 165 3 5 829 251 243 24 98 chr5 32030999 32031081 -120506178 - B1_Mur4 SINE Alu -12 138 63 5 829 395 258 75 0 chr5 32031574 32031667 -120505592 + RSINE1 SINE B4 46 145 -20 5 829 284 0 0 27 chr5 32032101 32032138 -120505121 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 829 246 310 142 40 chr5 32032244 32032546 -120504713 - L2 LINE L2 -343 3076 2744 6 829 600 246 34 27 chr5 32033669 32033815 -120503444 + RSINE1 SINE B4 5 151 -14 6 829 213 132 0 0 chr5 32033822 32033860 -120503399 + (A)n Simple_repeat Simple_repeat 1 38 0 6 829 453 299 47 7 chr5 32034523 32034671 -120502588 + B4 SINE B4 2 155 -137 6 829 423 0 0 0 chr5 32034679 32034726 -120502533 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 829 224 330 11 43 chr5 32035345 32035437 -120501822 - ID4_ SINE ID -63 89 1 6 829 548 235 0 10 chr5 32036117 32036214 -120501045 + RSINE1 SINE B4 2 97 -68 6 829 285 188 0 0 chr5 32036214 32036262 -120500997 - MTC LTR MaLR 0 374 327 6 829 387 266 93 7 chr5 32036247 32036387 -120500872 - MTC LTR MaLR -264 157 6 6 829 759 267 0 58 chr5 32036388 32036595 -120500664 + B3A SINE B2 1 195 -3 6 829 294 167 0 0 chr5 32036638 32036686 -120500573 + RSINE1 SINE B4 93 140 -25 6 829 418 46 15 15 chr5 32036698 32036764 -120500495 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 829 189 107 0 0 chr5 32036764 32036792 -120500467 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 7 829 25 0 0 0 chr5 32036801 32036826 -120500433 + AT_rich Low_complexity Low_complexity 1 25 0 7 829 860 196 118 16 chr5 32036895 32037082 -120500177 - URR1B DNA MER1_type -19 206 1 7 829 504 327 12 36 chr5 32037276 32037441 -120499818 - B4A SINE B4 -131 161 1 7 829 498 285 74 14 chr5 32037637 32037879 -120499380 + L1VL1 LINE L1 3 242 -6180 7 829 381 275 80 74 chr5 32037879 32038069 -120499190 + L1VL4 LINE L1 675 815 -5801 7 829 2388 167 5 83 chr5 32038066 32038104 -120499155 + L1VL4 LINE L1 725 762 -5854 7 829 2440 61 0 6 chr5 32038104 32038418 -120498841 + L1_Mus1 LINE L1 6254 6565 -2 7 829 10134 106 17 30 chr5 32038418 32040532 -120496727 + L1VL4 LINE L1 763 2847 -3036 7 829 372 294 47 62 chr5 32040540 32040732 -120496527 - Lx5 LINE L1 -384 6666 6478 7 829 345 164 0 0 chr5 32040743 32040804 -120496455 - Lx5 LINE L1 -704 6346 6286 7 829 219 264 182 53 chr5 32040883 32041015 -120496244 + L2b LINE L2 3276 3424 -2 7 829 1392 68 11 5 chr5 32041301 32041492 -120495767 + B2_Mm1t SINE B2 2 193 0 7 829 196 326 75 11 chr5 32042155 32042248 -120495011 + L2b LINE L2 3272 3370 -5 8 829 531 101 0 0 chr5 32042898 32042977 -120494282 + (TCCC)n Simple_repeat Simple_repeat 4 82 0 8 829 180 125 0 0 chr5 32042990 32043022 -120494237 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 829 305 306 46 118 chr5 32043098 32043250 -120494009 - B4A SINE B4 -150 142 2 8 829 22 0 0 0 chr5 32043606 32043628 -120493631 + AT_rich Low_complexity Low_complexity 1 22 0 8 829 246 62 0 0 chr5 32043824 32043856 -120493403 + (TCTCCC)n Simple_repeat Simple_repeat 3 34 0 8 829 330 182 0 0 chr5 32044177 32044243 -120493016 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 8 829 279 294 103 58 chr5 32044314 32044469 -120492790 - RSINE1 SINE B4 0 165 4 8 829 257 297 42 42 chr5 32044555 32044650 -120492609 - ID_B1 SINE B4 -9 215 121 8 829 930 19 0 0 chr5 32044773 32044881 -120492378 + (TTTC)n Simple_repeat Simple_repeat 3 110 0 8 829 430 318 121 51 chr5 32045793 32046108 -120491151 - L1ME1 LINE L1 -3 6176 5840 9 829 327 282 129 30 chr5 32046262 32046525 -120490734 - L1ME1 LINE L1 -411 5753 5465 9 829 322 260 138 13 chr5 32046570 32046722 -120490537 - L1ME1 LINE L1 -1347 4799 4629 9 829 212 154 0 0 chr5 32047012 32047051 -120490208 + CT-rich Low_complexity Low_complexity 2 40 0 9 829 386 344 92 13 chr5 32047309 32047462 -120489797 - B4A SINE B4 -2 290 126 9 829 1112 102 0 0 chr5 32047479 32047626 -120489633 - B1_Mus2 SINE Alu 0 147 1 9 829 1640 36 0 0 chr5 32047643 32047836 -120489423 - B2_Mm1t SINE B2 0 193 1 9 829 511 276 14 69 chr5 32047840 32047984 -120489275 - B4A SINE B4 -156 136 1 9 829 276 281 39 15 chr5 32048079 32048209 -120489050 - L1MC LINE L1 -1212 4934 4802 9 829 309 283 102 107 chr5 32048268 32048474 -120488785 + B4 SINE B4 2 206 -86 9 829 459 0 0 0 chr5 32048539 32048590 -120488669 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 829 434 213 23 56 chr5 32048682 32048720 -120488539 + MT2B LTR ERVL 156 195 -389 9 829 709 50 99 0 chr5 32048720 32048821 -120488438 + B1_Mus2 SINE Alu 1 111 -36 9 829 252 0 0 0 chr5 32048950 32048978 -120488281 + (T)n Simple_repeat Simple_repeat 1 28 0 1 829 297 294 115 46 chr5 32048993 32049385 -120487874 - L1ME1 LINE L1 -1861 4285 3867 9 829 401 216 246 5 chr5 32049428 32049623 -120487636 - Lx9 LINE L1 -19 7625 7384 1 829 746 306 96 61 chr5 32049659 32050456 -120486803 - L1MEc LINE L1 -2296 4023 3208 1 829 1170 42 0 0 chr5 32050456 32050600 -120486659 - B1_Mus2 SINE Alu -2 145 2 1 829 746 306 96 61 chr5 32050600 32050991 -120486268 - L1MEc LINE L1 -3112 3207 2794 1 829 462 255 40 0 chr5 32051312 32051461 -120485798 - L1MEc LINE L1 -3948 2452 2298 1 829 445 111 24 12 chr5 32054868 32054950 -120482309 + (GGGAA)n Simple_repeat Simple_repeat 4 86 0 1 829 5870 72 24 0 chr5 32055663 32056441 -120480818 - L1_Mus1 LINE L1 0 6567 5771 1 829 21 0 0 0 chr5 32056451 32056472 -120480787 + AT_rich Low_complexity Low_complexity 1 21 0 1 829 492 236 0 39 chr5 32056517 32056645 -120480614 + ORR1E-int LTR MaLR 20 142 -1116 1 829 858 251 175 32 chr5 32056638 32057059 -120480200 + ORR1E-int LTR MaLR 639 1319 -644 1 829 337 315 117 60 chr5 32057053 32057254 -120480005 + ORR1E LTR MaLR 106 341 -38 1 829 685 295 170 95 chr5 32057567 32058091 -120479168 + MLT1G LTR MaLR 31 593 -2 1 829 3337 39 5 12 chr5 32058268 32058682 -120478577 + IAPLTR2a LTR ERVK 1 411 0 1 829 315 0 0 0 chr5 32058874 32058909 -120478350 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 829 345 227 78 49 chr5 32059021 32059123 -120478136 - PB1D10 SINE Alu -8 109 5 1 829 1008 218 19 0 chr5 32059746 32059957 -120477302 - B3 SINE B2 -1 215 1 1 829 21 0 0 0 chr5 32061888 32061909 -120475350 + AT_rich Low_complexity Low_complexity 1 21 0 1 829 754 86 8 8 chr5 32061982 32062099 -120475160 + (TTCC)n Simple_repeat Simple_repeat 3 119 0 1 829 21 36 0 0 chr5 32062264 32062292 -120474967 + AT_rich Low_complexity Low_complexity 1 28 0 1 829 652 242 13 13 chr5 32062664 32062819 -120474440 + ID_B1 SINE B4 70 224 0 1 829 242 151 52 86 chr5 32062767 32062825 -120474434 + PB1D9 SINE Alu 65 120 0 1 829 966 201 70 5 chr5 32063565 32063765 -120473494 + B3 SINE B2 2 214 -2 1 829 274 170 62 21 chr5 32063900 32063996 -120473263 + (TA)n Simple_repeat Simple_repeat 2 101 0 1 829 800 216 287 24 chr5 32064371 32064683 -120472576 - MTD LTR MaLR -1 418 5 1 829 396 0 0 0 chr5 32064963 32065007 -120472252 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 829 565 192 93 32 chr5 32065222 32065419 -120471840 - B4A SINE B4 -51 241 7 1 829 369 291 77 63 chr5 32065734 32065877 -120471382 + ID_B1 SINE B4 79 223 -1 1 829 1245 27 0 0 chr5 32066092 32066239 -120471020 + B1_Mm SINE Alu 1 147 0 1 829 180 111 0 0 chr5 32066453 32066480 -120470779 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 1 829 1888 186 5 20 chr5 32066726 32067122 -120470137 - L1_Mur2 LINE L1 -891 4986 4597 1 829 182 236 18 0 chr5 32067627 32067682 -120469577 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 1 829 345 278 189 5 chr5 32067829 32068035 -120469224 - L1MC5 LINE L1 -465 7496 7253 1 829 237 250 71 0 chr5 32068194 32068250 -120469009 + B1F SINE Alu 41 100 -49 1 829 1724 162 95 15 chr5 32068360 32068698 -120468561 - ORR1B2 LTR MaLR 0 367 3 1 829 308 300 11 22 chr5 32069456 32069548 -120467711 - LTR16E1 LTR ERVL 0 538 448 1 829 1084 251 164 19 chr5 32069556 32069922 -120467337 - MTD LTR MaLR 0 419 1 1 829 213 94 0 0 chr5 32070149 32070181 -120467078 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 829 492 247 166 39 chr5 32070333 32070514 -120466745 + MER20 DNA MER1_type 16 219 0 1 829 320 141 31 0 chr5 32070572 32070636 -120466623 + (CATA)n Simple_repeat Simple_repeat 2 67 0 1 829 909 298 66 55 chr5 32070656 32071168 -120466091 - L1MA5A LINE L1 -366 5931 5414 1 829 395 297 0 0 chr5 32071520 32071611 -120465648 - PB1D10 SINE Alu -2 115 25 1 829 25 0 0 0 chr5 32072064 32072089 -120465170 + AT_rich Low_complexity Low_complexity 1 25 0 1 829 2279 25 4 7 chr5 32072160 32072441 -120464818 - L1Md_F2 LINE L1 -1 6581 6302 1 829 268 253 51 31 chr5 32072728 32072826 -120464433 + MTEb LTR MaLR 278 377 -2 1 829 323 292 0 11 chr5 32073210 32073300 -120463959 + PB1D7 SINE Alu 26 114 -6 1 829 219 333 52 52 chr5 32074038 32074062 -120463197 - B4A SINE B4 -76 216 144 1 829 374 298 11 0 chr5 32074062 32074156 -120463103 - PB1D10 SINE Alu -9 108 14 1 829 219 333 52 52 chr5 32074156 32074174 -120463085 - B4A SINE B4 -76 143 81 1 829 37 23 0 0 chr5 32074191 32074235 -120463024 + AT_rich Low_complexity Low_complexity 1 44 0 1 829 281 230 118 0 chr5 32074353 32074449 -120462810 - PB1D7 SINE Alu -23 125 23 1 829 511 239 90 26 chr5 32074576 32074765 -120462494 + MER33 DNA MER1_type 1 201 -123 1 829 429 109 0 0 chr5 32074783 32074847 -120462412 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 829 305 299 75 0 chr5 32074874 32074981 -120462278 + L1MD2 LINE L1 32 146 -6401 1 829 319 370 52 37 chr5 32074968 32075240 -120462019 + L1ME1 LINE L1 5814 6089 -90 1 829 334 180 16 7 chr5 32075853 32075927 -120461332 + MTD LTR MaLR 6 77 -330 1 829 2977 172 40 9 chr5 32075952 32076039 -120461220 - RLTR20B3 LTR ERVK -9 568 483 1 829 297 0 0 0 chr5 32076039 32076072 -120461187 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 829 2977 172 40 9 chr5 32076072 32076535 -120460724 - RLTR20B3 LTR ERVK -95 482 3 1 829 3744 145 41 4 chr5 32076539 32077264 -120459995 - MYSERV16_I-int LTR ERVK -2 2324 1573 1 829 897 217 116 70 chr5 32077276 32077454 -120459805 + MTD LTR MaLR 138 341 -78 1 829 3892 157 43 6 chr5 32077454 32078121 -120459138 - RLTR17 LTR ERVK 0 692 1 1 829 897 217 116 70 chr5 32078121 32078200 -120459059 + MTD LTR MaLR 342 407 -12 1 829 207 318 268 39 chr5 32078319 32078804 -120458455 + L3 LINE CR1 3702 4297 -192 1 829 1598 238 136 31 chr5 32080370 32081164 -120456095 - L1MB8 LINE L1 -5 6173 5297 1 829 1017 72 72 0 chr5 32081166 32081304 -120455955 - B1_Mus1 SINE Alu 0 148 1 1 829 444 185 105 31 chr5 32081368 32081530 -120455729 - L1MB8 LINE L1 -869 5277 5104 1 829 832 292 31 62 chr5 32081541 32081800 -120455459 - MLT2B3 LTR ERVL -2 552 302 1 829 374 248 39 8 chr5 32081804 32081934 -120455325 - Ricksha_c DNA MuDR -1560 488 355 1 829 2848 166 79 12 chr5 32081968 32082634 -120454625 - L1MB8 LINE L1 -1081 5065 4307 1 829 6333 84 55 7 chr5 32082632 32083582 -120453677 + Lx LINE L1 5653 6647 -7 1 829 589 232 66 77 chr5 32083602 32083798 -120453461 - B3A SINE B2 0 198 5 1 829 477 260 31 0 chr5 32083902 32083998 -120453261 - B1F SINE Alu -15 134 36 1 829 314 321 28 42 chr5 32084055 32084198 -120453061 - B1F2 SINE Alu -8 141 1 1 829 941 267 56 88 chr5 32084337 32084835 -120452424 - L1MB2 LINE L1 -241 5930 5449 1 829 21 0 0 0 chr5 32084912 32084933 -120452326 + AT_rich Low_complexity Low_complexity 1 21 0 1 829 428 319 37 0 chr5 32084933 32085068 -120452191 - ID_B1 SINE B4 0 224 85 1 829 236 91 23 0 chr5 32085177 32085221 -120452038 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 1 829 851 258 110 60 chr5 32085239 32085820 -120451439 - L1M4 LINE L1 -1451 4695 4086 1 829 319 316 0 0 chr5 32085956 32086032 -120451227 - ID4 SINE ID -5 78 3 1 829 195 308 139 37 chr5 32087455 32087563 -120449696 - MIRb SINE MIR -130 138 20 1 829 180 0 0 0 chr5 32088388 32088408 -120448851 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 829 207 0 0 0 chr5 32088755 32088778 -120448481 + (T)n Simple_repeat Simple_repeat 1 23 0 1 829 1323 239 136 19 chr5 32089395 32089770 -120447489 - MTD LTR MaLR 0 419 1 1 829 194 279 29 29 chr5 32090058 32090128 -120447131 - MIR3 SINE MIR -15 193 124 1 829 197 290 61 51 chr5 32090880 32090978 -120446281 - L4 LINE RTE 0 2029 1931 1 829 258 192 0 0 chr5 32091370 32091422 -120445837 + (CATA)n Simple_repeat Simple_repeat 1 52 0 1 829 1072 273 68 34 chr5 32091443 32092267 -120444992 - L1MB8 LINE L1 -9 6169 5291 1 829 429 297 181 18 chr5 32092354 32092580 -120444679 - B4A SINE B4 -6 286 24 1 829 1357 298 75 2 chr5 32092583 32093397 -120443862 - L1MB8 LINE L1 -969 5177 4305 1 829 264 343 59 29 chr5 32094461 32094563 -120442696 - RMER12 LTR ERVK -472 850 746 1 829 250 320 80 91 chr5 32094634 32094833 -120442426 + L2a LINE L2 2919 3115 -311 1 829 393 253 0 0 chr5 32096162 32096241 -120441018 - BC1_Mm scRNA scRNA -73 79 1 1 829 489 284 140 31 chr5 32096328 32096750 -120440509 - L1ME3A LINE L1 -104 6069 5602 1 829 243 206 108 14 chr5 32096774 32096848 -120440411 - LTR41 LTR ERVL -2 766 686 1 829 183 42 0 0 chr5 32096850 32096874 -120440385 + (A)n Simple_repeat Simple_repeat 1 24 0 1 829 438 36 0 0 chr5 32097664 32097720 -120439539 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 829 477 80 0 0 chr5 32097720 32097795 -120439464 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 829 295 299 59 38 chr5 32097822 32098058 -120439201 - L1MB8 LINE L1 -5290 952 712 1 829 185 132 26 0 chr5 32098081 32098119 -120439140 + GA-rich Low_complexity Low_complexity 3 41 0 1 829 750 298 21 38 chr5 32098879 32099116 -120438143 + B4 SINE B4 5 237 -55 1 829 2943 129 123 0 chr5 32099167 32099688 -120437571 + RMER4B LTR ERVK 1 585 0 1 829 906 128 43 0 chr5 32100612 32100753 -120436506 - B1_Mur2 SINE Alu 0 149 3 1 829 1786 145 128 26 chr5 32100958 32101340 -120435919 - MTC LTR MaLR 0 421 1 1 829 1961 160 65 16 chr5 32101605 32101973 -120435286 - Lx4A LINE L1 -11 7047 6662 1 829 2268 113 35 3 chr5 32101973 32102344 -120434915 + L1_Mur2 LINE L1 5140 5522 -355 1 829 231 36 0 0 chr5 32102764 32102792 -120434467 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 829 841 104 104 0 chr5 32102806 32102931 -120434328 - B1_Mus1 SINE Alu -10 138 1 1 829 2045 207 99 38 chr5 32103192 32103749 -120433510 + RCHARR1 DNA MER1_type 230 820 -154 1 829 369 0 0 0 chr5 32103782 32103823 -120433436 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 829 685 161 24 55 chr5 32103823 32103987 -120433272 + RCHARR1 DNA MER1_type 816 974 0 1 829 338 269 53 66 chr5 32104100 32104251 -120433008 - RSINE1 SINE B4 -6 159 11 1 829 2181 50 53 0 chr5 32104879 32105160 -120432099 - L1Md_A LINE L1 0 6582 6287 1 829 7663 56 48 3 chr5 32105202 32106847 -120430412 - L1Md_F2 LINE L1 -13 6569 4819 1 829 327 297 62 15 chr5 32107609 32107739 -120429520 + B1F SINE Alu 1 136 -13 2 829 435 221 29 0 chr5 32107827 32107931 -120429328 + Lx8 LINE L1 6925 7031 -442 2 829 237 175 0 0 chr5 32107969 32108009 -120429250 + Lx8 LINE L1 7113 7152 -321 2 829 274 286 136 47 chr5 32108049 32108148 -120429111 + Lx8 LINE L1 7237 7334 -139 2 829 252 0 0 0 chr5 32108148 32108176 -120429083 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 829 274 286 136 47 chr5 32108176 32108289 -120428970 + Lx8 LINE L1 7335 7468 -5 2 829 197 119 24 0 chr5 32108299 32108341 -120428918 + (TATAA)n Simple_repeat Simple_repeat 3 45 0 2 829 25 0 0 0 chr5 32108341 32108366 -120428893 + AT_rich Low_complexity Low_complexity 1 25 0 2 829 28 29 0 0 chr5 32108526 32108561 -120428698 + AT_rich Low_complexity Low_complexity 1 35 0 2 829 189 0 0 0 chr5 32109682 32109703 -120427556 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2 829 180 77 0 0 chr5 32109835 32109861 -120427398 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 829 532 304 47 27 chr5 32110238 32110495 -120426764 - Tigger14a DNA MER2_type -29 295 34 2 829 21 0 0 0 chr5 32110655 32110676 -120426583 + AT_rich Low_complexity Low_complexity 1 21 0 2 829 392 354 16 0 chr5 32111713 32111840 -120425419 - MER102c DNA MER1_type 0 331 203 2 829 473 285 61 8 chr5 32112193 32112324 -120424935 - B1F2 SINE Alu -11 138 1 2 830 290 241 0 33 chr5 32112846 32112906 -120424353 - ID4 SINE ID -25 58 1 2 830 335 248 38 38 chr5 32112926 32113031 -120424228 - PB1D10 SINE Alu -2 115 11 2 830 210 150 0 0 chr5 32113038 32113078 -120424181 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 830 210 283 0 0 chr5 32114177 32114230 -120423029 + T-rich Low_complexity Low_complexity 1 53 0 2 830 25 0 0 0 chr5 32114755 32114780 -120422479 + AT_rich Low_complexity Low_complexity 1 25 0 2 830 351 0 0 0 chr5 32116956 32116995 -120420264 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 830 1214 65 0 0 chr5 32116995 32117134 -120420125 - B1_Mus2 SINE Alu -7 140 2 2 830 1125 209 15 0 chr5 32117406 32117612 -120419647 + B3 SINE B2 1 209 -7 2 830 218 182 34 68 chr5 32118910 32118969 -120418290 + ID4 SINE ID 21 77 -6 2 830 182 37 37 0 chr5 32119157 32119184 -120418075 + (TTTTTG)n Simple_repeat Simple_repeat 6 33 0 2 830 1279 42 7 0 chr5 32119184 32119328 -120417931 - B1_Mus2 SINE Alu 0 147 3 2 830 207 0 0 0 chr5 32120598 32120621 -120416638 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 830 361 81 32 0 chr5 32120929 32120991 -120416268 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 830 181 83 56 0 chr5 32121009 32121045 -120416214 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 830 510 300 256 11 chr5 32121816 32122082 -120415177 - MER2 DNA MER2_type -8 337 7 2 830 317 313 104 26 chr5 32122181 32122335 -120414924 + Charlie1a DNA MER1_type 5 170 -1285 2 830 294 304 85 31 chr5 32123497 32123626 -120413633 - B1F2 SINE Alu -13 136 1 2 830 24 32 0 0 chr5 32123966 32123997 -120413262 + AT_rich Low_complexity Low_complexity 1 31 0 2 830 8278 47 14 0 chr5 32123997 32125134 -120412125 - L1_Mus1 LINE L1 0 6567 5412 2 830 689 301 72 16 chr5 32125281 32125585 -120411674 - L1MB5 LINE L1 -194 5980 5660 2 830 443 328 147 85 chr5 32125669 32126152 -120411107 - MLT1F2 LTR MaLR -8 552 40 2 830 368 307 98 0 chr5 32126612 32126765 -120410494 - MLT1D LTR MaLR -2 503 336 2 830 223 319 14 0 chr5 32126791 32126860 -120410399 + L3 LINE CR1 3022 3091 -1398 2 830 206 328 31 0 chr5 32127212 32127276 -120409983 + L3 LINE CR1 3509 3574 -915 2 830 543 192 0 0 chr5 32128153 32128330 -120408929 + (TG)n Simple_repeat Simple_repeat 1 177 0 2 830 212 303 39 26 chr5 32128538 32128616 -120408643 - ID4_ SINE ID -2 81 3 2 830 250 26 51 0 chr5 32128964 32129003 -120408256 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2 830 531 306 220 18 chr5 32130236 32130785 -120406474 - L2 LINE L2 -1076 2343 1684 2 830 387 0 0 0 chr5 32131800 32131843 -120405416 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 830 1053 322 114 39 chr5 32131846 32132405 -120404854 - Lx8 LINE L1 -44 7429 6837 2 830 315 0 0 0 chr5 32132707 32132742 -120404517 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 830 735 144 0 0 chr5 32132742 32132881 -120404378 + (CA)n Simple_repeat Simple_repeat 2 140 0 2 830 859 147 0 23 chr5 32134251 32134383 -120402876 - B1_Mus1 SINE Alu -19 129 1 2 830 653 280 185 39 chr5 32135354 32135640 -120401619 + MER2 DNA MER2_type 17 344 -1 2 830 630 127 119 0 chr5 32135886 32136004 -120401255 - Lx3C LINE L1 -67 6909 6778 2 830 7660 131 63 30 chr5 32136004 32136296 -120400963 - MusHAL1 LINE L1 -646 2066 1797 2 830 1179 43 43 0 chr5 32136296 32136437 -120400822 - B1_Mus1 SINE Alu 0 148 2 2 830 7660 131 63 30 chr5 32136437 32137554 -120399705 - MusHAL1 LINE L1 -916 1796 611 2 830 2252 192 17 17 chr5 32137670 32138088 -120399171 - MTC LTR MaLR 0 421 4 2 830 249 337 59 55 chr5 32138760 32139017 -120398242 - MER102a DNA MER1_type -14 316 83 2 830 646 268 51 25 chr5 32139052 32139209 -120398050 - RSINE1 SINE B4 -1 164 4 2 830 1057 140 159 10 chr5 32140278 32140473 -120396786 - URR1A DNA MER1_type -2 224 1 2 830 3574 46 50 2 chr5 32140701 32140911 -120396348 + RLTR10C LTR ERVK 1 222 -214 2 830 396 0 0 0 chr5 32140911 32140955 -120396304 + (GA)n Simple_repeat Simple_repeat 2 45 0 2 830 3574 46 50 2 chr5 32140955 32141160 -120396099 + RLTR10C LTR ERVK 223 434 -2 2 830 905 41 0 69 chr5 32142018 32142148 -120395111 - L1_Mus1 LINE L1 0 6567 6447 2 830 204 40 0 0 chr5 32142384 32142409 -120394850 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 830 838 266 72 0 chr5 32142942 32143149 -120394110 - MER58A DNA MER1_type -1 223 2 2 830 347 317 198 11 chr5 32143260 32143442 -120393817 + MLT1A LTR MaLR 157 372 -2 2 830 828 289 190 0 chr5 32143834 32144145 -120393114 - MTE2b LTR MaLR -5 374 5 2 830 1483 207 158 3 chr5 32144146 32144500 -120392759 - MTD LTR MaLR 0 419 11 2 830 226 380 115 14 chr5 32145012 32145151 -120392108 + Tigger9a DNA Tigger 1 153 -579 2 830 832 253 80 21 chr5 32145441 32145728 -120391531 + L1M5 LINE L1 4445 4748 -1398 2 830 705 126 0 0 chr5 32146075 32146186 -120391073 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 2 830 309 325 26 26 chr5 32146462 32146579 -120390680 - L3 LINE CR1 -1073 3416 3300 2 830 424 282 53 13 chr5 32146623 32146774 -120390485 + L1M5 LINE L1 4795 4951 -1195 2 830 537 149 228 0 chr5 32146898 32147012 -120390247 + B1_Mur1 SINE Alu 1 140 -9 2 830 255 237 153 10 chr5 32147066 32147164 -120390095 + Charlie1a DNA MER1_type 1344 1455 0 2 830 258 32 0 0 chr5 32147628 32147659 -120389600 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 830 306 303 103 28 chr5 32147915 32148047 -120389212 - MER33 DNA MER1_type -17 307 177 2 830 3499 23 18 3 chr5 32148047 32148437 -120388822 + MTA_Mm LTR MaLR 1 396 0 2 830 306 303 103 28 chr5 32148437 32148586 -120388673 - MER33 DNA MER1_type -148 176 6 2 830 8233 46 5 2 chr5 32149947 32151164 -120386095 - L1Md_F2 LINE L1 0 6582 5362 2 830 1524 84 0 0 chr5 32151162 32151376 -120385883 + L1_Mm LINE L1 1960 2173 -3710 2 830 21 0 0 0 chr5 32151696 32151717 -120385542 + AT_rich Low_complexity Low_complexity 1 21 0 2 830 578 214 58 91 chr5 32151760 32151914 -120385345 - B1_Mur1 SINE Alu 0 149 1 2 830 664 71 0 0 chr5 32151946 32152031 -120385228 + BC1_Mm scRNA scRNA 1 85 -67 2 830 351 0 0 0 chr5 32152226 32152265 -120384994 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 830 557 126 16 25 chr5 32152704 32152826 -120384433 + GA-rich Low_complexity Low_complexity 4 124 0 2 830 698 128 37 0 chr5 32153008 32153117 -120384142 + B1_Mur4 SINE Alu 16 128 -22 2 830 229 279 127 0 chr5 32153149 32153228 -120384031 - MLT1F1 LTR MaLR -476 93 5 2 830 2285 182 336 11 chr5 32153416 32153972 -120383287 - RMER19A LTR ERVK 0 737 1 2 830 1136 150 106 34 chr5 32154155 32154362 -120382897 - URR1A DNA MER1_type -4 222 1 2 830 452 315 92 65 chr5 32154650 32154956 -120382303 - MER2 DNA MER2_type -28 317 4 2 830 243 229 0 0 chr5 32155011 32155072 -120382187 + (CATA)n Simple_repeat Simple_repeat 4 64 0 2 830 261 0 0 0 chr5 32155236 32155265 -120381994 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 830 292 293 0 51 chr5 32156042 32156121 -120381138 - ID4_ SINE ID -8 75 1 2 830 855 180 0 7 chr5 32156525 32156665 -120380594 + B1_Mur3 SINE Alu 9 147 -2 2 830 29 28 0 0 chr5 32156816 32156852 -120380407 + AT_rich Low_complexity Low_complexity 1 36 0 2 830 1246 62 0 0 chr5 32156984 32157130 -120380129 - B1_Mus1 SINE Alu -1 147 2 2 830 264 77 0 0 chr5 32157376 32157415 -120379844 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 830 209 226 0 31 chr5 32157418 32157482 -120379777 + CT-rich Low_complexity Low_complexity 3 64 0 2 830 396 0 0 0 chr5 32157482 32157526 -120379733 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 830 466 291 104 0 chr5 32157533 32157667 -120379592 - B3A SINE B2 -48 150 3 2 830 259 339 104 94 chr5 32158026 32158537 -120378722 - L2 LINE L2 -839 2580 2065 2 830 429 191 0 0 chr5 32158605 32158720 -120378539 + (CTCA)n Simple_repeat Simple_repeat 1 115 0 2 830 22 0 0 0 chr5 32158886 32158908 -120378351 + AT_rich Low_complexity Low_complexity 1 22 0 2 830 510 46 0 0 chr5 32159358 32159423 -120377836 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 830 659 295 96 23 chr5 32159428 32159688 -120377571 - B4A SINE B4 -13 279 1 2 830 22 35 0 0 chr5 32159916 32159945 -120377314 + AT_rich Low_complexity Low_complexity 1 29 0 2 830 388 200 383 26 chr5 32160324 32160478 -120376781 + B3 SINE B2 1 209 -7 2 830 2300 85 124 40 chr5 32161200 32161579 -120375680 - RLTR10A LTR ERVK 0 411 1 2 830 405 249 315 0 chr5 32162226 32162391 -120374868 - HAL1-3A_ME LINE L1 -661 2197 1981 2 830 189 0 0 0 chr5 32162397 32162418 -120374841 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 2 830 215 278 166 28 chr5 32163004 32163128 -120374131 + MIR SINE MIR 12 151 -111 3 830 207 0 0 0 chr5 32163213 32163236 -120374023 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 3 830 204 67 0 0 chr5 32165561 32165591 -120371668 + (T)n Simple_repeat Simple_repeat 1 30 0 3 830 22 0 0 0 chr5 32165699 32165721 -120371538 + AT_rich Low_complexity Low_complexity 1 22 0 3 830 721 269 80 66 chr5 32166940 32167227 -120370032 - B4 SINE B4 0 292 2 3 830 426 20 0 0 chr5 32167397 32167448 -120369811 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 830 5045 130 12 8 chr5 32167472 32168216 -120369043 + Lx LINE L1 5894 6640 -14 3 830 222 118 0 0 chr5 32168238 32168272 -120368987 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 830 294 320 109 0 chr5 32169193 32169340 -120367919 + MER5B DNA MER1_type 6 168 -10 3 830 618 269 32 49 chr5 32169738 32170023 -120367236 - L1MA6 LINE L1 -29 6271 5994 3 830 298 285 94 58 chr5 32170448 32170586 -120366673 - MIR SINE MIR -95 167 25 3 830 220 300 81 16 chr5 32171331 32171480 -120365779 + MIRm SINE MIR 36 190 -78 3 830 972 155 0 0 chr5 32171980 32172135 -120365124 + B2_Mm2 SINE B2 2 156 -39 3 830 562 281 35 12 chr5 32172135 32172354 -120364905 + L1M5 LINE L1 3730 3963 -2183 3 830 509 314 84 22 chr5 32172418 32172643 -120364616 + 7SK RNA RNA 12 250 -81 3 830 21 0 0 0 chr5 32172780 32172801 -120364458 + AT_rich Low_complexity Low_complexity 1 21 0 3 830 306 311 16 32 chr5 32172831 32172954 -120364305 + L1M2 LINE L1 4367 4487 -1656 3 830 567 274 97 7 chr5 32173014 32173168 -120364091 - MTEa-int LTR MaLR -1398 182 15 3 830 339 300 71 87 chr5 32173184 32173472 -120363787 - MTEa LTR MaLR 0 379 79 3 830 710 229 106 0 chr5 32173472 32173660 -120363599 + Lx7 LINE L1 6672 6879 -817 3 830 796 247 82 0 chr5 32173661 32173843 -120363416 - B3 SINE B2 -15 201 5 3 830 441 76 0 0 chr5 32173998 32174064 -120363195 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 830 338 265 100 41 chr5 32174987 32175347 -120361912 - L1M5 LINE L1 -1487 4659 4265 3 830 246 109 123 15 chr5 32175456 32175521 -120361738 + U2 snRNA snRNA 7 78 -110 3 830 21 0 0 0 chr5 32176821 32176842 -120360417 + AT_rich Low_complexity Low_complexity 1 21 0 3 830 967 232 43 5 chr5 32176903 32177111 -120360148 - B3 SINE B2 0 216 1 3 830 1107 174 122 0 chr5 32177334 32177530 -120359729 + URR1B DNA MER1_type 5 224 -1 3 830 214 311 74 46 chr5 32177615 32177723 -120359536 - MIRc SINE MIR -157 111 1 3 830 227 318 112 0 chr5 32178634 32178741 -120358518 + L2a LINE L2 3305 3423 -3 3 830 255 79 0 0 chr5 32180023 32180061 -120357198 + (T)n Simple_repeat Simple_repeat 1 38 0 3 830 969 95 73 0 chr5 32180061 32180198 -120357061 - B1_Mus1 SINE Alu 0 148 2 3 830 3312 24 45 5 chr5 32180405 32180786 -120356473 - MTA_Mm LTR MaLR 0 396 1 3 830 430 282 36 0 chr5 32181459 32181569 -120355690 - PB1D10 SINE Alu 0 117 4 3 830 27 0 0 0 chr5 32181620 32181647 -120355612 + AT_rich Low_complexity Low_complexity 1 27 0 3 830 338 255 21 0 chr5 32181805 32181899 -120355360 - L1MC4 LINE L1 -265 7777 7682 3 830 432 0 0 0 chr5 32181990 32182038 -120355221 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 830 230 259 155 23 chr5 32182042 32182199 -120355060 - L1MC4 LINE L1 -383 7612 7433 3 830 221 250 31 0 chr5 32182302 32182366 -120354893 + CT-rich Low_complexity Low_complexity 1 66 0 3 830 23 0 0 0 chr5 32182757 32182780 -120354479 + AT_rich Low_complexity Low_complexity 1 23 0 3 830 621 286 105 16 chr5 32182900 32183147 -120354112 - MTD LTR MaLR -36 383 85 3 830 207 0 0 0 chr5 32183149 32183172 -120354087 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 3 830 657 274 140 22 chr5 32183179 32183407 -120353852 + Lx5 LINE L1 6776 7030 -20 3 830 198 0 0 0 chr5 32183412 32183434 -120353825 + (CTAA)n Simple_repeat Simple_repeat 3 24 0 3 830 460 224 47 0 chr5 32183450 32183557 -120353702 - MTD LTR MaLR -303 116 5 3 830 254 311 80 19 chr5 32184892 32185044 -120352215 + MIRc SINE MIR 14 178 -30 3 830 812 243 100 31 chr5 32185235 32185529 -120351730 - L1M3 LINE L1 -623 5548 5228 3 830 746 226 0 0 chr5 32185535 32185659 -120351600 + B1_Mur1 SINE Alu 6 129 -20 3 830 224 79 53 0 chr5 32185659 32185697 -120351562 + (CATA)n Simple_repeat Simple_repeat 4 43 0 3 830 288 0 0 0 chr5 32186522 32186554 -120350705 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 830 5161 63 0 30 chr5 32186689 32187331 -120349928 + L1_Mus1 LINE L1 5945 6567 0 3 830 212 291 73 55 chr5 32187607 32187716 -120349543 - L2a LINE L2 0 3426 3316 3 830 216 0 0 0 chr5 32188037 32188061 -120349198 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 830 186 43 0 0 chr5 32188271 32188294 -120348965 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 3 830 4425 80 28 7 chr5 32188334 32188940 -120348319 - L1_Mus2 LINE L1 -123 5760 5142 3 830 6727 55 2 15 chr5 32188940 32189754 -120347505 + L1_Mus2 LINE L1 5763 6566 0 3 830 438 154 0 0 chr5 32189973 32190051 -120347208 + G-rich Low_complexity Low_complexity 5 82 0 3 830 242 279 73 0 chr5 32192698 32192766 -120344493 + MIRb SINE MIR 108 180 -88 3 830 317 282 37 73 chr5 32192852 32193043 -120344216 + ORR1C1 LTR MaLR 6 189 -189 3 830 1822 82 43 0 chr5 32193297 32193529 -120343730 + L1_Mus2 LINE L1 6325 6566 0 3 830 23 33 0 0 chr5 32194536 32194566 -120342693 + AT_rich Low_complexity Low_complexity 1 30 0 3 830 420 20 0 0 chr5 32196170 32196219 -120341040 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 830 4378 150 73 12 chr5 32196359 32197127 -120340132 - Lx3C LINE L1 -4 6972 6158 3 830 8838 131 27 17 chr5 32197127 32197313 -120339946 + Lx2B LINE L1 4470 4652 -1234 3 830 420 20 0 0 chr5 32197313 32197362 -120339897 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 830 1235 37 0 0 chr5 32197363 32197498 -120339761 - B1_Mus1 SINE Alu -12 136 2 3 830 8838 132 27 20 chr5 32197498 32198983 -120338276 + Lx2B LINE L1 4653 6140 -860 3 830 3119 140 2 8 chr5 32199205 32199709 -120337550 - L1_Mm LINE L1 -975 5337 4809 3 830 5335 99 21 19 chr5 32199709 32200461 -120336798 + Lx LINE L1 5895 6648 -6 3 830 1742 260 96 24 chr5 32200583 32201423 -120335836 - RCHARR1 DNA MER1_type -3 971 46 3 830 253 344 83 30 chr5 32202425 32202557 -120334702 + Charlie20a DNA Charlie 184 322 -485 3 830 238 345 16 25 chr5 32202732 32202854 -120334405 + Charlie20a DNA Charlie 566 686 -121 3 830 459 304 17 0 chr5 32203262 32203377 -120333882 + PB1D10 SINE Alu 1 117 0 3 830 797 266 11 6 chr5 32203720 32203894 -120333365 - B3A SINE B2 -21 177 3 3 830 393 274 105 9 chr5 32205472 32205586 -120331673 - B1F1 SINE Alu -21 128 4 3 830 920 181 7 0 chr5 32205760 32205904 -120331355 + B1_Mur3 SINE Alu 4 148 -1 3 830 1338 274 66 91 chr5 32206518 32206944 -120330315 + Tigger7 DNA MER2_type 10 431 -2060 3 830 566 179 59 51 chr5 32206944 32207062 -120330197 + PB1D9 SINE Alu 2 120 0 3 830 1338 274 66 91 chr5 32207062 32207197 -120330062 + Tigger7 DNA MER2_type 432 557 -1934 3 830 1270 55 0 0 chr5 32207203 32207348 -120329911 + B1_Mus2 SINE Alu 1 145 -2 3 830 294 29 0 0 chr5 32207360 32207395 -120329864 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 830 314 298 20 41 chr5 32207453 32207551 -120329708 + Tigger7 DNA MER2_type 2396 2491 0 3 830 393 375 31 26 chr5 32208712 32208939 -120328320 + LFSINE_Vert SINE SINE 226 453 -6 3 830 534 114 0 0 chr5 32209781 32209869 -120327390 + (TG)n Simple_repeat Simple_repeat 2 89 0 3 830 504 336 14 7 chr5 32209877 32210021 -120327238 - RSINE1 SINE B4 -13 152 8 3 830 180 176 0 0 chr5 32210040 32210074 -120327185 + T-rich Low_complexity Low_complexity 1 34 0 3 830 1117 199 23 23 chr5 32210084 32210300 -120326959 - B3 SINE B2 0 216 1 3 830 378 0 0 0 chr5 32210921 32210963 -120326296 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 830 26 0 0 0 chr5 32211756 32211782 -120325477 + AT_rich Low_complexity Low_complexity 1 26 0 3 830 286 226 211 19 chr5 32211876 32211980 -120325279 - ID_B1 SINE B4 -9 215 92 3 830 319 294 79 56 chr5 32213270 32213396 -120323863 - Charlie4z DNA MER1_type -23 144 16 3 830 282 264 0 0 chr5 32213422 32213513 -120323746 + L1MA5 LINE L1 6210 6300 0 3 830 250 226 32 0 chr5 32214720 32214782 -120322477 + L1MC3 LINE L1 6068 6131 -1654 3 830 24 0 0 0 chr5 32214807 32214831 -120322428 + AT_rich Low_complexity Low_complexity 1 24 0 3 830 220 191 24 0 chr5 32214848 32214890 -120322369 + C-rich Low_complexity Low_complexity 6 48 0 3 830 1076 133 0 6 chr5 32214890 32215071 -120322188 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 830 431 265 20 30 chr5 32215074 32215175 -120322084 - PB1D10 SINE Alu -17 100 1 3 830 207 171 26 13 chr5 32215218 32215295 -120321964 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 830 218 266 0 50 chr5 32215357 32215456 -120321803 + (TATG)n Simple_repeat Simple_repeat 2 95 0 3 830 354 320 48 8 chr5 32215464 32215590 -120321669 - MLT1A LTR MaLR 0 374 244 3 830 415 224 92 21 chr5 32215618 32215725 -120321534 + B1F1 SINE Alu 1 111 -6 3 830 452 307 79 48 chr5 32215732 32215961 -120321298 - MLT1A LTR MaLR -112 262 27 3 830 599 230 64 26 chr5 32215978 32216134 -120321125 + B3 SINE B2 49 210 -6 3 830 444 117 0 0 chr5 32216165 32216224 -120321035 + B3 SINE B2 1 59 -157 3 830 2291 168 30 108 chr5 32216224 32216252 -120321007 - RLTR31_Mm LTR ERVK 0 561 539 3 830 3761 88 6 14 chr5 32216252 32216750 -120320509 + L1Md_F2 LINE L1 6089 6582 0 3 830 2291 168 30 108 chr5 32216750 32217330 -120319929 - RLTR31_Mm LTR ERVK -23 538 1 3 830 325 159 191 0 chr5 32217330 32217392 -120319867 + B3 SINE B2 54 127 -89 3 830 261 238 45 45 chr5 32217395 32217505 -120319754 + Lx6 LINE L1 7308 7417 -43 3 830 647 287 43 25 chr5 32219262 32219423 -120317836 - RSINE1 SINE B4 0 165 2 3 830 581 324 42 55 chr5 32219588 32219918 -120317341 + L1MA9 LINE L1 5801 6126 -186 3 830 272 342 8 55 chr5 32220674 32220801 -120316458 - MER20 DNA MER1_type -6 213 93 3 830 2644 44 0 29 chr5 32221601 32221949 -120315310 - ORR1A1 LTR MaLR -8 338 1 4 830 375 337 73 21 chr5 32224225 32224416 -120312843 - MIRb SINE MIR -34 234 34 4 830 246 271 71 0 chr5 32226370 32226440 -120310819 + MER5A DNA MER1_type 47 121 -68 4 830 267 79 0 0 chr5 32227253 32227291 -120309968 + (T)n Simple_repeat Simple_repeat 1 38 0 4 830 1196 48 0 0 chr5 32227291 32227438 -120309821 - B1_Mus2 SINE Alu 0 147 1 4 830 962 161 210 0 chr5 32227488 32227674 -120309585 + URR1B DNA MER1_type 1 225 0 4 830 396 309 8 16 chr5 32228584 32228712 -120308547 + ID_B1 SINE B4 87 213 -11 4 830 213 262 0 0 chr5 32228999 32229041 -120308218 + polypurine Low_complexity Low_complexity 2 43 0 4 830 308 365 69 23 chr5 32229093 32229267 -120307992 - Tigger16a DNA Tigger -747 186 5 4 830 242 160 20 0 chr5 32230151 32230201 -120307058 + CT-rich Low_complexity Low_complexity 3 53 0 4 830 349 281 60 78 chr5 32230201 32230213 -120307046 - B4 SINE B4 -60 232 178 4 830 731 181 0 8 chr5 32230213 32230347 -120306912 - B1_Mur3 SINE Alu -8 141 9 4 830 349 281 60 78 chr5 32230347 32230367 -120306892 - B4 SINE B4 -60 177 70 4 830 1192 41 14 0 chr5 32230431 32230577 -120306682 + B1_Mur4 SINE Alu 2 149 -1 4 830 218 296 0 0 chr5 32231136 32231190 -120306069 + MIRm SINE MIR 27 80 -196 4 830 270 56 0 0 chr5 32231754 32231790 -120305469 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 830 294 182 45 0 chr5 32231805 32231871 -120305388 - PB1D10 SINE Alu -40 77 9 4 830 255 31 0 0 chr5 32232361 32232393 -120304866 + (CATA)n Simple_repeat Simple_repeat 4 35 0 4 830 269 118 20 0 chr5 32234400 32234451 -120302808 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 830 701 229 63 29 chr5 32234463 32234638 -120302621 - B3A SINE B2 -16 182 2 4 830 255 368 48 8 chr5 32235037 32235163 -120302096 + MIRb SINE MIR 20 150 -118 4 830 435 282 17 98 chr5 32237619 32237792 -120299467 - L2b LINE L2 -13 3374 3210 4 830 238 148 37 0 chr5 32238046 32238100 -120299159 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 830 552 286 70 5 chr5 32238183 32238397 -120298862 + MLT1B LTR MaLR 1 228 -162 4 830 1209 121 11 27 chr5 32238523 32238710 -120298549 + B2_Mm1t SINE B2 1 184 -9 4 830 279 218 46 3 chr5 32239588 32239667 -120297592 + PB1D10 SINE Alu 10 94 -33 4 830 290 317 20 10 chr5 32240036 32240138 -120297121 - MIRb SINE MIR -103 165 63 4 830 1286 74 17 11 chr5 32241394 32241572 -120295687 + B2_Mm2 SINE B2 2 180 -15 4 830 198 0 0 0 chr5 32241614 32241636 -120295623 + (A)n Simple_repeat Simple_repeat 1 22 0 4 830 313 282 13 0 chr5 32241877 32241955 -120295304 + ID4_ SINE ID 2 80 -3 4 830 403 256 77 16 chr5 32241993 32242134 -120295125 + B4A SINE B4 2 144 -148 4 830 255 31 0 0 chr5 32242210 32242242 -120295017 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 830 234 344 33 0 chr5 32242931 32243021 -120294238 - PB1D10 SINE Alu -2 115 23 4 103 24 0 0 0 chr5 32243707 32243731 -120293528 + AT_rich Low_complexity Low_complexity 1 24 0 4 831 1157 184 24 5 chr5 32243814 32244021 -120293238 - B3 SINE B2 -5 211 1 4 831 632 330 124 28 chr5 32245840 32246194 -120291065 - L2 LINE L2 -522 2897 2495 4 831 2279 150 68 8 chr5 32246194 32246591 -120290668 - MTC LTR MaLR 0 421 1 4 831 632 330 124 28 chr5 32246591 32246818 -120290441 - L2 LINE L2 -925 2494 2260 4 831 228 309 59 0 chr5 32246937 32247005 -120290254 - Cheshire DNA MER1_type -2156 264 193 4 831 411 21 0 0 chr5 32247085 32247133 -120290126 + (TTGG)n Simple_repeat Simple_repeat 3 50 0 4 831 635 259 43 57 chr5 32247379 32247559 -120289700 - B3A SINE B2 -15 183 8 4 831 196 316 10 10 chr5 32247663 32247759 -120289500 + L3b LINE CR1 240 335 -147 4 831 594 75 0 0 chr5 32248457 32248537 -120288722 + (TCCC)n Simple_repeat Simple_repeat 4 83 0 4 831 225 132 0 0 chr5 32249362 32249400 -120287859 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 4 831 294 256 12 47 chr5 32252701 32252787 -120284472 - ID4_ SINE ID 0 83 1 4 831 227 339 181 9 chr5 32253345 32253461 -120283798 + ORR1E LTR MaLR 3 138 -221 4 831 431 334 56 42 chr5 32255340 32255771 -120281488 + L1ME1 LINE L1 4416 4852 -1294 4 831 312 48 0 0 chr5 32255776 32255818 -120281441 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 831 297 0 0 0 chr5 32255818 32255851 -120281408 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 831 269 239 55 79 chr5 32255889 32256016 -120281243 + L1MD LINE L1 4903 5026 -1120 4 831 666 275 165 29 chr5 32256021 32256336 -120280923 - MLT1A0 LTR MaLR -7 358 1 4 831 1326 98 16 0 chr5 32256444 32256627 -120280632 + B2_Mm2 SINE B2 1 186 -9 4 831 308 294 25 16 chr5 32256671 32256792 -120280467 + L1MD LINE L1 5121 5242 -904 4 831 227 93 23 0 chr5 32256802 32256845 -120280414 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 4 831 248 311 0 0 chr5 32256929 32256990 -120280269 + (TGGG)n Simple_repeat Simple_repeat 4 64 0 4 831 656 236 117 55 chr5 32256997 32257288 -120279971 + L1ME1 LINE L1 5408 5716 -448 4 831 652 153 16 25 chr5 32257313 32257434 -120279825 - B1_Mur4 SINE Alu 0 150 31 4 831 295 252 68 115 chr5 32257319 32257467 -120279792 - B4 SINE B4 -72 220 80 4 831 1179 238 44 54 chr5 32257467 32257934 -120279325 + L1ME1 LINE L1 5717 6333 -1 4 831 695 211 8 8 chr5 32258421 32258550 -120278709 + B1_Mur1 SINE Alu 1 129 -20 4 831 225 314 78 31 chr5 32258896 32259024 -120278235 - L2a LINE L2 -1 3425 3292 4 831 22 0 0 0 chr5 32260411 32260433 -120276826 + AT_rich Low_complexity Low_complexity 1 22 0 4 831 259 45 22 22 chr5 32261657 32261703 -120275556 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 4 831 536 206 10 0 chr5 32261941 32262043 -120275216 - URR1A DNA MER1_type -123 103 1 4 831 1375 170 9 0 chr5 32262698 32262921 -120274338 + URR1B DNA MER1_type 1 225 0 4 831 1180 55 0 14 chr5 32263223 32263370 -120273889 + B1_Mus1 SINE Alu 2 146 -2 4 831 233 128 0 21 chr5 32263692 32263740 -120273519 + (TAA)n Simple_repeat Simple_repeat 1 47 0 4 831 201 288 17 0 chr5 32265270 32265329 -120271930 + CT-rich Low_complexity Low_complexity 1 60 0 4 831 219 163 0 23 chr5 32265699 32265743 -120271516 + A-rich Low_complexity Low_complexity 5 47 0 4 831 414 273 40 0 chr5 32266108 32266207 -120271052 + PB1D10 SINE Alu 5 107 -10 4 831 394 202 107 39 chr5 32267883 32267986 -120269273 - PB1D10 SINE Alu -2 115 6 4 831 327 247 0 38 chr5 32267915 32267995 -120269264 - ID_B1 SINE B4 -68 156 80 4 831 338 61 0 20 chr5 32271054 32271104 -120266155 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 831 30 0 0 0 chr5 32271708 32271738 -120265521 + AT_rich Low_complexity Low_complexity 1 30 0 4 831 3726 120 45 3 chr5 32271740 32272343 -120264916 - Lx3B LINE L1 -4 6969 6342 4 831 207 0 0 0 chr5 32272349 32272372 -120264887 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 831 251 321 49 49 chr5 32272401 32272627 -120264632 - Lx8 LINE L1 -34 7439 7214 4 831 869 161 5 3 chr5 32272629 32273239 -120264020 + CT-rich Low_complexity Low_complexity 1 611 0 4 831 1115 311 54 9 chr5 32273248 32273677 -120263582 - Lx8 LINE L1 -282 7191 6744 4 831 830 321 11 11 chr5 32274169 32274440 -120262819 + B4A SINE B4 20 290 -2 4 831 646 243 14 0 chr5 32274531 32274671 -120262588 + B3A SINE B2 3 144 -54 4 831 324 0 0 0 chr5 32274678 32274714 -120262545 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 831 4216 147 9 3 chr5 32274741 32275131 -120262128 + Lx LINE L1 5950 6342 -312 4 831 360 0 0 0 chr5 32275131 32275171 -120262088 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 831 4216 147 9 3 chr5 32275171 32275471 -120261788 + Lx LINE L1 6343 6643 -11 4 831 183 239 0 0 chr5 32275900 32275946 -120261313 + CT-rich Low_complexity Low_complexity 3 48 0 4 831 224 284 90 0 chr5 32276060 32276127 -120261132 + B1F SINE Alu 42 114 -35 4 831 504 72 0 0 chr5 32276141 32276210 -120261049 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 831 471 35 0 0 chr5 32276210 32276266 -120260993 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 831 350 271 77 56 chr5 32276932 32277166 -120260093 + Tigger16a DNA Tigger 694 932 -1 4 831 219 342 49 24 chr5 32277527 32277650 -120259609 + L2a LINE L2 3043 3168 -258 4 831 1208 48 0 0 chr5 32277667 32277813 -120259446 + B1_Mus2 SINE Alu 2 147 0 4 831 421 282 23 12 chr5 32278034 32278182 -120259077 + B1F SINE Alu 2 147 -2 4 831 405 0 0 0 chr5 32278318 32278363 -120258896 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 831 225 0 0 0 chr5 32278604 32278629 -120258630 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 4 831 358 268 73 0 chr5 32278630 32278712 -120258547 - PB1D10 SINE Alu -29 88 1 4 831 221 259 44 56 chr5 32279180 32279270 -120257989 - MIRc SINE MIR -110 158 70 4 831 763 301 83 21 chr5 32279694 32280081 -120257178 - L1MC4 LINE L1 -144 7898 7488 4 831 285 225 83 32 chr5 32280286 32280442 -120256817 - L1MC4 LINE L1 -879 7163 7000 4 831 296 313 150 53 chr5 32280507 32280733 -120256526 - MLT1E1A LTR MaLR 0 680 433 4 831 645 200 0 24 chr5 32280970 32281093 -120256166 - PB1D9 SINE Alu 0 120 1 4 831 1962 141 137 29 chr5 32281241 32281621 -120255638 - MTC LTR MaLR 0 421 1 4 831 294 242 15 0 chr5 32281621 32281687 -120255572 - MLT1E1A LTR MaLR -560 67 1 4 831 455 317 80 34 chr5 32281749 32281987 -120255272 + B4A SINE B4 42 290 -2 4 831 570 67 0 0 chr5 32284307 32284382 -120252877 + (GGGA)n Simple_repeat Simple_repeat 4 78 0 4 831 198 0 0 0 chr5 32286455 32286477 -120250782 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 831 212 100 0 24 chr5 32288133 32288174 -120249085 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 831 684 280 69 14 chr5 32288234 32288451 -120248808 - B4A SINE B4 -62 230 2 4 831 182 339 75 42 chr5 32288582 32288702 -120248557 - L2a LINE L2 -1 3425 3302 4 831 504 48 0 0 chr5 32289180 32289243 -120248016 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 831 284 116 0 78 chr5 32289390 32289493 -120247766 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 5 831 481 279 102 35 chr5 32289610 32289807 -120247452 - B3 SINE B2 -6 210 1 5 831 251 333 0 0 chr5 32289850 32289925 -120247334 - B1F SINE Alu -1 148 74 5 831 199 282 17 127 chr5 32290078 32290196 -120247063 + MER5A DNA MER1_type 63 167 -22 5 831 36172 42 7 2 chr5 32290993 32296164 -120241095 + L1Md_T LINE L1 354 5589 -297 5 831 9178 5 0 0 chr5 32296164 32297160 -120240099 + L1Md_T LINE L1 5590 6585 0 5 831 522 83 0 0 chr5 32297501 32297573 -120239686 + (CTG)n Simple_repeat Simple_repeat 3 74 0 5 831 1148 255 39 24 chr5 32297848 32298182 -120239077 - MTEb LTR MaLR -36 343 5 5 831 890 101 54 8 chr5 32298184 32298314 -120238945 + B1_Mus1 SINE Alu 1 136 -12 5 831 21 0 0 0 chr5 32298523 32298544 -120238715 + AT_rich Low_complexity Low_complexity 1 21 0 5 831 247 222 41 14 chr5 32299002 32299075 -120238184 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 831 514 277 43 7 chr5 32299250 32299388 -120237871 - B1F SINE Alu -6 143 1 5 831 214 265 147 0 chr5 32299422 32299490 -120237769 + RSINE1 SINE B4 6 83 -82 5 831 860 143 104 0 chr5 32299437 32299591 -120237668 + B3 SINE B2 30 199 -17 5 831 226 311 143 6 chr5 32299625 32299838 -120237421 + MIRb SINE MIR 20 255 -7 5 831 186 43 0 0 chr5 32301179 32301202 -120236057 + (CAT)n Simple_repeat Simple_repeat 1 23 0 5 831 233 365 29 7 chr5 32301837 32301975 -120235284 + MIRb SINE MIR 52 192 -76 5 831 907 61 20 13 chr5 32302033 32302183 -120235076 + (GA)n Simple_repeat Simple_repeat 2 152 0 5 831 479 103 0 25 chr5 32304991 32305071 -120232188 + (GAAAA)n Simple_repeat Simple_repeat 2 79 0 5 831 320 248 73 43 chr5 32305897 32306061 -120231198 + L1ME2z LINE L1 7109 7277 -765 5 831 667 206 233 12 chr5 32306076 32306248 -120231011 + B3 SINE B2 1 210 -6 5 831 323 282 60 63 chr5 32306764 32307033 -120230226 + L1ME2z LINE L1 6201 6429 -15 5 831 510 149 0 0 chr5 32307435 32307522 -120229737 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 5 831 669 263 81 19 chr5 32307680 32307994 -120229265 - L1MA4 LINE L1 -1578 6066 5746 5 831 727 169 26 66 chr5 32309104 32309256 -120228003 - B1_Mur2 SINE Alu -1 148 3 5 831 256 334 31 27 chr5 32309338 32309499 -120227760 - MIRb SINE MIR -87 175 20 5 831 235 259 91 74 chr5 32309881 32310002 -120227257 + MER20 DNA MER1_type 96 218 -1 5 831 246 292 0 33 chr5 32311479 32311571 -120225688 - MLT1A1 LTR MaLR 0 408 320 5 831 426 313 91 20 chr5 32313597 32313796 -120223463 + MER58C DNA MER1_type 1 213 -2 5 831 287 302 0 9 chr5 32314141 32314248 -120223011 - L1M4b LINE L1 -4203 3131 3026 5 831 600 111 0 27 chr5 32314516 32314627 -120222632 + (TCTCC)n Simple_repeat Simple_repeat 2 109 0 5 831 494 260 62 23 chr5 32316969 32317099 -120220160 + RSINE1 SINE B4 3 137 -28 5 831 588 264 54 21 chr5 32317691 32317877 -120219382 - B3A SINE B2 -6 192 1 5 831 455 323 81 23 chr5 32318279 32318816 -120218443 - L1M5 LINE L1 -572 5872 5283 5 831 359 278 108 54 chr5 32319238 32319424 -120217835 - L1M5 LINE L1 -1096 5050 4855 5 831 319 190 0 0 chr5 32319437 32319495 -120217764 + B1F SINE Alu 65 122 -27 5 831 279 154 56 168 chr5 32319541 32319595 -120217664 - L1M5 LINE L1 -1889 4257 4204 5 831 229 254 104 0 chr5 32319595 32319662 -120217597 + ID4_ SINE ID 2 75 -8 5 831 279 154 56 168 chr5 32319662 32319732 -120217527 - L1M5 LINE L1 -1943 4203 4147 5 831 235 311 0 39 chr5 32319907 32319920 -120217339 + ID SINE ID 75 84 -140 5 831 249 274 184 31 chr5 32319920 32320018 -120217241 + PB1D10 SINE Alu 4 116 -1 5 831 276 361 50 32 chr5 32320121 32320341 -120216918 - L2 LINE L2 -340 3079 2856 5 831 863 51 0 0 chr5 32320555 32320672 -120216587 - B1_Mus1 SINE Alu 0 148 32 5 831 298 176 72 14 chr5 32320613 32320682 -120216577 - 4.5SRNA scRNA scRNA -8 86 14 5 831 979 276 18 32 chr5 32320702 32320983 -120216276 + B4A SINE B4 2 278 -14 5 831 468 247 178 16 chr5 32321487 32321672 -120215587 + L1MB3 LINE L1 5899 6113 -70 5 831 328 294 20 27 chr5 32321859 32322006 -120215253 - MIR SINE MIR -1 261 116 5 831 33283 97 10 2 chr5 32323039 32329202 -120208057 - L1_Mus1 LINE L1 0 6567 353 5 831 763 286 50 43 chr5 32329704 32329982 -120207277 - B4 SINE B4 -12 280 1 5 831 468 223 35 18 chr5 32330445 32330559 -120206700 + PB1D10 SINE Alu 1 116 -1 5 831 548 252 44 0 chr5 32331008 32331143 -120206116 - B1_Mur1 SINE Alu -1 148 8 5 831 992 218 23 14 chr5 32331161 32331375 -120205884 - B3 SINE B2 0 216 1 5 831 220 157 157 0 chr5 32331534 32331585 -120205674 - B3A SINE B2 -137 61 3 5 831 344 211 22 174 chr5 32331596 32331734 -120205525 - PB1D10 SINE Alu 0 117 1 5 831 260 239 0 66 chr5 32332027 32332103 -120205156 + PB1D10 SINE Alu 47 117 0 5 831 231 299 72 15 chr5 32333473 32333610 -120203649 - MIRm SINE MIR -91 177 27 5 831 275 250 0 0 chr5 32335211 32335275 -120201984 + G-rich Low_complexity Low_complexity 3 66 0 5 831 599 302 20 0 chr5 32335284 32335433 -120201826 - B3A SINE B2 -46 152 1 5 831 367 235 253 6 chr5 32337696 32337862 -120199397 - ID_B1 SINE B4 -16 208 2 5 831 501 17 0 0 chr5 32338676 32338734 -120198525 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 831 180 0 0 0 chr5 32338782 32338802 -120198457 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 831 380 324 50 14 chr5 32338877 32339018 -120198241 - ID_B1 SINE B4 0 224 79 5 831 555 240 16 0 chr5 32341384 32341513 -120195746 - ID_B1 SINE B4 -4 220 90 5 831 338 264 0 65 chr5 32341434 32341527 -120195732 - PB1D10 SINE Alu -30 87 1 5 831 1147 166 33 14 chr5 32341737 32341951 -120195308 + URR1B DNA MER1_type 1 218 -7 5 831 342 0 0 0 chr5 32345344 32345382 -120191877 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 5 831 337 297 23 8 chr5 32345691 32345820 -120191439 - MIRc SINE MIR -118 150 20 5 831 21 0 0 0 chr5 32347003 32347024 -120190235 + AT_rich Low_complexity Low_complexity 1 21 0 5 831 22 0 0 0 chr5 32348423 32348445 -120188814 + AT_rich Low_complexity Low_complexity 1 22 0 5 831 378 229 0 0 chr5 32348725 32348810 -120188449 + ID4_ SINE ID 12 96 -56 5 831 222 118 0 0 chr5 32348990 32349024 -120188235 + (T)n Simple_repeat Simple_repeat 1 34 0 5 831 7784 65 4 24 chr5 32349465 32350622 -120186637 - L1_Mus1 LINE L1 0 6567 5484 5 831 1481 33 67 0 chr5 32350633 32350813 -120186446 - B2_Mm1a SINE B2 -1 192 1 5 831 292 298 52 68 chr5 32350920 32351272 -120185987 - L1ME3B LINE L1 -296 5944 5600 5 831 300 70 0 0 chr5 32351368 32351411 -120185848 + (T)n Simple_repeat Simple_repeat 1 43 0 5 831 221 372 11 11 chr5 32351429 32351516 -120185743 - L2b LINE L2 -5 3370 3284 5 831 27 29 0 0 chr5 32352687 32352721 -120184538 + AT_rich Low_complexity Low_complexity 1 34 0 5 831 180 157 58 19 chr5 32353558 32353610 -120183649 - MIR SINE MIR -74 188 135 5 831 455 276 108 23 chr5 32354119 32354249 -120183010 + B1F1 SINE Alu 1 141 -8 5 831 417 313 30 12 chr5 32354506 32354671 -120182588 - Tigger15a DNA TcMar -3 712 545 5 831 307 304 29 53 chr5 32354848 32355018 -120182241 - MLT1L LTR MaLR -249 361 196 5 831 270 293 0 13 chr5 32355025 32355101 -120182158 + ID4_ SINE ID 7 81 -2 5 831 895 126 6 48 chr5 32355968 32356135 -120181124 + RMER17D2 LTR ERVK 648 807 -2 5 831 377 282 17 0 chr5 32357124 32357241 -120180018 + PB1 SINE Alu 1 119 -8 5 831 659 241 152 16 chr5 32357255 32357512 -120179747 + B4 SINE B4 1 292 0 5 831 315 169 0 0 chr5 32357524 32357595 -120179664 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 831 213 39 0 0 chr5 32357595 32357621 -120179638 + (T)n Simple_repeat Simple_repeat 1 26 0 5 831 375 121 0 0 chr5 32358477 32358535 -120178724 + (GGGGA)n Simple_repeat Simple_repeat 2 59 0 5 831 860 181 0 32 chr5 32359679 32359833 -120177426 + B1_Mur4 SINE Alu 2 150 0 5 831 189 94 0 0 chr5 32360082 32360114 -120177145 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 5 831 250 387 16 0 chr5 32360725 32360849 -120176410 - L2b LINE L2 -10 3365 3240 5 831 219 378 20 0 chr5 32362188 32362286 -120174973 + MIRb SINE MIR 30 129 -139 5 831 535 339 17 0 chr5 32362605 32362785 -120174474 + Tigger5 DNA MER2_type 2 184 -2222 5 831 282 56 0 0 chr5 32362890 32362926 -120174333 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 5 831 483 267 10 0 chr5 32362927 32363028 -120174231 - RSINE1 SINE B4 -60 105 4 5 831 233 302 0 0 chr5 32363033 32363096 -120174163 + Tigger5 DNA MER2_type 2344 2406 0 5 831 548 272 110 47 chr5 32363108 32363520 -120173739 - L1MEe LINE L1 -3692 2474 2046 5 831 276 278 26 61 chr5 32363848 32363963 -120173296 - RLTR25A LTR ERVK -471 632 522 5 831 657 172 67 0 chr5 32363868 32364002 -120173257 - B1_Mur2 SINE Alu -5 144 2 5 831 307 317 48 27 chr5 32364382 32364528 -120172731 + MIRb SINE MIR 2 150 -118 5 831 662 274 19 44 chr5 32364712 32364918 -120172341 - MLT1E2 LTR MaLR -200 427 227 5 831 1181 48 7 0 chr5 32367808 32367955 -120169304 + B1_Mus1 SINE Alu 1 148 0 5 831 596 48 12 0 chr5 32367969 32368053 -120169206 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 831 388 317 16 8 chr5 32368185 32368306 -120168953 + MIR SINE MIR 18 139 -69 5 831 249 33 0 0 chr5 32368784 32368814 -120168445 + (GGA)n Simple_repeat Simple_repeat 1 30 0 5 831 357 24 0 0 chr5 32370014 32370056 -120167203 + (GA)n Simple_repeat Simple_repeat 2 43 0 6 831 992 256 49 53 chr5 32370450 32370735 -120166524 + B4 SINE B4 9 292 0 6 831 329 317 0 19 chr5 32370738 32370841 -120166418 + (CA)n Simple_repeat Simple_repeat 2 102 0 6 831 259 320 91 26 chr5 32370847 32371001 -120166258 - MER53 DNA hAT 0 193 30 6 831 594 280 51 0 chr5 32372792 32372967 -120164292 + MER58A DNA MER1_type 40 223 -1 6 832 899 251 78 22 chr5 32375443 32375712 -120161547 + B4 SINE B4 7 290 -2 6 832 1112 177 0 69 chr5 32376163 32376394 -120160865 + B3 SINE B2 2 216 0 6 832 262 299 0 0 chr5 32376434 32376501 -120160758 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 6 832 465 19 0 0 chr5 32377191 32377245 -120160014 + (TTA)n Simple_repeat Simple_repeat 2 55 0 6 832 446 231 0 0 chr5 32377828 32377919 -120159340 - MIRb SINE MIR -113 155 65 6 832 318 320 31 0 chr5 32378625 32378753 -120158506 + MIRb SINE MIR 16 147 -121 6 832 337 294 147 20 chr5 32382463 32382661 -120154598 - MIRb SINE MIR -19 249 27 6 832 206 192 19 0 chr5 32385308 32385360 -120151899 + GA-rich Low_complexity Low_complexity 1 53 0 6 832 491 191 81 9 chr5 32386239 32386350 -120150909 + B1F SINE Alu 9 127 -22 6 832 217 270 81 0 chr5 32388462 32388536 -120148723 + MIR SINE MIR 42 121 -87 6 832 1266 167 28 5 chr5 32388770 32388987 -120148272 - URR1B DNA MER1_type -3 222 1 6 832 255 333 77 14 chr5 32389331 32389474 -120147785 - MIRc SINE MIR -74 194 43 6 832 313 342 9 44 chr5 32389531 32389644 -120147615 - B4 SINE B4 -151 141 33 6 832 932 140 67 0 chr5 32389759 32389937 -120147322 - URR1B DNA MER1_type -1 224 35 6 832 278 312 36 110 chr5 32390322 32390616 -120146643 + RSINE1 SINE B4 1 281 -11 6 832 1040 141 22 0 chr5 32391001 32391186 -120146073 - URR1B DNA MER1_type -36 189 1 6 832 207 114 0 0 chr5 32391323 32391358 -120145901 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 6 832 303 148 19 19 chr5 32391830 32391933 -120145326 + (TCTG)n Simple_repeat Simple_repeat 2 104 0 6 832 236 246 14 28 chr5 32392608 32392679 -120144580 + CT-rich Low_complexity Low_complexity 5 74 0 6 832 666 266 30 6 chr5 32393102 32393261 -120143998 + ID_B1 SINE B4 79 241 -51 6 832 598 269 142 6 chr5 32394772 32394955 -120142304 + MIR SINE MIR 28 235 -27 6 832 762 273 109 23 chr5 32394967 32395057 -120142202 - MER2 DNA MER2_type -9 336 240 6 832 5047 110 84 44 chr5 32395057 32395928 -120141331 - RMER17A2 LTR ERVK 0 906 1 6 832 762 273 109 23 chr5 32395928 32396141 -120141118 - MER2 DNA MER2_type -106 239 7 6 832 300 53 0 0 chr5 32396296 32396334 -120140925 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 6 832 495 33 0 0 chr5 32396418 32396479 -120140780 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 832 288 0 0 0 chr5 32396479 32396510 -120140749 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 832 242 261 108 0 chr5 32397663 32397728 -120139531 - L2a LINE L2 -2 3424 3353 6 832 345 117 0 0 chr5 32398638 32398698 -120138561 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 832 189 0 0 0 chr5 32398762 32398783 -120138476 + (T)n Simple_repeat Simple_repeat 1 21 0 6 832 1231 48 7 0 chr5 32398783 32398929 -120138330 - B1_Mm SINE Alu 0 147 1 6 832 1130 95 0 13 chr5 32398986 32399136 -120138123 + B1_Mus1 SINE Alu 1 148 0 6 832 1635 77 9 13 chr5 32402236 32402461 -120134798 - L1Md_F2 LINE L1 0 6582 6359 6 832 225 364 141 0 chr5 32402537 32402658 -120134601 - MIRb SINE MIR -27 241 104 6 832 602 297 23 0 chr5 32403384 32403559 -120133700 + B4A SINE B4 1 179 -113 6 832 315 0 0 0 chr5 32403651 32403686 -120133573 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 832 293 163 0 74 chr5 32407651 32407950 -120129309 + CT-rich Low_complexity Low_complexity 1 276 0 6 832 1406 138 37 5 chr5 32408144 32408362 -120128897 + URR1B DNA MER1_type 1 225 0 6 832 266 207 113 105 chr5 32408395 32408519 -120128740 - MLT1A1 LTR MaLR -283 125 1 6 832 324 0 0 0 chr5 32409527 32409563 -120127696 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 6 832 358 319 80 18 chr5 32409602 32409765 -120127494 + MIR SINE MIR 60 232 -30 6 832 925 148 28 0 chr5 32411006 32411148 -120126111 - B1_Mus1 SINE Alu 0 148 3 6 832 1199 102 209 0 chr5 32411180 32411367 -120125892 - URR1A DNA MER1_type 0 226 1 6 832 313 320 97 13 chr5 32412472 32412627 -120124632 - LTR16A LTR ERVL -239 212 45 6 832 239 269 152 9 chr5 32413233 32413338 -120123921 - MIR SINE MIR -55 153 34 6 832 204 40 0 0 chr5 32413338 32413363 -120123896 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 6 832 222 304 58 42 chr5 32414599 32414719 -120122540 + MIRb SINE MIR 28 149 -119 6 832 229 330 19 102 chr5 32416054 32416162 -120121097 + MT2B2 LTR ERVL 156 254 -330 6 832 486 234 18 18 chr5 32416067 32416176 -120121083 + PB1D7 SINE Alu 7 115 -5 6 832 321 89 0 0 chr5 32416226 32416271 -120120988 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 832 920 256 65 32 chr5 32416274 32416553 -120120706 + B4A SINE B4 4 291 -1 6 832 389 298 22 39 chr5 32416741 32416919 -120120340 + L1MC4 LINE L1 6717 6891 -1151 6 832 487 273 9 9 chr5 32416919 32417030 -120120229 + B1F SINE Alu 2 112 -37 6 832 342 205 0 0 chr5 32417032 32417110 -120120149 + GA-rich Low_complexity Low_complexity 1 78 0 6 832 1137 338 108 30 chr5 32417111 32417306 -120119953 + L1MC4 LINE L1 6884 7094 -948 6 832 291 140 0 0 chr5 32417306 32417356 -120119903 + (CATG)n Simple_repeat Simple_repeat 2 51 0 6 832 1137 338 108 30 chr5 32417356 32417779 -120119480 + L1MC4 LINE L1 7095 7569 -473 6 832 518 273 28 7 chr5 32417779 32417923 -120119336 + B1F2 SINE Alu 3 149 0 6 832 1137 338 108 30 chr5 32417923 32418199 -120119060 + L1MC4 LINE L1 7570 7849 -193 6 832 1543 106 0 0 chr5 32418202 32418420 -120118839 + URR1A DNA MER1_type 3 220 -6 6 832 254 172 0 121 chr5 32418424 32418490 -120118769 + L1MC4 LINE L1 7843 7900 -142 6 832 330 80 0 0 chr5 32418523 32418573 -120118686 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 832 2798 148 84 2 chr5 32418639 32419105 -120118154 - Lx5 LINE L1 0 7050 6547 6 832 2496 170 5 2 chr5 32419119 32419532 -120117727 + Lx5 LINE L1 6142 6555 -495 6 832 1126 215 9 14 chr5 32419577 32419789 -120117470 + B3 SINE B2 1 211 -5 6 832 243 286 45 45 chr5 32420075 32420155 -120117104 + MER63D DNA AcHobo 303 384 -677 6 832 360 0 0 0 chr5 32420155 32420195 -120117064 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 832 243 286 45 45 chr5 32420195 32420224 -120117035 + MER63D DNA AcHobo 385 412 -649 6 832 771 117 14 21 chr5 32420288 32420428 -120116831 - URR1A DNA MER1_type -3 223 85 6 832 246 176 59 0 chr5 32421283 32421334 -120115925 + MIR SINE MIR 100 153 -109 6 832 369 287 97 34 chr5 32421463 32421639 -120115620 - MIR SINE MIR -47 215 37 6 832 302 0 26 0 chr5 32421847 32421885 -120115374 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 6 832 204 322 80 33 chr5 32422996 32423147 -120114112 - MIRb SINE MIR -57 211 54 6 832 240 191 0 0 chr5 32423366 32423413 -120113846 + (CAGGG)n Simple_repeat Simple_repeat 4 50 0 6 832 357 24 0 0 chr5 32424566 32424608 -120112651 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 832 249 337 54 0 chr5 32425685 32425777 -120111482 - PB1D10 SINE Alu 0 117 21 6 832 252 0 0 0 chr5 32425805 32425833 -120111426 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 832 201 74 0 0 chr5 32425847 32425874 -120111385 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 832 436 333 0 0 chr5 32425875 32425998 -120111261 - RSINE1 SINE B4 -36 129 7 6 832 207 0 0 0 chr5 32426737 32426760 -120110499 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 832 445 324 70 0 chr5 32428337 32428479 -120108780 - RSINE1 SINE B4 -6 159 8 6 832 636 139 22 40 chr5 32428675 32428952 -120108307 + (CA)n Simple_repeat Simple_repeat 1 272 0 6 832 189 385 44 0 chr5 32428978 32429069 -120108190 - MIRm SINE MIR -128 148 54 6 832 295 270 99 84 chr5 32429776 32429978 -120107281 - L1ME3A LINE L1 -109 6064 5860 6 832 310 147 14 14 chr5 32430358 32430427 -120106832 + C-rich Low_complexity Low_complexity 3 71 0 6 832 289 303 71 0 chr5 32431153 32431252 -120106007 - MLT1K LTR MaLR -9 586 481 6 832 326 270 149 79 chr5 32431378 32431619 -120105640 - MLT1K LTR MaLR -317 278 21 6 832 736 202 37 37 chr5 32431782 32431946 -120105313 - RSINE1 SINE B4 0 165 2 6 832 465 222 127 0 chr5 32431979 32432105 -120105154 + MTD LTR MaLR 3 144 -275 6 832 351 0 0 0 chr5 32432307 32432346 -120104913 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 832 466 240 39 52 chr5 32432769 32432913 -120104346 - B3 SINE B2 0 216 75 6 832 424 226 43 0 chr5 32432913 32433006 -120104253 + B3 SINE B2 2 98 -118 6 832 809 173 38 0 chr5 32433039 32433172 -120104087 - B1_Mur3 SINE Alu -9 140 3 6 832 369 62 0 0 chr5 32433175 32433223 -120104036 + (TTG)n Simple_repeat Simple_repeat 1 48 0 6 832 595 282 0 95 chr5 32433225 32433425 -120103834 - ID_B1 SINE B4 -17 207 27 6 832 351 0 0 0 chr5 32433840 32433879 -120103380 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 832 1689 197 45 50 chr5 32433894 32434294 -120102965 + MTD LTR MaLR 21 418 -1 6 832 264 182 36 0 chr5 32436467 32436522 -120100737 - MIR3 SINE MIR -50 158 102 6 832 395 180 260 0 chr5 32436642 32436742 -120100517 + ID_B1 SINE B4 99 224 0 6 832 377 192 219 8 chr5 32436794 32436975 -120100284 - MIRc SINE MIR -8 200 3 6 832 273 29 0 0 chr5 32437068 32437102 -120100157 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 832 246 143 0 0 chr5 32437242 32437291 -120099968 + (A)n Simple_repeat Simple_repeat 1 49 0 6 832 365 0 22 0 chr5 32437307 32437352 -120099907 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 832 228 67 0 0 chr5 32437622 32437652 -120099607 + (T)n Simple_repeat Simple_repeat 1 30 0 7 832 21 0 0 0 chr5 32437687 32437708 -120099551 + GC_rich Low_complexity Low_complexity 1 21 0 7 832 254 211 28 0 chr5 32438051 32438122 -120099137 + CT-rich Low_complexity Low_complexity 2 74 0 7 832 192 182 0 0 chr5 32438289 32438333 -120098926 + GA-rich Low_complexity Low_complexity 2 45 0 7 832 270 198 20 20 chr5 32439317 32439415 -120097844 + T-rich Low_complexity Low_complexity 2 99 0 7 832 183 295 48 16 chr5 32440477 32440539 -120096720 - L2b LINE L2 -17 3358 3295 7 832 270 0 0 0 chr5 32442178 32442208 -120095051 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 832 21 36 0 0 chr5 32442505 32442533 -120094726 + AT_rich Low_complexity Low_complexity 1 28 0 7 832 314 365 32 55 chr5 32443095 32443315 -120093944 - MARNA DNA Mariner -105 481 267 7 832 234 81 0 0 chr5 32444343 32444380 -120092879 + (CCTG)n Simple_repeat Simple_repeat 1 37 0 7 832 333 285 108 14 chr5 32444944 32445083 -120092176 + MER58A DNA MER1_type 47 198 -26 7 832 321 333 69 7 chr5 32446307 32446452 -120090807 + MER5B DNA MER1_type 24 177 -1 7 832 277 294 0 0 chr5 32446666 32446717 -120090542 - ID4_ SINE ID -8 75 25 7 832 376 246 41 88 chr5 32446729 32446876 -120090383 - B1F SINE Alu -8 141 2 7 832 459 0 0 0 chr5 32447114 32447165 -120090094 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 832 334 362 84 23 chr5 32447450 32447665 -120089594 + MIRb SINE MIR 14 241 -27 7 832 297 274 75 75 chr5 32450654 32450788 -120086471 - MIR3 SINE MIR -15 193 60 7 832 183 42 0 0 chr5 32451310 32451334 -120085925 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 7 832 180 359 83 46 chr5 32451676 32451784 -120085475 + L2b LINE L2 3258 3369 -6 7 832 1097 128 0 6 chr5 32452243 32452424 -120084835 + (GGA)n Simple_repeat Simple_repeat 1 180 0 7 832 21 36 0 0 chr5 32454414 32454442 -120082817 + GC_rich Low_complexity Low_complexity 1 28 0 7 832 666 291 72 30 chr5 32454582 32454819 -120082440 + MIRb SINE MIR 17 263 -5 7 832 242 124 67 13 chr5 32458545 32458602 -120078657 - MIRm SINE MIR -23 253 188 7 832 300 244 0 0 chr5 32458965 32459055 -120078204 + (TG)n Simple_repeat Simple_repeat 2 91 0 7 832 25 0 0 0 chr5 32459243 32459268 -120077991 + AT_rich Low_complexity Low_complexity 1 25 0 7 832 22 0 0 0 chr5 32459571 32459593 -120077666 + AT_rich Low_complexity Low_complexity 1 22 0 7 832 207 208 54 54 chr5 32460864 32460920 -120076339 + MIR SINE MIR 24 79 -129 7 832 904 164 6 6 chr5 32461463 32461641 -120075618 + GA-rich Low_complexity Low_complexity 2 179 0 7 832 603 62 0 0 chr5 32462542 32462622 -120074637 + (TC)n Simple_repeat Simple_repeat 1 80 0 7 832 741 231 80 0 chr5 32462973 32463185 -120074074 - L1MB5 LINE L1 0 6174 5946 7 832 180 0 0 0 chr5 32463951 32463971 -120073288 + (CGTG)n Simple_repeat Simple_repeat 4 23 0 7 832 182 350 90 77 chr5 32464103 32464258 -120073001 - L2a LINE L2 -19 3407 3251 7 832 1673 239 52 22 chr5 32464415 32464822 -120072437 + MTD LTR MaLR 1 419 0 7 832 249 128 0 0 chr5 32465062 32465109 -120072150 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 832 233 360 27 73 chr5 32466444 32466501 -120070758 - MLT1J-int LTR MaLR -622 765 712 7 832 2649 155 19 2 chr5 32466501 32466914 -120070345 - MTC LTR MaLR 0 421 2 7 832 233 360 27 73 chr5 32466914 32467006 -120070253 - MLT1J-int LTR MaLR -676 711 623 7 832 288 327 38 47 chr5 32466975 32467081 -120070178 + B4 SINE B4 48 152 -140 7 832 424 210 118 20 chr5 32467022 32467124 -120070135 + PB1D9 SINE Alu 9 120 0 7 832 406 345 108 0 chr5 32467544 32467683 -120069576 + RSINE1 SINE B4 8 161 -4 7 832 713 261 37 66 chr5 32467760 32468138 -120069121 - Lx9 LINE L1 -24 7620 7254 7 832 7987 58 11 2 chr5 32468133 32469196 -120068063 + L1Md_F2 LINE L1 4514 5586 -297 7 832 8298 39 3 9 chr5 32469196 32470198 -120067061 + L1Md_F2 LINE L1 5587 6582 0 7 832 1561 215 43 36 chr5 32470211 32470630 -120066629 - Lx9 LINE L1 -374 7270 6849 7 832 267 281 0 0 chr5 32470792 32470849 -120066410 - RSINE1 SINE B4 0 165 109 7 832 436 259 79 64 chr5 32470841 32471043 -120066216 - LTR81B LTR ERV1? -1188 205 1 7 832 574 185 0 100 chr5 32471264 32471384 -120065875 - PB1D10 SINE Alu -9 108 1 7 832 636 291 212 6 chr5 32471459 32471784 -120065475 - Lx9 LINE L1 -201 7443 7052 7 832 236 30 0 29 chr5 32471911 32471945 -120065314 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 7 832 589 162 0 139 chr5 32471945 32472096 -120065163 - B1_Mus2 SINE Alu -13 134 5 7 832 419 278 35 69 chr5 32472700 32472718 -120064541 - ID_B1 SINE B4 -49 243 190 7 832 430 252 52 37 chr5 32472718 32472854 -120064405 - B1F1 SINE Alu -2 147 10 7 832 419 278 35 69 chr5 32472854 32472897 -120064362 - ID_B1 SINE B4 -49 189 50 7 832 1029 258 105 12 chr5 32473111 32473512 -120063747 + L1MC1 LINE L1 5890 6327 -6 7 832 935 294 83 0 chr5 32473522 32473774 -120063485 + B4A SINE B4 20 292 0 7 832 722 210 65 7 chr5 32475705 32475844 -120061415 + ID_B1 SINE B4 78 224 0 7 832 405 0 0 0 chr5 32476034 32476079 -120061180 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 832 1223 297 94 58 chr5 32476360 32477038 -120060221 - Lx9 LINE L1 -635 7009 6307 7 832 250 277 15 0 chr5 32477282 32477347 -120059912 + CT-rich Low_complexity Low_complexity 3 68 0 7 832 857 75 0 0 chr5 32477471 32477578 -120059681 + U6 snRNA snRNA 1 107 0 7 832 4765 86 6 11 chr5 32477578 32478223 -120059036 + L1_Mus4 LINE L1 5995 6636 0 7 832 457 138 14 38 chr5 32478229 32478344 -120058915 + PB1D7 SINE Alu 12 119 -1 7 832 467 287 152 23 chr5 32478357 32478744 -120058515 + MLT1D LTR MaLR 5 505 0 7 832 461 262 39 84 chr5 32478827 32479006 -120058253 - MLT1B LTR MaLR -41 349 179 7 832 752 86 42 18 chr5 32479025 32479190 -120058069 + (TCC)n Simple_repeat Simple_repeat 3 171 0 7 832 505 278 109 22 chr5 32479190 32479374 -120057885 - MLT1B LTR MaLR -186 204 5 7 832 249 278 29 0 chr5 32479428 32479505 -120057754 - MIR SINE MIR -138 138 60 7 832 228 262 65 16 chr5 32479569 32479631 -120057628 - ID4 SINE ID -17 66 2 7 832 430 259 69 35 chr5 32479652 32479796 -120057463 - B1F2 SINE Alu 0 149 1 7 832 686 137 15 0 chr5 32480572 32480703 -120056556 + (CATA)n Simple_repeat Simple_repeat 4 136 0 7 832 444 343 69 72 chr5 32480747 32480798 -120056461 + RMER13A LTR ERVK 32 74 -786 7 832 2836 47 7 149 chr5 32480798 32481249 -120056010 - RLTR10 LTR ERVK -3 387 1 7 832 444 287 82 101 chr5 32481249 32481711 -120055548 + RMER13A LTR ERVK 75 557 -70 7 832 296 340 20 10 chr5 32481817 32481915 -120055344 + RMER13A LTR ERVK 514 612 -15 7 832 584 215 0 33 chr5 32481985 32482168 -120055091 + (CA)n Simple_repeat Simple_repeat 1 177 0 7 832 627 170 0 0 chr5 32482236 32482330 -120054929 - B1_Mur3 SINE Alu -14 135 42 7 832 360 318 27 55 chr5 32482478 32482661 -120054598 - L3 LINE CR1 -56 4433 4256 7 832 491 241 95 0 chr5 32483034 32483150 -120054109 + MTEa LTR MaLR 1 127 -252 7 832 182 118 29 0 chr5 32483195 32483229 -120054030 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 7 832 1188 90 0 0 chr5 32483229 32483396 -120053863 + (GGGAA)n Simple_repeat Simple_repeat 4 170 0 7 832 1547 217 104 3 chr5 32483396 32483734 -120053525 - MTD LTR MaLR -46 373 2 7 832 846 225 19 139 chr5 32483736 32483994 -120053265 + MTEa LTR MaLR 153 379 0 7 832 190 299 25 49 chr5 32484053 32484134 -120053125 + MIRc SINE MIR 172 250 -18 7 832 278 102 34 0 chr5 32485180 32485239 -120052020 + (TCTCTG)n Simple_repeat Simple_repeat 6 66 0 7 832 330 148 25 57 chr5 32486100 32486222 -120051037 + C-rich Low_complexity Low_complexity 3 120 0 7 832 353 269 111 0 chr5 32489783 32489891 -120047368 + PB1D7 SINE Alu 1 120 0 7 832 1173 314 85 22 chr5 32490127 32490904 -120046355 - L1ME2 LINE L1 -10 6154 5329 7 832 30 0 0 0 chr5 32490906 32490936 -120046323 + AT_rich Low_complexity Low_complexity 1 30 0 7 832 24 0 0 0 chr5 32490949 32490973 -120046286 + AT_rich Low_complexity Low_complexity 1 24 0 7 832 372 288 9 43 chr5 32490973 32491089 -120046170 - PB1D10 SINE Alu -5 112 1 7 832 545 213 28 9 chr5 32491235 32491344 -120045915 - B1F SINE Alu -5 144 34 7 832 459 0 0 0 chr5 32491380 32491431 -120045828 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 832 411 130 0 0 chr5 32491662 32491739 -120045520 + (TG)n Simple_repeat Simple_repeat 1 77 0 7 832 913 281 97 0 chr5 32491741 32491969 -120045290 - B4A SINE B4 -20 272 23 7 832 220 351 45 140 chr5 32492029 32492080 -120045179 + B4A SINE B4 58 219 -73 7 832 391 323 39 8 chr5 32492080 32492208 -120045051 + B1F1 SINE Alu 10 141 -8 7 832 225 260 20 0 chr5 32492225 32492275 -120044984 + ID4 SINE ID 14 64 -19 7 832 384 347 99 32 chr5 32492283 32492651 -120044608 - L1M2 LINE L1 -1098 5048 4645 7 832 227 318 100 22 chr5 32493006 32493096 -120044163 + MamGypLTR1c LTR Gypsy 491 587 -216 7 832 436 289 9 19 chr5 32493441 32493547 -120043712 - PB1D10 SINE Alu -8 109 5 7 832 289 341 116 10 chr5 32494268 32494475 -120042784 - RLTR21 LTR ERVK -176 1396 1168 7 832 270 281 65 37 chr5 32495297 32495404 -120041855 - PB1D10 SINE Alu -7 110 1 7 832 578 198 121 0 chr5 32496111 32496227 -120041032 - ID_B1 SINE B4 0 224 95 7 832 677 211 34 27 chr5 32496293 32496439 -120040820 - B1F1 SINE Alu -2 147 1 7 832 262 210 62 46 chr5 32496500 32496565 -120040694 + MLT1B LTR MaLR 286 351 -39 7 832 297 352 56 70 chr5 32496812 32497026 -120040233 - MER121 Unknown Unknown -120 292 82 7 832 270 56 0 0 chr5 32497801 32497837 -120039422 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 832 392 282 231 0 chr5 32497843 32497960 -120039299 - RSINE1 SINE B4 -18 147 4 8 832 221 149 0 41 chr5 32498067 32498116 -120039143 + C-rich Low_complexity Low_complexity 3 49 0 8 832 230 286 175 18 chr5 32498282 32498396 -120038863 + L2b LINE L2 3244 3375 0 8 832 214 292 0 15 chr5 32498552 32498618 -120038641 + CT-rich Low_complexity Low_complexity 2 66 0 8 832 423 0 0 0 chr5 32498955 32499002 -120038257 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 832 519 279 8 8 chr5 32499065 32499188 -120038071 + RSINE1 SINE B4 5 127 -38 8 832 231 193 298 0 chr5 32499288 32499345 -120037914 + B1F SINE Alu 27 100 -49 8 832 24 0 0 0 chr5 32499381 32499405 -120037854 + AT_rich Low_complexity Low_complexity 1 24 0 8 832 253 355 64 27 chr5 32499629 32499739 -120037520 - MER94 DNA AcHobo -7 127 14 8 832 231 328 16 0 chr5 32500408 32500469 -120036790 - BLACKJACK DNA AcHobo -2880 64 3 1 832 607 283 21 48 chr5 32501938 32502127 -120035132 + MIR SINE MIR 32 215 -47 2 832 314 325 57 0 chr5 32502224 32502347 -120034912 - L2a LINE L2 -2 3424 3295 3 832 382 274 21 10 chr5 32502563 32502659 -120034600 - MIRb SINE MIR -103 165 69 4 832 357 169 0 78 chr5 32502656 32502733 -120034526 - L2a LINE L2 -2 3424 3354 5 832 227 54 27 0 chr5 32503177 32503214 -120034045 + (TTAG)n Simple_repeat Simple_repeat 4 41 0 6 832 888 262 5 43 chr5 32503216 32503427 -120033832 - B4 SINE B4 -88 204 2 7 832 521 193 43 7 chr5 32503971 32504112 -120033147 - Lx9 LINE L1 -22 7622 7477 8 832 331 154 62 62 chr5 32504128 32504225 -120033034 - Lx9 LINE L1 -130 7514 7418 9 832 461 209 47 0 chr5 32504244 32504330 -120032929 - Lx9 LINE L1 -363 7281 7192 9 832 333 0 0 0 chr5 32504338 32504375 -120032884 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 1 832 571 53 0 13 chr5 32504375 32504444 -120032815 - B1_Mus2 SINE Alu -12 135 67 1 832 364 198 0 85 chr5 32504444 32504460 -120032799 - ID_B1 SINE B4 -12 212 134 1 832 261 0 0 0 chr5 32504461 32504490 -120032769 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1 832 1075 69 14 0 chr5 32504513 32504657 -120032602 - B1_Mus1 SINE Alu -1 147 2 1 832 2420 211 53 23 chr5 32504657 32505079 -120032180 - Lx9 LINE L1 -447 7197 6763 9 832 330 26 0 0 chr5 32505079 32505118 -120032141 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 832 2420 211 53 23 chr5 32505118 32505223 -120032036 - Lx9 LINE L1 -882 6762 6655 9 832 1067 253 74 110 chr5 32505294 32505792 -120031467 - RLTR12B LTR ERVK -29 499 20 1 12 1736 232 6 6 chr5 32505792 32506135 -120031124 - Lx9 LINE L1 -1006 6638 6296 9 833 465 66 0 0 chr5 32506208 32506269 -120030990 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 833 270 241 126 49 chr5 32506543 32506686 -120030573 - L1MC1 LINE L1 -300 6044 5872 1 833 207 0 0 0 chr5 32506686 32506709 -120030550 + (CTAA)n Simple_repeat Simple_repeat 2 24 0 1 833 390 74 0 0 chr5 32506709 32506762 -120030497 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 833 534 217 0 0 chr5 32506797 32506963 -120030296 + (CA)n Simple_repeat Simple_repeat 1 166 0 2 833 246 281 20 40 chr5 32506972 32507072 -120030187 - L1MC1 LINE L1 -1918 5867 5770 1 833 556 247 33 59 chr5 32507691 32507884 -120029375 + L1MB3 LINE L1 5749 5934 -249 2 833 309 233 106 43 chr5 32507887 32507981 -120029278 - Tigger5 DNA MER2_type -13 2393 2294 2 833 2453 174 236 30 chr5 32508310 32508919 -120028340 - RMER19A LTR ERVK 0 737 3 2 833 396 0 0 0 chr5 32509582 32509626 -120027633 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 833 769 281 132 43 chr5 32510574 32511110 -120026149 - Lx9 LINE L1 -24 7620 7037 2 833 788 78 149 37 chr5 32511317 32511435 -120025824 + B1_Mur3 SINE Alu 1 136 -13 2 833 297 0 0 0 chr5 32511435 32511468 -120025791 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 833 788 78 149 37 chr5 32511468 32511483 -120025776 + B1_Mur3 SINE Alu 137 149 0 2 833 261 0 0 0 chr5 32511659 32511688 -120025571 + (T)n Simple_repeat Simple_repeat 1 29 0 2 833 722 223 7 20 chr5 32512728 32512879 -120024380 - B1_Mur1 SINE Alu 0 149 1 2 833 558 0 0 0 chr5 32512924 32512986 -120024273 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 833 270 0 0 0 chr5 32512987 32513017 -120024242 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 833 637 308 56 67 chr5 32513040 32513325 -120023934 - B4A SINE B4 -4 288 7 3 833 360 138 0 0 chr5 32513968 32514033 -120023226 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 833 849 228 6 11 chr5 32514038 32514220 -120023039 - B3A SINE B2 -17 181 1 3 833 2326 158 39 2 chr5 32514446 32514852 -120022407 - MTC LTR MaLR 0 421 1 3 833 234 91 0 0 chr5 32515146 32515179 -120022080 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 833 459 208 25 0 chr5 32515909 32516025 -120021234 + PB1D10 SINE Alu 1 126 -21 3 833 279 0 0 0 chr5 32516590 32516621 -120020638 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 3 833 215 231 56 84 chr5 32516730 32516801 -120020458 - L4 LINE RTE -591 1438 1370 3 833 24 77 0 0 chr5 32516828 32516880 -120020379 + AT_rich Low_complexity Low_complexity 1 52 0 4 833 193 306 89 70 chr5 32516880 32517038 -120020221 + MIRb SINE MIR 40 200 -68 4 833 185 350 111 22 chr5 32517306 32517531 -120019728 - L2 LINE L2 -375 3044 2800 4 833 219 300 29 0 chr5 32517613 32517683 -120019576 + L2 LINE L2 2742 2813 -606 4 833 207 88 0 0 chr5 32517932 32517966 -120019293 + (TC)n Simple_repeat Simple_repeat 2 35 0 4 833 728 236 118 0 chr5 32518004 32518182 -120019077 - B3 SINE B2 -12 204 6 4 833 1193 62 0 0 chr5 32518211 32518357 -120018902 + B1_Mm SINE Alu 2 147 0 4 833 2828 142 45 13 chr5 32518363 32518458 -120018801 - RMER1A Other Other -17 1013 915 4 833 261 0 0 0 chr5 32518458 32518487 -120018772 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 833 2828 142 45 13 chr5 32518487 32518861 -120018398 - RMER1A Other Other -116 914 529 4 833 665 197 71 65 chr5 32518990 32519158 -120018101 + RMER13A LTR ERVK 152 320 -540 4 833 2321 213 88 40 chr5 32519161 32520413 -120016846 - RMER1A Other Other -493 537 1 4 833 2442 182 26 33 chr5 32520466 32520920 -120016339 - RMER13B LTR ERVK -277 631 181 5 833 590 257 43 36 chr5 32520913 32521137 -120016122 - RLTR26 LTR ERVK -372 270 12 5 833 1047 79 0 0 chr5 32521688 32521828 -120015431 - B2_Mm1t SINE B2 -1 192 53 5 833 1597 166 23 65 chr5 32521830 32522139 -120015120 + ORR1B1 LTR MaLR 91 386 -8 5 833 245 287 79 75 chr5 32522142 32522421 -120014838 - L1MEb LINE L1 -4968 1232 953 5 833 665 211 18 49 chr5 32522592 32522756 -120014503 + RSINE1 SINE B4 3 161 -4 5 833 612 40 0 0 chr5 32522759 32522834 -120014425 + (TC)n Simple_repeat Simple_repeat 2 76 0 5 833 349 348 114 63 chr5 32522834 32523150 -120014109 - L1MEb LINE L1 -5392 702 371 5 833 207 0 0 0 chr5 32523313 32523336 -120013923 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 5 833 294 339 124 16 chr5 32523674 32523923 -120013336 - L2 LINE L2 -1120 2299 2024 5 833 293 0 27 0 chr5 32524037 32524074 -120013185 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 833 2074 145 34 50 chr5 32524230 32524614 -120012645 - ORR1C1 LTR MaLR 0 378 1 6 833 198 200 20 20 chr5 32524868 32524919 -120012340 - L2 LINE L2 -356 3063 3013 6 833 212 204 0 39 chr5 32525156 32525207 -120012052 + CT-rich Low_complexity Low_complexity 3 51 0 6 833 525 239 8 8 chr5 32525207 32525218 -120012041 - B1_Mur2 SINE Alu 0 149 139 6 833 189 0 0 0 chr5 32525218 32525239 -120012020 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 833 525 243 17 8 chr5 32525239 32525364 -120011895 - B1_Mur2 SINE Alu -11 138 5 6 833 449 204 45 0 chr5 32525456 32525544 -120011715 + B4A SINE B4 1 92 -200 6 833 728 285 14 0 chr5 32525548 32525692 -120011567 + RSINE1 SINE B4 3 148 -17 6 833 915 261 43 0 chr5 32525762 32525946 -120011313 + B4A SINE B4 81 272 -20 6 833 822 232 20 12 chr5 32525966 32526279 -120010980 - MTEa LTR MaLR 0 379 27 6 833 2021 155 3 19 chr5 32526422 32526745 -120010514 + ORR1A3 LTR MaLR 1 318 -8 6 833 416 108 62 0 chr5 32526742 32526807 -120010452 - ORR1D1 LTR MaLR -28 346 278 6 833 259 286 0 0 chr5 32526815 32526871 -120010388 - MTEa LTR MaLR -323 56 1 6 833 1500 196 92 15 chr5 32526943 32527269 -120009990 + MTEa LTR MaLR 14 364 -15 7 833 6381 35 0 0 chr5 32527322 32528063 -120009196 - L1Md_T LINE L1 0 6582 5842 7 833 1763 187 74 37 chr5 32528482 32528888 -120008371 + MTC LTR MaLR 1 421 0 7 833 21 36 0 0 chr5 32529808 32529836 -120007423 + AT_rich Low_complexity Low_complexity 1 28 0 7 833 477 0 0 0 chr5 32530010 32530063 -120007196 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 833 468 0 0 0 chr5 32530063 32530115 -120007144 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 833 636 275 59 45 chr5 32530119 32530321 -120006938 - B4 SINE B4 -85 207 3 7 833 362 304 43 27 chr5 32530739 32530925 -120006334 + Lx8 LINE L1 5724 5912 -1561 7 833 208 191 21 0 chr5 32532253 32532300 -120004959 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 7 833 180 77 0 0 chr5 32532648 32532674 -120004585 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 7 833 935 143 0 0 chr5 32532677 32532810 -120004449 - B1_Mus1 SINE Alu -1 147 15 8 833 361 258 88 54 chr5 32532855 32533060 -120004199 - B3 SINE B2 0 216 5 8 833 491 274 60 54 chr5 32533080 32533246 -120004013 - B4 SINE B4 -120 172 6 8 833 588 162 0 0 chr5 32533275 32533380 -120003879 + GA-rich Low_complexity Low_complexity 3 107 0 8 833 2683 72 55 13 chr5 32533425 32533805 -120003454 - MTA_Mm LTR MaLR 0 396 1 8 833 204 40 0 0 chr5 32534918 32534943 -120002316 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 833 229 319 63 89 chr5 32535792 32535950 -120001309 + LTR81B LTR ERV1? 492 645 -748 8 833 403 318 34 76 chr5 32536131 32536250 -120001009 - B4A SINE B4 -169 123 10 8 833 271 212 42 17 chr5 32536473 32536554 -120000705 - PB1D10 SINE Alu -20 100 8 8 833 339 280 126 161 chr5 32536886 32537116 -120000143 + ID_B1 SINE B4 1 222 -2 8 833 2224 152 65 15 chr5 32538139 32538540 -119998719 - MTC LTR MaLR 0 421 1 9 833 361 161 11 11 chr5 32539078 32539166 -119998093 + CT-rich Low_complexity Low_complexity 3 90 0 9 833 333 0 0 0 chr5 32540020 32540057 -119997202 + (CAG)n Simple_repeat Simple_repeat 2 38 0 9 833 562 168 0 53 chr5 32540549 32540738 -119996521 + (TG)n Simple_repeat Simple_repeat 2 180 0 9 833 180 319 66 71 chr5 32540746 32540915 -119996344 - L2 LINE L2 -467 2952 2781 9 833 615 27 0 0 chr5 32540915 32540988 -119996271 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 9 833 180 319 66 71 chr5 32540988 32541000 -119996259 - L2 LINE L2 -639 2780 2772 9 833 217 391 16 8 chr5 32541236 32541365 -119995894 - L2 LINE L2 -993 2426 2297 9 833 258 275 196 76 chr5 32541379 32541603 -119995656 - L2 LINE L2 -1222 2197 1947 9 833 276 30 0 0 chr5 32542019 32542052 -119995207 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 9 833 494 274 0 8 chr5 32542059 32542177 -119995082 + PB1D10 SINE Alu 1 117 0 9 833 364 301 52 8 chr5 32542274 32542408 -119994851 + B4 SINE B4 153 292 0 9 833 437 186 48 4 chr5 32542408 32542678 -119994581 + (CA)n Simple_repeat Simple_repeat 1 282 0 9 833 212 254 25 8 chr5 32542708 32542827 -119994432 + (CA)n Simple_repeat Simple_repeat 2 122 0 9 833 583 220 12 0 chr5 32542840 32543013 -119994246 + (CA)n Simple_repeat Simple_repeat 2 176 0 9 833 211 320 88 25 chr5 32544176 32544256 -119993003 + MIRc SINE MIR 60 144 -124 1 833 243 282 113 15 chr5 32544311 32544444 -119992815 + MIRc SINE MIR 17 162 -106 1 833 202 330 105 11 chr5 32546184 32546279 -119990980 - L2b LINE L2 0 3375 3272 1 833 355 287 70 0 chr5 32547452 32547581 -119989678 + B1F SINE Alu 1 138 -11 1 833 4136 39 2 89 chr5 32548663 32549224 -119988035 + RLTR1B LTR ERV1 1 512 0 1 833 204 240 53 45 chr5 32550182 32550264 -119986995 + MIRc SINE MIR 70 150 -58 1 833 269 213 63 51 chr5 32550264 32550343 -119986916 + ID4_ SINE ID 3 82 -1 1 833 629 283 94 55 chr5 32550977 32551231 -119986028 - MER89 LTR ERV1 0 559 296 1 833 824 144 222 27 chr5 32551224 32551409 -119985850 + URR1B DNA MER1_type 5 225 0 1 833 512 281 175 65 chr5 32551530 32552067 -119985192 - L1M5 LINE L1 -1016 5130 4535 1 833 27 29 0 0 chr5 32552170 32552204 -119985055 + AT_rich Low_complexity Low_complexity 1 34 0 1 833 579 324 42 55 chr5 32552718 32553080 -119984179 - RLTR16 LTR ERVK -253 439 32 1 833 726 267 39 56 chr5 32553092 32553326 -119983933 - B4A SINE B4 -62 230 1 1 833 267 31 0 0 chr5 32553424 32553456 -119983803 + (CAT)n Simple_repeat Simple_repeat 2 33 0 1 833 193 49 0 89 chr5 32553479 32553524 -119983735 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 1 833 371 268 128 110 chr5 32553525 32553806 -119983453 - B4A SINE B4 0 292 7 1 833 1077 106 0 0 chr5 32553813 32553993 -119983266 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 833 327 326 17 28 chr5 32554185 32554341 -119982918 - MLT1H LTR MaLR -5 586 440 1 833 24 0 0 0 chr5 32554483 32554507 -119982752 + AT_rich Low_complexity Low_complexity 1 24 0 1 833 555 124 0 33 chr5 32554529 32554621 -119982638 - B3 SINE B2 -125 91 3 1 833 826 230 12 136 chr5 32554775 32555026 -119982233 + B4A SINE B4 2 221 -71 1 833 270 0 0 0 chr5 32555151 32555181 -119982078 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 833 307 0 0 44 chr5 32555713 32555758 -119981501 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 1 833 304 237 148 40 chr5 32556259 32556360 -119980899 - MER2 DNA MER2_type -233 112 1 1 833 891 273 65 68 chr5 32558594 32558948 -119978311 - ORR1E LTR MaLR -5 354 2 1 833 473 139 35 0 chr5 32559516 32559602 -119977657 + URR1B DNA MER1_type 130 218 -7 1 833 348 333 0 45 chr5 32559791 32559923 -119977336 - MIRc SINE MIR -54 214 89 1 833 1177 183 14 23 chr5 32561019 32561237 -119976022 + B3 SINE B2 1 216 0 1 833 180 111 0 0 chr5 32561240 32561267 -119975992 + (A)n Simple_repeat Simple_repeat 1 27 0 1 833 518 285 54 60 chr5 32561293 32561607 -119975652 - Lx8 LINE L1 -2 7471 7160 1 833 264 333 0 0 chr5 32561612 32561681 -119975578 - MIRb SINE MIR -89 179 111 1 833 345 264 10 117 chr5 32562119 32562222 -119975037 + MER58B DNA MER1_type 6 97 -244 1 833 806 257 117 4 chr5 32562224 32562505 -119974754 - L1MC LINE L1 -1216 4930 4618 1 833 344 367 108 58 chr5 32562508 32562748 -119974511 + MER58B DNA MER1_type 80 331 -10 1 833 311 298 128 49 chr5 32562824 32563018 -119974241 + MIR SINE MIR 36 248 -20 1 833 267 250 16 107 chr5 32563721 32563842 -119973417 + MT2B LTR ERVL 154 263 -338 1 833 649 250 8 0 chr5 32563740 32563864 -119973395 + B1_Mur1 SINE Alu 7 131 -18 1 833 928 269 17 25 chr5 32564401 32564616 -119972643 + B4A SINE B4 55 270 -22 1 833 267 31 0 0 chr5 32564616 32564648 -119972611 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 833 928 269 17 25 chr5 32564648 32564672 -119972587 + B4A SINE B4 271 292 0 1 833 372 18 53 0 chr5 32564820 32564877 -119972382 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 833 956 96 41 0 chr5 32566261 32566407 -119970852 + URR1A DNA MER1_type 75 226 0 1 833 405 0 0 0 chr5 32566656 32566701 -119970558 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 833 601 246 16 0 chr5 32567426 32567552 -119969707 + ID_B1 SINE B4 84 211 -13 1 833 535 347 51 75 chr5 32567951 32568322 -119968937 - L1MA4A LINE L1 -376 5927 5566 1 833 833 218 15 45 chr5 32568421 32568623 -119968636 + B3 SINE B2 2 197 -19 1 833 432 321 149 8 chr5 32568937 32569185 -119968074 + Lx7 LINE L1 5622 5904 -1792 1 833 772 286 90 48 chr5 32569302 32569667 -119967592 - L1MB4 LINE L1 -308 5992 5599 1 833 463 281 44 7 chr5 32569667 32569803 -119967456 + B1F SINE Alu 1 141 -8 1 833 772 281 37 19 chr5 32569803 32569919 -119967340 - L1MB4 LINE L1 -582 5598 5455 1 833 629 191 102 78 chr5 32570035 32570240 -119967019 - B3 SINE B2 -6 210 1 1 833 1186 97 26 41 chr5 32570328 32570488 -119966771 - ORR1A2 LTR MaLR -2 325 163 1 833 536 0 16 0 chr5 32570488 32570552 -119966707 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 833 1186 97 26 41 chr5 32570552 32570585 -119966674 - ORR1A2 LTR MaLR -165 162 135 1 833 277 325 52 37 chr5 32571751 32571885 -119965374 - L2a LINE L2 -4 3422 3287 1 833 185 311 152 19 chr5 32572276 32572381 -119964878 - MIR SINE MIR -60 148 30 1 833 639 0 0 0 chr5 32573156 32573227 -119964032 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 833 278 311 12 55 chr5 32574181 32574326 -119962933 - MIRc SINE MIR -126 150 14 1 833 213 246 0 0 chr5 32574534 32574599 -119962660 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 833 191 287 108 62 chr5 32575092 32575222 -119962037 + MIR3 SINE MIR 15 150 -58 1 833 290 336 64 28 chr5 32576181 32576322 -119960937 + MIRb SINE MIR 79 224 -44 1 833 936 282 25 12 chr5 32576395 32576639 -119960620 + B4A SINE B4 4 250 -42 1 833 495 33 0 0 chr5 32576640 32576701 -119960558 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 833 1247 241 33 48 chr5 32576705 32577037 -119960222 - MTEa LTR MaLR -28 351 25 1 833 261 257 70 44 chr5 32577037 32577151 -119960108 + PB1D7 SINE Alu 3 119 -1 1 833 338 339 0 41 chr5 32577247 32577370 -119959889 - MIR3 SINE MIR -52 156 39 1 833 264 270 62 89 chr5 32577782 32577802 -119959457 - YREP_Mm Unknown Unknown -1482 330 161 1 833 455 283 26 65 chr5 32577802 32577957 -119959302 + B1F1 SINE Alu 1 149 0 1 833 368 229 29 0 chr5 32577967 32578037 -119959222 + ID4_ SINE ID 12 83 0 1 833 539 180 9 0 chr5 32578148 32578259 -119959000 + GA-rich Low_complexity Low_complexity 1 112 0 1 833 240 228 105 0 chr5 32578272 32578329 -119958930 + ID_B1 SINE B4 91 153 -71 1 833 555 16 0 0 chr5 32578670 32578734 -119958525 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 1 833 272 161 0 0 chr5 32578795 32578847 -119958412 - L1MB2 LINE L1 -2 6178 6116 1 833 405 0 0 0 chr5 32579027 32579072 -119958187 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 1 833 1477 290 81 29 chr5 32579148 32579979 -119957280 - L1MA6 LINE L1 -286 6014 5104 1 833 23 0 0 0 chr5 32582865 32582888 -119954371 + AT_rich Low_complexity Low_complexity 1 23 0 1 833 243 0 0 0 chr5 32582894 32582921 -119954338 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 833 231 103 0 0 chr5 32582921 32582960 -119954299 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 833 410 34 34 0 chr5 32584202 32584261 -119952998 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 1 833 2742 125 87 19 chr5 32584331 32584804 -119952455 - RLTR28 LTR ERVL -19 505 1 1 833 224 284 52 39 chr5 32584968 32585045 -119952214 + BC1_Mm scRNA scRNA 5 82 -70 1 833 720 262 73 21 chr5 32584984 32585175 -119952084 + ID_B1 SINE B4 19 219 -5 1 833 949 177 294 16 chr5 32585560 32585883 -119951376 + MTC LTR MaLR 1 413 -8 1 833 2674 187 89 54 chr5 32585885 32586548 -119950711 + MTC-int LTR MaLR 1 686 -572 1 833 504 212 26 0 chr5 32586556 32586669 -119950590 + MTC-int LTR MaLR 1143 1258 0 1 833 1857 159 92 42 chr5 32586669 32587070 -119950189 + MTC LTR MaLR 1 421 0 1 833 187 361 14 0 chr5 32587987 32588059 -119949200 - L2c LINE L2 -42 3345 3273 1 833 360 189 0 0 chr5 32588343 32588417 -119948842 + CT-rich Low_complexity Low_complexity 1 74 0 1 833 374 332 32 29 chr5 32588521 32588706 -119948553 + MIR SINE MIR 3 180 -82 1 833 781 156 164 127 chr5 32589932 32590013 -119947246 - URR1B DNA MER1_type -2 223 154 1 833 633 226 43 21 chr5 32590013 32590153 -119947106 + B1_Mur4 SINE Alu 2 144 -6 1 833 781 156 164 127 chr5 32590153 32590284 -119946975 - URR1B DNA MER1_type -72 153 3 1 833 219 85 64 0 chr5 32590708 32590755 -119946504 + (TCTCCC)n Simple_repeat Simple_repeat 5 54 0 1 833 359 266 0 69 chr5 32590763 32590864 -119946395 - B1_Mus2 SINE Alu -51 96 3 1 833 681 230 25 62 chr5 32590864 32590944 -119946315 - ID SINE ID -149 75 2 1 833 468 91 0 0 chr5 32591019 32591085 -119946174 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 833 1280 111 126 0 chr5 32591429 32591628 -119945631 + URR1A DNA MER1_type 3 226 0 1 833 240 373 79 0 chr5 32592735 32592861 -119944398 + L4 LINE RTE 1684 1819 -210 1 833 327 352 88 28 chr5 32594406 32594622 -119942637 + MIR SINE MIR 34 262 0 1 833 296 401 61 9 chr5 32594784 32595013 -119942246 - L2c LINE L2 -59 3328 3088 1 833 215 350 31 127 chr5 32595167 32595458 -119941801 - L2b LINE L2 -3 3372 3110 1 833 734 193 59 7 chr5 32596135 32596271 -119940988 - B1_Mur4 SINE Alu 0 150 8 1 833 358 212 51 154 chr5 32596766 32596829 -119940430 + MT2B LTR ERVL 118 182 -419 1 833 225 0 0 0 chr5 32596829 32596854 -119940405 + (TGG)n Simple_repeat Simple_repeat 2 26 0 1 833 358 212 51 154 chr5 32596854 32596946 -119940313 + MT2B LTR ERVL 183 257 -344 1 833 733 146 23 47 chr5 32596946 32596983 -119940276 + B1_Mur4 SINE Alu 19 144 -6 1 833 252 0 0 0 chr5 32596985 32597013 -119940246 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 833 234 262 90 53 chr5 32597372 32597505 -119939754 - ORR1E LTR MaLR -218 141 4 1 833 938 64 16 0 chr5 32599122 32599247 -119938012 - B1_Mus2 SINE Alu -20 127 1 1 833 300 275 99 82 chr5 32599573 32599755 -119937504 - B3A SINE B2 -2 196 12 2 833 533 282 44 19 chr5 32599608 32599767 -119937492 - RSINE1 SINE B4 -2 163 1 2 833 234 0 0 0 chr5 32599974 32600000 -119937259 + (T)n Simple_repeat Simple_repeat 1 26 0 2 833 342 235 190 61 chr5 32600457 32600620 -119936639 + MER5A DNA MER1_type 3 186 -3 2 833 394 303 28 80 chr5 32600972 32600996 -119936263 + YREP_Mm Unknown Unknown 165 221 -1591 2 833 775 206 0 0 chr5 32600996 32601127 -119936132 - ID_B1 SINE B4 -8 216 86 2 833 394 303 28 80 chr5 32601127 32601184 -119936075 + YREP_Mm Unknown Unknown 222 365 -1447 2 833 1240 61 0 0 chr5 32601535 32601683 -119935576 + B1_Mus1 SINE Alu 1 148 0 2 833 225 0 0 0 chr5 32601683 32601708 -119935551 + (A)n Simple_repeat Simple_repeat 1 25 0 2 833 3173 127 111 11 chr5 32602767 32603309 -119933950 + ORR1A3-int LTR MaLR 45 640 -1323 2 833 4066 93 28 139 chr5 32603321 32604132 -119933127 + ORR1A4-int LTR MaLR 491 1962 -1 2 833 1585 93 73 246 chr5 32604133 32604531 -119932728 + ORR1A4 LTR MaLR 1 329 0 2 833 204 167 42 0 chr5 32606050 32606098 -119931161 + (GGGTG)n Simple_repeat Simple_repeat 2 51 0 2 833 1369 89 5 5 chr5 32606394 32606586 -119930673 - B2_Mm1a SINE B2 -1 192 1 2 833 324 150 0 0 chr5 32606704 32606784 -119930475 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 833 502 314 51 16 chr5 32607608 32608065 -119929194 + L1M2 LINE L1 2124 2613 -3936 2 833 536 303 179 35 chr5 32608073 32608463 -119928796 + L1M2 LINE L1 4194 4633 -2212 2 833 418 295 144 68 chr5 32608466 32608702 -119928557 - CYRA11_Mm Unknown Y-chromosome -192 425 172 2 833 943 160 168 16 chr5 32608512 32608703 -119928556 + URR1A DNA MER1_type 7 226 0 2 833 347 227 57 0 chr5 32608811 32608899 -119928360 + PB1D7 SINE Alu 25 117 -3 2 833 182 154 0 0 chr5 32610622 32610648 -119926611 - MIRc SINE MIR -154 114 89 2 833 216 331 161 19 chr5 32610759 32610977 -119926282 - MIR SINE MIR 0 268 15 2 833 325 263 26 0 chr5 32611052 32611128 -119926131 - ID4_ SINE ID -4 79 2 2 833 242 293 132 72 chr5 32611731 32611981 -119925278 - L2c LINE L2 -23 3364 3100 2 833 432 0 0 0 chr5 32612184 32612232 -119925027 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 833 873 156 5 9 chr5 32612430 32612645 -119924614 + CT-rich Low_complexity Low_complexity 1 213 0 2 833 369 0 0 0 chr5 32612650 32612691 -119924568 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 2 833 468 0 0 0 chr5 32612691 32612743 -119924516 + (TTTC)n Simple_repeat Simple_repeat 3 54 0 2 833 642 259 0 0 chr5 32612746 32612885 -119924374 - B1_Mus2 SINE Alu -6 141 3 2 833 270 0 0 0 chr5 32614509 32614539 -119922720 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 833 933 106 28 14 chr5 32614539 32614671 -119922588 - B1_Mm SINE Alu -11 136 2 2 833 1742 120 35 35 chr5 32614671 32614956 -119922303 - ORR1A3 LTR MaLR -41 285 1 2 833 835 272 84 13 chr5 32615276 32615503 -119921756 + B4A SINE B4 42 284 -8 2 833 182 132 0 50 chr5 32615527 32615567 -119921692 + CT-rich Low_complexity Low_complexity 1 38 0 2 833 230 213 25 124 chr5 32617840 32617939 -119919320 + MIR SINE MIR 42 138 -130 2 833 267 263 35 0 chr5 32617956 32618013 -119919246 - ID4 SINE ID -23 60 2 2 833 805 278 10 40 chr5 32618025 32618224 -119919035 - ID_B1 SINE B4 0 224 32 2 833 370 282 117 0 chr5 32618244 32618347 -119918912 - PB1 SINE Alu -2 125 11 2 833 220 258 51 51 chr5 32618348 32618393 -119918866 + MIRb SINE MIR 127 172 -96 2 833 1125 95 0 7 chr5 32618393 32618541 -119918718 + B1_Mus1 SINE Alu 1 147 -1 2 833 220 258 51 51 chr5 32618541 32618593 -119918666 + MIRb SINE MIR 173 224 -44 2 833 207 100 0 0 chr5 32618615 32618645 -119918614 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2 833 318 80 0 0 chr5 32618772 32618822 -119918437 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 2 833 2039 164 21 58 chr5 32621432 32621813 -119915446 - ORR1B2 LTR MaLR 0 367 1 2 833 411 301 51 14 chr5 32623764 32623902 -119913357 - ID_B1 SINE B4 -1 223 81 2 833 24 32 0 0 chr5 32624023 32624054 -119913205 + AT_rich Low_complexity Low_complexity 1 31 0 2 833 251 237 188 31 chr5 32625582 32625678 -119911581 - MER103 DNA DNA -18 148 38 2 833 1085 186 71 9 chr5 32626057 32626269 -119910990 - URR1B DNA MER1_type 0 225 1 2 833 210 271 73 130 chr5 32627913 32627987 -119909272 + MIRb SINE MIR 27 102 -166 2 833 1278 162 18 5 chr5 32627987 32628210 -119909049 + URR1A DNA MER1_type 1 226 0 2 833 210 271 73 130 chr5 32628210 32628258 -119909001 + MIRb SINE MIR 103 142 -126 2 833 183 139 0 0 chr5 32628295 32628331 -119908928 + (G)n Simple_repeat Simple_repeat 1 36 0 2 833 230 266 94 0 chr5 32629515 32629579 -119907680 - L4 LINE RTE -178 1851 1782 2 833 213 256 279 0 chr5 32629638 32629724 -119907535 + PB1D10 SINE Alu 1 110 -7 2 833 1101 57 42 7 chr5 32629733 32629875 -119907384 + B1_Mus1 SINE Alu 1 147 -1 2 833 275 378 19 51 chr5 32630477 32630633 -119906626 + L3 LINE CR1 4329 4479 -10 2 833 1093 251 128 33 chr5 32634392 32634439 -119902820 - MTEa LTR MaLR -5 374 328 2 833 948 99 0 0 chr5 32634439 32634581 -119902678 + (GGAA)n Simple_repeat Simple_repeat 1 142 0 2 833 1093 251 128 33 chr5 32634581 32634870 -119902389 - MTEa LTR MaLR -52 327 6 2 833 196 143 36 0 chr5 32635497 32635553 -119901706 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 833 211 225 28 0 chr5 32635901 32635972 -119901287 + CT-rich Low_complexity Low_complexity 3 75 0 2 834 1252 282 14 21 chr5 32636937 32637223 -119900036 - B4A SINE B4 0 292 9 2 834 335 192 0 13 chr5 32639437 32639516 -119897743 + CT-rich Low_complexity Low_complexity 2 79 0 2 834 614 292 7 21 chr5 32641791 32641931 -119895328 - ID_B1 SINE B4 -7 217 80 2 834 428 229 8 14 chr5 32641928 32642035 -119895224 - PB1D7 SINE Alu -7 110 6 2 834 747 307 124 31 chr5 32642860 32643246 -119894013 + RMER5 LTR ERV1 45 466 -68 2 834 239 151 54 54 chr5 32643295 32643351 -119893908 + RMER5 LTR ERV1 479 534 0 2 834 423 0 0 0 chr5 32644058 32644105 -119893154 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 834 450 233 87 36 chr5 32645635 32645773 -119891486 - B1F SINE Alu 0 149 5 2 834 392 298 25 66 chr5 32645781 32645903 -119891356 - PB1D7 SINE Alu -2 118 2 2 834 462 349 74 0 chr5 32645903 32645967 -119891292 - ID SINE ID -142 82 8 2 834 195 100 0 0 chr5 32646003 32646033 -119891226 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 834 27 0 0 0 chr5 32646101 32646128 -119891131 + AT_rich Low_complexity Low_complexity 1 27 0 2 834 953 132 14 0 chr5 32646447 32646591 -119890668 + B1_Mus1 SINE Alu 2 147 -1 2 834 269 26 0 26 chr5 32646997 32647036 -119890223 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2 834 1099 49 21 0 chr5 32647039 32647181 -119890078 - B1_Mm SINE Alu -2 145 1 2 834 402 254 16 85 chr5 32647072 32647201 -119890058 - MT2B LTR ERVL -337 264 145 2 834 955 113 0 68 chr5 32647341 32647488 -119889771 + B1_Mur4 SINE Alu 1 138 -12 2 834 198 0 0 0 chr5 32647488 32647510 -119889749 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 2 834 955 113 0 68 chr5 32647510 32647523 -119889736 + B1_Mur4 SINE Alu 139 150 0 2 834 312 27 0 0 chr5 32649023 32649060 -119888199 + (TCC)n Simple_repeat Simple_repeat 3 39 0 2 834 239 133 0 22 chr5 32649199 32649245 -119888014 + CT-rich Low_complexity Low_complexity 2 46 0 2 834 624 271 78 11 chr5 32649380 32649559 -119887700 - B3A SINE B2 -6 192 2 2 834 503 278 58 26 chr5 32649570 32649725 -119887534 - RSINE1 SINE B4 -4 161 2 2 834 985 250 40 9 chr5 32649725 32649948 -119887311 - B4A SINE B4 -62 230 1 2 834 474 49 0 0 chr5 32649951 32650012 -119887247 + (TCCCC)n Simple_repeat Simple_repeat 2 62 0 2 834 532 311 62 22 chr5 32650226 32650453 -119886806 + MIR SINE MIR 24 259 -3 2 834 755 223 8 13 chr5 32651101 32651271 -119885988 - ID_B1 SINE B4 -43 249 82 2 834 303 273 28 48 chr5 32651282 32651429 -119885830 - L1MA10 LINE L1 0 6334 6217 2 834 359 258 89 32 chr5 32653408 32653532 -119883727 + Tigger16b DNA Tigger 206 336 -1 2 834 193 296 107 48 chr5 32654288 32654391 -119882868 + MIR SINE MIR 7 115 -147 2 834 309 261 45 0 chr5 32655704 32655792 -119881467 - ORR1E LTR MaLR -223 136 45 2 834 404 258 17 156 chr5 32657902 32658081 -119879178 - B4A SINE B4 -138 154 1 2 834 420 264 45 18 chr5 32658119 32658231 -119879028 - RSINE1 SINE B4 -40 125 11 2 834 584 246 45 15 chr5 32658269 32658401 -119878858 - RSINE1 SINE B4 -8 157 22 2 834 212 270 79 26 chr5 32658518 32658594 -119878665 + MIR SINE MIR 75 154 -108 2 834 1245 54 0 0 chr5 32658677 32658825 -119878434 + B1_Mus1 SINE Alu 1 148 0 2 834 212 295 148 0 chr5 32659461 32659522 -119877737 - PB1D10 SINE Alu -29 88 19 2 834 210 323 32 0 chr5 32659556 32659618 -119877641 - ID4_ SINE ID 0 83 20 2 834 274 296 160 14 chr5 32660268 32660412 -119876847 - MIR3 SINE MIR -9 199 35 2 834 213 229 62 0 chr5 32660750 32660798 -119876461 - MER5B DNA MER1_type 0 178 128 2 834 378 247 145 28 chr5 32660828 32661007 -119876252 + L1M5 LINE L1 5558 5757 -416 2 834 587 304 52 39 chr5 32661373 32661433 -119875826 + B3A SINE B2 25 83 -115 2 834 2096 170 62 15 chr5 32661433 32661833 -119875426 - MTD LTR MaLR 0 419 1 2 834 587 304 52 39 chr5 32661833 32661926 -119875333 + B3A SINE B2 84 180 -18 2 834 420 20 0 0 chr5 32661961 32662010 -119875249 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 834 290 242 116 152 chr5 32662078 32662190 -119875069 - PB1D9 SINE Alu -5 115 8 2 834 246 331 116 63 chr5 32662794 32663113 -119874146 - L2c LINE L2 -38 3349 3014 2 834 196 321 64 43 chr5 32663259 32663399 -119873860 - L2c LINE L2 -708 2711 2569 2 834 183 224 116 29 chr5 32663991 32664060 -119873199 + L2 LINE L2 2505 2579 -840 2 834 234 0 0 0 chr5 32664345 32664371 -119872888 + (CACAC)n Simple_repeat Simple_repeat 4 29 0 3 834 225 0 0 0 chr5 32665203 32665228 -119872031 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 3 834 1006 34 0 0 chr5 32665228 32665346 -119871913 - B1_Mm SINE Alu -10 137 20 3 834 797 88 2 1 chr5 32665346 32665459 -119871800 - B1_Mm SINE Alu -17 132 19 3 834 219 92 0 85 chr5 32666860 32666919 -119870340 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 3 834 2199 224 46 27 chr5 32667031 32667555 -119869704 - RLTR20C LTR ERVK 0 534 1 3 834 505 281 99 14 chr5 32668007 32668148 -119869111 + ID_B1 SINE B4 56 208 -16 3 834 2913 167 36 14 chr5 32668527 32669032 -119868227 + RMER20A LTR ERVK 1 516 0 3 834 256 262 16 0 chr5 32669119 32669180 -119868079 - Charlie7 DNA MER1_type -322 2290 2229 3 834 293 296 0 22 chr5 32669271 32669356 -119867903 - MER45R DNA Tip100 -1 1580 1502 3 834 617 247 51 13 chr5 32670284 32670440 -119866819 + RSINE1 SINE B4 3 164 -1 3 834 226 254 17 0 chr5 32670651 32670710 -119866549 - Charlie7 DNA MER1_type -368 2244 2185 3 834 267 103 0 0 chr5 32670815 32670854 -119866405 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 3 834 455 254 68 23 chr5 32670916 32671049 -119866210 - ID_B1 SINE B4 -7 217 79 3 834 395 297 93 92 chr5 32671162 32671461 -119865798 + B4A SINE B4 1 292 0 3 834 514 263 80 29 chr5 32671479 32671616 -119865643 + ID_B1 SINE B4 2 145 -79 3 834 1176 68 0 0 chr5 32671691 32671838 -119865421 + B1_Mus1 SINE Alu 2 148 0 3 834 540 153 110 20 chr5 32671840 32671940 -119865319 - B1_Mur4 SINE Alu -13 137 29 3 834 910 282 54 78 chr5 32671936 32672404 -119864855 - RLTR26 LTR ERVK -161 481 2 3 834 791 215 65 65 chr5 32673037 32673251 -119864008 - B3 SINE B2 0 216 3 3 834 213 135 0 55 chr5 32673271 32673326 -119863933 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 3 834 189 0 0 0 chr5 32673327 32673348 -119863911 + (T)n Simple_repeat Simple_repeat 1 21 0 3 834 895 63 158 0 chr5 32673357 32673484 -119863775 - B1_Mus1 SINE Alu 0 148 2 3 834 200 333 54 62 chr5 32673712 32673824 -119863435 + MER5A DNA MER1_type 43 153 -36 3 834 360 0 0 0 chr5 32673981 32674021 -119863238 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 834 309 155 169 0 chr5 32674657 32674728 -119862531 + Lx8 LINE L1 7384 7466 -7 3 834 449 323 93 21 chr5 32675754 32675947 -119861312 - B4A SINE B4 -2 290 84 3 834 813 184 0 28 chr5 32675944 32676089 -119861170 - B1_Mus2 SINE Alu -1 146 6 3 834 596 256 90 57 chr5 32675949 32676160 -119861099 - ID_B1 SINE B4 -4 220 3 3 834 327 239 33 22 chr5 32676243 32676333 -119860926 + PB1D10 SINE Alu 18 108 -9 3 834 249 298 0 0 chr5 32676625 32676681 -119860578 - MER5A DNA MER1_type -72 117 62 3 834 1497 212 98 23 chr5 32676681 32677029 -119860230 + MTE2b LTR MaLR 1 374 -5 3 834 355 255 87 19 chr5 32677087 32677191 -119860068 + MER5A DNA MER1_type 7 117 -72 3 834 1343 50 0 0 chr5 32677980 32678140 -119859119 + B2_Mm1a SINE B2 1 160 -33 3 834 225 0 0 0 chr5 32678140 32678165 -119859094 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3 834 825 260 59 20 chr5 32678196 32678400 -119858859 + ID_B1 SINE B4 8 219 -5 3 834 398 331 38 27 chr5 32679119 32679305 -119857954 + MIRc SINE MIR 81 268 0 3 834 289 286 55 0 chr5 32679677 32679768 -119857491 + MIRm SINE MIR 41 136 -140 3 834 864 257 44 111 chr5 32679905 32680203 -119857056 - B4A SINE B4 -14 278 1 3 834 286 167 19 0 chr5 32680247 32680301 -119856958 + MER5A1 DNA MER1_type 112 166 0 3 834 288 269 0 13 chr5 32681487 32681566 -119855693 + ID_B1 SINE B4 129 206 -18 3 834 184 91 0 43 chr5 32681641 32681687 -119855572 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 3 834 1177 76 0 0 chr5 32681688 32681833 -119855426 - B1_Mm SINE Alu -2 145 1 3 834 234 268 213 21 chr5 32683437 32683578 -119853681 - MER5A DNA MER1_type -18 171 4 3 834 1106 84 163 0 chr5 32683721 32683887 -119853372 + B2_Mm2 SINE B2 1 193 -2 3 834 1125 179 43 10 chr5 32683917 32684126 -119853133 + B3 SINE B2 1 216 0 3 834 221 196 30 15 chr5 32684903 32685038 -119852221 + (TCTCTG)n Simple_repeat Simple_repeat 6 142 0 3 834 522 31 0 0 chr5 32685045 32685109 -119852150 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 834 279 0 0 0 chr5 32685109 32685139 -119852120 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 834 1076 58 65 0 chr5 32685764 32685902 -119851357 + B1_Mus1 SINE Alu 2 148 0 3 834 413 273 61 43 chr5 32686027 32686142 -119851117 - RSINE1 SINE B4 -3 162 46 3 834 326 354 87 53 chr5 32686156 32686362 -119850897 + MLT1J LTR MaLR 293 505 -7 3 834 870 281 106 43 chr5 32686582 32686932 -119850327 - MTEa LTR MaLR -7 372 1 3 834 637 157 352 0 chr5 32686989 32687148 -119850111 - B3 SINE B2 0 216 2 3 834 756 254 106 14 chr5 32687279 32687563 -119849696 + L1MB3 LINE L1 5838 6147 -36 3 834 326 236 97 0 chr5 32688302 32688374 -119848885 + ID_B1 SINE B4 82 160 -64 3 834 369 294 83 14 chr5 32688502 32688647 -119848612 + MLT1A1 LTR MaLR 3 157 -251 3 834 253 327 126 9 chr5 32689165 32689276 -119847983 + MER91B DNA Tip100 67 190 0 3 834 316 327 102 99 chr5 32689407 32689750 -119847509 - MLT1F2 LTR MaLR -108 452 109 3 834 789 244 11 22 chr5 32689856 32690040 -119847219 - B3A SINE B2 -16 182 1 3 834 1758 158 49 161 chr5 32690438 32690867 -119846392 + ORR1C2 LTR MaLR 4 384 0 3 834 524 294 14 54 chr5 32691527 32691673 -119845586 + ID_B1 SINE B4 77 211 -13 3 834 1157 148 84 0 chr5 32691861 32692063 -119845196 - URR1B DNA MER1_type 0 225 7 3 834 992 244 111 13 chr5 32693281 32693597 -119843662 - ORR1E LTR MaLR -12 347 1 3 834 241 232 0 18 chr5 32693913 32693970 -119843289 - MLT1A1 LTR MaLR 0 365 310 3 834 1529 73 0 0 chr5 32693981 32694172 -119843087 + B2_Mm2 SINE B2 2 192 -3 3 834 466 91 177 0 chr5 32694184 32694277 -119842982 - B1_Mm SINE Alu -22 125 2 3 834 389 312 56 69 chr5 32694357 32694588 -119842671 - MLT1A1 LTR MaLR -180 228 1 3 834 180 0 0 0 chr5 32695050 32695070 -119842189 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 834 186 150 0 0 chr5 32695071 32695111 -119842148 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 834 2285 106 16 0 chr5 32696012 32696334 -119840925 + ORR1A2 LTR MaLR 1 327 0 3 834 280 301 180 31 chr5 32696765 32696926 -119840333 - MER115 DNA Tip100 -1 692 508 3 834 500 271 205 9 chr5 32697022 32697202 -119840057 + ID_B1 SINE B4 2 216 -8 3 834 289 296 14 0 chr5 32698001 32698072 -119839187 + ID4_ SINE ID 9 80 -3 3 834 223 305 61 0 chr5 32698072 32698083 -119839176 + ID_B1 SINE B4 9 95 -129 3 834 1375 104 16 5 chr5 32699425 32699618 -119837641 + B2_Mm2 SINE B2 1 195 0 3 834 219 69 0 0 chr5 32699627 32699656 -119837603 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 3 834 328 242 63 89 chr5 32699816 32700009 -119837250 + MIRb SINE MIR 4 185 -83 3 834 2257 111 140 40 chr5 32701875 32702297 -119834962 + RMER4A LTR ERVK 3 466 0 3 834 239 270 67 13 chr5 32703485 32703560 -119833699 - L2b LINE L2 0 3375 3297 3 834 244 275 0 24 chr5 32703560 32703642 -119833617 + CT-rich Low_complexity Low_complexity 5 84 0 3 834 279 297 64 56 chr5 32704312 32704437 -119832822 - LTR33A_ LTR ERVL -359 172 47 3 834 324 204 26 13 chr5 32704615 32704779 -119832480 + CT-rich Low_complexity Low_complexity 1 166 0 3 834 217 313 141 30 chr5 32704997 32705132 -119832127 - L2b LINE L2 -224 3163 3014 3 834 341 261 119 25 chr5 32705277 32705395 -119831864 + ID_B1 SINE B4 95 223 -1 3 834 300 313 0 0 chr5 32705397 32705480 -119831779 + ID4_ SINE ID 1 83 0 3 834 328 344 70 30 chr5 32705514 32705715 -119831544 - MLT1A0 LTR MaLR -13 352 144 3 834 192 77 0 0 chr5 32706552 32706578 -119830681 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 3 834 1088 110 7 0 chr5 32706582 32706728 -119830531 - B1_Mus1 SINE Alu -1 147 1 3 834 382 258 48 40 chr5 32706900 32707025 -119830234 - RSINE1 SINE B4 -38 127 2 3 834 513 32 0 0 chr5 32707278 32707341 -119829918 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 834 190 283 162 48 chr5 32707787 32707954 -119829305 + MIRb SINE MIR 75 260 -8 3 834 244 306 79 24 chr5 32708017 32708144 -119829115 - MIRb SINE MIR -131 137 4 3 834 745 207 97 36 chr5 32708433 32708628 -119828631 + ID_B1 SINE B4 1 207 -17 3 834 388 218 35 0 chr5 32709605 32709692 -119827567 + MIRb SINE MIR 112 201 -67 3 834 328 266 38 25 chr5 32710344 32710502 -119826757 + ID_B1 SINE B4 8 212 -12 3 834 180 0 0 0 chr5 32710502 32710522 -119826737 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 834 1283 206 88 7 chr5 32710762 32711045 -119826214 + MTC LTR MaLR 10 315 -106 3 834 2898 138 82 10 chr5 32711048 32711537 -119825722 - RMER1B Other Other -12 1054 531 3 834 426 259 120 30 chr5 32711728 32711895 -119825364 - MTEa LTR MaLR -4 375 194 3 834 1101 170 0 6 chr5 32712258 32712441 -119824818 - URR1A DNA MER1_type 0 226 45 3 834 337 338 35 21 chr5 32712645 32712787 -119824472 - B4 SINE B4 -61 231 88 3 834 726 181 0 0 chr5 32712671 32712787 -119824472 - B1_Mur4 SINE Alu -32 118 3 3 834 722 198 169 6 chr5 32712802 32712980 -119824279 + ID_B1 SINE B4 1 207 -17 4 834 272 329 93 19 chr5 32712985 32713146 -119824113 - MIRb SINE MIR 0 262 90 4 834 363 285 64 16 chr5 32713687 32713812 -119823447 - MIRb SINE MIR -64 204 74 4 834 496 171 0 0 chr5 32714273 32714355 -119822904 + PB1D9 SINE Alu 34 115 -5 4 834 253 167 45 15 chr5 32714357 32714424 -119822835 + GA-rich Low_complexity Low_complexity 2 70 0 4 834 329 258 71 10 chr5 32714527 32714625 -119822634 + HAL1-3A_ME LINE L1 1915 2018 -840 4 834 464 156 0 11 chr5 32714625 32714716 -119822543 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 834 606 288 75 129 chr5 32714718 32715013 -119822246 + MLT1D LTR MaLR 189 505 0 4 834 256 325 68 4 chr5 32715131 32715299 -119821960 - MIRb SINE MIR -8 260 1 4 834 414 0 0 0 chr5 32715397 32715443 -119821816 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 834 214 341 11 11 chr5 32715457 32715546 -119821713 - MIR SINE MIR -23 239 151 4 834 276 100 0 0 chr5 32716088 32716128 -119821131 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 834 291 323 48 63 chr5 32716393 32716537 -119820722 + MIRm SINE MIR 23 179 -97 4 834 467 318 0 0 chr5 32716569 32716679 -119820580 + RSINE1 SINE B4 32 141 -24 4 834 386 20 0 19 chr5 32716680 32716732 -119820527 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 834 479 266 40 16 chr5 32716847 32716973 -119820286 - RSINE1 SINE B4 -34 131 3 4 834 771 270 21 11 chr5 32717594 32717781 -119819478 + ID_B1 SINE B4 13 201 -23 4 834 374 214 36 188 chr5 32717665 32717803 -119819456 + B1F2 SINE Alu 5 121 -28 4 834 382 258 57 47 chr5 32718166 32718272 -119818987 + PB1D10 SINE Alu 3 109 -8 4 834 1137 36 0 0 chr5 32718310 32718448 -119818811 + (CA)n Simple_repeat Simple_repeat 1 138 0 4 834 441 0 0 0 chr5 32718448 32718496 -119818763 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 834 219 274 141 12 chr5 32718565 32718650 -119818609 - MIRb SINE MIR -1 267 172 4 834 438 36 0 0 chr5 32718764 32718820 -119818439 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 4 834 890 171 0 0 chr5 32718825 32718965 -119818294 - B1_Mus1 SINE Alu -6 142 3 4 834 230 357 10 10 chr5 32719527 32719626 -119817633 - Tigger16b DNA Tigger -45 292 194 4 834 189 171 0 0 chr5 32719636 32719671 -119817588 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 834 252 312 0 15 chr5 32719676 32719741 -119817518 - ID4_ SINE ID -9 74 11 4 834 205 205 0 0 chr5 32719741 32719780 -119817479 + T-rich Low_complexity Low_complexity 1 39 0 4 834 757 168 23 0 chr5 32719781 32719912 -119817347 - B1_Mus2 SINE Alu -1 146 13 4 834 314 23 0 23 chr5 32719914 32719958 -119817301 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 4 834 741 202 0 0 chr5 32719958 32720077 -119817182 + RSINE1 SINE B4 3 121 -44 4 834 387 0 0 0 chr5 32720084 32720127 -119817132 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 834 216 238 48 0 chr5 32720168 32720210 -119817049 - ID_B1 SINE B4 -103 121 78 4 834 1354 250 113 41 chr5 32720239 32720706 -119816553 + Lx9 LINE L1 6557 7057 -587 4 834 5323 77 1 21 chr5 32720703 32720841 -119816418 + L1_Mus1 LINE L1 5182 5306 -577 4 834 1241 91 63 0 chr5 32720841 32721016 -119816243 - B2_Mm1t SINE B2 -7 186 1 4 834 8086 56 1 13 chr5 32721016 32722287 -119814972 + L1_Mus1 LINE L1 5307 6567 0 4 834 333 0 0 0 chr5 32723703 32723740 -119813519 + (A)n Simple_repeat Simple_repeat 1 37 0 4 834 2482 177 88 21 chr5 32723740 32724160 -119813099 + Lx9 LINE L1 7040 7505 -139 4 834 342 0 0 0 chr5 32724160 32724198 -119813061 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 834 2482 177 88 21 chr5 32724198 32724343 -119812916 + Lx9 LINE L1 7506 7642 -2 4 834 423 0 0 0 chr5 32724649 32724696 -119812563 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 834 494 265 7 0 chr5 32724816 32724952 -119812307 - RSINE1 SINE B4 -27 138 2 4 834 25 31 0 0 chr5 32725082 32725114 -119812145 + AT_rich Low_complexity Low_complexity 1 32 0 4 834 420 297 0 66 chr5 32725606 32725743 -119811516 - B1F SINE Alu -15 134 7 4 834 277 296 45 197 chr5 32725610 32725854 -119811405 - ID_B1 SINE B4 -17 207 1 4 834 4235 141 65 93 chr5 32726008 32726940 -119810319 + RMER17A2 LTR ERVK 1 906 0 4 834 383 233 19 46 chr5 32727208 32727219 -119810040 + MT2B LTR ERVL 156 163 -438 4 834 509 221 80 0 chr5 32727219 32727332 -119809927 + B1_Mur4 SINE Alu 3 124 -26 4 834 677 115 19 0 chr5 32727369 32727473 -119809786 + B3 SINE B2 9 114 -102 4 834 200 227 0 0 chr5 32727524 32727568 -119809691 + A-rich Low_complexity Low_complexity 1 44 0 4 834 214 203 102 0 chr5 32727583 32727642 -119809617 + B2_Mm2 SINE B2 28 92 -103 4 834 488 198 47 9 chr5 32728684 32728791 -119808468 + B1_Mur1 SINE Alu 39 149 0 4 834 942 113 0 14 chr5 32728976 32729119 -119808140 - B1_Mus1 SINE Alu -7 141 1 4 834 349 193 36 12 chr5 32729512 32729596 -119807663 + PB1D7 SINE Alu 34 119 -1 4 834 570 294 7 0 chr5 32729616 32729759 -119807500 + RSINE1 SINE B4 4 147 -18 4 834 360 0 0 0 chr5 32729760 32729800 -119807459 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 834 496 347 66 0 chr5 32729828 32729995 -119807264 + ID_B1 SINE B4 31 208 -16 4 834 215 300 17 0 chr5 32730167 32730227 -119807032 - RSINE1 SINE B4 -102 63 3 4 834 351 0 0 0 chr5 32730396 32730435 -119806824 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4 834 2489 72 12 9 chr5 32730564 32730888 -119806371 + ORR1A2 LTR MaLR 1 325 -2 4 834 1080 254 21 29 chr5 32731253 32731533 -119805726 + B4A SINE B4 1 278 -14 4 834 240 324 0 0 chr5 32731539 32731607 -119805652 + (CATA)n Simple_repeat Simple_repeat 4 71 0 4 834 216 67 0 0 chr5 32732347 32732377 -119804882 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 4 834 279 0 0 0 chr5 32732874 32732905 -119804354 + (A)n Simple_repeat Simple_repeat 1 31 0 4 834 4597 73 46 9 chr5 32733285 32733920 -119803339 - L1_Mus1 LINE L1 0 6567 5910 4 834 384 297 11 0 chr5 32734400 32734491 -119802768 + PB1D10 SINE Alu 8 99 -18 4 834 221 364 78 39 chr5 32734533 32734636 -119802623 + ID_B1 SINE B4 80 186 -38 4 834 261 0 0 0 chr5 32734646 32734675 -119802584 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 4 834 2348 151 58 5 chr5 32734866 32735266 -119801993 - MTC LTR MaLR 0 421 1 4 834 703 193 22 0 chr5 32735541 32735676 -119801583 + B1_Mur1 SINE Alu 1 138 -11 4 834 294 29 0 0 chr5 32735676 32735711 -119801548 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 834 1830 223 130 75 chr5 32735907 32736118 -119801141 + RCHARR1 DNA MER1_type 3 252 -722 4 834 7012 108 12 9 chr5 32736118 32737138 -119800121 - RLTR13D2 LTR ERVK 0 1023 1 4 834 1830 223 130 75 chr5 32737138 32737643 -119799616 + RCHARR1 DNA MER1_type 253 758 -216 4 834 703 259 13 0 chr5 32737645 32737803 -119799456 + RSINE1 SINE B4 3 162 -3 4 834 21 0 0 0 chr5 32737807 32737828 -119799431 + AT_rich Low_complexity Low_complexity 1 21 0 4 834 241 219 37 19 chr5 32737828 32737935 -119799324 + (TA)n Simple_repeat Simple_repeat 1 109 0 4 834 692 160 5 82 chr5 32737935 32738114 -119799145 + RCHARR1 DNA MER1_type 740 904 -70 4 834 286 157 32 15 chr5 32738114 32738191 -119799068 + MTD LTR MaLR 1 78 -301 4 834 249 218 0 35 chr5 32738220 32738277 -119798982 + MTD LTR MaLR 168 222 -197 4 834 4637 35 0 0 chr5 32738277 32738817 -119798442 + L1Md_T LINE L1 5047 5586 -297 4 834 9010 9 3 0 chr5 32738817 32739810 -119797449 + L1Md_T LINE L1 5587 6582 0 4 834 912 175 54 24 chr5 32739810 32740015 -119797244 + MTD LTR MaLR 196 406 -13 4 834 259 257 0 63 chr5 32740028 32740107 -119797152 + RCHARR1 DNA MER1_type 901 974 0 4 834 786 159 0 0 chr5 32741197 32741323 -119795936 + B3 SINE B2 5 130 -86 4 834 405 0 0 0 chr5 32741356 32741401 -119795858 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 834 180 0 0 0 chr5 32741401 32741420 -119795839 + (GAAA)n Simple_repeat Simple_repeat 3 22 0 4 834 330 26 0 0 chr5 32741664 32741703 -119795556 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 4 834 275 247 22 45 chr5 32741703 32741792 -119795467 + MER58C DNA MER1_type 117 203 -12 4 834 208 139 0 0 chr5 32742701 32742737 -119794522 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 4 834 865 117 13 76 chr5 32743110 32743267 -119793992 + B1_Mus2 SINE Alu 1 147 0 4 834 396 0 0 0 chr5 32743299 32743343 -119793916 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 834 317 242 11 42 chr5 32743344 32743439 -119793820 + ID_B1 SINE B4 2 93 -131 4 834 230 234 0 0 chr5 32744218 32744265 -119792994 + B1F SINE Alu 30 76 -73 4 834 525 16 0 0 chr5 32744267 32744329 -119792930 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 834 790 246 151 23 chr5 32744352 32744610 -119792649 + B4 SINE B4 2 292 0 4 834 278 225 14 14 chr5 32744610 32744682 -119792577 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 834 297 191 69 56 chr5 32744887 32744959 -119792300 - ID4_ SINE ID -9 74 2 4 834 355 213 97 44 chr5 32744963 32745076 -119792183 - PB1D10 SINE Alu -2 125 1 4 834 421 229 0 0 chr5 32745125 32745221 -119792038 + PB1D10 SINE Alu 22 117 0 4 834 2174 231 54 52 chr5 32745309 32745880 -119791379 + Lx5 LINE L1 6459 7030 -20 4 834 257 351 26 9 chr5 32746298 32746413 -119790846 - Lx8 LINE L1 -296 7177 7061 4 834 244 331 80 7 chr5 32746525 32746662 -119790597 + MIRb SINE MIR 79 225 -37 4 834 423 68 0 0 chr5 32747031 32747090 -119790169 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 834 259 304 0 0 chr5 32747095 32747151 -119790108 - B4 SINE B4 -18 274 219 4 834 627 267 0 27 chr5 32747192 32747342 -119789917 - B1_Mur1 SINE Alu 0 149 4 4 834 815 265 58 27 chr5 32747342 32747564 -119789695 - B4 SINE B4 -63 229 1 4 834 420 329 87 18 chr5 32748042 32748271 -119788988 + B4 SINE B4 1 245 -47 4 834 267 315 114 61 chr5 32748294 32748426 -119788833 + RSINE1 SINE B4 2 140 -25 4 834 212 77 26 0 chr5 32748427 32748466 -119788793 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 834 411 119 0 0 chr5 32748466 32748533 -119788726 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 5 834 405 0 0 0 chr5 32749121 32749166 -119788093 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 834 564 279 0 0 chr5 32749548 32749670 -119787589 - ID_B1 SINE B4 -9 215 94 5 834 425 300 56 14 chr5 32749670 32749681 -119787578 - B1F1 SINE Alu 0 92 2 5 834 665 318 69 28 chr5 32749682 32750132 -119787127 - L1ME3 LINE L1 -290 5950 5462 5 834 1248 41 0 0 chr5 32750132 32750279 -119786980 - B1_Mus2 SINE Alu 0 147 1 5 834 500 331 87 25 chr5 32750279 32750442 -119786817 - L1ME3 LINE L1 -712 5461 5276 5 834 805 214 50 32 chr5 32750501 32750781 -119786478 + Lx9 LINE L1 7360 7644 0 5 834 873 167 0 0 chr5 32750788 32750932 -119786327 + B1_Mur2 SINE Alu 6 149 0 5 834 1125 82 0 0 chr5 32751199 32751345 -119785914 - B1_Mus1 SINE Alu -1 147 2 5 834 543 218 9 0 chr5 32751368 32751478 -119785781 + PB1D7 SINE Alu 1 111 -9 5 834 777 185 6 11 chr5 32751483 32751663 -119785596 + GA-rich Low_complexity Low_complexity 2 180 0 5 834 226 194 0 0 chr5 32751663 32751699 -119785560 + polypurine Low_complexity Low_complexity 1 36 0 5 834 355 250 26 0 chr5 32751753 32751829 -119785430 + ID4 SINE ID 2 79 -4 5 834 415 284 78 10 chr5 32751877 32752069 -119785190 - L1ME3 LINE L1 -1317 4829 4625 5 834 574 259 19 102 chr5 32752131 32752337 -119784922 + B3A SINE B2 2 190 -8 5 834 29 28 0 0 chr5 32752356 32752392 -119784867 + AT_rich Low_complexity Low_complexity 1 36 0 5 834 378 210 0 12 chr5 32752440 32752522 -119784737 - ID_B1 SINE B4 0 224 144 5 834 238 266 16 0 chr5 32752562 32752626 -119784633 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 834 712 275 114 23 chr5 32752640 32752904 -119784355 - B4A SINE B4 -4 288 1 5 834 198 0 0 0 chr5 32752927 32752949 -119784310 + (A)n Simple_repeat Simple_repeat 1 22 0 5 834 405 151 0 0 chr5 32752993 32753079 -119784180 + (CAGA)n Simple_repeat Simple_repeat 3 88 0 5 834 430 283 27 14 chr5 32753367 32753514 -119783745 + B1F SINE Alu 1 149 0 5 834 316 277 116 0 chr5 32753780 32753892 -119783367 + MT2A LTR ERVL 1 125 -408 5 834 1426 246 51 3 chr5 32753793 32754128 -119783131 + MTE2b LTR MaLR 18 368 -11 5 834 337 264 99 45 chr5 32755097 32755208 -119782051 - PB1D7 SINE Alu -1 119 3 5 834 901 142 14 0 chr5 32755452 32755600 -119781659 - B1_Mur4 SINE Alu 0 150 1 5 834 740 246 57 38 chr5 32755950 32756143 -119781116 + ID_B1 SINE B4 9 211 -13 5 834 200 34 0 33 chr5 32756143 32756173 -119781086 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 834 740 246 57 38 chr5 32756173 32756190 -119781069 + ID_B1 SINE B4 212 223 -1 5 834 251 267 163 0 chr5 32757095 32757181 -119780078 - MamRep1161 DNA TcMar -797 160 61 5 834 289 312 167 30 chr5 32757609 32757741 -119779518 + RSINE1 SINE B4 8 157 -8 5 834 1179 55 14 0 chr5 32757760 32757905 -119779354 - B1_Mus1 SINE Alu 0 148 2 5 834 22 0 0 0 chr5 32758002 32758024 -119779235 + AT_rich Low_complexity Low_complexity 1 22 0 5 834 251 286 26 13 chr5 32758081 32758159 -119779100 + ID4 SINE ID 2 80 -3 5 834 183 80 0 0 chr5 32758191 32758216 -119779043 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 5 834 339 345 54 47 chr5 32758465 32758742 -119778517 + L4 LINE RTE 656 934 -1095 5 834 306 0 0 0 chr5 32758769 32758803 -119778456 + (TGG)n Simple_repeat Simple_repeat 2 35 0 5 834 361 179 0 23 chr5 32759010 32759096 -119778163 + CT-rich Low_complexity Low_complexity 1 84 0 5 834 848 143 7 28 chr5 32759096 32759240 -119778019 - B1_Mus1 SINE Alu -6 142 2 5 834 675 187 21 21 chr5 32759319 32759461 -119777798 + B1_Mur1 SINE Alu 7 148 -1 5 834 441 183 61 88 chr5 32760047 32760159 -119777100 - B3 SINE B2 0 216 108 5 834 595 196 65 7 chr5 32760159 32760298 -119776961 + RMER10A LTR ERVL 1 147 -295 5 834 570 248 18 18 chr5 32760278 32760442 -119776817 + RMER10A LTR ERVL 273 436 -6 5 834 540 187 35 53 chr5 32760446 32760559 -119776700 - B3 SINE B2 -105 111 1 5 834 384 267 56 0 chr5 32760592 32760682 -119776577 - ID_B1 SINE B4 -47 177 83 5 834 259 160 0 26 chr5 32761852 32761929 -119775330 + (CGGG)n Simple_repeat Simple_repeat 2 76 0 5 834 23 33 0 0 chr5 32763237 32763267 -119773992 + AT_rich Low_complexity Low_complexity 1 30 0 5 834 660 116 172 8 chr5 32763800 32763922 -119773337 - B1_Mus1 SINE Alu -5 143 2 5 834 330 160 23 13 chr5 32764366 32764442 -119772817 + B1_Mus2 SINE Alu 2 80 -68 5 834 708 131 95 0 chr5 32764992 32765129 -119772130 - B3 SINE B2 -65 151 2 5 834 474 306 44 88 chr5 32765153 32765450 -119771809 - L1MB8 LINE L1 -16 6162 5879 5 834 285 183 33 0 chr5 32765469 32765529 -119771730 - PB1D9 SINE Alu -7 113 52 5 834 866 237 78 8 chr5 32765561 32765829 -119771430 - L1MB8 LINE L1 -308 5870 5584 5 834 288 0 0 0 chr5 32766310 32766342 -119770917 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5 834 348 300 18 9 chr5 32766367 32766478 -119770781 - ID_B1 SINE B4 -27 197 86 5 834 432 222 23 86 chr5 32767575 32767703 -119769556 - B1_Mur1 SINE Alu 0 149 30 5 834 230 255 0 0 chr5 32767703 32767754 -119769505 - Charlie1a DNA MER1_type -334 1121 1071 5 834 409 320 48 0 chr5 32767799 32767924 -119769335 - RSINE1 SINE B4 -10 155 25 5 104 622 232 28 7 chr5 32767963 32768106 -119769153 + B1_Mur1 SINE Alu 2 147 -2 5 835 349 223 274 20 chr5 32768113 32768310 -119768949 - Charlie1a DNA MER1_type -426 1029 783 5 835 5427 37 5 0 chr5 32768349 32768990 -119768269 - L1Md_T LINE L1 -3 6579 5936 5 835 3245 19 0 0 chr5 32768995 32769362 -119767897 + L1Md_T LINE L1 5587 5953 -629 5 835 247 288 134 20 chr5 32769408 32769557 -119767702 - Charlie1a DNA MER1_type -819 636 471 5 835 2105 258 196 47 chr5 32770293 32771028 -119766231 - Cheshire DNA MER1_type -148 2272 1498 5 835 431 284 168 0 chr5 32771028 32771183 -119766076 + B3A SINE B2 2 182 -16 5 835 2105 258 196 47 chr5 32771183 32771779 -119765480 - Cheshire DNA MER1_type -923 1497 742 5 835 282 194 31 24 chr5 32771764 32771856 -119765403 + PB1D9 SINE Alu 38 126 -1 5 835 533 182 214 59 chr5 32772080 32772267 -119764992 + B3 SINE B2 1 216 0 5 835 236 213 68 75 chr5 32772284 32772392 -119764867 + PB1 SINE Alu 1 144 -3 5 835 277 122 0 0 chr5 32772392 32772433 -119764826 + ID_B1 SINE B4 181 221 -3 5 835 339 118 0 0 chr5 32772998 32773049 -119764210 - ORR1C2 LTR MaLR 0 384 334 5 835 1251 27 0 0 chr5 32773049 32773195 -119764064 - B1_Mm SINE Alu 0 147 2 5 835 938 35 83 28 chr5 32773203 32773348 -119763911 - B2_Mm2 SINE B2 -1 194 42 5 835 6271 47 6 2 chr5 32773358 32774204 -119763055 - MTA_Mm-int LTR MaLR -249 849 1 5 835 3519 20 5 0 chr5 32774204 32774598 -119762661 - MTA_Mm LTR MaLR 0 396 1 5 835 1272 216 33 13 chr5 32774598 32774863 -119762396 - ORR1C2-int LTR MaLR -243 1266 994 5 835 1128 254 63 12 chr5 32774878 32775213 -119762046 - ORR1C2-int LTR MaLR -1018 352 1 5 835 1067 201 100 102 chr5 32775211 32775277 -119761982 - ORR1C2 LTR MaLR -2 372 324 5 835 727 161 46 0 chr5 32775277 32775407 -119761852 - B1_Mur3 SINE Alu -13 136 1 5 835 1115 196 129 7 chr5 32775407 32775711 -119761548 - ORR1C2 LTR MaLR -42 342 3 5 835 21 71 0 0 chr5 32775754 32775796 -119761463 + AT_rich Low_complexity Low_complexity 1 42 0 5 835 698 240 162 0 chr5 32776397 32776576 -119760683 + B3 SINE B2 2 209 -7 5 835 192 77 0 0 chr5 32776654 32776680 -119760579 + (A)n Simple_repeat Simple_repeat 1 26 0 5 835 353 295 87 9 chr5 32776856 32777069 -119760190 + L1M5 LINE L1 5360 5598 -846 5 835 1010 52 15 0 chr5 32778182 32778316 -119758943 + B1_Mus1 SINE Alu 13 148 0 5 835 454 80 184 13 chr5 32778505 32778581 -119758678 - B2_Mm1t SINE B2 -104 89 1 5 835 338 238 76 0 chr5 32778836 32778920 -119758339 + PB1D9 SINE Alu 1 100 -20 5 835 234 91 0 0 chr5 32778928 32778961 -119758298 + (CATA)n Simple_repeat Simple_repeat 2 34 0 5 835 584 308 0 20 chr5 32778982 32779128 -119758131 + ID_B1 SINE B4 80 222 -2 5 835 324 0 0 0 chr5 32779132 32779168 -119758091 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 835 421 184 45 72 chr5 32779206 32779317 -119757942 - B4 SINE B4 -3 289 182 5 835 360 232 111 43 chr5 32779415 32779532 -119757727 - B4 SINE B4 -98 194 70 5 835 573 200 141 37 chr5 32779734 32779869 -119757390 - B1_Mur4 SINE Alu 0 150 2 5 835 201 74 0 0 chr5 32780317 32780344 -119756915 + (T)n Simple_repeat Simple_repeat 1 27 0 5 835 799 168 14 7 chr5 32780946 32781090 -119756169 + B1_Mus1 SINE Alu 2 146 -2 5 835 201 74 0 0 chr5 32781163 32781190 -119756069 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 5 835 1417 79 11 0 chr5 32781190 32781380 -119755879 - B2_Mm1t SINE B2 0 193 2 5 835 23 68 0 0 chr5 32782471 32782515 -119754744 + AT_rich Low_complexity Low_complexity 1 44 0 5 835 459 316 133 0 chr5 32782521 32782679 -119754580 - MER47B DNA MER2_type -128 290 112 5 835 338 338 45 51 chr5 32782875 32783031 -119754228 - MLT1F2 LTR MaLR 0 560 406 5 835 265 211 31 224 chr5 32783636 32783734 -119753525 - RSINE1 SINE B4 0 165 87 5 835 751 266 29 25 chr5 32783747 32783951 -119753308 + B3 SINE B2 1 205 -11 5 835 3533 20 0 0 chr5 32785267 32785663 -119751596 - MTA_Mm LTR MaLR 0 396 1 5 835 221 206 183 67 chr5 32785875 32785979 -119751280 + B1F1 SINE Alu 26 141 -8 5 835 362 169 146 10 chr5 32786038 32786134 -119751125 + PB1D10 SINE Alu 9 117 0 5 835 279 0 0 0 chr5 32786655 32786686 -119750573 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 835 266 228 23 81 chr5 32786794 32786880 -119750379 + MT2B LTR ERVL 160 240 -361 5 835 528 246 34 0 chr5 32786815 32786933 -119750326 + B1_Mur1 SINE Alu 17 138 -11 5 835 913 224 92 9 chr5 32788499 32788764 -119748495 - ORR1D1 LTR MaLR -31 343 29 5 835 952 213 34 10 chr5 32788789 32788993 -119748266 + B3 SINE B2 1 209 -7 5 835 810 274 9 14 chr5 32789486 32789697 -119747562 - B3 SINE B2 -5 211 2 5 835 230 277 30 15 chr5 32790140 32790206 -119747053 - PB1D10 SINE Alu -5 112 46 5 835 602 271 196 25 chr5 32790306 32790541 -119746718 + B4A SINE B4 4 278 -14 5 835 451 277 27 68 chr5 32790814 32790961 -119746298 - MER2B DNA MER2_type -23 313 173 5 835 727 203 28 0 chr5 32790988 32791131 -119746128 + B1_Mur4 SINE Alu 2 148 -2 6 835 734 186 216 22 chr5 32791467 32791648 -119745611 + B3 SINE B2 1 216 0 6 835 653 280 7 0 chr5 32791753 32791896 -119745363 + B1_Mur1 SINE Alu 6 149 0 6 835 617 82 82 0 chr5 32791903 32792000 -119745259 + B1_Mm SINE Alu 43 147 0 6 835 590 291 117 21 chr5 32792008 32792466 -119744793 + L1MB7 LINE L1 5494 6009 -175 6 835 700 162 94 0 chr5 32792622 32792739 -119744520 + B1_Mus2 SINE Alu 5 132 -15 6 835 432 290 30 0 chr5 32792849 32792949 -119744310 + PB1D7 SINE Alu 12 114 -6 6 835 22 0 0 0 chr5 32793303 32793325 -119743934 + AT_rich Low_complexity Low_complexity 1 22 0 6 835 279 305 87 63 chr5 32795777 32795801 -119741458 + B3A SINE B2 44 67 -131 6 835 385 42 97 14 chr5 32795801 32795873 -119741386 - L1Md_F3 LINE L1 -1 6583 6506 6 835 536 225 83 90 chr5 32795873 32796029 -119741230 + B3 SINE B2 57 211 -5 6 835 342 232 135 10 chr5 32796114 32796210 -119741049 - PB1D7 SINE Alu 0 120 13 6 835 231 317 83 37 chr5 32796192 32796300 -119740959 - B1F SINE Alu -24 125 13 6 835 678 193 192 6 chr5 32796471 32796648 -119740611 - B3 SINE B2 -6 210 1 6 835 426 194 105 21 chr5 32796670 32796765 -119740494 + PB1D10 SINE Alu 5 107 -10 6 835 404 297 266 15 chr5 32796812 32797147 -119740112 + Lx8 LINE L1 6910 7328 -145 6 835 1236 101 45 0 chr5 32797426 32797605 -119739654 + B2_Mm2 SINE B2 4 190 -5 6 835 375 244 6 65 chr5 32798044 32798168 -119739091 + B1_Mur3 SINE Alu 2 120 0 6 835 740 127 17 8 chr5 32798274 32798393 -119738866 + PB1D9 SINE Alu 1 120 0 6 835 235 279 136 0 chr5 32799029 32799169 -119738090 + L1MEf LINE L1 625 783 -5417 6 835 305 120 359 29 chr5 32799201 32799307 -119737952 - B2_Mm2 SINE B2 -8 187 47 6 835 29 0 0 0 chr5 32799339 32799368 -119737891 + AT_rich Low_complexity Low_complexity 1 29 0 6 835 1017 110 92 0 chr5 32799377 32799541 -119737718 - B2_Mm1t SINE B2 -13 180 2 6 835 304 350 40 0 chr5 32799594 32799694 -119737565 + MLT1I LTR MaLR 170 273 -138 6 835 611 140 86 37 chr5 32800242 32800405 -119736854 + Lx2 LINE L1 6826 6996 -1 6 835 5056 112 35 6 chr5 32800426 32801208 -119736051 - Lx LINE L1 -7 6647 5844 6 835 2210 114 21 13 chr5 32801209 32801591 -119735668 + L1_Mur2 LINE L1 4346 4730 -1147 6 835 189 125 0 0 chr5 32801591 32801609 -119735650 + (A)n Simple_repeat Simple_repeat 1 18 0 6 835 1189 75 0 0 chr5 32801609 32801756 -119735503 + B1_Mus2 SINE Alu 1 147 0 6 835 189 125 0 0 chr5 32801756 32801777 -119735482 + (A)n Simple_repeat Simple_repeat 1 21 0 6 835 406 279 0 11 chr5 32802028 32802115 -119735144 + RSINE1 SINE B4 8 93 -72 6 835 778 72 0 26 chr5 32802128 32802242 -119735017 - B1_Mus1 SINE Alu -1 147 37 6 835 342 0 0 0 chr5 32802472 32802510 -119734749 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 835 5982 157 26 5 chr5 32802511 32803615 -119733644 + L1_Mm LINE L1 4737 5864 -19 6 835 709 279 25 34 chr5 32804060 32804264 -119732995 + B3A SINE B2 2 203 -13 6 835 257 294 53 100 chr5 32804173 32804343 -119732916 - RMER12 LTR ERVK -439 883 722 6 835 4984 36 0 0 chr5 32804906 32805492 -119731767 - L1Md_T LINE L1 -1 6581 5996 6 835 791 209 122 32 chr5 32805498 32805686 -119731573 - B3 SINE B2 0 216 12 6 835 27 49 0 0 chr5 32805746 32805787 -119731472 + AT_rich Low_complexity Low_complexity 1 41 0 6 835 581 264 7 28 chr5 32806690 32806834 -119730425 + ID_B1 SINE B4 84 224 0 6 835 854 241 9 38 chr5 32806927 32807138 -119730121 + B3 SINE B2 2 206 -10 6 835 218 105 26 0 chr5 32807181 32807219 -119730040 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 6 835 458 120 11 11 chr5 32807227 32807320 -119729939 - L1_Mus2 LINE L1 0 6566 6474 6 835 26 0 0 0 chr5 32807439 32807465 -119729794 + AT_rich Low_complexity Low_complexity 1 26 0 6 835 941 75 72 29 chr5 32807655 32807793 -119729466 - B1_Mus2 SINE Alu 0 147 4 6 835 232 309 120 67 chr5 32808175 32808383 -119728876 - MLT1G3 LTR MaLR -39 556 338 6 835 491 305 135 24 chr5 32808492 32808744 -119728515 - B4A SINE B4 -12 280 1 6 835 228 366 0 0 chr5 32808744 32808815 -119728444 - PB1D10 SINE Alu -15 102 32 6 835 5925 98 35 72 chr5 32808912 32809573 -119727686 - L1_Mus3 LINE L1 -7 6631 5949 6 835 760 75 9 0 chr5 32809573 32809680 -119727579 - B1_Mus2 SINE Alu 0 147 40 6 835 5925 98 35 72 chr5 32809680 32810456 -119726803 - L1_Mus3 LINE L1 -7 5948 5145 6 835 207 0 0 0 chr5 32811912 32811935 -119725324 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 835 1105 66 7 0 chr5 32811935 32812072 -119725187 - B1_Mus2 SINE Alu -9 138 1 6 835 460 255 213 60 chr5 32812488 32812798 -119724461 + MLT2B2 LTR ERVL 106 451 -64 6 835 2594 80 0 0 chr5 32813603 32813930 -119723329 + ORR1A2 LTR MaLR 1 327 0 6 835 925 101 26 13 chr5 32813968 32814119 -119723140 + URR1B DNA MER1_type 73 225 0 6 835 279 0 0 0 chr5 32814806 32814837 -119722422 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 835 1502 54 0 21 chr5 32814932 32815121 -119722138 + B2_Mm1t SINE B2 2 186 -7 6 835 672 306 26 48 chr5 32815527 32815751 -119721508 + B4A SINE B4 13 231 -61 6 835 885 73 19 0 chr5 32815751 32815880 -119721379 + B1_Mm SINE Alu 1 150 0 6 835 257 95 47 16 chr5 32815963 32816027 -119721232 + (CA)n Simple_repeat Simple_repeat 1 66 0 6 835 1411 63 10 16 chr5 32816050 32816244 -119721015 + B2_Mm1t SINE B2 1 193 0 6 835 3368 46 2 0 chr5 32816829 32817224 -119720035 + MTA_Mm LTR MaLR 1 396 0 6 835 238 132 135 81 chr5 32818133 32818207 -119719052 - MTB_Mm LTR MaLR -52 355 278 6 835 1095 26 32 26 chr5 32820641 32820797 -119716462 + L1Md_F3 LINE L1 6428 6584 0 6 835 494 274 0 79 chr5 32821049 32821176 -119716083 + B1F SINE Alu 1 117 -32 6 835 312 321 0 122 chr5 32821176 32821201 -119716058 + ID_B1 SINE B4 82 214 -10 6 835 528 93 0 0 chr5 32821409 32821484 -119715775 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 6 835 324 347 46 33 chr5 32821484 32821636 -119715623 + HAL1-3A_ME LINE L1 2284 2437 -421 6 835 1322 214 143 15 chr5 32822462 32822790 -119714469 + ORR1D2 LTR MaLR 1 370 0 6 835 31411 78 15 5 chr5 32824228 32829538 -119707721 + L1Md_F2 LINE L1 238 5586 -297 6 835 7647 60 8 11 chr5 32829539 32830525 -119706734 + L1Md_F2 LINE L1 5588 6570 -12 6 835 334 219 83 0 chr5 32830695 32830791 -119706468 + L1_Mur3 LINE L1 3696 3799 -2081 6 835 542 274 22 39 chr5 32830793 32831025 -119706234 + L1MA9 LINE L1 3910 4137 -2003 6 835 1730 130 0 2 chr5 32831087 32831368 -119705891 - Lx2B LINE L1 -921 6055 5783 6 835 1194 54 0 0 chr5 32831368 32831515 -119705744 - B1_Mus1 SINE Alu 0 148 2 6 835 1484 159 3 79 chr5 32831515 32831548 -119705711 - Lx2B LINE L1 -1179 5797 5765 6 835 818 164 0 30 chr5 32831545 32831709 -119705550 + L1_Mur2 LINE L1 4824 4982 -895 6 835 718 325 107 13 chr5 32831714 32831867 -119705392 + L1MA9 LINE L1 4526 4704 -1439 6 835 180 0 0 0 chr5 32831867 32831887 -119705372 + (CATA)n Simple_repeat Simple_repeat 2 21 0 6 835 831 324 85 61 chr5 32831887 32833045 -119704214 + L1MA9 LINE L1 4705 5903 -409 6 835 317 354 26 26 chr5 32833064 32833215 -119704044 + HAL1-3A_ME LINE L1 1978 2128 -730 6 835 1815 9 9 0 chr5 32833217 32833428 -119703831 + ORR1A1 LTR MaLR 134 346 0 6 835 316 275 73 13 chr5 32833676 32833827 -119703432 + L1M2 LINE L1 5593 5752 -548 6 835 630 340 0 0 chr5 32833852 32834008 -119703251 - RSINE1 SINE B4 -7 158 3 6 835 357 245 98 115 chr5 32834054 32834347 -119702912 + MTEb LTR MaLR 33 353 -26 6 835 186 43 0 0 chr5 32834465 32834488 -119702771 + (A)n Simple_repeat Simple_repeat 1 23 0 6 835 2679 33 12 21 chr5 32834580 32834863 -119702396 + IAPEY_LTR LTR ERVK 53 339 -46 6 835 4003 35 5 0 chr5 32834863 32835297 -119701962 + RLTR10C LTR ERVK 1 436 0 6 835 2679 33 12 21 chr5 32835297 32835349 -119701910 + IAPEY_LTR LTR ERVK 340 385 0 6 835 59381 67 3 8 chr5 32835349 32839034 -119698225 + IAPEy-int LTR ERVK 1 3677 -3836 6 835 1656 48 0 0 chr5 32839034 32839220 -119698039 + B2_Mm1t SINE B2 2 187 -6 6 835 59381 67 3 8 chr5 32839220 32839428 -119697831 + IAPEy-int LTR ERVK 3678 3876 -3637 6 835 1452 43 10 111 chr5 32839428 32839636 -119697623 + B2_Mm1a SINE B2 2 188 -5 6 835 59381 67 3 8 chr5 32839636 32843291 -119693968 + IAPEy-int LTR ERVK 3877 7513 0 6 835 1161 74 0 0 chr5 32843291 32843439 -119693820 + IAPEY_LTR LTR ERVK 1 148 -209 6 835 236 297 97 21 chr5 32843702 32843795 -119693464 + LTR40a LTR ERVL 397 496 -23 6 835 1491 137 66 8 chr5 32843889 32844147 -119693112 + RLTR15 LTR ERVK 87 359 0 6 835 1925 116 14 7 chr5 32844147 32844424 -119692835 - RMER6B LTR ERVK -182 279 1 6 835 451 321 88 26 chr5 32844427 32844822 -119692437 + L1M4 LINE L1 2559 2977 -3169 6 835 299 257 136 9 chr5 32844822 32844932 -119692327 + L1M4 LINE L1 5431 5554 -629 6 835 21 0 0 0 chr5 32845084 32845105 -119692154 + AT_rich Low_complexity Low_complexity 1 21 0 6 835 1225 68 7 0 chr5 32845247 32845393 -119691866 + B1_Mm SINE Alu 1 147 0 6 835 1028 248 68 27 chr5 32845494 32845830 -119691429 + Ricksha_a DNA MuDR 216 565 -616 6 835 979 236 29 10 chr5 32846644 32846849 -119690410 + B3 SINE B2 2 210 -6 6 835 670 131 8 8 chr5 32846875 32846998 -119690261 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 6 835 537 263 22 0 chr5 32847001 32847138 -119690121 + ID_B1 SINE B4 79 218 -6 6 835 259 241 132 0 chr5 32847183 32847266 -119689993 + PB1D10 SINE Alu 23 116 -1 6 835 314 316 42 8 chr5 32847299 32847417 -119689842 + RSINE1 SINE B4 44 165 0 6 835 377 238 164 16 chr5 32847725 32847853 -119689406 + B1F2 SINE Alu 2 148 -1 6 835 1155 114 0 0 chr5 32848001 32848176 -119689083 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 6 835 1658 49 0 0 chr5 32848319 32848504 -119688755 + B2_Mm1a SINE B2 2 186 -7 6 835 341 231 0 117 chr5 32848677 32848780 -119688479 + RSINE1 SINE B4 27 117 -48 7 835 596 264 8 0 chr5 32848839 32848968 -119688291 - ID_B1 SINE B4 -2 222 93 7 835 336 319 11 0 chr5 32848885 32848979 -119688280 - PB1D10 SINE Alu -22 95 1 7 835 1277 66 0 6 chr5 32849181 32849349 -119687910 + B2_Mm2 SINE B2 2 168 -27 7 835 531 291 20 33 chr5 32849858 32850011 -119687248 - RSINE1 SINE B4 -13 152 2 7 835 404 259 14 19 chr5 32850076 32850179 -119687080 + ID_B1 SINE B4 90 189 -35 7 835 519 178 19 65 chr5 32851281 32851389 -119685870 - RLTR13C2 LTR ERVK 0 808 706 7 835 3102 96 9 7 chr5 32851550 32851971 -119685288 - BGLII_Mus LTR ERVK 0 422 1 7 835 694 251 94 147 chr5 32852082 32852559 -119684700 + RLTR12B LTR ERVK 56 507 -21 7 835 258 32 0 0 chr5 32853579 32853610 -119683649 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 835 281 276 12 84 chr5 32853610 32853693 -119683566 + PB1D10 SINE Alu 23 99 -18 7 835 1045 95 73 0 chr5 32853900 32854037 -119683222 - B1_Mus1 SINE Alu 0 148 2 7 835 381 261 54 0 chr5 32854240 32854332 -119682927 + B1F SINE Alu 45 141 -8 7 835 195 42 0 0 chr5 32854431 32854455 -119682804 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 835 1240 112 32 5 chr5 32854484 32854672 -119682587 - B2_Mm2 SINE B2 -2 193 1 7 835 24 85 0 0 chr5 32854674 32854733 -119682526 + AT_rich Low_complexity Low_complexity 1 59 0 7 835 364 261 101 17 chr5 32855259 32855438 -119681821 - Charlie1a DNA MER1_type -12 1443 1250 7 835 395 320 44 32 chr5 32855456 32855566 -119681693 + RSINE1 SINE B4 3 119 -46 7 835 360 43 0 0 chr5 32855566 32855612 -119681647 + (TC)n Simple_repeat Simple_repeat 1 46 0 7 835 395 320 44 32 chr5 32855612 32855659 -119681600 + RSINE1 SINE B4 120 161 -4 7 835 198 271 86 0 chr5 32855760 32855830 -119681429 - MIR SINE MIR -8 254 179 7 835 195 42 0 0 chr5 32855993 32856017 -119681242 + (GTTTG)n Simple_repeat Simple_repeat 5 28 0 7 835 259 254 111 14 chr5 32856019 32856091 -119681168 - ID2 SINE ID -4 79 1 7 835 531 225 271 0 chr5 32856806 32856957 -119680302 + B3 SINE B2 16 207 -9 7 835 357 258 98 108 chr5 32857179 32857383 -119679876 - MLT1A1 LTR MaLR -206 202 1 7 835 732 243 14 0 chr5 32857447 32857591 -119679668 + B1_Mur1 SINE Alu 1 146 -3 7 835 1617 48 21 0 chr5 32857632 32857821 -119679438 - B2_Mm2 SINE B2 -2 193 1 7 835 1319 236 97 24 chr5 32857931 32858214 -119679045 - MTD LTR MaLR -65 354 49 7 835 4996 155 62 58 chr5 32858214 32859193 -119678066 + RLTR13C1 LTR ERVK 1 983 0 7 835 1319 236 97 24 chr5 32859193 32859239 -119678020 - MTD LTR MaLR -371 48 1 7 835 219 233 0 23 chr5 32859307 32859351 -119677908 + B1F1 SINE Alu 16 58 -91 7 835 28 29 0 0 chr5 32859849 32859884 -119677375 + AT_rich Low_complexity Low_complexity 1 35 0 7 835 317 73 0 0 chr5 32859887 32859928 -119677331 - B1_Mus1 SINE Alu -107 41 1 7 835 477 122 0 0 chr5 32859932 32860006 -119677253 + (TATG)n Simple_repeat Simple_repeat 3 76 0 7 835 1292 58 0 11 chr5 32860007 32860183 -119677076 - B2_Mm2 SINE B2 -20 175 2 7 835 593 327 0 31 chr5 32860682 32860843 -119676416 - RSINE1 SINE B4 -8 157 2 7 835 373 246 200 0 chr5 32860859 32860989 -119676270 - ID_B1 SINE B4 0 224 69 7 835 397 264 35 0 chr5 32861000 32861087 -119676172 - B1F SINE Alu -59 90 1 7 835 542 261 209 21 chr5 32861089 32861324 -119675935 + B4A SINE B4 2 280 -12 7 835 374 263 31 10 chr5 32861681 32861777 -119675482 + PB1D10 SINE Alu 7 104 -13 7 835 564 162 36 45 chr5 32861780 32861890 -119675369 + B1_Mur1 SINE Alu 33 141 -8 7 835 264 255 77 94 chr5 32861787 32861904 -119675355 + RLTR25B LTR ERVK 441 555 -473 7 835 708 170 9 0 chr5 32862000 32862112 -119675147 + B3 SINE B2 1 113 -103 7 835 234 323 102 51 chr5 32862112 32862196 -119675063 + ID_B1 SINE B4 1 206 -18 7 835 693 215 151 19 chr5 32862196 32862376 -119674883 + L1_Mus4 LINE L1 6400 6585 -51 7 835 4622 52 2 4 chr5 32862376 32862919 -119674340 + L1Md_F2 LINE L1 6041 6582 0 7 835 2055 117 35 32 chr5 32862919 32863292 -119673967 + L1_Mus4 LINE L1 1962 2328 -1586 7 835 1816 268 29 101 chr5 32863359 32864252 -119673007 - L1_Rod LINE L1 -1222 4625 3797 7 835 23 0 0 0 chr5 32864252 32864275 -119672984 + AT_rich Low_complexity Low_complexity 1 23 0 7 835 350 390 18 48 chr5 32864427 32864594 -119672665 - RSINE1 SINE B4 -1 164 3 7 835 356 326 108 43 chr5 32864818 32865004 -119672255 - B3A SINE B2 0 198 1 7 835 467 312 62 62 chr5 32865081 32865405 -119671854 - HAL1 LINE L1 -1191 1316 993 7 835 854 233 67 5 chr5 32865649 32865843 -119671416 + B3 SINE B2 9 214 -2 7 835 1264 55 0 7 chr5 32865860 32866008 -119671251 + B1_Mm SINE Alu 1 147 0 7 835 23 33 0 0 chr5 32866034 32866064 -119671195 + AT_rich Low_complexity Low_complexity 1 30 0 7 835 1140 325 47 35 chr5 32866064 32866104 -119671155 - Lx8 LINE L1 -2 7471 7436 7 835 450 0 0 0 chr5 32866104 32866154 -119671105 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 7 835 1140 325 47 35 chr5 32866154 32866683 -119670576 - Lx8 LINE L1 -38 7435 6895 7 835 21 0 0 0 chr5 32866689 32866710 -119670549 + AT_rich Low_complexity Low_complexity 1 21 0 7 835 333 0 0 0 chr5 32866716 32866753 -119670506 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 7 835 1385 13 0 0 chr5 32866753 32866912 -119670347 - B2_Mm1t SINE B2 -33 160 2 7 835 970 242 129 79 chr5 32866933 32867351 -119669908 - RLTR28B LTR ERVL -42 439 1 7 835 626 344 51 37 chr5 32867486 32867836 -119669423 - Lx8 LINE L1 -3 7470 7116 7 835 228 309 18 0 chr5 32868374 32868429 -119668830 + ID4_ SINE ID 28 83 0 7 835 1499 94 5 0 chr5 32868503 32868695 -119668564 + B2_Mm1t SINE B2 1 193 0 7 835 4233 174 66 41 chr5 32868946 32869775 -119667484 + Lx5 LINE L1 6201 7050 0 7 835 427 317 0 16 chr5 32869778 32869903 -119667356 - MLT2C2 LTR ERVL -336 128 6 7 835 339 211 52 13 chr5 32869935 32870012 -119667247 - ID4_ SINE ID -2 81 2 7 835 365 322 84 39 chr5 32870964 32871119 -119666140 - MamGypLTR2b LTR Gypsy -15 1053 769 7 835 310 371 58 74 chr5 32871692 32871881 -119665378 - MER21B LTR ERV1 -578 285 100 7 835 484 234 80 9 chr5 32872519 32872631 -119664628 + Lx6 LINE L1 6244 6363 -687 7 835 1432 291 72 16 chr5 32872663 32873184 -119664075 + Lx6 LINE L1 6506 7432 -28 7 835 329 244 63 70 chr5 32873268 32873440 -119663819 - L1MA9 LINE L1 -261 6039 5868 7 835 441 54 0 0 chr5 32873440 32873496 -119663763 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 835 228 123 262 66 chr5 32873508 32873569 -119663690 - ID4_ SINE ID -9 74 2 7 835 407 200 186 20 chr5 32873751 32873853 -119663406 - PB1D9 SINE Alu 0 120 2 7 835 366 85 0 0 chr5 32874453 32874512 -119662747 + (T)n Simple_repeat Simple_repeat 1 59 0 7 835 264 122 0 0 chr5 32874675 32874716 -119662543 + (CACCC)n Simple_repeat Simple_repeat 4 44 0 7 835 185 0 40 0 chr5 32874732 32874757 -119662502 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 7 835 290 257 27 0 chr5 32875040 32875114 -119662145 + ID4 SINE ID 2 77 -6 7 835 552 268 83 14 chr5 32875272 32875416 -119661843 + B4A SINE B4 71 224 -68 7 835 186 43 0 0 chr5 32875416 32875439 -119661820 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 835 1110 122 31 77 chr5 32875462 32875657 -119661602 + B2_Mm2 SINE B2 1 186 -9 7 835 207 0 0 0 chr5 32876179 32876202 -119661057 + (T)n Simple_repeat Simple_repeat 1 23 0 7 835 1119 81 0 20 chr5 32876366 32876517 -119660742 + B1_Mus1 SINE Alu 1 148 0 7 835 353 20 41 0 chr5 32876517 32876566 -119660693 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 7 835 1176 93 34 28 chr5 32876580 32876757 -119660502 + B2_Mm1t SINE B2 2 179 -14 7 835 440 136 342 9 chr5 32876773 32876884 -119660375 + B2_Mm2 SINE B2 47 194 -1 7 835 189 0 0 0 chr5 32877033 32877054 -119660205 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 835 1246 68 0 0 chr5 32877065 32877211 -119660048 - B1_Mus1 SINE Alu -2 146 1 7 835 477 243 65 38 chr5 32877319 32877503 -119659756 + RLTR15 LTR ERVK 1 189 -170 7 835 924 288 33 7 chr5 32877550 32877826 -119659433 + MYSERV-int LTR ERVK 4844 5126 -1424 7 835 410 293 41 67 chr5 32877826 32878020 -119659239 + RMER4A LTR ERVK 251 439 -27 7 835 5005 164 81 69 chr5 32878020 32878328 -119658931 + MYSERV6-int LTR ERVK 7764 8075 -884 7 835 3587 111 59 20 chr5 32878328 32878871 -119658388 - LTRIS2 LTR ERV1 0 564 1 7 835 5005 164 81 69 chr5 32878871 32878945 -119658314 + MYSERV6-int LTR ERVK 8076 8155 -804 7 835 450 0 0 0 chr5 32878945 32878995 -119658264 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 7 835 5005 164 81 69 chr5 32878995 32879793 -119657466 + MYSERV6-int LTR ERVK 8156 8959 0 7 835 216 0 0 0 chr5 32879797 32879821 -119657438 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 7 835 536 248 77 133 chr5 32879821 32879873 -119657386 + RLTR15 LTR ERVK 14 54 -305 7 835 1436 59 21 36 chr5 32879873 32880066 -119657193 + B2_Mm2 SINE B2 2 191 -4 7 835 536 248 77 133 chr5 32880066 32880202 -119657057 + RLTR15 LTR ERVK 55 163 -196 7 835 1080 121 0 0 chr5 32880202 32880343 -119656916 + B1_Mus2 SINE Alu 1 141 -6 7 835 536 248 77 133 chr5 32880343 32880492 -119656767 + RLTR15 LTR ERVK 164 333 -26 7 835 300 143 20 0 chr5 32880511 32880560 -119656699 - ORR1C1 LTR MaLR -144 234 185 7 835 186 43 0 0 chr5 32880566 32880589 -119656670 + (GGGAGA)n Simple_repeat Simple_repeat 3 25 0 7 835 2479 80 72 29 chr5 32880589 32880660 -119656599 + RLTR9D LTR ERVK 1 70 -333 7 835 3271 34 78 5 chr5 32880660 32881043 -119656216 + IAPLTR2a LTR ERVK 1 411 0 7 835 2479 80 72 29 chr5 32881043 32881357 -119655902 + RLTR9D LTR ERVK 71 403 0 7 835 717 206 54 86 chr5 32881372 32881558 -119655701 - ORR1C1 LTR MaLR -198 180 1 7 835 236 288 182 0 chr5 32882073 32882139 -119655120 + PB1D10 SINE Alu 3 80 -37 7 835 230 211 0 0 chr5 32882228 32882266 -119654993 + ID4 SINE ID 5 42 -41 7 835 333 0 0 0 chr5 32882278 32882315 -119654944 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 835 458 325 0 9 chr5 32882354 32882469 -119654790 - B4A SINE B4 -2 290 177 8 835 1414 96 6 0 chr5 32882662 32882840 -119654419 + B2_Mm1t SINE B2 1 179 -14 8 835 685 238 0 70 chr5 32882875 32883060 -119654199 + B3A SINE B2 27 198 0 8 835 1086 62 7 46 chr5 32883070 32883085 -119654174 + B1_Mm SINE Alu 1 15 -132 8 835 4554 56 41 7 chr5 32883085 32883627 -119653632 - LTRIS2 LTR ERV1 0 564 5 8 835 1086 62 7 46 chr5 32883627 32883764 -119653495 + B1_Mm SINE Alu 16 147 0 8 835 238 282 55 27 chr5 32884014 32884087 -119653172 - MER91A DNA Tip100 -114 82 8 8 835 1279 61 0 0 chr5 32884141 32884288 -119652971 - B1_Mus1 SINE Alu 0 148 2 8 835 1223 209 135 39 chr5 32884331 32884553 -119652706 + ORR1D1 LTR MaLR 1 256 -118 8 835 4314 50 20 6 chr5 32884553 32885058 -119652201 + RLTR1B LTR ERV1 1 512 0 8 835 1223 209 135 39 chr5 32885058 32885169 -119652090 + ORR1D1 LTR MaLR 257 366 -8 8 835 204 339 75 17 chr5 32885294 32885414 -119651845 + MIRb SINE MIR 107 233 -35 8 835 3225 17 0 17 chr5 32885547 32885899 -119651360 - ORR1A0 LTR MaLR 0 346 1 8 835 208 302 148 23 chr5 32885925 32886013 -119651246 - L2 LINE L2 -1358 2061 1963 8 835 1529 160 96 28 chr5 32886273 32886444 -119650815 + ORR1B2 LTR MaLR 1 192 -175 8 835 4722 79 5 28 chr5 32886444 32887045 -119650214 - LTRIS_Mus LTR ERV1 0 587 1 8 835 1529 160 96 28 chr5 32887045 32887106 -119650153 + ORR1B2 LTR MaLR 193 248 -119 8 835 3878 71 85 42 chr5 32887106 32887647 -119649612 - LTRIS2 LTR ERV1 0 564 1 8 835 1529 160 96 28 chr5 32887647 32887735 -119649524 + ORR1B2 LTR MaLR 249 343 -24 8 835 437 223 43 26 chr5 32887735 32887850 -119649409 - RLTR23 LTR ERV1 0 430 314 8 835 1089 109 14 7 chr5 32888256 32888403 -119648856 + B1_Mus1 SINE Alu 1 148 0 8 835 347 141 0 15 chr5 32888403 32888468 -119648791 + A-rich Low_complexity Low_complexity 2 65 0 8 835 1325 109 15 15 chr5 32888476 32888671 -119648588 + B2_Mm2 SINE B2 1 195 0 8 835 1279 264 71 30 chr5 32888686 32888861 -119648398 + MTEa LTR MaLR 1 169 -210 8 835 396 0 0 0 chr5 32888861 32888905 -119648354 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 8 835 513 0 0 0 chr5 32888905 32888961 -119648298 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 8 835 1279 264 71 30 chr5 32888961 32889148 -119648111 + MTEa LTR MaLR 170 378 -1 8 835 750 260 43 19 chr5 32889350 32889558 -119647701 - B3 SINE B2 0 216 4 8 835 693 186 28 28 chr5 32889633 32889777 -119647482 - B1_Mur3 SINE Alu -1 148 5 8 835 274 370 38 26 chr5 32890775 32890949 -119646310 - MIR3 SINE MIR -31 177 3 8 835 280 320 146 57 chr5 32891575 32891767 -119645492 - MIR SINE MIR -34 228 20 8 835 338 0 69 17 chr5 32892022 32892080 -119645179 + (GTTTG)n Simple_repeat Simple_repeat 5 65 0 8 835 586 274 285 4 chr5 32892083 32892350 -119644909 - ORR1E LTR MaLR -17 342 1 8 835 541 234 145 10 chr5 32892701 32892908 -119644351 - L1MA6 LINE L1 -3 6297 6063 8 835 228 67 0 0 chr5 32892945 32892975 -119644284 + (T)n Simple_repeat Simple_repeat 1 30 0 8 835 653 197 81 81 chr5 32893076 32893225 -119644034 + B1_Mur4 SINE Alu 2 150 0 8 835 245 98 24 0 chr5 32893472 32893513 -119643746 + (TCC)n Simple_repeat Simple_repeat 1 42 0 8 835 315 310 40 10 chr5 32893926 32894027 -119643232 + PB1D10 SINE Alu 13 116 -1 8 835 674 231 62 6 chr5 32894034 32894195 -119643064 + B3A SINE B2 3 172 -26 8 835 344 22 0 22 chr5 32894196 32894242 -119643017 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 835 191 36 0 35 chr5 32894242 32894270 -119642989 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 8 835 589 297 65 0 chr5 32894723 32894952 -119642307 + L1MB3 LINE L1 5790 6033 -150 8 835 389 235 58 5 chr5 32895043 32895186 -119642073 + L1MB3 LINE L1 6036 6181 -2 8 835 857 192 0 0 chr5 32895198 32895344 -119641915 + B1_Mus1 SINE Alu 1 146 -2 8 835 342 292 56 9 chr5 32895377 32895484 -119641775 + PB1 SINE Alu 1 112 -15 8 835 229 227 10 83 chr5 32895484 32895580 -119641679 + GA-rich Low_complexity Low_complexity 3 91 0 8 835 231 253 35 81 chr5 32895745 32895831 -119641428 + MLT1I LTR MaLR 326 407 -4 8 835 1252 93 22 6 chr5 32895900 32896083 -119641176 + B2_Mm2 SINE B2 1 186 -9 8 835 480 326 49 14 chr5 32896115 32896258 -119641001 + RSINE1 SINE B4 3 150 -15 8 104 19659 95 109 36 chr5 32897181 32899548 -119637711 - L1_Mus3 LINE L1 -4 6634 4444 8 836 1022 73 73 0 chr5 32899548 32899685 -119637574 - B1_Mus2 SINE Alu 0 147 1 8 836 19659 123 142 68 chr5 32899685 32902729 -119634530 - L1_Mus3 LINE L1 -1440 4443 856 8 836 2350 117 17 6 chr5 32902729 32903082 -119634177 + IAPEY2_LTR LTR ERVK 1 357 0 8 836 2971 161 30 72 chr5 32903082 32903322 -119633937 - L1_Mus3 LINE L1 -5802 855 609 8 836 332 259 12 0 chr5 32903606 32903687 -119633572 - B4 SINE B4 -210 82 1 8 836 380 287 207 0 chr5 32903703 32903853 -119633406 + MLT2B4 LTR ERVL 373 553 -3 8 836 180 111 0 0 chr5 32904019 32904046 -119633213 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 8 836 3179 70 7 0 chr5 32904650 32905066 -119632193 - BGLII LTR ERVK -2 419 1 8 836 696 148 43 0 chr5 32905352 32905467 -119631792 - PB1D9 SINE Alu 0 120 1 8 836 21 36 0 0 chr5 32905501 32905529 -119631730 + AT_rich Low_complexity Low_complexity 1 28 0 8 836 1405 70 11 0 chr5 32905975 32906161 -119631098 + B2_Mm1t SINE B2 2 189 -4 8 836 319 248 102 16 chr5 32906235 32906362 -119630897 - L1MB7 LINE L1 -21 6163 6026 8 836 583 231 22 36 chr5 32907380 32907519 -119629740 - B1_Mus2 SINE Alu -1 146 10 8 836 2483 177 209 16 chr5 32907963 32908531 -119628728 + RLTR33 LTR ERVK 1 678 0 8 836 21 36 0 0 chr5 32908857 32908885 -119628374 + AT_rich Low_complexity Low_complexity 1 28 0 8 836 248 275 0 68 chr5 32909443 32909461 -119627798 - B4A SINE B4 -143 149 112 8 836 295 182 0 0 chr5 32909461 32909505 -119627754 - PB1D9 SINE Alu -69 51 8 8 836 248 275 0 68 chr5 32909505 32909517 -119627742 - B4A SINE B4 -143 111 81 8 836 1281 86 43 0 chr5 32909780 32909966 -119627293 + B2_Mm2 SINE B2 2 195 0 8 836 313 242 179 0 chr5 32910683 32910776 -119626483 - ID_B1 SINE B4 -4 220 111 8 836 255 276 53 0 chr5 32910776 32910852 -119626407 - MLT1N2 LTR MaLR -1 561 482 8 836 1413 64 37 0 chr5 32911159 32911346 -119625913 + B2_Mm2 SINE B2 2 195 0 8 836 255 309 60 99 chr5 32911583 32911734 -119625525 - MamGypLTR2b LTR Gypsy -169 753 609 8 836 693 261 0 7 chr5 32911904 32912043 -119625216 + ID_B1 SINE B4 81 218 -6 8 836 1015 85 43 0 chr5 32912231 32912372 -119624887 + B1_Mus1 SINE Alu 2 148 0 8 836 210 105 0 0 chr5 32912372 32912410 -119624849 + (A)n Simple_repeat Simple_repeat 1 38 0 8 836 181 239 0 42 chr5 32915055 32915103 -119622156 - L4 LINE RTE -1859 170 125 8 836 1264 63 40 0 chr5 32915549 32915724 -119621535 - B2_Mm2 SINE B2 -11 184 3 8 836 22 0 0 0 chr5 32915728 32915750 -119621509 + AT_rich Low_complexity Low_complexity 1 22 0 8 836 207 0 0 0 chr5 32915841 32915864 -119621395 + (T)n Simple_repeat Simple_repeat 1 23 0 8 836 22 35 0 0 chr5 32916025 32916054 -119621205 + AT_rich Low_complexity Low_complexity 1 29 0 8 836 291 28 0 0 chr5 32916271 32916307 -119620952 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 836 22 0 0 0 chr5 32916408 32916430 -119620829 + AT_rich Low_complexity Low_complexity 1 22 0 8 836 330 45 0 0 chr5 32918366 32918410 -119618849 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 836 197 83 0 27 chr5 32918607 32918644 -119618615 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 8 836 332 328 33 49 chr5 32918692 32918814 -119618445 - B1F SINE Alu -20 129 10 8 836 212 0 0 35 chr5 32918827 32918856 -119618403 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 8 836 1179 49 14 0 chr5 32918876 32919019 -119618240 - B1_Mus1 SINE Alu -2 146 2 8 836 180 162 27 0 chr5 32919289 32919326 -119617933 + L2a LINE L2 3301 3338 -88 8 836 3083 70 14 5 chr5 32919596 32920013 -119617246 + BGLII LTR ERVK 1 421 0 8 836 253 250 54 187 chr5 32920328 32920643 -119616616 + RMER10A LTR ERVL 77 349 -93 8 836 24 91 0 0 chr5 32920646 32920712 -119616547 + AT_rich Low_complexity Low_complexity 1 66 0 8 836 198 312 19 77 chr5 32920847 32920951 -119616308 + L3 LINE CR1 2220 2317 -2172 8 836 368 274 223 14 chr5 32921099 32921247 -119616012 - B3A SINE B2 -19 179 1 8 836 207 0 0 0 chr5 32921662 32921685 -119615574 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 8 836 618 74 306 0 chr5 32921685 32921784 -119615475 - B1_Mus2 SINE Alu -9 138 7 8 836 1195 99 38 11 chr5 32922093 32922277 -119614982 - B2_Mm1t SINE B2 -2 191 3 8 836 281 230 76 54 chr5 32922277 32922349 -119614910 - B1_Mus1 SINE Alu -65 83 10 8 836 264 203 46 15 chr5 32922291 32922356 -119614903 - ID_B1 SINE B4 -77 147 81 8 836 485 110 19 48 chr5 32922523 32922628 -119614631 - L1_Mus1 LINE L1 0 6567 6466 8 836 336 102 0 0 chr5 32922672 32922721 -119614538 + (TA)n Simple_repeat Simple_repeat 2 50 0 8 836 395 223 194 0 chr5 32922807 32922910 -119614349 - PB1 SINE Alu -3 124 2 8 836 203 200 20 0 chr5 32922959 32923009 -119614250 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 8 836 1184 57 0 0 chr5 32923083 32923224 -119614035 - B1_Mus1 SINE Alu -6 142 2 8 836 330 210 0 0 chr5 32923226 32923288 -119613971 - B1_Mur1 SINE Alu -43 106 45 8 836 2047 191 72 5 chr5 32923418 32923808 -119613451 - MTD LTR MaLR 0 419 4 8 836 256 270 265 17 chr5 32923842 32923959 -119613300 - B3 SINE B2 -55 161 16 8 836 423 279 7 109 chr5 32924259 32924396 -119612863 - RSINE1 SINE B4 -3 162 40 8 836 240 325 24 48 chr5 32924534 32924548 -119612711 + ID4_ SINE ID 1 42 -41 9 836 258 224 34 17 chr5 32924548 32924607 -119612652 + tRNA-Ala-GCY_ tRNA tRNA 6 65 -10 9 836 240 325 24 48 chr5 32924607 32924618 -119612641 + ID4_ SINE ID 43 82 -1 9 836 26 50 0 0 chr5 32924632 32924672 -119612587 + AT_rich Low_complexity Low_complexity 1 40 0 9 836 1196 247 64 39 chr5 32924677 32925086 -119612173 + MTD LTR MaLR 1 419 0 9 836 447 270 51 0 chr5 32925209 32925346 -119611913 + MER82 DNA MER2_type 167 310 -343 9 836 23 86 0 0 chr5 32925353 32925411 -119611848 + AT_rich Low_complexity Low_complexity 1 58 0 9 836 249 253 180 22 chr5 32925411 32925500 -119611759 - B4A SINE B4 -64 228 126 9 836 315 189 42 42 chr5 32925501 32925573 -119611686 + RMER15 LTR ERVL 1 72 -503 9 836 2080 195 98 52 chr5 32925611 32926131 -119611128 + RMER15 LTR ERVL 29 572 -3 9 836 566 286 16 8 chr5 32926135 32926262 -119610997 - B4A SINE B4 -164 128 1 9 836 381 266 194 41 chr5 32926262 32926449 -119610810 + MER82 DNA MER2_type 309 525 -128 9 836 857 189 0 33 chr5 32926956 32927109 -119610150 + B1_Mur3 SINE Alu 2 149 0 9 836 225 178 0 0 chr5 32927110 32927155 -119610104 + A-rich Low_complexity Low_complexity 1 45 0 9 836 281 278 68 14 chr5 32927298 32927371 -119609888 + ID4_ SINE ID 1 77 -6 9 836 593 253 150 52 chr5 32927393 32927626 -119609633 + MER2 DNA MER2_type 85 340 -5 9 836 337 215 152 32 chr5 32927756 32927881 -119609378 - MLT1A0 LTR MaLR 0 365 226 9 836 1320 101 16 0 chr5 32928126 32928315 -119608944 - B2_Mm2 SINE B2 -2 193 2 9 836 349 97 0 0 chr5 32928327 32928389 -119608870 - B2_Mm1a SINE B2 -5 188 127 9 836 1087 68 0 7 chr5 32928417 32928565 -119608694 - B2_Mm2 SINE B2 -47 148 2 9 836 23 54 0 0 chr5 32928770 32928807 -119608452 + AT_rich Low_complexity Low_complexity 1 37 0 9 836 1099 45 8 0 chr5 32928828 32928961 -119608298 + B1_Mus2 SINE Alu 1 134 -13 9 836 183 42 0 0 chr5 32928961 32928985 -119608274 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 836 1582 48 0 0 chr5 32929152 32929340 -119607919 - B2_Mm1t SINE B2 -4 189 2 9 836 212 0 36 0 chr5 32929375 32929403 -119607856 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 836 1190 228 35 32 chr5 32929676 32929961 -119607298 - MTD LTR MaLR -129 290 5 9 836 40 21 0 0 chr5 32930027 32930074 -119607185 + AT_rich Low_complexity Low_complexity 1 47 0 9 836 346 281 0 0 chr5 32930444 32930533 -119606726 + PB1D10 SINE Alu 27 115 -2 9 836 189 94 0 0 chr5 32930617 32930649 -119606610 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 9 836 1215 41 7 0 chr5 32930654 32930800 -119606459 - B1_Mus2 SINE Alu 0 147 1 9 836 5689 63 47 11 chr5 32930871 32932010 -119605249 - L1VL2 LINE L1 -1789 1826 666 9 836 3271 21 39 0 chr5 32932010 32932391 -119604868 + MTA_Mm LTR MaLR 1 396 0 9 836 9144 32 3 2 chr5 32932391 32933486 -119603773 + MTA_Mm-int LTR MaLR 1 1096 -2 9 836 3271 21 39 0 chr5 32933488 32933869 -119603390 + MTA_Mm LTR MaLR 1 396 0 9 836 3999 74 82 16 chr5 32933869 32934114 -119603145 - L1VL2 LINE L1 -5670 665 373 9 836 441 320 49 94 chr5 32934114 32934184 -119603075 - B4 SINE B4 0 292 123 9 836 1025 80 0 0 chr5 32934184 32934322 -119602937 - B1_Mus1 SINE Alu 0 148 11 9 836 233 345 44 33 chr5 32934310 32934400 -119602859 - MTE2b LTR MaLR -247 132 42 9 836 441 320 49 94 chr5 32934322 32934338 -119602921 - B4 SINE B4 0 122 79 9 836 288 0 0 0 chr5 32934555 32934587 -119602672 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 836 438 260 99 43 chr5 32934990 32935243 -119602016 - RLTR15 LTR ERVK -17 342 76 9 836 1039 134 78 0 chr5 32935234 32935263 -119601996 - B2_Mm1t SINE B2 0 193 152 9 836 279 0 0 0 chr5 32935263 32935294 -119601965 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 9 836 1104 101 0 0 chr5 32935294 32935443 -119601816 - B2_Mm2 SINE B2 -46 149 1 9 836 1047 202 121 23 chr5 32935562 32935953 -119601306 + RMER4B LTR ERVK 17 452 -14 9 836 186 300 60 36 chr5 32936625 32936708 -119600551 - L2 LINE L2 -938 2481 2397 9 836 281 275 102 34 chr5 32936786 32936933 -119600326 - MTEa LTR MaLR -24 355 199 9 836 705 179 99 25 chr5 32937542 32937729 -119599530 - MTE2a LTR MaLR -18 361 166 9 836 740 123 90 0 chr5 32938270 32938392 -119598867 + MTC LTR MaLR 68 200 -221 9 836 255 296 19 175 chr5 32938396 32938556 -119598703 - MTE2a LTR MaLR -244 135 1 9 836 1233 48 0 0 chr5 32938718 32938864 -119598395 + B1_Mus2 SINE Alu 1 146 -1 9 836 28 0 0 0 chr5 32938934 32938962 -119598297 + AT_rich Low_complexity Low_complexity 1 28 0 9 836 478 307 0 28 chr5 32938985 32939129 -119598130 - Lx8 LINE L1 -499 6974 6835 9 836 542 15 0 0 chr5 32939160 32939227 -119598032 + B1_Mur4 SINE Alu 83 149 -1 9 836 28 0 0 0 chr5 32939297 32939325 -119597934 + AT_rich Low_complexity Low_complexity 1 28 0 9 836 478 307 0 28 chr5 32939348 32939492 -119597767 - Lx8 LINE L1 -499 6974 6835 9 836 237 265 55 34 chr5 32940067 32940190 -119597069 + L1MB5 LINE L1 5888 6005 -174 9 836 964 196 74 0 chr5 32940790 32940979 -119596280 + B3 SINE B2 3 205 -11 9 836 384 307 12 95 chr5 32941067 32941206 -119596053 - B4A SINE B4 -122 170 45 9 836 412 132 383 9 chr5 32941206 32941313 -119595946 - B1_Mus2 SINE Alu 0 147 1 9 836 384 307 12 95 chr5 32941313 32941342 -119595917 - B4A SINE B4 -248 44 17 9 836 742 152 258 22 chr5 32941342 32941524 -119595735 - URR1B DNA MER1_type 0 225 1 9 836 361 271 49 79 chr5 32942448 32942612 -119594647 - MT2B LTR ERVL -263 338 180 9 836 602 184 17 60 chr5 32942518 32942634 -119594625 - B1_Mur1 SINE Alu -38 111 1 9 836 264 59 0 0 chr5 32943175 32943209 -119594050 + (T)n Simple_repeat Simple_repeat 1 34 0 9 836 265 311 9 46 chr5 32943397 32943505 -119593754 - L2c LINE L2 -1 3386 3283 9 836 419 328 181 15 chr5 32943624 32943757 -119593502 - RSINE1 SINE B4 -8 157 3 9 836 747 82 14 88 chr5 32944214 32944361 -119592898 - L1_Mus3 LINE L1 -5 6633 6498 9 836 1008 98 7 0 chr5 32944362 32944515 -119592744 + L1_Mus3 LINE L1 6166 6319 -319 9 836 313 174 10 61 chr5 32944843 32944941 -119592318 - Lx8 LINE L1 0 7473 7381 9 836 240 316 65 36 chr5 32945060 32945198 -119592061 - L2a LINE L2 -64 3362 3221 9 836 651 232 115 33 chr5 32945530 32945713 -119591546 + B3A SINE B2 1 198 0 9 836 283 351 45 19 chr5 32945888 32946045 -119591214 - L2a LINE L2 -898 2521 2361 9 836 430 301 0 9 chr5 32946317 32946431 -119590828 + PB1D9 SINE Alu 1 113 -7 9 836 401 234 181 0 chr5 32946530 32946735 -119590524 + L1MA8 LINE L1 6006 6247 -44 9 836 21 0 0 0 chr5 32946811 32946832 -119590427 + AT_rich Low_complexity Low_complexity 1 21 0 9 836 1547 31 10 16 chr5 32947497 32947691 -119589568 - B2_Mm1a SINE B2 0 193 1 9 836 554 259 22 29 chr5 32947908 32948047 -119589212 + B1F1 SINE Alu 5 142 -7 9 836 479 259 58 15 chr5 32948914 32949051 -119588208 + MER20 DNA MER1_type 1 143 -76 9 836 1334 89 16 5 chr5 32949155 32949346 -119587913 + B2_Mm2 SINE B2 1 193 -2 9 836 228 233 113 32 chr5 32949418 32949480 -119587779 + PB1D7 SINE Alu 56 134 -15 9 836 4922 55 16 14 chr5 32949686 32950326 -119586933 - L1Md_F2 LINE L1 -2 6580 5940 9 836 464 252 9 9 chr5 32950441 32950549 -119586710 - PB1D10 SINE Alu -1 116 9 9 836 320 349 12 0 chr5 32950653 32950736 -119586523 - RSINE1 SINE B4 -14 151 68 9 836 225 136 152 0 chr5 32950904 32950963 -119586296 + L1M4 LINE L1 5830 5897 -281 9 836 398 331 14 34 chr5 32951098 32951245 -119586014 - RSINE1 SINE B4 -19 146 3 9 836 468 0 0 0 chr5 32951248 32951301 -119585958 - ORR1A1 LTR MaLR 0 346 294 9 836 1047 28 139 0 chr5 32951307 32951451 -119585808 - ORR1A1 LTR MaLR -182 164 1 9 836 13322 65 9 4 chr5 32951451 32953233 -119584026 - ORR1A1-int LTR MaLR 0 1792 1 9 836 2616 40 65 0 chr5 32953233 32953558 -119583701 - ORR1A1 LTR MaLR 0 346 1 9 836 324 194 81 10 chr5 32953559 32953658 -119583601 + L1MB8 LINE L1 6026 6131 -47 9 836 31 26 0 0 chr5 32953681 32953719 -119583540 + AT_rich Low_complexity Low_complexity 1 38 0 9 836 252 0 0 0 chr5 32954510 32954538 -119582721 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 9 836 191 194 0 27 chr5 32954846 32954920 -119582339 + T-rich Low_complexity Low_complexity 3 74 0 9 836 900 75 101 29 chr5 32954968 32955106 -119582153 - B1_Mus1 SINE Alu 0 148 1 9 836 898 109 36 0 chr5 32955109 32955247 -119582012 - B1_Mus1 SINE Alu 0 148 6 9 836 320 250 0 0 chr5 32955779 32955839 -119581420 - RSINE1 SINE B4 -75 90 31 9 836 221 274 51 76 chr5 32956144 32956223 -119581036 + ID4_ SINE ID 5 81 -2 9 836 311 250 0 0 chr5 32956884 32956944 -119580315 + PB1D10 SINE Alu 12 71 -46 9 836 314 268 103 0 chr5 32956976 32957073 -119580186 + MIRb SINE MIR 27 133 -135 9 836 462 156 147 59 chr5 32957277 32957379 -119579880 + PB1D9 SINE Alu 1 111 -9 9 836 21 57 0 0 chr5 32957679 32957714 -119579545 + AT_rich Low_complexity Low_complexity 1 35 0 9 836 1377 53 32 11 chr5 32958033 32958223 -119579036 - B2_Mm2 SINE B2 0 195 2 9 836 215 204 0 0 chr5 32958335 32958379 -119578880 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 9 836 1746 275 103 36 chr5 32958394 32959151 -119578108 - Lx7 LINE L1 -375 7321 6514 9 836 345 242 0 0 chr5 32959249 32959311 -119577948 - RSINE1 SINE B4 -96 69 8 9 836 23 0 0 0 chr5 32959858 32959881 -119577378 + AT_rich Low_complexity Low_complexity 1 23 0 9 836 302 310 0 57 chr5 32960481 32960604 -119576655 - BC1_Mm scRNA scRNA -35 117 2 9 836 310 211 9 9 chr5 32961004 32961119 -119576140 + (TA)n Simple_repeat Simple_repeat 1 115 0 9 836 207 0 0 0 chr5 32961119 32961142 -119576117 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 836 207 0 0 0 chr5 32961151 32961174 -119576085 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 9 836 1180 70 0 0 chr5 32961176 32961318 -119575941 - B1_Mus1 SINE Alu -6 142 1 9 836 302 280 39 39 chr5 32961483 32961587 -119575672 + HAL1-3A_ME LINE L1 1960 2063 -795 9 836 641 170 94 22 chr5 32961826 32961964 -119575295 + B1_Mur4 SINE Alu 2 149 -1 9 836 324 0 0 0 chr5 32962027 32962063 -119575196 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 9 836 225 0 0 0 chr5 32962063 32962088 -119575171 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 9 836 283 329 121 79 chr5 32962463 32962628 -119574631 - MER58C DNA MER1_type -36 179 8 1 836 206 287 17 25 chr5 32962770 32962809 -119574450 + T-rich Low_complexity Low_complexity 79 117 0 1 836 1251 41 0 0 chr5 32962809 32962955 -119574304 - B1_Mus2 SINE Alu -1 146 1 1 836 223 260 13 13 chr5 32962955 32963033 -119574226 + (TTG)n Simple_repeat Simple_repeat 1 78 0 1 836 358 302 9 19 chr5 32963466 32963574 -119573685 + LSU-rRNA_Hsa rRNA rRNA 4885 4991 -44 1 836 295 304 65 105 chr5 32963598 32963780 -119573479 + B4A SINE B4 105 281 -11 1 836 227 282 121 60 chr5 32964096 32964179 -119573080 - RSINE1 SINE B4 0 165 78 1 836 261 341 70 41 chr5 32964210 32964381 -119572878 - B4A SINE B4 -116 176 1 1 836 519 241 95 0 chr5 32964645 32964726 -119572533 - B1_Mur4 SINE Alu 0 150 68 1 836 1487 53 27 0 chr5 32964726 32964913 -119572346 - B2_Mm1t SINE B2 0 193 2 1 836 519 241 95 0 chr5 32964913 32964968 -119572291 - B1_Mur4 SINE Alu -83 67 2 1 836 1050 189 56 5 chr5 32964989 32965186 -119572073 - B3 SINE B2 0 216 10 1 836 634 261 12 30 chr5 32965613 32965779 -119571480 + RSINE1 SINE B4 3 165 0 1 836 393 278 146 81 chr5 32965954 32966139 -119571120 + ID_B1 SINE B4 91 290 -2 1 836 340 212 83 48 chr5 32966196 32966270 -119570989 + PB1D10 SINE Alu 13 91 -26 1 836 306 0 0 0 chr5 32966270 32966304 -119570955 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 836 191 32 65 0 chr5 32966304 32966334 -119570925 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 1 836 706 192 48 0 chr5 32967699 32967824 -119569435 + B1_Mur3 SINE Alu 13 143 -6 1 836 3100 254 63 49 chr5 32967840 32968225 -119569034 - Lx7 LINE L1 -366 7330 6930 1 836 2264 155 35 20 chr5 32968225 32968438 -119568821 - MTB_Mm LTR MaLR 0 407 184 1 836 315 0 0 0 chr5 32968438 32968473 -119568786 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 836 2264 155 35 20 chr5 32968473 32968660 -119568599 - MTB_Mm LTR MaLR -224 183 1 1 836 3100 254 63 49 chr5 32968660 32969381 -119567878 - Lx7 LINE L1 -767 6929 6208 1 836 590 194 36 107 chr5 32969412 32969608 -119567651 + L1_Mur3 LINE L1 4799 4980 -900 1 836 2349 240 53 48 chr5 32969612 32970457 -119566802 - MYSERV16_I-int LTR ERVK -497 1829 977 1 836 3141 12 0 0 chr5 32970457 32970803 -119566456 - ORR1A0 LTR MaLR 0 346 1 1 836 2349 240 53 48 chr5 32970803 32970901 -119566358 - MYSERV16_I-int LTR ERVK -1350 976 881 1 836 912 82 8 0 chr5 32970910 32971044 -119566215 + B1_Mus2 SINE Alu 4 138 -9 1 836 186 43 0 0 chr5 32971044 32971067 -119566192 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 836 982 118 19 19 chr5 32971070 32971226 -119566033 + B2_Mm1t SINE B2 37 192 -1 1 836 1159 155 154 8 chr5 32971225 32971478 -119565781 - RLTR15 LTR ERVK -69 290 1 1 836 726 212 6 0 chr5 32971478 32971638 -119565621 + L1_Mur3 LINE L1 4989 5149 -731 1 836 350 332 142 0 chr5 32971720 32971946 -119565313 + L2 LINE L2 902 1159 -2260 1 836 25036 76 14 4 chr5 32972026 32974895 -119562364 - L1_Mus2 LINE L1 0 6566 3664 1 836 3134 27 53 0 chr5 32974895 32975271 -119561988 - MTA_Mm LTR MaLR 0 396 1 1 836 25036 89 10 5 chr5 32975271 32976772 -119560487 - L1_Mus2 LINE L1 -2220 3663 2159 1 836 4404 14 2 0 chr5 32976772 32977264 -119559995 - MT2_Mm LTR ERVL 0 493 1 1 836 302 0 0 0 chr5 32977264 32977302 -119559957 - MERVL-int LTR ERVL 0 5485 5448 1 836 390 167 46 35 chr5 32977302 32977389 -119559870 - ORR1A3-int LTR MaLR -1323 640 553 1 836 37262 17 27 13 chr5 32977389 32978054 -119559205 - MERVL-int LTR ERVL -125 5360 4679 1 836 225 123 29 174 chr5 32978054 32978123 -119559136 + RLTR22_Mus LTR ERVK 370 428 -1380 1 836 37262 17 27 13 chr5 32978123 32982676 -119554583 - MERVL-int LTR ERVL -125 4678 1 1 836 4404 14 2 0 chr5 32982676 32983168 -119554091 - MT2_Mm LTR ERVL 0 493 1 1 836 1019 57 0 19 chr5 32983168 32983329 -119553930 - L1Md_F LINE L1 -3720 2166 2009 1 836 2454 180 6 15 chr5 32983332 32983897 -119553362 - L1Md_F LINE L1 -5411 1208 642 1 836 417 252 16 8 chr5 32983905 32984033 -119553226 - L1Md_F LINE L1 -5813 806 678 1 836 318 258 26 152 chr5 32984116 32984267 -119552992 - L1VL1 LINE L1 -6262 160 29 1 836 309 282 9 55 chr5 32984902 32985011 -119552248 - RMER4B LTR ERVK -474 111 8 1 836 1623 147 60 3 chr5 32985236 32985536 -119551723 - RLTR28 LTR ERVL -4 520 204 1 836 885 36 0 26 chr5 32985559 32985674 -119551585 - B1_Mm SINE Alu 0 147 36 1 836 1352 119 99 0 chr5 32985669 32985871 -119551388 - RLTR28 LTR ERVL -302 222 1 1 836 1313 149 22 13 chr5 32985943 32986167 -119551092 - URR1A DNA MER1_type 0 226 1 1 836 1181 217 137 30 chr5 32986189 32986526 -119550733 - ORR1C2 LTR MaLR -11 373 1 1 836 453 295 29 0 chr5 32986526 32986631 -119550628 + PB1D9 SINE Alu 1 108 -12 1 836 770 103 0 17 chr5 32986634 32986752 -119550507 - ORR1B1 LTR MaLR -238 156 41 1 836 26 30 0 0 chr5 32988666 32988699 -119548560 + AT_rich Low_complexity Low_complexity 1 33 0 1 836 34 55 0 0 chr5 32989361 32989416 -119547843 + AT_rich Low_complexity Low_complexity 1 55 0 1 836 573 231 30 15 chr5 32990013 32990145 -119547114 + B1_Mur1 SINE Alu 13 146 -3 1 836 737 246 138 34 chr5 32990520 32990673 -119546586 - MT2B2 LTR ERVL -13 571 385 1 836 1393 75 11 0 chr5 32990673 32990860 -119546399 + B2_Mm1a SINE B2 2 190 -3 1 836 737 179 101 192 chr5 32990860 32991107 -119546152 - MT2B2 LTR ERVL -200 384 14 1 836 225 0 0 0 chr5 32991133 32991158 -119546101 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 836 1974 226 135 82 chr5 32991288 32991500 -119545759 - RCHARR1 DNA MER1_type 0 974 755 1 836 435 219 140 0 chr5 32991500 32991614 -119545645 - B1F SINE Alu -19 130 1 1 836 1974 226 135 82 chr5 32991614 32992149 -119545110 - RCHARR1 DNA MER1_type -220 754 187 1 836 183 80 0 0 chr5 32992201 32992226 -119545033 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 836 321 26 0 0 chr5 32992234 32992272 -119544987 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 1 836 276 338 26 0 chr5 32992637 32992714 -119544545 + B4 SINE B4 82 160 -132 1 836 186 103 0 0 chr5 32992838 32992867 -119544392 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 1 836 196 266 61 30 chr5 32992929 32992995 -119544264 + MIR3 SINE MIR 120 187 -21 1 836 1239 34 0 20 chr5 32993009 32993159 -119544100 + B1_Mm SINE Alu 1 147 0 1 836 485 274 96 19 chr5 32993465 32993621 -119543638 + MLT1A1 LTR MaLR 241 408 0 1 836 340 301 30 30 chr5 32993669 32993868 -119543391 + L1M5 LINE L1 3921 4119 -2027 1 836 247 258 52 82 chr5 32994309 32994406 -119542853 + PB1 SINE Alu 1 94 -33 1 836 258 32 0 0 chr5 32994437 32994468 -119542791 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 1 836 243 282 14 14 chr5 32994474 32994546 -119542713 - tRNA-Ala-GCA tRNA tRNA -3 72 1 1 836 487 101 0 0 chr5 32994483 32994552 -119542707 - B4 SINE B4 -223 69 1 1 836 1049 79 29 7 chr5 32995496 32995629 -119541630 + B1_Mm SINE Alu 3 139 -8 1 836 363 73 0 0 chr5 32995629 32995684 -119541575 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1 836 656 273 91 0 chr5 32998247 32998275 -119538984 - B3A SINE B2 -5 193 165 1 836 261 118 0 0 chr5 32998275 32998326 -119538933 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 1 836 656 273 91 0 chr5 32998326 32998473 -119538786 - B3A SINE B2 -34 164 3 1 836 25 51 0 0 chr5 32998482 32998521 -119538738 + AT_rich Low_complexity Low_complexity 1 39 0 1 836 364 248 96 52 chr5 32998742 32998857 -119538402 + PB1D7 SINE Alu 1 120 0 1 836 3602 58 17 11 chr5 32999206 32999677 -119537582 - L1_Mus1 LINE L1 0 6567 6094 1 836 229 350 10 20 chr5 32999719 32999818 -119537441 + MIRc SINE MIR 32 129 -139 1 836 189 0 0 0 chr5 33001428 33001449 -119535810 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1 836 35735 69 21 3 chr5 33001478 33007368 -119529891 - L1Md_F2 LINE L1 -1 6581 584 2 836 1224 76 0 0 chr5 33007353 33007511 -119529748 + L1_Mus3 LINE L1 5705 5862 -776 3 836 595 317 175 27 chr5 33007678 33008182 -119529077 - MER21B LTR ERV1 -246 617 39 4 836 298 282 102 24 chr5 33008422 33008549 -119528710 + MIRb SINE MIR 102 238 -30 5 836 24 67 0 0 chr5 33008568 33008613 -119528646 + AT_rich Low_complexity Low_complexity 1 45 0 6 836 233 299 28 69 chr5 33008654 33008726 -119528533 - MamGypLTR2 LTR Gypsy -883 306 238 7 836 301 347 0 0 chr5 33009333 33009408 -119527851 - ID4_ SINE ID 0 83 9 8 836 180 318 0 120 chr5 33009531 33009631 -119527628 + MIRb SINE MIR 34 121 -147 9 836 1223 68 0 0 chr5 33009986 33010132 -119527127 + B1_Mus1 SINE Alu 3 148 0 1 836 378 236 140 70 chr5 33010150 33010364 -119526895 - Lx9 LINE L1 -32 7612 7384 1 836 603 230 54 71 chr5 33010487 33010726 -119526533 - Lx9 LINE L1 -451 7193 6959 1 836 271 275 0 91 chr5 33011704 33011792 -119525467 - ID4_ SINE ID -1 82 3 1 836 24 0 0 0 chr5 33012174 33012198 -119525061 + AT_rich Low_complexity Low_complexity 1 24 0 1 836 243 315 63 76 chr5 33012507 33012749 -119524510 + MIR SINE MIR 19 251 -11 1 836 565 311 73 0 chr5 33012823 33012974 -119524285 + RSINE1 SINE B4 2 163 -2 1 836 769 209 187 0 chr5 33013007 33013189 -119524070 + B3 SINE B2 1 216 0 1 836 1569 48 37 0 chr5 33013195 33013382 -119523877 + B2_Mm2 SINE B2 2 195 0 1 836 2719 95 10 21 chr5 33013577 33013593 -119523666 - L1_Mus3 LINE L1 0 6638 6623 1 836 1239 55 7 0 chr5 33013593 33013738 -119523521 - B1_Mus2 SINE Alu -1 146 1 1 836 2719 95 10 21 chr5 33013738 33013921 -119523338 - L1_Mus3 LINE L1 -16 6622 6443 1 836 7138 58 43 0 chr5 33013921 33014777 -119522482 + RLTR13B1 LTR ERVK 1 893 0 2 836 2719 95 10 21 chr5 33014777 33014963 -119522296 - L1_Mus3 LINE L1 -196 6442 6256 1 836 237 305 0 17 chr5 33014985 33015045 -119522214 + ID2 SINE ID 1 59 -24 2 837 206 348 98 14 chr5 33066662 33066805 -119470454 + L2b LINE L2 3214 3368 -7 2 837 276 179 96 82 chr5 33067852 33067925 -119469334 + B4A SINE B4 11 84 -208 2 837 338 141 56 14 chr5 33067941 33068013 -119469246 - RMER4A LTR ERVK 0 466 392 2 837 210 37 0 0 chr5 33068023 33068050 -119469209 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 837 1415 126 67 0 chr5 33068050 33068289 -119468970 - RMER4A LTR ERVK -119 347 93 2 837 492 260 81 48 chr5 33068322 33068508 -119468751 + B4A SINE B4 101 292 0 2 837 685 238 0 40 chr5 33068534 33068683 -119468576 - B1_Mur1 SINE Alu 0 149 7 2 837 741 119 8 33 chr5 33068742 33068864 -119468395 + B1_Mur4 SINE Alu 32 150 0 2 837 429 20 0 0 chr5 33069509 33069559 -119467700 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2 837 355 338 29 29 chr5 33069736 33069873 -119467386 - MT2A LTR ERVL -155 378 242 2 837 966 98 95 79 chr5 33069910 33070099 -119467160 - B2_Mm2 SINE B2 -2 193 2 3 837 189 0 0 0 chr5 33070217 33070238 -119467021 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 837 714 139 16 8 chr5 33070238 33070361 -119466898 - B1_Mur4 SINE Alu -11 139 16 3 837 261 244 123 85 chr5 33070271 33070401 -119466858 - MT2A LTR ERVL -327 257 123 2 837 274 262 48 0 chr5 33070458 33070542 -119466717 + PB1 SINE Alu 15 102 -25 3 837 201 156 0 0 chr5 33070550 33070582 -119466677 + CT-rich Low_complexity Low_complexity 2 33 0 3 837 1991 187 70 2 chr5 33070668 33071065 -119466194 - Lx9 LINE L1 -182 7462 7039 3 837 3459 18 0 0 chr5 33074126 33074522 -119462737 + MTA_Mm LTR MaLR 1 396 0 3 837 8787 36 4 1 chr5 33074522 33075617 -119461642 + MTA_Mm-int LTR MaLR 1 1098 0 3 837 3459 18 0 0 chr5 33075617 33076013 -119461246 + MTA_Mm LTR MaLR 1 396 0 3 837 441 255 20 0 chr5 33077399 33077497 -119459762 + PB1D10 SINE Alu 12 111 -6 3 837 29 0 0 0 chr5 33088653 33088682 -119448577 + GC_rich Low_complexity Low_complexity 1 29 0 3 837 362 203 13 13 chr5 33090239 33090314 -119446945 + B4 SINE B4 1 75 -217 3 837 453 246 23 53 chr5 33091090 33091223 -119446036 - B1F SINE Alu 0 149 21 4 837 243 0 0 0 chr5 33091824 33091851 -119445408 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 4 837 1320 90 21 0 chr5 33092206 33092395 -119444864 - B2_Mm2 SINE B2 -2 193 1 4 837 455 271 107 118 chr5 33092435 33092715 -119444544 + B4 SINE B4 2 278 -14 4 837 382 248 38 9 chr5 33092808 33092914 -119444345 + PB1D7 SINE Alu 11 119 -1 4 837 1179 194 139 22 chr5 33092961 33093278 -119443981 + ORR1C2 LTR MaLR 14 367 -17 4 837 583 219 121 6 chr5 33093279 33093444 -119443815 + RLTR28B LTR ERVL 1 184 -297 4 837 386 274 35 26 chr5 33093729 33093845 -119443414 + MT2B LTR ERVL 141 257 -344 4 837 625 220 83 0 chr5 33093758 33093890 -119443369 + B1_Mus1 SINE Alu 6 148 0 4 837 21 36 0 0 chr5 33093895 33093923 -119443336 + AT_rich Low_complexity Low_complexity 1 28 0 4 837 263 243 223 0 chr5 33094166 33094269 -119442990 + RMER20B LTR ERVK 180 305 -322 5 837 433 202 59 76 chr5 33094807 33094925 -119442334 - B3 SINE B2 -100 116 1 5 837 536 265 40 7 chr5 33094928 33095080 -119442179 - B4 SINE B4 -66 226 70 5 837 322 175 0 0 chr5 33095578 33095635 -119441624 - B4A SINE B4 -235 57 1 5 837 371 243 62 45 chr5 33095704 33095816 -119441443 - PB1 SINE Alu -3 124 11 5 837 387 243 9 36 chr5 33095885 33095996 -119441263 - B1F1 SINE Alu -1 148 41 5 837 1472 48 16 0 chr5 33096406 33096595 -119440664 - B2_Mm2 SINE B2 -1 194 3 5 837 1146 48 0 13 chr5 33097329 33097478 -119439781 + B1_Mus2 SINE Alu 1 147 0 5 837 279 0 0 0 chr5 33097478 33097509 -119439750 + (A)n Simple_repeat Simple_repeat 1 31 0 5 837 615 241 58 8 chr5 33097724 33097902 -119439357 - B3 SINE B2 -3 192 1 5 837 833 248 14 14 chr5 33098442 33098651 -119438608 - B3 SINE B2 -7 209 1 5 837 621 62 321 0 chr5 33098803 33098915 -119438344 - B1_Mus1 SINE Alu 0 148 1 6 837 312 194 30 0 chr5 33099207 33099274 -119437985 + Charlie4z DNA MER1_type 10 78 -89 6 837 562 128 174 0 chr5 33099364 33099473 -119437786 + B1_Mus2 SINE Alu 1 128 -19 6 837 566 267 83 18 chr5 33099780 33099948 -119437311 + B3 SINE B2 32 210 -6 6 837 357 298 79 58 chr5 33099970 33100011 -119437248 + L1ME2 LINE L1 5519 5552 -627 6 837 1053 95 0 0 chr5 33100011 33100159 -119437100 - B1_Mus1 SINE Alu 0 148 1 6 837 357 298 79 58 chr5 33100159 33100256 -119437003 + L1ME2 LINE L1 5553 5660 -519 6 837 351 272 11 32 chr5 33100271 33100366 -119436893 + B3 SINE B2 57 149 -67 6 837 303 49 0 0 chr5 33100374 33100415 -119436844 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 6 837 973 114 71 12 chr5 33100466 33100634 -119436625 + B2_Mm2 SINE B2 2 179 -16 6 837 428 320 82 4 chr5 33100730 33100996 -119436263 + MER47B DNA MER2_type 68 418 0 6 837 223 191 29 0 chr5 33101059 33101127 -119436132 + CT-rich Low_complexity Low_complexity 3 72 0 7 837 447 240 79 8 chr5 33101138 33101264 -119435995 - B1F2 SINE Alu -10 139 5 7 837 283 244 38 13 chr5 33101388 33101467 -119435792 + L1ME2 LINE L1 6058 6138 -26 6 837 338 202 64 53 chr5 33101471 33101565 -119435694 + PB1D7 SINE Alu 16 110 -10 7 837 252 86 0 0 chr5 33101565 33101600 -119435659 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 837 1030 233 5 15 chr5 33101673 33101878 -119435381 + ID_B1 SINE B4 2 204 -20 7 837 504 117 0 0 chr5 33101881 33101958 -119435301 + (TCC)n Simple_repeat Simple_repeat 3 79 0 7 837 762 170 65 7 chr5 33102658 33102812 -119434447 + MTC LTR MaLR 251 413 -8 7 837 2113 43 0 0 chr5 33102838 33103114 -119434145 + RLTR10A LTR ERVK 1 276 -135 7 837 1180 109 0 11 chr5 33103137 33103322 -119433937 + RLTR27 LTR ERVK 127 309 0 7 837 655 235 19 7 chr5 33103322 33103472 -119433787 + MTC-int LTR MaLR 19 170 -1088 7 837 292 220 25 152 chr5 33103869 33103920 -119433339 + MTC-int LTR MaLR 208 258 -1000 7 837 1142 68 0 0 chr5 33103920 33104067 -119433192 + B1_Mus1 SINE Alu 2 148 0 8 837 292 220 25 152 chr5 33104067 33104133 -119433126 + MTC-int LTR MaLR 259 310 -948 7 837 237 114 68 0 chr5 33104139 33104183 -119433076 - ORR1B1 LTR MaLR -347 47 1 8 837 5138 182 118 7 chr5 33104183 33105167 -119432092 - ORR1B1-int LTR MaLR 0 1509 413 8 837 243 0 0 0 chr5 33105167 33105194 -119432065 + (CAA)n Simple_repeat Simple_repeat 1 27 0 8 837 5138 182 118 7 chr5 33105194 33105423 -119431836 - ORR1B1-int LTR MaLR -1097 412 162 8 837 229 274 38 29 chr5 33105924 33106028 -119431231 + B1F1 SINE Alu 13 149 0 8 837 267 333 0 0 chr5 33106042 33106111 -119431148 + ID4_ SINE ID 15 83 0 8 837 190 193 0 34 chr5 33106119 33106178 -119431081 + GA-rich Low_complexity Low_complexity 4 60 0 8 837 196 386 9 17 chr5 33106311 33106427 -119430832 - MIR3 SINE MIR -12 196 82 8 837 292 255 0 97 chr5 33106655 33106768 -119430491 - B4A SINE B4 -1 291 190 8 837 423 0 0 0 chr5 33108003 33108050 -119429209 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 8 837 653 206 50 0 chr5 33108055 33108196 -119429063 + B1_Mur1 SINE Alu 2 149 0 8 837 292 161 71 0 chr5 33108443 33108499 -119428760 + L1MA6 LINE L1 5884 5943 -357 9 837 287 219 137 0 chr5 33108502 33108575 -119428684 + ID4 SINE ID 1 83 0 9 837 444 194 36 27 chr5 33108834 33108945 -119428314 + PB1D10 SINE Alu 6 117 0 9 837 403 295 51 152 chr5 33109106 33109342 -119427917 - ID_B1 SINE B4 -1 223 12 9 837 326 291 25 0 chr5 33109442 33109521 -119427738 - RSINE1 SINE B4 -80 85 5 9 837 513 0 0 0 chr5 33109852 33109909 -119427350 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 837 563 175 364 0 chr5 33109910 33110064 -119427195 - B3 SINE B2 -6 210 1 9 837 1276 86 37 0 chr5 33110135 33110322 -119426937 + B2_Mm2 SINE B2 1 194 -1 9 837 319 259 118 62 chr5 33110616 33110760 -119426499 + RLTR14 LTR ERV1 224 375 -7 9 837 367 261 81 0 chr5 33110877 33110988 -119426271 - PB1D7 SINE Alu 0 120 1 9 837 356 230 29 29 chr5 33111023 33111126 -119426133 - B3A SINE B2 -1 197 95 1 837 566 231 97 14 chr5 33112369 33112514 -119424745 + RLTR42-int LTR ERVK 1639 1795 -3727 1 837 23 0 0 0 chr5 33113177 33113200 -119424059 + AT_rich Low_complexity Low_complexity 1 23 0 1 837 282 354 8 0 chr5 33113911 33114038 -119423221 + MER52-int LTR ERV1 1734 1861 -5230 1 837 468 51 0 0 chr5 33114535 33114594 -119422665 + (GAGAA)n Simple_repeat Simple_repeat 2 60 0 1 837 299 164 229 0 chr5 33114804 33114865 -119422394 + RLTR42-int LTR ERVK 2872 2946 -2576 1 837 812 179 7 7 chr5 33114875 33115021 -119422238 + B1_Mus2 SINE Alu 2 147 0 1 837 267 294 107 16 chr5 33115282 33115403 -119421856 + RLTR42-int LTR ERVK 4108 4239 -1283 1 837 443 208 29 53 chr5 33116038 33116177 -119421082 - B3A SINE B2 -69 126 1 1 837 289 326 0 10 chr5 33116631 33116730 -119420529 - PB1D10 SINE Alu -15 102 5 1 837 1049 59 73 0 chr5 33117317 33117453 -119419806 + B1_Mus1 SINE Alu 2 147 -1 1 837 960 176 129 40 chr5 33117572 33117820 -119419439 + RMER1C Other Other 1069 1338 -4 1 837 724 254 0 47 chr5 33117842 33118032 -119419227 - B3A SINE B2 -16 182 2 1 837 346 300 33 0 chr5 33118057 33118147 -119419112 - PB1D10 SINE Alu -24 93 1 1 837 291 215 24 60 chr5 33118389 33118473 -119418786 - PB1D9 SINE Alu -18 102 22 1 837 216 0 0 0 chr5 33119098 33119122 -119418137 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 837 333 0 0 0 chr5 33119122 33119158 -119418101 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 837 541 257 27 48 chr5 33119214 33119361 -119417898 - B1_Mur1 SINE Alu -5 144 1 1 837 1227 66 0 6 chr5 33119455 33119622 -119417637 - B2_Mm2 SINE B2 -29 166 1 1 837 798 102 46 23 chr5 33120735 33120866 -119416393 - B1_Mus1 SINE Alu -9 139 6 1 837 465 286 95 58 chr5 33120991 33121188 -119416071 - B4A SINE B4 -42 250 41 1 837 1223 198 178 6 chr5 33121188 33121514 -119415745 + ORR1C2 LTR MaLR 1 382 -2 1 837 465 286 95 58 chr5 33121514 33121557 -119415702 - B4A SINE B4 -252 40 1 1 837 736 125 8 8 chr5 33121574 33121695 -119415564 - B1_Mus1 SINE Alu -16 132 12 1 837 344 245 0 101 chr5 33121607 33121716 -119415543 - MT2B LTR ERVL -348 253 156 1 837 766 198 112 0 chr5 33121713 33121900 -119415359 - B3 SINE B2 0 216 9 1 837 1079 195 172 0 chr5 33121906 33122168 -119415091 + MTC LTR MaLR 107 413 -8 1 837 1847 241 112 135 chr5 33122171 33123628 -119413631 + MTC-int LTR MaLR 2 1258 0 1 837 440 132 66 0 chr5 33123628 33123704 -119413555 + MTC LTR MaLR 1 81 -340 1 837 823 170 7 0 chr5 33123708 33123843 -119413416 + B1_Mur4 SINE Alu 2 137 -13 1 837 456 19 0 0 chr5 33123843 33123896 -119413363 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 1 837 270 0 0 0 chr5 33123897 33123927 -119413332 + (CAGG)n Simple_repeat Simple_repeat 1 30 0 1 837 920 42 0 0 chr5 33123927 33124046 -119413213 + B1_Mus1 SINE Alu 30 148 0 1 837 884 174 33 7 chr5 33124056 33124282 -119412977 + MTC LTR MaLR 48 412 -9 1 837 867 140 21 14 chr5 33124534 33124679 -119412580 - B1_Mur4 SINE Alu 0 150 5 1 837 446 262 124 26 chr5 33124733 33124895 -119412364 + B3 SINE B2 51 210 -6 1 837 198 297 62 0 chr5 33125101 33125165 -119412094 + MIRm SINE MIR 88 155 -121 1 837 669 144 8 33 chr5 33125269 33125391 -119411868 + B3 SINE B2 2 120 -96 1 837 851 235 6 6 chr5 33125453 33125633 -119411626 - B3 SINE B2 -11 205 26 1 837 980 132 7 7 chr5 33125643 33125788 -119411471 - B1_Mus2 SINE Alu -1 146 2 1 837 714 201 171 0 chr5 33125941 33126105 -119411154 - B3 SINE B2 -24 192 1 1 837 221 0 35 0 chr5 33126245 33126274 -119410985 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 837 666 250 43 0 chr5 33126275 33126439 -119410820 - B3 SINE B2 -44 172 2 1 837 707 181 7 15 chr5 33126788 33126923 -119410336 - B1_Mur1 SINE Alu -2 147 14 1 837 330 215 0 0 chr5 33126915 33126980 -119410279 - B4 SINE B4 -61 231 167 1 837 363 192 110 0 chr5 33126977 33127050 -119410209 + B3 SINE B2 123 203 -13 1 837 1070 84 28 0 chr5 33127119 33127262 -119409997 + B1_Mus2 SINE Alu 1 147 0 1 837 180 0 0 0 chr5 33127262 33127282 -119409977 + (A)n Simple_repeat Simple_repeat 1 20 0 1 837 448 230 78 47 chr5 33127282 33127410 -119409849 + B3A SINE B2 48 179 -19 1 837 432 159 4 94 chr5 33127564 33127681 -119409578 + B1F1 SINE Alu 13 120 0 1 837 272 185 15 30 chr5 33128486 33128553 -119408706 - B3 SINE B2 -46 170 105 1 837 198 0 0 0 chr5 33128705 33128727 -119408532 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 837 1093 82 0 0 chr5 33129084 33129231 -119408028 + B1_Mus2 SINE Alu 1 147 0 1 837 288 0 0 0 chr5 33129231 33129263 -119407996 + (A)n Simple_repeat Simple_repeat 1 32 0 1 837 229 154 261 0 chr5 33129431 33129496 -119407763 + PB1D10 SINE Alu 23 104 -13 1 837 243 0 0 0 chr5 33129497 33129524 -119407735 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 837 961 160 42 11 chr5 33129634 33129823 -119407436 + B3 SINE B2 2 196 -20 1 837 589 243 74 0 chr5 33129822 33129970 -119407289 - B3A SINE B2 -38 160 2 1 837 333 199 28 35 chr5 33129971 33130057 -119407202 + L1M3 LINE L1 5050 5149 -997 1 837 446 233 281 24 chr5 33130152 33130319 -119406940 - B3 SINE B2 -6 210 1 1 837 265 204 0 0 chr5 33130424 33130473 -119406786 - B2_Mm2 SINE B2 -120 75 27 1 837 1004 31 0 0 chr5 33130501 33130629 -119406630 - B1_Mm SINE Alu 0 147 20 1 837 928 136 91 175 chr5 33130619 33130905 -119406354 + MTC LTR MaLR 152 413 -8 1 837 1279 27 0 0 chr5 33131041 33131188 -119406071 + B1_Mus2 SINE Alu 1 147 0 1 837 681 204 0 62 chr5 33131673 33131819 -119405440 + B1_Mur1 SINE Alu 6 142 -7 1 837 250 268 71 24 chr5 33136797 33136821 -119400438 - PB1D10 SINE Alu -24 93 6 1 837 254 250 33 0 chr5 33136821 33136881 -119400378 - ID_B1 SINE B4 -76 148 87 1 837 242 292 46 0 chr5 33137095 33137160 -119400099 + PB1 SINE Alu 1 68 -59 1 837 1326 87 27 0 chr5 33137346 33137531 -119399728 + B2_Mm1t SINE B2 2 191 -2 1 837 21 0 0 0 chr5 33137555 33137576 -119399683 + AT_rich Low_complexity Low_complexity 1 21 0 1 837 331 215 44 17 chr5 33138017 33138119 -119399140 + PB1D9 SINE Alu 13 117 -3 1 837 226 189 124 0 chr5 33138505 33138600 -119398659 - B1F SINE Alu 0 149 3 1 837 337 118 0 0 chr5 33138798 33138849 -119398410 - B1_Mur4 SINE Alu -7 143 93 1 837 318 210 49 0 chr5 33138934 33139015 -119398244 - L1M LINE L1 -2425 5360 5276 1 837 278 100 0 39 chr5 33139154 33139206 -119398053 + (TTTTC)n Simple_repeat Simple_repeat 1 50 0 1 837 955 62 0 8 chr5 33139207 33139338 -119397921 - B1_Mus1 SINE Alu 0 148 19 1 837 417 202 32 0 chr5 33139337 33139431 -119397828 - B3 SINE B2 -111 105 9 1 837 511 247 34 82 chr5 33139338 33139413 -119397846 - ID_B1 SINE B4 -1 222 27 1 837 354 269 67 0 chr5 33139440 33139544 -119397715 + B3 SINE B2 91 201 -15 1 837 1145 164 135 37 chr5 33139652 33140252 -119397007 + RMER19B LTR ERVK 165 877 -25 1 837 580 240 65 26 chr5 33140942 33141024 -119396235 + ID SINE ID 2 89 -135 1 837 269 255 184 0 chr5 33141024 33141122 -119396137 + PB1D10 SINE Alu 1 116 -1 1 837 625 183 29 58 chr5 33141395 33141413 -119395846 - B1_Mur1 SINE Alu -5 144 127 1 837 3132 14 3 0 chr5 33141413 33141758 -119395501 + ORR1A0 LTR MaLR 1 346 0 1 837 625 183 29 58 chr5 33141758 33141878 -119395381 - B1_Mur1 SINE Alu -23 126 10 1 837 1055 65 50 14 chr5 33141906 33142047 -119395212 - B1_Mus1 SINE Alu -2 146 1 1 837 1459 74 21 0 chr5 33142057 33142246 -119395013 - B2_Mm2 SINE B2 -2 193 1 1 837 21 36 0 0 chr5 33142247 33142275 -119394984 + AT_rich Low_complexity Low_complexity 1 28 0 1 837 186 43 0 0 chr5 33142363 33142386 -119394873 + (T)n Simple_repeat Simple_repeat 1 23 0 1 837 1153 48 7 7 chr5 33142386 33142533 -119394726 - B1_Mm SINE Alu 0 147 1 1 837 262 329 58 12 chr5 33142539 33142625 -119394634 - RSINE1 SINE B4 -70 95 6 1 837 1254 113 11 0 chr5 33142634 33142820 -119394439 - B2_Mm1t SINE B2 -5 188 1 1 837 519 17 0 0 chr5 33142861 33142921 -119394338 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 837 736 214 131 0 chr5 33142943 33143111 -119394148 - B3 SINE B2 -24 192 3 1 837 256 211 284 0 chr5 33143173 33143268 -119393991 - B3A SINE B2 -76 122 1 1 837 2022 136 61 3 chr5 33143464 33143840 -119393419 + RMER20A LTR ERVK 1 398 -118 1 837 877 154 15 0 chr5 33144090 33144220 -119393039 + B1_Mur1 SINE Alu 1 132 -17 1 837 463 190 10 39 chr5 33144627 33144731 -119392528 + RLTR19-int LTR ERVK 1090 1190 -4947 1 837 3634 206 87 62 chr5 33145441 33146327 -119390932 + RodERV21-int LTR ERV1 3664 4660 -331 1 837 396 0 0 0 chr5 33146327 33146371 -119390888 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 1 837 1393 58 29 0 chr5 33146371 33146544 -119390715 - B2_Mm2 SINE B2 -16 179 2 1 837 3634 204 70 77 chr5 33146544 33146602 -119390657 + RodERV21-int LTR ERV1 4661 4680 -311 1 837 1098 73 7 0 chr5 33146602 33146739 -119390520 - B1_Mus1 SINE Alu -10 138 1 1 837 3634 204 70 77 chr5 33146739 33146895 -119390364 + RodERV21-int LTR ERV1 4681 4823 -168 1 837 391 214 0 43 chr5 33146895 33146988 -119390271 + RMER4B LTR ERVK 346 434 -151 1 837 247 245 126 53 chr5 33147166 33147317 -119389942 + RMER21B LTR ERV1 318 479 -363 1 837 345 316 0 25 chr5 33147993 33148113 -119389146 - PB1D10 SINE Alu 0 117 1 1 837 1085 182 33 0 chr5 33148294 33148508 -119388751 + URR1A DNA MER1_type 1 221 -5 1 837 506 291 13 38 chr5 33148748 33148905 -119388354 - RSINE1 SINE B4 -4 161 9 1 837 1048 196 33 19 chr5 33148932 33149145 -119388114 - B3 SINE B2 0 216 1 1 837 211 349 118 8 chr5 33149153 33149280 -119387979 - B1F SINE Alu -7 142 2 2 837 1655 26 5 0 chr5 33149411 33149601 -119387658 + B2_Mm1a SINE B2 1 191 -2 2 837 203 179 0 0 chr5 33149606 33149645 -119387614 + A-rich Low_complexity Low_complexity 1 39 0 2 837 1146 75 46 0 chr5 33149705 33149878 -119387381 + B2_Mm2 SINE B2 14 194 -1 2 837 550 271 129 0 chr5 33150858 33151028 -119386231 + B3 SINE B2 19 210 -6 2 837 256 301 127 24 chr5 33151567 33151693 -119385566 - ID_B1 SINE B4 0 224 86 2 837 434 252 61 0 chr5 33151597 33151696 -119385563 - B1_Mur2 SINE Alu -43 106 2 2 837 396 285 8 8 chr5 33152018 33152142 -119385117 - PB1 SINE Alu -3 124 1 2 837 472 229 89 14 chr5 33152182 33152328 -119384931 - B3 SINE B2 -2 214 58 2 837 246 277 10 50 chr5 33152518 33152617 -119384642 + MTC LTR MaLR 20 114 -307 2 837 232 271 103 0 chr5 33152671 33152763 -119384496 - B1_Mur2 SINE Alu -19 130 2 2 837 180 158 0 0 chr5 33152816 33152854 -119384405 + T-rich Low_complexity Low_complexity 1 38 0 2 837 734 138 70 28 chr5 33152854 33152996 -119384263 - B1_Mur4 SINE Alu 0 150 3 2 837 1142 104 58 27 chr5 33153092 33153280 -119383979 - B2_Mm2 SINE B2 0 195 2 2 837 299 277 36 18 chr5 33153440 33153549 -119383710 - PB1D10 SINE Alu -8 109 1 2 837 322 269 54 0 chr5 33153567 33153660 -119383599 - ID_B1 SINE B4 -5 219 122 2 837 234 304 0 14 chr5 33153683 33153694 -119383565 - ID_B1 SINE B4 -77 147 137 2 837 894 85 138 0 chr5 33153694 33153824 -119383435 - B1_Mus1 SINE Alu 0 148 1 2 837 234 304 0 14 chr5 33153824 33153882 -119383377 - ID_B1 SINE B4 -88 136 79 2 837 1203 55 0 0 chr5 33154165 33154310 -119382949 - B1_Mm SINE Alu 0 147 3 2 837 630 218 48 34 chr5 33154468 33154615 -119382644 + B1_Mur3 SINE Alu 1 149 0 2 837 237 81 0 0 chr5 33154716 33154753 -119382506 - B3 SINE B2 -3 213 177 2 837 441 280 75 27 chr5 33154764 33154951 -119382308 + L1M2 LINE L1 4814 5009 -1134 2 837 1152 147 22 22 chr5 33155016 33155238 -119382021 + ORR1A3 LTR MaLR 105 326 0 2 837 400 294 0 0 chr5 33155899 33156001 -119381258 + RSINE1 SINE B4 29 130 -35 2 837 231 287 122 0 chr5 33156174 33156289 -119380970 + B1_Mur4 SINE Alu 22 150 0 2 837 472 287 112 0 chr5 33156297 33156440 -119380819 + B3A SINE B2 1 159 -39 2 837 264 222 14 0 chr5 33156517 33156589 -119380670 + L1M2c LINE L1 1886 1958 -4831 2 837 1005 118 14 0 chr5 33156630 33156774 -119380485 + B1_Mus2 SINE Alu 1 146 -1 2 837 1227 55 0 0 chr5 33156978 33157124 -119380135 - B1_Mus2 SINE Alu 0 147 2 2 837 239 229 7 81 chr5 33157154 33157256 -119380003 + L1M2c LINE L1 2190 2308 -4217 2 837 983 223 5 0 chr5 33157257 33157459 -119379800 + B3 SINE B2 3 205 -11 2 837 699 201 21 0 chr5 33157471 33157615 -119379644 - B1_Mus1 SINE Alu -1 147 1 2 837 498 140 15 3 chr5 33157670 33157764 -119379495 - B1_Mur3 SINE Alu -11 136 35 2 837 276 286 70 25 chr5 33157832 33157990 -119379269 + L1_Mur3 LINE L1 2252 2416 -3464 2 837 1452 63 11 0 chr5 33158317 33158507 -119378752 + B2_Mm1a SINE B2 1 192 -1 2 837 1402 78 16 5 chr5 33158520 33158712 -119378547 + B2_Mm2 SINE B2 1 194 -1 2 837 480 176 22 0 chr5 33159086 33159177 -119378082 + B1_Mur4 SINE Alu 1 93 -57 2 837 688 258 59 20 chr5 33159314 33159516 -119377743 + B3 SINE B2 1 210 -6 2 837 449 278 49 21 chr5 33159530 33159764 -119377495 + L1MA5 LINE L1 5594 5858 -310 2 837 814 150 50 7 chr5 33160123 33160264 -119376995 + B1_Mur4 SINE Alu 4 150 0 2 837 209 213 32 16 chr5 33160266 33160328 -119376931 + A-rich Low_complexity Low_complexity 2 64 0 2 837 362 212 15 0 chr5 33160636 33160702 -119376557 + PB1D10 SINE Alu 22 88 -29 2 837 278 214 57 0 chr5 33160849 33160919 -119376340 - ID_B1 SINE B4 -58 166 93 2 104 5089 101 46 79 chr5 33160945 33161882 -119375377 - RMER17A2 LTR ERVK 0 906 1 2 838 360 209 75 9 chr5 33161927 33162033 -119375226 + B3 SINE B2 98 210 -6 2 838 447 152 31 61 chr5 33163481 33163579 -119373680 - B1_Mur3 SINE Alu -1 148 54 2 838 1207 61 0 0 chr5 33163579 33163726 -119373533 + B1_Mus2 SINE Alu 1 147 0 2 838 474 49 0 0 chr5 33163869 33163930 -119373329 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 838 743 214 184 21 chr5 33163933 33164167 -119373092 - B4 SINE B4 -18 274 3 2 838 493 314 18 49 chr5 33165056 33165220 -119372039 + RSINE1 SINE B4 7 165 0 2 838 229 250 56 22 chr5 33165354 33165390 -119371869 + PB1D10 SINE Alu 25 117 0 2 838 243 204 37 0 chr5 33165390 33165444 -119371815 + ID_B1 SINE B4 169 224 0 2 838 538 270 37 68 chr5 33165475 33165638 -119371621 + RSINE1 SINE B4 8 165 0 2 838 1256 122 11 0 chr5 33165722 33165910 -119371349 + B2_Mm1t SINE B2 2 191 -2 2 838 913 193 71 20 chr5 33165973 33166169 -119371090 + B3 SINE B2 1 206 -10 2 838 800 255 45 0 chr5 33166179 33166379 -119370880 + B3 SINE B2 5 213 -3 2 838 920 47 0 30 chr5 33166708 33166839 -119370420 + B1_Mm SINE Alu 21 147 0 2 838 180 0 0 0 chr5 33166851 33166871 -119370388 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2 838 1414 82 5 20 chr5 33166984 33167182 -119370077 + B2_Mm2 SINE B2 1 195 0 2 838 180 0 0 0 chr5 33167341 33167361 -119369898 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2 838 860 115 50 7 chr5 33167363 33167503 -119369756 + B1_Mus1 SINE Alu 1 146 -2 2 838 831 129 0 0 chr5 33167506 33167638 -119369621 + (GGAGA)n Simple_repeat Simple_repeat 5 136 0 2 838 252 254 0 0 chr5 33167631 33167713 -119369546 + A-rich Low_complexity Low_complexity 1 82 0 2 838 1153 61 0 39 chr5 33167713 33167867 -119369392 + B1_Mus1 SINE Alu 1 148 0 2 838 252 254 0 0 chr5 33167867 33167894 -119369365 + A-rich Low_complexity Low_complexity 83 109 0 2 838 466 295 108 0 chr5 33168100 33168229 -119369030 - RSINE1 SINE B4 -17 148 6 2 838 691 182 20 34 chr5 33168318 33168466 -119368793 + B1_Mus2 SINE Alu 1 146 -1 2 838 1526 137 22 0 chr5 33168647 33168874 -119368385 + Lx5 LINE L1 6200 6431 -619 2 838 1013 41 20 33 chr5 33168889 33169039 -119368220 + B2_Mm2 SINE B2 47 194 -1 2 838 1283 88 14 90 chr5 33169039 33169071 -119368188 + Lx4B LINE L1 6441 6461 -597 2 838 1124 59 0 0 chr5 33169071 33169206 -119368053 + B1_Mus1 SINE Alu 1 135 -13 2 838 288 77 0 0 chr5 33169206 33169245 -119368014 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 2 838 1283 88 14 90 chr5 33169245 33169423 -119367836 + Lx4B LINE L1 6462 6635 -423 2 838 21 0 0 0 chr5 33174538 33174559 -119362700 + AT_rich Low_complexity Low_complexity 1 21 0 2 838 419 87 29 0 chr5 33174629 33174698 -119362561 + B1_Mm SINE Alu 77 147 0 2 838 1334 99 16 0 chr5 33174899 33175090 -119362169 - B2_Mm2 SINE B2 0 195 2 2 838 239 0 0 31 chr5 33175100 33175132 -119362127 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2 838 188 283 138 28 chr5 33175545 33175654 -119361605 + MIR SINE MIR 105 225 -37 2 838 250 238 0 16 chr5 33175860 33175924 -119361335 - ID4_ SINE ID -19 64 2 2 838 314 316 31 126 chr5 33176120 33176176 -119361083 + ID_B1 SINE B4 81 135 -89 2 838 1560 32 27 0 chr5 33176176 33176363 -119360896 + B2_Mm1a SINE B2 1 192 -1 2 838 314 316 31 126 chr5 33176363 33176465 -119360794 + ID_B1 SINE B4 136 224 0 2 838 594 225 48 21 chr5 33176480 33176625 -119360634 + B1_Mur3 SINE Alu 1 149 0 2 838 254 170 0 0 chr5 33176850 33176897 -119360362 + B1_Mur2 SINE Alu 87 133 -16 2 838 489 88 25 62 chr5 33176949 33177057 -119360202 + B1_Mus2 SINE Alu 42 149 0 2 838 833 155 0 14 chr5 33177095 33177239 -119360020 + B1_Mur3 SINE Alu 6 147 -2 2 838 432 176 196 0 chr5 33177237 33177339 -119359920 + RMER5 LTR ERV1 21 142 -392 2 838 769 178 0 0 chr5 33177647 33177782 -119359477 + B1_Mus2 SINE Alu 11 145 -2 2 838 638 278 35 5 chr5 33177887 33178086 -119359173 + B3 SINE B2 1 205 -11 2 838 544 157 48 10 chr5 33178137 33178240 -119359019 + PB1D9 SINE Alu 14 120 0 2 838 234 226 0 0 chr5 33178547 33178600 -119358659 - B1F1 SINE Alu -90 59 7 2 838 397 221 132 9 chr5 33178904 33179018 -119358241 + B1_Mur1 SINE Alu 22 149 0 2 838 21 0 0 0 chr5 33179131 33179152 -119358107 + AT_rich Low_complexity Low_complexity 1 21 0 2 838 368 132 29 0 chr5 33179159 33179227 -119358032 + (CATA)n Simple_repeat Simple_repeat 3 72 0 2 838 453 243 125 177 chr5 33179357 33179465 -119357794 - B4 SINE B4 0 292 228 2 838 419 292 12 58 chr5 33179465 33179636 -119357623 - RSINE1 SINE B4 0 165 3 2 838 453 243 125 177 chr5 33179636 33179832 -119357427 - B4 SINE B4 -65 227 4 2 838 471 222 209 6 chr5 33179898 33180070 -119357189 + B3 SINE B2 1 207 -9 2 838 316 278 100 0 chr5 33180090 33180180 -119357079 - B3A SINE B2 -94 104 6 2 838 1254 21 0 0 chr5 33180494 33180635 -119356624 + B1_Mm SINE Alu 1 141 -6 2 838 21 0 0 0 chr5 33181099 33181120 -119356139 + AT_rich Low_complexity Low_complexity 1 21 0 2 838 424 190 92 6 chr5 33181429 33181540 -119355719 + B1_Mur4 SINE Alu 2 110 -40 2 838 1470 153 140 11 chr5 33181547 33181679 -119355580 + RMER10A LTR ERVL 8 155 -287 2 838 189 0 0 0 chr5 33181679 33181700 -119355559 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 2 838 1470 153 140 11 chr5 33181700 33181931 -119355328 + RMER10A LTR ERVL 156 417 -25 2 838 817 194 11 11 chr5 33181925 33182102 -119355157 + B3 SINE B2 40 216 0 3 838 388 198 74 67 chr5 33182159 33182441 -119354818 + Lx9 LINE L1 7309 7642 -2 3 838 1145 106 15 87 chr5 33182462 33182668 -119354591 + B2_Mm2 SINE B2 3 193 -2 3 838 856 116 21 7 chr5 33182759 33182922 -119354337 + B2_Mm2 SINE B2 2 173 -43 3 838 228 35 0 0 chr5 33182922 33182951 -119354308 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 838 1212 109 60 0 chr5 33183025 33183054 -119354205 - B2_Mm2 SINE B2 0 195 167 3 838 285 29 0 0 chr5 33183054 33183088 -119354171 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 3 838 1212 109 60 0 chr5 33183088 33183242 -119354017 - B2_Mm2 SINE B2 -29 166 2 3 838 330 268 56 35 chr5 33183265 33183408 -119353851 - ID_B1 SINE B4 -1 223 78 3 838 865 171 0 20 chr5 33183575 33183724 -119353535 + B1_Mus1 SINE Alu 1 146 -2 3 838 276 231 172 86 chr5 33183748 33183876 -119353383 + B4A SINE B4 82 220 -72 3 838 547 134 16 89 chr5 33183763 33183886 -119353373 + PB1D9 SINE Alu 7 120 0 3 838 28 29 0 0 chr5 33183926 33183961 -119353298 + AT_rich Low_complexity Low_complexity 1 35 0 3 838 408 306 91 0 chr5 33183997 33184118 -119353141 - B1F1 SINE Alu -16 133 2 3 838 313 192 12 37 chr5 33184697 33184778 -119352481 + ID_B1 SINE B4 144 222 -2 3 838 1486 182 97 34 chr5 33184852 33185204 -119352055 + ORR1D1 LTR MaLR 1 374 0 3 838 784 191 28 0 chr5 33185391 33185532 -119351727 + B1_Mur1 SINE Alu 5 149 0 3 838 356 274 58 19 chr5 33185535 33185639 -119351620 - B3 SINE B2 -34 182 75 3 838 473 235 17 42 chr5 33185645 33185765 -119351494 + PB1D10 SINE Alu 1 117 0 3 838 323 211 38 50 chr5 33185855 33185935 -119351324 + ID4 SINE ID 5 83 0 3 838 1241 27 0 13 chr5 33186036 33186185 -119351074 - B1_Mus1 SINE Alu 0 148 2 3 838 599 234 104 20 chr5 33186219 33186420 -119350839 - B4A SINE B4 -1 291 74 3 838 807 151 20 20 chr5 33187305 33187454 -119349805 + B1_Mur3 SINE Alu 1 149 0 3 838 594 318 23 14 chr5 33187618 33187832 -119349427 + ID_B1 SINE B4 4 219 -5 3 838 449 264 0 79 chr5 33187841 33187981 -119349278 + B3A SINE B2 1 129 -69 3 838 673 243 0 0 chr5 33188044 33188184 -119349075 + B1_Mus2 SINE Alu 2 141 -6 3 838 275 213 40 0 chr5 33188195 33188270 -119348989 + CT-rich Low_complexity Low_complexity 2 79 0 3 838 290 206 0 0 chr5 33188501 33188564 -119348695 + ID4_ SINE ID 8 70 -13 3 838 843 132 14 7 chr5 33188643 33188788 -119348471 - B1_Mus2 SINE Alu -1 146 1 3 838 989 99 184 0 chr5 33188976 33189128 -119348131 + B2_Mm2 SINE B2 3 182 -13 3 838 218 114 91 0 chr5 33189128 33189172 -119348087 + B2_Mm2 SINE B2 54 101 -94 3 838 781 162 7 7 chr5 33189246 33189389 -119347870 + B1_Mus1 SINE Alu 6 148 0 3 838 918 223 20 5 chr5 33189425 33189628 -119347631 + B3 SINE B2 1 206 -10 3 838 556 261 14 27 chr5 33189684 33189830 -119347429 + B1_Mur1 SINE Alu 6 149 0 3 838 577 242 83 18 chr5 33189843 33190011 -119347248 + B3A SINE B2 2 180 -18 3 838 1298 87 40 0 chr5 33190060 33190233 -119347026 + B2_Mm2 SINE B2 1 180 -15 3 838 445 45 321 9 chr5 33190261 33190373 -119346886 + B2_Mm2 SINE B2 47 193 -2 3 838 368 257 4 12 chr5 33190400 33190496 -119346763 + PB1D10 SINE Alu 16 110 -7 3 838 260 186 17 0 chr5 33190509 33190568 -119346691 + GA-rich Low_complexity Low_complexity 2 61 0 3 838 327 226 0 79 chr5 33190623 33190724 -119346535 + B3A SINE B2 1 93 -105 3 838 967 40 0 25 chr5 33190780 33190929 -119346330 + B1_Mm SINE Alu 6 147 -1 3 838 432 220 53 0 chr5 33191684 33191816 -119345443 + B3A SINE B2 42 180 -18 3 838 307 261 11 21 chr5 33191815 33191909 -119345350 + ID_B1 SINE B4 124 216 -8 3 838 202 146 42 0 chr5 33192067 33192096 -119345163 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 3 838 1117 113 84 11 chr5 33192096 33192256 -119345003 + B2_Mm1t SINE B2 2 160 -33 3 838 186 43 0 0 chr5 33192256 33192279 -119344980 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 838 1117 113 84 11 chr5 33192279 33192297 -119344962 + B2_Mm1t SINE B2 161 191 -2 3 838 202 146 42 0 chr5 33192297 33192315 -119344944 + (CAAA)n Simple_repeat Simple_repeat 3 21 0 3 838 243 173 0 0 chr5 33192477 33192529 -119344730 + T-rich Low_complexity Low_complexity 2 53 0 3 838 1251 40 0 0 chr5 33192531 33192679 -119344580 - B1_Mus1 SINE Alu 0 148 1 3 838 1057 104 0 0 chr5 33192734 33192878 -119344381 + B1_Mus1 SINE Alu 5 148 0 3 838 222 128 0 0 chr5 33192878 33192917 -119344342 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 3 838 1055 153 126 5 chr5 33193068 33193259 -119344000 + B3 SINE B2 3 216 0 3 838 784 163 20 33 chr5 33193259 33193410 -119343849 + B1_Mur4 SINE Alu 1 150 0 3 838 225 229 127 14 chr5 33193604 33193675 -119343584 + B1F1 SINE Alu 70 148 -1 3 838 195 42 0 0 chr5 33193683 33193707 -119343552 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 838 549 217 56 42 chr5 33194693 33194837 -119342422 + B1F1 SINE Alu 3 148 -1 3 838 264 91 0 0 chr5 33195190 33195234 -119342025 + (T)n Simple_repeat Simple_repeat 1 44 0 3 838 401 184 138 0 chr5 33195340 33195427 -119341832 + ID_B1 SINE B4 123 221 -3 3 838 431 218 6 120 chr5 33195427 33195490 -119341769 + ID_B1 SINE B4 77 224 0 3 838 746 39 19 0 chr5 33195490 33195594 -119341665 + B1_Mm SINE Alu 42 147 0 3 838 577 110 0 0 chr5 33197439 33197521 -119339738 + B1_Mus1 SINE Alu 18 99 -49 3 838 457 294 29 0 chr5 33197628 33197764 -119339495 - B1F2 SINE Alu -9 140 1 3 838 315 0 0 0 chr5 33197834 33197869 -119339390 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 838 303 200 0 15 chr5 33197880 33197946 -119339313 - B1F SINE Alu -10 139 75 3 838 228 67 0 0 chr5 33197949 33197979 -119339280 + (T)n Simple_repeat Simple_repeat 1 30 0 3 838 731 159 24 0 chr5 33198025 33198151 -119339108 - B1_Mur3 SINE Alu -7 142 14 3 838 1594 52 0 0 chr5 33198154 33198346 -119338913 + B2_Mm1t SINE B2 2 193 0 3 838 24 53 0 0 chr5 33198555 33198593 -119338666 + AT_rich Low_complexity Low_complexity 1 38 0 3 838 1057 83 7 14 chr5 33198660 33198807 -119338452 + B1_Mm SINE Alu 2 147 0 3 838 280 87 0 21 chr5 33198894 33198933 -119338326 + B2_Mm2 SINE B2 2 40 -155 3 838 929 131 15 0 chr5 33198933 33199070 -119338189 + B1_Mus2 SINE Alu 1 139 -8 3 838 1088 102 6 0 chr5 33199096 33199262 -119337997 + B2_Mm1t SINE B2 27 193 0 3 838 227 250 15 30 chr5 33199361 33199427 -119337832 + ID SINE ID 8 72 -152 3 838 431 247 10 30 chr5 33199471 33199571 -119337688 + PB1D7 SINE Alu 3 100 -20 3 838 1146 37 7 0 chr5 33199870 33200006 -119337253 - B1_Mm SINE Alu -10 137 1 3 838 339 25 0 0 chr5 33200338 33200378 -119336881 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 838 234 196 71 0 chr5 33200398 33200454 -119336805 - RLTR42 LTR ERVK -28 211 152 3 838 326 65 0 0 chr5 33200682 33200728 -119336531 - RLTR42 LTR ERVK -193 46 1 3 838 550 77 10 71 chr5 33200760 33200858 -119336401 - RLTR42-int LTR ERVK -47 5475 5384 3 838 277 117 0 83 chr5 33200858 33200924 -119336335 + T-rich Low_complexity Low_complexity 16 77 0 3 838 1092 76 14 0 chr5 33200924 33201068 -119336191 - B1_Mus2 SINE Alu 0 147 2 3 838 277 117 0 83 chr5 33201068 33201085 -119336174 + T-rich Low_complexity Low_complexity 1 15 0 3 838 260 139 0 0 chr5 33201085 33201121 -119336138 - RLTR42-int LTR ERVK -124 5398 5363 3 838 779 183 32 32 chr5 33201127 33201285 -119335974 - RLTR42-int LTR ERVK -70 5452 5295 3 838 497 56 0 0 chr5 33201285 33201356 -119335903 + B1_Mm SINE Alu 77 147 0 3 838 2772 173 92 133 chr5 33201359 33201624 -119335635 - RLTR42-int LTR ERVK -210 5312 5043 3 838 219 147 0 0 chr5 33201624 33201658 -119335601 + B1_Mus1 SINE Alu 1 34 -114 3 838 2772 173 92 133 chr5 33201658 33201992 -119335267 - RLTR42-int LTR ERVK -210 5042 4700 3 838 1139 55 7 7 chr5 33201992 33202138 -119335121 + B1_Mm SINE Alu 2 147 0 3 838 2772 173 92 133 chr5 33202138 33202166 -119335093 - RLTR42-int LTR ERVK -823 4699 4699 3 838 1368 95 21 0 chr5 33202166 33202355 -119334904 + B2_Mm2 SINE B2 1 193 -2 3 838 2772 173 92 133 chr5 33202355 33202519 -119334740 - RLTR42-int LTR ERVK -823 4699 4520 3 838 766 134 22 7 chr5 33202531 33202666 -119334593 - B1_Mur3 SINE Alu 0 149 13 3 838 1489 177 57 11 chr5 33202666 33202946 -119334313 - RLTR42-int LTR ERVK -1009 4513 4221 3 838 1166 264 42 12 chr5 33202950 33203280 -119333979 + Lx6 LINE L1 7119 7458 -2 3 838 1607 108 30 79 chr5 33203289 33203592 -119333667 - RLTR42-int LTR ERVK -1309 4213 3926 3 838 636 160 8 40 chr5 33203596 33203720 -119333539 - B1_Mur4 SINE Alu -22 128 9 3 838 1207 110 38 11 chr5 33203741 33203925 -119333334 - B2_Mm2 SINE B2 -6 189 1 3 838 4443 184 139 157 chr5 33203932 33204242 -119333017 - RLTR42-int LTR ERVK -1572 3950 3608 3 838 225 196 0 0 chr5 33204242 33204288 -119332971 + B1_Mus1 SINE Alu 4 49 -99 3 838 221 132 0 0 chr5 33204283 33204321 -119332938 - B2_Mm2 SINE B2 -157 38 1 3 838 4443 184 139 157 chr5 33204321 33205389 -119331870 - RLTR42-int LTR ERVK -1915 3607 2426 3 838 1040 64 0 0 chr5 33205389 33205530 -119331729 - B1_Mus2 SINE Alu 0 147 7 3 838 4443 184 139 157 chr5 33205530 33205851 -119331408 - RLTR42-int LTR ERVK -1572 2425 2067 3 838 21 0 0 0 chr5 33206230 33206251 -119331008 + GC_rich Low_complexity Low_complexity 1 21 0 3 838 374 261 33 0 chr5 33207539 33207640 -119329619 - B1F SINE Alu -8 141 38 3 838 216 0 0 0 chr5 33207778 33207802 -119329457 + (T)n Simple_repeat Simple_repeat 1 24 0 3 838 567 286 37 20 chr5 33207854 33208070 -119329189 - ID_B1 SINE B4 -69 223 2 3 838 327 245 73 106 chr5 33208100 33208223 -119329036 - B1F2 SINE Alu -6 143 25 3 838 277 279 34 23 chr5 33208272 33208360 -119328899 - B4A SINE B4 -60 232 144 3 838 340 255 30 28 chr5 33208710 33208834 -119328425 + B1F SINE Alu 1 117 -3 3 838 637 204 79 14 chr5 33208836 33208975 -119328284 + B1_Mur2 SINE Alu 1 148 -1 3 838 252 86 0 0 chr5 33209217 33209252 -119328007 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 3 838 289 183 150 0 chr5 33209841 33209901 -119327358 - ID4_ SINE ID -12 71 3 4 838 648 229 8 0 chr5 33210045 33210167 -119327092 + RSINE1 SINE B4 2 124 -41 4 838 261 0 0 0 chr5 33210167 33210196 -119327063 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 838 195 42 0 0 chr5 33210197 33210221 -119327038 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 838 299 262 0 35 chr5 33210269 33210356 -119326903 + ID_B1 SINE B4 78 161 -63 4 838 1071 214 0 23 chr5 33210832 33211052 -119326207 + B3 SINE B2 2 216 0 4 838 623 251 98 0 chr5 33211076 33211239 -119326020 - B3A SINE B2 -18 180 2 4 838 24 0 0 0 chr5 33211878 33211902 -119325357 + AT_rich Low_complexity Low_complexity 1 24 0 4 838 1178 68 0 0 chr5 33212080 33212227 -119325032 - B1_Mus1 SINE Alu 0 148 2 4 838 497 214 35 18 chr5 33212688 33212802 -119324457 + B1_Mur1 SINE Alu 7 122 -27 4 838 195 157 0 0 chr5 33212854 33212905 -119324354 + T-rich Low_complexity Low_complexity 1 51 0 4 838 1126 87 7 0 chr5 33212912 33213061 -119324198 - B1_Mur4 SINE Alu 0 150 1 4 838 1423 209 117 51 chr5 33213491 33213944 -119323315 - Lx9 LINE L1 -157 7487 7005 4 838 212 0 0 0 chr5 33213947 33213974 -119323285 + PB1D9 SINE Alu 89 115 -5 4 838 594 250 13 38 chr5 33213994 33214152 -119323107 - RSINE1 SINE B4 -4 161 8 4 838 1072 77 28 0 chr5 33214192 33214335 -119322924 - B1_Mus1 SINE Alu -1 147 1 4 838 571 279 195 7 chr5 33214610 33214892 -119322367 - Lx8 LINE L1 -358 7115 6781 4 838 398 252 102 31 chr5 33214894 33215021 -119322238 + B1_Mur2 SINE Alu 12 147 -2 4 838 231 196 34 51 chr5 33215086 33215145 -119322114 + 5S rRNA rRNA 34 91 -30 4 838 761 292 240 25 chr5 33215150 33215592 -119321667 - Lx8 LINE L1 -679 6794 6258 4 838 470 70 14 0 chr5 33215679 33215750 -119321509 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 4 838 648 213 49 7 chr5 33215794 33215936 -119321323 - B1_Mur2 SINE Alu -1 148 1 4 838 435 218 89 0 chr5 33216012 33216113 -119321146 - ID_B1 SINE B4 -15 209 100 4 838 180 0 0 0 chr5 33216117 33216137 -119321122 + (T)n Simple_repeat Simple_repeat 1 20 0 4 838 200 130 22 0 chr5 33216228 33216274 -119320985 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 838 243 0 0 0 chr5 33216443 33216470 -119320789 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 838 414 0 0 0 chr5 33216595 33216641 -119320618 + (TTA)n Simple_repeat Simple_repeat 2 47 0 4 838 1153 62 7 0 chr5 33216645 33216789 -119320470 - B1_Mus2 SINE Alu -1 146 2 4 838 734 192 13 40 chr5 33216797 33216949 -119320310 - B1_Mur2 SINE Alu 0 149 2 4 838 527 339 27 0 chr5 33216950 33217133 -119320126 - B4A SINE B4 -78 214 27 4 838 726 183 179 22 chr5 33217301 33217480 -119319779 - B3 SINE B2 -6 210 4 4 838 367 218 74 1 chr5 33217488 33217582 -119319677 - PB1D10 SINE Alu -6 114 13 4 838 1078 75 7 33 chr5 33217703 33217854 -119319405 - B1_Mus1 SINE Alu 0 148 2 4 838 33 43 0 0 chr5 33218246 33218293 -119318966 + AT_rich Low_complexity Low_complexity 1 47 0 4 838 664 188 150 36 chr5 33218305 33218498 -119318761 - B3 SINE B2 -1 215 1 4 838 404 287 28 0 chr5 33218526 33218634 -119318625 - B1F SINE Alu -2 147 37 4 838 816 44 9 0 chr5 33218731 33218844 -119318415 - B1_Mm SINE Alu 0 147 34 4 838 234 0 0 0 chr5 33218844 33218870 -119318389 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 838 1130 22 15 0 chr5 33218871 33219005 -119318254 - B1_Mm SINE Alu -11 136 1 4 838 1382 23 105 0 chr5 33219068 33219239 -119318020 - B2_Mm1t SINE B2 -4 189 1 4 838 1254 48 0 0 chr5 33219834 33219981 -119317278 - B1_Mus1 SINE Alu 0 148 2 4 838 668 272 40 15 chr5 33220133 33220331 -119316928 - B3 SINE B2 -6 210 8 4 838 505 184 211 0 chr5 33220370 33220484 -119316775 - B1_Mur1 SINE Alu -7 142 5 4 838 423 219 0 0 chr5 33220650 33220723 -119316536 + ID4 SINE ID 2 74 -9 4 838 356 216 124 0 chr5 33221072 33221169 -119316090 - PB1D9 SINE Alu -7 113 5 4 838 402 248 134 27 chr5 33221594 33221706 -119315553 - B1_Mm SINE Alu -23 124 1 4 838 230 277 0 15 chr5 33221746 33221812 -119315447 - B4A SINE B4 -162 130 66 4 838 340 203 0 55 chr5 33222033 33222106 -119315153 - ID4_ SINE ID -13 70 2 4 838 630 91 0 0 chr5 33222200 33222299 -119314960 + (TG)n Simple_repeat Simple_repeat 2 100 0 4 838 189 0 0 0 chr5 33222299 33222319 -119314940 + (TA)n Simple_repeat Simple_repeat 2 22 0 4 838 242 233 0 64 chr5 33222321 33222399 -119314860 - B1F SINE Alu -1 148 76 4 838 979 194 42 10 chr5 33222519 33222712 -119314547 - B3 SINE B2 -17 199 1 4 838 429 219 21 1 chr5 33222850 33222954 -119314305 + L1_Mur3 LINE L1 5303 5441 -918 4 838 1398 86 11 0 chr5 33223474 33223660 -119313599 - B2_Mm1t SINE B2 -3 190 3 4 838 580 246 30 0 chr5 33223782 33223916 -119313343 + L1M2 LINE L1 5450 5587 -710 4 838 576 104 0 50 chr5 33223920 33224021 -119313238 - RMER6D LTR ERVK -624 96 1 4 838 400 134 146 0 chr5 33224021 33224103 -119313156 - RMER6-int LTR ERVK 0 3177 3084 4 838 11436 123 94 67 chr5 33224103 33224531 -119312728 - RMER6-int LTR ERVK -209 2968 2515 4 838 333 214 43 0 chr5 33224531 33224601 -119312658 - LSU-rRNA_Hsa rRNA rRNA -3186 1849 1777 4 838 11436 123 94 67 chr5 33224601 33226233 -119311026 - RMER6-int LTR ERVK -209 2514 780 4 838 864 123 19 25 chr5 33226255 33226413 -119310846 - RMER6-int LTR ERVK -2516 661 505 4 838 360 64 0 0 chr5 33226414 33226461 -119310798 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 4 838 1194 120 49 0 chr5 33226461 33226645 -119310614 - B2_Mm1t SINE B2 0 193 1 4 838 1154 98 332 24 chr5 33226698 33226948 -119310311 - RMER6-int LTR ERVK -2831 346 20 4 838 1426 152 0 17 chr5 33226967 33227208 -119310051 - RMER6D LTR ERVK -4 716 480 4 838 415 243 37 9 chr5 33227372 33227480 -119309779 + RSINE1 SINE B4 4 114 -51 4 838 725 174 0 22 chr5 33227756 33227891 -119309368 - B1_Mur2 SINE Alu 0 149 18 4 838 222 348 0 14 chr5 33227905 33227975 -119309284 - ID_B1 SINE B4 -100 124 56 4 838 367 230 98 53 chr5 33228160 33228293 -119308966 + B1F1 SINE Alu 11 149 0 4 838 330 278 42 58 chr5 33228431 33228598 -119308661 - RSINE1 SINE B4 -129 163 1 4 838 757 131 19 13 chr5 33228637 33228776 -119308483 + CT-rich Low_complexity Low_complexity 19 159 0 4 838 1389 90 37 0 chr5 33228776 33228964 -119308295 - B2_Mm2 SINE B2 0 195 1 4 838 757 131 19 13 chr5 33228964 33228979 -119308280 + polypyrimidine Low_complexity Low_complexity 4 18 0 4 838 650 167 50 21 chr5 33228983 33229124 -119308135 - B1_Mur2 SINE Alu 0 149 5 4 838 525 276 49 0 chr5 33229915 33230038 -119307221 + B1F SINE Alu 1 129 -20 4 838 541 184 74 87 chr5 33230171 33230320 -119306939 + B1_Mus2 SINE Alu 1 147 0 4 838 200 122 0 24 chr5 33230320 33230362 -119306897 + (GAAA)n Simple_repeat Simple_repeat 1 41 0 4 838 243 348 44 18 chr5 33230399 33230513 -119306746 - PB1D10 SINE Alu 0 117 1 4 838 328 235 15 0 chr5 33230556 33230624 -119306635 + ID4_ SINE ID 2 70 -13 4 838 242 335 28 47 chr5 33230674 33230847 -119306412 + RSINE1 SINE B4 4 172 -120 4 838 767 194 14 0 chr5 33231211 33231350 -119305909 - B1_Mur2 SINE Alu -8 141 1 4 838 320 211 113 0 chr5 33231466 33231537 -119305722 - ID4_ SINE ID -4 79 1 4 838 216 135 0 0 chr5 33231604 33231641 -119305618 + (GGA)n Simple_repeat Simple_repeat 1 37 0 4 838 584 160 20 0 chr5 33231655 33231755 -119305504 + B1_Mur4 SINE Alu 6 107 -43 4 838 324 345 18 0 chr5 33231818 33231928 -119305331 + PB1D10 SINE Alu 1 112 -5 4 838 379 265 40 64 chr5 33231935 33232036 -119305223 + ID_B1 SINE B4 11 112 -112 4 838 4587 65 7 15 chr5 33232036 33232628 -119304631 - LTRIS_Mus LTR ERV1 0 587 1 4 838 379 265 40 64 chr5 33232628 33232651 -119304608 + ID_B1 SINE B4 113 132 -92 4 838 241 148 0 115 chr5 33232646 33232707 -119304552 + B1F SINE Alu 95 148 -1 4 838 369 288 95 70 chr5 33232709 33232993 -119304266 + B4A SINE B4 2 292 0 4 838 382 211 143 12 chr5 33233138 33233248 -119304011 + B1_Mus1 SINE Alu 1 111 -6 4 838 1266 119 5 0 chr5 33233311 33233496 -119303763 - B2_Mm1a SINE B2 -6 187 2 4 838 1139 54 0 57 chr5 33233892 33233908 -119303351 - B1_Mus1 SINE Alu 0 148 140 4 838 219 69 0 0 chr5 33233908 33233937 -119303322 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 4 838 1139 54 0 57 chr5 33233937 33234077 -119303182 - B1_Mus1 SINE Alu -9 139 1 4 838 930 193 13 76 chr5 33234083 33234307 -119302952 - B3 SINE B2 -6 210 1 4 838 716 277 41 0 chr5 33234310 33234505 -119302754 - ID_B1 SINE B4 -6 218 16 4 838 351 291 44 26 chr5 33234646 33234759 -119302500 - PB1D7 SINE Alu 0 120 6 4 838 23 33 0 0 chr5 33234778 33234808 -119302451 + AT_rich Low_complexity Low_complexity 1 30 0 4 838 207 0 0 0 chr5 33234921 33234944 -119302315 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 838 2609 228 82 25 chr5 33234962 33235611 -119301648 - Lx7 LINE L1 -367 7329 6644 4 838 228 35 0 0 chr5 33235612 33235641 -119301618 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 838 536 253 85 20 chr5 33235684 33235810 -119301449 + RSINE1 SINE B4 3 139 -26 4 838 315 0 0 0 chr5 33235810 33235845 -119301414 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 838 536 253 85 20 chr5 33235845 33235871 -119301388 + RSINE1 SINE B4 140 165 0 4 838 309 269 96 0 chr5 33236240 33236344 -119300915 - PB1D10 SINE Alu -1 116 3 4 838 526 275 49 0 chr5 33236344 33236405 -119300854 - ID SINE ID -135 89 22 4 838 688 188 39 8 chr5 33236416 33236545 -119300714 + B1_Mur2 SINE Alu 2 134 -15 4 838 223 283 100 0 chr5 33236546 33236606 -119300653 - ID_B1 SINE B4 -76 148 83 4 838 254 262 15 15 chr5 33236689 33236755 -119300504 - RSINE1 SINE B4 -98 67 2 4 838 256 304 109 0 chr5 33236893 33236985 -119300274 - PB1D10 SINE Alu -15 102 1 5 838 669 113 18 62 chr5 33237049 33237162 -119300097 + PB1D9 SINE Alu 1 108 -12 5 838 195 42 0 0 chr5 33237164 33237188 -119300071 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 838 1281 91 6 6 chr5 33237188 33237365 -119299894 - B2_Mm2 SINE B2 -18 177 1 5 838 1598 38 0 0 chr5 33237540 33237725 -119299534 - B2_Mm1a SINE B2 -8 185 1 5 838 186 43 0 0 chr5 33237816 33237839 -119299420 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 838 267 31 0 0 chr5 33237844 33237876 -119299383 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 838 419 274 47 9 chr5 33237876 33237983 -119299276 - RSINE1 SINE B4 -51 114 4 5 838 425 169 233 17 chr5 33238330 33238450 -119298809 - B1_Mur2 SINE Alu -1 148 3 5 838 23 0 0 0 chr5 33238658 33238681 -119298578 + AT_rich Low_complexity Low_complexity 1 23 0 5 838 459 207 48 32 chr5 33238682 33238807 -119298452 - ID_B1 SINE B4 0 224 98 5 838 374 264 9 9 chr5 33238908 33239015 -119298244 - B4 SINE B4 -100 192 86 5 838 218 344 0 0 chr5 33239097 33239161 -119298098 + B3 SINE B2 67 130 -86 5 838 180 77 0 0 chr5 33239320 33239346 -119297913 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 5 838 245 239 148 0 chr5 33239351 33239439 -119297820 - L1M4 LINE L1 -1102 5044 4944 5 838 1422 92 0 5 chr5 33239460 33239656 -119297603 - B2_Mm2 SINE B2 0 195 1 5 838 668 203 14 20 chr5 33239659 33239805 -119297454 - B1_Mur3 SINE Alu 0 149 5 5 838 366 248 33 41 chr5 33239813 33239935 -119297324 - L1M4 LINE L1 -1195 4951 4831 5 838 194 302 36 45 chr5 33240305 33240416 -119296843 - MIRb SINE MIR -154 114 5 5 838 27 0 0 0 chr5 33240618 33240645 -119296614 + AT_rich Low_complexity Low_complexity 1 27 0 5 838 1435 34 50 11 chr5 33240650 33240830 -119296429 - B2_Mm2 SINE B2 -7 188 2 5 838 458 221 112 22 chr5 33240923 33241057 -119296202 - B1_Mur2 SINE Alu 0 149 4 5 838 980 168 0 0 chr5 33241388 33241537 -119295722 - B1_Mur2 SINE Alu 0 149 1 5 838 456 304 22 0 chr5 33241871 33242009 -119295250 - B1F SINE Alu 0 149 9 5 838 26 0 0 0 chr5 33242018 33242044 -119295215 + AT_rich Low_complexity Low_complexity 1 26 0 5 838 228 125 0 0 chr5 33242298 33242310 -119294949 + (T)n Simple_repeat Simple_repeat 1 12 0 5 838 1173 68 0 0 chr5 33242310 33242457 -119294802 - B1_Mus2 SINE Alu 0 147 1 5 838 228 125 0 0 chr5 33242457 33242492 -119294767 + (T)n Simple_repeat Simple_repeat 1 35 0 5 838 876 273 53 11 chr5 33242573 33242836 -119294423 - B4A SINE B4 -2 290 17 5 838 330 0 60 0 chr5 33242883 33242933 -119294326 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 838 284 286 0 28 chr5 33242940 33243012 -119294247 - B4A SINE B4 -6 286 217 5 838 490 258 70 8 chr5 33243025 33243154 -119294105 - B1_Mur4 SINE Alu 0 150 14 5 838 295 326 41 75 chr5 33243031 33243177 -119294082 - ID_B1 SINE B4 -6 218 78 5 838 902 172 201 0 chr5 33243210 33243384 -119293875 - B3 SINE B2 -6 210 2 5 838 460 286 57 0 chr5 33243401 33243541 -119293718 - RSINE1 SINE B4 -3 162 15 5 838 210 154 0 0 chr5 33243542 33243581 -119293678 + T-rich Low_complexity Low_complexity 1 39 0 5 838 1166 62 7 0 chr5 33243585 33243731 -119293528 - B1_Mus2 SINE Alu 0 147 1 5 838 534 194 194 0 chr5 33243733 33243857 -119293402 - B1_Mur1 SINE Alu -1 148 1 5 838 307 302 47 0 chr5 33243866 33243972 -119293287 - B1F1 SINE Alu -21 128 18 5 838 603 181 85 23 chr5 33244277 33244407 -119292852 - B1_Mus1 SINE Alu -9 139 2 5 838 228 270 13 26 chr5 33245049 33245125 -119292134 + RSINE1 SINE B4 91 165 0 5 838 240 59 0 0 chr5 33245285 33245319 -119291940 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 838 804 52 267 0 chr5 33245778 33245894 -119291365 - B1_Mus2 SINE Alu 0 147 1 5 838 318 315 0 0 chr5 33245999 33246072 -119291187 + RSINE1 SINE B4 2 74 -91 5 838 324 179 155 0 chr5 33247255 33247339 -119289920 - PB1D7 SINE Alu 0 120 24 5 838 188 67 33 0 chr5 33247354 33247384 -119289875 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 5 838 522 246 62 0 chr5 33247412 33247542 -119289717 - B3A SINE B2 0 198 61 5 838 674 119 0 106 chr5 33247875 33248016 -119289243 - B2_Mm2 SINE B2 -68 127 2 5 838 471 248 26 26 chr5 33248312 33248428 -119288831 - RSINE1 SINE B4 -14 151 36 5 838 222 37 0 0 chr5 33248697 33248724 -119288535 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 5 838 393 230 79 10 chr5 33248848 33248949 -119288310 - PB1D10 SINE Alu -1 116 9 5 838 975 98 178 0 chr5 33249030 33249193 -119288066 + B2_Mm2 SINE B2 2 193 -2 5 838 837 210 24 0 chr5 33249214 33249381 -119287878 - B3 SINE B2 -44 172 2 5 838 351 0 0 0 chr5 33250044 33250083 -119287176 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 838 2309 223 114 21 chr5 33250092 33250835 -119286424 - RLTR40 LTR ERVK -5 812 1 5 838 756 259 117 45 chr5 33250857 33251104 -119286155 - B4 SINE B4 0 292 28 5 838 317 198 220 0 chr5 33251112 33251203 -119286056 - PB1D10 SINE Alu -1 116 6 5 838 411 239 124 33 chr5 33251434 33251555 -119285704 - B1_Mur2 SINE Alu -16 133 2 5 838 541 185 8 100 chr5 33252141 33252214 -119285045 - B1_Mur1 SINE Alu -6 143 72 5 838 1566 52 16 0 chr5 33252214 33252406 -119284853 - B2_Mm2 SINE B2 0 195 1 5 838 541 185 8 100 chr5 33252406 33252452 -119284807 - B1_Mur1 SINE Alu -78 71 35 5 838 183 42 0 0 chr5 33252475 33252499 -119284760 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 838 339 261 107 9 chr5 33252506 33252618 -119284641 - RSINE1 SINE B4 -38 127 5 5 838 398 162 315 0 chr5 33252713 33252824 -119284435 + B1_Mus2 SINE Alu 1 146 -1 5 838 924 144 203 17 chr5 33252839 33253016 -119284243 + B3 SINE B2 1 210 -6 5 838 483 63 0 0 chr5 33253040 33253103 -119284156 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 5 838 287 211 13 66 chr5 33253319 33253395 -119283864 + ID4 SINE ID 1 72 -11 5 838 480 280 6 89 chr5 33253850 33254007 -119283252 + B1F1 SINE Alu 1 144 -5 5 838 713 208 181 14 chr5 33254327 33254542 -119282717 - MTD LTR MaLR 0 419 169 5 838 430 171 13 0 chr5 33254560 33254636 -119282623 - MTD LTR MaLR -344 77 1 5 838 28 0 0 0 chr5 33255176 33255204 -119282055 + AT_rich Low_complexity Low_complexity 1 28 0 5 838 931 143 0 33 chr5 33255204 33255356 -119281903 - B1_Mur4 SINE Alu -2 148 2 5 838 1261 27 0 0 chr5 33255436 33255582 -119281677 + B1_Mus2 SINE Alu 2 147 0 5 838 23 0 0 0 chr5 33255582 33255605 -119281654 + AT_rich Low_complexity Low_complexity 1 23 0 5 838 450 279 10 2 chr5 33255915 33256033 -119281226 + PB1D10 SINE Alu 2 117 0 5 838 871 141 22 7 chr5 33256051 33256187 -119281072 + B1_Mur4 SINE Alu 5 142 -8 5 838 519 141 0 0 chr5 33256194 33256286 -119280973 + (GA)n Simple_repeat Simple_repeat 2 93 0 5 838 480 124 45 0 chr5 33256290 33256379 -119280880 + U6 snRNA snRNA 15 107 0 5 838 1476 56 6 0 chr5 33256475 33256654 -119280605 + B2_Mm1t SINE B2 1 180 -13 5 838 927 217 14 42 chr5 33256658 33256874 -119280385 + B3 SINE B2 1 210 -6 5 838 1103 92 0 6 chr5 33256892 33257057 -119280202 - B2_Mm2 SINE B2 -28 167 4 5 838 995 92 0 7 chr5 33257060 33257214 -119280045 + (TA)n Simple_repeat Simple_repeat 1 153 0 5 838 876 143 14 0 chr5 33257366 33257506 -119279753 - B1_Mus1 SINE Alu -1 147 6 5 838 220 286 42 14 chr5 33257612 33257683 -119279576 - ID SINE ID -151 73 1 5 838 325 342 18 0 chr5 33257831 33257945 -119279314 - B1F SINE Alu -17 132 17 5 838 1109 77 7 0 chr5 33258051 33258194 -119279065 + B1_Mus1 SINE Alu 5 148 0 5 838 498 153 29 67 chr5 33258289 33258394 -119278865 - PB1D9 SINE Alu -11 109 9 5 838 200 176 0 0 chr5 33258694 33258728 -119278531 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 838 385 228 25 0 chr5 33258764 33258843 -119278416 - B3A SINE B2 -109 89 9 5 838 472 301 85 20 chr5 33259300 33259500 -119277759 - B3 SINE B2 0 216 4 5 838 697 215 101 15 chr5 33259687 33259885 -119277374 - B3 SINE B2 0 216 2 5 838 901 147 35 0 chr5 33259922 33260065 -119277194 - B1_Mur4 SINE Alu -1 149 2 5 838 538 235 114 34 chr5 33260081 33260257 -119277002 + B3A SINE B2 1 190 -8 5 838 388 242 31 10 chr5 33260303 33260399 -119276860 - PB1D7 SINE Alu -18 102 5 5 838 323 285 29 21 chr5 33261222 33261362 -119275897 - B1F SINE Alu -8 141 1 5 838 351 0 0 0 chr5 33261397 33261436 -119275823 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 838 1040 210 9 32 chr5 33261436 33261657 -119275602 + B3 SINE B2 1 216 0 5 838 1341 81 0 61 chr5 33261663 33261860 -119275399 + B2_Mm2 SINE B2 2 186 -9 5 838 2094 72 3 0 chr5 33261869 33262159 -119275100 - ORR1A1 LTR MaLR -55 291 1 5 838 1089 86 0 0 chr5 33262159 33262311 -119274948 - B2_Mm2 SINE B2 -43 152 1 5 838 1742 21 0 0 chr5 33262333 33262526 -119274733 - B2_Mm1a SINE B2 0 193 1 5 838 344 165 122 10 chr5 33262526 33262624 -119274635 + MER2 DNA MER2_type 108 216 -129 5 838 6056 55 23 1 chr5 33262692 33263440 -119273819 - L1_Mus1 LINE L1 0 6567 5804 5 838 1423 80 11 0 chr5 33263521 33263709 -119273550 - B2_Mm1t SINE B2 -2 191 2 6 838 998 35 0 0 chr5 33263750 33263864 -119273395 - L1_Mus1 LINE L1 -201 6366 6253 6 838 486 212 92 70 chr5 33263882 33264024 -119273235 + B1_Mm SINE Alu 1 145 -2 6 838 424 204 217 17 chr5 33264119 33264234 -119273025 + B1_Mus2 SINE Alu 1 138 -9 6 838 506 221 71 0 chr5 33264667 33264794 -119272465 - B3A SINE B2 -36 162 27 6 838 609 220 83 8 chr5 33264944 33265077 -119272182 + B1_Mur1 SINE Alu 6 148 -1 6 838 242 242 140 21 chr5 33265210 33265303 -119271956 - L1MD2 LINE L1 -124 6235 6132 6 838 856 147 20 20 chr5 33265351 33265497 -119271762 + B1_Mm SINE Alu 1 146 -1 6 838 348 241 60 8 chr5 33265525 33265659 -119271600 + B1F1 SINE Alu 2 142 -7 6 838 209 205 0 0 chr5 33266246 33266285 -119270974 + GA-rich Low_complexity Low_complexity 3 41 0 6 838 425 269 90 0 chr5 33266324 33266458 -119270801 - B1_Mm SINE Alu -1 146 1 6 838 338 298 9 28 chr5 33266459 33266566 -119270693 - MLT1J-int LTR MaLR -19 1368 1264 6 838 202 29 0 54 chr5 33267377 33267414 -119269845 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 6 838 1254 41 0 0 chr5 33267416 33267563 -119269696 - B1_Mus1 SINE Alu 0 148 2 6 838 476 218 219 43 chr5 33267987 33268174 -119269085 - ID_B1 SINE B4 -4 220 1 6 838 213 39 0 0 chr5 33268236 33268262 -119268997 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 838 750 279 62 5 chr5 33268314 33268523 -119268736 - B4A SINE B4 -67 225 5 6 838 198 0 0 0 chr5 33268594 33268616 -119268643 + (A)n Simple_repeat Simple_repeat 1 22 0 6 838 818 152 7 65 chr5 33269052 33269207 -119268052 - B1_Mus2 SINE Alu -1 146 1 6 838 474 266 0 83 chr5 33270931 33270958 -119266301 + ID_B1 SINE B4 69 219 -2 6 838 786 191 0 14 chr5 33270958 33271096 -119266163 + B1_Mur1 SINE Alu 9 144 -5 6 838 824 123 0 0 chr5 33271517 33271639 -119265620 + B3 SINE B2 1 122 -94 6 838 320 327 133 24 chr5 33272321 33272531 -119264728 - B4A SINE B4 -55 237 5 6 838 281 288 0 0 chr5 33272826 33272892 -119264367 + ID4 SINE ID 2 67 -16 6 838 841 107 8 0 chr5 33273272 33273403 -119263856 + B1_Mus1 SINE Alu 17 148 0 6 838 303 200 17 0 chr5 33273938 33273998 -119263261 + Lx7 LINE L1 7282 7342 -354 6 838 1350 180 73 47 chr5 33274033 33274377 -119262882 + Lx7 LINE L1 7329 7681 -15 6 838 883 141 7 34 chr5 33274382 33274529 -119262730 - B1_Mus2 SINE Alu 0 147 5 6 838 180 97 0 0 chr5 33274529 33274560 -119262699 + (CTTTG)n Simple_repeat Simple_repeat 2 32 0 6 838 326 23 0 23 chr5 33274568 33274612 -119262647 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 6 838 895 67 148 0 chr5 33274612 33274747 -119262512 - B2_Mm2 SINE B2 -40 155 1 6 838 243 316 0 13 chr5 33274769 33274846 -119262413 + GA-rich Low_complexity Low_complexity 3 78 0 6 838 790 195 91 6 chr5 33274857 33275032 -119262227 + B3 SINE B2 1 190 -26 6 838 253 289 41 0 chr5 33275065 33275162 -119262097 + ID_B1 SINE B4 111 211 -13 6 838 541 249 37 18 chr5 33275190 33275438 -119261821 - L1MD LINE L1 -734 5445 5196 6 838 573 256 125 5 chr5 33275530 33275722 -119261537 + B3 SINE B2 1 215 -1 6 838 1087 124 0 12 chr5 33276015 33276186 -119261073 - B2_Mm2 SINE B2 -23 172 4 6 838 363 329 19 31 chr5 33277252 33277412 -119259847 - RSINE1 SINE B4 -6 159 2 6 838 1195 128 27 0 chr5 33277434 33277621 -119259638 - B2_Mm2 SINE B2 -1 194 3 6 838 408 198 15 44 chr5 33277669 33277841 -119259418 - B3 SINE B2 0 216 6 6 838 491 209 71 26 chr5 33277877 33277990 -119259269 + PB1D9 SINE Alu 1 118 -2 6 838 325 304 62 0 chr5 33278112 33278224 -119259035 - PB1D9 SINE Alu 0 120 2 6 838 1150 76 0 0 chr5 33278771 33278915 -119258344 + B1_Mus1 SINE Alu 5 148 0 6 838 26 0 0 0 chr5 33278915 33278941 -119258318 + AT_rich Low_complexity Low_complexity 1 26 0 6 838 349 276 31 0 chr5 33279044 33279142 -119258117 + PB1D10 SINE Alu 1 101 -16 6 838 401 280 74 31 chr5 33279433 33279595 -119257664 + MER20 DNA MER1_type 51 219 0 6 838 221 218 0 35 chr5 33279999 33280056 -119257203 + CT-rich Low_complexity Low_complexity 1 55 0 6 838 2386 130 15 17 chr5 33281017 33281434 -119255825 - MTC LTR MaLR -20 401 2 6 838 345 233 10 12 chr5 33281449 33281549 -119255710 + ID4_ SINE ID 7 102 -50 6 838 468 152 21 32 chr5 33281653 33281748 -119255511 + B3 SINE B2 2 95 -121 6 838 234 347 0 0 chr5 33282121 33282196 -119255063 - RLTR24 LTR ERV1 -454 75 1 6 838 463 184 144 18 chr5 33282261 33282372 -119254887 - B1_Mur4 SINE Alu -5 145 21 6 838 1247 34 0 0 chr5 33282404 33282551 -119254708 - B1_Mus1 SINE Alu 0 148 2 6 838 333 145 0 0 chr5 33282569 33282631 -119254628 + (TCTCCC)n Simple_repeat Simple_repeat 5 66 0 6 838 448 256 7 101 chr5 33282644 33282792 -119254467 - B1_Mm SINE Alu 0 147 14 6 838 333 0 0 0 chr5 33283004 33283041 -119254218 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 838 470 268 28 21 chr5 33283066 33283211 -119254048 - B3A SINE B2 -49 149 4 6 838 235 277 12 12 chr5 33283218 33283302 -119253957 - BC1_Mm scRNA scRNA -44 108 25 6 838 276 53 0 0 chr5 33283794 33283832 -119253427 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 6 838 1155 62 0 0 chr5 33283832 33283976 -119253283 - B1_Mus2 SINE Alu -3 144 1 6 838 1051 104 14 0 chr5 33284627 33284771 -119252488 - B1_Mus1 SINE Alu -2 146 1 6 838 32 0 0 0 chr5 33284946 33284978 -119252281 + AT_rich Low_complexity Low_complexity 1 32 0 6 838 416 331 0 8 chr5 33284978 33285100 -119252159 - PB1 SINE Alu -3 124 4 6 838 395 250 156 49 chr5 33285212 33285334 -119251925 + RSINE1 SINE B4 3 137 -28 6 838 965 66 0 111 chr5 33286095 33286248 -119251011 + B1_Mus2 SINE Alu 1 136 -11 6 838 201 196 0 0 chr5 33286524 33286575 -119250684 + (TGG)n Simple_repeat Simple_repeat 2 52 0 6 838 317 264 56 9 chr5 33286911 33287018 -119250241 + L1MB4 LINE L1 6063 6174 -6 6 838 375 294 65 25 chr5 33288391 33288484 -119248775 - L1MD1 LINE L1 -144 6035 5935 6 838 988 96 81 0 chr5 33288484 33288620 -119248639 - B1_Mm SINE Alu 0 147 1 6 838 375 275 53 11 chr5 33288620 33288755 -119248504 - L1MD1 LINE L1 -307 5935 5796 6 838 1264 27 7 0 chr5 33288789 33288935 -119248324 - B1_Mus1 SINE Alu 0 148 2 6 838 662 249 108 10 chr5 33289538 33289733 -119247526 + B3 SINE B2 2 215 -1 6 838 755 269 40 27 chr5 33289957 33290182 -119247077 - B4A SINE B4 -20 272 45 6 838 281 261 0 0 chr5 33290282 33290347 -119246912 - B3A SINE B2 -132 66 2 6 838 242 352 35 41 chr5 33290369 33290514 -119246745 - B1F SINE Alu -5 144 1 6 838 508 244 0 42 chr5 33290509 33290629 -119246630 - PB1 SINE Alu 0 127 13 6 838 482 240 49 8 chr5 33290631 33290753 -119246506 - B3A SINE B2 -69 129 3 6 838 512 318 0 0 chr5 33290852 33290984 -119246275 - ID_B1 SINE B4 0 224 93 6 838 413 281 49 39 chr5 33291640 33291844 -119245415 - L1MC5 LINE L1 -48 7913 7708 6 838 180 45 114 0 chr5 33291855 33291899 -119245360 + A-rich Low_complexity Low_complexity 3 51 0 6 838 629 274 7 0 chr5 33291901 33292047 -119245212 + RSINE1 SINE B4 4 150 -15 6 838 1089 124 51 0 chr5 33292083 33292260 -119244999 + B2_Mm2 SINE B2 3 188 -7 6 839 2102 162 45 7 chr5 33292350 33292754 -119244505 - MTC LTR MaLR -2 419 1 6 839 1012 128 0 0 chr5 33293206 33293354 -119243905 - B1_Mus1 SINE Alu 0 148 1 6 839 736 100 0 32 chr5 33294635 33294759 -119242500 - L1Md_F2 LINE L1 0 6582 6463 6 839 1103 75 0 24 chr5 33294786 33294951 -119242308 + B2_Mm2 SINE B2 2 162 -33 6 839 258 56 0 0 chr5 33294951 33294987 -119242272 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 6 839 452 317 119 15 chr5 33295297 33295499 -119241760 - LTR16A LTR ERVL 0 451 229 6 839 577 227 84 7 chr5 33295735 33295877 -119241382 + RSINE1 SINE B4 2 154 -11 6 839 180 0 0 0 chr5 33295900 33295920 -119241339 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 839 1517 59 5 0 chr5 33295944 33296131 -119241128 + B2_Mm1t SINE B2 1 188 -5 6 839 441 200 177 0 chr5 33296138 33296268 -119240991 + MER2 DNA MER2_type 72 224 -121 6 839 498 286 0 60 chr5 33296286 33296435 -119240824 + ID_B1 SINE B4 81 220 -4 6 839 352 100 17 0 chr5 33296441 33296501 -119240758 + B3A SINE B2 1 61 -137 6 839 3919 40 22 98 chr5 33296658 33297290 -119239969 + RLTR6_Mm LTR ERV1 1 584 -70 6 839 247 222 13 77 chr5 33297313 33297391 -119239868 - ID4_ SINE ID -9 74 2 6 839 458 187 33 0 chr5 33297402 33297493 -119239766 - PB1D10 SINE Alu -21 96 3 6 839 740 220 82 6 chr5 33297886 33298069 -119239190 - B3 SINE B2 -6 210 14 6 839 526 41 14 0 chr5 33298065 33298138 -119239121 + B1_Mm SINE Alu 74 147 0 6 839 180 0 0 0 chr5 33298142 33298162 -119239097 + (A)n Simple_repeat Simple_repeat 1 20 0 6 839 536 218 10 0 chr5 33298162 33298263 -119238996 - RSINE1 SINE B4 -61 104 3 6 839 211 73 73 0 chr5 33298946 33298987 -119238272 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 6 839 22 0 0 0 chr5 33299233 33299255 -119238004 + AT_rich Low_complexity Low_complexity 1 22 0 7 839 280 258 28 47 chr5 33299295 33299401 -119237858 - BC1_Mm scRNA scRNA -48 104 1 7 839 1175 34 0 33 chr5 33299529 33299679 -119237580 + B1_Mm SINE Alu 1 145 -2 7 839 723 172 0 0 chr5 33299706 33299828 -119237431 + B1_Mus2 SINE Alu 1 122 -25 7 839 1106 50 50 0 chr5 33299913 33300054 -119237205 - B1_Mus1 SINE Alu 0 148 1 7 839 193 57 28 28 chr5 33300391 33300427 -119236832 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 7 839 1565 62 16 0 chr5 33300996 33301188 -119236071 - B2_Mm2 SINE B2 0 195 1 7 839 187 261 76 43 chr5 33302572 33302664 -119234595 - MIRb SINE MIR -61 207 113 7 839 244 250 110 55 chr5 33303187 33303314 -119233945 + L1M5 LINE L1 2748 2881 -3265 7 839 717 191 66 27 chr5 33303403 33303586 -119233673 + MER2 DNA MER2_type 26 215 -130 7 839 640 245 29 87 chr5 33303590 33303796 -119233463 - RMER30 DNA MER1_type -1 201 8 7 839 231 338 0 0 chr5 33303806 33303880 -119233379 + MER2 DNA MER2_type 214 287 -58 6 839 740 200 14 7 chr5 33304294 33304440 -119232819 - B1_Mur3 SINE Alu -2 147 1 7 839 743 178 8 0 chr5 33304546 33304675 -119232584 - B1_Mus1 SINE Alu -17 131 2 7 839 257 345 78 17 chr5 33304783 33304963 -119232296 - L4 LINE RTE -152 1877 1687 7 839 558 222 43 36 chr5 33305130 33305270 -119231989 - ID_B1 SINE B4 -2 222 82 7 839 418 286 169 21 chr5 33305561 33305750 -119231509 + MER20 DNA MER1_type 1 217 -2 7 839 1217 171 0 14 chr5 33306065 33306279 -119230980 + URR1A DNA MER1_type 13 223 -3 7 839 588 152 0 0 chr5 33306812 33306926 -119230333 - B1F2 SINE Alu -1 148 35 7 839 649 158 9 27 chr5 33307830 33307941 -119229318 - B1_Mur3 SINE Alu -36 113 5 7 839 277 345 9 43 chr5 33307943 33308058 -119229201 + RSINE1 SINE B4 5 115 -50 7 839 203 167 0 0 chr5 33308062 33308104 -119229155 + T-rich Low_complexity Low_complexity 1 42 0 7 839 1879 161 21 48 chr5 33308595 33308968 -119228291 - ORR1B2 LTR MaLR 0 367 5 7 839 537 121 0 0 chr5 33309398 33309481 -119227778 + (TC)n Simple_repeat Simple_repeat 2 84 0 7 839 459 239 0 0 chr5 33309517 33309605 -119227654 - PB1D10 SINE Alu -19 98 11 7 839 285 210 16 0 chr5 33309554 33309616 -119227643 - B4A SINE B4 -146 146 84 7 839 22 0 0 0 chr5 33309880 33309902 -119227357 + AT_rich Low_complexity Low_complexity 1 22 0 7 839 358 246 204 15 chr5 33310063 33310195 -119227064 + B3A SINE B2 1 157 -41 7 839 254 304 26 0 chr5 33310528 33310623 -119226636 + MIRc SINE MIR 51 149 -59 7 839 207 0 0 0 chr5 33310655 33310678 -119226581 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 839 982 135 0 33 chr5 33310690 33310843 -119226416 - B1_Mur4 SINE Alu -2 148 1 7 839 330 278 35 44 chr5 33311613 33311726 -119225533 + PB1D9 SINE Alu 9 120 0 7 839 21 36 0 0 chr5 33312502 33312530 -119224729 + AT_rich Low_complexity Low_complexity 1 28 0 7 839 583 191 60 17 chr5 33312633 33312750 -119224509 + B3A SINE B2 2 123 -75 7 839 1190 62 0 0 chr5 33312823 33312969 -119224290 + B1_Mus1 SINE Alu 1 146 -2 7 839 270 0 0 0 chr5 33312969 33312999 -119224260 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 839 1146 161 173 40 chr5 33313019 33313348 -119223911 - ORR1D1 LTR MaLR 0 374 2 7 839 642 274 41 6 chr5 33313428 33313597 -119223662 - B3A SINE B2 -22 176 2 7 839 917 228 46 0 chr5 33313623 33313820 -119223439 - B3 SINE B2 -10 206 1 7 839 569 207 26 91 chr5 33313822 33313976 -119223283 - B1_Mur3 SINE Alu 0 149 6 7 839 21 0 0 0 chr5 33313981 33314002 -119223257 + AT_rich Low_complexity Low_complexity 1 21 0 7 839 1731 5 0 20 chr5 33314033 33314230 -119223029 - B2_Mm1a SINE B2 0 193 1 7 839 246 293 103 59 chr5 33314232 33314323 -119222936 + MER44A DNA MER2_type 4 109 -230 7 839 1559 48 16 0 chr5 33314323 33314510 -119222749 - B2_Mm2 SINE B2 -5 190 1 7 839 265 177 77 18 chr5 33314510 33314621 -119222638 + MER44A DNA MER2_type 110 215 -124 7 839 225 250 26 26 chr5 33314728 33314806 -119222453 - MER2 DNA MER2_type -120 225 148 7 839 1249 47 0 0 chr5 33315022 33315170 -119222089 + B1_Mus1 SINE Alu 1 148 0 7 839 230 104 61 20 chr5 33315299 33315348 -119221911 - L1P5 LINE L1 -337 5819 5769 7 839 1341 234 165 37 chr5 33315350 33316028 -119221231 - L1M2 LINE L1 -934 5209 4454 7 839 329 209 65 0 chr5 33316090 33316189 -119221070 - ID_B1 SINE B4 -63 161 62 7 839 267 79 0 0 chr5 33316770 33316808 -119220451 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 839 576 0 0 0 chr5 33316810 33316874 -119220385 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 839 755 259 12 24 chr5 33316880 33317046 -119220213 - B3A SINE B2 -34 164 1 7 839 535 257 111 28 chr5 33317732 33317912 -119219347 - L1MB7 LINE L1 -161 6023 5829 7 839 239 330 77 10 chr5 33318303 33318383 -119218876 - PB1D9 SINE Alu -3 117 30 7 839 1045 155 121 29 chr5 33318383 33318589 -119218670 + URR1B DNA MER1_type 1 225 0 7 839 239 330 77 10 chr5 33318589 33318612 -119218647 - PB1D9 SINE Alu -91 29 7 7 839 372 191 22 33 chr5 33318641 33318733 -119218526 + B1_Mm SINE Alu 1 91 -56 7 839 1400 85 16 11 chr5 33318753 33318943 -119218316 + B2_Mm2 SINE B2 1 191 -4 7 839 427 218 29 29 chr5 33318971 33319075 -119218184 + PB1D9 SINE Alu 10 113 -7 7 839 647 265 78 53 chr5 33321051 33321334 -119215925 - B4A SINE B4 -2 290 1 7 839 364 282 25 8 chr5 33321338 33321456 -119215803 - PB1D7 SINE Alu 0 120 1 7 839 721 247 102 9 chr5 33321468 33321693 -119215566 - L1MC1 LINE L1 -17 6316 6071 7 839 275 297 55 0 chr5 33321726 33321817 -119215442 + MER58A DNA MER1_type 44 139 -85 7 839 474 271 71 0 chr5 33322327 33322467 -119214792 - MER20 DNA MER1_type -6 213 64 7 839 210 105 0 0 chr5 33322627 33322665 -119214594 + (A)n Simple_repeat Simple_repeat 1 38 0 7 839 318 250 26 26 chr5 33322669 33322747 -119214512 + B1F SINE Alu 51 128 -21 7 839 1370 76 27 5 chr5 33322883 33323069 -119214190 - B2_Mm1a SINE B2 -2 191 2 7 839 372 339 90 25 chr5 33323175 33323375 -119213884 + MER20 DNA MER1_type 7 219 0 7 839 262 250 8 145 chr5 33323725 33323753 -119213506 + MT2B LTR ERVL 145 154 -447 7 839 692 188 8 0 chr5 33323753 33323881 -119213378 + B1_Mur4 SINE Alu 2 130 -20 7 839 1724 21 0 0 chr5 33323945 33324136 -119213123 + B2_Mm1t SINE B2 2 192 -1 7 839 481 321 25 61 chr5 33324281 33324477 -119212782 + B4A SINE B4 5 193 -99 7 839 242 169 206 44 chr5 33324484 33324552 -119212707 + RSINE1 SINE B4 34 112 -53 7 839 291 54 0 0 chr5 33324557 33324594 -119212665 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 839 400 195 134 45 chr5 33324616 33324750 -119212509 + B4A SINE B4 2 147 -145 7 839 340 161 9 143 chr5 33324779 33324989 -119212270 + RMER17C LTR ERVK 93 274 -136 7 839 210 91 0 0 chr5 33324990 33325023 -119212236 + (A)n Simple_repeat Simple_repeat 1 33 0 7 839 233 232 0 51 chr5 33325084 33325143 -119212116 + RSINE1 SINE B4 110 165 0 7 839 351 291 36 0 chr5 33325268 33325378 -119211881 + PB1D10 SINE Alu 2 115 -2 7 839 685 250 0 32 chr5 33325730 33325887 -119211372 - RSINE1 SINE B4 -10 155 4 7 839 1048 219 5 0 chr5 33327040 33327250 -119210009 - B3 SINE B2 -3 213 3 7 839 209 209 15 0 chr5 33328453 33328520 -119208739 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 839 218 269 77 77 chr5 33329052 33329169 -119208090 + PB1D7 SINE Alu 3 119 -1 7 839 396 220 44 0 chr5 33329081 33329172 -119208087 + ID_B1 SINE B4 130 224 0 7 839 671 127 91 0 chr5 33329224 33329334 -119207925 + PB1D9 SINE Alu 1 120 0 7 839 964 152 99 0 chr5 33329756 33329947 -119207312 - URR1A DNA MER1_type 0 226 17 7 839 259 25 24 24 chr5 33330617 33330658 -119206601 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 7 839 513 27 40 0 chr5 33331181 33331256 -119206003 + (TC)n Simple_repeat Simple_repeat 1 78 0 7 839 322 286 22 0 chr5 33331262 33331353 -119205906 - PB1D10 SINE Alu -15 102 10 7 839 238 338 25 0 chr5 33331285 33331365 -119205894 - ID_B1 SINE B4 -64 160 79 7 839 225 280 13 0 chr5 33331503 33331578 -119205681 - ID4_ SINE ID -6 77 2 7 839 581 182 76 55 chr5 33331850 33331995 -119205264 - B1_Mur1 SINE Alu -1 148 1 7 839 980 183 5 91 chr5 33332026 33332236 -119205023 + B3A SINE B2 1 192 -6 7 839 378 275 138 15 chr5 33332243 33332439 -119204820 + ID_B1 SINE B4 3 222 -2 7 839 330 26 0 0 chr5 33334304 33334343 -119202916 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 7 839 1373 69 10 26 chr5 33334737 33334931 -119202328 - B2_Mm2 SINE B2 -4 191 1 7 839 266 306 287 0 chr5 33335105 33335213 -119202046 + PB1D7 SINE Alu 4 142 -7 7 839 789 221 54 81 chr5 33335223 33335445 -119201814 + B3 SINE B2 1 216 0 7 839 709 220 42 16 chr5 33335761 33335950 -119201309 - B3A SINE B2 -4 194 1 7 839 331 288 0 71 chr5 33336137 33336264 -119200995 + PB1D9 SINE Alu 1 118 -2 7 839 473 338 96 0 chr5 33336630 33336766 -119200493 + RSINE1 SINE B4 17 165 0 7 839 24 32 0 0 chr5 33336773 33336804 -119200455 + AT_rich Low_complexity Low_complexity 1 31 0 7 839 215 154 0 25 chr5 33336878 33336918 -119200341 - MIRb SINE MIR -5 263 225 7 839 463 208 10 20 chr5 33338005 33338103 -119199156 + PB1 SINE Alu 23 119 -8 8 839 337 77 15 30 chr5 33338891 33338958 -119198301 + (TTG)n Simple_repeat Simple_repeat 2 67 0 8 839 1016 71 50 7 chr5 33338958 33339089 -119198170 - B1_Mus1 SINE Alu -9 139 2 8 839 398 250 43 26 chr5 33339545 33339660 -119197599 - PB1D10 SINE Alu 0 117 1 8 839 477 207 0 12 chr5 33339851 33339934 -119197325 - ID4 SINE ID 0 83 2 8 839 208 300 0 0 chr5 33340038 33340088 -119197171 + GA-rich Low_complexity Low_complexity 1 50 0 8 839 206 53 79 0 chr5 33341783 33341821 -119195438 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 8 839 578 71 12 0 chr5 33343006 33343090 -119194169 + (TG)n Simple_repeat Simple_repeat 1 85 0 8 839 207 100 0 0 chr5 33343092 33343122 -119194137 + (TGG)n Simple_repeat Simple_repeat 3 32 0 8 839 369 265 7 164 chr5 33343142 33343210 -119194049 - PB1D7 SINE Alu 0 120 62 8 839 1235 62 0 0 chr5 33343210 33343355 -119193904 + B1_Mus2 SINE Alu 2 146 -1 8 839 369 265 7 164 chr5 33343355 33343426 -119193833 - PB1D7 SINE Alu -59 61 3 8 839 553 254 22 0 chr5 33344001 33344139 -119193120 + L2 LINE L2 2475 2615 -804 8 839 255 230 0 90 chr5 33344501 33344568 -119192691 + ID4_ SINE ID 2 62 -21 8 839 224 260 67 133 chr5 33344568 33344621 -119192638 + ID_B1 SINE B4 2 113 -111 8 839 268 233 17 0 chr5 33344629 33344689 -119192570 + MIR SINE MIR 91 151 -111 8 839 477 291 65 18 chr5 33344691 33344745 -119192514 + B4 SINE B4 29 90 -202 8 839 779 151 0 0 chr5 33344745 33344864 -119192395 + B1_Mus1 SINE Alu 1 119 -29 8 839 492 239 44 0 chr5 33344914 33345027 -119192232 - PB1D7 SINE Alu -2 118 1 8 839 1418 139 0 14 chr5 33345109 33345320 -119191939 - B3 SINE B2 -8 208 1 8 839 1395 265 78 11 chr5 33345635 33345982 -119191277 - MTE2b LTR MaLR -8 371 2 8 839 581 236 203 10 chr5 33346529 33346726 -119190533 + Charlie18a DNA MER1_type 22 256 -86 8 839 222 214 11 3 chr5 33346762 33346825 -119190434 - MIR SINE MIR -188 88 24 8 839 358 262 111 9 chr5 33346972 33347080 -119190179 + PB1D9 SINE Alu 1 119 -1 8 839 271 333 0 0 chr5 33347231 33347309 -119189950 + MIRb SINE MIR 35 112 -156 8 839 923 154 7 0 chr5 33347336 33347479 -119189780 + B1_Mur4 SINE Alu 1 144 -6 8 839 198 0 0 0 chr5 33347482 33347504 -119189755 + (TAA)n Simple_repeat Simple_repeat 2 23 0 8 839 1182 218 0 0 chr5 33347559 33347765 -119189494 + B3 SINE B2 1 206 -10 8 839 273 330 80 20 chr5 33347797 33347998 -119189261 - L2c LINE L2 -175 3212 3000 8 839 867 150 0 39 chr5 33348031 33348184 -119189075 + B1_Mus2 SINE Alu 1 147 0 8 839 183 261 110 55 chr5 33349862 33349935 -119187324 - MIRb SINE MIR -149 119 43 8 839 252 0 0 0 chr5 33349971 33349999 -119187260 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 8 839 324 395 23 0 chr5 33350002 33350179 -119187080 - MIRc SINE MIR -3 265 85 8 839 544 189 12 133 chr5 33350241 33350296 -119186963 + RLTR11B LTR ERVK 309 356 -97 8 839 808 197 0 0 chr5 33350296 33350428 -119186831 + B1F SINE Alu 1 132 -17 8 839 544 189 12 133 chr5 33350428 33350537 -119186722 + RLTR11B LTR ERVK 357 453 0 8 839 837 207 18 86 chr5 33350891 33351113 -119186146 - B3 SINE B2 -8 208 2 8 839 198 323 73 96 chr5 33351649 33351868 -119185391 - L2a LINE L2 -98 3328 3115 8 839 182 37 37 0 chr5 33352307 33352334 -119184925 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 8 839 207 363 64 8 chr5 33354188 33354313 -119182946 - L2a LINE L2 -6 3420 3289 8 839 278 146 256 0 chr5 33354647 33354718 -119182541 + PB1D10 SINE Alu 24 113 -7 8 839 1030 142 222 0 chr5 33355414 33355590 -119181669 - B3 SINE B2 -1 215 1 8 839 716 245 24 72 chr5 33355611 33355818 -119181441 + B3A SINE B2 1 197 -1 8 839 862 158 19 76 chr5 33355842 33356000 -119181259 + B1_Mur1 SINE Alu 1 149 0 8 839 216 0 0 0 chr5 33356186 33356210 -119181049 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 839 936 126 7 29 chr5 33356213 33356352 -119180907 - B1_Mur3 SINE Alu -13 136 1 8 839 249 318 32 17 chr5 33356542 33356708 -119180551 - MIR SINE MIR -67 201 35 8 839 490 54 27 0 chr5 33356808 33356882 -119180377 + (TC)n Simple_repeat Simple_repeat 1 76 0 8 839 324 293 95 15 chr5 33357130 33357260 -119179999 + MIRb SINE MIR 25 157 -105 8 839 1254 41 0 0 chr5 33357399 33357546 -119179713 - B1_Mm SINE Alu 0 147 1 8 839 339 271 28 14 chr5 33357565 33357636 -119179623 + RSINE1 SINE B4 27 98 -67 8 839 269 272 141 0 chr5 33357711 33357803 -119179456 - PB1D7 SINE Alu -12 108 4 8 839 526 181 173 43 chr5 33357852 33358014 -119179245 - B3A SINE B2 -11 187 5 8 839 435 286 0 43 chr5 33358087 33358204 -119179055 + PB1D9 SINE Alu 9 120 0 8 839 180 0 0 0 chr5 33358978 33358998 -119178261 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 8 839 677 221 0 8 chr5 33358999 33359131 -119178128 - B1_Mus2 SINE Alu -16 131 1 8 839 228 395 13 0 chr5 33359144 33359220 -119178039 - ID SINE ID -146 78 2 8 839 425 266 91 34 chr5 33359309 33359484 -119177775 - B4 SINE B4 -29 263 79 8 839 347 220 147 60 chr5 33359621 33359737 -119177522 + PB1D10 SINE Alu 2 127 0 8 839 429 167 0 0 chr5 33359942 33360020 -119177239 + (TA)n Simple_repeat Simple_repeat 2 79 0 8 839 1293 20 7 0 chr5 33360023 33360169 -119177090 + B1_Mus2 SINE Alu 1 147 0 8 839 198 0 0 0 chr5 33360171 33360193 -119177066 + (CAAAAA)n Simple_repeat Simple_repeat 5 26 0 8 839 306 0 0 0 chr5 33360324 33360358 -119176901 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 839 513 227 0 35 chr5 33360358 33360472 -119176787 - PB1D9 SINE Alu -10 110 1 8 839 189 0 0 0 chr5 33361464 33361485 -119175774 + (CCCG)n Simple_repeat Simple_repeat 4 24 0 8 839 213 175 0 0 chr5 33361639 33361679 -119175580 + (CGAG)n Simple_repeat Simple_repeat 3 42 0 8 839 30 59 0 0 chr5 33361819 33361870 -119175389 + GC_rich Low_complexity Low_complexity 1 51 0 8 839 213 39 0 0 chr5 33363802 33363828 -119173431 + (T)n Simple_repeat Simple_repeat 1 26 0 8 839 768 85 246 0 chr5 33363828 33363946 -119173313 - B1_Mus1 SINE Alu 0 148 2 8 839 557 296 14 0 chr5 33364049 33364191 -119173068 - ID_B1 SINE B4 0 224 81 8 839 228 217 14 42 chr5 33364498 33364570 -119172689 + ID4 SINE ID 3 72 -11 8 839 337 275 15 14 chr5 33364922 33365016 -119172243 - PB1D10 SINE Alu -40 77 1 8 839 1216 61 0 0 chr5 33365242 33365389 -119171870 - B1_Mus1 SINE Alu 0 148 2 8 839 321 115 19 19 chr5 33365458 33365511 -119171748 - B1_Mus1 SINE Alu -95 53 1 8 839 255 308 115 0 chr5 33365656 33365760 -119171499 + B1F SINE Alu 2 117 0 8 839 334 219 31 0 chr5 33365895 33365959 -119171300 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 8 839 292 290 14 0 chr5 33365897 33365966 -119171293 - BC1_Mm scRNA scRNA -81 71 2 8 839 879 234 100 70 chr5 33366366 33366637 -119170622 + B4 SINE B4 7 285 -7 8 839 354 362 8 8 chr5 33366982 33367099 -119170160 - ID_B1 SINE B4 -17 207 91 8 839 378 235 0 101 chr5 33367003 33367112 -119170147 - PB1D10 SINE Alu -19 98 1 8 839 775 103 17 25 chr5 33367488 33367608 -119169651 + PB1D9 SINE Alu 1 119 -1 8 839 705 182 40 0 chr5 33367623 33367749 -119169510 + B1_Mur4 SINE Alu 20 150 0 8 839 286 331 102 55 chr5 33367831 33367959 -119169300 + B3A SINE B2 27 160 -38 8 839 421 116 0 80 chr5 33367968 33368043 -119169216 + B1_Mur4 SINE Alu 80 148 -2 8 839 356 309 37 86 chr5 33368076 33368239 -119169020 - MLT1B LTR MaLR -34 356 202 8 839 318 287 22 22 chr5 33368229 33368318 -119168941 - MLT1B LTR MaLR -378 89 1 8 839 692 203 104 8 chr5 33368651 33368785 -119168474 + B1_Mus1 SINE Alu 2 148 0 8 839 518 239 113 17 chr5 33368838 33368953 -119168306 - B3A SINE B2 -70 128 3 8 839 383 248 257 0 chr5 33370965 33371078 -119166181 + B1_Mur2 SINE Alu 1 142 -7 8 839 228 234 256 13 chr5 33371154 33371232 -119166027 + RSINE1 SINE B4 12 108 -57 8 839 616 179 82 0 chr5 33371246 33371380 -119165879 - B1_Mur2 SINE Alu 0 149 5 8 839 838 128 20 54 chr5 33371422 33371571 -119165688 + B1_Mus1 SINE Alu 2 145 -3 8 839 768 286 45 53 chr5 33372096 33372343 -119164916 - B4A SINE B4 -33 259 15 8 839 707 245 29 0 chr5 33372760 33372899 -119164360 + RSINE1 SINE B4 3 145 -20 8 839 183 80 0 0 chr5 33372909 33372934 -119164325 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 8 839 279 0 0 0 chr5 33373416 33373447 -119163812 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 839 347 323 64 8 chr5 33373562 33373687 -119163572 - MER94 DNA AcHobo 0 134 3 8 839 201 342 124 18 chr5 33373732 33373845 -119163414 - L2b LINE L2 -5 3370 3246 8 839 238 277 46 0 chr5 33374080 33374145 -119163114 + B1F SINE Alu 3 70 -79 8 839 333 68 0 0 chr5 33374320 33374364 -119162895 + (GA)n Simple_repeat Simple_repeat 2 45 0 8 839 237 146 0 0 chr5 33375196 33375244 -119162015 + (CACCC)n Simple_repeat Simple_repeat 2 49 0 8 839 495 301 61 28 chr5 33375321 33375533 -119161726 - MLT2C1 LTR ERVL -100 297 79 8 839 1232 48 0 0 chr5 33375602 33375749 -119161510 - B1_Mus2 SINE Alu 0 147 1 8 839 1512 40 6 0 chr5 33376275 33376452 -119160807 - B2_Mm1t SINE B2 -14 179 2 9 839 404 220 148 82 chr5 33376485 33376561 -119160698 + RMER30 DNA MER1_type 5 96 -106 9 839 514 231 18 9 chr5 33376561 33376670 -119160589 + PB1D9 SINE Alu 1 110 -10 9 839 189 0 0 0 chr5 33376670 33376691 -119160568 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 839 404 220 148 82 chr5 33376691 33376796 -119160463 + RMER30 DNA MER1_type 97 198 -4 9 839 1505 138 87 185 chr5 33377354 33377780 -119159479 - ORR1C2 LTR MaLR 0 384 1 9 839 622 273 6 85 chr5 33377820 33377973 -119159286 + RSINE1 SINE B4 4 142 -23 9 839 279 0 0 0 chr5 33377973 33378004 -119159255 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 839 622 273 6 85 chr5 33378004 33378026 -119159233 + RSINE1 SINE B4 143 165 0 9 839 1248 48 0 0 chr5 33378082 33378229 -119159030 - B1_Mus2 SINE Alu 0 147 1 9 839 376 125 163 32 chr5 33378653 33378768 -119158491 - B2_Mm2 SINE B2 -2 191 47 9 839 1076 70 117 31 chr5 33378800 33378963 -119158296 - B2_Mm1t SINE B2 -14 179 3 9 839 846 234 54 15 chr5 33378967 33379171 -119158088 - B3 SINE B2 0 216 5 9 839 709 244 64 75 chr5 33379597 33379863 -119157396 - Lx6 LINE L1 -4 7456 7194 9 839 413 393 0 0 chr5 33379913 33380091 -119157168 + (CAAGG)n Simple_repeat Simple_repeat 1 178 0 9 839 1212 204 8 12 chr5 33380213 33380466 -119156793 - Lx6 LINE L1 -174 7286 7035 9 839 3065 57 0 0 chr5 33380696 33381079 -119156180 - L1Md_F2 LINE L1 0 6582 6200 9 839 224 136 204 0 chr5 33381261 33381305 -119155954 - L2b LINE L2 -4 3371 3319 9 839 674 146 88 16 chr5 33381546 33381671 -119155588 + B1_Mus2 SINE Alu 14 147 0 9 839 1203 61 65 95 chr5 33381717 33381917 -119155342 + B2_Mm2 SINE B2 2 195 0 9 839 23 0 0 0 chr5 33382731 33382754 -119154505 + AT_rich Low_complexity Low_complexity 1 23 0 9 839 758 207 7 0 chr5 33382754 33382894 -119154365 - B1_Mm SINE Alu 0 147 7 9 839 291 317 18 132 chr5 33382763 33382930 -119154329 - MT2B2 LTR ERVL -299 285 138 9 839 1246 41 7 0 chr5 33382993 33383140 -119154119 + B1_Mus1 SINE Alu 1 148 0 9 839 220 27 26 26 chr5 33383360 33383398 -119153861 + (TTA)n Simple_repeat Simple_repeat 3 40 0 9 839 238 314 0 0 chr5 33383399 33383450 -119153809 - tRNA-Ala-GCY_ tRNA tRNA -8 67 17 9 839 372 225 14 19 chr5 33383520 33383610 -119153649 - ORR1D2 LTR MaLR 0 421 309 9 839 396 197 0 58 chr5 33383626 33383885 -119153374 + (CTTTG)n Simple_repeat Simple_repeat 1 243 0 9 839 805 246 114 29 chr5 33383887 33384153 -119153106 - ORR1D2 LTR MaLR -65 305 1 9 839 332 246 88 44 chr5 33384154 33384236 -119153023 - L1M4 LINE L1 -1027 5119 5030 9 839 547 254 35 21 chr5 33384236 33384381 -119152878 - B1_Mur1 SINE Alu 0 149 3 9 839 332 246 88 44 chr5 33384381 33384434 -119152825 - L1M4 LINE L1 -1117 5029 4978 9 839 22 35 0 0 chr5 33384434 33384463 -119152796 + AT_rich Low_complexity Low_complexity 1 29 0 9 839 1270 34 0 0 chr5 33384463 33384610 -119152649 - B1_Mus2 SINE Alu 0 147 1 9 839 892 133 39 0 chr5 33384618 33384746 -119152513 - B1_Mur4 SINE Alu -7 143 11 9 839 306 231 314 33 chr5 33384763 33384884 -119152375 - L1M4 LINE L1 -1147 4999 4845 9 839 2335 196 70 9 chr5 33384884 33385414 -119151845 + Lx7 LINE L1 6753 7314 -382 9 839 211 293 0 17 chr5 33385432 33385491 -119151768 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 839 522 249 35 41 chr5 33385493 33385690 -119151569 + Lx7 LINE L1 7501 7696 0 9 839 462 249 54 104 chr5 33386467 33386727 -119150532 - L1MB5 LINE L1 0 6174 5928 9 839 198 0 0 0 chr5 33386727 33386749 -119150510 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 9 839 1203 41 7 0 chr5 33386760 33386906 -119150353 - B1_Mm SINE Alu 0 147 1 9 839 2894 112 119 8 chr5 33387081 33387157 -119150102 - RLTR20A LTR ERVK 0 541 443 9 839 306 0 0 0 chr5 33387157 33387191 -119150068 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 839 2894 112 119 8 chr5 33387191 33387601 -119149658 - RLTR20A LTR ERVK -99 442 2 9 839 914 193 63 24 chr5 33387671 33387878 -119149381 - B3 SINE B2 0 216 2 9 839 1775 216 31 36 chr5 33388021 33388406 -119148853 - MTD LTR MaLR -36 383 1 9 839 237 314 78 10 chr5 33388486 33388589 -119148670 - PB1D10 SINE Alu -7 110 1 9 839 231 243 0 51 chr5 33388824 33388837 -119148422 - ID_B1 SINE B4 0 224 180 9 839 360 136 0 0 chr5 33388837 33388896 -119148363 - B1F1 SINE Alu -13 136 78 9 839 1351 50 66 16 chr5 33389236 33389269 -119147990 - B2_Mm2 SINE B2 -2 193 164 9 839 549 0 0 0 chr5 33389269 33389330 -119147929 + (TA)n Simple_repeat Simple_repeat 2 62 0 9 839 1351 50 66 16 chr5 33389330 33389479 -119147780 - B2_Mm2 SINE B2 -32 163 3 9 839 887 190 18 55 chr5 33390143 33390360 -119146899 + B3 SINE B2 8 216 0 9 839 245 198 20 206 chr5 33390643 33390745 -119146514 - MT2B2 LTR ERVL -335 249 167 9 839 326 239 196 0 chr5 33390655 33390747 -119146512 - B1F1 SINE Alu -39 110 1 9 839 239 338 13 0 chr5 33390678 33390755 -119146504 - ID_B1 SINE B4 -74 150 73 9 839 294 241 0 94 chr5 33390813 33390837 -119146422 + L1M2 LINE L1 2732 2751 -3392 9 839 1397 55 60 11 chr5 33390837 33391022 -119146237 - B2_Mm2 SINE B2 0 195 2 9 839 294 241 0 94 chr5 33391022 33391125 -119146134 + L1M2 LINE L1 2752 2847 -3296 9 839 1262 261 52 18 chr5 33391135 33391596 -119145663 + L1M2 LINE L1 5254 5737 -560 9 839 255 114 0 0 chr5 33391612 33391656 -119145603 + (TC)n Simple_repeat Simple_repeat 2 45 0 9 839 231 36 0 0 chr5 33391656 33391684 -119145575 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 839 2113 171 40 20 chr5 33392049 33392454 -119144805 + MTC LTR MaLR 1 413 -8 9 839 208 187 75 32 chr5 33392455 33392549 -119144710 + (CATATA)n Simple_repeat Simple_repeat 4 101 0 9 839 1145 62 0 33 chr5 33393572 33393722 -119143537 + B1_Mus2 SINE Alu 2 146 -1 9 839 287 238 238 0 chr5 33394274 33394375 -119142884 + B1F2 SINE Alu 25 149 0 9 839 306 0 0 0 chr5 33395284 33395318 -119141941 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 839 352 317 32 32 chr5 33395363 33395487 -119141772 - PB1 SINE Alu -1 126 3 9 839 709 167 0 9 chr5 33395504 33395619 -119141640 - PB1D9 SINE Alu -5 115 2 9 839 1213 99 17 6 chr5 33396766 33396939 -119140320 - B2_Mm2 SINE B2 -19 176 2 9 839 914 171 0 6 chr5 33396955 33397132 -119140127 + CT-rich Low_complexity Low_complexity 1 176 0 9 839 1165 168 0 0 chr5 33397140 33397331 -119139928 - B3 SINE B2 -7 209 19 9 839 387 242 142 9 chr5 33397322 33397494 -119139765 + MLT1B LTR MaLR 148 346 -44 9 839 426 20 0 0 chr5 33397747 33397798 -119139461 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 839 287 221 43 25 chr5 33397832 33397994 -119139265 + CT-rich Low_complexity Low_complexity 4 168 0 9 839 751 270 19 39 chr5 33398041 33398249 -119139010 - ID_B1 SINE B4 -20 204 1 9 839 249 272 54 60 chr5 33398983 33399151 -119138108 - MIR3 SINE MIR -22 186 20 9 839 354 123 0 0 chr5 33399516 33399573 -119137686 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 839 436 237 35 0 chr5 33399576 33399690 -119137569 - B3A SINE B2 -43 155 38 9 839 1013 208 5 24 chr5 33399700 33399907 -119137352 + B3 SINE B2 3 205 -11 9 839 246 186 0 0 chr5 33399982 33400025 -119137234 - B3A SINE B2 -153 45 3 9 839 621 300 22 0 chr5 33400118 33400298 -119136961 - ID_B1 SINE B4 -39 185 2 9 839 590 135 10 0 chr5 33400309 33400413 -119136846 + (TCCC)n Simple_repeat Simple_repeat 1 105 0 9 839 689 161 13 0 chr5 33400418 33400494 -119136765 + polypyrimidine Low_complexity Low_complexity 83 158 0 9 839 1097 62 0 52 chr5 33400494 33400648 -119136611 - B1_Mus1 SINE Alu -2 146 1 9 839 689 161 13 0 chr5 33400648 33400726 -119136533 + polypyrimidine Low_complexity Low_complexity 3 82 0 9 839 522 231 45 30 chr5 33400729 33400863 -119136396 - B1_Mur3 SINE Alu -13 136 1 9 839 243 257 27 13 chr5 33400889 33400964 -119136295 - PB1D10 SINE Alu -11 106 31 9 839 579 120 18 9 chr5 33400986 33401095 -119136164 + (GA)n Simple_repeat Simple_repeat 1 110 0 9 839 902 208 7 26 chr5 33401197 33401398 -119135861 + B3 SINE B2 16 193 -2 9 839 519 17 0 0 chr5 33401671 33401731 -119135528 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 9 839 1070 145 10 41 chr5 33401922 33402116 -119135143 - B2_Mm2 SINE B2 -7 188 1 9 839 21 0 0 0 chr5 33402137 33402158 -119135101 + AT_rich Low_complexity Low_complexity 1 21 0 9 839 251 260 24 61 chr5 33402183 33402265 -119134994 - B3A SINE B2 -60 138 60 9 839 15087 169 97 19 chr5 33402266 33403304 -119133955 - L1_Mur2 LINE L1 -861 5025 3549 9 839 1129 167 45 268 chr5 33403304 33403627 -119133632 + ORR1B1 LTR MaLR 1 205 -189 9 839 234 0 0 0 chr5 33403627 33403653 -119133606 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 839 1129 167 45 268 chr5 33403653 33403836 -119133423 + ORR1B1 LTR MaLR 206 394 0 9 839 15087 142 29 20 chr5 33403836 33405289 -119131970 - L1_Mur2 LINE L1 -2329 3548 2056 9 839 360 0 0 0 chr5 33405289 33405329 -119131930 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 839 15087 142 29 20 chr5 33405329 33406108 -119131151 - L1_Mur2 LINE L1 -3822 2055 1287 9 839 14123 55 3 1 chr5 33406435 33408875 -119128384 - L1Md_F2 LINE L1 0 6582 4137 9 839 1222 195 22 41 chr5 33408877 33409229 -119128030 - L1_Mur2 LINE L1 -6428 1300 882 9 839 482 277 18 0 chr5 33409377 33409489 -119127770 - B1_Mur1 SINE Alu -5 144 31 9 839 419 214 206 0 chr5 33409516 33409642 -119127617 - L1MA6 LINE L1 -6 6294 6143 9 839 1273 136 16 0 chr5 33409643 33409834 -119127425 + B2_Mm2 SINE B2 1 194 -1 9 839 684 209 12 75 chr5 33409862 33410022 -119127237 - B1_Mur4 SINE Alu 0 150 1 9 839 264 276 41 0 chr5 33410553 33410651 -119126608 + MER3 DNA MER1_type 3 104 -105 9 839 488 321 117 90 chr5 33410706 33411141 -119126118 - MLT1C LTR MaLR -3 464 18 9 839 387 243 169 0 chr5 33411178 33411326 -119125933 - MER5A DNA MER1_type -15 174 2 9 839 779 249 235 26 chr5 33411342 33411725 -119125534 - MLT1C LTR MaLR -3 464 2 9 839 715 249 39 17 chr5 33411768 33411948 -119125311 - B3 SINE B2 -6 210 27 9 839 1147 81 0 0 chr5 33411977 33412125 -119125134 - B1_Mus1 SINE Alu 0 148 1 9 839 1318 57 114 0 chr5 33412125 33412299 -119124960 - B2_Mm2 SINE B2 0 195 1 9 839 221 179 0 0 chr5 33412299 33412338 -119124921 - B3A SINE B2 -159 39 1 9 839 799 277 56 7 chr5 33412529 33412816 -119124443 + RMER15 LTR ERVL 275 575 0 1 839 795 268 26 52 chr5 33413186 33413533 -119123726 - RLTR15 LTR ERVK -17 342 5 1 839 256 286 0 0 chr5 33413551 33413621 -119123638 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 1 839 1884 194 11 112 chr5 33413834 33414066 -119123193 - MTD LTR MaLR 0 419 211 1 839 1650 32 11 0 chr5 33414066 33414256 -119123003 - B2_Mm1t SINE B2 0 193 2 1 839 1884 194 11 112 chr5 33414256 33414395 -119122864 - MTD LTR MaLR -209 210 94 1 839 880 234 52 33 chr5 33414395 33414607 -119122652 - B3 SINE B2 0 216 1 1 839 1884 194 11 112 chr5 33414607 33414699 -119122560 - MTD LTR MaLR -326 93 2 1 839 194 91 0 29 chr5 33414699 33414733 -119122526 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1 839 437 246 229 0 chr5 33414773 33414948 -119122311 + ID_B1 SINE B4 1 215 -9 1 839 277 298 11 0 chr5 33415060 33415154 -119122105 + MER57E1 LTR ERV1 278 372 0 1 839 229 291 10 140 chr5 33415792 33415892 -119121367 + MT2B2 LTR ERVL 154 240 -344 1 839 463 266 40 8 chr5 33415821 33415946 -119121313 + B1F1 SINE Alu 13 141 -8 1 839 210 276 79 0 chr5 33416355 33416431 -119120828 + L2a LINE L2 3343 3424 -2 1 839 3413 33 5 0 chr5 33416522 33416916 -119120343 - MTA_Mm LTR MaLR 0 396 1 1 839 441 95 0 0 chr5 33417052 33417115 -119120144 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 839 1190 55 7 0 chr5 33417136 33417282 -119119977 - B1_Mm SINE Alu 0 147 1 1 839 193 244 135 24 chr5 33417289 33417415 -119119844 + MIRb SINE MIR 129 268 0 1 839 1402 34 39 11 chr5 33417422 33417600 -119119659 - B2_Mm2 SINE B2 -11 184 2 1 839 495 48 0 0 chr5 33417648 33417710 -119119549 + (TCCC)n Simple_repeat Simple_repeat 3 64 0 1 839 457 212 126 8 chr5 33417745 33417864 -119119395 - B1_Mur1 SINE Alu -16 133 1 1 839 396 277 153 61 chr5 33417893 33418089 -119119170 - ID_B1 SINE B4 -9 215 2 1 839 203 275 179 90 chr5 33418204 33418360 -119118899 - MIRb SINE MIR -79 189 20 1 839 1589 82 8 29 chr5 33418366 33418604 -119118655 - L1_Mus3 LINE L1 -7 6631 6399 1 839 396 0 0 0 chr5 33419724 33419768 -119117491 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 839 2105 118 81 17 chr5 33420080 33420426 -119116833 + RLTR9A LTR ERVK 1 368 0 1 839 1942 264 120 10 chr5 33420507 33421116 -119116143 - Lx7 LINE L1 -384 7312 6637 1 839 901 146 31 92 chr5 33421116 33421312 -119115947 - B2_Mm2 SINE B2 -10 185 2 1 839 2416 253 63 16 chr5 33421312 33421958 -119115301 - Lx7 LINE L1 -1051 6645 5969 1 839 180 0 0 0 chr5 33421959 33421979 -119115280 + (CCTA)n Simple_repeat Simple_repeat 1 20 0 1 839 1116 133 0 0 chr5 33421979 33422159 -119115100 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 1 839 513 84 0 0 chr5 33422160 33422231 -119115028 + (CCTA)n Simple_repeat Simple_repeat 1 71 0 1 839 530 245 73 36 chr5 33422505 33422670 -119114589 + B3A SINE B2 46 216 0 1 839 410 209 45 2 chr5 33422719 33422817 -119114442 + L1MC2 LINE L1 5471 5570 -2425 1 839 547 324 7 0 chr5 33422973 33423109 -119114150 + RSINE1 SINE B4 29 165 0 1 839 189 107 0 0 chr5 33423112 33423140 -119114119 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 839 284 229 14 0 chr5 33423155 33423225 -119114034 + L1MC2 LINE L1 5838 5908 -436 1 840 733 209 66 18 chr5 33423395 33423561 -119113698 - B4 SINE B4 -114 178 5 1 840 753 12 0 0 chr5 33424759 33424845 -119112414 + (GAA)n Simple_repeat Simple_repeat 1 86 0 1 840 4964 203 44 69 chr5 33424934 33426118 -119111141 + RMER1A Other Other 1 930 -136 1 840 423 0 0 0 chr5 33426118 33426165 -119111094 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 840 4964 194 50 13 chr5 33426165 33426246 -119111013 + RMER1A Other Other 909 991 -39 1 840 217 195 77 13 chr5 33426365 33426443 -119110816 - L2 LINE L2 -674 2745 2663 1 840 306 0 0 0 chr5 33428437 33428471 -119108788 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 840 275 319 102 53 chr5 33428611 33429056 -119108203 + MER34A LTR ERV1 75 513 -29 1 840 383 305 51 11 chr5 33429080 33429253 -119108006 + B3A SINE B2 30 205 -11 1 840 8959 162 32 30 chr5 33429647 33431416 -119105843 - Lx7 LINE L1 -1965 5731 3956 1 840 2694 176 109 89 chr5 33431406 33432447 -119104812 - Lx7 LINE L1 -3796 2084 1025 1 840 821 123 88 55 chr5 33432447 33432628 -119104631 - B2_Mm2 SINE B2 -8 187 1 1 840 2074 246 83 31 chr5 33432628 33433024 -119104235 - Lx7 LINE L1 -6704 1024 594 1 840 273 119 0 0 chr5 33433097 33433139 -119104120 + (TATG)n Simple_repeat Simple_repeat 1 42 0 1 840 725 246 29 11 chr5 33433141 33433310 -119103949 - B3A SINE B2 -11 184 24 1 840 510 272 38 96 chr5 33433360 33433448 -119103811 - L1ME2 LINE L1 -304 5860 5781 1 840 412 188 69 0 chr5 33433448 33433549 -119103710 - PB1D7 SINE Alu -8 112 5 1 840 510 272 38 96 chr5 33433549 33433753 -119103506 - L1ME2 LINE L1 -384 5780 5585 1 840 283 53 0 0 chr5 33434093 33434131 -119103128 - tRNA-Met_ tRNA tRNA -38 38 1 1 840 22 0 0 0 chr5 33435023 33435045 -119102214 + AT_rich Low_complexity Low_complexity 1 22 0 1 840 771 264 130 98 chr5 33435137 33435550 -119101709 - L1MC2 LINE L1 -37 6307 5893 1 840 614 241 8 0 chr5 33435550 33435683 -119101576 - B1_Mur3 SINE Alu -15 134 1 1 840 771 264 130 98 chr5 33435683 33435706 -119101553 - L1MC2 LINE L1 -452 5892 5873 1 840 906 80 0 0 chr5 33435706 33435843 -119101416 + (TG)n Simple_repeat Simple_repeat 1 137 0 1 840 848 213 0 7 chr5 33435844 33435995 -119101264 - RSINE1 SINE B4 -12 153 4 1 840 771 264 130 98 chr5 33435995 33436164 -119101095 - L1MC2 LINE L1 -472 5872 5680 1 840 261 247 37 0 chr5 33436167 33436248 -119101011 - B4 SINE B4 -206 86 3 1 840 518 271 144 6 chr5 33436278 33436445 -119100814 - B3A SINE B2 0 198 9 1 840 984 99 0 0 chr5 33436459 33436601 -119100658 + (TTC)n Simple_repeat Simple_repeat 2 143 0 1 840 743 280 42 75 chr5 33436602 33436731 -119100528 - L1MC2 LINE L1 -669 5675 5560 1 840 992 208 23 42 chr5 33436731 33436947 -119100312 - B3 SINE B2 0 216 5 1 840 743 280 42 75 chr5 33436947 33437176 -119100083 - L1MC2 LINE L1 -785 5559 5329 1 840 459 282 113 0 chr5 33437249 33437426 -119099833 - B3A SINE B2 0 198 2 1 840 375 89 0 0 chr5 33437791 33437847 -119099412 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 840 186 132 57 29 chr5 33437860 33437930 -119099329 + (TCTG)n Simple_repeat Simple_repeat 1 72 0 1 840 263 248 4 0 chr5 33437931 33438002 -119099257 - ID4 SINE ID -50 102 31 1 840 919 282 29 5 chr5 33438694 33439004 -119098255 + L1MB2 LINE L1 5700 6015 -285 1 840 1358 75 5 56 chr5 33439815 33440012 -119097247 - B2_Mm2 SINE B2 -7 188 2 1 840 1084 158 53 19 chr5 33440099 33440305 -119096954 - B3 SINE B2 0 216 4 1 840 226 339 30 38 chr5 33440328 33440460 -119096799 - Charlie4z DNA MER1_type -32 135 5 1 840 244 307 101 16 chr5 33440803 33440932 -119096327 - L2b LINE L2 -16 3359 3220 1 840 318 87 0 0 chr5 33441398 33441444 -119095815 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 840 316 262 12 0 chr5 33441920 33442000 -119095259 + ID2 SINE ID 2 82 -1 1 840 273 146 0 0 chr5 33442096 33442144 -119095115 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 840 288 310 18 55 chr5 33442155 33442319 -119094940 - RSINE1 SINE B4 -4 161 4 1 840 228 216 0 0 chr5 33442443 33442494 -119094765 + CT-rich Low_complexity Low_complexity 2 52 0 1 840 372 310 0 41 chr5 33442501 33442622 -119094637 - Lx8 LINE L1 -115 7358 7243 1 840 441 0 0 0 chr5 33442665 33442714 -119094545 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 840 324 48 0 0 chr5 33442716 33442758 -119094501 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 1 840 435 83 0 0 chr5 33442764 33442824 -119094435 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 840 498 136 0 0 chr5 33442825 33442906 -119094353 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 1 840 2904 258 123 36 chr5 33443011 33443213 -119094046 - Lx8 LINE L1 -291 7182 6971 1 840 360 0 0 0 chr5 33443213 33443253 -119094006 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 840 420 20 0 0 chr5 33443253 33443301 -119093958 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 840 2904 258 123 36 chr5 33443301 33444138 -119093121 - Lx8 LINE L1 -503 6970 6053 1 840 214 303 47 22 chr5 33444621 33444744 -119092515 + MIRb SINE MIR 61 190 -86 1 840 295 318 9 36 chr5 33445845 33445956 -119091303 - PB1D10 SINE Alu -1 116 9 1 840 725 222 169 40 chr5 33446002 33446274 -119090985 - MER2 DNA MER2_type -1 344 38 1 840 321 322 34 34 chr5 33449277 33449425 -119087834 + MER58B DNA MER1_type 13 160 -181 1 840 679 256 81 0 chr5 33449479 33449651 -119087608 - B3 SINE B2 -4 212 27 1 840 29 0 0 0 chr5 33449651 33449680 -119087579 + AT_rich Low_complexity Low_complexity 1 29 0 1 840 1167 70 0 0 chr5 33449680 33449823 -119087436 - B1_Mus2 SINE Alu 0 147 5 1 840 234 111 0 0 chr5 33449823 33449859 -119087400 - B3 SINE B2 -176 40 5 1 840 1055 242 36 0 chr5 33450558 33450781 -119086478 - MERVL_2A-int LTR ERVL -2219 3542 3312 1 840 2151 209 5 23 chr5 33450782 33451222 -119086037 - MERVL_2A-int LTR ERVL -2569 3192 2761 1 840 1155 191 22 4 chr5 33451222 33451453 -119085806 + ORR1D-int LTR MaLR 152 386 -984 1 840 20139 195 41 55 chr5 33451454 33451861 -119085398 - Lx7 LINE L1 -1492 6204 5789 1 840 1402 77 0 35 chr5 33451861 33452062 -119085197 - B2_Mm2 SINE B2 -1 194 1 1 840 20139 150 52 121 chr5 33452062 33452607 -119084652 - Lx7 LINE L1 -88 5792 5249 1 840 860 183 213 0 chr5 33452607 33452776 -119084483 - B3 SINE B2 -10 206 2 1 840 20139 150 52 121 chr5 33452776 33454136 -119083123 - Lx7 LINE L1 -632 5248 3903 1 840 455 219 42 48 chr5 33454136 33454304 -119082955 - RLTR15 LTR ERVK -16 343 177 1 840 20139 150 52 121 chr5 33454304 33454349 -119082910 - Lx7 LINE L1 -632 3902 3857 1 840 1520 62 5 0 chr5 33454349 33454541 -119082718 - B2_Mm1a SINE B2 0 193 1 1 840 20139 152 53 111 chr5 33454541 33457628 -119079631 - Lx7 LINE L1 -2024 3856 907 1 840 1138 88 0 0 chr5 33457666 33457814 -119079445 - B1_Mus1 SINE Alu 0 148 1 1 840 579 122 0 0 chr5 33458247 33458337 -119078922 + (GA)n Simple_repeat Simple_repeat 2 91 0 1 840 224 174 22 0 chr5 33458919 33458965 -119078294 - B4 SINE B4 -245 47 1 1 840 3537 196 134 40 chr5 33459564 33460685 -119076574 - Lx9 LINE L1 -2 7642 6417 1 840 707 179 12 12 chr5 33460682 33460837 -119076422 - L1_Rod LINE L1 -856 5284 5090 1 840 1032 89 0 0 chr5 33460911 33461057 -119076202 + B1_Mus2 SINE Alu 2 147 0 1 840 1557 27 0 0 chr5 33461057 33461318 -119075941 + (GAA)n Simple_repeat Simple_repeat 1 261 0 1 840 896 158 14 0 chr5 33461499 33461645 -119075614 - B1_Mur4 SINE Alu 0 150 3 1 840 416 272 61 0 chr5 33462008 33462122 -119075137 + B3 SINE B2 8 128 -88 1 840 2093 277 62 57 chr5 33462268 33463058 -119074201 + Lx5 LINE L1 6257 7050 0 1 840 466 270 39 22 chr5 33463433 33463615 -119073644 - B3A SINE B2 -13 185 1 1 840 748 143 340 6 chr5 33463958 33464120 -119073139 + B3 SINE B2 1 216 0 1 840 368 130 14 0 chr5 33465036 33465105 -119072154 + (TTCA)n Simple_repeat Simple_repeat 3 72 0 1 840 4592 89 3 6 chr5 33465450 33466072 -119071187 - L1_Mus3 LINE L1 -8 6630 6011 1 840 356 294 41 25 chr5 33466976 33467098 -119070161 + MIRc SINE MIR 83 206 -62 1 840 592 250 32 13 chr5 33467162 33467320 -119069939 + MER5A DNA MER1_type 5 165 -24 1 840 339 269 67 33 chr5 33467320 33467470 -119069789 + MER53 DNA hAT 2 156 -37 1 840 423 215 0 76 chr5 33467548 33467574 -119069685 + MT2B LTR ERVL 144 159 -442 1 840 841 106 45 8 chr5 33467574 33467707 -119069552 + B1_Mus2 SINE Alu 3 140 -7 1 840 266 328 31 0 chr5 33467751 33467879 -119069380 - MIRb SINE MIR -85 183 52 1 840 295 316 44 57 chr5 33468231 33468389 -119068870 - MLT1A LTR MaLR -187 187 32 1 840 712 265 0 47 chr5 33468849 33469019 -119068240 + RSINE1 SINE B4 4 165 0 1 840 744 186 0 0 chr5 33469020 33469197 -119068062 + CT-rich Low_complexity Low_complexity 2 178 0 1 840 234 0 0 0 chr5 33469197 33469223 -119068036 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 840 1114 56 0 7 chr5 33470298 33470441 -119066818 + B1_Mus1 SINE Alu 5 146 -2 1 840 249 33 0 0 chr5 33470862 33470892 -119066367 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1 840 499 149 185 7 chr5 33471471 33471606 -119065653 - Lx9 LINE L1 -1 7643 7485 1 840 832 274 140 0 chr5 33472499 33472827 -119064432 - ORR1D1 LTR MaLR 0 374 1 1 840 1210 100 25 45 chr5 33472952 33473151 -119064108 - B2_Mm2 SINE B2 0 195 1 1 840 1335 72 0 0 chr5 33473151 33473331 -119063928 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 840 760 89 20 7 chr5 33473331 33473478 -119063781 - RMER17B LTR ERVK -498 460 312 1 840 24 32 0 0 chr5 33473524 33473555 -119063704 + AT_rich Low_complexity Low_complexity 1 31 0 1 840 627 182 0 9 chr5 33473676 33473787 -119063472 - B3 SINE B2 -95 121 12 1 840 249 108 0 0 chr5 33474553 33474590 -119062669 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 1 840 691 173 5 38 chr5 33475410 33475596 -119061663 + CT-rich Low_complexity Low_complexity 1 180 0 1 840 244 229 0 24 chr5 33475616 33475701 -119061558 + CT-rich Low_complexity Low_complexity 3 85 0 1 840 375 23 0 0 chr5 33475893 33475937 -119061322 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 1 840 285 29 0 0 chr5 33476821 33476855 -119060404 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 840 384 22 0 0 chr5 33477109 33477154 -119060105 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 840 829 207 212 28 chr5 33477666 33477949 -119059310 + L1MA8 LINE L1 5627 5961 -330 1 840 22 35 0 0 chr5 33477950 33477979 -119059280 + AT_rich Low_complexity Low_complexity 1 29 0 1 840 309 235 0 0 chr5 33478015 33478100 -119059159 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 840 441 103 0 0 chr5 33478764 33478832 -119058427 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 840 812 167 8 0 chr5 33478864 33478996 -119058263 + B1_Mur2 SINE Alu 2 134 -15 1 840 256 268 2 0 chr5 33479356 33479419 -119057840 - ID4_ SINE ID -6 77 14 1 840 334 283 23 62 chr5 33479432 33479560 -119057699 - PB1 SINE Alu -4 123 1 1 840 254 300 0 36 chr5 33479671 33479754 -119057505 + CT-rich Low_complexity Low_complexity 3 82 0 1 840 633 14 0 0 chr5 33479765 33479839 -119057420 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 840 386 158 79 0 chr5 33480020 33480096 -119057163 - Lx7 LINE L1 -1321 6375 6294 1 840 8367 150 73 10 chr5 33480095 33481485 -119055774 - L1_Mur3 LINE L1 -1356 4524 3058 1 840 1095 134 0 0 chr5 33481485 33481664 -119055595 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 840 8367 199 67 65 chr5 33481664 33481941 -119055318 - L1_Mur3 LINE L1 -2823 3057 2766 1 840 870 143 0 0 chr5 33481941 33482074 -119055185 - B1_Mus2 SINE Alu -5 142 10 1 840 500 255 0 95 chr5 33482074 33482110 -119055149 - ID_B1 SINE B4 -5 219 67 1 840 8367 199 67 65 chr5 33482110 33482444 -119054815 - L1_Mur3 LINE L1 -2823 2765 2412 1 840 2646 203 100 16 chr5 33482420 33483062 -119054197 - L1_Rod LINE L1 -6464 708 13 1 840 302 299 66 28 chr5 33483347 33483485 -119053774 + Lx9 LINE L1 7225 7370 -274 1 840 204 125 0 0 chr5 33483485 33483517 -119053742 + (ATG)n Simple_repeat Simple_repeat 3 34 0 1 840 302 299 66 28 chr5 33483517 33483591 -119053668 + Lx9 LINE L1 7371 7445 -199 1 840 290 194 15 0 chr5 33485356 33485423 -119051836 + CT-rich Low_complexity Low_complexity 2 69 0 1 840 333 0 0 0 chr5 33485685 33485722 -119051537 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 840 1090 80 0 0 chr5 33486981 33487118 -119050141 + B1_Mus1 SINE Alu 2 138 -10 1 840 234 0 0 0 chr5 33487582 33487608 -119049651 + (A)n Simple_repeat Simple_repeat 1 26 0 1 840 229 281 75 35 chr5 33488318 33488491 -119048768 + Charlie18a DNA MER1_type 141 320 -22 1 840 23 68 0 0 chr5 33489912 33489956 -119047303 + AT_rich Low_complexity Low_complexity 1 44 0 1 840 906 36 0 0 chr5 33490060 33490170 -119047089 + (TCTCCC)n Simple_repeat Simple_repeat 5 114 0 1 840 418 280 145 0 chr5 33490697 33490904 -119046355 + MER2 DNA MER2_type 100 336 -9 1 840 201 39 0 0 chr5 33491241 33491267 -119045992 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 840 234 280 157 8 chr5 33491996 33492152 -119045107 + L1M2 LINE L1 5740 5921 -370 1 840 414 0 0 0 chr5 33492161 33492207 -119045052 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 840 516 288 15 0 chr5 33492282 33492414 -119044845 - RSINE1 SINE B4 -29 136 3 1 840 328 194 51 0 chr5 33492579 33492677 -119044582 - Lx9 LINE L1 -1 7643 7541 1 840 228 35 0 0 chr5 33492677 33492706 -119044553 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 840 1219 240 92 9 chr5 33492716 33493031 -119044228 - Lx9 LINE L1 -206 7438 7098 1 840 448 299 226 0 chr5 33493055 33493232 -119044027 - B4A SINE B4 -73 219 3 1 840 558 47 35 0 chr5 33493248 33493334 -119043925 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 1 840 330 218 60 60 chr5 33493337 33493454 -119043805 - PB1D10 SINE Alu 0 117 1 1 840 1486 158 182 91 chr5 33494328 33494746 -119042513 - MT2A LTR ERVL -73 460 5 1 840 360 247 0 12 chr5 33495517 33495599 -119041660 - ID4_ SINE ID -1 82 2 1 840 280 294 15 0 chr5 33495934 33496002 -119041257 - ID4_ SINE ID -9 74 6 1 840 199 388 81 16 chr5 33496683 33496806 -119040453 - MIRb SINE MIR -112 156 26 1 840 438 20 0 0 chr5 33496993 33497044 -119040215 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 840 306 252 39 10 chr5 33497054 33497158 -119040101 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 1 840 545 120 11 0 chr5 33499663 33499755 -119037504 + (GGA)n Simple_repeat Simple_repeat 2 94 0 1 840 235 86 29 0 chr5 33499796 33499831 -119037428 + B1_Mm SINE Alu 69 104 -43 1 840 687 196 41 6 chr5 33499831 33500000 -119037259 - L1_Rod LINE L1 -6762 410 236 1 840 347 294 49 34 chr5 33500000 33500204 -119037055 - L1_Rod LINE L1 -6937 235 29 1 840 651 262 34 25 chr5 33500191 33500430 -119036829 - L1_Rod LINE L1 -6919 253 13 1 840 224 232 0 0 chr5 33500876 33500932 -119036327 + (CAT)n Simple_repeat Simple_repeat 1 56 0 2 840 695 286 112 23 chr5 33501205 33501509 -119035750 - Lx8 LINE L1 -238 7235 6905 3 840 229 296 0 66 chr5 33502285 33502361 -119034898 - ID4 SINE ID 0 83 13 4 840 210 261 0 0 chr5 33502724 33502770 -119034489 + B1F2 SINE Alu 1 46 -103 5 840 185 35 0 65 chr5 33504441 33504472 -119032787 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 6 840 213 39 0 0 chr5 33504874 33504900 -119032359 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 7 840 378 0 0 0 chr5 33505562 33505604 -119031655 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 840 278 346 135 0 chr5 33505627 33505731 -119031528 + PB1 SINE Alu 1 118 -9 9 840 1334 275 54 5 chr5 33506547 33506952 -119030307 + Lx8 LINE L1 6799 7223 -250 1 840 705 197 0 0 chr5 33506976 33507204 -119030055 + (CA)n Simple_repeat Simple_repeat 1 228 0 1 840 393 235 12 0 chr5 33507339 33507420 -119029839 + B1F SINE Alu 67 148 -1 1 840 2637 116 5 0 chr5 33507778 33508156 -119029103 - ORR1B1 LTR MaLR -10 384 5 1 840 585 283 94 59 chr5 33508603 33508806 -119028453 + B3 SINE B2 6 215 -1 1 840 333 0 0 0 chr5 33509110 33509147 -119028112 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 840 523 159 150 0 chr5 33509210 33509323 -119027936 + ID_B1 SINE B4 83 212 -12 1 840 621 264 7 7 chr5 33509339 33509480 -119027779 + RSINE1 SINE B4 11 151 -14 1 840 533 220 36 42 chr5 33509856 33510022 -119027237 + L1MC3 LINE L1 6762 6926 -859 1 840 659 260 50 31 chr5 33510061 33510220 -119027039 + RSINE1 SINE B4 4 165 0 1 840 300 200 0 0 chr5 33510225 33510300 -119026959 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 840 362 290 108 13 chr5 33510302 33510459 -119026800 + L1MC3 LINE L1 6935 7106 -679 1 840 1805 220 46 20 chr5 33510478 33510873 -119026386 + MTD LTR MaLR 8 412 -7 2 840 1253 296 82 38 chr5 33510876 33511502 -119025757 + L1MC3 LINE L1 7132 7784 -1 1 840 564 264 21 0 chr5 33511537 33511677 -119025582 - B1_Mur1 SINE Alu -2 147 5 2 840 345 47 0 0 chr5 33511737 33511780 -119025479 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 840 699 309 81 8 chr5 33511798 33512046 -119025213 - B4A SINE B4 -26 266 1 2 840 240 265 0 93 chr5 33512057 33512132 -119025127 - PB1D10 SINE Alu -8 109 42 2 840 524 309 214 55 chr5 33512136 33512302 -119024957 - Charlie25 DNA MER1_type -1146 1378 1197 2 840 422 298 131 16 chr5 33512302 33512493 -119024766 + B3 SINE B2 1 213 -3 2 840 524 309 214 55 chr5 33512493 33512747 -119024512 - Charlie25 DNA MER1_type -1328 1196 891 2 840 1775 126 0 35 chr5 33512756 33513043 -119024216 + L1Md_F2 LINE L1 6306 6582 0 2 840 780 223 20 13 chr5 33513071 33513221 -119024038 + RSINE1 SINE B4 15 165 0 2 840 294 335 82 23 chr5 33513221 33513232 -119024027 + B3A SINE B2 78 183 -15 3 840 215 234 0 0 chr5 33513233 33513280 -119023979 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 840 373 245 160 20 chr5 33513412 33513512 -119023747 - PB1D10 SINE Alu -3 114 1 3 840 363 257 34 50 chr5 33513515 33513634 -119023625 - PB1D10 SINE Alu 0 117 1 3 840 375 344 50 46 chr5 33513897 33514135 -119023124 - Charlie25 DNA MER1_type -2101 423 185 2 840 312 258 0 43 chr5 33514159 33514228 -119023031 + B1F2 SINE Alu 1 66 -83 3 840 286 221 175 38 chr5 33514228 33514239 -119023020 + ID_B1 SINE B4 82 172 -52 3 840 408 284 0 0 chr5 33514261 33514342 -119022917 + MER3 DNA MER1_type 40 120 -89 3 840 653 185 9 0 chr5 33514349 33514457 -119022802 - B1_Mur1 SINE Alu 0 149 41 3 840 535 271 8 15 chr5 33514428 33514559 -119022700 + B3 SINE B2 86 215 -1 3 840 277 324 74 0 chr5 33514819 33514927 -119022332 - PB1D10 SINE Alu -1 116 1 3 840 15266 139 224 4 chr5 33514994 33519953 -119017306 + Lx LINE L1 561 6647 -7 4 840 21 0 0 0 chr5 33519953 33519974 -119017285 + AT_rich Low_complexity Low_complexity 1 21 0 4 840 329 183 0 55 chr5 33520108 33520235 -119017024 + (CATA)n Simple_repeat Simple_repeat 3 122 0 4 840 446 324 6 0 chr5 33520244 33520344 -119016915 + (CATATA)n Simple_repeat Simple_repeat 2 101 0 4 840 3264 53 2 2 chr5 33520344 33520740 -119016519 + MTA_Mm LTR MaLR 1 396 0 4 840 446 324 6 0 chr5 33520740 33520812 -119016447 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 4 840 332 308 25 12 chr5 33520832 33520993 -119016266 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 4 840 4666 120 98 86 chr5 33520995 33521131 -119016128 - RMER19B LTR ERVK 0 902 764 4 840 1472 62 16 5 chr5 33521131 33521324 -119015935 + B2_Mm2 SINE B2 1 195 0 4 840 4666 120 98 86 chr5 33521324 33522079 -119015180 - RMER19B LTR ERVK -139 763 1 4 840 400 271 26 26 chr5 33522080 33522235 -119015024 + (CATATA)n Simple_repeat Simple_repeat 6 160 0 4 840 250 266 0 20 chr5 33522246 33522392 -119014867 + (CATATA)n Simple_repeat Simple_repeat 4 146 0 4 840 4832 147 80 7 chr5 33522470 33523298 -119013961 + RMER19B LTR ERVK 3 890 -12 4 840 491 281 83 8 chr5 33523317 33523502 -119013757 + B3A SINE B2 14 210 -6 5 840 226 301 13 76 chr5 33524047 33524126 -119013133 + MTE2b LTR MaLR 64 137 -242 5 840 1850 204 25 6 chr5 33524064 33524418 -119012841 + MT2A LTR ERVL 76 436 -97 5 840 249 108 0 0 chr5 33525173 33525210 -119012049 - B3 SINE B2 -175 41 5 5 840 212 183 345 24 chr5 33525614 33525698 -119011561 - MIRb SINE MIR -108 160 50 5 840 446 72 0 45 chr5 33526343 33526431 -119010828 + (TCCC)n Simple_repeat Simple_repeat 2 85 0 5 840 4533 63 3 0 chr5 33526514 33527104 -119010155 + L1_Mm LINE L1 3617 4208 -1675 5 840 2904 54 54 0 chr5 33527106 33527476 -119009783 + RLTR10 LTR ERVK 1 390 0 5 840 1993 99 72 71 chr5 33527476 33527933 -119009326 + MMERVK10C-int LTR ERVK 1 426 -7155 5 840 3581 34 17 107 chr5 33527939 33528461 -119008798 + IAPLTR2_Mm LTR ERVK 1 475 0 5 840 808 153 7 0 chr5 33528560 33528697 -119008562 + MMERVK10C-int LTR ERVK 708 845 -6736 5 840 359 218 112 4 chr5 33528698 33528832 -119008427 + MMERVK10C-int LTR ERVK 335 503 -4903 5 840 304 139 0 0 chr5 33528953 33528996 -119008263 + MMERVK10C-int LTR ERVK 950 992 -995 5 840 649 299 28 25 chr5 33529161 33529446 -119007813 + MMERVK10C-int LTR ERVK 1309 1594 -5987 5 840 8567 28 15 3 chr5 33529528 33530513 -119006746 + RLTR10-int LTR ERVK 990 1986 -1 6 840 2867 67 51 0 chr5 33530513 33530884 -119006375 + RLTR10 LTR ERVK 1 390 0 6 840 13285 64 5 2 chr5 33530886 33533113 -119004146 + L1Md_F2 LINE L1 4207 6439 -143 6 840 6845 47 2 2 chr5 33533141 33533970 -119003289 - L1Md_F2 LINE L1 0 6582 5754 6 840 778 143 28 14 chr5 33533958 33534125 -119003134 + L1Md_F2 LINE L1 6420 6582 0 6 840 469 304 57 24 chr5 33534293 33534502 -119002757 - L3b LINE CR1 -257 225 10 6 840 316 337 213 20 chr5 33534856 33535110 -119002149 + L1MC LINE L1 5355 5657 -2225 6 840 328 259 34 0 chr5 33535277 33535365 -119001894 - PB1D10 SINE Alu -20 100 4 6 840 342 0 0 0 chr5 33535466 33535504 -119001755 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 840 356 315 73 98 chr5 33535509 33535713 -119001546 + L1MCa LINE L1 67 265 -6243 6 840 435 279 154 67 chr5 33535758 33536387 -119000872 + L1MCa LINE L1 874 1557 -4951 6 840 807 67 0 0 chr5 33536726 33536845 -119000414 + (TC)n Simple_repeat Simple_repeat 2 120 0 6 840 495 276 0 0 chr5 33536845 33536943 -119000316 - B1_Mur1 SINE Alu -12 137 40 6 840 24 32 0 0 chr5 33537186 33537217 -119000042 + AT_rich Low_complexity Low_complexity 1 31 0 7 840 194 341 81 8 chr5 33538104 33538228 -118999031 - MIR SINE MIR -120 142 10 7 840 1138 66 31 5 chr5 33538493 33538877 -118998382 + (TCTA)n Simple_repeat Simple_repeat 1 394 0 7 840 617 197 40 16 chr5 33538882 33539006 -118998253 - RSINE1 SINE B4 -35 130 4 7 840 619 264 7 39 chr5 33539550 33539704 -118997555 + B1F SINE Alu 1 149 0 7 840 533 266 132 73 chr5 33539709 33539981 -118997278 + B4 SINE B4 3 290 -2 7 840 194 372 10 31 chr5 33540300 33540397 -118996862 - MIRb SINE MIR -20 248 154 7 840 281 272 151 40 chr5 33540606 33540805 -118996454 + MIR SINE MIR 16 236 -26 7 840 23 0 0 0 chr5 33540840 33540863 -118996396 + AT_rich Low_complexity Low_complexity 1 23 0 7 840 186 133 0 0 chr5 33541166 33541196 -118996063 + (TTG)n Simple_repeat Simple_repeat 2 31 0 7 840 218 320 56 37 chr5 33541307 33541414 -118995845 - MIRb SINE MIR -117 151 40 7 840 1243 14 0 0 chr5 33541684 33541822 -118995437 + B1_Mus2 SINE Alu 2 139 -8 8 840 216 0 0 0 chr5 33541822 33541846 -118995413 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 8 840 192 77 0 0 chr5 33541879 33541905 -118995354 + (A)n Simple_repeat Simple_repeat 1 26 0 8 840 245 283 0 0 chr5 33541916 33541976 -118995283 + B1_Mus1 SINE Alu 1 60 -88 8 840 185 189 111 19 chr5 33541992 33542046 -118995213 + L3 LINE CR1 3348 3406 -1083 8 840 3147 60 8 2 chr5 33542106 33542504 -118994755 - MTB LTR MaLR 0 400 1 8 840 573 115 0 0 chr5 33542666 33542762 -118994497 + (GGGA)n Simple_repeat Simple_repeat 4 99 0 8 840 538 264 113 19 chr5 33543058 33543270 -118993989 + L1MDb LINE L1 1031 1262 -5278 8 840 860 151 13 40 chr5 33543297 33543449 -118993810 + B1_Mur2 SINE Alu 2 149 0 8 840 754 177 256 64 chr5 33543461 33543565 -118993694 + Lx6 LINE L1 6802 6896 -800 8 840 414 0 0 0 chr5 33543565 33543611 -118993648 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 840 1930 208 106 20 chr5 33543611 33544113 -118993146 + Lx6 LINE L1 6897 7460 0 8 840 501 220 60 38 chr5 33544262 33544446 -118992813 + L1MDb LINE L1 1474 1661 -4972 8 840 250 62 0 0 chr5 33544707 33544739 -118992520 + MT2B2 LTR ERVL 167 198 -386 9 840 403 234 75 0 chr5 33544736 33544830 -118992429 - B1_Mur1 SINE Alu -16 133 33 9 840 303 297 35 26 chr5 33544840 33544954 -118992305 + L1MDb LINE L1 2113 2227 -4406 8 840 301 277 86 16 chr5 33545007 33545194 -118992065 + L1MDb LINE L1 2356 2555 -4078 8 840 238 222 79 0 chr5 33545498 33545561 -118991698 + L1MDb LINE L1 2936 3003 -3534 8 840 207 273 0 18 chr5 33546132 33546188 -118991071 + L2a LINE L2 3367 3421 -5 9 840 723 124 9 0 chr5 33546799 33546904 -118990355 + B2_Mm1t SINE B2 74 179 -14 9 840 372 219 7 34 chr5 33546936 33547027 -118990232 + B2_Mm2 SINE B2 47 134 -82 9 840 235 136 68 0 chr5 33547027 33547071 -118990188 - L1M4 LINE L1 -523 5661 5615 9 840 417 236 81 39 chr5 33547558 33547749 -118989510 + B3A SINE B2 1 193 0 9 840 1244 34 7 0 chr5 33548687 33548834 -118988425 + B1_Mus1 SINE Alu 1 148 0 9 840 432 323 128 53 chr5 33549432 33549713 -118987546 - L1MEg LINE L1 -5183 901 600 9 840 1362 86 21 16 chr5 33550680 33550870 -118986389 + B2_Mm2 SINE B2 1 191 -4 1 840 233 0 62 0 chr5 33552155 33552187 -118985072 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 840 570 196 49 0 chr5 33552189 33552291 -118984968 - B1_Mur4 SINE Alu -10 140 34 1 840 323 227 130 43 chr5 33552219 33552311 -118984948 - MT2B LTR ERVL -344 257 158 1 840 1130 113 0 35 chr5 33553574 33553748 -118983511 + ORR1B1 LTR MaLR 227 394 0 1 840 1905 112 220 0 chr5 33553866 33554189 -118983070 - ORR1B1 LTR MaLR 0 394 1 1 841 459 0 0 0 chr5 33554521 33554572 -118982687 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 841 1916 120 9 76 chr5 33554572 33554915 -118982344 - ORR1A4 LTR MaLR -9 320 1 1 841 405 0 0 0 chr5 33554915 33554960 -118982299 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 841 363 258 0 0 chr5 33554961 33555027 -118982232 - RSINE1 SINE B4 -99 66 1 1 841 216 67 0 0 chr5 33555977 33556007 -118981252 + (CCTG)n Simple_repeat Simple_repeat 2 31 0 1 841 324 228 192 29 chr5 33556010 33556114 -118981145 - B1F SINE Alu 0 149 29 1 841 246 62 0 0 chr5 33557879 33557911 -118979348 + (CAGC)n Simple_repeat Simple_repeat 4 35 0 1 841 212 255 20 0 chr5 33560898 33560949 -118976310 + CT-rich Low_complexity Low_complexity 5 56 0 1 841 297 0 0 0 chr5 33561093 33561126 -118976133 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 841 218 244 0 0 chr5 33563564 33563609 -118973650 + CT-rich Low_complexity Low_complexity 1 45 0 1 841 534 118 0 0 chr5 33564256 33564358 -118972901 + (GGGAGA)n Simple_repeat Simple_repeat 3 104 0 1 841 533 284 22 0 chr5 33564611 33564745 -118972514 + B1_Mur1 SINE Alu 13 149 0 1 841 239 164 0 52 chr5 33564777 33564835 -118972424 + L1M4 LINE L1 466 520 -6384 1 841 1936 305 92 34 chr5 33565052 33565767 -118971492 + L1M4 LINE L1 807 1573 -5331 1 841 342 306 44 22 chr5 33565767 33565904 -118971355 + B1F2 SINE Alu 1 140 -9 1 841 1936 305 92 34 chr5 33565904 33566234 -118971025 + L1M4 LINE L1 1574 1913 -4991 1 841 2154 216 15 106 chr5 33566246 33566831 -118970428 - RMER5 LTR ERV1 0 534 3 1 841 319 289 149 8 chr5 33566872 33567120 -118970139 + L1M4 LINE L1 1918 2200 -5134 1 841 712 286 162 0 chr5 33567332 33567640 -118969619 + L1M4c LINE L1 29 386 -5998 1 841 359 289 193 50 chr5 33567722 33568002 -118969257 + ORR1E LTR MaLR 39 358 -1 1 841 347 292 20 53 chr5 33568010 33568162 -118969097 + L1M4c LINE L1 445 591 -5793 1 841 596 198 214 6 chr5 33568228 33568401 -118968858 - RMER21A LTR ERV1 -265 682 474 1 841 646 305 123 3 chr5 33568444 33568617 -118968642 + L1M4c LINE L1 604 795 -5589 1 841 279 79 0 0 chr5 33568617 33568655 -118968604 + (CAG)n Simple_repeat Simple_repeat 1 38 0 1 841 646 305 123 3 chr5 33568655 33568839 -118968420 + L1M4c LINE L1 796 1003 -5381 1 841 661 352 104 37 chr5 33568870 33569416 -118967843 + RMER15-int LTR ERVL 1622 2204 -2795 1 841 261 267 147 0 chr5 33569434 33569509 -118967750 + RMER15-int LTR ERVL 2293 2378 -2621 1 841 1700 291 59 4 chr5 33569571 33570079 -118967180 + RMER15-int LTR ERVL 4167 4702 -297 1 841 818 233 108 21 chr5 33570092 33570417 -118966842 + L1M4c LINE L1 4494 4846 -1536 1 841 364 269 21 31 chr5 33570417 33570513 -118966746 + PB1D10 SINE Alu 10 104 -13 1 841 677 155 0 8 chr5 33570537 33570667 -118966592 + CT-rich Low_complexity Low_complexity 3 131 0 1 841 508 233 8 49 chr5 33572026 33572148 -118965111 - PB1D9 SINE Alu -1 119 3 1 841 299 25 25 0 chr5 33572476 33572516 -118964743 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 841 246 128 0 0 chr5 33572577 33572616 -118964643 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 1 841 188 297 53 13 chr5 33572664 33572739 -118964520 + MIR SINE MIR 58 135 -127 1 841 183 100 0 0 chr5 33573290 33573320 -118963939 + (CAGA)n Simple_repeat Simple_repeat 4 33 0 1 841 261 203 51 0 chr5 33573638 33573697 -118963562 + B1_Mur3 SINE Alu 2 63 -86 1 841 262 361 136 0 chr5 33574489 33574658 -118962601 + ORR1D2 LTR MaLR 1 192 -178 1 841 29 70 0 0 chr5 33574938 33574995 -118962264 + AT_rich Low_complexity Low_complexity 1 57 0 1 841 385 284 0 73 chr5 33575043 33575153 -118962106 + RSINE1 SINE B4 11 112 -53 1 841 478 217 148 0 chr5 33575190 33575305 -118961954 + B1_Mur1 SINE Alu 17 148 -1 1 841 1309 209 171 3 chr5 33575389 33575710 -118961549 - MTD LTR MaLR -21 398 24 1 841 634 246 60 16 chr5 33576457 33576639 -118960620 + B3A SINE B2 2 191 -7 1 841 715 294 1 27 chr5 33576659 33576877 -118960382 + B3A SINE B2 4 216 0 1 841 1652 162 193 3 chr5 33578423 33578775 -118958484 + MTD LTR MaLR 1 419 0 1 841 334 351 11 83 chr5 33578863 33579043 -118958216 + RMER15 LTR ERVL 403 569 -6 1 841 324 0 0 0 chr5 33579738 33579774 -118957485 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 841 320 24 0 0 chr5 33579814 33579856 -118957403 + RLTR10B LTR ERVK 1 42 -250 1 841 1904 39 3 121 chr5 33579864 33580186 -118957073 + RLTR10B LTR ERVK 9 292 0 1 841 1876 147 33 0 chr5 33582302 33582608 -118954651 + MTC LTR MaLR 106 421 0 1 841 4457 152 115 125 chr5 33582608 33583879 -118953380 + MTC-int LTR MaLR 1 1258 0 1 841 2521 134 5 24 chr5 33583879 33584300 -118952959 + MTC LTR MaLR 1 413 -8 1 841 1041 43 7 54 chr5 33586406 33586555 -118950704 + B1_Mus2 SINE Alu 1 142 -5 1 841 656 295 100 11 chr5 33586566 33586827 -118950432 + B4A SINE B4 2 285 -7 1 841 277 322 8 24 chr5 33586832 33586956 -118950303 + (CATATA)n Simple_repeat Simple_repeat 5 126 0 1 841 1566 195 111 26 chr5 33587485 33587851 -118949408 + MTD LTR MaLR 1 401 -18 1 841 234 0 0 0 chr5 33587851 33587877 -118949382 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 841 1566 195 111 26 chr5 33587877 33587889 -118949370 + MTD LTR MaLR 402 411 -8 1 841 2602 60 0 6 chr5 33587897 33588252 -118949007 - L1_Mm LINE L1 -1623 4260 3908 1 841 206 219 0 0 chr5 33589273 33589314 -118947945 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 841 763 269 94 12 chr5 33589415 33589671 -118947588 - B4A SINE B4 -13 279 3 1 841 762 249 20 55 chr5 33594120 33594320 -118942939 + B3A SINE B2 6 198 0 1 841 342 183 25 112 chr5 33595988 33596068 -118941191 + B1_Mur3 SINE Alu 2 74 -75 1 841 673 153 189 40 chr5 33596127 33596374 -118940885 + ORR1D1 LTR MaLR 3 338 -8 1 841 2540 157 25 25 chr5 33596378 33596854 -118940405 + ORR1D1-int LTR MaLR 1 476 -1033 1 841 2157 213 14 137 chr5 33596873 33597537 -118939722 + RMER19C LTR ERVK 30 611 0 1 841 1877 206 63 18 chr5 33597537 33598005 -118939254 + ORR1D1-int LTR MaLR 502 991 -518 1 841 868 105 140 0 chr5 33598265 33598408 -118938851 + ORR1D1 LTR MaLR 1 163 -211 1 841 255 203 0 98 chr5 33598435 33598517 -118938742 + (TCTCTG)n Simple_repeat Simple_repeat 3 76 0 1 841 958 163 45 20 chr5 33598523 33598723 -118938536 + ORR1D1 LTR MaLR 166 370 -4 1 841 294 196 336 0 chr5 33604287 33604394 -118932865 + RMER4B LTR ERVK 17 159 -307 1 841 384 228 17 180 chr5 33604485 33604614 -118932645 + RMER4B LTR ERVK 335 533 -78 1 841 1364 60 16 0 chr5 33605877 33606059 -118931200 - B2_Mm1t SINE B2 -8 185 1 1 841 235 248 102 28 chr5 33608028 33608136 -118929123 - L1MD LINE L1 -607 5752 5637 1 841 298 280 13 0 chr5 33610292 33610367 -118926892 + ID2 SINE ID 5 80 -3 1 841 261 57 0 0 chr5 33613585 33613620 -118923639 + (CCAA)n Simple_repeat Simple_repeat 1 35 0 1 841 288 0 0 0 chr5 33616331 33616363 -118920896 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 841 37 39 0 0 chr5 33617348 33617399 -118919860 + GC_rich Low_complexity Low_complexity 1 51 0 1 841 24 111 0 0 chr5 33617561 33617669 -118919590 + GC_rich Low_complexity Low_complexity 1 108 0 1 841 24 0 0 0 chr5 33618163 33618187 -118919072 + AT_rich Low_complexity Low_complexity 1 24 0 1 841 290 0 59 20 chr5 33618187 33618238 -118919021 + (TAA)n Simple_repeat Simple_repeat 2 54 0 1 841 1470 59 10 10 chr5 33618776 33618980 -118918279 + L1Md_A LINE L1 6379 6582 0 1 841 1795 206 65 6 chr5 33620620 33620961 -118916298 + ORR1D1 LTR MaLR 5 365 -9 1 841 581 257 40 122 chr5 33621057 33621409 -118915850 - MTEa LTR MaLR 0 379 39 1 841 226 301 125 10 chr5 33622260 33622364 -118914895 + MTEb LTR MaLR 250 365 -14 1 841 1113 73 0 0 chr5 33622441 33622578 -118914681 + B1_Mus2 SINE Alu 1 137 -10 1 841 343 0 43 0 chr5 33622578 33622625 -118914634 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 841 790 191 14 0 chr5 33622866 33623007 -118914252 + B1_Mur3 SINE Alu 1 143 -6 1 841 198 0 0 0 chr5 33623012 33623034 -118914225 + (CATA)n Simple_repeat Simple_repeat 2 23 0 1 841 389 358 31 12 chr5 33623333 33623494 -118913765 - L1M2 LINE L1 -1610 4533 4370 1 841 305 236 0 43 chr5 33623495 33623588 -118913671 - L1M2 LINE L1 -1961 4182 4094 1 841 225 341 61 42 chr5 33623655 33623822 -118913437 - MIRc SINE MIR -67 201 24 1 841 495 0 0 0 chr5 33623930 33623985 -118913274 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 841 321 26 0 0 chr5 33623985 33624023 -118913236 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 841 1624 36 0 10 chr5 33624866 33625060 -118912199 + B2_Mm1a SINE B2 2 193 0 1 841 242 232 130 0 chr5 33625241 33625310 -118911949 - BC1_Mm scRNA scRNA -69 83 6 1 841 687 172 17 8 chr5 33625398 33625515 -118911744 - PB1D9 SINE Alu -2 118 1 1 841 726 156 77 56 chr5 33625518 33625661 -118911598 - B1_Mur1 SINE Alu -1 148 3 1 841 708 255 79 15 chr5 33625673 33625876 -118911383 - B3 SINE B2 0 216 1 1 841 363 252 52 43 chr5 33626298 33626414 -118910845 - PB1D10 SINE Alu 0 117 1 1 841 641 275 63 11 chr5 33627610 33627801 -118909458 + B3 SINE B2 9 209 -7 1 841 774 185 7 7 chr5 33627801 33627948 -118909311 + B1_Mur3 SINE Alu 1 147 -2 1 841 238 291 0 0 chr5 33628060 33628139 -118909120 + L1MEf LINE L1 1722 1800 -5196 1 841 371 261 304 0 chr5 33628213 33628328 -118908931 + RSINE1 SINE B4 16 165 0 1 841 278 193 35 0 chr5 33628369 33628426 -118908833 + PB1D9 SINE Alu 1 59 -61 1 841 213 121 0 0 chr5 33628426 33628459 -118908800 + (GGA)n Simple_repeat Simple_repeat 1 33 0 1 841 2459 123 51 137 chr5 33628591 33629101 -118908158 - RMER4A LTR ERVK 0 466 1 1 841 381 271 30 83 chr5 33629121 33629290 -118907969 + RSINE1 SINE B4 6 165 0 1 841 345 262 34 93 chr5 33629380 33629498 -118907761 + RSINE1 SINE B4 44 154 -11 1 841 320 252 85 93 chr5 33629565 33629683 -118907576 + RSINE1 SINE B4 44 160 -5 1 841 306 263 75 89 chr5 33629685 33629898 -118907361 + L1MEf LINE L1 1939 2262 -4840 1 841 311 308 16 55 chr5 33629933 33630060 -118907199 + RSINE1 SINE B4 8 129 -36 1 841 3327 126 148 19 chr5 33630105 33630832 -118906427 + RLTR13D3 LTR ERVK 1 1114 0 1 841 2315 192 42 7 chr5 33630881 33631070 -118906189 + RLTR20D LTR ERVK 2 190 -378 2 841 198 0 0 0 chr5 33631070 33631092 -118906167 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 841 2315 192 31 53 chr5 33631092 33631518 -118905741 + RLTR20D LTR ERVK 191 568 0 2 841 189 0 0 0 chr5 33631745 33631766 -118905493 + (A)n Simple_repeat Simple_repeat 1 21 0 2 841 3668 155 74 76 chr5 33632350 33633130 -118904129 - RMER21A LTR ERV1 0 947 169 2 841 315 0 0 0 chr5 33633154 33633189 -118904070 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 841 462 36 0 0 chr5 33633197 33633253 -118904006 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 841 216 0 0 0 chr5 33633480 33633504 -118903755 + (TGGA)n Simple_repeat Simple_repeat 2 25 0 2 841 853 216 48 3 chr5 33633852 33634045 -118903214 - B3A SINE B2 -13 203 1 2 841 1257 28 14 0 chr5 33634337 33634482 -118902777 + B1_Mus1 SINE Alu 2 148 0 2 841 233 40 100 0 chr5 33634482 33634532 -118902727 + (CAAA)n Simple_repeat Simple_repeat 4 58 0 2 841 948 166 166 0 chr5 33634637 33634830 -118902429 - URR1B DNA MER1_type 0 225 1 2 841 1876 121 6 135 chr5 33635434 33635696 -118901563 + RMER17C LTR ERVK 1 210 -200 2 841 351 0 0 0 chr5 33635696 33635735 -118901524 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 841 1876 121 6 135 chr5 33635735 33635939 -118901320 + RMER17C LTR ERVK 211 406 -4 2 841 1056 66 73 0 chr5 33637197 33637334 -118899925 + B1_Mus1 SINE Alu 2 148 0 2 841 547 227 125 0 chr5 33638108 33638236 -118899023 + MTEa LTR MaLR 1 144 -235 2 841 815 183 217 0 chr5 33638380 33638555 -118898704 + B3 SINE B2 4 216 0 2 841 1354 163 344 15 chr5 33638905 33639364 -118897895 + RMER19C LTR ERVK 1 611 0 2 841 568 208 272 6 chr5 33639938 33640107 -118897152 + B3 SINE B2 1 214 -2 2 841 1229 185 0 36 chr5 33640131 33640350 -118896909 + B3 SINE B2 2 212 -4 2 841 26 30 0 0 chr5 33640353 33640386 -118896873 + AT_rich Low_complexity Low_complexity 1 33 0 2 841 501 150 367 20 chr5 33640505 33640655 -118896604 + B3 SINE B2 3 204 -12 2 841 260 259 35 0 chr5 33640683 33640741 -118896518 + MLT1F1 LTR MaLR 50 109 -460 2 841 580 269 70 78 chr5 33640761 33641120 -118896139 + RLTR15 LTR ERVK 1 356 -3 2 841 1161 88 0 0 chr5 33641124 33641271 -118895988 - B1_Mus2 SINE Alu 0 147 1 2 841 25 0 0 0 chr5 33641273 33641298 -118895961 + AT_rich Low_complexity Low_complexity 1 25 0 2 841 198 0 0 0 chr5 33641393 33641415 -118895844 + (A)n Simple_repeat Simple_repeat 1 22 0 2 841 246 62 0 0 chr5 33641682 33641714 -118895545 + (CCCCCA)n Simple_repeat Simple_repeat 3 34 0 2 841 448 218 40 0 chr5 33642246 33642347 -118894912 + RLTR23 LTR ERV1 324 428 -2 2 841 571 238 16 109 chr5 33643276 33643381 -118893878 + RLTR42-int LTR ERVK 1105 1207 -4315 2 841 969 148 0 20 chr5 33643381 33643533 -118893726 + B1_Mur4 SINE Alu 2 150 0 2 841 571 238 16 109 chr5 33643533 33643611 -118893648 + RLTR42-int LTR ERVK 1208 1271 -4251 2 841 1220 209 34 96 chr5 33643639 33643994 -118893265 + RMER17C LTR ERVK 3 335 -75 2 841 461 251 34 151 chr5 33644059 33644265 -118892994 + RLTR42-int LTR ERVK 1677 1858 -3664 2 841 1310 62 0 131 chr5 33644553 33644775 -118892484 - B2_Mm2 SINE B2 -1 194 2 2 841 1059 190 66 101 chr5 33644903 33645275 -118891984 + RLTR42-int LTR ERVK 1870 2231 -3291 2 841 3299 53 0 8 chr5 33645275 33645672 -118891587 - MTA_Mm LTR MaLR -2 394 1 2 841 1059 196 47 123 chr5 33645672 33645927 -118891332 + RLTR42-int LTR ERVK 2232 2309 -3213 2 841 1332 137 43 86 chr5 33645936 33646159 -118891100 - ORR1C2 LTR MaLR 0 384 171 2 841 312 27 0 0 chr5 33646159 33646196 -118891063 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2 841 201 94 0 0 chr5 33646196 33646227 -118891032 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 2 841 1332 137 43 86 chr5 33646227 33646258 -118891001 - ORR1C2 LTR MaLR -214 170 141 2 841 1271 98 0 0 chr5 33646261 33646434 -118890825 + B2_Mm2 SINE B2 1 173 -22 2 841 180 0 0 0 chr5 33646437 33646457 -118890802 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 2 841 855 125 13 46 chr5 33646457 33646608 -118890651 - ORR1C2 LTR MaLR -238 146 1 2 841 1059 206 116 58 chr5 33646861 33647222 -118890037 - RLTR14 LTR ERV1 0 382 1 2 841 348 351 12 70 chr5 33647410 33647471 -118889788 - RLTR14-int LTR ERV1 -182 5135 5081 2 841 915 68 281 0 chr5 33647471 33647617 -118889642 - B2_Mm2 SINE B2 -6 189 3 2 841 348 351 12 70 chr5 33647617 33647812 -118889447 - RLTR14-int LTR ERV1 -237 5080 4894 2 841 723 295 127 48 chr5 33648478 33649084 -118888175 - RLTR14-int LTR ERV1 -1420 3897 3244 2 841 1850 144 69 84 chr5 33649096 33649475 -118887784 + ORR1C2 LTR MaLR 12 384 0 2 841 353 266 30 68 chr5 33649484 33649617 -118887642 - RLTR6-int LTR ERV1 -2760 5018 4891 2 841 1874 109 152 0 chr5 33649806 33650089 -118887170 - ORR1A3 LTR MaLR 0 326 1 2 841 2419 150 51 0 chr5 33650147 33650540 -118886719 + MTC LTR MaLR 1 413 -8 2 841 656 331 68 75 chr5 33650544 33651371 -118885888 - RLTR14-int LTR ERV1 -3217 4561 3648 2 841 300 257 134 62 chr5 33651717 33651781 -118885478 - RLTR14-int LTR ERV1 -4167 1150 1077 2 841 187 31 0 59 chr5 33651789 33651823 -118885436 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 841 758 191 14 7 chr5 33651823 33651956 -118885303 - B1_Mus1 SINE Alu -13 135 1 2 841 300 257 134 62 chr5 33651956 33652003 -118885256 - RLTR14-int LTR ERV1 -4241 1076 1031 2 841 254 339 45 30 chr5 33652034 33652235 -118885024 - RLTR14-int LTR ERV1 -3536 1527 1324 2 841 209 33 0 32 chr5 33652415 33652446 -118884813 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 841 431 204 11 0 chr5 33652446 33652534 -118884725 - RLTR14-int LTR ERV1 -4408 909 821 2 841 501 308 88 60 chr5 33653110 33653507 -118883752 - RLTR14-int LTR ERV1 -4908 409 2 2 841 924 236 83 124 chr5 33653509 33653788 -118883471 - RLTR14 LTR ERV1 -2 380 119 2 841 2201 135 34 6 chr5 33653788 33654145 -118883114 + ORR1B2 LTR MaLR 1 367 0 2 841 924 236 83 124 chr5 33654145 33654261 -118882998 - RLTR14 LTR ERV1 -264 118 1 2 841 351 214 11 43 chr5 33654264 33654357 -118882902 + RLTR19-int LTR ERVK 2946 3035 -3102 2 841 830 222 57 83 chr5 33654573 33654838 -118882421 + RLTR14 LTR ERV1 124 381 -1 2 841 293 239 12 46 chr5 33654878 33654973 -118882286 - PB1 SINE Alu -61 88 1 2 841 771 145 0 37 chr5 33655407 33655420 -118881839 - B2_Mm1t SINE B2 -24 169 157 2 841 296 0 51 0 chr5 33655420 33655459 -118881800 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2 841 811 109 21 31 chr5 33655459 33655602 -118881657 - B2_Mm2 SINE B2 -37 156 14 2 841 1210 35 14 0 chr5 33656305 33656450 -118880809 + B1_Mus1 SINE Alu 2 148 0 2 841 221 163 0 0 chr5 33656451 33656494 -118880765 + A-rich Low_complexity Low_complexity 1 43 0 2 841 602 250 25 31 chr5 33656959 33657120 -118880139 + RSINE1 SINE B4 2 161 -4 2 841 284 259 0 0 chr5 33657351 33657409 -118879850 - B1_Mur1 SINE Alu -24 125 68 2 841 751 149 0 9 chr5 33657876 33657991 -118879268 - B1_Mus1 SINE Alu -7 141 28 2 841 207 0 0 0 chr5 33658209 33658232 -118879027 + (T)n Simple_repeat Simple_repeat 1 23 0 2 841 1203 68 0 0 chr5 33658232 33658379 -118878880 - B1_Mus2 SINE Alu 0 147 1 2 841 793 207 53 72 chr5 33658488 33658696 -118878563 - B3 SINE B2 -10 206 3 2 841 301 202 76 0 chr5 33658726 33658805 -118878454 - Lx8 LINE L1 -2 7471 7387 2 841 22 0 0 0 chr5 33659635 33659657 -118877602 + AT_rich Low_complexity Low_complexity 1 22 0 2 841 1068 128 36 41 chr5 33659657 33659853 -118877406 + B2_Mm2 SINE B2 1 195 0 2 841 263 97 26 53 chr5 33659888 33659964 -118877295 + T-rich Low_complexity Low_complexity 2 75 0 2 841 392 232 12 0 chr5 33660564 33660646 -118876613 + ORR1A1 LTR MaLR 1 83 -338 2 841 374 250 0 57 chr5 33660648 33660754 -118876505 + B1_Mus1 SINE Alu 40 139 -9 2 841 955 98 0 19 chr5 33660768 33660924 -118876335 + (GAAA)n Simple_repeat Simple_repeat 4 156 0 2 841 280 178 0 0 chr5 33660924 33660969 -118876290 + ORR1A1 LTR MaLR 74 118 -303 2 841 246 128 0 0 chr5 33660969 33661008 -118876251 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 841 871 183 200 0 chr5 33661024 33661204 -118876055 - B3 SINE B2 0 216 1 2 841 1052 63 35 14 chr5 33661243 33661388 -118875871 - B1_Mus1 SINE Alu 0 148 1 2 841 1632 164 5 78 chr5 33661392 33661730 -118875529 - RMER1B Other Other -1 1341 757 2 841 916 190 162 25 chr5 33661730 33661991 -118875268 + ORR1A1 LTR MaLR 95 419 0 2 841 1141 305 134 133 chr5 33661990 33662173 -118875086 + ORR1A1-int LTR MaLR 3 194 -1386 2 841 1300 20 0 0 chr5 33662173 33662319 -118874940 + B1_Mm SINE Alu 2 147 0 2 841 6052 179 69 37 chr5 33662319 33663711 -118873548 + ORR1A1-int LTR MaLR 1 1574 -6 2 841 679 139 83 0 chr5 33663713 33663821 -118873438 + ORR1A1 LTR MaLR 3 119 -302 2 841 760 180 16 0 chr5 33663865 33663993 -118873266 - B3 SINE B2 -86 130 1 2 841 1411 167 130 32 chr5 33663994 33664279 -118872980 + ORR1A1 LTR MaLR 105 417 -4 2 841 1470 93 0 5 chr5 33664279 33664474 -118872785 + B2_Mm2 SINE B2 2 195 0 2 841 273 98 0 0 chr5 33664474 33664515 -118872744 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 2 841 380 156 16 0 chr5 33664582 33664646 -118872613 + RMER15 LTR ERVL 403 467 -108 2 841 313 341 83 45 chr5 33665181 33665470 -118871789 + ORR1D2 LTR MaLR 67 366 -4 2 841 1250 34 0 7 chr5 33665501 33665649 -118871610 + B1_Mus2 SINE Alu 1 147 0 2 841 422 71 114 0 chr5 33665670 33665740 -118871519 + B3 SINE B2 2 79 -137 2 841 1060 90 7 20 chr5 33665759 33665907 -118871352 + B1_Mus2 SINE Alu 2 147 0 2 841 1305 283 152 56 chr5 33665907 33666498 -118870761 + MTE-int LTR MaLR 289 937 -643 2 841 3712 20 121 0 chr5 33666498 33666938 -118870321 + MT2_Mm LTR ERVL 1 493 0 2 841 1305 283 152 56 chr5 33666938 33666952 -118870307 + MTE-int LTR MaLR 938 951 -629 2 841 1890 143 108 31 chr5 33666989 33667379 -118869880 - RMER10A LTR ERVL -18 424 5 2 841 1100 82 0 27 chr5 33667396 33667546 -118869713 - B1_Mus1 SINE Alu -1 147 2 2 841 496 301 256 15 chr5 33667546 33667812 -118869447 + MTE-int LTR MaLR 989 1318 -262 2 841 603 335 75 0 chr5 33667937 33668176 -118869083 + MT2A LTR ERVL 170 426 -107 2 841 732 286 101 10 chr5 33668248 33668456 -118868803 + MTE-int LTR MaLR 1312 1538 -42 2 841 3810 54 21 0 chr5 33668462 33668927 -118868332 - MT2C_Mm LTR ERVL 0 475 1 2 841 278 179 71 0 chr5 33669922 33669978 -118867281 + URR1A DNA MER1_type 37 96 -130 2 841 2586 102 77 37 chr5 33670433 33670890 -118866369 - IAPLTR2_Mm LTR ERVK 0 475 1 2 841 26671 17 5 0 chr5 33670890 33673833 -118863426 - IAPEz-int LTR ERVK 0 6481 3525 2 841 951 80 24 0 chr5 33673833 33673958 -118863301 - IAPEz-int LTR ERVK -2770 4910 4783 2 841 1862 111 4 4 chr5 33673953 33674215 -118863044 - IAPEz-int LTR ERVK -5183 2497 2236 2 841 470 78 0 30 chr5 33674201 33674267 -118862992 - IAPEz-int LTR ERVK -5059 1422 1359 2 841 4627 48 70 32 chr5 33674267 33674898 -118862361 - IAPEz-int LTR ERVK -5819 662 8 2 841 2586 102 77 37 chr5 33674898 33675355 -118861904 - IAPLTR2_Mm LTR ERVK 0 475 1 2 841 2719 51 45 113 chr5 33675587 33676029 -118861230 + RLTR1B LTR ERV1 1 412 -100 2 841 544 252 159 21 chr5 33676085 33676324 -118860935 + RLTR10A LTR ERVK 140 411 0 2 841 1242 57 6 0 chr5 33676326 33676483 -118860776 + RLTR1B LTR ERV1 355 512 0 2 841 375 171 26 46 chr5 33676794 33676903 -118860356 + B1_Mur2 SINE Alu 48 150 0 2 841 813 232 36 31 chr5 33676977 33677173 -118860086 + B3A SINE B2 2 198 0 2 841 198 0 0 0 chr5 33677173 33677195 -118860064 + (A)n Simple_repeat Simple_repeat 1 22 0 2 841 305 268 28 0 chr5 33679567 33679638 -118857621 - ID4 SINE ID -9 74 2 2 841 417 123 0 0 chr5 33679641 33679706 -118857553 + (T)n Simple_repeat Simple_repeat 1 65 0 2 841 680 245 127 5 chr5 33680358 33680555 -118856704 - ID_B1 SINE B4 0 224 4 2 841 317 255 245 0 chr5 33681094 33681200 -118856059 - MER20 DNA MER1_type -87 132 1 3 841 234 0 0 0 chr5 33681731 33681757 -118855502 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 841 345 24 0 0 chr5 33682551 33682593 -118854666 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 3 841 1109 79 0 0 chr5 33682593 33682732 -118854527 - B1_Mus1 SINE Alu -8 140 2 3 841 532 283 65 0 chr5 33683050 33683188 -118854071 + RSINE1 SINE B4 8 154 -11 3 841 315 71 0 0 chr5 33683775 33683817 -118853442 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 3 841 697 167 79 0 chr5 33683817 33683943 -118853316 - B1_Mur2 SINE Alu -12 137 2 3 841 818 186 14 7 chr5 33684883 33685024 -118852235 - B1_Mm SINE Alu -1 146 5 3 841 1383 72 17 0 chr5 33685036 33685217 -118852042 - B2_Mm1t SINE B2 -8 185 2 3 841 670 213 78 52 chr5 33685237 33685430 -118851829 - B3A SINE B2 0 198 1 3 842 250 256 103 0 chr5 33685541 33685619 -118851640 + L2a LINE L2 3340 3425 -1 3 842 409 76 815 0 chr5 33686663 33686782 -118850477 - B3 SINE B2 0 216 1 3 842 494 186 30 40 chr5 33686832 33686933 -118850326 + Lx8 LINE L1 7140 7239 -234 3 842 280 220 0 17 chr5 33686937 33686997 -118850262 - PB1D10 SINE Alu -29 88 30 3 842 823 225 178 23 chr5 33687598 33687857 -118849402 + Lx8 LINE L1 7073 7371 -102 3 842 694 219 148 11 chr5 33688619 33688808 -118848451 + B3 SINE B2 1 215 -1 3 842 1158 55 14 14 chr5 33689510 33689657 -118847602 + B1_Mm SINE Alu 1 147 0 3 842 781 222 111 26 chr5 33690004 33690194 -118847065 - B3 SINE B2 -6 210 5 3 842 528 196 135 0 chr5 33690592 33690725 -118846534 + B2_Mm2 SINE B2 1 151 -44 3 842 638 148 52 0 chr5 33690763 33690878 -118846381 - B1_Mur3 SINE Alu -4 145 25 3 842 21 57 0 0 chr5 33690879 33690914 -118846345 + AT_rich Low_complexity Low_complexity 1 35 0 3 842 1033 228 85 122 chr5 33691238 33691793 -118845466 + L1MB7 LINE L1 3498 4031 -2115 3 842 726 31 21 0 chr5 33691983 33692080 -118845179 + B1_Mus2 SINE Alu 1 99 -48 3 842 482 287 162 14 chr5 33692080 33692426 -118844833 + L1MB7 LINE L1 4027 4423 -1723 3 842 350 332 91 44 chr5 33692424 33692676 -118844583 + L1MB7 LINE L1 4533 4796 -1350 3 842 402 224 123 2 chr5 33692750 33692890 -118844369 + L1MB7 LINE L1 4904 5062 -1084 3 842 288 156 0 0 chr5 33693237 33693282 -118843977 - B1_Mur4 SINE Alu -6 144 100 3 842 406 275 225 13 chr5 33693275 33693426 -118843833 - B3 SINE B2 -32 184 2 3 842 4101 247 104 32 chr5 33693436 33694705 -118842554 - Lx8 LINE L1 -28 7445 6086 3 842 396 288 93 0 chr5 33694782 33694900 -118842359 - ID_B1 SINE B4 -67 157 29 3 842 450 227 118 0 chr5 33694956 33695066 -118842193 - RSINE1 SINE B4 -31 134 12 3 842 331 265 82 8 chr5 33695191 33695349 -118841910 + L1MB7 LINE L1 5157 5330 -816 3 842 389 254 50 43 chr5 33695378 33695518 -118841741 + B4A SINE B4 40 180 -112 3 842 298 259 95 12 chr5 33695638 33695784 -118841475 + L1MB7 LINE L1 5428 5600 -584 3 842 314 284 60 0 chr5 33696065 33696181 -118841078 + L1MB7 LINE L1 6046 6168 -16 3 842 423 0 0 0 chr5 33696420 33696467 -118840792 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 842 829 146 8 0 chr5 33696649 33696779 -118840480 + B1_Mur3 SINE Alu 4 134 -15 3 842 311 314 19 10 chr5 33696813 33696916 -118840343 - PB1D10 SINE Alu -13 104 1 3 842 21 0 0 0 chr5 33697043 33697064 -118840195 + AT_rich Low_complexity Low_complexity 1 21 0 3 842 437 280 40 0 chr5 33697103 33697203 -118840056 + PB1D10 SINE Alu 9 112 -5 3 842 189 0 0 0 chr5 33697371 33697392 -118839867 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3 842 1569 47 0 21 chr5 33698187 33698381 -118838878 + B2_Mm1a SINE B2 2 191 -2 3 842 26 0 0 0 chr5 33698519 33698545 -118838714 + AT_rich Low_complexity Low_complexity 1 26 0 3 842 230 304 96 43 chr5 33698694 33698924 -118838335 - L1M4 LINE L1 -1017 5129 4888 3 842 1181 98 46 0 chr5 33699081 33699254 -118838005 + B2_Mm2 SINE B2 10 190 -5 3 842 346 273 58 48 chr5 33699309 33699413 -118837846 - PB1D10 SINE Alu -10 107 3 3 842 275 292 13 40 chr5 33699352 33699427 -118837832 - ID_B1 SINE B4 -83 141 69 3 842 434 245 18 54 chr5 33699472 33699584 -118837675 - PB1D10 SINE Alu -1 116 9 3 842 794 230 0 89 chr5 33699484 33699675 -118837584 - ID_B1 SINE B4 -40 184 11 3 842 268 148 33 0 chr5 33699676 33699737 -118837522 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 3 842 301 310 217 4 chr5 33699863 33700112 -118837147 - L1MB1 LINE L1 -197 5971 5670 3 842 696 208 46 0 chr5 33701781 33701911 -118835348 + B1_Mur1 SINE Alu 12 147 -2 3 842 270 297 53 32 chr5 33702308 33702402 -118834857 - MER3 DNA MER1_type -84 125 30 3 842 326 246 54 92 chr5 33702447 33702577 -118834682 + MT2B LTR ERVL 152 276 -325 3 842 654 276 8 0 chr5 33702464 33702598 -118834661 + B1_Mur1 SINE Alu 7 141 -8 3 842 24 32 0 0 chr5 33703564 33703595 -118833664 + AT_rich Low_complexity Low_complexity 1 31 0 3 842 505 214 29 10 chr5 33703641 33703745 -118833514 - RSINE1 SINE B4 -49 116 11 3 842 442 301 35 0 chr5 33704134 33704247 -118833012 + RSINE1 SINE B4 4 120 -45 3 842 459 0 0 0 chr5 33704489 33704540 -118832719 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 842 1159 252 71 14 chr5 33704658 33705012 -118832247 - MTEb LTR MaLR -1 378 5 3 842 736 38 276 0 chr5 33706580 33706685 -118830574 + B1_Mus1 SINE Alu 2 135 -13 3 842 270 0 0 0 chr5 33706685 33706715 -118830544 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 842 211 238 109 16 chr5 33707376 33707440 -118829819 - B1F2 SINE Alu -64 85 16 3 842 681 218 7 60 chr5 33707838 33707989 -118829270 - B1_Mur2 SINE Alu -1 148 6 3 842 2374 237 81 75 chr5 33708740 33709740 -118827519 - RMER17B LTR ERVK -4 904 1 3 842 258 150 0 0 chr5 33710633 33710673 -118826586 - B1_Mus1 SINE Alu -106 42 3 3 842 1370 47 11 28 chr5 33710679 33710856 -118826403 - B2_Mm2 SINE B2 -19 176 3 3 842 553 248 0 9 chr5 33711112 33711218 -118826041 + RSINE1 SINE B4 20 124 -41 3 842 321 82 0 0 chr5 33714477 33714526 -118822733 + (GGCTG)n Simple_repeat Simple_repeat 3 51 0 3 842 736 256 46 102 chr5 33714596 33714792 -118822467 + B3 SINE B2 11 195 -21 3 842 611 173 89 15 chr5 33716824 33716959 -118820300 + B1_Mur4 SINE Alu 5 149 -1 3 842 1410 186 128 24 chr5 33717274 33717610 -118819649 - ORR1D1 LTR MaLR -3 371 1 3 842 639 264 107 27 chr5 33717893 33718080 -118819179 + B3 SINE B2 15 216 0 3 842 711 195 63 102 chr5 33718151 33718357 -118818902 - B3 SINE B2 -16 200 3 3 842 369 306 362 7 chr5 33718410 33718684 -118818575 + RMER15-int LTR ERVL 2017 2387 -2612 3 842 579 271 0 8 chr5 33718899 33719018 -118818241 - B1_Mur2 SINE Alu -31 118 1 3 842 228 247 14 0 chr5 33719038 33719111 -118818148 - L1MEc LINE L1 -4097 2303 2230 3 842 978 132 7 0 chr5 33719159 33719295 -118817964 - B1_Mur3 SINE Alu -11 138 2 3 842 231 279 66 0 chr5 33719336 33719397 -118817862 - ID4 SINE ID -17 66 2 3 842 319 268 63 7 chr5 33719583 33719726 -118817533 - L1MEc LINE L1 -4299 2101 1951 3 842 21 36 0 0 chr5 33719894 33719922 -118817337 + GC_rich Low_complexity Low_complexity 1 28 0 3 842 324 276 53 0 chr5 33720001 33720077 -118817182 + RSINE1 SINE B4 38 117 -48 3 842 197 257 163 59 chr5 33721949 33722102 -118815157 + L3 LINE CR1 712 880 -3609 3 842 280 258 140 0 chr5 33722105 33722198 -118815061 + PB1D10 SINE Alu 5 110 -7 3 842 390 91 0 0 chr5 33722463 33722518 -118814741 + (TTA)n Simple_repeat Simple_repeat 2 56 0 3 842 540 111 0 0 chr5 33722519 33722600 -118814659 + (TCC)n Simple_repeat Simple_repeat 2 82 0 3 842 351 0 0 0 chr5 33722596 33722635 -118814624 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 842 553 237 50 42 chr5 33722635 33722754 -118814505 - ID_B1 SINE B4 -14 210 91 3 842 1149 127 39 0 chr5 33722766 33722947 -118814312 - B2_Mm2 SINE B2 -6 189 2 3 842 1669 199 104 0 chr5 33723575 33723912 -118813347 + ORR1D1 LTR MaLR 3 374 0 3 842 397 333 24 40 chr5 33724231 33724356 -118812903 + RSINE1 SINE B4 39 161 -4 3 842 558 188 0 10 chr5 33724512 33724609 -118812650 - MTD LTR MaLR -309 110 15 3 842 1027 259 61 18 chr5 33725059 33725338 -118811921 + B4 SINE B4 2 292 0 3 842 1255 48 7 0 chr5 33725547 33725694 -118811565 - B1_Mus1 SINE Alu 0 148 1 3 842 713 246 138 32 chr5 33725777 33725966 -118811293 - B3 SINE B2 -6 210 2 3 842 1755 155 83 44 chr5 33726426 33726808 -118810451 - MTD LTR MaLR -14 405 18 3 842 306 0 0 0 chr5 33726810 33726844 -118810415 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 842 627 191 319 5 chr5 33726912 33727122 -118810137 + ORR1D1 LTR MaLR 99 374 0 3 842 585 323 0 25 chr5 33727564 33727726 -118809533 - RSINE1 SINE B4 -2 163 6 3 842 486 174 212 35 chr5 33728727 33728840 -118808419 - B1_Mur1 SINE Alu 0 149 17 3 842 318 26 0 0 chr5 33728841 33728880 -118808379 + (CCCCCA)n Simple_repeat Simple_repeat 2 40 0 3 842 523 254 114 8 chr5 33728983 33729114 -118808145 + RSINE1 SINE B4 15 159 -6 3 842 1170 210 9 14 chr5 33729484 33729701 -118807558 - B3 SINE B2 0 216 1 3 842 369 0 0 0 chr5 33729723 33729764 -118807495 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 3 842 1164 82 13 0 chr5 33729764 33729923 -118807336 - B2_Mm2 SINE B2 -34 161 1 3 842 302 293 0 0 chr5 33729977 33730052 -118807207 - ID4 SINE ID -5 78 4 3 842 332 312 0 40 chr5 33730058 33730158 -118807101 - MER58C DNA MER1_type -116 99 4 3 842 23 0 0 0 chr5 33732175 33732198 -118805061 + AT_rich Low_complexity Low_complexity 1 23 0 4 842 489 110 0 0 chr5 33733074 33733147 -118804112 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 842 1680 36 0 0 chr5 33733153 33733345 -118803914 - B2_Mm1a SINE B2 0 193 2 4 842 588 29 0 0 chr5 33733345 33733415 -118803844 + (TTTTC)n Simple_repeat Simple_repeat 4 73 0 4 842 1196 70 0 0 chr5 33733417 33733559 -118803700 - B1_Mus1 SINE Alu -6 142 1 4 842 2480 96 3 0 chr5 33734044 33734368 -118802891 - ORR1A4 LTR MaLR 0 329 5 4 842 468 0 0 0 chr5 33735880 33735932 -118801327 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 842 380 214 119 0 chr5 33735932 33736016 -118801243 - RSINE1 SINE B4 -70 95 2 4 842 1300 151 37 0 chr5 33736133 33736351 -118800908 + URR1A DNA MER1_type 1 226 0 4 842 460 280 31 8 chr5 33737633 33737778 -118799481 + B1F SINE Alu 1 148 -1 4 842 433 182 13 25 chr5 33737783 33737862 -118799397 + ID4_ SINE ID 5 82 -1 4 842 238 204 99 72 chr5 33738127 33738238 -118799021 - MLT1L LTR MaLR -143 467 354 4 842 201 26 73 49 chr5 33742991 33743032 -118794227 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 4 842 1199 48 7 0 chr5 33743033 33743179 -118794080 - B1_Mus1 SINE Alu 0 148 2 4 842 252 186 0 0 chr5 33744153 33744212 -118793047 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 4 842 337 176 143 71 chr5 33744214 33744312 -118792947 - B1_Mur2 SINE Alu -7 142 38 4 842 271 167 0 0 chr5 33744461 33744503 -118792756 - MT2B LTR ERVL -313 288 247 4 842 946 154 0 26 chr5 33749084 33749237 -118788022 - B1_Mur4 SINE Alu 0 150 2 4 842 266 308 39 0 chr5 33749920 33749998 -118787261 - ID4 SINE ID -1 82 2 4 842 1090 205 24 0 chr5 33750370 33750580 -118786679 - B3 SINE B2 0 216 2 4 842 417 190 5 50 chr5 33753100 33753200 -118784059 + ID4_ SINE ID 13 110 -42 4 842 293 229 32 16 chr5 33754530 33754592 -118782667 - ID4_ SINE ID -16 67 5 4 842 239 307 103 17 chr5 33757732 33757848 -118779411 + ID_B1 SINE B4 51 176 -48 4 842 305 216 118 49 chr5 33757770 33757872 -118779387 + PB1D7 SINE Alu 12 120 0 4 842 416 351 6 92 chr5 33757872 33757958 -118779301 + B1F2 SINE Alu 1 86 -63 4 842 1023 98 14 14 chr5 33757958 33758103 -118779156 + B1_Mus2 SINE Alu 2 146 -1 4 842 416 351 6 92 chr5 33758103 33758179 -118779080 + B1F2 SINE Alu 87 149 0 4 842 714 231 0 20 chr5 33758535 33758685 -118778574 - B1_Mus2 SINE Alu 0 147 1 4 842 740 313 88 12 chr5 33758786 33759035 -118778224 + B4A SINE B4 2 269 -23 4 842 713 193 30 0 chr5 33759152 33759287 -118777972 - B1_Mus1 SINE Alu -9 139 1 4 842 335 308 64 7 chr5 33759637 33759790 -118777469 - Lx9 LINE L1 -1128 6516 6254 4 842 2103 252 102 142 chr5 33759806 33760492 -118776767 + L1_Rod LINE L1 1692 3206 -2674 4 842 555 220 93 0 chr5 33760492 33760610 -118776649 - B1_Mur2 SINE Alu 0 149 21 4 842 2103 252 102 142 chr5 33760610 33760945 -118776314 + L1_Rod LINE L1 3207 3951 -1929 4 842 783 212 20 0 chr5 33760945 33761091 -118776168 + B1_Mur4 SINE Alu 2 150 0 4 842 2103 258 110 156 chr5 33761091 33761727 -118775532 + L1_Rod LINE L1 2710 3366 -2481 4 842 293 191 63 0 chr5 33761727 33761790 -118775469 + B3 SINE B2 146 212 -4 4 842 2103 258 110 156 chr5 33761790 33762150 -118775109 + L1_Rod LINE L1 3367 3740 -2107 4 842 786 143 30 0 chr5 33762412 33762545 -118774714 - B1_Mus1 SINE Alu -2 146 10 4 842 21 36 0 0 chr5 33762563 33762591 -118774668 + AT_rich Low_complexity Low_complexity 1 28 0 4 842 1617 253 77 16 chr5 33762595 33763186 -118774073 + L1_Rod LINE L1 4618 5217 -630 4 842 427 283 26 70 chr5 33763350 33763506 -118773753 - B1_Mur1 SINE Alu 0 149 1 4 842 790 204 25 13 chr5 33763562 33763721 -118773538 - B3 SINE B2 -12 204 44 4 842 504 221 286 105 chr5 33763764 33764025 -118773234 - L1M4 LINE L1 -682 5482 5167 4 842 679 239 5 119 chr5 33764025 33764210 -118773049 - RSINE1 SINE B4 0 165 2 4 842 504 208 96 188 chr5 33764210 33764377 -118772882 - L1M4 LINE L1 -980 5166 5023 4 842 759 209 72 0 chr5 33764379 33764518 -118772741 - B1_Mur3 SINE Alu 0 149 1 4 842 328 214 97 0 chr5 33764518 33764621 -118772638 - L1M4 LINE L1 -1100 5046 4934 4 842 688 144 0 78 chr5 33764692 33764820 -118772439 - MTC LTR MaLR -36 385 268 4 842 487 289 91 28 chr5 33764825 33765177 -118772082 - L1M4 LINE L1 -1617 4529 4156 4 842 245 167 0 0 chr5 33765221 33765263 -118771996 - L1M4 LINE L1 -1995 4151 4110 4 842 389 114 76 0 chr5 33765352 33765431 -118771828 - L1M4 LINE L1 -985 5161 5077 4 842 198 0 0 0 chr5 33765452 33765474 -118771785 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 4 842 516 198 25 49 chr5 33765542 33765664 -118771595 - PB1D9 SINE Alu 0 120 2 4 842 260 271 101 54 chr5 33765790 33765958 -118771301 - L1M4 LINE L1 -2218 3928 3718 4 842 933 260 123 71 chr5 33765958 33765972 -118771287 - L1M4 LINE L1 -2889 3257 3246 4 842 297 0 0 0 chr5 33765972 33766005 -118771254 + (TTAG)n Simple_repeat Simple_repeat 3 35 0 4 842 646 132 213 8 chr5 33766007 33766095 -118771164 - B1_Mus1 SINE Alu -1 147 34 4 842 216 0 0 0 chr5 33766095 33766119 -118771140 + (C)n Simple_repeat Simple_repeat 1 24 0 4 842 646 132 213 8 chr5 33766119 33766152 -118771107 - B1_Mus1 SINE Alu -115 33 1 4 842 933 260 123 71 chr5 33766152 33766433 -118770826 - L1M4 LINE L1 -2901 3245 2946 4 842 332 245 64 36 chr5 33766433 33766543 -118770716 - PB1D10 SINE Alu 0 117 5 4 842 933 260 123 71 chr5 33766543 33766665 -118770594 - L1M4 LINE L1 -3201 2945 2814 4 842 418 292 38 0 chr5 33767535 33767641 -118769618 - PB1D10 SINE Alu -7 110 1 4 842 363 226 64 36 chr5 33767675 33767785 -118769474 - PB1D10 SINE Alu 0 117 5 4 842 399 200 200 0 chr5 33767792 33767907 -118769352 - L1M4 LINE L1 -3195 2951 2814 4 842 264 286 52 0 chr5 33767961 33767975 -118769284 - BC1_Mm scRNA scRNA -70 82 7 4 842 317 259 0 0 chr5 33767975 33768033 -118769226 - tRNA-Ala-GCY_ tRNA tRNA -15 60 3 4 842 647 107 128 24 chr5 33768751 33768876 -118768383 + L1Md_F2 LINE L1 6445 6582 0 4 842 525 281 0 137 chr5 33769861 33770022 -118767237 - ID_B1 SINE B4 -2 222 84 4 842 3031 167 11 78 chr5 33770279 33770762 -118766497 + RMER15 LTR ERVL 1 464 -111 4 842 956 113 15 8 chr5 33770762 33770896 -118766363 + B1_Mur4 SINE Alu 3 137 -13 4 842 378 0 0 0 chr5 33770896 33770938 -118766321 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 842 3031 167 11 78 chr5 33770938 33771069 -118766190 + RMER15 LTR ERVL 465 574 -1 4 842 396 0 0 0 chr5 33772681 33772725 -118764534 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 842 48 43 0 0 chr5 33773579 33773648 -118763611 + GC_rich Low_complexity Low_complexity 1 69 0 4 842 30 0 0 0 chr5 33776499 33776529 -118760730 + GC_rich Low_complexity Low_complexity 1 30 0 4 842 23 101 0 0 chr5 33776650 33776729 -118760530 + GC_rich Low_complexity Low_complexity 1 79 0 4 842 228 35 0 0 chr5 33778590 33778619 -118758640 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 842 468 0 0 0 chr5 33778619 33778670 -118758589 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 842 369 0 0 0 chr5 33781415 33781456 -118755803 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 842 242 344 21 10 chr5 33781629 33781726 -118755533 - MIRc SINE MIR -130 138 41 4 842 233 315 132 20 chr5 33782274 33782299 -118754960 - B4 SINE B4 -42 250 203 4 842 308 222 225 25 chr5 33782299 33782323 -118754936 - B1_Mus1 SINE Alu 0 148 125 4 842 1129 88 0 33 chr5 33782323 33782337 -118754922 - B1_Mus1 SINE Alu 0 148 139 4 842 198 0 0 0 chr5 33782337 33782359 -118754900 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 842 1129 88 0 33 chr5 33782359 33782496 -118754763 - B1_Mus1 SINE Alu -10 138 2 4 842 362 151 161 13 chr5 33782496 33782591 -118754668 - PB1D9 SINE Alu -24 124 6 4 842 317 137 158 56 chr5 33782964 33783083 -118754176 - B2_Mm2 SINE B2 0 193 47 4 842 1264 110 35 0 chr5 33783115 33783288 -118753971 - B2_Mm1t SINE B2 -14 179 1 4 842 191 375 21 10 chr5 33783309 33783406 -118753853 + MIRc SINE MIR 41 138 -130 4 842 230 51 0 49 chr5 33783957 33783998 -118753261 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 4 842 182 162 27 0 chr5 33784987 33785024 -118752235 + L2b LINE L2 3320 3357 -18 4 842 233 315 66 0 chr5 33786903 33787025 -118750234 + L2a LINE L2 2955 3086 -289 4 842 304 294 81 17 chr5 33787517 33787690 -118749569 + MER97c DNA MER1_type? 109 292 -798 4 842 21 0 0 0 chr5 33787976 33787997 -118749262 + AT_rich Low_complexity Low_complexity 1 21 0 4 842 305 286 81 12 chr5 33788354 33788527 -118748732 - L1MC LINE L1 -2824 3322 3138 4 842 558 147 0 0 chr5 33788530 33788659 -118748600 + (TG)n Simple_repeat Simple_repeat 2 130 0 4 842 749 316 25 42 chr5 33788685 33788969 -118748290 - B4A SINE B4 -6 286 8 4 842 358 318 114 43 chr5 33789003 33789187 -118748072 - L1MC LINE L1 -3028 3118 2922 4 842 393 277 64 0 chr5 33789190 33789284 -118747975 + PB1D10 SINE Alu 1 100 -17 4 842 322 178 35 82 chr5 33789318 33789489 -118747770 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 4 842 230 316 38 0 chr5 33789873 33789952 -118747307 + ID4 SINE ID 2 83 0 4 842 1391 66 55 0 chr5 33790027 33790209 -118747050 + B2_Mm2 SINE B2 1 192 -3 4 842 235 268 156 7 chr5 33790211 33790365 -118746894 + L1M4 LINE L1 4910 5086 -1060 4 842 470 196 33 0 chr5 33790439 33790531 -118746728 + B3 SINE B2 2 96 -120 4 842 573 246 36 29 chr5 33790586 33790761 -118746498 + B3A SINE B2 8 182 -16 4 842 255 31 0 0 chr5 33790766 33790798 -118746461 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 842 465 272 39 0 chr5 33790811 33790914 -118746345 - RSINE1 SINE B4 -56 109 3 4 842 27 29 0 0 chr5 33790914 33790948 -118746311 + AT_rich Low_complexity Low_complexity 1 34 0 4 842 289 274 8 0 chr5 33791020 33791137 -118746122 - L1M3 LINE L1 -821 5325 5208 4 842 183 42 0 0 chr5 33791240 33791264 -118745995 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 842 681 251 52 31 chr5 33791264 33791446 -118745813 - B3A SINE B2 -10 188 1 4 842 390 280 29 13 chr5 33791595 33791800 -118745459 - L1M3 LINE L1 -1591 4555 4339 4 842 450 0 0 0 chr5 33793971 33794021 -118743238 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 842 1103 88 7 0 chr5 33795347 33795494 -118741765 - B1_Mus1 SINE Alu 0 148 1 4 842 420 171 224 37 chr5 33795498 33795603 -118741656 + RCHARR1 DNA MER1_type 1 121 -853 4 842 884 189 0 0 chr5 33795603 33795746 -118741513 + B1_Mur1 SINE Alu 1 143 -6 4 842 420 171 224 37 chr5 33795746 33795774 -118741485 + RCHARR1 DNA MER1_type 122 159 -815 4 842 328 168 0 56 chr5 33795777 33795884 -118741375 + (CACCAT)n Simple_repeat Simple_repeat 5 105 0 4 842 21 36 0 0 chr5 33796738 33796766 -118740493 + AT_rich Low_complexity Low_complexity 1 28 0 5 842 266 169 0 33 chr5 33796766 33796827 -118740432 + (TATG)n Simple_repeat Simple_repeat 4 62 0 5 842 1062 253 20 62 chr5 33796828 33797132 -118740127 - B4A SINE B4 0 292 2 5 842 502 276 73 16 chr5 33797190 33797397 -118739862 + B3A SINE B2 1 210 -6 5 842 828 209 52 0 chr5 33797403 33797594 -118739665 - B3 SINE B2 -8 208 8 5 842 1039 226 120 12 chr5 33798076 33798335 -118738924 + B4 SINE B4 2 288 -4 5 842 334 278 165 40 chr5 33798976 33799152 -118738107 - MLT1D LTR MaLR -103 402 205 5 842 225 0 0 0 chr5 33804514 33804539 -118732720 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 842 183 156 0 0 chr5 33804539 33804571 -118732688 + (CG)n Simple_repeat Simple_repeat 1 32 0 5 842 956 170 128 0 chr5 33805356 33805544 -118731715 + URR1A DNA MER1_type 1 212 -14 5 842 311 350 7 0 chr5 33808846 33808986 -118728273 + (ATGGTG)n Simple_repeat Simple_repeat 5 145 0 5 842 354 359 0 7 chr5 33808987 33809133 -118728126 - HAL1-2a_MD LINE L1 -535 2489 2345 5 842 436 286 0 96 chr5 33809114 33809292 -118727967 - HAL1-2a_MD LINE L1 -522 2502 2342 5 842 404 301 22 38 chr5 33809294 33809477 -118727782 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 5 842 3563 30 0 0 chr5 33812642 33813038 -118724221 + MTA_Mm LTR MaLR 1 396 0 5 842 2446 53 3 3 chr5 33813547 33813852 -118723407 + L1_Mus2 LINE L1 6261 6565 -1 5 842 703 307 23 0 chr5 33813936 33814112 -118723147 - B3A SINE B2 -18 180 1 5 842 407 218 27 0 chr5 33814308 33814455 -118722804 + (TGGA)n Simple_repeat Simple_repeat 4 154 0 5 842 273 238 28 39 chr5 33814504 33814683 -118722576 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 5 842 356 289 34 23 chr5 33814714 33814891 -118722368 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 5 842 219 139 0 0 chr5 33814904 33814940 -118722319 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 5 842 2548 139 25 15 chr5 33814982 33815385 -118721874 + MTB_Mm LTR MaLR 1 407 0 5 843 617 272 79 35 chr5 33818769 33819124 -118718135 - L1M5 LINE L1 -1384 4762 4379 5 843 566 290 80 100 chr5 33819158 33819507 -118717752 + ORR1E LTR MaLR 1 342 -17 5 843 2368 326 99 45 chr5 33819522 33819649 -118717610 + ORR1E-int LTR MaLR 1 139 -1441 5 843 2110 135 98 33 chr5 33819649 33820017 -118717242 - ORR1B1 LTR MaLR -2 392 1 5 843 2368 326 99 45 chr5 33820017 33820711 -118716548 + ORR1E-int LTR MaLR 140 853 -727 5 843 927 164 7 0 chr5 33820711 33820857 -118716402 - B1_Mus2 SINE Alu 0 147 1 5 843 2368 326 99 45 chr5 33820857 33821331 -118715928 + ORR1E-int LTR MaLR 854 1368 -212 5 843 986 236 132 27 chr5 33821376 33821677 -118715582 + RMER19C LTR ERVK 223 527 -84 5 843 307 222 0 16 chr5 33821672 33821736 -118715523 + RSINE1 SINE B4 101 163 -2 5 843 213 39 0 0 chr5 33828759 33828785 -118708474 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 843 261 0 0 0 chr5 33829508 33829537 -118707722 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 843 474 18 0 0 chr5 33829537 33829591 -118707668 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 843 292 271 105 11 chr5 33831969 33832064 -118705195 + B1F SINE Alu 14 116 -33 5 843 503 317 65 0 chr5 33832088 33832274 -118704985 + B3A SINE B2 1 198 0 5 843 761 182 107 11 chr5 33832823 33833001 -118704258 - B3 SINE B2 -21 195 1 5 843 282 282 168 0 chr5 33833242 33833373 -118703886 - MLT1B LTR MaLR -193 197 45 5 843 424 275 0 0 chr5 33834636 33834727 -118702532 + PB1D10 SINE Alu 21 111 -6 5 843 952 187 82 6 chr5 33835116 33835299 -118701960 - B3A SINE B2 0 198 2 5 843 1083 217 34 0 chr5 33835331 33835538 -118701721 + B3 SINE B2 2 215 -1 5 843 299 351 23 0 chr5 33835634 33835765 -118701494 - L1MC LINE L1 -877 5467 5334 5 843 724 240 20 0 chr5 33835914 33836060 -118701199 + B1_Mur2 SINE Alu 1 149 0 5 843 1370 104 5 25 chr5 33836079 33836277 -118700982 + B2_Mm2 SINE B2 2 195 0 5 843 1178 62 7 0 chr5 33836310 33836456 -118700803 + B1_Mus1 SINE Alu 2 148 0 5 843 591 101 11 86 chr5 33836462 33836636 -118700623 + GA-rich Low_complexity Low_complexity 4 164 0 5 843 1308 99 33 0 chr5 33836686 33836867 -118700392 - B2_Mm1t SINE B2 -6 187 1 5 843 328 320 7 74 chr5 33836953 33837088 -118700171 + RSINE1 SINE B4 40 165 0 5 843 280 192 91 0 chr5 33837304 33837395 -118699864 - L1M5 LINE L1 -355 5824 5723 5 843 259 238 0 16 chr5 33839653 33839704 -118697555 + (ATGGTG)n Simple_repeat Simple_repeat 3 53 0 5 843 222 37 0 0 chr5 33839704 33839731 -118697528 + (CTG)n Simple_repeat Simple_repeat 3 29 0 5 843 259 238 0 16 chr5 33839731 33839743 -118697516 + (ATGGTG)n Simple_repeat Simple_repeat 3 14 0 5 843 381 283 5 96 chr5 33839756 33839955 -118697304 - HAL1-2a_MD LINE L1 -505 2519 2339 5 843 252 258 91 91 chr5 33841370 33841545 -118695714 - MTE-int LTR MaLR -492 1088 914 5 843 592 227 40 60 chr5 33841710 33841860 -118695399 - B1_Mur1 SINE Alu -1 148 2 5 843 183 156 0 0 chr5 33846965 33846997 -118690262 + T-rich Low_complexity Low_complexity 1 32 0 5 843 641 169 169 0 chr5 33847011 33847129 -118690130 - B1_Mus1 SINE Alu -9 139 2 5 843 257 296 0 0 chr5 33847161 33847232 -118690027 + C-rich Low_complexity Low_complexity 1 71 0 5 843 583 91 140 10 chr5 33847613 33847713 -118689546 + RMER4B LTR ERVK 473 585 0 5 843 274 295 42 10 chr5 33849927 33850023 -118687236 - Lx8 LINE L1 -348 7125 7027 5 843 340 223 69 69 chr5 33850370 33850500 -118686759 + RLTR15 LTR ERVK 1 130 -229 5 843 295 299 62 62 chr5 33850493 33850782 -118686477 + RLTR15 LTR ERVK 71 359 0 5 843 1145 186 33 0 chr5 33852247 33852462 -118684797 - URR1A DNA MER1_type -3 223 2 5 843 660 186 62 0 chr5 33852735 33852864 -118684395 - B1_Mur1 SINE Alu -3 146 10 5 843 288 211 115 26 chr5 33853108 33853186 -118684073 - RSINE1 SINE B4 -80 85 1 5 843 775 188 72 0 chr5 33853222 33853360 -118683899 - B1_Mur1 SINE Alu 0 149 2 5 843 231 212 41 0 chr5 33853452 33853512 -118683747 - MIR SINE MIR -116 152 86 5 843 270 176 0 0 chr5 33855199 33855250 -118682009 + (CTCA)n Simple_repeat Simple_repeat 2 52 0 5 843 281 244 142 8 chr5 33855909 33856029 -118681230 - L1MB3 LINE L1 -289 5894 5759 5 843 2086 184 88 8 chr5 33856748 33857136 -118680123 + MTD LTR MaLR 1 419 0 5 843 340 354 18 0 chr5 33857346 33857510 -118679749 + (CCTG)n Simple_repeat Simple_repeat 2 168 0 5 843 1185 55 14 0 chr5 33858089 33858234 -118679025 + B1_Mus1 SINE Alu 2 148 0 5 843 276 290 244 0 chr5 33858423 33858554 -118678705 + MLT1C LTR MaLR 161 323 -144 5 843 545 189 6 0 chr5 33865889 33866053 -118671206 + (TGGA)n Simple_repeat Simple_repeat 2 166 0 5 843 366 326 5 33 chr5 33866075 33866259 -118671000 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 5 843 230 316 13 0 chr5 33866228 33866304 -118670955 + (TGAA)n Simple_repeat Simple_repeat 1 77 0 5 843 262 263 0 21 chr5 33866347 33866487 -118670772 + (TGGA)n Simple_repeat Simple_repeat 3 139 0 5 843 349 331 24 0 chr5 33866573 33866742 -118670517 + (TGGA)n Simple_repeat Simple_repeat 4 176 0 5 843 208 379 8 8 chr5 33866698 33866823 -118670436 + (TGGG)n Simple_repeat Simple_repeat 4 128 0 5 843 845 75 0 270 chr5 33867117 33867317 -118669942 + B1_Mm SINE Alu 2 147 0 5 843 334 332 42 72 chr5 33867422 33867659 -118669600 - ORR1E LTR MaLR -128 231 2 5 843 490 274 181 30 chr5 33868118 33868355 -118668904 - B4A SINE B4 -18 274 2 5 843 2510 56 25 19 chr5 33868411 33868736 -118668523 + ORR1A2 LTR MaLR 1 327 0 5 843 217 256 35 11 chr5 33872729 33872816 -118664443 + G-rich Low_complexity Low_complexity 4 92 0 5 843 482 55 27 0 chr5 33873015 33873088 -118664171 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 5 843 1161 69 0 0 chr5 33873088 33873232 -118664027 - B1_Mus2 SINE Alu -3 144 1 5 843 198 71 0 0 chr5 33873268 33873296 -118663963 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 843 633 86 32 0 chr5 33873296 33873389 -118663870 + B2_Mm2 SINE B2 85 180 -15 5 843 929 88 7 0 chr5 33873389 33873526 -118663733 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 5 843 338 319 27 47 chr5 33873626 33873642 -118663617 + ID_B1 SINE B4 80 222 0 5 843 593 246 23 0 chr5 33873642 33873772 -118663487 + B1F2 SINE Alu 17 149 0 5 843 195 42 0 0 chr5 33874092 33874116 -118663143 + (CAGG)n Simple_repeat Simple_repeat 2 25 0 5 843 1316 96 27 0 chr5 33874566 33874754 -118662505 - B2_Mm1t SINE B2 0 193 1 5 843 553 248 26 0 chr5 33874778 33874891 -118662368 - PB1D7 SINE Alu 0 120 5 5 843 474 242 143 149 chr5 33875994 33876363 -118660896 + MTD LTR MaLR 1 419 0 5 843 23 0 0 0 chr5 33877284 33877307 -118659952 + GC_rich Low_complexity Low_complexity 1 23 0 5 843 252 0 0 0 chr5 33877482 33877510 -118659749 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 843 249 314 0 69 chr5 33880921 33881109 -118656150 + C-rich Low_complexity Low_complexity 3 177 0 5 843 237 281 7 49 chr5 33881164 33881306 -118655953 + CT-rich Low_complexity Low_complexity 1 136 0 5 843 505 153 0 12 chr5 33881334 33881420 -118655839 - PB1D9 SINE Alu -2 118 34 5 843 228 111 0 0 chr5 33882198 33882234 -118655025 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 843 2769 166 110 4 chr5 33884029 33884549 -118652710 - RMER15 LTR ERVL 0 575 1 5 843 22 35 0 0 chr5 33886967 33886996 -118650263 + AT_rich Low_complexity Low_complexity 1 29 0 5 843 430 322 125 54 chr5 33888850 33889185 -118648074 - ORR1E LTR MaLR 0 359 1 5 843 372 305 101 43 chr5 33890192 33890449 -118646810 - ERVL-E-int LTR ERVL -1521 4146 3875 5 843 255 61 0 0 chr5 33890504 33890537 -118646722 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 843 675 199 30 8 chr5 33890537 33890669 -118646590 - B1_Mur2 SINE Alu -9 140 6 5 843 380 315 63 59 chr5 33891823 33892245 -118645014 - L1M5 LINE L1 -774 5372 4956 5 843 302 132 57 0 chr5 33892809 33892862 -118644397 - ORR1B2 LTR MaLR 0 367 312 6 843 3185 195 66 43 chr5 33892862 33893880 -118643379 - RMER1B Other Other -2 1064 3 6 843 1448 211 77 26 chr5 33893855 33894205 -118643054 - RMER1B Other Other -654 412 45 6 843 1887 98 70 19 chr5 33894391 33894703 -118642556 - ORR1B2 LTR MaLR -39 328 1 6 843 482 234 36 0 chr5 33894703 33894812 -118642447 + RSINE1 SINE B4 22 134 -31 6 843 757 179 208 0 chr5 33894813 33894981 -118642278 + B3 SINE B2 14 216 0 6 843 524 284 86 5 chr5 33895001 33895199 -118642060 - L1M2 LINE L1 -386 5803 5590 6 843 439 132 0 0 chr5 33895212 33895280 -118641979 + ORR1D1 LTR MaLR 25 92 -282 6 843 532 82 11 45 chr5 33895290 33895379 -118641880 - RMER19B LTR ERVK 0 902 817 6 843 1217 130 109 36 chr5 33895406 33895654 -118641605 + ORR1D1 LTR MaLR 109 374 0 6 843 446 259 42 7 chr5 33895727 33895871 -118641388 - L1M2 LINE L1 -832 5468 5320 6 843 581 255 44 13 chr5 33895926 33896085 -118641174 - RSINE1 SINE B4 0 165 2 6 843 263 226 63 21 chr5 33896095 33896190 -118641069 - L1M2 LINE L1 -825 5318 5220 6 843 333 266 50 19 chr5 33896190 33896293 -118640966 - PB1D10 SINE Alu -5 112 10 6 843 552 221 0 84 chr5 33896304 33896447 -118640812 + B3A SINE B2 3 133 -65 6 843 473 241 54 23 chr5 33896437 33896599 -118640660 + MTEa LTR MaLR 201 372 -2 6 843 428 323 140 62 chr5 33896627 33896734 -118640525 - L1M5 LINE L1 -2981 3165 3058 5 843 1163 48 0 7 chr5 33896734 33896882 -118640377 - B1_Mus2 SINE Alu 0 147 1 6 843 428 323 140 62 chr5 33896882 33896909 -118640350 - L1M5 LINE L1 -3089 3057 3036 5 843 792 214 98 5 chr5 33896909 33897102 -118640157 - B3 SINE B2 -5 211 1 6 843 428 323 140 62 chr5 33897102 33897366 -118639893 - L1M5 LINE L1 -3111 3035 2736 5 843 455 125 117 12 chr5 33897752 33897851 -118639408 + B1_Mur4 SINE Alu 47 147 -2 6 843 640 241 41 0 chr5 33897981 33898126 -118639133 - RSINE1 SINE B4 -12 153 3 6 843 334 329 19 77 chr5 33898181 33898336 -118638923 - L1M2 LINE L1 -3744 2399 2254 6 843 4242 20 0 0 chr5 33903477 33903970 -118633289 + MT2_Mm LTR ERVL 1 493 0 6 843 1009 167 94 0 chr5 33904060 33904252 -118633007 + B3 SINE B2 1 210 -6 6 843 853 143 20 0 chr5 33904269 33904416 -118632843 - B1_Mur4 SINE Alu 0 150 1 6 843 243 0 0 0 chr5 33904417 33904444 -118632815 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 843 237 283 19 0 chr5 33904455 33904508 -118632751 + ID SINE ID 2 55 -169 6 843 532 312 6 31 chr5 33904556 33904680 -118632579 + RSINE1 SINE B4 8 127 -38 6 843 591 51 0 0 chr5 33904680 33904759 -118632500 + (CA)n Simple_repeat Simple_repeat 1 79 0 6 843 532 312 6 31 chr5 33904759 33904796 -118632463 + RSINE1 SINE B4 128 165 0 6 843 513 0 0 0 chr5 33904801 33904858 -118632401 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 6 843 1170 75 0 0 chr5 33904868 33905028 -118632231 + B2_Mm2 SINE B2 2 161 -34 6 843 432 0 0 0 chr5 33905028 33905076 -118632183 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 6 843 737 149 0 0 chr5 33905097 33905211 -118632048 + B1_Mus1 SINE Alu 35 148 0 6 843 321 26 0 0 chr5 33905211 33905249 -118632010 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 6 843 723 54 0 0 chr5 33906607 33906699 -118630560 + (GA)n Simple_repeat Simple_repeat 2 93 0 6 843 263 312 9 5 chr5 33907811 33908040 -118629219 + (TGGA)n Simple_repeat Simple_repeat 1 230 0 6 843 198 224 0 0 chr5 33908084 33908133 -118629126 + (TGGG)n Simple_repeat Simple_repeat 2 50 0 6 843 228 267 17 0 chr5 33908146 33908206 -118629053 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 6 843 417 39 0 0 chr5 33909188 33909239 -118628020 + (TATG)n Simple_repeat Simple_repeat 3 53 0 6 843 2259 78 21 21 chr5 33913637 33913964 -118623295 - IAPLTR2b LTR ERVK 0 327 1 6 843 468 297 142 13 chr5 33914411 33914636 -118622623 - Tigger5 DNA MER2_type 0 2406 2153 6 843 283 172 0 0 chr5 33915120 33915178 -118622081 + (CCCCAG)n Simple_repeat Simple_repeat 2 59 0 6 843 230 352 8 16 chr5 33918606 33918730 -118618529 - RMER12 LTR ERVK -464 858 736 6 843 343 228 109 0 chr5 33919042 33919143 -118618116 + PB1D10 SINE Alu 5 116 -1 6 843 367 259 38 0 chr5 33919173 33919268 -118617991 + B3A SINE B2 2 104 -91 6 843 1111 49 21 0 chr5 33919533 33919677 -118617582 - B1_Mus1 SINE Alu 0 148 2 6 843 582 54 0 0 chr5 33919682 33919756 -118617503 + (TCC)n Simple_repeat Simple_repeat 2 75 0 6 843 1151 56 0 0 chr5 33919757 33919900 -118617359 - B1_Mus1 SINE Alu -5 143 1 6 843 302 227 280 0 chr5 33919940 33920015 -118617244 - RSINE1 SINE B4 -2 163 68 6 843 519 148 0 0 chr5 33920085 33920173 -118617086 + (TCC)n Simple_repeat Simple_repeat 3 90 0 6 843 781 200 20 14 chr5 33920202 33920349 -118616910 - B1_Mus1 SINE Alu 0 148 1 6 843 278 288 0 0 chr5 33920391 33920457 -118616802 - PB1D10 SINE Alu -49 68 3 6 843 587 299 60 28 chr5 33920693 33920975 -118616284 - B4A SINE B4 0 292 2 6 843 723 152 50 7 chr5 33921015 33921154 -118616105 + B1_Mur4 SINE Alu 6 150 0 6 843 266 24 73 0 chr5 33921159 33921200 -118616059 + (CAAAAA)n Simple_repeat Simple_repeat 6 49 0 6 843 649 274 19 6 chr5 33921316 33921474 -118615785 + ID_B1 SINE B4 2 161 -63 6 843 392 276 48 90 chr5 33921485 33921652 -118615607 + RSINE1 SINE B4 6 165 0 6 843 1067 122 0 6 chr5 33921691 33921864 -118615395 + (GGAAA)n Simple_repeat Simple_repeat 5 176 0 6 843 360 0 0 0 chr5 33922534 33922574 -118614685 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 843 300 297 52 35 chr5 33922640 33922755 -118614504 + MER2 DNA MER2_type 86 202 -143 6 843 430 289 113 0 chr5 33923344 33923486 -118613773 + RSINE1 SINE B4 8 165 0 6 843 464 262 166 9 chr5 33923535 33923883 -118613376 + L1M5 LINE L1 4241 4642 -1504 6 843 393 261 43 9 chr5 33923962 33924078 -118613181 + ORR1E LTR MaLR 3 122 -237 6 843 304 275 159 8 chr5 33924090 33924222 -118613037 + ORR1E LTR MaLR 199 350 -29 6 843 1389 320 73 95 chr5 33924242 33924763 -118612496 + ORR1E-int LTR MaLR 14 528 -1052 6 843 3227 122 42 22 chr5 33924763 33925307 -118611952 + Lx4A LINE L1 6502 7056 -2 6 843 1389 320 73 95 chr5 33925307 33925318 -118611941 + ORR1E-int LTR MaLR 529 539 -1041 6 843 1314 93 5 10 chr5 33925318 33925513 -118611746 + B2_Mm2 SINE B2 2 195 0 6 843 252 0 0 0 chr5 33925522 33925550 -118611709 + (GAAAA)n Simple_repeat Simple_repeat 1 28 0 6 843 1389 320 73 95 chr5 33925550 33925920 -118611339 + ORR1E-int LTR MaLR 559 905 -675 6 843 226 357 31 0 chr5 33926815 33926913 -118610346 + MLT1J-int LTR MaLR 81 181 -1206 6 843 332 319 46 29 chr5 33928194 33928368 -118608891 + HAL1-2a_MD LINE L1 2320 2496 -528 6 843 303 321 175 50 chr5 33928684 33928884 -118608375 - Tigger7 DNA MER2_type -2198 293 69 6 843 799 227 0 35 chr5 33932921 33933090 -118604169 + RSINE1 SINE B4 2 164 -1 6 843 339 25 0 0 chr5 33933090 33933130 -118604129 + (GA)n Simple_repeat Simple_repeat 2 41 0 6 843 382 293 0 39 chr5 33933135 33933238 -118604021 + RSINE1 SINE B4 31 129 -36 6 843 351 0 0 0 chr5 33933258 33933297 -118603962 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 843 456 203 47 39 chr5 33933448 33933576 -118603683 + L1MB5 LINE L1 6029 6157 -17 6 843 555 289 126 8 chr5 33933907 33934169 -118603090 + L1MB2 LINE L1 5615 5907 -264 6 843 638 214 50 0 chr5 33934221 33934361 -118602898 + B1_Mus1 SINE Alu 1 147 -1 6 843 1188 120 16 0 chr5 33934937 33935121 -118602138 + B2_Mm2 SINE B2 1 187 -8 6 843 204 40 0 0 chr5 33935121 33935146 -118602113 + (GA)n Simple_repeat Simple_repeat 2 26 0 6 843 250 312 0 20 chr5 33935321 33935419 -118601840 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 843 601 331 30 4 chr5 33935828 33936095 -118601164 + L1M5 LINE L1 2993 3266 -2880 6 843 522 222 111 0 chr5 33936944 33937070 -118600189 + ID_B1 SINE B4 84 223 -1 6 843 950 120 11 11 chr5 33937079 33937256 -118600003 + (GAA)n Simple_repeat Simple_repeat 3 179 0 6 843 225 0 0 0 chr5 33937256 33937281 -118599978 + (CGA)n Simple_repeat Simple_repeat 1 25 0 6 843 536 308 12 49 chr5 33937312 33937476 -118599783 + RSINE1 SINE B4 8 165 0 6 843 1070 228 5 0 chr5 33937556 33937758 -118599501 - B3 SINE B2 -13 203 1 6 843 322 232 54 38 chr5 33937811 33937965 -118599294 - B3 SINE B2 -5 190 40 6 843 368 268 31 10 chr5 33938008 33938106 -118599153 - PB1D10 SINE Alu -13 104 5 6 843 277 323 39 0 chr5 33938117 33938247 -118599012 - L1M5 LINE L1 -2627 3519 3385 6 843 1111 221 46 85 chr5 33938345 33938735 -118598524 + MTE2a LTR MaLR 3 377 -2 6 843 780 185 25 25 chr5 33938848 33939009 -118598250 + B2_Mm2 SINE B2 1 161 -34 6 843 792 217 18 12 chr5 33939046 33939214 -118598045 - B3 SINE B2 -38 178 10 6 843 277 248 184 0 chr5 33939335 33939460 -118597799 - B1F SINE Alu 0 149 2 6 843 408 374 52 6 chr5 33939566 33939738 -118597521 - L1M5 LINE L1 -3047 3099 2920 6 843 304 207 17 0 chr5 33939840 33939898 -118597361 - ID SINE ID -139 85 27 6 843 420 335 75 9 chr5 33939865 33940068 -118597191 - ZP3AR Satellite Satellite -2 216 1 6 843 739 245 15 36 chr5 33940221 33940416 -118596843 - B3A SINE B2 -6 192 2 6 843 583 193 213 38 chr5 33941490 33941673 -118595586 + B3 SINE B2 1 215 -1 6 843 253 219 0 0 chr5 33942737 33942801 -118594458 + A-rich Low_complexity Low_complexity 1 64 0 6 843 252 0 0 0 chr5 33943752 33943780 -118593479 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 6 843 409 297 26 43 chr5 33943782 33943898 -118593361 - ID_B1 SINE B4 -27 197 84 6 843 712 116 96 44 chr5 33945717 33945852 -118591407 - B1_Mur2 SINE Alu -1 148 7 6 843 899 230 52 65 chr5 33946687 33946919 -118590340 + B4A SINE B4 1 229 -63 6 843 1626 178 96 25 chr5 33946919 33947316 -118589943 + Lx9 LINE L1 6903 7327 -317 6 843 632 128 111 33 chr5 33947313 33947466 -118589793 + Lx9 LINE L1 7473 7637 -7 6 843 22 0 0 0 chr5 33947472 33947494 -118589765 + AT_rich Low_complexity Low_complexity 1 22 0 6 105 916 135 7 39 chr5 33947502 33947656 -118589603 + B1_Mur3 SINE Alu 1 149 0 6 844 217 233 0 16 chr5 33947730 33947791 -118589468 + A-rich Low_complexity Low_complexity 6 65 0 6 844 296 346 94 36 chr5 33949182 33949320 -118587939 + B4 SINE B4 66 211 -81 7 844 570 233 48 26 chr5 33949208 33949346 -118587913 + B1_Mur1 SINE Alu 7 144 -3 7 844 181 175 175 0 chr5 33949850 33949890 -118587369 - L2b LINE L2 -94 3281 3235 7 844 815 171 64 0 chr5 33951032 33951172 -118586087 - B1_Mur2 SINE Alu 0 149 1 7 844 278 304 35 26 chr5 33951419 33951534 -118585725 + B1F SINE Alu 1 116 -33 7 844 22 80 0 0 chr5 33953254 33953304 -118583955 + AT_rich Low_complexity Low_complexity 1 50 0 7 844 513 282 99 0 chr5 33953321 33953463 -118583796 - RSINE1 SINE B4 -7 158 3 7 844 879 203 120 0 chr5 33953637 33953829 -118583430 + B3 SINE B2 2 216 0 7 844 249 306 87 58 chr5 33954027 33954131 -118583128 + B4 SINE B4 76 182 -110 7 844 201 74 0 0 chr5 33954142 33954169 -118583090 + (CCAA)n Simple_repeat Simple_repeat 1 27 0 7 844 395 282 113 107 chr5 33954169 33954328 -118582931 + ID_B1 SINE B4 81 240 -52 7 844 670 139 203 8 chr5 33956068 33956191 -118581068 + B1_Mur4 SINE Alu 2 148 -2 7 844 297 0 0 0 chr5 33956199 33956232 -118581027 + (T)n Simple_repeat Simple_repeat 1 33 0 7 844 1238 48 0 13 chr5 33956232 33956381 -118580878 - B1_Mus2 SINE Alu 0 147 1 7 844 317 214 14 0 chr5 33956384 33956454 -118580805 + Charlie5 DNA MER1_type 2255 2325 -299 7 844 701 222 7 14 chr5 33956729 33956875 -118580384 + B1_Mur1 SINE Alu 3 147 -2 7 844 25 0 0 0 chr5 33956887 33956912 -118580347 + AT_rich Low_complexity Low_complexity 1 25 0 7 844 1054 143 35 41 chr5 33957668 33957689 -118579570 + URR1B DNA MER1_type 30 143 -82 7 844 361 271 79 74 chr5 33957689 33957780 -118579479 - CYRA11_Mm Unknown Y-chromosome -272 345 258 7 844 1657 32 0 0 chr5 33957780 33957967 -118579292 + B2_Mm1a SINE B2 1 187 -6 7 844 1054 143 35 41 chr5 33957967 33958051 -118579208 + URR1B DNA MER1_type 144 225 0 7 844 361 271 79 74 chr5 33958051 33958078 -118579181 - CYRA11_Mm Unknown Y-chromosome -360 257 142 7 844 543 255 58 7 chr5 33959777 33959931 -118577328 - B3A SINE B2 0 198 37 7 844 595 217 42 0 chr5 33959939 33960059 -118577200 - B1_Mm SINE Alu -11 136 12 7 844 228 125 0 0 chr5 33960094 33960134 -118577125 - B3 SINE B2 -175 41 2 7 844 30 27 0 0 chr5 33960209 33960246 -118577013 + AT_rich Low_complexity Low_complexity 1 37 0 7 844 322 258 185 4 chr5 33960466 33960715 -118576544 + L1MC4a LINE L1 7253 7546 -336 7 844 1025 215 24 5 chr5 33960725 33960935 -118576324 + B3 SINE B2 3 216 0 7 844 308 224 51 26 chr5 33961306 33961384 -118575875 + ID4 SINE ID 1 80 -3 7 844 385 200 78 0 chr5 33961422 33961512 -118575747 - MLT1C LTR MaLR -368 99 3 7 844 222 148 0 0 chr5 33961587 33961641 -118575618 + (A)n Simple_repeat Simple_repeat 1 54 0 7 844 566 212 54 36 chr5 33962529 33962695 -118574564 - MLT1C LTR MaLR -257 210 42 7 844 621 192 36 51 chr5 33962693 33962830 -118574429 - B1_Mur1 SINE Alu -7 142 8 7 844 829 253 60 5 chr5 33962876 33963042 -118574217 + B3 SINE B2 1 166 -50 7 844 360 0 0 0 chr5 33963042 33963082 -118574177 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 844 829 253 60 5 chr5 33963082 33963114 -118574145 + B3 SINE B2 167 209 -7 7 844 544 266 72 0 chr5 33963132 33963271 -118573988 - RSINE1 SINE B4 -14 151 3 7 844 340 328 24 40 chr5 33964670 33964794 -118572465 + PB1 SINE Alu 1 122 -5 7 844 964 217 5 24 chr5 33964851 33965063 -118572196 + B3 SINE B2 3 210 -6 7 844 426 255 71 10 chr5 33965097 33965196 -118572063 + RSINE1 SINE B4 4 108 -57 7 844 2372 123 67 44 chr5 33965197 33965606 -118571653 - RMER4A LTR ERVK 0 466 48 7 844 605 176 129 58 chr5 33965606 33965745 -118571514 - B1_Mur3 SINE Alu 0 149 1 7 844 2372 123 67 44 chr5 33965745 33965769 -118571490 - RMER4A LTR ERVK -419 47 23 7 844 1171 75 0 0 chr5 33965770 33965916 -118571343 + B1_Mus2 SINE Alu 2 147 0 7 844 379 284 24 22 chr5 33966236 33966411 -118570848 + MLT1F1 LTR MaLR 411 668 -12 7 844 207 0 0 0 chr5 33966845 33966868 -118570391 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 7 844 285 89 0 0 chr5 33966939 33966984 -118570275 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 7 844 715 171 48 35 chr5 33967010 33967155 -118570104 + B1_Mus1 SINE Alu 1 147 -1 7 844 1473 70 5 0 chr5 33967157 33967342 -118569917 + B2_Mm1a SINE B2 1 186 -7 7 844 212 300 0 41 chr5 33967382 33967455 -118569804 + BC1_Mm scRNA scRNA 34 103 -49 7 844 258 299 39 79 chr5 33968243 33968421 -118568838 + MLT1A1 LTR MaLR 182 352 -56 7 844 293 351 43 50 chr5 33968767 33968908 -118568351 + B4 SINE B4 65 204 -88 7 844 727 182 16 0 chr5 33968800 33968926 -118568333 + B1_Mur4 SINE Alu 7 134 -16 7 844 554 244 35 0 chr5 33968935 33969070 -118568189 + B1_Mus1 SINE Alu 4 149 0 7 844 246 267 196 18 chr5 33969094 33969319 -118567940 + L1MC LINE L1 4004 4268 -1878 7 844 1109 206 5 5 chr5 33969328 33969533 -118567726 + B3 SINE B2 2 206 -10 7 844 235 133 22 0 chr5 33969655 33969700 -118567559 + L1MC2 LINE L1 6283 6328 -16 7 844 331 345 9 0 chr5 33969701 33969814 -118567445 + PB1D10 SINE Alu 3 116 -1 7 844 860 176 0 39 chr5 33969828 33969982 -118567277 - B1_Mur4 SINE Alu 0 150 3 7 844 21 0 0 0 chr5 33969997 33970018 -118567241 + AT_rich Low_complexity Low_complexity 1 21 0 7 844 360 0 0 0 chr5 33970127 33970167 -118567092 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 844 314 265 0 0 chr5 33970222 33970290 -118566969 + B1_Mus1 SINE Alu 1 68 -80 7 844 516 242 0 0 chr5 33970311 33970443 -118566816 + A-rich Low_complexity Low_complexity 1 132 0 7 844 805 250 20 0 chr5 33970451 33970647 -118566612 + B3 SINE B2 2 201 -15 7 844 562 226 0 21 chr5 33972674 33972807 -118564452 - B1_Mur4 SINE Alu 0 120 1 7 844 423 262 26 0 chr5 33974628 33974744 -118562515 + PB1D10 SINE Alu 17 142 -7 7 844 23 0 0 0 chr5 33974929 33974952 -118562307 + AT_rich Low_complexity Low_complexity 1 23 0 7 844 1039 178 94 0 chr5 33974952 33975143 -118562116 - B3 SINE B2 -7 209 1 7 844 389 278 120 99 chr5 33975267 33975570 -118561689 + ORR1E LTR MaLR 8 317 -53 7 844 827 265 49 68 chr5 33975625 33975743 -118561516 + MT2B LTR ERVL 1 118 -415 7 844 1043 86 135 0 chr5 33975743 33975906 -118561353 - B2_Mm2 SINE B2 -9 186 2 7 844 1030 259 40 67 chr5 33975906 33976280 -118560979 + MT2B LTR ERVL 119 599 -2 7 844 272 204 36 18 chr5 33976289 33976344 -118560915 - B3 SINE B2 -86 112 57 7 844 1212 54 0 13 chr5 33976584 33976733 -118560526 - B1_Mus2 SINE Alu 0 147 1 7 844 3382 38 2 2 chr5 33976761 33977156 -118560103 - MTA_Mm LTR MaLR -1 395 1 7 844 1114 71 7 0 chr5 33977170 33977311 -118559948 - B1_Mus1 SINE Alu -2 146 5 7 844 1310 106 39 0 chr5 33977630 33977810 -118559449 - B2_Mm2 SINE B2 -8 187 1 7 844 2359 166 48 104 chr5 33977856 33978282 -118558977 - RLTR12B LTR ERVK 0 528 89 7 844 1118 87 116 0 chr5 33978282 33978455 -118558804 + B2_Mm2 SINE B2 1 193 -2 7 844 1233 54 0 13 chr5 33978462 33978611 -118558648 + B1_Mus1 SINE Alu 1 147 -1 7 844 2359 166 48 104 chr5 33978611 33978735 -118558524 - RLTR12B LTR ERVK -440 88 1 7 844 629 138 147 0 chr5 33978750 33978859 -118558400 + B1_Mus2 SINE Alu 9 133 -14 7 844 465 208 97 19 chr5 33978904 33979007 -118558252 - B1_Mur1 SINE Alu -2 147 37 7 844 276 242 0 70 chr5 33978949 33979020 -118558239 - 4.5SRNA scRNA scRNA -3 91 26 7 844 553 280 35 14 chr5 33979022 33979167 -118558092 - B3 SINE B2 0 216 69 7 844 323 273 45 9 chr5 33979724 33979835 -118557424 - PB1D10 SINE Alu -2 115 1 7 844 1310 113 16 0 chr5 33979835 33980020 -118557239 - B2_Mm2 SINE B2 -6 189 1 7 844 800 238 77 26 chr5 33980081 33980275 -118556984 + B3 SINE B2 1 204 -12 7 844 189 309 18 18 chr5 33980767 33980823 -118556436 + L3 LINE CR1 3229 3284 -1205 7 844 643 255 41 7 chr5 33980863 33981009 -118556250 + RSINE1 SINE B4 3 153 -12 7 844 335 264 74 46 chr5 33981178 33981295 -118555964 + B1_Mur1 SINE Alu 1 143 -6 7 844 206 235 39 0 chr5 33981374 33981425 -118555834 + L2 LINE L2 2826 2878 -541 7 844 256 333 90 47 chr5 33981682 33981893 -118555366 - MLT1H-int LTR MaLR -477 932 713 7 844 450 258 0 0 chr5 33984118 33984215 -118553044 + B1_Mur4 SINE Alu 28 124 -26 7 844 467 212 12 0 chr5 33984216 33984301 -118552958 + B1_Mus2 SINE Alu 62 147 0 7 844 1197 55 7 0 chr5 33984811 33984957 -118552302 + B1_Mus2 SINE Alu 1 147 0 7 844 537 212 102 0 chr5 33985083 33985201 -118552058 - B3 SINE B2 -86 130 1 7 844 657 0 0 0 chr5 33985210 33985283 -118551976 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 7 844 213 262 0 0 chr5 33985431 33985473 -118551786 + ID SINE ID 4 45 -179 7 844 678 226 23 29 chr5 33985495 33985668 -118551591 + B2_Mm2 SINE B2 5 176 -19 7 844 1188 76 7 0 chr5 33985674 33985819 -118551440 + B1_Mus2 SINE Alu 2 147 0 7 844 201 105 0 50 chr5 33985819 33985859 -118551400 + A-rich Low_complexity Low_complexity 2 39 0 7 844 444 258 61 30 chr5 33985864 33985996 -118551263 + B1_Mm SINE Alu 5 140 -7 7 844 552 211 0 0 chr5 33986633 33986723 -118550536 - B1_Mus2 SINE Alu -55 92 3 7 844 1146 58 0 0 chr5 33986777 33986914 -118550345 + B1_Mus1 SINE Alu 1 137 -11 7 844 566 125 11 11 chr5 33987111 33987200 -118550059 + B1_Mur4 SINE Alu 62 150 0 7 844 220 279 14 14 chr5 33987201 33987270 -118549989 + GA-rich Low_complexity Low_complexity 2 70 0 8 844 554 266 42 7 chr5 33987321 33987465 -118549794 + B3 SINE B2 63 211 -5 8 844 183 42 0 0 chr5 33987475 33987499 -118549760 + (TA)n Simple_repeat Simple_repeat 2 25 0 8 844 813 88 24 20 chr5 33987507 33987654 -118549605 - B1_Mus2 SINE Alu 0 149 1 8 844 1578 37 27 0 chr5 33987680 33987868 -118549391 - B2_Mm1a SINE B2 0 193 1 8 844 505 195 52 26 chr5 33988408 33988524 -118548735 + PB1D9 SINE Alu 2 120 0 8 844 715 249 74 40 chr5 33988923 33989099 -118548160 + B3 SINE B2 2 183 -33 8 844 749 57 245 0 chr5 33989100 33989206 -118548053 + B1_Mus1 SINE Alu 5 136 -12 8 844 508 287 85 0 chr5 33989309 33989438 -118547821 - RSINE1 SINE B4 -12 153 14 8 844 572 271 68 14 chr5 33989523 33989669 -118547590 + ID_B1 SINE B4 4 157 -67 8 844 297 273 44 22 chr5 33989599 33989689 -118547570 + PB1D10 SINE Alu 5 96 -21 8 844 1088 69 7 0 chr5 33989734 33989879 -118547380 + B1_Mus2 SINE Alu 2 147 0 8 844 325 225 113 0 chr5 33989953 33990024 -118547235 - B1_Mur4 SINE Alu 0 150 72 8 844 180 77 0 0 chr5 33990126 33990152 -118547107 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 844 292 264 83 0 chr5 33990178 33990250 -118547009 - RSINE1 SINE B4 -87 78 1 8 844 318 294 36 100 chr5 33990283 33990423 -118546836 - ID_B1 SINE B4 -87 137 7 8 844 245 206 0 149 chr5 33991124 33991198 -118546061 + B4A SINE B4 230 292 0 8 844 216 0 0 0 chr5 33991286 33991310 -118545949 + (T)n Simple_repeat Simple_repeat 1 24 0 8 844 290 261 43 0 chr5 33991346 33991415 -118545844 - MER5A1 DNA MER1_type -83 83 12 8 844 1682 26 0 0 chr5 33991578 33991770 -118545489 + B2_Mm1a SINE B2 2 193 0 8 844 752 171 57 0 chr5 33991841 33991981 -118545278 + B1_Mus1 SINE Alu 1 148 0 8 844 1625 158 158 19 chr5 33992006 33992380 -118544879 + RMER4A LTR ERVK 33 458 -8 8 844 503 227 56 56 chr5 33992781 33992907 -118544352 + B1F2 SINE Alu 17 142 -7 8 844 837 223 120 0 chr5 33993016 33993200 -118544059 + B3 SINE B2 1 206 -10 8 844 607 225 50 8 chr5 33993200 33993321 -118543938 + B1_Mus1 SINE Alu 20 145 -3 8 844 249 330 0 114 chr5 33993418 33993449 -118543810 - PB1D10 SINE Alu 0 117 9 8 844 305 299 0 54 chr5 33993449 33993541 -118543718 - ID_B1 SINE B4 -48 176 90 8 844 270 56 0 0 chr5 33994242 33994278 -118542981 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 844 198 0 0 0 chr5 33997818 33997840 -118539419 + (A)n Simple_repeat Simple_repeat 1 22 0 8 844 336 270 115 57 chr5 33998751 33998774 -118538485 + B4 SINE B4 70 99 -193 8 844 613 219 88 0 chr5 33998774 33998911 -118538348 + B1_Mur4 SINE Alu 2 150 0 8 844 842 94 0 16 chr5 34002282 34002411 -118534848 + MTA_Mm LTR MaLR 120 246 -150 1 844 1062 75 11 20 chr5 34002313 34002524 -118534735 - MTA_Mm LTR MaLR -201 206 1 2 844 1353 39 11 16 chr5 34002580 34002768 -118534491 + MTA_Mm LTR MaLR 202 396 0 3 844 1253 220 56 4 chr5 34002815 34003084 -118534175 + B4A SINE B4 1 283 -9 4 844 347 164 0 82 chr5 34003453 34003526 -118533733 - B1_Mur4 SINE Alu -79 71 5 5 844 261 215 58 81 chr5 34003455 34003541 -118533718 - B4 SINE B4 -139 153 70 6 844 1290 208 16 31 chr5 34004502 34004971 -118532288 - BGLII_B LTR ERVK -15 426 4 7 844 966 87 0 7 chr5 34005108 34005247 -118532012 + B1_Mm SINE Alu 9 146 -1 8 844 313 272 25 0 chr5 34005353 34005434 -118531825 + B4 SINE B4 2 84 -208 9 844 1152 68 0 7 chr5 34005745 34005893 -118531366 + B1_Mus2 SINE Alu 1 147 0 1 844 231 45 21 43 chr5 34005961 34005981 -118531278 + (TAAA)n Simple_repeat Simple_repeat 2 20 0 1 844 1561 58 11 0 chr5 34005981 34006171 -118531088 + B2_Mm1a SINE B2 2 193 0 1 844 231 45 21 43 chr5 34006171 34006197 -118531062 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1 844 598 211 109 0 chr5 34006620 34006748 -118530511 + B1_Mur2 SINE Alu 6 147 -2 1 844 410 303 103 19 chr5 34006748 34006774 -118530485 + B4A SINE B4 91 257 -35 9 844 190 310 0 94 chr5 34006891 34006955 -118530304 + L4 LINE RTE 1170 1227 -802 1 844 207 0 0 0 chr5 34007521 34007544 -118529715 + (T)n Simple_repeat Simple_repeat 1 23 0 1 844 2612 148 38 118 chr5 34007544 34007621 -118529638 - RLTR12B LTR ERVK 0 528 463 1 844 1533 58 5 0 chr5 34007621 34007811 -118529448 - B2_Mm1t SINE B2 -2 191 1 1 844 2612 148 38 118 chr5 34007811 34008307 -118528952 - RLTR12B LTR ERVK -66 462 1 1 844 873 155 0 27 chr5 34008432 34008578 -118528681 + B1_Mur3 SINE Alu 1 142 -7 1 844 271 50 0 24 chr5 34008606 34008642 -118528617 - MTD LTR MaLR -8 411 376 2 844 779 167 87 0 chr5 34008642 34008780 -118528479 + B1_Mur4 SINE Alu 1 150 0 2 844 1099 85 7 0 chr5 34008787 34008928 -118528331 + B1_Mus1 SINE Alu 2 143 -5 2 844 268 186 0 0 chr5 34008928 34008942 -118528317 - MTD LTR MaLR -51 370 357 2 844 275 227 48 76 chr5 34008940 34009045 -118528214 + ID_B1 SINE B4 121 222 -2 2 844 255 345 24 0 chr5 34010095 34010179 -118527080 + Cheshire DNA MER1_type 193 278 -2142 2 844 1573 43 37 0 chr5 34012471 34012659 -118524600 + B2_Mm2 SINE B2 1 195 0 2 844 257 261 59 44 chr5 34012714 34012782 -118524477 + ID4_ SINE ID 1 69 -14 2 844 1838 138 111 3 chr5 34012852 34013149 -118524110 - ORR1A4 LTR MaLR 0 329 1 2 844 831 186 7 20 chr5 34013524 34013672 -118523587 - B1_Mus2 SINE Alu -1 146 1 2 844 689 253 97 5 chr5 34013682 34013877 -118523382 - Lx2B LINE L1 -18 6982 6770 2 844 594 0 0 0 chr5 34014181 34014247 -118523012 + (GGGA)n Simple_repeat Simple_repeat 1 66 0 3 844 534 247 17 90 chr5 34014887 34014943 -118522316 - RMER15 LTR ERVL -382 193 145 3 844 1146 150 86 14 chr5 34014943 34015153 -118522106 - URR1B DNA MER1_type 0 225 1 3 844 534 247 17 90 chr5 34015153 34015274 -118521985 - RMER15 LTR ERVL -431 144 29 3 844 308 305 67 0 chr5 34017577 34017682 -118519577 + MLT1A LTR MaLR 30 141 -233 3 844 496 301 22 34 chr5 34017641 34017691 -118519568 + ID_B1 SINE B4 39 215 -9 3 844 719 171 47 0 chr5 34017691 34017820 -118519439 + B1_Mur2 SINE Alu 6 140 -9 3 844 1670 177 83 145 chr5 34019466 34019852 -118517407 + RLTR18 LTR ERVK 1 372 -244 3 844 1131 58 0 14 chr5 34019852 34019992 -118517267 - B1_Mus2 SINE Alu -9 138 1 3 844 1097 127 78 0 chr5 34019999 34020165 -118517094 - B2_Mm1t SINE B2 -14 179 1 3 844 1670 177 83 145 chr5 34020165 34020253 -118517006 + RLTR18 LTR ERVK 373 453 -163 3 844 231 209 0 0 chr5 34020257 34020300 -118516959 + RLTR18 LTR ERVK 430 472 -144 3 844 1154 61 0 13 chr5 34020313 34020462 -118516797 - B1_Mm SINE Alu 0 147 1 3 844 433 70 12 16 chr5 34020462 34020569 -118516690 - B2_Mm2 SINE B2 0 195 47 4 844 1312 81 40 6 chr5 34020621 34020795 -118516464 - B2_Mm2 SINE B2 -14 181 2 4 844 850 121 64 0 chr5 34020811 34020951 -118516308 - RMER19B LTR ERVK -2 900 752 4 844 657 212 9 53 chr5 34020951 34021172 -118516087 - RMER19B LTR ERVK -557 180 1 4 844 708 178 29 7 chr5 34021172 34021307 -118515952 + RLTR18 LTR ERVK 479 616 0 3 844 184 340 83 28 chr5 34022358 34022467 -118514792 - L3b LINE CR1 -266 216 102 4 844 378 0 0 0 chr5 34023396 34023438 -118513821 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 4 844 749 23 0 1 chr5 34023438 34023534 -118513725 - B2_Mm1t SINE B2 -99 94 1 4 844 2943 187 42 70 chr5 34025131 34026101 -118511158 + RMER19A LTR ERVK 1 882 -20 4 844 1549 33 5 21 chr5 34026103 34026290 -118510969 + B2_Mm1t SINE B2 1 184 -9 4 844 282 220 39 118 chr5 34027940 34028056 -118509203 - MIRm SINE MIR -114 162 51 4 844 259 171 0 0 chr5 34033801 34033841 -118503418 + B3A SINE B2 1 40 -158 4 844 698 191 35 0 chr5 34033841 34033982 -118503277 + B1_Mur3 SINE Alu 4 149 0 5 844 576 180 101 8 chr5 34033992 34034121 -118503138 + B3 SINE B2 70 210 -6 4 844 251 221 44 0 chr5 34034155 34034223 -118503036 + BC1_Mm scRNA scRNA 48 118 -34 5 844 1406 74 16 11 chr5 34034245 34034436 -118502823 + B2_Mm1t SINE B2 1 192 -1 5 844 204 164 17 52 chr5 34036252 34036310 -118500949 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 5 844 1199 48 0 27 chr5 34036312 34036462 -118500797 - B1_Mus1 SINE Alu -2 146 1 5 844 23 0 0 0 chr5 34038238 34038261 -118498998 + GC_rich Low_complexity Low_complexity 1 23 0 5 844 402 21 0 0 chr5 34045421 34045468 -118491791 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 844 887 260 39 10 chr5 34045755 34045961 -118491298 + ID_B1 SINE B4 1 212 -12 5 844 396 0 0 0 chr5 34046039 34046083 -118491176 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 844 312 224 254 27 chr5 34046083 34046193 -118491066 - ID_B1 SINE B4 -10 214 80 5 844 602 295 20 35 chr5 34046216 34046413 -118490846 - B3 SINE B2 -6 210 17 6 844 216 0 0 0 chr5 34046413 34046437 -118490822 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 844 450 0 0 0 chr5 34046459 34046509 -118490750 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 844 183 42 0 0 chr5 34046733 34046757 -118490502 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 844 215 160 39 39 chr5 34047930 34047982 -118489277 + (GCTG)n Simple_repeat Simple_repeat 3 54 0 6 844 208 338 38 0 chr5 34048406 34048486 -118488773 + L2 LINE L2 2764 2846 -573 6 844 253 295 46 71 chr5 34049692 34049889 -118487370 + RMER17A LTR ERVK 326 517 -234 6 844 717 172 30 7 chr5 34050882 34051017 -118486242 - B1_Mur2 SINE Alu -1 148 11 6 844 275 296 54 127 chr5 34050883 34051049 -118486210 - B4 SINE B4 -69 223 70 6 844 733 136 75 34 chr5 34051171 34051320 -118485939 - B1_Mur3 SINE Alu 0 150 1 6 844 752 268 60 32 chr5 34051322 34051538 -118485721 - ID_B1 SINE B4 -1 223 2 7 844 328 284 78 84 chr5 34051577 34051731 -118485528 + B4 SINE B4 67 219 -73 7 844 663 195 73 42 chr5 34051600 34051763 -118485496 + B1_Mur4 SINE Alu 9 311 0 7 844 360 0 0 0 chr5 34052085 34052125 -118485134 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 844 186 43 0 0 chr5 34052128 34052151 -118485108 + (CCA)n Simple_repeat Simple_repeat 2 24 0 7 844 1480 68 11 0 chr5 34052296 34052486 -118484773 + B2_Mm1t SINE B2 2 193 0 7 844 1212 41 0 20 chr5 34052501 34052651 -118484608 + B1_Mus1 SINE Alu 2 148 0 7 844 804 194 156 0 chr5 34052798 34052978 -118484281 + RMER15 LTR ERVL 368 575 0 7 844 579 167 141 8 chr5 34053415 34053426 -118483833 - B1_Mur4 SINE Alu -13 137 127 7 844 387 0 0 0 chr5 34053426 34053469 -118483790 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 844 579 167 141 8 chr5 34053469 34053578 -118483681 - B1_Mur4 SINE Alu -24 126 2 7 844 334 344 8 23 chr5 34053625 34053753 -118483506 + MER117 DNA MER1_type 70 195 -2 8 844 1366 73 79 0 chr5 34053846 34053863 -118483396 - B2_Mm1a SINE B2 -1 192 176 8 844 210 37 0 0 chr5 34053863 34053890 -118483369 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 8 844 1366 73 79 0 chr5 34053890 34054049 -118483210 - B2_Mm1a SINE B2 -18 175 3 8 844 28 29 0 0 chr5 34054640 34054675 -118482584 + AT_rich Low_complexity Low_complexity 1 35 0 8 844 270 164 0 35 chr5 34054696 34054753 -118482506 - B2_Mm2 SINE B2 -94 101 47 8 844 1291 102 17 0 chr5 34054819 34054995 -118482264 - B2_Mm1t SINE B2 -14 179 1 8 844 342 0 0 0 chr5 34055499 34055537 -118481722 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 844 223 178 0 0 chr5 34057408 34057453 -118479806 + T-rich Low_complexity Low_complexity 1 45 0 8 844 846 132 7 14 chr5 34057454 34057592 -118479667 - B1_Mur4 SINE Alu 0 150 14 8 844 434 264 11 109 chr5 34057456 34057630 -118479629 - ID_B1 SINE B4 0 224 68 8 844 351 359 32 14 chr5 34059503 34059723 -118477536 - MER121 Unknown Unknown -129 283 60 9 844 252 331 39 31 chr5 34060090 34060218 -118477041 + L4 LINE RTE 1773 1901 -128 9 844 1263 48 0 0 chr5 34060225 34060372 -118476887 + B1_Mm SINE Alu 1 147 0 9 844 240 35 0 0 chr5 34060372 34060401 -118476858 + (A)n Simple_repeat Simple_repeat 1 29 0 9 844 1295 82 49 0 chr5 34060406 34060589 -118476670 + B2_Mm2 SINE B2 2 193 -2 9 844 201 262 123 61 chr5 34061905 34062019 -118475240 + L4 LINE RTE 1481 1601 -428 9 844 456 300 131 48 chr5 34062080 34062455 -118474804 + MLT1C LTR MaLR 1 406 -61 9 844 1192 48 14 0 chr5 34062508 34062653 -118474606 + B1_Mm SINE Alu 1 147 0 9 844 180 0 0 0 chr5 34062653 34062673 -118474586 + (A)n Simple_repeat Simple_repeat 1 20 0 9 844 22 0 0 0 chr5 34064863 34064885 -118472374 + GC_rich Low_complexity Low_complexity 1 22 0 9 844 258 32 0 0 chr5 34066185 34066216 -118471043 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1 844 258 263 78 69 chr5 34067211 34067313 -118469946 + MIRb SINE MIR 115 217 -51 1 844 346 203 201 0 chr5 34069560 34069652 -118467607 - B1F SINE Alu -2 118 1 1 844 259 253 83 12 chr5 34069810 34069894 -118467365 + Cheshire DNA MER1_type 46 135 -2285 1 844 306 0 0 0 chr5 34071212 34071246 -118466013 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 844 204 297 31 0 chr5 34071458 34071522 -118465737 + L4 LINE RTE 1763 1828 -201 1 845 266 211 14 14 chr5 34078754 34078826 -118458433 + (TA)n Simple_repeat Simple_repeat 2 73 0 1 845 289 222 16 16 chr5 34080166 34080230 -118457029 + B1_Mm SINE Alu 52 115 -32 1 845 753 222 50 22 chr5 34081206 34081386 -118455873 + B3 SINE B2 7 191 -25 1 845 1685 42 0 0 chr5 34081587 34081780 -118455479 - B2_Mm1t SINE B2 0 193 1 1 845 416 165 189 42 chr5 34083164 34083259 -118454000 - PB1D9 SINE Alu -9 111 3 1 845 280 276 81 0 chr5 34083810 34083897 -118453362 - PB1D10 SINE Alu 0 117 24 1 845 200 218 17 52 chr5 34085132 34085190 -118452069 + CT-rich Low_complexity Low_complexity 3 58 0 1 845 590 258 20 48 chr5 34085985 34086186 -118451073 - B3 SINE B2 -2 193 1 1 845 372 312 62 55 chr5 34086628 34086912 -118450347 + B4A SINE B4 4 292 0 1 845 857 232 24 0 chr5 34086943 34087107 -118450152 + B3A SINE B2 1 168 -30 1 845 755 45 134 0 chr5 34087297 34087409 -118449850 + B1_Mus1 SINE Alu 1 127 -21 1 845 245 254 90 0 chr5 34087933 34088000 -118449259 + ID4 SINE ID 8 80 -3 1 845 1209 41 7 0 chr5 34088098 34088243 -118449016 - B1_Mus1 SINE Alu -1 147 2 1 845 215 167 24 0 chr5 34088606 34088648 -118448611 + ID4 SINE ID 1 43 -40 1 845 564 170 56 9 chr5 34089506 34089613 -118447646 + B1_Mus2 SINE Alu 21 132 -15 1 845 354 23 0 0 chr5 34089613 34089656 -118447603 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 845 1122 59 0 0 chr5 34089664 34089800 -118447459 - B1_Mus1 SINE Alu -12 136 1 1 845 738 207 77 24 chr5 34089833 34090001 -118447258 - B3 SINE B2 -13 203 27 1 845 708 265 11 23 chr5 34091752 34091926 -118445333 + B3A SINE B2 27 198 0 1 845 274 286 65 0 chr5 34092059 34092136 -118445123 + PB1D10 SINE Alu 3 84 -33 1 845 390 304 57 21 chr5 34092251 34092392 -118444867 - RSINE1 SINE B4 -17 148 3 1 845 237 307 13 26 chr5 34092423 34092500 -118444759 + PB1D7 SINE Alu 40 115 -5 1 845 621 235 0 93 chr5 34092534 34092684 -118444575 + B1_Mur2 SINE Alu 14 149 0 1 845 314 329 0 0 chr5 34092692 34092774 -118444485 + ID4_ SINE ID 2 83 0 1 845 820 163 31 0 chr5 34092837 34092966 -118444293 - B1_Mus2 SINE Alu -14 133 1 1 845 334 253 25 0 chr5 34092991 34093070 -118444189 + RSINE1 SINE B4 51 131 -34 1 845 936 232 19 10 chr5 34093207 34093412 -118443847 + B3 SINE B2 8 214 -2 1 845 595 110 8 65 chr5 34093412 34093566 -118443693 + Lx3B LINE L1 6795 6940 -41 1 845 936 108 0 0 chr5 34093621 34093760 -118443499 + (TA)n Simple_repeat Simple_repeat 1 139 0 1 845 891 160 21 7 chr5 34093765 34093910 -118443349 + B1_Mus2 SINE Alu 1 147 0 1 845 772 163 13 70 chr5 34094437 34094595 -118442664 + B1_Mur4 SINE Alu 2 150 0 1 845 456 304 67 0 chr5 34094627 34094762 -118442497 - ID_B1 SINE B4 -71 153 10 1 845 213 273 167 0 chr5 34094774 34094840 -118442419 - PB1 SINE Alu -3 124 48 1 845 396 0 0 0 chr5 34095000 34095044 -118442215 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 845 1213 143 63 15 chr5 34095367 34095573 -118441686 + B3 SINE B2 1 216 0 1 845 183 162 0 0 chr5 34095573 34095610 -118441649 + GA-rich Low_complexity Low_complexity 1 37 0 1 845 1945 105 86 3 chr5 34095976 34096300 -118440959 + RMER4B LTR ERVK 1 351 -234 1 845 347 235 20 0 chr5 34096369 34096471 -118440788 + GA-rich Low_complexity Low_complexity 6 109 0 1 845 1518 151 12 12 chr5 34096574 34096829 -118440430 + RMER4B LTR ERVK 322 576 -9 1 845 269 288 61 26 chr5 34097637 34097751 -118439508 + RLTR11A2 LTR ERVK 1 118 -409 1 845 260 293 73 0 chr5 34097752 34097834 -118439425 + BGLII_B LTR ERVK 290 377 -64 1 845 816 300 9 5 chr5 34098022 34098233 -118439026 - B4A SINE B4 -80 212 1 1 845 1170 62 7 7 chr5 34098323 34098470 -118438789 - B1_Mur4 SINE Alu -2 148 2 1 845 229 262 33 0 chr5 34098672 34098733 -118438526 + CT-rich Low_complexity Low_complexity 2 64 0 1 845 650 188 63 35 chr5 34098763 34098785 -118438474 - B1_Mur4 SINE Alu -3 147 119 1 845 1271 48 0 0 chr5 34098785 34098932 -118438327 - B1_Mm SINE Alu 0 147 1 1 845 650 188 63 35 chr5 34098932 34099052 -118438207 - B1_Mur4 SINE Alu -32 118 1 1 845 227 301 42 31 chr5 34099105 34099201 -118438058 - L1MDa LINE L1 -5015 1618 1522 1 845 516 238 61 27 chr5 34099633 34099780 -118437479 - B3 SINE B2 -3 213 62 1 845 717 144 72 0 chr5 34099740 34099865 -118437394 + B1_Mur3 SINE Alu 16 149 0 1 845 348 119 0 0 chr5 34099883 34099942 -118437317 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 1 845 370 307 18 0 chr5 34099952 34100066 -118437193 - B3 SINE B2 -99 117 2 1 845 547 255 6 34 chr5 34100994 34101157 -118436102 + B1_Mur1 SINE Alu 2 137 -13 1 845 311 254 37 96 chr5 34101224 34101285 -118435974 + L1MDa LINE L1 2375 2430 -4203 1 845 1167 68 7 0 chr5 34101285 34101431 -118435828 + B1_Mus2 SINE Alu 1 147 0 1 845 311 271 42 85 chr5 34101431 34101526 -118435733 + L1MDa LINE L1 2431 2501 -4132 1 845 449 274 34 0 chr5 34101853 34101970 -118435289 + B3 SINE B2 96 216 0 1 845 183 80 0 0 chr5 34102274 34102299 -118434960 + (A)n Simple_repeat Simple_repeat 1 25 0 1 845 2524 132 42 42 chr5 34102314 34102789 -118434470 + IAPLTR2_Mm LTR ERVK 1 475 0 1 845 425 292 7 37 chr5 34102869 34103004 -118434255 + ID_B1 SINE B4 73 203 -21 1 845 538 285 0 0 chr5 34102884 34103007 -118434252 + B1F SINE Alu 6 128 -21 1 845 1648 47 0 0 chr5 34103041 34103234 -118434025 + B2_Mm1a SINE B2 1 193 0 1 845 396 175 10 20 chr5 34104007 34104106 -118433153 + GA-rich Low_complexity Low_complexity 3 100 0 1 845 307 342 64 6 chr5 34104590 34104746 -118432513 - MER58B DNA MER1_type 0 341 177 1 845 252 298 78 99 chr5 34104763 34105057 -118432202 - B4A SINE B4 -3 289 2 1 845 878 296 103 23 chr5 34105562 34105691 -118431568 - ORR1E-int LTR MaLR -895 685 555 1 845 647 173 244 17 chr5 34105691 34105729 -118431530 - B3 SINE B2 0 216 182 1 845 225 0 0 0 chr5 34105729 34105754 -118431505 + (TAGG)n Simple_repeat Simple_repeat 4 28 0 1 845 647 173 244 17 chr5 34105754 34105891 -118431368 - B3 SINE B2 -35 181 2 1 845 878 296 103 23 chr5 34105891 34106197 -118431062 - ORR1E-int LTR MaLR -1026 554 216 1 845 778 291 62 19 chr5 34106203 34106462 -118430797 - B4A SINE B4 -5 287 18 1 845 400 254 296 11 chr5 34106455 34106634 -118430625 - ORR1E-int LTR MaLR -1350 230 1 1 845 270 336 130 40 chr5 34106645 34106868 -118430391 - ORR1E LTR MaLR -8 351 109 1 845 816 190 207 0 chr5 34106998 34107177 -118430082 - B3 SINE B2 0 216 1 1 845 21 36 0 0 chr5 34107184 34107212 -118430047 + AT_rich Low_complexity Low_complexity 1 28 0 1 845 1227 48 0 0 chr5 34107213 34107360 -118429899 + B1_Mus1 SINE Alu 2 148 0 1 845 261 276 0 0 chr5 34107427 34107485 -118429774 + PB1D10 SINE Alu 34 91 -26 1 845 541 255 26 66 chr5 34107486 34107637 -118429622 + B1_Mur2 SINE Alu 5 149 0 1 845 1060 197 29 10 chr5 34107649 34107854 -118429405 + B3 SINE B2 7 215 -1 1 845 593 266 26 68 chr5 34108165 34108355 -118428904 - B3A SINE B2 -16 182 1 1 845 806 164 49 14 chr5 34108600 34108742 -118428517 - B1_Mur1 SINE Alu 0 149 3 1 845 250 246 29 0 chr5 34109628 34109697 -118427562 + L1MD3 LINE L1 7757 7827 -168 1 845 454 295 40 40 chr5 34109886 34110133 -118427126 + RLTR15 LTR ERVK 45 291 -68 1 845 1479 191 61 47 chr5 34110458 34110821 -118426438 + ORR1C1 LTR MaLR 11 378 0 1 845 691 214 62 19 chr5 34110823 34110985 -118426274 + ID_B1 SINE B4 56 224 0 1 845 356 0 23 0 chr5 34111235 34111279 -118425980 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 845 1014 235 14 14 chr5 34111489 34111705 -118425554 - B3 SINE B2 0 216 1 1 845 583 235 38 51 chr5 34113494 34113651 -118423608 + RSINE1 SINE B4 3 157 -8 1 845 321 26 0 0 chr5 34113727 34113765 -118423494 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 845 300 230 33 33 chr5 34114776 34114866 -118422393 - RSINE1 SINE B4 -74 91 2 1 845 270 253 24 12 chr5 34114940 34115024 -118422235 - BC1_Mm scRNA scRNA -60 92 8 1 845 644 276 25 13 chr5 34115250 34115408 -118421851 + RSINE1 SINE B4 2 161 -4 1 845 228 67 0 0 chr5 34115423 34115453 -118421806 + (TAAG)n Simple_repeat Simple_repeat 2 31 0 1 845 338 152 30 15 chr5 34115761 34115828 -118421431 + HAL1-3A_ME LINE L1 1979 2046 -812 1 845 494 264 23 31 chr5 34116379 34116508 -118420751 + RSINE1 SINE B4 3 130 -35 1 845 447 19 0 0 chr5 34116524 34116576 -118420683 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 845 618 282 19 0 chr5 34116596 34116752 -118420507 + RSINE1 SINE B4 5 163 -2 1 845 758 209 7 0 chr5 34116796 34116935 -118420324 + B1_Mus2 SINE Alu 1 140 -7 1 845 294 73 0 0 chr5 34116937 34116978 -118420281 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 845 506 271 186 0 chr5 34117120 34117297 -118419962 - B3 SINE B2 -6 210 1 1 845 722 285 53 6 chr5 34117318 34117543 -118419716 + B4A SINE B4 2 237 -55 1 845 1171 54 0 26 chr5 34118463 34118614 -118418645 - B1_Mus1 SINE Alu 0 148 2 2 845 467 189 137 0 chr5 34119076 34119171 -118418088 - PB1D9 SINE Alu -12 108 1 2 845 203 62 94 0 chr5 34119237 34119269 -118417990 + A-rich Low_complexity Low_complexity 2 36 0 2 845 283 272 24 12 chr5 34119278 34119360 -118417899 + ID4_ SINE ID 1 83 0 2 845 312 278 9 118 chr5 34119759 34119775 -118417484 + B4 SINE B4 70 167 -125 2 845 530 122 0 128 chr5 34119775 34119869 -118417390 + PB1D9 SINE Alu 1 82 -38 2 845 1133 86 79 0 chr5 34119869 34120021 -118417238 - B2_Mm2 SINE B2 -31 164 1 2 845 374 274 16 71 chr5 34120775 34120901 -118416358 + PB1D7 SINE Alu 2 120 0 2 845 182 62 31 0 chr5 34120933 34120965 -118416294 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 2 845 217 325 126 24 chr5 34121682 34121817 -118415442 + B2_Mm1t SINE B2 2 153 -40 2 845 387 0 0 0 chr5 34121817 34121860 -118415399 + (CAGG)n Simple_repeat Simple_repeat 1 43 0 2 845 396 0 0 0 chr5 34121860 34121904 -118415355 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 845 217 325 126 24 chr5 34121904 34121934 -118415325 + B2_Mm1t SINE B2 154 184 -9 2 845 362 250 40 0 chr5 34122434 34122510 -118414749 - RSINE1 SINE B4 -34 131 53 2 845 497 270 28 42 chr5 34122884 34123064 -118414195 + B3A SINE B2 16 194 -1 2 845 225 230 90 51 chr5 34123066 34123144 -118414115 - MER21B LTR ERV1 -287 576 496 2 845 291 231 261 17 chr5 34123082 34123201 -118414058 - MER77 LTR ERVL -17 590 443 2 845 283 292 90 7 chr5 34123665 34123820 -118413439 + L1MC3 LINE L1 7159 7326 -459 2 845 480 230 84 13 chr5 34123835 34123989 -118413270 + L1MC3 LINE L1 7378 7542 -243 2 845 442 206 175 0 chr5 34124494 34124620 -118412639 - B1_Mur1 SINE Alu -1 148 1 2 845 7108 92 10 95 chr5 34126549 34127025 -118410234 + Lx LINE L1 5322 5798 -85 2 845 703 132 35 9 chr5 34127025 34127140 -118410119 + PB1D9 SINE Alu 3 120 0 2 845 7108 91 19 79 chr5 34127140 34127991 -118409268 + Lx LINE L1 5799 6590 -64 2 845 3443 30 2 10 chr5 34127991 34128390 -118408869 + MTA_Mm LTR MaLR 1 396 0 2 845 8995 41 13 2 chr5 34128390 34129476 -118407783 + MTA_Mm-int LTR MaLR 1 1098 0 2 845 3478 28 2 2 chr5 34129476 34129872 -118407387 + MTA_Mm LTR MaLR 1 396 0 2 845 7108 91 19 79 chr5 34129872 34129936 -118407323 + Lx LINE L1 6591 6647 -7 2 845 581 112 22 0 chr5 34130422 34130505 -118406754 - RLTR25A LTR ERVK 0 1103 1019 2 845 1688 221 133 21 chr5 34130505 34130898 -118406361 + RLTR20C LTR ERVK 1 432 -102 2 845 414 0 0 0 chr5 34130898 34130944 -118406315 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 845 1688 221 133 21 chr5 34130944 34131030 -118406229 + RLTR20C LTR ERVK 433 533 -1 2 845 972 137 253 49 chr5 34131030 34131103 -118406156 - RLTR25A LTR ERVK -79 1024 941 2 845 492 18 0 0 chr5 34131103 34131160 -118406099 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 845 270 0 0 0 chr5 34131160 34131189 -118406070 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 845 972 137 253 49 chr5 34131189 34131359 -118405900 - RLTR25A LTR ERVK -163 940 731 2 845 4318 147 82 74 chr5 34131364 34132233 -118405026 + RMER19B LTR ERVK 2 877 -25 2 845 1407 226 32 62 chr5 34132113 34132526 -118404733 - RMER19B LTR ERVK -528 374 1 2 845 5724 127 38 23 chr5 34132527 34133115 -118404144 + MYSERV6-int LTR ERVK 3013 3606 -5353 2 845 3831 136 152 0 chr5 34133115 34133755 -118403504 - RMER19A LTR ERVK 0 737 1 2 845 5724 127 38 23 chr5 34133755 34133921 -118403338 + MYSERV6-int LTR ERVK 3607 3785 -5174 2 845 3977 166 83 76 chr5 34133921 34134817 -118402442 - RMER19B LTR ERVK 0 902 1 2 845 5724 127 38 23 chr5 34134817 34135064 -118402195 + MYSERV6-int LTR ERVK 3786 4030 -4929 2 845 921 250 88 31 chr5 34135071 34135331 -118401928 + RLTR16 LTR ERVK 24 298 -207 2 845 200 59 29 0 chr5 34135396 34135430 -118401829 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 845 1228 49 0 0 chr5 34135430 34135574 -118401685 - B1_Mus2 SINE Alu -3 144 1 2 845 6220 221 139 105 chr5 34135792 34136239 -118401020 + MYSERV-int LTR ERVK 3810 4261 -2289 2 845 408 20 0 0 chr5 34136239 34136288 -118400971 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 2 845 6220 221 139 105 chr5 34136288 34136945 -118400314 + MYSERV-int LTR ERVK 4262 4970 -1580 2 845 3055 30 0 85 chr5 34136945 34137344 -118399915 + RLTR10B2 LTR ERVK 1 365 0 2 845 6220 219 122 91 chr5 34137344 34137871 -118399388 + MYSERV-int LTR ERVK 4971 5510 -1040 2 845 941 86 47 0 chr5 34137871 34137999 -118399260 + B1_Mus2 SINE Alu 1 134 -13 2 845 324 0 0 0 chr5 34137999 34138035 -118399224 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 845 6220 221 139 105 chr5 34138035 34138808 -118398451 + MYSERV-int LTR ERVK 5511 6297 -253 2 845 2055 129 16 0 chr5 34138838 34139149 -118398110 - ORR1A3 LTR MaLR -10 316 1 2 845 10775 126 55 79 chr5 34139149 34141161 -118396098 - ORR1A3-int LTR MaLR 0 1963 1 2 845 1560 156 103 57 chr5 34141165 34141465 -118395794 - ORR1A3 LTR MaLR -8 318 5 2 845 1072 147 16 94 chr5 34141472 34141728 -118395531 + MYSERV6-int LTR ERVK 8723 8958 -1 2 845 1141 284 30 51 chr5 34141755 34142222 -118395037 + RLTR12B LTR ERVK 47 503 -25 2 845 1177 69 7 0 chr5 34142412 34142557 -118394702 + B1_Mus1 SINE Alu 2 147 -1 2 845 4132 165 18 30 chr5 34142579 34143361 -118393898 + MYSERV6-int LTR ERVK 2504 3724 -1536 2 845 2395 219 142 18 chr5 34143361 34144017 -118393242 + RMER19A LTR ERVK 1 737 0 2 845 4132 156 14 30 chr5 34144017 34144115 -118393144 + MYSERV6-int LTR ERVK 3174 3264 -5695 2 845 444 256 52 85 chr5 34144154 34144490 -118392769 + RLTR15 LTR ERVK 30 344 -15 2 845 1109 109 15 71 chr5 34145493 34145691 -118391568 + B2_Mm2 SINE B2 7 193 -2 2 845 2738 144 43 40 chr5 34145874 34146385 -118390874 - RLTR19 LTR ERVK -3 496 1 2 845 2556 263 57 48 chr5 34146553 34147394 -118389865 + MYSERV6-int LTR ERVK 3750 4598 -1952 2 845 354 165 21 96 chr5 34147413 34147507 -118389752 + MYSERV6-int LTR ERVK 4653 4739 -1811 2 845 586 260 67 19 chr5 34147570 34147778 -118389481 - RLTR15 LTR ERVK -93 266 49 2 845 662 188 86 0 chr5 34147852 34147969 -118389290 + B3 SINE B2 1 127 -89 2 845 237 275 44 37 chr5 34148109 34148152 -118389107 + ORR1B1-int LTR MaLR 603 646 -863 2 845 788 41 0 0 chr5 34148152 34148250 -118389009 + B1_Mus1 SINE Alu 1 98 -50 2 845 280 271 11 34 chr5 34148198 34148286 -118388973 + RLTR25A LTR ERVK 522 607 -496 2 845 331 190 1 17 chr5 34148289 34148370 -118388889 - MYSERV6-int LTR ERVK -208 8751 8682 2 845 2405 155 67 2 chr5 34148429 34148862 -118388397 - RMER4A LTR ERVK 0 466 6 2 845 993 251 22 59 chr5 34148985 34149341 -118387918 - RLTR15 LTR ERVK -16 343 1 2 845 1226 54 0 0 chr5 34149348 34149496 -118387763 - B1_Mus1 SINE Alu 0 148 1 2 845 1422 72 0 11 chr5 34149513 34149695 -118387564 - B2_Mm2 SINE B2 -14 181 2 2 845 255 297 78 19 chr5 34150030 34150133 -118387126 - PB1D10 SINE Alu 0 117 9 2 845 503 190 58 39 chr5 34150273 34150377 -118386882 + B1_Mur2 SINE Alu 32 137 -12 2 845 400 111 0 60 chr5 34150370 34150437 -118386822 - B1_Mus2 SINE Alu -5 142 80 2 845 1697 132 20 0 chr5 34150436 34150687 -118386572 - MTC LTR MaLR -55 366 111 2 845 816 11 0 0 chr5 34150717 34150810 -118386449 + (TTC)n Simple_repeat Simple_repeat 1 93 0 2 845 1192 68 0 0 chr5 34150812 34150959 -118386300 - B1_Mus1 SINE Alu -1 147 1 2 845 883 158 47 32 chr5 34150969 34151159 -118386100 - B2_Mm2 SINE B2 -1 194 2 2 845 266 50 25 0 chr5 34151165 34151205 -118386054 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 2 845 810 145 23 0 chr5 34151207 34151338 -118385921 - B1_Mm SINE Alu 0 147 14 2 845 582 274 22 0 chr5 34151342 34151477 -118385782 + RSINE1 SINE B4 28 165 0 2 845 527 79 118 0 chr5 34151503 34151579 -118385680 - MTB_Mm LTR MaLR 0 407 323 2 845 1672 21 0 0 chr5 34151580 34151772 -118385487 + MTB LTR MaLR 209 400 0 2 845 7427 94 3 67 chr5 34151772 34152945 -118384314 + MTB-int LTR MaLR 1 1098 0 2 845 2482 61 106 22 chr5 34152945 34153314 -118383945 + MTB LTR MaLR 1 400 0 2 845 898 230 30 5 chr5 34153344 34153545 -118383714 - B3 SINE B2 -8 208 3 2 845 180 0 0 0 chr5 34153860 34153880 -118383379 + (A)n Simple_repeat Simple_repeat 1 20 0 2 845 438 248 96 43 chr5 34154138 34154277 -118382982 - B1_Mus2 SINE Alu -1 149 1 2 845 1069 131 53 32 chr5 34154300 34154489 -118382770 - B2_Mm2 SINE B2 0 195 3 2 845 459 182 175 40 chr5 34154500 34154626 -118382633 - B1_Mur4 SINE Alu -7 143 1 2 845 341 245 48 19 chr5 34154631 34154735 -118382524 + MLT1F LTR MaLR 441 547 -1 2 845 306 296 12 0 chr5 34155000 34155081 -118382178 - ID4_ SINE ID 0 83 2 2 845 322 239 0 43 chr5 34155119 34155189 -118382070 - ID4 SINE ID -8 75 9 2 845 3634 154 116 86 chr5 34155189 34156025 -118381234 + RMER19B LTR ERVK 1 861 -41 2 845 240 291 38 0 chr5 34156235 34156314 -118380945 - B1_Mus1 SINE Alu -66 82 1 2 845 233 271 84 73 chr5 34156350 34156416 -118380843 + L1MD3 LINE L1 7788 7849 -146 2 845 270 227 93 0 chr5 34156416 34156491 -118380768 - ID4 SINE ID 0 83 2 2 845 233 271 84 73 chr5 34156491 34156603 -118380656 + L1MD3 LINE L1 7850 7968 -27 2 845 1191 189 51 24 chr5 34156614 34156869 -118380390 + Lx5 LINE L1 6789 7050 0 2 845 572 282 32 0 chr5 34156889 34157045 -118380214 + RSINE1 SINE B4 3 163 -2 2 845 27 0 0 0 chr5 34157048 34157075 -118380184 + AT_rich Low_complexity Low_complexity 1 27 0 2 845 493 194 11 0 chr5 34157075 34157168 -118380091 - B1F2 SINE Alu -2 147 54 2 845 659 172 101 29 chr5 34157175 34157313 -118379946 - B1_Mur4 SINE Alu -2 148 1 2 845 626 222 80 74 chr5 34157315 34157490 -118379769 - B3A SINE B2 -19 176 1 2 845 675 240 7 7 chr5 34157512 34157659 -118379600 + B1_Mus1 SINE Alu 1 147 -1 2 845 384 229 80 27 chr5 34157692 34157804 -118379455 + RSINE1 SINE B4 47 164 -1 2 845 531 0 0 0 chr5 34158069 34158128 -118379131 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 2 845 864 53 0 9 chr5 34158130 34158245 -118379014 - B1_Mus2 SINE Alu 0 147 34 2 845 1022 83 8 0 chr5 34158246 34158379 -118378880 + B1_Mus2 SINE Alu 1 134 -13 2 845 362 20 40 0 chr5 34158379 34158429 -118378830 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 2 845 1195 94 60 6 chr5 34158456 34158638 -118378621 - B2_Mm2 SINE B2 0 195 4 2 845 252 247 61 61 chr5 34159304 34159403 -118377856 + MLT1C LTR MaLR 6 104 -363 2 845 279 97 88 62 chr5 34159749 34159828 -118377431 + B1F SINE Alu 23 147 -2 2 845 766 201 68 25 chr5 34159856 34160019 -118377240 + B3 SINE B2 47 216 0 2 845 681 282 33 16 chr5 34160027 34160211 -118377048 + B3A SINE B2 4 190 -8 2 845 687 276 0 27 chr5 34160212 34160361 -118376898 - B1_Mur3 SINE Alu 0 149 5 2 845 21 36 0 0 chr5 34160368 34160396 -118376863 + AT_rich Low_complexity Low_complexity 1 28 0 3 845 181 185 86 69 chr5 34160693 34160751 -118376508 - L3 LINE CR1 -3549 940 882 3 845 450 0 0 0 chr5 34161071 34161121 -118376138 + (T)n Simple_repeat Simple_repeat 1 50 0 3 845 23 68 0 0 chr5 34162972 34163016 -118374243 + GC_rich Low_complexity Low_complexity 1 44 0 3 845 21 0 0 0 chr5 34163209 34163230 -118374029 + GC_rich Low_complexity Low_complexity 1 21 0 3 845 189 94 0 0 chr5 34163306 34163338 -118373921 + (CGG)n Simple_repeat Simple_repeat 2 33 0 3 845 24 32 0 0 chr5 34163344 34163375 -118373884 + GC_rich Low_complexity Low_complexity 1 31 0 3 845 200 171 24 24 chr5 34163401 34163485 -118373774 + (CCG)n Simple_repeat Simple_repeat 1 84 0 3 845 21 0 0 0 chr5 34163770 34163791 -118373468 + GC_rich Low_complexity Low_complexity 1 21 0 3 845 22 0 0 0 chr5 34163823 34163845 -118373414 + GC_rich Low_complexity Low_complexity 1 22 0 3 845 21 0 0 0 chr5 34163851 34163872 -118373387 + GC_rich Low_complexity Low_complexity 1 21 0 3 845 261 0 0 0 chr5 34164672 34164701 -118372558 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 845 427 285 94 57 chr5 34165665 34165877 -118371382 - ID_B1 SINE B4 -2 222 3 3 845 470 61 0 15 chr5 34166837 34166904 -118370355 + (TTTTC)n Simple_repeat Simple_repeat 3 68 0 3 845 516 156 0 0 chr5 34166903 34166993 -118370266 + CT-rich Low_complexity Low_complexity 3 92 0 3 845 22 70 0 0 chr5 34167012 34167055 -118370204 + AT_rich Low_complexity Low_complexity 1 43 0 3 845 216 0 0 0 chr5 34167062 34167086 -118370173 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 845 779 295 0 0 chr5 34167087 34167260 -118369999 - B3A SINE B2 -25 173 1 3 845 184 393 77 0 chr5 34167661 34167778 -118369481 + L2a LINE L2 3004 3129 -297 3 845 720 182 38 0 chr5 34167818 34167950 -118369309 + B1_Mur1 SINE Alu 12 148 -1 3 845 1204 56 0 0 chr5 34168331 34168475 -118368784 - B1_Mus2 SINE Alu -3 144 1 3 845 540 302 29 91 chr5 34168509 34168684 -118368575 - RSINE1 SINE B4 0 165 2 3 845 720 187 157 16 chr5 34169077 34169262 -118367997 - B3 SINE B2 -5 211 1 3 845 216 97 0 0 chr5 34169680 34169711 -118367548 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 845 242 302 16 0 chr5 34169729 34169792 -118367467 - RSINE1 SINE B4 -33 132 69 3 845 364 233 126 0 chr5 34169836 34169939 -118367320 - B1_Mus2 SINE Alu 0 147 32 3 845 21 0 0 0 chr5 34169956 34169977 -118367282 + AT_rich Low_complexity Low_complexity 1 21 0 3 845 611 231 60 60 chr5 34169980 34170196 -118367063 - B3 SINE B2 0 216 1 3 845 279 0 0 0 chr5 34170417 34170448 -118366811 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 3 845 382 287 42 42 chr5 34170450 34170592 -118366667 - B1F2 SINE Alu -7 142 1 3 845 25 0 0 0 chr5 34170609 34170634 -118366625 + AT_rich Low_complexity Low_complexity 1 25 0 3 845 267 31 0 0 chr5 34170657 34170689 -118366570 + (T)n Simple_repeat Simple_repeat 1 32 0 3 845 1198 42 0 0 chr5 34170694 34170836 -118366423 - B1_Mus1 SINE Alu -5 143 2 3 845 235 156 0 135 chr5 34170912 34170964 -118366295 - PB1D9 SINE Alu -64 56 12 3 845 467 242 55 113 chr5 34170971 34171209 -118366050 - RMER2 LTR ERV1 0 567 344 3 845 25 31 0 0 chr5 34171520 34171552 -118365707 + AT_rich Low_complexity Low_complexity 1 32 0 3 845 615 281 7 40 chr5 34171552 34171704 -118365555 - ID_B1 SINE B4 -74 150 4 3 845 1210 54 0 0 chr5 34171854 34172001 -118365258 + B1_Mus1 SINE Alu 2 148 0 3 845 285 75 0 0 chr5 34172001 34172041 -118365218 + (A)n Simple_repeat Simple_repeat 1 40 0 3 845 1379 75 27 0 chr5 34172508 34172694 -118364565 - B2_Mm1t SINE B2 0 193 3 3 845 716 186 13 40 chr5 34173247 34173398 -118363861 - B1F2 SINE Alu 0 149 3 3 845 1112 180 48 14 chr5 34173553 34173762 -118363497 + B3 SINE B2 1 216 0 3 845 317 350 7 28 chr5 34173786 34173930 -118363329 - RSINE1 SINE B4 0 165 25 3 845 23 54 0 0 chr5 34173953 34173990 -118363269 + AT_rich Low_complexity Low_complexity 1 37 0 3 845 767 242 82 5 chr5 34174122 34174317 -118362942 - B3 SINE B2 -6 210 1 3 845 242 185 111 0 chr5 34174323 34174377 -118362882 - B1_Mur3 SINE Alu -5 144 85 3 845 710 231 200 21 chr5 34174422 34174612 -118362647 - B4 SINE B4 -66 226 3 3 845 756 158 0 0 chr5 34174675 34174808 -118362451 + CT-rich Low_complexity Low_complexity 2 134 0 3 845 621 202 54 8 chr5 34174809 34174939 -118362320 - B1_Mur4 SINE Alu -14 136 1 3 845 324 120 0 0 chr5 34174957 34175007 -118362252 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 3 845 846 210 11 37 chr5 34175011 34175199 -118362060 - B3 SINE B2 -33 183 1 3 845 1082 73 0 7 chr5 34175240 34175378 -118361881 + B1_Mm SINE Alu 2 138 -9 3 845 306 0 0 0 chr5 34175378 34175412 -118361847 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 845 386 317 95 20 chr5 34175495 34175643 -118361616 + MER5A DNA MER1_type 8 166 -23 3 845 641 206 81 0 chr5 34175770 34175906 -118361353 - B1_Mus2 SINE Alu 0 147 1 3 845 692 181 249 34 chr5 34175912 34176089 -118361170 - B3 SINE B2 0 216 2 3 845 329 279 58 53 chr5 34176380 34176511 -118360748 + B3A SINE B2 2 141 -52 3 845 595 301 108 0 chr5 34176755 34176941 -118360318 + B3 SINE B2 1 206 -10 3 845 998 121 14 0 chr5 34176954 34177094 -118360165 + B1_Mur4 SINE Alu 1 142 -8 3 845 875 193 127 0 chr5 34177125 34177306 -118359953 + B3 SINE B2 3 206 -10 3 845 289 152 0 5 chr5 34177884 34177939 -118359320 + RMER19B LTR ERVK 856 902 0 3 845 745 20 0 30 chr5 34177970 34178071 -118359188 + (TTCCC)n Simple_repeat Simple_repeat 3 100 0 3 845 329 241 78 61 chr5 34178089 34178204 -118359055 - PB1D7 SINE Alu 0 120 4 3 845 694 188 8 0 chr5 34178210 34178327 -118358932 - B1_Mur2 SINE Alu -31 118 1 3 845 338 208 14 14 chr5 34178563 34178636 -118358623 - ID4 SINE ID -10 73 1 3 845 25 0 0 0 chr5 34178641 34178666 -118358593 + AT_rich Low_complexity Low_complexity 1 25 0 3 845 270 118 149 11 chr5 34178672 34178766 -118358493 - Lx9 LINE L1 -22 7622 7516 3 845 488 285 85 105 chr5 34178769 34179016 -118358243 - B4 SINE B4 -1 291 50 3 845 551 168 91 16 chr5 34179065 34179186 -118358073 - B1_Mur3 SINE Alu -19 130 1 3 845 848 263 37 37 chr5 34179435 34179783 -118357476 - RLTR15 LTR ERVK -9 350 3 3 845 321 246 4 32 chr5 34179814 34179898 -118357361 + ID_B1 SINE B4 86 162 -62 3 845 644 241 11 40 chr5 34180253 34180430 -118356829 - Lx8 LINE L1 -233 7240 7069 3 845 404 254 71 32 chr5 34180505 34180659 -118356600 - B3A SINE B2 -10 183 10 3 845 678 133 35 9 chr5 34180716 34180830 -118356429 - B1_Mus1 SINE Alu -1 147 31 3 845 427 254 59 8 chr5 34180855 34180974 -118356285 + B1_Mur2 SINE Alu 22 146 -3 3 845 560 278 27 34 chr5 34180979 34181128 -118356131 - B3 SINE B2 -68 148 1 3 845 670 145 174 0 chr5 34181156 34181294 -118355965 - B3 SINE B2 -2 214 53 3 845 556 279 94 63 chr5 34181317 34181508 -118355751 + B3A SINE B2 2 198 0 3 845 278 197 80 53 chr5 34181745 34181820 -118355439 - RSINE1 SINE B4 -43 122 46 3 845 243 300 0 62 chr5 34181901 34181965 -118355294 - ID4 SINE ID -9 74 15 3 845 365 268 0 35 chr5 34182291 34182376 -118354883 + ID4 SINE ID 2 83 0 3 845 302 281 48 12 chr5 34182395 34182478 -118354781 + B1_Mus2 SINE Alu 47 132 -15 3 845 428 274 18 64 chr5 34182542 34182651 -118354608 - B1_Mur4 SINE Alu -40 110 7 3 845 271 238 168 13 chr5 34182778 34182927 -118354332 - L1MEf LINE L1 -4609 1591 1420 3 845 203 189 0 0 chr5 34182938 34182975 -118354284 + T-rich Low_complexity Low_complexity 1 37 0 3 845 656 191 6 87 chr5 34182993 34183154 -118354105 + B1_Mur4 SINE Alu 2 149 -1 3 845 783 206 18 64 chr5 34183174 34183345 -118353914 - B3 SINE B2 -53 163 1 3 845 340 263 26 13 chr5 34183410 34183487 -118353772 - ID4_ SINE ID -3 80 3 3 845 507 290 18 83 chr5 34183522 34183691 -118353568 - B3A SINE B2 -5 193 36 3 845 1060 184 19 10 chr5 34183724 34183933 -118353326 - B3 SINE B2 -5 211 1 3 845 335 315 167 23 chr5 34184092 34184349 -118352910 - L1MEf LINE L1 -4947 1253 960 3 845 644 192 12 146 chr5 34184363 34184419 -118352840 - B1_Mur1 SINE Alu -1 148 96 3 845 308 239 336 27 chr5 34184419 34184565 -118352694 + B3A SINE B2 3 193 -5 3 845 644 192 12 146 chr5 34184565 34184679 -118352580 - B1_Mur1 SINE Alu -54 95 1 3 845 498 268 107 24 chr5 34184708 34184876 -118352383 + B3A SINE B2 1 182 -16 3 845 236 254 60 0 chr5 34185002 34185069 -118352190 - ID4 SINE ID -11 72 2 3 845 807 236 28 37 chr5 34185232 34185448 -118351811 - B3 SINE B2 -1 215 2 3 845 214 186 0 0 chr5 34185707 34185750 -118351509 + T-rich Low_complexity Low_complexity 1 43 0 3 845 448 208 50 3 chr5 34186657 34186763 -118350496 + PB1D9 SINE Alu 12 120 0 3 845 480 235 37 64 chr5 34187608 34187717 -118349542 - PB1D9 SINE Alu -11 109 4 3 845 257 216 0 0 chr5 34187897 34187948 -118349311 + BGLII LTR ERVK 312 362 -59 3 845 186 269 14 56 chr5 34188196 34188267 -118348992 - MIRc SINE MIR -115 153 86 3 845 1080 196 44 10 chr5 34189142 34189348 -118347911 - B3 SINE B2 0 216 4 4 845 1221 108 0 0 chr5 34189663 34189914 -118347345 + (TG)n Simple_repeat Simple_repeat 1 251 0 4 845 377 202 110 37 chr5 34189926 34190008 -118347251 - PB1D10 SINE Alu -29 88 1 4 845 472 291 112 14 chr5 34190829 34190972 -118346287 + RSINE1 SINE B4 3 159 -6 4 845 247 220 171 13 chr5 34191337 34191423 -118345836 - B1F2 SINE Alu -51 98 1 4 845 435 19 0 0 chr5 34191456 34191508 -118345751 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 845 610 287 111 0 chr5 34191518 34191699 -118345560 - B3 SINE B2 -15 201 1 4 845 26 0 0 0 chr5 34191700 34191726 -118345533 + AT_rich Low_complexity Low_complexity 1 26 0 4 845 576 109 37 65 chr5 34191810 34191918 -118345341 + B1_Mur2 SINE Alu 45 149 0 4 845 614 199 134 6 chr5 34191964 34192121 -118345138 - B2_Mm2 SINE B2 -14 181 5 4 845 363 306 9 26 chr5 34192174 34192288 -118344971 + PB1D10 SINE Alu 1 112 -5 4 845 576 165 26 52 chr5 34192289 34192404 -118344855 + B1_Mur1 SINE Alu 33 144 -5 4 845 614 187 38 142 chr5 34192407 34192619 -118344640 + B2_Mm2 SINE B2 1 190 -5 4 845 571 250 13 105 chr5 34192701 34192853 -118344406 - B1_Mur1 SINE Alu 0 149 12 4 845 241 299 54 88 chr5 34192728 34192875 -118344384 - MT2B2 LTR ERVL -288 296 155 4 845 663 250 77 12 chr5 34192906 34193076 -118344183 - B3A SINE B2 -15 183 3 4 845 696 208 33 0 chr5 34193122 34193242 -118344017 + B1_Mus1 SINE Alu 24 147 -1 4 845 24 32 0 0 chr5 34193246 34193277 -118343982 + AT_rich Low_complexity Low_complexity 1 31 0 4 845 1149 125 11 32 chr5 34193285 34193475 -118343784 + B2_Mm2 SINE B2 2 187 -8 4 845 1598 32 0 11 chr5 34193587 34193775 -118343484 + B2_Mm1a SINE B2 2 187 -6 4 845 907 209 69 10 chr5 34194064 34194267 -118342992 - B3 SINE B2 0 216 2 4 845 323 269 30 0 chr5 34194554 34194621 -118342638 + ID4 SINE ID 12 80 -3 4 845 234 128 0 0 chr5 34194635 34194674 -118342585 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 4 845 614 217 8 17 chr5 34194699 34194816 -118342443 + PB1D9 SINE Alu 5 120 0 4 845 533 187 27 27 chr5 34195072 34195182 -118342077 - B1_Mur1 SINE Alu 0 149 40 4 845 271 308 25 123 chr5 34195081 34195203 -118342056 - B4 SINE B4 -73 219 110 4 845 468 262 139 6 chr5 34195353 34195526 -118341733 - B3A SINE B2 0 198 3 4 845 554 262 86 71 chr5 34195548 34195758 -118341501 - B3 SINE B2 -1 215 3 4 845 450 0 0 0 chr5 34195764 34195814 -118341445 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 4 845 804 185 52 32 chr5 34195839 34196020 -118341239 - B3 SINE B2 0 216 38 4 845 767 199 20 14 chr5 34196056 34196204 -118341055 + B1_Mur3 SINE Alu 1 149 0 4 845 279 156 0 0 chr5 34196831 34196876 -118340383 - B3 SINE B2 -67 149 105 4 845 619 207 26 0 chr5 34197504 34197620 -118339639 - PB1D9 SINE Alu 0 120 2 4 845 25 0 0 0 chr5 34197873 34197898 -118339361 + AT_rich Low_complexity Low_complexity 1 25 0 4 845 25 0 0 0 chr5 34198809 34198834 -118338425 + AT_rich Low_complexity Low_complexity 1 25 0 4 845 932 204 102 0 chr5 34199000 34199196 -118338063 + B3 SINE B2 1 216 0 4 845 671 237 7 48 chr5 34199220 34199367 -118337892 + B1_Mur4 SINE Alu 1 140 -9 4 845 604 248 22 44 chr5 34199478 34199570 -118337689 + RSINE1 SINE B4 3 97 -68 4 845 3563 100 8 2 chr5 34199570 34200073 -118337186 - RLTR19C LTR ERVK 0 506 1 4 845 604 248 22 44 chr5 34200073 34200115 -118337144 + RSINE1 SINE B4 98 134 -31 4 845 34 0 0 0 chr5 34200131 34200165 -118337094 + AT_rich Low_complexity Low_complexity 1 34 0 4 845 400 268 35 35 chr5 34200392 34200508 -118336751 + PB1D10 SINE Alu 2 117 0 4 845 261 0 0 0 chr5 34200508 34200537 -118336722 + (A)n Simple_repeat Simple_repeat 1 29 0 4 845 510 351 33 7 chr5 34200604 34200756 -118336503 + B3A SINE B2 1 156 -42 4 845 469 224 0 65 chr5 34200767 34200891 -118336368 - PB1D9 SINE Alu 0 120 5 4 845 328 260 190 0 chr5 34200925 34201025 -118336234 + PB1D9 SINE Alu 1 119 -1 4 845 1235 48 0 0 chr5 34201030 34201177 -118336082 + B1_Mm SINE Alu 1 147 0 4 845 1087 67 7 0 chr5 34201530 34201665 -118335594 + B1_Mur4 SINE Alu 2 137 -13 4 845 378 0 0 0 chr5 34201665 34201707 -118335552 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 4 845 363 118 0 0 chr5 34201714 34201765 -118335494 + B3 SINE B2 1 51 -165 4 845 225 0 0 0 chr5 34202534 34202559 -118334700 + (T)n Simple_repeat Simple_repeat 1 25 0 4 845 567 0 0 0 chr5 34203315 34203378 -118333881 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 4 845 1113 51 0 7 chr5 34203379 34203517 -118333742 - B1_Mus1 SINE Alu -11 137 1 4 845 1617 206 59 34 chr5 34204545 34204901 -118332358 - ORR1D1 LTR MaLR -2 372 8 4 845 335 284 102 15 chr5 34205813 34205922 -118331337 + B1F1 SINE Alu 1 112 -5 4 845 225 0 0 0 chr5 34205977 34206002 -118331257 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 845 604 234 14 20 chr5 34206279 34206427 -118330832 + B1_Mus1 SINE Alu 1 147 -1 4 845 36 19 0 19 chr5 34206509 34206536 -118330723 + AT_rich Low_complexity Low_complexity 1 27 0 4 845 1258 20 7 0 chr5 34206536 34206683 -118330576 + B1_Mus1 SINE Alu 1 148 0 4 845 36 19 0 19 chr5 34206683 34206709 -118330550 + AT_rich Low_complexity Low_complexity 1 26 0 4 845 753 211 143 11 chr5 34206716 34206898 -118330361 - B3 SINE B2 -10 206 1 4 845 302 203 133 13 chr5 34206979 34207054 -118330205 - PB1D10 SINE Alu -11 106 23 4 845 1457 51 17 0 chr5 34207664 34207842 -118329417 - B2_Mm2 SINE B2 -14 181 1 4 845 21 36 0 0 chr5 34208564 34208592 -118328667 + AT_rich Low_complexity Low_complexity 1 28 0 4 845 508 174 78 39 chr5 34208874 34208976 -118328283 + PB1D9 SINE Alu 9 114 -6 4 845 462 319 0 14 chr5 34209279 34209419 -118327840 - ID_B1 SINE B4 0 224 87 4 845 180 77 0 0 chr5 34209466 34209492 -118327767 + (GCTG)n Simple_repeat Simple_repeat 2 27 0 4 845 766 193 15 15 chr5 34209585 34209722 -118327537 - B1_Mur2 SINE Alu -10 139 3 4 105 277 219 151 0 chr5 34209774 34209847 -118327412 - PB1D9 SINE Alu -1 119 36 4 846 231 36 0 0 chr5 34209848 34209876 -118327383 + (TCCA)n Simple_repeat Simple_repeat 1 28 0 4 846 29 47 0 0 chr5 34209937 34209980 -118327279 + AT_rich Low_complexity Low_complexity 1 43 0 4 846 316 262 25 0 chr5 34213013 34213093 -118324166 - ID4 SINE ID 0 83 2 4 846 184 259 86 0 chr5 34215043 34215101 -118322158 + MIRb SINE MIR 187 249 -19 4 846 24 0 0 0 chr5 34215424 34215448 -118321811 + AT_rich Low_complexity Low_complexity 1 24 0 4 846 21 0 0 0 chr5 34218991 34219012 -118318247 + AT_rich Low_complexity Low_complexity 1 21 0 4 846 378 0 0 0 chr5 34222036 34222078 -118315181 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 846 202 318 23 23 chr5 34222209 34222296 -118314963 + MIRc SINE MIR 44 130 -138 4 846 311 250 40 0 chr5 34224153 34224229 -118313030 - ID4 SINE ID 0 83 5 4 846 320 164 0 76 chr5 34225016 34225082 -118312177 + B1_Mur4 SINE Alu 1 61 -89 4 846 1035 128 0 20 chr5 34225888 34226039 -118311220 - B1_Mur4 SINE Alu -1 149 2 4 846 3234 38 125 23 chr5 34226047 34226478 -118310781 - IAPLTR2_Mm LTR ERVK 0 475 1 4 846 432 0 0 0 chr5 34227764 34227812 -118309447 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 846 505 94 12 12 chr5 34228363 34228449 -118308810 + (TG)n Simple_repeat Simple_repeat 1 86 0 4 846 560 186 34 34 chr5 34228452 34228569 -118308690 - RSINE1 SINE B4 -46 119 3 4 846 24 0 0 0 chr5 34228632 34228656 -118308603 + AT_rich Low_complexity Low_complexity 1 24 0 4 846 422 270 85 28 chr5 34228691 34228832 -118308427 + B1F2 SINE Alu 1 149 0 4 846 1002 224 19 23 chr5 34229083 34229298 -118307961 + B3 SINE B2 3 216 0 4 846 225 288 39 52 chr5 34230383 34230460 -118306799 + PB1D10 SINE Alu 1 76 -41 4 846 360 77 0 0 chr5 34230559 34230611 -118306648 + (TGG)n Simple_repeat Simple_repeat 2 53 0 4 846 322 0 0 0 chr5 34230611 34230649 -118306610 - HAL1-3A_ME LINE L1 -846 2012 1975 4 846 211 132 0 26 chr5 34230737 34230776 -118306483 + T-rich Low_complexity Low_complexity 3 40 0 4 846 576 242 145 16 chr5 34231116 34231364 -118305895 + L1M4c LINE L1 590 869 -5515 4 846 590 129 153 67 chr5 34231371 34231521 -118305738 - B2_Mm2 SINE B2 -8 187 25 4 846 275 269 25 92 chr5 34231663 34231674 -118305585 - MT2B2 LTR ERVL -313 271 166 4 846 423 262 39 0 chr5 34231674 34231777 -118305482 - B1F SINE Alu -40 109 3 4 846 247 135 77 0 chr5 34231992 34232044 -118305215 + (CCCA)n Simple_repeat Simple_repeat 2 57 0 4 846 477 0 0 0 chr5 34232044 34232097 -118305162 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 846 204 40 0 0 chr5 34232098 34232123 -118305136 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 4 846 527 262 12 110 chr5 34232138 34232301 -118304958 + B4 SINE B4 76 222 -70 4 846 608 237 25 32 chr5 34232319 34232476 -118304783 + RSINE1 SINE B4 10 165 0 4 846 455 262 37 136 chr5 34232582 34232759 -118304500 + B3A SINE B2 34 192 -3 4 846 385 321 7 41 chr5 34232937 34233083 -118304176 - RSINE1 SINE B4 -6 159 19 5 846 280 219 31 0 chr5 34233252 34233316 -118303943 - PB1 SINE Alu -51 76 11 5 846 1032 114 108 6 chr5 34235304 34235480 -118301779 - B2_Mm2 SINE B2 0 195 2 5 846 602 211 114 0 chr5 34236910 34237033 -118300226 + B1_Mus2 SINE Alu 1 137 -10 5 846 235 200 132 44 chr5 34237411 34237479 -118299780 + ID4_ SINE ID 9 82 -1 5 846 236 167 74 0 chr5 34243765 34243819 -118293440 + (CATA)n Simple_repeat Simple_repeat 1 58 0 5 846 265 211 221 13 chr5 34244064 34244141 -118293118 + PB1D7 SINE Alu 21 113 -7 5 846 964 170 122 0 chr5 34244675 34244863 -118292396 + B3 SINE B2 1 211 -5 5 846 21 36 0 0 chr5 34246338 34246366 -118290893 + AT_rich Low_complexity Low_complexity 1 28 0 5 846 4531 12 0 0 chr5 34246776 34247269 -118289990 - MT2_Mm LTR ERVL 0 493 1 5 846 321 0 0 0 chr5 34247269 34247307 -118289952 - MERVL-int LTR ERVL 0 5485 5448 5 846 362 167 46 35 chr5 34247307 34247394 -118289865 - ORR1A3-int LTR MaLR -1323 640 553 5 846 21476 23 0 0 chr5 34247394 34249784 -118287475 - MERVL-int LTR ERVL -125 5360 2970 5 846 4472 8 2 12 chr5 34249784 34250282 -118286977 + MT2_Mm LTR ERVL 1 493 0 5 846 2273 20 0 0 chr5 34250282 34250536 -118286723 + MERVL-int LTR ERVL 1 254 -5231 5 846 2951 26 3 0 chr5 34250527 34250867 -118286392 + MERVL-int LTR ERVL 5020 5360 -125 5 846 344 179 46 35 chr5 34250867 34250954 -118286305 + ORR1A3-int LTR MaLR 553 640 -1323 5 846 321 0 0 0 chr5 34250954 34250992 -118286267 + MERVL-int LTR ERVL 5448 5485 0 5 846 4472 8 2 12 chr5 34250992 34251490 -118285769 + MT2_Mm LTR ERVL 1 493 0 5 846 26778 12 11 0 chr5 34251490 34254431 -118282828 - MERVL-int LTR ERVL -2511 2974 1 5 846 4531 12 0 0 chr5 34254431 34254924 -118282335 - MT2_Mm LTR ERVL 0 493 1 5 846 391 211 21 0 chr5 34255774 34255869 -118281390 + PB1D10 SINE Alu 21 117 0 5 846 23 0 0 0 chr5 34255954 34255977 -118281282 + AT_rich Low_complexity Low_complexity 1 23 0 5 846 2928 35 9 0 chr5 34256002 34256345 -118280914 + ORR1A0 LTR MaLR 1 346 0 5 846 14149 48 19 3 chr5 34256345 34258108 -118279151 + ORR1A0-int LTR MaLR 1 1792 0 5 846 2630 31 55 58 chr5 34258108 34258455 -118278804 + ORR1A0 LTR MaLR 1 346 0 5 846 1180 165 68 62 chr5 34258914 34259250 -118278009 + RLTR15 LTR ERVK 1 338 -21 5 846 1170 68 0 0 chr5 34259539 34259687 -118277572 - B1_Mus1 SINE Alu 0 148 1 5 846 27 0 0 0 chr5 34259687 34259714 -118277545 + AT_rich Low_complexity Low_complexity 1 27 0 5 846 823 36 0 26 chr5 34259985 34260100 -118277159 + B1_Mm SINE Alu 36 147 0 5 846 582 283 58 0 chr5 34260224 34260397 -118276862 + MYSERV6-int LTR ERVK 4118 4300 -4659 5 846 572 264 35 12 chr5 34260387 34260556 -118276703 + MYSERV-int LTR ERVK 3917 4089 -2461 5 846 1426 277 134 69 chr5 34260587 34261458 -118275801 + MYSERV-int LTR ERVK 4199 5126 -1424 5 846 530 273 39 28 chr5 34261462 34261643 -118275616 + RMER4A LTR ERVK 255 437 -29 5 846 3553 160 99 40 chr5 34261661 34262713 -118274546 + MYSERV6-int LTR ERVK 7818 8728 -231 5 846 1394 175 26 24 chr5 34262758 34263098 -118274161 + RLTR15 LTR ERVK 3 343 -16 5 846 793 246 58 50 chr5 34265695 34265956 -118271303 + ORR1D1 LTR MaLR 106 368 -6 5 846 10444 73 15 44 chr5 34266026 34267907 -118269352 + L1VL2 LINE L1 28 1851 -1764 5 846 1330 111 0 21 chr5 34267907 34268101 -118269158 + B2_Mm2 SINE B2 2 191 -4 5 846 10444 57 18 28 chr5 34268101 34268645 -118268614 + L1VL2 LINE L1 1852 2378 -1237 5 846 307 167 0 3 chr5 34269084 34269145 -118268114 + MTA_Mm LTR MaLR 52 111 -310 5 846 812 98 0 0 chr5 34269719 34269841 -118267418 + B1_Mm SINE Alu 26 147 0 5 846 195 125 0 0 chr5 34269853 34269893 -118267366 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 5 846 967 326 34 5 chr5 34269899 34270267 -118266992 + MYSERV6-int LTR ERVK 1742 2096 -6863 5 846 902 73 0 0 chr5 34270275 34270399 -118266860 + B1_Mus1 SINE Alu 1 124 -24 5 846 4473 198 54 26 chr5 34270399 34271431 -118265828 + MYSERV6-int LTR ERVK 2099 3159 -5800 5 846 1733 149 56 0 chr5 34271446 34271768 -118265491 + ORR1B1 LTR MaLR 47 386 -8 5 846 1156 158 54 9 chr5 34271769 34271993 -118265266 + MYSERV6-int LTR ERVK 3152 3385 -5574 5 846 788 210 186 14 chr5 34271988 34272263 -118264996 + MYSERV6-int LTR ERVK 4245 4566 -4393 5 846 1942 114 100 0 chr5 34272456 34272746 -118264513 - ORR1A3 LTR MaLR -4 322 4 5 846 436 300 91 133 chr5 34272768 34273272 -118263987 + MYSERV6-int LTR ERVK 4653 5135 -1415 5 846 1198 22 0 0 chr5 34273334 34273472 -118263787 + B1_Mm SINE Alu 1 138 -9 5 846 282 29 0 0 chr5 34273472 34273507 -118263752 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 846 1952 232 62 71 chr5 34273527 34274309 -118262950 + MYSERV6-int LTR ERVK 7952 8643 -316 5 846 401 171 24 12 chr5 34274505 34274615 -118262644 + MYSERV6-int LTR ERVK 8704 8779 -180 5 846 1297 87 37 26 chr5 34274642 34274831 -118262428 + B2_Mm2 SINE B2 1 191 -4 5 846 442 226 25 25 chr5 34274900 34275018 -118262241 + MYSERV-int LTR ERVK 6433 6550 0 5 846 297 0 0 0 chr5 34275883 34275916 -118261343 + (A)n Simple_repeat Simple_repeat 1 33 0 5 846 1001 142 262 10 chr5 34276005 34276410 -118260849 + RLTR12B LTR ERVK 2 509 -19 5 846 652 258 81 12 chr5 34276457 34276716 -118260543 + B4A SINE B4 2 278 -14 5 846 222 37 0 0 chr5 34276913 34276940 -118260319 + (A)n Simple_repeat Simple_repeat 1 27 0 5 846 207 0 0 0 chr5 34277034 34277057 -118260202 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 5 846 210 37 0 0 chr5 34277459 34277486 -118259773 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 846 21 36 0 0 chr5 34277918 34277946 -118259313 + AT_rich Low_complexity Low_complexity 1 28 0 5 846 259 239 41 27 chr5 34278003 34278076 -118259183 + B1F1 SINE Alu 24 97 -52 5 846 1137 22 58 0 chr5 34278175 34278314 -118258945 + B1_Mm SINE Alu 1 147 0 5 846 596 176 0 9 chr5 34279510 34279619 -118257640 - B1_Mus1 SINE Alu -28 120 13 5 846 212 325 48 0 chr5 34279644 34279727 -118257532 + FAM SINE Alu 144 230 -81 5 846 241 286 153 12 chr5 34279764 34279849 -118257410 + PB1D7 SINE Alu 3 99 -21 5 846 1085 102 0 0 chr5 34280128 34280275 -118256984 + B1_Mus1 SINE Alu 2 148 0 5 846 2087 128 127 24 chr5 34280288 34280704 -118256555 - RMER4A LTR ERVK 0 466 8 5 846 645 185 83 15 chr5 34280727 34280859 -118256400 + B1_Mur3 SINE Alu 2 142 -7 5 846 3322 160 127 82 chr5 34280859 34281708 -118255551 + RMER19B LTR ERVK 1 887 -15 5 846 2445 162 174 23 chr5 34281722 34282317 -118254942 + MurERV4_19-int LTR ERVK 1 700 -5080 5 846 1070 52 0 29 chr5 34282317 34282455 -118254804 + B1_Mus2 SINE Alu 2 135 -12 5 846 216 0 0 0 chr5 34282456 34282480 -118254779 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 846 2445 138 23 62 chr5 34282480 34282708 -118254551 + MurERV4_19-int LTR ERVK 701 906 -4874 5 846 22169 165 34 64 chr5 34282708 34284560 -118252699 + L1VL2 LINE L1 566 2448 -3438 5 846 1934 207 82 45 chr5 34284560 34285097 -118252162 - RLTR31B_Mm LTR ERVK 0 557 1 5 846 22169 148 18 59 chr5 34285097 34286745 -118250514 + L1VL2 LINE L1 2449 4081 -1805 5 846 1134 75 6 0 chr5 34286745 34286904 -118250355 + B2_Mm1t SINE B2 1 160 -33 5 846 423 0 0 0 chr5 34286904 34286951 -118250308 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 5 846 22169 148 18 59 chr5 34286951 34288231 -118249028 + L1VL2 LINE L1 4082 5317 -569 5 846 2010 142 0 16 chr5 34288250 34288570 -118248689 - Lx6 LINE L1 -1831 5629 5310 5 846 1228 73 6 6 chr5 34288570 34288748 -118248511 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 5 846 743 176 23 0 chr5 34288773 34288848 -118248411 + C-rich Low_complexity Low_complexity 104 180 0 5 846 1100 124 0 6 chr5 34288848 34289027 -118248232 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 5 846 743 176 23 0 chr5 34289027 34289127 -118248132 + C-rich Low_complexity Low_complexity 2 103 0 5 846 798 87 8 0 chr5 34289145 34289271 -118247988 + ORR1A4 LTR MaLR 1 127 -202 5 846 185 94 0 30 chr5 34289292 34289325 -118247934 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 5 846 1160 61 7 0 chr5 34289325 34289472 -118247787 - B1_Mus1 SINE Alu 0 148 1 5 846 1007 83 21 0 chr5 34289472 34289617 -118247642 + BGLII_B LTR ERVK 21 168 -273 5 846 2005 109 25 19 chr5 34289618 34289936 -118247323 - RLTR46 LTR ERVK 0 320 1 5 846 1937 104 2 1 chr5 34289936 34290213 -118247046 - MMERVK10C-int LTR ERVK 0 7581 7232 5 846 1646 47 0 0 chr5 34290213 34290405 -118246854 - B2_Mm1a SINE B2 0 193 2 5 846 1613 163 27 13 chr5 34290405 34290425 -118246834 - MMERVK10C-int LTR ERVK -282 7231 7212 5 846 20286 113 26 40 chr5 34290423 34293673 -118243586 - MMERVK10C-int LTR ERVK -253 7328 4125 5 846 8163 92 21 0 chr5 34293672 34294756 -118242503 - MMERVK10C-int LTR ERVK -3662 3919 2813 5 846 4069 73 54 9 chr5 34294778 34295315 -118241944 - MMERVK10C-int LTR ERVK -5136 2445 1885 5 846 408 161 123 0 chr5 34295306 34295387 -118241872 - MMERVK10C-int LTR ERVK -5109 1028 938 5 846 1711 173 181 32 chr5 34295392 34295833 -118241426 - MMERVK10C-int LTR ERVK -4587 819 313 5 846 595 179 72 16 chr5 34295814 34295939 -118241320 - MMERVK10C-int LTR ERVK -6913 668 537 5 846 2236 251 72 101 chr5 34295934 34296822 -118240437 - IAPEY3-int LTR ERVK -6760 920 54 5 846 201 39 0 0 chr5 34296822 34296848 -118240411 + (G)n Simple_repeat Simple_repeat 1 26 0 5 846 2236 251 72 101 chr5 34296848 34296904 -118240355 - IAPEY3-int LTR ERVK -7627 53 3 5 846 2064 112 19 0 chr5 34296906 34297220 -118240039 - RLTR46 LTR ERVK 0 320 1 5 846 1157 145 116 8 chr5 34297220 34297471 -118239788 + BGLII_B LTR ERVK 164 441 0 5 846 1322 119 5 0 chr5 34297473 34297675 -118239584 + ORR1A4 LTR MaLR 127 329 0 5 846 243 176 58 14 chr5 34297675 34297744 -118239515 - RLTR12B LTR ERVK -326 202 131 5 846 310 295 28 19 chr5 34297840 34297947 -118239312 + RSINE1 SINE B4 41 148 -17 5 846 732 129 44 22 chr5 34297988 34298123 -118239136 - B1_Mur3 SINE Alu 0 149 12 5 846 412 220 70 0 chr5 34298476 34298576 -118238683 + PB1D9 SINE Alu 13 119 -1 5 846 584 207 229 6 chr5 34298766 34298941 -118238318 + B3 SINE B2 1 214 -2 5 846 2230 111 22 20 chr5 34299112 34299470 -118237789 + RLTR15 LTR ERVK 1 359 0 5 846 1426 133 131 186 chr5 34299492 34299889 -118237370 - ORR1C1 LTR MaLR -3 375 1 5 846 1520 173 25 25 chr5 34300144 34300459 -118236800 - RMER15 LTR ERVL 0 575 261 5 846 5027 145 87 10 chr5 34300606 34301443 -118235816 - RMER19B LTR ERVK 0 902 1 5 846 252 213 16 16 chr5 34301668 34301730 -118235529 + CT-rich Low_complexity Low_complexity 1 62 0 5 846 281 253 108 0 chr5 34301856 34301939 -118235320 + RMER10A LTR ERVL 318 409 -33 5 846 255 264 18 62 chr5 34302463 34302576 -118234683 - RLTR14 LTR ERV1 -8 374 267 5 846 920 234 273 39 chr5 34303072 34303530 -118233729 - RMER21B LTR ERV1 -275 567 3 5 846 326 253 188 20 chr5 34304031 34304180 -118233079 - RMER21B LTR ERV1 -275 567 394 5 846 627 232 130 44 chr5 34304186 34304501 -118232758 + RLTR15 LTR ERVK 1 342 -17 5 846 2516 228 41 30 chr5 34305253 34306084 -118231175 + Lx2B LINE L1 6021 7049 -1 5 846 283 280 10 10 chr5 34306084 34306185 -118231074 + Lx2B LINE L1 6895 6995 -5 5 846 7493 254 76 65 chr5 34306208 34307347 -118229912 + MYSERV6-int LTR ERVK 368 1530 -7429 5 846 255 31 0 0 chr5 34307347 34307379 -118229880 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 5 846 7493 254 76 65 chr5 34307379 34307512 -118229747 + MYSERV6-int LTR ERVK 1531 1668 -7291 5 846 180 0 0 0 chr5 34307512 34307532 -118229727 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 5 846 7493 254 76 65 chr5 34307532 34307728 -118229531 + MYSERV6-int LTR ERVK 1669 1848 -7111 5 846 3938 58 56 0 chr5 34307728 34307790 -118229469 - RLTR1B LTR ERV1 0 512 438 6 846 450 0 0 0 chr5 34307790 34307840 -118229419 + (CAGAA)n Simple_repeat Simple_repeat 3 52 0 6 846 3938 58 56 0 chr5 34307840 34308262 -118228997 - RLTR1B LTR ERV1 -75 437 2 6 846 7493 254 76 65 chr5 34308262 34309949 -118227310 + MYSERV6-int LTR ERVK 1849 3553 -5406 5 846 1129 83 0 0 chr5 34309949 34310094 -118227165 + B1_Mus2 SINE Alu 1 145 -2 6 846 7493 254 76 65 chr5 34310094 34310415 -118226844 + MYSERV6-int LTR ERVK 3554 3886 -5073 5 846 2834 258 96 51 chr5 34310412 34311545 -118225714 + MYSERV6-int LTR ERVK 3827 5010 -1540 5 846 255 104 104 0 chr5 34311560 34311608 -118225651 + RLTR15 LTR ERVK 1 53 -306 6 846 216 111 31 16 chr5 34311609 34311673 -118225586 + (TTAAA)n Simple_repeat Simple_repeat 5 69 0 6 846 1566 139 13 77 chr5 34311693 34311856 -118225403 + RLTR15 LTR ERVK 69 235 -124 6 846 2861 0 0 0 chr5 34311856 34312168 -118225091 + L1Md_T LINE L1 6271 6582 0 6 846 1566 139 13 77 chr5 34312168 34312315 -118224944 + RLTR15 LTR ERVK 236 359 0 6 846 2368 290 121 42 chr5 34313105 34314368 -118222891 + MYSERV-int LTR ERVK 3774 5136 -1414 6 846 241 371 52 13 chr5 34314374 34314527 -118222732 + RMER4A LTR ERVK 266 424 -42 6 846 1389 213 80 24 chr5 34314614 34315040 -118222219 + MYSERV-int LTR ERVK 5373 5781 -769 6 846 1269 93 5 30 chr5 34315057 34315256 -118222003 - B2_Mm2 SINE B2 0 195 2 6 846 4330 145 39 71 chr5 34315256 34316169 -118221090 - RMER19B LTR ERVK -16 886 3 6 846 535 115 11 11 chr5 34316170 34316258 -118221001 + MYSERV6-int LTR ERVK 8198 8285 -674 6 846 1331 263 98 16 chr5 34316259 34316383 -118220876 - RMER19A LTR ERVK 0 737 599 6 846 1142 82 0 0 chr5 34316383 34316529 -118220730 - B1_Mus1 SINE Alu -2 146 1 6 846 1331 263 98 16 chr5 34316529 34316844 -118220415 - RMER19A LTR ERVK -139 598 262 6 846 2029 220 43 10 chr5 34316846 34317352 -118219907 + MYSERV-int LTR ERVK 5843 6365 -185 6 846 299 228 128 0 chr5 34317335 34317484 -118219775 + MYSERV16_I-int LTR ERVK 2158 2325 -1 6 846 2006 153 38 3 chr5 34317485 34317832 -118219427 + RLTR15 LTR ERVK 1 359 0 6 846 254 299 20 30 chr5 34317838 34317938 -118219321 + MYSERV-int LTR ERVK 5267 5365 -415 6 846 469 253 29 51 chr5 34317938 34318113 -118219146 + RMER4A LTR ERVK 253 423 -43 6 846 1621 201 105 12 chr5 34318118 34318526 -118218733 + MYSERV-int LTR ERVK 5312 5757 -793 6 846 872 169 0 7 chr5 34318558 34318707 -118218552 - MYSERV6-int LTR ERVK -632 8327 8180 6 846 342 0 0 0 chr5 34319090 34319128 -118218131 + (A)n Simple_repeat Simple_repeat 1 38 0 6 846 536 203 17 8 chr5 34319898 34320009 -118217250 - RMER19B LTR ERVK -4 898 787 6 846 471 206 52 0 chr5 34320009 34320106 -118217153 + RMER19B LTR ERVK 1 102 -800 6 846 286 145 48 0 chr5 34320130 34320192 -118217067 + RMER10B LTR ERVL 118 182 -216 6 846 379 243 108 27 chr5 34320220 34320368 -118216891 + RLTR12B LTR ERVK 48 207 -321 6 846 264 289 32 40 chr5 34320508 34320634 -118216625 - RLTR12B LTR ERVK -225 303 179 6 846 535 265 46 13 chr5 34320664 34320817 -118216442 + RMER10B LTR ERVL 160 317 -81 6 846 324 241 24 24 chr5 34321048 34321133 -118216126 + MLT1A1 LTR MaLR 312 396 -12 6 846 321 292 150 36 chr5 34321402 34321569 -118215690 + RLTR18B LTR ERVK 11 196 -316 6 846 400 303 97 60 chr5 34321563 34321830 -118215429 + RLTR18 LTR ERVK 111 387 -125 6 846 293 62 83 0 chr5 34321850 34321898 -118215361 + ORR1C2 LTR MaLR 332 383 -1 6 846 405 186 75 38 chr5 34321898 34322000 -118215259 + RLTR18 LTR ERVK 510 615 -1 6 846 1200 168 139 89 chr5 34322131 34322379 -118214880 + ORR1C2 LTR MaLR 7 251 -133 6 846 252 0 0 0 chr5 34322379 34322407 -118214852 + (CCTG)n Simple_repeat Simple_repeat 3 30 0 6 846 1200 168 139 89 chr5 34322407 34322436 -118214823 + ORR1C2 LTR MaLR 252 280 -104 6 846 4854 121 19 68 chr5 34322436 34323280 -118213979 + RLTR13B4 LTR ERVK 1 803 0 6 846 1200 168 139 89 chr5 34323280 34323361 -118213898 + ORR1C2 LTR MaLR 281 383 -1 6 846 249 279 0 95 chr5 34323364 34323459 -118213800 + L1M2 LINE L1 5780 5865 -435 6 846 865 168 7 7 chr5 34323603 34323747 -118213512 + B1_Mus1 SINE Alu 4 147 -1 6 846 385 232 194 39 chr5 34323792 34323998 -118213261 - L1MB3 LINE L1 -50 6133 5896 6 846 377 318 19 56 chr5 34324039 34324156 -118213103 - RSINE1 SINE B4 -9 156 40 6 846 1999 147 86 9 chr5 34324156 34324506 -118212753 - ORR1C1 LTR MaLR 0 378 2 6 846 377 318 19 56 chr5 34324506 34324548 -118212711 - RSINE1 SINE B4 -126 39 3 6 846 216 67 0 0 chr5 34324792 34324822 -118212437 + (AGGGGG)n Simple_repeat Simple_repeat 2 31 0 6 846 252 59 0 0 chr5 34325680 34325714 -118211545 + (CCCCCA)n Simple_repeat Simple_repeat 1 34 0 6 846 507 196 115 34 chr5 34328957 34329105 -118208154 - RSINE1 SINE B4 -5 160 1 6 846 394 206 227 0 chr5 34329294 34329391 -118207868 + B1_Mm SINE Alu 1 119 -28 6 846 607 25 25 0 chr5 34329391 34329472 -118207787 + (GA)n Simple_repeat Simple_repeat 2 84 0 6 846 1004 110 7 0 chr5 34330593 34330738 -118206521 - B1_Mus2 SINE Alu -1 146 1 6 846 24 0 0 0 chr5 34330744 34330768 -118206491 + AT_rich Low_complexity Low_complexity 1 24 0 6 846 7684 75 24 2 chr5 34330785 34331786 -118205473 - RLTR13D5 LTR ERVK 0 1023 1 6 846 1525 117 93 0 chr5 34331794 34332041 -118205218 - ETnERV3-int LTR ERVK -10 5798 5529 6 846 6271 116 109 67 chr5 34332055 34333213 -118204046 - RLTR45-int LTR ERVK -1173 6071 4865 6 846 10019 111 20 33 chr5 34333226 34334175 -118203084 - ETnERV2-int LTR ERVK -4008 3398 2443 6 846 3330 46 5 0 chr5 34334175 34334569 -118202690 - MTA_Mm LTR MaLR 0 396 1 6 846 8826 49 9 6 chr5 34334569 34335664 -118201595 - MTA_Mm-int LTR MaLR 0 1098 1 6 846 3522 38 0 0 chr5 34335664 34336060 -118201199 - MTA_Mm LTR MaLR 0 396 1 6 846 10019 111 20 33 chr5 34336060 34336728 -118200531 - ETnERV2-int LTR ERVK -4964 2442 1803 6 846 347 119 15 0 chr5 34336733 34336800 -118200459 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 846 26 50 0 0 chr5 34339332 34339372 -118197887 + GC_rich Low_complexity Low_complexity 1 40 0 6 846 192 77 0 0 chr5 34339375 34339401 -118197858 + (CCG)n Simple_repeat Simple_repeat 3 28 0 6 846 38 93 0 0 chr5 34339607 34339715 -118197544 + GC_rich Low_complexity Low_complexity 1 108 0 6 846 30 0 0 0 chr5 34339865 34339895 -118197364 + GC_rich Low_complexity Low_complexity 1 30 0 6 846 202 179 259 35 chr5 34340424 34340482 -118196777 - MIRm SINE MIR -125 151 81 6 847 211 226 57 73 chr5 34344371 34344495 -118192764 + (GCCTG)n Simple_repeat Simple_repeat 4 125 0 6 847 244 311 0 0 chr5 34347738 34347812 -118189447 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 847 342 0 0 0 chr5 34347883 34347921 -118189338 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 847 255 340 11 0 chr5 34347975 34348069 -118189190 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 847 207 0 0 0 chr5 34348161 34348184 -118189075 + (CCCTG)n Simple_repeat Simple_repeat 3 25 0 6 847 657 157 52 0 chr5 34352647 34352762 -118184497 - B1_Mus1 SINE Alu -24 124 4 6 847 1133 209 45 0 chr5 34357400 34357601 -118179658 + B3 SINE B2 7 216 0 6 847 1281 220 91 71 chr5 34357635 34358144 -118179115 - MT2B LTR ERVL -7 594 1 6 847 25258 143 37 28 chr5 34358144 34358290 -118178969 - MERVL_2A-int LTR ERVL 0 5761 5612 6 847 267 246 57 14 chr5 34358290 34358360 -118178899 - ORR1A3-int LTR MaLR -1346 617 545 6 847 25258 143 37 28 chr5 34358360 34361296 -118175963 - MERVL_2A-int LTR ERVL 0 5611 2588 6 847 4690 160 66 54 chr5 34361296 34362187 -118175072 + RMER19B LTR ERVK 1 902 0 6 847 25258 143 37 28 chr5 34362187 34363224 -118174035 - MERVL_2A-int LTR ERVL -3174 2587 1534 6 847 993 205 48 143 chr5 34363339 34363747 -118173512 - MT2B2 LTR ERVL -61 523 1 6 847 365 336 0 0 chr5 34363757 34363861 -118173398 - Arthur1 DNA Tip100 -3293 654 551 6 847 225 286 94 16 chr5 34363897 34363961 -118173298 - ID4_ SINE ID -9 74 6 6 847 533 340 88 46 chr5 34364671 34364976 -118172283 - Arthur1 DNA Tip100 -3564 383 66 6 847 1100 202 9 9 chr5 34365574 34365789 -118171470 + B3 SINE B2 2 216 0 6 847 29 28 0 0 chr5 34366025 34366061 -118171198 + AT_rich Low_complexity Low_complexity 1 36 0 6 847 198 0 0 0 chr5 34366111 34366133 -118171126 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6 847 732 166 29 22 chr5 34366133 34366269 -118170990 - B1_Mur4 SINE Alu -12 138 2 6 847 321 257 0 122 chr5 34366170 34366285 -118170974 - MT2B LTR ERVL -346 255 155 6 847 1085 79 0 26 chr5 34366288 34366443 -118170816 + RMER4B LTR ERVK 1 151 -434 6 847 1360 116 133 4 chr5 34366444 34366669 -118170590 + RMER4B LTR ERVK 332 585 0 6 847 229 272 63 102 chr5 34367619 34367728 -118169531 + MIR SINE MIR 46 151 -111 6 847 6653 57 4 1 chr5 34367728 34368544 -118168715 - L1Md_F2 LINE L1 -2 6580 5763 6 847 229 272 63 102 chr5 34368544 34368561 -118168698 + MIR SINE MIR 152 167 -95 6 847 342 100 0 0 chr5 34369057 34369117 -118168142 + (T)n Simple_repeat Simple_repeat 1 60 0 6 847 362 277 154 13 chr5 34369395 34369620 -118167639 - L1MEb LINE L1 -5199 977 708 6 847 349 259 74 34 chr5 34369699 34369847 -118167412 + MTE-int LTR MaLR 3 156 -1424 6 847 27 29 0 0 chr5 34369847 34369881 -118167378 + AT_rich Low_complexity Low_complexity 1 34 0 6 847 526 273 22 159 chr5 34369923 34370138 -118167121 + MTE-int LTR MaLR 125 312 -1268 6 847 1567 275 190 43 chr5 34370168 34370838 -118166421 + MTE-int LTR MaLR 747 1514 -66 6 847 620 214 12 36 chr5 34370836 34371002 -118166257 + B3 SINE B2 28 183 -12 6 847 1192 235 92 92 chr5 34371067 34371438 -118165821 + MTE2a LTR MaLR 9 421 0 6 847 2044 194 24 36 chr5 34371878 34372294 -118164965 - MTD LTR MaLR -8 411 1 6 847 766 218 93 5 chr5 34374484 34374678 -118162581 + B3 SINE B2 1 211 -5 6 847 1192 159 22 35 chr5 34374968 34375196 -118162063 + URR1B DNA MER1_type 1 225 0 6 847 1118 227 99 21 chr5 34376259 34376542 -118160717 + Lx2B LINE L1 6694 6998 -2 6 847 198 0 0 0 chr5 34376572 34376594 -118160665 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6 847 14719 69 67 6 chr5 34376633 34378128 -118159131 + L1VL2 LINE L1 230 1824 -1791 6 847 3482 30 2 0 chr5 34378128 34378523 -118158736 - MTA_Mm LTR MaLR 0 396 1 6 847 9619 23 2 1 chr5 34378523 34379620 -118157639 - MTA_Mm-int LTR MaLR 0 1098 1 6 847 3584 18 2 0 chr5 34379620 34380015 -118157244 - MTA_Mm LTR MaLR 0 396 1 6 847 14719 68 19 10 chr5 34380015 34380761 -118156498 + L1VL2 LINE L1 1825 2563 -1052 6 847 884 102 0 14 chr5 34380761 34380900 -118156359 + (GAAA)n Simple_repeat Simple_repeat 3 139 0 6 847 14719 68 19 10 chr5 34380900 34381293 -118155966 + L1VL2 LINE L1 2564 2986 -629 6 847 27 62 0 0 chr5 34381852 34381900 -118155359 + AT_rich Low_complexity Low_complexity 1 48 0 6 847 4652 89 47 7 chr5 34382121 34382874 -118154385 - Lx3_Mus LINE L1 -1037 5972 5203 6 847 6794 96 26 2 chr5 34382874 34383854 -118153405 + Lx3_Mus LINE L1 5997 7000 -9 6 847 272 317 16 69 chr5 34383979 34384155 -118153104 + ID_B1 SINE B4 20 175 -49 6 847 283 320 27 0 chr5 34384201 34384276 -118152983 + ID4 SINE ID 6 82 -1 6 847 675 195 16 16 chr5 34384363 34384488 -118152771 + B1_Mus2 SINE Alu 10 134 -13 6 847 252 0 0 0 chr5 34384488 34384516 -118152743 + (T)n Simple_repeat Simple_repeat 1 28 0 6 847 1123 89 7 0 chr5 34384516 34384662 -118152597 - B1_Mus1 SINE Alu 0 148 2 6 847 32820 36 0 3 chr5 34384764 34390999 -118146260 - L1Md_T LINE L1 0 6585 271 6 847 1576 236 80 6 chr5 34391001 34391351 -118145908 - MTEa LTR MaLR -3 376 1 6 847 322 333 39 14 chr5 34391353 34391486 -118145773 + PB1D10 SINE Alu 6 147 -2 6 847 403 241 61 26 chr5 34391534 34391649 -118145610 + B1F SINE Alu 30 148 -1 6 847 297 255 0 0 chr5 34391661 34391712 -118145547 + ID4 SINE ID 16 66 -17 6 847 1116 88 161 25 chr5 34392334 34392533 -118144726 - URR1A DNA MER1_type 0 226 1 7 847 1076 233 201 2 chr5 34392660 34392713 -118144546 + L1MC3 LINE L1 6573 6645 -1140 7 847 432 0 0 0 chr5 34392713 34392761 -118144498 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 847 1076 233 201 2 chr5 34392761 34392959 -118144300 + L1MC3 LINE L1 6646 6852 -933 7 847 378 0 0 0 chr5 34392959 34393001 -118144258 + (TC)n Simple_repeat Simple_repeat 2 43 0 7 847 1076 233 201 2 chr5 34393001 34393170 -118144089 + L1MC3 LINE L1 6853 7077 -708 7 847 289 303 105 11 chr5 34393254 34393444 -118143815 + L1MC3 LINE L1 7230 7437 -348 7 847 254 333 135 23 chr5 34393996 34394211 -118143048 + L2 LINE L2 2583 2821 -598 7 847 523 260 0 0 chr5 34395254 34395358 -118141901 + PB1D10 SINE Alu 11 114 -3 7 847 581 137 8 0 chr5 34395362 34395493 -118141766 + (CAGCC)n Simple_repeat Simple_repeat 2 133 0 7 847 352 247 12 24 chr5 34395496 34395579 -118141680 + ID4_ SINE ID 2 83 0 7 847 699 263 123 26 chr5 34396812 34397075 -118140184 - MTEb LTR MaLR 0 379 62 7 847 292 289 12 0 chr5 34397075 34397158 -118140101 + RLTR24 LTR ERV1 1 84 -445 7 847 346 186 0 0 chr5 34397460 34397519 -118139740 - MTEb LTR MaLR -314 65 7 7 847 4170 252 152 33 chr5 34397524 34397704 -118139555 - MTEb-int LTR MaLR -2 1578 1367 7 847 261 0 0 0 chr5 34397704 34397733 -118139526 + (TAA)n Simple_repeat Simple_repeat 2 30 0 7 847 4170 252 152 33 chr5 34397733 34398963 -118138296 - MTEb-int LTR MaLR -214 1366 2 7 847 336 100 16 62 chr5 34398972 34399036 -118138223 - MTEb LTR MaLR -20 359 299 7 847 296 263 66 0 chr5 34399187 34399263 -118137996 + B3A SINE B2 2 82 -116 7 847 23 0 0 0 chr5 34399519 34399542 -118137717 + AT_rich Low_complexity Low_complexity 1 23 0 7 847 425 240 45 103 chr5 34399608 34399653 -118137606 - L1MEc LINE L1 -3628 2691 2656 7 847 447 294 9 0 chr5 34399653 34399762 -118137497 - PB1D10 SINE Alu -7 110 1 7 847 425 240 45 103 chr5 34399762 34399939 -118137320 - L1MEc LINE L1 -3664 2655 2482 7 847 33 56 0 0 chr5 34400026 34400080 -118137179 + AT_rich Low_complexity Low_complexity 1 54 0 7 847 629 236 24 0 chr5 34400092 34400215 -118137044 - ID_B1 SINE B4 -20 204 79 7 847 654 258 90 0 chr5 34400288 34400443 -118136816 - ID_B1 SINE B4 -3 221 53 7 847 229 240 32 43 chr5 34400927 34401114 -118136145 - L1MEc LINE L1 -4037 2363 2179 7 847 250 258 102 48 chr5 34401471 34401761 -118135498 - L1MEc LINE L1 -4574 1841 1529 7 847 1208 55 0 0 chr5 34401908 34402053 -118135206 + B1_Mm SINE Alu 1 145 -2 7 847 207 0 0 0 chr5 34402053 34402076 -118135183 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 847 245 185 162 44 chr5 34402591 34402659 -118134600 - PB1D10 SINE Alu 0 117 42 7 847 6375 71 26 2 chr5 34403908 34404807 -118132452 - L1_Mus3 LINE L1 -15 6623 5704 7 847 338 147 0 14 chr5 34405058 34405127 -118132132 + CT-rich Low_complexity Low_complexity 2 69 0 7 847 7671 47 38 0 chr5 34405165 34406812 -118130447 - L1Md_F2 LINE L1 -14 6568 4834 7 847 749 255 0 0 chr5 34406812 34406953 -118130306 - B1_Mur1 SINE Alu -7 142 2 7 847 2773 21 28 0 chr5 34407008 34407335 -118129924 - L1Md_F3 LINE L1 -3 6581 6246 7 847 790 127 8 17 chr5 34407524 34407644 -118129615 - PB1D9 SINE Alu 0 120 2 7 847 186 125 62 0 chr5 34407684 34407732 -118129527 + (TA)n Simple_repeat Simple_repeat 2 52 0 7 847 340 217 35 0 chr5 34407769 34407912 -118129347 + (TA)n Simple_repeat Simple_repeat 1 148 0 7 847 362 160 0 74 chr5 34408171 34408252 -118129007 - L1_Rod LINE L1 -3533 2314 2240 7 847 1319 13 0 0 chr5 34408258 34408414 -118128845 + L1Md_A LINE L1 5431 5586 -297 7 847 8845 12 1 0 chr5 34408414 34409409 -118127850 + L1Md_A LINE L1 5587 6582 0 7 847 1075 63 35 7 chr5 34409421 34409553 -118127706 + B1_Mus2 SINE Alu 1 137 -10 7 847 257 0 30 0 chr5 34409553 34409586 -118127673 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 847 1969 195 103 4 chr5 34409606 34410100 -118127159 - L1_Rod LINE L1 -3604 2243 1701 7 847 3256 194 99 3 chr5 34410112 34411008 -118126251 - L1_Rod LINE L1 -4414 1433 455 7 847 262 400 64 6 chr5 34411160 34411331 -118125928 - MLT1J-int LTR MaLR -558 829 649 7 847 273 98 0 0 chr5 34411687 34411728 -118125531 - L1MD LINE L1 -1273 4873 4833 7 847 590 251 156 27 chr5 34412231 34412603 -118124656 - L1MD LINE L1 -1277 4869 4450 7 847 370 313 9 9 chr5 34412630 34412746 -118124513 - Tigger5 DNA MER2_type 0 2406 2291 7 847 501 339 67 0 chr5 34412742 34412937 -118124322 - Tigger5 DNA MER2_type -2164 242 35 7 847 229 276 19 9 chr5 34412981 34413087 -118124172 - L1M3 LINE L1 -1775 4365 4259 7 847 904 126 35 0 chr5 34413120 34413263 -118123996 + B1_Mur4 SINE Alu 3 150 0 7 847 202 104 41 20 chr5 34413263 34413312 -118123947 + A-rich Low_complexity Low_complexity 3 52 0 7 847 290 193 15 14 chr5 34413316 34413406 -118123853 - L1MD LINE L1 -1902 4244 4158 7 847 5551 139 47 13 chr5 34413813 34415093 -118122166 + Lx5 LINE L1 949 2344 -3533 7 847 2880 139 23 0 chr5 34415090 34415607 -118121652 + Lx5 LINE L1 3320 3848 -2029 7 847 5072 147 29 106 chr5 34415605 34416649 -118120610 + Lx5 LINE L1 4889 5842 -1208 7 847 1500 63 11 0 chr5 34416649 34416840 -118120419 + B2_Mm1t SINE B2 1 193 0 7 847 5072 142 53 36 chr5 34416840 34417551 -118119708 + Lx5 LINE L1 5843 6570 -480 7 847 1883 160 119 3 chr5 34417853 34418197 -118119062 - ORR1C2 LTR MaLR 0 384 1 7 847 523 255 179 15 chr5 34420096 34420291 -118116968 - L2a LINE L2 -7 3419 3193 7 847 541 126 36 9 chr5 34420583 34420695 -118116564 + Lx3_Mus LINE L1 6877 6991 -18 7 847 546 16 0 0 chr5 34420695 34420758 -118116501 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 7 847 1029 37 4 0 chr5 34420758 34420901 -118116358 + B2_Mm1t SINE B2 48 195 0 7 847 40 21 0 0 chr5 34422667 34422714 -118114545 + AT_rich Low_complexity Low_complexity 1 47 0 7 847 1367 141 109 25 chr5 34422977 34423260 -118113999 - Lx5 LINE L1 -3 7047 6741 7 847 364 210 73 32 chr5 34423259 34423382 -118113877 + L1M4 LINE L1 3752 3879 -2267 7 847 312 133 283 0 chr5 34424285 34424345 -118112914 + BC1_Mm scRNA scRNA 1 77 -75 7 847 495 0 0 0 chr5 34424345 34424400 -118112859 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 7 847 756 0 0 0 chr5 34424400 34424483 -118112776 + (GAGAA)n Simple_repeat Simple_repeat 2 85 0 7 847 334 208 186 32 chr5 34424852 34424976 -118112283 - L1MC3 LINE L1 -254 7531 7389 7 847 320 33 197 16 chr5 34425164 34425225 -118112034 - Lx2B LINE L1 -6 6994 6923 7 847 624 284 82 71 chr5 34425244 34425525 -118111734 - MTEb LTR MaLR 0 379 96 7 847 238 337 59 0 chr5 34425724 34425825 -118111434 + RMER12 LTR ERVK 743 849 -473 7 847 594 322 27 38 chr5 34425784 34425968 -118111291 - B3A SINE B2 -16 182 1 7 847 556 272 56 17 chr5 34425968 34426200 -118111059 - L1MC3 LINE L1 -1931 5854 5614 7 847 552 319 21 28 chr5 34426237 34426382 -118110877 + RSINE1 SINE B4 15 158 -7 7 847 278 264 14 0 chr5 34426390 34426462 -118110797 + MTEa LTR MaLR 294 366 -13 7 847 253 172 61 30 chr5 34426483 34426549 -118110710 - L1MC3 LINE L1 -133 7652 7585 7 847 392 200 82 0 chr5 34426536 34426621 -118110638 - L1MC3 LINE L1 -2198 5587 5496 7 847 765 22 0 0 chr5 34426971 34427062 -118110197 + (TC)n Simple_repeat Simple_repeat 1 91 0 7 847 180 192 77 0 chr5 34427182 34427234 -118110025 + L3 LINE CR1 862 917 -3572 7 847 553 305 84 16 chr5 34427243 34427613 -118109646 + Lx5 LINE L1 5 399 -6234 7 847 607 209 6 63 chr5 34427622 34427780 -118109479 + MER31B LTR ERV1 242 390 -76 7 847 482 273 143 10 chr5 34427835 34428135 -118109124 + Lx5 LINE L1 3339 3678 -2859 7 847 618 230 65 0 chr5 34428252 34428391 -118108868 + B1_Mur2 SINE Alu 2 149 0 7 847 445 209 190 3 chr5 34428435 34428633 -118108626 + Lx5 LINE L1 3910 4150 -2387 7 847 550 239 0 0 chr5 34428663 34428809 -118108450 + Lx5 LINE L1 6011 6145 -488 7 847 338 261 0 0 chr5 34429659 34429728 -118107531 + PB1 SINE Alu 1 69 -58 7 847 313 323 45 30 chr5 34429850 34429984 -118107275 + L1M5 LINE L1 5233 5368 -778 7 847 3267 204 52 58 chr5 34430035 34430847 -118106412 + RLTR40 LTR ERVK 1 807 -10 7 847 369 138 25 12 chr5 34431428 34431481 -118105778 + polypurine Low_complexity Low_complexity 3 57 0 7 847 1296 84 0 0 chr5 34431481 34431660 -118105599 + (GGAGAA)n Simple_repeat Simple_repeat 2 180 0 7 847 369 138 25 12 chr5 34431660 34431687 -118105572 + polypurine Low_complexity Low_complexity 58 84 0 7 847 185 83 0 27 chr5 34432471 34432508 -118104751 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 7 847 377 329 83 24 chr5 34432533 34432823 -118104436 + L1MEc LINE L1 415 721 -5679 7 847 1714 133 78 111 chr5 34432929 34433326 -118103933 + RMER1C Other Other 811 1194 -148 7 847 1667 269 67 74 chr5 34433345 34434034 -118103225 + RMER19C LTR ERVK 1 717 -20 7 847 1166 74 14 0 chr5 34434034 34434182 -118103077 + B1_Mur4 SINE Alu 1 150 0 7 847 436 207 45 0 chr5 34434213 34434324 -118102935 + RMER1C Other Other 1227 1342 0 7 847 1156 233 30 23 chr5 34434346 34434609 -118102650 - MTD LTR MaLR -28 391 127 7 847 322 152 0 4 chr5 34434609 34434662 -118102597 - MTD LTR MaLR -264 155 105 7 847 316 238 37 12 chr5 34434673 34434754 -118102505 + MTE2a LTR MaLR 290 372 -7 7 847 367 289 56 60 chr5 34434886 34435118 -118102141 + Lx8 LINE L1 5765 5995 -1478 7 847 864 204 96 5 chr5 34435280 34435467 -118101792 + B3 SINE B2 3 206 -10 7 847 854 108 65 0 chr5 34436073 34436212 -118101047 - B1_Mus1 SINE Alu 0 148 1 7 847 270 176 58 12 chr5 34436325 34436411 -118100848 + Lx5 LINE L1 6949 7038 -12 7 847 1212 80 0 17 chr5 34436411 34436641 -118100618 + (GGAA)n Simple_repeat Simple_repeat 1 225 0 7 847 927 31 8 30 chr5 34436642 34436775 -118100484 + (GGAAA)n Simple_repeat Simple_repeat 5 134 0 7 847 333 0 0 0 chr5 34436775 34436812 -118100447 + (GAAA)n Simple_repeat Simple_repeat 1 37 0 7 847 243 0 0 0 chr5 34436812 34436838 -118100421 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 7 847 375 41 0 0 chr5 34436838 34436886 -118100373 + (CAGGA)n Simple_repeat Simple_repeat 2 50 0 7 847 609 192 0 43 chr5 34436886 34437071 -118100188 + GA-rich Low_complexity Low_complexity 2 178 0 7 847 790 245 66 38 chr5 34437074 34437462 -118099797 + Lx8 LINE L1 6949 7193 -280 7 847 799 235 27 63 chr5 34437508 34437847 -118099412 + RLTR15 LTR ERVK 45 344 -15 7 847 452 289 26 102 chr5 34437854 34438158 -118099101 + Lx8 LINE L1 7191 7471 -2 7 847 400 186 10 19 chr5 34438291 34438395 -118098864 + CT-rich Low_complexity Low_complexity 2 104 0 7 847 271 103 0 0 chr5 34438475 34438514 -118098745 + U2 snRNA snRNA 1 39 -149 7 847 322 235 100 20 chr5 34438546 34438646 -118098613 + PB1D9 SINE Alu 13 120 0 7 847 594 88 39 0 chr5 34438646 34438748 -118098511 + (GGAGAA)n Simple_repeat Simple_repeat 3 108 0 7 847 521 274 109 19 chr5 34438846 34439299 -118097960 + L1ME1 LINE L1 5679 6178 -1 7 847 26 0 0 0 chr5 34439729 34439755 -118097504 + AT_rich Low_complexity Low_complexity 1 26 0 7 847 345 263 172 38 chr5 34439755 34439941 -118097318 + L1MD2 LINE L1 10 220 -6327 7 847 244 320 0 10 chr5 34440006 34440104 -118097155 + L1MD2 LINE L1 637 733 -5814 7 847 368 301 191 14 chr5 34440168 34440445 -118096814 + L1MD2 LINE L1 858 1175 -5465 7 847 183 100 0 0 chr5 34440480 34440510 -118096749 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 7 847 876 125 8 0 chr5 34440515 34440643 -118096616 - B1_Mur2 SINE Alu -19 130 2 7 847 1856 237 38 12 chr5 34441041 34441692 -118095567 + Lx9 LINE L1 5402 6109 -1535 8 847 323 44 22 0 chr5 34441739 34441784 -118095475 + (TA)n Simple_repeat Simple_repeat 1 46 0 8 847 483 248 267 5 chr5 34441799 34442020 -118095239 + Lx9 LINE L1 6327 6605 -1039 8 847 2288 186 163 24 chr5 34441999 34442673 -118094586 + Lx9 LINE L1 6870 7637 -7 8 847 603 203 102 0 chr5 34442680 34442808 -118094451 + B1_Mur2 SINE Alu 2 142 -7 8 847 523 276 91 3 chr5 34442817 34442963 -118094296 + B3 SINE B2 42 197 -1 8 847 673 271 104 141 chr5 34443804 34443929 -118093330 + MT2B LTR ERVL 16 128 -405 8 847 2931 143 132 0 chr5 34443929 34444446 -118092813 + RMER4B LTR ERVK 1 585 0 8 847 790 258 122 95 chr5 34444446 34444833 -118092426 + MT2B LTR ERVL 129 577 -24 8 847 1217 128 88 5 chr5 34444833 34445037 -118092222 + URR1B DNA MER1_type 5 225 0 8 847 790 254 128 81 chr5 34445037 34445061 -118092198 + MT2B LTR ERVL 578 601 0 8 847 900 164 7 14 chr5 34445291 34445439 -118091820 + B1_Mus1 SINE Alu 2 148 0 8 847 1182 271 0 93 chr5 34445605 34445918 -118091341 - B4 SINE B4 0 292 9 8 847 234 232 0 82 chr5 34445941 34445960 -118091299 + B4A SINE B4 76 89 -203 8 847 276 200 375 0 chr5 34445960 34446040 -118091219 + PB1D10 SINE Alu 2 111 -6 8 847 900 167 0 13 chr5 34446106 34446258 -118091001 + B1_Mur4 SINE Alu 1 150 0 8 847 927 213 131 222 chr5 34446939 34447525 -118089734 + MT2A LTR ERVL 1 533 0 8 847 4323 166 87 71 chr5 34448113 34448989 -118088270 - RMER19B LTR ERVK -12 890 1 8 847 297 0 0 0 chr5 34449661 34449694 -118087565 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 847 302 317 10 0 chr5 34450567 34450668 -118086591 + (CA)n Simple_repeat Simple_repeat 1 102 0 8 847 243 0 0 0 chr5 34450670 34450697 -118086562 + (TC)n Simple_repeat Simple_repeat 1 27 0 8 847 477 0 0 0 chr5 34450697 34450749 -118086510 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 847 3222 88 7 7 chr5 34451322 34451771 -118085488 + Lx3_Mus LINE L1 6550 6998 -11 8 847 646 211 48 27 chr5 34451834 34451980 -118085279 + B1F SINE Alu 1 149 0 8 847 385 131 33 0 chr5 34452441 34452502 -118084757 + RSINE1 SINE B4 43 105 -60 8 847 573 42 0 0 chr5 34452511 34452583 -118084676 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 847 1105 96 0 0 chr5 34453013 34453159 -118084100 + B1_Mus1 SINE Alu 3 148 0 8 847 186 143 0 0 chr5 34453160 34453195 -118084064 + (A)n Simple_repeat Simple_repeat 1 35 0 8 847 622 318 108 36 chr5 34453450 34453522 -118083737 - ORR1C2 LTR MaLR 0 359 284 8 847 899 150 7 7 chr5 34453522 34453663 -118083596 - B1_Mus2 SINE Alu -6 141 1 8 847 1225 179 33 19 chr5 34453663 34453923 -118083336 - ORR1C2 LTR MaLR -76 283 4 8 847 5451 191 77 67 chr5 34453925 34455419 -118081840 - ORR1C2-int LTR MaLR 0 1509 1 8 847 2234 128 55 16 chr5 34455419 34455784 -118081475 - ORR1C2 LTR MaLR 0 384 6 8 847 269 328 0 0 chr5 34456197 34456264 -118080995 + ID4 SINE ID 4 70 -13 8 847 524 267 69 0 chr5 34457255 34457386 -118079873 - ID_B1 SINE B4 -15 209 70 8 847 663 25 0 0 chr5 34458817 34458898 -118078361 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 8 847 2600 234 59 25 chr5 34459678 34460987 -118076272 + Lx6 LINE L1 5301 6675 -785 8 847 633 128 0 0 chr5 34460987 34461112 -118076147 + (TC)n Simple_repeat Simple_repeat 1 125 0 8 847 742 241 0 7 chr5 34461113 34461251 -118076008 - B1_Mus2 SINE Alu -6 141 5 8 847 907 263 152 16 chr5 34462855 34463209 -118074050 - MTD LTR MaLR 0 419 1 8 847 586 265 105 7 chr5 34463209 34463359 -118073900 + B4A SINE B4 64 228 -64 8 847 195 304 172 33 chr5 34463575 34463755 -118073504 - L2a LINE L2 -38 3388 3184 8 847 240 254 45 45 chr5 34464185 34464251 -118073008 - MLT1A1 LTR MaLR -271 137 72 8 847 250 198 0 36 chr5 34464533 34464617 -118072642 + GA-rich Low_complexity Low_complexity 5 85 0 8 847 635 304 63 52 chr5 34465577 34465848 -118071411 - B4 SINE B4 -18 274 1 8 847 394 187 187 0 chr5 34465856 34465947 -118071312 - PB1D10 SINE Alu 0 117 10 8 847 21 57 0 0 chr5 34466273 34466308 -118070951 + AT_rich Low_complexity Low_complexity 1 35 0 8 847 3306 217 150 43 chr5 34466389 34467646 -118069613 - RMER1A Other Other -6 1024 1 8 847 2049 251 57 21 chr5 34467879 34467935 -118069324 - Lx8 LINE L1 -5 7468 7420 8 847 2294 142 29 10 chr5 34467935 34468319 -118068940 - ORR1B1 LTR MaLR 0 394 4 8 847 2049 251 57 21 chr5 34468319 34468925 -118068334 - Lx8 LINE L1 -54 7419 6782 8 847 400 274 15 31 chr5 34469292 34469488 -118067771 + L1M4 LINE L1 4643 4835 -1311 8 847 533 229 9 52 chr5 34469493 34469608 -118067651 + PB1D7 SINE Alu 11 120 0 8 847 544 278 103 63 chr5 34469617 34469676 -118067583 + L1M4 LINE L1 4810 4871 -1275 8 847 1458 250 24 11 chr5 34469676 34469998 -118067261 + MTEa LTR MaLR 1 323 -56 8 847 213 39 0 0 chr5 34469998 34470024 -118067235 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 847 1458 250 24 11 chr5 34470024 34470073 -118067186 + MTEa LTR MaLR 324 376 -3 8 847 544 278 103 63 chr5 34470073 34470096 -118067163 + L1M4 LINE L1 4872 4887 -1259 8 847 1111 97 83 28 chr5 34470096 34470277 -118066982 + B2_Mm2 SINE B2 1 191 -4 8 847 544 278 103 63 chr5 34470277 34470479 -118066780 + L1M4 LINE L1 4888 5088 -1058 8 847 934 271 13 34 chr5 34470479 34470777 -118066482 - B4A SINE B4 0 292 1 8 847 544 278 103 63 chr5 34470777 34470848 -118066411 + L1M4 LINE L1 5089 5160 -986 8 847 1171 50 0 0 chr5 34470848 34470989 -118066270 + B1_Mus2 SINE Alu 2 142 -5 8 847 544 277 85 28 chr5 34470989 34471384 -118065875 + L1M4 LINE L1 5161 5596 -588 8 847 378 0 0 0 chr5 34471497 34471539 -118065720 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 8 847 859 54 18 0 chr5 34471539 34471651 -118065608 - B1_Mus1 SINE Alu -9 139 26 8 848 239 286 0 0 chr5 34472394 34472443 -118064816 - ID4_ SINE ID -33 50 2 8 848 340 314 62 22 chr5 34472702 34472881 -118064378 + Charlie2b DNA MER1_type 2090 2275 -507 8 848 491 112 281 0 chr5 34472885 34472974 -118064285 + B1_Mur4 SINE Alu 1 114 -36 8 848 567 0 0 0 chr5 34472977 34473040 -118064219 + (GAAA)n Simple_repeat Simple_repeat 1 63 0 8 848 410 198 21 0 chr5 34473040 34473136 -118064123 + G-rich Low_complexity Low_complexity 4 101 0 8 848 5102 97 12 3 chr5 34473152 34473878 -118063381 + Lx3_Mus LINE L1 6266 6998 -11 8 848 1024 199 161 12 chr5 34473919 34474322 -118062937 + Charlie2b DNA MER1_type 2288 2750 -32 8 848 563 246 108 0 chr5 34474406 34474536 -118062723 + RSINE1 SINE B4 2 145 -20 8 848 22 35 0 0 chr5 34474551 34474580 -118062679 + AT_rich Low_complexity Low_complexity 1 29 0 8 848 738 233 14 7 chr5 34474596 34474743 -118062516 + B1_Mur1 SINE Alu 2 149 0 8 848 747 124 106 23 chr5 34474779 34474911 -118062348 + B1_Mur4 SINE Alu 8 150 0 8 848 273 128 0 0 chr5 34474911 34474958 -118062301 + (A)n Simple_repeat Simple_repeat 1 47 0 8 848 1423 66 28 0 chr5 34475137 34475319 -118061940 + B2_Mm2 SINE B2 2 188 -7 8 848 466 271 55 13 chr5 34475877 34476001 -118061258 + B1_Mur1 SINE Alu 1 126 -21 8 848 913 152 21 0 chr5 34476214 34476359 -118060900 + B1_Mus1 SINE Alu 1 148 0 8 848 183 184 0 0 chr5 34476363 34476401 -118060858 + A-rich Low_complexity Low_complexity 3 40 0 8 848 551 308 114 8 chr5 34476557 34476812 -118060447 + B4A SINE B4 2 283 -9 8 848 387 0 0 0 chr5 34476834 34476877 -118060382 + (ACTG)n Simple_repeat Simple_repeat 2 44 0 8 848 202 400 0 0 chr5 34476887 34476952 -118060307 - MIR SINE MIR -184 78 14 8 848 235 345 17 0 chr5 34477121 34477179 -118060080 + AluF_3 SINE Alu 141 199 -112 8 848 453 62 0 0 chr5 34477363 34477428 -118059831 + (A)n Simple_repeat Simple_repeat 1 65 0 8 848 3501 170 156 19 chr5 34478126 34478892 -118058367 - RMER19B LTR ERVK 0 902 55 8 848 2744 51 26 0 chr5 34478894 34479245 -118058014 + MT2C_Mm LTR ERVL 1 360 -115 8 848 249 108 0 0 chr5 34479229 34479266 -118057993 + ORR1A0 LTR MaLR 290 326 0 8 848 14386 44 3 1 chr5 34479266 34481054 -118056205 + ORR1A0-int LTR MaLR 1 1792 0 8 848 2945 9 42 0 chr5 34481054 34481386 -118055873 + ORR1A0 LTR MaLR 1 346 0 8 848 567 124 22 0 chr5 34481737 34481820 -118055439 - RLTR25A LTR ERVK 0 1103 1019 8 848 822 64 9 18 chr5 34481820 34481931 -118055328 + RLTR20A LTR ERVK 1 110 -431 8 848 302 154 73 44 chr5 34481942 34482010 -118055249 - RMER19B LTR ERVK -832 70 1 8 848 305 274 14 0 chr5 34482614 34482687 -118054572 + LTR41 LTR ERVL 100 173 -585 8 848 417 256 154 6 chr5 34482682 34482851 -118054408 + LTR41 LTR ERVL 561 754 -14 8 848 328 172 210 16 chr5 34483379 34483503 -118053756 - L1MA4 LINE L1 -404 5896 5749 8 848 3543 158 93 3 chr5 34483514 34483577 -118053682 + MERVL_2A-int LTR ERVL 4932 5004 -757 8 848 468 0 0 0 chr5 34483577 34483629 -118053630 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 8 848 3543 158 93 3 chr5 34483629 34484261 -118052998 + MERVL_2A-int LTR ERVL 5005 5689 -72 8 848 303 222 0 14 chr5 34484270 34484343 -118052916 + ORR1A3-int LTR MaLR 568 639 -1324 8 848 343 143 0 0 chr5 34484343 34484399 -118052860 + MERVL_2A-int LTR ERVL 5706 5761 0 8 848 710 266 38 33 chr5 34484399 34484693 -118052566 + MT2A LTR ERVL 1 297 -196 8 848 581 154 114 9 chr5 34484693 34484798 -118052461 + B1_Mur4 SINE Alu 1 116 -34 8 848 232 294 108 0 chr5 34484797 34484899 -118052360 + MT2A LTR ERVL 167 300 -233 8 848 465 19 0 0 chr5 34484965 34485019 -118052240 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 848 303 136 314 0 chr5 34485057 34485165 -118052094 - L1MA4 LINE L1 -437 5752 5615 8 848 739 189 13 71 chr5 34485179 34485333 -118051926 - B1_Mur4 SINE Alu 0 150 6 8 848 234 286 11 42 chr5 34485345 34485440 -118051819 - L1MA4 LINE L1 -704 5596 5505 8 848 399 205 389 19 chr5 34485486 34485635 -118051624 - B3A SINE B2 -12 204 1 8 848 1300 261 180 34 chr5 34485637 34486546 -118050713 - L1MA4 LINE L1 -427 5453 4337 8 848 720 199 84 0 chr5 34486546 34486677 -118050582 - B1_Mur2 SINE Alu -6 143 2 8 848 1300 250 141 42 chr5 34486677 34486910 -118050349 - L1MA4 LINE L1 -1776 4367 4126 8 848 1603 42 0 16 chr5 34486910 34487104 -118050155 + B2_Mm1t SINE B2 1 191 -2 8 848 1300 250 141 42 chr5 34487104 34487151 -118050108 - L1MA4 LINE L1 -2018 4125 4077 8 848 492 315 34 7 chr5 34487177 34487324 -118049935 - RSINE1 SINE B4 -6 159 9 8 848 239 262 0 23 chr5 34487328 34487414 -118049845 - L1_Mur3 LINE L1 -1819 4061 3978 8 848 21 0 0 0 chr5 34487414 34487435 -118049824 + AT_rich Low_complexity Low_complexity 1 21 0 8 848 453 66 0 0 chr5 34487637 34487698 -118049561 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 848 536 301 30 0 chr5 34487806 34487939 -118049320 - RSINE1 SINE B4 -4 161 25 8 848 832 267 33 33 chr5 34487946 34488248 -118049011 - L1_Mur3 LINE L1 -1906 3974 3673 8 848 5327 142 78 6 chr5 34488402 34489499 -118047760 + MYSERV16_I-int LTR ERVK 1150 2325 -1 8 848 2455 139 35 82 chr5 34489500 34489963 -118047296 + BGLII_B LTR ERVK 1 441 0 8 848 1135 125 0 0 chr5 34490289 34490457 -118046802 + B2_Mm2 SINE B2 2 169 -26 8 848 218 56 28 0 chr5 34490658 34490694 -118046565 + (TATAA)n Simple_repeat Simple_repeat 3 39 0 8 848 238 269 107 71 chr5 34491002 34491114 -118046145 - MLT1J LTR MaLR -50 462 347 8 848 487 299 90 12 chr5 34491495 34491661 -118045598 - B4A SINE B4 -113 179 1 8 848 1176 61 0 0 chr5 34492619 34492766 -118044493 - B1_Mus1 SINE Alu 0 148 2 8 848 314 231 88 0 chr5 34492842 34492933 -118044326 + B1F SINE Alu 40 138 -11 8 848 241 217 16 62 chr5 34492959 34493023 -118044236 + ID4 SINE ID 4 64 -19 9 848 776 218 0 0 chr5 34493033 34493166 -118044093 + B1_Mus1 SINE Alu 5 137 -11 9 848 7405 77 7 2 chr5 34493506 34495090 -118042169 - L1_Mus1 LINE L1 0 6567 4972 9 848 3674 106 5 2 chr5 34495086 34495645 -118041614 + L1_Mus1 LINE L1 4417 4977 -906 9 848 391 357 76 7 chr5 34496312 34496456 -118040803 + RSINE1 SINE B4 2 155 -10 9 848 660 246 15 0 chr5 34496864 34496994 -118040265 + B1F2 SINE Alu 16 147 -2 9 848 614 225 116 27 chr5 34497031 34497177 -118040082 + RSINE1 SINE B4 3 161 -4 9 848 576 212 51 7 chr5 34497201 34497339 -118039920 + B1F SINE Alu 5 148 -1 9 848 327 333 45 70 chr5 34497766 34497966 -118039293 + RMER15 LTR ERVL 363 557 -18 9 848 1105 101 0 7 chr5 34498313 34498462 -118038797 + B1_Mus1 SINE Alu 1 148 0 9 848 534 89 178 0 chr5 34498497 34498587 -118038672 + B2_Mm2 SINE B2 2 107 -88 9 848 960 42 0 0 chr5 34498594 34498714 -118038545 + B1_Mus1 SINE Alu 29 148 0 9 848 362 98 0 0 chr5 34498727 34498778 -118038481 + B2_Mm2 SINE B2 111 161 -34 9 848 324 0 0 0 chr5 34498778 34498814 -118038445 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 9 848 2890 41 5 16 chr5 34498953 34499324 -118037935 + L1Md_F2 LINE L1 6202 6568 -14 9 848 738 206 38 0 chr5 34499482 34499613 -118037646 - B1_Mur2 SINE Alu -12 137 2 9 848 314 252 178 25 chr5 34499802 34499920 -118037339 + ID_B1 SINE B4 89 224 0 9 848 5092 102 15 64 chr5 34500126 34500189 -118037070 + Lx3C LINE L1 5056 5116 -770 1 848 1192 75 0 0 chr5 34500189 34500336 -118036923 + B1_Mus2 SINE Alu 1 147 0 2 848 5092 94 25 59 chr5 34500336 34501515 -118035744 + Lx3C LINE L1 5117 6226 -750 1 848 1760 115 152 0 chr5 34501498 34501794 -118035465 + Lx3C LINE L1 6456 6796 -180 1 848 434 97 28 0 chr5 34501794 34501866 -118035393 + Lx3C LINE L1 6898 6971 -5 1 848 29 0 0 0 chr5 34501866 34501895 -118035364 + AT_rich Low_complexity Low_complexity 1 29 0 3 848 526 209 170 14 chr5 34501916 34502057 -118035202 + RSINE1 SINE B4 3 165 0 4 848 23 54 0 0 chr5 34502057 34502094 -118035165 + AT_rich Low_complexity Low_complexity 1 37 0 5 848 714 225 7 0 chr5 34502501 34502639 -118034620 + B1_Mur4 SINE Alu 11 149 -1 6 848 318 132 0 0 chr5 34502639 34502692 -118034567 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 7 848 458 273 50 0 chr5 34502732 34502853 -118034406 + ID_B1 SINE B4 98 224 0 8 848 309 151 90 34 chr5 34502862 34502951 -118034308 + MYSERV16_I-int LTR ERVK 820 913 -1413 9 848 313 233 144 17 chr5 34502951 34503069 -118034190 + RMER4A LTR ERVK 298 430 -36 1 848 3660 177 99 12 chr5 34503069 34504255 -118033004 + MYSERV16_I-int LTR ERVK 1037 2326 0 9 848 2313 177 23 77 chr5 34504255 34504813 -118032446 + RLTR11A LTR ERVK 1 528 0 9 848 610 165 39 0 chr5 34504972 34505075 -118032184 + U6 snRNA snRNA 1 107 0 1 848 23 0 0 0 chr5 34505650 34505673 -118031586 + AT_rich Low_complexity Low_complexity 1 23 0 1 848 270 279 156 44 chr5 34505702 34505792 -118031467 + PB1D10 SINE Alu 11 110 -7 1 848 768 217 81 53 chr5 34505901 34506110 -118031149 - B3 SINE B2 -1 215 1 1 848 35 54 0 0 chr5 34506401 34506457 -118030802 + AT_rich Low_complexity Low_complexity 1 56 0 1 848 338 295 180 0 chr5 34506619 34506741 -118030518 + ID_B1 SINE B4 79 222 -2 1 848 560 154 44 0 chr5 34507260 34507351 -118029908 - B1_Mus2 SINE Alu -13 134 40 1 848 287 111 90 0 chr5 34507401 34507454 -118029805 - B1_Mus1 SINE Alu -43 77 21 1 848 1220 273 31 17 chr5 34507503 34507790 -118029469 - B4A SINE B4 0 292 2 1 848 518 259 28 32 chr5 34507812 34507954 -118029305 - B1F SINE Alu -1 148 9 2 848 348 276 34 11 chr5 34507984 34508072 -118029187 - B1F SINE Alu -48 101 12 2 848 315 191 0 0 chr5 34509206 34509274 -118027985 + (CATA)n Simple_repeat Simple_repeat 3 70 0 2 848 21 36 0 0 chr5 34509347 34509375 -118027884 + AT_rich Low_complexity Low_complexity 1 28 0 2 848 43 71 0 0 chr5 34509878 34509963 -118027296 + AT_rich Low_complexity Low_complexity 1 85 0 2 848 454 211 72 18 chr5 34513114 34513225 -118024034 - PB1D7 SINE Alu -1 119 3 2 848 185 326 27 113 chr5 34513493 34513714 -118023545 - L2 LINE L2 -1503 1916 1715 2 848 21 36 0 0 chr5 34514185 34514213 -118023046 + AT_rich Low_complexity Low_complexity 1 28 0 2 848 225 0 0 0 chr5 34514366 34514391 -118022868 + (A)n Simple_repeat Simple_repeat 1 25 0 2 848 486 0 0 0 chr5 34515298 34515352 -118021907 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 848 235 266 235 17 chr5 34515398 34515513 -118021746 + MIRb SINE MIR 119 258 -10 3 848 243 88 0 0 chr5 34518586 34518620 -118018639 + (T)n Simple_repeat Simple_repeat 1 34 0 3 848 764 115 0 8 chr5 34519105 34519228 -118018031 + (TTCC)n Simple_repeat Simple_repeat 2 123 0 3 848 202 123 35 0 chr5 34522348 34522405 -118014854 + T-rich Low_complexity Low_complexity 2 60 0 3 848 368 213 167 21 chr5 34522471 34522615 -118014644 + Lx7 LINE L1 7532 7696 0 3 848 262 280 124 72 chr5 34523382 34523632 -118013627 + L1ME4a LINE L1 5860 6122 -2 3 848 316 282 113 19 chr5 34523661 34523820 -118013439 + L1M5 LINE L1 5198 5371 -775 3 848 296 329 0 0 chr5 34528812 34528891 -118008368 + MIR SINE MIR 96 174 -88 3 848 24 32 0 0 chr5 34530100 34530131 -118007128 + GC_rich Low_complexity Low_complexity 1 31 0 3 848 24 67 0 0 chr5 34530225 34530270 -118006989 + GC_rich Low_complexity Low_complexity 1 45 0 3 848 193 336 73 27 chr5 34532286 34532396 -118004863 - L2 LINE L2 -2858 561 447 4 848 342 0 0 0 chr5 34532957 34532995 -118004264 + (CCA)n Simple_repeat Simple_repeat 3 40 0 4 848 417 20 0 0 chr5 34532995 34533045 -118004214 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 848 237 295 75 69 chr5 34533366 34533526 -118003733 + LTR41 LTR ERVL 171 331 -437 4 848 297 261 0 28 chr5 34533643 34533714 -118003545 + MIRb SINE MIR 116 184 -84 4 848 455 301 65 9 chr5 34533908 34534123 -118003136 + ORSL-2b DNA Tip100 27 253 -255 4 848 432 0 0 0 chr5 34534640 34534688 -118002571 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 848 1274 234 99 3 chr5 34535193 34535340 -118001919 + ORR1D2 LTR MaLR 5 165 -205 4 848 522 0 0 0 chr5 34535340 34535398 -118001861 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 848 1274 234 99 3 chr5 34535398 34535584 -118001675 + ORR1D2 LTR MaLR 166 369 -1 4 848 213 330 106 0 chr5 34536012 34536106 -118001153 + MIRb SINE MIR 112 215 -53 4 848 243 0 0 0 chr5 34536282 34536309 -118000950 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 848 689 152 106 70 chr5 34536329 34536471 -118000788 - B1_Mur3 SINE Alu -2 147 1 5 848 198 0 0 0 chr5 34536750 34536772 -118000487 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 848 1916 224 39 17 chr5 34542446 34542854 -117994405 - MTD LTR MaLR 0 419 3 5 848 632 336 118 19 chr5 34543166 34543592 -117993667 + MLT1C LTR MaLR 1 450 -17 5 848 876 234 61 20 chr5 34543879 34544075 -117993184 + B3 SINE B2 7 210 -6 5 848 481 227 43 43 chr5 34545474 34545589 -117991670 - B1_Mur1 SINE Alu -34 115 1 5 848 763 189 14 34 chr5 34545597 34545745 -117991514 - ID_B1 SINE B4 -2 222 78 5 848 394 274 103 9 chr5 34545739 34545846 -117991413 - PB1D10 SINE Alu 0 117 1 5 848 513 332 65 9 chr5 34545847 34546172 -117991087 + L1MB4 LINE L1 5648 5990 -190 5 848 587 295 7 0 chr5 34546448 34546587 -117990672 + RSINE1 SINE B4 12 151 -14 6 848 943 162 7 0 chr5 34546649 34546797 -117990462 + B1_Mur4 SINE Alu 2 150 0 6 848 3063 74 60 0 chr5 34547002 34547437 -117989822 - L1_Mus2 LINE L1 -194 6372 5912 6 848 1547 88 0 26 chr5 34547437 34547669 -117989590 + L1Md_F2 LINE L1 6357 6582 0 6 848 1619 193 57 12 chr5 34548064 34548395 -117988864 + MTC LTR MaLR 58 403 -18 6 848 1075 267 120 14 chr5 34548558 34548926 -117988333 + MLT1C LTR MaLR 1 407 -60 6 848 360 0 0 0 chr5 34550350 34550390 -117986869 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 848 254 148 0 69 chr5 34553260 34553347 -117983912 + T-rich Low_complexity Low_complexity 1 81 0 6 848 2826 61 42 0 chr5 34553359 34553719 -117983540 - L1_Mus1 LINE L1 -1 6566 6192 6 848 733 115 18 0 chr5 34553727 34553840 -117983419 - B1_Mur4 SINE Alu 0 150 36 6 848 189 0 0 0 chr5 34553863 34553884 -117983375 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 848 868 201 86 15 chr5 34554181 34554378 -117982881 - B3 SINE B2 -4 212 2 7 848 253 167 0 0 chr5 34555394 34555436 -117981823 + MT2A LTR ERVL 1 42 -491 7 848 407 260 54 47 chr5 34555450 34555579 -117981680 + MTE2b LTR MaLR 13 142 -237 7 848 2155 188 28 0 chr5 34555483 34555871 -117981388 + MT2A LTR ERVL 45 443 -90 7 848 567 78 0 0 chr5 34555897 34555974 -117981285 + (TA)n Simple_repeat Simple_repeat 1 77 0 7 848 237 211 0 0 chr5 34556031 34556083 -117981176 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 848 279 98 16 32 chr5 34556724 34556787 -117980472 + (GAAAA)n Simple_repeat Simple_repeat 4 65 0 7 848 402 272 26 37 chr5 34557400 34557526 -117979733 - PB1D7 SINE Alu -1 119 1 7 848 325 296 83 44 chr5 34557691 34558062 -117979197 + L1MB7 LINE L1 5609 6000 -184 7 848 270 240 20 0 chr5 34560780 34560830 -117976429 + ID4 SINE ID 6 56 -27 7 848 1253 178 9 9 chr5 34560880 34561095 -117976164 - B3 SINE B2 0 216 2 8 848 1151 144 118 5 chr5 34561112 34561315 -117975944 - URR1A DNA MER1_type 0 226 1 8 848 510 259 7 67 chr5 34561915 34562064 -117975195 + Lx8 LINE L1 6261 6400 -1073 8 848 1654 187 126 43 chr5 34562573 34562947 -117974312 - MTD LTR MaLR -14 405 1 8 848 1224 239 132 20 chr5 34563158 34563499 -117973760 - MTEa LTR MaLR 0 379 1 8 848 3309 48 5 0 chr5 34563608 34564002 -117973257 + MTA_Mm LTR MaLR 1 396 0 8 848 482 296 36 22 chr5 34564153 34564216 -117973043 - L1MEg LINE L1 -947 5199 5133 8 848 326 291 13 0 chr5 34564216 34564295 -117972964 - ID4 SINE ID -1 82 3 8 848 482 296 36 22 chr5 34564295 34564456 -117972803 - L1MEg LINE L1 -1014 5132 4972 8 848 328 273 85 0 chr5 34564634 34564799 -117972460 - L1MEg LINE L1 -2629 3517 3339 8 848 1193 43 7 0 chr5 34564806 34564947 -117972312 - B1_Mus2 SINE Alu -1 146 5 8 848 594 125 9 18 chr5 34564982 34565096 -117972163 + CT-rich Low_complexity Low_complexity 2 114 0 8 848 230 263 0 0 chr5 34565114 34565152 -117972107 - B1F2 SINE Alu -109 40 3 9 848 354 23 0 0 chr5 34565157 34565200 -117972059 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 848 604 274 119 24 chr5 34565220 34565652 -117971607 - L1MEg LINE L1 -4819 1423 925 8 848 231 36 0 0 chr5 34565688 34565716 -117971543 + (TTG)n Simple_repeat Simple_repeat 2 29 0 9 848 941 169 0 7 chr5 34565721 34565864 -117971395 - B1_Mur3 SINE Alu -5 144 3 9 848 335 322 147 14 chr5 34565873 34566084 -117971175 - L1MEg LINE L1 -5226 910 672 8 848 315 0 0 0 chr5 34568845 34568880 -117968379 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 848 314 33 67 0 chr5 34568882 34568942 -117968317 + (GA)n Simple_repeat Simple_repeat 2 65 0 9 848 790 248 109 49 chr5 34568947 34569231 -117968028 - MLT2D LTR ERVL -109 305 5 9 848 665 302 76 57 chr5 34569248 34569774 -117967485 - L1M4 LINE L1 -1222 4924 4389 9 848 405 218 13 0 chr5 34569793 34569871 -117967388 + ID4 SINE ID 3 81 -2 9 848 609 253 65 0 chr5 34570182 34570336 -117966923 + RSINE1 SINE B4 2 165 0 9 848 545 212 6 0 chr5 34570354 34570533 -117966726 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 848 725 216 111 79 chr5 34570650 34570866 -117966393 + ID_B1 SINE B4 2 224 0 1 848 800 190 15 42 chr5 34570891 34571082 -117966177 + B3 SINE B2 3 183 -10 1 848 225 0 0 0 chr5 34572195 34572220 -117965039 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 1 848 217 132 88 70 chr5 34572863 34572874 -117964385 + PB1D10 SINE Alu 50 107 -10 1 848 262 196 43 0 chr5 34572874 34572920 -117964339 + ID_B1 SINE B4 167 214 -10 1 848 246 311 130 77 chr5 34574298 34574545 -117962714 + LTR53 LTR ERVL 22 281 -238 1 848 631 246 152 30 chr5 34579104 34579301 -117957958 + B4A SINE B4 1 221 -71 1 848 211 309 36 24 chr5 34579907 34579990 -117957269 - PB1D9 SINE Alu -1 119 36 1 848 318 87 0 0 chr5 34580011 34580057 -117957202 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 848 809 302 65 35 chr5 34580092 34580353 -117956906 - B4A SINE B4 -22 270 2 1 848 341 258 158 50 chr5 34581083 34581376 -117955883 + L1M4 LINE L1 3395 3737 -2409 1 848 543 260 57 0 chr5 34581393 34581516 -117955743 - ID_B1 SINE B4 -8 216 87 1 848 280 289 47 88 chr5 34581394 34581542 -117955717 + YREP_Mm Unknown Unknown 186 327 -1485 1 848 232 281 15 15 chr5 34581676 34581741 -117955518 - ID4 SINE ID -16 67 3 1 848 261 253 198 10 chr5 34582154 34582250 -117955009 + PB1D10 SINE Alu 3 116 -1 1 848 203 290 123 38 chr5 34582343 34582453 -117954806 - L2a LINE L2 -37 3389 3218 1 848 592 257 31 16 chr5 34582480 34582693 -117954566 + L1M4 LINE L1 3855 4082 -2064 1 848 695 225 109 33 chr5 34582810 34582994 -117954265 + B3A SINE B2 1 198 0 1 848 329 216 78 22 chr5 34583135 34583225 -117954034 + PB1 SINE Alu 26 120 -7 1 848 1493 63 15 20 chr5 34583271 34583466 -117953793 - B2_Mm2 SINE B2 0 195 2 1 848 372 314 263 40 chr5 34583475 34583727 -117953532 + MER21B LTR ERV1 39 346 -517 1 848 300 382 28 0 chr5 34584037 34584215 -117953044 + L1MD LINE L1 4280 4462 -1684 1 848 477 306 9 0 chr5 34586303 34586414 -117950845 + PB1D10 SINE Alu 1 112 -5 1 848 204 40 0 0 chr5 34586467 34586492 -117950767 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1 848 256 284 11 80 chr5 34586947 34587035 -117950224 + ID4 SINE ID 2 83 0 1 848 923 84 60 0 chr5 34587221 34587388 -117949871 + (TTTCC)n Simple_repeat Simple_repeat 3 179 0 1 848 744 294 65 82 chr5 34587885 34588193 -117949066 + B4 SINE B4 1 292 0 1 848 2225 134 116 49 chr5 34588198 34588629 -117948630 - RMER4A LTR ERVK 0 466 7 1 848 272 322 46 0 chr5 34588689 34588776 -117948483 + RSINE1 SINE B4 44 134 -31 1 848 218 342 0 27 chr5 34589448 34589559 -117947700 + (TATATG)n Simple_repeat Simple_repeat 4 111 0 1 848 189 0 0 0 chr5 34589703 34589724 -117947535 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 848 315 0 0 0 chr5 34589724 34589758 -117947501 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 848 216 0 0 0 chr5 34590273 34590297 -117946962 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 848 1021 149 201 0 chr5 34590299 34590473 -117946786 - B3 SINE B2 -3 213 5 1 848 531 234 14 7 chr5 34590698 34590832 -117946427 - RCHARR1 DNA MER1_type -15 959 825 1 848 808 270 66 70 chr5 34590832 34591103 -117946156 + B4 SINE B4 2 271 -21 1 848 189 0 0 0 chr5 34591158 34591179 -117946080 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 848 749 40 10 0 chr5 34591179 34591280 -117945979 + (CA)n Simple_repeat Simple_repeat 1 102 0 1 848 183 299 153 10 chr5 34594202 34594300 -117942959 + L4 LINE RTE 875 986 -1043 1 848 189 0 0 0 chr5 34594885 34594906 -117942353 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 848 443 310 0 33 chr5 34594908 34595028 -117942231 - PB1 SINE Alu -11 116 1 1 848 180 0 0 0 chr5 34595248 34595268 -117941991 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 1 848 234 122 24 24 chr5 34595340 34595382 -117941877 + RSINE1 SINE B4 21 62 -103 1 848 349 306 41 14 chr5 34595884 34596030 -117941229 - L1MB8 LINE L1 -6 6172 6023 1 848 814 204 0 14 chr5 34596030 34596169 -117941090 + B1_Mur4 SINE Alu 1 137 -13 1 848 561 105 0 0 chr5 34596169 34596255 -117941004 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 1 848 297 100 0 0 chr5 34596281 34596331 -117940928 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 848 320 219 35 38 chr5 34596336 34596457 -117940802 - L1MB8 LINE L1 -186 5993 5879 1 848 313 297 95 63 chr5 34596480 34596638 -117940621 + MLT1A LTR MaLR 1 163 -211 1 848 755 231 19 24 chr5 34596645 34596845 -117940414 + B4A SINE B4 1 194 -98 1 848 293 291 168 17 chr5 34596792 34596911 -117940348 - B4 SINE B4 -84 208 72 1 848 590 220 0 0 chr5 34597277 34597377 -117939882 - B1_Mus2 SINE Alu 0 147 48 1 848 283 301 9 64 chr5 34597573 34597683 -117939576 + B4A SINE B4 8 111 -181 1 848 1017 32 0 8 chr5 34597796 34597921 -117939338 - B1_Mus1 SINE Alu -9 139 16 1 848 579 264 18 65 chr5 34597947 34598117 -117939142 - RSINE1 SINE B4 0 165 4 1 848 418 280 54 34 chr5 34598143 34598291 -117938968 - RSINE1 SINE B4 -10 155 5 1 848 1258 252 95 14 chr5 34598291 34598637 -117938622 + MTEb LTR MaLR 3 376 -3 1 848 937 135 13 7 chr5 34598654 34598803 -117938456 - B1_Mur4 SINE Alu 0 150 1 1 848 460 248 142 18 chr5 34598975 34599193 -117938066 + L1ME2 LINE L1 5649 5893 -271 1 848 430 218 37 56 chr5 34599394 34599501 -117937758 - MTEb LTR MaLR 0 379 275 1 848 357 296 55 23 chr5 34599572 34599700 -117937559 - MTEb LTR MaLR -224 135 4 1 848 244 298 28 71 chr5 34599832 34599973 -117937286 + MT2B2 LTR ERVL 123 257 -327 1 848 286 286 70 70 chr5 34599856 34599984 -117937275 - YREP_Mm Unknown Unknown -1479 333 206 1 848 522 250 83 0 chr5 34599886 34599994 -117937265 + ID_B1 SINE B4 87 203 -21 1 848 246 32 0 0 chr5 34600204 34600235 -117937024 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 848 602 208 107 8 chr5 34600235 34600355 -117936904 - B1_Mur1 SINE Alu -10 139 7 1 848 274 217 238 0 chr5 34600367 34600510 -117936749 - Charlie2b DNA MER1_type -361 2421 2245 1 848 432 212 59 29 chr5 34600859 34600961 -117936298 - B3A SINE B2 -92 106 2 1 848 1484 73 5 5 chr5 34602102 34602295 -117934964 + B2_Mm2 SINE B2 2 194 -1 1 849 1412 71 5 21 chr5 34603111 34603299 -117933960 + B2_Mm2 SINE B2 2 186 -9 1 849 1141 88 0 7 chr5 34603335 34603484 -117933775 + B1_Mus1 SINE Alu 1 148 0 1 849 197 0 0 67 chr5 34603484 34603514 -117933745 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 1 849 442 0 35 0 chr5 34603786 34603844 -117933415 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 849 825 225 35 40 chr5 34603895 34603911 -117933348 - B3A SINE B2 0 198 183 1 849 447 19 0 0 chr5 34603911 34603963 -117933296 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 849 825 225 35 40 chr5 34603963 34604145 -117933114 - B3A SINE B2 -16 182 1 1 849 641 264 8 116 chr5 34604158 34604404 -117932855 - B4 SINE B4 -68 224 4 1 849 300 293 40 24 chr5 34604630 34604756 -117932503 + ORR1E LTR MaLR 9 136 -223 1 849 8754 9 0 0 chr5 34604787 34606493 -117930766 - L1Md_T LINE L1 0 6582 4877 1 849 13927 23 0 0 chr5 34606494 34608188 -117929071 + L1Md_T LINE L1 3176 4869 -1014 1 849 569 158 239 26 chr5 34608481 34608598 -117928661 + B1_Mus1 SINE Alu 7 148 0 1 849 270 73 0 0 chr5 34608601 34608642 -117928617 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 1 849 333 244 19 34 chr5 34610118 34610206 -117927053 - ID4_ SINE ID -51 101 7 1 849 321 264 151 16 chr5 34610949 34611134 -117926125 - L1MB3 LINE L1 -38 6145 5936 1 849 1579 58 0 0 chr5 34611209 34611399 -117925860 - B2_Mm1a SINE B2 -2 191 2 1 849 826 214 107 0 chr5 34611538 34611706 -117925553 + ID_B1 SINE B4 5 190 -34 1 849 318 299 25 17 chr5 34612157 34612276 -117924983 - MLT1E3 LTR MaLR -6 618 499 1 849 322 242 49 99 chr5 34613160 34613272 -117923987 + L1MB5 LINE L1 6007 6112 -62 1 849 1213 113 11 0 chr5 34613272 34613457 -117923802 - B2_Mm1t SINE B2 -4 189 3 1 849 322 242 49 99 chr5 34613457 34613486 -117923773 + L1MB5 LINE L1 6113 6141 -33 1 849 243 321 35 17 chr5 34613496 34613612 -117923647 + ID4 SINE ID 12 129 -23 1 849 619 240 24 68 chr5 34613659 34613865 -117923394 - B3A SINE B2 0 198 2 1 849 228 67 0 0 chr5 34613878 34613908 -117923351 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1 849 1105 48 7 7 chr5 34614298 34614444 -117922815 + B1_Mus1 SINE Alu 2 147 -1 1 849 210 156 0 0 chr5 34614448 34614493 -117922766 + A-rich Low_complexity Low_complexity 1 45 0 1 849 747 204 69 30 chr5 34614509 34614711 -117922548 - B3 SINE B2 -5 211 2 1 849 453 184 38 28 chr5 34614819 34614925 -117922334 - PB1D7 SINE Alu -7 113 7 1 849 210 71 0 0 chr5 34615250 34615278 -117921981 + (A)n Simple_repeat Simple_repeat 1 28 0 1 849 248 274 29 10 chr5 34615935 34616038 -117921221 - L1ME1 LINE L1 -227 5952 5848 1 849 225 303 43 122 chr5 34617643 34617782 -117919477 - L2b LINE L2 -135 3240 3113 1 849 1654 210 166 67 chr5 34620019 34620575 -117916684 + RMER19C LTR ERVK 1 611 0 1 849 315 0 0 0 chr5 34620615 34620650 -117916609 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 849 1198 208 226 0 chr5 34620701 34621028 -117916231 - MTD LTR MaLR -18 401 1 1 849 1431 253 27 62 chr5 34621823 34622274 -117914985 + RMER19C LTR ERVK 138 572 -39 1 849 1353 56 39 0 chr5 34623197 34623377 -117913882 + B2_Mm2 SINE B2 1 187 -8 1 849 1189 54 0 0 chr5 34623377 34623524 -117913735 + B1_Mus1 SINE Alu 1 148 0 2 849 299 288 0 0 chr5 34623544 34623624 -117913635 + RSINE1 SINE B4 1 80 -85 2 849 258 282 0 53 chr5 34623629 34623704 -117913555 - L1M3 LINE L1 -413 5758 5688 2 849 328 309 91 65 chr5 34624490 34624753 -117912506 - MLT1J2 LTR MaLR -29 419 150 2 849 218 324 0 0 chr5 34625159 34625227 -117912032 - MIRb SINE MIR -83 185 118 2 849 783 315 30 11 chr5 34626327 34626590 -117910669 + B4A SINE B4 21 288 -4 2 849 222 37 0 0 chr5 34626590 34626617 -117910642 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2 849 541 283 7 0 chr5 34626623 34626768 -117910491 + RSINE1 SINE B4 3 148 -17 2 849 228 67 0 0 chr5 34626780 34626810 -117910449 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 849 2950 48 7 37 chr5 34628543 34628951 -117908308 - MTA_Mm LTR MaLR 0 396 1 2 849 258 32 0 0 chr5 34629080 34629111 -117908148 + (TTG)n Simple_repeat Simple_repeat 2 32 0 2 849 578 90 22 0 chr5 34631595 34631684 -117905575 + (TCCC)n Simple_repeat Simple_repeat 3 93 0 2 849 236 281 39 59 chr5 34631991 34632093 -117905166 + BC1_Mm scRNA scRNA 1 100 -52 2 849 889 220 19 9 chr5 34632102 34632313 -117904946 + B3 SINE B2 2 214 -2 2 849 462 276 40 27 chr5 34632318 34632466 -117904793 + B4 SINE B4 79 228 -64 2 849 890 59 0 0 chr5 34632466 34632585 -117904674 + B1_Mus2 SINE Alu 1 119 -28 2 849 1224 94 67 0 chr5 34632978 34633158 -117904101 + B2_Mm1t SINE B2 2 193 0 2 849 322 365 85 31 chr5 34633228 34633488 -117903771 - MLT1J LTR MaLR -204 308 35 2 849 2564 144 85 20 chr5 34633510 34634006 -117903253 - RLTR11A LTR ERVK 0 528 1 2 849 258 226 0 88 chr5 34634380 34634448 -117902811 + B4A SINE B4 84 145 -147 2 849 393 220 4 49 chr5 34634387 34634509 -117902750 + PB1D10 SINE Alu 1 119 -1 2 849 470 264 25 222 chr5 34635052 34635407 -117901852 + MTE2b LTR MaLR 16 300 -79 2 849 230 316 26 0 chr5 34635472 34635548 -117901711 - ID2 SINE ID -1 82 5 2 849 1126 61 0 0 chr5 34635898 34636045 -117901214 + B1_Mus1 SINE Alu 2 148 0 2 849 1006 126 31 71 chr5 34636121 34636317 -117900942 - B2_Mm2 SINE B2 -6 189 2 2 849 186 43 0 0 chr5 34636321 34636344 -117900915 + (T)n Simple_repeat Simple_repeat 1 23 0 2 849 204 97 0 0 chr5 34637415 34637446 -117899813 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 849 216 86 0 0 chr5 34637754 34637789 -117899470 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 849 378 0 0 0 chr5 34637789 34637830 -117899429 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 849 978 173 117 19 chr5 34638814 34639020 -117898239 + URR1A DNA MER1_type 1 226 0 2 849 855 235 45 5 chr5 34639387 34639588 -117897671 - MTE2a LTR MaLR -3 376 168 2 849 945 57 0 0 chr5 34640530 34640653 -117896606 + B1_Mus2 SINE Alu 13 135 -12 2 849 252 0 0 0 chr5 34640653 34640681 -117896578 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 849 191 292 28 0 chr5 34641029 34641101 -117896158 + L2 LINE L2 2322 2395 -1024 2 849 311 211 111 40 chr5 34643305 34643404 -117893855 - PB1D9 SINE Alu -14 106 1 2 849 357 277 149 56 chr5 34643548 34643816 -117893443 - L1MB4 LINE L1 -1 6179 5887 2 849 206 265 34 67 chr5 34644343 34644432 -117892827 - MIRc SINE MIR -62 206 121 2 849 2191 152 57 9 chr5 34645810 34646229 -117891030 - BGLII_B LTR ERVK -2 439 1 2 849 210 226 113 0 chr5 34646269 34646322 -117890937 + PB1 SINE Alu 1 59 -68 2 849 414 238 50 0 chr5 34646368 34646469 -117890790 - B3A SINE B2 -91 107 2 2 849 1496 47 5 5 chr5 34648782 34648976 -117888283 + B2_Mm2 SINE B2 2 195 0 2 849 272 299 11 22 chr5 34651471 34651560 -117885699 + (TGGA)n Simple_repeat Simple_repeat 2 89 0 2 849 531 256 74 15 chr5 34653050 34653185 -117884074 + ID_B1 SINE B4 1 143 -81 2 849 469 298 35 7 chr5 34653202 34653344 -117883915 - RSINE1 SINE B4 -18 147 2 2 849 547 117 0 19 chr5 34654567 34654672 -117882587 + (CTTG)n Simple_repeat Simple_repeat 1 103 0 2 849 885 177 0 0 chr5 34654672 34654819 -117882440 - B1_Mus1 SINE Alu -1 147 1 2 849 324 269 28 46 chr5 34654819 34654928 -117882331 + PB1D10 SINE Alu 11 117 0 2 849 922 325 201 14 chr5 34655009 34655497 -117881762 - MER21B LTR ERV1 -174 689 111 2 849 1085 68 0 13 chr5 34655639 34655788 -117881471 + B1_Mus1 SINE Alu 2 148 0 2 849 267 41 61 0 chr5 34655788 34655837 -117881422 + (CAAAA)n Simple_repeat Simple_repeat 4 55 0 2 849 256 374 30 30 chr5 34656281 34656449 -117880810 - MER21B LTR ERV1 -91 772 605 2 849 286 118 0 19 chr5 34657366 34657418 -117879841 - B2_Mm2 SINE B2 -98 97 47 2 849 1063 110 12 0 chr5 34657454 34657618 -117879641 - B2_Mm1t SINE B2 -26 167 2 2 849 189 107 0 0 chr5 34657956 34657984 -117879275 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 849 306 289 19 0 chr5 34657995 34658099 -117879160 - L1MDa LINE L1 -2669 3868 3763 2 849 800 174 0 0 chr5 34658141 34658273 -117878986 + B1_Mur1 SINE Alu 5 136 -13 2 849 330 24 0 0 chr5 34658273 34658315 -117878944 - MT2A LTR ERVL -1 532 491 2 849 332 155 0 14 chr5 34658315 34658387 -117878872 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 2 849 762 235 5 38 chr5 34658387 34658573 -117878686 - MT2B LTR ERVL -40 561 382 2 849 403 235 213 7 chr5 34658582 34658732 -117878527 - L1MDa LINE L1 -3856 2681 2501 2 849 433 312 39 31 chr5 34658736 34658865 -117878394 - RSINE1 SINE B4 -25 140 11 2 849 373 237 61 10 chr5 34658874 34658972 -117878287 - L1MDa LINE L1 -4145 2488 2386 2 849 316 217 84 28 chr5 34659090 34659161 -117878098 - B4A SINE B4 -2 290 216 2 849 462 219 98 38 chr5 34659200 34659333 -117877926 - RSINE1 SINE B4 -21 144 4 2 849 465 66 0 0 chr5 34659385 34659446 -117877813 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 849 558 238 113 35 chr5 34659446 34659677 -117877582 - RLTR15 LTR ERVK -66 293 45 2 849 331 249 149 75 chr5 34659769 34659943 -117877316 + L1MD LINE L1 2570 2756 -3390 2 849 347 230 0 0 chr5 34660012 34660086 -117877173 - B1_Mur1 SINE Alu -23 126 53 2 849 683 109 80 0 chr5 34660131 34660268 -117876991 + RMER17B LTR ERVK 316 463 -495 2 849 186 43 0 0 chr5 34660400 34660423 -117876836 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2 849 1108 75 7 0 chr5 34660425 34660571 -117876688 - B1_Mus1 SINE Alu 0 148 2 2 849 365 274 111 88 chr5 34660829 34660949 -117876310 - ORR1E LTR MaLR -135 224 107 2 849 1223 101 26 11 chr5 34660949 34660977 -117876282 - B2_Mm2 SINE B2 0 195 163 2 849 333 0 0 0 chr5 34660977 34661014 -117876245 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 2 849 1223 101 26 11 chr5 34661014 34661176 -117876083 - B2_Mm2 SINE B2 -33 162 3 2 849 365 274 111 88 chr5 34661176 34661271 -117875988 - ORR1E LTR MaLR -253 106 4 2 849 1107 88 0 0 chr5 34661355 34661502 -117875757 - B1_Mus2 SINE Alu 0 147 1 2 849 462 347 89 14 chr5 34661502 34661843 -117875416 - L1MDa LINE L1 -5381 1252 886 2 849 378 0 0 0 chr5 34661843 34661885 -117875374 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 849 392 315 0 0 chr5 34662907 34663018 -117874241 + PB1D10 SINE Alu 1 111 -6 2 849 929 116 7 40 chr5 34663175 34663327 -117873932 - B1_Mur3 SINE Alu -1 148 2 2 849 477 0 0 0 chr5 34663711 34663764 -117873495 + (TTTTG)n Simple_repeat Simple_repeat 5 57 0 2 849 240 324 14 14 chr5 34663767 34663839 -117873420 - ID4_ SINE ID -10 73 2 2 849 523 168 32 0 chr5 34664591 34664686 -117872573 + B3 SINE B2 5 102 -114 2 849 21 0 0 0 chr5 34664686 34664707 -117872552 + AT_rich Low_complexity Low_complexity 1 21 0 2 849 180 0 0 0 chr5 34664774 34664794 -117872465 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 849 864 147 0 7 chr5 34664794 34664931 -117872328 - B1_Mur4 SINE Alu -13 137 2 2 849 281 283 85 62 chr5 34665037 34665214 -117872045 + ID_B1 SINE B4 41 221 -3 2 849 507 333 39 17 chr5 34666324 34666556 -117870703 - RMER15 LTR ERVL -43 532 296 2 849 1041 271 57 47 chr5 34666560 34666943 -117870316 - RMER15 LTR ERVL 0 575 189 2 849 180 0 0 0 chr5 34667061 34667081 -117870178 + (CCA)n Simple_repeat Simple_repeat 2 21 0 2 849 708 202 202 27 chr5 34668270 34668453 -117868806 - B3 SINE B2 -1 215 1 2 849 1243 54 0 0 chr5 34671467 34671614 -117865645 - B1_Mus1 SINE Alu 0 148 2 2 849 291 301 80 0 chr5 34671763 34671876 -117865383 + B1F SINE Alu 2 123 -26 2 849 937 147 7 0 chr5 34671904 34672047 -117865212 + B1_Mus1 SINE Alu 5 148 0 2 849 411 183 18 46 chr5 34672078 34672187 -117865072 + B1_Mur3 SINE Alu 42 147 -2 2 849 380 279 105 30 chr5 34672183 34672316 -117864943 + RSINE1 SINE B4 5 147 -18 2 849 371 268 93 16 chr5 34672358 34672540 -117864719 + MLT1H LTR MaLR 91 286 -263 2 849 2141 136 72 0 chr5 34672718 34673078 -117864181 - ORR1B1 LTR MaLR -8 386 1 2 849 459 187 24 24 chr5 34673229 34673269 -117863990 - RMER10B LTR ERVL -117 281 239 2 849 3512 45 31 5 chr5 34673269 34673694 -117863565 - RLTR10C LTR ERVK 0 436 1 2 849 520 95 203 14 chr5 34673694 34673879 -117863380 - RMER10B LTR ERVL -160 238 1 2 849 1142 257 74 77 chr5 34673981 34674252 -117863007 - RMER17C-int LTR ERVK -141 3097 2818 2 849 1552 58 16 0 chr5 34674252 34674443 -117862816 - B2_Mm2 SINE B2 -1 194 1 2 849 1142 257 74 77 chr5 34674443 34674668 -117862591 - RMER17C-int LTR ERVK -421 2817 2602 2 849 245 353 59 0 chr5 34674882 34674967 -117862292 + RSINE1 SINE B4 70 159 -6 2 849 519 177 62 0 chr5 34674978 34675074 -117862185 + B1_Mm SINE Alu 1 102 -45 2 849 324 310 105 9 chr5 34675074 34675085 -117862174 + B4 SINE B4 119 203 -89 3 849 1331 57 68 0 chr5 34675144 34675320 -117861939 + B2_Mm2 SINE B2 2 189 -6 3 849 227 242 65 0 chr5 34675327 34675389 -117861870 - MurSatRep1 Unknown Unknown -1879 258 193 3 849 594 182 127 0 chr5 34675442 34675568 -117861691 + B1_Mus2 SINE Alu 5 146 -1 3 849 21 0 0 0 chr5 34675584 34675605 -117861654 + AT_rich Low_complexity Low_complexity 1 21 0 3 849 231 114 0 0 chr5 34675640 34675675 -117861584 + (T)n Simple_repeat Simple_repeat 1 35 0 3 849 1164 75 0 7 chr5 34675675 34675823 -117861436 - B1_Mus2 SINE Alu 0 147 1 3 849 2241 139 24 75 chr5 34675997 34676307 -117860952 + RLTR28B LTR ERVL 1 305 -176 3 849 1352 86 5 11 chr5 34676307 34676495 -117860764 + B2_Mm2 SINE B2 2 188 -7 3 849 1261 58 58 0 chr5 34676504 34676677 -117860582 + B2_Mm1a SINE B2 1 183 -10 3 849 2241 139 24 75 chr5 34676677 34676808 -117860451 + RLTR28B LTR ERVL 306 429 -52 3 849 228 174 87 0 chr5 34677019 34677065 -117860194 + B3A SINE B2 83 132 -66 3 849 1059 36 36 14 chr5 34677355 34677495 -117859764 - B1_Mm SINE Alu -1 146 4 3 849 633 164 47 67 chr5 34677500 34677650 -117859609 - B1_Mus1 SINE Alu 0 148 2 3 849 436 313 9 0 chr5 34680239 34680354 -117856905 + ID_B1 SINE B4 102 217 -7 3 849 341 293 0 12 chr5 34680466 34680549 -117856710 - ID4_ SINE ID 0 83 2 3 849 219 307 13 13 chr5 34680578 34680654 -117856605 - RSINE1 SINE B4 -2 163 88 3 849 355 210 0 187 chr5 34680742 34680865 -117856394 - B1F SINE Alu 0 149 18 3 849 290 288 133 9 chr5 34680989 34681094 -117856165 + B1F SINE Alu 1 118 -31 3 849 941 58 7 28 chr5 34681320 34681461 -117855798 - B1_Mm SINE Alu 0 147 10 3 849 359 247 171 67 chr5 34681363 34681496 -117855763 - MT2A LTR ERVL -337 264 139 3 849 935 96 22 7 chr5 34681496 34681633 -117855626 + B1_Mus1 SINE Alu 5 143 -5 3 849 424 206 57 15 chr5 34681633 34681738 -117855521 - MT2A LTR ERVL -463 138 1 3 849 520 229 34 8 chr5 34681843 34681962 -117855297 - B1_Mur1 SINE Alu -5 144 23 3 849 1081 49 7 40 chr5 34682906 34683056 -117854203 - B1_Mus2 SINE Alu -1 146 2 3 849 246 202 337 0 chr5 34683421 34683510 -117853749 + PB1D9 SINE Alu 2 120 0 3 849 205 19 17 103 chr5 34685061 34685119 -117852140 + (TTTTTG)n Simple_repeat Simple_repeat 1 53 0 3 849 415 179 12 12 chr5 34685720 34685805 -117851454 + B4A SINE B4 2 86 -206 3 849 1648 26 5 0 chr5 34685815 34686006 -117851253 + B2_Mm1t SINE B2 2 193 0 3 849 1269 93 33 5 chr5 34686221 34686405 -117850854 - B2_Mm1t SINE B2 -3 190 2 3 849 328 253 145 0 chr5 34686406 34686489 -117850770 + B3 SINE B2 84 178 -38 3 849 390 230 0 0 chr5 34686601 34686675 -117850584 + RSINE1 SINE B4 60 133 -32 3 849 552 165 172 8 chr5 34686740 34686868 -117850391 + B1_Mur4 SINE Alu 2 150 0 3 849 713 234 115 21 chr5 34686887 34687079 -117850180 + B3 SINE B2 1 210 -6 3 849 300 223 140 68 chr5 34687176 34687397 -117849862 - RCHARR1 DNA MER1_type -8 966 730 3 849 474 296 40 0 chr5 34687406 34687531 -117849728 + RSINE1 SINE B4 34 163 -2 3 849 370 225 30 90 chr5 34687591 34687757 -117849502 + RLTR15 LTR ERVK 33 188 -171 3 849 260 316 57 25 chr5 34687790 34687949 -117849310 + RLTR15 LTR ERVK 186 349 -10 3 849 981 90 7 0 chr5 34687974 34688118 -117849141 - B1_Mus2 SINE Alu -1 146 2 3 849 1046 291 64 55 chr5 34688196 34688683 -117848576 - RCHARR1 DNA MER1_type -471 503 13 3 849 411 236 56 16 chr5 34688712 34688837 -117848422 - B1_Mur1 SINE Alu 0 149 20 3 849 307 109 0 0 chr5 34688888 34688934 -117848325 + B2_Mm2 SINE B2 103 148 -47 3 849 570 126 6 0 chr5 34688924 34689023 -117848236 - B2_Mm2 SINE B2 -112 104 1 3 849 1036 227 10 5 chr5 34689692 34689896 -117847363 - B3 SINE B2 -11 205 1 3 849 618 237 7 7 chr5 34690755 34690891 -117846368 - B1_Mur1 SINE Alu -13 136 1 3 849 922 127 6 57 chr5 34691492 34691668 -117845591 + B2_Mm2 SINE B2 1 167 -28 3 849 219 45 0 62 chr5 34691729 34691777 -117845482 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 3 849 1184 42 21 0 chr5 34691779 34691923 -117845336 - B1_Mus2 SINE Alu 0 147 1 3 849 1401 82 60 0 chr5 34693008 34693191 -117844068 + B2_Mm2 SINE B2 2 195 0 3 849 1029 206 1 12 chr5 34696331 34696536 -117840723 - B3 SINE B2 -7 209 7 3 849 1227 236 124 108 chr5 34696535 34697101 -117840158 - RMER4B LTR ERVK -10 575 1 3 849 247 339 49 16 chr5 34697101 34697224 -117840035 + B3A SINE B2 50 176 -22 3 849 438 300 48 30 chr5 34697227 34697392 -117839867 - B3 SINE B2 -2 214 47 3 849 315 330 71 9 chr5 34697446 34697559 -117839700 + RSINE1 SINE B4 8 127 -38 3 849 238 139 288 14 chr5 34697839 34697912 -117839347 + URR1B DNA MER1_type 133 225 0 3 849 295 199 3 7 chr5 34697912 34697976 -117839283 + B4 SINE B4 151 213 -79 3 849 496 175 184 0 chr5 34698052 34698166 -117839093 - B1_Mur4 SINE Alu -6 144 10 3 849 514 274 121 100 chr5 34698303 34698583 -117838676 - B4A SINE B4 0 292 7 3 849 21 0 0 0 chr5 34698665 34698686 -117838573 + AT_rich Low_complexity Low_complexity 1 21 0 3 849 1361 79 5 45 chr5 34698700 34698898 -117838361 + B2_Mm1a SINE B2 1 190 -3 3 849 480 147 284 0 chr5 34698905 34699021 -117838238 + B1_Mur3 SINE Alu 1 149 0 3 849 235 158 0 0 chr5 34699032 34699070 -117838189 + B1_Mm SINE Alu 108 145 -2 3 849 1047 118 56 6 chr5 34699084 34699263 -117837996 + B2_Mm2 SINE B2 7 194 -1 3 849 333 264 257 0 chr5 34699306 34699446 -117837813 + B3 SINE B2 11 186 -30 3 849 225 305 192 17 chr5 34699495 34699615 -117837644 + B1F1 SINE Alu 9 149 0 3 849 445 254 129 114 chr5 34699690 34699835 -117837424 + B4A SINE B4 1 127 -165 3 849 781 62 257 0 chr5 34699835 34699948 -117837311 + B1_Mus1 SINE Alu 2 143 -5 3 849 445 254 129 114 chr5 34699948 34700082 -117837177 + B4A SINE B4 128 284 -8 3 849 347 244 79 153 chr5 34700190 34700340 -117836919 - MTEb LTR MaLR -62 317 169 3 849 1020 84 35 0 chr5 34700340 34700483 -117836776 - B1_Mus1 SINE Alu 0 148 1 3 849 347 244 79 153 chr5 34700483 34700528 -117836731 - MTEb LTR MaLR -211 168 137 3 849 2048 169 70 143 chr5 34700528 34700886 -117836373 - RMER15 LTR ERVL -4 571 291 3 849 1382 82 27 5 chr5 34700886 34701071 -117836188 - B2_Mm2 SINE B2 -5 190 2 3 849 2048 169 70 143 chr5 34701071 34701328 -117835931 - RMER15 LTR ERVL -285 290 1 3 849 959 96 52 40 chr5 34701342 34701485 -117835774 - B2_Mm2 SINE B2 0 195 45 3 849 1208 168 33 0 chr5 34701485 34701699 -117835560 - URR1B DNA MER1_type -4 221 1 3 849 959 96 52 40 chr5 34701699 34701728 -117835531 - B2_Mm2 SINE B2 -151 44 21 3 849 2593 222 117 8 chr5 34701768 34702430 -117834829 - RMER15-int LTR ERVL -233 4766 4033 3 849 2176 261 31 55 chr5 34702416 34703068 -117834191 - RMER15-int LTR ERVL -2600 2399 1764 3 849 408 270 99 35 chr5 34703107 34703391 -117833868 - RLTR15 LTR ERVK -57 302 1 3 849 715 234 77 20 chr5 34703391 34703587 -117833672 - RMER15-int LTR ERVL -3229 1770 1564 3 849 2694 229 29 24 chr5 34703608 34704191 -117833068 - RMER15-int LTR ERVL -3507 1492 907 3 849 276 30 0 0 chr5 34704240 34704273 -117832986 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 849 696 232 65 0 chr5 34704317 34704455 -117832804 - RMER15-int LTR ERVL -4376 623 477 3 849 449 48 0 0 chr5 34704507 34704570 -117832689 - B1_Mus2 SINE Alu 0 147 85 3 849 1448 147 25 18 chr5 34704569 34704847 -117832412 + RMER15 LTR ERVL 296 575 0 3 849 1413 260 9 10 chr5 34704848 34705242 -117832017 + RMER15-int LTR ERVL 2 436 -4563 3 849 970 158 0 0 chr5 34705244 34705390 -117831869 + B1_Mus1 SINE Alu 2 147 -1 3 849 217 161 0 51 chr5 34705391 34705450 -117831809 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 3 849 2333 218 110 73 chr5 34705552 34706410 -117830849 + RMER19B LTR ERVK 2 890 -12 3 849 238 282 106 0 chr5 34706481 34706566 -117830693 + L1MB4 LINE L1 5683 5776 -398 3 849 274 284 0 0 chr5 34706577 34706644 -117830615 + PB1D9 SINE Alu 2 68 -52 3 849 782 151 81 38 chr5 34706755 34706941 -117830318 + B2_Mm2 SINE B2 1 194 -1 3 849 250 257 79 0 chr5 34706950 34707051 -117830208 + L1MB4 LINE L1 6017 6125 -55 3 849 1458 17 78 6 chr5 34707052 34707069 -117830190 - B2_Mm1a SINE B2 -1 192 176 3 849 207 0 0 0 chr5 34707069 34707092 -117830167 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3 849 1458 17 78 6 chr5 34707092 34707253 -117830006 - B2_Mm1a SINE B2 -18 175 2 3 849 316 158 0 50 chr5 34707286 34707346 -117829913 + B3 SINE B2 2 58 -158 3 849 343 276 48 75 chr5 34707411 34707638 -117829621 - RLTR15 LTR ERVK -89 270 50 3 849 1206 62 0 0 chr5 34707719 34707865 -117829394 + B1_Mus2 SINE Alu 2 147 0 3 849 204 156 22 0 chr5 34707871 34707916 -117829343 + A-rich Low_complexity Low_complexity 2 47 0 3 849 537 175 164 21 chr5 34707993 34708133 -117829126 + B3 SINE B2 53 212 -4 3 849 223 211 0 37 chr5 34708193 34708247 -117829012 + RSINE1 SINE B4 15 66 -99 3 849 1153 152 9 23 chr5 34708233 34708448 -117828811 + RMER19C LTR ERVK 400 611 0 3 849 236 192 0 0 chr5 34708482 34708534 -117828725 + T-rich Low_complexity Low_complexity 1 52 0 3 849 1628 31 10 10 chr5 34708592 34708785 -117828474 + B2_Mm1a SINE B2 1 193 0 3 849 652 209 77 13 chr5 34708800 34708955 -117828304 + B3 SINE B2 41 205 -11 3 849 579 200 27 9 chr5 34709094 34709205 -117828054 + B1_Mur4 SINE Alu 6 118 -32 3 849 1190 48 14 0 chr5 34709221 34709366 -117827893 - B1_Mus1 SINE Alu 0 148 2 3 849 360 352 0 0 chr5 34709399 34709507 -117827752 + PB1D10 SINE Alu 1 108 -9 3 849 1196 48 14 0 chr5 34710149 34710295 -117826964 - B1_Mus1 SINE Alu 0 148 1 3 849 665 183 44 30 chr5 34710320 34710455 -117826804 - B1_Mur4 SINE Alu 0 150 14 3 849 251 168 82 25 chr5 34710458 34710580 -117826679 + (TA)n Simple_repeat Simple_repeat 2 130 0 3 849 23 0 0 0 chr5 34710646 34710669 -117826590 + AT_rich Low_complexity Low_complexity 1 23 0 3 849 566 176 73 44 chr5 34710748 34710885 -117826374 + B1F2 SINE Alu 9 149 0 3 849 245 214 12 12 chr5 34710886 34710971 -117826288 + A-rich Low_complexity Low_complexity 1 85 0 3 849 246 310 53 23 chr5 34711072 34711204 -117826055 + MIRb SINE MIR 53 188 -80 4 849 30 59 0 0 chr5 34712483 34712534 -117824725 + GC_rich Low_complexity Low_complexity 1 51 0 4 849 46 16 0 16 chr5 34712715 34712752 -117824507 + GC_rich Low_complexity Low_complexity 1 37 0 4 849 208 53 0 50 chr5 34712752 34712792 -117824467 + (CCG)n Simple_repeat Simple_repeat 2 39 0 4 849 46 16 0 16 chr5 34712792 34712818 -117824441 + GC_rich Low_complexity Low_complexity 1 26 0 4 849 220 159 41 66 chr5 34712901 34713022 -117824237 + (CGCGG)n Simple_repeat Simple_repeat 4 121 0 4 849 233 213 16 0 chr5 34712903 34712964 -117824295 + (CGG)n Simple_repeat Simple_repeat 3 64 0 4 849 30 69 0 0 chr5 34713091 34713149 -117824110 + GC_rich Low_complexity Low_complexity 1 58 0 4 849 696 193 27 20 chr5 34714596 34714744 -117822515 - B1_Mur2 SINE Alu 0 149 1 4 849 1247 34 0 13 chr5 34716116 34716265 -117820994 + B1_Mus2 SINE Alu 1 147 0 4 849 1304 98 5 16 chr5 34717064 34717250 -117820009 + B2_Mm1a SINE B2 1 184 -9 4 849 414 309 8 16 chr5 34717270 34717398 -117819861 - PB1 SINE Alu 0 127 1 4 849 708 197 15 8 chr5 34717627 34717760 -117819499 - B1_Mur2 SINE Alu -15 134 1 4 849 1070 37 0 43 chr5 34717854 34717995 -117819264 - B1_Mus2 SINE Alu -12 135 1 4 849 327 202 60 30 chr5 34718097 34718239 -117819020 - B3 SINE B2 0 216 2 4 849 21 0 0 0 chr5 34718265 34718286 -117818973 + AT_rich Low_complexity Low_complexity 1 21 0 4 849 242 249 103 38 chr5 34718310 34718516 -117818743 - L1M5 LINE L1 -1439 4707 4484 4 849 315 0 0 0 chr5 34718520 34718555 -117818704 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 4 849 1058 85 7 0 chr5 34718555 34718708 -117818551 - B2_Mm1t SINE B2 -33 160 7 4 849 471 191 0 0 chr5 34719061 34719145 -117818114 - B1_Mus2 SINE Alu -19 128 45 4 849 255 243 0 63 chr5 34719086 34719165 -117818094 - RLTR25B LTR ERVK -526 502 429 4 849 530 225 22 37 chr5 34719189 34719323 -117817936 - B1_Mur4 SINE Alu -18 132 1 4 849 648 263 118 57 chr5 34719327 34719853 -117817406 - L1M5 LINE L1 -1998 4148 3594 4 849 660 187 179 12 chr5 34719867 34720040 -117817219 + MTD LTR MaLR 1 202 -217 4 849 1181 89 0 32 chr5 34720137 34720323 -117816936 - B2_Mm2 SINE B2 -1 194 15 4 849 1010 73 81 0 chr5 34720357 34720493 -117816766 - B1_Mus1 SINE Alu 0 148 2 4 849 276 91 0 0 chr5 34720669 34720713 -117816546 + (T)n Simple_repeat Simple_repeat 1 44 0 4 849 1172 68 0 0 chr5 34720713 34720860 -117816399 - B1_Mus2 SINE Alu 0 147 1 4 849 251 324 107 99 chr5 34720974 34721095 -117816164 - Tigger5 DNA MER2_type -2160 246 118 4 849 318 26 0 0 chr5 34721095 34721134 -117816125 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 849 251 324 107 99 chr5 34721134 34721255 -117816004 - Tigger5 DNA MER2_type -2289 117 2 4 849 300 27 0 0 chr5 34721434 34721471 -117815788 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 849 877 204 118 0 chr5 34721524 34721710 -117815549 - B3 SINE B2 -7 209 2 4 849 322 287 59 25 chr5 34721806 34721924 -117815335 - RSINE1 SINE B4 -40 125 4 4 849 572 246 0 0 chr5 34722083 34722209 -117815050 - B1F1 SINE Alu 0 149 24 4 849 350 314 80 37 chr5 34722209 34722245 -117815014 - ID_B1 SINE B4 0 224 56 4 849 511 248 48 0 chr5 34722289 34722394 -117814865 - B1_Mus2 SINE Alu -35 112 3 4 849 262 137 257 14 chr5 34722443 34722517 -117814742 - PB1D10 SINE Alu -3 114 23 4 849 225 297 149 33 chr5 34722855 34723078 -117814181 - B4A SINE B4 -6 286 2 4 849 21 0 0 0 chr5 34723199 34723220 -117814039 + AT_rich Low_complexity Low_complexity 1 21 0 4 849 554 300 43 0 chr5 34723227 34723367 -117813892 - RSINE1 SINE B4 -8 157 12 4 849 1176 67 0 0 chr5 34723366 34723516 -117813743 - B2_Mm2 SINE B2 -45 150 1 4 849 765 173 45 25 chr5 34723531 34723710 -117813549 - B3 SINE B2 0 195 9 4 849 385 235 52 113 chr5 34723749 34723864 -117813395 + PB1 SINE Alu 13 120 0 4 849 220 283 0 80 chr5 34723981 34724081 -117813178 - BC1_Mm scRNA scRNA -47 105 14 4 849 372 221 13 38 chr5 34724005 34724089 -117813170 - RSINE1 SINE B4 -205 87 7 4 849 236 345 48 79 chr5 34724118 34724244 -117813015 - RSINE1 SINE B4 0 165 44 4 849 578 261 24 77 chr5 34724218 34724388 -117812871 - ORR1D1 LTR MaLR -211 163 3 4 849 1987 158 88 30 chr5 34724460 34724858 -117812401 - MTC LTR MaLR 0 421 1 4 849 839 37 0 9 chr5 34725042 34725151 -117812108 - B1_Mus2 SINE Alu 0 147 40 4 849 831 204 25 59 chr5 34725158 34725170 -117812089 - B3 SINE B2 -4 212 201 4 849 222 37 0 0 chr5 34725170 34725197 -117812062 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4 849 831 204 25 59 chr5 34725197 34725361 -117811898 - B3 SINE B2 -16 200 47 4 849 1264 55 0 7 chr5 34725361 34725509 -117811750 - B1_Mus1 SINE Alu -1 147 1 4 849 831 204 25 59 chr5 34725509 34725534 -117811725 - B3 SINE B2 -170 46 17 4 849 329 253 41 128 chr5 34725554 34725726 -117811533 + Charlie7 DNA MER1_type 664 820 -1792 4 849 1325 104 35 0 chr5 34725838 34726011 -117811248 + B2_Mm1t SINE B2 1 179 -14 4 849 308 209 265 47 chr5 34726011 34726162 -117811097 + B2_Mm2 SINE B2 1 184 -11 4 849 386 235 82 57 chr5 34726306 34726464 -117810795 + Charlie7 DNA MER1_type 883 1044 -1568 4 849 772 267 213 28 chr5 34726778 34726989 -117810270 + Charlie7 DNA MER1_type 1615 1863 -749 4 849 192 40 0 0 chr5 34726989 34727014 -117810245 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 849 772 267 213 28 chr5 34727014 34727333 -117809926 + Charlie7 DNA MER1_type 1864 2242 -370 4 849 882 89 52 0 chr5 34727381 34727516 -117809743 - B2_Mm2 SINE B2 -7 188 47 4 849 523 291 52 13 chr5 34727561 34727714 -117809545 - RSINE1 SINE B4 -4 161 3 4 849 1317 262 44 179 chr5 34728190 34728935 -117808324 - RMER19C LTR ERVK -39 698 1 4 849 216 86 0 0 chr5 34728936 34728971 -117808288 + (T)n Simple_repeat Simple_repeat 1 35 0 4 849 596 167 83 9 chr5 34728972 34729081 -117808178 - PB1D9 SINE Alu -1 119 3 4 849 1461 94 16 0 chr5 34729136 34729327 -117807932 - B2_Mm2 SINE B2 0 195 2 4 849 426 39 0 0 chr5 34729350 34729402 -117807857 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 4 849 1203 89 0 0 chr5 34729403 34729561 -117807698 - B2_Mm2 SINE B2 -37 158 1 4 849 1357 109 16 0 chr5 34729768 34729951 -117807308 - B2_Mm1t SINE B2 -6 187 2 4 849 977 150 29 0 chr5 34729966 34730106 -117807153 - B1_Mus1 SINE Alu -2 146 3 4 849 382 317 14 21 chr5 34730381 34730523 -117806736 - ID_B1 SINE B4 -6 218 78 4 849 787 172 0 8 chr5 34730563 34730692 -117806567 + B1_Mus1 SINE Alu 21 148 0 4 849 498 228 73 73 chr5 34730707 34730830 -117806429 - B3A SINE B2 -30 168 46 4 849 676 301 53 44 chr5 34730840 34731180 -117806079 - RLTR15 LTR ERVK -16 343 1 4 849 1236 197 8 0 chr5 34731180 34731429 -117805830 - MYSERV-int LTR ERVK 0 6550 6300 4 849 742 158 109 26 chr5 34731432 34731588 -117805671 - B2_Mm2 SINE B2 -26 169 1 4 849 1701 21 21 0 chr5 34731629 34731817 -117805442 - B2_Mm1t SINE B2 0 193 2 4 849 2531 158 179 59 chr5 34731822 34732690 -117804569 - MYSERV6-int LTR ERVK -222 8737 7765 4 849 558 263 85 6 chr5 34732694 34732870 -117804389 - RMER4A LTR ERVK -27 439 250 4 849 844 271 19 125 chr5 34732874 34733028 -117804231 - MYSERV-int LTR ERVK -1422 5128 5000 4 849 1237 62 0 0 chr5 34733028 34733173 -117804086 - B1_Mm SINE Alu 0 147 3 4 849 860 261 58 67 chr5 34733173 34733540 -117803719 - MYSERV-int LTR ERVK -1573 753 395 4 849 547 183 98 8 chr5 34733543 34733675 -117803584 + RMER19B LTR ERVK 678 821 -81 4 849 354 45 0 0 chr5 34733675 34733719 -117803540 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 4 849 195 42 0 0 chr5 34733721 34733745 -117803514 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 4 849 1075 68 8 0 chr5 34733746 34733879 -117803380 - B1_Mus1 SINE Alu -13 135 2 4 849 195 69 0 0 chr5 34733898 34733927 -117803332 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 4 849 1047 75 88 0 chr5 34733927 34734074 -117803185 - B2_Mm2 SINE B2 -34 161 2 4 106 721 195 115 78 chr5 34734074 34734203 -117803056 + RMER19B LTR ERVK 766 902 0 4 850 435 111 48 0 chr5 34734203 34734266 -117802993 - MYSERV6-int LTR ERVK -7567 1392 1327 4 850 408 309 0 10 chr5 34734350 34734465 -117802794 - B1_Mur2 SINE Alu -35 114 1 4 850 399 255 42 21 chr5 34734501 34734597 -117802662 - PB1D10 SINE Alu -6 111 14 4 850 266 191 0 41 chr5 34734554 34734603 -117802656 - B4A SINE B4 -151 141 95 4 850 501 241 69 83 chr5 34735269 34735414 -117801845 + B4A SINE B4 131 273 -19 4 850 1959 193 38 108 chr5 34735456 34735645 -117801614 + RLTR31_Mm LTR ERVK 1 175 -386 4 850 1241 62 7 0 chr5 34735645 34735790 -117801469 - B1_Mm SINE Alu 0 147 2 4 850 1959 193 38 108 chr5 34735790 34736203 -117801056 + RLTR31_Mm LTR ERVK 176 561 0 4 850 702 139 52 71 chr5 34736211 34736366 -117800893 + URR1A DNA MER1_type 75 226 0 4 850 221 301 71 12 chr5 34736368 34736452 -117800807 - PB1D7 SINE Alu -26 94 6 4 850 434 148 37 73 chr5 34736860 34736969 -117800290 + B1_Mus2 SINE Alu 30 134 -13 4 850 180 0 0 0 chr5 34736969 34736989 -117800270 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 850 432 155 31 108 chr5 34736989 34737009 -117800250 + B1_Mur3 SINE Alu 137 149 0 4 850 1311 106 39 0 chr5 34737071 34737250 -117800009 - B2_Mm1t SINE B2 -6 187 2 4 850 2277 102 45 3 chr5 34737277 34737591 -117799668 + ORR1A2 LTR MaLR 1 327 0 4 850 362 218 33 138 chr5 34737591 34737772 -117799487 + ID_B1 SINE B4 8 169 -55 4 850 428 263 24 45 chr5 34737778 34737942 -117799317 - B4A SINE B4 -63 161 5 4 850 940 240 39 5 chr5 34737952 34738157 -117799102 - B3 SINE B2 -3 213 2 4 850 218 301 44 97 chr5 34738635 34738749 -117798510 - MIR3 SINE MIR -93 115 8 4 850 525 32 0 0 chr5 34739351 34739414 -117797845 + (TCTCCC)n Simple_repeat Simple_repeat 1 63 0 4 850 624 91 0 0 chr5 34739414 34739502 -117797757 + (TTTC)n Simple_repeat Simple_repeat 1 88 0 5 850 186 43 0 0 chr5 34739625 34739648 -117797611 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 850 1035 104 0 0 chr5 34739649 34739784 -117797475 - B1_Mus1 SINE Alu -12 136 2 5 850 603 167 56 0 chr5 34739814 34739922 -117797337 - B1_Mus1 SINE Alu -34 114 1 5 850 1232 42 7 14 chr5 34739952 34740098 -117797161 + B1_Mus2 SINE Alu 1 145 -2 5 850 327 292 195 82 chr5 34740104 34740335 -117796924 - LTR41B LTR ERVL -151 607 351 5 850 242 277 48 12 chr5 34740663 34740747 -117796512 - LTR41B LTR ERVL -558 210 124 5 850 602 241 21 7 chr5 34740831 34740973 -117796286 - B1_Mus2 SINE Alu -1 146 3 5 850 204 171 42 28 chr5 34741448 34741520 -117795739 + CT-rich Low_complexity Low_complexity 4 76 0 5 850 320 296 0 27 chr5 34741544 34741617 -117795642 - PB1 SINE Alu -39 88 18 5 850 212 232 13 127 chr5 34741647 34741726 -117795533 + B1F1 SINE Alu 2 71 -78 5 850 1114 104 0 0 chr5 34741861 34742005 -117795254 - B1_Mus2 SINE Alu 0 147 4 5 850 872 281 28 28 chr5 34742028 34742242 -117795017 + B4A SINE B4 1 214 -78 5 850 560 263 49 35 chr5 34742242 34742384 -117794875 + RSINE1 SINE B4 1 144 -21 5 850 633 199 70 42 chr5 34742708 34742850 -117794409 - B1_Mur3 SINE Alu -1 148 3 5 850 807 154 27 34 chr5 34742923 34743071 -117794188 + B1_Mm SINE Alu 1 147 0 5 850 314 236 117 11 chr5 34743074 34743168 -117794091 - ERVL-int LTR ERVL -1350 4407 4271 5 850 756 159 174 18 chr5 34743232 34743251 -117794008 - B2_Mm1t SINE B2 0 193 168 5 850 4728 67 60 13 chr5 34743251 34743329 -117793930 - L1Md_F2 LINE L1 -1 6581 6505 5 850 207 69 0 0 chr5 34743329 34743358 -117793901 + (CCCA)n Simple_repeat Simple_repeat 1 29 0 5 850 4728 67 60 13 chr5 34743358 34743900 -117793359 - L1Md_F2 LINE L1 -78 6504 5934 5 850 1006 82 122 0 chr5 34743900 34744047 -117793212 - B2_Mm2 SINE B2 -30 165 1 5 850 21 0 0 0 chr5 34744497 34744518 -117792741 + AT_rich Low_complexity Low_complexity 1 21 0 5 850 966 236 68 5 chr5 34744519 34744711 -117792548 - B3 SINE B2 -11 205 2 5 850 549 319 25 54 chr5 34744883 34745130 -117792129 - L1MC1 LINE L1 -403 5930 5692 5 850 402 21 0 0 chr5 34745130 34745177 -117792082 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 850 291 28 0 0 chr5 34745177 34745212 -117792047 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 850 549 319 25 54 chr5 34745212 34745368 -117791891 - L1MC1 LINE L1 -642 5691 5539 5 850 243 0 0 0 chr5 34745379 34745406 -117791853 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 850 390 236 240 13 chr5 34745530 34745680 -117791579 + B3A SINE B2 1 184 -14 5 850 29 70 0 0 chr5 34745682 34745739 -117791520 + AT_rich Low_complexity Low_complexity 1 57 0 5 850 4213 38 6 0 chr5 34746153 34746625 -117790634 - MT2C_Mm LTR ERVL 0 475 1 5 850 339 265 132 0 chr5 34747052 34747135 -117790124 + PB1 SINE Alu 27 120 -7 5 850 368 155 247 9 chr5 34747135 34747229 -117790030 + B1_Mur2 SINE Alu 11 127 -22 5 850 302 346 33 119 chr5 34747271 34747348 -117789911 + ID SINE ID 24 87 -137 5 850 267 321 44 35 chr5 34747348 34747461 -117789798 + PB1D10 SINE Alu 2 115 -2 5 850 270 95 0 0 chr5 34747777 34747819 -117789440 + (CAGG)n Simple_repeat Simple_repeat 1 42 0 5 850 211 293 102 17 chr5 34748186 34748245 -117789014 + RSINE1 SINE B4 84 147 -18 5 850 1941 207 92 24 chr5 34748706 34749207 -117788052 - RMER19C LTR ERVK 0 611 77 5 850 283 248 90 9 chr5 34749228 34749352 -117787907 + L1MC LINE L1 2788 2919 -3227 5 850 625 244 0 32 chr5 34749352 34749475 -117787784 + PB1D9 SINE Alu 2 120 0 5 850 283 274 84 91 chr5 34749475 34749652 -117787607 + L1MC LINE L1 2909 3087 -3059 5 850 279 286 14 14 chr5 34749664 34749735 -117787524 - B4A SINE B4 -220 72 2 5 850 537 246 9 9 chr5 34750299 34750414 -117786845 + PB1 SINE Alu 11 125 -2 5 850 1184 70 0 14 chr5 34750415 34750559 -117786700 + B1_Mus1 SINE Alu 3 144 -4 5 850 189 0 0 0 chr5 34750996 34751017 -117786242 + (T)n Simple_repeat Simple_repeat 1 21 0 5 850 228 210 184 69 chr5 34751017 34751104 -117786155 - PB1D10 SINE Alu 0 117 21 5 850 28 0 0 0 chr5 34751447 34751475 -117785784 + AT_rich Low_complexity Low_complexity 1 28 0 5 850 209 83 28 0 chr5 34753133 34753169 -117784090 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 850 282 299 56 35 chr5 34753704 34753846 -117783413 - MLT1J-int LTR MaLR -623 764 620 5 850 421 304 67 76 chr5 34754635 34754963 -117782296 - Lx8 LINE L1 -1 7472 7148 5 850 1147 331 11 49 chr5 34755518 34755966 -117781293 - MT2A LTR ERVL -102 431 1 5 850 772 175 0 0 chr5 34756087 34756207 -117781052 - B1_Mus1 SINE Alu -13 135 16 5 850 3705 23 2 0 chr5 34756245 34756640 -117780619 - MTA_Mm LTR MaLR 0 396 1 5 850 564 305 85 0 chr5 34756658 34756799 -117780460 - RSINE1 SINE B4 -4 161 9 5 850 244 322 11 54 chr5 34756717 34756809 -117780450 - B2_Mm1t SINE B2 -103 90 3 5 850 605 281 0 7 chr5 34757436 34757576 -117779683 + B1_Mur1 SINE Alu 5 143 -6 5 850 278 50 0 24 chr5 34757576 34757617 -117779642 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 5 850 23 33 0 0 chr5 34757868 34757898 -117779361 + AT_rich Low_complexity Low_complexity 1 30 0 5 850 706 260 20 0 chr5 34758417 34758563 -117778696 + B1_Mur1 SINE Alu 1 149 0 5 850 709 206 20 47 chr5 34758624 34758772 -117778487 - B1_Mur2 SINE Alu -3 146 3 5 850 239 325 65 0 chr5 34759017 34759094 -117778165 - MIR SINE MIR -171 91 10 5 850 300 273 0 0 chr5 34759430 34759496 -117777763 - B4A SINE B4 -15 277 212 5 850 685 271 64 59 chr5 34759566 34759606 -117777653 - B4A SINE B4 -81 211 172 5 850 243 0 0 0 chr5 34759606 34759633 -117777626 + (ATTG)n Simple_repeat Simple_repeat 3 29 0 5 850 685 271 64 59 chr5 34759633 34759796 -117777463 - B4A SINE B4 -121 171 9 5 850 237 65 0 0 chr5 34759836 34759867 -117777392 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 850 21 0 0 0 chr5 34759957 34759978 -117777281 + AT_rich Low_complexity Low_complexity 1 21 0 5 850 491 219 180 0 chr5 34760158 34760286 -117776973 - ORR1D1 LTR MaLR -82 292 142 5 850 543 223 36 0 chr5 34760429 34760541 -117776718 - MTEa-int LTR MaLR -1449 131 16 5 850 403 307 35 1 chr5 34760544 34760666 -117776593 - MTEa LTR MaLR -22 357 210 5 850 218 217 229 0 chr5 34760971 34761054 -117776205 - L2 LINE L2 -620 2799 2698 5 850 369 62 0 0 chr5 34762089 34762137 -117775122 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 5 850 414 0 0 0 chr5 34762404 34762450 -117774809 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 5 850 672 203 0 25 chr5 34762450 34762571 -117774688 - B1_Mur2 SINE Alu -13 136 19 5 850 315 307 11 0 chr5 34763073 34763161 -117774098 + PB1D10 SINE Alu 24 112 -5 5 850 658 34 0 22 chr5 34763771 34763862 -117773397 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 5 850 340 173 86 40 chr5 34763862 34763967 -117773292 - B1_Mur4 SINE Alu -4 146 1 5 850 783 77 248 0 chr5 34764615 34764732 -117772527 - B1_Mus1 SINE Alu 0 148 3 5 850 599 199 229 24 chr5 34764862 34765032 -117772227 + B3 SINE B2 2 206 -10 5 850 848 72 153 46 chr5 34765222 34765353 -117771906 - B1_Mus1 SINE Alu -1 147 3 5 850 1242 196 102 64 chr5 34765480 34765763 -117771496 + RLTR11A LTR ERVK 1 294 -234 5 850 1004 61 0 0 chr5 34765759 34765890 -117771369 + B1_Mm SINE Alu 17 147 0 5 850 343 304 355 5 chr5 34765904 34766087 -117771172 + RLTR11A LTR ERVK 282 528 0 5 850 818 219 6 6 chr5 34766087 34766241 -117771018 + RLTR11A LTR ERVK 375 528 0 5 850 585 326 35 6 chr5 34766280 34766453 -117770806 - B4A SINE B4 -113 179 2 5 850 389 239 16 110 chr5 34766546 34766673 -117770586 + PB1D10 SINE Alu 2 116 -1 5 850 323 231 31 0 chr5 34766673 34766738 -117770521 + ID4 SINE ID 3 69 -14 5 850 1715 27 0 16 chr5 34766985 34767176 -117770083 - B2_Mm1a SINE B2 -4 189 2 5 850 630 274 67 43 chr5 34767223 34767433 -117769826 + B3 SINE B2 1 215 -1 5 850 218 32 0 31 chr5 34767444 34767476 -117769783 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 850 460 253 0 0 chr5 34767476 34767563 -117769696 - B1F2 SINE Alu -10 139 53 5 850 400 192 20 0 chr5 34767606 34767705 -117769554 + CT-rich Low_complexity Low_complexity 2 102 0 5 850 1090 189 50 41 chr5 34767915 34768136 -117769123 - URR1B DNA MER1_type -2 223 1 5 850 300 275 0 0 chr5 34770369 34770438 -117766821 + ID4_ SINE ID 15 83 0 5 850 21 0 0 0 chr5 34770704 34770725 -117766534 + AT_rich Low_complexity Low_complexity 1 21 0 5 850 555 251 126 37 chr5 34770830 34770997 -117766262 - L1MA5A LINE L1 -1699 5945 5747 5 850 435 19 0 0 chr5 34770997 34771049 -117766210 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 850 555 240 122 38 chr5 34771049 34771151 -117766108 - L1MA5A LINE L1 -518 5779 5680 5 850 1327 91 0 49 chr5 34771172 34771357 -117765902 - B2_Mm2 SINE B2 -18 177 2 5 850 1360 99 16 16 chr5 34771599 34771793 -117765466 + B2_Mm2 SINE B2 1 194 -1 5 850 1054 203 14 45 chr5 34772186 34772408 -117764851 - B3 SINE B2 0 216 2 5 850 342 0 0 0 chr5 34772420 34772458 -117764801 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 850 275 271 39 45 chr5 34772711 34772820 -117764439 + B1F2 SINE Alu 16 115 -2 5 850 301 368 63 8 chr5 34773344 34773470 -117763789 - RSINE1 SINE B4 -29 136 4 5 850 1016 229 24 5 chr5 34774080 34774286 -117762973 - B3 SINE B2 -6 210 1 5 850 599 319 6 58 chr5 34775093 34775266 -117761993 + RSINE1 SINE B4 1 164 -1 5 850 306 111 364 0 chr5 34775371 34775478 -117761781 - B2_Mm2 SINE B2 -3 192 47 5 850 1259 102 28 6 chr5 34775491 34775668 -117761591 - B2_Mm2 SINE B2 -14 181 1 5 850 589 244 0 9 chr5 34776226 34776342 -117760917 + PB1D9 SINE Alu 1 115 -5 6 850 260 192 0 78 chr5 34776490 34776549 -117760710 + B1_Mur2 SINE Alu 68 121 -26 6 850 359 311 41 32 chr5 34776554 34776677 -117760582 + B4A SINE B4 1 124 -168 6 850 306 115 0 0 chr5 34776788 34776840 -117760419 + (CAAA)n Simple_repeat Simple_repeat 4 55 0 6 850 257 250 113 19 chr5 34777324 34777430 -117759829 - L1MB2 LINE L1 -28 6143 6028 6 850 1532 215 103 18 chr5 34777745 34778086 -117759173 - ORR1D2 LTR MaLR 0 370 1 6 850 1169 92 18 0 chr5 34778544 34778708 -117758551 - B2_Mm2 SINE B2 -28 167 1 6 850 225 281 0 0 chr5 34780065 34780122 -117757137 - PB1D10 SINE Alu -35 82 26 6 850 1182 222 0 0 chr5 34780440 34780647 -117756612 + B3 SINE B2 3 209 -7 6 850 1391 50 71 11 chr5 34781700 34781883 -117755376 - B2_Mm2 SINE B2 0 195 2 6 850 180 0 0 0 chr5 34783337 34783357 -117753902 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 850 704 114 0 30 chr5 34783738 34783873 -117753386 + (TTCC)n Simple_repeat Simple_repeat 3 133 0 6 850 630 179 26 9 chr5 34783877 34783990 -117753269 - B1_Mur4 SINE Alu -1 149 35 6 850 324 321 0 0 chr5 34784287 34784368 -117752891 - ID4_ SINE ID -2 81 1 6 850 547 162 76 0 chr5 34785071 34785176 -117752083 + B1_Mur2 SINE Alu 36 148 -1 6 850 22 0 0 0 chr5 34785611 34785633 -117751626 + AT_rich Low_complexity Low_complexity 1 22 0 6 850 192 77 0 0 chr5 34786557 34786583 -117750676 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 6 850 260 247 99 22 chr5 34788205 34788296 -117748963 - B1F2 SINE Alu -41 108 11 6 850 5655 112 67 10 chr5 34788873 34789779 -117747480 - RMER17B LTR ERVK 0 958 1 6 850 694 216 94 40 chr5 34789945 34790147 -117747112 - B3 SINE B2 0 216 4 6 850 497 243 13 39 chr5 34790156 34790314 -117746945 - B3 SINE B2 -9 186 47 6 850 870 261 14 19 chr5 34790606 34790821 -117746438 - B3 SINE B2 0 216 3 6 850 592 247 148 42 chr5 34791748 34791792 -117745467 - L1MCa LINE L1 -3381 2940 2891 6 850 494 195 154 0 chr5 34791792 34791915 -117745344 + B1_Mur2 SINE Alu 2 143 -6 6 850 592 247 148 42 chr5 34791915 34792153 -117745106 - L1MCa LINE L1 -3431 2890 2628 6 850 205 239 30 0 chr5 34792159 34792226 -117745033 + T-rich Low_complexity Low_complexity 2 70 0 6 850 430 254 146 46 chr5 34792232 34792451 -117744808 - L1M3 LINE L1 -426 5745 5505 6 850 320 293 77 47 chr5 34792464 34792697 -117744562 - RLTR15 LTR ERVK -9 350 111 6 850 1178 189 174 0 chr5 34792717 34792992 -117744267 + ORR1C2 LTR MaLR 62 384 0 6 850 2672 46 6 0 chr5 34793005 34793328 -117743931 + L1Md_F2 LINE L1 5262 5586 -297 6 850 8008 55 9 4 chr5 34793328 34794319 -117742940 + L1Md_F2 LINE L1 5587 6582 0 6 850 229 217 33 0 chr5 34794488 34794548 -117742711 + L1M3 LINE L1 5435 5496 -675 6 850 605 278 39 19 chr5 34794549 34794806 -117742453 + RLTR15 LTR ERVK 1 262 -97 6 850 400 336 0 23 chr5 34794855 34794983 -117742276 + B3A SINE B2 26 150 -48 6 850 350 318 51 87 chr5 34795003 34795141 -117742118 - B3A SINE B2 -64 134 2 6 850 227 208 0 0 chr5 34795358 34795406 -117741853 + T-rich Low_complexity Low_complexity 1 48 0 6 850 416 338 14 7 chr5 34795453 34795593 -117741666 - RSINE1 SINE B4 -22 143 3 6 850 451 272 58 14 chr5 34795638 34795776 -117741483 + B3A SINE B2 3 146 -52 6 850 434 275 102 49 chr5 34796281 34796445 -117740814 - L1MCa LINE L1 -4689 1819 1645 6 850 757 179 20 7 chr5 34796445 34796591 -117740668 - B1_Mus1 SINE Alu 0 148 1 6 850 434 275 102 49 chr5 34796591 34796751 -117740508 - L1MCa LINE L1 -4864 1644 1478 6 850 316 226 0 0 chr5 34797514 34797576 -117739683 - L2b LINE L2 -9 3366 3305 6 850 373 253 0 0 chr5 34797656 34797735 -117739524 + ID4 SINE ID 5 83 0 6 850 388 268 76 21 chr5 34798475 34798620 -117738639 - MIR SINE MIR -89 173 21 6 850 351 0 0 0 chr5 34799134 34799173 -117738086 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6 850 827 179 7 7 chr5 34799182 34799328 -117737931 - B1_Mus2 SINE Alu 0 147 2 6 850 678 224 42 12 chr5 34801344 34801511 -117735748 + MIRb SINE MIR 81 252 -16 6 850 274 268 68 43 chr5 34802284 34802401 -117734858 + L1MC4 LINE L1 6897 7016 -1026 6 850 491 237 193 40 chr5 34802556 34802758 -117734501 - MTE2a LTR MaLR -7 372 140 6 850 370 235 23 23 chr5 34802858 34802945 -117734314 - PB1D7 SINE Alu -11 109 23 6 850 586 193 88 4 chr5 34804999 34805167 -117732092 - B3 SINE B2 0 198 10 6 850 808 152 256 6 chr5 34805211 34805383 -117731876 - B3 SINE B2 0 216 2 6 850 223 265 229 0 chr5 34805627 34805710 -117731549 - B1F SINE Alu -37 112 11 6 850 323 301 0 0 chr5 34806146 34806219 -117731040 + BC1_Mm scRNA scRNA 4 76 -76 6 850 441 279 64 24 chr5 34808040 34808165 -117729094 - RSINE1 SINE B4 -35 130 1 6 850 183 218 0 0 chr5 34808280 34808335 -117728924 + GA-rich Low_complexity Low_complexity 3 57 0 6 850 1186 203 0 20 chr5 34809637 34809883 -117727376 - MTD LTR MaLR -176 243 3 6 850 279 0 0 0 chr5 34809897 34809928 -117727331 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 850 274 232 29 14 chr5 34810641 34810711 -117726548 - ID4_ SINE ID -4 79 9 6 850 35 41 0 0 chr5 34810743 34810792 -117726467 + AT_rich Low_complexity Low_complexity 1 49 0 6 850 249 27 0 51 chr5 34810825 34810864 -117726395 + B2_Mm2 SINE B2 2 38 -157 6 850 1745 135 82 28 chr5 34810864 34811253 -117726006 + RMER17C LTR ERVK 1 410 0 6 850 1653 151 30 68 chr5 34811262 34811661 -117725598 - RMER17C LTR ERVK -26 384 1 6 850 1052 59 33 0 chr5 34811661 34811813 -117725446 + B2_Mm2 SINE B2 38 194 -1 6 850 415 230 0 66 chr5 34812053 34812174 -117725085 - PB1D10 SINE Alu 0 117 5 6 850 662 219 105 12 chr5 34812068 34812239 -117725020 - ID_B1 SINE B4 -35 189 3 6 850 750 169 80 14 chr5 34812292 34812430 -117724829 - B1_Mus1 SINE Alu -1 147 1 6 850 634 274 112 7 chr5 34812436 34812836 -117724423 - L1M2 LINE L1 -2452 3691 3253 6 850 246 196 22 0 chr5 34812891 34812937 -117724322 - PB1D9 SINE Alu -72 48 2 6 850 1056 194 38 28 chr5 34812937 34813149 -117724110 - B3 SINE B2 0 216 3 6 850 294 29 0 0 chr5 34813158 34813193 -117724066 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 850 738 204 22 0 chr5 34813219 34813356 -117723903 - B1_Mur2 SINE Alu -7 142 3 6 850 325 290 176 16 chr5 34813524 34813769 -117723490 - L1MC4 LINE L1 -2190 4024 3741 6 850 186 43 0 0 chr5 34814243 34814266 -117722993 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 850 410 224 112 0 chr5 34814392 34814499 -117722760 + PB1D9 SINE Alu 2 120 0 6 850 221 232 17 51 chr5 34815470 34815529 -117721730 - PB1 SINE Alu -62 65 9 6 850 305 239 77 77 chr5 34815601 34815782 -117721477 - L1MC4 LINE L1 -3963 2252 2072 6 850 298 234 141 54 chr5 34815794 34815943 -117721316 - MLT1A1 LTR MaLR 0 408 247 6 850 267 31 0 0 chr5 34816023 34816055 -117721204 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 850 419 258 117 53 chr5 34816059 34816073 -117721186 - B3 SINE B2 -16 200 190 6 850 243 0 0 0 chr5 34816073 34816100 -117721159 + (GA)n Simple_repeat Simple_repeat 1 27 0 6 850 419 258 117 53 chr5 34816100 34816117 -117721142 - B3 SINE B2 -27 189 173 6 850 336 24 0 0 chr5 34816117 34816158 -117721101 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 850 450 258 117 53 chr5 34816158 34816313 -117720946 - B3A SINE B2 -44 172 1 6 850 918 261 0 9 chr5 34816889 34817113 -117720146 - ID_B1 SINE B4 0 224 3 6 850 373 344 15 30 chr5 34818799 34818934 -117718325 + B3A SINE B2 50 182 -16 6 850 549 256 31 0 chr5 34819208 34819337 -117717922 + B1F SINE Alu 4 136 -13 6 850 1275 154 21 52 chr5 34819401 34819480 -117717779 - URR1A DNA MER1_type 0 226 148 6 850 1507 65 5 0 chr5 34819480 34819666 -117717593 - B2_Mm1a SINE B2 -6 187 1 6 850 1275 154 21 52 chr5 34819666 34819819 -117717440 - URR1A DNA MER1_type -79 147 1 6 850 306 259 0 36 chr5 34820019 34820103 -117717156 + B1F2 SINE Alu 2 82 -67 6 850 1639 214 182 43 chr5 34820215 34820683 -117716576 + MT2A LTR ERVL 1 533 0 6 850 226 186 169 14 chr5 34821005 34821076 -117716183 + ID2 SINE ID 2 83 0 6 850 647 299 0 24 chr5 34821224 34821392 -117715867 + RSINE1 SINE B4 2 165 0 6 850 847 230 35 15 chr5 34821443 34821646 -117715613 + B3 SINE B2 1 207 -9 6 850 1747 197 164 15 chr5 34821767 34822225 -117715034 - MT2A LTR ERVL -7 526 1 6 850 527 260 158 20 chr5 34822712 34822908 -117714351 + ID_B1 SINE B4 1 223 -1 6 850 1169 75 7 0 chr5 34822912 34823059 -117714200 + B1_Mus1 SINE Alu 1 148 0 6 850 952 155 42 21 chr5 34823656 34823847 -117713412 + B2_Mm2 SINE B2 1 195 0 6 850 272 300 14 0 chr5 34825272 34825342 -117711917 + PB1 SINE Alu 3 73 -54 6 850 1157 58 0 0 chr5 34825801 34825939 -117711320 - B1_Mus2 SINE Alu -9 138 1 6 850 262 170 0 0 chr5 34826384 34826431 -117710828 + B3A SINE B2 1 47 -151 6 850 342 0 0 0 chr5 34826437 34826475 -117710784 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 850 412 299 111 8 chr5 34826477 34826629 -117710630 - B3A SINE B2 -48 168 1 6 850 419 82 27 0 chr5 34826956 34827061 -117710198 - B2_Mm2 SINE B2 -5 190 47 6 850 1104 115 0 0 chr5 34827125 34827290 -117709969 - B2_Mm2 SINE B2 -30 165 1 6 850 1343 152 157 84 chr5 34830729 34831074 -117706185 - ORR1D1 LTR MaLR 0 374 5 6 850 204 40 0 0 chr5 34831401 34831426 -117705833 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 850 586 146 10 0 chr5 34832387 34832490 -117704769 - B1_Mur3 SINE Alu 0 149 46 6 850 392 206 25 116 chr5 34832871 34832884 -117704375 + MT2B LTR ERVL 155 156 -445 7 850 675 207 43 0 chr5 34832884 34833000 -117704259 + B1_Mur2 SINE Alu 2 122 -27 7 850 242 239 0 0 chr5 34833205 34833251 -117704008 + B1_Mur4 SINE Alu 5 50 -100 7 850 1661 262 264 8 chr5 34833492 34833519 -117703740 - L1_Mur3 LINE L1 -592 5288 5261 7 850 717 193 44 0 chr5 34833519 34833654 -117703605 - B1_Mus1 SINE Alu -6 142 2 7 850 1661 262 264 8 chr5 34833654 34834810 -117702449 - L1_Mur3 LINE L1 -620 5260 3803 7 850 1244 34 0 14 chr5 34834851 34834999 -117702260 - B1_Mm SINE Alu -1 146 1 7 850 1060 220 193 2 chr5 34835004 34835350 -117701909 - L1_Mur3 LINE L1 -2940 2907 2487 7 850 1503 59 11 0 chr5 34835350 34835537 -117701722 - B2_Mm1t SINE B2 -4 189 1 7 850 526 281 198 28 chr5 34835537 34835585 -117701674 - L1_Mur3 LINE L1 -3361 2486 2446 7 850 453 182 68 0 chr5 34835603 34835691 -117701568 - PB1D9 SINE Alu -15 105 12 7 850 345 324 9 9 chr5 34835610 34835722 -117701537 - ID_B1 SINE B4 -52 172 61 7 850 802 258 60 12 chr5 34835727 34836057 -117701202 - L1_Mur3 LINE L1 -3456 2391 2044 7 850 1085 75 62 0 chr5 34836135 34836281 -117700978 - B2_Mm2 SINE B2 -30 165 11 7 850 933 250 45 29 chr5 34836285 34836671 -117700588 - L1_Mur3 LINE L1 -3912 1935 1536 7 850 1238 68 0 0 chr5 34836671 34836818 -117700441 - B1_Mus2 SINE Alu 0 147 1 7 850 623 313 29 100 chr5 34836818 34836848 -117700411 - L1_Mur3 LINE L1 -4283 1564 1549 7 850 744 283 35 15 chr5 34836848 34837049 -117700210 + B3 SINE B2 1 205 -11 7 850 623 313 29 100 chr5 34837049 34837060 -117700199 - L1_Mur3 LINE L1 -4299 1548 1539 7 850 1553 37 10 10 chr5 34837060 34837253 -117700006 - B2_Mm1t SINE B2 0 193 1 7 850 623 313 29 100 chr5 34837253 34837612 -117699647 - L1_Mur3 LINE L1 -4309 1538 1203 7 850 387 307 132 16 chr5 34837624 34837866 -117699393 - L1M4 LINE L1 -5301 1241 972 7 850 937 261 225 3 chr5 34838238 34838549 -117698710 - MTE-int LTR MaLR -115 1465 1086 7 850 234 239 122 22 chr5 34838553 34838643 -117698616 + MIRm SINE MIR 62 160 -116 7 850 226 147 0 0 chr5 34840762 34840796 -117696463 + 5S rRNA rRNA 2 35 -86 7 850 213 65 0 0 chr5 34842584 34842615 -117694644 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 7 850 906 158 20 0 chr5 34842615 34842752 -117694507 - B1_Mur4 SINE Alu -8 142 3 7 850 820 314 66 40 chr5 34842847 34843119 -117694140 + B4A SINE B4 14 292 0 7 850 704 125 69 0 chr5 34843173 34843317 -117693942 - RMER17B LTR ERVK -495 463 310 7 850 670 264 102 57 chr5 34844887 34845245 -117692014 + ORR1E LTR MaLR 1 379 0 7 850 446 215 108 0 chr5 34846509 34846602 -117690657 + PB1D10 SINE Alu 7 109 -8 7 850 477 239 16 71 chr5 34846690 34846816 -117690443 + ID_B1 SINE B4 84 202 -22 7 850 538 174 0 60 chr5 34847000 34847116 -117690143 + B1_Mus1 SINE Alu 40 148 0 7 850 222 37 0 0 chr5 34847116 34847143 -117690116 + (A)n Simple_repeat Simple_repeat 1 27 0 7 850 532 257 126 54 chr5 34847147 34847386 -117689873 + MLT1B LTR MaLR 135 390 0 7 850 643 207 9 0 chr5 34847415 34847526 -117689733 + B1F SINE Alu 1 112 -37 7 850 377 253 52 10 chr5 34847551 34847647 -117689612 - PB1D7 SINE Alu 0 120 21 7 850 902 108 15 0 chr5 34847707 34847837 -117689422 + B1_Mur4 SINE Alu 6 137 -13 7 850 1008 230 39 101 chr5 34847866 34848053 -117689206 + B3 SINE B2 1 186 -30 7 850 195 42 0 0 chr5 34848053 34848077 -117689182 + (TA)n Simple_repeat Simple_repeat 1 24 0 7 850 591 230 39 101 chr5 34848077 34848097 -117689162 + B2_Mm2 SINE B2 176 195 0 7 850 560 254 97 21 chr5 34848451 34848596 -117688663 - RSINE1 SINE B4 -8 157 2 7 850 880 159 186 26 chr5 34848672 34848866 -117688393 - URR1B DNA MER1_type 0 225 1 7 850 424 179 48 0 chr5 34849308 34849392 -117687867 - PB1D9 SINE Alu 0 120 33 7 850 591 293 6 11 chr5 34849601 34849784 -117687475 + B3A SINE B2 1 182 -16 7 850 1005 207 54 10 chr5 34849808 34850013 -117687246 + B3 SINE B2 3 216 0 7 850 207 0 0 0 chr5 34850255 34850278 -117686981 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 850 437 255 31 0 chr5 34850278 34850376 -117686883 - PB1D10 SINE Alu -10 107 7 7 850 843 123 0 0 chr5 34850703 34850825 -117686434 + B2_Mm2 SINE B2 1 122 -73 7 850 518 257 0 52 chr5 34850905 34851020 -117686239 - PB1D10 SINE Alu -2 115 7 7 850 180 0 0 0 chr5 34851346 34851366 -117685893 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 7 850 383 204 11 227 chr5 34851372 34851533 -117685726 - B1_Mur4 SINE Alu -7 143 1 7 850 378 0 0 0 chr5 34851589 34851631 -117685628 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 850 888 139 44 0 chr5 34851776 34851913 -117685346 - B1_Mur2 SINE Alu 0 149 7 7 850 472 175 29 137 chr5 34851796 34851935 -117685324 - MT2B LTR ERVL -326 275 152 7 850 660 242 39 19 chr5 34851928 34852084 -117685175 - B3A SINE B2 -4 194 36 7 850 345 93 0 0 chr5 34852092 34852146 -117685113 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 7 850 539 257 18 9 chr5 34852150 34852260 -117684999 - PB1D9 SINE Alu -4 116 6 7 850 690 173 23 30 chr5 34852539 34852670 -117684589 + ORR1D1 LTR MaLR 1 130 -244 7 850 1207 122 15 41 chr5 34852778 34852974 -117684285 + B2_Mm2 SINE B2 1 191 -4 7 850 420 241 47 60 chr5 34853727 34853877 -117683382 + B1F1 SINE Alu 2 149 0 7 850 1452 88 16 0 chr5 34853888 34854080 -117683179 + B2_Mm2 SINE B2 1 195 0 7 850 1230 41 0 7 chr5 34854080 34854216 -117683043 + B1_Mm SINE Alu 1 136 -11 7 850 243 0 0 0 chr5 34854216 34854243 -117683016 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 850 920 57 0 8 chr5 34854254 34854378 -117682881 + (GGA)n Simple_repeat Simple_repeat 2 124 0 7 850 292 212 171 34 chr5 34854390 34854499 -117682760 + ID4_ SINE ID 11 123 -29 7 850 2250 152 40 5 chr5 34855160 34855531 -117681728 + ORR1C2 LTR MaLR 1 384 0 7 850 715 232 106 42 chr5 34857594 34857875 -117679384 - ORR1D1 LTR MaLR -8 366 3 7 850 944 119 7 34 chr5 34858227 34858375 -117678884 + B1_Mur4 SINE Alu 6 149 -1 7 850 208 232 8 51 chr5 34858536 34858654 -117678605 + (TATATG)n Simple_repeat Simple_repeat 5 117 0 7 850 1119 236 45 55 chr5 34858662 34858953 -117678306 - B4A SINE B4 -3 289 2 7 850 773 200 43 7 chr5 34859021 34859162 -117678097 - B1_Mur1 SINE Alu -1 148 3 7 850 605 243 44 0 chr5 34859176 34859312 -117677947 - B1F SINE Alu -7 142 1 7 850 314 244 12 37 chr5 34859466 34859547 -117677712 - MER46C DNA MER2_type -258 80 2 7 850 1099 218 141 40 chr5 34859749 34860046 -117677213 + MTEa LTR MaLR 51 377 -2 7 850 350 251 51 21 chr5 34860127 34860230 -117677029 + PB1D10 SINE Alu 15 117 -30 7 850 278 295 0 71 chr5 34860877 34860961 -117676298 - B1F2 SINE Alu -71 78 1 7 850 473 291 5 103 chr5 34860964 34861094 -117676165 + HAL1 LINE L1 962 1082 -1425 7 850 1116 81 0 13 chr5 34861094 34861244 -117676015 + B1_Mus1 SINE Alu 1 148 0 7 850 473 291 5 103 chr5 34861244 34861308 -117675951 + HAL1 LINE L1 1083 1137 -1370 7 850 248 310 113 0 chr5 34861309 34861380 -117675879 + ID SINE ID 10 88 -136 7 850 396 0 0 0 chr5 34861424 34861468 -117675791 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 850 266 294 0 0 chr5 34861468 34861599 -117675660 + (TA)n Simple_repeat Simple_repeat 1 131 0 7 850 1047 52 96 0 chr5 34861640 34861775 -117675484 + B1_Mus1 SINE Alu 1 148 0 7 850 189 0 0 0 chr5 34861775 34861796 -117675463 + (A)n Simple_repeat Simple_repeat 1 21 0 7 850 284 159 72 0 chr5 34861819 34861888 -117675371 + HAL1 LINE L1 1673 1746 -761 7 850 23 0 0 0 chr5 34862043 34862066 -117675193 + AT_rich Low_complexity Low_complexity 1 23 0 7 850 441 263 123 0 chr5 34862358 34862472 -117674787 - B1F SINE Alu -21 128 1 7 850 212 191 0 0 chr5 34864993 34865035 -117672224 - L2b LINE L2 -5 3370 3329 7 851 1473 68 5 5 chr5 34865183 34865376 -117671883 + B2_Mm1a SINE B2 1 193 0 7 851 573 276 55 61 chr5 34865421 34865602 -117671657 + B4A SINE B4 113 292 0 7 851 525 299 6 83 chr5 34865666 34865834 -117671425 - RSINE1 SINE B4 0 165 11 7 851 1368 134 9 5 chr5 34865832 34866049 -117671210 + URR1B DNA MER1_type 8 225 0 7 851 188 209 86 75 chr5 34866201 34866294 -117670965 - L2b LINE L2 -336 3039 2946 7 851 597 191 0 38 chr5 34867563 34867748 -117669511 + G-rich Low_complexity Low_complexity 1 178 0 7 851 500 318 86 24 chr5 34867780 34867973 -117669286 + L1MC4 LINE L1 957 1066 -5149 7 851 1249 55 0 0 chr5 34867973 34868119 -117669140 + B1_Mm SINE Alu 2 147 0 7 851 500 321 73 35 chr5 34868119 34868321 -117668938 + L1MC4 LINE L1 1067 1283 -4932 7 851 561 58 0 0 chr5 34870471 34870540 -117666719 + B2_Mm2 SINE B2 2 70 -125 7 851 256 268 13 53 chr5 34870476 34870551 -117666708 + tRNA-Cys-TGY tRNA tRNA 1 72 -3 7 851 214 337 21 11 chr5 34870540 34870564 -117666695 + B4A SINE B4 2 95 -197 7 851 891 172 29 20 chr5 34870834 34871026 -117666233 - B3 SINE B2 -1 194 1 7 851 186 71 0 0 chr5 34872091 34872119 -117665140 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 7 851 1283 27 7 0 chr5 34872123 34872269 -117664990 - B1_Mus1 SINE Alu -1 147 1 7 851 574 121 88 0 chr5 34873297 34873388 -117663871 + U1 snRNA snRNA 1 99 -66 7 851 215 229 16 16 chr5 34874832 34874894 -117662365 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 851 865 181 0 0 chr5 34874926 34875064 -117662195 + B1_Mus1 SINE Alu 9 146 -2 7 851 1074 305 15 15 chr5 34875096 34875359 -117661900 - B4A SINE B4 -4 288 26 7 851 530 259 38 15 chr5 34875394 34875527 -117661732 + B1F2 SINE Alu 1 136 -13 7 851 231 170 64 0 chr5 34877097 34877144 -117660115 + PB1 SINE Alu 76 125 -2 7 851 236 358 12 0 chr5 34877146 34877227 -117660032 + ID4 SINE ID 1 82 -1 7 851 1032 88 0 56 chr5 34878254 34878398 -117658861 + B1_Mus1 SINE Alu 1 136 -12 7 851 191 242 112 112 chr5 34878424 34878531 -117658728 - MIRc SINE MIR -147 121 12 7 851 1347 154 18 5 chr5 34879796 34880018 -117657241 - URR1A DNA MER1_type -1 225 1 7 851 1297 27 0 0 chr5 34880303 34880449 -117656810 + B1_Mm SINE Alu 2 147 0 8 851 185 205 0 25 chr5 34880806 34880846 -117656413 - MIRc SINE MIR -121 147 109 8 851 510 129 0 0 chr5 34882512 34882597 -117654662 + (CTTG)n Simple_repeat Simple_repeat 4 88 0 8 851 665 190 31 57 chr5 34882604 34882856 -117654403 - Lx4B LINE L1 -43 7007 6695 8 851 625 219 8 0 chr5 34882892 34883011 -117654248 - PB1D9 SINE Alu 0 120 1 8 851 426 39 0 0 chr5 34886596 34886648 -117650611 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 851 235 224 24 0 chr5 34887170 34887236 -117650023 + MIRc SINE MIR 99 169 -107 8 851 209 159 23 0 chr5 34887470 34887514 -117649745 + (TA)n Simple_repeat Simple_repeat 2 46 0 8 851 559 266 72 61 chr5 34887515 34887695 -117649564 - B3A SINE B2 -16 182 1 8 851 1633 190 108 12 chr5 34887785 34888126 -117649133 - ORR1D1 LTR MaLR 0 374 1 8 851 218 283 17 0 chr5 34888376 34888436 -117648823 + (TATG)n Simple_repeat Simple_repeat 3 63 0 8 851 638 258 116 33 chr5 34890070 34890179 -117647080 - L1M4 LINE L1 -1846 4300 4174 8 851 675 249 132 0 chr5 34890179 34890368 -117646891 - B3 SINE B2 0 216 3 8 851 638 258 116 33 chr5 34890368 34890559 -117646700 - L1M4 LINE L1 -1973 4173 3975 8 851 348 161 0 0 chr5 34890565 34890627 -117646632 + CT-rich Low_complexity Low_complexity 3 64 0 8 851 254 265 15 0 chr5 34890650 34890718 -117646541 - L1M4 LINE L1 -2368 3778 3710 8 851 336 250 233 0 chr5 34890723 34890858 -117646401 + ID_B1 SINE B4 1 167 -57 8 851 259 312 130 0 chr5 34890796 34890873 -117646386 + PB1D10 SINE Alu 25 111 -6 8 851 312 188 12 36 chr5 34890894 34890977 -117646282 - L1MC LINE L1 -2433 3713 3633 8 851 473 192 30 0 chr5 34891187 34891286 -117645973 + PB1D7 SINE Alu 2 103 -17 8 851 441 0 0 0 chr5 34892888 34892937 -117644322 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 851 470 17 0 17 chr5 34892938 34892998 -117644261 + (TG)n Simple_repeat Simple_repeat 1 59 0 8 851 249 296 3 0 chr5 34893098 34893168 -117644091 - B1F1 SINE Alu -49 78 8 8 851 393 270 71 97 chr5 34895995 34896221 -117641038 - RMER12 LTR ERVK -2 1320 1101 8 851 6268 59 6 8 chr5 34896475 34897301 -117639958 - RLTR22_Mus LTR ERVK -984 824 1 8 851 2742 121 36 51 chr5 34897571 34898043 -117639216 + RMER4A LTR ERVK 1 465 -1 8 851 525 244 76 0 chr5 34900116 34900235 -117637024 - B1_Mm SINE Alu -18 129 2 8 851 1538 68 0 0 chr5 34904735 34904925 -117632334 + B2_Mm1t SINE B2 2 191 -2 8 851 1104 143 94 30 chr5 34906271 34906473 -117630786 - B3 SINE B2 0 216 2 8 851 220 224 88 50 chr5 34907318 34907398 -117629861 + MIR SINE MIR 34 116 -92 8 851 208 281 0 17 chr5 34907576 34907634 -117629625 - MIR SINE MIR -57 151 95 8 851 317 243 0 41 chr5 34907841 34907914 -117629345 - ID4 SINE ID -12 71 2 8 851 238 306 12 0 chr5 34908644 34908729 -117628530 - L1ME3A LINE L1 -228 5945 5860 8 851 257 291 119 100 chr5 34908768 34908978 -117628281 - MamGypLTR1c LTR Gypsy -257 546 333 8 851 991 210 40 5 chr5 34909032 34909233 -117628026 - B3 SINE B2 -6 210 3 8 851 507 268 0 48 chr5 34909244 34909389 -117627870 - B1F2 SINE Alu -7 142 5 8 851 183 42 0 0 chr5 34909427 34909451 -117627808 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 851 1064 103 0 0 chr5 34909451 34909587 -117627672 - B1_Mus2 SINE Alu -10 137 2 8 851 516 16 0 0 chr5 34909612 34909673 -117627586 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 8 851 1120 84 0 0 chr5 34909676 34909818 -117627441 - B2_Mm2 SINE B2 -53 142 1 8 851 1208 77 12 8 chr5 34909831 34910017 -117627242 - B2_Mm1t SINE B2 -2 193 9 8 851 297 0 0 0 chr5 34910155 34910188 -117627071 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 851 441 0 0 0 chr5 34910188 34910236 -117627023 + (GA)n Simple_repeat Simple_repeat 1 49 0 8 851 430 245 0 39 chr5 34910369 34910471 -117626788 - B3A SINE B2 -98 100 3 8 851 332 308 15 100 chr5 34910505 34910635 -117626624 - B4A SINE B4 -128 164 46 8 851 236 274 13 40 chr5 34910823 34910899 -117626360 + ID4 SINE ID 2 75 -8 8 851 1161 66 0 0 chr5 34910992 34911129 -117626130 + B1_Mus2 SINE Alu 1 137 -10 8 851 525 38 0 1 chr5 34911129 34911193 -117626066 + B1_Mus2 SINE Alu 49 137 -10 8 851 623 63 0 0 chr5 34911189 34911268 -117625991 + B1_Mm SINE Alu 69 147 0 8 851 406 211 0 111 chr5 34911299 34911314 -117625945 + MT2B LTR ERVL 155 156 -445 8 851 729 168 17 0 chr5 34911314 34911433 -117625826 + B1_Mus2 SINE Alu 1 121 -26 8 851 261 256 60 60 chr5 34911359 34911442 -117625817 + RLTR25A LTR ERVK 523 605 -498 8 851 813 173 0 0 chr5 34911918 34912074 -117625185 + CT-rich Low_complexity Low_complexity 1 156 0 8 851 708 230 57 7 chr5 34912074 34912214 -117625045 - B1_Mur1 SINE Alu -1 148 2 8 851 1192 57 0 0 chr5 34912225 34912366 -117624893 - B1_Mus1 SINE Alu -6 142 2 8 851 528 298 5 104 chr5 34912410 34912612 -117624647 - B3A SINE B2 -16 182 1 8 851 839 227 54 10 chr5 34912859 34913064 -117624195 + B3 SINE B2 2 215 -1 8 851 745 276 0 0 chr5 34913080 34913232 -117624027 + B3 SINE B2 15 166 -50 8 851 956 157 0 13 chr5 34913267 34913416 -117623843 + B1_Mur2 SINE Alu 2 148 -1 8 851 2009 159 56 14 chr5 34913726 34914084 -117623175 + RLTR14 LTR ERV1 1 373 -9 8 851 1000 243 99 15 chr5 34914289 34914552 -117622707 - B4A SINE B4 -1 291 7 8 851 340 225 139 16 chr5 34914680 34914802 -117622457 - L1MEc LINE L1 -5256 1144 1008 8 851 311 250 0 0 chr5 34914805 34914869 -117622390 - B3A SINE B2 -38 160 97 8 851 3742 14 0 0 chr5 34914923 34915352 -117621907 + MERVL-int LTR ERVL 2003 2431 -3054 8 851 1172 28 13 27 chr5 34915542 34915691 -117621568 - B1_Mm SINE Alu 0 147 1 8 851 203 253 32 42 chr5 34916389 34916484 -117620775 + G-rich Low_complexity Low_complexity 2 95 0 8 851 183 42 0 0 chr5 34916633 34916657 -117620602 + (CAGGG)n Simple_repeat Simple_repeat 3 26 0 8 851 265 185 176 47 chr5 34917553 34917638 -117619621 - B1F2 SINE Alu -49 100 5 8 851 1860 164 92 25 chr5 34917993 34918386 -117618873 + MTD LTR MaLR 1 419 0 8 851 1267 41 0 0 chr5 34918649 34918796 -117618463 + B1_Mm SINE Alu 1 147 0 8 851 750 280 126 0 chr5 34918952 34919134 -117618125 + ID_B1 SINE B4 2 206 -18 8 851 397 208 0 38 chr5 34919607 34919687 -117617572 + B3A SINE B2 1 77 -121 8 851 679 232 53 7 chr5 34919705 34919857 -117617402 - MTC LTR MaLR -8 413 255 8 851 565 239 30 0 chr5 34919861 34919995 -117617264 - MTC LTR MaLR -281 138 1 8 851 204 40 0 0 chr5 34920065 34920090 -117617169 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 851 626 209 97 0 chr5 34920097 34920231 -117617028 + B1_Mur1 SINE Alu 3 149 0 8 851 580 143 141 74 chr5 34920257 34920378 -117616881 + B3 SINE B2 1 129 -87 8 851 628 143 9 9 chr5 34920424 34920530 -117616729 + B1_Mus2 SINE Alu 32 137 -10 8 851 424 197 16 0 chr5 34920610 34920707 -117616552 - B1_Mm SINE Alu -3 117 18 8 851 282 362 8 41 chr5 34921045 34921166 -117616093 - B4A SINE B4 -113 179 63 8 851 401 263 112 38 chr5 34921202 34921284 -117615975 - MIR SINE MIR -43 165 75 8 851 1281 213 118 15 chr5 34921284 34921622 -117615637 + ORR1D1 LTR MaLR 2 374 0 8 851 401 260 111 37 chr5 34921622 34921666 -117615593 - MIR SINE MIR -188 74 29 8 851 1392 46 79 17 chr5 34921741 34921918 -117615341 + B2_Mm2 SINE B2 1 188 -7 8 851 27 0 0 0 chr5 34921930 34921957 -117615302 + AT_rich Low_complexity Low_complexity 1 27 0 8 851 22 0 0 0 chr5 34922047 34922069 -117615190 + AT_rich Low_complexity Low_complexity 1 22 0 8 851 752 76 235 0 chr5 34922069 34922188 -117615071 - B1_Mm SINE Alu 0 147 1 8 851 7400 62 4 12 chr5 34922386 34923386 -117613873 + L1_Mus1 LINE L1 5568 6567 0 8 851 326 280 0 13 chr5 34923436 34923512 -117613747 + ID SINE ID 2 76 -148 8 851 458 250 0 0 chr5 34923548 34923640 -117613619 - ID_B1 SINE B4 -8 216 125 8 851 230 118 0 0 chr5 34923686 34923720 -117613539 - BC1_Mm scRNA scRNA -117 35 2 8 851 1395 46 81 0 chr5 34923884 34924043 -117613216 + B2_Mm1t SINE B2 2 160 -33 8 851 243 0 0 0 chr5 34924043 34924070 -117613189 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 8 851 1395 46 81 0 chr5 34924070 34924083 -117613176 + B2_Mm1t SINE B2 161 186 -7 8 851 1403 41 0 0 chr5 34924144 34924314 -117612945 - B2_Mm1t SINE B2 -23 170 1 8 851 486 0 0 0 chr5 34924488 34924542 -117612717 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 851 378 0 0 0 chr5 34924628 34924670 -117612589 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 851 226 250 0 35 chr5 34924941 34924999 -117612260 - B1F SINE Alu -93 56 1 8 851 346 263 76 55 chr5 34925381 34925526 -117611733 - B1F1 SINE Alu 0 149 2 8 851 303 328 0 63 chr5 34925572 34925715 -117611544 - RSINE1 SINE B4 -28 137 4 8 851 244 302 86 79 chr5 34925767 34925907 -117611352 + ID_B1 SINE B4 80 220 -4 8 851 648 210 24 0 chr5 34926129 34926253 -117611006 - B1_Mus2 SINE Alu -20 127 1 8 851 376 264 35 43 chr5 34926268 34926383 -117610876 - PB1D9 SINE Alu -4 116 3 8 851 2928 225 84 19 chr5 34926597 34927409 -117609850 - Lx8 LINE L1 -334 7139 6275 8 851 603 265 7 26 chr5 34927422 34927573 -117609686 - B1_Mur1 SINE Alu -1 148 1 8 851 339 130 0 0 chr5 34927576 34927630 -117609629 + (T)n Simple_repeat Simple_repeat 1 54 0 8 851 21 36 0 0 chr5 34927657 34927685 -117609574 + AT_rich Low_complexity Low_complexity 1 28 0 9 851 328 214 155 48 chr5 34927797 34927900 -117609359 - MTEa LTR MaLR -264 115 2 9 851 201 273 110 33 chr5 34928478 34928569 -117608690 - MIR SINE MIR -108 160 63 9 851 431 306 29 29 chr5 34928571 34928709 -117608550 - B1F SINE Alu 0 149 12 9 851 765 255 149 63 chr5 34929015 34929283 -117607976 - B4A SINE B4 -1 291 1 9 851 316 306 11 34 chr5 34929352 34929440 -117607819 - PB1D7 SINE Alu -1 119 34 9 851 191 229 20 20 chr5 34930293 34930342 -117606917 - L2a LINE L2 -88 3338 3290 9 851 373 308 0 8 chr5 34930467 34930585 -117606674 - PB1D10 SINE Alu 0 117 1 9 851 309 215 177 14 chr5 34930757 34930841 -117606418 + B3A SINE B2 2 92 -124 9 851 1054 126 33 49 chr5 34930856 34931040 -117606219 - URR1B DNA MER1_type -43 182 2 9 851 1038 116 7 0 chr5 34931109 34931256 -117606003 - B1_Mur4 SINE Alu -2 148 1 9 851 289 262 67 10 chr5 34931284 34931388 -117605871 + PB1D7 SINE Alu 2 111 -9 9 851 1165 71 0 0 chr5 34931534 34931675 -117605584 + B1_Mus1 SINE Alu 3 143 -5 9 851 1365 144 244 9 chr5 34931712 34932027 -117605232 - MTC LTR MaLR -32 389 1 9 851 495 33 0 0 chr5 34932036 34932097 -117605162 + (TC)n Simple_repeat Simple_repeat 2 62 0 9 851 927 119 164 30 chr5 34932098 34932263 -117604996 - B2_Mm2 SINE B2 -8 187 1 9 851 568 178 98 56 chr5 34932289 34932432 -117604827 - B1F1 SINE Alu 0 149 1 9 851 30 59 0 0 chr5 34933720 34933771 -117603488 + AT_rich Low_complexity Low_complexity 1 51 0 9 851 22 0 0 0 chr5 34934648 34934670 -117602589 + AT_rich Low_complexity Low_complexity 1 22 0 9 851 2531 50 31 16 chr5 34934670 34934993 -117602266 - L1_Mus1 LINE L1 0 6567 6240 9 851 478 224 20 0 chr5 34935000 34935098 -117602161 + PB1D9 SINE Alu 21 120 0 9 851 844 81 65 0 chr5 34935110 34935234 -117602025 + B1_Mur4 SINE Alu 1 132 -18 9 851 25 0 0 0 chr5 34935335 34935360 -117601899 + AT_rich Low_complexity Low_complexity 1 25 0 9 851 376 219 54 14 chr5 34935499 34935573 -117601686 - B1F2 SINE Alu -69 80 4 9 851 284 271 0 33 chr5 34935520 34935581 -117601678 - ID_B1 SINE B4 -87 137 79 9 851 226 95 286 0 chr5 34935759 34935801 -117601458 - B1F1 SINE Alu 0 117 64 9 851 313 98 339 28 chr5 34935799 34935908 -117601351 - B2_Mm2 SINE B2 -6 189 47 9 851 740 143 231 0 chr5 34935972 34936119 -117601140 - B2_Mm1t SINE B2 -12 181 1 9 851 214 276 0 33 chr5 34936119 34936170 -117601089 - PB1D10 SINE Alu -41 76 27 9 851 647 220 15 22 chr5 34936267 34936402 -117600857 - B1_Mur2 SINE Alu -15 134 1 9 851 746 185 8 0 chr5 34936428 34936558 -117600701 - B1_Mur4 SINE Alu 0 150 20 9 851 261 75 0 0 chr5 34936558 34936598 -117600661 + (T)n Simple_repeat Simple_repeat 1 40 0 9 851 765 203 38 0 chr5 34936676 34936809 -117600450 + B1_Mus1 SINE Alu 4 141 -7 9 851 183 42 0 0 chr5 34936818 34936842 -117600417 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 851 1003 168 6 30 chr5 34937083 34937249 -117600010 + B3 SINE B2 45 206 -10 9 851 27 0 0 0 chr5 34937675 34937702 -117599557 + AT_rich Low_complexity Low_complexity 1 27 0 9 851 1230 61 0 0 chr5 34937753 34937900 -117599359 - B1_Mus1 SINE Alu 0 148 2 9 851 693 0 0 0 chr5 34938365 34938442 -117598817 + (TTTC)n Simple_repeat Simple_repeat 4 80 0 9 851 942 191 126 0 chr5 34938863 34939046 -117598213 + B3 SINE B2 2 207 -9 9 851 916 145 0 14 chr5 34939046 34939186 -117598073 - B1_Mur3 SINE Alu -3 146 9 9 851 21 36 0 0 chr5 34939195 34939223 -117598036 + AT_rich Low_complexity Low_complexity 1 28 0 9 851 828 117 117 0 chr5 34939295 34939423 -117597836 - B1_Mur3 SINE Alu -5 144 2 9 851 502 284 0 0 chr5 34939737 34939846 -117597413 + PB1D10 SINE Alu 9 117 0 9 851 912 257 120 0 chr5 34939985 34940285 -117596974 - MLT1C LTR MaLR -15 452 117 9 851 1083 70 20 27 chr5 34940293 34940440 -117596819 - B1_Mus2 SINE Alu 0 147 2 9 851 490 274 0 0 chr5 34940450 34940552 -117596707 - PB1D10 SINE Alu -8 109 8 9 851 429 283 77 70 chr5 34940621 34940765 -117596494 - RSINE1 SINE B4 -148 144 1 9 851 715 242 70 30 chr5 34940878 34941078 -117596181 - B3 SINE B2 -6 210 3 9 851 787 281 32 5 chr5 34941098 34941284 -117595975 - B3 SINE B2 -25 191 1 9 851 268 278 91 32 chr5 34941366 34941552 -117595707 - Lx8 LINE L1 -7 7466 7270 9 851 579 211 28 0 chr5 34942511 34942620 -117594639 + PB1D7 SINE Alu 9 120 0 9 851 270 351 72 0 chr5 34942622 34942733 -117594526 + RSINE1 SINE B4 1 119 -46 9 851 326 331 94 6 chr5 34942850 34943020 -117594239 - B3A SINE B2 -4 194 10 9 851 441 200 67 42 chr5 34943204 34943324 -117593935 - ID_B1 SINE B4 0 224 102 9 851 650 172 2 28 chr5 34943281 34943408 -117593851 + B1_Mur4 SINE Alu 13 137 -13 9 851 390 196 52 12 chr5 34943491 34943592 -117593667 + B1_Mur4 SINE Alu 6 143 -7 9 851 225 0 0 0 chr5 34945646 34945671 -117591588 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9 851 425 261 45 90 chr5 34946221 34946377 -117590882 + B1F2 SINE Alu 1 149 0 9 851 272 320 118 13 chr5 34946523 34946599 -117590660 - B1F1 SINE Alu -78 71 5 9 851 24 67 0 0 chr5 34946849 34946894 -117590365 + AT_rich Low_complexity Low_complexity 1 45 0 9 851 300 313 12 0 chr5 34947046 34947129 -117590130 - L1M5 LINE L1 -409 5715 5632 9 851 720 136 169 0 chr5 34947648 34947766 -117589493 - B1_Mur4 SINE Alu -10 140 3 9 851 333 131 0 0 chr5 34948869 34948930 -117588329 + (T)n Simple_repeat Simple_repeat 1 61 0 9 851 1281 41 0 0 chr5 34948930 34949077 -117588182 - B1_Mus1 SINE Alu 0 148 2 9 851 776 131 69 0 chr5 34949225 34949355 -117587904 - B1_Mus2 SINE Alu -1 146 8 9 851 652 268 60 5 chr5 34949403 34949602 -117587657 - B3 SINE B2 -6 210 1 9 851 443 195 0 25 chr5 34951484 34951563 -117585696 - B1_Mur1 SINE Alu -2 147 71 9 851 321 342 16 0 chr5 34951825 34951938 -117585321 - PB1D10 SINE Alu -23 124 6 9 851 321 26 0 0 chr5 34952114 34952152 -117585107 + (GA)n Simple_repeat Simple_repeat 1 38 0 9 851 471 248 135 73 chr5 34952311 34952489 -117584770 - B3A SINE B2 0 198 10 9 851 216 0 0 0 chr5 34952500 34952524 -117584735 + (A)n Simple_repeat Simple_repeat 1 24 0 9 851 768 218 0 13 chr5 34953348 34953497 -117583762 - B1_Mus1 SINE Alu -1 147 1 9 851 204 216 0 0 chr5 34953574 34953611 -117583648 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 851 661 272 104 81 chr5 34953617 34953877 -117583382 + B4A SINE B4 1 266 -26 9 851 219 173 0 0 chr5 34954083 34954135 -117583124 + CT-rich Low_complexity Low_complexity 3 54 0 9 851 232 304 0 132 chr5 34954143 34954249 -117583010 - PB1D7 SINE Alu -6 114 23 9 851 277 393 11 0 chr5 34954243 34954332 -117582927 - B1F1 SINE Alu -57 92 3 9 851 619 190 6 145 chr5 34954368 34954534 -117582725 - B1_Mur2 SINE Alu -6 143 1 9 851 1609 22 16 0 chr5 34954562 34954746 -117582513 + B2_Mm1a SINE B2 2 188 -5 9 851 329 287 16 80 chr5 34954888 34955013 -117582246 - PB1D10 SINE Alu 0 117 1 9 851 806 169 88 0 chr5 34955088 34955224 -117582035 + B1_Mur2 SINE Alu 2 149 0 9 851 1503 64 5 0 chr5 34955324 34955512 -117581747 - B2_Mm1t SINE B2 -3 190 2 9 851 1258 21 0 7 chr5 34957189 34957332 -117579927 + B1_Mus1 SINE Alu 2 143 -5 9 851 333 0 0 0 chr5 34957369 34957406 -117579853 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 9 851 741 304 25 15 chr5 34957406 34957610 -117579649 - ID_B1 SINE B4 -14 210 5 9 851 855 189 5 120 chr5 34957635 34957852 -117579407 - B3A SINE B2 -6 192 1 9 851 581 242 128 50 chr5 34957914 34958132 -117579127 - MTD LTR MaLR -94 325 82 9 851 609 316 29 0 chr5 34958383 34958519 -117578740 - RSINE1 SINE B4 -23 142 3 9 851 316 338 159 60 chr5 34958523 34958756 -117578503 - MLT1F2 LTR MaLR -16 544 289 9 851 249 33 0 0 chr5 34959094 34959124 -117578135 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 851 181 238 141 59 chr5 34960732 34960817 -117576442 + L3 LINE CR1 1616 1707 -2782 9 851 21 0 0 0 chr5 34960924 34960945 -117576314 + AT_rich Low_complexity Low_complexity 1 21 0 9 851 30 0 0 0 chr5 34963278 34963308 -117573951 + AT_rich Low_complexity Low_complexity 1 30 0 9 851 219 246 101 0 chr5 34964030 34964099 -117573160 + PB1D7 SINE Alu 44 119 -1 9 851 1219 36 0 0 chr5 34964197 34964336 -117572923 + B1_Mm SINE Alu 1 139 -8 9 851 241 26 26 26 chr5 34964336 34964375 -117572884 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 851 344 140 0 0 chr5 34965232 34965282 -117571977 - MTEb LTR MaLR -3 376 327 9 851 195 69 0 0 chr5 34965864 34965893 -117571366 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 851 1020 149 0 0 chr5 34967361 34967509 -117569750 + B1_Mur2 SINE Alu 2 149 0 9 851 215 278 40 40 chr5 34970331 34970406 -117566853 + RSINE1 SINE B4 83 157 -8 9 851 285 269 166 28 chr5 34970601 34970746 -117566513 - RSINE1 SINE B4 0 165 1 1 851 239 235 88 0 chr5 34970778 34970846 -117566413 + B1F SINE Alu 6 79 -70 1 851 448 340 47 20 chr5 34975025 34975175 -117562084 - RSINE1 SINE B4 -9 156 3 1 851 870 143 28 21 chr5 34975237 34975380 -117561879 - B1_Mur4 SINE Alu 0 150 7 1 851 368 239 58 130 chr5 34975243 34975397 -117561862 - B4 SINE B4 -69 223 81 1 851 979 83 98 0 chr5 34975406 34975539 -117561720 - B1_Mm SINE Alu 0 147 2 1 851 824 180 206 11 chr5 34975559 34975739 -117561520 - B3 SINE B2 0 216 2 1 851 978 127 27 0 chr5 34975928 34976078 -117561181 + B2_Mm2 SINE B2 15 168 -27 1 851 245 239 227 17 chr5 34976081 34976200 -117561059 + Lx8 LINE L1 7201 7344 -129 1 851 313 253 34 57 chr5 34980040 34980128 -117557131 - PB1D10 SINE Alu -5 112 27 1 851 292 308 46 46 chr5 34980128 34980237 -117557022 + ID_B1 SINE B4 86 194 -30 1 851 263 305 244 0 chr5 34982090 34982221 -117555038 + RSINE1 SINE B4 3 165 0 1 851 196 254 119 86 chr5 34982988 34983139 -117554120 - L2 LINE L2 -533 2886 2731 1 851 752 186 43 7 chr5 34984287 34984428 -117552831 + B1_Mus1 SINE Alu 2 147 -1 1 851 213 39 0 0 chr5 34984956 34984982 -117552277 + (T)n Simple_repeat Simple_repeat 1 26 0 1 851 4549 4 0 0 chr5 34984998 34985490 -117551769 - L1Md_A LINE L1 0 6582 6091 1 851 251 296 9 93 chr5 34985896 34985915 -117551344 + B4A SINE B4 69 78 -214 1 851 424 280 11 0 chr5 34985915 34986008 -117551251 + PB1 SINE Alu 1 94 -33 1 851 710 214 13 40 chr5 34986034 34986185 -117551074 - B1_Mur3 SINE Alu -2 147 1 1 851 247 261 140 11 chr5 34987183 34987276 -117549983 - PB1 SINE Alu -2 125 21 1 851 3166 51 18 8 chr5 34987777 34988169 -117549090 + MTA_Mm LTR MaLR 1 396 0 1 851 1914 121 69 16 chr5 34989190 34989508 -117547751 + Lx4A LINE L1 6724 7058 0 1 851 427 164 336 0 chr5 34991489 34991599 -117545660 + B1_Mm SINE Alu 1 147 0 1 851 186 133 0 0 chr5 34991621 34991651 -117545608 + (GAA)n Simple_repeat Simple_repeat 2 31 0 1 851 235 229 62 0 chr5 34991739 34991787 -117545472 + MIRc SINE MIR 117 167 -101 1 851 235 247 113 85 chr5 34993436 34993542 -117543717 + ORR1D1 LTR MaLR 25 133 -241 1 851 1943 121 0 58 chr5 34993938 34994281 -117542978 + BGLII LTR ERVK 1 323 -98 1 851 278 262 16 0 chr5 34995201 34995262 -117541997 + B3A SINE B2 1 62 -136 1 851 496 146 0 12 chr5 34995506 34995589 -117541670 - B1_Mur3 SINE Alu 0 149 68 1 851 275 246 20 101 chr5 34995589 34995749 -117541510 + PB1D10 SINE Alu 3 149 0 1 106 591 254 42 14 chr5 34996196 34996340 -117540919 + B1_Mur1 SINE Alu 1 148 -1 1 852 482 244 23 45 chr5 34997335 34997468 -117539791 - RSINE1 SINE B4 -4 161 32 1 852 383 269 152 40 chr5 34997821 34997972 -117539287 - B4A SINE B4 -13 279 112 1 852 260 243 287 35 chr5 34998042 34998157 -117539102 - RSINE1 SINE B4 -20 145 2 1 852 354 322 50 0 chr5 34998357 34998478 -117538781 + L2 LINE L2 2498 2624 -795 1 852 2365 40 0 3 chr5 34999700 35000000 -117537259 - L1Md_F2 LINE L1 -12 6570 6272 1 852 1450 41 0 0 chr5 35000000 35000170 -117537089 - L1Md_F2 LINE L1 -311 6271 6102 1 852 1209 68 0 7 chr5 35001040 35001188 -117536071 + B1_Mus1 SINE Alu 2 148 0 2 852 77 31 0 0 chr5 35001272 35001370 -117535889 + AT_rich Low_complexity Low_complexity 1 98 0 3 852 223 209 239 0 chr5 35001583 35001600 -117535659 - PB1D9 SINE Alu -18 102 23 4 852 232 200 0 43 chr5 35001600 35001647 -117535612 - MT2B LTR ERVL -370 231 187 5 852 1466 180 83 7 chr5 35002123 35002447 -117534812 + MTC LTR MaLR 3 374 -45 6 852 277 348 0 0 chr5 35003324 35003439 -117533820 + (CGG)n Simple_repeat Simple_repeat 3 117 0 7 852 1030 75 0 64 chr5 35004111 35004267 -117532992 + B1_Mus2 SINE Alu 1 146 -2 8 852 749 105 341 36 chr5 35004679 35004817 -117532442 + B2_Mm2 SINE B2 1 180 -15 9 852 345 104 0 0 chr5 35004832 35004885 -117532374 + B2_Mm2 SINE B2 57 109 -107 1 852 24 0 0 0 chr5 35004897 35004921 -117532338 + AT_rich Low_complexity Low_complexity 1 24 0 1 852 1312 104 22 0 chr5 35005090 35005272 -117531987 - B2_Mm1t SINE B2 -7 186 1 1 852 1758 21 0 10 chr5 35005285 35005478 -117531781 - B2_Mm1a SINE B2 -2 191 1 1 852 286 308 98 11 chr5 35005620 35005712 -117531547 + B4A SINE B4 46 145 -147 1 852 308 269 64 0 chr5 35005821 35005899 -117531360 + ID4 SINE ID 1 83 0 1 852 1123 192 45 5 chr5 35006791 35007011 -117530248 - MTC LTR MaLR 0 421 193 1 852 740 200 62 0 chr5 35007031 35007161 -117530098 - B1_Mus1 SINE Alu -9 139 2 1 852 2636 212 109 52 chr5 35007164 35007290 -117529969 - MTC-int LTR MaLR -24 1234 1103 1 852 1513 59 5 26 chr5 35007290 35007481 -117529778 + B2_Mm1t SINE B2 1 187 -6 1 852 2696 184 81 77 chr5 35007481 35008344 -117528915 - MTC-int LTR MaLR -156 1102 119 1 852 1653 52 16 0 chr5 35008344 35008536 -117528723 + B2_Mm2 SINE B2 1 195 0 2 852 2696 166 63 93 chr5 35008536 35008670 -117528589 - MTC-int LTR MaLR -1140 118 1 1 852 333 111 0 0 chr5 35008670 35008715 -117528544 - MTC LTR MaLR 0 421 377 1 852 1083 131 57 6 chr5 35008700 35008876 -117528383 - MTC LTR MaLR -236 185 1 1 852 1027 224 5 62 chr5 35009099 35009323 -117527936 + B3 SINE B2 1 211 -5 2 852 527 319 60 12 chr5 35009468 35009498 -117527761 - B3 SINE B2 -34 182 150 2 852 384 97 0 0 chr5 35009498 35009560 -117527699 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 852 572 292 58 0 chr5 35009560 35009697 -117527562 - B3A SINE B2 -47 151 7 2 852 24 32 0 0 chr5 35009775 35009806 -117527453 + AT_rich Low_complexity Low_complexity 1 31 0 2 852 399 122 167 0 chr5 35009923 35010013 -117527246 - Lx9 LINE L1 -86 7558 7454 2 852 30 27 0 0 chr5 35010032 35010069 -117527190 + AT_rich Low_complexity Low_complexity 1 37 0 2 852 3809 33 28 0 chr5 35010436 35010862 -117526397 + L1Md_F2 LINE L1 6133 6570 -12 2 852 1042 60 0 32 chr5 35011083 35011238 -117526021 - MusHAL1 LINE L1 -627 2085 1936 2 852 23 68 0 0 chr5 35011298 35011342 -117525917 + AT_rich Low_complexity Low_complexity 1 44 0 2 852 1225 82 0 0 chr5 35011358 35011505 -117525754 + B1_Mus1 SINE Alu 2 148 0 3 852 368 108 46 0 chr5 35011505 35011570 -117525689 + A-rich Low_complexity Low_complexity 2 69 0 3 852 307 297 64 39 chr5 35011596 35011715 -117525544 + PB1D10 SINE Alu 2 120 0 3 852 937 238 69 5 chr5 35012063 35012266 -117524993 + B3 SINE B2 1 216 0 3 852 448 258 60 38 chr5 35012281 35012414 -117524845 - B3 SINE B2 -30 186 51 3 852 772 311 24 5 chr5 35013238 35013451 -117523808 - ID_B1 SINE B4 -7 217 1 3 852 1036 210 134 9 chr5 35013613 35013844 -117523415 - MTD LTR MaLR -112 307 48 3 852 785 170 0 124 chr5 35013845 35013942 -117523317 + B3 SINE B2 1 94 -122 3 852 1419 61 49 22 chr5 35013942 35014127 -117523132 - B2_Mm2 SINE B2 -3 192 3 3 852 785 161 115 160 chr5 35014127 35014229 -117523030 + B3 SINE B2 95 191 -4 3 852 194 206 16 0 chr5 35014325 35014388 -117522871 + CT-rich Low_complexity Low_complexity 2 65 0 3 852 617 151 9 19 chr5 35014447 35014555 -117522704 + B1_Mur1 SINE Alu 42 148 -1 4 852 5137 119 19 42 chr5 35014676 35015575 -117521684 + RLTR13A3 LTR ERVK 1 978 0 4 852 530 291 0 0 chr5 35016077 35016194 -117521065 - PB1D10 SINE Alu 0 117 1 4 852 762 81 0 0 chr5 35016211 35016322 -117520937 + (TATG)n Simple_repeat Simple_repeat 4 114 0 4 852 1093 258 79 32 chr5 35016337 35016433 -117520826 - B4A SINE B4 -2 290 200 4 852 3423 41 10 0 chr5 35016433 35016825 -117520434 + MTA_Mm LTR MaLR 1 396 0 4 852 1093 258 79 32 chr5 35016825 35017005 -117520254 - B4A SINE B4 -93 199 1 4 852 543 214 12 136 chr5 35017417 35017579 -117519680 - B1F SINE Alu -7 142 1 4 852 1567 23 62 0 chr5 35017591 35017767 -117519492 - B2_Mm1t SINE B2 -5 188 2 4 852 899 234 65 20 chr5 35017841 35018042 -117519217 - B3 SINE B2 -5 211 2 4 852 353 83 417 0 chr5 35018053 35018149 -117519110 - B2_Mm2 SINE B2 0 195 60 4 852 869 250 15 45 chr5 35018190 35018214 -117519045 - MTEb LTR MaLR -183 196 177 5 852 1368 101 11 0 chr5 35018214 35018392 -117518867 - B2_Mm1t SINE B2 -13 180 1 5 852 869 250 15 45 chr5 35018392 35018568 -117518691 - MTEb LTR MaLR -203 176 2 5 852 310 263 135 28 chr5 35018865 35019006 -117518253 - HAL1-3A_ME LINE L1 -419 2439 2284 5 852 239 234 0 0 chr5 35019006 35019053 -117518206 + CT-rich Low_complexity Low_complexity 1 47 0 5 852 298 81 48 0 chr5 35019268 35019330 -117517929 + (TTTTTG)n Simple_repeat Simple_repeat 3 67 0 5 852 1215 75 0 7 chr5 35019333 35019481 -117517778 - B1_Mus2 SINE Alu 0 147 1 5 852 2485 61 13 0 chr5 35019515 35019826 -117517433 - L1_Mus1 LINE L1 -500 6067 5753 5 852 2293 70 0 0 chr5 35019826 35020098 -117517161 + L1_Mus1 LINE L1 6296 6567 0 5 852 542 234 54 15 chr5 35020165 35020295 -117516964 - B1_Mur1 SINE Alu -13 136 2 5 852 1057 169 6 22 chr5 35020388 35020570 -117516689 - B3 SINE B2 -35 181 3 5 852 243 73 18 35 chr5 35021074 35021131 -117516128 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 6 852 1261 28 14 0 chr5 35021131 35021276 -117515983 - B1_Mus1 SINE Alu -1 147 1 6 852 2990 63 2 89 chr5 35021489 35021733 -117515526 - L1_Mus1 LINE L1 0 6567 6434 6 852 1126 73 29 0 chr5 35021733 35021869 -117515390 + B1_Mm SINE Alu 3 142 -5 6 852 2990 63 2 89 chr5 35021869 35022133 -117515126 - L1_Mus1 LINE L1 -134 6433 6189 6 852 5176 77 37 7 chr5 35022149 35022832 -117514427 - Lx3_Mus LINE L1 -8 7001 6299 6 852 577 197 78 8 chr5 35022865 35022993 -117514266 + B1_Mur4 SINE Alu 14 150 0 6 852 265 312 92 78 chr5 35022868 35023021 -117514238 + B4A SINE B4 102 256 -36 6 852 225 293 158 57 chr5 35023037 35023085 -117514174 - MLT1A1 LTR MaLR -213 195 146 6 852 1124 180 36 14 chr5 35023085 35023305 -117513954 + URR1B DNA MER1_type 1 225 0 6 852 225 293 158 57 chr5 35023305 35023433 -117513826 - MLT1A1 LTR MaLR -263 145 1 6 852 28 29 0 0 chr5 35023593 35023628 -117513631 + AT_rich Low_complexity Low_complexity 1 35 0 6 852 727 247 187 0 chr5 35023633 35023815 -117513444 - B3 SINE B2 0 216 1 7 852 1068 156 96 30 chr5 35023823 35024021 -117513238 - B3 SINE B2 -4 212 2 7 852 671 195 102 0 chr5 35024043 35024171 -117513088 - B1_Mur2 SINE Alu 0 149 9 7 852 1224 94 23 12 chr5 35024172 35024345 -117512914 + B2_Mm2 SINE B2 2 176 -19 7 852 338 61 20 0 chr5 35024395 35024444 -117512815 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 852 499 295 16 8 chr5 35024492 35024615 -117512644 - RSINE1 SINE B4 -38 127 4 7 852 22 56 0 0 chr5 35024690 35024726 -117512533 + AT_rich Low_complexity Low_complexity 1 36 0 7 852 944 139 0 0 chr5 35025015 35025152 -117512107 - B1_Mur4 SINE Alu -2 148 12 7 852 615 274 42 17 chr5 35025155 35025360 -117511899 + L1M4 LINE L1 3960 4171 -1975 7 852 953 212 18 69 chr5 35025360 35025578 -117511681 + B3 SINE B2 1 207 -9 7 852 509 285 52 35 chr5 35025578 35025601 -117511658 + L1M4 LINE L1 4172 4192 -1954 7 852 5901 83 18 1 chr5 35025596 35027001 -117510258 + L1VL4 LINE L1 184 1611 -1948 8 852 12849 88 50 12 chr5 35026994 35029670 -117507589 + Lx3A LINE L1 4131 7009 0 8 852 15663 69 32 6 chr5 35029675 35031544 -117505715 + MusHAL1 LINE L1 355 2274 -438 8 852 180 0 0 0 chr5 35031544 35031564 -117505695 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 8 852 15663 69 32 6 chr5 35031564 35031798 -117505461 + MusHAL1 LINE L1 2275 2523 -189 8 852 1443 81 32 0 chr5 35031798 35031983 -117505276 - B2_Mm1t SINE B2 -1 192 2 8 852 15663 69 32 6 chr5 35031983 35032031 -117505228 + MusHAL1 LINE L1 2524 2562 -150 8 852 645 205 0 0 chr5 35032160 35032272 -117504987 + Lx6 LINE L1 6570 6681 -779 8 852 1341 81 65 0 chr5 35032281 35032534 -117504725 - ORR1A1 LTR MaLR -10 336 1 8 852 330 237 13 0 chr5 35032534 35032610 -117504649 + Lx6 LINE L1 6677 6753 -707 8 852 1381 101 17 0 chr5 35032612 35032790 -117504469 + B2_Mm2 SINE B2 1 181 -14 8 852 2011 271 69 29 chr5 35032811 35033664 -117503595 + L1M4 LINE L1 4154 5040 -1106 8 852 1320 41 0 0 chr5 35033705 35033852 -117503407 - B1_Mus2 SINE Alu 0 147 1 8 852 672 94 496 0 chr5 35033911 35034038 -117503221 + B2_Mm2 SINE B2 1 190 -5 9 852 949 230 64 0 chr5 35034045 35034232 -117503027 - B3 SINE B2 -14 202 4 9 852 1176 219 19 0 chr5 35034239 35034444 -117502815 - B3 SINE B2 -5 211 3 9 852 365 167 206 22 chr5 35034531 35034623 -117502636 - L1M4 LINE L1 -1333 4813 4705 9 852 1214 55 7 7 chr5 35034762 35034909 -117502350 + B1_Mus2 SINE Alu 1 147 0 9 852 574 98 2 36 chr5 35034932 35035029 -117502230 - B1_Mus1 SINE Alu -54 95 2 9 852 584 207 77 56 chr5 35035244 35035387 -117501872 - B1_Mur2 SINE Alu -1 148 3 9 852 3392 266 92 11 chr5 35035411 35036404 -117500855 - Lx8 LINE L1 0 7473 6401 9 852 463 318 108 15 chr5 35036405 35036664 -117500595 - L1MB2 LINE L1 -52 6119 5837 9 852 26 0 0 0 chr5 35036682 35036708 -117500551 + AT_rich Low_complexity Low_complexity 1 26 0 9 852 845 209 102 0 chr5 35036789 35036966 -117500293 + B3 SINE B2 2 196 -20 1 852 235 329 98 0 chr5 35037063 35037145 -117500114 - ID_B1 SINE B4 -132 92 3 1 852 382 304 70 18 chr5 35037551 35037665 -117499594 - ID_B1 SINE B4 -10 214 95 1 852 1228 68 0 0 chr5 35037770 35037916 -117499343 - B1_Mus2 SINE Alu 0 147 2 1 852 247 330 39 20 chr5 35038417 35038519 -117498740 + PB1D10 SINE Alu 2 105 -12 1 852 276 173 0 7 chr5 35038521 35038574 -117498685 + B2_Mm2 SINE B2 1 51 -147 1 852 928 134 35 3 chr5 35038593 35038764 -117498495 + B2_Mm2 SINE B2 1 183 -33 1 852 11236 139 52 15 chr5 35038764 35040574 -117496685 + MERVL_2A-int LTR ERVL 3622 5499 -262 1 852 1069 83 0 7 chr5 35040969 35041114 -117496145 + B1_Mus1 SINE Alu 5 148 0 1 852 243 243 125 45 chr5 35041156 35041268 -117495991 + ORR1A3-int LTR MaLR 544 664 -1299 1 852 675 188 0 8 chr5 35041296 35041414 -117495845 + MT2A LTR ERVL 1 117 -416 1 852 848 108 0 0 chr5 35041414 35041543 -117495716 - L1_Mm LINE L1 -4490 1393 1265 1 852 5296 86 9 1 chr5 35041546 35042290 -117494969 + L1_Mm LINE L1 1822 2571 -3312 1 852 4980 58 2 0 chr5 35042288 35042891 -117494368 + L1_Mus2 LINE L1 5800 6403 -163 1 852 2390 58 29 65 chr5 35042880 35043231 -117494028 + L1_Mus2 LINE L1 6228 6565 -1 1 852 255 315 53 26 chr5 35043279 35043393 -117493866 + MER117 DNA MER1_type 1 117 -80 1 852 1407 163 298 12 chr5 35043809 35044151 -117493108 + MT2A LTR ERVL 94 533 0 1 852 1388 270 67 14 chr5 35045077 35045847 -117491412 + Lx6 LINE L1 6058 6869 -591 1 852 690 251 52 44 chr5 35045835 35045929 -117491330 + Lx6 LINE L1 7220 7319 -141 1 852 639 0 0 0 chr5 35045929 35046000 -117491259 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 852 690 251 52 44 chr5 35046000 35046134 -117491125 + Lx6 LINE L1 7320 7450 -10 1 852 826 238 0 0 chr5 35046320 35046463 -117490796 - B1_Mur1 SINE Alu -4 145 3 1 852 1472 153 173 23 chr5 35046556 35046903 -117490356 + Lx9 LINE L1 7245 7643 -1 1 852 288 111 0 0 chr5 35046912 35046957 -117490302 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 852 342 302 15 31 chr5 35047015 35047145 -117490114 - BC1_Mm scRNA scRNA -22 130 3 1 852 262 260 59 50 chr5 35047460 35047561 -117489698 - MIR SINE MIR -123 139 38 1 852 953 172 20 7 chr5 35047889 35048035 -117489224 - B1_Mur4 SINE Alu 0 150 3 1 852 1442 45 28 11 chr5 35048223 35048401 -117488858 + B2_Mm2 SINE B2 2 182 -13 1 852 8875 69 8 11 chr5 35048401 35049285 -117487974 + Lx3A LINE L1 4717 5600 -286 1 852 3677 15 5 2 chr5 35049285 35049680 -117487579 - MTA_Mm LTR MaLR 0 396 1 1 852 10090 80 15 12 chr5 35049680 35051051 -117486208 + Lx3A LINE L1 5593 6968 -13 1 852 252 0 0 0 chr5 35051051 35051079 -117486180 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 852 272 282 141 0 chr5 35051438 35051509 -117485750 - ID4_ SINE ID -2 81 1 1 852 495 328 7 7 chr5 35051603 35051738 -117485521 + B4A SINE B4 6 140 -152 1 852 349 143 127 25 chr5 35052008 35052087 -117485172 - HAL1-3A_ME LINE L1 -796 2062 1976 1 852 239 273 0 0 chr5 35052087 35052142 -117485117 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 852 781 291 28 18 chr5 35052322 35052539 -117484720 - B4A SINE B4 -73 219 1 1 852 21 36 0 0 chr5 35052749 35052777 -117484482 + AT_rich Low_complexity Low_complexity 1 28 0 1 852 299 344 55 24 chr5 35053151 35053230 -117484029 + MIRb SINE MIR 84 164 -104 1 852 2268 157 45 6 chr5 35053230 35053583 -117483676 - ORR1B2 LTR MaLR 0 367 1 1 852 299 344 55 24 chr5 35053583 35053667 -117483592 + MIRb SINE MIR 165 252 -16 1 852 679 237 53 0 chr5 35053768 35053899 -117483360 - B1_Mur1 SINE Alu -7 142 5 1 852 1251 239 130 6 chr5 35054940 35055296 -117481963 - MTD LTR MaLR 0 419 19 1 852 430 81 14 0 chr5 35055296 35055370 -117481889 + L1_Mus3 LINE L1 6562 6636 -2 1 852 440 260 90 0 chr5 35055474 35055574 -117481685 + PB1D10 SINE Alu 8 116 -1 1 852 303 264 28 0 chr5 35055581 35055653 -117481606 + ID4 SINE ID 1 74 -9 1 852 1231 151 149 8 chr5 35056596 35056812 -117480447 + RLTR11A LTR ERVK 1 250 -278 1 852 376 223 79 86 chr5 35056812 35056964 -117480295 - RLTR13D3 LTR ERVK 0 1114 964 1 852 261 191 0 0 chr5 35057227 35057269 -117479990 - B2_Mm2 SINE B2 -153 42 1 1 852 1816 142 0 39 chr5 35057742 35058050 -117479209 + RLTR11A LTR ERVK 233 528 0 1 852 338 333 36 9 chr5 35058265 35058377 -117478882 + MIRb SINE MIR 4 118 -150 1 852 1473 242 49 16 chr5 35059001 35059367 -117477892 - MTEa LTR MaLR -1 378 1 1 852 198 0 0 0 chr5 35059825 35059847 -117477412 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 1 852 1342 82 3 6 chr5 35059849 35060179 -117477080 + (TTTC)n Simple_repeat Simple_repeat 1 329 0 1 852 244 355 0 0 chr5 35061509 35061571 -117475688 + ID4_ SINE ID 1 62 -21 1 852 218 353 120 110 chr5 35061571 35061700 -117475559 + ID_B1 SINE B4 1 193 -31 1 852 296 181 91 146 chr5 35061621 35061731 -117475528 + B1F SINE Alu 14 117 0 1 852 380 250 0 0 chr5 35061827 35061907 -117475352 + B1F SINE Alu 68 147 -2 1 852 180 0 0 0 chr5 35062307 35062327 -117474932 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 852 873 169 0 14 chr5 35062948 35063092 -117474167 + B1_Mur4 SINE Alu 8 149 -1 1 852 219 288 0 0 chr5 35063301 35063360 -117473899 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 852 351 292 127 73 chr5 35063373 35063632 -117473627 - B4A SINE B4 -16 276 4 1 852 705 56 0 0 chr5 35064153 35064243 -117473016 + (TTTC)n Simple_repeat Simple_repeat 2 91 0 1 852 38840 50 1 3 chr5 35064256 35070373 -117466886 - L1Md_F3 LINE L1 -15 6569 509 1 852 415 244 0 8 chr5 35070370 35070494 -117466765 - L1Md_A LINE L1 -5971 753 631 1 852 2185 137 114 0 chr5 35070509 35070852 -117466407 - ORR1C2 LTR MaLR -2 382 1 1 852 4196 123 33 5 chr5 35071202 35071830 -117465429 - RLTR13D3 LTR ERVK -468 646 1 1 852 369 0 0 0 chr5 35072812 35072853 -117464406 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 852 262 333 0 0 chr5 35073960 35074029 -117463230 - ID4 SINE ID -13 70 2 1 852 35 41 0 0 chr5 35074353 35074402 -117462857 + AT_rich Low_complexity Low_complexity 1 49 0 1 852 540 267 120 27 chr5 35074402 35074552 -117462707 - RSINE1 SINE B4 0 165 2 1 852 875 127 82 0 chr5 35074773 35074907 -117462352 - B1_Mus2 SINE Alu -2 145 1 1 852 6087 243 71 72 chr5 35074918 35075855 -117461404 - Lx6 LINE L1 0 7696 6867 1 852 432 0 0 0 chr5 35075855 35075903 -117461356 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 852 360 0 0 0 chr5 35075903 35075942 -117461317 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 852 6087 201 77 31 chr5 35075942 35077201 -117460058 - Lx6 LINE L1 -594 6866 5539 1 852 2826 153 35 70 chr5 35077200 35077807 -117459452 - Lx6 LINE L1 -1965 3915 3328 1 852 4902 89 26 8 chr5 35077807 35078472 -117458787 - L1_Mus4 LINE L1 0 6636 5960 1 852 6317 90 29 8 chr5 35078472 35079820 -117457439 - L1VL4 LINE L1 -1877 1682 301 1 852 961 159 117 88 chr5 35079845 35080128 -117457131 - Lx6 LINE L1 -2547 3333 3043 1 852 514 103 39 0 chr5 35080128 35080206 -117457053 - URR1B DNA MER1_type 0 225 145 1 852 1118 109 14 0 chr5 35080230 35080377 -117456882 - B1_Mur4 SINE Alu 0 150 2 1 852 7716 58 9 3 chr5 35080387 35081544 -117455715 - L1Md_F2 LINE L1 0 6582 5416 1 852 4138 96 3 30 chr5 35081541 35082714 -117454545 - L1Md_A LINE L1 -4119 1764 631 1 852 457 120 54 11 chr5 35082714 35082807 -117454452 - URR1B DNA MER1_type -68 157 61 1 852 5406 217 51 123 chr5 35082821 35083508 -117453751 - L1_Mur3 LINE L1 -2828 3058 2362 1 852 186 43 0 0 chr5 35083508 35083531 -117453728 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 1 852 1784 140 50 43 chr5 35083531 35083853 -117453406 - Lx3A LINE L1 -13 6968 6645 1 852 5406 217 61 90 chr5 35083853 35085503 -117451756 - L1_Mur3 LINE L1 -3525 2361 842 1 852 1414 247 89 16 chr5 35085503 35085931 -117451328 - L1_Mur3 LINE L1 -7168 560 102 1 852 1286 156 13 31 chr5 35086288 35086513 -117450746 - URR1B DNA MER1_type 0 225 5 1 852 548 41 0 26 chr5 35086572 35086648 -117450611 + (TCCC)n Simple_repeat Simple_repeat 2 75 0 1 852 621 202 41 5 chr5 35086654 35086802 -117450457 - B1_Mus2 SINE Alu 0 150 1 1 852 459 265 57 136 chr5 35087192 35087488 -117449771 - L1MB7 LINE L1 -11 6173 5895 1 852 708 234 0 28 chr5 35087530 35087671 -117449588 - B1_Mur4 SINE Alu -13 137 1 1 852 28 86 0 0 chr5 35087723 35087793 -117449466 + AT_rich Low_complexity Low_complexity 1 70 0 1 852 23 0 0 0 chr5 35088429 35088452 -117448807 + AT_rich Low_complexity Low_complexity 1 23 0 1 852 235 80 60 0 chr5 35088689 35088739 -117448520 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 1 852 1252 69 0 0 chr5 35088910 35089054 -117448205 + B1_Mus1 SINE Alu 1 144 -4 1 852 360 0 0 0 chr5 35089057 35089097 -117448162 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1 852 216 214 0 0 chr5 35089097 35089139 -117448120 + A-rich Low_complexity Low_complexity 1 42 0 1 852 510 256 0 17 chr5 35089155 35089274 -117447985 + Lx6 LINE L1 7208 7324 -136 1 852 245 290 52 31 chr5 35089321 35089417 -117447842 - MTD LTR MaLR -319 100 3 1 852 729 169 61 15 chr5 35089635 35089767 -117447492 + B1_Mur2 SINE Alu 1 138 -11 1 852 227 333 35 23 chr5 35089788 35089874 -117447385 + B1F1 SINE Alu 5 91 -58 1 852 347 287 152 81 chr5 35089880 35090077 -117447182 + B4A SINE B4 71 281 -11 1 852 261 259 0 0 chr5 35090048 35090106 -117447153 + RSINE1 SINE B4 108 165 0 1 852 21 0 0 0 chr5 35090318 35090339 -117446920 + AT_rich Low_complexity Low_complexity 1 21 0 1 852 627 231 108 0 chr5 35090369 35090499 -117446760 - B1_Mur1 SINE Alu -5 144 1 1 852 203 26 103 26 chr5 35090670 35090709 -117446550 + T-rich Low_complexity Low_complexity 3 44 0 1 852 237 174 65 0 chr5 35090709 35090755 -117446504 - B1_Mus2 SINE Alu 0 147 99 1 852 230 181 47 24 chr5 35091084 35091169 -117446090 + CT-rich Low_complexity Low_complexity 2 88 0 1 852 3315 58 30 11 chr5 35092253 35092688 -117444571 + Lx3_Mus LINE L1 6566 7008 -1 1 852 1104 37 0 82 chr5 35092769 35092916 -117444343 + B1_Mus1 SINE Alu 2 136 -12 2 852 333 0 0 0 chr5 35092916 35092953 -117444306 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 2 852 3507 43 5 2 chr5 35092960 35093356 -117443903 - MTB LTR MaLR -3 397 1 2 852 1244 71 107 6 chr5 35093608 35093777 -117443482 + B2_Mm2 SINE B2 2 187 -8 2 852 335 292 11 11 chr5 35093936 35094026 -117443233 + BC1_Mm scRNA scRNA 2 91 -61 2 852 276 239 84 0 chr5 35094044 35094115 -117443144 + PB1D10 SINE Alu 33 109 -8 2 852 241 24 73 0 chr5 35094918 35094959 -117442300 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 852 4550 108 8 65 chr5 35095167 35095995 -117441264 - RMER17D2 LTR ERVK 0 809 29 2 852 550 136 12 0 chr5 35095954 35096035 -117441224 - B1_Mm SINE Alu -44 103 22 2 852 286 318 33 22 chr5 35095999 35096089 -117441170 + PB1D9 SINE Alu 16 106 -14 2 852 318 148 0 0 chr5 35096090 35096144 -117441115 + (GGA)n Simple_repeat Simple_repeat 2 55 0 2 852 239 295 132 18 chr5 35096495 35096520 -117440739 - B1_Mur3 SINE Alu -17 132 6 2 852 299 337 11 0 chr5 35096520 35096609 -117440650 - ID_B1 SINE B4 -48 176 87 2 852 222 176 0 0 chr5 35097313 35097347 -117439912 - PB1 SINE Alu -65 62 29 2 852 597 268 169 7 chr5 35097446 35097724 -117439535 - MER2B DNA MER2_type 0 336 14 2 852 257 263 122 31 chr5 35098916 35099014 -117438245 - MLT2C2 LTR ERVL -5 554 448 2 852 690 295 104 39 chr5 35098994 35099301 -117437958 - MT2A LTR ERVL -139 394 68 2 852 565 272 9 0 chr5 35099296 35099410 -117437849 - RSINE1 SINE B4 -40 125 11 2 852 278 203 46 15 chr5 35099409 35099474 -117437785 + MTE2b LTR MaLR 313 379 0 2 852 1217 284 74 71 chr5 35099474 35100261 -117436998 - MTEb-int LTR MaLR -552 1028 159 2 852 715 275 12 23 chr5 35100269 35100440 -117436819 - B4A SINE B4 -43 249 81 2 852 320 193 0 0 chr5 35100455 35100512 -117436747 - B3 SINE B2 -13 203 147 2 852 458 248 139 8 chr5 35100824 35100946 -117436313 - B3A SINE B2 -56 142 5 2 852 671 267 52 19 chr5 35101024 35101234 -117436025 - MTEb-int LTR MaLR -1359 221 5 2 852 256 196 18 0 chr5 35101238 35101294 -117435965 - MTEb LTR MaLR 0 379 323 2 852 439 320 110 6 chr5 35101464 35101646 -117435613 + MTE-int LTR MaLR 935 1135 -445 2 852 521 263 40 19 chr5 35101899 35101920 -117435339 - ID_B1 SINE B4 0 224 183 2 852 551 158 49 10 chr5 35101920 35102022 -117435237 - B1F SINE Alu -26 123 18 2 852 521 263 40 19 chr5 35102022 35102087 -117435172 - ID_B1 SINE B4 0 182 43 2 852 405 298 139 14 chr5 35102048 35102266 -117434993 + MLT1B LTR MaLR 114 390 0 2 852 503 285 121 59 chr5 35102266 35102769 -117434490 - MLT1F2 LTR MaLR -14 666 3 2 852 983 138 28 0 chr5 35103095 35103240 -117434019 - B1_Mur4 SINE Alu -1 149 1 2 852 724 213 111 17 chr5 35103252 35103433 -117433826 - ID_B1 SINE B4 -2 222 25 2 852 320 236 20 101 chr5 35103373 35103472 -117433787 - B1_Mm SINE Alu -56 91 1 2 852 363 186 0 0 chr5 35104626 35104728 -117432531 + (CCG)n Simple_repeat Simple_repeat 2 103 0 2 852 22 56 0 0 chr5 35104764 35104800 -117432459 + GC_rich Low_complexity Low_complexity 1 36 0 2 852 24 0 0 0 chr5 35105972 35105996 -117431263 + AT_rich Low_complexity Low_complexity 1 24 0 2 852 543 138 97 35 chr5 35106111 35106224 -117431035 - PB1D9 SINE Alu 0 120 1 2 852 7859 50 27 5 chr5 35106233 35107171 -117430088 - RLTR13A2 LTR ERVK 0 958 1 2 852 393 22 0 0 chr5 35107269 35107315 -117429944 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 852 333 118 0 0 chr5 35107315 35107366 -117429893 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 852 618 269 183 32 chr5 35108031 35108468 -117428791 - L2a LINE L2 -2 3424 2922 2 852 189 0 0 0 chr5 35108733 35108754 -117428505 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 2 852 952 159 7 0 chr5 35108754 35108889 -117428370 - B1_Mus1 SINE Alu -11 137 2 2 852 455 266 99 23 chr5 35108912 35109043 -117428216 - B1F1 SINE Alu 0 149 9 2 852 649 314 106 46 chr5 35109091 35109328 -117427931 - B4A SINE B4 -1 291 41 2 852 976 253 175 11 chr5 35109329 35109797 -117427462 - L1M4 LINE L1 -949 5197 4653 2 852 467 217 234 0 chr5 35109820 35109993 -117427266 - MER58B DNA MER1_type -28 313 98 2 852 249 235 69 39 chr5 35110005 35110107 -117427152 - Lx8 LINE L1 -2 7471 7367 2 852 262 206 27 118 chr5 35110462 35110572 -117426687 - Lx8 LINE L1 -73 7400 7301 2 852 278 0 54 0 chr5 35110595 35110632 -117426627 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 852 695 110 28 25 chr5 35110636 35110771 -117426488 - B1_Mur3 SINE Alu -11 138 1 2 852 3009 232 66 75 chr5 35110771 35111087 -117426172 - Lx8 LINE L1 -361 7112 6807 2 852 920 143 43 0 chr5 35111087 35111227 -117426032 - B1_Mm SINE Alu -1 146 1 2 852 3032 232 66 75 chr5 35111227 35111759 -117425500 - Lx8 LINE L1 -667 6806 6272 2 852 1316 85 62 17 chr5 35111858 35111887 -117425372 - B2_Mm2 SINE B2 -7 188 154 2 852 405 102 0 0 chr5 35111887 35111946 -117425313 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 852 1316 85 62 17 chr5 35111946 35112095 -117425164 - B2_Mm2 SINE B2 -42 153 4 2 852 364 324 27 0 chr5 35112141 35112289 -117424970 + L1MD LINE L1 5609 5760 -482 2 852 1293 48 0 0 chr5 35112762 35112908 -117424351 - B1_Mus2 SINE Alu 0 147 2 2 852 5886 50 10 7 chr5 35113421 35114119 -117423140 - L1Md_F2 LINE L1 -2 6580 5881 2 852 731 152 118 22 chr5 35114171 35114306 -117422953 + B1_Mur2 SINE Alu 2 149 0 2 852 526 317 0 0 chr5 35114354 35114458 -117422801 + RSINE1 SINE B4 48 151 -14 2 852 287 279 41 0 chr5 35114885 35115007 -117422252 - L1M5 LINE L1 -937 5209 5083 2 852 4718 210 13 80 chr5 35115233 35116369 -117420890 - RMER1B Other Other 0 1066 7 2 852 1016 94 0 7 chr5 35116564 35116704 -117420555 - B1_Mur4 SINE Alu -5 145 7 2 852 278 369 27 0 chr5 35116753 35116864 -117420395 - PB1D7 SINE Alu -6 114 1 2 852 1360 95 11 6 chr5 35117256 35117436 -117419823 + B2_Mm2 SINE B2 1 181 -14 2 852 756 147 78 35 chr5 35117441 35117582 -117419677 + B1_Mur4 SINE Alu 4 150 0 2 852 266 125 0 20 chr5 35117787 35117836 -117419423 + (GGA)n Simple_repeat Simple_repeat 1 48 0 2 852 669 249 43 91 chr5 35117905 35118113 -117419146 - B3A SINE B2 0 198 1 2 852 1550 70 16 0 chr5 35118172 35118357 -117418902 + B2_Mm2 SINE B2 1 188 -7 2 852 269 165 212 88 chr5 35118755 35118868 -117418391 + B1F2 SINE Alu 2 128 -21 2 852 309 232 35 58 chr5 35119046 35119133 -117418126 - PB1D10 SINE Alu -1 116 32 2 852 3957 143 64 73 chr5 35119338 35120101 -117417158 - RMER6A LTR ERVK 0 756 1 2 852 231 227 0 70 chr5 35120541 35120612 -117416647 - RSINE1 SINE B4 0 165 100 2 852 262 113 0 0 chr5 35120621 35120680 -117416579 - MT2A LTR ERVL 0 533 475 2 852 965 189 72 68 chr5 35120680 35121068 -117416191 - ORR1C2 LTR MaLR 0 384 1 2 852 222 118 0 0 chr5 35121081 35121115 -117416144 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 852 1342 185 30 34 chr5 35121115 35121383 -117415876 - MT2A LTR ERVL -44 489 223 2 852 1058 180 0 25 chr5 35121396 35121595 -117415664 + URR1B DNA MER1_type 32 225 0 2 852 1207 142 66 0 chr5 35121596 35121808 -117415451 - MT2A LTR ERVL -304 229 4 2 852 517 296 102 55 chr5 35122627 35122902 -117414357 - B4A SINE B4 0 292 5 2 852 713 192 15 83 chr5 35123365 35123569 -117413690 - B2_Mm2 SINE B2 0 195 6 2 852 448 272 58 52 chr5 35123982 35124075 -117413184 - RSINE1 SINE B4 -1 164 69 2 852 3718 15 3 0 chr5 35124075 35124467 -117412792 + MTA_Mm LTR MaLR 1 393 -3 2 852 448 272 58 52 chr5 35124467 35124528 -117412731 - RSINE1 SINE B4 -97 68 9 2 852 419 140 426 52 chr5 35125483 35125619 -117411640 - B2_Mm2 SINE B2 -8 187 1 2 852 188 114 45 0 chr5 35125622 35125666 -117411593 + T-rich Low_complexity Low_complexity 2 47 0 2 852 662 200 70 14 chr5 35125696 35125838 -117411421 + B1_Mur4 SINE Alu 1 150 0 2 852 824 45 5 92 chr5 35125842 35126038 -117411221 + (GAA)n Simple_repeat Simple_repeat 2 180 0 2 852 198 0 0 0 chr5 35126092 35126114 -117411145 + (CAA)n Simple_repeat Simple_repeat 3 24 0 2 852 869 137 60 15 chr5 35126121 35126254 -117411005 + B1_Mus1 SINE Alu 2 140 -8 2 852 557 261 0 18 chr5 35126355 35126468 -117410791 + PB1D10 SINE Alu 2 112 -5 2 852 855 261 15 20 chr5 35126635 35126838 -117410421 - B3 SINE B2 0 216 15 2 852 616 250 8 0 chr5 35126850 35126974 -117410285 - ID_B1 SINE B4 -1 223 99 2 106 1385 206 62 17 chr5 35126979 35127339 -117409920 - MTC LTR MaLR -8 411 1 2 853 263 220 33 33 chr5 35127725 35127786 -117409473 + MLT1A LTR MaLR 1 61 -313 2 853 522 332 133 39 chr5 35127784 35128166 -117409093 - MER21B LTR ERV1 -113 750 333 2 853 520 228 62 39 chr5 35128606 35128784 -117408475 + L1MEc LINE L1 1662 1843 -4557 2 853 273 282 153 0 chr5 35128864 35128949 -117408310 - PB1D10 SINE Alu -13 104 7 2 853 987 250 51 4 chr5 35128987 35129240 -117408019 - RMER15 LTR ERVL -36 539 275 2 853 762 152 211 75 chr5 35129273 35129413 -117407846 - MTD LTR MaLR -1 418 241 2 853 1229 75 127 0 chr5 35129413 35129586 -117407673 + B2_Mm2 SINE B2 1 195 0 2 853 762 152 211 75 chr5 35129586 35129644 -117407615 - MTD LTR MaLR -179 240 193 2 853 7657 102 24 15 chr5 35129662 35131240 -117406019 - Lx LINE L1 0 6654 5056 2 853 275 188 47 0 chr5 35131247 35131311 -117405948 - RMER15 LTR ERVL -447 128 62 2 853 672 241 43 0 chr5 35131331 35131472 -117405787 - B1_Mur3 SINE Alu -1 148 2 2 853 291 308 44 80 chr5 35132038 35132051 -117405208 - B4 SINE B4 -86 206 98 2 853 582 200 0 0 chr5 35132051 35132151 -117405108 - PB1D9 SINE Alu -8 112 13 2 853 284 318 32 0 chr5 35132736 35132862 -117404397 - L1MC3 LINE L1 -173 7612 7483 2 853 360 0 0 0 chr5 35132864 35132904 -117404355 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 853 723 282 60 6 chr5 35134972 35135154 -117402105 + B3A SINE B2 1 192 -6 3 853 1021 281 40 90 chr5 35135258 35135657 -117401602 - MTE2a LTR MaLR 0 379 1 3 853 2123 128 95 6 chr5 35135847 35136184 -117401075 - ORR1B2 LTR MaLR 0 367 1 3 853 332 168 739 8 chr5 35137029 35137149 -117400110 - B3A SINE B2 -5 211 4 3 853 551 0 51 0 chr5 35137176 35137255 -117400004 + (TC)n Simple_repeat Simple_repeat 2 84 0 3 853 1853 120 89 38 chr5 35137255 35137601 -117399658 - RMER16 LTR ERVK -84 449 1 3 853 4835 102 10 10 chr5 35137601 35138284 -117398975 - RMER16-int LTR ERVK 0 5406 4724 3 853 341 288 0 0 chr5 35139122 35139195 -117398064 - ID4 SINE ID -9 74 2 3 853 225 268 14 40 chr5 35140440 35140514 -117396745 - Lx8 LINE L1 -357 7116 7045 3 853 808 323 17 17 chr5 35140613 35140852 -117396407 - B4 SINE B4 -12 280 42 3 853 24 0 0 0 chr5 35140923 35140947 -117396312 + AT_rich Low_complexity Low_complexity 1 24 0 3 853 348 172 0 0 chr5 35140987 35141045 -117396214 - Lx3C LINE L1 -5 6971 6914 3 853 3348 115 29 11 chr5 35141063 35141618 -117395641 + L1_Mur1 LINE L1 3001 3565 -2321 3 853 496 260 123 0 chr5 35141656 35141802 -117395457 - RSINE1 SINE B4 0 165 2 3 853 28 0 0 0 chr5 35142565 35142593 -117394666 + AT_rich Low_complexity Low_complexity 1 28 0 3 853 924 18 0 0 chr5 35142593 35142702 -117394557 - B2_Mm1t SINE B2 -84 109 1 3 853 934 240 71 0 chr5 35142721 35142917 -117394342 - B3 SINE B2 -6 210 1 3 853 192 184 0 0 chr5 35142938 35142987 -117394272 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 853 359 315 18 9 chr5 35142988 35143097 -117394162 - B4A SINE B4 0 292 183 3 853 1518 117 0 51 chr5 35143106 35143341 -117393918 - Lx2 LINE L1 0 6997 6775 3 853 3218 87 11 7 chr5 35143341 35143791 -117393468 - Lx2 LINE L1 -354 6643 6192 3 853 207 0 0 0 chr5 35143918 35143941 -117393318 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 853 246 62 0 0 chr5 35143995 35144027 -117393232 + (T)n Simple_repeat Simple_repeat 1 32 0 3 853 322 124 27 18 chr5 35144035 35144099 -117393160 - B2_Mm2 SINE B2 -102 114 47 3 853 1214 119 23 0 chr5 35144150 35144326 -117392933 - B2_Mm2 SINE B2 -14 181 2 3 853 313 211 67 0 chr5 35145274 35145364 -117391895 - L1_Mur3 LINE L1 -6917 795 700 3 853 309 229 0 0 chr5 35146079 35146143 -117391116 - RSINE1 SINE B4 -205 87 25 3 853 280 322 81 24 chr5 35147673 35147797 -117389462 + B1F SINE Alu 19 149 0 3 853 556 164 164 0 chr5 35148029 35148139 -117389120 - B3 SINE B2 -86 130 3 3 853 229 277 137 34 chr5 35148180 35148326 -117388933 + MER53 DNA hAT 1 161 -32 3 853 769 135 32 51 chr5 35148792 35148948 -117388311 - B2_Mm2 SINE B2 0 195 43 3 853 258 191 0 0 chr5 35148950 35148997 -117388262 + B1F SINE Alu 101 147 -2 3 853 268 266 88 0 chr5 35150744 35150832 -117386427 - MER58C DNA MER1_type 0 215 116 3 853 1227 68 0 0 chr5 35150832 35150979 -117386280 - B1_Mus1 SINE Alu 0 148 2 3 853 1076 90 33 12 chr5 35151151 35151336 -117385923 - B2_Mm2 SINE B2 0 198 7 3 853 351 261 30 0 chr5 35151694 35151790 -117385469 - PB1D10 SINE Alu -8 109 9 3 853 1736 174 213 9 chr5 35152245 35152593 -117384666 + MTD LTR MaLR 1 419 0 3 853 306 311 50 43 chr5 35153031 35153172 -117384087 - MTEb LTR MaLR -8 371 230 3 853 640 274 20 14 chr5 35153861 35154009 -117383250 - B1_Mur1 SINE Alu 0 149 1 3 853 239 169 0 48 chr5 35156359 35156421 -117380838 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 3 853 321 295 105 0 chr5 35156421 35156526 -117380733 - PB1D10 SINE Alu 0 117 2 3 853 966 258 135 30 chr5 35156633 35157040 -117380219 - L1MB3 LINE L1 -105 6078 5629 3 853 253 146 71 20 chr5 35157092 35157190 -117380069 + (TA)n Simple_repeat Simple_repeat 1 103 0 3 853 838 170 21 21 chr5 35157204 35157348 -117379911 - B1_Mur3 SINE Alu -4 145 2 3 853 25 0 0 0 chr5 35157352 35157377 -117379882 + AT_rich Low_complexity Low_complexity 1 25 0 3 853 562 214 203 17 chr5 35157377 35157554 -117379705 + B4A SINE B4 81 290 -2 3 853 386 93 0 0 chr5 35157636 35157690 -117379569 - ORR1B1 LTR MaLR -1 393 340 3 853 236 53 26 0 chr5 35157690 35157728 -117379531 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 853 1075 36 7 21 chr5 35157731 35157872 -117379387 - B1_Mm SINE Alu 0 147 9 3 853 649 113 32 80 chr5 35157865 35157899 -117379360 - ORR1B1 LTR MaLR -35 359 332 3 853 1349 77 66 0 chr5 35157899 35158081 -117379178 + B2_Mm2 SINE B2 2 195 0 3 853 649 141 45 86 chr5 35158081 35158203 -117379056 - ORR1B1 LTR MaLR -63 331 186 3 853 399 184 34 11 chr5 35158156 35158244 -117379015 + B1_Mur4 SINE Alu 46 135 -15 3 853 224 30 30 0 chr5 35158252 35158285 -117378974 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 3 853 4629 60 2 0 chr5 35158655 35159192 -117378067 - L1_Mus1 LINE L1 0 6567 6030 3 853 495 347 40 36 chr5 35159259 35159507 -117377752 - RMER15 LTR ERVL -4 571 323 3 853 842 206 7 7 chr5 35159987 35160134 -117377125 - B1_Mus1 SINE Alu 0 148 2 3 853 367 134 0 13 chr5 35160926 35160995 -117376264 - PB1D9 SINE Alu -1 149 63 3 853 30 0 0 24 chr5 35162210 35162239 -117375020 + AT_rich Low_complexity Low_complexity 1 29 0 3 853 1308 41 0 0 chr5 35162239 35162386 -117374873 - B1_Mus2 SINE Alu 0 147 1 3 853 30 0 0 24 chr5 35162386 35162397 -117374862 + AT_rich Low_complexity Low_complexity 1 11 0 3 853 892 228 0 85 chr5 35163505 35163521 -117373738 - B3A SINE B2 -5 193 182 3 853 246 62 0 0 chr5 35163521 35163553 -117373706 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 853 892 228 0 85 chr5 35163553 35163747 -117373512 - B3A SINE B2 -17 181 1 3 853 234 62 0 0 chr5 35163760 35163792 -117373467 + (T)n Simple_repeat Simple_repeat 1 32 0 3 853 21 57 0 0 chr5 35164726 35164761 -117372498 + AT_rich Low_complexity Low_complexity 1 35 0 3 853 452 326 57 6 chr5 35164780 35164956 -117372303 - B3A SINE B2 -13 185 1 3 853 521 212 232 5 chr5 35165122 35165307 -117371952 + B4 SINE B4 2 228 -64 3 853 898 213 61 5 chr5 35165930 35166128 -117371131 - B3 SINE B2 -5 211 3 3 853 653 259 13 33 chr5 35166783 35166935 -117370324 + B1_Mur2 SINE Alu 1 149 0 3 853 21 0 0 0 chr5 35166973 35166994 -117370265 + AT_rich Low_complexity Low_complexity 1 21 0 3 853 245 246 30 61 chr5 35168366 35168465 -117368794 - ID4 SINE ID -64 88 1 3 853 343 146 0 18 chr5 35168929 35168985 -117368274 - MurSatRep1 Unknown Unknown -1855 282 228 3 853 258 32 0 0 chr5 35169808 35169839 -117367420 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 853 198 0 0 0 chr5 35170122 35170144 -117367115 + (T)n Simple_repeat Simple_repeat 1 22 0 3 853 433 226 34 34 chr5 35170870 35170989 -117366270 + B1F SINE Alu 10 128 -21 3 853 270 0 0 0 chr5 35171449 35171479 -117365780 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 853 186 43 0 0 chr5 35172667 35172690 -117364569 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 3 853 364 288 27 0 chr5 35173131 35173242 -117364017 + MER3 DNA MER1_type 18 131 -78 3 853 910 115 28 14 chr5 35173544 35173685 -117363574 + B1_Mus1 SINE Alu 6 148 0 3 853 398 221 51 20 chr5 35174455 35174600 -117362659 - MLT1A LTR MaLR -173 201 34 3 853 21 0 0 0 chr5 35175193 35175214 -117362045 + AT_rich Low_complexity Low_complexity 1 21 0 3 853 1935 106 23 17 chr5 35176048 35176347 -117360912 + L1Md_F2 LINE L1 6282 6582 0 3 853 25 0 0 0 chr5 35177747 35177772 -117359487 + AT_rich Low_complexity Low_complexity 1 25 0 3 853 503 211 122 0 chr5 35177778 35177901 -117359358 - B1_Mur1 SINE Alu -7 142 5 3 853 2221 103 31 0 chr5 35178671 35178990 -117358269 - ORR1A4 LTR MaLR 0 329 1 3 853 917 174 155 0 chr5 35179162 35179369 -117357890 - RLTR42 LTR ERVK 0 239 1 3 853 3372 184 46 32 chr5 35179369 35179806 -117357453 - RLTR42-int LTR ERVK 0 5522 5089 3 853 1093 83 7 0 chr5 35179806 35179951 -117357308 + B1_Mus2 SINE Alu 1 146 -1 3 853 3372 169 96 29 chr5 35179951 35181057 -117356202 - RLTR42-int LTR ERVK -434 5088 3899 3 853 6286 149 85 103 chr5 35181059 35181472 -117355787 - L1_Mur3 LINE L1 -3043 2837 2361 3 853 974 30 37 7 chr5 35181472 35181608 -117355651 + B2_Mm2 SINE B2 52 191 -4 3 853 6286 149 85 103 chr5 35181608 35181866 -117355393 - L1_Mur3 LINE L1 -3043 2360 2060 3 853 342 0 0 0 chr5 35181866 35181904 -117355355 + (TGG)n Simple_repeat Simple_repeat 1 38 0 3 853 6286 158 62 116 chr5 35181904 35183123 -117354136 - L1_Mur3 LINE L1 -3821 2059 907 3 853 461 307 192 18 chr5 35183112 35183504 -117353755 - L1_Mur3 LINE L1 -7167 561 102 3 853 2164 161 143 161 chr5 35183508 35183736 -117353523 - RLTR42-int LTR ERVK -3114 2408 2188 3 853 828 181 28 0 chr5 35183736 35183880 -117353379 + B1_Mus1 SINE Alu 1 148 0 3 853 2164 161 143 161 chr5 35183880 35184546 -117352713 - RLTR42-int LTR ERVK -3335 2187 1530 3 853 303 167 0 0 chr5 35184759 35184825 -117352434 + GA-rich Low_complexity Low_complexity 1 66 0 3 853 889 193 76 5 chr5 35184827 35185025 -117352234 - RLTR42 LTR ERVK -27 212 1 3 853 611 280 41 29 chr5 35186038 35186281 -117350978 - MER2 DNA MER2_type -32 313 68 3 853 449 262 73 111 chr5 35186761 35187078 -117350181 - L1MEc LINE L1 -4909 1491 1178 3 853 730 238 54 0 chr5 35187078 35187263 -117349996 - B3A SINE B2 -3 195 1 3 853 449 262 73 111 chr5 35187263 35187468 -117349791 - L1MEc LINE L1 -5223 1177 989 3 853 423 0 0 0 chr5 35187491 35187538 -117349721 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 853 445 291 165 34 chr5 35187694 35188107 -117349152 - L1MEc LINE L1 -5863 537 71 3 853 182 259 73 18 chr5 35188177 35188232 -117349027 + L2c LINE L2 3290 3347 -40 3 853 238 284 51 11 chr5 35189101 35189195 -117348064 - ID4_ SINE ID -40 112 17 3 853 2591 176 59 27 chr5 35189222 35189781 -117347478 - RLTR20B3 LTR ERVK 0 577 1 3 853 436 178 114 7 chr5 35189781 35189933 -117347326 - MYSERV16_I-int LTR ERVK 0 2326 2217 3 853 231 204 45 0 chr5 35190773 35190817 -117346442 - ID4_ SINE ID -27 56 11 3 853 1032 115 14 0 chr5 35192002 35192150 -117345109 + B1_Mur4 SINE Alu 1 150 0 3 853 899 231 229 7 chr5 35192204 35192498 -117344761 + Lx8 LINE L1 6882 7249 -224 3 853 1177 180 143 25 chr5 35192875 35193154 -117344105 - ORR1D-int LTR MaLR -4 1366 1055 3 853 228 213 0 0 chr5 35193240 35193287 -117343972 + G-rich Low_complexity Low_complexity 1 47 0 4 853 321 224 69 23 chr5 35193304 35193391 -117343868 - PB1D9 SINE Alu -1 119 29 4 853 890 197 51 9 chr5 35193361 35193576 -117343683 + ORR1D-int LTR MaLR 263 486 -884 4 853 213 109 65 0 chr5 35195279 35195325 -117341934 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 4 853 616 204 76 55 chr5 35195896 35195908 -117341351 - B1_Mur3 SINE Alu 0 149 140 4 853 213 39 0 0 chr5 35195908 35195934 -117341325 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 853 616 204 76 55 chr5 35195934 35196066 -117341193 - B1_Mur3 SINE Alu -10 139 2 4 853 231 114 0 0 chr5 35196266 35196301 -117340958 + (T)n Simple_repeat Simple_repeat 1 35 0 4 853 246 254 96 15 chr5 35196317 35196453 -117340806 - Tigger13a DNA MER2_type -453 318 172 4 853 212 310 30 10 chr5 35197605 35197706 -117339553 - MIRb SINE MIR -92 176 74 4 853 8037 78 6 0 chr5 35197827 35199459 -117337800 - L1_Mus1 LINE L1 0 6567 4923 4 853 8762 51 22 1 chr5 35199457 35200537 -117336722 + L1Md_F2 LINE L1 4483 5585 -298 4 853 7190 70 44 6 chr5 35200539 35201299 -117335960 + L1Md_F2 LINE L1 5588 6352 -230 4 853 471 18 0 0 chr5 35201299 35201355 -117335904 + (CCA)n Simple_repeat Simple_repeat 1 56 0 4 853 7190 70 44 6 chr5 35201355 35201553 -117335706 + L1Md_F2 LINE L1 6353 6582 0 4 853 25156 99 34 1 chr5 35201561 35205887 -117331372 - L1_Mus1 LINE L1 -945 4938 470 4 853 181 317 199 38 chr5 35206407 35206643 -117330616 - L2a LINE L2 -131 3295 3022 4 853 226 286 60 0 chr5 35207082 35207166 -117330093 - MER5A DNA MER1_type -100 89 1 4 853 194 108 0 51 chr5 35207253 35207292 -117329967 + T-rich Low_complexity Low_complexity 4 40 0 4 853 554 286 76 0 chr5 35207681 35207866 -117329393 - B3 SINE B2 0 216 18 4 853 234 0 0 0 chr5 35208141 35208167 -117329092 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 853 3260 77 24 26 chr5 35208435 35208903 -117328356 - L1Md_F2 LINE L1 0 6582 6116 4 853 1365 241 111 76 chr5 35209496 35209752 -117327507 + L1MB2 LINE L1 5612 5839 -332 4 853 831 223 50 10 chr5 35209752 35209951 -117327308 + B3 SINE B2 1 207 -9 4 853 1365 241 111 76 chr5 35209951 35210233 -117327026 + L1MB2 LINE L1 5840 6169 -2 4 853 227 292 29 44 chr5 35210410 35210478 -117326781 + ID SINE ID 4 70 -154 4 853 374 235 12 0 chr5 35210504 35210589 -117326670 + ID_B1 SINE B4 136 221 -3 4 853 301 283 129 38 chr5 35211695 35211827 -117325432 - B4A SINE B4 -147 145 2 4 853 1110 54 0 81 chr5 35212694 35212855 -117324404 + B1_Mus1 SINE Alu 1 148 0 4 853 361 241 329 65 chr5 35212945 35213176 -117324083 + B4A SINE B4 1 292 0 4 853 21 0 0 0 chr5 35213968 35213989 -117323270 + AT_rich Low_complexity Low_complexity 1 21 0 4 853 24 0 0 0 chr5 35214694 35214718 -117322541 + AT_rich Low_complexity Low_complexity 1 24 0 4 853 298 201 162 27 chr5 35214719 35214867 -117322392 - Lx9 LINE L1 0 7644 7477 4 853 977 209 14 51 chr5 35215120 35215337 -117321922 - Lx9 LINE L1 -471 7173 6965 4 853 694 257 0 0 chr5 35215350 35215498 -117321761 + B1_Mur3 SINE Alu 1 148 -1 4 853 521 289 21 0 chr5 35215523 35215665 -117321594 + RSINE1 SINE B4 9 153 -12 4 853 706 239 12 30 chr5 35216618 35216782 -117320477 - RSINE1 SINE B4 -2 163 3 4 853 630 185 48 16 chr5 35216997 35217123 -117320136 - B3 SINE B2 -86 130 1 4 853 258 164 63 32 chr5 35217572 35217635 -117319624 - L1ME2z LINE L1 -383 6061 5997 4 853 386 272 0 24 chr5 35221071 35221154 -117316105 + ID4 SINE ID 3 83 0 4 853 2354 147 49 17 chr5 35222637 35222965 -117314294 - MTC LTR MaLR 0 421 82 4 853 1137 88 0 7 chr5 35222965 35223113 -117314146 - B1_Mus1 SINE Alu -1 147 1 4 853 2354 147 49 17 chr5 35223113 35223192 -117314067 - MTC LTR MaLR -340 81 1 4 853 1205 252 123 9 chr5 35223512 35223852 -117313407 - MTE2b LTR MaLR 0 379 1 4 853 607 227 48 28 chr5 35224479 35224624 -117312635 + B1_Mur1 SINE Alu 2 149 0 4 853 666 46 9 18 chr5 35224852 35224963 -117312296 + RMER17B LTR ERVK 351 460 -498 4 853 24 32 0 0 chr5 35224963 35224994 -117312265 + AT_rich Low_complexity Low_complexity 1 31 0 4 853 22 0 0 0 chr5 35225047 35225069 -117312190 + AT_rich Low_complexity Low_complexity 1 22 0 4 853 763 266 54 5 chr5 35225819 35226023 -117311236 - B4A SINE B4 -77 215 2 4 853 836 234 56 5 chr5 35226046 35226244 -117311015 - B3 SINE B2 -5 211 4 4 853 232 306 88 53 chr5 35226854 35226968 -117310291 + PB1 SINE Alu 5 122 -5 4 853 326 194 32 0 chr5 35227496 35227558 -117309701 - MIRc SINE MIR -116 152 89 4 853 193 325 92 58 chr5 35227881 35228054 -117309205 + L2 LINE L2 2458 2636 -783 4 853 375 262 0 12 chr5 35229771 35229856 -117307403 - PB1D10 SINE Alu -3 114 31 4 853 2284 122 6 3 chr5 35229952 35230280 -117306979 - ORR1A4 LTR MaLR 0 329 1 4 853 396 324 0 18 chr5 35230487 35230600 -117306659 + PB1D10 SINE Alu 1 111 -6 4 853 1127 76 0 20 chr5 35231012 35231023 -117306236 - B1_Mus2 SINE Alu 0 147 139 4 853 338 0 0 23 chr5 35231023 35231066 -117306193 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 4 853 1127 76 0 20 chr5 35231066 35231202 -117306057 - B1_Mus2 SINE Alu -9 138 3 4 853 1104 199 19 28 chr5 35231240 35231452 -117305807 - B3 SINE B2 0 216 7 4 853 435 136 321 0 chr5 35232448 35232529 -117304730 + PB1D9 SINE Alu 1 107 -13 4 853 757 85 244 8 chr5 35233202 35233321 -117303938 + B1_Mus1 SINE Alu 2 148 0 4 853 252 263 53 0 chr5 35234381 35234457 -117302802 + ID4_ SINE ID 2 81 -2 4 853 198 0 0 0 chr5 35234816 35234838 -117302421 + (CTG)n Simple_repeat Simple_repeat 2 23 0 4 853 285 146 0 0 chr5 35234857 35234905 -117302354 + (TCC)n Simple_repeat Simple_repeat 3 50 0 4 853 1157 62 14 0 chr5 35234982 35235128 -117302131 - B1_Mus1 SINE Alu 0 148 1 4 853 1873 147 78 48 chr5 35235135 35235492 -117301767 - ORR1C2 LTR MaLR 0 384 17 4 853 2118 202 30 2 chr5 35235708 35236114 -117301145 - MTD LTR MaLR -2 417 1 4 853 189 0 0 0 chr5 35236393 35236414 -117300845 + (T)n Simple_repeat Simple_repeat 1 21 0 4 853 420 274 16 86 chr5 35236495 35236623 -117300636 - RSINE1 SINE B4 -27 138 20 4 853 198 0 0 0 chr5 35241320 35241342 -117295917 + (T)n Simple_repeat Simple_repeat 1 22 0 4 853 288 301 20 27 chr5 35241610 35241760 -117295499 + (CA)n Simple_repeat Simple_repeat 2 150 0 4 853 243 224 0 0 chr5 35241785 35241861 -117295398 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 853 363 168 84 101 chr5 35242268 35242387 -117294872 + B3 SINE B2 1 117 -81 4 853 517 252 61 0 chr5 35243077 35243208 -117294051 - MLT1A1 LTR MaLR -2 406 268 4 853 575 262 167 35 chr5 35243581 35243755 -117293504 + B3A SINE B2 1 197 -1 4 853 474 280 44 33 chr5 35244491 35244672 -117292587 - RMER15 LTR ERVL -56 519 337 4 853 344 230 14 0 chr5 35244805 35244879 -117292380 - Lx8 LINE L1 -365 7108 7034 4 853 639 300 111 27 chr5 35245362 35245660 -117291599 - MER68 LTR ERVL -83 480 158 4 853 340 282 17 68 chr5 35246161 35246211 -117291048 + PB1D9 SINE Alu 4 48 -72 4 853 1122 70 0 27 chr5 35246211 35246359 -117290900 + B1_Mm SINE Alu 2 145 -2 4 853 1005 96 0 33 chr5 35246359 35246543 -117290716 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 4 853 340 282 17 68 chr5 35246543 35246609 -117290650 + PB1D9 SINE Alu 49 114 -6 4 853 190 161 0 0 chr5 35248839 35248870 -117288389 - L3 LINE CR1 -1628 2861 2831 4 853 1208 49 0 0 chr5 35250348 35250492 -117286767 + B1_Mus1 SINE Alu 5 148 0 4 853 492 48 0 0 chr5 35254545 35254608 -117282651 + (TCCC)n Simple_repeat Simple_repeat 3 65 0 4 853 21 0 0 0 chr5 35255107 35255128 -117282131 + AT_rich Low_complexity Low_complexity 1 21 0 4 853 987 68 98 0 chr5 35256153 35256286 -117280973 + B1_Mm SINE Alu 2 147 0 4 853 251 211 156 13 chr5 35258253 35258330 -117278929 - MIR3 SINE MIR -39 169 82 4 853 297 325 25 12 chr5 35258332 35258357 -117278902 + ID SINE ID 55 80 -144 4 106 354 206 229 42 chr5 35258357 35258453 -117278806 + B1_Mur1 SINE Alu 1 114 -35 4 854 181 247 120 27 chr5 35259567 35259642 -117277617 + L2b LINE L2 3274 3355 -20 4 854 399 316 13 38 chr5 35263450 35263608 -117273651 - MIRb SINE MIR -56 212 59 4 854 230 288 101 50 chr5 35264527 35264666 -117272593 + MIR SINE MIR 21 166 -96 4 854 297 0 0 0 chr5 35265464 35265497 -117271762 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 854 1498 264 31 17 chr5 35268930 35269285 -117267974 + ORR1D2 LTR MaLR 1 360 -10 4 854 957 333 94 75 chr5 35269470 35270362 -117266897 - Charlie1 DNA MER1_type -22 2759 1851 4 854 1352 67 39 0 chr5 35270799 35270977 -117266282 - B2_Mm2 SINE B2 -7 188 4 4 854 738 223 22 0 chr5 35271027 35271166 -117266093 + B1_Mur1 SINE Alu 8 149 0 4 854 328 314 135 7 chr5 35271178 35271319 -117265940 + HAL1-3A_ME LINE L1 2284 2442 -416 4 854 801 209 31 19 chr5 35272894 35273055 -117264204 - RSINE1 SINE B4 -1 164 2 4 854 300 342 97 13 chr5 35275388 35275542 -117261717 - L1M4 LINE L1 -1406 4740 4574 4 854 477 0 0 0 chr5 35275568 35275621 -117261638 + (TCCC)n Simple_repeat Simple_repeat 3 55 0 4 854 223 341 0 11 chr5 35275776 35275865 -117261394 + CT-rich Low_complexity Low_complexity 2 89 0 4 854 370 247 118 49 chr5 35275867 35275969 -117261290 - PB1D7 SINE Alu -5 115 7 4 854 543 16 0 0 chr5 35275973 35276037 -117261222 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 4 854 1130 73 0 0 chr5 35276037 35276173 -117261086 - B1_Mus1 SINE Alu -12 136 1 4 854 838 237 78 10 chr5 35276242 35276434 -117260825 - B3 SINE B2 -11 205 1 4 854 412 284 311 16 chr5 35276447 35276701 -117260558 - L1M4 LINE L1 -3128 3018 2690 4 854 1522 58 16 0 chr5 35276710 35276899 -117260360 + B2_Mm2 SINE B2 2 193 -2 4 854 693 167 0 0 chr5 35276915 35277041 -117260218 + GA-rich Low_complexity Low_complexity 1 126 0 4 854 591 217 96 32 chr5 35277104 35277309 -117259950 + RLTR41 LTR ERV1 264 499 -33 4 854 1217 134 39 35 chr5 35277309 35277541 -117259718 + RLTR9A LTR ERVK 136 368 0 5 854 818 228 36 52 chr5 35278185 35278379 -117258880 + B3A SINE B2 3 193 -5 5 854 418 344 123 24 chr5 35278388 35278850 -117258409 + Zaphod DNA Tip100 2412 2919 -1112 5 854 1095 39 0 0 chr5 35279053 35279182 -117258077 - B1_Mus2 SINE Alu -18 129 1 5 854 887 205 108 5 chr5 35279243 35279429 -117257830 + B3 SINE B2 1 205 -11 5 854 297 305 20 59 chr5 35279454 35279555 -117257704 + PB1D10 SINE Alu 2 98 -19 5 854 509 316 58 109 chr5 35279552 35279666 -117257593 + Zaphod DNA Tip100 3243 3348 -683 5 854 1169 82 0 0 chr5 35279666 35279812 -117257447 - B1_Mus2 SINE Alu 0 147 2 5 854 509 316 58 109 chr5 35279812 35280010 -117257249 + Zaphod DNA Tip100 3349 3539 -492 5 854 216 0 0 0 chr5 35280226 35280250 -117257009 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 854 229 314 113 91 chr5 35280261 35280492 -117256767 - ORR1C2 LTR MaLR -53 331 96 5 854 23 0 0 0 chr5 35282651 35282674 -117254585 + AT_rich Low_complexity Low_complexity 1 23 0 5 854 676 271 47 47 chr5 35282681 35282871 -117254388 - B3A SINE B2 0 198 9 5 854 2217 138 134 3 chr5 35283238 35283610 -117253649 + MTC LTR MaLR 1 421 0 5 854 612 264 64 7 chr5 35283865 35284006 -117253253 + B3 SINE B2 5 153 -63 5 854 275 104 21 0 chr5 35284006 35284054 -117253205 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 854 1366 74 6 11 chr5 35285342 35285520 -117251739 + B2_Mm1t SINE B2 2 178 -15 5 854 461 93 327 27 chr5 35285574 35285684 -117251575 + B2_Mm2 SINE B2 47 189 -6 5 854 387 0 0 0 chr5 35286135 35286178 -117251081 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 854 2053 272 71 21 chr5 35286185 35286865 -117250394 - Lx9 LINE L1 -195 7449 6736 5 854 240 111 0 0 chr5 35286868 35286913 -117250346 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 5 854 598 161 0 0 chr5 35286926 35287019 -117250240 + RMER10A LTR ERVL 1 93 -349 5 854 309 333 48 78 chr5 35287183 35287349 -117249910 - MLT-int LTR MaLR -621 1114 954 5 854 208 219 0 0 chr5 35287972 35288013 -117249246 + (CAT)n Simple_repeat Simple_repeat 2 42 0 5 854 250 280 40 13 chr5 35288015 35288091 -117249168 - ID_B1 SINE B4 -63 161 84 5 854 303 28 0 0 chr5 35288674 35288710 -117248549 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 854 662 218 89 45 chr5 35289334 35289497 -117247762 - L1M2 LINE L1 -511 5780 5608 5 854 1291 105 33 16 chr5 35289497 35289681 -117247578 - B2_Mm2 SINE B2 -7 188 2 5 854 662 218 89 45 chr5 35289681 35289719 -117247540 - L1M2 LINE L1 -684 5607 5570 5 854 225 281 49 0 chr5 35289742 35289824 -117247435 - L1MB3 LINE L1 -65 6118 6033 5 854 26 0 0 0 chr5 35292219 35292245 -117245014 + GC_rich Low_complexity Low_complexity 1 26 0 5 854 251 233 137 0 chr5 35293803 35293876 -117243383 - MLT1D LTR MaLR -38 467 385 5 854 213 231 45 30 chr5 35294336 35294403 -117242856 + PB1D10 SINE Alu 31 98 -19 5 854 352 348 111 25 chr5 35294422 35294584 -117242675 + B3A SINE B2 23 198 0 5 854 646 120 0 77 chr5 35294576 35294693 -117242566 + B1_Mur3 SINE Alu 42 149 0 5 854 252 0 0 0 chr5 35294717 35294745 -117242514 + (A)n Simple_repeat Simple_repeat 1 28 0 5 854 297 228 0 0 chr5 35295277 35295334 -117241925 - B3 SINE B2 -13 203 147 5 854 233 188 268 24 chr5 35295351 35295433 -117241826 - B2_Mm2 SINE B2 -93 102 1 5 854 991 280 89 62 chr5 35298335 35298704 -117238555 - MLT1F2 LTR MaLR -181 379 1 5 854 356 286 126 15 chr5 35299056 35299255 -117238004 - MLT1F2-int LTR MaLR -460 1029 809 5 854 647 251 79 109 chr5 35300155 35300459 -117236800 - ORR1E LTR MaLR -10 349 55 5 854 295 242 61 51 chr5 35300937 35301032 -117236227 - MLT1F2 LTR MaLR -304 104 10 5 854 268 297 14 0 chr5 35302491 35302565 -117234694 - Helitron3Na_Mam RC Helitron -326 160 86 5 854 792 156 34 41 chr5 35303323 35303470 -117233789 - B1_Mm SINE Alu 0 147 2 5 854 244 234 182 50 chr5 35304547 35304646 -117232613 - MLT1D LTR MaLR -50 455 344 5 854 308 345 57 33 chr5 35304679 35304889 -117232370 - MLT1D LTR MaLR -289 216 2 5 854 320 325 21 5 chr5 35305375 35305482 -117231777 - PB1D7 SINE Alu -25 124 21 5 854 820 269 75 36 chr5 35305504 35305785 -117231474 - B4A SINE B4 0 292 1 5 854 1141 273 41 88 chr5 35305912 35306259 -117231000 + MER68 LTR ERVL 143 462 -101 5 854 1341 85 5 26 chr5 35306259 35306452 -117230807 - B2_Mm1a SINE B2 -4 189 1 5 854 1141 273 41 88 chr5 35306452 35306546 -117230713 + MER68 LTR ERVL 463 563 0 5 854 473 320 86 30 chr5 35306768 35307000 -117230259 - Kanga2_a DNA Tc2 -560 328 84 5 854 333 295 95 76 chr5 35309793 35309951 -117227308 - RSINE1 SINE B4 0 165 5 5 854 382 185 32 122 chr5 35310013 35310136 -117227123 + PB1 SINE Alu 13 124 -3 5 854 312 91 0 0 chr5 35310418 35310462 -117226797 + (GGGAGA)n Simple_repeat Simple_repeat 5 48 0 5 854 258 311 41 82 chr5 35310464 35310562 -117226697 - RSINE1 SINE B4 -18 147 54 5 854 512 186 103 0 chr5 35310637 35310734 -117226525 + ID_B1 SINE B4 113 219 -5 5 854 1123 83 14 0 chr5 35311550 35311695 -117225564 + B1_Mus1 SINE Alu 2 148 0 5 854 210 143 0 0 chr5 35311698 35311747 -117225512 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 854 629 244 171 0 chr5 35311749 35311913 -117225346 - B3 SINE B2 -23 193 2 5 854 242 267 11 22 chr5 35312327 35312419 -117224840 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 854 619 199 126 8 chr5 35312440 35312567 -117224692 - B1_Mur4 SINE Alu -7 143 2 5 854 531 250 109 6 chr5 35312616 35312781 -117224478 - B3A SINE B2 -13 185 4 5 854 393 22 0 0 chr5 35312851 35312897 -117224362 + (TATG)n Simple_repeat Simple_repeat 4 49 0 5 854 296 250 39 26 chr5 35312903 35312981 -117224278 - RSINE1 SINE B4 -19 146 68 5 854 395 290 62 17 chr5 35313398 35313577 -117223682 - L1M5 LINE L1 -2301 3845 3659 5 854 274 354 0 0 chr5 35313628 35313691 -117223568 + polypyrimidine Low_complexity Low_complexity 25 87 0 5 854 946 132 14 20 chr5 35313691 35313838 -117223421 - B1_Mm SINE Alu -1 146 1 5 854 274 354 0 0 chr5 35313838 35313856 -117223403 + polypyrimidine Low_complexity Low_complexity 7 24 0 5 854 284 265 15 0 chr5 35313870 35313938 -117223321 - ID4 SINE ID -13 70 2 5 854 1202 158 24 0 chr5 35314024 35314233 -117223026 - Lx LINE L1 -12 6642 6429 5 854 464 236 125 66 chr5 35314582 35314637 -117222622 + B4 SINE B4 145 209 -83 5 854 1753 187 135 5 chr5 35314637 35315008 -117222251 - MTD LTR MaLR 0 419 1 5 854 464 248 104 55 chr5 35315008 35315110 -117222149 + B4 SINE B4 92 288 -4 5 854 555 229 64 10 chr5 35316026 35316240 -117221019 + L1MB3 LINE L1 5447 5673 -498 5 854 877 144 65 0 chr5 35316240 35316379 -117220880 + B1_Mus1 SINE Alu 1 148 0 5 854 806 253 50 1 chr5 35316427 35316686 -117220573 + L1MB3 LINE L1 5652 5936 -244 5 854 279 315 53 27 chr5 35316873 35317023 -117220236 - RMER15 LTR ERVL -95 480 327 5 854 867 236 6 6 chr5 35317124 35317303 -117219956 - B3A SINE B2 -18 180 2 5 854 302 150 117 0 chr5 35318268 35318328 -117218931 - L1MC2 LINE L1 -1 6343 6277 5 854 308 256 73 0 chr5 35319285 35319367 -117217892 - PB1D10 SINE Alu -17 100 13 5 854 1193 101 0 6 chr5 35320470 35320650 -117216609 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 5 854 460 70 112 0 chr5 35320666 35320754 -117216505 - B1_Mm SINE Alu 0 147 1 5 854 235 214 165 82 chr5 35320754 35320821 -117216438 - MT2B LTR ERVL -344 257 183 5 854 1118 211 101 149 chr5 35321010 35321222 -117216037 - MTE2a LTR MaLR -32 347 112 5 854 823 174 27 40 chr5 35321222 35321372 -117215887 + B1_Mus1 SINE Alu 1 148 0 5 854 1118 211 101 149 chr5 35321372 35321515 -117215744 - MTE2a LTR MaLR -268 111 9 5 854 278 305 0 28 chr5 35322088 35322196 -117215063 + L1M5 LINE L1 2883 2987 -3159 5 854 461 312 105 69 chr5 35322197 35322503 -117214756 + ORR1E LTR MaLR 1 317 -42 5 854 955 298 46 7 chr5 35322620 35322901 -117214358 - B4A SINE B4 0 292 1 5 854 321 266 201 92 chr5 35323008 35323356 -117213903 + L1M5 LINE L1 3603 3988 -2158 5 854 666 263 29 21 chr5 35323872 35324012 -117213247 + RSINE1 SINE B4 3 143 -22 5 854 306 0 0 0 chr5 35324013 35324047 -117213212 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 854 311 224 50 30 chr5 35324261 35324362 -117212897 + L1M5 LINE L1 4582 4684 -1462 5 854 270 179 36 0 chr5 35324374 35324430 -117212829 - L1MB4 LINE L1 0 6180 6123 5 854 270 301 13 95 chr5 35324430 35324588 -117212671 + ORR1E LTR MaLR 4 148 -211 5 854 238 206 29 29 chr5 35324667 35324737 -117212522 + CT-rich Low_complexity Low_complexity 5 74 0 5 854 291 211 12 134 chr5 35325519 35325601 -117211658 + ID4_ SINE ID 2 73 -10 5 854 225 65 0 0 chr5 35325616 35325647 -117211612 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 854 316 263 149 112 chr5 35325723 35325937 -117211322 - B4 SINE B4 -68 224 3 5 854 2656 126 43 0 chr5 35327366 35327762 -117209497 + MTC LTR MaLR 1 413 -8 5 854 781 223 31 13 chr5 35328195 35328354 -117208905 - RSINE1 SINE B4 -1 164 3 5 854 271 164 39 0 chr5 35328357 35328414 -117208845 - PB1D9 SINE Alu 0 149 69 5 854 3184 54 13 3 chr5 35330829 35331221 -117206038 + MTA_Mm LTR MaLR 1 396 0 5 854 227 221 53 26 chr5 35333614 35333710 -117203549 + MIRc SINE MIR 93 192 -84 5 854 225 254 17 0 chr5 35336819 35336878 -117200381 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 854 531 276 24 0 chr5 35336878 35337005 -117200254 - MTD LTR MaLR 0 419 290 5 854 226 282 12 0 chr5 35337062 35337147 -117200112 + L1MB1 LINE L1 5215 5300 -840 5 854 746 232 7 0 chr5 35337174 35337312 -117199947 + B1_Mur1 SINE Alu 1 139 -10 5 854 237 83 0 0 chr5 35337312 35337348 -117199911 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 5 854 357 308 148 33 chr5 35337576 35337903 -117199356 + L1MB1 LINE L1 5660 6025 -266 5 854 626 200 226 11 chr5 35338781 35338958 -117198301 - B3 SINE B2 0 216 2 5 854 901 196 89 40 chr5 35339826 35340028 -117197231 + B3 SINE B2 2 213 -3 5 854 189 0 0 0 chr5 35340084 35340105 -117197154 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 854 316 91 0 0 chr5 35340105 35340160 -117197099 - B2_Mm1a SINE B2 -12 181 127 6 854 1349 85 17 0 chr5 35340213 35340390 -117196869 - B2_Mm2 SINE B2 -14 181 2 6 854 25 21 0 59 chr5 35341885 35341936 -117195323 + AT_rich Low_complexity Low_complexity 1 48 0 6 854 269 231 15 15 chr5 35344211 35344277 -117192982 + ID4 SINE ID 2 67 -16 6 854 225 239 0 0 chr5 35344283 35344329 -117192930 + G-rich Low_complexity Low_complexity 5 50 0 6 854 213 276 0 65 chr5 35344863 35344925 -117192334 + RSINE1 SINE B4 93 150 -15 6 854 423 0 0 0 chr5 35344926 35344973 -117192286 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 854 546 16 0 0 chr5 35345007 35345070 -117192189 + (GGGA)n Simple_repeat Simple_repeat 3 65 0 6 854 298 165 25 0 chr5 35346761 35346840 -117190419 + CT-rich Low_complexity Low_complexity 4 84 0 6 854 1407 57 174 10 chr5 35349796 35349992 -117187267 - L1_Mus1 LINE L1 0 6567 6340 6 854 886 235 45 58 chr5 35350014 35350301 -117186958 + RLTR11B LTR ERVK 1 283 -162 6 854 948 189 10 13 chr5 35350369 35350568 -117186691 + RLTR11B LTR ERVK 285 512 -16 6 854 1432 222 102 29 chr5 35351246 35351589 -117185670 - ORR1D2 LTR MaLR 0 370 3 6 854 21 0 0 0 chr5 35353709 35353730 -117183529 + AT_rich Low_complexity Low_complexity 1 21 0 6 854 229 248 88 0 chr5 35353935 35354048 -117183211 - CR1_Mam LINE CR1 -557 1647 1525 6 854 216 86 0 0 chr5 35354881 35354916 -117182343 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 854 1179 51 0 0 chr5 35354916 35355054 -117182205 - B1_Mus2 SINE Alu -9 138 1 6 854 262 295 53 0 chr5 35355297 35355392 -117181867 + L1MC4 LINE L1 6778 6877 -1165 6 854 429 81 0 0 chr5 35358123 35358185 -117179074 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 854 471 267 8 8 chr5 35362460 35362577 -117174682 - PB1D10 SINE Alu 0 117 1 6 854 25 31 0 0 chr5 35362729 35362761 -117174498 + AT_rich Low_complexity Low_complexity 1 32 0 6 854 822 233 31 6 chr5 35364161 35364321 -117172938 + RSINE1 SINE B4 2 165 0 6 854 225 0 0 0 chr5 35364321 35364346 -117172913 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 854 320 306 73 20 chr5 35364410 35364560 -117172699 - Tigger5 DNA MER2_type -2139 267 110 6 854 254 233 88 55 chr5 35364668 35364759 -117172500 - PB1D10 SINE Alu -9 108 15 6 854 227 297 0 39 chr5 35364883 35364960 -117172299 - ORR1D-int LTR MaLR -1177 193 120 6 854 601 200 60 67 chr5 35370172 35370322 -117166937 - B1_Mur4 SINE Alu -1 149 1 6 854 539 230 35 0 chr5 35370325 35370438 -117166821 - PB1D10 SINE Alu 0 117 1 6 854 216 242 29 29 chr5 35374728 35374830 -117162429 + (CCCCAG)n Simple_repeat Simple_repeat 5 106 0 6 854 902 221 54 5 chr5 35376234 35376439 -117160820 - B3 SINE B2 -1 215 1 6 855 238 315 26 10 chr5 35390281 35390379 -117146880 - MIRc SINE MIR -99 177 74 6 855 349 328 45 15 chr5 35392478 35392611 -117144648 + MLT1B LTR MaLR 124 260 -130 6 855 519 272 99 0 chr5 35393127 35393289 -117143970 - MTEa LTR MaLR -34 345 168 6 855 883 239 14 28 chr5 35393303 35393514 -117143745 - B3 SINE B2 -1 215 8 6 855 667 262 36 30 chr5 35393509 35393567 -117143692 - MTEa LTR MaLR -207 172 116 6 855 1686 174 199 107 chr5 35393567 35394055 -117143204 - MT2A LTR ERVL 0 533 1 6 855 667 262 36 30 chr5 35394055 35394161 -117143098 - MTEa LTR MaLR -264 115 7 6 855 1466 229 73 34 chr5 35394277 35394662 -117142597 - MTD LTR MaLR -14 405 6 6 855 390 311 66 66 chr5 35394752 35394948 -117142311 - MLT1A LTR MaLR -178 196 1 6 855 248 329 23 99 chr5 35395297 35395469 -117141790 - MLT1A LTR MaLR 0 489 331 6 855 492 324 109 60 chr5 35395737 35396085 -117141174 - MLT1A0 LTR MaLR 0 365 1 6 855 244 336 67 9 chr5 35396374 35396479 -117140780 - ORR1E LTR MaLR -248 111 1 6 855 550 314 67 79 chr5 35396584 35396917 -117140342 - MLT1A LTR MaLR -49 341 1 6 855 29 0 0 0 chr5 35399445 35399474 -117137785 + GC_rich Low_complexity Low_complexity 1 29 0 6 855 194 59 0 105 chr5 35399648 35399705 -117137554 + G-rich Low_complexity Low_complexity 6 56 0 6 855 21 36 0 0 chr5 35399790 35399818 -117137441 + GC_rich Low_complexity Low_complexity 1 28 0 6 855 471 35 0 0 chr5 35401453 35401510 -117135749 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 855 220 280 97 0 chr5 35402380 35402473 -117134786 + MIRc SINE MIR 38 139 -129 6 855 389 229 133 30 chr5 35405744 35405820 -117131439 - ORR1D2 LTR MaLR -51 319 231 6 855 231 114 0 0 chr5 35405820 35405855 -117131404 + (CAGG)n Simple_repeat Simple_repeat 3 37 0 6 855 389 229 133 30 chr5 35405855 35405913 -117131346 - ORR1D2 LTR MaLR -140 230 171 6 855 260 296 102 0 chr5 35405922 35406010 -117131249 - ID_B1 SINE B4 -7 217 121 6 855 414 0 0 0 chr5 35407441 35407487 -117129772 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 6 855 1124 85 0 0 chr5 35407487 35407621 -117129638 - B1_Mus2 SINE Alu -11 136 3 6 855 393 318 9 0 chr5 35407768 35407875 -117129384 + RSINE1 SINE B4 58 165 0 6 855 234 0 0 0 chr5 35407883 35407909 -117129350 + (TCTCTG)n Simple_repeat Simple_repeat 5 30 0 6 855 297 0 0 0 chr5 35407909 35407941 -117129318 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 855 523 126 21 0 chr5 35407941 35408036 -117129223 + (ATG)n Simple_repeat Simple_repeat 2 98 0 6 855 537 16 0 0 chr5 35408521 35408583 -117128676 + (GGA)n Simple_repeat Simple_repeat 2 63 0 6 855 1534 151 0 0 chr5 35409660 35409885 -117127374 - URR1A DNA MER1_type -1 225 1 6 855 673 70 20 0 chr5 35409906 35410006 -117127253 + (TCCC)n Simple_repeat Simple_repeat 3 104 0 6 855 1464 45 6 6 chr5 35410007 35410184 -117127075 - B2_Mm2 SINE B2 -18 177 1 6 855 253 317 379 32 chr5 35412283 35412566 -117124693 - MLT1D LTR MaLR -33 434 54 6 855 281 259 172 65 chr5 35414943 35415158 -117122101 - MLT1G1 LTR MaLR -339 240 3 6 855 1084 148 108 0 chr5 35415414 35415617 -117121642 + URR1B DNA MER1_type 1 225 0 6 855 747 165 16 0 chr5 35420102 35420358 -117116901 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 6 855 788 139 23 0 chr5 35420380 35420552 -117116707 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 6 855 297 289 26 0 chr5 35420563 35420677 -117116582 + (TTCA)n Simple_repeat Simple_repeat 3 119 0 6 855 220 260 86 48 chr5 35422913 35423018 -117114241 - MIRb SINE MIR -58 210 102 6 855 194 136 0 22 chr5 35423034 35423079 -117114180 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 855 332 277 115 29 chr5 35423961 35424145 -117113114 + MIRc SINE MIR 17 215 -47 6 855 414 0 0 0 chr5 35430939 35430985 -117106274 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 855 502 339 30 85 chr5 35431083 35431354 -117105905 + B4A SINE B4 33 288 -4 6 855 363 78 0 0 chr5 35431383 35431434 -117105825 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 855 288 0 0 0 chr5 35431958 35431990 -117105269 + (T)n Simple_repeat Simple_repeat 1 32 0 6 855 1037 242 22 22 chr5 35431990 35432214 -117105045 - ID_B1 SINE B4 0 224 1 6 855 315 0 0 0 chr5 35433041 35433076 -117104183 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 855 348 265 16 89 chr5 35433329 35433453 -117103806 - PB1D10 SINE Alu 0 117 3 6 855 688 264 19 0 chr5 35433453 35433528 -117103731 - ID SINE ID -139 85 8 6 855 477 170 93 10 chr5 35433690 35433802 -117103457 - B1_Mus2 SINE Alu -2 118 5 6 855 276 303 66 0 chr5 35434178 35434254 -117103005 - RSINE1 SINE B4 -8 157 77 6 855 297 292 132 8 chr5 35435068 35435189 -117102070 - B4A SINE B4 -153 139 4 6 855 1676 36 0 0 chr5 35436925 35437118 -117100141 - B2_Mm1a SINE B2 0 193 1 6 855 186 270 12 86 chr5 35437414 35437495 -117099764 - L2b LINE L2 -237 3138 3064 6 855 1274 175 19 0 chr5 35439856 35440067 -117097192 - B3 SINE B2 0 216 2 6 855 327 327 0 10 chr5 35443083 35443185 -117094074 + PB1 SINE Alu 9 109 -18 6 855 24 0 0 0 chr5 35445582 35445606 -117091653 + AT_rich Low_complexity Low_complexity 1 24 0 6 855 214 306 81 0 chr5 35445629 35445691 -117091568 - ID4_ SINE ID 0 83 17 6 855 3126 46 8 0 chr5 35448959 35449352 -117087907 - MTA_Mm LTR MaLR 0 396 1 6 855 662 213 8 8 chr5 35449538 35449666 -117087593 - B1_Mus1 SINE Alu -19 129 2 6 855 397 221 8 133 chr5 35449565 35449685 -117087574 - MT2B LTR ERVL -344 257 153 6 855 362 234 76 67 chr5 35449746 35449865 -117087394 - B1_Mur2 SINE Alu -2 147 28 6 855 215 31 0 30 chr5 35449870 35449903 -117087356 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 855 1066 63 0 7 chr5 35449903 35450041 -117087218 - B1_Mus1 SINE Alu -6 142 5 6 855 248 286 113 9 chr5 35450041 35450147 -117087112 - L1MEc LINE L1 -6253 147 31 6 855 327 281 22 11 chr5 35450581 35450671 -117086588 + HAL1 LINE L1 844 934 -1573 6 855 441 283 16 8 chr5 35451060 35451188 -117086071 + RSINE1 SINE B4 8 136 -29 6 855 233 304 36 48 chr5 35451562 35451645 -117085614 + PB1D9 SINE Alu 17 98 -22 6 855 584 248 0 0 chr5 35451572 35451693 -117085566 + ID_B1 SINE B4 104 224 0 6 855 313 222 0 0 chr5 35451722 35451785 -117085474 + HAL1 LINE L1 1561 1623 -884 6 855 1232 90 22 0 chr5 35452043 35452221 -117085038 + B2_Mm2 SINE B2 2 183 -12 6 855 420 20 0 0 chr5 35452221 35452270 -117084989 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 6 855 205 250 21 0 chr5 35452320 35452368 -117084891 + GA-rich Low_complexity Low_complexity 3 51 0 6 855 252 86 0 0 chr5 35452823 35452858 -117084401 + (T)n Simple_repeat Simple_repeat 1 35 0 6 855 1155 41 7 0 chr5 35452858 35453004 -117084255 - B1_Mus1 SINE Alu 0 148 2 6 855 525 242 24 24 chr5 35453276 35453403 -117083856 + B1F SINE Alu 23 149 0 6 855 186 263 0 0 chr5 35453738 35453795 -117083464 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 7 855 891 254 9 0 chr5 35453834 35454185 -117083074 + (TGGA)n Simple_repeat Simple_repeat 1 354 0 7 855 531 0 0 0 chr5 35454189 35454248 -117083011 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 7 855 755 204 7 0 chr5 35454329 35454476 -117082783 + B1_Mur2 SINE Alu 2 149 0 7 855 594 244 172 11 chr5 35454535 35454682 -117082577 + B3 SINE B2 1 179 -37 7 855 647 65 22 0 chr5 35454682 35454774 -117082485 + (CATA)n Simple_repeat Simple_repeat 2 95 0 7 855 594 244 172 11 chr5 35454774 35454812 -117082447 + B3 SINE B2 180 216 0 7 855 696 45 0 0 chr5 35457089 35457177 -117080082 + (TC)n Simple_repeat Simple_repeat 2 89 0 7 855 26 30 0 0 chr5 35457295 35457328 -117079931 + AT_rich Low_complexity Low_complexity 1 33 0 7 855 720 191 29 0 chr5 35457333 35457469 -117079790 - B1_Mur2 SINE Alu -9 140 1 7 855 7737 24 5 4 chr5 35457484 35458426 -117078833 + L1Md_F3 LINE L1 5642 6584 0 7 855 234 294 77 19 chr5 35458706 35458810 -117078449 - L1M5 LINE L1 -1367 4779 4670 7 855 868 257 46 17 chr5 35459130 35459371 -117077888 - B4 SINE B4 -41 251 4 7 855 251 0 0 56 chr5 35459443 35459479 -117077780 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 7 855 1085 82 0 14 chr5 35459484 35459632 -117077627 - B1_Mus1 SINE Alu -1 147 2 7 855 1190 69 92 0 chr5 35459748 35459922 -117077337 - B2_Mm2 SINE B2 -2 193 4 7 855 294 315 35 29 chr5 35460348 35460518 -117076741 - L1M5 LINE L1 -2088 4058 3888 7 855 677 163 41 0 chr5 35460734 35460857 -117076402 - B3 SINE B2 -88 128 1 7 855 396 0 0 0 chr5 35461940 35461984 -117075275 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 855 409 275 99 17 chr5 35462042 35462223 -117075036 + B3A SINE B2 2 197 -1 7 855 304 243 43 0 chr5 35463152 35463222 -117074037 - ID4 SINE ID -9 74 2 7 855 601 279 86 5 chr5 35463661 35463870 -117073389 - MLT1C LTR MaLR -224 243 18 7 855 291 330 47 26 chr5 35463899 35464092 -117073167 - HAL1b LINE L1 -871 1138 942 7 855 23 54 0 0 chr5 35464172 35464209 -117073050 + AT_rich Low_complexity Low_complexity 1 37 0 7 855 875 185 132 36 chr5 35464276 35464495 -117072764 - RLTR14 LTR ERV1 -139 243 4 7 855 702 183 0 0 chr5 35464738 35464858 -117072401 - B3A SINE B2 -78 120 1 7 855 318 235 0 0 chr5 35464872 35464940 -117072319 - MTE-int LTR MaLR -130 1450 1383 7 855 990 218 33 44 chr5 35464948 35465222 -117072037 + MTD LTR MaLR 1 271 -148 7 855 240 241 93 0 chr5 35465273 35465327 -117071932 - MTE-int LTR MaLR -227 1353 1295 7 855 247 302 68 23 chr5 35465451 35465539 -117071720 - MTE-int LTR MaLR -447 811 720 7 855 280 311 78 0 chr5 35465567 35465670 -117071589 - ORR1E-int LTR MaLR -606 974 864 7 855 276 100 0 0 chr5 35465670 35465710 -117071549 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 7 855 298 231 63 13 chr5 35465723 35465802 -117071457 - ORR1E-int LTR MaLR -1188 392 310 7 855 1165 55 0 0 chr5 35465802 35465947 -117071312 + B1_Mm SINE Alu 2 146 -1 7 855 188 61 61 0 chr5 35465948 35465981 -117071278 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 855 734 196 169 23 chr5 35466026 35466203 -117071056 - B3 SINE B2 -6 210 8 7 855 618 265 59 32 chr5 35466205 35466392 -117070867 - ORR1E-int LTR MaLR -1387 193 2 7 855 337 230 0 13 chr5 35466392 35466463 -117070796 - ORR1E LTR MaLR -15 364 295 7 855 237 159 0 0 chr5 35466635 35466679 -117070580 + GA-rich Low_complexity Low_complexity 3 46 0 7 855 394 311 10 0 chr5 35466691 35466794 -117070465 - ORR1E LTR MaLR -254 105 2 7 855 346 283 98 83 chr5 35467094 35467298 -117069961 - RMER2 LTR ERV1 -27 540 334 7 855 280 167 65 32 chr5 35467949 35468011 -117069248 - ORR1D2 LTR MaLR -302 68 5 7 855 231 271 47 39 chr5 35468108 35468235 -117069024 - L1MEd LINE L1 -5052 1067 940 7 855 294 73 0 0 chr5 35469241 35469282 -117067977 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 855 325 278 44 53 chr5 35469425 35469485 -117067774 - MER2 DNA MER2_type -32 313 256 7 855 3553 113 42 60 chr5 35469485 35470097 -117067162 + MT2B LTR ERVL 1 601 0 7 855 325 278 44 53 chr5 35470097 35470150 -117067109 - MER2 DNA MER2_type -90 255 201 7 855 281 203 0 26 chr5 35470337 35470413 -117066846 + RLTR15 LTR ERVK 48 121 -238 7 855 939 40 5 60 chr5 35470414 35470438 -117066821 + (GAA)n Simple_repeat Simple_repeat 1 24 0 7 855 1464 23 0 0 chr5 35470438 35470610 -117066649 + (GGGAGA)n Simple_repeat Simple_repeat 2 173 0 7 855 939 40 5 60 chr5 35470610 35470770 -117066489 + (GAA)n Simple_repeat Simple_repeat 1 151 0 7 855 31 44 0 0 chr5 35470892 35470937 -117066322 + AT_rich Low_complexity Low_complexity 1 45 0 7 855 1439 126 114 0 chr5 35471094 35471349 -117065910 + ORR1B1 LTR MaLR 1 284 -110 7 855 225 316 0 30 chr5 35472226 35472327 -117064932 + GA-rich Low_complexity Low_complexity 4 101 0 7 855 244 226 32 16 chr5 35473568 35473631 -117063628 + ORR1B1 LTR MaLR 279 342 -37 7 855 362 286 25 125 chr5 35473692 35473852 -117063407 - B4A SINE B4 -140 152 9 7 855 900 233 76 0 chr5 35475156 35475366 -117061893 - MTD LTR MaLR -87 332 107 7 855 3647 83 4 2 chr5 35475366 35475874 -117061385 + L1Md_F2 LINE L1 6074 6582 0 7 855 488 163 0 0 chr5 35475960 35476046 -117061213 - MTD LTR MaLR -300 119 34 7 855 180 345 14 21 chr5 35476497 35476642 -117060617 + L2c LINE L2 3023 3166 -221 7 855 422 345 18 0 chr5 35477466 35477631 -117059628 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 7 855 393 22 0 0 chr5 35477705 35477751 -117059508 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 7 855 480 247 199 7 chr5 35478243 35478394 -117058865 + B3A SINE B2 3 182 -16 7 855 245 261 0 28 chr5 35479350 35479421 -117057838 + (TG)n Simple_repeat Simple_repeat 1 69 0 7 855 541 268 123 68 chr5 35479442 35479494 -117057765 - B4 SINE B4 -16 276 225 7 855 189 74 0 0 chr5 35479494 35479521 -117057738 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 855 541 268 123 68 chr5 35479521 35479720 -117057539 - B4 SINE B4 -68 224 13 7 855 366 23 0 0 chr5 35479758 35479801 -117057458 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 855 207 357 0 34 chr5 35479851 35479999 -117057260 + (CATATA)n Simple_repeat Simple_repeat 3 145 0 7 855 237 316 62 21 chr5 35480078 35480175 -117057084 - RMER12 LTR ERVK -479 843 743 7 855 388 364 7 0 chr5 35480222 35480373 -117056886 - L1M5 LINE L1 -700 5540 5389 7 855 185 132 0 26 chr5 35480425 35480464 -117056795 + (TGG)n Simple_repeat Simple_repeat 1 38 0 7 855 387 0 0 0 chr5 35480562 35480605 -117056654 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 855 238 326 23 0 chr5 35481818 35481904 -117055355 - Lx8 LINE L1 -201 7272 7185 7 855 611 288 78 7 chr5 35482233 35482516 -117054743 - L1MCa LINE L1 -4962 1546 1244 7 855 576 300 97 9 chr5 35483001 35483342 -117053917 - RMER15-int LTR ERVL -4370 629 259 7 855 403 326 0 30 chr5 35483556 35483689 -117053570 - RMER15 LTR ERVL -41 534 406 7 855 239 333 26 0 chr5 35484088 35484202 -117053057 - L1MCa LINE L1 -5265 1152 1036 7 855 850 57 16 16 chr5 35485399 35485524 -117051735 + (TATG)n Simple_repeat Simple_repeat 2 126 0 7 855 227 304 0 0 chr5 35485540 35485596 -117051663 - B1F2 SINE Alu -92 57 2 7 855 185 119 24 0 chr5 35485966 35486008 -117051251 + (CTGGGG)n Simple_repeat Simple_repeat 4 46 0 7 855 21 0 0 0 chr5 35486077 35486098 -117051161 + AT_rich Low_complexity Low_complexity 1 21 0 7 855 225 65 0 0 chr5 35486825 35486856 -117050403 + (CTCA)n Simple_repeat Simple_repeat 2 32 0 7 855 701 204 11 0 chr5 35486871 35487047 -117050212 + (TTCA)n Simple_repeat Simple_repeat 3 180 0 7 855 224 200 17 0 chr5 35487058 35487118 -117050141 + (TTCA)n Simple_repeat Simple_repeat 1 61 0 7 855 747 214 4 0 chr5 35488821 35489279 -117047980 + (TGAG)n Simple_repeat Simple_repeat 1 460 0 7 855 235 293 29 48 chr5 35490243 35490347 -117046912 + MER63B DNA AcHobo 335 436 0 7 855 243 0 0 0 chr5 35490418 35490445 -117046814 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 7 855 441 0 0 0 chr5 35490510 35490559 -117046700 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 855 256 317 10 0 chr5 35490574 35490678 -117046581 + (CA)n Simple_repeat Simple_repeat 1 105 0 7 855 208 296 30 20 chr5 35490928 35491028 -117046231 + (TCCA)n Simple_repeat Simple_repeat 4 104 0 7 855 1945 211 26 17 chr5 35491494 35491909 -117045350 + MTD LTR MaLR 1 419 0 7 855 2380 139 2 39 chr5 35493157 35493570 -117043689 + MTB_Mm LTR MaLR 2 399 -8 7 855 985 208 0 10 chr5 35494118 35494312 -117042947 - B3A SINE B2 0 198 7 7 855 213 65 0 0 chr5 35494365 35494396 -117042863 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 855 1095 56 7 0 chr5 35494396 35494531 -117042728 - B1_Mus2 SINE Alu -8 139 4 7 855 267 164 224 0 chr5 35494538 35494605 -117042654 - B1_Mur3 SINE Alu -2 147 66 7 855 582 15 0 0 chr5 35495373 35495440 -117041819 + (TC)n Simple_repeat Simple_repeat 2 68 0 7 855 198 143 0 0 chr5 35496496 35496531 -117040728 + (TCCC)n Simple_repeat Simple_repeat 2 36 0 7 855 445 216 10 19 chr5 35496548 35496652 -117040607 - PB1D10 SINE Alu -14 103 1 7 855 2557 132 24 26 chr5 35497187 35497639 -117039620 + RLTR20B2 LTR ERVK 1 451 -109 7 855 419 0 20 0 chr5 35497643 35497694 -117039565 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 855 910 211 15 15 chr5 35499372 35499569 -117037690 + B3 SINE B2 20 216 0 7 855 252 309 0 0 chr5 35501621 35501689 -117035570 + G-rich Low_complexity Low_complexity 1 68 0 1 855 430 308 164 16 chr5 35501857 35502167 -117035092 + MLT1C LTR MaLR 71 426 -41 2 855 355 295 93 55 chr5 35503832 35504015 -117033244 - MER21B LTR ERV1 -224 639 450 3 855 774 294 91 37 chr5 35504033 35504386 -117032873 - MER21B LTR ERV1 -491 372 1 3 855 259 196 32 89 chr5 35504499 35504689 -117032570 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 855 450 0 0 0 chr5 35505591 35505641 -117031618 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 855 298 331 132 30 chr5 35506406 35506702 -117030557 + L1M4 LINE L1 2713 3038 -3108 6 855 779 265 5 39 chr5 35506703 35506907 -117030352 + B3A SINE B2 1 197 -1 7 855 432 239 35 60 chr5 35506921 35507037 -117030222 + RSINE1 SINE B4 50 162 -3 8 855 27 49 0 0 chr5 35507048 35507089 -117030170 + AT_rich Low_complexity Low_complexity 1 41 0 9 855 481 332 126 16 chr5 35508586 35508904 -117028355 + ORR1E LTR MaLR 6 358 -1 1 855 426 85 0 0 chr5 35509230 35509289 -117027970 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 855 206 241 0 33 chr5 35509350 35509410 -117027849 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 855 220 200 0 44 chr5 35509416 35509484 -117027775 + (TCTCTG)n Simple_repeat Simple_repeat 6 70 0 1 855 561 30 0 0 chr5 35509588 35509655 -117027604 + (TCC)n Simple_repeat Simple_repeat 1 67 0 1 855 2511 186 242 5 chr5 35510301 35510897 -117026362 + RMER19A LTR ERVK 1 737 0 1 855 226 254 0 83 chr5 35512086 35512146 -117025113 - PB1D10 SINE Alu -53 64 10 1 855 513 0 0 0 chr5 35512260 35512317 -117024942 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 855 790 229 24 38 chr5 35513764 35513977 -117023282 - B3 SINE B2 -6 210 1 1 855 2932 268 114 43 chr5 35514157 35515031 -117022228 - Lx8 LINE L1 -327 7146 6177 1 855 744 223 65 49 chr5 35515031 35515215 -117022044 - B3A SINE B2 -11 187 1 1 855 2932 268 114 43 chr5 35515215 35515398 -117021861 - Lx8 LINE L1 -1297 6176 6014 1 855 416 229 0 0 chr5 35515451 35515534 -117021725 - B4A SINE B4 -208 84 2 2 855 224 109 85 21 chr5 35515848 35515874 -117021385 - B1_Mm SINE Alu -13 134 106 2 855 1682 163 77 14 chr5 35515874 35516223 -117021036 - ORR1C1 LTR MaLR 0 378 8 2 855 647 140 3 1 chr5 35516227 35516339 -117020920 - B1_Mus1 SINE Alu -35 113 1 2 855 848 223 2 40 chr5 35516361 35516583 -117020676 - B3A SINE B2 -8 208 1 2 855 428 283 19 9 chr5 35517506 35517613 -117019646 + PB1D10 SINE Alu 1 108 -9 2 855 327 301 67 15 chr5 35517801 35517936 -117019323 + ORR1E LTR MaLR 4 145 -214 2 855 1997 83 0 19 chr5 35517936 35518207 -117019052 - L1Md_F2 LINE L1 -12 6570 6305 2 855 3621 47 0 0 chr5 35518208 35518660 -117018599 + L1Md_F2 LINE L1 5852 6303 -279 2 855 303 252 29 39 chr5 35518804 35518907 -117018352 + ORR1E LTR MaLR 278 379 0 2 855 180 0 0 0 chr5 35518976 35518996 -117018263 + (T)n Simple_repeat Simple_repeat 1 20 0 2 855 192 250 76 38 chr5 35520192 35520271 -117016988 + MIRc SINE MIR 111 192 -76 2 856 366 80 0 0 chr5 35522417 35522467 -117014792 + (CCCCCT)n Simple_repeat Simple_repeat 2 51 0 3 856 822 247 44 116 chr5 35522488 35522781 -117014478 - B4A SINE B4 -20 272 1 3 856 314 316 101 39 chr5 35523064 35523242 -117014017 - ORR1E LTR MaLR -170 189 1 3 856 567 29 0 0 chr5 35523308 35523377 -117013882 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 856 1271 81 0 0 chr5 35523379 35523551 -117013708 - B2_Mm2 SINE B2 -22 173 2 3 856 784 249 24 43 chr5 35523574 35523784 -117013475 - B3 SINE B2 -9 207 2 3 856 249 224 0 0 chr5 35523819 35523877 -117013382 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 3 856 455 318 6 22 chr5 35523917 35524097 -117013162 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 3 856 635 220 6 0 chr5 35524116 35524289 -117012970 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 3 856 203 287 10 31 chr5 35524297 35524394 -117012865 + (TTCA)n Simple_repeat Simple_repeat 4 98 0 3 856 300 355 0 0 chr5 35524468 35524561 -117012698 + MER96 DNA hAT 1 93 -82 3 856 285 327 59 0 chr5 35524805 35524906 -117012353 - MER58B DNA MER1_type -31 310 204 3 856 432 0 0 0 chr5 35524923 35524971 -117012288 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 856 1932 179 117 5 chr5 35525292 35525669 -117011590 - MTD LTR MaLR 0 419 1 4 856 585 195 194 33 chr5 35527642 35527822 -117009437 - Lx7 LINE L1 -610 7086 6878 4 856 387 0 0 0 chr5 35528495 35528538 -117008721 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 4 856 261 0 0 0 chr5 35529128 35529157 -117008102 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 856 309 26 0 0 chr5 35529157 35529194 -117008065 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 856 330 282 104 28 chr5 35529683 35529704 -117007555 + CYRA11_Mm Unknown Y-chromosome 150 184 -433 4 856 1081 137 77 0 chr5 35529704 35529887 -117007372 - URR1B DNA MER1_type 0 225 29 4 856 1129 250 55 41 chr5 35529883 35530246 -117007013 + MTD LTR MaLR 37 404 -15 4 856 256 346 39 0 chr5 35532261 35532339 -117004920 - MER2 DNA MER2_type -5 340 260 4 856 793 145 87 0 chr5 35532343 35532481 -117004778 + B1_Mur4 SINE Alu 1 150 0 5 856 191 32 65 0 chr5 35532504 35532535 -117004724 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 5 856 273 367 92 0 chr5 35532610 35532730 -117004529 - MER2 DNA MER2_type -214 131 1 4 856 438 283 130 12 chr5 35532735 35532896 -117004363 + L1MA7 LINE L1 6108 6287 -4 5 856 180 0 0 0 chr5 35532900 35532920 -117004339 + (A)n Simple_repeat Simple_repeat 1 20 0 5 856 386 273 118 13 chr5 35533022 35533174 -117004085 + MLT1C LTR MaLR 81 248 -219 5 856 180 152 0 0 chr5 35533270 35533303 -117003956 + CT-rich Low_complexity Low_complexity 2 34 0 5 856 208 229 0 20 chr5 35533320 35533369 -117003890 + CT-rich Low_complexity Low_complexity 4 51 0 5 856 381 184 40 0 chr5 35533374 35533450 -117003809 - ID_B1 SINE B4 0 224 146 5 856 353 257 139 0 chr5 35534107 35534208 -117003051 - PB1D7 SINE Alu -5 115 1 5 856 834 196 31 22 chr5 35536325 35536647 -117000612 + (TCCA)n Simple_repeat Simple_repeat 1 325 0 5 856 447 68 0 0 chr5 35536723 35536782 -117000477 + (TCC)n Simple_repeat Simple_repeat 2 60 0 5 856 755 110 165 0 chr5 35537780 35537907 -116999352 - B1_Mur2 SINE Alu -1 148 1 6 856 636 184 0 27 chr5 35539838 35539950 -116997309 - PB1D10 SINE Alu -5 112 4 6 856 417 20 0 0 chr5 35540562 35540612 -116996647 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 856 200 204 0 22 chr5 35540737 35540782 -116996477 + MIRc SINE MIR 112 155 -113 6 856 198 230 75 65 chr5 35542104 35542197 -116995062 + MIR SINE MIR 1 94 -168 6 856 427 223 8 104 chr5 35542315 35542336 -116994923 + MT2B LTR ERVL 148 156 -445 6 856 556 258 24 0 chr5 35542336 35542460 -116994799 + B1_Mur1 SINE Alu 1 127 -22 6 856 2184 152 125 5 chr5 35542594 35542970 -116994289 + MTC LTR MaLR 1 421 0 6 856 321 26 0 0 chr5 35543019 35543057 -116994202 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 6 856 365 256 12 0 chr5 35543086 35543172 -116994087 - PB1D10 SINE Alu -3 114 28 6 856 288 0 0 0 chr5 35543175 35543207 -116994052 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 856 724 98 34 28 chr5 35544443 35544621 -116992638 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 856 190 91 71 18 chr5 35544669 35544725 -116992534 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 856 3608 193 27 187 chr5 35545811 35547015 -116990244 - RMER1B Other Other -9 1057 47 7 856 479 246 226 13 chr5 35547075 35547314 -116989945 - L1MC3 LINE L1 -19 7766 7477 7 856 1620 222 52 8 chr5 35547565 35547928 -116989331 - MTEa LTR MaLR 0 379 1 7 856 581 212 136 76 chr5 35547960 35548144 -116989115 - B3A SINE B2 -3 195 1 7 856 468 0 0 0 chr5 35548148 35548200 -116989059 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 856 261 0 0 0 chr5 35549785 35549814 -116987445 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 856 225 0 0 0 chr5 35549814 35549838 -116987421 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 856 853 251 105 12 chr5 35550343 35550601 -116986658 + B4A SINE B4 1 282 -10 7 856 276 246 16 0 chr5 35551040 35551101 -116986158 - B4 SINE B4 -129 163 102 8 856 227 250 50 50 chr5 35551106 35551186 -116986073 - B3A SINE B2 -116 82 3 8 856 371 157 19 29 chr5 35552417 35552498 -116984761 + CT-rich Low_complexity Low_complexity 23 105 0 8 856 1172 61 0 7 chr5 35552498 35552647 -116984612 - B1_Mus1 SINE Alu 0 148 1 8 856 371 157 19 29 chr5 35552647 35552670 -116984589 + polypyrimidine Low_complexity Low_complexity 2 22 0 8 856 787 175 287 6 chr5 35553141 35553308 -116983951 + B3 SINE B2 1 214 -2 8 856 645 161 9 9 chr5 35553309 35553422 -116983837 + B1_Mur1 SINE Alu 18 130 -19 8 856 212 266 12 25 chr5 35553499 35553580 -116983679 - L2a LINE L2 -15 3411 3332 8 856 30 59 0 0 chr5 35553691 35553742 -116983517 + AT_rich Low_complexity Low_complexity 1 51 0 8 856 622 213 74 0 chr5 35553777 35553899 -116983360 - B1_Mm SINE Alu -16 131 1 8 856 587 246 22 55 chr5 35553900 35554081 -116983178 + B4 SINE B4 68 242 -50 9 856 228 304 0 0 chr5 35554226 35554341 -116982918 + (CAGG)n Simple_repeat Simple_repeat 2 116 0 9 856 206 197 0 27 chr5 35554458 35554531 -116982728 + (AACTG)n Simple_repeat Simple_repeat 2 72 0 9 856 184 258 65 0 chr5 35554885 35554947 -116982312 - L3 LINE CR1 -104 4385 4320 9 856 974 250 171 6 chr5 35555786 35555837 -116981422 - MTE2b LTR MaLR -4 375 315 9 856 542 15 0 15 chr5 35555837 35555905 -116981354 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 9 856 974 250 171 6 chr5 35555905 35556175 -116981084 - MTE2b LTR MaLR -65 314 2 9 856 619 139 0 17 chr5 35558883 35559000 -116978259 + CT-rich Low_complexity Low_complexity 4 118 0 9 856 233 247 11 76 chr5 35560230 35560322 -116976937 + MTEa LTR MaLR 67 152 -207 9 856 347 297 78 8 chr5 35560368 35560497 -116976762 + MTEa LTR MaLR 241 378 -1 9 856 323 286 16 139 chr5 35560486 35560608 -116976651 + MTEa-int LTR MaLR 2 108 -1472 9 856 819 263 70 4 chr5 35560611 35560855 -116976404 + MTEa-int LTR MaLR 235 494 -1086 9 856 616 260 77 39 chr5 35561000 35561051 -116976208 + B3 SINE B2 1 53 -163 9 856 1944 68 11 0 chr5 35561051 35561341 -116975918 + L1_Mus1 LINE L1 6296 6567 0 9 856 616 260 77 39 chr5 35561341 35561426 -116975833 + B3 SINE B2 54 149 -67 9 856 450 0 0 0 chr5 35561426 35561476 -116975783 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 856 616 260 77 39 chr5 35561476 35561545 -116975714 + B3 SINE B2 150 214 -2 9 856 833 316 76 54 chr5 35561557 35561877 -116975382 + MTEa-int LTR MaLR 680 1007 -573 9 856 390 100 0 0 chr5 35561877 35561937 -116975322 + (TTAGGG)n Simple_repeat Simple_repeat 1 60 0 1 856 833 316 76 54 chr5 35561937 35562024 -116975235 + MTEa-int LTR MaLR 1008 1095 -485 9 856 653 251 64 25 chr5 35562738 35563019 -116974240 + L1MB5 LINE L1 5817 6109 -65 1 856 552 97 0 0 chr5 35563069 35563162 -116974097 + (TG)n Simple_repeat Simple_repeat 1 93 0 1 856 385 291 41 82 chr5 35563171 35563317 -116973942 - B3A SINE B2 -57 141 2 1 856 531 0 0 0 chr5 35564660 35564719 -116972540 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 856 224 348 11 0 chr5 35566562 35566651 -116970608 + L3 LINE CR1 4224 4313 -176 1 856 351 0 0 0 chr5 35566692 35566731 -116970528 + (CAA)n Simple_repeat Simple_repeat 2 40 0 1 856 525 269 57 0 chr5 35566731 35566872 -116970387 - RSINE1 SINE B4 -14 151 3 1 856 30 0 0 0 chr5 35567624 35567654 -116969605 + AT_rich Low_complexity Low_complexity 1 30 0 1 856 871 53 23 0 chr5 35567654 35567786 -116969473 - L1Md_F3 LINE L1 0 6584 6450 1 856 899 208 19 19 chr5 35568018 35568234 -116969025 + B3 SINE B2 1 216 0 1 856 1478 38 43 0 chr5 35568725 35568910 -116968349 + B2_Mm1a SINE B2 1 193 0 1 856 333 93 0 0 chr5 35568910 35568964 -116968295 + (A)n Simple_repeat Simple_repeat 1 54 0 1 856 727 187 30 0 chr5 35570214 35570348 -116966911 + B1_Mur3 SINE Alu 1 138 -11 1 856 750 192 7 27 chr5 35570551 35570701 -116966558 - B1_Mus2 SINE Alu 0 147 1 1 856 344 340 156 40 chr5 35570730 35570954 -116966305 + RMER15 LTR ERVL 326 575 0 1 856 693 281 0 58 chr5 35571024 35571198 -116966061 + RSINE1 SINE B4 2 165 0 1 856 4707 158 149 2 chr5 35571198 35572068 -116965191 + RMER1B Other Other 65 1062 -4 1 856 299 281 0 12 chr5 35572078 35572161 -116965098 + ID4 SINE ID 2 83 0 1 856 323 317 24 30 chr5 35573196 35573340 -116963919 + MIRb SINE MIR 25 164 -104 1 856 251 294 98 0 chr5 35575052 35575154 -116962105 + LTR16D2 LTR ERVL 440 551 -21 1 856 289 122 27 0 chr5 35576804 35576878 -116960381 + (TTTTTG)n Simple_repeat Simple_repeat 3 78 0 1 856 230 282 10 0 chr5 35577057 35577160 -116960099 + (TAGA)n Simple_repeat Simple_repeat 4 107 0 1 856 198 333 0 0 chr5 35577236 35577389 -116959870 + (TGGA)n Simple_repeat Simple_repeat 1 153 0 1 856 309 281 0 0 chr5 35577416 35577551 -116959708 + (TGGA)n Simple_repeat Simple_repeat 1 135 0 1 856 202 267 0 22 chr5 35577575 35577667 -116959592 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 1 856 207 162 0 0 chr5 35578333 35578370 -116958889 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 856 318 352 5 48 chr5 35578392 35578580 -116958679 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 856 346 253 36 0 chr5 35579273 35579356 -116957903 - LTR16D LTR ERVL -15 636 551 1 856 612 27 0 0 chr5 35580049 35580123 -116957136 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 856 228 302 47 0 chr5 35580631 35580717 -116956542 + MLT2B3 LTR ERVL 45 134 -420 1 856 279 299 11 11 chr5 35582690 35582778 -116954481 + B4A SINE B4 1 88 -204 1 856 441 313 100 25 chr5 35582787 35583026 -116954233 + B4A SINE B4 4 260 -32 1 856 509 308 115 6 chr5 35583067 35583083 -116954176 + B4A SINE B4 72 87 -205 1 856 450 65 0 0 chr5 35583083 35583145 -116954114 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 1 856 509 308 115 6 chr5 35583145 35583311 -116953948 + B4A SINE B4 88 274 -18 1 856 276 77 0 0 chr5 35583537 35583576 -116953683 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 856 225 0 0 0 chr5 35583783 35583808 -116953451 + (A)n Simple_repeat Simple_repeat 1 25 0 1 856 2350 179 11 61 chr5 35584119 35584644 -116952615 - RMER20A LTR ERVK -7 509 11 1 856 979 289 84 32 chr5 35584647 35584958 -116952301 + MTEb LTR MaLR 50 376 -3 1 856 2492 272 18 18 chr5 35584961 35585635 -116951624 + MTEb-int LTR MaLR 1 674 -906 1 856 656 216 22 0 chr5 35585642 35585781 -116951478 + MTE2b LTR MaLR 1 142 -237 1 856 634 257 80 31 chr5 35586033 35586321 -116950938 - Tigger7 DNA MER2_type -3 2488 2281 1 856 355 316 103 0 chr5 35586315 35586432 -116950827 - MER44B DNA MER2_type -326 224 96 1 856 351 0 0 0 chr5 35587699 35587738 -116949521 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 856 354 80 0 0 chr5 35587738 35587788 -116949471 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 856 186 239 107 53 chr5 35590802 35590877 -116946382 - MIRc SINE MIR -179 89 11 1 856 2446 286 109 31 chr5 35591703 35592552 -116944707 + RCHARR1 DNA MER1_type 2 917 -57 1 856 192 40 0 0 chr5 35594942 35594967 -116942292 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 856 556 336 48 111 chr5 35595746 35596141 -116941118 + MTEa LTR MaLR 10 379 0 1 856 341 321 135 42 chr5 35596213 35596405 -116940854 + MTE-int LTR MaLR 238 447 -1133 1 856 231 135 0 0 chr5 35596412 35596449 -116940810 + RSINE1 SINE B4 5 41 -124 1 856 664 162 19 84 chr5 35596437 35596592 -116940667 + MTC LTR MaLR 277 421 0 1 856 554 186 0 7 chr5 35596648 35596789 -116940470 + (TG)n Simple_repeat Simple_repeat 2 141 0 1 856 231 331 7 22 chr5 35596819 35596958 -116940301 + (TG)n Simple_repeat Simple_repeat 1 137 0 1 856 406 292 180 16 chr5 35596962 35597206 -116940053 - B4A SINE B4 -8 284 1 1 856 286 302 68 19 chr5 35597347 35597509 -116939750 + MLT2D LTR ERVL 158 327 -87 1 856 184 341 21 62 chr5 35597916 35598013 -116939246 + MIRm SINE MIR 88 180 -96 1 856 389 301 135 35 chr5 35598883 35599083 -116938176 - RMER20B LTR ERVK -228 399 180 1 856 405 0 0 0 chr5 35600128 35600173 -116937086 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1 856 346 150 0 0 chr5 35600709 35600769 -116936490 - HAL1-3A_ME LINE L1 -823 2035 1976 1 856 609 222 10 3 chr5 35600777 35601072 -116936187 + (TG)n Simple_repeat Simple_repeat 1 297 0 1 856 640 266 123 104 chr5 35601089 35601173 -116936086 - B4A SINE B4 -4 288 231 1 856 878 224 49 0 chr5 35601173 35601378 -116935881 - B3 SINE B2 -1 215 1 1 856 640 266 123 104 chr5 35601378 35601553 -116935706 - B4A SINE B4 -62 230 24 1 856 256 246 0 71 chr5 35601746 35601873 -116935386 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 856 441 227 30 30 chr5 35601895 35602063 -116935196 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 856 265 155 27 65 chr5 35602084 35602270 -116934989 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 856 2012 209 30 26 chr5 35602354 35602854 -116934405 + RMER5 LTR ERV1 33 534 0 1 856 282 29 0 0 chr5 35602854 35602889 -116934370 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 856 712 259 65 23 chr5 35603057 35603318 -116933941 + L1MC4 LINE L1 6804 7075 -967 1 856 517 162 50 17 chr5 35603367 35603669 -116933590 + (TAGA)n Simple_repeat Simple_repeat 1 312 0 1 856 234 372 109 0 chr5 35604674 35604830 -116932429 - L1M3 LINE L1 -414 5775 5603 1 856 245 325 12 0 chr5 35604843 35604923 -116932336 - ID4 SINE ID -1 82 2 1 856 819 186 0 0 chr5 35604932 35605093 -116932166 + CT-rich Low_complexity Low_complexity 2 162 0 1 856 687 243 0 14 chr5 35605093 35605235 -116932024 - B1_Mur1 SINE Alu -5 144 5 1 856 589 252 54 13 chr5 35605434 35605583 -116931676 - RSINE1 SINE B4 0 165 11 1 856 323 388 27 29 chr5 35605646 35605680 -116931579 - L1PB4 LINE L1 -181 5975 5942 1 856 522 0 0 0 chr5 35605680 35605738 -116931521 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 856 577 338 14 29 chr5 35605738 35606077 -116931182 - L1PB4 LINE L1 -215 5941 5539 1 856 252 327 19 0 chr5 35606114 35606218 -116931041 - L1_Mm LINE L1 -404 5479 5374 1 856 442 300 45 32 chr5 35606525 35606680 -116930579 - MER58A DNA MER1_type -67 157 1 1 856 1783 185 90 14 chr5 35607092 35607459 -116929800 + MTD LTR MaLR 25 419 0 1 856 792 245 199 10 chr5 35608233 35608534 -116928725 + ORR1E LTR MaLR 2 359 0 1 856 26 0 0 0 chr5 35608866 35608892 -116928367 + GC_rich Low_complexity Low_complexity 1 26 0 1 856 240 347 144 35 chr5 35609249 35609422 -116927837 + LSU-rRNA_Hsa rRNA rRNA 4834 5025 -10 1 856 398 384 0 6 chr5 35609422 35609587 -116927672 + (CA)n Simple_repeat Simple_repeat 1 164 0 1 856 464 275 25 143 chr5 35612942 35613222 -116924037 - MLT1B LTR MaLR -74 316 70 1 856 192 97 0 0 chr5 35613244 35613275 -116923984 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 856 464 314 23 23 chr5 35613428 35613601 -116923658 + MLT1J LTR MaLR 69 241 -271 1 856 1046 144 0 0 chr5 35613916 35614062 -116923197 + B1_Mus1 SINE Alu 2 147 -1 1 856 743 139 8 0 chr5 35614062 35614191 -116923068 + (GGAA)n Simple_repeat Simple_repeat 1 130 0 1 856 937 260 71 48 chr5 35615203 35615596 -116921663 - MTE2a LTR MaLR -14 405 6 1 856 3103 40 48 0 chr5 35615653 35616025 -116921234 + RLTR10 LTR ERVK 1 390 0 1 856 226 252 0 36 chr5 35616811 35616922 -116920337 + (CATATA)n Simple_repeat Simple_repeat 6 112 0 1 856 289 342 78 54 chr5 35617085 35617289 -116919970 - MLT1D LTR MaLR -273 232 24 1 856 228 325 60 0 chr5 35617406 35617489 -116919770 - MLT1L LTR MaLR -188 422 335 1 856 237 309 41 0 chr5 35618568 35618665 -116918594 - MIR3 SINE MIR -15 193 93 1 856 209 221 38 25 chr5 35621745 35621824 -116915435 + (CCCCG)n Simple_repeat Simple_repeat 2 81 0 1 856 26 0 0 0 chr5 35622352 35622378 -116914881 + GC_rich Low_complexity Low_complexity 1 26 0 1 856 220 315 0 11 chr5 35622544 35622634 -116914625 + (CGG)n Simple_repeat Simple_repeat 1 89 0 1 856 180 235 39 19 chr5 35623865 35623917 -116913342 + L3 LINE CR1 119 171 -4318 1 856 504 70 23 11 chr5 35625389 35625476 -116911783 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 856 576 42 0 0 chr5 35625484 35625555 -116911704 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 856 207 100 0 0 chr5 35628347 35628377 -116908882 + (GAAAA)n Simple_repeat Simple_repeat 5 34 0 1 856 316 188 87 0 chr5 35632368 35632437 -116904822 - L1MC1 LINE L1 -9 6324 6250 1 856 437 239 34 17 chr5 35633566 35633685 -116903574 + MER34A LTR ERV1 2 122 -449 1 856 21 57 0 0 chr5 35635337 35635372 -116901887 + AT_rich Low_complexity Low_complexity 1 35 0 1 856 719 282 6 11 chr5 35635391 35635574 -116901685 - B3A SINE B2 -16 182 1 1 856 210 322 34 11 chr5 35635639 35635727 -116901532 - L3 LINE CR1 -90 4399 4310 1 856 191 264 158 47 chr5 35636167 35636294 -116900965 - MIRm SINE MIR -123 153 13 1 856 480 272 125 29 chr5 35638583 35638791 -116898468 - L1MC1 LINE L1 -186 6147 5920 2 856 373 302 61 12 chr5 35639778 35639942 -116897317 + MLT1C LTR MaLR 68 239 -228 2 856 495 82 0 0 chr5 35640052 35640125 -116897134 + (GA)n Simple_repeat Simple_repeat 1 73 0 2 856 303 28 0 0 chr5 35641319 35641355 -116895904 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 856 207 268 0 14 chr5 35641517 35641589 -116895670 + CT-rich Low_complexity Low_complexity 2 72 0 2 856 369 0 0 0 chr5 35641674 35641715 -116895544 + (A)n Simple_repeat Simple_repeat 1 41 0 2 856 387 0 0 0 chr5 35643498 35643541 -116893718 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 856 569 320 65 18 chr5 35644622 35644959 -116892300 + L1MD LINE L1 2395 2747 -3399 2 856 326 222 24 24 chr5 35644967 35645050 -116892209 - ID4_ SINE ID 0 83 1 2 856 400 269 67 0 chr5 35645050 35645154 -116892105 - ZP3AR Satellite Satellite -57 155 45 2 856 628 343 175 18 chr5 35645274 35646362 -116890897 + L1M4 LINE L1 2839 4091 -2055 2 856 242 297 29 19 chr5 35647495 35647598 -116889661 + MER103 DNA DNA 15 118 -48 2 856 182 229 0 0 chr5 35649410 35649445 -116887814 - MIRb SINE MIR -5 263 229 2 856 210 71 0 0 chr5 35650006 35650034 -116887225 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 2 856 1707 31 0 0 chr5 35650379 35650571 -116886688 - B2_Mm1a SINE B2 -1 192 1 2 856 535 252 99 0 chr5 35650703 35650854 -116886405 - L1M2 LINE L1 -820 5480 5315 2 856 878 203 69 25 chr5 35650872 35651074 -116886185 - B3 SINE B2 0 216 6 2 856 564 307 168 6 chr5 35651135 35651456 -116885803 + L1M2 LINE L1 4515 4887 -1256 2 857 2817 107 7 19 chr5 35651793 35651822 -116885437 - MTB_Mm LTR MaLR 0 407 377 2 857 360 0 0 0 chr5 35651822 35651862 -116885397 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 2 857 2817 107 7 19 chr5 35651862 35652244 -116885015 - MTB_Mm LTR MaLR -31 376 2 2 857 341 322 45 28 chr5 35652788 35652964 -116884295 + MER46C DNA MER2_type 32 210 -128 2 857 244 290 180 0 chr5 35653307 35653407 -116883852 - PB1D7 SINE Alu -2 118 1 2 857 278 353 101 32 chr5 35655184 35655462 -116881797 - L3 LINE CR1 -303 4186 3890 2 857 202 216 0 0 chr5 35655784 35655821 -116881438 + GA-rich Low_complexity Low_complexity 2 38 0 2 857 240 35 0 0 chr5 35656265 35656294 -116880965 + (A)n Simple_repeat Simple_repeat 1 29 0 2 857 219 272 52 52 chr5 35658107 35658204 -116879055 - MIRb SINE MIR -140 128 32 2 857 194 95 50 75 chr5 35658640 35658720 -116878539 + (CTCTG)n Simple_repeat Simple_repeat 5 82 0 2 857 279 114 49 86 chr5 35658746 35658909 -116878350 + (CTCTG)n Simple_repeat Simple_repeat 5 161 0 2 857 259 237 0 17 chr5 35660936 35660996 -116876263 + CT-rich Low_complexity Low_complexity 3 61 0 2 857 204 40 0 0 chr5 35661830 35661855 -116875404 + (ATG)n Simple_repeat Simple_repeat 3 27 0 2 857 234 0 0 0 chr5 35662146 35662172 -116875087 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 857 373 339 118 26 chr5 35662250 35662529 -116874730 - MLT1C LTR MaLR -67 400 89 2 857 1114 238 76 105 chr5 35662529 35662909 -116874350 + ORR1D2 LTR MaLR 1 369 -1 2 857 373 339 118 26 chr5 35662909 35662935 -116874324 - MLT1C LTR MaLR -379 88 67 2 857 194 91 0 29 chr5 35664472 35664506 -116872753 + (AGGGGG)n Simple_repeat Simple_repeat 2 34 0 2 857 414 0 0 0 chr5 35664607 35664653 -116872606 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 2 857 430 278 119 8 chr5 35666467 35666680 -116870579 - L1MB3 LINE L1 -7 6164 5924 2 857 456 284 60 113 chr5 35666702 35666753 -116870506 - L1MB3 LINE L1 -417 5754 5704 2 857 255 61 0 0 chr5 35666753 35666786 -116870473 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 857 456 284 60 113 chr5 35666786 35667115 -116870144 - L1MB3 LINE L1 -468 5703 5394 2 857 2760 224 95 61 chr5 35667875 35668698 -116868561 + RMER19B LTR ERVK 1 859 -43 2 857 1198 75 0 0 chr5 35668698 35668845 -116868414 + B1_Mus1 SINE Alu 1 147 -1 2 857 2760 224 95 61 chr5 35668845 35668893 -116868366 + RMER19B LTR ERVK 860 902 0 2 857 312 261 67 22 chr5 35669086 35669176 -116868083 - PB1D7 SINE Alu -5 115 22 2 857 1159 62 7 7 chr5 35669207 35669354 -116867905 - B1_Mm SINE Alu 0 147 1 2 857 1528 194 80 108 chr5 35669608 35670197 -116867062 - RMER20A LTR ERVK -80 547 2 2 857 709 200 8 8 chr5 35670852 35670983 -116866276 - RSINE1 SINE B4 -33 132 2 2 857 416 19 19 0 chr5 35671799 35671852 -116865407 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 857 768 234 137 0 chr5 35672693 35672890 -116864369 + ID_B1 SINE B4 1 224 0 2 857 423 167 0 0 chr5 35672926 35673016 -116864243 + GA-rich Low_complexity Low_complexity 2 91 0 2 857 230 328 59 17 chr5 35675010 35675128 -116862131 - MIR3 SINE MIR -19 189 67 2 857 1315 176 37 0 chr5 35675905 35676149 -116861110 + RMER19B LTR ERVK 1 253 -649 2 857 198 318 59 0 chr5 35677202 35677287 -116859972 - MIRb SINE MIR -94 174 85 2 857 470 263 105 30 chr5 35678713 35678913 -116858346 + B3 SINE B2 2 216 0 2 857 262 269 0 15 chr5 35679145 35679213 -116858046 - ID4_ SINE ID -1 82 16 2 857 260 215 0 30 chr5 35679153 35679220 -116858039 - tRNA-Ala-GCY_ tRNA tRNA -7 68 4 2 857 2433 83 3 58 chr5 35679480 35679826 -116857433 - ORR1A2 LTR MaLR 0 327 1 2 857 941 169 0 20 chr5 35681390 35681541 -116855718 - B1_Mur3 SINE Alu -1 148 1 2 857 422 65 0 16 chr5 35681571 35681634 -116855625 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 857 239 54 0 26 chr5 35681647 35681685 -116855574 + (TAGA)n Simple_repeat Simple_repeat 3 39 0 2 857 382 336 81 85 chr5 35682881 35683176 -116854083 - B4 SINE B4 -18 274 13 2 857 783 257 32 9 chr5 35683178 35683394 -116853865 - B4A SINE B4 -71 221 1 2 857 2603 83 0 0 chr5 35684273 35684600 -116852659 + ORR1A2 LTR MaLR 1 327 0 2 857 2057 210 5 12 chr5 35684797 35685211 -116852048 - MTD LTR MaLR -8 411 1 2 857 196 221 26 0 chr5 35685212 35685289 -116851970 + (TCCA)n Simple_repeat Simple_repeat 4 82 0 2 857 192 277 0 0 chr5 35685294 35685388 -116851871 + (CCCA)n Simple_repeat Simple_repeat 3 96 0 2 857 188 200 18 0 chr5 35685409 35685464 -116851795 + (TCCA)n Simple_repeat Simple_repeat 4 59 0 2 857 266 316 10 10 chr5 35685481 35685580 -116851679 + (TCCA)n Simple_repeat Simple_repeat 1 99 0 2 857 332 280 120 47 chr5 35685746 35685896 -116851363 + MLT1J1 LTR MaLR 5 165 -279 2 857 378 353 140 8 chr5 35689165 35689974 -116847285 - L1MC3 LINE L1 -133 7652 6714 2 857 1209 78 22 6 chr5 35690354 35690535 -116846724 + B2_Mm2 SINE B2 11 194 -1 2 857 1189 88 0 0 chr5 35690535 35690683 -116846576 + B1_Mus1 SINE Alu 1 148 0 2 857 273 98 0 0 chr5 35690685 35690726 -116846533 + (A)n Simple_repeat Simple_repeat 1 41 0 2 857 567 255 81 16 chr5 35690760 35690948 -116846311 + ORR1E LTR MaLR 1 218 -156 2 857 635 194 110 7 chr5 35691085 35691230 -116846029 - B3A SINE B2 -38 160 1 2 857 19650 204 85 56 chr5 35693618 35696628 -116840631 - Lx5 LINE L1 -27 7433 4060 2 857 486 0 0 0 chr5 35696628 35696682 -116840577 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 857 19650 172 63 34 chr5 35696682 35698416 -116838843 - Lx5 LINE L1 -1821 4059 2224 2 857 940 186 10 20 chr5 35698416 35698613 -116838646 - B2_Mm2 SINE B2 0 195 1 2 857 19650 174 65 38 chr5 35698613 35699887 -116837372 - Lx5 LINE L1 -3657 2223 958 2 857 336 286 12 0 chr5 35700029 35700113 -116837146 + RSINE1 SINE B4 4 88 -77 2 857 1248 244 14 101 chr5 35700152 35700567 -116836692 + MTE2a LTR MaLR 1 379 0 2 857 1054 132 17 6 chr5 35700784 35700959 -116836300 + RMER10A LTR ERVL 1 177 -265 2 857 797 142 19 51 chr5 35700949 35701105 -116836154 + RMER10A LTR ERVL 290 440 -2 2 857 2111 181 88 32 chr5 35701365 35701862 -116835397 + RLTR11A LTR ERVK 1 525 -3 2 857 181 265 20 0 chr5 35702200 35702249 -116835010 - L2 LINE L2 -345 3074 3025 2 857 1310 229 77 79 chr5 35704145 35704524 -116832735 + MTE2b LTR MaLR 1 378 -1 2 857 861 135 56 14 chr5 35705831 35705974 -116831285 - B1_Mur3 SINE Alu 0 149 1 2 857 219 133 0 0 chr5 35706004 35706049 -116831210 + (T)n Simple_repeat Simple_repeat 1 45 0 2 857 1155 70 7 0 chr5 35706054 35706196 -116831063 - B1_Mus2 SINE Alu 0 147 5 2 857 232 304 106 10 chr5 35707390 35707541 -116829718 - MIR SINE MIR -99 169 3 2 857 513 84 0 0 chr5 35708686 35708757 -116828502 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 857 198 0 0 0 chr5 35708916 35708938 -116828321 + (CAGGG)n Simple_repeat Simple_repeat 3 24 0 2 857 528 300 57 67 chr5 35709931 35710228 -116827031 - Arthur1 DNA Tip100 -97 3850 3557 2 857 207 0 0 0 chr5 35710272 35710295 -116826964 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 857 22 0 0 0 chr5 35710326 35710348 -116826911 + AT_rich Low_complexity Low_complexity 1 22 0 2 857 803 297 78 15 chr5 35710401 35710736 -116826523 - Arthur1 DNA Tip100 -741 3206 2851 2 857 1768 187 79 8 chr5 35713003 35713359 -116823900 - ORR1C2 LTR MaLR 0 384 4 2 857 374 341 58 78 chr5 35713483 35713791 -116823468 + ORR1E LTR MaLR 55 356 -3 2 857 351 0 0 0 chr5 35713860 35713899 -116823360 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 857 342 344 37 27 chr5 35713996 35714184 -116823075 + L1MC4 LINE L1 6772 6961 -1081 2 857 645 214 53 15 chr5 35714421 35714554 -116822705 + B1_Mur2 SINE Alu 12 149 0 2 857 248 111 0 22 chr5 35714565 35714611 -116822648 + (GGGGA)n Simple_repeat Simple_repeat 3 47 0 2 857 4414 58 0 0 chr5 35714846 35715376 -116821883 - L1_Mus1 LINE L1 0 6567 6038 2 857 558 293 44 6 chr5 35715445 35715603 -116821656 + RSINE1 SINE B4 2 165 0 2 857 1991 211 21 40 chr5 35716539 35716905 -116820354 - MTD LTR MaLR -2 417 46 2 857 1429 70 5 41 chr5 35716905 35717099 -116820160 + B2_Mm2 SINE B2 3 189 -6 2 857 1991 211 21 40 chr5 35717099 35717157 -116820102 - MTD LTR MaLR -374 45 1 2 857 243 331 72 32 chr5 35717205 35717330 -116819929 + MIRm SINE MIR 70 199 -63 2 857 710 110 17 0 chr5 35717434 35717552 -116819707 + (GGAA)n Simple_repeat Simple_repeat 2 121 0 2 857 243 0 0 0 chr5 35718276 35718303 -116818956 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 857 189 0 0 0 chr5 35718722 35718743 -116818516 + (CAGGC)n Simple_repeat Simple_repeat 4 24 0 3 857 1229 20 7 0 chr5 35718913 35719061 -116818198 + (TCTCCC)n Simple_repeat Simple_repeat 3 151 0 3 857 260 200 14 0 chr5 35719066 35719136 -116818123 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 857 201 323 72 10 chr5 35720219 35720316 -116816943 + MIRm SINE MIR 82 184 -92 3 857 367 159 34 0 chr5 35721030 35721118 -116816141 + G-rich Low_complexity Low_complexity 2 92 0 3 857 631 169 68 23 chr5 35721664 35721797 -116815462 + B1_Mm SINE Alu 9 147 0 3 857 605 99 11 0 chr5 35721796 35721887 -116815372 + URR1B DNA MER1_type 132 223 -2 3 857 356 294 97 92 chr5 35723633 35723945 -116813314 + ORR1E LTR MaLR 39 370 0 3 857 460 265 43 50 chr5 35723986 35724125 -116813134 - MLT1A1 LTR MaLR -28 380 243 3 857 1158 112 0 0 chr5 35724203 35724381 -116812878 + (TGGA)n Simple_repeat Simple_repeat 2 179 0 3 857 269 258 10 49 chr5 35725995 35726097 -116811162 + CT-rich Low_complexity Low_complexity 2 99 0 3 857 668 246 142 0 chr5 35726192 35726375 -116810884 + ID_B1 SINE B4 16 224 0 3 857 263 280 73 123 chr5 35726262 35726441 -116810818 - YREP_Mm Unknown Unknown -1518 294 125 3 857 828 158 0 0 chr5 35726977 35727116 -116810143 - B1_Mus1 SINE Alu -5 143 5 3 857 269 316 57 156 chr5 35728087 35728331 -116808928 + MER2 DNA MER2_type 2 221 -124 3 857 219 244 0 0 chr5 35728840 35728885 -116808374 - L3 LINE CR1 -3664 825 781 3 857 297 231 0 124 chr5 35729796 35729823 -116807436 + ID SINE ID 65 80 -144 3 857 374 184 68 4 chr5 35729823 35729924 -116807335 + B1_Mur4 SINE Alu 1 117 0 3 857 257 327 29 10 chr5 35730932 35731034 -116806225 - MamRep4096 DNA hAT? -281 145 42 3 857 22 35 0 0 chr5 35731433 35731462 -116805797 + GC_rich Low_complexity Low_complexity 1 29 0 3 857 220 293 10 20 chr5 35731876 35731977 -116805282 + (CGA)n Simple_repeat Simple_repeat 2 101 0 3 857 188 35 35 0 chr5 35733218 35733247 -116804012 + (CCCCCA)n Simple_repeat Simple_repeat 3 32 0 3 857 282 221 11 23 chr5 35734497 35734585 -116802674 + (CGG)n Simple_repeat Simple_repeat 1 87 0 3 857 25 0 0 0 chr5 35734844 35734869 -116802390 + GC_rich Low_complexity Low_complexity 1 25 0 3 857 252 0 0 0 chr5 35737320 35737348 -116799911 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 857 405 0 0 0 chr5 35737348 35737393 -116799866 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 857 22 0 0 0 chr5 35738971 35738993 -116798266 + AT_rich Low_complexity Low_complexity 1 22 0 3 857 206 209 0 0 chr5 35739403 35739446 -116797813 + G-rich Low_complexity Low_complexity 1 43 0 3 857 219 172 62 0 chr5 35740459 35740523 -116796736 + (CCCCG)n Simple_repeat Simple_repeat 5 72 0 3 857 335 224 67 42 chr5 35742814 35742942 -116794317 - B1_Mur1 SINE Alu -21 129 1 3 857 339 25 0 0 chr5 35743171 35743211 -116794048 + (TTA)n Simple_repeat Simple_repeat 3 42 0 3 857 252 317 12 47 chr5 35743211 35743297 -116793962 - PB1D10 SINE Alu -14 103 21 3 857 397 185 24 24 chr5 35743741 35743824 -116793435 - ID4_ SINE ID 0 83 1 3 857 372 43 0 0 chr5 35744619 35744665 -116792594 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 3 857 684 318 135 12 chr5 35744665 35744990 -116792269 - MLT2C2 LTR ERVL -99 365 1 3 857 384 22 0 0 chr5 35745150 35745195 -116792064 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 857 314 316 8 66 chr5 35747807 35747929 -116789330 - PB1D9 SINE Alu -1 119 5 3 857 315 0 0 0 chr5 35748428 35748463 -116788796 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 857 240 35 0 0 chr5 35748463 35748491 -116788768 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 857 315 311 0 37 chr5 35749637 35749744 -116787515 - HAL1-3A_ME LINE L1 -781 2077 1975 3 857 227 200 65 58 chr5 35750567 35750636 -116786623 + L2a LINE L2 3309 3406 -20 3 857 352 155 17 17 chr5 35751000 35751118 -116786141 + (TCTG)n Simple_repeat Simple_repeat 1 118 0 3 857 603 309 106 0 chr5 35753023 35753211 -116784048 - ID_B1 SINE B4 -16 208 1 3 857 1975 118 68 10 chr5 35753422 35753730 -116783529 - ORR1A3 LTR MaLR 0 326 1 3 857 1870 274 111 25 chr5 35753738 35754447 -116782812 - Lx8 LINE L1 -150 7323 6554 3 857 374 88 0 14 chr5 35754447 35754516 -116782743 + (TTTTTG)n Simple_repeat Simple_repeat 5 72 0 3 857 397 178 0 0 chr5 35754516 35754589 -116782670 - PB1D10 SINE Alu 0 117 45 3 857 844 157 0 7 chr5 35754597 35754738 -116782521 - B3 SINE B2 -75 141 2 3 857 637 222 55 11 chr5 35758261 35758443 -116778816 - L1MC LINE L1 -1450 4696 4507 3 857 540 0 0 0 chr5 35758448 35758508 -116778751 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 857 236 322 0 32 chr5 35758558 35758651 -116778608 + CT-rich Low_complexity Low_complexity 2 91 0 3 857 308 311 133 43 chr5 35759254 35759509 -116777750 - L1MC1 LINE L1 -9 6324 6047 3 857 359 209 86 0 chr5 35759759 35759864 -116777395 - L1MC LINE L1 -3387 2759 2646 3 857 330 286 91 16 chr5 35761290 35761411 -116775848 + ID_B1 SINE B4 87 216 -8 3 857 422 282 48 0 chr5 35761453 35761556 -116775703 + PB1D7 SINE Alu 13 120 0 3 857 840 225 24 77 chr5 35761560 35761767 -116775492 + B3A SINE B2 3 198 0 3 857 237 83 0 0 chr5 35761790 35761826 -116775433 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3 857 315 0 0 0 chr5 35762980 35763015 -116774244 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 857 421 252 18 45 chr5 35764075 35764187 -116773072 + PB1D10 SINE Alu 9 117 0 3 857 346 364 25 0 chr5 35765097 35765259 -116772000 + HAL1-2a_MD LINE L1 2328 2493 -531 3 857 576 262 0 80 chr5 35765268 35765455 -116771804 + HAL1-2a_MD LINE L1 2348 2519 -505 3 857 306 283 0 21 chr5 35765455 35765549 -116771710 + (CACCAT)n Simple_repeat Simple_repeat 5 96 0 3 857 247 312 49 12 chr5 35765704 35765785 -116771474 + MER58B DNA MER1_type 239 322 -19 3 857 518 323 69 122 chr5 35766002 35766379 -116770880 + ORR1E LTR MaLR 3 359 0 3 857 507 284 56 91 chr5 35766429 35766681 -116770578 + ORR1E LTR MaLR 112 354 -5 3 857 477 0 0 0 chr5 35766698 35766751 -116770508 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 857 234 211 17 17 chr5 35767092 35767150 -116770109 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 857 180 261 7 48 chr5 35767162 35767307 -116769952 + (TATG)n Simple_repeat Simple_repeat 4 142 0 3 857 582 192 0 0 chr5 35767280 35767431 -116769828 + (TG)n Simple_repeat Simple_repeat 2 152 0 3 857 197 351 13 0 chr5 35768400 35768477 -116768782 + MIRc SINE MIR 110 187 -81 3 857 1222 244 149 9 chr5 35771856 35772179 -116765080 + ORR1D2 LTR MaLR 3 370 0 3 857 1567 258 41 23 chr5 35772270 35772663 -116764596 - MTD LTR MaLR -19 400 1 3 857 433 314 13 13 chr5 35772665 35772823 -116764436 + (CACCAT)n Simple_repeat Simple_repeat 3 160 0 3 857 182 390 0 24 chr5 35777177 35777261 -116759998 + L4 LINE RTE 565 646 -1383 3 857 602 296 69 83 chr5 35778084 35778445 -116758814 - ORR1E LTR MaLR -3 356 1 3 857 285 337 0 12 chr5 35778445 35778529 -116758730 - ORR1E-int LTR MaLR -53 1527 1445 3 857 319 249 117 83 chr5 35778516 35778553 -116758706 - B2_Mm2 SINE B2 -9 186 149 3 857 405 0 0 0 chr5 35778553 35778598 -116758661 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 857 528 197 118 11 chr5 35778598 35778740 -116758519 - B3A SINE B2 -48 150 1 3 857 2691 308 141 15 chr5 35778740 35780037 -116757222 - ORR1E-int LTR MaLR -118 1462 1 3 857 571 285 153 52 chr5 35780039 35780209 -116757050 - ORR1E LTR MaLR 0 359 176 3 857 261 75 0 0 chr5 35780209 35780249 -116757010 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 3 857 571 285 153 52 chr5 35780249 35780404 -116756855 - ORR1E LTR MaLR -184 175 2 3 857 675 236 69 146 chr5 35781354 35781399 -116755860 - B3 SINE B2 0 216 182 3 857 414 0 0 0 chr5 35781399 35781445 -116755814 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 857 675 236 69 146 chr5 35781445 35781473 -116755786 - B3 SINE B2 -35 181 169 3 857 707 226 14 0 chr5 35781473 35781619 -116755640 - B1_Mur1 SINE Alu -1 148 1 3 857 675 236 69 146 chr5 35781619 35781777 -116755482 - B3 SINE B2 -48 168 2 3 857 228 306 23 23 chr5 35781828 35781915 -116755344 + RMER21A LTR ERV1 251 337 -610 3 857 818 154 14 14 chr5 35782170 35782181 -116755078 - B1_Mur4 SINE Alu 0 150 141 3 857 207 0 0 0 chr5 35782181 35782204 -116755055 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 857 818 154 14 14 chr5 35782204 35782337 -116754922 - B1_Mur4 SINE Alu -10 140 6 3 858 1129 83 0 0 chr5 35784670 35784814 -116752445 + B1_Mus2 SINE Alu 2 145 -2 3 858 360 0 0 0 chr5 35785617 35785657 -116751602 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 858 2629 58 65 0 chr5 35786747 35787072 -116750187 + ORR1A1 LTR MaLR 1 346 0 3 858 216 122 0 0 chr5 35787295 35787336 -116749923 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 858 633 90 0 0 chr5 35787350 35787439 -116749820 + (CA)n Simple_repeat Simple_repeat 2 90 0 3 858 3781 141 2 28 chr5 35788340 35788772 -116748487 + RMER19A LTR ERVK 1 430 -307 3 858 5638 43 1 0 chr5 35788772 35789439 -116747820 + L1Md_F2 LINE L1 5915 6582 0 3 858 3781 141 2 28 chr5 35789439 35789641 -116747618 + RMER19A LTR ERVK 431 618 -119 3 858 591 275 29 29 chr5 35789658 35789860 -116747399 - MTD LTR MaLR -204 215 1 3 858 1011 70 87 19 chr5 35789890 35790051 -116747208 - B2_Mm2 SINE B2 -21 174 3 3 858 279 0 0 0 chr5 35790261 35790292 -116746967 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 858 395 320 7 45 chr5 35792865 35793019 -116744240 + B4 SINE B4 2 149 -143 3 858 407 319 93 82 chr5 35793062 35793417 -116743842 + ORR1E LTR MaLR 1 359 0 3 858 349 267 33 106 chr5 35793473 35793624 -116743635 - MLT1C LTR MaLR -320 147 8 3 858 429 20 0 0 chr5 35796183 35796233 -116741026 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 858 488 216 105 65 chr5 35797537 35797661 -116739598 - RSINE1 SINE B4 -28 137 9 3 858 267 306 0 0 chr5 35799632 35799704 -116737555 + ID4_ SINE ID 12 83 0 3 858 237 176 54 21 chr5 35799797 35799890 -116737369 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 858 32 26 0 0 chr5 35799917 35799956 -116737303 + AT_rich Low_complexity Low_complexity 1 39 0 4 858 21 0 0 0 chr5 35800376 35800397 -116736862 + AT_rich Low_complexity Low_complexity 1 21 0 4 858 885 258 9 27 chr5 35800502 35800721 -116736538 + B3 SINE B2 1 215 -1 4 858 901 199 89 0 chr5 35800746 35800937 -116736322 + B3 SINE B2 6 213 -3 4 858 279 0 0 0 chr5 35801924 35801955 -116735304 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 858 702 296 97 0 chr5 35801974 35802180 -116735079 - B4A SINE B4 -66 226 1 4 858 687 242 64 24 chr5 35802532 35802735 -116734524 - B3A SINE B2 -2 214 2 4 858 537 301 8 0 chr5 35802792 35802915 -116734344 - RSINE1 SINE B4 -34 131 8 4 858 232 368 19 13 chr5 35802980 35803137 -116734122 + L1M5 LINE L1 4417 4574 -1572 4 858 294 348 0 0 chr5 35805167 35805259 -116732000 - MIR SINE MIR -68 140 49 4 858 294 361 44 28 chr5 35805261 35805443 -116731816 - MLT1C LTR MaLR 0 467 283 4 858 199 279 37 25 chr5 35807276 35807357 -116729902 - L2 LINE L2 -2570 849 768 4 858 205 304 0 18 chr5 35807993 35808050 -116729209 + CT-rich Low_complexity Low_complexity 3 58 0 4 858 253 361 6 6 chr5 35808305 35808399 -116728860 + CT-rich Low_complexity Low_complexity 63 156 0 4 858 213 39 0 0 chr5 35808399 35808425 -116728834 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 4 858 253 361 6 6 chr5 35808425 35808486 -116728773 + polypyrimidine Low_complexity Low_complexity 2 62 0 4 858 792 169 6 17 chr5 35809427 35809607 -116727652 + CT-rich Low_complexity Low_complexity 3 180 0 4 858 235 306 93 0 chr5 35810440 35810548 -116726711 - L2b LINE L2 -1 3374 3257 4 858 274 246 0 0 chr5 35811216 35811277 -116725982 + MER44D DNA MER2_type 44 104 -601 4 858 382 306 32 24 chr5 35811442 35811458 -116725801 + ID_B1 SINE B4 70 151 -73 4 858 512 216 20 0 chr5 35811458 35811560 -116725699 + B1F1 SINE Alu 7 110 -39 4 858 378 0 0 0 chr5 35811612 35811654 -116725605 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 858 202 218 106 90 chr5 35811793 35811919 -116725340 + MIRc SINE MIR 1 122 -154 4 858 244 387 7 7 chr5 35813261 35813467 -116723792 + (TG)n Simple_repeat Simple_repeat 1 206 0 4 858 228 340 9 9 chr5 35813501 35813608 -116723651 + (TG)n Simple_repeat Simple_repeat 2 108 0 4 858 1000 256 102 30 chr5 35815738 35816072 -116721187 + ORR1E LTR MaLR 2 359 0 4 858 189 0 0 0 chr5 35816595 35816616 -116720643 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 4 858 219 180 30 20 chr5 35816966 35817015 -116720244 - MIR SINE MIR -62 146 88 4 858 407 242 33 0 chr5 35817354 35817445 -116719814 - ID_B1 SINE B4 -2 222 129 4 858 182 333 0 0 chr5 35818398 35818461 -116718798 + MIRb SINE MIR 116 178 -90 4 858 1179 70 0 0 chr5 35819065 35819236 -116718023 + (TG)n Simple_repeat Simple_repeat 2 172 0 4 858 470 302 30 36 chr5 35819388 35819556 -116717703 + MER44D DNA MER2_type 1 167 -538 4 858 270 355 58 0 chr5 35819705 35819826 -116717433 + MER58A DNA MER1_type 2 129 -95 4 858 423 194 0 0 chr5 35820891 35820984 -116716275 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 4 858 354 291 4 8 chr5 35821007 35821250 -116716009 + (TCCA)n Simple_repeat Simple_repeat 1 242 0 4 858 232 269 10 88 chr5 35822295 35822397 -116714862 - MLT1H LTR MaLR -195 354 261 4 858 1413 115 0 0 chr5 35824461 35824653 -116712606 + B2_Mm2 SINE B2 1 192 -3 4 858 273 180 49 0 chr5 35824686 35824747 -116712512 - B3 SINE B2 0 216 153 4 858 875 296 38 15 chr5 35825377 35825644 -116711615 + B4A SINE B4 20 292 0 4 858 522 0 0 0 chr5 35825674 35825732 -116711527 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 858 708 12 0 0 chr5 35825732 35825812 -116711447 + (CA)n Simple_repeat Simple_repeat 1 81 0 4 858 311 222 108 27 chr5 35825821 35825895 -116711364 + PB1D10 SINE Alu 1 80 -37 4 858 980 50 0 57 chr5 35827071 35827285 -116709974 + (TC)n Simple_repeat Simple_repeat 1 201 0 4 858 252 0 0 0 chr5 35827285 35827312 -116709947 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 858 236 317 79 18 chr5 35827676 35827748 -116709511 - L1MD LINE L1 -1940 4206 4137 4 858 3577 15 5 0 chr5 35827748 35828142 -116709117 + MTA_Mm LTR MaLR 1 396 0 4 858 236 317 79 18 chr5 35828142 35828233 -116709026 - L1MD LINE L1 -2010 4136 4033 4 858 1116 258 9 136 chr5 35828339 35828765 -116708494 + MTE2a LTR MaLR 1 372 -7 4 858 541 340 28 57 chr5 35829295 35829682 -116707577 - L1M5 LINE L1 -3321 2825 2450 4 858 234 0 0 0 chr5 35829781 35829807 -116707452 + (T)n Simple_repeat Simple_repeat 1 26 0 4 858 692 75 0 0 chr5 35829823 35829917 -116707342 - B2_Mm2 SINE B2 -100 95 2 4 858 1483 223 122 11 chr5 35830389 35830766 -116706493 - MTD LTR MaLR 0 419 1 4 858 388 202 49 16 chr5 35833432 35833547 -116703712 + PB1D7 SINE Alu 17 130 -17 4 858 213 270 53 13 chr5 35833702 35833777 -116703482 + ID4 SINE ID 2 79 -4 4 858 350 299 9 36 chr5 35834119 35834230 -116703029 + Tigger5 DNA MER2_type 3 110 -2296 4 858 1241 40 0 20 chr5 35834286 35834437 -116702822 + B1_Mus1 SINE Alu 1 148 0 4 858 1001 225 70 0 chr5 35834479 35834679 -116702580 - B3 SINE B2 0 216 3 4 858 216 214 0 0 chr5 35834790 35834832 -116702427 + MIR SINE MIR 77 118 -144 4 858 314 298 62 72 chr5 35835233 35835428 -116701831 + B2_Mm2 SINE B2 2 194 -1 4 858 227 314 143 0 chr5 35837016 35837121 -116700138 - MLT1D LTR MaLR -47 458 339 4 858 231 36 0 0 chr5 35837382 35837410 -116699849 + (CCCCCA)n Simple_repeat Simple_repeat 1 28 0 4 858 965 91 38 0 chr5 35840750 35840882 -116696377 + B1_Mur3 SINE Alu 2 138 -11 4 858 465 158 0 0 chr5 35840901 35840983 -116696276 + GA-rich Low_complexity Low_complexity 3 84 0 4 858 606 39 0 0 chr5 35840987 35841064 -116696195 + (GGGGA)n Simple_repeat Simple_repeat 3 79 0 4 858 500 327 137 22 chr5 35841934 35842212 -116695047 - MLT1A LTR MaLR -15 359 50 4 858 2283 145 70 66 chr5 35842406 35842894 -116694365 + Lx LINE L1 6159 6648 -6 4 858 279 312 77 17 chr5 35845454 35845637 -116691622 + L2b LINE L2 3052 3248 -139 4 858 889 223 11 0 chr5 35845645 35845820 -116691439 - B3 SINE B2 0 216 40 4 858 507 229 18 0 chr5 35845909 35846018 -116691241 + ORR1E LTR MaLR 1 111 -248 4 858 316 287 139 0 chr5 35846015 35846123 -116691136 + ORR1E LTR MaLR 252 374 -5 4 858 853 159 13 40 chr5 35851238 35851389 -116685870 + B1_Mus2 SINE Alu 1 147 0 4 858 947 134 35 14 chr5 35851408 35851552 -116685707 + B1_Mus1 SINE Alu 2 148 0 4 858 762 84 0 0 chr5 35851568 35851675 -116685584 + (GGAA)n Simple_repeat Simple_repeat 1 107 0 4 858 249 260 0 0 chr5 35852206 35852310 -116684949 + (TGAA)n Simple_repeat Simple_repeat 3 106 0 4 858 864 0 0 0 chr5 35853095 35853191 -116684068 + (TCCCC)n Simple_repeat Simple_repeat 2 97 0 4 858 302 70 0 0 chr5 35854833 35854876 -116682383 - ID4_ SINE ID -39 44 2 4 858 1001 189 8 3 chr5 35855564 35855928 -116681331 + (TGGA)n Simple_repeat Simple_repeat 1 366 0 4 858 363 219 0 0 chr5 35855996 35856092 -116681167 + (TGGA)n Simple_repeat Simple_repeat 1 96 0 4 858 757 115 41 8 chr5 35857291 35857313 -116679946 - B1_Mur2 SINE Alu -11 138 12 4 858 263 291 61 95 chr5 35857313 35857414 -116679845 - MT2B LTR ERVL -337 264 176 4 858 3568 30 0 0 chr5 35857414 35857810 -116679449 + MTA_Mm LTR MaLR 1 396 0 4 858 263 291 61 95 chr5 35857810 35857856 -116679403 - MT2B LTR ERVL -426 175 122 4 858 568 257 20 14 chr5 35860986 35861132 -116676127 - B1F SINE Alu -2 147 1 4 858 506 259 36 0 chr5 35862905 35863044 -116674215 - ID_B1 SINE B4 0 224 81 4 858 942 182 0 0 chr5 35863145 35863804 -116673455 + CT-rich Low_complexity Low_complexity 1 659 0 4 858 361 301 31 79 chr5 35865274 35865501 -116671758 - MLT1B LTR MaLR -7 383 168 4 858 1269 182 173 18 chr5 35866076 35866417 -116670842 + MTD LTR MaLR 12 405 -14 4 858 2986 174 115 20 chr5 35869431 35870142 -116667117 + RLTR13D1 LTR ERVK 1 779 -27 4 858 774 265 215 18 chr5 35871249 35871630 -116665629 - RMER5 LTR ERV1 -2 532 77 4 858 722 78 0 0 chr5 35875926 35876017 -116661242 + B1_Mus2 SINE Alu 45 135 -12 4 858 294 0 0 61 chr5 35876017 35876066 -116661193 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 4 858 628 157 17 17 chr5 35876084 35876201 -116661058 + URR1B DNA MER1_type 36 152 -73 4 858 7797 46 3 0 chr5 35876231 35877203 -116660056 + L1_Mus1 LINE L1 5587 6561 -6 4 858 441 179 36 0 chr5 35877204 35877288 -116659971 + URR1B DNA MER1_type 139 225 0 4 858 1154 70 6 0 chr5 35877390 35877547 -116659712 + B2_Mm2 SINE B2 1 158 -37 4 858 303 28 0 0 chr5 35877548 35877584 -116659675 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 4 858 25 0 0 0 chr5 35877611 35877636 -116659623 + AT_rich Low_complexity Low_complexity 1 25 0 4 858 1101 57 50 0 chr5 35877642 35877782 -116659477 + B1_Mm SINE Alu 1 147 0 4 858 279 0 0 0 chr5 35877883 35877914 -116659345 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 4 858 573 169 0 0 chr5 35877936 35878072 -116659187 + (CA)n Simple_repeat Simple_repeat 1 136 0 4 858 776 263 10 10 chr5 35878994 35879186 -116658073 - ORR1E LTR MaLR -167 192 1 4 858 245 348 160 28 chr5 35880397 35880610 -116656649 - MLT1E3 LTR MaLR -241 383 143 4 858 414 85 0 0 chr5 35881472 35881531 -116655728 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 858 609 281 76 6 chr5 35881536 35881708 -116655551 - B4 SINE B4 -19 273 90 4 858 351 212 0 96 chr5 35881706 35881800 -116655459 + RSINE1 SINE B4 75 159 -6 4 858 914 146 263 0 chr5 35881856 35882027 -116655232 + B3 SINE B2 1 216 0 5 858 360 0 0 0 chr5 35882473 35882513 -116654746 + (CTG)n Simple_repeat Simple_repeat 2 41 0 5 858 738 255 7 0 chr5 35882672 35882821 -116654438 + RSINE1 SINE B4 3 152 -13 5 858 549 0 0 0 chr5 35882843 35882904 -116654355 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 5 858 1192 158 34 0 chr5 35884426 35884635 -116652624 - B3 SINE B2 0 216 1 5 858 1581 47 0 20 chr5 35884883 35885079 -116652180 + B2_Mm1a SINE B2 2 193 0 5 858 1093 92 7 0 chr5 35885091 35885232 -116652027 - B1_Mus1 SINE Alu -5 143 2 5 858 941 282 165 14 chr5 35885795 35886220 -116651039 - RMER5 LTR ERV1 -7 527 39 5 858 184 303 121 0 chr5 35887131 35887197 -116650062 + MIR SINE MIR 112 185 -77 5 858 252 0 0 0 chr5 35887514 35887542 -116649717 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 858 1236 41 0 27 chr5 35887810 35887960 -116649299 + B1_Mm SINE Alu 2 147 0 5 858 390 278 29 87 chr5 35888521 35888659 -116648600 + RMER10B LTR ERVL 269 398 0 5 858 276 138 46 0 chr5 35888707 35888772 -116648487 + CT-rich Low_complexity Low_complexity 3 70 0 5 858 21 36 0 0 chr5 35888856 35888884 -116648375 + AT_rich Low_complexity Low_complexity 1 28 0 5 858 2103 159 41 48 chr5 35889036 35889452 -116647807 - MTC LTR MaLR -8 413 1 5 858 3022 213 80 55 chr5 35889452 35889626 -116647633 - MTC-int LTR MaLR 0 1258 1081 5 858 3775 129 4 6 chr5 35889626 35890172 -116647087 + Lx4B LINE L1 6513 7057 -1 5 858 3022 197 59 30 chr5 35890172 35890947 -116646312 - MTC-int LTR MaLR -178 1080 187 5 858 3416 26 3 5 chr5 35890947 35891338 -116645921 + RLTR10 LTR ERVK 1 390 0 5 858 16541 20 18 0 chr5 35891338 35893289 -116643970 + RLTR10-int LTR ERVK 1 1986 -1 5 858 3416 26 3 5 chr5 35893289 35893680 -116643579 + RLTR10 LTR ERVK 1 390 0 5 858 1014 109 37 26 chr5 35893680 35893869 -116643390 - MTC-int LTR MaLR -1066 192 2 5 858 1703 139 172 6 chr5 35893872 35894226 -116643033 - MTC LTR MaLR -8 413 1 5 858 431 213 0 109 chr5 35903463 35903647 -116633612 + CT-rich Low_complexity Low_complexity 5 168 0 5 858 1854 150 114 24 chr5 35903665 35903989 -116633270 + MTC LTR MaLR 12 361 -60 5 858 2146 119 21 62 chr5 35903989 35904329 -116632930 + ORR1A3 LTR MaLR 1 326 0 5 858 1854 150 114 24 chr5 35904329 35904380 -116632879 + MTC LTR MaLR 362 421 0 5 858 213 180 29 116 chr5 35904620 35904689 -116632570 + L3 LINE CR1 4321 4383 -106 5 858 231 299 52 0 chr5 35907221 35907298 -116629961 - ID4 SINE ID -2 81 1 5 858 1822 130 95 0 chr5 35910307 35910623 -116626636 + ORR1B1 LTR MaLR 41 386 -8 5 858 910 149 7 7 chr5 35910796 35910938 -116626321 - B1_Mur1 SINE Alu -6 143 2 5 858 270 259 48 24 chr5 35910981 35911064 -116626195 - PB1D10 SINE Alu -32 85 1 5 858 1518 53 32 0 chr5 35911980 35912168 -116625091 + B2_Mm2 SINE B2 1 194 -1 5 858 592 147 26 0 chr5 35912171 35912287 -116624972 + GA-rich Low_complexity Low_complexity 4 122 0 5 858 386 290 20 0 chr5 35912332 35912432 -116624827 + B1F1 SINE Alu 48 149 0 5 858 340 297 0 11 chr5 35912701 35912793 -116624466 + PB1D10 SINE Alu 18 108 -9 5 858 400 229 0 24 chr5 35912803 35912888 -116624371 + ID4 SINE ID 1 83 0 5 859 761 242 77 10 chr5 35914061 35914257 -116623002 + B4A SINE B4 2 210 -82 5 859 767 207 25 60 chr5 35914742 35914942 -116622317 + B3A SINE B2 2 194 -4 5 859 443 176 47 0 chr5 35914980 35915076 -116622183 + PB1D10 SINE Alu 11 120 0 5 859 420 111 0 0 chr5 35915677 35915740 -116621519 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 859 216 250 0 97 chr5 35915750 35915812 -116621447 - ID4 SINE ID -16 67 12 5 859 313 306 86 8 chr5 35915923 35916047 -116621212 + MLT1A0 LTR MaLR 6 129 -236 5 859 279 0 0 0 chr5 35916282 35916313 -116620946 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 859 343 260 39 0 chr5 35916340 35916417 -116620842 - RSINE1 SINE B4 -83 82 3 5 859 683 124 107 0 chr5 35917040 35917161 -116620098 + B1_Mur1 SINE Alu 9 142 -7 5 859 543 268 134 13 chr5 35918099 35918330 -116618929 + RMER5 LTR ERV1 33 291 -243 5 859 4260 60 46 9 chr5 35918338 35918878 -116618381 + LTRIS2 LTR ERV1 5 564 0 5 859 294 253 250 12 chr5 35918920 35919080 -116618179 + RMER5 LTR ERV1 196 393 -141 5 859 363 253 11 11 chr5 35919099 35919187 -116618072 + RMER5 LTR ERV1 447 534 0 5 859 813 169 7 7 chr5 35920423 35920560 -116616699 + B1_Mus1 SINE Alu 11 147 -1 5 859 561 154 0 0 chr5 35920705 35920815 -116616444 + (CA)n Simple_repeat Simple_repeat 1 110 0 5 859 211 231 77 0 chr5 35920873 35920925 -116616334 - B1F2 SINE Alu -88 61 6 5 859 1473 89 16 0 chr5 35921896 35922087 -116615172 - B2_Mm2 SINE B2 0 195 2 5 859 214 234 151 58 chr5 35923318 35923404 -116613855 - PB1D10 SINE Alu -14 103 10 5 859 188 86 0 28 chr5 35924739 35924775 -116612484 + (TTA)n Simple_repeat Simple_repeat 1 35 0 5 859 219 325 0 38 chr5 35924792 35924872 -116612387 - RSINE1 SINE B4 0 165 89 5 859 189 107 0 0 chr5 35925650 35925678 -116611581 + (CGGGG)n Simple_repeat Simple_repeat 3 30 0 5 859 384 267 24 24 chr5 35926327 35926450 -116610809 - MER57A-int LTR ERV1 -261 5926 5804 5 859 831 53 0 17 chr5 35926936 35927051 -116610208 + B1_Mm SINE Alu 35 147 0 5 859 180 111 0 0 chr5 35927051 35927078 -116610181 + (GAA)n Simple_repeat Simple_repeat 2 28 0 5 859 238 292 56 0 chr5 35927110 35927199 -116610060 - PB1D10 SINE Alu -7 110 17 5 859 192 125 0 0 chr5 35927218 35927250 -116610009 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 5 859 707 214 179 6 chr5 35927275 35927454 -116609805 - B3 SINE B2 -6 210 1 5 859 380 195 61 0 chr5 35927487 35927569 -116609690 - MTEa LTR MaLR 0 379 293 5 859 320 336 74 20 chr5 35927599 35927748 -116609511 - RSINE1 SINE B4 0 165 9 5 859 654 224 7 52 chr5 35927810 35927965 -116609294 - RSINE1 SINE B4 -16 149 2 5 859 465 285 58 52 chr5 35927969 35928143 -116609116 - MTEa LTR MaLR -204 175 1 5 859 1450 122 52 0 chr5 35928419 35928632 -116608627 - URR1B DNA MER1_type -1 224 1 5 859 2454 78 15 9 chr5 35928679 35929004 -116608255 + ORR1A2 LTR MaLR 1 327 0 5 859 576 283 112 0 chr5 35929263 35929450 -116607809 - B3 SINE B2 -5 211 4 5 859 524 253 68 54 chr5 35929913 35930090 -116607169 + B3 SINE B2 7 175 -20 5 859 958 191 48 0 chr5 35932630 35932819 -116604440 - RMER20A LTR ERVK 0 516 319 5 859 3990 152 29 54 chr5 35932819 35933397 -116603862 - RLTR25A LTR ERVK 0 1028 466 5 859 1393 66 27 11 chr5 35933397 35933582 -116603677 - B2_Mm2 SINE B2 -7 188 1 5 859 3990 126 10 38 chr5 35933582 35933859 -116603400 - RLTR25A LTR ERVK -638 465 190 5 859 22 0 0 0 chr5 35934159 35934181 -116603078 + GC_rich Low_complexity Low_complexity 1 22 0 5 859 429 273 70 6 chr5 35935125 35935278 -116601981 - B3A SINE B2 -20 196 35 5 859 317 312 87 8 chr5 35935373 35935499 -116601760 - ORR1E LTR MaLR -6 353 218 5 859 31 26 0 0 chr5 35935905 35935943 -116601316 + AT_rich Low_complexity Low_complexity 1 38 0 5 859 252 304 14 0 chr5 35936043 35936112 -116601147 - ID4_ SINE ID -13 70 1 5 859 818 151 20 33 chr5 35940467 35940618 -116596641 - B1_Mur3 SINE Alu 0 149 1 5 859 518 269 18 59 chr5 35940468 35940638 -116596621 - ID_B1 SINE B4 0 224 62 5 859 1056 206 193 10 chr5 35941322 35941625 -116595634 - ORR1D1 LTR MaLR 0 378 13 5 859 1202 54 0 13 chr5 35941628 35941777 -116595482 - B1_Mus2 SINE Alu 0 147 1 5 859 1037 201 49 20 chr5 35943641 35943673 -116593586 + B3 SINE B2 2 33 -183 5 859 1329 43 0 0 chr5 35943673 35943837 -116593422 + (TCTCC)n Simple_repeat Simple_repeat 3 166 0 5 859 1037 201 49 20 chr5 35943837 35944007 -116593252 + B3 SINE B2 34 209 -7 5 859 468 0 0 0 chr5 35946929 35946981 -116590278 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 859 408 20 0 0 chr5 35946981 35947029 -116590230 + (GA)n Simple_repeat Simple_repeat 1 49 0 5 859 210 323 118 0 chr5 35947475 35947568 -116589691 + PB1D10 SINE Alu 1 104 -13 5 859 271 208 83 29 chr5 35947569 35947683 -116589576 + B1_Mus1 SINE Alu 2 119 -1 5 859 217 200 0 0 chr5 35948827 35948867 -116588392 + MIRc SINE MIR 85 124 -144 5 859 183 162 0 0 chr5 35950481 35950518 -116586741 + G-rich Low_complexity Low_complexity 1 37 0 5 859 504 228 40 8 chr5 35956002 35956126 -116581133 + Lx8 LINE L1 7205 7332 -141 5 859 528 185 24 12 chr5 35956797 35956961 -116580298 + (TG)n Simple_repeat Simple_repeat 1 166 0 5 859 450 0 0 0 chr5 35957654 35957704 -116579555 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 859 347 238 0 0 chr5 35957708 35957792 -116579467 - B4A SINE B4 -208 84 1 5 859 740 169 29 14 chr5 35957864 35958002 -116579257 - B1_Mur4 SINE Alu 0 150 11 5 859 1125 215 10 5 chr5 35958634 35958840 -116578419 - B3 SINE B2 -6 210 4 5 859 346 299 22 7 chr5 35961038 35961173 -116576086 + (TGGA)n Simple_repeat Simple_repeat 1 137 0 5 859 203 0 37 0 chr5 35961410 35961437 -116575822 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 859 518 133 9 0 chr5 35961437 35961550 -116575709 + (GA)n Simple_repeat Simple_repeat 2 115 0 5 859 313 266 97 124 chr5 35962260 35962538 -116574721 + ORR1E LTR MaLR 89 377 -2 5 859 753 308 112 6 chr5 35962734 35963064 -116574195 + MLT1B LTR MaLR 8 372 -18 5 859 1965 133 136 3 chr5 35965524 35965847 -116571412 - ORR1B2 LTR MaLR 0 367 2 5 859 327 85 0 0 chr5 35967410 35967457 -116569802 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 859 1081 294 80 52 chr5 35968079 35968595 -116568664 + MT2A LTR ERVL 3 532 -1 5 859 2134 133 12 0 chr5 35969313 35969643 -116567616 - MTC LTR MaLR -82 339 6 5 859 184 262 48 32 chr5 35969908 35969971 -116567288 + L2 LINE L2 80 143 -3276 5 859 375 299 17 8 chr5 35970278 35970396 -116566863 - MER5A1 DNA MER1_type -47 119 1 5 859 567 153 0 0 chr5 35972004 35972102 -116565157 + (TATG)n Simple_repeat Simple_repeat 3 100 0 6 859 690 227 153 0 chr5 35972102 35972278 -116564981 - B3 SINE B2 -13 203 1 6 859 354 217 14 0 chr5 35972696 35972765 -116564494 - ID4 SINE ID -9 74 5 6 859 366 264 132 20 chr5 35972850 35973001 -116564258 - HAL1 LINE L1 -760 1747 1580 6 859 531 252 125 7 chr5 35973161 35973305 -116563954 + RSINE1 SINE B4 3 163 -2 6 859 231 200 0 0 chr5 35973306 35973351 -116563908 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 859 1072 202 78 39 chr5 35973388 35973722 -116563537 - RLTR15 LTR ERVK 0 359 13 6 859 369 0 0 0 chr5 35973722 35973763 -116563496 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 859 306 0 0 0 chr5 35973763 35973796 -116563463 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 859 590 271 74 29 chr5 35973811 35973986 -116563273 - B3A SINE B2 -15 183 1 6 859 249 139 0 0 chr5 35974876 35974919 -116562340 + (GGA)n Simple_repeat Simple_repeat 1 43 0 6 859 605 288 29 51 chr5 35976537 35976804 -116560455 + B4A SINE B4 2 269 -23 6 859 260 49 0 47 chr5 35977152 35977195 -116560064 + (TAA)n Simple_repeat Simple_repeat 3 43 0 6 859 399 41 0 0 chr5 35977263 35977312 -116559947 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 859 1279 207 133 30 chr5 35977547 35977916 -116559343 + MTD LTR MaLR 13 419 0 6 859 362 277 32 32 chr5 35978433 35978556 -116558703 - MLT1K LTR MaLR -13 582 460 6 859 459 0 0 0 chr5 35979067 35979118 -116558141 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 859 1110 84 28 0 chr5 35981189 35981332 -116555927 - B1_Mus1 SINE Alu -1 147 1 6 859 507 33 0 0 chr5 35982617 35982678 -116554581 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 6 859 1550 194 248 81 chr5 35983083 35983538 -116553721 - MT2A LTR ERVL -2 531 1 6 859 815 224 0 68 chr5 35983896 35984073 -116553186 - RSINE1 SINE B4 0 165 1 6 859 314 291 90 0 chr5 35984325 35984459 -116552800 + L1MC LINE L1 4463 4608 -1538 6 859 353 365 69 0 chr5 35986028 35986231 -116551028 + MIRb SINE MIR 39 255 -13 6 859 228 333 9 66 chr5 35987434 35987540 -116549719 + ORR1E LTR MaLR 74 173 -186 6 859 333 0 0 0 chr5 35988500 35988537 -116548722 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 859 579 29 0 0 chr5 35988537 35988605 -116548654 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 859 368 236 38 0 chr5 35988652 35988759 -116548500 - ORR1E LTR MaLR -252 118 1 6 859 386 114 14 0 chr5 35989022 35989092 -116548167 + (TG)n Simple_repeat Simple_repeat 1 71 0 6 859 496 297 62 0 chr5 35989093 35989238 -116548021 - RSINE1 SINE B4 -6 159 6 6 859 226 229 53 22 chr5 35990098 35990194 -116547065 + MIR SINE MIR 42 137 -131 6 859 563 41 0 0 chr5 35991982 35992055 -116545204 + ORR1A0 LTR MaLR 1 73 -273 6 859 711 0 11 0 chr5 35992050 35992138 -116545121 + ORR1A0 LTR MaLR 258 346 0 6 859 14706 47 8 1 chr5 35992138 35993917 -116543342 + ORR1A0-int LTR MaLR 1 1792 0 6 859 3041 35 3 0 chr5 35993917 35994262 -116542997 + ORR1A0 LTR MaLR 1 346 0 6 859 359 100 0 32 chr5 35994268 35994330 -116542929 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 6 859 384 22 0 0 chr5 35995945 35995990 -116541269 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 859 355 315 65 0 chr5 35996148 35996256 -116541003 - PB1D10 SINE Alu 0 117 3 6 859 423 0 0 0 chr5 35996293 35996340 -116540919 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 859 302 287 11 0 chr5 35996346 35996433 -116540826 - MIRc SINE MIR -62 206 119 6 859 786 67 0 0 chr5 35997335 35997440 -116539819 + (TCCC)n Simple_repeat Simple_repeat 2 106 0 6 859 330 308 108 94 chr5 35997690 35998053 -116539206 + MLT1C LTR MaLR 48 460 -7 6 859 297 308 74 15 chr5 35998665 35998800 -116538459 + RSINE1 SINE B4 4 146 -19 6 859 942 206 85 0 chr5 35998843 35999042 -116538217 - B3 SINE B2 0 216 1 6 859 275 328 105 56 chr5 35999056 35999596 -116537663 + L1MD LINE L1 3031 3599 -2547 6 859 605 250 21 7 chr5 35999773 35999918 -116537341 + B1F SINE Alu 1 147 -2 6 859 286 292 14 0 chr5 35999927 35999999 -116537260 + ID4 SINE ID 2 74 -9 6 859 266 50 48 32 chr5 36000137 36000199 -116537060 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 1 859 322 297 145 37 chr5 36000209 36000450 -116536809 + L1MD LINE L1 4012 4278 -1868 2 859 230 342 97 19 chr5 36002131 36002286 -116534973 - RMER21A LTR ERV1 -42 905 739 3 859 21 0 0 0 chr5 36002692 36002713 -116534546 + AT_rich Low_complexity Low_complexity 1 21 0 4 859 205 354 192 0 chr5 36004641 36004740 -116532519 - L4 LINE RTE -204 1825 1708 5 859 261 246 22 0 chr5 36005342 36005476 -116531783 + (TGGA)n Simple_repeat Simple_repeat 2 138 0 6 859 564 259 21 3 chr5 36005494 36005789 -116531470 + (TGGA)n Simple_repeat Simple_repeat 1 300 0 6 859 1076 241 5 0 chr5 36005857 36006264 -116530995 + (TGGA)n Simple_repeat Simple_repeat 1 409 0 7 859 192 152 0 0 chr5 36006264 36006297 -116530962 + (TGGG)n Simple_repeat Simple_repeat 2 34 0 8 859 809 179 20 7 chr5 36009131 36009277 -116527982 - B1_Mur1 SINE Alu -1 148 1 9 859 306 0 0 0 chr5 36009650 36009684 -116527575 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 859 244 307 31 92 chr5 36010311 36010455 -116526804 + MIRc SINE MIR 15 160 -108 1 859 245 309 0 14 chr5 36011336 36011405 -116525854 + MIRc SINE MIR 81 148 -120 1 859 246 333 125 18 chr5 36011614 36011955 -116525304 + MLT1C LTR MaLR 3 378 -12 1 859 228 67 0 0 chr5 36012471 36012501 -116524758 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 859 483 354 27 22 chr5 36014532 36014717 -116522542 + MIRb SINE MIR 22 207 -61 1 859 259 279 63 0 chr5 36016986 36017065 -116520194 + MIRc SINE MIR 84 167 -101 1 859 1215 148 119 0 chr5 36017490 36017692 -116519567 + URR1A DNA MER1_type 1 226 0 1 859 531 45 0 0 chr5 36019370 36019436 -116517823 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 859 284 305 31 10 chr5 36021415 36021511 -116515748 + MIR3 SINE MIR 74 171 -37 1 859 21 89 0 0 chr5 36022162 36022218 -116515041 + GC_rich Low_complexity Low_complexity 1 56 0 2 859 186 43 0 0 chr5 36023035 36023058 -116514201 + (GTGTG)n Simple_repeat Simple_repeat 3 25 0 2 859 2656 254 76 21 chr5 36024534 36024548 -116512711 - Lx8 LINE L1 -573 6900 6888 2 859 2521 154 107 44 chr5 36024548 36025045 -116512214 - RLTR24 LTR ERV1 0 529 2 2 859 2656 254 76 21 chr5 36025045 36025841 -116511418 - Lx8 LINE L1 -586 6887 6045 2 859 1286 292 84 54 chr5 36025894 36026612 -116510647 - L1MB8 LINE L1 -26 6152 5414 2 859 487 260 49 11 chr5 36026776 36026959 -116510300 - L1MB8 LINE L1 -1090 5056 4867 2 859 258 329 58 40 chr5 36027432 36027606 -116509653 - Lx8 LINE L1 -8 7465 7289 2 859 286 295 42 2 chr5 36027705 36027810 -116509449 - B1F SINE Alu -10 110 1 2 859 543 284 130 0 chr5 36027993 36028319 -116508940 - L1MA6 LINE L1 -254 6046 5679 2 859 411 56 0 0 chr5 36028394 36028448 -116508811 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 859 294 325 111 46 chr5 36028790 36029006 -116508253 + MLT1A LTR MaLR 73 302 -72 2 859 2288 136 16 8 chr5 36031562 36031932 -116505327 - ORR1B1 LTR MaLR -21 373 1 3 859 493 343 39 6 chr5 36032645 36032824 -116504435 + B4A SINE B4 5 189 -103 3 859 369 0 0 0 chr5 36032853 36032894 -116504365 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 859 324 70 0 0 chr5 36035132 36035175 -116502084 + (CACG)n Simple_repeat Simple_repeat 1 43 0 3 859 209 319 0 0 chr5 36035178 36035250 -116502009 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 859 207 302 81 11 chr5 36035544 36035631 -116501628 + MIRb SINE MIR 86 178 -90 3 859 513 0 0 0 chr5 36036650 36036707 -116500552 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 859 1099 99 58 0 chr5 36040557 36040728 -116496531 - B2_Mm2 SINE B2 0 195 15 3 859 969 158 0 0 chr5 36040757 36040896 -116496363 - B1_Mus1 SINE Alu -9 139 1 3 859 219 351 42 11 chr5 36043698 36043793 -116493466 + L2b LINE L2 3272 3369 -6 3 859 220 365 0 12 chr5 36044174 36044260 -116492999 + (TGGG)n Simple_repeat Simple_repeat 2 86 0 4 859 296 242 11 0 chr5 36044274 36044369 -116492890 + (TGGA)n Simple_repeat Simple_repeat 3 98 0 4 860 1894 181 94 16 chr5 36044865 36045246 -116492013 + MTD LTR MaLR 2 412 -7 4 860 259 328 48 0 chr5 36046816 36046941 -116490318 + L1M4 LINE L1 2687 2817 -3329 4 860 266 318 15 15 chr5 36047065 36047196 -116490063 + L1M4 LINE L1 2787 2917 -3229 4 860 620 223 5 2 chr5 36047230 36047359 -116489900 + B3 SINE B2 2 133 -60 4 860 1344 126 13 51 chr5 36048028 36048262 -116488997 - URR1B DNA MER1_type 0 225 1 4 860 261 292 15 0 chr5 36050643 36050708 -116486551 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 4 860 558 43 0 0 chr5 36050708 36050777 -116486482 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 860 211 314 67 19 chr5 36050777 36050813 -116486446 + BC1_Mm scRNA scRNA 79 113 -39 4 860 534 206 96 96 chr5 36051128 36051305 -116485954 + B3 SINE B2 40 216 0 4 860 375 339 51 0 chr5 36051322 36051337 -116485922 + ID SINE ID 66 86 -138 5 860 355 319 69 0 chr5 36051337 36051453 -116485806 + B1F2 SINE Alu 1 124 -25 5 860 759 237 101 20 chr5 36054126 36054324 -116482935 + B3 SINE B2 2 215 -1 5 860 191 204 23 0 chr5 36058320 36058364 -116478895 + L4 LINE RTE 1785 1829 -200 5 860 567 146 39 0 chr5 36060478 36060581 -116476678 - B1_Mus2 SINE Alu -2 145 39 5 860 235 155 16 49 chr5 36060532 36060593 -116476666 - 4.5SRNA scRNA scRNA -10 84 26 5 860 293 244 154 0 chr5 36060605 36060683 -116476576 + RMER30 DNA MER1_type 98 187 -15 5 860 194 280 116 25 chr5 36061847 36061968 -116475291 + MIRb SINE MIR 12 143 -125 5 860 222 37 0 0 chr5 36062854 36062881 -116474378 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 5 860 271 273 25 25 chr5 36063614 36063693 -116473566 + MLT1A LTR MaLR 24 102 -272 5 860 619 242 0 0 chr5 36063698 36063818 -116473441 + PB1D7 SINE Alu 1 120 0 6 860 417 320 12 64 chr5 36064861 36065111 -116472148 - HAL1-2a_MD LINE L1 -462 2562 2326 6 860 325 242 70 10 chr5 36065119 36065230 -116472029 + L1M5 LINE L1 5611 5727 -437 6 860 261 289 0 73 chr5 36065247 36065329 -116471930 + RSINE1 SINE B4 5 80 -85 6 860 250 282 0 40 chr5 36067480 36067554 -116469705 + GA-rich Low_complexity Low_complexity 4 74 0 6 860 1299 105 10 10 chr5 36067691 36067883 -116469376 + B2_Mm2 SINE B2 2 193 -2 6 860 289 235 29 0 chr5 36070054 36070122 -116467137 + MIRb SINE MIR 119 188 -80 6 860 252 282 155 95 chr5 36070475 36070675 -116466584 + MLT1B LTR MaLR 178 389 -1 6 860 396 103 0 0 chr5 36072476 36072534 -116464725 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 860 238 284 61 31 chr5 36072917 36073015 -116464244 + MIR3 SINE MIR 90 190 -18 6 860 228 35 0 0 chr5 36073999 36074028 -116463231 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 860 881 162 7 39 chr5 36074036 36074178 -116463081 + B1_Mur3 SINE Alu 1 139 -10 7 860 495 0 0 0 chr5 36074178 36074233 -116463026 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 7 860 881 162 7 39 chr5 36074233 36074244 -116463015 + B1_Mur3 SINE Alu 140 149 0 7 860 995 103 14 7 chr5 36076034 36076180 -116461079 + B1_Mus1 SINE Alu 2 148 0 7 860 261 230 0 0 chr5 36077780 36077854 -116459405 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 7 860 393 281 39 8 chr5 36077908 36078037 -116459222 + L1MC3 LINE L1 6852 6984 -801 7 860 930 176 228 151 chr5 36078038 36078124 -116459135 + MT2A LTR ERVL 3 88 -445 7 860 1026 114 77 28 chr5 36078124 36078305 -116458954 - B2_Mm2 SINE B2 -1 194 5 7 860 930 176 228 151 chr5 36078305 36078687 -116458572 + MT2A LTR ERVL 89 507 -26 7 860 195 121 17 33 chr5 36078786 36078846 -116458413 + T-rich Low_complexity Low_complexity 2 60 0 7 860 707 165 82 8 chr5 36078850 36078984 -116458275 - B1_Mur4 SINE Alu -5 145 2 7 860 1509 166 81 22 chr5 36078984 36079305 -116457954 + ORR1D1 LTR MaLR 28 367 -7 8 860 246 62 0 0 chr5 36080558 36080590 -116456669 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 8 860 607 226 179 11 chr5 36080744 36080923 -116456336 + MTD LTR MaLR 1 209 -210 8 860 647 160 94 16 chr5 36080933 36081060 -116456199 + B1_Mur2 SINE Alu 12 148 -1 8 860 499 242 171 2 chr5 36081049 36081230 -116456029 + MTD LTR MaLR 182 412 -7 8 860 250 252 52 51 chr5 36082155 36082275 -116454984 - MIRc SINE MIR -87 189 63 8 860 256 27 0 0 chr5 36084955 36084992 -116452267 - B2_Mm2 SINE B2 -22 173 137 8 860 215 203 0 86 chr5 36084981 36085051 -116452208 - B3 SINE B2 -107 109 46 8 860 1146 117 47 0 chr5 36085069 36085240 -116452019 - B2_Mm1t SINE B2 -14 179 1 8 860 245 146 0 0 chr5 36085243 36085284 -116451975 + PB1D9 SINE Alu 14 54 -66 8 860 254 0 0 159 chr5 36085286 36085412 -116451847 + (CAGAG)n Simple_repeat Simple_repeat 5 110 0 8 860 441 186 78 49 chr5 36085415 36085503 -116451756 + B1_Mur2 SINE Alu 42 136 -13 9 860 221 0 35 0 chr5 36085503 36085532 -116451727 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 9 860 441 186 78 49 chr5 36085532 36085545 -116451714 + B1_Mur2 SINE Alu 137 146 -3 9 860 226 235 29 14 chr5 36085904 36085973 -116451286 + RSINE1 SINE B4 92 161 -4 9 860 219 303 146 0 chr5 36087306 36087395 -116449864 - PB1D9 SINE Alu 0 120 19 9 860 447 296 19 23 chr5 36087410 36087565 -116449694 - PB1 SINE Alu 0 149 1 9 860 739 239 33 28 chr5 36090009 36090190 -116447069 + B3A SINE B2 1 182 -16 9 860 222 324 0 0 chr5 36090861 36090935 -116446324 - L2c LINE L2 -236 3151 3078 9 860 183 322 161 0 chr5 36090960 36091078 -116446181 - L2c LINE L2 -599 2820 2684 9 860 186 182 30 15 chr5 36091305 36091372 -116445887 + (TGGG)n Simple_repeat Simple_repeat 4 71 0 9 860 181 238 25 0 chr5 36091445 36091525 -116445734 + (TGGA)n Simple_repeat Simple_repeat 2 83 0 9 860 432 128 102 0 chr5 36091841 36091941 -116445318 - RMER4A LTR ERVK -64 402 309 9 860 2492 121 58 95 chr5 36091944 36092390 -116444869 - RMER4A LTR ERVK 0 466 38 1 860 216 86 0 0 chr5 36092390 36092425 -116444834 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 860 2492 121 58 95 chr5 36092425 36092462 -116444797 - RMER4A LTR ERVK -429 37 1 1 860 1233 68 0 0 chr5 36092540 36092688 -116444571 - B1_Mus1 SINE Alu 0 148 1 1 860 203 0 37 0 chr5 36092697 36092724 -116444535 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 1 860 235 323 0 0 chr5 36093896 36093961 -116443298 + MLT1B LTR MaLR 10 74 -316 1 860 730 275 54 69 chr5 36094016 36094205 -116443054 + B4 SINE B4 7 194 -98 1 860 1338 142 31 27 chr5 36094205 36094429 -116442830 + URR1B DNA MER1_type 1 225 0 1 860 730 275 54 69 chr5 36094429 36094516 -116442743 + B4 SINE B4 195 279 -13 1 860 841 270 46 33 chr5 36094546 36094797 -116442462 - MTE2b LTR MaLR -41 338 87 1 860 1450 78 5 20 chr5 36094797 36094993 -116442266 + B2_Mm1a SINE B2 1 193 0 1 860 807 306 39 92 chr5 36094993 36095098 -116442161 - MTE2b LTR MaLR -293 86 1 1 860 332 312 142 66 chr5 36095100 36095388 -116441871 + MLT1B LTR MaLR 67 376 -14 1 860 658 152 223 0 chr5 36095760 36095872 -116441387 - B1_Mur4 SINE Alu -13 137 1 1 860 223 225 0 0 chr5 36096810 36096850 -116440409 + MIRc SINE MIR 121 160 -108 1 860 481 103 0 40 chr5 36100000 36100101 -116437158 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 860 191 225 0 0 chr5 36102846 36102886 -116434373 + MIRm SINE MIR 115 154 -122 1 860 342 0 0 0 chr5 36103115 36103153 -116434106 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 860 999 278 78 6 chr5 36103156 36103478 -116433781 - MLT1B LTR MaLR -21 369 25 1 860 263 272 49 0 chr5 36103843 36103924 -116433335 - L2a LINE L2 0 3426 3342 1 860 1240 173 9 14 chr5 36104043 36104260 -116432999 + B3 SINE B2 1 216 0 1 860 226 295 0 16 chr5 36105898 36105960 -116431299 - MIR SINE MIR -164 98 38 1 860 1254 133 108 0 chr5 36108028 36108231 -116429028 - URR1B DNA MER1_type 0 225 1 1 860 267 239 18 9 chr5 36108380 36108490 -116428769 + GA-rich Low_complexity Low_complexity 3 113 0 1 860 436 301 151 26 chr5 36108963 36109195 -116428064 + MLT1D LTR MaLR 39 299 -206 1 860 377 353 91 30 chr5 36109744 36110042 -116427217 - MLT1D LTR MaLR -182 323 8 1 860 240 219 109 45 chr5 36110431 36110541 -116426718 - Charlie1b DNA MER1_type -56 467 351 1 860 355 356 60 0 chr5 36110577 36110726 -116426533 - Charlie1b DNA MER1_type -252 271 114 1 860 237 359 30 30 chr5 36111051 36111183 -116426076 - MTE-int LTR MaLR -42 1538 1407 1 860 739 352 129 62 chr5 36111244 36112135 -116425124 - MTE-int LTR MaLR -547 1033 83 1 860 252 280 63 99 chr5 36112197 36112308 -116424951 - ORR1D2 LTR MaLR -7 363 257 1 860 946 210 278 27 chr5 36112442 36112741 -116424518 + MTE2b LTR MaLR 4 377 -2 1 860 1947 142 44 10 chr5 36112855 36113193 -116424066 - ORR1B2 LTR MaLR -19 360 1 1 860 277 340 32 0 chr5 36113225 36113319 -116423940 - Charlie1b DNA MER1_type -421 102 6 1 860 484 270 117 0 chr5 36114237 36114374 -116422885 + MTEa LTR MaLR 1 153 -226 1 860 189 352 102 34 chr5 36115191 36115338 -116421921 - L2b LINE L2 -94 3281 3125 1 860 579 291 208 27 chr5 36117777 36118079 -116419180 - L1MB3 LINE L1 0 6183 5818 1 860 661 214 0 0 chr5 36118079 36118191 -116419068 - PB1D10 SINE Alu -5 112 1 1 860 579 291 208 27 chr5 36118191 36118411 -116418848 - L1MB3 LINE L1 -366 5817 5566 1 860 348 226 317 0 chr5 36119021 36119199 -116418060 - MLT1A0 LTR MaLR -103 271 37 1 860 220 252 148 94 chr5 36119764 36119796 -116417463 + B4A SINE B4 68 224 -68 1 860 428 188 239 0 chr5 36119796 36119913 -116417346 + B1_Mur2 SINE Alu 4 148 -1 1 860 410 163 42 14 chr5 36120443 36120586 -116416673 + (TCTG)n Simple_repeat Simple_repeat 4 150 0 1 860 448 268 0 0 chr5 36120586 36120709 -116416550 + (TG)n Simple_repeat Simple_repeat 1 123 0 1 860 229 309 36 36 chr5 36121292 36121376 -116415883 - MLT1A1 LTR MaLR -254 154 71 1 860 236 140 17 50 chr5 36121548 36121594 -116415665 + T-rich Low_complexity Low_complexity 16 60 0 1 860 1169 75 0 14 chr5 36121594 36121742 -116415517 - B1_Mus1 SINE Alu -2 146 1 1 860 236 140 17 50 chr5 36121742 36121755 -116415504 + T-rich Low_complexity Low_complexity 3 15 0 1 860 4244 65 2 0 chr5 36124248 36124759 -116412500 - RLTR1B LTR ERV1 0 512 1 1 860 295 259 67 33 chr5 36125617 36125737 -116411522 + MER112 DNA MER1_type 14 137 -124 1 860 234 86 51 17 chr5 36125814 36125873 -116411386 + (CAAA)n Simple_repeat Simple_repeat 2 62 0 1 860 1190 209 0 9 chr5 36126324 36126541 -116410718 - B3 SINE B2 -1 215 1 1 860 252 298 81 73 chr5 36126595 36126841 -116410418 - MLT1I LTR MaLR -102 309 62 1 860 2590 112 5 0 chr5 36126881 36127265 -116409994 + ORR1B1 LTR MaLR 1 386 -8 1 860 231 123 0 0 chr5 36129160 36129203 -116408056 - MIRc SINE MIR -124 152 110 1 860 363 301 59 0 chr5 36129332 36129468 -116407791 + MER20 DNA MER1_type 1 144 -75 1 860 2470 130 73 8 chr5 36129969 36130364 -116406895 - MTC LTR MaLR 0 421 1 1 860 470 333 15 5 chr5 36130762 36130961 -116406298 + L1M4 LINE L1 5016 5216 -930 1 860 570 240 267 6 chr5 36132071 36132247 -116405012 - ID_B1 SINE B4 -1 223 2 1 860 258 251 21 88 chr5 36133286 36133478 -116403781 + (TGGG)n Simple_repeat Simple_repeat 2 180 0 1 860 263 324 51 29 chr5 36135924 36136112 -116401147 - L1MC1 LINE L1 -111 6233 6044 1 860 361 136 0 0 chr5 36136153 36136212 -116401047 - B1_Mur4 SINE Alu -49 101 43 1 860 358 298 60 0 chr5 36136245 36136396 -116400863 - L1MC1 LINE L1 -387 5946 5787 1 860 386 186 57 0 chr5 36138372 36138442 -116398817 - ID4_ SINE ID -9 74 1 1 860 443 307 119 27 chr5 36139358 36139693 -116397566 - MER89 LTR ERV1 -187 372 7 1 860 786 252 94 22 chr5 36143083 36143306 -116393953 + B4A SINE B4 54 292 0 1 860 349 143 12 23 chr5 36143310 36143396 -116393863 + GA-rich Low_complexity Low_complexity 3 87 0 1 860 249 33 0 0 chr5 36144600 36144630 -116392629 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 1 860 221 279 0 47 chr5 36145923 36145987 -116391272 + C-rich Low_complexity Low_complexity 1 61 0 1 860 390 191 134 94 chr5 36146980 36147107 -116390152 - MTEb LTR MaLR -245 134 3 1 860 215 227 0 0 chr5 36147647 36147691 -116389568 + (TCTG)n Simple_repeat Simple_repeat 4 47 0 1 860 323 338 27 33 chr5 36147701 36147851 -116389408 + L1MEf LINE L1 1123 1271 -4929 1 860 249 216 65 39 chr5 36148209 36148286 -116388973 + L1MB8 LINE L1 6042 6120 -58 1 860 342 324 9 18 chr5 36148462 36148572 -116388687 + PB1D10 SINE Alu 1 109 -8 1 860 1120 270 89 6 chr5 36148630 36148954 -116388305 + ORR1E LTR MaLR 6 356 -3 1 860 256 279 87 0 chr5 36149260 36149364 -116387895 - MIR SINE MIR -86 176 64 1 860 1771 124 33 3 chr5 36149819 36150126 -116387133 - RMER4A LTR ERVK -150 316 1 1 860 575 279 19 0 chr5 36150270 36150424 -116386835 + ID_B1 SINE B4 67 223 -1 1 860 389 310 161 9 chr5 36150433 36150651 -116386608 + MER2 DNA MER2_type 90 340 -5 1 860 991 129 7 0 chr5 36152134 36152273 -116384986 + B1_Mus2 SINE Alu 1 140 -7 1 860 300 27 0 0 chr5 36152276 36152313 -116384946 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 860 246 296 0 0 chr5 36152829 36152917 -116384342 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 860 228 228 18 0 chr5 36152923 36152980 -116384279 + (CATG)n Simple_repeat Simple_repeat 3 60 0 1 860 1396 127 26 43 chr5 36155271 36155501 -116381758 - URR1A DNA MER1_type 0 226 1 1 860 453 172 32 21 chr5 36155913 36156008 -116381251 - ID_B1 SINE B4 0 224 129 1 860 268 278 26 44 chr5 36156008 36156025 -116381234 - PB1D9 SINE Alu 0 119 10 1 860 217 224 52 0 chr5 36158021 36158079 -116379180 + CT-rich Low_complexity Low_complexity 4 64 0 1 860 357 24 0 0 chr5 36158551 36158593 -116378666 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 860 233 326 34 23 chr5 36159337 36159352 -116377907 + MT2B LTR ERVL 151 166 -435 1 860 301 321 94 0 chr5 36159352 36159458 -116377801 + PB1D10 SINE Alu 1 116 -1 1 860 242 316 26 0 chr5 36159458 36159534 -116377725 + ID2 SINE ID 3 80 -3 1 860 617 69 0 11 chr5 36160263 36160351 -116376908 + (GGA)n Simple_repeat Simple_repeat 1 87 0 1 860 313 340 35 14 chr5 36161063 36161206 -116376053 + MIRb SINE MIR 33 178 -90 1 860 438 302 120 62 chr5 36161955 36162230 -116375029 - B4A SINE B4 0 292 2 1 860 365 316 0 16 chr5 36163288 36163427 -116373832 - L1MD LINE L1 -852 5294 5158 1 860 189 0 0 0 chr5 36163617 36163638 -116373621 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 860 267 217 34 42 chr5 36163825 36163937 -116373322 + RLTR20B2 LTR ERVK 97 212 -351 1 860 216 200 0 0 chr5 36164643 36164703 -116372556 + CT-rich Low_complexity Low_complexity 2 61 0 1 860 652 280 42 5 chr5 36164711 36164901 -116372358 - B3A SINE B2 0 198 2 1 860 1123 68 7 14 chr5 36166235 36166383 -116370876 - B1_Mus2 SINE Alu 0 147 1 1 860 729 132 0 0 chr5 36166841 36166985 -116370274 + (CA)n Simple_repeat Simple_repeat 1 144 0 1 860 381 310 52 84 chr5 36167316 36167471 -116369788 + RSINE1 SINE B4 1 150 -15 1 860 873 252 85 138 chr5 36168618 36169018 -116368241 - MTE2a LTR MaLR 0 379 1 1 860 265 325 50 66 chr5 36169032 36169213 -116368046 - MER31B LTR ERV1 -235 231 54 1 860 243 272 0 0 chr5 36171820 36171901 -116365358 + GA-rich Low_complexity Low_complexity 1 81 0 1 860 247 135 18 63 chr5 36172021 36172132 -116365127 + (CCCA)n Simple_repeat Simple_repeat 2 107 0 1 860 285 93 48 63 chr5 36172217 36172343 -116364916 + (CCCA)n Simple_repeat Simple_repeat 3 126 0 1 860 293 341 58 29 chr5 36174544 36174639 -116362620 - MLT1B LTR MaLR -86 304 206 1 860 387 0 0 0 chr5 36174639 36174682 -116362577 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 860 293 303 328 15 chr5 36174682 36174837 -116362422 - MLT1B LTR MaLR -185 205 3 1 861 191 105 53 0 chr5 36176179 36176217 -116361042 + (CATG)n Simple_repeat Simple_repeat 1 40 0 2 861 432 237 25 17 chr5 36176818 36176938 -116360321 - ID_B1 SINE B4 -102 122 2 2 861 244 315 21 77 chr5 36178351 36178513 -116358746 + MIRc SINE MIR 20 181 -81 2 861 435 83 0 0 chr5 36178976 36179036 -116358223 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 861 2384 124 82 6 chr5 36180144 36180509 -116356750 - ORR1B1 LTR MaLR 0 394 2 2 861 216 89 0 67 chr5 36181719 36181779 -116355480 + T-rich Low_complexity Low_complexity 2 57 0 2 861 353 282 78 0 chr5 36182935 36183077 -116354182 - MIR SINE MIR -11 251 99 2 861 825 171 0 0 chr5 36184934 36185104 -116352155 + (TGAA)n Simple_repeat Simple_repeat 1 170 0 2 861 329 276 0 6 chr5 36185125 36185293 -116351966 + (TGAG)n Simple_repeat Simple_repeat 4 170 0 2 861 212 289 148 19 chr5 36186143 36186298 -116350961 - MIRc SINE MIR -75 193 19 2 861 332 344 23 39 chr5 36186616 36186641 -116350618 + L1MEg LINE L1 1865 1891 -4193 2 861 1052 80 65 0 chr5 36186641 36186779 -116350480 + B1_Mus2 SINE Alu 1 147 0 2 861 332 344 23 39 chr5 36186779 36186883 -116350376 + L1MEg LINE L1 1892 1992 -4092 2 861 570 277 144 21 chr5 36188946 36189189 -116348070 + L1MC3 LINE L1 7290 7562 -223 2 861 242 301 123 0 chr5 36191654 36191727 -116345532 + PB1D10 SINE Alu 1 82 -35 2 861 213 39 0 0 chr5 36192428 36192454 -116344805 + (CTGGGG)n Simple_repeat Simple_repeat 6 31 0 2 861 212 246 35 0 chr5 36192839 36192896 -116344363 + MIRm SINE MIR 88 146 -130 2 861 216 288 0 27 chr5 36192902 36192977 -116344282 + C-rich Low_complexity Low_complexity 6 78 0 2 861 311 376 0 0 chr5 36194906 36195031 -116342228 + (CA)n Simple_repeat Simple_repeat 2 126 0 2 861 289 278 0 22 chr5 36195036 36195216 -116342043 + (CATA)n Simple_repeat Simple_repeat 2 177 0 2 861 216 198 0 65 chr5 36195236 36195328 -116341931 + (CATA)n Simple_repeat Simple_repeat 1 86 0 2 861 1171 266 77 10 chr5 36195591 36195891 -116341368 - MTE2b LTR MaLR -12 367 48 2 861 243 0 0 0 chr5 36196536 36196563 -116340696 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 861 379 230 30 0 chr5 36197543 36197708 -116339551 + (TAGA)n Simple_repeat Simple_repeat 2 171 0 2 861 421 333 7 0 chr5 36197712 36197847 -116339412 + (TGGG)n Simple_repeat Simple_repeat 2 137 0 2 861 314 193 55 33 chr5 36198004 36198095 -116339164 - MIRc SINE MIR -67 201 109 2 861 216 0 103 0 chr5 36198607 36198646 -116338613 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 2 861 265 314 63 42 chr5 36199249 36199429 -116337830 + MIRb SINE MIR 42 233 -35 2 861 441 179 54 0 chr5 36200731 36200826 -116336433 + PB1D7 SINE Alu 24 175 0 2 861 710 181 0 13 chr5 36203428 36203516 -116333743 + polypurine Low_complexity Low_complexity 1 88 0 2 861 1049 136 6 0 chr5 36203516 36203693 -116333566 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 2 861 710 181 0 13 chr5 36203693 36203751 -116333508 + polypurine Low_complexity Low_complexity 89 145 0 2 861 995 147 0 6 chr5 36203751 36203929 -116333330 + GA-rich Low_complexity Low_complexity 2 178 0 2 861 582 307 154 62 chr5 36206242 36207218 -116330041 + L1MDa LINE L1 1011 2071 -4562 2 861 248 254 0 0 chr5 36207300 36207359 -116329900 - B3 SINE B2 -7 209 151 2 861 213 205 26 0 chr5 36207675 36207714 -116329545 - B3 SINE B2 -129 87 48 2 861 866 204 20 25 chr5 36207765 36207961 -116329298 + B3A SINE B2 2 196 -2 2 861 324 0 0 0 chr5 36210115 36210151 -116327108 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 861 739 221 44 0 chr5 36212252 36212388 -116324871 + B1_Mur2 SINE Alu 1 142 -7 2 861 412 256 11 0 chr5 36212420 36212510 -116324749 + ID_B1 SINE B4 129 219 -5 2 861 210 404 0 0 chr5 36212915 36213014 -116324245 + MIRm SINE MIR 29 127 -149 2 861 1648 21 16 0 chr5 36213670 36213859 -116323400 + B2_Mm1a SINE B2 2 193 0 2 861 252 0 0 0 chr5 36213883 36213911 -116323348 + (A)n Simple_repeat Simple_repeat 1 28 0 2 861 309 291 7 112 chr5 36213974 36214010 -116323249 + MT2B LTR ERVL 136 156 -445 2 861 660 212 0 1 chr5 36214010 36214130 -116323129 + B1_Mur1 SINE Alu 3 122 -27 2 861 243 0 0 0 chr5 36214130 36214157 -116323102 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 861 195 42 0 0 chr5 36214165 36214189 -116323070 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 2 861 796 75 30 7 chr5 36214189 36214324 -116322935 + (GGGAA)n Simple_repeat Simple_repeat 2 139 0 2 861 247 173 0 19 chr5 36214337 36214390 -116322869 - MER96B DNA hAT -126 291 240 2 861 900 276 42 0 chr5 36216622 36216836 -116320423 + ID_B1 SINE B4 2 224 0 2 861 265 246 93 2 chr5 36220471 36220582 -116316677 - MLT1J1 LTR MaLR -310 138 19 2 861 210 333 53 15 chr5 36221535 36221666 -116315593 + MIRc SINE MIR 11 146 -122 2 861 390 273 50 7 chr5 36222351 36222491 -116314768 - MLT2C2 LTR ERVL -266 198 53 2 861 385 214 16 86 chr5 36223806 36223934 -116313325 + B1F SINE Alu 31 149 0 2 861 658 264 0 0 chr5 36224459 36224603 -116312656 - ID_B1 SINE B4 -1 223 80 2 861 805 132 97 0 chr5 36224689 36224833 -116312426 - MTC LTR MaLR -263 158 1 2 861 324 0 0 0 chr5 36228754 36228790 -116308469 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 861 396 0 0 0 chr5 36228790 36228833 -116308426 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 861 1421 294 103 56 chr5 36228835 36228950 -116308309 - Lx8 LINE L1 -28 7445 7346 2 861 507 280 38 6 chr5 36228950 36229108 -116308151 - RSINE1 SINE B4 0 165 3 2 861 1421 294 103 56 chr5 36229108 36229728 -116307531 - Lx8 LINE L1 -128 7345 6675 2 861 657 251 38 11 chr5 36229728 36229913 -116307346 - B4 SINE B4 -67 225 36 2 861 477 269 35 112 chr5 36231290 36231357 -116305902 - B4 SINE B4 -4 288 235 2 861 920 204 9 28 chr5 36231357 36231569 -116305690 - B3 SINE B2 -6 210 3 2 861 477 269 35 112 chr5 36231569 36231698 -116305561 - B4 SINE B4 -58 234 107 2 861 293 258 67 0 chr5 36231763 36231852 -116305407 - B3A SINE B2 -30 168 74 2 861 863 168 16 77 chr5 36231837 36231923 -116305336 + URR1A DNA MER1_type 45 132 -94 2 861 2046 70 0 11 chr5 36231923 36232197 -116305062 + L1Md_F2 LINE L1 6300 6570 -12 2 861 863 168 16 77 chr5 36232197 36232304 -116304955 + URR1A DNA MER1_type 133 226 0 2 861 395 263 70 9 chr5 36232304 36232410 -116304849 - B3A SINE B2 -85 113 1 2 861 905 149 103 0 chr5 36232677 36232851 -116304408 + B2_Mm2 SINE B2 4 195 0 2 861 412 263 78 63 chr5 36232857 36232999 -116304260 + ID_B1 SINE B4 81 224 0 2 861 818 188 2 14 chr5 36233116 36233556 -116303703 + (CA)n Simple_repeat Simple_repeat 1 434 0 2 861 1077 280 51 26 chr5 36234679 36235031 -116302228 - MTE2b LTR MaLR -13 366 6 2 861 333 0 0 0 chr5 36237822 36237859 -116299400 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 861 534 31 0 0 chr5 36237859 36237922 -116299337 + (GA)n Simple_repeat Simple_repeat 1 64 0 2 861 303 49 0 0 chr5 36238250 36238291 -116298968 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2 861 540 213 174 5 chr5 36238738 36238922 -116298337 + B3 SINE B2 2 216 0 2 861 632 260 46 0 chr5 36239084 36239257 -116298002 - B3A SINE B2 -16 182 2 2 861 270 73 0 0 chr5 36240674 36240715 -116296544 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 861 242 246 0 81 chr5 36241431 36241493 -116295766 - BC1_Mm scRNA scRNA -87 65 9 2 861 829 136 56 21 chr5 36241495 36241638 -116295621 + B1_Mur4 SINE Alu 3 150 0 2 861 756 157 0 0 chr5 36241957 36242123 -116295136 + CT-rich Low_complexity Low_complexity 1 166 0 2 861 423 167 107 10 chr5 36242635 36242738 -116294521 + B1F SINE Alu 36 148 -1 2 861 242 236 79 70 chr5 36242639 36242753 -116294506 + B4 SINE B4 125 239 -53 2 861 301 259 12 0 chr5 36243093 36243174 -116294085 + ID4_ SINE ID 2 83 0 2 861 245 324 80 60 chr5 36243211 36243362 -116293897 + Charlie4z DNA MER1_type 8 161 -6 2 861 297 301 35 35 chr5 36243426 36243567 -116293692 - HAL1 LINE L1 -4 2503 2363 2 861 409 345 0 0 chr5 36243575 36243723 -116293536 + G-rich Low_complexity Low_complexity 1 148 0 2 861 420 338 40 96 chr5 36244083 36244407 -116292852 + MER21B LTR ERV1 173 478 -385 2 861 198 143 0 0 chr5 36244430 36244465 -116292794 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 861 4715 38 0 0 chr5 36244514 36245093 -116292166 - L1Md_T LINE L1 0 6582 6004 2 861 198 167 0 0 chr5 36245123 36245159 -116292100 + CT-rich Low_complexity Low_complexity 1 36 0 2 861 1386 88 5 0 chr5 36245159 36245351 -116291908 - B2_Mm1a SINE B2 0 193 1 2 861 526 209 156 12 chr5 36245571 36245730 -116291529 + B3 SINE B2 1 182 -34 2 861 906 198 16 0 chr5 36245730 36245912 -116291347 - ORR1D2 LTR MaLR -1 369 185 2 861 654 259 140 45 chr5 36246002 36246338 -116290921 + MLT1A LTR MaLR 7 374 0 2 861 198 0 0 0 chr5 36247491 36247513 -116289746 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 861 661 254 36 111 chr5 36247530 36247836 -116289423 - B4 SINE B4 -9 283 1 2 861 252 0 0 0 chr5 36248289 36248317 -116288942 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 861 468 234 44 0 chr5 36248886 36249023 -116288236 + L1MD LINE L1 5182 5324 -822 2 861 252 0 0 0 chr5 36249029 36249057 -116288202 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 2 861 352 195 65 0 chr5 36249139 36249216 -116288043 + ID4_ SINE ID 2 83 0 2 861 378 279 117 35 chr5 36249312 36249542 -116287717 + L1MD LINE L1 5538 5786 -456 2 861 267 205 295 0 chr5 36249580 36249692 -116287567 - B3 SINE B2 -71 145 1 2 861 654 271 36 55 chr5 36250149 36250179 -116287080 - B3 SINE B2 0 216 183 2 861 231 36 0 0 chr5 36250179 36250207 -116287052 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 861 761 243 10 12 chr5 36250207 36250395 -116286864 - B3A SINE B2 -34 182 2 2 861 209 230 0 33 chr5 36251333 36251423 -116285836 + (TG)n Simple_repeat Simple_repeat 2 88 0 3 861 267 340 20 20 chr5 36252061 36252163 -116285096 + MER5B DNA MER1_type 77 178 0 3 861 235 360 32 48 chr5 36252490 36252677 -116284582 + MIRb SINE MIR 68 251 -17 3 861 1450 231 74 16 chr5 36252754 36253133 -116284126 - MTD LTR MaLR -14 405 5 3 861 1522 179 34 167 chr5 36253407 36253843 -116283416 - ORR1C1 LTR MaLR 0 378 1 3 861 221 253 75 12 chr5 36254035 36254115 -116283144 + L2b LINE L2 3276 3360 -15 3 861 270 0 0 0 chr5 36254427 36254457 -116282802 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 861 978 183 91 0 chr5 36254507 36254704 -116282555 - B3 SINE B2 -1 215 1 3 861 285 164 49 0 chr5 36254721 36254782 -116282477 - B3 SINE B2 -1 215 152 3 861 1493 226 83 25 chr5 36254788 36255183 -116282076 + MTD LTR MaLR 1 418 -1 3 861 2116 192 152 63 chr5 36255185 36255851 -116281408 + MTD-int LTR MaLR 2 726 -532 3 861 1033 162 45 15 chr5 36255818 36256019 -116281240 + MTD LTR MaLR 213 419 0 3 861 711 224 28 0 chr5 36256019 36256162 -116281097 - B3A SINE B2 -51 147 1 3 861 237 114 0 0 chr5 36256169 36256193 -116281066 + (T)n Simple_repeat Simple_repeat 1 24 0 3 861 1133 55 7 0 chr5 36256193 36256339 -116280920 - B1_Mus2 SINE Alu 0 147 1 3 861 237 114 0 0 chr5 36256339 36256358 -116280901 + (T)n Simple_repeat Simple_repeat 1 19 0 3 861 426 86 14 23 chr5 36257206 36257324 -116279935 - B2_Mm2 SINE B2 0 195 47 3 861 1179 108 11 0 chr5 36257352 36257528 -116279731 - B2_Mm1t SINE B2 -14 179 2 3 861 994 147 117 39 chr5 36257915 36258121 -116279138 - URR1A DNA MER1_type 0 226 5 3 861 249 98 0 0 chr5 36258368 36258409 -116278850 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 3 861 315 295 50 74 chr5 36259067 36259188 -116278071 - MIR SINE MIR -61 201 84 3 861 489 269 15 30 chr5 36259229 36259363 -116277896 - ID_B1 SINE B4 -8 216 85 3 861 296 339 92 5 chr5 36259371 36259555 -116277704 - L1MA5 LINE L1 0 6300 6101 3 861 800 219 71 0 chr5 36259766 36259949 -116277310 - B3 SINE B2 -20 196 1 3 861 261 253 96 0 chr5 36260054 36260137 -116277122 + MIRc SINE MIR 114 204 -64 3 861 517 245 161 55 chr5 36260240 36260552 -116276707 + MTD LTR MaLR 1 356 -63 3 861 450 36 0 0 chr5 36261713 36261769 -116275490 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 861 549 275 33 20 chr5 36261769 36261921 -116275338 - B3A SINE B2 -44 154 1 3 861 197 311 33 0 chr5 36262043 36262104 -116275155 + L2c LINE L2 3319 3381 -6 3 861 293 0 56 37 chr5 36262424 36262478 -116274781 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 861 412 241 30 126 chr5 36263216 36263285 -116273974 - B2_Mm2 SINE B2 -2 193 130 3 861 360 0 0 0 chr5 36263285 36263325 -116273934 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 861 639 197 8 16 chr5 36263325 36263454 -116273805 - B3A SINE B2 -57 141 14 3 861 191 62 0 59 chr5 36266528 36266562 -116270697 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 3 861 291 28 0 0 chr5 36267277 36267313 -116269946 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 861 221 225 20 90 chr5 36267643 36267743 -116269516 - MIRb SINE MIR -3 259 171 3 861 628 264 40 0 chr5 36268929 36269077 -116268182 - RSINE1 SINE B4 -10 155 2 3 861 195 42 0 0 chr5 36270016 36270040 -116267219 + (TGG)n Simple_repeat Simple_repeat 3 26 0 3 861 344 337 177 15 chr5 36270396 36270667 -116266592 - L1ME1 LINE L1 -299 5880 5566 3 861 1095 81 0 0 chr5 36271563 36271711 -116265548 - B1_Mus1 SINE Alu 0 148 1 3 861 243 291 13 0 chr5 36272104 36272183 -116265076 - ID4_ SINE ID -2 81 2 3 861 654 294 54 14 chr5 36272389 36272669 -116264590 + B4A SINE B4 2 292 0 3 861 200 137 0 19 chr5 36272893 36272945 -116264314 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 861 261 0 0 0 chr5 36273545 36273574 -116263685 + (T)n Simple_repeat Simple_repeat 1 29 0 3 861 715 112 0 0 chr5 36273574 36273681 -116263578 - B2_Mm2 SINE B2 -88 107 1 3 861 637 239 66 70 chr5 36274946 36275277 -116261982 + MTD LTR MaLR 48 405 -14 3 861 400 266 216 22 chr5 36276130 36276399 -116260860 - Charlie1 DNA MER1_type -142 2639 2319 3 861 1405 52 5 30 chr5 36277604 36277763 -116259496 + B2_Mm1a SINE B2 2 160 -33 3 861 243 0 0 0 chr5 36277763 36277790 -116259469 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 861 1405 52 5 30 chr5 36277790 36277827 -116259432 + B2_Mm1a SINE B2 161 193 0 3 861 276 338 41 54 chr5 36279458 36279605 -116257654 - Tigger7 DNA MER2_type -67 2424 2280 3 861 566 214 42 8 chr5 36279783 36279901 -116257358 + URR1B DNA MER1_type 5 126 -99 3 861 249 33 0 0 chr5 36279901 36279931 -116257328 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 861 1156 48 0 26 chr5 36279947 36280098 -116257161 - B1_Mus1 SINE Alu 0 148 2 3 861 387 0 0 0 chr5 36280152 36280195 -116257064 + (TTA)n Simple_repeat Simple_repeat 3 45 0 3 861 422 278 30 15 chr5 36280833 36280968 -116256291 - B1F SINE Alu -12 137 1 3 861 611 249 50 77 chr5 36281561 36281822 -116255437 + ORR1D2-int LTR MaLR 24 278 -980 3 861 413 231 28 37 chr5 36281844 36281952 -116255307 + MTE2a LTR MaLR 267 373 -6 3 861 369 284 60 45 chr5 36282072 36282092 -116255167 - ID_B1 SINE B4 -9 215 195 3 861 804 107 0 0 chr5 36282092 36282213 -116255046 + (TTCC)n Simple_repeat Simple_repeat 3 123 0 3 861 598 143 0 30 chr5 36282223 36282324 -116254935 - B1_Mur2 SINE Alu -51 98 1 3 861 432 0 0 0 chr5 36282326 36282374 -116254885 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 3 861 633 332 76 31 chr5 36282962 36283319 -116253940 - ORR1C1 LTR MaLR -5 373 1 3 861 473 272 14 9 chr5 36283319 36283467 -116253792 + ORR1D2 LTR MaLR 33 149 -221 3 861 576 91 0 0 chr5 36283996 36284084 -116253175 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 3 861 287 257 123 26 chr5 36284609 36284747 -116252512 + B3A SINE B2 77 213 -3 3 861 840 60 0 25 chr5 36285012 36285132 -116252127 - B1_Mm SINE Alu 0 147 31 3 861 286 216 204 10 chr5 36285169 36285272 -116251987 - RSINE1 SINE B4 0 165 43 3 861 596 242 183 72 chr5 36285314 36285604 -116251655 + MTD LTR MaLR 84 405 -14 3 861 180 271 135 36 chr5 36286834 36286945 -116250314 - L2c LINE L2 -176 3211 3090 3 861 2550 51 12 0 chr5 36287184 36287518 -116249741 - ORR1A1 LTR MaLR -8 338 1 3 861 523 289 8 0 chr5 36288649 36288770 -116248489 + RSINE1 SINE B4 29 150 -15 3 861 195 42 0 0 chr5 36290991 36291015 -116246244 + (CAGCC)n Simple_repeat Simple_repeat 3 26 0 3 861 225 0 0 0 chr5 36291282 36291307 -116245952 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3 861 696 45 0 0 chr5 36291689 36291777 -116245482 + (TTC)n Simple_repeat Simple_repeat 1 88 0 3 861 481 308 20 7 chr5 36292248 36292395 -116244864 - B1F SINE Alu 0 149 1 3 861 544 109 40 0 chr5 36292447 36292548 -116244711 + (TATG)n Simple_repeat Simple_repeat 2 106 0 3 861 486 268 0 24 chr5 36293013 36293139 -116244120 - B3A SINE B2 -75 123 1 3 861 536 322 0 40 chr5 36293847 36293996 -116243263 - RSINE1 SINE B4 -10 155 13 3 861 575 312 133 0 chr5 36294390 36294669 -116242590 - MLT1A0 LTR MaLR -2 363 48 3 861 549 282 115 9 chr5 36295198 36295505 -116241754 - MTEb LTR MaLR -16 403 22 3 861 264 185 0 0 chr5 36295881 36295935 -116241324 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 861 525 82 31 0 chr5 36295934 36296031 -116241228 + (GA)n Simple_repeat Simple_repeat 1 100 0 3 861 829 209 18 78 chr5 36296043 36296261 -116240998 - B4 SINE B4 -18 274 70 3 861 329 171 0 14 chr5 36296497 36296568 -116240691 - RMER1A Other Other -5 1025 956 3 861 256 240 226 19 chr5 36297173 36297279 -116239980 + Lx8 LINE L1 6901 7037 -436 3 861 258 244 103 0 chr5 36297348 36297426 -116239833 + Lx8 LINE L1 7184 7269 -204 3 861 245 268 70 0 chr5 36297427 36297498 -116239761 + RMER15 LTR ERVL 401 476 -99 3 861 393 282 75 15 chr5 36297796 36297929 -116239330 - RSINE1 SINE B4 -8 157 17 3 861 21 0 0 0 chr5 36297997 36298018 -116239241 + AT_rich Low_complexity Low_complexity 1 21 0 3 861 723 218 46 36 chr5 36298243 36298438 -116238821 + B3A SINE B2 1 197 -1 3 861 26 50 0 0 chr5 36299966 36300006 -116237253 + AT_rich Low_complexity Low_complexity 1 40 0 3 861 273 295 0 135 chr5 36301413 36301554 -116235705 + B1_Mur3 SINE Alu 2 123 -26 3 861 569 180 0 22 chr5 36301572 36301754 -116235505 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 861 216 240 0 0 chr5 36301790 36301890 -116235369 + (CA)n Simple_repeat Simple_repeat 2 101 0 3 861 348 77 19 0 chr5 36301892 36301944 -116235315 + HAL1-3A_ME LINE L1 1976 2028 -830 3 861 456 210 0 0 chr5 36302004 36302171 -116235088 + (CA)n Simple_repeat Simple_repeat 2 168 0 3 861 786 164 0 28 chr5 36302207 36302496 -116234763 + (CA)n Simple_repeat Simple_repeat 1 280 0 3 861 423 194 6 24 chr5 36302500 36302669 -116234590 + (CAGA)n Simple_repeat Simple_repeat 1 166 0 3 861 795 181 0 0 chr5 36302646 36302926 -116234333 + (CA)n Simple_repeat Simple_repeat 1 280 0 3 861 351 0 0 0 chr5 36303441 36303480 -116233779 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 3 861 507 292 114 44 chr5 36303480 36303745 -116233514 - MLT1A0 LTR MaLR -76 289 6 3 861 242 288 147 19 chr5 36303946 36304102 -116233157 + L2c LINE L2 2921 3096 -291 3 861 28 0 0 0 chr5 36304237 36304265 -116232994 + AT_rich Low_complexity Low_complexity 1 28 0 3 861 1394 276 47 17 chr5 36305142 36305610 -116231649 - L1MB3 LINE L1 -16 6167 5686 3 861 226 297 132 0 chr5 36306180 36306271 -116230988 - L1MB3 LINE L1 -2630 5365 5263 3 861 269 283 97 39 chr5 36306766 36306869 -116230390 - PB1 SINE Alu -2 125 17 3 862 218 365 97 39 chr5 36307078 36307232 -116230027 - B3 SINE B2 -53 163 1 3 862 5261 95 11 3 chr5 36308788 36309519 -116227740 - RMER19A LTR ERVK 0 737 1 4 862 24 0 0 0 chr5 36309617 36309641 -116227618 + GC_rich Low_complexity Low_complexity 1 24 0 4 862 183 80 0 0 chr5 36311703 36311728 -116225531 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 862 298 291 104 64 chr5 36312190 36312207 -116225052 + ID SINE ID 67 88 -136 4 862 359 257 5 217 chr5 36312207 36312396 -116224863 + B1F SINE Alu 1 149 0 4 862 500 184 0 39 chr5 36312904 36313006 -116224253 - PB1D9 SINE Alu -2 118 21 4 862 263 292 56 11 chr5 36315265 36315355 -116221904 - PB1D10 SINE Alu 0 117 24 4 862 511 189 18 26 chr5 36315400 36315514 -116221745 - PB1D10 SINE Alu 0 117 5 4 862 920 95 0 7 chr5 36317511 36317649 -116219610 + (TTTC)n Simple_repeat Simple_repeat 4 140 0 4 862 372 5 0 7 chr5 36317654 36317709 -116219550 - B2_Mm1a SINE B2 -18 177 127 4 862 640 146 12 2 chr5 36317739 36317875 -116219384 - B2_Mm1t SINE B2 -46 147 6 4 862 871 245 48 5 chr5 36320208 36320417 -116216842 + ID_B1 SINE B4 2 219 -5 4 862 364 324 110 71 chr5 36320752 36321034 -116216225 + Charlie1a DNA MER1_type 1034 1326 -129 4 862 263 173 0 39 chr5 36321199 36321277 -116215982 - Lx7 LINE L1 -9 7687 7613 4 862 219 69 0 0 chr5 36321334 36321363 -116215896 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 862 4118 270 53 54 chr5 36321392 36321533 -116215726 - Lx7 LINE L1 -396 7300 7184 4 862 771 194 30 0 chr5 36321533 36321667 -116215592 - B1_Mur2 SINE Alu -10 139 2 4 862 4118 270 53 54 chr5 36321667 36322890 -116214369 - Lx7 LINE L1 -513 7183 5937 4 862 462 253 60 49 chr5 36322893 36323076 -116214183 + L1_Mur3 LINE L1 5119 5303 -577 4 862 423 232 116 0 chr5 36323078 36323190 -116214069 - MTD LTR MaLR -8 411 287 4 862 235 268 31 125 chr5 36325676 36325804 -116211455 - MER21B LTR ERV1 -221 642 527 4 862 396 167 0 0 chr5 36327753 36327825 -116209434 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 862 1207 41 0 0 chr5 36328874 36329021 -116208238 - B1_Mm SINE Alu 0 147 1 4 862 226 304 102 25 chr5 36331134 36331252 -116206007 - MIRb SINE MIR -91 177 51 4 862 1522 37 16 0 chr5 36331490 36331680 -116205579 - B2_Mm2 SINE B2 -1 194 2 4 862 214 341 59 7 chr5 36332780 36332916 -116204343 - MIRc SINE MIR -96 172 30 4 862 351 0 0 0 chr5 36334236 36334275 -116202984 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 862 276 276 49 105 chr5 36334394 36334556 -116202703 + MTD LTR MaLR 188 340 -79 4 862 296 279 92 11 chr5 36334716 36334841 -116202418 - MIR SINE MIR -19 249 112 4 862 1118 185 24 0 chr5 36335037 36335242 -116202017 - B3 SINE B2 -6 210 1 4 862 368 245 32 0 chr5 36335275 36335369 -116201890 - MTE2a LTR MaLR -1 378 282 4 862 250 260 0 75 chr5 36335373 36335560 -116201699 + (TTAGGG)n Simple_repeat Simple_repeat 4 176 0 4 862 441 252 104 78 chr5 36335592 36335929 -116201330 - MTD LTR MaLR -75 344 2 4 862 1810 129 24 86 chr5 36337537 36337769 -116199490 - ORR1A3 LTR MaLR -8 318 88 4 862 1224 68 0 0 chr5 36337769 36337916 -116199343 + B1_Mus2 SINE Alu 1 147 0 4 862 2961 45 0 19 chr5 36337917 36338279 -116198980 + L1_Mus1 LINE L1 6213 6567 0 4 862 1810 129 24 86 chr5 36338279 36338383 -116198876 - ORR1A3 LTR MaLR -239 87 1 4 862 210 71 0 0 chr5 36342978 36343006 -116194253 + (T)n Simple_repeat Simple_repeat 1 28 0 4 862 1057 77 0 0 chr5 36344879 36345009 -116192250 - B1_Mus1 SINE Alu -17 131 2 4 862 24 53 0 0 chr5 36346137 36346175 -116191084 + AT_rich Low_complexity Low_complexity 1 38 0 4 862 183 42 0 0 chr5 36346220 36346244 -116191015 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 862 3044 62 52 0 chr5 36351071 36351458 -116185801 + MTB_Mm LTR MaLR 1 407 0 4 862 448 189 52 29 chr5 36353009 36353183 -116184076 + (GTGTG)n Simple_repeat Simple_repeat 2 179 0 4 862 183 113 57 0 chr5 36353227 36353280 -116183979 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 862 2964 68 47 0 chr5 36354895 36355277 -116181982 + MTB LTR MaLR 1 400 0 4 862 317 280 15 53 chr5 36355657 36355789 -116181470 + MER83B-int LTR ERV1 881 1007 -3873 4 862 273 302 50 8 chr5 36356287 36356407 -116180852 + RLTR42-int LTR ERVK 1236 1360 -4162 4 862 3544 20 5 0 chr5 36357695 36358089 -116179170 + MTA_Mm LTR MaLR 1 396 0 4 862 8650 46 29 5 chr5 36358089 36359161 -116178098 + MTA_Mm-int LTR MaLR 1 1098 0 4 862 3210 37 42 0 chr5 36359161 36359541 -116177718 + MTA_Mm LTR MaLR 1 396 0 4 862 399 21 0 0 chr5 36359548 36359596 -116177663 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 862 189 0 0 0 chr5 36360738 36360759 -116176500 + (CAG)n Simple_repeat Simple_repeat 1 21 0 4 862 222 184 0 0 chr5 36360826 36360864 -116176395 + G-rich Low_complexity Low_complexity 3 40 0 4 862 211 320 12 37 chr5 36363104 36363185 -116174074 + MIRb SINE MIR 27 105 -163 4 862 1422 81 16 0 chr5 36364120 36364305 -116172954 - B2_Mm2 SINE B2 -3 192 5 4 862 363 202 0 0 chr5 36364395 36364474 -116172785 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 862 413 216 26 7 chr5 36371966 36372120 -116165139 + (CACCAT)n Simple_repeat Simple_repeat 5 161 0 4 862 1009 291 132 35 chr5 36372378 36372837 -116164422 + ORR1E-int LTR MaLR 1023 1528 -52 4 862 586 353 51 48 chr5 36372837 36373191 -116164068 + ORR1E LTR MaLR 2 356 -3 4 862 307 284 25 33 chr5 36373193 36373313 -116163946 + HAL1-2a_MD LINE L1 2369 2487 -537 4 862 570 268 17 23 chr5 36373314 36373486 -116163773 + HAL1-2a_MD LINE L1 2345 2515 -509 4 862 373 343 36 21 chr5 36373507 36373647 -116163612 + HAL1-2a_MD LINE L1 2342 2483 -541 4 862 191 167 0 23 chr5 36374546 36374589 -116162670 + C-rich Low_complexity Low_complexity 4 45 0 4 862 204 40 0 0 chr5 36374694 36374719 -116162540 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 862 1016 88 0 29 chr5 36374719 36374859 -116162400 - B1_Mus1 SINE Alu -10 138 3 4 862 3300 45 17 5 chr5 36375305 36375707 -116161552 + MTB_Mm LTR MaLR 1 407 0 4 862 450 0 0 0 chr5 36376822 36376872 -116160387 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 862 308 254 69 42 chr5 36377518 36377662 -116159597 + L1ME4a LINE L1 5975 6122 -2 4 862 240 240 0 0 chr5 36377719 36377769 -116159490 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 862 342 275 12 0 chr5 36377914 36377994 -116159265 + ID4_ SINE ID 2 82 -1 4 862 227 255 0 0 chr5 36378071 36378118 -116159141 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 862 202 244 12 12 chr5 36379078 36379161 -116158098 + (TGGA)n Simple_repeat Simple_repeat 4 86 0 4 862 848 193 6 11 chr5 36379187 36379552 -116157707 + (TGGA)n Simple_repeat Simple_repeat 1 362 0 4 862 189 196 0 0 chr5 36379994 36380040 -116157219 + (TGGG)n Simple_repeat Simple_repeat 2 47 0 4 862 372 253 142 29 chr5 36381246 36381506 -116155753 + MER31A LTR ERV1 15 347 -138 4 862 750 78 0 0 chr5 36385209 36385311 -116151948 + (TTTTC)n Simple_repeat Simple_repeat 1 102 0 4 862 1087 112 0 17 chr5 36385311 36385492 -116151767 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 4 862 456 19 0 0 chr5 36385492 36385545 -116151714 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 862 272 336 47 0 chr5 36385923 36386072 -116151187 + (CCTG)n Simple_repeat Simple_repeat 3 158 0 4 862 436 259 9 36 chr5 36387553 36387665 -116149594 - PB1D10 SINE Alu -8 109 1 4 862 264 267 0 0 chr5 36390014 36390074 -116147185 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 4 862 348 296 0 0 chr5 36390079 36390238 -116147021 + (CCCA)n Simple_repeat Simple_repeat 2 160 0 4 862 661 325 49 52 chr5 36391462 36391748 -116145511 + B4A SINE B4 2 286 -6 4 862 504 0 0 0 chr5 36391768 36391824 -116145435 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 862 413 275 6 0 chr5 36394277 36394444 -116142815 + (TGGA)n Simple_repeat Simple_repeat 2 169 0 4 862 384 253 6 22 chr5 36394573 36394751 -116142508 + (TGGA)n Simple_repeat Simple_repeat 3 177 0 4 862 209 213 32 32 chr5 36394766 36394829 -116142430 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 4 862 461 299 161 50 chr5 36394866 36395302 -116141957 - MLT1D LTR MaLR -19 486 3 4 862 340 344 134 50 chr5 36395482 36395825 -116141434 - MLT1D-int LTR MaLR -198 1173 802 4 862 2947 112 16 8 chr5 36395826 36396310 -116140949 - RLTR28 LTR ERVL 0 524 37 4 862 215 238 22 121 chr5 36396836 36396927 -116140332 - MIRm SINE MIR -142 134 53 4 862 303 236 85 56 chr5 36397069 36397206 -116140053 + L2c LINE L2 3056 3202 -185 4 862 189 294 26 45 chr5 36398904 36398992 -116138267 + MIR3 SINE MIR 92 184 -78 4 862 551 208 50 0 chr5 36399860 36399961 -116137298 + PB1D10 SINE Alu 5 110 -7 4 862 634 334 107 20 chr5 36401234 36401625 -116135634 - MLT1J LTR MaLR -81 431 7 4 862 1029 198 0 66 chr5 36401894 36402105 -116135154 - B3A SINE B2 -1 197 1 4 862 576 295 175 43 chr5 36402167 36402694 -116134565 - L1M4c LINE L1 -4807 1577 986 4 862 306 0 0 0 chr5 36402694 36402728 -116134531 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 862 576 295 175 43 chr5 36402728 36402827 -116134432 - L1M4c LINE L1 -5399 985 868 4 862 306 0 0 0 chr5 36402914 36402948 -116134311 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 862 527 319 66 45 chr5 36403325 36403657 -116133602 - L1M4c LINE L1 -6031 353 15 4 862 352 303 214 53 chr5 36405412 36405707 -116131552 + MTEa LTR MaLR 31 373 -6 4 862 426 331 6 6 chr5 36406279 36406458 -116130801 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 862 393 22 0 0 chr5 36406477 36406523 -116130736 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 862 227 122 20 0 chr5 36406614 36406663 -116130596 + (TCTG)n Simple_repeat Simple_repeat 1 50 0 4 862 373 225 75 0 chr5 36407451 36407531 -116129728 + MTE2b LTR MaLR 2 87 -292 4 862 792 225 9 17 chr5 36408710 36409253 -116128006 + (CTCA)n Simple_repeat Simple_repeat 1 538 0 4 862 244 272 63 32 chr5 36411393 36411488 -116125771 - MIRb SINE MIR -149 119 22 4 862 680 130 9 0 chr5 36411814 36411929 -116125330 + (GA)n Simple_repeat Simple_repeat 1 116 0 4 862 322 70 0 50 chr5 36412062 36412122 -116125137 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 4 862 495 243 0 0 chr5 36413086 36413222 -116124037 + (TG)n Simple_repeat Simple_repeat 1 136 0 4 862 486 0 0 0 chr5 36415780 36415834 -116121425 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 5 862 248 301 0 0 chr5 36416103 36416186 -116121073 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 862 224 290 29 14 chr5 36416311 36416381 -116120878 - MIRc SINE MIR -114 154 84 5 862 461 195 11 0 chr5 36417316 36417403 -116119856 - B4A SINE B4 -204 88 1 5 862 340 285 30 8 chr5 36418706 36418837 -116118422 + (TCCA)n Simple_repeat Simple_repeat 1 134 0 5 862 228 67 0 0 chr5 36418933 36418963 -116118296 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 5 862 2313 133 73 5 chr5 36418971 36419340 -116117919 + ORR1B1 LTR MaLR 1 394 0 5 862 206 227 13 0 chr5 36419357 36419432 -116117827 + (TCCA)n Simple_repeat Simple_repeat 2 77 0 5 862 315 358 8 0 chr5 36419956 36420079 -116117180 + MLT1D LTR MaLR 378 501 -4 5 862 1183 62 0 0 chr5 36421216 36421361 -116115898 + B1_Mus1 SINE Alu 2 146 -2 5 862 4633 124 58 16 chr5 36421655 36422424 -116114835 + Lx4B LINE L1 6090 6891 -167 5 862 534 242 90 8 chr5 36422425 36422558 -116114701 - MTD LTR MaLR -233 186 43 5 862 198 0 0 0 chr5 36422632 36422654 -116114605 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 862 207 69 0 0 chr5 36424147 36424176 -116113083 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 862 361 275 150 8 chr5 36425402 36425597 -116111662 - L1MD3 LINE L1 -701 7084 6861 5 862 193 370 22 0 chr5 36427356 36427448 -116109811 - MIRb SINE MIR -85 183 90 5 862 539 255 58 7 chr5 36429931 36430069 -116107190 + RSINE1 SINE B4 12 156 -9 5 862 567 174 181 14 chr5 36430191 36430342 -116106917 - ORR1D2 LTR MaLR 0 370 168 5 862 654 13 0 0 chr5 36430342 36430417 -116106842 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 862 506 253 76 45 chr5 36430417 36430548 -116106711 - ORR1D2 LTR MaLR -203 167 25 5 862 233 328 63 45 chr5 36430800 36430937 -116106322 - MIRb SINE MIR -46 216 78 5 862 335 153 13 40 chr5 36432527 36432602 -116104657 + RMER10A LTR ERVL 345 417 -25 5 862 251 284 130 37 chr5 36432700 36432861 -116104398 + ORR1E LTR MaLR 19 194 -165 5 862 2231 171 105 94 chr5 36433009 36433552 -116103707 - RMER4B LTR ERVK 0 585 35 5 862 495 0 0 0 chr5 36433552 36433607 -116103652 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 862 423 0 0 0 chr5 36433607 36433653 -116103606 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 862 2231 171 105 94 chr5 36433653 36433671 -116103588 - RMER4B LTR ERVK -551 34 18 5 862 190 330 91 0 chr5 36435204 36435292 -116101967 + MIRb SINE MIR 34 129 -139 5 862 471 18 0 0 chr5 36435945 36436001 -116101258 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 862 462 18 0 0 chr5 36437377 36437432 -116099827 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 5 862 227 227 0 0 chr5 36437519 36437563 -116099696 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 862 1308 147 6 9 chr5 36437668 36437998 -116099261 + (TGGA)n Simple_repeat Simple_repeat 1 329 0 5 863 505 339 0 22 chr5 36438039 36438188 -116099071 + (TGGG)n Simple_repeat Simple_repeat 2 148 0 5 863 252 0 0 0 chr5 36438188 36438216 -116099043 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 863 505 339 0 22 chr5 36438216 36438250 -116099009 + (TGGG)n Simple_repeat Simple_repeat 1 33 0 5 863 291 258 116 8 chr5 36439006 36439127 -116098132 - MER53 DNA hAT -19 174 41 5 863 197 203 77 92 chr5 36442166 36442231 -116095028 - L2c LINE L2 -36 3351 3288 5 863 276 213 0 0 chr5 36442728 36442789 -116094470 + (CACCAT)n Simple_repeat Simple_repeat 4 64 0 5 863 909 247 17 48 chr5 36442799 36443029 -116094230 + ID_B1 SINE B4 2 224 0 5 863 468 0 0 0 chr5 36443421 36443473 -116093786 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 863 1346 278 106 12 chr5 36444966 36445591 -116091668 + RCHARR1 DNA MER1_type 13 970 -4 5 863 439 362 74 69 chr5 36446022 36446191 -116091068 + L1MEe LINE L1 750 909 -3945 5 863 1212 175 9 36 chr5 36446191 36446411 -116090848 + B3 SINE B2 2 215 -1 5 863 439 362 74 69 chr5 36446411 36446633 -116090626 + L1MEe LINE L1 910 1143 -3711 5 863 380 182 0 11 chr5 36446648 36446737 -116090522 + (TG)n Simple_repeat Simple_repeat 1 88 0 5 863 681 293 86 24 chr5 36446761 36446971 -116090288 - B4 SINE B4 -4 288 66 5 863 1600 228 24 24 chr5 36447048 36447421 -116089838 + MTE2a LTR MaLR 4 376 -3 5 863 26 0 0 0 chr5 36447546 36447572 -116089687 + AT_rich Low_complexity Low_complexity 1 26 0 5 863 1040 149 34 22 chr5 36447609 36447787 -116089472 + B2_Mm2 SINE B2 2 181 -14 5 863 1693 211 75 5 chr5 36447889 36448274 -116088985 - MTD LTR MaLR 0 419 8 5 863 336 351 11 67 chr5 36448457 36448637 -116088622 + MLT1E2 LTR MaLR 1 170 -457 5 863 227 315 33 11 chr5 36448667 36448757 -116088502 + MLT1E2 LTR MaLR 304 395 -110 5 863 248 188 141 0 chr5 36450620 36450920 -116086339 + (CAGCC)n Simple_repeat Simple_repeat 1 342 0 5 863 393 324 95 33 chr5 36451936 36452147 -116085112 + MER21B LTR ERV1 116 339 -524 5 863 366 216 17 0 chr5 36452227 36452403 -116084856 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 863 211 177 63 16 chr5 36452407 36452470 -116084789 + (TGAG)n Simple_repeat Simple_repeat 1 66 0 5 863 372 353 72 40 chr5 36452473 36452750 -116084509 + MER21B LTR ERV1 485 770 -93 5 863 268 322 60 91 chr5 36454674 36454906 -116082353 + MLT1F LTR MaLR 226 450 -110 5 863 426 39 0 0 chr5 36456363 36456415 -116080844 + (GGA)n Simple_repeat Simple_repeat 2 53 0 5 863 3002 51 96 0 chr5 36456763 36457138 -116080121 + RLTR10A LTR ERVK 1 411 0 5 863 1713 154 119 28 chr5 36457173 36457534 -116079725 - MTD LTR MaLR -8 411 18 5 863 791 21 10 0 chr5 36457631 36457728 -116079531 + (TC)n Simple_repeat Simple_repeat 1 98 0 5 863 1845 143 39 3 chr5 36458700 36459009 -116078250 - Lx LINE L1 0 6654 6335 5 863 316 195 72 12 chr5 36459175 36459258 -116078001 + MIRc SINE MIR 71 158 -110 5 863 286 390 61 22 chr5 36461405 36461633 -116075626 - MLT1A LTR MaLR -77 297 61 5 863 272 314 158 43 chr5 36461665 36461918 -116075341 + L1MB7 LINE L1 5676 5957 -227 5 863 201 138 0 0 chr5 36462186 36462215 -116075044 + (CATG)n Simple_repeat Simple_repeat 4 32 0 5 863 279 200 206 20 chr5 36462341 36462443 -116074816 + RMER4B LTR ERVK 465 585 0 5 863 1005 33 0 0 chr5 36464009 36464130 -116073129 + (TC)n Simple_repeat Simple_repeat 2 122 0 5 863 288 0 0 0 chr5 36464131 36464163 -116073096 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 863 182 178 0 100 chr5 36464715 36464765 -116072494 - L2c LINE L2 -225 3162 3118 5 863 1278 34 0 0 chr5 36465153 36465299 -116071960 - B1_Mus2 SINE Alu 0 147 2 5 863 581 272 78 67 chr5 36465397 36465665 -116071594 + B4A SINE B4 1 271 -21 5 863 494 330 78 19 chr5 36465669 36465938 -116071321 + Charlie5 DNA MER1_type 2269 2553 -71 5 863 213 211 58 0 chr5 36466475 36466527 -116070732 + CT-rich Low_complexity Low_complexity 4 58 0 5 863 384 22 0 0 chr5 36466923 36466968 -116070291 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 863 677 148 8 0 chr5 36468972 36469100 -116068159 + (TCCA)n Simple_repeat Simple_repeat 1 129 0 5 863 1186 109 119 43 chr5 36472105 36472315 -116064944 + URR1A DNA MER1_type 1 226 0 5 863 342 0 0 0 chr5 36472636 36472674 -116064585 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 863 1237 305 81 32 chr5 36473098 36473651 -116063608 + L1MC3 LINE L1 6693 7272 -513 5 863 644 302 104 20 chr5 36474024 36474274 -116062985 + B4A SINE B4 7 277 -15 5 863 285 197 0 0 chr5 36474709 36474775 -116062484 + CT-rich Low_complexity Low_complexity 2 67 0 5 863 260 276 69 0 chr5 36475499 36475586 -116061673 + MLT1B LTR MaLR 54 146 -244 5 863 296 361 0 0 chr5 36476600 36476697 -116060562 + MLT1C LTR MaLR 33 129 -338 5 863 253 333 31 0 chr5 36477014 36477110 -116060149 + MER58B DNA MER1_type 242 340 -1 5 863 261 135 0 0 chr5 36477572 36477624 -116059635 + (TATG)n Simple_repeat Simple_repeat 4 55 0 5 863 231 218 0 0 chr5 36477662 36477717 -116059542 + (TGGA)n Simple_repeat Simple_repeat 4 58 0 5 863 354 298 16 8 chr5 36477718 36477843 -116059416 + (TAGA)n Simple_repeat Simple_repeat 4 129 0 5 863 741 23 0 0 chr5 36479950 36480037 -116057222 + (GA)n Simple_repeat Simple_repeat 1 87 0 5 863 191 365 39 67 chr5 36480929 36481108 -116056151 - MIRc SINE MIR -6 262 89 5 863 225 236 18 18 chr5 36481342 36481454 -116055805 + (TGGA)n Simple_repeat Simple_repeat 1 112 0 5 863 255 103 0 0 chr5 36481458 36481497 -116055762 + (GCTG)n Simple_repeat Simple_repeat 4 42 0 5 863 492 261 11 151 chr5 36482658 36482843 -116054416 + RSINE1 SINE B4 7 165 0 5 863 725 68 0 19 chr5 36483786 36483891 -116053368 + (GGGAGA)n Simple_repeat Simple_repeat 1 103 0 5 863 747 87 0 0 chr5 36484342 36484446 -116052813 + (GA)n Simple_repeat Simple_repeat 1 104 0 5 863 280 311 70 49 chr5 36485625 36485767 -116051492 + MLT1D LTR MaLR 345 489 -16 5 863 632 290 38 47 chr5 36485989 36486224 -116051035 - MLT1D LTR MaLR -272 233 1 5 863 212 179 0 25 chr5 36488019 36488059 -116049200 + CT-rich Low_complexity Low_complexity 1 39 0 5 863 234 91 0 0 chr5 36488812 36488845 -116048414 + (TGGA)n Simple_repeat Simple_repeat 2 34 0 5 863 405 0 0 0 chr5 36489442 36489487 -116047772 + (A)n Simple_repeat Simple_repeat 1 45 0 5 863 195 69 0 0 chr5 36489511 36489540 -116047719 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 863 638 230 0 11 chr5 36490543 36490723 -116046536 + (CATA)n Simple_repeat Simple_repeat 1 178 0 5 863 800 191 6 0 chr5 36490717 36490895 -116046364 + (CA)n Simple_repeat Simple_repeat 1 179 0 5 863 225 0 0 0 chr5 36492372 36492397 -116044862 + (T)n Simple_repeat Simple_repeat 1 25 0 5 863 305 308 62 0 chr5 36492816 36492946 -116044313 + Charlie16a DNA MER1_type 137 274 -68 5 863 333 350 44 0 chr5 36493706 36493866 -116043393 - MIR3 SINE MIR -15 193 27 6 863 211 314 100 0 chr5 36494106 36494221 -116043038 + MIR SINE MIR 35 161 -107 6 863 896 197 88 5 chr5 36494496 36494690 -116042569 + B3 SINE B2 6 215 -1 6 863 617 91 30 68 chr5 36495217 36495457 -116041802 + (TG)n Simple_repeat Simple_repeat 1 230 0 6 863 181 200 25 0 chr5 36495814 36495854 -116041405 - MIRm SINE MIR -125 151 111 6 863 441 0 0 0 chr5 36496422 36496471 -116040788 + (CATA)n Simple_repeat Simple_repeat 1 49 0 6 863 812 196 7 0 chr5 36496817 36496960 -116040299 - B1_Mus1 SINE Alu 0 148 5 6 863 425 229 4 20 chr5 36497030 36497135 -116040124 + B3 SINE B2 35 132 -66 6 863 207 100 0 0 chr5 36498511 36498541 -116038718 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 6 863 203 81 54 0 chr5 36498557 36498594 -116038665 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 6 863 459 328 179 8 chr5 36499017 36499182 -116038077 - MLT1D LTR MaLR -9 496 304 6 863 1253 150 87 0 chr5 36499182 36499389 -116037870 + URR1B DNA MER1_type 1 225 0 6 863 459 328 179 8 chr5 36499389 36499613 -116037646 - MLT1D LTR MaLR -202 303 40 6 863 601 261 69 20 chr5 36499797 36500000 -116037259 + MER33 DNA MER1_type 14 226 -98 6 863 646 284 132 40 chr5 36500020 36500420 -116036839 - L1MC1 LINE L1 -1 6332 5896 1 863 229 289 91 79 chr5 36504531 36504696 -116032563 - Tigger5 DNA MER2_type -60 2346 2180 2 863 341 284 94 8 chr5 36504756 36504873 -116032386 - Tigger5 DNA MER2_type -2241 165 39 2 863 244 278 41 10 chr5 36505866 36505964 -116031295 - MamRep38 DNA hAT -110 185 85 3 863 203 346 47 28 chr5 36507547 36507654 -116029605 + MIRb SINE MIR 92 200 -68 4 863 858 270 68 14 chr5 36507693 36507986 -116029273 + MTD LTR MaLR 104 404 -15 5 863 216 188 21 0 chr5 36508054 36508102 -116029157 - L2a LINE L2 -357 3069 3021 6 863 341 185 176 6 chr5 36510368 36510496 -116026763 + ORR1D1 LTR MaLR 1 159 -215 7 863 489 139 49 0 chr5 36510523 36510645 -116026614 + CT-rich Low_complexity Low_complexity 1 128 0 8 863 680 152 10 35 chr5 36510660 36510804 -116026455 + ORR1D1 LTR MaLR 149 289 -85 7 863 864 188 126 10 chr5 36511323 36511522 -116025737 + MTD LTR MaLR 184 405 -14 9 863 209 270 19 14 chr5 36512884 36512968 -116024291 + MIRb SINE MIR 8 99 -169 1 863 187 391 45 0 chr5 36513421 36513531 -116023728 - MIRb SINE MIR -114 154 40 1 863 630 335 78 12 chr5 36514576 36514999 -116022260 + L1MA7 LINE L1 5559 6009 -282 1 863 310 284 28 0 chr5 36515876 36515985 -116021274 + (TGGA)n Simple_repeat Simple_repeat 3 114 0 1 863 253 312 11 0 chr5 36516026 36516202 -116021057 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 1 863 217 178 22 0 chr5 36516213 36516258 -116021001 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 1 863 705 138 35 0 chr5 36516426 36516542 -116020717 + B1_Mus2 SINE Alu 9 128 -19 1 863 200 200 0 0 chr5 36516563 36516613 -116020646 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 1 863 231 355 21 0 chr5 36517248 36517341 -116019918 - MER117 DNA MER1_type -43 154 60 1 863 259 256 48 12 chr5 36518730 36518813 -116018446 - ORR1E LTR MaLR -264 95 10 1 863 628 275 7 0 chr5 36520304 36520446 -116016813 + RSINE1 SINE B4 1 143 -22 1 863 408 40 0 0 chr5 36520447 36520497 -116016762 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 863 22 35 0 0 chr5 36520498 36520527 -116016732 + AT_rich Low_complexity Low_complexity 1 29 0 2 863 1013 80 0 0 chr5 36523064 36523201 -116014058 - L1_Mus2 LINE L1 -328 6238 6102 2 863 207 186 62 0 chr5 36523253 36523350 -116013909 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 2 863 344 329 21 14 chr5 36523353 36523495 -116013764 + (CCCA)n Simple_repeat Simple_repeat 2 144 0 2 863 283 342 0 0 chr5 36525770 36525781 -116011478 + ID SINE ID 71 81 -143 2 863 278 351 0 0 chr5 36525781 36525858 -116011401 + B1F1 SINE Alu 1 77 -72 2 863 277 82 41 0 chr5 36525863 36525912 -116011347 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 2 863 824 234 31 48 chr5 36526028 36526312 -116010947 + ORR1C2 LTR MaLR 1 281 -89 2 863 458 179 34 11 chr5 36526341 36526516 -116010743 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 2 863 944 215 24 5 chr5 36526542 36526752 -116010507 + ORR1C2 LTR MaLR 171 384 0 2 863 414 286 12 43 chr5 36527485 36527646 -116009613 + HAL1-2a_MD LINE L1 2344 2499 -525 3 863 488 280 13 20 chr5 36527705 36527858 -116009401 - MIRb SINE MIR -58 210 59 3 863 640 165 7 15 chr5 36528344 36528479 -116008780 + GA-rich Low_complexity Low_complexity 3 136 0 3 863 396 0 0 0 chr5 36529373 36529417 -116007842 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 863 608 56 11 0 chr5 36530792 36530881 -116006378 + (CA)n Simple_repeat Simple_repeat 2 91 0 3 863 185 193 31 0 chr5 36531791 36531845 -116005414 - MIRc SINE MIR -96 166 111 3 863 1369 253 46 35 chr5 36531922 36532270 -116004989 + MTEa LTR MaLR 18 369 -10 3 863 261 285 187 0 chr5 36535962 36536085 -116001174 + LTR16C LTR ERVL 190 335 -154 3 863 206 360 0 0 chr5 36537383 36537458 -115999801 + GA-rich Low_complexity Low_complexity 2 76 0 3 863 412 341 173 18 chr5 36538445 36539095 -115998164 + L2a LINE L2 2671 3419 -7 3 863 540 0 0 0 chr5 36539423 36539483 -115997776 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 863 970 97 29 0 chr5 36539908 36540083 -115997176 + (TATG)n Simple_repeat Simple_repeat 1 180 0 4 863 469 56 42 0 chr5 36540098 36540170 -115997089 + (TATG)n Simple_repeat Simple_repeat 1 75 0 4 863 255 336 124 40 chr5 36540171 36540469 -115996790 + MLT1B LTR MaLR 22 344 -46 4 863 180 125 0 0 chr5 36541948 36541980 -115995279 + (G)n Simple_repeat Simple_repeat 1 32 0 4 863 261 368 132 0 chr5 36542699 36542843 -115994416 + L1ME2 LINE L1 6000 6162 -2 4 863 520 321 30 20 chr5 36542851 36543051 -115994208 + L1MC4 LINE L1 6360 6561 -1481 4 863 830 83 8 0 chr5 36543114 36543234 -115994025 + (TGGA)n Simple_repeat Simple_repeat 3 123 0 4 863 227 324 0 0 chr5 36543237 36543308 -115993951 + (TGGG)n Simple_repeat Simple_repeat 4 74 0 4 863 264 122 0 0 chr5 36543311 36543352 -115993907 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 4 863 336 304 194 11 chr5 36543466 36543739 -115993520 + L1MC4 LINE L1 6702 7024 -1018 4 863 380 311 24 8 chr5 36544183 36544306 -115992953 + L1MC4 LINE L1 7745 7869 -173 4 863 344 125 0 15 chr5 36544390 36544455 -115992804 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 4 863 234 350 10 0 chr5 36544458 36544558 -115992701 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 5 863 284 300 6 0 chr5 36544560 36544720 -115992539 + (TGGA)n Simple_repeat Simple_repeat 1 161 0 5 863 351 0 0 0 chr5 36544740 36544779 -115992480 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 863 341 238 0 10 chr5 36544801 36544903 -115992356 + (TGGA)n Simple_repeat Simple_repeat 1 101 0 5 863 216 235 78 0 chr5 36548348 36548399 -115988860 - MIRb SINE MIR -92 176 122 5 863 299 302 43 8 chr5 36549006 36549123 -115988136 + MIRb SINE MIR 120 240 -28 5 863 239 387 11 0 chr5 36553138 36553231 -115984028 + MER63D DNA AcHobo 281 374 -687 5 863 393 271 51 36 chr5 36555064 36555202 -115982057 + MLT1A1 LTR MaLR 269 408 0 5 863 341 341 131 6 chr5 36555641 36555824 -115981435 - MIRb SINE MIR -37 231 26 5 863 263 314 93 93 chr5 36556809 36556981 -115980278 + MLT1J2 LTR MaLR 157 328 -120 5 863 376 144 163 9 chr5 36557642 36557748 -115979511 - B2_Mm2 SINE B2 -6 187 47 6 863 1257 92 0 0 chr5 36557798 36557972 -115979287 - B2_Mm2 SINE B2 -21 174 1 6 863 783 286 14 27 chr5 36558329 36558536 -115978723 + MTEa LTR MaLR 1 206 -173 6 863 959 107 12 12 chr5 36558536 36558707 -115978552 + (TC)n Simple_repeat Simple_repeat 1 171 0 6 863 783 286 14 27 chr5 36558707 36558722 -115978537 + MTEa LTR MaLR 207 220 -159 6 863 490 151 28 34 chr5 36558744 36558922 -115978337 + CT-rich Low_complexity Low_complexity 1 177 0 6 863 342 356 0 14 chr5 36558925 36559073 -115978186 + C-rich Low_complexity Low_complexity 3 148 0 6 863 699 195 88 21 chr5 36559078 36559261 -115977998 + MTEa LTR MaLR 163 376 -3 6 863 271 345 28 21 chr5 36559616 36559758 -115977501 + L1M5 LINE L1 5731 5873 -251 6 863 231 36 0 0 chr5 36561226 36561254 -115976005 + (TGGG)n Simple_repeat Simple_repeat 1 28 0 6 863 242 217 54 6 chr5 36561320 36561487 -115975772 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 6 863 280 286 38 25 chr5 36561529 36561687 -115975572 + (TGAA)n Simple_repeat Simple_repeat 2 161 0 7 863 802 205 422 59 chr5 36561697 36561957 -115975302 - ORR1E LTR MaLR -2 357 4 7 863 280 278 46 29 chr5 36561960 36562134 -115975125 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 7 863 538 82 24 0 chr5 36562195 36562280 -115974979 + (TGGA)n Simple_repeat Simple_repeat 3 89 0 7 863 405 0 0 0 chr5 36563294 36563339 -115973920 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 863 198 208 0 0 chr5 36565872 36565920 -115971339 + (TCCA)n Simple_repeat Simple_repeat 3 50 0 7 863 228 219 0 0 chr5 36565957 36565998 -115971261 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 863 234 243 57 0 chr5 36565996 36566066 -115971193 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 7 863 201 315 40 14 chr5 36566459 36566533 -115970726 + MER5A DNA MER1_type 16 91 -98 7 863 966 277 28 42 chr5 36567657 36567940 -115969319 + B4 SINE B4 1 279 -13 7 864 559 147 0 21 chr5 36569555 36569652 -115967607 + RMER10A LTR ERVL 2 96 -346 7 864 602 215 109 48 chr5 36569648 36569858 -115967401 + RMER10A LTR ERVL 220 442 0 7 864 951 233 0 0 chr5 36570301 36570460 -115966799 - RSINE1 SINE B4 -4 161 3 8 864 440 244 34 25 chr5 36570921 36571039 -115966220 + PB1D7 SINE Alu 1 119 -1 8 864 636 275 140 3 chr5 36572172 36572500 -115964759 + MTEa LTR MaLR 3 375 -4 8 864 594 0 0 0 chr5 36572827 36572893 -115964366 + (GA)n Simple_repeat Simple_repeat 1 66 0 8 864 1721 176 59 59 chr5 36573825 36574199 -115963060 + ORR1D1 LTR MaLR 1 374 0 8 864 184 382 49 0 chr5 36574862 36574964 -115962295 - MIRc SINE MIR -116 152 46 8 864 204 125 0 0 chr5 36575235 36575267 -115961992 + (TTTTC)n Simple_repeat Simple_repeat 1 32 0 8 864 3397 93 43 31 chr5 36575298 36575806 -115961453 - Lx LINE L1 0 6654 6141 8 864 2197 100 0 9 chr5 36577350 36577672 -115959587 - ORR1A2 LTR MaLR -8 319 1 8 864 215 307 78 16 chr5 36578184 36578313 -115958946 - MIR SINE MIR -73 189 53 8 864 466 88 0 42 chr5 36580141 36580212 -115957047 + IAPLTR4 LTR ERVK 278 345 0 9 864 712 204 34 39 chr5 36580258 36580437 -115956822 - Lx6 LINE L1 -27 7433 7256 9 864 33761 37 2 0 chr5 36580433 36587572 -115949687 + L1Md_T LINE L1 1 5589 -297 9 864 9130 6 0 6 chr5 36587572 36588574 -115948685 + L1Md_T LINE L1 5590 6585 0 9 864 935 245 84 22 chr5 36588574 36588829 -115948430 - Lx6 LINE L1 -182 7278 7005 9 864 1648 126 111 21 chr5 36589657 36589982 -115947277 + ORR1B1 LTR MaLR 41 394 0 9 864 216 339 37 0 chr5 36590001 36590110 -115947149 + (TTAGGG)n Simple_repeat Simple_repeat 2 114 0 9 864 240 122 0 0 chr5 36590156 36590197 -115947062 + (TTAGGG)n Simple_repeat Simple_repeat 2 42 0 9 864 289 240 102 74 chr5 36591040 36591239 -115946020 - MIR SINE MIR -58 204 4 9 864 967 109 6 6 chr5 36592312 36592469 -115944790 + (TTCTCC)n Simple_repeat Simple_repeat 6 162 0 9 864 1131 56 28 0 chr5 36592619 36592762 -115944497 - B1_Mus2 SINE Alu 0 147 1 9 864 24 0 0 0 chr5 36593303 36593327 -115943932 + AT_rich Low_complexity Low_complexity 1 24 0 9 864 849 178 19 30 chr5 36594157 36594344 -115942915 - ORR1A4 LTR MaLR -168 226 3 9 864 1400 261 49 14 chr5 36595084 36595434 -115941825 + MTEa LTR MaLR 1 362 -17 1 864 252 280 51 51 chr5 36596451 36596530 -115940729 - ID4_ SINE ID -3 80 2 1 864 919 0 18 0 chr5 36598407 36598518 -115938741 + (GA)n Simple_repeat Simple_repeat 2 114 0 1 864 253 276 0 17 chr5 36598676 36598735 -115938524 + polypurine Low_complexity Low_complexity 1 58 0 1 864 826 276 106 67 chr5 36598737 36599067 -115938192 - MTD LTR MaLR 0 419 77 1 864 473 291 55 32 chr5 36599072 36599292 -115937967 + L1M5 LINE L1 5305 5529 -650 1 864 4942 165 32 5 chr5 36599378 36600181 -115937078 - Lx5 LINE L1 0 7050 6226 1 864 601 182 9 0 chr5 36600379 36600489 -115936770 + URR1A DNA MER1_type 7 117 -109 1 864 261 305 53 0 chr5 36601142 36601237 -115936022 - MIRc SINE MIR -63 205 106 1 864 468 0 0 0 chr5 36602210 36602262 -115934997 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 864 180 212 102 34 chr5 36603023 36603111 -115934148 - MIRc SINE MIR -136 132 39 1 864 194 147 0 0 chr5 36604050 36604084 -115933175 - MIR SINE MIR -140 122 89 1 864 297 0 0 0 chr5 36604651 36604684 -115932575 + (CAGA)n Simple_repeat Simple_repeat 3 35 0 1 864 1134 61 0 0 chr5 36605056 36605203 -115932056 + (GGA)n Simple_repeat Simple_repeat 3 149 0 1 864 360 264 11 0 chr5 36606203 36606294 -115930965 + (TGG)n Simple_repeat Simple_repeat 3 94 0 1 864 444 240 17 97 chr5 36606296 36606471 -115930788 - HAL1-2a_MD LINE L1 -522 2502 2342 1 864 576 294 37 16 chr5 36606495 36606685 -115930574 - HAL1-2a_MD LINE L1 -505 2519 2326 1 864 238 274 14 0 chr5 36606693 36606839 -115930420 + (TGG)n Simple_repeat Simple_repeat 1 148 0 1 864 775 301 75 99 chr5 36607357 36607730 -115929529 - MTEa LTR MaLR -11 368 5 1 864 265 207 107 83 chr5 36612228 36612349 -115924910 + MLT1B LTR MaLR 106 229 -161 1 864 2009 128 25 25 chr5 36613216 36613569 -115923690 - ORR1B1 LTR MaLR 0 394 42 1 864 355 214 36 83 chr5 36613705 36613873 -115923386 + HAL1-2a_MD LINE L1 2340 2499 -525 1 864 292 213 51 79 chr5 36613956 36614134 -115923125 + (CACCAT)n Simple_repeat Simple_repeat 1 173 0 1 864 330 240 55 67 chr5 36614785 36614950 -115922309 + HAL1-2a_MD LINE L1 2340 2502 -522 1 864 645 272 128 17 chr5 36616015 36616303 -115920956 + MLT1A0 LTR MaLR 33 352 -13 1 864 257 318 99 51 chr5 36616313 36616625 -115920634 - L2a LINE L2 -123 3303 2977 1 864 588 29 0 0 chr5 36617594 36617664 -115919595 + (TCCC)n Simple_repeat Simple_repeat 1 70 0 1 864 231 274 0 0 chr5 36619511 36619573 -115917686 + L2c LINE L2 3321 3382 -5 1 864 229 344 33 13 chr5 36619577 36619730 -115917529 + (TGGG)n Simple_repeat Simple_repeat 1 156 0 1 864 243 0 0 0 chr5 36619734 36619761 -115917498 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 1 864 601 206 6 17 chr5 36619873 36619932 -115917327 + (TGGG)n Simple_repeat Simple_repeat 2 60 0 1 864 1002 138 0 0 chr5 36619932 36620106 -115917153 + (TGGA)n Simple_repeat Simple_repeat 1 174 0 1 864 601 206 6 17 chr5 36620106 36620219 -115917040 + (TGGG)n Simple_repeat Simple_repeat 2 113 0 1 864 1252 253 86 26 chr5 36620388 36620770 -115916489 - MTD LTR MaLR -14 405 1 1 864 206 280 0 20 chr5 36620868 36620919 -115916340 + polypurine Low_complexity Low_complexity 6 55 0 1 864 312 27 0 0 chr5 36621308 36621345 -115915914 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 864 366 23 0 0 chr5 36621707 36621750 -115915509 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 864 199 167 0 77 chr5 36621784 36621836 -115915423 - L2b LINE L2 -24 3351 3304 1 864 344 22 22 0 chr5 36622977 36623022 -115914237 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 864 1250 41 14 0 chr5 36623105 36623251 -115914008 + B1_Mus1 SINE Alu 1 148 0 1 864 309 314 112 6 chr5 36623318 36623478 -115913781 + MIRb SINE MIR 89 265 -3 1 864 407 216 106 19 chr5 36624434 36624538 -115912721 + RSINE1 SINE B4 21 133 -32 1 864 567 319 157 9 chr5 36624812 36625265 -115911994 + L1M4 LINE L1 2427 2946 -3200 1 864 1092 259 35 7 chr5 36628685 36628969 -115908290 + B4 SINE B4 1 292 0 1 864 206 304 0 18 chr5 36630485 36630542 -115906717 + MIRb SINE MIR 49 104 -164 1 864 386 344 78 70 chr5 36630820 36630841 -115906418 + MLT1B LTR MaLR 3 23 -367 1 864 2114 121 82 9 chr5 36630841 36631183 -115906076 + ORR1B2 LTR MaLR 1 367 0 1 864 386 344 78 70 chr5 36631183 36631546 -115905713 + MLT1B LTR MaLR 24 390 0 1 864 22 56 0 0 chr5 36632191 36632227 -115905032 + AT_rich Low_complexity Low_complexity 1 36 0 1 864 294 95 0 0 chr5 36632438 36632480 -115904779 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 1 864 1224 54 0 13 chr5 36634229 36634378 -115902881 + B1_Mus2 SINE Alu 1 147 0 1 864 225 0 0 0 chr5 36634378 36634403 -115902856 + (A)n Simple_repeat Simple_repeat 1 25 0 1 864 317 284 69 0 chr5 36637628 36637730 -115899529 + MER5A1 DNA MER1_type 22 130 -36 1 864 186 43 0 0 chr5 36639291 36639314 -115897945 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 864 1017 72 13 7 chr5 36639330 36639484 -115897775 - L1_Mus3 LINE L1 -1 6637 6483 1 864 258 317 29 29 chr5 36639964 36640068 -115897191 + MIRb SINE MIR 95 198 -70 1 864 443 225 7 0 chr5 36642723 36642861 -115894398 + (TCCA)n Simple_repeat Simple_repeat 4 142 0 1 864 610 203 0 17 chr5 36642933 36643113 -115894146 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 1 864 207 253 151 0 chr5 36643114 36643229 -115894030 - MIR SINE MIR -14 254 107 1 864 352 224 26 0 chr5 36644220 36644296 -115892963 + MIRb SINE MIR 5 82 -186 1 864 938 246 102 49 chr5 36645056 36645360 -115891899 + MTEa LTR MaLR 10 329 -50 1 864 484 272 0 0 chr5 36645376 36645479 -115891780 - PB1D7 SINE Alu -15 105 3 1 864 360 0 0 0 chr5 36645545 36645585 -115891674 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 864 354 98 0 0 chr5 36646312 36646363 -115890896 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 1 864 357 24 0 0 chr5 36646831 36646873 -115890386 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 864 306 0 0 0 chr5 36646873 36646907 -115890352 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 864 764 261 93 50 chr5 36647743 36648021 -115889238 + B4A SINE B4 1 290 -2 1 864 767 205 59 142 chr5 36648698 36648919 -115888340 - URR1A DNA MER1_type 0 226 25 1 864 378 0 0 0 chr5 36648919 36648961 -115888298 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 864 767 205 59 142 chr5 36648961 36648978 -115888281 - URR1A DNA MER1_type -202 24 8 1 864 799 308 41 38 chr5 36650426 36650770 -115886489 - MLT1B LTR MaLR -43 347 3 1 864 633 236 7 28 chr5 36651314 36651458 -115885801 - RSINE1 SINE B4 -18 147 7 1 864 821 10 10 0 chr5 36652020 36652118 -115885141 + (TGGA)n Simple_repeat Simple_repeat 1 99 0 1 864 331 300 7 35 chr5 36652126 36652271 -115884988 + GA-rich Low_complexity Low_complexity 3 143 0 1 864 218 280 13 21 chr5 36652277 36652518 -115884741 + (TGGA)n Simple_repeat Simple_repeat 1 238 0 1 864 401 262 18 45 chr5 36653266 36653378 -115883881 - PB1D7 SINE Alu -2 118 10 1 864 347 331 65 5 chr5 36653574 36653759 -115883500 + L1M5 LINE L1 5578 5773 -391 1 864 216 325 13 13 chr5 36654486 36654564 -115882695 - ID4_ SINE ID 0 83 6 1 864 300 27 0 0 chr5 36654924 36654961 -115882298 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 864 206 200 62 62 chr5 36655472 36655536 -115881723 + MIR SINE MIR 86 149 -59 1 864 216 0 0 0 chr5 36655937 36655961 -115881298 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 864 321 338 0 0 chr5 36655998 36656158 -115881101 + (CA)n Simple_repeat Simple_repeat 2 161 0 1 864 627 179 0 25 chr5 36657419 36657539 -115879720 + PB1D10 SINE Alu 1 117 0 1 864 473 298 11 45 chr5 36659068 36659244 -115878015 - B4A SINE B4 -122 170 1 1 864 661 265 78 92 chr5 36660122 36660417 -115876842 + B4A SINE B4 2 292 0 1 864 411 301 124 65 chr5 36660470 36660687 -115876572 + B4 SINE B4 40 269 -23 1 864 420 82 0 0 chr5 36660687 36660748 -115876511 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 864 648 111 0 0 chr5 36661372 36661480 -115875779 + (CA)n Simple_repeat Simple_repeat 2 109 0 1 864 467 250 115 16 chr5 36661506 36661697 -115875562 - L2a LINE L2 -3 3423 3214 1 864 3068 123 77 8 chr5 36662060 36662553 -115874706 + RLTR11A LTR ERVK 2 528 0 1 864 211 341 68 0 chr5 36662590 36662678 -115874581 + L2a LINE L2 3306 3399 -27 1 864 227 331 144 52 chr5 36664981 36665175 -115872084 - MER115 DNA Tip100 -449 244 33 1 864 220 304 52 52 chr5 36665785 36665882 -115871377 - MIRb SINE MIR -78 190 94 1 864 182 212 8 58 chr5 36667188 36667308 -115869951 + GA-rich Low_complexity Low_complexity 3 116 0 1 864 249 191 14 56 chr5 36669304 36669376 -115867883 + CT-rich Low_complexity Low_complexity 3 71 0 1 864 288 0 0 0 chr5 36669941 36669973 -115867286 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 864 537 16 0 0 chr5 36671275 36671337 -115865922 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 864 197 255 20 0 chr5 36671848 36671899 -115865360 - MIRm SINE MIR -133 143 92 1 864 2734 143 19 5 chr5 36671989 36672404 -115864855 + MTC LTR MaLR 1 421 0 1 864 343 238 12 12 chr5 36672922 36673003 -115864256 + B4A SINE B4 1 81 -211 1 864 218 56 28 0 chr5 36673014 36673050 -115864209 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 1 864 439 262 151 16 chr5 36673059 36673245 -115864014 + B4A SINE B4 82 292 0 1 864 201 39 0 0 chr5 36673255 36673281 -115863978 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 864 226 327 25 116 chr5 36673622 36673786 -115863473 - L2b LINE L2 -3 3423 3275 1 864 21 0 0 0 chr5 36674869 36674890 -115862369 + AT_rich Low_complexity Low_complexity 1 21 0 1 864 855 138 233 11 chr5 36674894 36675070 -115862189 - B3 SINE B2 0 216 2 2 864 718 240 11 86 chr5 36675305 36675376 -115861883 - B4 SINE B4 -3 289 229 2 864 1401 81 11 0 chr5 36675376 36675562 -115861697 - B2_Mm1t SINE B2 -5 188 1 2 864 718 238 231 82 chr5 36675562 36675741 -115861518 - B4 SINE B4 -64 228 17 2 864 334 197 14 40 chr5 36676548 36676622 -115860637 + Lx8 LINE L1 6390 6461 -1012 2 864 351 0 0 0 chr5 36677151 36677190 -115860069 + (T)n Simple_repeat Simple_repeat 1 39 0 2 864 235 200 80 0 chr5 36678027 36678077 -115859182 + L4 LINE RTE 1781 1834 -195 2 864 276 269 0 0 chr5 36678616 36678720 -115858539 + GA-rich Low_complexity Low_complexity 3 106 0 2 864 573 196 18 18 chr5 36679537 36679651 -115857608 + PB1D7 SINE Alu 1 114 -6 2 864 328 256 48 12 chr5 36683270 36683353 -115853906 + RSINE1 SINE B4 4 89 -76 2 864 204 40 0 0 chr5 36683381 36683406 -115853853 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 2 864 263 305 172 23 chr5 36683878 36684179 -115853080 - L2a LINE L2 -259 3167 2827 2 864 327 173 0 0 chr5 36684316 36684397 -115852862 + (TGGA)n Simple_repeat Simple_repeat 2 82 0 2 864 824 147 7 3 chr5 36684413 36684703 -115852556 + (TGGA)n Simple_repeat Simple_repeat 1 291 0 2 864 220 222 14 14 chr5 36685478 36685551 -115851708 + GA-rich Low_complexity Low_complexity 2 74 0 2 864 2485 104 3 9 chr5 36686295 36686626 -115850633 + ORR1A4 LTR MaLR 1 329 0 2 864 544 299 31 91 chr5 36686853 36687084 -115850175 + MTE2a LTR MaLR 126 365 -56 2 864 439 274 30 80 chr5 36687122 36687396 -115849863 + L1MA4 LINE L1 5749 6012 -144 2 864 201 270 78 29 chr5 36688382 36688485 -115848774 + L2b LINE L2 3180 3287 -88 2 864 246 105 0 0 chr5 36688537 36688575 -115848684 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 2 864 648 120 0 0 chr5 36688579 36688679 -115848580 + (GGAA)n Simple_repeat Simple_repeat 4 103 0 2 864 216 244 0 0 chr5 36689315 36689356 -115847903 + polypyrimidine Low_complexity Low_complexity 3 43 0 2 864 314 301 25 15 chr5 36689807 36690019 -115847240 + (TGGA)n Simple_repeat Simple_repeat 1 214 0 2 864 445 174 35 0 chr5 36690137 36690201 -115847058 + (TAGA)n Simple_repeat Simple_repeat 1 80 -196 2 864 235 229 0 0 chr5 36690201 36690249 -115847010 + (CATA)n Simple_repeat Simple_repeat 1 48 0 2 864 445 174 35 0 chr5 36690249 36690404 -115846855 + (TAGA)n Simple_repeat Simple_repeat 81 276 0 2 864 408 40 0 0 chr5 36690496 36690546 -115846713 + (GGGA)n Simple_repeat Simple_repeat 3 52 0 2 864 351 265 12 0 chr5 36693241 36693324 -115843935 + MIR SINE MIR 49 132 -130 2 864 912 242 72 15 chr5 36695616 36695880 -115841379 + B4 SINE B4 2 280 -12 2 864 185 220 173 39 chr5 36696086 36696190 -115841069 + L2a LINE L2 3017 3134 -292 2 864 365 290 98 80 chr5 36696439 36696682 -115840577 + MLT1J LTR MaLR 130 443 -167 2 864 209 119 24 0 chr5 36697101 36697143 -115840116 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 864 270 261 0 98 chr5 36697244 36697346 -115839913 + MLT1J LTR MaLR 407 498 -97 2 864 251 206 0 31 chr5 36697783 36697824 -115839435 + T-rich Low_complexity Low_complexity 23 63 0 2 864 303 49 0 0 chr5 36697824 36697865 -115839394 + (TTGG)n Simple_repeat Simple_repeat 3 43 0 2 864 251 206 0 31 chr5 36697865 36697888 -115839371 + T-rich Low_complexity Low_complexity 1 22 0 2 864 276 243 110 4 chr5 36699152 36699275 -115837984 + MIRb SINE MIR 69 203 -65 2 864 828 146 0 0 chr5 36699971 36700149 -115837110 + (GA)n Simple_repeat Simple_repeat 1 178 0 2 865 266 275 37 80 chr5 36700219 36700381 -115836878 - MIRm SINE MIR -83 193 39 2 865 321 273 148 20 chr5 36703606 36703707 -115833552 + MER68 LTR ERVL 186 299 -264 2 865 275 312 118 0 chr5 36703731 36703875 -115833384 + MER68 LTR ERVL 363 523 -40 2 865 254 226 39 106 chr5 36705410 36705514 -115831745 - MER53 DNA hAT -1 192 96 2 865 390 318 12 38 chr5 36705552 36705712 -115831547 + MER53 DNA hAT 37 192 -1 2 865 1032 84 0 0 chr5 36706417 36706559 -115830700 - B1_Mus1 SINE Alu 0 148 7 2 865 216 0 0 0 chr5 36706573 36706597 -115830662 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2 865 912 249 55 0 chr5 36706598 36706799 -115830460 - ID_B1 SINE B4 -5 219 8 2 865 662 204 128 17 chr5 36707587 36707662 -115829597 + MTEb LTR MaLR 1 84 -295 2 865 189 0 0 0 chr5 36707662 36707683 -115829576 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 865 662 204 128 17 chr5 36707683 36707786 -115829473 + MTEb LTR MaLR 85 198 -181 2 865 387 0 0 0 chr5 36707786 36707829 -115829430 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 865 264 59 0 0 chr5 36707832 36707866 -115829393 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 2 865 1236 38 0 0 chr5 36707867 36708025 -115829234 - B2_Mm2 SINE B2 -37 158 1 2 865 198 191 0 0 chr5 36708079 36708121 -115829138 + GA-rich Low_complexity Low_complexity 1 42 0 2 865 189 0 0 0 chr5 36708998 36709019 -115828240 + (A)n Simple_repeat Simple_repeat 1 21 0 2 865 225 281 11 63 chr5 36709035 36709130 -115828129 + PB1D10 SINE Alu 5 94 -23 2 865 221 167 0 0 chr5 36709263 36709299 -115827960 - MIRc SINE MIR -115 153 118 2 865 228 343 40 0 chr5 36710581 36710680 -115826579 + L2a LINE L2 3322 3424 -2 2 865 1832 192 111 29 chr5 36712600 36712986 -115824273 - MTD LTR MaLR -1 418 1 2 865 392 246 2 9 chr5 36713149 36713270 -115823989 + B4 SINE B4 1 118 -106 2 865 875 177 166 0 chr5 36713335 36713510 -115823749 + B3 SINE B2 1 204 -12 2 865 1764 167 56 61 chr5 36714711 36714879 -115822380 + ORR1D1 LTR MaLR 1 176 -198 2 865 297 0 0 0 chr5 36714879 36714912 -115822347 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 865 279 0 0 0 chr5 36714912 36714942 -115822317 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 865 1764 167 56 61 chr5 36714942 36715148 -115822111 + ORR1D1 LTR MaLR 177 373 -1 2 865 538 249 87 0 chr5 36715257 36715430 -115821829 + MLT1B LTR MaLR 119 306 -84 2 865 297 0 0 0 chr5 36715908 36715941 -115821318 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 865 509 269 135 21 chr5 36717311 36717548 -115819711 - L1MB5 LINE L1 -243 5931 5663 2 865 1456 63 5 16 chr5 36717676 36717868 -115819391 - B2_Mm2 SINE B2 -4 191 2 2 865 1001 96 67 0 chr5 36718293 36718428 -115818831 - B1_Mus1 SINE Alu -3 145 2 2 865 201 74 0 0 chr5 36718863 36718890 -115818369 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2 865 748 260 0 33 chr5 36721012 36721195 -115816064 + B3A SINE B2 6 182 -16 2 865 359 89 0 18 chr5 36721279 36721336 -115815923 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 865 219 36 0 0 chr5 36721337 36721365 -115815894 + (GA)n Simple_repeat Simple_repeat 2 29 0 2 865 327 115 0 37 chr5 36722076 36722130 -115815129 + HAL1-3A_ME LINE L1 1961 2012 -846 2 865 546 216 0 0 chr5 36722136 36722312 -115814947 + (CA)n Simple_repeat Simple_repeat 1 176 0 2 865 267 356 156 11 chr5 36724288 36724467 -115812792 + MLT1K LTR MaLR 385 589 -6 2 865 627 167 33 0 chr5 36724711 36724929 -115812330 + (CA)n Simple_repeat Simple_repeat 1 225 0 2 865 279 0 0 0 chr5 36725917 36725948 -115811311 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 865 392 361 52 5 chr5 36729324 36729516 -115807743 + Charlie4a DNA MER1_type 63 263 -245 2 865 1062 317 124 12 chr5 36730352 36730860 -115806399 + L1MB3 LINE L1 5591 6155 -28 2 865 641 275 20 26 chr5 36730938 36731091 -115806168 - RSINE1 SINE B4 -12 153 2 2 865 232 366 21 0 chr5 36733061 36733154 -115804105 + L2a LINE L2 3324 3418 -8 2 865 218 304 38 0 chr5 36733747 36733826 -115803433 - MIR3 SINE MIR -20 188 107 2 865 352 331 83 12 chr5 36736623 36736791 -115800468 + MLT1B LTR MaLR 21 200 -190 2 865 198 71 0 0 chr5 36740565 36740593 -115796666 + (CAG)n Simple_repeat Simple_repeat 1 28 0 2 865 789 11 0 0 chr5 36740941 36741031 -115796228 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 2 865 29 0 0 0 chr5 36742232 36742261 -115794998 + AT_rich Low_complexity Low_complexity 1 29 0 2 865 224 228 70 81 chr5 36742351 36742437 -115794822 - MIRc SINE MIR -99 169 85 2 865 205 238 288 20 chr5 36743111 36743257 -115794002 - L2 LINE L2 -567 2852 2668 2 865 321 369 45 6 chr5 36744036 36744213 -115793046 + MER5A DNA MER1_type 3 186 -3 2 865 186 308 60 60 chr5 36744283 36744366 -115792893 + MER5B DNA MER1_type 96 178 0 2 865 458 34 34 0 chr5 36744458 36744517 -115792742 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 2 865 973 180 0 10 chr5 36744519 36744813 -115792446 + CT-rich Low_complexity Low_complexity 1 290 0 2 865 614 204 53 0 chr5 36744813 36744945 -115792314 - B1F1 SINE Alu -8 141 3 2 865 219 254 0 48 chr5 36745949 36746011 -115791248 - L2b LINE L2 -1 3374 3316 2 865 290 267 57 9 chr5 36746687 36746793 -115790466 - MER103 DNA DNA -47 119 9 2 865 557 12 0 47 chr5 36746974 36747060 -115790199 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 865 355 274 6 6 chr5 36748524 36748700 -115788559 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 2 865 641 157 9 28 chr5 36748726 36748952 -115788307 + (TGGA)n Simple_repeat Simple_repeat 1 221 0 2 865 390 352 6 22 chr5 36748969 36749149 -115788110 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 2 865 215 393 26 13 chr5 36749159 36749311 -115787948 + (TGGG)n Simple_repeat Simple_repeat 3 156 0 2 865 1213 35 7 0 chr5 36750177 36750319 -115786940 + B1_Mm SINE Alu 5 147 0 2 865 816 329 105 47 chr5 36750521 36751190 -115786069 + L1M4c LINE L1 1008 1685 -4699 2 865 576 0 0 0 chr5 36751271 36751335 -115785924 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2 865 2830 139 7 2 chr5 36751617 36752036 -115785223 - MTC LTR MaLR 0 421 1 2 865 314 243 107 0 chr5 36752056 36752159 -115785100 + L1M4c LINE L1 2239 2352 -4126 2 865 966 300 130 35 chr5 36752174 36752223 -115785036 + L1M4c LINE L1 2379 2428 -3954 2 865 2794 19 75 0 chr5 36752223 36752545 -115784714 + ORR1A1 LTR MaLR 1 346 0 2 865 966 300 130 35 chr5 36752545 36753317 -115783942 + L1M4c LINE L1 2429 3277 -3105 2 865 375 294 141 79 chr5 36753298 36753481 -115783778 + L1M4c LINE L1 3384 3580 -2802 2 865 288 270 119 10 chr5 36753481 36753582 -115783677 + PB1D10 SINE Alu 1 112 -5 2 865 375 294 141 79 chr5 36753582 36753789 -115783470 + L1M4c LINE L1 3581 3798 -2584 2 865 971 123 20 175 chr5 36754099 36754345 -115782914 - ORR1B1 LTR MaLR -186 208 1 2 865 204 40 0 0 chr5 36754351 36754376 -115782883 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 2 865 425 258 0 41 chr5 36754377 36754474 -115782785 + RSINE1 SINE B4 4 96 -69 3 865 1291 95 11 22 chr5 36754591 36754774 -115782485 + B2_Mm1t SINE B2 4 184 -9 3 865 2066 118 13 3 chr5 36755015 36755330 -115781929 - ORR1A2 LTR MaLR -9 318 1 3 865 519 312 111 22 chr5 36755546 36755861 -115781398 + L1MB7 LINE L1 5842 6184 0 3 865 290 271 26 58 chr5 36755971 36756151 -115781108 - MIRc SINE MIR -92 184 9 3 865 255 316 13 113 chr5 36756484 36756634 -115780625 + MLT1C LTR MaLR 48 182 -285 3 865 464 270 18 9 chr5 36756636 36756748 -115780511 + B4A SINE B4 2 114 -178 3 865 1559 185 183 12 chr5 36756750 36757073 -115780186 - ORR1C1 LTR MaLR 0 378 1 3 865 353 304 76 63 chr5 36757118 36757229 -115780030 + MLT1C LTR MaLR 94 200 -267 3 865 528 59 0 0 chr5 36757229 36757297 -115779962 + (GA)n Simple_repeat Simple_repeat 2 69 0 3 865 353 304 76 63 chr5 36757297 36757487 -115779772 + MLT1C LTR MaLR 201 399 -68 3 865 240 35 0 0 chr5 36758270 36758299 -115778960 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 865 406 314 143 12 chr5 36758332 36758552 -115778707 + MLT2B1 LTR ERVL 181 429 -91 3 865 514 144 56 4 chr5 36758577 36758784 -115778475 + (TAGA)n Simple_repeat Simple_repeat 1 217 0 3 865 204 40 0 0 chr5 36758784 36758809 -115778450 + (ATG)n Simple_repeat Simple_repeat 2 26 0 3 865 241 186 71 10 chr5 36758809 36758818 -115778441 + (TAGA)n Simple_repeat Simple_repeat 2 10 0 3 865 183 42 0 0 chr5 36758857 36758881 -115778378 + (TGGA)n Simple_repeat Simple_repeat 1 24 0 3 865 264 308 22 11 chr5 36758910 36759002 -115778257 + L1MB3 LINE L1 6084 6176 -7 3 865 363 147 40 13 chr5 36759013 36759089 -115778170 - PB1D10 SINE Alu 0 117 40 3 865 275 287 100 60 chr5 36759338 36759538 -115777721 - ORR1D2 LTR MaLR -146 224 17 3 865 697 184 0 35 chr5 36759552 36759693 -115777566 - B1_Mur4 SINE Alu 0 150 15 3 865 394 165 0 117 chr5 36759602 36759705 -115777554 - MT2B LTR ERVL -344 257 167 3 865 308 283 9 57 chr5 36759700 36759805 -115777454 - MLT2B3 LTR ERVL -454 100 1 3 865 455 319 43 6 chr5 36760684 36760845 -115776414 + MLT1A LTR MaLR 1 167 -207 3 865 639 276 35 0 chr5 36760845 36761019 -115776240 + B3A SINE B2 3 182 -16 3 865 301 307 106 7 chr5 36761019 36761035 -115776224 + MLT1A LTR MaLR 179 194 -196 3 865 208 224 0 38 chr5 36761087 36761166 -115776093 + CT-rich Low_complexity Low_complexity 6 81 0 3 865 298 328 72 0 chr5 36761167 36761292 -115775967 + MLT1A LTR MaLR 225 358 -32 3 865 319 213 16 0 chr5 36761977 36762038 -115775221 + MTE2a LTR MaLR 276 337 -42 3 865 2673 124 8 0 chr5 36762152 36762514 -115774745 - ORR1B2 LTR MaLR 0 367 3 3 865 2254 123 47 33 chr5 36763274 36763636 -115773623 + ORR1B2 LTR MaLR 1 367 0 3 865 1087 231 140 0 chr5 36763792 36764056 -115773203 + ORR1D2 LTR MaLR 46 346 -24 3 865 289 313 128 7 chr5 36764048 36764196 -115773063 + MER67A LTR ERV1 338 503 -40 3 865 519 17 0 0 chr5 36764291 36764351 -115772908 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 865 392 312 88 42 chr5 36764440 36764657 -115772602 + MLT1A1 LTR MaLR 179 405 -3 3 865 498 280 24 8 chr5 36764817 36764943 -115772316 + RSINE1 SINE B4 20 147 -18 3 865 369 0 0 0 chr5 36766813 36766854 -115770405 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 865 453 249 116 49 chr5 36766925 36767149 -115770110 + MER44A DNA MER2_type 22 260 -79 3 865 297 68 0 0 chr5 36767347 36767391 -115769868 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 865 303 93 0 0 chr5 36767391 36767434 -115769825 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 865 361 314 24 16 chr5 36767452 36767575 -115769684 - RSINE1 SINE B4 -37 128 5 3 865 1073 138 86 0 chr5 36767669 36767685 -115769574 - B2_Mm1a SINE B2 -2 191 176 3 865 423 0 0 0 chr5 36767685 36767732 -115769527 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 3 865 1073 138 86 0 chr5 36767732 36767889 -115769370 - B2_Mm1a SINE B2 -18 175 4 3 865 750 206 49 7 chr5 36767919 36768061 -115769198 - B1_Mur1 SINE Alu -1 148 1 3 865 233 271 167 0 chr5 36769787 36769883 -115767376 + PB1D10 SINE Alu 4 115 -2 3 865 249 299 25 49 chr5 36769910 36770072 -115767187 + MIRb SINE MIR 84 241 -27 3 865 434 337 109 26 chr5 36771170 36771435 -115765824 + MER44B DNA MER2_type 6 292 -258 3 865 442 163 28 28 chr5 36771442 36771587 -115765672 + (TG)n Simple_repeat Simple_repeat 2 146 0 3 865 635 270 39 26 chr5 36771669 36771825 -115765434 + RSINE1 SINE B4 8 165 0 3 865 281 403 62 14 chr5 36771896 36772105 -115765154 + MER2 DNA MER2_type 123 341 -4 3 865 257 333 130 6 chr5 36772145 36772314 -115764945 - MLT2D LTR ERVL -52 362 173 3 865 466 99 21 42 chr5 36772493 36772588 -115764671 + (TCTCTG)n Simple_repeat Simple_repeat 2 94 0 3 865 185 291 48 13 chr5 36772662 36772760 -115764499 - MIR SINE MIR -110 166 71 3 865 3412 121 42 0 chr5 36773271 36773774 -115763485 + RLTR28 LTR ERVL 1 524 0 3 865 1021 231 19 9 chr5 36774057 36774267 -115762992 - B3 SINE B2 -3 213 2 3 865 660 247 47 0 chr5 36774275 36774445 -115762814 - B4A SINE B4 -69 223 46 3 865 2470 190 37 94 chr5 36774876 36774986 -115762273 - RMER1B Other Other -5 1061 945 3 865 189 0 0 0 chr5 36774986 36775007 -115762252 + (TAA)n Simple_repeat Simple_repeat 3 23 0 3 865 2470 195 37 92 chr5 36775007 36775504 -115761755 - RMER1B Other Other -122 944 227 3 865 247 319 11 87 chr5 36775603 36775788 -115761471 - ORR1E LTR MaLR -10 349 179 3 865 191 319 62 21 chr5 36776512 36776608 -115760651 - MIRm SINE MIR -121 155 56 3 865 405 0 0 0 chr5 36776691 36776736 -115760523 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 865 468 0 0 0 chr5 36776736 36776787 -115760472 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 865 279 239 0 0 chr5 36778468 36778556 -115758703 + (TATG)n Simple_repeat Simple_repeat 4 91 0 3 865 729 184 3 0 chr5 36778577 36778937 -115758322 + (TG)n Simple_repeat Simple_repeat 1 361 0 3 865 1107 115 0 13 chr5 36779054 36779204 -115758055 + B1_Mus1 SINE Alu 1 148 0 3 865 311 156 0 30 chr5 36779271 36779337 -115757922 + GA-rich Low_complexity Low_complexity 4 67 0 3 865 309 265 0 61 chr5 36779366 36779490 -115757769 + B1F1 SINE Alu 5 120 0 3 865 2502 121 79 35 chr5 36780123 36780526 -115756733 + MTC LTR MaLR 1 421 0 3 865 926 219 23 19 chr5 36780552 36780766 -115756493 + B3 SINE B2 1 215 -1 3 865 486 321 70 26 chr5 36781110 36781382 -115755877 - MTD LTR MaLR -135 284 1 3 865 235 332 102 63 chr5 36781678 36781932 -115755327 + ORR1E LTR MaLR 52 315 -44 3 865 258 234 47 0 chr5 36782389 36782453 -115754806 - B1F SINE Alu -70 79 13 3 865 181 233 200 0 chr5 36783053 36783113 -115754146 - MER5B DNA MER1_type -63 115 44 3 865 207 100 0 0 chr5 36783258 36783288 -115753971 + (CCA)n Simple_repeat Simple_repeat 3 32 0 3 865 995 129 0 7 chr5 36783323 36783471 -115753788 - B1_Mus1 SINE Alu 0 148 2 3 865 240 35 0 0 chr5 36783904 36783933 -115753326 + (TCCCC)n Simple_repeat Simple_repeat 1 29 0 3 865 238 343 42 0 chr5 36784550 36784578 -115752681 + B1F2 SINE Alu 21 148 -1 3 865 438 264 0 0 chr5 36784578 36784669 -115752590 + ID_B1 SINE B4 133 223 -1 3 865 190 312 89 52 chr5 36786217 36786352 -115750907 - MIRc SINE MIR -117 151 12 3 865 1487 201 34 50 chr5 36786410 36786788 -115750471 - MTE2b LTR MaLR 0 379 8 3 865 301 213 0 0 chr5 36786801 36786862 -115750397 - MTE2b-int LTR MaLR 0 1580 1520 3 865 865 254 30 10 chr5 36788823 36788904 -115748355 + B4A SINE B4 1 85 -207 3 865 413 274 0 66 chr5 36788904 36789041 -115748218 + B1F2 SINE Alu 1 128 -21 3 865 326 339 87 22 chr5 36789107 36789291 -115747968 + L1MB8 LINE L1 5109 5304 -842 3 865 761 334 60 42 chr5 36789378 36789505 -115747754 + L1MB8 LINE L1 5505 5646 -532 3 865 1007 210 206 91 chr5 36789505 36789845 -115747414 + MTEa LTR MaLR 1 379 0 3 865 761 334 60 42 chr5 36789845 36790148 -115747111 + L1MB8 LINE L1 5647 5943 -235 3 865 1014 199 5 43 chr5 36790178 36790251 -115747008 - MTC LTR MaLR 0 421 357 3 865 3422 156 72 2 chr5 36790251 36790821 -115746438 - RMER19C LTR ERVK -1 610 1 3 865 1014 168 395 22 chr5 36790821 36791073 -115746186 - MTC LTR MaLR -65 356 5 3 865 210 288 0 17 chr5 36791208 36791268 -115745991 - RSINE1 SINE B4 -8 157 99 3 865 235 302 173 25 chr5 36791489 36791643 -115745616 - MLT1C LTR MaLR -212 255 74 3 865 3395 20 13 10 chr5 36791643 36792038 -115745221 + MTA_Mm LTR MaLR 1 396 0 3 865 235 302 173 25 chr5 36792038 36792080 -115745179 - MLT1C LTR MaLR -394 73 30 3 865 347 289 67 0 chr5 36792278 36792382 -115744877 - PB1D7 SINE Alu -3 117 7 3 865 302 328 52 0 chr5 36792402 36792536 -115744723 - L1MB3 LINE L1 -2 6181 6041 3 865 491 261 231 33 chr5 36793230 36793412 -115743847 + B4A SINE B4 7 224 -68 3 865 21 0 0 0 chr5 36793502 36793523 -115743736 + GC_rich Low_complexity Low_complexity 1 21 0 3 865 297 0 0 0 chr5 36793569 36793602 -115743657 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 865 513 0 0 0 chr5 36793837 36793894 -115743365 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 865 457 186 41 0 chr5 36795109 36795206 -115742053 - PB1D10 SINE Alu 0 117 17 3 865 832 245 21 11 chr5 36795264 36795454 -115741805 + B3A SINE B2 2 193 -5 3 865 1173 231 184 0 chr5 36795725 36796045 -115741214 + MTEb LTR MaLR 1 379 0 3 865 817 216 7 20 chr5 36796507 36796658 -115740601 - B1_Mur2 SINE Alu 0 149 1 3 865 315 0 0 0 chr5 36796969 36797004 -115740255 + (CACCC)n Simple_repeat Simple_repeat 4 38 0 3 865 258 238 8 24 chr5 36797435 36797560 -115739699 + GA-rich Low_complexity Low_complexity 4 126 0 3 865 259 348 9 0 chr5 36798148 36798260 -115738999 + GA-rich Low_complexity Low_complexity 3 115 0 3 865 2261 154 25 12 chr5 36798319 36798720 -115738539 - RMER15 LTR ERVL -2 573 168 3 865 212 228 48 116 chr5 36799671 36799860 -115737399 + (CACCC)n Simple_repeat Simple_repeat 4 179 0 4 865 256 226 16 16 chr5 36800414 36800477 -115736782 + L1_Rod LINE L1 4024 4086 -1761 4 865 721 257 90 34 chr5 36800575 36800960 -115736299 + RLTR28 LTR ERVL 1 420 -61 4 865 231 390 0 0 chr5 36801582 36801682 -115735577 + (CA)n Simple_repeat Simple_repeat 2 101 0 4 865 387 0 0 0 chr5 36801888 36801931 -115735328 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 865 502 237 0 66 chr5 36802023 36802145 -115735114 + PB1D9 SINE Alu 7 120 0 4 865 230 260 88 38 chr5 36802408 36802488 -115734771 - ORR1D2 LTR MaLR -8 362 279 4 865 513 0 0 0 chr5 36802599 36802656 -115734603 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 865 242 242 16 0 chr5 36802819 36802881 -115734378 + B4 SINE B4 24 86 -206 4 865 220 205 0 0 chr5 36802881 36802920 -115734339 + GA-rich Low_complexity Low_complexity 4 42 0 4 865 192 217 0 0 chr5 36803268 36803314 -115733945 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 865 376 295 201 22 chr5 36804260 36804632 -115732627 - MLT1E3 LTR MaLR -186 494 2 4 865 1283 251 54 43 chr5 36804643 36805013 -115732246 - MTEa LTR MaLR -5 374 1 4 865 1722 240 92 6 chr5 36806362 36806853 -115730406 + RMER5 LTR ERV1 2 534 0 4 865 616 84 10 31 chr5 36806975 36807073 -115730186 - B1_Mur4 SINE Alu 0 150 55 4 865 684 221 128 31 chr5 36809109 36809305 -115727954 - B3 SINE B2 0 216 2 4 865 537 215 44 44 chr5 36809371 36809507 -115727752 + B3A SINE B2 8 143 -55 4 865 274 188 0 111 chr5 36809674 36809746 -115727513 + PB1D10 SINE Alu 17 80 -37 4 865 834 245 16 47 chr5 36809785 36809978 -115727281 + B3A SINE B2 1 187 -11 4 865 448 320 0 22 chr5 36809996 36810175 -115727084 + (CA)n Simple_repeat Simple_repeat 2 176 0 4 865 520 291 0 32 chr5 36810196 36810428 -115726831 + (CA)n Simple_repeat Simple_repeat 1 224 0 4 865 193 268 0 16 chr5 36810442 36810571 -115726688 + (CA)n Simple_repeat Simple_repeat 2 128 0 4 865 707 236 0 13 chr5 36810619 36810769 -115726490 + B1_Mur1 SINE Alu 2 149 0 4 865 461 299 111 22 chr5 36811149 36811330 -115725929 + B3 SINE B2 6 202 -14 4 865 569 254 16 16 chr5 36811429 36811557 -115725702 - RSINE1 SINE B4 -23 142 15 4 865 605 298 42 11 chr5 36811556 36811746 -115725513 - B4A SINE B4 -96 196 1 4 865 518 217 78 0 chr5 36811888 36812003 -115725256 - RSINE1 SINE B4 -31 134 11 4 865 184 233 135 14 chr5 36812632 36812706 -115724553 - MIRc SINE MIR -105 163 81 4 865 324 210 296 8 chr5 36814691 36814816 -115722443 - RLTR12B LTR ERVK -321 207 47 4 865 375 283 11 0 chr5 36815704 36815796 -115721463 + RSINE1 SINE B4 2 94 -71 4 865 389 250 201 49 chr5 36816895 36817059 -115720200 - MER5A DNA MER1_type 0 189 1 4 865 357 24 0 0 chr5 36819708 36819750 -115717509 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 865 405 0 0 0 chr5 36819750 36819794 -115717465 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 865 538 261 82 0 chr5 36821079 36821213 -115716046 - B4A SINE B4 0 292 148 4 865 1265 197 96 68 chr5 36824398 36824720 -115712539 - Lx6 LINE L1 -179 7281 6951 4 865 327 197 10 96 chr5 36826732 36826929 -115710330 + (CCG)n Simple_repeat Simple_repeat 1 180 0 4 865 267 169 0 0 chr5 36827669 36827740 -115709519 + GA-rich Low_complexity Low_complexity 2 72 0 4 865 830 272 47 33 chr5 36829480 36829754 -115707505 - B4A SINE B4 -1 291 14 4 865 697 194 29 22 chr5 36830838 36830975 -115706284 - B1_Mus2 SINE Alu 0 147 10 4 865 221 98 24 0 chr5 36831156 36831197 -115706062 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 866 236 212 75 15 chr5 36831289 36831356 -115705903 + ID4_ SINE ID 5 75 -8 4 866 508 131 259 9 chr5 36832862 36832970 -115704289 + B1_Mus1 SINE Alu 1 135 -13 4 866 229 277 0 58 chr5 36835047 36835116 -115702143 + RLTR46 LTR ERVK 240 304 -16 4 866 1184 48 7 0 chr5 36836941 36837086 -115700173 - B1_Mus2 SINE Alu 0 147 2 4 866 225 299 45 36 chr5 36837170 36837281 -115699978 - L1MB8 LINE L1 -1 6177 6066 4 866 639 262 21 0 chr5 36837291 36837436 -115699823 + RSINE1 SINE B4 3 150 -15 4 866 458 219 8 81 chr5 36838303 36838427 -115698832 - PB1D10 SINE Alu -2 115 1 4 866 733 285 139 9 chr5 36838553 36838769 -115698490 + B4 SINE B4 49 292 0 4 866 292 317 119 0 chr5 36838876 36838977 -115698282 + PB1 SINE Alu 11 123 -4 4 866 1132 165 19 54 chr5 36839323 36839528 -115697731 - B3A SINE B2 0 198 1 4 866 234 0 0 0 chr5 36840585 36840611 -115696648 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 866 7978 44 3 1 chr5 36840649 36841790 -115695469 - L1_Mus1 LINE L1 0 6567 5424 4 866 3247 51 8 0 chr5 36841835 36842228 -115695031 + MTA_Mm LTR MaLR 1 396 0 4 866 473 212 57 64 chr5 36842357 36842498 -115694761 - MLT1B LTR MaLR -48 342 203 4 866 283 245 18 66 chr5 36847929 36848056 -115689203 - MIR SINE MIR -101 167 52 4 866 411 300 9 18 chr5 36848686 36848798 -115688461 + PB1D10 SINE Alu 6 116 -1 4 866 363 195 24 42 chr5 36848983 36849090 -115688169 + PB1 SINE Alu 22 149 0 4 866 281 238 153 32 chr5 36849631 36849772 -115687487 + MIRb SINE MIR 24 176 -100 4 866 222 37 0 0 chr5 36851874 36851901 -115685358 + (GTTTG)n Simple_repeat Simple_repeat 3 29 0 4 866 198 0 0 0 chr5 36852027 36852049 -115685210 + (A)n Simple_repeat Simple_repeat 1 22 0 4 866 375 292 94 12 chr5 36852957 36853127 -115684132 - MIRc SINE MIR -82 186 3 4 866 388 291 28 48 chr5 36855501 36855715 -115681544 + L1MA8 LINE L1 5559 5769 -420 4 866 477 270 114 48 chr5 36855769 36855979 -115681280 + L1MA8 LINE L1 5895 6118 -173 4 866 913 46 0 0 chr5 36857173 36857282 -115679977 + B1_Mm SINE Alu 29 137 -10 4 866 275 0 0 28 chr5 36857282 36857318 -115679941 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 4 866 453 36 0 0 chr5 36857368 36857423 -115679836 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 4 866 292 225 90 0 chr5 36857423 36857512 -115679747 - Ricksha DNA MuDR -126 3120 3024 4 866 415 174 98 0 chr5 36857699 36857791 -115679468 - Ricksha DNA MuDR -446 2800 2700 4 866 505 90 0 0 chr5 36857791 36857858 -115679401 + Lx5 LINE L1 6462 6528 -522 4 866 302 261 0 0 chr5 36858252 36858317 -115678942 - Ricksha DNA MuDR -3059 187 123 4 866 257 328 49 8 chr5 36859395 36859518 -115677741 - RLTR12B LTR ERVK -400 128 1 4 866 293 321 54 54 chr5 36859729 36859877 -115677382 - RSINE1 SINE B4 -16 149 2 4 866 243 0 0 0 chr5 36859985 36860012 -115677247 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 866 584 173 44 26 chr5 36861281 36861394 -115675865 - PB1D7 SINE Alu -1 119 5 4 866 293 237 0 0 chr5 36861418 36861477 -115675782 - ID4_ SINE ID -11 72 14 4 866 216 0 0 0 chr5 36861524 36861548 -115675711 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 4 866 556 262 98 22 chr5 36863291 36863474 -115673785 + B4A SINE B4 9 205 -87 4 866 392 244 56 0 chr5 36863673 36863763 -115673496 - PB1D10 SINE Alu -18 99 5 4 866 931 248 24 10 chr5 36864009 36864217 -115673042 - B3 SINE B2 -5 211 1 4 866 650 314 79 17 chr5 36864329 36864569 -115672690 + MER2 DNA MER2_type 86 340 -5 4 866 415 236 153 24 chr5 36864578 36864933 -115672326 - L1MB3 LINE L1 0 6171 5768 4 866 234 0 0 0 chr5 36865087 36865113 -115672146 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 866 1047 55 0 52 chr5 36865113 36865255 -115672004 - B1_Mus2 SINE Alu -11 136 1 4 866 485 224 10 20 chr5 36865308 36865408 -115671851 - PB1D10 SINE Alu -15 102 4 4 866 408 296 109 43 chr5 36865768 36865975 -115671284 - ID_B1 SINE B4 -68 224 6 4 866 828 202 110 37 chr5 36866170 36866481 -115670778 + MTEa LTR MaLR 1 371 -8 4 866 351 0 0 0 chr5 36866811 36866850 -115670409 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 866 424 231 139 37 chr5 36866852 36866960 -115670299 - RSINE1 SINE B4 -43 122 4 4 866 216 0 0 0 chr5 36867243 36867267 -115669992 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 866 258 167 0 0 chr5 36869896 36869944 -115667315 + B3 SINE B2 167 214 -2 4 866 449 163 11 0 chr5 36871102 36871194 -115666065 + GA-rich Low_complexity Low_complexity 4 96 0 4 866 204 40 0 0 chr5 36871194 36871219 -115666040 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 4 866 229 299 204 0 chr5 36873974 36874195 -115663064 + L1M5 LINE L1 5508 5773 -406 4 866 1350 91 43 5 chr5 36875990 36876177 -115661082 + B2_Mm2 SINE B2 1 194 -1 4 866 296 311 108 32 chr5 36876566 36876813 -115660446 + MER2 DNA MER2_type 17 287 -58 4 866 464 274 113 10 chr5 36876918 36877121 -115660138 - L1MD LINE L1 -2130 4016 3793 4 866 1050 235 124 12 chr5 36877311 36877634 -115659625 - ORR1E LTR MaLR 0 359 1 4 866 257 326 34 23 chr5 36877681 36877857 -115659402 - L1MD LINE L1 -2700 3446 3269 4 866 1332 77 0 0 chr5 36877857 36878026 -115659233 + B2_Mm2 SINE B2 1 169 -26 4 866 488 0 48 0 chr5 36878043 36878105 -115659154 + (GAGAA)n Simple_repeat Simple_repeat 4 68 0 4 866 442 233 216 35 chr5 36878225 36878568 -115658691 - L1MEf LINE L1 -3049 3495 3091 4 866 522 139 0 0 chr5 36878839 36878925 -115658334 + (T)n Simple_repeat Simple_repeat 1 86 0 4 866 1227 35 14 0 chr5 36878937 36879081 -115658178 - B1_Mus1 SINE Alu -1 147 2 4 866 305 242 30 0 chr5 36879119 36879185 -115658074 - tRNA-Ala-GCY_ tRNA tRNA -4 71 4 4 866 752 308 137 61 chr5 36879237 36879993 -115657266 - L1MEf LINE L1 -3988 2652 1825 4 866 546 229 52 57 chr5 36879993 36880187 -115657072 - B3A SINE B2 -5 193 1 4 866 752 308 137 61 chr5 36880187 36880430 -115656829 - L1MEf LINE L1 -4816 1824 1577 4 866 207 136 45 0 chr5 36880505 36880549 -115656710 + T-rich Low_complexity Low_complexity 3 48 0 4 866 267 356 0 0 chr5 36880588 36880661 -115656598 - RSINE1 SINE B4 -82 83 11 5 866 277 297 103 0 chr5 36880767 36880942 -115656317 - L1MEf LINE L1 -5297 1343 1151 4 866 593 188 312 0 chr5 36881021 36881181 -115656078 - B3 SINE B2 -5 211 2 5 866 429 281 171 22 chr5 36881271 36881540 -115655719 - L1MEf LINE L1 -5574 973 665 4 866 553 199 223 51 chr5 36881674 36881849 -115655410 + B3 SINE B2 3 207 -9 5 866 362 304 271 12 chr5 36881903 36882143 -115655116 - L1MEf LINE L1 -6149 398 97 4 866 416 253 22 11 chr5 36882303 36882395 -115654864 - RSINE1 SINE B4 -5 160 68 5 866 287 274 73 73 chr5 36883787 36883897 -115653362 - RSINE1 SINE B4 -11 154 45 5 866 764 132 8 0 chr5 36883897 36884026 -115653233 + (TTTC)n Simple_repeat Simple_repeat 4 133 0 5 866 425 320 87 20 chr5 36884026 36884176 -115653083 - B4 SINE B4 -46 246 87 5 866 713 189 0 0 chr5 36884065 36884176 -115653083 - B1_Mus1 SINE Alu -36 112 2 5 866 568 112 224 0 chr5 36884849 36884956 -115652303 + B1_Mus1 SINE Alu 12 142 -6 5 866 271 233 92 11 chr5 36886190 36886277 -115650982 + MIRb SINE MIR 43 136 -132 5 866 483 264 27 60 chr5 36886670 36886819 -115650440 + B1F1 SINE Alu 1 144 -5 5 866 186 276 172 0 chr5 36887985 36888043 -115649216 + L2b LINE L2 3297 3364 -11 5 866 233 125 41 20 chr5 36888132 36888181 -115649078 + ORR1E LTR MaLR 21 70 -289 5 866 270 271 82 0 chr5 36888401 36888486 -115648773 + MTEa LTR MaLR 288 379 0 5 866 318 294 19 56 chr5 36888600 36888640 -115648619 + B4 SINE B4 2 40 -252 5 866 3136 71 13 2 chr5 36888640 36889036 -115648223 - MTB LTR MaLR 0 400 1 5 866 318 295 52 51 chr5 36889036 36889136 -115648123 + B4 SINE B4 39 153 -139 5 866 216 0 0 0 chr5 36891580 36891604 -115645655 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 866 210 71 0 0 chr5 36891722 36891750 -115645509 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 866 270 0 0 0 chr5 36891899 36891929 -115645330 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 866 188 289 19 19 chr5 36892523 36892576 -115644683 - L3 LINE CR1 -233 4256 4204 5 866 180 0 0 0 chr5 36893712 36893732 -115643527 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 866 429 122 0 0 chr5 36893732 36893805 -115643454 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 866 325 244 56 48 chr5 36893970 36894095 -115643164 - Arthur1C DNA Tip100 -1 362 237 5 866 182 286 118 21 chr5 36894404 36894497 -115642762 + L2a LINE L2 3298 3399 -27 5 866 559 236 120 63 chr5 36894523 36894661 -115642598 + ID_B1 SINE B4 58 205 -19 5 866 1419 75 21 0 chr5 36894661 36894848 -115642411 + B2_Mm2 SINE B2 1 191 -4 5 866 559 236 120 63 chr5 36894848 36894867 -115642392 + ID_B1 SINE B4 206 224 0 5 866 556 120 28 0 chr5 36896374 36896482 -115640777 + (GAAAA)n Simple_repeat Simple_repeat 4 114 0 5 866 1036 141 0 20 chr5 36896487 36896639 -115640620 + B1_Mur4 SINE Alu 1 149 -1 5 866 283 357 15 15 chr5 36896657 36896788 -115640471 + B3A SINE B2 9 139 -59 5 866 352 207 73 0 chr5 36896759 36896841 -115640418 + ID_B1 SINE B4 137 224 0 5 866 346 244 171 32 chr5 36896852 36896975 -115640284 + B1F SINE Alu 10 149 0 5 866 312 211 52 21 chr5 36897267 36897364 -115639895 + L1M5 LINE L1 3474 3573 -2573 5 866 265 301 116 36 chr5 36897740 36897878 -115639381 - RSINE1 SINE B4 -15 150 2 5 866 207 0 0 0 chr5 36897948 36897971 -115639288 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 866 843 273 172 93 chr5 36897981 36898047 -115639212 + L1M5 LINE L1 3875 3944 -2202 5 866 1646 26 0 16 chr5 36898047 36898240 -115639019 - B2_Mm1a SINE B2 -2 191 2 5 866 843 273 172 93 chr5 36898240 36898680 -115638579 + L1M5 LINE L1 3945 4418 -1728 5 866 696 264 7 0 chr5 36898680 36898824 -115638435 - RSINE1 SINE B4 -17 148 4 5 866 843 273 172 93 chr5 36898824 36899087 -115638172 + L1M5 LINE L1 4419 4706 -1440 5 866 300 355 140 0 chr5 36899416 36899509 -115637750 + PB1 SINE Alu 1 106 -21 5 866 252 333 40 0 chr5 36899609 36899684 -115637575 + ID4 SINE ID 6 83 0 5 866 332 287 82 100 chr5 36899685 36899785 -115637474 + L1M5 LINE L1 5312 5428 -745 5 866 1065 122 0 0 chr5 36899785 36899932 -115637327 + B1_Mus2 SINE Alu 1 147 0 5 866 332 287 82 100 chr5 36899932 36900110 -115637149 + L1M5 LINE L1 5429 5585 -588 5 866 239 222 0 69 chr5 36900657 36900715 -115636544 - RSINE1 SINE B4 -109 56 3 5 866 663 244 57 38 chr5 36901005 36901214 -115636045 + B3 SINE B2 1 213 -3 5 866 262 269 38 25 chr5 36903638 36903718 -115633541 - ID4 SINE ID -2 81 1 5 866 1264 68 73 0 chr5 36903863 36904040 -115633219 + B2_Mm2 SINE B2 1 190 -5 5 866 594 281 117 6 chr5 36904253 36904432 -115632827 + MER3 DNA MER1_type 11 209 0 5 866 245 273 90 69 chr5 36904590 36904779 -115632480 + L2a LINE L2 3063 3255 -171 5 866 234 0 0 0 chr5 36906342 36906368 -115630891 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 866 291 282 0 53 chr5 36906793 36906868 -115630391 + MLT1A0 LTR MaLR 2 72 -302 5 866 292 233 82 0 chr5 36906882 36906955 -115630304 + MLT1A0 LTR MaLR 114 192 -173 5 866 834 216 19 32 chr5 36906959 36907117 -115630142 + B3A SINE B2 1 156 -42 5 866 774 234 217 29 chr5 36907157 36907466 -115629793 + MTEb LTR MaLR 13 379 0 5 866 187 206 0 0 chr5 36907602 36907636 -115629623 + L2 LINE L2 1474 1507 -1912 5 866 225 0 0 0 chr5 36907638 36907663 -115629596 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 866 872 252 86 6 chr5 36907669 36907967 -115629292 + Lx2B LINE L1 5507 5809 -524 5 866 1295 244 63 75 chr5 36907972 36908495 -115628764 + Lx7 LINE L1 7036 7552 -144 5 866 232 284 0 11 chr5 36909229 36909318 -115627941 - LTR33B LTR ERVL -21 482 395 5 866 304 263 92 0 chr5 36910235 36910311 -115626948 - ID4 SINE ID 0 83 1 5 866 307 213 52 21 chr5 36910340 36910449 -115626810 - MIRm SINE MIR -114 154 47 5 866 361 254 184 0 chr5 36910893 36911007 -115626252 + MER20 DNA MER1_type 32 166 -53 5 866 2301 123 97 25 chr5 36911751 36912144 -115625115 + MTC LTR MaLR 1 421 0 5 866 234 241 132 0 chr5 36912360 36912454 -115624805 - MIRb SINE MIR -144 124 12 5 866 349 301 87 0 chr5 36914818 36914921 -115622338 + PB1D10 SINE Alu 1 112 -5 5 866 23 0 0 0 chr5 36914921 36914944 -115622315 + AT_rich Low_complexity Low_complexity 1 23 0 5 866 260 306 150 24 chr5 36916905 36917032 -115620227 + MIRb SINE MIR 50 192 -76 5 866 2297 148 68 8 chr5 36917498 36917893 -115619366 + MTC LTR MaLR 1 419 -2 5 866 191 336 75 28 chr5 36918396 36918503 -115618756 + L2c LINE L2 3268 3379 -8 5 866 194 62 31 0 chr5 36919200 36919232 -115618027 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 866 602 181 29 73 chr5 36920622 36920759 -115616500 - B1_Mur1 SINE Alu -2 147 17 5 866 1126 198 35 0 chr5 36921060 36921262 -115615997 - B3 SINE B2 -7 209 1 5 866 558 261 40 47 chr5 36921278 36921427 -115615832 + RSINE1 SINE B4 2 149 -16 5 866 182 91 30 0 chr5 36921429 36921462 -115615797 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 866 583 234 40 0 chr5 36921492 36921616 -115615643 + RSINE1 SINE B4 4 132 -33 5 866 22 70 0 0 chr5 36921616 36921659 -115615600 + AT_rich Low_complexity Low_complexity 1 43 0 5 866 603 323 53 13 chr5 36921669 36921895 -115615364 + MIR SINE MIR 20 254 -8 5 866 180 77 0 0 chr5 36922579 36922605 -115614654 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 866 249 324 18 53 chr5 36925948 36925963 -115611296 - B1_Mm SINE Alu -29 118 9 5 866 448 263 0 0 chr5 36925963 36926062 -115611197 - ID_B1 SINE B4 -36 188 90 5 866 893 141 50 75 chr5 36927040 36927239 -115610020 + B2_Mm2 SINE B2 2 195 0 5 866 186 43 0 0 chr5 36929015 36929038 -115608221 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 5 866 606 191 79 22 chr5 36929192 36929331 -115607928 - B1_Mus2 SINE Alu 0 147 1 5 866 207 88 0 0 chr5 36929479 36929513 -115607746 + (T)n Simple_repeat Simple_repeat 1 34 0 5 866 1096 78 0 0 chr5 36929515 36929657 -115607602 - B1_Mus1 SINE Alu 0 148 7 5 866 522 224 118 16 chr5 36929964 36930091 -115607168 - ID_B1 SINE B4 -3 221 82 5 866 511 177 78 17 chr5 36930110 36930224 -115607035 - B2_Mm2 SINE B2 0 195 75 5 866 480 306 23 88 chr5 36930224 36930375 -115606884 - RMER12 LTR ERVK 0 1322 1182 5 866 1247 115 33 0 chr5 36930375 36930558 -115606701 + B2_Mm2 SINE B2 3 191 -4 5 866 480 306 23 88 chr5 36930558 36930621 -115606638 - RMER12 LTR ERVK -141 1181 1122 5 866 3195 180 93 61 chr5 36930717 36931356 -115605903 - RMER12 LTR ERVK -85 1237 584 5 866 1518 59 5 0 chr5 36931356 36931542 -115605717 + B2_Mm1t SINE B2 2 188 -5 5 866 3195 180 93 61 chr5 36931542 36931694 -115605565 - RMER12 LTR ERVK -739 583 420 5 866 1342 52 0 34 chr5 36931682 36931697 -115605562 - B2_Mm1a SINE B2 -21 172 162 5 866 189 0 0 0 chr5 36931697 36931718 -115605541 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 5 866 1342 52 0 34 chr5 36931718 36931880 -115605379 - B2_Mm1a SINE B2 -32 161 1 5 866 1504 233 49 33 chr5 36931880 36932306 -115604953 - RMER12 LTR ERVK -889 433 1 5 866 534 138 0 0 chr5 36932306 36932386 -115604873 - B2_Mm2 SINE B2 -115 80 1 5 866 329 184 53 0 chr5 36932390 36932466 -115604793 + L1MA5 LINE L1 6113 6192 -108 5 866 201 108 0 0 chr5 36933548 36933585 -115603674 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 866 305 302 108 8 chr5 36933940 36934060 -115603199 + MIRb SINE MIR 6 137 -131 5 866 195 316 52 13 chr5 36934482 36934559 -115602700 - L2b LINE L2 -38 3337 3258 5 866 440 252 19 10 chr5 36934640 36934744 -115602515 - PB1D10 SINE Alu -8 109 5 5 866 1077 116 0 0 chr5 36935276 36935423 -115601836 + B1_Mur4 SINE Alu 4 150 0 5 866 267 29 0 0 chr5 36936225 36936245 -115601014 + (A)n Simple_repeat Simple_repeat 1 20 0 5 866 1098 29 81 0 chr5 36936245 36936381 -115600878 + B1_Mus2 SINE Alu 1 147 0 5 866 267 29 0 0 chr5 36936381 36936394 -115600865 + (A)n Simple_repeat Simple_repeat 1 13 0 5 866 338 148 19 0 chr5 36936560 36936614 -115600645 + RSINE1 SINE B4 4 58 -107 5 866 997 61 122 0 chr5 36937413 36937544 -115599715 - B1_Mus2 SINE Alu 0 147 1 5 866 575 133 0 30 chr5 36938406 36938538 -115598721 + CT-rich Low_complexity Low_complexity 1 128 0 6 866 895 117 0 27 chr5 36938539 36938724 -115598535 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 866 353 201 0 40 chr5 36938724 36938874 -115598385 + CT-rich Low_complexity Low_complexity 2 145 0 6 866 29 28 0 0 chr5 36938918 36938954 -115598305 + AT_rich Low_complexity Low_complexity 1 36 0 6 866 894 192 24 63 chr5 36938958 36939164 -115598095 - B3A SINE B2 0 198 1 6 866 523 257 116 35 chr5 36939290 36939488 -115597771 - ORR1D2 LTR MaLR -36 334 121 6 866 651 158 196 153 chr5 36939712 36939800 -115597459 + URR1A DNA MER1_type 1 126 -100 6 866 1337 73 45 0 chr5 36939800 36939979 -115597280 - B2_Mm2 SINE B2 -8 187 1 6 866 651 158 196 153 chr5 36939979 36940099 -115597160 + URR1A DNA MER1_type 127 218 -8 6 866 383 255 124 28 chr5 36942758 36942903 -115594356 - RSINE1 SINE B4 -5 160 2 6 866 183 42 0 0 chr5 36943169 36943193 -115594066 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 866 213 268 80 30 chr5 36947519 36947619 -115589640 - L2c LINE L2 -8 3379 3275 6 866 180 325 87 55 chr5 36948690 36948817 -115588442 - MIRb SINE MIR -8 260 130 6 866 567 94 52 0 chr5 36949891 36949987 -115587272 - URR1B DNA MER1_type 0 225 125 6 866 251 182 0 52 chr5 36951869 36951927 -115585332 - IAPEy-int LTR ERVK -5093 2420 2366 6 866 359 206 14 14 chr5 36952415 36952489 -115584770 + ID_B1 SINE B4 123 196 -28 6 866 203 292 0 0 chr5 36953290 36953338 -115583921 + L2c LINE L2 3263 3310 -77 6 866 504 165 0 0 chr5 36954394 36954485 -115582774 + GA-rich Low_complexity Low_complexity 2 92 0 6 866 189 0 0 0 chr5 36958626 36958647 -115578612 + (CTG)n Simple_repeat Simple_repeat 3 23 0 6 866 1211 42 7 0 chr5 36959368 36959512 -115577747 + B1_Mus2 SINE Alu 1 145 -2 6 866 262 302 117 37 chr5 36959657 36959828 -115577431 + MIRb SINE MIR 17 193 -69 6 866 378 0 0 0 chr5 36960510 36960552 -115576707 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 866 672 263 98 12 chr5 36960552 36960717 -115576542 - B3A SINE B2 -17 181 1 6 866 467 251 148 11 chr5 36960717 36960900 -115576359 - Charlie5 DNA MER1_type -34 2590 2382 6 867 723 109 244 0 chr5 36962572 36962691 -115574568 - B1_Mus1 SINE Alu 0 148 1 6 867 188 163 0 23 chr5 36962954 36962998 -115574261 + T-rich Low_complexity Low_complexity 4 46 0 6 867 206 200 0 39 chr5 36964212 36964264 -115572995 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 6 867 712 112 178 31 chr5 36965856 36965985 -115571274 - B1_Mus1 SINE Alu 0 148 1 6 867 183 300 17 0 chr5 36966061 36966121 -115571138 + MIRc SINE MIR 83 143 -125 6 867 368 284 8 17 chr5 36967295 36967413 -115569846 + PB1D10 SINE Alu 1 117 0 6 867 430 234 56 0 chr5 36967447 36967554 -115569705 - PB1D7 SINE Alu -7 113 1 6 867 528 224 0 36 chr5 36967745 36967856 -115569403 + PB1D9 SINE Alu 8 114 -6 6 867 549 0 0 0 chr5 36967856 36967917 -115569342 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 867 2116 99 43 37 chr5 36967970 36968295 -115568964 - ORR1A2 LTR MaLR 0 327 1 6 867 236 231 118 21 chr5 36969121 36969214 -115568045 + L2 LINE L2 2785 2886 -533 6 867 23 0 0 0 chr5 36969750 36969773 -115567486 + AT_rich Low_complexity Low_complexity 1 23 0 6 867 269 185 20 89 chr5 36970002 36970103 -115567156 + MTEa LTR MaLR 235 328 -51 6 867 3934 121 40 0 chr5 36970374 36970952 -115566307 - MT2B LTR ERVL 0 601 1 6 867 21 36 0 0 chr5 36971370 36971398 -115565861 + AT_rich Low_complexity Low_complexity 1 28 0 6 867 195 42 0 0 chr5 36971807 36971831 -115565428 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 867 531 41 0 27 chr5 36971831 36971895 -115565364 - B1_Mur4 SINE Alu -10 140 77 6 867 1254 176 9 0 chr5 37054052 37054262 -115482997 + B3 SINE B2 1 212 -4 1 867 436 298 77 10 chr5 37054447 37054654 -115482605 + L1M5 LINE L1 5572 5792 -332 2 867 469 214 32 71 chr5 37055552 37055678 -115481581 + PB1 SINE Alu 3 123 -4 3 867 445 223 71 9 chr5 37055782 37055895 -115481364 + PB1D7 SINE Alu 1 120 0 4 867 650 241 12 42 chr5 37055901 37056066 -115481193 + RSINE1 SINE B4 6 165 0 5 867 2018 127 6 28 chr5 37056180 37056505 -115480754 + ORR1A2 LTR MaLR 1 318 -9 6 867 276 279 67 0 chr5 37056572 37056676 -115480583 - L1MB7 LINE L1 -74 6110 6000 7 867 476 312 62 27 chr5 37056727 37056984 -115480275 - L1MB7 LINE L1 -284 5900 5635 7 867 764 286 182 74 chr5 37057292 37057529 -115479730 - L1MB7 LINE L1 -935 5211 4934 7 867 474 221 29 0 chr5 37057529 37057633 -115479626 - U6 snRNA snRNA 0 107 1 8 867 764 286 182 74 chr5 37057633 37057985 -115479274 - L1MB7 LINE L1 -1213 4933 4556 7 867 1319 51 90 0 chr5 37057985 37058162 -115479097 - B2_Mm2 SINE B2 0 195 3 9 867 764 286 182 74 chr5 37058162 37058329 -115478930 - L1MB7 LINE L1 -1591 4555 4372 7 867 327 309 25 0 chr5 37058378 37058459 -115478800 - ID4 SINE ID 0 83 1 1 867 251 235 73 0 chr5 37058515 37058583 -115478676 - L1MB7 LINE L1 -1917 4229 4157 7 867 255 289 195 19 chr5 37058590 37058749 -115478510 - Cheshire DNA MER1_type -299 2121 1935 1 867 310 277 159 7 chr5 37058763 37058901 -115478358 - Cheshire DNA MER1_type -705 1715 1557 1 867 34 93 0 0 chr5 37058975 37059072 -115478187 + AT_rich Low_complexity Low_complexity 1 97 0 1 867 278 244 155 163 chr5 37059407 37059634 -115477625 + ORR1E LTR MaLR 98 326 -33 1 867 282 56 0 0 chr5 37059634 37059670 -115477589 + (TATG)n Simple_repeat Simple_repeat 4 39 0 1 867 278 244 155 163 chr5 37059670 37059706 -115477553 + ORR1E LTR MaLR 327 359 0 1 867 2729 196 83 38 chr5 37059787 37059887 -115477372 - RLTR26 LTR ERVK 0 642 543 1 867 249 57 0 0 chr5 37059887 37059922 -115477337 + (CTG)n Simple_repeat Simple_repeat 3 37 0 1 867 2729 196 83 38 chr5 37059922 37060435 -115476824 - RLTR26 LTR ERVK -100 542 1 1 867 649 247 53 37 chr5 37061683 37061829 -115475430 + B3A SINE B2 6 152 -46 1 867 843 120 0 0 chr5 37061829 37061996 -115475263 + (TC)n Simple_repeat Simple_repeat 1 167 0 1 867 649 247 53 37 chr5 37061996 37062013 -115475246 + B3A SINE B2 153 169 -29 1 867 300 27 0 0 chr5 37062013 37062050 -115475209 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 867 649 246 99 84 chr5 37062050 37062095 -115475164 + B3A SINE B2 170 215 -1 1 867 923 250 20 10 chr5 37062103 37062305 -115474954 + ID_B1 SINE B4 10 213 -11 2 867 480 207 167 105 chr5 37062488 37062650 -115474609 + B3A SINE B2 20 191 -4 2 867 363 266 10 41 chr5 37062730 37062828 -115474431 + B4A SINE B4 7 101 -191 2 867 652 244 8 0 chr5 37063192 37063311 -115473948 + RSINE1 SINE B4 28 147 -18 2 867 229 286 63 0 chr5 37063366 37063421 -115473838 + MTE2b LTR MaLR 35 93 -286 2 867 1047 114 228 0 chr5 37063421 37063605 -115473654 + URR1A DNA MER1_type 1 226 0 2 867 1205 219 87 45 chr5 37063615 37063926 -115473333 + MTE2b LTR MaLR 56 379 0 2 867 197 65 0 31 chr5 37064540 37064572 -115472687 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2 867 864 133 20 20 chr5 37064572 37064718 -115472541 - B1_Mur4 SINE Alu -3 147 2 2 867 739 184 81 0 chr5 37065046 37065182 -115472077 + B1_Mus1 SINE Alu 2 148 0 2 867 752 202 0 15 chr5 37066121 37066252 -115471007 + RLTR18B LTR ERVK 1 129 -383 2 867 991 130 25 0 chr5 37066278 37066440 -115470819 - URR1A DNA MER1_type 0 226 61 3 867 1585 236 68 5 chr5 37066524 37066891 -115470368 + RLTR18B LTR ERVK 123 512 0 2 867 254 244 25 13 chr5 37066978 37067057 -115470202 + L1MEc LINE L1 607 686 -5716 3 867 627 217 83 6 chr5 37067176 37067357 -115469902 + L1MEc LINE L1 664 858 -5544 3 867 297 316 127 31 chr5 37067405 37067525 -115469734 + L1MEc LINE L1 1418 1558 -4859 3 867 1639 37 0 0 chr5 37067525 37067714 -115469545 + B2_Mm1a SINE B2 1 189 -4 3 867 512 298 119 19 chr5 37067714 37067978 -115469281 + L1MEc LINE L1 1459 1839 -4578 3 867 1377 91 27 0 chr5 37067994 37068180 -115469079 + B2_Mm2 SINE B2 2 192 -3 3 867 763 152 0 0 chr5 37068275 37068393 -115468866 - B1_Mm SINE Alu -21 126 9 3 867 662 209 107 7 chr5 37068410 37068559 -115468700 + RSINE1 SINE B4 2 165 0 3 867 420 71 0 0 chr5 37068790 37068846 -115468413 + (TATG)n Simple_repeat Simple_repeat 1 56 0 3 867 243 188 0 0 chr5 37068864 37068912 -115468347 + GA-rich Low_complexity Low_complexity 1 48 0 3 867 776 282 62 89 chr5 37069101 37069294 -115467965 - B4 SINE B4 -3 289 91 3 867 853 233 48 19 chr5 37069294 37069504 -115467755 - B3 SINE B2 0 216 1 3 867 776 282 62 89 chr5 37069504 37069602 -115467657 - B4 SINE B4 -202 90 6 3 867 277 286 113 9 chr5 37069947 37070053 -115467206 + PB1D10 SINE Alu 1 117 0 4 867 269 296 113 61 chr5 37070057 37070172 -115467087 - MER3 DNA MER1_type -82 127 7 4 867 411 329 92 77 chr5 37070411 37070731 -115466528 - MLT1I LTR MaLR -4 407 83 4 867 1183 135 57 0 chr5 37070731 37070924 -115466335 + URR1A DNA MER1_type 1 204 -22 4 867 811 196 32 19 chr5 37071881 37072037 -115465222 + RSINE1 SINE B4 8 165 0 4 867 931 237 108 0 chr5 37072925 37073174 -115464085 + Lx8 LINE L1 6837 7112 -361 4 867 590 254 35 21 chr5 37073378 37073523 -115463736 - B1_Mur2 SINE Alu -1 148 2 4 867 549 156 0 0 chr5 37073555 37073651 -115463608 + GA-rich Low_complexity Low_complexity 2 97 0 4 867 197 0 71 0 chr5 37073658 37073686 -115463573 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 4 867 302 312 35 71 chr5 37074104 37074273 -115462986 + RSINE1 SINE B4 3 165 0 4 867 1230 54 0 0 chr5 37074323 37074470 -115462789 - B1_Mus1 SINE Alu 0 148 2 5 867 31 44 0 0 chr5 37074475 37074520 -115462739 + AT_rich Low_complexity Low_complexity 1 45 0 5 867 22 35 0 0 chr5 37074557 37074586 -115462673 + AT_rich Low_complexity Low_complexity 1 29 0 5 867 782 160 17 0 chr5 37074627 37074746 -115462513 + B1_Mur2 SINE Alu 19 139 -10 5 867 251 91 23 0 chr5 37075428 37075472 -115461787 + B3 SINE B2 172 216 0 5 867 391 204 15 212 chr5 37075485 37075524 -115461735 + B3A SINE B2 2 31 -167 5 867 1490 38 22 11 chr5 37075524 37075709 -115461550 + B2_Mm2 SINE B2 2 188 -7 5 867 391 222 33 205 chr5 37075709 37075896 -115461363 + B3A SINE B2 32 195 0 5 867 369 0 0 0 chr5 37076463 37076504 -115460755 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 867 1463 82 0 5 chr5 37077281 37077477 -115459782 + B2_Mm2 SINE B2 1 195 0 5 867 327 284 46 72 chr5 37077605 37077757 -115459502 + B4A SINE B4 72 219 -73 5 867 843 167 0 22 chr5 37077621 37077764 -115459495 + B1_Mur3 SINE Alu 9 141 -8 6 867 559 315 88 53 chr5 37077793 37078135 -115459124 + ORR1E LTR MaLR 6 359 0 6 867 248 308 104 25 chr5 37078137 37078300 -115458959 + ORR1E-int LTR MaLR 1 176 -1404 6 867 748 234 32 5 chr5 37078321 37078510 -115458749 + B3A SINE B2 4 197 -1 6 867 703 100 16 62 chr5 37078680 37078808 -115458451 + B1_Mur4 SINE Alu 29 150 0 6 867 2189 84 62 0 chr5 37078896 37079204 -115458055 - ORR1A2 LTR MaLR 0 327 1 6 867 1619 294 119 51 chr5 37079239 37079847 -115457412 + ORR1E-int LTR MaLR 712 1366 -214 6 867 1386 207 129 3 chr5 37079847 37080181 -115457078 - MTEa LTR MaLR -3 376 1 6 867 1619 294 119 51 chr5 37080181 37080243 -115457016 + ORR1E-int LTR MaLR 1367 1428 -152 6 867 848 189 43 21 chr5 37080245 37080478 -115456781 - Lx9 LINE L1 -2 7642 7405 6 867 383 291 102 0 chr5 37080478 37080605 -115456654 + ORR1E-int LTR MaLR 1407 1546 -34 6 867 304 291 238 44 chr5 37080592 37080886 -115456373 + ORR1E LTR MaLR 7 357 -2 6 867 709 259 38 119 chr5 37081240 37081450 -115455809 + B3A SINE B2 1 193 -2 6 867 226 284 97 54 chr5 37081593 37081686 -115455573 + ORR1E LTR MaLR 1 97 -262 6 867 1810 281 243 68 chr5 37081845 37081955 -115455304 + MTE-int LTR MaLR 1 113 -1467 7 867 1259 54 0 0 chr5 37081955 37082103 -115455156 + B1_Mus1 SINE Alu 1 148 0 7 867 1810 281 243 68 chr5 37082103 37083252 -115454007 + MTE-int LTR MaLR 114 1480 -100 7 867 599 304 160 49 chr5 37083285 37083572 -115453687 + ORR1E LTR MaLR 11 329 -41 7 867 328 253 0 24 chr5 37083801 37083886 -115453373 + ID4_ SINE ID 1 83 0 7 867 607 274 72 29 chr5 37083952 37084148 -115453111 + B3A SINE B2 15 213 -3 7 867 358 246 16 36 chr5 37084168 37084261 -115452998 + RSINE1 SINE B4 1 88 -204 7 867 212 284 146 9 chr5 37084284 37084394 -115452865 - MIRc SINE MIR -118 150 26 7 867 272 237 45 58 chr5 37084982 37085105 -115452154 - MIRb SINE MIR -93 183 62 7 867 610 185 0 3 chr5 37085515 37085632 -115451627 + B4A SINE B4 104 218 -74 7 867 389 252 10 10 chr5 37085621 37085721 -115451538 + PB1D9 SINE Alu 18 117 -3 7 867 931 167 201 0 chr5 37085726 37085900 -115451359 + B3 SINE B2 2 210 -6 7 867 248 333 140 78 chr5 37085900 37085973 -115451286 + B4A SINE B4 230 292 0 8 867 23 78 0 0 chr5 37087188 37087239 -115450020 + GC_rich Low_complexity Low_complexity 1 51 0 8 867 578 221 57 35 chr5 37088804 37088945 -115448314 - RSINE1 SINE B4 -19 146 3 8 867 374 203 0 0 chr5 37088985 37089054 -115448205 - B4A SINE B4 -73 219 151 8 867 213 65 0 0 chr5 37089060 37089091 -115448168 + (G)n Simple_repeat Simple_repeat 1 31 0 8 867 237 170 42 21 chr5 37089091 37089139 -115448120 - B4A SINE B4 -144 148 100 8 867 524 190 68 149 chr5 37089146 37089307 -115447952 + B1_Mur2 SINE Alu 2 149 0 8 867 262 280 163 51 chr5 37089331 37089429 -115447830 - B4A SINE B4 -183 109 1 8 867 221 308 82 15 chr5 37089672 37089807 -115447452 + L2a LINE L2 3026 3169 -257 8 867 435 52 0 0 chr5 37090228 37090286 -115446973 + (TC)n Simple_repeat Simple_repeat 2 59 0 8 867 240 35 0 0 chr5 37090302 37090331 -115446928 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 867 345 24 0 0 chr5 37090331 37090372 -115446887 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 867 189 0 0 0 chr5 37090450 37090471 -115446788 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 9 867 207 216 0 0 chr5 37090667 37090704 -115446555 + MIR SINE MIR 115 151 -57 9 867 221 276 72 54 chr5 37090783 37090894 -115446365 + MIR SINE MIR 126 238 -24 9 867 303 274 49 49 chr5 37091416 37091539 -115445720 - MLT1C LTR MaLR -337 130 8 9 867 272 292 100 50 chr5 37091554 37091734 -115445525 - MIRb SINE MIR -57 211 23 9 867 264 191 127 42 chr5 37091986 37092057 -115445202 + B4 SINE B4 1 77 -215 9 867 869 251 23 1 chr5 37093049 37093249 -115444010 + B3A SINE B2 1 203 -13 9 108 930 194 0 0 chr5 37093249 37093501 -115443758 + (TATG)n Simple_repeat Simple_repeat 1 252 0 9 868 363 192 53 124 chr5 37093727 37093840 -115443419 + PB1D10 SINE Alu 27 144 -5 9 868 551 244 9 9 chr5 37093849 37093965 -115443294 + PB1D7 SINE Alu 3 118 -2 9 868 500 197 70 106 chr5 37094010 37094152 -115443107 + B1F SINE Alu 13 149 0 1 868 22 0 0 0 chr5 37094152 37094174 -115443085 + AT_rich Low_complexity Low_complexity 1 22 0 1 868 279 247 130 0 chr5 37094204 37094281 -115442978 + ID_B1 SINE B4 10 96 -128 1 868 336 235 86 0 chr5 37094294 37094375 -115442884 + ID_B1 SINE B4 134 221 -3 1 868 203 210 53 5 chr5 37095601 37095661 -115441598 - MIRc SINE MIR -162 106 44 1 868 572 305 7 0 chr5 37096418 37096569 -115440690 + RSINE1 SINE B4 14 165 0 1 868 222 320 40 103 chr5 37097155 37097329 -115439930 - MIRm SINE MIR -68 208 46 1 868 351 0 0 0 chr5 37097625 37097664 -115439595 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 868 1188 177 213 29 chr5 37097666 37097980 -115439279 - ORR1D1 LTR MaLR -2 372 1 1 868 534 43 0 0 chr5 37104888 37104957 -115432302 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 868 898 250 91 16 chr5 37105000 37105252 -115432007 - B4A SINE B4 -21 271 1 1 868 347 293 30 75 chr5 37105611 37105744 -115431515 - MIRc SINE MIR -119 149 23 1 868 257 211 0 34 chr5 37106198 37106257 -115431002 - MIR SINE MIR -65 143 87 1 868 296 333 9 0 chr5 37106253 37106358 -115430901 + MIR SINE MIR 38 143 -119 1 868 585 252 7 29 chr5 37107220 37107359 -115429900 + B1F1 SINE Alu 1 136 -13 1 868 400 138 69 0 chr5 37107477 37107564 -115429695 - Lx9 LINE L1 -1 7643 7551 1 868 1394 105 73 42 chr5 37107601 37107860 -115429399 - L1_Mus4 LINE L1 -4 6632 6366 1 868 500 266 198 22 chr5 37108617 37108890 -115428369 + MLT2C2 LTR ERVL 14 498 -65 1 868 716 264 134 0 chr5 37109237 37109434 -115427825 + B4A SINE B4 5 224 -68 1 868 324 0 0 0 chr5 37109434 37109470 -115427789 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 868 716 264 134 0 chr5 37109470 37109488 -115427771 + B4A SINE B4 225 248 -44 1 868 203 171 0 0 chr5 37109488 37109529 -115427730 + GA-rich Low_complexity Low_complexity 2 42 0 1 868 238 298 0 0 chr5 37109826 37109904 -115427355 + CT-rich Low_complexity Low_complexity 1 78 0 1 868 265 143 30 81 chr5 37109925 37109972 -115427287 + A-rich Low_complexity Low_complexity 2 48 0 1 868 373 267 115 16 chr5 37109972 37110155 -115427104 + B3 SINE B2 1 201 -15 1 868 265 143 30 81 chr5 37110155 37110206 -115427053 + A-rich Low_complexity Low_complexity 49 95 0 1 868 351 289 56 34 chr5 37110210 37110389 -115426870 - L1ME3 LINE L1 -64 6098 5916 1 868 414 310 35 7 chr5 37111059 37111202 -115426057 - MLT1A0 LTR MaLR -69 296 150 1 868 270 0 0 0 chr5 37111202 37111232 -115426027 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1 868 487 265 19 19 chr5 37111252 37111356 -115425903 - ID_B1 SINE B4 -41 183 80 1 868 25 0 0 0 chr5 37111356 37111381 -115425878 + AT_rich Low_complexity Low_complexity 1 25 0 1 868 195 42 0 0 chr5 37111388 37111412 -115425847 + (TGGG)n Simple_repeat Simple_repeat 1 24 0 1 868 662 267 0 0 chr5 37111423 37111554 -115425705 - RSINE1 SINE B4 -33 132 2 1 868 454 241 11 0 chr5 37111554 37111639 -115425620 - ID_B1 SINE B4 -133 91 6 1 868 300 228 0 0 chr5 37111972 37112029 -115425230 + ID4_ SINE ID 18 74 -9 1 868 827 95 8 0 chr5 37112086 37112212 -115425047 + MTB LTR MaLR 274 400 0 1 868 1010 117 0 7 chr5 37113111 37113257 -115424002 + B1_Mus1 SINE Alu 2 146 -2 1 868 192 83 62 0 chr5 37113268 37113316 -115423943 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 868 333 0 0 0 chr5 37114162 37114199 -115423060 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 868 567 174 9 18 chr5 37114199 37114310 -115422949 - PB1D9 SINE Alu -10 110 1 1 868 2685 152 100 17 chr5 37114749 37115289 -115421970 + RMER4B LTR ERVK 1 585 0 1 868 268 245 0 0 chr5 37115879 37115932 -115421327 + B1F2 SINE Alu 1 53 -96 1 868 3691 61 0 10 chr5 37115932 37116398 -115420861 + L1_Mus1 LINE L1 6092 6557 -10 1 868 1248 106 21 0 chr5 37116398 37116586 -115420673 + B2_Mm2 SINE B2 1 192 -3 1 868 3691 61 0 10 chr5 37116586 37116635 -115420624 + L1_Mus1 LINE L1 6558 6567 0 1 868 212 295 33 0 chr5 37116699 37116760 -115420499 + PB1D7 SINE Alu 40 102 -18 1 868 352 266 26 34 chr5 37116771 37116888 -115420371 - L1MB5 LINE L1 0 6174 6059 1 868 639 0 0 0 chr5 37116916 37116987 -115420272 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 1 868 486 49 0 0 chr5 37117014 37117075 -115420184 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 868 289 286 0 45 chr5 37117075 37117152 -115420107 - BC1_Mm scRNA scRNA -61 91 16 1 868 252 172 11 54 chr5 37118122 37118214 -115419045 + (TTTG)n Simple_repeat Simple_repeat 2 89 0 1 868 387 0 0 0 chr5 37118214 37118257 -115419002 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 868 620 214 60 15 chr5 37118279 37118412 -115418847 - B1F2 SINE Alu -1 148 10 1 868 202 326 33 0 chr5 37119254 37119346 -115417913 + MIRm SINE MIR 46 140 -136 1 868 289 333 47 7 chr5 37119658 37119806 -115417453 - RMER15 LTR ERVL -17 558 405 1 868 191 325 142 0 chr5 37120884 37121004 -115416255 + MIR3 SINE MIR 4 140 -68 1 868 270 0 0 0 chr5 37121610 37121640 -115415619 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 868 392 0 0 20 chr5 37121816 37121865 -115415394 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 868 1057 110 17 17 chr5 37123424 37123600 -115413659 - B2_Mm2 SINE B2 -19 176 1 1 868 329 296 61 53 chr5 37124021 37124065 -115413194 + B4 SINE B4 42 86 -206 1 868 469 257 124 0 chr5 37124065 37124178 -115413081 + B1_Mm SINE Alu 1 127 -20 1 868 456 19 0 0 chr5 37124180 37124233 -115413026 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 868 1509 48 0 0 chr5 37124323 37124512 -115412747 + B2_Mm1t SINE B2 1 189 -4 1 868 221 178 22 0 chr5 37124545 37124590 -115412669 + A-rich Low_complexity Low_complexity 5 50 0 1 868 246 211 19 0 chr5 37124994 37125046 -115412213 + B4A SINE B4 3 55 -237 1 868 500 282 160 0 chr5 37125047 37125203 -115412056 - B3A SINE B2 -17 181 1 1 868 466 134 27 0 chr5 37125224 37125336 -115411923 + (TCTA)n Simple_repeat Simple_repeat 4 118 0 1 868 209 346 12 0 chr5 37125337 37125418 -115411841 + (TCCA)n Simple_repeat Simple_repeat 1 82 0 1 868 303 71 0 0 chr5 37125441 37125483 -115411776 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 1 868 274 65 379 63 chr5 37125552 37125659 -115411600 - B2_Mm2 SINE B2 -8 187 47 1 868 1016 141 0 0 chr5 37125699 37125855 -115411404 - B2_Mm2 SINE B2 -37 158 3 1 868 243 0 0 0 chr5 37125871 37125898 -115411361 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 868 692 137 16 0 chr5 37125980 37126104 -115411155 + CT-rich Low_complexity Low_complexity 4 129 0 1 868 514 143 19 0 chr5 37126714 37126819 -115410440 + (TCCA)n Simple_repeat Simple_repeat 1 107 0 1 868 757 148 104 0 chr5 37128309 37128444 -115408815 + B1_Mur4 SINE Alu 1 149 -1 1 868 249 250 29 0 chr5 37128808 37128876 -115408383 + ID4 SINE ID 5 74 -9 1 868 236 295 16 0 chr5 37131178 37131239 -115406020 - MIR SINE MIR -59 149 88 1 868 2407 152 32 9 chr5 37131567 37131998 -115405261 - BGLII_B LTR ERVK 0 441 1 1 868 207 269 0 0 chr5 37132137 37132189 -115405070 + CT-rich Low_complexity Low_complexity 2 53 0 1 868 375 252 106 18 chr5 37132427 37132540 -115404719 + ID_B1 SINE B4 98 220 -4 1 868 233 178 22 0 chr5 37132540 37132559 -115404700 + polypurine Low_complexity Low_complexity 1 19 0 1 868 1100 86 6 17 chr5 37132559 37132737 -115404522 + (GGA)n Simple_repeat Simple_repeat 3 178 0 1 868 233 178 22 0 chr5 37132737 37132762 -115404497 + polypurine Low_complexity Low_complexity 20 45 0 1 868 517 207 159 16 chr5 37133012 37133194 -115404065 + Ricksha_c DNA MuDR 699 906 -1142 1 868 201 328 129 14 chr5 37133438 37133577 -115403682 - L2a LINE L2 -1 3425 3271 1 868 694 305 71 48 chr5 37134830 37135099 -115402160 - B4 SINE B4 -15 277 3 1 868 243 0 0 0 chr5 37135507 37135534 -115401725 + (A)n Simple_repeat Simple_repeat 1 27 0 1 868 434 241 78 7 chr5 37135841 37135983 -115401276 - B4A SINE B4 -139 153 2 1 868 240 341 11 0 chr5 37136013 37136101 -115401158 + MER58A DNA MER1_type 64 152 -72 1 868 645 161 269 18 chr5 37136463 37136634 -115400625 - B3 SINE B2 -2 214 1 1 868 788 109 15 38 chr5 37137352 37137485 -115399774 - B1_Mus2 SINE Alu 0 147 18 1 868 402 114 41 102 chr5 37137401 37137499 -115399760 - MT2B LTR ERVL -343 258 167 1 868 223 311 0 26 chr5 37137541 37137570 -115399689 - B3A SINE B2 -119 79 53 1 868 674 177 85 0 chr5 37137570 37137700 -115399559 + B1_Mus1 SINE Alu 1 141 -7 1 868 231 184 0 5 chr5 37137700 37137746 -115399513 - B3 SINE B2 -146 52 6 1 868 267 148 0 18 chr5 37137770 37137825 -115399434 - B1F SINE Alu 0 149 96 1 868 21 0 0 0 chr5 37137848 37137869 -115399390 + AT_rich Low_complexity Low_complexity 1 21 0 1 868 740 152 0 0 chr5 37138045 37138163 -115399096 - B1_Mus2 SINE Alu -29 118 1 1 868 472 275 36 0 chr5 37138173 37138311 -115398948 - B1F1 SINE Alu -6 143 1 1 868 229 196 0 19 chr5 37139680 37139732 -115397527 + (CGCGG)n Simple_repeat Simple_repeat 2 52 0 1 868 210 122 49 0 chr5 37140107 37140148 -115397111 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 1 868 286 232 78 89 chr5 37140149 37140239 -115397020 + MT2B LTR ERVL 152 240 -361 1 868 525 244 79 0 chr5 37140166 37140293 -115396966 + B1_Mur1 SINE Alu 12 148 -1 1 868 321 324 67 39 chr5 37141099 37141279 -115395980 + MLT1F-int LTR MaLR 656 840 -649 1 868 22 35 0 0 chr5 37141644 37141673 -115395586 + AT_rich Low_complexity Low_complexity 1 29 0 1 868 544 160 0 39 chr5 37141728 37141832 -115395427 + B2_Mm2 SINE B2 53 152 -43 2 868 216 0 0 0 chr5 37141832 37141856 -115395403 + (T)n Simple_repeat Simple_repeat 1 24 0 2 868 441 146 398 0 chr5 37142604 37142707 -115394552 + B1_Mus1 SINE Alu 3 146 -2 2 868 724 269 163 106 chr5 37143756 37144247 -115393012 - RMER4B LTR ERVK -7 578 60 2 868 949 183 37 69 chr5 37144444 37144661 -115392598 + ORR1D1 LTR MaLR 143 352 -22 2 868 1639 173 104 6 chr5 37144661 37144998 -115392261 - RLTR14 LTR ERV1 0 382 13 2 868 409 211 11 11 chr5 37145032 37145123 -115392136 + B4A SINE B4 202 292 0 2 868 264 125 359 10 chr5 37145211 37145314 -115391945 - B2_Mm2 SINE B2 -10 185 47 2 868 1135 78 66 0 chr5 37145380 37145547 -115391712 - B2_Mm1t SINE B2 -14 179 2 2 868 651 255 101 15 chr5 37145579 37145778 -115391481 + B3 SINE B2 1 216 0 2 868 637 242 112 53 chr5 37145796 37145945 -115391314 - B3 SINE B2 -17 199 36 2 868 1558 47 0 0 chr5 37145945 37146138 -115391121 + B2_Mm1a SINE B2 1 193 0 2 868 637 242 112 53 chr5 37146138 37146176 -115391083 - B3 SINE B2 -181 35 1 2 868 1102 101 18 0 chr5 37146408 37146563 -115390696 + B2_Mm1a SINE B2 1 156 -37 2 868 183 42 0 0 chr5 37146563 37146587 -115390672 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 2 868 1102 101 18 0 chr5 37146587 37146600 -115390659 + B2_Mm1a SINE B2 157 171 -22 2 868 377 39 0 19 chr5 37146608 37146660 -115390599 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 868 738 226 0 0 chr5 37146667 37146813 -115390446 - B3A SINE B2 -51 147 2 2 868 1170 85 0 0 chr5 37146820 37146997 -115390262 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 2 868 3592 120 20 7 chr5 37147002 37147563 -115389696 - Lx4A LINE L1 -2 7056 6489 2 868 2380 112 0 6 chr5 37147565 37147907 -115389352 + Lx4A LINE L1 6156 6495 -563 2 868 252 0 0 0 chr5 37148385 37148413 -115388846 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2 868 813 157 12 25 chr5 37148413 37148576 -115388683 - B2_Mm2 SINE B2 -34 161 1 2 868 1322 73 17 0 chr5 37148629 37148806 -115388453 + B2_Mm2 SINE B2 2 181 -14 2 868 360 0 0 0 chr5 37148959 37148999 -115388260 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 868 1249 96 6 0 chr5 37149109 37149287 -115387972 - B2_Mm1a SINE B2 -14 179 1 2 868 26 30 0 0 chr5 37149296 37149329 -115387930 + AT_rich Low_complexity Low_complexity 1 33 0 2 868 334 100 16 16 chr5 37149329 37149390 -115387869 + (TATG)n Simple_repeat Simple_repeat 2 62 0 2 868 435 216 11 0 chr5 37149413 37149501 -115387758 - RSINE1 SINE B4 -35 130 42 2 868 223 295 100 25 chr5 37149511 37149591 -115387668 - B4 SINE B4 -124 168 83 2 868 635 184 80 0 chr5 37149893 37150018 -115387241 + B1_Mur2 SINE Alu 10 144 -5 2 868 258 274 30 120 chr5 37150068 37150201 -115387058 + MER82 DNA MER2_type 353 473 -180 2 868 1363 249 12 83 chr5 37150285 37150528 -115386731 + MTE2a LTR MaLR 2 213 -166 2 868 2099 98 132 11 chr5 37150528 37150898 -115386361 - RLTR9F LTR ERVK 0 415 1 2 868 1363 249 12 83 chr5 37150898 37151061 -115386198 + MTE2a LTR MaLR 214 379 0 2 868 488 282 271 11 chr5 37151550 37151923 -115385336 + L1MC4 LINE L1 6552 7021 -1021 2 868 1273 114 45 9 chr5 37151923 37152145 -115385114 - ORR1A4 LTR MaLR 0 329 100 2 868 660 275 52 0 chr5 37152145 37152356 -115384903 + ID_B1 SINE B4 1 222 -2 2 868 261 234 0 0 chr5 37152356 37152420 -115384839 + GA-rich Low_complexity Low_complexity 1 64 0 2 868 732 12 0 0 chr5 37152902 37152987 -115384272 + (CTCTG)n Simple_repeat Simple_repeat 1 85 0 2 868 486 0 0 0 chr5 37153313 37153367 -115383892 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 868 351 0 0 0 chr5 37153367 37153405 -115383854 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 868 304 246 139 33 chr5 37154205 37154327 -115382932 - B4A SINE B4 -157 135 1 2 868 489 319 81 6 chr5 37154847 37154923 -115382336 + B4 SINE B4 1 88 -204 2 868 219 433 39 0 chr5 37154923 37155027 -115382232 + B1F2 SINE Alu 1 108 -41 2 868 1285 271 128 30 chr5 37155092 37155686 -115381573 + Lx8 LINE L1 6821 7472 -1 2 868 375 116 0 0 chr5 37155700 37155725 -115381534 + (A)n Simple_repeat Simple_repeat 1 25 0 2 868 1142 61 0 0 chr5 37155725 37155872 -115381387 + B1_Mm SINE Alu 1 147 0 2 868 375 116 0 0 chr5 37155872 37155915 -115381344 + (A)n Simple_repeat Simple_repeat 1 43 0 2 868 258 297 0 63 chr5 37155917 37155996 -115381263 + B4 SINE B4 215 288 -4 2 868 4306 86 15 3 chr5 37156440 37157058 -115380201 - L1_Mus4 LINE L1 0 6636 6012 2 868 234 0 0 0 chr5 37157680 37157706 -115379553 + (C)n Simple_repeat Simple_repeat 1 26 0 2 868 450 0 0 0 chr5 37159279 37159329 -115377930 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 868 468 0 0 0 chr5 37159329 37159380 -115377879 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 868 400 158 9 9 chr5 37159557 37159672 -115377587 + (CA)n Simple_repeat Simple_repeat 1 115 0 2 868 387 0 0 0 chr5 37159672 37159715 -115377544 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 868 617 66 0 11 chr5 37159720 37159812 -115377447 + (CA)n Simple_repeat Simple_repeat 1 91 0 2 868 1855 212 69 2 chr5 37160059 37160452 -115376807 + MTD LTR MaLR 1 419 0 2 868 570 314 22 49 chr5 37161076 37161300 -115375959 + B4A SINE B4 1 218 -74 2 868 928 225 34 0 chr5 37161842 37162051 -115375208 - B3 SINE B2 0 216 1 2 868 406 266 86 0 chr5 37162084 37162212 -115375047 + ORR1E LTR MaLR 51 189 -170 2 868 660 111 0 0 chr5 37162294 37162393 -115374866 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 2 868 1095 139 0 0 chr5 37162394 37162574 -115374685 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 868 270 0 0 0 chr5 37162574 37162604 -115374655 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 868 1348 95 16 0 chr5 37162604 37162794 -115374465 - B2_Mm2 SINE B2 -1 194 2 2 868 30 0 0 0 chr5 37162819 37162849 -115374410 + AT_rich Low_complexity Low_complexity 1 30 0 2 868 1359 313 104 24 chr5 37162905 37163482 -115373777 + MTE-int LTR MaLR 1 623 -957 2 868 284 221 36 55 chr5 37163497 37163607 -115373652 + C-rich Low_complexity Low_complexity 4 111 0 2 868 325 86 35 58 chr5 37163610 37163696 -115373563 + (CACCC)n Simple_repeat Simple_repeat 3 86 0 2 868 1518 202 58 22 chr5 37163734 37164094 -115373165 - ORR1D1 LTR MaLR -1 373 1 2 868 298 227 61 92 chr5 37164421 37164552 -115372707 + B1_Mur2 SINE Alu 1 127 -22 2 868 636 181 61 49 chr5 37164443 37164464 -115372795 + ID_B1 SINE B4 60 211 -13 2 868 1039 43 0 28 chr5 37164464 37164590 -115372669 + B1_Mus1 SINE Alu 10 135 -13 2 868 288 0 0 0 chr5 37164590 37164622 -115372637 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 868 636 181 61 49 chr5 37164622 37164637 -115372622 + ID_B1 SINE B4 212 224 0 2 868 790 131 0 144 chr5 37164818 37164978 -115372281 + B1_Mus1 SINE Alu 1 137 -11 2 868 219 103 0 0 chr5 37164978 37165017 -115372242 + (CTAA)n Simple_repeat Simple_repeat 3 41 0 2 868 1216 34 0 0 chr5 37165670 37165816 -115371443 - B1_Mus1 SINE Alu -1 147 2 2 868 313 239 0 83 chr5 37166021 37166117 -115371142 - ID_B1 SINE B4 -3 221 134 2 868 259 270 48 48 chr5 37166023 37166128 -115371131 - B1F SINE Alu -5 144 40 2 868 537 30 0 0 chr5 37166431 37166498 -115370761 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2 868 1339 7 0 0 chr5 37167099 37167245 -115370014 + B1_Mm SINE Alu 2 147 0 2 868 333 221 32 75 chr5 37168013 37168106 -115369153 + RSINE1 SINE B4 75 163 -2 2 868 341 77 0 19 chr5 37168158 37168211 -115369048 - HAL1-3A_ME LINE L1 -831 2027 1976 2 868 660 184 0 0 chr5 37168225 37168377 -115368882 + (TG)n Simple_repeat Simple_repeat 2 153 0 2 868 215 256 12 35 chr5 37168686 37168771 -115368488 + CT-rich Low_complexity Low_complexity 2 84 0 2 868 353 260 0 0 chr5 37169037 37169114 -115368145 + B4A SINE B4 158 234 -58 2 868 710 299 68 45 chr5 37169114 37169380 -115367879 + B4A SINE B4 5 276 -16 2 868 460 77 21 32 chr5 37169403 37169497 -115367762 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 868 1110 220 120 25 chr5 37169498 37169749 -115367510 + RMER10A LTR ERVL 1 273 -169 2 868 1104 91 17 6 chr5 37169749 37169925 -115367334 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 2 868 1200 67 0 27 chr5 37169931 37170114 -115367145 + (TCCCC)n Simple_repeat Simple_repeat 3 180 0 2 868 207 0 0 0 chr5 37170114 37170137 -115367122 + (TCTCC)n Simple_repeat Simple_repeat 3 25 0 2 868 1110 220 120 25 chr5 37170137 37170236 -115367023 + RMER10A LTR ERVL 283 391 -51 2 868 277 275 63 42 chr5 37170360 37170455 -115366804 - RSINE1 SINE B4 -67 98 2 2 868 923 32 24 0 chr5 37170478 37170602 -115366657 - B1_Mus2 SINE Alu 0 147 21 2 868 394 183 0 114 chr5 37170510 37170615 -115366644 - MT2B LTR ERVL -337 264 172 2 868 512 173 0 53 chr5 37170636 37170825 -115366434 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 868 301 186 7 52 chr5 37170849 37170985 -115366274 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 868 397 181 8 52 chr5 37171041 37171423 -115365836 + (TG)n Simple_repeat Simple_repeat 1 365 0 2 868 814 248 50 0 chr5 37171453 37171655 -115365604 - B3 SINE B2 0 216 5 2 868 1956 167 62 38 chr5 37171663 37172086 -115365173 - RMER4A LTR ERVK 0 466 34 2 868 575 217 0 42 chr5 37172078 37172090 -115365169 - B4 SINE B4 -70 222 213 2 868 306 0 0 0 chr5 37172090 37172124 -115365135 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 868 575 217 0 42 chr5 37172124 37172231 -115365028 - B4 SINE B4 -80 212 108 2 868 2882 12 3 0 chr5 37172276 37172597 -115364662 + RLTRETN_Mm LTR ERVK 1 322 0 2 868 13841 26 1 2 chr5 37172597 37174295 -115362964 + MMETn-int LTR ERVK 1 1695 -3149 2 868 4051 52 0 4 chr5 37174296 37174802 -115362457 + MMETn-int LTR ERVK 3919 4422 -422 2 868 539 0 0 0 chr5 37174802 37174866 -115362393 + RLTRETN_Mm LTR ERVK 259 322 0 2 868 324 0 0 0 chr5 37175151 37175187 -115362072 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 868 956 103 84 0 chr5 37175545 37175700 -115361559 + Lx2 LINE L1 6830 6997 0 2 868 1324 201 66 16 chr5 37175751 37175999 -115361260 + RMER5 LTR ERV1 31 281 -253 2 868 4024 58 0 75 chr5 37175999 37176560 -115360699 - MURVY-LTR LTR ERV1 0 519 1 3 868 1324 201 66 16 chr5 37176560 37176615 -115360644 + RMER5 LTR ERV1 282 348 -186 2 868 1503 49 0 11 chr5 37176629 37176816 -115360443 - B2_Mm2 SINE B2 -8 187 3 3 868 831 192 18 110 chr5 37176987 37177215 -115360044 - B3 SINE B2 -9 207 1 3 868 1193 68 0 0 chr5 37177907 37178043 -115359216 + B1_Mus2 SINE Alu 1 136 -11 3 868 279 0 0 0 chr5 37178043 37178074 -115359185 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 868 312 238 185 28 chr5 37178576 37178684 -115358575 - MLT1B LTR MaLR -20 370 246 3 868 1086 84 21 0 chr5 37178794 37178937 -115358322 - B1_Mm SINE Alu 0 147 2 3 868 519 329 67 20 chr5 37179724 37179978 -115357281 - B4 SINE B4 -2 290 25 3 868 195 42 0 0 chr5 37179985 37180009 -115357250 + (TC)n Simple_repeat Simple_repeat 2 25 0 3 868 760 216 168 31 chr5 37180009 37180200 -115357059 - ID_B1 SINE B4 -5 219 3 3 868 585 219 12 16 chr5 37180345 37180491 -115356768 + B1_Mur1 SINE Alu 1 149 0 3 868 600 255 57 47 chr5 37180514 37180707 -115356552 + B3A SINE B2 3 197 -1 3 868 347 309 216 35 chr5 37180749 37181124 -115356135 + MLT1C LTR MaLR 18 460 -7 3 868 1111 58 19 13 chr5 37181353 37181511 -115355748 - B2_Mm2 SINE B2 -14 181 23 3 868 296 197 49 0 chr5 37181511 37181572 -115355687 - B3 SINE B2 -41 175 112 3 868 273 0 83 21 chr5 37181617 37181665 -115355594 + (TTTTG)n Simple_repeat Simple_repeat 3 53 0 3 868 1228 54 0 0 chr5 37181674 37181821 -115355438 - B1_Mus1 SINE Alu 0 148 2 3 868 362 293 51 45 chr5 37184140 37184297 -115352962 - MLT1I LTR MaLR -248 163 6 3 868 211 216 118 0 chr5 37184762 37184813 -115352446 + B1F SINE Alu 84 140 -9 3 868 771 231 77 5 chr5 37184929 37185125 -115352134 - B3 SINE B2 -4 212 3 3 868 27 0 0 0 chr5 37185125 37185152 -115352107 + AT_rich Low_complexity Low_complexity 1 27 0 3 868 438 263 0 0 chr5 37185175 37185274 -115351985 - RSINE1 SINE B4 -33 132 34 3 868 222 192 0 0 chr5 37187053 37187105 -115350154 + A-rich Low_complexity Low_complexity 1 52 0 3 868 27 29 0 0 chr5 37187546 37187580 -115349679 + GC_rich Low_complexity Low_complexity 1 34 0 3 868 22 0 0 0 chr5 37187676 37187698 -115349561 + GC_rich Low_complexity Low_complexity 1 22 0 3 868 630 223 56 28 chr5 37188206 37188349 -115348910 - B1F SINE Alu -1 148 2 3 868 507 138 138 57 chr5 37188375 37188498 -115348761 + B1_Mur2 SINE Alu 17 149 0 3 868 192 40 0 0 chr5 37188508 37188533 -115348726 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3 868 211 167 30 0 chr5 37189141 37189207 -115348052 + CT-rich Low_complexity Low_complexity 5 72 0 3 868 2992 177 91 39 chr5 37189310 37189981 -115347278 - RLTR40 LTR ERVK -7 810 105 3 868 3781 27 88 115 chr5 37189986 37190622 -115346637 - RLTR6_Mm LTR ERV1 -35 619 1 3 868 455 174 107 8 chr5 37190622 37190694 -115346565 - RLTR40 LTR ERVK -716 101 18 3 868 737 270 200 12 chr5 37190706 37191226 -115346033 + L1MC1 LINE L1 5687 6326 -18 3 868 319 339 34 25 chr5 37191255 37191373 -115345886 + B4A SINE B4 3 121 -171 3 868 210 321 0 0 chr5 37191376 37191429 -115345830 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 868 713 172 27 27 chr5 37191429 37191578 -115345681 + B4A SINE B4 134 282 -10 3 868 198 0 0 0 chr5 37191584 37191606 -115345653 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 868 543 164 35 35 chr5 37191808 37191922 -115345337 - RSINE1 SINE B4 -39 126 13 3 868 723 119 159 0 chr5 37192056 37192182 -115345077 - B1_Mus1 SINE Alu -1 147 2 3 868 212 328 16 0 chr5 37192182 37192243 -115345016 - B4 SINE B4 -229 63 2 3 868 22 0 0 0 chr5 37192254 37192276 -115344983 + AT_rich Low_complexity Low_complexity 1 22 0 3 868 1176 68 0 14 chr5 37192278 37192426 -115344833 - B1_Mus1 SINE Alu 0 148 3 3 868 180 0 0 0 chr5 37192432 37192452 -115344807 + (T)n Simple_repeat Simple_repeat 1 20 0 3 868 428 174 20 61 chr5 37192487 37192585 -115344674 - ID_B1 SINE B4 -1 223 130 3 868 306 0 0 0 chr5 37192616 37192650 -115344609 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 868 409 259 110 20 chr5 37192669 37192815 -115344444 + B4A SINE B4 124 282 -10 3 868 517 204 0 46 chr5 37192899 37193007 -115344252 + B1_Mur2 SINE Alu 21 123 -26 3 868 246 277 0 0 chr5 37193632 37193679 -115343580 + B1_Mur4 SINE Alu 1 47 -103 3 868 1032 83 7 14 chr5 37193679 37193842 -115343417 - B2_Mm2 SINE B2 -44 172 1 3 868 414 100 0 0 chr5 37194413 37194473 -115342786 + (TCCC)n Simple_repeat Simple_repeat 1 60 0 3 868 853 70 23 0 chr5 37194475 37194604 -115342655 + (TTTC)n Simple_repeat Simple_repeat 2 133 0 3 868 1157 50 7 0 chr5 37194604 37194743 -115342516 - B1_Mus1 SINE Alu -8 140 1 3 868 2766 176 161 40 chr5 37195592 37196249 -115341010 - RMER19A LTR ERVK 0 737 1 3 868 402 21 0 0 chr5 37196522 37196569 -115340690 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 868 807 191 28 0 chr5 37196783 37196799 -115340460 - B1_Mus1 SINE Alu -2 146 131 3 868 707 9 26 35 chr5 37196799 37196915 -115340344 + (GGAGA)n Simple_repeat Simple_repeat 2 116 0 3 868 807 191 28 0 chr5 37196915 37197039 -115340220 - B1_Mus1 SINE Alu -18 130 3 3 868 992 236 34 0 chr5 37197390 37197598 -115339661 - ID_B1 SINE B4 -8 216 2 3 868 242 279 0 0 chr5 37197614 37197675 -115339584 - B4A SINE B4 -151 141 81 3 868 32 0 0 0 chr5 37198173 37198205 -115339054 + AT_rich Low_complexity Low_complexity 1 32 0 3 868 276 111 0 0 chr5 37198809 37198854 -115338405 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 868 468 278 39 56 chr5 37199749 37199928 -115337331 + B4A SINE B4 105 280 -12 3 868 299 341 89 24 chr5 37200921 37201089 -115336170 + MTEa LTR MaLR 1 179 -200 3 868 189 0 0 0 chr5 37201113 37201134 -115336125 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 3 868 213 39 0 0 chr5 37202511 37202537 -115334722 + (AGGGGG)n Simple_repeat Simple_repeat 2 27 0 3 868 666 171 0 0 chr5 37202653 37202776 -115334483 + GA-rich Low_complexity Low_complexity 1 123 0 3 868 324 324 111 0 chr5 37202976 37203084 -115334175 - PB1D7 SINE Alu 0 120 1 3 868 1408 94 5 15 chr5 37203540 37203735 -115333524 + B2_Mm2 SINE B2 1 193 -2 3 868 206 330 33 11 chr5 37208253 37208345 -115328914 + MIRb SINE MIR 58 151 -117 3 868 709 223 0 51 chr5 37208585 37208741 -115328518 - B1_Mur3 SINE Alu 0 149 2 3 868 329 213 93 0 chr5 37211382 37211457 -115325802 - ID4 SINE ID -1 82 1 3 868 259 261 29 0 chr5 37212580 37212649 -115324610 + MIR SINE MIR 74 144 -64 3 868 482 254 17 8 chr5 37213432 37213551 -115323708 + PB1D7 SINE Alu 1 120 0 3 868 535 240 182 11 chr5 37213554 37213735 -115323524 + B3 SINE B2 1 212 -4 3 868 211 256 0 0 chr5 37214177 37214220 -115323039 - MIRb SINE MIR -190 78 36 3 868 186 338 40 26 chr5 37214673 37214749 -115322510 - MIR3 SINE MIR -45 163 87 3 868 822 203 67 34 chr5 37214791 37215000 -115322259 + B3 SINE B2 1 216 0 3 868 218 337 97 57 chr5 37215003 37215021 -115322238 - B3 SINE B2 -5 211 181 3 868 226 296 0 66 chr5 37215021 37215097 -115322162 - RSINE1 SINE B4 0 165 95 3 868 218 337 97 57 chr5 37215097 37215179 -115322080 - B3 SINE B2 -5 180 29 3 868 651 281 30 30 chr5 37216252 37216450 -115320809 + B3A SINE B2 1 198 0 3 868 262 279 26 51 chr5 37216501 37216618 -115320641 + BC1_Mm scRNA scRNA 1 114 -38 3 868 334 101 9 75 chr5 37216625 37216732 -115320527 + GA-rich Low_complexity Low_complexity 2 101 0 3 868 649 287 6 0 chr5 37217827 37217984 -115319275 - B3A SINE B2 -18 180 23 3 868 392 340 2 54 chr5 37218147 37218352 -115318907 - HAL1-2a_MD LINE L1 -517 2507 2343 3 868 255 103 0 0 chr5 37218369 37218408 -115318851 + (ATGGTG)n Simple_repeat Simple_repeat 6 44 0 3 868 225 310 76 25 chr5 37218764 37218883 -115318376 + ORR1C1 LTR MaLR 1 125 -253 3 868 265 370 83 8 chr5 37219654 37219918 -115317341 - L1MC4a LINE L1 -113 7769 7486 3 868 266 245 202 19 chr5 37222625 37222729 -115314530 + MLT1J1 LTR MaLR 13 135 -309 3 868 434 247 0 0 chr5 37222719 37222812 -115314447 - B3 SINE B2 -122 94 2 3 868 1304 238 149 7 chr5 37222815 37223230 -115314029 + RCHARR1 DNA MER1_type 1 474 -500 3 868 894 270 30 0 chr5 37223268 37223501 -115313758 - B4A SINE B4 -6 286 47 3 868 3435 113 14 12 chr5 37223716 37224235 -115313024 + RLTR28 LTR ERVL 1 520 -4 3 108 1016 261 41 73 chr5 37224312 37224491 -115312768 + ORR1E LTR MaLR 1 175 -184 3 869 545 42 14 0 chr5 37224491 37224563 -115312696 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 869 336 125 0 0 chr5 37224566 37224630 -115312629 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 869 1016 261 41 73 chr5 37224630 37224814 -115312445 + ORR1E LTR MaLR 176 347 -12 3 869 2860 133 15 112 chr5 37224999 37225483 -115311776 + RLTR24 LTR ERV1 3 441 -88 3 869 1617 59 0 5 chr5 37225483 37225687 -115311572 + L1_Mus1 LINE L1 6359 6561 -6 3 869 2860 133 15 112 chr5 37225687 37225785 -115311474 + RLTR24 LTR ERV1 442 529 0 3 869 652 262 55 65 chr5 37226732 37227080 -115310179 - MTE2a LTR MaLR -5 365 1 3 869 288 311 46 62 chr5 37227547 37227677 -115309582 + MIRc SINE MIR 21 148 -120 3 869 354 173 80 0 chr5 37227731 37227806 -115309453 - B3 SINE B2 -135 81 1 3 869 825 195 224 0 chr5 37228669 37228843 -115308416 - B3 SINE B2 0 216 4 3 869 361 184 92 0 chr5 37228857 37228933 -115308326 - L1M2 LINE L1 -3316 2827 2745 3 869 21 0 0 0 chr5 37229049 37229070 -115308189 + AT_rich Low_complexity Low_complexity 1 21 0 3 869 282 73 0 0 chr5 37229419 37229460 -115307799 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 869 785 245 7 0 chr5 37229464 37229611 -115307648 - RSINE1 SINE B4 -17 148 1 4 869 470 276 0 76 chr5 37229746 37229903 -115307356 + Lx8 LINE L1 7120 7264 -209 4 869 876 281 118 30 chr5 37230056 37230394 -115306865 + MTD LTR MaLR 52 419 0 4 869 385 272 39 16 chr5 37230846 37230973 -115306286 + MLT1C LTR MaLR 14 143 -324 4 869 388 263 40 0 chr5 37231692 37231791 -115305468 - PB1D10 SINE Alu -7 110 8 4 869 3610 118 96 5 chr5 37232043 37232647 -115304612 + RLTR33 LTR ERVK 20 678 0 4 869 663 248 0 39 chr5 37232655 37232810 -115304449 - B3A SINE B2 -47 151 3 4 869 2112 113 77 31 chr5 37233556 37233948 -115303311 + RMER17C LTR ERVK 1 410 0 4 869 1091 221 30 155 chr5 37234106 37234539 -115302720 + MTE2a LTR MaLR 1 379 0 4 869 1270 164 170 22 chr5 37234650 37234796 -115302463 + ORR1D1 LTR MaLR 1 175 -199 4 869 189 0 0 0 chr5 37234796 37234817 -115302442 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 4 869 1270 164 170 22 chr5 37234817 37234982 -115302277 + ORR1D1 LTR MaLR 176 357 -17 4 869 1903 208 43 39 chr5 37236330 37236746 -115300513 - MTD LTR MaLR -1 418 1 4 869 467 113 0 0 chr5 37237545 37237616 -115299643 + MTC LTR MaLR 4 74 -347 4 869 2196 160 5 18 chr5 37237616 37238004 -115299255 + Lx6 LINE L1 6678 7060 -400 4 869 1197 69 0 0 chr5 37238018 37238163 -115299096 - B1_Mus2 SINE Alu -1 146 2 4 869 1426 200 11 15 chr5 37238166 37238440 -115298819 + Lx6 LINE L1 7178 7450 -10 4 869 350 114 14 0 chr5 37238459 37238529 -115298730 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 869 1644 140 7 72 chr5 37238556 37238863 -115298396 + MTC LTR MaLR 1 287 -134 4 869 1093 87 0 0 chr5 37238928 37239066 -115298193 + B1_Mus1 SINE Alu 1 138 -10 4 869 767 250 55 109 chr5 37239254 37239658 -115297601 + RMER20B LTR ERVK 234 615 -12 4 869 343 317 0 0 chr5 37240506 37240588 -115296671 - ID4_ SINE ID 0 83 2 4 869 249 382 40 0 chr5 37240906 37241058 -115296201 - L1M5 LINE L1 -1050 5096 4939 4 869 870 212 62 0 chr5 37241140 37241366 -115295893 + MTEa LTR MaLR 140 379 0 4 869 207 0 0 0 chr5 37241461 37241484 -115295775 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 869 2086 154 7 75 chr5 37242268 37242681 -115294578 + ORR1B1 LTR MaLR 2 386 -8 4 869 207 200 22 0 chr5 37243103 37243148 -115294111 + G-rich Low_complexity Low_complexity 1 46 0 4 869 2172 131 14 71 chr5 37243426 37243861 -115293398 - RMER17C LTR ERVK 0 410 1 4 869 1057 168 119 0 chr5 37243999 37244201 -115293058 - URR1A DNA MER1_type 0 226 1 4 869 281 179 194 0 chr5 37244251 37244318 -115292941 - ID4_ SINE ID 0 83 4 4 869 204 262 22 77 chr5 37244436 37244527 -115292732 - L2 LINE L2 -364 3055 2970 4 869 476 210 369 0 chr5 37244607 37244764 -115292495 + B3 SINE B2 2 216 0 4 869 2320 130 23 23 chr5 37245313 37245747 -115291512 - RMER10A LTR ERVL 0 442 9 4 869 210 317 145 8 chr5 37245813 37245937 -115291322 + MIRb SINE MIR 36 176 -92 4 869 507 236 47 71 chr5 37246189 37246227 -115291032 - RSINE1 SINE B4 0 165 134 4 869 422 88 0 14 chr5 37246227 37246296 -115290963 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 869 507 236 47 71 chr5 37246296 37246426 -115290833 - RSINE1 SINE B4 -32 133 2 4 869 2941 21 33 6 chr5 37247205 37247542 -115289717 + ORR1A0 LTR MaLR 1 346 0 4 869 259 299 31 10 chr5 37247856 37247954 -115289305 + L1MEc LINE L1 489 588 -5812 4 869 313 317 132 67 chr5 37247972 37248358 -115288901 + L1MEc LINE L1 4598 5008 -1311 4 869 615 280 34 6 chr5 37248411 37248587 -115288672 + B4A SINE B4 41 221 -71 4 869 249 159 0 0 chr5 37248651 37248695 -115288564 + CT-rich Low_complexity Low_complexity 1 44 0 4 869 460 333 97 0 chr5 37248844 37249030 -115288229 - MER58A DNA MER1_type -14 210 7 4 869 311 335 18 30 chr5 37249080 37249246 -115288013 + L1MD LINE L1 5212 5375 -771 4 869 219 36 0 0 chr5 37249737 37249765 -115287494 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 869 785 266 54 0 chr5 37249781 37249984 -115287275 + ID_B1 SINE B4 3 216 -8 4 869 1766 201 70 3 chr5 37250040 37250399 -115286860 + MTD LTR MaLR 36 418 -1 4 869 1893 131 107 102 chr5 37250561 37250953 -115286306 - ORR1B1 LTR MaLR 0 394 1 4 869 1103 118 16 16 chr5 37250963 37251153 -115286106 - ORR1B2 LTR MaLR -177 190 1 4 869 211 140 58 39 chr5 37251259 37251311 -115285948 + B1_Mur4 SINE Alu 98 150 0 4 869 471 326 109 16 chr5 37251598 37251791 -115285468 + MIR SINE MIR 46 256 -6 4 869 425 255 31 0 chr5 37251804 37251902 -115285357 - B3 SINE B2 0 216 116 4 869 1375 120 0 5 chr5 37252002 37252195 -115285064 - B2_Mm2 SINE B2 -2 193 2 4 869 27 0 0 0 chr5 37252261 37252288 -115284971 + AT_rich Low_complexity Low_complexity 1 27 0 4 869 904 141 0 21 chr5 37252297 37252442 -115284817 - B1_Mus1 SINE Alu 0 148 7 4 869 556 211 148 66 chr5 37252452 37252635 -115284624 - B3A SINE B2 0 198 1 4 869 326 298 26 143 chr5 37252675 37252906 -115284353 + L1ME3A LINE L1 4651 4854 -1292 4 869 373 374 67 0 chr5 37253381 37253576 -115283683 - MER63A DNA AcHobo -2 208 1 4 869 590 251 232 9 chr5 37253927 37254160 -115283099 - B4A SINE B4 -1 291 7 4 869 277 212 115 23 chr5 37254260 37254347 -115282912 - BC1_Mm scRNA scRNA -56 96 2 4 869 383 277 10 0 chr5 37254478 37254579 -115282680 - MLT1I LTR MaLR 0 411 310 4 869 252 325 149 20 chr5 37255429 37255624 -115281635 + L1ME3A LINE L1 5777 5996 -177 4 869 1043 261 75 49 chr5 37255647 37255994 -115281265 + MTD LTR MaLR 1 356 -63 4 869 481 348 63 5 chr5 37256091 37256313 -115280946 - MLT1A LTR MaLR -33 341 107 4 869 716 251 91 0 chr5 37256327 37256514 -115280745 - B3 SINE B2 -11 205 2 4 869 534 265 44 100 chr5 37256735 37256986 -115280273 - MLT1A LTR MaLR -4 370 134 4 869 424 272 40 23 chr5 37259087 37259264 -115277995 + GA-rich Low_complexity Low_complexity 1 180 0 4 869 283 192 30 67 chr5 37259817 37259951 -115277308 + (CCCG)n Simple_repeat Simple_repeat 1 129 0 4 869 206 232 74 14 chr5 37261560 37261651 -115275608 + MIRc SINE MIR 120 222 -46 4 869 235 237 58 37 chr5 37261826 37261925 -115275334 + MIR SINE MIR 65 166 -110 4 869 1944 161 80 19 chr5 37262754 37263116 -115274143 + ORR1C2 LTR MaLR 1 384 0 4 869 4111 216 72 47 chr5 37263120 37264239 -115273020 + ORR1C2-int LTR MaLR 1 1146 -224 4 869 726 222 58 48 chr5 37264270 37264459 -115272800 - B3 SINE B2 -25 191 1 4 869 504 304 14 81 chr5 37264463 37264685 -115272574 - B4A SINE B4 -68 224 18 4 869 21 0 0 0 chr5 37264708 37264729 -115272530 + GC_rich Low_complexity Low_complexity 1 21 0 4 869 183 100 0 0 chr5 37264763 37264793 -115272466 + (CCCCAG)n Simple_repeat Simple_repeat 6 35 0 4 869 238 253 0 85 chr5 37264992 37265074 -115272185 - LTR86A1 LTR ERVL -403 110 36 4 869 189 299 65 0 chr5 37266804 37266881 -115270378 + MIR SINE MIR 48 129 -79 4 869 358 268 79 18 chr5 37267005 37267119 -115270140 - ID_B1 SINE B4 -20 204 84 4 869 240 200 0 0 chr5 37267828 37267868 -115269391 - ID4 SINE ID -32 51 12 4 869 251 269 21 41 chr5 37267877 37267974 -115269285 - PB1D10 SINE Alu 0 117 23 4 869 200 392 142 0 chr5 37268590 37268710 -115268549 + MIR SINE MIR 12 148 -114 4 869 1049 270 73 49 chr5 37269461 37269831 -115267428 - MTE2b LTR MaLR 0 379 1 4 869 282 241 193 44 chr5 37269986 37270153 -115267106 - MLT1J LTR MaLR -343 169 1 4 869 507 208 85 31 chr5 37270225 37270354 -115266905 + B1_Mus2 SINE Alu 3 138 -9 4 869 218 267 33 33 chr5 37270384 37270504 -115266755 - L2c LINE L2 -181 3206 3087 4 869 261 268 39 23 chr5 37270828 37270958 -115266301 + (TCTA)n Simple_repeat Simple_repeat 3 134 0 4 869 1035 285 56 59 chr5 37271121 37271332 -115265927 - MLT1B LTR MaLR 0 390 165 4 869 288 0 0 0 chr5 37271332 37271364 -115265895 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 869 1035 285 56 59 chr5 37271364 37271525 -115265734 - MLT1B LTR MaLR -226 164 19 4 869 235 331 96 8 chr5 37272939 37273064 -115264195 + Tigger6b DNA MER2_type 189 324 -1273 4 869 458 270 144 11 chr5 37273153 37273333 -115263926 + MLT1A LTR MaLR 164 367 -7 4 869 857 291 131 16 chr5 37274040 37274361 -115262898 + MTE2b LTR MaLR 19 376 -3 4 869 444 206 20 30 chr5 37274354 37274454 -115262805 + PB1D7 SINE Alu 1 99 -21 4 869 263 291 35 52 chr5 37274454 37274469 -115262790 + ID_B1 SINE B4 82 194 -30 4 869 605 306 70 0 chr5 37274487 37274686 -115262573 + Tigger6b DNA MER2_type 1378 1590 -7 4 869 333 0 0 0 chr5 37275226 37275263 -115261996 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 869 830 233 225 59 chr5 37276062 37276386 -115260873 - MTEb LTR MaLR 0 379 2 4 869 957 152 141 0 chr5 37277179 37277377 -115259882 - URR1A DNA MER1_type 0 226 1 4 869 207 100 0 0 chr5 37278942 37278972 -115258287 + (GGGGA)n Simple_repeat Simple_repeat 5 34 0 4 869 470 242 0 7 chr5 37281257 37281379 -115255880 + B1F SINE Alu 1 118 -2 4 869 802 186 217 17 chr5 37281383 37281563 -115255696 + B3 SINE B2 1 216 0 4 869 23 0 0 0 chr5 37281563 37281586 -115255673 + AT_rich Low_complexity Low_complexity 1 23 0 4 869 1154 67 152 0 chr5 37282477 37282641 -115254618 - B2_Mm2 SINE B2 -6 189 1 4 869 295 371 95 6 chr5 37283345 37283513 -115253746 - MIR SINE MIR -5 257 75 4 869 444 19 0 0 chr5 37284251 37284304 -115252955 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 869 243 337 10 0 chr5 37284811 37284923 -115252336 - MIRc SINE MIR -133 143 31 4 869 274 339 69 32 chr5 37285458 37285647 -115251612 + MIRb SINE MIR 25 220 -48 5 869 287 253 22 11 chr5 37286182 37286274 -115250985 + CT-rich Low_complexity Low_complexity 5 97 0 5 869 417 39 0 0 chr5 37286547 37286598 -115250661 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 869 389 271 221 55 chr5 37287926 37288274 -115248985 - MLT1A1 LTR MaLR -2 406 1 5 869 865 224 103 15 chr5 37288603 37288807 -115248452 + ID_B1 SINE B4 1 222 -2 5 869 278 345 26 0 chr5 37290028 37290141 -115247118 - Tigger9a DNA Tigger -568 164 49 5 869 295 309 157 46 chr5 37290604 37290801 -115246458 + MER46C DNA MER2_type 77 295 -43 5 869 1372 151 36 5 chr5 37292113 37292332 -115244927 - URR1A DNA MER1_type 0 226 1 5 869 1490 62 0 15 chr5 37292599 37292795 -115244464 - B2_Mm2 SINE B2 -2 193 1 5 869 287 140 330 27 chr5 37292804 37292913 -115244346 - B2_Mm2 SINE B2 -6 189 48 5 869 1143 109 79 0 chr5 37292948 37293113 -115244146 - B2_Mm1t SINE B2 -14 179 2 5 869 205 216 0 38 chr5 37293601 37293654 -115243605 + (CCCA)n Simple_repeat Simple_repeat 4 54 0 5 869 626 298 55 35 chr5 37293667 37293921 -115243338 + MLT1B LTR MaLR 80 338 -52 5 869 516 246 26 0 chr5 37293933 37294047 -115243212 + ID_B1 SINE B4 103 219 -5 5 869 219 103 0 0 chr5 37294418 37294457 -115242802 + (T)n Simple_repeat Simple_repeat 1 39 0 5 869 809 245 20 167 chr5 37294472 37294771 -115242488 - MTE2a LTR MaLR -124 255 1 5 869 317 286 47 9 chr5 37294985 37295091 -115242168 - MLT1A1 LTR MaLR -279 129 20 5 869 217 222 31 16 chr5 37295635 37295699 -115241560 + GA-rich Low_complexity Low_complexity 1 65 0 5 869 372 22 0 0 chr5 37297073 37297118 -115240141 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 869 361 154 0 21 chr5 37297555 37297648 -115239611 + (CA)n Simple_repeat Simple_repeat 2 92 0 5 869 694 249 120 37 chr5 37298075 37298292 -115238967 - MTEa LTR MaLR -87 292 58 5 869 210 328 0 0 chr5 37298550 37298617 -115238642 + MIRc SINE MIR 54 120 -148 5 869 3140 168 25 70 chr5 37300456 37301128 -115236131 + RLTR26 LTR ERVK 1 642 0 5 869 480 35 0 0 chr5 37301448 37301506 -115235753 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 869 204 143 0 0 chr5 37301598 37301640 -115235619 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 5 869 2006 44 48 12 chr5 37301661 37301913 -115235346 - L1Md_F2 LINE L1 -1 6581 6321 5 869 216 241 46 46 chr5 37302752 37302839 -115234420 + MIRc SINE MIR 65 151 -117 5 869 555 96 0 0 chr5 37304655 37304738 -115232521 + (TCC)n Simple_repeat Simple_repeat 1 83 0 5 869 571 8 148 15 chr5 37306718 37306853 -115230406 + (CAGC)n Simple_repeat Simple_repeat 4 156 0 5 869 219 139 0 0 chr5 37307122 37307158 -115230101 + (ATG)n Simple_repeat Simple_repeat 1 36 0 5 869 2377 120 81 5 chr5 37307166 37307550 -115229709 - MTC LTR MaLR -8 413 1 5 869 408 40 0 0 chr5 37309264 37309314 -115227945 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 869 226 241 156 56 chr5 37310526 37310677 -115226582 - MIRm SINE MIR -94 182 16 5 869 194 400 11 0 chr5 37310732 37310827 -115226432 + MIRc SINE MIR 172 267 -1 5 869 369 226 21 11 chr5 37310924 37311018 -115226241 + L1MA10 LINE L1 6236 6330 -4 5 869 238 254 0 0 chr5 37312185 37312248 -115225011 - MLT1H2 LTR MaLR -343 146 84 5 869 324 0 0 0 chr5 37312870 37312906 -115224353 + (CCCTG)n Simple_repeat Simple_repeat 5 40 0 5 869 429 283 35 38 chr5 37314752 37314782 -115222477 - ID_B1 SINE B4 -38 254 146 5 869 686 168 46 0 chr5 37314782 37314913 -115222346 - B1_Mus2 SINE Alu 0 147 11 5 869 429 283 35 38 chr5 37314913 37314930 -115222329 - ID_B1 SINE B4 -38 145 76 5 869 201 328 17 42 chr5 37315366 37315484 -115221775 - MIR SINE MIR -62 200 86 5 869 673 292 135 17 chr5 37316066 37316296 -115220963 + B4 SINE B4 36 292 0 5 869 298 361 0 8 chr5 37316396 37316527 -115220732 + (CA)n Simple_repeat Simple_repeat 1 130 0 5 869 342 67 0 0 chr5 37316551 37316596 -115220663 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 869 3444 30 8 0 chr5 37316667 37317060 -115220199 - MTA_Mm LTR MaLR 0 396 1 5 869 409 168 0 105 chr5 37317067 37317267 -115219992 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 869 237 65 0 0 chr5 37317341 37317372 -115219887 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 869 544 274 123 22 chr5 37318123 37318351 -115218908 - MLT2D LTR ERVL -154 260 10 5 869 2471 184 46 39 chr5 37318993 37319537 -115217722 - RMER15 LTR ERVL -5 570 23 5 869 1360 145 27 9 chr5 37319547 37319769 -115217490 - URR1A DNA MER1_type 0 226 1 5 869 842 219 123 15 chr5 37320233 37320428 -115216831 + B3 SINE B2 1 216 0 5 869 834 321 101 20 chr5 37321509 37321637 -115215622 - RMER5 LTR ERV1 -10 524 392 5 869 1148 119 51 6 chr5 37321637 37321815 -115215444 - B2_Mm2 SINE B2 -7 188 3 5 869 834 321 101 20 chr5 37321815 37322131 -115215128 - RMER5 LTR ERV1 -143 391 44 5 869 351 0 0 0 chr5 37322147 37322186 -115215073 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 869 279 0 0 0 chr5 37322186 37322216 -115215043 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 869 3760 62 46 22 chr5 37323262 37323761 -115213498 - RLTR1B LTR ERV1 0 512 2 5 869 258 250 12 62 chr5 37324069 37324150 -115213109 - MIRm SINE MIR -1 275 199 5 869 599 71 12 0 chr5 37324361 37324446 -115212813 + (GA)n Simple_repeat Simple_repeat 1 86 0 5 869 207 0 0 0 chr5 37324892 37324915 -115212344 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 869 333 0 0 0 chr5 37324929 37324966 -115212293 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 869 495 0 0 0 chr5 37325017 37325072 -115212187 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 869 334 357 93 30 chr5 37326735 37327035 -115210224 + MLT1B LTR MaLR 56 374 -16 5 869 181 207 79 79 chr5 37328387 37328450 -115208809 - MIR3 SINE MIR -28 180 118 5 869 181 167 0 0 chr5 37328421 37328451 -115208808 - MIRc SINE MIR -119 149 120 5 869 452 249 235 6 chr5 37328753 37328923 -115208336 + MTEb LTR MaLR 1 209 -170 5 869 585 118 18 9 chr5 37328925 37329036 -115208223 + (TCCC)n Simple_repeat Simple_repeat 2 113 0 5 869 724 190 36 0 chr5 37329135 37329272 -115207987 - B1_Mur1 SINE Alu -1 148 7 5 869 325 239 0 0 chr5 37329280 37329347 -115207912 + MTEb LTR MaLR 313 379 0 5 869 4855 106 39 35 chr5 37330153 37330958 -115206301 - RLTR13C2 LTR ERVK 0 808 1 5 869 206 340 60 30 chr5 37331863 37331963 -115205296 + L2b LINE L2 3239 3341 -34 5 869 243 0 0 0 chr5 37331965 37331992 -115205267 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 5 869 795 189 40 59 chr5 37333800 37334002 -115203257 - B3A SINE B2 0 198 1 5 869 966 140 0 16 chr5 37334033 37334215 -115203044 + CT-rich Low_complexity Low_complexity 2 180 0 5 869 495 256 25 0 chr5 37334226 37334347 -115202912 - MTE2a LTR MaLR 0 379 256 5 869 332 278 56 95 chr5 37334339 37334570 -115202689 - RMER10A LTR ERVL -16 426 205 5 869 576 231 17 8 chr5 37334789 37334907 -115202352 - MTE2a LTR MaLR -108 271 153 5 869 1460 275 75 31 chr5 37334886 37335135 -115202124 - MTE2b-int LTR MaLR -1034 546 278 5 869 1989 109 77 30 chr5 37335135 37335474 -115201785 - RLTR15 LTR ERVK 0 359 5 5 869 1460 275 75 31 chr5 37335474 37335746 -115201513 - MTE2b-int LTR MaLR -1303 277 2 5 869 1221 277 56 22 chr5 37335746 37336098 -115201161 - MTE2b LTR MaLR -15 364 1 5 869 268 257 78 19 chr5 37337083 37337186 -115200073 - MLT1D LTR MaLR -123 382 274 5 869 209 294 57 32 chr5 37337932 37338057 -115199202 + MIRb SINE MIR 78 216 -52 5 869 486 0 0 0 chr5 37338172 37338226 -115199033 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 5 869 189 346 0 12 chr5 37339019 37339101 -115198158 - L2b LINE L2 -213 3162 3082 5 869 923 178 200 0 chr5 37339904 37340084 -115197175 + B3 SINE B2 1 216 0 5 869 403 221 16 0 chr5 37343083 37343210 -115194049 + (CA)n Simple_repeat Simple_repeat 2 130 0 5 869 287 373 9 9 chr5 37347110 37347221 -115190038 - MIR SINE MIR -101 161 51 5 869 529 301 90 6 chr5 37347539 37347716 -115189543 - B4A SINE B4 -88 204 13 5 869 649 225 258 9 chr5 37348275 37348504 -115188755 + B4 SINE B4 2 287 -5 5 869 2296 161 44 77 chr5 37348535 37349040 -115188219 + RMER19B LTR ERVK 1 488 -414 5 869 596 207 71 7 chr5 37349017 37349158 -115188101 - RMER19B LTR ERVK -752 150 1 5 869 344 290 73 44 chr5 37349463 37349600 -115187659 - MIRm SINE MIR -107 169 29 5 869 416 266 39 15 chr5 37350184 37350314 -115186945 - B3 SINE B2 0 216 84 5 869 927 247 20 5 chr5 37351479 37351678 -115185581 + B3 SINE B2 7 208 -8 5 869 218 291 76 0 chr5 37352258 37352337 -115184922 + MIR SINE MIR 41 125 -83 5 869 938 269 171 27 chr5 37353099 37353539 -115183720 + RMER5 LTR ERV1 32 534 0 5 869 630 0 0 0 chr5 37353960 37354030 -115183229 + (GA)n Simple_repeat Simple_repeat 2 71 0 5 869 1262 123 10 19 chr5 37354181 37354389 -115182870 - URR1B DNA MER1_type -19 206 1 5 870 633 193 13 60 chr5 37356281 37356430 -115180829 + B1F SINE Alu 7 148 -1 5 870 1065 261 41 56 chr5 37356470 37356860 -115180399 + MTD LTR MaLR 19 402 -17 5 870 564 15 0 0 chr5 37357237 37357302 -115179957 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 870 357 24 0 0 chr5 37357980 37358022 -115179237 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 870 1318 195 144 35 chr5 37360157 37360503 -115176756 + ORR1C2 LTR MaLR 1 384 0 5 870 971 145 0 0 chr5 37360609 37360747 -115176512 + B1_Mus1 SINE Alu 2 139 -9 5 870 28 0 0 0 chr5 37360765 37360793 -115176466 + AT_rich Low_complexity Low_complexity 1 28 0 5 870 219 103 0 0 chr5 37363575 37363614 -115173645 + (T)n Simple_repeat Simple_repeat 1 39 0 5 870 1326 108 27 0 chr5 37366148 37366334 -115170925 + B2_Mm2 SINE B2 1 191 -4 5 870 23 54 0 0 chr5 37367088 37367125 -115170134 + AT_rich Low_complexity Low_complexity 1 37 0 5 870 616 231 0 8 chr5 37367133 37367255 -115170004 - RSINE1 SINE B4 -44 121 1 6 870 338 283 103 48 chr5 37367267 37367412 -115169847 + MER58B DNA MER1_type 172 324 -17 6 870 244 250 0 0 chr5 37367417 37367469 -115169790 - MIR3 SINE MIR -44 164 113 6 870 572 306 72 28 chr5 37368611 37368860 -115168399 - MLT1A0 LTR MaLR -32 333 74 6 870 372 43 0 0 chr5 37371261 37371307 -115165952 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 870 1116 135 53 0 chr5 37371307 37371477 -115165782 - B2_Mm2 SINE B2 -16 179 1 6 870 21 45 0 22 chr5 37374057 37374086 -115163173 + AT_rich Low_complexity Low_complexity 1 29 0 6 870 1202 82 0 0 chr5 37374086 37374233 -115163026 + B1_Mus1 SINE Alu 2 148 0 6 870 21 45 0 22 chr5 37374233 37374249 -115163010 + AT_rich Low_complexity Low_complexity 1 16 0 6 870 504 174 10 0 chr5 37374249 37374347 -115162912 - B2_Mm1t SINE B2 -14 179 81 6 870 426 288 90 28 chr5 37376088 37376299 -115160960 + ID_B1 SINE B4 1 224 0 6 870 616 168 16 16 chr5 37376173 37376300 -115160959 + B1_Mus1 SINE Alu 22 148 0 6 870 734 247 17 6 chr5 37376352 37376531 -115160728 + B4 SINE B4 112 292 0 6 870 181 299 142 25 chr5 37379213 37379333 -115157926 + MIRc SINE MIR 32 165 -103 6 870 261 0 0 0 chr5 37380841 37380870 -115156389 + (T)n Simple_repeat Simple_repeat 1 29 0 6 870 22 0 0 0 chr5 37381333 37381355 -115155904 + AT_rich Low_complexity Low_complexity 1 22 0 6 870 582 294 130 44 chr5 37381422 37381760 -115155499 - MLT1A1 LTR MaLR 0 408 42 6 870 274 265 312 22 chr5 37381786 37381837 -115155422 - L1MA6 LINE L1 -7 6293 6245 6 870 378 0 0 0 chr5 37381837 37381879 -115155380 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 870 387 0 0 0 chr5 37381879 37381921 -115155338 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 870 274 265 312 22 chr5 37381921 37382092 -115155167 - L1MA6 LINE L1 -56 6244 6006 6 870 486 286 65 70 chr5 37382620 37382834 -115154425 + B4A SINE B4 80 292 0 6 870 243 167 0 57 chr5 37382836 37382906 -115154353 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 870 210 118 0 0 chr5 37382918 37382952 -115154307 + (GGA)n Simple_repeat Simple_repeat 2 35 0 6 870 423 0 0 0 chr5 37383539 37383586 -115153673 + (GGAA)n Simple_repeat Simple_repeat 4 50 0 6 870 1261 198 2 117 chr5 37383593 37384056 -115153203 - RMER17C LTR ERVK 0 410 1 6 870 1363 189 20 0 chr5 37384266 37384510 -115152749 - MTD LTR MaLR 0 419 171 6 870 430 236 111 41 chr5 37384760 37384932 -115152327 + MLT1D LTR MaLR 82 265 -240 6 870 1248 47 0 0 chr5 37385282 37385430 -115151829 + B1_Mus1 SINE Alu 1 148 0 6 870 2962 62 2 19 chr5 37385520 37385780 -115151479 + MTB_Mm LTR MaLR 1 260 -147 6 870 2590 21 223 0 chr5 37385780 37386116 -115151143 + IAPLTR2a LTR ERVK 1 411 0 6 870 2962 62 2 19 chr5 37386116 37386269 -115150990 + MTB_Mm LTR MaLR 261 407 0 6 870 192 333 27 0 chr5 37386357 37386432 -115150827 + MER5A DNA MER1_type 91 167 -22 6 870 1899 181 52 52 chr5 37386441 37386560 -115150699 + MTD LTR MaLR 1 120 -299 6 870 1476 83 5 0 chr5 37386560 37386752 -115150507 - B2_Mm1a SINE B2 0 193 1 6 870 1899 184 52 51 chr5 37386752 37387053 -115150206 + MTD LTR MaLR 121 407 -12 6 870 354 23 0 0 chr5 37387774 37387817 -115149442 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 870 187 111 0 0 chr5 37388434 37388461 -115148798 - L2c LINE L2 -227 3160 3134 6 870 326 302 119 30 chr5 37388770 37388971 -115148288 - L1MC1 LINE L1 -386 5947 5729 6 870 260 303 61 0 chr5 37389170 37389269 -115147990 - MIRb SINE MIR -73 195 91 6 870 1903 291 55 37 chr5 37389754 37390743 -115146516 - L1M2 LINE L1 -900 5243 4238 6 870 895 221 66 162 chr5 37390782 37391189 -115146070 + RLTR18 LTR ERVK 1 467 -149 6 870 365 232 56 84 chr5 37391196 37391375 -115145884 - RLTR15 LTR ERVK -17 342 169 6 870 1309 122 60 44 chr5 37391375 37391623 -115145636 - LTRIS2 LTR ERV1 0 564 313 6 870 242 219 14 72 chr5 37391741 37391810 -115145449 - MURVY-LTR LTR ERV1 -388 131 67 6 870 471 249 39 56 chr5 37391828 37392007 -115145252 - RLTR15 LTR ERVK -183 176 1 6 870 392 214 192 7 chr5 37392007 37392137 -115145122 + RLTR18B LTR ERVK 356 512 0 6 870 286 268 128 8 chr5 37392290 37392436 -115144823 + L2a LINE L2 3025 3186 -189 6 870 246 292 10 50 chr5 37392640 37392741 -115144518 + MIR SINE MIR 45 141 -67 6 870 269 277 48 38 chr5 37393493 37393598 -115143661 - MER5A1 DNA MER1_type -32 134 29 6 870 225 96 57 19 chr5 37393914 37393967 -115143292 + (TTTG)n Simple_repeat Simple_repeat 1 55 0 6 870 1129 88 0 20 chr5 37393968 37394119 -115143140 - B1_Mus1 SINE Alu 0 148 1 6 870 2029 137 63 50 chr5 37394190 37394552 -115142707 - ORR1B2 LTR MaLR 0 367 1 6 870 2164 189 14 14 chr5 37394571 37394990 -115142269 - MTD LTR MaLR 0 419 1 6 870 431 302 83 47 chr5 37395083 37395361 -115141898 - B4A SINE B4 -4 288 1 6 870 286 326 56 0 chr5 37395434 37395523 -115141736 + MTEa LTR MaLR 8 101 -278 6 870 993 83 68 0 chr5 37395523 37395656 -115141603 + B1_Mus1 SINE Alu 1 142 -6 6 870 834 39 0 0 chr5 37395657 37395759 -115141500 + (GA)n Simple_repeat Simple_repeat 1 102 0 6 870 8128 76 9 50 chr5 37395816 37396190 -115141069 + RLTR13D3 LTR ERVK 1 378 -736 6 870 1118 62 7 7 chr5 37396190 37396335 -115140924 + B1_Mm SINE Alu 3 147 0 6 870 8128 76 9 50 chr5 37396335 37397116 -115140143 + RLTR13D3 LTR ERVK 379 1109 -5 6 870 664 331 94 43 chr5 37397139 37397467 -115139792 + MT2A LTR ERVL 189 533 0 6 870 1381 251 51 87 chr5 37397472 37397865 -115139394 + MTEa LTR MaLR 1 379 0 6 870 777 297 16 37 chr5 37397972 37398217 -115139042 + B4A SINE B4 45 284 -8 6 870 219 36 0 0 chr5 37398318 37398346 -115138913 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 870 504 293 104 27 chr5 37398353 37398721 -115138538 - L1MA4 LINE L1 -347 5944 5556 6 870 300 322 154 26 chr5 37398943 37399099 -115138160 - MER45R DNA Tip100 -1354 227 52 6 870 2614 120 58 245 chr5 37399126 37399975 -115137284 + RMER6C LTR ERVK 1 690 0 6 870 287 307 10 125 chr5 37400191 37400315 -115136944 - B1F1 SINE Alu 0 120 9 6 870 425 276 127 24 chr5 37400265 37400391 -115136868 - ID_B1 SINE B4 -85 139 1 6 870 182 342 13 40 chr5 37400488 37400564 -115136695 - L2b LINE L2 -23 3352 3279 6 870 27 49 0 0 chr5 37400564 37400605 -115136654 + AT_rich Low_complexity Low_complexity 1 41 0 6 870 356 252 112 43 chr5 37400618 37400734 -115136525 + B1F SINE Alu 19 142 -7 6 870 271 44 44 0 chr5 37401758 37401803 -115135456 + (CAAT)n Simple_repeat Simple_repeat 2 48 0 6 870 1127 77 7 0 chr5 37402686 37402829 -115134430 + B1_Mus1 SINE Alu 5 148 0 6 870 369 0 0 0 chr5 37402888 37402929 -115134330 + (TTG)n Simple_repeat Simple_repeat 2 42 0 6 870 320 252 210 8 chr5 37403091 37403215 -115134044 + MLT1B LTR MaLR 1 149 -241 6 870 516 289 19 32 chr5 37403329 37403486 -115133773 + MLT1J LTR MaLR 55 209 -303 6 870 1210 75 0 0 chr5 37403503 37403650 -115133609 - B1_Mus2 SINE Alu 0 147 1 6 870 1275 214 173 15 chr5 37403826 37404162 -115133097 - MTD LTR MaLR -13 406 18 6 870 902 322 96 29 chr5 37405171 37405484 -115131775 + MTEa LTR MaLR 1 334 -45 6 870 1759 157 11 112 chr5 37405558 37405924 -115131335 + ORR1A4 LTR MaLR 1 329 0 6 870 402 79 0 0 chr5 37407660 37407723 -115129536 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 6 870 1597 32 21 0 chr5 37408056 37408244 -115129015 - B2_Mm1t SINE B2 0 193 2 6 870 322 226 149 11 chr5 37408361 37408388 -115128871 + B1F SINE Alu 43 147 0 6 870 412 169 0 0 chr5 37408388 37408453 -115128806 + ID_B1 SINE B4 159 223 -1 6 870 216 0 0 0 chr5 37408484 37408508 -115128751 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 6 870 682 217 23 35 chr5 37408626 37408798 -115128461 + ID_B1 SINE B4 2 171 -53 6 870 407 143 0 25 chr5 37408871 37408950 -115128309 + GA-rich Low_complexity Low_complexity 3 79 0 6 870 632 284 39 40 chr5 37409416 37409761 -115127498 + L1M4 LINE L1 4733 5116 -1030 6 870 364 271 180 5 chr5 37409823 37410019 -115127240 + L1M4 LINE L1 5256 5478 -684 6 870 1222 248 32 3 chr5 37410021 37410304 -115126955 + B4A SINE B4 2 292 0 6 870 211 177 0 31 chr5 37410304 37410368 -115126891 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 870 725 245 49 83 chr5 37410372 37410577 -115126682 + B4 SINE B4 40 237 -55 6 870 707 108 9 0 chr5 37410689 37410800 -115126459 + (TC)n Simple_repeat Simple_repeat 1 112 0 6 870 258 284 52 7 chr5 37410807 37410942 -115126317 + L1M5 LINE L1 4577 4717 -1429 6 870 557 243 7 75 chr5 37411134 37411213 -115126046 + RSINE1 SINE B4 3 78 -87 6 870 4169 30 2 4 chr5 37411213 37411689 -115125570 + MT2C_Mm LTR ERVL 1 475 0 6 870 557 243 7 75 chr5 37411689 37411756 -115125503 + RSINE1 SINE B4 79 139 -26 6 870 567 90 30 0 chr5 37411756 37411856 -115125403 + (CA)n Simple_repeat Simple_repeat 1 103 0 6 870 1010 191 23 41 chr5 37413108 37413326 -115123933 - B3 SINE B2 0 216 3 6 870 778 184 0 0 chr5 37413345 37413470 -115123789 - B3 SINE B2 -54 162 38 6 870 1934 242 108 49 chr5 37413466 37414182 -115123077 - RLTR40 LTR ERVK -59 758 1 6 870 245 316 0 0 chr5 37414182 37414239 -115123020 + ID_B1 SINE B4 163 219 -5 6 870 1019 45 60 8 chr5 37414367 37414493 -115122766 + B1_Mm SINE Alu 2 134 -13 6 870 372 22 0 0 chr5 37414493 37414538 -115122721 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 6 870 267 286 0 0 chr5 37416064 37416127 -115121132 + B1F SINE Alu 18 80 -69 6 870 443 298 0 46 chr5 37416158 37416267 -115120992 + RSINE1 SINE B4 2 105 -60 6 870 351 0 0 0 chr5 37416275 37416314 -115120945 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 870 724 158 74 61 chr5 37416482 37416630 -115120629 + B1_Mur4 SINE Alu 1 150 0 7 870 348 148 0 0 chr5 37416764 37416825 -115120434 + (GGA)n Simple_repeat Simple_repeat 3 63 0 7 870 229 232 89 74 chr5 37416850 37416985 -115120274 + Arthur1B DNA Tip100 982 1118 -107 7 870 411 245 176 21 chr5 37417063 37417080 -115120179 - RSINE1 SINE B4 0 165 151 7 870 441 0 0 0 chr5 37417080 37417129 -115120130 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 870 411 245 176 21 chr5 37417129 37417253 -115120006 - RSINE1 SINE B4 -15 150 2 7 870 248 274 126 0 chr5 37417253 37417348 -115119911 + Arthur1B DNA Tip100 1104 1210 -15 7 870 244 361 41 73 chr5 37417485 37417730 -115119529 + MLT1J LTR MaLR 118 354 -158 7 870 600 263 68 28 chr5 37417983 37418148 -115119111 - MLT1C LTR MaLR -235 232 62 7 870 531 0 0 0 chr5 37418148 37418207 -115119052 + (GA)n Simple_repeat Simple_repeat 1 59 0 7 870 258 315 122 11 chr5 37418391 37418481 -115118778 + MLT1I LTR MaLR 33 132 -279 7 870 283 238 16 0 chr5 37418666 37418729 -115118530 + MLT1I LTR MaLR 348 411 0 7 870 211 276 130 13 chr5 37418954 37419031 -115118228 + L2a LINE L2 3331 3416 -10 7 870 342 270 30 53 chr5 37419150 37419283 -115117976 + MIRc SINE MIR 56 185 -83 7 870 242 302 0 19 chr5 37419936 37420044 -115117215 + C-rich Low_complexity Low_complexity 5 110 0 7 870 232 209 67 44 chr5 37421838 37421928 -115115331 + MIRb SINE MIR 63 154 -114 7 870 1120 248 5 0 chr5 37422754 37422968 -115114291 + B3 SINE B2 1 215 -1 7 870 327 280 20 0 chr5 37423623 37423723 -115113536 - L1MB3 LINE L1 -47 6136 6035 7 870 1753 239 30 15 chr5 37423893 37424292 -115112967 + MTD LTR MaLR 15 419 0 7 870 2515 248 125 59 chr5 37424292 37424782 -115112477 + MTD-int LTR MaLR 1 582 -676 7 870 189 0 0 0 chr5 37424782 37424803 -115112456 + (CAGGC)n Simple_repeat Simple_repeat 2 22 0 7 870 2515 240 100 20 chr5 37424803 37425233 -115112026 + MTD-int LTR MaLR 583 1063 -195 7 870 861 184 128 26 chr5 37425233 37425285 -115111974 - B3 SINE B2 -1 215 164 7 870 405 0 0 0 chr5 37425285 37425330 -115111929 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 870 861 184 128 26 chr5 37425330 37425472 -115111787 - B3 SINE B2 -53 163 3 7 870 2515 240 100 20 chr5 37425472 37425519 -115111740 + MTD-int LTR MaLR 1064 1110 -148 7 870 572 223 42 2 chr5 37425476 37425651 -115111608 - B3 SINE B2 -5 190 2 7 870 449 225 89 61 chr5 37425652 37425832 -115111427 + MTD-int LTR MaLR 1070 1254 -4 7 870 261 307 86 46 chr5 37425846 37425882 -115111377 - B2_Mm2 SINE B2 -7 188 10 7 870 632 259 22 7 chr5 37425882 37426018 -115111241 - RSINE1 SINE B4 -17 148 11 7 870 1328 186 163 34 chr5 37426031 37426387 -115110872 + MTD LTR MaLR 18 419 0 7 870 183 259 67 56 chr5 37427313 37427403 -115109856 + L2 LINE L2 2992 3082 -337 7 870 223 329 64 64 chr5 37428295 37428467 -115108792 + MIRm SINE MIR 65 236 -40 7 870 441 0 0 0 chr5 37429011 37429060 -115108199 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 870 904 276 19 19 chr5 37429126 37429340 -115107919 - B3 SINE B2 -2 214 1 7 870 2155 113 10 9 chr5 37429351 37429678 -115107581 - ORR1A2 LTR MaLR -1 418 1 7 870 354 262 153 43 chr5 37430710 37430945 -115106314 + Lx8 LINE L1 7213 7473 0 7 870 241 345 9 0 chr5 37430962 37431078 -115106181 + L1M4 LINE L1 2110 2226 -3920 7 870 525 299 70 11 chr5 37431078 37431264 -115105995 - MLT1A0 LTR MaLR 0 365 169 7 870 607 261 134 17 chr5 37431417 37431709 -115105550 + L1M4 LINE L1 2236 2561 -3585 7 870 227 273 30 0 chr5 37431722 37431788 -115105471 - tRNA-Ala-GCA tRNA tRNA -7 68 1 7 870 1559 216 148 74 chr5 37431835 37432444 -115104815 - Lx8 LINE L1 0 7473 6820 7 870 186 318 88 33 chr5 37432529 37432620 -115104639 + L2 LINE L2 84 179 -3240 7 870 23 54 0 0 chr5 37433811 37433848 -115103411 + AT_rich Low_complexity Low_complexity 1 37 0 7 870 937 239 85 31 chr5 37433906 37434165 -115103094 - B4A SINE B4 -19 273 1 7 870 354 305 79 24 chr5 37435079 37435325 -115101934 - MLT1A0 LTR MaLR -15 359 100 7 870 640 279 31 85 chr5 37436979 37437202 -115100057 - B4A SINE B4 0 292 82 7 870 234 0 0 0 chr5 37437202 37437228 -115100031 + (T)n Simple_repeat Simple_repeat 1 26 0 7 870 1228 48 0 0 chr5 37437228 37437375 -115099884 - B1_Mm SINE Alu 0 147 1 7 870 513 0 0 0 chr5 37437694 37437751 -115099508 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 870 328 50 0 0 chr5 37438502 37438542 -115098717 - HAL1-3A_ME LINE L1 -842 2016 1977 7 870 1134 161 43 42 chr5 37440098 37440558 -115096701 - RMER17C LTR ERVK 0 410 11 7 870 570 324 48 68 chr5 37442357 37442687 -115094572 - ORR1E LTR MaLR -1 369 29 7 870 842 258 119 28 chr5 37443091 37443529 -115093730 - L1MA5 LINE L1 -1566 5907 5477 7 870 266 306 7 110 chr5 37443555 37443691 -115093568 - B1_Mur3 SINE Alu -27 122 1 7 870 623 264 89 19 chr5 37443691 37443742 -115093517 - B4A SINE B4 -196 96 35 7 870 389 147 0 26 chr5 37443767 37443844 -115093415 + (CGTG)n Simple_repeat Simple_repeat 1 75 0 7 870 443 338 40 39 chr5 37443846 37444255 -115093004 - L1MA5 LINE L1 -699 5484 5040 7 870 952 181 57 0 chr5 37444285 37444462 -115092797 - B3 SINE B2 -15 201 15 7 870 781 304 11 8 chr5 37444471 37444733 -115092526 - L1MA5 LINE L1 -1077 5066 4804 7 870 1021 286 130 14 chr5 37444724 37445238 -115092021 - Lx8 LINE L1 -4 7469 6896 7 870 207 377 0 0 chr5 37445437 37445506 -115091753 + MIRc SINE MIR 56 124 -144 7 870 960 148 0 0 chr5 37445990 37446298 -115090961 + (TG)n Simple_repeat Simple_repeat 1 308 0 7 870 631 279 32 7 chr5 37446320 37446475 -115090784 - RSINE1 SINE B4 -6 159 1 7 870 2287 185 54 23 chr5 37446488 37447013 -115090246 - RLTR31A_Mm LTR ERVK 0 557 1 7 870 210 317 120 16 chr5 37447045 37447170 -115090089 - MIR3 SINE MIR -69 139 2 7 870 21 36 0 0 chr5 37449761 37449789 -115087470 + AT_rich Low_complexity Low_complexity 1 28 0 7 870 314 196 10 30 chr5 37449804 37449904 -115087355 + (TA)n Simple_repeat Simple_repeat 1 98 0 7 870 599 244 12 49 chr5 37450089 37450253 -115087006 - RSINE1 SINE B4 -7 158 1 7 870 519 45 0 0 chr5 37450291 37450357 -115086902 + (ATGGTG)n Simple_repeat Simple_repeat 6 71 0 7 870 306 125 0 0 chr5 37451268 37451316 -115085943 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 870 703 313 179 11 chr5 37451318 37451693 -115085566 - MLT1C LTR MaLR -10 457 20 7 870 1381 236 58 7 chr5 37451927 37452221 -115085038 - MTEa LTR MaLR -56 323 15 7 870 1730 200 102 8 chr5 37453563 37453946 -115083313 + MTD LTR MaLR 1 419 0 7 870 617 132 66 0 chr5 37454252 37454358 -115082901 + URR1B DNA MER1_type 1 113 -112 7 870 360 0 0 0 chr5 37454629 37454669 -115082590 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 870 531 195 270 58 chr5 37454741 37454875 -115082384 - B4 SINE B4 -81 211 42 7 870 3265 26 42 0 chr5 37454875 37455255 -115082004 + MTA_Mm LTR MaLR 1 396 0 7 870 531 195 270 58 chr5 37455255 37455294 -115081965 - B4 SINE B4 -251 41 1 7 870 297 0 0 0 chr5 37456757 37456790 -115080469 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 870 1179 74 0 13 chr5 37456797 37456947 -115080312 - B1_Mus1 SINE Alu 0 148 1 7 870 649 256 22 0 chr5 37456997 37457134 -115080125 - RSINE1 SINE B4 -11 154 15 7 870 1209 255 28 7 chr5 37457330 37457614 -115079645 + B4A SINE B4 1 290 -2 7 870 238 286 0 54 chr5 37457729 37457803 -115079456 + ID4 SINE ID 13 82 -1 7 870 287 146 18 0 chr5 37457973 37458028 -115079231 + G-rich Low_complexity Low_complexity 3 58 0 7 870 211 269 35 82 chr5 37458124 37458209 -115079050 - MIRb SINE MIR -80 188 108 7 870 197 140 0 23 chr5 37458881 37458925 -115078334 + (CGGT)n Simple_repeat Simple_repeat 3 45 0 7 870 8666 179 76 51 chr5 37459510 37459663 -115077596 - Lx7 LINE L1 -1 7695 7524 7 870 303 28 0 0 chr5 37459663 37459699 -115077560 + (TATAA)n Simple_repeat Simple_repeat 2 37 0 7 870 8666 179 76 51 chr5 37459699 37461157 -115076102 - Lx7 LINE L1 -173 7523 6021 7 870 339 25 0 0 chr5 37461157 37461197 -115076062 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 7 870 12341 143 57 130 chr5 37461197 37461923 -115075336 - Lx7 LINE L1 -1676 6020 5272 7 870 1165 63 0 0 chr5 37461923 37462065 -115075194 - B1_Mm SINE Alu -5 142 1 7 870 12341 134 52 149 chr5 37462065 37463124 -115074135 - Lx7 LINE L1 -609 5271 4637 7 870 366 61 0 0 chr5 37463124 37463173 -115074086 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 870 12341 134 52 149 chr5 37463173 37464823 -115072436 - Lx7 LINE L1 -1244 4636 2911 7 870 1801 153 72 4 chr5 37464816 37465362 -115071897 - Lx7 LINE L1 -4377 1503 919 7 870 1364 126 4 52 chr5 37465378 37465629 -115071630 - RLTR28 LTR ERVL -14 510 272 7 870 7579 57 35 0 chr5 37465629 37467104 -115070155 + L1_Mus1 LINE L1 5057 6567 0 7 870 1526 181 25 0 chr5 37467110 37467392 -115069867 - RLTR28 LTR ERVL -234 290 2 7 870 1929 184 32 43 chr5 37467392 37467862 -115069397 - Lx7 LINE L1 -6803 925 461 7 870 322 183 28 0 chr5 37467855 37467926 -115069333 - L1_Mur3 LINE L1 -7100 612 540 7 870 942 172 191 0 chr5 37468261 37468465 -115068794 - RMER15 LTR ERVL -60 515 273 7 870 465 208 111 59 chr5 37468486 37468639 -115068620 - RMER15 LTR ERVL -414 161 1 7 870 489 47 0 0 chr5 37468887 37468951 -115068308 + (TG)n Simple_repeat Simple_repeat 2 65 0 7 870 453 311 49 17 chr5 37470624 37470943 -115066316 - RLTR12B LTR ERVK -68 291 53 7 870 231 237 118 0 chr5 37471258 37471334 -115065925 - MLT1J1 LTR MaLR -293 151 67 7 870 211 191 0 0 chr5 37471638 37471680 -115065579 + CT-rich Low_complexity Low_complexity 2 43 0 7 870 1632 218 51 77 chr5 37472097 37472244 -115065015 - RCHARR1 DNA MER1_type -4 970 841 7 870 1053 127 7 0 chr5 37472244 37472386 -115064873 - B1_Mur4 SINE Alu -7 143 1 7 870 1632 218 51 77 chr5 37472386 37472745 -115064514 - RCHARR1 DNA MER1_type -134 840 477 7 870 421 257 183 17 chr5 37472775 37472890 -115064369 - RSINE1 SINE B4 -29 136 3 7 870 372 250 11 0 chr5 37472906 37472998 -115064261 - RCHARR1 DNA MER1_type -529 445 353 7 870 2676 71 17 3 chr5 37472998 37473352 -115063907 + L1_Mus1 LINE L1 6209 6567 0 7 870 316 306 157 48 chr5 37473606 37473836 -115063423 - L1MCa LINE L1 -4214 2294 2040 7 870 248 200 125 0 chr5 37473930 37474010 -115063249 - L1MCa LINE L1 -4638 1870 1781 7 870 293 24 49 0 chr5 37474075 37474116 -115063143 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 7 870 627 177 44 37 chr5 37474116 37474251 -115063008 - B1_Mur1 SINE Alu -13 136 1 7 870 290 305 102 35 chr5 37474254 37474597 -115062662 - L1MCa LINE L1 -4742 1766 1401 7 870 581 211 8 26 chr5 37474703 37474820 -115062439 + MTD LTR MaLR 1 115 -304 7 870 977 186 29 26 chr5 37474797 37474992 -115062267 + MTD LTR MaLR 223 397 -22 7 870 294 29 0 0 chr5 37475210 37475245 -115062014 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 870 309 281 35 0 chr5 37475295 37475409 -115061850 - L1MCa LINE L1 -5498 1010 893 7 870 207 255 0 18 chr5 37475649 37475705 -115061554 + CT-rich Low_complexity Low_complexity 4 58 0 7 870 197 276 110 44 chr5 37475893 37475984 -115061275 + MIR SINE MIR 74 170 -92 7 870 924 266 19 80 chr5 37477323 37477634 -115059625 - MTE2b LTR MaLR -87 292 1 8 870 261 351 33 13 chr5 37477634 37477780 -115059479 - MLT1B LTR MaLR -241 149 1 8 870 268 93 404 73 chr5 37477876 37477980 -115059279 - B2_Mm2 SINE B2 -10 185 48 8 870 1239 73 79 0 chr5 37478013 37478178 -115059081 - B2_Mm2 SINE B2 -14 181 4 8 870 1905 128 161 66 chr5 37478181 37478591 -115058668 + RMER4A LTR ERVK 18 466 0 8 870 1174 88 0 0 chr5 37478628 37478776 -115058483 + B1_Mus1 SINE Alu 1 148 0 8 870 235 80 60 0 chr5 37478782 37478832 -115058427 + (CAAAA)n Simple_repeat Simple_repeat 1 53 0 8 870 342 0 0 0 chr5 37478846 37478884 -115058375 + (TC)n Simple_repeat Simple_repeat 1 38 0 8 870 608 130 33 0 chr5 37478884 37478976 -115058283 + RMER4A LTR ERVK 369 463 -3 8 870 2747 51 30 0 chr5 37479321 37479657 -115057602 + ORR1A1 LTR MaLR 1 346 0 8 870 1043 279 47 75 chr5 37480885 37481262 -115055997 - MTEa LTR MaLR 0 379 14 8 870 1005 284 59 13 chr5 37481262 37481565 -115055694 - MTEa-int LTR MaLR -2 1578 1262 8 870 268 204 0 0 chr5 37481998 37482047 -115055212 + MYSERV6-int LTR ERVK 3721 3769 -5190 8 870 189 0 0 0 chr5 37482089 37482110 -115055149 + (A)n Simple_repeat Simple_repeat 1 21 0 8 870 231 173 0 0 chr5 37483240 37483292 -115053967 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 8 870 426 129 179 21 chr5 37483504 37483599 -115053660 - 5S rRNA rRNA -11 110 1 8 870 318 154 78 108 chr5 37484326 37484428 -115052831 + RSINE1 SINE B4 2 100 -65 8 870 21 36 0 0 chr5 37484492 37484520 -115052739 + AT_rich Low_complexity Low_complexity 1 28 0 8 870 1091 255 95 39 chr5 37484961 37485299 -115051960 - MTEa LTR MaLR -22 357 1 8 870 717 166 6 18 chr5 37485562 37485728 -115051531 + (TCTA)n Simple_repeat Simple_repeat 1 164 0 8 870 547 156 22 0 chr5 37485728 37485818 -115051441 - B1_Mur1 SINE Alu -3 146 55 8 870 251 332 53 24 chr5 37485869 37486116 -115051143 + L1M5 LINE L1 3873 4126 -2020 8 870 262 325 187 7 chr5 37486284 37486439 -115050820 - MLT1A1 LTR MaLR -100 308 126 8 871 390 21 0 0 chr5 37486737 37486784 -115050475 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 871 366 134 0 0 chr5 37487316 37487383 -115049876 + (TG)n Simple_repeat Simple_repeat 2 68 0 8 871 263 322 60 9 chr5 37487422 37487538 -115049721 + L1M5 LINE L1 4805 4926 -1220 8 871 324 0 0 0 chr5 37488287 37488323 -115048936 + (TAA)n Simple_repeat Simple_repeat 2 37 0 8 871 1699 21 5 0 chr5 37488381 37488573 -115048686 + B2_Mm1t SINE B2 1 193 0 8 871 697 288 127 17 chr5 37490108 37490454 -115046805 - MLT1C LTR MaLR -73 394 11 8 871 272 368 56 8 chr5 37490921 37491047 -115046212 - MLT1D LTR MaLR -96 409 278 8 871 182 116 0 23 chr5 37491070 37491114 -115046145 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 871 189 237 0 0 chr5 37491541 37491579 -115045680 - L4 LINE RTE -1277 752 715 8 871 243 170 0 0 chr5 37492216 37492263 -115044996 + GA-rich Low_complexity Low_complexity 3 49 0 8 871 199 305 16 48 chr5 37492263 37492325 -115044934 - L2b LINE L2 -21 3354 3295 8 871 441 0 0 0 chr5 37492489 37492538 -115044721 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 871 506 16 16 0 chr5 37493227 37493290 -115043969 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 871 241 235 70 42 chr5 37493688 37493759 -115043500 + tRNA-Gly-GGY tRNA tRNA 1 73 -1 8 871 752 263 28 11 chr5 37493696 37493877 -115043382 + ID_B1 SINE B4 13 196 -28 8 871 264 275 61 189 chr5 37493772 37493920 -115043339 + B1F SINE Alu 12 140 -9 8 871 368 40 0 20 chr5 37493931 37493982 -115043277 + (TC)n Simple_repeat Simple_repeat 2 51 0 8 871 971 136 0 12 chr5 37494100 37494271 -115042988 + (TCCC)n Simple_repeat Simple_repeat 4 172 0 8 871 599 290 7 0 chr5 37494277 37494422 -115042837 - RSINE1 SINE B4 -18 147 2 8 871 866 29 0 0 chr5 37498148 37498252 -115039007 + B1_Mus2 SINE Alu 44 147 0 8 871 24 0 0 0 chr5 37498762 37498786 -115038473 + AT_rich Low_complexity Low_complexity 1 24 0 8 871 504 281 15 21 chr5 37499320 37499473 -115037786 + ID_B1 SINE B4 90 246 -46 8 871 428 293 82 115 chr5 37499481 37499815 -115037444 - MLT1B LTR MaLR -2 388 68 8 871 312 48 0 0 chr5 37499815 37499857 -115037402 + (CATA)n Simple_repeat Simple_repeat 2 43 0 8 871 428 293 82 115 chr5 37499857 37499923 -115037336 - MLT1B LTR MaLR -323 67 2 8 871 521 221 79 64 chr5 37500271 37500403 -115036856 + B1_Mur1 SINE Alu 2 135 -14 1 871 207 0 0 0 chr5 37500403 37500426 -115036833 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2 871 735 264 90 0 chr5 37501576 37501777 -115035482 - ID_B1 SINE B4 -4 220 2 3 871 602 271 45 120 chr5 37502219 37502569 -115034690 - ORR1E LTR MaLR 0 370 32 4 871 1343 246 97 13 chr5 37503297 37503680 -115033579 - MTD LTR MaLR 0 419 5 5 871 250 125 15 45 chr5 37505267 37505334 -115031925 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 871 273 88 28 56 chr5 37505357 37505429 -115031830 + (TCTCTG)n Simple_repeat Simple_repeat 1 70 0 7 871 280 133 33 0 chr5 37505455 37505515 -115031744 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 871 231 88 0 0 chr5 37505580 37505614 -115031645 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 871 381 296 59 105 chr5 37505631 37505850 -115031409 - ID_B1 SINE B4 -15 209 1 1 871 400 250 64 9 chr5 37506279 37506388 -115030871 + PB1D10 SINE Alu 3 117 0 1 871 1229 61 0 0 chr5 37506393 37506540 -115030719 + B1_Mus1 SINE Alu 1 147 -1 1 871 246 284 63 0 chr5 37507917 37508012 -115029247 + L2b LINE L2 3275 3375 0 1 871 429 219 31 10 chr5 37510325 37510422 -115026837 + RSINE1 SINE B4 27 125 -40 1 871 525 16 0 0 chr5 37510422 37510484 -115026775 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 871 199 378 30 10 chr5 37510870 37510969 -115026290 - MIR SINE MIR -132 130 30 1 871 717 176 20 47 chr5 37511310 37511459 -115025800 + B1F SINE Alu 5 149 0 1 871 261 232 145 0 chr5 37511488 37511557 -115025702 - ID_B1 SINE B4 -65 159 81 1 871 444 82 0 0 chr5 37513046 37513107 -115024152 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 871 414 39 0 0 chr5 37513107 37513159 -115024100 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 871 598 349 108 52 chr5 37513159 37513658 -115023601 - MLT1H LTR MaLR -20 529 3 2 871 347 145 0 14 chr5 37513962 37514032 -115023227 + GA-rich Low_complexity Low_complexity 3 71 0 2 871 241 260 0 0 chr5 37516333 37516383 -115020876 + CT-rich Low_complexity Low_complexity 3 52 0 2 871 432 37 0 0 chr5 37520691 37520745 -115016514 + (TCCA)n Simple_repeat Simple_repeat 2 55 0 2 871 529 254 50 21 chr5 37523380 37523564 -115013695 + B3 SINE B2 2 195 0 2 871 597 176 10 0 chr5 37524200 37524302 -115012957 - PB1D9 SINE Alu -16 104 2 2 871 291 266 115 34 chr5 37526152 37526317 -115010942 + MIR3 SINE MIR 1 176 -32 2 871 1691 231 189 30 chr5 37527025 37527598 -115009661 - Lx6 LINE L1 -9 7451 6502 2 871 532 264 0 0 chr5 37527590 37527700 -115009559 - Lx5 LINE L1 -682 6368 6259 2 871 509 233 341 6 chr5 37527846 37528010 -115009249 + ID_B1 SINE B4 1 219 -5 3 871 282 106 0 0 chr5 37528027 37528074 -115009185 + (TTA)n Simple_repeat Simple_repeat 3 49 0 3 871 3006 80 29 17 chr5 37528075 37528496 -115008763 - Lx3B LINE L1 -3 6970 6545 3 871 7968 72 0 26 chr5 37529528 37531226 -115006033 + L1_Mus1 LINE L1 4747 6433 -134 3 871 1202 82 0 0 chr5 37531226 37531373 -115005886 - B1_Mus1 SINE Alu -1 147 1 3 871 7554 46 0 50 chr5 37531373 37531547 -115005712 + L1_Mus1 LINE L1 6434 6567 0 3 871 2502 77 3 58 chr5 37531854 37532200 -115005059 - ORR1A2 LTR MaLR 0 327 1 3 871 360 298 44 0 chr5 37534332 37534446 -115002813 + B4 SINE B4 172 290 -2 3 871 215 318 0 0 chr5 37534449 37534512 -115002747 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 871 371 73 18 0 chr5 37534522 37534577 -115002682 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 3 871 456 285 40 27 chr5 37534619 37534767 -115002492 + ID_B1 SINE B4 7 156 -68 3 871 23 33 0 0 chr5 37534794 37534824 -115002435 + AT_rich Low_complexity Low_complexity 1 30 0 4 871 390 91 0 0 chr5 37534994 37535049 -115002210 + (CGAA)n Simple_repeat Simple_repeat 2 56 0 4 871 634 113 8 73 chr5 37535237 37535494 -115001765 + (TATG)n Simple_repeat Simple_repeat 1 240 0 4 871 513 313 55 22 chr5 37535526 37535709 -115001550 - B4A SINE B4 -3 289 101 4 871 448 263 8 56 chr5 37536031 37536156 -115001103 + B3A SINE B2 80 198 0 4 871 201 39 0 0 chr5 37536162 37536188 -115001071 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 871 360 242 0 87 chr5 37536293 37536397 -115000862 + B1_Mus1 SINE Alu 2 96 -52 4 871 180 0 0 0 chr5 37537607 37537627 -114999632 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 4 871 1069 261 14 21 chr5 37537630 37537912 -114999347 + B4 SINE B4 8 287 -5 4 871 361 258 83 70 chr5 37539058 37539230 -114998029 - L1MEg LINE L1 -4132 2110 1976 4 871 262 45 42 70 chr5 37543396 37543467 -114993792 + A-rich Low_complexity Low_complexity 2 70 0 5 871 180 325 162 0 chr5 37543981 37544061 -114993198 - MIR SINE MIR -149 113 21 5 871 326 245 42 11 chr5 37544143 37544238 -114993021 - MER67C LTR ERV1 -37 674 577 5 871 379 268 26 35 chr5 37544333 37544449 -114992810 - MER67C LTR ERV1 -272 439 325 5 871 271 319 42 25 chr5 37545057 37545176 -114992083 + MIRb SINE MIR 56 176 -92 5 871 268 282 0 14 chr5 37546401 37546473 -114990786 + CT-rich Low_complexity Low_complexity 4 74 0 5 871 253 224 39 26 chr5 37546474 37546552 -114990707 - ID4_ SINE ID -3 80 2 5 871 1029 106 0 22 chr5 37546557 37546740 -114990519 + (TCCC)n Simple_repeat Simple_repeat 1 179 0 5 871 246 276 70 20 chr5 37546899 37546999 -114990260 - MTE2a LTR MaLR 0 379 275 5 871 678 230 7 7 chr5 37547387 37547523 -114989736 + RSINE1 SINE B4 3 138 -27 5 871 22 0 0 0 chr5 37547540 37547562 -114989697 + AT_rich Low_complexity Low_complexity 1 22 0 5 871 520 241 27 0 chr5 37547616 37547728 -114989531 + PB1D7 SINE Alu 1 115 -5 6 871 239 0 32 0 chr5 37548149 37548180 -114989079 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 871 386 310 31 8 chr5 37548282 37548412 -114988847 - ID_B1 SINE B4 -9 215 83 6 871 598 301 52 14 chr5 37548426 37548638 -114988621 + B4A SINE B4 5 224 -68 6 871 602 96 10 0 chr5 37548640 37548744 -114988515 + (GAAA)n Simple_repeat Simple_repeat 2 106 0 6 871 314 254 14 0 chr5 37548744 37548815 -114988444 + B4A SINE B4 216 287 -5 6 871 237 222 0 0 chr5 37548840 37548903 -114988356 + (CAGA)n Simple_repeat Simple_repeat 1 63 0 6 871 198 241 52 0 chr5 37550107 37550165 -114987094 + MIRm SINE MIR 88 148 -128 6 871 666 0 0 0 chr5 37550213 37550287 -114986972 + (GAAAA)n Simple_repeat Simple_repeat 2 75 0 6 871 306 0 0 0 chr5 37550385 37550419 -114986840 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 871 408 227 311 26 chr5 37550494 37550684 -114986575 - B4A SINE B4 -43 249 6 6 871 268 309 50 20 chr5 37550744 37550843 -114986416 + B1F SINE Alu 3 104 -45 7 871 544 276 26 7 chr5 37551646 37551799 -114985460 + MIRb SINE MIR 62 217 -51 7 871 321 47 0 0 chr5 37552091 37552134 -114985125 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 871 468 210 55 24 chr5 37552622 37552749 -114984510 + MTD LTR MaLR 99 229 -190 7 871 473 268 86 7 chr5 37553906 37554045 -114983214 - RSINE1 SINE B4 -4 161 12 7 871 208 274 39 10 chr5 37554202 37554305 -114982954 + (CGG)n Simple_repeat Simple_repeat 1 106 0 7 871 455 256 133 22 chr5 37555160 37555255 -114982004 - RMER30 DNA MER1_type -1 201 103 7 871 222 37 0 0 chr5 37555255 37555282 -114981977 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 7 871 455 256 133 22 chr5 37555282 37555366 -114981893 - RMER30 DNA MER1_type -100 102 2 7 871 404 241 104 25 chr5 37555366 37555599 -114981660 + MTEb LTR MaLR 98 419 0 7 871 387 275 165 18 chr5 37555634 37555854 -114981405 - MLT1A0 LTR MaLR -95 270 13 7 871 203 62 94 0 chr5 37555987 37556019 -114981240 + CT-rich Low_complexity Low_complexity 6 40 0 8 871 338 219 134 0 chr5 37556604 37556686 -114980573 + ID_B1 SINE B4 128 220 -4 8 871 210 258 16 0 chr5 37558548 37558610 -114978649 - L2b LINE L2 -16 3359 3297 8 871 652 305 36 21 chr5 37559005 37559199 -114978060 + B3A SINE B2 2 198 0 8 871 217 261 22 0 chr5 37559236 37559282 -114977977 + ID4 SINE ID 20 66 -17 8 871 267 157 0 0 chr5 37559293 37559344 -114977915 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 871 825 245 280 32 chr5 37559663 37559937 -114977322 - ORR1E LTR MaLR -8 371 30 8 871 236 207 244 0 chr5 37561344 37561426 -114975833 - MIRc SINE MIR -103 165 64 8 871 438 161 0 0 chr5 37562779 37562872 -114974387 + (TTCA)n Simple_repeat Simple_repeat 3 95 0 8 871 213 256 21 32 chr5 37564208 37564301 -114972958 - L2a LINE L2 -314 3112 3021 8 871 301 249 60 20 chr5 37566925 37567055 -114970204 - MIR SINE MIR -90 178 43 9 871 462 286 25 6 chr5 37567166 37567434 -114969825 + (TTCGGG)n Simple_repeat Simple_repeat 1 272 0 9 871 333 286 19 0 chr5 37567364 37567518 -114969741 + (CTGGGG)n Simple_repeat Simple_repeat 5 161 0 9 871 366 23 0 0 chr5 37567982 37568025 -114969234 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 871 386 350 78 54 chr5 37568029 37568325 -114968934 - L1MEg LINE L1 -4200 2000 1698 9 871 230 318 66 66 chr5 37568596 37568778 -114968481 - L1MEg LINE L1 -4883 1317 1136 9 871 221 211 0 17 chr5 37568814 37568872 -114968387 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 871 877 281 63 11 chr5 37568876 37569146 -114968113 - B4 SINE B4 -4 288 5 9 871 290 344 13 13 chr5 37569273 37569426 -114967833 - L1MEg LINE L1 -5149 1051 899 9 871 916 206 10 41 chr5 37571929 37572126 -114965133 + B3A SINE B2 1 191 -7 9 871 1008 98 0 0 chr5 37572150 37572293 -114964966 - B1_Mus1 SINE Alu 0 148 6 9 871 477 34 0 0 chr5 37572907 37572966 -114964293 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 9 871 1053 92 23 11 chr5 37572975 37573151 -114964108 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 1 871 201 147 0 0 chr5 37573202 37573236 -114964023 + (TAGA)n Simple_repeat Simple_repeat 3 36 0 1 871 226 321 17 94 chr5 37573237 37573354 -114963905 + Charlie2b DNA MER1_type 472 579 -2203 1 871 2592 118 37 8 chr5 37573694 37574095 -114963164 - MTC LTR MaLR -8 413 1 1 871 7168 40 0 2 chr5 37574510 37575354 -114961905 - L1Md_T LINE L1 -1 6581 5740 1 871 256 197 105 0 chr5 37575594 37575670 -114961589 - RMER1C Other Other -146 1196 1113 1 871 237 326 124 22 chr5 37575625 37575851 -114961408 - Lx8 LINE L1 -438 7258 7010 1 871 196 130 43 0 chr5 37577247 37577293 -114959966 + CT-rich Low_complexity Low_complexity 1 48 0 1 871 1475 146 18 0 chr5 37577611 37577831 -114959428 - URR1B DNA MER1_type -1 224 1 1 871 414 0 0 0 chr5 37579106 37579152 -114958107 + (GA)n Simple_repeat Simple_repeat 2 47 0 1 871 181 273 0 0 chr5 37579758 37579802 -114957457 + MIRb SINE MIR 207 250 -18 1 871 1631 224 54 22 chr5 37580318 37580724 -114956535 - MTD LTR MaLR 0 419 1 1 871 186 335 93 19 chr5 37581133 37581294 -114955965 - MIR SINE MIR -11 251 79 1 871 3001 65 52 0 chr5 37582167 37582554 -114954705 + MTB_Mm LTR MaLR 1 407 0 1 871 409 355 60 14 chr5 37582884 37583101 -114954158 + MTD LTR MaLR 193 419 0 1 871 217 132 0 0 chr5 37584261 37584299 -114952960 + (A)n Simple_repeat Simple_repeat 1 38 0 1 871 312 120 0 0 chr5 37585613 37585663 -114951596 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 871 369 0 0 0 chr5 37585664 37585705 -114951554 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 871 293 313 25 25 chr5 37586374 37586507 -114950752 + MIR SINE MIR 29 162 -106 1 871 1059 135 2 0 chr5 37591569 37591987 -114945272 + (CA)n Simple_repeat Simple_repeat 1 419 0 1 871 242 200 146 28 chr5 37592594 37592738 -114944521 - L1MC5 LINE L1 -283 7678 7518 1 871 224 248 40 0 chr5 37592811 37592912 -114944347 + (TCTG)n Simple_repeat Simple_repeat 3 107 0 1 871 240 305 37 0 chr5 37592912 37592994 -114944265 - L1MB3 LINE L1 -96 6087 6003 1 871 1192 88 0 0 chr5 37593005 37593153 -114944106 + B1_Mus1 SINE Alu 1 148 0 1 871 445 296 25 6 chr5 37593168 37593331 -114943928 - L1MB3 LINE L1 -246 5937 5772 1 871 326 149 30 0 chr5 37593541 37593608 -114943651 + CT-rich Low_complexity Low_complexity 4 72 0 1 871 525 321 5 72 chr5 37594020 37594228 -114943031 + ID_B1 SINE B4 17 210 -14 1 871 578 316 46 62 chr5 37594766 37595024 -114942235 + ORR1E LTR MaLR 1 250 -109 1 871 2605 103 56 56 chr5 37595024 37595454 -114941805 - RLTR23 LTR ERV1 0 430 1 1 871 578 321 46 72 chr5 37595454 37595555 -114941704 + ORR1E LTR MaLR 251 354 -5 1 871 410 0 20 0 chr5 37595744 37595794 -114941465 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 871 1122 301 3 3 chr5 37596671 37596958 -114940301 - B4A SINE B4 -3 289 3 1 871 207 0 0 0 chr5 37599398 37599421 -114937838 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 871 1045 118 0 0 chr5 37599421 37599559 -114937700 - B1_Mus1 SINE Alu -9 139 2 1 871 2070 112 29 96 chr5 37599612 37599997 -114937262 + ORR1B2 LTR MaLR 1 359 -8 1 871 502 238 0 28 chr5 37602413 37602521 -114934738 - PB1D7 SINE Alu -5 115 11 1 871 224 301 0 99 chr5 37602473 37602554 -114934705 - B4 SINE B4 -152 140 68 1 871 231 161 92 46 chr5 37602559 37602624 -114934635 - L1M5 LINE L1 -393 5769 5702 1 871 494 307 21 0 chr5 37603087 37603227 -114934032 + ID_B1 SINE B4 81 223 -1 1 871 225 253 184 78 chr5 37603664 37603767 -114933492 - PB1 SINE Alu -2 125 12 1 871 252 271 72 10 chr5 37604508 37604605 -114932654 + MIRc SINE MIR 35 137 -131 1 871 3209 23 2 85 chr5 37606851 37607274 -114929985 + RLTR10 LTR ERVK 1 388 -2 1 871 4129 46 25 2 chr5 37607278 37608180 -114929079 + RLTR10-int LTR ERVK 3 998 -989 1 871 329 326 13 13 chr5 37608225 37608374 -114928885 + RLTR10-int LTR ERVK 1446 1594 -5987 1 871 8507 19 5 0 chr5 37608456 37609446 -114927813 + RLTR10-int LTR ERVK 990 1984 -3 1 871 3195 26 2 85 chr5 37609448 37609871 -114927388 + RLTR10 LTR ERVK 1 388 -2 1 871 214 173 27 0 chr5 37609998 37610073 -114927186 + T-rich Low_complexity Low_complexity 2 78 0 1 871 307 345 53 20 chr5 37610302 37610453 -114926806 + MIRb SINE MIR 47 202 -66 1 871 186 43 0 0 chr5 37610485 37610508 -114926751 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 871 265 358 37 7 chr5 37611556 37611691 -114925568 - MLT1L LTR MaLR -129 481 343 1 871 209 262 32 32 chr5 37613346 37613409 -114923850 - MIRb SINE MIR -81 187 125 1 871 294 284 165 59 chr5 37613576 37613859 -114923400 + MER74A LTR ERVL 299 614 -8 1 871 1160 116 16 11 chr5 37614470 37614653 -114922606 - B2_Mm2 SINE B2 -10 185 2 1 871 1126 243 111 24 chr5 37615480 37615821 -114921438 - RMER5 LTR ERV1 -12 522 152 1 871 186 294 182 16 chr5 37617001 37617243 -114920016 - L2 LINE L2 -466 2953 2672 1 871 323 236 29 0 chr5 37617279 37617419 -114919840 + CT-rich Low_complexity Low_complexity 3 146 0 1 871 501 246 8 53 chr5 37617425 37617558 -114919701 - B1F SINE Alu -7 142 16 1 872 200 97 0 31 chr5 37617924 37617956 -114919303 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 1 872 186 244 0 0 chr5 37618017 37618058 -114919201 - L3 LINE CR1 -3 4486 4446 1 872 184 233 23 23 chr5 37618157 37618245 -114919014 + (TGAG)n Simple_repeat Simple_repeat 4 91 0 1 872 405 307 46 20 chr5 37618554 37618707 -114918552 - L1MEd LINE L1 -5052 1067 911 1 872 209 200 0 0 chr5 37618751 37618801 -114918458 + (CAGA)n Simple_repeat Simple_repeat 4 53 0 1 872 432 0 0 0 chr5 37619423 37619471 -114917788 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 872 196 245 122 47 chr5 37620694 37620801 -114916458 + MIRc SINE MIR 26 140 -128 1 872 533 311 142 31 chr5 37621981 37622402 -114914857 - L1MB3 LINE L1 -3 6180 5713 1 872 535 205 148 8 chr5 37623350 37623478 -114913781 + B1_Mur1 SINE Alu 3 148 -1 1 872 198 0 0 0 chr5 37623497 37623519 -114913740 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 872 525 224 103 14 chr5 37625018 37625163 -114912096 + ID_B1 SINE B4 56 213 -11 1 872 549 0 0 0 chr5 37625163 37625224 -114912035 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 1 872 338 250 35 61 chr5 37625231 37625346 -114911913 + PB1D10 SINE Alu 1 112 -5 1 872 675 219 12 4 chr5 37625583 37625840 -114911419 + CT-rich Low_complexity Low_complexity 1 259 0 1 872 294 245 39 48 chr5 37626009 37626112 -114911147 - B1_Mus1 SINE Alu -5 112 11 1 872 667 271 84 23 chr5 37628492 37628707 -114908552 - MLT1D LTR MaLR -70 435 208 1 872 732 238 0 7 chr5 37629069 37629217 -114908042 - B1_Mur1 SINE Alu -1 148 2 1 872 298 307 65 98 chr5 37629956 37630140 -114907119 + MIR SINE MIR 73 250 -12 1 872 621 40 0 0 chr5 37630260 37630336 -114906923 + (TTTC)n Simple_repeat Simple_repeat 4 79 0 1 872 1114 94 0 12 chr5 37630338 37630510 -114906749 + (TCCC)n Simple_repeat Simple_repeat 4 173 0 1 872 472 273 95 11 chr5 37630510 37630699 -114906560 - B3 SINE B2 -10 206 2 1 872 639 300 19 28 chr5 37630734 37630766 -114906493 - B3 SINE B2 -1 215 184 1 872 327 25 0 0 chr5 37630766 37630806 -114906453 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 872 723 290 6 17 chr5 37630806 37630989 -114906270 - B3A SINE B2 -33 183 2 1 872 707 211 42 7 chr5 37631137 37631280 -114905979 - B1_Mur1 SINE Alu -1 148 1 1 872 200 240 20 0 chr5 37632832 37632882 -114904377 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 872 23 68 0 0 chr5 37633228 37633272 -114903987 + GC_rich Low_complexity Low_complexity 1 44 0 1 872 226 189 38 0 chr5 37635882 37635935 -114901324 + MIRc SINE MIR 103 157 -111 1 872 215 152 0 21 chr5 37638434 37638481 -114898778 + G-rich Low_complexity Low_complexity 2 47 0 1 872 251 254 0 0 chr5 37640696 37640759 -114896500 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 872 387 280 37 0 chr5 37641319 37641426 -114895833 - B1F SINE Alu -5 144 34 1 872 718 278 74 88 chr5 37643375 37643671 -114893588 + B4A SINE B4 1 292 0 1 872 232 349 0 0 chr5 37644459 37644522 -114892737 - tRNA-Ala-GCY_ tRNA tRNA -10 65 3 1 872 306 50 0 0 chr5 37644785 37644825 -114892434 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 872 640 203 26 45 chr5 37644971 37645126 -114892133 - MTD LTR MaLR 0 419 268 1 872 856 280 38 42 chr5 37645150 37645437 -114891822 - MTD LTR MaLR -124 295 10 1 872 265 305 145 0 chr5 37646055 37646186 -114891073 - L2 LINE L2 -541 2878 2729 1 872 230 310 0 45 chr5 37646512 37646600 -114890659 + MLT1C LTR MaLR 366 449 -18 1 872 296 138 41 31 chr5 37647943 37648040 -114889219 + (TCTCTG)n Simple_repeat Simple_repeat 6 103 0 1 872 266 244 59 25 chr5 37649554 37649672 -114887587 + CT-rich Low_complexity Low_complexity 5 126 0 1 872 180 306 129 0 chr5 37649700 37649762 -114887497 - L2b LINE L2 -7 3368 3299 1 872 218 281 18 0 chr5 37651122 37651179 -114886080 - B4 SINE B4 -222 70 13 1 872 352 109 0 0 chr5 37651187 37651242 -114886017 - HAL1-3A_ME LINE L1 -828 2030 1976 1 872 987 281 17 17 chr5 37651267 37651557 -114885702 - B4 SINE B4 -2 290 1 1 872 217 0 61 0 chr5 37652228 37652261 -114884998 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 872 279 66 82 0 chr5 37652256 37652317 -114884942 + (CAAAC)n Simple_repeat Simple_repeat 3 68 0 1 872 811 254 103 27 chr5 37652378 37652641 -114884618 + B4 SINE B4 9 291 -1 1 872 495 0 0 0 chr5 37652661 37652716 -114884543 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 872 315 152 19 28 chr5 37652719 37652827 -114884432 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 1 872 201 178 0 0 chr5 37653531 37653576 -114883683 + (CCCA)n Simple_repeat Simple_repeat 2 46 0 1 872 220 268 0 18 chr5 37653584 37653641 -114883618 + (TCCA)n Simple_repeat Simple_repeat 2 57 0 2 872 526 63 12 12 chr5 37653657 37653737 -114883522 + (TCCC)n Simple_repeat Simple_repeat 3 82 0 2 872 1447 228 72 35 chr5 37653749 37654153 -114883106 + MTD LTR MaLR 1 419 0 2 872 1293 199 51 38 chr5 37655661 37655794 -114881465 - ORR1D1 LTR MaLR -61 313 177 2 872 1029 150 0 0 chr5 37655794 37655974 -114881285 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 872 1293 199 51 38 chr5 37655974 37656133 -114881126 - ORR1D1 LTR MaLR -198 176 17 2 872 1575 36 0 0 chr5 37656135 37656327 -114880932 - B2_Mm1a SINE B2 0 193 2 2 872 231 208 19 0 chr5 37656897 37656950 -114880309 + GA-rich Low_complexity Low_complexity 3 56 0 2 872 534 16 0 0 chr5 37658143 37658206 -114879053 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 872 307 292 116 20 chr5 37658224 37658371 -114878888 - MLT1B LTR MaLR -92 298 138 2 872 4298 200 55 8 chr5 37658372 37659307 -114877952 - Lx9 LINE L1 -8 7636 6658 2 872 492 287 70 0 chr5 37659310 37659467 -114877792 - MLT1B LTR MaLR -220 170 3 2 872 333 68 0 0 chr5 37659822 37659866 -114877393 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2 872 414 0 0 0 chr5 37660976 37661022 -114876237 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 872 397 290 39 88 chr5 37662306 37662510 -114874749 - HAL1-2a_MD LINE L1 -509 2515 2322 2 872 1319 190 111 26 chr5 37662513 37662581 -114874678 - ORR1D1 LTR MaLR -4 370 302 2 872 2194 142 5 21 chr5 37662581 37662954 -114874305 - ORR1B2 LTR MaLR 0 367 1 2 872 1319 190 111 26 chr5 37662954 37663226 -114874033 - ORR1D1 LTR MaLR -73 301 1 2 872 556 181 24 57 chr5 37663227 37663350 -114873909 - ORR1D1-int LTR MaLR -1 1369 1251 2 872 2725 229 34 8 chr5 37663346 37663988 -114873271 - ORR1D1-int LTR MaLR -711 659 1 2 872 1168 216 113 12 chr5 37663991 37664328 -114872931 - ORR1D1 LTR MaLR -3 371 1 2 872 342 305 33 13 chr5 37664346 37664499 -114872760 - HAL1-2a_MD LINE L1 -524 2500 2345 2 872 188 277 15 15 chr5 37668140 37668206 -114869053 + MIR SINE MIR 141 206 -56 2 872 1074 148 110 29 chr5 37668613 37668756 -114868503 + URR1A DNA MER1_type 1 166 -60 2 872 2088 108 6 58 chr5 37668756 37669101 -114868158 - ORR1A2 LTR MaLR 0 327 1 2 872 1074 148 110 29 chr5 37669101 37669166 -114868093 + URR1A DNA MER1_type 167 226 0 2 872 289 272 20 61 chr5 37669690 37669788 -114867471 - B4 SINE B4 -198 94 1 2 872 245 146 0 0 chr5 37669789 37669830 -114867429 - MT2A LTR ERVL 0 533 493 2 872 566 96 24 54 chr5 37669842 37670008 -114867251 + (TA)n Simple_repeat Simple_repeat 1 161 0 2 872 206 222 15 45 chr5 37670258 37670324 -114866935 + CT-rich Low_complexity Low_complexity 1 64 0 2 872 216 308 82 65 chr5 37672105 37672289 -114864970 + MIRc SINE MIR 3 189 -79 2 872 360 0 0 0 chr5 37673720 37673760 -114863499 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 872 214 264 0 0 chr5 37674475 37674528 -114862731 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 872 314 267 0 13 chr5 37674528 37674604 -114862655 - RSINE1 SINE B4 0 165 91 2 872 546 242 34 0 chr5 37674660 37674809 -114862450 - B3 SINE B2 0 216 63 2 872 959 258 12 12 chr5 37674822 37675069 -114862190 - B4A SINE B4 -44 248 2 2 872 225 181 39 0 chr5 37675689 37675757 -114861502 - B3 SINE B2 -120 75 1 2 872 282 95 0 0 chr5 37676390 37676432 -114860827 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 872 423 0 0 0 chr5 37676436 37676483 -114860776 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 872 252 0 0 0 chr5 37676483 37676510 -114860749 + (GA)n Simple_repeat Simple_repeat 2 29 0 2 872 22 35 0 0 chr5 37676615 37676644 -114860615 + AT_rich Low_complexity Low_complexity 1 29 0 2 872 561 229 15 50 chr5 37676766 37676947 -114860312 - B3A SINE B2 -1 215 46 2 872 282 56 0 0 chr5 37676947 37676983 -114860276 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 872 521 216 32 8 chr5 37677013 37677139 -114860120 - RSINE1 SINE B4 -36 129 1 2 872 412 270 22 33 chr5 37678488 37678668 -114858591 + (TATG)n Simple_repeat Simple_repeat 1 178 0 2 872 359 265 36 30 chr5 37678579 37678746 -114858513 + (TATATG)n Simple_repeat Simple_repeat 4 171 0 2 872 439 178 20 0 chr5 37678803 37678904 -114858355 + (TA)n Simple_repeat Simple_repeat 2 104 0 2 872 253 299 91 0 chr5 37680924 37681001 -114856258 - MER58B DNA MER1_type -242 99 16 2 872 285 29 0 0 chr5 37681697 37681731 -114855528 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 2 872 220 297 109 0 chr5 37681946 37682047 -114855212 + MIRc SINE MIR 53 164 -104 2 872 234 91 0 0 chr5 37684299 37684332 -114852927 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 2 872 739 188 30 0 chr5 37684336 37684469 -114852790 - B1_Mus2 SINE Alu -7 140 4 2 872 1424 251 17 64 chr5 37684473 37684882 -114852377 + MTC-int LTR MaLR 634 1257 -706 2 872 311 213 0 14 chr5 37684883 37685026 -114852233 + CT-rich Low_complexity Low_complexity 1 140 0 2 872 258 32 0 0 chr5 37685108 37685139 -114852120 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 872 3850 280 45 70 chr5 37685148 37686639 -114850620 - Lx5 LINE L1 -9 7041 5588 2 872 258 180 111 32 chr5 37686648 37686711 -114850548 + RLTR26 LTR ERVK 14 81 -779 2 872 3278 155 92 158 chr5 37686737 37687019 -114850240 + RMER19B LTR ERVK 1 242 -660 2 872 207 0 0 0 chr5 37687019 37687042 -114850217 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 2 872 3278 155 92 158 chr5 37687042 37687217 -114850042 + RMER19B LTR ERVK 243 434 -468 2 872 423 0 0 0 chr5 37687217 37687264 -114849995 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 872 3278 155 92 158 chr5 37687264 37687756 -114849503 + RMER19B LTR ERVK 435 888 -14 2 872 793 268 26 71 chr5 37687770 37688094 -114849165 + RLTR26 LTR ERVK 98 451 -191 2 872 840 225 16 11 chr5 37688272 37688456 -114848803 - L1_Mur3 LINE L1 -276 5604 5420 2 872 797 170 49 25 chr5 37688624 37688787 -114848472 + B2_Mm2 SINE B2 23 189 -6 2 872 461 229 70 19 chr5 37689074 37689230 -114848029 + MTC-int LTR MaLR 1070 1233 -25 2 872 1951 163 54 0 chr5 37689226 37689575 -114847684 + MTD LTR MaLR 44 411 -8 2 872 843 20 0 0 chr5 37690049 37690150 -114847109 + (CA)n Simple_repeat Simple_repeat 2 102 0 2 872 314 232 11 57 chr5 37690268 37690386 -114846873 + MER20 DNA MER1_type 54 166 -53 2 872 224 30 30 0 chr5 37693494 37693527 -114843732 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 872 406 260 55 39 chr5 37693528 37693656 -114843603 - RSINE1 SINE B4 -22 143 14 2 872 1032 146 0 0 chr5 37693701 37693908 -114843351 + (TA)n Simple_repeat Simple_repeat 1 207 0 2 872 227 228 35 0 chr5 37695421 37695478 -114841781 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 2 872 207 167 45 0 chr5 37695498 37695564 -114841695 + (TCCA)n Simple_repeat Simple_repeat 1 69 0 2 872 241 256 56 0 chr5 37695586 37695676 -114841583 + (TCCA)n Simple_repeat Simple_repeat 2 96 0 2 872 524 329 17 5 chr5 37695918 37696155 -114841104 - L1MA4 LINE L1 -353 5938 5696 2 872 284 0 0 27 chr5 37696155 37696192 -114841067 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 872 378 0 0 0 chr5 37696192 37696233 -114841026 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 872 1339 221 109 23 chr5 37696253 37696637 -114840622 + MTD LTR MaLR 1 417 -2 2 872 547 319 35 23 chr5 37697961 37698134 -114839125 + B4 SINE B4 118 292 0 2 872 480 140 0 0 chr5 37698154 37698261 -114838998 + (CCA)n Simple_repeat Simple_repeat 1 107 0 2 872 702 0 0 0 chr5 37700121 37700199 -114837060 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 872 264 336 54 31 chr5 37700833 37701030 -114836229 + MIRc SINE MIR 25 227 -41 2 872 227 156 22 22 chr5 37701690 37701736 -114835523 - L2b LINE L2 -1 3374 3329 2 872 184 262 143 48 chr5 37701822 37701906 -114835353 - MIRb SINE MIR -140 128 37 2 872 385 322 28 28 chr5 37702462 37702641 -114834618 + MLT1B LTR MaLR 170 348 -42 2 872 311 252 157 14 chr5 37706095 37706397 -114830862 + L1MEg LINE L1 897 1221 -4979 2 872 1282 261 68 48 chr5 37707196 37707550 -114829709 + MTEa LTR MaLR 11 371 -8 2 872 292 330 0 0 chr5 37708460 37708551 -114828708 + (TTCA)n Simple_repeat Simple_repeat 4 94 0 2 872 450 114 0 0 chr5 37708556 37708626 -114828633 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 2 872 441 0 0 0 chr5 37710419 37710468 -114826791 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 872 192 328 16 0 chr5 37710700 37710764 -114826495 + MER5B DNA MER1_type 110 174 -4 2 872 476 224 37 81 chr5 37710858 37710994 -114826265 + B3A SINE B2 6 135 -63 2 872 1002 235 0 0 chr5 37711009 37711205 -114826054 + B3 SINE B2 5 200 -16 2 872 567 0 0 0 chr5 37711205 37711268 -114825991 + (AATAG)n Simple_repeat Simple_repeat 1 63 0 2 872 263 152 51 0 chr5 37711283 37711362 -114825897 + (TGGA)n Simple_repeat Simple_repeat 4 86 0 2 872 878 235 119 4 chr5 37712397 37712632 -114824627 + MTEa LTR MaLR 113 374 -5 2 872 988 200 78 5 chr5 37712639 37712845 -114824414 + ORR1D2 LTR MaLR 15 235 -135 2 872 21 36 0 0 chr5 37713514 37713542 -114823717 + AT_rich Low_complexity Low_complexity 1 28 0 2 872 294 143 0 0 chr5 37713545 37713594 -114823665 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 872 412 275 33 26 chr5 37713647 37713800 -114823459 + RSINE1 SINE B4 3 156 -9 2 872 408 282 78 46 chr5 37714095 37714314 -114822945 + LTR79 LTR ERVL 135 360 -167 2 872 486 33 0 0 chr5 37714377 37714437 -114822822 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 872 244 222 0 77 chr5 37715190 37715268 -114821991 + CT-rich Low_complexity Low_complexity 3 74 0 2 872 1556 194 35 19 chr5 37716711 37717027 -114820232 + ORR1D1 LTR MaLR 54 374 0 2 872 215 261 172 0 chr5 37717144 37717243 -114820016 + MIR SINE MIR 45 165 -103 2 872 187 322 58 25 chr5 37717415 37717536 -114819723 + MIR SINE MIR 13 137 -125 2 872 237 108 0 0 chr5 37718712 37718749 -114818510 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 872 333 260 19 9 chr5 37719922 37720027 -114817232 + (TGGA)n Simple_repeat Simple_repeat 3 108 0 2 872 218 219 27 0 chr5 37720030 37720103 -114817156 + (TATG)n Simple_repeat Simple_repeat 1 75 0 2 872 251 330 10 0 chr5 37720132 37720229 -114817030 + (TGGA)n Simple_repeat Simple_repeat 3 100 0 2 872 815 247 125 8 chr5 37720256 37720614 -114816645 - MTD LTR MaLR -14 405 1 2 872 359 348 6 17 chr5 37720637 37720818 -114816441 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 2 872 249 278 0 0 chr5 37720818 37720908 -114816351 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 872 246 236 97 43 chr5 37721643 37721736 -114815523 - PB1D10 SINE Alu -17 100 3 3 872 191 324 14 0 chr5 37722800 37722874 -114814385 - MIRc SINE MIR -124 144 70 3 872 281 362 25 38 chr5 37723169 37723327 -114813932 + MIRb SINE MIR 4 159 -109 3 872 263 254 0 14 chr5 37723938 37724010 -114813249 + L1ME2 LINE L1 6070 6140 -24 3 872 522 214 168 12 chr5 37724595 37724756 -114812503 + MTE2a LTR MaLR 194 379 0 3 872 509 341 102 3 chr5 37725096 37725399 -114811860 - MER82 DNA MER2_type -313 340 8 3 872 783 277 124 16 chr5 37725424 37725681 -114811578 + B4 SINE B4 8 292 0 3 872 428 358 15 0 chr5 37725743 37725880 -114811379 + RSINE1 SINE B4 2 140 -25 3 872 363 44 0 0 chr5 37725912 37725957 -114811302 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 872 441 129 0 0 chr5 37725957 37726050 -114811209 + (GA)n Simple_repeat Simple_repeat 1 93 0 3 872 227 288 166 53 chr5 37726187 37726356 -114810903 - L2a LINE L2 -270 3156 2969 3 872 315 312 185 17 chr5 37726462 37726700 -114810559 + HAL1 LINE L1 807 1084 -1423 3 872 393 22 0 0 chr5 37726758 37726804 -114810455 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 872 227 213 133 0 chr5 37727161 37727236 -114810023 + MIR SINE MIR 60 144 -118 3 872 1181 231 43 120 chr5 37730645 37731038 -114806221 + MTE2a LTR MaLR 3 365 -14 3 872 206 245 189 9 chr5 37731798 37731909 -114805350 + MIRb SINE MIR 32 162 -106 3 872 1991 113 20 7 chr5 37732085 37732379 -114804880 - ORR1B2 LTR MaLR -11 356 59 3 872 526 278 117 90 chr5 37732768 37733135 -114804124 + Charlie1b DNA MER1_type 147 523 0 3 872 214 290 0 42 chr5 37733274 37733346 -114803913 + GA-rich Low_complexity Low_complexity 3 71 0 3 872 1699 171 148 56 chr5 37733650 37733874 -114803385 - MTC LTR MaLR -5 416 208 3 872 1149 68 7 0 chr5 37733874 37734021 -114803238 - B1_Mus1 SINE Alu 0 148 1 3 872 1699 171 148 56 chr5 37734021 37734174 -114803085 - MTC LTR MaLR -214 207 4 3 872 340 318 87 10 chr5 37734756 37735044 -114802215 + L2a LINE L2 2828 3153 -222 3 872 625 205 34 0 chr5 37735074 37735191 -114802068 + ID_B1 SINE B4 96 216 -8 3 872 246 316 71 29 chr5 37735080 37735220 -114802039 - YREP_Mm Unknown Unknown -1516 296 151 3 872 961 289 76 32 chr5 37735278 37735452 -114801807 + MTE2a LTR MaLR 2 186 -193 3 872 213 39 0 0 chr5 37735452 37735478 -114801781 + (CAG)n Simple_repeat Simple_repeat 2 27 0 3 872 961 289 76 32 chr5 37735478 37735646 -114801613 + MTE2a LTR MaLR 187 359 -20 3 872 195 313 29 57 chr5 37736063 37736168 -114801091 - MIRb SINE MIR -28 240 139 3 872 1168 249 91 52 chr5 37736871 37736936 -114800323 - RMER5 LTR ERV1 -93 441 368 3 872 234 0 0 0 chr5 37736936 37736962 -114800297 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 3 872 1168 249 91 52 chr5 37736962 37737303 -114799956 - RMER5 LTR ERV1 -167 367 19 3 872 300 303 30 10 chr5 37737360 37737460 -114799799 + MLT-int LTR MaLR 259 360 -1375 3 872 296 224 0 0 chr5 37737635 37737693 -114799566 + MLT1A1 LTR MaLR 349 406 -2 3 872 903 131 12 12 chr5 37737989 37738159 -114799100 + CT-rich Low_complexity Low_complexity 2 171 0 3 872 405 252 65 9 chr5 37738311 37738419 -114798840 - MIRc SINE MIR -134 134 21 3 872 390 21 0 0 chr5 37739003 37739050 -114798209 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 872 532 265 188 5 chr5 37739052 37739281 -114797978 - B4A SINE B4 -20 272 2 3 872 315 0 0 0 chr5 37739315 37739350 -114797909 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 872 1047 59 0 0 chr5 37741767 37741902 -114795357 + (TCCCC)n Simple_repeat Simple_repeat 2 136 0 3 872 242 257 102 10 chr5 37742009 37742109 -114795150 - MIR3 SINE MIR -64 198 90 3 872 301 204 0 0 chr5 37742585 37742638 -114794621 + MTEa LTR MaLR 1 53 -326 3 872 1058 233 194 44 chr5 37742638 37742957 -114794302 - ORR1D2 LTR MaLR -3 367 1 3 872 416 262 37 9 chr5 37742957 37743064 -114794195 + MTEa LTR MaLR 50 159 -220 3 872 308 182 0 25 chr5 37743260 37743339 -114793920 + GA-rich Low_complexity Low_complexity 2 78 0 3 872 239 275 31 6 chr5 37743999 37744077 -114793182 + MIR SINE MIR 85 169 -99 3 872 423 0 0 0 chr5 37744821 37744868 -114792391 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 872 522 75 0 0 chr5 37744868 37744948 -114792311 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 872 303 146 0 0 chr5 37744999 37745054 -114792205 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 3 872 205 353 84 13 chr5 37745915 37746070 -114791189 - MIR3 SINE MIR -27 181 16 3 872 1100 274 96 75 chr5 37746087 37746167 -114791092 - MT2A LTR ERVL -2 531 434 3 872 1316 179 5 0 chr5 37746167 37746391 -114790868 - URR1A DNA MER1_type 0 226 2 3 872 1100 274 96 75 chr5 37746391 37746830 -114790429 - MT2A LTR ERVL -100 433 1 3 872 710 186 25 0 chr5 37747913 37748031 -114789228 + B3 SINE B2 10 130 -86 3 872 406 266 0 23 chr5 37748151 37748324 -114788935 + (TATG)n Simple_repeat Simple_repeat 2 170 0 3 872 432 235 87 35 chr5 37748357 37748529 -114788730 - L1MB5 LINE L1 -67 6107 5927 3 873 231 293 107 0 chr5 37748932 37749007 -114788252 + ID4 SINE ID 1 83 0 3 873 354 300 167 9 chr5 37749064 37749438 -114787821 - L1MA8 LINE L1 -3 6297 5836 3 873 911 204 191 148 chr5 37749438 37749795 -114787464 + ORR1D1 LTR MaLR 1 372 -2 3 873 354 283 147 0 chr5 37749795 37749845 -114787414 - L1MA8 LINE L1 -456 5835 5784 3 873 10318 175 34 15 chr5 37750668 37753102 -114784157 + Lx6 LINE L1 3783 6271 -1189 3 873 1363 275 61 26 chr5 37753166 37753724 -114783535 + Lx6 LINE L1 6484 7430 -30 3 873 251 250 0 15 chr5 37753777 37753842 -114783417 - RMER1C Other Other -19 1323 1260 3 873 226 186 105 95 chr5 37753842 37753872 -114783387 - Lx8 LINE L1 -1 7472 7377 3 873 760 265 90 13 chr5 37753899 37754132 -114783127 - Lx8 LINE L1 -165 7308 7058 3 873 480 117 0 0 chr5 37754169 37754246 -114783013 + (TC)n Simple_repeat Simple_repeat 1 77 0 3 873 225 65 0 0 chr5 37754246 37754277 -114782982 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 873 752 246 146 18 chr5 37754280 37754499 -114782760 - B4 SINE B4 -39 253 7 3 873 191 340 51 10 chr5 37755075 37755173 -114782086 - L2b LINE L2 -222 3153 3052 3 873 846 234 24 47 chr5 37756412 37756623 -114780636 - B3 SINE B2 -10 206 1 3 873 378 0 0 0 chr5 37756700 37756742 -114780517 + (CAGT)n Simple_repeat Simple_repeat 2 43 0 3 873 261 139 0 0 chr5 37756742 37756785 -114780474 + (CCTG)n Simple_repeat Simple_repeat 2 44 0 3 873 348 221 8 24 chr5 37756796 37756921 -114780338 + CT-rich Low_complexity Low_complexity 4 126 0 3 873 641 268 31 25 chr5 37758071 37758271 -114778988 - ID_B1 SINE B4 -8 284 84 3 873 478 101 10 20 chr5 37758529 37758630 -114778629 + (CAGA)n Simple_repeat Simple_repeat 3 102 0 3 873 809 299 25 13 chr5 37761374 37761611 -114775648 - ORR1E LTR MaLR -117 242 3 3 873 226 149 64 0 chr5 37761618 37761665 -114775594 + GA-rich Low_complexity Low_complexity 3 52 0 3 873 773 167 0 5 chr5 37762159 37762370 -114774889 + (TCCA)n Simple_repeat Simple_repeat 1 210 0 3 873 386 247 21 11 chr5 37762370 37762464 -114774795 + (CCCA)n Simple_repeat Simple_repeat 1 95 0 3 873 335 266 11 11 chr5 37762476 37762651 -114774608 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 3 873 471 48 0 0 chr5 37762682 37762744 -114774515 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 873 347 324 18 6 chr5 37762757 37762928 -114774331 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 3 873 247 379 23 17 chr5 37762933 37763110 -114774149 + (CCTA)n Simple_repeat Simple_repeat 1 178 0 3 873 290 353 56 28 chr5 37763553 37763696 -114773563 - RMER15 LTR ERVL -154 421 275 3 873 308 210 126 132 chr5 37763690 37763849 -114773410 - RMER15 LTR ERVL -414 161 4 3 873 865 93 13 0 chr5 37764374 37764525 -114772734 + (GA)n Simple_repeat Simple_repeat 2 154 0 3 873 193 286 21 42 chr5 37764870 37764965 -114772294 + L2 LINE L2 821 913 -2506 3 873 369 269 61 15 chr5 37765484 37765616 -114771643 + L1MA6 LINE L1 6132 6269 -31 3 873 1475 201 73 67 chr5 37765736 37766093 -114771166 - ORR1E LTR MaLR 0 359 1 3 873 1330 262 30 68 chr5 37766093 37766451 -114770808 - MTE2a LTR MaLR -11 368 22 3 873 506 294 36 14 chr5 37767176 37767314 -114769945 + ID_B1 SINE B4 84 224 0 3 873 575 263 68 126 chr5 37767319 37767541 -114769718 + B3 SINE B2 6 214 -2 3 873 329 271 179 0 chr5 37767846 37767997 -114769262 - MLT1E1 LTR MaLR -71 583 406 3 873 886 232 141 4 chr5 37768171 37768413 -114768846 + B4A SINE B4 2 276 -16 3 873 387 0 0 0 chr5 37768429 37768472 -114768787 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 873 396 0 0 0 chr5 37768965 37769009 -114768250 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 873 293 0 27 0 chr5 37769160 37769197 -114768062 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 873 201 39 0 0 chr5 37769253 37769279 -114767980 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 873 180 338 29 0 chr5 37769847 37769915 -114767344 + MIRb SINE MIR 29 98 -170 3 873 219 103 0 0 chr5 37772740 37772779 -114764480 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 873 573 298 6 55 chr5 37772803 37772984 -114764275 - B4A SINE B4 -3 289 118 3 873 420 20 0 0 chr5 37773788 37773837 -114763422 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 873 228 194 194 0 chr5 37773894 37773956 -114763303 - MLT1A0 LTR MaLR -334 74 1 3 873 345 244 122 0 chr5 37774571 37774686 -114762573 + MER117 DNA MER1_type 27 155 -42 3 873 1132 201 0 23 chr5 37775488 37775702 -114761557 - B3 SINE B2 0 216 8 3 873 228 111 0 0 chr5 37775704 37775740 -114761519 + (TC)n Simple_repeat Simple_repeat 1 36 0 3 873 1184 278 78 42 chr5 37775746 37775992 -114761267 - Lx8 LINE L1 -154 7319 7080 3 873 2686 59 3 56 chr5 37775992 37776369 -114760890 - L1_Mus1 LINE L1 0 6567 6211 3 873 1184 278 78 42 chr5 37776369 37776599 -114760660 - Lx8 LINE L1 -394 7079 6826 3 873 294 283 106 38 chr5 37777251 37777383 -114759876 - MIR SINE MIR -26 236 96 3 873 204 40 0 0 chr5 37777416 37777441 -114759818 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 873 222 62 0 0 chr5 37777486 37777518 -114759741 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 873 358 250 0 0 chr5 37777529 37777601 -114759658 - ID4 SINE ID -11 72 1 4 873 464 277 0 10 chr5 37777631 37777733 -114759526 - PB1D10 SINE Alu -5 112 12 4 873 377 242 101 0 chr5 37778804 37778903 -114758356 + PB1D7 SINE Alu 1 109 -11 4 873 885 235 109 19 chr5 37778914 37779179 -114758080 + B4A SINE B4 2 290 -2 4 873 492 209 52 43 chr5 37779277 37779392 -114757867 + PB1D10 SINE Alu 2 117 0 4 873 318 154 25 13 chr5 37780262 37780341 -114756918 + (TG)n Simple_repeat Simple_repeat 2 81 0 4 873 593 239 0 6 chr5 37780352 37780533 -114756726 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 873 816 245 32 114 chr5 37780538 37780819 -114756440 - B4A SINE B4 -1 291 34 4 873 231 36 0 0 chr5 37782004 37782032 -114755227 + (TGGGGG)n Simple_repeat Simple_repeat 6 33 0 4 873 506 340 123 17 chr5 37782104 37782471 -114754788 - MLT1C LTR MaLR -10 457 58 4 873 195 42 0 0 chr5 37782471 37782495 -114754764 + (CGGTG)n Simple_repeat Simple_repeat 5 28 0 4 873 506 340 123 17 chr5 37782495 37782540 -114754719 - MLT1C LTR MaLR -410 57 2 4 873 1833 134 30 57 chr5 37782611 37782911 -114754348 - Lx4A LINE L1 0 7058 6767 4 873 258 294 142 51 chr5 37783888 37784085 -114753174 + LTR16A1 LTR ERVL 240 454 -2 4 873 378 0 0 0 chr5 37784914 37784956 -114752303 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 873 567 0 0 0 chr5 37785293 37785356 -114751903 + (GA)n Simple_repeat Simple_repeat 1 63 0 4 873 418 192 0 37 chr5 37785418 37785499 -114751760 - B4 SINE B4 -3 289 212 4 873 841 34 55 0 chr5 37785700 37785846 -114751413 + (TG)n Simple_repeat Simple_repeat 1 154 0 4 873 828 246 79 50 chr5 37785866 37786144 -114751115 - B4A SINE B4 0 292 7 4 873 193 379 48 0 chr5 37786422 37786525 -114750734 - MIR SINE MIR -120 142 35 4 873 192 40 0 0 chr5 37787346 37787371 -114749888 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 873 963 216 60 17 chr5 37787398 37787633 -114749626 - B4 SINE B4 -47 245 1 4 873 223 204 0 20 chr5 37788105 37788155 -114749104 + CT-rich Low_complexity Low_complexity 4 52 0 4 873 182 118 0 29 chr5 37788321 37788356 -114748903 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 4 873 23 33 0 0 chr5 37788572 37788602 -114748657 + AT_rich Low_complexity Low_complexity 1 30 0 4 873 840 208 37 16 chr5 37788606 37788797 -114748462 - B3 SINE B2 -18 198 4 4 873 230 256 87 65 chr5 37788827 37788965 -114748294 - HAL1 LINE L1 -1616 891 751 4 873 6098 155 57 28 chr5 37789528 37790632 -114746627 - Lx5 LINE L1 -3 7047 5912 4 873 3553 302 62 42 chr5 37790634 37790897 -114746362 - L1_Mur3 LINE L1 -1712 4168 3932 4 873 1168 88 0 0 chr5 37790897 37791044 -114746215 - B1_Mus2 SINE Alu 0 147 1 4 873 3553 302 62 42 chr5 37791044 37791227 -114746032 - L1_Mur3 LINE L1 -1949 3931 3742 4 873 180 0 0 0 chr5 37791227 37791247 -114746012 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 4 873 3553 302 62 42 chr5 37791247 37792982 -114744277 - L1_Mur3 LINE L1 -2139 3741 1943 4 873 6637 118 35 81 chr5 37793002 37794191 -114743068 + ORR1A4-int LTR MaLR 830 1963 0 4 873 2224 98 3 81 chr5 37794191 37794548 -114742711 + ORR1A4 LTR MaLR 1 329 0 4 873 464 319 25 88 chr5 37794576 37795099 -114742160 - L1_Rod LINE L1 -3921 1926 1437 4 873 348 283 39 94 chr5 37795157 37795403 -114741856 - L1M4b LINE L1 -5133 1863 1483 4 873 558 79 0 0 chr5 37798254 37798330 -114738929 + (TTCC)n Simple_repeat Simple_repeat 2 77 0 4 873 207 122 73 0 chr5 37798425 37798466 -114738793 + (CAAAT)n Simple_repeat Simple_repeat 1 44 0 4 873 293 181 0 100 chr5 37798466 37798489 -114738770 + B4A SINE B4 71 85 -207 4 873 414 51 0 33 chr5 37798489 37798550 -114738709 + B1_Mus1 SINE Alu 2 60 -88 4 873 270 189 69 59 chr5 37798612 37798713 -114738546 + RLTR25B LTR ERVK 397 498 -530 4 873 772 75 0 28 chr5 37798656 37798752 -114738507 + B1_Mus2 SINE Alu 42 136 -11 4 873 378 0 0 0 chr5 37798752 37798794 -114738465 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 4 873 772 75 0 28 chr5 37798794 37798806 -114738453 + B1_Mus2 SINE Alu 137 147 0 4 873 241 200 58 70 chr5 37798979 37799065 -114738194 + LTR81B LTR ERV1? 272 356 -1037 4 873 374 273 106 20 chr5 37800365 37800563 -114736696 - L1MB3 LINE L1 -3 6180 5966 4 873 605 229 41 0 chr5 37801024 37801146 -114736113 + RSINE1 SINE B4 11 137 -28 4 873 773 266 31 15 chr5 37802189 37802384 -114734875 - B3A SINE B2 0 198 1 4 873 554 300 70 50 chr5 37802409 37802711 -114734548 - Lx7 LINE L1 -1 7472 7165 4 873 234 91 0 0 chr5 37802734 37802767 -114734492 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 4 873 4361 216 76 16 chr5 37802767 37803803 -114733456 - Lx5 LINE L1 -16 7034 5937 4 873 1162 90 6 33 chr5 37803799 37803982 -114733277 + Lx5 LINE L1 5745 5922 -1128 4 873 691 272 66 11 chr5 37804000 37804307 -114732952 - Lx7 LINE L1 -322 7151 6818 4 873 927 208 293 4 chr5 37804409 37804675 -114732584 - ORR1D1 LTR MaLR -30 344 2 4 873 336 346 18 109 chr5 37804805 37804888 -114732371 + L1MD LINE L1 3741 3810 -2336 4 873 279 0 0 0 chr5 37804888 37804919 -114732340 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 873 336 346 18 109 chr5 37804919 37805111 -114732148 + L1MD LINE L1 3811 3991 -2155 4 873 748 203 53 0 chr5 37805222 37805355 -114731904 + B1_Mur2 SINE Alu 1 140 -9 4 873 192 77 0 0 chr5 37806511 37806537 -114730722 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 873 189 0 0 0 chr5 37806655 37806676 -114730583 + (A)n Simple_repeat Simple_repeat 1 21 0 4 873 687 226 31 25 chr5 37807415 37807574 -114729685 - RSINE1 SINE B4 -3 162 3 4 873 461 212 172 26 chr5 37807599 37807715 -114729544 - B1_Mus2 SINE Alu -14 133 1 4 873 253 296 59 22 chr5 37807717 37807852 -114729407 - L1MC4a LINE L1 -2 7880 7741 4 873 398 244 35 0 chr5 37809309 37809395 -114727864 - B1F1 SINE Alu -58 91 3 4 873 237 350 110 0 chr5 37811234 37811334 -114725925 - Tigger5 DNA MER2_type -2287 119 9 4 873 22 35 0 0 chr5 37813022 37813051 -114724208 + AT_rich Low_complexity Low_complexity 1 29 0 4 873 1150 277 25 7 chr5 37813796 37814072 -114723187 + B4A SINE B4 5 285 -7 4 873 231 200 0 0 chr5 37815005 37815046 -114722213 + B3A SINE B2 2 42 -156 4 873 1716 155 131 3 chr5 37815046 37815382 -114721877 + ORR1C2 LTR MaLR 1 379 -5 4 873 608 214 48 0 chr5 37815373 37815499 -114721760 + B3A SINE B2 19 150 -48 4 873 261 98 0 0 chr5 37815501 37815542 -114721717 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 873 180 183 47 62 chr5 37816393 37816457 -114720802 - MIRc SINE MIR -84 184 122 4 873 282 29 0 0 chr5 37817447 37817482 -114719777 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 4 873 243 61 0 0 chr5 37817529 37817562 -114719697 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 873 182 377 18 36 chr5 37818254 37818364 -114718895 + MIR3 SINE MIR 62 169 -39 4 873 221 365 68 7 chr5 37820772 37820918 -114716341 + MIRb SINE MIR 21 175 -93 4 873 1967 166 3 18 chr5 37820941 37821279 -114715980 + ORR1B1 LTR MaLR 3 335 -59 4 873 309 265 0 0 chr5 37821442 37821574 -114715685 + (TATATG)n Simple_repeat Simple_repeat 6 137 0 4 873 640 164 23 34 chr5 37821586 37821763 -114715496 + (CATA)n Simple_repeat Simple_repeat 4 178 0 4 873 987 57 0 0 chr5 37821850 37821972 -114715287 + B1_Mus1 SINE Alu 22 143 -5 4 873 243 0 0 0 chr5 37821976 37822003 -114715256 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 873 313 306 64 9 chr5 37822006 37822115 -114715144 - MLT1B LTR MaLR -25 365 251 4 873 524 294 64 144 chr5 37822230 37822649 -114714610 - L1MEc LINE L1 -2531 3788 3416 4 873 1879 187 106 11 chr5 37822649 37823028 -114714231 + MTD LTR MaLR 5 419 0 4 873 342 294 64 144 chr5 37823028 37823276 -114713983 - L1MEc LINE L1 -2904 3415 3174 4 873 345 145 0 0 chr5 37823326 37823388 -114713871 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 873 422 315 197 30 chr5 37823452 37823920 -114713339 - L1MEc LINE L1 -5472 928 383 4 873 1145 290 34 41 chr5 37825044 37825512 -114711747 - Lx6 LINE L1 -52 7408 6944 4 873 477 0 0 0 chr5 37825929 37825982 -114711277 + (CAG)n Simple_repeat Simple_repeat 2 54 0 4 873 2965 48 74 3 chr5 37827362 37827739 -114709520 - MTB_Mm LTR MaLR -3 404 1 4 873 251 279 0 55 chr5 37828521 37828612 -114708647 - ORR1D2 LTR MaLR 0 370 285 4 873 279 79 0 0 chr5 37828643 37828681 -114708578 + (A)n Simple_repeat Simple_repeat 1 38 0 4 873 1537 222 81 8 chr5 37828760 37829141 -114708118 - MTD LTR MaLR -10 409 1 4 873 225 315 80 40 chr5 37829141 37829284 -114707975 + MIRm SINE MIR 51 203 -65 4 873 345 237 39 26 chr5 37829975 37830053 -114707206 - B1F1 SINE Alu -37 112 34 4 873 1144 198 15 10 chr5 37830075 37830279 -114706980 - B3 SINE B2 -11 205 1 4 873 231 375 62 0 chr5 37830687 37830815 -114706444 - LTR16A1 LTR ERVL -26 430 295 4 873 316 260 41 0 chr5 37831163 37831236 -114706023 - MTE2a LTR MaLR -22 357 282 4 873 1406 229 69 3 chr5 37831245 37831414 -114705845 - MTEa LTR MaLR -24 355 166 4 873 759 22 0 0 chr5 37831414 37831503 -114705756 + (TCCC)n Simple_repeat Simple_repeat 4 92 0 4 873 1406 229 69 3 chr5 37831503 37831666 -114705593 - MTEa LTR MaLR -214 165 2 4 873 488 182 0 0 chr5 37832255 37832332 -114704927 - Lx5 LINE L1 -246 6804 6728 4 873 243 269 72 54 chr5 37832332 37832476 -114704783 + MIRc SINE MIR 36 188 -88 4 873 385 336 45 45 chr5 37832584 37832827 -114704432 - HAL1 LINE L1 -1347 1160 918 4 873 198 0 0 0 chr5 37833040 37833062 -114704197 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 4 873 1242 100 0 0 chr5 37833172 37833352 -114703907 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 873 1095 139 0 0 chr5 37833357 37833537 -114703722 + (GGA)n Simple_repeat Simple_repeat 1 180 0 4 873 270 250 0 0 chr5 37833537 37833609 -114703650 + GA-rich Low_complexity Low_complexity 1 72 0 4 873 1853 134 35 16 chr5 37833814 37834133 -114703126 - RMER1A Other Other 0 1030 706 4 873 1292 257 35 3 chr5 37834203 37834492 -114702767 - RMER1B Other Other -768 298 1 5 873 1494 235 81 77 chr5 37834885 37835470 -114701789 + RLTR26 LTR ERVK 5 635 -7 5 873 518 271 70 44 chr5 37835924 37836152 -114701107 - RMER15 LTR ERVL -341 234 1 5 873 505 330 147 11 chr5 37836176 37836455 -114700804 - MER2 DNA MER2_type -20 325 9 5 873 568 266 25 31 chr5 37836455 37836614 -114700645 + RMER15 LTR ERVL 1 158 -417 5 873 719 292 141 8 chr5 37836615 37836877 -114700382 + RMER15 LTR ERVL 276 572 -3 5 873 508 330 99 17 chr5 37837648 37837950 -114699309 + ORR1E LTR MaLR 22 348 -11 5 873 680 179 0 7 chr5 37838645 37838797 -114698462 + GA-rich Low_complexity Low_complexity 2 152 0 5 873 460 296 37 60 chr5 37839585 37839801 -114697458 - MIRc SINE MIR -15 253 43 5 873 321 299 28 9 chr5 37840180 37840288 -114696971 + MIRc SINE MIR 98 207 -61 5 873 193 246 62 47 chr5 37840398 37840462 -114696797 - L2a LINE L2 -86 3340 3276 5 873 196 321 99 0 chr5 37840682 37840763 -114696496 + MIRb SINE MIR 64 152 -116 5 873 674 200 78 7 chr5 37840836 37841019 -114696240 - Lx3C LINE L1 0 7000 6803 5 873 495 279 52 0 chr5 37841021 37841157 -114696102 + B1F2 SINE Alu 1 143 -6 5 873 270 183 52 78 chr5 37841166 37841243 -114696016 + B4A SINE B4 192 266 -26 5 873 591 85 0 0 chr5 37841694 37841776 -114695483 + (TCCA)n Simple_repeat Simple_repeat 1 82 0 5 873 1303 271 41 16 chr5 37843766 37844134 -114693125 - MTE2b LTR MaLR 0 379 3 5 873 2294 184 87 5 chr5 37844145 37844581 -114692678 + Lx5 LINE L1 6568 7039 -11 5 873 405 0 0 0 chr5 37845042 37845087 -114692172 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 873 248 321 75 29 chr5 37846602 37846775 -114690484 + ORSL DNA Tip100 45 225 -50 5 873 416 298 109 26 chr5 37846775 37846968 -114690291 + MLT1C LTR MaLR 1 209 -258 5 873 1293 261 4 7 chr5 37847326 37847630 -114689629 + MTEa LTR MaLR 23 318 -61 5 873 561 322 17 6 chr5 37848083 37848261 -114688998 + MER2 DNA MER2_type 160 339 -6 5 873 1233 167 47 0 chr5 37848717 37848932 -114688327 - URR1B DNA MER1_type 0 225 1 5 873 29 60 0 0 chr5 37849012 37849062 -114688197 + AT_rich Low_complexity Low_complexity 1 50 0 5 873 336 237 2 18 chr5 37849074 37849152 -114688107 - PB1D9 SINE Alu -31 118 43 5 873 191 274 0 0 chr5 37849953 37850004 -114687255 + MIR SINE MIR 97 147 -61 5 873 247 318 23 137 chr5 37851421 37851444 -114685815 + RMER12 LTR ERVK 704 724 -598 5 873 470 260 251 12 chr5 37851444 37851615 -114685644 + B3 SINE B2 1 212 -4 5 873 247 318 23 137 chr5 37851615 37851766 -114685493 + RMER12 LTR ERVK 725 858 -464 5 873 275 214 28 28 chr5 37851766 37851838 -114685421 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 5 873 798 253 103 8 chr5 37851842 37852105 -114685154 - B4A SINE B4 -4 288 1 5 873 735 294 31 21 chr5 37853238 37853429 -114683830 - B4 SINE B4 -87 205 13 5 873 192 333 39 29 chr5 37855180 37855282 -114681977 - MIRb SINE MIR -6 262 160 5 873 1651 26 11 0 chr5 37856420 37856611 -114680648 + B2_Mm1a SINE B2 1 193 0 5 873 351 0 0 0 chr5 37857119 37857158 -114680101 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 5 873 333 0 0 0 chr5 37857162 37857199 -114680060 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 5 873 240 295 27 62 chr5 37858526 37858638 -114678621 + L1MB5 LINE L1 6056 6163 -11 5 873 1316 255 31 56 chr5 37859269 37859664 -114677595 + MTE2a LTR MaLR 22 417 -2 5 873 470 300 135 73 chr5 37860600 37861019 -114676240 + MLT1C LTR MaLR 6 460 -7 5 873 193 244 148 56 chr5 37861027 37861117 -114676142 - MIR SINE MIR -155 113 19 5 873 644 248 116 48 chr5 37861850 37862100 -114675159 - Tigger7 DNA MER2_type -66 2425 2159 5 873 582 269 107 11 chr5 37862110 37862287 -114674972 - Tigger7 DNA MER2_type -2187 304 111 5 873 396 0 0 0 chr5 37862428 37862472 -114674787 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 873 650 271 0 0 chr5 37862478 37862600 -114674659 - RSINE1 SINE B4 -21 144 23 5 873 305 333 56 16 chr5 37862701 37862826 -114674433 + MER44B DNA MER2_type 171 300 -250 5 873 189 94 0 0 chr5 37863270 37863302 -114673957 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 5 873 233 297 171 0 chr5 37864052 37864163 -114673096 + MIRb SINE MIR 124 253 -15 5 873 195 263 0 0 chr5 37864133 37864171 -114673088 + L2c LINE L2 3339 3376 -11 5 873 310 203 14 42 chr5 37864812 37864884 -114672375 - B3 SINE B2 -146 70 1 5 873 1433 207 49 88 chr5 37865730 37866116 -114671143 + MTE2a LTR MaLR 1 371 -8 5 873 1068 240 134 9 chr5 37866154 37866490 -114670769 - MTEb LTR MaLR 0 379 2 5 873 572 333 123 61 chr5 37866845 37867504 -114669755 + L1MEf LINE L1 1192 1891 -4351 5 873 588 214 149 12 chr5 37867536 37867697 -114669562 - B3A SINE B2 -15 183 1 5 873 32240 68 43 7 chr5 37867741 37873668 -114663591 + L1Md_F2 LINE L1 382 6537 -45 5 873 446 316 143 29 chr5 37873942 37874656 -114662603 + L1MEf LINE L1 3116 3910 -2236 5 873 332 309 0 7 chr5 37874822 37874962 -114662297 + (CTAGGG)n Simple_repeat Simple_repeat 2 140 0 5 873 268 276 109 29 chr5 37874994 37875132 -114662127 + L1MEf LINE L1 4189 4337 -1809 5 873 574 242 109 0 chr5 37875185 37875313 -114661946 + B3A SINE B2 8 149 -49 5 873 3224 295 52 43 chr5 37875396 37876686 -114660573 + Lx8 LINE L1 6130 7430 -43 5 873 364 323 109 43 chr5 37876994 37877389 -114659870 + L1MEf LINE L1 4578 4998 -1148 5 873 1845 174 54 6 chr5 37878041 37878393 -114658866 + ORR1D1 LTR MaLR 1 369 -5 5 873 348 338 60 0 chr5 37879265 37879403 -114657856 + MIR SINE MIR 8 153 -115 5 873 245 351 0 0 chr5 37879697 37879774 -114657485 - 4.5SRNA scRNA scRNA -8 86 10 5 874 626 327 72 64 chr5 37880118 37880346 -114656913 - ORR1E LTR MaLR 0 359 122 5 874 2446 65 6 61 chr5 37880346 37880691 -114656568 - ORR1A2 LTR MaLR 0 327 2 5 874 626 327 72 64 chr5 37880691 37880808 -114656451 - ORR1E LTR MaLR -238 121 11 5 874 214 211 39 0 chr5 37880931 37880983 -114656276 + CT-rich Low_complexity Low_complexity 1 54 0 5 874 704 240 13 27 chr5 37881368 37881518 -114655741 + RSINE1 SINE B4 1 148 -17 5 874 398 20 20 0 chr5 37882277 37882328 -114654931 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 874 276 300 55 0 chr5 37882606 37882716 -114654543 + Helitron3Na_Mam RC Helitron 200 315 -171 5 874 511 54 54 0 chr5 37883219 37883311 -114653948 + (TC)n Simple_repeat Simple_repeat 2 98 0 5 874 558 280 220 0 chr5 37883418 37883604 -114653655 - B4 SINE B4 -65 227 1 5 874 303 151 0 19 chr5 37883864 37883918 -114653341 - MLT1A1 LTR MaLR -4 404 352 5 874 252 0 0 0 chr5 37884347 37884375 -114652884 + (CAAAC)n Simple_repeat Simple_repeat 5 32 0 5 874 210 333 88 7 chr5 37884388 37884536 -114652723 + MIRc SINE MIR 11 170 -98 5 874 740 260 214 23 chr5 37884544 37884716 -114652543 - ORR1E LTR MaLR 0 359 179 5 874 1593 0 0 0 chr5 37884716 37884893 -114652366 + (GGGAGA)n Simple_repeat Simple_repeat 1 177 0 5 874 740 260 214 23 chr5 37884893 37885019 -114652240 - ORR1E LTR MaLR -181 178 5 5 874 1157 250 4 0 chr5 37885020 37885256 -114652003 + MTE2b LTR MaLR 1 237 -142 5 874 351 294 60 93 chr5 37885408 37885465 -114651794 - MLT1A LTR MaLR -196 178 130 5 874 1990 147 100 6 chr5 37885465 37885595 -114651664 - ORR1C2 LTR MaLR 0 384 251 5 874 216 0 0 0 chr5 37885595 37885619 -114651640 + (CAGG)n Simple_repeat Simple_repeat 3 26 0 5 874 1990 147 100 6 chr5 37885619 37885838 -114651421 - ORR1C2 LTR MaLR -134 250 3 5 874 351 294 60 93 chr5 37885838 37885930 -114651329 - MLT1A LTR MaLR -245 129 34 5 874 231 301 107 0 chr5 37887607 37887710 -114649549 - Helitron1Na_Mam RC Helitron -32 1030 917 5 874 529 251 153 31 chr5 37888148 37888403 -114648856 - B4 SINE B4 -2 290 5 5 874 536 264 154 36 chr5 37888783 37889003 -114648256 + MLT1B LTR MaLR 19 264 -126 5 874 36190 46 0 3 chr5 37890525 37896014 -114641245 + L1Md_T LINE L1 23 5589 -297 5 874 8726 28 0 0 chr5 37896014 37897010 -114640249 + L1Md_T LINE L1 5590 6585 0 5 874 682 281 159 8 chr5 37897182 37897433 -114639826 + B4A SINE B4 1 289 -3 5 874 635 189 0 11 chr5 37897442 37897624 -114639635 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 874 596 201 0 11 chr5 37897649 37897830 -114639429 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 874 249 175 0 0 chr5 37897833 37897873 -114639386 + (CACG)n Simple_repeat Simple_repeat 2 41 0 5 874 241 303 132 29 chr5 37898145 37898281 -114638978 + MLT2C1 LTR ERVL 195 344 -53 5 874 1105 267 63 21 chr5 37898819 37899152 -114638107 + Lx8 LINE L1 7124 7470 -3 5 874 181 208 252 19 chr5 37899885 37899988 -114637271 + MIR SINE MIR 35 161 -101 5 874 2016 171 13 13 chr5 37900008 37900394 -114636865 - Lx LINE L1 -12 6642 6257 5 874 677 186 108 23 chr5 37900749 37900925 -114636334 - B2_Mm2 SINE B2 -4 191 1 5 874 222 232 75 0 chr5 37901315 37901389 -114635870 + MIR SINE MIR 67 150 -118 5 874 229 276 0 0 chr5 37902092 37902150 -114635109 - L1_Rod LINE L1 -475 5372 5315 5 874 278 246 68 14 chr5 37903356 37903636 -114633623 + RMER17D LTR ERVK 170 464 -425 5 874 261 253 14 14 chr5 37905117 37905191 -114632068 + MIR SINE MIR 104 170 -92 5 874 324 309 9 18 chr5 37905307 37905419 -114631840 + PB1D10 SINE Alu 5 115 -2 5 874 235 303 159 49 chr5 37905681 37905844 -114631415 + MER113 DNA MER1_type 128 308 -213 5 874 437 0 0 19 chr5 37905844 37905898 -114631361 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 874 497 250 43 26 chr5 37905903 37906018 -114631241 - RSINE1 SINE B4 -45 120 4 5 874 579 238 189 44 chr5 37906053 37906370 -114630889 + MLT1A0 LTR MaLR 3 365 0 5 874 335 314 68 136 chr5 37906532 37906930 -114630329 - MLT1C LTR MaLR -6 461 14 5 874 1967 140 92 0 chr5 37906938 37907274 -114629985 + ORR1B2 LTR MaLR 1 367 0 5 874 288 0 0 0 chr5 37907947 37907979 -114629280 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 874 1345 221 132 3 chr5 37908618 37908958 -114628301 + MTD LTR MaLR 36 419 0 5 874 2412 122 138 52 chr5 37908998 37909439 -114627820 - L1_Mus2 LINE L1 0 6566 6088 6 874 229 314 47 0 chr5 37910068 37910154 -114627105 + MER31B LTR ERV1 3 92 -374 6 874 252 342 0 0 chr5 37910186 37910262 -114626997 + MTC LTR MaLR 19 94 -327 6 874 466 317 105 87 chr5 37911331 37911711 -114625548 - MLT1A1 LTR MaLR -1 407 21 6 874 480 18 0 0 chr5 37913342 37913399 -114623860 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 874 885 241 122 4 chr5 37913411 37913665 -114623594 - B4A SINE B4 -8 284 1 6 874 432 0 0 0 chr5 37914703 37914751 -114622508 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 874 776 132 6 0 chr5 37914751 37914917 -114622342 + (GA)n Simple_repeat Simple_repeat 2 168 0 6 874 345 297 0 9 chr5 37915585 37915697 -114621562 + (TGGA)n Simple_repeat Simple_repeat 1 111 0 6 874 408 100 25 12 chr5 37916981 37917062 -114620197 + (TA)n Simple_repeat Simple_repeat 1 82 0 6 874 1071 245 114 16 chr5 37917454 37917832 -114619427 - L1MA4 LINE L1 -374 5926 5512 6 874 246 191 0 0 chr5 37919087 37919129 -114618130 - L2b LINE L2 -18 3357 3316 6 874 582 235 0 0 chr5 37919479 37919594 -114617665 + PB1D10 SINE Alu 3 117 0 6 874 511 278 37 8 chr5 37920212 37920346 -114616913 - B1_Mur1 SINE Alu -10 139 2 6 874 225 65 0 0 chr5 37920401 37920432 -114616827 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 874 207 192 0 0 chr5 37920427 37920500 -114616759 + GA-rich Low_complexity Low_complexity 1 73 0 6 874 432 276 114 0 chr5 37920500 37920605 -114616654 - RSINE1 SINE B4 -46 119 3 6 874 252 0 0 0 chr5 37920959 37920987 -114616272 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 874 410 306 18 18 chr5 37920987 37921097 -114616162 - RSINE1 SINE B4 -54 111 2 6 874 188 198 146 104 chr5 37922957 37923053 -114614206 - MIRm SINE MIR -59 217 118 6 874 398 264 18 26 chr5 37923350 37923463 -114613796 + MTEa LTR MaLR 268 379 0 6 874 29 0 0 0 chr5 37923878 37923907 -114613352 + AT_rich Low_complexity Low_complexity 1 29 0 6 874 504 86 0 0 chr5 37924262 37924332 -114612927 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 874 997 363 11 4 chr5 37925072 37925346 -114611913 - B4 SINE B4 -4 288 13 6 874 21 0 0 0 chr5 37925434 37925455 -114611804 + AT_rich Low_complexity Low_complexity 1 21 0 6 874 207 0 0 0 chr5 37925455 37925478 -114611781 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 874 6403 67 35 0 chr5 37925536 37926375 -114610884 + Lx3_Mus LINE L1 6142 7009 0 6 874 1334 57 0 6 chr5 37926386 37926563 -114610696 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 6 874 890 218 48 5 chr5 37926565 37926754 -114610505 + B3 SINE B2 1 197 -19 6 874 24 0 0 0 chr5 37926754 37926778 -114610481 + AT_rich Low_complexity Low_complexity 1 24 0 6 874 1229 54 0 0 chr5 37926843 37926990 -114610269 + B1_Mus1 SINE Alu 2 148 0 6 874 225 0 0 0 chr5 37926990 37927015 -114610244 + (A)n Simple_repeat Simple_repeat 1 25 0 6 874 237 240 83 37 chr5 37927188 37927296 -114609963 - L1MA5 LINE L1 -73 6227 6115 6 874 2879 55 8 31 chr5 37927478 37927870 -114609389 - L1Md_F2 LINE L1 0 6582 6200 6 874 373 185 235 0 chr5 37928222 37928303 -114608956 + ORR1E LTR MaLR 1 100 -259 6 874 337 276 29 67 chr5 37928498 37928603 -114608656 - MIR SINE MIR -140 122 22 6 874 337 281 85 114 chr5 37928903 37929104 -114608155 + LTR79 LTR ERVL 22 216 -311 6 874 250 229 149 25 chr5 37930701 37930822 -114606437 + B1F1 SINE Alu 5 140 -9 6 874 320 268 12 0 chr5 37930839 37930921 -114606338 + ID4_ SINE ID 1 83 0 6 874 253 280 27 0 chr5 37931404 37931479 -114605780 + MADE2 DNA Mariner 4 80 0 6 874 459 0 0 0 chr5 37932001 37932052 -114605207 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 6 874 768 53 0 0 chr5 37932052 37932145 -114605114 - B1_Mus2 SINE Alu -2 145 53 6 874 608 245 32 74 chr5 37932153 37932376 -114604883 + MTEa LTR MaLR 2 216 -163 6 874 450 343 11 0 chr5 37932431 37932609 -114604650 - Lx9 LINE L1 -212 7432 7253 6 874 366 309 0 0 chr5 37932611 37932708 -114604551 + Lx9 LINE L1 7141 7237 -407 6 874 253 278 29 29 chr5 37933006 37933143 -114604116 - L1M4 LINE L1 -2877 3269 3133 6 874 477 248 188 31 chr5 37933391 37933620 -114603639 + L1MD LINE L1 3968 4232 -1914 6 874 237 83 0 0 chr5 37933734 37933770 -114603489 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 874 189 0 0 0 chr5 37934298 37934319 -114602940 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 6 874 230 295 62 25 chr5 37934333 37934413 -114602846 + MER5A1 DNA MER1_type 47 129 -37 6 874 439 101 58 8 chr5 37934616 37934736 -114602523 + (TA)n Simple_repeat Simple_repeat 1 126 0 6 874 480 321 146 26 chr5 37934909 37935677 -114601582 + L1M4 LINE L1 3753 4612 -1534 6 874 850 171 0 7 chr5 37935961 37936102 -114601157 - B1_Mus1 SINE Alu -8 140 1 6 874 558 241 24 48 chr5 37936102 37936127 -114601132 - ID_B1 SINE B4 -8 216 55 6 874 213 213 0 0 chr5 37936888 37936935 -114600324 + C-rich Low_complexity Low_complexity 4 50 0 6 874 1062 190 43 0 chr5 37937860 37938044 -114599215 + B3 SINE B2 8 199 -17 6 874 625 210 0 18 chr5 37938044 37938214 -114599045 + GA-rich Low_complexity Low_complexity 3 169 0 6 874 1458 11 0 16 chr5 37938217 37938400 -114598859 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 6 874 1074 58 0 0 chr5 37938401 37938539 -114598720 + (GAGAA)n Simple_repeat Simple_repeat 1 138 0 6 874 2264 94 28 9 chr5 37939276 37939599 -114597660 - ORR1A4 LTR MaLR 0 329 1 6 874 462 266 53 99 chr5 37939631 37939802 -114597457 - B3A SINE B2 0 198 36 6 874 4095 36 8 0 chr5 37940083 37940554 -114596705 - MT2C_Mm LTR ERVL 0 475 1 6 874 1006 307 32 28 chr5 37942225 37942510 -114594749 + B4A SINE B4 7 292 0 6 874 1150 248 19 30 chr5 37942593 37942884 -114594375 + B4A SINE B4 1 278 -14 6 874 844 140 247 0 chr5 37943844 37944022 -114593237 + URR1A DNA MER1_type 5 226 0 6 874 282 255 12 12 chr5 37944911 37945089 -114592170 + (CA)n Simple_repeat Simple_repeat 1 178 0 6 874 279 114 0 0 chr5 37945101 37945145 -114592114 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 874 247 324 112 17 chr5 37945146 37945325 -114591934 + L1M5 LINE L1 5330 5525 -919 6 874 516 319 256 40 chr5 37946169 37946700 -114590559 - L1MDa LINE L1 -4201 2432 1780 6 874 1343 202 113 29 chr5 37946700 37947046 -114590213 + MTEa LTR MaLR 5 379 0 6 874 516 315 68 50 chr5 37947046 37947219 -114590040 - L1MDa LINE L1 -4854 1779 1609 6 874 378 0 0 0 chr5 37947560 37947602 -114589657 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 6 874 1095 33 60 0 chr5 37947602 37947752 -114589507 - B2_Mm1a SINE B2 -33 160 2 6 874 1277 235 19 7 chr5 37947858 37948128 -114589131 + B4 SINE B4 2 274 -18 6 874 432 55 0 0 chr5 37948131 37948186 -114589073 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 874 1078 102 0 7 chr5 37948194 37948342 -114588917 - B1_Mus1 SINE Alu 0 148 2 6 874 596 129 10 0 chr5 37950130 37950231 -114587028 + (TC)n Simple_repeat Simple_repeat 1 102 0 6 874 531 45 0 0 chr5 37950316 37950382 -114586877 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 874 195 352 56 19 chr5 37951385 37951492 -114585767 - MIRc SINE MIR -97 171 61 6 874 987 272 79 16 chr5 37951816 37952166 -114585093 + MTE2b LTR MaLR 39 417 -2 6 874 423 264 53 35 chr5 37953526 37953695 -114583564 + RMER15 LTR ERVL 356 527 -48 6 874 668 314 22 48 chr5 37954613 37954881 -114582378 + MTE2a LTR MaLR 59 319 -60 6 874 4742 41 2 0 chr5 37956064 37956623 -114580636 - L1Md_T LINE L1 0 6582 6023 6 874 12113 18 0 0 chr5 37956623 37958013 -114579246 + L1_Mm LINE L1 2571 3960 -1923 6 874 821 38 9 0 chr5 37958409 37958514 -114578745 + (GA)n Simple_repeat Simple_repeat 1 106 0 6 874 5818 70 5 8 chr5 37958580 37959333 -114577926 - L1Md_F2 LINE L1 -2 6580 5830 6 874 2394 263 86 19 chr5 37959535 37960206 -114577053 + Lx5 LINE L1 6318 7033 -17 6 874 23 33 0 0 chr5 37960218 37960248 -114577011 + AT_rich Low_complexity Low_complexity 1 30 0 6 874 258 192 0 0 chr5 37960274 37960326 -114576933 + GA-rich Low_complexity Low_complexity 1 52 0 6 874 233 264 19 0 chr5 37960946 37960999 -114576260 + L1M3 LINE L1 5415 5468 -703 6 874 399 127 0 0 chr5 37961025 37961088 -114576171 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 874 245 211 28 0 chr5 37961105 37961176 -114576083 + GA-rich Low_complexity Low_complexity 1 73 0 6 874 408 310 103 12 chr5 37961409 37961651 -114575608 + L1M5 LINE L1 4485 4748 -1398 6 874 231 372 39 0 chr5 37961797 37961950 -114575309 + L1M5 LINE L1 5122 5280 -866 6 874 509 328 34 6 chr5 37961951 37962126 -114575133 + B3A SINE B2 1 180 -18 6 874 392 77 0 15 chr5 37962127 37962193 -114575066 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 874 21 57 0 0 chr5 37962211 37962246 -114575013 + AT_rich Low_complexity Low_complexity 1 35 0 6 874 1306 131 0 5 chr5 37962290 37962497 -114574762 + Lx LINE L1 6449 6654 0 6 874 300 208 0 29 chr5 37962498 37962549 -114574710 + A-rich Low_complexity Low_complexity 3 51 0 6 874 1109 123 0 6 chr5 37962549 37962729 -114574530 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 6 874 300 208 0 29 chr5 37962729 37962781 -114574478 + A-rich Low_complexity Low_complexity 52 103 0 6 874 919 261 141 0 chr5 37963700 37964006 -114573253 - MTE2a LTR MaLR -30 349 1 6 874 26 0 0 0 chr5 37964235 37964261 -114572998 + AT_rich Low_complexity Low_complexity 1 26 0 6 874 277 255 59 30 chr5 37964285 37964386 -114572873 + L1MCc LINE L1 1198 1301 -5122 6 874 2669 192 78 180 chr5 37964704 37965685 -114571574 + RMER1B Other Other 186 1066 0 7 874 209 59 59 0 chr5 37966052 37966086 -114571173 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 7 874 522 46 0 0 chr5 37967963 37968028 -114569231 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 874 2422 107 146 12 chr5 37968179 37968604 -114568655 + RLTR45 LTR ERVK 1 482 0 7 874 285 291 12 12 chr5 37969564 37969644 -114567615 - ID4_ SINE ID -3 80 1 7 874 1000 129 215 0 chr5 37969781 37969967 -114567292 - URR1A DNA MER1_type 0 226 1 7 874 396 0 0 0 chr5 37970091 37970135 -114567124 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 874 859 211 39 100 chr5 37970152 37970240 -114567019 - B4 SINE B4 0 292 224 7 874 297 0 0 0 chr5 37970240 37970273 -114566986 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 7 874 859 211 39 100 chr5 37970273 37970494 -114566765 - B4 SINE B4 -69 223 4 7 874 42128 4 0 0 chr5 37970506 37977083 -114560176 - L1Md_A LINE L1 0 6582 7 7 874 292 328 91 25 chr5 37978177 37978496 -114558763 + L1ME3A LINE L1 5555 5894 -279 7 874 392 58 0 0 chr5 37980245 37980297 -114556962 - L1Md_F2 LINE L1 -628 5954 5903 7 874 5569 38 0 21 chr5 37980297 37980978 -114556281 + L1Md_F2 LINE L1 5916 6582 0 7 874 235 366 54 0 chr5 37981490 37981602 -114555657 + Charlie4a DNA MER1_type 371 488 -20 7 874 209 326 53 0 chr5 37981619 37981714 -114555545 + L2a LINE L2 3322 3421 -5 7 874 623 299 97 6 chr5 37982726 37983046 -114554213 + Charlie1 DNA MER1_type 117 465 -2316 7 874 313 301 0 9 chr5 37983352 37983466 -114553793 + (TGGA)n Simple_repeat Simple_repeat 3 115 0 7 874 465 19 0 0 chr5 37984991 37985045 -114552214 + (TC)n Simple_repeat Simple_repeat 2 55 0 7 874 2534 56 0 6 chr5 37985548 37985870 -114551389 + L1_Mus1 LINE L1 6247 6566 -1 7 874 1127 130 117 28 chr5 37986005 37986219 -114551040 + Lx4B LINE L1 6822 7054 -4 7 874 354 272 74 81 chr5 37986600 37986748 -114550511 + B4A SINE B4 1 147 -145 7 874 269 248 20 171 chr5 37986779 37986925 -114550334 + MT2B LTR ERVL 141 264 -337 7 874 621 211 0 76 chr5 37986810 37986954 -114550305 + B1_Mur1 SINE Alu 11 143 -6 7 874 258 156 0 0 chr5 37986954 37986999 -114550260 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 7 874 276 30 0 0 chr5 37987050 37987083 -114550176 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 874 212 275 0 60 chr5 37987440 37987591 -114549668 + (CTG)n Simple_repeat Simple_repeat 2 143 0 7 874 1459 182 39 8 chr5 37988419 37988748 -114548511 - MTD LTR MaLR 0 419 13 7 874 1277 237 55 22 chr5 37990318 37990685 -114546574 - MTE2a LTR MaLR 0 379 1 7 874 21 0 0 0 chr5 37990719 37990740 -114546519 + AT_rich Low_complexity Low_complexity 1 21 0 7 874 3415 183 29 32 chr5 37990754 37991324 -114545935 - Lx5 LINE L1 -3 7047 6479 7 874 2413 60 119 11 chr5 37991324 37991676 -114545583 + RLTR10 LTR ERVK 1 390 0 7 874 3415 183 29 32 chr5 37991676 37991754 -114545505 - Lx5 LINE L1 -572 6478 6401 7 874 333 0 0 0 chr5 37992451 37992488 -114544771 + (TAA)n Simple_repeat Simple_repeat 2 38 0 7 874 748 272 121 10 chr5 37993004 37993301 -114543958 + L1MA5 LINE L1 5692 6021 -279 7 874 458 125 0 12 chr5 37993303 37993384 -114543875 + (GGA)n Simple_repeat Simple_repeat 3 82 0 7 874 626 266 19 31 chr5 37993654 37993813 -114543446 + RSINE1 SINE B4 3 159 -6 7 874 228 280 27 91 chr5 37994286 37994396 -114542863 - MIRb SINE MIR -46 222 120 7 874 375 317 28 14 chr5 37995514 37995658 -114541601 - ORR1E LTR MaLR -210 149 4 7 874 268 288 14 0 chr5 37995792 37995865 -114541394 + Tigger5 DNA MER2_type 2333 2406 0 7 874 2533 264 82 25 chr5 37997005 37997316 -114539943 + L1_Mur3 LINE L1 1963 2288 -3592 7 874 201 39 0 0 chr5 37997316 37997342 -114539917 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 7 874 2533 264 82 25 chr5 37997342 37998104 -114539155 + L1_Mur3 LINE L1 2289 3096 -2784 7 874 407 262 153 45 chr5 37998111 37998287 -114538972 + L1_Mur2 LINE L1 5531 5725 -152 7 874 1003 51 29 0 chr5 37998336 37998473 -114538786 - L1Md_A LINE L1 -1 6581 6441 7 874 8904 16 4 0 chr5 37998473 37999479 -114537780 - L1_Mm LINE L1 -171 5712 4703 7 874 1460 69 0 0 chr5 37999479 37999667 -114537592 + L1Md_T LINE L1 6394 6581 -1 7 874 2928 15 0 0 chr5 37999667 38000000 -114537259 - L1_Mm LINE L1 -2920 2963 2631 7 874 12118 25 0 18 chr5 38000000 38002015 -114535244 - L1Md_A LINE L1 -3253 2630 660 1 874 257 205 51 0 chr5 38002010 38002088 -114535171 - L1M1 LINE L1 -463 5840 5759 2 874 851 314 33 3 chr5 38002096 38002403 -114534856 + Lx8 LINE L1 6430 6745 -728 3 874 461 107 58 35 chr5 38002420 38002594 -114534665 + (TA)n Simple_repeat Simple_repeat 2 179 0 4 874 405 134 56 25 chr5 38002607 38002928 -114534331 + (TA)n Simple_repeat Simple_repeat 1 331 0 4 874 1143 310 14 11 chr5 38002930 38003282 -114533977 + Lx8 LINE L1 6756 7108 -365 3 874 328 368 20 28 chr5 38003334 38003583 -114533676 + Lx8 LINE L1 7221 7467 -6 3 874 436 257 255 7 chr5 38005391 38005432 -114531827 + B4A SINE B4 51 91 -201 5 874 5252 46 0 2 chr5 38005432 38006064 -114531195 + L1Md_F2 LINE L1 5952 6582 0 6 874 436 257 255 7 chr5 38006064 38006167 -114531092 + B4A SINE B4 92 231 -61 5 874 462 36 0 0 chr5 38006168 38006224 -114531035 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 874 2345 68 3 7 chr5 38007012 38007321 -114529938 + L1_Mus2 LINE L1 6259 6566 0 8 874 1556 190 21 101 chr5 38007954 38008382 -114528877 - ORR1B1 LTR MaLR 0 394 1 9 109 9051 53 28 0 chr5 38009838 38011651 -114525608 - L1Md_F2 LINE L1 0 6582 4740 1 875 201 393 29 0 chr5 38014852 38014992 -114522267 + MIRb SINE MIR 55 198 -70 1 875 465 294 84 104 chr5 38015081 38015438 -114521821 + ORR1E LTR MaLR 5 354 -5 1 875 414 135 8 53 chr5 38015817 38015950 -114521309 + RMER17A LTR ERVK 321 447 -304 1 875 2151 179 60 52 chr5 38016952 38017506 -114519753 - RLTR20B3 LTR ERVK -13 564 7 1 875 941 139 0 65 chr5 38017722 38017907 -114519352 - L1Md_F3 LINE L1 -2 6582 6410 1 875 181 310 81 35 chr5 38018431 38018518 -114518741 - MIR SINE MIR -64 198 108 1 875 246 156 0 0 chr5 38020294 38020339 -114516920 + GA-rich Low_complexity Low_complexity 2 46 0 1 875 401 0 20 0 chr5 38020700 38020749 -114516510 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 1 875 1279 241 140 29 chr5 38020862 38021306 -114515953 + ORR1E-int LTR MaLR 1059 1551 -29 1 875 920 205 32 13 chr5 38021286 38021525 -114515734 + ORR1E LTR MaLR 5 241 -133 1 875 361 292 221 0 chr5 38021650 38021804 -114515455 + Tigger7 DNA MER2_type 37 224 -2267 2 875 1052 255 99 37 chr5 38021836 38022211 -114515048 - Lx8 LINE L1 0 7473 7076 2 875 4200 280 120 48 chr5 38022277 38024582 -114512677 + Lx7 LINE L1 3583 6112 -1584 2 875 490 292 81 14 chr5 38024655 38024877 -114512382 + Tigger7 DNA MER2_type 2151 2387 -104 2 875 861 103 0 0 chr5 38024878 38025004 -114512255 + (TATATG)n Simple_repeat Simple_repeat 4 129 0 2 875 1902 145 16 0 chr5 38026097 38026400 -114510859 + Lx3C LINE L1 6661 6968 -8 2 875 22 35 0 0 chr5 38026400 38026429 -114510830 + AT_rich Low_complexity Low_complexity 1 29 0 2 875 335 320 80 19 chr5 38026939 38027374 -114509885 + L1M4c LINE L1 1455 2130 -3986 2 875 180 0 0 0 chr5 38027492 38027512 -114509747 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 875 243 88 0 0 chr5 38027613 38027647 -114509612 + (CAA)n Simple_repeat Simple_repeat 3 36 0 2 875 252 257 0 0 chr5 38027676 38027750 -114509509 + L1_Rod LINE L1 2132 2205 -3642 2 875 468 121 87 39 chr5 38027868 38027971 -114509288 + RMER19B LTR ERVK 1 108 -794 3 875 254 211 61 0 chr5 38028072 38028129 -114509130 + L1M4c LINE L1 2726 2795 -3321 2 875 830 221 23 6 chr5 38028140 38028317 -114508942 + B3 SINE B2 1 180 -36 3 875 1309 297 80 34 chr5 38028323 38029024 -114508235 + L1M4c LINE L1 3677 4409 -1707 2 875 4085 162 43 76 chr5 38029129 38030049 -114507210 + RMER19B LTR ERVK 1 890 -12 3 875 498 272 34 34 chr5 38030062 38030241 -114507018 - B4 SINE B4 -49 243 65 3 875 444 297 131 12 chr5 38030264 38030516 -114506743 + L1M2 LINE L1 4190 4471 -1672 3 875 2029 199 40 5 chr5 38032374 38032779 -114504480 + MTD LTR MaLR 1 419 0 3 875 548 259 174 8 chr5 38033056 38033321 -114503938 + MLT1B LTR MaLR 5 313 -77 3 875 243 233 50 0 chr5 38033329 38033389 -114503870 + ORR1B1 LTR MaLR 10 72 -287 3 875 196 28 83 0 chr5 38034446 38034482 -114502777 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 875 1414 156 31 4 chr5 38036806 38037063 -114500196 + ORR1B1 LTR MaLR 123 386 -8 3 875 240 355 60 26 chr5 38037069 38037455 -114499804 + L1MEf LINE L1 2132 2541 -3605 3 875 716 258 62 9 chr5 38037540 38037751 -114499508 - MTEa LTR MaLR -11 368 147 4 875 266 291 101 7 chr5 38037812 38037961 -114499298 + L1MEf LINE L1 3795 3957 -2189 3 875 445 321 31 59 chr5 38038614 38038869 -114498390 + B4A SINE B4 45 292 0 4 875 548 97 0 11 chr5 38038905 38038999 -114498260 + (CA)n Simple_repeat Simple_repeat 1 93 0 4 875 980 176 253 47 chr5 38039133 38039473 -114497786 - MTD LTR MaLR 0 419 10 4 875 229 281 16 109 chr5 38039599 38039727 -114497532 + MTEb LTR MaLR 256 371 -8 4 875 493 307 29 0 chr5 38041006 38041143 -114496116 - ID_B1 SINE B4 -74 150 10 4 875 245 29 0 29 chr5 38042618 38042653 -114494606 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 4 875 211 347 83 0 chr5 38042839 38042911 -114494348 + MIR SINE MIR 35 112 -150 4 875 270 288 86 43 chr5 38042950 38043066 -114494193 - MTEb LTR MaLR -8 371 251 4 875 3522 23 2 0 chr5 38043114 38043507 -114493752 - MTA_Mm LTR MaLR 0 396 3 4 875 1119 215 50 11 chr5 38043686 38043981 -114493278 - MTD LTR MaLR -14 405 100 5 875 396 0 0 0 chr5 38044033 38044077 -114493182 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 875 421 259 274 0 chr5 38044824 38044959 -114492300 - ID_B1 SINE B4 -8 216 45 5 875 526 311 70 77 chr5 38045317 38045589 -114491670 - MTE2a LTR MaLR -52 327 58 5 875 802 200 23 106 chr5 38045603 38045821 -114491438 - URR1A DNA MER1_type 0 226 27 5 875 291 176 0 0 chr5 38045849 38045900 -114491359 - MTE2a LTR MaLR -328 51 1 5 875 430 302 43 14 chr5 38046083 38046147 -114491112 + RMER30 DNA MER1_type 21 84 -118 5 875 198 0 0 0 chr5 38046147 38046169 -114491090 + (CCA)n Simple_repeat Simple_repeat 2 23 0 5 875 430 302 43 14 chr5 38046169 38046245 -114491014 + RMER30 DNA MER1_type 85 164 -38 5 875 493 276 215 36 chr5 38046996 38047270 -114489989 - MTE2a LTR MaLR 0 379 57 5 875 330 353 30 15 chr5 38047375 38047510 -114489749 - MLT1C LTR MaLR -8 459 323 5 875 251 282 125 18 chr5 38048584 38048696 -114488563 + MLT1B LTR MaLR 122 245 -145 5 875 1010 282 38 54 chr5 38050257 38050703 -114486556 + L1M3 LINE L1 3337 3775 -2365 6 875 681 309 87 85 chr5 38051078 38051315 -114485944 + L1M3 LINE L1 3919 4169 -1971 6 875 458 286 40 0 chr5 38051315 38051441 -114485818 + B1F SINE Alu 1 131 -18 6 875 681 309 87 85 chr5 38051441 38052012 -114485247 + L1M3 LINE L1 4170 4728 -1412 6 875 236 291 23 11 chr5 38052042 38052129 -114485130 + ORR1E LTR MaLR 15 102 -257 6 875 340 291 8 49 chr5 38053409 38053532 -114483727 + GA-rich Low_complexity Low_complexity 2 119 0 6 875 311 180 108 20 chr5 38053854 38053956 -114483303 - MLT1A0 LTR MaLR -204 161 51 6 875 1059 261 46 0 chr5 38054023 38054326 -114482933 - MTE2b LTR MaLR -62 317 1 6 875 353 276 100 63 chr5 38054679 38055079 -114482180 + MLT2B4 LTR ERVL 13 559 -8 6 875 411 385 79 10 chr5 38055136 38055527 -114481732 + LTR16C LTR ERVL 72 489 0 6 875 1319 225 86 32 chr5 38055603 38056044 -114481215 + RMER5 LTR ERV1 40 504 -30 6 875 626 249 270 3 chr5 38056865 38057158 -114480101 + MTE2b LTR MaLR 6 377 -2 6 875 888 290 19 0 chr5 38058457 38058664 -114478595 - B3 SINE B2 0 216 6 7 875 339 317 74 21 chr5 38059295 38059485 -114477774 + L1M5 LINE L1 5255 5454 -719 7 875 664 257 34 28 chr5 38060075 38060251 -114477008 + B3A SINE B2 22 198 0 7 875 4434 104 22 8 chr5 38060263 38061032 -114476227 - Lx4A LINE L1 -835 6223 5442 7 875 5818 122 3 17 chr5 38061032 38061892 -114475367 + Lx4A LINE L1 6208 7055 -3 7 875 507 33 0 0 chr5 38061932 38061993 -114475266 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 875 201 382 96 21 chr5 38062484 38062671 -114474588 - MIR SINE MIR -3 259 59 7 875 373 271 76 0 chr5 38062688 38062806 -114474453 + ORR1C1 LTR MaLR 8 134 -244 7 875 300 330 131 10 chr5 38063901 38064100 -114473159 + Charlie8 DNA MER1_type 1 223 -2205 7 875 519 95 0 0 chr5 38064457 38064531 -114472728 + (TA)n Simple_repeat Simple_repeat 2 75 0 7 875 1644 167 68 13 chr5 38064714 38065024 -114472235 + ORR1B1 LTR MaLR 1 327 -2 7 875 7334 166 60 14 chr5 38065026 38066466 -114470793 + ORR1B1-int LTR MaLR 1 1507 -2 7 875 1928 179 64 19 chr5 38066468 38066843 -114470416 + ORR1B1 LTR MaLR 1 392 -2 7 875 630 236 111 0 chr5 38066971 38067151 -114470108 + MLT1D LTR MaLR 252 431 -74 8 875 327 357 39 8 chr5 38067719 38067846 -114469413 + MLT1H LTR MaLR 77 207 -342 8 875 2077 153 31 67 chr5 38067856 38068247 -114469012 - ORR1C1 LTR MaLR -1 377 1 8 875 543 308 68 11 chr5 38068266 38068532 -114468727 - L1M2 LINE L1 -1004 5139 4859 8 875 301 276 333 15 chr5 38068558 38068753 -114468506 + MLT1H LTR MaLR 293 549 0 8 875 1122 268 67 22 chr5 38068840 38069291 -114467968 + L1MA5 LINE L1 4576 5046 -1097 8 875 1195 263 73 27 chr5 38069302 38069630 -114467629 + ORR1E LTR MaLR 13 355 -4 8 875 263 236 343 0 chr5 38069633 38069773 -114467486 + L1MA5 LINE L1 5046 5233 -910 8 875 849 136 6 28 chr5 38069946 38070128 -114467131 + GA-rich Low_complexity Low_complexity 3 180 0 8 875 285 286 9 19 chr5 38070384 38070491 -114466768 + L1MA5 LINE L1 5521 5626 -674 8 875 557 257 175 60 chr5 38070505 38070885 -114466374 + RMER15 LTR ERVL 8 531 -44 8 875 520 275 137 70 chr5 38071048 38071214 -114466045 + L1MA5 LINE L1 5858 6040 -260 8 875 363 293 0 0 chr5 38071214 38071296 -114465963 + ID4 SINE ID 1 82 -1 8 875 520 275 137 70 chr5 38071296 38071544 -114465715 + L1MA5 LINE L1 6041 6300 0 8 875 303 376 66 10 chr5 38071829 38072025 -114465234 - L1M4 LINE L1 -5754 788 582 8 875 1188 72 0 0 chr5 38072027 38072180 -114465079 - B2_Mm2 SINE B2 -31 164 12 9 875 311 235 104 23 chr5 38072181 38072323 -114464936 + Lx4B LINE L1 6824 7053 -5 9 875 28 0 0 0 chr5 38072421 38072449 -114464810 + AT_rich Low_complexity Low_complexity 1 28 0 9 875 239 262 32 16 chr5 38072607 38072669 -114464590 + MTEb LTR MaLR 116 178 -201 9 875 324 0 0 0 chr5 38073921 38073957 -114463302 + (A)n Simple_repeat Simple_repeat 1 36 0 9 875 189 0 0 0 chr5 38075068 38075089 -114462170 + (GGGA)n Simple_repeat Simple_repeat 4 24 0 9 875 300 262 0 15 chr5 38075423 38075489 -114461770 + ORR1E LTR MaLR 6 70 -300 9 875 804 220 21 62 chr5 38075489 38075683 -114461576 + ORR1D1 LTR MaLR 1 186 -188 9 875 701 86 19 0 chr5 38075685 38075790 -114461469 + (TCCC)n Simple_repeat Simple_repeat 3 109 0 9 875 793 162 157 31 chr5 38075799 38075874 -114461385 + ORR1D1 LTR MaLR 157 226 -148 9 875 306 0 0 0 chr5 38075874 38075908 -114461351 + (CCTG)n Simple_repeat Simple_repeat 3 36 0 9 875 793 162 157 31 chr5 38075908 38076023 -114461236 + ORR1D1 LTR MaLR 227 370 -4 9 875 903 234 105 34 chr5 38076021 38076260 -114460999 + ORR1E LTR MaLR 61 316 -43 9 875 7648 70 12 2 chr5 38076278 38077688 -114459571 - L1_Mus1 LINE L1 -1 6566 5143 1 875 2442 68 6 44 chr5 38077689 38078029 -114459230 + IAPLTR2b LTR ERVK 1 327 0 1 875 374 73 0 18 chr5 38078031 38078087 -114459172 + IAPEz-int LTR ERVK 3 57 -1930 1 875 4333 82 15 54 chr5 38078070 38078832 -114458427 + IAPEz-int LTR ERVK 10 662 -5819 1 875 1019 42 0 0 chr5 38078832 38078951 -114458308 + IAPEz-int LTR ERVK 1359 1477 -5004 1 875 1909 86 4 0 chr5 38078952 38079197 -114458062 + IAPEz-int LTR ERVK 2252 2497 -5183 1 875 15778 32 3 0 chr5 38079215 38081013 -114456246 + IAPEz-int LTR ERVK 4678 6481 0 1 875 2672 101 14 40 chr5 38081013 38081435 -114455824 + IAPLTR2a LTR ERVK 1 411 0 1 875 6265 83 0 0 chr5 38081435 38082264 -114454995 - L1_Mus1 LINE L1 -736 5147 4319 1 875 239 200 33 16 chr5 38082264 38082325 -114454934 + ORR1E LTR MaLR 304 365 -5 9 875 243 0 0 0 chr5 38082325 38082352 -114454907 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 875 183 261 84 84 chr5 38082715 38082786 -114454473 - L2b LINE L2 -47 3328 3258 1 875 232 291 36 151 chr5 38083260 38083426 -114453833 + MT2B LTR ERVL 95 241 -360 1 875 431 265 0 41 chr5 38083349 38083471 -114453788 + B1F2 SINE Alu 14 130 -19 1 875 1570 279 63 70 chr5 38084899 38085646 -114451613 + Lx9 LINE L1 6901 7642 -2 1 875 378 288 125 30 chr5 38086062 38086246 -114451013 + L1MEb LINE L1 816 1027 -5173 1 875 537 16 0 0 chr5 38086246 38086308 -114450951 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 875 365 387 82 48 chr5 38086308 38086331 -114450928 + L1MEb LINE L1 1028 1048 -5152 1 875 279 0 0 0 chr5 38086331 38086362 -114450897 + (CAT)n Simple_repeat Simple_repeat 1 31 0 1 875 365 387 82 48 chr5 38086362 38086612 -114450647 + L1MEb LINE L1 1049 1288 -4912 1 875 855 251 19 14 chr5 38086740 38086950 -114450309 - B3 SINE B2 -5 211 1 1 875 635 230 57 7 chr5 38087632 38087772 -114449487 + B1F SINE Alu 2 148 -1 1 875 1523 262 79 14 chr5 38087835 38088057 -114449202 + MT2A LTR ERVL 1 233 -300 1 875 459 0 0 0 chr5 38088057 38088108 -114449151 + (CTG)n Simple_repeat Simple_repeat 3 53 0 1 875 1523 262 79 14 chr5 38088108 38088314 -114448945 + MT2A LTR ERVL 234 457 -76 1 875 276 77 0 0 chr5 38088327 38088366 -114448893 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 875 290 344 14 64 chr5 38088386 38088526 -114448733 - B3 SINE B2 -72 144 12 1 875 396 0 0 0 chr5 38088915 38088959 -114448300 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 875 297 0 0 0 chr5 38088959 38088991 -114448268 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 875 230 345 35 12 chr5 38089068 38089153 -114448106 + MER45B DNA Tip100 397 483 -557 1 875 308 316 109 26 chr5 38089764 38089920 -114447339 - MIRb SINE MIR -21 187 19 1 875 299 312 109 16 chr5 38089982 38090161 -114447098 - MIR SINE MIR -5 203 9 1 875 560 272 64 140 chr5 38090521 38090786 -114446473 + B4A SINE B4 7 251 -41 1 875 460 180 0 1 chr5 38090787 38090870 -114446389 + ORR1C1 LTR MaLR 3 84 -310 1 875 772 338 40 27 chr5 38090970 38091391 -114445868 - L1MA4 LINE L1 -381 6621 6185 1 875 313 262 12 12 chr5 38091391 38091472 -114445787 - ID4 SINE ID -2 81 1 1 875 772 337 62 30 chr5 38091472 38091675 -114445584 - L1MA4 LINE L1 -819 6186 5977 1 875 235 207 35 0 chr5 38092398 38092456 -114444803 - L1_Rod LINE L1 -632 5215 5156 1 875 283 300 27 9 chr5 38092564 38092675 -114444584 - L1MA4 LINE L1 -3894 2951 2839 1 875 721 302 62 76 chr5 38092722 38093457 -114443802 - L1MA4 LINE L1 -4217 2632 1953 1 875 315 0 0 0 chr5 38093460 38093495 -114443764 + (CTA)n Simple_repeat Simple_repeat 1 35 0 1 875 626 239 198 21 chr5 38093515 38093707 -114443552 - MTD LTR MaLR -67 352 127 1 875 893 78 70 0 chr5 38093712 38093840 -114443419 + B2_Mm2 SINE B2 55 191 -4 1 875 405 298 22 51 chr5 38093820 38093958 -114443301 - MTD LTR MaLR -285 134 1 1 875 351 295 45 0 chr5 38094872 38094984 -114442275 + MT2A LTR ERVL 3 119 -414 1 875 1451 236 57 31 chr5 38094885 38095239 -114442020 + MTE2a LTR MaLR 17 379 0 1 875 550 166 6 55 chr5 38095544 38095684 -114441575 + MTD LTR MaLR 1 128 -268 1 875 295 282 0 0 chr5 38095619 38095697 -114441562 - MTD LTR MaLR -240 179 102 1 875 413 293 34 17 chr5 38096072 38096172 -114441087 - B1F2 SINE Alu -26 123 20 1 875 2159 156 29 18 chr5 38096172 38096552 -114440707 - ORR1C2 LTR MaLR 0 384 1 1 875 413 293 34 17 chr5 38096552 38096569 -114440690 - B1F2 SINE Alu -130 19 4 1 875 317 291 23 0 chr5 38096584 38096670 -114440589 + MER33 DNA MER1_type 38 125 -199 1 875 222 37 0 0 chr5 38097021 38097048 -114440211 + (A)n Simple_repeat Simple_repeat 1 27 0 1 875 451 277 28 28 chr5 38097088 38097270 -114439989 + L1ME3B LINE L1 5787 5968 -272 1 875 436 348 147 47 chr5 38097822 38098392 -114438867 + L1MEg LINE L1 346 972 -5270 1 875 348 316 124 27 chr5 38098616 38099059 -114438200 + L1MEg LINE L1 1239 1724 -4518 1 875 287 236 0 53 chr5 38099167 38099261 -114437998 + L1MEg LINE L1 3243 3331 -2815 1 875 684 319 24 0 chr5 38099439 38099646 -114437613 + B3 SINE B2 1 212 -4 1 875 310 347 181 4 chr5 38099682 38099908 -114437351 - L1M5 LINE L1 -2539 3607 3342 1 875 1872 189 35 76 chr5 38100000 38100105 -114437154 + MTD LTR MaLR 13 118 -301 1 875 200 35 35 0 chr5 38100105 38100134 -114437125 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 1 875 1872 189 35 76 chr5 38100134 38100451 -114436808 + MTD LTR MaLR 119 417 -2 1 875 718 191 83 80 chr5 38100855 38101065 -114436194 + B3A SINE B2 1 216 0 1 875 339 25 0 0 chr5 38102097 38102137 -114435122 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 875 756 33 0 0 chr5 38102137 38102227 -114435032 + (GA)n Simple_repeat Simple_repeat 2 92 0 1 875 1360 237 41 39 chr5 38103655 38103993 -114433266 + ORR1E LTR MaLR 1 339 -20 1 875 335 288 30 13 chr5 38104276 38104402 -114432857 + ORR1E LTR MaLR 275 372 -7 1 875 285 220 94 35 chr5 38104921 38105006 -114432253 - Kanga1d DNA Tc2 -19 590 501 1 875 288 0 0 0 chr5 38106775 38106807 -114430452 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 875 291 54 0 0 chr5 38106807 38106843 -114430416 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 875 204 188 0 0 chr5 38106843 38106912 -114430347 + CT-rich Low_complexity Low_complexity 1 69 0 1 875 510 61 0 0 chr5 38107472 38107538 -114429721 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 875 203 300 14 0 chr5 38108376 38108446 -114428813 + GA-rich Low_complexity Low_complexity 1 71 0 1 875 351 0 0 0 chr5 38108749 38108788 -114428471 + (A)n Simple_repeat Simple_repeat 1 39 0 1 875 241 338 9 53 chr5 38109526 38109663 -114427596 + MIRb SINE MIR 72 198 -64 1 875 225 94 0 0 chr5 38110393 38110425 -114426834 + (TCC)n Simple_repeat Simple_repeat 2 33 0 1 875 192 351 65 36 chr5 38110438 38110577 -114426682 - MIRb SINE MIR -33 235 93 1 875 221 222 31 16 chr5 38110835 38110899 -114426360 - MIRb SINE MIR -99 169 105 1 875 776 147 0 0 chr5 38110962 38111078 -114426181 + B1_Mus1 SINE Alu 28 143 -5 1 875 260 329 104 52 chr5 38111101 38111274 -114425985 - MLT1C LTR MaLR -56 411 230 1 875 282 327 58 69 chr5 38112927 38113101 -114424158 + LTR48B LTR ERV1 126 297 -490 1 875 366 280 48 8 chr5 38113218 38113344 -114423915 + LTR48B LTR ERV1 386 516 -128 1 875 815 270 75 66 chr5 38113348 38113691 -114423568 - ORR1E LTR MaLR -8 371 1 1 875 740 272 50 83 chr5 38113693 38113994 -114423265 + B4 SINE B4 2 292 0 1 875 1273 221 136 7 chr5 38114192 38114502 -114422757 - MTD LTR MaLR 0 419 70 1 875 962 141 0 14 chr5 38114539 38114683 -114422576 - B1_Mus1 SINE Alu -1 147 6 1 875 413 221 18 0 chr5 38114708 38114821 -114422438 - Lx5 LINE L1 0 7050 6936 1 875 192 357 35 12 chr5 38115181 38115266 -114421993 - L2b LINE L2 -31 3344 3258 1 875 203 133 22 0 chr5 38115389 38115434 -114421825 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 875 690 82 0 0 chr5 38115491 38115589 -114421670 + (TG)n Simple_repeat Simple_repeat 2 99 0 1 875 566 295 0 8 chr5 38115705 38115838 -114421421 - RSINE1 SINE B4 -22 143 12 1 875 927 269 0 59 chr5 38115881 38116118 -114421141 - B4 SINE B4 -68 224 2 1 875 225 0 0 0 chr5 38116907 38116932 -114420327 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 1 875 1319 85 11 0 chr5 38117172 38117349 -114419910 + B2_Mm1t SINE B2 1 179 -14 1 875 270 0 0 0 chr5 38117425 38117455 -114419804 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 875 293 260 79 47 chr5 38117686 38117876 -114419383 + L1MB3 LINE L1 5978 6173 -10 1 875 32 0 0 0 chr5 38117991 38118023 -114419236 + AT_rich Low_complexity Low_complexity 1 32 0 1 875 198 0 0 0 chr5 38118023 38118045 -114419214 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1 875 938 184 76 10 chr5 38118058 38118256 -114419003 + B3 SINE B2 2 212 -4 1 875 21 0 0 0 chr5 38118426 38118447 -114418812 + AT_rich Low_complexity Low_complexity 1 21 0 1 875 8654 9 0 3 chr5 38118447 38119602 -114417657 - L1Md_T LINE L1 0 6582 5431 1 875 184 213 0 41 chr5 38120017 38120066 -114417193 - MIRc SINE MIR -144 124 78 1 875 986 142 0 19 chr5 38120283 38120499 -114416760 + (CCTG)n Simple_repeat Simple_repeat 1 212 0 1 875 2158 162 5 76 chr5 38120712 38121119 -114416140 + ORR1C1 LTR MaLR 1 378 0 1 875 1038 96 21 17 chr5 38121142 38121390 -114415869 + (TAGA)n Simple_repeat Simple_repeat 1 249 0 1 875 235 297 11 42 chr5 38122843 38122938 -114414321 - ORR1E LTR MaLR -13 357 266 1 875 696 305 67 54 chr5 38123179 38123477 -114413782 - ORR1E LTR MaLR -49 310 9 1 875 471 78 0 0 chr5 38123494 38123558 -114413701 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 875 953 253 128 0 chr5 38124170 38124360 -114412899 + B4A SINE B4 3 215 -77 1 875 423 0 0 0 chr5 38124360 38124407 -114412852 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 875 953 253 128 0 chr5 38124407 38124473 -114412786 + B4A SINE B4 216 291 -1 1 875 657 96 0 0 chr5 38124510 38124604 -114412655 + (CA)n Simple_repeat Simple_repeat 2 95 0 1 875 396 0 0 0 chr5 38126979 38127023 -114410236 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 1 875 245 295 64 45 chr5 38127151 38127261 -114409998 + MIRm SINE MIR 75 186 -90 1 875 600 14 0 0 chr5 38127714 38127783 -114409476 + (TGG)n Simple_repeat Simple_repeat 1 69 0 1 875 206 281 103 37 chr5 38128008 38128115 -114409144 - MIRm SINE MIR -114 162 49 1 875 414 0 0 0 chr5 38128121 38128167 -114409092 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 875 31 44 0 0 chr5 38128243 38128288 -114408971 + AT_rich Low_complexity Low_complexity 1 45 0 1 875 405 0 0 0 chr5 38129194 38129239 -114408020 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 875 273 29 0 0 chr5 38129542 38129576 -114407683 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 875 447 19 0 0 chr5 38129576 38129627 -114407632 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 875 245 27 54 0 chr5 38129629 38129666 -114407593 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 875 192 77 0 0 chr5 38129680 38129706 -114407553 + (TA)n Simple_repeat Simple_repeat 1 26 0 1 875 667 283 34 23 chr5 38129768 38129945 -114407314 - B4A SINE B4 -113 179 1 2 875 319 262 73 27 chr5 38131389 38131499 -114405760 - MIRb SINE MIR -132 136 22 2 875 207 0 0 0 chr5 38131559 38131582 -114405677 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 875 1209 68 0 7 chr5 38131582 38131721 -114405538 - B1_Mus1 SINE Alu -9 139 1 2 875 265 321 0 12 chr5 38132449 38132534 -114404725 - MLT1C LTR MaLR -350 117 34 2 875 648 224 290 32 chr5 38133461 38133682 -114403577 - B4A SINE B4 -14 278 1 2 875 533 349 127 35 chr5 38133912 38134251 -114403008 + MLT2B1 LTR ERVL 65 434 -86 2 875 198 258 0 0 chr5 38134256 38134318 -114402941 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 875 395 286 35 18 chr5 38134336 38134450 -114402809 + L2b LINE L2 2705 2820 -599 2 875 258 333 287 0 chr5 38134454 38134562 -114402697 + RSINE1 SINE B4 10 148 -17 2 875 384 22 0 0 chr5 38134565 38134610 -114402649 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 875 215 305 64 92 chr5 38134781 38134922 -114402337 + L2b LINE L2 3225 3361 -14 2 875 303 203 0 0 chr5 38135135 38135204 -114402055 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 875 881 230 88 153 chr5 38135912 38136277 -114400982 + MTE2a LTR MaLR 1 341 -38 2 875 2012 194 63 5 chr5 38136453 38136847 -114400412 - MTC LTR MaLR -1 420 4 2 875 456 253 58 105 chr5 38137233 38137405 -114399854 + RSINE1 SINE B4 2 165 0 2 875 549 172 216 0 chr5 38137424 38137540 -114399719 - B1_Mur2 SINE Alu -5 144 4 2 875 292 221 132 0 chr5 38137771 38137839 -114399420 + PB1D7 SINE Alu 43 119 -1 2 875 4280 141 153 36 chr5 38137850 38137945 -114399314 + RLTR25B LTR ERVK 1 116 -912 2 875 318 26 0 0 chr5 38137945 38137984 -114399275 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 875 4280 141 153 36 chr5 38137984 38138748 -114398511 + RLTR25B LTR ERVK 117 961 -67 2 875 4196 90 13 18 chr5 38138750 38138768 -114398491 - Lx3_Mus LINE L1 0 7009 6990 2 875 201 74 0 0 chr5 38138768 38138795 -114398464 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 875 4196 90 13 18 chr5 38138795 38139375 -114397884 - Lx3_Mus LINE L1 -20 6989 6414 2 875 242 321 96 21 chr5 38139626 38139814 -114397445 - L1MA8 LINE L1 -65 6226 6025 2 875 703 239 7 7 chr5 38139842 38139977 -114397282 - RSINE1 SINE B4 -7 158 24 2 875 2603 136 36 19 chr5 38140022 38140435 -114396824 - MTC LTR MaLR 0 421 2 2 875 3405 120 47 15 chr5 38140595 38141126 -114396133 + Lx2 LINE L1 6450 6997 0 2 875 324 48 0 0 chr5 38141857 38141899 -114395360 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 876 190 239 22 0 chr5 38142744 38142790 -114394469 + MIR SINE MIR 116 162 -100 2 876 226 348 21 32 chr5 38144260 38144355 -114392904 + L2c LINE L2 3294 3387 0 2 876 578 280 28 22 chr5 38144963 38145142 -114392117 - MER20 DNA MER1_type -4 215 36 2 876 240 360 13 0 chr5 38145357 38145432 -114391827 - MIR SINE MIR -57 151 76 2 876 598 238 132 90 chr5 38147281 38147470 -114389789 - B3A SINE B2 -1 197 1 2 876 454 222 49 41 chr5 38147795 38147917 -114389342 + B1F1 SINE Alu 18 140 -9 2 876 654 264 87 81 chr5 38147994 38148142 -114389117 + B3A SINE B2 6 153 -42 2 876 231 114 0 0 chr5 38148142 38148177 -114389082 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 876 408 264 87 81 chr5 38148177 38148189 -114389070 + B2_Mm2 SINE B2 154 166 -29 2 876 191 296 99 14 chr5 38149633 38149750 -114387509 - MIR3 SINE MIR -21 187 65 2 876 7003 153 25 6 chr5 38149839 38151090 -114386169 + Lx3C LINE L1 5681 6954 -22 2 876 349 288 26 7 chr5 38151106 38151260 -114385999 - L1_Mur3 LINE L1 -2481 3399 3243 2 876 450 0 0 0 chr5 38151262 38151312 -114385947 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 876 25 31 0 0 chr5 38151344 38151376 -114385883 + AT_rich Low_complexity Low_complexity 1 32 0 2 876 530 283 129 50 chr5 38151387 38151685 -114385574 + L1MA5 LINE L1 4571 4897 -1246 2 876 1508 78 0 5 chr5 38151685 38151877 -114385382 + B2_Mm2 SINE B2 3 193 -2 2 876 530 283 129 50 chr5 38151877 38151976 -114385283 + L1MA5 LINE L1 4898 5006 -1137 2 876 675 281 58 15 chr5 38151976 38152182 -114385077 + B3 SINE B2 2 216 0 2 876 530 283 129 50 chr5 38152182 38152226 -114385033 + L1MA5 LINE L1 5007 5048 -1095 2 876 1216 54 7 0 chr5 38152229 38152376 -114384883 + B1_Mus1 SINE Alu 1 148 0 2 876 23 33 0 0 chr5 38152376 38152406 -114384853 + AT_rich Low_complexity Low_complexity 1 30 0 2 876 366 23 0 0 chr5 38152484 38152527 -114384732 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 876 339 25 0 0 chr5 38152527 38152566 -114384693 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 876 235 276 0 0 chr5 38152619 38152677 -114384582 + L1MA5 LINE L1 5875 5932 -368 2 876 311 303 73 22 chr5 38152887 38153066 -114384193 + L1MA6 LINE L1 5865 6052 -239 2 876 794 326 32 50 chr5 38153801 38154079 -114383180 + B4A SINE B4 2 274 -18 2 876 519 261 95 1 chr5 38154186 38154334 -114382925 + B3 SINE B2 2 161 -55 2 876 315 0 0 0 chr5 38154334 38154369 -114382890 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 876 297 313 57 57 chr5 38154369 38154413 -114382846 + B2_Mm2 SINE B2 152 193 -2 2 876 207 0 0 0 chr5 38154717 38154740 -114382519 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 876 1173 52 0 0 chr5 38154740 38154876 -114382383 - B1_Mm SINE Alu -9 138 3 2 876 710 266 37 10 chr5 38155265 38155292 -114381967 - B3A SINE B2 0 216 186 2 876 468 0 0 0 chr5 38155292 38155344 -114381915 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 876 710 261 19 6 chr5 38155344 38155493 -114381766 - B3A SINE B2 -13 185 35 2 876 198 0 0 0 chr5 38155540 38155562 -114381697 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 876 1103 90 0 7 chr5 38155562 38155708 -114381551 - B1_Mus1 SINE Alu -3 145 1 2 876 612 287 68 96 chr5 38155744 38156130 -114381129 + L1ME2 LINE L1 3900 4292 -1854 2 876 310 309 28 21 chr5 38156130 38156272 -114380987 + B1F SINE Alu 1 143 -6 2 876 334 274 14 0 chr5 38156278 38156351 -114380908 + ID4_ SINE ID 1 74 -9 2 876 612 285 69 95 chr5 38156351 38156480 -114380779 + L1ME2 LINE L1 4293 4408 -1738 2 876 627 305 50 29 chr5 38156483 38156763 -114380496 + B4A SINE B4 1 286 -6 2 876 546 349 54 37 chr5 38156845 38157249 -114380010 + L1ME2 LINE L1 4616 5025 -1121 2 876 484 273 121 90 chr5 38157249 38157595 -114379664 - ORR1E LTR MaLR -2 357 1 2 876 546 366 36 29 chr5 38157595 38157761 -114379498 + L1ME2 LINE L1 5026 5196 -950 2 876 652 329 2 2 chr5 38157829 38158011 -114379248 + B3A SINE B2 1 183 -33 2 876 279 157 43 0 chr5 38158013 38158083 -114379176 + GA-rich Low_complexity Low_complexity 2 74 0 2 876 552 15 0 0 chr5 38158169 38158234 -114379025 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 876 246 287 66 7 chr5 38158265 38158441 -114378818 + L1ME2 LINE L1 5421 5608 -725 2 876 629 326 30 55 chr5 38158454 38158782 -114378477 + L1ME2 LINE L1 5684 6003 -176 2 876 791 248 51 63 chr5 38158793 38159124 -114378135 + L1MA6 LINE L1 5926 6252 -48 2 876 805 256 55 15 chr5 38159125 38159327 -114377932 + B3 SINE B2 1 210 -6 2 876 192 214 65 97 chr5 38160890 38160952 -114376307 - MER5A DNA MER1_type -117 72 13 2 876 675 274 6 72 chr5 38160977 38161158 -114376101 + B4 SINE B4 116 284 -8 2 876 276 318 0 0 chr5 38161593 38161681 -114375578 + MER53 DNA hAT 11 98 -95 2 876 2084 175 73 13 chr5 38162708 38163090 -114374169 + MTB_Mm LTR MaLR 1 405 -2 2 876 926 242 97 160 chr5 38163097 38163529 -114373730 - MTD LTR MaLR -14 405 1 2 876 240 167 0 0 chr5 38164497 38164545 -114372714 + GA-rich Low_complexity Low_complexity 5 52 0 2 876 947 140 0 27 chr5 38164751 38164898 -114372361 - B1_Mus1 SINE Alu -5 143 1 2 876 227 293 35 35 chr5 38165013 38165098 -114372161 - MIRb SINE MIR -71 197 113 2 876 665 275 154 8 chr5 38165558 38165811 -114371448 + B4 SINE B4 1 290 -2 2 876 1368 74 31 16 chr5 38166074 38166266 -114370993 - B2_Mm2 SINE B2 0 195 1 2 876 345 47 0 0 chr5 38166762 38166805 -114370454 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 876 606 272 36 42 chr5 38167809 38168001 -114369258 - B3A SINE B2 -6 192 2 2 876 340 302 116 30 chr5 38168059 38168257 -114369002 + MER45B DNA Tip100 104 318 -722 2 876 736 172 59 15 chr5 38168476 38168612 -114368647 + B1_Mur2 SINE Alu 1 142 -7 2 876 1247 98 16 0 chr5 38168623 38168807 -114368452 + B2_Mm2 SINE B2 5 191 -4 2 876 450 266 108 39 chr5 38169030 38169291 -114367968 - L1MA9 LINE L1 -212 6079 5801 2 876 386 224 9 67 chr5 38169287 38169392 -114367867 - L1M1 LINE L1 -530 5770 5672 2 876 593 175 117 0 chr5 38169422 38169542 -114367717 + B1_Mus1 SINE Alu 2 135 -13 2 876 1046 115 0 6 chr5 38169545 38169711 -114367548 + (GGAA)n Simple_repeat Simple_repeat 4 168 0 2 876 1119 23 16 55 chr5 38169714 38169896 -114367363 + (GGGAA)n Simple_repeat Simple_repeat 3 177 0 2 876 696 75 0 0 chr5 38169896 38169990 -114367269 - B2_Mm2 SINE B2 -97 98 5 2 876 425 113 0 0 chr5 38170001 38170063 -114367196 - B1_Mur2 SINE Alu -7 142 81 2 876 1141 53 27 35 chr5 38170063 38170319 -114366940 + (GGGAA)n Simple_repeat Simple_repeat 1 253 0 2 876 645 247 7 0 chr5 38170329 38170475 -114366784 + B3A SINE B2 2 148 -50 2 876 207 0 0 0 chr5 38170475 38170498 -114366761 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 876 780 150 0 36 chr5 38170498 38170636 -114366623 + B1_Mur3 SINE Alu 4 136 -13 2 876 279 0 0 0 chr5 38170636 38170667 -114366592 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 2 876 865 226 44 0 chr5 38170681 38170885 -114366374 + B3 SINE B2 4 216 0 2 876 576 111 28 0 chr5 38171195 38171303 -114365956 + (TGGA)n Simple_repeat Simple_repeat 3 113 0 2 876 1704 196 28 31 chr5 38171674 38172064 -114365195 - Lx4B LINE L1 -4 7054 6666 2 876 265 308 67 25 chr5 38172440 38172560 -114364699 - L2a LINE L2 -14 3412 3288 2 876 781 290 55 0 chr5 38172754 38172954 -114364305 + ORR1E LTR MaLR 31 241 -118 2 876 694 174 2 29 chr5 38172990 38173126 -114364133 + B1_Mus2 SINE Alu 16 147 0 2 876 937 203 36 51 chr5 38173354 38173593 -114363666 + MTD LTR MaLR 3 218 -201 2 876 288 0 0 0 chr5 38174960 38174992 -114362267 + (G)n Simple_repeat Simple_repeat 1 32 0 3 876 251 254 28 14 chr5 38175732 38175804 -114361455 + MIRb SINE MIR 101 173 -95 3 876 247 330 137 22 chr5 38177103 38177329 -114359930 + LTR16C LTR ERVL 50 301 -188 3 876 1164 48 0 7 chr5 38177331 38177479 -114359780 + B1_Mus2 SINE Alu 1 147 0 3 876 3078 146 15 8 chr5 38177984 38178508 -114358751 - RLTR11A LTR ERVK 0 528 1 3 876 4566 211 172 120 chr5 38178509 38180719 -114356540 - MYSERV16_I-int LTR ERVK -2 2324 1 3 876 1552 26 0 35 chr5 38180910 38181110 -114356149 - B2_Mm1a SINE B2 0 193 1 3 876 489 246 42 17 chr5 38181119 38181239 -114356020 - B1_Mur4 SINE Alu -6 144 22 3 876 352 205 233 53 chr5 38181557 38181763 -114355496 - MYSERV6-int LTR ERVK -2285 6674 6432 3 876 909 28 0 0 chr5 38185626 38185734 -114351525 + (TC)n Simple_repeat Simple_repeat 1 108 0 3 876 558 0 0 0 chr5 38186517 38186579 -114350680 + (GTTTG)n Simple_repeat Simple_repeat 3 64 0 3 876 444 308 50 19 chr5 38187153 38187312 -114349947 - MER102a DNA MER1_type -122 208 45 3 876 423 279 109 10 chr5 38187839 38188031 -114349228 - ID_B1 SINE B4 -13 211 1 3 876 440 231 9 27 chr5 38189302 38189413 -114347846 - MLT1A1 LTR MaLR -4 404 296 3 876 401 123 27 0 chr5 38189426 38189499 -114347760 + (TATTG)n Simple_repeat Simple_repeat 3 77 0 3 876 450 0 0 0 chr5 38189715 38189765 -114347494 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 876 477 0 0 0 chr5 38189765 38189817 -114347442 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 876 446 273 190 8 chr5 38190537 38190795 -114346464 - MLT1A0 LTR MaLR 0 365 61 3 876 704 313 111 8 chr5 38190929 38191164 -114346095 - MTEa LTR MaLR -88 291 33 3 876 275 324 83 14 chr5 38191632 38191780 -114345479 - L2b LINE L2 0 3387 3243 3 876 273 336 11 23 chr5 38192517 38192658 -114344601 + MLT1A LTR MaLR 232 384 -24 3 876 189 0 0 0 chr5 38192660 38192681 -114344578 + (A)n Simple_repeat Simple_repeat 1 21 0 3 876 987 244 88 9 chr5 38193641 38193959 -114343300 + Lx9 LINE L1 7280 7622 -22 3 876 444 256 39 12 chr5 38194041 38194218 -114343041 + L1_Mur3 LINE L1 3485 3660 -2220 3 876 1795 168 123 6 chr5 38194308 38194673 -114342586 + MTC LTR MaLR 5 412 -9 3 876 830 221 9 32 chr5 38194676 38194914 -114342345 + L1_Mur3 LINE L1 3716 3970 -2170 3 876 469 321 32 5 chr5 38195003 38195191 -114342068 - MLT1D LTR MaLR -180 325 133 3 876 207 0 0 0 chr5 38195345 38195368 -114341891 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 876 273 119 0 0 chr5 38195388 38195430 -114341829 + (AGGGGG)n Simple_repeat Simple_repeat 2 43 0 3 876 267 31 0 0 chr5 38195620 38195652 -114341607 + (A)n Simple_repeat Simple_repeat 1 32 0 3 876 216 97 0 0 chr5 38195956 38195987 -114341272 + (A)n Simple_repeat Simple_repeat 1 31 0 3 876 758 272 34 51 chr5 38196264 38196500 -114340759 + B4A SINE B4 1 232 -60 3 876 361 313 23 38 chr5 38196504 38196637 -114340622 + RSINE1 SINE B4 9 139 -26 3 876 408 40 0 0 chr5 38196638 38196688 -114340571 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 876 1434 256 66 0 chr5 38197263 38197627 -114339632 - MTD LTR MaLR -15 404 17 3 876 734 139 0 0 chr5 38197639 38197768 -114339491 - BC1_Mm scRNA scRNA -23 129 1 3 876 243 173 0 0 chr5 38197971 38198023 -114339236 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 3 876 191 114 0 28 chr5 38198020 38198056 -114339203 + (TTTTC)n Simple_repeat Simple_repeat 4 38 0 3 876 309 253 60 48 chr5 38198062 38198145 -114339114 - B1F2 SINE Alu -56 93 10 3 876 21 0 0 0 chr5 38198732 38198753 -114338506 + AT_rich Low_complexity Low_complexity 1 21 0 3 876 550 260 6 62 chr5 38199114 38199274 -114337985 + RSINE1 SINE B4 7 157 -8 3 876 2815 142 30 10 chr5 38199327 38199826 -114337433 + RLTR11A LTR ERVK 1 509 -19 3 876 579 290 59 108 chr5 38199826 38200270 -114336989 + RMER10A LTR ERVL 3 424 -18 3 876 218 228 0 17 chr5 38200500 38200558 -114336701 + B3A SINE B2 67 123 -75 3 876 214 205 0 0 chr5 38201060 38201099 -114336160 + A-rich Low_complexity Low_complexity 1 39 0 3 876 654 13 0 0 chr5 38202205 38202280 -114334979 + (GAA)n Simple_repeat Simple_repeat 2 76 0 3 876 892 169 0 11 chr5 38202280 38202460 -114334799 + GA-rich Low_complexity Low_complexity 1 178 0 3 876 226 234 0 163 chr5 38203207 38203299 -114333960 - ORR1E LTR MaLR -162 197 121 3 876 212 350 60 0 chr5 38203362 38203462 -114333797 + L2 LINE L2 2813 2918 -501 3 876 881 233 48 10 chr5 38203515 38203723 -114333536 + B3 SINE B2 1 216 0 3 876 719 276 86 26 chr5 38203736 38203970 -114333289 + B4A SINE B4 43 290 -2 3 876 220 294 0 0 chr5 38203970 38204021 -114333238 + (CATA)n Simple_repeat Simple_repeat 3 53 0 3 876 275 293 49 0 chr5 38204079 38204161 -114333098 + L2 LINE L2 2989 3074 -345 3 876 296 221 163 81 chr5 38204211 38204334 -114332925 + MTEa LTR MaLR 228 360 -19 3 876 332 275 22 0 chr5 38204552 38204643 -114332616 + PB1D10 SINE Alu 25 117 0 3 876 201 158 0 26 chr5 38205469 38205508 -114331751 + C-rich Low_complexity Low_complexity 4 41 0 3 876 204 254 55 0 chr5 38207120 38207175 -114330084 - MIRm SINE MIR -132 144 87 3 876 27 81 0 0 chr5 38211737 38211799 -114325460 + AT_rich Low_complexity Low_complexity 1 62 0 3 876 213 94 0 0 chr5 38211887 38211919 -114325340 + (T)n Simple_repeat Simple_repeat 1 32 0 3 876 198 313 33 19 chr5 38212159 38212303 -114324956 + MIRm SINE MIR 50 193 -15 3 876 23 54 0 0 chr5 38215018 38215055 -114322204 + GC_rich Low_complexity Low_complexity 1 37 0 3 876 270 0 0 0 chr5 38216849 38216879 -114320380 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 3 876 228 295 20 69 chr5 38220061 38220163 -114317096 + LTR87 LTR ERVL? 384 480 -144 3 876 209 278 0 0 chr5 38220494 38220548 -114316711 - MIR SINE MIR -92 116 63 3 876 547 253 103 49 chr5 38220962 38221113 -114316146 + B3 SINE B2 2 156 -60 3 876 411 83 0 0 chr5 38221113 38221173 -114316086 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 876 547 253 103 49 chr5 38221173 38221225 -114316034 + B3 SINE B2 157 216 0 3 876 1658 21 0 0 chr5 38221606 38221799 -114315460 - B2_Mm1a SINE B2 0 193 1 3 876 293 282 48 31 chr5 38222952 38223109 -114314150 - MIRc SINE MIR -115 161 7 3 876 259 291 51 0 chr5 38223858 38223937 -114313322 + PB1D10 SINE Alu 35 117 0 3 876 1022 212 14 42 chr5 38224617 38224834 -114312425 - ID_B1 SINE B4 -9 215 5 3 876 882 218 72 10 chr5 38224876 38225071 -114312188 - B3 SINE B2 -9 207 1 3 876 692 159 109 36 chr5 38225102 38225239 -114312020 - B1_Mur2 SINE Alu 0 149 3 3 876 207 279 0 47 chr5 38225951 38226015 -114311244 + G-rich Low_complexity Low_complexity 1 61 0 3 876 915 318 107 17 chr5 38226242 38226661 -114310598 - MLT1C LTR MaLR -10 457 1 3 876 1058 14 0 56 chr5 38226726 38226959 -114310300 + (GA)n Simple_repeat Simple_repeat 1 219 0 3 876 245 321 14 28 chr5 38228131 38228275 -114308984 + (TCCA)n Simple_repeat Simple_repeat 1 142 0 3 876 247 373 11 38 chr5 38228209 38228393 -114308866 + (CCCA)n Simple_repeat Simple_repeat 2 180 0 3 876 377 295 24 18 chr5 38228339 38228508 -114308751 + (TCCA)n Simple_repeat Simple_repeat 3 172 0 3 876 852 264 54 10 chr5 38229865 38230068 -114307191 + B3 SINE B2 5 216 0 3 876 378 252 40 7 chr5 38230717 38230827 -114306432 + PB1D10 SINE Alu 1 120 0 3 876 317 246 40 23 chr5 38231076 38231251 -114306008 + CT-rich Low_complexity Low_complexity 1 178 0 3 876 497 143 26 18 chr5 38231208 38231322 -114305937 + C-rich Low_complexity Low_complexity 1 115 0 3 876 694 256 77 0 chr5 38231329 38231536 -114305723 - ID_B1 SINE B4 0 224 2 3 876 300 265 70 20 chr5 38231848 38231948 -114305311 + L1MC LINE L1 4978 5082 -1064 3 876 570 271 13 89 chr5 38231954 38232230 -114305029 - ORR1D2 LTR MaLR -3 371 120 3 876 470 291 94 22 chr5 38232370 38232637 -114304622 - L1MC LINE L1 -1565 4581 4296 3 876 288 0 0 0 chr5 38232690 38232722 -114304537 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 876 423 0 0 0 chr5 38232722 38232768 -114304491 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 876 1441 232 50 30 chr5 38233738 38233764 -114303495 - ORR1E LTR MaLR -12 347 326 3 876 2357 164 10 23 chr5 38233764 38234163 -114303096 + ORR1B1 LTR MaLR 1 394 0 3 876 1441 232 50 30 chr5 38234163 38234473 -114302786 - ORR1E LTR MaLR -34 325 4 3 876 444 332 78 31 chr5 38234608 38234864 -114302395 - MLT1B LTR MaLR -79 311 22 3 876 2258 132 25 5 chr5 38235191 38235558 -114301701 - ORR1C1 LTR MaLR -4 374 1 3 876 633 128 0 0 chr5 38235578 38235680 -114301579 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 3 876 461 278 53 6 chr5 38236292 38236462 -114300797 + GA-rich Low_complexity Low_complexity 1 178 0 3 876 203 296 37 0 chr5 38236921 38237002 -114300257 - L2c LINE L2 -192 3195 3112 3 876 239 292 176 22 chr5 38237159 38237341 -114299918 - MLT1C LTR MaLR -205 262 53 3 876 657 0 0 0 chr5 38237874 38237947 -114299312 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 3 876 252 0 0 0 chr5 38237947 38237975 -114299284 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 876 441 0 0 0 chr5 38237975 38238024 -114299235 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 876 412 280 82 8 chr5 38238363 38238499 -114298760 - PB1D10 SINE Alu -1 146 1 3 876 304 265 7 7 chr5 38238579 38238716 -114298543 + (TA)n Simple_repeat Simple_repeat 1 137 0 3 876 317 333 8 8 chr5 38238737 38238858 -114298401 + (TAGA)n Simple_repeat Simple_repeat 1 121 0 3 876 531 288 104 50 chr5 38238862 38239140 -114298119 - MTEa LTR MaLR -68 311 19 3 876 264 313 16 87 chr5 38239882 38240008 -114297251 - MIRm SINE MIR -135 141 25 4 876 200 229 0 40 chr5 38240073 38240123 -114297136 - MIRc SINE MIR -140 128 81 4 876 199 219 44 59 chr5 38240855 38240923 -114296336 - MIRb SINE MIR -146 122 56 4 876 840 99 0 0 chr5 38241015 38241157 -114296102 + (TG)n Simple_repeat Simple_repeat 2 143 0 4 876 435 211 0 0 chr5 38241185 38241261 -114295998 + B3A SINE B2 2 77 -121 4 876 277 208 40 6 chr5 38241355 38241529 -114295730 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 876 350 213 13 26 chr5 38241550 38241627 -114295632 + HAL1-3A_ME LINE L1 1977 2052 -806 4 876 228 35 0 0 chr5 38241689 38241718 -114295541 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 876 247 236 39 77 chr5 38242001 38242079 -114295180 + MIRc SINE MIR 81 155 -113 4 876 740 226 101 20 chr5 38244707 38244742 -114292517 - B3 SINE B2 -1 215 175 4 876 942 35 0 0 chr5 38244742 38244856 -114292403 + (CATATA)n Simple_repeat Simple_repeat 5 118 0 4 876 740 226 101 20 chr5 38244856 38245019 -114292240 - B3 SINE B2 -42 174 1 4 876 21 0 0 0 chr5 38245619 38245640 -114291619 + GC_rich Low_complexity Low_complexity 1 21 0 4 876 262 309 38 98 chr5 38245812 38245842 -114291417 + B4A SINE B4 53 121 -171 4 876 274 267 45 90 chr5 38245842 38245953 -114291306 + MT2B LTR ERVL 152 257 -344 4 876 678 122 0 80 chr5 38245876 38246001 -114291258 + B1_Mur3 SINE Alu 35 149 0 4 876 262 309 38 98 chr5 38245953 38245995 -114291264 + B4A SINE B4 122 224 -68 4 876 249 33 0 0 chr5 38246013 38246043 -114291216 + (GGA)n Simple_repeat Simple_repeat 3 32 0 4 876 1308 66 11 11 chr5 38246045 38246230 -114291029 - L1_Mus3 LINE L1 -3 6635 6451 4 876 514 276 94 42 chr5 38246286 38246498 -114290761 + ID_B1 SINE B4 2 224 0 4 876 234 0 0 0 chr5 38246514 38246540 -114290719 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 876 567 0 0 0 chr5 38246540 38246602 -114290657 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 876 338 22 0 42 chr5 38247101 38247149 -114290110 + (TCTG)n Simple_repeat Simple_repeat 3 48 0 4 876 1244 166 45 5 chr5 38247239 38247533 -114289726 - ORR1B1 LTR MaLR -8 386 1 4 876 360 131 35 35 chr5 38248081 38248168 -114289091 + GA-rich Low_complexity Low_complexity 3 89 0 4 876 400 189 40 45 chr5 38248550 38248727 -114288532 + GA-rich Low_complexity Low_complexity 3 178 0 4 876 273 306 48 8 chr5 38249625 38249750 -114287509 + MIRc SINE MIR 57 186 -82 4 876 267 31 0 0 chr5 38249775 38249807 -114287452 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 4 876 1033 273 93 22 chr5 38249837 38250159 -114287100 - MLT1A0 LTR MaLR 0 365 21 4 876 293 284 0 0 chr5 38250510 38250584 -114286675 - MIRc SINE MIR -127 141 68 4 876 187 224 164 0 chr5 38253812 38253879 -114283380 - MIRc SINE MIR -84 184 107 4 876 1011 149 0 0 chr5 38254849 38254997 -114282262 - B1_Mus1 SINE Alu 0 148 1 4 876 701 128 15 0 chr5 38255813 38255946 -114281313 + Lx2B LINE L1 6839 6973 -27 4 876 466 192 33 148 chr5 38255962 38256145 -114281114 + L1VL1 LINE L1 221 382 -6040 4 876 359 344 171 25 chr5 38256186 38256466 -114280793 - MLT1D LTR MaLR -160 345 25 4 876 816 193 32 131 chr5 38257281 38257502 -114279757 + B3 SINE B2 6 204 -12 4 876 285 238 652 43 chr5 38258120 38258255 -114279004 + B4A SINE B4 8 224 -68 4 876 1314 78 0 0 chr5 38258290 38258470 -114278789 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 876 739 235 132 11 chr5 38258472 38258661 -114278598 + B3 SINE B2 5 216 0 4 876 458 309 21 21 chr5 38258802 38258944 -114278315 + B1F1 SINE Alu 1 142 -7 4 876 424 238 0 0 chr5 38258962 38259042 -114278217 + ID4_ SINE ID 4 83 0 4 876 351 348 21 28 chr5 38259104 38259249 -114278010 + L1MD LINE L1 2574 2717 -3429 4 876 409 248 58 111 chr5 38259249 38259421 -114277838 + MT2B LTR ERVL 102 264 -337 4 876 779 123 0 0 chr5 38259330 38259444 -114277815 + B1_Mus1 SINE Alu 23 136 -12 4 876 477 0 0 0 chr5 38259444 38259497 -114277762 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 4 876 783 237 23 11 chr5 38259550 38259725 -114277534 - B3 SINE B2 -38 178 2 4 876 237 246 58 0 chr5 38259753 38259822 -114277437 - L1MEc LINE L1 -3759 2560 2488 4 876 422 316 211 0 chr5 38259887 38260143 -114277116 - L1MEc LINE L1 -4018 2382 2073 4 876 288 0 0 0 chr5 38260144 38260176 -114277083 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 876 648 200 88 20 chr5 38260189 38260337 -114276922 - B3A SINE B2 -39 159 2 4 876 354 177 139 0 chr5 38261134 38261213 -114276046 - 5S rRNA rRNA -31 90 1 4 876 295 319 27 40 chr5 38261278 38261500 -114275759 - L1MEc LINE L1 -5679 721 503 4 876 234 0 0 0 chr5 38261866 38261892 -114275367 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 4 876 198 0 0 0 chr5 38261904 38261926 -114275333 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4 876 775 221 14 0 chr5 38262238 38262378 -114274881 - B3A SINE B2 -55 143 2 4 876 212 129 0 0 chr5 38262558 38262589 -114274670 + B3 SINE B2 2 32 -184 4 876 414 0 0 0 chr5 38262670 38262716 -114274543 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 876 189 0 0 0 chr5 38262791 38262812 -114274447 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 876 231 201 7 54 chr5 38263022 38263169 -114274090 + GA-rich Low_complexity Low_complexity 1 140 0 4 876 191 36 0 35 chr5 38263248 38263277 -114273982 + (GGA)n Simple_repeat Simple_repeat 2 29 0 4 876 308 303 74 27 chr5 38263288 38263437 -114273822 + HAL1-3A_ME LINE L1 2284 2439 -419 4 876 396 290 21 96 chr5 38264182 38264369 -114272890 + HAL1-2a_MD LINE L1 2347 2519 -505 4 876 937 144 6 11 chr5 38264725 38264900 -114272359 + CT-rich Low_complexity Low_complexity 3 176 0 4 876 216 0 0 0 chr5 38264930 38264954 -114272305 + (A)n Simple_repeat Simple_repeat 1 24 0 4 876 268 284 111 8 chr5 38266912 38267029 -114270230 - MLT1A0 LTR MaLR 0 365 237 4 876 553 293 184 21 chr5 38267586 38267820 -114269439 + MLT1J LTR MaLR 38 309 -203 4 876 761 104 0 28 chr5 38267963 38268072 -114269187 - MTA_Mm LTR MaLR 0 396 291 4 876 7015 76 52 89 chr5 38268074 38268459 -114268800 + MTA_Mm-int LTR MaLR 1 393 -705 4 876 1693 21 0 5 chr5 38268459 38268652 -114268607 + B2_Mm1a SINE B2 2 193 0 4 876 7015 76 52 89 chr5 38268652 38269407 -114267852 + MTA_Mm-int LTR MaLR 394 1098 0 4 876 3091 52 34 8 chr5 38269407 38269793 -114267466 + MTA_Mm LTR MaLR 1 396 0 4 876 758 245 6 25 chr5 38269794 38269953 -114267306 + MTE2b LTR MaLR 91 246 -133 4 876 378 0 0 0 chr5 38270002 38270044 -114267215 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 876 468 261 92 8 chr5 38270045 38270176 -114267083 - RSINE1 SINE B4 -22 143 2 4 876 435 83 0 0 chr5 38271598 38271658 -114265601 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 876 267 295 35 9 chr5 38272245 38272358 -114264901 + (CATATA)n Simple_repeat Simple_repeat 1 116 0 4 876 184 282 0 17 chr5 38272364 38272483 -114264776 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 4 876 371 300 17 29 chr5 38272501 38272734 -114264525 + (TATATG)n Simple_repeat Simple_repeat 1 230 0 4 877 472 348 9 35 chr5 38273407 38273703 -114263556 + MLT1L LTR MaLR 110 462 -148 4 877 209 245 0 21 chr5 38274166 38274220 -114263039 - MIRc SINE MIR -95 173 118 4 877 909 201 128 16 chr5 38275324 38275427 -114261832 - MTD LTR MaLR -14 405 295 4 877 5889 40 0 1 chr5 38275427 38276121 -114261138 + L1Md_A LINE L1 5890 6582 0 4 877 909 196 137 13 chr5 38276121 38276258 -114261001 - MTD LTR MaLR -119 300 144 4 877 555 126 0 0 chr5 38276297 38276392 -114260867 + (TCCA)n Simple_repeat Simple_repeat 2 96 0 4 877 323 195 75 65 chr5 38276394 38276487 -114260772 - MTD LTR MaLR -276 143 50 4 877 7485 58 7 2 chr5 38276487 38277473 -114259786 + L1_Mus1 LINE L1 5592 6567 0 4 877 285 213 16 0 chr5 38277493 38277554 -114259705 - MTD LTR MaLR -353 66 5 4 877 181 232 265 12 chr5 38277588 38277671 -114259588 - MIRm SINE MIR -99 177 74 4 877 1080 119 0 0 chr5 38277706 38277874 -114259385 + (TGGA)n Simple_repeat Simple_repeat 1 168 0 4 877 280 242 16 0 chr5 38277902 38277964 -114259295 + MLT1H LTR MaLR 28 90 -354 4 877 252 0 0 0 chr5 38279124 38279152 -114258107 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 877 513 0 0 0 chr5 38279152 38279208 -114258051 + (GA)n Simple_repeat Simple_repeat 1 57 0 4 877 302 177 26 17 chr5 38279507 38279622 -114257637 + (ATGGTG)n Simple_repeat Simple_repeat 4 119 0 4 877 431 326 95 20 chr5 38279701 38279912 -114257347 - MIRb SINE MIR -11 265 33 4 877 530 109 10 0 chr5 38279997 38280098 -114257161 + (TC)n Simple_repeat Simple_repeat 2 103 0 4 877 189 74 0 0 chr5 38280099 38280126 -114257133 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 877 223 316 90 61 chr5 38280200 38280484 -114256775 + L2c LINE L2 2939 3233 -142 4 877 299 146 0 0 chr5 38280715 38280763 -114256496 + MTE2b LTR MaLR 332 379 0 4 877 453 236 0 11 chr5 38280835 38280929 -114256330 + B4A SINE B4 186 278 -14 4 877 360 181 0 77 chr5 38281000 38281078 -114256181 + PB1D10 SINE Alu 45 116 -1 4 877 266 293 0 0 chr5 38281091 38281166 -114256093 + ID4 SINE ID 3 77 -6 4 877 431 248 41 105 chr5 38281183 38281329 -114255930 + MLT1H LTR MaLR 82 257 -292 4 877 345 24 0 0 chr5 38281390 38281432 -114255827 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 877 225 244 68 114 chr5 38281437 38281525 -114255734 + MLT1H LTR MaLR 377 460 -29 4 877 323 0 48 0 chr5 38282609 38282651 -114254608 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 877 225 283 25 56 chr5 38282867 38282982 -114254277 + MIR SINE MIR 28 143 -119 4 877 286 174 160 21 chr5 38283883 38283977 -114253282 + PB1D9 SINE Alu 6 112 -8 4 877 181 268 27 27 chr5 38285534 38285607 -114251652 + MIR SINE MIR 81 153 -55 4 877 365 307 39 73 chr5 38286441 38286620 -114250639 - MIRb SINE MIR -92 176 4 4 877 786 156 253 11 chr5 38290228 38290410 -114246849 + URR1A DNA MER1_type 1 226 0 4 877 401 350 107 15 chr5 38291212 38291473 -114245786 + B4A SINE B4 1 285 -7 4 877 266 188 84 28 chr5 38292226 38292297 -114244962 - RLTR25B LTR ERVK -509 519 445 4 877 668 144 0 0 chr5 38292236 38292340 -114244919 - B1_Mus2 SINE Alu -43 104 1 5 877 378 143 0 0 chr5 38293758 38293821 -114243438 + (TTTTC)n Simple_repeat Simple_repeat 1 63 0 5 877 385 288 92 40 chr5 38294274 38294426 -114242833 + MER58A DNA MER1_type 1 160 -64 5 877 241 310 14 14 chr5 38294474 38294546 -114242713 + ID4 SINE ID 3 74 -9 5 877 1089 150 144 5 chr5 38295590 38295784 -114241475 + URR1B DNA MER1_type 5 225 0 5 877 269 324 0 0 chr5 38296564 38296632 -114240627 - RMER30 DNA MER1_type -133 69 2 5 877 200 297 0 30 chr5 38296751 38296817 -114240442 - MIR SINE MIR -119 143 80 5 877 326 270 0 13 chr5 38296889 38296964 -114240295 + RSINE1 SINE B4 53 126 -39 5 877 412 313 144 58 chr5 38297946 38298258 -114239001 + MT2A LTR ERVL 1 339 -194 5 877 271 211 0 0 chr5 38298310 38298362 -114238897 + Ricksha_c DNA MuDR 855 906 -1142 5 877 449 123 48 36 chr5 38298425 38298509 -114238750 - ORR1D2 LTR MaLR 0 370 286 5 877 1489 165 85 11 chr5 38298509 38298779 -114238480 - ORR1B2 LTR MaLR 0 367 78 5 877 977 213 118 15 chr5 38298829 38299091 -114238168 - ORR1D2 LTR MaLR -81 289 1 5 877 630 266 108 108 chr5 38299270 38299315 -114237944 - MTE2a LTR MaLR 0 379 335 5 877 920 196 79 20 chr5 38299315 38299518 -114237741 + B3 SINE B2 2 216 0 5 877 630 266 108 108 chr5 38299518 38299851 -114237408 - MTE2a LTR MaLR -45 334 3 5 877 741 180 199 77 chr5 38299918 38300099 -114237160 - B3 SINE B2 -12 204 2 5 877 234 0 0 0 chr5 38300325 38300351 -114236908 + (T)n Simple_repeat Simple_repeat 1 26 0 5 877 2379 164 124 14 chr5 38300883 38301450 -114235809 + RMER19B LTR ERVK 2 874 -28 5 877 1257 34 0 13 chr5 38301450 38301599 -114235660 + B1_Mm SINE Alu 1 147 0 5 877 267 31 0 0 chr5 38301599 38301631 -114235628 + (A)n Simple_repeat Simple_repeat 1 32 0 5 877 225 0 0 0 chr5 38302085 38302110 -114235149 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 5 877 2370 179 37 26 chr5 38302178 38302642 -114234617 + RLTR20A2 LTR ERVK 1 469 -109 5 877 837 215 136 0 chr5 38302661 38302852 -114234407 - B4A SINE B4 -32 260 44 5 877 1396 91 0 11 chr5 38302993 38303182 -114234077 + B2_Mm2 SINE B2 1 187 -8 5 877 544 287 116 11 chr5 38303222 38303412 -114233847 - LTR33A_ LTR ERVL -315 216 7 5 877 193 256 20 157 chr5 38303491 38303593 -114233666 + L2c LINE L2 3284 3371 -16 5 877 6871 76 65 8 chr5 38303835 38304889 -114232370 - L1_Mus4 LINE L1 -1 6635 5531 5 877 275 274 19 128 chr5 38305031 38305211 -114232048 - ORR1D1 LTR MaLR 0 419 243 5 877 193 175 77 31 chr5 38305748 38305813 -114231446 - MIRc SINE MIR -182 86 19 5 877 394 257 68 19 chr5 38306099 38306202 -114231057 - PB1D10 SINE Alu 0 117 10 5 877 2398 196 38 42 chr5 38306272 38306799 -114230460 - RLTR20C LTR ERVK -9 525 1 5 877 257 75 0 24 chr5 38306809 38306850 -114230409 + (TATG)n Simple_repeat Simple_repeat 4 43 0 5 877 693 180 6 11 chr5 38306859 38307033 -114230226 + (TA)n Simple_repeat Simple_repeat 2 174 0 5 877 208 135 0 0 chr5 38307325 38307362 -114229897 + (C)n Simple_repeat Simple_repeat 1 37 0 5 877 692 80 0 10 chr5 38308874 38308975 -114228284 + (GGAA)n Simple_repeat Simple_repeat 4 103 0 5 877 1730 26 0 0 chr5 38309860 38310053 -114227206 + B2_Mm1a SINE B2 1 193 0 5 877 804 220 17 92 chr5 38310244 38310484 -114226775 - ID_B1 SINE B4 0 224 3 5 877 204 167 0 0 chr5 38310614 38310644 -114226615 - MIRc SINE MIR -119 149 120 5 877 782 170 29 15 chr5 38310713 38310850 -114226409 + B1_Mur3 SINE Alu 5 143 -6 5 877 268 283 0 0 chr5 38311229 38311289 -114225970 + RSINE1 SINE B4 3 62 -103 5 877 920 113 0 8 chr5 38311289 38311541 -114225718 + (CA)n Simple_repeat Simple_repeat 1 249 0 5 877 361 266 123 77 chr5 38313132 38313352 -114223907 + RLTR14 LTR ERV1 153 382 0 5 877 215 191 154 31 chr5 38314287 38314352 -114222907 + PB1D7 SINE Alu 42 114 -6 5 877 1148 117 5 48 chr5 38314369 38314557 -114222702 + B3 SINE B2 37 216 0 5 877 1267 251 156 8 chr5 38314767 38315132 -114222127 - MTD LTR MaLR 0 419 1 5 877 530 0 106 0 chr5 38315241 38315326 -114221933 + (TTTTG)n Simple_repeat Simple_repeat 2 95 0 5 877 3170 8 43 0 chr5 38315591 38315943 -114221316 + IAPLTR1_Mm LTR ERVK 1 367 0 5 877 4696 59 41 14 chr5 38315943 38316581 -114220678 + IAPEz-int LTR ERVK 8 662 -5819 5 877 434 66 0 32 chr5 38316581 38316644 -114220615 + IAPEz-int LTR ERVK 1359 1419 -5062 5 877 1682 114 0 12 chr5 38316649 38316898 -114220361 + IAPEz-int LTR ERVK 2252 2497 -5183 5 877 889 88 24 0 chr5 38316893 38317018 -114220241 + IAPEz-int LTR ERVK 4783 4910 -2770 5 877 25292 18 4 2 chr5 38317018 38319967 -114217292 + IAPEz-int LTR ERVK 3525 6481 0 5 877 3170 8 43 0 chr5 38319967 38320319 -114216940 + IAPLTR1_Mm LTR ERVK 1 367 0 5 877 336 228 67 1 chr5 38321210 38321304 -114215955 + MLT2D LTR ERVL 113 209 -347 5 877 245 319 0 11 chr5 38321304 38321396 -114215863 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 5 877 673 231 88 100 chr5 38321401 38321641 -114215618 - RMER15 LTR ERVL 0 575 339 5 877 273 57 0 0 chr5 38321823 38321858 -114215401 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 877 534 227 0 0 chr5 38321858 38321990 -114215269 + GA-rich Low_complexity Low_complexity 5 136 0 5 877 285 51 0 0 chr5 38322456 38322495 -114214764 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 877 909 139 14 14 chr5 38322511 38322657 -114214602 - B1_Mur4 SINE Alu 0 150 5 5 877 553 284 108 30 chr5 38322663 38322866 -114214393 - ID_B1 SINE B4 -3 221 3 5 877 220 335 50 51 chr5 38323814 38323978 -114213281 + MIRc SINE MIR 6 152 -110 5 877 927 265 149 8 chr5 38324494 38324749 -114212510 + B4 SINE B4 2 292 0 5 877 210 37 0 0 chr5 38324847 38324874 -114212385 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 877 1005 201 106 58 chr5 38324874 38325320 -114211939 + RLTR20C LTR ERVK 3 575 -3 5 877 447 19 0 0 chr5 38325320 38325372 -114211887 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 877 201 252 9 19 chr5 38325799 38325904 -114211355 + GA-rich Low_complexity Low_complexity 3 106 0 5 877 468 0 0 0 chr5 38326559 38326611 -114210648 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 877 196 266 48 17 chr5 38326922 38327026 -114210233 - MIRc SINE MIR -84 178 77 5 877 257 224 77 66 chr5 38327184 38327275 -114209984 + B4 SINE B4 201 292 0 5 877 192 77 0 0 chr5 38327799 38327825 -114209434 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 877 715 288 23 70 chr5 38327860 38328118 -114209141 - B4A SINE B4 -46 246 1 5 877 382 279 165 66 chr5 38328118 38328257 -114209002 - MLT1C LTR MaLR -293 174 3 5 877 272 289 107 113 chr5 38328596 38328951 -114208308 + ORR1E LTR MaLR 4 356 -14 5 877 252 273 0 0 chr5 38329941 38330029 -114207230 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 877 252 256 128 76 chr5 38330120 38330248 -114207011 - MIR SINE MIR -62 146 8 5 877 502 304 162 24 chr5 38330788 38331041 -114206218 + B4A SINE B4 2 289 -3 5 877 498 33 0 0 chr5 38331083 38331143 -114206116 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 877 246 128 0 0 chr5 38331149 38331188 -114206071 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 877 199 350 135 24 chr5 38331963 38332089 -114205170 + MIRm SINE MIR 28 167 -109 5 877 722 69 10 0 chr5 38332254 38332355 -114204904 + (GA)n Simple_repeat Simple_repeat 1 102 0 5 877 413 347 79 40 chr5 38332374 38332779 -114204480 + HAL1 LINE L1 1289 1709 -798 5 877 827 293 42 35 chr5 38332803 38333086 -114204173 + B4 SINE B4 2 286 -6 5 877 213 222 18 53 chr5 38333099 38333156 -114204103 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 877 231 36 0 0 chr5 38333202 38333230 -114204029 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 5 877 200 309 43 14 chr5 38334115 38334184 -114203075 + MER5B DNA MER1_type 7 77 -101 5 877 201 314 0 91 chr5 38334128 38334205 -114203054 - MER5A DNA MER1_type -22 167 98 5 877 341 307 32 82 chr5 38335354 38335536 -114201723 - B4A SINE B4 0 292 107 5 877 219 309 110 32 chr5 38335564 38335718 -114201541 + MIR SINE MIR 16 181 -87 5 877 1558 227 81 23 chr5 38336726 38337122 -114200137 - MTD LTR MaLR 0 419 1 5 877 600 88 18 89 chr5 38338169 38338281 -114198978 - MTD LTR MaLR -315 104 1 5 877 588 171 11 29 chr5 38338305 38338400 -114198859 + (TGGA)n Simple_repeat Simple_repeat 2 95 0 5 877 2590 173 57 20 chr5 38338400 38338908 -114198351 - RLTR11A2 LTR ERVK 0 527 1 5 877 588 227 16 21 chr5 38338908 38339220 -114198039 + (TGGA)n Simple_repeat Simple_repeat 1 310 0 5 877 501 329 70 79 chr5 38339342 38339685 -114197574 + ORR1E LTR MaLR 11 350 -9 5 877 260 366 117 36 chr5 38340623 38340655 -114196604 + LTR16C LTR ERVL 106 136 -353 5 877 219 69 0 0 chr5 38340655 38340684 -114196575 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 877 260 366 117 36 chr5 38340684 38340985 -114196274 + LTR16C LTR ERVL 137 466 -23 5 877 415 292 23 17 chr5 38340985 38341159 -114196100 + (TG)n Simple_repeat Simple_repeat 2 176 0 5 877 518 218 0 32 chr5 38341179 38341364 -114195895 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 877 278 184 0 0 chr5 38341379 38341428 -114195831 + MLT2C1 LTR ERVL 515 563 0 5 877 217 139 0 27 chr5 38341673 38341710 -114195549 + G-rich Low_complexity Low_complexity 4 39 0 5 877 334 301 102 66 chr5 38342033 38342307 -114194952 - MLT1F1 LTR MaLR -220 349 66 5 877 412 276 100 16 chr5 38342814 38343003 -114194256 + B4 SINE B4 84 290 -2 5 877 288 0 0 0 chr5 38343038 38343070 -114194189 + (CATA)n Simple_repeat Simple_repeat 3 34 0 5 877 208 121 0 0 chr5 38343071 38343104 -114194155 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 877 201 74 0 0 chr5 38343673 38343700 -114193559 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 5 877 14100 52 14 1 chr5 38343702 38346050 -114191209 - L1Md_F2 LINE L1 -2 6580 4196 5 877 423 0 0 0 chr5 38346050 38346097 -114191162 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 877 180 0 0 0 chr5 38346097 38346116 -114191143 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 877 14100 53 11 1 chr5 38346116 38346283 -114190976 - L1Md_F2 LINE L1 -1688 4195 4030 5 877 321 265 8 41 chr5 38346642 38346764 -114190495 + GA-rich Low_complexity Low_complexity 2 119 0 6 877 331 138 0 54 chr5 38346775 38346867 -114190392 + GA-rich Low_complexity Low_complexity 4 90 0 6 877 215 106 43 0 chr5 38347414 38347461 -114189798 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 6 877 429 158 0 0 chr5 38347476 38347558 -114189701 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 877 1055 97 7 7 chr5 38347802 38347948 -114189311 - B1_Mus2 SINE Alu -1 146 1 6 877 2026 157 57 27 chr5 38348726 38349093 -114188166 - ORR1C1 LTR MaLR 0 378 1 6 877 545 199 7 0 chr5 38349105 38349241 -114188018 + (TGGA)n Simple_repeat Simple_repeat 3 139 0 6 877 284 362 0 8 chr5 38349265 38349393 -114187866 + (TGGA)n Simple_repeat Simple_repeat 1 127 0 6 877 360 0 0 0 chr5 38349396 38349436 -114187823 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 877 213 365 12 0 chr5 38349528 38349613 -114187646 + (TGGG)n Simple_repeat Simple_repeat 4 89 0 6 877 2517 145 37 12 chr5 38349726 38350132 -114187127 - MTC LTR MaLR -5 416 1 6 877 271 265 3 9 chr5 38350191 38350278 -114186981 + L1M3 LINE L1 5819 5904 -267 6 877 411 21 0 0 chr5 38350468 38350516 -114186743 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 877 1745 214 43 58 chr5 38350619 38351035 -114186224 + MTD LTR MaLR 5 414 -5 6 877 432 51 0 0 chr5 38351098 38351157 -114186102 + (TTTTG)n Simple_repeat Simple_repeat 3 61 0 6 877 422 157 29 10 chr5 38351200 38351303 -114185956 + GA-rich Low_complexity Low_complexity 5 109 0 6 877 670 186 26 0 chr5 38351348 38351461 -114185798 + B3 SINE B2 6 121 -95 6 877 885 178 0 0 chr5 38351900 38352046 -114185213 + B1_Mur4 SINE Alu 5 150 0 6 877 825 167 0 0 chr5 38352054 38352204 -114185055 + (TA)n Simple_repeat Simple_repeat 2 151 0 6 877 2305 244 31 13 chr5 38352232 38352787 -114184472 - Lx8 LINE L1 -572 6901 6337 6 877 301 316 103 0 chr5 38352876 38352993 -114184266 - Lx8 LINE L1 -1154 6319 6191 6 877 312 276 10 39 chr5 38353085 38353205 -114184054 + L1M5 LINE L1 5589 5711 -733 6 877 253 295 25 62 chr5 38353478 38353592 -114183667 - L2a LINE L2 -61 3365 3226 6 877 447 257 180 25 chr5 38354454 38354737 -114182522 - MLT1B LTR MaLR 0 390 64 6 877 2330 105 64 44 chr5 38356065 38356454 -114180805 - RMER10B LTR ERVL -1 397 1 6 877 2035 172 55 50 chr5 38357250 38357690 -114179569 + RMER10A LTR ERVL 1 442 0 6 877 267 250 100 22 chr5 38358312 38358402 -114178857 + MER5A DNA MER1_type 20 116 -73 6 877 374 237 32 0 chr5 38358457 38358550 -114178709 + MER5A1 DNA MER1_type 69 164 -2 6 877 298 303 51 42 chr5 38360863 38361048 -114176211 + MLT1C LTR MaLR 72 253 -137 6 877 319 288 151 27 chr5 38361109 38361276 -114175983 - MER34 LTR ERV1 -5 566 375 6 877 545 296 152 55 chr5 38361972 38362262 -114174997 + MER2 DNA MER2_type 7 324 -21 6 877 2150 195 45 15 chr5 38362472 38362872 -114174387 + MTC LTR MaLR 2 413 -8 6 877 1010 225 115 33 chr5 38363004 38363335 -114173924 + ORR1E LTR MaLR 1 358 -1 6 877 486 306 273 43 chr5 38363689 38364020 -114173239 - MLT1C LTR MaLR -6 461 55 6 877 180 333 16 0 chr5 38364059 38364122 -114173137 - L2 LINE L2 -679 2740 2677 6 877 23 0 0 0 chr5 38364254 38364277 -114172982 + AT_rich Low_complexity Low_complexity 1 23 0 6 877 180 295 55 33 chr5 38365019 38365110 -114172149 - L4 LINE RTE -807 1222 1130 6 877 193 181 13 0 chr5 38365123 38365167 -114172092 + MIR SINE MIR 84 133 -135 6 877 236 254 0 0 chr5 38365247 38365302 -114171957 + (CACCAT)n Simple_repeat Simple_repeat 6 60 0 6 877 280 185 253 24 chr5 38365498 38365581 -114171678 + MTEa LTR MaLR 274 375 -4 6 877 297 233 17 0 chr5 38365739 38365799 -114171460 + ID SINE ID 2 62 -162 6 877 627 217 118 42 chr5 38366493 38366637 -114170622 + ID_B1 SINE B4 62 216 -8 6 877 1101 215 148 0 chr5 38366957 38367213 -114170046 - MTD LTR MaLR 0 419 126 6 877 1312 259 92 9 chr5 38367214 38367549 -114169710 - ORR1D2 LTR MaLR -1 369 7 6 877 583 227 16 8 chr5 38367547 38367676 -114169583 - MTD LTR MaLR -280 139 10 6 877 935 141 0 26 chr5 38367679 38367832 -114169427 + B1_Mur4 SINE Alu 1 149 -1 6 877 193 286 62 52 chr5 38368573 38368669 -114168590 + MIRc SINE MIR 87 183 -85 6 877 275 250 14 14 chr5 38368777 38368846 -114168413 + MIRc SINE MIR 87 155 -113 6 877 552 280 64 27 chr5 38368846 38369033 -114168226 + B3A SINE B2 1 194 -4 6 877 575 140 190 17 chr5 38369060 38369176 -114168083 + B1_Mur2 SINE Alu 1 136 -13 6 877 495 0 0 0 chr5 38369177 38369232 -114168027 + (TAA)n Simple_repeat Simple_repeat 1 55 0 6 877 206 182 0 35 chr5 38369436 38369493 -114167766 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 6 877 419 255 29 0 chr5 38369526 38369628 -114167631 + ORR1E LTR MaLR 1 105 -254 6 877 484 279 33 0 chr5 38369812 38369934 -114167325 + ID_B1 SINE B4 82 207 -17 6 877 212 187 78 5 chr5 38369980 38370034 -114167225 - MIRc SINE MIR -138 124 64 6 877 405 0 0 0 chr5 38370055 38370100 -114167159 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 877 228 211 0 0 chr5 38370308 38370346 -114166913 + polypyrimidine Low_complexity Low_complexity 1 38 0 6 877 248 224 13 45 chr5 38370835 38370989 -114166270 + GA-rich Low_complexity Low_complexity 1 149 0 6 877 401 236 211 0 chr5 38371347 38371470 -114165789 + ID_B1 SINE B4 1 149 -75 6 877 556 50 0 24 chr5 38372387 38372469 -114164790 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 877 1772 148 48 22 chr5 38372519 38372831 -114164428 + ORR1B2 LTR MaLR 21 340 -27 6 877 1215 56 0 0 chr5 38372850 38372994 -114164265 - B1_Mm SINE Alu -2 145 2 6 877 597 267 30 18 chr5 38373023 38373187 -114164072 + B4 SINE B4 20 185 -107 6 877 349 295 200 10 chr5 38373531 38373949 -114163310 - L1M4 LINE L1 -553 5630 5148 6 877 361 343 86 25 chr5 38374001 38374246 -114163013 + L2c LINE L2 3024 3283 -104 6 877 360 293 107 22 chr5 38375248 38375426 -114161833 + L2a LINE L2 2966 3158 -268 6 877 248 296 39 58 chr5 38375538 38375642 -114161617 + L2a LINE L2 3325 3426 0 6 877 371 309 48 8 chr5 38376095 38376219 -114161040 - B4 SINE B4 -163 129 1 6 877 474 263 222 65 chr5 38377238 38377486 -114159773 - RMER15 LTR ERVL -14 561 275 6 877 438 322 39 10 chr5 38377966 38378173 -114159086 - Ricksha_c DNA MuDR -1248 800 588 6 877 402 256 65 83 chr5 38378377 38378594 -114158665 + L1M4 LINE L1 4550 4762 -1384 6 877 400 290 53 32 chr5 38378597 38378786 -114158473 + L1MB3 LINE L1 5926 6118 -65 6 877 1216 269 96 7 chr5 38378820 38379382 -114157877 + L1M4 LINE L1 4747 5371 -775 6 877 799 149 55 34 chr5 38379396 38379542 -114157717 + B1_Mur4 SINE Alu 2 150 0 6 877 281 145 26 26 chr5 38379555 38379633 -114157626 + GA-rich Low_complexity Low_complexity 2 79 0 6 877 335 258 143 12 chr5 38379688 38379849 -114157410 + L1M4 LINE L1 5464 5645 -533 6 877 423 275 104 89 chr5 38379961 38380300 -114156959 + ORR1E LTR MaLR 1 352 -27 6 877 306 0 0 0 chr5 38380300 38380334 -114156925 + (CAA)n Simple_repeat Simple_repeat 3 36 0 6 877 361 229 115 33 chr5 38380334 38380348 -114156911 + ORR1E LTR MaLR 353 377 -2 6 877 3768 148 98 17 chr5 38380505 38381165 -114156094 - RMER19B LTR ERVK -7 895 182 6 877 903 273 57 50 chr5 38381275 38381556 -114155703 + B4A SINE B4 6 288 -4 6 877 210 37 0 0 chr5 38381576 38381603 -114155656 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 877 318 269 55 46 chr5 38382290 38382399 -114154860 - MLT1G3 LTR MaLR -298 297 188 6 877 617 45 2 7 chr5 38383526 38383625 -114153634 + B1_Mus2 SINE Alu 54 150 0 6 877 261 83 0 0 chr5 38383625 38383661 -114153598 + (A)n Simple_repeat Simple_repeat 1 36 0 6 877 505 214 194 25 chr5 38383673 38383874 -114153385 + MLT1A0 LTR MaLR 131 365 0 6 877 199 233 138 57 chr5 38383968 38384091 -114153168 - MIRb SINE MIR -132 136 4 6 877 249 262 57 19 chr5 38384093 38384198 -114153061 + MIRb SINE MIR 46 154 -114 6 877 225 0 0 0 chr5 38384288 38384313 -114152946 + (A)n Simple_repeat Simple_repeat 1 25 0 6 877 437 251 30 18 chr5 38385307 38385436 -114151823 - PB1D9 SINE Alu 0 149 26 6 877 222 273 176 29 chr5 38385398 38385466 -114151793 - B4 SINE B4 -144 148 71 6 877 900 274 52 110 chr5 38385480 38385913 -114151346 + MTE2a LTR MaLR 3 406 -13 6 877 481 348 129 58 chr5 38386019 38386411 -114150848 + MLT1G1 LTR MaLR 160 579 0 6 877 397 284 80 76 chr5 38386412 38386703 -114150556 + MLT1L LTR MaLR 206 421 -91 6 877 380 134 239 0 chr5 38386876 38386943 -114150316 - ID4_ SINE ID 0 83 1 6 877 272 297 69 10 chr5 38386985 38387087 -114150172 - MIR SINE MIR -143 119 12 6 877 265 297 76 11 chr5 38387131 38387223 -114150036 + MIR SINE MIR 35 132 -76 6 877 205 304 0 0 chr5 38387713 38387769 -114149490 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 877 813 315 20 15 chr5 38387779 38387979 -114149280 - B4 SINE B4 -4 288 88 6 877 219 103 0 0 chr5 38387984 38388023 -114149236 + (A)n Simple_repeat Simple_repeat 1 39 0 6 877 1464 73 16 0 chr5 38388189 38388380 -114148879 + B2_Mm2 SINE B2 2 195 0 6 877 351 65 0 0 chr5 38388608 38388654 -114148605 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 877 195 293 15 141 chr5 38391067 38391202 -114146057 - MIRc SINE MIR -73 195 78 6 877 1169 64 0 0 chr5 38391378 38391519 -114145740 - B1_Mus1 SINE Alu -6 142 2 6 877 555 325 90 12 chr5 38391559 38391904 -114145355 - MLT1A LTR MaLR 0 374 3 6 877 240 143 0 0 chr5 38392696 38392738 -114144521 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 877 183 114 0 0 chr5 38392845 38392880 -114144379 + (T)n Simple_repeat Simple_repeat 1 35 0 6 877 484 306 66 28 chr5 38393830 38394061 -114143198 + MIR SINE MIR 15 250 -18 7 877 314 206 0 29 chr5 38394098 38394168 -114143091 + L2a LINE L2 3355 3422 -4 7 877 190 280 9 18 chr5 38394702 38394811 -114142448 + GA-rich Low_complexity Low_complexity 3 110 0 7 877 1033 110 6 6 chr5 38394824 38394997 -114142262 + (GGGA)n Simple_repeat Simple_repeat 2 174 0 7 877 310 299 137 63 chr5 38394997 38395268 -114141991 + MLT1C LTR MaLR 173 463 -4 7 877 242 262 129 65 chr5 38395513 38395668 -114141591 - Tigger5 DNA MER2_type -82 2324 2160 7 877 322 349 26 20 chr5 38395736 38395888 -114141371 - Tigger5 DNA MER2_type -2244 162 10 7 877 366 23 0 0 chr5 38396092 38396135 -114141124 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 877 632 268 19 31 chr5 38396138 38396300 -114140959 - RSINE1 SINE B4 0 165 6 7 877 204 283 0 19 chr5 38396321 38396375 -114140884 - L2b LINE L2 -14 3361 3309 7 877 528 16 0 0 chr5 38396573 38396634 -114140625 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 877 693 291 68 30 chr5 38397137 38397374 -114139885 + B4 SINE B4 1 246 -46 7 877 435 258 16 26 chr5 38397382 38397505 -114139754 + B3A SINE B2 2 128 -65 7 877 245 154 39 0 chr5 38397511 38397563 -114139696 + CT-rich Low_complexity Low_complexity 1 54 0 7 877 584 250 34 20 chr5 38399064 38399211 -114138048 + RSINE1 SINE B4 8 156 -9 7 877 789 253 50 20 chr5 38399264 38399388 -114137871 + B4A SINE B4 83 213 -79 7 877 575 27 14 0 chr5 38399388 38399461 -114137798 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 7 877 789 253 50 20 chr5 38399461 38399534 -114137725 + B4A SINE B4 214 286 -6 7 877 218 222 0 31 chr5 38399554 38399619 -114137640 + GA-rich Low_complexity Low_complexity 6 68 0 7 877 184 362 76 30 chr5 38399619 38399750 -114137509 + MER5A DNA MER1_type 14 150 -39 7 877 543 327 99 53 chr5 38399813 38399936 -114137323 + MLT1D LTR MaLR 5 122 -383 7 877 396 0 0 0 chr5 38399936 38399980 -114137279 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 877 240 35 0 0 chr5 38399980 38400009 -114137250 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 877 543 327 99 53 chr5 38400009 38400297 -114136962 + MLT1D LTR MaLR 123 435 -70 7 877 425 66 16 0 chr5 38400311 38400372 -114136887 + (TC)n Simple_repeat Simple_repeat 2 63 0 7 877 461 252 34 0 chr5 38400404 38400523 -114136736 - PB1 SINE Alu -4 123 1 7 877 865 265 51 0 chr5 38400624 38400820 -114136439 - ID_B1 SINE B4 -7 217 12 7 877 922 112 7 27 chr5 38400899 38401046 -114136213 - B1_Mus1 SINE Alu -1 147 4 7 877 218 200 0 0 chr5 38401163 38401203 -114136056 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 877 265 267 56 34 chr5 38401647 38401736 -114135523 + MLT1A1 LTR MaLR 318 408 0 7 877 856 149 189 22 chr5 38401917 38402102 -114135157 + B3 SINE B2 1 216 0 7 877 834 252 166 40 chr5 38402148 38402594 -114134665 + Lx8 LINE L1 6970 7471 -2 7 877 415 351 95 32 chr5 38402613 38403025 -114134234 + L1M5 LINE L1 2496 2933 -3213 7 877 360 0 0 0 chr5 38403028 38403068 -114134191 + (TAA)n Simple_repeat Simple_repeat 2 41 0 7 877 843 180 26 68 chr5 38403171 38403362 -114133897 - B3A SINE B2 -15 183 1 7 877 459 365 41 23 chr5 38403427 38403646 -114133613 + MER58A DNA MER1_type 1 223 -1 7 109 591 329 50 29 chr5 38403786 38404205 -114133054 + L1M5 LINE L1 4616 5043 -1103 7 878 800 251 6 11 chr5 38404338 38404515 -114132744 - Lx8 LINE L1 -133 7340 7165 7 878 539 298 146 40 chr5 38404577 38404731 -114132528 + L1MD2 LINE L1 5627 5823 -536 7 878 1861 203 134 62 chr5 38404731 38405292 -114131967 + MT2B LTR ERVL 1 601 0 7 878 539 298 146 40 chr5 38405292 38405487 -114131772 + L1MD2 LINE L1 5824 6013 -346 7 878 270 294 58 22 chr5 38405507 38405646 -114131613 + L1MD2 LINE L1 6103 6246 -113 7 878 346 228 10 115 chr5 38405647 38405751 -114131508 + MT2B LTR ERVL 165 257 -344 7 878 659 168 10 0 chr5 38405661 38405762 -114131497 + B1_Mur3 SINE Alu 14 115 -34 7 878 492 18 0 0 chr5 38405768 38405825 -114131434 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 878 231 298 70 114 chr5 38405888 38406089 -114131170 + MIRb SINE MIR 21 212 -56 7 878 386 286 202 16 chr5 38406858 38407046 -114130213 - ID_B1 SINE B4 -1 223 1 7 878 365 267 22 0 chr5 38407385 38407475 -114129784 + RSINE1 SINE B4 38 129 -36 7 878 221 196 107 0 chr5 38407857 38407913 -114129346 - MIR3 SINE MIR -36 172 111 7 878 528 294 118 75 chr5 38407951 38408300 -114128959 + MLT1A LTR MaLR 4 367 -7 7 878 919 259 66 66 chr5 38408588 38409013 -114128246 + ORSL-2b DNA Tip100 59 483 -25 7 878 515 269 61 24 chr5 38409711 38409875 -114127384 + ID_B1 SINE B4 21 190 -34 7 878 1617 111 0 9 chr5 38410104 38410332 -114126927 + URR1A DNA MER1_type 1 226 0 7 878 236 335 58 66 chr5 38410580 38410823 -114126436 + L1MC4 LINE L1 7288 7528 -514 7 878 1491 213 67 24 chr5 38410823 38411164 -114126095 - MTEa LTR MaLR 0 379 24 7 878 258 294 27 18 chr5 38411366 38411477 -114125782 + L1MC4 LINE L1 7524 7635 -407 7 878 356 180 16 0 chr5 38412254 38412315 -114124944 - URR1B DNA MER1_type -163 62 1 7 878 220 120 20 20 chr5 38412753 38412804 -114124455 + CT-rich Low_complexity Low_complexity 1 51 0 7 878 481 218 195 60 chr5 38412906 38413121 -114124138 + RMER13A LTR ERVK 96 339 -521 7 878 1148 83 7 0 chr5 38413612 38413757 -114123502 + B1_Mus1 SINE Alu 2 147 -1 7 878 1034 107 0 6 chr5 38413758 38413918 -114123341 + (GGAA)n Simple_repeat Simple_repeat 3 161 0 7 878 264 116 0 44 chr5 38414167 38414212 -114123047 + PB1D9 SINE Alu 17 59 -61 7 878 801 136 0 0 chr5 38414233 38414410 -114122849 + (GGGAGA)n Simple_repeat Simple_repeat 4 180 0 7 878 615 164 0 0 chr5 38414413 38414584 -114122675 + GA-rich Low_complexity Low_complexity 10 180 0 7 878 558 88 43 21 chr5 38414618 38414711 -114122548 + B1_Mur3 SINE Alu 42 136 -13 7 878 332 260 0 13 chr5 38415131 38415209 -114122050 + B1F SINE Alu 10 86 -63 7 878 244 175 0 66 chr5 38415346 38415407 -114121852 + GA-rich Low_complexity Low_complexity 5 61 0 7 878 214 256 0 0 chr5 38415586 38415629 -114121630 + (TGGA)n Simple_repeat Simple_repeat 1 43 0 7 878 263 102 0 48 chr5 38415654 38415716 -114121543 + T-rich Low_complexity Low_complexity 3 61 0 7 878 264 195 130 0 chr5 38416207 38416284 -114120975 + L2a LINE L2 3338 3424 -2 7 878 577 268 0 27 chr5 38416423 38416569 -114120690 + ID_B1 SINE B4 82 223 -1 7 878 399 361 14 7 chr5 38417641 38417786 -114119473 + MIR SINE MIR 29 174 -88 7 878 523 323 54 9 chr5 38419310 38419532 -114117727 - L3b LINE CR1 -159 323 92 7 878 186 43 0 0 chr5 38419869 38419892 -114117367 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 878 669 164 141 0 chr5 38419914 38420042 -114117217 - B1_Mus2 SINE Alu 0 147 2 7 878 299 325 39 100 chr5 38420379 38420509 -114116750 - B4 SINE B4 -114 178 57 7 878 255 333 11 11 chr5 38420645 38420733 -114116526 + PB1D10 SINE Alu 1 88 -29 7 878 198 143 0 0 chr5 38421167 38421202 -114116057 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 7 878 1347 98 6 0 chr5 38421206 38421389 -114115870 - B2_Mm1a SINE B2 -7 186 3 7 878 881 48 0 16 chr5 38421470 38421597 -114115662 - L1Md_F2 LINE L1 -1 6581 6457 7 878 2917 209 87 132 chr5 38421597 38422510 -114114749 - RMER19B LTR ERVK -30 872 1 7 878 669 258 96 114 chr5 38422510 38422819 -114114440 + MLT1A1 LTR MaLR 32 337 -71 7 878 823 273 49 122 chr5 38422819 38423228 -114114031 + MTE2a LTR MaLR 1 379 0 7 878 669 258 96 114 chr5 38423228 38423290 -114113969 + MLT1A1 LTR MaLR 338 396 -12 7 878 523 27 27 0 chr5 38423482 38423555 -114113704 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 878 380 257 177 0 chr5 38423682 38423795 -114113464 + MIR3 SINE MIR 72 204 -4 7 878 195 344 101 30 chr5 38425630 38425729 -114111530 - MIRc SINE MIR -143 125 20 7 878 446 278 164 19 chr5 38427398 38427611 -114109648 - MLT1D LTR MaLR 0 505 262 7 878 271 246 200 9 chr5 38428208 38428323 -114108936 - LTR85c LTR Gypsy? -594 229 93 7 878 678 58 0 0 chr5 38428368 38428455 -114108804 + (TC)n Simple_repeat Simple_repeat 2 88 0 7 878 1197 242 127 21 chr5 38428595 38429013 -114108246 - Charlie1b DNA MER1_type -2 521 60 7 878 695 243 86 83 chr5 38429110 38429437 -114107822 + Lx9 LINE L1 7297 7624 -20 7 878 1016 90 0 0 chr5 38429733 38429866 -114107393 + B1_Mus2 SINE Alu 5 137 -10 7 878 315 0 0 0 chr5 38429866 38429901 -114107358 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 7 878 192 255 126 45 chr5 38431311 38431422 -114105837 + L2c LINE L2 3268 3387 0 7 878 207 0 0 0 chr5 38431568 38431591 -114105668 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 878 283 293 79 13 chr5 38431595 38431671 -114105588 - Arthur1B DNA Tip100 -1144 81 1 7 878 221 328 194 16 chr5 38431683 38431697 -114105562 - B4A SINE B4 -52 240 95 7 878 559 227 0 0 chr5 38431697 38431807 -114105452 - PB1D9 SINE Alu -1 119 10 7 878 189 0 0 0 chr5 38431829 38431850 -114105409 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 878 299 320 33 44 chr5 38432210 38432393 -114104866 + Lx8 LINE L1 7259 7439 -34 7 878 1308 140 22 43 chr5 38432596 38432827 -114104432 - URR1A DNA MER1_type 0 226 1 7 878 815 77 34 27 chr5 38433040 38433187 -114104072 - RMER17B LTR ERVK -495 463 316 7 878 271 262 87 10 chr5 38433650 38433754 -114103505 - MER117 DNA MER1_type -76 121 10 7 878 273 344 25 44 chr5 38433800 38433958 -114103301 - MIR3 SINE MIR 0 208 54 7 878 859 204 5 65 chr5 38434020 38434219 -114103040 - B3A SINE B2 -4 194 8 7 878 299 231 147 0 chr5 38434283 38434386 -114102873 + MIRc SINE MIR 20 136 -140 7 878 190 250 243 27 chr5 38435008 38435119 -114102140 + MIR3 SINE MIR 30 164 -44 7 878 777 216 10 73 chr5 38435256 38435461 -114101798 - B3A SINE B2 -6 192 1 8 878 520 313 194 12 chr5 38435496 38435923 -114101336 + L2a LINE L2 2922 3426 0 8 878 186 286 129 12 chr5 38436820 38436905 -114100354 - L2a LINE L2 0 3426 3332 8 878 388 283 50 112 chr5 38437392 38437571 -114099688 - B4A SINE B4 0 292 125 8 878 8068 6 0 0 chr5 38437586 38438464 -114098795 - L1Md_T LINE L1 0 6582 5705 8 878 257 373 45 45 chr5 38438464 38438596 -114098663 - B4A SINE B4 -156 136 5 8 878 3282 225 85 32 chr5 38438563 38439432 -114097827 - RCHARR1 DNA MER1_type -4 970 56 8 878 862 277 43 97 chr5 38439458 38439830 -114097429 + ORR1E LTR MaLR 2 353 -6 8 878 493 263 111 28 chr5 38440692 38440872 -114096387 + MER2 DNA MER2_type 1 195 -150 8 878 840 168 21 0 chr5 38441316 38441459 -114095800 + B1F2 SINE Alu 4 149 0 8 878 312 372 129 36 chr5 38443218 38443527 -114093732 + L1M5 LINE L1 4366 4703 -1443 8 878 417 39 0 0 chr5 38444247 38444298 -114092961 + (TATG)n Simple_repeat Simple_repeat 2 52 0 8 878 699 187 104 0 chr5 38449072 38449206 -114088053 - B1_Mur2 SINE Alu 0 149 2 8 878 1189 63 0 0 chr5 38450039 38450181 -114087078 - B1_Mm SINE Alu -5 142 1 8 878 217 208 0 25 chr5 38453216 38453295 -114083964 + (TATG)n Simple_repeat Simple_repeat 2 78 0 8 878 361 289 67 103 chr5 38460398 38460622 -114076637 + MER20 DNA MER1_type 1 216 -3 8 878 182 0 0 97 chr5 38461301 38461332 -114075927 + (T)n Simple_repeat Simple_repeat 1 28 0 8 878 292 340 29 0 chr5 38461645 38461748 -114075511 + L2a LINE L2 2991 3096 -330 8 878 548 281 94 75 chr5 38461922 38462325 -114074934 - L1MD3 LINE L1 -279 5963 5552 8 878 306 0 0 0 chr5 38462495 38462529 -114074730 + (CATA)n Simple_repeat Simple_repeat 2 35 0 8 878 577 236 31 12 chr5 38462529 38462692 -114074567 + L1MB8 LINE L1 5803 5968 -210 8 878 233 261 62 0 chr5 38462751 38462816 -114074443 - L1MD3 LINE L1 -735 5598 5530 8 878 394 278 38 45 chr5 38462880 38463012 -114074247 + L1MC LINE L1 2533 2663 -3483 8 878 186 43 0 0 chr5 38463132 38463155 -114074104 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 8 878 341 271 128 23 chr5 38463242 38463459 -114073800 - L1MD3 LINE L1 -757 5422 5186 8 878 238 208 0 19 chr5 38464080 38464134 -114073125 - Charlie2b DNA MER1_type -17 2765 2713 8 878 486 146 0 0 chr5 38464171 38464253 -114073006 + (TA)n Simple_repeat Simple_repeat 1 82 0 8 878 908 34 8 0 chr5 38464277 38464395 -114072864 - B1_Mus1 SINE Alu 0 148 30 8 878 21 36 0 0 chr5 38467236 38467264 -114069995 + AT_rich Low_complexity Low_complexity 1 28 0 8 878 351 0 0 0 chr5 38469097 38469136 -114068123 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 878 257 260 72 72 chr5 38469386 38469552 -114067707 + MIRb SINE MIR 5 170 -98 8 878 357 222 214 0 chr5 38471321 38471438 -114065821 - MIR SINE MIR -25 237 96 8 878 242 226 250 0 chr5 38472267 38472351 -114064908 + B1F1 SINE Alu 13 117 0 8 878 26 0 0 0 chr5 38474570 38474596 -114062663 + AT_rich Low_complexity Low_complexity 1 26 0 8 878 21 0 0 0 chr5 38475219 38475240 -114062019 + AT_rich Low_complexity Low_complexity 1 21 0 8 878 180 0 0 0 chr5 38476661 38476681 -114060578 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 878 296 24 24 0 chr5 38477730 38477771 -114059488 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 878 220 235 19 31 chr5 38478413 38478482 -114058777 + MIRb SINE MIR 30 108 -160 8 878 435 218 19 19 chr5 38479010 38479113 -114058146 + MER57-int LTR ERV1 7155 7257 -280 8 878 332 260 0 0 chr5 38479358 38479435 -114057824 - BC1_Mm scRNA scRNA -65 87 11 8 878 214 174 0 0 chr5 38482535 38482581 -114054678 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 8 878 325 262 48 10 chr5 38482616 38482720 -114054539 + B1_Mur3 SINE Alu 6 113 -36 8 878 1553 211 118 0 chr5 38483937 38484311 -114052948 - MTD LTR MaLR 0 419 2 8 878 868 135 0 38 chr5 38484514 38484699 -114052560 + CT-rich Low_complexity Low_complexity 3 180 0 8 878 292 160 371 0 chr5 38485281 38485386 -114051873 - B2_Mm2 SINE B2 -3 192 49 8 878 1016 100 38 0 chr5 38485420 38485580 -114051679 - B2_Mm1t SINE B2 -14 179 14 8 878 303 333 76 8 chr5 38485692 38485810 -114051449 + MER20 DNA MER1_type 43 168 -51 8 878 297 312 135 13 chr5 38486414 38486570 -114050689 - MER58C DNA MER1_type -40 175 1 8 878 279 271 240 25 chr5 38486780 38486984 -114050275 - L1M5 LINE L1 -339 5825 5578 8 878 308 256 158 14 chr5 38487050 38487189 -114050070 - L1M5 LINE L1 -583 5581 5423 8 878 204 191 21 0 chr5 38488246 38488293 -114048966 - L2c LINE L2 -248 3139 3092 8 878 546 238 266 3 chr5 38489107 38489393 -114047866 + MTE2b LTR MaLR 19 379 0 8 878 353 302 36 0 chr5 38489814 38489953 -114047306 + MER58B DNA MER1_type 25 168 -173 8 878 233 283 104 77 chr5 38490199 38490421 -114046838 - LTR79 LTR ERVL -287 240 13 8 878 355 323 108 10 chr5 38491572 38491775 -114045484 - L2 LINE L2 -747 2672 2450 8 878 295 209 76 11 chr5 38492229 38492321 -114044938 - PB1D10 SINE Alu -18 99 2 8 878 259 186 26 103 chr5 38492401 38492479 -114044780 + ID4 SINE ID 1 72 -11 8 878 510 262 7 34 chr5 38492902 38493048 -114044211 + ID_B1 SINE B4 83 224 0 8 878 584 197 30 0 chr5 38493081 38493213 -114044046 + MIR SINE MIR 29 164 -98 8 878 212 0 36 0 chr5 38495766 38495794 -114041465 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 878 191 235 165 63 chr5 38495940 38496067 -114041192 + L2b LINE L2 3029 3168 -207 8 878 359 282 109 0 chr5 38496667 38496823 -114040436 + MIR SINE MIR 64 236 -26 8 878 237 65 0 0 chr5 38498021 38498052 -114039207 + (T)n Simple_repeat Simple_repeat 1 31 0 8 878 257 265 26 97 chr5 38498445 38498558 -114038701 - PB1D10 SINE Alu -12 105 1 8 878 258 280 84 0 chr5 38499068 38499175 -114038084 - PB1D10 SINE Alu -1 116 1 8 878 483 18 0 0 chr5 38499533 38499589 -114037670 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 878 354 336 196 9 chr5 38501727 38501946 -114035313 - Charlie10 DNA MER1_type -2561 261 2 1 878 531 334 21 56 chr5 38502942 38503299 -114033960 + L1MC4 LINE L1 6648 6994 -1048 2 878 213 322 87 10 chr5 38503526 38503657 -114033602 - MIRb SINE MIR -47 221 67 3 878 214 262 66 0 chr5 38503917 38503978 -114033281 - ID4 SINE ID -3 80 16 4 878 408 305 112 25 chr5 38504051 38504673 -114032586 - L1ME2z LINE L1 -611 5833 5147 5 878 310 315 8 51 chr5 38505112 38505229 -114032030 - PB1D10 SINE Alu -5 112 1 6 878 577 220 98 0 chr5 38505381 38505513 -114031746 + B1_Mur1 SINE Alu 4 148 -1 7 878 439 244 31 39 chr5 38505913 38506041 -114031218 + B4A SINE B4 1 127 -165 8 878 370 280 16 25 chr5 38506085 38506206 -114031053 + PB1D9 SINE Alu 1 120 0 9 878 238 386 86 11 chr5 38506206 38506270 -114030989 + B4A SINE B4 86 284 -8 1 878 209 270 53 13 chr5 38508389 38508464 -114028795 - MIRm SINE MIR -128 148 71 1 878 238 262 250 20 chr5 38509119 38509267 -114027992 + L1M4 LINE L1 5172 5353 -793 1 878 325 241 69 0 chr5 38509267 38509383 -114027876 - Lx7 LINE L1 -1 7695 7572 1 878 252 0 0 0 chr5 38509383 38509411 -114027848 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 878 215 361 57 16 chr5 38515967 38516091 -114021168 - MIR SINE MIR -82 180 52 1 878 854 34 246 0 chr5 38516175 38516293 -114020966 + B1_Mm SINE Alu 1 147 0 1 878 351 154 31 0 chr5 38516438 38516503 -114020756 + URR1B DNA MER1_type 73 139 -86 1 878 1377 79 17 0 chr5 38519979 38520156 -114017103 - B2_Mm2 SINE B2 -14 181 2 1 878 232 357 32 20 chr5 38520687 38520844 -114016415 - MIR3 SINE MIR -99 169 7 1 878 1106 62 14 0 chr5 38520991 38521135 -114016124 - L1_Mus1 LINE L1 0 6567 6422 2 878 2929 40 43 0 chr5 38521582 38521934 -114015325 - IAPLTR1_Mm LTR ERVK 0 367 1 2 878 9037 29 2 5 chr5 38521934 38523019 -114014240 - IAPEz-int LTR ERVK 0 6481 5400 2 878 20259 37 47 14 chr5 38522997 38525574 -114011685 - IAPEz-int LTR ERVK -3811 2670 8 2 878 2929 40 43 0 chr5 38525574 38525926 -114011333 - IAPLTR1_Mm LTR ERVK 0 367 1 2 878 538 312 31 25 chr5 38527014 38527175 -114010084 + RSINE1 SINE B4 1 162 -3 2 878 852 69 2 4 chr5 38527187 38527315 -114009944 + B1_Mus1 SINE Alu 24 149 0 2 878 240 111 0 0 chr5 38527315 38527351 -114009908 + (A)n Simple_repeat Simple_repeat 1 36 0 2 878 222 37 0 0 chr5 38529168 38529195 -114008064 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 2 878 387 286 33 0 chr5 38530416 38530507 -114006752 + RSINE1 SINE B4 9 102 -63 2 878 207 320 88 25 chr5 38532874 38532954 -114004305 + MIRc SINE MIR 114 198 -70 2 879 536 250 102 0 chr5 38536389 38536517 -114000742 + ID_B1 SINE B4 84 224 0 2 879 360 211 110 11 chr5 38536533 38536624 -114000635 + RSINE1 SINE B4 5 104 -61 2 879 360 0 0 0 chr5 38536640 38536680 -114000579 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 879 336 64 0 0 chr5 38536680 38536726 -114000533 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 879 458 258 89 118 chr5 38536807 38537111 -114000148 + MLT1B LTR MaLR 80 374 -16 3 879 231 244 0 0 chr5 38538518 38538563 -113998696 + B1F2 SINE Alu 16 60 -89 3 879 658 219 79 6 chr5 38538523 38538688 -113998571 + B4 SINE B4 106 282 -10 3 879 2006 63 11 25 chr5 38538719 38538996 -113998263 + L1_Mus2 LINE L1 6294 6566 0 3 879 275 259 26 61 chr5 38539070 38539185 -113998074 + MLT1D LTR MaLR 110 220 -285 3 879 35 0 0 0 chr5 38539354 38539389 -113997870 + AT_rich Low_complexity Low_complexity 1 35 0 3 879 212 156 0 62 chr5 38539601 38539649 -113997610 - PB1 SINE Alu -2 125 81 3 879 1202 284 149 17 chr5 38540285 38540973 -113996286 + L1MB5 LINE L1 5395 6172 -2 3 879 341 309 49 67 chr5 38548206 38548431 -113988828 + MIR SINE MIR 19 239 -23 4 879 411 280 173 20 chr5 38552382 38552579 -113984680 - MLT1D LTR MaLR -12 493 267 4 879 313 269 25 25 chr5 38552711 38552791 -113984468 - MLT1D LTR MaLR -425 80 1 4 879 554 248 16 0 chr5 38553327 38553448 -113983811 + MTE2b LTR MaLR 6 128 -251 4 879 647 245 91 18 chr5 38553468 38553688 -113983571 - MTEa LTR MaLR -35 344 109 4 879 297 282 91 17 chr5 38553722 38553871 -113983388 + MIR SINE MIR 46 207 -1 4 879 249 200 94 0 chr5 38554559 38554644 -113982615 - MTEa LTR MaLR -232 127 33 4 879 181 242 130 43 chr5 38555210 38555279 -113981980 + MIR3 SINE MIR 109 183 -25 4 879 1406 135 9 35 chr5 38556266 38556497 -113980762 + URR1B DNA MER1_type 1 225 0 4 879 1081 254 41 10 chr5 38556855 38557163 -113980096 + MTE2b LTR MaLR 1 311 -68 4 879 213 266 61 37 chr5 38557435 38557517 -113979742 + MIR3 SINE MIR 110 193 -15 4 879 405 0 0 0 chr5 38558489 38558534 -113978725 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 879 663 237 0 0 chr5 38559079 38559210 -113978049 - RSINE1 SINE B4 -33 132 2 5 879 394 302 50 0 chr5 38561106 38561225 -113976034 + RSINE1 SINE B4 37 161 -4 5 879 249 33 0 0 chr5 38561226 38561256 -113976003 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 879 279 0 0 0 chr5 38561256 38561286 -113975973 + (TC)n Simple_repeat Simple_repeat 1 31 0 5 879 225 0 0 0 chr5 38561286 38561310 -113975949 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 879 255 261 15 0 chr5 38561536 38561601 -113975658 + MLT1J LTR MaLR 442 507 -5 5 879 252 292 52 10 chr5 38561837 38561934 -113975325 - MLT1D LTR MaLR -335 170 70 5 879 4649 109 42 8 chr5 38562300 38563013 -113974246 + RMER19A LTR ERVK 1 737 0 5 879 207 0 0 0 chr5 38563600 38563623 -113973636 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5 879 408 20 0 0 chr5 38563697 38563746 -113973513 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 879 479 254 104 28 chr5 38563797 38563979 -113973280 + B3A SINE B2 3 198 0 6 879 336 253 57 63 chr5 38563985 38564112 -113973147 + B3 SINE B2 1 195 -21 6 879 231 304 0 18 chr5 38564342 38564399 -113972860 + RSINE1 SINE B4 108 163 -2 6 879 360 0 0 0 chr5 38564792 38564832 -113972427 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 879 276 254 31 0 chr5 38565287 38565368 -113971891 - MIRc SINE MIR -96 172 86 6 879 987 179 18 55 chr5 38566248 38566467 -113970792 + B3 SINE B2 1 211 -5 6 879 1216 205 141 0 chr5 38567206 38567489 -113969770 - MTEa LTR MaLR -56 323 1 6 879 290 315 89 0 chr5 38568418 38568564 -113968695 + L1MB3 LINE L1 5726 5884 -299 6 879 528 283 78 105 chr5 38568872 38569132 -113968127 + B4A SINE B4 5 270 -22 6 879 288 0 0 0 chr5 38569132 38569164 -113968095 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 879 528 283 78 105 chr5 38569164 38569199 -113968060 + B4A SINE B4 271 292 0 6 879 2671 35 32 0 chr5 38569460 38569806 -113967453 + IAPEY2_LTR LTR ERVK 1 357 0 7 879 357 24 0 0 chr5 38570702 38570744 -113966515 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 879 695 242 169 16 chr5 38570753 38570772 -113966487 - B4 SINE B4 -4 288 270 7 879 261 0 0 0 chr5 38570772 38570801 -113966458 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 879 695 242 169 16 chr5 38570801 38571029 -113966230 - B4 SINE B4 -23 269 4 7 879 504 0 0 0 chr5 38571044 38571100 -113966159 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 879 494 252 0 9 chr5 38571101 38571209 -113966050 - RSINE1 SINE B4 -51 114 8 7 879 231 329 0 0 chr5 38571373 38571452 -113965807 + MLT1C LTR MaLR 357 435 -32 7 879 230 333 59 39 chr5 38571852 38572005 -113965254 - L2c LINE L2 -236 3151 2996 7 879 267 277 24 12 chr5 38572094 38572178 -113965081 - MER21B LTR ERV1 -364 499 415 7 879 285 265 86 29 chr5 38572464 38572569 -113964690 + MLT1A1 LTR MaLR 291 401 -7 7 879 655 355 124 77 chr5 38572576 38573636 -113963623 + MTE-int LTR MaLR 1 1109 -471 8 879 4847 191 41 43 chr5 38573851 38574620 -113962639 - Lx9 LINE L1 -2 7642 6880 8 879 1066 44 15 0 chr5 38574620 38574756 -113962503 + B1_Mm SINE Alu 2 139 -8 8 879 212 0 0 35 chr5 38574757 38574786 -113962473 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 879 4847 191 41 43 chr5 38574786 38575096 -113962163 - Lx9 LINE L1 -765 6879 6564 8 879 237 33 0 0 chr5 38575168 38575198 -113962061 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 8 879 717 168 23 8 chr5 38575220 38575352 -113961907 - B1_Mur4 SINE Alu -9 141 8 8 879 230 237 51 26 chr5 38575390 38575468 -113961791 + (CATG)n Simple_repeat Simple_repeat 3 82 0 8 879 270 252 0 0 chr5 38575468 38575567 -113961692 + (TG)n Simple_repeat Simple_repeat 2 100 0 8 879 511 308 126 25 chr5 38575927 38576253 -113961006 - L1ME4a LINE L1 -201 5923 5565 8 879 352 230 90 23 chr5 38576278 38576389 -113960870 - PB1D10 SINE Alu 0 127 10 8 879 555 296 42 0 chr5 38576431 38576620 -113960639 + B3A SINE B2 2 198 0 9 879 225 0 0 0 chr5 38576670 38576695 -113960564 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 9 879 648 283 111 24 chr5 38576731 38576984 -113960275 - B4 SINE B4 -16 276 2 9 879 276 274 176 46 chr5 38577325 38577478 -113959781 + MLT1C LTR MaLR 268 440 -27 9 879 264 266 75 38 chr5 38577565 38577698 -113959561 + MIR SINE MIR 36 173 -89 9 879 1071 225 80 63 chr5 38577732 38578102 -113959157 - MTE2a LTR MaLR 0 419 35 9 879 482 329 74 28 chr5 38579227 38579443 -113957816 + B4A SINE B4 2 227 -65 9 879 2156 124 46 3 chr5 38579449 38579796 -113957463 - ORR1B1 LTR MaLR 0 394 33 9 879 329 132 24 0 chr5 38580372 38580455 -113956804 + (CAGAGA)n Simple_repeat Simple_repeat 2 86 0 9 879 263 222 0 226 chr5 38580485 38580578 -113956681 + B4 SINE B4 9 80 -212 9 879 1121 118 0 6 chr5 38580579 38580758 -113956501 + (GGA)n Simple_repeat Simple_repeat 3 180 0 1 879 204 188 0 0 chr5 38580758 38580790 -113956469 + polypurine Low_complexity Low_complexity 3 34 0 1 879 257 286 99 63 chr5 38580799 38580822 -113956437 + B1F2 SINE Alu 1 135 -14 1 879 787 231 11 37 chr5 38580822 38580924 -113956335 + B4 SINE B4 109 212 -80 9 879 1888 150 81 0 chr5 38580924 38581270 -113955989 - ORR1D1 LTR MaLR 0 374 1 1 879 257 286 99 63 chr5 38581270 38581286 -113955973 + B1F2 SINE Alu 136 147 -2 1 879 787 231 11 37 chr5 38581286 38581356 -113955903 + B4 SINE B4 213 292 0 9 879 210 300 0 0 chr5 38581369 38581419 -113955840 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 879 225 94 0 0 chr5 38581792 38581824 -113955435 + (TGG)n Simple_repeat Simple_repeat 1 32 0 1 879 200 295 0 32 chr5 38582266 38582329 -113954930 + L4 LINE RTE 1765 1825 -204 1 879 720 275 38 17 chr5 38582365 38582589 -113954670 - MLT1C LTR MaLR 0 505 269 1 879 962 271 42 0 chr5 38582729 38582991 -113954268 + B4A SINE B4 1 273 -19 1 879 402 39 0 0 chr5 38583007 38583059 -113954200 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 879 917 296 96 6 chr5 38583715 38584048 -113953211 + MLT1B LTR MaLR 3 365 -25 1 879 222 265 0 0 chr5 38584756 38584805 -113952454 + C-rich Low_complexity Low_complexity 4 52 0 1 879 230 139 70 0 chr5 38584805 38584848 -113952411 - B1F SINE Alu -2 147 102 1 879 1864 167 57 22 chr5 38584858 38584878 -113952381 + MTD LTR MaLR 1 17 -402 1 879 207 0 0 0 chr5 38584878 38584901 -113952358 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 879 1864 167 57 22 chr5 38584901 38585285 -113951974 + MTD LTR MaLR 18 419 0 1 879 1242 256 69 20 chr5 38586149 38586496 -113950763 - MTEa LTR MaLR -15 364 1 1 879 776 229 105 41 chr5 38587108 38587462 -113949797 - MLT1C LTR MaLR -3 387 30 1 879 225 0 0 0 chr5 38587469 38587494 -113949765 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 879 559 279 23 64 chr5 38588145 38588363 -113948896 - L1MB5 LINE L1 -103 6071 5863 1 879 467 244 34 0 chr5 38589407 38589526 -113947733 - B3A SINE B2 -24 174 52 1 879 244 308 95 29 chr5 38589606 38589743 -113947516 - L2 LINE L2 -1135 2284 2139 1 879 824 174 28 0 chr5 38591305 38591449 -113945810 + B1_Mur1 SINE Alu 1 148 -1 1 879 21 0 0 0 chr5 38591549 38591570 -113945689 + AT_rich Low_complexity Low_complexity 1 21 0 1 879 338 304 0 0 chr5 38592823 38592915 -113944344 + ORR1E LTR MaLR 53 144 -215 1 879 2565 96 28 5 chr5 38593978 38594376 -113942883 + MTB_Mm LTR MaLR 1 407 0 1 879 541 216 81 7 chr5 38595332 38595481 -113941778 - RSINE1 SINE B4 -1 164 5 1 879 270 0 0 0 chr5 38598825 38598855 -113938404 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 1 879 187 316 40 0 chr5 38599252 38599328 -113937931 - MIRm SINE MIR -81 195 117 1 879 772 184 7 39 chr5 38599366 38599519 -113937740 - B1_Mur2 SINE Alu -1 148 1 1 879 353 284 150 0 chr5 38599676 38599803 -113937456 + RSINE1 SINE B4 18 163 -2 1 879 522 134 21 0 chr5 38602020 38602117 -113935142 - PB1D7 SINE Alu -20 100 2 1 879 313 278 65 0 chr5 38602931 38603039 -113934220 - Charlie1 DNA MER1_type -27 2754 2640 1 879 232 311 67 0 chr5 38603042 38603132 -113934127 - Charlie1 DNA MER1_type -2571 210 115 1 879 712 157 41 8 chr5 38603687 38603809 -113933450 - B1_Mur2 SINE Alu -9 140 15 1 879 367 267 7 123 chr5 38603717 38603871 -113933388 - MT2B LTR ERVL -343 258 123 1 879 182 156 0 22 chr5 38605803 38605849 -113931410 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 879 723 317 14 5 chr5 38605851 38606060 -113931199 - B4 SINE B4 0 292 82 1 879 485 234 9 6 chr5 38606345 38606481 -113930778 - B1_Mur1 SINE Alu 0 149 17 1 879 220 348 71 36 chr5 38606361 38606501 -113930758 - ID_B1 SINE B4 0 224 80 1 879 279 265 45 0 chr5 38607291 38607381 -113929878 - B1_Mm SINE Alu -52 96 2 1 879 1143 251 104 9 chr5 38608202 38608548 -113928711 + MTEb LTR MaLR 1 379 0 1 879 696 297 44 60 chr5 38609171 38609486 -113927773 + RLTR18B LTR ERVK 1 310 -306 1 879 796 325 22 56 chr5 38609456 38609870 -113927389 + RLTR18B LTR ERVK 135 512 0 1 879 186 378 33 11 chr5 38610071 38610162 -113927097 + L2a LINE L2 3320 3412 -14 1 879 669 223 150 28 chr5 38610577 38610757 -113926502 - B4 SINE B4 -9 283 82 1 879 577 330 103 32 chr5 38610774 38611084 -113926175 + MLT1B LTR MaLR 52 383 -7 1 879 229 263 62 10 chr5 38612195 38612291 -113924968 + MIR SINE MIR 96 196 -66 1 879 458 240 0 10 chr5 38612829 38612930 -113924329 + B4A SINE B4 12 111 -181 1 879 324 0 0 0 chr5 38612965 38613001 -113924258 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 879 500 163 21 12 chr5 38613009 38613100 -113924159 + B3A SINE B2 1 105 -90 1 879 4004 90 59 12 chr5 38613100 38613674 -113923585 - MT2B LTR ERVL 0 601 1 1 879 484 202 136 79 chr5 38613674 38613759 -113923500 + B2_Mm2 SINE B2 106 187 -8 1 879 265 164 162 15 chr5 38613776 38613844 -113923415 + MTD LTR MaLR 342 419 0 1 879 1135 84 0 0 chr5 38616153 38616296 -113920963 + B1_Mus1 SINE Alu 1 143 -5 1 879 180 0 0 0 chr5 38616299 38616319 -113920940 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 879 355 253 42 48 chr5 38616323 38616489 -113920770 - RLTR15 LTR ERVK -18 341 177 1 879 502 247 52 26 chr5 38616605 38616759 -113920500 + RSINE1 SINE B4 3 160 -5 1 879 377 253 13 0 chr5 38616780 38616855 -113920404 + ID2 SINE ID 7 82 -1 1 879 1217 62 0 0 chr5 38617990 38618135 -113919124 - B1_Mus2 SINE Alu -2 145 1 1 879 856 281 153 27 chr5 38618138 38618960 -113918299 - L1M4 LINE L1 -1107 5039 4099 1 879 235 318 59 0 chr5 38619635 38619720 -113917539 + MIRm SINE MIR 67 156 -120 1 879 766 246 154 21 chr5 38620084 38620317 -113916942 + B4A SINE B4 29 292 0 1 879 35 41 0 0 chr5 38620457 38620506 -113916753 + AT_rich Low_complexity Low_complexity 1 49 0 1 879 234 294 65 32 chr5 38621211 38621334 -113915925 + ORR1B1 LTR MaLR 23 149 -245 1 879 241 217 0 32 chr5 38621913 38621975 -113915284 + GA-rich Low_complexity Low_complexity 3 62 0 1 879 242 225 83 8 chr5 38623512 38623633 -113913626 + ORR1B1-int LTR MaLR 625 754 -755 1 879 686 173 41 41 chr5 38623526 38623541 -113913718 + ID_B1 SINE B4 78 222 -2 1 879 1023 15 62 0 chr5 38623541 38623671 -113913588 + B1_Mus1 SINE Alu 10 147 -1 1 879 349 188 0 96 chr5 38623686 38623780 -113913479 - L1MD LINE L1 -796 5350 5266 1 879 735 174 50 21 chr5 38623809 38623950 -113913309 - B1_Mus2 SINE Alu -1 146 2 1 879 287 302 58 41 chr5 38624054 38624175 -113913084 - PB1 SINE Alu -4 123 1 1 879 533 255 57 25 chr5 38624878 38625035 -113912224 - RSINE1 SINE B4 -1 164 3 1 879 597 308 94 6 chr5 38627008 38627178 -113910081 - B3 SINE B2 0 216 32 1 879 681 149 16 40 chr5 38627200 38627326 -113909933 - B1_Mus1 SINE Alu 0 148 26 1 879 552 209 208 34 chr5 38627780 38627958 -113909301 - B3 SINE B2 -4 212 4 1 879 1243 137 28 47 chr5 38627985 38628200 -113909059 - B3 SINE B2 -5 211 1 1 879 288 77 0 0 chr5 38628214 38628253 -113909006 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 879 666 261 21 11 chr5 38628255 38628441 -113908818 - B3A SINE B2 -9 189 2 1 879 272 263 40 0 chr5 38629342 38629418 -113907841 - ID4 SINE ID -1 82 4 1 879 2312 150 62 15 chr5 38629449 38629849 -113907410 - MTC LTR MaLR -2 419 1 1 879 418 242 335 14 chr5 38630121 38630328 -113906931 + B4 SINE B4 2 273 -19 1 879 285 29 0 0 chr5 38630342 38630376 -113906883 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 879 567 0 0 0 chr5 38630376 38630438 -113906821 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 879 306 50 0 0 chr5 38631172 38631212 -113906047 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 879 402 228 247 71 chr5 38631462 38631632 -113905627 + B4 SINE B4 33 232 -60 1 879 1022 143 0 9 chr5 38631633 38631852 -113905407 + GA-rich Low_complexity Low_complexity 1 217 0 1 879 342 0 0 0 chr5 38632664 38632702 -113904557 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 879 225 108 0 0 chr5 38632743 38632780 -113904479 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 879 815 278 63 45 chr5 38632814 38633100 -113904159 - B4 SINE B4 0 292 2 1 879 1253 34 7 0 chr5 38633135 38633282 -113903977 - B1_Mus1 SINE Alu 0 148 1 1 879 1432 246 46 32 chr5 38633310 38633655 -113903604 + ORR1D2 LTR MaLR 1 350 -20 1 879 836 142 13 66 chr5 38633669 38633820 -113903439 + B1_Mm SINE Alu 5 147 0 1 879 666 0 0 0 chr5 38633826 38633900 -113903359 + (GAAA)n Simple_repeat Simple_repeat 4 77 0 1 879 1058 55 49 0 chr5 38633900 38634062 -113903197 + (GGGA)n Simple_repeat Simple_repeat 2 172 0 1 879 335 198 89 57 chr5 38634113 38634236 -113903023 - ORR1D1 LTR MaLR -1 373 247 1 879 1241 77 59 0 chr5 38634793 38634962 -113902297 + B2_Mm1t SINE B2 1 179 -14 1 879 379 123 308 34 chr5 38634994 38635111 -113902148 + B2_Mm2 SINE B2 47 195 0 1 879 254 272 66 28 chr5 38635207 38635313 -113901946 + MER2 DNA MER2_type 98 207 -138 1 879 455 308 6 48 chr5 38635315 38635482 -113901777 + RSINE1 SINE B4 3 162 -3 1 879 284 313 70 85 chr5 38635482 38635514 -113901745 + B3A SINE B2 2 197 -1 1 879 268 345 32 48 chr5 38635527 38635652 -113901607 + MER2 DNA MER2_type 208 330 -15 1 879 721 153 16 31 chr5 38635606 38635734 -113901525 - B1_Mus2 SINE Alu -17 130 5 1 879 340 210 87 138 chr5 38635632 38635770 -113901489 - MT2B LTR ERVL -344 257 127 1 879 187 370 0 0 chr5 38636146 38636219 -113901040 + MIR SINE MIR 113 185 -77 1 879 185 304 121 31 chr5 38636427 38636604 -113900655 - MIRc SINE MIR -56 212 20 1 879 898 113 111 67 chr5 38636657 38636837 -113900422 + Lx LINE L1 6452 6639 -15 2 879 252 0 0 0 chr5 38636895 38636923 -113900336 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 879 797 182 0 22 chr5 38636923 38637058 -113900201 - B1_Mur1 SINE Alu -13 136 5 2 879 574 242 51 87 chr5 38637466 38637698 -113899561 - B4 SINE B4 -44 248 2 2 879 3461 25 5 2 chr5 38637933 38638328 -113898931 + MTA_Mm LTR MaLR 1 396 0 2 879 333 0 0 0 chr5 38638489 38638526 -113898733 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 879 263 237 0 0 chr5 38639164 38639223 -113898036 - MER44B DNA MER2_type -137 413 355 2 879 452 290 146 18 chr5 38639302 38639467 -113897792 - MER44B DNA MER2_type -321 229 44 2 879 1035 98 7 0 chr5 38639579 38639717 -113897542 + B1_Mus1 SINE Alu 1 139 -9 2 879 257 0 30 0 chr5 38639717 38639750 -113897509 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 879 1409 49 11 11 chr5 38639876 38640060 -113897199 + B2_Mm1a SINE B2 2 185 -8 2 879 34482 75 35 10 chr5 38640071 38644329 -113892930 + L1_Mus1 LINE L1 217 4585 -1298 2 879 1537 63 16 0 chr5 38644329 38644519 -113892740 - B2_Mm2 SINE B2 -2 193 1 2 879 34482 78 1 6 chr5 38644519 38646517 -113890742 + L1_Mus1 LINE L1 4586 6566 -1 2 879 191 242 86 57 chr5 38646859 38646929 -113890330 - MIR SINE MIR -11 251 180 2 879 644 281 91 93 chr5 38647029 38647382 -113889877 - ORR1E LTR MaLR -2 357 6 2 879 1171 247 23 4 chr5 38647407 38647667 -113889592 + B4 SINE B4 7 271 -21 2 879 788 82 18 30 chr5 38647799 38647930 -113889329 - ORR1C2 LTR MaLR -270 114 1 2 879 644 265 84 24 chr5 38647982 38648188 -113889071 - B3A SINE B2 0 216 1 2 879 231 257 0 67 chr5 38648683 38648758 -113888501 + ID2 SINE ID 3 72 -11 2 879 345 47 0 0 chr5 38648769 38648812 -113888447 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 879 339 25 0 0 chr5 38648812 38648851 -113888408 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 879 207 0 0 0 chr5 38650612 38650635 -113886624 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 879 1248 41 0 0 chr5 38650911 38651056 -113886203 + B1_Mm SINE Alu 1 145 -2 2 879 243 0 0 0 chr5 38651056 38651083 -113886176 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 879 393 190 76 0 chr5 38652694 38652773 -113884486 - B4A SINE B4 -198 94 10 2 879 267 333 28 0 chr5 38653010 38653082 -113884177 - tRNA-Ala-GCY_ tRNA tRNA 0 75 2 2 879 458 187 184 16 chr5 38653396 38653521 -113883738 + B1_Mur2 SINE Alu 3 148 -1 2 879 206 53 0 73 chr5 38653525 38653566 -113883693 + (A)n Simple_repeat Simple_repeat 1 38 0 2 879 895 265 24 118 chr5 38653633 38653920 -113883339 + B4A SINE B4 10 269 -23 2 879 324 94 0 0 chr5 38653920 38653973 -113883286 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 879 213 224 0 0 chr5 38654011 38654069 -113883190 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 2 879 245 295 56 28 chr5 38654274 38654417 -113882842 + L1MA9 LINE L1 6164 6310 -2 2 879 286 321 147 59 chr5 38654992 38655188 -113882071 + LTR79 LTR ERVL 122 340 -187 2 879 1075 22 78 35 chr5 38655188 38655329 -113881930 - B1_Mus1 SINE Alu 0 148 2 2 879 286 321 147 59 chr5 38655329 38655473 -113881786 + LTR79 LTR ERVL 341 492 -35 2 879 357 377 74 19 chr5 38656966 38657223 -113880036 + MER2 DNA MER2_type 75 345 0 2 879 860 102 17 0 chr5 38657547 38657665 -113879594 - PB1D9 SINE Alu 0 120 1 2 879 809 226 106 15 chr5 38658935 38659133 -113878126 + B3 SINE B2 1 216 0 2 879 1242 48 0 0 chr5 38659611 38659757 -113877502 + B1_Mus2 SINE Alu 2 147 0 2 879 261 0 0 0 chr5 38659757 38659786 -113877473 + (A)n Simple_repeat Simple_repeat 1 29 0 2 879 735 264 19 48 chr5 38660013 38660220 -113877039 - B3 SINE B2 -11 205 5 2 879 23 92 0 0 chr5 38660800 38660865 -113876394 + AT_rich Low_complexity Low_complexity 1 65 0 2 879 199 305 134 0 chr5 38661151 38661233 -113876026 + MIRb SINE MIR 145 237 -31 2 879 293 245 133 26 chr5 38661604 38661717 -113875542 + PB1 SINE Alu 1 125 -2 2 879 282 250 0 0 chr5 38661729 38661777 -113875482 + ID SINE ID 26 73 -151 2 879 487 248 9 0 chr5 38661951 38662056 -113875203 - B3A SINE B2 -92 106 1 2 879 591 292 102 33 chr5 38662567 38662811 -113874448 + B4A SINE B4 28 288 -4 2 879 554 192 0 71 chr5 38663001 38663113 -113874146 - B1_Mus1 SINE Alu -43 105 2 2 879 641 268 69 20 chr5 38663113 38663310 -113873949 + B3 SINE B2 10 216 0 2 879 202 143 0 39 chr5 38663375 38663426 -113873833 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 2 879 225 130 0 61 chr5 38663460 38663509 -113873750 + B3 SINE B2 167 212 -4 2 879 472 289 62 0 chr5 38663864 38663992 -113873267 - ID_B1 SINE B4 -8 216 81 2 879 439 252 9 37 chr5 38664219 38664326 -113872933 + PB1D10 SINE Alu 5 108 -9 2 879 270 227 240 91 chr5 38664326 38664337 -113872922 + ID_B1 SINE B4 86 221 -3 2 879 266 282 0 40 chr5 38664339 38664413 -113872846 + ID4 SINE ID 4 74 -9 2 879 791 233 100 25 chr5 38664738 38664997 -113872262 - MLT1G1 LTR MaLR 0 579 227 2 879 259 365 78 5 chr5 38665127 38665320 -113871939 + ERVL-E-int LTR ERVL 3035 3241 -2426 2 879 331 339 17 0 chr5 38665331 38665449 -113871810 + ERVL-E-int LTR ERVL 3453 3572 -2189 2 879 490 304 97 59 chr5 38665558 38665878 -113871381 + ERVL-E-int LTR ERVL 3554 3952 -1533 2 109 871 282 82 22 chr5 38666168 38666436 -113870823 + B4 SINE B4 1 284 -8 2 880 405 0 0 0 chr5 38666929 38666974 -113870285 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 880 511 291 8 0 chr5 38666987 38667114 -113870145 - RSINE1 SINE B4 -36 129 2 2 880 314 234 52 21 chr5 38667560 38667656 -113869603 - MER45A DNA Tip100 -19 159 61 2 880 382 38 12 71 chr5 38669993 38670078 -113867181 + (CAAAAA)n Simple_repeat Simple_repeat 2 81 0 2 880 428 349 6 17 chr5 38670265 38670443 -113866816 + CT-rich Low_complexity Low_complexity 1 176 0 2 880 185 322 95 40 chr5 38670497 38670623 -113866636 - L2 LINE L2 -896 2523 2391 2 880 491 0 0 17 chr5 38671612 38671672 -113865587 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 880 364 308 43 0 chr5 38672346 38672463 -113864796 + MIR SINE MIR 103 224 -38 2 880 305 309 16 24 chr5 38672765 38672891 -113864368 + C-rich Low_complexity Low_complexity 4 128 0 2 880 684 216 51 32 chr5 38672891 38673049 -113864210 - ID_B1 SINE B4 -1 223 63 2 880 213 311 77 42 chr5 38673281 38673449 -113863810 + L2c LINE L2 3137 3310 -77 2 880 288 77 0 0 chr5 38673562 38673601 -113863658 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 2 880 340 348 6 31 chr5 38673615 38673699 -113863560 + (TGGG)n Simple_repeat Simple_repeat 2 85 0 2 880 428 51 17 0 chr5 38673699 38673758 -113863501 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 880 340 348 6 31 chr5 38673758 38673809 -113863450 + (TGGG)n Simple_repeat Simple_repeat 2 49 0 2 880 2233 117 54 30 chr5 38673809 38674178 -113863081 - ORR1C1 LTR MaLR 0 378 1 2 880 340 348 6 31 chr5 38674178 38674201 -113863058 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 2 880 381 43 0 0 chr5 38674560 38674607 -113862652 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 880 380 365 14 62 chr5 38674607 38674753 -113862506 - RSINE1 SINE B4 -24 141 3 2 880 398 264 45 19 chr5 38674923 38675074 -113862185 - MIR SINE MIR -105 157 11 2 880 180 0 0 0 chr5 38675208 38675228 -113862031 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 880 695 162 0 207 chr5 38675305 38675484 -113861775 - B1_Mur2 SINE Alu -6 143 2 2 880 24 32 0 0 chr5 38675779 38675810 -113861449 + AT_rich Low_complexity Low_complexity 1 31 0 2 880 21 36 0 0 chr5 38675832 38675860 -113861399 + AT_rich Low_complexity Low_complexity 1 28 0 2 880 435 314 55 25 chr5 38676143 38676306 -113860953 + MER5A DNA MER1_type 21 188 -1 2 880 29 0 0 0 chr5 38676538 38676567 -113860692 + AT_rich Low_complexity Low_complexity 1 29 0 2 880 3489 59 2 7 chr5 38676567 38677008 -113860251 - Lx3_Mus LINE L1 0 7009 6571 2 880 761 258 62 62 chr5 38677564 38677853 -113859406 - B4 SINE B4 -2 290 2 2 880 628 216 122 77 chr5 38677885 38678041 -113859218 + B3 SINE B2 1 170 -46 2 880 588 107 0 0 chr5 38678041 38678144 -113859115 + (CA)n Simple_repeat Simple_repeat 1 103 0 2 880 424 216 122 77 chr5 38678144 38678168 -113859091 + B2_Mm2 SINE B2 162 188 -7 2 880 268 308 23 8 chr5 38678176 38678307 -113858952 - L1M4 LINE L1 -715 5465 5333 2 880 1966 144 31 145 chr5 38678373 38678787 -113858472 - ORR1B2 LTR MaLR 0 367 1 2 880 345 319 30 18 chr5 38678859 38679028 -113858231 - L1M4 LINE L1 -1056 5090 4920 2 880 640 286 53 49 chr5 38679811 38680119 -113857140 + ORR1E LTR MaLR 57 379 0 2 880 495 335 71 40 chr5 38680119 38680267 -113856992 + L1MA5 LINE L1 5745 5887 -413 2 880 630 267 121 16 chr5 38680267 38680457 -113856802 - ID_B1 SINE B4 -12 212 3 2 880 495 335 71 40 chr5 38680457 38680721 -113856538 + L1MA5 LINE L1 5888 6171 -129 2 880 300 356 6 18 chr5 38680721 38680884 -113856375 + RSINE1 SINE B4 3 163 -2 2 880 405 176 0 38 chr5 38680943 38681102 -113856157 + (CAGAGA)n Simple_repeat Simple_repeat 6 158 0 2 880 293 193 0 17 chr5 38681136 38681252 -113856007 + (CAGA)n Simple_repeat Simple_repeat 4 117 0 2 880 631 319 85 22 chr5 38681393 38681803 -113855456 - L1MA9 LINE L1 -46 6266 5831 2 880 306 312 10 0 chr5 38682927 38683023 -113854236 + MIR SINE MIR 83 179 -83 2 880 670 300 63 42 chr5 38683342 38683828 -113853431 - L1MB3 LINE L1 -3 6168 5688 2 880 603 254 0 0 chr5 38683828 38684066 -113853193 + (TG)n Simple_repeat Simple_repeat 1 238 0 2 880 652 203 161 21 chr5 38684098 38684284 -113852975 - MTD LTR MaLR 0 419 208 2 880 803 243 113 0 chr5 38684293 38684478 -113852781 - B3 SINE B2 -7 209 4 2 880 762 278 62 0 chr5 38684478 38684658 -113852601 - MTD LTR MaLR -209 210 18 2 880 247 224 224 0 chr5 38684770 38684837 -113852422 - B4 SINE B4 -202 90 9 2 880 519 310 22 55 chr5 38686712 38686893 -113850366 + ID_B1 SINE B4 20 194 -30 3 880 272 377 48 21 chr5 38688252 38688439 -113848820 - MLT1L LTR MaLR -104 506 315 3 880 291 28 0 0 chr5 38688962 38688998 -113848261 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 880 384 312 44 55 chr5 38689739 38689922 -113847337 + MIR3 SINE MIR 17 197 -11 3 880 231 308 69 101 chr5 38690034 38690222 -113847037 - MIR SINE MIR 0 262 81 3 880 549 110 0 0 chr5 38690336 38690418 -113846841 + (CACG)n Simple_repeat Simple_repeat 1 82 0 3 880 427 76 0 48 chr5 38691797 38691880 -113845379 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 3 880 755 273 36 31 chr5 38691885 38692108 -113845151 - B4A SINE B4 0 292 69 3 880 344 259 148 53 chr5 38692761 38693016 -113844243 - MLT1E1A LTR MaLR 0 680 247 3 880 666 274 96 48 chr5 38695249 38695437 -113841822 + B3A SINE B2 1 197 -1 3 880 274 232 28 28 chr5 38695470 38695541 -113841718 + MER2 DNA MER2_type 114 184 -161 3 880 198 0 0 0 chr5 38695541 38695563 -113841696 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 880 700 281 0 18 chr5 38695583 38695753 -113841506 - ID_B1 SINE B4 -8 216 50 3 880 630 319 16 5 chr5 38695758 38695947 -113841312 + MER2B DNA MER2_type 139 329 -7 3 880 532 301 85 15 chr5 38696262 38696461 -113840798 + MER20 DNA MER1_type 1 213 -6 3 880 414 0 0 0 chr5 38696516 38696562 -113840697 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 880 258 279 97 171 chr5 38697535 38697885 -113839374 - MLT1A0 LTR MaLR -22 343 20 3 880 261 0 0 0 chr5 38698812 38698841 -113838418 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 3 880 385 271 85 24 chr5 38701871 38702083 -113835176 - L1M3 LINE L1 -1187 4953 4729 3 880 269 338 25 0 chr5 38702094 38702106 -113835153 - ID2 SINE ID -1 82 37 3 880 284 262 16 0 chr5 38702106 38702167 -113835092 - tRNA-Ala-GCY_ tRNA tRNA -11 64 3 3 880 1512 189 77 53 chr5 38702298 38702673 -113834586 + ORR1C2 LTR MaLR 1 384 0 3 880 484 295 20 15 chr5 38702709 38702905 -113834354 - L1M3 LINE L1 -1427 4713 4517 3 880 597 262 126 26 chr5 38702933 38703302 -113833957 - MTE2a LTR MaLR 0 379 1 3 880 231 284 165 22 chr5 38703303 38703533 -113833726 - L1M3 LINE L1 -1649 4494 4232 3 880 475 258 25 103 chr5 38703586 38703828 -113833431 - L1M3 LINE L1 -1887 4253 4031 3 880 3226 87 11 16 chr5 38704442 38704877 -113832382 - RLTR10C LTR ERVK -3 433 1 3 880 272 282 90 60 chr5 38705217 38705383 -113831876 - MIRc SINE MIR -97 171 1 3 880 210 37 0 0 chr5 38705470 38705497 -113831762 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 3 880 250 284 14 0 chr5 38706228 38706302 -113830957 - ID_B1 SINE B4 -8 216 142 3 880 1084 267 93 19 chr5 38706299 38706623 -113830636 - ORR1D2 LTR MaLR -22 348 1 3 880 599 273 28 0 chr5 38706623 38706765 -113830494 - ID_B1 SINE B4 -76 148 3 3 880 261 230 44 44 chr5 38707130 38707221 -113830038 - MLT1G3 LTR MaLR -16 579 489 3 880 244 289 18 44 chr5 38707201 38707429 -113829830 + RMER17D LTR ERVK 243 464 -425 3 880 298 310 251 58 chr5 38707740 38708030 -113829229 - MLT1G3 LTR MaLR -174 421 76 3 880 187 255 112 54 chr5 38708298 38708402 -113828857 + L2a LINE L2 2982 3089 -337 3 880 261 243 95 0 chr5 38708563 38708637 -113828622 - ID4_ SINE ID -1 82 2 3 880 207 114 0 0 chr5 38712157 38712192 -113825067 + (GGA)n Simple_repeat Simple_repeat 1 35 0 3 880 219 268 144 44 chr5 38713675 38713765 -113823494 + L2c LINE L2 3285 3383 -4 3 880 234 336 0 55 chr5 38714661 38714771 -113822488 - L2a LINE L2 -341 3085 2982 3 880 302 336 49 32 chr5 38714864 38714987 -113822272 - MIR SINE MIR -100 162 38 3 880 437 76 15 0 chr5 38715004 38715070 -113822189 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 880 477 274 208 29 chr5 38715079 38715320 -113821939 - B4A SINE B4 -8 284 1 3 880 251 325 70 39 chr5 38715644 38715772 -113821487 + MER117 DNA MER1_type 60 191 -6 3 880 830 244 131 13 chr5 38716106 38716343 -113820916 + B4A SINE B4 2 266 -26 3 880 441 0 0 0 chr5 38716348 38716397 -113820862 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 880 403 319 141 20 chr5 38716761 38717027 -113820232 + ORR1E LTR MaLR 19 298 -76 3 880 219 69 0 0 chr5 38717072 38717101 -113820158 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 880 1213 242 60 0 chr5 38717111 38717363 -113819896 - B4 SINE B4 -24 268 2 3 880 220 216 0 0 chr5 38717913 38717964 -113819295 + A-rich Low_complexity Low_complexity 2 52 0 3 880 1300 85 11 6 chr5 38718327 38718505 -113818754 + B2_Mm1t SINE B2 2 180 -13 3 880 272 120 0 9 chr5 38718544 38718592 -113818667 + B2_Mm2 SINE B2 64 109 -107 3 880 189 0 0 0 chr5 38718606 38718627 -113818632 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 3 880 3062 17 3 11 chr5 38718713 38719062 -113818197 + ORR1A0 LTR MaLR 1 346 0 3 880 286 232 110 77 chr5 38719534 38719716 -113817543 - RMER17D LTR ERVK -485 404 217 3 880 1538 161 83 4 chr5 38719836 38720162 -113817097 + ORR1D1-int LTR MaLR 1000 1528 -52 3 880 1157 182 52 188 chr5 38720162 38720588 -113816671 + ORR1D1 LTR MaLR 5 372 -2 3 880 269 207 19 0 chr5 38721953 38722013 -113815246 - B1_Mur2 SINE Alu -2 147 58 3 880 266 278 0 0 chr5 38722992 38723046 -113814213 - ID_B1 SINE B4 -20 204 151 3 880 2140 201 41 3 chr5 38723056 38723446 -113813813 - MTD LTR MaLR -14 405 1 3 880 3745 228 115 52 chr5 38723446 38724536 -113812723 - MTD-int LTR MaLR 0 1258 101 3 880 1380 144 32 14 chr5 38724568 38724786 -113812473 - URR1A DNA MER1_type -4 222 1 3 880 663 221 167 11 chr5 38724819 38724993 -113812266 + B3 SINE B2 10 210 -6 3 880 461 296 37 79 chr5 38725739 38725955 -113811304 - MLT1A1 LTR MaLR -3 405 199 3 880 371 274 72 94 chr5 38726105 38726378 -113810881 + ORR1E LTR MaLR 98 378 -1 3 880 319 281 18 88 chr5 38726380 38726493 -113810766 - MLT1A1 LTR MaLR -230 135 31 3 880 407 35 18 0 chr5 38726521 38726578 -113810681 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 880 737 192 0 0 chr5 38726583 38726708 -113810551 - RSINE1 SINE B4 -38 127 3 3 880 387 369 117 20 chr5 38726870 38727213 -113810046 + MLT1J-int LTR MaLR 4 379 -1008 3 880 291 304 80 35 chr5 38727503 38727625 -113809634 - PB1D10 SINE Alu -15 134 10 3 880 291 275 10 81 chr5 38727966 38728065 -113809194 + MER103 DNA DNA 74 165 -1 3 880 360 0 0 0 chr5 38728379 38728419 -113808840 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 880 1079 322 7 7 chr5 38729673 38729964 -113807295 - B4A SINE B4 0 292 2 3 880 1121 290 46 19 chr5 38730058 38730424 -113806835 - MTEa LTR MaLR -2 377 2 3 880 1060 254 36 123 chr5 38731055 38731477 -113805782 + MTE2a LTR MaLR 6 404 -15 3 880 333 327 0 28 chr5 38731514 38731621 -113805638 - B4 SINE B4 -183 109 6 3 880 688 259 197 11 chr5 38731642 38731911 -113805348 + RMER21B LTR ERV1 249 567 -275 3 880 296 243 0 86 chr5 38731918 38731999 -113805260 + RMER21B LTR ERV1 761 834 -113 3 880 2830 168 64 17 chr5 38732430 38733005 -113804254 + RMER1C Other Other 739 1340 -2 3 880 527 353 33 21 chr5 38733072 38733312 -113803947 + MLT1H1 LTR MaLR 313 555 0 3 880 415 295 85 111 chr5 38733318 38733634 -113803625 + MLT1K LTR MaLR 288 595 0 3 880 1154 275 226 24 chr5 38735294 38735998 -113801261 - Lx8 LINE L1 -35 7438 6593 3 880 608 289 5 92 chr5 38736318 38736535 -113800724 + B3A SINE B2 1 198 0 3 880 30 27 0 0 chr5 38736561 38736598 -113800661 + AT_rich Low_complexity Low_complexity 1 37 0 3 880 319 330 156 54 chr5 38736598 38736803 -113800456 - MLT1H2 LTR MaLR -38 451 226 3 880 1173 171 55 5 chr5 38736857 38737057 -113800202 - B3 SINE B2 -6 210 1 3 880 342 115 0 0 chr5 38737435 38737487 -113799772 + (T)n Simple_repeat Simple_repeat 1 52 0 3 880 582 247 107 54 chr5 38738619 38738824 -113798435 - B4A SINE B4 0 292 77 3 880 322 296 107 82 chr5 38739528 38739845 -113797414 - L1MD2 LINE L1 -6210 337 13 3 880 228 326 54 11 chr5 38740804 38740897 -113796362 + L2b LINE L2 3269 3365 -10 3 880 361 275 25 0 chr5 38741547 38741627 -113795632 - MER117 DNA MER1_type -42 155 74 3 880 522 203 59 63 chr5 38743190 38743336 -113793923 + B4A SINE B4 16 162 -130 3 880 194 263 99 14 chr5 38743657 38743749 -113793510 + MIR SINE MIR 118 215 -53 3 880 408 324 110 0 chr5 38744415 38744588 -113792671 + MLT1A0 LTR MaLR 73 264 -101 3 880 2598 105 18 48 chr5 38745688 38746088 -113791171 - ORR1B1 LTR MaLR 0 394 7 3 880 250 323 0 0 chr5 38747388 38747450 -113789809 + C-rich Low_complexity Low_complexity 5 66 0 3 880 286 273 107 84 chr5 38749350 38749601 -113787658 + ORR1E LTR MaLR 49 286 -81 3 880 348 24 0 0 chr5 38749890 38749931 -113787328 + (TTA)n Simple_repeat Simple_repeat 2 42 0 3 880 1305 246 21 11 chr5 38749948 38750235 -113787024 - B4A SINE B4 -2 290 1 3 880 255 338 88 7 chr5 38750272 38750409 -113786850 - MIR SINE MIR -78 184 37 3 880 468 0 0 0 chr5 38750499 38750551 -113786708 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 880 582 82 0 0 chr5 38750551 38750636 -113786623 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 3 880 437 321 66 6 chr5 38750931 38751097 -113786162 + MIR SINE MIR 11 186 -76 3 880 1473 23 0 0 chr5 38751611 38751784 -113785475 + (CA)n Simple_repeat Simple_repeat 1 173 0 3 880 233 234 46 15 chr5 38752051 38752116 -113785143 + L2b LINE L2 3302 3368 -7 3 880 250 309 115 84 chr5 38752929 38753155 -113784104 + LTR86B2 LTR ERVL 133 365 -122 3 880 229 345 53 56 chr5 38753155 38753395 -113783864 + L2a LINE L2 2885 3128 -298 3 880 404 267 13 40 chr5 38753747 38753899 -113783360 + GA-rich Low_complexity Low_complexity 2 149 0 3 880 429 20 0 0 chr5 38753949 38753999 -113783260 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 880 600 14 0 0 chr5 38754869 38754938 -113782321 + (TC)n Simple_repeat Simple_repeat 1 69 0 4 880 2132 104 25 19 chr5 38755254 38755578 -113781681 + RLTR26 LTR ERVK 1 326 -316 4 880 190 261 177 32 chr5 38757639 38757797 -113779462 - MIRc SINE MIR -55 213 33 4 880 208 338 86 7 chr5 38759186 38759326 -113777933 - MIRb SINE MIR -117 151 1 4 880 577 254 0 9 chr5 38759375 38759490 -113777769 + ID_B1 SINE B4 100 213 -11 4 880 270 0 0 0 chr5 38759492 38759522 -113777737 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 880 195 129 0 0 chr5 38759522 38759553 -113777706 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 880 266 300 0 29 chr5 38760026 38760129 -113777130 + (ATGGTG)n Simple_repeat Simple_repeat 6 105 0 4 880 1087 273 58 24 chr5 38760132 38760462 -113776797 + MLT1A0 LTR MaLR 4 344 -21 4 880 320 325 53 35 chr5 38760515 38760684 -113776575 - HAL1-2a_MD LINE L1 -508 2516 2345 4 880 695 307 120 20 chr5 38760804 38761205 -113776054 - L1M2 LINE L1 -1465 5377 4910 4 880 636 329 55 38 chr5 38761201 38762040 -113775219 - L1M2 LINE L1 -3834 3008 2149 4 880 240 255 0 18 chr5 38762315 38762371 -113774888 + GA-rich Low_complexity Low_complexity 2 56 0 4 880 373 295 61 69 chr5 38762371 38762391 -113774868 + MLT1B LTR MaLR 245 268 -122 4 880 970 67 42 12 chr5 38762391 38762558 -113774701 + (GGGAGA)n Simple_repeat Simple_repeat 2 173 0 4 880 373 295 61 69 chr5 38762558 38762668 -113774591 + MLT1B LTR MaLR 269 374 -16 4 880 239 224 36 84 chr5 38762879 38762962 -113774297 + MT2B LTR ERVL 156 234 -367 4 880 365 200 35 70 chr5 38762895 38762976 -113774283 + B1_Mur2 SINE Alu 10 87 -62 4 880 781 258 125 127 chr5 38762976 38763023 -113774236 - MT2B LTR ERVL 0 533 489 4 880 635 25 12 0 chr5 38763023 38763104 -113774155 + (TTTC)n Simple_repeat Simple_repeat 4 85 0 4 880 928 249 113 117 chr5 38763104 38763585 -113773674 - MT2B LTR ERVL -31 570 4 4 880 231 146 0 0 chr5 38763586 38763627 -113773632 + (A)n Simple_repeat Simple_repeat 1 41 0 4 880 249 259 0 0 chr5 38763990 38764044 -113773215 + GA-rich Low_complexity Low_complexity 6 59 0 4 880 703 138 94 31 chr5 38764061 38764188 -113773071 + B1_Mur4 SINE Alu 9 143 -7 4 880 279 71 0 0 chr5 38764189 38764231 -113773028 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 4 880 310 303 50 0 chr5 38764537 38764636 -113772623 - MLT1D LTR MaLR -3 502 399 4 880 287 282 83 90 chr5 38764782 38764850 -113772409 + ORR1D1 LTR MaLR 6 68 -306 4 880 459 0 0 0 chr5 38764850 38764901 -113772358 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 880 297 0 0 0 chr5 38764901 38764933 -113772326 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 880 287 295 81 67 chr5 38764933 38765064 -113772195 + ORR1D1 LTR MaLR 69 228 -131 4 880 243 0 0 0 chr5 38765072 38765099 -113772160 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 880 242 247 19 160 chr5 38765099 38765205 -113772054 + ORR1B1 LTR MaLR 91 181 -178 4 880 610 113 279 0 chr5 38765655 38765785 -113771474 + ORR1B1 LTR MaLR 160 391 -3 4 880 965 233 70 130 chr5 38765882 38766267 -113770992 + MTE2a LTR MaLR 1 362 -17 4 880 283 356 49 40 chr5 38766464 38766689 -113770570 + LTR33 LTR ERVL 253 479 -36 4 880 330 26 0 0 chr5 38767631 38767670 -113769589 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 880 1786 118 119 14 chr5 38767675 38767857 -113769402 + RMER17C LTR ERVK 2 187 -223 4 880 674 24 12 0 chr5 38767857 38767941 -113769318 + (TC)n Simple_repeat Simple_repeat 2 86 0 4 880 1786 118 119 14 chr5 38767941 38768112 -113769147 + RMER17C LTR ERVK 188 391 -19 4 880 496 278 33 46 chr5 38768819 38768970 -113768289 - RSINE1 SINE B4 -4 161 13 4 880 183 333 104 15 chr5 38769060 38769194 -113768065 + MIR SINE MIR 4 149 -113 4 880 1798 187 112 23 chr5 38769547 38769931 -113767328 - MTD LTR MaLR -1 418 1 4 880 441 0 0 0 chr5 38769976 38770025 -113767234 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 880 213 320 155 29 chr5 38770183 38770286 -113766973 - ID_B1 SINE B4 -93 131 16 4 880 209 397 0 41 chr5 38770481 38770602 -113766657 - MIR SINE MIR -117 145 30 4 880 1236 151 59 32 chr5 38771487 38771706 -113765553 - URR1B DNA MER1_type 0 225 1 4 880 189 0 0 0 chr5 38771971 38771992 -113765267 + (T)n Simple_repeat Simple_repeat 1 21 0 4 880 183 286 122 32 chr5 38772325 38772448 -113764811 + MIRc SINE MIR 21 154 -114 4 880 1161 182 66 0 chr5 38772456 38772654 -113764605 + B3 SINE B2 1 211 -5 4 880 234 345 57 15 chr5 38772963 38773138 -113764121 - MIR3 SINE MIR -15 193 9 4 880 573 15 0 0 chr5 38773389 38773455 -113763804 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 880 711 266 86 7 chr5 38774217 38774475 -113762784 - Lx7 LINE L1 -1804 5892 5607 4 880 714 138 0 0 chr5 38774636 38774759 -113762500 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 4 880 193 266 118 51 chr5 38775272 38775341 -113761918 + MIRb SINE MIR 34 113 -155 4 880 207 0 0 0 chr5 38775341 38775364 -113761895 + (ACTG)n Simple_repeat Simple_repeat 4 26 0 4 880 193 266 118 51 chr5 38775364 38775472 -113761787 + MIRb SINE MIR 114 223 -45 4 880 299 333 64 27 chr5 38775623 38775749 -113761510 - MIR SINE MIR -12 250 117 4 880 207 0 0 0 chr5 38775749 38775772 -113761487 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 4 880 299 333 64 27 chr5 38775772 38775833 -113761426 - MIR SINE MIR -146 116 56 4 880 597 152 15 15 chr5 38776235 38776369 -113760890 + GA-rich Low_complexity Low_complexity 3 136 0 4 880 958 96 7 0 chr5 38777069 38777205 -113760054 + URR1A DNA MER1_type 78 214 -12 4 880 299 214 221 10 chr5 38777641 38777745 -113759514 - L1ME1 LINE L1 -103 6076 5951 4 880 216 0 0 0 chr5 38777803 38777827 -113759432 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 880 835 290 148 8 chr5 38777838 38778416 -113758843 - L1ME1 LINE L1 -354 5825 5169 4 880 585 271 107 64 chr5 38779074 38779354 -113757905 - MLT1C LTR MaLR -148 319 28 4 880 273 345 124 72 chr5 38780265 38780739 -113756520 - MLT1D LTR MaLR -6 499 1 4 880 200 333 19 75 chr5 38780759 38780866 -113756393 - MIR SINE MIR -63 145 45 4 880 785 140 7 0 chr5 38780914 38781050 -113756209 + (GA)n Simple_repeat Simple_repeat 2 138 0 4 880 198 346 173 0 chr5 38781217 38781344 -113755915 - MIR SINE MIR -93 169 21 4 880 2089 52 0 0 chr5 38781961 38782212 -113755047 + L1Md_T LINE L1 6332 6582 0 4 880 576 91 0 0 chr5 38782241 38782318 -113754941 + RLTR10C LTR ERVK 314 390 -46 4 880 181 262 180 0 chr5 38782682 38782743 -113754516 - MIRc SINE MIR -134 134 63 4 880 408 264 80 65 chr5 38783408 38783546 -113753713 - RSINE1 SINE B4 -22 143 4 4 880 237 341 68 79 chr5 38784041 38784321 -113752938 + RMER10A LTR ERVL 19 295 -147 4 880 534 155 0 0 chr5 38784321 38784418 -113752841 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 880 318 148 0 0 chr5 38784417 38784471 -113752788 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 4 880 327 306 92 0 chr5 38786575 38786673 -113750586 - ORR1E LTR MaLR -252 107 1 4 880 402 302 127 48 chr5 38786726 38787042 -113750217 + MLT1D LTR MaLR 17 357 -148 4 880 522 0 0 0 chr5 38787613 38787671 -113749588 + (TC)n Simple_repeat Simple_repeat 2 59 0 4 880 425 50 17 0 chr5 38787671 38787730 -113749529 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 880 386 237 62 0 chr5 38787732 38787829 -113749430 - B4 SINE B4 -23 269 167 4 880 220 250 0 77 chr5 38789349 38789414 -113747845 - L3 LINE CR1 -114 4375 4316 4 880 227 276 107 49 chr5 38789729 38789851 -113747408 - MIR SINE MIR -118 144 16 4 880 220 250 0 0 chr5 38789896 38789936 -113747323 + (CG)n Simple_repeat Simple_repeat 2 41 0 4 880 186 360 146 0 chr5 38790251 38790340 -113746919 - MIR SINE MIR -68 140 39 4 880 225 324 14 14 chr5 38792000 38792072 -113745187 + MLT1J LTR MaLR 320 391 -121 4 880 258 169 0 92 chr5 38793304 38793369 -113743890 + RMER6B LTR ERVK 372 430 -31 4 880 374 191 165 50 chr5 38793558 38793622 -113743637 + ID_B1 SINE B4 87 163 -61 4 880 1547 217 70 31 chr5 38793622 38793978 -113743281 + ORR1D2 LTR MaLR 1 370 0 4 880 374 191 165 50 chr5 38793978 38794034 -113743225 + ID_B1 SINE B4 164 221 -3 4 880 384 22 0 0 chr5 38794036 38794081 -113743178 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 4 880 263 317 34 14 chr5 38794209 38794356 -113742903 + Charlie7 DNA MER1_type 1693 1842 -770 4 880 304 309 39 34 chr5 38794359 38794504 -113742755 + B4A SINE B4 3 143 -149 4 880 294 91 24 61 chr5 38794539 38794621 -113742638 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 4 880 235 308 40 11 chr5 38794627 38794723 -113742536 + B4 SINE B4 201 281 -11 4 880 528 91 0 0 chr5 38794747 38794835 -113742424 + (GA)n Simple_repeat Simple_repeat 2 89 0 4 880 305 281 52 58 chr5 38794856 38795011 -113742248 + Charlie7 DNA MER1_type 1940 2093 -519 4 880 429 20 0 0 chr5 38795153 38795203 -113742056 + (TC)n Simple_repeat Simple_repeat 1 50 0 4 880 396 0 0 0 chr5 38795203 38795246 -113742013 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 880 274 341 24 0 chr5 38796120 38796202 -113741057 - MLT1A LTR MaLR -290 84 1 4 880 3042 21 0 0 chr5 38796929 38797266 -113739993 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 13 54552 21 8 9 chr5 38797266 38803751 -113733508 + IAPEz-int LTR ERVK 8 6481 0 4 881 3078 15 0 0 chr5 38803751 38804088 -113733171 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 881 208 290 134 22 chr5 38805265 38805399 -113731860 + MIRm SINE MIR 38 186 -90 4 881 226 236 94 29 chr5 38805485 38805653 -113731606 + L2c LINE L2 2984 3164 -223 4 881 228 315 207 39 chr5 38806401 38806609 -113730650 + ORR1E LTR MaLR 97 339 -20 4 881 272 279 0 0 chr5 38806810 38806878 -113730381 - PB1D7 SINE Alu -1 119 52 4 881 2209 150 148 27 chr5 38806878 38807289 -113729970 + RMER6B LTR ERVK 1 461 0 4 881 1215 76 0 0 chr5 38807294 38807439 -113729820 + B1_Mus2 SINE Alu 1 145 -2 4 881 256 98 16 32 chr5 38807443 38807506 -113729753 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 4 881 246 310 22 134 chr5 38807537 38807575 -113729684 - B4 SINE B4 -169 123 48 4 881 337 239 0 0 chr5 38807575 38807652 -113729607 - ID4_ SINE ID -55 97 21 4 881 246 310 22 134 chr5 38807652 38807671 -113729588 - B4 SINE B4 -169 47 5 4 881 294 29 0 0 chr5 38807776 38807811 -113729448 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 881 185 279 133 9 chr5 38808612 38808717 -113728542 + L2 LINE L2 31 148 -3271 4 881 1153 91 17 0 chr5 38809274 38809450 -113727809 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 5 881 228 296 96 28 chr5 38809926 38810103 -113727156 + L1MB7 LINE L1 5971 6159 -25 5 881 832 206 116 49 chr5 38810145 38810369 -113726890 + MER2 DNA MER2_type 17 255 -90 5 881 1287 75 21 26 chr5 38811443 38811635 -113725624 - B2_Mm2 SINE B2 0 195 5 5 881 263 208 0 20 chr5 38813260 38813309 -113723950 - MIRc SINE MIR -101 167 120 5 881 307 176 49 58 chr5 38814437 38814660 -113722599 + RMER17D2 LTR ERVK 254 474 -335 5 881 884 153 170 27 chr5 38814722 38814910 -113722349 + B3 SINE B2 2 216 0 5 881 537 16 0 0 chr5 38815562 38815624 -113721635 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 881 4817 142 53 98 chr5 38816420 38817365 -113719894 + RMER19B LTR ERVK 1 902 0 5 881 277 313 29 48 chr5 38817447 38817551 -113719708 - MER5B DNA MER1_type -76 102 1 5 881 1574 210 83 0 chr5 38818661 38818985 -113718274 + MTD LTR MaLR 61 411 -8 5 881 408 339 71 5 chr5 38819487 38819671 -113717588 - MIRc SINE MIR -57 211 16 5 881 274 352 63 8 chr5 38819767 38819893 -113717366 + L2c LINE L2 3023 3155 -232 5 881 887 188 52 28 chr5 38820717 38820913 -113716346 - ORR1D1 LTR MaLR 0 374 172 5 881 442 260 175 0 chr5 38820913 38821067 -113716192 + B3 SINE B2 4 184 -32 5 881 567 107 0 0 chr5 38821088 38821172 -113716087 + (TA)n Simple_repeat Simple_repeat 2 85 0 5 881 1338 129 0 5 chr5 38821732 38821927 -113715332 + B2_Mm2 SINE B2 2 195 0 5 881 924 124 0 7 chr5 38822220 38822358 -113714901 + B1_Mus2 SINE Alu 11 147 0 5 881 210 305 0 0 chr5 38823490 38823549 -113713710 + CT-rich Low_complexity Low_complexity 2 60 0 5 881 388 275 9 27 chr5 38824231 38824343 -113712916 + B3 SINE B2 107 216 0 5 881 552 209 95 0 chr5 38824351 38824499 -113712760 + L1M2 LINE L1 5367 5528 -784 5 881 276 245 262 9 chr5 38825692 38825799 -113711460 + RSINE1 SINE B4 4 137 -28 5 881 207 0 0 0 chr5 38825808 38825831 -113711428 + (TC)n Simple_repeat Simple_repeat 1 23 0 5 881 189 0 0 0 chr5 38825831 38825851 -113711408 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 881 1374 99 5 0 chr5 38827144 38827335 -113709924 + B2_Mm1t SINE B2 2 193 0 5 881 690 234 47 62 chr5 38828080 38828328 -113708931 + ORR1D2 LTR MaLR 9 210 -116 5 881 581 283 55 66 chr5 38828371 38828628 -113708631 - Tigger7 DNA MER2_type -1 2490 2238 5 881 1443 75 5 0 chr5 38828859 38829045 -113708214 + B2_Mm1a SINE B2 1 187 -6 5 881 825 229 74 47 chr5 38829172 38829387 -113707872 - ID_B1 SINE B4 -3 221 1 5 881 186 154 0 25 chr5 38829858 38829898 -113707361 + MIR SINE MIR 44 82 -180 5 881 496 246 110 0 chr5 38830355 38830473 -113706786 + RSINE1 SINE B4 13 143 -22 5 881 1908 111 210 0 chr5 38830535 38830859 -113706400 + ORR1B1 LTR MaLR 1 392 -2 5 881 265 316 93 28 chr5 38831168 38831383 -113705876 + L2b LINE L2 2912 3140 -235 5 881 223 246 33 0 chr5 38832676 38832737 -113704522 + CT-rich Low_complexity Low_complexity 1 63 0 5 881 217 265 43 0 chr5 38833031 38833126 -113704133 - MIRb SINE MIR -8 260 154 5 881 546 168 0 0 chr5 38833682 38833795 -113703464 + (TG)n Simple_repeat Simple_repeat 2 114 0 5 881 714 345 33 12 chr5 38834020 38834261 -113702998 - Tigger7 DNA MER2_type -2231 260 15 5 881 261 340 0 80 chr5 38834446 38834558 -113702701 + LTR33A_ LTR ERVL 276 378 -153 5 881 2752 52 25 5 chr5 38835221 38835589 -113701670 + L1Md_F2 LINE L1 5212 5586 -297 5 881 7941 63 2 2 chr5 38835589 38836573 -113700686 + L1Md_F2 LINE L1 5587 6570 -12 5 881 1149 208 0 5 chr5 38836573 38836776 -113700483 - B3 SINE B2 -14 202 1 5 881 188 362 57 14 chr5 38837462 38837602 -113699657 - L2 LINE L2 -730 2689 2544 5 881 519 341 26 73 chr5 38839226 38839539 -113697720 - RLTR25B LTR ERVK -730 298 1 5 881 783 254 29 39 chr5 38839863 38840068 -113697191 - B4A SINE B4 -88 204 2 5 881 260 303 187 0 chr5 38840124 38840279 -113696980 + MLT1K LTR MaLR 373 556 -39 5 881 468 0 0 0 chr5 38840565 38840617 -113696642 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 881 180 0 0 0 chr5 38840617 38840636 -113696623 + (TA)n Simple_repeat Simple_repeat 1 20 0 5 881 513 0 0 0 chr5 38841254 38841311 -113695948 + (GGA)n Simple_repeat Simple_repeat 1 57 0 5 881 230 295 31 83 chr5 38843154 38843250 -113694009 - MIRb SINE MIR -142 126 36 5 881 324 0 0 0 chr5 38843268 38843304 -113693955 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 881 188 235 0 14 chr5 38843482 38843551 -113693708 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 881 1118 251 28 35 chr5 38843569 38843854 -113693405 - B4 SINE B4 -6 286 4 5 881 196 277 138 0 chr5 38844702 38844767 -113692492 + MIRm SINE MIR 9 82 -194 5 881 614 278 56 31 chr5 38844949 38845109 -113692150 + RSINE1 SINE B4 2 165 0 5 881 34986 59 2 1 chr5 38845122 38850970 -113686289 - L1Md_F2 LINE L1 -10 6572 715 5 881 343 261 81 0 chr5 38850961 38851072 -113686187 - L1VL1 LINE L1 -6110 312 193 5 881 225 274 36 0 chr5 38851088 38851172 -113686087 + L1ME3B LINE L1 5193 5279 -867 5 881 885 227 57 0 chr5 38851200 38851394 -113685865 + B3 SINE B2 2 206 -10 5 881 327 274 126 0 chr5 38851401 38851536 -113685723 + L1ME3B LINE L1 5292 5443 -721 5 881 405 335 85 54 chr5 38851888 38852147 -113685112 + L1ME3B LINE L1 5603 5869 -371 5 881 184 342 44 26 chr5 38852996 38853110 -113684149 - MIRc SINE MIR -102 166 51 5 881 776 196 105 30 chr5 38853144 38853344 -113683915 - B3 SINE B2 0 216 2 5 881 194 91 17 52 chr5 38853562 38853620 -113683639 + T-rich Low_complexity Low_complexity 1 56 0 5 881 846 146 0 30 chr5 38853620 38853754 -113683505 - B1_Mus1 SINE Alu -18 130 1 5 881 933 245 19 5 chr5 38853772 38853977 -113683282 - B3 SINE B2 -3 213 6 5 881 3347 46 2 2 chr5 38853984 38854380 -113682879 - MTA_Mm LTR MaLR 0 396 1 5 881 360 361 6 54 chr5 38854406 38854573 -113682686 - B4 SINE B4 0 292 134 5 881 186 133 0 0 chr5 38855914 38855944 -113681315 + (CAG)n Simple_repeat Simple_repeat 1 30 0 5 881 349 275 135 72 chr5 38856073 38856273 -113680986 + MIRb SINE MIR 35 239 -29 5 881 837 196 0 7 chr5 38858439 38858588 -113678671 + B1_Mus1 SINE Alu 1 148 0 5 881 614 196 43 86 chr5 38858601 38858858 -113678401 + RMER17C LTR ERVK 1 246 -164 5 881 1198 199 27 36 chr5 38858859 38859193 -113678066 + RMER17C LTR ERVK 80 410 0 5 881 677 230 62 73 chr5 38859326 38859518 -113677741 + MER58A DNA MER1_type 34 223 -1 5 881 667 323 110 32 chr5 38859777 38860186 -113677073 - L2a LINE L2 -12 3414 2974 5 881 824 37 9 0 chr5 38860861 38860969 -113676290 + (GA)n Simple_repeat Simple_repeat 1 109 0 5 881 22 0 0 0 chr5 38861032 38861054 -113676205 + AT_rich Low_complexity Low_complexity 1 22 0 5 881 221 322 148 19 chr5 38861803 38862012 -113675247 + L2c LINE L2 3135 3370 -17 5 881 283 283 65 16 chr5 38862385 38862499 -113674760 + MIRb SINE MIR 1 116 -92 5 881 2188 118 21 12 chr5 38862701 38863035 -113674224 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 881 6274 63 13 13 chr5 38863037 38863887 -113673372 - IAPEz-int LTR ERVK -2 6479 5630 5 881 23540 45 30 14 chr5 38863873 38866892 -113670367 - IAPEz-int LTR ERVK -3405 3076 8 5 881 2188 118 21 12 chr5 38866892 38867226 -113670033 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 881 375 238 0 48 chr5 38867255 38867339 -113669920 - ID4 SINE ID -3 80 1 5 881 193 98 49 0 chr5 38867488 38867529 -113669730 + (CCCCCG)n Simple_repeat Simple_repeat 5 47 0 5 881 209 204 36 18 chr5 38867556 38867611 -113669648 + L2c LINE L2 3118 3173 -214 5 881 313 236 0 0 chr5 38867596 38867651 -113669608 + L2c LINE L2 3331 3385 -2 5 881 202 226 94 0 chr5 38869018 38869071 -113668188 - MIR SINE MIR -8 254 197 5 881 188 260 0 39 chr5 38869795 38869847 -113667412 + MIR SINE MIR 110 159 -103 5 881 830 62 23 8 chr5 38869887 38870018 -113667241 + (GAAA)n Simple_repeat Simple_repeat 1 133 0 5 881 367 308 17 8 chr5 38870255 38870373 -113666886 + MIR SINE MIR 53 171 -91 5 881 735 90 0 0 chr5 38870742 38870864 -113666395 + (TC)n Simple_repeat Simple_repeat 1 122 0 5 881 369 0 0 0 chr5 38870864 38870904 -113666355 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 881 567 0 0 0 chr5 38871079 38871142 -113666117 + (GA)n Simple_repeat Simple_repeat 1 63 0 5 881 262 310 99 19 chr5 38871719 38871880 -113665379 + MIRc SINE MIR 35 208 -60 5 881 219 88 0 0 chr5 38872971 38873005 -113664254 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 5 881 191 204 19 0 chr5 38873006 38873060 -113664199 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 881 384 228 25 0 chr5 38874036 38874115 -113663144 - B4A SINE B4 -17 275 195 5 881 319 184 117 48 chr5 38874703 38874806 -113662453 + B1F SINE Alu 35 144 -5 5 881 328 235 25 0 chr5 38874727 38874808 -113662451 + ID_B1 SINE B4 139 221 -3 5 881 512 169 0 24 chr5 38874819 38874904 -113662355 + ID4 SINE ID 1 83 0 5 881 198 0 0 0 chr5 38874904 38874926 -113662333 + (A)n Simple_repeat Simple_repeat 1 22 0 5 881 295 248 9 9 chr5 38875629 38875735 -113661524 + GA-rich Low_complexity Low_complexity 4 109 0 5 881 1217 134 37 65 chr5 38875985 38876200 -113661059 + URR1B DNA MER1_type 1 209 -16 5 881 262 88 73 0 chr5 38876369 38876437 -113660822 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 881 1016 244 82 50 chr5 38876486 38876766 -113660493 - B4A SINE B4 -2 290 2 5 881 709 219 68 73 chr5 38876803 38876995 -113660264 + B3A SINE B2 3 193 -5 5 881 454 201 0 75 chr5 38877476 38877664 -113659595 + G-rich Low_complexity Low_complexity 4 177 0 5 881 298 230 0 75 chr5 38877670 38877844 -113659415 + GA-rich Low_complexity Low_complexity 4 164 0 5 881 23 68 0 0 chr5 38877992 38878036 -113659223 + AT_rich Low_complexity Low_complexity 1 44 0 5 881 765 33 0 0 chr5 38878440 38878532 -113658727 + (TC)n Simple_repeat Simple_repeat 2 93 0 6 881 240 300 0 12 chr5 38878573 38878654 -113658605 + (TG)n Simple_repeat Simple_repeat 1 80 0 6 881 876 316 89 73 chr5 38878736 38879176 -113658083 + MLT2C2 LTR ERVL 12 458 -6 6 881 267 259 35 0 chr5 38879684 38879742 -113657517 + MLT2C2 LTR ERVL 438 497 -62 6 881 488 286 48 86 chr5 38880862 38881072 -113656187 - RMER30 DNA MER1_type 0 202 1 6 881 251 288 139 35 chr5 38881297 38881441 -113655818 + MIR SINE MIR 36 194 -68 6 881 286 315 50 78 chr5 38881864 38882005 -113655254 - MamRep38 DNA hAT -94 201 65 6 881 554 227 62 43 chr5 38882455 38882616 -113654643 + RSINE1 SINE B4 2 165 0 6 881 220 333 21 31 chr5 38882950 38883046 -113654213 - MIRb SINE MIR -36 232 138 6 881 646 233 141 45 chr5 38883894 38884136 -113653123 - MTD LTR MaLR -32 387 143 6 881 185 314 116 0 chr5 38884202 38884288 -113652971 - MIRm SINE MIR -160 116 21 6 881 261 83 0 0 chr5 38884325 38884361 -113652898 + (CAGG)n Simple_repeat Simple_repeat 4 39 0 6 881 2331 188 14 10 chr5 38884406 38884820 -113652439 + MTC LTR MaLR 6 421 0 6 881 1954 176 38 25 chr5 38885024 38885392 -113651867 - ORR1C1 LTR MaLR -4 374 2 6 881 3545 56 162 18 chr5 38885884 38886377 -113650882 + LTRIS2 LTR ERV1 1 564 0 6 881 531 283 204 13 chr5 38887383 38887618 -113649641 - B4 SINE B4 -12 280 1 6 881 264 294 70 44 chr5 38887752 38887866 -113649393 + MIRb SINE MIR 20 136 -132 6 881 577 296 0 0 chr5 38888810 38888942 -113648317 - B1_Mur1 SINE Alu -2 147 16 6 881 563 217 143 49 chr5 38889128 38889387 -113647872 + RMER20B LTR ERVK 206 476 -151 6 881 180 0 0 0 chr5 38889389 38889409 -113647850 + (CACCC)n Simple_repeat Simple_repeat 1 20 0 6 881 239 79 0 26 chr5 38889439 38889478 -113647781 + (TAA)n Simple_repeat Simple_repeat 3 40 0 6 881 188 363 57 29 chr5 38889609 38889714 -113647545 - MIRb SINE MIR -72 196 89 6 881 196 281 18 0 chr5 38890060 38890117 -113647142 + MIRc SINE MIR 96 153 -115 6 881 288 299 128 28 chr5 38890285 38890426 -113646833 + MER2 DNA MER2_type 164 318 -27 6 881 226 233 0 0 chr5 38891089 38891132 -113646127 - MIRc SINE MIR -145 123 81 6 881 820 137 0 30 chr5 38891154 38891289 -113645970 + B1_Mur4 SINE Alu 1 131 -19 6 881 1118 167 239 38 chr5 38891306 38891729 -113645530 + RMER19B LTR ERVK 317 664 -238 6 881 1631 182 51 39 chr5 38891820 38892209 -113645050 - RCHARR1 DNA MER1_type -29 945 552 6 881 841 196 20 56 chr5 38892212 38892407 -113644852 + B3A SINE B2 6 193 -5 6 881 207 0 0 0 chr5 38892410 38892433 -113644826 + (A)n Simple_repeat Simple_repeat 1 23 0 6 881 1472 237 119 35 chr5 38892449 38892878 -113644381 - RCHARR1 DNA MER1_type -493 481 17 6 881 384 282 61 46 chr5 38893659 38893869 -113643390 - B3A SINE B2 -10 206 1 6 881 435 250 0 0 chr5 38893978 38894094 -113643165 + C-rich Low_complexity Low_complexity 1 116 0 6 881 297 208 0 0 chr5 38895117 38895189 -113642070 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 881 204 348 26 35 chr5 38895357 38895473 -113641786 + L2b LINE L2 3241 3355 -20 6 881 220 320 30 30 chr5 38896634 38896734 -113640525 - MIRb SINE MIR -167 101 2 6 881 344 224 100 20 chr5 38896876 38896976 -113640283 - PB1D10 SINE Alu -8 109 2 6 881 266 288 0 8 chr5 38898107 38898240 -113639019 + (TG)n Simple_repeat Simple_repeat 1 132 0 6 881 568 252 25 44 chr5 38898543 38898701 -113638558 + RLTR11B LTR ERVK 10 164 -289 6 881 562 313 42 35 chr5 38899204 38899492 -113637767 + BGLII_B LTR ERVK 125 414 -27 6 881 1313 218 102 25 chr5 38899647 38899971 -113637288 - MTEa LTR MaLR -3 376 28 6 881 3221 118 7 15 chr5 38900034 38900499 -113636760 - RMER6B LTR ERVK 0 461 1 6 881 289 354 27 27 chr5 38900749 38900897 -113636362 - MTE2b LTR MaLR -163 216 69 6 881 368 221 11 23 chr5 38901140 38901228 -113636031 + MLT1A1 LTR MaLR 300 386 -22 6 881 252 0 0 0 chr5 38901230 38901258 -113636001 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 881 402 329 155 57 chr5 38901748 38902074 -113635185 + MLT1F2 LTR MaLR 43 399 -170 6 881 2089 132 76 76 chr5 38902349 38902743 -113634516 + ORR1B1 LTR MaLR 1 394 0 6 881 1731 137 33 141 chr5 38903144 38903604 -113633655 + RMER17C LTR ERVK 1 410 0 6 881 265 318 0 0 chr5 38903669 38903732 -113633527 + B1F SINE Alu 2 64 -85 6 881 261 311 139 40 chr5 38905012 38905213 -113632046 + MER34 LTR ERV1 4 224 -318 6 881 201 94 0 0 chr5 38905944 38905976 -113631283 + (TC)n Simple_repeat Simple_repeat 1 32 0 6 881 460 329 68 83 chr5 38906510 38906587 -113630672 - MLT2B2 LTR ERVL 0 515 439 6 881 2030 161 50 3 chr5 38906587 38906948 -113630311 + ORR1C1 LTR MaLR 1 378 0 6 881 460 325 83 96 chr5 38906948 38907183 -113630076 - MLT2B2 LTR ERVL -66 488 246 6 881 263 147 52 26 chr5 38907184 38907261 -113629998 + GA-rich Low_complexity Low_complexity 1 79 0 6 881 1022 210 75 8 chr5 38907296 38907536 -113629723 + MTC LTR MaLR 134 389 -32 6 881 2686 48 54 0 chr5 38907819 38908155 -113629104 + L1_Mus1 LINE L1 6214 6567 0 6 881 1744 157 63 21 chr5 38908412 38908790 -113628469 - RMER17C LTR ERVK 0 410 17 6 881 1137 69 0 34 chr5 38908939 38909088 -113628171 - B1_Mus1 SINE Alu 0 148 5 6 881 309 299 95 89 chr5 38909183 38909352 -113627907 + MER20 DNA MER1_type 41 210 -9 6 881 324 277 36 12 chr5 38909485 38909569 -113627690 - MTEa LTR MaLR -4 375 290 6 881 1115 197 38 9 chr5 38909569 38909779 -113627480 + B3 SINE B2 1 216 0 6 881 417 243 46 9 chr5 38909853 38909961 -113627298 - RLTR18 LTR ERVK -1 615 504 6 881 1018 228 0 45 chr5 38909950 38910171 -113627088 - RLTR18 LTR ERVK -405 211 1 6 881 696 263 14 72 chr5 38910216 38910437 -113626822 - MTEa LTR MaLR -164 215 8 6 881 22 35 0 0 chr5 38910446 38910475 -113626784 + AT_rich Low_complexity Low_complexity 1 29 0 6 881 181 333 0 0 chr5 38910663 38910714 -113626545 + L2c LINE L2 3254 3304 -83 6 881 225 0 0 0 chr5 38911027 38911052 -113626207 + (A)n Simple_repeat Simple_repeat 1 25 0 6 881 888 157 54 33 chr5 38911371 38911555 -113625704 + B2_Mm2 SINE B2 1 188 -7 6 881 1284 62 85 0 chr5 38911565 38911741 -113625518 + B2_Mm1t SINE B2 1 191 -2 6 881 596 286 104 46 chr5 38912035 38912394 -113624865 + RMER20B LTR ERVK 126 492 -24 6 881 2091 90 88 20 chr5 38912467 38912772 -113624487 - ORR1A2 LTR MaLR -1 326 1 6 881 1776 174 48 3 chr5 38912778 38913089 -113624170 + ORR1A1 LTR MaLR 20 344 -2 6 881 1433 108 22 9 chr5 38913087 38913311 -113623948 + ORR1A1-int LTR MaLR 1 227 -1736 6 881 900 197 77 8 chr5 38913305 38913551 -113623708 - ORR1A2-int LTR MaLR -983 980 718 6 881 889 142 79 51 chr5 38913498 38913676 -113623583 - MT2B LTR ERVL -287 314 132 6 881 463 182 20 0 chr5 38913613 38913712 -113623547 - ORR1A2-int LTR MaLR -1205 758 658 6 881 268 256 51 13 chr5 38913780 38913859 -113623400 - ID4_ SINE ID 0 83 2 6 881 258 32 0 0 chr5 38913922 38913953 -113623306 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 881 562 183 90 19 chr5 38913954 38914110 -113623149 - Lx4A LINE L1 -1 7057 6891 6 881 747 87 0 0 chr5 38914798 38914902 -113622357 + (TC)n Simple_repeat Simple_repeat 2 105 0 6 881 337 294 125 26 chr5 38914984 38915176 -113622083 + Charlie1 DNA MER1_type 2234 2444 -337 6 881 349 263 0 0 chr5 38915597 38915673 -113621586 + ID_B1 SINE B4 110 185 -39 6 881 305 279 11 11 chr5 38915673 38915684 -113621575 + PB1D10 SINE Alu 29 115 -2 6 881 289 200 33 0 chr5 38915748 38915808 -113621451 + ID4 SINE ID 4 65 -18 6 881 684 212 288 40 chr5 38916050 38916429 -113620830 - Lx7 LINE L1 -4 7692 7220 6 881 22 56 0 0 chr5 38916954 38916990 -113620269 + AT_rich Low_complexity Low_complexity 1 36 0 6 881 431 349 42 14 chr5 38917121 38917333 -113619926 + B4A SINE B4 1 218 -74 6 881 275 336 44 26 chr5 38919545 38919658 -113617601 + MER2 DNA MER2_type 197 311 -34 6 881 277 260 180 40 chr5 38921722 38921822 -113615437 + MT2A LTR ERVL 1 114 -419 6 881 1355 86 27 0 chr5 38921827 38922013 -113615246 - B2_Mm1a SINE B2 -1 192 2 6 881 780 172 165 6 chr5 38922022 38922192 -113615067 + MT2A LTR ERVL 85 281 -252 6 881 579 281 106 40 chr5 38924169 38924421 -113612838 + MTD LTR MaLR 28 294 -85 6 881 1230 54 0 0 chr5 38924421 38924568 -113612691 + B1_Mm SINE Alu 1 147 0 6 881 518 283 145 115 chr5 38924568 38924654 -113612605 + MTD LTR MaLR 295 379 0 6 881 1297 47 0 0 chr5 38925559 38925707 -113611552 + B1_Mus1 SINE Alu 1 148 0 6 881 180 0 0 0 chr5 38926113 38926133 -113611126 + (T)n Simple_repeat Simple_repeat 1 20 0 6 881 442 315 47 0 chr5 38927940 38928089 -113609170 + MIR3 SINE MIR 48 203 -5 6 882 324 0 0 0 chr5 38928467 38928503 -113608756 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 882 1802 183 132 15 chr5 38930169 38930551 -113606708 + MTC LTR MaLR 1 386 -35 6 882 767 120 0 0 chr5 38933718 38933826 -113603433 - MERVL_2A-int LTR ERVL -2359 3402 3295 6 882 556 15 15 0 chr5 38937696 38937763 -113599496 + U4 snRNA snRNA 1 68 -77 6 882 255 333 42 42 chr5 38939192 38939336 -113597923 + MIR SINE MIR 107 250 -12 6 882 1082 131 6 12 chr5 38939403 38939573 -113597686 - URR1B DNA MER1_type 0 225 57 6 882 182 356 57 11 chr5 38940696 38940784 -113596475 + L2b LINE L2 3105 3196 -179 6 882 198 0 0 0 chr5 38941725 38941747 -113595512 + (CAGCC)n Simple_repeat Simple_repeat 5 26 0 6 882 186 315 110 9 chr5 38941837 38941946 -113595313 - MIRb SINE MIR -39 229 110 6 882 185 140 0 23 chr5 38942183 38942227 -113595032 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 6 882 180 233 117 0 chr5 38942831 38942891 -113594368 - L3 LINE CR1 -216 4273 4207 6 882 219 114 0 0 chr5 38942934 38942969 -113594290 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 882 408 162 250 28 chr5 38944102 38944210 -113593049 + RSINE1 SINE B4 3 134 -31 7 882 223 330 72 80 chr5 38946935 38947060 -113590199 - MIRc SINE MIR -130 138 15 7 882 341 55 36 0 chr5 38947704 38947759 -113589500 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 7 882 304 325 123 0 chr5 38948021 38948135 -113589124 - MER20 DNA MER1_type 0 219 92 7 882 797 149 33 0 chr5 38948436 38948557 -113588702 + B1_Mus1 SINE Alu 5 129 -19 7 882 210 143 0 0 chr5 38948834 38948869 -113588390 + (T)n Simple_repeat Simple_repeat 1 35 0 7 882 1087 42 0 2 chr5 38948869 38949016 -113588243 - B1_Mus2 SINE Alu 0 148 5 7 882 303 28 0 0 chr5 38950219 38950255 -113587004 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 882 228 296 41 75 chr5 38951860 38952006 -113585253 - MIRb SINE MIR -13 255 115 7 882 21 57 0 0 chr5 38952841 38952876 -113584383 + GC_rich Low_complexity Low_complexity 1 35 0 7 882 1618 168 61 71 chr5 38953963 38954374 -113582885 - RMER17C LTR ERVK 0 410 4 7 882 3249 127 18 14 chr5 38955562 38956074 -113581185 + RLTR28 LTR ERVL 1 514 -10 7 882 983 234 130 75 chr5 38957559 38957943 -113579316 - MTD LTR MaLR -5 414 10 7 882 3938 157 124 71 chr5 38958066 38958923 -113578336 - RMER19B LTR ERVK 0 902 1 7 882 536 178 246 0 chr5 38959407 38959525 -113577734 - B1_Mus2 SINE Alu 0 147 1 7 882 188 277 140 18 chr5 38959555 38959669 -113577590 - MIRb SINE MIR -109 159 32 7 882 701 154 21 14 chr5 38959698 38959843 -113577416 + Lx2A1 LINE L1 6863 7008 0 7 882 182 296 193 21 chr5 38960619 38960764 -113576495 + MIRm SINE MIR 14 183 -93 7 882 521 290 97 66 chr5 38960769 38961027 -113576232 - MLT1C LTR MaLR -3 464 199 7 882 1562 194 152 0 chr5 38961601 38961957 -113575302 - MTD LTR MaLR -8 411 2 7 882 311 109 65 0 chr5 38962830 38962876 -113574383 + HAL1-3A_ME LINE L1 1977 2025 -833 7 882 1894 227 148 27 chr5 38963931 38964443 -113572816 - RMER19B LTR ERVK -13 889 316 7 882 1139 58 0 0 chr5 38964543 38964681 -113572578 + B1_Mus1 SINE Alu 1 138 -10 7 882 243 0 0 0 chr5 38964681 38964708 -113572551 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 7 882 321 26 0 0 chr5 38964712 38964750 -113572509 + (GAA)n Simple_repeat Simple_repeat 2 39 0 7 882 1112 239 56 23 chr5 38965035 38965301 -113571958 + RMER19B LTR ERVK 346 620 -282 7 882 475 306 80 34 chr5 38965511 38965687 -113571572 - B4A SINE B4 -69 223 40 7 882 432 0 0 0 chr5 38965711 38965759 -113571500 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 882 300 255 108 10 chr5 38966026 38966127 -113571132 + ID_B1 SINE B4 65 175 -49 7 882 503 258 84 14 chr5 38966047 38966175 -113571084 + PB1D7 SINE Alu 9 136 -13 7 882 324 237 90 1 chr5 38967228 38967332 -113569927 + ORR1B1 LTR MaLR 262 394 0 7 882 207 0 0 0 chr5 38967999 38968022 -113569237 + (A)n Simple_repeat Simple_repeat 1 23 0 7 882 2155 271 41 33 chr5 38968249 38968856 -113568403 + RMER1C Other Other 494 1105 -237 7 882 1774 137 19 139 chr5 38968861 38969235 -113568024 + ORR1A4 LTR MaLR 1 329 0 7 882 583 252 88 6 chr5 38969237 38969397 -113567862 + RMER1C Other Other 1107 1279 -63 7 882 3026 35 0 0 chr5 38969740 38970086 -113567173 - ORR1A0 LTR MaLR 0 346 1 7 882 1360 23 34 17 chr5 38970869 38971048 -113566211 + L1Md_F3 LINE L1 6402 6583 -1 7 882 417 72 0 133 chr5 38971383 38971526 -113565733 + GA-rich Low_complexity Low_complexity 4 127 0 7 882 620 110 11 0 chr5 38971876 38971967 -113565292 - B2_Mm1t SINE B2 -98 95 4 7 882 398 340 94 40 chr5 38972811 38973013 -113564246 - MTD LTR MaLR -206 213 1 7 882 318 227 153 10 chr5 38974597 38974695 -113562564 - ORR1D2 LTR MaLR -127 243 132 7 882 731 263 71 110 chr5 38975501 38975838 -113561421 - MTE2a LTR MaLR -4 375 52 7 882 342 315 22 0 chr5 38975836 38975925 -113561334 - MTE2a LTR MaLR -284 95 5 7 882 254 324 166 0 chr5 38976016 38976161 -113561098 - MT2A LTR ERVL -7 526 358 7 882 581 282 180 55 chr5 38976206 38976533 -113560726 - MT2A LTR ERVL -162 371 4 7 882 396 310 105 64 chr5 38977541 38977837 -113559422 - ORR1E LTR MaLR -41 318 11 7 882 2249 150 28 6 chr5 38978068 38978111 -113559148 - MTC LTR MaLR -8 413 371 7 882 2270 128 68 8 chr5 38978111 38978480 -113558779 - ORR1B1 LTR MaLR -3 391 1 7 882 2249 150 28 6 chr5 38978480 38978799 -113558460 - MTC LTR MaLR -51 370 44 7 882 475 171 69 3 chr5 38979028 38979129 -113558130 - MTD LTR MaLR -14 405 260 7 882 1026 122 26 67 chr5 38979782 38979975 -113557284 + B2_Mm2 SINE B2 1 185 -10 7 882 689 286 136 18 chr5 38980502 38980840 -113556419 - Lx8 LINE L1 -432 7041 6664 7 882 2552 150 25 82 chr5 38980939 38981491 -113555768 - RLTR28 LTR ERVL -3 521 1 7 882 3291 66 28 5 chr5 38981678 38982107 -113555152 + L1_Mus1 LINE L1 6129 6567 0 7 882 187 238 0 23 chr5 38988324 38988367 -113548892 - L3 LINE CR1 -2361 2128 2087 7 882 1218 232 24 86 chr5 38988699 38988824 -113548435 - RLTR20B3 LTR ERVK 0 577 471 7 882 1215 48 7 0 chr5 38988824 38988969 -113548290 - B1_Mus1 SINE Alu -1 147 2 7 882 1218 241 72 90 chr5 38988969 38989327 -113547932 - RLTR20B3 LTR ERVK -107 470 13 7 882 3306 101 2 37 chr5 38989616 38990108 -113547151 - IAPLTR2_Mm LTR ERVK 0 475 1 7 882 1378 84 21 0 chr5 38990718 38990908 -113546351 + B2_Mm2 SINE B2 2 195 0 7 882 226 289 219 15 chr5 38990916 38991053 -113546206 - RMER5 LTR ERV1 -14 520 356 7 882 615 27 0 0 chr5 38991082 38991155 -113546104 + (TG)n Simple_repeat Simple_repeat 1 73 0 7 882 3797 219 75 42 chr5 38991192 38992315 -113544944 + Lx7 LINE L1 6508 7695 -1 7 882 411 57 28 28 chr5 38992327 38992399 -113544860 + (GGAGA)n Simple_repeat Simple_repeat 2 73 0 7 882 806 281 74 18 chr5 38992408 38992691 -113544568 - RMER5 LTR ERV1 -197 337 39 7 882 483 130 0 0 chr5 38993607 38993684 -113543575 + (TCC)n Simple_repeat Simple_repeat 3 79 0 7 882 360 88 314 50 chr5 38993686 38993804 -113543455 - B2_Mm2 SINE B2 0 195 47 7 882 1160 95 59 0 chr5 38993836 38994005 -113543254 - B2_Mm1t SINE B2 -14 179 1 7 882 380 297 147 65 chr5 38995100 38995543 -113541716 - ERVL-E-int LTR ERVL -2383 3284 2806 7 882 296 293 37 0 chr5 38996287 38996369 -113540890 - MLT2B2 LTR ERVL -55 507 423 7 882 2055 126 29 0 chr5 38996621 38996931 -113540328 + ORR1B1 LTR MaLR 75 393 -1 7 882 981 92 222 0 chr5 38997842 38997995 -113539264 + B2_Mm2 SINE B2 2 188 -7 7 882 249 258 82 10 chr5 38998096 38998194 -113539065 + PB1D10 SINE Alu 1 105 -12 7 882 407 136 15 0 chr5 38998524 38998590 -113538669 + ORR1C1 LTR MaLR 1 67 -311 7 882 296 145 0 98 chr5 38998591 38998652 -113538607 + RMER17A2 LTR ERVK 1 55 -851 7 882 401 64 0 0 chr5 38998652 38998699 -113538560 - MERVK26-int LTR ERVK -4436 2483 2437 7 882 2428 77 3 6 chr5 38998697 38999010 -113538249 - MERVK26-int LTR ERVK -4665 2254 1943 7 882 714 131 10 0 chr5 38999006 38999105 -113538154 + ETnERV2-int LTR ERVK 7070 7169 -237 7 882 1067 195 235 9 chr5 38999108 38999444 -113537815 + RLTR13D6 LTR ERVK 126 537 -365 7 882 534 40 25 62 chr5 38999444 38999524 -113537735 + ETnERV2-int LTR ERVK 7329 7405 -1 7 882 2099 152 17 47 chr5 38999524 38999946 -113537313 + RLTR9E LTR ERVK 1 409 0 7 882 463 37 0 0 chr5 38999946 39000000 -113537259 - MERVK26-int LTR ERVK -4966 1953 1900 7 882 2045 75 83 0 chr5 39000001 39000279 -113536980 - MERVK26-int LTR ERVK -5021 1898 1598 1 882 1546 150 60 23 chr5 39000284 39000585 -113536674 + ORR1C1 LTR MaLR 59 370 -8 2 882 580 131 0 10 chr5 39001017 39001117 -113536142 + ORR1B2 LTR MaLR 269 367 0 3 882 1505 303 87 67 chr5 39001426 39001970 -113535289 + RMER15-int LTR ERVL 152 710 -4289 4 882 1082 88 0 13 chr5 39001970 39002119 -113535140 + B1_Mus1 SINE Alu 1 147 -1 5 882 1505 303 87 67 chr5 39002119 39002537 -113534722 + RMER15-int LTR ERVL 711 1134 -3865 4 882 755 330 58 66 chr5 39002645 39003209 -113534050 + RMER15-int LTR ERVL 1309 1868 -3131 4 882 359 267 98 46 chr5 39003596 39003749 -113533510 + RMER15-int LTR ERVL 2298 2458 -2541 4 882 584 266 32 32 chr5 39003911 39004101 -113533158 + Lx8 LINE L1 6339 6528 -945 6 882 267 195 104 0 chr5 39004323 39004400 -113532859 - MT2B LTR ERVL -366 235 151 7 882 200 176 0 0 chr5 39005309 39005343 -113531916 + CT-rich Low_complexity Low_complexity 5 38 0 8 882 3257 37 37 0 chr5 39008123 39008505 -113528754 - MTA_Mm LTR MaLR 0 396 1 9 882 234 162 0 0 chr5 39008715 39008752 -113528507 - tRNA-Gly-GGY tRNA tRNA -37 37 1 1 882 1167 215 114 24 chr5 39009535 39009869 -113527390 + ORR1D2 LTR MaLR 1 364 -6 1 882 547 158 42 10 chr5 39010577 39010724 -113526535 + MT2B LTR ERVL 1 157 -376 1 882 247 232 0 0 chr5 39011167 39011236 -113526023 - ID4 SINE ID -3 80 12 1 882 331 250 21 90 chr5 39011255 39011400 -113525859 - ID_B1 SINE B4 -3 221 87 1 882 1230 54 0 0 chr5 39012407 39012554 -113524705 - B1_Mus1 SINE Alu 0 148 2 1 882 822 311 131 9 chr5 39013099 39013643 -113523616 + L1M2 LINE L1 4782 5405 -475 1 882 609 272 57 6 chr5 39013643 39013802 -113523457 + ID_B1 SINE B4 1 167 -57 1 882 373 272 0 42 chr5 39013728 39013824 -113523435 + PB1D10 SINE Alu 13 104 -13 1 882 2752 72 5 18 chr5 39013827 39014223 -113523036 - MTA_Mm LTR MaLR 0 396 6 1 882 180 97 0 0 chr5 39014237 39014268 -113522991 + (A)n Simple_repeat Simple_repeat 1 31 0 2 882 1667 37 0 0 chr5 39014319 39014510 -113522749 + B2_Mm1a SINE B2 2 192 -1 2 882 1198 138 27 0 chr5 39014530 39014718 -113522541 + B2_Mm2 SINE B2 2 194 -1 2 882 623 253 26 7 chr5 39014723 39014878 -113522381 + L1_Mur1 LINE L1 5463 5620 -266 2 882 619 138 165 31 chr5 39015428 39015555 -113521704 + B1_Mus1 SINE Alu 5 148 0 2 882 225 146 0 35 chr5 39015560 39015617 -113521642 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2 882 2807 73 1356 28 chr5 39015861 39015919 -113521340 + RMER6C LTR ERVK 111 136 -554 2 882 1985 148 153 16 chr5 39015919 39016297 -113520962 - RLTR23 LTR ERV1 0 430 1 2 882 2807 118 34 87 chr5 39016297 39016882 -113520377 + RMER6C LTR ERVK 137 690 0 2 882 360 0 0 0 chr5 39017136 39017176 -113520083 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 882 1093 250 152 54 chr5 39017558 39018121 -113519138 - Lx8 LINE L1 -1737 5736 5085 2 882 450 0 0 0 chr5 39018379 39018429 -113518830 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 882 589 277 34 0 chr5 39018706 39018883 -113518376 + B3A SINE B2 1 183 -15 3 882 434 154 88 0 chr5 39018908 39018999 -113518260 - PB1D9 SINE Alu 0 120 22 3 882 336 247 66 137 chr5 39019035 39019232 -113518027 + L1MEf LINE L1 1876 2058 -5044 3 882 251 188 84 28 chr5 39019675 39019746 -113517513 - RMER4B LTR ERVK -127 458 384 3 882 4788 175 51 32 chr5 39019760 39020697 -113516562 - RodERV21-int LTR ERV1 -818 4173 3219 3 882 593 220 47 135 chr5 39020786 39021001 -113516258 - MTC-int LTR MaLR -590 668 473 3 882 1043 227 106 8 chr5 39021001 39021115 -113516144 - RodERV21-int LTR ERV1 -4733 258 144 3 882 228 35 0 0 chr5 39021115 39021144 -113516115 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 3 882 1043 227 106 8 chr5 39021144 39021264 -113515995 - RodERV21-int LTR ERV1 -4848 143 2 3 882 256 385 129 29 chr5 39021597 39021838 -113515421 + B4A SINE B4 14 278 -14 3 882 333 234 60 45 chr5 39022153 39022276 -113514983 + L1MEf LINE L1 2276 2403 -4931 3 882 1463 70 38 0 chr5 39022276 39022461 -113514798 + B2_Mm2 SINE B2 1 192 -3 3 882 680 35 11 0 chr5 39022475 39022562 -113514697 + (GAAA)n Simple_repeat Simple_repeat 3 90 0 4 882 623 225 100 61 chr5 39022568 39022748 -113514511 + B3 SINE B2 1 187 -8 4 882 690 216 43 7 chr5 39022938 39023078 -113514181 - B1_Mur2 SINE Alu 0 149 5 4 882 670 160 0 48 chr5 39023453 39023578 -113513681 + B1_Mur2 SINE Alu 31 149 0 4 882 252 0 0 0 chr5 39024085 39024113 -113513146 + (A)n Simple_repeat Simple_repeat 1 28 0 4 882 1194 43 0 0 chr5 39028092 39028232 -113509027 + B1_Mus2 SINE Alu 2 141 -6 4 882 786 22 0 0 chr5 39028234 39028326 -113508933 + (GAA)n Simple_repeat Simple_repeat 2 93 0 4 882 585 272 80 6 chr5 39028328 39028491 -113508768 - B3A SINE B2 -22 176 2 4 882 1445 67 0 44 chr5 39028545 39028748 -113508511 - B2_Mm2 SINE B2 0 195 2 4 882 1308 111 158 0 chr5 39028871 39029105 -113508154 + ORR1A4 LTR MaLR 44 314 -15 4 882 307 381 19 6 chr5 39029166 39029327 -113507932 - Zaphod DNA Tip100 -3801 230 68 5 882 636 251 51 81 chr5 39029775 39030009 -113507250 + RMER15 LTR ERVL 336 562 -13 5 882 5354 36 0 3 chr5 39030055 39030687 -113506572 - L1Md_F2 LINE L1 0 6582 5953 5 882 598 233 19 76 chr5 39030717 39031055 -113506204 - RMER5 LTR ERV1 -67 467 58 5 882 210 37 0 0 chr5 39031055 39031082 -113506177 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 882 1125 63 0 34 chr5 39031085 39031232 -113506027 - B1_Mus1 SINE Alu -6 142 1 5 882 591 366 72 26 chr5 39031354 39031627 -113505632 + RMER15-int LTR ERVL 200 490 -4509 5 882 1479 69 5 0 chr5 39031627 39031816 -113505443 + B2_Mm1a SINE B2 2 191 -2 5 882 591 366 72 26 chr5 39031816 39031848 -113505411 + RMER15-int LTR ERVL 491 518 -4481 5 882 2898 160 104 26 chr5 39031848 39032387 -113504872 + RMER4B LTR ERVK 5 585 0 5 882 7995 145 43 44 chr5 39032413 39033853 -113503406 + MurERV4-int LTR ERVK 38 1475 -3785 5 882 849 285 16 77 chr5 39033860 39034301 -113502958 + BGLII_B LTR ERVK 1 414 -27 5 882 7061 138 52 4 chr5 39034331 39035454 -113501805 + MurERV4-int LTR ERVK 1482 2658 -2602 5 882 1951 190 60 36 chr5 39035465 39036119 -113501140 - RMER6A LTR ERVK -11 679 1 6 882 11665 138 26 14 chr5 39036119 39036144 -113501115 + MurERV4-int LTR ERVK 2653 2676 -2584 5 882 1434 61 28 0 chr5 39036144 39036325 -113500934 + B2_Mm1t SINE B2 1 186 -7 6 882 11665 138 26 14 chr5 39036325 39037379 -113499880 + MurERV4-int LTR ERVK 2677 3749 -1511 5 882 1183 61 0 13 chr5 39037379 39037528 -113499731 + B1_Mm SINE Alu 1 147 0 6 882 11665 138 26 14 chr5 39037528 39038341 -113498918 + MurERV4-int LTR ERVK 3750 4569 -691 5 882 3137 160 169 79 chr5 39038341 39039168 -113498091 - RMER19B LTR ERVK 0 902 1 6 882 3791 139 5 2 chr5 39039168 39039745 -113497514 + MurERV4-int LTR ERVK 4564 5142 -118 5 882 1013 248 70 29 chr5 39040240 39040552 -113496707 + RMER15-int LTR ERVL 4148 4472 -527 5 882 1038 244 129 35 chr5 39040555 39040895 -113496364 + MTEa LTR MaLR 8 379 0 6 882 914 251 83 73 chr5 39040895 39041196 -113496063 + RMER15-int LTR ERVL 4463 4766 -233 5 882 359 231 106 53 chr5 39041441 39041592 -113495667 + RLTR14 LTR ERV1 224 382 0 6 882 328 338 55 7 chr5 39041709 39041855 -113495404 + Lx8 LINE L1 6923 7075 -398 6 882 1542 224 72 32 chr5 39042270 39042744 -113494515 + RMER5 LTR ERV1 33 525 -9 6 882 190 228 85 34 chr5 39043955 39044014 -113493245 + L2a LINE L2 3108 3169 -257 6 882 977 168 68 231 chr5 39044206 39044664 -113492595 - ORR1C2 LTR MaLR -1 383 1 6 882 282 323 45 23 chr5 39045042 39045175 -113492084 + Arthur1B DNA Tip100 60 195 -1030 7 882 334 200 130 28 chr5 39045424 39045532 -113491727 + Arthur1B DNA Tip100 475 593 -632 7 882 602 284 89 121 chr5 39045849 39046129 -113491130 - B4A SINE B4 -20 272 2 7 882 309 68 0 0 chr5 39046302 39046346 -113490913 + (CAA)n Simple_repeat Simple_repeat 2 45 0 7 882 482 279 30 15 chr5 39046375 39046506 -113490753 + RSINE1 SINE B4 21 153 -12 7 882 1628 184 9 25 chr5 39046559 39046883 -113490376 - RMER20B LTR ERVK -308 319 1 7 882 566 245 127 16 chr5 39046883 39047165 -113490094 + ORR1E LTR MaLR 6 362 -8 7 882 735 116 0 0 chr5 39047824 39047936 -113489323 + (TTTCC)n Simple_repeat Simple_repeat 3 114 0 7 882 406 353 40 17 chr5 39047977 39048153 -113489106 + polypyrimidine Low_complexity Low_complexity 1 180 0 7 882 708 198 0 28 chr5 39048170 39048352 -113488907 + T-rich Low_complexity Low_complexity 4 180 0 7 882 426 85 0 0 chr5 39048354 39048413 -113488846 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 882 413 95 20 0 chr5 39048414 39048487 -113488772 - B2_Mm2 SINE B2 -73 125 47 8 882 874 140 0 0 chr5 39048541 39048677 -113488582 - B2_Mm2 SINE B2 -58 137 2 8 882 28 29 0 0 chr5 39048686 39048721 -113488538 + AT_rich Low_complexity Low_complexity 1 35 0 8 882 695 138 55 31 chr5 39048733 39048860 -113488399 - B3 SINE B2 -86 130 1 8 882 2390 107 3 0 chr5 39049336 39049662 -113487597 + ORR1A2 LTR MaLR 1 327 0 8 882 552 196 84 28 chr5 39050189 39050331 -113486928 - B1_Mur4 SINE Alu 0 150 1 8 882 699 139 0 9 chr5 39051074 39051188 -113486071 + RLTR33 LTR ERVK 175 287 -391 8 882 1782 177 11 20 chr5 39051188 39051545 -113485714 - ORR1B1 LTR MaLR 0 394 41 8 882 1011 216 143 7 chr5 39051552 39051845 -113485414 + RLTR33 LTR ERVK 283 615 -63 8 882 341 306 18 0 chr5 39052192 39052303 -113484956 + MLT1A0 LTR MaLR 146 258 -107 8 882 2902 47 8 19 chr5 39052655 39053025 -113484234 - L1Md_F2 LINE L1 0 6582 6217 8 882 764 177 0 30 chr5 39053509 39053643 -113483616 - B1_Mur2 SINE Alu -2 147 18 9 882 976 89 0 0 chr5 39053641 39053776 -113483483 + B1_Mm SINE Alu 13 147 0 9 882 387 0 0 0 chr5 39053790 39053833 -113483426 + (CCAA)n Simple_repeat Simple_repeat 2 44 0 9 882 1390 288 96 63 chr5 39053836 39054196 -113483063 + L1M3 LINE L1 3168 3554 -2586 9 882 837 175 42 7 chr5 39054196 39054340 -113482919 + B1_Mur3 SINE Alu 1 149 0 9 882 1453 69 11 0 chr5 39054344 39054533 -113482726 + B2_Mm1a SINE B2 1 191 -2 9 882 1390 288 96 63 chr5 39054533 39054569 -113482690 + L1M3 LINE L1 3555 3583 -2557 9 882 182 37 37 0 chr5 39054569 39054596 -113482663 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 9 882 1390 288 96 63 chr5 39054596 39055306 -113481953 + L1M3 LINE L1 3584 4317 -1823 9 882 975 101 49 25 chr5 39055313 39055475 -113481784 + B2_Mm1t SINE B2 2 167 -26 9 882 241 211 0 26 chr5 39055481 39055559 -113481700 + (TTA)n Simple_repeat Simple_repeat 1 76 0 9 882 433 80 310 35 chr5 39055640 39055756 -113481503 + B2_Mm2 SINE B2 47 194 -1 9 882 732 284 219 20 chr5 39055826 39056592 -113480667 + L1M3 LINE L1 4324 5280 -863 9 882 234 0 0 0 chr5 39056592 39056618 -113480641 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 882 730 279 214 41 chr5 39056618 39057131 -113480128 + L1M3 LINE L1 5250 5856 -24 9 883 24 32 0 0 chr5 39060203 39060234 -113477025 + AT_rich Low_complexity Low_complexity 1 31 0 1 883 225 0 0 0 chr5 39066908 39066933 -113470326 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 883 669 332 53 82 chr5 39069229 39069570 -113467689 - MER47B DNA MER2_type -5 413 83 1 883 1292 14 7 0 chr5 39069857 39070003 -113467256 - B1_Mus1 SINE Alu 0 148 2 1 883 320 269 51 25 chr5 39070589 39070707 -113466552 - L1MD LINE L1 -2945 3201 3081 1 883 1274 41 0 0 chr5 39070711 39070858 -113466401 - B1_Mm SINE Alu 0 147 1 1 883 264 244 84 12 chr5 39072325 39072408 -113464851 + MIRc SINE MIR 66 154 -114 1 883 258 321 67 81 chr5 39073088 39073237 -113464022 - MER5B DNA MER1_type -28 150 4 1 883 2013 104 32 19 chr5 39077234 39077272 -113459987 - ORR1A2 LTR MaLR -8 319 286 1 883 987 73 71 28 chr5 39077272 39077413 -113459846 - B1_Mus1 SINE Alu 0 148 2 1 883 2013 104 32 19 chr5 39077413 39077689 -113459570 - ORR1A2 LTR MaLR -42 285 1 1 883 191 329 118 75 chr5 39077833 39077994 -113459265 - L3 LINE CR1 -115 4374 4207 1 883 993 108 279 17 chr5 39078158 39078337 -113458922 + URR1A DNA MER1_type 1 226 0 1 883 601 276 129 87 chr5 39078658 39079007 -113458252 + MLT1C LTR MaLR 6 376 -91 1 883 717 188 43 14 chr5 39079007 39079147 -113458112 - B1F2 SINE Alu -1 148 5 1 883 601 286 109 81 chr5 39079147 39079245 -113458014 + MLT1C LTR MaLR 377 496 -9 1 883 21 0 0 0 chr5 39079921 39079942 -113457317 + AT_rich Low_complexity Low_complexity 1 21 0 1 883 213 235 78 0 chr5 39080103 39080154 -113457105 + MIRc SINE MIR 67 121 -147 1 883 210 304 108 31 chr5 39080518 39080647 -113456612 + L4 LINE RTE 1079 1217 -812 1 883 2250 144 70 38 chr5 39081475 39081559 -113455700 - MTC LTR MaLR -10 411 328 1 883 510 17 0 0 chr5 39081559 39081618 -113455641 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 1 883 1183 64 0 0 chr5 39081618 39081759 -113455500 - B1_Mus1 SINE Alu -6 142 2 1 883 2250 144 70 38 chr5 39081759 39082071 -113455188 - MTC LTR MaLR -94 327 2 1 883 1538 248 16 54 chr5 39082699 39083122 -113454137 + Lx6 LINE L1 7054 7460 0 1 883 569 349 75 70 chr5 39083364 39083805 -113453454 + MLT1J LTR MaLR 9 451 -61 1 883 278 219 31 15 chr5 39083808 39083873 -113453386 + MER45A DNA Tip100 111 176 -2 1 883 1229 48 0 0 chr5 39084521 39084668 -113452591 - B1_Mus2 SINE Alu 0 147 1 1 883 493 294 80 6 chr5 39084747 39084981 -113452278 + MTEa LTR MaLR 131 379 0 1 883 22 0 0 0 chr5 39085076 39085098 -113452161 + AT_rich Low_complexity Low_complexity 1 22 0 1 883 2045 122 38 96 chr5 39085427 39085811 -113451448 - ORR1B1 LTR MaLR 0 394 36 1 883 1062 107 0 0 chr5 39085811 39085970 -113451289 + (TG)n Simple_repeat Simple_repeat 1 159 0 1 883 2045 122 38 96 chr5 39085970 39085982 -113451277 - ORR1B1 LTR MaLR -359 35 21 1 883 22 0 0 0 chr5 39086286 39086308 -113450951 + AT_rich Low_complexity Low_complexity 1 22 0 1 883 436 229 15 103 chr5 39086487 39086530 -113450729 + MT2B LTR ERVL 134 164 -437 1 883 745 212 61 0 chr5 39086530 39086662 -113450597 + B1_Mur2 SINE Alu 4 143 -6 1 883 354 303 89 24 chr5 39087226 39087395 -113449864 + L2c LINE L2 2793 2972 -447 1 883 274 274 136 36 chr5 39087383 39087523 -113449736 - L2a LINE L2 -1 3425 3272 1 883 254 73 0 24 chr5 39087707 39087749 -113449510 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 883 194 329 0 0 chr5 39087913 39087986 -113449273 + L2c LINE L2 3050 3122 -265 1 883 1047 232 133 80 chr5 39088129 39088624 -113448635 + MT2A LTR ERVL 1 577 -24 1 883 1039 187 55 23 chr5 39088624 39088843 -113448416 + URR1A DNA MER1_type 1 226 0 1 883 830 292 41 64 chr5 39088843 39088867 -113448392 + MT2A LTR ERVL 578 601 0 1 883 328 266 176 21 chr5 39088940 39089316 -113447943 - L1M2 LINE L1 -2818 3322 2889 1 883 276 323 26 8 chr5 39089314 39089523 -113447736 + L1MA4A LINE L1 5719 5904 -396 1 883 389 311 122 9 chr5 39089738 39089959 -113447300 - L1M2 LINE L1 -3261 2882 2637 1 883 366 279 126 54 chr5 39090525 39090786 -113446473 - L1MC LINE L1 -2870 3276 2997 1 883 234 0 0 0 chr5 39090787 39090813 -113446446 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 1 883 317 328 100 15 chr5 39090813 39090943 -113446316 - HAL1-3A_ME LINE L1 -421 2437 2297 1 883 573 211 0 0 chr5 39090947 39091051 -113446208 - U6 snRNA snRNA -3 104 1 1 883 298 322 75 36 chr5 39091135 39091441 -113445818 - L1MC LINE L1 -3243 2903 2586 1 883 234 150 0 0 chr5 39091665 39091705 -113445554 + (TTC)n Simple_repeat Simple_repeat 2 41 0 1 883 1234 42 0 0 chr5 39092024 39092167 -113445092 - B1_Mus2 SINE Alu 0 147 5 1 883 1469 74 5 0 chr5 39092167 39092356 -113444903 - B2_Mm1a SINE B2 -2 191 2 1 883 1381 136 9 35 chr5 39092678 39092906 -113444353 + URR1A DNA MER1_type 3 224 -2 1 883 357 252 42 0 chr5 39093075 39093182 -113444077 - L1M5 LINE L1 -977 5169 5059 1 883 493 327 33 60 chr5 39093651 39093953 -113443306 - L1MA10 LINE L1 -12 6322 6029 1 883 310 325 57 27 chr5 39093993 39094355 -113442904 - L1MA10 LINE L1 -318 5850 5475 1 883 257 325 108 60 chr5 39095712 39095879 -113441380 + LTR16B1 LTR ERVL 146 320 -160 1 883 398 62 0 30 chr5 39096123 39096190 -113441069 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 1 883 727 269 7 0 chr5 39096196 39096341 -113440918 - ID_B1 SINE B4 -15 209 64 1 883 1046 96 0 20 chr5 39096352 39096501 -113440758 - B1_Mus2 SINE Alu 0 147 2 1 883 302 156 16 0 chr5 39096795 39096859 -113440400 + CT-rich Low_complexity Low_complexity 4 68 0 1 883 263 295 63 13 chr5 39098159 39098238 -113439021 - B1_Mur1 SINE Alu -9 140 58 1 883 381 311 70 41 chr5 39098521 39098692 -113438567 + MIR SINE MIR 49 224 -38 1 883 228 213 0 0 chr5 39099332 39099393 -113437866 + GA-rich Low_complexity Low_complexity 2 62 0 1 883 270 0 0 0 chr5 39099864 39099894 -113437365 + (T)n Simple_repeat Simple_repeat 1 30 0 1 883 201 184 0 0 chr5 39100484 39100523 -113436736 + MIR SINE MIR 220 262 -6 1 883 484 160 10 10 chr5 39101131 39101232 -113436027 + G-rich Low_complexity Low_complexity 3 103 0 1 883 863 259 194 29 chr5 39101732 39102042 -113435217 - MTE2b LTR MaLR -15 364 4 1 883 625 241 62 94 chr5 39102263 39102487 -113434772 - MLT1B LTR MaLR 0 390 174 1 883 909 218 28 11 chr5 39102849 39103062 -113434197 + B3A SINE B2 1 206 -10 1 883 835 202 84 25 chr5 39103397 39103600 -113433659 + B3 SINE B2 2 216 0 1 883 263 236 116 80 chr5 39104783 39104921 -113432338 + ORR1E LTR MaLR 96 238 -121 1 883 257 347 107 13 chr5 39105107 39105256 -113432003 + MLT1I LTR MaLR 1 163 -248 1 883 252 250 0 0 chr5 39105355 39105411 -113431848 + MLT1I LTR MaLR 347 402 -9 1 883 1076 116 105 0 chr5 39105648 39105820 -113431439 - B2_Mm2 SINE B2 -4 191 2 1 883 469 172 172 0 chr5 39106593 39106692 -113430567 - ID_B1 SINE B4 -4 220 105 1 883 872 53 26 0 chr5 39108269 39108382 -113428877 - B1_Mm SINE Alu -2 145 30 1 883 860 88 29 0 chr5 39108447 39108584 -113428675 + Lx2 LINE L1 6857 6997 0 1 883 337 311 83 54 chr5 39108619 39108932 -113428327 + L1ME2 LINE L1 5836 6157 -7 1 883 1111 147 132 0 chr5 39109296 39109493 -113427766 - URR1A DNA MER1_type -3 223 1 1 883 820 293 35 47 chr5 39109775 39110119 -113427140 - L1MB3 LINE L1 -15 6168 5829 1 883 318 50 0 0 chr5 39110119 39110159 -113427100 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 883 540 276 130 21 chr5 39110159 39110342 -113426917 - L1MB3 LINE L1 -346 5828 5597 1 883 402 21 0 0 chr5 39110342 39110389 -113426870 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1 883 333 0 0 0 chr5 39110589 39110626 -113426633 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 1 883 1143 114 0 0 chr5 39110627 39110785 -113426474 - B2_Mm2 SINE B2 -37 158 1 1 883 2636 128 5 27 chr5 39111632 39112035 -113425224 + ORR1B1 LTR MaLR 1 394 0 1 883 462 214 32 97 chr5 39112489 39112644 -113424615 + B4 SINE B4 7 151 -141 1 883 25051 161 55 27 chr5 39112721 39114805 -113422454 + Lx4B LINE L1 738 2872 -3005 1 883 2855 158 41 16 chr5 39114805 39115320 -113421939 + RLTR11A LTR ERVK 1 528 0 1 883 25051 146 47 24 chr5 39115320 39115988 -113421271 + Lx4B LINE L1 2873 3520 -2357 1 883 570 15 0 0 chr5 39115988 39116055 -113421204 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 1 883 25051 146 47 24 chr5 39116055 39116075 -113421184 + Lx4B LINE L1 3521 3521 -2356 1 883 1601 32 0 16 chr5 39116075 39116265 -113420994 - B2_Mm1a SINE B2 -5 188 2 1 883 25051 146 47 24 chr5 39116265 39117923 -113419336 + Lx4B LINE L1 3521 5299 -578 1 883 4315 106 13 3 chr5 39117923 39118518 -113418741 + MT2B LTR ERVL 1 601 0 1 883 25051 145 108 11 chr5 39118518 39120126 -113417133 + Lx4B LINE L1 5300 7058 0 1 883 36 70 0 0 chr5 39120976 39121047 -113416212 + AT_rich Low_complexity Low_complexity 1 71 0 1 883 1188 88 64 6 chr5 39121203 39121374 -113415885 + B2_Mm2 SINE B2 2 182 -13 1 883 222 61 0 29 chr5 39121422 39121456 -113415803 + B2_Mm2 SINE B2 49 81 -114 1 883 189 0 0 0 chr5 39121471 39121492 -113415767 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1 883 377 264 11 0 chr5 39122768 39122855 -113414404 + ID_B1 SINE B4 137 224 0 1 883 489 127 0 0 chr5 39122857 39122936 -113414323 + (GGA)n Simple_repeat Simple_repeat 3 81 0 1 883 1505 48 37 16 chr5 39122969 39123160 -113414099 - B2_Mm2 SINE B2 0 195 1 1 883 22 0 0 0 chr5 39127672 39127694 -113409565 + AT_rich Low_complexity Low_complexity 1 22 0 1 883 201 189 59 59 chr5 39128011 39128180 -113409079 + (CAAG)n Simple_repeat Simple_repeat 2 170 0 1 883 794 273 123 47 chr5 39128555 39128920 -113408339 + MTD LTR MaLR 11 403 -16 1 883 1792 158 68 58 chr5 39129551 39129948 -113407311 + MTD LTR MaLR 10 410 -9 1 883 321 26 0 0 chr5 39130145 39130183 -113407076 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 883 255 31 0 0 chr5 39130532 39130564 -113406695 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 883 477 284 84 62 chr5 39131031 39131305 -113405954 + B4A SINE B4 5 284 -8 1 883 427 234 0 14 chr5 39131313 39131460 -113405799 + (CA)n Simple_repeat Simple_repeat 1 145 0 1 883 270 0 0 0 chr5 39131910 39131940 -113405319 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 883 253 261 25 90 chr5 39131944 39132066 -113405193 - PB1D7 SINE Alu -6 114 1 1 883 220 111 44 0 chr5 39133612 39133657 -113403602 + A-rich Low_complexity Low_complexity 2 48 0 2 883 339 130 0 0 chr5 39134192 39134246 -113403013 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 883 1080 96 11 22 chr5 39134246 39134428 -113402831 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2 883 1164 137 0 0 chr5 39134428 39134838 -113402421 + (CA)n Simple_repeat Simple_repeat 1 410 0 2 883 840 195 162 13 chr5 39134839 39135073 -113402186 - B4A SINE B4 -9 283 15 2 883 340 244 70 27 chr5 39135700 39135820 -113401439 + L1M4 LINE L1 5645 5766 -567 2 883 267 300 32 11 chr5 39135864 39135974 -113401285 + B1F2 SINE Alu 1 112 -5 2 883 2635 37 9 6 chr5 39135987 39136314 -113400945 - L1Md_F3 LINE L1 0 6584 6257 2 883 641 217 12 106 chr5 39136603 39136773 -113400486 + B3A SINE B2 1 154 -44 2 883 525 32 0 0 chr5 39136786 39136849 -113400410 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 883 890 171 14 0 chr5 39136917 39137063 -113400196 + B1_Mur3 SINE Alu 2 149 0 2 883 226 93 71 36 chr5 39137065 39137121 -113400138 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 2 883 327 254 50 42 chr5 39138098 39138217 -113399042 - L1MD1 LINE L1 -14 6228 6109 2 883 611 264 68 78 chr5 39140114 39140319 -113396940 - B3 SINE B2 -13 203 1 2 883 1467 179 48 14 chr5 39140475 39140796 -113396463 + Lx9 LINE L1 6097 6557 -1087 2 883 4617 86 33 47 chr5 39140797 39141556 -113395703 + RLTR22_Mur LTR ERVK 1053 1800 -48 2 883 654 264 6 6 chr5 39142465 39142621 -113394638 + RSINE1 SINE B4 3 158 -7 2 883 779 194 183 0 chr5 39142865 39143040 -113394219 - B3 SINE B2 -9 207 1 2 883 1314 73 0 0 chr5 39143160 39143339 -113393920 + (TCCCC)n Simple_repeat Simple_repeat 1 179 0 2 883 750 173 6 12 chr5 39143339 39143494 -113393765 + CT-rich Low_complexity Low_complexity 3 157 0 2 883 430 252 60 15 chr5 39143507 39143640 -113393619 + CT-rich Low_complexity Low_complexity 1 139 0 2 883 391 217 19 0 chr5 39143654 39143760 -113393499 + CT-rich Low_complexity Low_complexity 1 108 0 2 883 400 154 10 81 chr5 39143760 39143859 -113393400 - BC1_Mm scRNA scRNA -60 92 1 2 883 2555 148 86 12 chr5 39144097 39144584 -113392675 + RLTR28 LTR ERVL 2 524 0 2 883 796 294 82 12 chr5 39144826 39145240 -113392019 - L1MA9 LINE L1 -295 6017 5575 2 883 1005 219 5 14 chr5 39145958 39146171 -113391088 + Lx6 LINE L1 7073 7283 -177 2 883 258 276 26 0 chr5 39146695 39146771 -113390488 + MER63D DNA AcHobo 34 111 -950 2 883 254 221 39 13 chr5 39146811 39146889 -113390370 + MER63D DNA AcHobo 361 440 -621 2 883 445 217 155 0 chr5 39147097 39147226 -113390033 + B1F SINE Alu 1 149 0 2 883 180 351 21 31 chr5 39147399 39147496 -113389763 + MIRc SINE MIR 47 142 -126 2 883 1062 0 0 0 chr5 39149777 39149895 -113387364 + (CAAAG)n Simple_repeat Simple_repeat 2 119 0 2 883 805 250 67 9 chr5 39150413 39150623 -113386636 - ORR1D2 LTR MaLR 0 370 149 2 883 741 175 18 0 chr5 39150623 39150789 -113386470 + GA-rich Low_complexity Low_complexity 4 172 0 2 883 980 69 46 8 chr5 39150867 39150998 -113386261 + B1_Mus2 SINE Alu 1 136 -11 2 883 189 0 0 0 chr5 39151000 39151021 -113386238 + (G)n Simple_repeat Simple_repeat 1 21 0 2 883 1898 189 19 9 chr5 39151363 39152009 -113385250 + L1_Mur3 LINE L1 882 1598 -4279 2 883 2038 86 43 0 chr5 39152010 39152288 -113384971 + L1VL2 LINE L1 534 823 -5512 2 883 4814 78 14 3 chr5 39152284 39153204 -113384055 - Lx3_Mus LINE L1 -804 6205 5267 2 883 2287 60 3 0 chr5 39153202 39153486 -113383773 + Lx3_Mus LINE L1 6190 6474 -535 2 883 534 121 0 39 chr5 39153486 39153589 -113383670 + Lx3_Mus LINE L1 6555 6653 -1 2 883 384 22 0 0 chr5 39156187 39156232 -113381027 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 883 324 161 27 34 chr5 39156868 39157016 -113380243 + (TG)n Simple_repeat Simple_repeat 2 148 0 2 883 238 167 0 32 chr5 39157020 39157082 -113380177 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 883 265 195 60 34 chr5 39157104 39157221 -113380038 + (TG)n Simple_repeat Simple_repeat 2 121 0 2 883 338 242 77 0 chr5 39157236 39157327 -113379932 - MER20 DNA MER1_type -121 98 1 2 883 32 26 0 0 chr5 39158528 39158567 -113378692 + AT_rich Low_complexity Low_complexity 1 39 0 2 883 770 126 0 59 chr5 39158567 39158702 -113378557 - B1_Mur4 SINE Alu 0 150 24 2 883 423 0 0 0 chr5 39158722 39158769 -113378490 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 883 214 282 56 0 chr5 39159036 39159107 -113378152 + MIRb SINE MIR 180 254 -14 2 883 576 0 0 0 chr5 39159877 39159941 -113377318 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 2 883 591 177 19 23 chr5 39159943 39160071 -113377188 - B1F SINE Alu -4 145 21 2 883 314 311 9 19 chr5 39160258 39160363 -113376896 - PB1D10 SINE Alu -2 115 12 2 883 258 296 185 7 chr5 39161374 39161520 -113375739 + MLT1E3 LTR MaLR 1 172 -452 2 883 304 289 31 8 chr5 39161896 39162025 -113375234 + L1M4 LINE L1 4519 4650 -1496 2 883 249 243 53 0 chr5 39162075 39162161 -113375098 + MLT1E3 LTR MaLR 233 400 -67 2 883 366 73 18 0 chr5 39162829 39162884 -113374375 + Lx2 LINE L1 6588 6643 -354 2 883 1475 117 0 0 chr5 39162884 39163107 -113374152 + Lx2 LINE L1 6775 6997 0 2 883 348 24 0 0 chr5 39164934 39164975 -113372284 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 883 204 216 0 0 chr5 39165011 39165062 -113372197 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 883 21 82 0 0 chr5 39165156 39165205 -113372054 + AT_rich Low_complexity Low_complexity 1 49 0 2 883 376 153 0 65 chr5 39166116 39166193 -113371066 + ID_B1 SINE B4 84 155 -69 2 883 366 238 100 45 chr5 39166193 39166225 -113371034 + PB1D10 SINE Alu 3 117 0 2 883 346 300 15 23 chr5 39166314 39166447 -113370812 + B4 SINE B4 2 133 -159 2 883 508 312 12 77 chr5 39166490 39166660 -113370599 + B4 SINE B4 133 291 -1 2 883 1233 117 0 22 chr5 39167795 39167979 -113369280 + B2_Mm2 SINE B2 15 194 -1 2 883 1346 220 105 17 chr5 39168106 39168467 -113368792 - MTD LTR MaLR -14 405 13 2 883 195 42 0 0 chr5 39168470 39168494 -113368765 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2 883 844 305 71 29 chr5 39168551 39168902 -113368357 + MER31A LTR ERV1 41 406 -79 2 883 353 123 0 15 chr5 39169968 39170034 -113367225 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 883 226 288 0 59 chr5 39170226 39170311 -113366948 + MTEb LTR MaLR 282 361 -18 2 883 354 350 122 72 chr5 39171404 39171749 -113365510 + MLT1J LTR MaLR 129 490 -22 2 883 744 12 0 0 chr5 39172444 39172529 -113364730 + (GA)n Simple_repeat Simple_repeat 1 85 0 2 883 321 131 0 0 chr5 39173890 39173951 -113363308 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 2 883 291 54 0 0 chr5 39174022 39174059 -113363200 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 883 269 312 73 0 chr5 39175080 39175176 -113362083 - MIRb SINE MIR -117 151 49 2 883 492 18 0 0 chr5 39175583 39175640 -113361619 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 883 683 252 80 36 chr5 39175980 39176190 -113361069 - B4 SINE B4 -4 288 69 2 883 408 20 0 0 chr5 39176190 39176239 -113361020 + (TATG)n Simple_repeat Simple_repeat 4 52 0 2 883 683 252 80 36 chr5 39176239 39176304 -113360955 - B4 SINE B4 -224 68 1 2 883 333 0 0 0 chr5 39176537 39176574 -113360685 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 883 331 310 51 51 chr5 39176577 39176826 -113360433 - B4 SINE B4 -16 276 40 2 883 415 151 44 55 chr5 39178607 39178698 -113358561 - PB1D10 SINE Alu -5 112 23 2 883 300 250 275 9 chr5 39178698 39178715 -113358544 - ID_B1 SINE B4 -4 219 83 2 883 282 251 129 59 chr5 39178809 39178995 -113358264 + L1MB1 LINE L1 5958 6156 -12 2 883 27 29 0 0 chr5 39180048 39180082 -113357177 + AT_rich Low_complexity Low_complexity 1 34 0 2 883 372 316 81 17 chr5 39183086 39183260 -113353999 - MER5A DNA MER1_type -4 185 1 2 883 649 312 32 28 chr5 39183389 39183636 -113353623 - MER2 DNA MER2_type -7 338 91 2 883 201 306 73 24 chr5 39183721 39183845 -113353414 + MIRb SINE MIR 35 164 -104 2 883 415 252 11 0 chr5 39185795 39186085 -113351174 + (TG)n Simple_repeat Simple_repeat 1 293 0 2 883 531 0 0 0 chr5 39187234 39187293 -113349966 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 883 297 0 0 0 chr5 39187363 39187396 -113349863 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 883 237 139 70 0 chr5 39187414 39187457 -113349802 - RSINE1 SINE B4 -38 127 82 2 883 677 274 69 10 chr5 39187591 39187794 -113349465 - B4A SINE B4 -77 215 1 2 883 384 22 0 0 chr5 39188499 39188544 -113348715 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 2 883 986 67 0 7 chr5 39189184 39189320 -113347939 + (GGGAGA)n Simple_repeat Simple_repeat 1 135 0 2 883 4176 54 15 2 chr5 39189437 39189955 -113347304 - L1_Mus1 LINE L1 0 6567 6043 2 883 180 0 0 0 chr5 39190066 39190086 -113347173 + (CCA)n Simple_repeat Simple_repeat 3 22 0 2 884 469 156 104 0 chr5 39190714 39190810 -113346449 + MTD LTR MaLR 3 108 -276 2 884 1393 168 120 0 chr5 39190830 39191104 -113346155 + Lx LINE L1 6340 6646 -8 2 884 493 194 238 16 chr5 39191104 39191230 -113346029 + MTD LTR MaLR 196 349 -70 2 884 654 209 19 45 chr5 39191208 39191363 -113345896 + ORR1B2 LTR MaLR 27 177 -190 2 884 249 33 0 0 chr5 39191364 39191394 -113345865 + (CCTG)n Simple_repeat Simple_repeat 2 31 0 2 884 751 292 200 3 chr5 39191395 39191447 -113345812 + MT2A LTR ERVL 186 237 -296 2 884 1408 79 10 16 chr5 39191447 39191640 -113345619 - B2_Mm1t SINE B2 0 193 2 2 884 751 292 200 3 chr5 39191640 39191872 -113345387 + MT2A LTR ERVL 238 525 -8 2 884 365 310 48 101 chr5 39192078 39192353 -113344906 + ORR1E LTR MaLR 1 296 -83 2 884 380 198 140 21 chr5 39193854 39193947 -113343312 - B1_Mur2 SINE Alu 0 149 46 2 884 1236 42 0 0 chr5 39194329 39194472 -113342787 + B1_Mus1 SINE Alu 1 143 -5 2 884 242 350 65 32 chr5 39194484 39194608 -113342651 - MLT1F1 LTR MaLR -128 441 314 2 884 1188 342 98 60 chr5 39194668 39195321 -113341938 + MER21B LTR ERV1 149 826 -37 2 884 4141 11 0 0 chr5 39195326 39195781 -113341478 - L1Md_T LINE L1 -296 6286 5832 2 884 691 187 48 41 chr5 39196865 39197010 -113340249 + B1_Mur2 SINE Alu 2 147 -2 3 884 306 0 0 0 chr5 39198401 39198435 -113338824 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 884 203 185 34 23 chr5 39200058 39200117 -113337142 - MIR SINE MIR -101 175 106 3 884 196 172 207 0 chr5 39200423 39200481 -113336778 + MIRb SINE MIR 187 256 -12 3 884 479 291 111 75 chr5 39200863 39201213 -113336046 + MLT1A0 LTR MaLR 4 408 0 3 884 1363 56 73 0 chr5 39201686 39201845 -113335414 + B2_Mm1t SINE B2 2 160 -33 3 884 405 0 0 0 chr5 39201845 39201890 -113335369 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 3 884 1363 56 73 0 chr5 39201890 39201908 -113335351 + B2_Mm1t SINE B2 161 191 -2 3 884 1305 306 128 64 chr5 39202089 39202963 -113334296 + MER63C DNA AcHobo 1 930 0 3 884 180 0 0 0 chr5 39203978 39203998 -113333261 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 884 434 306 97 70 chr5 39203999 39204399 -113332860 + L1ME1 LINE L1 5587 5993 -186 3 884 243 0 0 0 chr5 39204399 39204426 -113332833 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 884 434 303 136 76 chr5 39204426 39204570 -113332689 + L1ME1 LINE L1 5994 6162 -16 3 884 194 312 51 13 chr5 39205319 39205397 -113331862 - MIRc SINE MIR -103 165 85 3 884 188 371 31 31 chr5 39208521 39208649 -113328610 - MIRb SINE MIR -119 149 22 3 884 262 280 19 9 chr5 39208845 39208953 -113328306 + (TTCA)n Simple_repeat Simple_repeat 4 112 0 3 884 1716 184 49 57 chr5 39209831 39210218 -113327041 - ORR1C2 LTR MaLR 0 384 1 3 884 236 289 100 0 chr5 39210687 39210777 -113326482 + L2 LINE L2 2410 2508 -911 3 884 564 133 0 0 chr5 39211007 39211127 -113326132 + (GA)n Simple_repeat Simple_repeat 1 120 0 3 884 542 261 51 80 chr5 39212354 39212529 -113324730 + MTE2a LTR MaLR 1 170 -209 3 884 762 32 0 0 chr5 39212576 39212669 -113324590 + (GA)n Simple_repeat Simple_repeat 1 93 0 3 884 485 296 122 10 chr5 39212835 39213040 -113324219 + MLT1C LTR MaLR 1 228 -239 3 884 1596 193 102 9 chr5 39213042 39213376 -113323883 + ORR1D1 LTR MaLR 10 374 0 3 884 335 235 18 105 chr5 39213421 39213485 -113323774 + MLT1C LTR MaLR 287 349 -41 3 884 2556 169 69 40 chr5 39213485 39214033 -113323226 + RLTR12A LTR ERVK 1 564 -4 3 884 335 235 18 105 chr5 39214033 39214082 -113323177 + MLT1C LTR MaLR 350 390 0 3 884 1855 93 4 37 chr5 39214972 39215241 -113322018 + ORR1A2 LTR MaLR 1 260 -67 3 884 229 224 36 84 chr5 39215433 39215516 -113321743 - MER73 LTR ERVL -27 617 539 3 884 517 221 128 76 chr5 39216316 39216527 -113320732 - MLT1B LTR MaLR -168 222 1 3 884 744 284 43 0 chr5 39216571 39216782 -113320477 - ID_B1 SINE B4 -2 222 3 3 884 1390 269 141 30 chr5 39216826 39217416 -113319843 + Lx8 LINE L1 6819 7473 0 3 884 2428 230 47 0 chr5 39217842 39218334 -113318925 + Lx6 LINE L1 6937 7451 -9 3 884 777 230 61 41 chr5 39218852 39218985 -113318274 - Lx7 LINE L1 0 7696 7554 3 884 207 0 0 0 chr5 39218985 39219008 -113318251 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3 884 777 230 61 41 chr5 39219008 39219119 -113318140 - Lx7 LINE L1 -143 7553 7447 3 884 483 134 0 0 chr5 39219135 39219217 -113318042 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 884 404 319 180 5 chr5 39219954 39220143 -113317116 + Tigger5 DNA MER2_type 3 224 -2182 3 884 1085 205 14 0 chr5 39220150 39220365 -113316894 - URR1A DNA MER1_type -4 222 5 3 884 773 313 0 5 chr5 39220380 39220576 -113316683 - RMER30 DNA MER1_type -6 196 2 3 884 248 296 45 18 chr5 39220594 39220704 -113316555 + Tigger5 DNA MER2_type 2294 2406 0 3 884 209 119 0 23 chr5 39221119 39221162 -113316097 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 3 884 773 107 21 7 chr5 39221525 39221666 -113315593 + (TTCTC)n Simple_repeat Simple_repeat 5 147 0 3 884 232 154 26 0 chr5 39221666 39221705 -113315554 + CT-rich Low_complexity Low_complexity 4 43 0 3 884 678 58 0 0 chr5 39221976 39222063 -113315196 + (CAAAG)n Simple_repeat Simple_repeat 1 87 0 3 884 306 0 0 0 chr5 39222322 39222356 -113314903 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 884 38738 30 0 0 chr5 39222452 39229069 -113308190 - L1Md_T LINE L1 0 6585 1 3 884 1153 255 69 26 chr5 39230469 39230819 -113306440 - MTE2a LTR MaLR -2 377 13 3 884 21 71 0 0 chr5 39230846 39230888 -113306371 + AT_rich Low_complexity Low_complexity 1 42 0 3 884 200 292 0 0 chr5 39230913 39230961 -113306298 + CT-rich Low_complexity Low_complexity 2 49 0 3 884 780 306 24 27 chr5 39233219 39233552 -113303707 + Lx9 LINE L1 7266 7597 -47 3 884 324 0 0 0 chr5 39233721 39233757 -113303502 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 884 542 150 60 0 chr5 39235824 39235991 -113301268 + CT-rich Low_complexity Low_complexity 2 178 0 3 884 550 277 51 64 chr5 39235991 39236303 -113300956 + RMER17C LTR ERVK 77 384 -26 3 884 414 0 0 0 chr5 39237328 39237374 -113299885 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 3 884 228 86 0 0 chr5 39237554 39237589 -113299670 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 884 1191 50 0 0 chr5 39237604 39237744 -113299515 - B1_Mus1 SINE Alu -8 140 1 3 884 687 241 83 25 chr5 39237945 39238149 -113299110 - MTD LTR MaLR -2 417 202 3 884 454 248 40 13 chr5 39238253 39238404 -113298855 - MTD LTR MaLR -252 167 13 3 884 231 36 0 0 chr5 39238526 39238554 -113298705 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 884 391 207 24 0 chr5 39238773 39238855 -113298404 + RSINE1 SINE B4 53 136 -29 3 884 468 91 0 0 chr5 39239643 39239709 -113297550 + (A)n Simple_repeat Simple_repeat 1 66 0 3 884 1384 276 43 33 chr5 39239928 39240444 -113296815 + RMER5 LTR ERV1 5 525 -9 3 884 275 351 75 9 chr5 39242970 39243183 -113294076 - MIR SINE MIR -22 240 14 3 884 1034 205 150 84 chr5 39243941 39244287 -113292972 - MTE2b LTR MaLR 0 379 11 3 884 620 128 0 0 chr5 39244345 39244439 -113292820 + B3A SINE B2 1 94 -104 3 884 290 98 0 0 chr5 39244573 39244614 -113292645 - MTE2a LTR MaLR -47 332 292 3 884 260 328 31 147 chr5 39244829 39245122 -113292137 + MTEa LTR MaLR 107 365 -14 3 884 212 250 0 0 chr5 39245931 39245975 -113291284 - MIRb SINE MIR -12 256 213 3 884 1437 233 75 6 chr5 39246194 39246543 -113290716 - ORR1D1 LTR MaLR -1 373 1 3 884 189 205 26 0 chr5 39248268 39248307 -113288952 + L2c LINE L2 3292 3331 -56 3 884 245 53 0 50 chr5 39248504 39248544 -113288715 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 3 884 2690 111 29 51 chr5 39248595 39249120 -113288139 - RLTR28 LTR ERVL -11 513 1 3 884 839 341 20 9 chr5 39249122 39249465 -113287794 + MLT1A0 LTR MaLR 18 364 -1 3 884 226 278 33 22 chr5 39249901 39249993 -113287266 - MER5A1 DNA MER1_type -33 133 41 3 884 522 260 0 0 chr5 39250129 39250416 -113286843 + (TG)n Simple_repeat Simple_repeat 1 287 0 3 884 494 278 137 58 chr5 39251034 39251378 -113285881 + MLT1C LTR MaLR 53 423 -44 3 884 223 217 67 0 chr5 39252087 39252147 -113285112 - MIRc SINE MIR -147 121 58 3 884 338 339 8 8 chr5 39252277 39252399 -113284860 - MTEb LTR MaLR 0 379 258 3 884 1151 97 213 16 chr5 39253200 39253388 -113283871 + URR1A DNA MER1_type 2 226 0 3 884 247 391 86 9 chr5 39254311 39254533 -113282726 - LTR33 LTR ERVL -247 268 30 3 884 25 0 0 0 chr5 39255845 39255870 -113281389 + AT_rich Low_complexity Low_complexity 1 25 0 3 884 249 262 155 0 chr5 39256995 39257079 -113280180 + Lx8 LINE L1 7256 7352 -121 3 884 281 123 259 0 chr5 39257203 39257284 -113279975 + RMER30 DNA MER1_type 100 201 -1 3 884 1340 266 125 10 chr5 39257408 39257911 -113279348 + L1M3 LINE L1 4059 4629 -1511 3 884 417 39 0 0 chr5 39257911 39257962 -113279297 + (TAA)n Simple_repeat Simple_repeat 2 52 0 3 884 1340 266 125 10 chr5 39257962 39258040 -113279219 + L1M3 LINE L1 4630 4706 -1434 3 884 826 232 263 14 chr5 39258048 39258373 -113278886 - MTD LTR MaLR 0 419 6 3 884 22 0 0 0 chr5 39258380 39258402 -113278857 + AT_rich Low_complexity Low_complexity 1 22 0 3 884 552 77 0 0 chr5 39259435 39259513 -113277746 + (GA)n Simple_repeat Simple_repeat 2 79 0 3 884 943 140 38 26 chr5 39260324 39260669 -113276590 + (TCTA)n Simple_repeat Simple_repeat 1 349 0 3 884 203 0 37 0 chr5 39260885 39260912 -113276347 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 3 884 470 253 127 41 chr5 39261732 39262000 -113275259 - B4A SINE B4 0 292 2 3 884 1249 171 0 0 chr5 39262358 39262574 -113274685 - URR1B DNA MER1_type -1 224 9 3 884 441 0 0 0 chr5 39262578 39262627 -113274632 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 3 884 182 328 73 22 chr5 39262717 39262854 -113274405 - MIR SINE MIR -74 188 45 3 884 468 99 0 0 chr5 39263649 39263720 -113273539 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 884 315 251 7 1 chr5 39263734 39263810 -113273449 - RSINE1 SINE B4 -214 78 1 3 884 452 148 0 22 chr5 39264076 39264166 -113273093 + (TATG)n Simple_repeat Simple_repeat 3 90 0 3 884 841 270 87 36 chr5 39264166 39264443 -113272816 - B4A SINE B4 0 292 2 3 884 777 254 26 0 chr5 39264781 39264974 -113272285 + ID_B1 SINE B4 2 199 -25 3 884 309 281 178 71 chr5 39265849 39266102 -113271157 + B4 SINE B4 2 281 -11 3 884 528 95 0 0 chr5 39266123 39266207 -113271052 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 884 230 83 0 59 chr5 39266622 39266673 -113270586 + (A)n Simple_repeat Simple_repeat 1 48 0 3 884 414 0 0 0 chr5 39267365 39267411 -113269848 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 884 228 372 41 8 chr5 39268663 39268785 -113268474 - MIRb SINE MIR -22 246 121 3 884 908 234 81 73 chr5 39268888 39269271 -113267988 - MLT1B LTR MaLR 0 390 5 3 884 367 269 36 36 chr5 39269668 39269780 -113267479 + ID_B1 SINE B4 106 217 -7 3 884 201 246 0 0 chr5 39270290 39270355 -113266904 + GA-rich Low_complexity Low_complexity 4 68 0 3 884 228 224 0 0 chr5 39271267 39271316 -113265943 + CT-rich Low_complexity Low_complexity 3 51 0 4 884 1238 61 0 0 chr5 39272455 39272603 -113264656 + B1_Mus1 SINE Alu 1 148 0 4 884 184 87 64 21 chr5 39272603 39272650 -113264609 + A-rich Low_complexity Low_complexity 3 51 0 4 884 462 18 0 0 chr5 39273899 39273954 -113263305 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 4 884 1282 67 17 0 chr5 39274123 39274303 -113262956 + B2_Mm2 SINE B2 13 195 0 4 884 697 242 30 64 chr5 39274678 39274881 -113262378 + B3A SINE B2 1 196 -2 4 884 716 274 95 17 chr5 39274888 39275129 -113262130 + Lx8 LINE L1 6263 6522 -951 4 884 831 218 11 28 chr5 39275133 39275312 -113261947 + ORR1B1 LTR MaLR 246 421 0 4 884 5562 165 65 66 chr5 39275311 39276667 -113260592 + ORR1B1-int LTR MaLR 2 1356 -607 4 884 1331 170 19 31 chr5 39276652 39276913 -113260346 + ORR1B1 LTR MaLR 129 386 -8 4 884 688 281 5 0 chr5 39276916 39277101 -113260158 + L1MA5 LINE L1 5744 5929 -371 4 884 198 0 0 0 chr5 39277114 39277136 -113260123 + (TC)n Simple_repeat Simple_repeat 2 23 0 4 884 311 0 26 0 chr5 39277136 39277175 -113260084 + (TATG)n Simple_repeat Simple_repeat 2 41 0 4 884 539 283 137 42 chr5 39277181 39277336 -113259923 - B4A SINE B4 -5 287 136 4 884 342 0 0 0 chr5 39277336 39277374 -113259885 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 884 539 283 137 42 chr5 39277374 39277480 -113259779 - B4A SINE B4 -157 135 1 4 884 180 111 0 0 chr5 39277833 39277860 -113259399 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 4 884 231 283 60 26 chr5 39278575 39278691 -113258568 + MLT1C LTR MaLR 1 120 -347 4 884 275 272 100 93 chr5 39278826 39278976 -113258283 + MLT1C LTR MaLR 211 463 -4 4 884 785 178 6 0 chr5 39279020 39279177 -113258082 + CT-rich Low_complexity Low_complexity 1 158 0 4 884 236 77 0 25 chr5 39279457 39279497 -113257762 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 4 884 1234 244 23 68 chr5 39279830 39280214 -113257045 - MTEa LTR MaLR -4 355 1 4 884 210 178 0 22 chr5 39281659 39281705 -113255554 + CT-rich Low_complexity Low_complexity 1 45 0 4 884 2070 100 6 9 chr5 39281948 39282248 -113255011 + RMER17A LTR ERVK 1 301 -450 4 884 825 76 8 15 chr5 39282248 39282381 -113254878 + (TCTCC)n Simple_repeat Simple_repeat 2 133 0 4 884 2070 160 48 51 chr5 39282381 39282636 -113254623 + RMER17A LTR ERVK 302 654 -97 4 884 255 31 0 0 chr5 39282636 39282668 -113254591 + (C)n Simple_repeat Simple_repeat 1 32 0 4 884 1283 169 54 56 chr5 39282668 39282767 -113254492 + RMER17A LTR ERVK 655 750 -1 4 884 617 252 61 0 chr5 39282937 39283068 -113254191 - B3 SINE B2 -76 140 2 4 884 1973 275 115 44 chr5 39283068 39283555 -113253704 + Lx9 LINE L1 6714 7224 -420 4 884 423 0 0 0 chr5 39283555 39283602 -113253657 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 884 1973 275 115 44 chr5 39283602 39283981 -113253278 + Lx9 LINE L1 7225 7642 -2 4 884 277 308 4 18 chr5 39284125 39284244 -113253015 + MTEb LTR MaLR 253 369 -1 4 884 377 329 131 42 chr5 39284931 39285402 -113251857 + MLT2B1 LTR ERVL 13 555 -1 4 884 1169 243 56 21 chr5 39287417 39287757 -113249502 + ORR1E LTR MaLR 4 355 -4 4 884 1256 251 55 22 chr5 39289090 39289457 -113247802 - MTEa LTR MaLR 0 379 1 4 884 432 0 0 0 chr5 39289872 39289920 -113247339 + (TGG)n Simple_repeat Simple_repeat 3 50 0 4 884 390 195 0 0 chr5 39290047 39290134 -113247125 + GA-rich Low_complexity Low_complexity 3 89 0 4 884 351 355 52 6 chr5 39291542 39291715 -113245544 - MLT1D LTR MaLR -76 429 249 4 884 513 318 0 0 chr5 39291733 39291862 -113245397 - B1F1 SINE Alu -13 136 8 4 884 235 257 61 87 chr5 39291887 39292002 -113245257 - MLT1D LTR MaLR -302 203 92 4 884 1649 152 8 114 chr5 39292049 39292436 -113244823 + ORR1B1 LTR MaLR 41 386 -8 4 884 583 270 79 138 chr5 39292558 39292936 -113244323 - RMER20B LTR ERVK -38 589 234 4 884 25 31 0 0 chr5 39293619 39293651 -113243608 + AT_rich Low_complexity Low_complexity 1 32 0 4 884 591 284 25 30 chr5 39294041 39294244 -113243015 + MLT1H LTR MaLR 13 214 -335 4 884 387 89 0 0 chr5 39294784 39294840 -113242419 + (CAA)n Simple_repeat Simple_repeat 1 56 0 4 884 187 352 94 47 chr5 39296383 39296511 -113240748 + MIR3 SINE MIR 60 193 -15 4 884 374 337 84 56 chr5 39296638 39296996 -113240263 + LTR78 LTR ERV1 3 370 -934 4 884 234 0 0 0 chr5 39297123 39297149 -113240110 + (T)n Simple_repeat Simple_repeat 1 26 0 4 884 234 308 44 61 chr5 39297149 39297263 -113239996 + LTR78 LTR ERV1 469 580 -724 4 884 411 239 41 88 chr5 39298518 39298659 -113238600 + B1F SINE Alu 2 135 -14 4 884 785 56 9 0 chr5 39298659 39298766 -113238493 + (CAAAG)n Simple_repeat Simple_repeat 5 112 0 4 884 228 233 13 40 chr5 39299966 39300042 -113237217 + CT-rich Low_complexity Low_complexity 2 75 0 4 884 369 317 205 16 chr5 39300392 39300831 -113236428 + L1MD1 LINE L1 15 536 -6097 4 884 489 259 69 86 chr5 39301009 39301313 -113235946 + L1MD1 LINE L1 920 1218 -5415 4 884 605 319 100 9 chr5 39301664 39302243 -113235016 + L1_Mur3 LINE L1 5093 5793 -507 4 884 443 283 7 19 chr5 39302262 39302417 -113234842 + (CATA)n Simple_repeat Simple_repeat 4 156 0 4 884 381 271 0 0 chr5 39302419 39302574 -113234685 + (CA)n Simple_repeat Simple_repeat 2 156 0 4 884 244 286 14 0 chr5 39302626 39302696 -113234563 + L1_Mur3 LINE L1 5828 5898 -405 4 884 799 293 70 34 chr5 39302943 39303388 -113233871 + L1MD1 LINE L1 3627 4087 -2450 4 884 38392 18 2 7 chr5 39303389 39308602 -113228657 + L1Md_A LINE L1 407 5586 -297 4 884 8525 35 1 0 chr5 39308602 39309597 -113227662 + L1Md_A LINE L1 5587 6582 0 4 884 290 247 96 0 chr5 39309705 39309778 -113227481 - B4 SINE B4 -14 278 199 4 884 662 261 109 60 chr5 39309947 39310176 -113227083 + L1MD1 LINE L1 4113 4353 -2184 4 884 1366 73 23 0 chr5 39310176 39310353 -113226906 + B2_Mm2 SINE B2 1 181 -14 4 884 662 261 109 60 chr5 39310353 39310473 -113226786 + L1MD1 LINE L1 4354 4479 -2058 4 884 3356 268 26 24 chr5 39310473 39311346 -113225913 + Lx7 LINE L1 6427 7301 -395 4 884 210 191 0 0 chr5 39311352 39311399 -113225860 + (TATG)n Simple_repeat Simple_repeat 4 50 0 4 884 579 53 0 0 chr5 39311483 39311558 -113225701 + (TG)n Simple_repeat Simple_repeat 1 75 0 4 884 222 164 0 0 chr5 39311558 39311613 -113225646 + GA-rich Low_complexity Low_complexity 2 56 0 4 884 794 286 53 26 chr5 39311755 39312222 -113225037 + L1MD1 LINE L1 4499 4978 -1559 4 884 1540 115 0 13 chr5 39312253 39312491 -113224768 + Lx2B LINE L1 6766 7000 0 4 884 616 255 103 2 chr5 39312511 39312860 -113224399 + L1MD1 LINE L1 5484 5861 -772 4 884 276 269 19 28 chr5 39312958 39313065 -113224194 + L1MD1 LINE L1 5861 5966 -784 4 884 230 304 53 18 chr5 39313123 39313237 -113224022 + L1MD1 LINE L1 6105 6222 -528 4 884 592 289 99 22 chr5 39313314 39313678 -113223581 + L1MD1 LINE L1 6242 6633 0 4 884 229 262 9 28 chr5 39313820 39313926 -113223333 + (TTTA)n Simple_repeat Simple_repeat 2 105 0 4 884 210 286 0 0 chr5 39314053 39314179 -113223080 + (CCAA)n Simple_repeat Simple_repeat 2 127 0 4 884 852 39 0 0 chr5 39314179 39314283 -113222976 + (TCCA)n Simple_repeat Simple_repeat 4 107 0 4 884 277 289 0 0 chr5 39314284 39314367 -113222892 + (CAGC)n Simple_repeat Simple_repeat 1 83 0 4 884 842 211 0 5 chr5 39314400 39314784 -113222475 + (CCAA)n Simple_repeat Simple_repeat 1 381 0 4 884 531 0 0 0 chr5 39315394 39315453 -113221806 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 884 800 308 66 61 chr5 39316767 39317023 -113220236 - MLT1C LTR MaLR -40 427 151 4 884 885 175 0 0 chr5 39317023 39317160 -113220099 + B1_Mur3 SINE Alu 1 137 -12 4 884 203 61 0 29 chr5 39317163 39317197 -113220062 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 4 884 800 308 66 61 chr5 39317197 39317208 -113220051 - MLT1C LTR MaLR -317 150 150 4 884 210 71 0 0 chr5 39317208 39317236 -113220023 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 4 884 800 308 66 61 chr5 39317236 39317388 -113219871 - MLT1C LTR MaLR -317 150 1 4 884 1269 258 14 121 chr5 39317646 39318066 -113219193 + MTEb LTR MaLR 5 379 0 4 884 609 14 0 0 chr5 39318666 39318736 -113218523 + (TC)n Simple_repeat Simple_repeat 2 71 0 4 884 4048 185 55 39 chr5 39318863 39319753 -113217506 + RMER13B LTR ERVK 1 904 -4 4 884 341 308 77 60 chr5 39319951 39320134 -113217125 + MER5A DNA MER1_type 3 188 -1 4 885 2161 136 35 0 chr5 39321622 39321967 -113215292 + RMER19A LTR ERVK 2 358 -379 4 885 2446 133 5 13 chr5 39322361 39322756 -113214503 + RMER19A LTR ERVK 346 737 0 4 885 251 229 42 28 chr5 39322856 39322928 -113214331 - L1MA4A LINE L1 -26 6277 6205 4 885 226 349 9 0 chr5 39322949 39323055 -113214204 - L1MA5 LINE L1 -3 6297 6191 4 885 498 324 41 9 chr5 39323516 39323734 -113213525 - MER63D DNA AcHobo -836 225 1 4 885 252 254 0 29 chr5 39326472 39326541 -113210718 + PB1D10 SINE Alu 45 111 -6 4 885 186 71 0 0 chr5 39326690 39326718 -113210541 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 4 885 290 253 0 13 chr5 39328358 39328434 -113208825 - L1M5 LINE L1 -912 5234 5160 4 885 306 306 18 9 chr5 39328441 39328550 -113208709 + MER117 DNA MER1_type 35 144 -53 4 885 418 273 102 0 chr5 39329274 39329402 -113207857 + MTEa LTR MaLR 1 141 -238 4 885 189 0 0 0 chr5 39329874 39329895 -113207364 + (CATAC)n Simple_repeat Simple_repeat 1 21 0 4 885 195 69 0 0 chr5 39330026 39330055 -113207204 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 885 279 226 0 129 chr5 39330280 39330412 -113206847 + Lx8 LINE L1 7359 7473 0 4 885 242 29 29 0 chr5 39330563 39330598 -113206661 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 885 428 0 0 19 chr5 39332106 39332159 -113205100 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 4 885 183 80 0 0 chr5 39332175 39332200 -113205059 + (CAAAT)n Simple_repeat Simple_repeat 2 26 0 4 885 916 274 127 16 chr5 39332327 39332806 -113204453 + RMER1B Other Other 13 534 -532 4 885 4206 195 148 16 chr5 39332811 39333708 -113203551 + RMER1A Other Other 4 1019 -11 4 885 1809 193 20 6 chr5 39334319 39334673 -113202586 + ORR1B2 LTR MaLR 1 359 -8 4 885 472 235 111 12 chr5 39338352 39338524 -113198735 + L1M4 LINE L1 4298 4486 -1660 4 885 385 19 37 0 chr5 39338689 39338743 -113198516 + (TTA)n Simple_repeat Simple_repeat 3 58 0 4 885 335 340 15 20 chr5 39338743 39338941 -113198318 + L1M4 LINE L1 4478 4674 -1472 4 885 382 194 0 0 chr5 39339211 39339283 -113197976 - MTEb LTR MaLR -1 378 307 4 885 1060 189 80 71 chr5 39339290 39339455 -113197804 - Lx7 LINE L1 0 7696 7522 4 885 414 39 0 0 chr5 39339455 39339507 -113197752 + (CAA)n Simple_repeat Simple_repeat 2 53 0 4 885 1060 189 80 71 chr5 39339507 39339678 -113197581 - Lx7 LINE L1 -175 7521 7357 4 885 409 116 10 50 chr5 39339700 39339800 -113197459 + GA-rich Low_complexity Low_complexity 2 97 0 4 885 1069 117 0 22 chr5 39339817 39340001 -113197258 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 885 315 217 0 0 chr5 39340015 39340075 -113197184 - Lx7 LINE L1 -375 7321 7262 4 885 452 282 131 54 chr5 39340392 39340651 -113196608 + L1MB7 LINE L1 5905 6183 -1 4 885 626 68 0 11 chr5 39341213 39341302 -113195957 + (TCC)n Simple_repeat Simple_repeat 3 90 0 4 885 1142 57 0 0 chr5 39341302 39341442 -113195817 - B1_Mus1 SINE Alu -6 142 3 4 885 414 0 0 0 chr5 39342655 39342701 -113194558 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 885 4358 110 3 2 chr5 39343791 39344391 -113192868 + MT2B LTR ERVL 1 601 0 5 885 229 350 56 12 chr5 39344525 39344687 -113192572 - MER58A DNA MER1_type -17 207 39 5 885 668 258 21 16 chr5 39346365 39346554 -113190705 - MTEb LTR MaLR -60 319 130 5 885 240 265 24 12 chr5 39346738 39346822 -113190437 + Tigger15a DNA TcMar 185 269 -446 5 885 1587 193 90 3 chr5 39346993 39347336 -113189923 - ORR1D1 LTR MaLR -1 373 1 5 885 396 0 0 0 chr5 39347751 39347795 -113189464 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 885 249 302 99 106 chr5 39348574 39348856 -113188403 + B4A SINE B4 1 280 -12 5 885 456 19 0 0 chr5 39348864 39348917 -113188342 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 885 618 14 0 0 chr5 39350292 39350363 -113186896 + (CAACC)n Simple_repeat Simple_repeat 3 73 0 5 885 203 210 118 4 chr5 39351075 39351143 -113186116 - MIRb SINE MIR -97 171 99 5 885 16133 7 0 0 chr5 39351794 39354281 -113182978 - L1Md_A LINE L1 0 6582 4096 5 885 319 388 62 59 chr5 39354520 39354761 -113182498 + ORR1E LTR MaLR 1 243 -116 5 885 2001 94 31 99 chr5 39354761 39355114 -113182145 + ORR1A4 LTR MaLR 1 329 0 5 885 319 388 62 59 chr5 39355114 39355176 -113182083 + ORR1E LTR MaLR 244 305 -54 5 885 3411 45 0 0 chr5 39355176 39355572 -113181687 + MTA_Mm LTR MaLR 1 396 0 5 885 289 365 54 44 chr5 39356287 39356582 -113180677 - LTR16C LTR ERVL -41 448 151 5 885 186 289 50 20 chr5 39357262 39357361 -113179898 + MIR SINE MIR 66 167 -95 5 885 217 180 20 0 chr5 39357422 39357472 -113179787 + (TTA)n Simple_repeat Simple_repeat 1 51 0 5 885 191 265 17 128 chr5 39358149 39358266 -113178993 - MIR3 SINE MIR -11 197 94 5 885 268 329 18 31 chr5 39358285 39358448 -113178811 - MER5A1 DNA MER1_type -5 161 1 5 885 239 388 37 21 chr5 39358680 39358867 -113178392 + LTR16A LTR ERVL 1 190 -261 5 885 361 198 22 44 chr5 39358962 39359052 -113178207 + MLT1B LTR MaLR 50 137 -253 5 885 273 324 102 23 chr5 39359488 39359665 -113177594 + ERVL-B4-int LTR ERVL 2394 2584 -3130 5 885 847 225 5 62 chr5 39359866 39360060 -113177199 + B4 SINE B4 2 184 -108 5 885 450 0 0 0 chr5 39360165 39360215 -113177044 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 885 962 255 158 25 chr5 39360989 39361351 -113175908 - MTD LTR MaLR 0 419 10 5 885 242 315 38 15 chr5 39362675 39362807 -113174452 - Lx8 LINE L1 -5 7468 7334 5 885 204 67 0 0 chr5 39362944 39362974 -113174285 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 885 1126 27 27 13 chr5 39363317 39363467 -113173792 + L1Md_F3 LINE L1 6433 6584 0 5 885 233 96 0 55 chr5 39363479 39363534 -113173725 + A-rich Low_complexity Low_complexity 1 52 0 5 885 507 315 92 32 chr5 39363850 39364165 -113173094 - MLT1D LTR MaLR -72 433 100 5 885 377 212 22 14 chr5 39364550 39364689 -113172570 + GA-rich Low_complexity Low_complexity 3 142 0 5 885 333 250 63 27 chr5 39365126 39365237 -113172022 - MLT1A1 LTR MaLR -12 396 282 5 885 2475 283 41 76 chr5 39366043 39366211 -113171048 - Lx9 LINE L1 0 7644 7465 5 885 420 20 0 0 chr5 39366211 39366260 -113170999 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 885 2475 283 41 76 chr5 39366260 39367160 -113170099 - Lx9 LINE L1 -180 7464 6613 5 885 513 252 19 19 chr5 39367220 39367374 -113169885 - L1M2 LINE L1 -1463 4680 4527 5 885 185 295 0 0 chr5 39368044 39368105 -113169154 - L2c LINE L2 -89 3298 3238 5 885 408 274 14 152 chr5 39368593 39368659 -113168600 + RMER30 DNA MER1_type 12 79 -123 5 885 482 308 74 5 chr5 39368659 39368861 -113168398 + ID_B1 SINE B4 2 217 -7 5 885 408 274 14 152 chr5 39368861 39368894 -113168365 + RMER30 DNA MER1_type 80 96 -106 5 885 3344 104 2 37 chr5 39368894 39369384 -113167875 + MT2C_Mm LTR ERVL 1 473 -2 5 885 408 274 14 152 chr5 39369384 39369494 -113167765 + RMER30 DNA MER1_type 97 193 -9 5 885 188 272 85 21 chr5 39370949 39371043 -113166216 - MER5A DNA MER1_type -8 181 82 5 885 6903 161 50 79 chr5 39371171 39373019 -113164240 - Lx5 LINE L1 0 7050 5289 5 885 4072 62 0 10 chr5 39373019 39373537 -113163722 - L1Md_F2 LINE L1 -3 6579 6067 5 885 3378 143 59 18 chr5 39373537 39373572 -113163687 - Lx5 LINE L1 -589 5288 5246 5 885 9926 20 0 0 chr5 39373585 39375395 -113161864 - L1Md_T LINE L1 0 6582 4772 5 885 434 83 0 0 chr5 39375393 39375453 -113161806 - L1_Mur2 LINE L1 -581 5296 5237 5 885 2686 88 8 13 chr5 39375469 39375850 -113161409 - L1_Mus1 LINE L1 -1 6566 6188 5 885 1978 75 34 8 chr5 39375848 39376115 -113161144 + L1_Mus1 LINE L1 6293 6566 -1 5 885 256 294 0 14 chr5 39376198 39376267 -113160992 + ID4 SINE ID 2 69 -14 5 885 3147 41 0 8 chr5 39376305 39376694 -113160565 + L1Md_F2 LINE L1 6197 6582 0 5 885 284 289 10 10 chr5 39376889 39376987 -113160272 + MTEb LTR MaLR 1 98 -281 5 885 25476 148 16 12 chr5 39376992 39380857 -113156402 + Lx LINE L1 556 4425 -1458 5 885 954 123 31 0 chr5 39380857 39381020 -113156239 + L1_Mus3 LINE L1 6471 6638 0 5 885 25476 160 24 10 chr5 39381020 39383218 -113154041 + Lx LINE L1 4426 6649 -5 5 885 635 295 85 12 chr5 39383218 39383465 -113153794 + MTEb LTR MaLR 102 366 -13 5 885 3704 58 2 2 chr5 39383465 39383929 -113153330 - L1_Mus2 LINE L1 -400 6166 5703 5 885 3329 68 2 47 chr5 39383929 39384379 -113152880 + L1_Mus2 LINE L1 6137 6566 0 5 885 375 23 0 0 chr5 39384405 39384449 -113152810 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 5 885 337 370 23 103 chr5 39385806 39386107 -113151152 - ORR1E LTR MaLR -42 317 41 5 885 1175 259 102 29 chr5 39386401 39386864 -113150395 + Lx8 LINE L1 6967 7460 -13 5 885 265 333 204 25 chr5 39387028 39387385 -113149874 + MLT1C LTR MaLR 43 463 -4 5 885 252 0 0 0 chr5 39387415 39387443 -113149816 + (CAGG)n Simple_repeat Simple_repeat 1 28 0 5 885 708 289 57 70 chr5 39387606 39387978 -113149281 + L1MA4 LINE L1 5654 6020 -280 5 885 194 210 11 147 chr5 39389057 39389152 -113148107 - MIRc SINE MIR -142 126 45 5 885 21 0 0 0 chr5 39389349 39389370 -113147889 + AT_rich Low_complexity Low_complexity 1 21 0 5 885 1271 174 38 5 chr5 39390133 39390346 -113146913 - URR1B DNA MER1_type 0 225 6 5 885 352 296 129 52 chr5 39390418 39390689 -113146570 + B4A SINE B4 1 292 0 5 885 300 190 0 0 chr5 39390692 39390771 -113146488 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 885 609 191 0 0 chr5 39390782 39391005 -113146254 + (CA)n Simple_repeat Simple_repeat 1 223 0 5 885 196 311 11 43 chr5 39391459 39391553 -113145706 - MIR SINE MIR -142 120 30 5 885 244 261 0 0 chr5 39391568 39391633 -113145626 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 5 885 272 274 14 14 chr5 39391871 39391945 -113145314 + CT-rich Low_complexity Low_complexity 4 77 0 5 885 7988 35 0 0 chr5 39393255 39394250 -113143009 - L1Md_A LINE L1 0 6582 5588 5 885 401 309 84 15 chr5 39394314 39394587 -113142672 - L1MA8 LINE L1 -55 6236 5945 5 885 418 269 0 0 chr5 39394707 39394815 -113142444 - L1MA8 LINE L1 -533 5767 5660 5 885 799 10 10 10 chr5 39395162 39395263 -113141996 + (CAAAC)n Simple_repeat Simple_repeat 1 101 0 5 885 987 123 0 0 chr5 39396664 39396818 -113140441 + (TTTC)n Simple_repeat Simple_repeat 4 157 0 5 885 276 185 0 0 chr5 39396820 39396874 -113140385 + CT-rich Low_complexity Low_complexity 2 55 0 5 885 1396 66 0 0 chr5 39396875 39397057 -113140202 - L1_Mus1 LINE L1 0 6567 6386 5 885 288 208 28 0 chr5 39397114 39397220 -113140039 + CT-rich Low_complexity Low_complexity 2 110 0 5 885 457 279 75 42 chr5 39397231 39397470 -113139789 - Lx9 LINE L1 -356 7288 7042 5 885 36 40 0 0 chr5 39397636 39397686 -113139573 + AT_rich Low_complexity Low_complexity 1 50 0 5 885 486 336 77 0 chr5 39397692 39397835 -113139424 - RSINE1 SINE B4 -6 159 6 5 885 312 357 113 21 chr5 39397863 39398049 -113139210 - MLT1C LTR MaLR -79 388 186 5 885 549 96 0 0 chr5 39398049 39398143 -113139116 + (TC)n Simple_repeat Simple_repeat 2 95 0 5 885 21 36 0 0 chr5 39398656 39398684 -113138575 + AT_rich Low_complexity Low_complexity 1 28 0 5 885 190 56 56 0 chr5 39400239 39400275 -113136984 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 5 885 477 0 0 0 chr5 39400494 39400547 -113136712 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 885 1083 67 0 0 chr5 39400894 39401043 -113136216 + L1Md_A LINE L1 6434 6582 0 5 885 4360 12 12 0 chr5 39401207 39401694 -113135565 - MT2_Mm LTR ERVL 0 493 1 5 885 185 296 71 125 chr5 39402577 39402689 -113134570 - L4 LINE RTE -205 1824 1719 5 885 446 343 65 65 chr5 39403331 39403621 -113133638 + B4 SINE B4 1 290 -2 5 885 450 0 0 0 chr5 39403685 39403735 -113133524 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 885 23 0 0 0 chr5 39403886 39403909 -113133350 + AT_rich Low_complexity Low_complexity 1 23 0 5 885 469 277 8 0 chr5 39404559 39404678 -113132581 + MER67A LTR ERV1 34 153 -390 5 885 444 177 139 91 chr5 39404805 39404944 -113132315 - Lx9 LINE L1 0 7644 7505 5 885 297 0 0 0 chr5 39404944 39404977 -113132282 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 885 444 177 139 91 chr5 39404977 39405043 -113132216 - Lx9 LINE L1 -140 7504 7424 5 885 2809 56 12 0 chr5 39405043 39405385 -113131874 - ORR1A1 LTR MaLR 0 346 1 5 885 444 177 139 91 chr5 39405385 39405408 -113131851 - Lx9 LINE L1 -221 7423 7404 5 885 28992 89 34 13 chr5 39405409 39410644 -113126615 + L1Md_F2 LINE L1 240 5585 -298 5 885 7526 74 4 4 chr5 39410645 39411641 -113125618 + L1Md_F2 LINE L1 5587 6582 0 5 885 369 275 178 38 chr5 39411676 39411861 -113125398 + Lx9 LINE L1 6729 6939 -705 5 885 310 291 95 47 chr5 39411861 39412006 -113125253 + MER67A LTR ERV1 327 478 -65 5 885 1834 218 50 8 chr5 39412006 39412408 -113124851 + MTD LTR MaLR 1 419 0 5 885 608 320 84 60 chr5 39412660 39412846 -113124413 - MTE2a LTR MaLR 0 379 185 5 885 231 88 0 0 chr5 39412846 39412880 -113124379 + (CTTG)n Simple_repeat Simple_repeat 3 36 0 5 885 608 320 84 60 chr5 39412880 39413062 -113124197 - MTE2a LTR MaLR -195 184 2 5 885 279 71 0 0 chr5 39414087 39414129 -113123130 + (CAAA)n Simple_repeat Simple_repeat 4 45 0 5 885 288 0 0 0 chr5 39414488 39414520 -113122739 + (T)n Simple_repeat Simple_repeat 1 32 0 5 885 783 308 53 73 chr5 39414637 39415033 -113122226 + MLT1B LTR MaLR 1 388 -2 5 885 1203 255 84 41 chr5 39415078 39415363 -113121896 + ORR1E LTR MaLR 1 312 -47 5 885 3438 49 0 11 chr5 39415363 39415796 -113121463 - L1Md_F3 LINE L1 -13 6571 6144 6 885 1203 255 84 41 chr5 39415796 39415854 -113121405 + ORR1E LTR MaLR 313 358 -1 5 885 357 333 23 47 chr5 39416439 39416568 -113120691 + MLT1G3 LTR MaLR 209 334 -261 6 885 251 310 159 2 chr5 39416711 39416816 -113120443 + MLT1G3 LTR MaLR 396 521 -74 6 885 933 251 4 97 chr5 39416981 39417219 -113120040 - B3 SINE B2 0 216 1 6 885 299 252 0 29 chr5 39417352 39417454 -113119805 + L1M5 LINE L1 4479 4577 -1569 6 885 1249 285 105 28 chr5 39418740 39419206 -113118053 - Tigger7 DNA MER2_type -1983 508 7 6 885 429 20 0 0 chr5 39420027 39420077 -113117182 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 885 22 0 0 0 chr5 39420739 39420761 -113116498 + AT_rich Low_complexity Low_complexity 1 22 0 6 885 338 339 67 25 chr5 39421073 39421312 -113115947 + MIR SINE MIR 14 262 0 6 885 263 96 47 35 chr5 39421466 39421552 -113115707 + CT-rich Low_complexity Low_complexity 1 87 0 6 885 301 394 0 30 chr5 39421556 39421721 -113115538 + C-rich Low_complexity Low_complexity 1 160 0 6 885 252 0 0 0 chr5 39422092 39422120 -113115139 + (TTG)n Simple_repeat Simple_repeat 3 30 0 6 885 5906 85 12 1 chr5 39422128 39422929 -113114330 - L1_Mus4 LINE L1 0 6636 5827 6 885 36185 30 0 0 chr5 39422938 39429361 -113107898 - L1Md_T LINE L1 0 6585 66 6 885 1837 61 0 16 chr5 39429362 39429613 -113107646 - L1_Mus4 LINE L1 -794 5842 5596 6 885 2370 152 7 0 chr5 39429612 39430020 -113107239 + L1_Mm LINE L1 5200 5610 -273 6 885 305 238 24 16 chr5 39430624 39430748 -113106511 + L1MA4 LINE L1 6113 6237 -63 6 885 569 211 23 8 chr5 39431366 39431625 -113105634 + (TATG)n Simple_repeat Simple_repeat 1 262 0 6 885 436 286 72 36 chr5 39431627 39431906 -113105353 - B4A SINE B4 -2 290 2 6 885 599 285 0 56 chr5 39432803 39432963 -113104296 + B3A SINE B2 1 151 -47 6 885 444 118 0 0 chr5 39432967 39433035 -113104224 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 885 2028 148 63 9 chr5 39433345 39433693 -113103566 + ORR1B2 LTR MaLR 1 367 0 6 885 707 313 61 12 chr5 39433757 39434003 -113103256 - MLT1E2 LTR MaLR -23 604 347 6 885 227 308 76 9 chr5 39434250 39434355 -113102904 - MLT1E2 LTR MaLR -423 201 90 6 885 496 241 152 0 chr5 39434363 39434515 -113102744 - MTD LTR MaLR 0 419 244 6 885 1119 83 13 0 chr5 39434515 39434672 -113102587 + B2_Mm1t SINE B2 2 160 -33 6 885 423 0 0 0 chr5 39434672 39434719 -113102540 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 6 885 699 242 31 62 chr5 39434728 39434956 -113102303 - MTD LTR MaLR -157 262 5 6 885 228 250 13 0 chr5 39435228 39435304 -113101955 - L1MA5 LINE L1 -4 6296 6220 6 885 710 298 57 55 chr5 39435611 39436012 -113101247 - Lx8 LINE L1 -158 7315 6914 6 885 21 0 0 0 chr5 39436152 39436173 -113101086 + AT_rich Low_complexity Low_complexity 1 21 0 6 885 237 159 0 0 chr5 39437487 39437531 -113099728 + CT-rich Low_complexity Low_complexity 3 46 0 6 885 457 325 59 44 chr5 39438215 39438739 -113098520 - L1ME1 LINE L1 -7 6172 5641 6 885 1044 294 32 43 chr5 39438990 39439335 -113097924 - ORR1E LTR MaLR -4 355 15 6 885 422 288 111 6 chr5 39439493 39439670 -113097589 - ORR1E-int LTR MaLR -39 1541 1326 6 885 409 397 53 35 chr5 39439666 39440042 -113097217 - ORR1E-int LTR MaLR -169 1411 1029 6 885 423 329 25 12 chr5 39440122 39440282 -113096977 - MLT1D LTR MaLR -263 242 81 6 885 626 323 34 96 chr5 39442564 39442735 -113094524 + MTD LTR MaLR 43 208 -211 6 885 979 119 0 14 chr5 39442735 39442880 -113094379 + B1_Mm SINE Alu 5 147 0 6 885 626 323 34 96 chr5 39442880 39443030 -113094229 + MTD LTR MaLR 209 344 -75 6 885 423 337 70 100 chr5 39443063 39443432 -113093827 - LTR81B LTR ERV1? -1009 384 27 6 885 703 283 26 0 chr5 39445175 39445327 -113091932 + B3A SINE B2 1 156 -42 6 885 272 303 52 60 chr5 39445513 39445629 -113091630 - PB1D7 SINE Alu -5 115 1 6 885 311 236 42 0 chr5 39446146 39446218 -113091041 + HAL1-3A_ME LINE L1 1977 2051 -807 6 885 4925 149 12 5 chr5 39446237 39446999 -113090260 + Lx LINE L1 5881 6647 -7 6 885 224 209 0 0 chr5 39447578 39447621 -113089638 + CT-rich Low_complexity Low_complexity 1 43 0 6 885 210 37 0 0 chr5 39447702 39447729 -113089530 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 885 3169 129 0 47 chr5 39448747 39449276 -113087983 - L1_Mm LINE L1 -721 5162 4659 6 885 3276 116 6 135 chr5 39449273 39449406 -113087853 + L1_Mus4 LINE L1 5330 5462 -421 6 885 1190 49 7 34 chr5 39449406 39449553 -113087706 + B1_Mus2 SINE Alu 5 147 0 6 885 8102 74 7 30 chr5 39449553 39450807 -113086452 + L1_Mus4 LINE L1 5463 6636 0 6 885 357 296 72 77 chr5 39450864 39451058 -113086201 - MER3 DNA MER1_type -10 199 7 6 885 566 301 71 103 chr5 39451206 39451602 -113085657 - L1MB2 LINE L1 0 6171 5789 6 885 313 236 225 9 chr5 39452379 39452490 -113084769 + MuRRS4-int LTR ERV1 1012 1146 -4171 6 886 374 288 34 26 chr5 39452832 39453005 -113084254 + MuRRS4-int LTR ERV1 2344 2496 -2567 6 886 468 305 39 0 chr5 39453027 39453155 -113084104 + MLT-int LTR MaLR 336 468 -1267 6 886 282 376 48 17 chr5 39453298 39453528 -113083731 - L1M5 LINE L1 -875 5271 5035 6 886 192 77 0 0 chr5 39453870 39453896 -113083363 + (CTCA)n Simple_repeat Simple_repeat 1 26 0 6 886 530 275 188 0 chr5 39454028 39454166 -113083093 + MTD LTR MaLR 111 274 -145 6 886 192 224 149 0 chr5 39454169 39454236 -113083023 + L3 LINE CR1 4158 4234 -255 6 886 8081 39 9 4 chr5 39455212 39456141 -113081118 + L1Md_F2 LINE L1 5638 6570 -12 6 886 568 355 93 25 chr5 39456729 39457085 -113080174 + MLT1A1 LTR MaLR 26 405 -3 6 886 228 333 0 0 chr5 39457497 39457569 -113079690 - MLT1F1 LTR MaLR -9 560 489 6 886 228 365 12 12 chr5 39457782 39457868 -113079391 - MLT1F1 LTR MaLR -505 86 1 6 886 588 231 0 0 chr5 39458802 39458958 -113078301 + (CA)n Simple_repeat Simple_repeat 1 156 0 6 886 492 295 8 15 chr5 39459683 39459817 -113077442 - B1F SINE Alu -7 142 10 6 886 390 21 0 0 chr5 39460022 39460069 -113077190 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 886 1718 199 75 31 chr5 39460761 39461119 -113076140 - ORR1D1 LTR MaLR 0 374 1 6 886 685 197 31 23 chr5 39461489 39461619 -113075640 + RSINE1 SINE B4 2 132 -33 6 886 462 295 95 34 chr5 39462275 39462410 -113074849 + B3A SINE B2 8 154 -44 6 886 471 48 0 0 chr5 39462410 39462472 -113074787 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 886 462 295 95 34 chr5 39462472 39462515 -113074744 + B3A SINE B2 155 197 -1 6 886 413 229 67 103 chr5 39463245 39463276 -113073983 - B2_Mm2 SINE B2 -7 188 160 6 886 459 0 0 0 chr5 39463276 39463327 -113073932 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 886 711 229 67 103 chr5 39463327 39463490 -113073769 - B3A SINE B2 -36 159 1 6 886 27 62 0 0 chr5 39463667 39463715 -113073544 + AT_rich Low_complexity Low_complexity 1 48 0 6 886 833 246 31 10 chr5 39465396 39465589 -113071670 + MTE2b LTR MaLR 1 197 -182 6 886 1976 181 10 78 chr5 39466174 39466259 -113071000 + ORR1C1 LTR MaLR 1 82 -296 6 886 555 209 399 0 chr5 39466259 39466417 -113070842 - URR1B DNA MER1_type -3 222 2 6 886 1976 181 10 78 chr5 39466417 39466727 -113070532 + ORR1C1 LTR MaLR 83 369 -9 6 886 490 242 223 22 chr5 39466722 39466946 -113070313 + MTD LTR MaLR 151 419 0 6 886 948 175 112 31 chr5 39466949 39467207 -113070052 + Lx7 LINE L1 6826 7100 -360 6 886 921 238 199 36 chr5 39467207 39467599 -113069660 + Lx7 LINE L1 7225 7680 -16 6 886 1586 149 78 111 chr5 39468689 39469113 -113068146 + RMER17C LTR ERVK 1 410 0 6 886 399 21 0 0 chr5 39469727 39469775 -113067484 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 886 370 259 22 24 chr5 39470538 39470657 -113066602 - MLT1C LTR MaLR -53 414 289 6 886 357 325 35 9 chr5 39470727 39470842 -113066417 + RSINE1 SINE B4 3 120 -45 6 886 252 0 0 0 chr5 39470867 39470895 -113066364 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 6 886 343 309 47 51 chr5 39470905 39471120 -113066139 - MLT1C LTR MaLR -173 217 4 6 886 584 116 11 0 chr5 39471150 39471245 -113066014 + (TG)n Simple_repeat Simple_repeat 2 97 0 6 886 554 358 10 10 chr5 39471246 39471438 -113065821 - B4A SINE B4 -16 276 85 6 886 729 185 0 0 chr5 39471471 39471644 -113065615 + (TCCA)n Simple_repeat Simple_repeat 1 173 0 6 886 203 152 0 0 chr5 39471646 39471679 -113065580 + (CCAA)n Simple_repeat Simple_repeat 1 33 0 6 886 505 311 45 45 chr5 39471979 39472292 -113064967 + L1MB7 LINE L1 5839 6151 -33 6 886 699 75 0 0 chr5 39472698 39472792 -113064467 + (TG)n Simple_repeat Simple_repeat 1 94 0 6 886 387 378 94 16 chr5 39472929 39473174 -113064085 - MLT1E1A LTR MaLR -131 549 286 6 886 585 320 83 43 chr5 39473700 39474026 -113063233 - MLT1B LTR MaLR -42 348 10 6 886 243 0 0 0 chr5 39475083 39475110 -113062149 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 886 1285 28 0 0 chr5 39475116 39475260 -113061999 - B1_Mm SINE Alu 0 147 4 6 886 18255 38 1 0 chr5 39475780 39478615 -113058644 - L1Md_T LINE L1 0 6582 3746 6 886 303 93 0 0 chr5 39479358 39479401 -113057858 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 886 586 224 8 39 chr5 39479402 39479532 -113057727 - B3 SINE B2 -89 127 2 6 886 288 210 0 0 chr5 39480118 39480199 -113057060 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 886 360 312 142 14 chr5 39480653 39480871 -113056388 + L2 LINE L2 2194 2439 -980 6 886 373 314 31 6 chr5 39483377 39483537 -113053722 + CT-rich Low_complexity Low_complexity 4 167 0 6 886 263 236 18 0 chr5 39484197 39484252 -113053007 + CT-rich Low_complexity Low_complexity 2 57 0 6 886 1539 244 116 49 chr5 39484490 39485016 -113052243 - RMER4B LTR ERVK -8 577 17 6 886 667 273 109 9 chr5 39485025 39485236 -113052023 - B4A SINE B4 -11 281 50 6 886 234 340 30 55 chr5 39485525 39485690 -113051569 + MER110A LTR ERV1 289 449 -19 6 886 180 0 0 0 chr5 39487065 39487085 -113050174 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 886 27 29 0 0 chr5 39488875 39488909 -113048350 + AT_rich Low_complexity Low_complexity 1 34 0 6 886 511 315 8 30 chr5 39489706 39489837 -113047422 + B3A SINE B2 2 129 -69 6 886 596 309 57 26 chr5 39489866 39490095 -113047164 + MTE2b LTR MaLR 43 278 -101 6 886 246 157 59 0 chr5 39490167 39490218 -113047041 - MIR SINE MIR -98 164 111 6 886 881 282 98 21 chr5 39490684 39491073 -113046186 + MLT1D LTR MaLR 3 381 -124 6 886 200 378 61 26 chr5 39491193 39491307 -113045952 + MIR SINE MIR 20 137 -125 7 886 699 353 68 22 chr5 39492416 39492784 -113044475 - Zaphod DNA Tip100 -3581 450 66 7 886 472 267 0 69 chr5 39492786 39493020 -113044239 + (TATATG)n Simple_repeat Simple_repeat 1 217 0 7 886 252 100 0 0 chr5 39493054 39493094 -113044165 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 886 397 330 139 10 chr5 39494129 39494331 -113042928 - MLT1C LTR MaLR -26 441 214 7 886 229 266 218 0 chr5 39494346 39494470 -113042789 - MLT1C LTR MaLR -343 162 12 7 886 578 279 137 79 chr5 39494471 39494814 -113042445 + MTE2a LTR MaLR 3 365 -14 7 886 237 321 80 19 chr5 39495041 39495203 -113042056 - MIR SINE MIR -35 227 56 7 886 939 18 0 0 chr5 39496576 39496685 -113040574 + (CA)n Simple_repeat Simple_repeat 2 110 0 7 886 1018 233 103 44 chr5 39496791 39496975 -113040284 - RLTR14 LTR ERV1 -44 338 142 7 886 2565 169 34 5 chr5 39496975 39497384 -113039875 - MTC LTR MaLR 0 421 1 7 886 1018 233 103 44 chr5 39497384 39497518 -113039741 - RLTR14 LTR ERV1 -241 141 1 7 886 366 352 36 18 chr5 39497866 39497976 -113039283 - PB1D10 SINE Alu -1 116 5 7 886 279 306 68 31 chr5 39498099 39498261 -113038998 - MER65-int LTR ERV1 -92 4779 4612 7 886 297 169 0 0 chr5 39498728 39498787 -113038472 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 886 383 365 89 43 chr5 39499069 39499438 -113037821 - RMER15-int LTR ERVL -2775 2224 1839 7 886 195 311 13 13 chr5 39500706 39500781 -113036478 + MIRc SINE MIR 127 201 -67 1 886 360 315 196 45 chr5 39500818 39501191 -113036068 - MLT1H LTR MaLR -2 487 99 2 886 345 24 0 0 chr5 39501539 39501581 -113035678 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 886 558 43 0 0 chr5 39501581 39501649 -113035610 + (GA)n Simple_repeat Simple_repeat 1 69 0 4 886 357 326 79 45 chr5 39502136 39502428 -113034831 + L2a LINE L2 3122 3423 -3 5 886 29 47 0 0 chr5 39502453 39502496 -113034763 + AT_rich Low_complexity Low_complexity 1 43 0 6 886 1910 57 11 40 chr5 39502986 39503260 -113033999 + L1Md_F2 LINE L1 6317 6582 0 7 886 7460 152 96 7 chr5 39503264 39504688 -113032571 + Lx4B LINE L1 5545 7054 -4 8 886 294 95 0 0 chr5 39504690 39504732 -113032527 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 9 886 946 123 112 0 chr5 39504814 39504984 -113032275 - L1_Mus3 LINE L1 -46 6592 6404 1 886 254 400 62 54 chr5 39505077 39505260 -113031999 - LTR16C LTR ERVL -80 409 217 1 886 1055 101 0 0 chr5 39505260 39505398 -113031861 - B1_Mus1 SINE Alu -10 138 1 1 886 254 400 62 54 chr5 39505398 39505586 -113031673 - LTR16C LTR ERVL -273 216 35 1 886 306 294 16 91 chr5 39506282 39506307 -113030952 + L1M4b LINE L1 2185 2210 -4892 1 886 812 149 189 65 chr5 39506307 39506508 -113030751 - URR1A DNA MER1_type 0 226 1 1 886 316 278 19 53 chr5 39506508 39506669 -113030590 + L1M4b LINE L1 2123 2357 -4745 1 886 200 180 80 0 chr5 39506796 39506846 -113030413 + A-rich Low_complexity Low_complexity 6 59 0 1 886 200 225 0 0 chr5 39507149 39507189 -113030070 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 886 223 338 67 37 chr5 39507538 39507673 -113029586 + B1F2 SINE Alu 6 144 -5 1 886 318 277 63 36 chr5 39507778 39508135 -113029124 + L1M4b LINE L1 5921 6287 -737 1 886 365 346 12 31 chr5 39508813 39508974 -113028285 + RSINE1 SINE B4 8 165 0 1 886 35 83 0 0 chr5 39508976 39509060 -113028199 + AT_rich Low_complexity Low_complexity 1 84 0 1 886 1170 70 0 0 chr5 39509068 39509211 -113028048 + B1_Mus1 SINE Alu 1 143 -5 2 886 240 59 0 0 chr5 39509215 39509249 -113028010 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 2 886 23 54 0 0 chr5 39509316 39509353 -113027906 + AT_rich Low_complexity Low_complexity 1 37 0 2 886 648 0 0 0 chr5 39510166 39510238 -113027021 + (TTTTC)n Simple_repeat Simple_repeat 1 72 0 2 886 1235 84 0 6 chr5 39510240 39510419 -113026840 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 2 886 197 65 32 0 chr5 39510420 39510451 -113026808 + (CCCCCT)n Simple_repeat Simple_repeat 3 34 0 2 886 695 44 11 0 chr5 39510458 39510549 -113026710 + (TTCTC)n Simple_repeat Simple_repeat 3 94 0 2 886 212 315 11 22 chr5 39510624 39510715 -113026544 + MIR SINE MIR 92 181 -81 2 886 32 57 0 0 chr5 39510717 39510770 -113026489 + AT_rich Low_complexity Low_complexity 1 53 0 2 886 1045 257 112 14 chr5 39510877 39511153 -113026106 - MTEa LTR MaLR -67 312 10 2 886 538 306 16 29 chr5 39511157 39511365 -113025894 + MLT1A0 LTR MaLR 118 426 -41 3 886 188 286 108 37 chr5 39511542 39511650 -113025609 - MIRb SINE MIR -137 131 23 3 886 29 28 0 0 chr5 39512848 39512884 -113024375 + AT_rich Low_complexity Low_complexity 1 36 0 3 886 191 236 39 136 chr5 39513165 39513268 -113023991 + L2a LINE L2 3102 3194 -232 3 886 198 71 0 0 chr5 39514938 39514966 -113022293 + (TTA)n Simple_repeat Simple_repeat 1 28 0 3 886 470 354 79 93 chr5 39515609 39515889 -113021370 - B4A SINE B4 -16 276 1 3 886 236 54 54 0 chr5 39516298 39516335 -113020924 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 886 315 0 0 0 chr5 39517118 39517153 -113020106 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 886 379 310 93 43 chr5 39518250 39518412 -113018847 - MER20 DNA MER1_type 0 219 50 3 886 685 274 29 0 chr5 39518575 39518779 -113018480 - B3 SINE B2 -5 211 2 3 886 30 0 0 0 chr5 39521980 39522010 -113015249 + AT_rich Low_complexity Low_complexity 1 30 0 4 886 3223 209 68 14 chr5 39522141 39523101 -113014158 + RMER1B Other Other 3 1053 -13 4 886 214 342 53 18 chr5 39524075 39524188 -113013071 - MIRb SINE MIR -94 174 58 4 886 357 315 27 20 chr5 39524850 39524999 -113012260 + B3 SINE B2 67 216 0 4 886 258 310 0 10 chr5 39526581 39526682 -113010577 + CT-rich Low_complexity Low_complexity 2 101 0 4 886 1283 277 67 6 chr5 39527364 39527705 -113009554 - MTD LTR MaLR -50 369 8 4 886 359 73 0 18 chr5 39528295 39528351 -113008908 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 4 886 609 14 0 0 chr5 39529051 39529121 -113008138 + (TCCC)n Simple_repeat Simple_repeat 1 70 0 4 886 467 122 10 20 chr5 39529122 39529222 -113008037 - Lx LINE L1 0 6654 6556 4 886 414 0 0 0 chr5 39530416 39530462 -113006797 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 886 636 261 55 15 chr5 39532961 39533163 -113004096 + B3 SINE B2 3 212 -4 5 886 23 0 0 0 chr5 39534486 39534509 -113002750 + AT_rich Low_complexity Low_complexity 1 23 0 5 886 342 231 138 9 chr5 39534535 39534644 -113002615 + RSINE1 SINE B4 3 125 -40 5 886 192 216 0 0 chr5 39534757 39534808 -113002451 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 5 886 185 324 84 0 chr5 39535309 39535380 -113001879 - MIRb SINE MIR -44 224 148 5 886 387 335 22 92 chr5 39536594 39536821 -113000438 + MIR SINE MIR 23 233 -29 5 886 405 0 0 0 chr5 39537882 39537927 -112999332 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 886 1673 251 51 8 chr5 39537929 39538318 -112998941 + MTD LTR MaLR 14 419 0 5 886 731 294 42 47 chr5 39538444 39538658 -112998601 - B3A SINE B2 0 216 4 5 886 274 175 20 49 chr5 39538937 39539039 -112998220 + CT-rich Low_complexity Low_complexity 2 100 0 5 886 558 310 57 42 chr5 39539088 39539280 -112997979 - B3A SINE B2 -1 197 3 6 886 254 466 32 5 chr5 39540111 39540301 -112996958 - LTR16A LTR ERVL -195 256 62 6 886 234 236 81 27 chr5 39540689 39540763 -112996496 - LTR16A LTR ERVL -395 85 8 6 886 493 364 47 54 chr5 39540943 39541239 -112996020 + ORR1E LTR MaLR 1 294 -65 6 886 1475 281 155 52 chr5 39541239 39541340 -112995919 + MTE-int LTR MaLR 361 451 -1129 6 886 1048 145 31 26 chr5 39541340 39541531 -112995728 + B2_Mm2 SINE B2 1 192 -3 6 886 1475 281 155 52 chr5 39541531 39542211 -112995048 + MTE-int LTR MaLR 452 1222 -358 6 886 189 213 113 16 chr5 39542512 39542574 -112994685 + MIR SINE MIR 7 74 -188 6 886 414 0 0 0 chr5 39543148 39543194 -112994065 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 886 435 19 0 0 chr5 39543194 39543245 -112994014 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 886 736 282 43 22 chr5 39546129 39546314 -112990945 + B3A SINE B2 8 196 -2 6 886 1191 56 0 0 chr5 39546352 39546494 -112990765 + B1_Mus1 SINE Alu 2 143 -5 6 886 318 384 57 38 chr5 39546587 39546798 -112990461 + MLT2E LTR ERVL 227 441 -187 7 886 339 25 0 0 chr5 39547388 39547428 -112989831 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 886 503 245 178 21 chr5 39547591 39547833 -112989426 - L1M3 LINE L1 -592 5699 5420 7 886 591 268 142 92 chr5 39547848 39548185 -112989074 - ORR1E LTR MaLR -5 354 1 7 886 1177 332 132 34 chr5 39548185 39548787 -112988472 - ORR1E-int LTR MaLR -53 1527 864 7 886 538 293 31 5 chr5 39548985 39549208 -112988051 - L1M3 LINE L1 -838 5302 5074 7 886 284 284 27 9 chr5 39550494 39550604 -112986655 + (CATATA)n Simple_repeat Simple_repeat 6 117 0 7 886 221 243 0 26 chr5 39550609 39550685 -112986574 + (CATA)n Simple_repeat Simple_repeat 1 74 0 7 886 325 190 62 25 chr5 39551343 39551424 -112985835 - PB1D7 SINE Alu -22 98 15 7 886 239 309 0 0 chr5 39553518 39553602 -112983657 + (CA)n Simple_repeat Simple_repeat 1 84 0 7 886 441 0 0 0 chr5 39554724 39554773 -112982486 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 886 389 296 47 20 chr5 39555111 39555259 -112982000 + RSINE1 SINE B4 2 153 -12 7 886 252 0 0 0 chr5 39555272 39555300 -112981959 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 886 227 331 16 16 chr5 39555691 39555814 -112981445 + L1M5 LINE L1 4562 4684 -1462 8 886 306 317 26 26 chr5 39555979 39556170 -112981089 + L1M5 LINE L1 4902 5092 -1054 8 886 189 241 148 49 chr5 39556473 39556534 -112980725 + L4 LINE RTE 1236 1302 -727 8 886 989 48 0 0 chr5 39557676 39557802 -112979457 - L1_Mus2 LINE L1 -402 6164 6039 8 886 2848 78 2 27 chr5 39557803 39558209 -112979050 + L1_Mus2 LINE L1 6171 6566 0 8 886 430 307 97 24 chr5 39559272 39559602 -112977657 - L1MA5 LINE L1 -38 6262 5909 8 886 642 60 0 0 chr5 39560040 39560123 -112977136 + (TC)n Simple_repeat Simple_repeat 1 83 0 8 886 549 0 0 0 chr5 39560123 39560183 -112977076 + (CA)n Simple_repeat Simple_repeat 1 61 0 8 886 191 354 43 22 chr5 39560679 39560835 -112976424 - MIRc SINE MIR -78 190 27 8 886 235 337 114 45 chr5 39561257 39561459 -112975800 - MLT1K LTR MaLR -49 546 331 8 886 21 0 0 0 chr5 39562130 39562151 -112975108 + AT_rich Low_complexity Low_complexity 1 21 0 8 886 203 343 234 17 chr5 39563133 39563492 -112973767 + L2c LINE L2 2910 3346 -41 9 886 327 320 87 48 chr5 39563875 39564082 -112973177 + MIRb SINE MIR 19 233 -35 9 886 187 295 76 13 chr5 39565013 39565092 -112972167 + MIRb SINE MIR 116 199 -69 9 886 219 36 0 0 chr5 39566155 39566183 -112971076 + (A)n Simple_repeat Simple_repeat 1 28 0 9 886 200 376 29 10 chr5 39567686 39567788 -112969471 + MIR SINE MIR 95 198 -64 9 886 27 29 0 0 chr5 39567908 39567942 -112969317 + AT_rich Low_complexity Low_complexity 1 34 0 9 886 1476 126 0 54 chr5 39567945 39568206 -112969053 - L1Md_F2 LINE L1 -12 6570 6324 9 886 562 242 8 70 chr5 39568485 39568614 -112968645 + RSINE1 SINE B4 3 123 -42 9 886 492 32 0 0 chr5 39568614 39568676 -112968583 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 886 1234 263 45 92 chr5 39570484 39571041 -112966218 - MT2A LTR ERVL 0 533 3 9 886 710 94 120 0 chr5 39571809 39571926 -112965333 + L1_Mus2 LINE L1 6436 6566 0 1 886 300 53 0 0 chr5 39571976 39572014 -112965245 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 1 886 243 0 0 0 chr5 39572877 39572904 -112964355 + (A)n Simple_repeat Simple_repeat 1 27 0 1 886 438 20 0 0 chr5 39573638 39573689 -112963570 + (TTA)n Simple_repeat Simple_repeat 3 53 0 1 886 243 0 0 0 chr5 39574313 39574340 -112962919 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 886 442 301 69 23 chr5 39574727 39574828 -112962431 - L1MA9 LINE L1 -42 6270 6157 1 886 417 39 0 0 chr5 39574828 39574879 -112962380 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 886 252 0 0 0 chr5 39574886 39574914 -112962345 + (CATA)n Simple_repeat Simple_repeat 1 28 0 1 886 442 301 69 23 chr5 39574914 39575107 -112962152 - L1MA9 LINE L1 -163 6149 5955 1 886 527 211 0 48 chr5 39575611 39575800 -112961459 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 886 599 252 8 8 chr5 39575852 39575980 -112961279 - RSINE1 SINE B4 -34 131 4 1 886 363 162 49 12 chr5 39575986 39576067 -112961192 - Lx7 LINE L1 -1954 5742 5659 1 886 877 241 10 20 chr5 39576067 39576270 -112960989 + MTE2a LTR MaLR 179 379 0 1 886 2704 313 126 17 chr5 39576270 39577378 -112959881 - MTEa-int LTR MaLR -322 1258 28 1 886 694 286 126 45 chr5 39577400 39577623 -112959636 - MTEa LTR MaLR -12 367 127 1 886 405 264 33 0 chr5 39577613 39577704 -112959555 - RSINE1 SINE B4 -21 144 51 1 886 376 331 21 7 chr5 39577696 39577836 -112959423 + MLT1A1 LTR MaLR 267 408 0 1 886 558 86 0 0 chr5 39579591 39579672 -112957587 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 886 742 326 108 9 chr5 39579731 39580183 -112957076 - Lx8 LINE L1 -7 7466 6970 1 886 1566 217 6 12 chr5 39580262 39580603 -112956656 - Lx6 LINE L1 -733 6727 6389 1 886 206 32 0 31 chr5 39580627 39580659 -112956600 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 1 886 184 377 49 5 chr5 39581368 39581552 -112955707 + L2 LINE L2 2286 2477 -942 1 886 204 67 0 0 chr5 39581592 39581622 -112955637 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 1 886 551 355 65 70 chr5 39581725 39582128 -112955131 + MLT1C LTR MaLR 1 401 -66 1 886 1929 219 39 13 chr5 39582239 39582706 -112954553 - Lx8 LINE L1 -5 7468 6990 1 110 37386 33 0 0 chr5 39582689 39588102 -112949157 - L1Md_T LINE L1 0 6582 1170 1 887 4311 148 28 35 chr5 39588108 39589022 -112948237 - L1Md_T LINE L1 -5411 1205 298 1 887 273 57 0 0 chr5 39589381 39589416 -112947843 + (TAAAA)n Simple_repeat Simple_repeat 4 38 0 1 887 207 100 0 0 chr5 39589570 39589600 -112947659 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1 887 717 341 44 34 chr5 39589878 39590285 -112946974 - L2 LINE L2 -648 2771 2361 1 887 6318 81 19 0 chr5 39590643 39591529 -112945730 - L1_Mus1 LINE L1 0 6567 5665 1 887 5417 92 0 1 chr5 39591522 39592299 -112944960 + L1_Mm LINE L1 4426 5201 -682 1 887 486 301 77 66 chr5 39592744 39592940 -112944319 - B3A SINE B2 0 198 1 1 887 315 71 0 0 chr5 39593238 39593280 -112943979 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 1 887 553 196 25 51 chr5 39593852 39593970 -112943289 - B1_Mus2 SINE Alu -24 123 9 1 887 428 341 16 93 chr5 39593874 39594068 -112943191 - ID_B1 SINE B4 -45 179 1 1 887 253 308 43 78 chr5 39594301 39594417 -112942842 + B1F SINE Alu 37 148 -1 1 887 243 0 0 0 chr5 39595233 39595260 -112941999 + (T)n Simple_repeat Simple_repeat 1 27 0 1 887 2442 54 193 0 chr5 39595891 39596223 -112941036 - MTA_Mm LTR MaLR 0 396 1 1 887 8376 69 8 1 chr5 39596223 39597313 -112939946 - MTA_Mm-int LTR MaLR 0 1098 1 1 887 3257 51 2 0 chr5 39597315 39597708 -112939551 - MTA_Mm LTR MaLR -2 394 1 1 887 298 339 44 50 chr5 39597813 39597993 -112939266 - MLT1B LTR MaLR -2 388 210 1 887 16323 80 25 3 chr5 39598176 39601129 -112936130 - L1VL4 LINE L1 -147 3412 395 1 887 7003 79 8 7 chr5 39601141 39602121 -112935138 - L1_Mus1 LINE L1 0 6567 5587 1 887 7292 99 3 4 chr5 39602120 39603206 -112934053 + L1_Mus1 LINE L1 4484 5568 -315 1 887 1136 169 0 0 chr5 39603200 39603384 -112933875 - L1VL4 LINE L1 -6102 200 17 1 887 513 0 0 0 chr5 39603537 39603594 -112933665 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 887 553 291 80 28 chr5 39604688 39604974 -112932285 - MER33 DNA MER1_type -22 302 2 1 887 228 35 0 0 chr5 39604999 39605028 -112932231 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 1 887 414 302 47 0 chr5 39606908 39607014 -112930245 - PB1D10 SINE Alu -4 113 3 1 887 255 378 27 0 chr5 39607039 39607150 -112930109 + MER44A DNA MER2_type 1 114 -225 1 887 243 217 0 0 chr5 39607161 39607221 -112930038 + GA-rich Low_complexity Low_complexity 1 60 0 1 887 1345 284 40 17 chr5 39607292 39607643 -112929616 + ORR1E LTR MaLR 1 359 0 1 887 1260 275 91 12 chr5 39607801 39608378 -112928881 + Lx7 LINE L1 5317 5972 -1672 1 887 504 48 0 0 chr5 39608404 39608467 -112928792 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 887 283 362 14 47 chr5 39608828 39608976 -112928283 - MIRb SINE MIR -123 145 3 1 887 655 239 112 63 chr5 39609155 39609500 -112927759 + MTD LTR MaLR 14 419 0 1 887 236 296 52 61 chr5 39609887 39610002 -112927257 + MLT1C LTR MaLR 4 117 -350 1 887 436 268 180 34 chr5 39610661 39610900 -112926359 + B4A SINE B4 9 282 -10 1 887 245 29 29 0 chr5 39610934 39610968 -112926291 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 887 377 228 12 12 chr5 39611589 39611669 -112925590 - B4 SINE B4 -8 284 205 1 887 528 16 0 0 chr5 39611711 39611772 -112925487 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 887 762 317 73 35 chr5 39613299 39613668 -112923591 + MLT1B LTR MaLR 4 386 -4 1 887 224 235 0 38 chr5 39614034 39614087 -112923172 - MIRm SINE MIR -140 136 86 1 887 525 350 30 52 chr5 39615277 39615509 -112921750 - B4A SINE B4 -39 253 27 1 887 3011 33 0 6 chr5 39616074 39616413 -112920846 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 887 57216 21 8 7 chr5 39616413 39622876 -112914383 - IAPEz-int LTR ERVK 0 6481 8 1 887 3000 36 0 6 chr5 39622876 39623215 -112914044 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 887 1773 292 19 26 chr5 39623215 39623743 -112913516 + Lx7 LINE L1 6575 7098 -598 1 887 640 273 90 10 chr5 39625481 39625681 -112911578 - Lx6 LINE L1 -198 7262 7047 1 887 410 216 72 20 chr5 39625681 39625820 -112911439 + Lx5 LINE L1 6495 6681 -377 1 887 877 204 48 10 chr5 39626412 39626620 -112910639 - L1MA9 LINE L1 0 6312 6097 1 887 432 0 0 0 chr5 39627582 39627630 -112909629 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 887 863 329 20 4 chr5 39627658 39627911 -112909348 - B4 SINE B4 -3 289 33 1 887 4477 148 113 21 chr5 39630435 39631249 -112906010 + RMER19B LTR ERVK 2 890 -12 1 887 536 250 71 16 chr5 39631406 39631532 -112905727 + RMER1B Other Other 7 139 -927 1 887 413 301 26 0 chr5 39631535 39631641 -112905618 + RMER1A Other Other 17 102 -928 1 887 1187 305 142 40 chr5 39631619 39632388 -112904871 + RMER1A Other Other 72 797 -233 1 887 3093 76 10 0 chr5 39632378 39632773 -112904486 + L1_Mus1 LINE L1 5813 6211 -356 1 887 28393 142 25 36 chr5 39632771 39638246 -112899013 - L1Md_F LINE L1 -408 5475 217 1 887 620 102 10 0 chr5 39638398 39638496 -112898763 + (TC)n Simple_repeat Simple_repeat 2 100 0 1 887 270 171 43 0 chr5 39638501 39638571 -112898688 + (TCTCTG)n Simple_repeat Simple_repeat 1 73 0 1 887 207 232 0 0 chr5 39640030 39640086 -112897173 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 1 887 1596 162 21 100 chr5 39640123 39640595 -112896664 + RMER17C LTR ERVK 16 439 -519 1 887 468 106 0 0 chr5 39642263 39642348 -112894911 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 887 285 182 11 74 chr5 39642540 39642635 -112894624 + Lx4B LINE L1 6963 7051 -7 1 887 491 285 22 30 chr5 39642859 39642993 -112894266 + RSINE1 SINE B4 11 143 -22 1 887 397 297 43 25 chr5 39643164 39643326 -112893933 - L1MB4 LINE L1 -1 6179 6015 1 887 237 203 12 48 chr5 39643570 39643653 -112893606 + GA-rich Low_complexity Low_complexity 1 80 0 1 887 239 114 23 0 chr5 39644546 39644590 -112892669 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1 887 602 322 42 42 chr5 39644590 39644804 -112892455 - ID_B1 SINE B4 -8 216 3 1 887 288 130 0 0 chr5 39644893 39644939 -112892320 + (T)n Simple_repeat Simple_repeat 1 46 0 1 887 257 0 30 0 chr5 39645627 39645660 -112891599 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 1 887 1146 162 37 32 chr5 39645696 39645913 -112891346 - MTC LTR MaLR -203 218 1 1 887 1785 179 83 25 chr5 39645916 39646323 -112890936 - MTC-int LTR MaLR -3 1255 825 1 887 1031 166 286 11 chr5 39646319 39646576 -112890683 - MTC LTR MaLR -33 388 61 1 887 23 0 0 0 chr5 39647115 39647138 -112890121 + AT_rich Low_complexity Low_complexity 1 23 0 1 887 453 19 0 0 chr5 39647295 39647349 -112889910 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 887 228 35 0 0 chr5 39648239 39648268 -112888991 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 887 1963 86 4 0 chr5 39649424 39649693 -112887566 - L1_Mus3 LINE L1 -659 5979 5710 1 887 4414 99 48 2 chr5 39649699 39650307 -112886952 + L1_Mus3 LINE L1 5993 6628 -10 1 887 253 118 19 19 chr5 39650308 39650360 -112886899 + (TAA)n Simple_repeat Simple_repeat 1 52 0 1 887 251 276 0 0 chr5 39650806 39650882 -112886377 + Lx5 LINE L1 6972 7047 -3 1 887 272 311 0 0 chr5 39650963 39651024 -112886235 + tRNA-Ala-GCY_ tRNA tRNA 3 63 -12 1 887 465 103 0 0 chr5 39651053 39651121 -112886138 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 1 887 269 338 51 36 chr5 39651206 39651344 -112885915 - MIRb SINE MIR -14 254 115 1 887 228 386 0 33 chr5 39651448 39651539 -112885720 + L3 LINE CR1 4326 4413 -76 1 887 24 32 0 0 chr5 39651786 39651817 -112885442 + AT_rich Low_complexity Low_complexity 1 31 0 1 887 378 0 0 0 chr5 39651917 39651959 -112885300 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 887 745 322 89 11 chr5 39652600 39652961 -112884298 - MLT1A1 LTR MaLR -14 394 6 1 887 315 0 0 0 chr5 39653291 39653326 -112883933 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 887 377 366 0 23 chr5 39653353 39653529 -112883730 - Lx9 LINE L1 -277 7367 7196 1 887 799 288 16 144 chr5 39653914 39654344 -112882915 - MTE2a LTR MaLR 0 379 5 1 887 789 312 44 112 chr5 39655033 39655444 -112881815 + MTC LTR MaLR 20 402 -19 1 887 287 232 29 0 chr5 39655460 39655529 -112881730 + MLT1E1A LTR MaLR 174 244 -436 2 887 312 172 0 0 chr5 39655683 39655741 -112881518 + GA-rich Low_complexity Low_complexity 3 60 0 2 887 1142 112 6 0 chr5 39655748 39655926 -112881333 + (GAA)n Simple_repeat Simple_repeat 1 179 0 2 887 208 245 20 0 chr5 39656146 39656195 -112881064 + CT-rich Low_complexity Low_complexity 1 50 0 2 887 414 316 129 82 chr5 39657290 39657593 -112879666 - ORR1E LTR MaLR -4 355 39 2 887 379 316 0 0 chr5 39657703 39657801 -112879458 - MTE-int LTR MaLR -34 1546 1449 2 887 487 311 198 9 chr5 39657815 39658042 -112879217 - MTE-int LTR MaLR -249 1331 1062 2 887 1033 317 38 15 chr5 39658051 39658394 -112878865 + ORR1E LTR MaLR 1 351 -8 2 887 697 293 73 21 chr5 39658415 39658649 -112878610 + ORR1E-int LTR MaLR 18 263 -1317 2 887 909 326 124 14 chr5 39658978 39659342 -112877917 - MTC LTR MaLR 0 421 18 2 887 1049 268 45 118 chr5 39659370 39659751 -112877508 - ORR1E LTR MaLR -6 353 1 2 887 358 324 13 20 chr5 39659751 39659902 -112877357 + L1MA10 LINE L1 6158 6307 -27 2 887 4391 151 9 213 chr5 39660962 39661517 -112875742 + L1_Mur1 LINE L1 2234 2781 -3105 2 887 1205 81 0 18 chr5 39661517 39661680 -112875579 + L1_Mus1 LINE L1 6408 6567 0 2 887 4391 151 9 213 chr5 39661680 39661833 -112875426 + L1_Mur1 LINE L1 2782 2798 -3088 2 887 1166 106 0 11 chr5 39661833 39662015 -112875244 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 887 4391 151 9 213 chr5 39662015 39662578 -112874681 + L1_Mur1 LINE L1 2799 3246 -2640 2 887 1059 101 62 12 chr5 39662579 39662740 -112874519 + MTB LTR MaLR 232 400 0 2 887 423 0 0 0 chr5 39662875 39662922 -112874337 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 887 683 268 23 73 chr5 39662922 39663099 -112874160 - B3 SINE B2 -30 186 19 2 887 863 252 14 76 chr5 39663462 39663518 -112873741 - B3 SINE B2 -6 210 166 2 887 477 0 0 0 chr5 39663518 39663571 -112873688 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 887 863 252 14 76 chr5 39663571 39663737 -112873522 - B3 SINE B2 -51 165 2 2 887 488 16 0 16 chr5 39664260 39664322 -112872937 + (TAA)n Simple_repeat Simple_repeat 2 62 0 2 887 415 320 6 119 chr5 39665393 39665570 -112871689 + RSINE1 SINE B4 9 165 0 2 887 1080 101 0 0 chr5 39665571 39665749 -112871510 + (GA)n Simple_repeat Simple_repeat 2 179 0 2 887 722 332 14 5 chr5 39665837 39666052 -112871207 + ID_B1 SINE B4 1 217 -7 2 887 234 0 0 0 chr5 39666054 39666080 -112871179 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 887 242 339 35 9 chr5 39666259 39666375 -112870884 + MLT1F1 LTR MaLR 371 489 -80 2 887 342 0 0 0 chr5 39666409 39666447 -112870812 + (CAAT)n Simple_repeat Simple_repeat 3 40 0 2 887 274 401 0 0 chr5 39666846 39666988 -112870271 + (TG)n Simple_repeat Simple_repeat 1 142 0 2 887 265 369 65 77 chr5 39667251 39667512 -112869747 - LTR16E1 LTR ERVL -40 498 241 2 887 21 0 0 0 chr5 39667852 39667873 -112869386 + AT_rich Low_complexity Low_complexity 1 21 0 2 887 548 153 0 51 chr5 39667873 39668011 -112869248 - L1Md_F2 LINE L1 0 6582 6452 2 887 315 0 0 0 chr5 39668048 39668083 -112869176 + (CTAA)n Simple_repeat Simple_repeat 2 36 0 2 887 191 36 36 0 chr5 39668298 39668326 -112868933 + (TATAA)n Simple_repeat Simple_repeat 4 32 0 2 887 393 22 0 0 chr5 39668503 39668549 -112868710 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 887 764 262 84 14 chr5 39668705 39668918 -112868341 + MTD LTR MaLR 1 228 -191 2 887 221 182 18 0 chr5 39668925 39668980 -112868279 + (CAA)n Simple_repeat Simple_repeat 2 57 0 2 887 386 283 92 6 chr5 39668987 39669161 -112868098 + MTD LTR MaLR 231 419 0 2 887 2274 261 117 74 chr5 39669161 39670367 -112866892 + MTD-int LTR MaLR 1 1258 0 2 887 279 279 0 0 chr5 39670419 39670480 -112866779 - MTE2b LTR MaLR -309 70 10 2 887 259 306 9 9 chr5 39670783 39670895 -112866364 + (TA)n Simple_repeat Simple_repeat 2 113 0 2 887 260 298 152 18 chr5 39671029 39671200 -112866059 - MLT1C LTR MaLR -128 339 146 2 887 536 231 6 0 chr5 39671342 39671498 -112865761 + (TA)n Simple_repeat Simple_repeat 1 157 0 2 887 240 320 107 20 chr5 39672685 39672835 -112864424 + MER68 LTR ERVL 126 288 -275 2 887 1595 312 58 48 chr5 39673086 39673979 -112863280 - Lx8 LINE L1 -4 7469 6568 2 887 399 275 90 62 chr5 39673983 39674227 -112863032 - Lx8 LINE L1 -1104 6369 6119 2 887 185 0 40 0 chr5 39674232 39674257 -112863002 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 887 330 301 72 14 chr5 39674454 39674592 -112862667 - Lx8 LINE L1 -1104 6369 6224 2 887 1279 275 40 4 chr5 39674591 39675160 -112862099 - Lx8 LINE L1 -1796 5900 5313 2 887 348 163 10 89 chr5 39675204 39675305 -112861954 - Lx9 LINE L1 0 7644 7552 2 887 185 0 40 0 chr5 39675321 39675346 -112861913 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 887 312 186 14 0 chr5 39675346 39675416 -112861843 - Lx9 LINE L1 -207 7437 7367 2 887 2048 289 38 54 chr5 39675509 39676695 -112860564 - L1_Mur3 LINE L1 -3129 2751 1585 2 887 531 330 57 46 chr5 39678157 39678828 -112858431 - L1MA4 LINE L1 -259 6038 5360 2 887 486 0 0 0 chr5 39678912 39678966 -112858293 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 887 1124 301 88 41 chr5 39679132 39679161 -112858098 - L1MA4 LINE L1 -931 5212 5190 2 887 513 234 222 5 chr5 39679161 39679346 -112857913 - URR1B DNA MER1_type 0 225 1 2 887 1124 301 88 41 chr5 39679346 39680324 -112856935 - L1MA4 LINE L1 -954 5189 4157 2 887 1010 330 41 72 chr5 39680457 39680973 -112856286 - RMER5 LTR ERV1 -2 532 33 2 887 321 274 16 64 chr5 39681076 39681201 -112856058 + Tigger5 DNA MER2_type 2265 2383 -23 2 887 672 347 83 15 chr5 39681952 39682291 -112854968 - MLT1C LTR MaLR -72 395 34 2 887 214 295 123 65 chr5 39682407 39682545 -112854714 + MIR SINE MIR 83 228 -34 2 887 588 288 128 24 chr5 39683220 39683486 -112853773 + MLT1E2 LTR MaLR 83 352 -275 2 887 1252 72 0 16 chr5 39685335 39685518 -112851741 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 887 4802 108 8 0 chr5 39685557 39686224 -112851035 + Lx2 LINE L1 6324 6995 -2 2 887 663 233 3 23 chr5 39686246 39686445 -112850814 + MTD LTR MaLR 8 204 -203 2 887 3107 14 0 0 chr5 39686445 39686815 -112850444 + L1Md_T LINE L1 5217 5586 -297 2 887 8202 49 0 0 chr5 39686815 39687811 -112849448 + L1Md_T LINE L1 5587 6582 0 2 887 339 62 0 0 chr5 39687811 39687859 -112849400 + L1Md_A LINE L1 1133 1180 -5544 2 887 783 241 58 10 chr5 39687859 39688064 -112849195 + MTD LTR MaLR 196 410 -9 2 887 258 276 22 33 chr5 39689485 39689575 -112847684 + MIR SINE MIR 133 221 -41 2 887 449 308 13 27 chr5 39689582 39689732 -112847527 + MER5A DNA MER1_type 21 168 -21 2 887 291 310 103 6 chr5 39689929 39690085 -112847174 - L1M5 LINE L1 -701 5539 5369 2 887 53 17 0 0 chr5 39690543 39690603 -112846656 + AT_rich Low_complexity Low_complexity 1 60 0 2 887 486 33 0 0 chr5 39691248 39691308 -112845951 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 887 1073 281 98 18 chr5 39691456 39691844 -112845415 - MTD LTR MaLR 0 419 1 2 887 325 395 7 0 chr5 39692018 39692165 -112845094 - MIR SINE MIR -108 154 7 2 887 22 70 0 0 chr5 39692315 39692358 -112844901 + AT_rich Low_complexity Low_complexity 1 43 0 2 887 3060 219 55 24 chr5 39692360 39693066 -112844193 + RMER1B Other Other 334 1061 -5 2 887 558 305 86 6 chr5 39693209 39693384 -112843875 - B3A SINE B2 -1 197 9 2 887 433 235 117 36 chr5 39693909 39694046 -112843213 + B1_Mur2 SINE Alu 2 149 0 2 887 357 285 77 42 chr5 39694122 39694265 -112842994 + MLT1A0 LTR MaLR 218 365 0 2 887 240 250 0 54 chr5 39694445 39694538 -112842721 + T-rich Low_complexity Low_complexity 5 92 0 2 887 241 336 108 8 chr5 39695795 39695915 -112841344 - MIRc SINE MIR -111 157 26 2 887 286 321 102 18 chr5 39696913 39697068 -112840191 - MIRb SINE MIR -83 185 16 2 887 689 294 102 30 chr5 39698561 39698894 -112838365 + ORR1E LTR MaLR 1 357 -2 2 887 944 273 49 112 chr5 39699575 39700004 -112837255 + MTE2a LTR MaLR 3 419 0 2 887 370 234 82 27 chr5 39700789 39700899 -112836360 - MER63B DNA AcHobo -3 433 318 2 887 308 284 80 27 chr5 39701689 39701801 -112835458 + MLT1L LTR MaLR 139 256 -354 2 887 436 244 43 64 chr5 39701803 39701991 -112835268 + Lx8 LINE L1 7244 7427 -46 2 887 396 0 0 0 chr5 39702016 39702060 -112835199 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 887 300 429 0 0 chr5 39702489 39702666 -112834593 + (CGTG)n Simple_repeat Simple_repeat 3 179 0 2 887 331 375 23 0 chr5 39702638 39702884 -112834375 + (CATG)n Simple_repeat Simple_repeat 1 251 0 2 887 612 0 0 0 chr5 39702991 39703059 -112834200 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 887 804 261 46 5 chr5 39703365 39703561 -112833698 - B3 SINE B2 -6 210 7 2 887 603 310 94 67 chr5 39703571 39704121 -112833138 + L1ME2 LINE L1 4537 5101 -1045 2 887 336 312 78 45 chr5 39704166 39704624 -112832635 + L1ME2 LINE L1 5232 5714 -465 2 887 4581 54 26 0 chr5 39704644 39705247 -112832012 - L1Md_F2 LINE L1 0 5883 5265 2 887 5399 78 0 4 chr5 39705247 39705967 -112831292 + L1Md_F2 LINE L1 5866 6582 0 2 887 295 270 56 42 chr5 39706025 39706238 -112831021 + L1ME2 LINE L1 5770 5985 -179 2 887 228 320 112 10 chr5 39707128 39707226 -112830033 - MLT1A1 LTR MaLR -8 400 293 2 887 186 311 0 0 chr5 39708219 39708273 -112828986 - MIRb SINE MIR -3 273 214 2 887 487 307 5 114 chr5 39708528 39708730 -112828529 - B3A SINE B2 -16 182 3 2 887 180 0 0 0 chr5 39709588 39709608 -112827651 + (T)n Simple_repeat Simple_repeat 1 20 0 2 887 197 224 17 0 chr5 39711294 39711352 -112825907 + GA-rich Low_complexity Low_complexity 2 60 0 2 887 1130 75 0 7 chr5 39711562 39711710 -112825549 - B1_Mus2 SINE Alu 0 147 1 2 887 534 297 12 25 chr5 39711752 39711914 -112825345 - RSINE1 SINE B4 -4 161 2 2 887 254 257 129 0 chr5 39712970 39713040 -112824219 - ID4 SINE ID -3 80 2 2 887 519 101 0 0 chr5 39713659 39713738 -112823521 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 887 731 107 91 0 chr5 39714523 39714644 -112822615 + BGLII_B LTR ERVK 307 438 -3 2 110 310 343 56 35 chr5 39714701 39714843 -112822416 - B1F SINE Alu 0 149 5 2 888 218 362 57 44 chr5 39716197 39716356 -112820903 + L2b LINE L2 3000 3160 -215 2 888 252 300 59 10 chr5 39719726 39719827 -112817432 - MamRep605 Unknown Unknown -752 124 19 2 888 335 345 66 6 chr5 39720485 39720651 -112816608 + LTR33 LTR ERVL 321 496 -19 2 888 1537 262 74 10 chr5 39720825 39721219 -112816040 + MTD LTR MaLR 1 419 0 2 888 306 148 0 0 chr5 39721310 39721364 -112815895 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 888 474 18 0 0 chr5 39721364 39721419 -112815840 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 888 193 254 62 31 chr5 39722190 39722255 -112815004 + MIRm SINE MIR 92 158 -118 3 888 727 333 25 72 chr5 39722644 39722922 -112814337 - B4A SINE B4 -4 288 24 3 888 1684 100 0 0 chr5 39723896 39724127 -112813132 + L1_Mus1 LINE L1 6336 6566 -1 3 888 342 52 0 0 chr5 39724128 39724186 -112813073 + MusHAL1 LINE L1 2655 2712 0 3 888 201 74 0 0 chr5 39724811 39724838 -112812421 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3 888 327 339 23 0 chr5 39724868 39724998 -112812261 - MER45C DNA Tip100 -7 946 814 3 888 307 340 36 122 chr5 39725468 39725689 -112811570 + MLT1K LTR MaLR 233 434 -161 3 888 356 288 97 58 chr5 39726322 39726477 -112810782 - RMER30 DNA MER1_type -20 182 22 3 888 4922 100 8 3 chr5 39726744 39727448 -112809811 + Lx LINE L1 5940 6647 -7 3 888 372 353 65 42 chr5 39731695 39732003 -112805256 + L2b LINE L2 2923 3237 -138 3 888 270 363 29 0 chr5 39732749 39732851 -112804408 + MIRc SINE MIR 46 150 -118 3 888 461 300 127 57 chr5 39733059 39733391 -112803868 - MLT1C LTR MaLR -6 461 107 3 888 577 305 42 32 chr5 39733993 39734210 -112803049 - RMER15 LTR ERVL -45 530 312 3 888 300 53 0 0 chr5 39736003 39736041 -112801218 + (CCA)n Simple_repeat Simple_repeat 3 40 0 3 888 248 132 0 0 chr5 39736375 39736413 -112800846 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 888 384 190 0 0 chr5 39736413 39736492 -112800767 + (TA)n Simple_repeat Simple_repeat 1 79 0 3 888 347 231 63 27 chr5 39736516 39736627 -112800632 + HAL1-3A_ME LINE L1 1975 2089 -769 3 888 270 256 24 12 chr5 39736711 39736794 -112800465 + CT-rich Low_complexity Low_complexity 6 89 0 3 888 245 270 11 27 chr5 39736868 39737051 -112800208 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 888 373 269 6 11 chr5 39737014 39737191 -112800068 + (CATA)n Simple_repeat Simple_repeat 4 179 0 3 888 400 260 6 11 chr5 39737168 39737347 -112799912 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 3 888 366 326 7 0 chr5 39737359 39737494 -112799765 + (CATATA)n Simple_repeat Simple_repeat 3 138 0 3 888 210 329 13 0 chr5 39737723 39737802 -112799457 + GA-rich Low_complexity Low_complexity 3 82 0 3 888 591 246 197 0 chr5 39737960 39738163 -112799096 + 7SK RNA RNA 18 260 -71 3 888 236 203 29 0 chr5 39738846 39738915 -112798344 + GA-rich Low_complexity Low_complexity 3 73 0 3 888 206 194 15 0 chr5 39741201 39741268 -112795991 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 888 258 354 113 27 chr5 39741506 39741692 -112795567 + LTR16B1 LTR ERVL 10 211 -269 3 888 246 81 0 0 chr5 39742102 39742139 -112795120 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 888 701 108 48 0 chr5 39742140 39742307 -112794952 + (CAGA)n Simple_repeat Simple_repeat 2 176 0 3 888 401 343 116 65 chr5 39742573 39743063 -112794196 - LTR55 LTR ERV -11 537 23 3 888 183 370 0 12 chr5 39744042 39744124 -112793135 + MIRm SINE MIR 73 153 -123 3 888 290 261 41 25 chr5 39745164 39745200 -112792059 + L1M3 LINE L1 5439 5478 -690 3 888 5366 160 37 30 chr5 39745200 39746216 -112791043 + Lx2 LINE L1 5973 6996 -1 3 888 290 261 41 25 chr5 39746216 39746301 -112790958 + L1M3 LINE L1 5479 5562 -606 3 888 23 68 0 0 chr5 39747195 39747239 -112790020 + AT_rich Low_complexity Low_complexity 1 44 0 3 888 2843 156 43 8 chr5 39747312 39747822 -112789437 - RLTR11A LTR ERVK 0 528 1 3 888 180 245 0 0 chr5 39747879 39747932 -112789327 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 888 526 313 70 50 chr5 39747938 39748180 -112789079 - B4A SINE B4 0 292 46 3 888 23 54 0 0 chr5 39748371 39748408 -112788851 + AT_rich Low_complexity Low_complexity 1 37 0 3 888 1073 251 135 12 chr5 39748583 39748917 -112788342 + MTD LTR MaLR 45 419 0 3 888 291 71 0 0 chr5 39748998 39749040 -112788219 + (TAAAA)n Simple_repeat Simple_repeat 4 45 0 3 888 22 0 0 0 chr5 39749334 39749356 -112787903 + AT_rich Low_complexity Low_complexity 1 22 0 3 888 1084 239 156 12 chr5 39749365 39749691 -112787568 + ORR1D1 LTR MaLR 1 373 -1 3 888 25 51 0 0 chr5 39750104 39750143 -112787116 + AT_rich Low_complexity Low_complexity 1 39 0 3 888 663 220 15 22 chr5 39750797 39750932 -112786327 - ID_B1 SINE B4 -2 222 89 3 888 468 0 0 0 chr5 39751038 39751090 -112786169 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 888 408 143 0 0 chr5 39751090 39751160 -112786099 + (GAAA)n Simple_repeat Simple_repeat 2 71 0 3 888 450 0 0 0 chr5 39751340 39751390 -112785869 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 888 210 143 0 0 chr5 39753465 39753500 -112783759 + (CAG)n Simple_repeat Simple_repeat 1 35 0 3 888 183 247 85 46 chr5 39754120 39754211 -112783048 + MIR SINE MIR 108 206 -62 3 888 595 338 16 40 chr5 39754967 39755214 -112782045 - B4A SINE B4 -49 243 3 3 888 329 266 35 44 chr5 39755769 39755883 -112781376 + MER89 LTR ERV1 415 527 -32 3 888 333 313 305 53 chr5 39756474 39756720 -112780539 - ORR1E LTR MaLR -23 356 49 3 888 2813 43 26 0 chr5 39756797 39757144 -112780115 + L1Md_F3 LINE L1 6214 6569 -15 3 888 336 348 52 42 chr5 39758237 39758525 -112778734 - B4A SINE B4 -1 291 1 3 888 549 0 0 0 chr5 39758787 39758848 -112778411 + (TC)n Simple_repeat Simple_repeat 1 61 0 3 888 450 0 0 0 chr5 39758853 39758903 -112778356 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 888 3010 157 41 20 chr5 39758908 39759449 -112777810 - Lx LINE L1 -17 6637 6086 3 888 616 383 47 28 chr5 39760351 39760815 -112776444 + MLT1G LTR MaLR 71 591 -4 3 888 240 35 0 0 chr5 39760898 39760927 -112776332 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3 888 184 330 54 54 chr5 39760945 39761057 -112776202 + L2c LINE L2 3274 3385 -2 3 888 381 22 0 0 chr5 39761307 39761353 -112775906 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 3 888 6859 38 5 12 chr5 39761693 39762548 -112774711 + L1Md_F3 LINE L1 5734 6582 -2 3 888 4568 68 126 8 chr5 39763427 39764069 -112773190 + L1Md_F2 LINE L1 5853 6570 -12 3 888 708 188 273 0 chr5 39765219 39765395 -112771864 + URR1B DNA MER1_type 2 225 0 3 888 463 313 66 84 chr5 39766323 39766536 -112770723 - MTE2a LTR MaLR -57 322 114 3 888 315 0 0 0 chr5 39767447 39767482 -112769777 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 888 332 94 19 0 chr5 39767485 39767538 -112769721 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 888 195 125 0 0 chr5 39767645 39767685 -112769574 + (TTTTTG)n Simple_repeat Simple_repeat 4 43 0 3 888 1216 48 0 0 chr5 39767685 39767832 -112769427 - B1_Mm SINE Alu 0 147 1 3 888 342 67 0 0 chr5 39769302 39769347 -112767912 + (TCC)n Simple_repeat Simple_repeat 3 47 0 3 888 957 161 11 39 chr5 39769347 39769528 -112767731 - ORR1A4 LTR MaLR -61 268 93 3 888 334 164 0 0 chr5 39769543 39769598 -112767661 + 4.5SRNA scRNA scRNA 23 77 -17 3 888 661 169 15 0 chr5 39770830 39770966 -112766293 + (TA)n Simple_repeat Simple_repeat 1 138 0 3 888 269 241 11 0 chr5 39770983 39771070 -112766189 - Lx5 LINE L1 -14 7036 6949 3 888 523 271 46 9 chr5 39771066 39771282 -112765977 - Lx9 LINE L1 -9 7635 7412 3 888 255 31 0 0 chr5 39772101 39772133 -112765126 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 888 612 40 0 0 chr5 39772938 39773013 -112764246 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 888 304 296 141 10 chr5 39773028 39773127 -112764132 - RSINE1 SINE B4 -19 146 35 3 888 215 306 35 12 chr5 39773770 39773856 -112763403 + MIRc SINE MIR 46 133 -135 3 888 180 0 0 0 chr5 39774053 39774073 -112763186 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 888 438 309 14 14 chr5 39775357 39775498 -112761761 - B4A SINE B4 -8 284 144 3 888 187 329 82 0 chr5 39775758 39775831 -112761428 + L2a LINE L2 3345 3423 -3 3 888 21 0 0 0 chr5 39776135 39776156 -112761103 + AT_rich Low_complexity Low_complexity 1 21 0 3 888 686 196 26 7 chr5 39776162 39776316 -112760943 - Lx3B LINE L1 -4 6969 6813 3 888 287 288 35 113 chr5 39776800 39776941 -112760318 - MLT1A0 LTR MaLR -50 315 186 3 888 266 233 13 27 chr5 39776966 39777041 -112760218 + GA-rich Low_complexity Low_complexity 1 74 0 3 888 355 140 0 0 chr5 39777557 39777614 -112759645 - L1_Mm LINE L1 -2463 3420 3364 3 888 10284 61 2 1 chr5 39777622 39778993 -112758266 + L1_Mm LINE L1 4426 5797 -86 3 888 5986 68 9 4 chr5 39779711 39780509 -112756750 + L1Md_F2 LINE L1 5783 6582 0 3 888 844 52 0 57 chr5 39780532 39780655 -112756604 - L1_Mus1 LINE L1 -164 6403 6288 3 888 381 149 0 0 chr5 39780659 39780726 -112756533 + (A)n Simple_repeat Simple_repeat 1 67 0 3 888 205 333 0 0 chr5 39780941 39780998 -112756261 + MIRb SINE MIR 109 165 -103 3 888 456 51 0 0 chr5 39782218 39782277 -112754982 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 888 432 0 0 0 chr5 39782277 39782324 -112754935 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 888 418 252 84 0 chr5 39784026 39784133 -112753126 - Lx7 LINE L1 -969 6727 6612 3 888 1447 254 42 14 chr5 39784129 39784681 -112752578 - L1_Mur3 LINE L1 -4073 1807 1241 3 888 3786 77 0 0 chr5 39784682 39785163 -112752096 - L1_Mus1 LINE L1 -1 6566 6086 3 888 4475 62 19 1 chr5 39785163 39785909 -112751350 + L1_Mus1 LINE L1 5279 6038 -528 3 888 296 42 62 0 chr5 39785918 39785966 -112751293 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 3 888 435 262 81 28 chr5 39785988 39786235 -112751024 - L1_Mur3 LINE L1 -6483 1245 986 3 888 2338 189 34 12 chr5 39786277 39786689 -112750570 + MTC LTR MaLR 1 421 0 3 888 203 108 71 71 chr5 39787283 39787353 -112749906 + (TTTAA)n Simple_repeat Simple_repeat 1 70 0 4 888 32 57 0 0 chr5 39787483 39787536 -112749723 + AT_rich Low_complexity Low_complexity 1 53 0 4 888 180 0 0 0 chr5 39788329 39788349 -112748910 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 4 888 231 61 0 0 chr5 39788767 39788800 -112748459 + (CAA)n Simple_repeat Simple_repeat 1 33 0 4 888 366 80 0 0 chr5 39789893 39789943 -112747316 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 888 276 355 51 17 chr5 39790013 39790188 -112747071 + MIR SINE MIR 15 195 -67 4 888 515 274 88 11 chr5 39790333 39790421 -112746838 + MLT1B LTR MaLR 3 100 -290 4 888 1803 186 187 98 chr5 39790421 39790982 -112746277 + RMER19C LTR ERVK 1 611 0 4 888 515 292 90 28 chr5 39790982 39791120 -112746139 + MLT1B LTR MaLR 101 235 -232 4 888 451 342 83 37 chr5 39791816 39792165 -112745094 - L1M5 LINE L1 -743 5403 5039 4 888 324 48 0 0 chr5 39792178 39792220 -112745039 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 4 888 596 326 83 3 chr5 39794038 39794462 -112742797 - L1MC1 LINE L1 -66 6278 5818 4 888 288 91 0 0 chr5 39794493 39794537 -112742722 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 888 1026 161 5 55 chr5 39794550 39794767 -112742492 - L1Md_F2 LINE L1 -2 6580 6375 4 888 25 0 0 0 chr5 39795069 39795094 -112742165 + AT_rich Low_complexity Low_complexity 1 25 0 4 888 600 136 11 54 chr5 39795475 39795661 -112741598 + CT-rich Low_complexity Low_complexity 3 180 0 4 888 238 384 31 74 chr5 39795856 39796019 -112741240 - LTR33A_ LTR ERVL -260 271 116 4 888 1026 60 0 0 chr5 39797271 39797405 -112739854 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 4 888 265 305 186 0 chr5 39797432 39797599 -112739660 + Lx8 LINE L1 6975 7172 -301 4 888 509 296 38 38 chr5 39797880 39798018 -112739241 + RSINE1 SINE B4 5 142 -23 4 888 201 39 0 0 chr5 39798018 39798044 -112739215 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 888 509 296 38 38 chr5 39798044 39798063 -112739196 + RSINE1 SINE B4 143 161 -4 4 888 228 209 160 32 chr5 39798576 39798670 -112738589 + MIR SINE MIR 154 259 -3 4 888 322 281 65 5 chr5 39798946 39799132 -112738127 - L1MA6 LINE L1 -3 6297 6101 4 888 261 0 0 0 chr5 39799174 39799203 -112738056 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 888 355 277 34 0 chr5 39799952 39800100 -112737159 + L1M5 LINE L1 3599 3751 -2395 4 888 249 260 46 46 chr5 39800398 39800507 -112736752 + L1M5 LINE L1 4040 4148 -1998 4 888 891 296 41 43 chr5 39800728 39801444 -112735815 + RMER1A Other Other 75 837 -505 4 888 881 163 104 140 chr5 39801452 39801673 -112735586 + ORR1B1 LTR MaLR 41 253 -141 4 888 704 193 47 0 chr5 39801657 39801807 -112735452 - ORR1A4-int LTR MaLR -1804 159 3 4 888 1340 159 146 38 chr5 39801813 39802101 -112735158 - ORR1A4 LTR MaLR -8 321 3 4 888 450 172 11 0 chr5 39802110 39802197 -112735062 + RMER1B Other Other 527 614 -452 4 888 1980 218 88 26 chr5 39802211 39802287 -112734972 - RLTR20B2 LTR ERVK -11 566 486 4 888 414 0 0 0 chr5 39802287 39802333 -112734926 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 888 2156 178 30 38 chr5 39802333 39802789 -112734470 - RLTR20B2 LTR ERVK -92 485 1 4 888 870 183 424 42 chr5 39802790 39803014 -112734245 + RMER1B Other Other 617 951 -115 4 888 186 43 0 0 chr5 39803014 39803037 -112734222 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 4 888 870 145 209 71 chr5 39803037 39803155 -112734104 + RMER1B Other Other 952 1061 -5 4 888 1217 48 0 0 chr5 39803368 39803514 -112733745 - B1_Mm SINE Alu 0 147 2 4 888 668 280 68 62 chr5 39803594 39803902 -112733357 + MTEa LTR MaLR 3 312 -67 4 888 282 29 0 0 chr5 39803927 39803962 -112733297 + (T)n Simple_repeat Simple_repeat 1 35 0 4 888 330 341 15 15 chr5 39804215 39804346 -112732913 - ORR1E LTR MaLR -188 171 41 4 888 205 400 20 14 chr5 39804881 39805028 -112732231 - MIR SINE MIR -104 158 11 4 888 183 0 50 75 chr5 39805388 39805428 -112731831 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 888 1028 59 0 7 chr5 39805428 39805559 -112731700 - B1_Mus1 SINE Alu -9 139 9 4 888 417 209 0 193 chr5 39805454 39805620 -112731639 - MT2B LTR ERVL -337 264 131 4 888 195 42 0 0 chr5 39806305 39806329 -112730930 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 888 21 0 0 0 chr5 39806332 39806353 -112730906 + AT_rich Low_complexity Low_complexity 1 21 0 4 888 2294 279 79 40 chr5 39806551 39807385 -112729874 - Lx8 LINE L1 -337 7136 6259 4 888 221 0 0 33 chr5 39807385 39807415 -112729844 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 4 888 2294 279 79 40 chr5 39807415 39807428 -112729831 - Lx8 LINE L1 -1215 6258 6257 4 888 318 26 0 0 chr5 39807428 39807467 -112729792 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 4 888 2294 279 79 40 chr5 39807467 39807616 -112729643 - Lx8 LINE L1 -1217 6256 6100 4 888 190 300 20 0 chr5 39808435 39808485 -112728774 + MIR SINE MIR 49 99 -163 4 888 305 188 12 0 chr5 39809489 39809569 -112727690 + CT-rich Low_complexity Low_complexity 5 85 0 4 888 307 210 16 0 chr5 39809603 39809665 -112727594 + ORR1D1 LTR MaLR 1 63 -311 4 888 185 261 133 75 chr5 39810100 39810220 -112727039 - MIRb SINE MIR -27 241 115 4 888 641 256 87 29 chr5 39810414 39810655 -112726604 + MLT1C LTR MaLR 28 282 -185 4 888 185 132 0 26 chr5 39810959 39810998 -112726261 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 4 888 269 197 0 15 chr5 39811244 39811311 -112725948 + GA-rich Low_complexity Low_complexity 1 66 0 4 888 1351 50 0 11 chr5 39811319 39811501 -112725758 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 888 219 276 0 0 chr5 39811912 39811999 -112725260 + (TGGA)n Simple_repeat Simple_repeat 1 87 0 4 888 267 306 26 121 chr5 39813596 39813860 -112723399 + Charlie20a DNA Charlie 381 619 -188 4 888 308 255 73 64 chr5 39813870 39813979 -112723280 + MIR SINE MIR 82 191 -71 4 888 528 122 0 0 chr5 39814001 39814083 -112723176 + (CA)n Simple_repeat Simple_repeat 1 82 0 4 888 381 209 44 35 chr5 39814084 39814198 -112723061 - RMER10B LTR ERVL -56 342 228 4 888 519 60 0 0 chr5 39816112 39816179 -112721080 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 888 21 0 0 0 chr5 39816585 39816606 -112720653 + AT_rich Low_complexity Low_complexity 1 21 0 4 888 889 272 127 57 chr5 39817691 39818045 -112719214 + MTEa LTR MaLR 1 379 0 4 888 259 281 94 108 chr5 39818449 39818672 -112718587 + RMER17C LTR ERVK 127 346 -64 4 888 2104 102 41 16 chr5 39820010 39820328 -112716931 - ORR1A4 LTR MaLR 0 329 4 4 888 216 0 0 0 chr5 39820691 39820715 -112716544 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 4 888 1545 288 95 27 chr5 39822039 39822595 -112714664 + MTE-int LTR MaLR 847 1440 -140 4 888 575 296 20 45 chr5 39822655 39822853 -112714406 + ORR1E LTR MaLR 10 202 -157 4 888 317 280 0 0 chr5 39822977 39823052 -112714207 + MTE-int LTR MaLR 981 1055 -525 4 888 597 114 0 0 chr5 39823269 39823383 -112713876 + (T)n Simple_repeat Simple_repeat 1 114 0 4 888 367 362 28 80 chr5 39824229 39824442 -112712817 - MER58A DNA MER1_type -22 202 1 4 888 261 281 141 0 chr5 39824486 39824550 -112712709 + RSINE1 SINE B4 76 148 -17 4 888 353 342 25 31 chr5 39825663 39825826 -112711433 + RSINE1 SINE B4 3 164 -1 4 888 224 59 29 0 chr5 39825826 39825860 -112711399 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 888 255 324 118 0 chr5 39825916 39826018 -112711241 + ORR1E LTR MaLR 197 310 -69 4 888 3489 30 0 0 chr5 39826533 39826929 -112710330 + MTA_Mm LTR MaLR 1 396 0 4 888 259 336 49 12 chr5 39828530 39828642 -112708617 - PB1D10 SINE Alu -29 118 1 4 888 495 0 0 0 chr5 39830250 39830305 -112706954 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 888 1808 205 86 3 chr5 39830957 39831342 -112705917 + MTD LTR MaLR 1 405 -14 4 888 1237 334 116 22 chr5 39832522 39833322 -112703937 + Cheshire DNA MER1_type 1258 2132 -288 4 888 307 418 65 8 chr5 39833336 39833582 -112703677 + B4 SINE B4 29 288 -4 4 888 302 305 52 30 chr5 39833793 39833928 -112703331 + L1MC4 LINE L1 7762 7899 -143 4 888 189 0 0 0 chr5 39834022 39834043 -112703216 + (A)n Simple_repeat Simple_repeat 1 21 0 4 888 207 305 130 60 chr5 39834118 39834303 -112702956 + L2a LINE L2 3228 3425 -1 4 888 241 393 49 21 chr5 39834720 39834863 -112702396 - MIRc SINE MIR -102 166 20 4 888 214 266 48 103 chr5 39835779 39835819 -112701440 - B3 SINE B2 -12 204 165 4 888 306 0 0 0 chr5 39835819 39835853 -112701406 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 888 218 266 48 103 chr5 39835853 39835938 -112701321 - B3A SINE B2 -52 164 86 4 888 249 294 101 0 chr5 39837432 39837541 -112699718 + L1MA6 LINE L1 6122 6241 -59 4 888 843 206 0 0 chr5 39837645 39837825 -112699434 + CT-rich Low_complexity Low_complexity 1 180 0 4 888 2129 190 13 10 chr5 39838545 39838938 -112698321 - ORR1B1 LTR MaLR 0 394 1 4 888 282 370 42 35 chr5 39840578 39840721 -112696538 - ID_B1 SINE B4 0 224 81 4 888 523 286 47 5 chr5 39840760 39840950 -112696309 - MLT2B4 LTR ERVL -358 198 1 4 888 245 310 77 34 chr5 39841221 39841338 -112695921 + MIR SINE MIR 64 185 -77 4 888 1820 222 66 3 chr5 39841410 39841789 -112695470 - MTD LTR MaLR -14 405 3 4 888 729 242 23 16 chr5 39843213 39843414 -112693845 - MLT1A0 LTR MaLR -19 371 176 4 888 407 226 130 0 chr5 39843592 39843707 -112693552 + MLT1A0 LTR MaLR 25 154 -211 4 888 680 303 69 22 chr5 39843708 39843985 -112693274 + B4 SINE B4 1 290 -2 4 888 513 343 32 32 chr5 39844053 39844273 -112692986 + MLT1A0 LTR MaLR 142 361 -4 4 888 232 326 20 59 chr5 39844475 39844576 -112692683 - LTR16E1 LTR ERVL -11 527 431 4 888 187 385 37 37 chr5 39844950 39845166 -112692093 - MIRb SINE MIR -15 253 38 4 13 211 364 98 0 chr5 39845765 39845897 -112691362 - L2 LINE L2 -636 2783 2639 4 889 1105 287 77 16 chr5 39845909 39846288 -112690971 + MTD LTR MaLR 18 419 0 4 889 359 260 67 0 chr5 39846355 39846459 -112690800 - L1MCa LINE L1 -5775 733 623 4 889 347 291 54 47 chr5 39847156 39847304 -112689955 - L1M2 LINE L1 -838 5305 5157 4 889 527 320 102 21 chr5 39847312 39847644 -112689615 - Lx8 LINE L1 -2 7471 7113 4 889 487 260 51 43 chr5 39847905 39848162 -112689097 + L1MA7 LINE L1 5570 5828 -463 5 889 302 314 108 36 chr5 39848489 39848628 -112688631 + RSINE1 SINE B4 2 150 -15 5 889 492 18 0 0 chr5 39849854 39849911 -112687348 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 889 360 347 145 78 chr5 39850295 39850564 -112686695 - B4A SINE B4 0 292 6 5 889 29 0 0 0 chr5 39851149 39851178 -112686081 + AT_rich Low_complexity Low_complexity 1 29 0 5 889 725 218 61 41 chr5 39851178 39851374 -112685885 - B3 SINE B2 -15 201 2 5 889 291 276 79 0 chr5 39851400 39851527 -112685732 - Lx7 LINE L1 -1800 5896 5760 5 889 655 287 23 13 chr5 39851545 39851852 -112685407 - Lx7 LINE L1 -471 5409 5100 5 889 293 336 30 38 chr5 39852178 39852441 -112684818 - L1M2 LINE L1 -3394 2749 2489 5 889 301 40 19 39 chr5 39852703 39852755 -112684504 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 889 28837 110 14 16 chr5 39854314 39860502 -112676757 - L1_Mus1 LINE L1 0 6567 442 5 889 316 175 74 12 chr5 39860659 39860740 -112676519 - L1MA8 LINE L1 -350 5941 5856 5 889 1329 265 103 21 chr5 39860821 39861199 -112676060 + MTD LTR MaLR 11 419 0 5 889 872 337 51 39 chr5 39861747 39862334 -112674925 - Tigger9a DNA Tigger -1 731 138 5 889 21 36 0 0 chr5 39862586 39862614 -112674645 + AT_rich Low_complexity Low_complexity 1 28 0 5 889 347 282 9 28 chr5 39863220 39863326 -112673933 + MTEb LTR MaLR 1 104 -275 5 889 817 266 45 0 chr5 39863458 39863657 -112673602 + MTEb LTR MaLR 154 361 -18 5 889 307 288 46 16 chr5 39863834 39864028 -112673231 - HAL1 LINE L1 -1241 1266 1067 5 889 1196 280 128 30 chr5 39864755 39865466 -112671793 - Lx9 LINE L1 -7 7637 6857 5 889 736 278 43 4 chr5 39865473 39865729 -112671530 - Lx9 LINE L1 -1101 6543 6278 5 889 216 0 0 0 chr5 39866270 39866294 -112670965 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 889 385 320 84 84 chr5 39866793 39866984 -112670275 - B3 SINE B2 -25 191 1 5 889 24 0 0 0 chr5 39867269 39867293 -112669966 + AT_rich Low_complexity Low_complexity 1 24 0 5 889 725 214 56 56 chr5 39867950 39868148 -112669111 + B3A SINE B2 1 198 0 5 889 676 273 91 25 chr5 39868383 39868747 -112668512 - MLT1B LTR MaLR -2 388 1 5 889 268 374 133 8 chr5 39869391 39869655 -112667604 + L2a LINE L2 2917 3213 -213 5 889 203 320 53 13 chr5 39869692 39869768 -112667491 + L2a LINE L2 3292 3370 -5 5 889 359 357 22 6 chr5 39870013 39870196 -112667063 - MIR SINE MIR -6 256 71 5 889 680 302 23 16 chr5 39870592 39870802 -112666457 + B3A SINE B2 1 200 -16 5 889 201 276 53 75 chr5 39871124 39871218 -112666041 - L2 LINE L2 -685 2734 2643 5 889 4085 153 49 24 chr5 39871705 39872703 -112664556 + Lx4B LINE L1 5938 7055 -3 5 889 207 98 19 56 chr5 39872721 39872775 -112664484 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 5 889 207 0 0 0 chr5 39872941 39872964 -112664295 + (A)n Simple_repeat Simple_repeat 1 23 0 5 889 752 149 7 0 chr5 39872964 39873105 -112664154 + GA-rich Low_complexity Low_complexity 3 144 0 5 889 246 32 0 0 chr5 39874857 39874888 -112662371 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 889 863 50 25 0 chr5 39874961 39875080 -112662179 + (GGAGAA)n Simple_repeat Simple_repeat 6 127 0 5 889 285 198 0 0 chr5 39876056 39876147 -112661112 + GA-rich Low_complexity Low_complexity 1 91 0 5 889 947 303 19 33 chr5 39876205 39876475 -112660784 - B4A SINE B4 -18 274 9 5 889 488 313 13 13 chr5 39876690 39876842 -112660417 - MER5A1 DNA MER1_type -7 159 8 5 889 260 314 46 28 chr5 39877516 39877624 -112659635 + MLT1K LTR MaLR 438 547 -48 5 889 350 172 0 0 chr5 39877625 39877689 -112659570 + MT2A LTR ERVL 3 66 -467 5 889 550 212 126 22 chr5 39877726 39877861 -112659398 + MT2A LTR ERVL 316 464 -69 5 889 185 219 0 0 chr5 39879802 39879834 -112657425 + L2a LINE L2 3377 3408 -18 5 889 301 368 11 0 chr5 39879838 39879933 -112657326 + MIR3 SINE MIR 74 169 -39 5 889 240 283 82 36 chr5 39880414 39880524 -112656735 - MER53 DNA hAT -78 115 1 5 889 241 362 58 13 chr5 39881393 39881547 -112655712 + LTR84a LTR ERVL 431 591 -166 5 889 270 73 0 0 chr5 39881885 39881926 -112655333 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 889 325 211 0 38 chr5 39882385 39882464 -112654795 + PB1D10 SINE Alu 42 117 0 5 889 24 0 0 0 chr5 39882501 39882525 -112654734 + AT_rich Low_complexity Low_complexity 1 24 0 5 889 230 273 39 13 chr5 39882998 39883076 -112654183 + MIR SINE MIR 106 185 -77 5 889 292 378 27 0 chr5 39883752 39883863 -112653396 + PB1D10 SINE Alu 3 116 -1 5 889 216 158 0 0 chr5 39883874 39883912 -112653347 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 5 889 1253 69 17 0 chr5 39883980 39884155 -112653104 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 5 889 450 65 0 0 chr5 39884157 39884219 -112653040 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 889 1554 128 66 22 chr5 39884364 39884636 -112652623 - L1_Mus4 LINE L1 -8 6628 6345 5 889 1118 86 74 0 chr5 39884636 39884811 -112652448 + L1_Mus4 LINE L1 6193 6380 -256 5 889 264 376 32 0 chr5 39885273 39885398 -112651861 + MER5A1 DNA MER1_type 6 134 -32 5 889 309 68 0 0 chr5 39885882 39885926 -112651333 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 889 764 111 8 0 chr5 39885929 39886055 -112651204 + (TAGA)n Simple_repeat Simple_repeat 2 128 0 5 889 330 279 17 21 chr5 39886055 39886211 -112651048 + GA-rich Low_complexity Low_complexity 1 155 0 5 889 327 25 0 0 chr5 39886616 39886656 -112650603 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 5 889 713 154 49 0 chr5 39886656 39886818 -112650441 + CT-rich Low_complexity Low_complexity 5 174 0 5 889 1506 22 0 0 chr5 39886818 39886996 -112650263 + (TC)n Simple_repeat Simple_repeat 1 178 0 5 889 5280 157 2 17 chr5 39887240 39888110 -112649149 + Lx4B LINE L1 6191 7047 -11 5 889 486 0 0 0 chr5 39889017 39889071 -112648188 + (TTC)n Simple_repeat Simple_repeat 3 56 0 5 889 1162 90 6 11 chr5 39889071 39889250 -112648009 + (TCC)n Simple_repeat Simple_repeat 3 180 0 5 889 192 354 90 10 chr5 39890205 39890305 -112646954 + MIR SINE MIR 33 140 -122 5 889 384 343 54 36 chr5 39890328 39890606 -112646653 + Lx9 LINE L1 7134 7416 -228 5 889 537 16 0 0 chr5 39890609 39890671 -112646588 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 889 2328 136 33 49 chr5 39891473 39891899 -112645360 - Lx2 LINE L1 0 6997 6579 5 889 360 158 0 0 chr5 39891946 39892041 -112645218 + T-rich Low_complexity Low_complexity 1 95 0 5 889 39093 11 2 6 chr5 39892330 39898709 -112638550 - L1Md_A LINE L1 0 6582 235 5 889 221 326 11 63 chr5 39900231 39900326 -112636933 + MIRc SINE MIR 15 104 -164 5 889 747 292 42 58 chr5 39900566 39901013 -112636246 - Lx9 LINE L1 -38 7606 7167 5 889 378 343 43 23 chr5 39901446 39901632 -112635627 - MLT1E1A LTR MaLR -1 679 461 5 889 22 70 0 0 chr5 39902629 39902672 -112634587 + AT_rich Low_complexity Low_complexity 1 43 0 5 889 901 103 13 13 chr5 39904200 39904357 -112632902 + (CATA)n Simple_repeat Simple_repeat 2 158 0 5 889 868 284 77 16 chr5 39904413 39904724 -112632535 - Lx8 LINE L1 -220 7253 6924 5 889 1177 96 0 0 chr5 39906696 39906863 -112630396 - L1_Mus2 LINE L1 0 6566 6400 5 889 1210 168 51 0 chr5 39908115 39908329 -112628930 + URR1B DNA MER1_type 1 225 0 5 889 2668 34 12 3 chr5 39908446 39908770 -112628489 - IAPLTR2b LTR ERVK 0 327 1 5 889 222 371 45 32 chr5 39908819 39908975 -112628284 - MIRb SINE MIR -75 193 36 5 889 957 133 0 0 chr5 39909139 39909297 -112627962 + (TA)n Simple_repeat Simple_repeat 2 159 0 5 889 188 133 44 0 chr5 39909433 39909478 -112627781 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 889 773 331 31 8 chr5 39909535 39910022 -112627237 - L1M2 LINE L1 -1231 4912 4415 5 889 507 346 12 12 chr5 39910110 39910271 -112626988 + RSINE1 SINE B4 5 165 0 5 889 227 271 71 102 chr5 39910271 39910307 -112626952 + B2_Mm2 SINE B2 4 194 -1 5 889 325 302 47 0 chr5 39910308 39910457 -112626802 - L1M2 LINE L1 -1823 4317 4162 5 889 1555 261 80 57 chr5 39910482 39911852 -112625407 - RMER1B Other Other -9 1057 1 5 889 1029 145 0 0 chr5 39912390 39912569 -112624690 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 889 534 129 0 0 chr5 39912569 39912654 -112624605 + (GGGA)n Simple_repeat Simple_repeat 1 85 0 5 889 238 324 79 26 chr5 39913396 39913548 -112623711 - L3 LINE CR1 -155 4334 4175 5 889 254 323 107 54 chr5 39914211 39914364 -112622895 + MLT1J2 LTR MaLR 48 246 -266 5 889 1820 68 0 8 chr5 39914760 39914999 -112622260 - L1_Mus1 LINE L1 -1 6566 6330 5 889 2534 58 0 0 chr5 39914999 39915328 -112621931 + L1Md_F2 LINE L1 6005 6333 -249 5 889 191 303 32 43 chr5 39915338 39915431 -112621828 - L2c LINE L2 -55 3332 3241 5 889 1147 294 43 9 chr5 39915622 39915985 -112621274 + MTE2b LTR MaLR 1 359 0 5 889 408 389 60 31 chr5 39916193 39916501 -112620758 - MLT1H1 LTR MaLR -220 335 35 5 889 398 333 0 0 chr5 39916919 39917054 -112620205 + B1F SINE Alu 15 149 0 5 889 4276 89 3 2 chr5 39917076 39917659 -112619600 + MT2B2 LTR ERVL 1 584 0 5 889 363 73 0 0 chr5 39917749 39917804 -112619455 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 889 600 143 0 0 chr5 39917804 39917930 -112619329 + (GA)n Simple_repeat Simple_repeat 1 126 0 5 889 324 94 0 0 chr5 39918160 39918213 -112619046 + (A)n Simple_repeat Simple_repeat 1 53 0 5 889 292 339 16 73 chr5 39918241 39918365 -112618894 + PB1D10 SINE Alu 1 117 0 5 889 1283 255 23 73 chr5 39918597 39918995 -112618264 - MTE2a LTR MaLR -1 378 1 5 889 228 300 56 14 chr5 39919380 39919451 -112617808 + L2b LINE L2 3083 3156 -219 5 889 399 285 120 16 chr5 39919700 39919825 -112617434 - RSINE1 SINE B4 0 165 28 5 889 189 94 0 0 chr5 39919827 39919859 -112617400 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 6 889 2111 49 0 0 chr5 39920051 39920314 -112616945 - L1Md_A LINE L1 0 6582 6320 6 889 279 79 0 0 chr5 39920581 39920619 -112616640 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 6 889 461 351 133 22 chr5 39920780 39921269 -112615990 + L2a LINE L2 2789 3328 -98 6 889 608 344 24 24 chr5 39922199 39922488 -112614771 + B4A SINE B4 2 290 -2 6 889 276 344 16 39 chr5 39922602 39922689 -112614570 - RMER30 DNA MER1_type -30 172 87 6 889 342 0 0 0 chr5 39922689 39922727 -112614532 + (TA)n Simple_repeat Simple_repeat 1 38 0 6 889 276 344 16 39 chr5 39922727 39922766 -112614493 - RMER30 DNA MER1_type -116 86 49 6 889 2458 189 95 26 chr5 39923857 39924404 -112612855 - RMER4B LTR ERVK 0 585 1 6 889 425 288 98 27 chr5 39924912 39925137 -112612122 + L1M2 LINE L1 3223 3463 -2680 6 889 539 226 6 0 chr5 39925169 39925328 -112611931 + (CA)n Simple_repeat Simple_repeat 2 161 0 6 889 623 275 73 149 chr5 39926153 39926563 -112610696 + MTEa LTR MaLR 1 379 0 6 889 276 149 0 0 chr5 39926940 39926987 -112610272 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 6 889 528 138 0 0 chr5 39927049 39927165 -112610094 + (TAGA)n Simple_repeat Simple_repeat 4 119 0 6 889 225 147 0 0 chr5 39927171 39927205 -112610054 - B4A SINE B4 -64 228 195 6 889 456 67 0 0 chr5 39927208 39927268 -112609991 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 889 869 343 24 8 chr5 39928617 39928870 -112608389 - B4A SINE B4 -14 278 22 6 889 538 318 81 65 chr5 39929057 39929345 -112607914 + MLT1F2 LTR MaLR 273 654 -26 6 889 567 43 0 0 chr5 39929867 39929937 -112607322 + (TA)n Simple_repeat Simple_repeat 2 71 0 6 889 368 299 99 39 chr5 39930208 39930570 -112606689 + L1M5 LINE L1 5389 5772 -352 6 889 1695 130 7 7 chr5 39930947 39931234 -112606025 - L1_Mus4 LINE L1 0 6636 6350 6 889 414 0 0 0 chr5 39931715 39931761 -112605498 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 889 1849 172 47 53 chr5 39933046 39933426 -112603833 - ORR1C1 LTR MaLR 0 378 1 6 889 315 0 0 0 chr5 39933620 39933655 -112603604 + (TC)n Simple_repeat Simple_repeat 2 36 0 6 889 5184 72 13 1 chr5 39933671 39934353 -112602906 - L1_Mus1 LINE L1 -1 6566 5877 6 889 1683 51 0 0 chr5 39934353 39934568 -112602691 + L1_Mus1 LINE L1 5665 5879 -688 6 889 232 339 62 16 chr5 39935755 39935884 -112601375 - L2c LINE L2 -13 3374 3240 6 889 486 0 0 0 chr5 39936302 39936356 -112600903 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 889 5699 42 0 0 chr5 39936558 39937242 -112600017 - L1Md_T LINE L1 0 6582 5899 6 889 414 0 0 0 chr5 39938724 39938770 -112598489 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 889 380 214 69 107 chr5 39938790 39938921 -112598338 - PB1D9 SINE Alu -5 144 19 6 889 593 259 63 0 chr5 39939078 39939221 -112598038 - RSINE1 SINE B4 -12 153 2 6 889 334 108 13 13 chr5 39939250 39939325 -112597934 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 6 889 5806 157 15 21 chr5 39939389 39939779 -112597480 - Lx LINE L1 -3 6651 6252 6 889 2968 69 10 18 chr5 39939779 39940178 -112597081 + MTA_Mm LTR MaLR 1 396 0 6 889 18417 133 12 43 chr5 39940178 39946184 -112591075 - Lx LINE L1 -403 6251 391 6 889 610 301 182 69 chr5 39946204 39946639 -112590620 - MLT1D LTR MaLR 0 505 22 6 889 412 310 150 76 chr5 39946904 39947218 -112590041 + MTEa LTR MaLR 1 337 -42 6 889 1160 61 0 0 chr5 39947223 39947370 -112589889 - B1_Mus2 SINE Alu 0 147 1 6 889 183 42 0 0 chr5 39947646 39947670 -112589589 + (TA)n Simple_repeat Simple_repeat 1 24 0 6 889 757 117 148 0 chr5 39948043 39948171 -112589088 + B1_Mus1 SINE Alu 2 148 0 6 889 188 161 0 35 chr5 39948198 39948256 -112589003 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 6 889 257 0 30 0 chr5 39949234 39949267 -112587992 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 889 226 195 49 0 chr5 39949608 39949649 -112587610 - MIRm SINE MIR -120 156 114 6 889 298 215 12 158 chr5 39951144 39951315 -112585944 + Tigger9b DNA MER2_type 334 479 -145 6 889 5834 86 81 3 chr5 39951454 39952319 -112584940 + Lx3_Mus LINE L1 6077 7008 -1 6 889 187 326 0 0 chr5 39952383 39952429 -112584830 - MIRm SINE MIR -193 83 38 6 889 1714 181 59 51 chr5 39953881 39954254 -112583005 - ORR1C1 LTR MaLR -2 376 1 6 889 484 256 80 18 chr5 39954777 39954940 -112582319 + MLT1B LTR MaLR 9 181 -209 6 889 396 0 0 0 chr5 39954990 39955034 -112582225 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 889 3912 168 71 10 chr5 39955112 39955946 -112581313 + L1_Mus1 LINE L1 307 1209 -5877 6 889 387 111 0 0 chr5 39955914 39955977 -112581282 + L1_Mus1 LINE L1 1113 1175 -5441 6 889 14039 91 2 2 chr5 39955976 39958790 -112578469 + L1_Mus1 LINE L1 3755 6567 0 6 889 21 36 0 0 chr5 39958792 39958820 -112578439 + AT_rich Low_complexity Low_complexity 1 28 0 6 889 468 35 0 0 chr5 39959017 39959075 -112578184 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 889 1697 232 18 192 chr5 39959704 39960440 -112576819 - RMER19C LTR ERVK -3 608 1 6 889 599 345 96 20 chr5 39960905 39961248 -112576011 - MLT1B LTR MaLR -2 388 20 6 889 197 331 60 74 chr5 39961529 39961727 -112575532 + MIR SINE MIR 9 207 -61 6 889 3508 197 56 65 chr5 39961935 39963493 -112573766 + L1_Mur3 LINE L1 931 2538 -3339 6 889 2154 217 47 29 chr5 39963513 39964026 -112573233 + RLTR11A LTR ERVK 7 528 0 6 889 6316 171 32 25 chr5 39964029 39965508 -112571751 + L1_Mur3 LINE L1 2551 4040 -1840 6 889 2106 120 9 25 chr5 39965509 39965833 -112571426 + ORR1A2 LTR MaLR 1 319 -8 6 889 4438 183 89 20 chr5 39965837 39966853 -112570406 + ORR1A2-int LTR MaLR 1 1086 -877 6 889 4440 190 55 5 chr5 39966854 39967876 -112569383 + L1_Mur3 LINE L1 4038 5110 -770 6 889 33683 47 1 3 chr5 39967875 39973220 -112564039 + L1Md_T LINE L1 162 5589 -297 6 889 8218 39 3 1 chr5 39973220 39974214 -112563045 + L1Md_T LINE L1 5590 6585 0 6 889 4922 226 41 81 chr5 39974233 39975758 -112561501 + Lx7 LINE L1 6233 7696 0 6 889 640 310 0 23 chr5 39976171 39976346 -112560913 + B3A SINE B2 3 173 -25 6 111 2152 218 83 71 chr5 39976363 39977120 -112560139 + Lx7 LINE L1 6928 7693 -3 6 890 580 322 125 26 chr5 39977664 39977976 -112559283 - MLT1A0 LTR MaLR -4 361 19 6 890 712 244 82 5 chr5 39979842 39980036 -112557223 + B3 SINE B2 2 210 -6 6 890 212 204 41 0 chr5 39981108 39981157 -112556102 + CT-rich Low_complexity Low_complexity 1 51 0 6 890 246 286 176 22 chr5 39981367 39981503 -112555756 - MLT1A LTR MaLR -216 158 2 6 890 207 192 64 36 chr5 39981911 39981978 -112555281 + MIRb SINE MIR 191 266 -2 6 890 618 14 0 0 chr5 39982665 39982736 -112554523 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 890 246 199 97 46 chr5 39983589 39983684 -112553575 + PB1D10 SINE Alu 1 102 -18 6 890 423 0 0 0 chr5 39983690 39983737 -112553522 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 890 369 43 0 0 chr5 39983737 39983783 -112553476 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 890 360 212 14 7 chr5 39983817 39983955 -112553304 + (TA)n Simple_repeat Simple_repeat 2 140 0 6 890 285 56 0 0 chr5 39983955 39983991 -112553268 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 890 320 314 9 9 chr5 39983994 39984096 -112553163 + ID2 SINE ID 5 106 -46 6 890 1179 73 44 17 chr5 39984259 39984440 -112552819 - MTA_Mm LTR MaLR -210 186 1 6 890 684 272 30 0 chr5 39984708 39984910 -112552349 - B3 SINE B2 -4 212 5 6 890 214 330 88 56 chr5 39985249 39985374 -112551885 - L3b LINE CR1 -36 446 318 6 890 216 264 0 0 chr5 39986155 39986208 -112551051 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 890 189 0 0 0 chr5 39987195 39987216 -112550043 + (T)n Simple_repeat Simple_repeat 1 21 0 6 890 250 396 37 9 chr5 39987537 39987644 -112549615 - B3A SINE B2 -18 180 71 6 890 185 271 140 40 chr5 39987874 39987974 -112549285 - MIRb SINE MIR -131 137 28 6 890 3101 61 0 45 chr5 39988696 39989122 -112548137 + MTB_Mm LTR MaLR 1 407 0 6 890 207 234 85 0 chr5 39989148 39989195 -112548064 + MIRc SINE MIR 41 91 -177 6 890 336 253 0 0 chr5 39989628 39989719 -112547540 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 890 375 23 0 0 chr5 39989727 39989771 -112547488 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 890 7864 40 17 1 chr5 39989912 39990913 -112546346 - MT-int LTR MaLR -71 1027 20 6 890 396 0 0 0 chr5 39991442 39991486 -112545773 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 890 279 165 35 0 chr5 39992112 39992197 -112545062 + (TA)n Simple_repeat Simple_repeat 2 89 0 6 890 246 32 0 0 chr5 39992839 39992870 -112544389 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 6 890 264 346 92 0 chr5 39992870 39993000 -112544259 + LTR55 LTR ERV 88 229 -319 6 890 458 143 39 48 chr5 39993330 39993433 -112543826 - MTEb LTR MaLR -2 377 276 6 890 348 260 94 51 chr5 39993400 39993538 -112543721 - MTEb LTR MaLR -219 160 17 6 890 356 312 141 13 chr5 39994198 39994581 -112542678 - L1MB4 LINE L1 -6 6174 5743 6 890 1157 255 108 15 chr5 39994583 39994917 -112542342 + ORR1D2 LTR MaLR 1 365 -5 6 890 494 339 66 84 chr5 39995459 39995852 -112541407 - MER21B LTR ERV1 -66 797 412 6 890 21 0 0 0 chr5 39996430 39996451 -112540808 + AT_rich Low_complexity Low_complexity 1 21 0 6 890 279 0 0 0 chr5 39996612 39996643 -112540616 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 890 339 295 18 37 chr5 39997343 39997452 -112539807 + MLT1F LTR MaLR 6 112 -436 6 890 180 0 0 0 chr5 39998189 39998209 -112539050 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 890 339 300 165 0 chr5 39998317 39998487 -112538772 - MLT1E LTR MaLR -24 629 432 6 890 473 329 14 14 chr5 39998686 39998831 -112538428 - MLT1E LTR MaLR -506 147 3 6 890 212 316 40 0 chr5 39999127 39999203 -112538056 + MIR SINE MIR 110 188 -74 6 890 245 242 192 0 chr5 39999256 39999355 -112537904 - MIRb SINE MIR -66 202 85 6 890 369 293 9 0 chr5 40000027 40000143 -112537116 - PB1D10 SINE Alu 0 117 1 1 890 250 308 98 0 chr5 40000464 40000607 -112536652 - LTR16A1 LTR ERVL -81 375 219 2 890 405 0 0 0 chr5 40003005 40003050 -112534209 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 890 675 37 0 0 chr5 40003859 40003941 -112533318 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 4 890 207 0 0 0 chr5 40004864 40004887 -112532372 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 5 890 21 0 0 0 chr5 40005132 40005153 -112532106 + AT_rich Low_complexity Low_complexity 1 21 0 6 890 863 229 35 22 chr5 40006753 40006985 -112530274 - MER58B DNA MER1_type -1 340 106 7 890 429 279 24 60 chr5 40007008 40007176 -112530083 - B3A SINE B2 -16 182 21 8 890 938 226 19 10 chr5 40008437 40008643 -112528616 + B3 SINE B2 3 210 -6 9 890 387 0 0 0 chr5 40008815 40008858 -112528401 + (GGTTG)n Simple_repeat Simple_repeat 5 47 0 1 890 927 154 92 149 chr5 40009315 40009643 -112527616 + Lx9 LINE L1 7335 7643 -1 1 890 3266 90 9 22 chr5 40009689 40010142 -112527117 - LTRIS5 LTR ERV1 0 447 1 1 890 363 44 0 0 chr5 40010238 40010283 -112526976 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 890 365 331 11 11 chr5 40010461 40010641 -112526618 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 890 234 0 0 0 chr5 40010641 40010667 -112526592 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 890 239 269 50 8 chr5 40011453 40011573 -112525686 - MER33 DNA MER1_type -109 215 91 1 890 358 219 0 47 chr5 40012163 40012249 -112525010 - B3A SINE B2 -116 82 1 1 890 669 101 0 0 chr5 40012272 40012371 -112524888 + (CGTG)n Simple_repeat Simple_repeat 2 100 0 1 890 200 291 166 28 chr5 40013142 40013287 -112523972 + L3 LINE CR1 4221 4385 -104 1 890 360 0 0 0 chr5 40013976 40014016 -112523243 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 890 405 0 0 0 chr5 40014797 40014842 -112522417 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 890 261 0 0 0 chr5 40016124 40016153 -112521106 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 890 477 328 34 45 chr5 40017222 40017490 -112519769 + MLT1A LTR MaLR 48 312 -62 2 890 244 330 34 17 chr5 40017600 40017717 -112519542 - MER102b DNA MER1_type -19 322 204 2 890 236 274 253 0 chr5 40018493 40018588 -112518671 + PB1D9 SINE Alu 2 120 0 2 890 331 357 70 0 chr5 40018721 40018906 -112518353 - Tigger5 DNA MER2_type -2183 223 26 2 890 244 292 7 52 chr5 40019210 40019365 -112517894 + (CATA)n Simple_repeat Simple_repeat 4 151 0 2 890 366 204 0 0 chr5 40019365 40019468 -112517791 + GA-rich Low_complexity Low_complexity 2 104 0 2 890 322 338 47 33 chr5 40020188 40020402 -112516857 + MIR SINE MIR 46 262 0 2 890 297 0 0 0 chr5 40023844 40023877 -112513382 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 890 2050 299 100 43 chr5 40026039 40027198 -112510061 - Lx8 LINE L1 -187 7286 6062 3 890 21 0 0 0 chr5 40027870 40027891 -112509368 + GC_rich Low_complexity Low_complexity 1 21 0 3 890 675 271 68 15 chr5 40032167 40032373 -112504886 + ID_B1 SINE B4 8 224 0 3 890 378 0 0 0 chr5 40033777 40033819 -112503440 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 890 205 191 0 0 chr5 40035066 40035108 -112502151 + A-rich Low_complexity Low_complexity 1 42 0 3 890 183 114 0 0 chr5 40035894 40035929 -112501330 + (GGA)n Simple_repeat Simple_repeat 1 35 0 3 890 387 0 0 0 chr5 40036817 40036860 -112500399 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 890 201 158 0 0 chr5 40037881 40037919 -112499340 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 3 890 279 71 0 0 chr5 40038193 40038235 -112499024 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 3 890 315 326 61 81 chr5 40038242 40038411 -112498848 + B3A SINE B2 1 170 -28 4 890 342 0 0 0 chr5 40038411 40038449 -112498810 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 890 405 0 0 0 chr5 40038449 40038493 -112498766 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 890 315 326 61 81 chr5 40038493 40038519 -112498740 + B3A SINE B2 171 192 -6 4 890 522 0 0 0 chr5 40039026 40039084 -112498175 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 890 424 257 43 34 chr5 40039106 40039223 -112498036 - B4A SINE B4 -13 279 162 4 890 504 48 0 0 chr5 40039383 40039446 -112497813 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 890 444 37 0 0 chr5 40040662 40040716 -112496543 + (CCA)n Simple_repeat Simple_repeat 2 55 0 4 890 403 285 62 0 chr5 40040946 40041076 -112496183 + B4A SINE B4 155 292 0 4 890 315 0 0 0 chr5 40041156 40041191 -112496068 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 890 1247 84 0 6 chr5 40041200 40041379 -112495880 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 4 890 684 0 0 0 chr5 40041381 40041457 -112495802 + (GGAAA)n Simple_repeat Simple_repeat 1 76 0 5 890 21 0 0 0 chr5 40041654 40041675 -112495584 + AT_rich Low_complexity Low_complexity 1 21 0 5 890 23 0 0 0 chr5 40042103 40042126 -112495133 + AT_rich Low_complexity Low_complexity 1 23 0 5 890 214 322 25 42 chr5 40042149 40042269 -112494990 - L2b LINE L2 0 3375 3258 5 890 269 229 46 28 chr5 40042557 40042665 -112494594 + (TCTA)n Simple_repeat Simple_repeat 2 111 0 5 890 781 181 41 0 chr5 40042676 40042997 -112494262 + (TCTA)n Simple_repeat Simple_repeat 1 334 0 5 890 547 245 33 56 chr5 40044689 40044887 -112492372 + MLT1C LTR MaLR 197 449 -18 5 890 654 321 94 47 chr5 40045162 40045695 -112491564 - MLT1F2 LTR MaLR -2 558 1 5 890 310 286 20 10 chr5 40046300 40046399 -112490860 - ID_B1 SINE B4 0 224 125 5 890 241 293 13 13 chr5 40047098 40047174 -112490085 - ID4 SINE ID -2 81 6 5 890 231 287 119 57 chr5 40047796 40047955 -112489304 + MurSatRep1 Unknown Unknown 195 363 -1774 5 890 761 302 28 0 chr5 40048356 40048571 -112488688 - ID_B1 SINE B4 -1 223 3 6 890 1152 266 42 65 chr5 40050087 40050473 -112486786 + MTEa LTR MaLR 1 377 -2 6 890 374 311 89 70 chr5 40050613 40050983 -112486276 - L3 LINE CR1 -421 4068 3692 6 890 383 319 24 24 chr5 40051579 40051743 -112485516 + MLT1F2 LTR MaLR 343 506 -54 6 890 2217 216 22 75 chr5 40052305 40052729 -112484530 - RLTR18B LTR ERVK -3 509 108 6 890 3104 79 40 2 chr5 40052729 40053149 -112484110 + L1_Mus2 LINE L1 6131 6566 0 6 890 2217 216 22 75 chr5 40053149 40053259 -112484000 - RLTR18B LTR ERVK -405 107 3 6 890 4558 187 74 39 chr5 40053274 40054280 -112482979 - RLTR18-int LTR ERVK -10 5351 4311 6 890 182 382 11 11 chr5 40054909 40054999 -112482260 - MIR3 SINE MIR -50 158 69 6 890 316 324 0 18 chr5 40055833 40055943 -112481316 + GA-rich Low_complexity Low_complexity 1 108 0 6 890 325 306 48 76 chr5 40057108 40057253 -112480006 + MER5A DNA MER1_type 1 141 -48 6 890 452 309 78 53 chr5 40058587 40059061 -112478198 + L1ME2 LINE L1 5406 5891 -273 6 890 477 204 28 94 chr5 40059264 40059518 -112477741 - Lx9 LINE L1 -2 7642 7406 7 890 2856 78 0 83 chr5 40060249 40060717 -112476542 - L1_Mus1 LINE L1 0 6567 6170 7 890 212 59 29 0 chr5 40060838 40060872 -112476387 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 890 4855 57 28 2 chr5 40061079 40061632 -112475627 + L1_Mus1 LINE L1 5935 6491 -76 7 890 324 0 0 0 chr5 40061632 40061668 -112475591 + (CAGGG)n Simple_repeat Simple_repeat 5 40 0 7 890 4855 57 28 2 chr5 40061668 40061731 -112475528 + L1_Mus1 LINE L1 6492 6567 0 7 890 5373 96 1 0 chr5 40061799 40062520 -112474739 - Lx3_Mus LINE L1 0 7009 6288 7 890 2122 90 96 179 chr5 40062520 40063102 -112474157 + Lx3_Mus LINE L1 5730 6263 -746 7 890 874 277 52 34 chr5 40064252 40064521 -112472738 + B4A SINE B4 1 274 -18 7 890 303 161 0 0 chr5 40064565 40064621 -112472638 + (CA)n Simple_repeat Simple_repeat 2 57 0 7 890 4184 66 40 4 chr5 40065226 40065770 -112471489 + LTRIS2 LTR ERV1 1 564 0 7 890 1190 34 7 7 chr5 40066271 40066417 -112470842 + B1_Mus2 SINE Alu 2 147 0 7 890 219 133 0 0 chr5 40066417 40066462 -112470797 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 8 890 423 128 0 0 chr5 40066597 40066683 -112470576 + (TC)n Simple_repeat Simple_repeat 1 86 0 8 890 555 56 0 0 chr5 40066683 40066754 -112470505 + (TG)n Simple_repeat Simple_repeat 2 72 0 8 890 1298 285 38 19 chr5 40067103 40067475 -112469784 - MTE2b LTR MaLR 0 379 1 8 890 378 61 0 0 chr5 40067539 40067588 -112469671 + (TA)n Simple_repeat Simple_repeat 2 50 0 8 890 234 116 0 0 chr5 40067760 40067803 -112469456 + (TA)n Simple_repeat Simple_repeat 1 43 0 8 890 330 341 39 17 chr5 40067804 40067983 -112469276 + MER2 DNA MER2_type 121 303 -42 8 890 3236 51 5 0 chr5 40068218 40068612 -112468647 - MTA_Mm LTR MaLR 0 396 1 8 890 1094 278 87 6 chr5 40069412 40069723 -112467536 + MTE2b LTR MaLR 5 340 -39 8 890 243 146 0 0 chr5 40070358 40070399 -112466860 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 890 236 220 22 0 chr5 40070641 40070732 -112466527 + (CTCA)n Simple_repeat Simple_repeat 1 93 0 9 890 653 325 69 17 chr5 40071797 40072175 -112465084 - Lx8 LINE L1 -61 7412 7006 9 890 282 179 0 0 chr5 40072442 40072498 -112464761 + CT-rich Low_complexity Low_complexity 6 61 0 9 890 229 315 102 20 chr5 40072537 40072783 -112464476 - L1MC4 LINE L1 -574 7468 7203 9 890 195 234 21 21 chr5 40073199 40073247 -112464012 + L2b LINE L2 3313 3360 -15 9 890 259 176 77 19 chr5 40073655 40073707 -112463552 - MIRb SINE MIR -93 175 121 9 890 754 289 48 5 chr5 40074598 40074786 -112462473 - ID_B1 SINE B4 -19 205 10 9 890 524 317 92 67 chr5 40075867 40076181 -112461078 + MLT1A0 LTR MaLR 32 353 -12 9 890 477 0 0 0 chr5 40076196 40076249 -112461010 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 890 413 62 15 0 chr5 40076533 40076598 -112460661 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 9 890 244 336 33 33 chr5 40076810 40076930 -112460329 + L2a LINE L2 3281 3400 -26 1 890 1125 121 0 0 chr5 40076954 40077128 -112460131 + (GGAA)n Simple_repeat Simple_repeat 4 177 0 1 890 206 256 0 0 chr5 40077530 40077573 -112459686 - MIRb SINE MIR -29 239 197 1 890 1168 309 17 6 chr5 40077895 40078250 -112459009 - MLT1A0 LTR MaLR -5 360 2 1 890 680 366 166 8 chr5 40078319 40079044 -112458215 - L2 LINE L2 -337 3082 2244 1 890 228 387 25 74 chr5 40079161 40079323 -112457936 - LTR16B1 LTR ERVL -94 386 233 1 890 498 159 0 0 chr5 40079962 40080050 -112457209 + C-rich Low_complexity Low_complexity 4 91 0 1 890 263 175 18 0 chr5 40080045 40080102 -112457157 + CT-rich Low_complexity Low_complexity 2 59 0 1 890 4698 123 45 5 chr5 40080123 40080226 -112457033 - Lx3B LINE L1 -3 6970 6854 1 890 507 33 0 0 chr5 40080226 40080287 -112456972 + (CCA)n Simple_repeat Simple_repeat 1 61 0 1 890 4698 123 45 5 chr5 40080287 40080919 -112456340 - Lx3B LINE L1 -120 6853 6207 1 890 459 278 71 47 chr5 40081462 40081715 -112455544 - MER112 DNA MER1_type -2 259 1 1 890 1442 44 0 11 chr5 40082222 40082406 -112454853 - L1_Mus1 LINE L1 -1 6566 6385 1 890 234 254 0 0 chr5 40082933 40082988 -112454271 + CT-rich Low_complexity Low_complexity 2 56 0 1 890 316 326 43 43 chr5 40083354 40083492 -112453767 - B1F SINE Alu -11 138 1 1 890 279 308 37 117 chr5 40083492 40083516 -112453743 - ID_B1 SINE B4 -11 213 65 1 890 615 361 7 7 chr5 40083520 40083802 -112453457 - B4A SINE B4 -10 282 1 1 890 379 320 31 0 chr5 40083812 40083909 -112453350 - PB1D10 SINE Alu -8 109 10 1 890 780 11 0 0 chr5 40084868 40084957 -112452302 + (TG)n Simple_repeat Simple_repeat 2 90 0 1 890 237 275 62 0 chr5 40084986 40085066 -112452193 - Lx7 LINE L1 -1 7695 7611 1 890 525 235 35 49 chr5 40085063 40085206 -112452053 - Lx7 LINE L1 -343 7353 7213 1 890 210 71 0 0 chr5 40085981 40086009 -112451250 + (TCTCC)n Simple_repeat Simple_repeat 3 30 0 1 890 1879 187 24 70 chr5 40086107 40086562 -112450697 - RMER10A LTR ERVL -1 441 8 1 890 572 331 76 53 chr5 40086587 40086944 -112450315 - MLT1D LTR MaLR -122 383 19 1 890 296 262 126 0 chr5 40088529 40088626 -112448633 + Lx8 LINE L1 7113 7222 -251 1 890 515 90 13 0 chr5 40088626 40088704 -112448555 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 890 523 292 214 25 chr5 40089947 40090274 -112446985 + MTD LTR MaLR 5 404 -15 1 890 1903 73 4 0 chr5 40090604 40090852 -112446407 + L1_Mus1 LINE L1 6319 6567 0 1 890 2300 189 44 33 chr5 40090916 40091292 -112445967 + RLTR11A2 LTR ERVK 2 386 -141 1 890 1907 38 4 8 chr5 40091292 40091533 -112445726 + L1Md_F3 LINE L1 6344 6583 -1 1 890 2300 189 44 33 chr5 40091533 40091676 -112445583 + RLTR11A2 LTR ERVK 387 527 0 1 890 285 315 61 72 chr5 40091692 40091873 -112445386 - MER73 LTR ERVL -104 540 362 1 890 743 332 43 25 chr5 40091887 40092168 -112445091 - MER73 LTR ERVL -351 293 8 1 890 1180 68 0 0 chr5 40092290 40092437 -112444822 - B1_Mus2 SINE Alu 0 147 1 1 890 640 291 66 0 chr5 40093750 40093946 -112443313 - B3 SINE B2 -6 210 2 1 890 864 29 0 0 chr5 40093978 40094081 -112443178 + (TC)n Simple_repeat Simple_repeat 2 104 0 1 890 457 325 19 72 chr5 40096045 40096254 -112441005 + MER3 DNA MER1_type 7 204 -5 1 890 240 143 0 0 chr5 40096694 40096736 -112440523 + (TATATG)n Simple_repeat Simple_repeat 2 43 0 1 890 5950 99 5 7 chr5 40097541 40098392 -112438867 - L1_Mus3 LINE L1 -7 6631 5783 1 890 6354 63 46 5 chr5 40098392 40099289 -112437970 - L1Md_F3 LINE L1 -6 6578 5645 1 890 305 360 93 27 chr5 40099634 40099891 -112437368 + MLT1E2 LTR MaLR 146 419 -208 1 890 722 362 9 18 chr5 40099987 40100212 -112437047 - ORR1D2 LTR MaLR -113 257 35 1 890 261 355 13 0 chr5 40100559 40100635 -112436624 - RSINE1 SINE B4 -83 82 6 1 890 370 260 37 66 chr5 40100809 40100945 -112436314 + MLT1E2 LTR MaLR 493 624 -3 1 890 255 403 67 8 chr5 40101203 40101441 -112435818 - LTR16A LTR ERVL -13 438 187 1 890 218 56 0 27 chr5 40101633 40101670 -112435589 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 890 2411 187 81 138 chr5 40102001 40102366 -112434893 - RMER6C LTR ERVK 0 690 342 1 890 2198 16 0 0 chr5 40102366 40102616 -112434643 - L1Md_A LINE L1 0 6582 6333 1 890 2411 187 81 138 chr5 40102616 40102975 -112434284 - RMER6C LTR ERVK -349 341 7 1 890 248 420 43 0 chr5 40103045 40103183 -112434076 - B3A SINE B2 -45 153 10 1 890 854 281 105 15 chr5 40103852 40104185 -112433074 + MLT1B LTR MaLR 28 390 0 1 890 1015 281 44 38 chr5 40104513 40104880 -112432379 - MTE2a LTR MaLR -2 377 9 1 890 344 369 49 16 chr5 40105766 40106011 -112431248 + MLT1C LTR MaLR 213 465 -2 1 890 180 352 63 8 chr5 40107814 40107940 -112429319 + MIRb SINE MIR 93 225 -43 1 111 582 54 0 0 chr5 40108010 40108084 -112429175 + (CAAAA)n Simple_repeat Simple_repeat 5 78 0 1 891 254 314 52 75 chr5 40109225 40109359 -112427900 - B3 SINE B2 0 216 86 1 891 1156 82 0 0 chr5 40109447 40109594 -112427665 + B1_Mm SINE Alu 1 147 0 1 891 1272 57 6 28 chr5 40109950 40110130 -112427129 - L1_Mus1 LINE L1 -188 6379 6204 1 891 788 118 8 0 chr5 40110130 40110257 -112427002 + L1_Mus2 LINE L1 6439 6566 0 1 891 245 219 109 0 chr5 40110673 40110737 -112426522 + Tigger7 DNA MER2_type 2377 2447 -44 1 891 5190 173 20 26 chr5 40111572 40113007 -112424252 + L1Md_T LINE L1 99 1205 -5411 1 891 34831 31 0 0 chr5 40113013 40117430 -112419829 + L1Md_T LINE L1 1170 5586 -297 1 891 7960 58 0 0 chr5 40117430 40118426 -112418833 + L1Md_T LINE L1 5587 6582 0 1 891 245 259 45 45 chr5 40118521 40118610 -112418649 - L2 LINE L2 -995 2424 2336 1 891 517 327 127 29 chr5 40118627 40119005 -112418254 - MTD LTR MaLR 0 419 5 1 891 253 316 65 20 chr5 40119721 40119898 -112417361 - MIRb SINE MIR -62 200 15 1 891 211 328 61 9 chr5 40120537 40120629 -112416630 - MIR3 SINE MIR -87 121 24 1 891 423 0 0 0 chr5 40120629 40120676 -112416583 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 891 211 335 49 22 chr5 40120676 40120709 -112416550 - MIR3 SINE MIR -241 35 3 1 891 189 286 105 23 chr5 40120794 40120880 -112416379 - L3 LINE CR1 -3518 971 879 1 891 200 386 38 38 chr5 40121378 40121510 -112415749 + MIR SINE MIR 15 146 -116 1 891 390 330 153 81 chr5 40121652 40122097 -112415162 - MLT2F LTR ERVL -1 662 186 1 891 267 381 57 63 chr5 40122415 40122715 -112414544 - MLT1J LTR MaLR -115 397 100 1 891 570 29 0 0 chr5 40122894 40122962 -112414297 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 891 334 356 70 9 chr5 40123475 40123679 -112413580 + MIRb SINE MIR 10 215 -53 1 891 422 79 16 0 chr5 40124122 40124185 -112413074 + (GGA)n Simple_repeat Simple_repeat 3 66 0 1 891 337 307 79 44 chr5 40125397 40125737 -112411522 - MLT1D LTR MaLR 0 505 75 1 891 753 319 101 18 chr5 40125826 40126037 -112411222 + MLT1B LTR MaLR 25 244 -146 1 891 534 16 0 0 chr5 40126037 40126100 -112411159 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 891 753 319 101 18 chr5 40126100 40126226 -112411033 + MLT1B LTR MaLR 245 389 -1 1 891 196 357 14 54 chr5 40126422 40126496 -112410763 + MIR SINE MIR 51 121 -87 1 891 976 182 119 5 chr5 40126605 40126798 -112410461 - ORR1C1 LTR MaLR 0 378 164 1 891 344 172 0 8 chr5 40126801 40126918 -112410341 + GA-rich Low_complexity Low_complexity 2 117 0 1 891 765 241 46 6 chr5 40126918 40127093 -112410166 - ORR1C1 LTR MaLR -196 182 1 1 891 478 315 17 95 chr5 40127374 40127553 -112409706 + RSINE1 SINE B4 1 165 0 1 891 993 59 0 0 chr5 40127553 40127606 -112409653 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 891 926 116 0 7 chr5 40127606 40127754 -112409505 + (GAA)n Simple_repeat Simple_repeat 3 149 0 1 891 993 59 0 0 chr5 40127754 40127835 -112409424 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 891 466 312 139 19 chr5 40128856 40129056 -112408203 + B3A SINE B2 6 212 -4 1 891 259 189 88 70 chr5 40130080 40130137 -112407122 + ORR1D2 LTR MaLR 15 72 -298 1 891 4765 48 5 8 chr5 40130500 40131095 -112406164 - L1Md_F2 LINE L1 -2 6580 5988 1 891 2012 247 84 35 chr5 40131139 40131469 -112405790 - RMER20B LTR ERVK -18 609 256 1 891 308 24 0 24 chr5 40131469 40131511 -112405748 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 891 2012 247 84 35 chr5 40131511 40131751 -112405508 - RMER20B LTR ERVK -372 255 12 1 891 679 247 101 4 chr5 40132243 40132491 -112404768 - RCHARR1 DNA MER1_type -1 973 702 1 891 33 0 0 0 chr5 40132605 40132638 -112404621 + AT_rich Low_complexity Low_complexity 1 33 0 1 891 291 222 0 0 chr5 40132870 40132951 -112404308 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 891 1143 162 4 124 chr5 40133461 40133735 -112403524 - ORR1A4 LTR MaLR -88 241 1 1 891 641 307 0 6 chr5 40134255 40134419 -112402840 - RSINE1 SINE B4 0 165 3 1 891 23 0 0 0 chr5 40135070 40135093 -112402166 + AT_rich Low_complexity Low_complexity 1 23 0 1 891 306 308 77 0 chr5 40135876 40136019 -112401240 - MLT1D LTR MaLR -8 497 344 1 891 289 342 40 83 chr5 40136078 40136330 -112400929 - MLT1D LTR MaLR -259 246 6 1 891 531 175 51 26 chr5 40136824 40136941 -112400318 + RMER19C LTR ERVK 1 120 -491 1 891 260 275 73 132 chr5 40138615 40138766 -112398493 + ORR1D2 LTR MaLR 46 187 -183 1 891 222 171 0 0 chr5 40139309 40139350 -112397909 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 891 486 235 66 25 chr5 40139824 40139946 -112397313 - B1F SINE Alu -1 148 22 1 891 240 86 0 0 chr5 40140014 40140049 -112397210 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 891 255 253 0 0 chr5 40140062 40140157 -112397102 + GA-rich Low_complexity Low_complexity 2 96 0 1 891 1898 154 29 0 chr5 40140167 40140479 -112396780 + ORR1A2 LTR MaLR 7 327 0 1 891 7786 151 83 30 chr5 40140479 40141568 -112395691 + ORR1A2-int LTR MaLR 1 1194 -769 1 891 3928 111 2 16 chr5 40141568 40142143 -112395116 + RMER2 LTR ERV1 1 567 0 1 891 7786 151 83 30 chr5 40142143 40142690 -112394569 + ORR1A2-int LTR MaLR 1195 1724 -239 1 891 597 40 0 0 chr5 40143206 40143282 -112393977 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 891 2130 192 179 8 chr5 40143312 40143832 -112393427 + RMER19C LTR ERVK 3 611 0 1 891 919 282 86 0 chr5 40143836 40144056 -112393203 - B4A SINE B4 -44 248 10 1 891 2056 199 34 24 chr5 40145226 40145639 -112391620 + MTC LTR MaLR 3 419 -2 2 891 971 257 45 31 chr5 40146622 40146976 -112390283 - RLTR10D LTR ERVK 0 359 1 2 891 2178 89 86 0 chr5 40148474 40148801 -112388458 + IAPEY2_LTR LTR ERVK 1 355 -2 2 891 665 313 110 39 chr5 40151182 40151591 -112385668 + MTE-int LTR MaLR 1107 1544 -36 2 891 640 330 12 0 chr5 40151887 40152060 -112385199 + B3A SINE B2 2 176 -22 2 891 486 0 0 0 chr5 40152069 40152123 -112385136 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 891 717 229 92 14 chr5 40152798 40153015 -112384244 + Lx5 LINE L1 6817 7050 0 2 891 27 29 0 0 chr5 40154247 40154281 -112382978 + AT_rich Low_complexity Low_complexity 1 34 0 2 891 237 33 0 0 chr5 40154401 40154431 -112382828 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 2 891 330 335 46 74 chr5 40154457 40154673 -112382586 - L1M4 LINE L1 -541 5643 5434 2 891 997 247 89 63 chr5 40154728 40155392 -112381867 - L1M4 LINE L1 -778 5368 4694 2 891 237 108 0 0 chr5 40155596 40155633 -112381626 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 891 344 403 68 16 chr5 40155734 40155894 -112381365 - B4 SINE B4 -58 166 2 2 891 436 322 53 9 chr5 40155915 40156235 -112381024 - L1M4 LINE L1 -1740 4406 4073 2 891 546 314 131 3 chr5 40156284 40156597 -112380662 + Lx8 LINE L1 7120 7472 -1 2 891 246 377 8 42 chr5 40156743 40156862 -112380397 - B4 SINE B4 -6 286 172 2 891 340 300 103 82 chr5 40157002 40157554 -112379705 - L1M4 LINE L1 -2303 3843 3280 2 891 22 35 0 0 chr5 40157657 40157686 -112379573 + AT_rich Low_complexity Low_complexity 1 29 0 2 891 287 333 38 38 chr5 40157751 40157882 -112379377 - Charlie4z DNA MER1_type -35 132 2 2 891 1331 261 42 12 chr5 40158290 40158697 -112378562 + MTD LTR MaLR 1 419 0 2 891 311 113 19 0 chr5 40158725 40158778 -112378481 + (TCTCC)n Simple_repeat Simple_repeat 3 56 0 2 891 951 112 0 0 chr5 40158793 40158954 -112378305 + (TC)n Simple_repeat Simple_repeat 2 162 0 2 891 407 269 42 56 chr5 40158965 40159107 -112378152 - MER2 DNA MER2_type -78 267 128 2 891 294 148 0 0 chr5 40160812 40160866 -112376393 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 891 387 92 0 0 chr5 40160867 40160932 -112376327 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 891 508 201 7 35 chr5 40161036 40161180 -112376079 + RMER1B Other Other 916 1055 -11 2 891 243 103 0 0 chr5 40161186 40161225 -112376034 + (CAA)n Simple_repeat Simple_repeat 1 39 0 2 891 476 53 0 26 chr5 40161269 40161347 -112375912 + L1Md_F2 LINE L1 6501 6576 -6 2 891 914 320 65 69 chr5 40161728 40162204 -112375055 - MLT2B1 LTR ERVL -46 474 1 2 891 253 228 52 9 chr5 40162408 40162523 -112374736 + L1MA7 LINE L1 6168 6287 -4 2 891 23 0 0 0 chr5 40162693 40162716 -112374543 + AT_rich Low_complexity Low_complexity 1 23 0 2 891 6282 180 68 11 chr5 40164120 40165582 -112371677 + Lx4B LINE L1 5507 7055 -3 2 891 189 364 101 36 chr5 40166136 40166304 -112370955 + MIRc SINE MIR 36 214 -54 2 891 25 0 0 0 chr5 40167356 40167381 -112369878 + AT_rich Low_complexity Low_complexity 1 25 0 2 891 5044 69 0 3 chr5 40168995 40169637 -112367622 - L1_Mus2 LINE L1 0 6566 5927 2 891 8452 116 14 5 chr5 40169637 40171157 -112366102 - L1Md_F LINE L1 -3270 2613 1086 2 891 1237 42 0 24 chr5 40171157 40171327 -112365932 + L1Md_F3 LINE L1 6403 6568 -16 2 891 2649 178 7 57 chr5 40171327 40171762 -112365497 - L1Md_F LINE L1 -5531 1085 667 2 891 408 295 91 26 chr5 40171861 40172188 -112365071 - L1MA9 LINE L1 -82 6230 5874 2 891 542 255 22 17 chr5 40172185 40172395 -112364864 - Lx4B LINE L1 -8 7050 6759 2 891 208 146 59 59 chr5 40173232 40173283 -112363976 + MIR SINE MIR 176 226 -36 2 891 202 75 24 48 chr5 40173552 40173594 -112363665 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 2 891 393 39 0 0 chr5 40173946 40173997 -112363262 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 891 598 305 21 0 chr5 40174214 40174355 -112362904 + RSINE1 SINE B4 5 148 -17 2 891 404 86 14 0 chr5 40175074 40175144 -112362115 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 891 621 0 0 0 chr5 40175144 40175212 -112362047 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 891 315 255 73 36 chr5 40175650 40175760 -112361499 + Charlie16a DNA MER1_type 135 248 -94 2 891 789 127 7 26 chr5 40176548 40176702 -112360557 + C-rich Low_complexity Low_complexity 5 155 0 2 891 238 122 24 0 chr5 40176702 40176743 -112360516 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 2 891 321 318 37 22 chr5 40176908 40177043 -112360216 - RMER15 LTR ERVL -15 560 424 2 891 1277 220 141 27 chr5 40177198 40177637 -112359622 + RMER19B LTR ERVK 150 673 -229 2 891 310 300 44 51 chr5 40179751 40179909 -112357350 - MER105 DNA DNA -23 181 25 2 891 195 167 0 0 chr5 40180273 40180315 -112356944 + T-rich Low_complexity Low_complexity 1 42 0 2 891 3697 135 39 29 chr5 40180320 40180983 -112356276 - Lx2 LINE L1 -1 6996 6327 2 891 389 337 102 72 chr5 40181025 40181358 -112355901 + MLT2C1 LTR ERVL 55 397 0 2 891 182 65 0 61 chr5 40182219 40182252 -112355007 + (TTCTC)n Simple_repeat Simple_repeat 4 34 0 2 891 243 0 0 0 chr5 40182790 40182817 -112354442 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 891 1632 219 79 18 chr5 40182989 40183380 -112353879 - MTD LTR MaLR -4 415 1 2 891 736 292 8 69 chr5 40183412 40183673 -112353586 + B4 SINE B4 4 248 -44 2 891 1159 210 48 248 chr5 40183674 40183895 -112353364 - RLTR41 LTR ERV1 0 446 221 2 891 216 0 0 0 chr5 40183895 40183919 -112353340 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2 891 1159 210 48 248 chr5 40183919 40184254 -112353005 - RLTR41 LTR ERV1 -226 220 1 2 891 570 67 0 0 chr5 40184290 40184365 -112352894 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 891 199 331 42 42 chr5 40185280 40185447 -112351812 + L2b LINE L2 1695 1861 -1558 2 891 669 229 7 53 chr5 40185748 40185900 -112351359 - URR1B DNA MER1_type -80 145 1 2 891 194 305 82 31 chr5 40185993 40186091 -112351168 + L2b LINE L2 2757 2859 -560 2 891 204 418 45 0 chr5 40188907 40189017 -112348242 + L2b LINE L2 3261 3375 0 2 891 1681 203 13 8 chr5 40190833 40191206 -112346053 - Lx7 LINE L1 -225 5655 5281 2 891 5954 245 81 41 chr5 40191207 40193161 -112344098 + Lx7 LINE L1 5661 7692 -4 2 891 530 331 59 33 chr5 40193208 40193349 -112343910 + RSINE1 SINE B4 9 155 -10 2 891 243 0 0 0 chr5 40193349 40193376 -112343883 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 2 891 530 331 59 33 chr5 40193376 40193387 -112343872 + RSINE1 SINE B4 156 165 0 2 891 188 314 0 0 chr5 40193614 40193665 -112343594 + L2b LINE L2 3036 3086 -289 2 891 849 152 151 6 chr5 40194066 40194232 -112343027 - URR1A DNA MER1_type -36 190 1 2 891 450 0 0 0 chr5 40194341 40194391 -112342868 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 891 450 0 0 0 chr5 40194391 40194440 -112342819 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 891 642 321 67 18 chr5 40196846 40197071 -112340188 + B4 SINE B4 6 241 -51 2 891 633 38 0 0 chr5 40198501 40198581 -112338678 + (GA)n Simple_repeat Simple_repeat 2 81 0 2 891 204 375 0 0 chr5 40199161 40199233 -112338026 - L2c LINE L2 -13 3374 3303 2 891 48 0 0 0 chr5 40199682 40199730 -112337529 + AT_rich Low_complexity Low_complexity 1 48 0 2 891 468 0 0 0 chr5 40200095 40200147 -112337112 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 891 229 279 0 29 chr5 40201566 40201636 -112335623 + GA-rich Low_complexity Low_complexity 4 71 0 2 891 4501 133 16 35 chr5 40201685 40203048 -112334211 + L1Md_F LINE L1 204 1535 -4348 2 891 35093 26 4 7 chr5 40203050 40208221 -112329038 + L1Md_A LINE L1 439 5586 -297 2 891 8243 41 1 1 chr5 40208222 40209216 -112328043 + L1Md_A LINE L1 5588 6581 -1 2 891 2339 79 12 9 chr5 40209226 40209571 -112327688 + L1Md_F2 LINE L1 5243 5588 -295 2 891 6711 105 16 6 chr5 40209572 40210555 -112326704 + L1Md_F2 LINE L1 5590 6582 0 2 891 375 60 0 0 chr5 40210783 40210833 -112326426 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 891 217 328 15 0 chr5 40211818 40211885 -112325374 - B4 SINE B4 -214 78 11 2 891 2323 91 6 0 chr5 40211975 40212304 -112324955 - Lx3_Mus LINE L1 -1 5885 5555 2 891 7433 111 27 16 chr5 40212305 40213471 -112323788 + Lx3_Mus LINE L1 5831 7008 -1 2 891 333 255 9 18 chr5 40213501 40213613 -112323646 + (CA)n Simple_repeat Simple_repeat 2 112 0 2 891 265 339 34 8 chr5 40214093 40214212 -112323047 - MIR SINE MIR -55 207 86 2 891 981 152 0 0 chr5 40214425 40214596 -112322663 - Lx5 LINE L1 -1218 5832 5662 2 891 244 316 31 100 chr5 40215389 40215519 -112321740 - MER58A DNA MER1_type -98 126 6 2 891 270 367 59 34 chr5 40215533 40215865 -112321394 - ORR1E LTR MaLR -1 378 20 2 891 180 111 0 0 chr5 40216150 40216177 -112321082 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 2 891 654 350 73 17 chr5 40216454 40216811 -112320448 + MER54A LTR ERVL 60 436 -465 2 891 1023 180 61 9 chr5 40217127 40217340 -112319919 + URR1B DNA MER1_type 2 225 0 2 891 228 336 26 17 chr5 40217409 40217524 -112319735 - L2c LINE L2 -246 3141 3026 2 891 486 0 0 0 chr5 40218100 40218154 -112319105 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 891 623 278 78 10 chr5 40218854 40219047 -112318212 - B3 SINE B2 -2 214 9 2 891 459 202 0 0 chr5 40219322 40219421 -112317838 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 891 3935 46 0 0 chr5 40219510 40219985 -112317274 + L1Md_F2 LINE L1 6096 6570 -12 2 891 3159 112 52 27 chr5 40220345 40220859 -112316400 + L1_Mus3 LINE L1 6111 6637 -1 2 891 233 309 56 42 chr5 40221102 40221173 -112316086 - ID4_ SINE ID -11 72 1 2 891 508 328 83 73 chr5 40221551 40221621 -112315638 + B4A SINE B4 1 83 -209 2 891 252 0 0 0 chr5 40221621 40221649 -112315610 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 891 508 328 83 73 chr5 40221649 40221867 -112315392 + B4A SINE B4 84 292 0 2 891 638 152 23 17 chr5 40221896 40222055 -112315204 + (CATA)n Simple_repeat Simple_repeat 4 163 0 2 891 225 65 0 0 chr5 40222055 40222086 -112315173 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 2 891 638 152 23 17 chr5 40222086 40222100 -112315159 + (CATA)n Simple_repeat Simple_repeat 4 17 0 2 891 591 201 0 0 chr5 40222121 40222290 -112314969 + (CA)n Simple_repeat Simple_repeat 2 170 0 2 891 449 228 6 0 chr5 40222307 40222474 -112314785 + (CA)n Simple_repeat Simple_repeat 2 169 0 2 891 21 0 0 0 chr5 40224772 40224793 -112312466 + AT_rich Low_complexity Low_complexity 1 21 0 3 891 360 0 0 0 chr5 40225602 40225642 -112311617 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 891 318 322 474 45 chr5 40226485 40226688 -112310571 - B4 SINE B4 0 292 3 3 891 307 346 121 38 chr5 40226911 40227356 -112309903 + L2 LINE L2 1820 2301 -1118 3 891 202 351 26 35 chr5 40227628 40227743 -112309516 + L2 LINE L2 2633 2746 -673 3 891 634 314 111 28 chr5 40227757 40228117 -112309142 + MLT1B LTR MaLR 1 390 0 3 891 249 33 0 0 chr5 40230612 40230642 -112306617 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 891 249 173 19 37 chr5 40230648 40230702 -112306557 + MurSatRep1 Unknown Unknown 226 278 -1859 3 891 528 89 0 0 chr5 40230947 40231026 -112306233 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 891 495 0 0 0 chr5 40231023 40231078 -112306181 + (GAA)n Simple_repeat Simple_repeat 3 57 0 3 891 794 257 346 3 chr5 40231129 40231432 -112305827 - Lx9 LINE L1 -6 7638 7232 3 891 545 354 148 17 chr5 40234156 40234575 -112302684 - MLT1D LTR MaLR -5 500 27 3 891 334 214 79 0 chr5 40234580 40234669 -112302590 - HAL1-2a_MD LINE L1 -584 2440 2345 3 891 198 0 0 0 chr5 40234848 40234870 -112302389 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 891 326 276 122 108 chr5 40235031 40235319 -112301940 + B4 SINE B4 1 292 0 3 891 401 271 17 8 chr5 40235650 40235769 -112301490 + Lx9 LINE L1 7348 7467 -177 3 891 716 99 9 0 chr5 40235770 40235881 -112301378 + (TA)n Simple_repeat Simple_repeat 2 113 0 3 891 328 189 53 0 chr5 40235881 40235976 -112301283 + Lx9 LINE L1 7545 7644 0 3 891 222 37 0 0 chr5 40236199 40236226 -112301033 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 891 452 312 86 6 chr5 40236261 40236435 -112300824 - B3A SINE B2 -10 188 1 3 891 1572 73 0 14 chr5 40236440 40236661 -112300598 + L1Md_F2 LINE L1 6353 6570 -12 3 891 229 432 90 0 chr5 40237357 40237512 -112299747 + LTR33 LTR ERVL 10 178 -337 3 891 486 350 53 16 chr5 40237705 40237952 -112299307 + RCHARR1 DNA MER1_type 1 256 -718 3 891 1339 277 66 11 chr5 40238007 40238463 -112298796 + RCHARR1 DNA MER1_type 490 970 -4 3 891 307 261 111 7 chr5 40238468 40238603 -112298656 - L2a LINE L2 -71 3355 3207 3 891 189 360 177 0 chr5 40238782 40238946 -112298313 - L2a LINE L2 -359 3060 2868 3 892 258 364 32 16 chr5 40239183 40239306 -112297953 - L2a LINE L2 -831 2588 2464 3 892 6082 3 0 0 chr5 40240598 40241305 -112295954 + L1Md_A LINE L1 4880 5586 -297 3 892 9066 2 0 0 chr5 40241305 40242329 -112294930 + L1Md_A LINE L1 5587 6582 0 3 892 244 370 105 13 chr5 40242660 40242898 -112294361 + L2 LINE L2 1676 1935 -1484 3 892 202 327 28 28 chr5 40242939 40243046 -112294213 + L2 LINE L2 2036 2142 -1277 3 892 2071 206 30 8 chr5 40243470 40243867 -112293392 + MTC LTR MaLR 8 413 -8 3 892 1020 292 120 19 chr5 40243942 40244308 -112292951 - MTD LTR MaLR -14 405 3 3 892 519 299 97 20 chr5 40244558 40244752 -112292507 + B3A SINE B2 10 203 -13 3 892 462 36 0 0 chr5 40244761 40244817 -112292442 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 892 436 360 7 7 chr5 40245247 40245387 -112291872 - RSINE1 SINE B4 -20 145 6 3 892 597 236 53 67 chr5 40246692 40246842 -112290417 + B1_Mur1 SINE Alu 2 149 0 3 892 216 0 0 0 chr5 40247155 40247179 -112290080 + (T)n Simple_repeat Simple_repeat 1 24 0 3 892 220 299 39 13 chr5 40247196 40247274 -112289985 - L2c LINE L2 -227 3160 3081 3 892 310 303 40 20 chr5 40247714 40247815 -112289444 + MIRc SINE MIR 48 150 -118 3 892 243 188 0 0 chr5 40248889 40248937 -112288322 + T-rich Low_complexity Low_complexity 1 48 0 3 892 1102 283 96 6 chr5 40249509 40249843 -112287416 - ORR1D2 LTR MaLR -6 364 1 3 892 2946 99 0 0 chr5 40250063 40250488 -112286771 - L1_Mus1 LINE L1 -231 5652 5228 3 892 6839 68 4 0 chr5 40250486 40251401 -112285858 + L1_Mus1 LINE L1 5649 6567 0 3 892 284 257 0 13 chr5 40251993 40252068 -112285191 + CT-rich Low_complexity Low_complexity 3 76 0 3 892 26 0 0 0 chr5 40252137 40252163 -112285096 + AT_rich Low_complexity Low_complexity 1 26 0 3 892 186 43 0 0 chr5 40252281 40252304 -112284955 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 892 527 328 48 18 chr5 40252304 40252632 -112284627 + Lx9 LINE L1 6890 7329 -315 3 892 2166 142 0 122 chr5 40253442 40253916 -112283343 + L1_Mus4 LINE L1 6219 6634 -2 3 892 717 129 0 0 chr5 40253916 40254032 -112283227 + (GGA)n Simple_repeat Simple_repeat 2 117 0 3 892 465 339 81 49 chr5 40254471 40254778 -112282481 + MLT1B LTR MaLR 46 362 -28 3 892 210 37 0 0 chr5 40256581 40256608 -112280651 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 892 326 247 9 142 chr5 40258584 40258697 -112278562 + MTEb LTR MaLR 269 366 -13 3 892 24 0 0 0 chr5 40258742 40258766 -112278493 + AT_rich Low_complexity Low_complexity 1 24 0 3 892 335 329 47 71 chr5 40259053 40259223 -112278036 + MER5A1 DNA MER1_type 1 166 0 3 892 3820 218 48 7 chr5 40259367 40260535 -112276724 + L1_Mur3 LINE L1 666 1868 -4012 3 892 261 0 0 0 chr5 40260535 40260564 -112276695 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 3 892 3820 193 61 10 chr5 40260564 40260742 -112276517 + L1_Mur3 LINE L1 1869 2055 -3825 3 892 352 0 42 0 chr5 40260742 40260790 -112276469 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 892 3820 193 61 10 chr5 40260790 40260964 -112276295 + L1_Mur3 LINE L1 2056 2252 -3628 3 892 1016 279 57 15 chr5 40260976 40261377 -112275882 + Lx7 LINE L1 5637 6054 -1642 3 892 943 185 83 19 chr5 40261461 40261725 -112275534 + Lx7 LINE L1 7416 7696 0 3 892 376 344 172 24 chr5 40263077 40263327 -112273932 + B4 SINE B4 4 290 -2 3 892 27 29 0 0 chr5 40263418 40263452 -112273807 + AT_rich Low_complexity Low_complexity 1 34 0 3 892 307 292 97 30 chr5 40263562 40263696 -112273563 + B1F SINE Alu 1 143 -6 3 892 516 293 264 17 chr5 40264189 40264484 -112272775 + ORR1D2 LTR MaLR 3 370 0 3 892 1855 148 24 59 chr5 40265424 40265762 -112271497 - ORR1A3 LTR MaLR 0 326 1 3 892 1654 115 10 77 chr5 40265762 40266074 -112271185 - ORR1A3-int LTR MaLR 0 1963 1673 3 892 496 274 34 79 chr5 40266099 40266277 -112270982 - B4A SINE B4 0 292 123 3 892 455 330 106 22 chr5 40267061 40267241 -112270018 - B4A SINE B4 -78 214 20 3 892 406 0 0 36 chr5 40267364 40267420 -112269839 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 892 599 349 46 15 chr5 40267423 40267682 -112269577 - B4A SINE B4 -25 267 1 3 892 4424 81 0 44 chr5 40267855 40268488 -112268771 - L1_Mus2 LINE L1 -1 6565 5961 3 892 5411 89 11 1 chr5 40269115 40269847 -112267412 + Lx3_Mus LINE L1 6271 7009 0 3 892 201 135 54 0 chr5 40269892 40269929 -112267330 + (CAGAGA)n Simple_repeat Simple_repeat 6 44 0 3 892 227 393 52 0 chr5 40269980 40270115 -112267144 + Lx8 LINE L1 7169 7310 -163 3 892 811 254 84 8 chr5 40270723 40270975 -112266284 - MTE2a LTR MaLR 0 379 118 3 892 21 0 0 0 chr5 40271384 40271405 -112265854 + AT_rich Low_complexity Low_complexity 1 21 0 3 892 690 278 188 22 chr5 40271582 40271902 -112265357 - ORR1D1 LTR MaLR -4 370 3 3 892 5563 61 3 20 chr5 40272603 40273341 -112263918 + L1Md_F2 LINE L1 5857 6581 -1 3 892 492 18 0 0 chr5 40273964 40274021 -112263238 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 892 378 0 0 0 chr5 40274579 40274621 -112262638 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 3 892 465 183 170 43 chr5 40275007 40275076 -112262183 + Lx9 LINE L1 7411 7479 -165 3 892 333 47 0 0 chr5 40275076 40275119 -112262140 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 892 465 183 170 43 chr5 40275119 40275237 -112262022 + Lx9 LINE L1 7480 7621 -23 3 892 21 0 0 0 chr5 40275877 40275898 -112261361 + AT_rich Low_complexity Low_complexity 1 21 0 3 892 21 0 0 0 chr5 40275908 40275929 -112261330 + AT_rich Low_complexity Low_complexity 1 21 0 3 892 228 214 0 0 chr5 40276064 40276120 -112261139 + (TATG)n Simple_repeat Simple_repeat 1 56 0 3 892 283 302 37 28 chr5 40276205 40276314 -112260945 - Lx9 LINE L1 -274 7370 7261 3 892 282 29 0 0 chr5 40278172 40278207 -112259052 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 892 495 0 0 0 chr5 40278207 40278261 -112258998 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 892 486 114 0 0 chr5 40278493 40278572 -112258687 + (CATA)n Simple_repeat Simple_repeat 3 81 0 3 892 228 135 0 0 chr5 40279205 40279242 -112258017 + (CAT)n Simple_repeat Simple_repeat 2 38 0 3 892 5829 211 82 14 chr5 40279243 40279433 -112257826 - Lx5 LINE L1 0 7050 6823 3 892 360 111 0 0 chr5 40279433 40279496 -112257763 + (CAGG)n Simple_repeat Simple_repeat 4 66 0 3 892 5829 211 82 14 chr5 40279496 40280675 -112256584 - Lx5 LINE L1 -228 6822 5587 3 892 9955 176 23 56 chr5 40280697 40281112 -112256147 - L1_Mur2 LINE L1 -2414 3463 3058 3 892 585 0 0 0 chr5 40281112 40281177 -112256082 + (TCC)n Simple_repeat Simple_repeat 3 67 0 3 892 9955 176 23 56 chr5 40281177 40282188 -112255071 - L1_Mur2 LINE L1 -2820 3057 2065 3 892 504 0 0 0 chr5 40282188 40282244 -112255015 + (TAG)n Simple_repeat Simple_repeat 3 58 0 3 892 9955 178 23 55 chr5 40282244 40283175 -112254084 - L1_Mur2 LINE L1 -3813 2064 1183 3 892 883 0 9 9 chr5 40283175 40283283 -112253976 + (TCTA)n Simple_repeat Simple_repeat 3 110 0 3 892 1451 223 51 15 chr5 40283283 40283527 -112253732 - L1_Mur2 LINE L1 -5904 1182 921 3 892 383 314 20 82 chr5 40284818 40284964 -112252295 - ID_B1 SINE B4 -4 220 84 3 892 182 267 0 0 chr5 40287002 40287047 -112250212 + L2a LINE L2 3377 3421 -5 3 892 1334 254 68 20 chr5 40287293 40287647 -112249612 + MTE2b LTR MaLR 6 376 -3 3 892 274 237 10 10 chr5 40288009 40288107 -112249152 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 3 892 26 74 0 0 chr5 40288240 40288294 -112248965 + AT_rich Low_complexity Low_complexity 1 54 0 3 892 364 350 81 22 chr5 40288646 40288868 -112248391 + Tigger7 DNA MER2_type 137 371 -2120 3 892 220 292 131 29 chr5 40289672 40289820 -112247439 - MIRb SINE MIR -27 241 74 3 892 512 15 15 0 chr5 40290636 40290701 -112246558 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 892 350 349 47 70 chr5 40290788 40291130 -112246129 - L1M5 LINE L1 -567 5606 5273 3 892 7791 50 1 8 chr5 40291779 40292754 -112244505 - L1Md_F2 LINE L1 0 6582 5615 3 892 281 360 63 8 chr5 40292783 40292909 -112244350 - RSINE1 SINE B4 -29 136 4 3 892 458 309 98 39 chr5 40293343 40293599 -112243660 - MTEa LTR MaLR -34 345 75 3 892 21 0 0 0 chr5 40294602 40294623 -112242636 + AT_rich Low_complexity Low_complexity 1 21 0 3 892 412 248 0 113 chr5 40294958 40295117 -112242142 + B3 SINE B2 7 147 -69 4 892 345 342 106 29 chr5 40295646 40295986 -112241273 + RMER5 LTR ERV1 159 524 -10 4 892 993 112 0 0 chr5 40296267 40296401 -112240858 + B1_Mus1 SINE Alu 2 135 -13 4 892 333 0 0 0 chr5 40296401 40296438 -112240821 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 4 892 468 0 0 0 chr5 40297324 40297376 -112239883 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 892 183 80 0 0 chr5 40297376 40297401 -112239858 + (TATATG)n Simple_repeat Simple_repeat 3 27 0 4 892 324 0 0 0 chr5 40297452 40297488 -112239771 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 892 5043 58 36 0 chr5 40297506 40298150 -112239109 + L1_Mus1 LINE L1 5901 6567 0 4 892 237 139 0 0 chr5 40298294 40298337 -112238922 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 892 501 17 0 0 chr5 40298847 40298905 -112238354 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 892 614 202 6 0 chr5 40299351 40299529 -112237730 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 892 414 234 0 0 chr5 40299543 40299697 -112237562 + (CA)n Simple_repeat Simple_repeat 1 154 0 4 892 517 344 32 0 chr5 40303686 40303843 -112233416 + B3 SINE B2 2 163 -53 4 892 405 0 0 0 chr5 40303847 40303892 -112233367 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 892 204 40 0 0 chr5 40303899 40303924 -112233335 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 892 852 84 0 0 chr5 40304472 40304603 -112232656 + (CA)n Simple_repeat Simple_repeat 1 131 0 4 892 33 56 0 0 chr5 40304864 40304918 -112232341 + AT_rich Low_complexity Low_complexity 1 54 0 4 892 421 0 0 63 chr5 40305277 40305340 -112231919 + (TTTA)n Simple_repeat Simple_repeat 1 59 0 4 892 467 109 183 3 chr5 40305340 40305445 -112231814 - L1Md_F2 LINE L1 -40 6542 6417 4 892 264 116 93 0 chr5 40305418 40305461 -112231798 + L1Md_A LINE L1 6166 6212 -370 4 892 375 326 121 18 chr5 40305457 40306013 -112231246 + L1MC1 LINE L1 4594 5206 -940 4 892 617 312 37 3 chr5 40306109 40306408 -112230851 + L1MC1 LINE L1 5357 5665 -679 4 892 204 135 0 0 chr5 40306505 40306542 -112230717 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 4 892 492 332 105 16 chr5 40306569 40307213 -112230046 + L1MC1 LINE L1 5636 6331 -13 4 892 451 104 0 0 chr5 40307262 40307339 -112229920 - L1_Mus3 LINE L1 -3 6635 6559 4 892 513 0 0 0 chr5 40307362 40307419 -112229840 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 892 4188 77 0 18 chr5 40307544 40308110 -112229149 - L1Md_F2 LINE L1 -12 6570 6015 4 892 34482 79 3 4 chr5 40308279 40314687 -112222572 - L1Md_F2 LINE L1 -1 6584 85 4 892 406 342 102 17 chr5 40315835 40316070 -112221189 - HAL1-3A_ME LINE L1 -641 2217 1963 4 892 4675 253 68 24 chr5 40316585 40318522 -112218737 + Lx6 LINE L1 5075 7120 -340 4 892 22 88 0 0 chr5 40318615 40318672 -112218587 + AT_rich Low_complexity Low_complexity 1 57 0 4 892 1416 58 101 0 chr5 40319456 40319644 -112217615 - L1_Mus1 LINE L1 -4 6563 6357 4 892 749 93 0 0 chr5 40320126 40320233 -112217026 + B1_Mus2 SINE Alu 1 107 -40 4 892 371 247 82 72 chr5 40320666 40320836 -112216423 + MTE2a LTR MaLR 167 346 -73 4 892 946 282 9 70 chr5 40320911 40321227 -112216032 - MTD-int LTR MaLR -947 311 15 4 892 1082 274 114 27 chr5 40321242 40321610 -112215649 - MTD LTR MaLR -2 417 18 4 892 3279 35 0 0 chr5 40322053 40322447 -112214812 - L1Md_T LINE L1 0 6582 6189 4 892 368 358 23 6 chr5 40323774 40323951 -112213308 - L2 LINE L2 -518 2901 2722 4 892 2581 216 21 83 chr5 40324158 40324724 -112212535 - RMER19C LTR ERVK 0 611 72 4 892 1899 60 4 12 chr5 40324724 40324975 -112212284 + L1Md_F3 LINE L1 6334 6582 -2 4 892 2581 216 21 83 chr5 40324975 40325059 -112212200 - RMER19C LTR ERVK -540 71 1 4 892 543 65 21 21 chr5 40326288 40326382 -112210877 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 4 892 426 139 40 16 chr5 40326424 40326548 -112210711 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 4 892 512 56 14 0 chr5 40327322 40327394 -112209865 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 4 892 1615 280 169 35 chr5 40327907 40328612 -112208647 + RMER13A LTR ERVK 14 859 -49 4 892 434 296 59 0 chr5 40329384 40329519 -112207740 + B1_Mur4 SINE Alu 1 143 -7 4 892 258 328 196 28 chr5 40330212 40330391 -112206868 - MLT1C LTR MaLR -6 461 253 4 892 602 203 7 0 chr5 40332004 40332147 -112205112 + GA-rich Low_complexity Low_complexity 2 145 0 4 892 295 278 31 0 chr5 40332174 40332271 -112204988 + GA-rich Low_complexity Low_complexity 2 101 0 4 892 714 24 0 0 chr5 40332509 40332593 -112204666 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 4 892 1325 259 170 19 chr5 40333214 40333763 -112203496 - Lx6 LINE L1 -10 7450 6825 4 892 387 0 0 0 chr5 40335045 40335088 -112202171 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 892 258 274 21 97 chr5 40335436 40335529 -112201730 + 5S rRNA rRNA 5 90 -31 4 892 235 279 70 14 chr5 40335607 40335749 -112201510 + L1M5 LINE L1 3526 3675 -2471 4 892 24 32 0 0 chr5 40335829 40335860 -112201399 + AT_rich Low_complexity Low_complexity 1 31 0 4 892 336 379 6 22 chr5 40336022 40336203 -112201056 + Lx9 LINE L1 7254 7431 -213 4 892 720 119 0 0 chr5 40336228 40336346 -112200913 + (TATG)n Simple_repeat Simple_repeat 2 119 0 4 892 225 238 187 8 chr5 40336554 40336677 -112200582 + Lx8 LINE L1 7324 7468 -5 4 892 229 270 0 110 chr5 40336600 40336700 -112200559 + RMER1C Other Other 1250 1338 -4 4 892 232 344 49 0 chr5 40336700 40336822 -112200437 - L1M5 LINE L1 -2469 3677 3550 4 892 1017 40 0 0 chr5 40336876 40337002 -112200257 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 4 892 496 255 0 0 chr5 40338534 40338632 -112198627 + PB1D9 SINE Alu 21 118 -2 4 892 270 116 0 0 chr5 40338796 40338839 -112198420 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 892 21 0 0 0 chr5 40338839 40338860 -112198399 + AT_rich Low_complexity Low_complexity 1 21 0 4 892 26 0 0 0 chr5 40339184 40339210 -112198049 + AT_rich Low_complexity Low_complexity 1 26 0 4 892 272 157 0 28 chr5 40339467 40339539 -112197720 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 4 892 534 297 78 44 chr5 40339540 40339744 -112197515 - B3 SINE B2 0 216 6 4 892 1006 189 43 9 chr5 40339968 40340198 -112197061 + L1_Mur3 LINE L1 818 1055 -6673 4 892 12688 189 54 30 chr5 40340213 40340322 -112196937 + L1_Mur3 LINE L1 1950 2057 -3823 4 892 273 75 0 0 chr5 40340322 40340362 -112196897 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 892 12688 189 54 30 chr5 40340362 40343360 -112193899 + L1_Mur3 LINE L1 2058 5134 -746 4 892 231 191 21 0 chr5 40343364 40343411 -112193848 + tRNA-Cys-TGY tRNA tRNA 14 61 -14 4 892 1058 96 12 35 chr5 40343370 40343542 -112193717 + B2_Mm2 SINE B2 28 195 0 4 892 644 224 98 22 chr5 40343544 40343727 -112193532 + L1_Mur3 LINE L1 5123 5319 -561 4 892 1506 269 116 14 chr5 40343728 40344028 -112193231 + Lx6 LINE L1 6894 7235 -225 4 892 269 68 0 22 chr5 40344028 40344073 -112193186 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 4 892 1506 269 116 14 chr5 40344073 40344187 -112193072 + Lx6 LINE L1 7236 7349 -111 4 892 32 75 0 0 chr5 40344237 40344304 -112192955 + AT_rich Low_complexity Low_complexity 1 67 0 4 892 21 0 0 0 chr5 40344679 40344700 -112192559 + AT_rich Low_complexity Low_complexity 1 21 0 4 892 243 0 0 0 chr5 40345172 40345199 -112192060 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 892 213 39 0 0 chr5 40345199 40345224 -112192035 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 892 1083 136 0 0 chr5 40346113 40346333 -112190926 + (TG)n Simple_repeat Simple_repeat 1 220 0 4 892 274 259 0 0 chr5 40346400 40346454 -112190805 - tRNA-Ala-GCY_ tRNA tRNA -9 66 13 4 892 299 265 93 68 chr5 40346658 40346820 -112190439 - RLTR23 LTR ERV1 0 430 265 4 892 10181 90 17 7 chr5 40347035 40348749 -112188510 - Lx3_Mus LINE L1 0 7009 5288 4 892 522 83 0 0 chr5 40348749 40348821 -112188438 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 892 5110 96 38 4 chr5 40348821 40348953 -112188306 - Lx3_Mus LINE L1 -599 5287 5134 4 892 336 111 0 0 chr5 40349077 40349131 -112188128 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 892 609 14 0 0 chr5 40349516 40349586 -112187673 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 892 450 0 0 0 chr5 40349586 40349635 -112187624 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 892 234 0 0 0 chr5 40349798 40349824 -112187435 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 892 315 0 0 0 chr5 40349825 40349860 -112187399 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 892 578 333 86 50 chr5 40349938 40350159 -112187100 + ORR1D2 LTR MaLR 1 229 -141 4 892 259 390 73 35 chr5 40350725 40351094 -112186165 + L3 LINE CR1 3233 3615 -874 4 892 605 80 11 0 chr5 40351165 40351253 -112186006 + (GGA)n Simple_repeat Simple_repeat 3 91 0 4 892 962 337 40 38 chr5 40351387 40351809 -112185450 + MER54B LTR ERVL 371 793 0 4 892 1108 157 75 14 chr5 40352489 40352702 -112184557 + URR1A DNA MER1_type 1 226 0 4 892 309 289 61 103 chr5 40353720 40353982 -112183277 + L1ME4a LINE L1 5720 5970 -154 4 892 360 0 0 0 chr5 40354367 40354407 -112182852 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 892 399 298 16 37 chr5 40354491 40354679 -112182580 + Lx9 LINE L1 7304 7487 -157 4 892 243 296 11 22 chr5 40355675 40355765 -112181494 - MLT1A1 LTR MaLR -10 398 310 4 892 1486 311 64 22 chr5 40356081 40356721 -112180538 + Lx9 LINE L1 6379 7045 -599 4 892 210 118 0 0 chr5 40356810 40356844 -112180415 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 892 690 209 74 35 chr5 40356872 40357130 -112180129 + Lx9 LINE L1 7368 7635 -9 4 892 280 260 18 63 chr5 40357511 40357622 -112179637 + L1ME2 LINE L1 5941 6046 -118 4 892 241 326 20 10 chr5 40357715 40357814 -112179445 - MLT1B LTR MaLR 0 390 291 4 892 1578 19 0 0 chr5 40358994 40359203 -112178056 + (GAA)n Simple_repeat Simple_repeat 1 209 0 4 892 246 22 87 0 chr5 40359280 40359326 -112177933 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 4 892 1202 55 0 0 chr5 40359326 40359472 -112177787 - B1_Mus2 SINE Alu 0 147 2 4 892 21 0 0 0 chr5 40359620 40359641 -112177618 + AT_rich Low_complexity Low_complexity 1 21 0 4 892 25 51 0 0 chr5 40360849 40360888 -112176371 + AT_rich Low_complexity Low_complexity 1 39 0 4 892 483 309 25 14 chr5 40360981 40361263 -112175996 - L1M2 LINE L1 -2941 3202 2918 4 892 367 288 127 16 chr5 40361269 40361454 -112175805 - B3 SINE B2 0 216 11 4 892 1569 291 27 11 chr5 40361456 40361901 -112175358 + Lx8 LINE L1 6456 6907 -566 5 892 660 313 48 139 chr5 40361908 40362081 -112175178 - MTD LTR MaLR -41 378 206 5 892 5251 85 33 8 chr5 40362081 40362840 -112174419 - L1_Mus3 LINE L1 -1 6637 5860 5 892 660 313 48 139 chr5 40362840 40363082 -112174177 - MTD LTR MaLR -214 205 1 5 892 608 309 27 13 chr5 40363356 40363654 -112173605 - Lx7 LINE L1 -1783 5913 5612 5 892 1766 269 77 37 chr5 40363664 40364288 -112172971 + Lx8 LINE L1 6739 7387 -86 5 892 25 75 0 0 chr5 40364307 40364360 -112172899 + AT_rich Low_complexity Low_complexity 1 53 0 5 892 315 0 0 0 chr5 40364530 40364565 -112172694 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 892 620 212 31 14 chr5 40364927 40365089 -112172170 + RMER20B LTR ERVK 1 161 -355 5 892 387 0 0 0 chr5 40365275 40365318 -112171941 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 892 4453 53 6 0 chr5 40365748 40366297 -112170962 - L1Md_F2 LINE L1 -1 6581 6030 5 892 406 342 66 46 chr5 40366553 40366689 -112170570 - MLT1A0 LTR MaLR -17 348 204 5 892 414 0 0 0 chr5 40366689 40366735 -112170524 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 892 406 342 66 46 chr5 40366735 40366901 -112170358 - MLT1A0 LTR MaLR -162 203 41 5 892 23 0 0 0 chr5 40369644 40369667 -112167592 + AT_rich Low_complexity Low_complexity 1 23 0 5 893 703 231 43 0 chr5 40370778 40370986 -112166273 + Lx9 LINE L1 7423 7639 -5 5 893 246 378 53 26 chr5 40371014 40371128 -112166131 + PB1D10 SINE Alu 1 117 0 5 893 29 98 0 0 chr5 40372416 40372508 -112164751 + AT_rich Low_complexity Low_complexity 1 92 0 5 893 5046 45 0 5 chr5 40374340 40374959 -112162300 + L1Md_F3 LINE L1 5955 6570 -14 5 893 1659 242 54 22 chr5 40375199 40375605 -112161654 - MTD LTR MaLR 0 419 1 5 893 835 94 0 55 chr5 40376227 40376373 -112160886 - L1_Mus1 LINE L1 0 6567 6430 5 893 2990 59 31 0 chr5 40376661 40377049 -112160210 - MTB LTR MaLR 0 400 1 5 893 1236 210 8 4 chr5 40377097 40377346 -112159913 - Lx4A LINE L1 -1 7057 6808 5 893 5196 154 19 56 chr5 40377355 40378479 -112158780 - Lx4A LINE L1 -517 6541 5447 5 893 270 207 0 0 chr5 40379963 40380021 -112157238 + CT-rich Low_complexity Low_complexity 4 61 0 5 893 767 285 172 7 chr5 40380023 40380777 -112156482 - L1M2 LINE L1 -613 5678 4781 5 893 28 29 0 0 chr5 40381430 40381465 -112155794 + AT_rich Low_complexity Low_complexity 1 35 0 5 893 288 169 26 13 chr5 40381478 40381556 -112155703 + (TATG)n Simple_repeat Simple_repeat 2 80 0 5 893 242 277 61 15 chr5 40381585 40381651 -112155608 - B1F SINE Alu -80 69 1 5 893 400 271 45 110 chr5 40381931 40382159 -112155100 + MTEa LTR MaLR 118 355 -24 5 893 845 288 83 32 chr5 40382193 40382770 -112154489 - L1M2 LINE L1 -660 5640 5006 5 893 1146 76 0 0 chr5 40382770 40382914 -112154345 - B1_Mus1 SINE Alu -3 145 2 5 893 845 290 72 56 chr5 40382914 40383034 -112154225 - L1M2 LINE L1 -1138 5005 4892 5 893 2811 9 3 0 chr5 40383034 40383355 -112153904 - RLTRETN_Mm LTR ERVK 0 322 1 5 893 845 290 72 56 chr5 40383355 40383606 -112153653 - L1M2 LINE L1 -1252 4891 4650 5 893 31 44 0 0 chr5 40384091 40384136 -112153123 + AT_rich Low_complexity Low_complexity 1 45 0 5 893 1433 277 103 10 chr5 40384183 40384599 -112152660 - Lx8 LINE L1 -830 6643 6189 5 893 2009 286 82 18 chr5 40384641 40385382 -112151877 + Lx8 LINE L1 6683 7471 -2 5 893 28 29 0 0 chr5 40385807 40385842 -112151417 + AT_rich Low_complexity Low_complexity 1 35 0 5 893 225 323 20 50 chr5 40385889 40385990 -112151269 + MLT1E1A LTR MaLR 572 669 -11 5 893 225 207 0 17 chr5 40386662 40386721 -112150538 + (CAAA)n Simple_repeat Simple_repeat 3 60 0 5 893 227 171 25 67 chr5 40388795 40388914 -112148345 + (TTATA)n Simple_repeat Simple_repeat 1 114 0 5 893 1664 261 96 35 chr5 40389000 40389488 -112147771 - Lx8 LINE L1 0 7473 6961 5 893 718 250 137 36 chr5 40389488 40389824 -112147435 + ORR1D2 LTR MaLR 1 370 0 5 893 1664 261 96 35 chr5 40389824 40389958 -112147301 - Lx8 LINE L1 -513 6960 6814 5 893 378 0 0 0 chr5 40390615 40390657 -112146602 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 893 22 0 0 0 chr5 40391112 40391134 -112146125 + AT_rich Low_complexity Low_complexity 1 22 0 5 893 180 250 88 59 chr5 40391294 40391396 -112145863 + MIRm SINE MIR 45 149 -127 5 893 362 340 55 66 chr5 40391925 40392290 -112144969 - L2a LINE L2 -8 3418 3058 5 893 326 33 49 16 chr5 40393359 40393420 -112143839 + (CAAAAA)n Simple_repeat Simple_repeat 3 65 0 5 893 1146 54 36 0 chr5 40393611 40393887 -112143372 + (TG)n Simple_repeat Simple_repeat 1 285 0 5 893 8764 152 39 11 chr5 40394412 40396987 -112140272 - Lx2 LINE L1 0 6997 4340 5 893 23 0 0 0 chr5 40398083 40398106 -112139153 + AT_rich Low_complexity Low_complexity 1 23 0 5 893 332 328 91 0 chr5 40398435 40398621 -112138638 - MER44B DNA MER2_type 0 550 348 5 893 254 309 14 68 chr5 40399005 40399151 -112138108 - MIRc SINE MIR -113 155 18 5 893 698 113 0 9 chr5 40399159 40399275 -112137984 + (TA)n Simple_repeat Simple_repeat 1 115 0 5 893 207 0 0 0 chr5 40399275 40399297 -112137962 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 893 328 242 126 115 chr5 40401267 40401449 -112135810 + B3A SINE B2 3 186 -9 5 893 1194 309 69 20 chr5 40401925 40402430 -112134829 + RMER5 LTR ERV1 1 530 -4 5 893 1191 61 0 0 chr5 40403955 40404102 -112133157 - B1_Mm SINE Alu 0 147 1 5 893 452 263 114 0 chr5 40404530 40404644 -112132615 + RSINE1 SINE B4 3 129 -36 5 893 23 86 0 0 chr5 40404678 40404736 -112132523 + AT_rich Low_complexity Low_complexity 1 58 0 5 893 249 389 22 11 chr5 40404932 40405114 -112132145 - MIRb SINE MIR -45 223 40 5 893 211 286 289 13 chr5 40405609 40405758 -112131501 + MIR SINE MIR 21 210 -52 5 893 475 343 45 66 chr5 40406684 40407080 -112130179 - MLT1B LTR MaLR 0 390 3 5 893 2295 109 98 0 chr5 40407196 40407563 -112129696 - RLTR44A LTR ERVK -2 403 1 5 893 28 48 0 0 chr5 40407754 40407796 -112129463 + AT_rich Low_complexity Low_complexity 1 42 0 5 893 372 103 0 0 chr5 40408049 40408107 -112129152 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 893 230 281 18 0 chr5 40408135 40408192 -112129067 + GA-rich Low_complexity Low_complexity 2 59 0 5 893 431 314 50 0 chr5 40409035 40409194 -112128065 - Lx9 LINE L1 -804 6840 6674 5 893 577 323 113 52 chr5 40409211 40409901 -112127358 + Lx9 LINE L1 6889 7471 -2 5 893 231 103 0 0 chr5 40410157 40410196 -112127063 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 893 1166 241 77 69 chr5 40410204 40410378 -112126881 + ORR1C2 LTR MaLR 1 181 -203 5 893 456 72 0 0 chr5 40410378 40410447 -112126812 + (TCTCTG)n Simple_repeat Simple_repeat 2 70 0 5 893 1166 241 77 69 chr5 40410447 40410651 -112126608 + ORR1C2 LTR MaLR 182 381 -3 5 893 503 268 23 8 chr5 40411269 40411397 -112125862 - B1_Mm SINE Alu 0 147 18 5 893 1108 56 21 0 chr5 40411429 40411573 -112125686 - B1_Mus2 SINE Alu 0 147 1 5 893 260 350 111 12 chr5 40411609 40411771 -112125488 - Arthur1B DNA Tip100 -859 366 189 5 893 293 342 88 0 chr5 40411918 40412032 -112125227 - RSINE1 SINE B4 -31 134 11 5 893 24 53 0 0 chr5 40412871 40412909 -112124350 + AT_rich Low_complexity Low_complexity 1 38 0 5 893 226 351 0 0 chr5 40413013 40413090 -112124169 - MER33 DNA MER1_type -238 86 10 5 893 308 178 0 14 chr5 40413740 40413814 -112123445 + CT-rich Low_complexity Low_complexity 2 74 0 5 893 620 231 13 53 chr5 40414596 40414747 -112122512 + B3 SINE B2 64 208 -8 5 893 32733 87 8 10 chr5 40414954 40419539 -112117720 - L1Md_F2 LINE L1 -12 6570 1980 5 893 304 22 44 0 chr5 40419539 40419584 -112117675 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 893 32733 80 5 5 chr5 40419584 40420994 -112116265 - L1Md_F2 LINE L1 -3904 1979 587 5 893 211 219 11 68 chr5 40422325 40422413 -112114846 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 5 893 293 349 62 66 chr5 40422743 40423016 -112114243 + MARNA DNA Mariner 297 568 -18 5 893 326 292 28 0 chr5 40423075 40423147 -112114112 - ID4 SINE ID -1 82 9 5 893 978 102 7 0 chr5 40426273 40426410 -112110849 + B1_Mus1 SINE Alu 1 138 -10 5 893 258 32 0 0 chr5 40426410 40426441 -112110818 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 893 360 0 0 0 chr5 40426516 40426556 -112110703 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 893 32351 84 7 13 chr5 40427006 40432211 -112105048 + L1Md_F3 LINE L1 411 5585 -298 5 893 7964 47 3 7 chr5 40432212 40433214 -112104045 + L1Md_F3 LINE L1 5587 6584 0 5 893 2612 188 79 11 chr5 40433921 40434324 -112102935 - Lx LINE L1 0 6654 6213 5 893 3435 35 0 0 chr5 40434324 40434720 -112102539 - MTA_Mm LTR MaLR 0 396 1 5 893 2612 188 79 11 chr5 40434720 40434850 -112102409 - Lx LINE L1 -442 6212 6085 5 893 309 311 32 19 chr5 40435695 40435849 -112101410 - B3 SINE B2 -2 214 59 5 893 225 245 19 0 chr5 40436155 40436208 -112101051 + MIRm SINE MIR 222 275 -1 5 893 240 221 235 49 chr5 40437309 40437556 -112099703 + L1MC LINE L1 3110 3402 -2744 5 893 27 29 0 0 chr5 40437556 40437590 -112099669 + AT_rich Low_complexity Low_complexity 1 34 0 5 893 577 274 61 69 chr5 40437853 40438230 -112099029 + L1MC LINE L1 3865 4238 -1908 5 893 546 241 152 38 chr5 40438265 40438502 -112098757 + Lx8 LINE L1 7207 7470 -3 5 893 248 296 52 9 chr5 40438533 40438649 -112098610 + L1MC LINE L1 4251 4371 -1775 5 893 376 255 198 57 chr5 40438690 40438973 -112098286 + L1MC3 LINE L1 6940 7262 -523 5 893 493 271 126 12 chr5 40439001 40439255 -112098004 + L1MC3 LINE L1 7473 7755 -30 5 893 21 0 0 0 chr5 40440261 40440282 -112096977 + AT_rich Low_complexity Low_complexity 1 21 0 5 893 195 42 0 0 chr5 40440379 40440403 -112096856 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 893 437 216 29 10 chr5 40440404 40440507 -112096752 - Lx9 LINE L1 -169 7475 7371 5 893 232 283 0 0 chr5 40440829 40440889 -112096370 + A-rich Low_complexity Low_complexity 1 60 0 5 893 546 91 0 0 chr5 40441324 40441401 -112095858 + L1_Mur2 LINE L1 4368 4444 -1433 5 893 2778 319 68 56 chr5 40441406 40443521 -112093738 + RLTR4_MM-int LTR ERV1 1297 3437 -4164 5 893 28250 117 24 14 chr5 40443541 40449847 -112087412 + L1_Mus1 LINE L1 177 6554 -13 5 893 441 0 0 0 chr5 40449847 40449896 -112087363 + (TAA)n Simple_repeat Simple_repeat 3 51 0 5 893 903 329 81 60 chr5 40449901 40451448 -112085811 + MuRRS4-int LTR ERV1 1901 3811 -1252 6 893 2423 103 26 23 chr5 40451512 40451899 -112085360 + L1_Mus3 LINE L1 6244 6631 -7 6 893 279 296 22 4 chr5 40453973 40454098 -112083161 + L1_Mur3 LINE L1 5677 5837 -2158 6 893 278 284 0 7 chr5 40454402 40454551 -112082708 + (CATATA)n Simple_repeat Simple_repeat 6 153 0 6 893 752 354 63 45 chr5 40455511 40456002 -112081257 - MLT1F2 LTR MaLR 0 560 61 6 893 215 254 14 43 chr5 40456432 40456502 -112080757 + (CATA)n Simple_repeat Simple_repeat 3 70 0 6 893 540 68 0 0 chr5 40456524 40456597 -112080662 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 893 7222 60 8 2 chr5 40456891 40457808 -112079451 + L1Md_F2 LINE L1 5660 6581 -1 6 893 684 337 45 26 chr5 40457901 40458166 -112079093 - B4A SINE B4 -22 270 1 6 893 22 0 0 0 chr5 40458543 40458565 -112078694 + AT_rich Low_complexity Low_complexity 1 22 0 6 893 1306 290 63 35 chr5 40459155 40459663 -112077596 + Lx9 LINE L1 6320 6841 -803 6 893 266 218 0 25 chr5 40459664 40459744 -112077515 + CT-rich Low_complexity Low_complexity 2 79 0 6 893 666 31 20 10 chr5 40459745 40459843 -112077416 + (TA)n Simple_repeat Simple_repeat 1 99 0 6 893 751 276 44 20 chr5 40459877 40460080 -112077179 - B3 SINE B2 -3 213 6 6 893 21 36 0 0 chr5 40460091 40460119 -112077140 + AT_rich Low_complexity Low_complexity 1 28 0 6 893 252 44 0 0 chr5 40460582 40460627 -112076632 - L1Md_F2 LINE L1 -2 6580 6536 6 893 39248 12 0 2 chr5 40460627 40468019 -112069240 - L1Md_A LINE L1 0 6582 1 6 893 28956 75 56 10 chr5 40468017 40473951 -112063308 - L1Md_F2 LINE L1 -31 6551 412 6 893 267 54 0 0 chr5 40474326 40474363 -112062896 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 6 893 431 264 43 27 chr5 40474363 40474550 -112062709 + L1MA6 LINE L1 6073 6262 -38 6 893 21 0 0 0 chr5 40474584 40474605 -112062654 + AT_rich Low_complexity Low_complexity 1 21 0 6 893 8478 105 23 49 chr5 40474752 40477204 -112060055 + Lx3_Mus LINE L1 4630 7009 0 6 893 183 139 0 0 chr5 40477213 40477249 -112060010 + (A)n Simple_repeat Simple_repeat 1 36 0 6 893 329 227 10 10 chr5 40478074 40478172 -112059087 + Lx3C LINE L1 866 963 -6021 6 893 990 105 0 0 chr5 40478151 40478303 -112058956 + L1_Mm LINE L1 4438 4589 -1294 6 893 6412 166 12 3 chr5 40478304 40479456 -112057803 + Lx2 LINE L1 5836 6997 0 6 893 1411 170 3 29 chr5 40479487 40479555 -112057704 + Lx3C LINE L1 1044 1111 -5873 6 893 2920 23 35 0 chr5 40479555 40479903 -112057356 + L1Md_F3 LINE L1 6211 6570 -14 6 893 20344 168 41 44 chr5 40479903 40480784 -112056475 + Lx3C LINE L1 1112 1960 -3926 6 893 4448 52 14 2 chr5 40480784 40481337 -112055922 + LTRIS2 LTR ERV1 5 564 0 6 893 20344 172 46 39 chr5 40481337 40486283 -112050976 + Lx3C LINE L1 1961 6972 -4 6 893 30 27 0 0 chr5 40486497 40486534 -112050725 + AT_rich Low_complexity Low_complexity 1 37 0 6 893 225 0 0 0 chr5 40486564 40486589 -112050670 + (TTAA)n Simple_repeat Simple_repeat 1 25 0 6 893 5510 211 51 37 chr5 40486589 40487961 -112049298 - Lx5 LINE L1 -16 7034 5644 6 893 985 191 50 17 chr5 40487960 40488200 -112049059 + Lx5 LINE L1 5381 5628 -249 6 893 28 48 0 0 chr5 40488434 40488476 -112048783 + AT_rich Low_complexity Low_complexity 1 42 0 6 893 2402 40 0 0 chr5 40489989 40490285 -112046974 - L1Md_F3 LINE L1 -136 5747 5452 6 893 7012 28 0 6 chr5 40490285 40491117 -112046142 + L1Md_F3 LINE L1 5756 6582 -2 6 893 405 0 0 0 chr5 40492263 40492308 -112044951 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 893 281 354 65 17 chr5 40492458 40492748 -112044511 + L1MC LINE L1 5509 5812 -1973 6 893 2881 128 35 21 chr5 40494528 40494636 -112042623 - RMER17A LTR ERVK -228 523 415 6 893 741 23 0 0 chr5 40494636 40494723 -112042536 + (GA)n Simple_repeat Simple_repeat 2 88 0 6 893 2881 128 35 21 chr5 40494723 40495127 -112042132 - RMER17A LTR ERVK -337 414 4 6 893 388 174 22 0 chr5 40495159 40495251 -112042008 + (TA)n Simple_repeat Simple_repeat 2 95 0 6 893 321 82 0 0 chr5 40496080 40496129 -112041130 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 6 893 563 331 6 13 chr5 40496129 40496285 -112040974 - RSINE1 SINE B4 -3 162 8 6 893 405 0 0 0 chr5 40497999 40498044 -112039215 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 893 420 338 19 70 chr5 40498256 40498469 -112038790 + Lx8 LINE L1 7131 7332 -141 6 893 1447 315 48 23 chr5 40498980 40499633 -112037626 - Lx8 LINE L1 -311 7162 6494 6 893 1137 287 25 79 chr5 40499643 40499999 -112037260 - MTD LTR MaLR -14 405 69 6 893 345 179 0 69 chr5 40500000 40500072 -112037187 - MTC LTR MaLR -354 67 1 1 893 523 297 130 7 chr5 40500072 40500357 -112036902 - Lx8 LINE L1 -978 6495 6176 2 893 901 71 0 0 chr5 40500914 40501026 -112036233 + L1_Mm LINE L1 5425 5536 -347 3 893 550 264 5 78 chr5 40501026 40501076 -112036183 + MT2A LTR ERVL 307 351 -182 4 111 7526 75 0 5 chr5 40501076 40502065 -112035194 + L1Md_F2 LINE L1 5587 6570 -12 5 894 550 264 5 78 chr5 40502065 40502207 -112035052 + MT2A LTR ERVL 352 485 -48 4 894 240 35 0 0 chr5 40502210 40502239 -112035020 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 6 894 225 0 0 0 chr5 40502449 40502474 -112034785 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 894 477 0 0 0 chr5 40502474 40502526 -112034733 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 894 298 311 115 65 chr5 40503508 40503739 -112033520 + MLT1A LTR MaLR 34 271 -103 9 894 995 96 18 6 chr5 40503739 40503907 -112033352 - L1_Mus3 LINE L1 -2 6636 6467 1 894 298 311 115 65 chr5 40503907 40503998 -112033261 + MLT1A LTR MaLR 272 372 -2 9 894 534 191 27 25 chr5 40504192 40504332 -112032927 + MTEa LTR MaLR 212 379 0 1 894 238 293 0 0 chr5 40504367 40504425 -112032834 - MLT1F2 LTR MaLR -67 493 436 1 894 268 258 75 0 chr5 40504699 40504792 -112032467 - L1MA9 LINE L1 -51 6261 6162 1 894 273 307 98 22 chr5 40504895 40505078 -112032181 - L1MA9 LINE L1 -293 6019 5823 1 894 555 300 48 10 chr5 40505649 40505858 -112031401 + ID_B1 SINE B4 5 221 -3 1 894 180 0 0 0 chr5 40506025 40506045 -112031214 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 894 862 278 5 20 chr5 40506603 40506798 -112030461 + B3 SINE B2 1 192 -24 1 894 4552 67 3 36 chr5 40507386 40508021 -112029238 + L1_Mus2 LINE L1 5952 6565 -1 1 894 1040 212 40 106 chr5 40509366 40509706 -112027553 + ORR1A4 LTR MaLR 1 370 -4 1 894 1796 258 90 16 chr5 40509762 40510399 -112026860 - Lx9 LINE L1 0 7644 6959 1 894 339 25 0 0 chr5 40510399 40510439 -112026820 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2 894 420 309 79 76 chr5 40510472 40510749 -112026510 - B4A SINE B4 0 292 15 2 894 1074 38 0 0 chr5 40512098 40512229 -112025030 + (CA)n Simple_repeat Simple_repeat 2 132 0 2 894 303 113 0 0 chr5 40512793 40512855 -112024404 - L1_Mus3 LINE L1 0 6638 6577 2 894 1125 276 75 21 chr5 40513787 40514120 -112023139 + MTD LTR MaLR 69 419 0 2 894 248 328 0 0 chr5 40514121 40514182 -112023077 - RSINE1 SINE B4 -26 139 79 2 894 210 301 113 22 chr5 40514403 40514518 -112022741 - MIRc SINE MIR -95 173 47 2 894 21 82 0 0 chr5 40515122 40515171 -112022088 + AT_rich Low_complexity Low_complexity 1 49 0 2 894 453 330 66 33 chr5 40515286 40515499 -112021760 - RMER15 LTR ERVL -15 560 341 2 894 183 42 0 0 chr5 40516331 40516355 -112020904 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 894 2555 238 53 4 chr5 40516856 40517401 -112019858 + Lx5 LINE L1 6244 6815 -235 3 894 250 214 18 18 chr5 40517488 40517545 -112019714 + Lx5 LINE L1 6813 6869 -181 3 894 2159 46 11 11 chr5 40517724 40518008 -112019251 + L1Md_F3 LINE L1 6301 6584 0 3 894 567 192 40 0 chr5 40518011 40518136 -112019123 + Lx5 LINE L1 6918 7047 -3 3 894 679 231 65 79 chr5 40518892 40519169 -112018090 + MT2B LTR ERVL 329 601 0 3 894 275 0 0 28 chr5 40520485 40520521 -112016738 + (TAA)n Simple_repeat Simple_repeat 3 37 0 3 894 243 0 0 0 chr5 40520521 40520548 -112016711 + (TTA)n Simple_repeat Simple_repeat 3 29 0 3 894 204 97 0 0 chr5 40520616 40520647 -112016612 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 894 7489 63 4 9 chr5 40520790 40521763 -112015496 + L1Md_F2 LINE L1 5613 6580 -2 3 894 287 186 56 63 chr5 40521800 40521917 -112015342 - Lx9 LINE L1 -16 7628 7511 3 894 378 0 0 0 chr5 40521917 40521959 -112015300 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 894 7964 48 6 1 chr5 40523825 40524932 -112012327 - L1Md_F3 LINE L1 -14 6570 5458 3 894 1120 307 131 52 chr5 40524976 40526237 -112011022 - BLACKJACK DNA AcHobo -298 2646 1286 4 894 296 373 83 36 chr5 40526482 40526760 -112010499 + B4 SINE B4 2 292 0 4 894 1042 172 111 0 chr5 40527190 40527388 -112009871 - URR1A DNA MER1_type -6 220 1 4 894 326 345 8 8 chr5 40527449 40527566 -112009693 - BLACKJACK DNA AcHobo -2693 251 135 4 894 1376 268 116 59 chr5 40527748 40527930 -112009329 - L1MC1 LINE L1 -137 6196 6014 4 894 334 290 112 22 chr5 40527930 40528064 -112009195 + B1_Mur2 SINE Alu 4 149 0 4 894 1376 268 116 59 chr5 40528064 40528539 -112008720 - L1MC1 LINE L1 -320 6013 5502 4 894 31521 88 4 0 chr5 40529364 40530944 -112006315 + L1Md_F2 LINE L1 374 1966 -3917 4 894 306 0 0 0 chr5 40530944 40530978 -112006281 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 894 31521 82 7 0 chr5 40530978 40534576 -112002683 + L1Md_F2 LINE L1 1967 5581 -302 4 894 7775 49 19 1 chr5 40534580 40535556 -112001703 + L1Md_F2 LINE L1 5587 6580 -2 4 894 426 53 0 0 chr5 40535559 40535616 -112001643 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 4 894 305 286 9 9 chr5 40535708 40535814 -112001445 - MLT1C LTR MaLR -6 461 356 4 894 286 353 44 7 chr5 40535994 40536131 -112001128 - MLT1C LTR MaLR -325 142 1 4 894 474 305 74 46 chr5 40536297 40536620 -112000639 - MLT1B LTR MaLR -28 362 31 4 894 248 322 67 75 chr5 40536701 40536956 -112000303 + Lx9 LINE L1 7197 7449 -195 5 894 291 28 0 0 chr5 40536965 40537001 -112000258 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 894 540 89 0 0 chr5 40537689 40537768 -111999491 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 5 894 1026 151 4 4 chr5 40539393 40539620 -111997639 + GA-rich Low_complexity Low_complexity 1 227 0 5 894 218 302 16 0 chr5 40539650 40539713 -111997546 + B4 SINE B4 2 65 -227 5 894 4715 98 17 3 chr5 40540111 40540800 -111996459 - Lx3_Mus LINE L1 -216 5670 4972 5 894 2140 129 37 18 chr5 40540795 40541030 -111996229 + Lx3_Mus LINE L1 5664 5906 -1103 5 894 324 0 0 0 chr5 40541030 40541066 -111996193 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 5 894 2140 129 37 18 chr5 40541066 40541210 -111996049 + Lx3_Mus LINE L1 5907 6050 -959 5 894 450 196 24 86 chr5 40541570 40541750 -111995509 - Lx3B LINE L1 -1 7008 6821 5 894 15750 25 0 28 chr5 40541749 40544416 -111992843 - L1Md_T LINE L1 0 6582 3990 5 894 2457 140 5 2 chr5 40544415 40544808 -111992451 - Lx3B LINE L1 -147 6826 6433 5 894 423 0 0 0 chr5 40545018 40545065 -111992194 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 894 1006 331 99 46 chr5 40546451 40547410 -111989849 + L1M4b LINE L1 572 1581 -5753 6 894 6940 76 9 4 chr5 40547487 40548414 -111988845 - L1_Mus2 LINE L1 -1 6565 5635 6 894 2225 163 39 34 chr5 40548415 40548854 -111988405 - Lx4B LINE L1 -4 7054 6614 6 894 2553 157 13 19 chr5 40548854 40549315 -111987944 - Lx4B LINE L1 -830 6228 5771 6 894 532 328 64 19 chr5 40549483 40549747 -111987512 - L1_Mur3 LINE L1 -530 5350 5075 6 894 2228 301 48 20 chr5 40549764 40551141 -111986118 - RMER1A Other Other -283 747 1 6 894 950 313 79 43 chr5 40551611 40552159 -111985100 - L1_Mur3 LINE L1 -920 4960 4360 6 894 297 0 0 0 chr5 40552159 40552192 -111985067 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 894 798 313 79 43 chr5 40552192 40552254 -111985005 - L1_Mur3 LINE L1 -1488 4359 4302 6 894 294 330 77 0 chr5 40552264 40552355 -111984904 + B3A SINE B2 5 102 -96 6 894 24 53 0 0 chr5 40552372 40552410 -111984849 + AT_rich Low_complexity Low_complexity 1 38 0 6 894 433 370 15 5 chr5 40552601 40552825 -111984434 + Lx9 LINE L1 7050 7405 -239 6 894 299 266 32 12 chr5 40552893 40553038 -111984221 + L1MB8 LINE L1 6032 6176 -8 6 894 6752 161 26 9 chr5 40553247 40555245 -111982014 - Lx LINE L1 -6 6648 4612 7 894 820 283 4 13 chr5 40555823 40556049 -111981210 + Lx9 LINE L1 6632 6855 -789 7 894 21 0 0 0 chr5 40556100 40556121 -111981138 + AT_rich Low_complexity Low_complexity 1 21 0 7 894 2602 122 184 0 chr5 40557126 40557583 -111979676 - L1VL2 LINE L1 -5705 630 90 7 894 203 169 25 49 chr5 40557811 40557892 -111979367 + (TTATA)n Simple_repeat Simple_repeat 4 82 0 7 894 859 288 63 126 chr5 40557904 40558301 -111978958 - MTE2a LTR MaLR -1 378 7 7 894 1295 56 6 0 chr5 40558301 40558480 -111978779 + L1Md_F2 LINE L1 6403 6582 0 7 894 307 341 47 60 chr5 40558653 40558887 -111978372 - MLT2B2 LTR ERVL -282 233 3 7 894 183 100 0 0 chr5 40559594 40559624 -111977635 + (TCTCCC)n Simple_repeat Simple_repeat 1 30 0 7 894 918 124 0 0 chr5 40559629 40559782 -111977477 + (TTC)n Simple_repeat Simple_repeat 1 153 0 7 894 745 283 140 11 chr5 40560080 40560165 -111977094 + Lx8 LINE L1 7043 7139 -334 8 894 2142 41 0 11 chr5 40560165 40560434 -111976825 + L1Md_F2 LINE L1 6316 6581 -1 8 894 745 283 140 11 chr5 40560434 40560634 -111976625 + Lx8 LINE L1 7140 7364 -109 8 894 8088 32 0 6 chr5 40560740 40561701 -111975558 + L1Md_T LINE L1 5626 6580 -2 8 894 269 292 78 26 chr5 40562854 40562970 -111974289 - MIRb SINE MIR -79 189 68 8 894 200 324 128 35 chr5 40563022 40563163 -111974096 + MIR SINE MIR 2 155 -107 8 894 2557 145 9 7 chr5 40563551 40563988 -111973271 + Lx2 LINE L1 6559 6996 -1 8 894 513 0 0 0 chr5 40564157 40564214 -111973045 + (GA)n Simple_repeat Simple_repeat 2 58 0 8 894 45 0 0 0 chr5 40565420 40565465 -111971794 + AT_rich Low_complexity Low_complexity 1 45 0 8 894 393 362 6 24 chr5 40565651 40565815 -111971444 - MT2A LTR ERVL -72 461 301 8 894 471 128 0 0 chr5 40565945 40566031 -111971228 + (CA)n Simple_repeat Simple_repeat 1 86 0 8 894 357 82 0 0 chr5 40566031 40566079 -111971180 + (TA)n Simple_repeat Simple_repeat 1 49 0 9 894 199 219 167 30 chr5 40566673 40566739 -111970520 - MIRb SINE MIR -40 228 154 9 894 325 0 0 43 chr5 40566875 40566922 -111970337 + (TAA)n Simple_repeat Simple_repeat 3 47 0 9 894 540 30 0 0 chr5 40567224 40567290 -111969969 + (TTTTA)n Simple_repeat Simple_repeat 2 67 0 9 894 226 347 31 21 chr5 40567855 40567952 -111969307 + MIR SINE MIR 18 115 -147 9 894 1081 82 14 0 chr5 40568223 40568369 -111968890 - B1_Mus1 SINE Alu 0 148 1 9 894 213 307 153 52 chr5 40568708 40568976 -111968283 - L2 LINE L2 -443 2976 2682 9 894 214 283 208 0 chr5 40569623 40569729 -111967530 + MIR SINE MIR 9 136 -126 9 894 566 112 0 0 chr5 40570675 40570773 -111966486 - L1_Mus3 LINE L1 0 6638 6541 9 894 187 351 98 26 chr5 40571547 40571740 -111965519 - MIR SINE MIR -44 218 12 9 894 29 47 0 0 chr5 40572182 40572225 -111965034 + AT_rich Low_complexity Low_complexity 1 43 0 1 894 799 230 45 59 chr5 40573029 40573251 -111964008 - RLTR22_Mur LTR ERVK 0 1848 1630 1 894 7114 70 19 1 chr5 40573255 40574804 -111962455 - L1Md_F2 LINE L1 -12 6570 4983 1 894 3026 190 30 19 chr5 40574810 40575432 -111961827 - RLTR22_Mur LTR ERVK -229 1619 991 1 894 1075 166 144 0 chr5 40575433 40575662 -111961597 - Lx2A1 LINE L1 -23 6985 6724 1 894 10160 174 22 6 chr5 40575662 40577590 -111959669 - L1_Mur2 LINE L1 -27 5850 3892 1 894 3001 208 68 47 chr5 40577595 40578429 -111958830 - RLTR22_Mur LTR ERVK -831 1017 166 1 894 186 228 0 0 chr5 40578432 40578559 -111958700 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 1 894 546 238 19 56 chr5 40578571 40578731 -111958528 - RLTR22_Mur LTR ERVK -1694 154 1 1 894 262 305 69 99 chr5 40579602 40579733 -111957526 - RSINE1 SINE B4 -36 129 3 1 894 24 32 0 0 chr5 40579982 40580013 -111957246 + AT_rich Low_complexity Low_complexity 1 31 0 1 894 453 294 68 115 chr5 40580126 40580252 -111957007 + B3A SINE B2 2 135 -58 1 894 3116 37 3 3 chr5 40580252 40580636 -111956623 + L1Md_A LINE L1 6187 6570 -12 1 894 300 294 68 115 chr5 40580636 40580701 -111956558 + B2_Mm1a SINE B2 136 184 -9 1 894 224 329 0 26 chr5 40581242 40581320 -111955939 + PB1D10 SINE Alu 35 110 -7 1 894 4248 87 29 3 chr5 40581357 40581944 -111955315 + L1Md_F2 LINE L1 5948 6549 -33 1 894 20732 138 155 5 chr5 40582544 40585075 -111952184 + L1_Mus2 LINE L1 592 3182 -2701 1 894 192 97 0 0 chr5 40585075 40585106 -111952153 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 1 894 20732 118 120 18 chr5 40585106 40587809 -111949450 + L1_Mus2 LINE L1 3183 6566 0 1 894 471 253 17 3 chr5 40587909 40588038 -111949221 - ORR1D2 LTR MaLR -14 405 253 1 894 1968 279 41 70 chr5 40588104 40588733 -111948526 + RMER19C LTR ERVK 1 611 0 1 894 227 302 22 44 chr5 40588733 40588823 -111948436 - ORR1D2 LTR MaLR -283 101 14 1 894 1227 270 81 6 chr5 40589509 40589853 -111947406 - ORR1D1 LTR MaLR -2 417 4 1 894 852 370 50 38 chr5 40589985 40590541 -111946718 - MLT1E3 LTR MaLR -2 622 60 1 894 22 0 0 0 chr5 40590573 40590595 -111946664 + AT_rich Low_complexity Low_complexity 1 22 0 1 894 322 308 8 41 chr5 40592468 40592590 -111944669 + ID_B1 SINE B4 103 220 -4 1 894 261 256 23 68 chr5 40592601 40592689 -111944570 + ID SINE ID 3 86 -138 1 894 248 368 29 52 chr5 40593579 40593751 -111943508 - MLT1J LTR MaLR -106 406 239 1 894 3066 191 77 107 chr5 40595504 40596512 -111940747 + RMER21A LTR ERV1 2 947 0 1 894 24 0 0 0 chr5 40596872 40596896 -111940363 + AT_rich Low_complexity Low_complexity 1 24 0 1 894 294 29 0 0 chr5 40597496 40597531 -111939728 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 894 268 231 0 55 chr5 40597585 40597640 -111939619 - RSINE1 SINE B4 -111 54 3 1 894 243 321 93 21 chr5 40597644 40598073 -111939186 - L1M5 LINE L1 -2391 3755 3296 1 894 540 148 0 0 chr5 40598167 40598275 -111938984 + (GA)n Simple_repeat Simple_repeat 1 108 0 1 894 4393 274 62 11 chr5 40598339 40599574 -111937685 - Lx6 LINE L1 -191 7269 5972 1 894 4341 229 13 11 chr5 40599596 40600642 -111936617 - Lx6 LINE L1 -10 5870 4823 1 894 1090 245 70 30 chr5 40600653 40600952 -111936307 - RMER1C Other Other -312 1030 720 1 894 324 211 112 60 chr5 40600956 40601072 -111936187 + RMER1C Other Other 1218 1339 -3 1 894 559 253 54 59 chr5 40601067 40601306 -111935953 - Lx6 LINE L1 -1052 4825 4588 1 894 2581 180 29 151 chr5 40601308 40602094 -111935165 - RMER6C LTR ERVK 0 690 1 1 894 7689 184 8 39 chr5 40602095 40602196 -111935063 - Lx6 LINE L1 -1289 4591 4496 1 894 2444 169 142 14 chr5 40602196 40602712 -111934547 + RLTR31A_Mm LTR ERVK 3 584 0 1 894 7689 184 8 39 chr5 40602712 40603702 -111933557 - Lx6 LINE L1 -1385 4495 3516 1 894 1183 62 0 0 chr5 40603702 40603848 -111933411 + B1_Mus2 SINE Alu 1 146 -1 1 894 7689 184 8 39 chr5 40603848 40604477 -111932782 - Lx6 LINE L1 -2365 3515 2924 1 894 514 252 13 0 chr5 40604464 40604615 -111932644 - Lx6 LINE L1 -3110 2770 2618 1 894 372 22 0 0 chr5 40604631 40604676 -111932583 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 894 2386 201 23 93 chr5 40604680 40605432 -111931827 - Lx6 LINE L1 -3731 2149 1451 1 894 449 278 9 77 chr5 40605632 40605854 -111931405 - Lx6 LINE L1 -7445 283 77 1 894 487 299 150 0 chr5 40606649 40606836 -111930423 - B3 SINE B2 -1 215 1 1 894 14016 68 1 4 chr5 40607135 40608582 -111928677 + L1Md_F2 LINE L1 3746 5193 -690 1 894 2644 37 3 38 chr5 40608582 40608921 -111928338 - IAPLTR2b LTR ERVK 0 327 1 1 894 14016 68 1 4 chr5 40608921 40609321 -111927938 + L1Md_F2 LINE L1 5194 5586 -297 1 894 7810 53 4 11 chr5 40609321 40609900 -111927359 + L1Md_F2 LINE L1 5587 6165 -417 1 894 2951 39 7 79 chr5 40609900 40610320 -111926939 - RLTR10 LTR ERVK 0 390 1 1 894 7810 53 4 11 chr5 40610320 40610742 -111926517 + L1Md_F2 LINE L1 6166 6581 -1 1 894 1392 165 11 11 chr5 40610747 40611017 -111926242 + Lx5 LINE L1 5727 5996 -1054 1 894 941 173 36 20 chr5 40611887 40612082 -111925177 - Lx3C LINE L1 -3 6973 6776 1 894 26 30 0 0 chr5 40612197 40612230 -111925029 + AT_rich Low_complexity Low_complexity 1 33 0 1 894 307 253 0 39 chr5 40613308 40613386 -111923873 - MER58A DNA MER1_type -105 119 45 1 894 1246 234 146 19 chr5 40613786 40614156 -111923103 - MTD LTR MaLR -2 417 1 1 894 288 0 0 0 chr5 40614229 40614261 -111922998 + (T)n Simple_repeat Simple_repeat 1 32 0 1 894 387 60 0 0 chr5 40614635 40614685 -111922574 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1 894 195 42 0 0 chr5 40615698 40615722 -111921537 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1 894 2361 58 0 0 chr5 40616179 40616473 -111920786 - L1_Mus1 LINE L1 0 6567 6274 1 894 639 295 5 14 chr5 40617199 40617412 -111919847 + Lx6 LINE L1 5906 6116 -1344 1 894 1064 129 11 0 chr5 40617528 40617706 -111919553 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 894 27 0 0 0 chr5 40617840 40617867 -111919392 + AT_rich Low_complexity Low_complexity 1 27 0 1 894 1164 268 23 1 chr5 40617880 40618212 -111919047 - Lx3C LINE L1 -73 6927 6564 1 894 2912 180 101 28 chr5 40618237 40618882 -111918377 - RLTR17 LTR ERVK 0 692 1 1 894 3285 243 68 132 chr5 40619085 40620396 -111916863 + Lx6 LINE L1 6228 7454 -6 1 894 436 331 163 0 chr5 40620402 40620659 -111916600 - MLT1D LTR MaLR -28 477 179 1 894 324 266 85 42 chr5 40620771 40620889 -111916370 - B1F SINE Alu -8 141 19 1 894 385 218 57 53 chr5 40621182 40621343 -111915916 - MLT1A0 LTR MaLR -6 384 224 1 894 230 69 51 17 chr5 40621487 40621546 -111915713 + (TTTTG)n Simple_repeat Simple_repeat 4 64 0 1 894 5945 248 83 47 chr5 40621578 40624243 -111913016 - Lx5 LINE L1 -19 7031 4287 1 894 333 0 0 0 chr5 40624243 40624280 -111912979 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1 894 5945 207 88 16 chr5 40624280 40624305 -111912954 - Lx5 LINE L1 -1594 4286 4257 1 894 301 289 24 0 chr5 40624482 40624565 -111912694 - Tigger5 DNA MER2_type -1 2405 2321 1 894 588 319 34 30 chr5 40624625 40624861 -111912398 - Lx6 LINE L1 -136 7324 7088 1 894 499 336 78 48 chr5 40625371 40625665 -111911594 - Lx8 LINE L1 -58 7415 7113 1 894 7483 84 19 13 chr5 40625672 40626689 -111910570 + RLTR13D5 LTR ERVK 1 1023 0 1 894 1690 234 102 25 chr5 40627667 40628084 -111909175 + RLTR20B3 LTR ERVK 27 481 -96 1 894 468 35 0 0 chr5 40628084 40628142 -111909117 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 894 414 0 0 0 chr5 40628142 40628187 -111909072 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 894 1690 234 102 25 chr5 40628187 40628241 -111909018 + RLTR20B3 LTR ERVK 482 534 -43 1 894 199 331 146 24 chr5 40628651 40628815 -111908444 - MIR SINE MIR -58 204 21 1 894 1016 160 118 15 chr5 40628855 40629058 -111908201 - URR1A DNA MER1_type -1 225 2 1 894 288 247 71 61 chr5 40629175 40629274 -111907985 + MTC LTR MaLR 306 405 -14 1 894 933 299 202 44 chr5 40629288 40630371 -111906888 + MTC-int LTR MaLR 1 1254 -4 1 894 364 283 88 14 chr5 40630376 40630523 -111906736 + MTC LTR MaLR 2 159 -262 1 894 403 340 93 66 chr5 40630737 40631144 -111906115 - MLT1H2 LTR MaLR -69 420 3 1 894 291 261 65 89 chr5 40631362 40631576 -111905683 - Lx8 LINE L1 -1 7472 7264 1 895 22 0 0 0 chr5 40632672 40632694 -111904565 + AT_rich Low_complexity Low_complexity 1 22 0 1 895 4588 130 27 6 chr5 40632718 40633432 -111903827 - Lx2 LINE L1 -1 6996 6268 1 895 378 329 134 20 chr5 40633552 40633806 -111903453 - B4A SINE B4 -6 286 4 1 895 339 318 104 29 chr5 40636653 40636961 -111900298 + L1M2 LINE L1 4674 5004 -1139 1 895 317 321 161 25 chr5 40636981 40637342 -111899917 + L1MB3 LINE L1 5754 6163 -20 1 895 419 311 38 38 chr5 40637389 40637507 -111899752 + B3A SINE B2 40 163 -35 1 895 849 127 0 0 chr5 40637507 40637641 -111899618 + (TCCC)n Simple_repeat Simple_repeat 3 136 0 1 895 419 311 38 38 chr5 40637641 40637653 -111899606 + B3A SINE B2 164 174 -24 1 895 224 54 0 51 chr5 40637653 40637692 -111899567 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1 895 419 311 38 38 chr5 40637692 40637717 -111899542 + B3A SINE B2 175 196 -2 1 895 260 183 90 31 chr5 40637837 40637995 -111899264 + L1M5 LINE L1 5296 5460 -704 1 895 230 229 0 28 chr5 40639378 40639450 -111897809 + T-rich Low_complexity Low_complexity 1 70 0 1 895 204 40 0 0 chr5 40639540 40639565 -111897694 + (T)n Simple_repeat Simple_repeat 1 25 0 1 895 3940 151 27 12 chr5 40639601 40640265 -111896994 - Lx4A LINE L1 0 7058 6385 1 895 244 194 0 16 chr5 40640276 40640339 -111896920 - L1MB7 LINE L1 -254 5930 5869 1 895 829 307 0 0 chr5 40640556 40640768 -111896491 + Lx6 LINE L1 7155 7366 -94 1 895 503 383 80 69 chr5 40641479 40642102 -111895157 + L1M3de LINE L1 1063 1692 -4961 1 895 319 315 22 0 chr5 40642117 40642206 -111895053 + PB1D10 SINE Alu 18 108 -9 1 895 1084 73 0 0 chr5 40642217 40642354 -111894905 + B1_Mus1 SINE Alu 2 138 -10 1 895 279 0 0 0 chr5 40642354 40642385 -111894874 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 895 848 229 13 11 chr5 40642783 40643000 -111894259 + Lx3C LINE L1 901 1113 -5973 1 895 9872 179 22 92 chr5 40642994 40644915 -111892344 + Lx3C LINE L1 2459 4232 -1654 1 895 702 100 0 8 chr5 40644915 40645036 -111892223 + L1_Mus4 LINE L1 6515 6634 -2 1 895 9872 179 22 92 chr5 40645036 40645650 -111891609 + Lx3C LINE L1 4233 4817 -1069 1 895 2897 86 2 21 chr5 40645655 40646084 -111891175 + BGLII LTR ERVK 1 421 0 1 895 955 113 0 14 chr5 40646120 40646264 -111890995 + B1_Mus1 SINE Alu 1 142 -6 1 895 314 23 23 0 chr5 40646267 40646310 -111890949 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 895 342 176 0 0 chr5 40646615 40646629 -111890630 + A-rich Low_complexity Low_complexity 1 14 0 1 895 1215 28 14 0 chr5 40646629 40646774 -111890485 + B1_Mm SINE Alu 1 147 0 1 895 342 176 0 0 chr5 40646774 40646861 -111890398 + A-rich Low_complexity Low_complexity 15 101 0 1 895 865 179 0 43 chr5 40646901 40647111 -111890148 + RMER3D-int LTR ERVK 651 851 -1991 1 895 408 229 117 46 chr5 40647175 40647372 -111889887 + RMER3D-int LTR ERVK 633 843 -1999 1 895 512 106 27 0 chr5 40647468 40647578 -111889681 + RMER3D-int LTR ERVK 489 583 -2259 1 895 712 108 16 8 chr5 40647578 40647699 -111889560 + (GGAAA)n Simple_repeat Simple_repeat 1 122 0 2 895 189 0 0 0 chr5 40647702 40647723 -111889536 + (GGGGA)n Simple_repeat Simple_repeat 1 21 0 2 895 1889 181 112 17 chr5 40647766 40648241 -111889018 + RMER3D-int LTR ERVK 1014 1533 -1309 1 895 634 192 42 60 chr5 40648273 40648439 -111888820 + RMER3D-int LTR ERVK 1532 1694 -1148 1 895 2845 224 45 43 chr5 40648441 40649351 -111887908 + RMER3D-int LTR ERVK 1926 2837 -5 1 895 2907 75 9 33 chr5 40649355 40649783 -111887476 + BGLII LTR ERVK 4 421 0 1 895 7295 170 28 3 chr5 40649783 40651888 -111885371 + Lx3C LINE L1 4817 6976 0 1 895 312 322 28 7 chr5 40652533 40652643 -111884616 + L2a LINE L2 3219 3382 -44 2 895 432 0 0 0 chr5 40654395 40654443 -111882816 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 895 207 70 0 104 chr5 40654500 40654548 -111882711 + T-rich Low_complexity Low_complexity 2 44 0 2 895 634 250 150 54 chr5 40655569 40655832 -111881427 + Lx9 LINE L1 7198 7515 -129 2 895 339 25 0 0 chr5 40655832 40655872 -111881387 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 895 634 250 150 54 chr5 40655872 40656014 -111881245 + Lx9 LINE L1 7516 7642 -2 2 895 323 328 33 8 chr5 40656575 40656695 -111880564 + RSINE1 SINE B4 5 127 -38 2 895 533 119 0 10 chr5 40656719 40656821 -111880438 + (CA)n Simple_repeat Simple_repeat 1 101 0 2 895 459 0 0 0 chr5 40658127 40658178 -111879081 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 895 421 321 92 64 chr5 40658179 40658352 -111878907 - B3 SINE B2 -38 178 1 2 895 467 321 122 28 chr5 40658736 40659130 -111878129 + MLT1C LTR MaLR 3 433 -34 2 895 539 300 12 53 chr5 40659373 40659542 -111877717 + RSINE1 SINE B4 4 165 0 2 895 428 329 105 12 chr5 40659572 40659744 -111877515 + B3A SINE B2 3 190 -8 2 895 639 26 0 0 chr5 40659750 40659827 -111877432 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 895 196 278 128 29 chr5 40662869 40663033 -111874226 - MIR SINE MIR -75 187 14 2 895 4760 100 11 0 chr5 40667402 40668060 -111869199 - L1_Mus3 LINE L1 -5 6633 5969 2 895 3449 80 8 3 chr5 40668060 40668543 -111868716 + L1_Mus3 LINE L1 5585 6040 -598 2 895 309 374 17 0 chr5 40668623 40668738 -111868521 + PB1D10 SINE Alu 1 117 0 2 895 183 129 0 0 chr5 40668810 40668841 -111868418 + (CAAG)n Simple_repeat Simple_repeat 1 31 0 2 895 1262 203 125 34 chr5 40669102 40669454 -111867805 + ORR1C2 LTR MaLR 1 384 0 2 895 429 20 0 0 chr5 40669601 40669651 -111867608 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 2 895 205 167 0 0 chr5 40671356 40671392 -111865867 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 895 276 289 75 44 chr5 40673085 40673244 -111864015 + L1MEg LINE L1 393 556 -5528 2 895 1325 62 0 11 chr5 40674045 40674226 -111863033 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 895 772 278 10 17 chr5 40674739 40675010 -111862249 + MTE2b LTR MaLR 62 375 -4 2 895 26 0 0 0 chr5 40675387 40675413 -111861846 + AT_rich Low_complexity Low_complexity 1 26 0 2 895 282 179 0 0 chr5 40676088 40676144 -111861115 + GA-rich Low_complexity Low_complexity 2 57 0 2 895 1164 65 0 0 chr5 40676144 40676298 -111860961 + (GGAA)n Simple_repeat Simple_repeat 4 157 0 2 895 23 33 0 0 chr5 40676756 40676786 -111860473 + AT_rich Low_complexity Low_complexity 1 30 0 2 895 1102 102 0 0 chr5 40676918 40677065 -111860194 + B1_Mus2 SINE Alu 1 147 0 2 895 180 0 0 0 chr5 40677065 40677085 -111860174 + (A)n Simple_repeat Simple_repeat 1 20 0 2 895 24 67 0 0 chr5 40677108 40677153 -111860106 + AT_rich Low_complexity Low_complexity 1 45 0 2 895 389 266 6 13 chr5 40677157 40677313 -111859946 + Lx9 LINE L1 7489 7643 -1 2 895 3123 56 5 2 chr5 40677618 40678013 -111859246 - MTA_Mm LTR MaLR 0 396 1 2 895 1284 347 52 44 chr5 40679849 40679969 -111857290 + Lx7 LINE L1 6141 6255 -1441 2 895 1131 44 19 12 chr5 40679969 40680131 -111857128 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 2 895 1284 347 52 44 chr5 40680131 40680912 -111856347 + Lx7 LINE L1 6256 7049 -647 2 895 228 291 34 34 chr5 40680914 40681003 -111856256 + Lx8 LINE L1 7118 7206 -267 2 895 34 42 0 0 chr5 40681098 40681146 -111856113 + AT_rich Low_complexity Low_complexity 1 48 0 2 895 26 82 0 0 chr5 40683479 40683540 -111853719 + AT_rich Low_complexity Low_complexity 1 61 0 2 895 23 33 0 0 chr5 40683808 40683838 -111853421 + AT_rich Low_complexity Low_complexity 1 30 0 2 895 695 264 74 5 chr5 40684228 40684430 -111852829 + B3 SINE B2 1 216 0 2 895 24 0 0 0 chr5 40685970 40685994 -111851265 + AT_rich Low_complexity Low_complexity 1 24 0 2 895 458 17 0 17 chr5 40687795 40687855 -111849404 + (TAA)n Simple_repeat Simple_repeat 2 60 0 2 895 191 81 54 0 chr5 40688662 40688699 -111848560 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 895 510 17 0 0 chr5 40689319 40689378 -111847881 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 895 338 370 45 93 chr5 40689457 40689704 -111847555 - B4A SINE B4 -56 236 2 2 895 216 0 0 0 chr5 40689717 40689741 -111847518 + (A)n Simple_repeat Simple_repeat 1 24 0 2 895 3712 252 85 30 chr5 40690763 40691860 -111845399 + Lx5 LINE L1 5868 6998 -52 2 895 399 245 10 0 chr5 40692190 40692292 -111844967 + L1_Mur1 LINE L1 215 317 -6667 2 895 9807 100 40 41 chr5 40692337 40694370 -111842889 + L1_Mur1 LINE L1 673 2746 -3140 2 895 14210 104 6 4 chr5 40694377 40696489 -111840770 + L1_Mur1 LINE L1 3688 5802 -84 2 895 4049 135 81 0 chr5 40696476 40697143 -111840116 - L1_Mm LINE L1 -42 5841 5121 2 895 1412 128 8 4 chr5 40697143 40697379 -111839880 + L1_Mus3 LINE L1 6389 6625 -13 2 895 4734 63 11 0 chr5 40697377 40697984 -111839275 + L1Md_F2 LINE L1 5969 6582 0 2 895 7677 125 14 13 chr5 40697984 40699210 -111838049 + Lx3_Mus LINE L1 5783 7009 0 2 895 406 298 30 0 chr5 40699491 40699659 -111837600 + (TG)n Simple_repeat Simple_repeat 2 174 0 2 895 22 35 0 0 chr5 40700909 40700938 -111836321 + AT_rich Low_complexity Low_complexity 1 29 0 2 895 1739 271 74 12 chr5 40701508 40702008 -111835251 - Lx2B LINE L1 -3 6997 6467 2 895 357 43 0 0 chr5 40702762 40702809 -111834450 + (T)n Simple_repeat Simple_repeat 1 47 0 2 895 996 249 63 79 chr5 40703975 40704019 -111833240 - ORR1D1 LTR MaLR 0 374 331 2 895 2511 67 0 0 chr5 40704019 40704349 -111832910 + L1Md_F2 LINE L1 6253 6582 0 2 895 996 249 63 79 chr5 40704349 40704684 -111832575 - ORR1D1 LTR MaLR -44 330 3 2 895 1092 43 0 0 chr5 40705217 40705355 -111831904 + (TG)n Simple_repeat Simple_repeat 1 138 0 2 895 23 78 0 0 chr5 40705895 40705946 -111831313 + AT_rich Low_complexity Low_complexity 1 51 0 2 895 261 356 11 0 chr5 40706015 40706105 -111831154 + RSINE1 SINE B4 3 93 -72 2 895 195 105 53 0 chr5 40706257 40706314 -111830945 + T-rich Low_complexity Low_complexity 1 60 0 2 895 1049 97 7 14 chr5 40706314 40706461 -111830798 - B1_Mus2 SINE Alu -1 146 1 2 895 27 49 0 0 chr5 40706620 40706661 -111830598 + AT_rich Low_complexity Low_complexity 1 41 0 2 895 745 207 0 92 chr5 40707112 40707341 -111829918 + Lx LINE L1 6417 6624 -30 2 895 417 352 0 0 chr5 40708965 40709104 -111828155 - B1F SINE Alu -10 139 1 2 895 198 71 0 0 chr5 40709528 40709556 -111827703 + (CAT)n Simple_repeat Simple_repeat 2 29 0 2 895 265 382 36 52 chr5 40709798 40709991 -111827268 - MTB_Mm LTR MaLR -79 328 139 2 895 274 291 28 44 chr5 40710313 40710465 -111826794 - MTE-int LTR MaLR -1112 146 2 2 895 2178 130 3 0 chr5 40710555 40710871 -111826388 - Lx2 LINE L1 -338 6659 6343 2 895 28 48 0 0 chr5 40711626 40711668 -111825591 + AT_rich Low_complexity Low_complexity 1 42 0 2 895 459 0 0 0 chr5 40711762 40711813 -111825446 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 895 228 35 0 0 chr5 40712218 40712247 -111825012 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 895 27 49 0 0 chr5 40712252 40712293 -111824966 + AT_rich Low_complexity Low_complexity 1 41 0 2 895 214 250 50 50 chr5 40713088 40713168 -111824091 + B3A SINE B2 5 84 -114 2 895 21 0 0 0 chr5 40714175 40714196 -111823063 + AT_rich Low_complexity Low_complexity 1 21 0 2 895 462 86 0 0 chr5 40714279 40714313 -111822946 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 895 444 37 0 0 chr5 40714313 40714367 -111822892 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 895 462 86 0 0 chr5 40714367 40714402 -111822857 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 895 368 179 0 15 chr5 40715452 40715520 -111821739 - HAL1-3A_ME LINE L1 -817 2041 1975 2 895 708 138 0 0 chr5 40715520 40715636 -111821623 + (TA)n Simple_repeat Simple_repeat 1 116 0 2 895 400 368 50 0 chr5 40716064 40716246 -111821013 + MTD LTR MaLR 1 191 -228 2 895 6076 118 39 16 chr5 40716234 40717224 -111820035 - RLTR13D2 LTR ERVK -10 1013 1 2 895 769 234 139 9 chr5 40717224 40717440 -111819819 + MTD LTR MaLR 176 419 0 2 895 453 90 0 0 chr5 40718515 40718582 -111818677 + (TGAA)n Simple_repeat Simple_repeat 1 67 0 2 895 384 40 0 0 chr5 40718930 40718980 -111818279 + (CTCA)n Simple_repeat Simple_repeat 1 50 0 2 895 998 40 0 0 chr5 40719371 40719497 -111817762 + B1_Mm SINE Alu 1 126 -21 2 895 1574 16 11 0 chr5 40719500 40719682 -111817577 - B2_Mm1t SINE B2 -8 185 2 2 895 258 288 0 0 chr5 40720022 40720095 -111817164 + GA-rich Low_complexity Low_complexity 3 75 0 2 895 432 97 0 0 chr5 40720108 40720170 -111817089 + (TCC)n Simple_repeat Simple_repeat 2 63 0 2 895 200 163 23 0 chr5 40720205 40720248 -111817011 + GA-rich Low_complexity Low_complexity 2 45 0 2 895 246 62 0 0 chr5 40720910 40720942 -111816317 + (TGG)n Simple_repeat Simple_repeat 3 34 0 2 895 361 260 57 9 chr5 40721222 40721327 -111815932 - MLT1D LTR MaLR -46 459 350 2 895 237 289 181 104 chr5 40721406 40721599 -111815660 - MLT1D LTR MaLR -297 208 1 2 895 405 138 0 84 chr5 40721719 40721790 -111815469 - B1_Mur1 SINE Alu -5 144 80 2 895 308 77 15 44 chr5 40722071 40722139 -111815120 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 895 418 308 104 15 chr5 40722211 40722412 -111814847 + MIR SINE MIR 6 224 -38 2 895 589 317 39 39 chr5 40723265 40723577 -111813682 - Lx8 LINE L1 -309 7164 6853 2 895 234 304 103 45 chr5 40724844 40724999 -111812260 - L1ME1 LINE L1 -60 6119 5956 2 895 310 412 28 21 chr5 40724999 40725284 -111811975 - L1ME1 LINE L1 -386 5793 5507 2 895 354 314 8 41 chr5 40725284 40725407 -111811852 - MLT1A1 LTR MaLR -41 367 249 2 895 381 43 0 0 chr5 40725489 40725536 -111811723 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 895 5488 250 28 68 chr5 40725553 40726827 -111810432 - Lx6 LINE L1 -293 7167 5926 3 895 1877 188 88 3 chr5 40726827 40727190 -111810069 + ORR1B1 LTR MaLR 1 394 0 3 895 5536 207 57 29 chr5 40727190 40728574 -111808685 - Lx6 LINE L1 -1535 5925 4500 3 895 1086 281 30 81 chr5 40728611 40728982 -111808277 + RMER19C LTR ERVK 191 611 0 3 895 4735 210 130 31 chr5 40728982 40730588 -111806671 - Lx6 LINE L1 -2191 3689 1925 3 895 7809 16 0 0 chr5 40730606 40731495 -111805764 + L1Md_A LINE L1 5694 6582 0 3 895 900 246 10 0 chr5 40731496 40731695 -111805564 + RMER4B LTR ERVK 33 233 -352 3 895 2999 224 71 19 chr5 40731699 40732491 -111804768 - Lx6 LINE L1 -6419 1309 477 3 895 1614 290 33 39 chr5 40732499 40733109 -111804150 - Lx6 LINE L1 -7059 669 64 3 895 243 189 135 0 chr5 40733125 40733199 -111804060 - L1MD LINE L1 -842 5304 5221 3 895 207 88 0 0 chr5 40733207 40733241 -111804018 + (T)n Simple_repeat Simple_repeat 1 34 0 3 895 510 295 70 13 chr5 40733967 40734125 -111803134 - Lx8 LINE L1 -135 7338 7172 3 895 229 337 24 0 chr5 40734157 40734240 -111803019 - Lx7 LINE L1 -710 6986 6902 3 895 403 338 129 15 chr5 40734292 40734625 -111802634 - L1MEf LINE L1 -4683 1517 1147 3 895 310 333 0 12 chr5 40734968 40735050 -111802209 + RSINE1 SINE B4 54 134 -31 3 895 180 125 0 0 chr5 40735055 40735087 -111802172 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 895 26 0 0 0 chr5 40735637 40735663 -111801596 + AT_rich Low_complexity Low_complexity 1 26 0 3 895 258 248 29 40 chr5 40736457 40736562 -111800697 + MLT1D LTR MaLR 361 501 -4 3 895 206 121 0 0 chr5 40737077 40737110 -111800149 + (T)n Simple_repeat Simple_repeat 1 33 0 3 895 1514 167 17 93 chr5 40738545 40738901 -111798358 - ORR1A4 LTR MaLR 0 329 1 3 895 432 360 13 13 chr5 40738941 40739093 -111798166 + MER70B LTR ERVL 3 154 -424 3 895 192 349 24 0 chr5 40739487 40739570 -111797689 - MIRc SINE MIR -71 197 113 3 895 22 0 0 0 chr5 40739834 40739856 -111797403 + AT_rich Low_complexity Low_complexity 1 22 0 3 895 1930 167 37 17 chr5 40739898 40740300 -111796959 + RLTR31_Mm LTR ERVK 1 410 -151 3 895 1389 63 5 0 chr5 40740404 40740594 -111796665 + L1_Mus2 LINE L1 6376 6566 0 3 895 862 133 0 6 chr5 40740639 40740798 -111796461 + L1_Mus4 LINE L1 6479 6636 0 3 895 702 55 0 0 chr5 40740810 40740901 -111796358 + (GA)n Simple_repeat Simple_repeat 1 91 0 3 895 23 33 0 0 chr5 40741272 40741302 -111795957 + AT_rich Low_complexity Low_complexity 1 30 0 3 895 5716 6 0 0 chr5 40741999 40742635 -111794624 + L1Md_T LINE L1 5947 6582 0 3 895 6398 107 21 16 chr5 40742636 40743603 -111793656 + Lx LINE L1 5684 6654 0 3 895 261 0 0 0 chr5 40743603 40743632 -111793627 + (A)n Simple_repeat Simple_repeat 1 29 0 3 895 8247 43 4 2 chr5 40744097 40745517 -111791742 - L1Md_F3 LINE L1 -1 6583 5161 3 895 4092 44 2 0 chr5 40745517 40746014 -111791245 - L1Md_F2 LINE L1 -1 6581 6084 3 895 1935 95 0 0 chr5 40746018 40746280 -111790979 + L1_Mm LINE L1 4857 5118 -765 3 895 496 150 0 1 chr5 40746279 40746373 -111790886 - L1Md_F3 LINE L1 -710 5173 5075 3 895 1115 101 0 0 chr5 40746575 40746723 -111790536 + B1_Mus1 SINE Alu 1 148 0 3 895 260 236 83 19 chr5 40746948 40747056 -111790203 + L1MA9 LINE L1 2151 2240 -4795 3 895 237 302 0 0 chr5 40747851 40747904 -111789355 + B4 SINE B4 8 60 -232 3 895 997 88 0 86 chr5 40747907 40748069 -111789190 + B1_Mus1 SINE Alu 1 148 0 3 895 551 344 56 5 chr5 40748101 40748314 -111788945 + B4 SINE B4 42 265 -27 3 895 567 0 0 0 chr5 40748342 40748405 -111788854 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 895 411 239 37 3 chr5 40748544 40748675 -111788584 + L1MA9 LINE L1 3321 3453 -3395 3 895 498 33 0 0 chr5 40748790 40748850 -111788409 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 895 263 333 0 0 chr5 40749052 40749118 -111788141 + ID4 SINE ID 17 82 -1 3 895 311 350 43 12 chr5 40749166 40749328 -111787931 + B3A SINE B2 10 176 -22 3 895 280 250 84 48 chr5 40749539 40749766 -111787493 + L1MA9 LINE L1 3871 4105 -2737 3 895 251 309 179 20 chr5 40749854 40750207 -111787052 + L1MA9 LINE L1 4125 4533 -2312 3 895 357 319 35 0 chr5 40750306 40750450 -111786809 - B3 SINE B2 0 216 68 3 895 493 305 107 48 chr5 40750751 40751312 -111785947 + L1MA9 LINE L1 6335 6928 -86 3 895 35 24 0 0 chr5 40751407 40751449 -111785810 + AT_rich Low_complexity Low_complexity 1 42 0 3 895 242 265 0 0 chr5 40751841 40751909 -111785350 + CT-rich Low_complexity Low_complexity 1 68 0 3 895 382 250 18 35 chr5 40751957 40751985 -111785274 + (TCTCTG)n Simple_repeat Simple_repeat 1 28 0 3 895 291 85 0 0 chr5 40751985 40752032 -111785227 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 895 382 250 18 35 chr5 40752032 40752173 -111785086 + (TCTCTG)n Simple_repeat Simple_repeat 1 138 0 3 895 275 10 0 0 chr5 40752326 40752361 -111784898 - L1Md_T LINE L1 -228 6354 6319 3 895 2217 0 0 0 chr5 40752361 40752607 -111784652 + L1Md_A LINE L1 6337 6582 0 3 895 4056 106 11 0 chr5 40752611 40753301 -111783958 - Lx LINE L1 -507 6147 5452 3 895 321 344 32 8 chr5 40753877 40754000 -111783259 - MLT1A0 LTR MaLR 0 365 240 3 895 285 0 0 62 chr5 40754243 40754291 -111782968 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 3 895 320 253 12 12 chr5 40754657 40754741 -111782518 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 895 243 0 0 0 chr5 40755277 40755304 -111781955 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 895 1022 228 60 33 chr5 40755498 40755829 -111781430 + Lx9 LINE L1 7303 7642 -2 3 895 2860 239 83 8 chr5 40755872 40756525 -111780734 - RMER1B Other Other -11 1055 354 3 895 198 143 0 0 chr5 40756528 40756563 -111780696 + (CATAC)n Simple_repeat Simple_repeat 2 36 0 3 895 561 275 55 27 chr5 40756603 40756749 -111780510 - RMER1A Other Other -878 152 3 3 895 585 249 1 16 chr5 40756764 40756928 -111780331 + MT2A LTR ERVL 343 545 -56 3 895 204 67 0 0 chr5 40756928 40756958 -111780301 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 895 585 221 0 22 chr5 40756958 40756973 -111780286 + MT2A LTR ERVL 465 478 -55 3 895 533 318 71 5 chr5 40758142 40758338 -111778921 - B3 SINE B2 0 216 8 3 895 446 302 283 31 chr5 40758374 40758593 -111778666 + B4A SINE B4 1 274 -18 3 895 852 198 86 22 chr5 40759570 40759802 -111777457 - Lx7 LINE L1 -7 7689 7443 3 895 569 72 0 12 chr5 40759967 40760051 -111777208 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 895 21 0 0 0 chr5 40760325 40760346 -111776913 + AT_rich Low_complexity Low_complexity 1 21 0 3 895 693 281 50 63 chr5 40761149 40761513 -111775746 - RLTR10D LTR ERVK 0 359 1 3 895 1524 270 62 27 chr5 40761601 40762193 -111775066 + Lx2B LINE L1 6331 6980 -20 3 895 1977 135 15 21 chr5 40762392 40762468 -111774791 + ORR1A2 LTR MaLR 1 80 -247 3 895 5101 147 78 1 chr5 40762468 40763358 -111773901 + RMER17B LTR ERVK 1 958 0 3 111 1977 135 15 21 chr5 40763358 40763606 -111773653 + ORR1A2 LTR MaLR 81 323 -4 3 896 3477 239 98 69 chr5 40763645 40763684 -111773575 + Lx9 LINE L1 6376 6417 -1227 3 896 345 47 0 0 chr5 40763684 40763727 -111773532 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 896 3477 239 98 69 chr5 40763727 40764918 -111772341 + Lx9 LINE L1 6418 7642 -2 3 896 1105 279 0 46 chr5 40764926 40765208 -111772051 + MT2A LTR ERVL 157 425 -108 3 896 2193 118 13 0 chr5 40765676 40765991 -111771268 - L1_Mus4 LINE L1 -412 6224 5906 3 896 1609 97 16 12 chr5 40765992 40766243 -111771016 + L1_Mus3 LINE L1 6381 6632 -6 3 896 1034 303 7 17 chr5 40766758 40767050 -111770209 + Lx6 LINE L1 7142 7430 -30 3 896 3268 245 45 19 chr5 40767036 40768359 -111768900 + Lx5 LINE L1 5612 7045 -5 3 896 233 98 0 89 chr5 40769438 40769483 -111767776 + MTC LTR MaLR 380 420 -1 3 896 1908 191 31 26 chr5 40769558 40769944 -111767315 - MTC LTR MaLR -33 388 1 3 896 442 241 0 0 chr5 40770189 40770272 -111766987 + B3 SINE B2 9 91 -125 3 896 288 102 0 0 chr5 40770982 40771031 -111766228 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 3 896 1840 203 24 49 chr5 40771222 40771631 -111765628 + Lx5 LINE L1 6610 7008 -42 3 896 402 21 0 0 chr5 40771644 40771691 -111765568 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 896 288 277 32 0 chr5 40772018 40772112 -111765147 + MIR SINE MIR 46 142 -66 3 896 266 230 68 0 chr5 40772135 40772209 -111765050 + AmnSINE1 SINE SINE 497 575 0 3 896 249 269 11 0 chr5 40772705 40772798 -111764461 + (TA)n Simple_repeat Simple_repeat 1 94 0 3 896 285 29 0 0 chr5 40773133 40773167 -111764092 + (TAG)n Simple_repeat Simple_repeat 3 36 0 3 896 1306 72 33 0 chr5 40773823 40774003 -111763256 - B2_Mm1t SINE B2 -7 186 1 3 896 6193 127 50 44 chr5 40774764 40776265 -111760994 - Lx LINE L1 -4 6650 5143 3 896 10307 162 23 19 chr5 40776265 40778249 -111759010 + Lx LINE L1 3142 5133 -750 3 896 240 338 0 0 chr5 40778305 40778376 -111758883 + RLTR24 LTR ERV1 1 71 -458 3 896 299 385 8 8 chr5 40778777 40778908 -111758351 - B4 SINE B4 -98 194 64 3 896 333 0 0 0 chr5 40779568 40779605 -111757654 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 3 896 209 149 106 0 chr5 40779607 40779701 -111757558 + (TA)n Simple_repeat Simple_repeat 1 104 0 3 896 313 309 0 18 chr5 40780515 40780627 -111756632 - L1MC LINE L1 -2099 5783 5674 3 896 731 278 198 6 chr5 40780836 40781184 -111756075 - MTD LTR MaLR -1 418 4 3 896 195 42 0 0 chr5 40781772 40781796 -111755463 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 896 333 0 0 0 chr5 40781926 40781963 -111755296 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 896 21 0 0 0 chr5 40783129 40783150 -111754109 + AT_rich Low_complexity Low_complexity 1 21 0 3 896 998 227 258 6 chr5 40783367 40783700 -111753559 - MTC LTR MaLR -4 417 1 3 896 682 296 24 28 chr5 40784568 40784780 -111752479 + B3 SINE B2 4 214 -2 3 896 221 393 19 9 chr5 40785177 40785285 -111751974 + MIRc SINE MIR 78 186 -82 3 896 183 318 32 0 chr5 40785319 40785382 -111751877 - L2a LINE L2 -45 3381 3317 3 896 1028 82 0 0 chr5 40785396 40785530 -111751729 + B1_Mus2 SINE Alu 1 134 -13 3 896 504 0 0 0 chr5 40785530 40785586 -111751673 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 3 896 292 261 262 33 chr5 40786215 40786425 -111750834 + ORR1E LTR MaLR 1 258 -101 3 896 1032 109 0 0 chr5 40786878 40787015 -111750244 + B1_Mus2 SINE Alu 2 138 -9 4 896 378 0 0 0 chr5 40787015 40787057 -111750202 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 4 896 24 53 0 0 chr5 40787520 40787558 -111749701 + AT_rich Low_complexity Low_complexity 1 38 0 4 896 222 37 0 0 chr5 40787936 40787963 -111749296 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 896 24 53 0 0 chr5 40787975 40788013 -111749246 + AT_rich Low_complexity Low_complexity 1 38 0 4 896 189 0 0 0 chr5 40788611 40788632 -111748627 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 4 896 475 356 9 38 chr5 40789906 40790116 -111747143 - B3 SINE B2 -12 204 1 4 896 708 324 53 34 chr5 40791147 40791409 -111745850 - B4A SINE B4 -3 289 23 4 896 23 33 0 0 chr5 40791618 40791648 -111745611 + AT_rich Low_complexity Low_complexity 1 30 0 4 896 21 0 0 0 chr5 40791664 40791685 -111745574 + AT_rich Low_complexity Low_complexity 1 21 0 4 896 26 50 0 0 chr5 40792285 40792325 -111744934 + AT_rich Low_complexity Low_complexity 1 40 0 4 896 180 135 0 0 chr5 40793518 40793555 -111743704 + (A)n Simple_repeat Simple_repeat 1 37 0 4 896 205 348 146 25 chr5 40793622 40793861 -111743398 - L2 LINE L2 -343 3076 2809 4 896 610 278 33 9 chr5 40795451 40795662 -111741597 + B3 SINE B2 1 216 0 4 896 24 77 0 0 chr5 40795834 40795886 -111741373 + AT_rich Low_complexity Low_complexity 1 52 0 4 896 600 88 0 0 chr5 40795935 40796015 -111741244 - L1_Mus3 LINE L1 -433 6205 6126 4 896 1251 114 10 5 chr5 40796015 40796218 -111741041 + L1_Mus3 LINE L1 6428 6631 -7 4 896 233 89 0 22 chr5 40796590 40796636 -111740623 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 4 896 1205 34 0 20 chr5 40796636 40796786 -111740473 - B1_Mm SINE Alu 0 147 1 4 896 639 235 58 29 chr5 40796995 40797166 -111740093 - U2 snRNA snRNA -10 178 3 4 896 450 307 102 17 chr5 40797171 40797556 -111739703 + MLT2B1 LTR ERVL 58 567 0 4 896 37813 18 1 7 chr5 40798464 40803860 -111733399 + L1Md_A LINE L1 227 5586 -297 4 896 8605 24 0 0 chr5 40803860 40804855 -111732404 + L1Md_A LINE L1 5587 6581 -1 4 896 453 151 0 0 chr5 40805018 40805104 -111732155 + (TG)n Simple_repeat Simple_repeat 2 87 0 4 896 913 247 165 8 chr5 40805109 40805370 -111731889 - MTD LTR MaLR -14 405 104 4 896 903 119 0 0 chr5 40805367 40805501 -111731758 + B1_Mus1 SINE Alu 8 141 -7 4 896 224 77 0 25 chr5 40805517 40805557 -111731702 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 4 896 260 311 14 0 chr5 40805564 40805638 -111731621 - MTD LTR MaLR -308 111 37 4 896 239 359 22 0 chr5 40805840 40805932 -111731327 + ORR1E LTR MaLR 266 359 0 4 896 320 244 219 38 chr5 40807436 40807619 -111729640 + B3 SINE B2 1 216 0 4 896 22 56 0 0 chr5 40807759 40807795 -111729464 + AT_rich Low_complexity Low_complexity 1 36 0 4 896 344 169 0 13 chr5 40807906 40807984 -111729275 + (TATTG)n Simple_repeat Simple_repeat 4 80 0 4 896 694 319 26 10 chr5 40808013 40808216 -111729043 + B3 SINE B2 5 193 -2 4 896 1077 123 0 0 chr5 40808426 40808597 -111728662 - MusHAL1 LINE L1 -488 2224 2054 4 896 7482 170 17 11 chr5 40808593 40810805 -111726454 + Lx2A LINE L1 4785 7008 0 4 896 380 393 34 31 chr5 40811199 40811493 -111725766 - L4 LINE RTE -1492 537 243 4 896 26 50 0 0 chr5 40811813 40811853 -111725406 + AT_rich Low_complexity Low_complexity 1 40 0 4 896 477 374 78 71 chr5 40812100 40812610 -111724649 - MER67D LTR ERV1 0 514 1 4 896 1092 171 58 50 chr5 40813682 40813940 -111723319 + Lx2 LINE L1 6737 6996 -1 4 896 295 380 77 5 chr5 40814147 40814343 -111722916 - LTR16C LTR ERVL -6 483 274 4 896 2271 283 95 21 chr5 40816059 40816851 -111720408 + Lx7 LINE L1 6406 7255 -441 4 896 227 192 77 0 chr5 40816885 40816937 -111720322 - MIR SINE MIR -164 98 43 4 896 220 265 0 14 chr5 40817036 40817105 -111720154 + CT-rich Low_complexity Low_complexity 1 68 0 4 896 288 0 0 0 chr5 40817120 40817152 -111720107 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4 896 1941 30 0 0 chr5 40817165 40817397 -111719862 - L1Md_F3 LINE L1 -16 6568 6337 4 896 509 259 0 0 chr5 40817397 40817504 -111719755 + Lx7 LINE L1 7251 7357 -339 4 896 36 53 0 0 chr5 40817506 40817563 -111719696 + AT_rich Low_complexity Low_complexity 1 57 0 4 896 1203 140 32 0 chr5 40817563 40817842 -111719417 + MusHAL1 LINE L1 519 809 -2544 4 896 757 137 0 28 chr5 40817842 40817985 -111719274 + MusHAL1 LINE L1 1005 1143 -2210 4 896 1771 184 18 30 chr5 40817983 40818419 -111718840 + L1_Mur1 LINE L1 1898 2328 -3558 4 896 366 113 0 0 chr5 40818417 40818470 -111718789 + L1Md_F2 LINE L1 6402 6454 -128 4 896 904 88 0 14 chr5 40818470 40818609 -111718650 + L1Md_F2 LINE L1 6422 6558 -24 4 896 212 333 56 0 chr5 40818620 40818692 -111718567 + MIR SINE MIR 20 95 -167 4 896 23 0 0 0 chr5 40818733 40818756 -111718503 + AT_rich Low_complexity Low_complexity 1 23 0 4 896 4484 159 10 5 chr5 40818757 40819567 -111717692 + MusHAL1 LINE L1 1124 1937 -775 4 896 262 185 18 18 chr5 40819567 40819622 -111717637 + MTD LTR MaLR 365 419 0 4 896 33 56 0 0 chr5 40819773 40819827 -111717432 + AT_rich Low_complexity Low_complexity 1 54 0 4 896 465 316 75 29 chr5 40820358 40820599 -111716660 - MLT1A0 LTR MaLR 0 365 114 4 896 3050 90 110 14 chr5 40820715 40821213 -111716046 + L1_Mur1 LINE L1 4194 4739 -1147 4 896 422 141 0 21 chr5 40821211 40821301 -111715958 + L1_Mur1 LINE L1 5470 5554 -619 4 896 5478 122 77 12 chr5 40821301 40822224 -111715035 + Lx3A LINE L1 5998 6980 -1 4 896 226 273 0 60 chr5 40822224 40822250 -111715009 + L1_Mur1 LINE L1 5555 5578 -595 4 896 198 0 0 0 chr5 40822252 40822274 -111714985 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 4 896 270 346 37 37 chr5 40823605 40823713 -111713546 + PB1D10 SINE Alu 10 117 0 4 896 269 51 26 0 chr5 40823813 40823852 -111713407 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 896 297 0 0 0 chr5 40823868 40823901 -111713358 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 896 215 331 66 3 chr5 40824746 40824854 -111712405 + MIRm SINE MIR 68 179 -89 4 896 468 333 67 31 chr5 40827905 40828100 -111709159 + B4A SINE B4 18 219 -73 4 896 1785 162 26 9 chr5 40828100 40828443 -111708816 + Lx2A1 LINE L1 6647 6995 -13 4 896 315 0 0 0 chr5 40828443 40828478 -111708781 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 896 315 0 0 0 chr5 40828478 40828512 -111708747 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 896 261 0 0 0 chr5 40829216 40829245 -111708014 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 4 896 1138 275 55 65 chr5 40830103 40830504 -111706755 + MTD LTR MaLR 1 397 -22 4 896 25 51 0 0 chr5 40830556 40830595 -111706664 + AT_rich Low_complexity Low_complexity 1 39 0 4 896 4620 157 22 14 chr5 40830777 40831577 -111705682 - Lx4A LINE L1 -16 7042 6236 4 896 21 57 0 0 chr5 40831637 40831672 -111705587 + AT_rich Low_complexity Low_complexity 1 35 0 4 896 847 259 95 17 chr5 40831672 40831967 -111705292 - Lx6 LINE L1 -7 7453 7136 4 896 318 50 0 0 chr5 40831968 40832008 -111705251 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 896 462 79 0 0 chr5 40832008 40832070 -111705189 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 896 261 294 29 0 chr5 40832101 40832203 -111705056 + (TA)n Simple_repeat Simple_repeat 1 105 0 4 896 222 37 0 0 chr5 40833475 40833502 -111703757 + (TCC)n Simple_repeat Simple_repeat 2 28 0 4 896 519 96 0 0 chr5 40833499 40833582 -111703677 + (TC)n Simple_repeat Simple_repeat 1 83 0 4 896 390 304 81 27 chr5 40833647 40833833 -111703426 + MLT1B LTR MaLR 192 387 -3 4 896 726 129 13 70 chr5 40834213 40834371 -111702888 + Lx2B LINE L1 6848 6996 -4 4 896 279 0 0 0 chr5 40834466 40834497 -111702762 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 896 780 91 0 0 chr5 40835374 40835484 -111701775 + (TA)n Simple_repeat Simple_repeat 2 111 0 4 896 222 37 0 0 chr5 40835486 40835513 -111701746 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 896 1068 103 7 0 chr5 40836456 40836602 -111700657 - B1_Mus2 SINE Alu 0 147 1 4 896 294 57 0 54 chr5 40836989 40837045 -111700214 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 4 896 422 276 51 14 chr5 40837246 40837446 -111699813 - Lx8 LINE L1 -766 6707 6471 4 896 870 96 0 0 chr5 40837519 40837644 -111699615 - L1_Mus2 LINE L1 -1 6565 6441 4 896 553 267 0 81 chr5 40837818 40837837 -111699422 - Lx2B LINE L1 -85 5762 5744 4 896 4035 152 27 8 chr5 40837837 40838506 -111698753 - Lx2B LINE L1 0 7000 6319 4 896 1185 104 0 77 chr5 40838506 40838722 -111698537 - Lx2B LINE L1 -1221 5779 5546 4 896 19224 165 33 10 chr5 40838725 40840384 -111696875 - Lx2B LINE L1 -679 6321 4647 4 896 405 0 0 0 chr5 40840384 40840429 -111696830 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 4 896 19224 188 45 17 chr5 40840429 40842976 -111694283 - Lx2B LINE L1 -1240 4646 2013 4 896 351 0 0 0 chr5 40842976 40843015 -111694244 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 896 19224 188 45 17 chr5 40843015 40843514 -111693745 - Lx2B LINE L1 -3874 2012 1518 4 896 681 13 0 0 chr5 40843514 40843592 -111693667 + (TCTCC)n Simple_repeat Simple_repeat 3 80 0 4 896 19224 188 44 20 chr5 40843592 40843883 -111693376 - Lx2B LINE L1 -4369 1517 1197 4 896 2655 102 5 22 chr5 40843883 40844286 -111692973 - MTA_Mm LTR MaLR 0 396 1 4 896 1157 198 25 43 chr5 40844286 40844599 -111692660 - Lx2B LINE L1 -5420 1196 820 4 896 490 292 184 38 chr5 40844669 40845060 -111692199 - L1MEg LINE L1 -4214 1870 1423 4 896 213 329 0 60 chr5 40846362 40846446 -111690813 + ID4_ SINE ID 5 83 0 4 896 207 69 0 0 chr5 40847852 40847881 -111689378 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 896 1154 188 50 120 chr5 40848010 40848451 -111688808 + RMER17C LTR ERVK 1 410 0 4 896 785 139 192 47 chr5 40848766 40848880 -111688379 - L1_Mus4 LINE L1 0 6636 6520 4 896 195 42 0 0 chr5 40848880 40848904 -111688355 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 4 896 785 139 192 47 chr5 40848904 40849023 -111688236 - L1_Mus4 LINE L1 -117 6519 6370 4 896 229 179 18 0 chr5 40849921 40849977 -111687282 + Lx2A LINE L1 6946 7002 -6 4 896 526 200 14 35 chr5 40850655 40850800 -111686459 - Lx7 LINE L1 0 7696 7555 4 896 448 176 23 23 chr5 40850814 40850988 -111686271 + (TA)n Simple_repeat Simple_repeat 1 174 0 5 896 294 29 0 0 chr5 40850983 40851018 -111686241 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 896 227 259 35 0 chr5 40851101 40851159 -111686100 - Lx6 LINE L1 -295 7165 7106 5 896 2629 245 23 26 chr5 40851161 40851890 -111685369 - Lx7 LINE L1 -705 6991 6265 4 896 5151 200 85 26 chr5 40851901 40852786 -111684473 - L1_Mur3 LINE L1 -2931 2949 2058 5 896 405 58 0 0 chr5 40852786 40852838 -111684421 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 896 5151 200 85 26 chr5 40852838 40853514 -111683745 - L1_Mur3 LINE L1 -3823 2057 1294 5 896 279 0 0 0 chr5 40853514 40853545 -111683714 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 896 5151 200 85 26 chr5 40853545 40853577 -111683682 - L1_Mur3 LINE L1 -4587 1293 1262 5 896 1066 105 12 6 chr5 40853579 40853751 -111683508 + (TTTTC)n Simple_repeat Simple_repeat 5 177 0 5 896 432 55 0 0 chr5 40853751 40853806 -111683453 + (TCTCC)n Simple_repeat Simple_repeat 3 57 0 5 896 428 129 59 0 chr5 40853808 40853909 -111683350 - L1_Mur3 LINE L1 -6478 1250 1144 5 896 4470 222 44 19 chr5 40853919 40855024 -111682235 + Lx5 LINE L1 5642 6774 -276 5 896 3862 191 68 56 chr5 40855024 40855120 -111682139 + RLTR25A LTR ERVK 1 98 -1005 5 896 468 48 0 0 chr5 40855120 40855183 -111682076 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 896 3862 191 68 56 chr5 40855183 40855614 -111681645 + RLTR25A LTR ERVK 99 520 -583 5 896 306 0 0 0 chr5 40855614 40855648 -111681611 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 896 3862 204 73 67 chr5 40855648 40856163 -111681096 + RLTR25A LTR ERVK 521 1026 -2 5 896 786 246 99 4 chr5 40856163 40856416 -111680843 + Lx5 LINE L1 6769 7045 -5 5 896 270 0 0 0 chr5 40856443 40856473 -111680786 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 896 674 135 8 0 chr5 40856473 40856599 -111680660 - L1_Mur3 LINE L1 -6596 1132 1006 5 896 243 247 0 0 chr5 40856606 40856679 -111680580 + T-rich Low_complexity Low_complexity 1 73 0 5 896 3643 137 88 11 chr5 40856679 40856821 -111680438 - Lx3B LINE L1 0 6973 6835 5 896 288 0 0 0 chr5 40856821 40856853 -111680406 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 896 3643 137 88 11 chr5 40856853 40857354 -111679905 - Lx3B LINE L1 -139 6834 6280 5 896 4505 120 24 2 chr5 40857354 40858362 -111678897 - Lx3B LINE L1 -817 6159 5134 5 896 1791 272 49 29 chr5 40858386 40859078 -111678181 - L1_Mur3 LINE L1 -6824 904 199 5 896 292 287 21 43 chr5 40859942 40860075 -111677184 + MIR SINE MIR 63 188 -20 5 896 197 274 11 0 chr5 40860238 40860333 -111676926 + GA-rich Low_complexity Low_complexity 3 98 0 5 896 297 75 0 0 chr5 40860960 40861000 -111676259 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 5 896 1044 88 12 6 chr5 40861074 40861235 -111676024 - L1_Mus3 LINE L1 -6 6632 6471 5 896 1708 227 91 50 chr5 40861236 40861981 -111675278 + RMER19B LTR ERVK 1 836 -66 5 896 198 0 0 0 chr5 40862278 40862300 -111674959 + (T)n Simple_repeat Simple_repeat 1 22 0 5 896 1166 68 0 13 chr5 40862300 40862450 -111674809 - B1_Mus1 SINE Alu 0 148 1 5 896 2223 136 83 50 chr5 40862511 40862969 -111674290 - IAPLTR2_Mm LTR ERVK -2 473 1 5 896 54366 15 7 10 chr5 40862969 40869467 -111667792 - IAPEz-int LTR ERVK 0 6481 3 5 896 2212 138 83 50 chr5 40869467 40869925 -111667334 - IAPLTR2_Mm LTR ERVK -2 473 1 5 896 485 165 0 23 chr5 40870081 40870168 -111667091 + RMER19B LTR ERVK 818 902 0 5 896 705 317 28 7 chr5 40871085 40871374 -111665885 - Lx7 LINE L1 -1799 5897 5603 5 896 421 180 72 0 chr5 40871394 40871505 -111665754 - Lx9 LINE L1 -4 7640 7522 5 896 1108 227 56 0 chr5 40871522 40871791 -111665468 - Lx9 LINE L1 -174 7470 7187 5 896 10390 55 1 0 chr5 40871792 40873864 -111663395 - L1Md_F2 LINE L1 -12 6570 4496 5 896 485 258 16 0 chr5 40873864 40873992 -111663267 - Lx9 LINE L1 -442 7202 7073 5 896 1031 236 29 0 chr5 40873994 40874240 -111663019 + L1_Rod LINE L1 2220 2472 -3375 5 896 481 30 30 0 chr5 40874240 40874307 -111662952 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 896 370 407 59 10 chr5 40875238 40875509 -111661750 - MLT1G LTR MaLR -120 475 190 5 896 228 35 0 0 chr5 40875703 40875732 -111661527 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 896 553 326 64 78 chr5 40876169 40876452 -111660807 + MTEa LTR MaLR 91 369 -10 5 896 247 416 60 25 chr5 40876858 40876964 -111660295 - MLT1G-int LTR MaLR -515 894 791 5 896 864 129 5 76 chr5 40876964 40877148 -111660111 + L1Md_F2 LINE L1 6412 6582 0 5 896 247 400 83 20 chr5 40877148 40877439 -111659820 - MLT1G-int LTR MaLR -623 866 567 5 896 216 0 0 0 chr5 40877498 40877522 -111659737 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 896 4634 49 9 2 chr5 40877710 40878285 -111658974 + L1Md_F2 LINE L1 6004 6582 0 5 896 406 286 148 13 chr5 40878306 40878455 -111658804 - ID_B1 SINE B4 -55 169 1 5 896 732 218 0 27 chr5 40878578 40878724 -111658535 - B1_Mus2 SINE Alu 0 147 6 5 896 322 314 90 33 chr5 40878626 40878748 -111658511 - B4 SINE B4 -98 194 66 5 896 21 0 0 0 chr5 40879589 40879610 -111657649 + AT_rich Low_complexity Low_complexity 1 21 0 5 896 267 331 43 36 chr5 40880059 40880197 -111657062 + MLT1B LTR MaLR 12 150 -240 5 896 409 257 19 0 chr5 40881532 40881637 -111655622 + MLT2B3 LTR ERVL 1 107 -447 5 896 387 0 0 0 chr5 40881929 40881972 -111655287 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 896 311 278 125 82 chr5 40882149 40882333 -111654926 + MLT2B3 LTR ERVL 21 212 -342 5 896 27 62 0 0 chr5 40882636 40882684 -111654575 + AT_rich Low_complexity Low_complexity 1 48 0 5 896 230 227 72 9 chr5 40882912 40883023 -111654236 + (TCTA)n Simple_repeat Simple_repeat 2 119 0 5 896 923 284 114 0 chr5 40883450 40883784 -111653475 + Lx6 LINE L1 7087 7458 -2 5 896 441 344 6 38 chr5 40883785 40883945 -111653314 + B3A SINE B2 28 182 -16 5 896 21 0 0 0 chr5 40883970 40883991 -111653268 + AT_rich Low_complexity Low_complexity 1 21 0 5 896 473 293 74 60 chr5 40884909 40885623 -111651636 + L1MA9 LINE L1 5012 5745 -567 5 896 1916 94 41 22 chr5 40885623 40885939 -111651320 - RLTRETN_Mm LTR ERVK 0 322 1 5 896 473 280 106 90 chr5 40885939 40886049 -111651210 + L1MA9 LINE L1 5746 5851 -461 5 896 1270 251 206 13 chr5 40886237 40886829 -111650430 - Lx5 LINE L1 -603 6447 5745 5 896 2248 114 9 0 chr5 40886829 40887153 -111650106 - ORR1A2 LTR MaLR 0 327 1 5 896 1093 202 12 28 chr5 40887153 40887305 -111649954 - Lx5 LINE L1 -1306 5744 5591 5 896 1658 309 42 4 chr5 40887317 40887866 -111649393 + Lx5 LINE L1 6450 7019 -31 5 896 555 16 0 0 chr5 40888142 40888206 -111649053 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 896 21 36 0 0 chr5 40888746 40888774 -111648485 + AT_rich Low_complexity Low_complexity 1 28 0 5 896 199 300 47 62 chr5 40889255 40889319 -111647940 + L2b LINE L2 3297 3359 -16 5 896 483 206 13 27 chr5 40889462 40889612 -111647647 + (TATATG)n Simple_repeat Simple_repeat 1 148 0 5 896 280 133 0 32 chr5 40889634 40889696 -111647563 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 896 228 67 0 0 chr5 40889696 40889726 -111647533 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 896 217 216 15 46 chr5 40889750 40889881 -111647378 + (TATATG)n Simple_repeat Simple_repeat 1 127 0 5 896 2342 214 41 72 chr5 40890108 40890655 -111646604 + RMER15 LTR ERVL 14 532 -43 5 896 288 0 0 0 chr5 40890655 40890687 -111646572 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 896 2342 214 41 72 chr5 40890687 40890719 -111646540 + RMER15 LTR ERVL 533 574 -1 5 896 594 99 0 0 chr5 40891443 40891534 -111645725 + (TG)n Simple_repeat Simple_repeat 2 92 0 5 896 370 330 0 0 chr5 40891773 40891882 -111645377 + GA-rich Low_complexity Low_complexity 4 112 0 5 896 298 295 92 66 chr5 40892048 40892244 -111645015 - MIRb SINE MIR -33 235 35 5 896 189 0 0 0 chr5 40892933 40892954 -111644305 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 5 896 809 97 22 17 chr5 40892988 40893166 -111644093 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 5 896 755 285 35 15 chr5 40893430 40893633 -111643626 + B3 SINE B2 2 208 -8 5 897 21 0 0 0 chr5 40895229 40895250 -111642009 + AT_rich Low_complexity Low_complexity 1 21 0 5 897 25450 105 77 15 chr5 40895324 40901074 -111636185 - L1Md_F2 LINE L1 -1 6581 443 5 897 4386 159 0 3 chr5 40902195 40902956 -111634303 - L1_Mur2 LINE L1 -1482 4395 3637 5 897 666 206 0 0 chr5 40902954 40903080 -111634179 + Lx LINE L1 6201 6326 -328 5 897 596 81 11 0 chr5 40903080 40903167 -111634092 + (GAAAA)n Simple_repeat Simple_repeat 2 89 0 5 897 252 290 13 46 chr5 40903335 40903487 -111633772 + GA-rich Low_complexity Low_complexity 3 149 0 5 897 5049 222 45 3 chr5 40903805 40904992 -111632267 - ORR1C1-int LTR MaLR -272 1237 1 5 897 1108 213 212 7 chr5 40905017 40905319 -111631940 - ORR1C1 LTR MaLR -14 364 1 5 897 638 316 51 57 chr5 40905343 40905695 -111631564 + RMER5 LTR ERV1 156 505 -29 5 897 509 292 99 0 chr5 40905760 40905921 -111631338 - MT2A LTR ERVL -58 475 299 5 897 4870 132 42 12 chr5 40905983 40906789 -111630470 + Lx2 LINE L1 6168 6997 0 5 897 25 31 0 0 chr5 40907072 40907104 -111630155 + AT_rich Low_complexity Low_complexity 1 32 0 5 897 248 250 97 54 chr5 40907167 40907260 -111629999 - MLT1J LTR MaLR -8 504 408 5 897 192 356 0 0 chr5 40907391 40907450 -111629809 - L3 LINE CR1 -130 4359 4301 5 897 21 0 0 0 chr5 40908374 40908395 -111628864 + AT_rich Low_complexity Low_complexity 1 21 0 5 897 203 133 0 0 chr5 40908977 40909007 -111628252 + (GAGAA)n Simple_repeat Simple_repeat 2 31 0 5 897 2474 89 3 0 chr5 40909545 40909883 -111627376 - MTB LTR MaLR 0 400 62 5 897 7743 71 3 5 chr5 40909943 40910977 -111626282 + L1_Mus1 LINE L1 5532 6564 -3 5 897 210 71 0 0 chr5 40910977 40911005 -111626254 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 897 663 298 21 68 chr5 40911097 40911288 -111625971 + B3 SINE B2 21 202 -14 5 897 4408 241 59 21 chr5 40911652 40912254 -111625005 - Lx5 LINE L1 0 7050 6422 5 897 261 0 0 0 chr5 40912254 40912283 -111624976 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 897 4408 241 59 21 chr5 40912283 40912554 -111624705 - Lx5 LINE L1 -629 6421 6147 5 897 219 36 0 0 chr5 40912554 40912582 -111624677 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 897 4408 241 59 21 chr5 40912582 40912801 -111624458 - Lx5 LINE L1 -904 6146 5916 5 897 3797 187 135 2 chr5 40912798 40913238 -111624021 + Lx5 LINE L1 4896 5389 -488 5 897 330 26 0 0 chr5 40913238 40913277 -111623982 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 897 3797 162 60 5 chr5 40913277 40913737 -111623522 + Lx5 LINE L1 5390 5918 -1132 5 897 1357 82 6 0 chr5 40914567 40914750 -111622509 - B2_Mm1a SINE B2 -8 185 2 5 897 383 286 96 41 chr5 40914939 40915136 -111622123 - MT2B2 LTR ERVL 0 584 377 5 897 992 82 0 0 chr5 40915401 40915536 -111621723 - L1_Mus2 LINE L1 0 6566 6432 5 897 349 336 9 0 chr5 40915910 40916023 -111621236 - MER103 DNA DNA -50 116 3 5 897 2342 84 0 67 chr5 40916259 40916631 -111620628 - L1Md_F2 LINE L1 -1 6581 6235 5 897 813 119 8 0 chr5 40916631 40916749 -111620510 + L1Md_F2 LINE L1 6024 6142 -440 5 897 595 305 5 20 chr5 40917805 40918006 -111619253 + B3A SINE B2 1 198 0 5 897 25 31 0 0 chr5 40918006 40918038 -111619221 + AT_rich Low_complexity Low_complexity 1 32 0 5 897 564 15 0 0 chr5 40918193 40918258 -111619001 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 897 253 279 12 25 chr5 40918360 40918441 -111618818 - B4 SINE B4 -209 83 4 5 897 14766 135 106 6 chr5 40918570 40922796 -111614463 - L1Md_F2 LINE L1 -193 6389 1272 6 897 252 59 0 0 chr5 40922796 40922830 -111614429 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 6 897 14766 181 36 46 chr5 40922830 40923699 -111613560 - L1Md_F2 LINE L1 -5453 1271 415 6 897 280 360 131 27 chr5 40924028 40924211 -111613048 + MLT1G1 LTR MaLR 347 548 -31 6 897 293 261 42 25 chr5 40925293 40925411 -111611848 + L1MA9 LINE L1 5817 5936 -376 6 897 8114 43 2 5 chr5 40928944 40929942 -111607317 - L1Md_F2 LINE L1 -1 6581 5587 6 897 694 242 0 88 chr5 40930611 40930815 -111606444 - RMER20B LTR ERVK -14 613 428 6 897 243 0 0 0 chr5 40931533 40931560 -111605699 + (T)n Simple_repeat Simple_repeat 1 27 0 6 897 188 79 0 50 chr5 40931615 40931655 -111605604 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 6 897 1328 256 31 39 chr5 40931655 40932069 -111605190 - MERVK26-int LTR ERVK -6443 476 66 6 897 242 234 12 61 chr5 40932186 40932268 -111604991 - RMER20B LTR ERVK 0 627 550 6 897 452 345 87 15 chr5 40932605 40932997 -111604262 - L1MB7 LINE L1 -315 6367 5948 6 897 324 102 0 0 chr5 40933402 40933451 -111603808 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 6 897 3153 162 34 34 chr5 40933497 40934109 -111603150 - Lx2B LINE L1 -17 6983 6372 6 897 6608 182 31 11 chr5 40934109 40935329 -111601930 - L1_Mur2 LINE L1 -8 5869 4623 6 897 207 0 0 0 chr5 40935329 40935352 -111601907 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 897 6608 182 31 11 chr5 40935352 40935460 -111601799 - L1_Mur2 LINE L1 -1255 4622 4515 6 897 37735 32 1 0 chr5 40935507 40941503 -111595756 - L1Md_T LINE L1 0 6585 489 6 897 2117 168 10 8 chr5 40941509 40941905 -111595354 + L1_Mur2 LINE L1 4076 4472 -1405 6 897 359 312 32 28 chr5 40941956 40942203 -111595056 - L1MB7 LINE L1 -1266 5378 5131 6 897 323 291 98 5 chr5 40942253 40942457 -111594802 - L1MB7 LINE L1 -1719 4925 4703 6 897 299 306 79 41 chr5 40942905 40943171 -111594088 - L1MB7 LINE L1 -3229 3415 3140 6 897 441 353 129 82 chr5 40943270 40944212 -111593047 - L1MB7 LINE L1 -5546 996 10 6 897 4109 244 58 19 chr5 40944612 40945691 -111591568 + Lx9 LINE L1 6364 7484 -160 6 897 750 75 0 0 chr5 40945723 40945829 -111591430 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 6 897 207 204 0 0 chr5 40945829 40945883 -111591376 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 897 404 19 19 0 chr5 40946021 40946074 -111591185 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 6 897 12864 192 52 26 chr5 40946074 40950125 -111587134 - Lx5 LINE L1 -9 7041 2846 6 897 461 17 0 17 chr5 40950732 40950791 -111586468 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 897 259 303 30 0 chr5 40951205 40951271 -111585988 + ID4_ SINE ID 15 82 -1 6 897 854 329 89 12 chr5 40951298 40951636 -111585623 - MTD LTR MaLR -14 405 42 6 897 2180 15 114 0 chr5 40952142 40952404 -111584855 + RLTR10B LTR ERVK 1 292 0 6 897 1965 56 12 0 chr5 40952404 40952653 -111584606 + MMERVK10C-int LTR ERVK 1 252 -7329 6 897 269 245 0 0 chr5 40952653 40952706 -111584553 + RLTR27 LTR ERVK 223 275 -34 6 897 349 21 106 0 chr5 40952706 40952753 -111584506 + MMERVK10C-int LTR ERVK 225 276 -7305 6 897 695 65 213 0 chr5 40952739 40952847 -111584412 + MMERVK10C-int LTR ERVK 5436 5566 -2015 6 897 894 107 0 6 chr5 40952847 40953048 -111584211 + MMERVK10C-int LTR ERVK 7442 7581 0 6 897 2165 19 114 0 chr5 40953048 40953310 -111583949 + RLTR10B LTR ERVK 1 292 0 6 897 384 154 25 33 chr5 40953311 40953432 -111583827 + CT-rich Low_complexity Low_complexity 3 122 0 6 897 2259 243 76 9 chr5 40953524 40953950 -111583309 + RMER20B LTR ERVK 7 471 -156 6 897 195 42 0 0 chr5 40953950 40953974 -111583285 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 897 2259 243 76 9 chr5 40953974 40954129 -111583130 + RMER20B LTR ERVK 472 626 -1 6 897 348 338 114 54 chr5 40954484 40955035 -111582224 + Charlie8 DNA MER1_type 271 854 -1574 6 897 573 361 19 14 chr5 40955820 40956031 -111581228 - ID_B1 SINE B4 -8 216 5 6 897 215 188 62 0 chr5 40956154 40956218 -111581041 + (TTAAA)n Simple_repeat Simple_repeat 2 69 0 6 897 450 228 67 11 chr5 40956372 40956495 -111580764 + B1_Mur1 SINE Alu 6 149 0 6 897 25 51 0 0 chr5 40956514 40956553 -111580706 + AT_rich Low_complexity Low_complexity 1 39 0 6 897 643 315 57 54 chr5 40956889 40957238 -111580021 - MLT1A0 LTR MaLR -3 362 13 6 897 211 260 0 25 chr5 40959065 40959144 -111578115 + T-rich Low_complexity Low_complexity 3 79 0 6 897 671 115 10 0 chr5 40959182 40959286 -111577973 + URR1A DNA MER1_type 74 178 -48 6 897 595 301 28 0 chr5 40959296 40959472 -111577787 - B3A SINE B2 -13 185 5 6 897 245 288 60 60 chr5 40959472 40959488 -111577771 - CYRA11_Mm Unknown Y-chromosome -411 206 193 6 897 795 75 0 0 chr5 40959758 40959878 -111577381 + (TG)n Simple_repeat Simple_repeat 2 121 0 6 897 355 333 36 9 chr5 40959961 40960073 -111577186 - B4A SINE B4 -88 204 90 6 897 1208 263 27 94 chr5 40961858 40962261 -111574998 + MTE2b LTR MaLR 1 376 -3 6 897 276 53 0 0 chr5 40962391 40962429 -111574830 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 6 897 1055 96 7 0 chr5 40962438 40962584 -111574675 - B1_Mus2 SINE Alu 0 147 1 6 897 432 0 0 0 chr5 40962739 40962787 -111574472 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 897 582 249 64 108 chr5 40964678 40964881 -111572378 - B3A SINE B2 -3 195 2 6 897 24 32 0 0 chr5 40965644 40965675 -111571584 + AT_rich Low_complexity Low_complexity 1 31 0 6 897 192 40 0 0 chr5 40965675 40965700 -111571559 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 897 198 0 0 0 chr5 40965766 40965788 -111571471 + (A)n Simple_repeat Simple_repeat 1 22 0 6 897 31400 97 16 8 chr5 40966729 40972051 -111565208 + L1Md_F2 LINE L1 217 5586 -297 6 897 6539 114 7 3 chr5 40972052 40973031 -111564228 + L1Md_F2 LINE L1 5588 6570 -12 6 897 3419 30 0 8 chr5 40973250 40973649 -111563610 - MTA_Mm LTR MaLR 0 396 1 6 897 8816 37 10 3 chr5 40973649 40974739 -111562520 - MTA_Mm-int LTR MaLR 0 1098 1 6 897 3393 33 0 8 chr5 40974739 40975138 -111562121 - MTA_Mm LTR MaLR 0 396 1 6 897 321 26 0 0 chr5 40975447 40975485 -111561774 + (TCTA)n Simple_repeat Simple_repeat 2 39 0 6 897 22 0 0 0 chr5 40975506 40975528 -111561731 + AT_rich Low_complexity Low_complexity 1 22 0 6 897 742 332 63 14 chr5 40975817 40976101 -111561158 + MLT1D LTR MaLR 188 485 -20 6 897 2019 204 45 2 chr5 40976174 40976596 -111560663 + Lx9 LINE L1 6845 7284 -360 6 897 188 328 53 60 chr5 40976925 40977058 -111560201 + MIRb SINE MIR 109 240 -28 6 897 510 17 0 0 chr5 40977838 40977897 -111559362 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 897 333 0 0 0 chr5 40978638 40978675 -111558584 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 897 1094 83 7 0 chr5 40978761 40978906 -111558353 + B1_Mm SINE Alu 2 147 0 6 897 214 167 0 0 chr5 40978907 40978943 -111558316 + A-rich Low_complexity Low_complexity 3 38 0 6 897 575 264 40 46 chr5 40979807 40979958 -111557301 + B3A SINE B2 4 153 -45 6 897 246 32 0 0 chr5 40980830 40980861 -111556398 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 897 969 113 0 90 chr5 40981423 40981589 -111555670 + B2_Mm2 SINE B2 2 152 -43 6 897 195 114 0 0 chr5 40981589 40981624 -111555635 + (T)n Simple_repeat Simple_repeat 1 35 0 6 897 679 296 30 10 chr5 40982475 40982673 -111554586 + B4 SINE B4 10 211 -81 6 897 5253 41 6 0 chr5 40982962 40983598 -111553661 - L1Md_T LINE L1 0 6582 5943 6 897 2431 14 0 0 chr5 40983598 40983875 -111553384 + L1Md_T LINE L1 5650 5926 -656 6 897 4690 171 33 19 chr5 40985166 40986074 -111551185 + Lx2B LINE L1 6075 6995 -5 6 897 336 237 11 0 chr5 40986530 40986623 -111550636 - Lx4A LINE L1 -3 7055 6962 6 897 540 314 7 7 chr5 40986857 40986995 -111550264 - RSINE1 SINE B4 -22 143 6 6 897 516 32 0 0 chr5 40987084 40987146 -111550113 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 897 2483 106 6 0 chr5 40987769 40988129 -111549130 + L1_Mus3 LINE L1 6274 6635 -3 6 897 1547 287 27 46 chr5 40988158 40988637 -111548622 + RMER19C LTR ERVK 142 611 0 6 897 11361 91 20 19 chr5 40989751 40991452 -111545807 - Lx3_Mus LINE L1 -150 5736 4035 6 897 9226 83 18 1 chr5 40991449 40992729 -111544530 + Lx3_Mus LINE L1 5700 7001 -8 6 897 3253 40 22 0 chr5 40993842 40994244 -111543015 - IAPLTR2a LTR ERVK 0 411 1 6 897 6424 50 12 18 chr5 40994246 40995078 -111542181 - IAPEz-int LTR ERVK -2 6479 5653 6 897 2725 56 0 3 chr5 40995073 40995416 -111541843 - IAPEz-int LTR ERVK -4781 1700 1359 6 897 3916 51 2 18 chr5 40995416 40995919 -111541340 - IAPEz-int LTR ERVK -5819 662 168 6 897 244 302 0 0 chr5 40995919 40995972 -111541287 - RLTR27 LTR ERVK -34 275 223 6 897 227 267 0 0 chr5 40996000 40996045 -111541214 - RLTR27 LTR ERVK -34 275 231 6 897 461 110 108 110 chr5 40996045 40996165 -111541094 - IAPEz-int LTR ERVK -6358 123 11 6 897 402 55 0 0 chr5 40996163 40996218 -111541041 - IAPEz-int LTR ERVK -1930 57 3 6 897 3277 37 22 0 chr5 40996220 40996622 -111540637 - IAPLTR2a LTR ERVK 0 411 1 6 897 297 0 0 0 chr5 40996664 40996697 -111540562 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 897 664 251 71 5 chr5 40998936 40999120 -111538139 + B3 SINE B2 17 212 -4 6 897 669 314 81 65 chr5 40999281 40999554 -111537705 - ORR1D2 LTR MaLR -51 319 32 6 897 1676 89 0 16 chr5 40999554 40999805 -111537454 + L1Md_F2 LINE L1 6323 6569 -13 6 897 669 314 81 65 chr5 40999805 40999841 -111537418 - ORR1D2 LTR MaLR -339 31 5 6 897 288 338 7 13 chr5 40999850 41000000 -111537259 + L1M5 LINE L1 5588 5736 -428 6 897 324 271 42 0 chr5 41000009 41000127 -111537132 + L1ME2z LINE L1 5746 5868 -576 1 897 405 374 82 38 chr5 41000210 41000502 -111536757 + LTR16B LTR ERVL 68 372 -91 2 897 383 255 184 14 chr5 41000620 41000913 -111536346 + L1MA7 LINE L1 5595 5938 -353 3 897 253 314 101 3 chr5 41001051 41001207 -111536052 + L1MA6 LINE L1 4711 4888 -1255 4 897 447 19 0 0 chr5 41001281 41001333 -111535926 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 897 279 0 0 0 chr5 41001333 41001363 -111535896 + (TA)n Simple_repeat Simple_repeat 2 32 0 6 897 271 178 104 82 chr5 41001631 41001717 -111535542 + L1MA6 LINE L1 5330 5417 -883 4 897 4554 38 0 6 chr5 41001717 41002267 -111534992 + L1Md_F3 LINE L1 6037 6583 -1 7 897 271 178 104 82 chr5 41002267 41002315 -111534944 + L1MA6 LINE L1 5418 5467 -833 4 897 641 173 124 20 chr5 41002324 41002477 -111534782 + Lx5 LINE L1 5747 5915 -1135 8 897 2573 275 103 24 chr5 41002487 41003274 -111533985 + Lx6 LINE L1 6612 7460 0 9 897 690 288 110 35 chr5 41003309 41003763 -111533496 + L1MA6 LINE L1 5499 5986 -314 4 897 525 32 0 0 chr5 41003833 41003896 -111533363 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 897 483 18 0 0 chr5 41003897 41003953 -111533306 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 1 897 211 162 12 48 chr5 41004336 41004420 -111532839 + GA-rich Low_complexity Low_complexity 4 84 0 1 897 24 0 0 0 chr5 41004534 41004558 -111532701 + AT_rich Low_complexity Low_complexity 1 24 0 1 897 1057 85 11 0 chr5 41004901 41005077 -111532182 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 1 897 846 265 69 16 chr5 41007028 41007352 -111529907 - ORR1D1 LTR MaLR -2 368 1 1 897 22 0 0 0 chr5 41008184 41008206 -111529053 + AT_rich Low_complexity Low_complexity 1 22 0 1 897 228 182 0 0 chr5 41008390 41008434 -111528825 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 897 180 0 0 0 chr5 41008535 41008555 -111528704 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 897 1017 53 0 29 chr5 41008555 41008692 -111528567 - B1_Mus1 SINE Alu -8 140 8 1 897 420 336 93 49 chr5 41008978 41009450 -111527809 + L1ME1 LINE L1 5426 5918 -261 2 897 392 361 0 8 chr5 41009499 41009622 -111527637 + RSINE1 SINE B4 3 124 -41 2 897 291 54 0 0 chr5 41009629 41009666 -111527593 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 897 1163 58 0 0 chr5 41010073 41010212 -111527047 + B1_Mm SINE Alu 1 139 -8 2 897 180 0 0 0 chr5 41010212 41010232 -111527027 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 897 180 0 0 0 chr5 41010477 41010497 -111526762 + (CTATT)n Simple_repeat Simple_repeat 2 21 0 2 897 354 280 120 9 chr5 41010841 41010949 -111526310 + MER63B DNA AcHobo 312 431 -5 2 897 21 0 0 0 chr5 41011427 41011448 -111525811 + AT_rich Low_complexity Low_complexity 1 21 0 2 897 8147 159 8 26 chr5 41011833 41013999 -111523260 - Lx2 LINE L1 0 6997 4882 2 897 2936 94 36 0 chr5 41013999 41014414 -111522845 - L1_Mus1 LINE L1 -1 6566 6137 2 897 7705 177 3 31 chr5 41014414 41014864 -111522395 - Lx2 LINE L1 -1002 4881 4441 2 897 894 309 72 33 chr5 41015591 41015988 -111521271 - Lx6 LINE L1 -95 7365 6611 3 897 781 261 59 5 chr5 41016418 41016622 -111520637 + B3 SINE B2 2 216 0 3 897 208 138 50 33 chr5 41017180 41017240 -111520019 + T-rich Low_complexity Low_complexity 1 61 0 3 897 363 44 0 0 chr5 41017354 41017399 -111519860 + (A)n Simple_repeat Simple_repeat 1 45 0 3 897 240 286 12 0 chr5 41017499 41017581 -111519678 + PB1D10 SINE Alu 16 98 -51 3 897 21 36 0 0 chr5 41017891 41017919 -111519340 + AT_rich Low_complexity Low_complexity 1 28 0 3 897 35 0 0 0 chr5 41018160 41018195 -111519064 + AT_rich Low_complexity Low_complexity 1 35 0 3 897 210 278 140 53 chr5 41019537 41019651 -111517608 + MIR SINE MIR 37 160 -102 3 897 568 332 65 23 chr5 41019651 41019913 -111517346 + B4A SINE B4 2 274 -18 3 897 444 82 0 0 chr5 41020059 41020120 -111517139 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 897 273 237 156 13 chr5 41020191 41020268 -111516991 + B4A SINE B4 6 93 -199 4 897 513 32 0 0 chr5 41020271 41020334 -111516925 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 897 25 65 0 0 chr5 41022132 41022178 -111515081 + AT_rich Low_complexity Low_complexity 1 46 0 4 897 449 286 106 28 chr5 41022407 41022587 -111514672 + Lx8 LINE L1 7270 7463 -10 4 897 714 356 114 16 chr5 41022618 41023135 -111514124 + Lx8 LINE L1 6904 7471 -2 4 897 270 341 0 83 chr5 41023922 41024018 -111513241 - MER2 DNA MER2_type -1 344 257 4 897 46 19 0 0 chr5 41024179 41024232 -111513027 + AT_rich Low_complexity Low_complexity 1 53 0 4 897 204 277 0 0 chr5 41024232 41024279 -111512980 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 112 6033 59 1 1 chr5 41025428 41026189 -111511070 + L1_Mus1 LINE L1 5807 6567 0 4 898 201 94 0 0 chr5 41026822 41026854 -111510405 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 4 898 303 161 123 0 chr5 41027105 41027186 -111510073 + L1MB8 LINE L1 5281 5371 -775 5 898 2937 41 7 2 chr5 41027376 41027810 -111509449 - L1Md_F2 LINE L1 -638 5944 5503 5 898 5686 29 0 1 chr5 41027810 41028471 -111508788 + L1Md_F2 LINE L1 5909 6568 -14 5 898 195 42 0 0 chr5 41028478 41028502 -111508757 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 5 898 225 167 21 0 chr5 41028568 41028616 -111508643 + L1MB8 LINE L1 5731 5779 -399 5 898 245 310 70 0 chr5 41028681 41028810 -111508449 + L1MB8 LINE L1 5803 5940 -238 5 898 237 151 0 0 chr5 41029997 41030050 -111507209 + (TGG)n Simple_repeat Simple_repeat 1 53 0 5 898 270 0 0 0 chr5 41030860 41030890 -111506369 + (T)n Simple_repeat Simple_repeat 1 30 0 5 898 329 326 26 88 chr5 41031192 41031384 -111505875 + MIRb SINE MIR 73 252 -16 5 898 276 354 71 24 chr5 41031808 41031976 -111505283 - MLT1B LTR MaLR -23 367 192 5 898 290 125 0 0 chr5 41031976 41032024 -111505235 - RMER1B Other Other -10 1056 1009 5 898 608 173 0 0 chr5 41032024 41032128 -111505131 - RLTR11A2 LTR ERVK 0 527 424 5 898 2482 243 102 13 chr5 41032128 41032901 -111504358 - RMER1B Other Other -95 971 2 5 898 459 35 0 0 chr5 41032901 41032958 -111504301 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 898 555 16 0 0 chr5 41032958 41033021 -111504238 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 898 673 294 112 5 chr5 41033021 41033075 -111504184 - RMER1A Other Other -787 243 177 5 898 230 351 53 11 chr5 41033150 41033245 -111504014 - MLT1B LTR MaLR -291 99 1 5 898 323 393 80 31 chr5 41033379 41033828 -111503431 + Lx8 LINE L1 6947 7417 -56 6 898 303 276 100 41 chr5 41034123 41034293 -111502966 + MER58B DNA MER1_type 147 326 -15 6 898 828 125 41 12 chr5 41034830 41034995 -111502264 + Lx2A LINE L1 5645 5808 -1250 6 898 375 83 0 0 chr5 41034997 41035057 -111502202 + (A)n Simple_repeat Simple_repeat 1 60 0 6 898 1159 171 0 14 chr5 41035066 41035285 -111501974 + L1_Mus4 LINE L1 4661 4876 -1007 6 898 33577 86 15 11 chr5 41035287 41036121 -111501138 - L1Md_F2 LINE L1 -2 6580 5748 6 898 306 0 0 0 chr5 41036121 41036155 -111501104 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 898 33577 93 10 10 chr5 41036155 41041528 -111495731 - L1Md_F2 LINE L1 -136 5747 371 6 898 2702 118 5 23 chr5 41041557 41041989 -111495270 - L1_Mus3 LINE L1 -7 6631 6208 6 898 1863 122 77 3 chr5 41041989 41042301 -111494958 + L1_Mm LINE L1 5293 5627 -256 7 898 5668 158 1 1 chr5 41042297 41043360 -111493899 + L1_Mus4 LINE L1 4862 5924 -712 6 898 1373 128 0 0 chr5 41043359 41043555 -111493704 - L1_Mus4 LINE L1 -213 6423 6228 7 898 4784 116 3 4 chr5 41043555 41044271 -111492988 + L1_Mus4 LINE L1 5922 6636 0 6 898 7325 151 11 5 chr5 41044283 41045500 -111491759 + Lx2A LINE L1 5783 7006 -2 7 898 234 0 0 0 chr5 41045501 41045527 -111491732 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 7 898 390 339 56 9 chr5 41045806 41046125 -111491134 + L1MC4a LINE L1 7015 7348 -534 7 898 707 262 117 53 chr5 41046355 41046689 -111490570 + ORR1D-int LTR MaLR 6 335 -923 7 898 638 308 177 52 chr5 41046734 41047275 -111489984 + ORR1D-int LTR MaLR 668 1418 -162 7 898 231 220 34 0 chr5 41048237 41048296 -111488963 + GA-rich Low_complexity Low_complexity 2 62 0 7 898 292 343 7 7 chr5 41048632 41048776 -111488483 + GA-rich Low_complexity Low_complexity 2 145 0 7 898 2732 0 0 0 chr5 41049120 41049423 -111487836 - L1Md_A LINE L1 -511 6071 5769 7 898 5037 9 0 0 chr5 41049423 41049988 -111487271 + L1Md_A LINE L1 6018 6582 0 7 898 204 40 0 0 chr5 41050024 41050049 -111487210 + (A)n Simple_repeat Simple_repeat 1 25 0 7 898 520 319 20 27 chr5 41050059 41050207 -111487052 + B4A SINE B4 2 148 -144 8 898 413 321 96 30 chr5 41050200 41050399 -111486860 + B4A SINE B4 63 274 -18 8 898 414 0 0 0 chr5 41050415 41050461 -111486798 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 898 216 0 0 0 chr5 41051134 41051158 -111486101 + (GGGTG)n Simple_repeat Simple_repeat 5 28 0 8 898 450 0 0 0 chr5 41051474 41051524 -111485735 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 898 1792 94 65 11 chr5 41051777 41052056 -111485203 - L1Md_F2 LINE L1 0 6582 6289 8 898 337 269 99 20 chr5 41052479 41052631 -111484628 + MER58A DNA MER1_type 43 206 -18 8 898 22 80 0 0 chr5 41053641 41053691 -111483568 + AT_rich Low_complexity Low_complexity 1 50 0 8 898 1396 91 9 35 chr5 41053817 41054046 -111483213 + L1_Mus3 LINE L1 6413 6635 -3 8 898 36 82 0 0 chr5 41054073 41054158 -111483101 + AT_rich Low_complexity Low_complexity 1 85 0 8 898 355 155 48 0 chr5 41054176 41054279 -111482980 + (TA)n Simple_repeat Simple_repeat 2 109 0 9 898 342 255 82 0 chr5 41054451 41054549 -111482710 + RMER15 LTR ERVL 422 527 -48 9 898 255 360 30 30 chr5 41054527 41054696 -111482563 + RMER15 LTR ERVL 389 557 -18 9 898 499 350 39 17 chr5 41055113 41055343 -111481916 + RMER15-int LTR ERVL 1987 2221 -2778 9 898 1147 61 0 0 chr5 41055429 41055576 -111481683 + B1_Mus2 SINE Alu 1 147 0 9 898 30 0 0 0 chr5 41055576 41055606 -111481653 + AT_rich Low_complexity Low_complexity 1 30 0 9 898 596 301 44 26 chr5 41057041 41057330 -111479929 + ERVL-B4-int LTR ERVL 2063 2361 -3306 9 898 207 114 0 0 chr5 41059247 41059282 -111477977 + (CAA)n Simple_repeat Simple_repeat 2 36 0 9 898 607 278 60 0 chr5 41059337 41059470 -111477789 - B1_Mus2 SINE Alu 0 147 7 9 898 22 0 0 0 chr5 41059979 41060001 -111477258 + AT_rich Low_complexity Low_complexity 1 22 0 9 898 2002 283 41 33 chr5 41060868 41061508 -111475751 - Lx8 LINE L1 -2 7471 6827 9 898 949 343 13 16 chr5 41061562 41061935 -111475324 + Lx8 LINE L1 6326 6697 -776 9 898 21 36 0 0 chr5 41064056 41064084 -111473175 + AT_rich Low_complexity Low_complexity 1 28 0 1 898 30 27 0 0 chr5 41065706 41065743 -111471516 + AT_rich Low_complexity Low_complexity 1 37 0 1 898 321 312 31 16 chr5 41067410 41067537 -111469722 - MIRb SINE MIR -109 159 31 1 898 2592 259 47 42 chr5 41068890 41069354 -111467905 - Lx6 LINE L1 0 7460 6995 1 898 225 0 0 0 chr5 41069354 41069379 -111467880 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 898 1097 65 0 0 chr5 41069379 41069518 -111467741 - B1_Mus1 SINE Alu -8 140 2 1 898 2592 259 47 42 chr5 41069518 41069738 -111467521 - Lx6 LINE L1 -466 6994 6773 1 898 1125 101 0 0 chr5 41069783 41069962 -111467297 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 898 288 130 0 0 chr5 41069968 41070014 -111467245 + (TCC)n Simple_repeat Simple_repeat 3 48 0 1 898 553 202 8 40 chr5 41070021 41070145 -111467114 - Lx6 LINE L1 -708 6752 6633 1 898 1009 97 30 0 chr5 41070145 41070279 -111466980 + B1_Mus1 SINE Alu 2 139 -9 1 898 568 177 228 0 chr5 41070302 41070460 -111466799 - Lx6 LINE L1 -817 6643 6450 1 898 255 240 0 0 chr5 41070493 41070543 -111466716 + MERVK26-int LTR ERVK 6863 6912 -7 1 898 1038 236 123 47 chr5 41070634 41070999 -111466260 + RMER13A LTR ERVK 101 493 -367 1 898 312 233 43 22 chr5 41071263 41071355 -111465904 - Lx6 LINE L1 -1007 6453 6360 1 898 606 264 31 0 chr5 41071392 41071521 -111465738 - Lx6 LINE L1 -1212 6248 6116 1 898 2549 197 27 16 chr5 41071522 41072139 -111465120 - Lx6 LINE L1 -1533 5927 5293 1 898 2706 175 6 22 chr5 41073572 41074062 -111463197 - Lx2 LINE L1 -13 6984 6503 1 898 3419 160 9 2 chr5 41074077 41074648 -111462611 + Lx2 LINE L1 5657 6231 -766 1 898 372 273 81 0 chr5 41074863 41074962 -111462297 + B3 SINE B2 108 214 -2 1 898 1531 101 93 8 chr5 41075942 41076201 -111461058 + L1_Mus3 LINE L1 6358 6638 0 1 898 396 0 0 0 chr5 41076913 41076957 -111460302 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 898 1102 55 0 27 chr5 41076957 41077096 -111460163 - B1_Mm SINE Alu -10 137 1 1 898 533 287 61 33 chr5 41077117 41077157 -111460102 + B3 SINE B2 32 71 -145 1 898 288 0 0 0 chr5 41077157 41077189 -111460070 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 898 533 287 61 33 chr5 41077189 41077328 -111459931 + B3 SINE B2 72 216 0 1 898 2298 69 119 11 chr5 41077544 41077896 -111459363 - RLTR10 LTR ERVK 0 390 1 1 898 290 156 0 15 chr5 41078610 41078675 -111458584 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 898 1302 19 6 58 chr5 41079250 41079421 -111457838 - L1Md_T LINE L1 -300 6282 6121 1 898 1557 41 10 0 chr5 41079421 41079617 -111457642 + L1Md_T LINE L1 6385 6582 0 1 898 369 0 0 0 chr5 41079738 41079779 -111457480 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 898 245 307 14 55 chr5 41080157 41080302 -111456957 - RLTR11B LTR ERVK -58 395 257 1 898 656 272 15 34 chr5 41080380 41080605 -111456654 - RLTR11B LTR ERVK -303 225 3 1 898 207 162 56 42 chr5 41080645 41080716 -111456543 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 1 898 272 320 134 29 chr5 41080820 41081058 -111456201 - MLT2C1 LTR ERVL -95 302 40 1 898 27 29 0 0 chr5 41081079 41081113 -111456146 + AT_rich Low_complexity Low_complexity 1 34 0 1 898 330 159 0 0 chr5 41081377 41081465 -111455794 + A-rich Low_complexity Low_complexity 91 178 0 1 898 249 333 22 0 chr5 41081620 41081710 -111455549 + MLT1I LTR MaLR 317 408 -3 1 898 418 56 0 0 chr5 41083406 41083460 -111453799 + L1_Mus1 LINE L1 6103 6156 -410 1 898 2218 105 223 30 chr5 41083460 41083922 -111453337 - RLTR6_Mm LTR ERV1 -67 587 37 1 898 3256 54 10 0 chr5 41084031 41084439 -111452820 + L1_Mus1 LINE L1 6156 6567 0 1 898 373 333 62 29 chr5 41084572 41084782 -111452477 + B4A SINE B4 55 271 -21 1 898 339 44 0 0 chr5 41084865 41084910 -111452349 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 898 21 0 0 0 chr5 41085464 41085485 -111451774 + AT_rich Low_complexity Low_complexity 1 21 0 1 898 676 294 5 23 chr5 41085496 41085715 -111451544 - B3 SINE B2 0 216 2 1 898 6423 39 0 0 chr5 41087578 41088348 -111448911 - L1Md_T LINE L1 0 6582 5813 1 898 589 80 0 0 chr5 41088384 41088472 -111448787 - Lx LINE L1 0 6654 6567 1 898 225 0 0 0 chr5 41089556 41089581 -111447678 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 898 270 56 0 0 chr5 41089581 41089616 -111447643 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 898 270 152 0 0 chr5 41089866 41089925 -111447334 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1 898 181 380 28 9 chr5 41090102 41090211 -111447048 + MIRc SINE MIR 51 161 -107 1 898 438 352 0 0 chr5 41090737 41090845 -111446414 + PB1 SINE Alu 1 108 -19 1 898 226 393 8 83 chr5 41090845 41090869 -111446390 + ID_B1 SINE B4 82 203 -21 1 898 663 252 31 53 chr5 41091002 41091228 -111446031 - URR1B DNA MER1_type 0 225 5 1 898 267 342 0 105 chr5 41091263 41091387 -111445872 - URR1B DNA MER1_type -114 111 1 1 898 288 0 0 0 chr5 41091766 41091798 -111445461 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 898 686 232 414 31 chr5 41093460 41093716 -111443543 - ORR1D2 LTR MaLR -5 354 1 1 898 216 333 35 90 chr5 41093881 41094082 -111443177 - L2a LINE L2 -22 3404 3215 1 898 630 302 40 7 chr5 41094083 41094336 -111442923 + B4 SINE B4 1 262 -30 1 898 356 323 78 5 chr5 41094346 41094539 -111442720 + B4A SINE B4 63 269 -23 1 898 240 35 0 0 chr5 41094554 41094583 -111442676 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 898 21 0 0 0 chr5 41095183 41095204 -111442055 + AT_rich Low_complexity Low_complexity 1 21 0 1 898 3307 50 0 0 chr5 41095221 41095623 -111441636 - L1_Mus2 LINE L1 0 6566 6165 1 898 26 30 0 0 chr5 41095718 41095751 -111441508 + AT_rich Low_complexity Low_complexity 1 33 0 1 898 447 19 0 0 chr5 41095999 41096051 -111441208 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 898 207 298 0 21 chr5 41096052 41096148 -111441111 + GA-rich Low_complexity Low_complexity 2 95 0 1 898 227 254 0 0 chr5 41096084 41096143 -111441116 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 1 898 242 348 0 87 chr5 41096344 41096470 -111440789 - B4A SINE B4 -177 115 1 1 898 1649 223 69 3 chr5 41096556 41096947 -111440312 + MTC LTR MaLR 5 421 0 1 898 232 357 167 0 chr5 41097237 41097363 -111439896 - B1F SINE Alu -2 147 1 1 898 3014 91 2 0 chr5 41098321 41098741 -111438518 + BGLII LTR ERVK 1 421 0 1 898 855 289 19 34 chr5 41098861 41099042 -111438217 - Lx8 LINE L1 -127 7346 7166 1 898 717 76 0 0 chr5 41099042 41099147 -111438112 + (TC)n Simple_repeat Simple_repeat 2 106 0 1 898 855 289 19 34 chr5 41099147 41099180 -111438079 - Lx8 LINE L1 -308 7165 7130 1 898 1474 262 8 39 chr5 41099180 41099562 -111437697 - ORR1D2 LTR MaLR 0 370 1 1 898 855 289 19 34 chr5 41099562 41099608 -111437651 - Lx8 LINE L1 -344 7129 7089 1 898 348 322 9 39 chr5 41101299 41101521 -111435738 + CT-rich Low_complexity Low_complexity 1 215 0 1 898 730 300 20 32 chr5 41102916 41103167 -111434092 + B4A SINE B4 1 248 -44 1 898 521 139 9 0 chr5 41103265 41103373 -111433886 + (CA)n Simple_repeat Simple_repeat 2 110 0 1 898 29 28 0 0 chr5 41105069 41105105 -111432154 + AT_rich Low_complexity Low_complexity 1 36 0 1 898 1138 62 0 0 chr5 41105316 41105462 -111431797 + B1_Mm SINE Alu 2 147 0 1 898 495 0 0 0 chr5 41105568 41105623 -111431636 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 898 399 56 0 0 chr5 41106040 41106094 -111431165 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 898 667 288 0 35 chr5 41106656 41106825 -111430434 + RSINE1 SINE B4 3 165 0 1 898 318 271 0 0 chr5 41106827 41106923 -111430336 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 898 386 356 38 0 chr5 41107630 41107869 -111429390 - L1_Mur3 LINE L1 -3206 2674 2427 1 898 763 284 30 46 chr5 41108040 41108458 -111428801 - L1_Mur3 LINE L1 -3388 2495 2072 1 898 1151 254 74 25 chr5 41108459 41108891 -111428368 + Lx8 LINE L1 7019 7471 -2 1 898 354 316 90 40 chr5 41109911 41110112 -111427147 - MLT1A0 LTR MaLR -154 211 1 1 898 389 352 81 53 chr5 41110224 41110509 -111426750 - MLT-int LTR MaLR -124 1611 1319 1 898 1263 184 127 0 chr5 41110540 41110807 -111426452 - RMER20A LTR ERVK -206 310 10 1 898 858 306 50 124 chr5 41110988 41111675 -111425584 - MLT-int LTR MaLR -1013 722 87 1 898 441 0 0 0 chr5 41111729 41111778 -111425481 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 898 618 358 57 39 chr5 41111781 41111875 -111425384 + MT2A LTR ERVL 143 235 -298 1 898 333 0 0 0 chr5 41111875 41111912 -111425347 + (CTG)n Simple_repeat Simple_repeat 1 37 0 1 898 618 358 57 39 chr5 41111912 41112201 -111425058 + MT2A LTR ERVL 236 532 -1 1 898 860 285 72 54 chr5 41112276 41112638 -111424621 - MLT1A0 LTR MaLR 0 408 1 1 898 515 269 10 0 chr5 41112914 41113018 -111424241 + RSINE1 SINE B4 5 109 -56 1 898 300 127 0 0 chr5 41113055 41113110 -111424149 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 898 1158 286 18 43 chr5 41113823 41114152 -111423107 - ORR1E LTR MaLR 0 359 39 1 898 471 380 29 55 chr5 41114443 41114825 -111422434 + Lx8 LINE L1 6939 7310 -163 1 898 360 0 0 0 chr5 41114841 41114881 -111422378 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1 898 648 274 9 95 chr5 41115053 41115275 -111421984 + Lx6 LINE L1 7250 7452 -8 1 898 2375 291 50 20 chr5 41116466 41117223 -111420036 - Lx8 LINE L1 -314 7159 6380 1 898 21 0 0 0 chr5 41117477 41117498 -111419761 + AT_rich Low_complexity Low_complexity 1 21 0 1 898 27 0 0 0 chr5 41117526 41117553 -111419706 + AT_rich Low_complexity Low_complexity 1 27 0 1 898 365 206 53 21 chr5 41117636 41117730 -111419529 - MLT1A1 LTR MaLR -2 406 310 1 898 279 0 0 0 chr5 41118885 41118916 -111418343 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 898 1042 181 8 87 chr5 41119166 41119408 -111417851 + URR1B DNA MER1_type 2 224 -1 1 898 2274 127 70 3 chr5 41119966 41120337 -111416922 - Lx3_Mus LINE L1 -166 6843 6448 1 898 776 116 68 7 chr5 41120322 41120469 -111416790 + Lx3_Mus LINE L1 6833 6988 -21 1 898 279 0 0 0 chr5 41120469 41120500 -111416759 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 898 302 0 26 0 chr5 41120518 41120556 -111416703 + (TTTTTG)n Simple_repeat Simple_repeat 1 39 0 1 898 360 378 7 0 chr5 41121219 41121370 -111415889 - L4 LINE RTE -659 1370 1219 1 898 7028 45 2 17 chr5 41121811 41122736 -111414523 + L1Md_F2 LINE L1 5533 6443 -139 1 898 29 0 0 0 chr5 41123088 41123117 -111414142 + AT_rich Low_complexity Low_complexity 1 29 0 1 898 198 0 0 0 chr5 41123194 41123216 -111414043 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1 898 192 77 0 0 chr5 41123315 41123341 -111413918 + (TATG)n Simple_repeat Simple_repeat 2 27 0 2 898 258 349 52 19 chr5 41123586 41123741 -111413518 + L3 LINE CR1 3286 3445 -1044 2 898 456 90 0 0 chr5 41124093 41124160 -111413099 - Lx LINE L1 -127 6527 6461 2 898 2284 104 3 3 chr5 41124160 41124479 -111412780 - Lx LINE L1 -333 6321 6003 2 898 914 311 21 29 chr5 41124771 41125052 -111412207 + MTEb LTR MaLR 4 282 -97 2 898 261 139 0 0 chr5 41125122 41125165 -111412094 + (T)n Simple_repeat Simple_repeat 1 43 0 2 898 232 88 0 0 chr5 41125165 41125199 -111412060 + MTEb LTR MaLR 346 379 0 2 898 2184 259 138 114 chr5 41125567 41126575 -111410684 + RMER1B Other Other 31 1062 -4 2 898 465 328 100 37 chr5 41127038 41127309 -111409950 + B4 SINE B4 1 281 -11 2 898 222 37 0 0 chr5 41127309 41127336 -111409923 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 898 25 0 0 0 chr5 41127355 41127380 -111409879 + AT_rich Low_complexity Low_complexity 1 25 0 2 898 2111 194 32 17 chr5 41128135 41128539 -111408720 - MTC LTR MaLR -2 419 10 2 898 579 289 43 12 chr5 41128568 41128729 -111408530 - B4 SINE B4 -120 172 7 2 898 1255 267 62 28 chr5 41132793 41133148 -111404111 + ORR1D2 LTR MaLR 1 367 -3 2 898 315 364 84 30 chr5 41133381 41133548 -111403711 + Tigger5 DNA MER2_type 82 257 -2149 2 898 320 339 9 0 chr5 41133524 41133639 -111403620 + Tigger5 DNA MER2_type 2291 2406 0 2 898 443 353 35 30 chr5 41133639 41133856 -111403403 + LTR40a LTR ERVL 102 319 -200 2 898 1509 297 22 79 chr5 41134111 41134208 -111403051 + RMER1B Other Other 8 104 -962 2 898 2440 91 56 0 chr5 41134208 41134548 -111402711 + RLTR10D LTR ERVK 1 359 0 2 898 1509 284 23 57 chr5 41134548 41135173 -111402086 + RMER1B Other Other 20 593 -473 2 898 540 100 0 0 chr5 41135750 41135830 -111401429 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 898 1405 194 35 165 chr5 41135830 41136011 -111401248 + ORR1D1 LTR MaLR 5 140 -234 2 898 1303 176 4 41 chr5 41136011 41136277 -111400982 + Lx2 LINE L1 6735 6990 -7 2 898 1405 194 35 165 chr5 41136277 41136520 -111400739 + ORR1D1 LTR MaLR 141 374 0 2 898 399 312 46 0 chr5 41136790 41136899 -111400360 - B4A SINE B4 -10 282 169 2 898 497 365 59 27 chr5 41138373 41138629 -111398630 + B4A SINE B4 10 273 -19 2 898 5181 53 5 3 chr5 41138852 41139509 -111397750 - RLTR13C2 LTR ERVK -150 658 1 2 898 3349 43 2 0 chr5 41139615 41140010 -111397249 - MTA_Mm LTR MaLR 0 396 1 2 898 743 309 50 45 chr5 41140187 41140563 -111396696 + MTEa LTR MaLR 2 379 0 2 898 3122 261 82 52 chr5 41141016 41142789 -111394470 - Lx4B LINE L1 -208 6850 5035 2 898 8864 205 22 52 chr5 41142792 41145380 -111391879 - Lx4B LINE L1 -2475 3402 893 2 898 198 0 0 0 chr5 41145457 41145479 -111391780 + (T)n Simple_repeat Simple_repeat 1 22 0 2 898 3286 104 42 12 chr5 41145856 41146351 -111390908 - L1Md_F2 LINE L1 -12 6570 6061 2 898 14870 83 2 1 chr5 41146351 41146394 -111390865 - L1_Mm LINE L1 -741 5142 5100 2 898 6121 31 0 0 chr5 41146394 41147114 -111390145 - L1Md_T LINE L1 0 6582 5863 2 898 14870 83 2 1 chr5 41147114 41149129 -111388130 - L1_Mm LINE L1 -784 5099 3083 2 898 290 250 73 29 chr5 41149351 41149487 -111387772 - L1MC LINE L1 -628 5716 5575 2 898 369 0 0 0 chr5 41149519 41149560 -111387699 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 898 408 279 11 38 chr5 41149738 41149921 -111387338 - L1MC LINE L1 -1100 5046 4869 2 898 1036 307 36 4 chr5 41150446 41150721 -111386538 + B4A SINE B4 8 291 -1 2 898 248 236 11 0 chr5 41150750 41150839 -111386420 + (TA)n Simple_repeat Simple_repeat 1 90 0 2 898 240 280 0 13 chr5 41150857 41150933 -111386326 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 2 898 1934 97 10 20 chr5 41153530 41153826 -111383433 - L1_Mus3 LINE L1 0 6638 6346 2 898 183 100 0 0 chr5 41154380 41154410 -111382849 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 2 898 620 333 58 10 chr5 41154447 41154653 -111382606 - ID_B1 SINE B4 0 224 9 2 898 369 0 0 0 chr5 41154744 41154785 -111382474 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 898 387 105 0 0 chr5 41154907 41154964 -111382295 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 898 596 324 62 0 chr5 41154977 41155187 -111382072 - B4 SINE B4 -69 223 1 2 898 369 231 13 13 chr5 41155295 41155374 -111381885 + MTEb LTR MaLR 205 283 -96 2 898 3044 63 45 42 chr5 41155478 41155925 -111381334 - L1_Mus1 LINE L1 -1 6566 6119 2 898 189 0 0 0 chr5 41156223 41156244 -111381015 + (T)n Simple_repeat Simple_repeat 1 21 0 2 899 309 247 39 0 chr5 41156985 41157062 -111380197 + LTR41B LTR ERVL 78 157 -601 2 899 633 73 28 0 chr5 41157223 41157332 -111379927 + (CA)n Simple_repeat Simple_repeat 2 113 0 2 899 1496 180 12 53 chr5 41157389 41157877 -111379382 - L1_Mus3 LINE L1 0 6638 6187 2 899 1672 134 93 7 chr5 41157877 41158178 -111379081 + IAPEY3_LTR LTR ERVK 1 327 -5 2 899 4344 92 13 1 chr5 41158181 41159017 -111378242 - L1_Mus3 LINE L1 -446 6192 5347 2 899 7629 106 5 0 chr5 41159013 41160149 -111377110 + L1_Mm LINE L1 3529 4670 -1213 2 899 940 286 28 4 chr5 41160313 41160562 -111376697 - B4A SINE B4 -16 276 22 2 899 195 179 29 15 chr5 41160684 41160752 -111376507 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 899 251 68 68 0 chr5 41161107 41161166 -111376093 + (CAAA)n Simple_repeat Simple_repeat 1 63 0 2 899 322 182 80 10 chr5 41162623 41162723 -111374536 + Lx9 LINE L1 7411 7517 -127 2 899 260 111 0 22 chr5 41162725 41162771 -111374488 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 899 22 35 0 0 chr5 41162779 41162808 -111374451 + AT_rich Low_complexity Low_complexity 1 29 0 2 899 596 176 12 12 chr5 41162832 41162993 -111374266 + Lx9 LINE L1 7477 7637 -7 2 899 1261 242 140 13 chr5 41164930 41165302 -111371957 - MTD LTR MaLR 0 419 1 2 899 213 374 7 44 chr5 41165587 41165724 -111371535 - L2 LINE L2 -854 2565 2434 2 899 305 277 0 45 chr5 41165788 41165919 -111371340 + L1_Rod LINE L1 5489 5625 -672 2 899 411 21 0 0 chr5 41166122 41166170 -111371089 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 899 265 269 6 158 chr5 41166446 41166623 -111370636 - Lx5 LINE L1 -3 7047 6898 2 899 192 40 0 0 chr5 41166845 41166870 -111370389 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 899 22 0 0 0 chr5 41167549 41167571 -111369688 + AT_rich Low_complexity Low_complexity 1 22 0 2 899 306 0 0 0 chr5 41168516 41168550 -111368709 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 899 808 236 32 21 chr5 41169735 41169921 -111367338 - URR1B DNA MER1_type -35 190 3 2 899 453 329 92 7 chr5 41170002 41170284 -111366975 + Lx8 LINE L1 7142 7447 -26 2 899 1950 133 101 57 chr5 41170317 41170772 -111366487 - IAPLTR2_Mm LTR ERVK 0 475 1 2 899 997 177 0 21 chr5 41170807 41170997 -111366262 + B2_Mm2 SINE B2 1 186 -9 2 899 456 322 0 0 chr5 41171334 41171455 -111365804 - RMER1A Other Other -871 159 39 2 899 1128 282 39 18 chr5 41171450 41171869 -111365390 - RMER1A Other Other -583 447 1 2 899 302 241 0 46 chr5 41171911 41171998 -111365261 - Lx6 LINE L1 -1491 5969 5887 2 899 289 259 50 36 chr5 41172059 41172199 -111365060 - Lx4B LINE L1 -8 7050 6909 2 899 2596 155 127 48 chr5 41172183 41172704 -111364555 - L1_Mur3 LINE L1 -4393 1487 897 2 899 973 109 127 0 chr5 41172704 41172869 -111364390 - L1Md_F2 LINE L1 -3 6579 6394 2 899 2596 184 83 45 chr5 41172869 41173113 -111364146 - L1_Mur3 LINE L1 -6832 896 654 2 899 1952 172 312 4 chr5 41173127 41173663 -111363596 - Lx LINE L1 -728 5158 4458 2 899 6719 120 22 0 chr5 41173659 41175101 -111362158 + Lx LINE L1 5177 6648 -6 2 899 1414 291 70 38 chr5 41175136 41175991 -111361268 - L1_Mur3 LINE L1 -7032 696 17 2 899 1146 204 5 9 chr5 41176348 41176566 -111360693 + URR1A DNA MER1_type 10 226 0 2 899 583 353 35 76 chr5 41177106 41177394 -111359865 + MLT1A0 LTR MaLR 88 363 -2 2 899 290 337 0 11 chr5 41177432 41177519 -111359740 - BC1_Mm scRNA scRNA -66 86 1 2 899 330 252 9 9 chr5 41178211 41178319 -111358940 + HAL1 LINE L1 1531 1638 -869 2 899 1529 246 33 3 chr5 41178655 41178990 -111358269 + ORR1D1 LTR MaLR 30 374 0 2 899 262 254 43 9 chr5 41179138 41179253 -111358006 + (TA)n Simple_repeat Simple_repeat 1 119 0 2 899 192 356 29 38 chr5 41179562 41179667 -111357592 + L2c LINE L2 3263 3366 -21 2 899 188 359 43 0 chr5 41179716 41179808 -111357451 - MIRc SINE MIR -98 170 75 2 899 207 0 0 0 chr5 41180174 41180197 -111357062 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 899 3811 43 2 0 chr5 41180905 41181403 -111355856 + L1Md_F3 LINE L1 6107 6584 0 2 899 2057 118 132 31 chr5 41181403 41181740 -111355519 + RLTR44E LTR ERVK 1 384 -68 2 899 5390 36 33 0 chr5 41181740 41182401 -111354858 + L1Md_F3 LINE L1 5902 6584 0 2 899 2057 130 116 29 chr5 41182401 41182458 -111354801 + RLTR44E LTR ERVK 336 424 -28 2 899 21 0 0 0 chr5 41182693 41182714 -111354545 + AT_rich Low_complexity Low_complexity 1 21 0 2 899 22 0 0 0 chr5 41183166 41183188 -111354071 + AT_rich Low_complexity Low_complexity 1 22 0 2 899 1704 48 0 0 chr5 41184066 41184273 -111352986 + MURVY-LTR LTR ERV1 1 207 -312 2 899 8086 61 0 0 chr5 41184273 41185350 -111351909 - L1Md_F2 LINE L1 -766 5117 4041 2 899 3515 57 0 0 chr5 41185354 41185813 -111351446 + L1Md_F2 LINE L1 5129 5587 -296 2 899 8007 52 0 0 chr5 41185814 41186796 -111350463 + L1Md_F2 LINE L1 5589 6570 -12 2 899 2486 40 3 41 chr5 41186796 41187134 -111350125 + MURVY-LTR LTR ERV1 195 519 0 2 899 442 195 9 0 chr5 41187954 41188067 -111349192 - Lx9 LINE L1 -1 7643 7530 2 899 432 175 0 0 chr5 41188067 41188164 -111349095 + T-rich Low_complexity Low_complexity 1 97 0 2 899 1174 68 7 0 chr5 41188166 41188312 -111348947 - B1_Mm SINE Alu 0 147 1 2 899 1175 200 125 6 chr5 41188312 41188649 -111348610 - Lx9 LINE L1 -105 7539 7163 2 899 1198 210 79 60 chr5 41188653 41189054 -111348205 - RMER16 LTR ERVK 0 533 2 2 899 503 181 209 5 chr5 41189056 41189252 -111348007 - Lx9 LINE L1 -517 7127 6892 2 899 208 143 0 0 chr5 41189436 41189471 -111347788 + (TAA)n Simple_repeat Simple_repeat 1 35 0 2 899 24 53 0 0 chr5 41190445 41190483 -111346776 + AT_rich Low_complexity Low_complexity 1 38 0 2 899 33504 65 11 5 chr5 41190622 41196563 -111340696 - L1Md_F3 LINE L1 -14 6570 629 2 899 3430 68 18 2 chr5 41196582 41197038 -111340221 - L1_Mus3 LINE L1 -10 6628 6166 2 899 1048 160 125 0 chr5 41197614 41197814 -111339445 - URR1B DNA MER1_type 0 225 1 2 899 705 295 198 18 chr5 41198209 41198547 -111338712 - MTD LTR MaLR 0 419 21 2 899 418 278 81 23 chr5 41198644 41198817 -111338442 - MTEa LTR MaLR -4 375 193 3 899 3166 161 13 5 chr5 41198895 41199564 -111337695 - Lx4A LINE L1 -855 6203 5526 3 899 3515 159 33 10 chr5 41199564 41200166 -111337093 + Lx4A LINE L1 6443 7058 0 3 899 341 238 34 170 chr5 41200188 41200335 -111336924 - MTEa LTR MaLR -244 135 9 3 899 216 0 0 0 chr5 41202783 41202807 -111334452 + (T)n Simple_repeat Simple_repeat 1 24 0 3 899 463 321 36 7 chr5 41202937 41203075 -111334184 + RSINE1 SINE B4 3 144 -21 3 899 659 286 0 51 chr5 41203095 41203272 -111333987 - MTEa LTR MaLR -209 170 3 3 899 410 335 95 19 chr5 41203278 41203488 -111333771 + MLT1A0 LTR MaLR 102 327 -38 3 899 203 224 73 15 chr5 41203745 41203813 -111333446 - L2 LINE L2 -535 2884 2813 3 899 2984 96 2 2 chr5 41204469 41204919 -111332340 - Lx3_Mus LINE L1 -446 6563 6114 3 899 771 303 42 87 chr5 41204919 41205252 -111332007 + MLT2B5 LTR ERVL 87 404 -313 3 899 1085 35 34 17 chr5 41205475 41205651 -111331608 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 3 899 303 358 63 0 chr5 41205837 41205932 -111331327 - PB1D10 SINE Alu -9 108 8 3 899 232 340 138 28 chr5 41205845 41205954 -111331305 - ID_B1 SINE B4 -34 190 70 3 899 258 264 70 19 chr5 41206384 41206542 -111330717 - Lx7 LINE L1 -20 7676 7511 3 899 432 0 0 0 chr5 41206585 41206633 -111330626 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 899 548 324 58 17 chr5 41206677 41206972 -111330287 - Lx7 LINE L1 -437 7259 6953 3 899 4020 49 31 6 chr5 41207018 41207528 -111329731 + L1Md_F2 LINE L1 6060 6582 0 3 899 188 268 125 0 chr5 41207724 41207780 -111329479 - MIR SINE MIR -81 181 119 3 899 452 285 80 0 chr5 41208458 41208595 -111328664 + B1F2 SINE Alu 2 149 0 3 899 2017 106 3 70 chr5 41208812 41209168 -111328091 - IAPLTR1a_Mm LTR ERVK -5 332 1 3 899 25147 15 3 0 chr5 41209168 41212115 -111325144 - IAPEz-int LTR ERVK 0 6481 3525 3 899 873 81 24 0 chr5 41212115 41212238 -111325021 - IAPEz-int LTR ERVK -2770 4910 4785 3 899 1728 115 4 4 chr5 41212235 41212497 -111324762 - IAPEz-int LTR ERVK -5183 2497 2236 3 899 424 38 0 0 chr5 41212496 41212549 -111324710 - IAPEz-int LTR ERVK -5070 1411 1359 3 899 3255 57 4 53 chr5 41212549 41213316 -111323943 - IAPEz-int LTR ERVK -5819 662 9 3 899 2040 102 3 70 chr5 41213316 41213675 -111323584 - IAPLTR1a_Mm LTR ERVK -2 335 1 3 899 7065 70 7 7 chr5 41214067 41215623 -111321636 - L1Md_F2 LINE L1 0 6582 5032 3 899 9269 72 8 82 chr5 41215618 41217149 -111320110 + L1_Mm LINE L1 3791 5207 -676 3 899 260 49 49 0 chr5 41217372 41217413 -111319846 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 899 7291 61 43 1 chr5 41217769 41218770 -111318489 - L1_Mus3 LINE L1 -7 6631 5589 3 899 7304 50 25 2 chr5 41219322 41220485 -111316774 - L1Md_F2 LINE L1 -1 6581 5392 3 899 1447 111 9 9 chr5 41220480 41220774 -111316485 - L1_Mus3 LINE L1 -346 6292 5902 3 899 24 53 0 0 chr5 41220829 41220867 -111316392 + AT_rich Low_complexity Low_complexity 1 38 0 3 899 1269 322 6 6 chr5 41220867 41221232 -111316027 - MTEa LTR MaLR -4 375 11 3 899 27 81 0 0 chr5 41221490 41221552 -111315707 + AT_rich Low_complexity Low_complexity 1 62 0 3 899 1296 306 53 46 chr5 41221598 41222224 -111315035 - Lx8 LINE L1 -576 6897 6268 3 899 2281 91 24 15 chr5 41222639 41222973 -111314286 + Lx3_Mus LINE L1 6672 7008 -1 3 899 351 0 0 0 chr5 41223628 41223667 -111313592 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 899 281 347 93 39 chr5 41223788 41223917 -111313342 + ID_B1 SINE B4 81 216 -8 3 899 244 351 77 84 chr5 41223924 41224067 -111313192 + RSINE1 SINE B4 3 144 -21 3 899 432 51 0 0 chr5 41224085 41224144 -111313115 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 899 198 0 0 0 chr5 41224174 41224196 -111313063 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 899 209 267 17 0 chr5 41224846 41224906 -111312353 + CT-rich Low_complexity Low_complexity 4 64 0 3 899 544 346 45 41 chr5 41225987 41226207 -111311052 + B4A SINE B4 1 221 -71 3 899 345 198 19 21 chr5 41226266 41226399 -111310860 - MTD LTR MaLR -2 419 234 3 899 604 269 23 35 chr5 41226411 41226584 -111310675 - MTD LTR MaLR -243 176 6 3 899 710 209 0 0 chr5 41227565 41227694 -111309565 + B3 SINE B2 2 130 -86 3 899 22 35 0 0 chr5 41227703 41227732 -111309527 + AT_rich Low_complexity Low_complexity 1 29 0 3 899 265 308 21 21 chr5 41227793 41227886 -111309373 + MLT1A0 LTR MaLR 33 125 -240 3 899 1357 118 7 7 chr5 41228008 41228227 -111309032 + L1_Mm LINE L1 5476 5669 -214 3 899 1009 307 25 32 chr5 41228251 41228567 -111308692 - MTE2b LTR MaLR -5 374 61 3 899 799 202 55 31 chr5 41228944 41229187 -111308072 - RMER15 LTR ERVL 0 575 277 3 899 3731 60 0 0 chr5 41229200 41229679 -111307580 - RLTR13B3 LTR ERVK -97 832 354 3 899 1290 205 22 14 chr5 41229680 41229957 -111307302 - RMER15 LTR ERVL -296 279 1 3 899 705 335 32 12 chr5 41230220 41230468 -111306791 + MTE2a LTR MaLR 123 375 -4 3 899 237 291 38 12 chr5 41231210 41231290 -111305969 - MTEb LTR MaLR -19 360 279 3 899 1815 77 0 0 chr5 41231304 41231538 -111305721 + L1_Mus1 LINE L1 6333 6566 -1 3 899 206 32 32 0 chr5 41231545 41231576 -111305683 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 899 1176 237 179 16 chr5 41231655 41232084 -111305175 + RLTR11A2 LTR ERVK 5 503 -24 3 899 243 133 0 0 chr5 41232111 41232156 -111305103 + (CAA)n Simple_repeat Simple_repeat 2 46 0 3 899 4067 264 63 46 chr5 41232159 41233412 -111303847 - Lx7 LINE L1 -246 7450 6177 3 899 617 126 0 0 chr5 41233449 41233544 -111303715 + L1_Mur3 LINE L1 3494 3588 -2292 3 899 3190 169 177 54 chr5 41233654 41233821 -111303438 - L1_Mur3 LINE L1 -3664 2216 2075 3 899 309 89 0 0 chr5 41233821 41233866 -111303393 + (TGG)n Simple_repeat Simple_repeat 1 45 0 3 899 5232 231 75 30 chr5 41233866 41236372 -111300887 - L1_Mur3 LINE L1 -3806 2074 17 3 899 1030 117 0 0 chr5 41236372 41236517 -111300742 + B1_Mus1 SINE Alu 4 148 0 3 899 1650 280 70 25 chr5 41236517 41236594 -111300665 - L1_Mur3 LINE L1 -7592 136 57 3 899 213 94 0 0 chr5 41236626 41236658 -111300601 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 899 21 0 0 0 chr5 41236764 41236785 -111300474 + AT_rich Low_complexity Low_complexity 1 21 0 3 899 3288 180 65 9 chr5 41237054 41237726 -111299533 + L1_Mus1 LINE L1 387 1096 -5520 3 899 23 0 0 0 chr5 41237807 41237830 -111299429 + AT_rich Low_complexity Low_complexity 1 23 0 3 899 27753 108 20 51 chr5 41237962 41243606 -111293653 + L1_Mus1 LINE L1 1108 6567 0 3 899 192 40 0 0 chr5 41243706 41243731 -111293528 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 3 899 256 289 215 36 chr5 41244284 41244503 -111292756 - ORR1E LTR MaLR -101 258 1 3 899 715 311 42 23 chr5 41244503 41244760 -111292499 + MLT1A0 LTR MaLR 118 371 -3 3 899 26 30 0 0 chr5 41244782 41244815 -111292444 + AT_rich Low_complexity Low_complexity 1 33 0 3 899 306 0 0 0 chr5 41245218 41245252 -111292007 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 899 336 111 0 0 chr5 41245254 41245317 -111291942 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 3 899 315 0 0 0 chr5 41245317 41245352 -111291907 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 899 269 272 46 46 chr5 41245609 41245740 -111291519 + MARNA DNA Mariner 209 339 -247 3 899 603 0 0 0 chr5 41246035 41246102 -111291157 + (TAAAA)n Simple_repeat Simple_repeat 3 69 0 3 899 851 319 148 20 chr5 41246151 41246509 -111290750 - MTD LTR MaLR 0 419 16 3 899 1175 253 81 17 chr5 41246508 41246854 -111290405 + MTD LTR MaLR 43 405 -14 3 899 270 354 50 0 chr5 41247064 41247225 -111290034 - Tigger13a DNA MER2_type -309 462 294 3 899 1168 125 23 0 chr5 41247665 41247841 -111289418 + B2_Mm2 SINE B2 1 180 -15 3 899 245 320 0 49 chr5 41248053 41248135 -111289124 + ID4_ SINE ID 3 80 -3 3 899 293 358 88 95 chr5 41248267 41248539 -111288720 - MLT1C LTR MaLR -38 429 146 3 899 674 326 88 14 chr5 41248539 41248890 -111288369 - MTEb LTR MaLR 0 379 3 3 899 293 358 88 95 chr5 41248890 41249049 -111288210 - MLT1C LTR MaLR -322 145 1 3 899 285 167 0 0 chr5 41249305 41249359 -111287900 + (CACG)n Simple_repeat Simple_repeat 1 54 0 3 899 249 176 36 18 chr5 41249972 41250082 -111287177 + (TA)n Simple_repeat Simple_repeat 2 113 0 3 899 369 0 0 0 chr5 41250103 41250144 -111287115 + (TATG)n Simple_repeat Simple_repeat 1 41 0 3 899 29 0 0 0 chr5 41251929 41251958 -111285301 + AT_rich Low_complexity Low_complexity 1 29 0 3 899 389 313 110 29 chr5 41252334 41252546 -111284713 - MLT1B LTR MaLR -155 219 3 3 899 708 237 15 0 chr5 41253727 41253858 -111283401 - ETnERV2-int LTR ERVK -204 7202 7070 3 899 598 326 104 20 chr5 41254450 41254700 -111282559 + B4 SINE B4 10 280 -12 3 899 21 0 0 0 chr5 41254790 41254811 -111282448 + AT_rich Low_complexity Low_complexity 1 21 0 3 899 211 217 22 0 chr5 41257125 41257171 -111280088 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 899 550 321 47 47 chr5 41257324 41257517 -111279742 + B3 SINE B2 3 195 -21 3 899 34906 66 7 1 chr5 41257582 41262950 -111274309 + L1Md_F3 LINE L1 232 5587 -296 3 899 7731 51 4 5 chr5 41262951 41263934 -111273325 + L1Md_F3 LINE L1 5589 6570 -14 3 899 210 427 20 20 chr5 41264978 41265131 -111272128 - MER5A DNA MER1_type -36 153 1 3 899 207 69 0 0 chr5 41265249 41265278 -111271981 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 899 227 96 0 88 chr5 41266250 41266307 -111270952 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 899 207 0 0 0 chr5 41266307 41266330 -111270929 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 899 284 200 0 13 chr5 41266967 41267043 -111270216 + GA-rich Low_complexity Low_complexity 2 76 0 3 899 740 168 172 5 chr5 41267083 41267286 -111269973 - Lx2B LINE L1 -3 6997 6761 3 899 192 77 0 0 chr5 41267286 41267312 -111269947 + (TATG)n Simple_repeat Simple_repeat 3 28 0 3 899 386 355 108 54 chr5 41267796 41268112 -111269147 - ORR1E LTR MaLR -18 341 9 3 899 551 382 28 39 chr5 41268222 41268444 -111268815 + B4A SINE B4 1 224 -68 3 899 360 43 0 0 chr5 41268444 41268490 -111268769 + (CATA)n Simple_repeat Simple_repeat 2 47 0 3 899 551 382 28 39 chr5 41268490 41268550 -111268709 + B4A SINE B4 225 280 -12 3 899 249 57 0 0 chr5 41270290 41270325 -111266934 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 899 207 0 0 0 chr5 41270325 41270348 -111266911 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 899 1404 326 60 48 chr5 41270565 41271385 -111265874 + Lx7 LINE L1 6392 7183 -513 4 899 259 311 65 32 chr5 41274767 41274890 -111262369 + MIRb SINE MIR 1 127 -141 4 899 21 0 0 0 chr5 41275350 41275371 -111261888 + AT_rich Low_complexity Low_complexity 1 21 0 4 899 266 242 51 71 chr5 41275574 41275672 -111261587 + RMER15 LTR ERVL 1 96 -479 4 899 564 283 49 49 chr5 41275718 41275941 -111261318 + RMER15 LTR ERVL 254 476 -99 4 899 408 40 0 0 chr5 41275947 41275997 -111261262 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 899 257 358 42 56 chr5 41276069 41276353 -111260906 - B4A SINE B4 -10 282 3 4 899 198 103 0 0 chr5 41276525 41276554 -111260705 + (A)n Simple_repeat Simple_repeat 1 29 0 4 899 301 364 19 115 chr5 41277134 41277342 -111259917 + MER20 DNA MER1_type 7 194 -25 4 899 27 62 0 0 chr5 41277457 41277505 -111259754 + AT_rich Low_complexity Low_complexity 1 48 0 4 899 429 110 0 0 chr5 41277758 41277831 -111259428 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 899 212 125 42 0 chr5 41277897 41277945 -111259314 + T-rich Low_complexity Low_complexity 3 52 0 4 899 1135 82 0 7 chr5 41277946 41278094 -111259165 - B1_Mus1 SINE Alu 0 148 2 4 899 23 0 0 0 chr5 41279055 41279078 -111258181 + AT_rich Low_complexity Low_complexity 1 23 0 4 899 1299 289 187 5 chr5 41279159 41279774 -111257485 - Lx8 LINE L1 -4 7469 6743 4 899 1436 321 27 21 chr5 41279787 41280268 -111256991 - Lx8 LINE L1 -810 6834 6209 4 899 491 169 34 27 chr5 41280268 41280414 -111256845 + Lx9 LINE L1 7491 7637 -7 4 899 624 366 33 54 chr5 41280414 41280483 -111256776 - Lx8 LINE L1 -1285 6359 6296 4 899 496 307 0 54 chr5 41280489 41280637 -111256622 + RSINE1 SINE B4 2 141 -24 4 899 461 252 183 40 chr5 41281837 41282159 -111255100 - RLTR9A LTR ERVK 0 368 1 4 899 495 78 0 0 chr5 41282168 41282245 -111255014 + (TTTTTG)n Simple_repeat Simple_repeat 2 78 0 4 899 706 294 18 14 chr5 41282600 41282876 -111254383 - RLTR6-int LTR ERV1 -115 7663 7387 4 899 16055 129 37 21 chr5 41282871 41285343 -111251916 - RMER16-int LTR ERVK -1068 4338 1823 4 899 4242 82 0 2 chr5 41285343 41285906 -111251353 - L1_Mus2 LINE L1 -9 6557 5996 4 899 16055 129 37 21 chr5 41285906 41286160 -111251099 - RMER16-int LTR ERVK -3584 1822 1568 4 899 812 271 89 64 chr5 41286311 41286761 -111250498 - RMER16-int LTR ERVK -3909 2258 1798 4 899 234 138 259 0 chr5 41286762 41286820 -111250439 - RMER16 LTR ERVK -219 314 242 4 899 361 194 0 15 chr5 41286822 41286890 -111250369 - ETnERV2-int LTR ERVK -4866 2540 2474 4 899 1563 173 158 81 chr5 41286921 41287492 -111249767 - RMER16-int LTR ERVK -5283 854 255 4 900 432 275 199 47 chr5 41287930 41288247 -111249012 - RLTR9A LTR ERVK -3 365 1 4 900 247 321 12 12 chr5 41288490 41288572 -111248687 + MER97a DNA MER1_type? 310 391 -503 4 900 270 354 33 5 chr5 41288717 41288927 -111248332 + MER97a DNA MER1_type? 637 852 -42 4 900 1860 178 112 74 chr5 41288976 41289406 -111247853 - RLTR41 LTR ERV1 0 446 1 4 900 884 174 77 39 chr5 41289406 41289426 -111247833 + Lx3B LINE L1 6731 6750 -223 4 900 315 0 0 0 chr5 41289426 41289461 -111247798 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 900 884 174 77 39 chr5 41289461 41289571 -111247688 + Lx3B LINE L1 6751 6871 -102 4 900 3089 51 8 5 chr5 41289571 41289966 -111247293 - MTA_Mm LTR MaLR 0 396 1 4 900 884 174 77 39 chr5 41289966 41290067 -111247192 + Lx3B LINE L1 6872 6972 -1 4 900 25 0 0 0 chr5 41290067 41290092 -111247167 + AT_rich Low_complexity Low_complexity 1 25 0 4 900 246 234 88 8 chr5 41290598 41290723 -111246536 + L1MB7 LINE L1 2808 2942 -3204 4 900 1323 229 82 27 chr5 41290830 41291158 -111246101 + ORR1C1 LTR MaLR 5 350 -28 4 900 485 126 0 22 chr5 41291329 41291403 -111245856 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 4 900 204 40 0 0 chr5 41291403 41291428 -111245831 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 4 900 1041 75 0 0 chr5 41291428 41291562 -111245697 - B1_Mm SINE Alu -13 134 1 4 900 485 126 0 22 chr5 41291562 41291575 -111245684 + (TTTC)n Simple_repeat Simple_repeat 4 15 0 4 900 781 308 50 27 chr5 41291593 41291853 -111245406 - B4 SINE B4 0 292 27 4 900 834 338 34 73 chr5 41291850 41292204 -111245055 + ORR1E LTR MaLR 9 348 -11 4 900 1307 232 214 19 chr5 41292310 41292736 -111244523 + MT2B2 LTR ERVL 11 519 -65 4 900 2902 189 56 30 chr5 41292777 41293441 -111243818 - RMER6C LTR ERVK -4 686 6 4 900 366 61 0 0 chr5 41293448 41293497 -111243762 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 4 900 761 157 0 6 chr5 41293491 41293664 -111243595 + CT-rich Low_complexity Low_complexity 2 173 0 4 900 388 330 52 48 chr5 41293912 41294163 -111243096 + L1MB7 LINE L1 4630 4881 -1265 4 900 227 75 0 70 chr5 41294188 41294231 -111243028 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 900 311 298 93 60 chr5 41294232 41294532 -111242727 + L1MB7 LINE L1 4999 5308 -838 4 900 244 289 46 9 chr5 41294843 41294960 -111242299 + L1M2 LINE L1 5490 5613 -731 4 900 348 308 71 60 chr5 41295167 41295450 -111241809 + L1MB7 LINE L1 5853 6138 -46 4 900 1052 175 9 75 chr5 41295559 41295787 -111241472 - ORR1C2 LTR MaLR 0 384 172 4 900 561 150 0 0 chr5 41295787 41295920 -111241339 + GA-rich Low_complexity Low_complexity 1 133 0 4 900 290 167 107 40 chr5 41295920 41295995 -111241264 - ORR1C2 LTR MaLR -190 194 115 4 900 219 139 0 0 chr5 41296051 41296087 -111241172 + (A)n Simple_repeat Simple_repeat 1 36 0 4 900 515 249 136 0 chr5 41297367 41297544 -111239715 + Lx9 LINE L1 7437 7637 -7 4 900 26 64 0 0 chr5 41298223 41298270 -111238989 + AT_rich Low_complexity Low_complexity 1 47 0 4 900 27 49 0 0 chr5 41298286 41298327 -111238932 + AT_rich Low_complexity Low_complexity 1 41 0 4 900 7238 70 17 1 chr5 41298369 41299913 -111237346 - L1Md_F2 LINE L1 -13 6569 5001 4 900 3759 197 174 48 chr5 41300117 41301097 -111236162 + RLTR25A LTR ERVK 1 1103 0 4 900 759 119 0 0 chr5 41301240 41301366 -111235893 + (TC)n Simple_repeat Simple_repeat 2 127 0 4 900 429 54 0 0 chr5 41301366 41301422 -111235837 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 900 387 0 0 0 chr5 41301422 41301464 -111235795 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 900 412 252 27 0 chr5 41301519 41301630 -111235629 - MTEa LTR MaLR 0 379 266 4 900 3004 70 0 27 chr5 41301746 41302202 -111235057 + L1_Mus1 LINE L1 6169 6567 0 4 900 3574 220 56 70 chr5 41302790 41304348 -111232911 + Lx2 LINE L1 5470 6996 -1 4 900 255 304 11 0 chr5 41304955 41305047 -111232212 + L1MB7 LINE L1 6061 6153 -31 4 900 1358 298 68 56 chr5 41305049 41305728 -111231531 - Lx8 LINE L1 -763 6710 6024 4 900 281 84 0 53 chr5 41305877 41305952 -111231307 + (TATAG)n Simple_repeat Simple_repeat 4 74 0 4 900 220 200 0 0 chr5 41305984 41306029 -111231230 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 900 4224 124 7 53 chr5 41306080 41306819 -111230440 - Lx3C LINE L1 0 6976 6272 4 900 288 398 93 55 chr5 41307869 41308159 -111229100 - LTR16B2 LTR ERVL -161 301 1 4 900 2380 98 3 0 chr5 41308636 41308962 -111228297 + ORR1A2 LTR MaLR 1 327 0 4 900 972 69 31 0 chr5 41309966 41310096 -111227163 - L1Md_T LINE L1 -187 6395 6262 4 900 2028 4 0 0 chr5 41310096 41310327 -111226932 + L1Md_T LINE L1 6352 6582 0 4 900 207 208 51 13 chr5 41311097 41311175 -111226084 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 4 900 387 0 0 0 chr5 41311601 41311644 -111225615 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 900 519 153 0 0 chr5 41312564 41312662 -111224597 + L1_Mus3 LINE L1 6536 6633 -5 4 900 195 42 0 0 chr5 41312691 41312715 -111224544 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 4 900 218 296 89 30 chr5 41312802 41312903 -111224356 + MER5A DNA MER1_type 3 109 -80 4 900 23716 6 0 0 chr5 41314321 41317015 -111220244 + L1Md_A LINE L1 2893 5586 -297 4 900 9046 1 0 0 chr5 41317015 41318011 -111219248 + L1Md_A LINE L1 5587 6582 0 4 900 26 30 0 0 chr5 41318018 41318051 -111219208 + AT_rich Low_complexity Low_complexity 1 33 0 4 900 402 275 42 0 chr5 41319268 41319391 -111217868 - MIR SINE MIR -107 161 30 4 900 445 248 18 44 chr5 41321479 41321593 -111215666 - ORR1C2 LTR MaLR 0 384 274 4 900 653 241 6 66 chr5 41321612 41321794 -111215465 - ORR1C2 LTR MaLR -213 171 1 4 900 252 287 55 94 chr5 41322242 41322369 -111214890 + ORR1D1 LTR MaLR 19 140 -234 4 900 480 323 12 12 chr5 41323166 41323329 -111213930 + RSINE1 SINE B4 3 165 0 4 900 658 186 0 9 chr5 41323420 41323534 -111213725 - Lx7 LINE L1 -1394 6302 6190 4 900 667 244 10 69 chr5 41323534 41323762 -111213497 + ORR1B2 LTR MaLR 1 191 -138 4 900 289 254 80 56 chr5 41323868 41324081 -111213178 + Lx7 LINE L1 7473 7690 -6 4 900 228 170 0 0 chr5 41324211 41324264 -111212995 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 4 900 531 323 69 0 chr5 41326026 41326215 -111211044 + B3 SINE B2 1 202 -14 4 900 284 0 28 0 chr5 41327135 41327171 -111210088 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 900 2022 233 69 35 chr5 41327341 41327849 -111209410 - MT2A LTR ERVL -6 527 3 4 900 180 226 96 106 chr5 41328011 41328105 -111209154 + L4 LINE RTE 1070 1162 -867 4 900 624 59 0 0 chr5 41328505 41328590 -111208669 - MT-int LTR MaLR -508 590 506 4 900 2312 47 14 0 chr5 41328605 41328902 -111208357 + MTA_Mm LTR MaLR 96 396 0 4 900 9083 42 0 0 chr5 41328902 41330000 -111207259 + MTA_Mm-int LTR MaLR 1 1098 0 4 900 3282 51 2 0 chr5 41330000 41330395 -111206864 + MTA_Mm LTR MaLR 1 396 0 4 900 24 0 0 0 chr5 41330400 41330424 -111206835 + AT_rich Low_complexity Low_complexity 1 24 0 4 900 1694 192 26 38 chr5 41330435 41330862 -111206397 + L1_Mur3 LINE L1 4282 4703 -1177 4 900 405 0 0 0 chr5 41330923 41330968 -111206291 + (TAA)n Simple_repeat Simple_repeat 2 46 0 4 900 946 225 29 117 chr5 41331038 41331415 -111205844 + Lx7 LINE L1 7353 7696 0 4 900 21 0 0 0 chr5 41331866 41331887 -111205372 + AT_rich Low_complexity Low_complexity 1 21 0 4 900 387 288 132 34 chr5 41332179 41332384 -111204875 - RMER15 LTR ERVL -15 560 336 4 900 5296 54 5 1 chr5 41332989 41333660 -111203599 - L1_Mus3 LINE L1 0 6638 5966 4 900 302 403 43 61 chr5 41333891 41334055 -111203204 - RSINE1 SINE B4 -2 163 3 4 900 1267 149 55 51 chr5 41335726 41336001 -111201258 - Lx LINE L1 -25 6629 6354 4 900 315 0 0 0 chr5 41336036 41336071 -111201188 + (A)n Simple_repeat Simple_repeat 1 35 0 4 900 250 328 35 63 chr5 41336236 41336379 -111200880 + MIR3 SINE MIR 66 204 -4 4 900 21 0 0 0 chr5 41336684 41336705 -111200554 + AT_rich Low_complexity Low_complexity 1 21 0 5 900 413 373 105 4 chr5 41337322 41337551 -111199708 + LTR16B2 LTR ERVL 1 252 -210 5 900 277 328 65 16 chr5 41337723 41337847 -111199412 + LTR16B2 LTR ERVL 360 489 0 5 900 21 0 0 0 chr5 41337932 41337953 -111199306 + AT_rich Low_complexity Low_complexity 1 21 0 5 900 3003 32 0 0 chr5 41337955 41338301 -111198958 + ORR1A0 LTR MaLR 1 346 0 5 900 290 234 0 0 chr5 41339176 41339240 -111198019 - PB1D10 SINE Alu -2 115 52 5 900 920 266 40 98 chr5 41339879 41340154 -111197105 - MTEa LTR MaLR -55 324 66 5 900 617 338 145 10 chr5 41340210 41340596 -111196663 - MTEa-int LTR MaLR -519 1061 624 5 900 231 317 61 45 chr5 41340637 41340769 -111196490 - RMER20B LTR ERVK -38 589 456 5 900 1721 293 38 12 chr5 41341158 41341656 -111195603 - MTEa-int LTR MaLR -1067 513 3 5 900 612 286 115 82 chr5 41341657 41342023 -111195236 - MTEa LTR MaLR 0 379 2 5 900 404 276 58 80 chr5 41343501 41343639 -111193620 - B1F1 SINE Alu -14 135 1 5 900 840 20 0 0 chr5 41343967 41344065 -111193194 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 5 900 231 125 0 0 chr5 41344757 41344797 -111192462 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 5 900 267 306 0 0 chr5 41345612 41345684 -111191575 + MER63D DNA AcHobo 295 366 -695 5 900 1003 287 56 73 chr5 41346275 41346351 -111190908 - L1MA6 LINE L1 -361 5939 5871 5 900 2951 53 3 3 chr5 41346351 41346730 -111190529 - L1Md_F2 LINE L1 0 6582 6204 5 900 1003 286 66 56 chr5 41346730 41347395 -111189864 - L1MA6 LINE L1 -430 5870 5197 5 900 205 253 54 98 chr5 41347793 41347885 -111189374 + MIRm SINE MIR 80 167 -109 5 900 2981 258 46 9 chr5 41348713 41349459 -111187800 + Lx7 LINE L1 6717 7489 -207 5 900 222 160 0 0 chr5 41349467 41349517 -111187742 + GA-rich Low_complexity Low_complexity 3 52 0 5 900 378 252 0 0 chr5 41349518 41349617 -111187642 + Lx7 LINE L1 7579 7677 -19 5 900 1216 275 28 16 chr5 41349662 41349980 -111187279 - Lx6 LINE L1 -37 7423 7102 5 900 24 100 0 0 chr5 41349980 41350060 -111187199 + AT_rich Low_complexity Low_complexity 1 80 0 5 900 897 273 16 13 chr5 41350540 41350747 -111186512 - B3 SINE B2 -30 186 1 5 900 413 176 28 0 chr5 41350769 41350877 -111186382 - Lx9 LINE L1 -8 7636 7526 5 900 254 302 0 57 chr5 41351220 41351343 -111185916 + CT-rich Low_complexity Low_complexity 5 120 0 5 900 1031 322 41 0 chr5 41352466 41352804 -111184455 - MTC LTR MaLR -15 406 55 5 900 27458 138 16 11 chr5 41352804 41358926 -111178333 - L1_Mus3 LINE L1 -39 6599 509 5 900 341 282 2 75 chr5 41358930 41359067 -111178192 - MTC LTR MaLR -271 125 1 5 900 1984 148 6 44 chr5 41359103 41359161 -111178098 - ORR1A2 LTR MaLR 0 327 271 5 900 224 30 30 0 chr5 41359161 41359194 -111178065 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 900 1984 148 6 44 chr5 41359194 41359475 -111177784 - ORR1A2 LTR MaLR -57 270 1 5 900 288 194 0 0 chr5 41360282 41360295 -111176964 + (TAG)n Simple_repeat Simple_repeat 1 13 0 5 900 354 23 0 0 chr5 41360295 41360338 -111176921 + (GGA)n Simple_repeat Simple_repeat 3 45 0 5 900 288 194 0 0 chr5 41360338 41360396 -111176863 + (TAG)n Simple_repeat Simple_repeat 2 59 0 5 900 258 32 0 0 chr5 41360415 41360446 -111176813 + (TTA)n Simple_repeat Simple_repeat 2 32 0 5 900 676 363 66 54 chr5 41360537 41360962 -111176297 - MT2A LTR ERVL -103 430 1 5 900 418 311 68 0 chr5 41360962 41361139 -111176120 + Lx9 LINE L1 7316 7504 -140 5 900 1135 63 0 14 chr5 41361810 41361954 -111175305 + B1_Mm SINE Alu 1 142 -5 5 900 497 304 139 59 chr5 41362293 41362391 -111174868 + MTD LTR MaLR 1 108 -311 5 900 3564 41 32 2 chr5 41362391 41362830 -111174429 + L1Md_F3 LINE L1 6122 6573 -11 5 900 497 304 139 59 chr5 41362830 41362953 -111174306 + MTD LTR MaLR 109 248 -171 5 900 597 64 0 0 chr5 41362953 41363031 -111174228 + (GA)n Simple_repeat Simple_repeat 2 79 0 5 900 497 304 139 59 chr5 41363031 41363182 -111174077 + MTD LTR MaLR 249 404 -15 5 900 23 33 0 0 chr5 41363937 41363967 -111173292 + AT_rich Low_complexity Low_complexity 1 30 0 5 900 2542 67 13 53 chr5 41364332 41364709 -111172550 + L1_Mus2 LINE L1 6205 6566 0 5 900 2073 262 82 46 chr5 41365613 41366884 -111170375 + RMER1B Other Other 65 1048 -18 5 900 270 0 0 0 chr5 41366899 41366929 -111170330 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 900 348 298 52 30 chr5 41367473 41367608 -111169651 - LTR79 LTR ERVL -38 489 352 5 900 346 343 82 31 chr5 41368578 41368955 -111168304 + MLT2B3 LTR ERVL 32 525 -42 5 900 468 0 0 0 chr5 41370261 41370313 -111166946 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 900 3087 58 8 5 chr5 41370938 41371337 -111165922 + MTB LTR MaLR 1 400 0 5 900 318 290 27 14 chr5 41371897 41372044 -111165215 + (CATATA)n Simple_repeat Simple_repeat 5 153 0 5 900 526 281 55 0 chr5 41372044 41372261 -111164998 - Lx7 LINE L1 -1797 5899 5671 5 900 2506 120 2 41 chr5 41372693 41373110 -111164149 + L1_Mus4 LINE L1 6233 6633 -3 5 900 576 0 0 0 chr5 41374028 41374092 -111163167 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 900 25 65 0 0 chr5 41375599 41375645 -111161614 + AT_rich Low_complexity Low_complexity 1 46 0 5 900 488 288 88 65 chr5 41376151 41376564 -111160695 + MLT1D LTR MaLR 13 496 -9 5 900 321 286 90 103 chr5 41376885 41377119 -111160140 + RMER15 LTR ERVL 4 234 -341 5 900 213 180 0 0 chr5 41377158 41377208 -111160051 + CT-rich Low_complexity Low_complexity 3 52 0 5 900 746 359 53 5 chr5 41377372 41377750 -111159509 + MLT1C LTR MaLR 16 411 -56 5 900 205 211 0 0 chr5 41378507 41378545 -111158714 + T-rich Low_complexity Low_complexity 1 38 0 5 900 922 298 30 42 chr5 41378909 41379270 -111157989 + ORR1E LTR MaLR 3 359 0 5 900 591 344 0 13 chr5 41380451 41380607 -111156652 + B3A SINE B2 9 162 -36 5 900 411 92 0 0 chr5 41380611 41380676 -111156583 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 900 946 275 30 46 chr5 41381062 41381586 -111155673 + MYSERV-int LTR ERVK 4325 4647 -1903 5 900 504 320 108 5 chr5 41381656 41381879 -111155380 + MYSERV-int LTR ERVK 4843 5088 -1462 5 900 391 288 8 78 chr5 41381895 41382023 -111155236 + RMER4A LTR ERVK 274 392 -74 5 900 228 388 28 37 chr5 41382417 41382524 -111154735 + Arthur1 DNA Tip100 195 300 -3647 5 900 810 272 20 5 chr5 41382529 41382732 -111154527 + B3 SINE B2 2 207 -9 5 900 389 333 71 0 chr5 41382819 41382945 -111154314 + ID_B1 SINE B4 85 219 -5 5 900 850 227 24 24 chr5 41382966 41383178 -111154081 + L1_Mur2 LINE L1 54 265 -6447 5 900 4027 201 11 16 chr5 41383192 41383999 -111153260 + Lx4A LINE L1 6246 7048 -10 5 900 804 273 60 5 chr5 41384040 41384239 -111153020 + B3 SINE B2 6 215 -1 5 900 242 378 101 15 chr5 41384377 41384576 -111152683 + Arthur1 DNA Tip100 472 687 -3260 5 900 798 356 25 19 chr5 41384871 41385232 -111152027 - MLT1A0 LTR MaLR 0 365 3 5 900 230 340 11 11 chr5 41386334 41386429 -111150830 - MER94 DNA AcHobo -8 126 32 5 900 542 346 27 30 chr5 41386571 41386833 -111150426 - MLT1B LTR MaLR -2 388 128 5 900 462 322 42 0 chr5 41386898 41387016 -111150243 - ID_B1 SINE B4 -88 136 14 5 900 4316 201 58 11 chr5 41387067 41388457 -111148802 - Lx7 LINE L1 -676 7020 5949 5 900 24 85 0 0 chr5 41388621 41388680 -111148579 + AT_rich Low_complexity Low_complexity 1 59 0 5 900 345 327 10 0 chr5 41388872 41388976 -111148283 + MER119 DNA MER1_type 462 566 -17 5 900 411 21 0 0 chr5 41389002 41389050 -111148209 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 900 552 30 0 0 chr5 41389050 41389115 -111148144 + (GA)n Simple_repeat Simple_repeat 2 67 0 5 900 897 93 0 0 chr5 41390250 41390401 -111146858 + (GA)n Simple_repeat Simple_repeat 2 152 0 5 900 31500 89 15 6 chr5 41390556 41396678 -111140581 - L1Md_F2 LINE L1 0 6582 404 5 900 342 284 110 16 chr5 41396883 41397080 -111140179 - MIR SINE MIR 0 262 51 5 900 399 89 0 0 chr5 41398227 41398283 -111138976 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 900 1000 228 76 65 chr5 41398485 41398840 -111138419 - Lx2B LINE L1 -2 6998 6608 5 900 597 318 22 4 chr5 41399937 41400115 -111137144 + B3 SINE B2 3 181 -17 5 900 387 0 0 0 chr5 41400117 41400160 -111137099 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 900 851 244 48 19 chr5 41400464 41400673 -111136586 - B3 SINE B2 0 216 2 5 900 239 271 68 93 chr5 41401297 41401415 -111135844 + RLTR22_Mus LTR ERVK 1227 1341 -467 5 900 2897 172 29 45 chr5 41401797 41402346 -111134913 - RLTR20B2 LTR ERVK -20 540 1 5 900 921 275 82 24 chr5 41402346 41402607 -111134652 - MTD LTR MaLR -55 364 83 5 900 225 300 30 91 chr5 41402752 41402851 -111134408 + MLT1A LTR MaLR 4 96 -278 5 900 1936 156 67 14 chr5 41403245 41403591 -111133668 + ORR1B2 LTR MaLR 2 365 -2 5 900 3043 66 15 0 chr5 41403950 41404344 -111132915 - MTB LTR MaLR 0 400 1 5 900 21 0 0 0 chr5 41405495 41405516 -111131743 + AT_rich Low_complexity Low_complexity 1 21 0 5 900 351 96 0 0 chr5 41405688 41405740 -111131519 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 900 254 346 104 15 chr5 41406662 41406797 -111130462 - MER5A DNA MER1_type -6 183 37 5 900 7682 37 3 3 chr5 41407122 41408229 -111129030 - L1Md_F2 LINE L1 0 6582 5517 5 900 1613 150 136 0 chr5 41408639 41408926 -111128333 + ORR1A3 LTR MaLR 1 326 0 5 900 256 288 14 14 chr5 41409087 41409161 -111128098 - MER63B DNA AcHobo -50 386 313 5 900 903 267 0 25 chr5 41409166 41409366 -111127893 - MTD LTR MaLR -224 195 1 5 900 663 37 0 0 chr5 41409383 41409465 -111127794 + (TC)n Simple_repeat Simple_repeat 1 82 0 5 900 662 285 11 48 chr5 41411434 41411622 -111125637 - B3 SINE B2 -22 194 14 5 900 21 36 0 0 chr5 41411790 41411818 -111125441 + AT_rich Low_complexity Low_complexity 1 28 0 5 900 33 85 0 0 chr5 41411850 41411932 -111125327 + AT_rich Low_complexity Low_complexity 1 82 0 5 900 32307 88 3 7 chr5 41412099 41418087 -111119172 - L1Md_F2 LINE L1 -2 6580 627 6 900 1643 141 13 19 chr5 41418258 41418569 -111118690 + L1_Mur2 LINE L1 4999 5307 -570 6 900 201 290 15 46 chr5 41418579 41418644 -111118615 + MIR SINE MIR 108 170 -92 6 901 408 297 79 26 chr5 41420941 41421131 -111116128 + MTD LTR MaLR 1 200 -219 6 901 500 370 61 25 chr5 41421183 41421460 -111115799 - B4 SINE B4 -3 289 3 6 901 513 263 25 44 chr5 41421475 41421634 -111115625 - MTD LTR MaLR 0 419 264 6 901 231 235 43 29 chr5 41421714 41421784 -111115475 - MTD LTR MaLR -270 109 39 6 901 332 94 19 0 chr5 41423180 41423233 -111114026 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 6 901 1036 283 29 3 chr5 41423284 41423592 -111113667 - Lx6 LINE L1 -46 7414 7099 6 901 263 188 0 0 chr5 41423588 41423636 -111113623 + L1_Mur3 LINE L1 4313 4360 -1520 6 901 322 93 0 0 chr5 41423883 41423926 -111113333 - HY3 scRNA scRNA -53 48 6 6 901 989 74 14 0 chr5 41423926 41424074 -111113185 + L1Md_F2 LINE L1 6432 6581 -1 6 901 264 286 0 24 chr5 41424169 41424270 -111112989 + ID4_ SINE ID 5 100 -52 6 901 1145 352 51 4 chr5 41424242 41424699 -111112560 - MER77 LTR ERVL -148 459 6 6 901 414 340 79 17 chr5 41425176 41425466 -111111793 + Lx8 LINE L1 7115 7422 -51 6 901 273 181 0 46 chr5 41425479 41425566 -111111693 + GA-rich Low_complexity Low_complexity 4 86 0 6 901 849 250 50 0 chr5 41425580 41425760 -111111499 + B3 SINE B2 1 189 -27 6 901 278 162 29 14 chr5 41425801 41425870 -111111389 + Lx8 LINE L1 7399 7468 -5 6 901 605 375 32 32 chr5 41426159 41426437 -111110822 - B4A SINE B4 -10 282 5 6 901 834 325 80 16 chr5 41426782 41427529 -111109730 - L1_Mur3 LINE L1 -1305 4575 3781 6 901 410 319 43 0 chr5 41427731 41427825 -111109434 - B1F1 SINE Alu -51 98 1 6 901 480 325 114 30 chr5 41428210 41428473 -111108786 + MLT1H1-int LTR MaLR 104 388 -999 6 901 604 267 129 12 chr5 41428534 41428697 -111108562 - B3 SINE B2 -2 214 33 6 901 230 379 112 24 chr5 41428714 41429001 -111108258 + MLT1H1-int LTR MaLR 425 736 -651 6 901 833 355 99 0 chr5 41429900 41430283 -111106976 + MLT1H1 LTR MaLR 13 433 -122 6 901 279 341 69 52 chr5 41430299 41430472 -111106787 - MER63A DNA AcHobo -29 181 6 6 901 424 289 79 36 chr5 41430431 41430599 -111106660 + MLT1H1 LTR MaLR 372 552 -3 6 901 397 349 26 19 chr5 41432339 41432494 -111104765 - RSINE1 SINE B4 -1 164 9 6 901 931 84 8 0 chr5 41432538 41432669 -111104590 + L1_Mus2 LINE L1 6435 6566 0 6 901 23 0 0 0 chr5 41434214 41434237 -111103022 + AT_rich Low_complexity Low_complexity 1 23 0 6 901 408 328 50 46 chr5 41434776 41435016 -111102243 + B4A SINE B4 7 247 -45 6 901 399 73 0 0 chr5 41435178 41435233 -111102026 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 901 425 360 17 28 chr5 41436736 41436916 -111100343 + B3 SINE B2 1 178 -38 6 901 899 18 9 0 chr5 41436931 41437040 -111100219 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 6 901 652 249 89 24 chr5 41437113 41437320 -111099939 - ORR1C2 LTR MaLR 0 394 172 6 901 1137 72 0 0 chr5 41437397 41437549 -111099710 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 6 901 449 245 0 10 chr5 41437553 41437652 -111099607 - B3A SINE B2 -99 99 2 6 901 288 0 0 0 chr5 41437882 41437914 -111099345 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 901 980 311 80 39 chr5 41438840 41439204 -111098055 - MTEa LTR MaLR 0 379 1 6 901 306 0 0 0 chr5 41439621 41439655 -111097604 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 901 507 33 0 0 chr5 41439655 41439715 -111097544 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 901 237 65 0 0 chr5 41441334 41441365 -111095894 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 901 5235 199 59 19 chr5 41441370 41442551 -111094708 - Lx5 LINE L1 -24 7026 5798 6 901 1484 131 99 9 chr5 41442548 41442846 -111094413 + Lx5 LINE L1 5460 5796 -1254 6 901 195 69 0 0 chr5 41443999 41444028 -111093231 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 901 259 308 29 9 chr5 41444586 41444691 -111092568 + LTR16B1 LTR ERVL 207 313 -167 6 901 382 278 63 8 chr5 41445620 41445747 -111091512 + MIR SINE MIR 13 146 -116 6 901 483 184 0 0 chr5 41446058 41446199 -111091060 + (TG)n Simple_repeat Simple_repeat 2 142 0 6 901 824 232 87 10 chr5 41446588 41446784 -111090475 - B3 SINE B2 -4 212 2 6 901 970 95 0 48 chr5 41446813 41447001 -111090258 + (CCCCCT)n Simple_repeat Simple_repeat 1 179 0 6 901 477 0 0 0 chr5 41447001 41447054 -111090205 + (TTC)n Simple_repeat Simple_repeat 1 53 0 6 901 597 206 63 8 chr5 41447077 41447204 -111090055 - RLTR25A LTR ERVK -8 1095 962 6 901 771 318 87 61 chr5 41448349 41448511 -111088748 - L1MC1 LINE L1 -11 6322 6163 6 901 2403 47 3 0 chr5 41448511 41448810 -111088449 - L1Md_F2 LINE L1 -12 6570 6271 6 901 771 318 86 60 chr5 41448810 41449451 -111087808 - L1MC1 LINE L1 -171 6162 5498 6 901 31 26 0 0 chr5 41449982 41450020 -111087239 + AT_rich Low_complexity Low_complexity 1 38 0 6 901 236 321 101 36 chr5 41450168 41450307 -111086952 + ORR1C2 LTR MaLR 47 194 -190 6 901 319 89 36 0 chr5 41450307 41450363 -111086896 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 901 360 0 0 0 chr5 41450911 41450951 -111086308 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 901 542 131 24 8 chr5 41452111 41452234 -111085025 + (TA)n Simple_repeat Simple_repeat 1 125 0 6 901 279 0 0 0 chr5 41456212 41456243 -111081016 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 901 365 305 93 89 chr5 41456544 41456857 -111080402 + HAL1 LINE L1 1828 2141 -366 6 901 1034 110 14 0 chr5 41456875 41457021 -111080238 - B1_Mus1 SINE Alu 0 148 1 6 901 290 26 0 25 chr5 41457615 41457655 -111079604 + (TAA)n Simple_repeat Simple_repeat 2 40 0 6 901 24 32 0 0 chr5 41457705 41457736 -111079523 + AT_rich Low_complexity Low_complexity 1 31 0 6 901 238 227 55 33 chr5 41457944 41458035 -111079224 - L1MEg LINE L1 -4731 1353 1261 6 901 2033 170 38 2 chr5 41458315 41458711 -111078548 + Lx LINE L1 6245 6654 0 6 901 922 227 72 0 chr5 41459033 41459227 -111078032 + B3 SINE B2 9 216 0 6 901 372 193 0 12 chr5 41460203 41460287 -111076972 + Lx9 LINE L1 7542 7624 -20 6 901 1182 267 33 137 chr5 41460370 41460800 -111076459 - MTD LTR MaLR -30 389 5 6 901 250 384 50 0 chr5 41461697 41461856 -111075403 + MIR3 SINE MIR 40 206 -2 6 901 531 323 78 31 chr5 41463861 41464245 -111073014 + L1MB1 LINE L1 5609 6010 -179 6 901 297 0 0 0 chr5 41464245 41464278 -111072981 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 901 699 65 0 0 chr5 41464278 41464370 -111072889 + (GA)n Simple_repeat Simple_repeat 2 94 0 6 901 248 302 35 0 chr5 41464616 41464702 -111072557 + L1M2c LINE L1 357 445 -6344 6 901 4199 119 16 2 chr5 41464879 41465520 -111071739 - Lx LINE L1 -2 6652 6003 6 901 267 239 30 0 chr5 41466127 41466194 -111071065 + MTD LTR MaLR 1 69 -352 6 901 486 124 0 0 chr5 41466230 41466319 -111070940 + (GA)n Simple_repeat Simple_repeat 2 90 0 6 901 880 296 81 13 chr5 41466325 41466633 -111070626 + MTD LTR MaLR 50 378 -41 6 901 504 0 0 0 chr5 41466640 41466696 -111070563 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 901 329 284 55 0 chr5 41466754 41466863 -111070396 + PB1D7 SINE Alu 5 119 -1 6 901 1553 98 34 4 chr5 41467007 41467243 -111070016 + L1_Mus1 LINE L1 6323 6565 -2 6 901 1786 340 40 65 chr5 41467255 41468105 -111069154 - MTE-int LTR MaLR -42 1538 710 6 901 907 278 110 35 chr5 41468120 41468437 -111068822 + Lx8 LINE L1 6781 7121 -352 6 901 319 288 107 30 chr5 41468431 41468467 -111068792 + Lx8 LINE L1 7293 7330 -143 6 901 306 0 0 0 chr5 41468467 41468501 -111068758 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 6 901 319 288 107 30 chr5 41468501 41468632 -111068627 + Lx8 LINE L1 7331 7472 -1 6 901 229 334 179 54 chr5 41468686 41469037 -111068222 - MTE-int LTR MaLR -884 696 302 6 901 239 263 0 17 chr5 41469072 41469130 -111068129 - MTE-int LTR MaLR -1372 208 152 6 901 2617 285 81 31 chr5 41469324 41470301 -111066958 + Lx9 LINE L1 6373 7398 -246 6 901 240 134 60 30 chr5 41470324 41470424 -111066835 + (TA)n Simple_repeat Simple_repeat 2 104 0 6 901 471 18 0 0 chr5 41471225 41471281 -111065978 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 901 459 0 0 0 chr5 41471281 41471331 -111065928 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 6 901 666 25 0 0 chr5 41472648 41472728 -111064531 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 901 450 0 0 0 chr5 41473675 41473725 -111063534 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 901 2749 160 8 10 chr5 41475308 41475800 -111061459 + L1_Mur2 LINE L1 5039 5529 -348 6 901 1898 211 11 3 chr5 41475811 41476191 -111061068 + Lx5 LINE L1 6662 7044 -6 6 901 1038 161 131 0 chr5 41477483 41477682 -111059577 + URR1A DNA MER1_type 1 225 -1 6 901 256 372 13 0 chr5 41478213 41478291 -111058968 + ID4 SINE ID 5 83 0 6 901 648 0 0 0 chr5 41479553 41479625 -111057634 + (GA)n Simple_repeat Simple_repeat 1 72 0 6 901 199 259 107 36 chr5 41479862 41479946 -111057313 - MIRb SINE MIR -43 225 136 6 901 408 20 0 0 chr5 41479948 41479997 -111057262 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 901 700 91 18 0 chr5 41480045 41480155 -111057104 + (TTTC)n Simple_repeat Simple_repeat 4 115 0 6 901 295 154 15 15 chr5 41480189 41480255 -111057004 + A-rich Low_complexity Low_complexity 2 67 0 6 901 478 328 46 18 chr5 41480896 41481113 -111056146 + MIRb SINE MIR 5 232 -36 6 901 341 349 16 103 chr5 41481392 41481488 -111055771 + B4A SINE B4 4 83 -209 6 901 269 364 10 20 chr5 41481488 41481589 -111055670 + PB1D7 SINE Alu 1 100 -20 6 901 244 235 20 0 chr5 41481600 41481651 -111055608 + RSINE1 SINE B4 86 137 -28 6 901 357 24 0 0 chr5 41481664 41481706 -111055553 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 901 622 12 24 12 chr5 41481707 41481790 -111055469 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 6 901 326 337 80 47 chr5 41482719 41482993 -111054266 - L1MB8 LINE L1 -127 6051 5769 7 901 23 68 0 0 chr5 41483105 41483149 -111054110 + AT_rich Low_complexity Low_complexity 1 44 0 7 901 26 64 0 0 chr5 41483804 41483851 -111053408 + AT_rich Low_complexity Low_complexity 1 47 0 7 901 465 179 108 25 chr5 41484488 41484608 -111052651 + B3 SINE B2 87 216 0 7 901 215 333 31 134 chr5 41485576 41485770 -111051489 + MIR SINE MIR 40 213 -49 7 901 408 328 15 30 chr5 41485854 41485986 -111051273 - B3 SINE B2 -17 199 70 7 901 707 204 82 23 chr5 41485992 41486163 -111051096 - B2_Mm2 SINE B2 -14 181 1 7 901 283 206 14 14 chr5 41486276 41486350 -111050909 + L1MA8 LINE L1 6026 6099 -192 7 901 576 316 22 92 chr5 41486379 41486606 -111050653 + B3A SINE B2 2 212 -4 7 901 1072 280 117 14 chr5 41486668 41487030 -111050229 + MTC LTR MaLR 18 406 -15 7 901 458 146 10 0 chr5 41487078 41487174 -111050085 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 7 901 27 39 0 19 chr5 41487208 41487226 -111050033 + AT_rich Low_complexity Low_complexity 1 18 0 7 901 3823 47 0 8 chr5 41487226 41487703 -111049556 + L1Md_F2 LINE L1 6107 6579 -3 7 901 27 39 0 19 chr5 41487703 41487736 -111049523 + AT_rich Low_complexity Low_complexity 1 33 0 7 901 1663 255 63 0 chr5 41487882 41488263 -111048996 - MTD LTR MaLR 0 419 15 7 901 408 292 73 105 chr5 41488934 41488969 -111048290 - B3A SINE B2 -1 197 170 7 901 441 0 0 0 chr5 41488969 41489018 -111048241 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 901 270 0 0 0 chr5 41489018 41489047 -111048212 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 901 408 292 73 105 chr5 41489047 41489201 -111048058 - B3A SINE B2 -29 169 14 7 901 4009 46 0 2 chr5 41489305 41489788 -111047471 - LTRIS_Mm LTR ERV1 0 482 1 7 901 437 333 7 7 chr5 41489840 41489982 -111047277 - B4A SINE B4 -19 273 132 7 901 207 0 0 0 chr5 41490038 41490061 -111047198 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 901 537 353 21 52 chr5 41490128 41490361 -111046898 - B4A SINE B4 -66 226 1 7 901 4716 100 1 19 chr5 41490400 41491093 -111046166 - L1_Mus4 LINE L1 0 6636 5956 7 901 5841 60 5 3 chr5 41491089 41491835 -111045424 - L1Md_F2 LINE L1 -10 6572 5825 7 901 8203 77 2 6 chr5 41491835 41492926 -111044333 + L1Md_F2 LINE L1 4797 5883 0 7 901 1287 136 0 0 chr5 41492947 41493153 -111044106 + L1_Mur2 LINE L1 4056 4261 -1616 7 901 2188 107 65 6 chr5 41494198 41494535 -111042724 - IAPEY2_LTR LTR ERVK 0 357 1 7 901 576 321 29 69 chr5 41495947 41496151 -111041108 + B3A SINE B2 3 198 0 7 901 371 316 48 176 chr5 41496480 41496753 -111040506 + MTEa LTR MaLR 1 238 -141 7 901 1134 312 55 44 chr5 41496871 41497418 -111039841 + Lx9 LINE L1 6965 7517 -127 7 901 226 215 25 0 chr5 41497418 41497497 -111039762 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 7 901 46 104 0 13 chr5 41497497 41497730 -111039529 + AT_rich Low_complexity Low_complexity 1 230 0 7 901 1722 98 30 19 chr5 41499356 41499626 -111037633 + L1_Mus3 LINE L1 6363 6635 -3 7 901 259 294 80 27 chr5 41499773 41499885 -111037374 - PB1D7 SINE Alu -2 118 1 7 901 323 275 83 53 chr5 41500219 41500388 -111036871 + MER33 DNA MER1_type 25 198 -126 1 901 228 282 42 0 chr5 41500425 41500496 -111036763 + L2 LINE L2 1855 1928 -1491 2 901 7232 62 14 2 chr5 41501001 41502037 -111035222 - L1_Mus1 LINE L1 -1 6566 5519 3 901 627 38 0 0 chr5 41502041 41502120 -111035139 + L1_Mus1 LINE L1 5425 5503 -380 3 901 284 224 0 0 chr5 41502389 41502447 -111034812 - MLT1A0 LTR MaLR -17 348 291 4 901 3201 287 63 50 chr5 41504580 41505964 -111031295 + Lx9 LINE L1 6121 7504 -140 5 901 402 21 0 0 chr5 41505964 41506011 -111031248 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 901 3201 287 63 50 chr5 41506011 41506127 -111031132 + Lx9 LINE L1 7505 7640 -4 5 901 206 188 46 15 chr5 41506590 41506641 -111030618 + T-rich Low_complexity Low_complexity 19 72 0 7 901 1241 48 196 0 chr5 41506641 41506830 -111030429 - Lx3_Mus LINE L1 0 7009 6784 8 901 206 188 46 15 chr5 41506830 41506843 -111030416 + T-rich Low_complexity Low_complexity 6 18 0 9 901 218 56 28 0 chr5 41506994 41507030 -111030229 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 901 484 301 28 42 chr5 41507218 41507430 -111029829 - MLT1B LTR MaLR -181 209 1 1 901 242 289 78 73 chr5 41507654 41507833 -111029426 - MER53 DNA hAT -7 186 7 1 901 3151 65 7 0 chr5 41507988 41508391 -111028868 - L1_Mus1 LINE L1 0 6567 6162 1 901 4707 63 0 0 chr5 41509751 41510388 -111026871 - L1_Mm LINE L1 -1318 4565 3929 1 901 426 316 111 0 chr5 41510906 41511023 -111026236 + RSINE1 SINE B4 3 132 -33 1 901 453 36 0 0 chr5 41511043 41511098 -111026161 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 901 535 299 78 70 chr5 41512047 41512277 -111024982 + B4 SINE B4 61 292 0 1 901 290 286 34 95 chr5 41513252 41513399 -111023860 - MIR3 SINE MIR -101 167 30 1 901 289 215 147 41 chr5 41513983 41514153 -111023106 + HAL1 LINE L1 101 288 -2219 1 901 1223 257 19 0 chr5 41514556 41514867 -111022392 + Lx7 LINE L1 6740 7056 -640 2 901 301 208 77 29 chr5 41514882 41514986 -111022273 + Lx7 LINE L1 7260 7368 -328 2 901 256 269 0 28 chr5 41515024 41515131 -111022128 + Lx7 LINE L1 7577 7680 -16 2 901 234 0 0 0 chr5 41515924 41515950 -111021309 + (T)n Simple_repeat Simple_repeat 1 26 0 2 901 460 259 197 27 chr5 41516029 41516212 -111021047 + ID_B1 SINE B4 3 216 -8 2 901 216 0 0 0 chr5 41517450 41517474 -111019785 + (T)n Simple_repeat Simple_repeat 1 24 0 2 901 963 251 31 3 chr5 41517480 41517768 -111019491 - L1MD2 LINE L1 -371 5988 5693 2 901 246 128 0 0 chr5 41517772 41517811 -111019448 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 901 339 25 0 0 chr5 41517811 41517851 -111019408 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 901 1288 314 31 8 chr5 41518262 41518741 -111018518 - Lx8 LINE L1 -352 7121 6632 2 901 281 324 113 13 chr5 41518780 41518930 -111018329 + Lx8 LINE L1 6482 6646 -827 2 901 493 250 0 0 chr5 41519017 41519117 -111018142 - B3 SINE B2 -99 117 18 2 901 493 295 132 66 chr5 41519155 41519624 -111017635 - L1MD LINE L1 -2751 3395 2896 3 901 234 278 86 53 chr5 41519626 41519778 -111017481 + L1M2 LINE L1 5651 5807 -484 3 901 3073 272 38 11 chr5 41519781 41520421 -111016838 + L1_Mur3 LINE L1 4686 5351 -529 3 901 1160 91 97 0 chr5 41520421 41520597 -111016662 - B2_Mm2 SINE B2 -1 194 2 3 901 3073 272 38 11 chr5 41520597 41521085 -111016174 + L1_Mur3 LINE L1 5352 5844 -36 3 901 32046 82 19 7 chr5 41521315 41527382 -111009877 - L1Md_F2 LINE L1 -12 6570 446 3 901 3787 126 46 1 chr5 41527582 41528341 -111008918 - L1_Mus4 LINE L1 -665 5971 5191 3 901 230 31 31 0 chr5 41528336 41528368 -111008891 + Lx LINE L1 5990 6022 -632 3 901 8067 179 40 13 chr5 41528483 41530872 -111006387 + Lx5 LINE L1 4170 6638 -412 3 901 3854 145 28 14 chr5 41530872 41531515 -111005744 + Lx LINE L1 6001 6652 -2 3 901 6721 211 24 10 chr5 41531515 41531924 -111005335 + Lx5 LINE L1 6639 7047 -3 3 901 255 122 0 0 chr5 41532239 41532288 -111004971 + (ATG)n Simple_repeat Simple_repeat 3 51 0 3 901 5776 45 0 0 chr5 41532462 41533155 -111004104 - L1Md_T LINE L1 0 6582 5890 4 901 3454 57 11 2 chr5 41533731 41534173 -111003086 - L1_Mus1 LINE L1 -1 6566 6121 4 901 1392 61 61 0 chr5 41534173 41534371 -111002888 + L1_Mus1 LINE L1 5929 6138 -429 4 901 2288 70 54 9 chr5 41534593 41534909 -111002350 - L1_Mus1 LINE L1 0 6567 6238 4 901 432 0 0 0 chr5 41535425 41535473 -111001786 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 901 228 349 24 12 chr5 41535637 41535805 -111001454 - L1MA6 LINE L1 -106 6194 6025 4 901 452 133 19 0 chr5 41536036 41536141 -111001118 + (CAGAGA)n Simple_repeat Simple_repeat 2 108 0 4 901 222 366 0 0 chr5 41536623 41536694 -111000565 + (TG)n Simple_repeat Simple_repeat 1 71 0 4 901 455 220 0 0 chr5 41537090 41537181 -111000078 + MIR SINE MIR 71 161 -101 4 901 38 68 0 0 chr5 41537209 41537282 -110999977 + AT_rich Low_complexity Low_complexity 1 73 0 4 901 2680 43 0 9 chr5 41537282 41537613 -110999646 - L1Md_F3 LINE L1 -15 6569 6242 4 901 465 97 0 0 chr5 41538159 41538231 -110999028 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 901 245 261 72 0 chr5 41538753 41538822 -110998437 + MIRb SINE MIR 65 138 -130 5 901 492 344 43 22 chr5 41538963 41539195 -110998064 + MLT1B LTR MaLR 5 241 -149 5 901 1130 280 80 22 chr5 41540701 41541066 -110996193 + MTD LTR MaLR 18 403 -16 5 901 271 372 11 0 chr5 41541618 41541712 -110995547 + Cheshire DNA MER1_type 167 261 -2159 5 901 327 374 123 0 chr5 41541788 41541951 -110995308 + MER20 DNA MER1_type 1 183 -36 5 901 217 322 49 65 chr5 41542772 41542895 -110994364 + MIR SINE MIR 122 242 -20 5 901 465 34 0 0 chr5 41545491 41545550 -110991709 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 901 603 331 36 32 chr5 41545565 41545846 -110991413 - B4 SINE B4 -8 284 3 5 901 559 58 11 22 chr5 41546041 41546130 -110991129 + (TAGA)n Simple_repeat Simple_repeat 1 88 0 5 901 1195 18 30 0 chr5 41546141 41546307 -110990952 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 5 901 1928 74 7 29 chr5 41546755 41547034 -110990225 + L1_Mus1 LINE L1 6295 6567 0 6 901 236 201 28 11 chr5 41547304 41547365 -110989894 - MLT1H2 LTR MaLR -16 539 434 6 901 431 242 164 61 chr5 41547712 41548042 -110989217 - Lx8 LINE L1 -3 7470 7107 6 901 219 148 18 36 chr5 41549092 41549148 -110988111 + A-rich Low_complexity Low_complexity 2 56 0 6 112 7314 120 17 0 chr5 41549594 41550694 -110986565 + Lx2 LINE L1 5878 6996 -1 6 902 294 299 30 0 chr5 41550814 41550881 -110986378 - Charlie12 DNA MER1_type -2793 80 12 6 902 376 376 114 19 chr5 41551457 41551779 -110985480 + MLT1C LTR MaLR 59 411 -56 6 902 216 384 0 0 chr5 41551779 41551852 -110985407 + ID4 SINE ID 4 76 -7 6 902 24 32 0 0 chr5 41553001 41553032 -110984227 + AT_rich Low_complexity Low_complexity 1 31 0 6 902 599 60 12 0 chr5 41553559 41553643 -110983616 + (CATA)n Simple_repeat Simple_repeat 2 86 0 6 902 1118 92 0 0 chr5 41553648 41553789 -110983470 - B1_Mm SINE Alu -6 141 1 7 902 2963 239 12 7 chr5 41554634 41555325 -110981934 - Lx9 LINE L1 -610 7034 6341 7 902 432 0 0 0 chr5 41555325 41555373 -110981886 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 7 902 283 245 68 87 chr5 41555446 41555652 -110981607 - Lx9 LINE L1 -1537 6107 5906 7 902 367 16 0 32 chr5 41555672 41555735 -110981524 + L1_Mus3 LINE L1 6578 6638 0 7 902 307 244 11 0 chr5 41555790 41555880 -110981379 - Lx9 LINE L1 -55 5792 5702 7 902 427 305 44 15 chr5 41555879 41556082 -110981177 + Lx9 LINE L1 7186 7394 -250 7 902 360 43 0 0 chr5 41556458 41556504 -110980755 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 902 197 268 0 0 chr5 41558005 41558046 -110979213 - MIR SINE MIR -146 116 76 7 902 219 36 0 0 chr5 41558258 41558286 -110978973 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 902 1108 258 36 59 chr5 41558914 41559301 -110977958 + MTE2a LTR MaLR 2 379 0 7 902 443 381 27 9 chr5 41559754 41559979 -110977280 + MLT1D LTR MaLR 277 505 0 7 902 494 334 42 62 chr5 41560026 41560412 -110976847 + MLT1D-int LTR MaLR 183 560 -811 7 902 710 305 69 58 chr5 41560897 41561158 -110976101 - B4A SINE B4 -27 265 2 8 902 1821 174 8 47 chr5 41562206 41562591 -110974668 - Lx LINE L1 -2 6652 6283 8 902 1475 80 9 32 chr5 41562593 41562812 -110974447 - L1_Mus1 LINE L1 0 6567 6354 8 902 3024 95 7 0 chr5 41562812 41563253 -110974006 + L1_Mus1 LINE L1 5911 6354 -213 8 902 1364 161 55 4 chr5 41563238 41563494 -110973765 - Lx LINE L1 -356 6298 6030 8 902 23 54 0 0 chr5 41563711 41563748 -110973511 + AT_rich Low_complexity Low_complexity 1 37 0 8 902 228 327 0 0 chr5 41563856 41563911 -110973348 - ID4_ SINE ID -1 82 28 8 902 3706 82 2 0 chr5 41563912 41564439 -110972820 - L1_Mm LINE L1 -599 5284 4757 8 902 4043 88 5 7 chr5 41564440 41565043 -110972216 + L1_Mm LINE L1 3557 4158 -1725 8 902 527 117 0 18 chr5 41565131 41565244 -110972015 + (TCTG)n Simple_repeat Simple_repeat 2 112 0 8 902 270 0 0 0 chr5 41566498 41566528 -110970731 + (GA)n Simple_repeat Simple_repeat 2 31 0 8 902 233 393 69 35 chr5 41566836 41566952 -110970307 + MLT1C LTR MaLR 300 419 -48 8 902 325 319 118 0 chr5 41567376 41567520 -110969739 + MIRb SINE MIR 60 220 -48 9 902 1341 271 80 13 chr5 41569121 41569584 -110967675 + RMER5 LTR ERV1 41 534 0 9 902 698 320 110 42 chr5 41569613 41570021 -110967238 + MLT2B1 LTR ERVL 1 436 -84 9 902 426 132 7 65 chr5 41570021 41570175 -110967084 + (TCTG)n Simple_repeat Simple_repeat 4 148 0 9 902 388 121 106 0 chr5 41570175 41570241 -110967018 - HAL1-3A_ME LINE L1 -806 2052 1980 9 902 213 216 0 0 chr5 41570379 41570430 -110966829 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 9 902 495 0 0 0 chr5 41571175 41571230 -110966029 + (T)n Simple_repeat Simple_repeat 1 55 0 9 902 464 300 8 8 chr5 41572026 41572147 -110965112 + ORR1E LTR MaLR 11 131 -228 9 902 332 302 8 45 chr5 41572157 41572289 -110964970 + ORR1E LTR MaLR 253 379 0 9 902 291 28 0 0 chr5 41572368 41572404 -110964855 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 902 495 0 0 0 chr5 41572404 41572458 -110964801 + (GA)n Simple_repeat Simple_repeat 2 56 0 9 902 870 183 168 0 chr5 41572848 41573039 -110964220 + URR1A DNA MER1_type 3 225 -1 1 902 646 300 58 8 chr5 41573302 41573561 -110963698 + Lx8 LINE L1 6828 7099 -374 1 902 1047 323 27 27 chr5 41573960 41574109 -110963150 - MLT1A0-int LTR MaLR -20 1715 1567 1 902 3414 49 2 5 chr5 41574109 41574536 -110962723 + L1Md_F2 LINE L1 6143 6568 -14 1 902 1047 323 27 27 chr5 41574536 41574758 -110962501 - MLT1A0-int LTR MaLR -169 1566 1344 1 902 923 354 101 29 chr5 41575222 41575749 -110961510 - MLT1A0-int LTR MaLR -1167 568 4 1 902 711 317 114 9 chr5 41575759 41576084 -110961175 - MLT1A0 LTR MaLR -4 361 3 1 902 21 0 0 0 chr5 41576235 41576256 -110961003 + AT_rich Low_complexity Low_complexity 1 21 0 1 902 501 274 55 73 chr5 41577961 41578095 -110959164 + RSINE1 SINE B4 4 139 -26 1 902 288 70 0 0 chr5 41578095 41578138 -110959121 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 902 501 274 55 73 chr5 41578138 41578168 -110959091 + RSINE1 SINE B4 140 165 0 1 902 225 250 0 19 chr5 41580225 41580278 -110956981 + CT-rich Low_complexity Low_complexity 1 52 0 1 902 198 71 0 0 chr5 41580279 41580307 -110956952 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 902 324 70 0 0 chr5 41581608 41581651 -110955608 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 902 438 264 0 0 chr5 41581725 41581835 -110955424 + Lx9 LINE L1 6639 6748 -896 1 902 1408 224 88 22 chr5 41581836 41582155 -110955104 + ORR1B2 LTR MaLR 20 359 -8 1 902 329 382 43 71 chr5 41583043 41583325 -110953934 + B4 SINE B4 3 276 -16 1 902 200 250 0 32 chr5 41583535 41583597 -110953662 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 1 902 27 0 0 0 chr5 41583633 41583660 -110953599 + AT_rich Low_complexity Low_complexity 1 27 0 1 902 429 364 21 7 chr5 41583971 41584112 -110953147 + RSINE1 SINE B4 1 143 -22 1 902 429 20 0 0 chr5 41584127 41584177 -110953082 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 902 198 0 0 0 chr5 41584178 41584200 -110953059 + (CCA)n Simple_repeat Simple_repeat 1 22 0 1 902 21 0 0 0 chr5 41585032 41585053 -110952206 + AT_rich Low_complexity Low_complexity 1 21 0 1 902 748 243 44 31 chr5 41585197 41585422 -110951837 - MER121 Unknown Unknown -173 239 12 1 902 249 269 21 0 chr5 41585465 41585558 -110951701 + A-rich Low_complexity Low_complexity 3 97 0 1 902 235 244 66 55 chr5 41586017 41586108 -110951151 + MLT1B LTR MaLR 83 174 -216 1 902 318 335 70 70 chr5 41586114 41586342 -110950917 - MLT1F2 LTR MaLR -323 237 10 1 902 217 169 34 0 chr5 41586482 41586541 -110950718 + CT-rich Low_complexity Low_complexity 1 61 0 1 902 2148 163 29 3 chr5 41587290 41587666 -110949593 + ORR1B1 LTR MaLR 1 386 -8 1 902 274 358 118 23 chr5 41588119 41588382 -110948877 + MLT2F LTR ERVL 1 288 -375 1 902 277 359 51 29 chr5 41588360 41588535 -110948724 + MLT2F LTR ERVL 480 658 -5 1 902 224 261 209 48 chr5 41589256 41589380 -110947879 + MIRb SINE MIR 43 187 -81 1 902 30 27 0 0 chr5 41589746 41589783 -110947476 + AT_rich Low_complexity Low_complexity 1 37 0 1 902 524 202 132 20 chr5 41589827 41590024 -110947235 - Lx9 LINE L1 -22 7622 7404 1 902 704 138 8 0 chr5 41590733 41590863 -110946396 + (GA)n Simple_repeat Simple_repeat 2 132 0 1 902 444 307 163 41 chr5 41592186 41592366 -110944893 - MLT1C LTR MaLR -25 442 250 1 902 2773 122 42 21 chr5 41592366 41592842 -110944417 - Lx LINE L1 -4 6650 6165 1 902 444 307 163 41 chr5 41592842 41593048 -110944211 - MLT1C LTR MaLR -218 249 9 1 902 280 324 90 38 chr5 41593268 41593480 -110943779 + Charlie1 DNA MER1_type 145 367 -2414 1 902 365 221 29 78 chr5 41593543 41593646 -110943613 + B1F2 SINE Alu 44 141 -8 1 902 418 321 72 72 chr5 41593728 41594020 -110943239 + Charlie1 DNA MER1_type 587 878 -1903 1 902 565 148 25 115 chr5 41594102 41594224 -110943035 - B1F SINE Alu -25 124 14 1 902 429 291 160 11 chr5 41594237 41594418 -110942841 + Charlie1 DNA MER1_type 934 1141 -1640 1 902 669 253 56 59 chr5 41594616 41594939 -110942320 - Lx9 LINE L1 0 7644 7323 1 902 334 390 64 17 chr5 41596675 41596847 -110940412 - MLT1J LTR MaLR -98 414 235 1 902 405 146 135 0 chr5 41596875 41596904 -110940355 - ORR1C2 LTR MaLR -13 371 331 1 902 893 35 0 9 chr5 41596904 41597018 -110940241 + (TTC)n Simple_repeat Simple_repeat 2 114 0 1 902 405 146 135 0 chr5 41597018 41597077 -110940182 - ORR1C2 LTR MaLR -54 330 272 1 902 655 54 11 0 chr5 41597097 41597189 -110940070 - L1_Mus1 LINE L1 0 6567 6475 1 902 233 257 135 0 chr5 41597200 41597274 -110939985 - MLT1J LTR MaLR -372 140 57 1 902 188 387 0 48 chr5 41597842 41597967 -110939292 + MIRm SINE MIR 65 183 -93 1 902 17406 124 8 2 chr5 41598110 41601851 -110935408 - L1_Mus3 LINE L1 -10 6628 2864 1 902 3558 98 0 50 chr5 41601847 41601940 -110935319 - L1VL4 LINE L1 -2101 1458 1370 1 902 2556 55 61 3 chr5 41601940 41602267 -110934992 + ORR1A1 LTR MaLR 1 346 0 1 902 3558 98 0 50 chr5 41602267 41602715 -110934544 - L1VL4 LINE L1 -2190 1369 947 1 902 320 0 0 24 chr5 41602715 41602756 -110934503 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 902 3558 194 14 56 chr5 41602756 41603524 -110933735 - L1VL4 LINE L1 -5356 946 193 1 902 2037 147 9 9 chr5 41603538 41603867 -110933392 + ORR1A4 LTR MaLR 1 329 0 1 902 360 0 0 0 chr5 41603935 41603975 -110933284 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 902 270 0 0 0 chr5 41604469 41604499 -110932760 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 902 684 353 5 0 chr5 41604499 41604689 -110932570 - ID_B1 SINE B4 -8 216 26 1 902 2894 61 2 32 chr5 41604971 41605048 -110932211 - MTA_Mm LTR MaLR 0 396 326 1 902 3117 28 12 82 chr5 41605048 41605474 -110931785 + MTA_Mm LTR MaLR 1 396 0 1 902 7525 75 19 70 chr5 41605474 41606631 -110930628 + MTA_Mm-int LTR MaLR 1 1098 0 1 902 3032 45 59 0 chr5 41606631 41607005 -110930254 + MTA_Mm LTR MaLR 1 396 0 1 902 2894 61 2 32 chr5 41607005 41607333 -110929926 - MTA_Mm LTR MaLR -71 325 3 1 902 8355 134 28 13 chr5 41609014 41610622 -110926637 - Lx2 LINE L1 -1 6996 5398 1 902 2910 106 56 17 chr5 41610622 41611084 -110926175 - Lx3_Mus LINE L1 -8 7001 6522 1 902 3545 158 11 82 chr5 41611084 41611188 -110926071 - Lx2 LINE L1 -486 5397 5300 1 902 1675 125 66 0 chr5 41611188 41611460 -110925799 - L1_Mus4 LINE L1 -7 6629 6340 1 902 3545 158 11 82 chr5 41611460 41611584 -110925675 - Lx2 LINE L1 -584 5299 5178 1 902 4691 176 33 8 chr5 41611580 41612493 -110924766 + Lx2 LINE L1 4234 5169 -708 1 902 591 259 23 0 chr5 41613062 41613193 -110924066 - RSINE1 SINE B4 -21 144 11 1 902 1286 331 151 25 chr5 41613605 41613715 -110923544 + Lx9 LINE L1 6050 6178 -1295 1 902 405 0 0 0 chr5 41613715 41613760 -110923499 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 902 2068 313 100 18 chr5 41613760 41614774 -110922485 + Lx9 LINE L1 6179 7441 -203 1 902 200 160 39 39 chr5 41614789 41614841 -110922418 + (TCTCTG)n Simple_repeat Simple_repeat 6 57 0 1 902 24 0 0 0 chr5 41614856 41614880 -110922379 + AT_rich Low_complexity Low_complexity 1 24 0 1 902 1136 259 50 40 chr5 41615124 41615426 -110921833 - ORR1C2-int LTR MaLR -104 1405 1101 1 902 27 0 0 0 chr5 41615678 41615705 -110921554 + GC_rich Low_complexity Low_complexity 1 27 0 1 902 1719 237 79 23 chr5 41615795 41616274 -110920985 - RMER20A LTR ERVK 0 516 11 1 902 239 283 20 80 chr5 41616378 41616478 -110920781 - RMER10A LTR ERVL -331 111 18 1 902 862 290 32 72 chr5 41616621 41616870 -110920389 - ORR1C2-int LTR MaLR -426 1083 845 1 902 4094 65 2 0 chr5 41616870 41617397 -110919862 - L1_Mm LINE L1 -580 5303 4776 1 902 407 95 0 26 chr5 41617397 41617503 -110919756 + L1Md_F3 LINE L1 6511 6584 0 1 902 468 222 60 52 chr5 41617503 41617683 -110919576 - ORR1C2-int LTR MaLR -647 723 531 1 902 1224 179 122 0 chr5 41617669 41617915 -110919344 - ORR1C2 LTR MaLR -108 276 1 1 902 21 0 0 0 chr5 41618165 41618186 -110919073 + AT_rich Low_complexity Low_complexity 1 21 0 1 902 7009 165 44 68 chr5 41618238 41620418 -110916841 - Lx2B LINE L1 0 7000 4863 1 902 646 267 41 41 chr5 41620847 41621042 -110916217 + B3A SINE B2 2 196 -2 1 902 1080 81 0 0 chr5 41621043 41621191 -110916068 + B1_Mus1 SINE Alu 1 148 0 1 902 237 98 0 0 chr5 41621191 41621232 -110916027 + (A)n Simple_repeat Simple_repeat 1 41 0 1 902 280 300 25 0 chr5 41621443 41621523 -110915736 + MTC LTR MaLR 8 89 -332 1 902 22155 98 19 25 chr5 41621846 41626014 -110911245 + L1Md_F2 LINE L1 214 4356 -1527 1 902 7129 66 14 13 chr5 41626019 41626961 -110910298 + L1Md_F2 LINE L1 5640 6582 0 1 902 6663 80 95 0 chr5 41626989 41627940 -110909319 + Lx3_Mus LINE L1 5969 7009 0 1 902 184 291 12 60 chr5 41628737 41628821 -110908438 - L3 LINE CR1 -3 4486 4407 1 902 1022 0 8 0 chr5 41629205 41629323 -110907936 + (GA)n Simple_repeat Simple_repeat 1 119 0 1 902 427 220 106 67 chr5 41629349 41629529 -110907730 - MT2A LTR ERVL -324 209 23 1 902 327 288 92 39 chr5 41629423 41629553 -110907706 - MTE2a LTR MaLR -242 137 1 1 902 26 0 0 0 chr5 41630680 41630706 -110906553 + AT_rich Low_complexity Low_complexity 1 26 0 1 902 822 301 118 22 chr5 41631093 41631406 -110905853 + MER2 DNA MER2_type 2 344 -1 1 902 383 0 21 0 chr5 41631958 41632005 -110905254 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 902 5201 88 1 7 chr5 41632293 41633021 -110904238 + L1_Mus2 LINE L1 5843 6566 0 1 902 281 270 0 0 chr5 41633197 41633271 -110903988 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 902 285 364 35 14 chr5 41635227 41635369 -110901890 - B1F SINE Alu 0 149 5 1 902 471 35 0 0 chr5 41635564 41635621 -110901638 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 902 27 0 0 0 chr5 41635734 41635761 -110901498 + AT_rich Low_complexity Low_complexity 1 27 0 1 902 1737 124 44 7 chr5 41637322 41637597 -110899662 + Lx3A LINE L1 6681 6965 -16 1 902 257 0 0 29 chr5 41637598 41637632 -110899627 + (TAAAA)n Simple_repeat Simple_repeat 1 33 0 1 902 272 203 13 115 chr5 41638084 41638162 -110899097 - MTEb LTR MaLR -309 70 1 1 902 207 139 0 0 chr5 41638351 41638387 -110898872 + (T)n Simple_repeat Simple_repeat 1 36 0 1 902 254 360 26 26 chr5 41638701 41638815 -110898444 + MER5A DNA MER1_type 53 166 -23 1 902 2725 43 9 6 chr5 41638892 41639241 -110898018 + L1Md_F3 LINE L1 6235 6584 0 1 902 4081 53 0 6 chr5 41642888 41643396 -110893863 - L1Md_F2 LINE L1 -13 6569 6065 1 902 472 250 127 15 chr5 41643656 41643790 -110893469 + Lx8 LINE L1 7171 7319 -154 1 902 2021 235 10 5 chr5 41644404 41644815 -110892444 + MTD LTR MaLR 1 413 -6 1 902 231 326 48 120 chr5 41646029 41646196 -110891063 + MLT1H2 LTR MaLR 322 476 -13 1 902 27 62 0 0 chr5 41647245 41647293 -110889966 + AT_rich Low_complexity Low_complexity 1 48 0 1 902 360 272 21 21 chr5 41648331 41648425 -110888834 + RSINE1 SINE B4 2 95 -70 1 902 412 381 51 5 chr5 41648437 41648632 -110888627 + MIR SINE MIR 38 241 -21 1 902 181 0 69 0 chr5 41648635 41648664 -110888595 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 902 235 350 68 8 chr5 41648930 41649048 -110888211 - MIR SINE MIR -20 242 118 1 902 211 391 0 11 chr5 41649137 41649230 -110888029 + MIR SINE MIR 31 122 -140 2 902 183 42 0 0 chr5 41649735 41649759 -110887500 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 902 1150 80 0 28 chr5 41649994 41650212 -110887047 - L1Md_F2 LINE L1 0 6582 6407 2 902 795 93 0 0 chr5 41650320 41650438 -110886821 + (GTTTG)n Simple_repeat Simple_repeat 2 119 0 2 902 1000 82 37 0 chr5 41650438 41650572 -110886687 - B1_Mus1 SINE Alu -9 139 1 2 902 950 302 66 9 chr5 41650992 41651433 -110885826 + MLT1C LTR MaLR 2 467 0 2 902 343 296 92 65 chr5 41654010 41654194 -110883065 + Lx8 LINE L1 6933 7121 -352 2 902 989 49 0 7 chr5 41654610 41654753 -110882506 + L1_Mus4 LINE L1 6483 6624 -12 2 902 394 328 65 36 chr5 41655704 41655982 -110881277 - MLT1D LTR MaLR -219 286 1 2 902 212 326 41 21 chr5 41656542 41656639 -110880620 - MIR3 SINE MIR -11 197 99 2 902 181 263 204 31 chr5 41656721 41656819 -110880440 + MIRc SINE MIR 46 160 -108 2 902 375 154 0 0 chr5 41658463 41658528 -110878731 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 902 318 148 0 0 chr5 41659506 41659560 -110877699 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 2 902 628 324 138 11 chr5 41659572 41660124 -110877135 + L1M3 LINE L1 4382 5003 -1137 2 902 12471 186 25 15 chr5 41660150 41663778 -110873481 - Lx5 LINE L1 -5 7045 3380 2 902 386 319 86 59 chr5 41665148 41665661 -110871598 - L1MB8 LINE L1 -31 6153 5624 2 902 7988 59 2 0 chr5 41666043 41667037 -110870222 - L1Md_F2 LINE L1 0 6582 5587 2 902 5678 67 5 1 chr5 41667040 41667814 -110869445 + L1Md_F2 LINE L1 4799 5575 -308 2 902 384 152 0 0 chr5 41667950 41668016 -110869243 + (TG)n Simple_repeat Simple_repeat 1 66 0 2 902 230 288 0 15 chr5 41668045 41668112 -110869147 - RSINE1 SINE B4 -21 144 79 2 902 248 366 84 18 chr5 41668135 41668419 -110868840 - Lx8 LINE L1 -2 7471 7169 2 902 456 67 0 0 chr5 41668450 41668510 -110868749 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 2 902 6209 59 0 1 chr5 41668521 41669288 -110867971 - L1_Mus1 LINE L1 0 6567 5802 2 902 288 320 168 0 chr5 41671420 41671545 -110865714 + Tigger5 DNA MER2_type 1 146 -2260 2 902 412 389 71 58 chr5 41671638 41671878 -110865381 + B4A SINE B4 50 292 0 2 902 190 29 28 56 chr5 41672753 41672789 -110864470 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 2 902 398 258 17 0 chr5 41673792 41673912 -110863347 + L1MB8 LINE L1 6046 6167 -11 2 902 558 303 55 9 chr5 41674118 41674338 -110862921 - L1M2 LINE L1 -1205 4938 4709 2 902 538 286 87 8 chr5 41674346 41674600 -110862659 - L1M2 LINE L1 -1533 4607 4334 2 902 313 319 0 0 chr5 41674636 41674749 -110862510 - L1M2 LINE L1 -2397 3743 3631 2 902 1797 285 29 10 chr5 41674789 41675367 -110861892 - Lx8 LINE L1 -596 6877 6289 2 902 1358 189 126 7 chr5 41675367 41675644 -110861615 + ORR1C1 LTR MaLR 1 310 -68 2 902 1272 122 62 12 chr5 41675651 41675891 -110861368 - Lx2A1 LINE L1 -771 6237 5986 2 902 211 325 25 25 chr5 41675949 41676028 -110861231 - ID4 SINE ID -2 81 3 2 902 6842 73 8 9 chr5 41676855 41678199 -110859060 - L1Md_F2 LINE L1 0 6582 5243 2 902 257 68 0 22 chr5 41678221 41678266 -110858993 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2 112 31036 74 41 2 chr5 41678269 41684218 -110853041 - L1Md_F3 LINE L1 -15 6569 373 2 903 189 74 0 0 chr5 41684271 41684298 -110852961 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 903 285 29 0 0 chr5 41684953 41684987 -110852272 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 903 528 140 28 0 chr5 41684989 41685096 -110852163 + GA-rich Low_complexity Low_complexity 2 111 0 2 903 673 266 195 27 chr5 41685919 41686251 -110851008 - RMER5 LTR ERV1 -114 420 33 2 903 715 297 50 1 chr5 41686963 41687248 -110850011 + Lx9 LINE L1 6891 7332 -312 2 903 432 0 0 0 chr5 41687366 41687414 -110849845 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 903 22 80 0 0 chr5 41688694 41688744 -110848515 + AT_rich Low_complexity Low_complexity 1 50 0 2 903 444 191 0 0 chr5 41692449 41692538 -110844721 + (TA)n Simple_repeat Simple_repeat 1 89 0 2 903 239 235 0 34 chr5 41693183 41693271 -110843988 + (CATATA)n Simple_repeat Simple_repeat 3 87 0 2 903 259 396 49 19 chr5 41694283 41694445 -110842814 + MIR3 SINE MIR 1 167 -41 2 903 189 0 0 0 chr5 41694824 41694845 -110842414 + (A)n Simple_repeat Simple_repeat 1 21 0 2 903 4004 126 17 0 chr5 41694965 41695567 -110841692 + Lx2 LINE L1 6386 6997 0 2 903 1281 63 6 0 chr5 41696737 41696911 -110840348 - L1Md_F2 LINE L1 -12 6570 6396 2 903 455 310 80 10 chr5 41697075 41697274 -110839985 - Tigger7 DNA MER2_type -4 2487 2275 2 903 977 271 24 47 chr5 41697279 41697577 -110839682 + B4A SINE B4 2 292 0 2 903 200 275 29 0 chr5 41697631 41697700 -110839559 + CT-rich Low_complexity Low_complexity 2 72 0 2 903 648 288 163 13 chr5 41697702 41698038 -110839221 - Tigger7 DNA MER2_type -2080 411 30 2 903 256 324 0 0 chr5 41698170 41698275 -110838984 + L1M5 LINE L1 3741 3845 -2301 2 903 306 348 128 21 chr5 41698296 41698584 -110838675 + L1M2 LINE L1 4807 5125 -1018 2 903 396 135 0 0 chr5 41698584 41698658 -110838601 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 903 267 263 107 47 chr5 41698711 41698889 -110838370 + B3A SINE B2 6 192 -3 2 903 405 0 0 0 chr5 41702190 41702235 -110835024 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 903 226 345 67 7 chr5 41702260 41702409 -110834850 - LTR33A LTR ERVL -15 505 348 2 903 1690 214 9 35 chr5 41704149 41704196 -110833063 - RMER15 LTR ERVL 0 575 537 2 903 1851 123 32 87 chr5 41704196 41704542 -110832717 + ORR1A4 LTR MaLR 3 329 0 2 903 1690 214 9 35 chr5 41704542 41704842 -110832417 - RMER15 LTR ERVL -39 536 237 2 903 263 335 173 29 chr5 41705184 41705630 -110831629 + L2a LINE L2 2917 3426 0 2 903 881 288 68 70 chr5 41707133 41707302 -110829957 - MTEa LTR MaLR -10 369 191 2 903 6134 58 1 1 chr5 41707302 41708061 -110829198 + L1_Mus1 LINE L1 5807 6565 -2 2 903 881 288 68 70 chr5 41708061 41708261 -110828998 - MTEa LTR MaLR -189 190 1 2 903 948 94 0 0 chr5 41708363 41708522 -110828737 + (TC)n Simple_repeat Simple_repeat 1 159 0 2 903 332 316 34 0 chr5 41709146 41709263 -110827996 + GA-rich Low_complexity Low_complexity 5 125 0 2 903 7501 65 2 6 chr5 41709360 41710403 -110826856 - L1_Mm LINE L1 -612 5271 4233 2 903 1101 75 0 12 chr5 41710396 41710557 -110826702 + L1_Mm LINE L1 5264 5422 -461 2 903 226 394 10 0 chr5 41710890 41710989 -110826270 + MIR SINE MIR 11 110 -152 2 903 213 167 24 0 chr5 41711134 41711176 -110826083 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 2 903 445 270 32 98 chr5 41711204 41711413 -110825846 - B4A SINE B4 -4 288 83 2 903 1765 169 42 96 chr5 41711500 41711905 -110825354 + ORR1C2 LTR MaLR 1 383 -1 2 903 187 330 68 25 chr5 41712523 41712641 -110824618 - L2c LINE L2 -267 3120 2998 2 903 992 72 7 0 chr5 41713327 41713465 -110823794 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 2 903 263 223 0 46 chr5 41713508 41713616 -110823643 - Lx7 LINE L1 -15 7681 7579 2 903 183 167 0 0 chr5 41713625 41713667 -110823592 + CT-rich Low_complexity Low_complexity 1 42 0 2 903 429 95 0 0 chr5 41715082 41715145 -110822114 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 903 441 0 0 0 chr5 41715145 41715193 -110822066 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 903 616 221 0 9 chr5 41715242 41715356 -110821903 - RSINE1 SINE B4 -50 115 3 2 903 306 0 0 0 chr5 41715378 41715412 -110821847 + (A)n Simple_repeat Simple_repeat 1 34 0 2 903 22 35 0 0 chr5 41715801 41715830 -110821429 + AT_rich Low_complexity Low_complexity 1 29 0 2 903 880 329 44 37 chr5 41716042 41716610 -110820649 + L1MB7 LINE L1 5608 6179 -5 2 903 253 299 102 8 chr5 41718185 41718303 -110818956 - MIR SINE MIR -66 196 68 2 903 284 0 0 89 chr5 41719331 41719387 -110817872 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 2 903 385 354 50 103 chr5 41719404 41719763 -110817496 + ORR1E LTR MaLR 9 348 -11 2 903 445 71 29 0 chr5 41719953 41720023 -110817236 + (GA)n Simple_repeat Simple_repeat 2 73 0 2 903 856 121 25 0 chr5 41720008 41720165 -110817094 + (GAAAA)n Simple_repeat Simple_repeat 5 165 0 2 903 404 308 45 48 chr5 41720567 41720917 -110816342 + MTEb LTR MaLR 24 363 -7 2 903 302 295 56 75 chr5 41721116 41721277 -110815982 + LTR79 LTR ERVL 370 527 0 2 903 301 357 78 62 chr5 41721768 41722088 -110815171 - L2a LINE L2 0 3426 3102 2 903 831 266 50 5 chr5 41722224 41722424 -110814835 + B3 SINE B2 2 210 -6 2 903 329 316 88 48 chr5 41722454 41722583 -110814676 - MLT1A LTR MaLR -56 352 225 2 903 226 311 39 10 chr5 41722916 41723020 -110814239 + Lx8 LINE L1 6837 6943 -530 2 903 913 289 93 46 chr5 41723227 41723263 -110813996 + Lx8 LINE L1 6921 6952 -521 2 903 230 0 0 32 chr5 41723263 41723294 -110813965 + (CCA)n Simple_repeat Simple_repeat 3 32 0 2 903 913 289 93 46 chr5 41723294 41723664 -110813595 + Lx8 LINE L1 6953 7343 -130 2 903 379 0 0 38 chr5 41723664 41723717 -110813542 + (TAA)n Simple_repeat Simple_repeat 1 51 0 2 903 913 289 93 46 chr5 41723717 41723748 -110813511 + Lx8 LINE L1 7344 7379 -94 2 903 519 244 16 0 chr5 41724037 41724160 -110813099 + MLT1A0 LTR MaLR 238 362 -3 2 903 498 294 89 156 chr5 41724160 41724551 -110812708 + MTE2a LTR MaLR 1 365 -14 2 903 1017 124 0 0 chr5 41724734 41724879 -110812380 - ORR1A2 LTR MaLR -93 234 90 2 903 740 89 0 0 chr5 41724877 41724978 -110812281 + ORR1A3 LTR MaLR 218 318 -8 2 903 6917 62 4 1 chr5 41725391 41726325 -110810934 + L1_Mm LINE L1 4432 5368 -515 2 903 221 386 82 38 chr5 41726654 41726972 -110810287 + L2a LINE L2 2924 3255 -171 2 903 429 20 0 0 chr5 41727075 41727125 -110810134 + (GAAAA)n Simple_repeat Simple_repeat 4 53 0 2 903 802 172 0 16 chr5 41727132 41727315 -110809944 + G-rich Low_complexity Low_complexity 1 180 0 2 903 969 163 0 0 chr5 41727272 41727450 -110809809 + GA-rich Low_complexity Low_complexity 3 180 0 2 903 2748 212 35 10 chr5 41727477 41728072 -110809187 - RLTR17 LTR ERVK -82 610 1 3 903 304 278 0 14 chr5 41728177 41728250 -110809009 - PB1D10 SINE Alu -37 80 9 3 903 585 264 85 6 chr5 41728612 41728776 -110808483 - MER5A DNA MER1_type 0 189 13 3 903 540 174 0 0 chr5 41729093 41729214 -110808045 + (TG)n Simple_repeat Simple_repeat 1 121 0 3 903 329 293 199 114 chr5 41729244 41729506 -110807753 - B4A SINE B4 0 292 9 3 903 765 33 0 0 chr5 41730601 41730693 -110806566 + (TC)n Simple_repeat Simple_repeat 1 92 0 3 903 253 375 12 62 chr5 41731074 41731236 -110806023 - MIR3 SINE MIR -23 185 32 3 903 915 390 44 7 chr5 41731261 41731718 -110805541 - MER74A LTR ERVL -6 552 79 3 903 285 29 0 0 chr5 41734316 41734350 -110802909 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 3 903 2166 269 9 20 chr5 41734400 41734953 -110802306 - Lx5 LINE L1 -39 7011 6465 3 903 1191 260 95 69 chr5 41734953 41735653 -110801606 + RMER6C LTR ERVK 1 720 0 3 903 1235 268 13 3 chr5 41735653 41735960 -110801299 - Lx5 LINE L1 -580 6470 6161 3 903 650 295 53 93 chr5 41736725 41737121 -110800138 + MLT1B LTR MaLR 11 390 0 3 903 842 308 72 36 chr5 41737259 41737592 -110799667 - MLT1A0 LTR MaLR -10 355 11 3 903 800 303 97 36 chr5 41737720 41738028 -110799231 - MER2 DNA MER2_type -6 339 13 3 903 211 250 0 0 chr5 41738068 41738112 -110799147 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 903 559 265 12 37 chr5 41740215 41740376 -110796883 - RSINE1 SINE B4 -6 159 3 3 903 190 184 26 0 chr5 41740490 41740528 -110796731 - MIRc SINE MIR -149 119 81 3 903 517 315 106 55 chr5 41740799 41741054 -110796205 - B4 SINE B4 -23 269 2 3 903 330 286 0 0 chr5 41741103 41741180 -110796079 - ID4_ SINE ID -3 80 4 3 903 1877 308 77 19 chr5 41741182 41742109 -110795150 + Lx8 LINE L1 6493 7472 -1 3 903 212 273 0 43 chr5 41742548 41742581 -110794678 + polypurine Low_complexity Low_complexity 4 34 0 3 903 372 221 0 0 chr5 41742581 41742649 -110794610 + ID4_ SINE ID 5 72 -11 3 903 212 273 0 43 chr5 41742649 41742684 -110794575 + polypurine Low_complexity Low_complexity 35 69 0 3 903 290 152 17 0 chr5 41742741 41742800 -110794459 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 903 893 269 154 29 chr5 41743355 41743876 -110793383 + L1_Rod LINE L1 5122 5707 -140 3 903 703 265 63 24 chr5 41743888 41744093 -110793166 + B3 SINE B2 2 214 -2 3 903 1759 152 0 6 chr5 41744094 41744413 -110792846 - L1_Mur2 LINE L1 -589 5288 4972 3 903 5086 132 44 13 chr5 41744413 41745278 -110791981 - RMER17B LTR ERVK 0 958 67 3 903 33164 80 16 6 chr5 41745312 41751388 -110785871 - L1Md_F3 LINE L1 0 6584 409 3 903 1368 48 0 0 chr5 41751389 41751556 -110785703 - L1_Mus1 LINE L1 -9 6558 6392 3 903 1210 87 5 11 chr5 41751556 41751741 -110785518 + L1_Mm LINE L1 4807 4990 -893 3 903 407 139 56 0 chr5 41751742 41751814 -110785445 - RMER17B LTR ERVK -882 76 1 3 903 602 148 19 0 chr5 41751814 41751922 -110785337 - L1_Mur2 LINE L1 -900 4977 4868 3 903 6208 166 71 8 chr5 41751920 41753545 -110783714 + Lx4B LINE L1 5285 7040 -18 3 903 324 0 0 0 chr5 41753545 41753581 -110783678 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 3 903 2303 327 69 27 chr5 41753903 41755251 -110782008 + Lx8 LINE L1 6068 7471 -2 3 903 2313 212 13 52 chr5 41756057 41756580 -110780679 - RLTR18B LTR ERVK -9 503 1 3 903 1333 62 78 0 chr5 41757685 41757864 -110779395 + L1_Mus1 LINE L1 6375 6567 0 3 903 682 254 167 55 chr5 41758076 41758405 -110778854 + RMER13A LTR ERVK 31 396 -464 3 903 311 359 86 31 chr5 41758443 41758699 -110778560 + RMER13A LTR ERVK 545 814 -94 3 903 2734 191 38 18 chr5 41759803 41760359 -110776900 + Lx5 LINE L1 6479 7045 -5 3 903 603 54 33 0 chr5 41761942 41762034 -110775225 + (TC)n Simple_repeat Simple_repeat 1 95 0 3 903 452 289 12 48 chr5 41762481 41762648 -110774611 + Lx8 LINE L1 7172 7332 -141 3 903 27 49 0 0 chr5 41764312 41764353 -110772906 + AT_rich Low_complexity Low_complexity 1 41 0 3 903 1198 182 9 1 chr5 41764878 41765232 -110772027 + Lx5 LINE L1 895 1315 -5771 3 903 13587 169 150 32 chr5 41765236 41767362 -110769897 + Lx5 LINE L1 1865 4339 -1538 3 903 1124 66 0 0 chr5 41767362 41767498 -110769761 + B1_Mm SINE Alu 3 138 -9 3 903 343 36 54 0 chr5 41767498 41767554 -110769705 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 3 903 13587 190 105 22 chr5 41767554 41770129 -110767130 + Lx5 LINE L1 4340 7045 -5 3 903 264 155 42 0 chr5 41770131 41770202 -110767057 + GA-rich Low_complexity Low_complexity 2 75 0 3 903 269 267 82 45 chr5 41772736 41772846 -110764413 + MIR SINE MIR 24 137 -125 3 903 379 280 40 8 chr5 41772858 41772984 -110764275 - HAL1-2a_MD LINE L1 -534 2490 2361 3 903 352 313 148 32 chr5 41773937 41774092 -110763167 + MIRc SINE MIR 36 208 -60 3 903 257 241 148 11 chr5 41774855 41774943 -110762316 + PB1D10 SINE Alu 18 117 0 3 903 243 0 0 0 chr5 41775360 41775387 -110761872 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 3 903 22 0 0 0 chr5 41775595 41775617 -110761642 + AT_rich Low_complexity Low_complexity 1 22 0 3 903 204 40 0 0 chr5 41776101 41776126 -110761133 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 3 903 795 116 0 0 chr5 41776128 41776249 -110761010 + (GA)n Simple_repeat Simple_repeat 1 121 0 3 903 197 264 217 11 chr5 41776335 41776427 -110760832 - MIR SINE MIR -119 143 33 3 903 638 245 0 21 chr5 41777099 41777241 -110760018 - B4A SINE B4 -8 284 146 3 903 296 272 86 11 chr5 41777675 41777768 -110759491 - ORR1E LTR MaLR -239 120 21 3 903 356 318 248 5 chr5 41777999 41778217 -110759042 - MLT1F2 LTR MaLR -43 517 235 3 903 2009 285 129 14 chr5 41778227 41779024 -110758235 + Tigger5 DNA MER2_type 652 1540 -866 3 903 1360 281 98 14 chr5 41779019 41779518 -110757741 + Tigger5 DNA MER2_type 1859 2399 -7 3 903 1919 327 117 75 chr5 41780170 41780589 -110756670 + MTE-int LTR MaLR 59 497 -1083 3 903 960 145 12 6 chr5 41780589 41780756 -110756503 + Lx2 LINE L1 6830 6997 0 3 903 1919 327 117 75 chr5 41780756 41781646 -110755613 + MTE-int LTR MaLR 498 1423 -157 3 903 274 217 14 42 chr5 41781634 41781706 -110755553 + B1F SINE Alu 73 142 -7 3 903 2451 248 165 46 chr5 41782164 41783142 -110754117 + Lx8 LINE L1 6330 7423 -50 3 903 21 36 0 0 chr5 41783872 41783900 -110753359 + AT_rich Low_complexity Low_complexity 1 28 0 3 903 218 208 0 0 chr5 41785001 41785049 -110752210 + A-rich Low_complexity Low_complexity 1 48 0 3 903 470 345 20 27 chr5 41786328 41786477 -110750782 + ORR1E LTR MaLR 1 148 -211 3 903 2158 131 47 41 chr5 41786521 41786886 -110750373 - IAPLTR1_Mm LTR ERVK 0 367 1 3 903 58042 17 7 4 chr5 41786886 41793337 -110743922 - IAPEz-int LTR ERVK 0 6481 8 3 903 2119 137 47 41 chr5 41793337 41793702 -110743557 - IAPLTR1_Mm LTR ERVK 0 367 1 3 903 237 317 167 0 chr5 41793716 41793836 -110743423 + ORR1E LTR MaLR 237 376 -3 3 903 207 302 0 0 chr5 41794200 41794253 -110743006 + GA-rich Low_complexity Low_complexity 4 56 0 3 903 221 332 204 40 chr5 41795350 41795551 -110741708 + L2 LINE L2 385 618 -2801 3 903 372 43 0 0 chr5 41795657 41795703 -110741556 + (TTTTA)n Simple_repeat Simple_repeat 5 50 0 3 903 708 238 0 0 chr5 41795740 41795866 -110741393 - B3 SINE B2 -89 127 2 3 903 866 309 46 31 chr5 41795881 41796232 -110741027 + MTD LTR MaLR 64 419 0 3 903 214 333 143 0 chr5 41796566 41796692 -110740567 + L2 LINE L2 1154 1297 -2122 3 903 182 274 87 19 chr5 41796779 41796883 -110740376 + L2 LINE L2 1425 1535 -1884 3 903 239 213 21 0 chr5 41797326 41797373 -110739886 - ID4_ SINE ID -32 51 4 3 903 465 245 47 9 chr5 41797375 41797482 -110739777 - PB1D10 SINE Alu -1 116 6 3 903 1156 148 110 0 chr5 41797662 41797871 -110739388 + MTC LTR MaLR 1 232 -189 3 903 560 316 28 17 chr5 41798696 41798876 -110738383 + B3A SINE B2 1 182 -16 3 903 249 98 0 0 chr5 41798879 41798920 -110738339 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 903 501 105 0 0 chr5 41798920 41799006 -110738253 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 903 799 225 0 0 chr5 41799006 41799144 -110738115 + B3 SINE B2 2 139 -77 3 903 423 0 0 0 chr5 41799144 41799191 -110738068 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 903 595 318 47 50 chr5 41799214 41799512 -110737747 + L1MA4 LINE L1 5609 5905 -395 3 903 205 156 0 0 chr5 41799804 41799836 -110737423 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 903 291 157 0 0 chr5 41801845 41801896 -110735363 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 903 280 288 62 0 chr5 41802137 41802217 -110735042 - MIR SINE MIR -96 166 82 3 903 307 250 65 43 chr5 41803203 41803295 -110733964 + MLT1A LTR MaLR 1 94 -280 3 903 185 211 0 0 chr5 41803847 41803885 -110733374 + MIRc SINE MIR 61 98 -170 3 903 189 107 0 0 chr5 41804447 41804475 -110732784 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 3 903 264 291 12 12 chr5 41805566 41805646 -110731613 - MIR SINE MIR -70 192 113 3 903 416 298 136 68 chr5 41805791 41806086 -110731173 + ORR1E LTR MaLR 11 325 -34 3 903 240 158 0 0 chr5 41806880 41806937 -110730322 + CT-rich Low_complexity Low_complexity 1 57 0 3 903 21 0 0 0 chr5 41807339 41807360 -110729899 + AT_rich Low_complexity Low_complexity 1 21 0 3 903 221 232 17 51 chr5 41809681 41809740 -110727519 + polypurine Low_complexity Low_complexity 4 60 0 3 903 196 301 135 10 chr5 41810544 41810648 -110726611 - MIRb SINE MIR -150 118 2 3 904 28 48 0 0 chr5 41812691 41812733 -110724526 + AT_rich Low_complexity Low_complexity 1 42 0 3 904 263 308 12 49 chr5 41813383 41813465 -110723794 - ID4_ SINE ID -3 80 2 3 904 240 284 12 12 chr5 41814838 41814920 -110722339 + Tigger1 DNA MER2_type 147 228 -2190 3 904 2760 243 12 15 chr5 41814940 41815537 -110721722 - Lx5 LINE L1 0 7050 6456 3 904 383 103 0 0 chr5 41815546 41815604 -110721655 - Lx LINE L1 -7 6647 6590 3 904 1818 198 6 3 chr5 41815644 41815968 -110721291 - Lx5 LINE L1 -90 6960 6636 3 904 19940 162 117 6 chr5 41815978 41820323 -110716936 - Lx3C LINE L1 -2 6974 2054 3 904 180 0 0 0 chr5 41820323 41820343 -110716916 + (TGG)n Simple_repeat Simple_repeat 1 20 0 3 904 19940 154 147 5 chr5 41820343 41821005 -110716254 - Lx3C LINE L1 -3824 2053 1382 3 904 221 185 0 18 chr5 41821158 41821213 -110716046 + T-rich Low_complexity Low_complexity 2 55 0 4 904 2295 110 0 63 chr5 41821898 41822246 -110715013 - ORR1A3 LTR MaLR 0 326 1 4 904 828 104 0 0 chr5 41822750 41822884 -110714375 + (TG)n Simple_repeat Simple_repeat 2 135 0 4 904 1175 133 119 12 chr5 41822981 41823225 -110714034 - Lx9 LINE L1 -7 7637 7368 4 904 290 396 0 19 chr5 41823233 41823336 -110713923 - B4A SINE B4 -114 178 78 4 904 264 268 29 67 chr5 41823686 41823790 -110713469 - MLT1B LTR MaLR -33 357 258 4 904 767 271 100 45 chr5 41823796 41824086 -110713173 + ORR1E LTR MaLR 5 310 -49 4 904 302 0 26 0 chr5 41824087 41824125 -110713134 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 4 904 228 67 0 0 chr5 41824243 41824273 -110712986 + (TCC)n Simple_repeat Simple_repeat 2 31 0 4 904 469 289 95 25 chr5 41826254 41826558 -110710701 + L1MD3 LINE L1 7428 7713 -282 4 904 21 0 0 0 chr5 41826962 41826983 -110710276 + AT_rich Low_complexity Low_complexity 1 21 0 4 904 325 289 26 0 chr5 41829004 41829080 -110708179 + ID4_ SINE ID 2 79 -4 4 904 434 374 106 32 chr5 41829113 41829207 -110708052 - MLT1A0 LTR MaLR 0 365 280 4 904 1176 89 0 0 chr5 41829207 41829353 -110707906 + B1_Mus1 SINE Alu 3 148 0 4 904 434 374 106 32 chr5 41829353 41829598 -110707661 - MLT1A0 LTR MaLR -86 279 1 4 904 1172 254 53 62 chr5 41830302 41830606 -110706653 + ORR1E LTR MaLR 5 301 -58 4 904 2093 164 39 8 chr5 41830606 41830969 -110706290 - ORR1D1 LTR MaLR 0 374 1 4 904 1172 254 53 62 chr5 41830969 41831020 -110706239 + ORR1E LTR MaLR 302 357 -2 4 904 229 350 160 27 chr5 41831979 41832273 -110704986 + L2 LINE L2 2734 3066 -353 4 904 186 191 0 0 chr5 41832396 41832443 -110704816 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 4 904 257 325 23 11 chr5 41832506 41832680 -110704579 + (CATA)n Simple_repeat Simple_repeat 1 176 0 4 904 514 245 49 22 chr5 41833775 41833960 -110703299 - L1MA5 LINE L1 -298 6002 5804 4 904 343 346 154 105 chr5 41834885 41835295 -110701964 + MLT1F2 LTR MaLR 71 500 -60 4 904 282 29 0 0 chr5 41836142 41836177 -110701082 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 4 904 2379 52 127 0 chr5 41837424 41837732 -110699527 - L1_Mus3 LINE L1 -4 6634 6288 4 904 697 354 21 28 chr5 41838035 41838317 -110698942 - B4A SINE B4 -12 280 1 4 904 1843 287 66 23 chr5 41838584 41839237 -110698022 + Lx8 LINE L1 6067 6747 -726 4 904 898 310 66 27 chr5 41839306 41839638 -110697621 - MLT1A0 LTR MaLR 0 365 21 4 904 190 290 130 9 chr5 41839653 41839761 -110697498 + MIRb SINE MIR 114 234 -34 4 904 2091 147 15 12 chr5 41840918 41841242 -110696017 + ORR1A4 LTR MaLR 5 329 0 4 904 3267 227 21 15 chr5 41841936 41842648 -110694611 + Lx7 LINE L1 6586 7301 -395 4 904 270 0 0 0 chr5 41842677 41842707 -110694552 + (TTGG)n Simple_repeat Simple_repeat 1 30 0 4 904 236 235 35 0 chr5 41842732 41842817 -110694442 + T-rich Low_complexity Low_complexity 5 92 0 4 904 43 35 0 0 chr5 41842863 41842920 -110694339 + AT_rich Low_complexity Low_complexity 1 57 0 4 904 679 130 16 0 chr5 41843286 41843409 -110693850 + (TC)n Simple_repeat Simple_repeat 1 125 0 4 904 239 265 29 0 chr5 41843511 41843579 -110693680 + ORR1E LTR MaLR 269 338 -21 4 904 200 345 103 8 chr5 41843991 41844108 -110693151 - L2 LINE L2 -492 2927 2800 4 904 279 0 0 0 chr5 41844174 41844205 -110693054 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 904 9235 42 19 0 chr5 41844562 41846366 -110690893 - L1Md_F2 LINE L1 -1 6581 4740 4 904 966 77 0 0 chr5 41846359 41846489 -110690770 - L1Md_F2 LINE L1 -1913 3970 3841 4 904 266 347 98 45 chr5 41846558 41846704 -110690555 + MIRc SINE MIR 17 172 -96 4 904 244 310 53 6 chr5 41846713 41846807 -110690452 + MIRc SINE MIR 62 160 -116 4 904 459 52 0 0 chr5 41847916 41847974 -110689285 + (GA)n Simple_repeat Simple_repeat 2 59 0 4 904 1716 152 3 128 chr5 41848273 41848345 -110688914 - ORR1A4 LTR MaLR 0 329 272 4 904 2206 57 0 4 chr5 41848345 41848609 -110688650 + L1_Mus1 LINE L1 6305 6567 0 4 904 1716 152 3 128 chr5 41848609 41848912 -110688347 - ORR1A4 LTR MaLR -58 271 1 4 904 360 0 0 0 chr5 41849529 41849569 -110687690 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 904 244 276 55 23 chr5 41849598 41849729 -110687530 + MLT2D LTR ERVL 1 143 -254 4 904 297 0 0 0 chr5 41849953 41849986 -110687273 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 904 593 293 77 161 chr5 41850132 41850628 -110686631 + MLT2C2 LTR ERVL 4 457 -7 4 904 231 336 49 0 chr5 41851783 41851905 -110685354 - MER53 DNA hAT -40 153 26 4 904 1371 245 66 30 chr5 41852288 41852650 -110684609 + MTE2b LTR MaLR 1 375 -4 4 904 2882 91 14 26 chr5 41852724 41853140 -110684119 - Lx3_Mus LINE L1 0 7009 6599 4 904 8546 78 5 15 chr5 41853140 41855036 -110682223 + Lx3_Mus LINE L1 4737 6611 -398 4 904 4517 191 187 18 chr5 41855034 41855420 -110681839 - Lx7 LINE L1 -1507 6189 5707 4 904 339 25 0 0 chr5 41855420 41855460 -110681799 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 904 4517 183 102 27 chr5 41855460 41855900 -110681359 - Lx7 LINE L1 -174 5706 5225 4 904 405 0 0 0 chr5 41855900 41855945 -110681314 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 904 414 0 0 0 chr5 41855945 41855990 -110681269 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 904 4517 183 102 27 chr5 41855990 41856432 -110680827 - Lx7 LINE L1 -656 5224 4783 4 904 230 228 0 50 chr5 41856403 41856463 -110680796 - L1_Mur3 LINE L1 -1021 4856 4800 4 904 38811 14 0 7 chr5 41856464 41861871 -110675388 + L1Md_A LINE L1 223 5586 -297 4 904 9380 13 1 0 chr5 41861871 41862866 -110674393 + L1Md_A LINE L1 5587 6582 0 4 904 3405 172 22 37 chr5 41862866 41863542 -110673717 - L1_Mur3 LINE L1 -1070 4810 4145 4 904 750 211 8 0 chr5 41863544 41863677 -110673582 + B1_Mur3 SINE Alu 9 142 -7 4 904 221 30 61 0 chr5 41863682 41863715 -110673544 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 904 1866 105 10 17 chr5 41863874 41864164 -110673095 - L1_Mur3 LINE L1 -1735 4145 3858 4 904 4398 140 30 10 chr5 41864164 41864957 -110672302 + L1_Mur3 LINE L1 3043 3851 -2029 4 904 1301 73 73 0 chr5 41865021 41865198 -110672061 + B2_Mm1t SINE B2 2 191 -2 4 904 376 303 107 24 chr5 41865308 41865477 -110671782 - MLT1I LTR MaLR -17 394 212 4 904 622 269 53 27 chr5 41866360 41866547 -110670712 + B3A SINE B2 3 194 -4 4 904 327 330 33 33 chr5 41867292 41867474 -110669785 - MIRb SINE MIR -80 188 7 4 904 369 0 0 0 chr5 41867524 41867565 -110669694 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 904 1893 175 39 29 chr5 41868556 41868938 -110668321 - ORR1B1 LTR MaLR -8 386 1 4 904 185 273 91 0 chr5 41869279 41869345 -110667914 + MIRm SINE MIR 99 170 -106 4 904 37526 29 2 9 chr5 41869346 41874557 -110662702 + L1Md_T LINE L1 416 5586 -297 4 904 8927 36 1 0 chr5 41874557 41875552 -110661707 + L1Md_T LINE L1 5587 6582 0 4 904 1092 169 108 28 chr5 41875636 41875885 -110661374 - ORR1A3 LTR MaLR -57 269 1 4 904 191 336 83 38 chr5 41877266 41877399 -110659860 - MIRb SINE MIR -40 228 90 4 904 360 241 97 44 chr5 41877399 41877512 -110659747 + MER96 DNA hAT 14 132 -43 4 904 456 19 0 0 chr5 41877739 41877792 -110659467 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 904 297 75 0 0 chr5 41877944 41877984 -110659275 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 4 904 360 250 0 0 chr5 41878620 41878692 -110658567 + ID4_ SINE ID 9 80 -3 4 904 927 289 32 28 chr5 41878706 41878959 -110658300 - ORR1E LTR MaLR -105 254 1 4 904 365 286 48 35 chr5 41879779 41879924 -110657335 - MIRb SINE MIR -71 197 51 4 904 1794 102 22 11 chr5 41880442 41880709 -110656550 + L1_Mm LINE L1 4985 5254 -629 4 904 37302 62 1 24 chr5 41880705 41886622 -110650637 + L1Md_T LINE L1 99 5586 -297 4 904 8542 57 0 0 chr5 41886622 41887618 -110649641 + L1Md_T LINE L1 5587 6582 0 4 904 2954 38 0 0 chr5 41887629 41887973 -110649286 + L1Md_F2 LINE L1 5243 5586 -297 4 904 8943 29 3 3 chr5 41887973 41888956 -110648303 + L1Md_F2 LINE L1 5587 6569 -13 4 904 524 259 33 28 chr5 41889563 41889774 -110647485 + L1M2 LINE L1 5398 5609 -688 4 904 1026 265 35 32 chr5 41889780 41890064 -110647195 + B4 SINE B4 8 292 0 4 904 288 0 0 0 chr5 41890112 41890144 -110647115 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 904 378 291 63 6 chr5 41890152 41890311 -110646948 + L1M2 LINE L1 5616 5783 -520 4 904 371 268 30 20 chr5 41890311 41890410 -110646849 + Lx5 LINE L1 6819 6918 -132 4 904 279 143 0 0 chr5 41890431 41890473 -110646786 - tRNA-Met-i tRNA tRNA -33 42 1 4 904 278 216 0 112 chr5 41890481 41890606 -110646653 + Lx5 LINE L1 6932 7042 -8 4 904 693 298 71 67 chr5 41890588 41891094 -110646165 + L1MA7 LINE L1 5757 6257 -34 4 904 30 45 0 0 chr5 41891099 41891143 -110646116 + AT_rich Low_complexity Low_complexity 1 44 0 4 904 841 270 24 0 chr5 41891235 41891446 -110645813 - B3 SINE B2 0 216 1 4 904 295 281 21 43 chr5 41892617 41892710 -110644549 - LTR37B LTR ERV1 -377 91 1 4 904 659 264 0 53 chr5 41892887 41893039 -110644220 + B4A SINE B4 2 145 -147 4 904 440 117 0 13 chr5 41893113 41893191 -110644068 + (CATA)n Simple_repeat Simple_repeat 4 80 0 4 904 3155 70 8 5 chr5 41893578 41893979 -110643280 - L1_Mus3 LINE L1 -1 6637 6236 4 904 615 27 0 0 chr5 41894747 41894820 -110642439 + (GA)n Simple_repeat Simple_repeat 2 74 0 4 904 637 217 37 2 chr5 41897028 41897173 -110640086 + L1MA6 LINE L1 5179 5329 -983 4 904 5092 198 16 5 chr5 41897173 41898055 -110639204 + Lx5 LINE L1 6152 7043 -7 4 904 412 222 156 128 chr5 41898055 41898236 -110639023 + L1MA6 LINE L1 5330 5513 -799 4 904 1384 121 16 0 chr5 41898236 41898426 -110638833 + B2_Mm2 SINE B2 1 193 -2 4 904 412 222 156 128 chr5 41898426 41898459 -110638800 + L1MA6 LINE L1 5514 5549 -763 4 904 1239 282 95 8 chr5 41898471 41898839 -110638420 - MTD LTR MaLR -14 405 6 4 904 1470 278 87 46 chr5 41898842 41899452 -110637807 + L1MA6 LINE L1 5539 6173 -127 4 904 27 49 0 0 chr5 41899470 41899511 -110637748 + AT_rich Low_complexity Low_complexity 1 41 0 4 904 303 278 192 58 chr5 41899511 41899683 -110637576 - L1M4 LINE L1 -3764 3242 3048 4 904 30104 118 24 26 chr5 41899800 41906036 -110631223 - L1_Mus2 LINE L1 -1 6565 357 4 904 650 229 1 121 chr5 41906080 41906270 -110630989 - L1VL1 LINE L1 -6019 403 100 4 904 240 175 95 0 chr5 41906352 41906415 -110630844 + L1M4b LINE L1 1599 1667 -5667 4 904 568 250 253 19 chr5 41906854 41906976 -110630283 - L1M4 LINE L1 -4926 2408 2257 4 904 220 27 54 0 chr5 41906976 41907013 -110630246 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 4 904 568 261 221 35 chr5 41907013 41907759 -110629500 - L1M4 LINE L1 -5078 2256 1400 4 904 1946 256 25 26 chr5 41907996 41908516 -110628743 - Lx6 LINE L1 -27 7433 6557 5 904 249 154 0 0 chr5 41908485 41908524 -110628735 - Lx6 LINE L1 -579 6881 6843 5 904 595 282 180 93 chr5 41908621 41909232 -110628027 - L1M4 LINE L1 -5871 1033 370 4 904 268 167 42 0 chr5 41909771 41909843 -110627416 + (TTTG)n Simple_repeat Simple_repeat 1 75 0 5 904 798 137 86 11 chr5 41909843 41910013 -110627246 - ORR1A3 LTR MaLR -52 277 100 5 904 187 343 99 50 chr5 41910885 41911106 -110626153 - L2a LINE L2 -2 3424 3193 5 904 359 333 62 27 chr5 41911205 41911461 -110625798 + L1MEc LINE L1 210 474 -5926 5 904 204 323 61 0 chr5 41911531 41911630 -110625629 - L2a LINE L2 -456 2963 2859 5 904 435 164 0 0 chr5 41911892 41911959 -110625300 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 5 904 432 249 0 0 chr5 41911959 41911984 -110625275 + ID4 SINE ID 18 99 -53 5 904 192 228 0 0 chr5 41911984 41912041 -110625218 + GA-rich Low_complexity Low_complexity 1 57 0 5 904 1475 60 22 11 chr5 41912138 41912322 -110624937 - B2_Mm2 SINE B2 -8 187 2 5 904 390 330 92 27 chr5 41912630 41912814 -110624445 - MLT1A0 LTR MaLR -4 361 166 5 904 219 80 59 20 chr5 41912831 41912882 -110624377 + (TTAA)n Simple_repeat Simple_repeat 2 54 0 5 904 341 270 74 26 chr5 41913414 41913562 -110623697 - MIRc SINE MIR -55 213 55 5 904 3252 221 73 7 chr5 41915003 41915891 -110621368 + RCHARR1 DNA MER1_type 1 947 -27 5 904 3359 171 7 5 chr5 41916305 41916863 -110620396 + RLTR17 LTR ERVK 1 559 -133 5 904 220 274 0 0 chr5 41918005 41918056 -110619203 - MIRc SINE MIR -95 173 123 5 904 2595 152 14 9 chr5 41918884 41919303 -110617956 - MTC LTR MaLR 0 421 1 5 904 360 0 0 0 chr5 41920314 41920354 -110616905 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 904 330 67 0 0 chr5 41921120 41921165 -110616094 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 5 904 646 278 128 0 chr5 41921165 41921345 -110615914 - B3 SINE B2 -13 203 1 5 904 1243 75 0 0 chr5 41921835 41921981 -110615278 + B1_Mus1 SINE Alu 3 148 0 5 904 399 238 71 0 chr5 41922319 41922403 -110614856 + RSINE1 SINE B4 76 165 0 5 904 441 0 0 0 chr5 41922983 41923032 -110614227 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 904 1611 73 5 0 chr5 41923343 41923561 -110613698 - L1_Mus4 LINE L1 -695 5941 5723 5 904 5490 82 12 3 chr5 41923561 41924243 -110613016 + L1_Mus4 LINE L1 5948 6635 -1 5 904 680 330 35 32 chr5 41924297 41924613 -110612646 + LTR40b LTR ERVL 146 462 0 5 904 254 254 218 0 chr5 41927691 41927801 -110609458 - MLT1I LTR MaLR -277 134 1 5 904 291 338 20 7 chr5 41927820 41927972 -110609287 + GA-rich Low_complexity Low_complexity 3 156 0 5 904 805 276 0 6 chr5 41929721 41929892 -110607367 + B3A SINE B2 2 171 -27 5 904 459 0 0 0 chr5 41929893 41929944 -110607315 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 904 618 301 75 21 chr5 41930409 41930596 -110606663 - B4A SINE B4 -72 220 24 5 904 313 257 16 66 chr5 41930627 41930748 -110606511 - MIRm SINE MIR -107 161 47 5 904 3606 148 20 2 chr5 41931100 41931661 -110605598 + Lx LINE L1 6083 6653 -1 5 904 3330 58 21 17 chr5 41934727 41935146 -110602113 + BGLII LTR ERVK 1 421 0 5 904 1145 148 33 0 chr5 41935391 41935573 -110601686 - RMER1B Other Other -273 793 606 5 904 1200 190 89 0 chr5 41935563 41935810 -110601449 + RMER1B Other Other 789 1057 -9 5 904 195 394 0 0 chr5 41936077 41936171 -110601088 - MIR SINE MIR -58 204 111 5 904 227 214 71 0 chr5 41937030 41937086 -110600173 + ORR1E LTR MaLR 52 111 -248 5 904 180 0 0 0 chr5 41937089 41937109 -110600150 + (G)n Simple_repeat Simple_repeat 1 20 0 5 904 195 186 0 0 chr5 41937396 41937439 -110599820 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 904 382 321 70 73 chr5 41937511 41937770 -110599489 + MTEa LTR MaLR 10 267 -112 5 904 257 333 11 21 chr5 41937779 41937874 -110599385 + MT2A LTR ERVL 334 427 -106 5 904 235 96 113 19 chr5 41938694 41938747 -110598512 - MIRc SINE MIR -94 174 117 5 904 5476 172 136 113 chr5 41939253 41940948 -110596311 + Lx7 LINE L1 412 2176 -3704 5 904 543 31 0 0 chr5 41940948 41941013 -110596246 + (GA)n Simple_repeat Simple_repeat 1 65 0 5 904 6200 174 179 175 chr5 41941013 41941167 -110596092 + Lx7 LINE L1 2177 2335 -3551 5 904 2053 151 97 11 chr5 41941167 41941548 -110595711 - MTC LTR MaLR 0 421 8 5 904 6200 174 179 175 chr5 41941548 41942934 -110594325 + Lx7 LINE L1 2336 3772 -2114 5 904 705 24 0 0 chr5 41942934 41943017 -110594242 + (GA)n Simple_repeat Simple_repeat 1 83 0 5 1 8015 158 68 26 chr5 41943017 41943195 -110594064 + Lx7 LINE L1 3765 3963 -1917 5 905 264 30 0 0 chr5 41943195 41943228 -110594031 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 905 10580 160 57 25 chr5 41943228 41943869 -110593390 + Lx7 LINE L1 3964 4625 -1255 5 905 180 0 0 0 chr5 41943869 41943889 -110593370 + (CA)n Simple_repeat Simple_repeat 2 21 0 5 905 10580 173 48 27 chr5 41943889 41945545 -110591714 + Lx7 LINE L1 4626 6311 -1385 5 905 900 240 20 149 chr5 41945557 41945905 -110591354 + Lx7 LINE L1 6994 7296 -400 5 905 208 189 0 26 chr5 41945920 41945996 -110591263 + CT-rich Low_complexity Low_complexity 2 75 0 5 905 23 0 0 0 chr5 41946004 41946027 -110591232 + AT_rich Low_complexity Low_complexity 1 23 0 5 905 1175 214 34 82 chr5 41946033 41946389 -110590870 + Lx7 LINE L1 7356 7694 -2 5 905 489 110 0 0 chr5 41946399 41946472 -110590787 + (GAA)n Simple_repeat Simple_repeat 1 73 0 5 905 1023 152 0 0 chr5 41946472 41946650 -110590609 + GA-rich Low_complexity Low_complexity 3 180 0 5 905 859 206 63 11 chr5 41946976 41947167 -110590092 + Lx5 LINE L1 6850 7050 0 5 905 659 215 92 20 chr5 41947196 41947348 -110589911 - B3A SINE B2 -1 197 35 5 905 432 0 0 0 chr5 41947388 41947436 -110589823 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 905 441 0 0 0 chr5 41947436 41947484 -110589775 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 905 684 288 34 64 chr5 41948698 41948902 -110588357 + B3A SINE B2 1 198 0 5 905 521 283 88 36 chr5 41948926 41949120 -110588139 + MER2 DNA MER2_type 141 344 -1 5 905 7672 75 42 5 chr5 41949397 41950520 -110586739 + L1_Mus3 LINE L1 5474 6636 -2 5 905 182 346 0 49 chr5 41950536 41950618 -110586641 + L2b LINE L2 3290 3367 -8 5 905 2387 120 3 0 chr5 41951068 41951392 -110585867 - ORR1A2 LTR MaLR -2 325 1 5 905 366 247 63 25 chr5 41951502 41951660 -110585599 + RMER17C LTR ERVK 112 275 -135 5 905 216 0 0 0 chr5 41951660 41951684 -110585575 + (A)n Simple_repeat Simple_repeat 1 24 0 5 905 414 0 0 0 chr5 41952833 41952879 -110584380 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 905 357 315 255 78 chr5 41954583 41954882 -110582377 + ORR1E LTR MaLR 4 355 -4 5 905 5434 98 61 38 chr5 41955493 41956863 -110580396 - L1_Mus2 LINE L1 0 6566 5155 5 905 5565 161 24 31 chr5 41957406 41958516 -110578743 + L1Md_T LINE L1 103 1205 -5411 5 905 37064 33 0 0 chr5 41958522 41962939 -110574320 + L1Md_T LINE L1 1170 5586 -297 5 905 8597 53 0 0 chr5 41962939 41963935 -110573324 + L1Md_T LINE L1 5587 6582 0 5 905 3280 128 14 44 chr5 41964002 41964566 -110572693 - RLTR20A1 LTR ERVK -1 550 4 5 905 186 250 221 0 chr5 41965242 41965310 -110571949 + MIRc SINE MIR 62 144 -124 5 905 1413 35 9 6 chr5 41965552 41965894 -110571365 + (TAGA)n Simple_repeat Simple_repeat 1 343 0 5 905 185 191 59 78 chr5 41966027 41966078 -110571181 - L2a LINE L2 -8 3418 3369 5 905 240 339 127 8 chr5 41966651 41966910 -110570349 + L2a LINE L2 2935 3224 -202 5 905 1836 185 39 78 chr5 41967419 41967829 -110569430 + ORR1B1 LTR MaLR 1 394 0 5 905 242 115 19 0 chr5 41967941 41967993 -110569266 + (TTTTTG)n Simple_repeat Simple_repeat 1 53 0 5 905 271 324 71 29 chr5 41968018 41968158 -110569101 + RSINE1 SINE B4 1 146 -19 5 905 6200 65 11 31 chr5 41968228 41969038 -110568221 + MusHAL1 LINE L1 1856 2665 -47 5 905 1279 61 0 0 chr5 41969038 41969185 -110568074 + B1_Mm SINE Alu 1 147 0 5 905 6200 65 11 31 chr5 41969185 41969248 -110568011 + MusHAL1 LINE L1 2666 2712 0 5 905 550 183 45 22 chr5 41969925 41970059 -110567200 + Lx9 LINE L1 7500 7636 -8 5 905 329 316 61 0 chr5 41970727 41970841 -110566418 + PB1 SINE Alu 5 125 -2 5 905 208 0 30 30 chr5 41970841 41970874 -110566385 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 5 905 417 262 61 20 chr5 41971778 41971926 -110565333 + L1MA7 LINE L1 6136 6289 -2 5 905 250 297 0 39 chr5 41971976 41972053 -110565206 + polypyrimidine Low_complexity Low_complexity 4 77 0 5 905 334 290 101 77 chr5 41972058 41972267 -110564992 - L2a LINE L2 -9 3417 3204 5 905 424 322 55 32 chr5 41972335 41972553 -110564706 + Charlie1 DNA MER1_type 5 227 -2554 5 905 1127 102 0 7 chr5 41972578 41972726 -110564533 - B1_Mus2 SINE Alu 0 147 1 5 905 246 364 0 24 chr5 41972746 41972870 -110564389 + Charlie1 DNA MER1_type 2654 2774 -7 5 905 325 359 79 45 chr5 41973026 41973204 -110564055 + ID_B1 SINE B4 4 187 -37 5 905 29516 84 21 1 chr5 41973204 41975382 -110561877 + L1Md_F2 LINE L1 387 2866 -3017 5 905 198 0 0 0 chr5 41975382 41975404 -110561855 + (GAAA)n Simple_repeat Simple_repeat 3 24 0 5 905 29516 83 31 2 chr5 41975404 41978095 -110559164 + L1Md_F2 LINE L1 2867 5585 -298 5 905 8296 52 13 3 chr5 41978095 41979069 -110558190 + L1Md_F2 LINE L1 5587 6570 -12 5 905 37363 28 3 8 chr5 41979181 41984164 -110553095 + L1Md_T LINE L1 636 5586 -297 5 905 8977 35 0 0 chr5 41984164 41985160 -110552099 + L1Md_T LINE L1 5587 6582 0 5 905 267 160 26 13 chr5 41985219 41985295 -110551964 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 905 213 289 0 0 chr5 41985348 41985400 -110551859 - L2a LINE L2 -266 3160 3109 5 905 723 284 35 0 chr5 41986599 41986800 -110550459 + MLT2B1 LTR ERVL 351 558 -9 5 905 372 43 0 0 chr5 41987024 41987070 -110550189 + (TATG)n Simple_repeat Simple_repeat 2 47 0 5 905 640 287 57 87 chr5 41987080 41987378 -110549881 + B4A SINE B4 4 292 0 5 905 468 0 0 0 chr5 41987397 41987449 -110549810 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 905 318 87 0 0 chr5 41987449 41987494 -110549765 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 905 386 226 59 25 chr5 41987592 41987710 -110549549 - MER3 DNA MER1_type -28 181 60 5 905 3869 211 74 60 chr5 41987972 41988863 -110548396 + RMER13B LTR ERVK 5 908 0 5 905 2298 153 220 7 chr5 41989043 41989333 -110547926 + RMER6A LTR ERVK 1 330 -390 5 905 867 37 0 0 chr5 41989333 41989440 -110547819 + (GA)n Simple_repeat Simple_repeat 2 108 0 5 905 2298 163 101 32 chr5 41989440 41989729 -110547530 + RMER6A LTR ERVK 313 744 -12 5 905 1227 262 60 0 chr5 41990071 41990372 -110546887 + MER2 DNA MER2_type 26 344 -1 5 905 251 320 188 35 chr5 41990430 41990712 -110546547 - L2a LINE L2 -2 3424 3100 5 905 383 314 48 101 chr5 41991373 41991600 -110545659 - LTR33B LTR ERVL -288 215 1 6 905 2048 196 3 0 chr5 41992551 41992888 -110544371 + Lx5 LINE L1 6431 6768 -282 6 905 251 300 71 19 chr5 41993555 41993664 -110543595 + MIR3 SINE MIR 75 180 -28 6 905 423 264 72 9 chr5 41994058 41994169 -110543090 + ID_B1 SINE B4 84 201 -23 6 905 366 285 82 30 chr5 41994169 41994192 -110543067 + B1F1 SINE Alu 3 143 -6 6 905 235 247 37 99 chr5 41994698 41994779 -110542480 + LTR88b LTR Gypsy? 661 736 -101 6 905 869 275 9 9 chr5 41995282 41995495 -110541764 + B3 SINE B2 1 213 -3 6 905 351 215 51 0 chr5 41995501 41995619 -110541640 + L1M4 LINE L1 5314 5440 -734 6 905 279 284 194 0 chr5 41995602 41995824 -110541435 + L1M1 LINE L1 5603 5867 -433 6 905 684 257 83 58 chr5 41995819 41996172 -110541087 + L1MA8 LINE L1 5929 6287 -4 6 905 287 209 55 45 chr5 41996183 41996293 -110540966 + L1M1 LINE L1 5719 5829 -474 6 905 222 37 0 0 chr5 41996627 41996654 -110540605 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 6 905 193 268 198 24 chr5 41996780 41996906 -110540353 - L4 LINE RTE -280 1749 1602 6 905 2919 189 42 9 chr5 41996946 41997489 -110539770 - Lx LINE L1 -5 6649 6089 6 905 648 252 32 19 chr5 41998020 41998178 -110539081 - MTE2a LTR MaLR -14 365 206 6 905 760 269 75 34 chr5 41998214 41998506 -110538753 - MTD LTR MaLR -115 304 1 6 905 2134 126 99 19 chr5 41998670 41999035 -110538224 + ORR1B1 LTR MaLR 1 394 0 6 905 555 326 89 62 chr5 41999129 41999545 -110537714 + MLT1D LTR MaLR 45 471 -34 6 905 237 356 57 57 chr5 42000181 42000321 -110536938 + MER63B DNA AcHobo 273 412 -24 1 905 1177 249 56 63 chr5 42000416 42000990 -110536269 - L1MA6 LINE L1 -130 6170 5601 2 905 2162 104 37 29 chr5 42001172 42001520 -110535739 - Lx LINE L1 0 6654 6304 3 905 729 277 10 36 chr5 42002917 42003112 -110534147 + B4 SINE B4 1 190 -102 4 905 231 264 151 14 chr5 42003188 42003261 -110533998 + MLT2B2 LTR ERVL 24 106 -409 5 905 982 15 37 0 chr5 42003309 42003445 -110533814 + (TC)n Simple_repeat Simple_repeat 2 142 0 6 905 640 307 88 30 chr5 42003445 42003707 -110533552 + MLT2B2 LTR ERVL 237 513 -2 5 905 374 400 56 9 chr5 42005568 42005800 -110531459 - MIRb SINE MIR -21 247 5 7 905 251 337 32 0 chr5 42006203 42006298 -110530961 + MIRb SINE MIR 44 141 -127 8 905 189 0 0 0 chr5 42006894 42006915 -110530344 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9 905 193 228 34 34 chr5 42007514 42007573 -110529686 - L2b LINE L2 -1 3374 3316 1 905 455 0 18 0 chr5 42008494 42008549 -110528710 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 1 905 202 346 51 0 chr5 42008866 42008944 -110528315 + MIRc SINE MIR 77 158 -110 1 905 379 286 62 0 chr5 42008954 42009066 -110528193 - MLT1H1 LTR MaLR -9 546 428 1 905 446 153 4 44 chr5 42009068 42009166 -110528093 + ORR1C1 LTR MaLR 1 93 -301 1 905 2520 119 24 7 chr5 42009166 42009588 -110527671 + Lx2A1 LINE L1 6523 6951 -57 1 905 229 318 0 16 chr5 42010993 42011057 -110526202 + Zaphod2 DNA Tip100 3461 3523 -1 1 905 183 42 0 0 chr5 42011589 42011613 -110525646 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 905 290 216 191 11 chr5 42011615 42011704 -110525555 + MER5A1 DNA MER1_type 29 133 -33 1 905 314 0 0 87 chr5 42011929 42011975 -110525284 - L1_Mus3 LINE L1 -608 6030 5989 1 905 3165 97 20 4 chr5 42011995 42012449 -110524810 + L1_Mus3 LINE L1 6178 6638 0 2 905 3575 40 18 7 chr5 42013639 42014088 -110523171 - L1Md_F2 LINE L1 0 6582 6129 2 905 24 0 0 0 chr5 42014927 42014951 -110522308 + AT_rich Low_complexity Low_complexity 1 24 0 2 905 1742 70 19 34 chr5 42015299 42015564 -110521695 + Lx LINE L1 6393 6653 -1 2 905 260 27 27 0 chr5 42015579 42015616 -110521643 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2 905 248 288 0 0 chr5 42015868 42015927 -110521332 + GA-rich Low_complexity Low_complexity 1 59 0 2 905 23 0 0 0 chr5 42016213 42016236 -110521023 + AT_rich Low_complexity Low_complexity 1 23 0 2 905 211 232 52 35 chr5 42018614 42018672 -110518587 - L2b LINE L2 -2 3373 3315 2 905 658 231 7 20 chr5 42019871 42020017 -110517242 - B1_Mur1 SINE Alu -3 146 3 2 905 25 31 0 0 chr5 42020039 42020071 -110517188 + AT_rich Low_complexity Low_complexity 1 32 0 2 905 655 174 7 7 chr5 42021186 42021336 -110515923 + (TA)n Simple_repeat Simple_repeat 2 151 0 3 905 886 44 0 0 chr5 42021569 42021682 -110515577 + B1_Mus2 SINE Alu 1 113 -34 3 905 1990 51 8 4 chr5 42021682 42021938 -110515321 + L1Md_F2 LINE L1 6326 6582 0 3 905 440 280 154 45 chr5 42021971 42022483 -110514776 + L1M2 LINE L1 4823 5390 -457 3 905 665 173 104 15 chr5 42022526 42022661 -110514598 + B1_Mur4 SINE Alu 3 149 -1 3 905 449 299 88 46 chr5 42022692 42022976 -110514283 + L1M2 LINE L1 5443 5738 -562 3 905 929 289 95 4 chr5 42022995 42023520 -110513739 + L1MA4A LINE L1 5355 5927 -376 3 905 300 154 0 0 chr5 42023549 42023601 -110513658 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 905 225 0 0 0 chr5 42023902 42023927 -110513332 + (CTTA)n Simple_repeat Simple_repeat 3 27 0 3 905 1103 199 24 5 chr5 42024735 42024947 -110512312 - B3 SINE B2 0 216 1 3 905 207 286 78 0 chr5 42025110 42025187 -110512072 - L3b LINE CR1 -390 92 10 3 905 822 215 33 23 chr5 42025471 42025685 -110511574 + B3 SINE B2 1 216 0 4 905 219 36 0 0 chr5 42025736 42025764 -110511495 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 905 806 206 14 0 chr5 42025790 42025936 -110511323 + B1_Mur3 SINE Alu 1 148 -1 4 905 24 32 0 0 chr5 42026148 42026179 -110511080 + AT_rich Low_complexity Low_complexity 1 31 0 4 905 26 82 0 0 chr5 42026266 42026327 -110510932 + AT_rich Low_complexity Low_complexity 1 61 0 4 905 574 111 45 36 chr5 42026770 42026882 -110510377 + Lx3C LINE L1 6862 6974 -2 4 905 435 83 0 0 chr5 42026908 42026968 -110510291 + (GGGA)n Simple_repeat Simple_repeat 2 61 0 4 905 307 296 106 37 chr5 42027209 42027408 -110509851 + MIR SINE MIR 60 261 -1 4 905 23 0 0 0 chr5 42027927 42027950 -110509309 + AT_rich Low_complexity Low_complexity 1 23 0 4 905 225 0 0 0 chr5 42028223 42028248 -110509011 + (A)n Simple_repeat Simple_repeat 1 25 0 4 905 672 250 92 11 chr5 42028423 42028597 -110508662 - MTE2b LTR MaLR -191 188 1 5 905 414 241 123 0 chr5 42028602 42028764 -110508495 + Charlie7 DNA MER1_type 1044 1225 -1387 5 905 31358 88 24 2 chr5 42028811 42034677 -110502582 + L1_Mus2 LINE L1 217 6221 -345 5 905 1899 54 96 4 chr5 42034984 42035245 -110502014 + IAPLTR2b LTR ERVK 1 285 -42 5 905 545 278 132 14 chr5 42036048 42036472 -110500787 + L1MB2 LINE L1 4876 5349 -791 5 905 31 68 0 0 chr5 42036539 42036598 -110500661 + AT_rich Low_complexity Low_complexity 1 59 0 5 905 543 56 0 0 chr5 42036598 42036669 -110500590 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 905 715 281 84 82 chr5 42036732 42037235 -110500024 + RMER1B Other Other 33 863 -479 5 905 561 273 34 54 chr5 42037249 42037454 -110499805 + RMER1B Other Other 168 368 -698 5 905 1820 168 42 47 chr5 42037504 42037905 -110499354 + RMER1B Other Other 664 1062 -4 5 905 940 274 92 26 chr5 42037883 42038306 -110498953 + L1MB2 LINE L1 5473 5923 -248 5 905 569 280 70 2 chr5 42038416 42038601 -110498658 + B3A SINE B2 2 216 0 6 905 831 176 7 0 chr5 42038741 42038877 -110498382 + B1_Mur2 SINE Alu 4 140 -9 6 905 380 198 22 0 chr5 42038879 42038970 -110498289 + Lx9 LINE L1 7398 7490 -154 6 905 21 0 0 0 chr5 42039325 42039346 -110497913 + AT_rich Low_complexity Low_complexity 1 21 0 6 905 764 267 39 10 chr5 42039382 42039590 -110497669 + B3 SINE B2 3 216 0 6 905 7022 167 40 14 chr5 42039709 42041557 -110495702 + Lx5 LINE L1 5141 7046 -4 6 905 454 248 60 26 chr5 42041655 42041771 -110495488 + B1F SINE Alu 13 132 -17 6 905 1070 111 81 17 chr5 42043203 42043377 -110493882 + B2_Mm2 SINE B2 1 185 -10 6 905 1657 228 7 10 chr5 42043575 42043983 -110493276 + L1_Mur3 LINE L1 276 682 -7046 6 905 288 260 45 55 chr5 42043960 42044070 -110493189 + L1_Mur3 LINE L1 347 455 -7257 6 905 4159 170 85 33 chr5 42044094 42044714 -110492545 + Lx5 LINE L1 6073 6731 -319 7 905 201 39 0 0 chr5 42044714 42044740 -110492519 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 905 4159 170 85 33 chr5 42044740 42045046 -110492213 + Lx5 LINE L1 6732 7046 -4 7 905 3679 196 38 15 chr5 42045052 42045768 -110491491 - Lx5 LINE L1 -6 7044 6313 7 905 1153 128 22 0 chr5 42045786 42045965 -110491294 + B2_Mm2 SINE B2 6 188 -7 7 905 2852 169 52 19 chr5 42045968 42046618 -110490641 + L1_Mur3 LINE L1 2855 3526 -2354 6 905 1346 85 26 0 chr5 42046649 42046838 -110490421 - B2_Mm2 SINE B2 -1 194 1 7 905 704 286 22 22 chr5 42047202 42047384 -110489875 + B3A SINE B2 1 182 -16 7 905 225 0 0 0 chr5 42047386 42047411 -110489848 + (TA)n Simple_repeat Simple_repeat 2 26 0 7 905 291 75 0 0 chr5 42047414 42047454 -110489805 + B3A SINE B2 1 40 -158 7 905 224 291 0 18 chr5 42047465 42047478 -110489781 - RSINE1 SINE B4 -109 56 2 7 905 228 186 0 0 chr5 42047478 42047521 -110489738 - B2_Mm2 SINE B2 -152 43 1 7 905 961 303 70 40 chr5 42047559 42048302 -110488957 - L1MD LINE L1 -1911 4235 3471 8 905 648 298 63 58 chr5 42048555 42048585 -110488674 - L1M4 LINE L1 -2964 3182 3154 8 905 1262 133 0 5 chr5 42048585 42048781 -110488478 - B2_Mm2 SINE B2 0 195 1 8 905 648 298 63 58 chr5 42048781 42049145 -110488114 - L1M4 LINE L1 -2993 3153 2786 8 905 1030 55 0 0 chr5 42049157 42049285 -110487974 - B2_Mm2 SINE B2 -67 128 1 8 905 536 286 0 48 chr5 42049531 42049656 -110487603 - PB1D7 SINE Alu -1 119 1 8 905 288 285 104 10 chr5 42049689 42049891 -110487368 - L1MD LINE L1 -3517 2629 2409 8 905 1337 275 74 9 chr5 42049890 42050338 -110486921 - Lx8 LINE L1 -613 6860 6384 8 905 258 222 5 3 chr5 42050555 42050602 -110486657 - B1_Mus1 SINE Alu -99 50 3 8 905 623 254 93 93 chr5 42050607 42050811 -110486448 - B3 SINE B2 -10 206 3 8 905 240 216 0 0 chr5 42050944 42050995 -110486264 - MER58B DNA MER1_type 0 341 291 8 905 2787 26 0 0 chr5 42050995 42051337 -110485922 + L1Md_T LINE L1 5245 5586 -297 8 905 8475 33 0 0 chr5 42051337 42052333 -110484926 + L1Md_T LINE L1 5587 6582 0 8 905 1847 35 0 0 chr5 42052333 42052561 -110484698 + L1Md_F2 LINE L1 5359 5586 -297 9 905 7777 57 6 2 chr5 42052561 42053552 -110483707 + L1Md_F2 LINE L1 5587 6581 -1 9 905 462 352 110 0 chr5 42053552 42053825 -110483434 - MER58B DNA MER1_type -38 303 1 8 905 892 168 26 36 chr5 42054794 42054987 -110482272 + Lx5 LINE L1 6763 6994 -64 9 905 219 69 0 0 chr5 42055016 42055045 -110482214 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 9 905 806 281 27 0 chr5 42055087 42055272 -110481987 + B3 SINE B2 27 216 0 9 905 294 205 93 35 chr5 42056398 42056484 -110480775 + MT2B LTR ERVL 167 257 -344 9 905 372 171 29 0 chr5 42056416 42056486 -110480773 + B1_Mur3 SINE Alu 35 106 -43 9 905 1365 74 21 10 chr5 42056543 42056735 -110480524 + B2_Mm2 SINE B2 1 194 -1 9 905 2138 165 53 127 chr5 42056848 42057431 -110479828 + RMER21A LTR ERV1 1 540 -407 9 905 604 204 48 0 chr5 42057402 42057549 -110479710 + RMER21A LTR ERV1 681 834 -8 9 905 4446 253 30 26 chr5 42057653 42058055 -110479204 + Lx7 LINE L1 5554 5939 -1757 9 905 345 47 0 0 chr5 42058055 42058098 -110479161 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 905 4446 293 69 49 chr5 42058098 42059418 -110477841 + Lx7 LINE L1 5940 7308 -388 9 905 205 216 0 0 chr5 42059582 42059619 -110477640 + A-rich Low_complexity Low_complexity 1 37 0 1 905 599 225 84 15 chr5 42059717 42059848 -110477411 - B1_Mm SINE Alu -1 146 7 1 905 222 118 0 0 chr5 42060368 42060402 -110476857 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 905 368 222 0 24 chr5 42060420 42060503 -110476756 + ID2 SINE ID 3 83 0 1 905 339 85 0 0 chr5 42061004 42061051 -110476208 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 905 499 167 0 0 chr5 42061053 42061131 -110476128 + B1_Mur2 SINE Alu 52 129 -20 1 905 677 231 6 0 chr5 42061131 42061304 -110475955 + GA-rich Low_complexity Low_complexity 1 174 0 1 905 34 55 0 0 chr5 42061470 42061525 -110475734 + AT_rich Low_complexity Low_complexity 1 55 0 1 905 1307 70 0 5 chr5 42061738 42061925 -110475334 + L1Md_F2 LINE L1 6381 6566 -16 1 905 525 99 0 12 chr5 42061942 42062024 -110475235 + URR1B DNA MER1_type 145 225 0 1 905 613 212 75 8 chr5 42062154 42062287 -110474972 + B1_Mur2 SINE Alu 1 142 -7 1 905 261 0 0 0 chr5 42062290 42062319 -110474940 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 905 597 209 9 9 chr5 42062354 42062470 -110474789 + B3 SINE B2 15 130 -86 1 905 200 143 0 28 chr5 42062720 42062756 -110474503 + A-rich Low_complexity Low_complexity 2 36 0 1 905 981 145 134 5 chr5 42063534 42063721 -110473538 + URR1A DNA MER1_type 5 215 -11 1 905 656 190 189 5 chr5 42063948 42064149 -110473110 + Lx9 LINE L1 7391 7628 -16 1 905 21 0 0 0 chr5 42064150 42064171 -110473088 + AT_rich Low_complexity Low_complexity 1 21 0 1 905 32 26 0 0 chr5 42065481 42065520 -110471739 + AT_rich Low_complexity Low_complexity 1 39 0 1 905 310 291 0 71 chr5 42065643 42065728 -110471531 + ID4_ SINE ID 5 83 0 1 905 14134 165 83 94 chr5 42065793 42066465 -110470794 + Lx6 LINE L1 2140 2960 -2920 1 905 1196 42 0 0 chr5 42066465 42066607 -110470652 + B1_Mus2 SINE Alu 1 142 -5 1 905 14134 168 81 91 chr5 42066607 42069921 -110467338 + Lx6 LINE L1 2961 6089 -1371 1 905 499 270 24 8 chr5 42070114 42070241 -110467018 - B3 SINE B2 -11 205 77 1 905 222 248 130 17 chr5 42070242 42070357 -110466902 - L2 LINE L2 -1198 2221 2094 1 905 277 203 109 0 chr5 42070362 42070426 -110466833 - B3 SINE B2 -143 73 3 1 905 196 339 68 25 chr5 42070426 42070544 -110466715 - MIRm SINE MIR -116 160 38 1 905 313 261 177 0 chr5 42070687 42070817 -110466442 - Lx6 LINE L1 -27 7433 7281 1 905 566 254 56 7 chr5 42070893 42071036 -110466223 + B3A SINE B2 7 156 -42 1 905 188 323 204 51 chr5 42073264 42073538 -110463721 - L2 LINE L2 -379 3040 2725 1 113 307 340 115 39 chr5 42074054 42074262 -110462997 - MIRb SINE MIR -19 249 26 1 906 1763 158 13 22 chr5 42074574 42074891 -110462368 + Lx7 LINE L1 5587 5900 -1796 1 906 457 57 180 11 chr5 42075001 42075090 -110462169 + RMER21B LTR ERV1 327 430 -412 1 906 2801 221 86 81 chr5 42075092 42075873 -110461386 + Lx7 LINE L1 6645 7429 -267 1 906 506 207 137 7 chr5 42075872 42076018 -110461241 + Lx7 LINE L1 7532 7696 0 1 906 23 0 0 0 chr5 42076019 42076042 -110461217 + AT_rich Low_complexity Low_complexity 1 23 0 1 906 315 0 0 0 chr5 42076098 42076133 -110461126 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 1 906 636 64 6 11 chr5 42076133 42076236 -110461023 - B1_Mur4 SINE Alu 0 150 44 1 906 21 57 0 0 chr5 42076314 42076349 -110460910 + AT_rich Low_complexity Low_complexity 1 35 0 1 906 331 339 88 60 chr5 42077391 42077642 -110459617 - L3b LINE CR1 -68 414 157 1 906 354 45 0 0 chr5 42077810 42077854 -110459405 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 906 647 124 0 90 chr5 42078422 42078555 -110458704 + B1_Mus2 SINE Alu 27 147 0 1 906 784 268 134 26 chr5 42078647 42078915 -110458344 - MLT1A0 LTR MaLR -66 299 3 1 906 684 284 144 19 chr5 42079473 42079823 -110457436 - L3b LINE CR1 -121 4387 3981 1 906 215 308 257 17 chr5 42080050 42080225 -110457034 - MIRb SINE MIR -1 267 51 1 906 291 274 158 27 chr5 42080460 42080644 -110456615 - MER63D DNA AcHobo -803 258 51 1 906 909 241 15 5 chr5 42080763 42080963 -110456296 + B3 SINE B2 1 202 -14 1 906 303 344 84 0 chr5 42081042 42081173 -110456086 + B1F SINE Alu 1 142 -7 1 906 602 261 22 1 chr5 42081488 42081634 -110455625 - B3 SINE B2 -29 164 4 1 906 289 288 0 40 chr5 42081856 42081932 -110455327 + PB1D9 SINE Alu 7 79 -41 1 906 401 309 36 29 chr5 42081957 42082097 -110455162 + MER58A DNA MER1_type 83 223 -1 1 906 265 289 244 26 chr5 42082403 42082715 -110454544 + L1MCb LINE L1 58 437 -5608 1 906 401 311 131 30 chr5 42082775 42083103 -110454156 + L1MCb LINE L1 601 961 -5084 1 906 425 272 40 0 chr5 42083138 42083263 -110453996 - RMER15 LTR ERVL -43 532 403 1 906 873 199 97 0 chr5 42083551 42083727 -110453532 + ORR1D2 LTR MaLR 178 370 0 1 906 249 231 284 23 chr5 42083736 42084046 -110453213 + L1MCb LINE L1 3430 3820 -2744 1 906 36 70 0 0 chr5 42084855 42084926 -110452333 + AT_rich Low_complexity Low_complexity 1 71 0 1 906 646 167 0 0 chr5 42084959 42085061 -110452198 + B3 SINE B2 2 103 -113 1 906 255 280 13 39 chr5 42085274 42085430 -110451829 + Lx9 LINE L1 7486 7637 -7 1 906 426 292 0 26 chr5 42086748 42086771 -110450488 + MT2B LTR ERVL 145 164 -437 1 906 590 219 54 81 chr5 42086771 42086920 -110450339 + B1_Mus2 SINE Alu 3 147 0 1 906 320 293 0 12 chr5 42087694 42087777 -110449482 + ID4 SINE ID 2 83 0 1 906 536 267 13 46 chr5 42088505 42088658 -110448601 + B1F SINE Alu 1 148 -1 1 906 192 77 0 0 chr5 42088659 42088685 -110448574 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 906 416 243 17 70 chr5 42089190 42089305 -110447954 + B1_Mus2 SINE Alu 1 109 -11 1 906 828 226 42 17 chr5 42089298 42089482 -110447777 + B3 SINE B2 14 194 -4 1 906 32 57 0 14 chr5 42089930 42089965 -110447294 + AT_rich Low_complexity Low_complexity 1 35 0 1 906 467 211 152 30 chr5 42089965 42090097 -110447162 + B1_Mur2 SINE Alu 2 149 0 1 906 32 57 0 14 chr5 42090097 42090132 -110447127 + AT_rich Low_complexity Low_complexity 1 35 0 1 906 285 29 0 0 chr5 42090815 42090849 -110446410 + (A)n Simple_repeat Simple_repeat 1 34 0 1 906 32 75 0 0 chr5 42092915 42092982 -110444277 + AT_rich Low_complexity Low_complexity 1 67 0 1 906 1061 29 0 21 chr5 42095948 42096089 -110441170 + L1Md_F2 LINE L1 6432 6569 -13 1 906 21 57 0 0 chr5 42097731 42097766 -110439493 + AT_rich Low_complexity Low_complexity 1 35 0 1 906 31 0 0 0 chr5 42097842 42097873 -110439386 + AT_rich Low_complexity Low_complexity 1 31 0 1 906 25 31 0 0 chr5 42098945 42098977 -110438282 + GC_rich Low_complexity Low_complexity 1 32 0 1 906 239 328 96 43 chr5 42100010 42100198 -110437061 + Charlie1b DNA MER1_type 21 218 -305 1 906 835 315 92 35 chr5 42100906 42101310 -110435949 + MLT1D LTR MaLR 79 505 0 1 906 445 255 19 19 chr5 42101480 42101584 -110435675 - B1_Mur2 SINE Alu -45 104 1 1 906 1839 259 47 16 chr5 42101645 42101767 -110435492 + Lx7 LINE L1 6512 6636 -1060 1 906 405 0 0 0 chr5 42101767 42101812 -110435447 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 906 1839 259 47 16 chr5 42101812 42102183 -110435076 + Lx7 LINE L1 6637 7020 -676 1 906 372 39 0 0 chr5 42102210 42102261 -110434998 - RLTR10 LTR ERVK -339 51 1 1 906 328 217 0 0 chr5 42102268 42102328 -110434931 + Lx7 LINE L1 7053 7112 -584 1 906 4894 60 12 5 chr5 42102343 42102981 -110434278 + L1Md_F2 LINE L1 5924 6566 -16 1 906 10545 52 6 0 chr5 42102990 42104994 -110432265 - L1Md_F3 LINE L1 -14 6570 4556 1 906 819 32 0 74 chr5 42104994 42105129 -110432130 + L1Md_F2 LINE L1 6458 6582 0 1 906 572 264 62 17 chr5 42105139 42105316 -110431943 + Lx7 LINE L1 7127 7311 -385 1 906 300 91 0 0 chr5 42105318 42105362 -110431897 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 906 213 241 0 0 chr5 42105429 42105483 -110431776 + GA-rich Low_complexity Low_complexity 4 57 0 1 906 823 147 17 11 chr5 42105494 42105673 -110431586 + GA-rich Low_complexity Low_complexity 1 180 0 1 906 255 293 26 13 chr5 42105714 42105790 -110431469 + RSINE1 SINE B4 83 159 -6 1 906 317 308 0 0 chr5 42105894 42105972 -110431287 + ID4 SINE ID 3 80 -3 1 906 285 325 78 20 chr5 42106143 42106388 -110430871 + L1ME3B LINE L1 5381 5639 -534 1 906 1122 97 0 0 chr5 42106477 42106622 -110430637 + B1_Mus2 SINE Alu 1 145 -2 1 906 768 149 6 19 chr5 42106627 42106784 -110430475 + GA-rich Low_complexity Low_complexity 4 158 0 1 906 1039 82 4 21 chr5 42106786 42107025 -110430234 + (GAGAA)n Simple_repeat Simple_repeat 1 235 0 1 906 5385 119 36 1 chr5 42107224 42108065 -110429194 + Lx3A LINE L1 6109 6978 -3 1 906 642 160 6 68 chr5 42108149 42108294 -110428965 + RMER17B LTR ERVK 317 454 -504 1 906 297 0 0 0 chr5 42108294 42108327 -110428932 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 906 642 160 6 68 chr5 42108327 42108342 -110428917 + RMER17B LTR ERVK 455 467 -491 1 906 568 272 79 54 chr5 42109570 42109811 -110427448 + MLT1A0 LTR MaLR 31 277 -88 1 906 367 259 94 22 chr5 42110155 42110293 -110426966 + L1ME3B LINE L1 5684 5831 -409 1 906 277 328 77 42 chr5 42110300 42110337 -110426922 - Lx8 LINE L1 -2 7471 7437 1 906 1643 176 111 12 chr5 42110337 42110671 -110426588 - ORR1B2 LTR MaLR 0 367 1 1 906 647 281 259 47 chr5 42110671 42111121 -110426138 - Lx8 LINE L1 -37 7436 6887 1 906 1971 212 104 9 chr5 42111357 42111819 -110425440 - RMER20A LTR ERVK 0 516 11 1 906 3418 201 43 12 chr5 42112116 42113061 -110424198 + Lx7 LINE L1 5096 6069 -1627 1 906 278 222 0 0 chr5 42113055 42113100 -110424159 + Lx7 LINE L1 7228 7272 -424 1 906 7293 87 9 18 chr5 42113098 42113751 -110423508 + L1_Mm LINE L1 4804 5462 -421 1 906 1068 116 0 0 chr5 42113751 42113897 -110423362 + B1_Mus1 SINE Alu 3 148 0 1 906 7293 87 9 18 chr5 42113897 42114246 -110423013 + L1_Mm LINE L1 5463 5797 -86 1 906 3358 19 0 0 chr5 42114271 42114644 -110422615 - L1Md_T LINE L1 0 5883 5511 1 906 5424 64 0 0 chr5 42114644 42115316 -110421943 + L1Md_T LINE L1 5911 6582 0 1 906 6224 63 3 3 chr5 42115313 42116097 -110421162 + L1_Mus2 LINE L1 5783 6566 0 1 906 1251 127 9 27 chr5 42116113 42116332 -110420927 + Lx2B LINE L1 6786 7000 0 1 906 448 214 18 147 chr5 42116334 42116430 -110420829 + Lx7 LINE L1 7260 7334 -362 1 906 180 0 0 0 chr5 42116430 42116450 -110420809 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 906 448 214 18 147 chr5 42116450 42116523 -110420736 + Lx7 LINE L1 7335 7407 -289 1 906 536 0 16 0 chr5 42116523 42116587 -110420672 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 906 415 256 38 37 chr5 42116608 42116778 -110420481 + Lx7 LINE L1 7549 7696 0 1 906 212 186 0 23 chr5 42116795 42116839 -110420420 + GA-rich Low_complexity Low_complexity 2 44 0 2 906 521 287 14 0 chr5 42117738 42117881 -110419378 - B1_Mur1 SINE Alu 0 149 5 2 906 283 237 112 51 chr5 42118254 42118352 -110418907 + B1F SINE Alu 12 115 -34 2 906 191 204 0 20 chr5 42118355 42118405 -110418854 + GA-rich Low_complexity Low_complexity 1 49 0 2 906 324 0 0 0 chr5 42119183 42119219 -110418040 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 906 784 62 221 0 chr5 42119512 42119625 -110417634 + B1_Mus2 SINE Alu 1 138 -9 2 906 194 0 39 0 chr5 42119625 42119651 -110417608 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 906 361 293 0 0 chr5 42119776 42119858 -110417401 + ID4_ SINE ID 2 83 0 2 906 180 0 0 0 chr5 42119870 42119890 -110417369 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 906 672 102 0 0 chr5 42120074 42120172 -110417087 + (TTCC)n Simple_repeat Simple_repeat 4 101 0 2 906 233 213 143 36 chr5 42120872 42120984 -110416275 - Lx8 LINE L1 -9 7464 7341 2 906 254 29 29 0 chr5 42121983 42122018 -110415241 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 2 906 498 60 71 0 chr5 42123078 42123162 -110414097 - L1_Mus3 LINE L1 -3 6635 6546 2 906 571 247 45 75 chr5 42123923 42124124 -110413135 + B3A SINE B2 3 197 -1 2 906 249 349 0 0 chr5 42124430 42124493 -110412766 - RSINE1 SINE B4 -2 163 101 2 906 264 30 0 0 chr5 42124511 42124544 -110412715 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 906 800 244 76 0 chr5 42124558 42124755 -110412504 - B3 SINE B2 -4 212 1 2 906 1178 75 6 11 chr5 42124759 42124934 -110412325 + L1Md_F2 LINE L1 6405 6578 -4 2 906 218 275 0 14 chr5 42125070 42125140 -110412119 + (CAAGA)n Simple_repeat Simple_repeat 2 70 0 2 906 231 170 0 0 chr5 42125770 42125817 -110411442 + CT-rich Low_complexity Low_complexity 2 48 0 2 906 237 239 0 130 chr5 42126277 42126354 -110410905 + B3A SINE B2 27 93 -105 2 906 766 174 79 7 chr5 42127133 42127272 -110409987 + B1_Mur4 SINE Alu 2 150 0 2 906 549 267 0 0 chr5 42127275 42127421 -110409838 - MER2 DNA MER2_type -56 289 144 2 906 537 231 0 0 chr5 42127525 42127633 -110409626 + B3 SINE B2 3 110 -106 2 906 630 243 20 20 chr5 42127655 42127802 -110409457 + B1_Mur1 SINE Alu 3 149 0 2 906 26 30 0 0 chr5 42128136 42128169 -110409090 + AT_rich Low_complexity Low_complexity 1 33 0 2 906 489 298 14 48 chr5 42128429 42128637 -110408622 - AmnSINE1 SINE SINE -174 401 201 2 906 191 62 62 0 chr5 42129928 42129960 -110407299 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 2 906 418 191 8 17 chr5 42133370 42133487 -110403772 + CT-rich Low_complexity Low_complexity 1 116 0 2 906 477 0 0 0 chr5 42136059 42136112 -110401147 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 906 197 159 0 22 chr5 42136449 42136494 -110400765 + GA-rich Low_complexity Low_complexity 4 47 0 2 906 216 0 0 0 chr5 42137088 42137112 -110400147 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 906 570 246 206 16 chr5 42138401 42138653 -110398606 + Lx8 LINE L1 7168 7467 -6 2 906 292 330 110 45 chr5 42139071 42139271 -110397988 - MIR SINE MIR -16 246 34 2 906 673 109 4 1 chr5 42140417 42140524 -110396735 - B1_Mus1 SINE Alu -10 110 1 2 906 400 141 0 105 chr5 42140440 42140535 -110396724 - MT2B LTR ERVL -361 240 156 2 906 352 279 100 8 chr5 42142062 42142192 -110395067 + MIRc SINE MIR 71 212 -56 2 906 423 0 0 0 chr5 42142262 42142309 -110394950 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 906 207 200 25 0 chr5 42143064 42143104 -110394155 + (CTTG)n Simple_repeat Simple_repeat 2 42 0 2 906 387 0 0 0 chr5 42143781 42143824 -110393435 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 906 246 95 0 0 chr5 42144728 42144770 -110392489 + (T)n Simple_repeat Simple_repeat 1 42 0 2 906 510 103 0 0 chr5 42145064 42145151 -110392108 + (T)n Simple_repeat Simple_repeat 1 87 0 2 906 189 0 0 0 chr5 42146228 42146249 -110391010 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 906 250 317 83 14 chr5 42147296 42147440 -110389819 - MamRep4096 DNA hAT? -37 389 236 2 906 25 0 0 0 chr5 42147486 42147511 -110389748 + AT_rich Low_complexity Low_complexity 1 25 0 2 906 1560 86 0 60 chr5 42147511 42147745 -110389514 - L1_Mus1 LINE L1 -2 6565 6346 2 906 408 20 0 0 chr5 42149389 42149438 -110387821 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 906 297 0 0 0 chr5 42149739 42149772 -110387487 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 906 21 0 0 0 chr5 42150435 42150456 -110386803 + AT_rich Low_complexity Low_complexity 1 21 0 2 906 578 70 29 20 chr5 42151130 42151232 -110386027 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 2 906 1335 28 6 22 chr5 42151930 42152112 -110385147 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2 906 204 301 64 52 chr5 42152661 42152833 -110384426 - MER91A DNA Tip100 -17 179 6 2 906 657 0 0 0 chr5 42158301 42158374 -110378885 + (TTCTC)n Simple_repeat Simple_repeat 1 73 0 2 906 291 28 0 0 chr5 42160243 42160279 -110376980 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 2 906 264 242 137 6 chr5 42160444 42160534 -110376725 - B1_Mus2 SINE Alu -48 101 1 2 906 1015 299 74 7 chr5 42160660 42161112 -110376147 - L1M3 LINE L1 -482 5689 5203 2 906 1584 194 32 18 chr5 42161310 42161652 -110375607 - ORR1C1 LTR MaLR -3 375 29 2 906 3316 38 5 2 chr5 42161746 42162141 -110375118 + MTA_Mm LTR MaLR 1 396 0 2 906 402 21 0 0 chr5 42162235 42162282 -110374977 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 906 303 282 0 13 chr5 42162373 42162452 -110374807 - ID4_ SINE ID -1 82 5 2 906 10626 13 0 0 chr5 42163437 42165311 -110371948 - L1Md_A LINE L1 0 6582 4709 2 906 393 22 0 0 chr5 42165507 42165553 -110371706 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 906 182 62 31 0 chr5 42165754 42165786 -110371473 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2 906 732 256 106 0 chr5 42165810 42166037 -110371222 + MTEb LTR MaLR 1 251 -128 2 906 908 101 7 0 chr5 42166281 42166419 -110370840 + (TCCC)n Simple_repeat Simple_repeat 4 142 0 2 906 352 286 30 53 chr5 42166454 42166587 -110370672 + L1ME3A LINE L1 5744 5873 -300 2 906 283 327 49 74 chr5 42166615 42166777 -110370482 - MIRc SINE MIR -19 249 89 2 906 323 289 20 49 chr5 42167538 42167640 -110369619 - RSINE1 SINE B4 -42 123 25 2 906 558 281 75 24 chr5 42167828 42168080 -110369179 - Ricksha_c DNA MuDR -1157 891 627 2 906 328 225 87 35 chr5 42168417 42168532 -110368727 - ERVL-int LTR ERVL -93 5621 5501 2 906 521 244 0 11 chr5 42168536 42168718 -110368541 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 906 1305 259 174 19 chr5 42168728 42169256 -110368003 - ERVL-int LTR ERVL -339 5418 4809 2 906 876 133 0 0 chr5 42169281 42169424 -110367835 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 2 906 4196 167 40 83 chr5 42169477 42170281 -110366978 + RMER19B LTR ERVK 1 768 -134 2 906 1170 75 0 7 chr5 42170281 42170429 -110366830 - B1_Mus1 SINE Alu -1 147 1 2 906 4196 167 40 83 chr5 42170429 42170551 -110366708 + RMER19B LTR ERVK 769 887 -15 2 906 2509 107 221 14 chr5 42170551 42171180 -110366079 + Lx2A LINE L1 6205 6963 -45 2 906 492 121 0 21 chr5 42171169 42171262 -110365997 + Lx2A LINE L1 6918 7008 0 2 906 1960 275 115 25 chr5 42171323 42172012 -110365247 - ERVL-int LTR ERVL -2504 3253 2503 2 906 1134 243 30 73 chr5 42172013 42172412 -110364847 + RLTR14 LTR ERV1 1 382 0 2 906 1039 213 108 0 chr5 42172424 42172508 -110364751 - RLTR20C LTR ERVK 0 534 446 2 906 561 15 0 0 chr5 42172508 42172574 -110364685 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 906 1039 213 108 0 chr5 42172574 42172747 -110364512 - RLTR20C LTR ERVK -89 445 250 2 906 3728 131 8 35 chr5 42172756 42173412 -110363847 - RLTR26 LTR ERVK -3 639 2 2 906 992 184 51 19 chr5 42173423 42173652 -110363607 - RLTR20C LTR ERVK -323 218 5 2 906 308 296 0 0 chr5 42173661 42173742 -110363517 - ERVL-int LTR ERVL -3266 2491 2411 2 906 503 219 25 0 chr5 42173752 42173871 -110363388 + MTEa LTR MaLR 250 371 -8 2 906 1248 284 54 52 chr5 42173877 42174319 -110362940 - ERVL-int LTR ERVL -3532 2182 1740 2 906 436 275 35 14 chr5 42174315 42174459 -110362800 - ERVL-int LTR ERVL -3243 2242 2096 2 906 308 57 0 54 chr5 42174460 42174516 -110362743 + (T)n Simple_repeat Simple_repeat 1 53 0 2 906 1582 292 70 65 chr5 42174530 42174923 -110362336 - ERVL-int LTR ERVL -4019 1738 1328 2 906 3127 69 8 0 chr5 42174923 42175316 -110361943 + MTA_Mm LTR MaLR 1 396 0 2 906 1582 292 70 65 chr5 42175316 42175597 -110361662 - ERVL-int LTR ERVL -4430 1327 1061 2 906 490 309 76 27 chr5 42175657 42175920 -110361339 - ERVL-int LTR ERVL -4852 862 587 2 906 613 267 75 37 chr5 42176664 42176851 -110360408 - B3A SINE B2 -2 196 3 2 906 716 177 85 0 chr5 42176863 42176993 -110360266 - B1_Mur2 SINE Alu -8 141 1 2 906 457 217 200 54 chr5 42178133 42178318 -110358941 - B3 SINE B2 -4 212 1 2 906 25 0 0 0 chr5 42178788 42178813 -110358446 + AT_rich Low_complexity Low_complexity 1 25 0 2 906 224 270 11 0 chr5 42178852 42178941 -110358318 + A-rich Low_complexity Low_complexity 6 95 0 2 906 34 0 0 0 chr5 42179578 42179612 -110357647 + AT_rich Low_complexity Low_complexity 1 34 0 2 906 797 157 361 0 chr5 42180670 42180836 -110356423 - URR1A DNA MER1_type 0 226 1 2 906 673 238 99 52 chr5 42180977 42181190 -110356069 - ID_B1 SINE B4 0 224 2 2 906 207 100 0 0 chr5 42185512 42185542 -110351717 + (TCC)n Simple_repeat Simple_repeat 2 31 0 2 906 302 292 31 44 chr5 42186508 42186747 -110350512 + B4 SINE B4 9 292 0 2 906 419 285 106 66 chr5 42187364 42187638 -110349621 + RLTR12B LTR ERVK 19 303 -225 2 906 1001 134 42 61 chr5 42187866 42188080 -110349179 - Lx LINE L1 -29 6625 6416 2 906 849 289 54 36 chr5 42189870 42189958 -110347301 + B4A SINE B4 8 96 -196 2 906 3183 75 0 0 chr5 42189958 42190358 -110346901 + MTB LTR MaLR 1 400 0 2 906 849 289 54 36 chr5 42190358 42190549 -110346710 + B4A SINE B4 97 292 0 2 906 3136 35 0 18 chr5 42192512 42192896 -110344363 - L1Md_F2 LINE L1 -4 6578 6202 2 906 1734 299 78 18 chr5 42193410 42194074 -110343185 + Lx8 LINE L1 6633 7336 -137 2 906 250 204 50 79 chr5 42194073 42194174 -110343085 - L1MC4 LINE L1 -1302 6740 6643 3 906 419 256 65 24 chr5 42194198 42194366 -110342893 + L1MA6 LINE L1 6029 6203 -97 3 906 333 0 0 0 chr5 42194379 42194416 -110342843 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 3 906 21 36 0 0 chr5 42194928 42194956 -110342303 + AT_rich Low_complexity Low_complexity 1 28 0 3 906 549 0 0 0 chr5 42196645 42196706 -110340553 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 3 906 235 256 44 44 chr5 42196766 42196856 -110340403 + PB1D10 SINE Alu 28 117 0 3 906 273 261 160 0 chr5 42197436 42197555 -110339704 - MER3 DNA MER1_type -59 150 13 3 906 467 214 120 0 chr5 42200339 42200456 -110336803 + B1F1 SINE Alu 12 142 -7 3 906 202 222 0 22 chr5 42202598 42202644 -110334615 + GA-rich Low_complexity Low_complexity 2 46 0 3 906 299 253 0 107 chr5 42203022 42203106 -110334153 - ID SINE ID -147 77 3 3 906 873 305 124 10 chr5 42203232 42203546 -110333713 - ORR1E LTR MaLR -2 357 8 3 906 509 311 22 11 chr5 42203954 42204136 -110333123 + B3A SINE B2 2 185 -13 3 906 207 69 0 0 chr5 42204163 42204192 -110333067 + (A)n Simple_repeat Simple_repeat 1 29 0 3 907 779 137 284 6 chr5 42206238 42206407 -110330852 - B3 SINE B2 0 216 1 3 907 1030 146 144 35 chr5 42206407 42206559 -110330700 - Lx9 LINE L1 -1 7643 7477 3 907 210 37 0 0 chr5 42206559 42206586 -110330673 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 907 1030 146 144 35 chr5 42206586 42206689 -110330570 - Lx9 LINE L1 -168 7476 7360 3 907 2327 72 216 0 chr5 42214829 42215028 -110322231 + BGLII_Mus LTR ERVK 1 256 -166 3 907 213 39 0 0 chr5 42215028 42215054 -110322205 + (GGA)n Simple_repeat Simple_repeat 2 27 0 3 907 2327 72 216 0 chr5 42215054 42215201 -110322058 + BGLII_Mus LTR ERVK 257 421 -1 3 907 910 223 19 5 chr5 42215683 42215895 -110321364 + B3 SINE B2 2 216 0 3 907 290 306 0 0 chr5 42216532 42216604 -110320655 + RSINE1 SINE B4 1 72 -93 3 907 1888 272 15 12 chr5 42216613 42217093 -110320166 + Lx8 LINE L1 6225 6705 -768 3 907 269 319 11 0 chr5 42217135 42217226 -110320033 + Lx8 LINE L1 6705 6796 -677 3 907 341 238 42 0 chr5 42217241 42217326 -110319933 + B1F1 SINE Alu 1 89 -31 3 907 232 333 46 0 chr5 42217354 42217441 -110319818 + Lx8 LINE L1 6826 6916 -557 3 907 26 0 0 0 chr5 42217450 42217476 -110319783 + AT_rich Low_complexity Low_complexity 1 26 0 3 907 419 237 10 0 chr5 42217493 42217590 -110319669 - B1_Mur3 SINE Alu -12 137 40 3 907 584 208 200 11 chr5 42218696 42218876 -110318383 + B3 SINE B2 3 216 0 3 907 874 151 134 5 chr5 42219775 42219961 -110317298 + URR1A DNA MER1_type 16 225 -1 3 907 342 340 62 56 chr5 42220530 42220692 -110316567 - MER57E1 LTR ERV1 -207 165 3 3 907 677 196 65 7 chr5 42220807 42220946 -110316313 - B1_Mur2 SINE Alu 0 149 3 3 907 206 333 12 12 chr5 42221450 42221535 -110315724 + MIRb SINE MIR 19 103 -165 3 907 377 263 109 29 chr5 42222121 42222258 -110315001 - B1F SINE Alu -1 148 1 3 907 2693 61 0 14 chr5 42224089 42224457 -110312802 + L1Md_F2 LINE L1 6227 6582 0 3 907 2693 61 0 14 chr5 42224457 42224470 -110312789 + L1Md_F2 LINE L1 6561 6572 -10 3 907 327 266 38 115 chr5 42226673 42226830 -110310429 + B1F SINE Alu 4 148 -1 3 907 297 230 300 0 chr5 42226846 42226946 -110310313 + B1F1 SINE Alu 3 132 -17 3 907 242 346 0 13 chr5 42226954 42227033 -110310226 + ID4_ SINE ID 6 83 0 3 907 517 227 127 15 chr5 42227368 42227502 -110309757 + B1_Mur3 SINE Alu 1 149 0 3 907 213 65 0 0 chr5 42227535 42227566 -110309693 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 907 302 250 62 12 chr5 42227648 42227729 -110309530 + RSINE1 SINE B4 9 93 -72 3 907 217 204 0 39 chr5 42230344 42230395 -110306864 + A-rich Low_complexity Low_complexity 2 50 0 3 907 437 196 243 0 chr5 42230419 42230526 -110306733 + B1_Mus1 SINE Alu 6 138 -10 3 907 252 0 0 0 chr5 42230526 42230554 -110306705 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 907 456 198 18 36 chr5 42230574 42230684 -110306575 + PB1D9 SINE Alu 3 110 -10 3 907 402 250 93 8 chr5 42231402 42231531 -110305728 + B1F SINE Alu 1 140 -9 3 907 21 0 0 0 chr5 42232943 42232964 -110304295 + AT_rich Low_complexity Low_complexity 1 21 0 3 907 21 36 0 0 chr5 42233428 42233456 -110303803 + AT_rich Low_complexity Low_complexity 1 28 0 3 907 228 86 0 0 chr5 42234347 42234382 -110302877 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 3 907 352 189 51 94 chr5 42234631 42234748 -110302511 + MT2B LTR ERVL 153 264 -337 3 907 972 37 52 0 chr5 42234646 42234782 -110302477 + B1_Mus1 SINE Alu 6 148 0 3 907 282 95 0 0 chr5 42235011 42235053 -110302206 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 3 907 291 169 0 0 chr5 42235324 42235395 -110301864 + (CGG)n Simple_repeat Simple_repeat 2 72 0 3 907 1548 0 0 0 chr5 42235845 42236017 -110301242 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 3 907 1880 179 31 58 chr5 42236226 42236662 -110300597 + MTC LTR MaLR 1 421 0 3 907 489 143 242 40 chr5 42236774 42236898 -110300361 + B1_Mur4 SINE Alu 1 149 -1 3 907 229 208 0 0 chr5 42236900 42236953 -110300306 + A-rich Low_complexity Low_complexity 1 53 0 3 907 225 238 0 0 chr5 42236989 42237031 -110300228 + polypyrimidine Low_complexity Low_complexity 3 44 0 3 907 477 250 0 32 chr5 42237033 42237157 -110300102 - PB1D9 SINE Alu 0 120 1 3 907 795 156 10 101 chr5 42237443 42237650 -110299609 + B2_Mm2 SINE B2 4 191 -4 3 907 21 36 0 0 chr5 42237650 42237678 -110299581 + AT_rich Low_complexity Low_complexity 1 28 0 3 907 373 343 36 48 chr5 42237842 42238093 -110299166 - Charlie2a DNA MER1_type -2035 826 579 3 907 24724 108 27 16 chr5 42238104 42243019 -110294240 - Lx4A LINE L1 -1 7057 2072 3 907 466 253 122 33 chr5 42243036 42243216 -110294043 - B3A SINE B2 -2 196 1 3 907 233 240 135 0 chr5 42243570 42243666 -110293593 + Tigger16b DNA Tigger 201 309 -28 3 907 189 0 0 0 chr5 42243699 42243720 -110293539 + (GA)n Simple_repeat Simple_repeat 1 21 0 3 907 233 274 148 19 chr5 42244070 42244178 -110293081 + MER3 DNA MER1_type 1 122 -87 3 907 4389 118 71 19 chr5 42245492 42245517 -110291742 - L1_Mur2 LINE L1 -3790 2087 2050 3 907 1026 44 0 0 chr5 42245517 42245653 -110291606 + (TG)n Simple_repeat Simple_repeat 2 137 0 3 907 4389 114 68 12 chr5 42245653 42246777 -110290482 - L1_Mur2 LINE L1 -3828 2049 867 3 907 237 86 0 0 chr5 42246784 42246819 -110290440 - RMER19C LTR ERVK -576 35 1 3 907 1821 160 12 24 chr5 42246819 42247111 -110290148 + ORR1B2 LTR MaLR 40 330 -37 3 907 2380 116 116 104 chr5 42247111 42247552 -110289707 + RLTR41 LTR ERV1 1 446 0 3 907 1821 160 12 24 chr5 42247552 42247567 -110289692 + ORR1B2 LTR MaLR 331 342 -25 3 907 5599 130 3 2 chr5 42247567 42248415 -110288844 + Lx2 LINE L1 6149 6997 0 3 907 1821 160 12 24 chr5 42248415 42248438 -110288821 + ORR1B2 LTR MaLR 343 367 0 3 907 996 217 5 14 chr5 42248438 42248648 -110288611 + ORR1B2-int LTR MaLR 1 208 -1301 3 907 558 182 88 36 chr5 42248616 42248753 -110288506 + ORR1B2-int LTR MaLR 1031 1174 -335 3 907 271 289 137 26 chr5 42249365 42249518 -110287741 + Lx8 LINE L1 7265 7434 -39 3 907 728 239 77 0 chr5 42250730 42250926 -110286333 + MTC-int LTR MaLR 866 1058 -200 3 907 745 175 16 0 chr5 42250993 42251119 -110286140 - B1_Mur3 SINE Alu -21 128 1 3 907 320 182 108 9 chr5 42251119 42251229 -110286030 + MTC-int LTR MaLR 1134 1254 -4 3 907 731 98 27 0 chr5 42251277 42251378 -110285881 + MTC LTR MaLR 1 104 -317 3 907 3890 151 62 47 chr5 42251378 42252313 -110284946 + RMER17B LTR ERVK 1 958 0 3 907 1406 171 125 0 chr5 42252313 42252353 -110284906 + MTC LTR MaLR 99 145 -276 3 907 297 0 0 0 chr5 42252353 42252386 -110284873 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 907 1406 171 125 0 chr5 42252386 42252632 -110284627 + MTC LTR MaLR 146 420 -1 3 907 316 314 9 9 chr5 42252632 42252721 -110284538 + MTD LTR MaLR 43 131 -288 3 907 13559 53 3 0 chr5 42252761 42255120 -110282139 - L1Md_F2 LINE L1 -2 6580 4216 3 907 338 337 76 17 chr5 42256154 42256326 -110280933 - MER34-int LTR ERV1 -7121 1086 905 3 907 1045 202 0 5 chr5 42256589 42256778 -110280481 - Lx7 LINE L1 -727 6969 6782 3 907 1722 127 43 58 chr5 42256781 42257107 -110280152 - ORR1A4 LTR MaLR -8 321 1 3 907 3012 183 26 48 chr5 42257107 42257688 -110279571 - Lx6 LINE L1 -683 6777 6210 3 907 2936 74 165 7 chr5 42257688 42258136 -110279123 + MURVY-LTR LTR ERV1 1 519 0 3 907 3012 183 26 48 chr5 42258136 42258175 -110279084 - Lx6 LINE L1 -1251 6209 6171 3 907 1995 210 7 14 chr5 42258186 42258612 -110278647 - Lx6 LINE L1 -7008 720 298 3 907 933 127 7 0 chr5 42258685 42258827 -110278432 + L1_Mur2 LINE L1 4426 4568 -1309 3 907 513 158 0 0 chr5 42258821 42258908 -110278351 + Lx4B LINE L1 6241 6326 -650 3 907 433 77 31 0 chr5 42258908 42258973 -110278286 - ORR1A1-int LTR MaLR -1725 67 1 3 907 702 12 0 0 chr5 42258977 42259063 -110278196 - ORR1A1 LTR MaLR -8 338 253 3 907 795 76 0 0 chr5 42259057 42259176 -110278083 - ORR1A1 LTR MaLR -227 119 1 3 907 2697 180 58 9 chr5 42259176 42259783 -110277476 + Lx4B LINE L1 6323 6956 -44 3 907 26 0 0 0 chr5 42259788 42259814 -110277445 + AT_rich Low_complexity Low_complexity 1 26 0 3 907 183 156 0 0 chr5 42259829 42259861 -110277398 + A-rich Low_complexity Low_complexity 1 32 0 3 907 7125 155 34 30 chr5 42259863 42260033 -110277226 + Lx5 LINE L1 4565 4728 -1149 3 907 360 0 0 0 chr5 42260033 42260073 -110277186 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3 907 7125 167 62 38 chr5 42260073 42262289 -110274970 + Lx5 LINE L1 4729 7050 0 3 907 689 103 0 8 chr5 42262346 42262464 -110274795 + (TC)n Simple_repeat Simple_repeat 1 117 0 3 907 244 326 30 30 chr5 42262487 42262620 -110274639 - MER5B DNA MER1_type -10 168 36 3 907 264 77 0 0 chr5 42262965 42263004 -110274255 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 907 947 123 0 0 chr5 42263004 42263142 -110274117 - B1_Mus1 SINE Alu -10 138 1 3 907 1180 69 0 0 chr5 42264453 42264598 -110272661 + B1_Mus2 SINE Alu 1 145 -2 3 907 296 82 68 0 chr5 42264603 42264676 -110272583 + (CAAA)n Simple_repeat Simple_repeat 2 79 0 3 907 414 266 34 34 chr5 42265260 42265408 -110271851 - ID_B1 SINE B4 0 224 77 3 907 413 0 0 37 chr5 42265558 42265612 -110271647 + (TTA)n Simple_repeat Simple_repeat 3 54 0 3 907 1682 123 50 21 chr5 42265613 42265896 -110271363 - Lx3C LINE L1 -12 6964 6674 3 907 207 69 0 0 chr5 42265983 42266012 -110271247 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 907 309 349 9 9 chr5 42266611 42266721 -110270538 + MLT1A0 LTR MaLR 19 128 -237 4 907 350 329 39 34 chr5 42266922 42267155 -110270104 - L1MB3 LINE L1 -49 6134 5901 4 907 766 234 96 79 chr5 42267176 42267519 -110269740 + MTE2a LTR MaLR 1 349 -30 4 907 776 261 6 0 chr5 42268011 42268172 -110269087 - RSINE1 SINE B4 0 165 4 4 907 25 31 0 0 chr5 42268227 42268259 -110269000 + AT_rich Low_complexity Low_complexity 1 32 0 4 907 32 26 0 0 chr5 42268283 42268322 -110268937 + AT_rich Low_complexity Low_complexity 1 39 0 4 907 506 319 145 19 chr5 42268350 42269008 -110268251 - Lx8 LINE L1 -39 7657 6915 4 907 298 221 59 0 chr5 42269013 42269081 -110268178 - L1M4 LINE L1 -909 5237 5166 4 907 225 0 0 0 chr5 42269317 42269342 -110267917 + (T)n Simple_repeat Simple_repeat 1 25 0 4 907 411 224 13 0 chr5 42269679 42269755 -110267504 - RLTR20C LTR ERVK -10 568 492 4 907 549 44 0 0 chr5 42269755 42269823 -110267436 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 907 1592 172 66 52 chr5 42269829 42270210 -110267049 - RLTR20C LTR ERVK -148 386 1 4 907 302 258 0 110 chr5 42270527 42270627 -110266632 - Lx9 LINE L1 -574 7070 6982 4 907 1982 192 13 48 chr5 42270625 42271108 -110266151 - Lx9 LINE L1 -1713 5931 5430 4 907 343 38 19 19 chr5 42271121 42271175 -110266084 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 4 907 1231 48 0 0 chr5 42271175 42271320 -110265939 - B1_Mus1 SINE Alu -3 145 1 4 907 8907 180 22 74 chr5 42271322 42273984 -110263275 - Lx2B LINE L1 -27 6973 4479 4 907 638 261 16 49 chr5 42274074 42274259 -110263000 + B3A SINE B2 2 180 -18 4 907 206 154 0 25 chr5 42274274 42274314 -110262945 + CT-rich Low_complexity Low_complexity 1 39 0 4 907 22 35 0 0 chr5 42274322 42274351 -110262908 + AT_rich Low_complexity Low_complexity 1 29 0 4 907 669 258 16 0 chr5 42274658 42274840 -110262419 + Lx5 LINE L1 5939 6123 -927 4 907 3891 196 39 16 chr5 42274850 42275638 -110261621 + Lx5 LINE L1 6234 7039 -11 4 907 341 277 51 63 chr5 42275863 42276021 -110261238 + LTR41B LTR ERVL 13 168 -590 4 907 277 226 91 36 chr5 42276488 42276598 -110260661 + LTR41B LTR ERVL 574 689 -69 4 907 1335 63 0 0 chr5 42276897 42277071 -110260188 + (TTCTCC)n Simple_repeat Simple_repeat 2 175 0 4 907 279 0 0 0 chr5 42277071 42277102 -110260157 + (TCC)n Simple_repeat Simple_repeat 3 33 0 4 907 7497 132 16 21 chr5 42277112 42279110 -110258149 - Lx LINE L1 0 6654 4672 4 907 186 43 0 0 chr5 42280542 42280565 -110256694 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 907 251 336 113 24 chr5 42281406 42281619 -110255640 + MER113 DNA MER1_type 155 386 -135 4 907 678 250 0 26 chr5 42281611 42281763 -110255496 - B1_Mur2 SINE Alu 0 149 2 4 907 213 65 0 0 chr5 42283056 42283087 -110254172 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 907 7900 64 0 7 chr5 42283113 42284190 -110253069 - L1_Mus1 LINE L1 0 6567 5499 4 907 299 360 100 0 chr5 42284199 42284299 -110252960 - PB1D10 SINE Alu -5 112 3 4 907 278 244 25 25 chr5 42284546 42284626 -110252633 - MIR SINE MIR -72 190 111 4 907 462 286 60 50 chr5 42285434 42285728 -110251531 - MLT1A0 LTR MaLR 0 390 53 4 907 267 252 85 36 chr5 42285734 42285861 -110251398 + MTEa LTR MaLR 6 142 -237 4 907 683 260 43 75 chr5 42286253 42286507 -110250752 - MLT-int LTR MaLR -16 1719 1474 4 907 3775 150 22 23 chr5 42286584 42287268 -110249991 - L1_Mur3 LINE L1 -346 5534 4852 4 907 2219 96 115 9 chr5 42287274 42287621 -110249638 + MTB_Mm LTR MaLR 16 399 -8 4 907 1483 154 25 35 chr5 42287621 42287903 -110249356 - L1_Mur3 LINE L1 -1030 4850 4572 4 907 3465 123 48 48 chr5 42287888 42288235 -110249024 - L1_Mur3 LINE L1 -4005 1875 1531 4 907 201 39 0 0 chr5 42288235 42288261 -110248998 + (TTAG)n Simple_repeat Simple_repeat 3 28 0 4 907 3465 132 51 31 chr5 42288261 42288753 -110248506 - L1_Mur3 LINE L1 -4350 1530 1018 4 907 2249 236 75 28 chr5 42288754 42289541 -110247718 - L1_Mur3 LINE L1 -6660 1068 64 4 907 367 271 113 30 chr5 42289545 42289678 -110247581 - MLT1A0 LTR MaLR -213 152 9 4 907 2673 170 7 9 chr5 42290528 42290950 -110246309 - MTC LTR MaLR 0 421 1 4 907 4301 112 16 47 chr5 42291020 42291640 -110245619 + MT2B LTR ERVL 1 601 0 4 907 1127 274 57 37 chr5 42291729 42292078 -110245181 - MLT1A0 LTR MaLR 0 365 10 4 907 687 287 74 14 chr5 42292399 42292696 -110244563 - MER33 DNA MER1_type -1 323 9 4 907 762 305 54 67 chr5 42292786 42293069 -110244190 - MLT1B LTR MaLR -2 388 114 4 907 1162 66 0 19 chr5 42293069 42293223 -110244036 - L1_Mus2 LINE L1 -2 6564 6414 4 907 762 305 54 67 chr5 42293223 42293329 -110243930 - MLT1B LTR MaLR -277 113 4 4 907 879 256 49 10 chr5 42293477 42293682 -110243577 - ID_B1 SINE B4 -11 213 1 4 907 567 305 55 5 chr5 42293831 42294032 -110243227 - Lx8 LINE L1 -377 7096 6886 4 907 537 312 36 60 chr5 42294122 42294276 -110242983 + MLT1C LTR MaLR 225 382 -85 4 907 1680 141 72 124 chr5 42294276 42294623 -110242636 + ORR1A4 LTR MaLR 1 329 0 4 907 537 312 36 60 chr5 42294623 42294717 -110242542 + MLT1C LTR MaLR 383 467 0 4 907 1196 258 42 9 chr5 42294988 42295320 -110241939 + MER2 DNA MER2_type 3 345 0 4 907 1864 316 67 71 chr5 42295544 42295636 -110241623 - ORR1E-int LTR MaLR -122 1458 1365 4 907 515 272 120 0 chr5 42295636 42295761 -110241498 - B1_Mur1 SINE Alu -7 142 3 4 907 1864 316 67 71 chr5 42295761 42296539 -110240720 - ORR1E-int LTR MaLR -216 1364 592 4 907 651 130 0 0 chr5 42296599 42296722 -110240537 + (GA)n Simple_repeat Simple_repeat 2 124 0 4 907 1108 307 97 28 chr5 42296855 42297392 -110239867 - ORR1E-int LTR MaLR -1006 574 1 4 907 628 293 103 44 chr5 42297394 42297733 -110239526 - ORR1E LTR MaLR 0 359 1 4 907 1301 41 0 0 chr5 42297792 42297939 -110239320 + B1_Mm SINE Alu 1 147 0 4 907 303 49 0 0 chr5 42297939 42297980 -110239279 + (A)n Simple_repeat Simple_repeat 1 41 0 4 907 1058 72 14 0 chr5 42298270 42298409 -110238850 - B1_Mm SINE Alu 0 147 7 4 907 738 190 12 31 chr5 42298409 42298422 -110238837 - ID_B1 SINE B4 0 224 76 4 907 227 88 0 0 chr5 42298422 42298456 -110238803 + B3A SINE B2 1 34 -164 4 907 1071 248 69 51 chr5 42298621 42299042 -110238217 - MER89 LTR ERV1 -69 490 1 4 907 821 289 9 18 chr5 42299048 42299270 -110237989 - MER58A DNA MER1_type -2 222 3 4 907 329 309 210 0 chr5 42299687 42299868 -110237391 - MLT1L LTR MaLR -223 387 169 4 907 2308 184 11 25 chr5 42300162 42300636 -110236623 - Lx4B LINE L1 -777 6281 5815 4 907 2228 187 36 7 chr5 42300641 42301062 -110236197 + Lx4B LINE L1 6285 6717 -341 4 907 649 255 33 5 chr5 42301211 42301430 -110235829 + Lx4B LINE L1 6700 7037 -21 4 907 225 0 0 0 chr5 42301430 42301455 -110235804 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 4 907 581 0 14 0 chr5 42304308 42304377 -110232882 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 907 232 143 56 14 chr5 42304854 42304925 -110232334 + (TA)n Simple_repeat Simple_repeat 1 74 0 4 907 821 308 90 10 chr5 42305011 42305424 -110231835 + L1ME2 LINE L1 5683 6128 -36 4 907 362 286 104 8 chr5 42305500 42305634 -110231625 - B1F1 SINE Alu 0 149 3 4 907 1939 219 38 59 chr5 42307182 42307461 -110229798 - Lx7 LINE L1 -6 7690 7422 4 907 246 32 0 0 chr5 42307461 42307492 -110229767 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 907 1939 219 38 59 chr5 42307492 42307741 -110229518 - Lx7 LINE L1 -275 7421 7173 4 907 236 274 71 12 chr5 42308218 42308303 -110228956 - L1M5 LINE L1 -335 5829 5740 4 907 804 328 35 24 chr5 42308467 42308807 -110228452 - MLT1A0 LTR MaLR -19 346 3 4 907 5442 209 43 6 chr5 42308906 42310011 -110227248 - Lx5 LINE L1 -1 7049 5904 4 907 472 218 15 0 chr5 42311055 42311188 -110226071 + CT-rich Low_complexity Low_complexity 3 137 0 4 907 326 42 0 20 chr5 42311220 42311269 -110225990 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 907 560 288 157 4 chr5 42311276 42311512 -110225747 - B4A SINE B4 -20 272 1 4 907 425 256 24 59 chr5 42312115 42312285 -110224974 - Lx8 LINE L1 -43 7430 7267 4 907 266 264 14 0 chr5 42313107 42313179 -110224080 + CT-rich Low_complexity Low_complexity 3 75 0 4 907 575 271 52 13 chr5 42313179 42313411 -110223848 - L1MA9 LINE L1 0 6312 6072 4 907 2068 171 62 6 chr5 42313480 42313834 -110223425 + ORR1D1 LTR MaLR 1 374 0 4 907 306 311 146 43 chr5 42315061 42315288 -110221971 - MLT1C LTR MaLR -134 333 83 4 907 3266 50 44 0 chr5 42315288 42315671 -110221588 + MTB LTR MaLR 1 400 0 4 907 306 311 146 43 chr5 42315671 42315745 -110221514 - MLT1C LTR MaLR -385 82 1 4 907 21 0 0 0 chr5 42315764 42315785 -110221474 + AT_rich Low_complexity Low_complexity 1 21 0 4 907 553 305 37 79 chr5 42315867 42315934 -110221325 + B4A SINE B4 83 141 -151 4 907 2865 162 127 2 chr5 42315934 42316454 -110220805 + RMER4B LTR ERVK 1 585 0 4 907 553 305 37 79 chr5 42316454 42316575 -110220684 + B4A SINE B4 142 263 -29 4 907 1819 108 73 73 chr5 42317155 42317484 -110219775 + ORR1A4 LTR MaLR 1 329 0 4 907 303 93 0 0 chr5 42317535 42317578 -110219681 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 4 907 2942 83 5 15 chr5 42317710 42318100 -110219159 - L1_Mus3 LINE L1 -10 6628 6243 4 907 516 376 16 0 chr5 42318439 42318689 -110218570 - MIRc SINE MIR -8 260 7 4 907 237 346 75 70 chr5 42319771 42319998 -110217261 + MLT1K LTR MaLR 202 429 -166 4 907 277 187 51 39 chr5 42320007 42320085 -110217174 - Lx8 LINE L1 -3 7470 7392 4 907 870 199 190 16 chr5 42320732 42320916 -110216343 + B3 SINE B2 1 216 0 4 907 205 279 0 0 chr5 42322357 42322418 -110214841 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 907 402 274 238 42 chr5 42322574 42322860 -110214399 - MER21B LTR ERV1 -52 811 470 4 907 330 182 0 0 chr5 42322932 42322998 -110214261 + (TCTG)n Simple_repeat Simple_repeat 2 67 0 4 907 343 119 30 0 chr5 42323050 42323117 -110214142 + (TCTA)n Simple_repeat Simple_repeat 3 71 0 4 907 643 305 117 30 chr5 42323298 42323562 -110213697 - MLT2B3 LTR ERVL -44 626 340 4 907 189 213 0 0 chr5 42323573 42323620 -110213639 + GA-rich Low_complexity Low_complexity 2 48 0 4 907 419 0 20 0 chr5 42323647 42323698 -110213561 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 4 907 310 256 35 47 chr5 42323699 42323785 -110213474 - MLT2B3 LTR ERVL -422 295 211 4 907 396 0 0 0 chr5 42323799 42323843 -110213416 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 907 660 383 59 16 chr5 42323908 42324229 -110213030 - MER21B LTR ERV1 -431 432 98 4 907 3138 56 5 0 chr5 42324425 42324799 -110212460 - L1Md_F2 LINE L1 -2 6580 6205 4 907 4871 45 35 0 chr5 42324799 42325537 -110211722 + L1Md_F2 LINE L1 5267 6021 -561 4 907 675 90 0 0 chr5 42327624 42327724 -110209535 + (TCCC)n Simple_repeat Simple_repeat 4 103 0 4 907 338 274 97 0 chr5 42328262 42328375 -110208884 - LTR16A LTR ERVL -96 355 232 4 907 293 47 0 23 chr5 42328727 42328771 -110208488 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 907 36 0 0 0 chr5 42329136 42329172 -110208087 + AT_rich Low_complexity Low_complexity 1 36 0 5 907 415 313 35 9 chr5 42329177 42329293 -110207966 - PB1D7 SINE Alu 0 120 2 5 907 577 318 60 24 chr5 42329302 42329634 -110207625 - L1MD1 LINE L1 0 6242 5899 5 907 628 220 132 59 chr5 42329645 42329949 -110207310 - L1MD LINE L1 -1379 4767 4442 5 907 1168 225 7 28 chr5 42329985 42330273 -110206986 + Lx9 LINE L1 7231 7512 -132 5 907 627 201 17 111 chr5 42330274 42330509 -110206750 + Lx9 LINE L1 7417 7629 -15 5 907 208 143 0 0 chr5 42332295 42332330 -110204929 + (TAA)n Simple_repeat Simple_repeat 1 35 0 5 907 306 0 0 0 chr5 42332387 42332421 -110204838 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 907 527 327 112 73 chr5 42334132 42334514 -110202745 - LTR16B2 LTR ERVL -34 428 26 5 907 1752 205 17 3 chr5 42334514 42334867 -110202392 - Lx LINE L1 -1 6653 6296 5 907 527 327 112 73 chr5 42334867 42334896 -110202363 - LTR16B2 LTR ERVL -437 25 1 5 908 183 336 167 8 chr5 42337176 42337308 -110199951 - MIR SINE MIR -26 236 84 5 908 183 291 120 45 chr5 42337415 42337548 -110199711 + MIRb SINE MIR 126 268 0 5 908 311 324 19 10 chr5 42337944 42338047 -110199212 + GA-rich Low_complexity Low_complexity 2 105 0 5 908 451 263 106 41 chr5 42338272 42338490 -110198769 - MER20B DNA MER1_type -29 754 523 5 908 465 349 72 43 chr5 42338515 42338862 -110198397 - MLT1G1 LTR MaLR -222 357 1 5 908 319 227 107 18 chr5 42338976 42339088 -110198171 - MIRc SINE MIR -49 219 98 5 908 746 337 177 57 chr5 42340185 42340465 -110196794 - L2 LINE L2 -353 3066 2814 5 908 1104 67 0 0 chr5 42340465 42340600 -110196659 - B1_Mm SINE Alu -12 135 1 5 908 746 337 177 57 chr5 42340600 42342358 -110194901 - L2 LINE L2 -606 2813 784 5 908 230 247 152 33 chr5 42342969 42343061 -110194198 - Tigger16a DNA Tigger -49 884 782 5 908 213 310 83 41 chr5 42343743 42343864 -110193395 + MIRb SINE MIR 23 148 -120 5 908 204 40 0 0 chr5 42345390 42345415 -110191844 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 908 428 294 68 0 chr5 42345645 42345791 -110191468 - RMER15 LTR ERVL -14 561 406 5 908 2768 27 12 0 chr5 42345836 42346170 -110191089 - ORR1A0 LTR MaLR -8 338 1 5 908 14166 44 14 1 chr5 42346170 42347938 -110189321 - ORR1A0-int LTR MaLR 0 1792 2 5 908 2922 35 3 3 chr5 42347939 42348285 -110188974 - ORR1A0 LTR MaLR 0 346 1 5 908 337 235 58 12 chr5 42348295 42348381 -110188878 - RMER15 LTR ERVL -210 365 276 5 908 267 267 138 69 chr5 42348525 42348670 -110188589 - MLT1A1 LTR MaLR -58 350 196 5 908 2033 87 17 7 chr5 42348751 42349040 -110188219 - L1Md_F2 LINE L1 -12 6570 6279 5 908 338 279 58 10 chr5 42349169 42349416 -110187843 - Lx8 LINE L1 -1638 6006 5700 5 908 180 77 0 0 chr5 42349568 42349594 -110187665 + (CCCA)n Simple_repeat Simple_repeat 3 28 0 5 908 300 263 104 88 chr5 42349973 42350098 -110187161 + B1F SINE Alu 10 136 -13 5 908 628 133 17 0 chr5 42350101 42350221 -110187038 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 5 908 248 254 186 10 chr5 42350256 42350404 -110186855 + MIR SINE MIR 35 204 -58 5 908 270 296 14 14 chr5 42351099 42351171 -110186088 + ID4 SINE ID 11 82 -1 5 908 447 68 0 0 chr5 42351472 42351531 -110185728 + (TCC)n Simple_repeat Simple_repeat 3 61 0 5 908 652 142 0 69 chr5 42351569 42351618 -110185641 + polypyrimidine Low_complexity Low_complexity 100 148 0 5 908 1061 133 0 11 chr5 42351618 42351800 -110185459 + (TCC)n Simple_repeat Simple_repeat 1 180 0 5 908 652 142 0 69 chr5 42351800 42351909 -110185350 + polypyrimidine Low_complexity Low_complexity 1 99 0 5 908 1182 112 0 0 chr5 42351909 42352087 -110185172 + (TTC)n Simple_repeat Simple_repeat 2 179 0 5 908 750 170 89 0 chr5 42352087 42352222 -110185037 - B1_Mur4 SINE Alu -2 148 2 5 908 186 167 0 0 chr5 42353673 42353709 -110183550 + G-rich Low_complexity Low_complexity 6 41 0 5 908 856 111 7 7 chr5 42353760 42353914 -110183345 + (TTCC)n Simple_repeat Simple_repeat 2 155 0 5 908 381 362 25 6 chr5 42353921 42354082 -110183177 - RMER15 LTR ERVL -65 510 347 5 908 270 288 184 32 chr5 42356160 42356350 -110180909 + MIRc SINE MIR 3 221 -47 5 908 270 160 0 0 chr5 42356375 42356425 -110180834 + CT-rich Low_complexity Low_complexity 2 51 0 5 908 679 291 122 37 chr5 42356992 42357022 -110180237 + MTEa LTR MaLR 1 33 -346 5 908 804 131 345 0 chr5 42357022 42357190 -110180069 - URR1A DNA MER1_type 0 226 1 5 908 679 276 100 34 chr5 42357190 42357507 -110179752 + MTEa LTR MaLR 34 358 -1 5 908 209 284 160 20 chr5 42358786 42358915 -110178344 + MIRb SINE MIR 21 165 -111 5 908 540 111 0 0 chr5 42358915 42358996 -110178263 + (TATG)n Simple_repeat Simple_repeat 3 83 0 5 908 342 80 0 0 chr5 42359159 42359209 -110178050 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 908 293 265 88 39 chr5 42359315 42359417 -110177842 + MIRc SINE MIR 90 196 -72 5 908 514 299 62 62 chr5 42359904 42360456 -110176803 + L1MC5 LINE L1 6611 7162 -799 5 908 388 241 152 17 chr5 42360500 42360618 -110176641 + B1F SINE Alu 1 134 -15 5 908 299 262 52 53 chr5 42361208 42361410 -110175849 - L1MB8 LINE L1 -13 6171 5972 5 908 1117 102 0 0 chr5 42361656 42361803 -110175456 - B1_Mus2 SINE Alu 0 147 1 5 908 198 0 0 0 chr5 42361958 42361980 -110175279 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 5 908 442 311 115 23 chr5 42362537 42362719 -110174540 + B3 SINE B2 1 197 -1 5 908 300 89 0 43 chr5 42363388 42363435 -110173824 + PB1D9 SINE Alu 15 59 -61 5 908 800 222 0 11 chr5 42363437 42363619 -110173640 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 5 908 753 246 0 0 chr5 42363530 42363709 -110173550 + (CAGG)n Simple_repeat Simple_repeat 2 180 0 5 908 835 200 0 22 chr5 42363720 42363899 -110173360 + (CAGAGA)n Simple_repeat Simple_repeat 2 176 0 5 908 476 194 41 0 chr5 42363899 42363997 -110173262 + B1_Mur2 SINE Alu 42 143 -6 5 908 528 297 70 27 chr5 42364535 42364722 -110172537 - MER20 DNA MER1_type -18 201 7 5 908 587 299 78 37 chr5 42366181 42366424 -110170835 - MER57D LTR ERV1 0 411 159 5 908 559 266 67 38 chr5 42366551 42366867 -110170392 - L1M4 LINE L1 -3536 2610 2286 5 908 833 261 19 10 chr5 42366898 42367107 -110170152 - B3 SINE B2 -4 212 2 5 908 233 325 0 0 chr5 42367404 42367484 -110169775 - L1MEg LINE L1 -2555 3764 3685 5 908 404 152 160 59 chr5 42367595 42367792 -110169467 - B2_Mm2 SINE B2 -6 210 47 5 908 1200 119 23 0 chr5 42367823 42368000 -110169259 - B2_Mm2 SINE B2 -13 182 2 5 908 412 285 166 28 chr5 42368177 42368678 -110168581 - L1MEg LINE L1 -2885 3434 2865 5 908 1344 241 60 57 chr5 42368708 42368950 -110168309 + ORR1D2 LTR MaLR 1 257 -113 5 908 1701 189 63 33 chr5 42368950 42369312 -110167947 + ORR1D1 LTR MaLR 1 373 -1 5 908 1344 241 60 57 chr5 42369312 42369438 -110167821 + ORR1D2 LTR MaLR 258 370 0 5 908 259 288 55 0 chr5 42369682 42369755 -110167504 + ID_B1 SINE B4 146 222 -2 5 908 1417 238 72 3 chr5 42369806 42370152 -110167107 - ORR1D2 LTR MaLR 0 370 1 5 908 637 280 15 56 chr5 42370314 42370511 -110166748 - B3 SINE B2 -2 214 26 5 908 750 266 10 60 chr5 42371085 42371285 -110165974 - B3 SINE B2 -25 191 2 5 908 375 297 90 38 chr5 42371538 42372027 -110165232 - L1MEg LINE L1 -4684 1731 1135 5 908 664 268 68 10 chr5 42373287 42373479 -110163780 + B3 SINE B2 1 203 -13 5 908 322 219 41 10 chr5 42373523 42373620 -110163639 + (TATG)n Simple_repeat Simple_repeat 1 100 0 5 908 338 228 8 23 chr5 42373632 42373762 -110163497 + (TA)n Simple_repeat Simple_repeat 2 129 0 5 908 330 167 0 0 chr5 42373844 42373904 -110163355 + (TA)n Simple_repeat Simple_repeat 2 61 0 5 908 301 311 86 92 chr5 42373914 42374077 -110163182 - RSINE1 SINE B4 0 165 4 5 908 221 309 140 22 chr5 42374784 42374963 -110162296 - MIRb SINE MIR -66 202 3 5 908 21 0 0 0 chr5 42375540 42375561 -110161698 + AT_rich Low_complexity Low_complexity 1 21 0 5 908 326 267 0 0 chr5 42375668 42375743 -110161516 - BC1_Mm scRNA scRNA -73 79 5 5 908 237 337 63 0 chr5 42375993 42376088 -110161171 - MIRb SINE MIR -118 150 50 5 908 1108 281 77 12 chr5 42376259 42376609 -110160650 + MTD LTR MaLR 1 361 -35 5 908 13946 161 109 50 chr5 42376675 42380896 -110156363 - Lx LINE L1 0 6654 2159 5 908 376 160 245 0 chr5 42380896 42380990 -110156269 + ORR1B2 LTR MaLR 251 367 0 5 908 509 271 127 42 chr5 42380990 42381161 -110156098 + RMER21B LTR ERV1 381 567 -275 5 908 1794 233 25 81 chr5 42381333 42381805 -110155454 - RMER15 LTR ERVL -129 446 1 5 908 280 119 60 0 chr5 42381906 42381973 -110155286 + Lx4A LINE L1 6987 7057 -1 5 908 192 254 29 43 chr5 42381999 42382069 -110155190 - MER5A DNA MER1_type -114 75 7 5 908 203 245 0 0 chr5 42382275 42382324 -110154935 - MIR SINE MIR -62 200 152 5 908 4027 108 28 11 chr5 42384817 42385432 -110151827 + Lx2 LINE L1 6370 6994 -3 5 908 970 172 141 0 chr5 42386730 42386928 -110150331 + URR1A DNA MER1_type 1 226 0 5 908 214 257 35 44 chr5 42387639 42387753 -110149506 + GA-rich Low_complexity Low_complexity 5 117 0 5 908 6914 58 36 8 chr5 42388025 42388907 -110148352 - L1_Mus1 LINE L1 0 6567 5661 5 908 233 209 43 29 chr5 42389161 42389230 -110148029 - Lx8 LINE L1 -9 7464 7395 5 908 1223 216 35 21 chr5 42389355 42389639 -110147620 - ORR1C2 LTR MaLR -2 382 95 5 908 12470 29 2 0 chr5 42389643 42391769 -110145490 - L1Md_T LINE L1 -9 6573 4445 5 908 38021 34 0 0 chr5 42391766 42397052 -110140207 - L1Md_T LINE L1 0 6585 1302 5 908 38893 29 0 0 chr5 42397057 42403901 -110133358 - L1Md_T LINE L1 0 6585 1 5 908 9395 19 1 5 chr5 42403902 42405030 -110132229 - L1Md_T LINE L1 -5411 1316 92 5 908 27513 32 5 10 chr5 42405031 42409101 -110128158 - L1Md_A LINE L1 -1400 4483 441 5 908 509 218 10 0 chr5 42409101 42409202 -110128057 - ORR1C2 LTR MaLR -272 102 1 5 908 4929 76 8 19 chr5 42409265 42409898 -110127361 - L1Md_F2 LINE L1 0 6582 5957 6 908 215 357 62 47 chr5 42409923 42410264 -110126995 + L2 LINE L2 2073 2418 -1001 6 908 1870 270 51 2 chr5 42410278 42410764 -110126495 + MTE-int LTR MaLR 840 1349 -231 6 908 3077 198 50 68 chr5 42410783 42411596 -110125663 - Lx9 LINE L1 -1 7643 6845 6 908 825 161 94 0 chr5 42411598 42411747 -110125512 + Lx9 LINE L1 6675 6837 -807 6 908 558 230 108 36 chr5 42411750 42411917 -110125342 + MTE-int LTR MaLR 1355 1533 -47 6 908 374 310 81 92 chr5 42411951 42412235 -110125024 + ORR1E LTR MaLR 71 351 -8 6 908 315 347 95 65 chr5 42412633 42412895 -110124364 - ORR1E LTR MaLR -13 346 77 6 908 199 368 21 0 chr5 42413343 42413438 -110123821 - MIR3 SINE MIR -14 194 98 6 908 251 326 4 1 chr5 42414313 42414396 -110122863 + MIR SINE MIR 63 147 -61 6 908 1068 149 11 11 chr5 42414539 42414722 -110122537 - L1_Mus3 LINE L1 -4 6634 6452 6 908 555 284 44 39 chr5 42414798 42415003 -110122256 + LTR40a LTR ERVL 312 517 -2 6 908 226 150 24 59 chr5 42415246 42415331 -110121928 + Lx9 LINE L1 7436 7517 -127 6 908 457 191 18 0 chr5 42415338 42415448 -110121811 + (TA)n Simple_repeat Simple_repeat 2 113 0 6 908 203 241 135 94 chr5 42415796 42415892 -110121367 + L2a LINE L2 3286 3385 -41 6 908 263 351 0 41 chr5 42416692 42416790 -110120469 - MER5B DNA MER1_type -82 96 3 6 908 1473 278 21 19 chr5 42416815 42417189 -110120070 + MTE2b LTR MaLR 1 375 -4 6 908 298 301 8 34 chr5 42417345 42417462 -110119797 - Lx8 LINE L1 -7 7466 7353 6 908 3585 268 81 26 chr5 42417487 42418631 -110118628 - Lx8 LINE L1 -54 7419 6213 6 908 1224 170 13 5 chr5 42418736 42418960 -110118299 + URR1A DNA MER1_type 1 226 0 6 908 198 0 0 0 chr5 42419241 42419263 -110117996 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 6 908 6643 179 17 11 chr5 42419429 42420825 -110116434 - Lx4B LINE L1 -9 7049 5543 6 908 36202 35 0 0 chr5 42420828 42426019 -110111240 + L1Md_T LINE L1 300 5587 -299 6 908 9549 7 0 0 chr5 42426021 42427017 -110110242 + L1Md_T LINE L1 5590 6585 0 6 908 628 190 8 8 chr5 42427032 42427154 -110110105 - Lx4B LINE L1 -321 5556 5435 6 908 614 347 72 5 chr5 42427189 42427485 -110109774 + MER74A LTR ERVL 26 397 -225 6 908 291 85 0 0 chr5 42428336 42428383 -110108876 + (T)n Simple_repeat Simple_repeat 1 47 0 6 908 2156 84 0 69 chr5 42428406 42428724 -110108535 + L1Md_F2 LINE L1 6275 6570 -12 6 908 41471 15 0 6 chr5 42429683 42435843 -110101416 - L1Md_A LINE L1 0 6582 465 6 908 288 224 0 0 chr5 42435876 42435943 -110101316 + CT-rich Low_complexity Low_complexity 110 176 0 6 908 180 0 0 0 chr5 42436039 42436059 -110101200 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 6 908 875 180 0 11 chr5 42436061 42436241 -110101018 + CT-rich Low_complexity Low_complexity 1 178 0 6 908 522 0 0 0 chr5 42436248 42436306 -110100953 + (TTTCC)n Simple_repeat Simple_repeat 4 61 0 6 908 201 342 105 75 chr5 42436925 42437257 -110100002 + L2a LINE L2 3085 3426 0 6 908 270 0 0 0 chr5 42437623 42437653 -110099606 + (T)n Simple_repeat Simple_repeat 1 30 0 6 908 205 51 0 49 chr5 42437701 42437742 -110099517 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 6 908 313 221 26 0 chr5 42437806 42437883 -110099376 + GA-rich Low_complexity Low_complexity 2 80 0 6 908 7570 166 14 11 chr5 42438718 42440053 -110097206 - Lx3C LINE L1 -5 6971 5633 6 908 181 159 111 22 chr5 42440281 42440326 -110096933 - MIR3 SINE MIR -50 158 110 6 908 337 219 114 2 chr5 42440388 42440508 -110096751 + Lx7 LINE L1 7573 7680 -16 6 908 402 21 0 0 chr5 42441371 42441418 -110095841 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 908 348 357 131 63 chr5 42441442 42441663 -110095596 - B4 SINE B4 -12 280 45 6 908 591 244 59 0 chr5 42443239 42443358 -110093901 - RSINE1 SINE B4 -37 128 3 6 908 378 250 111 8 chr5 42444283 42444400 -110092859 + L3 LINE CR1 3544 3672 -817 6 908 381 273 50 0 chr5 42444444 42444583 -110092676 + L1MA8 LINE L1 6146 6291 0 6 908 4695 73 11 2 chr5 42444591 42445204 -110092055 + L1_Mus2 LINE L1 5948 6566 0 6 908 376 208 9 9 chr5 42445335 42445442 -110091817 + (TA)n Simple_repeat Simple_repeat 2 108 0 6 908 351 315 111 18 chr5 42446145 42446316 -110090943 - LTR33 LTR ERVL 0 515 329 6 908 1199 68 0 0 chr5 42446340 42446487 -110090772 - B1_Mm SINE Alu 0 147 1 6 908 200 333 84 21 chr5 42447430 42447525 -110089734 - L2b LINE L2 -196 3179 3079 6 908 414 0 0 0 chr5 42447767 42447813 -110089446 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 908 223 300 0 0 chr5 42447817 42447877 -110089382 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 908 285 245 68 45 chr5 42448107 42448261 -110088998 - L2a LINE L2 -7 3419 3220 6 908 1219 42 0 0 chr5 42449291 42449433 -110087826 - B1_Mus2 SINE Alu -5 142 1 6 908 411 173 0 0 chr5 42449584 42449665 -110087594 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 908 1624 293 56 24 chr5 42450190 42450936 -110086323 + L1_Mur3 LINE L1 4274 5043 -837 6 908 5454 61 0 1 chr5 42451334 42452026 -110085233 + L1Md_F2 LINE L1 5891 6581 -1 6 908 221 200 15 91 chr5 42453765 42453831 -110083428 - MIRb SINE MIR -102 166 106 6 908 2847 249 127 49 chr5 42453890 42455154 -110082105 - RMER1C Other Other 0 1342 140 6 908 1539 306 46 6 chr5 42457376 42457876 -110079383 - Lx6 LINE L1 -27 7433 6914 6 908 197 327 89 45 chr5 42458124 42458236 -110079023 - MIRb SINE MIR -129 139 23 6 908 185 222 71 36 chr5 42460167 42460223 -110077036 + MER5A DNA MER1_type 132 189 0 6 908 2170 180 48 8 chr5 42460480 42460877 -110076382 - MTC LTR MaLR -8 413 1 6 908 6909 60 6 7 chr5 42461408 42461547 -110075712 - RLTR13B1 LTR ERVK 0 893 760 6 908 3363 30 5 0 chr5 42461547 42461941 -110075318 + MTA_Mm LTR MaLR 1 396 0 6 908 6909 60 6 7 chr5 42461941 42462695 -110074564 - RLTR13B1 LTR ERVK -134 759 1 6 908 819 312 67 29 chr5 42462952 42463265 -110073994 + MLT1A LTR MaLR 2 326 -48 6 908 752 250 36 59 chr5 42464172 42464478 -110072781 - Lx8 LINE L1 -7 7466 7168 6 908 427 310 96 17 chr5 42465297 42465474 -110071785 - MLT1J1 LTR MaLR -129 315 125 6 908 378 0 0 0 chr5 42465754 42465796 -110071463 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 908 459 0 0 0 chr5 42465800 42465851 -110071408 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 6 908 342 326 12 0 chr5 42465859 42465945 -110071314 + PB1D10 SINE Alu 1 87 -30 6 908 276 273 91 0 chr5 42465988 42466087 -110071172 + MLT1A LTR MaLR 255 362 -12 6 908 1050 308 91 40 chr5 42466129 42466931 -110070328 + MLT1A-int LTR MaLR 60 886 -849 6 908 715 226 22 8 chr5 42467074 42467208 -110070051 - B1_Mus2 SINE Alu -1 146 11 6 908 276 330 0 76 chr5 42467109 42467227 -110070032 - MT2B LTR ERVL -337 264 156 6 909 1107 258 140 38 chr5 42467421 42467901 -110069358 - MT2A LTR ERVL -4 529 1 6 909 1437 48 0 31 chr5 42467927 42468120 -110069139 - L1_Mus1 LINE L1 -5 6562 6376 6 909 399 207 0 24 chr5 42468334 42468418 -110068841 - Lx8 LINE L1 -322 7151 7070 6 909 1378 235 0 231 chr5 42469327 42469869 -110067390 - RMER19C LTR ERVK -194 417 1 6 909 1487 278 76 4 chr5 42470711 42470736 -110066523 - Lx7 LINE L1 -358 7338 7310 6 909 429 70 0 0 chr5 42470736 42470793 -110066466 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 909 1487 278 76 4 chr5 42470793 42471230 -110066029 - Lx7 LINE L1 -387 7309 6844 6 909 741 296 100 33 chr5 42471229 42471392 -110065867 + Lx7 LINE L1 6011 6192 -1281 6 909 702 65 0 0 chr5 42471392 42471484 -110065775 + (CA)n Simple_repeat Simple_repeat 1 92 0 6 909 741 285 95 28 chr5 42471484 42471733 -110065526 + Lx7 LINE L1 6193 6451 -1022 6 909 384 330 0 35 chr5 42471800 42471913 -110065346 - PB1D7 SINE Alu 0 120 12 6 909 432 0 0 0 chr5 42472082 42472130 -110065129 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 909 1113 128 0 0 chr5 42472130 42472310 -110064949 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 909 949 151 6 11 chr5 42472310 42472491 -110064768 + GA-rich Low_complexity Low_complexity 1 180 0 6 909 691 325 26 11 chr5 42472520 42472722 -110064537 - Lx8 LINE L1 -252 7221 7014 6 909 1028 171 45 23 chr5 42472722 42472943 -110064316 - URR1A DNA MER1_type 0 226 1 6 909 691 325 26 11 chr5 42472943 42473008 -110064251 - Lx8 LINE L1 -460 7013 6950 6 909 25 51 0 0 chr5 42473787 42473826 -110063433 + AT_rich Low_complexity Low_complexity 1 39 0 6 909 495 268 146 6 chr5 42473834 42473992 -110063267 - B3A SINE B2 -15 183 4 6 909 296 282 89 49 chr5 42474118 42474192 -110063067 - MER31B LTR ERV1 -160 306 223 6 909 680 30 0 19 chr5 42474192 42474295 -110062964 + L1Md_F3 LINE L1 6470 6570 -14 6 909 296 282 89 49 chr5 42474295 42474343 -110062916 - MER31B LTR ERV1 -244 222 180 6 909 483 296 107 0 chr5 42474769 42474938 -110062321 - MER31B LTR ERV1 -269 197 11 6 909 8593 125 8 6 chr5 42475052 42476437 -110060822 + Lx3A LINE L1 5589 6976 -5 6 909 25729 95 12 45 chr5 42476581 42478522 -110058737 - L1_Mus2 LINE L1 0 6566 4610 6 909 3961 92 5 9 chr5 42478522 42479079 -110058180 - L1Md_F2 LINE L1 -2 6580 6026 6 909 25729 142 30 98 chr5 42479079 42483937 -110053322 - L1_Mus2 LINE L1 -1274 4609 220 6 909 913 218 267 8 chr5 42483938 42484174 -110053085 - RMER15 LTR ERVL -162 413 117 6 909 332 319 72 6 chr5 42484176 42484356 -110052903 - L1MEg LINE L1 -2264 3882 3691 6 909 639 0 0 0 chr5 42484544 42484615 -110052644 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 909 354 296 70 100 chr5 42484682 42484911 -110052348 - L1MEg LINE L1 -4574 1668 1447 6 909 7174 77 1 3 chr5 42484934 42486123 -110051136 - L1Md_F2 LINE L1 0 6582 5399 6 909 30372 59 2 2 chr5 42486139 42491006 -110046253 - L1Md_T LINE L1 0 6582 1713 6 909 1709 218 0 5 chr5 42491000 42491382 -110045877 - L1Md_T LINE L1 -5881 735 356 6 909 1171 316 115 19 chr5 42492210 42492800 -110044459 + Lx8 LINE L1 6827 7473 0 6 909 516 72 0 0 chr5 42492899 42492968 -110044291 + (TCC)n Simple_repeat Simple_repeat 3 71 0 6 909 336 83 0 0 chr5 42493374 42493422 -110043837 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 909 1147 283 51 56 chr5 42493515 42494066 -110043193 - L1MC1 LINE L1 -150 6183 5636 6 909 221 419 20 12 chr5 42495175 42495419 -110041840 + MIR SINE MIR 12 257 -5 7 909 182 275 91 81 chr5 42495491 42495590 -110041669 - MIRc SINE MIR -106 162 63 7 909 249 108 0 0 chr5 42496564 42496601 -110040658 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 909 252 100 0 0 chr5 42497361 42497401 -110039858 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 909 225 186 67 17 chr5 42497517 42497577 -110039682 - MLT1A LTR MaLR -10 364 302 7 909 3594 253 76 45 chr5 42497595 42497736 -110039523 - Lx9 LINE L1 -31 7613 7459 7 909 486 46 0 0 chr5 42497736 42497801 -110039458 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 909 3594 253 76 45 chr5 42497801 42499072 -110038187 - Lx9 LINE L1 -186 7458 6157 7 909 563 304 43 154 chr5 42499120 42499470 -110037789 - MLT1A LTR MaLR -58 316 6 7 909 206 273 15 15 chr5 42499647 42499714 -110037545 + (TATG)n Simple_repeat Simple_repeat 2 68 0 7 909 260 359 39 62 chr5 42499767 42499945 -110037314 - B4A SINE B4 -118 174 1 7 909 22 0 0 0 chr5 42500644 42500666 -110036593 + AT_rich Low_complexity Low_complexity 1 22 0 1 909 268 306 10 64 chr5 42501449 42501563 -110035696 - MIRb SINE MIR -22 246 136 2 909 3429 270 72 88 chr5 42501587 42502239 -110035020 - Lx8 LINE L1 -4 7469 6823 3 909 528 16 0 0 chr5 42502239 42502300 -110034959 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 909 3429 270 72 88 chr5 42502300 42502342 -110034917 - Lx8 LINE L1 -651 6822 6801 3 909 441 0 0 0 chr5 42502342 42502391 -110034868 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 5 909 405 0 0 0 chr5 42502399 42502444 -110034815 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 909 3429 270 72 88 chr5 42502444 42503169 -110034090 - Lx8 LINE L1 -676 6797 6063 3 909 341 237 93 163 chr5 42503319 42503632 -110033627 - B4A SINE B4 0 292 2 7 909 203 299 140 40 chr5 42504865 42505015 -110032244 + MIR SINE MIR 61 225 -37 8 909 344 300 25 0 chr5 42505391 42505504 -110031755 + B3A SINE B2 1 127 -89 9 909 561 55 0 0 chr5 42505537 42505610 -110031649 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 909 211 67 0 62 chr5 42505612 42505660 -110031599 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 1 909 293 294 84 49 chr5 42505730 42505873 -110031386 + MIR SINE MIR 78 225 -37 1 909 269 286 50 20 chr5 42507359 42507459 -110029800 - MER3 DNA MER1_type -106 103 1 1 909 276 30 0 0 chr5 42508462 42508495 -110028764 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 909 480 35 0 0 chr5 42508993 42509051 -110028208 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 909 273 315 71 0 chr5 42509419 42509546 -110027713 + MLT1N2 LTR MaLR 419 554 -8 1 909 936 296 48 11 chr5 42509549 42509822 -110027437 + B4A SINE B4 3 285 -7 1 909 512 362 84 73 chr5 42510320 42510376 -110026883 + LTR85c LTR Gypsy? 120 175 -648 1 909 1901 177 99 0 chr5 42510376 42510710 -110026549 - ORR1B2 LTR MaLR 0 367 1 1 909 512 362 84 73 chr5 42510710 42511306 -110025953 + LTR85c LTR Gypsy? 176 779 -44 1 909 750 182 0 8 chr5 42511935 42512068 -110025191 - Lx2B LINE L1 -613 6387 6256 2 909 3070 193 10 36 chr5 42512068 42512671 -110024588 + Lx2B LINE L1 6396 6982 -18 2 909 440 258 102 0 chr5 42513454 42513582 -110023677 - MER20 DNA MER1_type -24 195 55 2 909 2504 50 0 7 chr5 42513584 42513884 -110023375 + L1Md_F2 LINE L1 5289 5586 -297 2 909 8430 58 3 0 chr5 42513884 42514877 -110022382 + L1Md_F2 LINE L1 5587 6582 0 2 909 298 340 73 117 chr5 42516033 42516333 -110020926 - MLT1G1 LTR MaLR -22 557 271 2 909 962 276 63 25 chr5 42517890 42518254 -110019005 - L1MB3 LINE L1 -103 6080 5703 2 909 522 296 78 30 chr5 42518836 42519107 -110018152 - L1MC5 LINE L1 -76 7885 7602 2 909 229 321 102 26 chr5 42519228 42519532 -110017727 - L1MC5 LINE L1 -491 7470 7144 2 909 232 346 130 43 chr5 42519970 42520224 -110017035 + MLT1L LTR MaLR 285 560 -50 2 909 181 294 0 0 chr5 42520252 42520303 -110016956 - MIR SINE MIR -164 98 48 2 909 649 106 18 0 chr5 42522444 42522557 -110014702 + (TG)n Simple_repeat Simple_repeat 2 116 0 2 909 425 360 112 7 chr5 42522780 42523049 -110014210 - MLT1A0 LTR MaLR -5 360 64 2 909 239 304 78 128 chr5 42523083 42523130 -110014129 + ORR1D1 LTR MaLR 23 66 -308 3 909 6788 36 1 1 chr5 42523130 42523889 -110013370 - L1Md_F2 LINE L1 -12 6570 5812 3 909 239 304 78 128 chr5 42523889 42524098 -110013161 + ORR1D1 LTR MaLR 67 266 -108 3 909 433 236 158 57 chr5 42524705 42524952 -110012307 - L1MC2 LINE L1 -157 6187 5916 3 909 1063 257 35 114 chr5 42524954 42525473 -110011786 - L1MC2 LINE L1 -1355 4791 4314 3 909 251 258 53 21 chr5 42525604 42525699 -110011560 - L3 LINE CR1 -115 4374 4277 3 909 1747 147 3 14 chr5 42526075 42526359 -110010900 - Lx LINE L1 0 6654 6374 3 909 188 361 146 29 chr5 42526492 42526629 -110010630 - MIR3 SINE MIR -49 159 7 3 909 208 233 0 16 chr5 42527056 42527117 -110010142 + GA-rich Low_complexity Low_complexity 2 61 0 3 909 450 279 140 23 chr5 42527117 42527381 -110009878 + L1MA6 LINE L1 5982 6276 -24 3 909 36233 34 1 0 chr5 42527399 42533301 -110003958 + L1Md_T LINE L1 1 5589 -297 3 909 9578 6 0 0 chr5 42533301 42534297 -110002962 + L1Md_T LINE L1 5590 6585 0 3 909 632 238 79 0 chr5 42534311 42534437 -110002822 - B1_Mur2 SINE Alu -13 136 1 3 909 426 289 0 0 chr5 42535190 42535287 -110001972 - RMER30 DNA MER1_type 0 202 106 4 909 405 58 0 0 chr5 42535288 42535340 -110001919 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 909 583 325 66 11 chr5 42535759 42536030 -110001229 + RMER15 LTR ERVL 275 560 -15 4 909 186 171 0 0 chr5 42536037 42536078 -110001181 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 4 909 1520 231 87 18 chr5 42536154 42536547 -110000712 + RMER10A LTR ERVL 1 420 -22 4 909 1282 222 123 32 chr5 42536999 42537404 -109999855 - RMER10A LTR ERVL 0 442 1 4 909 265 196 39 43 chr5 42537425 42537508 -109999751 + MLT1A1 LTR MaLR 284 373 -17 4 909 233 293 59 25 chr5 42537662 42537781 -109999478 + MLT1A1 LTR MaLR 488 610 0 4 909 1305 83 0 0 chr5 42539610 42539790 -109997469 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 909 474 132 0 0 chr5 42539790 42539866 -109997393 + (TCC)n Simple_repeat Simple_repeat 1 76 0 4 909 1850 168 7 10 chr5 42539926 42540232 -109997027 + ORR1B2 LTR MaLR 3 307 -60 4 909 3458 173 30 10 chr5 42540235 42541082 -109996177 + Lx2B LINE L1 5423 6300 -700 5 909 370 324 10 0 chr5 42541115 42541217 -109996042 - PB1D10 SINE Alu -13 104 2 5 909 817 282 43 39 chr5 42541284 42541539 -109995720 - B4 SINE B4 -4 288 33 5 909 331 200 0 12 chr5 42541608 42541694 -109995565 + Lx4B LINE L1 6967 7051 -7 5 909 203 125 0 0 chr5 42542654 42542686 -109994573 + L2b LINE L2 3344 3375 0 5 909 1860 130 25 70 chr5 42542859 42543215 -109994044 + RMER1B Other Other 724 1063 -3 5 909 1291 41 0 0 chr5 42543290 42543436 -109993823 - B1_Mus2 SINE Alu 0 147 2 5 909 339 259 86 29 chr5 42544705 42544844 -109992415 - L1ME4a LINE L1 -12 6112 5966 5 909 278 270 16 16 chr5 42544966 42545030 -109992229 + ID4 SINE ID 8 71 -12 5 909 393 22 0 0 chr5 42545211 42545257 -109992002 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 909 447 330 162 6 chr5 42545631 42545951 -109991308 + MLT1L LTR MaLR 215 584 -26 6 909 244 325 150 34 chr5 42546197 42546404 -109990855 + L2c LINE L2 3115 3345 -42 6 909 21 57 0 0 chr5 42546817 42546852 -109990407 + AT_rich Low_complexity Low_complexity 1 35 0 6 909 416 310 99 30 chr5 42547231 42547464 -109989795 + MIR SINE MIR 14 262 0 6 909 243 257 13 103 chr5 42547792 42547870 -109989389 - RSINE1 SINE B4 -2 163 93 6 909 300 364 20 0 chr5 42547975 42548074 -109989185 - B4A SINE B4 -188 104 4 6 909 207 0 0 0 chr5 42549233 42549256 -109988003 + (GA)n Simple_repeat Simple_repeat 1 23 0 6 909 24 53 0 0 chr5 42550170 42550208 -109987051 + AT_rich Low_complexity Low_complexity 1 38 0 6 909 459 0 0 0 chr5 42550492 42550543 -109986716 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 909 1518 264 19 13 chr5 42551224 42551600 -109985659 - MTE2b LTR MaLR -1 378 1 6 909 254 253 86 21 chr5 42552270 42552363 -109984896 - L1MA9 LINE L1 -13 6321 6223 7 909 232 213 0 41 chr5 42552383 42552432 -109984827 - MTD LTR MaLR -12 407 361 7 909 11276 121 21 16 chr5 42552432 42554922 -109982337 - L1Md_F LINE L1 -3165 2718 276 7 909 273 128 0 0 chr5 42554997 42555044 -109982215 + (CTA)n Simple_repeat Simple_repeat 1 47 0 7 909 1183 295 94 14 chr5 42555067 42555558 -109981701 - L1MA9 LINE L1 -151 6149 5617 7 909 450 0 0 0 chr5 42555712 42555762 -109981497 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 909 414 0 0 0 chr5 42555762 42555807 -109981452 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 909 587 239 23 23 chr5 42557190 42557323 -109979936 - ID_B1 SINE B4 -7 217 85 7 909 387 0 0 0 chr5 42557518 42557561 -109979698 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 909 504 0 0 0 chr5 42557561 42557616 -109979643 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 909 247 335 41 86 chr5 42558198 42558443 -109978816 + MIR SINE MIR 13 246 -16 7 909 313 242 105 0 chr5 42558814 42558909 -109978350 + MLT1H LTR MaLR 43 147 -402 8 909 2873 68 39 0 chr5 42558962 42559343 -109977916 - L1_Mus1 LINE L1 -1 6566 6171 8 909 184 361 55 9 chr5 42559814 42559923 -109977336 + L2a LINE L2 3302 3415 -11 8 909 417 173 27 0 chr5 42560623 42560698 -109976561 + CT-rich Low_complexity Low_complexity 3 79 0 8 909 576 56 34 0 chr5 42560698 42560787 -109976472 + (TC)n Simple_repeat Simple_repeat 1 92 0 8 909 346 346 7 113 chr5 42561231 42561381 -109975878 - MLT1A LTR MaLR -177 197 64 8 909 207 216 0 0 chr5 42561910 42561947 -109975312 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 8 909 414 0 0 0 chr5 42562072 42562118 -109975141 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 909 536 267 13 52 chr5 42562119 42562273 -109974986 - B3A SINE B2 -50 148 1 8 909 603 0 0 0 chr5 42562892 42562959 -109974300 + (TC)n Simple_repeat Simple_repeat 2 68 0 8 909 180 0 0 0 chr5 42562959 42562978 -109974281 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 909 543 228 0 87 chr5 42563191 42563340 -109973919 - Lx4B LINE L1 -209 6849 6714 9 909 327 280 194 63 chr5 42565133 42565339 -109971920 - RMER4B LTR ERVK -11 574 342 9 909 267 103 0 0 chr5 42566210 42566249 -109971010 + (CA)n Simple_repeat Simple_repeat 1 39 0 9 909 298 317 76 58 chr5 42566334 42566505 -109970754 - MIRb SINE MIR -46 222 49 9 909 212 414 22 36 chr5 42567278 42567416 -109969843 - L2c LINE L2 0 3387 3252 9 909 1226 7 0 0 chr5 42567723 42567860 -109969399 + B1_Mus2 SINE Alu 2 138 -9 9 909 432 0 0 0 chr5 42567860 42567908 -109969351 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 9 909 418 302 66 94 chr5 42567930 42568142 -109969117 + MTEb LTR MaLR 161 366 -13 9 909 199 319 0 14 chr5 42569491 42569564 -109967695 - L2c LINE L2 -210 3177 3106 9 909 312 325 96 40 chr5 42570639 42570764 -109966495 - HAL1-3A_ME LINE L1 -443 2415 2284 9 909 288 77 0 0 chr5 42570764 42570803 -109966456 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 1 909 185 459 30 10 chr5 42571372 42571471 -109965788 + MIR SINE MIR 21 121 -87 1 909 300 296 8 67 chr5 42573518 42573652 -109963607 + Lx7 LINE L1 7175 7300 -396 1 909 21 0 0 0 chr5 42573661 42573682 -109963577 + AT_rich Low_complexity Low_complexity 1 21 0 1 909 230 319 14 14 chr5 42574009 42574082 -109963177 - ID2 SINE ID -2 81 9 1 909 307 317 149 18 chr5 42576931 42577159 -109960100 - L2 LINE L2 -379 3040 2783 1 909 21 0 0 0 chr5 42578602 42578623 -109958636 + AT_rich Low_complexity Low_complexity 1 21 0 1 909 192 148 16 32 chr5 42578633 42578696 -109958563 + (CAA)n Simple_repeat Simple_repeat 2 63 0 1 909 358 269 39 39 chr5 42578704 42578882 -109958377 - Lx7 LINE L1 -358 7338 7161 1 909 278 266 139 80 chr5 42579031 42579182 -109958077 - MLT1A1 LTR MaLR -2 406 247 1 909 33828 35 1 0 chr5 42579529 42585556 -109951703 + L1Md_T LINE L1 1 5589 -297 1 909 8986 7 0 0 chr5 42585556 42586552 -109950707 + L1Md_T LINE L1 5590 6585 0 1 909 34 79 0 0 chr5 42586638 42586714 -109950545 + AT_rich Low_complexity Low_complexity 1 76 0 1 909 234 355 77 66 chr5 42587288 42587469 -109949790 - MIRb SINE MIR -72 196 14 1 909 315 0 0 0 chr5 42587500 42587535 -109949724 + (T)n Simple_repeat Simple_repeat 1 35 0 1 909 273 282 25 13 chr5 42587802 42587881 -109949378 - ID4_ SINE ID 0 83 4 1 909 423 0 0 0 chr5 42587972 42588019 -109949240 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 909 290 258 50 12 chr5 42588019 42588180 -109949079 + (TA)n Simple_repeat Simple_repeat 2 168 0 1 909 749 254 18 141 chr5 42588512 42588732 -109948527 + B3A SINE B2 3 204 -12 1 909 256 276 207 0 chr5 42588715 42588831 -109948428 + MER58B DNA MER1_type 178 317 -24 1 909 290 176 75 38 chr5 42589427 42589533 -109947726 + Charlie16a DNA MER1_type 120 229 -113 1 909 197 163 0 20 chr5 42590648 42590698 -109946561 + GA-rich Low_complexity Low_complexity 1 49 0 1 909 21 0 0 0 chr5 42591112 42591133 -109946126 + AT_rich Low_complexity Low_complexity 1 21 0 1 909 14379 115 110 4 chr5 42591239 42596384 -109940875 - L1Md_F2 LINE L1 -2 6580 366 1 909 180 0 0 0 chr5 42597053 42597073 -109940186 + (A)n Simple_repeat Simple_repeat 1 20 0 1 909 467 300 105 29 chr5 42597643 42597764 -109939495 - Lx8 LINE L1 -1 7472 7348 1 909 189 107 0 0 chr5 42597764 42597792 -109939467 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1 909 467 300 105 29 chr5 42597792 42597976 -109939283 - Lx8 LINE L1 -126 7347 7145 1 909 776 306 19 5 chr5 42598015 42598225 -109939034 - B3 SINE B2 0 216 4 1 910 345 400 114 22 chr5 42599500 42599817 -109937442 - LTR16A LTR ERVL -49 402 57 1 910 213 279 152 0 chr5 42600282 42600361 -109936898 - MER5B DNA MER1_type -79 99 9 1 910 254 311 61 94 chr5 42600335 42600516 -109936743 - MIR3 SINE MIR -85 183 9 1 910 1002 45 0 0 chr5 42602814 42602946 -109934313 + (CCCCAG)n Simple_repeat Simple_repeat 2 133 0 1 910 251 327 35 114 chr5 42603979 42604093 -109933166 - B3 SINE B2 -106 110 6 1 910 1000 285 66 21 chr5 42604129 42604555 -109932704 - Lx8 LINE L1 -8 7465 7021 1 910 983 252 111 18 chr5 42604574 42604906 -109932353 + Lx8 LINE L1 6434 6796 -677 1 910 376 18 17 35 chr5 42604942 42605000 -109932259 + (TTTTG)n Simple_repeat Simple_repeat 5 61 0 1 910 281 344 101 62 chr5 42605818 42606026 -109931233 - MLT1J LTR MaLR -173 339 124 1 910 788 296 115 12 chr5 42606988 42607241 -109930018 + MTD LTR MaLR 117 395 -24 1 910 559 286 128 19 chr5 42608689 42608946 -109928313 + B4A SINE B4 2 286 -6 1 910 254 269 26 103 chr5 42609153 42609269 -109927990 + PB1D10 SINE Alu 4 110 -7 1 910 248 348 0 59 chr5 42609282 42609401 -109927858 + BC1_Mm scRNA scRNA 2 113 -39 1 910 22 56 0 0 chr5 42609496 42609532 -109927727 + AT_rich Low_complexity Low_complexity 1 36 0 1 910 1102 72 0 0 chr5 42609542 42609681 -109927578 - B1_Mus1 SINE Alu -6 142 4 1 910 286 261 0 0 chr5 42610752 42610821 -109926438 + MIRc SINE MIR 200 268 0 1 910 200 315 56 0 chr5 42611471 42611560 -109925699 - MIR3 SINE MIR -25 183 90 1 910 748 263 60 15 chr5 42611713 42611914 -109925345 + ID_B1 SINE B4 3 212 -12 1 910 411 21 0 0 chr5 42612797 42612845 -109924414 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 1 910 913 154 11 6 chr5 42612845 42613021 -109924238 + CT-rich Low_complexity Low_complexity 3 179 0 1 910 245 419 48 6 chr5 42613184 42613352 -109923907 - MER21B LTR ERV1 -76 787 613 1 910 261 139 0 0 chr5 42613466 42613509 -109923750 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 910 397 391 122 25 chr5 42613563 42613883 -109923376 - MER21B LTR ERV1 -415 448 98 1 910 217 321 74 12 chr5 42614057 42614195 -109923064 + MIRb SINE MIR 26 169 -99 1 910 210 308 0 44 chr5 42614601 42614669 -109922590 + MIRc SINE MIR 79 143 -125 1 910 182 200 15 118 chr5 42615028 42615096 -109922163 + MIRb SINE MIR 188 248 -20 1 910 725 346 25 8 chr5 42615261 42615506 -109921753 - MLT1A0 LTR MaLR 0 365 117 1 910 2482 169 17 2 chr5 42615525 42615929 -109921330 + MTC LTR MaLR 1 410 -11 1 910 6225 32 0 0 chr5 42616557 42617282 -109919977 - L1Md_T LINE L1 0 6582 5858 1 910 3199 60 12 2 chr5 42617324 42617726 -109919533 - L1_Mus1 LINE L1 0 6567 6162 1 910 3475 85 20 10 chr5 42617721 42618210 -109919049 + L1_Mus2 LINE L1 6073 6566 0 1 910 405 309 112 22 chr5 42618227 42618406 -109918853 - MIRb SINE MIR -32 236 42 1 910 196 312 50 0 chr5 42618616 42618696 -109918563 + L2 LINE L2 2371 2454 -965 1 910 250 339 142 30 chr5 42619860 42619994 -109917265 - MIR SINE MIR -99 163 15 1 910 680 71 10 0 chr5 42620156 42620255 -109917004 + (GA)n Simple_repeat Simple_repeat 1 100 0 1 910 268 333 0 0 chr5 42621452 42621527 -109915732 + ID4 SINE ID 2 76 -7 1 910 249 299 33 25 chr5 42622250 42622370 -109914889 - Lx8 LINE L1 -381 7092 6972 1 910 452 175 10 0 chr5 42622370 42622467 -109914792 + CT-rich Low_complexity Low_complexity 2 99 0 1 910 1012 129 6 11 chr5 42622467 42622647 -109914612 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1 910 1538 190 152 0 chr5 42622733 42623075 -109914184 - ORR1B1 LTR MaLR 0 394 1 1 910 8153 181 52 100 chr5 42623075 42623612 -109913647 - ORR1B1-int LTR MaLR 0 1963 1441 1 910 435 38 0 0 chr5 42623612 42623665 -109913594 + (CACTC)n Simple_repeat Simple_repeat 2 54 0 1 910 8153 181 52 100 chr5 42623665 42625176 -109912083 - ORR1B1-int LTR MaLR -523 1440 16 1 910 307 127 156 16 chr5 42625176 42625240 -109912019 - ORR1B1-int LTR MaLR -1435 74 2 1 910 2067 159 29 19 chr5 42625247 42625624 -109911635 - ORR1B1 LTR MaLR -13 381 1 1 910 469 167 16 0 chr5 42626995 42627121 -109910138 + GA-rich Low_complexity Low_complexity 2 129 0 1 910 537 16 0 0 chr5 42627168 42627230 -109910029 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 910 477 350 48 32 chr5 42627294 42627542 -109909717 - MamRep605 Unknown Unknown -266 610 359 1 910 519 328 63 30 chr5 42627557 42627859 -109909400 - Tigger11a DNA MER2_type -31 704 393 1 910 261 0 0 0 chr5 42627860 42627889 -109909370 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 910 534 16 0 0 chr5 42627889 42627951 -109909308 + (GA)n Simple_repeat Simple_repeat 1 63 0 1 910 426 216 12 6 chr5 42628098 42628270 -109908989 + (CA)n Simple_repeat Simple_repeat 2 174 0 1 910 187 297 40 13 chr5 42629334 42629409 -109907850 - MIR SINE MIR -25 237 161 1 910 185 0 40 0 chr5 42630545 42630570 -109906689 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1 910 627 241 45 0 chr5 42631469 42631602 -109905657 - B1_Mur2 SINE Alu -10 139 1 1 910 361 349 8 8 chr5 42631680 42631807 -109905452 - MLT1C LTR MaLR 0 467 341 1 910 387 320 88 42 chr5 42631856 42632071 -109905188 - MLT1C LTR MaLR -204 263 39 1 910 269 321 0 0 chr5 42632430 42632486 -109904773 + MER81 DNA AcHobo 38 93 -21 1 910 2299 123 3 11 chr5 42634572 42634933 -109902326 - Lx2 LINE L1 -6 6991 6634 1 910 183 324 58 14 chr5 42636043 42636112 -109901147 + L4 LINE RTE 1458 1529 -500 1 910 297 350 87 55 chr5 42636374 42636592 -109900667 + MIR SINE MIR 37 261 -1 1 910 711 93 0 0 chr5 42636952 42637070 -109900189 + (TC)n Simple_repeat Simple_repeat 1 118 0 1 910 385 304 63 53 chr5 42637122 42637407 -109899852 - Lx9 LINE L1 -215 7429 7142 1 910 903 19 0 0 chr5 42637438 42637543 -109899716 + (TC)n Simple_repeat Simple_repeat 2 106 0 1 910 183 311 133 47 chr5 42637764 42637892 -109899367 + L2c LINE L2 3003 3141 -246 1 910 368 328 45 17 chr5 42638533 42638710 -109898549 - Tigger11a DNA MER2_type -3 732 551 1 910 1009 308 70 19 chr5 42638765 42639252 -109898007 - Lx9 LINE L1 -147 7497 6986 1 910 353 70 0 17 chr5 42639625 42639683 -109897576 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 1 910 273 255 13 57 chr5 42639772 42639930 -109897329 - L1MC4a LINE L1 -10 7872 7722 1 910 343 192 260 47 chr5 42639980 42640149 -109897110 - Lx8 LINE L1 0 7473 7269 1 910 1132 266 59 11 chr5 42640173 42640530 -109896729 - Lx8 LINE L1 -145 7328 6955 1 910 223 246 28 28 chr5 42640912 42640983 -109896276 + GA-rich Low_complexity Low_complexity 2 72 0 1 910 906 217 32 5 chr5 42641019 42641237 -109896022 - URR1B DNA MER1_type -1 224 1 1 910 204 67 0 0 chr5 42641545 42641575 -109895684 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 910 206 231 19 0 chr5 42641986 42642038 -109895221 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 1 910 1242 87 0 0 chr5 42642227 42642400 -109894859 + (TTCTC)n Simple_repeat Simple_repeat 5 177 0 1 910 270 56 0 0 chr5 42642400 42642436 -109894823 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 1 910 1082 112 6 0 chr5 42642450 42642619 -109894640 + (TCTCC)n Simple_repeat Simple_repeat 5 174 0 1 910 244 246 185 8 chr5 42643014 42643133 -109894126 + MIRb SINE MIR 56 195 -73 1 910 439 309 134 39 chr5 42643141 42643424 -109893835 - MER2 DNA MER2_type 0 345 36 2 910 632 300 0 21 chr5 42644092 42644235 -109893024 + ID_B1 SINE B4 78 217 -7 2 910 203 190 23 23 chr5 42645991 42646034 -109891225 - L2 LINE L2 -571 2848 2806 2 910 443 63 16 0 chr5 42646179 42646242 -109891017 + (CATA)n Simple_repeat Simple_repeat 3 66 0 2 910 238 364 0 0 chr5 42646287 42646353 -109890906 - ID4_ SINE ID -15 68 3 2 910 765 340 89 32 chr5 42646817 42647313 -109889946 - MT2A LTR ERVL -2 531 8 2 910 398 357 84 15 chr5 42647721 42647856 -109889403 - MIR SINE MIR -11 251 100 2 910 552 15 0 0 chr5 42647856 42647921 -109889338 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 910 398 357 84 15 chr5 42647921 42647987 -109889272 - MIR SINE MIR -163 99 36 2 910 1725 279 121 23 chr5 42648355 42648435 -109888824 - RMER1C Other Other -8 1334 1240 2 910 369 0 0 0 chr5 42648435 42648476 -109888783 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 910 1725 279 121 23 chr5 42648476 42649124 -109888135 - RMER1C Other Other -103 1239 537 2 910 21 71 0 0 chr5 42649908 42649950 -109887309 + AT_rich Low_complexity Low_complexity 1 42 0 2 910 372 329 94 9 chr5 42650218 42650546 -109886713 - ERVL-E-int LTR ERVL -237 5430 5075 2 910 337 276 125 32 chr5 42651065 42651282 -109885977 + MLT1H-int LTR MaLR 1149 1386 -23 2 910 258 32 0 0 chr5 42651722 42651753 -109885506 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 2 910 3551 158 9 14 chr5 42651753 42652389 -109884870 - Lx2A1 LINE L1 -17 6991 6359 2 910 26 30 0 0 chr5 42652926 42652959 -109884300 + AT_rich Low_complexity Low_complexity 1 33 0 2 910 666 25 0 0 chr5 42653744 42653824 -109883435 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 910 2399 76 0 6 chr5 42655698 42656016 -109881243 + L1Md_F2 LINE L1 6253 6568 -14 2 910 2948 49 7 47 chr5 42656509 42656913 -109880346 + RLTR10 LTR ERVK 1 388 -2 2 910 1842 143 15 37 chr5 42658316 42658643 -109878616 + Lx3B LINE L1 6651 6970 -3 2 910 206 160 20 0 chr5 42658789 42658839 -109878420 + A-rich Low_complexity Low_complexity 3 53 0 2 910 231 313 30 8 chr5 42659156 42659288 -109877971 + L1M1 LINE L1 5795 5929 -371 2 910 582 41 0 0 chr5 42659327 42659400 -109877859 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 910 232 120 40 0 chr5 42659508 42659558 -109877701 + GA-rich Low_complexity Low_complexity 1 52 0 2 910 473 88 12 0 chr5 42659565 42659645 -109877614 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 2 910 302 24 48 0 chr5 42659647 42659689 -109877570 + (CAGAGA)n Simple_repeat Simple_repeat 1 44 0 2 910 29 28 0 0 chr5 42659832 42659868 -109877391 + AT_rich Low_complexity Low_complexity 1 36 0 2 910 616 326 11 53 chr5 42660024 42660212 -109877047 + B3A SINE B2 14 193 -5 2 910 648 253 113 0 chr5 42660807 42661001 -109876258 - ID_B1 SINE B4 -8 216 1 2 910 453 319 118 0 chr5 42661578 42661747 -109875512 + MER5A DNA MER1_type 1 189 0 2 910 317 273 172 15 chr5 42661788 42661922 -109875337 + MIRb SINE MIR 105 259 -9 2 910 446 283 168 21 chr5 42662752 42662990 -109874269 + B4A SINE B4 2 274 -18 2 910 1263 65 0 0 chr5 42663849 42664019 -109873240 + (TTCTC)n Simple_repeat Simple_repeat 4 173 0 2 910 281 333 75 38 chr5 42664821 42664980 -109872279 + ORR1E LTR MaLR 1 165 -194 2 910 262 286 0 16 chr5 42665846 42665910 -109871349 + MER106B DNA MER1_type 59 121 -938 2 910 253 265 36 0 chr5 42665986 42666069 -109871190 + RMER1B Other Other 63 148 -918 2 910 1476 229 31 50 chr5 42666517 42666936 -109870323 + RMER1B Other Other 11 421 -645 2 910 2358 42 41 6 chr5 42666992 42667307 -109869952 + IAPEY2_LTR LTR ERVK 32 357 0 2 910 2229 248 23 48 chr5 42667307 42668002 -109869257 + RMER1B Other Other 375 1052 -14 2 910 1208 76 0 0 chr5 42668206 42668480 -109868779 + L1_Mus1 LINE L1 6404 6567 0 2 910 479 193 0 0 chr5 42668695 42668783 -109868476 + Lx9 LINE L1 6368 6455 -1189 2 910 1334 215 66 10 chr5 42668798 42669099 -109868160 + Lx9 LINE L1 6522 6839 -805 2 910 1948 185 91 11 chr5 42669101 42669576 -109867683 + Lx9 LINE L1 7128 7640 -4 2 910 396 0 0 0 chr5 42670275 42670319 -109866940 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 910 337 295 26 20 chr5 42671201 42671353 -109865906 - L1M2 LINE L1 -1190 4953 4801 2 910 2965 18 3 0 chr5 42671464 42671800 -109865459 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 910 13700 21 10 1 chr5 42671800 42673440 -109863819 - IAPEz-int LTR ERVK 0 6481 4827 2 910 30376 24 9 11 chr5 42673426 42677153 -109860106 - IAPEz-int LTR ERVK -2752 3729 8 2 910 2955 21 3 0 chr5 42677153 42677489 -109859770 - IAPLTR1a_Mm LTR ERVK 0 337 1 2 910 588 252 34 10 chr5 42677490 42677698 -109859561 + L1M1 LINE L1 5276 5488 -812 2 910 260 226 18 36 chr5 42678434 42678489 -109858770 - ORR1D1 LTR MaLR -22 397 306 2 910 1156 94 6 11 chr5 42678489 42678672 -109858587 - L1_Mus2 LINE L1 -497 5386 5205 2 910 6839 80 6 31 chr5 42678674 42679837 -109857422 + L1_Mus2 LINE L1 5425 6565 -1 2 910 799 274 22 105 chr5 42679857 42680134 -109857125 - ORR1D1 LTR MaLR -55 319 66 2 910 511 313 127 78 chr5 42680135 42680208 -109857051 + ORR1D2 LTR MaLR 73 135 -235 2 910 2008 154 27 27 chr5 42680208 42680576 -109856683 + Lx2 LINE L1 6611 6978 -19 2 910 237 33 0 0 chr5 42680578 42680608 -109856651 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 910 511 313 127 78 chr5 42680608 42680815 -109856444 + ORR1D2 LTR MaLR 136 370 0 2 910 2979 199 61 38 chr5 42681113 42681902 -109855357 + Lx9 LINE L1 6838 7644 0 2 910 606 51 0 0 chr5 42682032 42682110 -109855149 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 910 1480 191 51 85 chr5 42682338 42682516 -109854743 - ORR1C2 LTR MaLR -2 382 195 2 910 495 33 0 0 chr5 42682516 42682577 -109854682 + (CAGAGA)n Simple_repeat Simple_repeat 4 64 0 2 910 1480 191 51 85 chr5 42682577 42682788 -109854471 - ORR1C2 LTR MaLR -190 194 6 2 910 635 37 12 0 chr5 42683641 42683723 -109853536 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 2 910 592 342 39 59 chr5 42683723 42684107 -109853152 - MLT2B2 LTR ERVL -62 500 32 2 910 181 296 97 67 chr5 42684906 42685040 -109852219 - MIRb SINE MIR -121 147 10 2 910 522 0 0 0 chr5 42685217 42685275 -109851984 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 910 228 268 24 24 chr5 42685295 42685379 -109851880 + CT-rich Low_complexity Low_complexity 1 84 0 2 910 271 331 14 35 chr5 42685687 42685831 -109851428 + GA-rich Low_complexity Low_complexity 3 143 0 2 910 346 72 28 28 chr5 42687039 42687110 -109850149 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 2 910 435 19 0 0 chr5 42687110 42687162 -109850097 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 910 1067 70 42 0 chr5 42687736 42687878 -109849381 - B1_Mus1 SINE Alu 0 148 1 2 910 182 359 136 13 chr5 42688195 42688350 -109848909 - MIRb SINE MIR -58 210 37 2 910 510 349 98 15 chr5 42688357 42688683 -109848576 + MamRep605 Unknown Unknown 410 762 -114 2 910 4050 151 104 79 chr5 42688838 42689707 -109847552 + RMER19B LTR ERVK 1 890 -12 2 910 1262 270 37 17 chr5 42689815 42690218 -109847041 - RCHARR1 DNA MER1_type -1 973 563 2 910 7485 100 3 5 chr5 42690218 42692085 -109845174 + L1_Mus3 LINE L1 4766 6627 -11 2 910 1829 275 31 52 chr5 42692085 42692254 -109845005 - RCHARR1 DNA MER1_type -397 577 408 2 910 3073 61 13 3 chr5 42692254 42692646 -109844613 + MTA_Mm LTR MaLR 1 396 0 2 910 1829 275 31 52 chr5 42692646 42692729 -109844530 - RCHARR1 DNA MER1_type -567 407 329 2 910 207 0 0 0 chr5 42692729 42692752 -109844507 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 910 1829 275 31 52 chr5 42692752 42693081 -109844178 - RCHARR1 DNA MER1_type -646 328 7 2 910 426 348 95 42 chr5 42693087 42693276 -109843983 - Tigger5 DNA MER2_type -2179 227 29 2 910 192 351 31 69 chr5 42693568 42693727 -109843532 + MIR SINE MIR 35 187 -75 2 910 252 292 113 10 chr5 42694607 42694704 -109842555 + MLT1F2 LTR MaLR 31 137 -423 2 910 596 306 81 8 chr5 42695567 42695801 -109841458 - MER2 DNA MER2_type -94 251 1 2 910 1224 163 0 63 chr5 42695838 42695922 -109841337 - L1_Mur2 LINE L1 -521 5356 5278 2 910 4092 88 0 0 chr5 42695922 42696459 -109840800 - Lx3_Mus LINE L1 0 7009 6473 2 910 1224 163 0 63 chr5 42696459 42696643 -109840616 - L1_Mur2 LINE L1 -600 5277 5105 2 910 6318 98 16 68 chr5 42696641 42697951 -109839308 + L1_Mus4 LINE L1 5367 6611 -25 2 910 453 36 0 0 chr5 42697953 42698008 -109839251 + (TAA)n Simple_repeat Simple_repeat 3 57 0 2 910 759 174 51 0 chr5 42698584 42698722 -109838537 - B1_Mus1 SINE Alu -1 147 3 2 910 261 355 74 31 chr5 42699975 42700138 -109837121 + BLACKJACK DNA AcHobo 235 404 -2540 2 910 646 269 66 22 chr5 42700657 42700953 -109836306 - Lx6 LINE L1 -670 6790 6248 2 910 1555 290 99 37 chr5 42700952 42701546 -109835713 + Lx6 LINE L1 6800 7430 -30 2 910 360 302 43 7 chr5 42703129 42703269 -109833990 + B1F SINE Alu 3 147 -2 2 910 261 0 0 0 chr5 42703280 42703309 -109833950 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 910 487 112 20 0 chr5 42703309 42703406 -109833853 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 2 910 5189 103 11 1 chr5 42703421 42704217 -109833042 - L1_Mus1 LINE L1 -1068 4815 4012 2 910 7175 92 2 3 chr5 42704214 42705592 -109831667 + L1_Mus1 LINE L1 4805 6179 -388 2 910 1319 185 7 4 chr5 42705595 42705866 -109831393 - Lx4B LINE L1 -286 6772 6501 2 910 225 170 64 0 chr5 42705865 42705912 -109831347 - Lx6 LINE L1 -1190 5860 5811 2 910 1070 220 50 8 chr5 42705913 42706174 -109831085 + Lx5 LINE L1 6779 7050 0 2 910 2135 183 31 5 chr5 42707101 42707491 -109829768 + MTC LTR MaLR 14 413 -8 2 910 195 42 0 0 chr5 42707600 42707624 -109829635 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 910 875 272 95 42 chr5 42707676 42708086 -109829173 - Lx9 LINE L1 -304 7340 6909 2 910 192 40 0 0 chr5 42709793 42709818 -109827441 + (TATAA)n Simple_repeat Simple_repeat 5 29 0 2 910 203 184 0 0 chr5 42709849 42709887 -109827372 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 910 25 31 0 0 chr5 42709889 42709921 -109827338 + AT_rich Low_complexity Low_complexity 1 32 0 2 910 8716 95 33 45 chr5 42709921 42711360 -109825899 - Lx3_Mus LINE L1 0 7009 5587 2 910 398 182 0 9 chr5 42711436 42711547 -109825712 + (TA)n Simple_repeat Simple_repeat 1 110 0 2 910 237 182 27 34 chr5 42712338 42712486 -109824773 + (TA)n Simple_repeat Simple_repeat 1 147 0 2 910 244 330 110 0 chr5 42712909 42713018 -109824241 + RMER12 LTR ERVK 736 856 -466 2 910 189 0 0 0 chr5 42713018 42713039 -109824220 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 910 456 19 0 0 chr5 42713038 42713091 -109824168 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 910 239 268 18 0 chr5 42714908 42714964 -109822295 + RMER15 LTR ERVL 4 60 -515 2 910 1418 262 136 32 chr5 42714990 42715458 -109821801 + RMER15 LTR ERVL 29 546 -29 2 910 315 71 0 0 chr5 42715458 42715500 -109821759 + (CCCTG)n Simple_repeat Simple_repeat 3 44 0 2 910 1418 262 136 32 chr5 42715500 42715524 -109821735 + RMER15 LTR ERVL 547 572 -3 2 910 185 189 71 45 chr5 42716364 42716430 -109820829 + L2b LINE L2 3302 3375 -12 3 910 979 264 95 17 chr5 42717489 42717836 -109819423 + MLT1B LTR MaLR 10 383 -7 3 910 3933 74 16 44 chr5 42718092 42718655 -109818604 - L1_Mus2 LINE L1 0 6566 6020 3 910 2355 70 3 0 chr5 42718655 42718985 -109818274 + L1_Mus2 LINE L1 5740 6070 -496 3 910 1074 92 0 0 chr5 42719080 42719232 -109818027 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 3 910 708 324 105 20 chr5 42720010 42720401 -109816858 + MER89 LTR ERV1 126 549 -10 3 910 291 54 0 0 chr5 42720641 42720678 -109816581 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 3 910 1030 212 0 0 chr5 42721102 42721314 -109815945 - Lx9 LINE L1 -252 7392 7181 3 910 1081 182 5 34 chr5 42721315 42721520 -109815739 + MTC LTR MaLR 1 199 -208 3 910 1780 45 0 18 chr5 42721520 42721749 -109815510 + L1Md_F2 LINE L1 5362 5586 -297 3 910 8373 31 0 5 chr5 42721749 42722738 -109814521 + L1Md_F2 LINE L1 5587 6570 -12 3 910 6498 45 2 5 chr5 42722733 42723535 -109813724 + L1Md_F2 LINE L1 5783 6582 0 3 910 1300 182 0 18 chr5 42723535 42723764 -109813495 + MTC LTR MaLR 197 421 0 3 910 2802 181 48 7 chr5 42723764 42723861 -109813398 - Lx9 LINE L1 -459 7185 7090 3 910 234 0 0 0 chr5 42723861 42723887 -109813372 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3 910 2802 181 48 7 chr5 42723887 42724373 -109812886 - Lx9 LINE L1 -555 7089 6578 3 910 657 275 88 0 chr5 42724422 42724615 -109812644 - Lx9 LINE L1 -1018 6626 6417 3 910 383 189 153 59 chr5 42724620 42724669 -109812590 + Lx9 LINE L1 7423 7480 -164 3 910 459 0 0 0 chr5 42724669 42724720 -109812539 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 910 383 189 153 59 chr5 42724720 42724872 -109812387 + Lx9 LINE L1 7481 7643 -1 3 910 680 279 5 66 chr5 42726282 42726478 -109810781 - B3A SINE B2 0 198 15 3 910 1778 203 34 10 chr5 42726629 42727037 -109810222 + MTD LTR MaLR 1 418 -1 3 910 262 276 48 86 chr5 42727619 42727805 -109809454 + RCHARR1 DNA MER1_type 796 974 0 3 910 272 374 54 30 chr5 42728834 42729002 -109808257 - MIR SINE MIR -11 251 80 3 113 2110 135 0 3 chr5 42729165 42729514 -109807745 + L1_Mm LINE L1 4896 5243 -640 3 911 710 346 35 50 chr5 42729680 42730081 -109807178 - MLT1E1A LTR MaLR 0 680 286 3 911 303 93 0 0 chr5 42730348 42730391 -109806868 + (ATG)n Simple_repeat Simple_repeat 1 43 0 3 911 669 110 0 0 chr5 42731675 42731775 -109805484 + (TC)n Simple_repeat Simple_repeat 1 100 0 3 911 237 233 38 76 chr5 42731968 42732047 -109805212 + L2c LINE L2 3263 3338 -49 3 911 318 335 135 11 chr5 42732582 42732760 -109804499 - MLT1E1A LTR MaLR -292 257 58 3 911 679 210 27 20 chr5 42733105 42733251 -109804008 + ORR1D2 LTR MaLR 1 147 -223 3 911 450 0 0 0 chr5 42733347 42733397 -109803862 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 911 854 283 98 19 chr5 42733411 42733728 -109803531 - MLT1B LTR MaLR -46 344 3 3 911 2984 177 40 8 chr5 42734430 42734954 -109802305 - RLTR20A LTR ERVK 0 541 1 3 911 423 0 0 0 chr5 42735092 42735139 -109802120 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 911 189 0 0 0 chr5 42735229 42735250 -109802009 + (CAA)n Simple_repeat Simple_repeat 3 23 0 3 911 252 0 0 0 chr5 42735250 42735278 -109801981 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 911 1169 308 41 5 chr5 42735285 42735699 -109801560 - Lx7 LINE L1 -393 7303 6875 3 911 439 228 24 65 chr5 42736037 42736072 -109801187 + Lx7 LINE L1 7293 7326 -134 3 911 315 85 0 0 chr5 42736072 42736119 -109801140 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 911 515 204 1 59 chr5 42736119 42736252 -109801007 + Lx7 LINE L1 7577 7696 0 3 911 1892 170 10 79 chr5 42736825 42737228 -109800031 - ORR1C1 LTR MaLR -3 375 1 3 911 216 0 0 0 chr5 42737382 42737406 -109799853 + (TTG)n Simple_repeat Simple_repeat 3 26 0 3 911 351 0 0 0 chr5 42737409 42737448 -109799811 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 911 519 17 0 0 chr5 42737448 42737507 -109799752 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 911 294 295 23 152 chr5 42737737 42737751 -109799508 + PB1D10 SINE Alu 1 115 -2 3 911 442 265 85 8 chr5 42737751 42737869 -109799390 + ID_B1 SINE B4 96 222 -2 3 911 313 207 23 0 chr5 42738456 42738543 -109798716 + CT-rich Low_complexity Low_complexity 4 92 0 3 911 5321 115 19 1 chr5 42738603 42739393 -109797866 + Lx LINE L1 5847 6650 -4 3 911 916 135 7 0 chr5 42739667 42739815 -109797444 + URR1A DNA MER1_type 77 225 -1 3 911 2383 210 27 80 chr5 42739947 42740548 -109796711 + RMER20B LTR ERVK 3 571 -56 3 911 5432 111 75 9 chr5 42740609 42741513 -109795746 - L1_Mus2 LINE L1 0 6566 5603 3 911 3990 53 2 0 chr5 42741511 42742034 -109795225 + L1_Mus2 LINE L1 5045 5568 -315 3 911 355 354 64 29 chr5 42742424 42742628 -109794631 + L4 LINE RTE 1635 1845 -184 3 911 406 114 25 0 chr5 42743526 42743605 -109793654 + (TATG)n Simple_repeat Simple_repeat 2 82 0 3 911 902 42 0 0 chr5 42743637 42743757 -109793502 + L1VL2 LINE L1 630 749 -5586 3 911 300 161 0 0 chr5 42743834 42743896 -109793363 + CT-rich Low_complexity Low_complexity 2 63 0 3 911 234 227 0 0 chr5 42743895 42743970 -109793289 + (TG)n Simple_repeat Simple_repeat 2 76 0 3 911 5598 88 82 15 chr5 42744064 42745648 -109791611 + L1VL2 LINE L1 116 1826 -1789 3 911 306 315 0 11 chr5 42745792 42745882 -109791377 - PB1D10 SINE Alu -2 115 27 3 911 1640 53 14 0 chr5 42746515 42746724 -109790535 - L1Md_F2 LINE L1 -14 6568 6357 3 911 2004 43 4 0 chr5 42746814 42747069 -109790190 + L1Md_F2 LINE L1 5331 5586 -297 3 911 8418 32 3 0 chr5 42747069 42748058 -109789201 + L1Md_F2 LINE L1 5587 6578 -4 3 911 25 65 0 0 chr5 42748186 42748232 -109789027 + AT_rich Low_complexity Low_complexity 1 46 0 3 911 412 93 27 0 chr5 42748268 42748343 -109788916 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 911 237 358 10 21 chr5 42748534 42748649 -109788610 + MLT2B4 LTR ERVL 19 136 -379 3 911 325 264 43 94 chr5 42748835 42748859 -109788400 - MLT2B1 LTR ERVL -389 131 1 3 911 357 260 9 88 chr5 42748859 42748973 -109788286 - MTEa LTR MaLR -274 105 1 3 911 275 322 87 0 chr5 42749379 42749494 -109787765 + MER58B DNA MER1_type 217 341 0 3 911 7592 43 1 10 chr5 42749771 42750937 -109786322 - L1Md_F2 LINE L1 0 6582 5432 3 911 276 224 0 0 chr5 42751035 42751102 -109786157 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 3 911 233 365 9 0 chr5 42751102 42751209 -109786050 - MIR SINE MIR -58 204 97 3 911 789 301 97 58 chr5 42752033 42752393 -109784866 + Tigger7 DNA MER2_type 1 374 -2117 3 911 21 36 0 0 chr5 42753577 42753605 -109783654 + AT_rich Low_complexity Low_complexity 1 28 0 3 911 836 287 123 101 chr5 42753854 42754269 -109782990 + MLT2B2 LTR ERVL 1 424 -40 3 911 770 268 46 37 chr5 42754493 42754839 -109782420 + Lx7 LINE L1 5626 5975 -1669 3 911 232 346 123 0 chr5 42755279 42755360 -109781899 + B3 SINE B2 96 186 -30 3 911 986 335 72 43 chr5 42755408 42755953 -109781306 - MER74A LTR ERVL -52 506 1 3 911 387 56 28 14 chr5 42756749 42756821 -109780438 + (TTTTG)n Simple_repeat Simple_repeat 2 74 0 3 911 28509 111 27 2 chr5 42756973 42763000 -109774259 - L1_Mus1 LINE L1 -4 6563 380 3 911 4781 84 0 2 chr5 42763018 42763659 -109773600 - L1_Mus2 LINE L1 -18 6548 5909 3 911 640 66 11 11 chr5 42763673 42763765 -109773494 + RLTR11A2 LTR ERVK 433 524 -3 3 911 225 259 62 0 chr5 42763779 42763860 -109773399 - L1MA4A LINE L1 -158 6145 6060 3 911 374 241 47 107 chr5 42765642 42765791 -109771468 - B3A SINE B2 0 198 59 3 911 409 286 0 30 chr5 42765819 42765920 -109771339 - B4 SINE B4 -192 100 3 3 911 447 297 146 39 chr5 42766106 42766414 -109770845 - Lx8 LINE L1 -2 7471 7131 3 911 801 74 0 0 chr5 42766416 42766538 -109770721 + (TC)n Simple_repeat Simple_repeat 1 122 0 3 911 233 269 0 0 chr5 42766538 42766590 -109770669 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 3 911 498 316 28 21 chr5 42766837 42767122 -109770137 - L1M2 LINE L1 -1219 4924 4638 3 911 33692 43 2 3 chr5 42767121 42772350 -109764909 + L1Md_T LINE L1 271 5589 -297 3 911 8533 30 0 0 chr5 42772350 42773346 -109763913 + L1Md_T LINE L1 5590 6585 0 3 911 307 244 41 0 chr5 42773413 42773547 -109763712 - L1M2 LINE L1 -1497 4646 4506 3 911 1154 270 52 32 chr5 42773548 42773896 -109763363 + ORR1E LTR MaLR 1 355 -4 3 911 895 301 13 0 chr5 42773909 42774135 -109763124 + ORR1E-int LTR MaLR 9 237 -1343 3 911 1816 304 72 32 chr5 42774151 42774807 -109762452 + ORR1E-int LTR MaLR 307 988 -592 3 911 852 217 0 0 chr5 42774806 42774963 -109762296 - B3A SINE B2 -41 157 1 3 911 433 265 8 41 chr5 42774965 42775204 -109762055 - L1M2 LINE L1 -2375 3768 3494 3 911 363 312 43 11 chr5 42775249 42775531 -109761728 - L1M2 LINE L1 -2846 3297 3007 3 911 6155 92 29 19 chr5 42775516 42776452 -109760807 - L1Md_F2 LINE L1 -2 6580 5636 3 911 249 273 45 0 chr5 42776502 42776612 -109760647 - L1M2 LINE L1 -3142 3001 2887 3 911 249 414 17 8 chr5 42777155 42777272 -109759987 - B4 SINE B4 -72 220 103 3 911 1127 133 55 0 chr5 42777318 42777499 -109759760 - B2_Mm2 SINE B2 -3 192 2 3 911 656 24 12 0 chr5 42777572 42777654 -109759605 + (TC)n Simple_repeat Simple_repeat 2 84 0 3 911 989 76 0 127 chr5 42777654 42777820 -109759439 - B1_Mus1 SINE Alu -3 145 1 3 911 374 324 9 0 chr5 42778187 42778295 -109758964 - MER94 DNA AcHobo -4 130 22 3 911 202 270 34 34 chr5 42779662 42779781 -109757478 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 3 911 248 331 38 46 chr5 42781080 42781236 -109756023 - MIRc SINE MIR -85 183 27 3 911 285 51 0 0 chr5 42781274 42781313 -109755946 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 911 192 179 0 0 chr5 42781725 42781764 -109755495 + (CAT)n Simple_repeat Simple_repeat 2 40 0 3 911 238 300 105 32 chr5 42782200 42782324 -109754935 - MIR3 SINE MIR -11 197 65 3 911 204 158 0 0 chr5 42782706 42782744 -109754515 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 911 4954 75 31 9 chr5 42783409 42784085 -109753174 - L1_Mus3 LINE L1 -2 6636 5946 3 911 331 289 62 62 chr5 42784706 42784835 -109752424 + MLT1I LTR MaLR 275 403 -8 3 911 227 241 0 0 chr5 42785523 42785577 -109751682 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 911 2088 94 61 10 chr5 42785593 42785906 -109751353 + ORR1A4 LTR MaLR 1 329 0 3 911 367 335 171 0 chr5 42786263 42786421 -109750838 + MLT1H LTR MaLR 120 304 -245 3 911 347 348 20 70 chr5 42786396 42786597 -109750662 - MLT1F2 LTR MaLR -347 213 23 3 911 850 290 10 0 chr5 42786798 42787005 -109750254 - B3 SINE B2 -7 209 1 3 911 184 355 51 60 chr5 42787017 42787134 -109750125 - MIRm SINE MIR -110 166 51 4 911 269 352 116 7 chr5 42788575 42788721 -109748538 - MER5A DNA MER1_type -2 187 26 4 911 336 48 0 0 chr5 42789596 42789638 -109747621 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 911 255 412 12 36 chr5 42790249 42790415 -109746844 + MER20B DNA MER1_type 33 194 -589 4 911 636 311 28 6 chr5 42790461 42790642 -109746617 + ID_B1 SINE B4 12 196 -28 4 911 274 356 51 76 chr5 42790674 42790832 -109746427 + RSINE1 SINE B4 12 165 0 4 911 205 317 134 0 chr5 42791311 42791393 -109745866 - MIR SINE MIR -22 240 148 4 911 248 297 89 103 chr5 42793721 42793935 -109743324 - ORR1D2 LTR MaLR -2 368 158 4 911 2487 300 37 19 chr5 42794332 42795331 -109741928 - Lx7 LINE L1 -687 7009 5993 4 911 279 163 0 20 chr5 42795792 42795842 -109741417 - Lx3B LINE L1 -234 6739 6691 4 911 1121 188 17 9 chr5 42795842 42796073 -109741186 + Lx3B LINE L1 6739 6971 -2 4 911 441 0 0 0 chr5 42796211 42796260 -109740999 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 911 3257 177 43 7 chr5 42796371 42796958 -109740301 - RMER20B LTR ERVK -11 616 9 4 911 219 318 78 74 chr5 42797549 42797766 -109739493 - MIRb SINE MIR -6 262 45 4 911 3407 87 2 11 chr5 42797939 42798413 -109738846 + L1Md_F2 LINE L1 6113 6582 0 4 911 255 222 56 0 chr5 42798451 42798541 -109738718 + Lx9 LINE L1 7492 7586 -58 4 911 209 281 186 10 chr5 42798935 42799032 -109738227 + MIRb SINE MIR 64 177 -91 4 911 263 296 29 39 chr5 42799103 42799205 -109738054 - MIRb SINE MIR -55 213 113 4 911 924 98 0 0 chr5 42799272 42799405 -109737854 + (GGAGA)n Simple_repeat Simple_repeat 5 137 0 4 911 264 241 0 0 chr5 42799931 42800010 -109737249 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 911 409 300 40 67 chr5 42800429 42800579 -109736680 + MLT1A1 LTR MaLR 259 404 -4 4 911 310 342 123 8 chr5 42800681 42800917 -109736342 + Charlie13a DNA Charlie 112 374 -1140 4 911 943 314 171 36 chr5 42800933 42801796 -109735463 + Charlie13a DNA Charlie 416 1395 -119 4 911 357 159 0 0 chr5 42802253 42802316 -109734943 + GA-rich Low_complexity Low_complexity 5 67 0 4 911 1009 136 6 6 chr5 42802316 42802494 -109734765 + (GAA)n Simple_repeat Simple_repeat 3 180 0 4 911 201 176 0 0 chr5 42803315 42803349 -109733910 + A-rich Low_complexity Low_complexity 1 34 0 4 911 198 270 129 68 chr5 42804096 42804243 -109733016 - MIRc SINE MIR -2 266 111 4 911 526 305 146 31 chr5 42805105 42805393 -109731866 - MLT2B4 LTR ERVL -231 325 5 4 911 204 311 53 88 chr5 42806578 42806691 -109730568 + L2b LINE L2 3262 3370 -5 4 911 251 162 0 0 chr5 42806738 42806775 -109730484 - tRNA-Trp-TGG tRNA tRNA -38 37 1 4 911 449 293 113 14 chr5 42807007 42807149 -109730110 + ID_B1 SINE B4 66 221 -3 4 911 1742 165 57 11 chr5 42807647 42807996 -109729263 + ORR1B2 LTR MaLR 1 365 -2 4 911 254 278 22 0 chr5 42808005 42808095 -109729164 + (TATATG)n Simple_repeat Simple_repeat 2 93 0 4 911 295 351 26 0 chr5 42809054 42809168 -109728091 + MER45R DNA Tip100 1 117 -1464 4 911 663 131 39 0 chr5 42809306 42809436 -109727823 + CT-rich Low_complexity Low_complexity 3 137 0 4 911 2087 202 125 21 chr5 42809722 42810243 -109727016 + Lx7 LINE L1 6841 7415 -281 4 911 412 230 284 40 chr5 42811274 42811446 -109725813 - B3 SINE B2 -1 215 2 4 911 1193 281 74 22 chr5 42811589 42811817 -109725442 - L1M3 LINE L1 -1186 4954 4704 4 911 378 0 0 0 chr5 42811817 42811859 -109725400 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 911 1193 281 74 22 chr5 42811859 42812308 -109724951 - L1M3 LINE L1 -1437 4703 4242 4 911 606 151 0 0 chr5 42812341 42812447 -109724812 + (TA)n Simple_repeat Simple_repeat 2 107 0 4 911 532 279 4 48 chr5 42812497 42812725 -109724534 + Lx9 LINE L1 5453 5639 -208 4 911 1425 205 101 99 chr5 42812762 42813259 -109724000 - RLTR11A LTR ERVK -30 498 1 4 911 957 242 53 11 chr5 42813264 42813548 -109723711 + Lx9 LINE L1 5676 5971 -1673 4 911 1030 73 54 113 chr5 42813692 42813878 -109723381 + B2_Mm2 SINE B2 16 190 -5 4 911 189 241 0 0 chr5 42813921 42813975 -109723284 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 911 538 317 54 5 chr5 42814096 42814299 -109722960 + Lx9 LINE L1 6426 6638 -1006 4 911 360 318 56 14 chr5 42814303 42814517 -109722742 - L1VL2 LINE L1 -5981 354 132 4 911 257 200 0 16 chr5 42814621 42814682 -109722577 - L1VL2 LINE L1 -5753 582 523 4 911 267 289 41 178 chr5 42814892 42815111 -109722148 - ORR1E LTR MaLR -55 304 116 4 911 366 298 16 0 chr5 42815234 42815358 -109721901 - Ricksha_c DNA MuDR -1593 455 330 4 911 1750 191 53 66 chr5 42815377 42815757 -109721502 - ORR1C1 LTR MaLR -1 377 3 4 911 231 36 0 0 chr5 42816159 42816187 -109721072 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 4 911 1068 97 6 18 chr5 42816709 42816877 -109720382 + Lx2 LINE L1 6478 6643 -354 4 911 1276 117 82 0 chr5 42816877 42817083 -109720176 + Lx2 LINE L1 6775 6997 0 4 911 1179 289 10 118 chr5 42817853 42818269 -109718990 + MTE2a LTR MaLR 1 371 -8 4 911 387 304 98 57 chr5 42818602 42818867 -109718392 - Lx9 LINE L1 -197 7447 7172 4 911 12804 66 1 2 chr5 42818867 42821278 -109715981 - L1Md_F2 LINE L1 -13 6569 4164 4 911 1934 302 59 32 chr5 42821267 42822067 -109715192 - Lx9 LINE L1 -448 7196 6376 4 911 298 323 45 30 chr5 42822236 42822434 -109714825 - Lx9 LINE L1 -1595 6049 5849 4 911 267 79 0 0 chr5 42824243 42824281 -109712978 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 4 911 360 0 0 0 chr5 42824753 42824793 -109712466 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 911 504 0 0 0 chr5 42824793 42824848 -109712411 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 911 1423 265 44 6 chr5 42827041 42827379 -109709880 + MTD LTR MaLR 13 363 -56 4 911 7575 43 4 2 chr5 42827475 42828808 -109708451 - L1Md_F2 LINE L1 -2 6580 5244 4 911 4194 47 0 14 chr5 42828808 42829367 -109707892 + L1Md_F2 LINE L1 4654 5204 -679 4 911 349 254 0 0 chr5 42829367 42829434 -109707825 + MTD LTR MaLR 351 417 -2 4 911 930 296 64 44 chr5 42829480 42830119 -109707140 - L1MC1 LINE L1 -334 5999 5348 4 911 766 43 0 0 chr5 42830126 42830219 -109707040 + MT2_Mm LTR ERVL 1 93 -400 4 911 1677 10 0 0 chr5 42830213 42830407 -109706852 + MTA_Mm LTR MaLR 203 396 0 4 911 9135 33 4 2 chr5 42830407 42831503 -109705756 + MTA_Mm-int LTR MaLR 1 1098 0 4 911 3523 15 2 0 chr5 42831503 42831898 -109705361 + MTA_Mm LTR MaLR 1 396 0 4 911 481 280 120 34 chr5 42831915 42832299 -109704960 - L1MC1 LINE L1 -820 5326 4910 4 911 312 333 0 20 chr5 42832589 42832690 -109704569 - L1M2 LINE L1 -1140 5003 4905 4 911 231 114 0 0 chr5 42833074 42833118 -109704141 + (CAGA)n Simple_repeat Simple_repeat 4 47 0 4 911 332 151 0 0 chr5 42833118 42833171 -109704088 + HAL1-3A_ME LINE L1 1976 2028 -830 4 911 1005 257 121 27 chr5 42833605 42833937 -109703322 + ORR1D2 LTR MaLR 1 363 -7 4 911 2882 55 0 0 chr5 42834036 42834382 -109702877 - ORR1A1 LTR MaLR 0 346 1 4 911 21 0 0 0 chr5 42835218 42835239 -109702020 + AT_rich Low_complexity Low_complexity 1 21 0 4 911 241 361 0 0 chr5 42835570 42835692 -109701567 + Charlie5 DNA MER1_type 2391 2512 -112 4 911 2090 230 49 34 chr5 42836658 42837212 -109700047 - Lx7 LINE L1 -1225 6471 5910 4 911 214 205 0 0 chr5 42837564 42837603 -109699656 + A-rich Low_complexity Low_complexity 1 39 0 4 911 245 304 25 12 chr5 42838333 42838413 -109698846 + Tigger5 DNA MER2_type 8 88 -2318 4 911 385 330 54 38 chr5 42838735 42838847 -109698412 + L1ME2 LINE L1 5777 5887 -277 4 911 2010 40 4 16 chr5 42838847 42839100 -109698159 - L1Md_F3 LINE L1 0 6584 6335 4 911 385 330 54 38 chr5 42839100 42839356 -109697903 + L1ME2 LINE L1 5888 6151 -13 4 911 207 0 0 0 chr5 42839743 42839766 -109697493 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 911 432 0 0 0 chr5 42840442 42840490 -109696769 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 911 294 314 80 91 chr5 42841471 42841646 -109695613 + MIRc SINE MIR 12 187 -81 4 911 1473 216 117 21 chr5 42841894 42842399 -109694860 + RMER4B LTR ERVK 1 585 0 4 911 2159 175 5 13 chr5 42842954 42843331 -109693928 + MTB_Mm LTR MaLR 7 380 -27 4 911 483 294 71 0 chr5 42843344 42843470 -109693789 - MER20 DNA MER1_type -59 160 26 4 911 450 0 0 0 chr5 42844498 42844548 -109692711 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 911 260 351 57 28 chr5 42844806 42844982 -109692277 + B3A SINE B2 2 182 -16 4 911 300 252 55 64 chr5 42845423 42845533 -109691726 - MER63B DNA AcHobo -19 417 309 4 911 7138 45 8 0 chr5 42846463 42847334 -109689925 - L1Md_F2 LINE L1 -3 6579 5702 4 911 620 172 121 0 chr5 42847363 42847479 -109689780 - B3 SINE B2 -86 130 1 4 911 450 263 27 53 chr5 42847539 42847554 -109689705 + ID_B1 SINE B4 78 131 -161 4 911 716 200 8 0 chr5 42847554 42847684 -109689575 + B1_Mur2 SINE Alu 13 143 -6 4 911 450 263 27 53 chr5 42847684 42847714 -109689545 + ID_B1 SINE B4 132 254 -38 4 911 276 278 112 34 chr5 42848597 42848776 -109688483 - Lx8 LINE L1 -5 7468 7276 4 911 811 287 70 26 chr5 42848887 42849116 -109688143 - MTEb LTR MaLR -140 239 1 4 911 1222 216 21 170 chr5 42849302 42849732 -109687527 - ORR1C1 LTR MaLR -12 366 1 4 911 333 0 0 0 chr5 42849760 42849797 -109687462 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 4 911 240 259 19 0 chr5 42850898 42850952 -109686307 + GA-rich Low_complexity Low_complexity 2 56 0 4 911 649 195 28 89 chr5 42851293 42851473 -109685786 + ORR1B2 LTR MaLR 1 169 -198 4 911 327 106 45 0 chr5 42851473 42851539 -109685720 + CT-rich Low_complexity Low_complexity 1 69 0 4 911 1161 192 10 0 chr5 42851541 42851739 -109685520 + ORR1B2 LTR MaLR 160 359 -8 4 911 2379 196 32 28 chr5 42851944 42852443 -109684816 + RLTR24 LTR ERV1 22 522 -7 4 911 295 370 59 16 chr5 42852670 42852857 -109684402 - MIRb SINE MIR -40 228 34 4 911 474 289 96 0 chr5 42853223 42853358 -109683901 + RSINE1 SINE B4 2 149 -16 4 911 241 418 21 0 chr5 42853559 42853700 -109683559 + MIRb SINE MIR 80 223 -45 4 911 855 307 91 6 chr5 42853910 42854241 -109683018 + MLT2B4 LTR ERVL 9 367 -189 4 911 837 176 25 0 chr5 42854516 42854675 -109682584 + RMER15 LTR ERVL 10 172 -403 4 911 1994 187 52 37 chr5 42854730 42854929 -109682330 + RMER15 LTR ERVL 165 352 -223 4 911 513 0 0 0 chr5 42854929 42854986 -109682273 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 911 1994 187 52 37 chr5 42854986 42855191 -109682068 + RMER15 LTR ERVL 353 574 -1 4 911 963 119 12 12 chr5 42855438 42855600 -109681659 - L1_Mus3 LINE L1 -7 6631 6470 4 911 2346 68 4 18 chr5 42855607 42855945 -109681314 + L1_Mus3 LINE L1 6173 6472 -166 4 911 234 62 0 0 chr5 42856408 42856440 -109680819 + (TCTCTG)n Simple_repeat Simple_repeat 2 33 0 5 911 2108 192 72 14 chr5 42856929 42857053 -109680206 - Lx9 LINE L1 -8 7636 7517 5 911 234 0 0 0 chr5 42857053 42857079 -109680180 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 911 2108 192 72 14 chr5 42857079 42857440 -109679819 - Lx9 LINE L1 -128 7516 7124 5 911 366 241 0 46 chr5 42857459 42857546 -109679713 + Lx9 LINE L1 6366 6448 -1196 5 911 432 0 0 0 chr5 42857554 42857602 -109679657 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 911 21 71 0 0 chr5 42858051 42858093 -109679166 + AT_rich Low_complexity Low_complexity 1 42 0 5 911 605 96 0 11 chr5 42858913 42859008 -109678251 + (TA)n Simple_repeat Simple_repeat 1 94 0 5 911 243 268 0 53 chr5 42859396 42859471 -109677788 - MLT2C2 LTR ERVL -210 254 184 5 113 609 176 0 0 chr5 42860473 42860649 -109676610 + CT-rich Low_complexity Low_complexity 1 176 0 5 912 183 80 0 0 chr5 42860649 42860674 -109676585 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 912 1033 299 123 7 chr5 42860683 42861097 -109676162 - MT2A LTR ERVL -71 462 1 5 912 618 14 0 0 chr5 42862184 42862255 -109675004 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 5 912 552 15 0 0 chr5 42862259 42862324 -109674935 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 912 354 369 23 0 chr5 42863109 42863239 -109674020 + B1F2 SINE Alu 15 147 -2 5 912 447 63 0 0 chr5 42863681 42863744 -109673515 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 912 351 65 0 0 chr5 42864226 42864272 -109672987 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 912 213 139 0 0 chr5 42864278 42864321 -109672938 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 5 912 213 296 0 0 chr5 42864729 42864783 -109672476 + GA-rich Low_complexity Low_complexity 3 56 0 5 912 1878 108 7 0 chr5 42865027 42865313 -109671946 + L1_Mm LINE L1 2164 2451 -3432 5 912 4013 77 28 2 chr5 42865313 42865848 -109671411 + L1_Mus2 LINE L1 6018 6566 0 5 912 486 306 92 67 chr5 42867103 42867361 -109669898 + MLT1A LTR MaLR 81 325 -40 5 912 252 0 22 65 chr5 42869005 42869051 -109668208 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 5 912 896 287 136 46 chr5 42870192 42870671 -109666588 + RLTR26 LTR ERVK 1 575 -52 5 912 288 0 0 0 chr5 42871354 42871386 -109665873 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 912 604 350 14 59 chr5 42871497 42871783 -109665476 - B4A SINE B4 -18 274 2 5 912 194 285 760 16 chr5 42872878 42873003 -109664256 + MIRb SINE MIR 43 260 -8 5 912 267 281 62 0 chr5 42873219 42873283 -109663976 + ID4 SINE ID 14 81 -2 5 912 294 362 47 0 chr5 42874744 42874893 -109662366 - LTR79 LTR ERVL -4 523 368 5 912 371 211 78 17 chr5 42875529 42875645 -109661614 - Lx9 LINE L1 -153 7491 7369 5 912 692 303 46 135 chr5 42875646 42876062 -109661197 + MTE2a LTR MaLR 1 379 0 5 912 200 264 75 0 chr5 42876080 42876133 -109661126 - L2c LINE L2 -44 3343 3287 5 912 1479 323 121 38 chr5 42876767 42877887 -109659372 - Zaphod DNA Tip100 -2728 1303 91 5 912 416 19 19 0 chr5 42878110 42878163 -109659096 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 912 249 321 102 22 chr5 42878665 42878802 -109658457 - L2a LINE L2 0 3426 3279 5 912 695 266 70 0 chr5 42878854 42879053 -109658206 + B3 SINE B2 3 215 -1 5 912 35115 81 1 10 chr5 42880003 42886217 -109651042 - L1Md_F2 LINE L1 0 6582 436 5 912 221 380 109 31 chr5 42886217 42886410 -109650849 - MIRb SINE MIR -60 208 1 5 912 234 143 41 0 chr5 42886666 42886715 -109650544 - Lx8 LINE L1 -12 7461 7411 5 912 226 258 65 0 chr5 42886999 42887061 -109650198 + MLT1B LTR MaLR 321 386 -4 5 912 268 365 61 56 chr5 42888852 42889032 -109648227 + MER20 DNA MER1_type 11 191 -28 5 912 523 157 9 9 chr5 42889142 42889251 -109648008 + CT-rich Low_complexity Low_complexity 3 111 0 5 912 1250 286 26 5 chr5 42889583 42889963 -109647296 - Lx9 LINE L1 -235 7409 7022 5 912 693 193 0 0 chr5 42889963 42890103 -109647156 + T-rich Low_complexity Low_complexity 1 140 0 5 912 541 194 29 15 chr5 42891673 42891809 -109645450 - Lx9 LINE L1 -608 7036 6899 5 912 232 245 128 0 chr5 42891998 42892100 -109645159 - L1_Mur3 LINE L1 -1996 3884 3770 5 912 189 0 0 0 chr5 42893143 42893164 -109644095 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 5 912 378 388 81 0 chr5 42894377 42894586 -109642673 - MIRb SINE MIR 0 268 43 5 912 216 0 0 0 chr5 42894945 42894969 -109642290 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 912 393 357 75 57 chr5 42894995 42895313 -109641946 - LTR40a LTR ERVL -37 482 159 5 912 1015 149 34 0 chr5 42896008 42896183 -109641076 - URR1A DNA MER1_type 0 226 46 5 912 485 293 77 19 chr5 42897235 42897444 -109639815 - Lx8 LINE L1 -5 7468 7248 5 912 2300 90 51 11 chr5 42897564 42897914 -109639345 - L1Md_F2 LINE L1 -11 6571 6208 5 912 27 0 0 0 chr5 42899493 42899520 -109637739 + AT_rich Low_complexity Low_complexity 1 27 0 5 912 288 0 0 0 chr5 42899669 42899701 -109637558 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 912 257 244 0 13 chr5 42899701 42899780 -109637479 + A-rich Low_complexity Low_complexity 2 79 0 5 912 1022 91 0 34 chr5 42901738 42901873 -109635386 + B1_Mus2 SINE Alu 5 135 -12 5 912 243 0 0 0 chr5 42901873 42901900 -109635359 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 912 1022 91 0 34 chr5 42901900 42901912 -109635347 + B1_Mus2 SINE Alu 136 147 0 5 912 270 56 0 0 chr5 42901939 42901975 -109635284 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 912 182 337 86 11 chr5 42902381 42902474 -109634785 - L2b LINE L2 -46 3329 3230 5 912 948 298 43 86 chr5 42903335 42903731 -109633528 + MTE2a LTR MaLR 1 379 0 5 912 919 274 139 45 chr5 42905141 42905428 -109631831 + MTE2b LTR MaLR 31 344 -35 5 912 639 253 237 28 chr5 42905480 42905772 -109631487 - MTD LTR MaLR -8 411 1 5 912 233 282 45 18 chr5 42905902 42906014 -109631245 + Charlie5 DNA MER1_type 7 121 -2503 5 912 363 148 0 0 chr5 42906671 42906759 -109630500 + (GA)n Simple_repeat Simple_repeat 1 88 0 5 912 274 368 54 18 chr5 42907555 42907721 -109629538 + L2 LINE L2 1836 2007 -1412 5 912 539 258 85 13 chr5 42907779 42907868 -109629391 - RLTR20C LTR ERVK -1 550 452 5 912 279 0 0 0 chr5 42907868 42907899 -109629360 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 912 1074 217 266 104 chr5 42907899 42908290 -109628969 - RLTR20C LTR ERVK -100 451 1 5 912 183 80 0 0 chr5 42908676 42908701 -109628558 + (TA)n Simple_repeat Simple_repeat 1 25 0 5 912 1037 116 7 0 chr5 42909405 42909551 -109627708 - B1_Mus2 SINE Alu 0 147 1 5 912 3767 5 0 0 chr5 42910480 42910899 -109626360 - L1Md_A LINE L1 0 6582 6164 5 912 788 234 18 29 chr5 42911326 42911599 -109625660 + L1_Rod LINE L1 1312 1581 -4266 5 912 1905 221 30 58 chr5 42911598 42912198 -109625061 + Lx6 LINE L1 5666 6248 -1212 5 912 778 171 97 22 chr5 42912382 42912567 -109624692 - Lx3B LINE L1 -6 6967 6769 5 912 250 361 97 35 chr5 42913623 42913996 -109623263 + L2a LINE L2 3021 3416 -10 5 912 941 352 56 19 chr5 42917349 42917923 -109619336 - Tigger13a DNA MER2_type 0 771 177 5 912 4463 129 113 25 chr5 42918590 42919423 -109617836 + RMER17A2 LTR ERVK 1 906 0 5 912 230 219 16 0 chr5 42919454 42919518 -109617741 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 912 1349 307 54 5 chr5 42920224 42920610 -109616649 + MTD LTR MaLR 15 419 0 5 912 1671 191 110 8 chr5 42921045 42921426 -109615833 + MTC LTR MaLR 2 421 0 5 912 1432 244 39 31 chr5 42923005 42923419 -109613840 + MTD LTR MaLR 3 419 0 5 912 387 0 0 0 chr5 42923471 42923514 -109613745 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 912 556 257 13 0 chr5 42923713 42923865 -109613394 + Lx8 LINE L1 6961 7114 -359 5 912 272 297 44 60 chr5 42925153 42925404 -109611855 + L1M2 LINE L1 4692 4938 -1205 5 912 332 49 0 0 chr5 42926458 42926499 -109610760 - HAL1-3A_ME LINE L1 -842 2016 1976 5 912 510 108 0 0 chr5 42926500 42926583 -109610676 + (TCTCTG)n Simple_repeat Simple_repeat 4 86 0 5 912 527 269 40 40 chr5 42926772 42926896 -109610363 - ID_B1 SINE B4 -9 215 92 5 912 323 324 55 28 chr5 42927187 42927368 -109609891 + MIR SINE MIR 74 259 -3 5 912 198 91 0 0 chr5 42927418 42927451 -109609808 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 5 912 288 276 107 49 chr5 42928608 42928730 -109608529 + B4 SINE B4 1 129 -163 5 912 198 71 0 0 chr5 42928787 42928815 -109608444 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 912 421 292 51 0 chr5 42929636 42929773 -109607486 + B1_Mur2 SINE Alu 3 146 -3 5 912 565 283 0 8 chr5 42929783 42929911 -109607348 + RSINE1 SINE B4 5 131 -34 5 912 453 66 0 0 chr5 42929933 42929994 -109607265 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 912 35393 62 3 5 chr5 42930541 42936792 -109600467 - L1Md_F3 LINE L1 -14 6570 328 5 912 320 333 42 69 chr5 42936843 42937123 -109600136 - MTEa LTR MaLR -23 356 98 5 912 324 292 60 43 chr5 42937866 42938167 -109599092 + L1MB1 LINE L1 4821 5126 -1014 5 912 2108 188 29 20 chr5 42938271 42938726 -109598533 - Lx4B LINE L1 -5 7053 6595 5 912 230 179 47 82 chr5 42939418 42939503 -109597756 + L1MB1 LINE L1 5308 5389 -779 5 912 521 311 0 7 chr5 42939519 42939655 -109597604 - ID_B1 SINE B4 -2 222 88 5 912 733 272 185 30 chr5 42939660 42940330 -109596929 + L1MB1 LINE L1 5383 6156 -12 5 912 240 175 0 0 chr5 42940425 42940488 -109596771 + CT-rich Low_complexity Low_complexity 2 64 0 5 912 1128 84 0 0 chr5 42940489 42940668 -109596591 + (TC)n Simple_repeat Simple_repeat 2 180 0 5 912 213 39 0 0 chr5 42940668 42940693 -109596566 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 912 312 232 22 109 chr5 42941425 42941517 -109595742 - HAL1-3A_ME LINE L1 -809 2049 1966 6 912 754 297 22 36 chr5 42941551 42941827 -109595432 - B4A SINE B4 -18 274 3 6 912 7257 89 10 1 chr5 42942039 42943140 -109594119 - L1_Mus3 LINE L1 -2 6636 5526 6 912 342 383 84 42 chr5 42944371 42944795 -109592464 + LTR16B2 LTR ERVL 1 463 0 6 912 556 70 11 11 chr5 42945567 42945654 -109591605 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 6 912 220 138 31 0 chr5 42945810 42945875 -109591384 + T-rich Low_complexity Low_complexity 5 71 0 6 912 827 270 7 22 chr5 42946031 42946300 -109590959 - L1_Rod LINE L1 -684 5163 4899 6 912 1786 237 24 83 chr5 42946289 42946574 -109590685 + Lx9 LINE L1 5103 5354 -493 6 912 2113 62 0 46 chr5 42946574 42946880 -109590379 + L1Md_F2 LINE L1 6291 6582 0 6 912 1786 237 24 83 chr5 42946880 42947230 -109590029 + Lx9 LINE L1 5355 5700 -147 6 912 282 29 0 0 chr5 42947241 42947276 -109589983 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 912 513 0 0 0 chr5 42947276 42947332 -109589927 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 912 423 282 39 0 chr5 42947333 42947436 -109589823 + Lx9 LINE L1 6358 6464 -1180 6 912 1183 157 71 5 chr5 42947616 42947827 -109589432 + URR1B DNA MER1_type 1 225 0 6 912 285 302 88 63 chr5 42947928 42948087 -109589172 + MER5A DNA MER1_type 14 176 -13 6 912 268 323 103 10 chr5 42949299 42949396 -109587863 + MER58A DNA MER1_type 6 111 -113 6 912 320 232 22 34 chr5 42949429 42949518 -109587741 - L1MEc LINE L1 -5208 1192 1105 6 912 564 89 0 0 chr5 42949572 42949651 -109587608 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 6 912 28 0 0 0 chr5 42949750 42949778 -109587481 + AT_rich Low_complexity Low_complexity 1 28 0 6 912 420 35 0 0 chr5 42950023 42950080 -109587179 - L1Md_T LINE L1 -2 6580 6524 6 912 241 260 0 0 chr5 42950086 42950136 -109587123 - B1F2 SINE Alu -97 52 3 6 912 318 258 21 105 chr5 42950174 42950317 -109586942 - L1MEc LINE L1 -5484 916 786 6 912 1255 254 71 3 chr5 42950456 42950795 -109586464 - Lx6 LINE L1 -351 7109 6748 6 912 182 333 34 51 chr5 42951438 42951555 -109585704 - L2c LINE L2 0 3387 3273 6 912 201 94 0 0 chr5 42952624 42952656 -109584603 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 912 243 279 107 114 chr5 42952659 42952930 -109584329 - MER44A DNA MER2_type 0 339 71 6 912 495 60 0 0 chr5 42952949 42953016 -109584243 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 912 325 345 19 90 chr5 42953467 42953623 -109583636 - MLT1D LTR MaLR -76 429 285 6 912 450 314 81 15 chr5 42953636 42953833 -109583426 - MLT1D LTR MaLR -295 210 1 6 912 671 157 21 35 chr5 42953992 42954137 -109583122 - L1_Mur2 LINE L1 -1637 4240 4098 6 912 9027 154 11 39 chr5 42954134 42956088 -109581171 + Lx LINE L1 4221 6104 -550 6 912 339 296 18 27 chr5 42956275 42956386 -109580873 - Lx8 LINE L1 -289 7184 7075 6 912 528 298 129 54 chr5 42956382 42956623 -109580636 + Lx8 LINE L1 7181 7439 -34 6 912 23 54 0 0 chr5 42956635 42956672 -109580587 + AT_rich Low_complexity Low_complexity 1 37 0 6 912 916 253 167 13 chr5 42956770 42957152 -109580107 - Lx9 LINE L1 -163 7481 7041 6 912 479 218 0 57 chr5 42957151 42957292 -109579967 + Lx9 LINE L1 7510 7642 -2 6 912 400 266 31 31 chr5 42958314 42958442 -109578817 - Lx8 LINE L1 -385 7088 6961 6 912 350 201 5 167 chr5 42960451 42960672 -109576587 + RMER17C LTR ERVK 91 275 -135 6 912 21 0 0 0 chr5 42960721 42960742 -109576517 + AT_rich Low_complexity Low_complexity 1 21 0 6 912 402 74 0 0 chr5 42960753 42960807 -109576452 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 912 644 292 27 0 chr5 42960807 42960992 -109576267 - B3A SINE B2 -8 190 1 6 912 1930 58 8 4 chr5 42961072 42961331 -109575928 + L1_Mus3 LINE L1 6373 6632 -6 6 912 25 51 0 0 chr5 42961401 42961440 -109575819 + AT_rich Low_complexity Low_complexity 1 39 0 6 912 814 128 89 30 chr5 42961642 42961811 -109575448 + Lx3A LINE L1 6789 6967 -14 6 912 477 0 0 0 chr5 42961814 42961867 -109575392 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 6 912 21 0 0 0 chr5 42962225 42962246 -109575013 + AT_rich Low_complexity Low_complexity 1 21 0 6 912 970 264 67 72 chr5 42962258 42962387 -109574872 + Lx8 LINE L1 7100 7234 -239 6 912 1283 109 0 5 chr5 42962387 42962572 -109574687 - B2_Mm2 SINE B2 -10 185 2 6 912 970 264 67 72 chr5 42962572 42962818 -109574441 + Lx8 LINE L1 7235 7473 0 6 912 1621 76 27 5 chr5 42963779 42964003 -109573256 + L1_Mus1 LINE L1 6339 6567 0 6 912 256 259 45 45 chr5 42964147 42964236 -109573023 + PB1D10 SINE Alu 28 116 -1 6 912 1159 180 42 0 chr5 42965123 42965340 -109571919 - URR1A DNA MER1_type 0 226 1 6 912 262 167 79 53 chr5 42966187 42966263 -109570996 + RLTR25B LTR ERVK 432 509 -519 6 912 729 75 0 9 chr5 42966200 42966307 -109570952 + B1_Mm SINE Alu 42 147 0 6 912 198 0 0 0 chr5 42966307 42966329 -109570930 + (A)n Simple_repeat Simple_repeat 1 22 0 6 912 308 279 19 19 chr5 42967521 42967627 -109569632 + CT-rich Low_complexity Low_complexity 4 109 0 6 912 360 0 0 0 chr5 42967628 42967668 -109569591 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 912 353 328 78 17 chr5 42968408 42968588 -109568671 - MIR SINE MIR -7 255 65 6 912 22 0 0 0 chr5 42968957 42968979 -109568280 + AT_rich Low_complexity Low_complexity 1 22 0 6 912 3412 237 6 12 chr5 42970184 42970864 -109566395 + Lx5 LINE L1 6375 7050 0 6 912 1642 330 64 34 chr5 42971649 42972586 -109564673 - Lx8 LINE L1 -714 6759 5795 6 912 198 0 0 0 chr5 42972590 42972612 -109564647 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 6 912 33742 90 15 8 chr5 42972618 42979139 -109558120 - L1Md_F2 LINE L1 -19 6563 98 6 912 605 285 2 17 chr5 42979151 42979389 -109557870 - Lx8 LINE L1 -1931 5765 5502 6 912 4089 72 22 31 chr5 42979793 42980370 -109556889 - L1Md_F2 LINE L1 0 6582 6011 6 912 268 347 143 0 chr5 42982674 42982821 -109554438 - MLT1A1 LTR MaLR 0 408 241 6 912 663 253 65 74 chr5 42982842 42983028 -109554231 - ORR1D1 LTR MaLR 0 394 185 6 912 459 0 0 0 chr5 42983028 42983079 -109554180 + (GA)n Simple_repeat Simple_repeat 1 51 0 6 912 663 249 53 87 chr5 42983079 42983132 -109554127 - ORR1D1 LTR MaLR -190 184 132 6 912 453 327 9 3 chr5 42983108 42983243 -109554016 + MTE-int LTR MaLR 1016 1141 -368 6 912 1200 81 35 0 chr5 42983338 42983511 -109553748 - L1_Mus2 LINE L1 0 6566 6388 6 912 384 260 7 66 chr5 42983511 42983647 -109553612 - Tigger5 DNA MER2_type -122 2284 2157 6 912 659 301 24 6 chr5 42983661 42983825 -109553434 + B3A SINE B2 2 168 -30 6 912 315 0 0 0 chr5 42983827 42983862 -109553397 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 912 432 277 87 43 chr5 42984169 42984399 -109552860 - Lx8 LINE L1 0 7473 7234 6 912 215 238 18 13 chr5 42984459 42984525 -109552734 + L2b LINE L2 3320 3387 0 6 912 313 161 40 51 chr5 42984561 42984738 -109552521 + (TTATA)n Simple_repeat Simple_repeat 1 175 0 6 912 304 324 10 0 chr5 42985261 42985363 -109551896 - MIRb SINE MIR -75 193 91 6 912 304 350 61 22 chr5 42986045 42986276 -109550983 - Tigger13a DNA MER2_type -443 328 89 6 912 284 0 28 0 chr5 42986531 42986567 -109550692 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 6 912 347 255 53 0 chr5 42988008 42988102 -109549157 + MLT1A1 LTR MaLR 307 405 -3 6 912 205 218 69 52 chr5 42988409 42988467 -109548792 - MIRb SINE MIR -147 121 63 6 912 207 0 0 0 chr5 42988468 42988491 -109548768 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 6 912 243 0 0 0 chr5 42990615 42990642 -109546617 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 912 1599 236 104 3 chr5 42991135 42991509 -109545750 + MTD LTR MaLR 1 412 -7 6 912 336 200 114 0 chr5 42991506 42991576 -109545683 - ORR1D2 LTR MaLR -31 339 262 6 14 718 191 0 0 chr5 42991576 42991712 -109545547 + L1_Rod LINE L1 5692 5827 -20 6 913 4064 248 116 24 chr5 42991723 42993082 -109544177 + Lx9 LINE L1 6138 7622 -22 6 913 1039 308 13 46 chr5 42993082 42993385 -109543874 - ORR1D2 LTR MaLR -77 293 1 6 913 1340 121 0 0 chr5 42993737 42993919 -109543340 - Lx4A LINE L1 -114 6944 6763 6 913 10005 87 9 37 chr5 42994138 42994341 -109542918 - L1_Mur1 LINE L1 -605 5281 5103 6 913 2790 45 6 6 chr5 42994341 42994696 -109542563 - L1Md_F3 LINE L1 -3 6581 6227 6 913 10005 87 9 37 chr5 42994696 42995187 -109542072 - L1_Mur1 LINE L1 -784 5102 4636 6 913 387 0 0 0 chr5 42995187 42995230 -109542029 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 913 387 0 0 0 chr5 42995230 42995272 -109541987 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 913 10005 87 9 37 chr5 42995272 42996127 -109541132 - L1_Mur1 LINE L1 -1251 4635 3775 6 913 10117 101 2 2 chr5 42996124 42997857 -109539402 + Lx3_Mus LINE L1 5280 7009 0 6 913 674 231 20 20 chr5 42998768 42998914 -109538345 + B1_Mur1 SINE Alu 3 148 -1 6 913 226 366 32 8 chr5 43000517 43000641 -109536618 + MIRb SINE MIR 94 220 -48 1 913 435 339 52 41 chr5 43000872 43001066 -109536193 + B3A SINE B2 3 198 0 2 913 594 301 140 40 chr5 43001271 43001600 -109535659 - MTEa LTR MaLR -17 362 1 3 913 5455 36 1 3 chr5 43001689 43002349 -109534910 - L1Md_F3 LINE L1 0 6584 5926 4 913 3877 118 6 8 chr5 43002349 43003464 -109533795 - L1Md_A LINE L1 -4383 1503 425 5 913 792 231 83 47 chr5 43003486 43003740 -109533519 - Lx5 LINE L1 -2 7048 6786 6 913 483 18 0 0 chr5 43004188 43004244 -109533015 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 913 384 359 25 61 chr5 43004250 43004413 -109532846 - B3A SINE B2 -41 157 1 8 913 1482 308 71 17 chr5 43005380 43006358 -109530901 + Lx7 LINE L1 5248 6290 -1183 9 913 435 205 221 9 chr5 43006461 43006574 -109530685 - PB1 SINE Alu 0 149 13 1 913 287 382 41 7 chr5 43006588 43006733 -109530526 - MER5A1 DNA MER1_type -5 161 12 1 913 3499 48 2 0 chr5 43006775 43007394 -109529865 - L1_Mus2 LINE L1 -536 6030 5411 1 913 4063 63 4 37 chr5 43007394 43007940 -109529319 + L1_Mus2 LINE L1 6038 6565 -1 1 913 1098 104 6 0 chr5 43008186 43008368 -109528891 + Lx3_Mus LINE L1 6820 7002 -7 1 913 227 197 13 53 chr5 43008438 43008513 -109528746 + A-rich Low_complexity Low_complexity 2 73 0 1 913 387 0 0 0 chr5 43008610 43008653 -109528606 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 913 347 320 71 8 chr5 43008776 43008902 -109528357 + ID_B1 SINE B4 83 216 -8 1 913 39 22 0 0 chr5 43009673 43009719 -109527540 + AT_rich Low_complexity Low_complexity 1 46 0 1 913 846 166 249 0 chr5 43010119 43010300 -109526959 - URR1A DNA MER1_type 0 226 1 1 913 359 256 0 0 chr5 43011224 43011302 -109525957 - MLT1E2 LTR MaLR -2 625 548 1 913 298 389 70 42 chr5 43011372 43011758 -109525501 - MLT1E2 LTR MaLR -206 421 25 1 913 567 174 23 0 chr5 43012452 43012584 -109524675 - Lx9 LINE L1 -8 7636 7502 2 913 378 333 192 0 chr5 43013143 43013299 -109523960 + B3 SINE B2 1 186 -30 2 913 623 87 19 0 chr5 43013314 43013417 -109523842 + (TAGA)n Simple_repeat Simple_repeat 1 105 0 2 913 732 80 0 0 chr5 43013877 43013977 -109523282 + (TCCC)n Simple_repeat Simple_repeat 2 101 0 2 913 224 322 174 0 chr5 43014848 43014969 -109522290 - L2b LINE L2 -94 3281 3140 2 913 643 275 0 0 chr5 43014994 43015136 -109522123 + B1F2 SINE Alu 2 143 -6 2 913 1124 15 8 0 chr5 43015149 43015283 -109521976 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 2 913 463 303 62 47 chr5 43015776 43015895 -109521364 - L1MA9 LINE L1 -403 5909 5795 2 913 477 50 0 0 chr5 43015895 43015955 -109521304 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 913 1770 203 89 25 chr5 43015959 43016353 -109520906 + MTC LTR MaLR 1 419 -2 2 913 463 303 62 47 chr5 43016353 43016550 -109520709 - L1MA9 LINE L1 -518 5794 5586 2 913 453 62 0 0 chr5 43017731 43017796 -109519463 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 913 230 384 54 54 chr5 43018127 43018350 -109518909 - MER58A DNA MER1_type 0 224 2 3 913 724 285 167 22 chr5 43018702 43019014 -109518245 + ORR1E LTR MaLR 1 357 -2 3 913 952 202 47 0 chr5 43019340 43019533 -109517726 - URR1B DNA MER1_type -4 221 20 3 913 607 233 113 33 chr5 43019659 43019810 -109517449 + RSINE1 SINE B4 3 165 0 3 913 793 236 89 15 chr5 43020213 43020415 -109516844 - MTD LTR MaLR 0 419 203 3 913 546 155 0 0 chr5 43020462 43020559 -109516700 + (TGG)n Simple_repeat Simple_repeat 1 97 0 3 913 282 116 0 0 chr5 43020855 43020898 -109516361 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 3 913 399 326 30 43 chr5 43021396 43021640 -109515619 + MLT1A1 LTR MaLR 83 363 -45 3 913 5746 67 0 0 chr5 43021900 43022633 -109514626 + L1Md_T LINE L1 5850 6582 0 3 913 1767 82 26 0 chr5 43022991 43023261 -109513998 - L1_Mur1 LINE L1 -1698 4188 3912 4 913 8510 120 17 14 chr5 43023260 43024632 -109512627 + Lx3C LINE L1 5601 6976 0 4 913 21 36 0 0 chr5 43024632 43024660 -109512599 + AT_rich Low_complexity Low_complexity 1 28 0 4 913 1173 284 76 3 chr5 43025276 43025605 -109511654 + MTD LTR MaLR 14 366 -53 4 913 1286 181 34 4 chr5 43025998 43026264 -109510995 - L1_Mur2 LINE L1 -1157 4720 4447 4 913 946 233 69 16 chr5 43026318 43026624 -109510635 - Lx7 LINE L1 -4 7692 7371 4 913 211 214 42 28 chr5 43026632 43026704 -109510555 + A-rich Low_complexity Low_complexity 5 77 0 4 913 757 249 0 0 chr5 43026714 43026887 -109510372 - Lx7 LINE L1 -353 7343 7171 4 913 22 0 0 0 chr5 43028290 43028312 -109508947 + AT_rich Low_complexity Low_complexity 1 22 0 4 913 305 289 51 45 chr5 43028336 43028492 -109508767 - MamGypLTR2c LTR Gypsy -84 984 828 4 913 228 357 128 9 chr5 43028745 43028971 -109508288 + MLT1D LTR MaLR 119 371 -134 4 913 378 0 0 0 chr5 43029492 43029534 -109507725 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 913 1331 256 52 5 chr5 43030886 43031291 -109505968 - Lx9 LINE L1 -204 7440 7017 5 913 486 0 0 0 chr5 43031334 43031388 -109505871 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 913 753 338 50 14 chr5 43031733 43032015 -109505244 + B4A SINE B4 1 292 0 5 913 748 337 32 22 chr5 43032135 43032448 -109504811 - Lx8 LINE L1 -673 6800 6485 5 913 579 66 0 0 chr5 43032802 43032878 -109504381 + (GA)n Simple_repeat Simple_repeat 1 76 0 5 913 931 128 42 58 chr5 43033110 43033300 -109503959 + B2_Mm2 SINE B2 2 188 -7 5 913 579 149 0 0 chr5 43033564 43033671 -109503588 + (TA)n Simple_repeat Simple_repeat 1 107 0 5 913 246 128 0 0 chr5 43033990 43034029 -109503230 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 913 239 388 65 18 chr5 43034057 43034225 -109503034 + MER63A DNA AcHobo 27 202 -8 5 913 214 367 50 20 chr5 43035198 43035298 -109501961 + MIRb SINE MIR 124 226 -42 6 913 498 341 53 49 chr5 43035885 43036316 -109500943 + L2c LINE L2 2733 3160 -227 6 913 267 328 72 39 chr5 43036992 43037173 -109500086 - L2a LINE L2 -102 3324 3138 6 913 315 49 0 0 chr5 43038990 43039031 -109498228 + (TATG)n Simple_repeat Simple_repeat 4 44 0 6 913 552 253 0 0 chr5 43039067 43039233 -109498026 + (TA)n Simple_repeat Simple_repeat 2 167 0 6 913 219 186 0 0 chr5 43039350 43039393 -109497866 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 6 913 217 227 0 33 chr5 43039553 43039644 -109497615 + CT-rich Low_complexity Low_complexity 1 88 0 6 913 229 344 0 0 chr5 43039662 43039723 -109497536 - tRNA-Ala-GCA tRNA tRNA -14 61 1 6 913 382 277 39 10 chr5 43039740 43039842 -109497417 - B1F1 SINE Alu -5 144 40 6 913 628 316 36 27 chr5 43040760 43040981 -109496278 + RMER15 LTR ERVL 338 560 -15 6 913 261 310 118 39 chr5 43041579 43041757 -109495502 + RMER15 LTR ERVL 348 539 -36 7 913 1079 219 187 157 chr5 43041765 43042225 -109495034 + MT2A LTR ERVL 1 474 -59 7 913 242 56 0 27 chr5 43042226 43042263 -109494996 + (TA)n Simple_repeat Simple_repeat 2 37 0 7 913 201 74 0 0 chr5 43042270 43042297 -109494962 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 913 192 306 20 0 chr5 43042463 43042512 -109494747 - MIRc SINE MIR -117 151 102 7 913 675 307 47 29 chr5 43043202 43043488 -109493771 - B4A SINE B4 0 292 2 7 913 1476 162 26 58 chr5 43043586 43043933 -109493326 - Lx4B LINE L1 -662 6396 6061 7 913 1605 128 41 3 chr5 43043943 43044233 -109493026 + Lx4B LINE L1 5717 6017 -1041 7 913 2117 27 0 0 chr5 43044783 43045041 -109492218 + L1Md_F2 LINE L1 5329 5586 -297 7 913 8219 40 2 1 chr5 43045041 43046080 -109491179 + L1Md_F2 LINE L1 5587 6582 0 7 913 445 359 52 9 chr5 43046138 43046349 -109490910 - Tigger5 DNA MER2_type -2164 242 23 7 913 340 316 115 55 chr5 43047149 43047537 -109489722 + MLT2B1 LTR ERVL 28 491 -63 7 913 1078 264 123 33 chr5 43049129 43049462 -109487797 - ORR1D2 LTR MaLR -7 363 1 8 913 429 90 0 0 chr5 43049954 43050021 -109487238 + (TG)n Simple_repeat Simple_repeat 1 67 0 8 913 1136 81 0 13 chr5 43050172 43050314 -109486945 + B1_Mus1 SINE Alu 1 142 -6 8 913 207 0 0 0 chr5 43050314 43050337 -109486922 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 913 2484 177 46 29 chr5 43050984 43051502 -109485757 - RLTR11A2 LTR ERVK 0 527 1 8 913 631 299 59 99 chr5 43051799 43052223 -109485036 + MTD LTR MaLR 1 407 -12 8 913 477 289 136 105 chr5 43052285 43052741 -109484518 + MTC-int LTR MaLR 531 1104 -154 8 913 798 273 36 116 chr5 43052776 43053112 -109484147 + MTE2a LTR MaLR 7 315 -64 8 913 26814 29 1 5 chr5 43053112 43058290 -109478969 + L1Md_A LINE L1 451 5586 -297 8 913 8208 44 1 0 chr5 43058290 43059285 -109477974 + L1Md_A LINE L1 5587 6582 0 8 913 186 43 0 0 chr5 43059342 43059365 -109477894 + (A)n Simple_repeat Simple_repeat 1 23 0 8 913 201 74 0 0 chr5 43059788 43059815 -109477444 + (GA)n Simple_repeat Simple_repeat 2 28 0 9 913 1147 68 6 6 chr5 43059839 43060002 -109477257 + (GAA)n Simple_repeat Simple_repeat 3 165 0 9 913 268 305 0 0 chr5 43060160 43060219 -109477040 + ID4 SINE ID 21 79 -4 9 913 1521 84 0 18 chr5 43061607 43061825 -109475434 + L1Md_F2 LINE L1 6357 6570 -12 9 913 650 206 47 7 chr5 43062481 43062667 -109474592 + Lx4B LINE L1 6730 7009 -49 9 913 478 85 10 69 chr5 43062695 43062796 -109474463 + L1Md_F2 LINE L1 6487 6581 -1 9 913 21 57 0 0 chr5 43063494 43063529 -109473730 + AT_rich Low_complexity Low_complexity 1 35 0 9 913 539 273 114 44 chr5 43063546 43063818 -109473441 + B4A SINE B4 2 292 0 9 913 186 43 0 0 chr5 43063826 43063849 -109473410 + (CA)n Simple_repeat Simple_repeat 1 23 0 9 913 261 0 0 0 chr5 43063849 43063878 -109473381 + (GA)n Simple_repeat Simple_repeat 2 30 0 9 913 1089 198 47 0 chr5 43064111 43064323 -109472936 - URR1B DNA MER1_type -3 222 1 1 913 21 0 0 0 chr5 43064526 43064547 -109472712 + AT_rich Low_complexity Low_complexity 1 21 0 1 913 225 0 0 0 chr5 43064611 43064636 -109472623 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 913 680 270 242 8 chr5 43064650 43064963 -109472296 + MTD LTR MaLR 18 419 0 1 913 531 324 14 0 chr5 43066338 43066477 -109470782 + B3 SINE B2 74 214 -2 1 913 432 82 0 0 chr5 43066824 43066885 -109470374 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 913 396 313 87 58 chr5 43068984 43069191 -109468068 + MLT1A1 LTR MaLR 1 213 -195 1 913 249 57 0 0 chr5 43069298 43069333 -109467926 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 913 385 373 25 15 chr5 43069411 43069464 -109467795 - B3A SINE B2 0 198 149 1 913 429 20 0 0 chr5 43069464 43069514 -109467745 + (TATG)n Simple_repeat Simple_repeat 4 53 0 1 913 385 373 25 15 chr5 43069514 43069656 -109467603 - B3A SINE B2 -50 148 2 1 913 536 261 7 7 chr5 43070422 43070561 -109466698 + B1_Mur1 SINE Alu 1 139 -10 1 913 205 119 0 48 chr5 43071455 43071517 -109465742 + A-rich Low_complexity Low_complexity 3 61 0 1 913 396 0 0 0 chr5 43071647 43071691 -109465568 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 913 363 113 0 0 chr5 43073230 43073292 -109463967 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 913 1335 44 0 22 chr5 43073359 43073544 -109463715 - L1Md_F2 LINE L1 0 6582 6402 1 913 21 0 0 0 chr5 43073800 43073821 -109463438 + AT_rich Low_complexity Low_complexity 1 21 0 1 913 235 312 18 35 chr5 43074382 43074495 -109462764 + Lx8 LINE L1 7155 7265 -208 1 913 3880 190 20 144 chr5 43074559 43075480 -109461779 - RMER19B LTR ERVK 0 902 111 1 913 3015 97 7 2 chr5 43075480 43075912 -109461347 + L1_Mus3 LINE L1 6205 6638 0 1 913 3880 190 20 144 chr5 43075912 43076019 -109461240 - RMER19B LTR ERVK -792 110 1 1 913 3884 51 0 4 chr5 43076161 43076649 -109460610 + L1Md_F2 LINE L1 6093 6578 -4 1 913 782 314 35 4 chr5 43077717 43077976 -109459283 - RMER5 LTR ERV1 -31 503 237 1 913 343 240 106 16 chr5 43078002 43078125 -109459134 - RMER5 LTR ERV1 -368 166 33 1 913 6705 94 11 16 chr5 43079146 43080434 -109456825 - L1Md_F2 LINE L1 -2 6580 5303 1 913 10602 81 2 0 chr5 43080426 43082375 -109454884 - L1Md_F2 LINE L1 -282 6300 4348 1 913 1375 85 35 0 chr5 43082372 43082573 -109454686 - L1_Mm LINE L1 -904 4979 4772 1 913 639 83 0 0 chr5 43082574 43082670 -109454589 + L1_Mm LINE L1 4963 5058 -825 1 913 15446 86 2 3 chr5 43082664 43084904 -109452355 + L1Md_F2 LINE L1 3349 5586 -297 1 913 7452 78 2 6 chr5 43084904 43085904 -109451355 + L1Md_F2 LINE L1 5587 6582 0 1 913 314 235 44 0 chr5 43086517 43086585 -109450674 + ID4_ SINE ID 9 79 -4 1 913 2047 213 29 207 chr5 43087725 43087748 -109449511 - RMER19C LTR ERVK -18 593 578 1 913 216 0 0 0 chr5 43087748 43087772 -109449487 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 913 2047 213 29 207 chr5 43087772 43088469 -109448790 - RMER19C LTR ERVK -34 577 1 1 913 1786 266 27 41 chr5 43088816 43089593 -109447666 - Lx7 LINE L1 -551 5329 4564 1 913 1367 264 109 14 chr5 43089591 43090493 -109446766 + Lx7 LINE L1 5326 6303 -1393 1 913 3851 143 1 105 chr5 43090491 43090744 -109446515 + L1_Mus3 LINE L1 5156 5409 -474 1 913 7828 38 3 0 chr5 43090744 43091678 -109445581 + L1Md_A LINE L1 5644 6580 -2 1 913 6931 98 7 49 chr5 43091678 43093021 -109444238 + L1_Mus3 LINE L1 5410 6638 0 1 913 984 330 11 24 chr5 43093099 43093478 -109443781 + Lx7 LINE L1 6340 6713 -983 1 913 789 317 47 35 chr5 43093827 43094082 -109443177 + B4 SINE B4 15 272 -20 1 913 417 54 0 0 chr5 43094090 43094146 -109443113 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 913 194 156 0 22 chr5 43094233 43094279 -109442980 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 913 35949 26 5 7 chr5 43095097 43100905 -109436354 + L1Md_A LINE L1 1 5585 -298 1 913 8053 45 4 0 chr5 43100906 43101898 -109435361 + L1Md_A LINE L1 5587 6582 0 1 913 546 329 35 0 chr5 43104179 43104322 -109432937 + B3A SINE B2 4 151 -47 1 913 423 0 0 0 chr5 43104322 43104369 -109432890 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 913 560 93 10 0 chr5 43105077 43105174 -109432085 + (TG)n Simple_repeat Simple_repeat 1 98 0 1 913 498 33 0 0 chr5 43105516 43105576 -109431683 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1 913 219 246 0 0 chr5 43105585 43105642 -109431617 + C-rich Low_complexity Low_complexity 2 58 0 1 913 968 149 6 0 chr5 43105651 43105825 -109431434 + CT-rich Low_complexity Low_complexity 2 176 0 1 913 993 31 8 0 chr5 43107462 43107590 -109429669 + B1_Mus1 SINE Alu 18 146 -2 1 913 4766 117 5 18 chr5 43109112 43109852 -109427407 - Lx LINE L1 -7 6647 5917 1 913 318 296 25 8 chr5 43111611 43111802 -109425457 - Lx7 LINE L1 -1788 5908 5687 1 913 2461 182 80 45 chr5 43112472 43113076 -109424183 + Lx5 LINE L1 5690 6314 -736 1 913 1357 172 47 8 chr5 43113089 43113346 -109423913 + Lx5 LINE L1 6784 7050 0 1 913 1357 172 80 55 chr5 43113955 43114355 -109422904 - RMER17C LTR ERVK 0 410 1 1 913 219 353 60 64 chr5 43114957 43115175 -109422084 + B4A SINE B4 2 218 -74 1 913 27 29 0 0 chr5 43116831 43116865 -109420394 + AT_rich Low_complexity Low_complexity 1 34 0 1 913 315 0 0 0 chr5 43118813 43118848 -109418411 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 913 722 312 10 15 chr5 43119527 43119732 -109417527 - B3 SINE B2 -6 210 7 1 913 783 343 52 23 chr5 43119804 43120147 -109417112 + MLT1A0 LTR MaLR 1 353 -12 1 913 1055 128 27 0 chr5 43120318 43120505 -109416754 + L1_Mus3 LINE L1 6445 6636 -2 1 913 200 188 89 0 chr5 43121748 43121849 -109415410 + (TA)n Simple_repeat Simple_repeat 2 111 0 1 913 300 137 0 0 chr5 43121867 43121918 -109415341 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 913 832 236 23 187 chr5 43121926 43122145 -109415114 + B3 SINE B2 6 210 -6 1 114 6986 68 9 5 chr5 43122534 43123811 -109413448 - L1Md_F2 LINE L1 -12 6570 5288 1 914 35973 44 1 4 chr5 43123805 43130119 -109407140 - L1Md_T LINE L1 -3 6582 189 1 914 1212 95 0 11 chr5 43130558 43130739 -109406520 - L1_Mus1 LINE L1 -1 6566 6388 1 914 256 209 45 0 chr5 43132278 43132345 -109404914 + CT-rich Low_complexity Low_complexity 3 72 0 1 914 1119 95 0 0 chr5 43132791 43132938 -109404321 - B1_Mus1 SINE Alu -1 147 1 1 914 349 225 70 26 chr5 43133336 43133450 -109403809 - ORR1D1 LTR MaLR -61 313 195 1 914 204 122 0 0 chr5 43133758 43133799 -109403460 + (A)n Simple_repeat Simple_repeat 1 41 0 1 914 243 0 0 0 chr5 43133846 43133873 -109403386 + (A)n Simple_repeat Simple_repeat 1 27 0 1 914 1755 222 84 0 chr5 43134303 43134659 -109402600 + ORR1B1 LTR MaLR 1 386 -8 1 914 2234 238 27 25 chr5 43134669 43135281 -109401978 + ORR1B1-int LTR MaLR 3 560 -949 1 914 321 143 0 0 chr5 43135277 43135326 -109401933 + ORR1B1 LTR MaLR 328 376 -2 1 914 318 375 0 9 chr5 43135327 43135432 -109401827 + B4A SINE B4 104 207 -85 1 914 234 0 0 0 chr5 43135441 43135467 -109401792 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 914 17394 87 5 11 chr5 43136587 43139698 -109397561 + L1Md_F2 LINE L1 631 3720 -2163 1 914 39267 6 0 0 chr5 43139697 43146254 -109391005 - L1Md_A LINE L1 0 6582 25 1 914 12775 74 35 1 chr5 43146252 43148068 -109389191 + L1Md_F2 LINE L1 3708 5586 -297 1 914 7763 60 8 0 chr5 43148069 43149052 -109388207 + L1Md_F2 LINE L1 5588 6578 -4 1 914 204 125 0 0 chr5 43149453 43149485 -109387774 + (CAA)n Simple_repeat Simple_repeat 1 32 0 1 914 219 291 23 23 chr5 43151376 43151464 -109385795 + GA-rich Low_complexity Low_complexity 2 89 0 1 914 405 58 0 0 chr5 43151853 43151905 -109385354 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 914 345 343 92 140 chr5 43152000 43152068 -109385191 - B4A SINE B4 -14 278 213 1 914 717 73 0 0 chr5 43152068 43152164 -109385095 + (TTTC)n Simple_repeat Simple_repeat 3 98 0 1 914 943 138 7 46 chr5 43152165 43152317 -109384942 - B1_Mus1 SINE Alu -1 147 2 1 914 345 343 92 140 chr5 43152317 43152538 -109384721 - B4A SINE B4 -80 212 1 1 914 187 174 106 21 chr5 43152864 43152911 -109384348 - L3 LINE CR1 -1921 2568 2518 1 914 217 0 61 0 chr5 43153941 43153974 -109383285 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 914 351 303 54 47 chr5 43153987 43154136 -109383123 - MIRb SINE MIR -111 157 8 1 914 342 0 0 0 chr5 43154245 43154283 -109382976 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 914 184 330 38 19 chr5 43154739 43154844 -109382415 - MIR SINE MIR -52 210 104 1 914 411 285 54 104 chr5 43154855 43155137 -109382122 - MLT1E1 LTR MaLR -6 674 406 1 914 210 261 9 9 chr5 43155550 43155637 -109381622 + CT-rich Low_complexity Low_complexity 1 87 0 1 914 362 306 28 14 chr5 43155644 43155783 -109381476 - B1F SINE Alu -1 148 9 1 914 2716 12 0 0 chr5 43156701 43157023 -109380236 + L1Md_A LINE L1 5265 5586 -297 1 914 8741 18 0 0 chr5 43157024 43158018 -109379241 + L1Md_A LINE L1 5588 6581 -1 1 914 557 240 75 43 chr5 43158900 43158996 -109378263 - RLTR20C LTR ERVK 0 534 434 1 914 351 0 0 0 chr5 43158996 43159035 -109378224 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 914 784 211 330 72 chr5 43159035 43159333 -109377926 - RLTR20C LTR ERVK -101 433 60 1 914 333 0 0 0 chr5 43159404 43159441 -109377818 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 914 194 116 23 0 chr5 43159527 43159570 -109377689 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 1 914 1065 70 27 14 chr5 43159599 43159745 -109377514 - B1_Mus1 SINE Alu 0 148 1 1 914 269 158 35 0 chr5 43160411 43160468 -109376791 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1 914 231 231 19 0 chr5 43160485 43160537 -109376722 + (TATG)n Simple_repeat Simple_repeat 3 55 0 1 914 198 0 0 0 chr5 43161723 43161745 -109375514 + (TA)n Simple_repeat Simple_repeat 1 22 0 1 914 781 275 16 51 chr5 43162106 43162363 -109374896 - Lx8 LINE L1 -172 7301 7054 1 914 251 238 96 89 chr5 43162423 43162580 -109374679 + ORR1B1-int LTR MaLR 269 426 -1083 1 914 1416 322 49 35 chr5 43162580 43163315 -109373944 - Lx8 LINE L1 -627 6846 6102 1 914 375 60 0 0 chr5 43164486 43164536 -109372723 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 914 187 242 48 16 chr5 43165644 43165707 -109371552 + L2a LINE L2 3101 3165 -261 1 914 323 323 118 57 chr5 43166172 43166226 -109371033 + MT2A LTR ERVL 182 238 -295 1 914 468 0 0 0 chr5 43166226 43166278 -109370981 + (ATG)n Simple_repeat Simple_repeat 2 53 0 1 914 323 323 118 57 chr5 43166278 43166555 -109370704 + MT2A LTR ERVL 239 533 0 1 914 2885 171 56 23 chr5 43167087 43167663 -109369596 - Lx4B LINE L1 -4 7054 6460 1 914 185 283 0 0 chr5 43169542 43169588 -109367671 - MIR SINE MIR -63 145 100 1 914 187 133 0 43 chr5 43169898 43169945 -109367314 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 914 1263 174 27 0 chr5 43169987 43170206 -109367053 - URR1B DNA MER1_type 0 225 1 1 914 318 335 143 25 chr5 43170252 43170497 -109366762 - MLT2B5 LTR ERVL -196 405 132 1 914 245 389 33 46 chr5 43170453 43170604 -109366655 - MTEb LTR MaLR -230 149 1 2 914 434 360 64 27 chr5 43170605 43170902 -109366357 + Lx8 LINE L1 7010 7317 -156 2 914 212 274 16 0 chr5 43170902 43170964 -109366295 + (TATG)n Simple_repeat Simple_repeat 2 64 0 2 914 341 306 130 11 chr5 43172381 43172566 -109364693 - L1MC4a LINE L1 -1 7881 7675 2 914 268 312 37 12 chr5 43172807 43172969 -109364290 - Lx3B LINE L1 -2129 5866 5669 2 914 291 350 50 7 chr5 43174296 43174437 -109362822 + Lx8 LINE L1 7182 7328 -145 2 914 708 98 0 0 chr5 43175752 43175854 -109361405 + (TTCTC)n Simple_repeat Simple_repeat 4 105 0 2 914 819 312 38 21 chr5 43175915 43176255 -109361004 - Lx8 LINE L1 -300 7173 6828 2 914 1068 267 144 14 chr5 43176319 43176756 -109360503 - Lx8 LINE L1 -812 6661 6168 2 914 2274 96 15 15 chr5 43176756 43177093 -109360166 - Lx3_Mus LINE L1 0 7009 6673 2 914 1592 222 107 0 chr5 43178376 43178759 -109358500 + Lx5 LINE L1 6627 7050 0 2 914 509 288 112 6 chr5 43179214 43179392 -109357867 + B4A SINE B4 3 199 -93 2 914 300 77 15 30 chr5 43179394 43179461 -109357798 + (CAAA)n Simple_repeat Simple_repeat 1 66 0 2 914 297 259 160 47 chr5 43179551 43179701 -109357558 + MIR SINE MIR 96 262 0 2 914 314 130 27 36 chr5 43180410 43180522 -109356737 + (TA)n Simple_repeat Simple_repeat 1 111 0 2 914 1544 205 44 9 chr5 43181005 43181325 -109355934 - Lx5 LINE L1 0 7050 6720 2 914 216 167 56 0 chr5 43181353 43181407 -109355852 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 2 914 191 61 0 29 chr5 43181704 43181738 -109355521 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 2 914 1342 59 11 5 chr5 43181750 43181938 -109355321 - L1_Mus3 LINE L1 0 6638 6450 2 914 336 322 82 33 chr5 43182224 43182407 -109354852 - MER3 DNA MER1_type -6 203 12 2 914 2586 89 75 3 chr5 43182414 43182787 -109354472 - MTB LTR MaLR 0 400 1 2 914 1034 306 19 44 chr5 43183300 43183621 -109353638 + MTE2a LTR MaLR 65 377 -2 2 914 204 323 43 57 chr5 43183948 43184089 -109353170 - MIRc SINE MIR -40 228 90 2 914 468 51 0 0 chr5 43184124 43184183 -109353076 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 914 423 0 0 0 chr5 43184183 43184229 -109353030 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 914 1152 82 7 0 chr5 43184409 43184556 -109352703 + B1_Mus1 SINE Alu 1 148 0 2 914 556 274 42 0 chr5 43185444 43185634 -109351625 - Tigger7 DNA MER2_type -34 2457 2260 2 914 507 107 0 0 chr5 43185747 43185822 -109351437 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 914 183 204 0 0 chr5 43186699 43186743 -109350516 + (TATG)n Simple_repeat Simple_repeat 1 44 0 2 914 461 389 69 0 chr5 43188543 43188759 -109348500 + B4A SINE B4 1 231 -61 2 914 404 316 33 33 chr5 43188761 43188974 -109348285 + Lx7 LINE L1 6989 7201 -495 2 914 713 106 0 9 chr5 43189058 43189172 -109348087 + (GGGA)n Simple_repeat Simple_repeat 3 115 0 2 914 596 136 0 10 chr5 43189479 43189583 -109347676 - Lx LINE L1 -8 6646 6544 2 914 3512 47 0 5 chr5 43190159 43190587 -109346672 - L1Md_F2 LINE L1 -12 6570 6145 2 914 1273 176 92 0 chr5 43190686 43190959 -109346300 - Lx5 LINE L1 0 7050 6753 2 914 1146 319 30 3 chr5 43193052 43193391 -109343868 - MTE2b LTR MaLR -31 348 1 2 914 531 311 47 14 chr5 43193391 43193606 -109343653 - MTE2b-int LTR MaLR 0 1580 1359 2 914 32 57 0 0 chr5 43193606 43193659 -109343600 + AT_rich Low_complexity Low_complexity 1 53 0 2 914 984 54 8 0 chr5 43193659 43193789 -109343470 - L1_Mus4 LINE L1 -889 5747 5617 2 914 684 45 0 0 chr5 43194504 43194592 -109342667 + (TTTC)n Simple_repeat Simple_repeat 3 90 0 2 914 402 173 0 0 chr5 43194614 43194689 -109342570 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 914 253 266 16 0 chr5 43194732 43194796 -109342463 - MER46C DNA MER2_type -10 328 264 2 914 189 0 0 0 chr5 43195917 43195938 -109341321 + (A)n Simple_repeat Simple_repeat 1 21 0 2 914 1779 234 63 44 chr5 43196958 43197463 -109339796 + RLTR17 LTR ERVK 105 619 -73 2 914 239 191 0 21 chr5 43197452 43197500 -109339759 + RLTR31_Mur LTR ERVK 507 553 0 2 914 1275 304 79 29 chr5 43197841 43198501 -109338758 + RMER15-int LTR ERVL 947 1639 -3360 2 914 393 117 26 0 chr5 43198600 43198677 -109338582 - L1Md_F2 LINE L1 -2 6580 6502 2 914 4948 225 57 20 chr5 43198678 43199920 -109337339 + Lx7 LINE L1 5635 6922 -774 2 914 515 41 164 0 chr5 43199922 43199995 -109337264 - ORR1A3 LTR MaLR 0 326 242 2 914 578 58 0 11 chr5 43199995 43200083 -109337176 + L1_Mus3 LINE L1 6546 6632 -6 2 914 412 108 163 35 chr5 43200083 43200095 -109337164 - ORR1A3 LTR MaLR -87 280 271 2 914 1672 124 43 10 chr5 43202079 43202362 -109334897 - ORR1A2 LTR MaLR -23 347 1 2 914 1760 190 134 109 chr5 43202365 43203015 -109334244 + Lx7 LINE L1 6923 7588 -108 2 914 285 53 25 74 chr5 43203017 43203098 -109334161 + A-rich Low_complexity Low_complexity 3 79 0 2 914 317 214 30 30 chr5 43203106 43203207 -109334052 + Lx7 LINE L1 7596 7696 0 2 914 21 95 0 0 chr5 43203378 43203441 -109333818 + AT_rich Low_complexity Low_complexity 1 63 0 2 914 3887 106 10 11 chr5 43203642 43204260 -109332999 - Lx2 LINE L1 -716 6281 5665 2 914 193 343 50 28 chr5 43205684 43205825 -109331434 + MIR SINE MIR 16 159 -109 2 914 930 302 56 50 chr5 43205980 43206301 -109330958 + MTE2a LTR MaLR 57 379 0 2 914 361 267 17 0 chr5 43206501 43206617 -109330642 + (TA)n Simple_repeat Simple_repeat 1 118 0 2 914 309 294 141 20 chr5 43206700 43206832 -109330427 + B4A SINE B4 3 134 -90 2 914 28517 78 14 38 chr5 43207007 43212205 -109325054 - L1Md_F2 LINE L1 -1 6581 1501 2 914 38548 13 0 2 chr5 43212226 43219439 -109317820 - L1Md_A LINE L1 0 6582 1 2 914 4163 154 11 19 chr5 43219450 43220540 -109316719 - L1Md_F2 LINE L1 -4378 1505 446 2 914 976 153 113 47 chr5 43220546 43220758 -109316501 + URR1A DNA MER1_type 1 226 0 2 914 21 0 0 0 chr5 43220761 43220782 -109316477 + AT_rich Low_complexity Low_complexity 1 21 0 2 914 6872 57 42 3 chr5 43220871 43222150 -109315109 - L1Md_F2 LINE L1 -12 6570 5266 2 914 2310 71 15 21 chr5 43222150 43222479 -109314780 + IAPLTR2b LTR ERVK 1 327 0 2 914 52186 27 12 11 chr5 43222480 43228946 -109308313 + IAPEz-int LTR ERVK 9 6479 -2 2 914 2355 68 15 21 chr5 43228948 43229277 -109307982 + IAPLTR2b LTR ERVK 1 327 0 2 914 3196 27 0 48 chr5 43229277 43229710 -109307549 - L1Md_F2 LINE L1 -612 5271 4860 2 914 9374 51 1 19 chr5 43229702 43231565 -109305694 - L1Md_F2 LINE L1 -3420 2463 643 2 914 21 36 0 0 chr5 43232155 43232183 -109305076 + AT_rich Low_complexity Low_complexity 1 28 0 2 914 483 18 0 0 chr5 43232786 43232842 -109304417 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 2 914 235 118 0 0 chr5 43232855 43232889 -109304370 - B2_Mm2 SINE B2 -70 125 92 2 914 5953 72 5 0 chr5 43232911 43233691 -109303568 - L1_Mus3 LINE L1 -2 6636 5853 2 914 1958 66 0 0 chr5 43233691 43233950 -109303309 + L1_Mus3 LINE L1 5589 5847 -791 2 914 205 343 30 10 chr5 43234294 43234394 -109302865 - MIR SINE MIR -15 247 146 2 914 278 327 29 118 chr5 43234645 43234815 -109302444 + MTEb LTR MaLR 5 159 -220 2 914 562 322 19 13 chr5 43234995 43235120 -109302139 + RSINE1 SINE B4 3 129 -36 2 914 575 60 12 0 chr5 43235120 43235204 -109302055 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 914 562 322 19 13 chr5 43235204 43235232 -109302027 + RSINE1 SINE B4 130 157 -8 2 914 327 337 10 0 chr5 43236350 43236448 -109300811 - MTEb LTR MaLR -2 377 279 2 914 791 360 113 3 chr5 43236540 43236921 -109300338 - MTE-int LTR MaLR -242 1338 916 2 914 250 354 86 68 chr5 43236924 43237145 -109300114 + MTE-int LTR MaLR 492 716 -864 2 914 369 321 17 43 chr5 43237358 43237475 -109299784 + MTE-int LTR MaLR 318 431 -1149 2 914 348 361 132 0 chr5 43237539 43237744 -109299515 - MTE-int LTR MaLR -1348 232 1 2 914 3630 56 21 0 chr5 43237907 43238375 -109298884 - L1Md_F2 LINE L1 0 6582 6105 2 914 300 374 0 0 chr5 43238458 43238557 -109298702 - ORR1E LTR MaLR -251 108 10 2 914 3413 33 0 2 chr5 43238632 43239029 -109298230 + MTA_Mm LTR MaLR 1 396 0 2 914 9110 37 9 0 chr5 43239029 43240117 -109297142 + MTA_Mm-int LTR MaLR 1 1098 0 2 914 3403 35 0 0 chr5 43240117 43240513 -109296746 + MTA_Mm LTR MaLR 1 396 0 2 914 199 300 16 16 chr5 43240516 43240577 -109296682 + L2c LINE L2 3267 3327 -60 2 914 539 0 30 0 chr5 43240852 43240918 -109296341 + (TTTTG)n Simple_repeat Simple_repeat 5 72 0 2 914 2099 125 25 0 chr5 43241066 43241385 -109295874 + ORR1A2 LTR MaLR 1 327 0 2 914 198 284 149 34 chr5 43241651 43241826 -109295433 - MIR SINE MIR 0 262 68 2 914 1059 262 51 97 chr5 43242480 43242873 -109294386 - MTEb LTR MaLR -2 377 3 2 914 266 0 29 0 chr5 43243100 43243134 -109294125 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 2 914 273 353 114 34 chr5 43243135 43243399 -109293860 - MLT1H-int LTR MaLR -619 790 506 2 914 487 293 142 32 chr5 43243882 43244129 -109293130 - B4A SINE B4 -18 274 1 2 914 1313 269 92 13 chr5 43244510 43244988 -109292271 + Lx7 LINE L1 6597 7112 -584 2 914 1313 130 10 5 chr5 43245015 43245224 -109292035 + ORR1B1 LTR MaLR 183 392 -2 2 914 6662 186 102 127 chr5 43245226 43245672 -109291587 + ORR1B1-int LTR MaLR 1 523 -1440 2 914 2611 54 24 6 chr5 43245672 43246006 -109291253 + L1Md_F2 LINE L1 6227 6566 -16 2 914 6662 186 102 127 chr5 43246006 43246425 -109290834 + ORR1B1-int LTR MaLR 524 860 -1103 2 914 333 47 0 0 chr5 43246425 43246468 -109290791 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 914 6662 186 102 127 chr5 43246468 43247554 -109289705 + ORR1B1-int LTR MaLR 861 1904 -59 2 914 2240 158 0 54 chr5 43247581 43247989 -109289270 + ORR1B1 LTR MaLR 1 386 -8 2 914 207 88 0 29 chr5 43248104 43248139 -109289120 + (GGTTG)n Simple_repeat Simple_repeat 2 35 0 2 914 21 57 0 0 chr5 43248222 43248257 -109289002 + AT_rich Low_complexity Low_complexity 1 35 0 2 914 356 361 123 36 chr5 43248323 43248682 -109288577 - LTR16A LTR ERVL -31 420 31 2 914 324 170 0 0 chr5 43248708 43248761 -109288498 - ORR1B1 LTR MaLR -338 56 4 2 914 540 0 0 0 chr5 43249404 43249464 -109287795 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 914 225 0 0 0 chr5 43249464 43249488 -109287771 + (GA)n Simple_repeat Simple_repeat 1 25 0 2 914 255 328 0 0 chr5 43251381 43251445 -109285814 + B4 SINE B4 109 172 -120 2 914 384 293 38 109 chr5 43251421 43251632 -109285627 - RMER20B LTR ERVK -7 620 425 2 914 591 15 0 0 chr5 43251836 43251904 -109285355 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 2 914 222 37 0 0 chr5 43251923 43251950 -109285309 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 2 914 480 214 82 0 chr5 43251956 43252054 -109285205 - RMER20B LTR ERVK -215 412 307 2 914 5762 82 6 8 chr5 43252054 43252856 -109284403 - L1Md_F2 LINE L1 -1 6581 5781 2 914 2625 99 2 20 chr5 43252842 43253244 -109284015 - L1_Mus4 LINE L1 0 6636 6242 3 914 2886 82 0 0 chr5 43253247 43253639 -109283620 + L1_Mus4 LINE L1 5849 6240 -396 3 114 886 222 189 11 chr5 43253648 43253911 -109283348 - RMER20B LTR ERVK -317 310 1 2 915 338 353 59 0 chr5 43253911 43254030 -109283229 + B4A SINE B4 161 286 -6 2 915 1813 73 4 0 chr5 43255182 43255416 -109281843 - L1_Mus3 LINE L1 -1 6565 6331 3 915 2162 58 0 0 chr5 43255416 43255694 -109281565 + L1_Mus3 LINE L1 6062 6339 -227 3 915 3291 75 2 11 chr5 43258264 43258734 -109278525 - L1_Mus3 LINE L1 -520 6118 5653 3 915 3696 80 21 36 chr5 43258734 43259268 -109277991 + L1_Mus3 LINE L1 6107 6632 -6 3 915 180 0 0 0 chr5 43259307 43259327 -109277932 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 915 581 280 7 20 chr5 43259461 43259607 -109277652 + B1_Mur2 SINE Alu 5 148 -1 3 915 1098 300 49 38 chr5 43259858 43260225 -109277034 - MLT1B LTR MaLR -19 371 1 3 915 25 0 0 0 chr5 43261196 43261221 -109276038 + AT_rich Low_complexity Low_complexity 1 25 0 3 915 590 299 55 33 chr5 43261736 43261919 -109275340 + ID_B1 SINE B4 5 191 -33 3 915 237 163 0 20 chr5 43262972 43263022 -109274237 + T-rich Low_complexity Low_complexity 2 50 0 3 915 317 215 200 32 chr5 43263153 43263278 -109273981 + MER5A1 DNA MER1_type 1 146 -20 3 915 282 29 0 0 chr5 43263834 43263869 -109273390 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 3 915 231 61 0 0 chr5 43264284 43264317 -109272942 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 3 915 459 0 0 0 chr5 43264322 43264373 -109272886 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 915 894 73 0 0 chr5 43264481 43264604 -109272655 + (GGAAA)n Simple_repeat Simple_repeat 3 125 0 3 915 822 306 82 26 chr5 43265568 43265910 -109271349 + MLT2B4 LTR ERVL 10 370 -186 3 915 1564 216 10 19 chr5 43265916 43266228 -109271031 - MTD LTR MaLR -2 417 109 3 915 2725 133 0 0 chr5 43266231 43266675 -109270584 - L1_Mus3 LINE L1 -626 5257 4814 3 915 6901 99 16 8 chr5 43266651 43268017 -109269242 + L1_Mus3 LINE L1 5263 6637 -1 3 915 358 265 100 20 chr5 43268019 43268119 -109269140 - MTD LTR MaLR -299 120 13 3 915 1757 203 65 51 chr5 43268437 43268454 -109268805 - MTC LTR MaLR 0 421 411 3 915 2907 114 99 26 chr5 43268454 43268951 -109268308 - RMER16 LTR ERVK 0 533 1 3 915 1757 203 65 51 chr5 43268951 43269348 -109267911 - MTC LTR MaLR -11 410 1 3 915 1003 265 22 122 chr5 43269348 43269718 -109267541 + MTE2a LTR MaLR 50 379 0 3 915 25 31 0 0 chr5 43269762 43269794 -109267465 + AT_rich Low_complexity Low_complexity 1 32 0 3 915 39 38 0 0 chr5 43269848 43269901 -109267358 + AT_rich Low_complexity Low_complexity 1 53 0 3 915 184 353 59 22 chr5 43269902 43270038 -109267221 - L2a LINE L2 -184 3242 3102 3 915 192 302 81 11 chr5 43271259 43271346 -109265913 + MIR SINE MIR 29 121 -141 3 915 828 336 38 84 chr5 43271484 43271958 -109265301 + MLT1C LTR MaLR 1 452 -15 3 915 239 315 11 11 chr5 43272318 43272411 -109264848 - MIR SINE MIR -5 257 165 3 915 483 271 32 79 chr5 43272641 43272951 -109264308 + RMER13A LTR ERVK 565 852 -56 3 915 341 315 47 16 chr5 43273663 43273792 -109263467 + Lx8 LINE L1 6758 6890 -583 3 915 252 122 0 0 chr5 43275953 43275994 -109261265 + (GGA)n Simple_repeat Simple_repeat 3 43 0 3 915 372 316 0 42 chr5 43276089 43276208 -109261051 - RSINE1 SINE B4 -36 129 16 3 915 253 367 66 16 chr5 43276233 43276355 -109260904 - L2b LINE L2 -9 3366 3239 3 915 682 106 145 34 chr5 43276463 43276580 -109260679 + B2_Mm1t SINE B2 36 165 -28 3 915 1457 51 23 5 chr5 43276668 43276884 -109260375 - L1_Mus3 LINE L1 0 6638 6419 3 915 362 79 380 0 chr5 43276888 43276988 -109260271 + B2_Mm2 SINE B2 47 184 -11 3 915 273 272 17 29 chr5 43277912 43277972 -109259287 - RMER17D LTR ERVK -384 505 444 3 915 360 0 0 0 chr5 43277972 43278012 -109259247 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 915 273 272 17 29 chr5 43278012 43278125 -109259134 - RMER17D LTR ERVK -446 443 334 3 915 337 294 13 13 chr5 43278823 43278978 -109258281 - L1MB4 LINE L1 -214 5966 5812 3 915 406 309 73 15 chr5 43279573 43279833 -109257426 + L1MC LINE L1 2450 2724 -3422 3 915 342 310 91 23 chr5 43279846 43280021 -109257238 - B4 SINE B4 0 292 106 3 915 887 290 111 49 chr5 43280061 43280631 -109256628 + L1MC LINE L1 2746 3350 -2796 3 915 273 296 114 97 chr5 43280639 43280867 -109256392 + ORR1E LTR MaLR 1 232 -127 3 915 425 270 20 0 chr5 43280828 43280928 -109256331 - ID_B1 SINE B4 -14 210 109 3 915 435 338 25 44 chr5 43280952 43281156 -109256103 - ID_B1 SINE B4 -8 216 17 3 915 209 317 70 39 chr5 43282033 43282161 -109255098 + L2 LINE L2 2745 2876 -543 3 915 186 43 0 0 chr5 43282398 43282421 -109254838 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 3 915 190 309 93 23 chr5 43282613 43282699 -109254560 - MIR SINE MIR -63 145 54 3 915 447 285 62 31 chr5 43283943 43284200 -109253059 + L1MA8 LINE L1 6026 6290 -1 3 915 2274 292 77 25 chr5 43284465 43285460 -109251799 + Lx8 LINE L1 6398 7444 -29 3 915 21 0 0 0 chr5 43285473 43285494 -109251765 + AT_rich Low_complexity Low_complexity 1 21 0 3 915 221 0 0 33 chr5 43285810 43285840 -109251419 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 915 489 301 118 14 chr5 43286092 43286755 -109250504 - L1MA4 LINE L1 -398 5902 5129 3 915 2167 156 80 0 chr5 43286755 43287120 -109250139 - ORR1B1 LTR MaLR 0 394 1 3 915 489 294 78 11 chr5 43287120 43287163 -109250096 - L1MA4 LINE L1 -984 5156 5086 3 915 3937 65 2 14 chr5 43287886 43288399 -109248860 - L1Md_F2 LINE L1 -10 6572 6066 3 915 898 92 29 0 chr5 43288587 43288761 -109248498 + (GA)n Simple_repeat Simple_repeat 1 179 0 3 915 2312 169 35 10 chr5 43289377 43289783 -109247476 - MTC LTR MaLR -3 418 3 3 915 630 341 88 26 chr5 43290188 43290607 -109246652 + L1MDb LINE L1 776 1220 -5189 3 915 197 231 125 52 chr5 43290710 43290806 -109246453 + MIRb SINE MIR 116 218 -50 3 915 745 288 103 29 chr5 43291184 43291638 -109245621 + L1MA4 LINE L1 5454 5941 -359 3 915 387 0 0 0 chr5 43292403 43292446 -109244813 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 915 394 295 136 23 chr5 43292460 43292592 -109244667 - B3 SINE B2 -67 149 3 3 915 196 308 0 25 chr5 43294212 43294292 -109242967 - L2 LINE L2 -919 2500 2423 3 915 215 353 43 29 chr5 43295557 43295697 -109241562 - MIRc SINE MIR -124 144 3 3 915 224 397 13 3 chr5 43296316 43296483 -109240776 + MIRb SINE MIR 72 247 -21 3 915 719 239 72 28 chr5 43296510 43296691 -109240568 - B3A SINE B2 -6 192 4 3 915 285 324 32 29 chr5 43296691 43296806 -109240453 - MLT1D LTR MaLR -386 119 6 3 915 396 0 0 0 chr5 43296806 43296850 -109240409 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 915 212 140 39 39 chr5 43296881 43296933 -109240326 + A-rich Low_complexity Low_complexity 1 52 0 3 915 229 210 21 21 chr5 43298301 43298446 -109238813 + GA-rich Low_complexity Low_complexity 1 145 0 3 915 333 304 168 46 chr5 43299765 43300093 -109237166 - L2 LINE L2 -444 2975 2608 3 915 495 341 106 81 chr5 43300240 43300524 -109236735 + B4A SINE B4 2 292 0 3 915 372 22 0 0 chr5 43300543 43300588 -109236671 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 915 731 265 29 0 chr5 43300639 43300843 -109236416 + B3 SINE B2 1 210 -6 3 915 1079 89 7 0 chr5 43300861 43301007 -109236252 + B1_Mus1 SINE Alu 2 148 0 3 915 802 153 11 22 chr5 43301016 43301196 -109236063 + GA-rich Low_complexity Low_complexity 3 180 0 3 915 1052 38 8 0 chr5 43301197 43301330 -109235929 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 3 915 1746 290 43 21 chr5 43301420 43302120 -109235139 + Lx5 LINE L1 6455 7001 -49 3 915 383 98 16 0 chr5 43302140 43302201 -109235058 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 3 915 1530 162 86 0 chr5 43302250 43302528 -109234731 - ORR1B1 LTR MaLR -89 305 4 3 915 257 0 30 0 chr5 43302949 43302982 -109234277 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 915 2339 70 3 22 chr5 43302983 43303303 -109233956 - MTA_Mm LTR MaLR -55 341 28 3 915 6678 21 0 0 chr5 43303607 43304371 -109232888 - L1Md_A LINE L1 0 6582 5819 3 915 14624 13 0 0 chr5 43304371 43306122 -109231137 + L1_Mm LINE L1 3833 5583 -300 3 915 246 62 0 0 chr5 43307854 43307886 -109229373 + (CAA)n Simple_repeat Simple_repeat 1 32 0 3 915 274 321 152 35 chr5 43307974 43308145 -109229114 - LTR50 LTR ERVL -592 203 13 3 915 1192 72 35 35 chr5 43308516 43308716 -109228543 + L1Md_F2 LINE L1 6383 6582 0 3 915 609 287 169 62 chr5 43308989 43309309 -109227950 + ORR1E LTR MaLR 1 354 -5 3 915 366 333 24 36 chr5 43310651 43310816 -109226443 - MIRb SINE MIR -84 184 22 3 915 270 294 76 29 chr5 43311947 43312052 -109225207 + MLT1E1A LTR MaLR 3 112 -448 3 915 667 300 125 45 chr5 43312124 43312501 -109224758 + MLT1E1A LTR MaLR 274 680 0 3 915 327 363 141 10 chr5 43314325 43314531 -109222728 + MIR SINE MIR 22 254 -8 3 915 497 279 102 35 chr5 43314688 43314942 -109222317 - MTEa LTR MaLR 0 379 15 3 915 243 88 0 0 chr5 43317321 43317355 -109219904 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 915 423 294 87 36 chr5 43317373 43317592 -109219667 + MER121 Unknown Unknown 88 317 -95 3 915 231 269 113 19 chr5 43317934 43318093 -109219166 - Charlie5 DNA MER1_type -50 2574 2401 3 915 225 345 35 52 chr5 43318249 43318365 -109218894 + MLT1A1 LTR MaLR 19 132 -242 3 915 283 262 23 23 chr5 43318560 43318646 -109218613 + MLT1A1 LTR MaLR 318 403 -5 3 915 2345 161 39 10 chr5 43318848 43319257 -109218002 + MTC LTR MaLR 1 421 0 3 915 734 184 30 6 chr5 43320582 43320751 -109216508 - RCHARR1 DNA MER1_type -143 831 659 3 915 1224 101 0 0 chr5 43320760 43320938 -109216321 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 3 915 1693 289 44 50 chr5 43321718 43322946 -109214313 + L1_Mur3 LINE L1 2467 3687 -2193 3 915 525 214 0 19 chr5 43322951 43323056 -109214203 - MTC LTR MaLR -4 417 315 3 915 245 276 58 132 chr5 43322976 43323097 -109214162 - MamGypLTR1d LTR Gypsy -633 180 69 3 915 203 312 16 0 chr5 43323423 43323487 -109213772 + GA-rich Low_complexity Low_complexity 3 67 0 3 915 1981 63 22 15 chr5 43324447 43324721 -109212538 - L1_Mus1 LINE L1 -294 6273 5998 3 915 7152 6 0 0 chr5 43324738 43325529 -109211730 - L1Md_A LINE L1 0 6582 5792 4 915 3309 3 0 0 chr5 43325529 43325910 -109211349 + L1Md_A LINE L1 5417 5797 -86 4 915 1509 72 0 0 chr5 43325907 43326116 -109211143 - L1_Mus1 LINE L1 -555 6012 5804 3 915 1886 87 0 15 chr5 43326114 43326382 -109210877 + L1_Mus1 LINE L1 5522 5785 -98 3 915 1397 60 5 0 chr5 43326382 43326566 -109210693 + L1_Mus1 LINE L1 6383 6567 0 4 915 622 256 135 40 chr5 43327464 43327790 -109209469 + ORR1E LTR MaLR 1 357 -2 4 915 1403 44 0 27 chr5 43328173 43328359 -109208900 - L1_Mus1 LINE L1 0 6567 6387 4 915 1625 95 0 0 chr5 43328359 43328591 -109208668 + L1_Mus1 LINE L1 5854 6085 -482 4 915 544 357 0 0 chr5 43328947 43329087 -109208172 - RSINE1 SINE B4 -24 141 2 4 915 228 351 105 16 chr5 43330276 43330467 -109206792 + Lx7 LINE L1 6946 7153 -543 4 915 374 190 9 0 chr5 43330596 43330712 -109206547 + GA-rich Low_complexity Low_complexity 1 117 0 4 915 478 331 21 0 chr5 43330712 43330857 -109206402 + Lx8 LINE L1 7177 7324 -149 4 915 313 367 0 0 chr5 43330919 43330998 -109206261 + ORR1D2 LTR MaLR 117 195 -175 4 915 486 309 81 15 chr5 43331008 43331205 -109206054 - B3 SINE B2 -6 210 1 4 915 216 97 0 0 chr5 43331345 43331376 -109205883 + (TACTG)n Simple_repeat Simple_repeat 4 34 0 4 915 309 51 0 0 chr5 43331566 43331605 -109205654 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 915 414 0 0 0 chr5 43331605 43331650 -109205609 + (GA)n Simple_repeat Simple_repeat 2 47 0 4 915 31765 68 1 4 chr5 43331969 43337203 -109200056 + L1Md_A LINE L1 271 5589 -297 4 915 8753 19 0 0 chr5 43337204 43338199 -109199060 + L1Md_A LINE L1 5591 6585 0 4 915 340 170 11 43 chr5 43338205 43338297 -109198962 + Lx2 LINE L1 6909 6997 0 4 915 325 301 143 5 chr5 43338446 43338656 -109198603 + L1M5 LINE L1 4824 5062 -1084 4 915 22 35 0 0 chr5 43339097 43339126 -109198133 + AT_rich Low_complexity Low_complexity 1 29 0 4 915 896 155 12 0 chr5 43339388 43339556 -109197703 + Lx9 LINE L1 7311 7480 -164 4 915 460 230 81 7 chr5 43339615 43339764 -109197495 + Lx9 LINE L1 7484 7643 -1 4 915 7705 41 5 8 chr5 43340380 43341698 -109195561 - L1Md_F3 LINE L1 0 6584 5271 4 915 1714 292 69 18 chr5 43341754 43342042 -109195217 + Lx8 LINE L1 6646 6944 -529 4 915 225 0 0 0 chr5 43342042 43342067 -109195192 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 915 1714 292 69 18 chr5 43342067 43342562 -109194697 + Lx8 LINE L1 6945 7468 -5 4 915 29617 92 18 5 chr5 43342578 43347831 -109189428 + L1Md_F LINE L1 262 5586 -297 4 915 7890 56 3 0 chr5 43347831 43348821 -109188438 + L1Md_F2 LINE L1 5587 6579 -3 4 915 29617 80 16 1 chr5 43348821 43348838 -109188421 + L1Md_F LINE L1 5587 5605 -278 4 915 2280 47 0 23 chr5 43348871 43349179 -109188080 + L1Md_F2 LINE L1 5286 5586 -297 4 915 7249 62 32 9 chr5 43349180 43350153 -109187106 + L1Md_F2 LINE L1 5588 6582 0 4 915 207 264 264 0 chr5 43350442 43350529 -109186730 + MIR SINE MIR 21 130 -78 4 915 32 0 0 0 chr5 43351241 43351273 -109185986 + AT_rich Low_complexity Low_complexity 1 32 0 4 915 265 266 57 34 chr5 43352549 43352647 -109184612 - B4A SINE B4 -191 101 2 4 915 359 301 96 33 chr5 43353975 43354392 -109182867 + L1MCa LINE L1 2121 2283 -4225 4 915 311 233 21 53 chr5 43356872 43356967 -109180292 + L1MC4 LINE L1 7258 7349 -693 4 915 2315 158 90 53 chr5 43357002 43357491 -109179768 - RMER15 LTR ERVL -57 518 12 4 915 327 309 91 0 chr5 43357651 43357761 -109179498 - B4A SINE B4 -172 120 1 4 915 660 26 0 0 chr5 43358633 43358711 -109178548 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 4 915 186 133 0 0 chr5 43358989 43359019 -109178240 + (T)n Simple_repeat Simple_repeat 1 30 0 4 915 2369 60 0 25 chr5 43359021 43359346 -109177913 - L1Md_F2 LINE L1 0 6582 6266 4 915 590 249 43 58 chr5 43360027 43360215 -109177044 + MLT1A0 LTR MaLR 17 201 -164 4 915 495 0 0 0 chr5 43360332 43360387 -109176872 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 915 1394 203 88 9 chr5 43360502 43360845 -109176414 + ORR1D2 LTR MaLR 1 370 0 4 915 2222 212 58 6 chr5 43362435 43362956 -109174303 + Lx7 LINE L1 6820 7367 -329 4 915 31 0 0 0 chr5 43362965 43362996 -109174263 + AT_rich Low_complexity Low_complexity 1 31 0 4 915 183 42 0 0 chr5 43363078 43363102 -109174157 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 4 915 821 222 78 48 chr5 43363102 43363372 -109173887 + Lx7 LINE L1 7412 7689 -7 4 915 231 36 0 0 chr5 43363397 43363425 -109173834 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 915 592 261 65 83 chr5 43363436 43363653 -109173606 + B3 SINE B2 1 213 -3 4 915 208 424 20 0 chr5 43363699 43363798 -109173461 + MIR SINE MIR 19 119 -89 4 915 521 345 70 65 chr5 43363999 43364371 -109172888 - MLT1A1 LTR MaLR -14 394 21 4 915 617 338 58 20 chr5 43365296 43365695 -109171564 + Lx8 LINE L1 6685 7098 -375 4 915 324 0 0 0 chr5 43366770 43366806 -109170453 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 915 537 282 110 3 chr5 43366822 43367114 -109170145 - L1ME1 LINE L1 -304 5875 5553 4 915 201 368 193 0 chr5 43367866 43368037 -109169222 - L2 LINE L2 -765 2654 2451 4 915 215 297 182 0 chr5 43368123 43368271 -109168988 + L2 LINE L2 894 1068 -2351 4 915 243 263 51 26 chr5 43368334 43368412 -109168847 - MTE2a LTR MaLR -18 361 282 4 915 218 382 28 42 chr5 43368868 43369010 -109168249 + L2 LINE L2 1309 1448 -1971 4 915 756 231 0 0 chr5 43369185 43369328 -109167931 - B1_Mur3 SINE Alu -1 148 6 4 915 392 282 48 0 chr5 43369576 43369679 -109167580 - MLT1A1 LTR MaLR -279 129 22 4 915 327 283 42 42 chr5 43370154 43370272 -109166987 - PB1D9 SINE Alu -2 118 1 4 915 184 224 20 0 chr5 43370478 43370527 -109166732 + L2 LINE L2 2420 2469 -950 4 915 516 316 93 52 chr5 43370604 43370914 -109166345 - MLT1B LTR MaLR -52 338 16 4 915 529 227 31 151 chr5 43371183 43371232 -109166027 + MTEa LTR MaLR 206 251 -128 4 915 3311 38 2 12 chr5 43371232 43371632 -109165627 + MTA_Mm LTR MaLR 1 396 0 4 915 529 227 31 151 chr5 43371632 43371774 -109165485 + MTEa LTR MaLR 252 374 -5 4 915 573 311 141 8 chr5 43371816 43372072 -109165187 - MLT1C LTR MaLR -173 294 5 4 915 566 306 54 18 chr5 43373901 43374181 -109163078 + L1M5 LINE L1 5352 5641 -483 4 915 1013 193 38 10 chr5 43374286 43374495 -109162764 + B3 SINE B2 2 216 0 4 915 303 346 43 77 chr5 43374946 43375181 -109162078 - B4 SINE B4 -63 229 3 4 915 419 308 90 46 chr5 43375345 43375624 -109161635 + MLT2B1 LTR ERVL 107 489 -78 4 915 669 305 21 30 chr5 43375649 43375856 -109161403 - B3A SINE B2 -2 214 7 4 915 21 0 0 0 chr5 43375868 43375889 -109161370 + AT_rich Low_complexity Low_complexity 1 21 0 4 915 582 280 14 0 chr5 43375982 43376125 -109161134 + ID_B1 SINE B4 79 223 -1 4 915 209 289 24 0 chr5 43376126 43376209 -109161050 + GA-rich Low_complexity Low_complexity 1 85 0 4 915 901 274 50 84 chr5 43376475 43376834 -109160425 + MTEa LTR MaLR 4 350 -29 4 915 433 275 9 9 chr5 43377667 43377777 -109159482 + MIRb SINE MIR 83 192 -76 4 915 183 100 0 0 chr5 43377912 43377942 -109159317 + (TTG)n Simple_repeat Simple_repeat 2 31 0 4 915 292 343 88 0 chr5 43377942 43378044 -109159215 - PB1D7 SINE Alu -9 111 1 4 915 637 268 38 13 chr5 43378219 43378378 -109158881 + RSINE1 SINE B4 3 165 0 4 915 380 331 20 46 chr5 43378435 43378631 -109158628 + B3A SINE B2 2 192 -6 4 915 459 260 152 33 chr5 43378654 43379012 -109158247 - MLT1B LTR MaLR -56 411 2 4 915 474 18 0 0 chr5 43379760 43379815 -109157444 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 915 210 71 0 0 chr5 43379816 43379844 -109157415 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 915 531 293 81 48 chr5 43379889 43380111 -109157148 - L1MA5A LINE L1 -24 6273 6036 4 915 3137 64 8 2 chr5 43380111 43380505 -109156754 + MTA_Mm LTR MaLR 1 396 0 4 915 531 293 81 48 chr5 43380505 43380676 -109156583 - L1MA5A LINE L1 -262 6035 5867 4 915 892 200 219 16 chr5 43380965 43381300 -109155959 - MTD LTR MaLR 0 419 6 4 915 407 204 49 6 chr5 43381304 43381460 -109155799 - L1MA5A LINE L1 -871 5426 5263 4 915 1179 254 131 16 chr5 43381468 43382077 -109155182 + L1MA5 LINE L1 5601 6279 -21 4 915 442 294 100 0 chr5 43382832 43383063 -109154196 + L1MA6 LINE L1 5698 5951 -349 4 915 239 344 130 11 chr5 43384136 43384321 -109152938 - MIR SINE MIR -38 224 18 4 915 201 136 0 43 chr5 43384479 43384525 -109152734 + T-rich Low_complexity Low_complexity 4 47 0 4 916 259 42 41 41 chr5 43385025 43385074 -109152185 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 916 207 139 0 0 chr5 43385476 43385512 -109151747 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 916 866 184 110 31 chr5 43385586 43385777 -109151482 - B3 SINE B2 -8 208 3 4 916 738 0 0 0 chr5 43385945 43386027 -109151232 + (GAA)n Simple_repeat Simple_repeat 3 84 0 4 916 32246 13 0 2 chr5 43387180 43391512 -109145747 - L1Md_A LINE L1 0 6582 2258 4 916 41727 10 2 6 chr5 43391519 43397922 -109139337 - L1Md_A LINE L1 0 6582 205 4 916 227 355 70 62 chr5 43397985 43398228 -109139031 + MIRb SINE MIR 16 260 -8 4 916 285 335 158 18 chr5 43398475 43398761 -109138498 - MLT1H LTR MaLR -181 368 43 4 916 214 242 14 57 chr5 43398840 43398910 -109138349 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 4 916 1134 90 7 7 chr5 43399012 43399158 -109138101 - B1_Mus2 SINE Alu -1 146 1 4 916 2321 280 67 71 chr5 43399168 43399969 -109137290 - Lx8 LINE L1 -133 7340 6543 4 916 1385 62 66 20 chr5 43399952 43400149 -109137110 - L1Md_F2 LINE L1 -444 6138 5933 4 916 4206 39 6 26 chr5 43400149 43400618 -109136641 + L1Md_F2 LINE L1 6091 6562 -20 4 916 513 0 0 0 chr5 43400618 43400675 -109136584 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 916 4206 39 6 26 chr5 43400675 43400707 -109136552 + L1Md_F2 LINE L1 6563 6582 0 4 916 923 274 40 43 chr5 43400728 43401029 -109136230 - Lx8 LINE L1 -948 6525 6226 4 916 36737 35 3 11 chr5 43401321 43406490 -109130769 + L1Md_T LINE L1 463 5586 -297 4 916 8983 33 0 0 chr5 43406491 43407484 -109129775 + L1Md_T LINE L1 5588 6580 -2 4 916 545 329 55 59 chr5 43407949 43408204 -109129055 + B4A SINE B4 25 278 -14 4 916 266 354 0 0 chr5 43409003 43409082 -109128177 - MLT1J LTR MaLR -203 309 231 4 916 980 130 12 0 chr5 43409221 43409390 -109127869 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 4 916 9127 97 17 38 chr5 43409412 43411527 -109125732 - L1_Mus1 LINE L1 -4 6563 4453 4 916 236 250 18 0 chr5 43411537 43411593 -109125666 - MLT1H LTR MaLR -454 58 2 4 916 587 14 0 14 chr5 43413266 43413339 -109123920 + (TTC)n Simple_repeat Simple_repeat 3 74 0 5 916 420 20 0 0 chr5 43413339 43413388 -109123871 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 916 424 311 70 9 chr5 43413898 43414112 -109123147 - MER121 Unknown Unknown -123 289 63 5 916 274 293 0 12 chr5 43414296 43414379 -109122880 + (TGGA)n Simple_repeat Simple_repeat 4 85 0 5 916 186 43 0 0 chr5 43414536 43414559 -109122700 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 916 246 333 10 39 chr5 43414632 43414735 -109122524 + MIRc SINE MIR 84 183 -85 5 916 189 0 0 0 chr5 43415209 43415230 -109122029 + (A)n Simple_repeat Simple_repeat 1 21 0 5 916 270 315 0 44 chr5 43416235 43416348 -109120911 + GA-rich Low_complexity Low_complexity 1 108 0 5 916 397 0 0 36 chr5 43416768 43416823 -109120436 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 916 294 226 28 38 chr5 43416839 43416945 -109120314 + (TG)n Simple_repeat Simple_repeat 2 106 0 5 916 327 207 21 21 chr5 43416959 43417102 -109120157 + (TG)n Simple_repeat Simple_repeat 2 144 0 5 916 896 295 46 114 chr5 43417743 43418137 -109119122 - MTE2a LTR MaLR -12 367 1 5 916 1160 279 103 42 chr5 43418410 43419023 -109118236 + L1MB1 LINE L1 5494 6143 -25 5 916 2482 300 115 48 chr5 43419068 43419206 -109118053 + Lx8 LINE L1 6020 6165 -1308 5 916 369 0 0 0 chr5 43419206 43419247 -109118012 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 916 2482 300 115 48 chr5 43419247 43419865 -109117394 + Lx8 LINE L1 6166 6858 -615 5 916 261 0 0 0 chr5 43419865 43419894 -109117365 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 5 916 2482 300 115 48 chr5 43419894 43420496 -109116763 + Lx8 LINE L1 6859 7470 -3 5 916 230 280 27 0 chr5 43424030 43424105 -109113154 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 5 916 224 308 35 103 chr5 43424931 43425047 -109112212 - MIRb SINE MIR -40 228 121 5 916 600 318 69 5 chr5 43425075 43425277 -109111982 + B3 SINE B2 2 216 0 5 916 405 160 30 10 chr5 43425436 43425537 -109111722 + GA-rich Low_complexity Low_complexity 3 105 0 5 916 436 358 96 57 chr5 43425973 43426391 -109110868 + LTR16A LTR ERVL 1 434 -17 5 916 209 210 16 0 chr5 43426416 43426478 -109110781 + GA-rich Low_complexity Low_complexity 3 65 0 5 916 318 340 83 19 chr5 43428085 43428301 -109108958 - MIR SINE MIR -32 230 1 5 916 342 0 0 0 chr5 43428329 43428367 -109108892 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 916 21 0 0 0 chr5 43428735 43428756 -109108503 + AT_rich Low_complexity Low_complexity 1 21 0 5 916 632 280 47 137 chr5 43428830 43429173 -109108086 - ORR1E LTR MaLR -41 318 7 5 916 236 322 0 72 chr5 43429465 43429562 -109107697 - L2a LINE L2 -26 3400 3311 5 916 596 311 55 100 chr5 43430810 43431139 -109106120 - MLT1A LTR MaLR -4 370 57 5 916 2581 164 17 26 chr5 43431233 43431696 -109105563 - Lx5 LINE L1 -236 6814 6356 5 916 1201 179 70 4 chr5 43431683 43431913 -109105346 + Lx5 LINE L1 6806 7050 0 5 916 447 293 223 52 chr5 43432113 43432424 -109104835 - MLT1D LTR MaLR -27 478 124 5 916 2723 169 182 11 chr5 43432424 43432946 -109104313 - RMER19C LTR ERVK 0 611 1 5 916 447 293 223 52 chr5 43432946 43433037 -109104222 - MLT1D LTR MaLR -382 123 7 5 916 35 54 0 0 chr5 43433254 43433310 -109103949 + AT_rich Low_complexity Low_complexity 1 56 0 5 916 1130 51 49 28 chr5 43433427 43433559 -109103700 + B1_Mus1 SINE Alu 1 138 -10 5 916 314 23 23 0 chr5 43433559 43433602 -109103657 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5 916 311 341 45 0 chr5 43433705 43433793 -109103466 - RSINE1 SINE B4 -38 127 36 5 916 325 309 61 6 chr5 43434110 43434273 -109102986 + MIRb SINE MIR 74 245 -23 5 916 336 309 44 64 chr5 43434351 43434555 -109102704 - MIR SINE MIR -26 236 37 5 916 221 57 29 0 chr5 43434592 43434627 -109102632 + (CAA)n Simple_repeat Simple_repeat 2 37 0 5 916 620 323 15 15 chr5 43435196 43435397 -109101862 - MLT1A0 LTR MaLR -164 201 1 5 916 349 320 102 32 chr5 43436032 43436212 -109101047 + MLT1C LTR MaLR 262 433 -34 5 916 411 21 0 0 chr5 43436212 43436260 -109100999 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 916 349 310 113 25 chr5 43436260 43436280 -109100979 + MLT1C LTR MaLR 434 459 -8 5 916 209 297 16 0 chr5 43436481 43436545 -109100714 + MIRb SINE MIR 192 256 -12 5 916 448 355 75 5 chr5 43437030 43437217 -109100042 + MER58A DNA MER1_type 1 200 -24 5 916 227 256 93 62 chr5 43437253 43437382 -109099877 + LTR16E1 LTR ERVL 403 535 -3 5 916 566 182 83 69 chr5 43438332 43438506 -109098753 + B3 SINE B2 18 189 -6 5 916 829 159 0 58 chr5 43438531 43438685 -109098574 + B1_Mus2 SINE Alu 3 147 0 5 916 198 0 0 0 chr5 43440000 43440022 -109097237 + (A)n Simple_repeat Simple_repeat 1 22 0 5 916 262 251 27 29 chr5 43440885 43440989 -109096270 + MIR SINE MIR 108 217 -51 5 916 492 32 0 0 chr5 43441921 43441983 -109095276 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 916 402 57 0 0 chr5 43441983 43442036 -109095223 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 916 279 160 0 0 chr5 43442125 43442200 -109095059 + T-rich Low_complexity Low_complexity 1 75 0 5 916 257 295 102 28 chr5 43443240 43443348 -109093911 + PB1D10 SINE Alu 2 117 0 5 916 230 286 99 0 chr5 43444144 43444235 -109093024 + MIRb SINE MIR 15 114 -154 5 916 843 39 0 0 chr5 43444644 43444747 -109092512 + (TTTTC)n Simple_repeat Simple_repeat 2 104 0 5 916 3757 74 0 0 chr5 43444753 43445227 -109092032 - L1_Mus1 LINE L1 0 6567 6094 5 916 2520 62 62 3 chr5 43445360 43445697 -109091562 + L1_Mus1 LINE L1 5755 6111 -456 5 916 243 311 19 32 chr5 43445799 43445927 -109091332 + MIR SINE MIR 121 242 -20 5 916 570 29 0 0 chr5 43446401 43446469 -109090790 + (GGGGA)n Simple_repeat Simple_repeat 4 71 0 5 916 1233 171 13 9 chr5 43447220 43447444 -109089815 - URR1B DNA MER1_type 0 225 1 5 916 800 311 90 58 chr5 43449040 43449527 -109087732 + MER89 LTR ERV1 3 505 -54 5 916 3603 13 2 0 chr5 43450290 43450685 -109086574 + MTA_Mm LTR MaLR 1 396 0 5 916 9270 34 4 2 chr5 43450685 43451781 -109085478 + MTA_Mm-int LTR MaLR 1 1098 0 5 916 3603 13 2 0 chr5 43451781 43452176 -109085083 + MTA_Mm LTR MaLR 1 396 0 5 916 305 280 158 8 chr5 43452502 43452635 -109084624 + MLT1B LTR MaLR 1 153 -237 5 916 242 200 0 0 chr5 43452654 43452704 -109084555 + CT-rich Low_complexity Low_complexity 1 50 0 5 916 1116 136 0 0 chr5 43452813 43453109 -109084150 + (GA)n Simple_repeat Simple_repeat 1 296 0 5 916 553 283 91 26 chr5 43453172 43453404 -109083855 + MLT1B LTR MaLR 45 291 -99 5 916 182 328 0 17 chr5 43454320 43454379 -109082880 - L2b LINE L2 -78 3297 3240 5 916 556 284 78 133 chr5 43454661 43455173 -109082086 - MLT2B4 LTR ERVL -67 489 6 5 916 218 282 28 0 chr5 43455230 43455301 -109081958 + (GTATG)n Simple_repeat Simple_repeat 2 74 0 5 916 180 77 0 0 chr5 43455647 43455673 -109081586 + (T)n Simple_repeat Simple_repeat 1 26 0 5 916 39833 33 0 0 chr5 43455684 43461096 -109076163 - L1Md_T LINE L1 0 6582 1170 5 916 5737 170 27 32 chr5 43461102 43462618 -109074641 - L1Md_T LINE L1 -5411 1205 99 5 916 330 250 9 36 chr5 43465409 43465521 -109071738 - MLT1A1 LTR MaLR 0 408 300 5 916 273 314 150 26 chr5 43465869 43466095 -109071164 + MLT1H LTR MaLR 36 289 -260 5 916 1194 99 0 5 chr5 43466737 43466929 -109070330 + L1_Mus4 LINE L1 6443 6633 -3 5 916 378 0 0 0 chr5 43467700 43467742 -109069517 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 916 984 143 33 6 chr5 43467879 43468062 -109069197 - URR1A DNA MER1_type 0 226 39 5 916 245 319 129 13 chr5 43469175 43469325 -109067934 + Lx9 LINE L1 5796 5973 -1671 5 916 237 227 27 134 chr5 43469479 43469591 -109067668 + Lx9 LINE L1 6178 6277 -1367 5 916 2389 270 48 48 chr5 43469604 43469690 -109067569 + Lx9 LINE L1 6343 6409 -1235 5 916 516 59 0 0 chr5 43469690 43469758 -109067501 + (GGAAA)n Simple_repeat Simple_repeat 3 70 0 5 916 2389 270 48 48 chr5 43469758 43470489 -109066770 + Lx9 LINE L1 6410 7160 -484 5 916 1250 83 0 11 chr5 43470517 43470699 -109066560 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 5 916 729 188 0 0 chr5 43470701 43470845 -109066414 + GA-rich Low_complexity Low_complexity 3 146 0 5 916 468 62 0 0 chr5 43470838 43470902 -109066357 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 5 916 984 73 11 63 chr5 43470925 43471115 -109066144 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 916 366 23 0 0 chr5 43471116 43471159 -109066100 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 5 916 237 245 27 125 chr5 43471174 43471286 -109065973 + RMER1C Other Other 1242 1342 0 5 916 1750 201 7 54 chr5 43471846 43472292 -109064967 + RMER10A LTR ERVL 1 425 -17 5 916 216 298 22 67 chr5 43473960 43474050 -109063209 + MIRc SINE MIR 58 143 -125 5 916 351 0 0 0 chr5 43474107 43474146 -109063113 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 916 8281 45 0 1 chr5 43474268 43475257 -109062002 + L1Md_F2 LINE L1 4598 5585 -298 5 916 7937 55 24 0 chr5 43475258 43476231 -109061028 + L1Md_F2 LINE L1 5587 6582 0 5 916 651 296 102 28 chr5 43477447 43477472 -109059787 - MLT1C LTR MaLR 0 467 443 5 916 1882 213 56 23 chr5 43477472 43477900 -109059359 - RLTR41 LTR ERV1 0 446 5 5 916 651 296 102 28 chr5 43477900 43478274 -109058985 - MLT1C LTR MaLR -25 442 38 5 916 291 191 0 0 chr5 43478307 43478370 -109058889 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 916 245 250 117 0 chr5 43478373 43478433 -109058826 - ID4_ SINE ID -10 73 7 5 916 290 324 37 9 chr5 43478449 43478558 -109058701 - PB1D10 SINE Alu -1 116 5 5 916 303 85 0 0 chr5 43480181 43480228 -109057031 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 916 393 258 58 8 chr5 43480397 43480518 -109056741 - MIR SINE MIR -8 254 128 5 916 1387 198 117 50 chr5 43481549 43481884 -109055375 - Lx7 LINE L1 0 7696 7357 5 916 261 0 0 0 chr5 43481884 43481913 -109055346 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 916 1387 198 117 50 chr5 43481913 43481997 -109055262 - Lx7 LINE L1 -340 7356 7250 5 916 1299 256 65 23 chr5 43482004 43482403 -109054856 + Lx6 LINE L1 7044 7459 -1 5 916 776 194 233 0 chr5 43482447 43482627 -109054632 - Lx7 LINE L1 -441 7255 7034 5 916 2206 168 29 26 chr5 43482626 43483103 -109054156 + Lx7 LINE L1 5477 5954 -1742 5 916 690 194 0 0 chr5 43483267 43483391 -109053868 - B1_Mur1 SINE Alu 0 149 26 5 916 279 157 130 91 chr5 43483447 43483601 -109053658 - Lx9 LINE L1 -5 7639 7480 5 916 26 30 0 0 chr5 43483602 43483635 -109053624 + AT_rich Low_complexity Low_complexity 1 33 0 5 916 528 240 80 0 chr5 43484115 43484240 -109053019 + B1_Mur1 SINE Alu 15 149 0 5 916 10316 46 0 2 chr5 43486381 43488989 -109048270 - L1Md_T LINE L1 -3328 2558 1 5 916 26153 26 0 0 chr5 43489003 43492039 -109045220 + L1Md_T LINE L1 2554 5589 -297 5 916 9178 5 0 0 chr5 43492039 43493106 -109044153 + L1Md_T LINE L1 5590 6585 0 5 916 357 43 0 0 chr5 43493582 43493629 -109043630 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 916 450 65 0 0 chr5 43493699 43493761 -109043498 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 916 438 88 0 0 chr5 43493831 43493899 -109043360 + (CA)n Simple_repeat Simple_repeat 2 69 0 6 916 382 308 95 20 chr5 43494388 43494640 -109042619 + B4A SINE B4 7 282 -10 6 916 193 274 82 0 chr5 43494729 43494802 -109042457 + MIRb SINE MIR 169 247 -21 6 916 186 71 0 0 chr5 43496483 43496511 -109040748 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 916 226 289 0 0 chr5 43496924 43496976 -109040283 - L2c LINE L2 -60 3327 3276 6 916 210 329 48 24 chr5 43497986 43498070 -109039189 - MIRc SINE MIR -98 170 85 6 916 423 83 0 0 chr5 43499726 43499786 -109037473 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 916 263 314 47 19 chr5 43500025 43500132 -109037127 - MER5A DNA MER1_type -79 110 1 1 916 1209 128 154 0 chr5 43500282 43500477 -109036782 + URR1A DNA MER1_type 1 225 -1 2 916 223 175 17 34 chr5 43500712 43500771 -109036488 + B3A SINE B2 1 58 -140 3 916 280 253 25 0 chr5 43500825 43500904 -109036355 + (CATA)n Simple_repeat Simple_repeat 3 83 0 4 916 342 330 121 76 chr5 43501949 43502422 -109034837 - L2 LINE L2 -905 2514 2021 5 916 479 238 97 1 chr5 43502620 43502744 -109034515 - B1F1 SINE Alu -11 138 2 6 916 183 230 34 21 chr5 43506035 43506099 -109031160 + MIR SINE MIR 42 110 -158 7 916 5186 126 64 16 chr5 43506606 43507452 -109029807 - RMER19B LTR ERVK -16 886 1 8 916 243 310 0 10 chr5 43507542 43507643 -109029616 + GA-rich Low_complexity Low_complexity 2 101 0 9 916 240 100 0 0 chr5 43508457 43508497 -109028762 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 916 234 0 0 0 chr5 43509211 43509237 -109028022 + (A)n Simple_repeat Simple_repeat 1 26 0 1 916 335 330 25 123 chr5 43509453 43509688 -109027571 - MIRb SINE MIR -28 240 29 1 916 2428 108 47 0 chr5 43509868 43510211 -109027048 + Lx2 LINE L1 6639 6997 0 1 916 270 354 0 12 chr5 43510536 43510616 -109026643 - PB1D10 SINE Alu -37 80 2 1 916 344 255 60 60 chr5 43510933 43511083 -109026176 + MLT1C LTR MaLR 82 231 -159 1 916 1011 176 0 3 chr5 43511083 43511388 -109025871 + GA-rich Low_complexity Low_complexity 1 304 0 1 916 449 199 0 7 chr5 43511388 43511404 -109025855 + polypurine Low_complexity Low_complexity 127 142 0 1 916 427 244 106 32 chr5 43511465 43511544 -109025715 + MLT1C LTR MaLR 336 427 -40 1 916 1552 138 206 13 chr5 43511544 43511845 -109025414 + RLTR15 LTR ERVK 1 359 0 1 916 427 244 106 32 chr5 43511845 43511888 -109025371 + MLT1C LTR MaLR 428 467 0 1 916 594 28 0 0 chr5 43513146 43513218 -109024041 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 916 221 0 35 0 chr5 43514053 43514082 -109023177 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 916 714 55 0 0 chr5 43514250 43514341 -109022918 + (CATATA)n Simple_repeat Simple_repeat 1 91 0 2 916 294 318 45 105 chr5 43514459 43514631 -109022628 + MIRb SINE MIR 1 166 -102 2 114 1864 189 46 48 chr5 43515822 43516255 -109021004 - BGLII_B LTR ERVK -9 432 1 2 917 2156 136 196 3 chr5 43516527 43516880 -109020379 + MTC LTR MaLR 1 421 0 2 917 518 291 13 54 chr5 43516953 43517102 -109020157 + B1F2 SINE Alu 6 148 -1 2 917 189 308 209 0 chr5 43517190 43517281 -109019978 - MIR SINE MIR -71 137 28 2 917 293 263 97 39 chr5 43517717 43517820 -109019439 - MLT1C LTR MaLR -73 394 286 2 917 462 269 169 40 chr5 43517900 43518101 -109019158 - B4A SINE B4 -65 227 1 2 917 1476 337 48 30 chr5 43518315 43518410 -109018849 - MER44C DNA MER2_type -7 726 641 2 917 723 24 0 0 chr5 43518410 43518495 -109018764 + (TTCTCC)n Simple_repeat Simple_repeat 3 87 0 3 917 1271 55 0 0 chr5 43518496 43518642 -109018617 - B1_Mus2 SINE Alu 0 147 2 3 917 1477 317 54 5 chr5 43518642 43519149 -109018110 - MER44C DNA MER2_type -93 640 110 2 917 359 331 39 32 chr5 43519152 43519308 -109017951 - B3 SINE B2 -6 210 54 3 917 1654 201 24 120 chr5 43519308 43519485 -109017774 + ORR1C2 LTR MaLR 1 154 -230 3 917 1184 82 7 0 chr5 43519485 43519632 -109017627 + B1_Mus1 SINE Alu 1 148 0 3 917 1654 201 24 120 chr5 43519632 43519879 -109017380 + ORR1C2 LTR MaLR 155 384 0 3 917 3121 232 93 33 chr5 43519879 43520729 -109016530 + ORR1C2-int LTR MaLR 1 901 -469 3 917 1074 182 32 28 chr5 43520762 43520992 -109016267 + ORR1C2 LTR MaLR 97 383 -1 3 917 225 233 0 0 chr5 43520992 43521030 -109016229 - B2_Mm2 SINE B2 -155 40 3 3 917 345 265 48 58 chr5 43521036 43521140 -109016119 - MER44C DNA MER2_type -613 120 18 2 917 230 291 0 0 chr5 43522524 43522579 -109014680 + MER58A DNA MER1_type 1 55 -169 3 917 302 339 55 0 chr5 43522606 43522715 -109014544 + MER58A DNA MER1_type 105 219 -5 3 917 477 0 0 0 chr5 43522899 43522952 -109014307 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 917 242 337 0 59 chr5 43523457 43523542 -109013717 + ID4 SINE ID 2 81 -2 3 917 1368 26 11 7 chr5 43523973 43524255 -109013004 + (TAGA)n Simple_repeat Simple_repeat 1 283 0 3 917 407 131 61 24 chr5 43524268 43524432 -109012827 + (TAGA)n Simple_repeat Simple_repeat 4 173 0 3 917 252 0 0 0 chr5 43528614 43528642 -109008617 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 917 674 253 13 0 chr5 43529204 43529362 -109007897 + RMER30 DNA MER1_type 4 163 -39 4 917 226 258 15 61 chr5 43530361 43530427 -109006832 - MLT1D LTR MaLR -9 586 524 4 917 198 191 0 0 chr5 43531115 43531162 -109006097 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 4 917 257 182 41 102 chr5 43531162 43531260 -109005999 - YREP_Mm Unknown Unknown -1492 320 229 4 917 285 317 46 37 chr5 43531172 43531280 -109005979 + PB1D10 SINE Alu 5 113 -4 4 917 311 291 1 44 chr5 43531676 43531795 -109005464 - MIR SINE MIR -92 176 65 4 917 242 226 55 77 chr5 43532874 43532965 -109004294 - MLT1D LTR MaLR 0 467 379 4 917 485 286 83 0 chr5 43533133 43533266 -109003993 - MLT1D LTR MaLR -344 161 18 4 917 199 273 97 35 chr5 43535182 43535296 -109001963 - MIRc SINE MIR -130 138 18 4 917 297 0 0 0 chr5 43535432 43535465 -109001794 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 917 479 292 46 41 chr5 43535673 43535869 -109001390 - Tigger5 DNA MER2_type -71 2335 2139 4 917 228 386 47 33 chr5 43536184 43536398 -109000861 + MIRb SINE MIR 41 257 -11 5 917 187 293 84 61 chr5 43537626 43537757 -108999502 + L2c LINE L2 3049 3182 -205 5 917 234 91 0 0 chr5 43538921 43538954 -108998305 + (CATA)n Simple_repeat Simple_repeat 2 34 0 5 917 849 264 100 36 chr5 43538979 43539258 -108998001 - MLT2C2 LTR ERVL -60 404 108 5 917 253 228 32 11 chr5 43539260 43539353 -108997906 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 5 917 187 250 0 0 chr5 43540236 43540272 -108996987 + MIRc SINE MIR 128 163 -105 5 917 21 0 0 0 chr5 43541361 43541382 -108995877 + AT_rich Low_complexity Low_complexity 1 21 0 5 917 246 308 0 0 chr5 43541993 43542071 -108995188 - L1MD2 LINE L1 -69 6290 6213 5 917 325 313 32 26 chr5 43542096 43542250 -108995009 + Ricksha_c DNA MuDR 357 511 -1537 5 917 569 110 10 0 chr5 43542309 43542409 -108994850 + (TC)n Simple_repeat Simple_repeat 2 102 0 5 917 969 232 70 8 chr5 43542453 43542709 -108994550 + Ricksha_c DNA MuDR 588 859 -1189 5 917 336 127 0 0 chr5 43542800 43542855 -108994404 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 917 204 312 88 44 chr5 43542977 43543091 -108994168 - MIR SINE MIR -64 144 26 6 917 378 0 0 0 chr5 43543554 43543596 -108993663 + (T)n Simple_repeat Simple_repeat 1 42 0 6 917 338 375 60 45 chr5 43544177 43544785 -108992474 - L2a LINE L2 -266 3160 2541 6 917 408 273 124 0 chr5 43546291 43546412 -108990847 - B1F2 SINE Alu -1 148 13 6 917 860 286 39 5 chr5 43546443 43546647 -108990612 - B3 SINE B2 0 216 6 6 917 615 190 33 0 chr5 43546782 43546903 -108990356 - Lx6 LINE L1 -371 7089 6965 6 917 234 0 0 0 chr5 43547080 43547106 -108990153 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 917 4203 134 21 23 chr5 43547131 43547793 -108989466 - Lx4B LINE L1 -109 6949 6289 6 917 1513 75 16 16 chr5 43548628 43548819 -108988440 + B2_Mm2 SINE B2 1 191 -4 6 917 327 340 18 84 chr5 43550216 43550383 -108986876 + RSINE1 SINE B4 5 160 -5 7 917 280 316 29 21 chr5 43550861 43551012 -108986247 + MuRRS4-int LTR ERV1 4572 4690 -373 7 917 294 29 0 0 chr5 43551012 43551047 -108986212 + (CTA)n Simple_repeat Simple_repeat 3 37 0 7 917 378 0 0 0 chr5 43551047 43551089 -108986170 + (TAA)n Simple_repeat Simple_repeat 1 42 0 7 917 22 35 0 0 chr5 43551826 43551855 -108985404 + AT_rich Low_complexity Low_complexity 1 29 0 7 917 276 303 41 34 chr5 43552302 43552449 -108984810 - ORR1E LTR MaLR -211 148 1 7 917 266 356 13 64 chr5 43552636 43552792 -108984467 + Lx8 LINE L1 7189 7336 -137 7 917 423 311 70 20 chr5 43553101 43553300 -108983959 - B3A SINE B2 -6 210 2 7 917 1160 263 93 50 chr5 43553457 43553918 -108983341 + Lx9 LINE L1 6963 7443 -201 7 917 268 333 0 13 chr5 43554691 43554767 -108982492 - B1F SINE Alu -73 76 2 7 917 297 0 0 0 chr5 43554840 43554873 -108982386 + (TA)n Simple_repeat Simple_repeat 1 33 0 8 917 951 158 207 0 chr5 43555433 43555655 -108981604 - L1_Mur3 LINE L1 -7402 310 43 8 917 254 26 53 0 chr5 43556057 43556095 -108981164 + (TTTTTG)n Simple_repeat Simple_repeat 6 45 0 8 917 1245 62 7 0 chr5 43556095 43556240 -108981019 - B1_Mm SINE Alu 0 147 2 8 917 342 0 0 0 chr5 43556363 43556401 -108980858 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 917 573 301 30 18 chr5 43556407 43556576 -108980683 - B3A SINE B2 -27 171 1 8 917 384 229 126 9 chr5 43556806 43556911 -108980348 - MTD LTR MaLR 0 419 267 8 917 263 271 121 57 chr5 43557253 43557394 -108979865 - MTD LTR MaLR -129 292 143 8 917 2141 239 80 30 chr5 43557415 43557992 -108979267 - Lx6 LINE L1 0 7460 6855 8 917 407 256 113 0 chr5 43557992 43558125 -108979134 - MTD LTR MaLR -267 152 5 8 917 25 51 0 0 chr5 43558127 43558166 -108979093 + AT_rich Low_complexity Low_complexity 1 39 0 8 917 493 31 0 0 chr5 43558578 43558642 -108978617 - L1_Mus1 LINE L1 0 6567 6504 8 917 229 372 11 48 chr5 43558965 43559154 -108978105 + MLT1C LTR MaLR 286 467 0 9 917 369 256 11 11 chr5 43559305 43559392 -108977867 + B4 SINE B4 2 88 -204 9 917 275 292 29 79 chr5 43559700 43559945 -108977314 + L1ME1 LINE L1 5709 5945 -219 9 917 1122 241 65 6 chr5 43560000 43560065 -108977194 + Lx9 LINE L1 7125 7205 -439 9 917 357 24 0 0 chr5 43560065 43560107 -108977152 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 917 1122 241 65 6 chr5 43560107 43560363 -108976896 + Lx9 LINE L1 7206 7464 -180 9 917 432 0 0 0 chr5 43560364 43560412 -108976847 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 917 310 300 206 27 chr5 43561281 43561538 -108975721 + L2a LINE L2 2144 2446 -973 9 917 237 343 73 0 chr5 43561715 43561852 -108975407 + L2a LINE L2 3280 3426 0 9 917 1012 356 52 30 chr5 43562074 43562703 -108974556 - MER82 DNA MER2_type -10 643 1 9 917 250 287 85 113 chr5 43562737 43563232 -108974027 - HAL1b LINE L1 -215 1794 1314 9 917 816 11 0 0 chr5 43563338 43563431 -108973828 + (GA)n Simple_repeat Simple_repeat 2 94 0 9 917 396 324 0 66 chr5 43563613 43563795 -108973464 + MER104 DNA Tc2 2 171 -10 1 917 323 333 0 10 chr5 43563973 43564076 -108973183 + L3 LINE CR1 4152 4253 -236 1 917 809 279 8 21 chr5 43564105 43564333 -108972926 + ORR1E LTR MaLR 1 221 -149 1 917 815 139 24 0 chr5 43564333 43564499 -108972760 + CT-rich Low_complexity Low_complexity 1 170 0 1 917 5652 107 96 82 chr5 43564500 43564626 -108972633 - Lx LINE L1 -1 6653 6521 1 917 195 42 0 0 chr5 43564626 43564650 -108972609 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 1 917 5652 107 96 82 chr5 43564650 43565364 -108971895 - Lx LINE L1 -134 6520 5790 1 917 1260 27 0 0 chr5 43565364 43565511 -108971748 - B1_Mm SINE Alu 0 147 1 1 917 5652 108 68 57 chr5 43565511 43565811 -108971448 - Lx LINE L1 -87 5796 5497 1 917 360 0 0 0 chr5 43566009 43566049 -108971210 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 917 853 264 63 93 chr5 43566135 43566469 -108970790 - ORR1D2 LTR MaLR -17 353 18 1 917 4798 77 0 5 chr5 43566469 43567099 -108970160 - L1_Mus4 LINE L1 0 6636 6010 1 917 853 264 63 93 chr5 43567099 43567128 -108970131 - ORR1D2 LTR MaLR -353 17 1 1 917 581 260 73 44 chr5 43567701 43567906 -108969353 - MTEa LTR MaLR -163 216 6 1 917 24 0 0 0 chr5 43567988 43568012 -108969247 + AT_rich Low_complexity Low_complexity 1 24 0 1 917 306 0 0 0 chr5 43568464 43568498 -108968761 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 1 917 1134 70 0 20 chr5 43568508 43568654 -108968605 - B1_Mus1 SINE Alu -5 143 1 1 917 553 169 212 0 chr5 43568907 43569025 -108968234 - B1_Mur2 SINE Alu -5 144 2 1 917 264 211 18 0 chr5 43569422 43569479 -108967780 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 917 262 337 134 52 chr5 43569479 43569748 -108967511 - B4 SINE B4 0 292 2 1 917 257 414 0 35 chr5 43570390 43570535 -108966724 + ID_B1 SINE B4 3 142 -82 1 917 266 297 0 0 chr5 43570661 43570735 -108966524 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 917 181 200 25 0 chr5 43571484 43571524 -108965735 + MIRm SINE MIR 117 157 -119 1 917 697 218 0 3 chr5 43571703 43571849 -108965410 + B1_Mur2 SINE Alu 2 144 -6 1 917 216 0 0 0 chr5 43572387 43572411 -108964848 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 917 387 0 0 0 chr5 43572419 43572462 -108964797 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 917 324 242 66 1 chr5 43572783 43572886 -108964373 + Lx8 LINE L1 5813 5932 -1712 1 917 328 266 69 53 chr5 43573490 43573651 -108963608 + MIR SINE MIR 16 178 -98 1 917 219 88 0 0 chr5 43573671 43573705 -108963554 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1 917 1623 230 64 0 chr5 43574851 43575242 -108962017 + MTD LTR MaLR 1 416 -3 1 917 429 20 0 0 chr5 43575976 43576026 -108961233 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 917 239 229 13 103 chr5 43576049 43576127 -108961132 + MTEa LTR MaLR 22 92 -287 1 917 238 258 109 63 chr5 43576183 43576357 -108960902 + MTEa LTR MaLR 67 248 -111 1 917 513 32 0 0 chr5 43577568 43577631 -108959628 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 917 356 260 38 30 chr5 43578666 43578797 -108958462 + ORR1E LTR MaLR 20 151 -208 1 917 974 248 131 7 chr5 43578786 43579083 -108958176 - MTD LTR MaLR -83 336 3 1 917 273 228 104 47 chr5 43579216 43579322 -108957937 - MLT1A1 LTR MaLR -296 112 1 1 917 33 25 0 0 chr5 43579837 43579877 -108957382 + AT_rich Low_complexity Low_complexity 1 40 0 1 917 552 316 0 0 chr5 43579978 43580146 -108957113 - Lx9 LINE L1 -203 7441 7274 1 917 1768 258 37 33 chr5 43580146 43580692 -108956567 + Lx9 LINE L1 6701 7248 -396 1 917 201 196 0 0 chr5 43580740 43580786 -108956473 + A-rich Low_complexity Low_complexity 5 50 0 1 917 260 384 83 18 chr5 43581332 43581560 -108955699 - LTR16B1 LTR ERVL -2 478 236 1 917 318 26 0 0 chr5 43582017 43582056 -108955203 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 917 6105 66 0 8 chr5 43582607 43583386 -108953873 + L1Md_F2 LINE L1 5804 6576 -6 1 917 216 97 0 0 chr5 43583433 43583464 -108953795 + (A)n Simple_repeat Simple_repeat 1 31 0 1 917 279 191 98 40 chr5 43584603 43584709 -108952550 - L1ME2 LINE L1 -193 6376 6270 1 917 468 117 0 0 chr5 43585090 43585167 -108952092 + (CAGA)n Simple_repeat Simple_repeat 4 80 0 1 917 25 31 0 0 chr5 43585259 43585291 -108951968 + AT_rich Low_complexity Low_complexity 1 32 0 1 917 185 329 0 12 chr5 43586548 43586628 -108950631 + MIRb SINE MIR 88 166 -102 1 917 1131 248 33 79 chr5 43586709 43587275 -108949984 - L1ME2 LINE L1 -582 6168 5613 1 917 1108 261 106 115 chr5 43587273 43588495 -108948764 - L1ME2 LINE L1 -3984 2649 1437 1 917 4530 67 0 10 chr5 43588495 43589081 -108948178 - L1Md_F2 LINE L1 -2 6580 6001 1 917 1108 261 106 115 chr5 43589081 43589335 -108947924 - L1ME2 LINE L1 -5197 1436 1188 1 917 316 247 78 26 chr5 43589350 43589504 -108947755 + L1MDa LINE L1 1383 1544 -5089 1 917 245 19 94 19 chr5 43589860 43589913 -108947346 + (TTATA)n Simple_repeat Simple_repeat 3 59 0 1 917 677 325 21 86 chr5 43590135 43590461 -108946798 + ORR1E LTR MaLR 20 324 -35 1 917 665 335 91 33 chr5 43590468 43590866 -108946393 - L1ME2 LINE L1 -6066 567 147 1 917 1576 187 46 76 chr5 43591145 43591185 -108946074 - ORR1C2 LTR MaLR -2 382 346 1 917 1111 82 0 7 chr5 43591185 43591324 -108945935 + B1_Mus1 SINE Alu 1 139 -9 1 917 216 0 0 0 chr5 43591324 43591348 -108945911 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 917 1576 187 46 76 chr5 43591356 43591503 -108945756 - ORR1C2 LTR MaLR -39 345 187 1 917 180 77 0 0 chr5 43591503 43591529 -108945730 + (CAGAGA)n Simple_repeat Simple_repeat 2 27 0 1 917 1576 187 46 76 chr5 43591529 43591734 -108945525 - ORR1C2 LTR MaLR -198 186 2 1 917 889 222 53 41 chr5 43591799 43592137 -108945122 - RLTR15 LTR ERVK -17 342 1 1 917 633 81 0 0 chr5 43592420 43592507 -108944752 + B1_Mus1 SINE Alu 1 87 -61 1 917 198 91 0 0 chr5 43592510 43592543 -108944716 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 917 513 269 118 7 chr5 43592571 43592706 -108944553 - RSINE1 SINE B4 -14 151 2 1 917 741 233 5 43 chr5 43593255 43593434 -108943825 - ORR1C2 LTR MaLR -15 369 199 1 917 243 0 0 0 chr5 43593434 43593461 -108943798 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 917 741 233 5 43 chr5 43593461 43593492 -108943767 - ORR1C2 LTR MaLR -186 198 168 1 917 285 159 0 0 chr5 43593494 43593557 -108943702 + GA-rich Low_complexity Low_complexity 2 64 0 1 917 625 238 5 145 chr5 43593557 43593778 -108943481 - ORR1C2 LTR MaLR -184 190 1 1 917 4512 210 58 45 chr5 43593778 43594964 -108942295 - ORR1C2-int LTR MaLR 0 1370 170 1 917 195 42 0 0 chr5 43594973 43594997 -108942262 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 917 896 143 0 58 chr5 43595102 43595258 -108942001 - B1_Mus2 SINE Alu 0 147 1 1 917 797 294 69 39 chr5 43595298 43595603 -108941656 - Lx8 LINE L1 -98 7375 7062 1 917 2445 29 16 3 chr5 43595984 43596301 -108940958 + MT2_Mm LTR ERVL 53 373 -120 1 917 260 347 95 6 chr5 43596416 43596584 -108940675 - L2c LINE L2 -8 3379 3197 1 917 185 0 40 0 chr5 43597338 43597363 -108939896 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 917 334 301 100 29 chr5 43598321 43598461 -108938798 - L2c LINE L2 -878 2541 2392 1 917 379 279 17 17 chr5 43598631 43598795 -108938464 + B4 SINE B4 1 165 0 1 917 6724 16 1 0 chr5 43599179 43599920 -108937339 + RLTR4_Mm LTR ERV1 1 742 0 1 917 68162 15 6 0 chr5 43599920 43607479 -108929780 + RLTR4_MM-int LTR ERV1 1 7601 0 1 917 6709 18 1 0 chr5 43607479 43608220 -108929039 + RLTR4_Mm LTR ERV1 1 742 0 1 917 252 336 29 0 chr5 43608236 43608340 -108928919 + MER5B DNA MER1_type 3 109 -69 1 917 222 275 21 42 chr5 43608940 43609035 -108928224 - BC1_Mm scRNA scRNA -49 103 11 1 917 1247 154 8 38 chr5 43609107 43609343 -108927916 - MT2B LTR ERVL -372 229 1 1 917 330 214 39 39 chr5 43609252 43609354 -108927905 - ORR1A3-int LTR MaLR -1259 704 603 1 917 186 64 106 0 chr5 43610594 43610641 -108926618 + T-rich Low_complexity Low_complexity 5 56 0 1 917 556 14 0 0 chr5 43610641 43610713 -108926546 - B1_Mus2 SINE Alu 0 147 76 1 917 638 123 117 47 chr5 43611652 43611780 -108925479 + B1_Mur2 SINE Alu 13 149 0 1 917 248 222 19 0 chr5 43611901 43611955 -108925304 - MTD LTR MaLR -7 414 360 1 917 705 243 81 17 chr5 43611951 43612123 -108925136 - MTD LTR MaLR -233 186 4 1 917 269 296 107 66 chr5 43612664 43612935 -108924324 - Charlie2a DNA MER1_type -42 2819 2538 1 917 288 0 0 0 chr5 43612946 43612978 -108924281 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 917 279 0 0 0 chr5 43612978 43613008 -108924251 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 917 282 288 100 17 chr5 43613087 43613317 -108923942 - Charlie2a DNA MER1_type -1365 1496 1248 1 917 278 317 64 5 chr5 43613356 43613559 -108923700 + L1M4 LINE L1 2174 2388 -3758 1 917 470 244 60 47 chr5 43613755 43613970 -108923289 + L1M4 LINE L1 3512 3729 -2417 1 917 305 187 312 0 chr5 43614142 43614246 -108923013 + L1M4 LINE L1 3710 3842 -2304 1 917 1112 69 7 0 chr5 43614255 43614399 -108922860 + B1_Mus1 SINE Alu 2 146 -2 1 917 312 0 62 0 chr5 43614399 43614447 -108922812 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 1 917 1135 288 32 62 chr5 43616305 43616675 -108920584 + MTEa LTR MaLR 6 364 -15 1 917 634 220 11 39 chr5 43616933 43617113 -108920146 - L1M2 LINE L1 -470 5821 5647 1 917 289 261 14 0 chr5 43617131 43617200 -108920059 + ID4 SINE ID 14 83 0 1 917 215 157 0 19 chr5 43618331 43618383 -108918876 + CT-rich Low_complexity Low_complexity 2 52 0 1 917 970 308 65 50 chr5 43620230 43620750 -108916509 - MT2A LTR ERVL -5 528 1 1 917 362 333 75 5 chr5 43621104 43621303 -108915956 - L2 LINE L2 -674 2745 2533 1 917 367 306 181 46 chr5 43621356 43621771 -108915488 - L2 LINE L2 -1546 1873 1403 1 917 289 211 0 112 chr5 43622835 43622915 -108914344 - B1F SINE Alu -65 84 14 1 917 180 0 0 0 chr5 43624366 43624386 -108912873 + (CGG)n Simple_repeat Simple_repeat 1 20 0 1 917 272 235 0 23 chr5 43624465 43624552 -108912707 + (CGG)n Simple_repeat Simple_repeat 3 87 0 1 917 221 291 16 16 chr5 43624793 43624922 -108912337 + (CCG)n Simple_repeat Simple_repeat 3 131 0 1 917 183 42 0 0 chr5 43625122 43625146 -108912113 + (TCC)n Simple_repeat Simple_repeat 3 26 0 1 917 207 0 0 0 chr5 43625264 43625287 -108911972 + (CCG)n Simple_repeat Simple_repeat 3 25 0 1 917 26 30 0 0 chr5 43625729 43625762 -108911497 + GC_rich Low_complexity Low_complexity 1 33 0 1 917 324 242 0 0 chr5 43625830 43625925 -108911334 + (CCG)n Simple_repeat Simple_repeat 1 95 0 1 917 22 35 0 0 chr5 43625941 43625970 -108911289 + GC_rich Low_complexity Low_complexity 1 29 0 1 917 219 88 0 0 chr5 43626110 43626144 -108911115 + (CGG)n Simple_repeat Simple_repeat 1 34 0 1 917 23 0 0 0 chr5 43626598 43626621 -108910638 + GC_rich Low_complexity Low_complexity 1 23 0 1 917 243 0 0 0 chr5 43628045 43628072 -108909187 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 917 325 285 40 8 chr5 43632049 43632173 -108905086 + (TATG)n Simple_repeat Simple_repeat 3 130 0 1 917 691 242 65 16 chr5 43632197 43632382 -108904877 - B4 SINE B4 -98 194 1 2 917 302 337 19 19 chr5 43632427 43632530 -108904729 - PB1D10 SINE Alu -1 116 14 2 917 187 357 81 10 chr5 43634275 43634374 -108902885 + MER5A DNA MER1_type 84 189 0 2 917 459 78 0 0 chr5 43635065 43635129 -108902130 + (TA)n Simple_repeat Simple_repeat 1 64 0 2 917 23 0 0 0 chr5 43635750 43635773 -108901486 + AT_rich Low_complexity Low_complexity 1 23 0 2 917 1429 184 181 17 chr5 43636127 43636395 -108900864 - MTC LTR MaLR -1 420 138 2 917 183 100 0 0 chr5 43636395 43636425 -108900834 + (CAAT)n Simple_repeat Simple_repeat 1 30 0 2 917 1429 184 181 17 chr5 43636425 43636515 -108900744 - MTC LTR MaLR -284 137 4 2 917 423 167 178 0 chr5 43636951 43637041 -108900218 + PB1D10 SINE Alu 3 108 -9 2 917 824 274 113 75 chr5 43638048 43638474 -108898785 - MLT1F LTR MaLR 0 548 107 2 917 203 170 0 60 chr5 43639222 43639272 -108897987 - L3 LINE CR1 -592 3897 3851 2 917 432 250 56 49 chr5 43639499 43639642 -108897617 + Tigger11a DNA MER2_type 10 153 -582 2 917 25 95 0 0 chr5 43640649 43640723 -108896536 + AT_rich Low_complexity Low_complexity 1 74 0 2 917 33 0 0 0 chr5 43640759 43640792 -108896467 + AT_rich Low_complexity Low_complexity 1 33 0 2 917 263 284 20 59 chr5 43640892 43640993 -108896266 + PB1D7 SINE Alu 23 119 -1 2 917 31 0 0 0 chr5 43642182 43642213 -108895046 + AT_rich Low_complexity Low_complexity 1 31 0 2 917 1362 151 28 44 chr5 43642404 43642723 -108894536 - Lx7 LINE L1 0 7696 7383 2 917 279 169 82 27 chr5 43643198 43643271 -108893988 + CT-rich Low_complexity Low_complexity 5 81 0 2 917 452 18 0 17 chr5 43643271 43643329 -108893930 + (TTTCC)n Simple_repeat Simple_repeat 4 60 0 2 917 261 57 0 0 chr5 43643589 43643624 -108893635 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 917 329 306 214 28 chr5 43643847 43644062 -108893197 - HAL1 LINE L1 -1577 930 676 2 917 192 269 118 63 chr5 43644538 43644665 -108892594 + MIRm SINE MIR 138 271 -5 2 917 371 304 182 16 chr5 43644854 43644968 -108892291 - Tigger5 DNA MER2_type -50 2356 2216 2 917 260 221 29 14 chr5 43644968 43645037 -108892222 + ID4_ SINE ID 3 72 -11 2 917 371 304 182 16 chr5 43645037 43645109 -108892150 - Tigger5 DNA MER2_type -191 2215 2140 2 917 187 79 0 50 chr5 43645113 43645153 -108892106 + (TTTTTA)n Simple_repeat Simple_repeat 2 39 0 2 114 8923 83 9 1 chr5 43645529 43647612 -108889647 - L1_Mus1 LINE L1 0 6567 4468 2 918 187 250 250 11 chr5 43648014 43648103 -108889156 - MIRb SINE MIR -158 104 2 2 918 423 360 43 6 chr5 43648302 43648464 -108888795 - Tigger7 DNA MER2_type -2202 289 122 2 918 323 235 131 10 chr5 43648713 43648812 -108888447 - L2a LINE L2 -4 3422 3312 2 918 190 355 42 31 chr5 43648965 43649061 -108888198 - L2a LINE L2 -361 3065 2969 2 918 209 176 0 0 chr5 43649182 43649216 -108888043 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 918 727 244 6 42 chr5 43649399 43649566 -108887693 - RSINE1 SINE B4 -4 161 1 2 918 1354 229 113 0 chr5 43649783 43650119 -108887140 + ORR1C2 LTR MaLR 11 384 0 2 918 228 373 93 28 chr5 43650124 43650339 -108886920 - MLT1J LTR MaLR -153 359 131 2 918 372 317 58 9 chr5 43650583 43650794 -108886465 + MIR SINE MIR 46 262 0 2 918 251 324 26 35 chr5 43653141 43653256 -108884003 + PB1 SINE Alu 2 115 -12 2 918 301 269 144 33 chr5 43653368 43653549 -108883710 + MIRb SINE MIR 45 245 -23 2 918 217 163 0 20 chr5 43654507 43654557 -108882702 + T-rich Low_complexity Low_complexity 5 53 0 2 918 21 36 0 0 chr5 43654672 43654700 -108882559 + AT_rich Low_complexity Low_complexity 1 28 0 2 918 277 358 33 19 chr5 43655312 43655449 -108881810 + MIRb SINE MIR 85 228 -40 2 918 434 250 30 0 chr5 43656205 43656305 -108880954 + B1_Mur1 SINE Alu 39 141 -8 2 918 568 248 14 7 chr5 43656882 43657020 -108880239 + ID_B1 SINE B4 84 222 -2 2 918 490 244 37 31 chr5 43657910 43658071 -108879188 - RSINE1 SINE B4 0 165 4 2 918 195 186 48 48 chr5 43659929 43659991 -108877268 + MIRc SINE MIR 207 268 0 2 918 225 342 0 40 chr5 43663284 43663360 -108873899 + MER58B DNA MER1_type 223 295 -46 2 918 32 26 0 0 chr5 43663409 43663448 -108873811 + AT_rich Low_complexity Low_complexity 1 39 0 2 918 212 254 18 0 chr5 43665114 43665169 -108872090 + GA-rich Low_complexity Low_complexity 3 58 0 2 918 204 250 0 0 chr5 43665514 43665578 -108871681 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 2 918 481 258 75 37 chr5 43665585 43665746 -108871513 - RMER5 LTR ERV1 -7 527 361 2 918 301 264 11 11 chr5 43666440 43666528 -108870731 - RMER5 LTR ERV1 -217 317 230 2 918 198 0 0 0 chr5 43667542 43667564 -108869695 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 918 354 23 0 0 chr5 43667901 43667944 -108869315 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 918 390 248 96 32 chr5 43670051 43670176 -108867083 + RSINE1 SINE B4 2 134 -31 2 918 5039 36 0 5 chr5 43670325 43670910 -108866349 - L1Md_F2 LINE L1 0 6582 6003 2 918 578 258 76 50 chr5 43671348 43671706 -108865553 + L1_Rod LINE L1 5081 5456 -421 2 918 471 248 0 0 chr5 43673091 43673228 -108864031 + (TA)n Simple_repeat Simple_repeat 2 138 0 2 918 190 319 69 0 chr5 43674537 43674609 -108862650 - L2 LINE L2 -1378 2041 1965 2 918 21 0 0 0 chr5 43675803 43675824 -108861435 + AT_rich Low_complexity Low_complexity 1 21 0 2 918 189 74 0 0 chr5 43678857 43678884 -108858375 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 918 27 0 0 0 chr5 43679488 43679515 -108857744 + AT_rich Low_complexity Low_complexity 1 27 0 2 918 23 68 0 0 chr5 43680448 43680492 -108856767 + AT_rich Low_complexity Low_complexity 1 44 0 2 918 22 56 0 0 chr5 43680775 43680811 -108856448 + AT_rich Low_complexity Low_complexity 1 36 0 2 918 23 54 0 0 chr5 43680892 43680929 -108856330 + AT_rich Low_complexity Low_complexity 1 37 0 2 918 217 257 198 0 chr5 43681265 43681366 -108855893 + B3A SINE B2 4 124 -74 2 918 256 261 46 0 chr5 43681766 43681831 -108855428 + Lx8 LINE L1 6944 7011 -462 2 918 482 270 43 30 chr5 43681831 43681995 -108855264 + B3A SINE B2 11 176 -22 2 918 203 125 25 0 chr5 43681995 43682035 -108855224 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 918 573 242 109 99 chr5 43682300 43682341 -108854918 + B3 SINE B2 2 37 -179 2 918 1205 102 17 0 chr5 43682341 43682518 -108854741 + L1_Mus3 LINE L1 6459 6638 0 2 918 573 242 109 99 chr5 43682518 43682678 -108854581 + B3 SINE B2 38 205 -11 2 918 30 45 0 0 chr5 43682901 43682945 -108854314 + AT_rich Low_complexity Low_complexity 1 44 0 2 918 507 33 0 0 chr5 43683026 43683087 -108854172 + (TGG)n Simple_repeat Simple_repeat 1 61 0 2 918 3068 50 41 28 chr5 43683452 43683843 -108853416 - MTA_Mm LTR MaLR 0 396 1 2 918 745 307 78 41 chr5 43683851 43684119 -108853140 + B4A SINE B4 11 288 -4 2 918 482 223 165 26 chr5 43684218 43684333 -108852926 + B3A SINE B2 5 135 -63 2 918 342 0 0 0 chr5 43684552 43684590 -108852669 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 918 692 266 134 33 chr5 43685097 43685511 -108851748 + L1MB3 LINE L1 5693 6139 -44 2 918 727 194 14 0 chr5 43685516 43685655 -108851604 + B3A SINE B2 3 143 -55 2 918 4597 87 17 5 chr5 43685815 43686407 -108850852 - MT2B LTR ERVL 0 601 3 2 918 342 0 0 0 chr5 43686578 43686616 -108850643 + (T)n Simple_repeat Simple_repeat 1 38 0 2 918 680 324 55 50 chr5 43687406 43687786 -108849473 - MTE-int LTR MaLR -1136 444 63 2 918 925 137 235 0 chr5 43688071 43688254 -108849005 - URR1A DNA MER1_type 0 226 1 2 918 227 368 47 52 chr5 43690393 43690565 -108846694 - MIR SINE MIR -77 185 15 2 918 3009 298 82 16 chr5 43690688 43691802 -108845457 - Lx7 LINE L1 -363 7333 6147 2 918 354 235 62 56 chr5 43691802 43691833 -108845426 + CYRA11_Mm Unknown Y-chromosome 144 175 -442 2 918 751 161 148 0 chr5 43691833 43691988 -108845271 - URR1A DNA MER1_type -2 224 47 2 918 219 103 0 0 chr5 43692870 43692909 -108844350 + (T)n Simple_repeat Simple_repeat 1 39 0 2 918 3883 42 0 9 chr5 43692932 43693383 -108843876 - L1Md_F2 LINE L1 0 6582 6136 2 918 255 103 0 0 chr5 43693503 43693542 -108843717 + (CAA)n Simple_repeat Simple_repeat 1 39 0 2 918 245 343 73 45 chr5 43694278 43694388 -108842871 - MER77 LTR ERVL -277 330 218 2 918 388 307 102 18 chr5 43694299 43694465 -108842794 - MER21B LTR ERV1 -556 307 128 2 918 897 282 80 4 chr5 43694808 43695071 -108842188 + B4A SINE B4 1 283 -9 2 918 23 33 0 0 chr5 43695226 43695256 -108842003 + AT_rich Low_complexity Low_complexity 1 30 0 2 918 242 282 0 53 chr5 43695340 43695415 -108841844 - ID4 SINE ID -4 79 9 2 918 236 222 0 0 chr5 43695846 43695891 -108841368 - Lx6 LINE L1 -633 6827 6783 2 918 3208 28 3 11 chr5 43695930 43696290 -108840969 - IAPEY2_LTR LTR ERVK 0 357 1 2 918 237 33 0 0 chr5 43697110 43697140 -108840119 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 918 184 330 9 83 chr5 43697583 43697692 -108839567 - MIRc SINE MIR -91 177 77 2 918 411 243 12 23 chr5 43697910 43698083 -108839176 + (CATATA)n Simple_repeat Simple_repeat 6 176 0 2 918 432 0 0 0 chr5 43698844 43698892 -108838367 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2 918 730 54 0 0 chr5 43698892 43698985 -108838274 - B1_Mm SINE Alu -13 134 42 2 918 226 198 112 56 chr5 43698922 43699029 -108838230 - RLTR25B LTR ERVK -519 509 397 2 918 397 103 0 33 chr5 43699115 43699175 -108838084 - B1_Mus2 SINE Alu -88 59 2 2 918 343 232 43 0 chr5 43699119 43699188 -108838071 - B4A SINE B4 -150 142 71 3 918 903 311 58 17 chr5 43699187 43699572 -108837687 - MLT2B2 LTR ERVL -65 497 1 3 918 190 296 0 53 chr5 43699596 43699653 -108837606 + MIRb SINE MIR 213 266 -2 3 918 455 335 89 0 chr5 43699673 43699864 -108837395 - MER97c DNA MER1_type? -652 438 231 3 918 1157 80 0 0 chr5 43699886 43700023 -108837236 - B1_Mus1 SINE Alu -10 138 2 3 918 398 217 25 11 chr5 43700343 43700443 -108836816 + ORR1D2 LTR MaLR 272 374 -5 3 918 245 299 0 0 chr5 43700662 43700729 -108836530 + (CCCTG)n Simple_repeat Simple_repeat 3 69 0 3 918 232 49 0 68 chr5 43700856 43700900 -108836359 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 918 197 333 141 34 chr5 43700971 43701120 -108836139 + MIRb SINE MIR 97 261 -7 3 918 1754 359 91 34 chr5 43701812 43702407 -108834852 - MTE-int LTR MaLR -357 1223 621 3 918 1291 224 75 45 chr5 43702407 43702766 -108834493 + ORR1D2 LTR MaLR 1 370 0 3 918 1754 359 91 34 chr5 43702766 43703166 -108834093 - MTE-int LTR MaLR -960 620 171 3 918 280 152 22 0 chr5 43703170 43703216 -108834043 + Lx6 LINE L1 6395 6441 -1019 3 918 532 199 95 7 chr5 43703216 43703353 -108833906 + MYSERV16_I-int LTR ERVK 2178 2326 0 3 918 1767 198 106 72 chr5 43703354 43703881 -108833378 + RLTR20B3 LTR ERVK 1 545 -32 3 918 1725 246 13 39 chr5 43703903 43703987 -108833272 + Lx6 LINE L1 6920 6998 -462 3 918 1202 55 7 20 chr5 43703987 43704136 -108833123 + B1_Mus2 SINE Alu 1 147 0 3 918 1065 78 0 0 chr5 43704139 43704305 -108832954 + (GA)n Simple_repeat Simple_repeat 2 167 0 3 918 1725 246 13 39 chr5 43704305 43704597 -108832662 + Lx6 LINE L1 6999 7290 -170 3 918 243 88 0 0 chr5 43704602 43704636 -108832623 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 3 918 432 341 18 18 chr5 43704644 43704811 -108832448 - MTE-int LTR MaLR -1400 180 14 3 918 33668 32 80 7 chr5 43704847 43710628 -108826631 - L1Md_A LINE L1 0 6582 384 3 918 367 244 9 1 chr5 43710628 43710734 -108826525 - MTEa LTR MaLR -2 377 273 3 918 2039 116 22 16 chr5 43710738 43711054 -108826205 + ORR1A3 LTR MaLR 1 318 -8 3 918 331 307 15 59 chr5 43711097 43711232 -108826027 - MTEa LTR MaLR -157 222 94 3 918 645 138 28 39 chr5 43712354 43712535 -108824724 + CT-rich Low_complexity Low_complexity 2 180 0 3 918 472 95 0 0 chr5 43712535 43712598 -108824661 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 918 9742 81 48 7 chr5 43713505 43713521 -108823738 - Lx3_Mus LINE L1 0 7009 6992 3 918 360 0 0 0 chr5 43713521 43713561 -108823698 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 3 918 9742 81 48 7 chr5 43713561 43714592 -108822667 - Lx3_Mus LINE L1 -18 6991 5924 3 918 474 18 0 0 chr5 43714592 43714647 -108822612 + (TTTTC)n Simple_repeat Simple_repeat 2 56 0 3 918 9742 80 9 0 chr5 43714647 43715108 -108822151 - Lx3_Mus LINE L1 -1086 5923 5447 3 918 1082 281 40 11 chr5 43715264 43715541 -108821718 - B4A SINE B4 -2 290 6 3 918 282 190 37 37 chr5 43715594 43715676 -108821583 - Lx7 LINE L1 0 7696 7615 3 918 215 260 0 25 chr5 43715721 43715800 -108821459 + A-rich Low_complexity Low_complexity 1 77 0 3 918 369 222 63 25 chr5 43715914 43716042 -108821217 + MLT1A1 LTR MaLR 300 460 -7 3 918 354 352 78 30 chr5 43716487 43716756 -108820503 - L1M5 LINE L1 -585 5539 5258 3 918 1216 280 101 45 chr5 43717098 43717409 -108819850 - MTD LTR MaLR 0 419 75 3 918 1229 69 102 23 chr5 43717409 43717586 -108819673 - B2_Mm2 SINE B2 -3 192 2 3 918 1216 280 101 45 chr5 43717586 43717671 -108819588 - MTD LTR MaLR -345 74 1 3 918 536 167 0 0 chr5 43717931 43718021 -108819238 - ORR1D2 LTR MaLR -12 358 269 3 918 23 0 0 0 chr5 43722370 43722393 -108814866 + AT_rich Low_complexity Low_complexity 1 23 0 3 918 507 206 11 0 chr5 43722399 43722491 -108814768 + Lx8 LINE L1 7252 7344 -129 3 918 3505 98 0 0 chr5 43722492 43722952 -108814307 - L1_Mus3 LINE L1 0 5883 5424 3 918 5403 84 35 1 chr5 43722952 43723688 -108813571 + L1_Mus3 LINE L1 5875 6635 -3 3 918 2474 77 61 0 chr5 43724233 43724559 -108812700 + ORR1A1 LTR MaLR 1 346 0 3 918 703 235 20 13 chr5 43724759 43724910 -108812349 + RSINE1 SINE B4 4 155 -10 3 918 268 254 171 8 chr5 43725055 43725178 -108812081 + Lx8 LINE L1 7316 7458 -15 3 918 456 19 0 0 chr5 43725179 43725232 -108812027 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 3 918 494 231 9 18 chr5 43725243 43725353 -108811906 + B1_Mur1 SINE Alu 40 148 -1 3 918 464 308 143 52 chr5 43726249 43726578 -108810681 - MLT1A1 LTR MaLR -13 395 37 3 918 789 98 80 36 chr5 43726982 43727119 -108810140 - B1_Mus1 SINE Alu 0 148 6 3 918 500 289 53 43 chr5 43727621 43727809 -108809450 + MLT1A0 LTR MaLR 10 199 -166 3 918 212 222 22 0 chr5 43727927 43727972 -108809287 + (TATG)n Simple_repeat Simple_repeat 3 48 0 3 918 670 240 14 0 chr5 43729129 43729275 -108807984 + B1_Mur4 SINE Alu 1 148 -2 3 918 984 273 59 28 chr5 43729290 43729614 -108807645 + Lx8 LINE L1 6811 7144 -329 3 918 363 286 55 24 chr5 43729616 43729781 -108807478 + Lx8 LINE L1 7302 7471 -2 3 918 180 282 14 27 chr5 43729906 43729979 -108807280 + MIR3 SINE MIR 112 183 -25 3 918 450 198 17 51 chr5 43731824 43731941 -108805318 - B4 SINE B4 -6 286 174 3 918 416 253 163 35 chr5 43732004 43732176 -108805083 + B3A SINE B2 1 194 -4 3 918 186 290 43 0 chr5 43733350 43733419 -108803840 - MIRc SINE MIR -114 154 83 3 918 2673 145 67 18 chr5 43733674 43734167 -108803092 - RLTR11A LTR ERVK -2 526 10 3 918 1019 107 0 0 chr5 43734276 43734416 -108802843 + B1_Mus1 SINE Alu 1 140 -8 3 918 204 40 0 0 chr5 43734440 43734465 -108802794 + (A)n Simple_repeat Simple_repeat 1 25 0 3 918 294 366 6 25 chr5 43734705 43734862 -108802397 + MIRb SINE MIR 44 197 -71 3 918 234 222 51 198 chr5 43735078 43735275 -108801984 + MTEb LTR MaLR 201 368 -11 3 918 1404 209 88 26 chr5 43735714 43736082 -108801177 + MTD LTR MaLR 12 405 -14 3 918 2293 116 39 8 chr5 43736212 43736568 -108800691 - IAPLTR1_Mm LTR ERVK 0 367 1 3 918 7355 24 9 7 chr5 43736570 43737418 -108799841 - IAPEz-int LTR ERVK -2 6479 5630 3 918 25426 30 36 4 chr5 43737404 43740380 -108796879 - IAPEz-int LTR ERVK -3405 3076 8 3 918 2293 116 39 8 chr5 43740380 43740736 -108796523 - IAPLTR1_Mm LTR ERVK 0 367 1 3 918 218 264 0 19 chr5 43740985 43741039 -108796220 + GA-rich Low_complexity Low_complexity 2 54 0 3 918 670 118 47 6 chr5 43741792 43741963 -108795296 + (CAGAGA)n Simple_repeat Simple_repeat 2 179 0 3 918 656 197 8 0 chr5 43742718 43742835 -108794424 + B1_Mur1 SINE Alu 17 134 -15 3 918 570 244 30 8 chr5 43742848 43742980 -108794279 - RSINE1 SINE B4 -29 136 2 3 918 237 33 0 0 chr5 43743176 43743206 -108794053 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 918 287 191 15 0 chr5 43743276 43743344 -108793915 + (CATA)n Simple_repeat Simple_repeat 4 72 0 3 918 591 40 0 0 chr5 43745490 43745564 -108791695 + (GA)n Simple_repeat Simple_repeat 1 74 0 3 918 513 0 0 0 chr5 43745564 43745621 -108791638 + (GAA)n Simple_repeat Simple_repeat 3 59 0 3 918 859 263 73 23 chr5 43746912 43747212 -108790047 - MTEb LTR MaLR -2 377 63 3 918 357 82 0 0 chr5 43747214 43747263 -108789996 + (CACG)n Simple_repeat Simple_repeat 1 49 0 3 918 236 143 0 0 chr5 43747271 43747313 -108789946 - MTEb LTR MaLR -332 47 6 3 918 263 263 74 0 chr5 43748834 43748929 -108788330 + L2 LINE L2 2658 2759 -660 3 918 245 167 19 0 chr5 43750498 43750552 -108786707 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 918 253 273 0 0 chr5 43751534 43751589 -108785670 + GA-rich Low_complexity Low_complexity 1 55 0 3 918 186 118 0 0 chr5 43751604 43751638 -108785621 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 3 918 192 40 0 0 chr5 43752124 43752149 -108785110 + (C)n Simple_repeat Simple_repeat 1 25 0 3 918 423 0 0 0 chr5 43752603 43752650 -108784609 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 918 205 333 112 16 chr5 43753149 43753274 -108783985 - L2a LINE L2 -17 3409 3273 3 918 671 88 0 29 chr5 43753595 43753700 -108783559 + B2_Mm2 SINE B2 1 102 -93 3 918 398 281 10 0 chr5 43753811 43753907 -108783352 - MLT2B3 LTR ERVL -457 97 1 3 918 402 293 67 79 chr5 43753907 43754163 -108783096 + MLT1B LTR MaLR 114 366 -24 3 918 351 316 22 18 chr5 43754477 43754699 -108782560 - L1MC4 LINE L1 -3837 2378 2156 3 918 543 272 47 33 chr5 43754930 43755143 -108782116 + B4A SINE B4 1 216 -76 3 918 420 316 99 12 chr5 43755186 43755439 -108781820 - L1MDa LINE L1 -6240 393 119 3 918 345 305 39 7 chr5 43755663 43755818 -108781441 - L1MC4 LINE L1 -4652 1563 1404 3 918 618 267 265 7 chr5 43755918 43756212 -108781047 + MTE2b LTR MaLR 8 377 -2 3 918 255 309 70 25 chr5 43756230 43756429 -108780830 - L1MC4 LINE L1 -4953 1262 1055 3 918 396 0 0 0 chr5 43756530 43756574 -108780685 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 918 282 257 13 13 chr5 43758146 43758221 -108779038 + ID4_ SINE ID 3 77 -6 3 918 206 230 53 24 chr5 43758251 43758420 -108778839 + (TA)n Simple_repeat Simple_repeat 2 175 0 3 918 191 376 107 0 chr5 43759138 43759287 -108777972 - L2b LINE L2 -26 3349 3185 3 918 554 105 12 0 chr5 43759417 43759503 -108777756 - B1_Mus2 SINE Alu 0 147 61 3 918 7968 83 12 1 chr5 43760293 43762072 -108775187 - L1_Mus1 LINE L1 0 6567 4762 3 918 281 259 0 34 chr5 43762320 43762408 -108774851 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 918 236 278 211 93 chr5 43762422 43762668 -108774591 - B4 SINE B4 -13 279 5 3 918 432 0 0 0 chr5 43762903 43762951 -108774308 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 918 638 233 0 8 chr5 43763248 43763378 -108773881 + B1_Mur3 SINE Alu 20 148 -1 3 918 521 225 131 8 chr5 43764218 43764348 -108772911 + B1_Mur1 SINE Alu 3 148 -1 3 918 559 316 73 39 chr5 43764945 43765353 -108771906 - Charlie4a DNA MER1_type -63 445 24 3 918 576 319 95 4 chr5 43765568 43765842 -108771417 - MLT1B LTR MaLR -91 299 1 3 918 330 245 68 10 chr5 43766159 43766262 -108770997 - PB1D7 SINE Alu -1 119 11 3 918 209 163 0 20 chr5 43767259 43767309 -108769950 + CT-rich Low_complexity Low_complexity 1 49 0 3 918 2247 130 120 25 chr5 43767427 43767861 -108769398 + IAPLTR2_Mm LTR ERVK 1 475 0 3 918 279 0 0 0 chr5 43768045 43768076 -108769183 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 3 918 494 352 58 36 chr5 43768076 43768350 -108768909 - B4A SINE B4 0 292 13 3 918 227 143 24 0 chr5 43768524 43768566 -108768693 + MLT1J2 LTR MaLR 389 431 -17 3 918 206 193 0 17 chr5 43769368 43769426 -108767833 + CT-rich Low_complexity Low_complexity 1 57 0 3 918 192 217 0 0 chr5 43769498 43769544 -108767715 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 918 405 0 0 0 chr5 43769740 43769785 -108767474 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 918 528 16 0 0 chr5 43769785 43769845 -108767414 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 918 273 323 21 63 chr5 43770088 43770230 -108767029 + MLT1J1 LTR MaLR 26 162 -286 4 918 429 282 8 33 chr5 43770524 43770645 -108766614 + ID_B1 SINE B4 93 210 -14 4 918 22 0 0 0 chr5 43771798 43771820 -108765439 + AT_rich Low_complexity Low_complexity 1 22 0 4 918 1956 129 3 80 chr5 43772352 43772714 -108764545 + ORR1B1 LTR MaLR 53 386 -8 4 918 529 161 0 35 chr5 43773843 43773959 -108763300 - L1Md_F2 LINE L1 0 6582 6471 4 918 232 208 37 19 chr5 43774024 43774078 -108763181 - RSINE1 SINE B4 -66 99 45 4 918 2404 66 0 19 chr5 43774078 43774388 -108762871 - L1_Mus1 LINE L1 -88 6479 6176 4 918 225 0 0 0 chr5 43774493 43774518 -108762741 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 918 354 108 0 0 chr5 43774520 43774585 -108762674 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 4 918 259 247 24 36 chr5 43774742 43774826 -108762433 + L1ME2z LINE L1 6222 6304 -140 4 918 251 284 20 40 chr5 43775304 43775403 -108761856 - MTEa LTR MaLR -4 375 279 4 918 320 313 25 57 chr5 43776367 43776526 -108760733 + ORR1D2 LTR MaLR 27 180 -190 4 918 1380 70 11 11 chr5 43777012 43777200 -108760059 - B2_Mm1t SINE B2 -5 188 1 4 918 21 57 0 0 chr5 43777991 43778026 -108759233 + AT_rich Low_complexity Low_complexity 1 35 0 4 919 316 295 11 11 chr5 43778210 43778299 -108758960 - RMER20B LTR ERVK -14 613 525 4 919 1753 228 183 8 chr5 43778392 43778901 -108758358 - RMER20B LTR ERVK -29 598 1 4 919 1020 246 20 68 chr5 43778938 43779231 -108758028 - B4 SINE B4 -13 279 1 4 919 391 260 13 0 chr5 43779272 43779422 -108757837 + (TATATG)n Simple_repeat Simple_repeat 3 154 0 4 919 243 0 0 0 chr5 43779423 43779450 -108757809 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 919 298 161 0 75 chr5 43779586 43779653 -108757606 + ORR1C2 LTR MaLR 101 162 -222 4 919 2759 147 92 18 chr5 43779655 43780146 -108757113 + Lx4A LINE L1 6518 7044 -14 4 919 306 0 0 0 chr5 43780146 43780180 -108757079 + (TAA)n Simple_repeat Simple_repeat 2 35 0 4 919 635 94 25 17 chr5 43780197 43780316 -108756943 + (TCTCCC)n Simple_repeat Simple_repeat 5 124 0 4 919 780 198 148 6 chr5 43780323 43780506 -108756753 + ORR1C2 LTR MaLR 175 383 -1 4 919 1127 34 14 7 chr5 43780680 43780827 -108756432 - L1Md_F3 LINE L1 0 6584 6437 4 919 468 344 119 22 chr5 43780857 43781125 -108756134 + LTR16B LTR ERVL 170 463 0 4 919 226 247 10 58 chr5 43781562 43781660 -108755599 + MIRc SINE MIR 66 162 -106 4 919 4887 57 5 5 chr5 43781708 43782291 -108754968 + L1Md_F2 LINE L1 6000 6582 0 4 919 226 303 11 11 chr5 43782665 43782755 -108754504 - Charlie24 DNA MER1_type -5 2445 2356 4 919 468 0 0 0 chr5 43782816 43782868 -108754391 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 919 486 0 0 0 chr5 43783551 43783605 -108753654 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 919 266 125 36 0 chr5 43783611 43783667 -108753592 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 4 919 233 342 131 6 chr5 43784854 43784987 -108752272 + MIR3 SINE MIR 22 168 -40 4 919 1030 202 16 5 chr5 43785169 43785363 -108751896 + B3 SINE B2 16 211 -5 4 919 2541 57 0 3 chr5 43785560 43785859 -108751400 - L1_Mus1 LINE L1 -1 6566 6269 4 919 1096 282 26 0 chr5 43785938 43786204 -108751055 + B4A SINE B4 4 276 -16 4 919 322 302 9 19 chr5 43786310 43786418 -108750841 + L1ME3A LINE L1 5505 5611 -629 4 919 781 300 38 4 chr5 43786465 43786726 -108750533 + Tigger5 DNA MER2_type 2137 2406 0 4 919 1095 278 80 26 chr5 43786747 43787246 -108750013 + L1ME3A LINE L1 5626 6151 -22 4 919 472 314 44 6 chr5 43788213 43788373 -108748886 + MER58A DNA MER1_type 5 170 -54 4 919 771 229 72 128 chr5 43790805 43791125 -108746134 + MTEb LTR MaLR 65 366 -13 4 919 1676 193 52 9 chr5 43791665 43792319 -108744940 + L1_Mur3 LINE L1 863 1551 -4326 4 919 828 221 98 39 chr5 43792511 43792714 -108744545 - B3 SINE B2 0 216 2 4 919 447 311 153 32 chr5 43794144 43794482 -108742777 - MLT1A1 LTR MaLR 0 365 1 4 919 876 260 77 5 chr5 43794521 43794730 -108742529 + ID_B1 SINE B4 1 224 0 4 919 224 317 0 0 chr5 43794733 43794793 -108742466 + GA-rich Low_complexity Low_complexity 1 60 0 4 919 269 26 26 0 chr5 43794931 43794969 -108742290 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 4 919 255 270 79 10 chr5 43795129 43795230 -108742029 + Kanga2_a DNA Tc2 32 139 -749 4 919 378 283 125 38 chr5 43795391 43795655 -108741604 + L1_Mur3 LINE L1 1996 2282 -3598 4 919 348 307 98 40 chr5 43795825 43796100 -108741159 + Kanga2_a DNA Tc2 566 856 -32 4 919 437 329 94 64 chr5 43796288 43796723 -108740536 - Lx8 LINE L1 -11 7462 7015 4 919 351 0 0 0 chr5 43796740 43796779 -108740480 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 919 270 0 0 0 chr5 43796939 43796969 -108740290 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 919 180 0 0 0 chr5 43797020 43797040 -108740219 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 919 1607 216 38 26 chr5 43797078 43797425 -108739834 + Lx5 LINE L1 6576 6926 -124 4 919 180 77 0 0 chr5 43797641 43797667 -108739592 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 919 201 243 0 0 chr5 43797675 43797712 -108739547 + (CACG)n Simple_repeat Simple_repeat 3 39 0 4 919 1809 274 39 17 chr5 43797715 43798235 -108739024 - Lx7 LINE L1 -402 7294 6764 4 919 314 260 13 27 chr5 43798325 43798400 -108738859 + B4A SINE B4 127 200 -92 4 919 243 88 0 0 chr5 43798473 43798507 -108738752 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 919 30 27 0 0 chr5 43798908 43798945 -108738314 + AT_rich Low_complexity Low_complexity 1 37 0 4 919 6096 59 1 0 chr5 43798945 43799659 -108737600 - L1_Mus1 LINE L1 -1 6566 5852 4 919 6013 39 1 0 chr5 43799987 43800661 -108736598 - L1Md_T LINE L1 0 6582 5908 4 919 33914 38 0 1 chr5 43800661 43805197 -108732062 - L1Md_Gf LINE L1 -580 5306 677 4 919 666 149 9 0 chr5 43805239 43805346 -108731913 - B2_Mm1t SINE B2 -4 189 82 4 919 2311 301 40 19 chr5 43805533 43806236 -108731023 - Lx7 LINE L1 -912 6784 6067 4 919 309 291 104 64 chr5 43806399 43806649 -108730610 + L1MA9 LINE L1 5819 6078 -234 4 919 462 262 8 0 chr5 43806659 43806785 -108730474 + L1MA9 LINE L1 6186 6312 0 4 919 218 57 0 54 chr5 43807015 43807052 -108730207 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 4 919 414 39 0 0 chr5 43807170 43807222 -108730037 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 919 252 0 0 0 chr5 43807977 43808005 -108729254 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 919 433 327 10 0 chr5 43808534 43808638 -108728621 + ID_B1 SINE B4 113 217 -7 4 919 3966 149 7 8 chr5 43808641 43809257 -108728002 + Lx LINE L1 6038 6652 -2 4 919 5797 91 15 6 chr5 43809292 43810751 -108726508 + L1VL4 LINE L1 212 1689 -1870 4 919 7170 95 39 2 chr5 43810748 43811948 -108725311 + L1_Mus4 LINE L1 5388 6629 -7 4 919 267 103 0 0 chr5 43811958 43811997 -108725262 + (A)n Simple_repeat Simple_repeat 1 39 0 4 919 282 123 0 0 chr5 43812012 43812069 -108725190 + (T)n Simple_repeat Simple_repeat 1 57 0 4 919 325 280 40 48 chr5 43812342 43812466 -108724793 + MIRb SINE MIR 26 148 -120 4 919 251 330 0 43 chr5 43812628 43812720 -108724539 + PB1D7 SINE Alu 24 111 -9 4 919 326 265 45 73 chr5 43812687 43812797 -108724462 + B4A SINE B4 186 292 0 4 919 400 189 72 116 chr5 43812830 43812937 -108724322 - MLT1A0 LTR MaLR -233 132 22 4 919 2210 108 69 0 chr5 43812937 43813243 -108724016 - ORR1A2 LTR MaLR 0 327 1 4 919 400 189 72 116 chr5 43813243 43813273 -108723986 - MLT1A0 LTR MaLR -344 21 1 4 919 390 296 0 57 chr5 43813792 43813914 -108723345 - B4A SINE B4 -162 130 16 4 919 203 73 73 0 chr5 43815066 43815121 -108722138 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 4 919 250 337 10 0 chr5 43815653 43815751 -108721508 - MIR SINE MIR -101 161 63 4 919 1203 176 85 37 chr5 43816630 43816717 -108720542 - RLTR20C LTR ERVK 0 534 446 4 919 529 40 26 0 chr5 43816717 43816793 -108720466 + (CA)n Simple_repeat Simple_repeat 2 79 0 4 919 1203 160 262 21 chr5 43816793 43817074 -108720185 - RLTR20C LTR ERVK -89 445 1 4 919 187 322 55 44 chr5 43817205 43817296 -108719963 + L2b LINE L2 3071 3162 -213 4 919 1000 50 0 0 chr5 43817298 43817419 -108719840 - RLTR10B LTR ERVK 0 292 172 4 919 189 0 0 0 chr5 43817419 43817440 -108719819 + (T)n Simple_repeat Simple_repeat 1 21 0 4 919 41411 13 1 6 chr5 43817473 43823647 -108713612 - L1Md_A LINE L1 0 6582 448 4 919 2134 42 5 11 chr5 43823647 43824060 -108713199 - RLTR10C LTR ERVK -96 340 1 4 919 225 0 0 0 chr5 43824211 43824236 -108713023 + (T)n Simple_repeat Simple_repeat 1 25 0 4 919 1803 52 0 0 chr5 43825194 43825406 -108711853 - L1_Mus1 LINE L1 -381 6186 5975 4 919 3530 54 2 0 chr5 43825407 43825814 -108711445 + L1_Mus1 LINE L1 6160 6567 0 4 919 2817 33 9 0 chr5 43826021 43826354 -108710905 - L1Md_F3 LINE L1 -407 6177 5842 4 919 2469 28 17 3 chr5 43826354 43826642 -108710617 + L1Md_F3 LINE L1 6290 6581 -3 4 919 655 343 93 66 chr5 43827206 43827721 -108709538 + MER21B LTR ERV1 131 659 -204 4 919 290 284 24 12 chr5 43827928 43828010 -108709249 + RCHARR1 DNA MER1_type 892 974 0 4 919 187 311 100 36 chr5 43828566 43828676 -108708583 - L2b LINE L2 -3 3372 3256 4 919 663 266 160 17 chr5 43829437 43829731 -108707528 - RCHARR1 DNA MER1_type -1 973 638 4 919 710 277 39 22 chr5 43829731 43829960 -108707299 + Lx8 LINE L1 6635 6867 -606 4 919 236 216 39 0 chr5 43831598 43831649 -108705610 + L1MC LINE L1 5858 5910 -1972 4 919 198 0 0 0 chr5 43831652 43831674 -108705585 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 919 209 218 36 18 chr5 43832860 43832916 -108704343 + GA-rich Low_complexity Low_complexity 1 57 0 5 919 1815 61 89 0 chr5 43833464 43833711 -108703548 - L1_Mus3 LINE L1 0 6638 6370 5 919 189 0 0 0 chr5 43834709 43834730 -108702529 + (A)n Simple_repeat Simple_repeat 1 21 0 5 919 716 301 37 29 chr5 43835077 43835280 -108701979 - MTD LTR MaLR -171 248 40 5 919 1264 179 32 0 chr5 43835280 43835498 -108701761 - URR1B DNA MER1_type 0 225 1 5 919 716 301 37 29 chr5 43835498 43835540 -108701719 - MTD LTR MaLR -380 39 1 5 919 282 213 49 0 chr5 43836195 43836256 -108701003 + MIRm SINE MIR 200 263 -13 5 919 21 0 0 0 chr5 43836947 43836968 -108700291 + AT_rich Low_complexity Low_complexity 1 21 0 5 919 1129 204 21 29 chr5 43837099 43837337 -108699922 - ORR1D1 LTR MaLR 0 374 139 5 919 359 163 127 49 chr5 43837337 43837460 -108699799 - Lx7 LINE L1 -11 7685 7557 5 919 960 55 0 0 chr5 43837460 43837587 -108699672 + (TAGA)n Simple_repeat Simple_repeat 2 128 0 5 919 359 163 127 49 chr5 43837587 43837605 -108699654 - Lx7 LINE L1 -140 7556 7534 5 919 15703 162 59 35 chr5 43838065 43839173 -108698086 + Lx5 LINE L1 834 2060 -3817 5 919 399 41 0 0 chr5 43839173 43839222 -108698037 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 919 15703 150 64 33 chr5 43839222 43841513 -108695746 + Lx5 LINE L1 2061 4335 -1542 5 919 2757 128 35 0 chr5 43841516 43841939 -108695320 + RMER19A LTR ERVK 1 438 -299 5 919 216 67 0 0 chr5 43841983 43842013 -108695246 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 919 1566 255 39 22 chr5 43842044 43842517 -108694742 + RLTR20B3 LTR ERVK 92 548 -15 5 919 1899 84 75 20 chr5 43842529 43842821 -108694438 + RMER19A LTR ERVK 430 737 0 5 919 9456 139 20 9 chr5 43842823 43843089 -108694170 + Lx5 LINE L1 4345 4617 -1260 5 919 459 0 0 0 chr5 43843089 43843140 -108694119 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 5 919 9456 159 34 21 chr5 43843140 43845541 -108691718 + Lx5 LINE L1 4618 7050 0 5 919 214 173 19 37 chr5 43845572 43845626 -108691633 + A-rich Low_complexity Low_complexity 2 54 0 5 919 213 108 0 0 chr5 43845648 43845685 -108691574 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 919 4349 160 70 8 chr5 43845686 43846448 -108690811 - Lx7 LINE L1 -273 7423 6615 5 919 592 173 228 0 chr5 43846448 43846575 -108690684 - ORR1D1 LTR MaLR -218 156 1 5 919 206 339 0 0 chr5 43846721 43846783 -108690476 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 919 352 37 37 0 chr5 43847949 43848003 -108689256 + (TTTTTG)n Simple_repeat Simple_repeat 2 57 0 5 919 193 28 53 53 chr5 43848777 43848815 -108688444 + (TCTCTG)n Simple_repeat Simple_repeat 5 42 0 5 919 564 15 0 0 chr5 43848815 43848879 -108688380 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 919 208 357 50 43 chr5 43849538 43849699 -108687560 - MIRm SINE MIR -82 194 33 5 919 22 0 0 0 chr5 43850114 43850136 -108687123 + AT_rich Low_complexity Low_complexity 1 22 0 5 919 660 278 286 11 chr5 43850275 43850555 -108686704 - ORR1E LTR MaLR -2 357 1 5 919 919 89 149 7 chr5 43851043 43851197 -108686062 - L1_Mus1 LINE L1 0 6636 6398 5 919 295 0 0 0 chr5 43851186 43851218 -108686041 + L1_Mus2 LINE L1 6188 6219 -347 5 919 3461 185 120 10 chr5 43851407 43852173 -108685086 + RLTR25B LTR ERVK 5 854 -174 5 919 504 0 0 0 chr5 43852338 43852394 -108684865 + (TTA)n Simple_repeat Simple_repeat 2 57 0 5 919 613 225 100 132 chr5 43852523 43852682 -108684577 + RLTR25B LTR ERVK 758 893 -135 5 919 555 62 0 0 chr5 43852682 43852762 -108684497 + (GA)n Simple_repeat Simple_repeat 1 80 0 5 919 613 225 100 132 chr5 43852762 43852853 -108684406 + RLTR25B LTR ERVK 894 1000 -28 5 919 741 283 102 30 chr5 43852909 43853244 -108684015 + MER82 DNA MER2_type 4 362 -291 5 919 624 238 114 40 chr5 43853255 43853456 -108683803 - B3 SINE B2 0 216 1 5 919 401 175 87 10 chr5 43853528 43853632 -108683627 + Lx5 LINE L1 6939 7050 0 5 919 663 13 0 0 chr5 43854268 43854344 -108682915 + (TTTTG)n Simple_repeat Simple_repeat 2 77 0 5 919 669 220 45 0 chr5 43854466 43854598 -108682661 + B3A SINE B2 1 138 -60 5 919 635 228 97 76 chr5 43854963 43855148 -108682111 + B4A SINE B4 102 290 -2 5 919 201 327 21 29 chr5 43855170 43855260 -108681999 - MIRm SINE MIR -177 99 2 5 919 441 274 104 19 chr5 43855871 43855958 -108681301 + Lx9 LINE L1 6113 6206 -1267 5 919 449 34 0 17 chr5 43855958 43856018 -108681241 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 919 501 262 42 0 chr5 43856018 43856142 -108681117 + Lx9 LINE L1 6358 6484 -1160 5 919 253 167 132 53 chr5 43856214 43856328 -108680931 + Lx9 LINE L1 7521 7643 -1 5 919 520 249 136 23 chr5 43856980 43857157 -108680102 + B3A SINE B2 2 198 0 5 919 2072 107 57 42 chr5 43857492 43857825 -108679434 + Lx3B LINE L1 6636 6973 0 5 919 219 88 0 0 chr5 43858427 43858461 -108678798 + (CTTA)n Simple_repeat Simple_repeat 3 36 0 5 919 379 286 60 60 chr5 43859234 43859383 -108677876 - LTR52 LTR ERVL -262 159 11 5 919 1465 138 32 0 chr5 43859458 43859676 -108677583 + URR1B DNA MER1_type 1 225 0 5 919 297 0 0 0 chr5 43860901 43860934 -108676325 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 919 239 292 20 40 chr5 43861375 43861475 -108675784 - MIRc SINE MIR -71 197 100 5 919 281 309 103 54 chr5 43862745 43862930 -108674329 + ORR1D2 LTR MaLR 61 254 -116 5 919 182 348 87 24 chr5 43863436 43863642 -108673617 + MIR SINE MIR 41 259 -3 5 919 236 297 31 0 chr5 43865158 43865222 -108672037 - RMER15 LTR ERVL -116 459 394 5 919 239 279 41 110 chr5 43865453 43865598 -108671661 - MLT1I LTR MaLR -1 410 276 5 919 231 36 0 0 chr5 43866196 43866224 -108671035 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 919 243 324 140 7 chr5 43866495 43866638 -108670621 - MIRb SINE MIR -26 242 81 5 919 339 321 97 32 chr5 43867303 43867519 -108669740 + MLT1D LTR MaLR 262 491 -14 5 919 235 291 0 0 chr5 43867774 43867829 -108669430 + MER5A DNA MER1_type 126 180 -9 5 919 418 220 26 6 chr5 43868756 43868862 -108668397 - B3A SINE B2 -27 189 79 5 919 2176 252 127 11 chr5 43868948 43869611 -108667648 - RCHARR1 DNA MER1_type -234 740 1 5 919 190 312 91 0 chr5 43869721 43869798 -108667461 - MIRb SINE MIR -165 103 20 5 919 294 328 84 27 chr5 43870201 43870339 -108666920 + MLT1A0 LTR MaLR 211 371 -37 5 919 1758 189 61 3 chr5 43871306 43871650 -108665609 + MTEb LTR MaLR 15 378 -1 5 919 250 325 31 55 chr5 43871911 43871957 -108665302 + MIR SINE MIR 106 151 -111 5 919 2369 186 10 17 chr5 43871957 43872367 -108664892 - MTB_Mm LTR MaLR 0 407 1 5 919 250 327 30 72 chr5 43872367 43872474 -108664785 + MIR SINE MIR 152 251 -17 5 919 360 0 0 0 chr5 43872782 43872822 -108664437 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5 919 221 220 20 0 chr5 43872891 43872941 -108664318 + (TTA)n Simple_repeat Simple_repeat 3 53 0 5 919 371 288 99 58 chr5 43874298 43874641 -108662618 - L1MB3 LINE L1 -3 6180 5824 5 919 332 43 22 0 chr5 43874692 43874738 -108662521 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 919 238 271 61 70 chr5 43874739 43874854 -108662405 - MER53 DNA hAT -55 138 25 5 919 32819 82 11 4 chr5 43875159 43880327 -108656932 + L1Md_F2 LINE L1 380 5585 -298 5 919 7831 84 8 3 chr5 43880328 43881319 -108655940 + L1Md_F2 LINE L1 5587 6582 0 5 919 294 228 0 0 chr5 43881753 43881810 -108655449 + L2a LINE L2 3351 3407 -19 5 919 5055 38 2 0 chr5 43882449 43883063 -108654196 - RLTR13B4 LTR ERVK 0 803 189 5 919 38906 52 5 9 chr5 43883063 43889354 -108647905 - L1Md_T LINE L1 -2 6580 307 5 919 1350 90 15 0 chr5 43889355 43889556 -108647703 - RLTR13B4 LTR ERVK -599 204 1 5 919 379 235 257 29 chr5 43890416 43890587 -108646672 + B3 SINE B2 1 210 -6 5 919 680 349 26 0 chr5 43890617 43890881 -108646378 + B4A SINE B4 8 278 -14 5 919 651 322 24 70 chr5 43891234 43891521 -108645738 + B4A SINE B4 1 274 -18 5 919 414 0 0 0 chr5 43891538 43891584 -108645675 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 919 518 329 76 60 chr5 43891765 43892147 -108645112 - MLT2C1 LTR ERVL -5 392 5 5 919 312 83 0 0 chr5 43892289 43892337 -108644922 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 919 204 392 14 0 chr5 43892789 43892863 -108644396 + MER5A DNA MER1_type 12 86 -103 5 919 1385 251 28 31 chr5 43893496 43893849 -108643410 - MTE2b LTR MaLR -26 353 2 5 919 2219 268 36 25 chr5 43894021 43894648 -108642611 - Lx5 LINE L1 0 7050 6455 5 919 1787 135 12 63 chr5 43896443 43896775 -108640484 - ORR1A4 LTR MaLR -5 324 10 5 919 3646 211 91 49 chr5 43896793 43897884 -108639375 + RMER12 LTR ERVK 1 1137 -185 5 919 538 311 28 22 chr5 43898076 43898257 -108639002 + RMER12 LTR ERVK 1141 1322 0 5 919 312 300 112 43 chr5 43898353 43898704 -108638555 - L1ME1 LINE L1 -101 6078 5705 5 919 561 30 0 0 chr5 43898704 43898771 -108638488 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 5 919 312 300 112 43 chr5 43898771 43898813 -108638446 - L1ME1 LINE L1 -475 5704 5658 5 919 422 302 40 13 chr5 43898909 43899060 -108638199 - MLT1A LTR MaLR -214 160 6 5 919 326 191 130 28 chr5 43901146 43901254 -108636005 + ORR1E LTR MaLR 7 125 -234 5 919 497 317 81 0 chr5 43904090 43904269 -108632990 + MIR SINE MIR 35 226 -42 5 919 238 188 91 127 chr5 43904358 43904468 -108632791 + L1MA10 LINE L1 6180 6285 -49 5 919 228 130 0 0 chr5 43904574 43904620 -108632639 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 919 234 372 83 21 chr5 43905111 43905438 -108631821 - MLT1J-int LTR MaLR -1040 347 1 5 919 22 56 0 0 chr5 43906274 43906310 -108630949 + AT_rich Low_complexity Low_complexity 1 36 0 5 919 216 0 0 0 chr5 43906348 43906372 -108630887 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 919 189 0 0 0 chr5 43907765 43907786 -108629473 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 920 206 323 0 15 chr5 43909865 43909931 -108627328 + MIR SINE MIR 120 184 -78 5 920 296 258 0 20 chr5 43911646 43911745 -108625514 - MamGypLTR1b LTR Gypsy -13 769 673 5 920 1247 203 63 63 chr5 43912088 43912246 -108625013 - Lx9 LINE L1 -2 7642 7487 5 920 1365 62 28 0 chr5 43912246 43912425 -108624834 - B2_Mm1t SINE B2 -8 185 2 5 920 1247 203 63 63 chr5 43912425 43912661 -108624598 - Lx9 LINE L1 -158 7486 7248 5 920 264 306 0 0 chr5 43913036 43913098 -108624161 + (TATG)n Simple_repeat Simple_repeat 4 65 0 5 920 799 275 50 80 chr5 43913101 43913401 -108623858 - B4 SINE B4 0 292 2 6 920 632 225 161 11 chr5 43913564 43913744 -108623515 - B3 SINE B2 0 216 10 6 920 305 213 120 0 chr5 43914596 43914671 -108622588 + MLT1A1 LTR MaLR 316 399 -9 6 920 468 0 0 0 chr5 43915284 43915336 -108621923 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 920 1443 258 11 17 chr5 43915409 43915771 -108621488 - MTE2b LTR MaLR -7 372 13 6 920 201 74 0 0 chr5 43915862 43915889 -108621370 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 6 920 843 332 36 36 chr5 43916669 43917088 -108620171 + MER44B DNA MER2_type 14 432 -118 6 920 221 230 14 0 chr5 43917487 43917561 -108619698 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 920 369 0 0 0 chr5 43918301 43918342 -108618917 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 920 231 310 69 26 chr5 43918479 43918595 -108618664 - L4 LINE RTE -108 1921 1801 6 920 188 228 18 0 chr5 43920070 43920127 -108617132 + CT-rich Low_complexity Low_complexity 2 59 0 6 920 347 294 41 41 chr5 43920378 43920548 -108616711 + MER5B DNA MER1_type 9 178 0 6 920 226 302 89 99 chr5 43921029 43921231 -108616028 - MIRb SINE MIR -44 224 25 6 920 183 222 22 22 chr5 43923837 43923883 -108613376 + MIR SINE MIR 56 101 -161 6 920 312 27 0 0 chr5 43924764 43924801 -108612458 + (GGA)n Simple_repeat Simple_repeat 3 39 0 6 920 655 302 64 46 chr5 43925207 43925533 -108611726 + MER82 DNA MER2_type 1 332 -321 6 920 257 167 0 48 chr5 43925572 43925635 -108611624 - B3 SINE B2 0 216 157 6 920 331 289 43 26 chr5 43925689 43925806 -108611453 - B1F SINE Alu -19 130 12 6 920 643 294 6 11 chr5 43925717 43925896 -108611363 - ID_B1 SINE B4 -45 179 2 6 920 539 29 0 14 chr5 43925946 43926016 -108611243 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 920 813 286 69 38 chr5 43926159 43926552 -108610707 - L1MA5 LINE L1 -51 6249 5845 6 920 344 346 73 13 chr5 43926552 43926786 -108610473 - L3 LINE CR1 -219 4270 4023 6 920 1048 44 7 0 chr5 43926908 43927043 -108610216 - L1_Mus1 LINE L1 -1 6566 6431 6 920 345 280 0 0 chr5 43927107 43927179 -108610080 + RSINE1 SINE B4 65 136 -29 6 920 2172 77 6 87 chr5 43927179 43927250 -108610009 - ORR1A2 LTR MaLR 0 327 270 6 920 1499 81 0 0 chr5 43927250 43927447 -108609812 - L1_Mus1 LINE L1 0 6567 6371 6 920 2172 77 6 87 chr5 43927447 43927731 -108609528 - ORR1A2 LTR MaLR -58 269 1 6 920 185 178 22 0 chr5 43927766 43927811 -108609448 + (CATA)n Simple_repeat Simple_repeat 4 49 0 6 920 273 57 0 0 chr5 43927816 43927851 -108609408 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 6 920 279 0 0 0 chr5 43928197 43928228 -108609031 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 920 245 307 36 73 chr5 43928424 43928561 -108608698 - ORR1E LTR MaLR -224 135 4 6 920 658 304 21 38 chr5 43928862 43929149 -108608110 + B4A SINE B4 1 282 -10 6 920 387 105 0 0 chr5 43929156 43929213 -108608046 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 920 184 421 15 22 chr5 43930770 43930906 -108606353 - MIR SINE MIR -106 156 22 6 920 432 0 0 0 chr5 43931138 43931186 -108606073 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 920 476 310 88 59 chr5 43931495 43931834 -108605425 - MLT1A0 LTR MaLR 0 365 17 6 920 574 25 12 25 chr5 43932638 43932719 -108604540 + (GAAAA)n Simple_repeat Simple_repeat 1 80 0 6 920 375 23 0 0 chr5 43933004 43933048 -108604211 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 920 770 70 9 0 chr5 43933060 43933174 -108604085 + (TG)n Simple_repeat Simple_repeat 2 116 0 6 920 273 224 0 94 chr5 43933176 43933240 -108604019 - ID4 SINE ID -11 72 15 6 920 421 274 0 9 chr5 43933296 43933403 -108603856 - PB1D10 SINE Alu -8 109 4 6 920 180 317 88 40 chr5 43934084 43934209 -108603050 + MIRc SINE MIR 31 161 -107 6 920 365 284 112 0 chr5 43934319 43934435 -108602824 - MLT1K LTR MaLR -2 593 465 6 920 343 208 14 27 chr5 43934829 43934903 -108602356 + MER81 DNA AcHobo 23 95 -19 6 920 726 12 0 0 chr5 43934919 43935002 -108602257 + (TTC)n Simple_repeat Simple_repeat 2 84 0 6 920 485 238 0 10 chr5 43935550 43935652 -108601607 + RSINE1 SINE B4 2 102 -63 6 920 261 0 0 0 chr5 43935694 43935723 -108601536 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 920 21 57 0 0 chr5 43936901 43936936 -108600323 + AT_rich Low_complexity Low_complexity 1 35 0 6 920 341 238 17 29 chr5 43938209 43938383 -108598876 + GA-rich Low_complexity Low_complexity 1 171 0 6 920 488 282 119 68 chr5 43940024 43940291 -108596968 - MLT1A1 LTR MaLR 0 408 87 6 920 917 196 136 0 chr5 43943191 43943390 -108593869 - URR1A DNA MER1_type 0 226 1 6 920 255 342 18 9 chr5 43943448 43943560 -108593699 - MIRc SINE MIR -135 133 21 6 920 1486 38 49 0 chr5 43943962 43944145 -108593114 + B2_Mm2 SINE B2 1 192 -3 6 920 1097 197 39 0 chr5 43944345 43944553 -108592706 + B3 SINE B2 1 216 0 6 920 285 298 79 47 chr5 43944980 43945031 -108592228 - L2a LINE L2 -10 3416 3368 6 920 1223 191 14 0 chr5 43945031 43945251 -108592008 - URR1B DNA MER1_type -1 224 2 6 920 285 298 79 47 chr5 43945251 43945326 -108591933 - L2a LINE L2 -59 3367 3286 6 920 409 294 88 57 chr5 43945577 43945750 -108591509 - B4 SINE B4 -2 290 122 6 920 180 0 0 0 chr5 43946561 43946581 -108590678 + (G)n Simple_repeat Simple_repeat 1 20 0 6 920 300 370 5 32 chr5 43947599 43947786 -108589473 - MLT1J LTR MaLR -78 434 253 6 920 339 299 145 11 chr5 43948308 43948494 -108588765 + ID_B1 SINE B4 14 224 0 6 920 291 93 0 0 chr5 43949156 43949199 -108588060 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 920 1688 41 0 0 chr5 43949929 43950123 -108587136 + L1Md_F3 LINE L1 5393 5586 -297 6 920 8459 31 4 0 chr5 43950123 43951102 -108586157 + L1Md_F3 LINE L1 5587 6569 -15 6 920 5411 41 2 3 chr5 43951662 43952304 -108584955 + L1_Mus1 LINE L1 5925 6565 -2 6 920 1086 140 0 0 chr5 43952311 43952490 -108584769 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 920 465 19 0 0 chr5 43952490 43952544 -108584715 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 6 920 1359 67 0 0 chr5 43952545 43952724 -108584535 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 6 920 522 0 0 0 chr5 43952724 43952782 -108584477 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 6 920 226 279 0 0 chr5 43952789 43952850 -108584409 + B4A SINE B4 1 61 -231 6 920 676 357 130 24 chr5 43956551 43957400 -108579859 - L2 LINE L2 -2436 983 45 6 920 429 180 16 32 chr5 43957884 43958010 -108579249 - RMER17B LTR ERVK -499 459 336 6 920 260 287 98 8 chr5 43959765 43959888 -108577371 - L2a LINE L2 0 3426 3293 6 920 252 283 97 0 chr5 43960187 43960300 -108576959 + PB1 SINE Alu 1 124 -3 6 920 22 0 0 0 chr5 43960300 43960322 -108576937 + AT_rich Low_complexity Low_complexity 1 22 0 6 920 410 376 44 28 chr5 43961069 43961318 -108575941 - MER74A LTR ERVL -250 308 56 6 920 357 188 68 55 chr5 43962888 43963051 -108574208 + RMER17C LTR ERVK 108 272 -138 6 920 441 127 0 0 chr5 43963382 43963461 -108573798 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 920 767 251 71 10 chr5 43964106 43964303 -108572956 + ID_B1 SINE B4 7 215 -9 6 920 477 343 77 5 chr5 43964391 43964769 -108572490 + HAL1b LINE L1 1076 1480 -529 6 920 702 250 5 85 chr5 43964881 43965082 -108572177 + B3 SINE B2 30 214 -2 6 920 308 276 94 56 chr5 43965110 43965290 -108571969 + HAL1b LINE L1 1627 1813 -196 6 920 589 344 37 34 chr5 43966394 43966749 -108570510 + ORR1E LTR MaLR 2 357 -2 6 920 231 191 43 0 chr5 43966783 43966830 -108570429 + MIRm SINE MIR 100 148 -128 6 920 1080 67 42 18 chr5 43967027 43967194 -108570065 - B2_Mm2 SINE B2 -23 172 2 6 920 300 250 0 140 chr5 43968041 43968063 -108569196 + MT2B LTR ERVL 149 155 -446 6 920 568 183 0 0 chr5 43968063 43968156 -108569103 + B1_Mur3 SINE Alu 1 93 -56 6 920 27 0 0 0 chr5 43969163 43969190 -108568069 + AT_rich Low_complexity Low_complexity 1 27 0 6 920 241 316 181 36 chr5 43970387 43970525 -108566734 + MLT1A LTR MaLR 1 158 -216 6 920 184 231 0 71 chr5 43970896 43970952 -108566307 + MER5B DNA MER1_type 2 53 -125 6 920 3058 35 0 0 chr5 43971086 43971484 -108565775 + BGLII LTR ERVK 24 421 0 6 920 401 305 5 118 chr5 43971845 43972031 -108565228 - MTEb LTR MaLR -11 368 204 6 920 583 286 13 44 chr5 43972061 43972288 -108564971 - MTE-int LTR MaLR -1329 251 32 6 920 287 320 10 0 chr5 43972430 43972533 -108564726 - MTEb LTR MaLR -255 104 1 6 920 228 307 40 0 chr5 43973857 43973932 -108563327 + ID4 SINE ID 2 79 -4 6 920 389 328 0 24 chr5 43974057 43974070 -108563189 + ID_B1 SINE B4 69 190 -34 6 920 490 295 0 0 chr5 43974070 43974182 -108563077 + B1F SINE Alu 1 112 -37 6 920 454 285 82 78 chr5 43974259 43974491 -108562768 - MLT1D LTR MaLR -135 370 138 6 920 563 219 121 52 chr5 43975764 43975937 -108561322 - MTE2a LTR MaLR 0 379 195 6 920 300 333 55 34 chr5 43975957 43976103 -108561156 - MTE2a LTR MaLR -230 149 1 6 920 516 56 0 0 chr5 43976625 43976697 -108560562 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 920 21 0 0 0 chr5 43978003 43978024 -108559235 + AT_rich Low_complexity Low_complexity 1 21 0 6 920 392 272 16 8 chr5 43978317 43978443 -108558816 + GA-rich Low_complexity Low_complexity 5 131 0 6 920 243 276 7 19 chr5 43978870 43979025 -108558234 + (TTGTG)n Simple_repeat Simple_repeat 5 157 0 6 920 854 131 0 28 chr5 43979031 43979212 -108558047 + (TTATG)n Simple_repeat Simple_repeat 3 178 0 6 920 601 204 9 32 chr5 43979366 43979503 -108557756 - MTE2a LTR MaLR -1 378 244 6 920 760 234 23 6 chr5 43979552 43979724 -108557535 + B3A SINE B2 8 182 -16 7 920 895 108 0 0 chr5 43979765 43979895 -108557364 + B3 SINE B2 1 130 -86 7 920 498 146 0 0 chr5 43980046 43980142 -108557117 + (CATAA)n Simple_repeat Simple_repeat 5 100 0 7 920 1310 175 9 0 chr5 43980221 43980444 -108556815 + URR1B DNA MER1_type 1 225 0 7 920 548 322 14 25 chr5 43980776 43981029 -108556230 + L1M5 LINE L1 5528 5781 -343 7 920 462 79 0 0 chr5 43981426 43981489 -108555770 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 920 680 253 20 7 chr5 43984286 43984437 -108552822 + B3A SINE B2 2 154 -44 7 920 383 83 0 16 chr5 43984437 43984498 -108552761 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 920 342 0 0 0 chr5 43985143 43985181 -108552078 + (TC)n Simple_repeat Simple_repeat 1 38 0 7 920 216 0 0 0 chr5 43985181 43985204 -108552055 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 920 297 0 0 0 chr5 43985280 43985313 -108551946 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 920 1839 275 60 16 chr5 43985336 43985390 -108551869 - Lx7 LINE L1 -333 7363 7314 7 920 234 0 0 0 chr5 43985390 43985416 -108551843 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 920 1839 275 60 16 chr5 43985416 43985923 -108551336 - Lx7 LINE L1 -383 7313 6778 7 920 233 171 0 0 chr5 43985922 43985963 -108551296 + RMER1B Other Other 1015 1055 -11 7 920 471 239 179 17 chr5 43985982 43986161 -108551098 + B3 SINE B2 6 213 -3 7 920 268 339 106 30 chr5 43986399 43986636 -108550623 - MLT2B1 LTR ERVL -97 423 169 7 920 667 248 7 7 chr5 43986771 43986917 -108550342 + B4 SINE B4 147 292 0 7 920 207 321 0 0 chr5 43986917 43986970 -108550289 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 920 193 265 35 46 chr5 43988103 43988190 -108549069 + L2a LINE L2 3340 3425 -1 7 920 357 165 54 21 chr5 43989541 43989634 -108547625 + L1Md_F3 LINE L1 6489 6584 0 7 920 183 233 0 23 chr5 43990063 43990107 -108547152 + MER5B DNA MER1_type 6 48 -130 7 920 244 329 0 12 chr5 43990704 43990784 -108546475 + MER63A DNA AcHobo 36 114 -96 7 920 844 203 14 0 chr5 43991363 43991501 -108545758 + B1_Mur2 SINE Alu 1 140 -9 7 920 261 298 0 41 chr5 43991503 43991601 -108545658 + GA-rich Low_complexity Low_complexity 3 96 0 7 920 246 22 20 61 chr5 43991976 43992025 -108545234 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 920 590 290 91 23 chr5 43994130 43994437 -108542822 - L1MB2 LINE L1 -209 5962 5635 7 920 485 266 58 26 chr5 43995454 43995643 -108541616 + B3A SINE B2 4 198 0 7 920 21 0 0 0 chr5 43995701 43995722 -108541537 + AT_rich Low_complexity Low_complexity 1 21 0 7 920 636 239 6 63 chr5 43995998 43996172 -108541087 + MER2 DNA MER2_type 168 331 -14 7 920 460 323 79 56 chr5 43996579 43997045 -108540214 - L2a LINE L2 -40 3386 2910 7 920 330 87 0 0 chr5 43997943 43997989 -108539270 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 920 930 322 28 80 chr5 43998017 43998378 -108538881 - Lx8 LINE L1 -158 7315 6974 7 920 226 150 0 24 chr5 43998521 43998562 -108538697 - MusHAL1 LINE L1 -1403 1309 1270 7 920 282 318 32 45 chr5 43998643 43998798 -108538461 + MLT1A1 LTR MaLR 240 392 -16 7 920 347 319 127 0 chr5 44002221 44002378 -108534881 - MER20 DNA MER1_type -4 215 39 1 920 683 121 17 0 chr5 44003265 44003381 -108533878 + (GGGA)n Simple_repeat Simple_repeat 2 119 0 2 920 4472 57 0 0 chr5 44003967 44004511 -108532748 + L1Md_F2 LINE L1 6027 6570 -12 3 920 1872 154 15 3 chr5 44004640 44004965 -108532294 + Lx LINE L1 6323 6651 -3 4 920 214 342 283 25 chr5 44006262 44006421 -108530838 + MIRb SINE MIR 35 234 -34 5 920 477 0 0 0 chr5 44007987 44008040 -108529219 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 920 1043 238 31 15 chr5 44008043 44008303 -108528956 - B4 SINE B4 -26 266 3 7 920 270 323 81 0 chr5 44009674 44009773 -108527486 - PB1D10 SINE Alu -8 109 3 8 920 591 303 55 0 chr5 44009773 44009852 -108527407 - ID_B1 SINE B4 -134 90 3 9 920 306 295 67 15 chr5 44010276 44010410 -108526849 + MLT1A LTR MaLR 234 374 0 1 920 238 291 116 16 chr5 44010416 44010545 -108526714 - MIR SINE MIR -106 156 15 1 920 184 167 42 0 chr5 44010740 44010788 -108526471 + GA-rich Low_complexity Low_complexity 1 50 0 1 920 251 381 103 5 chr5 44011132 44011327 -108525932 - MLT1K LTR MaLR -313 282 69 1 920 378 42 0 0 chr5 44011829 44011877 -108525382 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 920 21 0 0 0 chr5 44011964 44011985 -108525274 + AT_rich Low_complexity Low_complexity 1 21 0 1 920 397 266 125 21 chr5 44013662 44013854 -108523405 - MER20 DNA MER1_type -4 215 4 1 920 271 252 0 31 chr5 44013883 44013984 -108523275 - RLTR20A LTR ERVK 0 541 377 1 920 1826 52 4 34 chr5 44013985 44014224 -108523035 - L1_Mus2 LINE L1 -135 6431 6200 1 920 854 88 32 0 chr5 44014224 44014349 -108522910 + L1_Mus2 LINE L1 6437 6565 -1 1 920 569 290 120 73 chr5 44014671 44014731 -108522528 - RLTR20A LTR ERVK -150 428 370 1 920 405 58 0 0 chr5 44014731 44014783 -108522476 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 2 920 1218 194 122 35 chr5 44014783 44015131 -108522128 - RLTR20A LTR ERVK -209 369 1 1 920 1900 77 0 20 chr5 44015301 44015553 -108521706 + L1_Mus1 LINE L1 6320 6566 -1 2 920 795 97 0 0 chr5 44015570 44015684 -108521575 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 2 920 1074 133 0 0 chr5 44015685 44015858 -108521401 + (GGAA)n Simple_repeat Simple_repeat 4 176 0 2 920 3413 156 28 25 chr5 44017212 44017818 -108519441 + Lx LINE L1 6046 6653 -1 2 920 926 258 49 35 chr5 44018146 44018431 -108518828 - B4A SINE B4 -3 289 1 2 920 248 303 52 13 chr5 44018675 44018752 -108518507 - LTR16C LTR ERVL -14 475 396 2 920 234 0 0 0 chr5 44018815 44018841 -108518418 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 920 432 0 0 0 chr5 44018841 44018888 -108518371 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 920 306 73 0 0 chr5 44019333 44019374 -108517885 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2 920 520 306 46 29 chr5 44019390 44019565 -108517694 - B3A SINE B2 -20 178 1 3 920 987 180 8 107 chr5 44019782 44020025 -108517234 + URR1A DNA MER1_type 8 226 0 3 920 22970 133 101 16 chr5 44020074 44025757 -108511502 + Lx3C LINE L1 687 6962 -14 3 920 431 48 0 16 chr5 44025758 44025821 -108511438 + (TAAAA)n Simple_repeat Simple_repeat 4 65 0 3 920 33351 73 3 3 chr5 44027086 44032149 -108505110 + L1Md_F2 LINE L1 178 5234 -649 3 920 234 91 0 0 chr5 44032149 44032182 -108505077 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 920 33351 71 2 3 chr5 44032182 44032523 -108504736 + L1Md_F2 LINE L1 5235 5583 -300 3 920 8084 47 13 2 chr5 44032524 44033509 -108503750 + L1Md_F2 LINE L1 5587 6582 0 3 920 495 0 0 0 chr5 44033667 44033722 -108503537 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 3 920 1149 52 0 0 chr5 44033722 44033858 -108503401 - B1_Mm SINE Alu -11 136 1 3 920 492 283 16 80 chr5 44035254 44035442 -108501817 - MER20 DNA MER1_type -6 213 38 3 920 397 321 0 15 chr5 44035579 44035715 -108501544 + B4A SINE B4 157 290 -2 3 920 384 22 0 0 chr5 44035719 44035764 -108501495 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 920 235 418 67 14 chr5 44035944 44036153 -108501106 + MamGypLTR3 LTR Gypsy 567 786 -53 4 920 1037 152 6 0 chr5 44037035 44037206 -108500053 - MTC LTR MaLR -123 298 127 4 920 451 286 57 11 chr5 44037200 44037377 -108499882 + MTE2a LTR MaLR 195 379 0 4 920 1501 142 4 0 chr5 44037503 44037728 -108499531 - URR1A DNA MER1_type 0 226 1 4 920 813 110 159 0 chr5 44037764 44037909 -108499350 + URR1A DNA MER1_type 1 168 -58 4 920 258 276 0 84 chr5 44038345 44038428 -108498831 + ID4_ SINE ID 6 81 -2 4 920 582 320 157 20 chr5 44038479 44038874 -108498385 - MLT1G LTR MaLR -128 463 15 4 920 31 0 0 0 chr5 44038968 44038999 -108498260 + AT_rich Low_complexity Low_complexity 1 31 0 4 14 457 239 138 152 chr5 44040044 44040233 -108497026 + RLTR23 LTR ERV1 8 157 -273 4 921 414 0 0 0 chr5 44040233 44040279 -108496980 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 921 457 239 138 152 chr5 44040279 44040518 -108496741 + RLTR23 LTR ERV1 158 430 0 4 921 349 302 0 23 chr5 44040518 44040600 -108496659 - PB1D7 SINE Alu -28 92 13 5 921 4907 140 5 30 chr5 44040905 44041772 -108495487 + L1Md_F2 LINE L1 441 1271 -5453 5 921 3771 59 0 2 chr5 44041773 44042246 -108495013 + L1Md_F2 LINE L1 5115 5586 -297 5 921 8170 51 2 0 chr5 44042246 44043239 -108494020 + L1Md_F2 LINE L1 5587 6581 -1 5 921 34359 52 3 2 chr5 44043252 44047577 -108489682 + L1Md_F2 LINE L1 1254 5586 -297 5 921 7807 55 11 0 chr5 44047577 44048546 -108488713 + L1Md_F2 LINE L1 5587 6566 -16 5 921 2407 92 111 3 chr5 44048922 44049293 -108487966 + IAPLTR2a LTR ERVK 1 411 0 5 921 3756 177 44 110 chr5 44049530 44050478 -108486781 + RMER19B LTR ERVK 1 886 -16 5 921 1134 76 0 14 chr5 44050479 44050614 -108486645 + B1_Mm SINE Alu 2 136 -11 5 921 198 0 0 0 chr5 44050614 44050636 -108486623 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 921 624 280 47 118 chr5 44051193 44051500 -108485759 - MLT1B LTR MaLR -6 384 100 5 921 2494 163 37 0 chr5 44051500 44051906 -108485353 - MTC LTR MaLR 0 421 1 5 921 624 280 47 118 chr5 44051906 44051979 -108485280 - MLT1B LTR MaLR -291 99 31 5 921 483 259 52 22 chr5 44052226 44052360 -108484899 + B4A SINE B4 2 139 -153 6 921 398 343 112 43 chr5 44052429 44052758 -108484501 - MER74B LTR ERVL -197 425 74 6 921 633 300 82 33 chr5 44052758 44053003 -108484256 + B4 SINE B4 1 257 -35 6 921 243 0 0 0 chr5 44053114 44053141 -108484118 + (T)n Simple_repeat Simple_repeat 1 27 0 6 921 240 280 0 0 chr5 44054428 44054503 -108482756 + (TA)n Simple_repeat Simple_repeat 1 75 0 6 921 313 314 17 76 chr5 44057356 44057528 -108479731 - L2c LINE L2 -3 3384 3223 6 921 309 51 0 0 chr5 44057695 44057734 -108479525 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 921 394 326 67 33 chr5 44057736 44058142 -108479117 - L2c LINE L2 -313 3113 2604 6 921 411 275 109 40 chr5 44058296 44058497 -108478762 - Ricksha_c DNA MuDR -1307 741 527 6 921 245 98 0 24 chr5 44059695 44059737 -108477522 + (TTCTCC)n Simple_repeat Simple_repeat 6 46 0 6 921 550 114 0 0 chr5 44060154 44060233 -108477026 - ORR1A2 LTR MaLR -3 324 246 6 921 286 281 114 106 chr5 44060222 44060449 -108476810 - MER57D LTR ERV1 -182 229 1 7 921 740 207 207 0 chr5 44060850 44061029 -108476230 - B3 SINE B2 0 216 1 7 921 316 241 35 61 chr5 44061669 44061784 -108475475 - PB1D7 SINE Alu -7 113 2 7 921 283 291 23 0 chr5 44062149 44062235 -108475024 + L2c LINE L2 3298 3385 -2 7 921 1044 232 129 20 chr5 44062669 44062972 -108474287 + MTD LTR MaLR 79 414 -5 7 921 1025 155 7 11 chr5 44063108 44063363 -108473896 + CT-rich Low_complexity Low_complexity 1 253 0 7 921 332 178 9 38 chr5 44063363 44063391 -108473868 + polypyrimidine Low_complexity Low_complexity 4 31 0 7 921 207 0 0 0 chr5 44063857 44063880 -108473379 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 7 921 261 75 0 0 chr5 44064392 44064432 -108472827 + (CAGA)n Simple_repeat Simple_repeat 1 40 0 7 921 583 284 61 88 chr5 44065535 44065832 -108471427 + B4 SINE B4 1 289 -3 7 921 410 236 61 54 chr5 44066683 44066831 -108470428 - L1M3 LINE L1 -948 5192 5044 8 921 22 0 0 0 chr5 44066875 44066897 -108470362 + AT_rich Low_complexity Low_complexity 1 22 0 8 921 354 223 287 0 chr5 44066909 44067030 -108470229 - RSINE1 SINE B4 -4 161 6 8 921 2948 274 55 23 chr5 44067033 44068142 -108469117 - L1M3 LINE L1 -1189 4951 3808 8 921 274 301 61 27 chr5 44068943 44069090 -108468169 + L2b LINE L2 3100 3251 -124 8 921 234 0 0 0 chr5 44070154 44070180 -108467079 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 8 921 1172 135 17 0 chr5 44070181 44070359 -108466900 - B2_Mm2 SINE B2 -12 183 3 8 921 1166 75 0 0 chr5 44070904 44071050 -108466209 - B1_Mus2 SINE Alu 0 147 2 8 921 423 214 0 0 chr5 44071407 44071533 -108465726 + CT-rich Low_complexity Low_complexity 1 126 0 8 921 760 299 86 31 chr5 44073771 44074075 -108463184 - MTD LTR MaLR -14 405 101 8 921 625 12 0 45 chr5 44074075 44074163 -108463096 + (GA)n Simple_repeat Simple_repeat 2 85 0 8 921 760 312 85 39 chr5 44074163 44074258 -108463001 - MTD LTR MaLR -319 100 1 8 921 963 215 40 10 chr5 44074887 44075089 -108462170 + B3 SINE B2 2 209 -7 9 921 225 254 0 16 chr5 44076042 44076106 -108461153 + (TG)n Simple_repeat Simple_repeat 1 63 0 9 921 391 292 71 38 chr5 44076116 44076383 -108460876 - B4A SINE B4 -16 276 1 9 921 726 260 87 19 chr5 44076785 44076993 -108460266 + B4A SINE B4 1 222 -70 9 921 230 0 33 0 chr5 44077385 44077415 -108459844 + (ATTAG)n Simple_repeat Simple_repeat 4 34 0 9 921 318 50 0 0 chr5 44077491 44077531 -108459728 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 921 881 159 41 0 chr5 44078490 44078660 -108458599 - URR1B DNA MER1_type 0 225 49 9 921 593 185 7 82 chr5 44079821 44079968 -108457291 - B1_Mm SINE Alu 0 147 12 9 921 381 223 71 40 chr5 44080742 44080868 -108456391 - MLT1A1 LTR MaLR -11 397 268 9 921 834 161 0 57 chr5 44081967 44082125 -108455134 + B1_Mur3 SINE Alu 1 149 0 9 921 262 138 17 17 chr5 44083051 44083110 -108454149 + CT-rich Low_complexity Low_complexity 3 61 0 1 921 360 0 0 0 chr5 44083161 44083201 -108454058 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 921 432 0 0 0 chr5 44083203 44083251 -108454008 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 921 1128 88 0 0 chr5 44084865 44085139 -108452120 + (TG)n Simple_repeat Simple_repeat 1 274 0 1 921 464 77 0 13 chr5 44085625 44085704 -108451555 + (GTTTG)n Simple_repeat Simple_repeat 2 79 0 1 921 1231 42 0 0 chr5 44085707 44085851 -108451408 - B1_Mus1 SINE Alu 0 148 5 1 921 790 231 18 3 chr5 44086684 44087005 -108450254 - MTE2b LTR MaLR 0 379 1 1 921 28 0 0 0 chr5 44088317 44088345 -108448914 + AT_rich Low_complexity Low_complexity 1 28 0 1 921 422 0 38 0 chr5 44088842 44088895 -108448364 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 921 1138 58 0 0 chr5 44088895 44089034 -108448225 - B1_Mus1 SINE Alu -9 139 1 1 921 364 202 25 12 chr5 44089599 44089679 -108447580 - B1F SINE Alu -51 98 18 1 921 218 211 39 0 chr5 44089770 44089874 -108447385 + GA-rich Low_complexity Low_complexity 1 108 0 1 921 202 235 122 12 chr5 44089902 44089984 -108447275 - MIR SINE MIR -130 132 42 1 921 252 77 0 0 chr5 44090473 44090512 -108446747 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 1 921 1281 84 50 6 chr5 44091562 44091742 -108445517 - B2_Mm2 SINE B2 -6 189 2 1 921 895 270 18 39 chr5 44091843 44092124 -108445135 + B4A SINE B4 5 279 -13 1 921 288 53 0 0 chr5 44092125 44092163 -108445096 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 921 287 239 14 29 chr5 44093162 44093231 -108444028 + ID2 SINE ID 4 71 -12 1 921 242 279 38 12 chr5 44093231 44093242 -108444017 + ID SINE ID 4 85 -139 1 921 2237 127 82 8 chr5 44093568 44093932 -108443327 - ORR1B1 LTR MaLR -3 391 1 1 921 398 36 18 0 chr5 44094895 44094951 -108442308 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 921 300 27 0 0 chr5 44095447 44095484 -108441775 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 921 359 223 52 92 chr5 44095838 44095949 -108441310 + L1MB4 LINE L1 6027 6143 -37 1 921 351 191 202 0 chr5 44095949 44096038 -108441221 + PB1D10 SINE Alu 5 111 -6 1 921 359 223 52 92 chr5 44096038 44096079 -108441180 + L1MB4 LINE L1 6144 6173 -7 1 921 862 109 109 0 chr5 44096468 44096606 -108440653 + B2_Mm2 SINE B2 1 153 -42 1 921 452 18 18 0 chr5 44096608 44096665 -108440594 + (CATA)n Simple_repeat Simple_repeat 2 59 0 1 921 312 312 18 44 chr5 44096757 44096871 -108440388 - B3A SINE B2 -15 183 73 1 921 373 258 124 0 chr5 44098269 44098366 -108438893 + PB1D7 SINE Alu 1 109 -11 1 921 349 247 11 34 chr5 44098391 44098479 -108438780 + RSINE1 SINE B4 3 88 -77 1 921 2166 151 86 177 chr5 44098759 44099340 -108437919 + RLTR11A LTR ERVK 1 528 0 1 921 237 65 0 0 chr5 44099456 44099487 -108437772 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 921 361 106 30 15 chr5 44099553 44099620 -108437639 - B1_Mur2 SINE Alu -37 112 45 1 921 212 321 48 0 chr5 44099960 44100044 -108437215 - MIRc SINE MIR -113 155 68 1 921 189 107 0 0 chr5 44101051 44101079 -108436180 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 921 279 0 0 0 chr5 44101079 44101109 -108436150 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 921 333 0 0 0 chr5 44103237 44103274 -108433985 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1 921 516 216 79 163 chr5 44104225 44104452 -108432807 + B3 SINE B2 3 210 -6 1 921 4463 8 0 0 chr5 44104505 44104987 -108432272 - LTRIS_Mm LTR ERV1 0 482 1 1 921 629 97 147 39 chr5 44106500 44106629 -108430630 + B1_Mur4 SINE Alu 7 149 -1 1 921 210 283 51 130 chr5 44106700 44106838 -108430421 - L2a LINE L2 -6 3420 3294 1 921 592 284 81 16 chr5 44107738 44107924 -108429335 + B3A SINE B2 1 198 0 1 921 209 108 27 0 chr5 44108115 44108152 -108429107 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 1 921 283 282 130 35 chr5 44109094 44109263 -108427996 - MIRb SINE MIR -47 221 37 1 921 232 275 63 42 chr5 44111040 44111135 -108426124 - ID_B1 SINE B4 -79 145 49 1 921 204 40 0 0 chr5 44112203 44112228 -108425031 + (A)n Simple_repeat Simple_repeat 1 25 0 1 921 640 285 33 0 chr5 44112240 44112391 -108424868 + ID_B1 SINE B4 2 157 -67 1 921 487 239 39 90 chr5 44112391 44112547 -108424712 + B3 SINE B2 1 148 -68 1 921 523 208 110 16 chr5 44112547 44112674 -108424585 + B1_Mur1 SINE Alu 3 141 -8 1 921 360 0 0 0 chr5 44112718 44112758 -108424501 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 921 347 203 0 0 chr5 44113069 44113128 -108424131 + ID_B1 SINE B4 145 203 -21 1 921 246 250 0 86 chr5 44113072 44113142 -108424117 + B1F SINE Alu 70 133 -16 1 921 315 0 0 0 chr5 44113301 44113336 -108423923 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 1 921 25 0 0 0 chr5 44113427 44113452 -108423807 + AT_rich Low_complexity Low_complexity 1 25 0 1 921 588 279 0 20 chr5 44113827 44113977 -108423282 + B1_Mur1 SINE Alu 1 147 -2 1 921 210 208 0 0 chr5 44113995 44114043 -108423216 + A-rich Low_complexity Low_complexity 3 50 0 1 921 320 303 101 0 chr5 44115215 44115314 -108421945 + B4A SINE B4 2 110 -182 1 921 398 246 94 60 chr5 44116035 44116058 -108421201 - B3A SINE B2 -76 122 106 1 921 771 42 0 55 chr5 44116058 44116185 -108421074 + (TCTA)n Simple_repeat Simple_repeat 3 122 0 1 921 573 89 108 1 chr5 44116185 44116278 -108420981 - B2_Mm1t SINE B2 -93 105 2 1 921 226 328 42 8 chr5 44117076 44117196 -108420063 - MIR SINE MIR -36 226 103 1 921 198 0 0 0 chr5 44117375 44117397 -108419862 + (A)n Simple_repeat Simple_repeat 1 22 0 1 921 398 232 17 67 chr5 44118522 44118642 -108418617 + PB1D9 SINE Alu 4 117 -3 1 921 213 39 0 0 chr5 44120823 44120849 -108416410 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 921 570 86 0 0 chr5 44121933 44122014 -108415245 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 1 921 189 0 0 0 chr5 44122022 44122043 -108415216 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 1 921 1125 173 60 52 chr5 44122450 44122637 -108414622 - ORR1D1-int LTR MaLR -1114 256 57 1 921 273 29 0 0 chr5 44122637 44122671 -108414588 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 921 1125 173 60 52 chr5 44122671 44122733 -108414526 - ORR1D1-int LTR MaLR -1314 56 5 1 921 593 208 212 200 chr5 44122728 44123058 -108414201 - ORR1D1 LTR MaLR -40 334 1 1 921 365 318 9 43 chr5 44123058 44123138 -108414121 - RSINE1 SINE B4 -88 77 2 1 921 333 330 26 58 chr5 44123230 44123420 -108413839 + L1MC4 LINE L1 6773 6956 -1086 1 921 284 209 29 43 chr5 44123896 44123966 -108413293 + ID2 SINE ID 2 70 -13 1 921 456 258 21 99 chr5 44124860 44125002 -108412257 + B1F SINE Alu 3 133 -16 1 921 497 264 44 44 chr5 44126261 44126443 -108410816 + B3A SINE B2 1 182 -16 1 921 25 31 0 0 chr5 44126784 44126816 -108410443 + AT_rich Low_complexity Low_complexity 1 32 0 1 921 234 174 0 0 chr5 44127050 44127096 -108410163 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 921 382 326 87 22 chr5 44128517 44128655 -108408604 + B3A SINE B2 1 147 -51 1 921 180 313 181 57 chr5 44129197 44129302 -108407957 - MIR SINE MIR -122 140 23 1 921 895 155 192 0 chr5 44129444 44129631 -108407628 - URR1B DNA MER1_type -2 223 1 1 921 231 300 149 26 chr5 44129907 44130061 -108407198 + MIRb SINE MIR 96 268 0 1 921 22 70 0 0 chr5 44130487 44130530 -108406729 + AT_rich Low_complexity Low_complexity 1 43 0 1 921 814 143 35 7 chr5 44131029 44131170 -108406089 - B1_Mur4 SINE Alu 0 150 6 1 921 525 131 40 10 chr5 44132738 44132838 -108404421 - MYSERV16_I-int LTR ERVK -2198 128 26 1 921 279 0 0 0 chr5 44133409 44133440 -108403819 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1 921 295 196 0 128 chr5 44133580 44133697 -108403562 + RMER3D-int LTR ERVK 1112 1213 -1629 1 921 3613 164 106 21 chr5 44133781 44134529 -108402730 + MYSERV16_I-int LTR ERVK 1 811 -1515 1 921 914 171 10 41 chr5 44134529 44134724 -108402535 + RLTR20B2 LTR ERVK 190 378 -182 1 921 21 57 0 0 chr5 44135694 44135729 -108401530 + AT_rich Low_complexity Low_complexity 1 35 0 1 921 23 0 0 0 chr5 44138011 44138034 -108399225 + AT_rich Low_complexity Low_complexity 1 23 0 1 921 275 242 106 32 chr5 44138539 44138633 -108398626 - PB1 SINE Alu -3 124 24 1 921 21 71 0 0 chr5 44140097 44140139 -108397120 + AT_rich Low_complexity Low_complexity 1 42 0 1 921 612 277 16 33 chr5 44140481 44140664 -108396595 - B3A SINE B2 -18 180 1 1 921 21 0 0 0 chr5 44140735 44140756 -108396503 + AT_rich Low_complexity Low_complexity 1 21 0 1 921 312 265 125 81 chr5 44141355 44141515 -108395744 - ID_B1 SINE B4 -57 167 1 1 921 184 250 164 14 chr5 44141564 44141637 -108395622 + L2 LINE L2 111 194 -3225 1 921 23 0 0 0 chr5 44141945 44141968 -108395291 + AT_rich Low_complexity Low_complexity 1 23 0 1 921 2163 182 113 76 chr5 44142623 44143164 -108394095 - RLTR18 LTR ERVK -1 615 55 1 921 382 310 61 23 chr5 44143435 44143567 -108393692 - B1F1 SINE Alu -1 148 12 1 921 394 229 123 9 chr5 44143764 44143870 -108393389 - B1F SINE Alu -6 143 26 1 921 718 183 0 22 chr5 44143846 44143980 -108393279 - B1_Mus2 SINE Alu -16 131 1 1 921 264 59 0 0 chr5 44144420 44144454 -108392805 + (TATG)n Simple_repeat Simple_repeat 4 37 0 1 921 513 47 0 0 chr5 44144482 44144546 -108392713 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 921 807 216 7 0 chr5 44144906 44145054 -108392205 - B1_Mur4 SINE Alu 0 150 2 1 921 339 288 35 63 chr5 44145061 44145235 -108392024 + L1MEc LINE L1 750 918 -5482 1 921 445 268 343 27 chr5 44145257 44145858 -108391401 + L1M2a LINE L1 7 797 -6371 2 921 226 264 0 0 chr5 44145863 44145916 -108391343 + L1M2a LINE L1 1387 1439 -5729 2 921 661 217 27 37 chr5 44145927 44146099 -108391160 - B3 SINE B2 0 216 1 2 921 289 343 52 15 chr5 44146128 44146264 -108390995 + L1M2a LINE L1 1470 1610 -5558 2 921 384 314 32 32 chr5 44146616 44146774 -108390485 + ID_B1 SINE B4 63 220 -4 2 921 279 281 87 22 chr5 44147639 44147777 -108389482 + L1M2a LINE L1 5118 5264 -1897 2 921 255 31 0 0 chr5 44147855 44147887 -108389372 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 921 301 173 133 0 chr5 44148093 44148168 -108389091 + L1M2a LINE L1 5345 5429 -1732 2 921 663 227 67 51 chr5 44148248 44148443 -108388816 + B3A SINE B2 1 198 0 2 921 441 172 47 87 chr5 44148718 44148845 -108388414 - B3 SINE B2 -30 186 65 2 921 526 268 18 2 chr5 44148905 44149037 -108388222 + B1_Mur1 SINE Alu 7 142 -7 2 921 27 49 0 0 chr5 44150939 44150980 -108386279 + AT_rich Low_complexity Low_complexity 1 41 0 2 921 517 300 96 63 chr5 44151246 44151516 -108385743 - B4A SINE B4 -13 279 1 2 921 21 0 0 0 chr5 44152759 44152780 -108384479 + AT_rich Low_complexity Low_complexity 1 21 0 2 921 314 260 52 0 chr5 44153541 44153618 -108383641 - ID4 SINE ID 0 83 3 2 921 362 272 126 0 chr5 44154836 44154939 -108382320 - MER20 DNA MER1_type -1 218 103 2 921 827 182 151 22 chr5 44154939 44155124 -108382135 - URR1A DNA MER1_type 0 226 18 2 921 248 200 18 18 chr5 44155513 44155569 -108381690 + ID_B1 SINE B4 102 157 -67 2 921 272 202 0 132 chr5 44155606 44155697 -108381562 + PB1D9 SINE Alu 42 120 0 2 921 326 295 77 50 chr5 44156183 44156365 -108380894 - L1MC5 LINE L1 -48 7913 7727 2 921 569 174 35 9 chr5 44157415 44157531 -108379728 + PB1D9 SINE Alu 2 120 0 2 921 237 268 42 0 chr5 44157532 44157603 -108379656 + GA-rich Low_complexity Low_complexity 5 78 0 2 921 653 162 17 25 chr5 44158049 44158169 -108379090 - B1_Mur1 SINE Alu -20 129 11 2 921 308 302 101 25 chr5 44158063 44158182 -108379077 - B4 SINE B4 -88 204 77 2 921 410 323 92 101 chr5 44158500 44158707 -108378552 - Tigger5 DNA MER2_type -2195 211 7 2 921 848 247 23 0 chr5 44158771 44158945 -108378314 + B3 SINE B2 1 178 -38 2 921 1515 160 57 119 chr5 44159753 44160149 -108377110 + ORR1C2 LTR MaLR 1 350 -34 2 921 1279 174 53 47 chr5 44160385 44160686 -108376573 + Lx7 LINE L1 7389 7691 -5 2 921 429 280 21 0 chr5 44160911 44161004 -108376255 + RSINE1 SINE B4 4 98 -67 2 921 582 268 120 5 chr5 44161046 44161237 -108376022 + B3 SINE B2 2 214 -2 2 921 1440 34 45 6 chr5 44161574 44161753 -108375506 + B2_Mm2 SINE B2 1 186 -9 2 921 683 246 14 0 chr5 44162097 44162235 -108375024 + B1_Mur1 SINE Alu 1 140 -9 2 921 887 263 139 44 chr5 44162763 44163015 -108374244 + ORR1D2 LTR MaLR 1 266 -104 2 921 306 0 0 0 chr5 44163015 44163049 -108374210 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 921 887 263 139 44 chr5 44163049 44163134 -108374125 + ORR1D2 LTR MaLR 267 369 -1 2 921 325 252 87 39 chr5 44164023 44164126 -108373133 - PB1D10 SINE Alu 0 117 10 2 921 363 294 0 0 chr5 44164220 44164305 -108372954 - BC1_Mm scRNA scRNA -67 85 1 2 921 686 192 0 16 chr5 44164322 44164449 -108372810 - B1_Mur1 SINE Alu 0 149 25 2 921 343 293 0 0 chr5 44164451 44164526 -108372733 + MER31B LTR ERV1 206 280 -186 2 921 461 216 63 81 chr5 44165308 44165419 -108371840 - PB1D9 SINE Alu -6 114 6 2 921 598 214 60 16 chr5 44165604 44165730 -108371529 + B1_Mur1 SINE Alu 1 135 -14 2 921 216 0 0 0 chr5 44165730 44165754 -108371505 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 921 598 205 59 17 chr5 44165754 44165766 -108371493 + B1_Mur1 SINE Alu 136 146 -3 2 921 21 36 0 0 chr5 44166204 44166232 -108371027 + AT_rich Low_complexity Low_complexity 1 28 0 2 921 280 341 71 8 chr5 44166255 44166382 -108370877 - L2a LINE L2 -17 3409 3275 2 921 720 269 98 20 chr5 44166408 44166662 -108370597 - MER58B DNA MER1_type -2 339 66 2 921 408 255 62 81 chr5 44167027 44167236 -108370023 + L1MA9 LINE L1 6103 6307 -5 2 921 587 292 49 0 chr5 44167764 44167949 -108369310 + MER20 DNA MER1_type 26 219 0 2 921 227 311 22 0 chr5 44168116 44168206 -108369053 - Charlie9 DNA MER1_type -2665 92 1 2 921 364 286 103 24 chr5 44168643 44168808 -108368451 + MIRb SINE MIR 25 202 -66 2 921 865 268 11 0 chr5 44169070 44169260 -108367999 - B3 SINE B2 -24 192 1 2 921 1076 51 0 0 chr5 44169306 44169444 -108367815 + B1_Mm SINE Alu 9 146 -1 2 921 261 0 0 0 chr5 44169447 44169476 -108367783 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 921 466 188 130 23 chr5 44170128 44170259 -108367000 - Lx7 LINE L1 -336 7360 7216 2 921 180 0 0 0 chr5 44170991 44171011 -108366248 + (T)n Simple_repeat Simple_repeat 1 20 0 2 921 383 268 88 16 chr5 44171076 44171201 -108366058 + ID_B1 SINE B4 84 217 -7 2 922 857 102 0 0 chr5 44171343 44171470 -108365789 + B1_Mus1 SINE Alu 22 148 0 2 922 257 317 120 16 chr5 44171495 44171513 -108365746 + B4 SINE B4 69 159 -133 2 922 451 212 100 10 chr5 44171513 44171613 -108365646 + B1_Mur3 SINE Alu 1 109 -40 2 922 264 256 115 11 chr5 44171960 44172047 -108365212 - MER5B DNA MER1_type -39 139 44 2 922 23 68 0 0 chr5 44173071 44173115 -108364144 + GC_rich Low_complexity Low_complexity 1 44 0 2 922 39 84 0 0 chr5 44173360 44173455 -108363804 + GC_rich Low_complexity Low_complexity 1 95 0 2 922 298 271 78 85 chr5 44174394 44174547 -108362712 + MIR SINE MIR 22 173 -89 2 922 262 338 0 0 chr5 44174833 44174910 -108362349 + CT-rich Low_complexity Low_complexity 4 80 0 2 922 351 272 11 16 chr5 44176029 44176175 -108361084 + B3 SINE B2 2 209 -7 2 922 186 71 0 0 chr5 44176362 44176390 -108360869 + (CAGAGA)n Simple_repeat Simple_repeat 6 33 0 2 922 529 209 83 33 chr5 44176443 44176641 -108360618 + MTEa LTR MaLR 139 375 -4 2 922 4133 149 88 19 chr5 44176912 44177745 -108359514 - RMER19B LTR ERVK -12 890 1 2 922 266 245 38 0 chr5 44177881 44177934 -108359325 + ORR1E LTR MaLR 53 107 -252 2 922 512 284 12 36 chr5 44178328 44178496 -108358763 + RSINE1 SINE B4 2 165 0 2 922 391 315 19 0 chr5 44179082 44179190 -108358069 - PB1D7 SINE Alu -5 115 6 2 922 251 352 11 0 chr5 44179111 44179199 -108358060 - B4A SINE B4 -123 169 81 2 922 286 173 0 0 chr5 44179488 44179540 -108357719 - Lx8 LINE L1 -2 7471 7420 2 922 1058 212 200 86 chr5 44179969 44180480 -108356779 + RMER4B LTR ERVK 17 585 0 2 922 192 77 0 0 chr5 44180685 44180711 -108356548 + (A)n Simple_repeat Simple_repeat 1 26 0 2 922 4912 47 8 3 chr5 44181251 44181855 -108355404 + L1Md_F3 LINE L1 5964 6570 -14 2 922 265 289 13 0 chr5 44182284 44182360 -108354899 - RSINE1 SINE B4 -43 122 46 2 922 822 270 24 0 chr5 44182429 44182640 -108354619 + B3 SINE B2 1 216 0 2 922 261 0 0 0 chr5 44183330 44183359 -108353900 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2 922 1081 75 0 0 chr5 44183370 44183517 -108353742 - B1_Mus2 SINE Alu 0 147 1 2 922 689 268 126 5 chr5 44183520 44183711 -108353548 - B3 SINE B2 -1 215 2 2 922 534 67 0 0 chr5 44183873 44183948 -108353311 + (TC)n Simple_repeat Simple_repeat 1 75 0 2 922 288 0 0 0 chr5 44183948 44183980 -108353279 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 922 227 303 30 0 chr5 44183981 44184047 -108353212 + CT-rich Low_complexity Low_complexity 1 68 0 2 922 228 302 16 87 chr5 44184588 44184715 -108352544 + L1_Rod LINE L1 503 620 -6552 2 922 27 0 0 0 chr5 44184764 44184791 -108352468 + AT_rich Low_complexity Low_complexity 1 27 0 2 922 1343 236 51 20 chr5 44185750 44186100 -108351159 - ORR1D2 LTR MaLR -9 361 1 2 922 228 365 0 0 chr5 44186206 44186269 -108350990 - MER2 DNA MER2_type -279 66 4 2 922 721 279 149 4 chr5 44186473 44186728 -108350531 - MTEb LTR MaLR -19 360 69 2 922 297 284 132 59 chr5 44186615 44186918 -108350341 - MLT2B5 LTR ERVL -392 325 1 2 922 1155 82 0 0 chr5 44187153 44187299 -108349960 + B1_Mus1 SINE Alu 3 148 0 2 922 366 23 0 0 chr5 44187633 44187676 -108349583 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 922 544 206 71 0 chr5 44187698 44187824 -108349435 - ID_B1 SINE B4 -12 212 78 2 922 199 365 36 21 chr5 44187899 44188039 -108349220 - MIR SINE MIR -34 228 87 2 922 2417 288 104 16 chr5 44188767 44189781 -108347478 + ORR1E-int LTR MaLR 8 1111 -469 2 922 492 18 0 0 chr5 44189874 44189931 -108347328 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 922 261 83 0 0 chr5 44189931 44189966 -108347293 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 922 573 306 28 9 chr5 44189967 44190159 -108347100 + ORR1E-int LTR MaLR 1332 1527 -53 2 922 441 314 26 26 chr5 44190159 44190352 -108346907 + ORR1E LTR MaLR 1 193 -166 2 922 359 220 72 18 chr5 44191303 44191426 -108345833 + L1MA8 LINE L1 5881 6027 -285 2 922 404 330 88 19 chr5 44191600 44191816 -108345443 + B4A SINE B4 7 237 -55 2 922 463 347 31 13 chr5 44191959 44192184 -108345075 + Lx8 LINE L1 7093 7321 -152 2 922 757 134 0 53 chr5 44192212 44192401 -108344858 + C-rich Low_complexity Low_complexity 1 179 0 2 922 270 0 0 0 chr5 44192424 44192454 -108344805 + (TTTCC)n Simple_repeat Simple_repeat 3 32 0 2 922 286 277 234 6 chr5 44193175 44193342 -108343917 + Charlie9 DNA MER1_type 1128 1332 -1425 2 922 363 180 35 37 chr5 44193524 44193616 -108343643 - B1F SINE Alu -224 90 5 2 922 2441 142 3 0 chr5 44194121 44194487 -108342772 + ORR1B2 LTR MaLR 1 367 0 2 922 590 216 70 86 chr5 44194696 44194883 -108342376 - B3A SINE B2 -11 187 4 2 922 1113 181 16 0 chr5 44195295 44195483 -108341776 + B3 SINE B2 2 192 -24 3 922 297 248 192 64 chr5 44195552 44195631 -108341628 + ID_B1 SINE B4 82 167 -57 3 922 6509 48 23 8 chr5 44195631 44196427 -108340832 - RLTR13C2 LTR ERVK 0 808 1 3 922 297 248 192 64 chr5 44196427 44196472 -108340787 + ID_B1 SINE B4 168 222 -2 3 922 1637 164 35 109 chr5 44196588 44196992 -108340267 + ORR1D1 LTR MaLR 1 374 0 3 922 764 253 45 25 chr5 44197103 44197346 -108339913 - L1MA5 LINE L1 0 6300 6053 3 922 1027 30 0 0 chr5 44197367 44197498 -108339761 - B1_Mus2 SINE Alu -10 137 7 3 922 1371 275 159 26 chr5 44197808 44197922 -108339337 + Lx6 LINE L1 6794 6971 -489 3 922 621 0 0 0 chr5 44197922 44197991 -108339268 + (GGA)n Simple_repeat Simple_repeat 1 69 0 3 922 1371 275 159 26 chr5 44197991 44198441 -108338818 + Lx6 LINE L1 6972 7432 -28 3 922 1075 80 25 0 chr5 44198462 44198624 -108338635 + (GGGA)n Simple_repeat Simple_repeat 4 169 0 3 922 270 0 0 0 chr5 44198694 44198724 -108338535 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 922 470 241 98 0 chr5 44198733 44198845 -108338414 - B3A SINE B2 -56 142 20 3 922 242 29 29 0 chr5 44199983 44200018 -108337241 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 3 922 26 30 0 0 chr5 44200435 44200468 -108336791 + AT_rich Low_complexity Low_complexity 1 33 0 3 922 333 273 35 26 chr5 44200989 44201102 -108336157 + PB1D7 SINE Alu 2 115 -5 3 922 297 381 52 6 chr5 44201491 44201665 -108335594 + Charlie9 DNA MER1_type 89 270 -2487 3 922 331 302 84 28 chr5 44201871 44202100 -108335159 + RMER20B LTR ERVK 176 419 -208 3 922 10096 196 42 44 chr5 44202160 44203624 -108333635 + MERVK26-int LTR ERVK 946 2398 -4521 3 922 1870 172 161 23 chr5 44203624 44204016 -108333243 - RLTR41 LTR ERV1 0 446 1 3 922 10096 196 42 44 chr5 44204016 44204770 -108332489 + MERVK26-int LTR ERVK 2399 3161 -3758 3 922 12366 161 43 18 chr5 44204763 44206489 -108330770 + MERVK26-int LTR ERVK 4753 6525 -394 3 922 1188 56 7 0 chr5 44206489 44206633 -108330626 + B1_Mus2 SINE Alu 1 145 -2 3 922 212 59 29 0 chr5 44206633 44206667 -108330592 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 922 12366 161 43 18 chr5 44206667 44207053 -108330206 + MERVK26-int LTR ERVK 6526 6916 -3 3 922 428 320 82 63 chr5 44207134 44207451 -108329808 + RLTR26 LTR ERVK 95 417 -225 3 922 1431 242 99 6 chr5 44207766 44208232 -108329027 + Charlie9 DNA MER1_type 408 916 -1841 3 922 2103 299 26 24 chr5 44208266 44209095 -108328164 + Charlie9 DNA MER1_type 1001 1831 -926 3 922 953 108 24 6 chr5 44209136 44209303 -108327956 - L1_Mus3 LINE L1 -1 6637 6468 3 922 546 322 76 42 chr5 44209385 44209742 -108327517 - MLT1-int LTR MaLR -6 1365 997 3 922 261 0 0 0 chr5 44209898 44209927 -108327332 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 922 466 133 22 0 chr5 44211150 44211240 -108326019 + G-rich Low_complexity Low_complexity 1 92 0 3 922 474 18 0 0 chr5 44211406 44211461 -108325798 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 922 407 288 66 18 chr5 44211528 44211694 -108325565 - B4A SINE B4 -117 175 2 3 922 317 310 15 45 chr5 44212275 44212407 -108324852 - MIRc SINE MIR -118 150 23 3 922 913 153 191 0 chr5 44212459 44212648 -108324611 + URR1B DNA MER1_type 1 225 0 3 922 205 238 16 32 chr5 44213034 44213098 -108324161 - MIRc SINE MIR -47 221 162 3 922 1128 88 7 0 chr5 44214657 44214804 -108322455 - B1_Mus1 SINE Alu 0 148 1 3 922 243 336 9 17 chr5 44215079 44215194 -108322065 - MIR SINE MIR -134 128 15 3 922 244 288 137 0 chr5 44215566 44215639 -108321620 - ID4_ SINE ID 0 83 1 3 922 235 341 169 11 chr5 44215955 44216222 -108321037 + MLT1I LTR MaLR 102 410 -1 3 922 365 48 0 60 chr5 44216392 44216459 -108320800 + L1Md_F2 LINE L1 6520 6582 0 3 922 678 279 155 20 chr5 44216840 44217092 -108320167 + B4 SINE B4 5 290 -2 3 922 756 206 7 14 chr5 44217167 44217305 -108319954 - B1_Mur2 SINE Alu -12 137 1 3 922 457 239 72 0 chr5 44219486 44219624 -108317635 + Tigger7 DNA MER2_type 313 460 -2031 3 922 334 263 5 63 chr5 44219874 44220065 -108317194 + (CATA)n Simple_repeat Simple_repeat 1 180 0 3 922 1887 144 6 8 chr5 44220079 44220436 -108316823 - IAPLTR1_Mm LTR ERVK -11 356 1 3 922 50789 10 3 11 chr5 44220436 44226960 -108310299 - IAPEz-int LTR ERVK 0 6481 9 3 922 2086 123 41 44 chr5 44226960 44227326 -108309933 - IAPLTR1_Mm LTR ERVK -2 365 1 3 922 467 248 111 5 chr5 44227519 44227726 -108309533 - Tigger7 DNA MER2_type -75 2416 2188 3 922 1134 267 154 36 chr5 44227730 44228231 -108309028 - Tigger7 DNA MER2_type -1924 567 8 3 922 248 0 0 30 chr5 44228645 44228678 -108308581 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 922 445 268 21 0 chr5 44229278 44229375 -108307884 - PB1D9 SINE Alu -7 113 15 3 922 313 220 20 108 chr5 44229292 44229394 -108307865 - MT2B LTR ERVL -351 250 158 3 922 361 259 0 12 chr5 44230702 44230788 -108306471 + PB1 SINE Alu 37 121 -6 3 922 241 328 39 15 chr5 44231234 44231364 -108305895 + MIR SINE MIR 120 252 -10 3 922 828 161 0 28 chr5 44231384 44231525 -108305734 - B1_Mur3 SINE Alu -11 138 2 3 922 301 254 0 0 chr5 44232363 44232430 -108304829 + B3 SINE B2 39 105 -111 3 922 303 93 0 0 chr5 44233017 44233060 -108304199 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 922 384 271 123 33 chr5 44233971 44234319 -108302940 + L1ME1 LINE L1 5774 6149 -1636 3 922 415 244 0 0 chr5 44234789 44234875 -108302384 + B1_Mur2 SINE Alu 16 101 -48 3 922 185 0 40 0 chr5 44235000 44235025 -108302234 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 3 922 1207 68 0 0 chr5 44235025 44235172 -108302087 - B1_Mus1 SINE Alu 0 148 2 3 922 893 148 0 57 chr5 44235881 44236039 -108301220 - B1_Mur4 SINE Alu 0 150 2 3 922 234 0 0 0 chr5 44237472 44237498 -108299761 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 922 1220 303 69 45 chr5 44237809 44238299 -108298960 + Lx8 LINE L1 6827 7328 -145 3 922 740 91 0 9 chr5 44238299 44238410 -108298849 + (GAA)n Simple_repeat Simple_repeat 1 110 0 3 922 198 103 0 0 chr5 44238443 44238472 -108298787 + (GGA)n Simple_repeat Simple_repeat 2 30 0 3 922 257 292 77 22 chr5 44238511 44238602 -108298657 + RMER1C Other Other 1247 1342 0 3 922 1589 129 25 129 chr5 44238609 44238966 -108298293 - ORR1A4 LTR MaLR -9 320 1 3 922 347 303 49 1 chr5 44239029 44239140 -108298119 + MIR SINE MIR 1 113 -155 3 922 3357 33 5 8 chr5 44240337 44240734 -108296525 - MTA_Mm LTR MaLR 0 396 1 3 922 309 352 49 43 chr5 44242256 44242440 -108294819 + ORR1E LTR MaLR 1 185 -174 3 922 977 215 46 173 chr5 44242976 44243295 -108293964 + ORR1C1 LTR MaLR 1 266 -112 3 922 3494 60 40 35 chr5 44243295 44243775 -108293484 - RLTR45 LTR ERVK 0 482 1 3 922 977 215 46 173 chr5 44243775 44243888 -108293371 + ORR1C1 LTR MaLR 267 378 0 3 922 520 306 18 48 chr5 44244007 44244172 -108293087 - RSINE1 SINE B4 -2 163 4 3 922 347 330 61 9 chr5 44244175 44244404 -108292855 + MER58B DNA MER1_type 73 313 -28 3 922 423 322 158 0 chr5 44245081 44245385 -108291874 + MER45R DNA Tip100 882 1233 -348 3 922 422 227 0 6 chr5 44245389 44245497 -108291762 + ORR1D2 LTR MaLR 1 105 -254 3 922 22 35 0 0 chr5 44245707 44245736 -108291523 + AT_rich Low_complexity Low_complexity 1 29 0 3 922 444 312 0 23 chr5 44245856 44245987 -108291272 + B1F SINE Alu 18 145 -4 3 922 774 0 0 0 chr5 44246783 44246869 -108290390 + (TTC)n Simple_repeat Simple_repeat 3 88 0 3 922 255 193 174 35 chr5 44246991 44247077 -108290182 + MER34A LTR ERV1 4 101 -470 3 922 550 128 9 64 chr5 44247307 44247416 -108289843 - B1_Mur3 SINE Alu -5 144 42 3 922 248 186 0 132 chr5 44247498 44247566 -108289693 - B1_Mus1 SINE Alu -88 60 2 3 922 257 260 115 91 chr5 44247574 44247739 -108289520 + LTR48 LTR ERV1 613 781 -6 3 922 4259 53 2 2 chr5 44248346 44248858 -108288401 + RLTR1B LTR ERV1 1 512 0 3 922 945 286 62 59 chr5 44248898 44249270 -108287989 - MTEa LTR MaLR -1 378 6 3 922 201 327 0 19 chr5 44249288 44249394 -108287865 + G-rich Low_complexity Low_complexity 1 104 0 3 922 294 250 48 36 chr5 44249415 44249498 -108287761 + L1MC2 LINE L1 6236 6319 -25 3 922 3405 55 42 10 chr5 44249545 44250026 -108287233 - LTRIS2 LTR ERV1 0 564 69 3 922 232 308 0 62 chr5 44251163 44251260 -108285999 + L2a LINE L2 2670 2760 -659 3 922 181 288 16 63 chr5 44251516 44251579 -108285680 + L2a LINE L2 2991 3050 -325 3 922 2224 124 99 8 chr5 44251827 44252202 -108285057 - RLTR9E LTR ERVK 0 409 1 3 922 1179 117 0 0 chr5 44252731 44252911 -108284348 + (TTC)n Simple_repeat Simple_repeat 1 180 0 3 922 337 127 11 54 chr5 44252911 44253003 -108284256 + CT-rich Low_complexity Low_complexity 3 90 0 3 922 356 71 18 0 chr5 44253009 44253065 -108284194 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 922 1031 273 30 10 chr5 44253068 44253371 -108283888 - Lx9 LINE L1 -174 7470 7162 3 922 369 0 0 0 chr5 44253418 44253459 -108283800 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 922 273 293 53 0 chr5 44253892 44253967 -108283292 + L2a LINE L2 3347 3425 -1 3 922 273 269 0 0 chr5 44254587 44254654 -108282605 + (TATG)n Simple_repeat Simple_repeat 2 68 0 3 922 422 283 35 35 chr5 44254784 44254957 -108282302 + B3A SINE B2 43 216 0 3 922 509 325 68 72 chr5 44255533 44255782 -108281477 + MTE2b LTR MaLR 36 283 -96 3 922 743 295 47 42 chr5 44256016 44256377 -108280882 + MLT1B LTR MaLR 22 384 -6 3 922 210 139 0 44 chr5 44256404 44256449 -108280810 + T-rich Low_complexity Low_complexity 4 46 0 3 922 180 229 80 67 chr5 44256633 44256708 -108280551 + L2 LINE L2 1495 1570 -1849 3 922 263 253 51 31 chr5 44256876 44256974 -108280285 - ORR1E LTR MaLR -2 377 278 3 922 183 42 0 0 chr5 44256991 44257015 -108280244 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 922 1252 41 0 0 chr5 44257035 44257181 -108280078 - B1_Mus2 SINE Alu 0 147 2 3 922 398 320 24 42 chr5 44257226 44257438 -108279821 - ORR1E LTR MaLR -149 210 3 3 922 201 74 0 0 chr5 44257488 44257515 -108279744 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 922 529 318 33 1 chr5 44257638 44257812 -108279447 + B3A SINE B2 1 188 -28 3 922 28 0 0 0 chr5 44257822 44257850 -108279409 + AT_rich Low_complexity Low_complexity 1 28 0 3 922 379 318 0 0 chr5 44258122 44258229 -108279030 + RSINE1 SINE B4 37 143 -22 3 922 414 0 0 0 chr5 44258235 44258281 -108278978 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 922 459 0 0 0 chr5 44258281 44258331 -108278928 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 922 3484 112 86 14 chr5 44258334 44258893 -108278366 + Lx3B LINE L1 6374 6972 -1 4 922 241 282 0 49 chr5 44259400 44259482 -108277777 - MIR SINE MIR -3 259 182 4 922 224 59 0 29 chr5 44259711 44259746 -108277513 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 4 922 330 220 10 89 chr5 44260839 44260953 -108276306 + B1F SINE Alu 40 144 -5 4 922 21 0 0 0 chr5 44260954 44260975 -108276284 + AT_rich Low_complexity Low_complexity 1 21 0 4 922 189 107 0 0 chr5 44261689 44261717 -108275542 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 922 408 325 94 16 chr5 44261732 44261860 -108275399 - RSINE1 SINE B4 -7 158 21 4 922 441 0 0 0 chr5 44261917 44261966 -108275293 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 922 307 240 27 0 chr5 44262020 44262095 -108275164 + ID4 SINE ID 1 77 -6 4 922 483 233 34 25 chr5 44262693 44262812 -108274447 - RSINE1 SINE B4 -43 122 3 4 922 208 280 13 13 chr5 44262833 44262909 -108274350 - L2a LINE L2 0 3426 3351 4 922 2135 141 54 6 chr5 44263029 44263379 -108273880 - ORR1B2 LTR MaLR 0 367 1 4 922 325 373 101 18 chr5 44263750 44264187 -108273072 - MLT1H-int LTR MaLR -887 522 50 4 922 207 0 0 0 chr5 44264214 44264237 -108273022 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 922 275 71 24 0 chr5 44264281 44264323 -108272936 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 922 505 234 102 35 chr5 44264351 44264577 -108272682 - MLT2D LTR ERVL -155 259 19 4 922 1160 68 7 0 chr5 44264612 44264758 -108272501 - B1_Mm SINE Alu 0 147 1 4 922 3061 29 0 0 chr5 44265416 44265762 -108271497 + ORR1A0 LTR MaLR 1 346 0 4 922 186 43 0 0 chr5 44265848 44265871 -108271388 + (TA)n Simple_repeat Simple_repeat 1 23 0 4 922 1378 211 66 54 chr5 44266042 44266096 -108271163 - ORR1D1 LTR MaLR -35 339 294 4 922 1042 201 198 32 chr5 44266096 44266409 -108270850 - ORR1B2 LTR MaLR -2 365 1 4 922 1378 211 66 54 chr5 44266409 44266689 -108270570 - ORR1D1 LTR MaLR -81 293 1 4 922 713 280 63 0 chr5 44266689 44266864 -108270395 - B4 SINE B4 -103 189 4 4 922 1217 92 31 31 chr5 44266880 44267071 -108270188 - B2_Mm2 SINE B2 -3 192 2 4 922 721 277 92 95 chr5 44267144 44267471 -108269788 + MTEb LTR MaLR 1 326 -53 4 922 818 285 9 26 chr5 44267510 44267709 -108269550 + MTE2b LTR MaLR 1 200 -179 4 922 324 0 0 0 chr5 44267709 44267745 -108269514 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 922 818 235 128 30 chr5 44267745 44267847 -108269412 + MTE2b LTR MaLR 201 372 -7 4 922 270 292 37 9 chr5 44268863 44268970 -108268289 + MTEa LTR MaLR 267 376 -3 4 922 272 324 0 0 chr5 44270168 44270242 -108267017 - MER2B DNA MER2_type -262 74 1 4 922 224 301 48 16 chr5 44270275 44270400 -108266859 - L2a LINE L2 -71 3355 3227 4 922 293 224 133 95 chr5 44270758 44270916 -108266343 - RSINE1 SINE B4 0 165 2 4 922 306 152 0 0 chr5 44271187 44271246 -108266013 + T-rich Low_complexity Low_complexity 1 59 0 4 922 1046 82 14 7 chr5 44271246 44271393 -108265866 - B1_Mus1 SINE Alu 0 148 1 4 922 718 294 0 58 chr5 44272354 44272560 -108264699 - B3A SINE B2 -2 196 3 4 922 203 296 11 22 chr5 44273073 44273163 -108264096 + L2 LINE L2 2032 2120 -1299 4 922 385 309 58 64 chr5 44273167 44273496 -108263763 + L2 LINE L2 2321 2647 -772 4 922 230 250 15 77 chr5 44273530 44273595 -108263664 + PB1D10 SINE Alu 48 108 -9 4 922 262 225 127 0 chr5 44273595 44273666 -108263593 + L2 LINE L2 2639 2718 -701 4 922 344 167 41 14 chr5 44274095 44274168 -108263091 - MTD LTR MaLR 0 419 345 4 922 1211 108 48 11 chr5 44274813 44275000 -108262259 + B2_Mm2 SINE B2 2 195 0 4 922 1226 243 68 49 chr5 44275120 44275531 -108261728 - MTD LTR MaLR 0 419 1 4 922 492 18 0 0 chr5 44275631 44275688 -108261571 + (TC)n Simple_repeat Simple_repeat 1 57 0 4 922 279 0 0 0 chr5 44275688 44275718 -108261541 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 922 446 317 71 11 chr5 44277032 44277214 -108260045 - MLT1C LTR MaLR -4 463 271 4 922 276 30 0 0 chr5 44277304 44277337 -108259922 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 4 922 242 252 10 0 chr5 44277338 44277437 -108259822 + (TG)n Simple_repeat Simple_repeat 1 100 0 4 922 759 225 152 4 chr5 44277446 44277696 -108259563 - B4A SINE B4 -5 287 1 4 922 381 43 0 0 chr5 44278002 44278049 -108259210 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 922 300 250 86 11 chr5 44278054 44278147 -108259112 - MLT1C LTR MaLR -367 100 1 4 922 379 345 121 57 chr5 44278152 44278524 -108258735 - MLT1L LTR MaLR 0 610 215 4 922 515 276 69 72 chr5 44279560 44279865 -108257394 - RLTR26 LTR ERVK -225 417 114 4 922 317 263 87 36 chr5 44279980 44280118 -108257141 + B4A SINE B4 106 250 -42 4 922 662 290 47 28 chr5 44280229 44280484 -108256775 - L1ME1 LINE L1 -348 5831 5572 4 922 851 237 77 10 chr5 44280749 44280958 -108256301 + ID_B1 SINE B4 2 224 0 4 922 403 189 0 39 chr5 44281938 44282065 -108255194 + CT-rich Low_complexity Low_complexity 2 123 0 4 922 248 216 0 63 chr5 44282074 44282153 -108255106 - ID_B1 SINE B4 0 224 151 4 922 474 139 48 15 chr5 44282082 44282187 -108255072 - B1_Mus2 SINE Alu -6 141 1 4 922 5952 106 54 0 chr5 44282783 44283669 -108253590 - Lx2 LINE L1 -1 6996 6063 4 922 3751 258 63 63 chr5 44284089 44285247 -108252012 + Lx5 LINE L1 5855 7012 -38 4 922 1284 125 35 53 chr5 44286134 44286362 -108250897 + URR1A DNA MER1_type 1 224 -2 4 922 360 299 127 42 chr5 44286471 44286803 -108250456 - MER90a LTR ERV1 -146 468 109 4 922 225 397 53 53 chr5 44287219 44287408 -108249851 + LTR80A LTR ERVL 373 561 -22 4 922 301 260 79 10 chr5 44287589 44287690 -108249569 + L1MB3 LINE L1 5733 5840 -343 4 922 1185 205 80 59 chr5 44287690 44288048 -108249211 + ORR1D1 LTR MaLR 2 354 -20 4 922 385 219 203 0 chr5 44288059 44288187 -108249072 + L1MB3 LINE L1 5859 6012 -171 4 922 278 279 29 0 chr5 44288243 44288311 -108248948 + ID4 SINE ID 4 73 -10 4 922 621 0 0 0 chr5 44288312 44288381 -108248878 + (CAAAA)n Simple_repeat Simple_repeat 3 71 0 4 922 197 65 32 0 chr5 44288843 44288874 -108248385 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 922 3342 221 70 100 chr5 44288979 44290002 -108247257 + RMER1B Other Other 57 1049 -17 4 922 197 65 32 0 chr5 44290775 44290806 -108246453 + (TGGGGG)n Simple_repeat Simple_repeat 3 34 0 4 922 551 253 66 6 chr5 44290877 44291044 -108246215 - L1MA5 LINE L1 -6 6294 6118 4 922 22 35 0 0 chr5 44291338 44291367 -108245892 + AT_rich Low_complexity Low_complexity 1 29 0 4 922 419 256 76 15 chr5 44291377 44291508 -108245751 - B3 SINE B2 0 216 78 4 922 410 0 20 0 chr5 44292478 44292528 -108244731 + (TATG)n Simple_repeat Simple_repeat 3 53 0 4 922 336 276 13 0 chr5 44292535 44292611 -108244648 - ID4_ SINE ID -5 78 2 4 922 280 343 19 0 chr5 44293317 44293422 -108243837 + CT-rich Low_complexity Low_complexity 2 108 0 4 922 324 0 0 0 chr5 44293469 44293505 -108243754 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 922 43 0 0 0 chr5 44293535 44293578 -108243681 + AT_rich Low_complexity Low_complexity 1 43 0 4 922 372 200 0 0 chr5 44294206 44294291 -108242968 + (TATATG)n Simple_repeat Simple_repeat 1 85 0 4 922 509 221 321 12 chr5 44295347 44295512 -108241747 - B3 SINE B2 0 216 1 4 922 393 176 0 0 chr5 44297153 44297227 -108240032 + CT-rich Low_complexity Low_complexity 2 75 0 4 922 783 171 26 40 chr5 44297231 44297383 -108239876 - B1_Mur4 SINE Alu 0 150 1 4 922 285 37 18 53 chr5 44300065 44300122 -108237137 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 4 922 856 172 56 152 chr5 44300341 44300697 -108236562 - RLTRETN_Mm LTR ERVK 0 322 1 4 922 396 0 0 0 chr5 44301216 44301260 -108235999 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 4 922 438 69 0 0 chr5 44301261 44301319 -108235940 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 922 594 280 7 13 chr5 44301325 44301477 -108235782 - RSINE1 SINE B4 -12 153 3 4 922 290 26 26 0 chr5 44301861 44301900 -108235359 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 922 232 279 0 42 chr5 44301906 44301977 -108235282 - ID4 SINE ID -12 71 4 4 922 429 70 0 0 chr5 44302225 44302282 -108234977 + (TTTTC)n Simple_repeat Simple_repeat 2 58 0 4 923 268 226 162 129 chr5 44302596 44302956 -108234303 - L1M5 LINE L1 -2849 3297 2947 4 923 2248 118 12 3 chr5 44302956 44303278 -108233981 + ORR1A2 LTR MaLR 3 327 0 4 923 268 226 162 129 chr5 44303278 44303375 -108233884 - L1M5 LINE L1 -3200 2946 2825 4 923 411 186 163 0 chr5 44303652 44303738 -108233521 + B1_Mur4 SINE Alu 39 138 -12 4 923 189 0 0 0 chr5 44303774 44303795 -108233464 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 4 923 405 70 0 0 chr5 44304190 44304247 -108233012 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 923 369 0 0 0 chr5 44304247 44304287 -108232972 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 923 457 226 11 0 chr5 44304292 44304385 -108232874 - MT2A LTR ERVL -118 483 390 4 923 278 26 0 25 chr5 44305139 44305179 -108232080 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 923 548 196 81 22 chr5 44305196 44305222 -108232037 - MT2A LTR ERVL -298 235 210 4 923 258 32 0 0 chr5 44305222 44305253 -108232006 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 923 548 196 81 22 chr5 44305253 44305362 -108231897 - MT2A LTR ERVL -324 209 92 4 923 568 208 0 8 chr5 44305359 44305394 -108231865 - MT2A LTR ERVL -404 129 95 4 923 222 37 0 0 chr5 44305394 44305421 -108231838 + (TAA)n Simple_repeat Simple_repeat 1 27 0 4 923 568 208 0 8 chr5 44305421 44305511 -108231748 - MT2A LTR ERVL -439 94 6 4 923 234 0 0 0 chr5 44305941 44305967 -108231292 + (T)n Simple_repeat Simple_repeat 1 26 0 4 923 1142 88 0 0 chr5 44305967 44306114 -108231145 - B1_Mus1 SINE Alu 0 148 2 4 923 1915 92 11 4 chr5 44306116 44306388 -108230871 + L1_Mus3 LINE L1 6359 6632 -6 4 923 989 123 18 0 chr5 44306580 44306743 -108230516 - URR1A DNA MER1_type 0 226 61 5 923 432 229 0 0 chr5 44307689 44307772 -108229487 - B1F1 SINE Alu -61 88 6 5 923 1483 73 5 0 chr5 44309471 44309663 -108227596 - B2_Mm1a SINE B2 0 193 1 5 923 210 244 0 0 chr5 44309841 44309882 -108227377 + polypyrimidine Low_complexity Low_complexity 1 41 0 5 923 21 0 0 0 chr5 44310040 44310061 -108227198 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 597 318 20 36 chr5 44310763 44311014 -108226245 + MTD LTR MaLR 28 274 -145 5 923 668 241 0 7 chr5 44311065 44311203 -108226056 + MTD LTR MaLR 268 404 -15 5 923 21 0 0 0 chr5 44311212 44311233 -108226026 + AT_rich Low_complexity Low_complexity 1 21 0 5 923 1287 210 167 36 chr5 44312758 44313414 -108223845 + RMER17B LTR ERVK 1 804 -104 5 923 33 0 0 0 chr5 44313417 44313450 -108223809 + AT_rich Low_complexity Low_complexity 1 33 0 5 923 1223 54 0 0 chr5 44313482 44313629 -108223630 + B1_Mus1 SINE Alu 2 148 0 5 923 214 178 0 0 chr5 44313708 44313753 -108223506 + T-rich Low_complexity Low_complexity 2 46 0 5 923 1418 44 60 0 chr5 44313957 44314139 -108223120 - B2_Mm1a SINE B2 0 193 1 5 923 195 42 0 0 chr5 44315598 44315622 -108221637 + (A)n Simple_repeat Simple_repeat 1 24 0 5 923 1122 69 7 0 chr5 44315624 44315769 -108221490 + B1_Mus1 SINE Alu 2 147 -1 5 923 198 0 0 0 chr5 44315779 44315801 -108221458 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 5 923 319 326 82 72 chr5 44315869 44316077 -108221182 - MLT1J LTR MaLR -187 325 116 5 923 2648 73 101 5 chr5 44316108 44316493 -108220766 + BGLII_Mus LTR ERVK 1 422 0 5 923 348 83 0 0 chr5 44316821 44316869 -108220390 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 5 923 296 146 0 0 chr5 44317818 44317866 -108219393 - B1_Mus2 SINE Alu -24 123 76 5 923 275 295 137 0 chr5 44318051 44318146 -108219113 + ID_B1 SINE B4 117 224 0 5 923 698 214 57 7 chr5 44318626 44318767 -108218492 + B1_Mur1 SINE Alu 2 149 0 5 923 1032 239 176 15 chr5 44319125 44319643 -108217616 + RMER20B LTR ERVK 1 602 -25 5 923 2143 160 152 12 chr5 44319740 44320169 -108217090 + L1_Mur2 LINE L1 5075 5563 -314 5 923 4106 187 63 27 chr5 44320188 44320702 -108216557 + Lx5 LINE L1 6195 6733 -317 5 923 468 0 0 0 chr5 44320702 44320754 -108216505 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 923 4106 187 63 27 chr5 44320754 44321065 -108216194 + Lx5 LINE L1 6734 7049 -1 5 923 240 35 0 0 chr5 44321067 44321096 -108216163 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 5 923 295 348 18 9 chr5 44322435 44322479 -108214780 + L2a LINE L2 3309 3353 -73 5 923 1356 90 11 0 chr5 44322479 44322667 -108214592 - B2_Mm1t SINE B2 -3 190 1 5 923 295 348 18 9 chr5 44322667 44322735 -108214524 + L2a LINE L2 3354 3422 -4 5 923 296 253 12 48 chr5 44323140 44323223 -108214036 + Tigger5 DNA MER2_type 13 92 -2314 5 923 283 262 31 5 chr5 44323385 44323503 -108213756 + MIRm SINE MIR 83 199 -9 5 923 216 86 0 0 chr5 44323567 44323602 -108213657 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 923 1451 79 16 5 chr5 44324106 44324296 -108212963 - B2_Mm2 SINE B2 -3 192 1 5 923 2119 111 9 100 chr5 44324661 44325112 -108212147 + RMER17C LTR ERVK 1 410 0 5 923 666 265 78 2 chr5 44325790 44325986 -108211273 - B3A SINE B2 -2 214 1 5 923 27 29 0 0 chr5 44326030 44326064 -108211195 + AT_rich Low_complexity Low_complexity 1 34 0 5 923 586 101 11 0 chr5 44326750 44326839 -108210420 + B1_Mus2 SINE Alu 46 135 -12 5 923 342 0 0 0 chr5 44326839 44326877 -108210382 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 5 923 193 102 0 58 chr5 44327654 44327706 -108209553 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 5 923 414 296 0 0 chr5 44328318 44328426 -108208833 + MTEa LTR MaLR 8 115 -264 5 923 241 336 72 16 chr5 44328574 44328825 -108208434 + HAL1 LINE L1 1151 1415 -1092 5 923 669 25 0 0 chr5 44329094 44329173 -108208086 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 5 923 651 60 0 0 chr5 44329177 44329261 -108207998 + (TC)n Simple_repeat Simple_repeat 2 85 0 5 923 1255 344 71 10 chr5 44329903 44330520 -108206739 - MTE-int LTR MaLR -122 1458 804 5 923 430 207 144 61 chr5 44330830 44331010 -108206249 + B4A SINE B4 82 276 -16 5 923 450 0 0 0 chr5 44331014 44331064 -108206195 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 923 399 308 38 0 chr5 44331498 44331631 -108205628 - B1F SINE Alu -9 140 3 5 923 766 207 40 11 chr5 44332019 44332195 -108205064 + MTE2a LTR MaLR 191 371 -8 5 923 239 294 54 11 chr5 44333003 44333096 -108204163 - MLT1E2 LTR MaLR -107 398 302 5 923 289 317 34 79 chr5 44333166 44333344 -108203915 - MLT1E2 LTR MaLR -451 176 7 5 923 261 322 129 9 chr5 44333571 44333687 -108203572 + ORR1E LTR MaLR 1 130 -229 5 923 327 104 0 0 chr5 44333698 44333746 -108203513 + (TCTCC)n Simple_repeat Simple_repeat 2 49 0 5 923 615 92 0 0 chr5 44334352 44334439 -108202820 + (TA)n Simple_repeat Simple_repeat 2 88 0 5 923 874 159 0 7 chr5 44334534 44334673 -108202586 + B1_Mus1 SINE Alu 3 140 -8 5 923 636 50 0 0 chr5 44334973 44335053 -108202206 + (TTTTC)n Simple_repeat Simple_repeat 4 83 0 5 923 297 75 0 0 chr5 44335054 44335094 -108202165 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 923 2432 206 32 33 chr5 44335842 44336411 -108200848 + Lx7 LINE L1 7128 7695 -1 5 923 989 227 49 0 chr5 44336430 44336633 -108200626 + B3 SINE B2 4 216 0 5 923 487 247 6 158 chr5 44337245 44337378 -108199881 + RSINE1 SINE B4 11 138 -27 5 923 396 40 0 0 chr5 44337378 44337428 -108199831 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 923 487 247 6 158 chr5 44337428 44337477 -108199782 + RSINE1 SINE B4 139 165 0 5 923 420 55 0 0 chr5 44338363 44338418 -108198841 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 923 399 21 0 0 chr5 44338413 44338461 -108198798 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 923 184 284 67 13 chr5 44339756 44339831 -108197428 - MIR SINE MIR -79 183 105 5 923 270 0 0 0 chr5 44339918 44339948 -108197311 + (T)n Simple_repeat Simple_repeat 1 30 0 5 923 294 232 49 69 chr5 44339971 44340073 -108197186 + PB1D10 SINE Alu 17 116 -1 5 923 228 217 22 0 chr5 44340347 44340393 -108196866 + C-rich Low_complexity Low_complexity 5 51 0 5 923 725 178 20 0 chr5 44340767 44340919 -108196340 - URR1A DNA MER1_type 0 226 72 5 923 1433 281 23 9 chr5 44341018 44341409 -108195850 - MTD LTR MaLR -26 393 15 5 923 504 62 37 0 chr5 44341431 44341512 -108195747 + (GAAA)n Simple_repeat Simple_repeat 2 85 0 5 923 839 302 87 41 chr5 44341609 44342071 -108195188 + MLT1D LTR MaLR 10 492 -13 5 923 1465 210 140 30 chr5 44343216 44343623 -108193636 + RLTR33 LTR ERVK 175 626 -52 5 923 635 262 46 71 chr5 44343835 44344185 -108193074 + RLTR15 LTR ERVK 1 341 -18 5 923 230 326 0 11 chr5 44344222 44344315 -108192944 + BC1_Mm scRNA scRNA 8 99 -53 5 923 277 109 0 35 chr5 44344327 44344384 -108192875 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 5 923 230 338 0 0 chr5 44344504 44344581 -108192678 - LTR84a LTR ERVL -49 708 632 5 923 276 289 38 76 chr5 44344653 44344671 -108192588 - MER74A LTR ERVL -3 555 540 5 923 578 275 177 28 chr5 44344671 44344912 -108192347 + B4A SINE B4 1 281 -11 5 923 387 0 0 0 chr5 44344912 44344955 -108192304 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 923 578 275 177 28 chr5 44344955 44344967 -108192292 + B4A SINE B4 282 292 0 5 923 276 284 202 22 chr5 44344967 44345085 -108192174 - MER74A LTR ERVL -28 594 455 5 923 1176 230 176 3 chr5 44345085 44345442 -108191817 + MTD LTR MaLR 1 419 0 5 923 248 0 31 0 chr5 44346033 44346065 -108191194 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 5 923 899 135 190 10 chr5 44346066 44346261 -108190998 - RMER5 LTR ERV1 -18 516 287 5 923 3826 107 89 2 chr5 44346359 44346912 -108190347 - MT2B LTR ERVL 0 601 1 5 923 638 281 59 25 chr5 44346912 44347149 -108190110 - MER2 DNA MER2_type -9 336 92 5 923 806 179 163 0 chr5 44347343 44347527 -108189732 + ID_B1 SINE B4 1 214 -10 5 923 351 0 0 0 chr5 44347527 44347566 -108189693 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 923 2088 104 27 57 chr5 44347660 44347996 -108189263 + ORR1A4 LTR MaLR 1 326 -3 5 923 1190 119 21 26 chr5 44348817 44349007 -108188252 - B2_Mm2 SINE B2 -6 189 1 5 923 253 259 70 12 chr5 44349209 44349339 -108187920 + MTE2a LTR MaLR 1 139 -282 5 923 276 130 0 0 chr5 44349649 44349695 -108187564 + (AGGGGG)n Simple_repeat Simple_repeat 2 47 0 5 923 3327 21 10 0 chr5 44350255 44350639 -108186620 + RLTR10 LTR ERVK 1 388 -2 5 923 2201 31 2 0 chr5 44350641 44350902 -108186357 + RLTR10-int LTR ERVK 1 291 -1696 5 923 208 333 47 64 chr5 44351823 44352057 -108185202 + L2 LINE L2 2274 2503 -916 5 923 919 214 84 10 chr5 44352630 44352833 -108184426 + URR1B DNA MER1_type 7 224 -1 5 923 575 155 0 10 chr5 44352939 44353037 -108184222 - MTC LTR MaLR 0 421 325 5 923 3325 62 0 0 chr5 44353038 44353438 -108183821 + MTB LTR MaLR 1 400 0 5 923 7619 82 30 35 chr5 44353438 44354542 -108182717 + MTB-int LTR MaLR 1 1098 0 5 923 3093 40 42 8 chr5 44354542 44354925 -108182334 + MTB LTR MaLR 1 396 0 5 923 2917 296 20 64 chr5 44354978 44356234 -108181025 + ETnERV-int LTR ERVK 585 2519 -3289 5 923 4639 115 10 3 chr5 44358305 44358978 -108178281 + RLTR33 LTR ERVK 1 678 0 5 923 270 136 0 0 chr5 44359450 44359494 -108177765 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 5 923 24 0 0 0 chr5 44359566 44359590 -108177669 + AT_rich Low_complexity Low_complexity 1 24 0 5 923 666 197 91 0 chr5 44359696 44359828 -108177431 - B1_Mur1 SINE Alu 0 149 6 5 923 544 242 38 69 chr5 44359833 44359982 -108177277 - ID_B1 SINE B4 -43 181 42 5 923 617 259 198 29 chr5 44360031 44360345 -108176914 + RLTR9A LTR ERVK 2 368 0 5 923 492 153 0 0 chr5 44360393 44360478 -108176781 + CT-rich Low_complexity Low_complexity 3 87 0 5 923 672 13 0 0 chr5 44360705 44360782 -108176477 + (GGGA)n Simple_repeat Simple_repeat 1 77 0 6 923 310 270 339 0 chr5 44361081 44361214 -108176045 + B4 SINE B4 1 178 -114 6 923 356 305 110 15 chr5 44362362 44362562 -108174697 + MER20 DNA MER1_type 1 219 0 6 923 248 367 10 0 chr5 44362576 44362674 -108174585 - L2b LINE L2 -19 3356 3258 6 923 204 378 0 0 chr5 44363133 44363223 -108174036 + CT-rich Low_complexity Low_complexity 1 90 0 6 923 184 296 72 27 chr5 44363304 44363415 -108173844 + MIR SINE MIR 10 125 -137 6 923 194 328 15 67 chr5 44364456 44364590 -108172669 - MIRb SINE MIR -135 133 7 6 923 392 337 67 72 chr5 44365053 44365456 -108171803 - L2b LINE L2 -508 2911 2511 6 923 203 0 37 0 chr5 44366189 44366216 -108171043 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 923 369 0 0 0 chr5 44366221 44366262 -108170997 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 923 865 126 96 0 chr5 44366278 44366413 -108170846 - B1_Mus1 SINE Alu 0 148 1 6 923 238 386 0 60 chr5 44366960 44366985 -108170274 + ID_B1 SINE B4 79 218 -6 6 923 400 293 24 8 chr5 44366985 44367109 -108170150 + B1F SINE Alu 18 143 -6 6 923 267 79 0 0 chr5 44367482 44367520 -108169739 + (A)n Simple_repeat Simple_repeat 1 38 0 6 923 267 349 26 26 chr5 44367536 44367689 -108169570 - ORR1E LTR MaLR -206 153 1 6 923 266 250 0 22 chr5 44368360 44368450 -108168809 + T-rich Low_complexity Low_complexity 2 89 0 6 923 653 299 20 10 chr5 44368556 44368759 -108168500 - Lx8 LINE L1 -190 7283 7079 6 923 592 234 175 12 chr5 44369155 44369315 -108167944 - B3 SINE B2 -1 215 30 6 923 373 286 0 63 chr5 44372699 44372826 -108164433 + RSINE1 SINE B4 2 120 -45 6 923 213 132 0 0 chr5 44374930 44374968 -108162291 + (TGG)n Simple_repeat Simple_repeat 3 40 0 6 923 390 21 0 0 chr5 44375178 44375225 -108162034 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 923 219 333 34 11 chr5 44375689 44375777 -108161482 - MIRm SINE MIR -15 261 172 6 923 548 216 10 72 chr5 44375961 44376156 -108161103 - L1M2 LINE L1 -792 5351 5169 6 923 337 198 97 70 chr5 44376184 44376298 -108160961 - HERVL74-int LTR ERVL -1659 4026 3910 6 923 1868 337 35 23 chr5 44376437 44377230 -108160029 - HERVL74-int LTR ERVL -2345 3340 2538 6 923 1053 283 137 33 chr5 44377438 44377950 -108159309 - L1MA4 LINE L1 -278 6022 5472 6 923 1809 119 35 90 chr5 44377950 44378384 -108158875 - RMER17C LTR ERVK 0 410 1 6 923 1053 288 106 35 chr5 44378384 44378635 -108158624 - L1MA4 LINE L1 -829 5471 5189 6 923 389 188 0 12 chr5 44379227 44379313 -108157946 + CT-rich Low_complexity Low_complexity 4 88 0 6 923 218 193 18 0 chr5 44379318 44379375 -108157884 + T-rich Low_complexity Low_complexity 1 58 0 6 923 367 309 0 9 chr5 44379377 44379485 -108157774 + CT-rich Low_complexity Low_complexity 4 110 0 6 923 983 81 0 14 chr5 44380822 44380960 -108156299 - B1_Mm SINE Alu -2 145 10 6 923 329 348 43 14 chr5 44380965 44381105 -108156154 - MER74A LTR ERVL -404 154 11 6 923 537 192 195 20 chr5 44381117 44381266 -108155993 + B4A SINE B4 3 177 -115 6 923 435 306 74 12 chr5 44381376 44381538 -108155721 - HERVL74-int LTR ERVL -3555 2112 1941 6 923 1171 197 35 0 chr5 44382702 44382905 -108154354 - B3 SINE B2 -6 210 1 6 923 210 200 20 0 chr5 44382955 44383005 -108154254 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 6 923 363 261 56 50 chr5 44383570 44383731 -108153528 - MER5B DNA MER1_type -10 168 7 6 923 380 264 99 25 chr5 44383823 44384025 -108153234 + L1M3 LINE L1 5279 5495 -685 6 923 237 286 25 38 chr5 44384376 44384456 -108152803 - PB1D10 SINE Alu -27 90 12 6 923 407 236 27 7 chr5 44387216 44387347 -108149912 + B1F SINE Alu 1 136 -12 6 923 1390 236 20 23 chr5 44387369 44387716 -108149543 + MTEb LTR MaLR 13 358 -21 6 923 217 275 125 25 chr5 44388462 44388615 -108148644 - MIRc SINE MIR -66 202 29 6 923 392 260 29 99 chr5 44389569 44389740 -108147519 - RMER30 DNA MER1_type -39 163 5 6 923 643 253 38 21 chr5 44390753 44390939 -108146320 + MLT1A0 LTR MaLR 176 364 -1 6 923 519 164 0 0 chr5 44391554 44391658 -108145601 + GA-rich Low_complexity Low_complexity 2 105 0 6 923 27 0 0 0 chr5 44392472 44392499 -108144760 + AT_rich Low_complexity Low_complexity 1 27 0 6 923 2617 154 78 22 chr5 44393461 44393960 -108143299 + RLTR11A2 LTR ERVK 1 527 0 6 923 1035 70 0 0 chr5 44394420 44394554 -108142705 + B1_Mus1 SINE Alu 6 139 -9 6 923 207 0 0 0 chr5 44394554 44394577 -108142682 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 923 2636 303 89 23 chr5 44394589 44395681 -108141578 + Lx8 LINE L1 6174 7337 -136 6 923 1370 85 21 0 chr5 44395688 44395877 -108141382 + B2_Mm1t SINE B2 1 193 0 6 923 191 333 53 43 chr5 44396398 44396492 -108140767 + MIRb SINE MIR 102 196 -72 6 923 783 135 140 50 chr5 44397517 44397696 -108139563 + URR1A DNA MER1_type 1 195 -31 6 923 2030 137 9 94 chr5 44397696 44398131 -108139128 + RMER10B LTR ERVL 1 398 0 6 923 269 56 0 0 chr5 44398131 44398167 -108139092 + URR1A DNA MER1_type 190 225 -1 6 923 411 179 32 8 chr5 44398644 44398768 -108138491 + CT-rich Low_complexity Low_complexity 3 129 0 6 923 319 234 13 0 chr5 44398777 44398854 -108138405 - ID4_ SINE ID -5 78 1 6 923 1300 67 67 6 chr5 44398876 44399056 -108138203 + B2_Mm2 SINE B2 2 192 -3 6 923 7719 66 34 3 chr5 44399366 44400358 -108136901 + RLTR13D5 LTR ERVK 1 1023 0 6 923 547 289 25 20 chr5 44401042 44401240 -108136019 + MER2 DNA MER2_type 95 293 -52 6 923 1244 142 24 139 chr5 44401472 44401766 -108135493 + ORR1D1 LTR MaLR 1 260 -114 6 923 1267 117 21 5 chr5 44401835 44402024 -108135235 + B2_Mm2 SINE B2 3 194 -1 6 923 610 82 20 10 chr5 44402026 44402124 -108135135 + (GAAAA)n Simple_repeat Simple_repeat 3 101 0 6 923 284 293 171 0 chr5 44402810 44402950 -108134309 - MER58A DNA MER1_type -11 213 50 6 923 470 302 30 30 chr5 44404562 44404726 -108132533 - MIR SINE MIR -88 180 17 6 923 419 223 17 22 chr5 44404864 44405043 -108132216 + (TATG)n Simple_repeat Simple_repeat 2 179 0 6 923 184 215 0 44 chr5 44405047 44405115 -108132144 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 6 923 415 293 181 20 chr5 44405599 44405902 -108131357 + L1MB7 LINE L1 5802 6153 -31 6 923 748 194 416 23 chr5 44409155 44409453 -108127806 + RLTR20C LTR ERVK 1 417 -117 6 923 248 167 18 18 chr5 44409449 44409504 -108127755 + RLTR16 LTR ERVK 451 505 0 6 923 609 186 17 0 chr5 44409967 44410085 -108127174 + PB1D9 SINE Alu 1 120 0 6 923 6881 36 4 4 chr5 44410365 44411196 -108126063 - L1Md_F3 LINE L1 -2 6582 5752 6 923 714 268 77 18 chr5 44411347 44411621 -108125638 + B4A SINE B4 3 292 0 6 923 555 78 0 0 chr5 44411833 44411910 -108125349 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 923 582 15 0 0 chr5 44412428 44412495 -108124764 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 6 923 286 301 0 0 chr5 44412547 44412610 -108124649 + MTE2b LTR MaLR 20 82 -297 6 923 789 251 37 0 chr5 44412610 44412801 -108124458 - ORR1D2 LTR MaLR 0 370 173 6 923 249 297 0 0 chr5 44413021 44413095 -108124164 + RLTR15 LTR ERVK 48 121 -238 6 923 756 161 13 13 chr5 44413303 44413454 -108123805 - ORR1D2 LTR MaLR -209 165 15 6 923 898 296 71 0 chr5 44413435 44413749 -108123510 + MTE2b LTR MaLR 46 379 0 6 923 199 342 62 48 chr5 44414256 44414465 -108122794 - L2 LINE L2 -1143 2276 2065 6 923 201 182 0 22 chr5 44414886 44414931 -108122328 + GA-rich Low_complexity Low_complexity 5 48 0 6 923 317 259 12 12 chr5 44414975 44415057 -108122202 + ID4 SINE ID 2 83 0 6 923 304 169 0 101 chr5 44415306 44415385 -108121874 - B1_Mur3 SINE Alu 0 149 79 6 923 285 140 0 0 chr5 44416688 44416745 -108120514 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 6 923 1147 69 0 0 chr5 44416909 44417054 -108120205 + B1_Mus1 SINE Alu 1 145 -3 6 923 2962 67 36 3 chr5 44418185 44418572 -108118687 + MTB LTR MaLR 1 400 0 6 923 815 237 27 120 chr5 44420404 44420696 -108116563 - B4A SINE B4 -23 269 5 6 923 337 312 31 0 chr5 44421497 44421593 -108115666 + B1F2 SINE Alu 4 102 -47 6 923 239 255 20 33 chr5 44421618 44421713 -108115546 + GA-rich Low_complexity Low_complexity 1 93 0 6 923 875 141 0 47 chr5 44421791 44421940 -108115319 + B1_Mur4 SINE Alu 2 143 -7 6 923 234 0 0 0 chr5 44421958 44421984 -108115275 + (TAA)n Simple_repeat Simple_repeat 2 27 0 6 923 25 0 0 0 chr5 44422890 44422915 -108114344 + AT_rich Low_complexity Low_complexity 1 25 0 6 923 1208 155 29 10 chr5 44423256 44423464 -108113795 - B3 SINE B2 0 216 5 6 923 236 293 40 0 chr5 44424408 44424483 -108112776 - ID2 SINE ID -1 82 5 6 923 1177 56 0 0 chr5 44424524 44424666 -108112593 - B1_Mm SINE Alu -4 143 2 6 923 3266 29 39 0 chr5 44424837 44425218 -108112041 + MTA_Mm LTR MaLR 1 396 0 6 923 234 0 0 0 chr5 44425725 44425751 -108111508 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 923 300 328 81 24 chr5 44426226 44426435 -108110824 + L1MC4 LINE L1 7436 7656 -386 6 923 756 203 16 21 chr5 44426451 44426637 -108110622 + RMER12 LTR ERVK 1 185 -1137 6 923 806 262 27 46 chr5 44426656 44426916 -108110343 + RMER12 LTR ERVK 1059 1313 -9 6 923 1248 244 92 19 chr5 44427201 44427569 -108109690 + MTD LTR MaLR 11 405 -14 6 923 443 321 46 28 chr5 44427644 44427835 -108109424 + ID_B1 SINE B4 69 264 -28 6 923 27 29 0 0 chr5 44428019 44428053 -108109206 + AT_rich Low_complexity Low_complexity 1 34 0 6 923 611 280 33 28 chr5 44428180 44428360 -108108899 - B3A SINE B2 -16 182 2 6 923 439 262 84 0 chr5 44429290 44429397 -108107862 + RSINE1 SINE B4 5 120 -45 6 923 281 253 0 78 chr5 44429549 44429626 -108107633 + ORR1D2-int LTR MaLR 1006 1075 -295 6 923 1917 172 134 61 chr5 44429626 44429726 -108107533 + RLTR31A_Mm LTR ERVK 1 102 -482 7 923 258 32 0 0 chr5 44429726 44429757 -108107502 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 923 1917 172 134 61 chr5 44429757 44430200 -108107059 + RLTR31A_Mm LTR ERVK 103 583 -1 7 923 1151 171 73 86 chr5 44430200 44430501 -108106758 + ORR1D2-int LTR MaLR 1074 1370 0 6 923 524 248 337 76 chr5 44430501 44430789 -108106470 + ORR1D2 LTR MaLR 4 366 -4 6 923 5435 95 21 1 chr5 44430973 44431721 -108105538 + Lx2 LINE L1 5597 6359 -638 7 923 1180 176 13 13 chr5 44431721 44431952 -108105307 - RLTRETN_Mm LTR ERVK 0 322 92 7 923 342 45 0 0 chr5 44432671 44432715 -108104544 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 924 1752 170 113 9 chr5 44433469 44433813 -108103446 + RLTR14 LTR ERV1 3 382 0 7 924 489 273 98 31 chr5 44433965 44434158 -108103101 + B3 SINE B2 2 207 -9 7 924 1135 82 7 0 chr5 44434441 44434588 -108102671 + B1_Mus1 SINE Alu 1 148 0 7 924 408 253 0 0 chr5 44434650 44434762 -108102497 + polypurine Low_complexity Low_complexity 1 112 0 7 924 731 146 0 8 chr5 44434763 44434894 -108102365 + GA-rich Low_complexity Low_complexity 1 130 0 7 924 295 290 78 70 chr5 44435005 44435120 -108102139 - PB1D10 SINE Alu 0 117 2 7 924 486 316 28 11 chr5 44435123 44435302 -108101957 - MER58A DNA MER1_type -6 218 37 7 924 23 0 0 0 chr5 44435369 44435392 -108101867 + AT_rich Low_complexity Low_complexity 1 23 0 7 924 342 311 22 7 chr5 44435758 44435894 -108101365 - MER20 DNA MER1_type -2 217 80 7 924 255 133 0 0 chr5 44436109 44436154 -108101105 + (TTA)n Simple_repeat Simple_repeat 1 45 0 7 924 834 193 0 0 chr5 44436154 44436294 -108100965 - B1_Mur4 SINE Alu -9 141 2 7 924 873 250 10 5 chr5 44436369 44436574 -108100685 - B3 SINE B2 -10 206 1 7 924 21 0 0 0 chr5 44436898 44436919 -108100340 + AT_rich Low_complexity Low_complexity 1 21 0 7 924 291 336 107 44 chr5 44437064 44437316 -108099943 - MLT1H LTR MaLR -165 384 117 7 924 227 212 98 29 chr5 44437483 44437585 -108099674 - L1MC LINE L1 -2444 5438 5330 7 924 530 82 0 12 chr5 44438157 44438243 -108099016 + (TG)n Simple_repeat Simple_repeat 1 85 0 7 924 252 111 0 0 chr5 44439115 44439160 -108098099 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 924 355 319 0 33 chr5 44439840 44439960 -108097299 + PB1D10 SINE Alu 1 116 -1 7 924 233 129 47 31 chr5 44440248 44440312 -108096947 + A-rich Low_complexity Low_complexity 1 65 0 7 924 521 289 45 32 chr5 44440360 44440517 -108096742 + B3A SINE B2 1 159 -39 7 924 289 274 0 0 chr5 44440543 44440627 -108096632 + (CA)n Simple_repeat Simple_repeat 1 84 0 7 924 245 222 0 40 chr5 44440867 44440942 -108096317 + C-rich Low_complexity Low_complexity 6 77 0 7 924 249 83 0 0 chr5 44441322 44441358 -108095901 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 924 261 0 0 0 chr5 44442002 44442031 -108095228 + (CAA)n Simple_repeat Simple_repeat 2 30 0 7 924 564 226 168 0 chr5 44442131 44442286 -108094973 + B3 SINE B2 2 182 -34 7 924 440 88 165 0 chr5 44442978 44443069 -108094190 + Lx2A LINE L1 6897 7002 -6 7 924 21 0 0 0 chr5 44443069 44443090 -108094169 + AT_rich Low_complexity Low_complexity 1 21 0 7 924 534 148 8 23 chr5 44443094 44443225 -108094034 + Lx9 LINE L1 7487 7615 -29 7 924 34 0 0 0 chr5 44443226 44443260 -108093999 + AT_rich Low_complexity Low_complexity 1 34 0 7 924 641 257 28 22 chr5 44443685 44443864 -108093395 - B3A SINE B2 -16 182 3 7 924 931 152 7 14 chr5 44444856 44445003 -108092256 + B1_Mur3 SINE Alu 3 148 -1 7 924 563 289 0 22 chr5 44445394 44445532 -108091727 + RSINE1 SINE B4 2 136 -29 7 924 27 0 0 0 chr5 44445594 44445621 -108091638 + AT_rich Low_complexity Low_complexity 1 27 0 7 924 487 312 108 58 chr5 44446035 44446329 -108090930 + B4 SINE B4 1 270 -22 7 924 348 83 0 0 chr5 44446364 44446412 -108090847 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 924 306 282 0 129 chr5 44446560 44446731 -108090528 + B1_Mur1 SINE Alu 1 149 0 7 924 657 203 31 8 chr5 44446732 44446816 -108090443 + B1_Mur2 SINE Alu 2 84 -65 7 924 501 97 0 0 chr5 44446816 44446888 -108090371 + (TG)n Simple_repeat Simple_repeat 2 73 0 7 924 657 203 31 8 chr5 44446888 44446932 -108090327 + B1_Mur2 SINE Alu 85 131 -18 7 924 298 275 33 0 chr5 44446935 44447026 -108090233 + GA-rich Low_complexity Low_complexity 2 95 0 7 924 672 278 138 6 chr5 44448178 44448359 -108088900 - ID_B1 SINE B4 0 224 20 7 924 342 0 0 0 chr5 44449271 44449309 -108087950 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 924 21 0 0 0 chr5 44449456 44449477 -108087782 + AT_rich Low_complexity Low_complexity 1 21 0 7 924 198 325 47 23 chr5 44450483 44450595 -108086664 + L2c LINE L2 3114 3152 -235 7 924 243 0 0 0 chr5 44450792 44450819 -108086440 + (CAGT)n Simple_repeat Simple_repeat 1 27 0 7 924 602 79 11 0 chr5 44450875 44450964 -108086295 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 7 924 365 121 0 22 chr5 44450980 44451046 -108086213 - B2_Mm2 SINE B2 -107 109 47 7 924 1146 109 18 0 chr5 44451099 44451264 -108085995 - B2_Mm1t SINE B2 -20 173 6 7 924 2322 120 0 6 chr5 44451778 44452106 -108085153 + ORR1A2 LTR MaLR 1 326 -1 7 924 282 29 0 0 chr5 44453988 44454023 -108083236 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 924 1250 48 0 0 chr5 44454157 44454304 -108082955 + B1_Mus2 SINE Alu 1 147 0 7 924 495 311 15 15 chr5 44454817 44454954 -108082305 + RSINE1 SINE B4 1 137 -28 7 924 327 308 117 32 chr5 44455085 44455273 -108081986 - RMER20B LTR ERVK -323 304 101 7 924 560 298 170 80 chr5 44455391 44455778 -108081481 + Charlie1 DNA MER1_type 1662 2076 -705 7 924 676 258 19 28 chr5 44455778 44455993 -108081266 + B3 SINE B2 3 215 -1 7 924 560 298 170 80 chr5 44455993 44456176 -108081083 + Charlie1 DNA MER1_type 2077 2284 -497 7 924 765 150 6 104 chr5 44456176 44456340 -108080919 + B1_Mus1 SINE Alu 1 148 0 7 924 269 290 0 14 chr5 44456344 44456363 -108080896 + polypurine Low_complexity Low_complexity 2 20 0 7 924 261 0 0 0 chr5 44456363 44456392 -108080867 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 7 924 269 290 0 14 chr5 44456392 44456429 -108080830 + polypurine Low_complexity Low_complexity 21 57 0 7 924 1065 145 0 0 chr5 44456429 44456608 -108080651 + (GA)n Simple_repeat Simple_repeat 2 180 0 7 924 269 290 0 14 chr5 44456608 44456620 -108080639 + polypurine Low_complexity Low_complexity 58 69 0 7 924 486 198 16 33 chr5 44456620 44456803 -108080456 + GA-rich Low_complexity Low_complexity 1 180 0 7 924 417 345 73 28 chr5 44456819 44457105 -108080154 + Charlie1 DNA MER1_type 2273 2571 -210 7 924 270 245 39 97 chr5 44457119 44457248 -108080011 - PB1D10 SINE Alu 0 120 1 7 924 823 260 90 74 chr5 44457556 44457921 -108079338 - MTEb LTR MaLR -8 371 1 7 924 351 0 0 0 chr5 44458366 44458405 -108078854 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 924 300 280 59 132 chr5 44458424 44458560 -108078699 - RSINE1 SINE B4 -37 128 3 7 924 500 0 0 16 chr5 44458572 44458633 -108078626 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 924 202 273 0 0 chr5 44459709 44459753 -108077506 + CT-rich Low_complexity Low_complexity 4 47 0 7 924 1818 181 83 48 chr5 44460781 44461176 -108076083 + MTC LTR MaLR 1 409 -12 7 924 634 270 35 69 chr5 44462186 44462358 -108074901 + B3 SINE B2 8 175 -41 7 924 545 0 15 0 chr5 44462358 44462423 -108074836 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 7 924 634 270 35 69 chr5 44462423 44462453 -108074806 + B3 SINE B2 176 203 -13 7 924 252 284 126 122 chr5 44462868 44463068 -108074191 - B4 SINE B4 -16 276 44 7 924 2217 104 3 6 chr5 44463280 44463600 -108073659 - ORR1A2 LTR MaLR -8 319 1 7 924 3537 157 92 76 chr5 44463679 44463986 -108073273 + RMER13A LTR ERVK 1 310 -550 7 924 3090 40 61 5 chr5 44463986 44464365 -108072894 - MTB LTR MaLR 0 400 1 7 924 3537 157 92 76 chr5 44464365 44464829 -108072430 + RMER13A LTR ERVK 311 784 -76 7 924 274 275 75 32 chr5 44465880 44465974 -108071285 - MLT1A1 LTR MaLR -306 102 5 7 924 227 115 0 37 chr5 44466104 44466158 -108071101 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 7 924 450 379 0 0 chr5 44466158 44466303 -108070956 - RSINE1 SINE B4 -11 154 10 7 924 396 289 102 0 chr5 44466322 44466450 -108070809 - B1F SINE Alu -8 141 1 7 924 308 253 12 81 chr5 44466953 44467039 -108070220 - ID4_ SINE ID -3 80 1 7 924 363 328 7 68 chr5 44467047 44467194 -108070065 - ID_B1 SINE B4 -3 221 84 7 924 968 91 68 0 chr5 44467341 44467473 -108069786 - B1_Mur4 SINE Alu -8 142 2 7 924 379 184 38 67 chr5 44467804 44467909 -108069350 - Charlie1b DNA MER1_type -221 302 201 7 924 935 90 0 77 chr5 44468063 44468219 -108069040 - B1_Mus1 SINE Alu 0 148 5 7 924 311 261 179 69 chr5 44468410 44468583 -108068676 - B3 SINE B2 -1 215 24 7 924 458 96 0 0 chr5 44469135 44469208 -108068051 + Lx4A LINE L1 6984 7056 -2 7 924 31 0 0 0 chr5 44469209 44469240 -108068019 + AT_rich Low_complexity Low_complexity 1 31 0 7 924 207 0 0 0 chr5 44469240 44469263 -108067996 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 7 924 23 0 0 0 chr5 44469983 44470006 -108067253 + AT_rich Low_complexity Low_complexity 1 23 0 7 924 1515 271 76 49 chr5 44470912 44471425 -108065834 - MER44B DNA MER2_type -23 527 1 7 924 235 299 187 14 chr5 44471474 44471613 -108065646 - L2a LINE L2 -281 3145 2983 7 924 920 105 105 0 chr5 44472913 44473046 -108064213 + B1_Mus1 SINE Alu 1 147 -1 7 924 1047 114 53 24 chr5 44473059 44473209 -108064050 + B2_Mm2 SINE B2 3 161 -34 7 924 336 64 0 0 chr5 44473209 44473256 -108064003 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 7 924 1047 114 53 24 chr5 44473256 44473275 -108063984 + B2_Mm2 SINE B2 162 177 -18 7 924 1360 204 97 3 chr5 44473292 44473582 -108063677 + ORR1D1 LTR MaLR 58 374 0 7 924 26 64 0 0 chr5 44473619 44473666 -108063593 + AT_rich Low_complexity Low_complexity 1 47 0 7 924 602 239 49 93 chr5 44474262 44474323 -108062936 - MLT1C LTR MaLR -250 217 154 8 924 620 288 189 0 chr5 44474323 44474556 -108062703 + B4A SINE B4 4 280 -12 8 924 341 116 14 0 chr5 44474564 44474633 -108062626 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 924 602 239 49 93 chr5 44474633 44474788 -108062471 - MLT1C LTR MaLR -323 144 2 8 924 347 0 23 0 chr5 44475028 44475071 -108062188 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 924 491 282 103 66 chr5 44475106 44475349 -108061910 + Tigger13a DNA MER2_type 416 667 -104 8 924 789 269 100 20 chr5 44475888 44476138 -108061121 - B4A SINE B4 -9 283 14 8 924 407 317 89 4 chr5 44476223 44476470 -108060789 + L1ME3A LINE L1 5652 5919 -254 8 924 216 186 152 0 chr5 44477924 44477983 -108059276 - MIR SINE MIR -19 243 176 8 924 258 176 0 0 chr5 44477990 44478041 -108059218 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 924 317 168 56 63 chr5 44478047 44478149 -108059110 - MIR SINE MIR -98 164 62 8 924 375 270 0 0 chr5 44478710 44478884 -108058375 + (CA)n Simple_repeat Simple_repeat 2 175 0 8 924 229 239 124 3 chr5 44479013 44479104 -108058155 + MIR SINE MIR 74 166 -96 8 924 285 236 83 0 chr5 44480839 44480911 -108056348 + Helitron3Na_Mam RC Helitron 369 446 -40 8 924 381 22 0 0 chr5 44481268 44481314 -108055945 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 924 1843 121 110 68 chr5 44481471 44481826 -108055433 + ORR1C1 LTR MaLR 1 370 -8 8 924 3065 66 13 5 chr5 44481974 44482371 -108054888 + MTB LTR MaLR 1 400 0 8 924 374 294 18 18 chr5 44482432 44482543 -108054716 + MLT1A LTR MaLR 191 301 -73 8 924 2083 170 0 0 chr5 44482979 44483297 -108053962 - MTC LTR MaLR 0 421 104 8 924 614 115 0 0 chr5 44483302 44483389 -108053870 - MTC LTR MaLR -225 196 110 8 924 580 276 82 53 chr5 44483390 44483597 -108053662 + B3 SINE B2 1 213 -3 8 924 644 174 0 0 chr5 44483608 44483717 -108053542 + B1_Mur3 SINE Alu 39 147 -2 8 924 908 244 63 123 chr5 44484090 44484488 -108052771 - MTE2a LTR MaLR 0 379 6 8 924 704 213 230 0 chr5 44484491 44484665 -108052594 + B3 SINE B2 1 214 -2 8 924 288 0 0 0 chr5 44484741 44484773 -108052486 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 924 336 24 0 0 chr5 44485444 44485485 -108051774 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 924 1207 271 19 16 chr5 44487015 44487323 -108049936 + RCHARR1 DNA MER1_type 161 469 -505 8 924 241 221 101 25 chr5 44487313 44487392 -108049867 + RCHARR1 DNA MER1_type 738 822 -152 8 924 504 168 51 7 chr5 44487933 44488356 -108048903 + (CA)n Simple_repeat Simple_repeat 1 441 0 8 924 402 191 131 0 chr5 44488780 44488864 -108048395 + B1_Mm SINE Alu 48 142 -5 8 924 750 196 33 89 chr5 44488974 44489187 -108048072 + B3 SINE B2 1 201 -15 8 924 232 153 47 12 chr5 44489189 44489275 -108047984 + (CA)n Simple_repeat Simple_repeat 2 90 0 8 924 269 196 0 0 chr5 44489294 44489345 -108047914 + B3 SINE B2 158 208 -8 8 924 308 289 66 58 chr5 44489488 44489609 -108047650 - RSINE1 SINE B4 -41 124 3 8 924 205 325 108 0 chr5 44489788 44489871 -108047388 + L2c LINE L2 3287 3378 -9 8 924 655 196 168 32 chr5 44490904 44491094 -108046165 - B3 SINE B2 0 216 1 8 924 726 219 51 88 chr5 44493777 44493992 -108043267 - B3 SINE B2 -8 208 2 8 924 201 242 136 0 chr5 44494544 44494610 -108042649 - MIRb SINE MIR -160 108 34 8 924 504 327 89 31 chr5 44494669 44494893 -108042366 - RMER15 LTR ERVL 0 575 339 8 924 752 125 8 24 chr5 44494917 44495040 -108042219 + B1_Mur4 SINE Alu 30 150 0 8 924 301 281 31 69 chr5 44495134 44495264 -108041995 - RMER15 LTR ERVL -449 126 2 8 924 638 275 16 47 chr5 44495432 44495623 -108041636 + B3A SINE B2 8 192 -6 8 924 233 330 141 43 chr5 44495761 44495853 -108041406 + PB1D10 SINE Alu 4 104 -13 8 924 24 0 0 0 chr5 44496359 44496383 -108040876 + AT_rich Low_complexity Low_complexity 1 24 0 8 924 24 0 0 0 chr5 44497265 44497289 -108039970 + AT_rich Low_complexity Low_complexity 1 24 0 8 924 348 294 40 74 chr5 44497293 44497477 -108039782 + LTR37B LTR ERV1 240 464 -4 8 924 21 0 0 0 chr5 44497543 44497564 -108039695 + AT_rich Low_complexity Low_complexity 1 21 0 8 924 2075 210 25 10 chr5 44497988 44498396 -108038863 + MTD LTR MaLR 1 414 -5 8 924 346 299 41 82 chr5 44498682 44498853 -108038406 - MER20 DNA MER1_type -4 215 52 8 924 5170 158 29 37 chr5 44498908 44499818 -108037441 + RMER19B LTR ERVK 1 902 0 8 924 467 263 111 2 chr5 44499818 44499964 -108037295 + B3A SINE B2 54 212 -4 8 924 332 276 64 3 chr5 44500146 44500271 -108036988 + RSINE1 SINE B4 68 281 -11 1 924 315 0 0 0 chr5 44500272 44500307 -108036952 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 924 409 328 61 161 chr5 44500935 44501213 -108036046 - MLT1C LTR MaLR 0 390 149 3 924 1170 36 0 7 chr5 44501213 44501352 -108035907 + B1_Mus2 SINE Alu 1 138 -9 4 924 246 32 0 0 chr5 44501352 44501383 -108035876 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 924 246 328 61 161 chr5 44501383 44501445 -108035814 - MLT1C LTR MaLR -242 148 84 3 924 630 0 0 0 chr5 44501449 44501519 -108035740 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 6 924 302 317 90 9 chr5 44501561 44501692 -108035567 - MIRb SINE MIR -46 162 26 7 924 290 268 70 0 chr5 44502436 44502507 -108034752 + ID4 SINE ID 2 77 -6 8 924 533 254 72 0 chr5 44503155 44503293 -108033966 - B1_Mur1 SINE Alu 0 149 2 9 924 739 309 14 63 chr5 44503847 44504210 -108033049 + MER2 DNA MER2_type 1 345 0 1 924 246 253 11 78 chr5 44504937 44505027 -108032232 + MER96B DNA hAT 285 368 -49 1 924 555 231 21 43 chr5 44505736 44505876 -108031383 + B1F1 SINE Alu 13 149 0 1 924 1915 166 49 52 chr5 44505931 44506083 -108031176 + ORR1B2 LTR MaLR 1 136 -231 1 924 198 0 0 0 chr5 44506083 44506105 -108031154 + (CAAGC)n Simple_repeat Simple_repeat 5 26 0 1 924 648 0 0 0 chr5 44506108 44506180 -108031079 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 924 1915 166 49 52 chr5 44506180 44506391 -108030868 + ORR1B2 LTR MaLR 137 362 -5 1 924 1449 293 13 31 chr5 44506950 44507334 -108029925 + MTEa LTR MaLR 1 377 -2 1 924 291 351 27 0 chr5 44507334 44507444 -108029815 + ORR1E LTR MaLR 22 134 -225 1 924 734 141 8 0 chr5 44508251 44508379 -108028880 + (TTC)n Simple_repeat Simple_repeat 1 129 0 1 924 1771 202 106 35 chr5 44508531 44509023 -108028236 + RLTR11A2 LTR ERVK 1 527 0 1 924 277 337 11 21 chr5 44509140 44509234 -108028025 + L2a LINE L2 3314 3406 -20 2 924 394 0 71 0 chr5 44509239 44509295 -108027964 + (TGAA)n Simple_repeat Simple_repeat 3 62 0 2 924 912 87 0 0 chr5 44509542 44509669 -108027590 + (TTCC)n Simple_repeat Simple_repeat 1 127 0 2 924 265 182 57 125 chr5 44509762 44509850 -108027409 + RLTR25B LTR ERVK 428 509 -519 2 924 789 82 0 52 chr5 44509771 44509887 -108027372 + B1_Mus2 SINE Alu 32 141 -6 2 924 441 0 0 0 chr5 44509888 44509937 -108027322 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 924 236 274 103 95 chr5 44510236 44510478 -108026781 + MER101B LTR ERV1 240 483 -87 2 924 595 284 77 33 chr5 44511033 44511215 -108026044 - RMER30 DNA MER1_type 0 202 13 2 924 265 301 135 35 chr5 44511226 44511367 -108025892 + MIR SINE MIR 99 253 -9 2 924 991 68 44 22 chr5 44511451 44511586 -108025673 + B1_Mus1 SINE Alu 2 139 -9 2 924 548 231 71 71 chr5 44512395 44512591 -108024668 + RMER1C Other Other 1131 1326 -16 3 924 1043 294 136 45 chr5 44512851 44513321 -108023938 + MER21B LTR ERV1 273 785 -78 3 924 271 358 9 0 chr5 44514865 44514981 -108022278 + MIR SINE MIR 24 142 -134 3 924 489 17 0 0 chr5 44515004 44515062 -108022197 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 3 924 1313 254 115 3 chr5 44515178 44515553 -108021706 + MTD LTR MaLR 3 419 0 3 924 3143 254 91 89 chr5 44515558 44515710 -108021549 + MTD-int LTR MaLR 6 165 -1093 3 924 3787 67 0 0 chr5 44515710 44516173 -108021086 + L1_Mus1 LINE L1 6105 6567 0 3 924 3143 254 91 89 chr5 44516173 44516735 -108020524 + MTD-int LTR MaLR 166 689 -569 3 924 2109 102 30 21 chr5 44516735 44517064 -108020195 - L1Md_F2 LINE L1 0 6582 6251 3 924 3143 254 91 89 chr5 44517064 44517598 -108019661 + MTD-int LTR MaLR 690 1257 -1 3 924 1293 246 103 48 chr5 44517598 44517749 -108019510 + MTD LTR MaLR 1 143 -276 3 924 2697 122 50 44 chr5 44517749 44518228 -108019031 + RLTR45 LTR ERVK 1 482 0 3 924 1293 246 103 48 chr5 44518228 44518473 -108018786 + MTD LTR MaLR 144 419 0 3 924 238 278 75 32 chr5 44518641 44518734 -108018525 - RMER10A LTR ERVL -28 414 318 3 924 655 262 72 5 chr5 44519398 44519414 -108017845 - ID_B1 SINE B4 -2 222 204 3 924 342 0 0 0 chr5 44519414 44519452 -108017807 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 924 655 262 72 5 chr5 44519452 44519642 -108017617 - ID_B1 SINE B4 -21 203 3 3 924 383 279 7 93 chr5 44519838 44519988 -108017271 + B1F SINE Alu 5 141 -8 4 924 206 350 33 16 chr5 44520611 44520733 -108016526 + L2 LINE L2 2743 2866 -553 4 924 222 238 109 16 chr5 44521816 44521880 -108015379 + BC1_Mm scRNA scRNA 2 71 -81 4 924 714 218 47 7 chr5 44521827 44521888 -108015371 + ID SINE ID 16 82 -142 4 924 380 266 35 9 chr5 44521888 44522002 -108015257 + PB1D10 SINE Alu 1 117 0 4 924 390 21 0 0 chr5 44522005 44522052 -108015207 + (CTAA)n Simple_repeat Simple_repeat 3 49 0 4 924 644 205 34 0 chr5 44522056 44522173 -108015086 - B1_Mur4 SINE Alu -26 124 4 4 924 301 75 38 0 chr5 44522206 44522259 -108015000 + (TCTCCC)n Simple_repeat Simple_repeat 4 58 0 4 924 589 204 71 122 chr5 44522260 44522307 -108014952 - B2_Mm2 SINE B2 -8 187 152 4 924 1170 82 0 0 chr5 44522307 44522454 -108014805 - B1_Mm SINE Alu 0 147 1 5 924 770 196 16 22 chr5 44522454 44522602 -108014657 - B3 SINE B2 -44 151 2 4 924 253 282 0 0 chr5 44523982 44524053 -108013206 + MIRb SINE MIR 53 123 -145 5 924 374 335 81 43 chr5 44524546 44524631 -108012628 + MER2 DNA MER2_type 5 89 -256 5 924 612 278 20 40 chr5 44524631 44524833 -108012426 + B3A SINE B2 1 198 0 5 924 374 335 81 43 chr5 44524833 44524981 -108012278 + MER2 DNA MER2_type 90 246 -99 5 924 231 203 0 0 chr5 44524984 44525048 -108012211 + (TTTA)n Simple_repeat Simple_repeat 3 66 0 5 924 261 282 42 0 chr5 44525048 44525119 -108012140 + MER2 DNA MER2_type 272 345 0 5 924 343 220 15 0 chr5 44525159 44525291 -108011968 + GA-rich Low_complexity Low_complexity 2 135 0 5 924 5675 47 65 0 chr5 44525598 44526295 -108010964 + RLTR4_Mm LTR ERV1 1 742 0 5 924 69691 10 2 0 chr5 44526295 44533883 -108003376 + RLTR4_MM-int LTR ERV1 1 7601 0 5 924 5675 47 65 0 chr5 44533883 44534580 -108002679 + RLTR4_Mm LTR ERV1 1 742 0 5 924 761 274 67 67 chr5 44534593 44534965 -108002294 + MLT1B LTR MaLR 12 383 -7 5 924 458 261 16 25 chr5 44535527 44535649 -108001610 - RMER5 LTR ERV1 0 534 414 5 924 3660 193 117 23 chr5 44535661 44536531 -108000728 + RMER17B LTR ERVK 1 952 -6 5 924 321 274 11 45 chr5 44536557 44536645 -108000614 + B4A SINE B4 3 87 -205 6 924 1032 72 0 0 chr5 44537400 44537538 -107999721 + (TTCCC)n Simple_repeat Simple_repeat 3 140 0 6 924 504 117 0 0 chr5 44537540 44537617 -107999642 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 924 672 154 9 26 chr5 44537643 44537756 -107999503 + B1_Mus2 SINE Alu 36 146 -1 6 924 424 217 131 51 chr5 44537764 44537939 -107999320 - L1MB5 LINE L1 -57 6117 5929 6 924 821 191 7 7 chr5 44540510 44540658 -107996601 - B1_Mus1 SINE Alu 0 148 1 6 924 406 128 125 14 chr5 44541139 44541245 -107996014 - ORR1D1 LTR MaLR -2 372 212 6 924 4256 45 8 4 chr5 44541276 44541786 -107995473 - RLTR1B LTR ERV1 0 512 1 6 924 570 129 21 41 chr5 44541803 44541900 -107995359 + B3A SINE B2 2 96 -102 6 924 508 384 49 8 chr5 44541886 44542133 -107995126 - MER77 LTR ERVL -267 340 84 6 924 369 0 0 0 chr5 44542257 44542298 -107994961 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 924 400 298 167 0 chr5 44542298 44542412 -107994847 - B3A SINE B2 -65 133 1 7 924 231 61 0 0 chr5 44542506 44542539 -107994720 + (T)n Simple_repeat Simple_repeat 1 33 0 7 924 209 228 51 34 chr5 44542539 44542598 -107994661 - MIR SINE MIR -122 140 81 7 924 297 342 101 101 chr5 44543655 44544013 -107993246 - MLT1C LTR MaLR 0 467 110 7 924 228 294 0 14 chr5 44544025 44544094 -107993165 + ID4 SINE ID 2 69 -14 7 924 191 292 133 20 chr5 44544208 44544306 -107992953 - L2a LINE L2 -30 3396 3288 7 924 1880 269 22 27 chr5 44545480 44545968 -107991291 + Lx6 LINE L1 6947 7432 -28 7 924 23 0 0 0 chr5 44545968 44545991 -107991268 + AT_rich Low_complexity Low_complexity 1 23 0 7 924 384 282 67 92 chr5 44546046 44546396 -107990863 + MLT1C LTR MaLR 1 329 -61 7 924 2776 181 156 18 chr5 44546396 44547004 -107990255 + RLTR17 LTR ERVK 1 692 0 8 924 284 292 83 133 chr5 44547004 44547052 -107990207 + MLT1C LTR MaLR 330 379 -11 7 924 1133 278 40 32 chr5 44547188 44547564 -107989695 + MTE2a LTR MaLR 1 379 0 8 924 882 213 19 0 chr5 44547673 44547828 -107989431 + ID_B1 SINE B4 2 159 -65 8 924 953 305 115 27 chr5 44549167 44549378 -107987881 + L1MB8 LINE L1 5453 5697 -481 8 924 2505 143 46 11 chr5 44549378 44549816 -107987443 - RLTR11B LTR ERVK 0 453 1 8 924 953 305 115 27 chr5 44549816 44550271 -107986988 + L1MB8 LINE L1 5698 6178 0 8 924 35 0 0 0 chr5 44550328 44550363 -107986896 + AT_rich Low_complexity Low_complexity 1 35 0 8 924 1045 266 99 38 chr5 44550385 44550810 -107986449 + L1MC1 LINE L1 5703 6153 -180 8 924 1556 272 74 57 chr5 44551047 44551638 -107985621 - RLTR18B LTR ERVK -4 612 1 8 924 275 379 61 28 chr5 44551922 44552169 -107985090 - MIRb SINE MIR 0 268 14 8 924 1080 283 64 30 chr5 44552453 44553125 -107984134 + L1MA4 LINE L1 4969 5938 -362 8 924 1141 157 88 0 chr5 44553615 44553819 -107983440 - URR1B DNA MER1_type -1 224 3 9 924 364 231 59 85 chr5 44554671 44554789 -107982470 - B2_Mm1t SINE B2 0 193 79 9 924 247 283 68 55 chr5 44555563 44555709 -107981550 + MIRm SINE MIR 41 188 -88 9 924 848 209 17 51 chr5 44556335 44556572 -107980687 - RMER1C Other Other -23 1319 918 9 924 995 187 23 28 chr5 44556563 44556778 -107980481 - RMER1C Other Other -285 1057 844 9 924 468 0 0 0 chr5 44556994 44557046 -107980213 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 9 924 343 316 0 0 chr5 44557046 44557141 -107980118 - PB1 SINE Alu -11 116 22 9 924 587 171 72 0 chr5 44557207 44557318 -107979941 - B3 SINE B2 0 216 98 9 924 268 294 0 0 chr5 44557319 44557387 -107979872 - ID_B1 SINE B4 -56 168 101 9 924 214 327 50 44 chr5 44558553 44558713 -107978546 - MIRb SINE MIR -90 178 18 9 924 405 0 0 0 chr5 44558735 44558780 -107978479 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 9 924 29 70 0 0 chr5 44559106 44559163 -107978096 + AT_rich Low_complexity Low_complexity 1 57 0 1 924 238 244 0 0 chr5 44559360 44559405 -107977854 + polypyrimidine Low_complexity Low_complexity 3 47 0 1 924 1024 101 13 20 chr5 44559425 44559576 -107977683 - B1_Mur4 SINE Alu 0 150 1 1 924 24 0 0 0 chr5 44559882 44559906 -107977353 + AT_rich Low_complexity Low_complexity 1 24 0 1 924 640 261 72 52 chr5 44559944 44560138 -107977121 + B3A SINE B2 1 198 0 1 924 351 0 0 0 chr5 44560451 44560490 -107976769 + (A)n Simple_repeat Simple_repeat 1 39 0 1 924 751 222 10 96 chr5 44560773 44560982 -107976277 - B3A SINE B2 0 198 8 1 924 471 35 0 0 chr5 44563460 44563517 -107973742 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 115 1272 152 4 74 chr5 44564346 44564588 -107972671 + URR1B DNA MER1_type 1 225 0 1 925 204 40 0 0 chr5 44564758 44564783 -107972476 + (C)n Simple_repeat Simple_repeat 1 25 0 1 925 252 59 0 0 chr5 44564783 44564817 -107972442 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 925 594 236 0 0 chr5 44564817 44564940 -107972319 - RSINE1 SINE B4 -41 124 2 1 925 26 30 0 0 chr5 44568080 44568113 -107969146 + AT_rich Low_complexity Low_complexity 1 33 0 1 925 293 291 0 25 chr5 44568961 44569042 -107968217 - BC1_Mm scRNA scRNA -73 79 1 1 925 234 0 0 0 chr5 44569295 44569321 -107967938 + (ACATG)n Simple_repeat Simple_repeat 5 30 0 1 925 678 85 0 0 chr5 44570767 44570861 -107966398 + (CA)n Simple_repeat Simple_repeat 2 95 0 1 925 22 56 0 0 chr5 44572686 44572722 -107964537 + AT_rich Low_complexity Low_complexity 1 36 0 1 925 655 255 0 7 chr5 44572740 44572886 -107964373 + ID_B1 SINE B4 80 224 0 1 925 413 307 17 17 chr5 44572895 44573011 -107964248 + ID_B1 SINE B4 5 120 -104 1 925 606 125 88 9 chr5 44577163 44577276 -107959983 + B1_Mus1 SINE Alu 27 148 0 1 925 484 275 6 75 chr5 44578566 44578739 -107958520 + RSINE1 SINE B4 5 165 0 1 925 201 158 0 0 chr5 44579613 44579651 -107957608 + T-rich Low_complexity Low_complexity 4 41 0 1 925 747 226 0 20 chr5 44579652 44579801 -107957458 - B1_Mus1 SINE Alu -1 147 2 1 925 445 311 74 0 chr5 44580059 44580249 -107957010 - MER2 DNA MER2_type -51 294 91 1 925 428 111 14 0 chr5 44580316 44580388 -107956871 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 925 1251 93 16 21 chr5 44582101 44582287 -107954972 + B2_Mm2 SINE B2 2 186 -9 1 925 486 223 44 18 chr5 44582302 44582416 -107954843 - B3 SINE B2 -4 212 96 1 925 342 270 29 87 chr5 44583071 44583209 -107954050 + RMER10B LTR ERVL 269 398 0 1 925 42 0 0 0 chr5 44583422 44583464 -107953795 + AT_rich Low_complexity Low_complexity 1 42 0 1 925 967 104 7 14 chr5 44583978 44584124 -107953135 + B1_Mus1 SINE Alu 4 148 0 1 925 1083 193 14 18 chr5 44585001 44585223 -107952036 - URR1A DNA MER1_type -5 221 1 1 925 1162 81 0 56 chr5 44585824 44586021 -107951238 + B2_Mm2 SINE B2 3 188 -7 1 925 468 0 0 0 chr5 44586072 44586124 -107951135 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 925 248 353 49 28 chr5 44586430 44586573 -107950686 - L1MC LINE L1 -2218 5664 5519 1 925 225 213 0 41 chr5 44586707 44586756 -107950503 - ID4_ SINE ID -28 55 9 1 925 23 0 0 0 chr5 44586756 44586779 -107950480 + AT_rich Low_complexity Low_complexity 1 23 0 1 925 233 337 38 19 chr5 44586779 44586885 -107950374 - PB1D10 SINE Alu -9 108 1 1 925 1220 61 0 0 chr5 44586920 44587067 -107950192 + B1_Mus2 SINE Alu 1 147 0 1 925 189 0 0 0 chr5 44587067 44587088 -107950171 + (A)n Simple_repeat Simple_repeat 1 21 0 1 925 651 60 0 0 chr5 44587134 44587218 -107950041 + (TTCC)n Simple_repeat Simple_repeat 4 87 0 1 925 1273 96 6 11 chr5 44587938 44588118 -107949141 + B2_Mm2 SINE B2 3 181 -14 1 925 314 128 33 0 chr5 44588164 44588228 -107949031 + B2_Mm2 SINE B2 46 116 -82 1 925 252 0 0 0 chr5 44588244 44588272 -107948987 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 925 287 65 0 21 chr5 44589398 44589445 -107947814 + (CCAA)n Simple_repeat Simple_repeat 2 47 0 1 925 1356 90 17 0 chr5 44591840 44592017 -107945242 + B2_Mm2 SINE B2 1 180 -15 1 925 231 36 0 0 chr5 44592019 44592047 -107945212 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1 925 21 0 0 0 chr5 44595902 44595923 -107941336 + AT_rich Low_complexity Low_complexity 1 21 0 1 925 600 245 146 0 chr5 44596452 44596644 -107940615 + MLT1B LTR MaLR 150 369 -21 1 925 379 211 203 0 chr5 44599066 44599189 -107938070 + B1F1 SINE Alu 2 149 0 1 925 518 214 143 0 chr5 44599302 44599442 -107937817 + B3 SINE B2 1 160 -56 1 925 3915 129 112 38 chr5 44601564 44602267 -107934992 - RMER6A LTR ERVK -1 755 1 1 925 1403 184 85 58 chr5 44603281 44603504 -107933755 + ORR1D1 LTR MaLR 1 228 -146 1 925 180 0 0 0 chr5 44603504 44603524 -107933735 + (CTTG)n Simple_repeat Simple_repeat 3 22 0 1 925 1403 184 85 58 chr5 44603524 44603664 -107933595 + ORR1D1 LTR MaLR 229 373 -1 1 925 313 290 32 0 chr5 44603868 44603961 -107933298 + ORR1E LTR MaLR 32 127 -232 1 925 200 35 35 0 chr5 44604352 44604381 -107932878 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1 925 28 86 0 0 chr5 44604585 44604655 -107932604 + AT_rich Low_complexity Low_complexity 1 70 0 1 925 1028 116 0 40 chr5 44605604 44605756 -107931503 - B1_Mus1 SINE Alu -1 147 2 1 925 25 83 0 0 chr5 44606038 44606098 -107931161 + AT_rich Low_complexity Low_complexity 1 60 0 1 925 21 0 0 0 chr5 44608188 44608209 -107929050 + AT_rich Low_complexity Low_complexity 1 21 0 1 925 273 57 0 0 chr5 44608250 44608285 -107928974 + (T)n Simple_repeat Simple_repeat 1 35 0 1 925 180 111 0 0 chr5 44609001 44609028 -107928231 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 1 925 189 0 0 0 chr5 44610502 44610523 -107926736 + (CACAT)n Simple_repeat Simple_repeat 5 25 0 1 925 1074 90 7 0 chr5 44611639 44611784 -107925475 + B1_Mus2 SINE Alu 2 147 0 1 925 523 280 76 0 chr5 44612478 44612610 -107924649 - B1F2 SINE Alu -6 143 2 1 925 391 171 16 16 chr5 44614122 44614212 -107923047 - PB1D10 SINE Alu -19 129 40 1 925 198 103 0 0 chr5 44617619 44617648 -107919611 + (CCCG)n Simple_repeat Simple_repeat 3 31 0 1 925 224 266 35 9 chr5 44617864 44618056 -107919203 + (CCCG)n Simple_repeat Simple_repeat 1 197 0 1 925 834 205 117 16 chr5 44620473 44620661 -107916598 - B3 SINE B2 -6 210 4 1 925 409 237 50 20 chr5 44620670 44620769 -107916490 - PB1D7 SINE Alu -1 119 18 1 925 625 190 40 66 chr5 44621240 44621392 -107915867 - B1_Mur4 SINE Alu -1 149 2 1 925 1410 89 0 10 chr5 44621703 44621895 -107915364 - B2_Mm2 SINE B2 -3 192 3 1 925 282 29 0 0 chr5 44622515 44622550 -107914709 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 925 420 143 0 0 chr5 44622787 44622857 -107914402 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 925 274 61 41 0 chr5 44623556 44623605 -107913654 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 1 925 213 108 0 0 chr5 44624303 44624340 -107912919 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 925 1169 214 122 15 chr5 44625861 44626189 -107911070 + MTEa LTR MaLR 17 379 0 1 925 221 135 19 0 chr5 44626218 44626270 -107910989 + T-rich Low_complexity Low_complexity 2 54 0 1 925 272 266 154 9 chr5 44626347 44626457 -107910802 + MIRb SINE MIR 70 195 -73 1 925 207 333 99 0 chr5 44626525 44626636 -107910623 - L2c LINE L2 -38 3349 3228 1 925 311 258 35 11 chr5 44627164 44627280 -107909979 + MLT1A1 LTR MaLR 1 124 -284 1 925 808 302 127 23 chr5 44627434 44627742 -107909517 + MTE2b LTR MaLR 1 340 -39 1 925 923 277 52 27 chr5 44627739 44628075 -107909184 + MTE2a LTR MaLR 25 381 -38 1 925 414 0 0 0 chr5 44628075 44628121 -107909138 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 1 925 923 280 60 29 chr5 44628121 44628159 -107909100 + MTE2a LTR MaLR 339 364 -15 1 925 292 227 80 0 chr5 44628147 44628222 -107909037 + MTEa LTR MaLR 299 379 0 1 925 256 254 0 40 chr5 44628242 44628316 -107908943 + MLT1A1 LTR MaLR 293 363 -2 1 925 23 0 0 0 chr5 44628844 44628867 -107908392 + AT_rich Low_complexity Low_complexity 1 23 0 1 925 235 241 35 0 chr5 44628955 44629013 -107908246 + CT-rich Low_complexity Low_complexity 2 61 0 1 925 376 269 16 70 chr5 44629037 44629165 -107908094 - RSINE1 SINE B4 -38 127 7 1 925 453 235 0 0 chr5 44630102 44630187 -107907072 + B4A SINE B4 2 86 -206 1 925 263 296 7 20 chr5 44630723 44630810 -107906449 + CT-rich Low_complexity Low_complexity 1 85 0 1 925 260 77 154 0 chr5 44631374 44631426 -107905833 - RMER5 LTR ERV1 -10 524 465 1 925 350 299 37 18 chr5 44632928 44633037 -107904222 - RSINE1 SINE B4 -51 114 4 1 925 1082 272 61 13 chr5 44633037 44633425 -107903834 + RMER5 LTR ERV1 128 534 0 1 925 835 301 60 24 chr5 44634396 44634811 -107902448 + MER57F LTR ERV1 1 430 -6 1 925 809 214 24 0 chr5 44635153 44635321 -107901938 - B3A SINE B2 -26 172 1 1 925 234 342 82 19 chr5 44635796 44636002 -107901257 + MIR SINE MIR 29 247 -15 1 925 1022 206 14 14 chr5 44636296 44636504 -107900755 + MTD LTR MaLR 2 209 -210 1 925 758 99 41 0 chr5 44636504 44636625 -107900634 + B1_Mus1 SINE Alu 1 126 -22 1 925 202 182 0 0 chr5 44636629 44636662 -107900597 + polypurine Low_complexity Low_complexity 4 36 0 1 925 500 254 29 14 chr5 44636662 44636802 -107900457 + MTD LTR MaLR 221 362 -57 1 925 1506 154 66 14 chr5 44636816 44637105 -107900154 - Lx5 LINE L1 -3 7047 6744 1 925 240 35 0 0 chr5 44637146 44637175 -107900084 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 1 925 2401 142 71 5 chr5 44637244 44637668 -107899591 + Lx5 LINE L1 5684 6135 -915 2 925 278 103 68 17 chr5 44637670 44637729 -107899530 + MTD LTR MaLR 344 405 -14 1 925 348 24 0 0 chr5 44638375 44638416 -107898843 + (CTG)n Simple_repeat Simple_repeat 2 42 0 2 925 249 33 0 0 chr5 44638596 44638626 -107898633 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 925 845 182 0 59 chr5 44638628 44638780 -107898479 - B1_Mur3 SINE Alu -6 143 1 2 925 519 225 61 71 chr5 44639006 44639202 -107898057 - B3A SINE B2 0 198 5 2 925 291 299 21 0 chr5 44639266 44639363 -107897896 + MLT1N2 LTR MaLR 410 508 -54 2 925 654 262 7 7 chr5 44640048 44640194 -107897065 + RSINE1 SINE B4 3 148 -17 2 925 1081 131 114 0 chr5 44640333 44640487 -107896772 + B2_Mm2 SINE B2 1 155 -40 2 925 450 0 0 0 chr5 44640487 44640537 -107896722 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2 925 1081 131 114 0 chr5 44640537 44640557 -107896702 + B2_Mm2 SINE B2 156 193 -2 2 925 603 311 53 23 chr5 44640594 44640860 -107896399 + B4 SINE B4 1 274 -18 2 925 258 156 0 0 chr5 44642240 44642285 -107894974 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2 925 1667 210 52 57 chr5 44642476 44642895 -107894364 - MTD LTR MaLR -2 417 1 2 925 694 209 193 60 chr5 44643355 44643604 -107893655 + MTEb LTR MaLR 43 324 -55 2 925 181 257 95 0 chr5 44644561 44644635 -107892624 + MIRm SINE MIR 182 262 -14 2 925 303 272 21 32 chr5 44644699 44644794 -107892465 - PB1 SINE Alu -2 125 32 2 925 2220 149 62 0 chr5 44644795 44645165 -107892094 + ORR1B1 LTR MaLR 1 393 -1 2 925 441 260 107 27 chr5 44645226 44645376 -107891883 - RSINE1 SINE B4 -1 164 3 2 925 206 81 27 0 chr5 44645383 44645420 -107891839 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 2 925 359 123 26 40 chr5 44645667 44645743 -107891516 - ORR1C1 LTR MaLR -1 377 303 2 925 369 273 82 0 chr5 44646540 44646650 -107890609 - PB1D7 SINE Alu -1 119 1 2 925 779 275 40 16 chr5 44646924 44647175 -107890084 + MTEa LTR MaLR 19 275 -104 2 925 261 254 103 21 chr5 44647540 44647685 -107889574 + L1MB8 LINE L1 6010 6166 -12 2 925 1544 233 67 25 chr5 44647762 44648163 -107889096 + MTD LTR MaLR 2 419 0 2 925 23 0 0 0 chr5 44648196 44648219 -107889040 + AT_rich Low_complexity Low_complexity 1 23 0 2 925 364 285 74 68 chr5 44648238 44648400 -107888859 - RSINE1 SINE B4 0 165 3 2 925 189 0 0 0 chr5 44648730 44648751 -107888508 + (T)n Simple_repeat Simple_repeat 1 21 0 2 925 1452 70 11 5 chr5 44649180 44649368 -107887891 + B2_Mm2 SINE B2 1 189 -6 2 925 749 238 203 18 chr5 44649376 44649706 -107887553 + MLT1A1 LTR MaLR 15 405 -3 2 925 498 17 0 0 chr5 44649707 44649766 -107887493 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 925 189 0 0 0 chr5 44649994 44650015 -107887244 + (TGGA)n Simple_repeat Simple_repeat 2 22 0 2 925 597 150 8 23 chr5 44650110 44650240 -107887019 + CT-rich Low_complexity Low_complexity 3 130 0 2 925 333 0 0 0 chr5 44650240 44650277 -107886982 + (TTC)n Simple_repeat Simple_repeat 3 39 0 2 925 414 0 0 0 chr5 44650277 44650323 -107886936 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 925 1533 230 73 8 chr5 44650324 44650705 -107886554 + MTD LTR MaLR 14 419 0 2 925 753 12 0 0 chr5 44650876 44650962 -107886297 + (GA)n Simple_repeat Simple_repeat 1 86 0 2 925 1257 217 98 53 chr5 44651356 44651755 -107885504 + MTD LTR MaLR 3 419 0 2 925 499 239 0 17 chr5 44652054 44652173 -107885086 - MLT1A1 LTR MaLR 0 408 292 2 925 327 257 74 28 chr5 44652265 44652373 -107884886 - MLT1A1 LTR MaLR -295 113 1 2 925 270 83 83 0 chr5 44652375 44652423 -107884836 - MLT2B1 LTR ERVL -1 566 515 2 925 216 167 0 0 chr5 44652458 44652494 -107884765 + (CCTG)n Simple_repeat Simple_repeat 1 36 0 2 925 532 309 156 15 chr5 44652573 44652836 -107884423 - MLT2D LTR ERVL -110 304 5 2 925 684 36 0 0 chr5 44652944 44653027 -107884232 + (TCCC)n Simple_repeat Simple_repeat 3 85 0 2 925 393 123 0 0 chr5 44653558 44653623 -107883636 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 925 2494 52 3 3 chr5 44653715 44654098 -107883161 + L1_Mus1 LINE L1 6256 6567 0 2 925 314 251 0 0 chr5 44654551 44654630 -107882629 - L1ME2z LINE L1 -267 5897 5819 2 925 231 237 34 0 chr5 44654783 44654842 -107882417 - L1ME2z LINE L1 -419 5743 5683 2 925 328 289 115 11 chr5 44654945 44655224 -107882035 - L1ME2z LINE L1 -646 5518 5198 2 925 534 304 92 14 chr5 44655307 44655524 -107881735 - B4A SINE B4 -2 290 57 2 925 5340 72 0 0 chr5 44655958 44656638 -107880621 - L1Md_T LINE L1 0 6582 5903 2 925 258 246 45 53 chr5 44656638 44656751 -107880508 - L1ME2z LINE L1 -1306 4840 4729 2 925 21 0 0 0 chr5 44657153 44657174 -107880085 + AT_rich Low_complexity Low_complexity 1 21 0 2 925 444 248 6 173 chr5 44657304 44657404 -107879855 + ID_B1 SINE B4 86 173 -51 2 925 865 174 174 0 chr5 44657404 44657588 -107879671 + B3 SINE B2 1 216 0 2 925 444 248 6 173 chr5 44657588 44657643 -107879616 + ID_B1 SINE B4 174 215 -9 2 925 289 277 76 76 chr5 44658315 44658721 -107878538 + L1ME3A LINE L1 5529 5924 -316 2 925 25 0 0 0 chr5 44659135 44659160 -107878099 + AT_rich Low_complexity Low_complexity 1 25 0 2 925 2687 43 0 18 chr5 44659161 44659214 -107878045 - L1Md_F2 LINE L1 -14 6568 6521 2 925 3590 20 0 0 chr5 44659214 44659610 -107877649 - MTA_Mm LTR MaLR 0 396 1 2 925 2687 43 0 18 chr5 44659610 44659889 -107877370 - L1Md_F2 LINE L1 -62 6520 6242 2 925 1127 41 4 31 chr5 44660544 44660782 -107876477 + (CA)n Simple_repeat Simple_repeat 1 231 0 2 925 395 253 96 51 chr5 44661195 44661243 -107876016 - ORR1E LTR MaLR -3 376 312 2 925 555 16 0 0 chr5 44661243 44661307 -107875952 + (GGAA)n Simple_repeat Simple_repeat 3 66 0 2 925 680 270 105 21 chr5 44661307 44661563 -107875696 - ORR1E LTR MaLR -67 312 2 2 925 317 313 168 20 chr5 44662400 44662758 -107874501 + L1M5 LINE L1 3078 3488 -2658 2 925 250 271 11 34 chr5 44662771 44662859 -107874400 + RMER15 LTR ERVL 1 86 -489 2 925 756 121 13 60 chr5 44663609 44663758 -107873501 - B2_Mm2 SINE B2 0 195 54 2 925 573 116 0 0 chr5 44663760 44663846 -107873413 + B1_Mur3 SINE Alu 30 115 -34 2 925 373 91 0 18 chr5 44663844 44663900 -107873359 - B2_Mm2 SINE B2 -140 55 1 2 925 1156 156 19 0 chr5 44664555 44664760 -107872499 + MTC LTR MaLR 6 214 -207 2 925 2050 170 35 15 chr5 44664770 44665170 -107872089 - MTC LTR MaLR -13 408 1 2 925 5054 150 98 105 chr5 44665170 44665318 -107871941 - MTC-int LTR MaLR 0 1258 1085 2 925 4889 119 21 16 chr5 44665318 44666045 -107871214 + Lx4A LINE L1 6326 7055 -3 2 925 5054 150 98 105 chr5 44666045 44666121 -107871138 - MTC-int LTR MaLR -174 1084 1062 2 925 1389 77 16 0 chr5 44666121 44666303 -107870956 - B2_Mm2 SINE B2 -9 186 2 2 925 5054 150 98 105 chr5 44666303 44667328 -107869931 - MTC-int LTR MaLR -197 1061 16 2 925 1997 146 77 33 chr5 44667330 44667720 -107869539 - MTC LTR MaLR 0 407 1 2 925 681 216 29 0 chr5 44667728 44667867 -107869392 + MTC LTR MaLR 279 421 0 2 925 490 276 125 30 chr5 44667880 44668048 -107869211 + B4A SINE B4 105 288 -4 2 925 947 226 31 0 chr5 44668440 44668635 -107868624 + B3 SINE B2 1 201 -15 2 925 1122 301 78 3 chr5 44669509 44669869 -107867390 + Lx8 LINE L1 6592 6978 -495 2 925 386 307 84 81 chr5 44669919 44670192 -107867067 + Lx8 LINE L1 6926 7199 -274 2 925 288 0 0 0 chr5 44670199 44670231 -107867028 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 2 925 237 236 75 83 chr5 44670246 44670366 -107866893 + Lx8 LINE L1 7353 7471 -2 2 925 34 55 0 0 chr5 44670366 44670421 -107866838 + AT_rich Low_complexity Low_complexity 1 55 0 2 925 1360 62 51 0 chr5 44670944 44671121 -107866138 + B2_Mm1a SINE B2 1 186 -7 2 925 715 298 96 46 chr5 44671255 44671579 -107865680 + ORR1E LTR MaLR 2 341 -18 2 925 207 176 0 0 chr5 44671723 44671757 -107865502 + GA-rich Low_complexity Low_complexity 2 35 0 2 925 712 105 61 6 chr5 44671977 44672140 -107865119 + CT-rich Low_complexity Low_complexity 4 175 0 2 925 524 289 69 45 chr5 44672579 44672825 -107864434 - MLT1C LTR MaLR -3 464 213 2 925 510 247 104 40 chr5 44672906 44673079 -107864180 - B3A SINE B2 -9 189 6 2 925 291 239 108 18 chr5 44673080 44673191 -107864068 - MLT1C LTR MaLR -291 176 56 2 925 1685 197 49 11 chr5 44673364 44673733 -107863526 - ORR1C2 LTR MaLR 0 384 2 2 925 2294 142 19 6 chr5 44673978 44674339 -107862920 + ORR1B2 LTR MaLR 2 367 0 2 925 211 231 0 0 chr5 44677253 44677305 -107859954 + B1_Mus1 SINE Alu 5 56 -92 2 925 201 210 0 0 chr5 44677330 44677392 -107859867 + GA-rich Low_complexity Low_complexity 2 63 0 2 925 522 241 6 0 chr5 44677405 44677719 -107859540 + GA-rich Low_complexity Low_complexity 1 316 0 2 925 459 206 14 5 chr5 44677721 44677820 -107859439 + B1_Mus2 SINE Alu 41 136 -13 2 925 399 56 0 0 chr5 44678385 44678439 -107858820 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 925 380 61 23 58 chr5 44679803 44679890 -107857369 + (CAAA)n Simple_repeat Simple_repeat 2 85 0 2 925 192 217 0 0 chr5 44679975 44680021 -107857238 + CT-rich Low_complexity Low_complexity 2 47 0 2 925 747 159 22 0 chr5 44680313 44680451 -107856808 + B1_Mus1 SINE Alu 7 147 -1 2 925 697 149 0 0 chr5 44680482 44680596 -107856663 - Lx7 LINE L1 -16 7680 7567 2 925 967 246 23 142 chr5 44680696 44681127 -107856132 - Lx7 LINE L1 -122 7574 7195 2 925 29672 111 31 24 chr5 44681137 44686202 -107851057 - Lx4A LINE L1 -2 7056 1935 2 925 1202 75 0 0 chr5 44686202 44686349 -107850910 - B1_Mus1 SINE Alu 0 148 2 2 925 29672 129 36 46 chr5 44686349 44687500 -107849759 - Lx4A LINE L1 -3943 1934 739 2 925 12139 151 53 159 chr5 44687502 44687673 -107849586 - L1_Mur3 LINE L1 -1333 4547 4364 2 925 3385 133 16 40 chr5 44687673 44688250 -107849009 + Lx LINE L1 6092 6654 0 2 925 12139 151 53 159 chr5 44688250 44689499 -107847760 - L1_Mur3 LINE L1 -1517 4363 3284 2 925 1723 142 92 122 chr5 44689499 44689989 -107847270 + IAPLTR2_Mm LTR ERVK 1 475 0 2 925 12139 151 53 159 chr5 44689989 44691046 -107846213 - L1_Mur3 LINE L1 -2597 3283 2528 2 925 1928 120 31 31 chr5 44691046 44691373 -107845886 + ORR1A2 LTR MaLR 1 327 0 2 925 12139 171 63 109 chr5 44691373 44693728 -107843531 - L1_Mur3 LINE L1 -3353 2527 82 2 925 317 319 35 28 chr5 44693735 44693877 -107843382 + MLT1C LTR MaLR 39 181 -286 2 925 251 265 0 56 chr5 44693906 44693978 -107843281 + B1F SINE Alu 77 144 -5 2 925 26 23 0 23 chr5 44695013 44695039 -107842220 + AT_rich Low_complexity Low_complexity 1 26 0 2 925 577 261 15 7 chr5 44695039 44695174 -107842085 - B1_Mur1 SINE Alu -13 136 1 2 925 26 23 0 23 chr5 44695174 44695191 -107842068 + AT_rich Low_complexity Low_complexity 1 17 0 2 925 351 65 0 0 chr5 44695191 44695237 -107842022 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 926 372 43 0 0 chr5 44696092 44696138 -107841121 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 926 291 243 80 13 chr5 44697410 44697485 -107839774 - ID4_ SINE ID -2 81 2 2 926 394 297 22 108 chr5 44697494 44697679 -107839580 - MTEb LTR MaLR -209 170 2 3 926 263 222 0 27 chr5 44697770 44697844 -107839415 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 3 926 396 0 0 0 chr5 44697847 44697891 -107839368 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 926 311 80 0 39 chr5 44698581 44698633 -107838626 + (CCCCG)n Simple_repeat Simple_repeat 4 53 0 3 926 549 0 0 0 chr5 44700240 44700301 -107836958 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 926 457 283 41 32 chr5 44700390 44700609 -107836650 - L1_Mur3 LINE L1 -1296 4584 4364 3 926 387 265 39 57 chr5 44700611 44700783 -107836476 - L1M2 LINE L1 -1908 4232 4038 3 926 827 267 201 20 chr5 44700802 44701086 -107836173 - L1M2 LINE L1 -2300 3843 3496 3 926 180 0 0 0 chr5 44701086 44701106 -107836153 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 926 827 267 201 20 chr5 44701106 44701468 -107835791 - L1M2 LINE L1 -2648 3495 3082 3 926 259 327 74 19 chr5 44701484 44701587 -107835672 - B3 SINE B2 -35 163 54 3 926 480 295 139 21 chr5 44701620 44701814 -107835445 + MTEb LTR MaLR 125 341 -38 3 926 1140 261 98 28 chr5 44701842 44702299 -107834960 + L1MC3 LINE L1 7257 7745 -40 3 926 953 249 57 23 chr5 44702360 44702623 -107834636 + B4 SINE B4 3 274 -18 3 926 247 254 18 0 chr5 44702689 44702744 -107834515 + GA-rich Low_complexity Low_complexity 4 59 0 3 926 2191 68 0 0 chr5 44702910 44703191 -107834068 - L1_Mm LINE L1 -1176 4707 4427 3 926 19865 33 0 0 chr5 44703189 44706194 -107831065 - L1Md_T LINE L1 -1 6581 3577 3 926 8716 22 0 0 chr5 44706187 44707382 -107829877 - L1Md_T LINE L1 0 6582 5388 3 926 17220 94 17 4 chr5 44707379 44710549 -107826710 - L1Md_T LINE L1 -2283 3600 388 3 926 305 297 22 45 chr5 44710775 44710909 -107826350 + MIR SINE MIR 102 232 -30 3 926 266 293 51 17 chr5 44711434 44711552 -107825707 + MIR SINE MIR 112 233 -29 3 926 207 217 22 0 chr5 44713779 44713825 -107823434 + MIR SINE MIR 104 150 -112 3 926 206 259 34 17 chr5 44713966 44714025 -107823234 + L2b LINE L2 3095 3154 -221 3 926 1993 39 0 79 chr5 44714174 44714452 -107822807 + L1_Mus2 LINE L1 6305 6560 -6 3 926 3627 61 7 2 chr5 44714448 44714909 -107822350 + L1_Mus1 LINE L1 6104 6566 -1 3 926 711 0 0 0 chr5 44714938 44715017 -107822242 + (CAAAC)n Simple_repeat Simple_repeat 2 80 0 3 926 830 257 24 10 chr5 44715017 44715225 -107822034 - B3 SINE B2 0 216 6 3 926 199 345 58 8 chr5 44718363 44718483 -107818776 + MIR SINE MIR 104 229 -33 3 926 368 347 14 0 chr5 44718999 44719143 -107818116 + MIRb SINE MIR 64 209 -59 3 926 268 250 41 14 chr5 44719203 44719276 -107817983 + GA-rich Low_complexity Low_complexity 3 77 0 3 926 1774 141 3 10 chr5 44719529 44719823 -107817436 - Lx4B LINE L1 -273 6785 6494 3 926 1201 199 79 12 chr5 44719819 44720073 -107817186 + Lx4B LINE L1 6788 7058 0 3 926 7635 131 7 13 chr5 44720193 44721422 -107815837 - L1_Mur2 LINE L1 -1099 4778 3557 3 926 7165 118 35 2 chr5 44721414 44723221 -107814038 + L1_Mus4 LINE L1 4775 6636 0 3 926 595 163 0 0 chr5 44723465 44723557 -107813702 - B3 SINE B2 -123 93 2 3 926 1229 70 0 0 chr5 44723809 44723952 -107813307 + B1_Mus2 SINE Alu 2 144 -3 3 926 624 62 0 0 chr5 44723953 44724034 -107813225 + (GAAA)n Simple_repeat Simple_repeat 3 83 0 3 926 2157 143 0 7 chr5 44724111 44724421 -107812838 - RLTR10E LTR ERVK -3 308 1 3 926 6439 109 1 107 chr5 44724421 44725490 -107811769 - MMERVK10C-int LTR ERVK 0 7581 6626 3 926 1892 153 51 7 chr5 44725498 44725793 -107811466 + RLTR10E LTR ERVK 1 308 -3 3 926 1033 198 67 5 chr5 44725863 44726056 -107811203 + B3 SINE B2 1 205 -11 3 926 1225 68 7 0 chr5 44726067 44726213 -107811046 + B1_Mm SINE Alu 1 147 0 3 926 205 103 77 0 chr5 44726213 44726252 -107811007 + A-rich Low_complexity Low_complexity 4 45 0 3 926 2206 40 0 0 chr5 44726648 44726895 -107810364 - L1_Mus1 LINE L1 -1 6566 6320 3 926 265 189 19 0 chr5 44727130 44727183 -107810076 + L1MEc LINE L1 262 315 -6085 3 926 903 111 0 46 chr5 44728354 44728505 -107808754 - L1_Mus1 LINE L1 0 6567 6424 3 926 262 310 121 14 chr5 44728783 44728956 -107808303 - L2a LINE L2 -9 3417 3181 3 926 261 140 0 0 chr5 44729108 44729165 -107808094 + (T)n Simple_repeat Simple_repeat 1 57 0 3 926 301 252 32 98 chr5 44729513 44729636 -107807623 - PB1D10 SINE Alu 0 117 3 3 926 793 317 16 0 chr5 44730406 44730649 -107806610 - MLT1D LTR MaLR -2 503 257 3 926 264 308 34 17 chr5 44730731 44730850 -107806409 - MLT1D LTR MaLR -291 214 94 3 926 678 256 66 12 chr5 44730959 44731125 -107806134 - B3A SINE B2 -16 182 8 3 926 21 82 0 0 chr5 44731173 44731222 -107806037 + AT_rich Low_complexity Low_complexity 1 49 0 3 926 272 108 0 0 chr5 44731251 44731288 -107805971 + MusHAL1 LINE L1 1070 1106 -1606 3 926 820 167 55 18 chr5 44731309 44731338 -107805921 - L1_Mus3 LINE L1 0 6638 6612 3 926 1143 96 7 0 chr5 44731338 44731484 -107805775 - B1_Mus2 SINE Alu 0 147 1 3 926 820 167 55 18 chr5 44731484 44731619 -107805640 - L1_Mus3 LINE L1 -27 6611 6468 3 926 255 260 143 24 chr5 44733635 44733761 -107803498 - L1ME3A LINE L1 -255 5918 5778 3 926 3134 157 62 46 chr5 44733851 44734346 -107802913 - RMER15 LTR ERVL 0 575 71 3 926 234 0 0 0 chr5 44734346 44734372 -107802887 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 926 3134 157 62 46 chr5 44734372 44734438 -107802821 - RMER15 LTR ERVL -505 70 5 3 926 630 279 10 87 chr5 44734884 44735092 -107802167 + B3A SINE B2 4 195 -3 3 926 254 203 98 0 chr5 44735490 44735572 -107801687 - L1ME3A LINE L1 -804 5487 5386 3 926 180 0 0 0 chr5 44735572 44735592 -107801667 + (T)n Simple_repeat Simple_repeat 1 20 0 3 926 811 300 200 9 chr5 44735676 44735916 -107801343 - L1ME3A LINE L1 -848 5298 5035 3 926 195 69 0 0 chr5 44735916 44735945 -107801314 + (TTA)n Simple_repeat Simple_repeat 3 31 0 3 926 811 300 200 9 chr5 44735945 44736229 -107801030 - L1ME3A LINE L1 -1112 5034 4674 3 926 37 0 0 0 chr5 44736229 44736266 -107800993 + AT_rich Low_complexity Low_complexity 1 37 0 3 926 537 88 0 0 chr5 44736267 44736347 -107800912 + (TA)n Simple_repeat Simple_repeat 1 80 0 3 926 669 301 17 22 chr5 44736347 44736527 -107800732 - B3A SINE B2 -16 182 4 3 926 890 144 13 20 chr5 44736590 44736739 -107800520 + B1_Mur4 SINE Alu 3 150 0 3 926 180 135 0 0 chr5 44736759 44736796 -107800463 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 3 926 1154 228 34 100 chr5 44737087 44737526 -107799733 + Lx9 LINE L1 7235 7644 0 3 926 885 246 68 0 chr5 44737544 44737735 -107799524 - B3 SINE B2 -11 205 2 3 926 519 17 0 0 chr5 44737771 44737831 -107799428 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 926 673 286 31 20 chr5 44737834 44738030 -107799229 - B4 SINE B4 -2 290 93 3 926 898 289 109 26 chr5 44738423 44739004 -107798255 - L1ME3A LINE L1 -3529 2617 1982 3 926 297 309 81 9 chr5 44739027 44739138 -107798121 - LTR16A1 LTR ERVL -12 444 326 3 926 310 115 128 0 chr5 44739195 44739273 -107797986 + Lx4B LINE L1 6966 7053 -5 3 926 989 138 14 7 chr5 44739830 44739976 -107797283 + B1_Mur4 SINE Alu 4 150 0 3 926 259 300 36 48 chr5 44740139 44740223 -107797036 - MLT1E2 LTR MaLR -544 83 1 3 926 1069 289 19 67 chr5 44740741 44741115 -107796144 - ORR1E LTR MaLR 0 359 4 3 926 193 263 18 0 chr5 44741115 44741172 -107796087 + MIR SINE MIR 100 157 -105 3 926 2266 38 8 4 chr5 44741283 44741548 -107795711 - L1Md_F3 LINE L1 -1 6583 6318 3 926 29 0 0 0 chr5 44741871 44741900 -107795359 + GC_rich Low_complexity Low_complexity 1 29 0 3 926 1041 288 25 7 chr5 44742581 44742864 -107794395 - B4 SINE B4 -4 288 1 3 926 252 0 0 0 chr5 44743030 44743058 -107794201 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 926 372 333 18 0 chr5 44743092 44743206 -107794053 + PB1D10 SINE Alu 1 116 -1 3 926 351 0 0 0 chr5 44743218 44743257 -107794002 + (TAA)n Simple_repeat Simple_repeat 2 40 0 3 926 904 136 6 6 chr5 44743399 44743576 -107793683 + (GA)n Simple_repeat Simple_repeat 2 178 0 3 926 1503 86 5 0 chr5 44744419 44744605 -107792654 - B2_Mm1t SINE B2 -5 188 2 3 926 769 48 0 9 chr5 44747375 44747481 -107789778 - L1Md_T LINE L1 0 6582 6478 3 926 642 251 150 21 chr5 44747505 44747692 -107789567 - B3 SINE B2 -5 211 1 3 926 279 122 0 0 chr5 44748238 44748287 -107788972 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 3 926 547 277 63 11 chr5 44748306 44748496 -107788763 - MLT1B LTR MaLR 0 390 191 3 926 260 246 49 0 chr5 44748500 44748561 -107788698 + polypurine Low_complexity Low_complexity 2 65 0 3 926 522 300 122 33 chr5 44748950 44749195 -107788064 - LTR16A1 LTR ERVL -15 441 175 3 926 6396 71 8 4 chr5 44749337 44750132 -107787127 - L1Md_F2 LINE L1 -2 6580 5783 3 926 8568 40 0 0 chr5 44750136 44751433 -107785826 - L1Md_T LINE L1 0 6582 5285 3 926 879 322 19 15 chr5 44751980 44752248 -107785011 - MTE2b LTR MaLR -110 269 1 3 926 386 306 106 61 chr5 44752325 44752523 -107784736 - HERV16-int LTR ERVL -2402 2594 2388 3 926 429 20 0 0 chr5 44752625 44752675 -107784584 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 3 926 3440 171 169 18 chr5 44752675 44753409 -107783850 - Lx4B LINE L1 -37 7021 6177 3 926 395 332 152 60 chr5 44753409 44753909 -107783350 - HERV16-int LTR ERVL -2760 2236 1691 3 926 32 26 0 0 chr5 44755072 44755111 -107782148 + AT_rich Low_complexity Low_complexity 1 39 0 3 926 444 37 0 0 chr5 44755229 44755283 -107781976 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 926 3772 228 90 57 chr5 44755300 44756355 -107780904 - Lx9 LINE L1 -185 7459 6370 3 926 279 248 61 24 chr5 44756472 44756637 -107780622 + L1M5 LINE L1 5322 5492 -681 3 926 1815 159 33 142 chr5 44756640 44757064 -107780195 - ORR1B2 LTR MaLR 0 378 1 3 926 610 276 139 9 chr5 44757582 44757812 -107779447 + MLT1A0 LTR MaLR 106 365 0 3 926 227 357 70 87 chr5 44757838 44758010 -107779249 + MamGypLTR3 LTR Gypsy 265 433 -406 3 926 411 273 26 26 chr5 44759132 44759245 -107778014 + MTEa LTR MaLR 1 113 -266 3 926 279 335 97 34 chr5 44759245 44759308 -107777951 + MT2A LTR ERVL 1 187 -346 3 926 695 271 76 97 chr5 44759452 44759865 -107777394 + RMER13A LTR ERVK 115 549 -359 4 926 348 155 23 23 chr5 44760177 44760263 -107776996 + CT-rich Low_complexity Low_complexity 2 87 0 4 926 523 82 35 0 chr5 44760345 44760430 -107776829 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 4 926 476 59 0 14 chr5 44761735 44761804 -107775455 + (TTCA)n Simple_repeat Simple_repeat 4 71 0 4 926 186 43 0 0 chr5 44761850 44761873 -107775386 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 926 1028 234 166 31 chr5 44762424 44762750 -107774509 - ORR1D2 LTR MaLR 0 370 1 4 926 429 20 0 0 chr5 44762902 44762952 -107774307 + (TC)n Simple_repeat Simple_repeat 2 51 0 4 926 1075 53 0 0 chr5 44762952 44763084 -107774175 - B1_Mm SINE Alu -9 138 7 4 926 318 335 82 67 chr5 44763100 44763500 -107773759 + MLT1H LTR MaLR 42 530 -49 4 926 184 271 34 0 chr5 44764244 44764303 -107772956 - L2 LINE L2 -545 2874 2814 4 926 944 309 128 12 chr5 44764565 44764994 -107772265 + MER31A LTR ERV1 1 479 -6 4 926 468 0 0 0 chr5 44765462 44765514 -107771745 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 926 691 307 23 41 chr5 44765824 44765950 -107771309 - B4A SINE B4 0 292 171 4 926 2282 182 26 3 chr5 44765950 44766335 -107770924 - ORR1B1 LTR MaLR 0 394 1 4 926 691 307 23 41 chr5 44766335 44766429 -107770830 - B4A SINE B4 -122 170 76 4 926 352 260 87 81 chr5 44766853 44767052 -107770207 - B4 SINE B4 -4 288 2 4 926 207 366 29 37 chr5 44767545 44767681 -107769578 - L3b LINE CR1 -158 324 190 4 926 201 314 128 32 chr5 44767887 44768012 -107769247 - MIRb SINE MIR -9 259 123 4 926 735 257 0 0 chr5 44768449 44768589 -107768670 - B1_Mur1 SINE Alu -8 141 2 4 926 246 217 0 0 chr5 44769623 44769669 -107767590 + MTE2b LTR MaLR 6 51 -328 4 926 534 276 57 13 chr5 44769760 44769918 -107767341 + MTD LTR MaLR 253 417 -2 4 926 271 304 109 24 chr5 44770915 44771080 -107766179 - MER3 DNA MER1_type -28 181 3 4 926 2470 142 77 51 chr5 44771556 44772010 -107765249 + RMER4A LTR ERVK 1 466 0 4 926 1389 250 132 31 chr5 44772545 44773220 -107764039 + Lx6 LINE L1 6629 7371 -89 4 926 516 209 60 17 chr5 44773522 44773639 -107763620 - B1F SINE Alu -6 143 22 4 926 258 314 21 110 chr5 44773699 44773828 -107763431 + PB1 SINE Alu 4 140 -9 4 926 855 290 95 27 chr5 44773987 44774281 -107762978 + MER21B LTR ERV1 1 314 -549 4 926 306 291 0 118 chr5 44775993 44776145 -107761114 - Charlie12 DNA MER1_type -2732 141 8 4 926 265 271 135 26 chr5 44776307 44776500 -107760759 + Charlie5 DNA MER1_type 2395 2608 -16 4 926 223 283 88 39 chr5 44776757 44776898 -107760361 - MIR SINE MIR -48 228 75 4 926 610 281 8 0 chr5 44777176 44777304 -107759955 + RSINE1 SINE B4 11 139 -26 4 926 216 0 0 0 chr5 44777305 44777329 -107759930 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 926 1053 268 34 48 chr5 44778274 44778568 -107758691 - B4 SINE B4 0 292 3 4 926 283 286 37 68 chr5 44778889 44779080 -107758179 + LTR85b LTR Gypsy? 272 456 -328 4 926 308 283 110 10 chr5 44779317 44779417 -107757842 + B4 SINE B4 183 292 0 4 926 786 48 0 0 chr5 44779550 44779653 -107757606 + (TC)n Simple_repeat Simple_repeat 1 103 0 4 926 351 0 0 0 chr5 44779922 44779961 -107757298 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 926 333 228 0 60 chr5 44780717 44780801 -107756458 + B3A SINE B2 1 79 -119 4 926 33 0 0 0 chr5 44781572 44781605 -107755654 + AT_rich Low_complexity Low_complexity 1 33 0 4 926 307 364 66 24 chr5 44781973 44782184 -107755075 + MTEb LTR MaLR 1 220 -159 4 926 232 194 162 15 chr5 44782184 44782225 -107755034 - L1M2 LINE L1 -967 5176 5136 4 926 281 26 0 26 chr5 44782225 44782264 -107754995 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 926 232 194 162 15 chr5 44782264 44782290 -107754969 - L1M2 LINE L1 -1008 5135 5099 4 926 539 288 38 86 chr5 44782396 44782473 -107754786 - B4A SINE B4 0 292 226 4 926 441 0 0 0 chr5 44782473 44782522 -107754737 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 4 926 539 288 38 86 chr5 44782522 44782630 -107754629 - B4A SINE B4 -67 225 118 4 926 377 408 52 11 chr5 44782595 44782865 -107754394 + MT2A LTR ERVL 181 461 -72 4 926 333 0 0 0 chr5 44782882 44782919 -107754340 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 926 319 279 8 69 chr5 44783134 44783265 -107753994 + HAL1 LINE L1 791 913 -1594 4 926 24 32 0 0 chr5 44783345 44783376 -107753883 + AT_rich Low_complexity Low_complexity 1 31 0 4 926 577 69 0 22 chr5 44783557 44783646 -107753613 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 4 926 1067 173 10 20 chr5 44783706 44783901 -107753358 - B3 SINE B2 -23 193 1 4 926 423 314 83 45 chr5 44783924 44784411 -107752848 + HAL1 LINE L1 1390 1941 -566 4 926 387 41 0 0 chr5 44784631 44784680 -107752579 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 926 495 0 0 0 chr5 44784680 44784734 -107752525 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 926 2048 51 232 3 chr5 44784754 44785051 -107752208 - L1_Mus3 LINE L1 -508 6130 5766 4 926 3722 96 28 18 chr5 44785051 44785559 -107751700 + L1_Mus3 LINE L1 6120 6632 -6 4 926 546 16 0 0 chr5 44785578 44785641 -107751618 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 4 926 2088 182 78 12 chr5 44786453 44787018 -107750241 + RMER19B LTR ERVK 1 890 -12 4 926 702 300 6 17 chr5 44787307 44787480 -107749779 + B3A SINE B2 1 171 -27 4 926 727 257 96 37 chr5 44787683 44787901 -107749358 - MTE2a LTR MaLR -100 279 49 4 926 225 232 101 34 chr5 44788191 44788280 -107748979 - MER57F LTR ERV1 -319 117 23 4 926 710 162 36 83 chr5 44788229 44788397 -107748862 - RMER20B LTR ERVK -467 160 1 4 926 253 304 32 21 chr5 44788399 44788493 -107748766 - MTD LTR MaLR -319 100 6 4 926 315 218 24 82 chr5 44789156 44789241 -107748018 - ID4 SINE ID 0 83 4 4 926 210 308 39 0 chr5 44789376 44789454 -107747805 - MER5A DNA MER1_type -29 160 80 4 926 208 331 92 35 chr5 44789526 44789667 -107747592 + MIRb SINE MIR 85 233 -35 4 926 437 288 127 118 chr5 44789941 44790176 -107747083 - ORR1E LTR MaLR -17 342 97 4 926 1086 96 0 76 chr5 44790176 44790334 -107746925 - B1_Mus2 SINE Alu -1 146 1 4 926 437 288 127 118 chr5 44790334 44790437 -107746822 - ORR1E LTR MaLR -263 96 1 4 926 235 296 86 0 chr5 44791401 44791482 -107745777 + Tigger15a DNA TcMar 383 470 -245 4 926 645 275 112 29 chr5 44791488 44791882 -107745377 + MLT2B4 LTR ERVL 1 416 -48 4 926 356 309 56 48 chr5 44791951 44792182 -107745077 - L2a LINE L2 -5 3421 3189 4 926 677 275 10 35 chr5 44792296 44792496 -107744763 + Lx8 LINE L1 7088 7282 -191 4 926 252 0 0 0 chr5 44792497 44792525 -107744734 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 926 608 264 97 5 chr5 44792544 44792761 -107744498 - L1MD1 LINE L1 0 6242 6006 4 926 453 296 47 38 chr5 44792784 44793019 -107744240 - L1MD1 LINE L1 -466 5893 5657 4 926 854 201 10 82 chr5 44793055 44793261 -107743998 - B3A SINE B2 -6 192 2 4 926 423 0 0 0 chr5 44793293 44793340 -107743919 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 926 1652 293 118 24 chr5 44793350 44793543 -107743716 - L1MA4 LINE L1 -41 6259 6048 4 926 228 35 0 0 chr5 44793543 44793572 -107743687 + (C)n Simple_repeat Simple_repeat 1 29 0 4 926 1704 284 77 18 chr5 44793572 44794358 -107742901 - L1MA4 LINE L1 -253 6047 5185 4 926 357 24 0 0 chr5 44795217 44795259 -107742000 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 926 188 175 0 34 chr5 44795297 44795356 -107741903 + (CAGAGA)n Simple_repeat Simple_repeat 3 59 0 4 926 4494 100 22 0 chr5 44795592 44796233 -107741026 - L1_Mus3 LINE L1 -1180 4703 4049 4 926 1703 108 0 0 chr5 44796230 44796462 -107740797 + L1_Mus3 LINE L1 4707 4938 -945 4 926 213 39 0 0 chr5 44797969 44797995 -107739264 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 4 926 767 22 0 0 chr5 44797996 44798086 -107739173 - B1_Mm SINE Alu -13 134 45 4 926 7733 89 18 1 chr5 44798098 44799784 -107737475 + L1_Mus3 LINE L1 4923 6637 -1 4 926 3571 38 5 0 chr5 44800561 44800955 -107736304 - MTA_Mm LTR MaLR 0 396 1 4 926 9604 42 2 14 chr5 44800955 44802066 -107735193 - MTA_Mm-int LTR MaLR 0 1098 1 4 926 1271 39 0 0 chr5 44802066 44802219 -107735040 - MTA_Mm LTR MaLR 0 396 244 4 926 731 302 65 71 chr5 44802244 44802611 -107734648 + Lx8 LINE L1 7063 7427 -46 4 926 207 0 0 0 chr5 44803062 44803085 -107734174 + (TA)n Simple_repeat Simple_repeat 2 24 0 4 926 254 324 62 18 chr5 44803471 44803584 -107733675 + PB1D7 SINE Alu 3 120 0 4 926 207 0 0 0 chr5 44803595 44803618 -107733641 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 4 926 1340 54 0 0 chr5 44804298 44804464 -107732795 - L1_Mus1 LINE L1 0 6567 6402 4 926 465 193 22 22 chr5 44804544 44804634 -107732625 + B3 SINE B2 81 170 -46 4 926 464 234 14 92 chr5 44804767 44804785 -107732474 - MTE2a LTR MaLR -4 375 362 4 926 869 217 231 67 chr5 44804785 44805101 -107732158 - ORR1D1 LTR MaLR -4 370 3 4 926 464 234 14 92 chr5 44805101 44805223 -107732036 - MTE2a LTR MaLR -18 361 246 4 926 1207 191 62 18 chr5 44805237 44805529 -107731730 - RMER19C LTR ERVK -2 609 380 4 926 199 279 14 42 chr5 44806168 44806239 -107731020 - MIRb SINE MIR -28 240 172 4 926 492 18 0 0 chr5 44806242 44806299 -107730960 + (CAA)n Simple_repeat Simple_repeat 2 58 0 4 926 202 299 12 38 chr5 44806555 44806635 -107730624 + CT-rich Low_complexity Low_complexity 3 80 0 4 926 1071 241 34 47 chr5 44806858 44807154 -107730105 + B4A SINE B4 1 292 0 4 926 246 330 0 39 chr5 44807154 44807258 -107730001 + (CA)n Simple_repeat Simple_repeat 1 100 0 4 926 31 0 0 0 chr5 44809637 44809668 -107727591 + AT_rich Low_complexity Low_complexity 1 31 0 4 926 4514 64 0 0 chr5 44809669 44810200 -107727059 - L1_Mus1 LINE L1 0 6567 6037 4 926 449 300 176 16 chr5 44811018 44811211 -107726048 + MLT1A0 LTR MaLR 36 259 -106 4 926 4026 117 41 3 chr5 44811211 44812146 -107725113 - L1_Mur2 LINE L1 -4237 1640 669 4 926 239 230 0 121 chr5 44812511 44812709 -107724550 + (TCTG)n Simple_repeat Simple_repeat 4 177 0 4 926 39 22 0 0 chr5 44813041 44813087 -107724172 + AT_rich Low_complexity Low_complexity 1 46 0 4 926 324 250 25 0 chr5 44813360 44813440 -107723819 + B3A SINE B2 2 83 -115 5 926 681 128 16 8 chr5 44813620 44813746 -107723513 - L1_Mus3 LINE L1 -3 6635 6509 5 926 231 70 69 17 chr5 44814110 44814168 -107723091 + A-rich Low_complexity Low_complexity 4 64 0 5 926 257 270 147 45 chr5 44814251 44814449 -107722810 + MT2B LTR ERVL 53 270 -331 5 926 622 168 26 28 chr5 44814349 44814481 -107722778 + B1_Mur4 SINE Alu 6 150 0 5 926 225 0 0 0 chr5 44814612 44814637 -107722622 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 926 26 50 0 0 chr5 44814675 44814715 -107722544 + AT_rich Low_complexity Low_complexity 1 40 0 5 926 221 163 0 0 chr5 44814775 44814818 -107722441 + T-rich Low_complexity Low_complexity 2 44 0 5 926 272 276 68 2 chr5 44814979 44815102 -107722157 - PB1D10 SINE Alu -12 137 9 5 926 523 333 16 16 chr5 44817921 44818113 -107719146 - MLT1B LTR MaLR -7 383 192 5 926 229 330 42 42 chr5 44818305 44818400 -107718859 + MER5A1 DNA MER1_type 69 163 -3 5 926 984 104 6 18 chr5 44818962 44819129 -107718130 + (TTTC)n Simple_repeat Simple_repeat 1 165 0 5 926 411 171 0 0 chr5 44820021 44820097 -107717162 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 926 216 212 0 0 chr5 44820573 44820639 -107716620 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 926 643 64 45 0 chr5 44820657 44820767 -107716492 + (TATG)n Simple_repeat Simple_repeat 4 118 0 5 926 253 326 0 0 chr5 44821114 44821209 -107716050 - PB1D7 SINE Alu -1 119 25 5 926 642 26 0 0 chr5 44821289 44821365 -107715894 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 5 926 468 0 0 0 chr5 44821695 44821747 -107715512 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 926 266 319 149 32 chr5 44822246 44822434 -107714825 + MIR SINE MIR 47 256 -6 5 926 187 333 75 11 chr5 44822916 44823010 -107714249 - MER5A DNA MER1_type -7 182 83 5 926 283 379 37 6 chr5 44823086 44823248 -107714011 + MER5B DNA MER1_type 2 168 -10 5 926 377 339 107 59 chr5 44823490 44823995 -107713264 + MER68 LTR ERVL 3 531 -32 5 926 204 125 25 0 chr5 44824747 44824769 -107712490 + (TA)n Simple_repeat Simple_repeat 1 22 0 5 926 1195 96 0 0 chr5 44824769 44824915 -107712344 - B1_Mm SINE Alu -1 146 1 5 926 204 125 25 0 chr5 44824915 44824932 -107712327 + (TA)n Simple_repeat Simple_repeat 1 18 0 5 926 1087 112 49 6 chr5 44825072 44825234 -107712025 - B2_Mm2 SINE B2 -25 170 2 5 926 241 337 23 0 chr5 44825343 44825429 -107711830 - MIRb SINE MIR 0 268 181 5 926 563 40 0 13 chr5 44825811 44825886 -107711373 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 5 926 308 325 120 18 chr5 44826065 44826257 -107711002 + MIR SINE MIR 1 190 -72 5 926 220 265 113 42 chr5 44826512 44826583 -107710676 + ID4 SINE ID 2 77 -6 5 115 857 285 5 20 chr5 44826528 44826732 -107710527 + ID_B1 SINE B4 24 224 0 5 927 467 69 14 0 chr5 44826807 44826879 -107710380 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 5 927 646 280 47 11 chr5 44827215 44827406 -107709853 - B3A SINE B2 0 198 1 5 927 823 244 101 34 chr5 44827895 44828162 -107709097 + Lx8 LINE L1 7189 7473 0 5 927 224 282 0 25 chr5 44828229 44828309 -107708950 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 5 927 21 0 0 0 chr5 44828414 44828435 -107708824 + AT_rich Low_complexity Low_complexity 1 21 0 5 927 248 120 0 20 chr5 44828860 44828911 -107708348 + (GGGAGA)n Simple_repeat Simple_repeat 3 52 0 5 927 682 279 52 43 chr5 44829410 44829604 -107707655 + B3A SINE B2 1 203 -13 5 927 216 67 0 0 chr5 44829604 44829634 -107707625 + (CCA)n Simple_repeat Simple_repeat 3 32 0 5 927 647 279 52 43 chr5 44829634 44829649 -107707610 + B3 SINE B2 204 212 -4 5 927 862 199 11 47 chr5 44829817 44830007 -107707252 + B2_Mm2 SINE B2 5 187 -8 5 927 405 290 167 25 chr5 44830729 44830927 -107706332 + RMER15 LTR ERVL 336 561 -14 5 927 336 292 0 0 chr5 44832086 44832175 -107705084 + MIR SINE MIR 104 192 -70 5 927 333 364 27 20 chr5 44832564 44832710 -107704549 - MLT1N2 LTR MaLR -318 244 98 5 927 278 265 204 0 chr5 44834464 44834562 -107702697 + MER21B LTR ERV1 58 175 -688 5 927 611 297 93 29 chr5 44834626 44834947 -107702312 + MTD LTR MaLR 65 405 -14 5 927 456 67 0 0 chr5 44835070 44835130 -107702129 + (GGGA)n Simple_repeat Simple_repeat 2 61 0 5 927 274 357 20 48 chr5 44835151 44835298 -107701961 - ORR1E LTR MaLR -210 149 7 5 927 523 292 39 0 chr5 44835322 44835476 -107701783 + MER21B LTR ERV1 193 352 -511 5 927 315 312 110 17 chr5 44835673 44835846 -107701413 + MER21B LTR ERV1 618 806 -57 5 927 1043 287 25 64 chr5 44835892 44836250 -107701009 + MTE2b LTR MaLR 3 346 -33 5 927 836 222 112 25 chr5 44836297 44836537 -107700722 + ORR1D2 LTR MaLR 27 287 -83 5 927 977 202 80 32 chr5 44836538 44836788 -107700471 - Lx9 LINE L1 -10 7634 7373 5 927 480 165 10 10 chr5 44836789 44836887 -107700372 + ORR1D2 LTR MaLR 273 370 0 5 927 238 320 53 0 chr5 44836918 44836993 -107700266 - MLT1N2 LTR MaLR -388 79 1 5 927 257 75 25 0 chr5 44837057 44837097 -107700162 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 927 4275 241 95 9 chr5 44837695 44838818 -107698441 + Lx6 LINE L1 6222 7441 -19 5 927 41763 8 0 0 chr5 44838847 44844973 -107692286 - L1Md_A LINE L1 0 6582 457 5 927 471 259 68 34 chr5 44845237 44845385 -107691874 - B4A SINE B4 -4 288 136 5 927 264 250 132 0 chr5 44845401 44845477 -107691782 - B4A SINE B4 -202 90 5 5 927 361 240 8 40 chr5 44846318 44846444 -107690815 + RLTR15 LTR ERVK 4 125 -234 5 927 180 0 0 0 chr5 44846693 44846713 -107690546 + (CCTG)n Simple_repeat Simple_repeat 4 23 0 5 927 766 146 0 22 chr5 44846714 44846896 -107690363 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 5 927 21 0 0 0 chr5 44847368 44847389 -107689870 + AT_rich Low_complexity Low_complexity 1 21 0 5 927 980 92 46 0 chr5 44847541 44847694 -107689565 + B2_Mm2 SINE B2 2 161 -34 5 927 207 0 0 0 chr5 44847695 44847718 -107689541 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 927 601 287 48 25 chr5 44848288 44848549 -107688710 + Tigger7 DNA MER2_type 477 725 -8 5 927 721 315 140 29 chr5 44849078 44849556 -107687703 - MT2A LTR ERVL 0 533 3 5 927 29 70 0 0 chr5 44850068 44850125 -107687134 + AT_rich Low_complexity Low_complexity 1 57 0 5 927 2519 261 72 25 chr5 44850953 44851778 -107685481 - RCHARR1 DNA MER1_type -6 968 106 5 927 26 0 0 0 chr5 44852159 44852185 -107685074 + AT_rich Low_complexity Low_complexity 1 26 0 5 927 903 115 0 0 chr5 44852367 44852506 -107684753 + (CA)n Simple_repeat Simple_repeat 2 140 0 5 927 248 250 0 0 chr5 44852868 44852920 -107684339 - RSINE1 SINE B4 -76 89 38 5 927 21 0 0 0 chr5 44852939 44852960 -107684299 + AT_rich Low_complexity Low_complexity 1 21 0 5 927 326 23 23 0 chr5 44853885 44853928 -107683331 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 927 522 181 0 0 chr5 44854053 44854158 -107683101 + GA-rich Low_complexity Low_complexity 1 105 0 5 927 1766 217 45 41 chr5 44854326 44854744 -107682515 + MTC LTR MaLR 2 421 0 5 927 375 195 26 0 chr5 44854808 44854885 -107682374 - B3A SINE B2 -119 79 1 5 927 303 122 0 0 chr5 44854946 44854995 -107682264 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 927 23 0 0 0 chr5 44854995 44855018 -107682241 + AT_rich Low_complexity Low_complexity 1 23 0 5 927 348 216 26 13 chr5 44855018 44855173 -107682086 + (TA)n Simple_repeat Simple_repeat 2 158 0 5 927 328 173 12 24 chr5 44856760 44856843 -107680416 + GA-rich Low_complexity Low_complexity 1 82 0 5 927 295 254 14 0 chr5 44857285 44857356 -107679903 + MIRc SINE MIR 53 124 -144 5 927 836 252 52 67 chr5 44857932 44858259 -107679000 + RLTR14 LTR ERV1 61 382 0 5 927 363 287 126 78 chr5 44858259 44858656 -107678603 + RLTR14-int LTR ERV1 2 417 -4900 5 927 286 233 75 32 chr5 44858759 44858852 -107678407 + RLTR14-int LTR ERV1 461 557 -4760 5 927 230 268 84 0 chr5 44859142 44859213 -107678046 + MLT1G1 LTR MaLR 503 579 0 5 927 244 355 64 71 chr5 44859616 44859898 -107677361 + LTR16A1 LTR ERVL 168 447 -9 5 927 246 304 0 14 chr5 44860505 44860575 -107676684 + MLT1A0 LTR MaLR 35 103 -305 5 927 1037 263 82 31 chr5 44860590 44860908 -107676351 + Lx8 LINE L1 7070 7403 -70 5 927 7262 116 10 14 chr5 44860990 44862058 -107675201 + Lx4A LINE L1 5994 7057 -1 5 927 280 325 0 17 chr5 44862245 44862361 -107674898 + MLT1A0 LTR MaLR 252 365 0 5 927 2965 163 58 25 chr5 44862642 44863191 -107674068 - RMER1B Other Other -9 1057 491 5 927 23 0 0 0 chr5 44865045 44865068 -107672191 + AT_rich Low_complexity Low_complexity 1 23 0 5 927 26 0 0 0 chr5 44865945 44865971 -107671288 + GC_rich Low_complexity Low_complexity 1 26 0 5 927 219 69 0 0 chr5 44867222 44867251 -107670008 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 927 477 110 0 0 chr5 44867924 44867997 -107669262 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 927 1068 86 0 0 chr5 44871819 44871981 -107665278 + (CA)n Simple_repeat Simple_repeat 2 163 0 5 927 315 104 0 0 chr5 44873827 44873875 -107663384 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 927 345 47 0 0 chr5 44874548 44874591 -107662668 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 927 273 119 0 0 chr5 44875189 44875231 -107662028 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 927 204 111 0 0 chr5 44876222 44876258 -107661001 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 927 231 114 0 0 chr5 44876443 44876478 -107660781 + (CTAA)n Simple_repeat Simple_repeat 1 35 0 5 927 308 280 137 20 chr5 44876478 44876624 -107660635 - RSINE1 SINE B4 -1 164 2 5 927 272 345 0 0 chr5 44876635 44876719 -107660540 - B4A SINE B4 -207 85 2 5 927 376 261 41 104 chr5 44877088 44877268 -107659991 + Charlie10a DNA MER1_type 97 267 -13 5 927 223 332 119 15 chr5 44877889 44878091 -107659168 + MIRb SINE MIR 33 255 -13 5 927 623 306 109 19 chr5 44879388 44879736 -107657523 - MLT1C LTR MaLR -71 396 17 5 927 189 0 0 0 chr5 44879738 44879759 -107657500 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 5 927 189 377 61 9 chr5 44880128 44880243 -107657016 + MIR SINE MIR 40 160 -102 6 927 333 0 0 0 chr5 44880379 44880416 -107656843 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 927 438 239 64 0 chr5 44880818 44880927 -107656332 - MLT2C1 LTR ERVL -210 187 72 6 927 870 147 47 0 chr5 44881338 44881533 -107655726 + URR1B DNA MER1_type 5 225 0 6 927 1437 237 39 6 chr5 44881580 44881937 -107655322 + ORR1D2 LTR MaLR 1 369 -1 6 927 230 0 33 0 chr5 44883182 44883212 -107654047 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 927 678 303 69 49 chr5 44883319 44883565 -107653694 - B4 SINE B4 0 292 42 6 927 243 0 0 0 chr5 44888836 44888863 -107648396 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 927 798 166 17 0 chr5 44888863 44889038 -107648221 + (TA)n Simple_repeat Simple_repeat 2 179 0 6 927 432 0 0 0 chr5 44889834 44889882 -107647377 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 927 180 309 76 56 chr5 44890377 44890521 -107646738 - MIR SINE MIR -6 256 110 6 927 269 264 0 33 chr5 44890648 44890738 -107646521 - MTEb LTR MaLR -14 365 279 6 927 230 332 152 72 chr5 44891094 44891357 -107645902 - ORR1E LTR MaLR 0 359 76 6 927 4429 134 63 3 chr5 44891640 44892321 -107644938 + Lx2A LINE L1 6287 7008 0 6 927 234 281 109 50 chr5 44892459 44892560 -107644699 - MIRc SINE MIR -16 252 146 6 927 541 184 103 17 chr5 44894074 44894190 -107643069 - B1_Mur4 SINE Alu -24 126 1 6 927 243 337 71 31 chr5 44894854 44894952 -107642307 - L2a LINE L2 -44 3382 3281 6 927 612 265 78 18 chr5 44894982 44895201 -107642058 + MER2 DNA MER2_type 11 242 -103 6 927 2398 52 0 0 chr5 44895201 44895492 -107641767 - L1Md_F2 LINE L1 -252 6330 6040 6 927 1826 63 0 13 chr5 44895492 44895769 -107641490 + L1Md_F2 LINE L1 6348 6582 0 6 927 187 327 37 85 chr5 44896347 44896511 -107640748 - L2a LINE L2 -929 2490 2335 6 927 447 303 49 0 chr5 44896529 44896671 -107640588 + B4A SINE B4 42 190 -102 6 927 473 305 18 74 chr5 44896685 44896848 -107640411 + RSINE1 SINE B4 12 165 0 6 927 191 114 29 0 chr5 44896877 44896912 -107640347 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 927 2395 269 113 22 chr5 44898904 44899699 -107637560 + Lx8 LINE L1 6479 7343 -130 6 927 354 107 0 0 chr5 44899699 44899755 -107637504 + (ATG)n Simple_repeat Simple_repeat 3 58 0 6 927 2395 269 113 22 chr5 44899755 44899835 -107637424 + Lx8 LINE L1 7344 7433 -40 6 927 1868 138 0 0 chr5 44899845 44900134 -107637125 - L1_Mur2 LINE L1 -1310 4567 4279 6 927 2717 186 62 32 chr5 44900149 44900717 -107636542 + Lx5 LINE L1 6466 7050 0 6 927 2042 207 35 7 chr5 44900753 44901157 -107636102 - MTD LTR MaLR -1 418 4 6 927 3921 72 4 8 chr5 44902048 44902537 -107634722 + L1_Mus1 LINE L1 6081 6567 0 6 927 1008 117 0 0 chr5 44902545 44902699 -107634560 + (GAA)n Simple_repeat Simple_repeat 2 155 0 6 927 196 306 56 0 chr5 44903247 44903319 -107633940 + L2c LINE L2 3258 3333 -54 6 927 999 211 51 14 chr5 44904177 44904393 -107632866 - URR1B DNA MER1_type -1 224 1 6 927 23 0 0 0 chr5 44904876 44904899 -107632360 + AT_rich Low_complexity Low_complexity 1 23 0 6 927 221 344 139 0 chr5 44905208 44905330 -107631929 + L2c LINE L2 3247 3385 -2 6 927 1225 48 0 27 chr5 44905733 44905869 -107631390 + B1_Mm SINE Alu 1 136 -11 6 927 234 0 0 0 chr5 44905869 44905895 -107631364 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 927 1225 48 0 27 chr5 44905895 44905907 -107631352 + B1_Mm SINE Alu 137 145 -2 6 927 201 238 0 0 chr5 44906041 44906083 -107631176 + (CTCA)n Simple_repeat Simple_repeat 2 43 0 6 927 772 291 165 41 chr5 44906385 44906754 -107630505 - MTD LTR MaLR 0 419 5 6 927 657 302 15 5 chr5 44906962 44907165 -107630094 + L1MC1 LINE L1 5988 6192 -141 6 927 234 295 15 96 chr5 44907318 44907376 -107629883 - MER5B DNA MER1_type -53 125 70 6 927 4497 80 24 29 chr5 44907376 44907966 -107629293 + LTRIS_Mus LTR ERV1 1 587 0 6 927 234 295 15 96 chr5 44907966 44908042 -107629217 - MER5B DNA MER1_type -109 69 2 6 927 234 0 0 0 chr5 44908166 44908192 -107629067 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 6 927 551 15 0 14 chr5 44908196 44908265 -107628994 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 6 927 1204 51 0 0 chr5 44908266 44908404 -107628855 - B1_Mm SINE Alu -9 138 1 6 927 335 350 43 18 chr5 44908524 44908687 -107628572 + L2c LINE L2 3021 3187 -200 6 927 794 188 26 59 chr5 44908930 44909083 -107628176 + B1_Mur4 SINE Alu 3 150 0 6 927 191 145 25 50 chr5 44909083 44909163 -107628096 + A-rich Low_complexity Low_complexity 6 83 0 6 927 441 0 0 0 chr5 44910562 44910611 -107626648 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 927 321 353 101 39 chr5 44911665 44912001 -107625258 + L1M5 LINE L1 3873 4229 -1917 6 927 194 0 0 37 chr5 44912386 44912413 -107624846 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 6 927 226 189 0 0 chr5 44912694 44912731 -107624528 + tRNA-Ala-GCA tRNA tRNA 3 39 -36 6 927 277 188 76 30 chr5 44912748 44912814 -107624445 + L1M5 LINE L1 5303 5371 -2511 6 927 606 255 31 56 chr5 44912824 44913019 -107624240 - B3A SINE B2 -2 196 7 6 927 335 325 16 23 chr5 44913203 44913332 -107623927 - RSINE1 SINE B4 -36 129 2 6 927 23 0 0 0 chr5 44913627 44913650 -107623609 + AT_rich Low_complexity Low_complexity 1 23 0 6 927 1419 40 0 11 chr5 44913665 44913843 -107623416 - L1Md_F2 LINE L1 -2 6580 6405 6 927 1198 265 73 12 chr5 44915519 44915848 -107621411 - ORR1E LTR MaLR -7 352 4 6 927 269 259 0 45 chr5 44916826 44916915 -107620344 + GA-rich Low_complexity Low_complexity 1 85 0 6 927 4807 188 56 24 chr5 44916915 44917935 -107619324 + Lx5 LINE L1 5998 7050 0 6 927 241 398 8 8 chr5 44918127 44918256 -107619003 - Charlie10 DNA MER1_type -2607 215 87 6 927 504 132 0 0 chr5 44919078 44919161 -107618098 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 927 281 279 57 65 chr5 44919283 44919407 -107617852 - MIRb SINE MIR -79 189 57 6 927 607 199 105 105 chr5 44919618 44919809 -107617450 + B3A SINE B2 3 193 -5 6 927 3844 56 9 0 chr5 44922909 44923370 -107613889 - L1Md_F2 LINE L1 -1 6581 6117 6 927 290 258 11 0 chr5 44923384 44923473 -107613786 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 927 278 229 0 0 chr5 44923514 44923562 -107613697 - ID4_ SINE ID -14 69 22 6 927 317 271 118 27 chr5 44923583 44923693 -107613566 - B1F SINE Alu 0 149 30 6 927 306 0 0 0 chr5 44923784 44923818 -107613441 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 927 209 283 0 0 chr5 44928478 44928524 -107608735 + (TTG)n Simple_repeat Simple_repeat 3 48 0 6 927 204 182 0 0 chr5 44930702 44930746 -107606513 + GA-rich Low_complexity Low_complexity 5 48 0 6 927 335 41 0 20 chr5 44931026 44931076 -107606183 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 6 927 522 0 0 0 chr5 44931473 44931531 -107605728 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 927 276 261 0 0 chr5 44932189 44932235 -107605024 + tRNA-Ala-GCY_ tRNA tRNA 19 64 -11 6 927 274 282 0 14 chr5 44932235 44932261 -107604998 + ID4 SINE ID 25 95 -57 6 927 227 282 14 27 chr5 44935076 44935149 -107602110 + ORR1A1-int LTR MaLR 1181 1252 -540 6 927 1200 283 71 50 chr5 44936095 44936590 -107600669 - MLT1D LTR MaLR 0 505 1 6 927 395 301 52 17 chr5 44936650 44936765 -107600494 + PB1D7 SINE Alu 1 119 -1 6 927 531 31 0 0 chr5 44938224 44938289 -107598970 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 6 927 22 56 0 0 chr5 44938789 44938825 -107598434 + AT_rich Low_complexity Low_complexity 1 36 0 6 927 441 0 0 0 chr5 44939569 44939618 -107597641 + (TAA)n Simple_repeat Simple_repeat 1 49 0 6 927 21 0 0 0 chr5 44940272 44940293 -107596966 + AT_rich Low_complexity Low_complexity 1 21 0 6 927 3365 161 11 14 chr5 44940879 44941441 -107595818 - RLTR31_Mm LTR ERVK -1 560 1 6 927 459 144 57 33 chr5 44941912 44942034 -107595225 - Lx9 LINE L1 0 7644 7520 6 927 414 0 0 0 chr5 44942036 44942082 -107595177 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 927 458 248 271 0 chr5 44942082 44942237 -107595022 - Lx9 LINE L1 -168 7476 7280 6 927 316 374 18 94 chr5 44943042 44943213 -107594046 - B4A SINE B4 -123 169 12 6 927 749 182 119 45 chr5 44944797 44944998 -107592261 - B3 SINE B2 0 216 1 6 927 893 253 132 31 chr5 44946148 44946250 -107591009 - Tigger7 DNA MER2_type 0 2491 2377 6 927 210 37 0 0 chr5 44946250 44946277 -107590982 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 927 893 274 115 75 chr5 44946277 44946648 -107590611 - Tigger7 DNA MER2_type -115 2376 2134 6 927 873 270 65 25 chr5 44946648 44946925 -107590334 + Lx8 LINE L1 7004 7291 -182 6 927 215 278 61 45 chr5 44950089 44950221 -107587038 + MIRb SINE MIR 20 153 -115 6 927 22 0 0 0 chr5 44950282 44950304 -107586955 + AT_rich Low_complexity Low_complexity 1 22 0 6 927 614 164 337 42 chr5 44950304 44950470 -107586789 - B3 SINE B2 0 216 2 6 927 2665 72 55 16 chr5 44951452 44951819 -107585440 - L1Md_F2 LINE L1 0 6582 6202 6 927 204 40 0 0 chr5 44951907 44951932 -107585327 + (AACTG)n Simple_repeat Simple_repeat 2 26 0 6 927 604 319 0 6 chr5 44952154 44952315 -107584944 + RSINE1 SINE B4 2 161 -4 6 927 486 0 0 0 chr5 44953084 44953138 -107584121 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 927 1296 84 0 0 chr5 44953138 44953316 -107583943 + (GA)n Simple_repeat Simple_repeat 1 179 0 6 927 3634 75 0 5 chr5 44954933 44955375 -107581884 - L1_Mus1 LINE L1 0 6567 6128 6 927 1549 73 5 4 chr5 44955375 44955581 -107581678 + L1_Mus1 LINE L1 5708 5946 -210 6 927 426 380 36 20 chr5 44955589 44955785 -107581474 + MLT1F2 LTR MaLR 293 491 -69 6 927 2419 300 46 38 chr5 44955810 44956685 -107580574 + Lx8 LINE L1 6229 7110 -363 6 927 423 0 0 0 chr5 44957408 44957455 -107579804 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 927 534 197 0 0 chr5 44957457 44957574 -107579685 + GA-rich Low_complexity Low_complexity 2 118 0 6 928 381 316 41 35 chr5 44959475 44959672 -107577587 + MIR SINE MIR 36 233 -29 7 928 450 53 0 0 chr5 44961114 44961171 -107576088 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 928 309 319 0 0 chr5 44962259 44962403 -107574856 + (TG)n Simple_repeat Simple_repeat 1 144 0 7 928 697 162 20 0 chr5 44963246 44963394 -107573865 + GA-rich Low_complexity Low_complexity 1 151 0 7 928 431 221 191 32 chr5 44963395 44963521 -107573738 + B1F1 SINE Alu 3 148 -1 7 928 358 189 9 9 chr5 44963547 44963654 -107573605 + GA-rich Low_complexity Low_complexity 2 108 0 7 928 234 0 0 0 chr5 44963809 44963835 -107573424 + (GA)n Simple_repeat Simple_repeat 1 26 0 7 928 268 315 0 0 chr5 44964347 44964420 -107572839 + MER91B DNA Tip100 58 130 -60 7 928 981 84 14 14 chr5 44965259 44965403 -107571856 + L1Md_F2 LINE L1 6427 6570 -12 7 928 1113 272 107 26 chr5 44965788 44966320 -107570939 + L1MB8 LINE L1 5599 6173 -5 7 928 1176 257 88 34 chr5 44966716 44967067 -107570192 + ORR1D2 LTR MaLR 1 370 0 7 928 441 0 0 0 chr5 44967269 44967318 -107569941 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 928 688 229 6 88 chr5 44968578 44968760 -107568499 - B3 SINE B2 0 198 32 7 928 1719 289 23 19 chr5 44969870 44970347 -107566912 + Tigger7 DNA MER2_type 23 501 -1990 7 928 407 322 72 22 chr5 44970541 44970722 -107566537 - ID_B1 SINE B4 -33 191 2 7 928 455 245 72 31 chr5 44971905 44972002 -107565257 - RSINE1 SINE B4 -29 136 36 7 928 226 240 101 94 chr5 44974510 44974648 -107562611 + Charlie5 DNA MER1_type 1 139 -2485 7 928 249 188 15 15 chr5 44974683 44974748 -107562511 + Lx5 LINE L1 6986 7050 0 7 928 636 324 64 46 chr5 44974807 44975153 -107562106 + ORR1E LTR MaLR 6 357 -2 7 928 354 307 120 43 chr5 44975159 44975367 -107561892 + Charlie5 DNA MER1_type 229 452 -2172 7 928 255 292 0 0 chr5 44975575 44975640 -107561619 + (CAAA)n Simple_repeat Simple_repeat 4 68 0 7 928 651 210 136 40 chr5 44975661 44975963 -107561296 + Charlie5 DNA MER1_type 459 789 -1835 7 928 251 311 14 0 chr5 44976902 44976976 -107560283 + L2c LINE L2 3294 3368 -19 7 928 387 0 0 0 chr5 44978280 44978323 -107558936 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 928 266 298 179 22 chr5 44978598 44978732 -107558527 + MER20 DNA MER1_type 4 158 -61 7 928 297 329 80 6 chr5 44980039 44980201 -107557058 + MIR SINE MIR 59 232 -30 7 928 358 332 66 40 chr5 44981430 44981628 -107555631 - MER63A DNA AcHobo -2 208 6 7 928 633 61 0 0 chr5 44981900 44981982 -107555277 + (TA)n Simple_repeat Simple_repeat 1 82 0 7 928 1078 248 50 112 chr5 44982015 44982415 -107554844 - MTEb LTR MaLR 0 379 5 7 928 1020 228 113 74 chr5 44982798 44983134 -107554125 + ORR1E LTR MaLR 6 354 -5 7 928 1070 130 6 0 chr5 44983670 44983847 -107553412 + (GA)n Simple_repeat Simple_repeat 2 179 0 7 928 267 103 0 0 chr5 44983847 44983886 -107553373 + (GGGA)n Simple_repeat Simple_repeat 2 40 0 7 928 607 335 54 36 chr5 44984390 44984724 -107552535 + MLT1C LTR MaLR 112 451 -16 7 928 645 69 0 0 chr5 44985435 44985522 -107551737 + (TTTC)n Simple_repeat Simple_repeat 4 90 0 7 928 279 0 0 0 chr5 44985522 44985552 -107551707 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 7 928 272 269 30 0 chr5 44986433 44986500 -107550759 + MER117 DNA MER1_type 72 140 -57 7 928 293 267 44 11 chr5 44987450 44987541 -107549718 + B1F SINE Alu 49 142 -7 7 928 222 235 43 29 chr5 44987556 44987626 -107549633 + GA-rich Low_complexity Low_complexity 5 75 0 7 928 501 32 0 0 chr5 44988102 44988165 -107549094 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 928 383 193 11 0 chr5 44988387 44988475 -107548784 + (CCA)n Simple_repeat Simple_repeat 1 89 0 7 928 509 253 6 76 chr5 44988476 44988647 -107548612 + HAL1-2a_MD LINE L1 2347 2505 -519 7 928 243 152 0 0 chr5 44988657 44988703 -107548556 + (CACCAT)n Simple_repeat Simple_repeat 1 46 0 7 928 1876 212 50 27 chr5 44988776 44989178 -107548081 + Lx5 LINE L1 6640 7050 0 7 928 24 0 0 0 chr5 44989227 44989251 -107548008 + AT_rich Low_complexity Low_complexity 1 24 0 7 928 180 0 0 0 chr5 44989774 44989794 -107547465 + (T)n Simple_repeat Simple_repeat 1 20 0 7 928 244 284 77 87 chr5 44989917 44990021 -107547238 - MIRm SINE MIR -162 114 12 7 928 461 342 55 0 chr5 44990173 44990354 -107546905 + MER58A DNA MER1_type 33 223 -1 7 928 386 330 42 44 chr5 44991218 44991460 -107545799 + MIR SINE MIR 19 262 0 7 928 232 191 21 0 chr5 44993393 44993440 -107543819 + CT-rich Low_complexity Low_complexity 1 48 0 7 928 309 304 135 43 chr5 44993440 44993581 -107543678 - HAL1-3A_ME LINE L1 -419 2439 2286 7 928 369 0 0 0 chr5 44993652 44993693 -107543566 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 928 216 0 0 0 chr5 44994096 44994120 -107543139 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 928 248 338 55 41 chr5 44994174 44994319 -107542940 + MER20 DNA MER1_type 65 211 -8 7 928 225 227 61 0 chr5 44994513 44994579 -107542680 - MIRc SINE MIR 0 268 199 7 928 1220 268 65 17 chr5 44994991 44995344 -107541915 - ORR1D2 LTR MaLR 0 370 1 7 928 530 323 130 76 chr5 44995519 44995874 -107541385 + MTEb LTR MaLR 5 378 -1 7 928 438 75 0 0 chr5 44995964 44996031 -107541228 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 928 398 340 0 0 chr5 44996190 44996293 -107540966 + B3A SINE B2 9 111 -87 7 928 25 0 0 0 chr5 44996777 44996802 -107540457 + AT_rich Low_complexity Low_complexity 1 25 0 7 928 194 220 17 0 chr5 44997464 44997523 -107539736 + GA-rich Low_complexity Low_complexity 1 60 0 7 928 1288 124 5 11 chr5 44998112 44998300 -107538959 + B2_Mm2 SINE B2 1 187 -8 7 928 1531 218 161 21 chr5 44998534 44998907 -107538352 + RLTR20A1 LTR ERVK 1 443 -108 7 928 405 0 0 0 chr5 44998907 44998952 -107538307 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 928 1531 218 161 21 chr5 44998952 44999061 -107538198 + RLTR20A1 LTR ERVK 444 551 0 7 928 226 261 77 0 chr5 44999090 44999155 -107538104 + MIRb SINE MIR 65 134 -134 7 928 704 339 98 53 chr5 45000093 45000582 -107536677 + MLT1E3 LTR MaLR 95 605 -19 1 928 405 58 0 0 chr5 45002120 45002172 -107535087 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 928 269 228 100 54 chr5 45002394 45002412 -107534847 + CYRA11_Mm Unknown Y-chromosome 159 294 -323 3 928 454 171 98 9 chr5 45002412 45002524 -107534735 - URR1B DNA MER1_type -1 224 103 4 928 283 394 20 0 chr5 45003931 45004030 -107533229 - MER58A DNA MER1_type -122 102 2 5 928 308 348 25 12 chr5 45004216 45004376 -107532883 + MIR3 SINE MIR 24 185 -23 6 928 29 0 0 0 chr5 45005592 45005621 -107531638 + AT_rich Low_complexity Low_complexity 1 29 0 7 928 488 296 83 79 chr5 45005748 45006001 -107531258 + MLT1A1 LTR MaLR 23 276 -132 8 928 339 155 0 0 chr5 45006663 45006747 -107530512 + (CA)n Simple_repeat Simple_repeat 2 85 0 9 928 443 299 44 111 chr5 45007153 45007405 -107529854 - MIRb SINE MIR -18 250 16 1 928 1108 280 40 21 chr5 45008235 45008607 -107528652 + MTE2b LTR MaLR 1 379 0 1 928 181 350 31 0 chr5 45008893 45008990 -107528269 + MIRb SINE MIR 129 228 -40 1 928 392 272 44 0 chr5 45009576 45009690 -107527569 + Lx9 LINE L1 6916 7034 -610 1 928 555 297 133 21 chr5 45009682 45010019 -107527240 + Lx9 LINE L1 7231 7605 -39 1 928 207 0 0 0 chr5 45011002 45011025 -107526234 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 928 231 114 0 0 chr5 45013307 45013351 -107523908 + (T)n Simple_repeat Simple_repeat 1 44 0 1 928 563 130 32 0 chr5 45013565 45013688 -107523571 + GA-rich Low_complexity Low_complexity 2 128 0 1 928 252 0 0 0 chr5 45013752 45013780 -107523479 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 928 321 26 0 0 chr5 45013837 45013875 -107523384 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 928 1125 145 41 0 chr5 45013886 45014058 -107523201 + B2_Mm2 SINE B2 3 181 -14 1 928 753 12 0 0 chr5 45014245 45014331 -107522928 + (CCCCAG)n Simple_repeat Simple_repeat 5 90 0 2 928 440 355 85 18 chr5 45014945 45015226 -107522033 - MER58B DNA MER1_type -14 327 28 2 928 689 198 0 0 chr5 45015750 45015871 -107521388 - B3 SINE B2 -95 121 1 2 928 754 270 185 33 chr5 45016183 45016512 -107520747 + MTEa LTR MaLR 1 379 0 2 928 189 171 0 0 chr5 45016568 45016603 -107520656 + A-rich Low_complexity Low_complexity 1 35 0 2 928 271 227 123 74 chr5 45016790 45016952 -107520307 - L1M5 LINE L1 -346 5778 5609 2 928 316 235 113 8 chr5 45017030 45017209 -107520050 - L1M5 LINE L1 -755 5485 5290 2 928 450 321 6 23 chr5 45019163 45019335 -107517924 - MIR SINE MIR -56 206 38 2 928 516 229 355 0 chr5 45019474 45019640 -107517619 - URR1B DNA MER1_type 0 225 1 2 928 1588 273 9 6 chr5 45020053 45020403 -107516856 - ORR1D2 LTR MaLR -18 352 2 2 928 226 271 17 0 chr5 45020672 45020731 -107516528 + (CTG)n Simple_repeat Simple_repeat 2 61 0 2 928 241 286 81 23 chr5 45022116 45022202 -107515057 - L2c LINE L2 -291 3096 3006 3 928 225 310 42 42 chr5 45022271 45022389 -107514870 + MIRc SINE MIR 18 135 -133 3 928 396 0 0 0 chr5 45023209 45023253 -107514006 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 928 455 218 47 31 chr5 45023258 45023386 -107513873 + Lx9 LINE L1 7502 7631 -13 3 928 304 340 0 0 chr5 45024338 45024438 -107512821 + MLT1A0 LTR MaLR 262 361 -4 3 928 22 0 0 0 chr5 45024708 45024730 -107512529 + AT_rich Low_complexity Low_complexity 1 22 0 3 928 219 364 22 43 chr5 45025253 45025345 -107511914 + RSINE1 SINE B4 76 165 0 3 928 270 0 0 0 chr5 45025620 45025650 -107511609 + (A)n Simple_repeat Simple_repeat 1 30 0 3 928 274 324 46 0 chr5 45027488 45027596 -107509663 + Charlie19a DNA Charlie 249 361 -25 3 928 286 384 26 46 chr5 45027660 45027813 -107509446 - L2b LINE L2 0 3375 3226 3 928 322 208 28 0 chr5 45028313 45028385 -107508874 + ORR1D1 LTR MaLR 1 74 -300 4 928 256 346 0 0 chr5 45029026 45029107 -107508152 - ID4 SINE ID -1 82 2 4 928 518 140 10 0 chr5 45029160 45029260 -107507999 + (TA)n Simple_repeat Simple_repeat 2 102 0 4 928 613 219 9 0 chr5 45029268 45029382 -107507877 - RSINE1 SINE B4 -37 128 14 4 928 228 359 97 26 chr5 45030443 45030669 -107506590 + L3 LINE CR1 4239 4480 -9 4 928 714 217 43 0 chr5 45030941 45031079 -107506180 - B1_Mur1 SINE Alu -4 145 2 4 928 21 0 0 0 chr5 45031240 45031261 -107505998 + AT_rich Low_complexity Low_complexity 1 21 0 4 928 417 276 49 35 chr5 45031520 45031706 -107505553 - B3A SINE B2 0 216 34 4 928 467 320 0 52 chr5 45031751 45031906 -107505353 + B3A SINE B2 42 188 -10 4 928 225 374 103 9 chr5 45032015 45032131 -107505128 + MER44B DNA MER2_type 10 136 -414 4 928 1538 284 58 17 chr5 45032416 45032946 -107504313 + MER89 LTR ERV1 3 554 -5 5 928 229 323 52 10 chr5 45033270 45033367 -107503892 + MIRb SINE MIR 88 188 -80 5 928 394 310 92 69 chr5 45033454 45033714 -107503545 - B4 SINE B4 0 292 27 5 928 2654 72 0 15 chr5 45033720 45034059 -107503200 - L1Md_F2 LINE L1 -2 6580 6247 5 928 2627 55 15 0 chr5 45034059 45034384 -107502875 + L1Md_F2 LINE L1 5893 6222 -360 5 928 449 284 92 0 chr5 45036712 45036821 -107500438 - ID_B1 SINE B4 -13 211 93 5 928 265 157 0 54 chr5 45037729 45037803 -107499456 + GA-rich Low_complexity Low_complexity 4 73 0 5 928 372 305 8 0 chr5 45039353 45039471 -107497788 + (GAATG)n Simple_repeat Simple_repeat 3 121 0 5 928 203 234 13 0 chr5 45039499 45039576 -107497683 + (GAGTG)n Simple_repeat Simple_repeat 5 82 0 5 928 565 302 7 0 chr5 45041404 45041543 -107495716 + B1_Mur3 SINE Alu 3 142 -7 5 928 615 284 11 50 chr5 45041740 45041927 -107495332 - B3A SINE B2 -7 188 16 5 928 829 298 56 15 chr5 45042912 45043181 -107494078 + B4A SINE B4 9 288 -4 6 928 378 57 0 0 chr5 45043258 45043311 -107493948 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 928 978 9 0 0 chr5 45043789 45043900 -107493359 + (TC)n Simple_repeat Simple_repeat 1 111 0 6 928 1055 272 65 22 chr5 45043965 45044243 -107493016 - B4 SINE B4 0 292 3 6 928 235 169 46 0 chr5 45045077 45045142 -107492117 + G-rich Low_complexity Low_complexity 2 69 0 6 928 622 244 0 0 chr5 45046657 45046776 -107490483 + RSINE1 SINE B4 6 124 -41 6 928 405 0 0 0 chr5 45046777 45046822 -107490437 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 928 863 247 50 6 chr5 45048006 45048185 -107489074 + B3 SINE B2 2 188 -28 6 928 468 0 0 0 chr5 45048185 45048237 -107489022 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 928 250 366 78 18 chr5 45048509 45048676 -107488583 + MLT1E LTR MaLR 17 193 -461 6 928 309 266 102 86 chr5 45048687 45048881 -107488378 + MLT1E LTR MaLR 282 478 -175 6 928 898 256 91 56 chr5 45048907 45049247 -107488012 + Lx8 LINE L1 7040 7391 -82 7 928 321 191 0 29 chr5 45049841 45049911 -107487348 + Lx8 LINE L1 7404 7471 -2 7 928 352 330 163 13 chr5 45049925 45050152 -107487107 + MLT1E LTR MaLR 419 679 -1 6 928 224 309 0 90 chr5 45052972 45053061 -107484198 + ID4 SINE ID 3 83 0 7 928 225 139 0 0 chr5 45053061 45053104 -107484155 + (GA)n Simple_repeat Simple_repeat 1 43 0 7 928 195 250 51 26 chr5 45053556 45053634 -107483625 - MIRc SINE MIR -1 267 188 7 928 390 115 0 0 chr5 45054002 45054063 -107483196 + (TGAA)n Simple_repeat Simple_repeat 4 64 0 7 928 999 68 0 8 chr5 45054362 45054495 -107482764 - L1_Mus2 LINE L1 0 6566 6435 7 928 258 32 0 0 chr5 45057388 45057419 -107479840 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 928 645 14 0 0 chr5 45057419 45057492 -107479767 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 928 365 343 120 6 chr5 45057622 45057789 -107479470 + ID_B1 SINE B4 39 224 0 7 928 212 227 0 0 chr5 45060775 45060819 -107476440 + G-rich Low_complexity Low_complexity 1 44 0 7 928 267 31 0 0 chr5 45060828 45060860 -107476399 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8 928 493 278 24 8 chr5 45063808 45063935 -107473324 + RSINE1 SINE B4 9 137 -28 8 928 548 62 0 12 chr5 45063956 45064038 -107473221 + (CA)n Simple_repeat Simple_repeat 1 81 0 8 928 32 43 0 0 chr5 45064038 45064084 -107473175 + AT_rich Low_complexity Low_complexity 1 46 0 8 928 249 222 0 0 chr5 45064172 45064226 -107473033 + A-rich Low_complexity Low_complexity 1 54 0 8 928 249 93 18 36 chr5 45065512 45065568 -107471691 + (TCTCCC)n Simple_repeat Simple_repeat 2 56 0 8 928 42 20 0 0 chr5 45066084 45066133 -107471126 + AT_rich Low_complexity Low_complexity 1 49 0 8 928 227 31 0 30 chr5 45066141 45066174 -107471085 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 8 928 268 293 0 12 chr5 45066360 45066443 -107470816 - ID4 SINE ID 0 83 2 8 928 488 265 83 8 chr5 45068174 45068307 -107468952 - B1F SINE Alu 0 149 7 8 928 233 315 27 0 chr5 45068503 45068576 -107468683 - MIRc SINE MIR -112 156 82 9 928 392 0 21 0 chr5 45069399 45069447 -107467812 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 928 3101 225 30 47 chr5 45069743 45070490 -107466769 + Lx9 LINE L1 6382 7115 -529 9 928 613 285 46 10 chr5 45070483 45070678 -107466581 + Lx9 LINE L1 7253 7454 -190 9 928 537 58 0 0 chr5 45070681 45070750 -107466509 + (TG)n Simple_repeat Simple_repeat 2 70 0 9 928 242 262 48 16 chr5 45070750 45070874 -107466385 + Lx9 LINE L1 7517 7644 0 9 928 28 0 0 0 chr5 45072226 45072254 -107465005 + AT_rich Low_complexity Low_complexity 1 28 0 9 928 510 278 7 7 chr5 45072595 45072740 -107464519 + L1M5 LINE L1 5588 5732 -392 9 928 764 306 86 17 chr5 45073004 45073306 -107463953 + Lx8 LINE L1 6382 6704 -769 9 928 185 65 0 31 chr5 45073787 45073819 -107463440 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 9 928 207 88 0 0 chr5 45074041 45074075 -107463184 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 928 531 284 45 30 chr5 45074075 45074368 -107462891 + MTEa LTR MaLR 68 379 0 9 928 1236 56 0 0 chr5 45074568 45074818 -107462441 + (TC)n Simple_repeat Simple_repeat 1 250 0 1 928 414 0 0 0 chr5 45074818 45074863 -107462396 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 928 202 200 0 0 chr5 45074877 45074912 -107462347 + GA-rich Low_complexity Low_complexity 2 36 0 1 928 201 341 46 23 chr5 45075244 45075331 -107461928 - MIRm SINE MIR -150 126 38 1 928 890 197 119 5 chr5 45075927 45076121 -107461138 + B3 SINE B2 1 216 0 1 928 443 269 0 9 chr5 45076134 45076243 -107461016 + B4 SINE B4 119 226 -66 1 928 192 243 0 0 chr5 45076330 45076404 -107460855 + (CATA)n Simple_repeat Simple_repeat 1 74 0 1 928 219 267 0 0 chr5 45078393 45078438 -107458821 + RSINE1 SINE B4 4 48 -117 1 928 468 271 48 96 chr5 45078548 45078756 -107458503 + B3A SINE B2 1 198 0 1 928 346 289 75 12 chr5 45079169 45079330 -107457929 - MLT1C LTR MaLR -108 359 189 1 928 223 268 0 128 chr5 45079570 45079664 -107457595 + ID4_ SINE ID 1 82 -1 1 928 449 250 29 161 chr5 45079619 45079824 -107457435 + ID_B1 SINE B4 39 216 -8 1 928 441 0 0 0 chr5 45079824 45079873 -107457386 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 928 214 369 0 0 chr5 45080705 45080789 -107456470 - L2a LINE L2 -7 3419 3336 1 928 216 386 30 9 chr5 45081206 45081373 -107455886 + MIRb SINE MIR 56 225 -37 1 928 547 231 161 6 chr5 45081538 45081683 -107455576 + B3 SINE B2 7 166 -50 1 928 225 0 0 0 chr5 45081683 45081708 -107455551 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 928 547 231 161 6 chr5 45081708 45081736 -107455523 + B3 SINE B2 167 206 -10 1 928 556 306 5 10 chr5 45083507 45083702 -107453557 - RMER30 DNA MER1_type -1 201 8 1 928 761 151 7 0 chr5 45086165 45086317 -107450942 + (TG)n Simple_repeat Simple_repeat 1 153 0 1 928 242 241 165 0 chr5 45086690 45086769 -107450490 + ID_B1 SINE B4 105 196 -28 1 928 540 0 0 0 chr5 45086789 45086849 -107450410 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 928 297 0 0 0 chr5 45086849 45086881 -107450378 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 928 247 196 21 11 chr5 45086939 45087032 -107450227 + (TCTG)n Simple_repeat Simple_repeat 2 95 0 1 928 450 0 0 0 chr5 45087033 45087083 -107450176 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 928 217 237 33 17 chr5 45087515 45087575 -107449684 + (TGAA)n Simple_repeat Simple_repeat 2 62 0 1 928 459 35 0 0 chr5 45087849 45087906 -107449353 + (CAG)n Simple_repeat Simple_repeat 1 57 0 1 928 924 260 42 102 chr5 45088264 45088425 -107448834 - MTE2a LTR MaLR 0 379 208 1 928 426 20 0 0 chr5 45088425 45088476 -107448783 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 928 924 260 42 102 chr5 45088476 45088716 -107448543 - MTE2a LTR MaLR -172 207 3 1 929 262 203 0 92 chr5 45088840 45088916 -107448343 - MIRc SINE MIR -101 167 99 1 929 735 312 113 41 chr5 45089182 45089670 -107447589 + MT2A LTR ERVL 4 526 -7 1 929 216 0 0 0 chr5 45090235 45090259 -107447000 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 1 929 1049 274 50 7 chr5 45090983 45091262 -107445997 - B4 SINE B4 0 292 2 1 929 183 263 17 17 chr5 45091949 45092007 -107445252 + MIRb SINE MIR 24 81 -187 1 929 369 62 0 0 chr5 45092066 45092114 -107445145 + (T)n Simple_repeat Simple_repeat 1 48 0 1 929 789 11 0 0 chr5 45092772 45092862 -107444397 + (CATATA)n Simple_repeat Simple_repeat 4 93 0 1 929 242 308 132 93 chr5 45092863 45093174 -107444085 + L1MC3 LINE L1 7463 7785 0 1 929 660 328 82 7 chr5 45093598 45093868 -107443391 - B4A SINE B4 0 292 3 1 929 410 53 18 0 chr5 45094463 45094520 -107442739 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 929 1110 118 0 0 chr5 45094521 45094691 -107442568 + (GGAA)n Simple_repeat Simple_repeat 4 173 0 1 929 285 348 100 17 chr5 45095285 45095405 -107441854 + B3A SINE B2 47 176 -22 1 929 807 196 0 0 chr5 45095434 45095607 -107441652 + CT-rich Low_complexity Low_complexity 3 175 0 1 929 445 246 78 21 chr5 45095611 45095752 -107441507 + Lx7 LINE L1 7219 7367 -329 1 929 285 211 22 0 chr5 45095752 45095842 -107441417 + T-rich Low_complexity Low_complexity 4 95 0 1 929 21 57 0 0 chr5 45095948 45095983 -107441276 + AT_rich Low_complexity Low_complexity 1 35 0 1 929 281 306 27 20 chr5 45096008 45096158 -107441101 - MER53 DNA hAT -22 171 21 1 929 605 281 51 0 chr5 45096421 45096599 -107440660 + B3 SINE B2 30 216 0 1 929 215 266 125 0 chr5 45096933 45096997 -107440262 + ID4_ SINE ID 2 73 -10 1 929 327 25 0 0 chr5 45097004 45097044 -107440215 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 929 193 302 58 97 chr5 45097319 45097473 -107439786 + L2b LINE L2 3227 3374 -1 1 929 269 204 19 0 chr5 45099638 45099692 -107437567 + Lx8 LINE L1 7185 7239 -234 1 929 347 370 40 68 chr5 45099985 45100281 -107436978 + B4 SINE B4 4 291 -1 1 929 414 53 0 0 chr5 45100844 45100901 -107436358 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 929 324 0 0 0 chr5 45100901 45100936 -107436323 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 929 249 33 0 0 chr5 45101185 45101215 -107436044 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 929 394 236 65 113 chr5 45101806 45101992 -107435267 - MLT1B LTR MaLR -25 365 173 1 929 216 0 0 0 chr5 45102276 45102300 -107434959 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 929 467 316 113 21 chr5 45103353 45103644 -107433615 + MER2 DNA MER2_type 3 320 -25 1 929 265 338 32 27 chr5 45103789 45104008 -107433251 + MIR SINE MIR 3 222 -40 1 929 387 0 0 0 chr5 45104060 45104103 -107433156 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 929 1004 139 12 0 chr5 45105053 45105226 -107432033 + URR1B DNA MER1_type 51 225 0 1 929 567 0 0 0 chr5 45106679 45106742 -107430517 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 929 226 328 0 0 chr5 45107736 45107820 -107429439 + ID4 SINE ID 16 99 -53 1 929 737 306 35 39 chr5 45109408 45109694 -107427565 - B4A SINE B4 -3 289 5 1 929 409 127 0 25 chr5 45110041 45110122 -107427137 + GA-rich Low_complexity Low_complexity 3 81 0 1 929 417 226 43 0 chr5 45110588 45110681 -107426578 + RSINE1 SINE B4 25 121 -44 1 929 288 0 0 0 chr5 45110704 45110736 -107426523 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 929 418 296 82 77 chr5 45112855 45112987 -107424272 + B3A SINE B2 1 131 -67 1 929 306 0 0 0 chr5 45112987 45113021 -107424238 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 929 268 296 82 77 chr5 45113021 45113071 -107424188 + B2_Mm2 SINE B2 127 183 -12 1 929 249 200 128 39 chr5 45113983 45114061 -107423198 - MIR SINE MIR -108 154 70 1 929 311 284 27 89 chr5 45114655 45114767 -107422492 - RSINE1 SINE B4 0 165 61 1 929 1159 171 83 0 chr5 45114791 45114996 -107422263 - URR1A DNA MER1_type 0 226 5 1 929 538 270 10 51 chr5 45114999 45115209 -107422050 + B3 SINE B2 2 197 -1 1 929 333 0 0 0 chr5 45116599 45116636 -107420623 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 929 294 29 0 0 chr5 45116661 45116696 -107420563 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 929 549 0 0 0 chr5 45116732 45116793 -107420466 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 1 929 721 265 68 52 chr5 45116857 45117048 -107420211 - ID_B1 SINE B4 -30 194 1 1 929 307 287 54 36 chr5 45117342 45117454 -107419805 + ID_B1 SINE B4 109 222 -2 1 929 314 77 58 0 chr5 45117550 45117602 -107419657 + (TCTCCC)n Simple_repeat Simple_repeat 2 56 0 1 929 407 19 0 19 chr5 45117602 45117655 -107419604 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 929 403 156 47 0 chr5 45117661 45117725 -107419534 - ID4 SINE ID -15 68 2 1 929 385 307 185 16 chr5 45117779 45118093 -107419166 - L2a LINE L2 -50 3376 3010 1 929 617 284 56 17 chr5 45118531 45118710 -107418549 - B4A SINE B4 -105 187 2 1 929 185 231 0 0 chr5 45119333 45119372 -107417887 + MIRm SINE MIR 100 138 -138 1 929 237 176 114 29 chr5 45120446 45120528 -107416731 - MIRc SINE MIR -46 162 76 1 929 792 83 0 0 chr5 45120708 45120817 -107416442 + (GAAA)n Simple_repeat Simple_repeat 1 109 0 1 929 333 0 0 0 chr5 45121538 45121575 -107415684 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 929 302 315 74 0 chr5 45121697 45121805 -107415454 + MTEa LTR MaLR 1 116 -263 1 929 255 293 0 0 chr5 45121830 45121888 -107415371 + MTEa LTR MaLR 313 370 -9 1 929 4576 124 7 22 chr5 45122333 45122592 -107414667 + L1_Mus3 LINE L1 5221 5454 -429 1 929 6349 19 0 0 chr5 45122592 45123271 -107413988 + L1Md_A LINE L1 5904 6582 0 1 929 8159 70 8 6 chr5 45123271 45124451 -107412808 + L1_Mus3 LINE L1 5455 6636 -2 1 929 363 249 134 63 chr5 45125203 45125410 -107411849 + B2_Mm2 SINE B2 2 216 0 1 929 22 0 0 0 chr5 45125924 45125946 -107411313 + AT_rich Low_complexity Low_complexity 1 22 0 1 929 213 186 0 41 chr5 45126032 45126105 -107411154 + G-rich Low_complexity Low_complexity 4 73 0 1 929 241 47 47 0 chr5 45126687 45126730 -107410529 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 1 929 688 334 14 14 chr5 45126742 45127036 -107410223 + Lx7 LINE L1 6961 7254 -442 1 929 483 63 0 0 chr5 45127386 45127449 -107409810 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1 929 704 165 42 28 chr5 45128044 45128187 -107409072 - B1_Mur4 SINE Alu 0 150 6 1 929 344 257 26 17 chr5 45129153 45129268 -107407991 + MIRb SINE MIR 89 204 -64 1 929 718 360 7 46 chr5 45130131 45130434 -107406825 + B4A SINE B4 2 292 0 1 929 1773 168 192 0 chr5 45130762 45131084 -107406175 - ORR1C2 LTR MaLR 0 384 1 1 929 247 0 79 0 chr5 45131154 45131192 -107406067 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 929 340 297 169 15 chr5 45131257 45131307 -107405952 + MLT1J LTR MaLR 41 104 -408 2 929 228 86 0 0 chr5 45131307 45131342 -107405917 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 2 929 340 297 169 15 chr5 45131342 45131421 -107405838 + MLT1J LTR MaLR 105 189 -323 2 929 594 41 0 0 chr5 45132345 45132418 -107404841 + (CAGTT)n Simple_repeat Simple_repeat 3 75 0 2 929 201 74 0 0 chr5 45132465 45132492 -107404767 + (A)n Simple_repeat Simple_repeat 1 27 0 2 929 390 315 0 0 chr5 45132495 45132584 -107404675 + B4A SINE B4 82 170 -122 2 929 344 57 57 0 chr5 45132605 45132658 -107404601 + (GAAAA)n Simple_repeat Simple_repeat 1 56 0 2 929 297 222 0 0 chr5 45132736 45132835 -107404424 + (CA)n Simple_repeat Simple_repeat 2 100 0 2 929 318 164 119 0 chr5 45132841 45132908 -107404351 + HAL1-3A_ME LINE L1 1975 2049 -809 2 929 541 304 135 15 chr5 45132952 45133219 -107404040 + MTEa LTR MaLR 74 372 -7 2 929 1040 136 25 0 chr5 45133382 45133544 -107403715 + B2_Mm2 SINE B2 4 169 -26 2 929 292 343 90 14 chr5 45134379 45134524 -107402735 + RSINE1 SINE B4 1 156 -9 2 929 205 299 63 28 chr5 45134914 45135038 -107402221 - MIR SINE MIR -103 159 33 2 929 317 310 14 100 chr5 45135670 45135810 -107401449 - MTE2b LTR MaLR -13 366 239 2 929 1182 201 197 67 chr5 45135950 45135978 -107401281 + ORR1D1 LTR MaLR 1 28 -346 2 929 726 128 0 0 chr5 45135978 45136095 -107401164 + (TA)n Simple_repeat Simple_repeat 1 117 0 2 929 423 0 0 0 chr5 45136095 45136141 -107401118 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 929 1182 201 197 67 chr5 45136141 45136243 -107401016 + ORR1D1 LTR MaLR 29 168 -206 2 929 666 0 0 0 chr5 45136243 45136317 -107400942 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 929 1182 201 197 67 chr5 45136317 45136514 -107400745 + ORR1D1 LTR MaLR 169 371 -3 2 929 220 370 60 0 chr5 45137192 45137292 -107399967 + MIRb SINE MIR 13 118 -150 2 929 468 358 25 0 chr5 45137528 45137690 -107399569 + MLT1H2 LTR MaLR 1 166 -323 2 929 200 204 23 0 chr5 45139207 45139251 -107398008 - MIRc SINE MIR -132 136 92 2 929 414 0 0 0 chr5 45139539 45139585 -107397674 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 929 526 199 72 56 chr5 45139866 45139877 -107397382 + B1F SINE Alu 1 44 -105 2 929 645 211 9 0 chr5 45139877 45139991 -107397268 + ID_B1 SINE B4 93 207 -17 2 929 306 274 112 35 chr5 45139888 45140058 -107397201 - YREP_Mm Unknown Unknown -1518 294 112 2 929 526 199 72 56 chr5 45139991 45140013 -107397246 + B1F SINE Alu 45 148 -1 2 929 276 342 50 48 chr5 45140216 45140340 -107396919 + MIRb SINE MIR 3 130 -138 2 929 185 227 0 22 chr5 45141312 45141357 -107395902 + MIRc SINE MIR 208 251 -17 2 929 197 43 85 0 chr5 45142172 45142219 -107395040 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2 929 265 252 35 14 chr5 45142235 45142376 -107394883 + (TCTA)n Simple_repeat Simple_repeat 2 145 0 2 929 594 288 25 0 chr5 45142474 45142634 -107394625 - MTEb LTR MaLR -12 367 204 2 929 352 242 0 0 chr5 45142657 45142723 -107394536 - MTEb LTR MaLR -293 66 1 2 929 662 221 13 82 chr5 45142822 45142980 -107394279 - B1_Mur3 SINE Alu -2 147 1 2 929 399 89 0 0 chr5 45143149 45143205 -107394054 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 929 1389 36 0 0 chr5 45143464 45143632 -107393627 + B2_Mm1a SINE B2 2 169 -24 2 929 387 0 0 0 chr5 45143798 45143841 -107393418 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 929 328 319 101 49 chr5 45145190 45145437 -107391822 - MIRb SINE MIR -4 264 5 2 929 195 100 0 0 chr5 45146233 45146263 -107390996 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 929 1521 73 0 25 chr5 45146545 45146742 -107390517 - B2_Mm2 SINE B2 -2 193 2 2 929 542 308 64 16 chr5 45147793 45147944 -107389315 + B3A SINE B2 2 162 -36 2 929 396 0 0 0 chr5 45147944 45147988 -107389271 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 929 542 308 64 16 chr5 45147988 45148024 -107389235 + B3A SINE B2 163 198 0 2 929 582 15 0 0 chr5 45148587 45148654 -107388605 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 2 929 1146 295 39 58 chr5 45149033 45149393 -107387866 + ORR1D2 LTR MaLR 1 353 -17 2 929 1235 65 12 0 chr5 45150126 45150295 -107386964 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 2 929 694 252 30 77 chr5 45151462 45151819 -107385440 + L1M3 LINE L1 5181 5536 -653 2 929 1191 181 9 9 chr5 45151839 45152057 -107385202 + URR1B DNA MER1_type 1 218 -7 2 929 999 259 117 72 chr5 45152094 45152539 -107384720 + Charlie1a DNA MER1_type 706 1170 -285 2 929 259 338 0 26 chr5 45152849 45152925 -107384334 - ID4_ SINE ID -7 76 3 2 929 273 308 0 0 chr5 45153027 45153092 -107384167 + MER44B DNA MER2_type 15 79 -471 2 929 261 0 0 0 chr5 45153092 45153121 -107384138 + (TGG)n Simple_repeat Simple_repeat 1 29 0 2 929 846 227 43 53 chr5 45153131 45153340 -107383919 - ID_B1 SINE B4 -10 214 8 2 929 976 257 81 29 chr5 45153350 45153659 -107383600 + MER44B DNA MER2_type 107 431 -119 2 929 353 337 103 29 chr5 45153702 45153876 -107383383 - MER58B DNA MER1_type -23 318 132 2 929 307 201 25 51 chr5 45153863 45153959 -107383300 - RMER17A LTR ERVK -281 470 376 2 929 1195 89 6 6 chr5 45153959 45154139 -107383120 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 929 307 201 25 51 chr5 45154139 45154199 -107383060 - RMER17A LTR ERVK -376 375 319 2 929 270 306 54 22 chr5 45154613 45154752 -107382507 - MIR SINE MIR -41 221 78 2 929 225 167 0 0 chr5 45154920 45154962 -107382297 + CT-rich Low_complexity Low_complexity 1 42 0 2 929 213 342 104 31 chr5 45155307 45155500 -107381759 + L2a LINE L2 2968 3174 -252 2 929 920 150 0 22 chr5 45155509 45155693 -107381566 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 929 193 262 43 86 chr5 45155923 45156040 -107381219 - MIRb SINE MIR -44 224 113 2 929 222 158 26 0 chr5 45156892 45156930 -107380329 - MIRm SINE MIR -112 164 126 2 929 225 139 28 0 chr5 45156899 45156935 -107380324 - MIRc SINE MIR -115 153 117 2 929 187 300 74 12 chr5 45158178 45158259 -107379000 + MIRc SINE MIR 59 144 -124 2 929 357 364 61 0 chr5 45158874 45159006 -107378253 - MER20 DNA MER1_type -16 203 64 2 929 562 355 37 45 chr5 45162088 45162333 -107374926 + B4A SINE B4 2 244 -48 2 929 1219 122 0 0 chr5 45162342 45162514 -107374745 + Lx LINE L1 6358 6529 -125 2 929 297 0 0 0 chr5 45162551 45162584 -107374675 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 929 349 350 74 106 chr5 45162628 45162967 -107374292 + MLT1G1 LTR MaLR 179 506 -73 2 929 270 56 0 0 chr5 45164020 45164056 -107373203 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 929 787 249 25 54 chr5 45164066 45164270 -107372989 - B3 SINE B2 -14 202 5 2 929 240 274 0 0 chr5 45164560 45164622 -107372637 + (ATG)n Simple_repeat Simple_repeat 3 64 0 2 929 21 0 0 0 chr5 45164933 45164954 -107372305 + AT_rich Low_complexity Low_complexity 1 21 0 2 929 23 0 0 0 chr5 45166292 45166315 -107370944 + AT_rich Low_complexity Low_complexity 1 23 0 2 929 472 267 104 55 chr5 45166416 45166618 -107370641 + MER63C DNA AcHobo 134 345 -585 2 929 361 360 8 0 chr5 45166618 45166743 -107370516 + Tigger5 DNA MER2_type 2 127 -2279 2 929 312 330 9 19 chr5 45166833 45166941 -107370318 + Tigger5 DNA MER2_type 2300 2406 0 2 929 1079 297 25 49 chr5 45166965 45167453 -107369806 + MER63C DNA AcHobo 395 870 -60 2 929 23 54 0 0 chr5 45167613 45167650 -107369609 + AT_rich Low_complexity Low_complexity 1 37 0 2 929 288 359 51 0 chr5 45168210 45168366 -107368893 + Kanga1b DNA Tc2 125 288 -491 2 929 367 308 152 0 chr5 45168464 45168701 -107368558 + Kanga1b DNA Tc2 403 675 -104 2 929 495 48 0 0 chr5 45169986 45170048 -107367211 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 929 717 274 0 7 chr5 45170964 45171111 -107366148 - RSINE1 SINE B4 -17 148 3 2 929 305 316 62 45 chr5 45172467 45172747 -107364512 - B4A SINE B4 -2 290 2 2 929 3621 35 2 0 chr5 45173041 45173436 -107363823 - MTA_Mm LTR MaLR 0 396 1 2 929 185 135 68 0 chr5 45173587 45173661 -107363598 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 2 929 691 134 150 45 chr5 45174059 45174192 -107363067 + B1_Mus1 SINE Alu 1 147 -1 2 929 187 306 0 0 chr5 45174863 45174912 -107362347 + L2c LINE L2 3259 3307 -80 2 929 837 56 0 0 chr5 45175109 45175216 -107362043 + (GAA)n Simple_repeat Simple_repeat 2 108 0 2 929 184 250 85 51 chr5 45176370 45176429 -107360830 - MIRm SINE MIR -97 179 119 2 929 321 100 0 0 chr5 45177284 45177334 -107359925 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 929 214 372 0 44 chr5 45177402 45177492 -107359767 + L2b LINE L2 3030 3115 -260 2 929 402 21 0 0 chr5 45178552 45178599 -107358660 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 929 246 116 0 0 chr5 45178613 45178656 -107358603 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 929 477 289 63 38 chr5 45178770 45178928 -107358331 + RSINE1 SINE B4 4 165 0 2 929 540 0 0 0 chr5 45179849 45179909 -107357350 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 929 841 211 194 0 chr5 45180013 45180193 -107357066 + B3 SINE B2 1 215 -1 2 929 191 114 0 28 chr5 45181118 45181154 -107356105 + (TTA)n Simple_repeat Simple_repeat 3 37 0 2 929 265 337 19 19 chr5 45181416 45181519 -107355740 + GA-rich Low_complexity Low_complexity 6 108 0 2 929 241 274 83 89 chr5 45181938 45182118 -107355141 + RMER1C Other Other 1160 1338 -4 2 929 390 21 0 0 chr5 45182138 45182185 -107355074 + (CAG)n Simple_repeat Simple_repeat 1 47 0 2 929 182 327 0 35 chr5 45182252 45182309 -107354950 - L2b LINE L2 -203 3172 3118 2 929 255 79 0 0 chr5 45182358 45182396 -107354863 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 929 575 260 7 58 chr5 45183466 45183621 -107353638 + B1F SINE Alu 1 147 -2 2 929 710 178 7 52 chr5 45183898 45184034 -107353225 + B1_Mur3 SINE Alu 8 137 -12 2 929 591 15 0 0 chr5 45184034 45184102 -107353157 + (CAAAA)n Simple_repeat Simple_repeat 4 71 0 2 929 1260 68 0 0 chr5 45184665 45184812 -107352447 - B1_Mus2 SINE Alu 0 147 1 2 929 252 86 0 0 chr5 45185412 45185447 -107351812 + (TTC)n Simple_repeat Simple_repeat 2 36 0 2 929 243 0 0 0 chr5 45186516 45186543 -107350716 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 929 244 0 56 0 chr5 45186873 45186909 -107350350 + (TGGGGG)n Simple_repeat Simple_repeat 4 41 0 3 929 330 91 0 0 chr5 45187821 45187876 -107349383 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 929 414 0 0 0 chr5 45188847 45188893 -107348366 + (TTA)n Simple_repeat Simple_repeat 2 47 0 3 929 296 111 19 0 chr5 45189152 45189206 -107348053 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 929 222 128 0 0 chr5 45190821 45190860 -107346399 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 929 180 0 0 0 chr5 45190861 45190881 -107346378 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 3 929 260 232 0 40 chr5 45190920 45191019 -107346240 + GA-rich Low_complexity Low_complexity 4 98 0 3 929 582 117 18 9 chr5 45191023 45191135 -107346124 + (GA)n Simple_repeat Simple_repeat 1 113 0 3 929 293 68 23 0 chr5 45193204 45193248 -107344011 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 3 929 342 294 15 92 chr5 45193423 45193554 -107343705 - RSINE1 SINE B4 -31 134 14 3 929 377 288 77 71 chr5 45194009 45194192 -107343067 - MIRb SINE MIR -23 245 62 3 929 335 319 142 18 chr5 45195394 45195563 -107341696 + MIR SINE MIR 39 228 -34 3 929 1141 297 69 44 chr5 45196203 45196636 -107340623 - MT2A LTR ERVL -87 446 3 3 929 950 82 0 22 chr5 45196792 45196804 -107340455 - B1_Mus1 SINE Alu -1 147 136 3 929 437 0 0 19 chr5 45196804 45196858 -107340401 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 3 929 950 82 0 22 chr5 45196858 45196982 -107340277 - B1_Mus1 SINE Alu -13 135 14 3 929 545 336 85 17 chr5 45196959 45197195 -107340064 + MTE2b LTR MaLR 100 351 -28 3 929 292 325 49 74 chr5 45198417 45198580 -107338679 + RSINE1 SINE B4 3 161 -4 3 929 329 314 40 93 chr5 45198627 45198778 -107338481 + RSINE1 SINE B4 23 165 0 3 929 543 345 4 30 chr5 45199098 45199331 -107337928 - MIR SINE MIR -21 241 15 3 929 204 40 0 0 chr5 45199497 45199522 -107337737 + (A)n Simple_repeat Simple_repeat 1 25 0 3 929 279 338 44 15 chr5 45199525 45199660 -107337599 - MLT1K LTR MaLR -44 551 413 3 929 613 221 134 27 chr5 45200384 45200533 -107336726 + RSINE1 SINE B4 1 165 0 3 929 360 0 0 0 chr5 45200765 45200805 -107336454 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 929 1294 89 44 11 chr5 45200901 45201083 -107336176 - B2_Mm2 SINE B2 -6 189 2 3 929 1738 100 0 63 chr5 45201097 45201365 -107335894 - L1Md_F2 LINE L1 0 6582 6332 3 929 1197 30 15 0 chr5 45201399 45201532 -107335727 + B1_Mm SINE Alu 5 139 -8 3 929 243 0 0 0 chr5 45201532 45201559 -107335700 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 929 186 43 0 0 chr5 45201565 45201588 -107335671 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 929 748 192 0 0 chr5 45202656 45202781 -107334478 - B1_Mus1 SINE Alu 0 148 24 3 929 333 220 10 117 chr5 45202691 45202794 -107334465 - MT2B LTR ERVL -337 264 173 3 929 243 302 16 0 chr5 45203216 45203279 -107333980 - B4A SINE B4 -6 286 223 3 929 466 354 42 68 chr5 45203299 45203490 -107333769 - B3A SINE B2 -30 186 1 3 929 843 281 74 4 chr5 45203490 45203704 -107333555 - B4A SINE B4 -60 232 3 3 929 510 270 36 0 chr5 45203704 45203841 -107333418 + MLT2B4 LTR ERVL 1 142 -414 3 929 1419 230 127 23 chr5 45203842 45204269 -107332990 + ERVL-B4-int LTR ERVL 737 1207 -4507 3 929 741 254 42 11 chr5 45204282 45204473 -107332786 + MTD LTR MaLR 5 201 -218 3 929 1533 195 109 56 chr5 45204487 45204846 -107332413 + Lx5 LINE L1 6670 7047 -3 3 929 463 296 106 25 chr5 45204850 45205245 -107332014 + L1MA5 LINE L1 5844 6270 -30 3 929 1737 44 0 0 chr5 45205250 45205453 -107331806 - L1Md_F3 LINE L1 -218 6366 6164 3 929 1674 39 19 5 chr5 45205453 45205660 -107331599 + L1Md_F3 LINE L1 6373 6582 -2 3 929 21 0 0 0 chr5 45205668 45205689 -107331570 + AT_rich Low_complexity Low_complexity 1 21 0 3 929 860 92 0 8 chr5 45205730 45205851 -107331408 + B2_Mm2 SINE B2 2 121 -74 3 929 1108 274 83 8 chr5 45205913 45206003 -107331256 + ERVL-B4-int LTR ERVL 3523 3618 -2096 3 929 189 0 0 0 chr5 45206003 45206024 -107331235 + (GGAA)n Simple_repeat Simple_repeat 1 21 0 3 929 1108 274 83 8 chr5 45206024 45206293 -107330966 + ERVL-B4-int LTR ERVL 3619 3908 -1806 3 929 229 0 0 77 chr5 45206352 45206391 -107330868 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 3 929 2711 268 113 57 chr5 45206410 45206882 -107330377 + ERVL-B4-int LTR ERVL 4030 4548 -1166 3 929 184 102 24 71 chr5 45206882 45206924 -107330335 - L3 LINE CR1 -3190 1299 1260 3 929 2711 268 113 57 chr5 45206924 45207451 -107329808 + ERVL-B4-int LTR ERVL 4549 5129 -585 3 929 232 267 12 128 chr5 45207519 45207547 -107329712 - MTD LTR MaLR -342 77 51 3 929 1156 95 6 17 chr5 45207547 45207719 -107329540 + Lx LINE L1 6484 6653 -1 3 929 232 267 12 128 chr5 45207719 45207776 -107329483 - MTD LTR MaLR -369 50 2 3 929 977 253 80 48 chr5 45207908 45208219 -107329040 + MLT2B4 LTR ERVL 3 323 -233 3 929 235 148 66 0 chr5 45208259 45208287 -107328972 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 3 929 609 110 0 0 chr5 45208287 45208378 -107328881 + (CAGA)n Simple_repeat Simple_repeat 2 92 0 3 929 235 148 66 0 chr5 45208378 45208410 -107328849 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 3 929 1147 330 37 63 chr5 45208447 45208906 -107328353 - MLT2B2 LTR ERVL -68 447 1 3 929 1099 61 6 98 chr5 45209344 45209507 -107327752 + B1_Mus1 SINE Alu 1 148 0 3 929 245 365 0 0 chr5 45209535 45209609 -107327650 + ID4_ SINE ID 5 78 -5 3 929 1184 77 28 0 chr5 45209712 45209855 -107327404 + B1_Mus2 SINE Alu 1 147 0 3 929 214 22 0 151 chr5 45209865 45209918 -107327341 + A-rich Low_complexity Low_complexity 1 45 0 3 929 1023 218 94 18 chr5 45209934 45210198 -107327061 - MTD LTR MaLR -20 399 133 3 929 1093 124 0 0 chr5 45210657 45210802 -107326457 - B1_Mus1 SINE Alu -2 146 2 3 929 541 298 72 13 chr5 45210953 45211106 -107326153 + RSINE1 SINE B4 2 163 -2 3 929 2957 215 106 13 chr5 45211121 45211868 -107325391 - Lx9 LINE L1 -18 7626 6807 3 929 1704 123 36 69 chr5 45211868 45212201 -107325058 + RLTRETN_Mm LTR ERVK 1 322 0 3 929 2957 215 106 13 chr5 45212201 45212216 -107325043 - Lx9 LINE L1 -838 6806 6793 3 929 325 344 152 47 chr5 45212645 45212987 -107324272 - LTR16B2 LTR ERVL -80 382 5 3 929 1728 247 60 41 chr5 45213262 45213976 -107323283 + Lx7 LINE L1 5431 6190 -1506 3 929 267 214 0 0 chr5 45214006 45214076 -107323183 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 929 587 308 89 36 chr5 45214095 45214315 -107322944 + Lx7 LINE L1 7177 7406 -238 3 929 3771 10 2 0 chr5 45214315 45214710 -107322549 - MTA_Mm LTR MaLR 0 396 1 3 929 9760 39 4 0 chr5 45214710 45215804 -107321455 - MTA_Mm-int LTR MaLR 0 1098 1 3 929 3611 28 2 10 chr5 45215804 45216203 -107321056 - MTA_Mm LTR MaLR 0 396 1 3 929 587 308 89 36 chr5 45216203 45216341 -107320918 + Lx7 LINE L1 7407 7554 -90 3 929 1075 135 6 0 chr5 45216440 45216596 -107320663 + B2_Mm1t SINE B2 4 160 -33 3 929 207 0 0 0 chr5 45216596 45216619 -107320640 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 929 180 0 0 0 chr5 45216631 45216651 -107320608 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 929 1186 64 14 0 chr5 45216651 45216792 -107320467 + B1_Mm SINE Alu 5 147 0 3 929 407 272 56 44 chr5 45217187 45217381 -107319878 - MLT1C LTR MaLR -27 533 293 3 929 241 218 35 0 chr5 45217466 45217553 -107319706 + CT-rich Low_complexity Low_complexity 2 91 0 3 929 387 0 0 0 chr5 45217554 45217597 -107319662 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 929 545 285 73 0 chr5 45217598 45217735 -107319524 - B3A SINE B2 -50 148 2 3 929 410 296 63 38 chr5 45217751 45217909 -107319350 - MLT1C LTR MaLR -305 162 1 3 929 23 33 0 0 chr5 45218047 45218077 -107319182 + AT_rich Low_complexity Low_complexity 1 30 0 3 929 356 218 118 10 chr5 45218335 45218437 -107318822 - PB1D10 SINE Alu 0 117 5 3 929 691 256 12 24 chr5 45218361 45218525 -107318734 - ID_B1 SINE B4 -62 162 1 3 929 605 226 7 21 chr5 45218670 45218810 -107318449 + B1_Mus2 SINE Alu 9 146 -1 3 929 255 343 0 0 chr5 45218852 45218919 -107318340 + ID4_ SINE ID 6 72 -11 3 929 454 283 8 40 chr5 45219109 45219234 -107318025 + RSINE1 SINE B4 43 163 -2 3 929 253 287 68 20 chr5 45219266 45219412 -107317847 + L1MC4a LINE L1 7107 7259 -623 3 929 259 196 0 0 chr5 45219493 45219539 -107317720 + L1MC4a LINE L1 7324 7369 -513 3 930 293 215 77 0 chr5 45221978 45222043 -107315216 - MIRm SINE MIR -150 126 57 3 930 344 178 14 0 chr5 45223210 45223283 -107313976 + CT-rich Low_complexity Low_complexity 2 75 0 3 930 476 352 19 0 chr5 45223389 45223533 -107313726 + RSINE1 SINE B4 2 148 -17 3 930 360 0 0 0 chr5 45223533 45223573 -107313686 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 930 476 352 19 0 chr5 45223573 45223587 -107313672 + RSINE1 SINE B4 149 162 -3 3 930 1238 122 21 0 chr5 45224234 45224423 -107312836 - B2_Mm2 SINE B2 -1 194 2 3 930 782 270 5 25 chr5 45224565 45224766 -107312493 + B3A SINE B2 2 198 0 3 930 301 323 101 0 chr5 45224894 45224993 -107312266 - PB1D10 SINE Alu -4 113 5 3 930 352 388 12 0 chr5 45225836 45226001 -107311258 + L1MD LINE L1 3729 3895 -2251 3 930 932 90 0 8 chr5 45226068 45226202 -107311057 + B1_Mus2 SINE Alu 6 138 -9 3 930 408 40 0 0 chr5 45226213 45226263 -107310996 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 930 23 0 0 0 chr5 45226387 45226410 -107310849 + AT_rich Low_complexity Low_complexity 1 23 0 3 930 549 288 163 31 chr5 45226507 45226765 -107310494 + B4A SINE B4 1 292 0 3 930 493 269 54 41 chr5 45226844 45226991 -107310268 + B1_Mur2 SINE Alu 1 149 0 3 930 25 31 0 0 chr5 45227093 45227125 -107310134 + AT_rich Low_complexity Low_complexity 1 32 0 3 930 886 206 166 28 chr5 45227246 45227565 -107309694 - ORR1D2 LTR MaLR -3 367 5 3 930 234 191 0 0 chr5 45227570 45227617 -107309642 + CT-rich Low_complexity Low_complexity 2 48 0 3 930 333 234 31 31 chr5 45227632 45227729 -107309530 - PB1D9 SINE Alu 0 120 24 3 930 443 17 0 33 chr5 45228837 45228898 -107308361 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 3 930 515 230 76 38 chr5 45229147 45229305 -107307954 - RSINE1 SINE B4 0 165 2 3 930 459 0 0 0 chr5 45230154 45230205 -107307054 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 930 472 282 96 62 chr5 45230265 45230537 -107306722 + B4A SINE B4 2 282 -10 3 930 543 294 50 5 chr5 45231362 45231564 -107305695 + ID_B1 SINE B4 2 212 -12 3 930 216 174 30 71 chr5 45231583 45231682 -107305577 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 4 930 256 375 134 29 chr5 45231697 45231936 -107305323 + MER21B LTR ERV1 476 739 -124 4 930 767 252 43 40 chr5 45232268 45232621 -107304638 + L1ME2 LINE L1 5640 6011 -289 4 930 328 275 77 77 chr5 45232706 45232915 -107304344 + B3A SINE B2 2 210 -6 4 930 188 343 93 19 chr5 45233594 45233701 -107303558 - MIRm SINE MIR -123 153 39 4 930 271 389 92 18 chr5 45233759 45234042 -107303217 + LTR16C LTR ERVL 186 489 0 4 930 383 243 125 28 chr5 45234527 45234697 -107302562 - MLT1C LTR MaLR -214 176 3 4 930 585 317 118 24 chr5 45234711 45234957 -107302302 + B4A SINE B4 2 270 -22 4 930 432 0 0 0 chr5 45235017 45235065 -107302194 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 930 567 0 0 0 chr5 45235065 45235127 -107302132 + (GA)n Simple_repeat Simple_repeat 2 64 0 4 930 764 204 103 16 chr5 45236251 45236445 -107300814 - B3 SINE B2 -3 213 3 4 930 387 0 0 0 chr5 45236721 45236764 -107300495 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 930 488 330 17 8 chr5 45236830 45236949 -107300310 - RSINE1 SINE B4 -44 121 2 4 930 30196 114 13 13 chr5 45237005 45243454 -107293805 - L1_Mus1 LINE L1 -6 6632 181 4 930 220 83 20 20 chr5 45244701 45244750 -107292509 + (TTTTTG)n Simple_repeat Simple_repeat 3 51 0 4 930 578 159 7 0 chr5 45247564 45247709 -107289550 + CT-rich Low_complexity Low_complexity 1 146 0 4 930 408 323 23 68 chr5 45247710 45247843 -107289416 - B1F2 SINE Alu -12 137 11 4 930 481 237 26 9 chr5 45247872 45247987 -107289272 - B1F SINE Alu -2 147 31 4 930 190 51 24 49 chr5 45247990 45248031 -107289228 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 4 930 471 173 0 0 chr5 45248245 45248320 -107288939 - B1_Mur1 SINE Alu -26 123 49 4 930 305 326 22 0 chr5 45248388 45248477 -107288782 - Tigger5 DNA MER2_type -1 2405 2315 4 930 210 314 29 0 chr5 45248586 45248656 -107288603 - MIRb SINE MIR -58 210 139 4 930 685 298 25 46 chr5 45248930 45249127 -107288132 + B3A SINE B2 6 198 0 4 930 1124 266 42 30 chr5 45249717 45250054 -107287205 - RMER5 LTR ERV1 0 534 194 4 930 282 255 92 41 chr5 45250280 45250338 -107286921 + MLT1C LTR MaLR 117 182 -285 4 930 414 0 0 0 chr5 45250338 45250384 -107286875 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 930 282 255 92 41 chr5 45250384 45250423 -107286836 + MLT1C LTR MaLR 183 219 -248 4 930 809 244 114 29 chr5 45250609 45250854 -107286405 - MLT1C LTR MaLR -113 354 89 4 930 726 355 70 6 chr5 45252327 45252639 -107284620 - MER2 DNA MER2_type -13 332 1 4 930 277 278 28 0 chr5 45253501 45253573 -107283686 - B1F SINE Alu -1 148 75 4 930 615 304 85 85 chr5 45253615 45253967 -107283292 + MLT1D LTR MaLR 152 503 -2 4 930 353 339 9 0 chr5 45253989 45254098 -107283161 + ID_B1 SINE B4 108 217 -7 4 930 243 88 0 0 chr5 45254134 45254168 -107283091 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 4 930 1227 260 102 5 chr5 45254553 45254994 -107282265 - Lx8 LINE L1 -18 7455 6972 4 930 303 352 0 18 chr5 45255030 45255140 -107282119 + CT-rich Low_complexity Low_complexity 5 112 0 4 930 368 331 100 16 chr5 45255299 45255489 -107281770 - Tigger15a DNA TcMar -364 351 146 4 930 360 64 0 0 chr5 45255518 45255565 -107281694 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 930 600 125 0 0 chr5 45257029 45257125 -107280134 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 4 930 360 294 0 6 chr5 45257252 45257422 -107279837 + (TG)n Simple_repeat Simple_repeat 1 168 0 4 930 1488 151 218 59 chr5 45257788 45258127 -107279132 + ORR1B1 LTR MaLR 1 393 -1 4 930 541 84 0 0 chr5 45258834 45258905 -107278354 + B1_Mus2 SINE Alu 64 134 -13 4 930 215 31 0 30 chr5 45258905 45258938 -107278321 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 930 252 0 0 0 chr5 45259209 45259237 -107278022 + (TC)n Simple_repeat Simple_repeat 2 29 0 4 930 1187 56 0 0 chr5 45259237 45259381 -107277878 - B1_Mm SINE Alu -3 144 1 4 930 399 41 0 0 chr5 45259727 45259776 -107277483 + (TC)n Simple_repeat Simple_repeat 1 49 0 4 930 339 25 0 0 chr5 45259776 45259815 -107277444 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 930 753 308 28 16 chr5 45259820 45260071 -107277188 - MER2 DNA MER2_type -91 254 1 4 930 516 32 0 0 chr5 45260575 45260637 -107276622 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 930 344 348 44 18 chr5 45260645 45260759 -107276500 - RSINE1 SINE B4 -38 127 11 4 930 276 346 112 0 chr5 45260944 45261051 -107276208 + ORR1E LTR MaLR 75 193 -166 4 930 183 184 0 0 chr5 45262663 45262701 -107274558 + CT-rich Low_complexity Low_complexity 1 38 0 4 930 229 210 191 36 chr5 45262741 45262825 -107274434 - PB1D10 SINE Alu -3 114 18 4 930 499 281 63 86 chr5 45262761 45262936 -107274323 - ID_B1 SINE B4 -53 171 1 4 930 320 311 8 85 chr5 45263112 45263242 -107274017 + PB1D7 SINE Alu 1 120 0 4 930 279 304 122 46 chr5 45263725 45263856 -107273403 - L2b LINE L2 0 3375 3235 4 930 243 292 6 11 chr5 45263857 45264044 -107273215 + (CATATA)n Simple_repeat Simple_repeat 1 185 0 4 930 595 194 0 25 chr5 45264062 45264221 -107273038 + (CATA)n Simple_repeat Simple_repeat 2 156 0 4 930 202 229 0 0 chr5 45264400 45264448 -107272811 + (TCTCTG)n Simple_repeat Simple_repeat 2 49 0 4 930 393 200 5 38 chr5 45264451 45264776 -107272483 + CT-rich Low_complexity Low_complexity 1 314 0 4 930 256 192 48 48 chr5 45264780 45264884 -107272375 + (TCTCTG)n Simple_repeat Simple_repeat 5 108 0 4 930 586 294 103 43 chr5 45264992 45265273 -107271986 + MLT1B LTR MaLR 93 390 0 4 930 225 0 0 0 chr5 45265466 45265491 -107271768 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 4 930 258 226 69 79 chr5 45266067 45266167 -107271092 + MER2 DNA MER2_type 105 203 -142 4 930 308 359 43 0 chr5 45266167 45266259 -107271000 + PB1D10 SINE Alu 1 96 -21 4 930 356 284 0 0 chr5 45266280 45266354 -107270905 + ID4_ SINE ID 3 76 -7 4 930 480 295 46 8 chr5 45266362 45266492 -107270767 + MER2 DNA MER2_type 210 344 -1 4 930 210 295 66 30 chr5 45268773 45268905 -107268354 - MIR3 SINE MIR -22 186 54 4 930 288 335 103 26 chr5 45270354 45270822 -107266437 + L1ME1 LINE L1 5659 6162 -17 4 930 849 274 11 11 chr5 45270860 45271048 -107266211 + B4A SINE B4 8 195 -97 4 930 930 131 17 6 chr5 45272109 45272286 -107264973 + CT-rich Low_complexity Low_complexity 2 180 0 4 930 306 0 0 0 chr5 45272288 45272322 -107264937 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 4 930 1546 239 86 30 chr5 45273405 45273802 -107263457 - MTD LTR MaLR 0 419 1 4 930 257 350 25 25 chr5 45274601 45274771 -107262488 + MIRc SINE MIR 17 192 -76 4 930 4470 67 7 0 chr5 45274776 45275358 -107261901 + L1_Mus3 LINE L1 6050 6635 -3 4 930 233 80 141 43 chr5 45276075 45276167 -107261092 + (ATAAG)n Simple_repeat Simple_repeat 3 103 0 4 930 639 268 163 59 chr5 45276503 45276773 -107260486 + MLT1A0 LTR MaLR 111 408 0 4 930 802 214 63 21 chr5 45277059 45277250 -107260009 + ORR1B1 LTR MaLR 41 239 -155 4 930 1086 57 57 0 chr5 45277324 45277464 -107259795 - B1_Mus1 SINE Alu 0 148 1 4 930 366 288 68 0 chr5 45278279 45278397 -107258862 - MLT1G LTR MaLR -36 512 387 4 930 437 298 0 76 chr5 45278491 45278622 -107258637 - MLT1G LTR MaLR -320 271 151 4 930 184 222 0 27 chr5 45278685 45278759 -107258500 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 930 228 188 145 0 chr5 45278779 45278848 -107258411 - MLT1G LTR MaLR -506 89 11 4 930 214 274 82 31 chr5 45279549 45279647 -107257612 - L2 LINE L2 -2498 921 819 4 930 1211 193 14 0 chr5 45280156 45280374 -107256885 + URR1B DNA MER1_type 2 222 -3 4 930 472 267 87 93 chr5 45280404 45280911 -107256348 + L1MD LINE L1 2513 3016 -3130 4 930 612 325 12 23 chr5 45280956 45281129 -107256130 + ID_B1 SINE B4 3 173 -51 4 930 240 357 75 53 chr5 45281048 45281181 -107256078 + B1F1 SINE Alu 13 148 -1 4 930 483 240 66 37 chr5 45281187 45281429 -107255830 + L1MD LINE L1 3167 3415 -2731 4 930 396 0 0 0 chr5 45281710 45281754 -107255505 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 930 320 281 61 0 chr5 45281794 45281923 -107255336 + ID4 SINE ID 5 147 -5 4 930 681 279 90 38 chr5 45281923 45282269 -107254990 + L1MD LINE L1 3776 4139 -2007 4 930 1002 304 38 0 chr5 45282273 45282562 -107254697 + MTE2b LTR MaLR 1 300 -79 4 930 483 336 81 13 chr5 45282634 45282869 -107254390 + MLT1E1A LTR MaLR 415 665 -15 4 930 386 261 100 85 chr5 45283162 45283418 -107253841 + L1ME2 LINE L1 2771 3043 -3103 4 930 886 37 0 0 chr5 45283465 45283573 -107253686 + L1Md_F3 LINE L1 5479 5586 -297 4 930 8241 27 10 0 chr5 45283573 45284542 -107252717 + L1Md_F3 LINE L1 5587 6565 -19 4 930 29 70 0 0 chr5 45284791 45284848 -107252411 + AT_rich Low_complexity Low_complexity 1 57 0 4 930 959 306 64 34 chr5 45284895 45285743 -107251516 + L1ME2 LINE L1 3290 4162 -1984 4 930 1834 218 82 16 chr5 45285824 45286324 -107250935 + MT2A LTR ERVL 1 533 0 4 930 21 57 0 0 chr5 45286689 45286724 -107250535 + AT_rich Low_complexity Low_complexity 1 35 0 4 930 983 236 133 27 chr5 45286991 45287322 -107249937 - ORR1D2 LTR MaLR 0 370 5 4 930 297 317 15 8 chr5 45287767 45287953 -107249306 + L1ME2 LINE L1 5581 5768 -394 4 930 213 196 19 38 chr5 45288563 45288616 -107248643 + CT-rich Low_complexity Low_complexity 3 54 0 4 930 363 331 32 24 chr5 45288646 45288897 -107248362 + L1ME2 LINE L1 5910 6162 -2 4 930 351 0 0 0 chr5 45289283 45289322 -107247937 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 930 1551 246 48 51 chr5 45289350 45289762 -107247497 + MTD LTR MaLR 1 411 -8 4 930 1397 257 48 22 chr5 45289873 45290278 -107246981 - L1_Rod LINE L1 -12 5835 5431 4 930 258 105 0 0 chr5 45290278 45290316 -107246943 + (CAT)n Simple_repeat Simple_repeat 2 39 0 4 930 1397 257 48 22 chr5 45290316 45290411 -107246848 - L1_Rod LINE L1 -417 5430 5323 4 930 737 285 0 5 chr5 45290410 45290618 -107246641 - L1_Mur3 LINE L1 -739 5141 4935 4 930 275 332 23 25 chr5 45290669 45290886 -107246373 + Lx8 LINE L1 6082 6299 -1174 4 930 281 287 87 47 chr5 45290962 45291112 -107246147 - L2 LINE L2 -787 2632 2477 5 930 2904 24 21 0 chr5 45291264 45291324 -107245935 - ORR1A0 LTR MaLR 0 346 287 5 930 285 29 0 0 chr5 45291324 45291358 -107245901 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 930 2904 24 21 0 chr5 45291358 45291636 -107245623 - ORR1A0 LTR MaLR -60 286 2 5 930 251 368 0 10 chr5 45291641 45291737 -107245522 + MLT1H LTR MaLR 58 152 -397 5 930 708 268 82 0 chr5 45293905 45294088 -107243171 - Tigger7 DNA MER2_type -2289 202 5 5 930 432 0 0 0 chr5 45294191 45294239 -107243020 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 930 496 260 105 8 chr5 45296312 45296436 -107240823 + B1_Mur1 SINE Alu 12 147 -2 5 930 3628 85 6 4 chr5 45297717 45298248 -107239011 - L1_Mus1 LINE L1 -662 5221 4690 5 930 6899 89 10 1 chr5 45298236 45299577 -107237682 + L1_Mus1 LINE L1 5213 6567 0 5 930 299 155 0 45 chr5 45299675 45299763 -107237496 + GA-rich Low_complexity Low_complexity 4 87 0 5 930 472 255 120 37 chr5 45302037 45302228 -107235031 - MTEa LTR MaLR -162 217 11 5 930 1009 276 9 28 chr5 45303206 45303527 -107233732 - RMER1C Other Other -1 1341 1027 5 930 1613 207 119 2 chr5 45303530 45303942 -107233317 + Lx2B LINE L1 6535 6994 -6 5 930 1527 268 36 36 chr5 45303940 45303983 -107233276 - RMER1C Other Other -303 1039 1002 5 930 212 0 36 0 chr5 45303983 45304011 -107233248 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 930 1527 268 36 36 chr5 45304011 45304435 -107232824 - RMER1C Other Other -341 1001 572 5 930 635 277 23 29 chr5 45304457 45304628 -107232631 - B3 SINE B2 -42 174 5 5 930 469 242 115 16 chr5 45305214 45305336 -107231923 - B1F SINE Alu -14 135 2 5 930 267 258 84 34 chr5 45305349 45305584 -107231675 + L1MA9 LINE L1 6056 6325 -9 5 930 181 323 29 29 chr5 45305811 45305913 -107231346 - MIRb SINE MIR -45 223 122 5 930 363 254 85 135 chr5 45305929 45305952 -107231307 - B4 SINE B4 -57 235 219 5 930 1020 90 0 0 chr5 45305952 45306097 -107231162 + (TTCC)n Simple_repeat Simple_repeat 3 147 0 5 930 195 42 0 0 chr5 45306105 45306129 -107231130 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 5 930 855 207 12 6 chr5 45306129 45306299 -107230960 - ID_B1 SINE B4 -11 213 43 5 930 691 306 83 80 chr5 45306724 45307061 -107230198 - ORR1E LTR MaLR -21 338 1 5 930 1368 243 126 40 chr5 45307087 45307682 -107229577 + L1MA6 LINE L1 5603 6248 -52 5 930 609 272 114 81 chr5 45307742 45308074 -107229185 + Lx8 LINE L1 7002 7344 -129 5 930 207 0 0 0 chr5 45308080 45308103 -107229156 + (GGA)n Simple_repeat Simple_repeat 2 24 0 5 930 1233 101 0 0 chr5 45308104 45308283 -107228976 + (GGAGAA)n Simple_repeat Simple_repeat 2 180 0 5 930 25 0 0 0 chr5 45309087 45309112 -107228147 + AT_rich Low_complexity Low_complexity 1 25 0 5 930 2905 172 14 13 chr5 45309113 45309668 -107227591 - Lx LINE L1 -12 6642 6087 5 930 5186 136 24 7 chr5 45309668 45309947 -107227312 + L1_Mur2 LINE L1 3781 4056 -1821 5 930 450 0 0 0 chr5 45309947 45309997 -107227262 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 930 5186 136 24 7 chr5 45309997 45310637 -107226622 + L1_Mur2 LINE L1 4057 4714 -1163 5 930 335 292 10 20 chr5 45310765 45310863 -107226396 + MER63B DNA AcHobo 312 408 -28 5 930 333 294 116 51 chr5 45310879 45311152 -107226107 - MTEa LTR MaLR -8 371 60 5 930 873 272 32 36 chr5 45311602 45311880 -107225379 - ORR1E LTR MaLR -1 358 82 5 930 1059 166 69 51 chr5 45311869 45312085 -107225174 + URR1B DNA MER1_type 6 225 0 5 930 467 262 10 10 chr5 45312085 45312183 -107225076 - ORR1E LTR MaLR -259 100 3 5 930 615 304 29 0 chr5 45312441 45312579 -107224680 + RSINE1 SINE B4 2 143 -22 5 930 711 279 86 48 chr5 45312628 45312941 -107224318 + MTEa LTR MaLR 55 379 0 5 930 252 275 43 11 chr5 45314366 45314458 -107222801 + MLT2C1 LTR ERVL 1 95 -302 5 930 300 337 31 42 chr5 45314559 45314655 -107222604 - B1F1 SINE Alu -54 95 1 5 930 509 0 16 0 chr5 45314698 45314759 -107222500 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 5 930 521 337 6 0 chr5 45314766 45314929 -107222330 - RSINE1 SINE B4 0 165 2 5 930 371 300 30 10 chr5 45315023 45315124 -107222135 - RSINE1 SINE B4 -20 145 43 5 930 1360 265 26 54 chr5 45315136 45315762 -107221497 - L1_Mur3 LINE L1 -3936 1911 1296 5 930 213 39 0 0 chr5 45315762 45315788 -107221471 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 930 725 311 69 52 chr5 45315788 45316165 -107221094 - L1_Mur3 LINE L1 -4548 1299 906 5 930 254 236 0 18 chr5 45316872 45316928 -107220331 + CT-rich Low_complexity Low_complexity 4 58 0 5 930 282 116 0 0 chr5 45317672 45317715 -107219544 + (A)n Simple_repeat Simple_repeat 1 43 0 5 930 321 265 143 0 chr5 45317766 45317864 -107219395 - MER5A1 DNA MER1_type -15 151 40 5 930 488 252 47 0 chr5 45318902 45319029 -107218230 + ORR1E LTR MaLR 1 133 -226 5 930 682 292 0 7 chr5 45319399 45319554 -107217705 - RSINE1 SINE B4 -10 155 2 5 930 625 189 12 0 chr5 45319987 45320156 -107217103 + GA-rich Low_complexity Low_complexity 2 172 0 5 930 2815 227 165 14 chr5 45320202 45321085 -107216174 + Lx4A LINE L1 6032 7048 -10 5 930 34365 52 1 17 chr5 45321457 45326848 -107210411 + L1Md_A LINE L1 284 5586 -297 5 930 8399 38 0 0 chr5 45326848 45327844 -107209415 + L1Md_A LINE L1 5587 6582 0 5 930 22 94 0 0 chr5 45327987 45328051 -107209208 + AT_rich Low_complexity Low_complexity 1 64 0 5 930 819 272 6 12 chr5 45328051 45328215 -107209044 - RSINE1 SINE B4 0 165 3 5 930 222 277 15 0 chr5 45328597 45328662 -107208597 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 930 473 336 99 14 chr5 45328664 45328887 -107208372 - B4A SINE B4 -2 290 49 5 930 33 66 0 0 chr5 45328978 45329039 -107208220 + AT_rich Low_complexity Low_complexity 1 61 0 5 930 250 304 133 9 chr5 45330064 45330141 -107207118 - L2a LINE L2 -1 3425 3349 5 930 360 0 0 0 chr5 45330141 45330181 -107207078 + (TAA)n Simple_repeat Simple_repeat 2 41 0 5 930 250 304 133 9 chr5 45330181 45330216 -107207043 - L2a LINE L2 -78 3348 3300 5 930 297 315 11 0 chr5 45330446 45330535 -107206724 + MLT1A LTR MaLR 284 373 -1 5 930 1730 288 13 4 chr5 45330979 45331453 -107205806 - Lx8 LINE L1 -659 6814 6337 5 930 927 300 106 10 chr5 45331458 45331979 -107205280 + Lx8 LINE L1 6865 7435 -38 5 930 454 293 7 27 chr5 45333148 45333478 -107203781 + CT-rich Low_complexity Low_complexity 1 323 0 5 930 396 0 0 0 chr5 45333480 45333524 -107203735 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 930 297 0 0 0 chr5 45333525 45333558 -107203701 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 930 1432 234 81 25 chr5 45333569 45333929 -107203330 - MTD LTR MaLR -39 380 1 5 930 348 369 50 0 chr5 45335093 45335234 -107202025 + Charlie1 DNA MER1_type 2 149 -2632 5 930 375 271 51 19 chr5 45335352 45335510 -107201749 + Charlie1 DNA MER1_type 2547 2709 -72 5 930 27 0 0 0 chr5 45335701 45335728 -107201531 + AT_rich Low_complexity Low_complexity 1 27 0 5 930 375 23 0 0 chr5 45335732 45335776 -107201483 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 930 745 286 130 16 chr5 45335790 45336438 -107200821 - L1MC LINE L1 -382 5797 5051 5 930 338 103 29 0 chr5 45336658 45336726 -107200533 + (TCTCTG)n Simple_repeat Simple_repeat 4 73 0 5 930 648 277 136 45 chr5 45338423 45338688 -107198571 + B4A SINE B4 3 291 -1 5 930 223 289 0 50 chr5 45339204 45339284 -107197975 - MIR SINE MIR -146 116 41 5 930 181 310 52 0 chr5 45339998 45340056 -107197203 - L2c LINE L2 -77 3298 3238 5 930 259 285 105 68 chr5 45340219 45340381 -107196878 - L2c LINE L2 -178 3209 3042 5 930 967 320 53 48 chr5 45341225 45341602 -107195657 + MTE2b LTR MaLR 1 379 0 5 930 708 253 26 7 chr5 45341915 45342066 -107195193 + RSINE1 SINE B4 9 162 -3 5 930 897 359 49 34 chr5 45343225 45343842 -107193417 - Lx8 LINE L1 -17 7456 6831 5 930 398 355 111 39 chr5 45344285 45344619 -107192640 - ORR1E LTR MaLR -1 358 1 5 930 414 0 0 0 chr5 45345095 45345141 -107192118 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 930 317 219 0 0 chr5 45345871 45345935 -107191324 - MER82 DNA MER2_type -10 643 580 5 930 638 271 140 45 chr5 45345943 45346042 -107191217 - MTD LTR MaLR -15 364 266 5 930 405 0 0 0 chr5 45346042 45346087 -107191172 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 930 648 272 123 42 chr5 45346087 45346333 -107190926 - MTD LTR MaLR -114 265 18 5 930 605 324 74 12 chr5 45346332 45346576 -107190683 - MER82 DNA MER2_type -73 580 322 5 930 966 182 146 0 chr5 45346750 45346942 -107190317 + URR1B DNA MER1_type 6 225 0 5 930 642 245 123 15 chr5 45346963 45347158 -107190101 + B3 SINE B2 1 216 0 5 930 371 417 12 0 chr5 45347391 45347559 -107189700 + MIRb SINE MIR 37 206 -62 5 930 7570 88 30 2 chr5 45348088 45349326 -107187933 - L1_Mus4 LINE L1 -5 6631 5356 5 930 5513 47 65 18 chr5 45349326 45350013 -107187246 - L1Md_F2 LINE L1 -1 6581 5862 5 930 4159 134 8 3 chr5 45350013 45350125 -107187134 - L1_Mus4 LINE L1 -528 5355 5243 5 116 6557 141 9 0 chr5 45350125 45351174 -107186085 + L1_Mur2 LINE L1 4166 5224 -653 5 931 358 236 111 19 chr5 45351174 45351282 -107185977 - ORR1E LTR MaLR -241 118 1 5 931 642 264 88 34 chr5 45351405 45351668 -107185591 + Lx9 LINE L1 5776 6052 -1592 5 931 261 0 0 0 chr5 45351737 45351766 -107185493 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 931 895 311 57 48 chr5 45351811 45352183 -107185076 + Lx9 LINE L1 6382 6756 -888 5 931 36794 69 0 15 chr5 45352183 45358377 -107178882 - L1Md_F2 LINE L1 0 6582 489 5 931 617 311 104 86 chr5 45358439 45358898 -107178361 + Lx9 LINE L1 7014 7481 -163 5 931 543 290 53 0 chr5 45359522 45359653 -107177606 + B1F SINE Alu 1 138 -11 5 931 180 316 122 0 chr5 45360414 45360512 -107176747 - MIR SINE MIR -42 220 111 5 931 379 323 70 93 chr5 45360622 45360689 -107176570 - MIR SINE MIR 0 262 212 5 931 294 329 0 0 chr5 45360689 45360771 -107176488 - ID4 SINE ID 0 83 2 5 931 379 323 70 93 chr5 45360771 45360962 -107176297 - MIR SINE MIR -51 211 10 5 931 505 307 88 26 chr5 45361289 45361483 -107175776 + ID_B1 SINE B4 1 206 -18 5 931 188 67 0 32 chr5 45361486 45361517 -107175742 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 5 931 243 381 101 10 chr5 45363256 45363455 -107173804 - MIRc SINE MIR -17 251 35 5 931 354 45 0 0 chr5 45364042 45364086 -107173173 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 931 473 305 45 28 chr5 45364385 45364564 -107172695 + MER20 DNA MER1_type 33 214 -5 5 931 1452 331 95 57 chr5 45364653 45365445 -107171814 + MER21B LTR ERV1 24 845 -18 5 931 232 250 29 14 chr5 45366193 45366262 -107170997 + MTE2b LTR MaLR 293 362 -17 6 931 420 20 0 0 chr5 45366322 45366371 -107170888 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 931 516 257 0 38 chr5 45368869 45368974 -107168285 + PB1D10 SINE Alu 11 111 -6 6 931 202 188 78 56 chr5 45369752 45369842 -107167417 - MIRc SINE MIR -146 122 31 6 931 395 296 150 18 chr5 45370352 45370572 -107166687 - RMER5 LTR ERV1 -251 283 35 6 931 203 29 88 0 chr5 45371981 45372015 -107165244 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 6 931 24 0 0 29 chr5 45372015 45372031 -107165228 + AT_rich Low_complexity Low_complexity 1 16 0 6 931 647 252 28 14 chr5 45372031 45372172 -107165087 - B1_Mur2 SINE Alu -5 144 2 6 931 24 0 0 29 chr5 45372172 45372190 -107165069 + AT_rich Low_complexity Low_complexity 1 18 0 6 931 1017 309 18 0 chr5 45373749 45374031 -107163228 + Lx8 LINE L1 6566 6852 -621 6 931 369 285 113 28 chr5 45374031 45374208 -107163051 + Lx8 LINE L1 7282 7473 0 6 931 391 68 11 54 chr5 45374304 45374397 -107162862 + (TTTTG)n Simple_repeat Simple_repeat 2 90 0 6 931 21557 100 7 9 chr5 45375059 45378922 -107158337 + L1Md_F LINE L1 350 4204 -1679 6 931 299 261 0 0 chr5 45378953 45379022 -107158237 + Lx7 LINE L1 6370 6438 -1258 6 931 709 218 35 0 chr5 45379042 45379184 -107158075 - B1_Mus1 SINE Alu -1 147 1 6 931 21 0 0 0 chr5 45379660 45379681 -107157578 + AT_rich Low_complexity Low_complexity 1 21 0 6 931 405 183 69 20 chr5 45380299 45380403 -107156856 - B1F SINE Alu 0 149 10 6 931 270 0 0 0 chr5 45380712 45380742 -107156517 + (TA)n Simple_repeat Simple_repeat 1 30 0 6 931 9517 66 6 4 chr5 45380743 45382644 -107154615 - L1Md_F2 LINE L1 -1 6581 4675 6 931 504 0 0 0 chr5 45382650 45382706 -107154553 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 931 315 0 0 0 chr5 45382706 45382740 -107154519 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 931 2902 107 39 2 chr5 45382745 45383159 -107154100 + L1_Mus4 LINE L1 6204 6632 -4 6 931 622 161 26 13 chr5 45383196 45383347 -107153912 + GA-rich Low_complexity Low_complexity 3 155 0 6 931 6485 205 67 16 chr5 45383430 45384530 -107152729 - Lx7 LINE L1 -376 7320 6177 6 931 1169 97 0 0 chr5 45384530 45384670 -107152589 + B1_Mus1 SINE Alu 4 143 -5 6 931 229 26 26 26 chr5 45384670 45384709 -107152550 + (TTAAA)n Simple_repeat Simple_repeat 2 40 0 6 931 6485 205 67 16 chr5 45384709 45384977 -107152282 - Lx7 LINE L1 -1520 6176 5887 6 931 4915 69 3 3 chr5 45385299 45385898 -107151361 + L1_Mus3 LINE L1 6038 6636 -2 6 931 205 350 62 54 chr5 45386337 45386467 -107150792 + MIRm SINE MIR 3 133 -143 6 931 492 48 0 0 chr5 45386596 45386659 -107150600 + (TCC)n Simple_repeat Simple_repeat 3 65 0 6 931 442 269 109 0 chr5 45386659 45386778 -107150481 - B1_Mur2 SINE Alu -6 143 12 6 931 470 211 181 0 chr5 45386779 45386912 -107150347 + Lx5 LINE L1 6894 7050 0 6 931 6404 138 51 10 chr5 45387179 45388200 -107149059 - Lx2 LINE L1 -1 6996 5934 6 931 2999 131 28 20 chr5 45388197 45388707 -107148552 + Lx2 LINE L1 4363 4876 -1007 6 931 225 163 0 0 chr5 45388707 45388756 -107148503 + T-rich Low_complexity Low_complexity 1 49 0 6 931 383 252 235 0 chr5 45388768 45388887 -107148372 - RSINE1 SINE B4 -6 159 13 6 931 5580 139 8 3 chr5 45388922 45389980 -107147279 + Lx2 LINE L1 4857 5922 -1075 6 931 285 305 129 58 chr5 45390002 45390141 -107147118 + MIRb SINE MIR 16 164 -104 6 931 459 338 120 65 chr5 45391735 45392152 -107145107 + MLT1H LTR MaLR 3 442 -107 6 931 498 33 0 0 chr5 45393189 45393249 -107144010 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 931 725 265 60 14 chr5 45393260 45393478 -107143781 + MLT2C1 LTR ERVL 59 286 -111 6 931 327 65 0 0 chr5 45393479 45393525 -107143734 + (TTTG)n Simple_repeat Simple_repeat 4 49 0 6 931 353 236 194 12 chr5 45393950 45394114 -107143145 + L2a LINE L2 2952 3146 -280 6 931 266 218 0 0 chr5 45394680 45394735 -107142524 - L1MC LINE L1 -334 5790 5736 6 931 2488 152 0 24 chr5 45394753 45395170 -107142089 + MTB_Mm LTR MaLR 1 407 0 6 931 559 297 59 34 chr5 45395342 45395714 -107141545 - L1MC LINE L1 -469 5655 5271 6 931 267 140 0 0 chr5 45396012 45396062 -107141197 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 931 268 290 121 37 chr5 45396607 45396879 -107140380 - L1M3 LINE L1 -2326 3814 3520 6 931 258 344 58 13 chr5 45396929 45397085 -107140174 + Arthur1 DNA Tip100 19 181 -3766 6 931 1499 329 84 40 chr5 45397532 45398317 -107138942 + Arthur1 DNA Tip100 260 1079 -2868 6 931 1106 254 89 28 chr5 45398315 45398777 -107138482 + Arthur1 DNA Tip100 3358 3847 -100 6 931 1094 80 0 0 chr5 45399014 45399151 -107138108 - B1_Mm SINE Alu -9 138 2 6 931 358 36 36 0 chr5 45400354 45400410 -107136849 + (TTTTTG)n Simple_repeat Simple_repeat 1 58 0 6 931 21 0 0 0 chr5 45400850 45400871 -107136388 + AT_rich Low_complexity Low_complexity 1 21 0 6 931 5229 49 1 6 chr5 45401408 45402062 -107135197 + L1Md_F2 LINE L1 5927 6577 -5 6 931 1557 239 73 80 chr5 45402062 45402121 -107135138 + Lx9 LINE L1 4222 4280 -1567 6 931 1110 83 7 0 chr5 45402121 45402265 -107134994 + B1_Mus1 SINE Alu 2 146 -2 6 931 543 16 0 0 chr5 45402265 45402329 -107134930 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 6 931 1557 239 73 80 chr5 45402329 45403005 -107134254 + Lx9 LINE L1 4281 4952 -895 6 931 4006 206 16 32 chr5 45403029 45403898 -107133361 - Lx5 LINE L1 0 7050 6196 6 931 2196 85 6 62 chr5 45403914 45404251 -107133008 + ORR1A2 LTR MaLR 2 319 -8 6 931 951 213 100 7 chr5 45404264 45404543 -107132716 - Lx5 LINE L1 -873 6177 5873 6 931 241 111 0 22 chr5 45404542 45404588 -107132671 + Lx7 LINE L1 5818 5862 -1834 6 931 2238 294 98 41 chr5 45404585 45406517 -107130742 + Lx9 LINE L1 4942 7140 -504 6 931 534 31 0 0 chr5 45406690 45406754 -107130505 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 931 21 0 0 0 chr5 45406882 45406903 -107130356 + AT_rich Low_complexity Low_complexity 1 21 0 6 931 303 330 98 38 chr5 45406909 45407145 -107130114 + L1M5 LINE L1 5545 5794 -368 6 931 352 327 144 6 chr5 45408528 45408688 -107128571 + B3A SINE B2 1 182 -16 6 931 317 182 0 18 chr5 45408692 45408748 -107128511 + HAL1-3A_ME LINE L1 1975 2029 -829 6 931 277 276 115 3 chr5 45408833 45408953 -107128306 + MLT1A1 LTR MaLR 211 383 -25 6 931 2022 114 69 0 chr5 45409943 45410249 -107127010 - ORR1A2 LTR MaLR 0 327 1 6 931 1245 271 54 48 chr5 45410880 45411253 -107126006 + MTEa LTR MaLR 2 376 -3 6 931 519 17 0 0 chr5 45411639 45411699 -107125560 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 931 21 36 0 0 chr5 45411950 45411978 -107125281 + AT_rich Low_complexity Low_complexity 1 28 0 6 931 329 263 50 42 chr5 45412389 45412508 -107124751 + B4A SINE B4 4 123 -169 6 931 334 50 0 0 chr5 45412553 45412593 -107124666 + HAL1-3A_ME LINE L1 1979 2018 -840 6 931 648 198 208 17 chr5 45412598 45412829 -107124430 + Lx5 LINE L1 6771 7045 -5 6 931 210 247 13 52 chr5 45412872 45412949 -107124310 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 6 931 213 39 0 0 chr5 45412949 45412975 -107124284 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 931 1061 238 48 0 chr5 45413012 45413218 -107124041 - ID_B1 SINE B4 0 224 9 6 931 416 19 0 19 chr5 45413467 45413521 -107123738 + (TTTC)n Simple_repeat Simple_repeat 2 54 0 6 931 544 353 7 7 chr5 45414339 45414490 -107122769 - RSINE1 SINE B4 -10 155 5 6 931 184 245 0 117 chr5 45414736 45414796 -107122463 + L3 LINE CR1 3498 3550 -939 6 931 198 0 0 0 chr5 45415245 45415267 -107121992 + (A)n Simple_repeat Simple_repeat 1 22 0 6 931 215 232 68 55 chr5 45416133 45416206 -107121053 + B4A SINE B4 1 74 -218 6 931 313 123 15 15 chr5 45416249 45416315 -107120944 + GA-rich Low_complexity Low_complexity 1 66 0 6 931 239 175 0 17 chr5 45416756 45416814 -107120445 + GA-rich Low_complexity Low_complexity 4 60 0 6 931 779 300 92 18 chr5 45418375 45418701 -107118558 + MER47A DNA MER2_type 1 350 -16 6 931 192 301 93 46 chr5 45418744 45418852 -107118407 - MIRb SINE MIR -59 209 97 6 931 184 286 28 28 chr5 45419534 45419606 -107117653 + MIR SINE MIR 11 82 -180 6 931 613 309 23 62 chr5 45420030 45420334 -107116925 + B4A SINE B4 1 292 0 6 931 293 247 31 73 chr5 45420456 45420552 -107116707 - MLT1M LTR MaLR -463 209 118 6 931 225 196 0 42 chr5 45421000 45421048 -107116211 + MER5B DNA MER1_type 2 47 -131 6 931 6835 93 11 9 chr5 45421271 45422353 -107114906 + L1_Mus4 LINE L1 5509 6592 -44 6 931 2673 185 88 25 chr5 45422383 45423020 -107114239 - Lx5 LINE L1 -785 6265 5589 6 931 2204 188 90 26 chr5 45423057 45423602 -107113657 - Lx5 LINE L1 -723 5154 4575 6 931 22 35 0 0 chr5 45423604 45423633 -107113626 + AT_rich Low_complexity Low_complexity 1 29 0 6 931 189 242 76 61 chr5 45424090 45424156 -107113103 + MIR SINE MIR 31 97 -111 6 931 745 285 107 50 chr5 45424914 45425213 -107112046 + MLT2D LTR ERVL 1 316 -98 6 931 207 114 0 0 chr5 45425252 45425287 -107111972 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 6 931 321 47 0 0 chr5 45425306 45425349 -107111910 + (TCTCTG)n Simple_repeat Simple_repeat 2 44 0 6 931 498 347 103 26 chr5 45425371 45425445 -107111814 - B4 SINE B4 0 292 216 6 931 1309 45 6 6 chr5 45425445 45425625 -107111634 + L1Md_F2 LINE L1 6403 6582 0 6 931 498 347 103 26 chr5 45425625 45425745 -107111514 - B4 SINE B4 -77 215 84 6 931 218 333 171 12 chr5 45426502 45426672 -107110587 - MIRc SINE MIR -50 218 22 6 931 1951 208 17 0 chr5 45426852 45427256 -107110003 + Lx7 LINE L1 6932 7342 -354 6 931 296 207 33 0 chr5 45427277 45427398 -107109861 + (TA)n Simple_repeat Simple_repeat 1 125 0 6 931 1371 172 15 51 chr5 45427403 45427734 -107109525 + Lx7 LINE L1 7357 7675 -21 6 931 183 250 21 0 chr5 45428038 45428086 -107109173 - L2a LINE L2 0 3426 3378 6 931 379 302 118 20 chr5 45428588 45428740 -107108519 + MLT2B3 LTR ERVL 34 200 -354 6 931 452 235 7 0 chr5 45428787 45428923 -107108336 + CT-rich Low_complexity Low_complexity 1 137 0 6 931 602 311 71 35 chr5 45428926 45429209 -107108050 + MLT2B3 LTR ERVL 250 542 -12 6 931 282 263 26 13 chr5 45429220 45429297 -107107962 + MLT1H LTR MaLR 59 136 -413 6 931 1051 92 26 0 chr5 45429307 45429460 -107107799 + L1_Mus1 LINE L1 6410 6566 -1 7 931 611 21 61 20 chr5 45429768 45429867 -107107392 + (CTCA)n Simple_repeat Simple_repeat 1 103 0 7 931 1027 301 92 44 chr5 45431033 45431652 -107105607 - L1ME1 LINE L1 -49 6130 5482 7 931 350 284 65 20 chr5 45431872 45432120 -107105139 - L1ME1 LINE L1 -988 5158 4900 7 931 233 341 85 31 chr5 45432243 45432373 -107104886 - ORR1E LTR MaLR -163 196 60 7 931 239 321 12 12 chr5 45432494 45432579 -107104680 + L2a LINE L2 3342 3426 0 7 931 706 332 132 8 chr5 45432816 45433202 -107104057 - Charlie4a DNA MER1_type -43 465 32 7 931 289 92 33 44 chr5 45433957 45434048 -107103211 + T-rich Low_complexity Low_complexity 2 91 0 7 931 432 294 179 76 chr5 45434219 45434660 -107102599 - LTR50 LTR ERVL -1 794 139 7 931 240 309 11 0 chr5 45434660 45434754 -107102505 + CT-rich Low_complexity Low_complexity 1 95 0 7 931 240 35 0 0 chr5 45434895 45434924 -107102335 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 931 185 278 74 0 chr5 45435263 45435317 -107101942 - MIRb SINE MIR -56 212 155 7 931 23 0 0 0 chr5 45435322 45435345 -107101914 + AT_rich Low_complexity Low_complexity 1 23 0 7 931 180 356 49 41 chr5 45435529 45435652 -107101607 + MER5A DNA MER1_type 66 189 0 7 931 203 211 38 19 chr5 45435799 45435852 -107101407 + MER5A DNA MER1_type 7 60 -129 7 931 199 343 111 53 chr5 45436424 45436535 -107100724 + L2 LINE L2 2237 2350 -1069 7 931 3525 67 0 13 chr5 45436535 45437004 -107100255 - L1Md_F2 LINE L1 -4 6578 6116 7 931 199 343 111 53 chr5 45437004 45437117 -107100142 + L2 LINE L2 2351 2474 -945 7 931 307 267 26 154 chr5 45437118 45437180 -107100079 + L1MC1 LINE L1 1252 1301 -5101 7 931 904 252 19 0 chr5 45437180 45437386 -107099873 + B3 SINE B2 2 211 -5 7 931 376 219 68 117 chr5 45437386 45437520 -107099739 + L1MC1 LINE L1 1279 1421 -4981 7 931 312 175 0 0 chr5 45437525 45437588 -107099671 + GA-rich Low_complexity Low_complexity 2 64 0 7 931 706 50 20 0 chr5 45437588 45437687 -107099572 + (GGAA)n Simple_repeat Simple_repeat 2 102 0 7 931 332 295 105 66 chr5 45437769 45438151 -107099108 - RLTR12B LTR ERVK -234 294 12 7 931 384 270 130 96 chr5 45438151 45438691 -107098568 + L1MC1 LINE L1 1462 2019 -4489 7 931 288 227 274 12 chr5 45438753 45438872 -107098387 + L1MC1 LINE L1 1921 2084 -4424 7 931 3181 51 2 10 chr5 45438872 45439271 -107097988 + MTA_Mm LTR MaLR 1 396 0 7 931 288 227 274 12 chr5 45439271 45439392 -107097867 + L1MC1 LINE L1 2085 2223 -4285 7 931 731 306 44 20 chr5 45439396 45439702 -107097557 - MLT1A1 LTR MaLR -2 465 67 7 931 502 137 10 10 chr5 45439755 45439851 -107097408 + GA-rich Low_complexity Low_complexity 3 98 0 7 931 1212 93 0 0 chr5 45439851 45440023 -107097236 + (GAA)n Simple_repeat Simple_repeat 3 174 0 7 931 535 250 112 27 chr5 45440039 45440372 -107096887 + L1MC1 LINE L1 2264 2630 -3691 7 931 294 292 112 5 chr5 45440388 45440470 -107096789 + L1MC1 LINE L1 5178 5273 -1048 7 931 378 0 0 0 chr5 45440470 45440512 -107096747 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 931 294 292 112 5 chr5 45440512 45440625 -107096634 + L1MC1 LINE L1 5274 5393 -928 7 931 378 0 0 0 chr5 45440625 45440667 -107096592 + (TTAG)n Simple_repeat Simple_repeat 3 44 0 7 931 794 234 35 0 chr5 45440846 45441017 -107096242 + Lx5 LINE L1 6773 6949 -101 7 931 1970 282 78 26 chr5 45441013 45442037 -107095222 + L1MC1 LINE L1 5391 6471 -37 7 931 1667 35 0 0 chr5 45442054 45442254 -107095005 + L1Md_F2 LINE L1 6365 6564 -18 7 931 391 314 16 0 chr5 45442410 45442531 -107094728 + MER5A DNA MER1_type 59 181 -8 7 931 269 135 0 0 chr5 45442684 45442721 -107094538 + URR1B DNA MER1_type 1 37 -188 7 931 349 180 0 0 chr5 45442719 45442780 -107094479 + URR1B DNA MER1_type 156 216 -9 7 931 214 310 103 61 chr5 45442824 45443047 -107094212 + L2c LINE L2 3139 3369 -6 7 931 299 272 37 0 chr5 45443309 45443390 -107093869 - MER67D LTR ERV1 -137 377 294 7 931 731 220 7 0 chr5 45443477 45443618 -107093641 - B1_Mur2 SINE Alu -6 143 2 7 931 254 324 0 0 chr5 45443643 45443714 -107093545 - Lx8 LINE L1 -134 7339 7269 7 931 2369 84 10 6 chr5 45443880 45444191 -107093068 - L1_Mus3 LINE L1 -1 6637 6326 7 931 399 260 45 91 chr5 45444262 45444461 -107092798 - Lx7 LINE L1 0 7696 7507 7 931 204 357 43 0 chr5 45444825 45444895 -107092364 - L2b LINE L2 0 3375 3303 7 931 189 279 48 32 chr5 45445075 45445138 -107092121 - L2b LINE L2 -261 3165 3102 7 931 3782 56 5 2 chr5 45445338 45445784 -107091475 + L1_Mus1 LINE L1 6121 6567 0 7 931 773 201 27 92 chr5 45445964 45446179 -107091080 + B3A SINE B2 1 185 -10 7 931 198 217 167 0 chr5 45446486 45446546 -107090713 + MIR3 SINE MIR 129 198 -10 7 931 227 245 0 36 chr5 45447256 45447311 -107089948 + MIR SINE MIR 61 113 -149 7 931 495 0 0 0 chr5 45447580 45447635 -107089624 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 931 331 331 64 8 chr5 45448631 45448756 -107088503 + MIRc SINE MIR 14 145 -123 7 931 767 294 140 34 chr5 45448764 45449120 -107088139 - MER77 LTR ERVL -2 605 212 7 931 180 0 0 0 chr5 45449537 45449557 -107087702 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 931 207 0 0 0 chr5 45449578 45449601 -107087658 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 7 931 1301 229 69 60 chr5 45449694 45450043 -107087216 + ORR1D2 LTR MaLR 4 355 -15 7 931 559 294 79 25 chr5 45450351 45450630 -107086629 - HAL1b LINE L1 -454 1555 1262 7 931 751 273 36 10 chr5 45450761 45450957 -107086302 - B3 SINE B2 -14 202 2 7 931 276 292 278 11 chr5 45451304 45451491 -107085768 + L2 LINE L2 2330 2566 -853 7 931 1016 182 27 25 chr5 45451492 45451814 -107085445 - RMER6A LTR ERVK 0 756 423 7 931 226 339 25 92 chr5 45451799 45451919 -107085340 - ORR1D2 LTR MaLR -244 126 15 7 931 288 0 0 0 chr5 45453514 45453546 -107083713 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 931 1292 72 0 11 chr5 45453568 45453750 -107083509 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 7 931 2837 73 64 5 chr5 45454002 45454376 -107082883 + MTA_Mm LTR MaLR 1 396 0 7 931 360 0 0 0 chr5 45454659 45454699 -107082560 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 931 390 134 0 0 chr5 45454838 45454905 -107082354 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 931 1701 33 0 41 chr5 45455184 45455405 -107081854 + L1Md_F2 LINE L1 6370 6581 -1 7 931 990 289 26 60 chr5 45455484 45455786 -107081473 + B4A SINE B4 1 292 0 7 931 215 170 21 0 chr5 45455791 45455838 -107081421 + (TA)n Simple_repeat Simple_repeat 1 48 0 7 931 180 111 0 0 chr5 45455859 45455886 -107081373 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 931 466 135 74 37 chr5 45456200 45456308 -107080951 + L1Md_A LINE L1 6459 6570 -12 7 931 286 358 42 38 chr5 45456590 45456828 -107080431 - L3 LINE CR1 -178 4311 4073 7 931 198 167 0 0 chr5 45456854 45456890 -107080369 + A-rich Low_complexity Low_complexity 1 36 0 7 931 650 336 76 47 chr5 45456892 45457338 -107079921 - LTR40b LTR ERVL 0 462 4 7 931 21 0 0 0 chr5 45457680 45457701 -107079558 + AT_rich Low_complexity Low_complexity 1 21 0 7 931 625 310 55 63 chr5 45458252 45458986 -107078273 + L1M3c LINE L1 1647 2383 -4654 7 931 418 336 28 18 chr5 45458993 45459211 -107078048 + L1MA9 LINE L1 5881 6100 -212 7 931 268 253 152 0 chr5 45459236 45459315 -107077944 + L1MA9 LINE L1 6161 6251 -61 7 931 1238 126 32 23 chr5 45459346 45459565 -107077694 - Lx2 LINE L1 -2 6995 6775 7 931 2735 92 0 21 chr5 45459563 45459940 -107077319 - Lx2 LINE L1 -352 6645 6277 7 931 636 129 0 0 chr5 45459943 45460044 -107077215 + (TA)n Simple_repeat Simple_repeat 1 101 0 7 931 243 0 0 0 chr5 45460472 45460499 -107076760 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 7 931 632 231 133 30 chr5 45461162 45461327 -107075932 - B3A SINE B2 -16 182 1 7 931 1516 234 84 3 chr5 45461557 45461904 -107075355 - MTE2b LTR MaLR -4 375 1 7 931 396 255 69 0 chr5 45461917 45462019 -107075240 - B1F SINE Alu -8 141 33 7 931 365 260 86 39 chr5 45462498 45462626 -107074633 + LTR48 LTR ERV1 29 162 -625 7 931 570 15 0 0 chr5 45463367 45463434 -107073825 + (CA)n Simple_repeat Simple_repeat 2 68 0 7 931 6632 107 3 23 chr5 45464128 45465118 -107072141 + L1_Mus3 LINE L1 5669 6638 0 7 931 1936 117 35 0 chr5 45465101 45465383 -107071876 + L1_Mus3 LINE L1 5951 6242 -396 7 931 1326 224 201 3 chr5 45466000 45466349 -107070910 + MTD LTR MaLR 1 418 -1 7 931 317 362 27 48 chr5 45466406 45466654 -107070605 + MIR SINE MIR 3 242 -20 7 931 482 286 70 79 chr5 45467258 45467486 -107069773 - B4A SINE B4 -65 227 2 7 931 531 261 158 5 chr5 45468779 45468975 -107068284 + RMER15 LTR ERVL 336 561 -14 7 931 267 301 135 35 chr5 45469529 45469670 -107067589 + Charlie15a DNA MER1_type 67 221 -3 7 931 577 162 29 0 chr5 45469776 45469881 -107067378 + ORR1C1 LTR MaLR 271 378 0 7 931 638 353 65 14 chr5 45469994 45470270 -107066989 - B4 SINE B4 0 292 3 7 931 186 198 23 23 chr5 45470337 45470425 -107066834 + (CATATA)n Simple_repeat Simple_repeat 1 88 0 7 931 331 313 36 0 chr5 45470526 45470609 -107066650 + B1F1 SINE Alu 5 90 -59 7 931 217 152 0 0 chr5 45470618 45470651 -107066608 + A-rich Low_complexity Low_complexity 1 33 0 7 931 259 294 35 12 chr5 45470945 45471031 -107066228 - B3A SINE B2 -102 96 9 7 931 302 333 99 12 chr5 45471625 45471786 -107065473 + MTE2b LTR MaLR 1 175 -204 7 931 285 328 47 58 chr5 45471786 45471816 -107065443 + MT2A LTR ERVL 1 189 -344 7 931 3025 63 3 3 chr5 45471820 45472184 -107065075 - L1_Mus1 LINE L1 0 6567 6204 7 931 2263 62 24 0 chr5 45472184 45472472 -107064787 + L1_Mus1 LINE L1 5828 6122 -445 7 931 1054 45 98 0 chr5 45472473 45472605 -107064654 - L1_Mus1 LINE L1 0 6567 6423 7 931 611 329 22 31 chr5 45472605 45472834 -107064425 + MT2A LTR ERVL 197 423 -110 7 931 253 146 71 20 chr5 45472869 45472967 -107064292 + (TA)n Simple_repeat Simple_repeat 2 104 0 7 931 519 272 0 0 chr5 45472983 45473163 -107064096 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 931 279 0 0 0 chr5 45473164 45473195 -107064064 + (GA)n Simple_repeat Simple_repeat 2 32 0 7 931 2068 284 28 20 chr5 45473224 45473861 -107063398 - ORR1E-int LTR MaLR -937 643 2 7 931 1269 244 71 24 chr5 45473867 45474203 -107063056 - ORR1E LTR MaLR -6 353 2 7 931 197 200 121 15 chr5 45474636 45474702 -107062557 - L2a LINE L2 0 3426 3315 7 931 339 228 0 0 chr5 45475118 45475210 -107062049 + GA-rich Low_complexity Low_complexity 3 94 0 7 931 360 317 102 31 chr5 45475308 45475562 -107061697 - L1M5 LINE L1 -2792 3354 3083 7 931 317 290 50 0 chr5 45475779 45475879 -107061380 + MIR SINE MIR 137 241 -21 7 931 192 159 182 0 chr5 45475857 45475901 -107061358 + L2b LINE L2 3324 3375 0 7 931 245 318 11 0 chr5 45475900 45475988 -107061271 - MIRc SINE MIR -15 253 165 7 931 2909 94 2 12 chr5 45476564 45476975 -107060284 + L1_Mm LINE L1 5205 5611 -272 8 931 401 281 0 0 chr5 45477440 45477522 -107059737 + ID4_ SINE ID 2 83 0 8 931 543 315 90 34 chr5 45477541 45477807 -107059452 + B4A SINE B4 2 282 -10 8 931 438 20 0 0 chr5 45477854 45477905 -107059354 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 931 360 0 0 0 chr5 45477906 45477946 -107059313 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 931 478 222 51 0 chr5 45477950 45478067 -107059192 + Lx3_Mus LINE L1 209 331 -6653 8 931 6326 80 2 4 chr5 45478059 45479230 -107058029 + L1_Mus1 LINE L1 5205 6372 -195 8 931 32303 96 23 4 chr5 45479222 45479817 -107057442 + Lx3_Mus LINE L1 1039 1698 -4188 8 931 4468 39 0 0 chr5 45479817 45480309 -107056950 + L1Md_T LINE L1 6090 6581 -1 8 116 32303 89 27 5 chr5 45480309 45482480 -107054779 + Lx3_Mus LINE L1 1699 3951 -1935 8 932 5425 33 7 0 chr5 45482480 45483081 -107054178 + L1Md_T LINE L1 5978 6582 0 8 932 32303 87 31 5 chr5 45483081 45485017 -107052242 + Lx3_Mus LINE L1 3952 5922 -1087 8 932 228 35 0 0 chr5 45485017 45485046 -107052213 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 932 9778 73 53 8 chr5 45485046 45486092 -107051167 + Lx3_Mus LINE L1 5923 7009 0 8 932 388 91 30 0 chr5 45486129 45486195 -107051064 + (CA)n Simple_repeat Simple_repeat 1 68 0 8 932 2503 110 24 93 chr5 45486675 45487125 -107050134 + Lx3_Mus LINE L1 6579 6997 -12 8 932 285 333 76 43 chr5 45487756 45487966 -107049293 + ORR1E LTR MaLR 77 293 -66 8 932 201 159 0 0 chr5 45488493 45488537 -107048722 + T-rich Low_complexity Low_complexity 1 44 0 8 932 259 235 0 0 chr5 45489139 45489190 -107048069 - MLT1N2 LTR MaLR -8 554 504 8 932 2747 186 42 75 chr5 45489268 45489894 -107047365 + RMER1B Other Other 461 1065 -1 8 932 21 57 0 0 chr5 45490315 45490350 -107046909 + AT_rich Low_complexity Low_complexity 1 35 0 8 932 21 0 0 0 chr5 45490369 45490390 -107046869 + AT_rich Low_complexity Low_complexity 1 21 0 8 932 198 328 115 15 chr5 45490393 45490523 -107046736 - MIRb SINE MIR -66 202 60 8 932 372 43 0 0 chr5 45491578 45491624 -107045635 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 932 354 23 0 0 chr5 45491624 45491666 -107045593 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 932 231 320 19 39 chr5 45491682 45491786 -107045473 - Tigger7 DNA MER2_type -259 2232 2131 8 932 604 332 92 8 chr5 45491805 45492045 -107045214 - Tigger7 DNA MER2_type -2200 291 32 8 932 261 0 0 0 chr5 45492738 45492767 -107044492 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 932 369 0 0 0 chr5 45492767 45492807 -107044452 + (GA)n Simple_repeat Simple_repeat 2 42 0 8 932 245 29 29 0 chr5 45495673 45495707 -107041552 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 932 345 242 0 0 chr5 45496039 45496101 -107041158 + RSINE1 SINE B4 76 137 -28 8 932 342 0 0 0 chr5 45496120 45496158 -107041101 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 932 298 350 31 25 chr5 45496564 45496725 -107040534 - Tigger16b DNA Tigger -19 318 157 8 932 215 178 0 0 chr5 45497034 45497079 -107040180 + MIR SINE MIR 78 122 -140 8 932 518 239 25 8 chr5 45497478 45497596 -107039663 + MER20 DNA MER1_type 27 146 -73 8 932 196 277 0 0 chr5 45497767 45497814 -107039445 + MIRb SINE MIR 219 265 -3 8 932 710 138 0 8 chr5 45498094 45498218 -107039041 + (GGGA)n Simple_repeat Simple_repeat 4 126 0 8 932 463 56 28 0 chr5 45498347 45498418 -107038841 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 932 3274 71 5 2 chr5 45499343 45499738 -107037521 - MTA_Mm LTR MaLR 0 396 1 8 932 233 313 70 58 chr5 45500736 45500892 -107036367 + MIRb SINE MIR 88 245 -23 1 932 585 0 0 0 chr5 45501130 45501195 -107036064 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 932 711 300 64 38 chr5 45501231 45501498 -107035761 - B4A SINE B4 -18 274 1 3 932 490 281 0 15 chr5 45501939 45502070 -107035189 + B1F SINE Alu 19 146 -3 4 932 366 335 23 29 chr5 45503113 45503285 -107033974 + MIR SINE MIR 87 257 -5 5 932 192 40 0 0 chr5 45503388 45503413 -107033846 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 932 378 143 0 0 chr5 45504264 45504327 -107032932 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 932 243 0 0 0 chr5 45504396 45504423 -107032836 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 932 1289 242 81 24 chr5 45504884 45505256 -107032003 - MTD LTR MaLR 0 419 27 9 932 549 300 130 34 chr5 45505323 45505592 -107031667 + ORR1E LTR MaLR 64 358 -1 1 932 520 204 0 0 chr5 45506187 45506285 -107030974 - Lx5 LINE L1 -407 6643 6546 1 932 2016 174 6 3 chr5 45506286 45506643 -107030616 + Lx5 LINE L1 6654 7011 -39 1 932 228 67 0 0 chr5 45506676 45506706 -107030553 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1 932 320 152 17 0 chr5 45506817 45506876 -107030383 + MTD LTR MaLR 248 307 -112 1 932 422 269 131 0 chr5 45506955 45507115 -107030144 + B3A SINE B2 2 182 -16 1 932 1572 193 82 48 chr5 45508683 45509037 -107028222 - ORR1D1 LTR MaLR -8 366 1 1 932 267 326 0 61 chr5 45509259 45509357 -107027902 - L2c LINE L2 -2 3385 3294 1 932 586 295 129 48 chr5 45509842 45510137 -107027122 - MLT1B LTR MaLR -4 386 68 1 932 1911 222 32 24 chr5 45510161 45510572 -107026687 - MTD LTR MaLR 0 419 6 1 932 183 287 174 50 chr5 45511033 45511154 -107026105 - MIRc SINE MIR -14 254 119 1 932 420 20 0 0 chr5 45511467 45511516 -107025743 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 2 932 189 271 56 45 chr5 45512518 45512607 -107024652 - MIR SINE MIR -4 258 169 2 932 320 379 52 0 chr5 45512975 45513149 -107024110 - Charlie8 DNA MER1_type -1968 460 278 2 932 322 274 43 17 chr5 45513340 45513455 -107023804 - MER5A DNA MER1_type -25 164 47 2 932 283 365 50 40 chr5 45513762 45513962 -107023297 + L3b LINE CR1 60 261 -221 2 932 386 308 138 34 chr5 45514087 45514407 -107022852 + MER113 DNA MER1_type 2 354 -167 2 932 261 283 32 21 chr5 45514900 45514994 -107022265 + Charlie26a DNA MER1_type 90 184 -141 2 932 1110 130 0 0 chr5 45515027 45515204 -107022055 + (TTC)n Simple_repeat Simple_repeat 3 179 0 2 932 324 152 0 0 chr5 45515205 45515218 -107022041 + polypyrimidine Low_complexity Low_complexity 49 61 0 2 932 1467 34 0 0 chr5 45515218 45515395 -107021864 + (TTCTCC)n Simple_repeat Simple_repeat 3 179 0 2 932 324 152 0 0 chr5 45515395 45515440 -107021819 + polypyrimidine Low_complexity Low_complexity 4 48 0 3 932 24 0 0 0 chr5 45515846 45515870 -107021389 + AT_rich Low_complexity Low_complexity 1 24 0 3 932 423 0 0 0 chr5 45516699 45516746 -107020513 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 932 380 293 165 0 chr5 45516952 45517085 -107020174 + RSINE1 SINE B4 3 157 -8 3 932 351 44 0 0 chr5 45517090 45517135 -107020124 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 932 624 265 29 29 chr5 45517199 45517374 -107019885 - B3 SINE B2 -1 215 41 3 932 389 303 0 10 chr5 45517411 45517511 -107019748 + MLT1H LTR MaLR 46 144 -405 3 932 201 147 0 0 chr5 45518686 45518720 -107018539 + (T)n Simple_repeat Simple_repeat 1 34 0 3 932 272 291 82 77 chr5 45519333 45519527 -107017732 - B3A SINE B2 -3 195 1 3 932 736 313 44 13 chr5 45520257 45520574 -107016685 + MTE-int LTR MaLR 1 327 -1253 3 932 522 0 0 0 chr5 45520668 45520726 -107016533 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 932 581 0 14 0 chr5 45520726 45520794 -107016465 + (GA)n Simple_repeat Simple_repeat 1 70 0 4 932 23 0 0 0 chr5 45521620 45521643 -107015616 + AT_rich Low_complexity Low_complexity 1 23 0 4 932 459 269 0 0 chr5 45521672 45521776 -107015483 - ID_B1 SINE B4 -4 220 117 4 932 560 278 122 47 chr5 45521779 45522273 -107014986 - L1MEf LINE L1 -1738 4408 3878 4 932 209 57 0 28 chr5 45522327 45522363 -107014896 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 4 932 639 39 0 0 chr5 45522398 45522476 -107014783 + (GA)n Simple_repeat Simple_repeat 2 79 0 4 932 616 259 171 29 chr5 45522539 45522813 -107014446 - MLT2B4 LTR ERVL -212 344 32 4 932 258 105 0 0 chr5 45523134 45523172 -107014087 + (T)n Simple_repeat Simple_repeat 1 38 0 4 932 7657 43 0 0 chr5 45523178 45524316 -107012943 - L1Md_T LINE L1 0 6582 5445 4 932 384 318 39 19 chr5 45524319 45524579 -107012680 - L1MEf LINE L1 -4778 1464 1200 4 932 248 274 88 11 chr5 45524646 45524827 -107012432 - L1MEf LINE L1 -5186 1056 862 4 932 202 29 28 28 chr5 45524907 45524943 -107012316 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 5 932 288 133 0 0 chr5 45525751 45525811 -107011448 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 932 21 36 0 0 chr5 45526440 45526468 -107010791 + AT_rich Low_complexity Low_complexity 1 28 0 5 932 575 304 104 16 chr5 45526479 45526557 -107010702 + B4 SINE B4 3 88 -204 5 932 252 0 0 0 chr5 45526557 45526585 -107010674 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 932 575 304 104 16 chr5 45526585 45526757 -107010502 + B4 SINE B4 89 275 -17 5 932 332 357 35 14 chr5 45526801 45526943 -107010316 - L4 LINE RTE -486 1543 1399 5 932 645 14 0 0 chr5 45527897 45527971 -107009288 + (TC)n Simple_repeat Simple_repeat 1 74 0 5 932 329 349 7 57 chr5 45527980 45528120 -107009139 - MLT1A LTR MaLR -221 153 21 5 932 243 88 0 0 chr5 45529107 45529141 -107008118 + (A)n Simple_repeat Simple_repeat 1 34 0 5 932 432 55 0 0 chr5 45529997 45530052 -107007207 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 932 1277 230 64 26 chr5 45530288 45530632 -107006627 + ORR1E LTR MaLR 1 357 -2 6 932 418 329 64 0 chr5 45530670 45530810 -107006449 + Helitron1Nb_Mam RC Helitron 68 216 -900 6 932 656 317 8 17 chr5 45530884 45531118 -107006141 + Helitron1Na_Mam RC Helitron 831 1062 0 6 932 246 325 108 17 chr5 45531976 45532208 -107005051 + L2 LINE L2 1988 2240 -1179 6 932 746 273 35 27 chr5 45532295 45532555 -107004704 - Lx8 LINE L1 -7 7466 7205 6 932 378 0 0 0 chr5 45534357 45534399 -107002860 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 932 301 316 76 41 chr5 45534424 45534569 -107002690 - MLT1J LTR MaLR -322 190 41 6 932 408 150 0 0 chr5 45534648 45534728 -107002531 + (CA)n Simple_repeat Simple_repeat 1 80 0 6 932 293 327 50 28 chr5 45534893 45535055 -107002204 - MLT1H LTR MaLR -163 248 91 6 932 728 237 74 11 chr5 45536046 45536221 -107001038 + B3A SINE B2 13 198 0 6 932 523 238 0 0 chr5 45536609 45536710 -107000549 + PB1D10 SINE Alu 3 103 -14 7 932 2998 62 0 5 chr5 45537173 45537562 -106999697 - L1_Mus1 LINE L1 0 6567 6181 7 932 7487 75 0 0 chr5 45537562 45539090 -106998169 + L1_Mus1 LINE L1 5039 6566 -1 7 932 23 33 0 0 chr5 45539095 45539125 -106998134 + AT_rich Low_complexity Low_complexity 1 30 0 7 932 17841 78 52 5 chr5 45539132 45542946 -106994313 + Lx3_Mus LINE L1 3001 7005 -4 7 932 216 0 0 0 chr5 45542990 45543014 -106994245 + (A)n Simple_repeat Simple_repeat 1 24 0 7 932 297 349 78 67 chr5 45543019 45543165 -106994094 + Lx8 LINE L1 6901 7046 -427 7 932 2598 32 0 0 chr5 45543165 45543473 -106993786 - L1Md_T LINE L1 0 6582 6275 7 932 297 349 78 67 chr5 45543473 45543891 -106993368 + Lx8 LINE L1 7047 7471 -2 7 932 186 71 0 0 chr5 45544433 45544461 -106992798 + (T)n Simple_repeat Simple_repeat 1 28 0 7 932 242 29 0 28 chr5 45545492 45545528 -106991731 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 7 932 209 318 159 0 chr5 45545567 45545655 -106991604 - MIRm SINE MIR -136 140 39 8 932 292 318 0 0 chr5 45545801 45545867 -106991392 + RSINE1 SINE B4 3 68 -97 8 932 204 188 0 0 chr5 45546157 45546201 -106991058 + L2c LINE L2 3325 3380 -7 8 932 1868 161 104 35 chr5 45547331 45547509 -106989750 + MTC LTR MaLR 1 195 -226 8 932 5157 87 68 3 chr5 45547509 45548256 -106989003 + L1_Mus4 LINE L1 5839 6634 -2 8 932 1868 161 104 35 chr5 45548256 45548471 -106988788 + MTC LTR MaLR 196 421 0 8 932 396 125 0 0 chr5 45548705 45548769 -106988490 + (TATG)n Simple_repeat Simple_repeat 3 66 0 8 932 190 200 164 16 chr5 45548883 45548944 -106988315 - MIR SINE MIR -13 249 180 8 932 516 114 0 2 chr5 45548978 45549059 -106988200 - B2_Mm2 SINE B2 -136 80 1 8 932 332 271 118 53 chr5 45549796 45549948 -106987311 + MLT1E2 LTR MaLR 74 235 -392 8 932 344 281 8 51 chr5 45549967 45550169 -106987090 + L1M2 LINE L1 5237 5435 -856 8 932 416 316 88 9 chr5 45550174 45550401 -106986858 + Lx8 LINE L1 7153 7397 -76 9 932 968 280 59 3 chr5 45550440 45550813 -106986446 + L1M2 LINE L1 5431 5824 -476 8 932 510 270 0 0 chr5 45550965 45551080 -106986179 - Lx8 LINE L1 -167 7306 7192 9 932 628 359 38 35 chr5 45551187 45551554 -106985705 + MLT1E2 LTR MaLR 204 571 -56 8 932 313 326 40 88 chr5 45551826 45551974 -106985285 - LTR33A_ LTR ERVL -383 148 8 9 932 11182 91 60 1 chr5 45552033 45554225 -106983034 - L1_Mur1 LINE L1 -2874 3012 676 9 932 973 221 18 75 chr5 45554308 45554641 -106982618 - L1_Mur1 LINE L1 -6668 316 3 9 932 324 333 8 45 chr5 45554649 45554781 -106982478 - Lx8 LINE L1 -565 6908 6782 9 932 186 304 0 21 chr5 45555254 45555301 -106981958 + MIR SINE MIR 123 168 -94 9 932 564 15 0 0 chr5 45555701 45555766 -106981493 + (TC)n Simple_repeat Simple_repeat 2 66 0 9 932 345 24 0 0 chr5 45555766 45555807 -106981452 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 932 1086 259 165 3 chr5 45555810 45556132 -106981127 + MTD LTR MaLR 46 419 0 9 932 21 0 0 0 chr5 45556135 45556156 -106981103 + AT_rich Low_complexity Low_complexity 1 21 0 9 932 251 202 56 37 chr5 45556463 45556571 -106980688 + L1MEg LINE L1 1315 1424 -4818 1 932 207 100 0 0 chr5 45556821 45556851 -106980408 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 932 26 74 0 0 chr5 45557133 45557187 -106980072 + AT_rich Low_complexity Low_complexity 1 54 0 1 932 1994 147 104 5 chr5 45557243 45557626 -106979633 + MTC LTR MaLR 1 421 0 1 932 2937 257 54 5 chr5 45558176 45558919 -106978340 + Lx8 LINE L1 6554 7332 -141 1 932 233 262 0 0 chr5 45558941 45559002 -106978257 + Lx8 LINE L1 7411 7471 -2 1 932 272 272 69 69 chr5 45559011 45559185 -106978074 + L1MEg LINE L1 3877 4050 -2096 1 932 601 188 98 30 chr5 45560363 45560566 -106976693 - Lx9 LINE L1 -6 7638 7422 1 932 443 181 0 0 chr5 45560579 45560651 -106976608 - ID_B1 SINE B4 -28 196 125 1 932 6035 27 6 0 chr5 45561358 45562063 -106975196 - L1Md_F3 LINE L1 0 6584 5876 1 932 1097 199 5 9 chr5 45562823 45563036 -106974223 + B3 SINE B2 1 212 -4 1 932 752 293 10 0 chr5 45563480 45563688 -106973571 - B3 SINE B2 -4 212 3 1 932 21 0 0 0 chr5 45563999 45564020 -106973239 + AT_rich Low_complexity Low_complexity 1 21 0 1 932 911 286 98 42 chr5 45565803 45566211 -106971048 - Lx8 LINE L1 -84 7389 6959 1 932 258 202 117 20 chr5 45566810 45566887 -106970372 - MTEa LTR MaLR -14 365 286 1 932 541 331 114 37 chr5 45567123 45567421 -106969838 - MLT1F2 LTR MaLR -75 485 165 1 932 479 299 61 20 chr5 45567461 45567582 -106969677 + RSINE1 SINE B4 3 132 -33 1 932 450 0 0 0 chr5 45567582 45567632 -106969627 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 932 479 299 61 20 chr5 45567632 45567657 -106969602 + RSINE1 SINE B4 133 155 -10 1 932 2463 217 70 68 chr5 45567657 45568025 -106969234 + RMER17D2 LTR ERVK 3 389 -420 1 932 689 53 11 0 chr5 45568025 45568119 -106969140 + (TC)n Simple_repeat Simple_repeat 2 96 0 1 932 2463 217 70 68 chr5 45568119 45568516 -106968743 + RMER17D2 LTR ERVK 390 794 -15 1 932 333 68 0 0 chr5 45568548 45568592 -106968667 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 932 304 284 21 41 chr5 45568740 45568982 -106968277 + L1M3 LINE L1 3013 3249 -2891 1 932 266 273 15 0 chr5 45569056 45569122 -106968137 + ID4_ SINE ID 17 83 0 1 932 741 109 10 11 chr5 45569263 45569383 -106967876 - B1_Mm SINE Alu -1 146 1 1 932 679 286 50 41 chr5 45569383 45569682 -106967577 + L1M3 LINE L1 3430 3723 -2417 1 932 264 59 0 0 chr5 45569682 45569716 -106967543 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 932 679 286 50 41 chr5 45569716 45569835 -106967424 + L1M3 LINE L1 3724 3851 -2289 1 932 234 0 0 0 chr5 45569868 45569894 -106967365 + (T)n Simple_repeat Simple_repeat 1 26 0 1 932 432 359 92 44 chr5 45570020 45570314 -106966945 - ORR1E LTR MaLR 0 359 52 1 932 6000 59 0 0 chr5 45570451 45571233 -106966026 + L1Md_F2 LINE L1 4805 5586 -297 1 932 8160 47 2 0 chr5 45571234 45572227 -106965032 + L1Md_F2 LINE L1 5588 6582 0 1 932 1205 174 18 40 chr5 45572721 45572948 -106964311 - URR1B DNA MER1_type -3 222 1 1 932 463 314 27 99 chr5 45572948 45572979 -106964280 + CYRA11_Mm Unknown Y-chromosome 174 412 -205 1 932 762 234 184 15 chr5 45572967 45573254 -106964005 + MTD LTR MaLR 39 407 -12 1 932 331 394 48 25 chr5 45573560 45573875 -106963384 - Charlie20a DNA Charlie -194 613 292 1 932 603 326 108 19 chr5 45574144 45574460 -106962799 - MLT1D LTR MaLR 0 505 162 1 932 1133 85 108 0 chr5 45577530 45577706 -106959553 - B2_Mm2 SINE B2 0 195 1 1 932 320 298 118 27 chr5 45578489 45578710 -106958549 + L1MC5 LINE L1 7684 7924 -37 1 932 1268 285 41 14 chr5 45579202 45579547 -106957712 + ORR1D2 LTR MaLR 13 366 -4 1 932 14079 60 8 7 chr5 45579582 45582203 -106955056 - L1Md_F2 LINE L1 -3 6579 3956 1 932 386 269 15 30 chr5 45583268 45583402 -106953857 - HAL1-2a_MD LINE L1 -528 2496 2365 1 932 318 250 192 0 chr5 45583403 45583414 -106953845 - B1F SINE Alu 0 149 26 1 932 406 237 118 0 chr5 45583414 45583507 -106953752 - ID_B1 SINE B4 -14 210 107 1 932 198 0 0 0 chr5 45583826 45583848 -106953411 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1 932 5771 134 19 1 chr5 45583850 45584738 -106952521 - Lx4A LINE L1 -8 7050 6147 1 932 604 81 0 0 chr5 45584738 45584824 -106952435 + L1_Mur2 LINE L1 4820 4905 -972 1 932 212 238 49 24 chr5 45585112 45585194 -106952065 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 1 932 427 239 117 0 chr5 45585465 45585628 -106951631 + L1MA4 LINE L1 5747 5928 -372 1 932 274 269 0 88 chr5 45585921 45586080 -106951179 + B1F2 SINE Alu 1 145 -4 1 932 396 0 0 0 chr5 45586187 45586231 -106951028 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 932 309 169 0 0 chr5 45586546 45586629 -106950630 + CT-rich Low_complexity Low_complexity 2 84 0 1 932 233 295 42 0 chr5 45587685 45587780 -106949479 + MIRc SINE MIR 24 122 -146 1 932 2092 172 3 5 chr5 45588716 45589102 -106948157 + Lx LINE L1 6269 6653 -1 1 932 416 291 8 30 chr5 45589685 45589816 -106947443 - Charlie9 DNA MER1_type -2629 128 1 1 932 396 0 0 0 chr5 45589962 45590006 -106947253 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 932 180 0 0 0 chr5 45590358 45590378 -106946881 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 932 342 0 0 0 chr5 45590399 45590437 -106946822 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 932 737 252 20 0 chr5 45590447 45590598 -106946661 - B3A SINE B2 -43 155 2 1 932 399 404 53 55 chr5 45590800 45591233 -106946026 - LTR16D1 LTR ERVL -241 434 3 1 932 228 287 29 79 chr5 45591495 45591538 -106945721 + MLT1A1 LTR MaLR 276 313 -95 1 932 1114 206 248 23 chr5 45591538 45591841 -106945418 - ORR1D1 LTR MaLR -2 372 2 1 932 228 287 29 79 chr5 45591841 45591937 -106945322 + MLT1A1 LTR MaLR 314 408 0 1 932 276 276 151 8 chr5 45592101 45592356 -106944903 + L1MB1 LINE L1 5774 6084 -105 1 932 4159 74 4 18 chr5 45592619 45593172 -106944087 - L1Md_F2 LINE L1 -1 6581 6037 1 932 406 268 34 53 chr5 45593341 45593550 -106943709 + L1MA10 LINE L1 6080 6284 -50 1 932 387 0 0 0 chr5 45593551 45593594 -106943665 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 932 1043 285 103 9 chr5 45594579 45594919 -106942340 + MTE2b LTR MaLR 1 372 -7 1 932 308 382 99 35 chr5 45595225 45595537 -106941722 - MLT1L LTR MaLR -122 488 157 1 932 252 296 73 56 chr5 45595857 45596036 -106941223 + L2a LINE L2 3226 3407 -19 1 932 23 54 0 0 chr5 45596714 45596751 -106940508 + AT_rich Low_complexity Low_complexity 1 37 0 1 932 944 138 11 39 chr5 45596814 45596995 -106940264 - L1_Mus3 LINE L1 0 6638 6463 1 932 821 242 54 45 chr5 45598412 45598633 -106938626 + B4 SINE B4 1 223 -69 1 932 294 308 12 60 chr5 45598659 45598742 -106938517 + B4 SINE B4 214 292 0 1 932 360 59 0 0 chr5 45598786 45598837 -106938422 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 932 270 0 0 0 chr5 45598837 45598866 -106938393 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 932 348 324 53 66 chr5 45599838 45600066 -106937193 + Tigger8 DNA MER2_type 419 643 -23 1 932 588 213 58 53 chr5 45600116 45600359 -106936900 + Lx9 LINE L1 7401 7644 0 1 932 973 313 39 21 chr5 45600701 45601034 -106936225 - MER2 DNA MER2_type -4 341 3 1 932 220 319 100 60 chr5 45601138 45601189 -106936070 - RSINE1 SINE B4 -60 105 2 1 932 247 204 0 0 chr5 45601189 45601238 -106936021 - B3A SINE B2 -149 49 1 1 932 285 270 38 69 chr5 45601603 45601646 -106935613 + ID_B1 SINE B4 69 222 -2 1 932 320 243 95 43 chr5 45601646 45601762 -106935497 + B1F SINE Alu 28 149 0 1 932 772 251 4 33 chr5 45602334 45602529 -106934730 + B3A SINE B2 1 183 -12 1 932 872 243 14 60 chr5 45602536 45602751 -106934508 + B3 SINE B2 2 206 -10 1 932 628 307 94 34 chr5 45602799 45603065 -106934194 - MLT1A0 LTR MaLR -74 291 10 1 932 488 241 18 9 chr5 45603827 45603936 -106933323 + RSINE1 SINE B4 20 129 -36 1 932 248 354 55 8 chr5 45604247 45604412 -106932847 - MIR SINE MIR -91 177 8 1 932 280 343 25 20 chr5 45604409 45604567 -106932692 + MIRb SINE MIR 27 186 -82 1 932 185 364 45 9 chr5 45605252 45605363 -106931896 + MIR3 SINE MIR 81 195 -13 1 932 225 276 0 0 chr5 45605665 45605723 -106931536 + MER94 DNA AcHobo 4 61 -73 1 932 273 311 102 62 chr5 45605761 45606247 -106931012 + L2b LINE L2 2586 3101 -274 1 932 201 94 0 0 chr5 45606250 45606282 -106930977 + (GGGTG)n Simple_repeat Simple_repeat 4 35 0 1 932 1096 23 28 34 chr5 45606282 45606461 -106930798 + (GTGTG)n Simple_repeat Simple_repeat 1 178 0 1 932 792 226 24 110 chr5 45606465 45606719 -106930540 - B4A SINE B4 -59 233 2 1 932 215 190 17 0 chr5 45606946 45607004 -106930255 + (TTCA)n Simple_repeat Simple_repeat 2 60 0 1 932 1557 284 47 26 chr5 45608392 45609038 -106928221 + Tigger7 DNA MER2_type 1 438 -2053 1 932 494 70 14 0 chr5 45610829 45610900 -106926359 + (GGA)n Simple_repeat Simple_repeat 2 73 0 1 932 206 301 82 0 chr5 45611317 45611390 -106925869 + MER5A DNA MER1_type 55 133 -56 1 932 723 231 74 60 chr5 45611413 45611629 -106925630 - ID_B1 SINE B4 -3 221 3 1 932 474 264 41 14 chr5 45611980 45612126 -106925133 + MER57C2 LTR ERV1 285 434 0 1 932 308 297 67 74 chr5 45612161 45612310 -106924949 + MIR SINE MIR 76 223 -39 1 116 17999 85 44 17 chr5 45612898 45616241 -106921018 + L1Md_F LINE L1 382 3817 -2066 1 933 5309 77 20 6 chr5 45616241 45616950 -106920309 + L1Md_F2 LINE L1 5859 6577 -5 1 933 793 283 0 5 chr5 45618020 45618208 -106919051 + MTE2b LTR MaLR 10 196 -183 1 933 1866 173 28 14 chr5 45618211 45618568 -106918691 + ORR1B1 LTR MaLR 33 394 0 1 933 255 146 0 0 chr5 45618670 45618725 -106918534 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 933 453 319 117 16 chr5 45618780 45618968 -106918291 - MER20 DNA MER1_type -12 207 1 2 933 1256 230 100 17 chr5 45619016 45619366 -106917893 - MTE2b LTR MaLR 0 379 1 2 933 228 250 66 77 chr5 45619719 45619810 -106917449 - MER20 DNA MER1_type -26 193 104 2 933 1085 233 5 5 chr5 45619855 45620071 -106917188 - B3 SINE B2 0 216 1 2 933 558 266 87 19 chr5 45620108 45620269 -106916990 + B3A SINE B2 3 174 -24 2 933 1219 225 58 55 chr5 45620301 45620644 -106916615 - Lx7 LINE L1 0 7696 7353 2 933 26 0 0 0 chr5 45620644 45620670 -106916589 + AT_rich Low_complexity Low_complexity 1 26 0 2 933 330 291 91 50 chr5 45621317 45621538 -106915721 - LTR85b LTR Gypsy? -159 625 396 2 933 318 87 0 0 chr5 45621899 45621945 -106915314 + (A)n Simple_repeat Simple_repeat 1 46 0 2 933 673 215 14 14 chr5 45621954 45622100 -106915159 + B1_Mur2 SINE Alu 2 147 -2 2 933 685 240 84 61 chr5 45622197 45622515 -106914744 + ORR1E LTR MaLR 1 375 -4 2 933 2439 93 3 3 chr5 45622585 45622909 -106914350 + ORR1A2 LTR MaLR 4 327 0 2 933 188 324 73 18 chr5 45623617 45623727 -106913532 - L2a LINE L2 -49 3377 3262 2 933 1589 243 24 19 chr5 45623970 45624347 -106912912 + MTEa LTR MaLR 1 379 0 2 933 1731 154 136 14 chr5 45625027 45625396 -106911863 - MTC LTR MaLR -2 419 6 2 933 234 194 14 56 chr5 45625639 45625710 -106911549 - MLT1A1 LTR MaLR -16 392 325 2 933 25 31 0 0 chr5 45626328 45626360 -106910899 + AT_rich Low_complexity Low_complexity 1 32 0 2 933 522 182 0 0 chr5 45626503 45626662 -106910597 + GA-rich Low_complexity Low_complexity 6 164 0 2 933 203 341 33 0 chr5 45626915 45627006 -106910253 - L2 LINE L2 -578 2841 2748 2 933 195 345 0 0 chr5 45627629 45627687 -106909572 - MIRb SINE MIR -10 258 201 2 933 236 309 26 35 chr5 45627741 45627855 -106909404 + Tigger1 DNA MER2_type 11 123 -2295 2 933 526 246 81 30 chr5 45627874 45628071 -106909188 + Tigger1 DNA MER2_type 2211 2417 -1 2 933 608 257 151 16 chr5 45628164 45628350 -106908909 + B3 SINE B2 5 215 -1 2 933 298 261 0 0 chr5 45628658 45628727 -106908532 + MER63B DNA AcHobo 318 386 -50 2 933 180 200 0 0 chr5 45629463 45629493 -106907766 - L2b LINE L2 -97 3278 3249 2 933 462 250 162 14 chr5 45630968 45631110 -106906149 + RSINE1 SINE B4 3 165 0 2 933 1056 223 175 9 chr5 45631264 45631612 -106905647 - MTD LTR MaLR 0 419 14 2 933 247 330 121 9 chr5 45631825 45631941 -106905318 - ORR1D2 LTR MaLR -230 140 12 2 933 470 285 99 90 chr5 45632142 45632585 -106904674 - L1MC4 LINE L1 -751 7291 6845 2 933 357 299 60 60 chr5 45632613 45632947 -106904312 + L1MC4 LINE L1 7426 7759 -283 2 933 2882 71 45 10 chr5 45633140 45633537 -106903722 - RLTR10A LTR ERVK 0 411 1 2 933 5401 62 8 14 chr5 45633537 45634240 -106903019 - RLTR10-int LTR ERVK -1 1986 1288 2 933 1664 69 5 5 chr5 45634241 45634459 -106902800 - IAP-d-int LTR ERVK -658 5884 5667 2 933 1938 50 131 22 chr5 45634463 45634730 -106902529 - IAP-d-int LTR ERVK -1015 5527 5232 2 933 34063 69 2 19 chr5 45634731 45639898 -106897361 + L1Md_A LINE L1 511 5586 -297 2 933 9065 10 0 0 chr5 45639898 45640894 -106896365 + L1Md_A LINE L1 5587 6582 0 2 933 1627 43 0 0 chr5 45640895 45641083 -106896176 + L1Md_F2 LINE L1 5399 5586 -297 2 933 8223 49 0 4 chr5 45641083 45642074 -106895185 + L1Md_F2 LINE L1 5587 6573 -9 2 933 387 0 0 0 chr5 45642260 45642303 -106894956 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 2 933 1681 75 48 4 chr5 45642303 45642523 -106894736 - IAP-d-int LTR ERVK -1305 5237 5007 2 933 502 202 37 0 chr5 45642540 45642649 -106894610 - IAP-d-int LTR ERVK -6083 459 347 2 933 1902 81 2 41 chr5 45642643 45643061 -106894198 - IAP-d-int LTR ERVK -1385 602 302 2 933 2801 63 76 0 chr5 45643061 45643443 -106893816 - RLTR10A LTR ERVK 0 411 1 2 933 1257 113 10 0 chr5 45644029 45644224 -106893035 - URR1B DNA MER1_type 0 225 29 2 933 218 256 0 0 chr5 45644500 45644543 -106892716 - PB1D7 SINE Alu -19 101 59 2 933 327 237 0 0 chr5 45644549 45644625 -106892634 - Tigger5 DNA MER2_type -40 2366 2291 2 933 260 227 75 85 chr5 45644719 45644825 -106892434 - Tigger5 DNA MER2_type -2258 148 44 2 933 332 273 94 67 chr5 45644949 45645098 -106892161 - MER5A1 DNA MER1_type -6 160 8 2 933 308 227 69 11 chr5 45645587 45645686 -106891573 + L2c LINE L2 3249 3347 -40 2 933 342 305 26 13 chr5 45645763 45645916 -106891343 - MER104 DNA Tc2 -21 160 6 2 933 535 296 9 101 chr5 45645919 45646137 -106891122 + B3A SINE B2 1 198 0 2 933 252 289 89 51 chr5 45646895 45647052 -106890207 + MIR SINE MIR 89 251 -11 2 933 444 19 0 0 chr5 45647166 45647219 -106890040 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 933 730 271 95 13 chr5 45647227 45647459 -106889800 - B4A SINE B4 -41 251 1 2 933 1646 16 22 0 chr5 45648548 45648733 -106888526 - B2_Mm1a SINE B2 -3 190 2 2 933 29 70 0 0 chr5 45648806 45648863 -106888396 + AT_rich Low_complexity Low_complexity 1 57 0 2 933 381 209 103 11 chr5 45649448 45649535 -106887724 - PB1D10 SINE Alu -7 110 16 2 933 1167 291 79 17 chr5 45649623 45650043 -106887216 - MER44B DNA MER2_type -42 508 63 2 933 521 250 24 60 chr5 45650516 45650682 -106886577 + RSINE1 SINE B4 4 163 -2 2 933 1184 75 0 0 chr5 45650722 45650881 -106886378 + B2_Mm1t SINE B2 2 160 -33 2 933 423 0 0 0 chr5 45650881 45650928 -106886331 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 2 933 553 259 77 49 chr5 45650928 45650951 -106886308 + B3A SINE B2 166 189 -9 2 933 303 338 73 0 chr5 45651211 45651362 -106885897 + MIR SINE MIR 88 249 -13 2 933 252 326 129 7 chr5 45651366 45651505 -106885754 - MLT1I LTR MaLR -1 410 255 2 933 232 321 133 9 chr5 45651630 45651743 -106885516 + MLT1A1 LTR MaLR 1 127 -281 2 933 3328 50 111 2 chr5 45652057 45652499 -106884760 + L1Md_F2 LINE L1 6085 6574 -8 2 933 261 75 0 0 chr5 45652517 45652557 -106884702 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2 933 826 360 75 32 chr5 45652613 45653270 -106883989 + MTE-int LTR MaLR 1 685 -895 2 933 914 167 0 24 chr5 45653313 45653479 -106883780 + ORR1D1 LTR MaLR 1 162 -212 2 933 786 164 0 0 chr5 45653479 45653625 -106883634 + (TCTA)n Simple_repeat Simple_repeat 3 148 0 2 933 799 161 61 24 chr5 45653625 45653790 -106883469 + ORR1D1 LTR MaLR 164 334 -40 2 933 1821 332 47 51 chr5 45653966 45654755 -106882504 + MTE-int LTR MaLR 766 1551 -29 2 933 730 20 0 0 chr5 45654955 45655053 -106882206 - L1Md_F2 LINE L1 -12 6570 6473 2 933 711 259 106 8 chr5 45655484 45655720 -106881539 - L1MA8 LINE L1 -444 5847 5580 2 933 282 73 0 0 chr5 45656024 45656065 -106881194 + (GGA)n Simple_repeat Simple_repeat 2 42 0 2 933 239 187 21 32 chr5 45656243 45656337 -106880922 + GA-rich Low_complexity Low_complexity 3 95 0 2 933 264 59 0 0 chr5 45656496 45656530 -106880729 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 2 933 281 141 47 0 chr5 45656676 45656740 -106880519 + CT-rich Low_complexity Low_complexity 2 68 0 2 933 216 0 0 0 chr5 45657438 45657462 -106879797 + (A)n Simple_repeat Simple_repeat 1 24 0 2 933 375 23 0 0 chr5 45657730 45657774 -106879485 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 933 257 219 16 24 chr5 45657946 45658072 -106879187 + GA-rich Low_complexity Low_complexity 1 125 0 2 933 369 0 0 0 chr5 45659366 45659407 -106877852 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2 933 756 188 0 0 chr5 45659412 45659540 -106877719 - B1_Mur1 SINE Alu -15 134 7 2 933 8149 80 0 18 chr5 45659993 45661081 -106876178 + Lx LINE L1 5587 6654 0 2 933 1079 211 10 5 chr5 45661134 45661343 -106875916 + B3 SINE B2 1 210 -6 2 933 456 51 0 0 chr5 45661688 45661747 -106875512 + (TGG)n Simple_repeat Simple_repeat 2 60 0 2 933 216 228 35 0 chr5 45661782 45661839 -106875420 - MIR SINE MIR -65 143 85 2 933 181 296 113 0 chr5 45662034 45662105 -106875154 + L2b LINE L2 3156 3234 -141 2 933 525 32 0 0 chr5 45663541 45663604 -106873655 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 933 1132 68 0 7 chr5 45663681 45663829 -106873430 + B1_Mus2 SINE Alu 1 147 0 2 933 923 161 0 11 chr5 45663829 45664005 -106873254 + GA-rich Low_complexity Low_complexity 1 174 0 2 933 453 322 23 0 chr5 45664369 45664540 -106872719 + MIR SINE MIR 43 217 -45 2 933 612 305 83 11 chr5 45665219 45665484 -106871775 - B4A SINE B4 -8 284 1 2 933 2682 296 80 52 chr5 45665750 45668008 -106869251 - L1M2 LINE L1 0 5880 3660 2 933 718 73 28 0 chr5 45668009 45668118 -106869141 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 2 933 264 59 0 0 chr5 45669203 45669237 -106868022 + (TCC)n Simple_repeat Simple_repeat 1 34 0 2 933 726 181 0 0 chr5 45669709 45669853 -106867406 + CT-rich Low_complexity Low_complexity 2 145 0 2 933 185 280 26 26 chr5 45670372 45670449 -106866810 - MIR SINE MIR -78 130 54 2 933 5133 59 18 57 chr5 45671036 45671586 -106865673 + Lx3_Mus LINE L1 6306 6843 -166 2 933 1277 22 0 0 chr5 45671586 45671725 -106865534 + B1_Mus1 SINE Alu 2 140 -8 2 933 5133 59 18 57 chr5 45671725 45671883 -106865376 + Lx3_Mus LINE L1 6844 6985 -24 2 933 2849 3 0 0 chr5 45671883 45672181 -106865078 + L1Md_T LINE L1 6283 6580 -2 2 933 5133 59 18 57 chr5 45672181 45672204 -106865055 + Lx3_Mus LINE L1 6986 7008 -1 2 933 25 0 0 0 chr5 45672230 45672255 -106865004 + AT_rich Low_complexity Low_complexity 1 25 0 2 933 462 279 94 10 chr5 45672316 45672508 -106864751 + MER2 DNA MER2_type 53 260 -85 2 933 486 251 107 57 chr5 45672746 45672923 -106864336 - B3A SINE B2 -5 193 8 2 933 968 249 95 13 chr5 45673189 45673491 -106863768 + L1MA4 LINE L1 5589 5930 -370 2 933 399 221 0 0 chr5 45673502 45673629 -106863630 + (CA)n Simple_repeat Simple_repeat 2 128 0 2 933 388 172 97 65 chr5 45673639 45673763 -106863496 + HAL1-3A_ME LINE L1 1975 2102 -756 2 933 318 259 53 112 chr5 45674758 45674910 -106862349 + ORR1E LTR MaLR 217 359 0 2 933 669 243 115 70 chr5 45675050 45675293 -106861966 + MTD LTR MaLR 1 254 -165 2 933 737 237 186 0 chr5 45677006 45677183 -106860076 - B3 SINE B2 -6 210 1 2 933 257 232 24 12 chr5 45677466 45677549 -106859710 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 933 280 289 65 28 chr5 45677772 45677879 -106859380 + LTR82B Low_complexity ERVL 557 667 -163 2 933 212 164 33 0 chr5 45678620 45678681 -106858578 + (TCTG)n Simple_repeat Simple_repeat 2 64 0 3 933 273 57 0 0 chr5 45678682 45678717 -106858542 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 933 2919 75 52 18 chr5 45678771 45679152 -106858107 + L1_Mus1 LINE L1 6174 6567 0 3 933 459 261 84 19 chr5 45679637 45679852 -106857407 - Charlie5 DNA MER1_type -1 2623 2395 3 933 230 228 18 0 chr5 45680232 45680289 -106856970 - Charlie5 DNA MER1_type -2564 60 3 3 933 281 304 21 32 chr5 45680845 45680940 -106856319 - L2 LINE L2 -662 2757 2664 3 933 482 317 66 96 chr5 45682047 45682486 -106854773 + MLT1C LTR MaLR 34 459 -8 3 933 180 97 0 0 chr5 45682869 45682900 -106854359 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 3 933 1048 48 14 7 chr5 45683291 45683438 -106853821 + (CACCC)n Simple_repeat Simple_repeat 4 151 0 3 933 23 0 0 0 chr5 45685023 45685046 -106852213 + AT_rich Low_complexity Low_complexity 1 23 0 3 933 805 273 64 62 chr5 45686200 45686606 -106850653 - MLT2B2 LTR ERVL -7 555 5 3 933 293 284 121 50 chr5 45687376 45687517 -106849742 + LTR84a LTR ERVL 69 219 -538 3 933 324 130 0 0 chr5 45687526 45687595 -106849664 + (A)n Simple_repeat Simple_repeat 1 69 0 3 933 353 326 98 75 chr5 45687959 45688264 -106848995 + ORR1E LTR MaLR 1 312 -47 3 933 303 93 0 0 chr5 45688307 45688350 -106848909 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 3 933 734 254 214 12 chr5 45689312 45689635 -106847624 + RMER5 LTR ERV1 147 534 0 3 933 219 69 0 0 chr5 45690686 45690715 -106846544 + (CTTTG)n Simple_repeat Simple_repeat 2 30 0 3 933 653 264 106 33 chr5 45691161 45691556 -106845703 - LTR37A LTR ERV1 0 426 3 3 933 236 386 69 10 chr5 45691973 45692075 -106845184 - LTR16C LTR ERVL -227 262 155 3 933 892 214 29 0 chr5 45693268 45693441 -106843818 + B3A SINE B2 5 182 -16 3 933 2340 23 23 0 chr5 45693576 45693837 -106843422 + L1Md_F3 LINE L1 6316 6582 -2 3 933 803 236 30 85 chr5 45693849 45694048 -106843211 + B3 SINE B2 1 188 -28 3 933 237 108 0 0 chr5 45694051 45694088 -106843171 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 933 1859 49 0 0 chr5 45694104 45694330 -106842929 - L1Md_F2 LINE L1 -20 6562 6337 3 933 386 311 57 57 chr5 45694816 45694956 -106842303 + MLT1F2 LTR MaLR 17 156 -404 3 933 293 315 108 51 chr5 45695057 45695271 -106841988 - ORR1E LTR MaLR -130 229 4 3 933 24 32 0 0 chr5 45695590 45695621 -106841638 + AT_rich Low_complexity Low_complexity 1 31 0 3 933 248 311 18 54 chr5 45695753 45695865 -106841394 + MLT1A LTR MaLR 5 112 -262 3 933 3047 180 43 19 chr5 45695877 45696708 -106840551 - RMER19B LTR ERVK -7 895 1 3 933 20206 21 2 1 chr5 45696751 45699065 -106838194 + L1Md_T LINE L1 3271 5586 -297 3 933 8961 32 0 0 chr5 45699065 45700086 -106837173 + L1Md_T LINE L1 5587 6582 0 3 933 1714 84 13 0 chr5 45700091 45700317 -106836942 + L1Md_F2 LINE L1 5991 6219 -363 3 933 198 0 0 0 chr5 45700319 45700341 -106836918 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3 933 317 369 23 40 chr5 45700343 45700518 -106836741 + MLT1F2 LTR MaLR 203 374 0 3 933 614 261 181 34 chr5 45701021 45701348 -106835911 - MTD LTR MaLR -32 387 6 3 933 758 28 0 35 chr5 45701382 45701495 -106835764 + (TTTC)n Simple_repeat Simple_repeat 4 112 0 3 933 1122 125 0 0 chr5 45701499 45701675 -106835584 + (TTC)n Simple_repeat Simple_repeat 3 178 0 3 933 6261 96 10 13 chr5 45701772 45703512 -106833747 + L1VL2 LINE L1 96 1826 -1789 3 933 340 292 0 0 chr5 45703656 45703745 -106833514 - PB1D10 SINE Alu -2 115 27 3 933 450 0 0 0 chr5 45704090 45704140 -106833119 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 933 34 0 0 0 chr5 45704646 45704680 -106832579 + AT_rich Low_complexity Low_complexity 1 34 0 3 933 244 193 132 0 chr5 45704797 45704880 -106832379 + L1M2 LINE L1 2745 2838 -3305 3 933 202 388 92 41 chr5 45704966 45705184 -106832075 + L2a LINE L2 2423 2651 -768 3 933 598 303 20 0 chr5 45705259 45705411 -106831848 + MTD LTR MaLR 35 189 -230 3 933 528 209 36 42 chr5 45705430 45705572 -106831687 + MTD LTR MaLR 240 381 -38 3 933 315 0 0 0 chr5 45705672 45705707 -106831552 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 933 231 189 0 0 chr5 45705707 45705760 -106831499 + (CATA)n Simple_repeat Simple_repeat 2 54 0 3 933 294 339 141 48 chr5 45705993 45706368 -106830891 + L2a LINE L2 3017 3426 0 3 933 725 221 112 8 chr5 45706589 45706772 -106830487 + B3A SINE B2 5 204 -12 3 933 225 0 0 0 chr5 45706862 45706887 -106830372 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 933 460 273 77 30 chr5 45707926 45708091 -106829168 + MLT1F2 LTR MaLR 17 189 -380 3 933 301 329 84 112 chr5 45708079 45708329 -106828930 + MLT1F2 LTR MaLR 309 551 -103 3 933 423 269 0 16 chr5 45708344 45708465 -106828794 + LTR82A LTR ERVL 263 381 -491 3 933 228 253 100 114 chr5 45708484 45708694 -106828565 - MLT1B LTR MaLR -20 370 164 3 933 390 21 0 0 chr5 45708895 45708942 -106828317 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3 933 530 347 97 7 chr5 45708944 45709234 -106828025 + LTR82A LTR ERVL 424 739 -133 3 933 371 206 0 0 chr5 45709543 45709606 -106827653 + MTEb LTR MaLR 1 63 -316 3 933 433 253 113 60 chr5 45709601 45709769 -106827490 + MTEb LTR MaLR 201 377 -2 3 933 1045 255 100 7 chr5 45710146 45710415 -106826844 - ORR1E LTR MaLR -65 294 1 3 933 389 312 107 20 chr5 45710525 45710721 -106826538 - MER20 DNA MER1_type -1 218 6 3 933 316 286 229 9 chr5 45710936 45711169 -106826090 + MER2 DNA MER2_type 1 283 -62 3 933 242 368 38 0 chr5 45711722 45711828 -106825431 + B1_Mm SINE Alu 10 119 -28 3 933 849 136 18 6 chr5 45711854 45712017 -106825242 + GA-rich Low_complexity Low_complexity 4 168 0 3 933 914 214 9 87 chr5 45712025 45712255 -106825004 + B3 SINE B2 4 215 -1 3 933 317 280 60 0 chr5 45712420 45712520 -106824739 + PB1D7 SINE Alu 10 115 -5 3 933 209 188 41 20 chr5 45712521 45712570 -106824689 + GA-rich Low_complexity Low_complexity 6 55 0 3 933 241 348 92 18 chr5 45712731 45712895 -106824364 - MIRb SINE MIR -7 261 86 3 933 352 328 42 56 chr5 45713815 45713957 -106823302 - MER63B DNA AcHobo 0 436 297 3 933 588 239 29 36 chr5 45714224 45714363 -106822896 + RSINE1 SINE B4 12 149 -16 3 933 189 0 0 0 chr5 45714363 45714384 -106822875 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 933 331 306 91 65 chr5 45714723 45714922 -106822337 + MLT1F2 LTR MaLR 103 306 -254 3 933 322 280 118 22 chr5 45714978 45715113 -106822146 - MLT1E1A LTR MaLR -249 431 284 3 933 9756 113 8 11 chr5 45715201 45717556 -106819703 + L1_Mus4 LINE L1 4292 6636 0 3 933 1071 213 116 0 chr5 45718276 45718482 -106818777 + B4A SINE B4 2 232 -60 3 933 936 215 75 5 chr5 45718482 45718683 -106818576 + B3 SINE B2 2 216 0 3 933 432 105 0 0 chr5 45718727 45718803 -106818456 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 933 243 255 0 0 chr5 45718803 45718854 -106818405 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 933 1720 31 5 0 chr5 45719064 45719255 -106818004 - B2_Mm1t SINE B2 0 193 2 3 933 22 56 0 0 chr5 45719320 45719356 -106817903 + AT_rich Low_complexity Low_complexity 1 36 0 3 933 274 315 0 14 chr5 45719647 45719721 -106817538 - Tigger5 DNA MER2_type 0 2406 2334 3 933 677 265 98 36 chr5 45719727 45719887 -106817372 + L1MA4A LINE L1 5617 5793 -510 3 933 231 103 0 0 chr5 45719887 45719926 -106817333 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 3 933 677 277 99 33 chr5 45719926 45720134 -106817125 + L1MA4A LINE L1 5794 6020 -280 3 933 800 251 191 17 chr5 45720506 45720741 -106816518 - MTEb LTR MaLR -100 279 4 3 933 3453 256 218 32 chr5 45720745 45720920 -106816339 - MTEb-int LTR MaLR -2 1578 1344 3 933 904 259 69 15 chr5 45720920 45721124 -106816135 + ID_B1 SINE B4 1 215 -9 3 933 3453 256 218 32 chr5 45721124 45721992 -106815267 - MTEb-int LTR MaLR -237 1343 294 3 933 3045 43 0 9 chr5 45721992 45722341 -106814918 - ORR1A1 LTR MaLR 0 346 1 3 933 2256 256 51 26 chr5 45722341 45722605 -106814654 - MTEb-int LTR MaLR -1287 293 27 3 933 405 279 96 0 chr5 45722661 45722841 -106814418 - MTEa LTR MaLR -123 256 1 3 933 200 244 0 0 chr5 45722900 45722941 -106814318 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 933 4441 158 51 19 chr5 45723464 45724206 -106813053 + Lx4B LINE L1 6286 7051 -7 3 933 212 329 46 46 chr5 45724276 45724429 -106812830 + MIR SINE MIR 12 164 -98 3 933 227 269 75 0 chr5 45724624 45724691 -106812568 + L2c LINE L2 3139 3210 -177 3 933 249 302 67 67 chr5 45725138 45725273 -106811986 + MER104 DNA Tc2 47 181 0 3 933 180 263 0 0 chr5 45725706 45725744 -106811515 + L3b LINE CR1 179 216 -266 3 933 324 0 0 0 chr5 45726144 45726180 -106811079 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 933 427 294 31 16 chr5 45726819 45726947 -106810312 + Lx8 LINE L1 6424 6553 -920 3 933 1409 334 36 46 chr5 45726916 45727609 -106809650 + Lx9 LINE L1 6764 7449 -195 3 933 36 23 0 0 chr5 45727717 45727760 -106809499 + AT_rich Low_complexity Low_complexity 1 43 0 3 933 183 298 152 37 chr5 45727889 45728053 -106809206 + MIR3 SINE MIR 23 205 -3 3 933 399 56 0 0 chr5 45728256 45728310 -106808949 + (A)n Simple_repeat Simple_repeat 1 54 0 3 933 1653 274 78 14 chr5 45728421 45728972 -106808287 + Lx8 LINE L1 6886 7471 -2 3 933 195 42 0 0 chr5 45728981 45729005 -106808254 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 933 594 0 0 0 chr5 45729014 45729080 -106808179 + (GAAA)n Simple_repeat Simple_repeat 2 67 0 3 933 405 0 0 0 chr5 45729242 45729287 -106807972 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 3 933 237 65 0 0 chr5 45729954 45729985 -106807274 + (A)n Simple_repeat Simple_repeat 1 31 0 3 933 334 321 29 44 chr5 45730336 45730473 -106806786 + B4A SINE B4 158 292 0 3 933 354 98 0 0 chr5 45730502 45730553 -106806706 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 933 462 143 0 0 chr5 45730619 45730696 -106806563 + (TCTCCC)n Simple_repeat Simple_repeat 4 80 0 3 933 691 257 6 32 chr5 45731820 45731977 -106805282 - RSINE1 SINE B4 -8 157 5 3 933 660 223 138 34 chr5 45733210 45733629 -106803630 - MTD LTR MaLR -14 405 33 3 933 263 272 73 12 chr5 45734081 45734163 -106803096 + ORR1E LTR MaLR 269 355 -4 3 933 2351 167 53 32 chr5 45734325 45734758 -106802501 + RMER10A LTR ERVL 1 442 0 4 933 237 318 115 23 chr5 45735751 45735925 -106801334 + MIRb SINE MIR 37 223 -39 4 933 249 98 0 0 chr5 45736051 45736092 -106801167 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 4 933 482 211 34 26 chr5 45736151 45736268 -106800991 + MLT1A1 LTR MaLR 291 408 0 4 933 449 338 89 35 chr5 45736377 45736579 -106800680 - LTR16A LTR ERVL -108 343 131 4 933 249 241 17 0 chr5 45736897 45736955 -106800304 + RMER15 LTR ERVL 2 60 -515 4 933 33636 80 14 2 chr5 45736999 45742315 -106794944 + L1Md_F2 LINE L1 213 5586 -297 4 933 7980 74 9 0 chr5 45742317 45743286 -106793973 + L1Md_F2 LINE L1 5589 6566 -16 4 933 474 18 0 0 chr5 45743297 45743352 -106793907 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 4 933 1045 261 108 54 chr5 45743453 45743822 -106793437 + RMER15 LTR ERVL 187 575 0 4 116 274 286 82 107 chr5 45743944 45744187 -106793072 + MLT1B LTR MaLR 3 239 -151 4 934 492 321 14 0 chr5 45744304 45744444 -106792815 + MLT1B LTR MaLR 245 386 -4 4 934 298 172 52 0 chr5 45744609 45744667 -106792592 - ORR1E LTR MaLR 0 379 319 4 934 890 310 92 44 chr5 45744667 45744832 -106792427 - RMER5 LTR ERV1 0 534 369 4 934 687 24 0 0 chr5 45744832 45744915 -106792344 - L1Md_T LINE L1 -2 6580 6498 4 934 890 310 92 44 chr5 45744915 45745249 -106792010 - RMER5 LTR ERV1 -166 368 11 4 934 583 259 143 30 chr5 45745251 45745557 -106791702 - ORR1E LTR MaLR -37 357 2 4 934 334 364 41 5 chr5 45747816 45748023 -106789236 + MIR SINE MIR 6 216 -46 4 934 815 297 75 82 chr5 45749490 45749904 -106787355 - MER47B DNA MER2_type -6 412 2 4 934 475 271 0 0 chr5 45749974 45750070 -106787189 + PB1D7 SINE Alu 25 120 0 4 934 222 62 0 0 chr5 45750198 45750230 -106787029 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 934 1071 238 9 14 chr5 45750353 45750566 -106786693 + ID_B1 SINE B4 9 220 -4 4 934 241 296 49 49 chr5 45750444 45750586 -106786673 - YREP_Mm Unknown Unknown -1516 296 155 4 934 1345 183 0 30 chr5 45750678 45750909 -106786350 - URR1B DNA MER1_type -1 224 1 4 934 243 236 70 70 chr5 45751046 45751160 -106786099 + LTR79 LTR ERVL 67 180 -347 4 934 278 228 20 71 chr5 45751341 45751440 -106785819 - L1MB2 LINE L1 -4 6167 6074 4 934 624 193 60 101 chr5 45751762 45752010 -106785249 - L1MB3 LINE L1 -78 6105 5868 4 934 440 287 59 0 chr5 45752353 45752489 -106784770 - MLT1D LTR MaLR -7 498 355 4 934 368 318 15 36 chr5 45752605 45752742 -106784517 - MLT1D LTR MaLR -371 134 1 4 934 8277 106 8 50 chr5 45752863 45755000 -106782259 + L1VL4 LINE L1 42 2090 -1469 4 934 7623 93 14 11 chr5 45754999 45756316 -106780943 + L1_Mus4 LINE L1 5314 6636 0 4 934 268 300 44 35 chr5 45756742 45756856 -106780403 - ORR1E LTR MaLR -237 122 8 4 934 23 0 0 0 chr5 45757329 45757352 -106779907 + AT_rich Low_complexity Low_complexity 1 23 0 4 934 335 372 62 21 chr5 45757753 45757945 -106779314 - MIRb SINE MIR -19 249 50 4 934 1787 143 181 20 chr5 45758738 45759137 -106778122 + L1_Mur2 LINE L1 508 970 -5742 4 934 337 256 180 55 chr5 45759139 45759267 -106777992 + B3 SINE B2 50 193 -23 4 934 952 271 192 39 chr5 45759674 45760112 -106777147 - LTR86C LTR ERVL -58 563 59 4 934 1648 21 5 0 chr5 45760112 45760302 -106776957 - L1Md_F2 LINE L1 -573 6009 5819 4 934 5208 36 0 8 chr5 45760302 45760893 -106776366 + L1Md_F2 LINE L1 5997 6582 0 4 934 2640 123 60 31 chr5 45761147 45761565 -106775694 + RLTR23 LTR ERV1 1 430 0 4 934 279 209 10 131 chr5 45761729 45761828 -106775431 + MLT1I LTR MaLR 325 411 0 4 934 211 226 0 54 chr5 45761899 45761955 -106775304 + L2a LINE L2 3374 3426 0 4 934 243 0 0 0 chr5 45762208 45762235 -106775024 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4 934 1054 68 0 0 chr5 45762235 45762368 -106774891 - B1_Mus1 SINE Alu -10 138 6 4 934 454 200 14 120 chr5 45762260 45762402 -106774857 - MT2B LTR ERVL -337 264 138 4 934 827 293 106 16 chr5 45763783 45764462 -106772797 + L1MB4 LINE L1 4974 5724 -454 4 934 280 253 66 13 chr5 45764462 45764538 -106772721 + ID4_ SINE ID 4 83 0 4 934 539 292 166 23 chr5 45764538 45764624 -106772635 + L1MB4 LINE L1 5725 5830 -353 4 934 266 308 13 0 chr5 45764627 45764705 -106772554 + B1F2 SINE Alu 7 85 -64 4 934 808 231 131 27 chr5 45764723 45765052 -106772207 + L1MB4 LINE L1 5818 6180 0 4 934 901 308 34 66 chr5 45765214 45765686 -106771573 + L1MC4 LINE L1 6460 6916 -1126 4 934 274 342 35 56 chr5 45765848 45766080 -106771179 + L1MC4 LINE L1 7230 7456 -426 4 934 855 273 45 16 chr5 45766087 45766333 -106770926 - MTD LTR MaLR -166 253 1 4 934 2150 149 53 22 chr5 45767147 45767299 -106769960 + ORR1B2 LTR MaLR 1 146 -221 4 934 567 0 0 0 chr5 45767299 45767362 -106769897 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 934 2150 149 53 22 chr5 45767362 45767565 -106769694 + ORR1B2 LTR MaLR 147 367 0 4 934 7440 75 2 1 chr5 45768016 45769561 -106767698 - L1_Mus2 LINE L1 -38 6528 4982 4 934 1455 262 95 8 chr5 45770586 45771060 -106766199 + RMER5 LTR ERV1 20 534 0 4 934 240 279 161 11 chr5 45772437 45772618 -106764641 + MIRc SINE MIR 14 229 -39 4 934 203 167 0 67 chr5 45773150 45773195 -106764064 + MIRb SINE MIR 139 180 -88 4 934 830 218 7 0 chr5 45773216 45773363 -106763896 + B1_Mur1 SINE Alu 2 149 0 4 934 1072 240 64 39 chr5 45773417 45773436 -106763823 - B4 SINE B4 -2 290 272 4 934 405 0 0 0 chr5 45773436 45773481 -106763778 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 934 384 22 0 0 chr5 45773481 45773525 -106763734 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 934 1072 240 64 39 chr5 45773525 45773786 -106763473 - B4 SINE B4 -21 271 3 4 934 2985 115 36 2 chr5 45775587 45776031 -106761228 + RMER6B LTR ERVK 1 459 -2 4 934 394 315 35 0 chr5 45776723 45776866 -106760393 + MER3 DNA MER1_type 5 152 -57 4 934 264 312 82 107 chr5 45777094 45777216 -106760043 + MER2 DNA MER2_type 1 119 -226 4 934 770 292 12 97 chr5 45777267 45777586 -106759673 - B4A SINE B4 0 292 1 4 934 729 282 37 5 chr5 45777593 45777807 -106759452 + MER2 DNA MER2_type 107 327 -18 4 934 222 241 35 46 chr5 45778017 45778104 -106759155 - MIRb SINE MIR -52 216 131 4 934 180 0 0 0 chr5 45778345 45778365 -106758894 + (CCCCCA)n Simple_repeat Simple_repeat 4 23 0 4 934 461 285 205 54 chr5 45778376 45778858 -106758401 + L1MEc LINE L1 298 852 -5548 4 934 258 189 19 0 chr5 45778874 45778927 -106758332 - MTD LTR MaLR -14 405 352 4 934 669 313 49 15 chr5 45779270 45779533 -106757726 + B4A SINE B4 1 272 -20 4 934 339 44 0 0 chr5 45779550 45779595 -106757664 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 934 420 276 38 0 chr5 45779717 45779822 -106757437 - B1_Mur1 SINE Alu -9 140 32 4 934 324 305 38 8 chr5 45779853 45779985 -106757274 + MIR SINE MIR 3 138 -124 4 934 244 303 0 33 chr5 45781085 45781177 -106756082 - BLACKJACK DNA AcHobo -76 2868 2780 4 934 1818 87 42 0 chr5 45781197 45781461 -106755798 - Lx3C LINE L1 -2 6974 6700 4 934 685 289 61 32 chr5 45781593 45781872 -106755387 + B4A SINE B4 6 292 0 4 934 188 143 42 14 chr5 45781923 45781994 -106755265 + (TAA)n Simple_repeat Simple_repeat 3 75 0 4 934 3102 83 2 12 chr5 45782013 45782438 -106754821 - BGLII LTR ERVK 0 421 1 4 934 393 75 0 0 chr5 45782449 45782502 -106754757 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 934 736 272 50 35 chr5 45782502 45782518 -106754741 - B3 SINE B2 -13 203 189 4 934 558 43 0 0 chr5 45782518 45782587 -106754672 + (TG)n Simple_repeat Simple_repeat 2 70 0 4 934 736 272 50 35 chr5 45782587 45782768 -106754491 - B3 SINE B2 -28 188 3 4 934 339 259 0 0 chr5 45783062 45783143 -106754116 + ID4 SINE ID 2 82 -1 4 934 968 200 26 5 chr5 45783217 45783408 -106753851 + B3A SINE B2 2 196 -2 4 934 974 50 0 0 chr5 45783408 45783529 -106753730 + L1_Mm LINE L1 5240 5360 -523 4 934 3860 58 0 10 chr5 45783534 45784024 -106753235 + L1Md_F2 LINE L1 6098 6582 0 4 934 272 214 123 31 chr5 45784049 45784179 -106753080 - BLACKJACK DNA AcHobo -1552 1392 1251 4 934 723 196 14 7 chr5 45784371 45784510 -106752749 - B1_Mur1 SINE Alu -8 141 2 4 934 364 166 50 7 chr5 45784645 45784785 -106752474 + (TA)n Simple_repeat Simple_repeat 2 147 0 4 934 279 79 0 0 chr5 45785220 45785258 -106752001 + (TGG)n Simple_repeat Simple_repeat 1 38 0 4 934 434 330 113 0 chr5 45785902 45786087 -106751172 + MLT1I LTR MaLR 157 362 -49 4 934 508 314 107 5 chr5 45786120 45786344 -106750915 + Charlie1a DNA MER1_type 2 248 -1207 4 934 1929 60 31 19 chr5 45786409 45786665 -106750594 - L1_Mus1 LINE L1 0 6567 6309 4 934 3010 17 42 6 chr5 45786665 45787019 -106750240 + IAPLTR1_Mm LTR ERVK 1 367 0 4 934 25422 31 36 4 chr5 45787019 45789994 -106747265 + IAPEz-int LTR ERVK 8 3076 -3405 4 934 7510 26 3 0 chr5 45789980 45790829 -106746430 + IAPEz-int LTR ERVK 5630 6481 0 4 934 3010 17 42 6 chr5 45790829 45791183 -106746076 + IAPLTR1_Mm LTR ERVK 1 367 0 4 934 3324 66 0 0 chr5 45791183 45791594 -106745665 - L1Md_F2 LINE L1 -261 6321 5911 4 934 1111 79 1 0 chr5 45791648 45791804 -106745455 + B2_Mm2 SINE B2 1 157 -36 4 934 1074 98 0 0 chr5 45791804 45792061 -106745198 + (TAGA)n Simple_repeat Simple_repeat 1 257 0 4 934 924 148 37 32 chr5 45792061 45792090 -106745169 + B2_Mm1t SINE B2 158 189 -4 4 934 682 293 121 8 chr5 45792136 45792554 -106744705 + Charlie1a DNA MER1_type 409 907 -548 4 934 577 194 107 45 chr5 45792628 45792806 -106744453 - B2_Mm2 SINE B2 -5 190 2 4 934 742 285 150 25 chr5 45793221 45793660 -106743599 + Charlie1a DNA MER1_type 961 1454 -1 4 934 643 307 64 52 chr5 45793674 45794004 -106743255 - LTR41B LTR ERVL 0 758 425 4 934 441 233 139 0 chr5 45794072 45794201 -106743058 - LTR41B LTR ERVL -597 161 15 4 934 265 297 33 0 chr5 45794875 45794966 -106742293 + L2c LINE L2 3256 3349 -38 4 934 486 0 0 0 chr5 45795488 45795542 -106741717 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 934 180 0 0 0 chr5 45796095 45796115 -106741144 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4 934 294 29 0 0 chr5 45796207 45796242 -106741017 + (TTCTC)n Simple_repeat Simple_repeat 4 38 0 4 934 212 275 41 55 chr5 45797365 45797438 -106739821 - MIRb SINE MIR -90 178 107 4 934 21 36 0 0 chr5 45797844 45797872 -106739387 + AT_rich Low_complexity Low_complexity 1 28 0 4 934 551 170 10 10 chr5 45798048 45798149 -106739110 + B1_Mur1 SINE Alu 9 109 -40 4 934 840 152 0 0 chr5 45798151 45798302 -106738957 + GA-rich Low_complexity Low_complexity 2 152 0 4 934 615 310 99 26 chr5 45798729 45799176 -106738083 + MLT2B4 LTR ERVL 1 551 -3 4 934 1335 197 130 36 chr5 45799237 45799707 -106737552 + RLTR20C LTR ERVK 4 541 0 4 934 39600 36 1 0 chr5 45799743 45805153 -106732106 - L1Md_T LINE L1 -1 6581 1170 4 934 5776 150 34 40 chr5 45805159 45806273 -106730986 - L1Md_T LINE L1 -5411 1205 99 4 934 389 327 105 25 chr5 45807470 45807746 -106729513 - MTEa LTR MaLR -6 373 76 5 934 471 281 7 0 chr5 45808143 45808278 -106728981 - MTE-int LTR MaLR -5 1575 1440 5 934 595 335 75 35 chr5 45808328 45808674 -106728585 + MLT1A0 LTR MaLR 1 360 -5 5 934 180 246 18 0 chr5 45809293 45809350 -106727909 - MIR SINE MIR -124 138 81 5 934 566 248 45 13 chr5 45810507 45810662 -106726597 - B3A SINE B2 -38 160 1 5 934 4352 153 206 8 chr5 45810675 45811533 -106725726 - RMER1A Other Other 0 1030 3 5 934 1105 228 121 102 chr5 45811536 45812060 -106725199 - RMER1B Other Other -569 497 1 5 934 271 137 118 0 chr5 45812465 45812516 -106724743 - MER103 DNA DNA -46 120 64 5 934 243 233 0 48 chr5 45812528 45812654 -106724605 + (CATA)n Simple_repeat Simple_repeat 2 121 0 5 934 627 128 45 15 chr5 45812700 45812902 -106724357 + (TAGA)n Simple_repeat Simple_repeat 1 208 0 5 934 1118 261 118 51 chr5 45813010 45813519 -106723740 + MER67A LTR ERV1 1 543 0 5 934 242 260 0 0 chr5 45814534 45814584 -106722675 + G-rich Low_complexity Low_complexity 4 53 0 5 934 219 125 0 0 chr5 45815035 45815067 -106722192 + MIR SINE MIR 221 252 -10 5 934 906 152 135 0 chr5 45815279 45815457 -106721802 - URR1A DNA MER1_type -23 203 2 5 934 195 42 0 0 chr5 45815759 45815783 -106721476 + (TTTTC)n Simple_repeat Simple_repeat 4 27 0 5 934 6776 78 21 8 chr5 45815784 45816688 -106720571 - Lx LINE L1 -1 6653 5738 5 934 2860 174 71 100 chr5 45816692 45817578 -106719681 - RLTR13D6 LTR ERVK -38 940 1 5 934 207 226 215 0 chr5 45817827 45817920 -106719339 + MIRb SINE MIR 86 198 -70 5 934 340 236 113 0 chr5 45818526 45818632 -106718627 + MIR SINE MIR 107 224 -38 5 934 733 251 18 41 chr5 45818901 45819121 -106718138 + B3 SINE B2 1 215 -1 5 934 2386 149 81 12 chr5 45819125 45819532 -106717727 + RMER1A Other Other 434 868 -162 5 934 288 0 0 0 chr5 45819532 45819564 -106717695 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 934 2250 203 138 16 chr5 45819564 45819662 -106717597 + RMER1B Other Other 951 1062 -4 5 934 460 248 121 0 chr5 45820439 45820588 -106716671 + L1M4 LINE L1 5651 5817 -361 5 934 2000 50 0 0 chr5 45820597 45820838 -106716421 + L1_Mus1 LINE L1 6327 6567 0 5 934 384 268 101 0 chr5 45820857 45821036 -106716223 + L1M2 LINE L1 2979 3175 -2968 5 934 546 57 0 0 chr5 45821186 45821256 -106716003 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 934 228 308 97 21 chr5 45821265 45821358 -106715901 - RMER20A LTR ERVK 0 516 417 5 934 337 161 32 0 chr5 45821581 45821643 -106715616 - RMER20B LTR ERVK -563 64 1 5 934 373 265 10 19 chr5 45821836 45821940 -106715319 + ID_B1 SINE B4 40 142 -82 5 934 261 289 0 0 chr5 45821998 45822050 -106715209 + B4 SINE B4 241 292 0 5 934 242 73 24 0 chr5 45822104 45822145 -106715114 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 934 623 217 151 28 chr5 45822926 45823144 -106714115 + RMER4B LTR ERVK 6 250 -335 5 934 1059 36 0 0 chr5 45823195 45823333 -106713926 + B1_Mus2 SINE Alu 10 147 0 5 934 358 277 188 24 chr5 45823349 45823519 -106713740 + RMER4B LTR ERVK 359 556 -29 5 934 227 114 0 0 chr5 45823608 45823643 -106713616 - MTB-int LTR MaLR -1063 35 1 5 934 2931 71 50 3 chr5 45823643 45824025 -106713234 - MTB LTR MaLR 0 400 1 5 934 885 146 249 0 chr5 45824140 45824305 -106712954 - B3 SINE B2 -10 206 1 5 934 41 21 0 0 chr5 45824312 45824360 -106712899 + AT_rich Low_complexity Low_complexity 1 48 0 5 934 614 269 140 26 chr5 45824469 45824854 -106712405 + L1MB5 LINE L1 5688 6116 -58 5 934 228 258 76 0 chr5 45824987 45825053 -106712206 + MIR3 SINE MIR 106 176 -32 5 934 293 348 25 56 chr5 45826282 45826480 -106710779 - MER2 DNA MER2_type -75 270 79 5 934 183 80 0 0 chr5 45826565 45826590 -106710669 + (A)n Simple_repeat Simple_repeat 1 25 0 5 934 180 0 0 0 chr5 45826751 45826771 -106710488 + (A)n Simple_repeat Simple_repeat 1 20 0 5 934 599 304 36 55 chr5 45827705 45827924 -106709335 + B4A SINE B4 16 230 -62 5 934 589 211 14 110 chr5 45827925 45828143 -106709116 + B3A SINE B2 2 198 0 5 934 420 20 0 0 chr5 45828218 45828267 -106708992 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 934 828 281 103 18 chr5 45830073 45830403 -106706856 + MLT1A0 LTR MaLR 1 358 -7 5 934 303 49 0 0 chr5 45830895 45830936 -106706323 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 5 934 1114 72 0 0 chr5 45830936 45831074 -106706185 - B1_Mm SINE Alu -9 138 1 5 934 413 261 104 7 chr5 45831077 45831212 -106706047 - B1F2 SINE Alu -1 148 1 5 934 225 0 0 0 chr5 45831247 45831272 -106705987 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 5 934 549 80 0 0 chr5 45831273 45831348 -106705911 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 934 642 275 13 7 chr5 45831358 45831508 -106705751 - RSINE1 SINE B4 -12 153 3 5 934 679 100 0 0 chr5 45833370 45833470 -106703789 + B2_Mm2 SINE B2 4 103 -92 5 934 24 0 0 0 chr5 45833470 45833494 -106703765 + AT_rich Low_complexity Low_complexity 1 24 0 5 934 28 0 0 0 chr5 45833513 45833541 -106703718 + AT_rich Low_complexity Low_complexity 1 28 0 5 934 702 234 50 20 chr5 45833636 45833837 -106703422 + MLT1B LTR MaLR 44 250 -140 5 934 234 0 0 0 chr5 45834842 45834868 -106702391 + (TA)n Simple_repeat Simple_repeat 2 27 0 5 934 317 338 27 7 chr5 45837353 45837502 -106699757 + RSINE1 SINE B4 4 155 -10 5 934 274 284 21 10 chr5 45837746 45837842 -106699417 + MIR SINE MIR 2 98 -164 5 934 323 279 120 27 chr5 45840039 45840265 -106696994 - MTD LTR MaLR -160 247 1 5 934 231 336 76 14 chr5 45840843 45840988 -106696271 - MIRc SINE MIR -69 199 46 5 934 264 218 0 143 chr5 45843497 45843588 -106693671 + Lx8 LINE L1 7386 7463 -10 5 934 569 130 41 39 chr5 45843618 45844062 -106693197 + (TAGA)n Simple_repeat Simple_repeat 1 444 0 5 934 911 94 7 0 chr5 45844083 45844232 -106693027 + (TAGA)n Simple_repeat Simple_repeat 4 153 0 5 934 273 342 40 27 chr5 45845545 45845695 -106691564 - MIRb SINE MIR -29 239 88 5 934 362 314 0 9 chr5 45846472 45846578 -106690681 + B4A SINE B4 182 286 -6 5 934 555 141 0 0 chr5 45846613 45846705 -106690554 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 934 330 232 0 6 chr5 45848401 45848482 -106688777 + MIR SINE MIR 72 150 -58 5 934 777 299 48 18 chr5 45848487 45848760 -106688499 + B4A SINE B4 10 290 -2 5 934 544 102 20 0 chr5 45848791 45848889 -106688370 + (GA)n Simple_repeat Simple_repeat 2 101 0 5 934 845 181 7 0 chr5 45850154 45850292 -106686967 + B1_Mur1 SINE Alu 2 140 -9 5 934 1578 83 4 25 chr5 45851702 45851938 -106685321 + L1Md_F2 LINE L1 6352 6582 0 5 934 23 0 0 0 chr5 45852731 45852754 -106684505 + AT_rich Low_complexity Low_complexity 1 23 0 5 934 1091 155 130 0 chr5 45853092 45853292 -106683967 + URR1A DNA MER1_type 1 226 0 5 934 350 298 9 17 chr5 45853900 45854016 -106683243 - PB1D7 SINE Alu -5 115 1 5 934 501 183 192 0 chr5 45854041 45854113 -106683146 - B1_Mur1 SINE Alu -5 144 67 5 934 297 0 0 0 chr5 45854113 45854146 -106683113 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 934 501 183 192 0 chr5 45854146 45854193 -106683066 - B1_Mur1 SINE Alu -83 66 4 5 934 1149 62 7 0 chr5 45854687 45854833 -106682426 + B1_Mus1 SINE Alu 2 148 0 5 934 269 232 90 50 chr5 45855399 45855499 -106681760 + MIRb SINE MIR 79 182 -86 5 934 194 375 16 16 chr5 45855843 45855965 -106681294 - MIR SINE MIR -36 226 105 5 934 23 0 0 0 chr5 45856017 45856040 -106681219 + AT_rich Low_complexity Low_complexity 1 23 0 5 934 405 345 77 0 chr5 45856178 45856398 -106680861 + LTR50 LTR ERVL 402 638 -157 5 934 260 276 259 13 chr5 45856754 45856912 -106680347 + MLT2D LTR ERVL 4 200 -214 5 934 270 73 0 0 chr5 45856912 45856953 -106680306 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 934 294 29 0 0 chr5 45857402 45857437 -106679822 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 934 233 262 83 0 chr5 45857655 45857739 -106679520 + MLT2D LTR ERVL 418 508 -55 5 934 596 294 54 115 chr5 45857742 45857870 -106679389 - MER2 DNA MER2_type -34 311 200 5 934 5797 81 1 3 chr5 45857870 45858629 -106678630 - L1_Mus1 LINE L1 0 6567 5810 5 934 596 294 54 115 chr5 45858629 45858831 -106678428 - MER2 DNA MER2_type -146 199 1 5 934 683 337 21 45 chr5 45859161 45859543 -106677716 - Lx8 LINE L1 -8 7465 7093 5 934 1004 231 25 30 chr5 45859638 45859874 -106677385 + MTD LTR MaLR 12 246 -173 5 934 1048 307 60 39 chr5 45859944 45860378 -106676881 - Lx8 LINE L1 -554 6919 6477 5 934 788 233 17 6 chr5 45860408 45860589 -106676670 - ORR1D2 LTR MaLR -187 183 1 5 934 287 243 0 26 chr5 45860607 45860683 -106676576 - Lx8 LINE L1 -1009 6464 6391 5 934 27 0 0 0 chr5 45860934 45860961 -106676298 + AT_rich Low_complexity Low_complexity 1 27 0 5 934 249 304 0 42 chr5 45861821 45861893 -106675366 - RMER20B LTR ERVK -22 605 537 5 934 484 274 62 47 chr5 45861893 45862104 -106675155 - RMER20B LTR ERVK -14 613 400 5 934 1465 202 35 41 chr5 45862104 45862471 -106674788 + Lx2B LINE L1 6635 6999 -1 5 934 761 156 94 23 chr5 45862483 45862654 -106674605 - RMER20B LTR ERVK -215 412 230 5 934 318 214 196 39 chr5 45862639 45862741 -106674518 - RMER20B LTR ERVK -500 127 10 5 934 474 214 150 0 chr5 45863015 45863155 -106674104 - L1MC4 LINE L1 -128 7914 7754 5 934 353 347 24 0 chr5 45863613 45863737 -106673522 + B3A SINE B2 45 171 -27 5 934 260 298 62 28 chr5 45863867 45864012 -106673247 - L1MB8 LINE L1 -218 5960 5811 5 934 208 179 0 0 chr5 45864874 45864913 -106672346 - L2c LINE L2 -40 3347 3309 5 934 868 65 0 16 chr5 45866373 45866499 -106670760 + (GGGGA)n Simple_repeat Simple_repeat 1 124 0 5 934 315 0 0 0 chr5 45866555 45866590 -106670669 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 934 210 179 0 25 chr5 45866733 45866773 -106670486 + (CAG)n Simple_repeat Simple_repeat 1 39 0 5 934 188 185 74 0 chr5 45866795 45866849 -106670410 + MER5A DNA MER1_type 50 107 -82 5 934 208 364 84 62 chr5 45868387 45868662 -106668597 - L2c LINE L2 -173 3253 2973 5 934 840 281 0 0 chr5 45869293 45869485 -106667774 + ID_B1 SINE B4 2 193 -31 6 934 398 292 60 23 chr5 45870066 45870199 -106667060 + ORR1E LTR MaLR 1 138 -221 6 934 213 308 25 13 chr5 45870449 45870528 -106666731 + L2a LINE L2 3326 3405 -21 6 934 1644 274 62 30 chr5 45870720 45871289 -106665970 - Lx8 LINE L1 -157 7316 6730 6 934 922 214 88 49 chr5 45871289 45871646 -106665613 + RLTR20C LTR ERVK 1 492 -86 6 934 234 0 0 0 chr5 45871646 45871672 -106665587 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 934 482 225 95 34 chr5 45871672 45871760 -106665499 + RLTR20C LTR ERVK 493 577 -1 6 934 391 259 150 29 chr5 45871914 45872138 -106665121 - B4A SINE B4 -22 270 6 6 934 271 280 58 17 chr5 45872576 45872696 -106664563 + HAL1 LINE L1 809 933 -1574 6 934 23 0 0 0 chr5 45872776 45872799 -106664460 + AT_rich Low_complexity Low_complexity 1 23 0 6 934 315 211 0 100 chr5 45873623 45873723 -106663536 - RMER30 DNA MER1_type -1 201 112 6 934 225 333 50 50 chr5 45874419 45874580 -106662679 - MLT1J LTR MaLR -115 397 237 6 934 280 200 0 23 chr5 45874636 45874723 -106662536 + CT-rich Low_complexity Low_complexity 4 88 0 6 116 436 260 156 91 chr5 45874888 45875305 -106661954 - RLTR33 LTR ERVK 0 499 11 6 935 203 0 37 0 chr5 45876065 45876092 -106661167 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 6 935 1487 242 28 9 chr5 45876198 45876523 -106660736 - Lx6 LINE L1 -12 7448 7118 6 935 221 232 24 12 chr5 45876526 45876609 -106660650 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 6 935 270 0 0 0 chr5 45876613 45876643 -106660616 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 935 2485 110 26 46 chr5 45876649 45877106 -106660153 + RMER4A LTR ERVK 18 465 -1 6 935 10422 196 86 16 chr5 45877136 45878770 -106658489 - Lx6 LINE L1 -327 7133 5369 6 935 2110 139 32 75 chr5 45878770 45879181 -106658078 - ORR1B1 LTR MaLR -1 393 1 6 935 10422 168 30 16 chr5 45879181 45880609 -106656650 - Lx6 LINE L1 -512 5368 3905 6 935 2299 155 29 16 chr5 45880609 45881280 -106655979 - Lx6 LINE L1 -4347 1533 857 6 935 861 288 92 12 chr5 45881272 45881599 -106655660 - Lx6 LINE L1 -7167 561 209 6 935 348 24 0 0 chr5 45881599 45881640 -106655619 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 6 935 734 32 11 0 chr5 45881640 45881732 -106655527 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 6 935 434 62 31 0 chr5 45881732 45881797 -106655462 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 6 935 244 257 0 0 chr5 45881815 45881885 -106655374 - Lx6 LINE L1 -7507 221 152 6 935 231 279 0 14 chr5 45881897 45881966 -106655293 - ID2 SINE ID -14 69 2 6 935 615 212 41 0 chr5 45882354 45882500 -106654759 + RLTR40 LTR ERVK 1 152 -665 6 935 1007 213 112 93 chr5 45882550 45882917 -106654342 + RLTR40 LTR ERVK 434 807 -10 6 935 429 20 0 0 chr5 45883338 45883388 -106653871 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 935 233 327 120 96 chr5 45883537 45883838 -106653421 - ORR1E LTR MaLR -1 358 51 6 935 369 272 186 27 chr5 45883989 45884407 -106652852 + MER34A1 LTR ERV1 1 492 -50 6 935 584 184 31 39 chr5 45886571 45886701 -106650558 - B1_Mur2 SINE Alu -8 141 13 6 935 204 40 0 0 chr5 45887649 45887674 -106649585 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 6 935 531 244 15 37 chr5 45887805 45887941 -106649318 - B1F SINE Alu -16 133 1 6 935 1371 90 27 0 chr5 45890500 45890688 -106646571 - B2_Mm2 SINE B2 0 195 3 6 935 380 336 38 101 chr5 45890691 45890850 -106646409 - PB1D10 SINE Alu 0 150 1 6 935 267 31 0 0 chr5 45891235 45891267 -106645992 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 935 794 171 0 0 chr5 45891305 45891434 -106645825 - B1_Mur3 SINE Alu 0 149 21 6 935 1902 193 85 13 chr5 45891861 45892250 -106645009 + MTD LTR MaLR 3 419 0 6 935 928 261 19 0 chr5 45892520 45892731 -106644528 - B3 SINE B2 -1 215 1 6 935 227 287 38 47 chr5 45894373 45894479 -106642780 - ID_B1 SINE B4 -103 121 17 6 935 294 210 32 0 chr5 45894422 45894484 -106642775 - tRNA-Ala-GCY_ tRNA tRNA -7 68 5 6 935 315 0 0 0 chr5 45895275 45895310 -106641949 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 6 935 421 243 48 19 chr5 45895602 45895707 -106641552 - PB1D10 SINE Alu -1 116 9 6 935 421 323 15 46 chr5 45895756 45895886 -106641373 - RSINE1 SINE B4 -29 136 11 6 935 684 193 129 39 chr5 45896864 45897042 -106640217 - B3A SINE B2 -4 194 1 6 935 459 280 104 0 chr5 45898639 45898764 -106638495 - RSINE1 SINE B4 -25 140 3 6 935 1251 54 0 0 chr5 45899846 45899994 -106637265 + B1_Mus1 SINE Alu 1 148 0 6 935 378 61 0 0 chr5 45899994 45900043 -106637216 + (A)n Simple_repeat Simple_repeat 1 49 0 6 935 197 213 131 0 chr5 45900338 45900399 -106636860 - L2b LINE L2 -7 3368 3300 6 935 915 159 7 0 chr5 45903592 45903737 -106633522 + B1_Mus2 SINE Alu 2 147 0 6 935 481 242 98 26 chr5 45904884 45905037 -106632222 - B3A SINE B2 -29 166 3 6 935 525 346 78 62 chr5 45905880 45906400 -106630859 - MuRRS-int LTR ERV1 -4553 3003 2512 6 935 1232 61 0 0 chr5 45906400 45906547 -106630712 - B1_Mus1 SINE Alu -1 147 1 6 935 551 322 65 52 chr5 45906547 45906986 -106630273 - MuRRS-int LTR ERV1 -5045 2511 1816 6 935 751 346 93 41 chr5 45907136 45907747 -106629512 - RLTR6-int LTR ERV1 -5844 1934 1292 6 935 242 186 0 0 chr5 45908163 45908206 -106629053 - RLTR23 LTR ERV1 -380 50 8 6 935 461 274 57 0 chr5 45908228 45908334 -106628925 + PB1D7 SINE Alu 7 118 -2 6 935 723 211 51 0 chr5 45908384 45908540 -106628719 + L1MD1 LINE L1 5679 5842 -400 6 935 519 268 34 162 chr5 45908556 45908971 -106628288 - RLTR20A1 LTR ERVK -71 507 3 6 935 285 196 0 0 chr5 45908946 45908992 -106628267 + RLTR23 LTR ERV1 45 90 -340 6 935 3910 108 107 57 chr5 45909145 45909864 -106627395 - RMER6A LTR ERVK -1 755 1 6 935 2360 157 98 2 chr5 45910483 45910931 -106626328 + RLTR28 LTR ERVL 1 491 -33 6 935 22 0 0 0 chr5 45911609 45911631 -106625628 + GC_rich Low_complexity Low_complexity 1 22 0 6 935 264 253 127 0 chr5 45912241 45912320 -106624939 - RSINE1 SINE B4 -74 91 3 6 935 225 0 0 0 chr5 45912482 45912507 -106624752 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 935 631 189 63 0 chr5 45912507 45912634 -106624625 - B1_Mus1 SINE Alu -13 135 1 6 935 21 0 0 0 chr5 45912695 45912716 -106624543 + GC_rich Low_complexity Low_complexity 1 21 0 6 935 864 146 0 21 chr5 45914071 45914211 -106623048 - B1_Mur4 SINE Alu -1 149 13 6 935 422 291 13 72 chr5 45914076 45914228 -106623031 - ID_B1 SINE B4 -6 218 76 6 935 297 324 75 47 chr5 45914526 45914740 -106622519 - RMER12 LTR ERVK -462 860 641 6 935 608 202 35 17 chr5 45915159 45915275 -106621984 + B1_Mur2 SINE Alu 1 118 -31 6 935 252 0 0 0 chr5 45915275 45915303 -106621956 + (T)n Simple_repeat Simple_repeat 1 28 0 6 935 366 74 327 27 chr5 45915720 45915830 -106621429 - B2_Mm2 SINE B2 -6 189 47 6 935 1195 116 35 0 chr5 45915877 45916049 -106621210 - B2_Mm1t SINE B2 -14 179 2 6 935 222 208 0 0 chr5 45916113 45916161 -106621098 + CT-rich Low_complexity Low_complexity 2 49 0 6 935 457 223 16 74 chr5 45916164 45916285 -106620974 - PB1 SINE Alu -3 124 11 6 935 319 299 13 0 chr5 45916701 45916778 -106620481 - PB1D10 SINE Alu -7 110 33 6 935 202 170 21 21 chr5 45917427 45917475 -106619784 + (TTTG)n Simple_repeat Simple_repeat 4 51 0 6 935 405 270 11 0 chr5 45917966 45918055 -106619204 + ID_B1 SINE B4 114 203 -21 6 935 386 281 101 94 chr5 45918417 45918704 -106618555 - B4A SINE B4 -3 289 1 6 935 955 229 203 4 chr5 45919540 45919821 -106617438 + MTEa LTR MaLR 6 342 -37 6 935 274 241 0 36 chr5 45920214 45920270 -106616989 - ID4_ SINE ID -11 72 19 6 935 311 250 105 0 chr5 45920308 45920384 -106616875 + MLT1A1 LTR MaLR 87 170 -195 6 935 334 172 204 51 chr5 45920689 45920787 -106616472 + B1F2 SINE Alu 34 146 -3 6 935 347 257 0 14 chr5 45920817 45920933 -106616326 + ID4 SINE ID 13 124 -28 6 935 213 175 0 0 chr5 45921560 45921600 -106615659 + (TA)n Simple_repeat Simple_repeat 1 40 0 6 935 261 284 91 41 chr5 45922249 45922312 -106614947 - MIR SINE MIR -66 196 123 6 935 3229 53 5 2 chr5 45922312 45922707 -106614552 + MTA_Mm LTR MaLR 1 396 0 6 935 261 284 91 41 chr5 45922707 45922764 -106614495 - MIR SINE MIR -140 122 71 6 935 708 231 15 0 chr5 45923350 45923484 -106613775 + B1_Mur1 SINE Alu 4 139 -10 6 935 293 272 12 0 chr5 45923509 45923590 -106613669 - ID2 SINE ID 0 83 2 6 935 227 211 0 53 chr5 45924316 45924391 -106612868 + A-rich Low_complexity Low_complexity 2 72 0 6 935 720 220 62 75 chr5 45924414 45924599 -106612660 - ID_B1 SINE B4 -52 240 58 6 935 399 164 30 0 chr5 45924593 45924660 -106612599 - B3A SINE B2 -107 91 23 6 935 618 246 94 11 chr5 45924693 45924874 -106612385 + B3A SINE B2 1 196 -2 6 935 186 143 0 0 chr5 45925970 45926005 -106611254 + (G)n Simple_repeat Simple_repeat 1 35 0 6 935 497 182 132 0 chr5 45926021 45926142 -106611117 - B1_Mur1 SINE Alu -11 138 2 6 935 408 286 0 0 chr5 45926721 45926826 -106610433 + Lx7 LINE L1 6802 6906 -790 6 935 5237 209 76 54 chr5 45926827 45928140 -106609119 + Lx7 LINE L1 6355 7696 0 6 935 1112 267 82 51 chr5 45928195 45928668 -106608591 + Lx8 LINE L1 6986 7473 0 6 935 534 211 67 8 chr5 45929876 45930010 -106607249 - B1F SINE Alu 0 149 8 6 935 296 285 55 117 chr5 45929881 45930044 -106607215 - B4A SINE B4 -69 223 71 6 935 261 0 0 0 chr5 45930304 45930333 -106606926 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 935 378 0 0 0 chr5 45930379 45930421 -106606838 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 935 325 286 61 45 chr5 45930440 45930572 -106606687 + L1M5 LINE L1 3387 3520 -2626 6 935 359 281 267 0 chr5 45932833 45932979 -106604280 - MIR SINE MIR -66 196 12 7 935 287 336 62 8 chr5 45933243 45933372 -106603887 - MIR SINE MIR -70 192 57 7 935 821 276 24 10 chr5 45933756 45933961 -106603298 - ID_B1 SINE B4 -16 208 1 7 935 241 324 0 0 chr5 45934379 45934450 -106602809 + MER87 LTR ERV1 390 460 -81 7 935 24 0 0 0 chr5 45935078 45935102 -106602157 + AT_rich Low_complexity Low_complexity 1 24 0 7 935 622 206 43 0 chr5 45935270 45935411 -106601848 + B1_Mus2 SINE Alu 1 147 0 7 935 541 256 119 0 chr5 45935901 45936061 -106601198 + B3 SINE B2 3 181 -35 7 935 198 0 0 0 chr5 45936627 45936649 -106600610 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 7 935 1085 69 0 77 chr5 45936649 45936805 -106600454 - B1_Mus1 SINE Alu -3 145 2 7 935 1041 315 87 65 chr5 45937071 45937810 -106599449 + RMER13A LTR ERVK 1 848 -12 7 935 2582 233 152 45 chr5 45937817 45938661 -106598598 + Lx9 LINE L1 6703 7636 -8 7 935 251 307 74 78 chr5 45939138 45939306 -106597953 - MIR SINE MIR -43 219 57 7 935 250 312 13 13 chr5 45939319 45939397 -106597862 - ID4_ SINE ID -3 80 3 7 935 588 29 0 0 chr5 45939779 45939849 -106597410 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 7 935 542 54 0 13 chr5 45939849 45939924 -106597335 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 7 935 2822 202 49 91 chr5 45939936 45940828 -106596431 + RLTR13A LTR ERVK 1 855 0 7 935 378 0 0 0 chr5 45940950 45940992 -106596267 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 935 1079 101 75 6 chr5 45941571 45941730 -106595529 - B2_Mm2 SINE B2 -25 170 1 7 935 244 284 39 39 chr5 45942026 45942103 -106595156 - B1F1 SINE Alu -65 84 8 7 935 256 306 113 0 chr5 45942172 45942296 -106594963 + MIRb SINE MIR 101 238 -30 7 935 1975 130 64 20 chr5 45942996 45943388 -106593871 + MYSERV16_I-int LTR ERVK 1895 2303 -23 7 935 897 262 58 29 chr5 45943426 45943701 -106593558 + RLTR20D LTR ERVK 1 283 -285 7 935 262 183 148 16 chr5 45943708 45943732 -106593527 + RLTR20D LTR ERVK 456 479 -99 7 935 525 16 0 0 chr5 45943732 45943794 -106593465 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 935 262 183 148 16 chr5 45943794 45943830 -106593429 + RLTR20D LTR ERVK 480 523 -55 7 935 489 275 93 6 chr5 45943849 45944021 -106593238 - MER2 DNA MER2_type -144 201 15 7 935 214 356 0 92 chr5 45944024 45944166 -106593093 + L2a LINE L2 3280 3408 -18 7 935 860 213 101 0 chr5 45945127 45945315 -106591944 + B3 SINE B2 6 212 -4 7 935 1069 29 15 0 chr5 45945676 45945812 -106591447 + MT2B LTR ERVL 1 138 -463 7 935 1122 87 0 6 chr5 45945808 45945970 -106591289 + MT2B LTR ERVL 441 601 0 7 935 187 217 98 16 chr5 45945975 45946036 -106591223 + MIRc SINE MIR 81 146 -122 7 935 651 92 0 0 chr5 45946105 45946214 -106591045 + (GAGAA)n Simple_repeat Simple_repeat 4 112 0 7 935 194 273 134 21 chr5 45946477 45946619 -106590640 - MIR3 SINE MIR -22 186 29 7 935 180 0 0 0 chr5 45947261 45947281 -106589978 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 935 408 294 119 25 chr5 45947819 45948021 -106589238 + L1MB1 LINE L1 5891 6111 -78 7 935 474 62 0 0 chr5 45948875 45948940 -106588319 + ORR1A0 LTR MaLR 2 66 -280 7 935 1172 21 0 0 chr5 45948940 45949085 -106588174 + ORR1A0 LTR MaLR 202 346 0 7 935 3998 72 43 18 chr5 45949085 45949753 -106587506 + ORR1A0-int LTR MaLR 1 685 -1107 7 935 236 163 0 0 chr5 45949742 45949785 -106587474 + ORR1A0-int LTR MaLR 1550 1592 -200 7 935 262 290 16 0 chr5 45949775 45949837 -106587422 + B3 SINE B2 129 191 -25 7 935 228 354 0 0 chr5 45952279 45952361 -106584898 + L1M5 LINE L1 5524 5605 -568 7 935 394 354 19 0 chr5 45952406 45952567 -106584692 - MIR SINE MIR -26 236 73 7 935 258 223 126 62 chr5 45954260 45954410 -106582849 + MIRm SINE MIR 19 185 -91 7 935 783 341 60 29 chr5 45955443 45955733 -106581526 - MLT1C LTR MaLR 0 467 170 7 935 429 177 390 81 chr5 45955733 45955816 -106581443 - URR1B DNA MER1_type 0 225 121 7 935 1228 61 0 0 chr5 45955816 45955963 -106581296 + B1_Mus1 SINE Alu 1 147 -1 7 935 429 177 390 81 chr5 45955963 45956051 -106581208 - URR1B DNA MER1_type -105 120 1 7 935 783 341 60 29 chr5 45956051 45956210 -106581049 - MLT1C LTR MaLR -298 169 4 7 935 1861 196 10 47 chr5 45957646 45957785 -106579474 + ORR1D1 LTR MaLR 4 125 -249 7 935 1308 105 15 25 chr5 45957785 45957981 -106579278 - B2_Mm2 SINE B2 -1 194 1 7 935 1861 196 10 47 chr5 45957981 45958226 -106579033 + ORR1D1 LTR MaLR 126 374 0 7 935 360 333 8 24 chr5 45959330 45959453 -106577806 - PB1 SINE Alu 0 127 7 7 935 206 211 0 0 chr5 45959871 45959909 -106577350 + (CAT)n Simple_repeat Simple_repeat 3 40 0 7 935 479 281 18 24 chr5 45960291 45960455 -106576804 + MIR SINE MIR 46 208 -54 7 935 20023 3 0 0 chr5 45960593 45962789 -106574470 - L1Md_A LINE L1 -33 5850 3655 7 935 6929 3 0 0 chr5 45962789 45963539 -106573720 + L1Md_A LINE L1 5833 6582 0 7 935 372 226 97 10 chr5 45964021 45964124 -106573135 + ORSL DNA Tip100 158 269 -6 7 935 238 269 126 67 chr5 45965186 45965409 -106571850 - L2a LINE L2 0 3426 3191 7 935 793 188 0 0 chr5 45965553 45965686 -106571573 + B3 SINE B2 10 142 -74 7 935 420 37 0 0 chr5 45965686 45965740 -106571519 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 935 181 282 25 13 chr5 45966040 45966119 -106571140 - MIRb SINE MIR -131 137 58 7 935 885 166 0 14 chr5 45966554 45966701 -106570558 - B1_Mus1 SINE Alu -2 146 2 7 935 1238 48 0 0 chr5 45967601 45967748 -106569511 + B1_Mus2 SINE Alu 1 147 0 7 935 198 0 0 0 chr5 45967748 45967770 -106569489 + (A)n Simple_repeat Simple_repeat 1 22 0 7 935 213 300 14 0 chr5 45968954 45969024 -106568235 + B1F SINE Alu 71 141 -8 7 935 274 222 0 0 chr5 45969176 45969230 -106568029 + B1_Mur2 SINE Alu 89 142 -7 7 935 269 302 72 40 chr5 45969238 45969514 -106567745 + L1MEc LINE L1 1941 2225 -4175 7 935 266 200 143 0 chr5 45971071 45971141 -106566118 - PB1D10 SINE Alu -6 111 32 7 935 197 254 41 27 chr5 45971608 45971681 -106565578 + L2b LINE L2 3288 3361 -14 7 935 1193 189 0 33 chr5 45972341 45972554 -106564705 + B3 SINE B2 1 206 -10 7 935 516 32 0 0 chr5 45972555 45972617 -106564642 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 935 204 312 110 24 chr5 45973623 45973705 -106563554 + MIRb SINE MIR 93 181 -87 7 935 2501 14 3 0 chr5 45974341 45974623 -106562636 - L1Md_A LINE L1 0 6582 6300 7 935 214 360 110 12 chr5 45974924 45975087 -106562172 + MIRm SINE MIR 97 275 -1 7 935 228 204 41 0 chr5 45976345 45976394 -106560865 + L1M4 LINE L1 3724 3774 -2372 7 935 870 134 0 0 chr5 45976478 45976605 -106560654 - B1_Mus2 SINE Alu -16 131 5 7 935 587 225 53 85 chr5 45976612 45976801 -106560458 + L1M4 LINE L1 3928 4110 -2036 7 935 503 226 0 0 chr5 45976949 45977042 -106560217 + B1F2 SINE Alu 49 141 -8 7 935 2439 113 206 139 chr5 45977384 45977932 -106559327 + RLTR25B LTR ERVK 283 825 -203 7 935 405 0 0 0 chr5 45977932 45977977 -106559282 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 935 2439 113 206 139 chr5 45977977 45978127 -106559132 + RLTR25B LTR ERVK 826 1028 0 7 935 706 264 91 0 chr5 45978669 45978866 -106558393 + B4A SINE B4 9 223 -69 7 935 3939 165 52 3 chr5 45978875 45979561 -106557698 + Lx5 LINE L1 6214 6908 -142 7 935 21 0 0 0 chr5 45979567 45979588 -106557671 + AT_rich Low_complexity Low_complexity 1 21 0 7 935 357 24 0 0 chr5 45979601 45979643 -106557616 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 7 935 496 163 21 42 chr5 45979659 45979755 -106557504 + B1_Mur1 SINE Alu 56 149 0 7 935 302 0 26 0 chr5 45979812 45979850 -106557409 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 935 451 222 143 0 chr5 45980540 45980666 -106556593 - MER68 LTR ERVL -16 547 404 7 935 1461 161 116 61 chr5 45980752 45981130 -106556129 + Lx9 LINE L1 7244 7642 -2 7 935 499 336 74 30 chr5 45981130 45981400 -106555859 - MER68 LTR ERVL -279 284 3 7 935 1087 242 34 11 chr5 45981549 45981812 -106555447 + B4A SINE B4 1 269 -23 7 935 217 237 34 0 chr5 45982688 45982747 -106554512 + CT-rich Low_complexity Low_complexity 2 62 0 7 935 7637 20 5 1 chr5 45982930 45983795 -106553464 - L1Md_F2 LINE L1 -1 6581 5714 7 935 367 317 35 0 chr5 45984912 45985054 -106552205 - B1F1 SINE Alu -1 148 2 7 935 433 329 148 23 chr5 45985104 45985711 -106551548 + L2 LINE L2 1855 2537 -882 7 935 562 292 49 0 chr5 45985722 45985925 -106551334 + L1M4 LINE L1 5353 5564 -598 7 935 1507 158 123 12 chr5 45986007 45986339 -106550920 + ORR1D1 LTR MaLR 1 369 -5 7 935 369 0 0 0 chr5 45986437 45986478 -106550781 + (TC)n Simple_repeat Simple_repeat 2 42 0 7 935 361 344 36 88 chr5 45987584 45987833 -106549426 + B4A SINE B4 2 237 -55 7 935 268 246 27 14 chr5 45987835 45987909 -106549350 + RSINE1 SINE B4 78 152 -13 7 935 25 0 0 0 chr5 45988033 45988058 -106549201 + AT_rich Low_complexity Low_complexity 1 25 0 7 935 1652 180 68 6 chr5 45988064 45988416 -106548843 + ORR1D1 LTR MaLR 1 374 0 7 935 4092 118 92 2 chr5 45988614 45989232 -106548027 - RLTR33 LTR ERVK 0 678 5 7 935 188 152 0 42 chr5 45989790 45989838 -106547421 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 7 935 248 398 20 40 chr5 45991573 45991772 -106545487 - MIRb SINE MIR -21 247 53 7 935 355 316 40 13 chr5 45994616 45994767 -106542492 - L2a LINE L2 -6 3420 3266 7 935 575 98 0 0 chr5 45994794 45994886 -106542373 + RLTR28 LTR ERVL 166 257 -267 7 935 32993 38 1 0 chr5 45994886 45998841 -106538418 - L1Md_T LINE L1 -296 5587 1630 7 935 8220 34 0 0 chr5 45998841 45999791 -106537468 + L1Md_T LINE L1 5633 6582 0 7 935 1164 117 0 6 chr5 45999820 46000000 -106537259 + ORR1A2 LTR MaLR 1 179 -148 7 935 956 97 27 14 chr5 46000000 46000146 -106537113 + ORR1A1 LTR MaLR 199 346 0 1 935 214 381 19 37 chr5 46000189 46000350 -106536909 - L2a LINE L2 -209 3217 3060 2 935 658 291 86 10 chr5 46000370 46000672 -106536587 + L1MB1 LINE L1 5842 6166 -2 3 935 234 254 0 0 chr5 46000698 46000765 -106536494 + GA-rich Low_complexity Low_complexity 3 69 0 4 935 4307 33 33 0 chr5 46000783 46001264 -106535995 + L1Md_T LINE L1 6086 6582 0 5 935 473 331 191 32 chr5 46001453 46001862 -106535397 - MLT1E3 LTR MaLR -88 536 63 6 935 1876 186 38 22 chr5 46002205 46002573 -106534686 + ORR1D1 LTR MaLR 1 374 0 7 935 5204 203 80 94 chr5 46002573 46003962 -106533297 + ORR1D1-int LTR MaLR 1 1370 0 7 935 1540 183 128 12 chr5 46003962 46004305 -106532954 + ORR1D1 LTR MaLR 1 383 -1 7 935 519 338 97 35 chr5 46004622 46004932 -106532327 + LTR16B1 LTR ERVL 43 371 -109 8 935 197 135 19 0 chr5 46005073 46005125 -106532134 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 9 935 230 407 66 22 chr5 46005393 46005574 -106531685 - MER5A DNA MER1_type 0 189 1 1 935 183 114 0 0 chr5 46005997 46006032 -106531227 + (T)n Simple_repeat Simple_repeat 1 35 0 1 936 353 56 0 129 chr5 46006366 46006428 -106530831 + ORR1A1 LTR MaLR 285 338 -8 1 936 3165 175 91 13 chr5 46006418 46007031 -106530228 + RMER19B LTR ERVK 241 901 -1 1 936 195 42 0 0 chr5 46007622 46007646 -106529613 + (TTCCC)n Simple_repeat Simple_repeat 2 25 0 1 936 405 136 0 0 chr5 46007649 46007715 -106529544 + (TTTC)n Simple_repeat Simple_repeat 1 66 0 1 936 308 307 35 0 chr5 46007770 46007884 -106529375 - PB1D9 SINE Alu 0 120 3 1 936 298 309 110 30 chr5 46007984 46008084 -106529175 - MER20 DNA MER1_type -111 108 1 1 936 2832 75 145 141 chr5 46009229 46009739 -106527520 + RLTR1B LTR ERV1 1 512 0 1 936 502 297 8 8 chr5 46009790 46009926 -106527333 - B1F2 SINE Alu -8 141 6 1 936 1865 165 119 121 chr5 46010138 46010585 -106526674 - RLTR41 LTR ERV1 0 446 1 2 936 683 184 120 0 chr5 46010615 46010740 -106526519 - B1_Mur1 SINE Alu -9 140 1 2 936 234 0 0 0 chr5 46010767 46010793 -106526466 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 936 365 309 127 5 chr5 46010927 46011148 -106526111 + L1MC5 LINE L1 7612 7859 -102 2 936 3903 79 22 12 chr5 46011186 46011688 -106525571 + LTRIS4 LTR ERV1 1 507 0 2 936 1796 135 11 0 chr5 46011826 46012100 -106525159 + ORR1A2 LTR MaLR 50 326 -1 2 936 717 73 0 0 chr5 46012101 46012197 -106525062 + (GA)n Simple_repeat Simple_repeat 1 96 0 2 936 495 0 0 0 chr5 46012362 46012417 -106524842 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 936 1837 105 169 16 chr5 46012821 46013140 -106524119 + RLTR9A LTR ERVK 1 368 0 2 936 482 314 57 28 chr5 46014416 46014593 -106522666 + MER20 DNA MER1_type 31 212 -7 2 936 4575 80 7 4 chr5 46014600 46015162 -106522097 - LTRIS2 LTR ERV1 0 564 1 3 936 5648 142 9 113 chr5 46015449 46016546 -106520713 + RLTR13C1 LTR ERVK 1 983 0 3 936 315 161 0 0 chr5 46016817 46016873 -106520386 + CT-rich Low_complexity Low_complexity 1 56 0 3 936 270 0 0 0 chr5 46016879 46016909 -106520350 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 936 384 235 0 96 chr5 46016912 46017006 -106520253 - RSINE1 SINE B4 -46 119 35 3 936 640 287 100 67 chr5 46017034 46017333 -106519926 + MLT1A LTR MaLR 58 366 -8 3 936 215 279 32 16 chr5 46017813 46017875 -106519384 + L2 LINE L2 2330 2392 -1027 3 936 465 50 0 0 chr5 46018854 46018914 -106518345 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 936 414 0 0 0 chr5 46018914 46018959 -106518300 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 936 209 319 57 14 chr5 46020279 46020349 -106516910 + MER5A DNA MER1_type 8 80 -109 3 936 318 292 66 82 chr5 46020436 46020619 -106516640 - MLT1E2 LTR MaLR -7 673 466 4 936 1861 155 92 17 chr5 46020696 46021056 -106516203 - ORR1B1 LTR MaLR -7 387 1 4 936 241 268 91 38 chr5 46021056 46021185 -106516074 - MLT1E2 LTR MaLR -304 201 66 4 936 369 0 0 0 chr5 46021209 46021250 -106516009 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 936 312 83 0 0 chr5 46021489 46021537 -106515722 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 4 936 1264 55 0 0 chr5 46021537 46021682 -106515577 - B1_Mus1 SINE Alu -2 146 2 4 936 1889 60 4 12 chr5 46021983 46022234 -106515025 - MTA_Mm LTR MaLR -147 249 1 4 936 262 224 153 0 chr5 46022835 46022933 -106514326 + Tigger13a DNA MER2_type 208 320 -451 4 936 180 111 0 0 chr5 46022944 46022971 -106514288 + (A)n Simple_repeat Simple_repeat 1 27 0 4 936 1534 239 19 54 chr5 46023141 46023513 -106513746 - ORR1E LTR MaLR 0 359 1 4 936 1264 55 0 0 chr5 46023736 46023882 -106513377 - B1_Mm SINE Alu 0 147 2 4 936 284 209 75 0 chr5 46024067 46024134 -106513125 - L1MB7 LINE L1 -75 6109 6038 5 936 334 285 30 68 chr5 46024134 46024148 -106513111 + MT2B LTR ERVL 152 160 -441 5 936 591 248 16 0 chr5 46024148 46024273 -106512986 + B1_Mur1 SINE Alu 3 129 -20 5 936 600 14 0 0 chr5 46024279 46024348 -106512911 + (GGAA)n Simple_repeat Simple_repeat 3 71 0 5 936 755 298 32 16 chr5 46024433 46024682 -106512577 - L1MB7 LINE L1 -409 5775 5523 5 936 324 0 0 0 chr5 46025382 46025418 -106511841 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 936 308 270 157 35 chr5 46025495 46025610 -106511649 - B1F SINE Alu -8 141 13 5 936 195 244 0 0 chr5 46025633 46025678 -106511581 - MER5B DNA MER1_type -123 55 11 5 936 820 158 102 73 chr5 46025813 46026018 -106511241 - B3 SINE B2 -3 213 3 5 936 1921 249 78 6 chr5 46026252 46026802 -106510457 + L1MA5 LINE L1 5711 6300 0 5 936 248 237 59 88 chr5 46026851 46026953 -106510306 + L1M4 LINE L1 5674 5772 -406 5 936 299 300 101 72 chr5 46027116 46027393 -106509866 + B4A SINE B4 2 286 -6 6 936 1530 195 131 9 chr5 46028244 46028580 -106508679 - MTD LTR MaLR -7 412 36 6 936 913 266 5 31 chr5 46028635 46028829 -106508430 + B3A SINE B2 5 193 -5 6 936 181 216 113 38 chr5 46029641 46029694 -106507565 + L3b LINE CR1 402 458 -24 6 936 558 0 0 0 chr5 46029976 46030038 -106507221 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 936 315 0 0 0 chr5 46030038 46030072 -106507187 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 936 21 0 0 0 chr5 46031716 46031737 -106505522 + AT_rich Low_complexity Low_complexity 1 21 0 6 936 499 306 155 16 chr5 46032044 46032366 -106504893 + MER20B DNA MER1_type 318 684 -99 6 936 334 333 26 35 chr5 46033059 46033174 -106504085 + L2a LINE L2 3312 3425 -1 6 936 708 249 103 86 chr5 46033235 46033793 -106503466 + L1ME3 LINE L1 5368 5968 -194 6 936 378 170 19 87 chr5 46033895 46033998 -106503261 - MYSERV6-int LTR ERVK -4192 4767 4672 7 936 1316 180 71 84 chr5 46034016 46034326 -106502933 - MYSERV6-int LTR ERVK -4262 4697 4392 7 936 508 162 0 0 chr5 46034324 46034404 -106502855 - MYSERV6-int LTR ERVK -4922 4037 3958 7 936 1453 162 32 0 chr5 46034404 46034651 -106502608 + ORR1A4 LTR MaLR 1 255 -74 7 936 737 207 7 7 chr5 46034657 46034798 -106502461 - Lx3C LINE L1 -158 6818 6678 7 936 3717 136 11 26 chr5 46034798 46035410 -106501849 - MYSERV6-int LTR ERVK -7428 1531 929 7 936 287 283 132 8 chr5 46035668 46035789 -106501470 - HAL1 LINE L1 -1623 884 749 7 936 1116 50 0 0 chr5 46036029 46036169 -106501090 - B1_Mus1 SINE Alu 0 148 9 7 936 249 280 0 22 chr5 46036069 46036204 -106501055 - ORR1B1-int LTR MaLR -755 754 623 7 936 540 259 158 40 chr5 46036270 46036447 -106500812 - B3A SINE B2 0 198 1 7 936 3031 47 5 10 chr5 46036835 46037225 -106500034 - MTA_Mm LTR MaLR -8 388 1 7 936 5744 37 5 0 chr5 46037327 46037973 -106499286 - L1Md_T LINE L1 -2 6580 5932 7 936 20146 128 55 0 chr5 46037973 46042267 -106494992 - L1Md_A LINE L1 0 6582 2038 7 936 249 225 114 134 chr5 46042362 46042511 -106494748 - RLTR25A LTR ERVK 0 1103 958 8 936 288 70 0 0 chr5 46042512 46042555 -106494704 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 8 936 270 231 93 37 chr5 46043948 46044056 -106493203 - RLTR20B3 LTR ERVK -355 222 109 8 936 23 0 0 0 chr5 46044307 46044330 -106492929 + AT_rich Low_complexity Low_complexity 1 23 0 8 936 431 63 16 0 chr5 46045165 46045228 -106492031 + (TTA)n Simple_repeat Simple_repeat 3 66 0 8 936 221 125 0 40 chr5 46047706 46047756 -106489503 + (TTA)n Simple_repeat Simple_repeat 1 48 0 8 936 729 254 117 15 chr5 46047943 46048139 -106489120 - B3 SINE B2 0 216 1 8 936 764 191 15 0 chr5 46049492 46049628 -106487631 - B1_Mur1 SINE Alu -5 144 7 8 936 856 264 50 50 chr5 46049637 46049996 -106487263 + RLTR10D LTR ERVK 1 359 0 8 936 1549 184 77 37 chr5 46049996 46050374 -106486885 + IAP-d-int LTR ERVK 1 393 -6149 8 936 9935 284 20 18 chr5 46050366 46053711 -106483548 + IAP-d-int LTR ERVK 1830 5155 -1387 8 936 207 0 0 0 chr5 46053960 46053983 -106483276 + (A)n Simple_repeat Simple_repeat 1 23 0 8 936 1435 143 4 9 chr5 46053997 46054229 -106483030 + IAP-d-int LTR ERVK 6310 6540 -2 8 936 770 249 61 61 chr5 46054229 46054588 -106482671 + RLTR10D LTR ERVK 1 359 0 8 936 1791 259 121 80 chr5 46055092 46056295 -106480964 + RMER12 LTR ERVK 1 1304 -18 9 936 3113 44 5 0 chr5 46056497 46056887 -106480372 - MTA_Mm LTR MaLR -4 392 1 9 936 7931 62 39 1 chr5 46056887 46057945 -106479314 - MTA_Mm-int LTR MaLR 0 1098 1 9 936 4424 67 17 3 chr5 46057990 46058573 -106478686 - L1Md_F2 LINE L1 0 6582 5992 9 936 3181 51 5 5 chr5 46058605 46059000 -106478259 - MTA_Mm LTR MaLR -1 395 1 9 936 525 318 63 42 chr5 46059982 46060268 -106476991 - B4A SINE B4 0 292 1 9 936 3294 23 10 2 chr5 46062950 46063343 -106473916 + MTA_Mm LTR MaLR 1 396 0 9 936 595 314 151 16 chr5 46063825 46064077 -106473182 - B4A SINE B4 -1 291 6 9 936 628 197 35 14 chr5 46064504 46064648 -106472611 + B1_Mur3 SINE Alu 2 148 -1 9 936 261 0 0 0 chr5 46065282 46065311 -106471948 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 936 22 56 0 0 chr5 46065314 46065350 -106471909 + AT_rich Low_complexity Low_complexity 1 36 0 9 936 1354 172 14 0 chr5 46066566 46066787 -106470472 + URR1B DNA MER1_type 1 224 -1 1 936 2187 96 12 42 chr5 46068342 46068679 -106468580 - ORR1A2 LTR MaLR 0 327 1 1 936 1837 186 60 13 chr5 46068819 46069217 -106468042 + MTD LTR MaLR 3 419 0 1 936 1171 269 92 14 chr5 46069894 46070264 -106466995 - Lx8 LINE L1 0 7473 7075 1 936 635 280 6 43 chr5 46070847 46071011 -106466248 + RSINE1 SINE B4 8 165 0 1 936 466 252 98 9 chr5 46071718 46071830 -106465429 + MTE2b LTR MaLR 1 122 -257 1 936 188 180 40 0 chr5 46071880 46071912 -106465347 + polypyrimidine Low_complexity Low_complexity 22 55 0 1 936 504 0 0 0 chr5 46071912 46071968 -106465291 + (TTCCC)n Simple_repeat Simple_repeat 4 59 0 1 936 188 180 40 0 chr5 46071968 46071985 -106465274 + polypyrimidine Low_complexity Low_complexity 5 21 0 1 936 361 336 35 14 chr5 46071989 46072131 -106465128 + MTE2b LTR MaLR 197 341 -38 1 936 1004 233 83 102 chr5 46072173 46072498 -106464761 - MTEa LTR MaLR -54 325 7 1 936 23 0 0 0 chr5 46072911 46072934 -106464325 + AT_rich Low_complexity Low_complexity 1 23 0 1 936 646 165 94 0 chr5 46073326 46073453 -106463806 - B1_Mur1 SINE Alu -9 140 2 1 936 886 238 24 0 chr5 46073781 46073987 -106463272 - B3 SINE B2 -3 213 3 1 936 1244 113 16 5 chr5 46074179 46074365 -106462894 - B2_Mm2 SINE B2 -6 189 2 1 936 265 225 100 11 chr5 46074636 46074726 -106462533 + PB1D10 SINE Alu 3 100 -17 1 936 299 257 0 0 chr5 46074741 46074811 -106462448 + ID4 SINE ID 2 71 -12 1 936 1896 112 7 0 chr5 46075136 46075414 -106461845 - ORR1A2 LTR MaLR -1 326 47 1 936 5134 123 38 41 chr5 46075414 46076285 -106460974 - Lx LINE L1 -4 6650 5783 1 936 839 19 9 0 chr5 46076311 46076416 -106460843 - B1_Mm SINE Alu 0 147 42 1 936 1507 95 5 0 chr5 46076416 46076626 -106460633 - Lx2 LINE L1 -1200 5797 5587 1 936 420 88 0 0 chr5 46076633 46076690 -106460569 - ORR1A2 LTR MaLR -270 57 1 1 936 505 282 97 93 chr5 46076692 46077013 -106460246 - MTEb LTR MaLR -53 326 5 1 936 2905 171 41 14 chr5 46077837 46078395 -106458864 - RMER15 LTR ERVL 0 575 3 1 936 33 56 0 0 chr5 46078699 46078753 -106458506 + AT_rich Low_complexity Low_complexity 1 54 0 1 936 21 0 0 0 chr5 46079767 46079788 -106457471 + AT_rich Low_complexity Low_complexity 1 21 0 1 936 211 292 40 96 chr5 46080093 46080218 -106457041 - L2a LINE L2 -21 3405 3288 1 936 595 302 48 43 chr5 46080431 46080618 -106456641 - B3A SINE B2 -9 189 2 1 936 28 29 0 0 chr5 46081144 46081179 -106456080 + AT_rich Low_complexity Low_complexity 1 35 0 1 936 666 218 0 81 chr5 46081286 46081446 -106455813 - B1_Mus2 SINE Alu 0 147 1 1 936 21 0 0 0 chr5 46081477 46081498 -106455761 + AT_rich Low_complexity Low_complexity 1 21 0 1 936 23 33 0 0 chr5 46081856 46081886 -106455373 + AT_rich Low_complexity Low_complexity 1 30 0 1 936 692 308 58 29 chr5 46082030 46082304 -106454955 - B4A SINE B4 -10 282 1 1 936 21 57 0 0 chr5 46083168 46083203 -106454056 + AT_rich Low_complexity Low_complexity 1 35 0 1 936 28 61 0 0 chr5 46083330 46083379 -106453880 + AT_rich Low_complexity Low_complexity 1 49 0 1 936 905 305 66 39 chr5 46083382 46084002 -106453257 - L1M4 LINE L1 -1771 4375 3739 1 936 29 28 0 0 chr5 46084094 46084130 -106453129 + AT_rich Low_complexity Low_complexity 1 36 0 1 936 329 351 21 0 chr5 46084205 46084299 -106452960 - B1F SINE Alu -7 142 47 1 936 226 329 0 89 chr5 46085883 46085973 -106451286 - ID4 SINE ID 0 83 2 1 936 307 302 33 73 chr5 46085973 46086083 -106451176 - PB1D10 SINE Alu -43 105 1 1 936 226 426 66 44 chr5 46086439 46086665 -106450594 - LTR16A LTR ERVL -97 354 124 1 936 24 53 0 0 chr5 46086853 46086891 -106450368 + AT_rich Low_complexity Low_complexity 1 38 0 1 936 21 0 0 0 chr5 46087126 46087147 -106450112 + AT_rich Low_complexity Low_complexity 1 21 0 1 936 714 216 14 14 chr5 46088033 46088174 -106449085 + B1_Mus2 SINE Alu 2 142 -5 1 936 520 225 189 16 chr5 46088952 46089137 -106448122 - ID_B1 SINE B4 -6 218 2 1 936 815 258 47 42 chr5 46089533 46089821 -106447438 - B4 SINE B4 0 292 3 1 936 201 39 0 0 chr5 46092394 46092420 -106444839 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 936 32 67 0 0 chr5 46094084 46094144 -106443115 + AT_rich Low_complexity Low_complexity 1 60 0 1 936 41 21 0 0 chr5 46094191 46094239 -106443020 + AT_rich Low_complexity Low_complexity 1 48 0 1 936 1197 48 0 13 chr5 46094387 46094536 -106442723 + B1_Mus2 SINE Alu 1 147 0 1 936 383 343 76 12 chr5 46094614 46094785 -106442474 - B3A SINE B2 -13 185 4 1 936 211 344 40 70 chr5 46096028 46096128 -106441131 - L4 LINE RTE -1522 507 411 1 936 2453 264 95 45 chr5 46097924 46098860 -106438399 + Lx8 LINE L1 6105 7087 -386 1 936 1973 178 28 25 chr5 46098898 46099207 -106438052 + RMER10B LTR ERVL 1 310 -88 1 936 2469 66 99 27 chr5 46099207 46099580 -106437679 + MTB LTR MaLR 1 400 0 1 936 1973 178 28 25 chr5 46099580 46099667 -106437592 + RMER10B LTR ERVL 311 398 0 1 936 491 239 156 31 chr5 46100034 46100194 -106437065 + Lx8 LINE L1 7164 7343 -130 1 936 555 274 153 35 chr5 46100959 46101220 -106436039 + MLT1A0 LTR MaLR 70 361 -4 1 936 242 304 70 37 chr5 46101529 46101638 -106435621 + L2c LINE L2 3297 3426 0 1 936 283 262 11 35 chr5 46101640 46101727 -106435532 + L1MEc LINE L1 34 118 -6282 1 936 412 250 11 11 chr5 46102194 46102287 -106434972 - MER20 DNA MER1_type -34 185 93 1 936 326 290 109 0 chr5 46102351 46102544 -106434715 + L1MEc LINE L1 647 860 -5540 1 936 802 250 129 61 chr5 46102713 46103098 -106434161 + RLTR16 LTR ERVK 1 407 -98 1 936 675 0 0 0 chr5 46103098 46103173 -106434086 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 936 802 250 129 61 chr5 46103173 46103260 -106433999 + RLTR16 LTR ERVK 408 504 -1 1 936 332 244 13 0 chr5 46103700 46103778 -106433481 - ID4 SINE ID -4 79 1 1 936 329 294 57 32 chr5 46103799 46103922 -106433337 - ID_B1 SINE B4 -17 207 82 1 936 376 138 113 31 chr5 46104364 46104461 -106432798 + MLT1A1 LTR MaLR 292 396 -12 1 936 26 30 0 0 chr5 46104528 46104561 -106432698 + AT_rich Low_complexity Low_complexity 1 33 0 1 936 256 284 47 12 chr5 46104762 46104870 -106432389 - B1F2 SINE Alu -7 113 3 1 936 312 312 113 14 chr5 46104974 46105325 -106431934 + L1MEc LINE L1 2291 2675 -3644 1 936 375 265 299 0 chr5 46105527 46105644 -106431615 + RSINE1 SINE B4 4 155 -10 1 936 284 304 219 7 chr5 46106347 46106503 -106430756 + MER5A DNA MER1_type 1 189 0 1 936 1235 81 52 11 chr5 46106995 46107169 -106430090 + B2_Mm2 SINE B2 1 181 -14 1 936 270 219 51 76 chr5 46107203 46107282 -106429977 - PB1D10 SINE Alu -7 110 34 1 936 182 171 0 24 chr5 46107713 46107755 -106429504 + CT-rich Low_complexity Low_complexity 4 44 0 1 936 364 187 67 0 chr5 46107825 46107900 -106429359 - B3 SINE B2 -135 81 2 1 936 400 138 35 0 chr5 46108042 46108129 -106429130 + GA-rich Low_complexity Low_complexity 3 92 0 1 936 215 286 57 0 chr5 46109459 46109529 -106427730 + ID4_ SINE ID 4 77 -6 1 936 821 301 36 18 chr5 46109895 46110176 -106427083 - B4A SINE B4 -6 286 1 1 936 248 77 0 25 chr5 46110496 46110536 -106426723 + (TTC)n Simple_repeat Simple_repeat 2 40 0 1 936 942 220 123 38 chr5 46111033 46111349 -106425910 + Lx6 LINE L1 7090 7432 -28 1 936 222 37 0 0 chr5 46111845 46111872 -106425387 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1 936 578 96 0 2 chr5 46113461 46113554 -106423705 - B1_Mus2 SINE Alu -2 147 56 1 936 24 0 0 0 chr5 46120340 46120364 -106416895 + AT_rich Low_complexity Low_complexity 1 24 0 1 936 664 160 19 65 chr5 46121191 46121337 -106415922 - B1_Mur1 SINE Alu -8 141 1 1 936 220 83 20 20 chr5 46121482 46121531 -106415728 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 936 24 0 0 0 chr5 46122128 46122152 -106415107 + AT_rich Low_complexity Low_complexity 1 24 0 1 936 22 0 0 0 chr5 46123883 46123905 -106413354 + AT_rich Low_complexity Low_complexity 1 22 0 1 936 23 0 0 0 chr5 46123976 46123999 -106413260 + AT_rich Low_complexity Low_complexity 1 23 0 1 936 270 231 0 0 chr5 46124576 46124667 -106412592 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 936 471 345 29 0 chr5 46128184 46128323 -106408936 - B1F SINE Alu -6 143 1 1 936 1820 170 39 9 chr5 46128337 46128675 -106408584 + ORR1B1 LTR MaLR 47 394 0 1 936 234 289 95 12 chr5 46129251 46129335 -106407924 + L2a LINE L2 3336 3426 0 1 936 949 239 10 0 chr5 46129749 46129954 -106407305 - B3 SINE B2 -9 207 1 1 936 22 0 0 0 chr5 46132788 46132810 -106404449 + AT_rich Low_complexity Low_complexity 1 22 0 1 936 4114 245 84 17 chr5 46133161 46134219 -106403040 + MERVL_2A-int LTR ERVL 3963 5091 -670 1 936 527 293 116 0 chr5 46134222 46134386 -106402873 + B3 SINE B2 5 187 -29 1 936 220 85 42 21 chr5 46134394 46134442 -106402817 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 1 936 2385 209 59 82 chr5 46134462 46135157 -106402102 + MERVL_2A-int LTR ERVL 5076 5754 -7 1 936 1269 242 156 8 chr5 46135170 46135529 -106401730 + MTD LTR MaLR 8 419 0 1 936 323 273 0 0 chr5 46136267 46136333 -106400926 - PB1D10 SINE Alu -37 80 15 1 936 960 219 10 5 chr5 46137005 46137211 -106400048 + B3 SINE B2 3 209 -7 1 937 3516 63 2 5 chr5 46137371 46137818 -106399441 - L1_Mus1 LINE L1 0 6567 6122 1 937 521 275 46 26 chr5 46137936 46138130 -106399129 + B3A SINE B2 1 198 0 1 937 22 35 0 0 chr5 46138696 46138725 -106398534 + AT_rich Low_complexity Low_complexity 1 29 0 1 937 756 33 0 0 chr5 46140858 46140949 -106396310 + (GAA)n Simple_repeat Simple_repeat 2 92 0 1 937 396 0 0 0 chr5 46140951 46140995 -106396264 + (CCA)n Simple_repeat Simple_repeat 3 46 0 1 937 257 299 75 106 chr5 46141474 46141635 -106395624 + MLT1E1A LTR MaLR 495 650 -30 2 937 264 207 103 0 chr5 46141673 46141731 -106395528 + MLT1E1A-int LTR MaLR 17 80 -1409 2 937 1073 52 0 0 chr5 46141762 46141897 -106395362 + B1_Mus1 SINE Alu 1 135 -13 2 937 351 296 121 15 chr5 46142025 46142224 -106395035 + MLT1E1A-int LTR MaLR 285 504 -985 2 937 1007 274 98 57 chr5 46142235 46143220 -106394039 + L1M4 LINE L1 2969 3994 -2152 2 937 248 365 27 63 chr5 46143262 46143373 -106393886 - PB1D10 SINE Alu -8 109 3 2 937 716 212 15 82 chr5 46143618 46143813 -106393446 - B3A SINE B2 -16 182 1 2 937 735 239 53 12 chr5 46144459 46144628 -106392631 - B3 SINE B2 -40 176 1 2 937 776 285 6 6 chr5 46144699 46144872 -106392387 - B3 SINE B2 -6 210 38 2 937 2254 175 90 11 chr5 46145210 46145666 -106391593 + Lx5 LINE L1 6559 7050 0 2 937 240 273 127 25 chr5 46145695 46145932 -106391327 + L1MC LINE L1 3181 3441 -2705 2 937 460 198 29 10 chr5 46145932 46146034 -106391225 + PB1D9 SINE Alu 1 104 -16 2 937 699 228 7 20 chr5 46146040 46146188 -106391071 + MTD LTR MaLR 248 393 -26 2 937 299 385 0 19 chr5 46146327 46146433 -106390826 + PB1D10 SINE Alu 5 108 -9 2 937 25 65 0 0 chr5 46146446 46146492 -106390767 + AT_rich Low_complexity Low_complexity 1 46 0 2 937 1053 42 35 0 chr5 46146592 46146734 -106390525 - B1_Mm SINE Alu 0 147 1 2 937 830 155 34 7 chr5 46146738 46146887 -106390372 - URR1A DNA MER1_type -4 222 70 2 937 288 335 39 28 chr5 46147075 46147256 -106390003 - Charlie24 DNA MER1_type -298 2152 1970 2 937 254 308 79 80 chr5 46148013 46148373 -106388886 - Charlie6 DNA MER1_type -1977 1523 1284 2 937 272 259 70 58 chr5 46149260 46149346 -106387913 - URR1A DNA MER1_type -118 108 22 2 937 542 321 86 122 chr5 46149386 46149688 -106387571 - B4A SINE B4 0 292 2 2 937 201 135 0 51 chr5 46149761 46149800 -106387459 + (TATG)n Simple_repeat Simple_repeat 2 38 0 2 937 213 65 0 0 chr5 46149800 46149831 -106387428 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 2 937 222 309 0 12 chr5 46149924 46150006 -106387253 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 937 678 290 0 0 chr5 46150007 46150145 -106387114 - ID_B1 SINE B4 -8 216 79 2 937 229 301 100 64 chr5 46150059 46150169 -106387090 - MT2B2 LTR ERVL -343 241 128 2 937 346 286 112 53 chr5 46150735 46150905 -106386354 - Tigger7 DNA MER2_type -10 2481 2302 2 937 336 283 61 0 chr5 46151042 46151141 -106386118 - Tigger7 DNA MER2_type -2347 144 40 2 937 239 268 18 0 chr5 46151386 46151442 -106385817 + RSINE1 SINE B4 73 129 -36 2 937 26 64 0 0 chr5 46151443 46151490 -106385769 + AT_rich Low_complexity Low_complexity 1 47 0 2 937 225 226 177 0 chr5 46152306 46152430 -106384829 - MamRep4096 DNA hAT? -202 224 79 2 937 1168 61 0 13 chr5 46152757 46152907 -106384352 + B1_Mus1 SINE Alu 1 148 0 2 937 22 0 0 0 chr5 46152907 46152929 -106384330 + AT_rich Low_complexity Low_complexity 1 22 0 2 937 282 322 72 14 chr5 46152962 46153212 -106384047 + L1M5 LINE L1 5451 5721 -458 2 937 311 341 150 0 chr5 46153605 46153831 -106383428 - Charlie4a DNA MER1_type -4 504 245 2 937 340 291 43 29 chr5 46153881 46154019 -106383240 - Charlie4a DNA MER1_type -355 153 14 2 937 3684 73 28 6 chr5 46155447 46155944 -106381315 - L1Md_F2 LINE L1 0 6582 6075 2 937 372 228 49 10 chr5 46156085 46156187 -106381072 + Lx9 LINE L1 7532 7637 -7 2 937 2609 98 45 5 chr5 46156335 46156756 -106380503 + BGLII_B LTR ERVK 4 441 0 2 937 230 296 75 61 chr5 46156884 46157096 -106380163 - L1MC4 LINE L1 -876 7166 6952 2 937 1530 39 0 80 chr5 46157679 46157938 -106379321 - L1Md_F3 LINE L1 0 6584 6363 2 937 30 0 0 0 chr5 46158157 46158187 -106379072 + AT_rich Low_complexity Low_complexity 1 30 0 2 937 26 30 0 0 chr5 46158335 46158368 -106378891 + AT_rich Low_complexity Low_complexity 1 33 0 2 937 443 141 98 90 chr5 46158964 46159097 -106378162 - B1_Mus2 SINE Alu -13 134 1 2 937 184 317 0 0 chr5 46159101 46159142 -106378117 + L3 LINE CR1 4001 4041 -448 2 937 407 299 110 15 chr5 46159449 46159585 -106377674 + B1F SINE Alu 1 149 0 2 937 504 293 48 6 chr5 46160946 46161111 -106376148 - Lx9 LINE L1 -211 7433 7262 2 937 573 194 147 0 chr5 46161244 46161373 -106375886 - B1_Mus1 SINE Alu 0 148 1 2 937 31 68 0 0 chr5 46161384 46161443 -106375816 + AT_rich Low_complexity Low_complexity 1 59 0 2 937 765 285 143 34 chr5 46161474 46161768 -106375491 + MER2 DNA MER2_type 18 343 -2 2 937 263 282 26 0 chr5 46162572 46162650 -106374609 + ID4_ SINE ID 4 83 0 2 937 186 189 0 0 chr5 46163564 46163601 -106373658 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 937 205 186 0 0 chr5 46163618 46163661 -106373598 + A-rich Low_complexity Low_complexity 1 43 0 2 937 280 333 0 0 chr5 46163670 46163748 -106373511 + ID4_ SINE ID 2 79 -4 2 937 1368 212 52 0 chr5 46164069 46164356 -106372903 + Lx9 LINE L1 6321 6622 -1022 2 937 316 218 135 94 chr5 46164357 46164564 -106372695 + MTEb LTR MaLR 184 379 0 2 937 26 50 0 0 chr5 46165695 46165735 -106371524 + AT_rich Low_complexity Low_complexity 1 40 0 2 937 180 111 0 0 chr5 46167426 46167453 -106369806 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 937 1289 296 97 21 chr5 46168323 46168848 -106368411 + Lx8 LINE L1 6813 7377 -96 2 937 2187 57 0 3 chr5 46169224 46169507 -106367752 - L1_Mus1 LINE L1 0 6567 6286 2 937 363 240 142 113 chr5 46170117 46170399 -106366860 + B4 SINE B4 2 291 -1 2 937 453 266 47 24 chr5 46170518 46170645 -106366614 - B1F2 SINE Alu -9 140 11 2 937 186 43 0 0 chr5 46170937 46170960 -106366299 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 937 685 226 99 18 chr5 46170989 46171160 -106366099 + B3 SINE B2 8 192 -24 2 937 32 0 0 0 chr5 46171179 46171211 -106366048 + AT_rich Low_complexity Low_complexity 1 32 0 2 937 559 261 50 8 chr5 46171306 46171426 -106365833 + B1F1 SINE Alu 6 130 -19 2 937 194 328 88 24 chr5 46171518 46171643 -106365616 + MIRb SINE MIR 77 209 -59 2 937 522 0 0 0 chr5 46171898 46171956 -106365303 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 937 219 133 0 0 chr5 46172114 46172159 -106365100 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 2 937 239 243 0 28 chr5 46172173 46172245 -106365014 + Lx7 LINE L1 7612 7681 -15 2 937 642 266 64 13 chr5 46172374 46172686 -106364573 + L1MC2 LINE L1 3199 3526 -2620 2 937 1077 276 72 31 chr5 46172775 46173424 -106363835 + L1MC2 LINE L1 5333 6029 -1756 2 937 21 57 0 0 chr5 46174018 46174053 -106363206 + AT_rich Low_complexity Low_complexity 1 35 0 2 937 2768 244 106 9 chr5 46174159 46174855 -106362404 + Lx8 LINE L1 6384 7147 -326 2 937 22 56 0 0 chr5 46175009 46175045 -106362214 + AT_rich Low_complexity Low_complexity 1 36 0 2 937 461 232 40 164 chr5 46175089 46175290 -106361969 + MTE2a LTR MaLR 1 176 -203 2 937 7278 80 19 4 chr5 46175293 46176301 -106360958 + L1_Mus3 LINE L1 5615 6637 -1 2 937 316 247 175 0 chr5 46176390 46176487 -106360772 + MTE2a LTR MaLR 266 379 0 2 937 189 0 0 0 chr5 46176651 46176672 -106360587 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 937 570 67 0 0 chr5 46176674 46176749 -106360510 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 937 2356 56 65 9 chr5 46177162 46177484 -106359775 + L1Md_F2 LINE L1 6241 6580 -2 2 937 490 298 79 75 chr5 46177533 46177747 -106359512 + B4A SINE B4 2 216 -76 2 937 3090 242 103 2 chr5 46178018 46178827 -106358432 + Lx6 LINE L1 42 931 -6797 2 937 315 152 34 0 chr5 46178861 46178920 -106358339 + Lx6 LINE L1 2515 2575 -3305 2 937 9489 157 50 40 chr5 46178976 46179741 -106357518 + Lx6 LINE L1 3872 4625 -1255 2 937 300 53 0 0 chr5 46179741 46179779 -106357480 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 937 9489 166 57 41 chr5 46179779 46181145 -106356114 + Lx6 LINE L1 4626 6017 -1443 2 937 357 24 0 0 chr5 46181145 46181187 -106356072 + (TGGA)n Simple_repeat Simple_repeat 2 43 0 2 937 5254 239 111 45 chr5 46181187 46182550 -106354709 + Lx6 LINE L1 6018 7696 0 2 937 1871 131 70 29 chr5 46183998 46184343 -106352916 + ORR1B2 LTR MaLR 1 359 -8 2 937 1445 273 53 4 chr5 46184396 46184889 -106352370 + L1MA4A LINE L1 3839 4355 -1525 2 937 776 285 92 72 chr5 46184919 46185283 -106351976 + L1MA4A LINE L1 5060 5473 -824 2 937 398 265 166 51 chr5 46185283 46185458 -106351801 + B3A SINE B2 3 197 -1 2 937 776 275 77 80 chr5 46185458 46185770 -106351489 + L1MA4A LINE L1 5474 5794 -509 2 937 297 0 0 0 chr5 46185770 46185803 -106351456 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 937 709 299 94 67 chr5 46185803 46185915 -106351344 + L1MA4A LINE L1 5795 5927 -376 2 937 28 61 0 0 chr5 46185924 46185973 -106351286 + AT_rich Low_complexity Low_complexity 1 49 0 2 937 21 36 0 0 chr5 46186391 46186419 -106350840 + AT_rich Low_complexity Low_complexity 1 28 0 2 937 1223 21 0 0 chr5 46186666 46186811 -106350448 + B1_Mm SINE Alu 1 145 -2 2 937 207 0 0 0 chr5 46186811 46186834 -106350425 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 937 1013 81 0 30 chr5 46187032 46187197 -106350062 + L1Md_F2 LINE L1 6423 6582 0 2 937 1444 204 25 47 chr5 46187199 46187559 -106349700 + Lx9 LINE L1 5435 5786 -61 2 937 357 309 63 69 chr5 46187742 46187916 -106349343 + Lx9 LINE L1 6302 6474 -1170 2 937 406 186 152 20 chr5 46188089 46188286 -106348973 - Lx9 LINE L1 -1 7643 7421 2 937 208 208 19 19 chr5 46188737 46188791 -106348468 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 2 937 265 332 107 20 chr5 46188882 46189079 -106348180 - Lx9 LINE L1 -289 7355 7142 2 937 996 300 45 19 chr5 46189073 46189386 -106347873 - Lx9 LINE L1 -829 6815 6495 2 937 379 156 0 0 chr5 46189399 46189463 -106347796 - MTB_Mm LTR MaLR -343 64 1 2 937 239 97 0 0 chr5 46189463 46189494 -106347765 + Lx6 LINE L1 6231 6261 -1199 2 937 352 253 0 13 chr5 46189490 46189566 -106347693 + Lx6 LINE L1 7075 7149 -311 2 937 275 122 20 0 chr5 46189681 46189730 -106347529 + (GAA)n Simple_repeat Simple_repeat 2 51 0 2 937 526 281 55 0 chr5 46189873 46190001 -106347258 + RSINE1 SINE B4 14 148 -17 2 937 2113 154 37 19 chr5 46190327 46190704 -106346555 + ORR1C2 LTR MaLR 1 384 0 2 937 2679 223 48 17 chr5 46190704 46191307 -106345952 + ORR1C2-int LTR MaLR 1 622 -887 2 937 29968 86 16 53 chr5 46191313 46196873 -106340386 + L1Md_F2 LINE L1 242 5585 -298 2 937 7536 67 3 9 chr5 46196874 46197865 -106339394 + L1Md_F2 LINE L1 5587 6571 -11 2 937 3595 160 43 35 chr5 46197925 46198645 -106338614 + ORR1C2-int LTR MaLR 784 1509 0 2 937 1700 175 48 61 chr5 46198645 46199022 -106338237 + ORR1C2 LTR MaLR 1 372 -12 2 937 238 280 60 102 chr5 46199046 46199213 -106338046 - L1M1 LINE L1 -446 5854 5695 2 937 531 188 12 163 chr5 46199220 46199392 -106337867 + MT2A LTR ERVL 1 146 -387 2 937 297 0 0 0 chr5 46199398 46199431 -106337828 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 937 675 144 24 12 chr5 46199431 46199600 -106337659 + (TA)n Simple_repeat Simple_repeat 1 171 0 2 937 245 75 0 24 chr5 46199603 46199644 -106337615 + (GGGAGA)n Simple_repeat Simple_repeat 4 43 0 3 937 1071 301 75 27 chr5 46199722 46199762 -106337497 - L1M2 LINE L1 -272 5575 5535 3 937 185 0 40 0 chr5 46199762 46199787 -106337472 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 3 937 1095 286 59 11 chr5 46199787 46200411 -106336848 - L1M2 LINE L1 -313 5534 4881 3 937 411 288 62 33 chr5 46201053 46201329 -106335930 - L1M2 LINE L1 -1231 4912 4629 3 937 329 303 170 43 chr5 46201706 46202289 -106334970 - L1M2 LINE L1 -1526 4614 3958 3 937 307 218 51 0 chr5 46202256 46202334 -106334925 - L1_Mur2 LINE L1 -2275 3602 3521 3 937 1426 207 99 31 chr5 46202334 46202688 -106334571 + ORR1C2 LTR MaLR 1 378 -6 3 937 812 259 32 18 chr5 46202701 46202921 -106334338 - MTE2b LTR MaLR -1 378 156 3 937 647 294 86 9 chr5 46203053 46203403 -106333856 - L1M2 LINE L1 -2589 3554 3178 3 937 219 69 0 0 chr5 46203487 46203516 -106333743 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 3 937 592 319 12 18 chr5 46203684 46203847 -106333412 + RSINE1 SINE B4 1 162 -3 3 937 399 237 51 26 chr5 46204207 46204324 -106332935 + MLT1D LTR MaLR 386 505 0 3 937 209 33 33 0 chr5 46205083 46205113 -106332146 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 937 1051 75 0 0 chr5 46205116 46205250 -106332009 - B1_Mus2 SINE Alu -12 135 2 3 937 877 287 123 0 chr5 46205255 46205638 -106331621 - L1MB7 LINE L1 -221 5963 5534 3 937 2556 52 55 3 chr5 46205686 46206015 -106331244 - ORR1A1 LTR MaLR 0 346 1 3 937 323 281 93 29 chr5 46206024 46206163 -106331096 - L1MB7 LINE L1 -758 5420 5273 3 937 2916 27 0 0 chr5 46206437 46206769 -106330490 + IAPEY3_LTR LTR ERVK 1 332 0 3 937 4670 128 14 9 chr5 46206769 46207726 -106329533 + IAPEY3-int LTR ERVK 1 921 -6592 3 937 49274 55 14 2 chr5 46207721 46214097 -106323162 + IAPEY3-int LTR ERVK 1229 7680 0 3 937 2926 24 0 0 chr5 46214097 46214429 -106322830 + IAPEY3_LTR LTR ERVK 1 332 0 3 937 1166 277 113 79 chr5 46214449 46215033 -106322226 - Lx8 LINE L1 0 7473 6870 3 937 612 262 135 75 chr5 46215037 46215384 -106321875 + ORR1D2 LTR MaLR 3 370 0 3 937 1201 206 81 27 chr5 46215384 46215434 -106321825 + ORR1D2-int LTR MaLR 1 53 -1317 3 937 279 0 0 0 chr5 46215434 46215465 -106321794 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 937 1201 211 272 22 chr5 46215465 46215759 -106321500 + ORR1D2-int LTR MaLR 54 420 -950 3 937 1505 244 138 36 chr5 46215874 46216482 -106320777 - L1_Mur3 LINE L1 -516 5364 4695 3 937 1025 250 97 57 chr5 46216536 46216999 -106320260 - RLTR26 LTR ERVK -137 505 1 3 937 1961 151 28 3 chr5 46217002 46217327 -106319932 - MERVK26-int LTR ERVK -2 6917 6585 3 937 2570 222 129 8 chr5 46217327 46218076 -106319183 - L1_Mur3 LINE L1 -1652 4228 3389 3 937 441 0 0 0 chr5 46218081 46218130 -106319129 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 937 799 226 19 130 chr5 46218137 46218452 -106318807 + RLTR11B LTR ERVK 7 286 -167 3 937 263 296 73 39 chr5 46218460 46218639 -106318620 + BGLII_B LTR ERVK 248 432 -9 3 937 2713 262 101 55 chr5 46218646 46220042 -106317217 - L1_Mur3 LINE L1 -2503 3377 1918 3 937 26 64 0 0 chr5 46220049 46220096 -106317163 + AT_rich Low_complexity Low_complexity 1 47 0 3 937 836 179 81 0 chr5 46220165 46220388 -106316871 - L1_Mur3 LINE L1 -4294 1586 1346 3 937 317 292 54 137 chr5 46220441 46220511 -106316748 - L1_Mur3 LINE L1 -6387 1341 1277 3 937 3293 129 96 60 chr5 46220511 46221177 -106316082 - RMER6C LTR ERVK 0 690 1 3 937 317 292 54 137 chr5 46221177 46221587 -106315672 - L1_Mur3 LINE L1 -6452 1276 901 3 937 298 213 32 32 chr5 46222273 46222336 -106314923 + ID4_ SINE ID 14 76 -7 3 937 244 270 92 26 chr5 46222336 46222349 -106314910 + ID_B1 SINE B4 14 94 -130 3 937 267 265 0 14 chr5 46222388 46222457 -106314802 - MLT1E2 LTR MaLR -414 213 146 3 937 294 299 200 58 chr5 46222457 46222759 -106314500 - Charlie7 DNA MER1_type -1890 722 371 3 937 4885 40 0 20 chr5 46222759 46223364 -106313895 + L1Md_F2 LINE L1 5978 6570 -12 3 937 294 299 200 58 chr5 46223364 46223526 -106313733 - Charlie7 DNA MER1_type -2242 370 192 3 937 1271 319 67 34 chr5 46223810 46224601 -106312658 + Lx8 LINE L1 5645 6461 -1012 3 937 180 0 0 0 chr5 46225079 46225099 -106312160 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 937 290 301 92 56 chr5 46225326 46225576 -106311683 + L1ME3A LINE L1 5775 6033 -140 3 937 353 291 133 44 chr5 46226032 46226212 -106311047 + MIRb SINE MIR 64 259 -9 3 937 2328 214 98 22 chr5 46226489 46227125 -106310134 + Lx9 LINE L1 6960 7643 -1 3 937 303 352 102 29 chr5 46227816 46228091 -106309168 - L1MD3 LINE L1 -1268 6727 6433 3 937 6935 152 52 10 chr5 46229030 46231035 -106306224 + Lx5 LINE L1 4949 7050 0 3 937 285 29 0 0 chr5 46231669 46231703 -106305556 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 937 506 294 122 7 chr5 46231970 46232117 -106305142 + MER58A DNA MER1_type 4 167 -57 3 937 273 231 0 0 chr5 46232995 46233047 -106304212 + B4A SINE B4 9 60 -232 3 937 247 269 0 0 chr5 46233059 46233111 -106304148 + B1F2 SINE Alu 14 65 -84 3 937 440 321 76 0 chr5 46233102 46233233 -106304026 + B4A SINE B4 152 292 0 3 937 298 296 30 30 chr5 46233310 46233332 -106303927 - B3A SINE B2 -96 102 2 3 937 432 176 1 14 chr5 46233332 46233411 -106303848 - RSINE1 SINE B4 -212 80 2 3 937 184 77 0 49 chr5 46234730 46234771 -106302488 + (TTTTC)n Simple_repeat Simple_repeat 5 43 0 3 937 518 215 32 16 chr5 46235053 46235176 -106302083 - Tigger5 DNA MER2_type -120 2286 2162 3 937 644 332 65 5 chr5 46235174 46235389 -106301870 - Tigger5 DNA MER2_type -2173 233 6 3 937 225 0 0 0 chr5 46235495 46235520 -106301739 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3 937 294 248 100 17 chr5 46235690 46235859 -106301400 + B3A SINE B2 8 188 -28 3 937 309 26 0 0 chr5 46235878 46235916 -106301343 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 937 463 291 27 47 chr5 46236369 46236517 -106300742 - B1_Mur1 SINE Alu -2 147 3 3 937 22 0 0 0 chr5 46237290 46237312 -106299947 + AT_rich Low_complexity Low_complexity 1 22 0 3 937 338 307 123 35 chr5 46237461 46237817 -106299442 + L1MC4 LINE L1 6612 7082 -960 3 937 691 274 108 17 chr5 46237897 46238257 -106299002 + L1MC4 LINE L1 7276 7668 -374 3 937 333 109 0 0 chr5 46238414 46238469 -106298790 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 937 34910 60 1 24 chr5 46239016 46244906 -106292353 + L1Md_T LINE L1 99 5586 -297 3 937 8012 57 0 0 chr5 46244906 46245902 -106291357 + L1Md_T LINE L1 5587 6582 0 3 937 209 226 0 19 chr5 46246303 46246357 -106290902 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 3 937 201 275 0 0 chr5 46248022 46248091 -106289168 + C-rich Low_complexity Low_complexity 1 69 0 3 937 25 51 0 0 chr5 46248372 46248411 -106288848 + GC_rich Low_complexity Low_complexity 1 39 0 3 937 209 57 29 0 chr5 46248432 46248467 -106288792 + (CCG)n Simple_repeat Simple_repeat 3 38 0 3 937 258 105 0 0 chr5 46248674 46248712 -106288547 + (CGG)n Simple_repeat Simple_repeat 3 40 0 3 937 21 36 0 0 chr5 46249697 46249725 -106287534 + AT_rich Low_complexity Low_complexity 1 28 0 3 937 227 214 18 0 chr5 46250336 46250392 -106286867 - MLT1H2 LTR MaLR -9 540 484 3 937 249 306 13 40 chr5 46250474 46250549 -106286710 - MLT1H2 LTR MaLR -261 288 216 3 937 381 161 167 18 chr5 46250571 46250685 -106286574 - Lx4B LINE L1 0 7058 6928 3 937 376 219 49 0 chr5 46250686 46250768 -106286491 - MLT1H2 LTR MaLR -330 159 74 3 937 32168 68 17 9 chr5 46251334 46254617 -106282642 - L1Md_F2 LINE L1 -2 6580 3264 3 937 2442 80 0 0 chr5 46254617 46254944 -106282315 - L1Md_A LINE L1 -3 6579 6253 3 937 32168 70 17 11 chr5 46254944 46256240 -106281019 - L1Md_F2 LINE L1 -2620 3263 1976 3 937 315 0 0 0 chr5 46256240 46256275 -106280984 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 937 32168 122 14 31 chr5 46256275 46257833 -106279426 - L1Md_F2 LINE L1 -3908 1975 438 3 937 953 42 0 0 chr5 46257842 46257960 -106279299 - ORR1A0 LTR MaLR -88 258 141 3 937 1031 65 7 0 chr5 46258292 46258445 -106278814 + (TCTA)n Simple_repeat Simple_repeat 4 157 0 3 937 2614 99 98 2 chr5 46258445 46258851 -106278408 - L1_Mus3 LINE L1 -12 6626 6182 3 937 3337 88 106 9 chr5 46258851 46259565 -106277694 + L1_Mus3 LINE L1 5374 6158 -480 3 937 209 375 102 7 chr5 46261148 46261285 -106275974 - MIR3 SINE MIR -28 180 31 3 937 1088 271 27 11 chr5 46261470 46261839 -106275420 - L1_Rod LINE L1 -6334 838 464 3 937 241 347 95 42 chr5 46262130 46262324 -106274935 - MIR SINE MIR -46 222 21 3 937 1296 47 80 17 chr5 46262525 46262700 -106274559 + B2_Mm1a SINE B2 2 187 -6 3 937 331 384 48 66 chr5 46262775 46263152 -106274107 + ORR1D2 LTR MaLR 1 370 0 3 937 332 397 93 51 chr5 46263581 46263913 -106273346 + HAL1 LINE L1 452 797 -1710 3 937 401 281 67 67 chr5 46263956 46264436 -106272823 + HAL1 LINE L1 859 1338 -1169 3 937 288 307 27 0 chr5 46264724 46264799 -106272460 + PB1D10 SINE Alu 1 77 -40 3 937 398 313 99 53 chr5 46264801 46265084 -106272175 + HAL1 LINE L1 1737 2032 -475 3 937 222 266 47 0 chr5 46265125 46265189 -106272070 + L2a LINE L2 3360 3426 0 3 937 403 403 116 16 chr5 46265638 46265827 -106271432 - MLT1K LTR MaLR -369 226 19 3 937 1097 282 47 95 chr5 46265851 46266231 -106271028 + MTE2b LTR MaLR 18 379 0 3 937 578 256 119 11 chr5 46266308 46266585 -106270674 - MER33 DNA MER1_type -12 312 6 3 937 321 272 196 0 chr5 46267513 46267671 -106269588 + MLT2B3 LTR ERVL 30 218 -336 3 937 288 276 90 84 chr5 46267548 46267714 -106269545 + MTEb LTR MaLR 56 222 -157 3 937 192 179 0 0 chr5 46267763 46267802 -106269457 + CT-rich Low_complexity Low_complexity 4 42 0 3 117 317 287 157 39 chr5 46268157 46268462 -106268797 + L1MC4 LINE L1 7245 7585 -457 3 938 1185 62 0 0 chr5 46268663 46268809 -106268450 + B1_Mus2 SINE Alu 2 147 0 3 938 812 183 32 11 chr5 46268839 46269027 -106268232 - Lx7 LINE L1 -16 7680 7489 3 938 955 187 13 71 chr5 46269087 46269312 -106267947 - MTB_Mm LTR MaLR -195 212 1 3 938 639 295 98 62 chr5 46269358 46269633 -106267626 + MLT1B LTR MaLR 1 285 -105 3 938 6744 85 54 4 chr5 46269798 46271232 -106266027 - L1_Mus3 LINE L1 0 6638 5136 3 938 343 307 148 54 chr5 46271987 46272472 -106264787 - HAL1 LINE L1 -1136 1371 841 3 938 525 76 0 0 chr5 46273014 46273093 -106264166 + (TC)n Simple_repeat Simple_repeat 2 80 0 3 938 261 0 0 0 chr5 46273093 46273122 -106264137 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 938 21 0 0 0 chr5 46273983 46274004 -106263255 + AT_rich Low_complexity Low_complexity 1 21 0 3 938 297 262 126 0 chr5 46275733 46275836 -106261423 - MLT1C LTR MaLR -351 116 1 3 938 31 0 0 0 chr5 46276344 46276375 -106260884 + AT_rich Low_complexity Low_complexity 1 31 0 3 938 415 304 89 0 chr5 46276384 46276552 -106260707 - Lx8 LINE L1 -410 7063 6881 3 938 609 324 131 72 chr5 46276685 46276768 -106260491 + MLT2B1 LTR ERVL 1 97 -423 3 938 3189 38 0 0 chr5 46276768 46277141 -106260118 - L1Md_F2 LINE L1 -12 6570 6198 3 938 609 324 131 72 chr5 46277141 46277462 -106259797 + MLT2B1 LTR ERVL 98 428 -92 3 938 312 176 0 0 chr5 46277495 46277563 -106259696 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 938 409 305 9 9 chr5 46278357 46278463 -106258796 + B1F SINE Alu 1 106 -43 3 938 288 0 0 0 chr5 46278615 46278647 -106258612 + (TGG)n Simple_repeat Simple_repeat 1 32 0 3 938 243 0 0 0 chr5 46278647 46278674 -106258585 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 938 221 0 0 33 chr5 46278674 46278704 -106258555 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 938 429 283 19 0 chr5 46278766 46278872 -106258387 - B4A SINE B4 -183 109 2 4 938 285 289 71 38 chr5 46279189 46279401 -106257858 - L1MA4 LINE L1 -278 6022 5804 4 938 479 128 12 0 chr5 46279419 46279505 -106257754 + (TCCC)n Simple_repeat Simple_repeat 3 89 0 4 938 255 31 0 0 chr5 46279511 46279543 -106257716 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 4 938 1233 101 0 0 chr5 46281100 46281279 -106255980 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 938 477 230 158 9 chr5 46281803 46281917 -106255342 + RSINE1 SINE B4 2 132 -33 4 938 2822 64 2 4 chr5 46281923 46282307 -106254952 + L1Md_F2 LINE L1 5227 5586 -297 4 938 7654 62 8 6 chr5 46282308 46283301 -106253958 + L1Md_F2 LINE L1 5588 6582 0 4 938 239 0 32 0 chr5 46283390 46283421 -106253838 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 938 1640 280 107 27 chr5 46285104 46285665 -106251594 + MER82 DNA MER2_type 39 644 -9 4 938 182 174 0 21 chr5 46285755 46285802 -106251457 + T-rich Low_complexity Low_complexity 1 46 0 4 938 520 345 78 28 chr5 46286266 46286827 -106250432 - L2a LINE L2 -49 3377 2784 4 938 1166 270 114 12 chr5 46286832 46287245 -106250014 - L2a LINE L2 -929 2490 2036 4 938 188 316 43 91 chr5 46287550 46287759 -106249500 + L2 LINE L2 2869 3067 -352 4 938 283 336 28 28 chr5 46288013 46288157 -106249102 - MIRb SINE MIR -30 238 95 4 938 1228 263 92 14 chr5 46288182 46288529 -106248730 + MTD LTR MaLR 46 419 0 4 938 690 330 17 75 chr5 46288971 46289384 -106247875 + MLT2C1 LTR ERVL 1 389 -8 4 938 228 35 0 0 chr5 46289909 46289938 -106247321 + (T)n Simple_repeat Simple_repeat 1 29 0 4 938 439 287 77 118 chr5 46290512 46290639 -106246620 + L1MC3 LINE L1 6766 6885 -900 4 938 408 40 0 0 chr5 46290639 46290689 -106246570 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 938 439 287 77 118 chr5 46290689 46290782 -106246477 + L1MC3 LINE L1 6886 6977 -808 4 938 310 265 139 7 chr5 46290805 46290942 -106246317 + Lx8 LINE L1 6123 6277 -1196 4 938 276 289 20 20 chr5 46290931 46291030 -106246229 + Lx7 LINE L1 7127 7225 -471 4 938 207 139 0 0 chr5 46291040 46291076 -106246183 + (TTG)n Simple_repeat Simple_repeat 1 36 0 4 938 341 265 0 0 chr5 46291076 46291159 -106246100 + Lx7 LINE L1 7221 7303 -393 4 938 322 57 0 36 chr5 46291374 46291429 -106245830 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 4 938 592 311 6 0 chr5 46291430 46291613 -106245646 + Lx8 LINE L1 6268 6451 -1022 4 938 2547 323 31 40 chr5 46291616 46292338 -106244921 + Lx8 LINE L1 6321 7046 -427 4 938 531 82 0 0 chr5 46292338 46292411 -106244848 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 4 938 2547 323 31 40 chr5 46292411 46292849 -106244410 + Lx8 LINE L1 7047 7469 -4 4 938 262 304 132 81 chr5 46293088 46293360 -106243899 + LTR50 LTR ERVL 132 417 -378 4 938 524 293 38 0 chr5 46293660 46293793 -106243466 - ID_B1 SINE B4 -6 218 81 4 938 203 79 26 0 chr5 46294127 46294165 -106243094 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 938 202 318 61 0 chr5 46295625 46295691 -106241568 + MIRc SINE MIR 78 147 -121 4 938 610 283 18 54 chr5 46296050 46296254 -106241005 + RMER15 LTR ERVL 344 542 -33 4 938 243 0 0 0 chr5 46296254 46296281 -106240978 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 938 610 283 18 54 chr5 46296281 46296300 -106240959 + RMER15 LTR ERVL 543 559 -16 4 938 1181 68 0 0 chr5 46296350 46296496 -106240763 + B1_Mm SINE Alu 2 147 0 4 938 396 117 0 0 chr5 46296496 46296573 -106240686 + (A)n Simple_repeat Simple_repeat 1 77 0 4 938 190 156 15 15 chr5 46296596 46296661 -106240598 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 4 938 492 18 0 0 chr5 46296672 46296729 -106240530 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 938 275 331 141 22 chr5 46297118 46297303 -106239956 + MIR SINE MIR 1 207 -55 4 938 1049 199 258 20 chr5 46297342 46297644 -106239615 - ORR1D1 LTR MaLR 0 374 1 4 938 546 284 47 8 chr5 46297917 46298113 -106239146 - MLT1A LTR MaLR -170 220 8 4 938 508 266 133 14 chr5 46298328 46298538 -106238721 - RMER5 LTR ERV1 -264 270 36 4 938 6753 150 37 8 chr5 46298926 46299717 -106237542 + Lx4B LINE L1 5868 6695 -363 4 938 2981 26 0 14 chr5 46299717 46300068 -106237191 + ORR1A0 LTR MaLR 1 346 0 4 938 6753 150 37 8 chr5 46300068 46300427 -106236832 + Lx4B LINE L1 6696 7052 -6 4 938 234 251 23 34 chr5 46300455 46300561 -106236698 + MIR SINE MIR 5 111 -165 4 938 220 320 53 46 chr5 46301011 46301142 -106236117 + MIR SINE MIR 95 226 -36 4 938 196 306 44 110 chr5 46302742 46302878 -106234381 - L2c LINE L2 -15 3372 3246 4 938 730 264 153 31 chr5 46302926 46303177 -106234082 + MER31A LTR ERV1 1 292 -193 4 938 225 0 0 0 chr5 46303177 46303202 -106234057 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 4 938 730 264 153 31 chr5 46303202 46303270 -106233989 + MER31A LTR ERV1 293 359 -126 4 938 1617 219 46 14 chr5 46303260 46303607 -106233652 - ORR1D2 LTR MaLR -12 358 1 4 938 185 359 65 0 chr5 46304044 46304136 -106233123 - L2c LINE L2 -619 2800 2703 4 938 458 336 52 52 chr5 46304197 46304505 -106232754 - L2c LINE L2 -832 2587 2280 4 938 198 0 0 0 chr5 46304695 46304717 -106232542 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 938 341 318 30 30 chr5 46304839 46304972 -106232287 + L1ME1 LINE L1 6033 6165 -14 4 938 2101 257 113 14 chr5 46305050 46305669 -106231590 + MTEa-int LTR MaLR 900 1579 -1 4 938 1103 333 0 9 chr5 46305670 46305985 -106231274 + MTEa LTR MaLR 1 312 -67 4 938 426 20 0 0 chr5 46305986 46306037 -106231222 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 938 280 321 38 15 chr5 46306293 46306426 -106230833 + Charlie7 DNA MER1_type 2189 2324 -288 4 938 630 285 81 14 chr5 46307395 46307690 -106229569 + L1MB3 LINE L1 5670 5984 -199 4 938 296 244 22 11 chr5 46307707 46307798 -106229461 + L1MB3 LINE L1 6080 6171 0 4 938 381 324 65 33 chr5 46307799 46308013 -106229246 - L2 LINE L2 -715 2704 2484 4 938 1229 282 71 13 chr5 46308048 46308357 -106228902 + MTE2b LTR MaLR 46 372 -7 4 938 252 143 0 0 chr5 46310330 46310372 -106226887 + (ATG)n Simple_repeat Simple_repeat 1 42 0 4 938 554 278 66 7 chr5 46310397 46310549 -106226710 - RSINE1 SINE B4 -3 162 2 4 938 1340 264 140 16 chr5 46310549 46311183 -106226076 - Arthur1 DNA Tip100 -140 3807 3095 4 938 348 335 193 20 chr5 46311284 46311580 -106225679 - Arthur1 DNA Tip100 -3566 381 35 4 938 518 303 61 18 chr5 46312112 46312323 -106224936 + MIR SINE MIR 29 238 -24 4 938 210 114 45 0 chr5 46312353 46312397 -106224862 + (TTA)n Simple_repeat Simple_repeat 1 46 0 4 938 201 108 0 0 chr5 46312416 46312453 -106224806 + (T)n Simple_repeat Simple_repeat 1 37 0 4 938 200 305 36 24 chr5 46312513 46312597 -106224662 - MIR3 SINE MIR -31 177 93 4 938 366 23 0 0 chr5 46313526 46313569 -106223690 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 4 938 288 77 0 0 chr5 46313589 46313628 -106223631 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 938 459 317 34 48 chr5 46313935 46314230 -106223029 + B4A SINE B4 2 292 0 4 938 212 143 57 0 chr5 46315995 46316065 -106221194 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 4 938 247 238 16 16 chr5 46316141 46316205 -106221054 - B3 SINE B2 0 216 153 4 938 261 327 87 29 chr5 46316914 46317087 -106220172 - MIRb SINE MIR -29 239 57 4 938 25 0 0 0 chr5 46317131 46317156 -106220103 + AT_rich Low_complexity Low_complexity 1 25 0 4 938 342 0 0 0 chr5 46317992 46318030 -106219229 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 938 820 263 17 39 chr5 46318217 46318450 -106218809 + B4A SINE B4 3 230 -62 4 938 198 0 0 0 chr5 46318510 46318532 -106218727 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 4 938 228 296 0 0 chr5 46318536 46318580 -106218679 + B4 SINE B4 221 264 -28 4 938 441 0 0 0 chr5 46318587 46318636 -106218623 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 938 1915 156 78 3 chr5 46319012 46319360 -106217899 + Lx LINE L1 6280 6653 -1 4 938 23 0 0 0 chr5 46320103 46320126 -106217133 + AT_rich Low_complexity Low_complexity 1 23 0 4 938 531 256 34 6 chr5 46320414 46320591 -106216668 - L1MA5 LINE L1 -6 6294 6113 4 938 836 276 5 9 chr5 46321143 46321355 -106215904 + B3 SINE B2 4 214 -2 4 938 184 317 139 35 chr5 46322218 46322362 -106214897 - MIRb SINE MIR -45 223 65 4 938 185 305 140 19 chr5 46323106 46323213 -106214046 - L2a LINE L2 -11 3415 3296 4 938 346 357 0 35 chr5 46323453 46323569 -106213690 - MLT1N2 LTR MaLR -427 135 24 4 938 254 299 164 53 chr5 46324030 46324182 -106213077 - MIRm SINE MIR -88 188 20 4 938 794 254 101 104 chr5 46325295 46325797 -106211462 + Lx7 LINE L1 5501 6010 -1686 4 938 939 254 121 48 chr5 46326036 46326084 -106211175 + MTEa LTR MaLR 24 86 -293 4 938 234 0 0 0 chr5 46326084 46326110 -106211149 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 938 939 254 121 48 chr5 46326110 46326392 -106210867 + MTEa LTR MaLR 87 378 -1 4 938 7377 80 48 4 chr5 46328406 46329459 -106207800 - Lx3_Mus LINE L1 -2 7007 5908 4 938 390 147 0 0 chr5 46329656 46329724 -106207535 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 938 318 289 1 57 chr5 46330138 46330288 -106206971 + L1M5 LINE L1 5221 5364 -782 4 938 298 315 24 18 chr5 46330344 46330451 -106206808 + MIR SINE MIR 22 120 -148 4 938 1262 97 19 19 chr5 46330451 46330661 -106206598 - L1_Mus3 LINE L1 -7 6631 6422 4 938 282 362 21 81 chr5 46330661 46330739 -106206520 + MIRc SINE MIR 121 196 -72 4 938 1441 288 53 30 chr5 46331383 46331948 -106205311 - Lx9 LINE L1 -206 7438 6861 4 938 355 301 184 21 chr5 46332116 46332890 -106204369 - L1ME2 LINE L1 -36 6128 5216 4 938 341 93 0 18 chr5 46333771 46333826 -106203433 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 938 543 31 0 0 chr5 46334651 46334716 -106202543 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 938 301 257 0 13 chr5 46335818 46335893 -106201366 - L1MC1 LINE L1 -20 6313 6240 4 938 704 94 9 0 chr5 46336868 46336974 -106200285 + (TTTCC)n Simple_repeat Simple_repeat 4 110 0 4 938 306 0 0 0 chr5 46336975 46337009 -106200250 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 4 938 360 0 0 0 chr5 46337031 46337071 -106200188 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 938 4114 186 62 45 chr5 46337115 46338002 -106199257 - Lx7 LINE L1 -100 7596 6692 4 938 2464 166 5 2 chr5 46338002 46338418 -106198841 - MTC LTR MaLR -4 417 1 4 938 4114 186 62 45 chr5 46338418 46338506 -106198753 - Lx7 LINE L1 -1005 6691 6604 4 938 5357 78 13 1 chr5 46338514 46339229 -106198030 - L1_Mus4 LINE L1 -4 6632 5910 4 938 262 191 156 16 chr5 46339230 46339294 -106197965 - B4 SINE B4 -215 77 5 4 938 672 71 18 9 chr5 46340605 46340718 -106196541 + (GA)n Simple_repeat Simple_repeat 1 114 0 5 938 807 274 28 5 chr5 46340879 46341095 -106196164 - ID_B1 SINE B4 -2 222 2 5 938 876 241 96 48 chr5 46342423 46342737 -106194522 - Lx9 LINE L1 -566 7078 6750 5 938 32 0 0 0 chr5 46342884 46342916 -106194343 + AT_rich Low_complexity Low_complexity 1 32 0 5 938 21 36 0 0 chr5 46342954 46342982 -106194277 + AT_rich Low_complexity Low_complexity 1 28 0 5 938 717 93 246 0 chr5 46342990 46343108 -106194151 + B1_Mus1 SINE Alu 1 147 -1 5 938 535 332 190 25 chr5 46343306 46343939 -106193320 + L1MC4 LINE L1 1028 1764 -4451 5 938 794 290 133 0 chr5 46344056 46344349 -106192910 + MER68 LTR ERVL 25 356 -207 5 938 241 366 49 0 chr5 46344376 46344499 -106192760 + MER68 LTR ERVL 410 538 -25 5 938 309 15 41 68 chr5 46344884 46344957 -106192302 + (TTTTTG)n Simple_repeat Simple_repeat 2 72 0 5 938 352 239 33 0 chr5 46344967 46345059 -106192200 + L1MA6 LINE L1 6174 6268 -32 5 938 2938 42 5 21 chr5 46345259 46345646 -106191613 - MTA_Mm LTR MaLR 0 396 16 5 938 320 305 102 0 chr5 46345900 46346018 -106191241 + MIR SINE MIR 107 236 -26 5 938 336 117 39 0 chr5 46346036 46346113 -106191146 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 938 256 208 42 0 chr5 46346633 46346681 -106190578 + MER58B DNA MER1_type 35 84 -257 5 938 311 299 36 65 chr5 46346682 46346850 -106190409 + RSINE1 SINE B4 3 165 0 5 938 27 0 0 0 chr5 46347801 46347828 -106189431 + AT_rich Low_complexity Low_complexity 1 27 0 5 938 317 90 60 0 chr5 46347883 46347950 -106189309 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 938 248 300 0 41 chr5 46347950 46348023 -106189236 - PB1D10 SINE Alu -8 109 40 5 938 243 330 9 36 chr5 46348266 46348376 -106188883 - L2a LINE L2 0 3426 3320 5 938 329 34 114 0 chr5 46348794 46348882 -106188377 + (TCCC)n Simple_repeat Simple_repeat 1 98 0 5 938 751 256 96 0 chr5 46349557 46349756 -106187503 + ID_B1 SINE B4 1 218 -6 5 938 479 312 16 0 chr5 46349777 46349902 -106187357 + B3A SINE B2 28 154 -44 5 938 486 0 0 0 chr5 46349924 46349978 -106187281 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 938 891 203 10 25 chr5 46350095 46350292 -106186967 + B3A SINE B2 1 194 -4 5 938 300 288 122 96 chr5 46350852 46350991 -106186268 - MER5C DNA MER1_type -2 311 166 5 938 628 256 0 15 chr5 46350991 46351126 -106186133 - B1_Mur1 SINE Alu -16 133 1 5 938 300 288 122 96 chr5 46351126 46351289 -106185970 - MER5C DNA MER1_type -148 165 1 5 938 330 385 27 22 chr5 46351333 46351516 -106185743 + L2b LINE L2 3171 3354 -21 5 938 7127 137 42 9 chr5 46352111 46354229 -106183030 - Lx3C LINE L1 -2 6974 4771 5 938 4968 119 11 26 chr5 46354225 46355107 -106182152 + Lx3C LINE L1 3900 4768 -1109 5 938 518 17 0 0 chr5 46355136 46355196 -106182063 + L1Md_F2 LINE L1 5526 5585 -298 5 938 7945 44 4 3 chr5 46355197 46356198 -106181061 + L1Md_F2 LINE L1 5587 6582 0 5 938 670 248 26 26 chr5 46356530 46356683 -106180576 - RSINE1 SINE B4 0 165 13 5 938 486 108 0 0 chr5 46356915 46356989 -106180270 + (CAGAA)n Simple_repeat Simple_repeat 1 74 0 5 938 279 314 39 10 chr5 46356991 46357094 -106180165 - PB1D10 SINE Alu -11 106 1 5 938 387 0 0 0 chr5 46357888 46357931 -106179328 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 938 202 147 0 0 chr5 46357991 46358025 -106179234 + L2a LINE L2 3393 3426 0 5 938 423 0 0 0 chr5 46358127 46358174 -106179085 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 938 530 322 34 7 chr5 46358178 46358325 -106178934 - RSINE1 SINE B4 -7 158 8 5 938 304 213 80 0 chr5 46358545 46358620 -106178639 - L1M2 LINE L1 -3318 2825 2745 5 938 23 54 0 0 chr5 46358718 46358755 -106178504 + AT_rich Low_complexity Low_complexity 1 37 0 5 938 333 243 18 18 chr5 46358805 46358914 -106178345 + L1MA4A LINE L1 5473 5581 -719 5 938 314 236 156 2 chr5 46359069 46359219 -106178040 + L1MA4A LINE L1 5817 5999 -304 5 938 272 200 0 0 chr5 46359365 46359420 -106177839 + L1M2 LINE L1 4163 4217 -1926 5 938 233 260 0 0 chr5 46359420 46359470 -106177789 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 938 593 266 166 6 chr5 46359473 46359798 -106177461 + L1M2 LINE L1 4223 4599 -1544 5 938 5587 154 19 11 chr5 46359819 46360775 -106176484 + Lx2A1 LINE L1 6046 7008 0 5 938 315 260 31 23 chr5 46360776 46360906 -106176353 + Lx8 LINE L1 7333 7463 -10 5 938 360 310 100 12 chr5 46361069 46361229 -106176030 + MLT1H LTR MaLR 374 547 -2 5 938 26 0 0 0 chr5 46361558 46361584 -106175675 + AT_rich Low_complexity Low_complexity 1 26 0 5 938 13066 13 0 0 chr5 46362198 46363760 -106173499 + L1Md_F2 LINE L1 4025 5586 -297 5 938 8098 44 2 3 chr5 46363760 46364746 -106172513 + L1Md_F2 LINE L1 5587 6571 -11 5 938 288 344 112 23 chr5 46365019 46365216 -106172043 + MIRb SINE MIR 48 259 -9 5 938 1954 309 65 48 chr5 46365768 46366839 -106170420 - Lx8 LINE L1 -198 7275 6186 5 938 585 253 18 6 chr5 46367131 46367298 -106169961 + Lx7 LINE L1 5686 5854 -1842 5 938 33 43 0 0 chr5 46367337 46367384 -106169875 + AT_rich Low_complexity Low_complexity 1 47 0 5 938 579 262 74 45 chr5 46367398 46367574 -106169685 - B3A SINE B2 -15 183 3 5 938 192 40 0 0 chr5 46367590 46367615 -106169644 + (CTAAA)n Simple_repeat Simple_repeat 3 27 0 5 938 1248 217 64 23 chr5 46367632 46367976 -106169283 - RMER1B Other Other -13 1053 696 5 938 27 0 0 0 chr5 46368269 46368296 -106168963 + AT_rich Low_complexity Low_complexity 1 27 0 5 938 33835 41 4 3 chr5 46369367 46374570 -106162689 + L1Md_T LINE L1 285 5589 -297 5 938 8569 28 0 0 chr5 46374571 46375564 -106161695 + L1Md_T LINE L1 5591 6583 -2 5 938 21 0 0 0 chr5 46375630 46375651 -106161608 + AT_rich Low_complexity Low_complexity 1 21 0 5 938 641 352 70 3 chr5 46375783 46376068 -106161191 - MLT1A0 LTR MaLR 0 365 62 5 938 196 238 31 16 chr5 46376097 46376161 -106161098 - L4 LINE RTE -1407 622 558 5 938 4014 22 0 0 chr5 46376306 46376797 -106160462 + L1Md_T LINE L1 5096 5586 -297 5 938 8392 36 0 2 chr5 46376797 46377834 -106159425 + L1Md_T LINE L1 5587 6582 0 5 938 447 253 80 0 chr5 46378500 46378650 -106158609 - MIRc SINE MIR -19 249 88 5 938 502 326 94 34 chr5 46378749 46378984 -106158275 - MIR SINE MIR 0 262 14 5 938 345 319 169 28 chr5 46378994 46379207 -106158052 + MIR SINE MIR 20 262 0 5 938 206 286 13 0 chr5 46379409 46379486 -106157773 + (TATATG)n Simple_repeat Simple_repeat 3 80 0 5 938 237 132 0 0 chr5 46379486 46379524 -106157735 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 938 956 242 29 43 chr5 46379759 46380035 -106157224 + B4A SINE B4 5 276 -16 5 938 507 33 0 0 chr5 46380088 46380149 -106157110 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 938 414 0 0 0 chr5 46380149 46380194 -106157065 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 938 456 19 0 0 chr5 46380260 46380313 -106156946 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 5 938 30064 88 7 4 chr5 46380380 46385748 -106151511 + L1Md_F2 LINE L1 208 5586 -297 5 938 7919 53 6 0 chr5 46385748 46386738 -106150521 + L1Md_F2 LINE L1 5587 6582 0 5 938 5696 86 9 8 chr5 46386734 46387530 -106149729 + L1Md_F2 LINE L1 5783 6579 -3 5 938 234 345 100 0 chr5 46387717 46387827 -106149432 + LTR33 LTR ERVL 45 165 -350 5 938 447 19 0 0 chr5 46387835 46387887 -106149372 + (CAA)n Simple_repeat Simple_repeat 2 53 0 5 938 1513 253 54 6 chr5 46388100 46388454 -106148805 + MTE2b LTR MaLR 1 371 -8 5 938 232 261 139 35 chr5 46388844 46388959 -106148300 - MIRc SINE MIR -2 266 140 5 938 1041 309 25 18 chr5 46389053 46389458 -106147801 - MER89 LTR ERV1 -15 544 39 5 938 5637 62 6 1 chr5 46389482 46390209 -106147050 + L1_Mus2 LINE L1 5835 6564 -2 5 938 2700 161 62 22 chr5 46390229 46390731 -106146528 - RLTR11A LTR ERVK -6 522 1 5 938 332 285 44 102 chr5 46391794 46391931 -106145328 + B4 SINE B4 27 155 -137 5 938 216 304 36 0 chr5 46392023 46392079 -106145180 + RSINE1 SINE B4 84 141 -24 5 938 516 72 0 0 chr5 46392093 46392162 -106145097 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 938 475 330 48 94 chr5 46393289 46393663 -106143596 + ORR1E LTR MaLR 1 357 -2 5 938 2601 127 28 33 chr5 46393683 46394108 -106143151 + RLTR23 LTR ERV1 8 430 0 5 938 261 244 0 0 chr5 46394341 46394427 -106142832 + (CAA)n Simple_repeat Simple_repeat 2 87 0 5 938 790 258 41 0 chr5 46395176 46395370 -106141889 - B3 SINE B2 -13 203 2 5 938 262 247 7 127 chr5 46396581 46396727 -106140532 + ORR1E LTR MaLR 1 127 -247 5 938 270 0 0 0 chr5 46398353 46398383 -106138876 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 938 327 105 0 0 chr5 46398383 46398439 -106138820 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 938 2140 0 192 0 chr5 46399034 46399315 -106137944 - MT2_Mm LTR ERVL -130 363 29 5 939 253 309 60 52 chr5 46400046 46400162 -106137097 + MER5A1 DNA MER1_type 48 164 -2 5 939 26 74 0 0 chr5 46400693 46400747 -106136512 + AT_rich Low_complexity Low_complexity 1 54 0 5 939 208 125 0 70 chr5 46401541 46401584 -106135675 - L4 LINE RTE -278 1751 1712 5 939 507 95 0 0 chr5 46402254 46402328 -106134931 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 5 939 522 0 0 0 chr5 46403155 46403213 -106134046 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 939 183 234 83 21 chr5 46403377 46403425 -106133834 - L2a LINE L2 -25 3401 3351 5 939 183 361 60 0 chr5 46403573 46403656 -106133603 + MIRb SINE MIR 65 152 -116 5 939 346 335 66 20 chr5 46403812 46403964 -106133295 - MIR SINE MIR -98 164 6 5 939 751 228 99 42 chr5 46404091 46404283 -106132976 - B3 SINE B2 -9 207 5 5 939 21 57 0 0 chr5 46404296 46404331 -106132928 + AT_rich Low_complexity Low_complexity 1 35 0 5 939 23092 157 12 10 chr5 46404335 46409361 -106127898 + L1Md_F2 LINE L1 552 5586 -297 5 939 6943 72 44 6 chr5 46409362 46410320 -106126939 + L1Md_F2 LINE L1 5588 6581 -1 5 939 4978 109 76 1 chr5 46410319 46411083 -106126176 + Lx LINE L1 5827 6647 -7 5 939 186 43 0 0 chr5 46411099 46411122 -106126137 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 6 939 29 0 0 0 chr5 46412081 46412110 -106125149 + AT_rich Low_complexity Low_complexity 1 29 0 6 939 23 33 0 0 chr5 46412142 46412172 -106125087 + AT_rich Low_complexity Low_complexity 1 30 0 6 939 215 170 21 0 chr5 46412210 46412257 -106125002 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 939 339 25 0 0 chr5 46412261 46412301 -106124958 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 939 693 0 0 0 chr5 46414406 46414483 -106122776 + (GGA)n Simple_repeat Simple_repeat 2 78 0 6 939 446 331 64 37 chr5 46415865 46416053 -106121206 + MIRb SINE MIR 58 250 -18 6 939 22 35 0 0 chr5 46416081 46416110 -106121149 + AT_rich Low_complexity Low_complexity 1 29 0 6 939 481 281 108 28 chr5 46416539 46416901 -106120358 + L1MB1 LINE L1 4599 4989 -1151 6 939 938 249 6 0 chr5 46416983 46417160 -106120099 + B3 SINE B2 34 211 -5 6 939 354 285 165 30 chr5 46417255 46417552 -106119707 + L1MB1 LINE L1 5492 5828 -340 6 939 470 268 27 0 chr5 46417568 46417680 -106119579 + RSINE1 SINE B4 17 131 -34 6 939 713 270 64 38 chr5 46417719 46418062 -106119197 + L1MB2 LINE L1 5816 6167 -4 6 939 1045 248 27 66 chr5 46418303 46418746 -106118513 - L1MA5 LINE L1 -473 5827 5392 6 939 334 293 0 0 chr5 46419005 46419087 -106118172 + ID4_ SINE ID 2 83 0 6 939 327 361 98 9 chr5 46419092 46419307 -106117952 + L1ME3A LINE L1 5862 6095 -78 6 939 284 217 0 0 chr5 46419628 46419688 -106117571 - L1MA5 LINE L1 -63 6237 6178 6 939 247 321 25 0 chr5 46419977 46420058 -106117201 - LTR16C LTR ERVL -17 472 390 6 939 21 36 0 0 chr5 46420510 46420538 -106116721 + AT_rich Low_complexity Low_complexity 1 28 0 6 939 6313 135 15 12 chr5 46420957 46421972 -106115287 - Lx2B LINE L1 -3 6997 5980 6 939 789 236 190 22 chr5 46423476 46423792 -106113467 + ORR1D2 LTR MaLR 1 369 -1 6 939 332 236 14 21 chr5 46425132 46425275 -106111984 + CT-rich Low_complexity Low_complexity 3 144 0 6 939 243 409 39 5 chr5 46425312 46425516 -106111743 + L2a LINE L2 2957 3167 -259 6 939 343 324 104 18 chr5 46425947 46426167 -106111092 - MIR SINE MIR -1 261 23 6 939 28 0 0 0 chr5 46426423 46426451 -106110808 + AT_rich Low_complexity Low_complexity 1 28 0 6 939 288 0 0 0 chr5 46427704 46427736 -106109523 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 939 235 310 0 44 chr5 46427803 46427894 -106109365 + MLT1F2 LTR MaLR 318 404 -4 6 939 350 289 282 0 chr5 46428108 46428250 -106109009 - B3A SINE B2 -16 182 1 6 939 29 0 0 0 chr5 46428878 46428907 -106108352 + AT_rich Low_complexity Low_complexity 1 29 0 6 939 27 0 0 0 chr5 46428944 46428971 -106108288 + AT_rich Low_complexity Low_complexity 1 27 0 6 939 375 60 0 0 chr5 46429021 46429071 -106108188 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 939 198 0 0 0 chr5 46429071 46429092 -106108167 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 939 256 284 57 49 chr5 46429884 46430006 -106107253 + MLT1F2 LTR MaLR 436 558 -2 6 939 434 315 134 33 chr5 46430158 46430493 -106106766 + L1ME3B LINE L1 5607 5975 -265 6 939 772 206 7 7 chr5 46431054 46431201 -106106058 + ORR1D2 LTR MaLR 3 149 -221 6 939 216 0 0 0 chr5 46432577 46432601 -106104658 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 939 1903 175 31 51 chr5 46432937 46433329 -106103930 + ORR1C2 LTR MaLR 1 384 0 6 939 21 0 0 0 chr5 46434285 46434306 -106102953 + AT_rich Low_complexity Low_complexity 1 21 0 6 939 293 282 102 24 chr5 46435200 46435327 -106101932 + MER103 DNA DNA 30 166 0 6 939 412 243 28 37 chr5 46435326 46435433 -106101826 - ID_B1 SINE B4 -1 223 118 6 939 1606 202 65 11 chr5 46435443 46435794 -106101465 + ORR1D2 LTR MaLR 1 370 0 6 939 258 275 36 48 chr5 46435794 46435878 -106101381 - ID_B1 SINE B4 -56 168 86 6 939 188 381 50 8 chr5 46436310 46436429 -106100830 + MIRb SINE MIR 84 207 -61 6 939 245 323 46 100 chr5 46436689 46436930 -106100329 + L2a LINE L2 3114 3341 -85 6 939 485 326 124 40 chr5 46437773 46438048 -106099211 + MLT1K LTR MaLR 298 595 0 6 939 1018 190 28 202 chr5 46439040 46439575 -106097684 - Lx9 LINE L1 -7 7637 7196 6 939 12656 92 33 10 chr5 46439665 46442525 -106094734 - L1VL2 LINE L1 -633 2982 51 6 939 273 216 0 0 chr5 46442522 46442573 -106094686 - Lx9 LINE L1 -435 7209 7159 6 939 268 278 32 32 chr5 46442808 46442901 -106094358 + L2 LINE L2 2741 2833 -586 6 939 4235 82 7 0 chr5 46442909 46443469 -106093790 + Lx3_Mus LINE L1 6446 7009 0 6 939 190 306 135 65 chr5 46443484 46443729 -106093530 + L2 LINE L2 2808 3069 -350 6 939 423 336 81 40 chr5 46443765 46443988 -106093271 + MLT1D LTR MaLR 1 232 -273 6 939 825 11 0 0 chr5 46444618 46444712 -106092547 + (GA)n Simple_repeat Simple_repeat 1 94 0 6 939 287 284 0 0 chr5 46444753 46444820 -106092439 - B4A SINE B4 -8 284 218 6 939 341 355 83 0 chr5 46444872 46444993 -106092266 - RSINE1 SINE B4 -24 141 11 6 939 757 299 38 9 chr5 46444991 46445204 -106092055 - B4A SINE B4 -52 240 22 6 939 252 301 92 42 chr5 46446795 46446937 -106090322 + MTEb LTR MaLR 231 379 0 6 939 307 269 141 18 chr5 46447412 46447582 -106089677 - L1MEg LINE L1 -4661 1423 1233 6 939 294 316 25 0 chr5 46448139 46448218 -106089041 + ID4_ SINE ID 2 82 -1 6 939 486 0 0 0 chr5 46448293 46448347 -106088912 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 939 446 132 74 34 chr5 46448753 46448902 -106088357 - Lx9 LINE L1 -1 7643 7489 6 939 2631 186 40 2 chr5 46448929 46449409 -106087850 - Lx4A LINE L1 -7 7051 6554 6 939 589 190 72 7 chr5 46449410 46449548 -106087711 - Lx9 LINE L1 -182 7462 7316 6 939 187 320 0 0 chr5 46449563 46449613 -106087646 + MIRb SINE MIR 207 256 -12 6 939 1056 60 0 0 chr5 46449721 46449855 -106087404 - B1_Mm SINE Alu -6 141 8 6 939 751 342 114 43 chr5 46451128 46451618 -106085641 - MLT1F2 LTR MaLR -8 619 1 6 939 304 345 0 0 chr5 46452210 46452297 -106084962 - MER102a DNA MER1_type -127 203 117 6 939 21 0 0 0 chr5 46452297 46452318 -106084941 + AT_rich Low_complexity Low_complexity 1 21 0 6 939 3181 46 5 10 chr5 46453194 46453592 -106083667 - MTA_Mm LTR MaLR 0 396 1 6 939 279 282 127 0 chr5 46454551 46454622 -106082637 + ID4_ SINE ID 1 80 -3 6 939 21 0 0 0 chr5 46455219 46455240 -106082019 + AT_rich Low_complexity Low_complexity 1 21 0 6 939 303 354 57 73 chr5 46455325 46455517 -106081742 + MIRb SINE MIR 52 240 -28 6 939 1087 228 11 19 chr5 46456045 46456305 -106080954 + Lx7 LINE L1 6131 6388 -1308 6 939 3828 140 9 25 chr5 46456324 46456967 -106080292 - Lx2B LINE L1 -10 6990 6358 6 939 613 161 80 0 chr5 46456967 46457104 -106080155 - Lx5 LINE L1 0 7050 6903 6 939 257 276 69 39 chr5 46457132 46457234 -106080025 + MIRb SINE MIR 2 106 -162 6 939 223 352 73 81 chr5 46458011 46458319 -106078940 - L2a LINE L2 -26 3400 3050 6 939 546 167 0 0 chr5 46459109 46459193 -106078066 + RSINE1 SINE B4 6 89 -76 6 939 21898 12 0 0 chr5 46459331 46462638 -106074621 - L1Md_A LINE L1 0 6582 3276 6 939 1414 71 25 0 chr5 46462941 46463138 -106074121 - L1_Mus2 LINE L1 0 6566 6365 6 939 22 0 0 0 chr5 46463417 46463439 -106073820 + AT_rich Low_complexity Low_complexity 1 22 0 6 939 269 299 170 75 chr5 46464077 46464265 -106072994 - MLT1J LTR MaLR -47 397 192 6 939 393 336 10 0 chr5 46464588 46464692 -106072567 - MLT1J LTR MaLR -313 199 95 6 939 233 212 138 26 chr5 46464692 46464808 -106072451 - L1MCb LINE L1 -5461 1290 1162 6 939 1420 275 76 2 chr5 46464957 46465420 -106071839 - Lx7 LINE L1 -333 7363 6867 6 939 451 341 88 15 chr5 46465424 46465686 -106071573 - L1MCb LINE L1 -4971 1074 794 6 939 189 0 0 0 chr5 46465686 46465707 -106071552 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 6 939 378 171 0 0 chr5 46465886 46465956 -106071303 + CT-rich Low_complexity Low_complexity 3 72 0 6 939 2058 109 49 44 chr5 46465962 46466347 -106070912 - Lx LINE L1 -25 6629 6243 6 939 254 339 121 24 chr5 46466454 46466792 -106070467 - L1MCb LINE L1 -6053 698 328 6 939 925 125 0 18 chr5 46466795 46466958 -106070301 + (TTTTC)n Simple_repeat Simple_repeat 3 162 0 6 939 533 386 77 27 chr5 46468165 46468604 -106068655 - LTR16B2 LTR ERVL 0 462 2 6 939 620 267 82 25 chr5 46468808 46469004 -106068255 + B4 SINE B4 5 211 -81 6 939 405 0 0 0 chr5 46469004 46469049 -106068210 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 939 7638 71 3 5 chr5 46469556 46470609 -106066650 + L1_Mus3 LINE L1 5588 6638 0 6 939 262 200 0 0 chr5 46470998 46471048 -106066211 - L1MC1 LINE L1 -53 6280 6231 6 939 341 149 15 0 chr5 46471945 46472012 -106065247 + GA-rich Low_complexity Low_complexity 3 70 0 6 939 4231 40 77 2 chr5 46472303 46472824 -106064435 + LTRIS2 LTR ERV1 5 564 0 6 939 187 333 24 49 chr5 46473262 46473344 -106063915 - L2b LINE L2 -50 3325 3246 6 939 453 36 0 0 chr5 46473626 46473681 -106063578 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 939 21 0 0 0 chr5 46475791 46475812 -106061447 + AT_rich Low_complexity Low_complexity 1 21 0 6 939 227 194 65 65 chr5 46476146 46476223 -106061036 - MIR SINE MIR -111 151 75 6 939 182 288 17 0 chr5 46476702 46476761 -106060498 + MIR SINE MIR 156 215 -47 6 939 235 280 147 18 chr5 46477118 46477227 -106060032 + B4A SINE B4 148 270 -22 6 939 495 0 0 0 chr5 46477254 46477309 -106059950 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 939 225 282 0 23 chr5 46478073 46478160 -106059099 - L1MB3 LINE L1 -56 6127 6043 6 939 26 50 0 0 chr5 46478566 46478606 -106058653 + AT_rich Low_complexity Low_complexity 1 40 0 6 939 358 301 310 16 chr5 46479066 46479324 -106057935 + MLT2B4 LTR ERVL 1 334 -80 6 939 285 200 56 45 chr5 46479326 46479415 -106057844 - MTEb LTR MaLR -2 377 288 6 939 576 0 0 0 chr5 46479690 46479754 -106057505 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 7 939 809 237 39 39 chr5 46479896 46480102 -106057157 - B3 SINE B2 -10 206 1 7 939 789 283 92 52 chr5 46480109 46480437 -106056822 + MTEa LTR MaLR 15 355 -24 7 939 261 0 0 0 chr5 46480540 46480569 -106056690 + (TACTG)n Simple_repeat Simple_repeat 2 30 0 7 939 228 262 53 61 chr5 46480630 46480744 -106056515 + MLT1A1 LTR MaLR 268 380 -28 7 939 536 260 23 8 chr5 46480809 46480937 -106056322 - RSINE1 SINE B4 -33 132 3 7 939 186 288 30 15 chr5 46481287 46481354 -106055905 + L2b LINE L2 3308 3375 0 7 939 235 214 43 0 chr5 46481994 46482064 -106055195 + (TCTG)n Simple_repeat Simple_repeat 4 76 0 7 939 419 275 27 52 chr5 46482073 46482177 -106055082 - B4 SINE B4 -12 280 201 7 939 312 27 0 0 chr5 46482177 46482214 -106055045 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 7 939 419 321 112 65 chr5 46482214 46482401 -106054858 - B4 SINE B4 -92 200 10 7 939 697 147 0 53 chr5 46482903 46483090 -106054169 + CT-rich Low_complexity Low_complexity 1 177 0 7 939 990 123 6 16 chr5 46483098 46483280 -106053979 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 939 251 287 168 15 chr5 46483725 46483856 -106053403 + L2c LINE L2 3235 3385 -2 7 939 677 206 63 5 chr5 46484439 46484629 -106052630 + Charlie5 DNA MER1_type 2402 2602 -22 7 939 2206 132 80 0 chr5 46484742 46485107 -106052152 + ORR1B1 LTR MaLR 1 394 0 7 939 1826 255 92 33 chr5 46487445 46488175 -106049084 + Lx9 LINE L1 6865 7637 -7 7 939 648 0 0 0 chr5 46488176 46488248 -106049011 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 939 22 35 0 0 chr5 46488639 46488668 -106048591 + AT_rich Low_complexity Low_complexity 1 29 0 7 939 304 345 27 43 chr5 46488675 46489047 -106048212 - L1MA4A LINE L1 -24 6279 5914 7 939 389 327 74 39 chr5 46489243 46489526 -106047733 + MER58B DNA MER1_type 49 341 0 7 939 15933 41 4 1 chr5 46490279 46492323 -106044936 - L1Md_F2 LINE L1 -213 5670 3620 7 939 7707 35 0 1 chr5 46492323 46493231 -106044028 + L1Md_F2 LINE L1 5664 6570 -12 7 939 1386 66 6 6 chr5 46493243 46493426 -106043833 + B2_Mm1t SINE B2 2 184 -9 7 939 23 33 0 0 chr5 46493428 46493458 -106043801 + AT_rich Low_complexity Low_complexity 1 30 0 7 939 564 308 6 0 chr5 46494543 46494712 -106042547 + MER3 DNA MER1_type 35 204 -5 7 939 493 326 70 25 chr5 46494898 46495099 -106042160 - MLT1I LTR MaLR -1 410 201 7 939 271 286 160 20 chr5 46495323 46495473 -106041786 + L2 LINE L2 2699 2869 -550 7 939 244 236 6 18 chr5 46495523 46495589 -106041670 + MIRm SINE MIR 68 140 -136 7 939 344 276 174 0 chr5 46496444 46496542 -106040717 + PB1D10 SINE Alu 1 115 -2 7 939 25 31 0 0 chr5 46496650 46496682 -106040577 + AT_rich Low_complexity Low_complexity 1 32 0 7 939 526 181 0 0 chr5 46498262 46498356 -106038903 - 4.5SRNA scRNA scRNA 0 94 1 7 939 451 171 211 0 chr5 46498356 46498479 -106038780 + Lx5 LINE L1 6895 7043 -7 7 939 1169 112 33 17 chr5 46500137 46500318 -106036941 - B2_Mm1t SINE B2 -8 185 2 1 939 220 331 80 49 chr5 46500540 46500702 -106036557 - L2b LINE L2 -166 3221 3053 2 939 864 219 52 5 chr5 46501170 46501363 -106035896 + B3 SINE B2 3 204 -12 3 939 1233 125 14 24 chr5 46501765 46501978 -106035281 - Lx2 LINE L1 -12 6985 6775 4 939 467 120 0 13 chr5 46501978 46502054 -106035205 - Lx2 LINE L1 -354 6643 6569 4 939 449 46 0 58 chr5 46502055 46502124 -106035135 - Lx2 LINE L1 -551 6103 6045 4 939 26 30 0 0 chr5 46502345 46502378 -106034881 + AT_rich Low_complexity Low_complexity 1 33 0 5 939 654 13 0 0 chr5 46502578 46502653 -106034606 + (CA)n Simple_repeat Simple_repeat 2 76 0 6 939 2307 106 32 15 chr5 46503270 46503671 -106033588 - L1_Mur2 LINE L1 -1147 4730 4323 7 939 1172 238 88 57 chr5 46503667 46503880 -106033379 + Lx5 LINE L1 6582 6811 -239 8 939 180 0 0 0 chr5 46503880 46503900 -106033359 + (CCTG)n Simple_repeat Simple_repeat 3 22 0 9 939 1172 238 88 57 chr5 46503900 46504141 -106033118 + Lx5 LINE L1 6812 7049 -1 8 939 216 0 0 0 chr5 46504147 46504171 -106033088 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1 939 931 159 0 0 chr5 46504878 46505023 -106032236 + B1_Mur4 SINE Alu 1 145 -5 1 939 576 65 0 0 chr5 46505144 46505221 -106032038 + (TCTA)n Simple_repeat Simple_repeat 3 79 0 1 939 548 348 0 6 chr5 46505237 46505393 -106031866 - RSINE1 SINE B4 0 165 11 1 939 184 373 14 87 chr5 46505430 46505568 -106031691 - MIR3 SINE MIR -66 142 15 1 939 28 29 0 0 chr5 46506388 46506423 -106030836 + AT_rich Low_complexity Low_complexity 1 35 0 1 939 230 250 31 0 chr5 46506780 46506844 -106030415 - RMER5 LTR ERV1 -436 98 33 1 939 950 271 55 33 chr5 46506890 46507344 -106029915 - L1MC3 LINE L1 -283 7677 7214 1 939 403 362 136 30 chr5 46507391 46507721 -106029538 - MLT1A0 LTR MaLR 0 365 1 1 939 1458 294 78 63 chr5 46507742 46508044 -106029215 - L1MC3 LINE L1 -833 7127 6824 1 939 531 45 0 0 chr5 46508044 46508110 -106029149 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 939 1458 294 78 63 chr5 46508110 46508283 -106028976 - L1MC3 LINE L1 -1137 6823 6627 1 939 629 243 57 36 chr5 46508283 46508475 -106028784 + B3A SINE B2 3 198 0 2 939 1458 294 78 63 chr5 46508475 46509194 -106028065 - L1MC3 LINE L1 -1334 6626 5916 1 939 412 283 134 15 chr5 46509538 46509807 -106027452 - L1MC3 LINE L1 -1297 5024 4724 1 939 619 78 10 10 chr5 46509849 46509953 -106027306 + (TA)n Simple_repeat Simple_repeat 1 104 0 2 939 7344 54 3 22 chr5 46510101 46511104 -106026155 - L1Md_F2 LINE L1 -4 6578 5595 2 939 442 311 83 62 chr5 46511203 46511734 -106025525 - L1MC3 LINE L1 -2010 4311 3770 1 939 1231 195 34 34 chr5 46511798 46512064 -106025195 + ORR1B1 LTR MaLR 129 394 0 2 939 182 208 19 0 chr5 46512073 46512126 -106025133 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 939 700 298 18 65 chr5 46512129 46512470 -106024789 - Lx8 LINE L1 -21 7452 7128 2 939 1096 290 120 29 chr5 46512472 46513703 -106023556 - L1MC3 LINE L1 -2537 3784 2442 1 939 378 0 0 0 chr5 46513740 46513782 -106023477 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 939 477 0 0 0 chr5 46513787 46513840 -106023419 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 939 1659 47 0 40 chr5 46513990 46514264 -106022995 - L1Md_F3 LINE L1 0 6584 6358 2 939 21 36 0 0 chr5 46514628 46514656 -106022603 + AT_rich Low_complexity Low_complexity 1 28 0 2 939 226 325 100 32 chr5 46514775 46515214 -106022045 - L1MC3 LINE L1 -5137 1371 903 1 939 231 309 29 49 chr5 46515370 46515472 -106021787 + MLT1C LTR MaLR 350 449 -18 3 939 1221 48 7 0 chr5 46515768 46515914 -106021345 + B1_Mus1 SINE Alu 2 148 0 3 939 367 360 40 13 chr5 46516492 46516641 -106020618 - MLT2B4 LTR ERVL -382 174 22 3 939 410 0 20 0 chr5 46516642 46516692 -106020567 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 939 22 0 0 0 chr5 46517574 46517596 -106019663 + AT_rich Low_complexity Low_complexity 1 22 0 3 939 525 332 88 90 chr5 46517617 46518004 -106019255 + MLT1B LTR MaLR 1 386 -4 3 939 4238 42 2 25 chr5 46518180 46518711 -106018548 - MURVY-LTR LTR ERV1 0 519 1 3 939 22 56 0 0 chr5 46519522 46519558 -106017701 + AT_rich Low_complexity Low_complexity 1 36 0 3 939 1107 284 18 3 chr5 46519660 46519946 -106017313 - B4A SINE B4 -2 290 1 3 939 241 305 92 31 chr5 46520712 46520810 -106016449 - MIR SINE MIR -1 261 158 3 939 188 135 27 0 chr5 46521582 46521619 -106015640 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 939 255 268 62 0 chr5 46521641 46521738 -106015521 - L1MA5 LINE L1 -17 6283 6181 4 939 198 250 0 0 chr5 46522539 46522611 -106014648 + CT-rich Low_complexity Low_complexity 4 75 0 4 939 33 43 0 0 chr5 46523840 46523887 -106013372 + AT_rich Low_complexity Low_complexity 1 47 0 4 939 226 380 13 87 chr5 46524444 46524594 -106012665 + MIR3 SINE MIR 10 148 -60 4 939 1241 263 161 52 chr5 46524775 46525328 -106011931 - Lx6 LINE L1 -28 7432 6820 4 939 722 314 45 10 chr5 46525355 46525664 -106011595 - Lx5 LINE L1 -686 6364 6045 4 939 520 284 130 73 chr5 46525873 46526435 -106010824 + L1ME3A LINE L1 5559 6152 -21 4 939 546 16 0 0 chr5 46527518 46527581 -106009678 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 939 198 0 0 0 chr5 46527889 46527911 -106009348 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 939 227 274 57 43 chr5 46528235 46528376 -106008883 + Lx8 LINE L1 7260 7402 -71 5 939 25 51 0 0 chr5 46529433 46529472 -106007787 + AT_rich Low_complexity Low_complexity 1 39 0 5 939 513 0 0 0 chr5 46529728 46529785 -106007474 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 5 940 210 191 0 0 chr5 46530924 46530966 -106006293 + GA-rich Low_complexity Low_complexity 4 45 0 5 940 347 299 131 0 chr5 46530969 46531106 -106006153 + HAL1-3A_ME LINE L1 2285 2439 -419 5 940 509 330 122 10 chr5 46531580 46532088 -106005171 + L1MB8 LINE L1 5411 5975 -203 5 940 7303 46 18 20 chr5 46532218 46533198 -106004061 + L1_Mus1 LINE L1 5588 6565 -2 5 940 1259 198 12 61 chr5 46533238 46533583 -106003676 - Lx2B LINE L1 -18 6982 6655 5 940 25 31 0 0 chr5 46533626 46533658 -106003601 + AT_rich Low_complexity Low_complexity 1 32 0 5 940 4945 203 98 19 chr5 46533721 46534787 -106002472 + Lx7 LINE L1 6401 7534 -162 5 940 213 94 0 0 chr5 46534787 46534819 -106002440 + (TTA)n Simple_repeat Simple_repeat 2 33 0 6 940 4945 203 98 19 chr5 46534819 46534948 -106002311 + Lx7 LINE L1 7535 7689 -7 5 940 237 326 20 94 chr5 46535731 46535880 -106001379 + MIR SINE MIR 17 154 -108 6 940 21 57 0 0 chr5 46535888 46535923 -106001336 + AT_rich Low_complexity Low_complexity 1 35 0 6 940 376 198 113 10 chr5 46536101 46536198 -106001061 - Lx9 LINE L1 -953 6691 6585 6 940 598 312 140 18 chr5 46536258 46536486 -106000773 - B4 SINE B4 -8 284 29 6 940 786 117 0 0 chr5 46536597 46536717 -106000542 + (TA)n Simple_repeat Simple_repeat 2 121 0 6 940 205 343 96 7 chr5 46537287 46537422 -105999837 - MIRb SINE MIR -100 168 22 6 940 729 195 165 25 chr5 46537734 46537971 -105999288 + Lx7 LINE L1 7427 7696 0 6 940 249 206 0 0 chr5 46537963 46538026 -105999233 + L1_Mur3 LINE L1 2078 2140 -3740 6 940 406 304 18 0 chr5 46538267 46538379 -105998880 + MTE2b LTR MaLR 1 114 -265 6 940 2007 320 61 30 chr5 46538413 46539488 -105997771 - Lx8 LINE L1 -6 7467 6359 7 940 1528 74 23 0 chr5 46540543 46540760 -105996499 + Lx3_Mus LINE L1 6788 7009 0 7 940 26 0 0 0 chr5 46542839 46542865 -105994394 + AT_rich Low_complexity Low_complexity 1 26 0 7 940 221 204 0 39 chr5 46543449 46543500 -105993759 + (GGGTG)n Simple_repeat Simple_repeat 3 51 0 7 940 275 0 29 0 chr5 46543906 46543941 -105993318 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 940 3262 38 5 5 chr5 46544312 46544708 -105992551 + MTA_Mm LTR MaLR 1 396 0 7 940 733 330 92 4 chr5 46544930 46545192 -105992067 - LTR40a LTR ERVL -234 285 1 7 940 183 233 105 53 chr5 46545412 46545507 -105991752 + L3 LINE CR1 4210 4309 -180 7 940 23 54 0 0 chr5 46546160 46546197 -105991062 + AT_rich Low_complexity Low_complexity 1 37 0 7 940 354 190 0 0 chr5 46546726 46546784 -105990475 + RLTR28 LTR ERVL 1 58 -423 7 940 2326 171 6 60 chr5 46546785 46547269 -105989990 - RMER1B Other Other -11 1055 598 8 940 2042 167 87 5 chr5 46547294 46547721 -105989538 + RLTR28 LTR ERVL 47 508 -16 7 940 587 246 71 0 chr5 46547790 46547916 -105989343 + B1_Mur1 SINE Alu 1 135 -14 8 940 602 104 10 0 chr5 46548026 46548122 -105989137 + (GGA)n Simple_repeat Simple_repeat 2 98 0 8 940 22 35 0 0 chr5 46548687 46548716 -105988543 + AT_rich Low_complexity Low_complexity 1 29 0 8 940 231 306 180 92 chr5 46548925 46549220 -105988039 - MLT1H LTR MaLR -192 357 37 8 940 525 334 75 57 chr5 46550203 46550552 -105986707 - ORR1E LTR MaLR -2 357 3 8 940 3286 209 53 53 chr5 46550572 46551284 -105985975 + RMER19B LTR ERVK 1 712 -190 8 940 625 154 0 0 chr5 46551274 46551378 -105985881 - RMER19B LTR ERVK -798 104 1 8 940 21 0 0 0 chr5 46551848 46551869 -105985390 + AT_rich Low_complexity Low_complexity 1 21 0 8 940 184 322 38 12 chr5 46551918 46552000 -105985259 - MIRm SINE MIR -180 82 4 8 940 201 313 72 107 chr5 46552547 46552762 -105984497 + MIRb SINE MIR 6 218 -50 9 940 3544 127 4 18 chr5 46554058 46554603 -105982656 + Lx2B LINE L1 6460 6996 -4 9 940 268 308 79 43 chr5 46554835 46554974 -105982285 - MIRb SINE MIR -32 236 93 9 940 478 316 84 30 chr5 46555010 46555212 -105982047 - MER58A DNA MER1_type -10 214 2 9 940 540 0 0 0 chr5 46555503 46555563 -105981696 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 940 394 354 27 13 chr5 46555786 46555935 -105981324 - LTR31 LTR ERV1 -258 361 211 9 940 181 30 0 83 chr5 46556439 46556475 -105980784 + (TAA)n Simple_repeat Simple_repeat 1 33 0 9 940 21 36 0 0 chr5 46556493 46556521 -105980738 + AT_rich Low_complexity Low_complexity 1 28 0 9 940 207 196 0 0 chr5 46556717 46556763 -105980496 + (TAA)n Simple_repeat Simple_repeat 1 46 0 9 940 875 349 50 26 chr5 46557773 46558232 -105979027 + Lx8 LINE L1 6871 7340 -133 9 940 281 315 53 38 chr5 46559676 46559791 -105977468 + MLT1H LTR MaLR 46 162 -387 1 940 994 296 40 25 chr5 46559791 46560243 -105977016 + MER89 LTR ERV1 1 556 -3 1 940 1180 101 67 0 chr5 46563237 46563415 -105973844 - B2_Mm2 SINE B2 -4 191 2 1 940 517 164 7 60 chr5 46564705 46564854 -105972405 + Lx2 LINE L1 6855 6995 -2 1 940 1095 242 60 25 chr5 46565139 46565453 -105971806 - ORR1D1 LTR MaLR -8 366 42 1 940 396 40 0 0 chr5 46566647 46566697 -105970562 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 940 243 345 122 11 chr5 46566889 46567022 -105970237 + MIRb SINE MIR 2 152 -116 1 940 937 299 5 0 chr5 46567598 46567812 -105969447 + RMER1C Other Other 389 603 -739 1 940 1883 171 3 55 chr5 46567813 46568177 -105969082 - ORR1B1 LTR MaLR -9 385 41 1 940 2129 176 74 82 chr5 46568184 46568686 -105968573 - ORR1B1-int LTR MaLR 0 1509 1012 1 940 2484 189 48 24 chr5 46568688 46569225 -105968034 + RMER1C Other Other 792 1341 -1 1 940 395 270 40 40 chr5 46569782 46570006 -105967253 + MER33 DNA MER1_type 91 314 -10 1 940 603 308 0 0 chr5 46572519 46572662 -105964597 + ID_B1 SINE B4 81 223 -1 1 940 309 357 92 37 chr5 46572699 46573066 -105964193 - L2a LINE L2 -39 3387 2946 1 940 273 275 106 35 chr5 46573870 46573983 -105963276 + AmnSINE1 SINE SINE 173 293 -282 1 940 267 309 35 26 chr5 46574112 46574225 -105963034 + AmnSINE1 SINE SINE 462 575 0 1 940 447 19 0 0 chr5 46574459 46574511 -105962748 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 940 441 355 79 24 chr5 46574890 46575144 -105962115 - MLT1J LTR MaLR -7 505 238 1 940 915 78 0 0 chr5 46575153 46575282 -105961977 + (TTTC)n Simple_repeat Simple_repeat 4 132 0 1 940 429 20 0 0 chr5 46576642 46576692 -105960567 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 1 940 384 356 95 38 chr5 46576834 46577097 -105960162 + B4 SINE B4 2 279 -13 1 940 813 233 9 47 chr5 46579050 46579262 -105957997 + B3 SINE B2 1 204 -12 1 940 284 324 18 18 chr5 46580167 46580277 -105956982 - MER58A DNA MER1_type -30 194 85 1 940 1250 222 171 3 chr5 46581095 46581411 -105955848 - ORR1D1 LTR MaLR 0 374 6 1 940 252 328 45 22 chr5 46581694 46581828 -105955431 + L1MEc LINE L1 362 498 -5902 1 940 230 328 24 0 chr5 46581990 46582115 -105955144 + L1MEc LINE L1 687 814 -5586 1 940 211 254 0 0 chr5 46582317 46582376 -105954883 + (CCA)n Simple_repeat Simple_repeat 2 60 0 1 940 513 0 0 0 chr5 46582376 46582433 -105954826 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 1 940 399 308 84 8 chr5 46582582 46582821 -105954438 + L1MEc LINE L1 1025 1281 -5119 1 940 261 262 177 24 chr5 46582837 46583105 -105954154 + L1MEc LINE L1 1339 1699 -4716 1 940 288 318 85 40 chr5 46583321 46583698 -105953561 + L1MEc LINE L1 1690 2083 -4317 1 940 350 264 114 24 chr5 46583865 46584024 -105953235 - ORR1D2 LTR MaLR 0 379 216 1 940 1661 243 85 17 chr5 46584035 46584508 -105952751 + Lx7 LINE L1 6913 7417 -279 1 940 319 216 29 98 chr5 46584541 46584611 -105952648 + Lx7 LINE L1 7506 7571 -125 1 940 471 35 0 0 chr5 46584611 46584668 -105952591 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 940 319 216 29 98 chr5 46584668 46584802 -105952457 + Lx7 LINE L1 7572 7696 0 1 940 248 200 62 21 chr5 46584803 46584900 -105952359 + L1MEc LINE L1 2448 2548 -3771 1 940 3892 16 9 0 chr5 46584912 46585360 -105951899 + L1Md_A LINE L1 6129 6580 -2 1 940 363 309 36 9 chr5 46585450 46585561 -105951698 + B1F SINE Alu 5 118 -31 1 940 236 319 0 0 chr5 46585599 46585668 -105951591 + ID4 SINE ID 2 70 -13 1 940 241 167 111 0 chr5 46585709 46585763 -105951496 + L1M4 LINE L1 2771 2830 -3316 1 940 3461 34 2 0 chr5 46585801 46586216 -105951043 + L1Md_T LINE L1 6165 6580 -2 1 940 234 116 0 0 chr5 46586225 46586268 -105950991 + (A)n Simple_repeat Simple_repeat 1 43 0 1 940 4255 37 0 12 chr5 46586291 46586805 -105950454 - L1_Mus1 LINE L1 -1 6566 6059 1 940 24 53 0 0 chr5 46586851 46586889 -105950370 + AT_rich Low_complexity Low_complexity 1 38 0 1 940 371 284 140 40 chr5 46586911 46587340 -105949919 + L1MD LINE L1 2955 3426 -2720 1 940 1944 240 45 17 chr5 46587437 46588033 -105949226 - Lx6 LINE L1 -874 6586 5728 1 940 8997 136 29 8 chr5 46588036 46589019 -105948240 - Lx4A LINE L1 -1 7057 6066 1 940 375 23 0 0 chr5 46589019 46589063 -105948196 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 1 940 8997 131 27 10 chr5 46589063 46589585 -105947674 - Lx4A LINE L1 -993 6065 5514 1 940 1350 290 57 9 chr5 46589624 46590080 -105947179 + Lx6 LINE L1 6955 7432 -28 1 940 278 278 73 95 chr5 46590503 46590682 -105946577 - ORR1E LTR MaLR -166 193 19 1 940 568 303 85 22 chr5 46590759 46591145 -105946114 + L1MD LINE L1 3765 4181 -1965 1 940 477 348 26 40 chr5 46591165 46591371 -105945888 + MLT1A0 LTR MaLR 4 203 -205 1 940 711 35 0 0 chr5 46591371 46591457 -105945802 + (TC)n Simple_repeat Simple_repeat 1 86 0 1 940 510 31 0 0 chr5 46591457 46591520 -105945739 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 940 464 361 4 18 chr5 46591520 46591727 -105945532 + MLT1A0 LTR MaLR 204 404 -4 1 940 24 67 0 0 chr5 46591748 46591793 -105945466 + AT_rich Low_complexity Low_complexity 1 45 0 1 940 323 326 94 77 chr5 46591821 46592107 -105945152 + B4 SINE B4 2 292 0 1 940 239 114 23 0 chr5 46592116 46592160 -105945099 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 940 183 80 0 0 chr5 46592268 46592293 -105944966 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 940 22 0 0 0 chr5 46594511 46594533 -105942726 + AT_rich Low_complexity Low_complexity 1 22 0 1 940 234 326 112 0 chr5 46594533 46594631 -105942628 - PB1D10 SINE Alu -7 110 2 1 940 183 42 0 0 chr5 46595284 46595308 -105941951 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 940 527 304 49 22 chr5 46595837 46596022 -105941237 + ID_B1 SINE B4 3 192 -32 1 940 3389 85 4 16 chr5 46597268 46597759 -105939500 - Lx LINE L1 -1 6653 6169 1 940 335 294 161 78 chr5 46598243 46598652 -105938607 + LTR55 LTR ERV 10 452 -96 1 940 359 296 44 22 chr5 46600405 46600540 -105936719 + MIRb SINE MIR 97 234 -34 1 940 236 264 230 26 chr5 46602451 46602564 -105934695 + MLT1J2 LTR MaLR 47 182 -266 1 940 790 280 63 61 chr5 46602835 46602894 -105934365 - L1MA8 LINE L1 -17 6274 6217 1 940 1131 71 0 0 chr5 46602894 46603035 -105934224 + B1_Mus1 SINE Alu 3 143 -5 1 940 790 280 63 61 chr5 46603035 46603496 -105933763 - L1MA8 LINE L1 -75 6216 5753 1 940 405 0 0 0 chr5 46603723 46603768 -105933491 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 940 333 349 0 9 chr5 46604813 46604923 -105932336 - MLT1D LTR MaLR -64 441 333 1 940 333 0 0 0 chr5 46605279 46605316 -105931943 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 940 642 341 180 19 chr5 46605404 46605446 -105931813 - MER21B LTR ERV1 -51 812 765 1 940 414 0 0 0 chr5 46605446 46605492 -105931767 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 940 642 341 180 19 chr5 46605492 46605933 -105931326 - MER21B LTR ERV1 -99 764 251 1 940 1071 116 0 0 chr5 46606070 46606217 -105931042 + B1_Mus1 SINE Alu 2 148 0 1 940 266 273 15 15 chr5 46606366 46606433 -105930826 - MER21B LTR ERV1 -796 67 1 1 940 275 355 75 24 chr5 46607030 46607223 -105930036 - MIRc SINE MIR 0 262 57 1 940 888 252 29 4 chr5 46608062 46608305 -105928954 - RCHARR1 DNA MER1_type -231 743 495 1 940 722 11 11 0 chr5 46609081 46609168 -105928091 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 940 263 349 15 0 chr5 46609843 46609909 -105927350 + MER81 DNA AcHobo 42 108 -6 1 940 192 77 0 0 chr5 46609988 46610014 -105927245 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 940 254 382 0 0 chr5 46610114 46610190 -105927069 + MER44B DNA MER2_type 1 75 -475 1 940 423 337 166 0 chr5 46610409 46610590 -105926669 + MER44B DNA MER2_type 89 299 -251 1 940 468 221 0 0 chr5 46610604 46610717 -105926542 + (TA)n Simple_repeat Simple_repeat 2 114 0 1 940 803 356 12 66 chr5 46611219 46611576 -105925683 - MTE-int LTR MaLR -1260 320 1 1 940 456 274 61 110 chr5 46611674 46611920 -105925339 - MTEb LTR MaLR -131 248 15 1 940 387 313 230 23 chr5 46613297 46613372 -105923887 - L1MDa LINE L1 -1156 5381 5298 1 940 221 0 0 33 chr5 46613372 46613402 -105923857 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 940 387 313 230 23 chr5 46613402 46613560 -105923699 - L1MDa LINE L1 -1240 5297 5101 1 940 1891 35 4 0 chr5 46613560 46613791 -105923468 - L1Md_F2 LINE L1 -3 6579 6348 1 940 387 313 230 23 chr5 46613791 46613861 -105923398 - L1MDa LINE L1 -1437 5100 4989 1 940 2809 50 0 8 chr5 46613861 46614220 -105923039 - L1_Mus1 LINE L1 0 6567 6212 1 940 387 313 230 23 chr5 46614220 46614513 -105922746 - L1MDa LINE L1 -1549 4988 4660 1 940 877 300 75 106 chr5 46614552 46615785 -105921474 - L1MDa LINE L1 -4558 2075 881 1 940 259 174 0 0 chr5 46615841 46615887 -105921372 - L1MDa LINE L1 -6310 323 278 1 940 300 154 0 0 chr5 46616239 46616291 -105920968 + CT-rich Low_complexity Low_complexity 1 52 0 1 940 483 18 0 0 chr5 46616563 46616619 -105920640 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 940 180 0 0 0 chr5 46616620 46616640 -105920619 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 940 405 0 0 0 chr5 46618476 46618521 -105918738 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 940 459 0 0 0 chr5 46618521 46618571 -105918688 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 940 426 288 78 35 chr5 46618573 46618688 -105918571 - RSINE1 SINE B4 -14 151 32 1 940 327 317 97 35 chr5 46618799 46618943 -105918316 + MIRc SINE MIR 70 222 -46 1 940 185 277 41 41 chr5 46619779 46619828 -105917431 - L2b LINE L2 -20 3355 3307 1 940 226 292 129 56 chr5 46619878 46620056 -105917203 + MER3 DNA MER1_type 13 203 -6 1 940 349 132 0 0 chr5 46621806 46621859 -105915400 + RMER19A LTR ERVK 1 53 -684 1 940 1449 276 67 12 chr5 46621907 46622416 -105914843 + Lx9 LINE L1 7088 7624 -20 1 940 219 95 114 0 chr5 46622438 46622543 -105914716 + (TA)n Simple_repeat Simple_repeat 1 117 0 1 940 1589 201 139 92 chr5 46622932 46623441 -105913818 + MT2A LTR ERVL 1 533 0 1 940 204 40 0 0 chr5 46624506 46624531 -105912728 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 1 940 532 260 0 0 chr5 46624532 46624632 -105912627 - B3 SINE B2 -17 199 100 1 940 328 364 34 17 chr5 46624634 46624813 -105912446 + MER2 DNA MER2_type 161 342 -3 1 940 605 313 59 14 chr5 46624897 46625117 -105912142 - MLT1D LTR MaLR -17 488 259 1 940 777 274 106 26 chr5 46625886 46626189 -105911070 - MER2 DNA MER2_type -1 344 18 1 940 25 65 0 0 chr5 46626651 46626697 -105910562 + AT_rich Low_complexity Low_complexity 1 46 0 1 940 509 0 16 0 chr5 46628308 46628369 -105908890 + (CATAA)n Simple_repeat Simple_repeat 1 62 0 1 940 285 89 0 0 chr5 46628882 46628927 -105908332 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 940 475 312 64 64 chr5 46629119 46629355 -105907904 - RMER15 LTR ERVL -15 560 325 1 940 287 277 55 92 chr5 46629377 46629540 -105907719 - RMER15 LTR ERVL -418 157 1 1 940 2052 300 41 55 chr5 46629540 46630351 -105906908 - RMER15-int LTR ERVL -26 4973 4175 1 940 1348 165 0 22 chr5 46630431 46630660 -105906599 - URR1A DNA MER1_type 0 226 3 2 940 2446 339 74 27 chr5 46630731 46631593 -105905666 - RMER15-int LTR ERVL -2775 2224 1276 1 940 2740 43 3 25 chr5 46631593 46631948 -105905311 - L1_Mus1 LINE L1 0 6567 6221 2 940 2446 336 81 35 chr5 46631948 46632712 -105904547 - RMER15-int LTR ERVL -3724 1275 484 1 940 235 229 0 0 chr5 46633809 46633857 -105903402 + Lx8 LINE L1 6870 6917 -556 2 940 631 278 104 41 chr5 46633949 46634219 -105903040 + Lx8 LINE L1 6980 7266 -207 2 940 356 364 6 0 chr5 46634786 46634948 -105902311 + CT-rich Low_complexity Low_complexity 2 164 0 2 940 37777 16 1 7 chr5 46634958 46640188 -105897071 + L1Md_A LINE L1 391 5585 -298 2 940 8620 21 1 0 chr5 46640189 46641184 -105896075 + L1Md_A LINE L1 5587 6582 0 2 940 630 268 0 7 chr5 46641397 46641536 -105895723 + B1_Mur2 SINE Alu 2 139 -10 2 940 873 331 75 49 chr5 46641735 46642202 -105895057 - MER67D LTR ERV1 -28 486 8 2 940 230 330 69 35 chr5 46642278 46642394 -105894865 - MLT1K LTR MaLR -43 552 433 2 940 21 0 0 0 chr5 46642775 46642796 -105894463 + AT_rich Low_complexity Low_complexity 1 21 0 2 940 225 128 0 0 chr5 46642947 46642994 -105894265 + (T)n Simple_repeat Simple_repeat 1 47 0 2 940 416 235 7 0 chr5 46643139 46643275 -105893984 + GA-rich Low_complexity Low_complexity 1 137 0 2 940 720 241 0 0 chr5 46643619 46643764 -105893495 - B1_Mus2 SINE Alu -1 146 2 2 940 248 346 27 63 chr5 46645049 46645160 -105892099 - MIRm SINE MIR -122 154 48 2 940 315 0 0 0 chr5 46645462 46645497 -105891762 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 940 255 289 11 11 chr5 46646476 46646567 -105890692 + CT-rich Low_complexity Low_complexity 3 93 0 2 940 4447 129 24 22 chr5 46649449 46650204 -105887055 + RMER6A LTR ERVK 1 756 0 2 940 584 331 18 0 chr5 46650639 46650805 -105886454 + B3A SINE B2 1 169 -29 2 940 1200 48 0 14 chr5 46650867 46651015 -105886244 - B1_Mm SINE Alu -1 146 1 2 940 250 305 106 116 chr5 46651106 46651295 -105885964 - MER20 DNA MER1_type -1 218 32 2 940 325 311 30 22 chr5 46651371 46651506 -105885753 - L1M5 LINE L1 -440 5684 5549 2 940 22 56 0 0 chr5 46651713 46651749 -105885510 + AT_rich Low_complexity Low_complexity 1 36 0 2 940 782 281 22 0 chr5 46651838 46652034 -105885225 - B3A SINE B2 -6 210 7 2 940 460 285 54 20 chr5 46652127 46652274 -105884985 - MTD LTR MaLR -260 159 8 2 940 218 381 68 65 chr5 46652276 46652568 -105884691 - L2b LINE L2 -165 3210 2918 2 940 1131 173 43 29 chr5 46652682 46652890 -105884369 + B3 SINE B2 6 216 0 2 940 584 230 7 29 chr5 46653943 46654082 -105883177 - B1_Mur1 SINE Alu -9 140 5 2 940 24 0 0 0 chr5 46654088 46654112 -105883147 + AT_rich Low_complexity Low_complexity 1 24 0 2 940 38471 36 9 1 chr5 46654112 46660170 -105877089 - L1Md_T LINE L1 0 6582 476 2 940 691 273 0 21 chr5 46660231 46660418 -105876841 - B3A SINE B2 -15 183 1 2 940 631 276 17 17 chr5 46660536 46660709 -105876550 - B3A SINE B2 -1 197 25 2 940 185 94 0 30 chr5 46661422 46661455 -105875804 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 2 117 819 292 146 32 chr5 46661455 46662011 -105875248 - L1MA8 LINE L1 -12 6279 5661 2 941 333 68 0 0 chr5 46662406 46662450 -105874809 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 2 941 261 358 43 12 chr5 46663839 46664003 -105873256 + MIR SINE MIR 86 254 -8 2 941 1503 179 29 7 chr5 46666537 46666818 -105870441 + RLTR25B LTR ERVK 3 289 -814 2 941 4629 56 0 0 chr5 46666819 46667424 -105869835 + L1Md_F2 LINE L1 4982 5586 -297 2 941 8085 44 3 0 chr5 46667424 46668405 -105868854 + L1Md_F2 LINE L1 5587 6570 -12 2 941 2691 164 84 11 chr5 46668406 46668944 -105868315 + RLTR25B LTR ERVK 270 846 -182 2 941 804 227 14 185 chr5 46669258 46669414 -105867845 + RLTR25B LTR ERVK 742 859 -169 2 941 396 0 0 0 chr5 46669414 46669458 -105867801 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 941 599 0 14 0 chr5 46669458 46669528 -105867731 + (GA)n Simple_repeat Simple_repeat 2 73 0 2 941 804 227 14 185 chr5 46669528 46669716 -105867543 + RLTR25B LTR ERVK 860 1027 -1 2 941 1410 174 187 37 chr5 46669748 46670149 -105867110 - RMER6B LTR ERVK 0 461 1 2 941 255 164 90 0 chr5 46671053 46671120 -105866139 + Ricksha_c DNA MuDR 374 446 -1602 2 941 977 119 6 0 chr5 46671310 46671470 -105865789 + (TTC)n Simple_repeat Simple_repeat 1 161 0 2 941 21 0 0 0 chr5 46671824 46671845 -105865414 + AT_rich Low_complexity Low_complexity 1 21 0 2 941 493 244 7 132 chr5 46671968 46672119 -105865140 + B3A SINE B2 5 136 -62 2 941 351 0 0 0 chr5 46672122 46672161 -105865098 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 941 354 258 6 22 chr5 46672683 46672865 -105864394 + (TA)n Simple_repeat Simple_repeat 1 179 0 2 941 590 272 99 24 chr5 46672913 46673328 -105863931 - L1M3c LINE L1 -2705 3499 3054 2 941 394 304 75 0 chr5 46673328 46673489 -105863770 - L1M4c LINE L1 -4807 1577 1405 2 941 308 305 86 35 chr5 46673518 46673618 -105863641 - L1M3c LINE L1 -4525 1616 1517 2 941 626 0 14 0 chr5 46673618 46673692 -105863567 + (TC)n Simple_repeat Simple_repeat 2 76 0 2 941 308 305 86 35 chr5 46673692 46673904 -105863355 - L1M3c LINE L1 -4625 1516 1289 2 941 1631 118 24 0 chr5 46673984 46674230 -105863029 - Lx LINE L1 -148 6506 6255 2 941 226 329 139 19 chr5 46674324 46674482 -105862777 - L1M3c LINE L1 -5116 1025 849 2 941 242 330 163 40 chr5 46674558 46674760 -105862499 - L1M3c LINE L1 -5434 707 481 2 941 612 87 0 0 chr5 46675065 46675157 -105862102 + (GA)n Simple_repeat Simple_repeat 1 92 0 2 941 6525 98 40 7 chr5 46675229 46676436 -105860823 - L1_Mus4 LINE L1 0 6636 5381 2 941 3105 37 0 0 chr5 46676436 46676790 -105860469 + IAPEY2_LTR LTR ERVK 1 354 -3 2 941 560 164 44 52 chr5 46676791 46676926 -105860333 + IAPLTR4_I LTR ERVK 47 180 -1290 2 941 8778 123 11 37 chr5 46676925 46678422 -105858837 + IAPEY3-int LTR ERVK 524 1982 -5698 2 941 3279 63 23 0 chr5 46678399 46678841 -105858418 + IAPEY3-int LTR ERVK 2238 2689 -4991 2 941 192 377 44 0 chr5 46678856 46678970 -105858289 + L3b LINE CR1 335 453 -29 2 941 2671 122 18 32 chr5 46678970 46679625 -105857634 + IAPEY3-int LTR ERVK 6984 7581 0 2 941 3083 42 0 0 chr5 46679625 46679982 -105857277 + IAPEY2_LTR LTR ERVK 1 357 0 2 941 1550 122 59 3 chr5 46679984 46680271 -105856988 - L1_Mur2 LINE L1 -499 5378 5076 2 941 5368 157 1 3 chr5 46680270 46681249 -105856010 + L1_Mm LINE L1 4097 5073 -810 2 941 318 277 0 24 chr5 46681277 46681362 -105855897 - MTE-int LTR MaLR -30 1550 1468 2 941 216 97 0 0 chr5 46681564 46681595 -105855664 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 2 941 4673 112 22 4 chr5 46681596 46682311 -105854948 - Lx3_Mus LINE L1 -19 6990 6263 2 941 714 321 190 59 chr5 46682313 46683028 -105854231 - MTE-int LTR MaLR -610 970 162 2 941 252 382 49 0 chr5 46683143 46683245 -105854014 - L1M3c LINE L1 -5808 333 227 2 941 631 307 54 91 chr5 46684004 46684377 -105852882 - ORR1E LTR MaLR 0 359 1 2 941 2334 75 119 11 chr5 46684475 46684827 -105852432 - RLTR10 LTR ERVK 0 390 1 2 941 14029 20 6 0 chr5 46684829 46686502 -105850757 - RLTR10-int LTR ERVK -3 1984 302 2 941 2334 75 119 11 chr5 46686502 46686854 -105850405 - RLTR10 LTR ERVK 0 390 1 2 941 3727 198 96 17 chr5 46688635 46689555 -105847704 - Lx7 LINE L1 0 7696 6705 2 941 546 43 0 0 chr5 46690304 46690373 -105846886 + (TGG)n Simple_repeat Simple_repeat 3 71 0 2 941 189 0 0 0 chr5 46690373 46690394 -105846865 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 941 1259 324 45 16 chr5 46690641 46691193 -105846066 - Lx8 LINE L1 -247 7226 6659 2 941 34470 60 5 2 chr5 46691512 46697518 -105839741 - L1Md_F3 LINE L1 0 6584 631 2 941 929 245 181 11 chr5 46697660 46698080 -105839179 - RMER15 LTR ERVL 0 575 27 2 941 449 62 15 0 chr5 46698117 46698182 -105839077 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 2 941 976 296 16 28 chr5 46698204 46698524 -105838735 - Lx5 LINE L1 0 7050 6735 2 941 268 276 55 87 chr5 46698524 46698651 -105838608 - RMER15 LTR ERVL -447 128 6 2 941 23 68 0 0 chr5 46699154 46699198 -105838061 + AT_rich Low_complexity Low_complexity 1 44 0 2 941 360 303 56 96 chr5 46699226 46699529 -105837730 + B4A SINE B4 2 292 0 2 941 225 178 0 22 chr5 46699530 46699576 -105837683 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 941 920 301 0 99 chr5 46700666 46701031 -105836228 - MTEa LTR MaLR 0 379 51 2 941 423 0 0 0 chr5 46701055 46701102 -105836157 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 941 2687 79 38 3 chr5 46701102 46701470 -105835789 + MTB LTR MaLR 20 400 0 2 941 6657 121 3 81 chr5 46701470 46702661 -105834598 + MTB-int LTR MaLR 1 1098 0 2 941 2934 65 41 8 chr5 46702661 46703048 -105834211 + MTB LTR MaLR 1 400 0 2 941 21 36 0 0 chr5 46703048 46703076 -105834183 + AT_rich Low_complexity Low_complexity 1 28 0 2 941 269 152 72 0 chr5 46703096 46703234 -105834025 + (TA)n Simple_repeat Simple_repeat 1 148 0 2 941 486 94 57 29 chr5 46703249 46703424 -105833835 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 941 1638 174 118 9 chr5 46703813 46704143 -105833116 + ORR1B2 LTR MaLR 1 356 -14 2 941 8534 67 24 4 chr5 46704143 46705010 -105832249 - Lx3_Mus LINE L1 -214 6795 5925 2 941 261 0 0 0 chr5 46705010 46705039 -105832220 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 2 941 8534 72 15 2 chr5 46705039 46706167 -105831092 - Lx3_Mus LINE L1 -1085 5924 4771 2 941 623 135 90 0 chr5 46706167 46706300 -105830959 + Lx3_Mus LINE L1 6858 7002 -7 2 941 398 109 0 0 chr5 46706321 46706376 -105830883 + ORR1B2 LTR MaLR 340 394 0 2 941 390 226 21 0 chr5 46708155 46708248 -105829011 - Lx9 LINE L1 -321 7323 7229 2 941 17237 119 19 14 chr5 46709006 46712539 -105824720 + L1_Mus1 LINE L1 358 3911 -1972 2 941 1440 154 63 0 chr5 46712542 46712827 -105824432 + L1Md_A LINE L1 183 485 -6239 2 941 24495 40 2 1 chr5 46712843 46716013 -105821246 + L1Md_F2 LINE L1 2413 5586 -297 2 941 7749 51 4 25 chr5 46716013 46717031 -105820228 + L1Md_F2 LINE L1 5587 6582 0 2 941 11849 101 28 3 chr5 46717042 46719638 -105817621 + L1_Mus1 LINE L1 3899 6567 0 2 941 564 15 0 0 chr5 46720285 46720350 -105816909 + (GA)n Simple_repeat Simple_repeat 1 65 0 2 941 219 300 75 104 chr5 46720557 46720691 -105816568 + MIR SINE MIR 25 154 -108 2 941 994 294 39 48 chr5 46720922 46721279 -105815980 - ORR1E LTR MaLR -5 354 1 2 941 722 184 21 7 chr5 46721486 46721628 -105815631 + MTD LTR MaLR 264 407 -12 2 941 201 39 0 0 chr5 46721837 46721863 -105815396 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2 941 577 69 23 0 chr5 46722476 46722563 -105814696 + (TC)n Simple_repeat Simple_repeat 2 90 0 2 941 637 43 21 0 chr5 46722716 46722809 -105814450 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 941 230 311 0 91 chr5 46723087 46723186 -105814073 - L2c LINE L2 -5 3382 3293 2 941 921 249 114 31 chr5 46724017 46724402 -105812857 + MTD LTR MaLR 1 417 -2 2 941 765 193 13 33 chr5 46725437 46725587 -105811672 - B1_Mur4 SINE Alu -2 148 2 2 941 372 245 108 0 chr5 46726275 46726377 -105810882 + PB1 SINE Alu 13 125 -2 2 941 184 333 18 0 chr5 46726434 46726491 -105810768 - MIRb SINE MIR -77 191 134 2 941 270 0 0 0 chr5 46726530 46726560 -105810699 + (A)n Simple_repeat Simple_repeat 1 30 0 3 941 600 259 44 0 chr5 46726850 46726985 -105810274 - B3 SINE B2 -5 211 71 3 941 981 267 85 18 chr5 46727759 46728148 -105809111 - Lx8 LINE L1 -93 7380 6966 3 941 1276 300 106 24 chr5 46728160 46728738 -105808521 - Lx8 LINE L1 -586 6887 6263 3 941 300 207 215 0 chr5 46729033 46729171 -105808088 - Lx8 LINE L1 -1801 5895 5698 3 941 294 236 102 132 chr5 46729867 46730033 -105807226 + MamRep137 DNA TcMar? 284 444 0 3 941 447 19 0 0 chr5 46730165 46730217 -105807042 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 941 263 357 65 26 chr5 46731283 46731513 -105805746 + Lx8 LINE L1 7034 7272 -201 3 941 1408 272 22 3 chr5 46731711 46732076 -105805183 + MTE2b LTR MaLR 5 376 -3 3 941 794 209 0 0 chr5 46732718 46732857 -105804402 + B1_Mur3 SINE Alu 3 141 -8 3 941 180 111 0 0 chr5 46732858 46732885 -105804374 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 3 941 497 329 92 69 chr5 46733045 46733394 -105803865 + ORR1E LTR MaLR 3 359 0 3 941 336 310 17 8 chr5 46734122 46734239 -105803020 + MTD LTR MaLR 3 120 -299 3 941 5765 246 70 35 chr5 46734250 46734668 -105802591 - Lx6 LINE L1 -10 7450 7020 3 941 578 14 0 14 chr5 46734668 46734740 -105802519 + (ATGTG)n Simple_repeat Simple_repeat 4 74 0 3 941 5765 219 99 27 chr5 46734740 46736538 -105800721 - Lx6 LINE L1 -441 7019 5107 3 941 769 284 80 15 chr5 46736542 46736837 -105800422 + MTD LTR MaLR 87 392 -8 3 941 507 33 0 0 chr5 46737122 46737183 -105800076 + (TATG)n Simple_repeat Simple_repeat 2 62 0 3 941 1202 81 6 0 chr5 46737185 46737357 -105799902 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 3 941 422 280 103 40 chr5 46738066 46738241 -105799018 + MIRb SINE MIR 23 208 -60 3 941 489 99 0 0 chr5 46740249 46740330 -105796929 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 941 288 270 29 21 chr5 46740549 46740689 -105796570 + (TA)n Simple_repeat Simple_repeat 1 141 0 3 941 21 36 0 0 chr5 46740736 46740764 -105796495 + AT_rich Low_complexity Low_complexity 1 28 0 3 941 209 98 48 24 chr5 46741201 46741243 -105796016 + (CAGAGA)n Simple_repeat Simple_repeat 2 44 0 3 941 448 190 3 18 chr5 46741244 46741538 -105795721 + GA-rich Low_complexity Low_complexity 1 289 0 3 941 267 54 0 0 chr5 46741539 46741576 -105795683 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 941 300 332 62 8 chr5 46741597 46741840 -105795419 - L1MC1 LINE L1 -48 6285 6030 3 941 308 331 77 0 chr5 46741877 46742007 -105795252 + MIR SINE MIR 119 258 -4 3 941 243 157 45 57 chr5 46742458 46742546 -105794713 + (TTATA)n Simple_repeat Simple_repeat 3 89 0 3 941 558 0 0 0 chr5 46743423 46743485 -105793774 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 941 201 304 101 0 chr5 46743964 46744033 -105793226 - MER5B DNA MER1_type -89 89 14 3 941 254 274 160 0 chr5 46744044 46744150 -105793109 - MER67A LTR ERV1 -44 499 377 3 941 486 309 67 16 chr5 46744251 46744445 -105792814 - MER67A LTR ERV1 -336 207 4 3 941 387 0 0 0 chr5 46745557 46745600 -105791659 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 941 378 0 0 0 chr5 46745600 46745641 -105791618 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 941 187 310 33 58 chr5 46745684 46745804 -105791455 - L3 LINE CR1 -1544 2945 2829 3 941 21 57 0 0 chr5 46745889 46745924 -105791335 + AT_rich Low_complexity Low_complexity 1 35 0 3 941 254 303 13 13 chr5 46746265 46746342 -105790917 + GA-rich Low_complexity Low_complexity 5 81 0 3 941 240 284 0 39 chr5 46746519 46746596 -105790663 + A-rich Low_complexity Low_complexity 4 77 0 3 941 468 0 0 0 chr5 46747707 46747759 -105789500 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 941 447 19 0 0 chr5 46747762 46747814 -105789445 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 941 2682 116 0 2 chr5 46747866 46748265 -105788994 - L1_Mus4 LINE L1 -3 6633 6236 3 941 493 208 105 23 chr5 46748763 46748896 -105788363 + Lx8 LINE L1 7234 7377 -96 3 941 315 0 0 0 chr5 46748966 46749001 -105788258 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3 941 459 0 0 0 chr5 46749014 46749065 -105788194 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 941 26 74 0 0 chr5 46749508 46749562 -105787697 + AT_rich Low_complexity Low_complexity 1 54 0 3 941 1544 275 24 38 chr5 46749623 46750125 -105787134 + Lx5 LINE L1 6555 7049 -1 3 941 1851 195 45 16 chr5 46751031 46751407 -105785852 - MTD LTR MaLR -32 387 1 3 941 792 32 0 0 chr5 46751732 46751827 -105785432 + (TCC)n Simple_repeat Simple_repeat 3 97 0 3 941 249 128 0 0 chr5 46752829 46752876 -105784383 + (TCTG)n Simple_repeat Simple_repeat 1 47 0 3 941 21 0 0 0 chr5 46753311 46753332 -105783927 + AT_rich Low_complexity Low_complexity 1 21 0 3 941 249 277 142 8 chr5 46753730 46753850 -105783409 - L3 LINE CR1 -2181 2308 2173 3 941 1045 99 7 13 chr5 46754289 46754442 -105782817 + B2_Mm2 SINE B2 2 153 -42 3 941 268 326 0 0 chr5 46754689 46754778 -105782481 + MLT1A LTR MaLR 30 118 -256 3 941 425 358 172 11 chr5 46755960 46756437 -105780822 + L1M5 LINE L1 2464 3017 -3129 3 941 1102 160 51 6 chr5 46756795 46757201 -105780058 + L1_Mur2 LINE L1 888 1377 -4500 3 941 301 225 13 66 chr5 46757524 46757600 -105779659 - ID_B1 SINE B4 -1 223 152 3 941 258 32 0 0 chr5 46757653 46757684 -105779575 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 941 1102 88 0 0 chr5 46757684 46757821 -105779438 - B1_Mus1 SINE Alu -11 137 1 3 941 221 277 42 21 chr5 46759723 46759819 -105777440 - MIR SINE MIR -44 218 121 3 941 6503 98 6 14 chr5 46762309 46763308 -105773951 - Lx LINE L1 0 6654 5664 3 941 7607 77 6 0 chr5 46763309 46764376 -105772883 + Lx LINE L1 4607 5679 -204 3 941 387 0 0 0 chr5 46764376 46764419 -105772840 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 941 1499 37 0 0 chr5 46764423 46764610 -105772649 - L1Md_F2 LINE L1 -14 6568 6382 3 941 3942 5 0 0 chr5 46764624 46765061 -105772198 - L1Md_T LINE L1 0 6582 6146 3 941 32956 65 2 6 chr5 46765061 46768562 -105768697 - L1Md_F2 LINE L1 -195 6387 2882 3 941 5315 63 6 0 chr5 46768562 46769245 -105768014 - L1Md_F3 LINE L1 0 6584 5898 3 941 32956 80 3 6 chr5 46769245 46771805 -105765454 - L1Md_F2 LINE L1 -3002 2881 350 3 941 487 159 0 11 chr5 46771805 46771894 -105765365 + B2_Mm2 SINE B2 107 194 -1 3 941 2806 102 28 83 chr5 46772057 46772562 -105764697 - RLTR44C LTR ERVK -25 477 1 3 941 1011 119 168 20 chr5 46773287 46773484 -105763775 + URR1A DNA MER1_type 1 226 0 3 941 33 0 0 0 chr5 46774000 46774033 -105763226 + AT_rich Low_complexity Low_complexity 1 33 0 3 941 2315 83 9 3 chr5 46775333 46775649 -105761610 - L1_Mus1 LINE L1 -3 6564 6247 3 941 477 34 0 0 chr5 46775871 46775930 -105761329 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 941 562 286 5 39 chr5 46776689 46776893 -105760366 - B3A SINE B2 -1 197 1 3 941 393 275 23 148 chr5 46777537 46777622 -105759637 - B3A SINE B2 -85 113 39 3 941 1270 75 42 31 chr5 46777622 46777814 -105759445 - B2_Mm2 SINE B2 0 195 2 3 941 390 275 23 148 chr5 46777814 46777856 -105759403 - B3A SINE B2 -160 38 2 3 941 2187 329 60 37 chr5 46778938 46779629 -105757630 - Lx8 LINE L1 -62 7411 6684 3 941 318 50 0 0 chr5 46779629 46779669 -105757590 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 941 2187 329 60 37 chr5 46779669 46780100 -105757159 - Lx8 LINE L1 -790 6683 6264 3 941 441 293 51 6 chr5 46780246 46780404 -105756855 - LTR83 LTR ERVL -607 173 9 3 941 489 17 0 0 chr5 46780699 46780757 -105756502 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 941 468 0 0 0 chr5 46781827 46781879 -105755380 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 3 941 257 281 44 66 chr5 46782140 46782277 -105754982 + L2 LINE L2 2322 2455 -964 3 941 235 296 71 44 chr5 46782525 46782638 -105754621 + RLTR22_Mus LTR ERVK 1206 1321 -487 3 941 542 350 22 45 chr5 46782706 46782930 -105754329 - LTR33 LTR ERVL 0 515 297 3 941 568 353 84 27 chr5 46784667 46784929 -105752330 + MLT1A1 LTR MaLR 3 279 -129 3 941 229 376 73 0 chr5 46785043 46785152 -105752107 - MIRb SINE MIR -127 141 25 3 941 22 35 0 0 chr5 46785265 46785294 -105751965 + AT_rich Low_complexity Low_complexity 1 29 0 3 941 31 0 0 0 chr5 46785363 46785394 -105751865 + AT_rich Low_complexity Low_complexity 1 31 0 3 941 214 87 0 42 chr5 46785409 46785457 -105751802 + (TTAA)n Simple_repeat Simple_repeat 1 46 0 3 941 450 151 95 0 chr5 46785474 46785600 -105751659 - Lx3_Mus LINE L1 -8 7001 6864 3 941 219 36 0 0 chr5 46785600 46785628 -105751631 + (T)n Simple_repeat Simple_repeat 1 28 0 3 941 37858 30 1 0 chr5 46785630 46792488 -105744771 - L1Md_T LINE L1 0 6585 1 3 117 5864 81 19 2 chr5 46792512 46793340 -105743919 + Lx3_Mus LINE L1 4773 5614 -272 3 942 8513 90 18 13 chr5 46793354 46794594 -105742665 + Lx3_Mus LINE L1 5762 7007 -2 3 942 36 53 0 0 chr5 46794595 46794652 -105742607 + AT_rich Low_complexity Low_complexity 1 57 0 3 942 360 0 0 0 chr5 46794666 46794706 -105742553 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 3 942 399 41 0 0 chr5 46795173 46795222 -105742037 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 942 418 266 45 38 chr5 46795497 46795630 -105741629 + B3 SINE B2 1 134 -82 3 942 983 271 62 20 chr5 46795668 46796162 -105741097 + L1M4c LINE L1 2716 3651 -3683 3 942 354 220 11 0 chr5 46796169 46796260 -105740999 - Lx9 LINE L1 -1 7643 7552 3 942 903 133 0 0 chr5 46796271 46796436 -105740823 + (CA)n Simple_repeat Simple_repeat 1 165 0 3 942 484 328 37 21 chr5 46797524 46797714 -105739545 - MIRb SINE MIR -37 231 39 3 942 371 322 141 0 chr5 46797798 46797947 -105739312 + MLT1B LTR MaLR 272 502 -3 3 942 279 268 62 0 chr5 46798593 46798705 -105738554 + MER33 DNA MER1_type 184 302 -22 3 942 396 0 0 0 chr5 46799559 46799603 -105737656 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 942 504 309 19 89 chr5 46800231 46800444 -105736815 + B3A SINE B2 1 198 0 3 942 407 303 58 71 chr5 46800697 46800992 -105736267 + L1_Mur2 LINE L1 5139 5429 -448 3 942 392 265 16 26 chr5 46801251 46801371 -105735888 + MIR SINE MIR 1 119 -149 3 942 1434 129 28 4 chr5 46801429 46801677 -105735582 + L1_Mus3 LINE L1 6379 6632 -6 4 942 3084 112 38 30 chr5 46801721 46802225 -105735034 + Lx LINE L1 6141 6648 -6 4 942 220 158 0 34 chr5 46805007 46805066 -105732193 + (TA)n Simple_repeat Simple_repeat 2 58 0 4 942 324 0 0 0 chr5 46807132 46807168 -105730091 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 942 233 310 84 25 chr5 46808011 46808130 -105729129 - L2c LINE L2 -70 3317 3192 4 942 452 337 41 74 chr5 46809078 46809347 -105727912 - LTR55 LTR ERV -240 308 49 4 942 648 0 0 0 chr5 46809425 46809497 -105727762 + (GA)n Simple_repeat Simple_repeat 1 72 0 4 942 295 207 0 40 chr5 46809707 46809793 -105727466 + L1_Rod LINE L1 5154 5268 -612 4 942 1114 298 88 2 chr5 46809844 46810328 -105726931 + L1MA4 LINE L1 5401 5936 -364 4 942 475 343 71 34 chr5 46810593 46810946 -105726313 + L1M5 LINE L1 4127 4492 -1654 4 942 595 242 158 18 chr5 46810997 46811270 -105725989 + L1M5 LINE L1 5504 5814 -365 4 942 694 259 25 0 chr5 46811281 46811439 -105725820 - Lx9 LINE L1 -1042 6602 6441 4 942 378 0 0 0 chr5 46811641 46811683 -105725576 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 942 227 188 21 0 chr5 46811797 46811845 -105725414 + CT-rich Low_complexity Low_complexity 3 51 0 4 942 655 263 41 0 chr5 46811845 46811931 -105725328 - MT2A LTR ERVL -355 178 89 4 942 486 0 0 0 chr5 46811931 46811985 -105725274 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 4 942 655 263 41 0 chr5 46811985 46812069 -105725190 - MT2A LTR ERVL -445 88 3 4 942 727 260 58 37 chr5 46812216 46812404 -105724855 - B3A SINE B2 0 198 7 4 942 411 343 89 40 chr5 46812424 46812819 -105724440 - L1MEd LINE L1 -5102 1017 604 4 942 334 246 0 0 chr5 46812841 46812910 -105724349 + RMER15 LTR ERVL 1 69 -506 4 942 293 339 102 8 chr5 46812990 46813118 -105724141 + B1F SINE Alu 1 140 -9 4 942 261 0 0 0 chr5 46813235 46813264 -105723995 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 4 942 261 0 0 0 chr5 46813375 46813404 -105723855 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 942 367 101 12 12 chr5 46813520 46813600 -105723659 + (TTTTTG)n Simple_repeat Simple_repeat 5 84 0 4 942 194 62 31 0 chr5 46815267 46815299 -105721960 + (TTA)n Simple_repeat Simple_repeat 2 34 0 4 942 943 126 125 6 chr5 46815301 46815461 -105721798 - B2_Mm2 SINE B2 -14 181 3 4 942 896 338 32 12 chr5 46815838 46816245 -105721014 + Lx9 LINE L1 6306 6720 -924 4 942 2933 162 2 0 chr5 46816232 46816738 -105720521 + L1_Mm LINE L1 4494 5000 -883 4 942 641 248 35 98 chr5 46816727 46817013 -105720246 + Lx9 LINE L1 6716 6983 -661 4 942 201 133 0 0 chr5 46817015 46817045 -105720214 + (CATG)n Simple_repeat Simple_repeat 2 31 0 4 942 22 0 0 0 chr5 46817170 46817192 -105720067 + AT_rich Low_complexity Low_complexity 1 22 0 4 942 693 307 136 15 chr5 46817334 46817665 -105719594 - MLT1A1 LTR MaLR -35 373 3 4 942 1197 326 41 39 chr5 46820381 46820872 -105716387 + MLT1D LTR MaLR 5 496 -9 4 942 2599 69 27 11 chr5 46820967 46821332 -105715927 - L1Md_F2 LINE L1 -1 6581 6211 4 942 23 33 0 0 chr5 46821865 46821895 -105715364 + AT_rich Low_complexity Low_complexity 1 30 0 4 942 284 0 28 0 chr5 46823945 46823981 -105713278 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 4 942 426 363 63 5 chr5 46824956 46825147 -105712112 + MIRb SINE MIR 11 212 -56 4 942 205 311 69 69 chr5 46825621 46825752 -105711507 + MIRb SINE MIR 102 232 -36 4 942 1312 264 95 18 chr5 46825983 46826372 -105710887 - MTD LTR MaLR 0 419 1 4 942 255 189 0 0 chr5 46826374 46826427 -105710832 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 942 663 105 23 0 chr5 46826615 46826748 -105710511 + (GA)n Simple_repeat Simple_repeat 1 136 0 4 942 648 0 0 0 chr5 46827007 46827079 -105710180 + (CCCTAA)n Simple_repeat Simple_repeat 2 73 0 4 942 372 328 57 25 chr5 46827593 46827715 -105709544 + ID_B1 SINE B4 86 211 -13 4 942 459 0 0 0 chr5 46829066 46829117 -105708142 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 4 942 21 104 0 0 chr5 46829246 46829323 -105707936 + AT_rich Low_complexity Low_complexity 1 77 0 4 942 350 337 15 56 chr5 46829423 46829618 -105707641 - B3A SINE B2 -10 188 2 4 942 449 363 0 15 chr5 46829731 46829868 -105707391 - RSINE1 SINE B4 0 165 31 4 942 459 0 0 0 chr5 46829877 46829928 -105707331 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 942 4969 134 31 5 chr5 46829957 46830753 -105706506 - Lx4A LINE L1 -7 7051 6235 4 942 425 309 51 0 chr5 46830954 46831129 -105706130 - L1MD2 LINE L1 -366 5993 5810 4 942 646 169 146 12 chr5 46831129 46831327 -105705932 + RLTR41 LTR ERV1 1 266 -180 4 942 450 229 18 9 chr5 46831328 46831438 -105705821 - L1Md_F LINE L1 -5831 688 578 4 942 1233 111 11 11 chr5 46831488 46831670 -105705589 + RLTR41 LTR ERV1 265 446 0 4 942 771 69 0 0 chr5 46831804 46831906 -105705353 + (TC)n Simple_repeat Simple_repeat 1 102 0 4 942 742 73 18 0 chr5 46832544 46832654 -105704605 + (GA)n Simple_repeat Simple_repeat 2 113 0 4 942 387 256 11 23 chr5 46832654 46832742 -105704517 - B3A SINE B2 -111 87 1 4 942 986 259 0 5 chr5 46832757 46832974 -105704285 - B3 SINE B2 0 216 1 4 942 856 302 37 27 chr5 46833016 46833315 -105703944 - MLT2D LTR ERVL -109 305 4 4 942 217 241 0 37 chr5 46833704 46833786 -105703473 + (CATA)n Simple_repeat Simple_repeat 2 80 0 4 942 322 224 0 0 chr5 46833796 46833854 -105703405 - RSINE1 SINE B4 -96 69 12 4 942 24 0 0 0 chr5 46833887 46833911 -105703348 + AT_rich Low_complexity Low_complexity 1 24 0 4 942 251 182 10 48 chr5 46834130 46834234 -105703025 + GA-rich Low_complexity Low_complexity 3 102 0 4 942 360 0 0 0 chr5 46834438 46834478 -105702781 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 942 234 211 69 17 chr5 46834478 46834536 -105702723 - RSINE1 SINE B4 -41 124 64 4 942 242 138 17 0 chr5 46835944 46836002 -105701257 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 4 942 21 0 0 0 chr5 46836288 46836309 -105700950 + AT_rich Low_complexity Low_complexity 1 21 0 4 942 21 0 0 0 chr5 46837698 46837719 -105699540 + AT_rich Low_complexity Low_complexity 1 21 0 4 942 267 295 133 9 chr5 46838159 46838272 -105698987 + B1F1 SINE Alu 22 148 -1 4 942 255 304 52 26 chr5 46839035 46839150 -105698109 - Lx8 LINE L1 -539 6934 6817 4 942 227 114 23 0 chr5 46839593 46839637 -105697622 + (TC)n Simple_repeat Simple_repeat 1 45 0 4 942 533 62 38 0 chr5 46841354 46841434 -105695825 + (GGAGAA)n Simple_repeat Simple_repeat 2 84 0 4 942 24 32 0 0 chr5 46842027 46842058 -105695201 + AT_rich Low_complexity Low_complexity 1 31 0 4 942 211 235 20 0 chr5 46842587 46842638 -105694621 + GA-rich Low_complexity Low_complexity 2 53 0 4 942 523 316 13 0 chr5 46843076 46843310 -105693949 - L1MA6 LINE L1 -116 6184 5948 4 942 263 398 0 0 chr5 46843578 46843661 -105693598 + B4A SINE B4 4 86 -206 4 942 303 383 70 22 chr5 46843995 46844535 -105692724 - L1M4 LINE L1 -1024 5122 4557 4 942 617 272 155 6 chr5 46844650 46844831 -105692428 + B3 SINE B2 9 216 0 4 942 7507 132 41 25 chr5 46844960 46846314 -105690945 + Lx3A LINE L1 5607 6981 0 4 942 258 95 0 0 chr5 46846509 46846551 -105690708 + B1_Mur4 SINE Alu 109 150 0 4 942 421 309 111 33 chr5 46846599 46846870 -105690389 - MLT1F LTR MaLR 0 548 257 4 942 386 294 140 93 chr5 46846945 46847245 -105690014 + MLT1B LTR MaLR 9 322 -145 4 942 268 217 33 0 chr5 46847998 46848058 -105689201 - Lx8 LINE L1 -802 6671 6610 4 942 294 239 166 25 chr5 46848071 46848234 -105689025 + Lx8 LINE L1 7254 7439 -34 4 942 480 77 0 0 chr5 46848234 46848299 -105688960 + (TATG)n Simple_repeat Simple_repeat 4 68 0 4 942 262 294 106 27 chr5 46848929 46849065 -105688194 + MLT1A0 LTR MaLR 23 170 -238 4 942 992 100 0 0 chr5 46849098 46849228 -105688031 + B1_Mus1 SINE Alu 5 134 -14 4 942 436 290 22 30 chr5 46849257 46849392 -105687867 + ORR1E LTR MaLR 58 191 -168 4 942 188 149 21 0 chr5 46849396 46849443 -105687816 + CT-rich Low_complexity Low_complexity 3 50 0 4 942 401 145 0 13 chr5 46849455 46849532 -105687727 + CT-rich Low_complexity Low_complexity 1 76 0 4 942 36895 9 0 2 chr5 46849715 46856116 -105681143 + L1Md_A LINE L1 1 5586 -297 4 942 9053 1 1 0 chr5 46856116 46857111 -105680148 + L1Md_A LINE L1 5587 6582 0 4 942 1080 192 42 8 chr5 46857387 46857623 -105679636 + Lx3C LINE L1 6731 6974 -2 4 942 219 114 0 0 chr5 46857968 46858003 -105679256 + (T)n Simple_repeat Simple_repeat 1 35 0 4 942 293 300 90 0 chr5 46858879 46858979 -105678280 - B4 SINE B4 -99 193 85 4 942 1307 94 0 35 chr5 46859179 46859378 -105677881 - B2_Mm2 SINE B2 -3 192 1 4 942 24105 134 36 34 chr5 46861079 46864355 -105672904 - Lx4A LINE L1 0 7058 3834 4 942 2431 56 6 12 chr5 46864355 46864682 -105672577 - L1Md_F2 LINE L1 0 6582 6258 4 942 24105 142 34 44 chr5 46864682 46867864 -105669395 - Lx4A LINE L1 -2044 3833 547 4 942 3928 50 8 25 chr5 46868951 46869463 -105667796 - RLTR1C LTR ERV1 0 503 1 4 942 724 240 7 0 chr5 46870857 46871003 -105666256 + B1_Mur4 SINE Alu 2 148 -2 4 942 264 30 0 0 chr5 46871022 46871055 -105666204 + (CCAA)n Simple_repeat Simple_repeat 3 35 0 4 942 1085 166 0 26 chr5 46871277 46871469 -105665790 + B2_Mm2 SINE B2 1 187 -8 4 942 21 0 0 0 chr5 46871599 46871620 -105665639 + AT_rich Low_complexity Low_complexity 1 21 0 4 942 199 308 107 41 chr5 46871757 46871879 -105665380 + MIRc SINE MIR 50 179 -89 4 942 242 376 60 0 chr5 46872786 46872919 -105664340 + MIRb SINE MIR 32 176 -92 4 942 258 95 0 0 chr5 46873091 46873133 -105664126 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 942 846 296 87 102 chr5 46873288 46874013 -105663246 + RMER13A LTR ERVK 21 734 -126 5 942 21 0 0 0 chr5 46874324 46874345 -105662914 + AT_rich Low_complexity Low_complexity 1 21 0 5 942 471 35 0 0 chr5 46874436 46874493 -105662766 + (TATG)n Simple_repeat Simple_repeat 4 60 0 5 942 6925 120 19 8 chr5 46874817 46875889 -105661370 - Lx2 LINE L1 0 6997 5914 5 942 208 339 0 0 chr5 46876895 46876957 -105660302 + L2b LINE L2 3311 3372 -3 5 942 194 180 100 0 chr5 46877186 46877236 -105660023 + MIR SINE MIR 75 129 -133 5 942 302 324 143 0 chr5 46877414 46877519 -105659740 + PB1D7 SINE Alu 1 120 0 5 942 692 262 48 0 chr5 46877804 46877972 -105659287 + B3A SINE B2 1 176 -22 5 942 222 37 0 0 chr5 46877972 46877999 -105659260 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 942 295 250 10 61 chr5 46880056 46880154 -105657105 + ORR1E LTR MaLR 267 359 0 5 942 794 92 0 0 chr5 46880936 46881055 -105656204 - L1_Mus2 LINE L1 0 6566 6448 5 942 354 310 10 0 chr5 46881647 46881747 -105655512 - B1_Mur2 SINE Alu -48 101 1 5 942 2816 76 27 17 chr5 46881961 46882374 -105654885 + BGLII LTR ERVK 5 421 0 5 942 489 328 51 16 chr5 46883474 46883782 -105653477 + MLT1C LTR MaLR 37 463 -4 5 942 368 40 20 0 chr5 46884597 46884647 -105652612 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 942 459 242 171 16 chr5 46884897 46885090 -105652169 - MLT-int LTR MaLR -19 1716 1494 5 942 492 385 217 53 chr5 46885315 46885863 -105651396 - MLT-int LTR MaLR -270 1465 829 5 942 489 195 119 0 chr5 46885935 46886053 -105651206 + Lx9 LINE L1 7371 7502 -142 5 942 1720 42 0 9 chr5 46886068 46886287 -105650972 - L1Md_F3 LINE L1 -3 6581 6365 5 942 3973 49 0 0 chr5 46886287 46886868 -105650391 + L1Md_F3 LINE L1 5372 5952 -632 5 942 330 252 17 9 chr5 46886864 46886980 -105650279 + Lx9 LINE L1 7520 7636 -8 5 942 804 359 60 69 chr5 46886989 46887686 -105649573 - MLT-int LTR MaLR -964 771 81 5 942 917 320 24 5 chr5 46887749 46888129 -105649130 - ERVL-B4-int LTR ERVL -4596 1118 732 5 942 252 226 0 0 chr5 46888590 46888652 -105648607 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 942 599 276 37 32 chr5 46889564 46889781 -105647478 - Lx8 LINE L1 -83 7390 7173 5 942 9755 88 12 0 chr5 46889859 46891953 -105645306 - L1_Mus1 LINE L1 0 6567 4451 5 942 522 0 0 0 chr5 46892589 46892647 -105644612 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 5 942 1158 249 78 44 chr5 46892649 46893010 -105644249 - Lx6 LINE L1 -58 7402 7030 5 942 493 282 25 2 chr5 46893013 46893152 -105644107 + Lx5 LINE L1 6484 6630 -428 5 942 249 312 69 0 chr5 46893160 46893304 -105643955 - L1MC LINE L1 -2226 5559 5406 5 942 234 0 0 0 chr5 46893341 46893367 -105643892 + (T)n Simple_repeat Simple_repeat 1 26 0 5 942 426 272 15 53 chr5 46893380 46893512 -105643747 + B1_Mm SINE Alu 1 127 -20 5 942 321 221 0 0 chr5 46893539 46893643 -105643616 + GA-rich Low_complexity Low_complexity 2 105 0 5 942 234 116 0 0 chr5 46893655 46893698 -105643561 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 5 942 486 0 0 0 chr5 46893701 46893755 -105643504 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 942 6323 37 3 0 chr5 46894514 46895272 -105641987 - L1Md_F2 LINE L1 -1 6581 5822 5 942 22 0 0 0 chr5 46896809 46896831 -105640428 + AT_rich Low_complexity Low_complexity 1 22 0 5 942 21 0 0 0 chr5 46897065 46897086 -105640173 + AT_rich Low_complexity Low_complexity 1 21 0 5 942 28 48 0 0 chr5 46897105 46897147 -105640112 + AT_rich Low_complexity Low_complexity 1 42 0 5 942 193 303 105 0 chr5 46897581 46897657 -105639602 + L2c LINE L2 3217 3300 -87 5 942 560 280 81 18 chr5 46897942 46898215 -105639044 + L1M3 LINE L1 4967 5256 -884 5 942 514 295 84 33 chr5 46898236 46898684 -105638575 + L1M3 LINE L1 5307 5772 -396 5 942 3773 280 103 30 chr5 46899082 46901057 -105636202 - Charlie12 DNA MER1_type -16 2857 743 5 942 567 29 0 0 chr5 46901057 46901126 -105636133 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 5 942 1335 256 147 34 chr5 46901126 46901226 -105636033 - Charlie12 DNA MER1_type -2131 742 627 5 942 465 300 17 0 chr5 46901344 46901464 -105635795 + RSINE1 SINE B4 3 124 -41 5 942 440 268 85 23 chr5 46901734 46901861 -105635398 + RMER30 DNA MER1_type 20 154 -48 5 942 231 163 0 0 chr5 46901861 46901904 -105635355 - MT2A LTR ERVL 0 584 542 5 942 1294 234 166 95 chr5 46902000 46902421 -105634838 - MT2A LTR ERVL -82 451 1 5 942 26 0 0 0 chr5 46902534 46902560 -105634699 + AT_rich Low_complexity Low_complexity 1 26 0 5 942 313 325 0 99 chr5 46903666 46903847 -105633412 - RSINE1 SINE B4 0 165 3 5 942 288 289 112 17 chr5 46903872 46903988 -105633271 - MER5B DNA MER1_type -48 130 4 5 942 413 298 85 34 chr5 46904002 46904179 -105633080 + MER5A DNA MER1_type 4 189 0 5 942 962 241 165 10 chr5 46904392 46904689 -105632570 + MER47A DNA MER2_type 1 343 -23 5 942 195 42 0 0 chr5 46904885 46904909 -105632350 + (TTCCC)n Simple_repeat Simple_repeat 4 27 0 5 942 1141 86 23 0 chr5 46904909 46905083 -105632176 + (TCCCC)n Simple_repeat Simple_repeat 1 178 0 5 942 672 36 0 0 chr5 46906016 46906099 -105631160 + (TC)n Simple_repeat Simple_repeat 1 83 0 5 942 408 181 59 18 chr5 46906639 46906808 -105630451 + GA-rich Low_complexity Low_complexity 3 178 0 5 942 381 300 119 48 chr5 46907135 46907345 -105629914 - MLT1A LTR MaLR -17 357 133 5 942 259 366 78 7 chr5 46907365 46907519 -105629740 - MLT2B2 LTR ERVL -173 381 217 5 942 324 0 0 0 chr5 46907554 46907590 -105629669 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 942 378 0 0 0 chr5 46907590 46907631 -105629628 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 942 352 291 121 42 chr5 46907790 46907935 -105629324 - MLT2B2 LTR ERVL -310 205 48 5 942 3882 118 6 33 chr5 46907935 46908564 -105628695 + Lx LINE L1 6043 6654 0 5 942 352 291 121 42 chr5 46908564 46908608 -105628651 - MLT2B2 LTR ERVL -468 47 1 5 942 258 314 159 63 chr5 46908608 46908734 -105628525 - MLT1A LTR MaLR -269 139 2 5 942 21 36 0 0 chr5 46908753 46908781 -105628478 + AT_rich Low_complexity Low_complexity 1 28 0 5 942 54 77 0 0 chr5 46909002 46909119 -105628140 + AT_rich Low_complexity Low_complexity 1 117 0 5 942 1929 181 0 6 chr5 46909121 46909470 -105627789 + Lx LINE L1 6302 6648 -6 5 942 24 0 0 0 chr5 46909633 46909657 -105627602 + AT_rich Low_complexity Low_complexity 1 24 0 5 942 213 39 0 0 chr5 46910629 46910655 -105626604 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 942 255 190 0 0 chr5 46910740 46910798 -105626461 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 5 942 972 153 0 0 chr5 46910819 46910989 -105626270 + (TA)n Simple_repeat Simple_repeat 2 171 0 5 942 315 0 0 0 chr5 46910989 46911023 -105626236 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 942 256 236 9 9 chr5 46911510 46911621 -105625638 + CT-rich Low_complexity Low_complexity 2 112 0 5 942 22 0 0 0 chr5 46911666 46911688 -105625571 + AT_rich Low_complexity Low_complexity 1 22 0 5 942 327 49 0 0 chr5 46913802 46913843 -105623416 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 942 305 47 23 0 chr5 46913843 46913885 -105623374 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 942 360 0 0 0 chr5 46913885 46913924 -105623335 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 942 6834 85 21 13 chr5 46913950 46914916 -105622343 + L1_Mus3 LINE L1 5684 6634 -4 5 942 5078 2 0 0 chr5 46915905 46916467 -105620792 - L1Md_A LINE L1 0 6582 6021 5 942 1579 281 79 43 chr5 46916520 46917136 -105620123 - Lx6 LINE L1 -26 7434 6446 5 942 390 21 0 0 chr5 46917136 46917183 -105620076 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 5 942 1379 312 47 121 chr5 46917183 46917427 -105619832 - Lx6 LINE L1 -605 6445 6254 5 942 588 261 62 0 chr5 46917395 46917571 -105619688 - Lx6 LINE L1 -1293 6167 5981 5 942 624 220 42 0 chr5 46917638 46917756 -105619503 + ETnERV2-int LTR ERVK 7070 7192 -214 5 942 3368 143 66 14 chr5 46918082 46918656 -105618603 - Lx LINE L1 -191 6463 5860 5 942 453 345 5 1 chr5 46918682 46918862 -105618397 - Lx7 LINE L1 -463 7010 6815 5 942 34 24 0 0 chr5 46918961 46919002 -105618257 + AT_rich Low_complexity Low_complexity 1 41 0 5 942 1477 169 76 62 chr5 46919073 46919290 -105617969 - RLTR15 LTR ERVK 0 359 141 5 942 489 47 0 0 chr5 46919290 46919354 -105617905 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 942 1477 169 76 62 chr5 46919354 46919490 -105617769 - RLTR15 LTR ERVK -219 140 3 5 942 197 33 33 0 chr5 46919693 46919723 -105617536 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 942 576 288 20 0 chr5 46919744 46919890 -105617369 + B1_Mur1 SINE Alu 1 149 0 5 942 184 264 150 48 chr5 46920516 46920663 -105616596 + MIRb SINE MIR 107 268 0 5 942 230 349 35 11 chr5 46921230 46921306 -105615953 + MER58A DNA MER1_type 1 78 -146 5 942 527 276 140 17 chr5 46921306 46921542 -105615717 - RLTR10A LTR ERVK 0 411 147 5 942 350 38 0 0 chr5 46921913 46921966 -105615293 + L1_Mus4 LINE L1 6578 6630 -6 5 942 677 290 71 15 chr5 46922000 46922196 -105615063 - B3 SINE B2 -3 213 7 5 943 630 118 9 0 chr5 46925775 46925885 -105611374 - Lx3C LINE L1 0 6976 6866 5 943 1471 216 20 3 chr5 46926521 46926813 -105610446 + MTC LTR MaLR 1 297 -124 5 943 2447 85 3 3 chr5 46926872 46927202 -105610057 - L1_Mus2 LINE L1 -29 6537 6208 5 943 279 0 0 0 chr5 46927321 46927352 -105609907 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 943 589 148 97 44 chr5 46927363 46927476 -105609783 - Lx3C LINE L1 -660 6313 6195 5 943 3583 135 60 7 chr5 46927476 46928093 -105609166 + Lx3A LINE L1 6325 6974 -7 5 943 1566 208 201 77 chr5 46928300 46929069 -105608190 - RMER6C LTR ERVK 0 720 1 5 943 239 0 0 31 chr5 46929533 46929565 -105607694 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 5 943 579 222 0 0 chr5 46929566 46929665 -105607594 - PB1D10 SINE Alu -1 116 18 5 943 300 269 65 58 chr5 46929898 46930052 -105607207 - L1M4 LINE L1 -1749 4397 4243 5 943 22 70 0 0 chr5 46930259 46930302 -105606957 + AT_rich Low_complexity Low_complexity 1 43 0 5 943 33 66 0 0 chr5 46930763 46930824 -105606435 + AT_rich Low_complexity Low_complexity 1 61 0 5 943 682 163 67 13 chr5 46930888 46931037 -105606222 + RMER1C Other Other 1062 1218 -124 5 943 306 73 0 0 chr5 46931039 46931080 -105606179 + (TCC)n Simple_repeat Simple_repeat 2 42 0 6 943 597 198 40 0 chr5 46931084 46931210 -105606049 + RMER1C Other Other 1208 1338 -4 5 943 567 352 5 14 chr5 46932107 46932323 -105604936 + ID_B1 SINE B4 6 219 -5 6 943 348 208 0 0 chr5 46934073 46934169 -105603090 + CT-rich Low_complexity Low_complexity 1 96 0 6 943 1077 153 16 0 chr5 46934687 46934870 -105602389 - B2_Mm2 SINE B2 -9 186 1 6 943 1452 44 0 0 chr5 46935638 46935818 -105601441 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 943 823 144 13 0 chr5 46935819 46935972 -105601287 + CT-rich Low_complexity Low_complexity 2 156 0 6 943 270 175 0 0 chr5 46935969 46936049 -105601210 + (TCTCTG)n Simple_repeat Simple_repeat 4 83 0 6 943 2105 169 8 13 chr5 46937058 46937447 -105599812 - Lx LINE L1 0 6654 6268 6 943 734 106 8 0 chr5 46937475 46937598 -105599661 + (TA)n Simple_repeat Simple_repeat 2 125 0 6 943 269 244 44 0 chr5 46937599 46937689 -105599570 - L1M3 LINE L1 -1651 4489 4396 6 943 252 128 0 0 chr5 46937759 46937798 -105599461 - Lx LINE L1 -348 6306 6268 6 943 482 137 11 0 chr5 46937826 46937921 -105599338 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 943 245 256 44 0 chr5 46937922 46938012 -105599247 - L1M3 LINE L1 -1651 4489 4396 6 943 252 128 0 0 chr5 46938082 46938121 -105599138 - Lx LINE L1 -348 6306 6268 6 943 444 67 0 0 chr5 46938149 46938209 -105599050 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 943 545 298 21 0 chr5 46938216 46938357 -105598902 - B3A SINE B2 -54 144 1 6 943 843 306 184 10 chr5 46938534 46939464 -105597795 + L1M3 LINE L1 4227 5318 -822 6 943 1321 291 104 48 chr5 46939517 46940366 -105596893 + L1MA7 LINE L1 5392 6287 -4 6 943 622 306 20 49 chr5 46940374 46940577 -105596682 + B3A SINE B2 2 198 0 6 943 416 325 111 31 chr5 46940592 46941017 -105596242 + L1MC LINE L1 4380 4838 -1308 6 943 441 322 79 6 chr5 46941250 46941566 -105595693 + L1ME1 LINE L1 5546 5884 -295 6 943 492 286 118 22 chr5 46941832 46942104 -105595155 + L1M3 LINE L1 5496 5793 -507 6 943 1314 130 98 4 chr5 46942794 46943048 -105594211 + Lx LINE L1 6366 6643 -11 6 943 507 33 0 0 chr5 46943048 46943109 -105594150 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 6 943 502 289 58 14 chr5 46943293 46943500 -105593759 - B3 SINE B2 0 216 1 6 943 34 65 0 0 chr5 46943778 46943840 -105593419 + AT_rich Low_complexity Low_complexity 1 62 0 6 943 683 341 5 32 chr5 46945189 46945407 -105591852 - B3 SINE B2 -1 215 4 6 943 489 308 63 22 chr5 46945438 46945707 -105591552 - L1MB2 LINE L1 -71 6100 5821 6 943 3079 93 52 48 chr5 46945791 46946308 -105590951 - MURVY-LTR LTR ERV1 0 519 1 6 943 395 287 153 78 chr5 46946382 46946715 -105590544 - ORR1E LTR MaLR 0 359 2 6 943 25 0 0 0 chr5 46946755 46946780 -105590479 + AT_rich Low_complexity Low_complexity 1 25 0 6 943 318 225 124 8 chr5 46947638 46947759 -105589500 - Lx9 LINE L1 -8 7636 7502 6 943 1052 324 94 26 chr5 46947920 46948561 -105588698 + BLACKJACK DNA AcHobo 438 1121 -1823 6 943 369 149 0 0 chr5 46948573 46948640 -105588619 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 943 238 329 62 45 chr5 46948646 46948936 -105588323 + BLACKJACK DNA AcHobo 1152 1446 -1498 6 943 8034 122 6 9 chr5 46948964 46950169 -105587090 + Lx2 LINE L1 5688 6888 -109 6 943 1218 121 68 0 chr5 46950372 46950579 -105586680 - Lx LINE L1 0 6997 6777 6 943 2060 143 3 0 chr5 46950580 46950894 -105586365 - Lx LINE L1 -358 6296 5982 6 943 416 284 39 47 chr5 46950894 46951023 -105586236 + RSINE1 SINE B4 37 164 -1 6 943 263 136 17 0 chr5 46951024 46951083 -105586176 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 943 305 125 18 0 chr5 46951107 46951163 -105586096 + (TAA)n Simple_repeat Simple_repeat 1 57 0 6 943 363 301 52 8 chr5 46951281 46951415 -105585844 - Lx9 LINE L1 -893 6751 6612 6 943 961 323 73 45 chr5 46951665 46952347 -105584912 + BLACKJACK DNA AcHobo 1812 2512 -432 6 943 279 157 0 0 chr5 46952446 46952497 -105584762 + GA-rich Low_complexity Low_complexity 3 53 0 6 943 795 256 0 67 chr5 46952677 46952886 -105584373 - MTE2b LTR MaLR -165 214 20 6 943 252 143 0 0 chr5 46953080 46953122 -105584137 + (A)n Simple_repeat Simple_repeat 1 42 0 6 943 604 81 0 59 chr5 46953529 46953647 -105583612 - L1Md_F2 LINE L1 -1 6581 6471 6 943 2048 55 15 7 chr5 46953647 46953921 -105583338 - L1Md_F3 LINE L1 -1 6583 6308 6 943 3136 59 0 5 chr5 46953920 46954309 -105582950 - L1Md_F2 LINE L1 -121 6461 6075 6 943 2421 56 0 0 chr5 46954305 46954607 -105582652 + L1Md_F2 LINE L1 5762 6063 -519 6 943 737 322 92 16 chr5 46954790 46955106 -105582153 + Lx8 LINE L1 7133 7472 -1 6 943 336 48 0 0 chr5 46955350 46955392 -105581867 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 6 943 1029 60 24 18 chr5 46955394 46955563 -105581696 + (GGGAA)n Simple_repeat Simple_repeat 3 172 0 6 943 906 71 0 21 chr5 46955563 46955706 -105581553 + (GGAA)n Simple_repeat Simple_repeat 4 143 0 6 943 5640 80 3 0 chr5 46955807 46956558 -105580701 - L1_Mus1 LINE L1 -9 6558 5806 6 943 262 260 61 20 chr5 46957531 46957629 -105579630 - L2c LINE L2 -6 3381 3280 6 943 1833 220 135 55 chr5 46958499 46959138 -105578121 + RMER6C LTR ERVK 1 690 0 6 943 1999 127 31 0 chr5 46960362 46960684 -105576575 + Lx LINE L1 6311 6642 -12 6 943 1476 34 0 0 chr5 46961117 46961295 -105575964 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 6 943 592 119 9 9 chr5 46961295 46961405 -105575854 + (TCCCC)n Simple_repeat Simple_repeat 1 110 0 6 943 233 315 0 14 chr5 46962695 46962769 -105574490 - MER5A1 DNA MER1_type -90 76 4 6 943 1097 56 0 34 chr5 46962901 46963049 -105574210 - B1_Mm SINE Alu 0 147 5 6 943 298 331 56 105 chr5 46963303 46963344 -105573915 + MER20 DNA MER1_type 3 34 -185 6 943 974 196 13 64 chr5 46963344 46963579 -105573680 - URR1B DNA MER1_type -2 223 1 6 943 298 331 56 105 chr5 46963579 46963699 -105573560 + MER20 DNA MER1_type 35 156 -63 6 943 227 234 13 0 chr5 46964001 46964078 -105573181 + (TA)n Simple_repeat Simple_repeat 1 78 0 6 943 21 0 0 0 chr5 46965040 46965061 -105572198 + AT_rich Low_complexity Low_complexity 1 21 0 6 943 235 363 175 7 chr5 46965099 46965396 -105571863 + L2 LINE L2 930 1276 -2143 6 943 334 302 97 17 chr5 46965596 46965729 -105571530 - MER58A DNA MER1_type -2135 285 26 6 943 198 385 94 67 chr5 46965751 46966333 -105570926 + L2 LINE L2 1384 1981 -1438 6 943 257 384 66 0 chr5 46966350 46966501 -105570758 - MER58A DNA MER1_type -6 218 58 6 943 417 332 23 23 chr5 46966671 46966887 -105570372 + RLTR4_MM-int LTR ERV1 4015 4230 -3371 6 943 883 346 73 26 chr5 46967448 46968183 -105569076 + MuRRS4-int LTR ERV1 3164 4030 -1033 6 943 353 293 20 29 chr5 46968104 46968206 -105569053 + RLTR19-int LTR ERVK 4394 4494 -1643 6 943 374 0 22 0 chr5 46969723 46969769 -105567490 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 6 943 663 25 0 0 chr5 46970556 46970637 -105566622 + (TC)n Simple_repeat Simple_repeat 2 82 0 6 943 288 0 0 0 chr5 46970637 46970668 -105566591 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 943 538 276 39 0 chr5 46970687 46970814 -105566445 - RSINE1 SINE B4 -17 148 17 6 943 332 324 61 46 chr5 46971196 46971393 -105565866 - MIR SINE MIR -57 205 6 6 943 405 54 0 0 chr5 46972014 46972070 -105565189 + (CCAA)n Simple_repeat Simple_repeat 2 57 0 6 943 222 205 0 0 chr5 46972177 46972216 -105565043 + (TTG)n Simple_repeat Simple_repeat 2 40 0 6 943 11948 55 5 1 chr5 46972556 46974753 -105562506 - L1Md_F2 LINE L1 -12 6570 4365 6 943 347 15 75 30 chr5 46975309 46975376 -105561883 + (CAAAA)n Simple_repeat Simple_repeat 2 71 0 6 943 180 0 0 0 chr5 46975645 46975665 -105561594 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 943 279 0 0 0 chr5 46975720 46975751 -105561508 + (T)n Simple_repeat Simple_repeat 1 31 0 6 943 319 382 33 0 chr5 46976185 46976337 -105560922 - MER5A DNA MER1_type 0 189 33 6 943 220 191 0 0 chr5 46977762 46977804 -105559455 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 943 22 88 0 0 chr5 46979708 46979765 -105557494 + AT_rich Low_complexity Low_complexity 1 57 0 6 943 2556 178 47 16 chr5 46982000 46982513 -105554746 - RLTR24 LTR ERV1 0 529 1 6 943 1005 310 61 34 chr5 46984691 46985102 -105552157 - MLT2C2 LTR ERVL -40 424 3 6 943 1677 262 66 36 chr5 46986040 46986102 -105551157 - RMER1C Other Other -2 1340 1291 6 943 3056 138 8 2 chr5 46986102 46986574 -105550685 - MT2C_Mm LTR ERVL 0 475 1 6 943 1677 262 66 36 chr5 46986574 46987038 -105550221 - RMER1C Other Other -52 1290 798 6 943 191 336 71 39 chr5 46987859 46987986 -105549273 + L2c LINE L2 3246 3376 -11 6 943 258 342 18 0 chr5 46988298 46988409 -105548850 - L5 LINE RTE -385 1880 1768 6 943 230 301 219 13 chr5 46988803 46988988 -105548271 - MIR SINE MIR -21 241 26 6 943 199 122 41 0 chr5 46989222 46989271 -105547988 + (TA)n Simple_repeat Simple_repeat 2 52 0 6 943 615 27 0 0 chr5 46990632 46990705 -105546554 + (TG)n Simple_repeat Simple_repeat 2 74 0 6 943 849 282 62 18 chr5 46991272 46991499 -105545760 + B4 SINE B4 3 239 -53 6 943 218 245 0 0 chr5 46992061 46992110 -105545149 + G-rich Low_complexity Low_complexity 2 50 0 6 943 3181 129 2 0 chr5 46992154 46992626 -105544633 - Lx2 LINE L1 -3 6994 6522 6 943 1032 156 0 0 chr5 46993073 46993253 -105544006 + CT-rich Low_complexity Low_complexity 1 180 0 6 943 982 140 0 17 chr5 46993265 46993345 -105543914 + polypyrimidine Low_complexity Low_complexity 101 178 0 6 943 1258 67 0 22 chr5 46993345 46993529 -105543730 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 943 982 140 0 17 chr5 46993529 46993629 -105543630 + polypyrimidine Low_complexity Low_complexity 1 100 0 6 943 234 145 15 46 chr5 46993629 46993694 -105543565 + CT-rich Low_complexity Low_complexity 4 66 0 6 943 352 266 40 34 chr5 46993969 46994117 -105543142 - L1MA8 LINE L1 -216 6075 5927 6 943 450 366 6 35 chr5 46994132 46994155 -105543104 - RSINE1 SINE B4 0 165 144 6 943 324 0 0 0 chr5 46994155 46994191 -105543068 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 943 450 366 6 35 chr5 46994191 46994337 -105542922 - RSINE1 SINE B4 -22 143 1 6 943 665 112 17 0 chr5 46994706 46994822 -105542437 + L1_Mus3 LINE L1 6517 6634 -4 6 943 426 367 0 0 chr5 46994976 46995104 -105542155 + B3A SINE B2 27 154 -44 7 943 278 127 116 0 chr5 46995856 46996038 -105541221 + (CATAT)n Simple_repeat Simple_repeat 1 203 0 7 943 412 183 57 45 chr5 46996092 46996269 -105540990 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 7 943 3738 104 11 2 chr5 46996785 46997323 -105539936 + L1_Mus4 LINE L1 6092 6634 -2 7 943 492 59 0 0 chr5 46997413 46997481 -105539778 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 943 347 295 0 11 chr5 46999121 46999210 -105538049 + PB1D10 SINE Alu 1 88 -29 7 943 299 324 9 9 chr5 46999210 46999232 -105538027 + ID_B1 SINE B4 82 192 -32 7 943 21 0 0 0 chr5 46999886 46999907 -105537352 + AT_rich Low_complexity Low_complexity 1 21 0 7 943 454 277 79 31 chr5 47000000 47000227 -105537032 + L1M4 LINE L1 4477 4714 -1432 1 943 313 189 0 45 chr5 47000446 47000453 -105536806 + (CAAA)n Simple_repeat Simple_repeat 2 8 0 2 943 896 103 73 0 chr5 47000453 47000589 -105536670 + B1_Mm SINE Alu 1 146 -1 3 943 313 189 0 45 chr5 47000589 47000692 -105536567 + (CAAA)n Simple_repeat Simple_repeat 1 99 0 4 943 425 287 27 27 chr5 47001859 47002006 -105535253 + MLT1A0 LTR MaLR 4 150 -215 5 943 1311 91 0 25 chr5 47002013 47002216 -105535043 + L1Md_F2 LINE L1 6385 6582 0 6 943 321 307 21 35 chr5 47002252 47002394 -105534865 + MLT1A0 LTR MaLR 230 369 -5 5 943 722 131 146 0 chr5 47003157 47003287 -105533972 - Lx7 LINE L1 -744 6952 6804 7 943 646 233 13 0 chr5 47003284 47003434 -105533825 + Lx7 LINE L1 6935 7086 -610 8 943 883 229 89 96 chr5 47003436 47003852 -105533407 + Lx7 LINE L1 7274 7686 -10 8 943 1668 143 48 51 chr5 47003863 47003963 -105533296 - Lx4A LINE L1 -364 6694 6608 9 943 4304 68 2 9 chr5 47003963 47004537 -105532722 + L1Md_F2 LINE L1 6001 6570 -12 1 943 1668 143 48 51 chr5 47004537 47004752 -105532507 - Lx4A LINE L1 -451 6607 6380 9 943 1757 166 24 100 chr5 47004752 47005133 -105532126 + Lx4A LINE L1 6705 7056 -2 9 943 25 65 0 0 chr5 47005293 47005339 -105531920 + AT_rich Low_complexity Low_complexity 1 46 0 1 943 1324 165 4 22 chr5 47006531 47006760 -105530499 + URR1B DNA MER1_type 1 225 0 1 943 981 122 171 76 chr5 47007550 47007823 -105529436 - ORR1A3 LTR MaLR -9 337 1 1 943 895 235 93 0 chr5 47008239 47008443 -105528816 - MTD LTR MaLR 0 419 197 1 943 657 96 0 0 chr5 47008446 47008540 -105528719 + (TTCC)n Simple_repeat Simple_repeat 4 97 0 1 943 435 19 0 0 chr5 47008533 47008585 -105528674 + (TCTG)n Simple_repeat Simple_repeat 1 52 0 1 943 1135 78 12 6 chr5 47008585 47008753 -105528506 + (TTCC)n Simple_repeat Simple_repeat 3 171 0 1 943 1120 103 0 0 chr5 47008753 47008899 -105528360 - B1_Mus2 SINE Alu 0 147 2 1 943 924 184 118 5 chr5 47008899 47009085 -105528174 - MTD LTR MaLR -210 209 3 1 943 728 228 0 0 chr5 47009215 47009351 -105527908 + B1_Mur4 SINE Alu 2 137 -13 1 943 383 0 21 0 chr5 47009354 47009401 -105527858 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 2 943 23 33 0 0 chr5 47009439 47009469 -105527790 + AT_rich Low_complexity Low_complexity 1 30 0 2 943 319 265 10 0 chr5 47011115 47011217 -105526042 + CT-rich Low_complexity Low_complexity 2 104 0 2 943 23 78 0 0 chr5 47012193 47012244 -105525015 + AT_rich Low_complexity Low_complexity 1 51 0 2 943 210 289 0 0 chr5 47012301 47012353 -105524906 + PB1D10 SINE Alu 29 80 -37 2 943 981 78 0 0 chr5 47012371 47012524 -105524735 + (GA)n Simple_repeat Simple_repeat 2 154 0 2 943 32 43 0 0 chr5 47012691 47012737 -105524522 + AT_rich Low_complexity Low_complexity 1 46 0 2 943 210 191 14 42 chr5 47012776 47012847 -105524412 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 943 763 182 48 20 chr5 47012853 47012999 -105524260 - B1_Mur4 SINE Alu 0 150 1 2 943 38 0 0 0 chr5 47013036 47013074 -105524185 + AT_rich Low_complexity Low_complexity 1 38 0 2 943 587 117 0 10 chr5 47013074 47013178 -105524081 + (TATG)n Simple_repeat Simple_repeat 2 104 0 3 943 1049 150 155 0 chr5 47013546 47013575 -105523684 + RMER4B LTR ERVK 16 44 -541 3 943 396 0 0 0 chr5 47013575 47013619 -105523640 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 943 1049 150 155 0 chr5 47013619 47013789 -105523470 + RMER4B LTR ERVK 45 244 -341 3 943 3710 166 40 11 chr5 47013791 47014538 -105522721 - L1_Mur2 LINE L1 -552 5325 4557 3 943 180 200 0 0 chr5 47015802 47015852 -105521407 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 943 24 53 0 0 chr5 47016035 47016073 -105521186 + AT_rich Low_complexity Low_complexity 1 38 0 3 943 322 292 107 81 chr5 47016499 47016797 -105520462 + HAL1 LINE L1 1370 1675 -832 3 943 63 93 0 0 chr5 47017081 47017263 -105519996 + AT_rich Low_complexity Low_complexity 1 182 0 3 943 1830 221 75 31 chr5 47017323 47017711 -105519548 + Lx6 LINE L1 6913 7317 -143 3 943 24911 102 31 25 chr5 47017709 47022502 -105514757 + L1Md_F2 LINE L1 457 5585 -298 3 943 7347 65 24 6 chr5 47022503 47023482 -105513777 + L1Md_F2 LINE L1 5587 6582 0 3 943 474 269 22 7 chr5 47023482 47023617 -105513642 + Lx6 LINE L1 7308 7444 -16 3 943 353 293 75 0 chr5 47023625 47023793 -105513466 - L1MA4 LINE L1 -377 5935 5754 4 943 267 77 0 0 chr5 47023802 47023841 -105513418 + ORR1D2 LTR MaLR 1 39 -331 4 943 375 23 0 0 chr5 47023841 47023885 -105513374 + (TATG)n Simple_repeat Simple_repeat 2 45 0 4 943 1087 256 112 0 chr5 47023970 47024239 -105513020 + ORR1D2 LTR MaLR 17 315 -55 4 943 25 51 0 0 chr5 47024332 47024371 -105512888 + AT_rich Low_complexity Low_complexity 1 39 0 4 943 26 0 0 0 chr5 47024486 47024512 -105512747 + AT_rich Low_complexity Low_complexity 1 26 0 4 943 3294 107 71 14 chr5 47024920 47025470 -105511789 + Lx3B LINE L1 5712 6292 -681 4 943 1697 102 15 26 chr5 47025471 47025744 -105511515 + Lx3B LINE L1 6696 6965 -8 4 943 453 288 63 23 chr5 47026389 47026563 -105510696 - MLT1A0 LTR MaLR -12 353 173 4 943 280 188 137 28 chr5 47026710 47026805 -105510454 + B1_Mus2 SINE Alu 13 147 0 4 943 507 281 0 84 chr5 47029038 47029217 -105508042 + RSINE1 SINE B4 1 164 -1 4 943 506 297 35 35 chr5 47029754 47029956 -105507303 + Lx8 LINE L1 6091 6292 -1181 4 943 1091 312 95 26 chr5 47029960 47030464 -105506795 + Lx8 LINE L1 6402 6940 -533 4 943 240 250 0 171 chr5 47030464 47030546 -105506713 + RSINE1 SINE B4 98 165 0 5 943 4037 80 16 4 chr5 47030776 47031326 -105505933 + L1_Mus3 LINE L1 6082 6638 0 5 943 3690 63 24 6 chr5 47031363 47031860 -105505399 + L1_Mus2 LINE L1 6060 6565 -1 5 943 23 68 0 0 chr5 47031868 47031912 -105505347 + AT_rich Low_complexity Low_complexity 1 44 0 5 943 1016 264 155 8 chr5 47032131 47032619 -105504640 + Lx6 LINE L1 6168 6874 -586 5 943 372 316 17 8 chr5 47034052 47034170 -105503089 + Lx8 LINE L1 7056 7174 -299 4 943 390 261 258 10 chr5 47034578 47034787 -105502472 + Lx8 LINE L1 7182 7442 -31 4 943 25 0 0 0 chr5 47034802 47034827 -105502432 + AT_rich Low_complexity Low_complexity 1 25 0 5 943 374 104 0 25 chr5 47034999 47035078 -105502181 + (TCTCTG)n Simple_repeat Simple_repeat 6 82 0 5 943 357 297 18 18 chr5 47035086 47035199 -105502060 - PB1D10 SINE Alu 0 117 5 5 943 270 0 0 0 chr5 47036233 47036263 -105500996 + (A)n Simple_repeat Simple_repeat 1 30 0 5 943 21 0 0 0 chr5 47037295 47037316 -105499943 + AT_rich Low_complexity Low_complexity 1 21 0 5 943 576 259 72 29 chr5 47037503 47037901 -105499358 + L1MD LINE L1 4752 5166 -980 6 943 300 319 39 4 chr5 47037916 47038024 -105499235 + PB1D10 SINE Alu 11 117 0 6 943 585 333 29 14 chr5 47038209 47038416 -105498843 - Lx8 LINE L1 -160 7313 7104 6 943 746 283 10 15 chr5 47038604 47038805 -105498454 + B3 SINE B2 5 204 -12 6 943 237 65 0 0 chr5 47038805 47038836 -105498423 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 6 943 250 275 38 0 chr5 47039121 47039201 -105498058 + L1MD LINE L1 5785 5867 -297 6 943 26 64 0 0 chr5 47039449 47039496 -105497763 + AT_rich Low_complexity Low_complexity 1 47 0 6 943 563 285 0 0 chr5 47039496 47039633 -105497626 - B1_Mur2 SINE Alu -8 141 5 6 943 1387 219 63 21 chr5 47039661 47039993 -105497266 - Lx9 LINE L1 -199 7445 7100 6 943 459 0 0 0 chr5 47040002 47040053 -105497206 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 943 360 0 0 0 chr5 47040234 47040274 -105496985 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 943 1053 96 0 0 chr5 47040274 47040451 -105496808 + (GA)n Simple_repeat Simple_repeat 1 178 0 7 943 262 216 155 0 chr5 47040800 47040897 -105496362 - MT2A LTR ERVL -3 530 419 7 943 209 373 0 0 chr5 47040936 47041003 -105496256 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 943 195 42 0 0 chr5 47041153 47041177 -105496082 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 7 943 213 265 39 48 chr5 47041192 47041295 -105495964 - L2 LINE L2 -1593 1826 1725 7 943 587 291 55 122 chr5 47041470 47041799 -105495460 + MTE2a LTR MaLR 14 320 -59 7 943 227 338 129 38 chr5 47041841 47042050 -105495209 - L2 LINE L2 -1888 1531 1304 7 943 1329 243 33 80 chr5 47042199 47042564 -105494695 + MTEb LTR MaLR 1 353 -26 7 943 228 67 0 0 chr5 47042564 47042594 -105494665 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 943 1329 243 33 80 chr5 47042594 47042626 -105494633 + MTEb LTR MaLR 354 379 0 7 943 1142 77 0 0 chr5 47042639 47042782 -105494477 + B1_Mus1 SINE Alu 1 143 -5 7 943 495 0 0 0 chr5 47042787 47042842 -105494417 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 7 943 585 347 146 6 chr5 47042842 47043164 -105494095 + MTE-int LTR MaLR 2 368 -1212 8 943 1426 291 144 16 chr5 47043190 47043697 -105493562 + MTE-int LTR MaLR 555 1126 -454 8 943 585 94 0 0 chr5 47043699 47043784 -105493475 + (TG)n Simple_repeat Simple_repeat 2 86 0 8 943 494 303 75 31 chr5 47043798 47043958 -105493301 - B3A SINE B2 -30 168 2 8 943 25 0 0 0 chr5 47043987 47044012 -105493247 + AT_rich Low_complexity Low_complexity 1 25 0 8 943 723 104 0 0 chr5 47044056 47044162 -105493097 + (TTTC)n Simple_repeat Simple_repeat 3 108 0 8 943 836 330 65 44 chr5 47044273 47044640 -105492619 + MTEb LTR MaLR 1 375 -4 8 943 3951 75 12 30 chr5 47045703 47046267 -105490992 - L1_Mus3 LINE L1 -1 6637 6084 8 943 1378 56 17 0 chr5 47046267 47046445 -105490814 + L1_Mus3 LINE L1 5899 6079 -559 8 943 232 364 84 37 chr5 47046552 47046766 -105490493 + MIR SINE MIR 6 229 -33 8 943 2149 107 3 42 chr5 47047535 47047868 -105489391 + L1_Mus2 LINE L1 6247 6566 0 8 943 221 178 15 61 chr5 47048029 47048095 -105489164 + A-rich Low_complexity Low_complexity 3 65 0 8 943 224 246 46 0 chr5 47048236 47048301 -105488958 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 9 943 995 270 84 29 chr5 47048318 47048380 -105488879 - B4A SINE B4 -2 290 233 9 943 1001 258 103 43 chr5 47048380 47048729 -105488530 + ORR1D2 LTR MaLR 1 370 0 9 943 995 270 84 29 chr5 47048729 47048941 -105488318 - B4A SINE B4 -60 232 1 9 943 533 384 58 16 chr5 47049251 47049561 -105487698 - ORR1E LTR MaLR -9 350 28 9 943 872 274 82 119 chr5 47049619 47050257 -105487002 - RLTR18 LTR ERVK -2 614 1 9 943 1231 34 0 0 chr5 47050349 47050495 -105486764 + B1_Mm SINE Alu 2 147 0 9 943 234 0 0 0 chr5 47050495 47050521 -105486738 + (A)n Simple_repeat Simple_repeat 1 26 0 9 943 269 226 12 0 chr5 47050681 47050765 -105486494 + (TA)n Simple_repeat Simple_repeat 1 85 0 9 943 264 207 95 24 chr5 47050790 47050874 -105486385 + Charlie4a DNA MER1_type 370 459 -49 9 943 185 167 0 40 chr5 47051245 47051295 -105485964 + GA-rich Low_complexity Low_complexity 5 52 0 9 943 936 135 11 17 chr5 47051306 47051487 -105485772 + GA-rich Low_complexity Low_complexity 1 180 0 9 943 1017 128 0 16 chr5 47051491 47051674 -105485585 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 1 943 272 292 0 14 chr5 47051674 47051747 -105485512 + GA-rich Low_complexity Low_complexity 2 73 0 1 943 256 350 41 52 chr5 47052486 47052658 -105484601 + Tigger8 DNA MER2_type 8 177 -489 1 943 31 0 0 0 chr5 47053415 47053446 -105483813 + AT_rich Low_complexity Low_complexity 1 31 0 1 943 786 53 96 9 chr5 47054426 47054541 -105482718 - B1_Mus1 SINE Alu 0 148 24 1 943 356 240 9 103 chr5 47054451 47054567 -105482692 - MT2B LTR ERVL -337 264 160 1 943 180 0 0 0 chr5 47054592 47054612 -105482647 + (TCC)n Simple_repeat Simple_repeat 3 22 0 1 943 312 27 0 0 chr5 47054728 47054765 -105482494 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 944 1089 106 0 0 chr5 47055275 47055416 -105481843 + B1_Mus2 SINE Alu 2 142 -5 1 944 183 80 0 0 chr5 47055422 47055447 -105481812 + (A)n Simple_repeat Simple_repeat 1 25 0 1 944 5258 168 60 4 chr5 47055965 47056901 -105480358 + Lx4A LINE L1 6065 7052 -6 1 944 21 36 0 0 chr5 47056901 47056929 -105480330 + AT_rich Low_complexity Low_complexity 1 28 0 1 944 1034 324 61 11 chr5 47058377 47058736 -105478523 + MTEa LTR MaLR 3 379 0 1 944 189 306 20 0 chr5 47059046 47059095 -105478164 + L2c LINE L2 3268 3317 -70 1 944 204 158 0 0 chr5 47059546 47059584 -105477675 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 944 492 300 124 63 chr5 47061738 47062101 -105475158 - MLT1B LTR MaLR -2 388 4 1 944 525 327 36 78 chr5 47066072 47066260 -105470999 - ORR1E LTR MaLR -16 343 163 1 944 1095 76 0 27 chr5 47066260 47066393 -105470866 + B1_Mus1 SINE Alu 5 137 -11 1 944 225 0 0 0 chr5 47066393 47066418 -105470841 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 944 1095 76 0 27 chr5 47066418 47066432 -105470827 + B1_Mus1 SINE Alu 138 148 0 1 944 525 327 36 78 chr5 47066432 47066551 -105470708 - ORR1E LTR MaLR -197 162 49 1 944 225 216 0 38 chr5 47067133 47067186 -105470073 + B1F SINE Alu 48 98 -51 1 944 4549 65 2 3 chr5 47068724 47069309 -105467950 - L1_Mus1 LINE L1 0 6567 5984 1 944 272 298 14 97 chr5 47069725 47069870 -105467389 + L2a LINE L2 3230 3362 -64 1 944 23249 142 12 4 chr5 47070928 47074320 -105462939 - L1_Mus4 LINE L1 -6 6630 3232 1 944 4450 52 14 2 chr5 47074320 47074873 -105462386 + LTRIS2 LTR ERV1 5 564 0 1 944 23249 158 16 6 chr5 47074873 47075249 -105462010 - L1_Mus4 LINE L1 -2652 3231 2860 1 944 3254 41 5 2 chr5 47075249 47075644 -105461615 - MTA_Mm LTR MaLR 0 396 1 1 944 23249 158 16 6 chr5 47075644 47076437 -105460822 - L1_Mus4 LINE L1 -3024 2859 2058 1 944 342 0 0 0 chr5 47076437 47076475 -105460784 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 944 23249 158 16 6 chr5 47076475 47077009 -105460250 - L1_Mus4 LINE L1 -3826 2057 1489 1 944 3179 61 5 0 chr5 47077009 47077403 -105459856 + MTA_Mm LTR MaLR 1 396 0 1 944 23249 158 16 6 chr5 47077403 47077493 -105459766 - L1_Mus4 LINE L1 -4395 1488 1399 1 944 4078 76 3 37 chr5 47077493 47078064 -105459195 - L1_Mus2 LINE L1 -17 6549 5998 1 944 3431 81 4 0 chr5 47078064 47078545 -105458714 + L1_Mus2 LINE L1 5587 6069 -497 1 944 1860 257 9 16 chr5 47078543 47079100 -105458159 - L1VL4 LINE L1 -5534 768 216 1 944 258 222 143 0 chr5 47079200 47079263 -105457996 - B2_Mm2 SINE B2 -122 73 2 1 944 1958 173 170 55 chr5 47080087 47080600 -105456659 - RLTR25A LTR ERVK -24 1079 508 1 944 396 171 0 0 chr5 47080602 47080684 -105456575 + A-rich Low_complexity Low_complexity 1 82 0 1 944 2330 179 64 37 chr5 47080739 47081226 -105456033 - RLTR25A LTR ERVK -603 500 1 1 944 36 40 0 0 chr5 47081238 47081288 -105455971 + AT_rich Low_complexity Low_complexity 1 50 0 1 944 509 251 234 0 chr5 47081408 47081575 -105455684 + MTD LTR MaLR 1 206 -213 1 944 1006 232 134 18 chr5 47081580 47081596 -105455663 - ORR1A1 LTR MaLR 0 367 351 1 944 3100 90 2 2 chr5 47081596 47082018 -105455241 + L1_Mus2 LINE L1 6145 6566 0 1 944 1700 168 20 5 chr5 47082018 47082330 -105454929 - ORR1A1 LTR MaLR -17 350 1 1 944 5670 165 36 8 chr5 47082336 47083760 -105453499 - Lx5 LINE L1 -726 6324 4833 1 944 2883 219 65 9 chr5 47083750 47084426 -105452833 + Lx5 LINE L1 6337 7050 0 1 944 263 161 0 18 chr5 47084434 47084491 -105452768 + A-rich Low_complexity Low_complexity 2 57 0 1 944 1548 149 4 29 chr5 47084493 47084769 -105452490 + ORR1A4 LTR MaLR 61 329 0 1 944 221 182 18 0 chr5 47085859 47085914 -105451345 + (CATA)n Simple_repeat Simple_repeat 2 57 0 1 944 266 231 77 0 chr5 47086232 47086297 -105450962 + Lx8 LINE L1 6350 6419 -1054 1 944 6414 36 1 6 chr5 47086406 47087198 -105450061 + L1Md_F3 LINE L1 5783 6570 -14 1 944 1166 315 63 0 chr5 47087223 47087617 -105449642 + MTD LTR MaLR 1 419 0 1 944 22 0 0 0 chr5 47087830 47087852 -105449407 + AT_rich Low_complexity Low_complexity 1 22 0 1 944 262 246 0 14 chr5 47087886 47087956 -105449303 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 1 944 328 283 0 78 chr5 47088793 47088908 -105448351 + B4A SINE B4 186 291 -1 1 944 12448 30 8 0 chr5 47089162 47091406 -105445853 - L1Md_T LINE L1 0 6582 4329 1 944 22 0 0 0 chr5 47091406 47091428 -105445831 + AT_rich Low_complexity Low_complexity 1 22 0 1 944 36285 36 0 3 chr5 47091431 47097579 -105439680 - L1Md_T LINE L1 -2 6583 355 1 944 2259 297 41 55 chr5 47097629 47097739 -105439520 - Lx8 LINE L1 -131 7342 7237 1 944 212 0 36 0 chr5 47097739 47097767 -105439492 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1 944 2259 297 41 55 chr5 47097767 47098345 -105438914 - Lx8 LINE L1 -237 7236 6653 1 944 2385 217 15 79 chr5 47098345 47098955 -105438304 - RMER15 LTR ERVL -3 572 2 1 944 2259 297 41 55 chr5 47098955 47099239 -105438020 - Lx8 LINE L1 -821 6652 6384 1 944 513 277 48 159 chr5 47099339 47099798 -105437461 - RMER21B LTR ERV1 -345 497 90 1 944 216 97 0 0 chr5 47099903 47099934 -105437325 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 1 944 273 183 0 0 chr5 47100069 47100129 -105437130 + (CATATA)n Simple_repeat Simple_repeat 4 63 0 1 944 530 361 114 4 chr5 47100195 47100423 -105436836 - B4A SINE B4 -5 287 35 1 944 32 0 0 0 chr5 47100609 47100641 -105436618 + AT_rich Low_complexity Low_complexity 1 32 0 1 944 372 22 0 0 chr5 47101719 47101764 -105435495 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 944 411 151 0 40 chr5 47101765 47101841 -105435418 + ORR1A4 LTR MaLR 232 304 -25 1 944 230 73 0 24 chr5 47101848 47101890 -105435369 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 944 231 189 0 0 chr5 47102240 47102293 -105434966 + GA-rich Low_complexity Low_complexity 1 53 0 1 944 1656 151 89 45 chr5 47102298 47102611 -105434648 + ORR1A4 LTR MaLR 1 327 -2 1 944 198 0 0 0 chr5 47102706 47102728 -105434531 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 1 944 689 233 0 26 chr5 47102765 47102919 -105434340 + B1_Mur4 SINE Alu 1 150 0 1 944 318 270 10 10 chr5 47102990 47103091 -105434168 + (CATA)n Simple_repeat Simple_repeat 3 103 0 1 944 465 76 0 0 chr5 47103114 47103180 -105434079 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 944 414 301 112 29 chr5 47103656 47103896 -105433363 - MLT1D LTR MaLR -59 446 187 1 944 1106 174 58 5 chr5 47103923 47104131 -105433128 + URR1B DNA MER1_type 7 225 0 1 944 422 315 31 48 chr5 47103928 47104155 -105433104 - CYRA11_Mm Unknown Y-chromosome -242 375 153 1 944 419 177 53 0 chr5 47104561 47104674 -105432585 - Lx9 LINE L1 -1 7643 7525 1 944 210 71 0 0 chr5 47104674 47104702 -105432557 + (A)n Simple_repeat Simple_repeat 1 28 0 1 944 1253 167 18 7 chr5 47104702 47104974 -105432285 + Lx3C LINE L1 3878 4152 -1725 1 944 5808 175 36 14 chr5 47104955 47106891 -105430368 + Lx3C LINE L1 4962 6945 -31 1 944 28 29 0 0 chr5 47106892 47106927 -105430332 + AT_rich Low_complexity Low_complexity 1 35 0 1 944 643 229 42 149 chr5 47106960 47107201 -105430058 + Lx9 LINE L1 7034 7248 -396 1 944 1786 268 67 100 chr5 47107224 47107919 -105429340 - Lx8 LINE L1 -3 7470 6804 1 944 705 24 0 0 chr5 47107919 47108002 -105429257 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 944 1786 270 64 94 chr5 47108002 47108203 -105429056 - Lx8 LINE L1 -670 6803 6593 1 944 1943 153 20 20 chr5 47108206 47108553 -105428706 - RLTR25B LTR ERVK 0 1028 682 1 944 423 229 19 28 chr5 47108557 47108665 -105428594 - RLTR23 LTR ERV1 0 430 324 1 944 3003 197 58 33 chr5 47109112 47109780 -105427479 - RLTR25B LTR ERVK -334 694 10 1 944 583 350 23 38 chr5 47109814 47109866 -105427393 - Lx8 LINE L1 -898 6575 6524 1 944 519 17 0 0 chr5 47109866 47109926 -105427333 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 944 583 350 23 38 chr5 47109926 47110215 -105427044 - Lx8 LINE L1 -950 6523 6240 1 944 24 53 0 0 chr5 47110252 47110290 -105426969 + AT_rich Low_complexity Low_complexity 1 38 0 1 944 270 201 48 41 chr5 47110697 47110842 -105426417 + RMER17D2 LTR ERVK 381 526 -283 1 944 311 282 48 0 chr5 47111257 47111360 -105425899 - MER5A1 DNA MER1_type -47 119 12 1 944 209 111 28 0 chr5 47111407 47111443 -105425816 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 1 944 325 276 6 2 chr5 47112158 47112246 -105425013 + PB1D10 SINE Alu 14 103 -46 1 944 612 201 157 26 chr5 47112241 47112394 -105424865 - B3 SINE B2 -5 211 39 1 944 513 32 0 0 chr5 47112453 47112516 -105424743 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1 944 810 319 103 21 chr5 47112734 47112968 -105424291 - B4 SINE B4 -4 288 36 1 944 21 0 0 0 chr5 47113073 47113094 -105424165 + AT_rich Low_complexity Low_complexity 1 21 0 1 944 22 0 0 0 chr5 47113151 47113173 -105424086 + AT_rich Low_complexity Low_complexity 1 22 0 1 944 22 0 0 0 chr5 47113401 47113423 -105423836 + AT_rich Low_complexity Low_complexity 1 22 0 1 944 252 0 0 0 chr5 47113510 47113538 -105423721 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1 944 180 152 0 0 chr5 47114254 47114287 -105422972 + CT-rich Low_complexity Low_complexity 1 33 0 1 944 509 333 15 0 chr5 47114309 47114444 -105422815 - RSINE1 SINE B4 -19 146 10 1 944 248 258 95 21 chr5 47114642 47114737 -105422522 - RLTR20B1 LTR ERVK 0 541 440 1 944 183 204 0 0 chr5 47114738 47114782 -105422477 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 944 2302 136 66 12 chr5 47114822 47115233 -105422026 - Lx2B LINE L1 -10 6990 6558 1 944 392 236 175 21 chr5 47115295 47115438 -105421821 - RLTR20B1 LTR ERVK -350 213 49 1 944 517 325 70 16 chr5 47115448 47115692 -105421567 - Lx8 LINE L1 -178 7295 7039 1 944 3095 32 0 3 chr5 47116129 47116502 -105420757 - L1Md_A LINE L1 0 6582 6211 1 944 23 0 0 0 chr5 47116740 47116763 -105420496 + AT_rich Low_complexity Low_complexity 1 23 0 1 944 370 245 19 38 chr5 47116781 47116887 -105420372 + B3 SINE B2 29 132 -84 1 944 538 282 19 19 chr5 47116922 47117081 -105420178 + MLT1A0 LTR MaLR 186 344 -21 2 944 212 145 0 61 chr5 47117133 47117199 -105420060 + A-rich Low_complexity Low_complexity 1 62 0 2 944 1055 289 58 15 chr5 47118013 47118413 -105418846 + MTD LTR MaLR 3 419 0 2 944 631 311 63 25 chr5 47119736 47119996 -105417263 + ORR1E LTR MaLR 1 252 -118 2 944 237 33 0 0 chr5 47120036 47120066 -105417193 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 944 3586 231 54 29 chr5 47120082 47121029 -105416230 + Lx9 LINE L1 6632 7602 -42 2 944 661 238 21 37 chr5 47121480 47121668 -105415591 + B3A SINE B2 3 187 -11 2 944 247 85 43 0 chr5 47121972 47122019 -105415240 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 2 944 337 295 60 69 chr5 47122622 47122865 -105414394 + MIR SINE MIR 32 267 -1 2 944 310 252 95 19 chr5 47125141 47125246 -105412013 - Lx6 LINE L1 -6 7454 7342 2 944 304 260 0 20 chr5 47125671 47125773 -105411486 + Lx9 LINE L1 7537 7636 -8 2 944 381 331 129 16 chr5 47125778 47126275 -105410984 + L1M2 LINE L1 2174 2726 -3417 2 944 309 51 0 0 chr5 47126606 47126645 -105410614 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 944 2053 148 14 28 chr5 47126898 47127259 -105410000 + ORR1B1 LTR MaLR 39 394 0 2 944 3241 67 7 0 chr5 47127584 47128002 -105409257 + L1_Mus1 LINE L1 6144 6564 -3 2 944 348 133 0 0 chr5 47128782 47128842 -105408417 + (TATG)n Simple_repeat Simple_repeat 4 63 0 2 944 456 62 0 0 chr5 47128847 47128911 -105408348 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 944 323 286 158 78 chr5 47128920 47129190 -105408069 - Lx9 LINE L1 -297 7347 7057 2 944 23 54 0 0 chr5 47129262 47129299 -105407960 + AT_rich Low_complexity Low_complexity 1 37 0 2 944 791 241 65 16 chr5 47130018 47130263 -105406996 + Lx5 LINE L1 6069 6325 -725 2 944 2650 52 2 146 chr5 47130573 47131025 -105406234 + RLTR10 LTR ERVK 1 387 -3 2 944 280 315 0 11 chr5 47133810 47133903 -105403356 - MIR SINE MIR -78 184 93 2 944 668 282 148 33 chr5 47134150 47134480 -105402779 - MLT1B LTR MaLR -15 375 8 2 944 952 108 7 0 chr5 47134587 47134726 -105402533 - B1_Mus1 SINE Alu -1 147 8 2 944 485 219 23 39 chr5 47134875 47135003 -105402256 - RMER1C Other Other -8 1334 1209 2 944 415 152 0 0 chr5 47135006 47135072 -105402187 + RMER1C Other Other 1115 1180 -162 2 944 426 39 0 0 chr5 47135161 47135213 -105402046 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 944 333 0 0 0 chr5 47135213 47135249 -105402010 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 944 1222 255 61 29 chr5 47135259 47135638 -105401621 - Lx6 LINE L1 -43 7417 7027 2 944 227 75 25 0 chr5 47136489 47136517 -105400742 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 944 297 51 0 0 chr5 47136517 47136556 -105400703 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 944 227 75 25 0 chr5 47136556 47136567 -105400692 + (TA)n Simple_repeat Simple_repeat 1 11 0 2 944 21 0 0 0 chr5 47138031 47138052 -105399207 + AT_rich Low_complexity Low_complexity 1 21 0 2 944 255 355 128 27 chr5 47138374 47138672 -105398587 - L1MC1 LINE L1 -18 6315 5988 2 944 1393 11 18 13 chr5 47138700 47139087 -105398172 + (CA)n Simple_repeat Simple_repeat 1 389 0 2 944 238 326 35 64 chr5 47139172 47139277 -105397982 - MER34A LTR ERV1 -368 203 107 2 944 237 33 0 0 chr5 47139277 47139307 -105397952 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 944 238 326 35 64 chr5 47139307 47139404 -105397855 - MER34A LTR ERV1 -465 106 7 2 944 769 273 84 14 chr5 47139406 47139774 -105397485 - L1MC LINE L1 -1302 4844 4451 2 944 270 0 0 0 chr5 47139778 47139808 -105397451 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 944 22 56 0 0 chr5 47139936 47139972 -105397287 + AT_rich Low_complexity Low_complexity 1 36 0 2 944 29 47 0 0 chr5 47140055 47140098 -105397161 + AT_rich Low_complexity Low_complexity 1 43 0 2 944 523 180 20 0 chr5 47140251 47140351 -105396908 + B1_Mus2 SINE Alu 46 147 0 2 944 192 97 0 0 chr5 47140352 47140383 -105396876 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 2 944 6497 125 29 7 chr5 47140516 47141532 -105395727 - Lx LINE L1 0 6654 5617 2 944 5218 155 10 0 chr5 47141521 47142397 -105394862 + Lx LINE L1 4737 5621 -262 2 944 438 20 0 0 chr5 47142422 47142473 -105394786 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 944 1302 271 26 10 chr5 47142488 47142876 -105394383 - Lx9 LINE L1 -231 7413 7020 2 944 492 167 42 85 chr5 47142957 47143075 -105394184 + ORR1D1 LTR MaLR 9 121 -253 2 944 275 308 0 13 chr5 47143170 47143249 -105394010 + PB1D10 SINE Alu 8 85 -32 2 944 227 354 40 0 chr5 47143261 47143360 -105393899 + B1_Mus1 SINE Alu 10 112 -36 2 944 1934 171 47 96 chr5 47143404 47143871 -105393388 + RLTR41 LTR ERV1 3 446 0 2 944 385 100 83 0 chr5 47143921 47143981 -105393278 - B1_Mus1 SINE Alu -81 67 3 2 944 525 55 0 14 chr5 47143981 47144046 -105393213 + B1_Mus2 SINE Alu 84 147 0 2 944 23 33 0 0 chr5 47144046 47144076 -105393183 + AT_rich Low_complexity Low_complexity 1 30 0 2 944 2814 78 44 8 chr5 47144097 47144483 -105392776 - MTB LTR MaLR 0 400 1 2 944 27 0 0 0 chr5 47144597 47144624 -105392635 + AT_rich Low_complexity Low_complexity 1 27 0 2 944 933 154 0 6 chr5 47146470 47146627 -105390632 - B2_Mm2 SINE B2 -5 190 35 2 944 477 0 0 0 chr5 47147302 47147355 -105389904 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 944 224 367 108 24 chr5 47148496 47148708 -105388551 - MIR SINE MIR -16 246 17 2 944 423 317 31 66 chr5 47149707 47149964 -105387295 + Lx8 LINE L1 7209 7456 -17 2 944 27 0 0 0 chr5 47150170 47150197 -105387062 + AT_rich Low_complexity Low_complexity 1 27 0 2 944 298 42 42 0 chr5 47150758 47150806 -105386453 + (CAAAAA)n Simple_repeat Simple_repeat 3 52 0 2 944 193 29 0 56 chr5 47150825 47150861 -105386398 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2 944 947 83 80 96 chr5 47151070 47151257 -105386002 - B2_Mm2 SINE B2 -10 185 2 2 944 288 200 0 0 chr5 47152004 47152104 -105385155 + (TA)n Simple_repeat Simple_repeat 1 100 0 2 944 181 372 24 81 chr5 47152265 47152388 -105384871 + MIR SINE MIR 75 190 -72 2 944 37953 41 0 3 chr5 47152768 47158988 -105378271 - L1Md_T LINE L1 -1 6584 285 2 944 321 296 28 17 chr5 47158988 47159167 -105378092 - Lx9 LINE L1 -74 7570 7390 2 944 2472 196 13 17 chr5 47159172 47159645 -105377614 - RLTR17 LTR ERVK 0 692 222 2 944 459 141 0 0 chr5 47159649 47159727 -105377532 + (TATG)n Simple_repeat Simple_repeat 1 78 0 2 944 4734 244 81 50 chr5 47159741 47161594 -105375665 - L1_Rod LINE L1 -124 5723 3814 2 944 229 203 0 17 chr5 47161727 47161787 -105375472 + (CCA)n Simple_repeat Simple_repeat 3 61 0 2 944 557 327 72 53 chr5 47162115 47162377 -105374882 - B4 SINE B4 -18 274 8 2 944 235 337 17 9 chr5 47162821 47162942 -105374317 + MIRb SINE MIR 74 200 -68 2 944 185 65 0 31 chr5 47162954 47162986 -105374273 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 2 944 304 306 136 142 chr5 47164190 47164457 -105372802 - B4 SINE B4 -34 258 1 2 944 686 141 8 0 chr5 47164476 47164604 -105372655 + (CA)n Simple_repeat Simple_repeat 1 129 0 2 944 621 0 0 0 chr5 47164717 47164786 -105372473 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 2 944 219 173 0 0 chr5 47164787 47164839 -105372420 + CT-rich Low_complexity Low_complexity 1 52 0 2 944 295 326 70 44 chr5 47165591 47165889 -105371370 - L1MC4a LINE L1 -288 7707 7402 2 944 22 35 0 0 chr5 47165958 47165987 -105371272 + AT_rich Low_complexity Low_complexity 1 29 0 2 944 343 217 82 55 chr5 47166012 47166158 -105371101 - L1MC4a LINE L1 -816 7066 6917 2 944 12148 80 12 6 chr5 47166175 47168506 -105368753 - L1Md_F2 LINE L1 -14 6568 4219 2 944 261 0 0 0 chr5 47168506 47168535 -105368724 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2 944 7645 36 0 2 chr5 47168537 47169457 -105367802 - L1Md_F3 LINE L1 -9 6575 5658 2 944 3747 57 0 0 chr5 47169442 47169901 -105367358 + L1Md_F3 LINE L1 5174 5632 -251 2 944 882 58 0 0 chr5 47169899 47170019 -105367240 - L1Md_F2 LINE L1 -1655 4228 4109 2 944 619 270 123 25 chr5 47170663 47171202 -105366057 + L1_Mur3 LINE L1 5110 5734 -563 2 944 22 35 0 0 chr5 47171244 47171273 -105365986 + AT_rich Low_complexity Low_complexity 1 29 0 2 944 23 0 0 0 chr5 47172076 47172099 -105365160 + AT_rich Low_complexity Low_complexity 1 23 0 2 944 686 271 25 20 chr5 47172101 47172297 -105364962 - B3A SINE B2 0 198 2 2 944 1169 55 0 0 chr5 47172460 47172606 -105364653 + B1_Mus2 SINE Alu 1 146 -1 2 944 181 329 76 0 chr5 47173580 47173659 -105363600 + MIR SINE MIR 158 242 -20 2 944 966 277 127 12 chr5 47173704 47174036 -105363223 - ORR1D2 LTR MaLR 0 370 1 2 944 233 399 28 23 chr5 47174304 47174481 -105362778 + MIRb SINE MIR 34 211 -57 2 944 1362 258 3 34 chr5 47174688 47175013 -105362246 - Lx5 LINE L1 -9 7041 6727 2 944 2466 210 28 12 chr5 47175021 47175517 -105361742 + RMER20A LTR ERVK 11 514 -2 2 944 2545 190 30 43 chr5 47175518 47176058 -105361201 - Lx5 LINE L1 -318 6732 6200 2 944 280 282 0 53 chr5 47176739 47176814 -105360445 - PB1D10 SINE Alu 0 117 47 2 944 461 71 14 0 chr5 47177011 47177081 -105360178 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 944 24 0 0 0 chr5 47177266 47177290 -105359969 + AT_rich Low_complexity Low_complexity 1 24 0 2 944 300 275 55 97 chr5 47177911 47178076 -105359183 - MER5A DNA MER1_type -6 183 26 2 944 186 308 35 88 chr5 47178120 47178234 -105359025 - MIRc SINE MIR -104 164 57 2 944 239 268 196 0 chr5 47179544 47179641 -105357618 + MIR SINE MIR 124 239 -23 2 944 1011 223 5 5 chr5 47180167 47180388 -105356871 + URR1B DNA MER1_type 2 222 -3 2 944 24 32 0 0 chr5 47181473 47181504 -105355755 + AT_rich Low_complexity Low_complexity 1 31 0 3 944 528 16 0 0 chr5 47183421 47183482 -105353777 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 944 515 153 0 0 chr5 47184109 47184194 -105353065 - L1_Mur1 LINE L1 -4209 1677 1593 3 944 2046 108 0 20 chr5 47184196 47184498 -105352761 + Lx3_Mus LINE L1 6713 7008 -1 3 944 341 111 32 0 chr5 47184524 47184587 -105352672 + (GAAAA)n Simple_repeat Simple_repeat 5 69 0 3 945 185 222 103 72 chr5 47187524 47187621 -105349638 + L3 LINE CR1 81 180 -4309 3 945 228 35 0 0 chr5 47187733 47187762 -105349497 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 945 1004 97 0 0 chr5 47187844 47187978 -105349281 + B1_Mus2 SINE Alu 1 134 -13 3 945 195 42 0 0 chr5 47187978 47188002 -105349257 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3 945 329 341 29 73 chr5 47188049 47188185 -105349074 + MLT1A LTR MaLR 23 152 -222 3 945 495 328 100 33 chr5 47188818 47189118 -105348141 + MLT1B LTR MaLR 1 320 -70 3 945 246 62 0 0 chr5 47189141 47189173 -105348086 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 945 261 245 132 38 chr5 47189362 47189468 -105347791 - MIR3 SINE MIR -7 201 86 3 945 23 33 0 0 chr5 47189530 47189560 -105347699 + AT_rich Low_complexity Low_complexity 1 30 0 3 945 220 253 125 12 chr5 47190366 47190446 -105346813 - MIR3 SINE MIR -7 201 113 3 945 18095 104 15 14 chr5 47190660 47192006 -105345253 - L1_Mus3 LINE L1 0 6638 5299 3 945 6098 65 1 14 chr5 47192006 47192818 -105344441 - L1Md_F2 LINE L1 -2 6580 5779 3 945 18095 108 21 23 chr5 47192818 47195120 -105342139 - L1_Mus3 LINE L1 -585 5298 2994 3 945 4084 117 21 37 chr5 47195113 47195769 -105341490 - L1VL1 LINE L1 -5584 838 193 3 945 990 101 108 0 chr5 47195962 47196120 -105341139 - B2_Mm2 SINE B2 -19 176 2 3 945 195 321 67 30 chr5 47196572 47196707 -105340552 + L2c LINE L2 2910 3049 -338 3 945 325 307 0 95 chr5 47197159 47197285 -105339974 - PB1 SINE Alu -13 114 1 3 945 6703 67 4 31 chr5 47198240 47198418 -105338841 - L1_Mus2 LINE L1 0 6566 6390 3 945 4023 132 132 57 chr5 47198418 47199259 -105338000 + RMER17A2 LTR ERVK 3 906 0 3 945 6703 67 4 31 chr5 47199259 47199990 -105337269 - L1_Mus2 LINE L1 -177 6389 5681 3 945 3687 117 2 2 chr5 47199987 47200527 -105336732 + L1_Mus2 LINE L1 5130 5669 -214 3 945 23 0 0 0 chr5 47200794 47200817 -105336442 + AT_rich Low_complexity Low_complexity 1 23 0 3 945 287 398 40 30 chr5 47202325 47202527 -105334732 - RMER15 LTR ERVL -16 559 356 3 945 237 338 20 87 chr5 47202607 47202756 -105334503 - Lx8 LINE L1 -305 7168 7030 3 945 28 29 0 0 chr5 47203455 47203490 -105333769 + AT_rich Low_complexity Low_complexity 1 35 0 3 945 792 312 28 93 chr5 47203574 47203962 -105333297 + ORR1D2 LTR MaLR 8 370 0 3 945 396 275 50 14 chr5 47205330 47205470 -105331789 + B1F2 SINE Alu 5 149 0 3 945 22 0 0 0 chr5 47205612 47205634 -105331625 + AT_rich Low_complexity Low_complexity 1 22 0 3 945 211 383 65 27 chr5 47205700 47205885 -105331374 + L2 LINE L2 2735 2926 -493 3 945 1029 235 31 63 chr5 47206302 47206651 -105330608 - Lx7 LINE L1 0 7696 7359 3 945 209 33 0 32 chr5 47206670 47206701 -105330558 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 3 945 242 73 24 0 chr5 47206720 47206761 -105330498 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 3 945 7880 54 3 11 chr5 47206842 47208098 -105329161 - L1Md_F2 LINE L1 0 6582 5337 3 945 6286 82 1 2 chr5 47208112 47208968 -105328291 + L1Md_F2 LINE L1 4465 5319 -564 3 945 4915 229 111 73 chr5 47208961 47211024 -105326235 - Lx7 LINE L1 -376 7320 5173 3 945 3273 199 54 79 chr5 47211121 47212036 -105325223 - Lx7 LINE L1 -2939 2941 2059 3 945 186 103 0 0 chr5 47212036 47212065 -105325194 + (TGG)n Simple_repeat Simple_repeat 3 31 0 3 945 261 0 0 0 chr5 47212067 47212096 -105325163 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 945 3273 199 54 79 chr5 47212096 47212211 -105325048 - Lx7 LINE L1 -3822 2058 1934 3 945 4545 88 3 9 chr5 47212209 47212865 -105324394 + L1_Mur1 LINE L1 3708 4359 -1527 3 945 3620 197 122 65 chr5 47212857 47214559 -105322700 - Lx7 LINE L1 -4246 1634 19 3 945 760 288 18 5 chr5 47215025 47215245 -105322014 - MER2 DNA MER2_type -7 338 116 3 945 182 208 21 0 chr5 47215334 47215382 -105321877 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 945 276 125 0 59 chr5 47216488 47216573 -105320686 + A-rich Low_complexity Low_complexity 3 82 0 3 945 226 106 43 0 chr5 47216637 47216684 -105320575 + (TTTTG)n Simple_repeat Simple_repeat 3 51 0 3 945 375 23 0 0 chr5 47216714 47216758 -105320501 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 3 945 1483 197 11 95 chr5 47217322 47217503 -105319756 - ORR1A4 LTR MaLR 0 329 152 3 945 1053 73 7 0 chr5 47217503 47217639 -105319620 + B1_Mus1 SINE Alu 2 138 -10 3 945 296 24 0 24 chr5 47217639 47217681 -105319578 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 945 225 0 0 0 chr5 47217681 47217705 -105319554 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 945 1483 197 11 95 chr5 47217705 47217880 -105319379 - ORR1A4 LTR MaLR -178 151 3 3 945 284 336 50 50 chr5 47217898 47218058 -105319201 + MTEa LTR MaLR 22 181 -198 3 945 283 352 55 91 chr5 47218407 47218609 -105318650 + RMER10A LTR ERVL 12 206 -236 3 945 728 74 9 0 chr5 47218609 47218717 -105318542 + (TC)n Simple_repeat Simple_repeat 2 110 0 3 945 283 254 79 0 chr5 47218717 47218780 -105318479 + RMER10A LTR ERVL 207 221 -221 3 945 846 334 20 34 chr5 47219504 47219857 -105317402 + MLT1A0 LTR MaLR 13 360 -5 3 945 267 152 0 0 chr5 47220015 47220061 -105317198 + T-rich Low_complexity Low_complexity 1 46 0 3 945 1121 71 0 0 chr5 47220062 47220203 -105317056 - B1_Mus2 SINE Alu -2 145 5 3 945 499 364 0 25 chr5 47220825 47220983 -105316276 + RSINE1 SINE B4 11 164 -1 3 945 192 77 0 0 chr5 47221963 47221989 -105315270 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 945 465 19 0 0 chr5 47225130 47225184 -105312075 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 945 450 0 0 0 chr5 47226018 47226068 -105311191 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 945 3465 233 55 9 chr5 47226075 47226928 -105310331 - Lx9 LINE L1 -213 7431 6540 3 945 2706 66 26 0 chr5 47227631 47227981 -105309278 + L1_Mus1 LINE L1 6208 6566 -1 3 945 236 253 11 0 chr5 47229231 47229322 -105307937 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 945 659 317 68 30 chr5 47229329 47229522 -105307737 - B4A SINE B4 -1 291 90 3 945 477 90 0 0 chr5 47229522 47229589 -105307670 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 3 945 659 317 68 30 chr5 47229589 47229632 -105307627 - B4A SINE B4 -203 89 46 3 945 309 337 55 87 chr5 47229925 47230143 -105307116 - RMER2 LTR ERV1 -27 540 330 3 945 356 111 16 0 chr5 47230370 47230433 -105306826 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 945 317 291 183 17 chr5 47230433 47230608 -105306651 - HAL1-3A_ME LINE L1 -420 2438 2235 3 945 185 402 52 29 chr5 47231098 47231308 -105305951 + L2a LINE L2 2930 3144 -282 3 945 417 293 78 55 chr5 47231419 47231690 -105305569 - B4A SINE B4 -12 280 4 3 945 216 0 0 0 chr5 47232226 47232250 -105305009 + (T)n Simple_repeat Simple_repeat 1 24 0 3 945 21 0 0 0 chr5 47232286 47232307 -105304952 + AT_rich Low_complexity Low_complexity 1 21 0 3 945 3590 72 24 0 chr5 47232467 47232927 -105304332 - MT2C_Mm LTR ERVL 0 475 5 3 945 281 325 12 48 chr5 47234384 47234468 -105302791 + ID4 SINE ID 1 81 -2 3 945 357 24 0 0 chr5 47234949 47234991 -105302268 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 945 6971 68 8 3 chr5 47235418 47236323 -105300936 + L1Md_F2 LINE L1 5664 6572 -10 3 945 980 308 142 0 chr5 47237345 47237676 -105299583 + MTE2b LTR MaLR 2 379 0 3 945 380 272 122 10 chr5 47237941 47238187 -105299072 + L1MA6 LINE L1 6012 6286 -17 3 945 251 258 0 15 chr5 47238212 47238279 -105298980 + L1P5 LINE L1 5848 5913 -243 3 945 273 57 0 0 chr5 47238317 47238352 -105298907 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 945 237 279 73 0 chr5 47239779 47239847 -105297412 - B4A SINE B4 -217 75 3 3 945 248 356 16 71 chr5 47239857 47239984 -105297275 - PB1 SINE Alu -7 120 1 3 945 1133 294 63 25 chr5 47240206 47240570 -105296689 - MTE2b LTR MaLR -2 368 1 3 945 355 333 43 65 chr5 47241463 47241754 -105295505 - MTE2a LTR MaLR -20 399 140 3 945 2068 87 18 61 chr5 47241752 47242081 -105295178 - ORR1A2 LTR MaLR -8 319 5 3 945 433 278 104 55 chr5 47242697 47242899 -105294360 + B3 SINE B2 4 215 -1 3 945 484 344 127 31 chr5 47243751 47244075 -105293184 - MLT1A0 LTR MaLR -10 355 1 3 945 1994 153 3 3 chr5 47244879 47245200 -105292059 - RMER6A LTR ERVK -434 322 2 3 945 561 132 0 0 chr5 47245201 47245292 -105291967 - RMER6-int LTR ERVK -2 3175 3085 3 945 224 311 43 32 chr5 47246823 47246916 -105290343 + MIR SINE MIR 26 119 -143 3 945 200 268 18 18 chr5 47247378 47247435 -105289824 - L4 LINE RTE -490 1539 1483 3 945 189 0 0 0 chr5 47247983 47248004 -105289255 + (T)n Simple_repeat Simple_repeat 1 21 0 3 945 21 0 0 0 chr5 47248064 47248085 -105289174 + AT_rich Low_complexity Low_complexity 1 21 0 3 945 623 310 86 92 chr5 47248489 47248976 -105288283 + MLT1D LTR MaLR 1 484 -21 3 945 332 386 20 25 chr5 47248997 47249199 -105288060 - MER58A DNA MER1_type -5 219 19 3 945 333 0 0 0 chr5 47249400 47249437 -105287822 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 945 585 0 0 0 chr5 47249437 47249501 -105287758 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 945 2324 166 5 34 chr5 47250388 47250799 -105286460 - Lx4A LINE L1 0 7058 6660 3 945 821 111 0 0 chr5 47250799 47250916 -105286343 + Lx4A LINE L1 5576 5692 -185 3 945 902 155 18 0 chr5 47250919 47251087 -105286172 + Lx4A LINE L1 5875 6045 -1013 3 945 347 310 81 40 chr5 47251172 47251468 -105285791 - L1_Rod LINE L1 -3939 1908 1601 3 945 749 316 76 42 chr5 47251464 47251605 -105285654 + Lx8 LINE L1 7054 7187 -286 3 945 1827 200 98 42 chr5 47251605 47252158 -105285101 - RLTR31A_Mm LTR ERVK 0 584 1 3 945 749 316 76 42 chr5 47252158 47252328 -105284931 + Lx8 LINE L1 7188 7374 -99 3 945 1641 180 26 134 chr5 47252328 47252752 -105284507 + ORR1C1 LTR MaLR 1 378 0 3 945 749 316 76 42 chr5 47252752 47252845 -105284414 + Lx8 LINE L1 7375 7473 0 3 945 465 138 0 0 chr5 47252862 47252942 -105284317 + (TA)n Simple_repeat Simple_repeat 2 81 0 3 945 287 150 17 0 chr5 47252941 47253001 -105284258 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 945 805 306 10 0 chr5 47254238 47254431 -105282828 + B3A SINE B2 4 198 0 4 945 355 235 22 56 chr5 47254682 47254772 -105282487 - RLTR20A2 LTR ERVK 0 578 492 4 945 354 23 0 0 chr5 47254772 47254815 -105282444 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 945 647 236 200 6 chr5 47255239 47255414 -105281845 + B3 SINE B2 2 210 -6 4 945 211 336 121 0 chr5 47255563 47255679 -105281580 - MER5A DNA MER1_type -4 185 56 4 945 321 89 0 0 chr5 47256495 47256540 -105280719 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 945 459 0 0 0 chr5 47256540 47256591 -105280668 + (TATAG)n Simple_repeat Simple_repeat 5 55 0 4 945 763 232 110 76 chr5 47256720 47256767 -105280492 - MT2B LTR ERVL 0 601 549 4 945 555 39 28 38 chr5 47256767 47256873 -105280386 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 4 945 763 256 148 73 chr5 47256873 47257289 -105279970 - MT2B LTR ERVL -53 548 2 4 945 378 0 0 0 chr5 47257306 47257348 -105279911 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 945 254 147 0 14 chr5 47258499 47258568 -105278691 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 945 837 30 0 0 chr5 47259567 47259667 -105277592 + (TTTC)n Simple_repeat Simple_repeat 1 100 0 4 945 1003 111 0 0 chr5 47259667 47259802 -105277457 - B1_Mus1 SINE Alu -12 136 2 4 945 234 315 53 32 chr5 47259809 47259904 -105277355 - MLT1A LTR MaLR -276 98 2 4 945 589 338 31 44 chr5 47260178 47260497 -105276762 - Lx8 LINE L1 -157 7316 7002 4 945 825 114 28 17 chr5 47260556 47260734 -105276525 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 945 262 308 0 0 chr5 47260773 47260851 -105276408 - Lx8 LINE L1 -520 6953 6876 4 945 317 325 115 16 chr5 47260940 47261131 -105276128 - B3 SINE B2 -6 210 1 4 945 231 125 0 0 chr5 47261702 47261742 -105275517 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 945 232 297 126 37 chr5 47261879 47262148 -105275111 - L1MD3 LINE L1 -130 7655 7363 4 945 286 287 71 36 chr5 47262167 47262279 -105274980 - MLT1B LTR MaLR -19 371 256 4 945 341 376 35 35 chr5 47262759 47262930 -105274329 - L1MD3 LINE L1 -1091 6904 6734 4 945 945 217 22 39 chr5 47263250 47263480 -105273779 - URR1A DNA MER1_type 0 226 1 4 945 288 329 66 12 chr5 47264059 47264225 -105273034 - Lx8 LINE L1 -84 7389 7215 4 945 3135 71 0 2 chr5 47264325 47264722 -105272537 + MTA_Mm LTR MaLR 1 396 0 4 945 638 209 181 12 chr5 47264872 47265032 -105272227 + B3 SINE B2 27 213 -3 4 945 562 121 57 13 chr5 47265397 47265556 -105271703 + GA-rich Low_complexity Low_complexity 1 166 0 4 945 2514 212 18 13 chr5 47265711 47266284 -105270975 + Lx5 LINE L1 6443 7058 0 4 945 708 332 77 28 chr5 47266437 47266790 -105270469 + MLT2B4 LTR ERVL 5 374 -182 4 945 504 77 0 0 chr5 47266853 47266931 -105270328 + (TC)n Simple_repeat Simple_repeat 2 79 0 4 945 208 88 59 0 chr5 47267736 47267770 -105269489 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 4 945 1816 87 4 8 chr5 47267970 47268224 -105269035 + MT2B2 LTR ERVL 1 253 -348 4 945 16601 16 0 0 chr5 47268227 47270868 -105266391 - L1Md_T LINE L1 0 6582 3943 4 945 2209 130 6 6 chr5 47270868 47271217 -105266042 + MT2B2 LTR ERVL 236 584 0 4 945 1286 192 0 38 chr5 47271217 47271509 -105265750 + ORR1A3-int LTR MaLR 1 281 -1682 4 945 1778 171 0 0 chr5 47271470 47271756 -105265503 - MT2B LTR ERVL -315 286 1 4 945 279 254 63 84 chr5 47271756 47271806 -105265453 - ORR1A3-int LTR MaLR -1350 613 567 4 945 2102 240 81 46 chr5 47273467 47274057 -105263202 - RMER19C LTR ERVK 0 611 1 4 945 264 120 0 0 chr5 47274585 47274635 -105262624 + (CACCAT)n Simple_repeat Simple_repeat 1 50 0 4 945 506 271 89 12 chr5 47274980 47275148 -105262111 + B3A SINE B2 2 182 -16 4 945 576 186 33 46 chr5 47276582 47276734 -105260525 + Lx7 LINE L1 7532 7681 -15 4 945 258 176 78 0 chr5 47276777 47276828 -105260431 + B1F SINE Alu 51 105 -44 4 945 285 29 0 0 chr5 47277452 47277486 -105259773 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 945 230 143 0 20 chr5 47277536 47277586 -105259673 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 945 882 70 148 0 chr5 47277786 47277914 -105259345 + B1_Mus1 SINE Alu 2 148 0 4 945 630 191 0 0 chr5 47277916 47278047 -105259212 + A-rich Low_complexity Low_complexity 1 131 0 4 945 1084 317 102 25 chr5 47278896 47279407 -105257852 + Lx8 LINE L1 6917 7466 -7 4 945 267 103 0 0 chr5 47279770 47279809 -105257450 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 945 377 345 118 13 chr5 47279818 47280047 -105257212 + L1MB8 LINE L1 4654 4906 -1240 4 945 330 269 140 0 chr5 47280167 47280353 -105256906 + L1MB8 LINE L1 5258 5469 -709 4 945 337 360 71 49 chr5 47280452 47280718 -105256541 + L1MB8 LINE L1 5629 5900 -278 4 945 271 328 39 15 chr5 47281037 47281167 -105256092 + RMER15 LTR ERVL 439 571 -4 4 945 269 301 124 15 chr5 47282083 47282229 -105255030 - L1MA4A LINE L1 -381 5922 5772 4 945 4759 105 38 0 chr5 47282229 47282941 -105254318 - Lx LINE L1 0 6654 5916 4 945 269 301 124 15 chr5 47282941 47282996 -105254263 - L1MA4A LINE L1 -532 5771 5700 4 945 27 62 0 0 chr5 47285071 47285119 -105252140 + AT_rich Low_complexity Low_complexity 1 48 0 4 945 228 289 39 0 chr5 47285583 47285687 -105251572 + L1M3 LINE L1 4624 4731 -1409 4 945 225 203 17 17 chr5 47285761 47285821 -105251438 + L1M3 LINE L1 5214 5273 -867 4 945 1180 331 48 25 chr5 47285890 47286452 -105250807 - L1MC1 LINE L1 -15 6318 5734 4 945 1061 110 0 0 chr5 47286452 47286597 -105250662 - B1_Mus2 SINE Alu 0 147 3 4 945 1180 331 48 25 chr5 47286597 47286664 -105250595 - L1MC1 LINE L1 -600 5733 5675 4 945 361 291 173 0 chr5 47286817 47286944 -105250315 + B1F SINE Alu 1 149 0 4 945 25 0 0 0 chr5 47287574 47287599 -105249660 + AT_rich Low_complexity Low_complexity 1 25 0 4 945 777 97 0 0 chr5 47288030 47288164 -105249095 + (TC)n Simple_repeat Simple_repeat 2 135 0 4 945 276 53 0 0 chr5 47288323 47288361 -105248898 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 945 202 389 47 8 chr5 47288694 47288821 -105248438 + L2c LINE L2 3240 3371 -16 4 945 359 291 45 39 chr5 47289388 47289542 -105247717 - MER97c DNA MER1_type? -903 187 33 4 945 294 29 0 0 chr5 47289841 47289876 -105247383 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 945 22 0 0 0 chr5 47290310 47290332 -105246927 + AT_rich Low_complexity Low_complexity 1 22 0 4 945 225 356 0 0 chr5 47290488 47290575 -105246684 + (CA)n Simple_repeat Simple_repeat 2 88 0 4 945 414 159 0 0 chr5 47290576 47290664 -105246595 + (TA)n Simple_repeat Simple_repeat 1 88 0 4 945 222 37 0 0 chr5 47290726 47290753 -105246506 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 945 207 0 0 0 chr5 47290753 47290775 -105246484 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 945 246 389 75 30 chr5 47291278 47291477 -105245782 - MLT1D LTR MaLR -264 241 34 4 945 236 242 16 0 chr5 47292104 47292166 -105245093 + G-rich Low_complexity Low_complexity 6 68 0 4 945 494 113 10 0 chr5 47292171 47292268 -105244991 + (TC)n Simple_repeat Simple_repeat 1 98 0 4 945 360 0 0 0 chr5 47292278 47292318 -105244941 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 945 686 239 44 19 chr5 47293322 47293480 -105243779 + B3A SINE B2 2 163 -35 4 945 475 283 43 88 chr5 47293617 47294039 -105243220 + Lx9 LINE L1 7238 7640 -4 4 945 26 82 0 0 chr5 47294174 47294235 -105243024 + AT_rich Low_complexity Low_complexity 1 61 0 4 945 22 35 0 0 chr5 47294306 47294335 -105242924 + AT_rich Low_complexity Low_complexity 1 29 0 4 945 310 333 100 13 chr5 47295019 47295329 -105241930 - L1MA6 LINE L1 -364 5936 5600 4 945 229 344 58 58 chr5 47295677 47295850 -105241409 - MER21B LTR ERV1 -190 673 501 4 945 26 0 0 0 chr5 47296020 47296046 -105241213 + AT_rich Low_complexity Low_complexity 1 26 0 4 945 39 0 0 0 chr5 47296788 47296827 -105240432 + AT_rich Low_complexity Low_complexity 1 39 0 4 945 294 283 100 5 chr5 47297147 47297246 -105240013 + PB1D9 SINE Alu 13 115 -34 4 945 447 68 0 0 chr5 47297253 47297312 -105239947 + (GGA)n Simple_repeat Simple_repeat 2 60 0 4 945 642 179 8 0 chr5 47299349 47299472 -105237787 + Lx4B LINE L1 5874 5997 -1061 4 945 2571 218 102 71 chr5 47299494 47300359 -105236900 + RLTR13D6 LTR ERVK 6 1021 -12 4 945 3368 233 60 13 chr5 47300361 47301298 -105235961 + Lx4B LINE L1 5993 6978 -22 4 945 606 28 0 0 chr5 47301341 47301413 -105235846 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 945 550 190 27 9 chr5 47302661 47302777 -105234482 + B1_Mur2 SINE Alu 24 139 -10 4 945 398 222 0 8 chr5 47302816 47302943 -105234316 + GA-rich Low_complexity Low_complexity 1 126 0 4 945 26 74 0 0 chr5 47303299 47303353 -105233906 + AT_rich Low_complexity Low_complexity 1 54 0 4 945 1425 190 76 60 chr5 47303509 47303879 -105233380 - ORR1C1 LTR MaLR 0 378 3 4 945 523 375 29 7 chr5 47306516 47306790 -105230469 + RMER15-int LTR ERVL 206 485 -4514 4 945 345 303 21 47 chr5 47306790 47306955 -105230304 + L1_Mur1 LINE L1 5441 5630 -670 4 945 375 212 0 0 chr5 47307185 47307270 -105229989 + (TATATG)n Simple_repeat Simple_repeat 5 89 0 4 945 1035 110 7 0 chr5 47307270 47307415 -105229844 - B1_Mus1 SINE Alu -2 146 1 4 945 557 304 79 10 chr5 47307912 47308115 -105229144 + ID_B1 SINE B4 1 217 -7 4 945 397 230 36 43 chr5 47309655 47309803 -105227456 + B3 SINE B2 52 195 0 4 945 879 209 21 125 chr5 47309803 47310131 -105227128 - Lx7 LINE L1 -195 7501 7208 4 945 299 303 28 11 chr5 47310156 47310262 -105226997 - B1_Mur4 SINE Alu -1 149 38 4 945 384 250 62 44 chr5 47310265 47310378 -105226881 - B1_Mus1 SINE Alu -31 117 3 4 945 983 225 48 17 chr5 47310379 47310610 -105226649 - Lx7 LINE L1 -473 7223 6986 4 945 191 181 98 98 chr5 47310802 47310894 -105226365 + L3 LINE CR1 1089 1180 -3309 4 945 237 119 0 0 chr5 47311202 47311244 -105226015 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 945 438 333 0 19 chr5 47311278 47311382 -105225877 - RSINE1 SINE B4 -61 104 3 4 945 531 202 66 16 chr5 47312284 47312405 -105224854 - B1_Mur3 SINE Alu -17 132 6 4 945 1190 247 158 6 chr5 47312873 47312977 -105224282 + MTD LTR MaLR 12 118 -301 4 945 369 0 0 0 chr5 47312977 47313018 -105224241 + (ATTG)n Simple_repeat Simple_repeat 3 43 0 5 945 1190 247 158 6 chr5 47313018 47313267 -105223992 + MTD LTR MaLR 119 418 -1 4 945 237 189 83 42 chr5 47314165 47314237 -105223022 - MLT1A1 LTR MaLR 0 408 334 5 945 191 0 103 0 chr5 47314248 47314277 -105222982 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 5 945 248 316 121 35 chr5 47314651 47314825 -105222434 - RLTR21 LTR ERVK -321 1251 1063 5 945 852 344 67 28 chr5 47315125 47315169 -105222090 - LTR33B LTR ERVL 0 503 460 5 945 1047 123 0 0 chr5 47315169 47315332 -105221927 + (TTC)n Simple_repeat Simple_repeat 3 165 0 5 945 852 344 67 28 chr5 47315332 47315748 -105221511 - LTR33B LTR ERVL -44 459 27 5 945 351 375 132 4 chr5 47316631 47316912 -105220347 - MER58B DNA MER1_type -16 325 9 5 946 237 108 0 0 chr5 47317093 47317130 -105220129 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 946 55 56 0 0 chr5 47317191 47317281 -105219978 + AT_rich Low_complexity Low_complexity 1 90 0 5 946 1126 81 0 0 chr5 47317376 47317524 -105219735 - B1_Mus1 SINE Alu 0 148 1 5 946 412 309 8 0 chr5 47317609 47317732 -105219527 + MLT1J2 LTR MaLR 51 174 -274 5 946 262 385 44 0 chr5 47318099 47318281 -105218978 + L1MEc LINE L1 159 348 -6052 5 946 213 200 0 0 chr5 47318289 47318324 -105218935 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 946 618 126 0 0 chr5 47318331 47318434 -105218825 + (GA)n Simple_repeat Simple_repeat 1 103 0 5 946 265 294 105 67 chr5 47318548 47318862 -105218397 + L1MEc LINE L1 519 844 -5556 5 946 21 36 0 0 chr5 47320064 47320092 -105217167 + AT_rich Low_complexity Low_complexity 1 28 0 5 946 1016 156 0 6 chr5 47320215 47320383 -105216876 + URR1B DNA MER1_type 53 219 -6 5 946 6558 236 28 19 chr5 47320383 47321921 -105215338 + Lx6 LINE L1 5730 7544 -152 5 946 248 240 0 0 chr5 47321931 47321981 -105215278 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 5 946 540 0 0 0 chr5 47322940 47323000 -105214259 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 946 405 0 0 0 chr5 47323000 47323044 -105214215 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 946 381 149 0 0 chr5 47323142 47323209 -105214050 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 946 880 62 20 33 chr5 47323253 47323404 -105213855 + (GAAA)n Simple_repeat Simple_repeat 3 151 0 5 946 207 0 0 0 chr5 47325192 47325215 -105212044 + (A)n Simple_repeat Simple_repeat 1 23 0 5 946 489 269 51 29 chr5 47325783 47325921 -105211338 + RSINE1 SINE B4 3 143 -22 5 946 387 0 0 0 chr5 47325929 47325972 -105211287 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 946 22 0 0 0 chr5 47326482 47326504 -105210755 + AT_rich Low_complexity Low_complexity 1 22 0 5 946 1963 187 16 10 chr5 47326504 47326945 -105210314 - L1_Mur2 LINE L1 -3418 2468 2025 5 946 1198 270 106 14 chr5 47328124 47328492 -105208767 + MTD LTR MaLR 18 419 0 5 946 424 307 47 8 chr5 47328835 47328963 -105208296 + LTR55 LTR ERV 1 133 -415 5 946 238 270 63 126 chr5 47328969 47329096 -105208163 - RLTR42 LTR ERVK -21 218 100 5 946 207 0 0 0 chr5 47329317 47329340 -105207919 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 5 946 306 125 0 0 chr5 47329879 47329927 -105207332 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 946 399 41 0 0 chr5 47330928 47330977 -105206282 + (TAA)n Simple_repeat Simple_repeat 3 51 0 5 946 563 265 67 83 chr5 47331163 47331538 -105205721 + RMER10A LTR ERVL 59 427 -15 5 946 1973 129 46 49 chr5 47331759 47332127 -105205132 + IAPLTR1_Mm LTR ERVK 1 367 0 5 946 56845 16 7 10 chr5 47332127 47338621 -105198638 + IAPEz-int LTR ERVK 8 6481 0 5 946 1973 129 46 49 chr5 47338621 47338989 -105198270 + IAPLTR1_Mm LTR ERVK 1 367 0 5 946 2856 148 110 56 chr5 47339731 47340340 -105196919 - RLTR26 LTR ERVK 0 642 1 5 946 854 215 71 9 chr5 47340509 47340720 -105196539 + URR1B DNA MER1_type 1 224 -1 5 946 1145 88 0 0 chr5 47342414 47342561 -105194698 + B1_Mus2 SINE Alu 1 147 0 5 946 258 32 0 0 chr5 47342563 47342594 -105194665 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 946 525 154 0 0 chr5 47342635 47342726 -105194533 + (TA)n Simple_repeat Simple_repeat 1 91 0 5 946 195 139 0 0 chr5 47343765 47343801 -105193458 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 946 238 167 0 0 chr5 47344654 47344690 -105192569 + URR1B DNA MER1_type 56 91 -134 5 946 553 14 42 0 chr5 47344690 47344761 -105192498 - L1Md_F3 LINE L1 -495 6089 6016 5 946 873 129 7 0 chr5 47344787 47344934 -105192325 + URR1B DNA MER1_type 78 225 0 5 946 626 241 126 35 chr5 47345106 47345146 -105192113 - B3 SINE B2 0 216 178 5 946 519 17 0 0 chr5 47345146 47345206 -105192053 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 946 626 241 126 35 chr5 47345206 47345363 -105191896 - B3 SINE B2 -39 177 1 5 946 209 258 48 0 chr5 47345367 47345429 -105191830 - MIRb SINE MIR -100 168 104 5 946 1100 201 220 48 chr5 47345554 47345867 -105191392 + ORR1B2 LTR MaLR 1 367 0 5 946 240 59 0 0 chr5 47345982 47346016 -105191243 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 946 1121 251 194 36 chr5 47346212 47346650 -105190609 - RMER20A LTR ERVK 0 516 10 5 946 257 299 115 0 chr5 47346667 47346754 -105190505 + Lx6 LINE L1 6177 6273 -1187 5 946 231 326 39 59 chr5 47346754 47346907 -105190352 - RMER4A LTR ERVK -409 176 27 5 946 468 35 0 0 chr5 47347179 47347237 -105190022 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 946 21 36 0 0 chr5 47348566 47348594 -105188665 + AT_rich Low_complexity Low_complexity 1 28 0 5 946 5365 202 114 38 chr5 47348626 47350213 -105187046 - L1_Mur1 LINE L1 -1944 3942 2236 5 946 4545 71 8 2 chr5 47350351 47350942 -105186317 + L1_Mus1 LINE L1 5972 6566 -1 5 946 4165 218 57 8 chr5 47351532 47352667 -105184592 + ORR1B2-int LTR MaLR 308 1509 0 5 946 1637 188 42 69 chr5 47352674 47353035 -105184224 + ORR1B2 LTR MaLR 9 359 -8 5 946 1223 132 106 4 chr5 47353091 47353327 -105183932 - L1_Mus3 LINE L1 0 6638 6379 5 946 333 0 0 0 chr5 47353463 47353500 -105183759 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 946 181 368 51 26 chr5 47353578 47353695 -105183564 + MIR SINE MIR 16 135 -73 5 946 596 215 19 16 chr5 47354173 47354308 -105182951 - B1_Mur1 SINE Alu -1 148 11 5 946 489 17 0 0 chr5 47355065 47355123 -105182136 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 946 230 297 0 0 chr5 47355138 47355202 -105182057 - Lx9 LINE L1 -219 7425 7362 5 946 267 340 12 42 chr5 47355343 47355509 -105181750 + Lx9 LINE L1 7102 7262 -382 5 946 331 340 10 0 chr5 47355676 47355776 -105181483 - MLT1B LTR MaLR -8 459 359 5 946 290 323 53 120 chr5 47355785 47356084 -105181175 + B4A SINE B4 2 280 -12 5 946 303 113 0 0 chr5 47356130 47356183 -105181076 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 946 355 305 131 60 chr5 47356233 47356432 -105180827 - MLT1B LTR MaLR -108 282 70 5 946 2566 191 16 19 chr5 47356502 47357015 -105180244 - RLTR28 LTR ERVL -11 513 3 5 946 200 294 0 0 chr5 47357082 47357133 -105180126 - L2c LINE L2 -8 3379 3329 5 946 707 346 57 15 chr5 47357202 47357795 -105179464 + Lx8 LINE L1 6070 6815 -829 5 946 1166 307 92 34 chr5 47357807 47358391 -105178868 + Lx8 LINE L1 6827 7444 -29 5 946 258 32 0 0 chr5 47360625 47360656 -105176603 + (T)n Simple_repeat Simple_repeat 1 31 0 5 946 414 315 0 0 chr5 47361381 47361492 -105175767 + ID_B1 SINE B4 114 224 0 5 946 750 98 0 0 chr5 47361499 47361621 -105175638 + (CAAAC)n Simple_repeat Simple_repeat 3 124 0 5 946 31 44 0 0 chr5 47362815 47362860 -105174399 + AT_rich Low_complexity Low_complexity 1 45 0 5 946 433 162 18 0 chr5 47363102 47363213 -105174046 + (TA)n Simple_repeat Simple_repeat 1 113 0 5 946 755 183 6 0 chr5 47363225 47363400 -105173859 + (TA)n Simple_repeat Simple_repeat 2 177 0 5 946 375 23 0 0 chr5 47363401 47363445 -105173814 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 946 477 206 0 0 chr5 47363578 47363680 -105173579 + (TATG)n Simple_repeat Simple_repeat 3 104 0 5 946 4568 235 41 7 chr5 47363680 47364757 -105172502 + Lx2B LINE L1 5878 6991 -9 5 946 472 260 7 84 chr5 47366126 47366269 -105170990 - B1F2 SINE Alu -17 132 1 5 946 23 0 0 0 chr5 47366866 47366889 -105170370 + AT_rich Low_complexity Low_complexity 1 23 0 5 946 25 0 0 0 chr5 47367179 47367204 -105170055 + AT_rich Low_complexity Low_complexity 1 25 0 5 946 239 316 67 25 chr5 47368212 47368332 -105168927 - B2_Mm2 SINE B2 -70 125 1 5 946 189 0 0 0 chr5 47368847 47368868 -105168391 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 5 946 1157 207 205 22 chr5 47369104 47369475 -105167784 + RMER10A LTR ERVL 1 439 -3 5 946 2105 260 87 24 chr5 47369867 47370502 -105166757 - RCHARR1 DNA MER1_type -180 794 120 5 946 712 274 6 12 chr5 47370519 47370685 -105166574 - B3 SINE B2 -50 166 2 5 946 521 309 130 22 chr5 47370824 47371277 -105165982 - L1MB1 LINE L1 -134 6034 5533 5 946 267 54 0 0 chr5 47371855 47371892 -105165367 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 5 946 2186 88 12 6 chr5 47371921 47372241 -105165018 + L1_Mus3 LINE L1 6311 6632 -6 5 946 495 167 0 0 chr5 47372398 47372488 -105164771 + (CA)n Simple_repeat Simple_repeat 2 91 0 5 946 216 167 0 0 chr5 47373715 47373763 -105163496 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 946 31 76 0 0 chr5 47374055 47374121 -105163138 + AT_rich Low_complexity Low_complexity 1 66 0 5 946 486 0 0 0 chr5 47374197 47374251 -105163008 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 946 275 303 31 52 chr5 47374393 47374592 -105162667 - RLTR11A2 LTR ERVK -243 284 96 5 946 331 242 193 15 chr5 47374878 47375075 -105162184 - L1M5 LINE L1 -328 5796 5565 5 946 29 0 0 0 chr5 47375243 47375272 -105161987 + AT_rich Low_complexity Low_complexity 1 29 0 5 946 1029 192 59 5 chr5 47375278 47375498 -105161761 - Lx LINE L1 -5 6649 6418 5 946 255 64 43 0 chr5 47375991 47376038 -105161221 + L1_Mus1 LINE L1 6518 6566 -1 5 946 218 184 47 37 chr5 47376358 47376465 -105160794 + (TA)n Simple_repeat Simple_repeat 2 109 0 5 946 861 351 72 43 chr5 47376609 47377092 -105160167 + MLT2B3 LTR ERVL 12 508 -46 5 946 31 44 0 0 chr5 47377615 47377660 -105159599 + AT_rich Low_complexity Low_complexity 1 45 0 5 946 934 289 116 40 chr5 47377779 47378157 -105159102 - MTB_Mm LTR MaLR 0 407 1 6 946 267 31 0 0 chr5 47378666 47378698 -105158561 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 6 946 216 0 0 0 chr5 47379111 47379135 -105158124 + (T)n Simple_repeat Simple_repeat 1 24 0 6 946 342 0 0 0 chr5 47379601 47379639 -105157620 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 946 476 322 49 11 chr5 47379904 47380060 -105157199 - ID_B1 SINE B4 -73 219 56 6 946 189 143 0 0 chr5 47380060 47380088 -105157171 + MIRm SINE MIR 222 249 -27 6 946 2629 77 6 6 chr5 47381397 47381763 -105155496 - L1_Mus3 LINE L1 -1 6637 6272 6 946 21 36 0 0 chr5 47382236 47382264 -105154995 + AT_rich Low_complexity Low_complexity 1 28 0 6 946 22 35 0 0 chr5 47382706 47382735 -105154524 + AT_rich Low_complexity Low_complexity 1 29 0 6 946 207 0 0 0 chr5 47384234 47384257 -105153002 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 946 471 18 0 0 chr5 47384380 47384436 -105152823 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 946 22 56 0 0 chr5 47384442 47384478 -105152781 + AT_rich Low_complexity Low_complexity 1 36 0 6 946 254 352 28 0 chr5 47384518 47384626 -105152633 + MARNA DNA Mariner 244 354 -232 6 946 29 47 0 0 chr5 47385898 47385941 -105151318 + AT_rich Low_complexity Low_complexity 1 43 0 6 946 448 294 106 11 chr5 47385999 47386178 -105151081 + B3A SINE B2 3 198 0 6 946 1557 41 0 5 chr5 47386516 47386712 -105150547 + L1Md_F3 LINE L1 6376 6570 -14 6 946 345 234 14 7 chr5 47388052 47388190 -105149069 + GA-rich Low_complexity Low_complexity 2 140 0 6 946 300 231 62 44 chr5 47388686 47388786 -105148473 + MLT1A1 LTR MaLR 250 383 -25 6 946 269 290 132 58 chr5 47389377 47389679 -105147580 - Charlie1 DNA MER1_type -21 2760 2430 6 946 3338 40 0 2 chr5 47389828 47390225 -105147034 - MTA_Mm LTR MaLR 0 396 1 6 946 7766 75 18 6 chr5 47390225 47391310 -105145949 - MTA_Mm-int LTR MaLR 0 1098 1 6 946 230 0 33 0 chr5 47391798 47391828 -105145431 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 6 946 312 51 16 33 chr5 47391837 47391898 -105145361 + (TTTTTG)n Simple_repeat Simple_repeat 3 62 0 6 946 258 56 0 0 chr5 47393085 47393121 -105144138 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 946 980 139 0 0 chr5 47393121 47393265 -105143994 - B1_Mus2 SINE Alu -3 144 1 6 946 183 329 0 52 chr5 47394030 47394107 -105143152 + L2a LINE L2 3035 3107 -319 6 946 1457 194 61 25 chr5 47395164 47395590 -105141669 - RMER17C LTR ERVK -517 441 19 6 946 21 36 0 0 chr5 47397349 47397377 -105139882 + AT_rich Low_complexity Low_complexity 1 28 0 6 946 252 333 17 69 chr5 47397693 47397809 -105139450 + MIRb SINE MIR 131 240 -28 6 946 614 342 83 22 chr5 47398310 47398606 -105138653 + B4A SINE B4 4 292 0 6 946 235 319 11 32 chr5 47399101 47399195 -105138064 - Charlie24 DNA MER1_type -17 2433 2342 6 946 369 0 0 0 chr5 47400283 47400324 -105136935 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 946 5179 68 36 0 chr5 47400445 47401139 -105136120 - L1_Mus3 LINE L1 0 6638 5920 6 946 5275 139 9 12 chr5 47401139 47402017 -105135242 + L1_Mm LINE L1 5009 5883 0 6 946 381 318 130 21 chr5 47402510 47402748 -105134511 + Lx8 LINE L1 7200 7463 -10 6 946 301 257 18 45 chr5 47402869 47402979 -105134280 + Lx8 LINE L1 7366 7472 -1 6 946 25 31 0 0 chr5 47403164 47403196 -105134063 + AT_rich Low_complexity Low_complexity 1 32 0 6 946 268 344 11 0 chr5 47403292 47403385 -105133874 + B4A SINE B4 5 98 -194 6 946 5042 67 2 0 chr5 47403385 47404279 -105132980 - L1Md_F2 LINE L1 -466 6116 5220 6 946 2707 59 53 13 chr5 47404279 47404658 -105132601 + L1Md_F2 LINE L1 6177 6570 -12 6 946 436 337 28 52 chr5 47404658 47404871 -105132388 + B4A SINE B4 85 292 0 6 946 270 0 0 0 chr5 47407020 47407050 -105130209 + (TTA)n Simple_repeat Simple_repeat 3 32 0 6 946 21 0 0 0 chr5 47407081 47407102 -105130157 + AT_rich Low_complexity Low_complexity 1 21 0 6 946 24 0 0 0 chr5 47407117 47407141 -105130118 + AT_rich Low_complexity Low_complexity 1 24 0 6 946 25 0 0 0 chr5 47407723 47407748 -105129511 + AT_rich Low_complexity Low_complexity 1 25 0 6 946 3181 99 0 0 chr5 47407962 47408395 -105128864 - RLTR10C LTR ERVK -3 433 1 6 946 204 239 41 82 chr5 47408475 47408548 -105128711 - L2a LINE L2 0 3426 3357 6 946 209 348 11 22 chr5 47408599 47408690 -105128569 - L2b LINE L2 -288 3087 2998 6 946 6174 139 21 19 chr5 47409070 47410119 -105127140 + Lx2 LINE L1 5947 6997 0 6 946 10657 169 20 209 chr5 47410270 47411241 -105126018 - L1_Mur2 LINE L1 -718 5159 4160 6 946 694 271 170 22 chr5 47411241 47411492 -105125767 + RLTR9A LTR ERVK 1 297 -71 6 946 980 82 102 28 chr5 47411492 47411668 -105125591 - B2_Mm2 SINE B2 -5 190 2 6 946 694 271 170 22 chr5 47411668 47411733 -105125526 + RLTR9A LTR ERVK 298 363 -5 6 946 10657 169 20 209 chr5 47411733 47414249 -105123010 - L1_Mur2 LINE L1 -1718 4159 2074 6 946 7187 137 38 2 chr5 47415460 47417093 -105120166 + Lx3A LINE L1 47 1736 -4150 6 946 8325 120 28 7 chr5 47417097 47418479 -105118780 + Lx3A LINE L1 3188 4598 -1288 6 946 8345 106 36 11 chr5 47418474 47419776 -105117483 + Lx3A LINE L1 5642 6975 -6 6 946 375 320 16 39 chr5 47420420 47420547 -105116712 + RSINE1 SINE B4 1 124 -41 6 946 464 0 18 0 chr5 47420559 47420615 -105116644 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 946 450 0 0 0 chr5 47420670 47420720 -105116539 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 946 419 313 27 38 chr5 47421549 47421735 -105115524 + B3A SINE B2 4 187 -11 6 946 26 50 0 0 chr5 47421818 47421858 -105115401 + AT_rich Low_complexity Low_complexity 1 40 0 6 946 408 71 0 0 chr5 47422004 47422060 -105115199 + (TC)n Simple_repeat Simple_repeat 2 57 0 6 946 221 133 44 0 chr5 47422081 47422126 -105115133 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 6 946 447 19 0 0 chr5 47422131 47422183 -105115076 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 946 632 341 13 4 chr5 47422235 47422462 -105114797 - B4 SINE B4 -22 270 42 6 946 255 31 0 0 chr5 47423247 47423279 -105113980 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 946 395 366 102 15 chr5 47423755 47424080 -105113179 + L1ME2 LINE L1 5782 6134 -30 6 946 207 139 0 0 chr5 47425107 47425143 -105112116 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 946 266 298 80 30 chr5 47425174 47425375 -105111884 - L1MCa LINE L1 -4699 1809 1599 6 946 301 309 126 37 chr5 47425601 47425870 -105111389 - L1MCa LINE L1 -5130 1378 1086 6 946 435 288 64 70 chr5 47426103 47426275 -105110984 - MLT2D LTR ERVL -11 549 379 6 946 288 0 0 0 chr5 47427544 47427576 -105109683 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 946 414 0 0 0 chr5 47427846 47427892 -105109367 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 946 23 54 0 0 chr5 47428933 47428970 -105108289 + AT_rich Low_complexity Low_complexity 1 37 0 6 946 27 0 0 0 chr5 47429009 47429036 -105108223 + AT_rich Low_complexity Low_complexity 1 27 0 6 946 218 200 0 0 chr5 47429826 47429866 -105107393 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 6 946 551 51 13 0 chr5 47429994 47430073 -105107186 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 6 946 2658 177 73 10 chr5 47430770 47430858 -105106401 - RLTR20A1 LTR ERVK 0 551 464 6 946 261 0 0 0 chr5 47430858 47430887 -105106372 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 946 216 0 0 0 chr5 47430887 47430910 -105106349 + (GA)n Simple_repeat Simple_repeat 2 25 0 6 946 2658 177 73 10 chr5 47430910 47431338 -105105921 - RLTR20A1 LTR ERVK -88 463 2 6 946 303 250 12 0 chr5 47435359 47435439 -105101820 + L1MB2 LINE L1 5896 5976 -195 6 946 303 28 0 0 chr5 47435645 47435681 -105101578 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 946 273 368 47 0 chr5 47435849 47435955 -105101304 - Lx8 LINE L1 -283 7190 7080 6 946 257 324 63 7 chr5 47435967 47436004 -105101255 + L1MB2 LINE L1 5974 6015 -156 6 946 471 35 0 0 chr5 47436004 47436061 -105101198 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 946 257 324 63 7 chr5 47436061 47436166 -105101093 + L1MB2 LINE L1 6016 6123 -48 6 946 246 307 29 0 chr5 47436283 47436423 -105100836 + L1M3 LINE L1 5773 5916 -267 6 946 222 225 153 14 chr5 47436627 47436699 -105100560 + MIR SINE MIR 132 217 -51 6 946 371 283 47 53 chr5 47437747 47437937 -105099322 - MER53 DNA hAT -4 189 1 6 946 233 294 89 47 chr5 47438154 47438368 -105098891 - Charlie1 DNA MER1_type -17 2764 2542 6 946 243 0 0 0 chr5 47438523 47438550 -105098709 + (A)n Simple_repeat Simple_repeat 1 27 0 6 946 283 330 28 9 chr5 47438581 47438688 -105098571 + MLT1A LTR MaLR 221 329 -45 6 946 231 399 33 11 chr5 47438700 47438880 -105098379 + MER34A1 LTR ERV1 5 188 -399 6 946 477 0 0 0 chr5 47439092 47439145 -105098114 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 946 11199 191 42 21 chr5 47439596 47442721 -105094538 + L1_Mur2 LINE L1 396 3585 -2301 6 946 689 237 39 0 chr5 47442722 47442878 -105094381 + Lx2B LINE L1 6392 6553 -447 6 946 537 16 0 0 chr5 47443326 47443388 -105093871 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 6 946 491 161 17 35 chr5 47443644 47443818 -105093441 + (TCTCTG)n Simple_repeat Simple_repeat 4 174 0 6 946 297 332 151 22 chr5 47444259 47444570 -105092689 + L3b LINE CR1 121 471 -11 6 946 3943 64 0 21 chr5 47446674 47447203 -105090056 - L1Md_F2 LINE L1 -15 6567 6050 6 947 276 346 106 12 chr5 47448412 47448573 -105088686 + LFSINE_Vert SINE SINE 8 183 -276 6 947 282 253 0 0 chr5 47449052 47449131 -105088128 + GA-rich Low_complexity Low_complexity 1 79 0 6 947 435 309 78 48 chr5 47449142 47449373 -105087886 + MLT1C LTR MaLR 10 247 -220 6 947 258 336 88 14 chr5 47449639 47449787 -105087472 + MLT1C LTR MaLR 289 447 -20 6 947 189 74 0 0 chr5 47449949 47449976 -105087283 + (C)n Simple_repeat Simple_repeat 1 27 0 6 947 319 250 44 22 chr5 47450565 47450655 -105086604 - PB1D7 SINE Alu 0 120 29 6 947 527 0 16 0 chr5 47450766 47450829 -105086430 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 947 515 273 56 7 chr5 47450840 47450984 -105086275 - B3A SINE B2 -46 152 2 6 947 25 0 0 0 chr5 47451248 47451273 -105085986 + AT_rich Low_complexity Low_complexity 1 25 0 6 947 1667 260 73 5 chr5 47451878 47452318 -105084941 + Lx7 LINE L1 6801 7270 -426 7 947 975 268 64 8 chr5 47452318 47452585 -105084674 + RLTR11A2 LTR ERVK 1 282 -245 7 947 1113 187 62 0 chr5 47452869 47453094 -105084165 + RLTR11A2 LTR ERVK 289 527 0 7 947 187 60 100 0 chr5 47453203 47453253 -105084006 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 947 5054 122 74 0 chr5 47453550 47454344 -105082915 - Lx LINE L1 -1 6653 5801 7 947 447 118 15 0 chr5 47454375 47454443 -105082816 + B1_Mus2 SINE Alu 1 69 -78 7 947 3859 101 0 2 chr5 47454443 47454991 -105082268 + L1_Mus1 LINE L1 6018 6564 -3 7 947 27 29 0 0 chr5 47454994 47455028 -105082231 + AT_rich Low_complexity Low_complexity 1 34 0 7 947 410 0 20 0 chr5 47455028 47455078 -105082181 + (CAA)n Simple_repeat Simple_repeat 1 51 0 7 947 1175 48 7 0 chr5 47455081 47455226 -105082033 + B1_Mus2 SINE Alu 2 147 0 7 947 22 0 0 0 chr5 47456737 47456759 -105080500 + AT_rich Low_complexity Low_complexity 1 22 0 7 947 249 33 0 0 chr5 47456871 47456901 -105080358 + (TA)n Simple_repeat Simple_repeat 2 31 0 7 947 540 0 0 0 chr5 47456929 47456989 -105080270 + (TC)n Simple_repeat Simple_repeat 1 60 0 7 947 912 109 16 0 chr5 47457331 47457459 -105079800 + B2_Mm1t SINE B2 37 166 -27 7 947 897 110 0 0 chr5 47457460 47457596 -105079663 + (GAAA)n Simple_repeat Simple_repeat 3 138 0 7 947 210 242 0 0 chr5 47457935 47457997 -105079262 + T-rich Low_complexity Low_complexity 1 62 0 7 947 341 407 0 0 chr5 47458133 47458246 -105079013 + B1F SINE Alu 2 114 -35 7 947 506 394 59 80 chr5 47458455 47459133 -105078126 + MER21B LTR ERV1 1 664 -199 7 947 1618 178 18 0 chr5 47460059 47460340 -105076919 - ORR1A3 LTR MaLR -40 286 1 7 947 272 48 24 0 chr5 47460583 47460625 -105076634 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 947 441 81 0 0 chr5 47461755 47461817 -105075442 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 947 420 37 0 0 chr5 47461817 47461870 -105075389 + (GA)n Simple_repeat Simple_repeat 2 55 0 7 947 392 292 62 130 chr5 47461950 47462127 -105075132 - RSINE1 SINE B4 0 165 1 7 947 203 176 0 0 chr5 47462169 47462203 -105075056 + (TTG)n Simple_repeat Simple_repeat 2 35 0 7 947 960 35 0 0 chr5 47462398 47462514 -105074745 + (TC)n Simple_repeat Simple_repeat 1 116 0 7 947 1314 41 18 0 chr5 47462543 47462713 -105074546 + L1_Mus1 LINE L1 6395 6567 0 7 947 12964 171 15 23 chr5 47463345 47463832 -105073427 + L1_Mur1 LINE L1 2250 2738 -3148 7 947 905 62 133 0 chr5 47463832 47463960 -105073299 + B1_Mus2 SINE Alu 2 146 -1 7 947 189 0 0 0 chr5 47463963 47463984 -105073275 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 7 947 12964 171 15 23 chr5 47463984 47465843 -105071416 + L1_Mur1 LINE L1 2739 4577 -1309 7 947 3795 55 28 14 chr5 47465843 47466339 -105070920 + L1Md_F3 LINE L1 6080 6582 -2 7 947 12964 171 15 23 chr5 47466339 47466617 -105070642 + L1_Mur1 LINE L1 4578 4858 -1028 7 947 235 200 0 57 chr5 47466617 47466670 -105070589 + Lx9 LINE L1 7073 7122 -522 7 947 998 98 0 0 chr5 47466732 47466865 -105070394 + B1_Mm SINE Alu 2 134 -13 7 947 508 29 14 14 chr5 47466866 47466937 -105070322 + (GAAA)n Simple_repeat Simple_repeat 1 71 0 7 947 254 283 82 16 chr5 47466961 47467083 -105070176 + L1M4b LINE L1 1354 1483 -5851 7 947 1488 171 8 0 chr5 47467198 47467449 -105069810 - RMER6D LTR ERVK -467 253 1 7 947 246 81 0 0 chr5 47467485 47467522 -105069737 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 7 947 259 218 0 65 chr5 47467637 47467730 -105069529 + (CAGAGA)n Simple_repeat Simple_repeat 4 90 0 7 947 383 128 12 0 chr5 47468028 47468114 -105069145 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 7 947 24 32 0 0 chr5 47468149 47468180 -105069079 + AT_rich Low_complexity Low_complexity 1 31 0 7 947 327 274 68 45 chr5 47468374 47468550 -105068709 + L1M4b LINE L1 5815 5994 -1012 7 947 354 91 0 0 chr5 47468733 47468788 -105068471 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 947 249 194 150 20 chr5 47468805 47468905 -105068354 + Lx9 LINE L1 7531 7643 -1 7 947 23 33 0 0 chr5 47468980 47469010 -105068249 + AT_rich Low_complexity Low_complexity 1 30 0 7 947 490 333 31 6 chr5 47469075 47469238 -105068021 + B3A SINE B2 2 168 -30 7 947 480 18 0 0 chr5 47469245 47469302 -105067957 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 947 579 85 0 0 chr5 47469303 47469385 -105067874 + (GA)n Simple_repeat Simple_repeat 2 83 0 7 947 320 308 74 24 chr5 47469398 47469817 -105067442 + L1MB8 LINE L1 5550 5989 -189 7 947 1352 252 16 0 chr5 47470445 47470755 -105066504 + L1_Mur3 LINE L1 277 591 -7137 7 947 1419 200 78 72 chr5 47470760 47470997 -105066262 + L1_Mur3 LINE L1 3241 3479 -2401 7 947 368 97 0 16 chr5 47470997 47471060 -105066199 + (CAA)n Simple_repeat Simple_repeat 2 63 0 7 947 1419 200 78 72 chr5 47471060 47471269 -105065990 + L1_Mur3 LINE L1 3480 3690 -2190 7 947 30268 86 5 19 chr5 47471312 47473947 -105063312 + L1Md_F LINE L1 570 3197 -2686 7 947 271 167 49 16 chr5 47473947 47474008 -105063251 + B1_Mur3 SINE Alu 87 149 0 7 947 30268 86 5 19 chr5 47474008 47476400 -105060859 + L1Md_F LINE L1 3198 5585 -298 7 947 1712 226 38 16 chr5 47476384 47476401 -105060858 + L1_Mur3 LINE L1 3681 3698 -2182 7 947 8150 39 4 1 chr5 47476401 47477392 -105059867 + L1Md_F2 LINE L1 5587 6580 -2 7 947 1712 226 38 16 chr5 47477392 47477874 -105059385 + L1_Mur3 LINE L1 3699 4190 -1690 7 947 2956 136 71 37 chr5 47477884 47478446 -105058813 - RLTR1D LTR ERV1 -16 589 1 7 947 2847 83 8 0 chr5 47478446 47478843 -105058416 - BGLII LTR ERVK -1 420 21 7 947 22 0 0 0 chr5 47480796 47480818 -105056441 + AT_rich Low_complexity Low_complexity 1 22 0 7 947 228 130 0 0 chr5 47481103 47481149 -105056110 + (T)n Simple_repeat Simple_repeat 1 46 0 7 947 27 49 0 0 chr5 47481833 47481874 -105055385 + AT_rich Low_complexity Low_complexity 1 41 0 7 947 641 93 9 0 chr5 47484426 47484533 -105052726 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 7 947 945 214 76 0 chr5 47485671 47485881 -105051378 + URR1A DNA MER1_type 1 226 0 7 947 333 346 90 72 chr5 47486809 47487130 -105050129 + L2b LINE L2 3036 3362 -13 7 947 21 0 0 0 chr5 47487509 47487530 -105049729 + AT_rich Low_complexity Low_complexity 1 21 0 7 947 21 71 0 0 chr5 47488230 47488272 -105048987 + AT_rich Low_complexity Low_complexity 1 42 0 7 947 558 0 0 0 chr5 47488309 47488371 -105048888 + (TA)n Simple_repeat Simple_repeat 1 62 0 7 947 653 320 43 19 chr5 47488468 47488675 -105048584 - B3 SINE B2 0 216 5 7 947 270 281 0 0 chr5 47488863 47488927 -105048332 - RMER15 LTR ERVL -109 466 403 7 947 265 352 46 9 chr5 47488927 47489036 -105048223 - Lx8 LINE L1 -207 7266 7154 7 947 273 57 0 0 chr5 47489703 47489738 -105047521 + (TA)n Simple_repeat Simple_repeat 2 36 0 7 947 4852 122 19 23 chr5 47490239 47491752 -105045507 + L1Md_F2 LINE L1 310 1807 -4076 7 947 16620 83 4 16 chr5 47491748 47493842 -105043417 + L1Md_F2 LINE L1 3231 5294 -589 7 947 2776 58 3 3 chr5 47493842 47494203 -105043056 + L1Md_F2 LINE L1 6211 6571 -11 7 947 16620 83 4 16 chr5 47494203 47494494 -105042765 + L1Md_F2 LINE L1 5295 5586 -297 7 947 7100 78 12 7 chr5 47494495 47495485 -105041774 + L1Md_F2 LINE L1 5588 6582 0 7 947 194 322 81 41 chr5 47495766 47495889 -105041370 - L2 LINE L2 -465 2954 2827 7 947 232 365 135 36 chr5 47496930 47497152 -105040107 + MIRc SINE MIR 24 267 -1 7 947 416 367 7 41 chr5 47498497 47498642 -105038617 + B3 SINE B2 39 178 -38 7 947 441 0 0 0 chr5 47499937 47499986 -105037273 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 947 640 319 78 4 chr5 47500286 47500541 -105036718 - B4A SINE B4 -18 274 1 1 947 252 0 0 0 chr5 47500725 47500753 -105036506 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 947 396 370 16 47 chr5 47500753 47500943 -105036316 - B4A SINE B4 -80 212 29 3 947 456 316 106 35 chr5 47501030 47501256 -105036003 + MLT1D LTR MaLR 256 497 -8 4 947 486 0 0 0 chr5 47501424 47501478 -105035781 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 947 206 156 22 0 chr5 47501479 47501524 -105035735 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 947 607 249 109 28 chr5 47502148 47502359 -105034900 - MTEb LTR MaLR -151 228 1 7 947 1198 53 116 29 chr5 47503617 47503790 -105033469 + B2_Mm2 SINE B2 1 188 -7 8 947 279 349 25 19 chr5 47505123 47505292 -105031967 + MIRc SINE MIR 4 167 -95 9 947 1428 98 249 9 chr5 47505520 47505962 -105031297 - Lx3_Mus LINE L1 -8 7001 6452 1 947 1697 102 4 0 chr5 47505960 47506204 -105031055 + Lx3_Mus LINE L1 6162 6406 -603 1 947 414 0 0 0 chr5 47506268 47506314 -105030945 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 947 198 0 0 0 chr5 47506674 47506696 -105030563 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 947 21 57 0 0 chr5 47507826 47507861 -105029398 + AT_rich Low_complexity Low_complexity 1 35 0 1 947 43 47 0 0 chr5 47507931 47507995 -105029264 + AT_rich Low_complexity Low_complexity 1 64 0 1 947 1185 88 0 0 chr5 47508866 47509013 -105028246 + B1_Mus2 SINE Alu 1 147 0 1 947 327 323 16 16 chr5 47509488 47509617 -105027642 + L1MB5 LINE L1 5824 5952 -222 1 947 21 82 0 0 chr5 47509767 47509816 -105027443 + AT_rich Low_complexity Low_complexity 1 49 0 1 947 2802 41 5 8 chr5 47510316 47510688 -105026571 - L1Md_F2 LINE L1 -2 6580 6210 1 947 2876 130 21 0 chr5 47510683 47511161 -105026098 - Lx2 LINE L1 -923 6074 5587 1 947 230 239 0 0 chr5 47511150 47511196 -105026063 + L1VL4 LINE L1 476 521 -5781 2 947 29 28 0 0 chr5 47511234 47511270 -105025989 + AT_rich Low_complexity Low_complexity 1 36 0 2 947 349 280 85 28 chr5 47511343 47511696 -105025563 + L1M2 LINE L1 4138 4510 -1633 2 947 1009 156 15 15 chr5 47512274 47512470 -105024789 - Lx3B LINE L1 -3 6970 6775 2 947 1271 245 43 14 chr5 47512471 47512823 -105024436 + RMER5 LTR ERV1 152 513 -21 2 947 248 292 139 39 chr5 47512823 47513133 -105024126 + L1M2 LINE L1 4493 4833 -1310 2 947 26 30 0 0 chr5 47513257 47513290 -105023969 + AT_rich Low_complexity Low_complexity 1 33 0 2 947 243 292 158 0 chr5 47513443 47513645 -105023614 + L1M2 LINE L1 5167 5400 -743 2 947 2894 161 19 2 chr5 47513767 47514335 -105022924 - L1_Mur2 LINE L1 -1943 3934 3357 2 947 4488 113 9 6 chr5 47514336 47515020 -105022239 + L1_Mus4 LINE L1 5945 6630 -6 2 947 401 248 33 0 chr5 47515190 47515311 -105021948 + L1MA5 LINE L1 6173 6297 -3 2 947 2551 86 8 0 chr5 47515645 47515996 -105021263 + MTA_Mm LTR MaLR 1 354 -42 2 947 37978 25 2 7 chr5 47516027 47522230 -105015029 - L1Md_T LINE L1 0 6582 414 3 947 333 109 55 0 chr5 47522230 47522285 -105014974 + MTA_Mm LTR MaLR 343 400 0 2 947 3843 70 22 4 chr5 47522285 47522818 -105014441 + MTA_Mm-int LTR MaLR 1 543 -555 2 947 3560 150 11 14 chr5 47522818 47523439 -105013820 + Lx3_Mus LINE L1 6391 7009 0 3 947 21 0 0 0 chr5 47523574 47523595 -105013664 + AT_rich Low_complexity Low_complexity 1 21 0 3 947 345 365 83 31 chr5 47523855 47524084 -105013175 + Lx8 LINE L1 7066 7306 -167 3 947 1817 140 45 0 chr5 47524725 47525033 -105012226 + Lx3B LINE L1 6327 6648 -325 3 947 8266 107 34 8 chr5 47525032 47526573 -105010686 + Lx3_Mus LINE L1 5426 7009 0 3 947 250 253 0 52 chr5 47526580 47526676 -105010583 + A-rich Low_complexity Low_complexity 1 91 0 3 947 1402 213 31 13 chr5 47526676 47526994 -105010265 + Lx3B LINE L1 6645 6968 -5 3 947 288 152 0 0 chr5 47527730 47527796 -105009463 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 947 3526 198 52 50 chr5 47527980 47528992 -105008267 + Lx4B LINE L1 5832 6937 -121 3 947 21 36 0 0 chr5 47529028 47529056 -105008203 + AT_rich Low_complexity Low_complexity 1 28 0 3 947 419 308 0 33 chr5 47529357 47529478 -105007781 - PB1D7 SINE Alu -1 119 3 4 947 236 351 0 0 chr5 47529419 47529496 -105007763 - B4 SINE B4 -146 146 70 4 947 612 220 102 30 chr5 47529557 47529754 -105007505 + RLTR15 LTR ERVK 1 211 -148 4 947 1746 50 0 0 chr5 47529754 47529974 -105007285 + L1Md_F2 LINE L1 5366 5585 -298 4 947 8221 41 1 2 chr5 47529975 47530970 -105006289 + L1Md_F2 LINE L1 5587 6580 -2 4 947 402 209 68 30 chr5 47530970 47531103 -105006156 + RLTR15 LTR ERVK 206 343 -16 4 947 518 54 0 13 chr5 47531296 47531371 -105005888 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 947 22 0 0 0 chr5 47532452 47532474 -105004785 + AT_rich Low_complexity Low_complexity 1 22 0 4 947 2327 112 151 12 chr5 47533066 47533483 -105003776 + IAPLTR2_Mm LTR ERVK 1 475 0 4 947 530 125 23 125 chr5 47533484 47533612 -105003647 + IAPEz-int LTR ERVK 9 123 -6358 4 947 229 267 0 0 chr5 47533612 47533657 -105003602 + RLTR27 LTR ERVK 231 275 -34 4 947 226 321 0 0 chr5 47533685 47533738 -105003521 + RLTR27 LTR ERVK 223 275 -34 4 947 3985 68 2 18 chr5 47533738 47534322 -105002937 + IAPEz-int LTR ERVK 116 662 -5819 4 947 2555 70 0 3 chr5 47534322 47534665 -105002594 + IAPEz-int LTR ERVK 1359 1700 -4781 4 947 6501 47 2 6 chr5 47534658 47535490 -105001769 + IAPEz-int LTR ERVK 5651 6479 -2 4 947 2460 107 132 16 chr5 47535492 47535918 -105001341 + IAPLTR2_Mm LTR ERVK 1 475 0 4 947 205 312 21 11 chr5 47536653 47536678 -105000581 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 947 428 33 33 0 chr5 47536678 47536739 -105000520 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 5 947 205 312 21 11 chr5 47536739 47536807 -105000452 + (TA)n Simple_repeat Simple_repeat 1 69 0 5 947 288 0 0 0 chr5 47536991 47537023 -105000236 + (TA)n Simple_repeat Simple_repeat 1 32 0 5 947 21 0 0 0 chr5 47537034 47537055 -105000204 + AT_rich Low_complexity Low_complexity 1 21 0 5 947 270 56 0 0 chr5 47537521 47537557 -104999702 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 947 6867 66 16 0 chr5 47537559 47538453 -104998806 - RLTR13D5 LTR ERVK -113 910 3 5 947 3728 88 37 11 chr5 47538488 47539029 -104998230 - L1Md_F2 LINE L1 -1 6581 6027 5 947 2127 193 34 39 chr5 47539032 47539566 -104997693 - L1_Mur2 LINE L1 -202 5675 5145 5 947 2376 60 54 3 chr5 47539566 47539883 -104997376 + IAPEY_LTR LTR ERVK 53 385 0 5 947 5983 185 53 41 chr5 47539883 47541412 -104995847 - L1_Mur2 LINE L1 -729 5148 3602 5 947 9854 12 2 0 chr5 47542185 47544062 -104993197 - L1Md_T LINE L1 -3 6579 4700 5 947 4466 12 0 0 chr5 47544064 47544557 -104992702 + MT2_Mm LTR ERVL 1 493 0 6 947 45241 15 6 0 chr5 47544557 47549883 -104987376 + MERVL-int LTR ERVL 1 5360 -125 6 947 390 167 46 35 chr5 47549883 47549970 -104987289 + ORR1A3-int LTR MaLR 553 640 -1323 6 947 302 0 0 0 chr5 47549970 47550008 -104987251 + MERVL-int LTR ERVL 5448 5485 0 6 947 4466 12 0 0 chr5 47550008 47550501 -104986758 + MT2_Mm LTR ERVL 1 493 0 6 947 26369 38 0 0 chr5 47550501 47555268 -104981991 - L1Md_Gf LINE L1 -1181 4705 1 6 947 669 291 105 43 chr5 47556799 47557122 -104980137 + MER121 Unknown Unknown 64 406 -6 6 947 26 30 0 0 chr5 47557365 47557398 -104979861 + AT_rich Low_complexity Low_complexity 1 33 0 6 947 293 0 0 26 chr5 47557414 47557452 -104979807 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 947 444 302 8 45 chr5 47557458 47557590 -104979669 - RSINE1 SINE B4 -33 132 6 6 947 3066 66 2 5 chr5 47557939 47558336 -104978923 + MTA_Mm LTR MaLR 1 396 0 6 947 1270 205 48 74 chr5 47558719 47559030 -104978229 - ORR1C2 LTR MaLR -4 380 78 6 947 2073 241 65 16 chr5 47559252 47559804 -104977455 - Lx7 LINE L1 -1531 6165 5587 6 947 1750 318 53 31 chr5 47559816 47560596 -104976663 - Lx8 LINE L1 -2 7471 6675 7 947 291 362 14 47 chr5 47560598 47560746 -104976513 - MLT1A0 LTR MaLR -218 147 5 7 947 649 242 71 4 chr5 47560962 47561118 -104976141 + MTC LTR MaLR 113 271 -136 7 947 4753 188 89 63 chr5 47561244 47562106 -104975153 - RMER12 LTR ERVK -143 1179 287 7 947 1534 78 24 0 chr5 47562106 47562312 -104974947 - L1_Mus1 LINE L1 0 6567 6357 7 947 4753 188 89 63 chr5 47562312 47562599 -104974660 - RMER12 LTR ERVK -1036 286 2 7 947 494 235 37 29 chr5 47562599 47562723 -104974536 + MTC LTR MaLR 289 413 -8 7 947 350 132 13 0 chr5 47562997 47563073 -104974186 + (TA)n Simple_repeat Simple_repeat 2 78 0 7 947 375 332 80 73 chr5 47563182 47563228 -104974031 - L1MEf LINE L1 -4901 1299 1257 7 947 230 0 0 32 chr5 47563228 47563259 -104974000 + (GTGTG)n Simple_repeat Simple_repeat 1 30 0 7 947 375 332 80 73 chr5 47563259 47563501 -104973758 - L1MEf LINE L1 -4944 1256 1010 7 947 22 56 0 0 chr5 47563744 47563780 -104973479 + AT_rich Low_complexity Low_complexity 1 36 0 7 947 21 82 0 0 chr5 47563995 47564044 -104973215 + AT_rich Low_complexity Low_complexity 1 49 0 7 947 240 226 0 0 chr5 47564094 47564147 -104973112 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 8 947 1770 199 81 19 chr5 47564147 47564578 -104972681 - Lx5 LINE L1 -811 6239 5782 8 947 5739 134 85 6 chr5 47564566 47565720 -104971539 - L1_Mus4 LINE L1 -4 6632 5381 8 947 215 244 0 0 chr5 47565759 47565800 -104971459 + polypyrimidine Low_complexity Low_complexity 1 41 0 8 947 4053 169 33 5 chr5 47565801 47566562 -104970697 - Lx LINE L1 -13 6641 5860 8 947 11998 184 25 43 chr5 47566562 47566608 -104970651 - L1_Mus4 LINE L1 -1032 4845 4800 8 947 369 0 0 0 chr5 47566608 47566649 -104970610 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 8 947 11998 184 25 43 chr5 47566649 47567011 -104970248 - L1_Mus4 LINE L1 -1078 4799 4453 8 947 3746 79 0 12 chr5 47567011 47567523 -104969736 - L1Md_F2 LINE L1 -12 6570 6065 8 947 11998 184 25 43 chr5 47567523 47569873 -104967386 - L1_Mus4 LINE L1 -1425 4452 2140 8 947 34377 79 5 3 chr5 47569865 47576174 -104961085 - L1Md_F2 LINE L1 -4 6578 256 8 947 3720 232 36 11 chr5 47576170 47577333 -104959926 - L1_Mus4 LINE L1 -3725 2152 895 8 947 2877 75 2 50 chr5 47577737 47578156 -104959103 + L1_Mus2 LINE L1 6168 6566 0 8 947 25 0 0 0 chr5 47578712 47578737 -104958522 + AT_rich Low_complexity Low_complexity 1 25 0 8 947 459 0 0 0 chr5 47578917 47578968 -104958291 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 947 369 0 0 0 chr5 47578968 47579008 -104958251 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 948 186 191 0 0 chr5 47579467 47579509 -104957750 + GA-rich Low_complexity Low_complexity 2 43 0 9 948 5105 115 32 5 chr5 47580243 47581027 -104956232 - Lx LINE L1 0 6654 5850 9 948 21 57 0 0 chr5 47581225 47581260 -104955999 + AT_rich Low_complexity Low_complexity 1 35 0 9 948 377 95 0 16 chr5 47581503 47581567 -104955692 + (TA)n Simple_repeat Simple_repeat 2 64 0 9 948 1008 113 0 7 chr5 47581590 47581733 -104955526 - B1_Mus1 SINE Alu -6 142 1 9 948 384 22 0 0 chr5 47581943 47581988 -104955271 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 948 234 310 86 17 chr5 47582463 47582599 -104954660 - MIRb SINE MIR -38 230 86 9 948 374 295 112 50 chr5 47582846 47583149 -104954110 - L1MC1 LINE L1 -24 6309 5988 9 948 823 311 73 21 chr5 47583161 47583776 -104953483 - L1MC1 LINE L1 -743 5403 4757 9 948 29280 103 19 12 chr5 47583875 47586419 -104950840 + L1Md_A LINE L1 416 2997 -2886 1 948 237 22 43 43 chr5 47586419 47586466 -104950793 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 948 29280 71 14 1 chr5 47586466 47588716 -104948543 + L1Md_A LINE L1 2998 5253 -630 1 948 1044 226 90 37 chr5 47588716 47589015 -104948244 + RLTR46 LTR ERVK 1 315 -5 1 948 456 243 35 111 chr5 47589024 47589223 -104948036 + IAPEY3-int LTR ERVK 3 186 -7494 1 948 672 218 62 10 chr5 47589219 47589427 -104947832 + IAPEY3-int LTR ERVK 535 753 -6927 1 948 726 161 6 28 chr5 47589444 47589623 -104947636 + GA-rich Low_complexity Low_complexity 2 176 0 1 948 755 176 13 48 chr5 47589633 47589907 -104947352 + IAP-d-int LTR ERVK 55 503 -6039 1 948 1381 130 103 0 chr5 47589907 47590130 -104947129 + IAP-d-int LTR ERVK 5007 5252 -1290 1 948 1694 158 74 0 chr5 47590133 47590499 -104946760 + IAPEY3-int LTR ERVK 6965 7383 -297 1 948 1216 209 60 15 chr5 47590484 47590819 -104946440 + IAP-d-int LTR ERVK 6129 6478 -3 1 948 1123 211 101 40 chr5 47590823 47591120 -104946139 + RLTR46 LTR ERVK 1 315 -5 1 948 2565 71 3 0 chr5 47591126 47591464 -104945795 + L1Md_F2 LINE L1 5248 5586 -297 1 948 7991 50 1 0 chr5 47591465 47592440 -104944819 + L1Md_F2 LINE L1 5588 6563 -19 1 948 1811 60 12 27 chr5 47592438 47592695 -104944564 + L1Md_F3 LINE L1 6332 6584 0 1 948 212 128 21 21 chr5 47592735 47592783 -104944476 + T-rich Low_complexity Low_complexity 2 49 0 1 948 216 0 0 0 chr5 47594900 47594924 -104942335 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1 948 232 158 69 58 chr5 47595845 47596019 -104941240 + (TA)n Simple_repeat Simple_repeat 2 177 0 1 948 36 70 0 0 chr5 47596028 47596099 -104941160 + AT_rich Low_complexity Low_complexity 1 71 0 1 948 205 391 9 26 chr5 47596199 47596312 -104940947 - MIRb SINE MIR -79 189 79 1 948 303 353 31 57 chr5 47596467 47596626 -104940633 - RSINE1 SINE B4 -6 159 5 1 948 282 56 0 0 chr5 47597189 47597225 -104940034 + (A)n Simple_repeat Simple_repeat 1 36 0 1 948 237 312 49 16 chr5 47598347 47598461 -104938798 - MIRc SINE MIR -37 231 106 1 948 1858 218 9 50 chr5 47599171 47599610 -104937649 - MTC LTR MaLR 0 421 1 1 948 236 284 23 54 chr5 47599809 47599939 -104937320 - Lx7 LINE L1 -16 7680 7555 1 948 288 0 0 0 chr5 47599940 47599972 -104937287 + (CAA)n Simple_repeat Simple_repeat 1 32 0 1 948 333 0 0 0 chr5 47599972 47600008 -104937251 + (TAG)n Simple_repeat Simple_repeat 2 38 0 1 948 190 323 0 30 chr5 47600637 47600704 -104936555 - L3 LINE CR1 -1627 2862 2798 1 948 240 305 15 30 chr5 47601210 47601345 -104935914 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 1 948 21 36 0 0 chr5 47601492 47601520 -104935739 + AT_rich Low_complexity Low_complexity 1 28 0 1 948 297 351 9 0 chr5 47602122 47602236 -104935023 - MER5A DNA MER1_type -22 167 53 1 948 341 346 18 24 chr5 47603021 47603187 -104934072 + MER89 LTR ERV1 391 555 -4 1 948 981 236 23 5 chr5 47603242 47603463 -104933796 - Lx9 LINE L1 -366 7278 7054 1 948 398 283 238 4 chr5 47603452 47603679 -104933580 + Lx9 LINE L1 6360 6639 -1005 1 948 333 346 0 0 chr5 47603693 47603797 -104933462 + PB1D10 SINE Alu 1 104 -13 1 948 199 50 24 48 chr5 47604254 47604296 -104932963 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 948 21 36 0 0 chr5 47604662 47604690 -104932569 + AT_rich Low_complexity Low_complexity 1 28 0 1 948 752 260 97 15 chr5 47604787 47605126 -104932133 + L1MA6 LINE L1 5802 6168 -132 1 948 228 211 35 0 chr5 47606302 47606359 -104930900 - MER20 DNA MER1_type -37 182 124 1 948 380 329 29 29 chr5 47606432 47606604 -104930655 + Lx8 LINE L1 7043 7214 -259 1 948 290 275 136 53 chr5 47606607 47606776 -104930483 + RMER15 LTR ERVL 393 575 0 1 948 3297 158 36 40 chr5 47606899 47607501 -104929758 - MT2B LTR ERVL 0 601 2 1 948 180 219 0 0 chr5 47608219 47608260 -104928999 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 1 948 22 80 0 0 chr5 47608332 47608382 -104928877 + AT_rich Low_complexity Low_complexity 1 50 0 1 948 1929 114 114 3 chr5 47608413 47608729 -104928530 + L1_Mus4 LINE L1 6266 6616 -20 1 948 320 232 10 0 chr5 47608768 47608867 -104928392 + (CA)n Simple_repeat Simple_repeat 2 101 0 1 948 239 333 34 34 chr5 47608957 47609075 -104928184 + MIRb SINE MIR 32 149 -119 1 948 23 0 0 0 chr5 47609965 47609988 -104927271 + AT_rich Low_complexity Low_complexity 1 23 0 1 948 507 33 0 0 chr5 47610300 47610361 -104926898 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 948 186 43 0 0 chr5 47610386 47610409 -104926850 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 948 723 175 75 2 chr5 47610739 47610956 -104926303 + L1_Mur2 LINE L1 950 1242 -6470 1 948 285 146 0 0 chr5 47610956 47611004 -104926255 + (TAA)n Simple_repeat Simple_repeat 1 48 0 1 948 388 304 35 96 chr5 47611122 47611364 -104925895 + RLTR12B LTR ERVK 213 503 -25 1 948 4401 178 123 28 chr5 47611398 47612461 -104924798 + L1_Mur2 LINE L1 3559 4722 -1155 1 948 785 289 37 59 chr5 47612461 47612733 -104924526 + Lx5 LINE L1 6780 7045 -5 1 948 835 290 89 34 chr5 47612815 47613254 -104924005 - Helitron1Nb_Mam RC Helitron -545 571 109 1 948 643 120 0 17 chr5 47613575 47613694 -104923565 + (TA)n Simple_repeat Simple_repeat 2 118 0 1 948 380 349 73 24 chr5 47613858 47614146 -104923113 + L1M5 LINE L1 4535 4836 -1310 1 948 2157 210 40 55 chr5 47614862 47615412 -104921847 - Lx7 LINE L1 -267 7429 6888 1 948 4454 47 0 7 chr5 47615736 47616293 -104920966 + L1Md_F2 LINE L1 6028 6580 -2 1 948 454 306 64 79 chr5 47616571 47616773 -104920486 - MER20 DNA MER1_type -14 205 7 1 948 2729 215 111 69 chr5 47617079 47617907 -104919352 + Lx7 LINE L1 6826 7688 -8 1 948 522 148 0 0 chr5 47617907 47618008 -104919251 + (GA)n Simple_repeat Simple_repeat 1 101 0 1 948 365 297 92 75 chr5 47618820 47619166 -104918093 + L1M5 LINE L1 4956 5307 -839 1 948 509 335 48 29 chr5 47619738 47620275 -104916984 - L1M2 LINE L1 -498 5802 5254 1 948 336 349 90 42 chr5 47620308 47620619 -104916640 - L1M2 LINE L1 -948 5195 4870 1 948 215 348 130 0 chr5 47620770 47620839 -104916420 + RSINE1 SINE B4 2 79 -86 1 948 4098 153 83 1 chr5 47620841 47621576 -104915683 + Lx3B LINE L1 6177 6971 -2 1 948 23 33 0 0 chr5 47621585 47621615 -104915644 + AT_rich Low_complexity Low_complexity 1 30 0 1 948 241 339 84 22 chr5 47621909 47622087 -104915172 + L2a LINE L2 3233 3421 -5 1 948 216 158 0 0 chr5 47622300 47622338 -104914921 + (TATG)n Simple_repeat Simple_repeat 3 40 0 1 948 1464 64 15 5 chr5 47622563 47622766 -104914493 + L1Md_F3 LINE L1 6377 6581 -3 1 948 5842 101 12 0 chr5 47623393 47624258 -104913001 - L1_Mur1 LINE L1 -831 5055 4181 1 948 8757 108 47 6 chr5 47624257 47625660 -104911599 + Lx3_Mus LINE L1 5551 7007 -2 1 948 327 346 0 19 chr5 47625671 47625777 -104911482 - B3 SINE B2 -103 113 10 1 948 1412 180 34 104 chr5 47626346 47626524 -104910735 - RMER17C LTR ERVK 0 410 223 1 948 2759 18 2 217 chr5 47626524 47627021 -104910238 - RLTR10 LTR ERVK 0 390 1 1 948 1412 180 34 104 chr5 47627021 47627283 -104909976 - RMER17C LTR ERVK -188 222 1 1 948 554 312 7 28 chr5 47627372 47627514 -104909745 + RSINE1 SINE B4 26 164 -1 1 948 513 0 0 0 chr5 47627645 47627702 -104909557 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 948 486 0 0 0 chr5 47627702 47627755 -104909504 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 948 22 0 0 0 chr5 47628008 47628030 -104909229 + AT_rich Low_complexity Low_complexity 1 22 0 1 948 1838 171 36 73 chr5 47628571 47628982 -104908277 - RMER10B LTR ERVL 0 398 3 1 948 216 229 66 9 chr5 47629241 47629347 -104907912 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 1 948 923 89 80 22 chr5 47629353 47629364 -104907895 - B1_Mm SINE Alu 0 147 139 1 948 315 0 0 0 chr5 47629364 47629399 -104907860 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 948 923 89 80 22 chr5 47629399 47629525 -104907734 - B1_Mm SINE Alu -9 138 2 1 948 1707 219 172 25 chr5 47629926 47630525 -104906734 - RMER6C LTR ERVK -3 687 1 1 948 21 0 0 0 chr5 47630865 47630886 -104906373 + AT_rich Low_complexity Low_complexity 1 21 0 1 948 385 192 60 60 chr5 47630901 47631084 -104906175 - Lx9 LINE L1 -33 7611 7429 1 948 512 331 103 43 chr5 47631624 47631905 -104905354 - RMER15 LTR ERVL -3 572 275 1 948 282 200 15 44 chr5 47632060 47632128 -104905131 - RMER15 LTR ERVL -509 66 1 1 948 234 0 0 0 chr5 47632332 47632358 -104904901 + (T)n Simple_repeat Simple_repeat 1 26 0 1 948 1162 68 0 7 chr5 47632360 47632508 -104904751 - B1_Mus2 SINE Alu 0 147 1 1 948 357 281 9 3 chr5 47633289 47633389 -104903870 + B3 SINE B2 19 120 -78 1 948 27 29 0 0 chr5 47633419 47633453 -104903806 + AT_rich Low_complexity Low_complexity 1 34 0 1 948 269 353 103 27 chr5 47633467 47633727 -104903532 + MLT1C LTR MaLR 61 340 -127 1 948 1778 147 19 40 chr5 47633727 47634052 -104903207 + ORR1A4 LTR MaLR 4 321 -8 1 948 347 284 43 0 chr5 47634057 47634173 -104903086 + MLT1C LTR MaLR 347 467 0 1 948 601 44 44 0 chr5 47634428 47634519 -104902740 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 1 948 528 314 63 89 chr5 47634650 47635032 -104902227 - MTE2a LTR MaLR -14 405 14 1 948 1095 141 0 0 chr5 47635052 47635393 -104901866 + (TG)n Simple_repeat Simple_repeat 1 341 0 1 948 206 152 65 11 chr5 47635943 47636036 -104901223 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 948 572 0 15 0 chr5 47636600 47636668 -104900591 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 1 948 3286 42 2 0 chr5 47637425 47637828 -104899431 + L1Md_F2 LINE L1 6176 6579 -3 1 948 2119 198 14 5 chr5 47638084 47638501 -104898758 - MTC LTR MaLR 0 421 1 1 948 217 243 0 13 chr5 47639168 47639243 -104898016 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 948 181 355 0 13 chr5 47639472 47639549 -104897710 + L2a LINE L2 3347 3422 -4 1 948 825 324 51 100 chr5 47640122 47640513 -104896746 - MTE2a LTR MaLR -4 375 4 1 948 180 0 0 0 chr5 47640600 47640620 -104896639 + (T)n Simple_repeat Simple_repeat 1 20 0 1 948 2016 71 36 0 chr5 47640628 47640909 -104896350 - ORR1A1 LTR MaLR -55 291 1 1 948 9018 4 0 0 chr5 47641139 47642602 -104894657 - L1Md_A LINE L1 0 6582 5120 2 948 394 286 102 50 chr5 47642714 47643056 -104894203 - L1MA8 LINE L1 -42 6249 5890 2 948 312 27 0 0 chr5 47643581 47643618 -104893641 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 948 200 400 10 0 chr5 47643973 47644073 -104893186 - MIRb SINE MIR -111 157 57 2 948 707 325 39 10 chr5 47644195 47644400 -104892859 - B3 SINE B2 -5 211 1 2 948 22 0 0 0 chr5 47644583 47644605 -104892654 + AT_rich Low_complexity Low_complexity 1 22 0 2 948 24 0 0 0 chr5 47644689 47644713 -104892546 + AT_rich Low_complexity Low_complexity 1 24 0 2 948 1994 43 4 4 chr5 47645499 47645753 -104891506 - L1Md_F2 LINE L1 -8 6574 6321 2 948 191 344 16 0 chr5 47646178 47646239 -104891020 + MIRb SINE MIR 165 226 -42 2 948 489 154 0 0 chr5 47646603 47646694 -104890565 + (CA)n Simple_repeat Simple_repeat 2 92 0 2 948 434 377 24 0 chr5 47648535 47648742 -104888517 + MER58A DNA MER1_type 11 222 -2 2 948 366 310 102 127 chr5 47648941 47649303 -104887956 + ORR1E LTR MaLR 5 357 -2 2 948 1970 247 59 13 chr5 47650488 47651017 -104886242 + RLTR12A LTR ERVK 1 553 -15 2 948 414 0 0 0 chr5 47654290 47654336 -104882923 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 948 420 220 0 29 chr5 47654730 47654866 -104882393 + CT-rich Low_complexity Low_complexity 2 133 0 2 948 181 245 55 36 chr5 47656675 47656730 -104880529 + L3 LINE CR1 65 120 -4369 2 948 577 314 34 7 chr5 47656752 47657050 -104880209 - L1M2 LINE L1 -3479 2664 2359 2 948 298 221 23 11 chr5 47657230 47657317 -104879942 - Lx7 LINE L1 0 7696 7609 2 948 21 36 0 0 chr5 47657386 47657414 -104879845 + AT_rich Low_complexity Low_complexity 1 28 0 2 948 265 381 57 11 chr5 47657505 47657680 -104879579 - MER31A LTR ERV1 -124 361 179 2 948 330 152 0 0 chr5 47657828 47657887 -104879372 + CT-rich Low_complexity Low_complexity 3 61 0 2 948 290 294 109 0 chr5 47658049 47658168 -104879091 - MLT1D LTR MaLR -7 498 367 2 948 550 267 27 27 chr5 47658176 47658326 -104878933 + RLTR15 LTR ERVK 1 150 -209 2 948 1236 192 178 3 chr5 47658326 47658613 -104878646 + L1VL2 LINE L1 65 401 -5934 2 948 14864 182 20 12 chr5 47658612 47658880 -104878379 + Lx LINE L1 2835 3108 -2775 2 948 1133 68 0 0 chr5 47658880 47659027 -104878232 + B1_Mm SINE Alu 1 147 0 2 948 14864 182 20 12 chr5 47659027 47659069 -104878190 + Lx LINE L1 3109 3141 -2742 2 948 183 42 0 0 chr5 47659069 47659093 -104878166 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2 948 14864 182 20 12 chr5 47659093 47660296 -104876963 + Lx LINE L1 3142 4363 -1520 2 948 579 62 0 0 chr5 47660296 47660376 -104876883 + (TA)n Simple_repeat Simple_repeat 2 81 0 2 948 14864 182 20 12 chr5 47660376 47661360 -104875899 + Lx LINE L1 4364 5357 -526 2 948 2840 106 38 5 chr5 47661360 47661805 -104875454 - L1_Mus3 LINE L1 -1 6637 6178 2 948 14864 118 18 6 chr5 47661805 47663084 -104874175 + Lx LINE L1 5358 6650 -4 2 948 642 239 58 11 chr5 47663084 47663274 -104873985 + RLTR15 LTR ERVK 136 334 -25 2 948 568 351 84 64 chr5 47663299 47663658 -104873601 - MLT1D LTR MaLR -134 371 6 2 948 526 308 79 54 chr5 47663963 47664239 -104873020 + ORR1E LTR MaLR 1 284 -90 2 948 303 250 0 0 chr5 47666912 47666980 -104870279 - L1_Mur3 LINE L1 -6930 782 715 2 948 23 33 0 0 chr5 47667151 47667181 -104870078 + AT_rich Low_complexity Low_complexity 1 30 0 2 948 239 330 20 20 chr5 47668891 47668990 -104868269 - Lx9 LINE L1 -709 6935 6837 2 948 244 299 100 68 chr5 47668988 47669178 -104868081 + Lx9 LINE L1 6942 7137 -507 2 948 343 362 18 18 chr5 47669232 47669395 -104867864 + Lx9 LINE L1 7235 7397 -247 2 948 866 155 6 0 chr5 47669440 47669608 -104867651 + (TG)n Simple_repeat Simple_repeat 2 170 0 2 948 4126 181 53 76 chr5 47670499 47671402 -104865857 + RMER19B LTR ERVK 1 884 -18 2 948 5306 58 3 0 chr5 47671402 47672072 -104865187 + L1Md_F2 LINE L1 5911 6582 0 2 948 241 329 38 0 chr5 47672227 47672306 -104864953 - ID4_ SINE ID 0 83 2 2 948 38026 30 0 0 chr5 47672525 47678964 -104858295 - L1Md_T LINE L1 0 6585 50 2 948 511 288 92 23 chr5 47678983 47679157 -104858102 - B3 SINE B2 -30 186 1 2 948 201 121 0 0 chr5 47680557 47680590 -104856669 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 2 948 456 67 0 0 chr5 47680595 47680655 -104856604 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 2 948 4713 134 8 13 chr5 47680809 47681565 -104855694 - Lx2 LINE L1 -12 6985 6234 2 948 1324 142 4 32 chr5 47681645 47681892 -104855367 + Lx LINE L1 6397 6636 -18 2 948 1723 171 0 7 chr5 47681898 47682205 -104855054 - Lx2 LINE L1 -765 6232 5928 2 948 589 343 58 74 chr5 47682302 47682718 -104854541 + MTEa LTR MaLR 1 405 -14 2 948 195 42 0 0 chr5 47684736 47684760 -104852499 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 948 1568 190 44 44 chr5 47685122 47685326 -104851933 - RMER17C LTR ERVK -3 407 200 2 948 1048 81 12 0 chr5 47685326 47685487 -104851772 + (GA)n Simple_repeat Simple_repeat 2 164 0 2 948 1568 190 44 44 chr5 47685487 47685689 -104851570 - RMER17C LTR ERVK -211 199 1 2 948 437 0 19 0 chr5 47686299 47686352 -104850907 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 2 948 371 0 0 58 chr5 47687300 47687352 -104849907 + (T)n Simple_repeat Simple_repeat 1 49 0 2 948 24 67 0 0 chr5 47688084 47688129 -104849130 + AT_rich Low_complexity Low_complexity 1 45 0 2 948 29 78 0 0 chr5 47688404 47688468 -104848791 + AT_rich Low_complexity Low_complexity 1 64 0 2 948 220 246 39 8 chr5 47688574 47688671 -104848588 + (TTTG)n Simple_repeat Simple_repeat 1 100 0 2 948 1275 89 0 0 chr5 47688671 47688850 -104848409 + (TTTTC)n Simple_repeat Simple_repeat 1 179 0 2 948 220 246 39 8 chr5 47688850 47688879 -104848380 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2 948 709 110 0 45 chr5 47688883 47689016 -104848243 - L1_Mus1 LINE L1 0 6567 6441 2 948 1245 266 84 72 chr5 47689195 47689682 -104847577 + RMER13A LTR ERVK 1 493 -367 2 948 562 165 39 0 chr5 47690134 47690237 -104847022 + URR1B DNA MER1_type 118 224 -1 2 948 492 234 101 23 chr5 47690247 47690424 -104846835 + MTD LTR MaLR 191 404 -15 2 948 237 299 212 7 chr5 47691534 47691699 -104845560 + MLT2B4 LTR ERVL 14 209 -255 2 948 243 88 0 0 chr5 47692307 47692341 -104844918 + (T)n Simple_repeat Simple_repeat 1 34 0 2 948 486 0 0 0 chr5 47693697 47693751 -104843508 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 948 231 394 28 62 chr5 47693806 47694017 -104843242 - MLT1E3 LTR MaLR -5 619 416 2 948 265 337 20 0 chr5 47694215 47694316 -104842943 + Lx8 LINE L1 6921 7023 -450 2 948 3351 39 0 130 chr5 47694371 47694872 -104842387 - RLTR10C LTR ERVK 0 436 1 2 948 7201 112 17 5 chr5 47694882 47696050 -104841209 - L1_Mus4 LINE L1 -8 6628 5451 2 948 4298 38 39 0 chr5 47696050 47696584 -104840675 - L1Md_F3 LINE L1 0 6584 6030 2 948 5883 171 25 32 chr5 47696584 47697331 -104839928 - L1_Mus4 LINE L1 -433 5450 4716 2 948 14153 124 14 14 chr5 47697367 47700285 -104836974 - L1VL4 LINE L1 -448 3111 194 2 948 258 355 12 21 chr5 47700617 47700727 -104836532 + RSINE1 SINE B4 2 111 -181 2 948 402 293 115 39 chr5 47700758 47700914 -104836345 + MLT1-int LTR MaLR 1193 1360 -11 2 948 463 319 55 40 chr5 47701305 47701758 -104835501 - L1MC LINE L1 -2590 3556 3097 2 948 569 286 114 9 chr5 47701959 47702178 -104835081 - Lx8 LINE L1 -362 7111 6870 2 948 186 191 0 0 chr5 47702195 47702237 -104835022 + A-rich Low_complexity Low_complexity 1 42 0 2 948 272 297 139 0 chr5 47702341 47702442 -104834817 - Lx5 LINE L1 -425 6625 6511 2 948 1129 315 56 29 chr5 47702456 47702901 -104834358 - Lx8 LINE L1 -755 6718 6262 2 948 235 308 96 35 chr5 47703311 47703540 -104833719 - L1MD LINE L1 -3419 2727 2485 2 948 241 289 25 12 chr5 47703837 47703968 -104833291 - MLT1E3 LTR MaLR -8 646 506 2 948 33 25 0 0 chr5 47704549 47704589 -104832670 + AT_rich Low_complexity Low_complexity 1 40 0 2 948 291 272 24 12 chr5 47704637 47704719 -104832540 - RSINE1 SINE B4 -40 125 43 2 948 351 320 191 42 chr5 47704855 47705185 -104832074 + MTEb LTR MaLR 1 379 0 2 948 21 36 0 0 chr5 47706224 47706252 -104831007 + AT_rich Low_complexity Low_complexity 1 28 0 2 948 820 314 166 38 chr5 47706252 47706907 -104830352 - Lx8 LINE L1 -5 7468 6730 2 948 346 289 48 36 chr5 47706921 47706937 -104830322 - CYRA11_Mm Unknown Y-chromosome -290 327 262 2 948 704 164 23 0 chr5 47706937 47707065 -104830194 + URR1B DNA MER1_type 86 216 -9 2 948 346 289 48 36 chr5 47707065 47707086 -104830173 - CYRA11_Mm Unknown Y-chromosome -290 261 161 2 948 525 71 0 0 chr5 47708118 47708188 -104829071 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 2 948 223 167 0 0 chr5 47709278 47709320 -104827939 + (TCTCTG)n Simple_repeat Simple_repeat 5 46 0 2 948 3578 116 57 20 chr5 47709468 47710067 -104827192 + Lx LINE L1 6029 6649 -5 2 949 273 319 22 28 chr5 47710264 47710384 -104826875 - B1F SINE Alu -8 141 2 2 949 294 29 0 0 chr5 47710385 47710420 -104826839 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 949 296 383 59 12 chr5 47710566 47710735 -104826524 + Lx8 LINE L1 7046 7222 -251 2 949 312 324 83 35 chr5 47710770 47710914 -104826345 + RMER15 LTR ERVL 425 575 0 2 949 1235 231 8 122 chr5 47711710 47712079 -104825180 + ORR1C1 LTR MaLR 1 327 -51 2 949 3590 77 0 6 chr5 47712079 47712552 -104824707 + L1Md_F2 LINE L1 6099 6568 -14 2 949 26 0 0 0 chr5 47712658 47712684 -104824575 + AT_rich Low_complexity Low_complexity 1 26 0 2 949 410 49 16 0 chr5 47712688 47712749 -104824510 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 2 949 252 182 23 0 chr5 47712749 47712793 -104824466 + ORR1C1 LTR MaLR 326 370 -8 2 949 342 0 0 0 chr5 47713059 47713097 -104824162 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 949 185 79 79 0 chr5 47713729 47713767 -104823492 + T-rich Low_complexity Low_complexity 5 45 0 2 949 405 0 0 0 chr5 47715217 47715262 -104821997 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 949 438 20 0 0 chr5 47715262 47715312 -104821947 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 949 1374 329 70 66 chr5 47715430 47716329 -104820930 - Lx8 LINE L1 -76 7397 6495 2 949 787 256 86 102 chr5 47716850 47717233 -104820026 + MTE2a LTR MaLR 1 377 -2 2 949 21 0 0 0 chr5 47717644 47717665 -104819594 + AT_rich Low_complexity Low_complexity 1 21 0 2 949 393 149 0 0 chr5 47717849 47717916 -104819343 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 949 181 396 25 25 chr5 47718782 47718945 -104818314 + MIR SINE MIR 74 236 -26 3 949 207 0 0 0 chr5 47719418 47719441 -104817818 + (T)n Simple_repeat Simple_repeat 1 23 0 3 949 339 85 0 0 chr5 47720548 47720595 -104816664 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 949 555 229 27 27 chr5 47720831 47720979 -104816280 + B1_Mur2 SINE Alu 1 148 -1 3 949 462 322 79 94 chr5 47721049 47721378 -104815881 - MER2 DNA MER2_type -20 325 2 3 949 207 0 0 0 chr5 47722402 47722425 -104814834 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3 949 25 75 0 0 chr5 47723290 47723343 -104813916 + AT_rich Low_complexity Low_complexity 1 53 0 3 949 21 0 0 0 chr5 47723677 47723698 -104813561 + AT_rich Low_complexity Low_complexity 1 21 0 3 949 285 182 0 0 chr5 47723717 47723772 -104813487 + A-rich Low_complexity Low_complexity 1 55 0 3 949 852 224 129 47 chr5 47724802 47725144 -104812115 + ORR1D1 LTR MaLR 1 370 -4 3 949 203 176 0 50 chr5 47725273 47725333 -104811926 + T-rich Low_complexity Low_complexity 2 58 0 3 949 335 291 25 120 chr5 47725738 47725980 -104811279 - RMER1C Other Other -639 703 485 3 949 592 257 38 18 chr5 47726411 47726602 -104810657 + B3A SINE B2 4 201 -15 3 949 1086 79 6 12 chr5 47727308 47727474 -104809785 + L1Md_F2 LINE L1 6407 6571 -11 3 949 225 0 0 0 chr5 47728593 47728618 -104808641 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 949 738 192 220 0 chr5 47729539 47729721 -104807538 + URR1A DNA MER1_type 5 226 0 3 949 180 77 0 0 chr5 47729793 47729819 -104807440 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 949 25 0 0 0 chr5 47730453 47730478 -104806781 + AT_rich Low_complexity Low_complexity 1 25 0 3 949 1904 136 11 85 chr5 47730531 47730884 -104806375 + ORR1A2 LTR MaLR 1 327 0 3 949 24 0 0 0 chr5 47731647 47731671 -104805588 + AT_rich Low_complexity Low_complexity 1 24 0 3 949 490 302 40 0 chr5 47731795 47731921 -104805338 + RSINE1 SINE B4 2 132 -33 3 949 1125 78 0 0 chr5 47731959 47732112 -104805147 + (CATATA)n Simple_repeat Simple_repeat 2 154 0 3 949 307 332 64 32 chr5 47732236 47732454 -104804805 - L1ME3B LINE L1 -181 6059 5835 3 949 447 180 42 24 chr5 47733728 47733941 -104803318 + (TCTA)n Simple_repeat Simple_repeat 1 217 0 3 949 300 405 8 8 chr5 47734016 47734138 -104803121 - B4A SINE B4 0 292 171 3 949 261 315 0 0 chr5 47734415 47734504 -104802755 - RMER15 LTR ERVL -105 470 382 3 949 21 0 0 0 chr5 47734864 47734885 -104802374 + AT_rich Low_complexity Low_complexity 1 21 0 3 949 804 93 8 0 chr5 47735681 47735799 -104801460 + B1_Mus1 SINE Alu 30 148 0 3 949 243 0 0 0 chr5 47735801 47735828 -104801431 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 949 1087 42 0 0 chr5 47735916 47736058 -104801201 - L1Md_A LINE L1 0 6582 6441 3 949 258 341 22 11 chr5 47736455 47736544 -104800715 + B1F2 SINE Alu 1 90 -59 3 949 710 143 0 8 chr5 47736724 47736858 -104800401 + GA-rich Low_complexity Low_complexity 1 133 0 3 949 448 65 13 13 chr5 47737003 47737081 -104800178 + (CAAAAA)n Simple_repeat Simple_repeat 2 79 0 3 949 651 221 0 0 chr5 47737774 47737914 -104799345 - Lx2 LINE L1 -1007 5990 5851 3 949 4536 148 72 5 chr5 47737940 47738875 -104798384 + Lx2 LINE L1 5917 7007 -1 3 949 44 46 0 0 chr5 47740089 47740154 -104797105 + AT_rich Low_complexity Low_complexity 1 65 0 3 949 538 329 95 8 chr5 47740800 47741056 -104796203 - Lx6 LINE L1 -26 7434 7179 3 949 290 315 0 0 chr5 47742490 47742563 -104794696 - Lx6 LINE L1 -123 7337 7265 3 949 427 231 196 13 chr5 47742585 47742743 -104794516 + Lx2B LINE L1 6811 6997 -3 3 949 477 287 13 13 chr5 47742737 47742896 -104794363 - Lx6 LINE L1 -182 7278 7120 3 949 3079 34 3 3 chr5 47743784 47744172 -104793087 + RLTR10 LTR ERVK 1 388 -2 3 949 4146 36 23 12 chr5 47744732 47745456 -104791803 - L1Md_F2 LINE L1 -480 6102 5376 3 949 369 117 0 0 chr5 47745614 47745674 -104791585 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 949 4193 106 48 22 chr5 47745699 47746368 -104790891 - Lx LINE L1 -6 6648 5963 3 949 642 245 20 25 chr5 47746372 47746569 -104790690 + ORR1D2 LTR MaLR 155 350 -20 3 949 28 29 0 0 chr5 47747247 47747282 -104789977 + AT_rich Low_complexity Low_complexity 1 35 0 3 949 26 50 0 0 chr5 47747861 47747901 -104789358 + AT_rich Low_complexity Low_complexity 1 40 0 3 949 333 272 0 9 chr5 47748964 47749079 -104788180 + (TA)n Simple_repeat Simple_repeat 2 115 0 3 949 22 0 0 0 chr5 47749381 47749403 -104787856 + AT_rich Low_complexity Low_complexity 1 22 0 3 949 381 223 0 0 chr5 47750688 47750782 -104786477 + (TA)n Simple_repeat Simple_repeat 1 94 0 3 949 21 0 0 0 chr5 47752025 47752046 -104785213 + AT_rich Low_complexity Low_complexity 1 21 0 3 949 600 213 0 66 chr5 47752193 47752329 -104784930 + B1_Mur4 SINE Alu 22 148 -2 3 949 1398 244 68 6 chr5 47752362 47752688 -104784571 - MTD LTR MaLR -34 385 40 3 949 380 327 39 39 chr5 47752717 47752873 -104784386 - B4A SINE B4 -123 169 14 3 949 21 36 0 0 chr5 47752930 47752958 -104784301 + AT_rich Low_complexity Low_complexity 1 28 0 3 949 22 0 0 0 chr5 47753343 47753365 -104783894 + AT_rich Low_complexity Low_complexity 1 22 0 3 949 2572 233 63 35 chr5 47753424 47753751 -104783508 + Lx7 LINE L1 5791 6118 -1578 3 949 299 85 0 21 chr5 47753751 47753799 -104783460 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3 949 2572 233 63 35 chr5 47753799 47754246 -104783013 + Lx7 LINE L1 6119 6587 -1109 3 949 2268 259 62 47 chr5 47754260 47754986 -104782273 + Lx7 LINE L1 6960 7696 0 3 949 1207 268 80 17 chr5 47755247 47755596 -104781663 + ORR1D1 LTR MaLR 3 373 -1 3 949 354 45 0 0 chr5 47756808 47756852 -104780407 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 949 339 119 0 0 chr5 47756852 47756919 -104780340 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 949 471 287 41 14 chr5 47757076 47757221 -104780038 - B1F SINE Alu 0 149 1 3 949 267 375 66 58 chr5 47757930 47758173 -104779086 - MLT1D LTR MaLR -258 247 3 3 949 253 339 169 76 chr5 47759508 47759757 -104777502 + MTE-int LTR MaLR 199 470 -1110 3 949 315 0 0 0 chr5 47760829 47760864 -104776395 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 949 351 0 0 0 chr5 47760864 47760902 -104776357 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 949 7832 128 23 17 chr5 47761987 47762814 -104774445 - Lx3B LINE L1 -103 6870 6044 3 949 609 69 0 0 chr5 47762814 47762901 -104774358 + (TCCC)n Simple_repeat Simple_repeat 2 88 0 3 949 7832 128 23 17 chr5 47762901 47763324 -104773935 - Lx3B LINE L1 -930 6043 5612 3 949 2673 84 0 3 chr5 47763324 47763671 -104773588 - ORR1A1 LTR MaLR 0 346 1 3 949 6238 81 1 2 chr5 47763671 47764521 -104772738 - ORR1A1-int LTR MaLR 0 1792 944 3 949 19524 107 14 1 chr5 47764537 47766792 -104770467 + L1_Mus1 LINE L1 2965 5233 -650 3 949 301 75 0 36 chr5 47766792 47766847 -104770412 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 949 19524 108 8 3 chr5 47766847 47768156 -104769103 + L1_Mus1 LINE L1 5234 6564 -3 3 949 186 43 0 0 chr5 47768184 47768207 -104769052 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 949 5011 105 4 0 chr5 47768227 47768963 -104768296 + L1_Mm LINE L1 3746 4484 -1399 3 949 651 60 10 0 chr5 47769096 47769196 -104768063 + L1Md_F2 LINE L1 6468 6568 -14 3 949 25 0 0 0 chr5 47769526 47769551 -104767708 + AT_rich Low_complexity Low_complexity 1 25 0 3 949 3493 216 117 16 chr5 47770510 47771356 -104765903 - Lx4B LINE L1 -3 7055 6125 3 949 1099 161 12 173 chr5 47771359 47771705 -104765554 + Lx4B LINE L1 5819 6108 -950 3 949 987 147 0 0 chr5 47771742 47772066 -104765193 + (CA)n Simple_repeat Simple_repeat 1 324 0 3 949 246 309 42 68 chr5 47772073 47772191 -104765068 - MLT1A LTR MaLR -226 148 34 3 949 1245 62 17 11 chr5 47772943 47773121 -104764138 + L1Md_F2 LINE L1 6393 6571 -11 3 949 1110 344 8 3 chr5 47773322 47773686 -104763573 + Lx6 LINE L1 7012 7377 -83 3 949 636 14 0 0 chr5 47775482 47775555 -104761704 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 949 242 344 61 69 chr5 47775660 47775791 -104761468 - MER20 DNA MER1_type -58 161 32 3 949 1089 266 119 3 chr5 47776168 47776462 -104760797 - ORR1D2 LTR MaLR -42 328 1 3 949 309 117 0 0 chr5 47776892 47776952 -104760307 + (T)n Simple_repeat Simple_repeat 1 60 0 3 949 349 315 121 31 chr5 47777558 47777884 -104759375 - MLT1C LTR MaLR -21 446 89 3 949 522 0 0 0 chr5 47777890 47777948 -104759311 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 949 635 264 13 111 chr5 47778229 47778463 -104758796 + MER102a DNA MER1_type 1 211 -119 3 949 446 283 149 46 chr5 47778682 47778923 -104758336 + B4 SINE B4 2 267 -25 3 949 366 317 36 164 chr5 47778910 47779185 -104758074 - ORR1D2 LTR MaLR -98 272 33 3 949 263 260 92 20 chr5 47780292 47780390 -104756869 + B1F SINE Alu 14 118 -31 3 949 210 147 0 0 chr5 47780397 47780431 -104756828 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 3 949 24 67 0 0 chr5 47780572 47780617 -104756642 + AT_rich Low_complexity Low_complexity 1 45 0 3 949 220 295 7 86 chr5 47781288 47781380 -104755879 + B1F SINE Alu 2 86 -31 3 949 204 353 54 73 chr5 47781869 47782074 -104755185 + MIR SINE MIR 36 236 -26 3 949 31 58 0 0 chr5 47782830 47782882 -104754377 + AT_rich Low_complexity Low_complexity 1 52 0 3 949 24 0 0 0 chr5 47782932 47782956 -104754303 + AT_rich Low_complexity Low_complexity 1 24 0 3 949 39 22 0 0 chr5 47783108 47783154 -104754105 + AT_rich Low_complexity Low_complexity 1 46 0 3 949 645 357 43 41 chr5 47783284 47783699 -104753560 - Zaphod DNA Tip100 -3594 437 22 3 949 3484 110 6 0 chr5 47783910 47784419 -104752840 + Lx3_Mus LINE L1 6498 7009 0 3 949 218 314 0 47 chr5 47785607 47785714 -104751545 + CT-rich Low_complexity Low_complexity 4 105 0 3 949 201 39 0 0 chr5 47787190 47787216 -104750043 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 949 198 133 0 0 chr5 47787240 47787270 -104749989 + L2 LINE L2 2434 2463 -956 4 949 282 309 45 18 chr5 47788693 47788805 -104748454 - MLT1D LTR MaLR -139 366 252 4 949 264 250 80 0 chr5 47789144 47789232 -104748027 + MER53 DNA hAT 83 177 -16 4 949 1310 264 8 18 chr5 47789303 47789685 -104747574 + RLTR14 LTR ERV1 3 380 -2 4 949 23 0 0 0 chr5 47789907 47789930 -104747329 + AT_rich Low_complexity Low_complexity 1 23 0 4 949 9006 136 17 3 chr5 47791735 47793412 -104743847 + Lx2A1 LINE L1 5309 7008 0 4 949 477 233 0 0 chr5 47793589 47793705 -104743554 + (TA)n Simple_repeat Simple_repeat 2 117 0 4 949 614 314 80 11 chr5 47793709 47794073 -104743186 + L1MA4A LINE L1 4892 5280 -863 4 949 1946 259 32 37 chr5 47794075 47794568 -104742691 + Lx7 LINE L1 6941 7441 -255 4 949 201 74 0 0 chr5 47794568 47794595 -104742664 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 949 1946 259 32 37 chr5 47794595 47794663 -104742596 + Lx7 LINE L1 7442 7499 -197 4 949 189 0 0 0 chr5 47794704 47794725 -104742534 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 4 949 4742 254 82 18 chr5 47794743 47796326 -104740933 - Lx7 LINE L1 -2 7458 5752 4 949 1798 31 9 4 chr5 47796326 47796553 -104740706 - L1Md_F2 LINE L1 -2 6580 6353 4 949 3921 211 94 19 chr5 47796553 47797489 -104739770 - Lx7 LINE L1 -1706 5754 4635 4 949 216 0 0 0 chr5 47797489 47797513 -104739746 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 949 1358 190 91 43 chr5 47797513 47797662 -104739597 - Lx7 LINE L1 -1246 4634 4470 4 949 1461 233 141 54 chr5 47797667 47798129 -104739130 - Lx7 LINE L1 -6958 770 269 4 949 402 259 67 22 chr5 47798118 47798252 -104739007 + Lx7 LINE L1 7556 7695 -1 4 949 434 367 0 0 chr5 47798464 47798592 -104738667 + ID_B1 SINE B4 89 216 -8 4 949 481 312 69 28 chr5 47798702 47798962 -104738297 + L1MA4A LINE L1 5522 5792 -511 4 949 297 0 0 0 chr5 47798962 47798995 -104738264 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 949 481 312 69 28 chr5 47798995 47799097 -104738162 + L1MA4A LINE L1 5793 5898 -405 4 949 221 310 40 40 chr5 47799218 47799292 -104737967 + ID4 SINE ID 4 77 -6 4 949 432 223 0 0 chr5 47799301 47799404 -104737855 + (TATATG)n Simple_repeat Simple_repeat 6 108 0 4 949 311 271 12 12 chr5 47799404 47799490 -104737769 + GA-rich Low_complexity Low_complexity 1 86 0 4 949 25 51 0 0 chr5 47799693 47799732 -104737527 + AT_rich Low_complexity Low_complexity 1 39 0 4 949 592 331 111 12 chr5 47799867 47800200 -104737059 - ORR1D2 LTR MaLR -4 366 1 4 949 342 0 0 0 chr5 47800307 47800345 -104736914 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 949 8259 178 37 4 chr5 47800347 47801956 -104735303 + L1_Mur2 LINE L1 4012 5673 -204 4 949 667 187 20 0 chr5 47801956 47802106 -104735153 + CT-rich Low_complexity Low_complexity 2 154 0 4 949 198 0 0 0 chr5 47802858 47802880 -104734379 + (TC)n Simple_repeat Simple_repeat 2 23 0 4 949 525 125 0 0 chr5 47802880 47802967 -104734292 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 949 470 316 9 0 chr5 47802967 47803081 -104734178 - RSINE1 SINE B4 -24 141 27 4 949 293 250 234 18 chr5 47803132 47803303 -104733956 - L1M3 LINE L1 -602 5578 5371 4 949 888 228 121 44 chr5 47803772 47803896 -104733363 - Lx9 LINE L1 -12 7632 7483 4 949 189 0 0 0 chr5 47803896 47803917 -104733342 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 949 888 228 121 44 chr5 47803917 47804132 -104733127 - Lx9 LINE L1 -162 7482 7268 4 949 232 154 0 37 chr5 47804734 47804788 -104732471 + T-rich Low_complexity Low_complexity 1 52 0 4 949 369 0 0 0 chr5 47804788 47804829 -104732430 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 949 213 65 0 0 chr5 47804829 47804859 -104732400 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 949 22 35 0 0 chr5 47805248 47805277 -104731982 + AT_rich Low_complexity Low_complexity 1 29 0 4 949 5335 125 26 29 chr5 47805285 47806144 -104731115 - Lx LINE L1 -7 6647 5792 4 949 19512 103 19 2 chr5 47806145 47809939 -104727320 + L1Md_F LINE L1 129 3989 -1894 4 949 458 108 14 0 chr5 47811476 47811550 -104725709 + (TTA)n Simple_repeat Simple_repeat 3 77 0 4 949 789 193 41 104 chr5 47812635 47812855 -104724404 + Lx7 LINE L1 7191 7396 -300 4 949 234 0 0 0 chr5 47812885 47812911 -104724348 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 949 22 70 0 0 chr5 47813073 47813116 -104724143 + AT_rich Low_complexity Low_complexity 1 43 0 4 949 261 274 27 129 chr5 47813196 47813343 -104723916 - L2c LINE L2 -255 3132 3001 4 949 241 357 8 0 chr5 47813797 47813926 -104723333 + CT-rich Low_complexity Low_complexity 4 133 0 4 949 394 339 85 16 chr5 47814619 47814808 -104722451 - MLT2B4 LTR ERVL -65 491 290 4 949 318 278 94 17 chr5 47816182 47816299 -104720960 + B3A SINE B2 10 135 -63 4 949 180 0 0 0 chr5 47816318 47816338 -104720921 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 949 288 111 0 0 chr5 47816607 47816652 -104720607 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 949 297 0 0 0 chr5 47817938 47817971 -104719288 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 949 215 222 0 22 chr5 47817976 47818022 -104719237 + GA-rich Low_complexity Low_complexity 1 45 0 4 949 21 36 0 0 chr5 47819167 47819195 -104718064 + AT_rich Low_complexity Low_complexity 1 28 0 4 949 387 0 0 0 chr5 47820315 47820358 -104716901 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 949 237 321 161 31 chr5 47821711 47821872 -104715387 + MLT1N2 LTR MaLR 24 205 -357 4 949 189 121 0 0 chr5 47822041 47822074 -104715185 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 949 968 78 0 0 chr5 47822084 47822213 -104715046 - B1_Mm SINE Alu 0 147 19 4 949 406 189 0 126 chr5 47822129 47822232 -104715027 - MT2B LTR ERVL -344 257 168 4 949 234 0 0 0 chr5 47823179 47823205 -104714054 + (T)n Simple_repeat Simple_repeat 1 26 0 4 949 235 221 19 57 chr5 47824329 47824378 -104712881 + A-rich Low_complexity Low_complexity 1 47 0 4 949 1137 82 7 0 chr5 47824378 47824525 -104712734 + B1_Mus1 SINE Alu 1 148 0 4 949 232 234 15 68 chr5 47824525 47824608 -104712651 + A-rich Low_complexity Low_complexity 48 126 0 4 949 452 172 0 32 chr5 47825463 47825589 -104711670 + (CA)n Simple_repeat Simple_repeat 1 122 0 4 949 1862 176 38 14 chr5 47827041 47827410 -104709849 + ORR1C1 LTR MaLR 1 378 0 4 949 432 354 102 34 chr5 47828348 47828614 -104708645 - B4A SINE B4 -2 290 7 4 949 1501 23 13 0 chr5 47828614 47828913 -104708346 + (TTC)n Simple_repeat Simple_repeat 1 302 0 4 949 423 0 0 0 chr5 47828913 47828994 -104708265 + (TC)n Simple_repeat Simple_repeat 1 81 0 4 949 293 47 23 0 chr5 47828994 47829037 -104708222 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4 949 341 278 0 10 chr5 47829037 47829054 -104708205 + polypyrimidine Low_complexity Low_complexity 3 19 0 4 949 480 326 131 24 chr5 47829274 47829572 -104707687 + MLT1D LTR MaLR 176 505 0 4 949 2066 95 0 13 chr5 47831080 47831380 -104705879 - L1Md_F2 LINE L1 -12 6570 6275 4 949 645 211 37 111 chr5 47832725 47832977 -104704282 - Lx7 LINE L1 -17 7679 7215 4 949 466 206 41 0 chr5 47832982 47833079 -104704180 + MTC LTR MaLR 6 106 -315 4 949 608 53 0 0 chr5 47833080 47833155 -104704104 - L1Md_F3 LINE L1 -123 6461 6387 4 949 979 190 30 30 chr5 47833173 47833374 -104703885 + MTC LTR MaLR 105 305 -116 4 949 3337 179 109 68 chr5 47833375 47834273 -104702986 - L1_Mur3 LINE L1 -319 5561 4627 4 949 202 346 0 23 chr5 47834479 47834612 -104702647 + CT-rich Low_complexity Low_complexity 4 133 0 4 949 2326 234 44 25 chr5 47835074 47835691 -104701568 + Lx2B LINE L1 6344 6997 0 4 949 405 0 0 0 chr5 47836262 47836307 -104700952 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 949 337 324 51 90 chr5 47836424 47836580 -104700679 - B4A SINE B4 -140 152 3 4 949 951 228 80 75 chr5 47836968 47837429 -104699830 - RLTR20C LTR ERVK 0 551 12 4 949 225 268 41 27 chr5 47839057 47839130 -104698129 - LTR48 LTR ERV1 -713 74 1 4 949 261 119 0 0 chr5 47839138 47839180 -104698079 + (T)n Simple_repeat Simple_repeat 1 42 0 4 949 863 28 0 0 chr5 47839182 47839288 -104697971 - B1_Mm SINE Alu 0 147 42 4 949 299 341 75 36 chr5 47839368 47839700 -104697559 - L1MC1 LINE L1 -57 6276 5932 4 949 432 0 0 0 chr5 47839745 47839793 -104697466 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 949 479 281 14 54 chr5 47839810 47839957 -104697302 - B3 SINE B2 -75 141 1 4 949 371 131 0 0 chr5 47840057 47840118 -104697141 - L1_Mus2 LINE L1 0 6566 6506 4 949 1608 32 32 14 chr5 47840383 47840601 -104696658 + L1Md_F2 LINE L1 6358 6579 -3 4 949 24 53 0 0 chr5 47840635 47840673 -104696586 + AT_rich Low_complexity Low_complexity 1 38 0 4 949 2019 162 59 0 chr5 47840684 47841055 -104696204 + Lx2 LINE L1 6603 6995 -2 4 118 1077 309 68 27 chr5 47841058 47841792 -104695467 + L1MA9 LINE L1 5317 6080 -232 4 950 293 172 16 0 chr5 47841875 47841939 -104695320 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 950 270 0 0 0 chr5 47841991 47842021 -104695238 + (TGG)n Simple_repeat Simple_repeat 3 32 0 4 950 351 0 0 0 chr5 47842348 47842387 -104694872 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 950 738 327 70 21 chr5 47843792 47844079 -104693180 - ORR1D2 LTR MaLR -6 364 64 4 950 699 287 68 8 chr5 47844126 47844383 -104692876 + MLT1A0 LTR MaLR 91 406 -2 4 950 197 132 26 0 chr5 47846109 47846147 -104691112 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 4 950 420 322 87 37 chr5 47847020 47847375 -104689884 + L2 LINE L2 1846 2218 -1201 4 950 375 136 18 35 chr5 47847403 47847517 -104689742 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 950 680 98 27 0 chr5 47847758 47847870 -104689389 - Lx2 LINE L1 0 6997 6883 4 950 273 155 40 20 chr5 47850906 47851005 -104686254 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 4 950 234 62 0 0 chr5 47851007 47851039 -104686220 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 950 369 305 31 49 chr5 47852338 47852500 -104684759 + Lx9 LINE L1 7017 7175 -469 4 950 26 50 0 0 chr5 47854613 47854653 -104682606 + AT_rich Low_complexity Low_complexity 1 40 0 5 950 23 101 0 0 chr5 47854874 47854953 -104682306 + AT_rich Low_complexity Low_complexity 1 79 0 5 950 291 359 8 8 chr5 47855068 47855186 -104682073 + Lx8 LINE L1 7203 7320 -153 5 950 233 75 25 0 chr5 47855455 47855495 -104681764 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 5 950 586 254 19 63 chr5 47855790 47855996 -104681263 - B3A SINE B2 0 198 2 5 950 2267 88 180 3 chr5 47857583 47857938 -104679321 - BGLII LTR ERVK 0 421 4 5 950 777 31 0 0 chr5 47857938 47858034 -104679225 + (TG)n Simple_repeat Simple_repeat 2 97 0 5 950 356 311 0 11 chr5 47858040 47858131 -104679128 + MTEa LTR MaLR 22 111 -268 5 950 2045 169 47 6 chr5 47858135 47858499 -104678760 - ORR1C2 LTR MaLR -5 379 1 5 950 426 278 38 45 chr5 47858548 47858631 -104678628 + MTEa LTR MaLR 249 331 -48 5 950 3655 55 78 2 chr5 47858631 47859107 -104678152 - RLTR1B LTR ERV1 0 512 1 5 950 426 278 38 45 chr5 47859107 47859155 -104678104 + MTEa LTR MaLR 332 379 0 5 950 484 232 54 0 chr5 47859415 47859527 -104677732 + MTD LTR MaLR 1 118 -301 5 950 195 100 0 0 chr5 47859527 47859557 -104677702 + (ATTG)n Simple_repeat Simple_repeat 2 31 0 5 950 1187 209 17 20 chr5 47859558 47859818 -104677441 + MTD LTR MaLR 158 403 -16 5 950 471 78 0 0 chr5 47860100 47860164 -104677095 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 950 247 282 0 0 chr5 47860518 47860589 -104676670 + A-rich Low_complexity Low_complexity 1 71 0 5 950 27 29 0 0 chr5 47862834 47862868 -104674391 + AT_rich Low_complexity Low_complexity 1 34 0 5 950 1598 118 27 15 chr5 47862881 47863140 -104674119 - Lx3_Mus LINE L1 -6 7003 6742 5 950 185 364 62 18 chr5 47864996 47865108 -104672151 + MIRb SINE MIR 22 138 -130 5 950 567 173 0 0 chr5 47865954 47866064 -104671195 + (TA)n Simple_repeat Simple_repeat 2 111 0 5 950 224 385 73 7 chr5 47866978 47867114 -104670145 + MIR3 SINE MIR 19 163 -45 5 950 494 379 6 24 chr5 47868768 47868933 -104668326 - RSINE1 SINE B4 -1 164 3 5 950 313 268 37 0 chr5 47870230 47870312 -104666947 + MER20 DNA MER1_type 3 87 -132 5 950 222 37 0 0 chr5 47870583 47870610 -104666649 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 950 626 98 0 0 chr5 47870658 47870760 -104666499 + L1Md_F3 LINE L1 6483 6584 0 5 950 340 281 33 22 chr5 47871034 47871216 -104666043 - L1M5 LINE L1 -321 5803 5620 5 950 243 161 31 31 chr5 47872686 47872750 -104664509 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 950 519 337 29 44 chr5 47872775 47872980 -104664279 + B4 SINE B4 6 207 -85 5 950 516 112 32 8 chr5 47872981 47873107 -104664152 + L1_Mus4 LINE L1 6504 6632 -4 5 950 423 365 53 33 chr5 47873107 47873257 -104664002 + B3A SINE B2 29 181 -17 5 950 201 39 0 0 chr5 47873259 47873285 -104663974 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 950 248 271 157 9 chr5 47873471 47873579 -104663680 + Lx8 LINE L1 7160 7283 -190 5 950 466 253 19 73 chr5 47873752 47873835 -104663424 + RMER17C LTR ERVK 1 83 -327 5 950 772 68 30 8 chr5 47873835 47873969 -104663290 + (TC)n Simple_repeat Simple_repeat 2 138 0 5 950 466 268 30 64 chr5 47873969 47874194 -104663065 + RMER17C LTR ERVK 84 364 -46 5 950 1029 288 96 20 chr5 47874246 47874590 -104662669 - ORR1D2 LTR MaLR 0 370 1 5 950 225 119 0 0 chr5 47874952 47874994 -104662265 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 5 950 547 302 58 65 chr5 47875011 47875305 -104661954 + MLT1D LTR MaLR 191 482 -23 5 950 230 305 57 41 chr5 47876239 47876362 -104660897 - MLT1H LTR MaLR 0 489 365 5 950 1172 269 43 71 chr5 47876530 47876695 -104660564 + MTD LTR MaLR 62 232 -187 5 950 707 55 248 0 chr5 47876695 47876804 -104660455 + B1_Mus1 SINE Alu 1 136 -12 5 950 459 0 0 0 chr5 47876804 47876855 -104660404 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 5 950 1172 269 43 71 chr5 47876855 47877056 -104660203 + MTD LTR MaLR 233 418 -1 5 950 4062 137 25 112 chr5 47877072 47878064 -104659195 - RMER17A2 LTR ERVK 0 906 1 5 950 232 341 33 33 chr5 47878105 47878196 -104659063 - MLT1H LTR MaLR -337 212 122 5 950 450 212 0 0 chr5 47878276 47878375 -104658884 + (CA)n Simple_repeat Simple_repeat 2 100 0 5 950 1105 250 13 4 chr5 47878443 47878676 -104658583 + Lx6 LINE L1 7054 7288 -172 5 950 23 0 0 0 chr5 47878689 47878712 -104658547 + AT_rich Low_complexity Low_complexity 1 23 0 5 950 4714 141 43 40 chr5 47879164 47880057 -104657202 - RMER17A2 LTR ERVK -11 895 1 5 950 216 197 0 43 chr5 47880162 47880231 -104657028 + (TAA)n Simple_repeat Simple_repeat 2 67 0 5 950 329 366 36 0 chr5 47880516 47880628 -104656631 + B4A SINE B4 8 123 -169 5 950 396 0 0 0 chr5 47880852 47880896 -104656363 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 950 1076 160 10 0 chr5 47880913 47881113 -104656146 + Lx5 LINE L1 2873 3074 -2803 5 950 10733 207 36 24 chr5 47881110 47884716 -104652543 + Lx5 LINE L1 3377 7050 0 5 950 522 294 122 21 chr5 47884732 47884920 -104652339 + B3 SINE B2 10 216 0 5 950 345 315 29 53 chr5 47887032 47887231 -104650028 - B3 SINE B2 -10 206 11 5 950 23 54 0 0 chr5 47887279 47887316 -104649943 + AT_rich Low_complexity Low_complexity 1 37 0 5 950 1020 101 0 0 chr5 47888162 47888340 -104648919 + (TTC)n Simple_repeat Simple_repeat 1 178 0 5 950 934 120 6 22 chr5 47888340 47888519 -104648740 + (TCC)n Simple_repeat Simple_repeat 3 178 0 5 950 447 35 0 0 chr5 47888556 47888613 -104648646 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 950 273 29 0 0 chr5 47888613 47888646 -104648613 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 950 254 365 48 0 chr5 47888858 47888962 -104648297 + MER5A DNA MER1_type 25 133 -56 5 950 224 371 0 6 chr5 47889660 47889756 -104647503 + L2a LINE L2 3279 3422 -4 5 950 24 0 0 0 chr5 47889759 47889783 -104647476 + AT_rich Low_complexity Low_complexity 1 24 0 5 950 544 308 83 23 chr5 47890048 47890314 -104646945 + MER45B DNA Tip100 253 534 -506 5 950 281 236 100 0 chr5 47890444 47890554 -104646705 + MER45B DNA Tip100 776 896 -144 5 950 778 129 75 15 chr5 47890605 47890739 -104646520 - B1_Mus2 SINE Alu -5 142 1 5 950 7301 63 45 1 chr5 47890752 47891922 -104645337 - L1Md_F2 LINE L1 0 6582 5374 5 950 250 103 0 0 chr5 47891918 47891957 -104645302 + L1Md_Gf LINE L1 986 1024 -5498 5 950 486 0 0 0 chr5 47894882 47894936 -104642323 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 950 664 118 29 7 chr5 47895087 47895224 -104642035 + (TA)n Simple_repeat Simple_repeat 1 140 0 5 950 304 102 28 28 chr5 47895225 47895296 -104641963 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 5 950 210 71 0 0 chr5 47895644 47895672 -104641587 + (TATG)n Simple_repeat Simple_repeat 2 29 0 5 950 483 287 8 0 chr5 47895713 47895835 -104641424 + B3A SINE B2 38 160 -38 5 950 475 280 48 42 chr5 47896383 47896551 -104640708 - MTC-int LTR MaLR 0 1258 1090 5 950 731 104 0 9 chr5 47897527 47897643 -104639616 + (TTTTC)n Simple_repeat Simple_repeat 2 116 0 5 950 197 178 0 22 chr5 47897861 47897907 -104639352 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 950 186 43 0 0 chr5 47898564 47898587 -104638672 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 950 429 36 0 0 chr5 47898587 47898641 -104638618 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 950 539 29 0 14 chr5 47898810 47898880 -104638379 + (GA)n Simple_repeat Simple_repeat 2 70 0 5 950 250 250 80 14 chr5 47900682 47900820 -104636439 - RMER17D2 LTR ERVK -272 537 391 5 950 399 361 0 6 chr5 47902574 47902755 -104634504 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 950 569 384 7 62 chr5 47902794 47903083 -104634176 - B4A SINE B4 -17 275 3 5 950 257 308 99 36 chr5 47903083 47903182 -104634077 - Tigger5 DNA MER2_type -2211 195 90 5 950 2804 120 16 11 chr5 47904058 47904083 -104633176 - Lx3_Mus LINE L1 -5 7004 6981 5 950 504 0 0 0 chr5 47904083 47904139 -104633120 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 5 950 2804 120 16 11 chr5 47904139 47904559 -104632700 - Lx3_Mus LINE L1 -29 6980 6557 5 950 839 281 101 23 chr5 47904850 47905196 -104632063 + MTD LTR MaLR 26 398 -21 5 950 4585 139 2 3 chr5 47907225 47908077 -104629182 - Lx LINE L1 -728 5926 5076 5 950 1423 120 5 5 chr5 47908065 47908275 -104628984 + Lx LINE L1 5937 6146 -508 5 950 2081 32 0 8 chr5 47908275 47908528 -104628731 + L1Md_F2 LINE L1 6317 6567 -15 5 950 3100 128 30 8 chr5 47908536 47909039 -104628220 + Lx LINE L1 6141 6654 0 5 950 1703 178 30 102 chr5 47909039 47909497 -104627762 - RMER19B LTR ERVK -241 661 77 5 950 560 176 6 67 chr5 47910038 47910187 -104627072 + B1_Mur2 SINE Alu 11 149 0 5 950 306 347 19 22 chr5 47910226 47910394 -104626865 - MLT1B LTR MaLR 0 467 284 5 950 443 285 130 13 chr5 47910463 47910694 -104626565 - Lx8 LINE L1 -3 7470 7213 5 950 307 296 16 73 chr5 47911398 47911522 -104625737 - MLT1B LTR MaLR -217 173 57 5 950 452 327 26 0 chr5 47911645 47911801 -104625458 - MLT1A LTR MaLR -212 162 3 5 950 22 56 0 0 chr5 47912065 47912101 -104625158 + AT_rich Low_complexity Low_complexity 1 36 0 5 950 225 294 53 105 chr5 47913571 47913723 -104623536 - MIRc SINE MIR -3 265 122 5 950 346 365 0 42 chr5 47914217 47914337 -104622922 + ORR1E LTR MaLR 7 121 -238 5 950 411 0 33 17 chr5 47915024 47915084 -104622175 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 5 950 450 79 0 0 chr5 47915698 47915761 -104621498 + (CATA)n Simple_repeat Simple_repeat 4 66 0 5 950 22 0 0 0 chr5 47916654 47916676 -104620583 + AT_rich Low_complexity Low_complexity 1 22 0 5 950 272 282 64 0 chr5 47917185 47917263 -104619996 - PB1D10 SINE Alu -27 90 8 5 950 253 312 54 0 chr5 47917263 47917274 -104619985 - ID_B1 SINE B4 -49 171 78 5 950 793 149 31 14 chr5 47917366 47917520 -104619739 + L1Md_F3 LINE L1 6033 6191 -393 5 950 29 60 0 0 chr5 47917581 47917631 -104619628 + AT_rich Low_complexity Low_complexity 1 50 0 5 950 570 288 21 32 chr5 47919627 47919773 -104617486 + Lx9 LINE L1 7168 7311 -333 5 950 357 24 0 0 chr5 47919773 47919815 -104617444 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 950 570 288 21 32 chr5 47919815 47919858 -104617401 + Lx9 LINE L1 7312 7355 -289 5 950 31681 101 8 6 chr5 47919843 47925219 -104612040 + L1Md_F2 LINE L1 201 5586 -297 5 950 7730 62 3 0 chr5 47925219 47926200 -104611059 + L1Md_F2 LINE L1 5587 6570 -12 5 950 536 272 92 32 chr5 47926203 47926396 -104610863 + Lx9 LINE L1 7340 7549 -95 6 950 2370 191 99 53 chr5 47926396 47927054 -104610205 + RMER6C LTR ERVK 1 688 -2 6 950 536 272 92 32 chr5 47927054 47927141 -104610118 + Lx9 LINE L1 7550 7637 -7 6 950 33 43 0 0 chr5 47927680 47927727 -104609532 + AT_rich Low_complexity Low_complexity 1 47 0 6 950 589 222 16 30 chr5 47927728 47927864 -104609395 + B1_Mm SINE Alu 1 127 -21 6 950 234 62 0 0 chr5 47929638 47929670 -104607589 + (A)n Simple_repeat Simple_repeat 1 32 0 6 950 315 320 0 93 chr5 47930546 47930653 -104606606 + B3A SINE B2 87 183 -15 6 950 44 63 0 0 chr5 47930655 47930734 -104606525 + AT_rich Low_complexity Low_complexity 1 79 0 6 950 1382 102 0 0 chr5 47930734 47930939 -104606320 - Lx3_Mus LINE L1 0 7009 6805 6 950 3933 72 2 0 chr5 47930940 47931579 -104605680 + Lx3_Mus LINE L1 5389 6028 -981 6 950 202 147 29 0 chr5 47931619 47931687 -104605572 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 950 39 92 0 0 chr5 47931696 47931805 -104605454 + AT_rich Low_complexity Low_complexity 1 109 0 6 950 1483 219 25 33 chr5 47932231 47932550 -104604709 - MTC LTR MaLR 0 421 64 6 950 985 95 81 0 chr5 47933407 47933555 -104603704 - B2_Mm2 SINE B2 -35 160 1 6 950 594 0 0 0 chr5 47934317 47934383 -104602876 + (TA)n Simple_repeat Simple_repeat 1 66 0 6 950 1908 215 12 15 chr5 47934387 47934793 -104602466 + MTB_Mm LTR MaLR 1 405 -2 6 950 213 274 16 16 chr5 47935719 47935782 -104601477 + CT-rich Low_complexity Low_complexity 1 63 0 6 950 2183 96 26 0 chr5 47935851 47936163 -104601096 - ORR1A2 LTR MaLR -7 320 1 6 950 540 0 0 0 chr5 47936165 47936225 -104601034 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 950 3873 142 71 42 chr5 47939296 47939661 -104597598 - RMER17D2 LTR ERVK 0 809 465 6 950 723 88 0 0 chr5 47939661 47939774 -104597485 + (GA)n Simple_repeat Simple_repeat 2 114 0 6 950 3873 142 71 42 chr5 47939774 47940194 -104597065 - RMER17D2 LTR ERVK -345 464 1 6 950 25 31 0 0 chr5 47940300 47940332 -104596927 + AT_rich Low_complexity Low_complexity 1 32 0 6 950 652 278 35 78 chr5 47940646 47940876 -104596383 - MTE2a LTR MaLR -34 345 126 6 950 1617 265 75 23 chr5 47941597 47942158 -104595101 + Lx9 LINE L1 7032 7621 -23 6 950 212 372 19 45 chr5 47942273 47942428 -104594831 + L2a LINE L2 2235 2385 -1034 6 950 208 323 121 12 chr5 47943245 47943411 -104593848 + L2a LINE L2 3199 3382 -44 6 950 314 131 0 32 chr5 47943942 47944005 -104593254 + CT-rich Low_complexity Low_complexity 1 61 0 6 950 917 318 40 22 chr5 47945279 47945552 -104591707 - MTE2b LTR MaLR -39 340 63 6 950 515 302 36 0 chr5 47946129 47946321 -104590938 - B3 SINE B2 -13 203 5 6 950 2397 127 2 101 chr5 47946340 47946797 -104590462 - Lx2 LINE L1 0 6997 6586 6 950 24 0 0 0 chr5 47947614 47947638 -104589621 + AT_rich Low_complexity Low_complexity 1 24 0 6 950 1952 316 31 27 chr5 47949586 47950413 -104586846 - Lx8 LINE L1 -352 7121 6291 6 950 229 373 0 0 chr5 47950670 47950745 -104586514 + ID4_ SINE ID 2 76 -7 6 950 7340 93 28 23 chr5 47951341 47952463 -104584796 - Lx3_Mus LINE L1 0 7009 5883 6 950 22 35 0 0 chr5 47953035 47953064 -104584195 + AT_rich Low_complexity Low_complexity 1 29 0 6 950 2659 47 3 0 chr5 47953771 47954109 -104583150 + ORR1A0 LTR MaLR 1 339 -7 6 950 477 0 0 0 chr5 47955351 47955404 -104581855 + (TC)n Simple_repeat Simple_repeat 1 53 0 6 950 252 0 0 0 chr5 47955404 47955431 -104581828 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 950 373 381 84 21 chr5 47957217 47957359 -104579900 + RSINE1 SINE B4 2 152 -13 6 950 21 0 0 0 chr5 47957399 47957420 -104579839 + AT_rich Low_complexity Low_complexity 1 21 0 6 950 22 56 0 0 chr5 47957642 47957678 -104579581 + AT_rich Low_complexity Low_complexity 1 36 0 6 950 231 179 0 67 chr5 47958179 47958239 -104579020 + MER67B LTR ERV1 442 497 -164 6 950 2022 166 70 11 chr5 47958258 47958630 -104578629 + ORR1B1 LTR MaLR 1 394 0 6 950 744 375 4 34 chr5 47959088 47959356 -104577903 - B4A SINE B4 -16 276 17 6 950 477 0 0 0 chr5 47959357 47959410 -104577849 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 950 444 37 0 0 chr5 47959430 47959484 -104577775 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 950 391 331 103 0 chr5 47960370 47960554 -104576705 - B3 SINE B2 -13 203 1 6 950 188 67 0 32 chr5 47961063 47961094 -104576165 + (AGGGGG)n Simple_repeat Simple_repeat 1 30 0 6 950 965 122 0 12 chr5 47961094 47961260 -104575999 + (GAGAA)n Simple_repeat Simple_repeat 1 164 0 6 950 192 40 0 0 chr5 47961434 47961459 -104575800 + (TTG)n Simple_repeat Simple_repeat 2 26 0 6 950 5196 155 59 28 chr5 47963027 47964021 -104573238 - Lx3C LINE L1 -4 6972 5948 6 950 32369 106 16 35 chr5 47964021 47970736 -104566523 - L1Md_F2 LINE L1 0 6582 1 6 950 1069 141 11 0 chr5 47970729 47970906 -104566353 - Lx3C LINE L1 -1009 5964 5786 6 118 22264 138 19 20 chr5 47970914 47972788 -104564471 - L1_Mus4 LINE L1 0 6636 4738 6 951 216 0 0 0 chr5 47972788 47972812 -104564447 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 951 22264 172 26 42 chr5 47972812 47972900 -104564359 - L1_Mus4 LINE L1 -1146 4737 4645 6 951 188 35 35 0 chr5 47972900 47972929 -104564330 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 6 951 225 0 0 0 chr5 47972929 47972953 -104564306 + (GTTTG)n Simple_repeat Simple_repeat 1 25 0 6 951 22264 172 26 42 chr5 47972953 47974121 -104563138 - L1_Mus4 LINE L1 -1239 4644 3477 6 951 477 62 0 0 chr5 47974121 47974186 -104563073 + (TTTG)n Simple_repeat Simple_repeat 4 68 0 6 951 22264 172 26 42 chr5 47974186 47976083 -104561176 - L1_Mus4 LINE L1 -2407 3476 1694 6 951 279 0 0 0 chr5 47976083 47976114 -104561145 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 951 22264 180 30 25 chr5 47976114 47977199 -104560060 - L1_Mus4 LINE L1 -4190 1693 581 6 951 2568 139 3 3 chr5 47977203 47977593 -104559666 - Lx3C LINE L1 -86 5800 5411 6 951 4636 165 44 22 chr5 47977597 47978568 -104558691 - Lx3C LINE L1 -1041 4845 3853 6 951 2940 138 18 2 chr5 47978554 47979069 -104558190 + Lx3C LINE L1 3368 3890 -1996 6 951 2146 75 0 0 chr5 47979075 47979354 -104557905 + L1_Mus1 LINE L1 6289 6567 0 6 951 248 401 34 34 chr5 47979922 47980069 -104557190 + MLT1F2 LTR MaLR 350 496 -64 6 951 2608 99 16 68 chr5 47980274 47980718 -104556541 - BGLII LTR ERVK 0 421 1 6 951 363 323 0 0 chr5 47980718 47980811 -104556448 - Lx8 LINE L1 -206 7267 7175 6 951 677 53 44 0 chr5 47981048 47981162 -104556097 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 6 951 663 267 36 29 chr5 47981216 47981490 -104555769 - Lx9 LINE L1 -127 7517 7242 6 951 266 135 47 19 chr5 47981774 47981880 -104555379 + (TA)n Simple_repeat Simple_repeat 2 110 0 6 951 23 0 0 0 chr5 47981880 47981903 -104555356 + AT_rich Low_complexity Low_complexity 1 23 0 6 951 226 348 42 24 chr5 47981989 47982157 -104555102 + MLT1D LTR MaLR 63 233 -272 6 951 327 331 54 14 chr5 47982190 47982337 -104554922 + MLT1D LTR MaLR 344 496 -9 6 951 1911 296 43 57 chr5 47982584 47983753 -104553506 + RMER1B Other Other 26 889 -177 6 951 29 0 0 0 chr5 47983904 47983933 -104553326 + AT_rich Low_complexity Low_complexity 1 29 0 6 951 262 213 21 141 chr5 47983933 47984075 -104553184 + RMER1C Other Other 1217 1341 -1 6 951 30 0 0 0 chr5 47984180 47984210 -104553049 + AT_rich Low_complexity Low_complexity 1 30 0 6 951 303 333 110 41 chr5 47984222 47984513 -104552746 - L1MC LINE L1 -2105 4041 3731 6 951 1082 299 115 9 chr5 47984519 47984885 -104552374 - MTD LTR MaLR 0 419 6 6 951 326 306 145 10 chr5 47984930 47985227 -104552032 - L1MD LINE L1 -2464 3682 3346 6 951 251 252 46 30 chr5 47985259 47985390 -104551869 - L1MB8 LINE L1 -2 6567 6435 6 951 369 0 0 0 chr5 47985475 47985516 -104551743 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 951 25 65 0 0 chr5 47985596 47985642 -104551617 + AT_rich Low_complexity Low_complexity 1 46 0 6 951 182 118 29 0 chr5 47985798 47985832 -104551427 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 951 316 299 178 0 chr5 47985994 47986151 -104551108 - L1MB8 LINE L1 -395 6180 5996 6 951 1304 259 142 27 chr5 47986168 47986295 -104550964 + Lx9 LINE L1 7056 7177 -467 6 951 342 0 0 0 chr5 47986295 47986333 -104550926 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 951 1304 259 142 27 chr5 47986333 47986607 -104550652 + Lx9 LINE L1 7178 7524 -120 6 951 183 80 0 0 chr5 47986607 47986632 -104550627 + (CAA)n Simple_repeat Simple_repeat 3 27 0 6 951 1304 259 142 27 chr5 47986632 47986756 -104550503 + Lx9 LINE L1 7525 7643 -1 6 951 301 338 108 6 chr5 47986826 47986984 -104550275 - L1MB8 LINE L1 -655 5910 5737 6 951 291 272 60 17 chr5 47987647 47987763 -104549496 - L1MB8 LINE L1 -1569 4968 4848 6 951 2555 237 86 16 chr5 47987784 47988695 -104548564 + Lx7 LINE L1 3038 4011 -1869 6 951 2319 238 19 87 chr5 47988700 47989387 -104547872 + RMER6C LTR ERVK 51 690 0 6 951 7329 234 50 12 chr5 47989388 47992521 -104544738 + Lx7 LINE L1 4055 7320 -376 6 951 1388 198 43 31 chr5 47992538 47992861 -104544398 + MERVL_2A-int LTR ERVL 5299 5625 -136 6 951 1151 84 0 0 chr5 47992877 47993032 -104544227 - L1_Mus1 LINE L1 0 6567 6413 6 951 2450 61 3 3 chr5 47993033 47993347 -104543912 + L1_Mus1 LINE L1 6101 6414 -153 6 951 1268 217 35 51 chr5 47993346 47993740 -104543519 + Lx7 LINE L1 7308 7695 -1 6 951 376 303 93 62 chr5 47993779 47994348 -104542911 - L1MB8 LINE L1 -1720 4817 4231 6 951 420 169 0 0 chr5 47994361 47994438 -104542821 + (TA)n Simple_repeat Simple_repeat 2 78 0 6 951 24 53 0 0 chr5 47994442 47994480 -104542779 + AT_rich Low_complexity Low_complexity 1 38 0 6 951 238 301 68 0 chr5 47994539 47994642 -104542617 - L1MB8 LINE L1 -4844 1789 1680 6 951 198 0 0 0 chr5 47994712 47994734 -104542525 + (TC)n Simple_repeat Simple_repeat 2 23 0 6 951 295 60 40 0 chr5 47994734 47994783 -104542476 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 951 197 31 94 0 chr5 47995129 47995161 -104542098 + (ATATG)n Simple_repeat Simple_repeat 3 37 0 6 951 234 0 0 0 chr5 47995257 47995283 -104541976 + (TTATA)n Simple_repeat Simple_repeat 3 28 0 6 951 1910 174 85 6 chr5 47995420 47995785 -104541474 - ORR1B1 LTR MaLR 0 394 1 6 951 270 0 0 0 chr5 47995804 47995834 -104541425 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 951 3295 253 72 98 chr5 47995849 47997023 -104540236 - ORR1B1-int LTR MaLR -226 1144 1 6 951 2136 145 78 0 chr5 47997027 47997385 -104539874 - ORR1B1 LTR MaLR -8 386 1 6 951 747 297 118 29 chr5 47998186 47998526 -104538733 - ORR1D2 LTR MaLR 0 370 1 6 951 710 276 18 57 chr5 47998850 47999077 -104538182 - Lx5 LINE L1 -11 7039 6822 6 951 959 107 8 0 chr5 47999077 47999208 -104538051 + B1_Mus1 SINE Alu 1 132 -16 6 951 615 117 0 0 chr5 47999217 47999311 -104537948 + (GGGA)n Simple_repeat Simple_repeat 3 96 0 6 951 1432 11 23 0 chr5 47999311 47999487 -104537772 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 951 1350 201 100 75 chr5 47999493 47999842 -104537417 - Lx5 LINE L1 -235 6815 6458 6 951 993 138 19 0 chr5 47999840 48000000 -104537259 - Lx5 LINE L1 -608 6046 5884 6 951 4432 169 8 3 chr5 48000000 48000784 -104536475 - L1_Mm LINE L1 0 5883 5096 1 951 272 122 0 0 chr5 48000772 48000813 -104536446 - L1_Mm LINE L1 -464 5419 5379 2 951 408 129 0 0 chr5 48000811 48000873 -104536386 + L1_Mm LINE L1 4839 4900 -983 3 951 274 196 0 0 chr5 48000880 48000936 -104536323 + L1_Mm LINE L1 5223 5278 -605 3 951 706 274 25 54 chr5 48000940 48001244 -104536015 + MT2B LTR ERVL 96 551 -50 4 951 357 24 0 0 chr5 48001244 48001286 -104535973 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 951 290 269 48 38 chr5 48001288 48001497 -104535762 - RMER17D2 LTR ERVK -358 451 241 6 951 237 217 0 0 chr5 48001456 48001502 -104535757 + MLT2C2 LTR ERVL 514 559 0 7 951 22 56 0 0 chr5 48001505 48001541 -104535718 + AT_rich Low_complexity Low_complexity 1 36 0 8 951 21 57 0 0 chr5 48002246 48002281 -104534978 + AT_rich Low_complexity Low_complexity 1 35 0 9 951 263 363 24 16 chr5 48003365 48003491 -104533768 + Charlie4z DNA MER1_type 6 132 -35 1 951 207 330 66 25 chr5 48003609 48003730 -104533529 - MIRm SINE MIR -121 155 30 1 951 664 140 67 43 chr5 48004823 48004987 -104532272 - Lx9 LINE L1 -5 7639 7472 1 951 207 211 0 0 chr5 48004996 48005034 -104532225 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 1 951 2323 230 96 11 chr5 48005040 48005126 -104532133 - Lx9 LINE L1 -127 7517 7422 1 951 492 72 0 0 chr5 48005126 48005195 -104532064 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 951 2323 230 96 11 chr5 48005195 48005776 -104531483 - Lx9 LINE L1 -223 7421 6794 1 951 189 74 0 0 chr5 48005786 48005813 -104531446 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 1 951 942 362 26 9 chr5 48005844 48006271 -104530988 + Tigger7 DNA MER2_type 4 437 -2054 1 951 441 0 0 0 chr5 48006754 48006803 -104530456 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 951 585 328 32 0 chr5 48009980 48010169 -104527090 + ID_B1 SINE B4 3 197 -27 1 951 759 78 0 0 chr5 48010242 48010345 -104526914 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 2 951 448 66 26 0 chr5 48010352 48010428 -104526831 - L1_Mus2 LINE L1 -1 6565 6488 2 951 261 0 0 0 chr5 48010561 48010590 -104526669 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 2 951 2094 90 42 36 chr5 48010594 48010929 -104526330 - L1_Mus2 LINE L1 -5 6561 6225 2 951 357 48 0 0 chr5 48011254 48011296 -104525963 - SSU-rRNA_Hsa rRNA rRNA -482 1387 1346 2 951 267 357 119 47 chr5 48011317 48011798 -104525461 + L2c LINE L2 2593 3114 -273 2 951 627 163 0 0 chr5 48013472 48013595 -104523664 + CT-rich Low_complexity Low_complexity 3 125 0 2 951 222 118 0 0 chr5 48014739 48014773 -104522486 + (TCC)n Simple_repeat Simple_repeat 3 36 0 2 951 228 289 124 31 chr5 48014813 48014974 -104522285 + L2c LINE L2 3232 3407 -19 2 951 22 0 0 0 chr5 48015021 48015043 -104522216 + AT_rich Low_complexity Low_complexity 1 22 0 2 951 548 361 0 19 chr5 48015532 48015690 -104521569 - RSINE1 SINE B4 -6 159 5 2 951 21 57 0 0 chr5 48016700 48016735 -104520524 + AT_rich Low_complexity Low_complexity 1 35 0 3 951 231 204 80 0 chr5 48017387 48017475 -104519784 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 3 951 2640 107 5 37 chr5 48017569 48017997 -104519262 - Lx3B LINE L1 -796 6177 5764 3 951 4433 158 29 0 chr5 48017997 48018762 -104518497 + Lx3B LINE L1 6183 6969 -4 3 951 387 60 0 0 chr5 48018767 48018817 -104518442 + (TAA)n Simple_repeat Simple_repeat 2 51 0 3 951 195 114 0 0 chr5 48019281 48019316 -104517943 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 951 450 0 0 0 chr5 48019400 48019450 -104517809 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 951 3972 81 9 2 chr5 48019551 48020095 -104517164 - L1_Mus3 LINE L1 -1 6637 6090 3 951 1074 259 90 23 chr5 48022509 48023060 -104514199 + L1M2 LINE L1 4151 4703 -1183 3 951 334 357 18 9 chr5 48023152 48023265 -104513994 + B4A SINE B4 9 122 -170 3 951 465 361 18 40 chr5 48023283 48023505 -104513754 + B4 SINE B4 76 292 0 3 951 392 0 21 0 chr5 48023524 48023572 -104513687 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 951 3143 185 68 26 chr5 48023576 48024240 -104513019 - RLTR17 LTR ERVK 0 692 1 4 951 24 53 0 0 chr5 48024286 48024324 -104512935 + AT_rich Low_complexity Low_complexity 1 38 0 4 951 8030 96 33 3 chr5 48024485 48025651 -104511608 + Lx3_Mus LINE L1 5793 6994 -15 4 951 23 54 0 0 chr5 48025658 48025695 -104511564 + AT_rich Low_complexity Low_complexity 1 37 0 4 951 255 125 0 0 chr5 48026575 48026615 -104510644 + (CCCCCA)n Simple_repeat Simple_repeat 3 42 0 4 951 333 47 0 0 chr5 48026635 48026678 -104510581 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 951 208 145 31 46 chr5 48026692 48026757 -104510502 + A-rich Low_complexity Low_complexity 4 67 0 4 951 931 107 0 48 chr5 48028858 48028998 -104508261 + B1_Mus1 SINE Alu 7 139 -9 4 951 237 33 0 0 chr5 48028998 48029028 -104508231 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 951 603 208 58 0 chr5 48029034 48029188 -104508071 + MYSERV-int LTR ERVK 6371 6533 -17 5 951 895 269 44 35 chr5 48029211 48029550 -104507709 + RLTR15 LTR ERVK 1 342 -17 5 951 2117 200 11 18 chr5 48029560 48030009 -104507250 - L1_Mur3 LINE L1 -246 5634 5189 5 951 2856 260 58 4 chr5 48030000 48030741 -104506518 + Lx6 LINE L1 6309 7089 -371 5 951 503 264 22 70 chr5 48030741 48030909 -104506350 + RMER20B LTR ERVK 1 159 -357 5 951 406 295 0 0 chr5 48031261 48031356 -104505903 + Lx6 LINE L1 7289 7383 -77 5 951 1870 294 26 4 chr5 48031420 48031954 -104505305 - Lx6 LINE L1 0 7460 6556 5 951 300 323 179 19 chr5 48031959 48032278 -104504981 - L1M5 LINE L1 -796 5350 4981 5 951 726 317 106 52 chr5 48032510 48033199 -104504060 - L1M5 LINE L1 -1443 4703 3978 5 951 195 69 0 0 chr5 48033730 48033759 -104503500 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 951 2441 119 67 35 chr5 48034595 48035055 -104502204 - IAPLTR2_Mm LTR ERVK 0 475 1 5 951 27223 127 61 8 chr5 48035175 48036489 -104500770 - L1_Mus3 LINE L1 -7 6631 5244 5 951 330 26 0 0 chr5 48036489 48036528 -104500731 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 951 27223 147 17 11 chr5 48036528 48041299 -104495960 - L1_Mus3 LINE L1 -640 5243 437 5 951 1183 88 6 12 chr5 48041326 48041499 -104495760 - L1_Mus1 LINE L1 -1 6566 6395 6 951 237 330 88 75 chr5 48042671 48042966 -104494293 - MLT1C LTR MaLR -108 359 61 6 951 1138 313 49 14 chr5 48043661 48044005 -104493254 + ORR1D2 LTR MaLR 1 356 -14 6 951 28 0 0 0 chr5 48044535 48044563 -104492696 + AT_rich Low_complexity Low_complexity 1 28 0 6 951 284 374 0 0 chr5 48044673 48044780 -104492479 + MTE2a LTR MaLR 1 107 -272 6 951 327 82 0 0 chr5 48044803 48044852 -104492407 - B1_Mur4 SINE Alu 0 150 102 6 951 286 271 61 70 chr5 48044865 48044980 -104492279 + MTE2a LTR MaLR 121 234 -145 6 951 1466 66 0 0 chr5 48045202 48045384 -104491875 - L1_Mus1 LINE L1 -129 6438 6257 6 951 871 117 69 0 chr5 48045384 48045529 -104491730 + L1Md_F2 LINE L1 6415 6569 -13 6 951 725 351 59 8 chr5 48046094 48046450 -104490809 + Lx8 LINE L1 6814 7187 -286 6 951 463 344 73 38 chr5 48047012 48047326 -104489933 + MLT1A1 LTR MaLR 44 368 -40 6 951 468 0 0 0 chr5 48047461 48047513 -104489746 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 951 391 335 83 34 chr5 48047603 48047869 -104489390 - B4A SINE B4 -11 281 3 7 951 411 21 0 0 chr5 48047910 48047958 -104489301 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 951 798 252 68 55 chr5 48048215 48048580 -104488679 + ORR1D2 LTR MaLR 1 370 0 7 951 2173 355 44 18 chr5 48049115 48050266 -104486993 + Lx8 LINE L1 6106 7286 -187 7 951 371 229 117 18 chr5 48051072 48051183 -104486076 + Lx4B LINE L1 6935 7056 -2 7 951 1511 329 107 46 chr5 48051321 48052327 -104484932 + Lx8 LINE L1 6397 7464 -9 7 951 7000 179 25 17 chr5 48052547 48054967 -104482292 - Lx3C LINE L1 -2 6974 4522 7 951 5451 130 84 1 chr5 48054976 48055931 -104481328 + Lx3C LINE L1 3476 4509 -1368 7 951 327 49 0 0 chr5 48056223 48056264 -104480995 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 7 951 748 321 5 10 chr5 48056633 48056828 -104480431 - B4 SINE B4 0 292 99 7 951 22 35 0 0 chr5 48057301 48057330 -104479929 + AT_rich Low_complexity Low_complexity 1 29 0 8 951 724 295 43 16 chr5 48057476 48057662 -104479597 + B3 SINE B2 1 191 -25 8 951 38346 8 0 7 chr5 48057788 48062995 -104474264 + L1Md_A LINE L1 422 5586 -297 8 951 8806 12 1 0 chr5 48062995 48063990 -104473269 + L1Md_A LINE L1 5587 6582 0 8 951 243 348 98 16 chr5 48064876 48065060 -104472199 - MLT1A1 LTR MaLR 0 408 210 8 951 297 334 114 25 chr5 48065240 48065599 -104471660 + L1MB4 LINE L1 5687 6077 -103 8 951 937 46 8 0 chr5 48065600 48065730 -104471529 + L1_Mus2 LINE L1 6436 6566 0 8 951 215 357 0 0 chr5 48067944 48068028 -104469231 + GA-rich Low_complexity Low_complexity 1 84 0 8 951 227 31 31 0 chr5 48068504 48068536 -104468723 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 951 1401 71 0 20 chr5 48068606 48068808 -104468451 + L1Md_F2 LINE L1 6373 6570 -12 8 951 2123 175 36 22 chr5 48069211 48069626 -104467633 - MTC LTR MaLR 0 421 1 8 951 570 294 11 22 chr5 48071086 48071267 -104465992 + B3A SINE B2 1 179 -19 9 951 27 0 0 0 chr5 48072031 48072058 -104465201 + AT_rich Low_complexity Low_complexity 1 27 0 9 951 357 24 0 0 chr5 48074725 48074767 -104462492 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 951 321 93 0 0 chr5 48075286 48075340 -104461919 + (A)n Simple_repeat Simple_repeat 1 54 0 9 951 276 343 153 35 chr5 48075556 48075810 -104461449 + B4 SINE B4 1 284 -8 9 951 540 0 0 0 chr5 48075814 48075874 -104461385 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 951 310 357 64 0 chr5 48076091 48076248 -104461011 - LTR33 LTR ERVL -338 177 11 9 951 216 86 0 0 chr5 48076882 48076917 -104460342 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 951 2939 34 0 0 chr5 48076952 48077304 -104459955 - L1Md_T LINE L1 -2 6580 6229 9 951 1102 85 0 12 chr5 48077607 48077773 -104459486 + (GGAGA)n Simple_repeat Simple_repeat 5 168 0 9 951 569 184 0 48 chr5 48077778 48077944 -104459315 + G-rich Low_complexity Low_complexity 1 158 0 1 951 203 334 0 15 chr5 48078357 48078439 -104458820 + L2a LINE L2 3308 3426 0 1 951 24 0 0 0 chr5 48079243 48079267 -104457992 + AT_rich Low_complexity Low_complexity 1 24 0 1 951 777 194 0 0 chr5 48079328 48079488 -104457771 + (TA)n Simple_repeat Simple_repeat 2 161 0 1 951 4637 269 63 41 chr5 48081134 48081690 -104455569 + Lx6 LINE L1 6019 6574 -886 1 951 4380 43 0 9 chr5 48081690 48082228 -104455031 + L1Md_F2 LINE L1 6037 6569 -13 1 951 4637 269 63 41 chr5 48082228 48082395 -104454864 + Lx6 LINE L1 6575 6742 -718 1 951 228 35 0 0 chr5 48082395 48082424 -104454835 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 951 4637 269 63 41 chr5 48082424 48083092 -104454167 + Lx6 LINE L1 6743 7441 -19 1 951 1611 205 3 7 chr5 48083157 48083452 -104453807 - Lx5 LINE L1 -74 6976 6683 1 951 1735 249 132 65 chr5 48084720 48085552 -104451707 - RMER17B LTR ERVK -70 888 1 1 951 32 0 0 0 chr5 48086595 48086627 -104450632 + AT_rich Low_complexity Low_complexity 1 32 0 1 951 215 387 115 23 chr5 48087704 48087921 -104449338 - MIRb SINE MIR -28 240 4 1 951 239 320 126 56 chr5 48088025 48088240 -104449019 + AmnSINE1 SINE SINE 147 376 -199 1 951 211 216 0 0 chr5 48088464 48088501 -104448758 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 1 951 201 271 0 20 chr5 48089138 48089187 -104448072 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 951 384 229 122 11 chr5 48089556 48089737 -104447522 + Lx9 LINE L1 7437 7637 -7 1 951 219 329 62 12 chr5 48090750 48090830 -104446429 - MIRc SINE MIR -148 120 37 1 951 413 301 78 26 chr5 48091021 48091236 -104446023 - MLT1A0 LTR MaLR -2 406 175 1 951 216 0 0 0 chr5 48092117 48092141 -104445118 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 1 951 194 323 103 41 chr5 48092289 48092386 -104444873 - L4 LINE RTE -850 1179 1077 1 951 660 313 85 41 chr5 48092407 48092861 -104444398 - Lx8 LINE L1 -104 7369 6850 1 951 237 353 50 55 chr5 48093260 48093461 -104443798 - MLT2F LTR ERVL -49 614 415 1 951 909 309 83 14 chr5 48093761 48094101 -104443158 - L1MB1 LINE L1 -149 6019 5658 1 951 411 56 0 0 chr5 48094101 48094155 -104443104 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 1 951 909 309 83 14 chr5 48094155 48094306 -104442953 - L1MB1 LINE L1 -511 5657 5495 1 951 201 39 0 0 chr5 48094424 48094450 -104442809 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 951 233 390 0 0 chr5 48094710 48094810 -104442449 + MTEb LTR MaLR 278 377 -2 1 951 409 318 101 57 chr5 48094871 48095384 -104441875 - L1M3 LINE L1 -746 5397 4876 1 951 1191 289 68 15 chr5 48095611 48096228 -104441031 - L1M3 LINE L1 -1802 4338 3689 1 951 332 270 77 31 chr5 48096344 48096552 -104440707 - L1MB1 LINE L1 -2464 3682 3464 1 951 861 86 0 0 chr5 48096729 48096857 -104440402 + (TC)n Simple_repeat Simple_repeat 1 128 0 1 951 475 306 32 50 chr5 48097109 48097391 -104439868 + L1M3 LINE L1 2454 2730 -3410 1 951 457 36 0 0 chr5 48097391 48097446 -104439813 - ORR1A1 LTR MaLR 0 346 292 1 951 6370 37 0 0 chr5 48097451 48098208 -104439051 - L1Md_T LINE L1 0 6582 5826 1 951 2679 76 0 0 chr5 48098208 48098564 -104438695 + L1_Mm LINE L1 2066 2421 -3462 1 951 427 113 0 0 chr5 48098564 48098626 -104438633 - ORR1A1 LTR MaLR -41 305 244 1 951 208 345 11 56 chr5 48098956 48099045 -104438214 + L2c LINE L2 3299 3383 -4 1 951 235 0 28 28 chr5 48099647 48099683 -104437576 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 1 951 43 0 0 0 chr5 48100046 48100089 -104437170 + AT_rich Low_complexity Low_complexity 1 43 0 1 951 683 261 56 37 chr5 48100106 48100321 -104436938 - Lx9 LINE L1 -407 7237 7019 1 951 234 167 82 82 chr5 48100354 48100452 -104436807 - L1MDa LINE L1 -809 5941 5844 1 951 225 0 0 0 chr5 48100768 48100793 -104436466 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 951 273 57 0 0 chr5 48100793 48100827 -104436432 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 951 1223 285 71 89 chr5 48100903 48102122 -104435137 - L1MDa LINE L1 -1082 5455 4259 1 951 1256 354 96 21 chr5 48102176 48103167 -104434092 - L1MDa LINE L1 -5217 1416 352 1 952 403 267 10 0 chr5 48103526 48103627 -104433632 + ORR1E LTR MaLR 8 109 -250 1 952 300 348 30 30 chr5 48103649 48103815 -104433444 + ORR1E LTR MaLR 210 375 -4 1 952 6368 65 20 0 chr5 48103956 48104800 -104432459 - L1_Mm LINE L1 -549 5334 4474 1 952 2796 86 13 3 chr5 48104800 48105187 -104432072 + L1_Mus1 LINE L1 6176 6566 -1 1 952 423 0 0 0 chr5 48106146 48106193 -104431066 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 952 883 161 128 28 chr5 48106623 48106802 -104430457 - Lx5 LINE L1 -4 7046 6850 1 952 346 374 144 38 chr5 48107419 48107841 -104429418 + L2 LINE L2 2484 2950 -469 1 952 24 0 0 0 chr5 48108299 48108323 -104428936 + AT_rich Low_complexity Low_complexity 1 24 0 1 952 27 0 0 0 chr5 48109899 48109926 -104427333 + AT_rich Low_complexity Low_complexity 1 27 0 1 952 226 284 7 80 chr5 48110281 48110419 -104426840 + Tigger2b DNA MER2_type 191 318 -408 1 952 1210 238 128 21 chr5 48110429 48110803 -104426456 - MTC LTR MaLR -3 418 5 1 952 243 309 0 10 chr5 48110977 48111075 -104426184 - MurSatRep1 Unknown Unknown -1854 283 187 1 952 208 256 12 47 chr5 48111365 48111451 -104425808 + (CATA)n Simple_repeat Simple_repeat 4 86 0 1 952 26 50 0 0 chr5 48111454 48111494 -104425765 + AT_rich Low_complexity Low_complexity 1 40 0 1 952 2726 52 29 0 chr5 48111652 48111995 -104425264 + L1_Mus1 LINE L1 6209 6561 -6 1 952 528 348 55 82 chr5 48112949 48113240 -104424019 + B4 SINE B4 1 283 -9 1 952 373 343 43 21 chr5 48113341 48113481 -104423778 + B4A SINE B4 4 146 -146 1 952 1203 28 0 0 chr5 48114321 48114464 -104422795 + (TG)n Simple_repeat Simple_repeat 1 143 0 1 952 212 333 83 21 chr5 48114534 48114678 -104422581 - L2a LINE L2 -234 3192 3040 1 952 21 89 0 0 chr5 48116882 48116938 -104420321 + AT_rich Low_complexity Low_complexity 1 56 0 1 952 215 175 25 0 chr5 48117261 48117301 -104419958 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 952 289 313 100 42 chr5 48117349 48117469 -104419790 + B1F SINE Alu 14 140 -9 1 952 192 182 0 0 chr5 48117534 48117578 -104419681 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 952 955 83 13 0 chr5 48117578 48117734 -104419525 + (GA)n Simple_repeat Simple_repeat 2 159 0 1 952 11754 167 65 14 chr5 48117735 48118544 -104418715 + Lx4B LINE L1 3366 4205 -1672 1 952 291 114 0 0 chr5 48118544 48118588 -104418671 + (TA)n Simple_repeat Simple_repeat 2 45 0 1 952 11754 198 53 16 chr5 48118588 48121226 -104416033 + Lx4B LINE L1 4206 7041 -17 1 952 23 0 0 0 chr5 48122260 48122283 -104414976 + AT_rich Low_complexity Low_complexity 1 23 0 1 952 312 235 55 66 chr5 48122365 48122456 -104414803 + B3A SINE B2 6 95 -103 1 952 342 379 41 0 chr5 48122669 48122838 -104414421 - B4A SINE B4 -111 181 6 1 952 302 326 26 33 chr5 48124097 48124249 -104413010 - MIRb SINE MIR -76 192 42 1 952 22 35 0 0 chr5 48125299 48125328 -104411931 + AT_rich Low_complexity Low_complexity 1 29 0 1 952 34 65 0 0 chr5 48126082 48126144 -104411115 + AT_rich Low_complexity Low_complexity 1 62 0 1 952 1026 90 0 6 chr5 48126144 48126301 -104410958 - L1Md_F2 LINE L1 0 6582 6427 1 952 180 125 0 0 chr5 48126496 48126528 -104410731 + (T)n Simple_repeat Simple_repeat 1 32 0 1 952 597 246 10 86 chr5 48126634 48126805 -104410454 + B3A SINE B2 1 158 -40 1 952 369 0 0 0 chr5 48126805 48126846 -104410413 + (CAA)n Simple_repeat Simple_repeat 1 41 0 1 952 597 246 10 86 chr5 48126846 48126883 -104410376 + B3A SINE B2 159 193 -5 1 952 2192 205 45 2 chr5 48127117 48127564 -104409695 - L1VL2 LINE L1 -5785 633 179 1 952 7269 80 4 9 chr5 48127672 48128735 -104408524 - L1Md_F2 LINE L1 -12 6570 5516 1 952 4198 80 5 0 chr5 48128734 48129308 -104407951 + L1Md_F2 LINE L1 4922 5498 -385 1 952 28 29 0 0 chr5 48129996 48130031 -104407228 + AT_rich Low_complexity Low_complexity 1 35 0 1 952 21 0 0 0 chr5 48130058 48130079 -104407180 + AT_rich Low_complexity Low_complexity 1 21 0 1 952 343 305 33 25 chr5 48130286 48130407 -104406852 - MER5A DNA MER1_type -64 125 4 1 952 231 347 13 26 chr5 48130440 48130517 -104406742 - RSINE1 SINE B4 -87 78 3 1 952 251 219 0 30 chr5 48130843 48130909 -104406350 + L1M2 LINE L1 5511 5574 -726 1 952 195 42 0 0 chr5 48131254 48131278 -104405981 + (T)n Simple_repeat Simple_repeat 1 24 0 1 952 3744 37 13 0 chr5 48131289 48131743 -104405516 - L1Md_T LINE L1 0 6582 6123 1 952 222 237 0 0 chr5 48131881 48131957 -104405302 + CT-rich Low_complexity Low_complexity 2 77 0 1 952 701 303 81 76 chr5 48132443 48132613 -104404646 + MLT1B LTR MaLR 29 191 -199 1 952 1289 178 4 9 chr5 48132613 48132840 -104404419 + URR1A DNA MER1_type 1 226 0 1 952 701 303 81 76 chr5 48132840 48133026 -104404233 + MLT1B LTR MaLR 192 387 -3 1 952 237 324 138 44 chr5 48133256 48133437 -104403822 + MLT1I LTR MaLR 101 298 -113 1 952 2125 231 54 19 chr5 48134240 48134756 -104402503 + RMER5 LTR ERV1 1 534 0 1 952 441 370 7 29 chr5 48136835 48136974 -104400285 - B4 SINE B4 -74 218 83 1 952 314 240 13 26 chr5 48137332 48137409 -104399850 + MTE2b LTR MaLR 253 328 -51 1 952 506 351 67 51 chr5 48137898 48138273 -104398986 + MLT1J-int LTR MaLR 981 1361 -26 1 952 295 368 39 39 chr5 48139815 48139945 -104397314 - MLT1H LTR MaLR -37 512 383 1 952 191 61 30 0 chr5 48140253 48140286 -104396973 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 1 952 23 33 0 0 chr5 48141724 48141754 -104395505 + AT_rich Low_complexity Low_complexity 1 30 0 1 952 681 47 0 0 chr5 48141763 48141848 -104395411 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 952 389 320 20 10 chr5 48141853 48141954 -104395305 - RSINE1 SINE B4 -24 141 40 1 952 249 301 0 112 chr5 48143154 48143270 -104393989 + MER110A LTR ERV1 70 172 -296 1 952 1470 247 56 68 chr5 48143687 48144099 -104393160 - MTD LTR MaLR -12 407 1 1 952 24 0 0 0 chr5 48144453 48144477 -104392782 + AT_rich Low_complexity Low_complexity 1 24 0 1 952 332 98 33 0 chr5 48144618 48144679 -104392580 + (TTTTC)n Simple_repeat Simple_repeat 3 65 0 1 952 336 375 69 7 chr5 48144708 48144985 -104392274 + L1MDa LINE L1 242 535 -6098 1 952 324 244 260 0 chr5 48145183 48145284 -104391975 + B1_Mus1 SINE Alu 1 126 -21 2 952 298 262 33 27 chr5 48145739 48145915 -104391344 + L1ME1 LINE L1 5789 5962 -280 2 952 528 16 0 0 chr5 48146007 48146068 -104391191 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 952 21 0 0 0 chr5 48147200 48147221 -104390038 + AT_rich Low_complexity Low_complexity 1 21 0 2 952 304 365 80 20 chr5 48147317 48147518 -104389741 + MLT1J LTR MaLR 1 213 -299 2 952 243 88 0 0 chr5 48148627 48148661 -104388598 + (T)n Simple_repeat Simple_repeat 1 34 0 2 952 35785 54 11 16 chr5 48149331 48154664 -104382595 + L1Md_A LINE L1 279 5586 -297 2 952 8528 28 0 0 chr5 48154664 48155660 -104381599 + L1Md_A LINE L1 5587 6582 0 2 952 247 357 20 132 chr5 48157159 48157278 -104379981 - B4 SINE B4 -101 191 81 2 952 945 77 30 0 chr5 48157278 48157446 -104379813 + (GTTTG)n Simple_repeat Simple_repeat 2 174 0 2 952 247 357 20 132 chr5 48157446 48157523 -104379736 - B4 SINE B4 -212 80 17 2 952 995 140 70 5 chr5 48157749 48157936 -104379323 - Lx5 LINE L1 -1120 5930 5732 2 952 4019 223 91 34 chr5 48157930 48158313 -104378946 + Lx5 LINE L1 5933 6319 -731 2 952 315 0 0 0 chr5 48158313 48158348 -104378911 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 952 4019 223 91 34 chr5 48158348 48159015 -104378244 + Lx5 LINE L1 6320 7043 -7 2 952 275 281 78 23 chr5 48163364 48163467 -104373792 - PB1D7 SINE Alu -24 125 10 2 952 652 328 69 55 chr5 48163786 48164219 -104373040 - LTR86B2 LTR ERVL -41 446 8 2 952 1251 82 21 21 chr5 48165164 48165351 -104371908 + B2_Mm2 SINE B2 3 189 -6 2 952 396 0 0 0 chr5 48165709 48165753 -104371506 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 952 633 314 5 58 chr5 48165756 48165962 -104371297 - MTE2b LTR MaLR -183 196 2 2 952 205 250 0 111 chr5 48167240 48167312 -104369947 - L2b LINE L2 -3 3372 3309 2 952 443 272 83 42 chr5 48167457 48167649 -104369610 - Tigger7 DNA MER2_type -32 2459 2260 2 952 729 34 0 0 chr5 48167788 48167876 -104369383 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 952 243 354 82 38 chr5 48167911 48168178 -104369081 - B4A SINE B4 -12 280 2 2 952 312 342 36 9 chr5 48168280 48168392 -104368867 - Tigger7 DNA MER2_type -2184 307 193 2 952 2793 163 132 16 chr5 48168394 48168886 -104368373 - RMER6C LTR ERVK -2 688 123 2 952 366 23 0 0 chr5 48168886 48168929 -104368330 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 952 2793 163 132 16 chr5 48168929 48169052 -104368207 - RMER6C LTR ERVK -568 122 3 2 952 189 239 80 39 chr5 48169664 48169758 -104367501 + MIRc SINE MIR 40 139 -129 2 952 405 324 25 76 chr5 48170438 48170635 -104366624 - LTR33A_ LTR ERVL -324 207 21 2 952 22 0 0 0 chr5 48170707 48170729 -104366530 + AT_rich Low_complexity Low_complexity 1 22 0 2 952 45 34 0 0 chr5 48171026 48171085 -104366174 + AT_rich Low_complexity Low_complexity 1 59 0 2 952 365 0 22 0 chr5 48171085 48171130 -104366129 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 952 216 0 0 0 chr5 48171527 48171551 -104365708 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 952 794 104 39 13 chr5 48171551 48171707 -104365552 - Lx2 LINE L1 -4 6993 6834 2 952 441 0 0 0 chr5 48172076 48172125 -104365134 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 952 270 0 0 0 chr5 48172125 48172154 -104365105 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 952 209 128 40 60 chr5 48172487 48172537 -104364722 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 2 952 204 216 0 0 chr5 48172543 48172594 -104364665 + GA-rich Low_complexity Low_complexity 2 52 0 2 952 1027 141 6 6 chr5 48173139 48173310 -104363949 + URR1A DNA MER1_type 56 226 0 2 952 201 330 129 10 chr5 48173332 48173433 -104363826 - MIRc SINE MIR -114 154 42 2 952 569 118 8 0 chr5 48174023 48174142 -104363117 + (TC)n Simple_repeat Simple_repeat 1 120 0 2 952 216 0 0 0 chr5 48174142 48174166 -104363093 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 952 23 0 0 0 chr5 48174426 48174449 -104362810 + AT_rich Low_complexity Low_complexity 1 23 0 2 952 204 40 0 0 chr5 48174802 48174827 -104362432 + (A)n Simple_repeat Simple_repeat 1 25 0 2 952 960 306 39 51 chr5 48175353 48175784 -104361475 - Lx7 LINE L1 -329 7367 6942 2 952 243 256 99 37 chr5 48175784 48175865 -104361394 + 5S rRNA rRNA 11 96 -25 2 952 318 175 133 19 chr5 48178765 48178870 -104358389 - Lx9 LINE L1 0 7644 7528 2 952 409 233 21 149 chr5 48178879 48179020 -104358239 - Lx9 LINE L1 -318 7326 7204 2 952 1532 241 82 53 chr5 48179018 48179543 -104357716 + L1_Rod LINE L1 5177 5716 -131 2 952 1145 299 113 0 chr5 48179543 48179878 -104357381 - MTD LTR MaLR 0 419 47 2 952 620 321 42 126 chr5 48180295 48180768 -104356491 + RLTR11A2 LTR ERVK 1 446 -82 2 952 869 221 172 20 chr5 48180846 48181271 -104355988 + Lx6 LINE L1 5628 6143 -1317 2 952 1446 235 39 3 chr5 48181264 48181597 -104355662 + Lx6 LINE L1 6323 6667 -793 2 952 346 200 0 0 chr5 48181605 48181665 -104355594 + Lx6 LINE L1 6914 6973 -487 2 952 414 0 0 0 chr5 48181669 48181715 -104355544 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 952 1086 225 13 71 chr5 48181723 48182034 -104355225 + Lx7 LINE L1 7403 7695 -1 2 952 462 316 11 23 chr5 48183768 48183943 -104353316 + MLT1B LTR MaLR 1 173 -217 2 952 693 0 0 0 chr5 48184225 48184302 -104352957 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 952 186 167 0 0 chr5 48184304 48184340 -104352919 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 952 463 342 51 0 chr5 48184549 48184707 -104352552 + B3A SINE B2 9 174 -24 2 952 4276 41 51 0 chr5 48184761 48185295 -104351964 - L1Md_F3 LINE L1 -16 6568 6008 2 952 257 254 0 66 chr5 48185809 48185885 -104351374 - MER5B DNA MER1_type -6 172 102 2 952 195 204 0 0 chr5 48188731 48188775 -104348484 + CT-rich Low_complexity Low_complexity 1 44 0 2 952 253 211 0 34 chr5 48190499 48190558 -104346701 - MTE2b LTR MaLR -15 364 308 2 952 1358 223 46 98 chr5 48191129 48191517 -104345742 - ORR1D1 LTR MaLR -2 372 5 2 952 821 316 73 11 chr5 48191634 48191909 -104345350 + ORR1D2 LTR MaLR 74 365 -5 2 952 840 311 80 37 chr5 48191976 48192377 -104344882 + MLT2B1 LTR ERVL 3 420 -100 2 952 354 276 40 30 chr5 48192444 48192545 -104344714 - PB1D10 SINE Alu -2 115 14 2 952 656 0 25 0 chr5 48193735 48193814 -104343445 + (TTTTC)n Simple_repeat Simple_repeat 2 82 0 2 952 1231 53 6 18 chr5 48193818 48193989 -104343270 - L1Md_F2 LINE L1 -13 6569 6401 2 952 23 0 0 0 chr5 48194648 48194671 -104342588 + AT_rich Low_complexity Low_complexity 1 23 0 2 952 1716 77 0 8 chr5 48195523 48195759 -104341500 - L1Md_F2 LINE L1 -19 6563 6330 2 952 3367 74 0 0 chr5 48195759 48196192 -104341067 + L1Md_F2 LINE L1 5904 6336 -246 2 952 25 0 0 0 chr5 48196192 48196217 -104341042 + AT_rich Low_complexity Low_complexity 1 25 0 2 952 22 35 0 0 chr5 48196344 48196373 -104340886 + AT_rich Low_complexity Low_complexity 1 29 0 2 952 335 305 37 19 chr5 48196384 48196491 -104340768 - RSINE1 SINE B4 -40 125 17 2 952 231 364 54 9 chr5 48196762 48196873 -104340386 - PB1D7 SINE Alu 0 120 5 2 952 585 164 22 11 chr5 48197018 48197208 -104340051 + (TAGA)n Simple_repeat Simple_repeat 1 192 0 2 952 369 0 0 0 chr5 48200963 48201004 -104336255 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2 952 4791 133 31 15 chr5 48201004 48201778 -104335481 - Lx3A LINE L1 -13 6968 6180 2 952 624 103 17 8 chr5 48201957 48202074 -104335185 + (TC)n Simple_repeat Simple_repeat 1 118 0 2 952 846 275 121 58 chr5 48202173 48202520 -104334739 - MTE2b LTR MaLR -10 369 1 2 952 342 266 32 0 chr5 48202521 48202615 -104334644 + MLT1A1 LTR MaLR 295 391 -17 2 952 449 336 26 46 chr5 48202697 48202832 -104334427 + B4A SINE B4 2 133 -159 2 952 537 218 18 48 chr5 48202832 48202981 -104334278 + RMER19C LTR ERVK 1 214 -397 2 952 2134 192 16 26 chr5 48202981 48203493 -104333766 + RLTR31A_Mm LTR ERVK 1 464 -93 2 952 2152 204 20 5 chr5 48203551 48203959 -104333300 + RMER19C LTR ERVK 198 611 0 2 952 28720 97 19 19 chr5 48203981 48208771 -104328488 + L1Md_F2 LINE L1 358 5233 -650 2 952 540 0 0 0 chr5 48208771 48208831 -104328428 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 952 28720 88 6 23 chr5 48208831 48209062 -104328197 + L1Md_F2 LINE L1 5234 5376 -507 2 952 3755 44 2 0 chr5 48209049 48209626 -104327633 - L1Md_F3 LINE L1 -540 6042 5465 2 952 4134 56 4 4 chr5 48209626 48210149 -104327110 + L1Md_F3 LINE L1 6048 6570 -14 2 952 1885 52 4 0 chr5 48210159 48210388 -104326871 + L1Md_F2 LINE L1 5356 5585 -298 2 952 5895 98 117 2 chr5 48210389 48211277 -104325982 + L1Md_F2 LINE L1 5587 6576 -6 2 952 217 353 11 23 chr5 48211361 48211448 -104325811 + RSINE1 SINE B4 78 163 -2 2 952 235 366 99 61 chr5 48211621 48211883 -104325376 - L2 LINE L2 -619 2800 2529 2 952 261 0 0 0 chr5 48212763 48212792 -104324467 + (A)n Simple_repeat Simple_repeat 1 29 0 2 952 798 280 113 34 chr5 48212879 48213430 -104323829 + Lx8 LINE L1 5350 5914 -1782 2 952 2126 303 100 59 chr5 48213994 48214642 -104322617 + Lx8 LINE L1 6221 6914 -559 2 952 198 0 0 0 chr5 48214642 48214664 -104322595 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 952 2126 303 100 59 chr5 48214664 48214696 -104322563 + Lx8 LINE L1 6915 6940 -533 2 952 414 0 0 0 chr5 48214696 48214742 -104322517 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 952 2126 303 100 59 chr5 48214742 48215254 -104322005 + Lx8 LINE L1 6941 7462 -11 2 952 693 183 291 0 chr5 48215793 48215968 -104321291 + URR1A DNA MER1_type 1 226 0 2 952 315 0 0 0 chr5 48217232 48217267 -104319992 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 952 387 0 0 0 chr5 48217267 48217309 -104319950 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 952 23 92 0 0 chr5 48217339 48217404 -104319855 + AT_rich Low_complexity Low_complexity 1 65 0 2 952 228 264 57 11 chr5 48219072 48219160 -104318099 - MER77 LTR ERVL -89 518 427 2 952 633 294 54 50 chr5 48219195 48219411 -104317848 - ORR1D2 LTR MaLR 0 370 152 2 952 5103 55 3 9 chr5 48219411 48220073 -104317186 + L1Md_F2 LINE L1 5925 6582 0 2 952 633 294 54 50 chr5 48220073 48220096 -104317163 - ORR1D2 LTR MaLR -219 151 130 2 952 211 278 0 18 chr5 48220102 48220119 -104317140 + (CA)n Simple_repeat Simple_repeat 2 18 0 2 952 2406 189 38 31 chr5 48220119 48220642 -104316617 + RLTR11A2 LTR ERVK 1 527 0 2 952 211 278 0 18 chr5 48220642 48220679 -104316580 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 952 455 287 0 0 chr5 48220679 48220808 -104316451 - ORR1D2 LTR MaLR -241 133 5 2 952 198 103 0 0 chr5 48221159 48221188 -104316071 + (A)n Simple_repeat Simple_repeat 1 29 0 2 952 415 238 0 0 chr5 48222370 48222471 -104314788 - Lx9 LINE L1 -8 7636 7536 2 952 498 239 72 0 chr5 48222641 48222779 -104314480 + Lx9 LINE L1 7317 7464 -180 2 952 31 26 0 0 chr5 48223318 48223356 -104313903 + AT_rich Low_complexity Low_complexity 1 38 0 2 952 23 68 0 0 chr5 48223562 48223606 -104313653 + AT_rich Low_complexity Low_complexity 1 44 0 3 952 1094 82 7 0 chr5 48224110 48224256 -104313003 + B1_Mm SINE Alu 1 147 0 3 952 260 83 0 20 chr5 48224256 48224305 -104312954 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 952 2895 130 24 64 chr5 48224329 48224864 -104312395 - Lx LINE L1 0 6654 6141 3 952 574 232 154 37 chr5 48224908 48225156 -104312103 + RLTR10A LTR ERVK 114 411 0 3 952 3419 124 8 0 chr5 48225157 48225723 -104311536 - Lx LINE L1 -568 6086 5517 3 952 1212 209 33 50 chr5 48226837 48227060 -104310199 - Lx9 LINE L1 -8 7636 7421 3 952 222 91 0 0 chr5 48227060 48227093 -104310166 + (CATATA)n Simple_repeat Simple_repeat 1 33 0 3 952 1212 209 33 50 chr5 48227093 48227231 -104310028 - Lx9 LINE L1 -224 7420 7281 3 952 743 251 18 23 chr5 48227465 48227685 -104309574 + Lx5 LINE L1 5896 6114 -936 3 952 1152 29 0 7 chr5 48227732 48227870 -104309389 - B1_Mm SINE Alu -10 137 1 3 952 264 357 26 18 chr5 48228269 48228383 -104308876 - PB1D9 SINE Alu -5 115 1 3 952 492 168 16 8 chr5 48228465 48228591 -104308668 + CT-rich Low_complexity Low_complexity 6 132 0 3 952 450 0 0 0 chr5 48228597 48228647 -104308612 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 952 342 0 0 0 chr5 48228647 48228684 -104308575 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 952 2810 252 25 12 chr5 48230164 48230806 -104306453 + Lx6 LINE L1 6642 7291 -169 3 952 228 200 0 0 chr5 48230816 48230866 -104306393 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 3 952 281 324 36 9 chr5 48230922 48231034 -104306225 + Lx7 LINE L1 7205 7319 -377 3 952 774 274 78 31 chr5 48231359 48231717 -104305542 - L1MA6 LINE L1 -303 5997 5623 3 952 594 252 49 35 chr5 48231815 48232094 -104305165 + L1M2 LINE L1 5347 5625 -564 3 952 318 50 0 0 chr5 48233598 48233638 -104303621 + (TC)n Simple_repeat Simple_repeat 1 40 0 3 952 510 31 0 0 chr5 48233805 48233869 -104303390 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 953 30833 87 17 5 chr5 48234792 48240128 -104297131 + L1Md_F2 LINE L1 185 5584 -299 3 953 8089 41 4 3 chr5 48240130 48241125 -104296134 + L1Md_F2 LINE L1 5587 6582 0 3 953 207 391 134 13 chr5 48241513 48241819 -104295440 + L2 LINE L2 1107 1449 -1970 3 953 400 345 20 27 chr5 48242143 48242292 -104294967 - B1_Mur2 SINE Alu -1 148 1 3 953 313 293 25 81 chr5 48242424 48242621 -104294638 + L2 LINE L2 1999 2184 -1235 3 953 528 329 98 57 chr5 48242707 48243164 -104294095 + L2 LINE L2 2406 2881 -538 3 953 185 0 40 0 chr5 48243276 48243301 -104293958 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 953 277 208 19 0 chr5 48243881 48243934 -104293325 - B1_Mus1 SINE Alu -78 70 17 3 953 603 165 0 0 chr5 48244071 48244180 -104293079 + CT-rich Low_complexity Low_complexity 1 109 0 3 953 336 296 56 39 chr5 48244208 48244387 -104292872 - B3A SINE B2 -16 182 1 3 953 289 289 98 30 chr5 48245221 48245385 -104291874 + MLT1B LTR MaLR 1 175 -215 3 953 507 194 111 1 chr5 48245965 48246092 -104291167 + MERVL_2A-int LTR ERVL 3930 4170 -1591 3 953 13448 20 0 11 chr5 48246217 48247841 -104289418 - L1_Mm LINE L1 -1330 4553 2948 3 953 266 153 54 27 chr5 48247864 48247938 -104289321 + MERVL_2A-int LTR ERVL 5662 5737 -24 3 953 2020 212 48 59 chr5 48247955 48248431 -104288828 + MT2A LTR ERVL 1 462 -71 3 953 561 15 0 0 chr5 48248431 48248497 -104288762 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 953 2020 212 48 59 chr5 48248497 48248545 -104288714 + MT2A LTR ERVL 463 518 -15 3 953 209 41 78 39 chr5 48248740 48248791 -104288468 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 3 953 734 216 55 95 chr5 48248811 48249011 -104288248 + B3A SINE B2 1 192 -3 3 953 302 333 94 27 chr5 48249525 48249824 -104287435 + L1MC3 LINE L1 6139 6457 -1328 3 953 571 353 62 36 chr5 48249847 48250123 -104287136 - MTEa LTR MaLR -4 375 93 3 953 939 18 0 0 chr5 48250408 48250519 -104286740 - L1_Mm LINE L1 -2221 3662 3552 3 953 4358 79 0 0 chr5 48250521 48251093 -104286166 + L1Md_T LINE L1 6011 6582 0 3 953 252 0 0 0 chr5 48251136 48251164 -104286095 + (T)n Simple_repeat Simple_repeat 1 28 0 3 953 983 292 89 26 chr5 48251334 48251837 -104285422 + L1MC3 LINE L1 6885 7419 -366 3 953 1362 227 103 21 chr5 48251846 48252233 -104285026 - MTD LTR MaLR 0 419 1 3 953 266 264 0 62 chr5 48252357 48252454 -104284805 + L1MEc LINE L1 11 101 -6299 3 953 8963 8 0 0 chr5 48252499 48253626 -104283633 - L1Md_T LINE L1 0 6582 5478 3 953 446 274 127 34 chr5 48253640 48253908 -104283351 + L1MEc LINE L1 164 456 -5944 3 953 349 299 85 67 chr5 48254018 48254348 -104282911 + L1MEc LINE L1 679 1014 -5386 3 953 22 0 0 0 chr5 48254372 48254394 -104282865 + AT_rich Low_complexity Low_complexity 1 22 0 3 953 228 169 0 53 chr5 48254899 48254974 -104282285 + A-rich Low_complexity Low_complexity 2 72 0 3 953 259 239 88 90 chr5 48255148 48255340 -104281919 + L1MEc LINE L1 1912 2098 -4317 3 953 298 297 79 38 chr5 48255426 48255766 -104281493 + L1MEc LINE L1 2101 2454 -3946 3 953 2224 304 48 21 chr5 48255844 48256642 -104280617 + Lx8 LINE L1 6655 7473 0 3 953 2918 265 72 32 chr5 48257258 48258189 -104279070 + Lx7 LINE L1 6358 7325 -371 3 953 489 47 0 0 chr5 48258203 48258267 -104278992 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 953 191 173 19 0 chr5 48258278 48258330 -104278929 + T-rich Low_complexity Low_complexity 1 53 0 3 953 334 278 16 63 chr5 48258662 48258866 -104278393 - Lx8 LINE L1 -731 6965 6770 3 953 200 111 0 27 chr5 48258995 48259032 -104278227 + (TCC)n Simple_repeat Simple_repeat 1 36 0 3 953 771 292 5 5 chr5 48259049 48259262 -104277997 - B3 SINE B2 -1 215 3 3 953 255 224 54 45 chr5 48259274 48259386 -104277873 + L1MEc LINE L1 4919 5031 -1288 3 953 498 122 9 18 chr5 48259434 48259543 -104277716 + (TG)n Simple_repeat Simple_repeat 2 109 0 3 953 227 175 0 0 chr5 48259547 48259587 -104277672 + GA-rich Low_complexity Low_complexity 1 40 0 3 953 361 260 13 0 chr5 48259587 48259664 -104277595 - ID_B1 SINE B4 -12 212 135 3 953 328 20 0 39 chr5 48259939 48259990 -104277269 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 953 573 78 34 17 chr5 48260078 48260195 -104277064 + (TCTCTG)n Simple_repeat Simple_repeat 6 124 0 3 953 423 0 0 0 chr5 48260192 48260239 -104277020 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 953 21 0 0 0 chr5 48260422 48260443 -104276816 + AT_rich Low_complexity Low_complexity 1 21 0 3 953 631 303 6 0 chr5 48260741 48260916 -104276343 + LTR33 LTR ERVL 337 512 -3 3 953 338 378 23 11 chr5 48261602 48261776 -104275483 - MER5B DNA MER1_type -2 176 1 3 953 373 331 21 28 chr5 48262895 48262978 -104274281 + MER5A DNA MER1_type 2 85 -104 3 953 402 21 0 0 chr5 48262978 48263025 -104274234 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 953 444 19 0 0 chr5 48263025 48263077 -104274182 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 953 373 331 21 28 chr5 48263077 48263135 -104274124 + MER5A DNA MER1_type 86 142 -47 3 953 25 51 0 0 chr5 48263435 48263474 -104273785 + AT_rich Low_complexity Low_complexity 1 39 0 3 953 1315 287 103 58 chr5 48263525 48264157 -104273102 - Lx8 LINE L1 -5 7468 6809 3 953 495 264 16 8 chr5 48264693 48264815 -104272444 - MLT1D LTR MaLR -346 159 37 3 953 398 323 11 14 chr5 48264881 48265100 -104272159 + L1ME2z LINE L1 5743 5965 -199 3 953 379 182 11 43 chr5 48265167 48265259 -104272000 + HAL1-3A_ME LINE L1 1946 2034 -824 3 953 207 69 0 0 chr5 48265279 48265308 -104271951 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 953 300 312 37 55 chr5 48265380 48265543 -104271716 + L1M2 LINE L1 5043 5202 -941 3 953 468 51 0 0 chr5 48265629 48265688 -104271571 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 953 1438 277 96 40 chr5 48266348 48267014 -104270245 - Charlie12 DNA MER1_type -238 2635 1933 3 953 2905 177 21 5 chr5 48267092 48267665 -104269594 + L1Md_A LINE L1 419 1000 -5724 3 953 20999 60 1 5 chr5 48267666 48270412 -104266847 + L1Md_F3 LINE L1 2852 5586 -297 3 953 7694 47 13 5 chr5 48270412 48271402 -104265857 + L1Md_F3 LINE L1 5587 6584 0 3 953 244 272 84 46 chr5 48271402 48271687 -104265572 + L1_Mur3 LINE L1 5049 5344 -536 3 953 747 316 31 84 chr5 48271704 48272001 -104265258 - Charlie12 DNA MER1_type -1563 1310 1023 3 953 1579 162 97 9 chr5 48272001 48272331 -104264928 - RLTR15 LTR ERVK 0 359 1 3 953 747 316 31 84 chr5 48272331 48272485 -104264774 - Charlie12 DNA MER1_type -1851 1022 883 3 953 432 286 40 85 chr5 48272511 48272687 -104264572 + RMER30 DNA MER1_type 3 170 -32 3 953 300 399 24 18 chr5 48272546 48272712 -104264547 - Charlie12 DNA MER1_type -2700 173 7 3 953 310 362 46 17 chr5 48273106 48273280 -104263979 - LTR33 LTR ERVL -8 507 329 3 953 31367 87 29 15 chr5 48273379 48277842 -104259417 + L1Md_F2 LINE L1 217 5001 -882 3 953 2367 50 0 7 chr5 48277842 48278144 -104259115 + L1Md_F2 LINE L1 6271 6570 -12 3 953 12675 74 2 25 chr5 48278144 48278742 -104258517 + L1Md_F2 LINE L1 5002 5585 -298 3 953 8129 42 1 14 chr5 48278743 48279446 -104257813 + L1Md_F2 LINE L1 5587 6285 -297 3 953 3467 20 2 0 chr5 48279446 48279841 -104257418 - MTA_Mm LTR MaLR 0 396 1 3 953 8129 42 1 14 chr5 48279841 48280146 -104257113 + L1Md_F2 LINE L1 6286 6582 0 3 953 190 116 47 0 chr5 48280190 48280233 -104257026 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 3 953 474 348 31 35 chr5 48280446 48280675 -104256584 + B4A SINE B4 4 231 -61 3 953 362 354 90 25 chr5 48280677 48280877 -104256382 + B3 SINE B2 2 214 -2 3 953 425 242 40 0 chr5 48280858 48280957 -104256302 + B4A SINE B4 189 291 -1 3 953 23 0 0 0 chr5 48281335 48281358 -104255901 + AT_rich Low_complexity Low_complexity 1 23 0 3 953 1817 223 36 15 chr5 48281770 48282239 -104255020 + RLTR16 LTR ERVK 1 479 -26 3 953 421 248 33 0 chr5 48282726 48282847 -104254412 - L1MA5A LINE L1 -459 5838 5714 3 953 288 277 21 0 chr5 48282925 48283019 -104254240 + ERVL-int LTR ERVL 5519 5614 -143 3 953 420 328 81 37 chr5 48283134 48283406 -104253853 + MLT2B2 LTR ERVL 6 289 -226 3 953 213 65 0 0 chr5 48283739 48283770 -104253489 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 953 225 244 12 12 chr5 48283992 48284075 -104253184 + L1M5 LINE L1 3405 3487 -2659 3 953 285 315 53 32 chr5 48284592 48284687 -104252572 + MamGypLTR1b LTR Gypsy 586 682 -100 3 953 276 30 0 0 chr5 48284894 48284927 -104252332 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 953 200 35 35 0 chr5 48285194 48285223 -104252036 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 3 953 732 88 0 0 chr5 48285497 48285599 -104251660 + Lx4A LINE L1 6630 6731 -327 3 953 2398 192 30 59 chr5 48285615 48286156 -104251103 - RLTR20B3 LTR ERVK -44 533 9 3 953 1847 160 27 12 chr5 48286162 48286497 -104250762 + Lx4A LINE L1 6712 7051 -7 3 953 26 0 0 0 chr5 48286497 48286523 -104250736 + AT_rich Low_complexity Low_complexity 1 26 0 3 953 21625 22 0 15 chr5 48286834 48289126 -104248133 + L1Md_A LINE L1 3013 5303 -580 3 953 5190 74 0 0 chr5 48289126 48289801 -104247458 + L1Md_T LINE L1 5908 6582 0 4 953 21625 22 0 15 chr5 48289801 48290121 -104247138 + L1Md_A LINE L1 5304 5586 -297 3 953 8498 26 1 1 chr5 48290121 48291117 -104246142 + L1Md_A LINE L1 5587 6582 0 3 953 370 14 70 28 chr5 48291265 48291336 -104245923 + (CAAA)n Simple_repeat Simple_repeat 1 74 0 4 953 2948 75 27 0 chr5 48291427 48291838 -104245421 - BGLII_Mus LTR ERVK 0 422 1 4 953 188 353 59 0 chr5 48293618 48293686 -104243573 - MIR SINE MIR -165 97 26 4 953 713 269 78 13 chr5 48294222 48294452 -104242807 - MER121 Unknown Unknown -161 251 7 4 953 216 162 0 0 chr5 48294489 48294526 -104242733 + (CGTG)n Simple_repeat Simple_repeat 1 37 0 4 953 413 311 86 20 chr5 48295438 48295635 -104241624 + LTR82B Low_complexity ERVL 116 325 -505 4 953 233 269 63 21 chr5 48295553 48295648 -104241611 + LTR82A LTR ERVL 274 372 -500 4 953 240 35 0 0 chr5 48295692 48295721 -104241538 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 4 953 335 268 73 0 chr5 48295799 48295881 -104241378 + LTR82B Low_complexity ERVL 485 572 -258 4 953 6889 66 15 9 chr5 48296550 48297457 -104239802 + L1_Mus3 LINE L1 5717 6629 -9 4 953 1244 230 59 35 chr5 48298047 48298385 -104238874 + MTD LTR MaLR 43 388 -31 4 953 327 95 41 31 chr5 48298394 48298492 -104238767 + T-rich Low_complexity Low_complexity 2 100 0 4 953 280 157 0 19 chr5 48298493 48298545 -104238714 + MTD LTR MaLR 371 421 0 4 953 258 196 45 114 chr5 48298908 48298944 -104238315 - Lx9 LINE L1 -118 7526 7493 4 953 2628 46 61 0 chr5 48298944 48299270 -104237989 + ORR1A1 LTR MaLR 1 346 0 4 953 12954 79 6 9 chr5 48299270 48301067 -104236192 + ORR1A1-int LTR MaLR 1 1792 0 4 953 2898 49 0 0 chr5 48301067 48301413 -104235846 + ORR1A1 LTR MaLR 1 346 0 4 953 258 196 45 114 chr5 48301413 48301431 -104235828 - Lx9 LINE L1 -152 7492 7477 4 953 1023 94 0 0 chr5 48301431 48301580 -104235679 + (TA)n Simple_repeat Simple_repeat 1 149 0 4 953 258 196 45 114 chr5 48301580 48301654 -104235605 - Lx9 LINE L1 -168 7476 7406 4 953 189 229 0 0 chr5 48301924 48301972 -104235287 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 4 953 192 158 0 0 chr5 48302125 48302163 -104235096 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 953 780 354 25 11 chr5 48302182 48302456 -104234803 - B4A SINE B4 -7 285 8 4 953 180 228 32 81 chr5 48303577 48303639 -104233620 - L3 LINE CR1 -680 3809 3751 4 953 473 333 43 27 chr5 48304331 48304516 -104232743 - B4A SINE B4 -2 290 103 4 953 348 312 31 23 chr5 48304851 48304979 -104232280 + Lx8 LINE L1 6456 6584 -889 4 953 406 343 89 30 chr5 48305185 48305243 -104232016 + Lx8 LINE L1 6742 6809 -664 4 953 609 49 0 0 chr5 48305243 48305324 -104231935 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 4 953 406 343 89 30 chr5 48305324 48305659 -104231600 + Lx8 LINE L1 6810 7157 -316 4 953 378 315 68 23 chr5 48305736 48305829 -104231430 + Lx8 LINE L1 7156 7256 -217 4 953 245 29 29 0 chr5 48305829 48305863 -104231396 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 953 378 315 68 23 chr5 48305863 48305902 -104231357 + Lx8 LINE L1 7257 7294 -179 4 953 275 379 16 31 chr5 48306396 48306524 -104230735 + L2a LINE L2 3036 3161 -265 4 953 1314 87 21 5 chr5 48306900 48307086 -104230173 + B2_Mm2 SINE B2 1 189 -6 4 953 453 267 97 32 chr5 48307208 48307394 -104229865 + Lx5 LINE L1 6850 7047 -3 4 953 2814 130 41 14 chr5 48307463 48307947 -104229312 - Lx2A1 LINE L1 -4 7004 6508 4 953 423 265 55 62 chr5 48308153 48308298 -104228961 + MLT2B1 LTR ERVL 38 181 -339 4 953 319 125 48 0 chr5 48308349 48308453 -104228806 + (TA)n Simple_repeat Simple_repeat 1 109 0 4 953 234 350 50 0 chr5 48308516 48308596 -104228663 + MLT2B1 LTR ERVL 404 487 -75 4 953 472 325 19 13 chr5 48309207 48309363 -104227896 + B3A SINE B2 4 160 -38 4 953 389 335 64 81 chr5 48310338 48310634 -104226625 - ORR1E LTR MaLR -50 309 19 4 953 3488 66 2 0 chr5 48310642 48311080 -104226179 + L1_Mus1 LINE L1 6129 6567 0 4 953 241 313 72 0 chr5 48311093 48311176 -104226083 + MLT2B2 LTR ERVL 25 113 -402 4 953 330 324 27 47 chr5 48311216 48311365 -104225894 - RSINE1 SINE B4 -16 149 4 4 953 232 321 102 73 chr5 48311368 48311573 -104225686 + MLT2B2 LTR ERVL 105 315 -200 4 953 243 0 0 0 chr5 48312121 48312148 -104225111 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4 953 2848 106 46 5 chr5 48313426 48313862 -104223397 - L1_Mus3 LINE L1 -7 6631 6178 4 953 9451 106 21 2 chr5 48313862 48315594 -104221665 + L1_Mus3 LINE L1 4417 6185 -453 4 953 378 0 0 0 chr5 48316028 48316070 -104221189 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 953 3758 36 45 6 chr5 48316183 48316653 -104220606 - L1Md_F2 LINE L1 0 6582 6095 4 953 578 126 32 0 chr5 48316653 48316748 -104220511 + L1Md_F3 LINE L1 6026 6123 -461 4 953 1920 62 78 0 chr5 48316985 48317242 -104220017 - L1_Mus1 LINE L1 -2 6565 6289 4 953 351 0 0 0 chr5 48317296 48317335 -104219924 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 953 1111 95 0 0 chr5 48317344 48317491 -104219768 - B1_Mus2 SINE Alu 0 147 1 4 953 269 362 61 15 chr5 48317554 48317686 -104219573 + L2a LINE L2 3289 3426 0 4 953 3647 110 40 4 chr5 48318502 48319049 -104218210 - L1_Mus4 LINE L1 -6 6630 6064 4 953 2403 82 31 0 chr5 48320630 48320947 -104216312 - ORR1A2 LTR MaLR 0 327 1 4 953 950 63 127 0 chr5 48321085 48321287 -104215972 + L1Md_F3 LINE L1 6407 6584 0 4 953 23 0 0 0 chr5 48321481 48321504 -104215755 + AT_rich Low_complexity Low_complexity 1 23 0 4 953 575 267 7 7 chr5 48322693 48322829 -104214430 - MTD LTR MaLR -264 155 20 4 953 267 293 0 0 chr5 48323459 48323616 -104213643 + (CA)n Simple_repeat Simple_repeat 2 158 0 4 953 215 252 13 40 chr5 48323604 48323753 -104213506 + (CATA)n Simple_repeat Simple_repeat 1 145 0 4 953 254 285 184 55 chr5 48324127 48324383 -104212876 - L1M5 LINE L1 -470 5770 5482 4 953 198 0 0 0 chr5 48324759 48324781 -104212478 + (A)n Simple_repeat Simple_repeat 1 22 0 4 953 277 300 203 40 chr5 48325326 48325503 -104211756 + ID_B1 SINE B4 1 206 -18 4 953 228 67 0 0 chr5 48325506 48325536 -104211723 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 4 953 438 354 15 0 chr5 48325914 48326044 -104211215 - RSINE1 SINE B4 -30 135 4 4 953 269 294 96 17 chr5 48326295 48326436 -104210823 + MIR SINE MIR 23 178 -90 4 953 338 200 55 152 chr5 48326874 48327039 -104210220 + B1F2 SINE Alu 1 149 0 4 953 234 0 0 0 chr5 48327695 48327721 -104209538 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 953 255 146 0 0 chr5 48327727 48327782 -104209477 + (GA)n Simple_repeat Simple_repeat 1 55 0 4 953 467 33 16 0 chr5 48328706 48328767 -104208492 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 953 375 172 0 39 chr5 48329396 48329499 -104207760 + CT-rich Low_complexity Low_complexity 2 100 0 4 953 333 367 0 0 chr5 48329576 48329696 -104207563 - B1F SINE Alu -22 127 8 4 953 328 261 11 16 chr5 48329798 48329896 -104207363 + ORR1D1 LTR MaLR 301 417 -2 4 953 384 351 36 73 chr5 48330098 48330547 -104206712 - L2a LINE L2 0 3426 2995 4 953 331 183 14 14 chr5 48330596 48330668 -104206591 + ORR1D1 LTR MaLR 301 372 -2 4 953 26 30 0 0 chr5 48331199 48331232 -104206027 + AT_rich Low_complexity Low_complexity 1 33 0 4 953 673 323 35 17 chr5 48331343 48331573 -104205686 + B4A SINE B4 1 234 -58 4 953 624 129 0 0 chr5 48331696 48331797 -104205462 + (GA)n Simple_repeat Simple_repeat 2 102 0 4 953 488 270 20 26 chr5 48332305 48332457 -104204802 + Lx6 LINE L1 7309 7459 -1 4 953 1248 84 157 18 chr5 48333212 48333317 -104203942 - Lx3_Mus LINE L1 0 7009 6892 4 953 198 0 0 0 chr5 48333317 48333339 -104203920 + (CACCC)n Simple_repeat Simple_repeat 3 24 0 4 953 1248 84 157 18 chr5 48333339 48333462 -104203797 - Lx3_Mus LINE L1 -118 6891 6750 4 953 2889 76 0 10 chr5 48333453 48333867 -104203392 + Lx3_Mus LINE L1 5082 5491 -395 4 953 7606 85 19 1 chr5 48333863 48334080 -104203179 + Lx3_Mus LINE L1 5693 5909 -1100 4 953 497 16 0 16 chr5 48334080 48334143 -104203116 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 4 953 7606 85 19 1 chr5 48334143 48335009 -104202250 + Lx3_Mus LINE L1 5910 6794 -215 4 953 726 256 156 116 chr5 48335182 48335543 -104201716 - ORR1D1 LTR MaLR 0 374 6 4 953 21 36 0 0 chr5 48336938 48336966 -104200293 + AT_rich Low_complexity Low_complexity 1 28 0 4 953 339 25 0 0 chr5 48337052 48337092 -104200167 + (TTA)n Simple_repeat Simple_repeat 2 41 0 4 953 1747 152 304 16 chr5 48337152 48337579 -104199680 - RLTR25B LTR ERVK 0 1028 479 4 953 396 0 0 0 chr5 48337591 48337635 -104199624 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 953 204 40 0 0 chr5 48337867 48337892 -104199367 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 953 4247 292 35 29 chr5 48337900 48338707 -104198552 - Lx7 LINE L1 -395 7301 6496 4 953 1107 235 129 18 chr5 48338707 48339040 -104198219 + ORR1D1 LTR MaLR 1 370 -4 4 953 4247 292 35 29 chr5 48339040 48339128 -104198131 - Lx7 LINE L1 -1201 6495 6410 4 953 1435 51 41 10 chr5 48339128 48339325 -104197934 + L1Md_F3 LINE L1 6381 6583 -1 4 953 4247 255 56 78 chr5 48339325 48340590 -104196669 - Lx7 LINE L1 -1287 6409 5171 4 953 668 331 63 55 chr5 48340613 48340977 -104196282 + Zaphod DNA Tip100 1296 1658 -2373 4 953 1030 96 0 0 chr5 48340977 48341113 -104196146 + B1_Mus1 SINE Alu 1 136 -12 4 953 315 0 0 0 chr5 48341114 48341149 -104196110 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 953 668 331 63 55 chr5 48341149 48341306 -104195953 + Zaphod DNA Tip100 1659 1820 -2211 4 953 459 303 6 90 chr5 48341354 48341510 -104195749 + B4A SINE B4 80 222 -70 4 953 1188 35 7 0 chr5 48341512 48341655 -104195604 + B1_Mm SINE Alu 4 147 0 4 953 21 0 0 0 chr5 48341655 48341676 -104195583 + AT_rich Low_complexity Low_complexity 1 21 0 4 953 256 266 0 15 chr5 48341676 48341741 -104195518 + B4A SINE B4 216 279 -13 4 953 302 109 36 0 chr5 48341810 48341865 -104195394 + (GGGAGA)n Simple_repeat Simple_repeat 2 58 0 4 953 656 301 119 88 chr5 48341954 48342758 -104194501 + Zaphod DNA Tip100 1959 2787 -1244 4 953 1132 88 0 0 chr5 48342770 48342917 -104194342 + B1_Mm SINE Alu 1 147 0 4 953 473 0 18 0 chr5 48342925 48342982 -104194277 + (TAAAA)n Simple_repeat Simple_repeat 2 59 0 4 953 448 295 21 35 chr5 48342987 48343131 -104194128 + B3A SINE B2 1 142 -56 4 953 281 274 12 0 chr5 48343131 48343215 -104194044 - Lx6 LINE L1 -126 7334 7250 4 953 4027 114 109 12 chr5 48343224 48343913 -104193346 + RMER6A LTR ERVK 1 756 0 4 953 1720 264 56 0 chr5 48343915 48344347 -104192912 - Lx6 LINE L1 -217 7243 6788 4 953 1758 293 36 13 chr5 48344393 48344942 -104192317 - Lx6 LINE L1 -816 6644 6083 4 953 405 0 0 0 chr5 48345046 48345091 -104192168 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 953 34 42 0 0 chr5 48345268 48345316 -104191943 + AT_rich Low_complexity Low_complexity 1 48 0 4 953 309 361 72 79 chr5 48345771 48346075 -104191184 + MLT1H-int LTR MaLR 931 1232 -177 4 953 745 140 7 7 chr5 48346132 48346283 -104190976 + GA-rich Low_complexity Low_complexity 2 152 0 4 953 1088 323 77 43 chr5 48347655 48348237 -104189022 + Tigger7 DNA MER2_type 1 602 -1889 4 953 348 236 101 28 chr5 48348646 48348755 -104188504 + B3 SINE B2 100 216 0 5 953 5208 68 25 6 chr5 48348823 48349515 -104187744 - L1Md_F2 LINE L1 -14 6568 5864 5 953 355 96 0 0 chr5 48349515 48349567 -104187692 + L1_Mm LINE L1 4868 4919 -964 5 953 222 0 25 50 chr5 48349575 48349615 -104187644 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 953 861 289 65 44 chr5 48350156 48350699 -104186560 - L1MD2 LINE L1 -374 5985 5432 5 953 1445 22 6 0 chr5 48350796 48350975 -104186284 - L1Md_F2 LINE L1 -3 6579 6400 5 953 429 343 87 28 chr5 48351082 48351334 -104185925 - RMER15 LTR ERVL -33 542 276 5 953 405 0 0 0 chr5 48352302 48352347 -104184912 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 953 3950 187 75 35 chr5 48352765 48353717 -104183542 - Lx2B LINE L1 -1 6999 6010 5 953 722 158 30 42 chr5 48353717 48353882 -104183377 + Lx2B LINE L1 5205 5367 -510 5 953 1642 166 10 17 chr5 48353896 48354196 -104183063 - RLTR10E LTR ERVK -13 298 1 5 953 3010 147 2 3 chr5 48354196 48354863 -104182396 + Lx2B LINE L1 5367 6030 -970 5 953 311 275 82 64 chr5 48354863 48355034 -104182225 - L1MD2 LINE L1 -112 6247 6074 5 953 301 276 0 0 chr5 48355429 48355505 -104181754 - L1MDa LINE L1 -3759 2778 2703 5 953 243 0 0 0 chr5 48355539 48355566 -104181693 + (A)n Simple_repeat Simple_repeat 1 27 0 5 953 743 243 56 16 chr5 48355627 48355933 -104181326 - L1MDa LINE L1 -4029 2604 2287 5 953 634 233 64 57 chr5 48355966 48356262 -104180997 - L1MDa LINE L1 -4410 2223 1926 5 953 216 183 0 66 chr5 48356441 48356517 -104180742 + T-rich Low_complexity Low_complexity 4 74 0 5 953 525 32 0 0 chr5 48356531 48356594 -104180665 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 5 953 451 241 0 0 chr5 48357089 48357172 -104180087 + B1_Mur3 SINE Alu 30 112 -37 5 953 212 125 42 0 chr5 48357173 48357221 -104180038 + A-rich Low_complexity Low_complexity 5 54 0 5 953 2722 18 95 6 chr5 48357406 48357743 -104179516 - IAPLTR1_Mm LTR ERVK 0 367 1 5 953 27658 20 1 0 chr5 48357743 48361013 -104176246 - IAPEz-int LTR ERVK 0 6481 3209 5 953 6884 108 87 14 chr5 48361011 48362228 -104175031 - IAPEz-int LTR ERVK -5168 1313 8 5 953 2708 21 95 6 chr5 48362228 48362565 -104174694 - IAPLTR1_Mm LTR ERVK 0 367 1 5 953 2158 101 3 56 chr5 48362582 48362919 -104174340 + ORR1A2 LTR MaLR 1 319 -8 5 953 10386 132 66 10 chr5 48362923 48364779 -104172480 + ORR1A2-int LTR MaLR 1 1959 -4 5 953 2367 87 9 47 chr5 48364783 48365122 -104172137 + ORR1A2 LTR MaLR 1 326 -1 5 953 216 0 0 0 chr5 48365341 48365365 -104171894 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5 954 486 159 0 0 chr5 48366238 48366326 -104170933 + GA-rich Low_complexity Low_complexity 3 90 0 5 954 458 253 77 30 chr5 48367532 48367683 -104169576 - RSINE1 SINE B4 0 165 2 5 954 240 35 0 0 chr5 48368281 48368310 -104168949 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 954 768 198 0 22 chr5 48368356 48368490 -104168769 - B1_Mus2 SINE Alu -16 131 1 5 954 23 0 0 0 chr5 48368508 48368531 -104168728 + AT_rich Low_complexity Low_complexity 1 23 0 5 954 384 22 0 0 chr5 48368611 48368656 -104168603 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 954 219 36 0 0 chr5 48369164 48369192 -104168067 + (A)n Simple_repeat Simple_repeat 1 28 0 5 954 2701 134 59 72 chr5 48369218 48369742 -104167517 - RLTR17 LTR ERVK -77 615 99 5 954 455 189 8 0 chr5 48370088 48370215 -104167044 + GA-rich Low_complexity Low_complexity 3 130 0 5 954 601 231 8 0 chr5 48370220 48370337 -104166922 + PB1D9 SINE Alu 3 120 0 5 954 26 30 0 0 chr5 48370596 48370629 -104166630 + AT_rich Low_complexity Low_complexity 1 33 0 5 954 310 316 67 50 chr5 48370905 48371085 -104166174 - MER5A DNA MER1_type -6 183 1 5 954 200 56 83 0 chr5 48371239 48371275 -104165984 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 954 1122 67 0 0 chr5 48372326 48372491 -104164768 + (CA)n Simple_repeat Simple_repeat 2 166 0 5 954 305 100 20 0 chr5 48373478 48373528 -104163731 + (TGGGGG)n Simple_repeat Simple_repeat 3 53 0 5 954 236 299 79 40 chr5 48374021 48374122 -104163137 + LTR33A LTR ERVL 213 317 -203 5 954 200 200 0 57 chr5 48374301 48374354 -104162905 + G-rich Low_complexity Low_complexity 6 55 0 5 954 180 0 0 0 chr5 48379045 48379065 -104158194 + (T)n Simple_repeat Simple_repeat 1 20 0 5 954 306 0 0 0 chr5 48380176 48380210 -104157049 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 954 375 78 0 0 chr5 48381979 48382030 -104155229 + (T)n Simple_repeat Simple_repeat 1 51 0 5 954 28 0 0 0 chr5 48382478 48382506 -104154753 + AT_rich Low_complexity Low_complexity 1 28 0 5 954 180 0 0 0 chr5 48383237 48383257 -104154002 + (A)n Simple_repeat Simple_repeat 1 20 0 5 954 205 250 170 40 chr5 48384529 48384629 -104152630 + MIRb SINE MIR 48 160 -108 5 954 22 56 0 0 chr5 48388131 48388167 -104149092 + AT_rich Low_complexity Low_complexity 1 36 0 5 954 201 213 0 0 chr5 48388167 48388214 -104149045 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 954 782 176 227 0 chr5 48388307 48388483 -104148776 - B3 SINE B2 0 216 1 5 954 210 321 18 0 chr5 48389420 48389476 -104147783 - L2b LINE L2 -77 3298 3242 5 954 264 30 0 0 chr5 48389823 48389856 -104147403 + (CAA)n Simple_repeat Simple_repeat 2 34 0 5 954 194 0 39 0 chr5 48391507 48391533 -104145726 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 954 450 0 0 0 chr5 48392191 48392241 -104145018 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 954 192 77 0 0 chr5 48392616 48392642 -104144617 + (TGGGGG)n Simple_repeat Simple_repeat 6 31 0 5 954 993 84 0 0 chr5 48392940 48393094 -104144165 + (CA)n Simple_repeat Simple_repeat 2 155 0 5 954 317 318 0 9 chr5 48393910 48394018 -104143241 + CT-rich Low_complexity Low_complexity 2 108 0 5 954 429 260 21 0 chr5 48394019 48394115 -104143144 - B1F SINE Alu -23 126 29 5 954 446 324 7 29 chr5 48397418 48397558 -104139701 - B1F1 SINE Alu -7 142 6 5 954 817 128 14 0 chr5 48399618 48399766 -104137493 + (GGAA)n Simple_repeat Simple_repeat 2 151 0 5 954 318 333 114 22 chr5 48401669 48401853 -104135406 - B4A SINE B4 -90 202 2 5 954 194 128 26 0 chr5 48401944 48401983 -104135276 + T-rich Low_complexity Low_complexity 1 40 0 5 954 380 300 109 29 chr5 48401987 48402162 -104135097 - ID_B1 SINE B4 -31 193 5 5 954 200 75 0 91 chr5 48402335 48402379 -104134880 + T-rich Low_complexity Low_complexity 1 40 0 5 954 1222 87 51 28 chr5 48403197 48403411 -104133848 + Lx3_Mus LINE L1 6791 7009 0 5 954 249 108 0 0 chr5 48404122 48404159 -104133100 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 5 954 540 45 0 0 chr5 48404160 48404227 -104133032 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 5 954 248 286 26 0 chr5 48404227 48404304 -104132955 - RMER30 DNA MER1_type -117 85 7 5 954 876 53 0 0 chr5 48405035 48405149 -104132110 + (TC)n Simple_repeat Simple_repeat 2 115 0 5 954 498 33 0 0 chr5 48406692 48406752 -104130507 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 954 1544 206 70 97 chr5 48407571 48408044 -104129215 - Lx9 LINE L1 -8 7636 7177 5 954 192 111 0 0 chr5 48408838 48408874 -104128385 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 954 351 65 0 0 chr5 48409329 48409375 -104127884 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 954 487 293 75 35 chr5 48409378 48409551 -104127708 - B3A SINE B2 -18 180 1 5 954 262 222 0 22 chr5 48410721 48410813 -104126446 + CT-rich Low_complexity Low_complexity 1 90 0 5 954 234 351 53 18 chr5 48410868 48410981 -104126278 + MIRm SINE MIR 159 275 -1 5 954 227 268 33 99 chr5 48411207 48411298 -104125961 + MLT1A1 LTR MaLR 26 110 -298 5 954 1587 212 87 72 chr5 48411409 48411611 -104125648 - MTD LTR MaLR -10 409 211 5 954 7185 79 57 4 chr5 48411611 48412651 -104124608 - Lx3_Mus LINE L1 0 7009 5915 5 954 1587 212 87 72 chr5 48412651 48412849 -104124410 - MTD LTR MaLR -209 210 3 5 954 288 353 36 43 chr5 48413184 48413323 -104123936 + MLT1A1 LTR MaLR 259 396 -12 5 954 197 369 47 39 chr5 48414557 48414684 -104122575 + MIR SINE MIR 69 196 -66 5 954 1093 68 0 33 chr5 48416315 48416451 -104120808 + B1_Mus2 SINE Alu 2 137 -10 5 954 186 43 0 0 chr5 48416451 48416474 -104120785 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 954 1093 68 0 33 chr5 48416474 48416488 -104120771 + B1_Mus2 SINE Alu 138 147 0 5 954 1085 207 9 5 chr5 48416720 48416938 -104120321 - URR1A DNA MER1_type 0 226 8 5 954 923 132 0 0 chr5 48417107 48417243 -104120016 + B1_Mus1 SINE Alu 1 136 -12 5 954 248 53 26 0 chr5 48417244 48417282 -104119977 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 954 933 210 58 99 chr5 48417357 48417493 -104119766 + RMER1C Other Other 1044 1185 -157 5 954 945 102 6 13 chr5 48417493 48417652 -104119607 + (TTCTC)n Simple_repeat Simple_repeat 2 159 0 5 954 933 210 58 99 chr5 48417652 48417666 -104119593 + RMER1C Other Other 1186 1186 -156 5 954 1036 119 6 11 chr5 48417666 48417844 -104119415 + (TTC)n Simple_repeat Simple_repeat 3 179 0 5 954 933 210 58 99 chr5 48417844 48418004 -104119255 + RMER1C Other Other 1186 1342 0 5 954 21 0 0 0 chr5 48418045 48418066 -104119193 + AT_rich Low_complexity Low_complexity 1 21 0 5 954 228 135 0 0 chr5 48419991 48420028 -104117231 + (TTCTCC)n Simple_repeat Simple_repeat 5 41 0 5 954 289 173 0 0 chr5 48420066 48420118 -104117141 - B1_Mur3 SINE Alu -21 128 77 5 954 21 0 0 0 chr5 48420378 48420399 -104116860 + AT_rich Low_complexity Low_complexity 1 21 0 5 954 1214 202 25 46 chr5 48420562 48420889 -104116370 - Lx7 LINE L1 0 7696 7377 5 954 218 32 0 31 chr5 48421090 48421122 -104116137 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 5 954 492 192 0 0 chr5 48421539 48421638 -104115621 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 954 472 228 34 42 chr5 48421703 48421717 -104115542 + MamRep1161 DNA TcMar 39 156 -801 5 954 522 191 76 0 chr5 48421717 48421822 -104115437 + MamRep1161 DNA Tigger 7 119 -838 5 954 536 207 21 56 chr5 48423064 48423207 -104114052 - Lx7 LINE L1 0 7696 7559 5 954 314 369 43 47 chr5 48424442 48424695 -104112564 + B4A SINE B4 29 280 -12 5 954 498 17 0 0 chr5 48424737 48424796 -104112463 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 954 22 0 0 0 chr5 48425939 48425961 -104111298 + AT_rich Low_complexity Low_complexity 1 22 0 5 954 324 365 73 24 chr5 48428103 48428308 -104108951 + MLT1H2 LTR MaLR 3 217 -272 5 954 213 235 0 0 chr5 48428800 48428851 -104108408 + T-rich Low_complexity Low_complexity 12 62 0 5 954 234 316 145 25 chr5 48431217 48431376 -104105883 + MIRb SINE MIR 19 196 -72 5 954 360 64 0 0 chr5 48431861 48431908 -104105351 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 6 954 2369 203 61 87 chr5 48431929 48432571 -104104688 - RMER20B LTR ERVK 0 627 3 6 954 225 0 0 0 chr5 48432695 48432720 -104104539 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 6 954 226 219 47 0 chr5 48433995 48434059 -104103200 + Lx9 LINE L1 7578 7644 0 6 954 180 200 0 0 chr5 48434468 48434508 -104102751 + CT-rich Low_complexity Low_complexity 2 41 0 6 954 189 107 0 0 chr5 48435358 48435386 -104101873 + (TA)n Simple_repeat Simple_repeat 2 29 0 6 954 183 204 0 0 chr5 48435397 48435446 -104101813 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 954 405 0 0 0 chr5 48435631 48435676 -104101583 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 954 360 0 0 0 chr5 48436112 48436152 -104101107 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 954 402 283 46 42 chr5 48437409 48437649 -104099610 + L1M5 LINE L1 5260 5500 -624 6 954 873 250 28 14 chr5 48438094 48438309 -104098950 - ID_B1 SINE B4 -4 220 3 6 954 225 127 32 127 chr5 48439695 48439758 -104097501 - Tigger6a DNA MER2_type -330 753 697 6 954 203 242 59 29 chr5 48441247 48441315 -104095944 - L2c LINE L2 -17 3370 3301 6 954 396 0 0 0 chr5 48441815 48441859 -104095400 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 954 27 0 0 0 chr5 48441871 48441898 -104095361 + AT_rich Low_complexity Low_complexity 1 27 0 6 954 6774 160 9 37 chr5 48442889 48443462 -104093797 - L1_Mur2 LINE L1 0 5877 5316 6 954 1372 54 32 16 chr5 48443462 48443651 -104093608 + L1_Mus1 LINE L1 6376 6567 0 6 954 6774 160 9 37 chr5 48443651 48444350 -104092909 - L1_Mur2 LINE L1 -562 5315 4641 6 954 1350 225 75 21 chr5 48444388 48444815 -104092444 - Lx9 LINE L1 -8 7636 7187 6 954 237 132 0 0 chr5 48445370 48445408 -104091851 + (T)n Simple_repeat Simple_repeat 1 38 0 6 954 207 100 0 0 chr5 48446131 48446161 -104091098 + (TATG)n Simple_repeat Simple_repeat 2 31 0 6 954 301 330 26 9 chr5 48446168 48446281 -104090978 + RMER12 LTR ERVK 737 851 -471 6 954 245 301 19 46 chr5 48448294 48448402 -104088857 + GA-rich Low_complexity Low_complexity 1 105 0 6 954 588 14 0 0 chr5 48448623 48448692 -104088567 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 6 954 639 287 5 22 chr5 48450678 48450863 -104086396 - B3A SINE B2 -16 182 1 6 954 822 21 0 0 chr5 48451940 48452036 -104085223 + (GA)n Simple_repeat Simple_repeat 1 96 0 6 954 21 0 0 0 chr5 48452432 48452453 -104084806 + AT_rich Low_complexity Low_complexity 1 21 0 6 954 622 300 72 19 chr5 48452742 48453007 -104084252 + B4A SINE B4 2 280 -12 6 954 244 276 0 13 chr5 48453313 48453390 -104083869 + T-rich Low_complexity Low_complexity 5 80 0 6 954 511 264 32 8 chr5 48453767 48453893 -104083366 - B1_Mur2 SINE Alu 0 149 21 6 954 4623 152 39 24 chr5 48454189 48455037 -104082222 - Lx2 LINE L1 -35 6962 6102 6 954 664 324 50 100 chr5 48455108 48455468 -104081791 - MTEa LTR MaLR -23 356 15 6 954 22 0 0 0 chr5 48455841 48455863 -104081396 + AT_rich Low_complexity Low_complexity 1 22 0 6 954 2402 179 2 16 chr5 48456358 48456785 -104080474 + MTC LTR MaLR 1 421 0 6 954 699 262 39 10 chr5 48457263 48457467 -104079792 - B3 SINE B2 -6 210 1 6 954 510 86 0 0 chr5 48459586 48459667 -104077592 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 954 2742 50 3 0 chr5 48459793 48460171 -104077088 - L1Md_F2 LINE L1 0 6582 6220 6 954 661 306 75 13 chr5 48460685 48461003 -104076256 - Lx8 LINE L1 -380 7093 6756 6 954 274 271 83 0 chr5 48461173 48461269 -104075990 - Lx8 LINE L1 -1057 6416 6313 6 954 21 0 0 0 chr5 48462007 48462028 -104075231 + AT_rich Low_complexity Low_complexity 1 21 0 6 954 231 103 0 0 chr5 48463446 48463485 -104073774 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 6 954 442 374 37 0 chr5 48463848 48464038 -104073221 - MER20 DNA MER1_type 0 219 23 6 954 29 47 0 0 chr5 48464417 48464460 -104072799 + AT_rich Low_complexity Low_complexity 1 43 0 6 954 216 158 0 0 chr5 48464697 48464735 -104072524 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 954 3430 176 57 35 chr5 48464952 48465693 -104071566 + Lx2B LINE L1 6242 6998 -2 6 954 550 307 171 26 chr5 48466230 48466658 -104070601 - MER119 DNA MER1_type -87 496 7 6 954 215 241 0 18 chr5 48470653 48470708 -104066551 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 954 24 0 0 0 chr5 48470851 48470875 -104066384 + AT_rich Low_complexity Low_complexity 1 24 0 6 954 207 0 0 0 chr5 48471289 48471312 -104065947 + (TAA)n Simple_repeat Simple_repeat 1 23 0 6 954 579 314 28 52 chr5 48471409 48471695 -104065564 + Lx7 LINE L1 7060 7338 -358 6 954 233 352 68 53 chr5 48471970 48472102 -104065157 - RSINE1 SINE B4 -29 136 3 6 954 288 43 22 0 chr5 48475734 48475780 -104061479 + B1_Mus2 SINE Alu 101 147 0 6 954 3061 261 78 17 chr5 48476946 48477435 -104059824 + Lx6 LINE L1 6213 6749 -711 6 954 682 221 7 14 chr5 48477435 48477569 -104059690 + B1_Mm SINE Alu 2 135 -12 6 954 197 33 0 32 chr5 48477569 48477600 -104059659 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 6 954 682 221 7 14 chr5 48477600 48477612 -104059647 + B1_Mm SINE Alu 136 147 0 6 954 3061 261 78 17 chr5 48477612 48477992 -104059267 + Lx6 LINE L1 6750 7135 -325 6 954 281 187 163 11 chr5 48477985 48478077 -104059182 + Lx7 LINE L1 7416 7521 -175 6 954 311 321 184 0 chr5 48478511 48478620 -104058639 - ID_B1 SINE B4 -56 168 40 6 954 321 68 0 0 chr5 48482070 48482114 -104055145 + (TTTTC)n Simple_repeat Simple_repeat 5 48 0 6 954 192 216 0 0 chr5 48483286 48483337 -104053922 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 954 31 0 0 0 chr5 48484701 48484732 -104052527 + AT_rich Low_complexity Low_complexity 1 31 0 6 954 339 85 0 0 chr5 48486522 48486569 -104050690 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 6 954 808 52 29 7 chr5 48486933 48487069 -104050190 + (TG)n Simple_repeat Simple_repeat 1 139 0 6 954 340 364 47 50 chr5 48489272 48489608 -104047651 - MLT1C LTR MaLR -9 458 57 6 954 1191 85 0 0 chr5 48489689 48489854 -104047405 + (GGAGAA)n Simple_repeat Simple_repeat 5 169 0 6 954 423 0 0 0 chr5 48489854 48489901 -104047358 + (TAG)n Simple_repeat Simple_repeat 1 47 0 6 954 372 43 0 0 chr5 48489990 48490036 -104047223 + (TATG)n Simple_repeat Simple_repeat 2 47 0 6 954 498 61 0 0 chr5 48490716 48490782 -104046477 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 954 271 291 50 86 chr5 48490813 48490952 -104046307 - B4 SINE B4 -64 228 95 6 954 718 340 68 21 chr5 48491654 48492094 -104045165 - Charlie1b DNA MER1_type -56 467 3 6 954 201 138 0 0 chr5 48492140 48492169 -104045090 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 954 729 291 21 46 chr5 48492195 48492476 -104044783 - B4 SINE B4 -18 274 1 6 954 21 0 0 0 chr5 48493363 48493384 -104043875 + AT_rich Low_complexity Low_complexity 1 21 0 6 954 22 56 0 0 chr5 48493984 48494020 -104043239 + AT_rich Low_complexity Low_complexity 1 36 0 6 954 896 134 12 12 chr5 48495466 48495639 -104041620 + GA-rich Low_complexity Low_complexity 4 176 0 6 954 439 141 0 14 chr5 48495639 48495711 -104041548 + A-rich Low_complexity Low_complexity 5 75 0 6 954 306 260 76 9 chr5 48496008 48496113 -104041146 + L1MC LINE L1 5561 5672 -672 6 954 318 50 0 0 chr5 48496122 48496162 -104041097 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 119 442 364 99 37 chr5 48496357 48497346 -104039913 + L1M5 LINE L1 4072 5121 -1025 6 955 307 296 126 5 chr5 48498001 48498191 -104039068 + L1ME1 LINE L1 5912 6124 -55 6 955 185 267 86 75 chr5 48498527 48498620 -104038639 + L3 LINE CR1 1019 1112 -3377 6 955 202 369 0 28 chr5 48498844 48498950 -104038309 + L2a LINE L2 3324 3426 0 6 955 31 0 0 0 chr5 48498950 48498981 -104038278 + AT_rich Low_complexity Low_complexity 1 31 0 6 955 417 344 64 0 chr5 48499697 48499822 -104037437 + B1F SINE Alu 14 146 -3 6 955 259 276 13 38 chr5 48500003 48500082 -104037177 + Tigger15a DNA TcMar 203 279 -436 1 955 668 296 16 41 chr5 48500280 48500474 -104036785 + B3A SINE B2 3 191 -7 2 955 375 319 199 5 chr5 48501163 48501374 -104035885 + B4A SINE B4 2 253 -39 3 955 536 228 0 13 chr5 48501777 48501928 -104035331 + GA-rich Low_complexity Low_complexity 3 151 0 4 955 288 53 0 0 chr5 48501951 48501989 -104035270 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 955 316 345 16 90 chr5 48502423 48502611 -104034648 + MLT1E2 LTR MaLR 324 497 -130 6 955 372 229 0 0 chr5 48502834 48502904 -104034355 - B3 SINE B2 -143 73 4 7 955 239 256 116 0 chr5 48503021 48503142 -104034117 + L1MD LINE L1 5194 5328 -818 8 955 21 82 0 0 chr5 48503543 48503592 -104033667 + AT_rich Low_complexity Low_complexity 1 49 0 9 955 203 0 37 0 chr5 48503721 48503748 -104033511 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 955 273 268 23 47 chr5 48503878 48503964 -104033295 - B1_Mur1 SINE Alu -36 113 30 1 955 237 324 98 7 chr5 48504028 48504171 -104033088 + RMER12 LTR ERVK 701 856 -466 1 955 22 0 0 0 chr5 48505732 48505754 -104031505 + AT_rich Low_complexity Low_complexity 1 22 0 1 955 315 0 0 0 chr5 48507439 48507474 -104029785 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 955 602 233 21 57 chr5 48507474 48507615 -104029644 - B1_Mur1 SINE Alu -10 139 4 1 955 327 25 0 0 chr5 48508094 48508134 -104029125 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1 955 345 351 30 0 chr5 48509020 48509154 -104028105 + MIR SINE MIR 32 169 -93 1 955 262 312 0 13 chr5 48509157 48509235 -104028024 + B3A SINE B2 57 133 -65 1 955 21 57 0 0 chr5 48510249 48510284 -104026975 + AT_rich Low_complexity Low_complexity 1 35 0 1 955 618 241 42 24 chr5 48511291 48511457 -104025802 - B3A SINE B2 0 198 30 2 955 312 191 0 0 chr5 48513310 48513373 -104023886 - L1MA5 LINE L1 -315 5985 5923 2 955 951 148 0 25 chr5 48515459 48515700 -104021559 + CT-rich Low_complexity Low_complexity 1 234 0 2 955 978 128 0 28 chr5 48515720 48515865 -104021394 - B1_Mur4 SINE Alu -9 141 1 2 955 2571 110 71 2 chr5 48517013 48517424 -104019835 - Lx3B LINE L1 -3 6970 6532 2 955 272 27 27 0 chr5 48518300 48518337 -104018922 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2 955 1145 82 0 0 chr5 48519992 48520139 -104017120 + B1_Mm SINE Alu 1 147 0 2 955 26 30 0 0 chr5 48520190 48520223 -104017036 + AT_rich Low_complexity Low_complexity 1 33 0 2 955 788 282 1 13 chr5 48520394 48520615 -104016644 - B3A SINE B2 -4 212 1 2 955 2701 52 14 3 chr5 48524297 48524646 -104012613 - L1Md_F2 LINE L1 0 6582 6230 2 955 42 48 0 0 chr5 48524663 48524726 -104012533 + AT_rich Low_complexity Low_complexity 1 63 0 3 955 846 293 43 0 chr5 48525116 48525372 -104011887 - Lx9 LINE L1 -892 6752 6486 3 955 21 0 0 0 chr5 48526331 48526352 -104010907 + AT_rich Low_complexity Low_complexity 1 21 0 3 955 210 176 0 0 chr5 48526569 48526603 -104010656 - MIRc SINE MIR -90 178 145 3 955 347 351 58 22 chr5 48527044 48527181 -104010078 - RSINE1 SINE B4 -3 162 21 3 955 24 32 0 0 chr5 48527507 48527538 -104009721 + AT_rich Low_complexity Low_complexity 1 31 0 3 955 215 170 21 0 chr5 48528481 48528528 -104008731 + (TTG)n Simple_repeat Simple_repeat 2 49 0 3 955 21 0 0 0 chr5 48528541 48528562 -104008697 + AT_rich Low_complexity Low_complexity 1 21 0 3 955 341 78 20 0 chr5 48529254 48529305 -104007954 - MYSERV6-int LTR ERVK -2077 6882 6831 3 955 435 52 0 0 chr5 48529605 48529663 -104007596 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 955 414 0 0 0 chr5 48530603 48530649 -104006610 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 955 255 154 0 0 chr5 48534315 48534380 -104002879 + T-rich Low_complexity Low_complexity 3 67 0 4 955 328 292 41 16 chr5 48534532 48534654 -104002605 + MIRb SINE MIR 141 265 -3 4 955 237 306 153 32 chr5 48534718 48535065 -104002194 + L2 LINE L2 2371 2759 -660 4 955 429 20 0 0 chr5 48535386 48535436 -104001823 + (TTG)n Simple_repeat Simple_repeat 2 51 0 4 955 1034 269 84 55 chr5 48536235 48536687 -104000572 - MLT1C LTR MaLR 0 467 3 4 955 249 108 0 0 chr5 48537197 48537234 -104000025 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 4 955 279 0 0 0 chr5 48540443 48540474 -103996785 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 4 955 3897 141 44 0 chr5 48541022 48541659 -103995600 - Lx2A1 LINE L1 -6 7002 6338 4 955 228 35 0 0 chr5 48542535 48542564 -103994695 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 955 1192 48 0 0 chr5 48543471 48543618 -103993641 + B1_Mus2 SINE Alu 1 147 0 5 955 252 0 0 0 chr5 48543819 48543847 -103993412 + (TAA)n Simple_repeat Simple_repeat 2 29 0 5 955 328 137 32 64 chr5 48544518 48544643 -103992616 + (CAGAGA)n Simple_repeat Simple_repeat 2 122 0 5 955 207 260 0 61 chr5 48544659 48544741 -103992518 + (CAGAGA)n Simple_repeat Simple_repeat 1 77 0 5 955 792 55 0 0 chr5 48544753 48544863 -103992396 + (GA)n Simple_repeat Simple_repeat 2 111 0 5 955 29 0 0 0 chr5 48545393 48545422 -103991837 + AT_rich Low_complexity Low_complexity 1 29 0 5 955 435 124 20 49 chr5 48545945 48546047 -103991212 + Lx4A LINE L1 6957 7055 -3 5 955 333 0 0 0 chr5 48547008 48547045 -103990214 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 955 24 32 0 0 chr5 48548913 48548944 -103988315 + AT_rich Low_complexity Low_complexity 1 31 0 5 955 22 56 0 0 chr5 48549229 48549265 -103987994 + AT_rich Low_complexity Low_complexity 1 36 0 5 955 820 163 12 0 chr5 48549511 48549683 -103987576 + GA-rich Low_complexity Low_complexity 1 174 0 5 955 585 296 116 22 chr5 48549783 48550059 -103987200 - Lx7 LINE L1 -486 7210 6909 6 955 312 364 50 54 chr5 48550130 48550391 -103986868 - L1MC LINE L1 -2193 5689 5430 6 955 2048 294 96 37 chr5 48550401 48551247 -103986012 - Lx7 LINE L1 -775 6921 6026 6 955 292 294 53 38 chr5 48552524 48552655 -103984604 + B1F SINE Alu 17 149 0 6 955 493 301 58 7 chr5 48552659 48552813 -103984446 + RSINE1 SINE B4 4 165 0 6 955 984 287 162 3 chr5 48553061 48553376 -103983883 + MTD LTR MaLR 5 369 -50 6 955 234 274 58 108 chr5 48553424 48553511 -103983748 + B3 SINE B2 85 175 -41 6 955 240 35 0 0 chr5 48553511 48553540 -103983719 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 955 234 274 58 108 chr5 48553540 48553591 -103983668 + B3 SINE B2 176 216 0 6 955 31 68 0 0 chr5 48553630 48553689 -103983570 + AT_rich Low_complexity Low_complexity 1 59 0 6 955 1989 184 22 19 chr5 48553701 48554116 -103983143 + Lx LINE L1 6229 6644 -10 6 955 585 0 0 0 chr5 48554118 48554183 -103983076 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 6 955 3212 140 7 26 chr5 48554494 48555035 -103982224 + Lx3C LINE L1 6439 6969 -7 7 955 22 56 0 0 chr5 48555382 48555418 -103981841 + AT_rich Low_complexity Low_complexity 1 36 0 7 955 254 259 93 0 chr5 48555431 48555539 -103981720 + L1MB3 LINE L1 6051 6168 -15 7 955 210 355 51 62 chr5 48556033 48556210 -103981049 + MIRb SINE MIR 26 200 -68 7 955 225 321 79 22 chr5 48556503 48556618 -103980641 - L2a LINE L2 -332 3094 2972 7 955 249 250 0 0 chr5 48557140 48557196 -103980063 + GA-rich Low_complexity Low_complexity 1 56 0 7 955 791 283 5 0 chr5 48557499 48557697 -103979562 + B3 SINE B2 2 200 -16 7 955 261 0 0 0 chr5 48558560 48558589 -103978670 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 955 721 78 204 7 chr5 48558642 48558784 -103978475 + L1_Mus3 LINE L1 6469 6638 0 7 955 378 0 0 0 chr5 48559829 48559871 -103977388 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 955 312 200 0 0 chr5 48560102 48560167 -103977092 + CT-rich Low_complexity Low_complexity 2 66 0 8 955 265 318 160 49 chr5 48560274 48560499 -103976760 + MamSINE1 SINE tRNA 17 266 -24 8 955 189 0 0 0 chr5 48564248 48564269 -103972990 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 8 955 182 293 35 0 chr5 48564740 48564798 -103972461 - L3b LINE CR1 -85 397 338 8 955 24 0 0 0 chr5 48564807 48564831 -103972428 + AT_rich Low_complexity Low_complexity 1 24 0 8 955 225 139 0 0 chr5 48565801 48565844 -103971415 + (A)n Simple_repeat Simple_repeat 1 43 0 8 955 1336 271 99 17 chr5 48566705 48567107 -103970152 - Lx5 LINE L1 -62 6988 6554 8 955 399 265 24 0 chr5 48568190 48568210 -103969049 - ID_B1 SINE B4 -130 94 10 8 955 404 191 0 0 chr5 48568210 48568273 -103968986 - ID4_ SINE ID -11 72 10 8 955 26 0 0 0 chr5 48569066 48569092 -103968167 + AT_rich Low_complexity Low_complexity 1 26 0 8 955 24 0 0 0 chr5 48569443 48569467 -103967792 + AT_rich Low_complexity Low_complexity 1 24 0 9 955 1706 59 9 0 chr5 48572029 48572251 -103965008 + L1_Mus2 LINE L1 6342 6565 -1 9 955 207 0 0 0 chr5 48573784 48573807 -103963452 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 9 955 23 0 0 0 chr5 48574816 48574839 -103962420 + AT_rich Low_complexity Low_complexity 1 23 0 9 955 23 0 0 0 chr5 48578757 48578780 -103958479 + AT_rich Low_complexity Low_complexity 1 23 0 9 955 279 324 27 20 chr5 48578787 48578935 -103958324 + B1F1 SINE Alu 1 149 0 9 955 323 321 7 35 chr5 48579972 48580117 -103957142 + GA-rich Low_complexity Low_complexity 4 144 0 9 955 270 0 0 0 chr5 48580332 48580362 -103956897 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 9 955 180 0 0 0 chr5 48580362 48580382 -103956877 + (GTTTG)n Simple_repeat Simple_repeat 3 22 0 9 955 225 145 48 0 chr5 48581508 48581570 -103955689 + (TA)n Simple_repeat Simple_repeat 1 65 0 9 955 277 297 14 0 chr5 48581598 48581672 -103955587 - ID4 SINE ID -1 82 8 1 955 1114 118 42 16 chr5 48582979 48583169 -103954090 + B2_Mm2 SINE B2 1 195 0 1 955 202 194 0 0 chr5 48583389 48583425 -103953834 + CT-rich Low_complexity Low_complexity 1 36 0 1 955 392 55 18 0 chr5 48585174 48585229 -103952030 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 955 668 277 8 43 chr5 48585249 48585502 -103951757 - L1MA4 LINE L1 -361 5939 5696 1 955 432 0 0 0 chr5 48586912 48586960 -103950299 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 955 25 0 0 0 chr5 48588024 48588049 -103949210 + AT_rich Low_complexity Low_complexity 1 25 0 1 955 341 330 87 14 chr5 48588279 48588497 -103948762 - Lx8 LINE L1 -34 7439 7206 1 955 25 65 0 0 chr5 48588938 48588984 -103948275 + AT_rich Low_complexity Low_complexity 1 46 0 1 955 297 214 80 45 chr5 48589653 48589741 -103947518 - PB1D7 SINE Alu -3 117 27 1 955 351 145 0 0 chr5 48589749 48589832 -103947427 + (CAGA)n Simple_repeat Simple_repeat 4 86 0 1 955 675 136 0 0 chr5 48589827 48589937 -103947322 + (CATATA)n Simple_repeat Simple_repeat 4 113 0 1 955 4224 273 72 4 chr5 48589942 48590593 -103946666 - Lx6 LINE L1 -19 7441 6753 1 955 207 69 0 0 chr5 48590593 48590622 -103946637 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 955 4224 273 72 4 chr5 48590622 48591171 -103946088 - Lx6 LINE L1 -708 6752 6160 1 955 21 0 0 0 chr5 48592162 48592183 -103945076 + AT_rich Low_complexity Low_complexity 1 21 0 1 955 23 0 0 0 chr5 48592446 48592469 -103944790 + AT_rich Low_complexity Low_complexity 1 23 0 1 955 21 0 0 0 chr5 48593140 48593161 -103944098 + AT_rich Low_complexity Low_complexity 1 21 0 1 955 485 134 36 0 chr5 48594641 48594753 -103942506 + (TAGA)n Simple_repeat Simple_repeat 1 116 0 1 955 198 0 0 0 chr5 48594812 48594834 -103942425 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1 955 180 0 0 0 chr5 48596878 48596898 -103940361 + (CTTAT)n Simple_repeat Simple_repeat 3 22 0 1 955 29 28 0 0 chr5 48596995 48597031 -103940228 + AT_rich Low_complexity Low_complexity 1 36 0 1 955 315 0 0 0 chr5 48597187 48597222 -103940037 + (A)n Simple_repeat Simple_repeat 1 35 0 1 955 21 0 0 0 chr5 48598138 48598159 -103939100 + AT_rich Low_complexity Low_complexity 1 21 0 1 955 223 354 52 17 chr5 48598317 48598432 -103938827 + B4A SINE B4 2 120 -172 1 955 333 0 0 0 chr5 48598755 48598792 -103938467 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 1 955 1141 106 16 16 chr5 48598908 48599090 -103938169 + B2_Mm1t SINE B2 2 183 -10 1 955 35 0 0 0 chr5 48599091 48599126 -103938133 + AT_rich Low_complexity Low_complexity 1 35 0 1 955 450 0 0 0 chr5 48599382 48599432 -103937827 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 955 659 303 5 50 chr5 48599499 48599697 -103937562 - B3A SINE B2 -9 189 1 1 955 499 296 103 52 chr5 48599697 48599916 -103937343 - B4A SINE B4 -59 233 3 1 955 293 329 20 7 chr5 48600005 48600152 -103937107 + (TATATG)n Simple_repeat Simple_repeat 4 152 0 1 955 24 0 0 0 chr5 48600295 48600319 -103936940 + AT_rich Low_complexity Low_complexity 1 24 0 1 955 318 344 135 57 chr5 48600319 48600397 -103936862 - LTR33A LTR ERVL -250 270 195 1 955 5223 49 0 0 chr5 48600397 48601031 -103936228 + L1Md_F2 LINE L1 5937 6570 -12 1 955 318 344 135 57 chr5 48601031 48601196 -103936063 - LTR33A LTR ERVL -326 194 8 1 955 222 62 0 0 chr5 48602718 48602750 -103934509 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 955 30 69 0 0 chr5 48603585 48603643 -103933616 + AT_rich Low_complexity Low_complexity 1 58 0 1 955 242 56 28 0 chr5 48603713 48603749 -103933510 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 955 215 211 75 50 chr5 48603806 48603886 -103933373 - B4 SINE B4 -208 84 3 1 955 374 238 141 45 chr5 48605512 48605710 -103931549 + Lx8 LINE L1 7227 7443 -30 1 955 360 0 0 0 chr5 48606010 48606050 -103931209 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 955 357 43 0 0 chr5 48607311 48607358 -103929901 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 955 237 132 0 0 chr5 48608554 48608592 -103928667 + (TATG)n Simple_repeat Simple_repeat 3 40 0 1 955 220 150 25 0 chr5 48608606 48608646 -103928613 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 955 201 125 0 48 chr5 48610025 48610067 -103927192 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 955 534 129 0 0 chr5 48610095 48610180 -103927079 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 955 201 240 182 83 chr5 48610401 48610533 -103926726 - L2 LINE L2 -505 2914 2770 1 955 254 29 29 0 chr5 48612424 48612459 -103924800 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1 955 22 0 0 0 chr5 48613419 48613441 -103923818 + AT_rich Low_complexity Low_complexity 1 22 0 1 955 735 78 0 0 chr5 48614593 48614696 -103922563 + (TG)n Simple_repeat Simple_repeat 2 104 0 1 955 21 0 0 0 chr5 48616645 48616666 -103920593 + AT_rich Low_complexity Low_complexity 1 21 0 1 955 831 323 99 22 chr5 48617635 48617958 -103919301 - ORR1E LTR MaLR -7 352 5 1 955 388 279 206 7 chr5 48617943 48618098 -103919161 - ORR1D2-int LTR MaLR -34 1546 1361 1 955 772 70 0 37 chr5 48618100 48618234 -103919025 + (GGGA)n Simple_repeat Simple_repeat 4 132 0 1 955 1383 22 0 22 chr5 48618234 48618416 -103918843 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 1 955 2608 328 72 76 chr5 48618426 48619638 -103917621 - ORR1D2-int LTR MaLR -242 1338 60 1 955 342 0 0 0 chr5 48619638 48619676 -103917583 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 955 566 324 41 117 chr5 48619676 48619723 -103917536 - ORR1D2-int LTR MaLR -1904 59 17 1 955 293 229 116 25 chr5 48619815 48619936 -103917323 - ORR1D2 LTR MaLR -23 351 220 1 955 489 217 117 0 chr5 48619992 48620112 -103917147 - ORR1D2 LTR MaLR -235 135 2 1 955 236 291 136 45 chr5 48620175 48620202 -103917057 + L1M4 LINE L1 5569 5598 -693 1 955 189 0 0 0 chr5 48620202 48620223 -103917036 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 955 309 273 108 23 chr5 48620223 48620454 -103916805 + L1M4 LINE L1 5599 5855 -319 1 955 653 267 14 89 chr5 48620472 48620686 -103916573 + B3A SINE B2 1 198 0 1 955 282 409 14 27 chr5 48620950 48621096 -103916163 - B1F2 SINE Alu -5 144 1 1 955 21 0 0 0 chr5 48621297 48621318 -103915941 + AT_rich Low_complexity Low_complexity 1 21 0 1 955 21 57 0 0 chr5 48621388 48621423 -103915836 + AT_rich Low_complexity Low_complexity 1 35 0 1 955 204 40 0 0 chr5 48622290 48622315 -103914944 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 1 955 285 223 168 8 chr5 48622319 48622450 -103914809 - Lx2B LINE L1 -36 6964 6813 1 955 380 344 93 7 chr5 48622674 48622875 -103914384 + B4 SINE B4 10 220 -72 1 955 198 0 0 0 chr5 48623953 48623975 -103913284 + (CAAAAA)n Simple_repeat Simple_repeat 1 22 0 1 955 253 240 133 0 chr5 48624582 48624657 -103912602 - MLT1B LTR MaLR -302 88 4 1 955 1412 272 52 30 chr5 48625305 48625707 -103911552 - MTD LTR MaLR -8 411 1 1 955 884 223 4 111 chr5 48626746 48626998 -103910261 - URR1B DNA MER1_type 0 225 1 1 956 869 291 82 44 chr5 48629764 48630106 -103907153 - MTE2a LTR MaLR -2 377 23 1 956 232 234 43 0 chr5 48630449 48630496 -103906763 - Charlie14a DNA MER1_type -1115 49 1 1 956 708 124 0 0 chr5 48631289 48631394 -103905865 + B2_Mm2 SINE B2 9 113 -82 1 956 2679 70 0 11 chr5 48632241 48632601 -103904658 + L1Md_F2 LINE L1 6214 6569 -13 1 956 264 127 0 0 chr5 48632863 48632918 -103904341 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 956 210 71 0 0 chr5 48633324 48633352 -103903907 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 956 423 0 0 0 chr5 48634677 48634724 -103902535 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 956 27 0 0 0 chr5 48635123 48635150 -103902109 + AT_rich Low_complexity Low_complexity 1 27 0 1 956 228 246 70 0 chr5 48635455 48635512 -103901747 - L2a LINE L2 -4 3422 3362 1 956 198 0 0 0 chr5 48635729 48635751 -103901508 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 956 1338 195 78 98 chr5 48636175 48636561 -103900698 - ORR1C1 LTR MaLR 0 378 1 1 956 230 306 72 7 chr5 48638184 48638322 -103898937 - L1M2 LINE L1 -1117 5026 4880 1 956 599 0 14 0 chr5 48638951 48639022 -103898237 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 1 956 203 237 42 31 chr5 48639023 48639119 -103898140 + (CATATA)n Simple_repeat Simple_repeat 3 99 0 1 956 25 31 0 0 chr5 48640192 48640224 -103897035 + AT_rich Low_complexity Low_complexity 1 32 0 1 956 659 318 69 23 chr5 48642302 48642518 -103894741 + B4 SINE B4 4 229 -63 1 956 774 346 19 4 chr5 48642566 48642824 -103894435 + B4A SINE B4 29 290 -2 1 956 229 197 30 0 chr5 48644807 48644873 -103892386 + GA-rich Low_complexity Low_complexity 5 72 0 1 956 188 260 20 0 chr5 48645941 48645991 -103891268 + L2c LINE L2 3331 3381 -6 1 956 262 165 21 21 chr5 48646702 48646795 -103890464 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 1 956 1429 300 24 0 chr5 48647212 48647629 -103889630 + Lx9 LINE L1 6637 7063 -581 1 956 944 269 91 9 chr5 48648688 48649007 -103888252 - Lx6 LINE L1 -100 7360 7016 1 956 554 311 0 62 chr5 48649530 48649708 -103887551 - B3A SINE B2 -16 182 16 1 956 801 297 17 9 chr5 48649708 48649939 -103887320 + Lx8 LINE L1 7108 7340 -133 1 956 459 0 0 0 chr5 48650234 48650285 -103886974 + (TAAA)n Simple_repeat Simple_repeat 1 51 0 1 956 671 151 28 14 chr5 48650423 48650564 -103886695 - RLTR31_Mm LTR ERVK -418 143 1 1 956 334 278 38 0 chr5 48652029 48652162 -103885097 + (TAGA)n Simple_repeat Simple_repeat 1 138 0 1 956 24 67 0 0 chr5 48655356 48655401 -103881858 + AT_rich Low_complexity Low_complexity 1 45 0 1 956 253 347 13 0 chr5 48655410 48655485 -103881774 + ID4 SINE ID 6 81 -2 1 956 198 103 0 0 chr5 48655505 48655534 -103881725 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 956 523 321 83 83 chr5 48658893 48659098 -103878161 + MER2 DNA MER2_type 1 220 -125 1 956 434 318 78 0 chr5 48659098 48659255 -103878004 + B3A SINE B2 1 171 -27 1 956 423 0 0 0 chr5 48659255 48659302 -103877957 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 956 434 318 78 0 chr5 48659302 48659323 -103877936 + B3A SINE B2 172 192 -6 1 956 523 321 83 83 chr5 48659323 48659382 -103877877 + MER2 DNA MER2_type 221 265 -80 1 956 2879 192 46 34 chr5 48661020 48661224 -103876035 + Lx9 LINE L1 6955 7150 -494 2 956 1379 70 27 0 chr5 48661224 48661409 -103875850 + B2_Mm2 SINE B2 2 191 -4 2 956 2879 192 46 34 chr5 48661409 48661879 -103875380 + Lx9 LINE L1 7151 7637 -7 2 956 306 0 0 0 chr5 48662687 48662721 -103874538 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 956 258 340 105 19 chr5 48662830 48662935 -103874324 - MER94 DNA AcHobo -5 129 16 2 956 204 40 0 0 chr5 48663180 48663205 -103874054 + (TAA)n Simple_repeat Simple_repeat 2 26 0 2 956 378 0 0 0 chr5 48664537 48664579 -103872680 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2 956 21 0 0 0 chr5 48665595 48665616 -103871643 + AT_rich Low_complexity Low_complexity 1 21 0 2 956 228 130 0 0 chr5 48665963 48666009 -103871250 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 956 204 127 36 18 chr5 48666010 48666066 -103871193 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 956 465 19 0 0 chr5 48666067 48666121 -103871138 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 956 273 234 89 137 chr5 48667593 48667717 -103869542 - MIR3 SINE MIR -105 171 54 2 956 200 56 83 0 chr5 48668095 48668131 -103869128 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 2 956 279 0 0 0 chr5 48668496 48668527 -103868732 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 956 324 0 0 0 chr5 48669382 48669418 -103867841 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 956 189 0 0 0 chr5 48669453 48669474 -103867785 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 956 362 83 0 0 chr5 48669513 48669561 -103867698 - HAL1-3A_ME LINE L1 -840 2018 1971 2 956 33 43 0 0 chr5 48670208 48670255 -103867004 + AT_rich Low_complexity Low_complexity 1 47 0 2 956 863 288 67 85 chr5 48670424 48670800 -103866459 - MTE2a LTR MaLR -10 369 1 2 956 331 192 26 0 chr5 48670800 48670878 -103866381 + L1MA9 LINE L1 6176 6255 -57 2 956 180 176 0 0 chr5 48671010 48671044 -103866215 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 2 956 537 293 68 27 chr5 48671261 48671524 -103865735 - Tigger7 DNA MER2_type -49 2442 2169 2 956 285 98 0 0 chr5 48672264 48672305 -103864954 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 2 956 327 373 84 84 chr5 48674889 48675246 -103862013 - MLT1A1 LTR MaLR -20 388 32 2 956 539 235 98 0 chr5 48675631 48675763 -103861496 - B1_Mus2 SINE Alu -2 145 1 2 956 32 57 0 0 chr5 48676673 48676726 -103860533 + AT_rich Low_complexity Low_complexity 1 53 0 2 956 726 216 0 26 chr5 48676830 48676982 -103860277 + B1_Mur2 SINE Alu 2 149 0 2 956 27 49 0 0 chr5 48678481 48678522 -103858737 + AT_rich Low_complexity Low_complexity 1 41 0 2 956 22 0 0 0 chr5 48678567 48678589 -103858670 + AT_rich Low_complexity Low_complexity 1 22 0 2 956 306 313 71 45 chr5 48678865 48679019 -103858240 + MER63B DNA AcHobo 277 434 -2 2 956 264 296 0 12 chr5 48679570 48679652 -103857607 + GA-rich Low_complexity Low_complexity 3 83 0 2 956 198 310 0 121 chr5 48682010 48682109 -103855150 - L2c LINE L2 -20 3367 3281 2 956 33 0 0 0 chr5 48682855 48682888 -103854371 + AT_rich Low_complexity Low_complexity 1 33 0 2 956 1254 213 82 4 chr5 48682907 48683176 -103854083 - Lx2B LINE L1 -20 6980 6691 2 956 2296 209 87 140 chr5 48683291 48683789 -103853470 - Lx9 LINE L1 -30 7614 7171 2 956 2743 141 19 17 chr5 48683789 48684252 -103853007 - Lx3B LINE L1 -4 6969 6506 2 956 2296 209 87 140 chr5 48684252 48684737 -103852522 - Lx9 LINE L1 -474 7170 6683 2 956 409 306 92 104 chr5 48684920 48685084 -103852175 - RSINE1 SINE B4 -1 164 3 2 956 279 54 0 0 chr5 48685158 48685195 -103852064 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 956 513 76 0 0 chr5 48685195 48685274 -103851985 + (GA)n Simple_repeat Simple_repeat 2 80 0 2 956 617 333 73 18 chr5 48685302 48685577 -103851682 - B4A SINE B4 0 292 3 2 956 463 17 0 0 chr5 48686368 48686426 -103850833 - L1_Mus2 LINE L1 -1 6565 6508 2 956 2958 72 10 13 chr5 48686424 48686818 -103850441 + L1_Mus2 LINE L1 6165 6557 -9 2 956 431 18 18 0 chr5 48686883 48686939 -103850320 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 956 363 207 24 0 chr5 48686949 48687031 -103850228 + Lx9 LINE L1 7554 7637 -7 2 956 772 313 42 56 chr5 48688142 48688426 -103848833 + B4 SINE B4 3 282 -10 2 956 225 226 0 0 chr5 48688454 48688507 -103848752 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 956 404 165 21 42 chr5 48688987 48689082 -103848177 - RMER1C Other Other -15 1327 1235 2 956 491 0 0 17 chr5 48689082 48689142 -103848117 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 956 184 289 25 62 chr5 48691596 48691677 -103845582 - MIR3 SINE MIR -47 161 84 2 956 652 224 60 12 chr5 48691679 48691846 -103845413 - MTEa LTR MaLR -2 377 203 2 956 1244 266 19 43 chr5 48691956 48692278 -103844981 + MTE2b LTR MaLR 58 371 -8 2 956 26 0 0 0 chr5 48696320 48696346 -103840913 + AT_rich Low_complexity Low_complexity 1 26 0 2 956 189 74 0 0 chr5 48696873 48696900 -103840359 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2 956 21 0 0 0 chr5 48697484 48697505 -103839754 + AT_rich Low_complexity Low_complexity 1 21 0 2 956 24 0 0 0 chr5 48698159 48698183 -103839076 + AT_rich Low_complexity Low_complexity 1 24 0 2 956 1816 211 47 17 chr5 48698888 48699293 -103837966 + MTD LTR MaLR 1 417 -2 2 956 230 284 0 29 chr5 48699386 48699455 -103837804 + ID SINE ID 4 70 -154 2 956 715 266 154 3 chr5 48699487 48699787 -103837472 - MTD LTR MaLR -59 360 14 2 956 183 80 0 0 chr5 48701681 48701706 -103835553 + (T)n Simple_repeat Simple_repeat 1 25 0 2 956 257 71 0 0 chr5 48701720 48701756 -103835503 - MIRc SINE MIR -146 116 81 2 956 235 265 89 57 chr5 48702777 48702901 -103834358 - LTR85a LTR Gypsy? -224 478 351 2 956 515 43 0 0 chr5 48703039 48703108 -103834151 + L1_Mus2 LINE L1 6498 6566 0 2 956 534 295 11 78 chr5 48703746 48703926 -103833333 - B3A SINE B2 -3 195 28 2 956 185 127 81 15 chr5 48703928 48704064 -103833195 + CT-rich Low_complexity Low_complexity 4 148 0 2 956 240 320 48 78 chr5 48704289 48704455 -103832804 - MLT1A0 LTR MaLR -14 351 191 2 956 862 331 26 38 chr5 48704448 48704793 -103832466 - MTEa LTR MaLR -17 362 22 2 956 649 200 96 0 chr5 48704828 48704963 -103832296 - B1_Mur3 SINE Alu -1 148 1 2 956 228 395 9 0 chr5 48705163 48705272 -103831987 - MLT1F LTR MaLR -253 295 186 2 956 570 307 85 57 chr5 48706597 48706880 -103830379 - MER58B DNA MER1_type -1 340 50 2 956 207 0 0 0 chr5 48706956 48706979 -103830280 + (A)n Simple_repeat Simple_repeat 1 23 0 2 956 317 267 28 56 chr5 48707323 48707363 -103829896 - ORR1E-int LTR MaLR -878 702 662 2 956 287 25 25 0 chr5 48707363 48707403 -103829856 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 2 956 317 267 28 56 chr5 48707403 48707469 -103829790 - ORR1E-int LTR MaLR -919 661 599 2 956 1740 188 108 20 chr5 48707470 48707915 -103829344 + Lx9 LINE L1 7014 7497 -147 2 956 649 124 8 8 chr5 48707916 48708046 -103829213 + (TAGA)n Simple_repeat Simple_repeat 2 131 0 2 956 232 255 0 0 chr5 48708051 48708098 -103829161 + (CATA)n Simple_repeat Simple_repeat 3 49 0 2 956 567 203 6 25 chr5 48708098 48708255 -103829004 + Lx9 LINE L1 7477 7630 -14 2 956 289 24 0 0 chr5 48708275 48708316 -103828943 - L1Md_F3 LINE L1 -15 6569 6529 2 956 1720 267 43 23 chr5 48708333 48708850 -103828409 - ORR1E-int LTR MaLR -1048 532 6 2 956 684 272 36 106 chr5 48708857 48709243 -103828016 - ORR1E LTR MaLR 0 359 1 2 956 277 323 8 75 chr5 48709342 48709476 -103827783 + MIR SINE MIR 138 262 0 2 956 248 333 50 17 chr5 48710006 48710125 -103827134 - LTR16C LTR ERVL -18 471 317 2 956 1415 266 58 18 chr5 48710135 48710533 -103826726 - MTD LTR MaLR -5 414 1 2 956 755 133 18 0 chr5 48711428 48711541 -103825718 + PB1D9 SINE Alu 1 115 -5 2 956 381 22 0 0 chr5 48714096 48714142 -103823117 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 956 403 325 91 30 chr5 48714173 48714405 -103822854 + MER31A LTR ERV1 150 395 -90 2 956 335 233 279 0 chr5 48715824 48715960 -103821299 + B3A SINE B2 1 182 -34 2 956 304 221 73 55 chr5 48716693 48716803 -103820456 + HAL1-2a_MD LINE L1 849 960 -2064 2 956 214 305 61 0 chr5 48716992 48717074 -103820185 - L4 LINE RTE -522 1507 1421 2 956 690 196 94 7 chr5 48717210 48717359 -103819900 - MTD LTR MaLR -8 411 250 2 956 573 258 151 34 chr5 48717569 48717774 -103819485 - MTD LTR MaLR -124 255 27 2 956 2001 79 0 0 chr5 48718086 48718339 -103818920 - Lx3B LINE L1 -1086 5887 5635 2 956 6542 129 40 17 chr5 48718339 48719420 -103817839 + Lx3B LINE L1 5866 6971 -2 2 956 231 36 0 0 chr5 48719426 48719454 -103817805 + (TAA)n Simple_repeat Simple_repeat 3 30 0 2 956 251 268 125 46 chr5 48719480 48719621 -103817638 + MTD LTR MaLR 258 404 -17 2 956 652 221 63 17 chr5 48719630 48719805 -103817454 + MTD-int LTR MaLR 8 190 -1068 2 956 2144 230 81 74 chr5 48719779 48720479 -103816780 + MTD-int LTR MaLR 554 1258 0 2 956 1622 215 55 11 chr5 48720556 48720923 -103816336 + MTD LTR MaLR 21 403 -16 2 956 657 301 70 52 chr5 48720935 48721380 -103815879 + L1MB3 LINE L1 5727 6179 -4 2 956 976 122 12 0 chr5 48721659 48721823 -103815436 + (TTTC)n Simple_repeat Simple_repeat 2 167 0 2 956 243 0 0 0 chr5 48722035 48722062 -103815197 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 2 956 277 361 46 9 chr5 48723545 48723654 -103813605 + PB1D10 SINE Alu 5 117 0 2 956 340 263 8 85 chr5 48723779 48723908 -103813351 + Charlie19a DNA Charlie 152 270 -116 2 956 208 330 42 8 chr5 48724059 48724178 -103813081 + MIRb SINE MIR 132 254 -14 2 956 369 219 0 0 chr5 48724546 48724665 -103812594 + (TG)n Simple_repeat Simple_repeat 1 119 0 2 956 225 290 0 29 chr5 48724680 48724783 -103812476 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 2 956 220 258 6 6 chr5 48724785 48724953 -103812306 + (TG)n Simple_repeat Simple_repeat 2 169 0 2 956 504 215 0 0 chr5 48724976 48725134 -103812125 + (TG)n Simple_repeat Simple_repeat 2 159 0 2 956 213 167 0 85 chr5 48725760 48725819 -103811440 - BC1_Mm scRNA scRNA -49 103 50 2 956 2350 131 57 13 chr5 48726267 48726653 -103810606 + MTC LTR MaLR 11 413 -8 2 956 348 24 0 0 chr5 48727028 48727069 -103810190 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 956 389 345 53 34 chr5 48727482 48727746 -103809513 + MLT1C LTR MaLR 192 460 -7 2 956 616 217 35 14 chr5 48727843 48727988 -103809271 + B1F1 SINE Alu 1 148 -1 2 956 916 52 0 0 chr5 48728166 48728281 -103808978 - B1_Mm SINE Alu 0 147 33 3 956 531 371 37 66 chr5 48728405 48728783 -103808476 - MLT1A LTR MaLR -7 367 1 3 956 258 32 0 0 chr5 48729057 48729088 -103808171 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 956 1403 223 177 24 chr5 48729968 48730172 -103807087 - Lx7 LINE L1 0 7696 7448 3 956 360 88 0 0 chr5 48730172 48730229 -103807030 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 956 1403 223 177 24 chr5 48730229 48730515 -103806744 - Lx7 LINE L1 -249 7447 7131 3 956 390 91 0 0 chr5 48730806 48730861 -103806398 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 956 330 26 0 0 chr5 48731468 48731507 -103805752 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 956 209 57 0 28 chr5 48732032 48732068 -103805191 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 956 437 307 27 38 chr5 48732782 48732968 -103804291 + MER53 DNA hAT 3 186 -7 3 956 275 389 25 61 chr5 48734016 48734213 -103803046 - MER20 DNA MER1_type -1 218 29 3 956 1315 138 4 22 chr5 48734563 48734793 -103802466 - Lx LINE L1 -2 6652 6427 3 956 867 128 0 0 chr5 48734793 48734926 -103802333 - Lx2 LINE L1 -354 6643 6511 3 956 190 368 111 19 chr5 48735316 48735424 -103801835 - MIRm SINE MIR -8 268 151 3 956 787 184 0 0 chr5 48737640 48737765 -103799494 + B3 SINE B2 6 130 -86 3 956 410 292 9 34 chr5 48737913 48738039 -103799220 + PB1 SINE Alu 6 122 -5 3 956 528 181 12 6 chr5 48738073 48738240 -103799019 + GA-rich Low_complexity Low_complexity 1 168 0 3 956 507 291 53 68 chr5 48738240 48738529 -103798730 - MLT2B4 LTR ERVL -132 282 1 3 956 1540 211 10 121 chr5 48738843 48738999 -103798260 - MTC LTR MaLR -55 366 210 3 956 207 0 0 0 chr5 48738999 48739022 -103798237 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 3 956 1059 78 7 21 chr5 48739023 48739167 -103798092 - B1_Mus1 SINE Alu -6 142 1 3 956 1540 211 10 121 chr5 48739167 48739320 -103797939 - MTC LTR MaLR -212 209 97 3 956 1584 181 60 3 chr5 48739320 48739620 -103797639 - Lx LINE L1 -2 6652 6336 3 956 1540 211 10 121 chr5 48739620 48739695 -103797564 - MTC LTR MaLR -325 96 22 3 956 669 25 0 0 chr5 48739695 48739774 -103797485 + (GAA)n Simple_repeat Simple_repeat 1 79 0 3 956 327 297 10 29 chr5 48739804 48739908 -103797351 - ERVL-B4-int LTR ERVL -2733 2981 2880 3 956 837 306 10 0 chr5 48740247 48740453 -103796806 - MER82 DNA MER2_type -1 652 445 3 956 2547 128 47 16 chr5 48740564 48741008 -103796251 - RMER6B LTR ERVK -3 458 1 3 956 221 154 0 0 chr5 48741404 48741443 -103795816 + GA-rich Low_complexity Low_complexity 1 39 0 3 956 521 306 97 20 chr5 48741445 48741692 -103795567 - MLT2C1 LTR ERVL -21 376 111 3 956 1620 86 13 4 chr5 48741738 48741972 -103795287 - L1_Mus3 LINE L1 -4 6634 6399 3 956 344 244 13 0 chr5 48742016 48742094 -103795165 - MLT2C1 LTR ERVL -292 105 27 3 956 310 321 112 6 chr5 48742221 48742381 -103794878 - Cheshire DNA MER1_type -2243 177 1 3 956 483 308 108 75 chr5 48742545 48742906 -103794353 + MLT1H2 LTR MaLR 81 453 -36 3 956 34751 66 3 2 chr5 48743443 48749648 -103787611 - L1Md_F3 LINE L1 -2 6582 411 3 956 207 262 33 0 chr5 48749776 48749837 -103787422 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 3 956 234 0 0 0 chr5 48749875 48749901 -103787358 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 956 812 296 100 16 chr5 48750523 48750774 -103786485 - MTEa LTR MaLR -107 272 1 3 956 441 0 0 0 chr5 48751379 48751428 -103785831 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 956 323 328 148 25 chr5 48751434 48751556 -103785703 - RSINE1 SINE B4 -19 146 10 3 956 2433 211 82 13 chr5 48752847 48753374 -103783885 - RLTR20B1 LTR ERVK 0 563 1 3 956 261 363 26 69 chr5 48753375 48753606 -103783653 - B4A SINE B4 -55 237 17 3 956 3237 35 0 0 chr5 48753611 48754008 -103783251 - L1_Mus1 LINE L1 -26 6541 6145 3 956 456 222 173 8 chr5 48754037 48754164 -103783095 - MTE2a LTR MaLR -1 378 231 3 956 660 258 203 22 chr5 48754187 48754345 -103782914 - Lx8 LINE L1 -447 7026 6811 3 956 387 0 0 0 chr5 48754345 48754388 -103782871 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 956 660 258 203 22 chr5 48754388 48754593 -103782666 - Lx8 LINE L1 -663 6810 6598 3 956 213 39 0 0 chr5 48754722 48754748 -103782511 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 3 956 495 0 0 0 chr5 48754753 48754808 -103782451 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 956 660 306 89 38 chr5 48755245 48755636 -103781623 - Lx8 LINE L1 -872 6601 6191 3 956 594 71 0 0 chr5 48756112 48756196 -103781063 + (TA)n Simple_repeat Simple_repeat 1 84 0 3 956 3835 89 30 2 chr5 48756307 48756850 -103780409 - L1_Mus3 LINE L1 -3 6635 6078 3 119 7601 64 9 3 chr5 48757121 48758863 -103778396 - L1Md_F2 LINE L1 0 6582 4868 3 957 9457 88 8 12 chr5 48758867 48760827 -103776432 - L1Md_F2 LINE L1 -3278 2605 658 3 957 441 0 0 0 chr5 48760868 48760917 -103776342 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 957 294 29 0 0 chr5 48760917 48760951 -103776308 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 957 3323 186 37 33 chr5 48761000 48761674 -103775585 + ORR1C2-int LTR MaLR 833 1509 0 3 957 1713 187 54 43 chr5 48761881 48762250 -103775009 + ORR1C2 LTR MaLR 10 382 -2 3 957 272 352 16 0 chr5 48762610 48762735 -103774524 + L2 LINE L2 2317 2443 -976 3 957 26 50 0 0 chr5 48763156 48763196 -103774063 + AT_rich Low_complexity Low_complexity 1 40 0 3 957 457 277 128 23 chr5 48764689 48764822 -103772437 + B1_Mur2 SINE Alu 2 148 -1 3 957 407 298 107 0 chr5 48764836 48764957 -103772302 + B4A SINE B4 139 272 -20 3 957 255 229 57 0 chr5 48765040 48765110 -103772149 + Charlie7 DNA MER1_type 1940 2013 -599 3 957 651 280 62 5 chr5 48765144 48765352 -103771907 + B4A SINE B4 61 280 -12 3 957 472 271 114 26 chr5 48767325 48767518 -103769741 + ID_B1 SINE B4 2 211 -13 3 957 260 102 20 0 chr5 48767519 48767568 -103769691 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 957 180 77 0 0 chr5 48767595 48767621 -103769638 + (GA)n Simple_repeat Simple_repeat 1 26 0 3 957 21 0 0 0 chr5 48768437 48768458 -103768801 + AT_rich Low_complexity Low_complexity 1 21 0 3 957 237 65 0 0 chr5 48768565 48768596 -103768663 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 3 957 1316 244 17 6 chr5 48768741 48769087 -103768172 - Lx6 LINE L1 -26 7434 7085 3 957 396 342 13 0 chr5 48769288 48769446 -103767813 - RSINE1 SINE B4 -2 163 4 3 957 193 29 29 29 chr5 48770258 48770293 -103766966 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 957 210 250 0 0 chr5 48770296 48770368 -103766891 + T-rich Low_complexity Low_complexity 1 72 0 3 957 240 304 67 29 chr5 48771559 48771664 -103765595 - MTE2b LTR MaLR -6 373 265 3 957 805 316 57 9 chr5 48772538 48772765 -103764494 - B4 SINE B4 0 292 55 3 957 4455 155 82 11 chr5 48773342 48774143 -103763116 - Lx4B LINE L1 -2 7056 6199 3 957 3814 95 67 9 chr5 48774144 48774805 -103762454 - L1_Mur2 LINE L1 -2999 2878 2180 3 957 1937 115 9 21 chr5 48774822 48775159 -103762100 - L1_Mur2 LINE L1 -4019 1858 1526 3 957 1089 77 35 0 chr5 48775181 48775324 -103761935 - B1_Mus1 SINE Alu 0 148 1 3 957 303 106 0 0 chr5 48775326 48775373 -103761886 - L1_Mur2 LINE L1 -4332 1545 1499 3 957 354 148 16 0 chr5 48775375 48775436 -103761823 - L1VL4 LINE L1 -5835 467 406 3 957 2481 209 52 7 chr5 48775437 48776009 -103761250 - L1_Mur2 LINE L1 -5963 1123 526 3 957 555 56 0 0 chr5 48776683 48776754 -103760505 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 3 957 1098 76 0 0 chr5 48776755 48776899 -103760360 - B1_Mus1 SINE Alu -3 145 2 3 957 327 250 45 0 chr5 48776792 48776924 -103760335 - ORR1B1-int LTR MaLR -755 754 617 3 957 831 42 244 0 chr5 48777106 48777225 -103760034 - B1_Mus1 SINE Alu 0 148 1 3 957 713 209 146 6 chr5 48777866 48778044 -103759215 + B3 SINE B2 3 205 -11 3 957 533 238 163 26 chr5 48778229 48778419 -103758840 + B3 SINE B2 1 216 0 3 957 422 192 50 65 chr5 48778995 48779134 -103758125 + RMER1C Other Other 1054 1190 -152 3 957 282 148 0 0 chr5 48779139 48779193 -103758066 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 3 957 207 189 0 0 chr5 48780007 48780044 -103757215 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 957 182 244 67 0 chr5 48780121 48780166 -103757093 - MER5A DNA MER1_type -42 147 100 3 957 264 212 86 12 chr5 48782455 48782536 -103754723 + MT2A LTR ERVL 2 88 -445 3 957 1580 74 20 0 chr5 48782754 48782998 -103754261 - L1_Mm LINE L1 -632 3282 3034 3 957 6703 100 16 53 chr5 48782997 48784557 -103752702 - L1_Mm LINE L1 -3214 2669 1283 3 957 5032 97 31 6 chr5 48784527 48785304 -103751955 - L1VL2 LINE L1 -5363 972 177 3 957 1358 216 152 3 chr5 48785309 48785638 -103751621 + MT2A LTR ERVL 78 455 -78 3 957 243 215 0 0 chr5 48785662 48785727 -103751532 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 957 463 276 10 0 chr5 48786453 48786551 -103750708 + RSINE1 SINE B4 48 146 -19 3 957 206 81 0 26 chr5 48786605 48786643 -103750616 + (CAA)n Simple_repeat Simple_repeat 2 38 0 3 957 225 108 0 0 chr5 48786772 48786809 -103750450 + (TATG)n Simple_repeat Simple_repeat 4 40 0 3 957 598 247 75 7 chr5 48786821 48786968 -103750291 - B3A SINE B2 -41 157 1 3 957 186 283 16 62 chr5 48787560 48787624 -103749635 + MIR3 SINE MIR 116 176 -32 3 957 26 30 0 0 chr5 48790102 48790135 -103747124 + AT_rich Low_complexity Low_complexity 1 33 0 3 957 277 238 155 19 chr5 48790235 48790338 -103746921 + MIR SINE MIR 110 226 -36 3 957 617 88 10 0 chr5 48791803 48791905 -103745354 + (TC)n Simple_repeat Simple_repeat 2 104 0 3 957 394 162 54 0 chr5 48791906 48792017 -103745242 + (TCTA)n Simple_repeat Simple_repeat 2 118 0 3 957 670 89 24 8 chr5 48792477 48792602 -103744657 - L1_Mus4 LINE L1 -4 6632 6506 3 957 22 35 0 0 chr5 48792925 48792954 -103744305 + AT_rich Low_complexity Low_complexity 1 29 0 3 957 931 176 84 16 chr5 48793128 48793318 -103743941 - B3 SINE B2 -13 203 1 3 957 280 327 20 0 chr5 48794416 48794566 -103742693 + L1MC3 LINE L1 6870 7022 -763 3 957 2387 38 0 3 chr5 48794679 48794973 -103742286 - L1Md_F3 LINE L1 0 6584 6292 3 957 1150 290 32 42 chr5 48795015 48795490 -103741769 + L1MC3 LINE L1 7225 7694 -91 3 957 279 337 40 0 chr5 48795951 48796052 -103741207 + L2a LINE L2 3322 3426 0 3 957 447 19 0 0 chr5 48796150 48796202 -103741057 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 957 219 69 0 0 chr5 48796981 48797010 -103740249 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 4 957 388 141 49 76 chr5 48797031 48797215 -103740044 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 4 957 308 325 121 34 chr5 48797763 48797970 -103739289 + MIR SINE MIR 32 256 -6 4 957 216 400 25 0 chr5 48798326 48798455 -103738804 - MIR SINE MIR -128 140 3 4 957 240 143 0 0 chr5 48800417 48800459 -103736800 + (TCTG)n Simple_repeat Simple_repeat 3 44 0 4 957 185 261 13 80 chr5 48801497 48801572 -103735687 - MIR SINE MIR -123 139 70 4 957 507 33 0 0 chr5 48802573 48802634 -103734625 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 957 374 108 15 0 chr5 48802634 48802698 -103734561 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 957 747 282 69 11 chr5 48802720 48802996 -103734263 - B4A SINE B4 0 292 1 4 957 405 381 50 18 chr5 48803647 48803869 -103733390 + MIR SINE MIR 34 262 0 4 957 21 0 0 0 chr5 48803910 48803931 -103733328 + AT_rich Low_complexity Low_complexity 1 21 0 4 957 1282 57 62 6 chr5 48803931 48804108 -103733151 - B2_Mm2 SINE B2 -7 188 2 4 957 255 260 25 38 chr5 48804319 48804399 -103732860 + ID4_ SINE ID 3 81 -2 4 957 266 264 14 27 chr5 48805698 48805772 -103731487 - ID4 SINE ID -10 73 1 4 957 210 229 49 0 chr5 48805993 48806054 -103731205 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 4 957 403 278 74 55 chr5 48806572 48806789 -103730470 - L2a LINE L2 -62 3364 3144 4 957 303 292 0 10 chr5 48807103 48807200 -103730059 + GA-rich Low_complexity Low_complexity 1 96 0 4 957 263 333 39 39 chr5 48807253 48807381 -103729878 - L2a LINE L2 -568 2851 2724 4 957 197 346 238 14 chr5 48808189 48808403 -103728856 + L2 LINE L2 2327 2588 -831 4 957 1113 123 0 0 chr5 48809627 48809806 -103727453 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 4 957 334 64 0 0 chr5 48809814 48809861 -103727398 - L1_Mus2 LINE L1 -13 6553 6507 4 957 335 355 35 18 chr5 48809935 48809959 -103727300 + MIR SINE MIR 21 45 -217 4 957 333 0 0 0 chr5 48809959 48809996 -103727263 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 957 378 307 28 14 chr5 48809996 48810140 -103727119 + MIR3 SINE MIR 46 202 -66 4 957 360 0 0 0 chr5 48810635 48810675 -103726584 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 957 1133 219 136 16 chr5 48810756 48811113 -103726146 - MTD LTR MaLR -21 398 3 4 957 180 0 0 0 chr5 48812072 48812092 -103725167 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 957 1056 112 0 0 chr5 48812092 48812235 -103725024 - B1_Mm SINE Alu -3 144 2 4 957 641 218 6 0 chr5 48812435 48812605 -103724654 + (TA)n Simple_repeat Simple_repeat 1 171 0 4 957 222 91 0 0 chr5 48813144 48813177 -103724082 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 4 957 225 247 20 10 chr5 48813535 48813633 -103723626 + CT-rich Low_complexity Low_complexity 1 99 0 4 957 2254 328 64 16 chr5 48814401 48815528 -103721731 - Lx8 LINE L1 -134 7339 6159 4 957 23 33 0 0 chr5 48815915 48815945 -103721314 + AT_rich Low_complexity Low_complexity 1 30 0 4 957 463 303 136 34 chr5 48815945 48816092 -103721167 + RSINE1 SINE B4 3 164 -1 4 957 255 231 25 13 chr5 48816303 48816382 -103720877 + Lx8 LINE L1 7383 7462 -11 4 957 4454 134 11 30 chr5 48817365 48818110 -103719149 + Lx4A LINE L1 6299 7029 -29 4 957 3029 14 0 0 chr5 48818107 48818468 -103718791 + L1Md_T LINE L1 5226 5586 -297 4 957 8324 39 1 0 chr5 48818468 48819463 -103717796 + L1Md_T LINE L1 5587 6582 0 4 957 1079 69 14 0 chr5 48819479 48819624 -103717635 + B1_Mus2 SINE Alu 1 147 0 4 957 4775 52 0 5 chr5 48819743 48820342 -103716917 + L1Md_F2 LINE L1 5985 6580 -2 4 957 24 0 0 0 chr5 48820351 48820375 -103716884 + AT_rich Low_complexity Low_complexity 1 24 0 4 957 309 314 63 54 chr5 48820876 48821081 -103716178 - MIRb SINE MIR -3 265 59 4 957 222 163 0 23 chr5 48822197 48822241 -103715018 + (TAA)n Simple_repeat Simple_repeat 1 43 0 4 957 413 281 8 58 chr5 48822552 48822673 -103714586 - MTE2b LTR MaLR -262 117 3 4 957 919 272 80 0 chr5 48824781 48825057 -103712202 + Lx7 LINE L1 6739 7036 -660 4 957 757 51 26 0 chr5 48825195 48825312 -103711947 + L1Md_F3 LINE L1 6465 6584 0 4 957 231 327 0 46 chr5 48826106 48826215 -103711044 + CT-rich Low_complexity Low_complexity 5 108 0 4 957 431 114 297 34 chr5 48827944 48828062 -103709197 - B2_Mm2 SINE B2 0 195 47 4 957 1202 124 11 0 chr5 48828079 48828256 -103709003 - B2_Mm1t SINE B2 -14 179 1 4 957 2544 50 71 0 chr5 48829327 48829650 -103707609 + ORR1A1 LTR MaLR 1 346 0 4 957 271 365 42 34 chr5 48830193 48830312 -103706947 + B1F1 SINE Alu 11 130 -19 4 957 229 289 0 12 chr5 48830550 48830634 -103706625 + MLT1H LTR MaLR 461 543 -6 4 957 372 341 112 58 chr5 48830642 48830990 -103706269 + MLT1H-int LTR MaLR 2 368 -1041 4 957 2382 119 10 25 chr5 48831203 48831609 -103705650 + Lx2A1 LINE L1 6609 7008 0 4 957 3307 201 35 49 chr5 48831636 48832823 -103704436 + Lx6 LINE L1 5450 6653 -807 4 957 195 69 0 0 chr5 48832875 48832904 -103704355 + (T)n Simple_repeat Simple_repeat 1 29 0 4 957 26 74 0 0 chr5 48832970 48833024 -103704235 + AT_rich Low_complexity Low_complexity 1 54 0 4 957 181 209 116 0 chr5 48833465 48833508 -103703751 + MIR SINE MIR 171 218 -44 4 957 555 251 185 14 chr5 48835251 48835473 -103701786 - Lx5 LINE L1 -11 7039 6780 4 957 362 123 0 50 chr5 48835473 48835533 -103701726 + 5S rRNA rRNA 61 117 -4 4 957 273 133 0 0 chr5 48835536 48835581 -103701678 + RLTR15 LTR ERVK 198 242 -117 4 957 2014 206 55 36 chr5 48836766 48837240 -103700019 + RMER19C LTR ERVK 115 611 0 4 957 435 265 98 0 chr5 48837243 48837375 -103699884 + MER58C DNA MER1_type 71 215 0 4 957 180 0 0 0 chr5 48837826 48837846 -103699413 + (CATTT)n Simple_repeat Simple_repeat 3 22 0 4 957 21 0 0 0 chr5 48838058 48838079 -103699180 + AT_rich Low_complexity Low_complexity 1 21 0 4 957 810 135 211 11 chr5 48838393 48838573 -103698686 - B3 SINE B2 0 216 1 4 957 402 200 69 46 chr5 48838707 48838880 -103698379 - Lx9 LINE L1 0 7644 7468 4 957 213 108 0 0 chr5 48838947 48838984 -103698275 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 957 615 293 151 60 chr5 48839190 48839521 -103697738 - MTEa LTR MaLR -6 373 13 4 957 323 249 0 50 chr5 48839622 48839804 -103697455 + C-rich Low_complexity Low_complexity 5 177 0 4 957 222 37 0 0 chr5 48841670 48841697 -103695562 + (T)n Simple_repeat Simple_repeat 1 27 0 4 957 235 345 58 93 chr5 48841927 48842218 -103695041 + MLT1L LTR MaLR 9 289 -321 4 957 560 216 103 15 chr5 48843065 48843201 -103694058 + Lx9 LINE L1 7072 7219 -425 4 957 281 220 24 48 chr5 48843278 48843402 -103693857 + Lx9 LINE L1 7502 7622 -22 4 957 23 78 0 0 chr5 48843412 48843463 -103693796 + AT_rich Low_complexity Low_complexity 1 51 0 4 957 399 317 104 68 chr5 48843655 48843933 -103693326 - MTEa LTR MaLR -74 305 18 4 957 624 309 43 6 chr5 48844280 48844443 -103692816 - B4A SINE B4 -76 216 48 4 957 652 164 27 131 chr5 48846164 48846423 -103690836 + Lx9 LINE L1 7413 7644 0 4 957 437 256 88 0 chr5 48846623 48846748 -103690511 - Lx8 LINE L1 -148 7325 7190 4 957 322 213 0 21 chr5 48848254 48848350 -103688909 + GA-rich Low_complexity Low_complexity 3 96 0 4 957 684 246 14 14 chr5 48848471 48848619 -103688640 + B1_Mur2 SINE Alu 2 149 0 4 957 2845 202 79 31 chr5 48848704 48849477 -103687782 + RMER1A Other Other 271 1029 -1 4 957 286 129 16 16 chr5 48849545 48849608 -103687651 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 957 1034 281 57 3 chr5 48849822 48850157 -103687102 - MLT1B LTR MaLR -37 353 1 4 957 618 14 0 0 chr5 48850549 48850620 -103686639 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 4 957 261 0 0 0 chr5 48850826 48850855 -103686404 + (T)n Simple_repeat Simple_repeat 1 29 0 4 957 1409 216 47 86 chr5 48851049 48851247 -103686012 + ORR1D1 LTR MaLR 1 181 -193 4 957 405 0 0 0 chr5 48851247 48851292 -103685967 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 957 1409 216 47 86 chr5 48851292 48851478 -103685781 + ORR1D1 LTR MaLR 182 370 -4 4 957 182 345 0 0 chr5 48851663 48851721 -103685538 + L2 LINE L2 2710 2767 -652 4 957 501 342 73 18 chr5 48851759 48852033 -103685226 + L2 LINE L2 2264 2552 -867 4 957 234 62 0 0 chr5 48852518 48852550 -103684709 + (CCA)n Simple_repeat Simple_repeat 1 32 0 4 957 1033 55 0 0 chr5 48853035 48853163 -103684096 + B1_Mus1 SINE Alu 15 142 -6 4 957 189 0 0 0 chr5 48853165 48853186 -103684073 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 957 22 0 0 0 chr5 48853541 48853563 -103683696 + AT_rich Low_complexity Low_complexity 1 22 0 4 957 11549 87 17 2 chr5 48854220 48856699 -103680560 + L1_Mus2 LINE L1 4043 6566 0 4 957 367 217 49 28 chr5 48857107 48857249 -103680010 - Lx9 LINE L1 -34 7610 7466 4 957 363 269 18 55 chr5 48857252 48857362 -103679897 - MLT2C2 LTR ERVL -341 123 18 4 957 251 196 0 0 chr5 48859361 48859412 -103677847 + CT-rich Low_complexity Low_complexity 2 52 0 4 957 1043 101 0 16 chr5 48859418 48859600 -103677659 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 957 307 333 22 126 chr5 48859604 48859786 -103677473 - RSINE1 SINE B4 0 165 3 4 957 824 326 62 26 chr5 48860245 48860747 -103676512 + MER68 LTR ERVL 3 563 0 4 957 420 161 16 8 chr5 48861258 48861383 -103675876 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 4 957 264 30 0 0 chr5 48861429 48861462 -103675797 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 957 786 217 62 33 chr5 48861855 48862098 -103675161 + Lx7 LINE L1 7447 7696 0 4 957 1914 153 18 24 chr5 48862156 48862485 -103674774 - ORR1A4 LTR MaLR 0 329 3 5 957 981 0 0 0 chr5 48863220 48863329 -103673930 + (GAA)n Simple_repeat Simple_repeat 3 111 0 5 957 336 48 0 0 chr5 48863747 48863789 -103673470 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 957 241 356 14 0 chr5 48863832 48863905 -103673354 + ID4 SINE ID 3 76 -7 5 957 408 71 0 0 chr5 48863915 48863971 -103673288 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 957 2236 121 12 0 chr5 48864498 48864821 -103672438 - ORR1A2 LTR MaLR 0 327 1 5 957 468 86 0 0 chr5 48864923 48864993 -103672266 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 957 526 359 66 25 chr5 48866064 48866427 -103670832 + MLT1E1A LTR MaLR 293 670 -10 5 957 30 27 0 0 chr5 48866490 48866527 -103670732 + AT_rich Low_complexity Low_complexity 1 37 0 5 957 968 176 56 32 chr5 48866692 48866976 -103670283 + Lx5 LINE L1 5772 6075 -983 5 957 1720 257 144 9 chr5 48866986 48867729 -103669530 + Lx6 LINE L1 6528 7419 -41 5 957 396 0 0 0 chr5 48868070 48868114 -103669145 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 957 422 337 18 24 chr5 48868248 48868415 -103668844 + MER5B DNA MER1_type 6 171 -7 5 957 287 250 97 65 chr5 48868763 48868917 -103668342 + MER5A1 DNA MER1_type 8 166 0 5 957 238 232 10 59 chr5 48869627 48869728 -103667531 + GA-rich Low_complexity Low_complexity 4 99 0 5 957 1266 90 10 41 chr5 48871134 48871331 -103665928 - B2_Mm1t SINE B2 -2 191 1 5 957 216 0 0 0 chr5 48871343 48871367 -103665892 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 957 1061 88 0 0 chr5 48871367 48871504 -103665755 - B1_Mus1 SINE Alu -10 138 2 5 957 233 213 0 0 chr5 48871684 48871731 -103665528 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 957 510 313 65 39 chr5 48872785 48873064 -103664195 + B4 SINE B4 3 288 -4 5 957 256 245 0 0 chr5 48873334 48873383 -103663876 + MIR SINE MIR 29 77 -185 5 957 198 71 0 0 chr5 48874313 48874341 -103662918 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 957 389 234 30 57 chr5 48874499 48874618 -103662641 + B2_Mm2 SINE B2 1 117 -81 5 957 225 0 0 0 chr5 48875517 48875542 -103661717 + (A)n Simple_repeat Simple_repeat 1 25 0 5 957 226 167 0 0 chr5 48875544 48875580 -103661679 - 5S rRNA rRNA -76 45 10 5 957 2943 157 6 22 chr5 48875580 48876089 -103661170 + Lx2B LINE L1 6495 6995 -5 5 957 760 278 40 25 chr5 48876154 48876479 -103660780 - L1_Mur3 LINE L1 -1514 4366 4037 5 957 376 313 75 48 chr5 48876511 48876950 -103660309 + Lx7 LINE L1 5029 5479 -401 5 957 611 278 72 12 chr5 48876962 48877151 -103660108 - B3 SINE B2 0 193 2 5 957 933 221 19 34 chr5 48877276 48877482 -103659777 + B3 SINE B2 7 209 -7 5 957 940 233 38 19 chr5 48877527 48877846 -103659413 + Lx7 LINE L1 5587 5911 -1785 5 957 1809 309 78 13 chr5 48878237 48879024 -103658235 + Lx8 LINE L1 6117 6954 -519 5 957 792 171 0 0 chr5 48879024 48879153 -103658106 + B3 SINE B2 2 130 -86 5 957 1159 299 50 21 chr5 48879253 48879732 -103657527 + Lx8 LINE L1 6979 7471 -2 5 957 948 142 181 16 chr5 48880214 48880407 -103656852 + URR1A DNA MER1_type 2 226 0 5 957 201 222 70 100 chr5 48881367 48881467 -103655792 - MIRb SINE MIR -81 187 91 5 957 191 289 48 145 chr5 48882459 48882625 -103654634 - MIRb SINE MIR -73 195 46 5 957 255 131 16 32 chr5 48882672 48882735 -103654524 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 5 957 184 375 44 7 chr5 48882752 48882889 -103654370 - MIR SINE MIR -41 221 80 5 957 548 236 127 14 chr5 48883710 48883852 -103653407 - B3 SINE B2 -58 158 1 5 957 26 50 0 0 chr5 48884001 48884041 -103653218 + AT_rich Low_complexity Low_complexity 1 40 0 5 957 286 415 14 0 chr5 48884072 48884219 -103653040 - RSINE1 SINE B4 -15 150 2 5 957 303 333 47 35 chr5 48884281 48884452 -103652807 + L1MEg LINE L1 886 1058 -5026 5 957 299 174 17 17 chr5 48884455 48884572 -103652687 + GA-rich Low_complexity Low_complexity 2 118 0 5 957 345 268 133 9 chr5 48884715 48884828 -103652431 + B1F1 SINE Alu 15 141 -8 5 957 336 175 0 0 chr5 48884912 48884975 -103652284 + T-rich Low_complexity Low_complexity 1 63 0 5 957 2635 68 68 40 chr5 48886649 48887046 -103650213 + L1Md_F2 LINE L1 6164 6571 -11 5 957 226 284 108 0 chr5 48887063 48887137 -103650122 + Lx8 LINE L1 6922 7003 -470 5 957 414 332 40 25 chr5 48887146 48887347 -103649912 + Lx8 LINE L1 7177 7380 -93 5 957 1164 48 0 26 chr5 48887459 48887470 -103649789 - B1_Mus1 SINE Alu 0 148 140 5 957 222 37 0 0 chr5 48887470 48887497 -103649762 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 957 1164 48 0 26 chr5 48887497 48887636 -103649623 - B1_Mus1 SINE Alu -9 139 2 5 957 429 295 48 68 chr5 48887940 48888147 -103649112 - RMER2 LTR ERV1 -27 540 338 5 957 3118 59 0 56 chr5 48888815 48889263 -103647996 - L1Md_F2 LINE L1 0 6582 6160 5 957 418 105 0 0 chr5 48889263 48889320 -103647939 + L1Md_F2 LINE L1 6069 6125 -459 5 957 24 0 0 0 chr5 48889553 48889577 -103647682 + AT_rich Low_complexity Low_complexity 1 24 0 5 958 195 156 62 0 chr5 48892250 48892314 -103644945 + CT-rich Low_complexity Low_complexity 3 70 0 5 958 3129 70 17 0 chr5 48895566 48895980 -103641279 + BGLII LTR ERVK 1 421 0 5 958 638 318 102 76 chr5 48897736 48898287 -103638972 - L1MA4A LINE L1 -344 5959 5395 5 958 292 371 18 30 chr5 48899384 48899548 -103637711 + MLT2B1 LTR ERVL 8 169 -351 5 958 218 176 0 19 chr5 48899715 48899767 -103637492 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 5 958 1500 258 101 24 chr5 48899872 48900043 -103637216 + L1MA6 LINE L1 5597 5786 -514 5 958 432 0 0 0 chr5 48900043 48900091 -103637168 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 5 958 1500 258 100 23 chr5 48900091 48900546 -103636713 + L1MA6 LINE L1 5787 6273 -27 5 958 278 274 43 41 chr5 48903412 48903538 -103633721 + MTE2a LTR MaLR 241 364 -15 5 958 337 179 0 124 chr5 48903569 48903658 -103633601 - RMER1C Other Other -326 1016 939 5 958 240 132 0 0 chr5 48903657 48903695 -103633564 + RMER1C Other Other 1012 1049 -293 5 958 1187 115 6 11 chr5 48903698 48903874 -103633385 + B2_Mm1t SINE B2 4 178 -15 5 958 300 205 13 34 chr5 48903924 48903991 -103633268 + B2_Mm2 SINE B2 46 116 -82 5 958 1156 177 38 110 chr5 48904019 48904336 -103632923 + RMER1C Other Other 1040 1333 -9 5 958 542 105 9 0 chr5 48904336 48904441 -103632818 + (GA)n Simple_repeat Simple_repeat 2 107 0 5 958 285 342 26 14 chr5 48904635 48904796 -103632463 + MIR SINE MIR 87 258 -10 5 958 303 179 0 0 chr5 48905581 48905648 -103631611 + (CA)n Simple_repeat Simple_repeat 1 67 0 5 958 477 50 0 0 chr5 48906003 48906063 -103631196 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 958 865 255 87 83 chr5 48906234 48906738 -103630521 + Lx9 LINE L1 7134 7639 -5 5 958 6617 146 10 7 chr5 48906970 48908439 -103628820 + Lx LINE L1 5176 6653 -1 5 958 337 320 126 39 chr5 48908675 48908769 -103628490 + L1MEf LINE L1 1422 1534 -4666 5 958 432 0 0 0 chr5 48908769 48908817 -103628442 + (CATA)n Simple_repeat Simple_repeat 1 48 0 5 958 337 320 126 39 chr5 48908817 48908904 -103628355 + L1MEf LINE L1 1535 1619 -4581 5 958 284 361 22 22 chr5 48908941 48909216 -103628043 + L1MEf LINE L1 1738 2012 -4188 5 958 29 0 0 0 chr5 48910238 48910267 -103626992 + AT_rich Low_complexity Low_complexity 1 29 0 5 958 238 275 25 0 chr5 48911475 48911555 -103625704 + CT-rich Low_complexity Low_complexity 3 84 0 5 958 264 279 0 0 chr5 48912068 48912129 -103625130 + CT-rich Low_complexity Low_complexity 3 63 0 5 958 265 351 0 0 chr5 48912149 48912226 -103625033 - ID2 SINE ID -4 79 3 5 958 214 321 49 12 chr5 48913664 48913746 -103623513 + MER5B DNA MER1_type 13 97 -81 5 958 277 335 120 21 chr5 48913904 48914096 -103623163 + MER102c DNA MER1_type 88 298 -33 5 958 407 329 76 19 chr5 48914140 48914298 -103622961 + MLT1C LTR MaLR 1 167 -300 5 958 4297 112 5 0 chr5 48914754 48915391 -103621868 + L1Md_F2 LINE L1 4004 4643 -1240 5 958 32317 36 0 0 chr5 48915408 48919342 -103617917 + L1Md_T LINE L1 1653 5586 -297 5 958 8424 33 0 0 chr5 48919342 48920338 -103616921 + L1Md_T LINE L1 5587 6582 0 5 958 7023 81 1 0 chr5 48920341 48921288 -103615971 + L1Md_F2 LINE L1 4631 5578 -305 5 958 6267 84 90 11 chr5 48921289 48922210 -103615049 + L1Md_F2 LINE L1 5589 6582 0 5 958 4681 77 8 33 chr5 48922213 48923052 -103614207 + L1_Mus2 LINE L1 5917 6566 0 5 958 403 300 92 13 chr5 48924002 48924154 -103613105 + MER5A1 DNA MER1_type 1 164 -2 5 958 408 291 0 96 chr5 48924357 48924513 -103612746 + ID_B1 SINE B4 84 224 0 5 958 320 262 36 0 chr5 48924824 48924908 -103612351 - B1_Mus1 SINE Alu -60 88 2 5 958 261 333 40 160 chr5 48924908 48924937 -103612322 + ID_B1 SINE B4 73 192 -29 5 958 422 306 55 9 chr5 48924937 48925046 -103612213 + PB1D7 SINE Alu 7 120 0 5 958 282 87 0 0 chr5 48925355 48925401 -103611858 + (A)n Simple_repeat Simple_repeat 1 46 0 5 958 380 301 59 21 chr5 48926835 48927022 -103610237 - MER2 DNA MER2_type -55 290 97 5 958 1069 44 66 0 chr5 48927377 48927514 -103609745 - B1_Mus2 SINE Alu 0 147 2 5 958 4986 204 38 31 chr5 48927576 48928781 -103608478 + Lx2B LINE L1 5713 6995 -5 5 958 582 348 0 42 chr5 48929167 48929356 -103607903 - B4A SINE B4 -8 284 104 5 958 765 321 139 3 chr5 48929944 48930281 -103606978 - MLT1B LTR MaLR -4 386 4 5 958 246 305 137 0 chr5 48931317 48931412 -103605847 + RSINE1 SINE B4 2 109 -56 5 958 1044 62 0 0 chr5 48931417 48931562 -103605697 + (CA)n Simple_repeat Simple_repeat 2 146 0 5 958 367 317 61 20 chr5 48931602 48931750 -103605509 + Lx8 LINE L1 6268 6541 -1103 5 958 198 0 0 0 chr5 48931762 48931784 -103605475 + (A)n Simple_repeat Simple_repeat 1 22 0 5 958 324 341 8 0 chr5 48931784 48931916 -103605343 + Lx8 LINE L1 6385 6517 -956 5 958 507 107 0 0 chr5 48931916 48931991 -103605268 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 958 41 0 0 0 chr5 48932096 48932137 -103605122 + AT_rich Low_complexity Low_complexity 1 41 0 5 958 189 213 0 0 chr5 48932292 48932339 -103604920 + CT-rich Low_complexity Low_complexity 3 49 0 5 958 25 31 0 0 chr5 48932457 48932489 -103604770 + AT_rich Low_complexity Low_complexity 1 32 0 5 958 2093 166 117 13 chr5 48932527 48933004 -103604255 + RLTR11A2 LTR ERVK 1 527 0 6 958 357 124 43 53 chr5 48935524 48935618 -103601641 - Lx4A LINE L1 -2 7056 6964 6 958 23 0 0 0 chr5 48936492 48936515 -103600744 + AT_rich Low_complexity Low_complexity 1 23 0 6 958 695 245 102 29 chr5 48937127 48937371 -103599888 + L1M4 LINE L1 4664 4925 -1221 6 958 426 317 49 0 chr5 48937371 48937513 -103599746 + MLT1A0 LTR MaLR 217 365 0 6 958 330 98 0 0 chr5 48937569 48937620 -103599639 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 6 958 3007 59 13 8 chr5 48937643 48938035 -103599224 + MTA_Mm LTR MaLR 3 396 0 6 958 194 172 0 0 chr5 48938947 48938976 -103598283 + L3 LINE CR1 704 732 -3757 6 958 208 132 53 0 chr5 48939905 48939943 -103597316 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 6 958 202 105 79 0 chr5 48940976 48941014 -103596245 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 6 958 21 0 0 0 chr5 48941195 48941216 -103596043 + AT_rich Low_complexity Low_complexity 1 21 0 6 958 206 118 0 0 chr5 48942271 48942305 -103594954 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 958 22 0 0 0 chr5 48943590 48943612 -103593647 + AT_rich Low_complexity Low_complexity 1 22 0 6 958 505 295 0 32 chr5 48943648 48943774 -103593485 + RSINE1 SINE B4 44 165 0 6 958 302 121 15 0 chr5 48944023 48944089 -103593170 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 6 958 330 270 176 7 chr5 48944895 48945048 -103592211 + Charlie2b DNA MER1_type 1835 2013 -769 6 958 285 252 69 29 chr5 48945191 48945293 -103591966 - MIR SINE MIR -52 210 105 6 958 1855 198 24 3 chr5 48945510 48945880 -103591379 + ORR1C1 LTR MaLR 1 378 0 6 958 678 329 10 5 chr5 48945964 48946172 -103591087 - Lx9 LINE L1 -792 6852 6644 6 958 284 339 18 0 chr5 48946165 48946277 -103590982 + Lx9 LINE L1 7073 7186 -458 6 958 23 54 0 0 chr5 48946387 48946424 -103590835 + AT_rich Low_complexity Low_complexity 1 37 0 6 958 543 256 51 0 chr5 48946493 48946610 -103590649 - RSINE1 SINE B4 -40 125 3 6 958 319 297 35 18 chr5 48946623 48946736 -103590523 - MER105 DNA DNA -45 159 45 6 958 1480 318 25 27 chr5 48946754 48947281 -103589978 - MER68 LTR ERVL -37 526 1 6 958 1146 43 0 0 chr5 48947344 48947482 -103589777 - B1_Mm SINE Alu -9 138 1 6 958 198 103 0 0 chr5 48948155 48948184 -103589075 + (TTA)n Simple_repeat Simple_repeat 1 29 0 6 958 341 321 194 6 chr5 48948251 48948411 -103588848 + ID_B1 SINE B4 10 199 -25 6 958 266 231 15 30 chr5 48948416 48948483 -103588776 + GA-rich Low_complexity Low_complexity 2 67 0 6 958 372 270 144 75 chr5 48949299 48949857 -103587402 + L1M2 LINE L1 2869 3469 -2671 6 958 387 106 0 0 chr5 48950099 48950165 -103587094 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 958 354 98 0 0 chr5 48950165 48950216 -103587043 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 958 409 312 98 23 chr5 48950252 48950508 -103586751 - B4A SINE B4 -16 276 2 6 958 1676 151 4 0 chr5 48952639 48952917 -103584342 - L1_Mm LINE L1 -429 5454 5176 6 958 6918 109 30 1 chr5 48952980 48954139 -103583120 + L1_Mus3 LINE L1 5445 6638 0 6 958 900 93 13 26 chr5 48954145 48954300 -103582959 + (GGAAA)n Simple_repeat Simple_repeat 3 155 0 6 958 204 97 0 0 chr5 48955314 48955345 -103581914 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 958 260 292 31 10 chr5 48956052 48956149 -103581110 + MIRb SINE MIR 118 216 -52 6 958 201 209 0 85 chr5 48957415 48957462 -103579797 + L2c LINE L2 3305 3347 -40 6 958 233 354 8 17 chr5 48957677 48957795 -103579464 - MIR SINE MIR -55 207 91 6 958 291 362 85 6 chr5 48958400 48958564 -103578695 - MIRb SINE MIR -71 197 21 6 958 266 272 57 73 chr5 48959873 48959996 -103577263 + MER5A1 DNA MER1_type 9 129 -37 6 958 180 0 0 0 chr5 48960714 48960734 -103576525 + (TGG)n Simple_repeat Simple_repeat 3 22 0 6 958 980 0 17 0 chr5 48961659 48961774 -103575485 + (TTCTC)n Simple_repeat Simple_repeat 1 117 0 6 958 258 105 0 0 chr5 48962471 48962509 -103574750 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 6 958 189 0 0 0 chr5 48963049 48963070 -103574189 + (GA)n Simple_repeat Simple_repeat 1 21 0 6 958 411 337 26 159 chr5 48964310 48964402 -103572857 + MLT1B LTR MaLR 11 102 -272 6 958 757 222 192 11 chr5 48964402 48964584 -103572675 + B3 SINE B2 2 216 0 6 958 493 330 19 90 chr5 48964584 48964911 -103572348 + MLT1B LTR MaLR 103 390 0 6 958 207 0 0 0 chr5 48965099 48965122 -103572137 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 958 1657 186 93 43 chr5 48965235 48965549 -103571710 - Lx9 LINE L1 0 7644 7312 6 958 324 0 0 0 chr5 48965549 48965585 -103571674 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 958 1657 186 93 43 chr5 48965585 48965730 -103571529 - Lx9 LINE L1 -333 7311 7163 6 958 185 0 0 39 chr5 48966775 48966801 -103570458 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 6 958 542 255 62 7 chr5 48967426 48967572 -103569687 - MER117 DNA MER1_type -43 154 1 6 958 23 0 0 0 chr5 48968264 48968287 -103568972 + AT_rich Low_complexity Low_complexity 1 23 0 6 958 804 333 18 55 chr5 48968312 48968693 -103568566 + Lx9 LINE L1 6867 7233 -411 6 958 891 234 14 28 chr5 48968734 48968945 -103568314 - ORR1D1 LTR MaLR -1 373 166 6 958 3353 108 101 31 chr5 48969103 48969647 -103567612 + Lx LINE L1 6040 6621 -33 6 958 180 0 0 0 chr5 48969647 48969667 -103567592 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6 958 3706 197 23 12 chr5 48969850 48970626 -103566633 + Lx3C LINE L1 6190 6974 -2 6 958 258 105 0 0 chr5 48970639 48970677 -103566582 + (A)n Simple_repeat Simple_repeat 1 38 0 6 958 3743 195 89 5 chr5 48970681 48971415 -103565844 + Lx5 LINE L1 6253 7047 -3 6 958 340 306 6 42 chr5 48971694 48971861 -103565398 + GA-rich Low_complexity Low_complexity 3 163 0 6 958 293 344 53 8 chr5 48971861 48971993 -103565266 - MIRc SINE MIR -130 138 1 6 958 3742 159 192 63 chr5 48972017 48972927 -103564332 - RLTR25B LTR ERVK 0 1028 1 6 958 262 349 111 28 chr5 48972978 48973158 -103564101 - MIRb SINE MIR -21 247 53 6 958 21 0 0 0 chr5 48975014 48975035 -103562224 + AT_rich Low_complexity Low_complexity 1 21 0 6 958 241 190 38 12 chr5 48975153 48975233 -103562026 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 958 249 33 0 0 chr5 48975748 48975778 -103561481 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 6 958 614 294 27 53 chr5 48976728 48976915 -103560344 + Lx8 LINE L1 6563 6744 -729 6 958 498 222 5 25 chr5 48976944 48977087 -103560172 - B1_Mm SINE Alu 0 147 13 6 958 961 259 115 7 chr5 48977090 48977386 -103559873 + Lx8 LINE L1 6746 7073 -400 6 958 1526 189 81 17 chr5 48977394 48977690 -103559569 - ORR1B2 LTR MaLR -52 315 1 6 958 1103 164 82 0 chr5 48977700 48977908 -103559351 - ORR1B2-int LTR MaLR -27 1482 1258 6 958 1142 29 0 0 chr5 48977908 48978047 -103559212 + LTRIS_Mus LTR ERV1 1 139 -448 6 958 726 239 0 0 chr5 48979009 48979147 -103558112 - B1_Mm SINE Alu 0 147 10 6 958 288 0 0 0 chr5 48980905 48980937 -103556322 + (T)n Simple_repeat Simple_repeat 1 32 0 6 958 191 44 0 82 chr5 48981873 48981922 -103555337 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 6 958 712 123 145 8 chr5 48981922 48982053 -103555206 - B1_Mur3 SINE Alu 0 149 1 6 958 291 331 128 11 chr5 48982919 48983099 -103554160 + Cheshire DNA MER1_type 22 222 -2198 6 958 184 320 81 20 chr5 48983196 48983295 -103553964 + MER5A DNA MER1_type 14 118 -71 6 958 181 333 14 57 chr5 48983525 48983595 -103553664 - MIRb SINE MIR -81 187 121 6 958 257 260 71 20 chr5 48983693 48983791 -103553468 + MER90a LTR ERV1 10 112 -463 6 958 1413 165 61 4 chr5 48983831 48984093 -103553166 + Lx2 LINE L1 6706 6982 -15 6 958 670 352 25 31 chr5 48984162 48984479 -103552780 + MER90a LTR ERV1 298 612 -2 6 958 489 17 0 0 chr5 48985397 48985455 -103551804 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 958 189 0 0 0 chr5 48986282 48986303 -103550956 + (T)n Simple_repeat Simple_repeat 1 21 0 6 958 1506 99 0 0 chr5 48986650 48986851 -103550408 - L1_Mm LINE L1 -142 5741 5541 6 958 675 272 93 10 chr5 48987267 48987460 -103549799 - B3 SINE B2 -2 214 6 6 958 195 69 0 0 chr5 48987680 48987709 -103549550 + (TTTTTG)n Simple_repeat Simple_repeat 6 34 0 6 958 1157 54 0 13 chr5 48987709 48987858 -103549401 - B1_Mus2 SINE Alu 0 147 1 6 958 663 217 62 0 chr5 48987866 48987995 -103549264 - B1_Mur2 SINE Alu -7 142 6 6 958 235 336 96 103 chr5 48987995 48988008 -103549251 - B4 SINE B4 -69 219 79 6 958 266 282 26 0 chr5 48989905 48989983 -103547276 + (TATATG)n Simple_repeat Simple_repeat 4 83 0 6 958 225 0 0 0 chr5 48991316 48991341 -103545918 + (TGGGGG)n Simple_repeat Simple_repeat 3 27 0 6 958 286 271 160 8 chr5 48992222 48992341 -103544918 - MIR SINE MIR -13 249 113 6 958 261 0 0 0 chr5 48993130 48993159 -103544100 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 6 958 505 300 26 54 chr5 48994001 48994214 -103543045 + MER34A LTR ERV1 4 216 -371 6 958 527 294 48 44 chr5 48994522 48994728 -103542531 + B3 SINE B2 1 207 -9 6 958 243 210 0 0 chr5 48994759 48994771 -103542488 + A-rich Low_complexity Low_complexity 1 12 0 6 958 835 156 43 0 chr5 48994771 48994912 -103542347 + B1_Mus2 SINE Alu 1 147 0 6 958 243 210 0 0 chr5 48994912 48994961 -103542298 + A-rich Low_complexity Low_complexity 13 61 0 6 958 2624 97 8 5 chr5 48996614 48996987 -103540272 + Lx LINE L1 6270 6643 -11 6 958 498 33 0 0 chr5 48996987 48997047 -103540212 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 6 958 209 268 18 0 chr5 48997062 48997118 -103540141 + GA-rich Low_complexity Low_complexity 3 59 0 6 958 1932 47 0 0 chr5 48997191 48997427 -103539832 + L1Md_A LINE L1 6347 6582 0 7 958 1084 191 19 10 chr5 48998791 48998997 -103538262 - B3 SINE B2 -1 215 8 7 958 360 297 41 8 chr5 48999217 48999358 -103537901 - MLT1D LTR MaLR -8 497 381 7 958 335 337 70 85 chr5 48999456 48999657 -103537602 - MLT1D LTR MaLR -296 209 12 7 958 426 85 0 0 chr5 48999795 48999854 -103537405 + (TG)n Simple_repeat Simple_repeat 1 59 0 7 958 385 260 44 39 chr5 49000371 49000499 -103536760 + B4A SINE B4 131 265 -27 1 958 848 117 0 49 chr5 49000709 49000752 -103536507 - Lx2B LINE L1 -564 6436 6400 2 958 3708 134 105 49 chr5 49000752 49001530 -103535729 + RLTR13B2 LTR ERVK 1 822 0 3 958 848 117 0 49 chr5 49001530 49001630 -103535629 - Lx2B LINE L1 -601 6399 6300 2 958 3146 152 39 2 chr5 49001631 49002165 -103535094 + Lx2 LINE L1 6444 6997 0 4 958 26 50 0 0 chr5 49002387 49002427 -103534832 + AT_rich Low_complexity Low_complexity 1 40 0 5 958 219 264 86 19 chr5 49002625 49002726 -103534533 - MIRc SINE MIR -98 164 64 6 958 912 44 0 0 chr5 49003106 49003219 -103534040 + (TG)n Simple_repeat Simple_repeat 2 114 0 7 958 23 0 0 0 chr5 49003384 49003407 -103533852 + AT_rich Low_complexity Low_complexity 1 23 0 8 958 990 145 0 0 chr5 49003796 49003962 -103533297 + (TTTCC)n Simple_repeat Simple_repeat 5 170 0 9 958 351 0 0 0 chr5 49003963 49004002 -103533257 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1 958 758 105 42 0 chr5 49007563 49007706 -103529553 + (GGGAGA)n Simple_repeat Simple_repeat 2 150 0 1 958 21 36 0 0 chr5 49007780 49007808 -103529451 + AT_rich Low_complexity Low_complexity 1 28 0 1 958 272 375 33 19 chr5 49007865 49008033 -103529226 + L2a LINE L2 2916 3085 -341 1 958 201 143 0 0 chr5 49008310 49008345 -103528914 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1 958 212 122 24 0 chr5 49008980 49009021 -103528238 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 1 958 180 291 18 18 chr5 49010032 49010088 -103527171 + MIR SINE MIR 89 144 -64 1 958 426 180 0 0 chr5 49015418 49015518 -103521741 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 958 505 347 37 48 chr5 49016492 49016867 -103520392 - MARNA DNA Mariner -1 585 215 1 958 216 0 0 0 chr5 49017047 49017071 -103520188 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1 958 304 119 0 33 chr5 49018431 49018492 -103518767 + A-rich Low_complexity Low_complexity 2 60 0 2 958 323 184 58 0 chr5 49018840 49018927 -103518332 + L1MB4 LINE L1 6088 6179 -1 2 958 410 0 61 15 chr5 49019414 49019480 -103517779 + (TTTG)n Simple_repeat Simple_repeat 4 72 0 2 958 611 126 25 48 chr5 49019668 49019813 -103517446 + B1_Mm SINE Alu 6 140 -9 2 958 244 296 46 115 chr5 49019831 49019961 -103517298 + B4A SINE B4 82 202 -90 2 958 455 262 25 30 chr5 49019961 49020158 -103517101 + Lx6 LINE L1 7246 7441 -19 2 959 539 302 69 91 chr5 49021115 49021574 -103515685 - MLT1B LTR MaLR -3 464 6 2 959 397 323 92 99 chr5 49022078 49022270 -103514989 - B4 SINE B4 -1 291 108 2 959 447 19 0 0 chr5 49022270 49022322 -103514937 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 959 397 323 92 99 chr5 49022322 49022421 -103514838 - B4 SINE B4 -185 107 2 2 959 318 161 0 0 chr5 49024212 49024274 -103512985 + L1M4b LINE L1 1498 1559 -5775 2 959 255 309 22 7 chr5 49024419 49024556 -103512703 + L1M4 LINE L1 5195 5333 -813 3 959 345 272 191 9 chr5 49024556 49024671 -103512588 + B3A SINE B2 1 136 -62 3 959 555 148 0 0 chr5 49024686 49024821 -103512438 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 3 959 27 29 0 0 chr5 49024868 49024902 -103512357 + AT_rich Low_complexity Low_complexity 1 34 0 3 959 355 259 142 93 chr5 49024944 49025148 -103512111 + L1M4 LINE L1 5377 5590 -588 3 959 23 0 0 0 chr5 49025964 49025987 -103511272 + AT_rich Low_complexity Low_complexity 1 23 0 3 959 270 205 0 0 chr5 49026130 49026208 -103511051 + CT-rich Low_complexity Low_complexity 2 79 0 3 959 219 36 0 0 chr5 49026211 49026239 -103511020 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 959 288 366 21 0 chr5 49026347 49026489 -103510770 - Lx9 LINE L1 -294 7350 7206 3 959 4235 102 23 2 chr5 49027153 49027760 -103509499 + L1_Mus4 LINE L1 6013 6632 -4 3 959 3796 57 6 12 chr5 49028555 49029050 -103508209 - L1Md_F2 LINE L1 -3 6579 6088 3 959 255 61 0 0 chr5 49029179 49029212 -103508047 + (T)n Simple_repeat Simple_repeat 1 33 0 4 959 36254 30 0 0 chr5 49029311 49035538 -103501721 - L1Md_T LINE L1 0 6585 262 4 959 564 89 0 0 chr5 49035559 49035638 -103501621 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 959 283 302 65 0 chr5 49035640 49035809 -103501450 - Lx9 LINE L1 -151 7493 7314 4 959 424 268 165 14 chr5 49035912 49036124 -103501135 - Lx9 LINE L1 -978 6666 6423 4 959 331 325 15 45 chr5 49037634 49037819 -103499440 - MER58A DNA MER1_type -12 212 37 4 959 335 94 94 0 chr5 49038562 49038626 -103498633 - L1_Mm LINE L1 -3025 2858 2789 4 959 5356 88 0 26 chr5 49038626 49039385 -103497874 + L1_Mus1 LINE L1 5828 6566 -1 4 959 401 240 107 15 chr5 49039470 49039601 -103497658 + B1_Mur3 SINE Alu 1 143 -6 4 959 378 0 0 0 chr5 49039936 49039978 -103497281 + (TTA)n Simple_repeat Simple_repeat 1 42 0 4 959 1288 49 6 0 chr5 49039980 49040142 -103497117 - B2_Mm2 SINE B2 -31 164 2 4 959 417 39 0 0 chr5 49041493 49041544 -103495715 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 959 201 39 0 0 chr5 49043793 49043819 -103493440 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 959 24 0 0 0 chr5 49044061 49044085 -103493174 + AT_rich Low_complexity Low_complexity 1 24 0 5 959 4942 12 0 0 chr5 49046464 49047054 -103490205 + L1Md_T LINE L1 4997 5586 -297 5 959 8448 34 0 0 chr5 49047054 49048050 -103489209 + L1Md_T LINE L1 5587 6582 0 5 959 539 282 18 60 chr5 49048180 49048346 -103488913 - RSINE1 SINE B4 0 165 7 5 959 21 0 0 0 chr5 49048373 49048394 -103488865 + AT_rich Low_complexity Low_complexity 1 21 0 5 959 394 400 23 12 chr5 49048640 49048812 -103488447 + MER82 DNA MER2_type 472 645 -8 5 959 391 273 48 78 chr5 49049252 49049419 -103487840 - MER5A1 DNA MER1_type -2 164 3 5 959 5483 54 4 0 chr5 49049776 49050458 -103486801 + L1Md_F2 LINE L1 5898 6582 0 5 959 234 0 0 0 chr5 49051458 49051484 -103485775 + (T)n Simple_repeat Simple_repeat 1 26 0 5 959 1165 68 0 0 chr5 49051484 49051631 -103485628 - B1_Mm SINE Alu 0 147 1 6 959 1396 52 0 0 chr5 49051658 49051830 -103485429 - L1_Mus1 LINE L1 -1 6566 6395 6 959 338 0 0 0 chr5 49051830 49051869 -103485390 + L1_Mus2 LINE L1 6190 6228 -338 6 959 193 371 68 0 chr5 49051967 49052099 -103485160 - MIR SINE MIR -18 244 104 6 959 243 0 0 0 chr5 49052147 49052174 -103485085 + (T)n Simple_repeat Simple_repeat 1 27 0 6 959 225 307 97 73 chr5 49052928 49053093 -103484166 + L2a LINE L2 3257 3425 -1 6 959 227 312 10 40 chr5 49053319 49053419 -103483840 + GA-rich Low_complexity Low_complexity 1 97 0 6 959 369 0 0 0 chr5 49053697 49053738 -103483521 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 959 430 290 85 9 chr5 49054946 49055158 -103482101 + L1MA4 LINE L1 5674 5901 -399 6 959 24 0 0 0 chr5 49055410 49055434 -103481825 + AT_rich Low_complexity Low_complexity 1 24 0 6 959 230 254 42 0 chr5 49056112 49056183 -103481076 + L1MC2 LINE L1 6023 6096 -248 7 959 326 295 83 30 chr5 49057000 49057133 -103480126 + MLT1A LTR MaLR 60 210 -164 7 959 557 199 0 8 chr5 49058473 49058605 -103478654 + GA-rich Low_complexity Low_complexity 2 132 0 7 959 250 297 0 56 chr5 49059639 49059746 -103477513 + MLT1A LTR MaLR 271 371 -3 7 959 3074 8 43 0 chr5 49060998 49061350 -103475909 + IAPLTR1_Mm LTR ERVK 1 367 0 7 959 4700 61 46 16 chr5 49061350 49061986 -103475273 + IAPEz-int LTR ERVK 8 662 -5819 7 959 442 66 0 32 chr5 49061986 49062049 -103475210 + IAPEz-int LTR ERVK 1359 1419 -5062 7 959 1821 119 4 4 chr5 49062038 49062300 -103474959 + IAPEz-int LTR ERVK 2236 2497 -5183 7 959 932 73 24 0 chr5 49062297 49062420 -103474839 + IAPEz-int LTR ERVK 4785 4910 -2770 7 959 26367 15 1 0 chr5 49062420 49065373 -103471886 + IAPEz-int LTR ERVK 3525 6481 0 7 959 3074 8 43 0 chr5 49065373 49065725 -103471534 + IAPLTR1_Mm LTR ERVK 1 367 0 7 959 22 0 0 0 chr5 49065804 49065826 -103471433 + AT_rich Low_complexity Low_complexity 1 22 0 7 959 1290 205 51 34 chr5 49066892 49067245 -103470014 + RLTR10D LTR ERVK 1 359 0 7 959 362 287 31 54 chr5 49067714 49067843 -103469416 - Tigger5 DNA MER2_type -1 2405 2280 7 959 508 382 39 5 chr5 49067847 49068052 -103469207 - Tigger5 DNA MER2_type -2179 227 16 7 959 470 266 74 89 chr5 49068130 49068320 -103468939 + MLT1B LTR MaLR 16 202 -188 7 959 6675 115 24 29 chr5 49068322 49069634 -103467625 + Lx LINE L1 5336 6640 -14 7 959 384 331 49 22 chr5 49069634 49069819 -103467440 + MLT1B LTR MaLR 162 351 -39 7 959 288 308 120 0 chr5 49070156 49070273 -103466986 - MLT2B4 LTR ERVL -422 134 4 8 959 29 28 0 0 chr5 49071803 49071839 -103465420 + AT_rich Low_complexity Low_complexity 1 36 0 8 959 282 263 13 26 chr5 49071947 49072025 -103465234 - Lx9 LINE L1 -515 7129 7053 8 959 2165 251 51 27 chr5 49072485 49073038 -103464221 - Lx6 LINE L1 0 7460 6895 8 959 513 0 0 0 chr5 49073042 49073099 -103464160 + (TC)n Simple_repeat Simple_repeat 2 58 0 8 959 30 59 0 0 chr5 49074189 49074240 -103463019 + AT_rich Low_complexity Low_complexity 1 51 0 8 959 225 367 119 37 chr5 49074624 49074978 -103462281 + L2a LINE L2 2916 3298 -128 8 959 37 23 0 0 chr5 49075351 49075395 -103461864 + AT_rich Low_complexity Low_complexity 1 44 0 8 959 295 335 45 28 chr5 49075520 49075698 -103461561 - L1MDa LINE L1 -6167 466 286 8 959 1177 202 40 37 chr5 49076264 49076391 -103460868 - Lx5 LINE L1 -461 6589 6488 8 959 1129 210 210 18 chr5 49076391 49076684 -103460575 + RMER10B LTR ERVL 1 339 -59 9 959 432 0 0 0 chr5 49076684 49076732 -103460527 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 959 1129 210 210 18 chr5 49076732 49076772 -103460487 + RMER10B LTR ERVL 340 397 -1 9 959 1177 189 48 28 chr5 49076772 49076915 -103460344 - Lx5 LINE L1 -563 6487 6334 8 959 573 340 51 19 chr5 49077069 49077285 -103459974 + B4 SINE B4 2 224 -68 9 959 195 229 21 0 chr5 49077332 49077380 -103459879 + L2 LINE L2 2806 2854 -565 9 959 22 56 0 0 chr5 49077403 49077439 -103459820 + AT_rich Low_complexity Low_complexity 1 36 0 9 959 198 389 61 8 chr5 49077445 49077577 -103459682 + MIRc SINE MIR 124 262 -6 9 959 198 0 0 0 chr5 49077629 49077651 -103459608 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 959 26 0 0 0 chr5 49078291 49078317 -103458942 + AT_rich Low_complexity Low_complexity 1 26 0 9 959 2107 118 12 27 chr5 49079579 49079911 -103457348 - ORR1A2 LTR MaLR 0 327 1 9 959 1154 294 165 31 chr5 49080518 49081002 -103456257 - Lx5 LINE L1 -18 7032 6484 9 959 396 339 48 7 chr5 49081007 49081232 -103456027 - Lx5 LINE L1 -690 6360 6102 9 959 30292 83 39 1 chr5 49081715 49086720 -103450539 + L1Md_F2 LINE L1 387 5586 -297 1 959 7587 74 2 4 chr5 49086720 49087716 -103449543 + L1Md_F2 LINE L1 5587 6580 -2 1 959 473 211 90 52 chr5 49087724 49087879 -103449380 - RMER3D-int LTR ERVK -548 2294 2134 1 959 468 0 0 0 chr5 49089424 49089476 -103447783 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 959 648 70 0 0 chr5 49090024 49090110 -103447149 + (CGAAA)n Simple_repeat Simple_repeat 5 90 0 1 959 525 313 7 13 chr5 49090153 49090302 -103446957 + MLT1C LTR MaLR 320 467 0 1 959 258 353 99 47 chr5 49091285 49091496 -103445763 + ORR1E LTR MaLR 35 256 -103 1 959 904 280 33 78 chr5 49091621 49091927 -103445332 - ORR1E LTR MaLR -42 317 26 1 959 184 30 29 29 chr5 49093728 49093762 -103443497 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 959 329 329 125 71 chr5 49093794 49094105 -103443154 + MTE-int LTR MaLR 1196 1523 -57 1 959 306 344 52 46 chr5 49096002 49096219 -103441040 + MLT1F LTR MaLR 93 307 -262 1 959 357 298 137 28 chr5 49098192 49098403 -103438856 + L1M5 LINE L1 5589 5822 -357 1 959 220 368 0 0 chr5 49098417 49098485 -103438774 + BC1_Mm scRNA scRNA 6 73 -79 1 959 482 98 12 0 chr5 49098491 49098573 -103438686 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 959 548 295 78 0 chr5 49098749 49098915 -103438344 - Lx8 LINE L1 -321 7152 6974 1 959 684 195 0 0 chr5 49098954 49099103 -103438156 + GA-rich Low_complexity Low_complexity 3 151 0 1 959 323 284 9 18 chr5 49099110 49099221 -103438038 + Lx8 LINE L1 7357 7466 -7 1 959 415 293 132 28 chr5 49099418 49099562 -103437697 + RSINE1 SINE B4 7 165 0 1 959 335 60 0 20 chr5 49099947 49099998 -103437261 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1 959 14502 152 55 15 chr5 49099998 49103565 -103433694 - Lx4B LINE L1 -22 6978 3227 1 959 981 229 80 90 chr5 49103597 49103950 -103433309 + ORR1C2 LTR MaLR 1 384 0 1 959 26 0 0 0 chr5 49104063 49104089 -103433170 + AT_rich Low_complexity Low_complexity 1 26 0 1 959 293 365 41 14 chr5 49104859 49105006 -103432253 + MIRb SINE MIR 23 173 -95 1 959 21 0 0 0 chr5 49105511 49105532 -103431727 + AT_rich Low_complexity Low_complexity 1 21 0 1 959 699 270 494 5 chr5 49105651 49105786 -103431473 - MTD LTR MaLR -21 398 199 1 959 366 23 0 0 chr5 49105786 49105829 -103431430 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 959 699 283 57 24 chr5 49105829 49106008 -103431251 - MTD LTR MaLR -221 198 12 1 959 552 326 129 36 chr5 49106452 49106786 -103430473 + MLT1A0 LTR MaLR 1 365 0 1 959 290 259 0 65 chr5 49107003 49107065 -103430194 - ID4 SINE ID -17 66 9 1 959 1283 226 80 3 chr5 49107591 49107879 -103429380 + Lx6 LINE L1 7147 7456 -4 1 959 446 0 19 0 chr5 49110615 49110669 -103426590 + (TTA)n Simple_repeat Simple_repeat 3 57 0 1 959 2673 78 13 5 chr5 49110669 49111058 -103426201 - L1_Mus3 LINE L1 -17 6621 6230 1 959 285 370 82 18 chr5 49111356 49111574 -103425685 - MIR SINE MIR -18 244 25 1 959 189 0 0 0 chr5 49113284 49113305 -103423954 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 1 959 3647 63 0 4 chr5 49113338 49113839 -103423420 - L1_Mus1 LINE L1 0 6567 6104 1 959 25 0 0 0 chr5 49114736 49114761 -103422498 + AT_rich Low_complexity Low_complexity 1 25 0 1 959 228 196 39 0 chr5 49115405 49115456 -103421803 - Lx8 LINE L1 -1194 6279 6227 1 959 399 291 35 0 chr5 49115469 49115610 -103421649 + L1M3 LINE L1 5507 5652 -537 1 959 372 258 148 35 chr5 49115610 49115779 -103421480 + L1_Rod LINE L1 5643 5830 -17 1 959 467 242 137 43 chr5 49116023 49116256 -103421003 - Charlie1b DNA MER1_type -197 326 72 1 959 987 261 82 44 chr5 49116573 49116913 -103420346 + ORR1D2 LTR MaLR 1 353 -17 1 959 3064 58 10 5 chr5 49117327 49117723 -103419536 + L1Md_F2 LINE L1 6173 6570 -12 1 959 2386 52 22 6 chr5 49117887 49118199 -103419060 + IAPLTR2b LTR ERVK 1 317 -10 1 959 326 131 0 32 chr5 49118380 49118443 -103418816 + CT-rich Low_complexity Low_complexity 3 63 0 1 959 1019 120 0 6 chr5 49118490 49118658 -103418601 + (TTCC)n Simple_repeat Simple_repeat 3 169 0 1 959 725 196 7 7 chr5 49118662 49118806 -103418453 - B1_Mur4 SINE Alu -5 145 2 1 959 237 356 0 22 chr5 49120421 49120510 -103416749 + L2a LINE L2 3339 3425 -1 1 959 25 0 0 0 chr5 49120662 49120687 -103416572 + AT_rich Low_complexity Low_complexity 1 25 0 1 959 369 0 0 0 chr5 49121452 49121493 -103415766 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 959 6406 12 0 0 chr5 49122871 49123598 -103413661 + L1Md_T LINE L1 4860 5586 -297 1 959 8359 33 1 0 chr5 49123598 49124581 -103412678 + L1Md_T LINE L1 5587 6570 -12 1 959 4048 65 6 4 chr5 49124628 49125165 -103412094 + L1Md_F2 LINE L1 6044 6581 -1 1 959 524 235 113 0 chr5 49125263 49125378 -103411881 - RSINE1 SINE B4 -35 130 3 1 959 325 340 64 0 chr5 49125481 49125575 -103411684 - PB1D9 SINE Alu -11 109 10 1 959 330 237 0 50 chr5 49125501 49125581 -103411678 - MT2B2 LTR ERVL -340 244 169 1 959 696 111 0 0 chr5 49126336 49126444 -103410815 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 1 959 721 252 89 128 chr5 49127480 49127871 -103409388 + MTE2a LTR MaLR 1 376 -3 1 959 23 0 0 0 chr5 49129823 49129846 -103407413 + AT_rich Low_complexity Low_complexity 1 23 0 1 959 594 75 0 0 chr5 49130791 49130871 -103406388 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 959 1535 62 0 0 chr5 49130879 49131074 -103406185 - L1_Mus1 LINE L1 -2 6565 6371 1 959 29 0 0 0 chr5 49132685 49132714 -103404545 + AT_rich Low_complexity Low_complexity 1 29 0 1 959 2654 80 23 8 chr5 49132744 49133135 -103404124 + Lx LINE L1 6258 6654 0 1 959 257 0 0 29 chr5 49133147 49133181 -103404078 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 959 969 240 108 29 chr5 49133688 49134031 -103403228 - ORR1D1 LTR MaLR -4 370 1 1 959 313 284 0 0 chr5 49134954 49135021 -103402238 + ID_B1 SINE B4 150 216 -8 1 959 241 425 100 4 chr5 49136046 49136287 -103400972 + MLT1E2 LTR MaLR 111 374 -253 1 959 311 383 0 61 chr5 49137268 49137382 -103399877 - RSINE1 SINE B4 -6 159 53 1 959 204 288 45 0 chr5 49137807 49137873 -103399386 + MER5A DNA MER1_type 46 114 -75 1 959 840 85 0 0 chr5 49138914 49139032 -103398227 + (CAATC)n Simple_repeat Simple_repeat 2 119 0 1 959 3887 267 102 16 chr5 49139153 49140599 -103396660 + RMER1A Other Other 1 1030 0 1 959 459 0 0 0 chr5 49140699 49140750 -103396509 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 959 21 36 0 0 chr5 49141723 49141751 -103395508 + AT_rich Low_complexity Low_complexity 1 28 0 1 959 21 0 0 0 chr5 49141988 49142009 -103395250 + AT_rich Low_complexity Low_complexity 1 21 0 1 959 249 33 0 0 chr5 49142423 49142453 -103394806 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1 959 225 234 0 0 chr5 49143043 49143107 -103394152 + T-rich Low_complexity Low_complexity 1 64 0 1 959 26 0 0 0 chr5 49143164 49143190 -103394069 + AT_rich Low_complexity Low_complexity 1 26 0 1 959 25 31 0 0 chr5 49143431 49143463 -103393796 + AT_rich Low_complexity Low_complexity 1 32 0 1 959 279 0 0 0 chr5 49143645 49143676 -103393583 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 959 432 0 0 0 chr5 49143710 49143758 -103393501 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 959 634 302 11 22 chr5 49144963 49145175 -103392084 + B3A SINE B2 8 211 -5 1 959 475 258 211 114 chr5 49145340 49145620 -103391639 - MLT1A LTR MaLR -22 352 46 1 959 2141 55 0 118 chr5 49145740 49146071 -103391188 + RLTR10B LTR ERVK 1 292 0 1 959 885 136 90 0 chr5 49146090 49146245 -103391014 + L1Md_F2 LINE L1 6402 6570 -12 1 959 406 350 125 20 chr5 49146275 49146578 -103390681 + L2 LINE L2 2577 2911 -508 1 959 3398 211 53 7 chr5 49146629 49147310 -103389949 + Lx5 LINE L1 6013 6724 -326 1 959 470 139 208 0 chr5 49147309 49147410 -103389849 + Lx3C LINE L1 3573 3694 -2192 1 959 4422 191 48 10 chr5 49147405 49148634 -103388625 + Lx3C LINE L1 5029 6973 -3 1 959 430 149 128 0 chr5 49149087 49149181 -103388078 - Lx LINE L1 -7 6647 6542 1 959 820 140 23 8 chr5 49149157 49149287 -103387972 - Lx LINE L1 -374 6280 6149 1 959 2457 104 52 1 chr5 49149287 49149666 -103387593 + Lx LINE L1 5807 6536 -514 1 959 462 114 0 0 chr5 49150468 49150556 -103386703 + (T)n Simple_repeat Simple_repeat 1 88 0 1 959 1137 82 7 0 chr5 49150556 49150703 -103386556 - B1_Mus1 SINE Alu 0 148 1 1 959 24 0 0 0 chr5 49150757 49150781 -103386478 + AT_rich Low_complexity Low_complexity 1 24 0 1 959 352 364 70 16 chr5 49150790 49151033 -103386226 + L1MC LINE L1 4545 4800 -1346 1 959 710 326 30 41 chr5 49151134 49151609 -103385650 + L1M5 LINE L1 5254 5735 -429 1 960 206 260 20 0 chr5 49152761 49152811 -103384448 + GA-rich Low_complexity Low_complexity 3 53 0 1 960 359 261 279 17 chr5 49153242 49153421 -103383838 - HAL1-3A_ME LINE L1 -657 2201 1976 1 960 701 286 97 23 chr5 49153467 49153725 -103383534 - B4A SINE B4 -14 278 2 1 960 253 117 16 16 chr5 49157114 49157175 -103380084 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 960 4870 57 9 13 chr5 49157931 49158568 -103378691 + L1_Mus2 LINE L1 5931 6565 -1 1 960 809 54 0 9 chr5 49158588 49158700 -103378559 + (GAAA)n Simple_repeat Simple_repeat 2 112 0 1 960 191 243 65 39 chr5 49158807 49158884 -103378375 - MIR SINE MIR -72 136 58 1 960 195 312 73 59 chr5 49159997 49160133 -103377126 + MIRb SINE MIR 20 157 -111 1 960 708 119 0 0 chr5 49160150 49160259 -103377000 + (TA)n Simple_repeat Simple_repeat 2 110 0 1 960 283 358 81 20 chr5 49160678 49160926 -103376333 + MER67D LTR ERV1 240 502 -12 1 960 968 233 15 5 chr5 49161788 49161991 -103375268 - URR1B DNA MER1_type -20 205 1 2 960 182 59 88 0 chr5 49163141 49163175 -103374084 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 2 960 897 239 47 5 chr5 49163311 49163504 -103373755 + B3 SINE B2 5 205 -11 2 960 391 397 29 5 chr5 49163539 49163744 -103373515 - MLT1A0 LTR MaLR -128 237 28 2 960 309 339 111 30 chr5 49164218 49164416 -103372843 - B3 SINE B2 -2 214 1 2 960 3724 182 92 15 chr5 49164434 49165226 -103372033 + RLTR25B LTR ERVK 1 853 -175 2 960 230 163 102 0 chr5 49165300 49165349 -103371910 + U7 snRNA snRNA 8 61 -2 2 960 218 32 32 0 chr5 49165406 49165437 -103371822 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 960 661 250 143 60 chr5 49165485 49165600 -103371659 + RLTR25B LTR ERVK 832 962 -141 2 960 402 21 0 0 chr5 49165600 49165647 -103371612 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 960 432 0 0 0 chr5 49165647 49165694 -103371565 + (GA)n Simple_repeat Simple_repeat 2 49 0 2 960 661 250 143 60 chr5 49165694 49165828 -103371431 + RLTR25B LTR ERVK 963 1102 -1 2 960 24 0 0 0 chr5 49166477 49166501 -103370758 + AT_rich Low_complexity Low_complexity 1 24 0 2 960 317 379 17 0 chr5 49166520 49166636 -103370623 - B1F SINE Alu -29 120 3 2 960 1061 328 85 47 chr5 49166949 49167444 -103369815 + Tigger7 DNA MER2_type 1 514 -1977 2 960 953 153 6 0 chr5 49167930 49168106 -103369153 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 2 960 486 0 0 0 chr5 49168600 49168654 -103368605 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 960 1164 70 0 0 chr5 49168655 49168798 -103368461 - B1_Mus2 SINE Alu -4 143 1 2 960 22 0 0 0 chr5 49169186 49169208 -103368051 + AT_rich Low_complexity Low_complexity 1 22 0 2 960 564 247 172 32 chr5 49169337 49169742 -103367517 - L1MA8 LINE L1 -138 6153 5691 2 960 367 282 10 0 chr5 49169833 49169936 -103367323 - L1MA8 LINE L1 -747 5544 5441 2 960 260 308 112 56 chr5 49170259 49170438 -103366821 + MIRb SINE MIR 12 200 -68 2 960 232 331 38 61 chr5 49170761 49170893 -103366366 + MamSINE1 SINE tRNA 8 136 -154 2 960 239 265 116 66 chr5 49170836 49170957 -103366302 - RLTR19A LTR ERVK -355 141 15 2 960 1119 71 11 29 chr5 49171833 49172190 -103365069 + (TTTC)n Simple_repeat Simple_repeat 1 350 0 2 960 441 0 0 0 chr5 49172193 49172242 -103365017 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 2 960 439 341 36 12 chr5 49172354 49172606 -103364653 - Lx9 LINE L1 -182 7462 7205 2 960 495 0 0 0 chr5 49173399 49173454 -103363805 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 960 247 310 88 20 chr5 49174013 49174115 -103363144 + MIRc SINE MIR 47 155 -113 2 960 378 0 0 0 chr5 49174188 49174230 -103363029 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 960 289 294 136 34 chr5 49174243 49174491 -103362768 - B4 SINE B4 0 292 6 2 960 1285 130 53 4 chr5 49174818 49175065 -103362194 + Lx LINE L1 6396 6654 0 2 960 21 0 0 0 chr5 49176461 49176482 -103360777 + AT_rich Low_complexity Low_complexity 1 21 0 2 960 250 365 28 19 chr5 49178683 49178789 -103358470 - Cheshire DNA MER1_type -2140 280 174 2 960 346 293 12 0 chr5 49178906 49178988 -103358271 - B4A SINE B4 -198 94 12 2 960 448 250 76 17 chr5 49179174 49179292 -103357967 - RSINE1 SINE B4 -36 129 5 2 960 269 296 8 115 chr5 49181538 49181668 -103355591 + MTE2b LTR MaLR 150 265 -114 2 960 6429 51 0 1 chr5 49182128 49182918 -103354341 - L1Md_F2 LINE L1 -12 6570 5782 2 960 339 197 31 25 chr5 49183663 49183766 -103353493 - L1M5 LINE L1 -475 5765 5666 2 960 240 86 0 0 chr5 49183766 49183801 -103353458 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 960 911 307 29 51 chr5 49183810 49184217 -103353042 + MTE2a LTR MaLR 1 405 -14 2 960 730 319 5 10 chr5 49184656 49184865 -103352394 - B3 SINE B2 -1 215 8 2 960 276 100 0 0 chr5 49185312 49185352 -103351907 + (CATATA)n Simple_repeat Simple_repeat 4 43 0 2 960 24 0 0 0 chr5 49185395 49185419 -103351840 + AT_rich Low_complexity Low_complexity 1 24 0 2 960 4474 166 8 8 chr5 49185682 49186451 -103350808 + Lx4A LINE L1 6286 7054 -4 2 960 1148 87 4 29 chr5 49188287 49188570 -103348689 + (TATG)n Simple_repeat Simple_repeat 1 275 0 2 960 3016 67 5 12 chr5 49188648 49189054 -103348205 - L1Md_F2 LINE L1 -12 6570 6168 2 960 447 19 0 0 chr5 49189176 49189228 -103348031 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 960 518 253 64 12 chr5 49189823 49189995 -103347264 + B3A SINE B2 1 181 -17 2 960 875 231 11 6 chr5 49190053 49190236 -103347023 - B3 SINE B2 -6 210 27 2 960 516 32 0 0 chr5 49190569 49190631 -103346628 + (TAA)n Simple_repeat Simple_repeat 2 63 0 2 960 287 262 37 24 chr5 49191483 49191647 -103345612 + (CAGA)n Simple_repeat Simple_repeat 3 168 0 2 960 245 324 52 23 chr5 49192330 49192454 -103344805 - MIR SINE MIR -66 142 16 2 960 213 119 0 0 chr5 49193914 49193956 -103343303 + (T)n Simple_repeat Simple_repeat 1 42 0 2 960 248 149 0 0 chr5 49195151 49195198 -103342061 + (TAAAAA)n Simple_repeat Simple_repeat 4 50 0 2 960 204 154 0 0 chr5 49195198 49195250 -103342009 + A-rich Low_complexity Low_complexity 1 52 0 2 960 486 0 0 0 chr5 49195425 49195479 -103341780 + (TC)n Simple_repeat Simple_repeat 2 55 0 2 960 216 143 0 0 chr5 49195491 49195533 -103341726 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 960 30 105 0 0 chr5 49195658 49195772 -103341487 + AT_rich Low_complexity Low_complexity 1 114 0 2 960 298 295 135 8 chr5 49199882 49200015 -103337244 - MIR SINE MIR -66 196 47 2 960 644 98 10 0 chr5 49200580 49200682 -103336577 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 2 960 391 278 60 17 chr5 49200695 49200812 -103336447 + MTEb LTR MaLR 245 366 -13 2 960 24 32 0 0 chr5 49201498 49201529 -103335730 + AT_rich Low_complexity Low_complexity 1 31 0 2 960 285 45 0 0 chr5 49201566 49201610 -103335649 + L1_Mus1 LINE L1 6524 6567 0 2 960 232 48 0 45 chr5 49202129 49202173 -103335086 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 960 2189 71 0 13 chr5 49203938 49204237 -103333022 - L1Md_F2 LINE L1 -12 6570 6276 2 960 236 270 0 31 chr5 49204270 49204335 -103332924 - PB1D10 SINE Alu -29 88 26 2 960 268 127 18 18 chr5 49204472 49204528 -103332731 + GA-rich Low_complexity Low_complexity 1 56 0 2 960 203 195 30 54 chr5 49204519 49204687 -103332572 + (CAGAGA)n Simple_repeat Simple_repeat 4 167 0 2 960 234 0 0 0 chr5 49204764 49204790 -103332469 + (A)n Simple_repeat Simple_repeat 1 26 0 2 960 1451 123 8 13 chr5 49204868 49205107 -103332152 + Lx LINE L1 6415 6652 -2 2 960 280 238 104 47 chr5 49205112 49205218 -103332041 + MLT1D LTR MaLR 391 502 -3 2 960 21 36 0 0 chr5 49205386 49205414 -103331845 + AT_rich Low_complexity Low_complexity 1 28 0 2 960 357 82 0 0 chr5 49205648 49205697 -103331562 + (TCC)n Simple_repeat Simple_repeat 3 51 0 2 960 4563 78 2 10 chr5 49205920 49206538 -103330721 + L1Md_F2 LINE L1 5969 6581 -1 2 960 441 81 0 0 chr5 49206803 49206865 -103330394 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 960 598 117 0 18 chr5 49206883 49206996 -103330263 + (TA)n Simple_repeat Simple_repeat 1 111 0 2 960 1245 300 30 3 chr5 49207605 49207943 -103329316 + MTEa LTR MaLR 1 347 -32 2 960 180 0 0 0 chr5 49208938 49208958 -103328301 + (T)n Simple_repeat Simple_repeat 1 20 0 2 960 1024 259 95 44 chr5 49209044 49209449 -103327810 - MTD LTR MaLR -15 404 1 2 960 3221 47 10 0 chr5 49210706 49211115 -103326144 - L1Md_A LINE L1 0 6582 6170 2 960 744 273 82 4 chr5 49212243 49212486 -103324773 + MLT1C LTR MaLR 10 271 -196 2 960 2173 180 15 0 chr5 49215200 49215605 -103321654 - Lx2B LINE L1 0 7000 6590 2 960 5234 179 5 1 chr5 49215605 49216565 -103320694 + L1_Mur2 LINE L1 4818 5781 -96 2 960 537 16 0 0 chr5 49216572 49216634 -103320625 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 960 254 186 28 14 chr5 49216635 49216706 -103320553 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 960 347 308 134 5 chr5 49216875 49217061 -103320198 - Charlie4 DNA MER1_type -1669 292 83 2 960 1511 41 10 0 chr5 49217472 49217666 -103319593 + L1Md_T LINE L1 6387 6582 0 2 960 601 224 60 60 chr5 49219261 49219446 -103317813 + Lx4B LINE L1 6865 7049 -9 2 960 1198 152 38 40 chr5 49219860 49220107 -103317152 + ORR1A2 LTR MaLR 1 284 -100 2 960 386 295 80 50 chr5 49220188 49220388 -103316871 + MLT2B5 LTR ERVL 310 515 -40 2 960 23 68 0 0 chr5 49221024 49221068 -103316191 + AT_rich Low_complexity Low_complexity 1 44 0 2 960 401 194 47 31 chr5 49221400 49221528 -103315731 - Lx9 LINE L1 -4 7640 7511 2 960 1353 232 56 7 chr5 49221521 49221825 -103315434 + Lx9 LINE L1 6328 6646 -998 2 960 635 271 75 95 chr5 49221965 49222353 -103314906 + ORR1C2 LTR MaLR 1 380 -4 2 960 1273 178 13 0 chr5 49222412 49222648 -103314611 + ORR1A2 LTR MaLR 1 239 -88 2 960 207 0 0 0 chr5 49222682 49222705 -103314554 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 960 841 172 6 60 chr5 49223006 49223173 -103314086 - URR1A DNA MER1_type -10 216 59 2 960 3297 120 8 2 chr5 49225912 49226406 -103310853 - L1_Mus4 LINE L1 -5 6631 6135 2 960 6717 173 6 193 chr5 49226406 49226990 -103310269 + L1_Mus4 LINE L1 4125 4710 -1167 2 960 994 85 50 0 chr5 49226990 49227131 -103310128 + L1_Mus1 LINE L1 6416 6563 -4 2 960 6717 173 6 193 chr5 49227131 49227204 -103310055 + L1_Mus4 LINE L1 4711 4774 -1103 2 960 4676 54 2 2 chr5 49227204 49227793 -103309466 + L1Md_F2 LINE L1 5992 6580 -2 2 960 6717 173 6 193 chr5 49227793 49228623 -103308636 + L1_Mus4 LINE L1 4775 5269 -608 2 960 5012 70 1 3 chr5 49228623 49229284 -103307975 + L1Md_F2 LINE L1 5920 6579 -3 2 960 6717 173 6 193 chr5 49229284 49229359 -103307900 + L1_Mus4 LINE L1 5270 5286 -591 2 960 1002 94 0 21 chr5 49229359 49229500 -103307759 + B1_Mus1 SINE Alu 1 138 -10 3 960 482 0 17 0 chr5 49229500 49229558 -103307701 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 3 960 6717 127 51 83 chr5 49229558 49230339 -103306920 + L1_Mus4 LINE L1 5287 6107 -529 2 960 5994 134 12 21 chr5 49230339 49231305 -103305954 + RMER17B LTR ERVK 1 958 0 3 960 3112 100 78 16 chr5 49231305 49231317 -103305942 + L1_Mus4 LINE L1 6108 6117 -519 2 960 257 198 81 58 chr5 49232265 49232351 -103304908 + MIRc SINE MIR 105 192 -76 3 960 344 329 64 31 chr5 49233139 49233465 -103303794 + L1MB5 LINE L1 5743 6079 -95 3 960 228 293 40 13 chr5 49234975 49235051 -103302208 + ID2 SINE ID 4 81 -2 3 960 240 295 57 82 chr5 49235133 49235255 -103302004 - Charlie24 DNA MER1_type -1267 1183 1065 3 960 22 56 0 0 chr5 49236017 49236053 -103301206 + AT_rich Low_complexity Low_complexity 1 36 0 3 960 31 0 0 0 chr5 49236628 49236659 -103300600 + AT_rich Low_complexity Low_complexity 1 31 0 3 960 1026 304 22 32 chr5 49238242 49238653 -103298606 + Lx8 LINE L1 7003 7409 -64 3 960 236 270 68 29 chr5 49238646 49238736 -103298523 + Lx9 LINE L1 7370 7464 -180 3 960 189 0 0 0 chr5 49238736 49238757 -103298502 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 960 236 270 68 29 chr5 49238757 49238769 -103298490 + Lx9 LINE L1 7465 7476 -168 3 960 34 55 0 0 chr5 49238813 49238868 -103298391 + AT_rich Low_complexity Low_complexity 1 55 0 3 960 3049 25 6 0 chr5 49238923 49239288 -103297971 + L1Md_F2 LINE L1 6214 6580 -2 3 960 351 0 0 0 chr5 49239474 49239513 -103297746 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 960 614 248 122 14 chr5 49239639 49239852 -103297407 + Lx2B LINE L1 6761 6996 -4 3 960 248 333 13 0 chr5 49240850 49240928 -103296331 + ID4 SINE ID 5 83 0 3 960 280 293 235 11 chr5 49240939 49241122 -103296137 - Tigger5 DNA MER2_type -2083 323 100 3 960 297 381 79 52 chr5 49241290 49241694 -103295565 + L2c LINE L2 2509 2923 -496 3 960 238 266 77 68 chr5 49241751 49241868 -103295391 - RMER15 LTR ERVL -92 483 366 3 960 378 256 119 8 chr5 49242006 49242124 -103295135 - RMER15 LTR ERVL -444 131 1 3 960 214 324 26 77 chr5 49242819 49242936 -103294323 + L2c LINE L2 3222 3332 -55 3 960 766 285 48 94 chr5 49243014 49243409 -103293850 - MTE2a LTR MaLR -2 377 1 3 960 23 54 0 0 chr5 49243438 49243475 -103293784 + AT_rich Low_complexity Low_complexity 1 37 0 3 960 473 111 0 22 chr5 49244735 49244827 -103292432 + (CAGGG)n Simple_repeat Simple_repeat 2 91 0 3 960 1059 71 0 0 chr5 49244827 49244968 -103292291 + (GGAGA)n Simple_repeat Simple_repeat 5 145 0 3 960 204 337 120 26 chr5 49246208 49246400 -103290859 + MIRb SINE MIR 50 259 -9 3 960 220 204 0 75 chr5 49247325 49247378 -103289881 - L2c LINE L2 -55 3332 3284 3 960 180 200 0 0 chr5 49247350 49247385 -103289874 - L2c LINE L2 -93 3333 3299 3 960 544 305 54 20 chr5 49248493 49248697 -103288562 - MTE2a LTR MaLR 0 379 169 3 960 24 32 0 0 chr5 49248792 49248823 -103288436 + AT_rich Low_complexity Low_complexity 1 31 0 3 960 1130 111 0 16 chr5 49250808 49250991 -103286268 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 960 468 0 0 0 chr5 49251544 49251596 -103285663 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 960 194 0 39 0 chr5 49252912 49252938 -103284321 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 960 240 233 0 0 chr5 49253755 49253798 -103283461 + MLT1B LTR MaLR 269 311 -79 3 960 1129 122 22 11 chr5 49254739 49254922 -103282337 - B2_Mm2 SINE B2 -9 186 2 3 960 337 316 101 115 chr5 49255854 49256279 -103280980 + HAL1 LINE L1 664 1082 -1425 3 960 305 288 58 64 chr5 49256329 49256659 -103280600 + HAL1 LINE L1 1158 1485 -1022 3 960 23 0 0 0 chr5 49257212 49257235 -103280024 + AT_rich Low_complexity Low_complexity 1 23 0 3 960 426 79 0 0 chr5 49257363 49257426 -103279833 + (A)n Simple_repeat Simple_repeat 1 63 0 3 960 420 336 22 14 chr5 49257743 49257882 -103279377 - B1F SINE Alu 0 149 10 3 960 393 0 35 17 chr5 49258036 49258094 -103279165 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 960 6939 191 28 14 chr5 49258119 49259508 -103277751 + MERVL_2A-int LTR ERVL 436 1844 -3917 3 960 5426 169 32 16 chr5 49259499 49259625 -103277634 + MERVL_2A-int LTR ERVL 2189 2313 -3448 3 960 1940 120 177 3 chr5 49259625 49259959 -103277300 - ORR1B1 LTR MaLR 0 394 3 3 960 5426 169 32 16 chr5 49259959 49260811 -103276448 + MERVL_2A-int LTR ERVL 2314 3182 -2579 3 960 2546 213 25 18 chr5 49260802 49260829 -103276430 + MERVL_2A-int LTR ERVL 4453 4479 -1282 3 960 2992 83 5 10 chr5 49260829 49261240 -103276019 - RLTR9E LTR ERVK 0 409 1 3 960 2546 213 25 18 chr5 49261240 49261724 -103275535 + MERVL_2A-int LTR ERVL 4480 4968 -793 3 960 369 156 0 0 chr5 49261725 49261789 -103275470 + L1_Mur3 LINE L1 5107 5170 -710 3 960 232 366 68 12 chr5 49262368 49262531 -103274728 - LTR16A1 LTR ERVL -17 439 268 3 960 357 300 88 56 chr5 49262963 49263214 -103274045 - MamRep434 DNA TcMar -167 259 1 3 960 201 94 0 0 chr5 49264204 49264236 -103273023 + (TAA)n Simple_repeat Simple_repeat 3 34 0 3 960 441 0 0 0 chr5 49264413 49264462 -103272797 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 960 5056 67 5 5 chr5 49264917 49265574 -103271685 + L1Md_F2 LINE L1 5902 6558 -24 3 960 342 61 0 0 chr5 49265574 49265623 -103271636 + (TAA)n Simple_repeat Simple_repeat 3 51 0 3 960 362 323 30 0 chr5 49268539 49268638 -103268621 - PB1D10 SINE Alu -6 111 10 3 960 278 337 11 21 chr5 49268559 49268653 -103268606 - ID_B1 SINE B4 -54 170 78 3 960 878 319 81 31 chr5 49268686 49269045 -103268214 + MTE2b LTR MaLR 3 379 0 3 960 189 325 146 67 chr5 49269500 49269816 -103267443 + L2 LINE L2 1318 1658 -1761 3 960 237 306 53 53 chr5 49271535 49271611 -103265648 + MIR SINE MIR 85 163 -105 3 960 443 298 40 0 chr5 49273033 49273157 -103264102 + B3 SINE B2 2 130 -86 3 960 219 247 89 35 chr5 49273455 49273604 -103263655 - MIR SINE MIR -47 215 59 3 960 24 32 0 0 chr5 49273787 49273818 -103263441 + AT_rich Low_complexity Low_complexity 1 31 0 3 960 278 284 0 0 chr5 49273818 49273885 -103263374 - ID4 SINE ID -13 70 4 3 960 424 353 0 36 chr5 49273917 49274055 -103263204 - ID_B1 SINE B4 -25 199 67 3 960 212 309 11 56 chr5 49274556 49274645 -103262614 + MIR3 SINE MIR 105 189 -19 3 960 765 206 0 27 chr5 49276236 49276386 -103260873 + B1_Mur3 SINE Alu 3 148 -1 3 960 406 70 50 42 chr5 49276430 49276550 -103260709 + A-rich Low_complexity Low_complexity 3 123 0 3 960 862 251 20 15 chr5 49277114 49277312 -103259947 - B3 SINE B2 -6 210 12 3 960 248 93 23 23 chr5 49277887 49277931 -103259328 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 960 462 204 0 0 chr5 49277931 49278029 -103259230 + (TA)n Simple_repeat Simple_repeat 1 98 0 3 960 823 81 43 6 chr5 49280825 49280986 -103256273 + (GA)n Simple_repeat Simple_repeat 2 168 0 3 960 301 333 124 41 chr5 49281989 49282158 -103255101 + MIR SINE MIR 15 197 -65 3 960 258 305 109 57 chr5 49282877 49283048 -103254211 - MIRb SINE MIR -37 225 47 3 961 217 299 87 81 chr5 49283776 49283925 -103253334 + L2a LINE L2 3271 3420 -6 3 961 439 346 84 36 chr5 49285066 49285291 -103251968 + B4A SINE B4 57 292 0 3 961 6530 214 25 26 chr5 49285784 49287413 -103249846 + Lx5 LINE L1 5377 7014 -36 3 961 284 64 21 0 chr5 49287430 49287477 -103249782 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 3 961 234 150 0 0 chr5 49288633 49288673 -103248586 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 3 961 234 325 32 32 chr5 49288678 49288802 -103248457 - MIR SINE MIR -14 248 125 3 961 295 362 64 70 chr5 49288990 49289162 -103248097 + B4 SINE B4 102 272 -20 3 961 196 430 26 0 chr5 49289470 49289584 -103247675 - MER5A DNA MER1_type -10 179 63 3 961 2144 224 23 2 chr5 49289843 49290273 -103246986 - Lx5 LINE L1 -7 7043 6605 3 961 442 331 74 50 chr5 49291636 49291894 -103245365 - MLT1E LTR MaLR -331 322 59 3 961 5449 162 10 2 chr5 49292231 49293169 -103244090 + L1_Mm LINE L1 4852 5796 -87 3 961 20120 92 5 7 chr5 49293171 49296984 -103240275 + L1_Mus1 LINE L1 420 4224 -1659 3 961 7441 75 1 0 chr5 49296984 49298017 -103239242 + L1_Mus1 LINE L1 5532 6566 -1 3 961 183 80 0 0 chr5 49298021 49298046 -103239213 + (A)n Simple_repeat Simple_repeat 1 25 0 3 961 5426 116 30 11 chr5 49298057 49298902 -103238357 + Lx LINE L1 5783 6643 -11 3 961 236 373 9 26 chr5 49300386 49300499 -103236760 - PB1D10 SINE Alu 0 117 7 3 961 2272 63 0 7 chr5 49301763 49302051 -103235208 - L1Md_F2 LINE L1 -216 6366 6081 3 961 1354 60 11 0 chr5 49302051 49302234 -103235025 + L1Md_F2 LINE L1 6385 6569 -13 3 961 363 44 0 0 chr5 49304782 49304827 -103232432 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 961 477 0 0 0 chr5 49304827 49304879 -103232380 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 961 238 301 0 27 chr5 49305413 49305488 -103231771 + GA-rich Low_complexity Low_complexity 2 74 0 3 961 200 157 39 0 chr5 49305522 49305573 -103231686 + GA-rich Low_complexity Low_complexity 1 53 0 3 961 237 320 35 157 chr5 49305604 49305719 -103231540 + PB1 SINE Alu 25 125 -2 3 961 1223 114 109 0 chr5 49306552 49306754 -103230505 + L1_Mus1 LINE L1 6342 6565 -2 3 961 477 0 0 0 chr5 49306838 49306891 -103230368 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 961 527 346 20 56 chr5 49307462 49307765 -103229494 + B4A SINE B4 1 292 0 3 961 1088 199 65 0 chr5 49308294 49308525 -103228734 - Lx2B LINE L1 -890 6110 5865 3 961 3811 204 51 33 chr5 49308525 49308792 -103228467 + Lx2B LINE L1 6113 6383 -617 3 961 1662 31 0 0 chr5 49308792 49308985 -103228274 + B2_Mm1a SINE B2 1 193 0 3 961 3811 204 51 33 chr5 49308985 49309586 -103227673 + Lx2B LINE L1 6384 6996 -4 3 961 21 0 0 0 chr5 49309595 49309616 -103227643 + AT_rich Low_complexity Low_complexity 1 21 0 3 961 1057 250 27 97 chr5 49310220 49310623 -103226636 - MTE2a LTR MaLR -3 376 2 3 961 448 273 13 43 chr5 49311478 49311615 -103225644 - B1F SINE Alu -185 129 2 3 961 1371 61 0 0 chr5 49312149 49312329 -103224930 - L1_Mus2 LINE L1 0 6566 6387 3 961 3687 158 16 14 chr5 49312738 49313403 -103223856 - Lx2B LINE L1 -254 5623 4957 3 961 441 0 0 0 chr5 49313408 49313457 -103223802 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 961 441 0 0 0 chr5 49313457 49313505 -103223754 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 961 1883 236 61 5 chr5 49313510 49313953 -103223306 + Lx2B LINE L1 6533 7000 0 3 961 7979 47 6 2 chr5 49314526 49315919 -103221340 - L1Md_F2 LINE L1 0 6582 5186 3 961 471 18 0 0 chr5 49316051 49316107 -103221152 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 961 208 381 67 62 chr5 49316573 49316766 -103220493 + L2a LINE L2 2982 3175 -251 4 961 437 310 116 16 chr5 49316903 49317093 -103220166 + B4 SINE B4 35 243 -49 4 961 1010 129 0 0 chr5 49317103 49317250 -103220009 + B1_Mm SINE Alu 1 147 0 4 961 211 293 0 29 chr5 49317296 49317398 -103219861 + (CATA)n Simple_repeat Simple_repeat 4 102 0 4 961 28 29 0 0 chr5 49317466 49317501 -103219758 + AT_rich Low_complexity Low_complexity 1 35 0 4 961 36 40 0 0 chr5 49317733 49317783 -103219476 + AT_rich Low_complexity Low_complexity 1 50 0 4 961 5447 151 9 2 chr5 49318600 49319521 -103217738 + L1_Mm LINE L1 4870 5796 -87 4 961 3659 128 44 3 chr5 49319521 49320111 -103217148 + Lx LINE L1 6038 6651 -3 4 961 346 290 113 22 chr5 49320344 49320566 -103216693 - L1_Mus4 LINE L1 -24 6160 5919 4 961 21 89 0 0 chr5 49322399 49322455 -103214804 + AT_rich Low_complexity Low_complexity 1 56 0 4 961 324 338 92 34 chr5 49322482 49322721 -103214538 - L1M5 LINE L1 -519 5721 5469 4 961 641 82 27 71 chr5 49323628 49323811 -103213448 + CT-rich Low_complexity Low_complexity 1 175 0 4 961 621 0 0 0 chr5 49323817 49323886 -103213373 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 4 961 2488 83 3 24 chr5 49323891 49324262 -103212997 - L1_Mus3 LINE L1 -1 6637 6275 4 961 1028 63 0 7 chr5 49324268 49324416 -103212843 - L1_Mus4 LINE L1 -342 5841 5668 4 961 1285 59 6 0 chr5 49324416 49324586 -103212673 + L1_Mus1 LINE L1 6396 6566 -1 4 961 7548 106 65 30 chr5 49324855 49325662 -103211597 + Lx3A LINE L1 5294 6042 -939 4 961 180 0 0 0 chr5 49325662 49325682 -103211577 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 4 961 7548 130 30 93 chr5 49325682 49326629 -103210630 + Lx3A LINE L1 6043 6978 -3 4 961 651 48 0 0 chr5 49327087 49327170 -103210089 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 961 202 188 0 0 chr5 49327170 49327202 -103210057 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 961 348 24 0 0 chr5 49329452 49329493 -103207766 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 961 236 271 0 0 chr5 49329546 49329616 -103207643 + Lx9 LINE L1 7553 7622 -22 4 961 542 336 73 67 chr5 49329876 49330233 -103207026 - MTE2a LTR MaLR -2 377 19 4 961 23 0 0 0 chr5 49330355 49330378 -103206881 + AT_rich Low_complexity Low_complexity 1 23 0 4 961 371 372 83 0 chr5 49330486 49330666 -103206593 + MLT1C LTR MaLR 113 307 -160 4 961 808 82 16 0 chr5 49331777 49331899 -103205360 + (GA)n Simple_repeat Simple_repeat 1 124 0 4 961 530 347 43 68 chr5 49334612 49334819 -103202440 - B3A SINE B2 -11 205 4 4 961 340 344 31 8 chr5 49334845 49334974 -103202285 - B3 SINE B2 0 216 85 4 961 566 228 63 0 chr5 49335833 49335960 -103201299 + B1_Mur4 SINE Alu 5 139 -11 4 961 240 326 54 33 chr5 49338731 49338823 -103198436 + MLT2B1 LTR ERVL 372 465 -102 4 961 396 0 0 0 chr5 49339717 49339761 -103197498 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 961 6473 86 14 0 chr5 49340088 49340965 -103196294 - L1_Mus3 LINE L1 0 6638 5750 4 961 302 226 0 87 chr5 49341129 49341143 -103196116 + ID_B1 SINE B4 141 222 0 4 961 584 53 0 0 chr5 49341143 49341219 -103196040 + B1_Mm SINE Alu 72 147 0 4 961 189 0 0 0 chr5 49341221 49341242 -103196017 + (A)n Simple_repeat Simple_repeat 1 21 0 4 961 463 377 56 4 chr5 49341276 49341542 -103195717 + MLT1C LTR MaLR 171 450 -17 4 961 426 121 0 0 chr5 49341544 49341610 -103195649 + (CAA)n Simple_repeat Simple_repeat 1 66 0 4 961 278 247 0 0 chr5 49341691 49341780 -103195479 + T-rich Low_complexity Low_complexity 1 89 0 4 961 5056 117 13 18 chr5 49342246 49343024 -103194235 + L1_Mus4 LINE L1 5863 6636 0 4 961 381 200 76 22 chr5 49343560 49343652 -103193607 - Lx8 LINE L1 -123 7350 7254 4 961 522 293 16 80 chr5 49343658 49343907 -103193352 - Lx8 LINE L1 -351 7122 6890 4 961 242 136 49 0 chr5 49344104 49344185 -103193074 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 4 961 1907 319 40 24 chr5 49344191 49344865 -103192394 + Lx8 LINE L1 6197 6881 -592 4 961 21 57 0 0 chr5 49344959 49344994 -103192265 + AT_rich Low_complexity Low_complexity 1 35 0 4 961 9471 10 0 0 chr5 49345014 49346797 -103190462 - L1Md_T LINE L1 0 6582 4800 4 961 5938 82 0 9 chr5 49347738 49348545 -103188714 - L1Md_F2 LINE L1 -2 6580 5781 4 961 368 303 95 18 chr5 49348716 49348884 -103188375 + B3A SINE B2 2 182 -16 4 961 324 143 0 0 chr5 49348889 49348945 -103188314 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 961 1169 316 43 28 chr5 49348960 49349426 -103187833 + Lx8 LINE L1 6840 7312 -161 4 961 3963 49 6 2 chr5 49349610 49350097 -103187162 - L1Md_F2 LINE L1 -84 5799 5311 4 961 5384 69 69 3 chr5 49350097 49350825 -103186434 + L1Md_F2 LINE L1 5795 6570 -12 4 961 228 328 28 63 chr5 49351887 49352030 -103185229 + MIRc SINE MIR 30 167 -101 4 961 335 302 34 61 chr5 49352410 49352462 -103184797 - MIR SINE MIR -44 218 163 4 961 747 284 91 44 chr5 49352462 49352804 -103184455 + ORR1E LTR MaLR 2 359 0 4 961 335 302 34 61 chr5 49352804 49352899 -103184360 - MIR SINE MIR -100 162 75 4 961 245 118 0 19 chr5 49354486 49354538 -103182721 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 961 541 329 53 26 chr5 49354909 49355137 -103182122 + MLT1A1 LTR MaLR 175 408 0 4 961 1937 90 121 3 chr5 49356467 49356757 -103180502 + L1_Mus2 LINE L1 6243 6566 0 4 961 225 0 0 0 chr5 49357164 49357189 -103180070 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 961 219 188 0 0 chr5 49357576 49357624 -103179635 + (TCCA)n Simple_repeat Simple_repeat 3 50 0 4 961 187 403 0 16 chr5 49357690 49357753 -103179506 + MIRb SINE MIR 46 107 -161 4 961 228 309 24 12 chr5 49358101 49358183 -103179076 - MIR SINE MIR -66 196 114 4 961 413 311 92 0 chr5 49358192 49358356 -103178903 + Lx8 LINE L1 6786 6964 -509 4 961 183 229 0 0 chr5 49360031 49360066 -103177193 + MIR SINE MIR 225 259 -3 4 961 407 263 10 48 chr5 49360434 49360538 -103176721 + B3A SINE B2 8 107 -91 4 961 783 50 0 0 chr5 49360589 49360689 -103176570 + (CA)n Simple_repeat Simple_repeat 1 100 0 4 961 578 296 117 11 chr5 49361386 49361574 -103175685 + ID_B1 SINE B4 10 217 -7 4 961 388 332 51 26 chr5 49361658 49361853 -103175406 - B3 SINE B2 -16 200 1 4 961 183 292 76 50 chr5 49362336 49362455 -103174804 + MIR SINE MIR 19 140 -68 4 961 323 272 94 16 chr5 49362715 49362842 -103174417 + B1_Mur2 SINE Alu 12 148 -1 4 961 585 0 0 0 chr5 49363652 49363717 -103173542 + (TTTTG)n Simple_repeat Simple_repeat 5 69 0 4 961 2531 112 38 10 chr5 49364097 49364493 -103172766 - Lx3A LINE L1 0 6981 6575 4 961 246 128 0 0 chr5 49364683 49364722 -103172537 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 961 3474 64 9 0 chr5 49367677 49368127 -103169132 - L1_Mus3 LINE L1 -14 6624 6171 4 961 4244 80 5 2 chr5 49368150 49368723 -103168536 + L1_Mus3 LINE L1 5588 6162 -476 4 961 197 130 0 42 chr5 49369281 49369329 -103167930 + CT-rich Low_complexity Low_complexity 4 49 0 4 961 240 59 0 0 chr5 49370026 49370060 -103167199 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 961 213 357 14 0 chr5 49371383 49371453 -103165806 + ID4_ SINE ID 2 72 -11 4 961 300 318 88 63 chr5 49371539 49371744 -103165515 + MLT1B LTR MaLR 117 326 -64 4 961 274 360 71 53 chr5 49372332 49372614 -103164645 + L2b LINE L2 2916 3202 -173 4 961 252 218 25 83 chr5 49372659 49372779 -103164480 - Lx9 LINE L1 -25 7619 7507 4 961 332 312 52 21 chr5 49373700 49373893 -103163366 - L1MA4 LINE L1 -368 5932 5734 4 961 1736 223 43 36 chr5 49374461 49374879 -103162380 - MTC LTR MaLR 0 421 1 4 961 185 246 65 81 chr5 49375616 49375678 -103161581 - MIRm SINE MIR -4 272 212 4 961 588 317 89 73 chr5 49376028 49376355 -103160904 + RCHARR1 DNA MER1_type 8 339 -635 4 961 932 253 120 52 chr5 49376367 49376692 -103160567 + ORR1D2 LTR MaLR 20 366 -4 4 961 1440 279 84 28 chr5 49376696 49377301 -103159958 + RCHARR1 DNA MER1_type 335 973 -1 4 961 25 31 0 0 chr5 49377777 49377809 -103159450 + AT_rich Low_complexity Low_complexity 1 32 0 4 961 6263 129 23 20 chr5 49377810 49378862 -103158397 - Lx3B LINE L1 -3 6970 5916 4 961 235 301 43 17 chr5 49379249 49379364 -103157895 + Lx8 LINE L1 7356 7473 0 4 961 414 323 41 92 chr5 49379371 49379685 -103157574 + Lx8 LINE L1 7158 7455 -18 4 961 481 314 63 35 chr5 49379787 49380186 -103157073 + Lx9 LINE L1 7215 7624 -20 4 961 21 36 0 0 chr5 49380188 49380216 -103157043 + AT_rich Low_complexity Low_complexity 1 28 0 4 961 258 286 22 11 chr5 49380288 49380380 -103156879 + L1MA6 LINE L1 5906 5998 -302 4 961 184 186 129 48 chr5 49380461 49380523 -103156736 + MIRb SINE MIR 165 231 -37 4 961 252 0 0 0 chr5 49381451 49381479 -103155780 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 961 337 292 58 0 chr5 49381503 49381623 -103155636 - L1M5 LINE L1 -440 5739 5613 4 961 271 317 67 18 chr5 49381640 49381804 -103155455 - L1M5 LINE L1 -647 5537 5366 4 961 716 284 5 34 chr5 49382649 49382857 -103154402 + B3 SINE B2 2 203 -13 4 961 240 87 0 104 chr5 49384093 49384170 -103153089 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 4 961 450 0 0 0 chr5 49385340 49385390 -103151869 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 961 360 0 0 0 chr5 49385390 49385429 -103151830 + (GA)n Simple_repeat Simple_repeat 1 40 0 4 961 238 345 46 0 chr5 49385674 49385761 -103151498 - L2c LINE L2 -20 3367 3277 4 961 509 150 10 0 chr5 49386294 49386394 -103150865 + CT-rich Low_complexity Low_complexity 2 102 0 4 961 286 313 14 117 chr5 49386461 49386594 -103150665 - B1F SINE Alu -22 127 5 4 961 234 0 0 0 chr5 49387192 49387218 -103150041 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 961 357 24 0 0 chr5 49387401 49387443 -103149816 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 961 580 264 27 20 chr5 49387776 49387953 -103149306 + MLT1D LTR MaLR 353 624 0 5 961 1089 86 7 0 chr5 49388012 49388163 -103149096 - L1_Mus4 LINE L1 -272 6364 6213 5 961 746 73 12 175 chr5 49389765 49389931 -103147328 - L1_Mus2 LINE L1 0 6566 6428 5 961 443 269 171 50 chr5 49390253 49390492 -103146767 + MLT1K LTR MaLR 302 569 -26 5 961 2820 50 0 0 chr5 49390729 49391072 -103146187 + L1Md_F3 LINE L1 5244 5586 -297 5 961 8279 34 3 1 chr5 49391072 49392068 -103145191 + L1Md_F3 LINE L1 5587 6584 0 5 961 240 111 0 0 chr5 49392713 49392749 -103144510 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 961 523 102 0 22 chr5 49392749 49392839 -103144420 + (TA)n Simple_repeat Simple_repeat 1 88 0 5 961 27 29 0 0 chr5 49393737 49393771 -103143488 + AT_rich Low_complexity Low_complexity 1 34 0 5 961 378 333 31 10 chr5 49394696 49394793 -103142466 - RSINE1 SINE B4 -13 152 54 5 961 1885 72 0 0 chr5 49394851 49395086 -103142173 - L1Md_F2 LINE L1 -185 5698 5464 5 961 6723 69 11 10 chr5 49395086 49395980 -103141279 + L1Md_F2 LINE L1 5677 6571 -11 5 961 225 65 0 0 chr5 49396155 49396186 -103141073 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 961 446 381 54 43 chr5 49396977 49397254 -103140005 - MLT1A1 LTR MaLR -127 281 2 5 961 21 0 0 0 chr5 49397890 49397911 -103139348 + AT_rich Low_complexity Low_complexity 1 21 0 5 961 735 271 58 58 chr5 49398063 49398357 -103138902 + MER31A LTR ERV1 84 377 -108 5 961 261 0 0 0 chr5 49398357 49398386 -103138873 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 5 961 640 270 51 131 chr5 49398386 49398441 -103138818 + MER31A LTR ERV1 376 421 -45 5 961 1412 249 95 25 chr5 49398741 49399223 -103138036 + Charlie1a DNA MER1_type 380 895 -560 5 961 233 307 45 52 chr5 49399908 49400042 -103137217 - LTR37A LTR ERV1 -78 348 216 5 961 336 287 56 24 chr5 49400436 49400561 -103136698 - MTEa LTR MaLR 0 379 251 5 961 461 358 18 57 chr5 49400572 49400800 -103136459 - MTEa LTR MaLR -117 262 44 5 961 601 289 145 34 chr5 49401006 49401357 -103135902 - Lx8 LINE L1 -172 7301 6912 5 961 379 276 40 118 chr5 49401784 49402088 -103135171 + Charlie5 DNA MER1_type 2236 2515 -109 5 961 443 353 15 22 chr5 49402129 49402265 -103134994 - ID_B1 SINE B4 -11 213 79 5 961 563 229 11 11 chr5 49402863 49403028 -103134231 + ORR1A3 LTR MaLR 1 165 -164 5 961 8569 156 67 91 chr5 49403031 49403253 -103134006 + ORR1A3-int LTR MaLR 1 241 -1722 5 961 378 0 0 0 chr5 49403253 49403295 -103133964 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 961 8569 156 67 91 chr5 49403295 49405084 -103132175 + ORR1A3-int LTR MaLR 242 1963 0 5 961 1647 144 36 0 chr5 49405085 49405362 -103131897 + ORR1A3 LTR MaLR 2 288 -38 5 961 607 374 42 66 chr5 49405656 49406183 -103131076 + MLT1F1 LTR MaLR 1 514 -55 5 961 447 327 87 42 chr5 49407585 49408300 -103128959 - L1MA6 LINE L1 0 6300 5554 5 961 296 262 90 41 chr5 49408380 49408591 -103128668 - L1M4 LINE L1 -743 5431 5211 5 961 278 295 19 38 chr5 49409776 49409895 -103127364 + MLT1F1 LTR MaLR 486 602 -8 5 961 4235 65 5 14 chr5 49409973 49410547 -103126712 - L1Md_F2 LINE L1 -1 6581 6013 5 961 464 52 0 0 chr5 49410547 49410605 -103126654 + L1_Mm LINE L1 4495 4552 -1331 5 961 195 267 199 58 chr5 49411010 49411201 -103126058 - L2a LINE L2 -2 3424 3207 5 961 311 221 26 0 chr5 49411367 49411444 -103125815 + L1MB1 LINE L1 5417 5495 -676 5 961 407 373 18 24 chr5 49411446 49411611 -103125648 + RSINE1 SINE B4 2 165 0 5 961 189 0 0 0 chr5 49411623 49411644 -103125615 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 961 518 345 14 17 chr5 49411650 49412004 -103125255 + L1MB1 LINE L1 5477 5830 -359 5 961 340 196 26 43 chr5 49412164 49412281 -103124978 + RMER17B LTR ERVK 343 457 -501 5 961 204 45 43 43 chr5 49412397 49412444 -103124815 + (CAA)n Simple_repeat Simple_repeat 2 48 0 5 961 656 227 31 0 chr5 49412664 49412827 -103124432 - L1_Rod LINE L1 -1920 3927 3760 5 961 814 226 0 6 chr5 49413054 49413223 -103124036 + MTD LTR MaLR 244 411 -8 5 961 306 0 0 0 chr5 49413566 49413600 -103123659 + (GA)n Simple_repeat Simple_repeat 2 35 0 5 961 312 306 81 37 chr5 49413617 49413888 -103123371 + L1MB1 LINE L1 5883 6165 -3 5 962 2132 191 58 7 chr5 49415098 49415530 -103121729 + Lx4B LINE L1 6601 7054 -4 5 962 336 48 0 0 chr5 49415794 49415836 -103121423 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 962 22 35 0 0 chr5 49415967 49415996 -103121263 + AT_rich Low_complexity Low_complexity 1 29 0 5 962 183 80 0 0 chr5 49416863 49416888 -103120371 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 962 468 250 0 17 chr5 49417709 49417888 -103119371 + (TA)n Simple_repeat Simple_repeat 2 177 0 5 962 1985 215 45 68 chr5 49419108 49419411 -103117848 + RMER5 LTR ERV1 16 307 -227 5 962 1167 57 0 0 chr5 49419411 49419552 -103117707 - B1_Mus1 SINE Alu -6 142 2 5 962 1985 215 45 68 chr5 49419552 49419777 -103117482 + RMER5 LTR ERV1 308 532 -2 5 962 317 336 35 78 chr5 49420007 49420255 -103117004 + B4 SINE B4 56 276 -16 5 962 1530 213 43 21 chr5 49420357 49420731 -103116528 - ORR1C2 LTR MaLR -2 382 1 5 962 222 130 0 61 chr5 49421672 49421721 -103115538 + A-rich Low_complexity Low_complexity 3 48 0 5 962 3518 274 40 28 chr5 49421768 49422780 -103114479 - Lx7 LINE L1 -332 7364 6340 5 962 1764 239 31 36 chr5 49422808 49423453 -103113806 - Lx7 LINE L1 -1656 6040 5389 5 962 21 36 0 0 chr5 49423523 49423551 -103113708 + AT_rich Low_complexity Low_complexity 1 28 0 5 962 227 324 78 58 chr5 49424553 49424707 -103112552 + LTR50 LTR ERVL 419 575 -220 5 962 1896 251 60 30 chr5 49424722 49425389 -103111870 - L1MC1 LINE L1 -164 6169 5436 5 962 1060 124 6 6 chr5 49425971 49426150 -103111109 + (TTC)n Simple_repeat Simple_repeat 1 179 0 5 962 438 108 0 0 chr5 49426150 49426224 -103111035 + (TCC)n Simple_repeat Simple_repeat 3 76 0 5 962 292 326 15 94 chr5 49426261 49426464 -103110795 + Lx9 LINE L1 6974 7160 -484 5 962 224 327 71 18 chr5 49427351 49427463 -103109796 - MIR SINE MIR -142 120 3 5 962 28 29 0 0 chr5 49427568 49427603 -103109656 + AT_rich Low_complexity Low_complexity 1 35 0 5 962 229 29 0 28 chr5 49428656 49428692 -103108567 + B1_Mur4 SINE Alu 116 150 0 5 962 22 56 0 0 chr5 49428702 49428738 -103108521 + AT_rich Low_complexity Low_complexity 1 36 0 5 962 588 314 89 36 chr5 49428778 49429219 -103108040 - Lx7 LINE L1 -2 7471 6983 5 962 616 352 43 21 chr5 49430451 49430692 -103106567 + B4A SINE B4 3 254 -38 5 962 369 0 0 0 chr5 49430692 49430733 -103106526 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 962 180 0 0 0 chr5 49430735 49430755 -103106504 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 962 297 0 0 0 chr5 49430755 49430787 -103106472 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 962 616 352 43 21 chr5 49430787 49430820 -103106439 + B4A SINE B4 255 284 -8 5 962 218 169 0 15 chr5 49430859 49430925 -103106334 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 5 962 584 116 16 0 chr5 49431012 49431133 -103106126 + (TCTG)n Simple_repeat Simple_repeat 2 124 0 5 962 399 21 0 0 chr5 49431503 49431551 -103105708 + (CATTT)n Simple_repeat Simple_repeat 3 50 0 5 962 212 343 80 17 chr5 49431994 49432169 -103105090 + MIR SINE MIR 6 191 -71 5 962 226 277 0 0 chr5 49432192 49432239 -103105020 + PB1 SINE Alu 11 57 -70 5 962 238 254 59 15 chr5 49432294 49432362 -103104897 + ID4_ SINE ID 3 73 -10 5 962 781 274 5 24 chr5 49434074 49434280 -103102979 - B3 SINE B2 -7 209 8 5 962 21 71 0 0 chr5 49435285 49435327 -103101932 + AT_rich Low_complexity Low_complexity 1 42 0 5 962 1562 312 161 8 chr5 49435341 49436119 -103101140 + Lx8 LINE L1 6200 7096 -377 5 962 384 22 0 0 chr5 49436345 49436390 -103100869 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 962 219 170 0 0 chr5 49436501 49436548 -103100711 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 962 1754 180 8 48 chr5 49438018 49438392 -103098867 + RLTR15 LTR ERVK 1 359 0 5 962 228 370 33 50 chr5 49438454 49438636 -103098623 + MLT1L LTR MaLR 206 384 -226 5 962 279 157 0 0 chr5 49439058 49439109 -103098150 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 962 362 282 36 0 chr5 49440024 49440134 -103097125 - ID_B1 SINE B4 -6 218 105 5 962 392 390 38 24 chr5 49440546 49440919 -103096340 + MLT1L-int LTR MaLR 605 1024 -465 5 962 251 302 59 114 chr5 49441008 49441210 -103096049 + MLT1L-int LTR MaLR 1005 1195 -176 5 962 440 363 11 34 chr5 49441623 49441800 -103095459 - B3 SINE B2 -6 210 38 5 962 952 267 17 21 chr5 49441818 49442105 -103095154 - Lx6 LINE L1 -27 7433 7148 5 962 1567 178 14 14 chr5 49442113 49442410 -103094849 + L1_Mur3 LINE L1 4459 4755 -1125 5 962 1086 66 0 0 chr5 49443055 49443191 -103094068 + B1_Mus2 SINE Alu 2 137 -10 5 962 222 236 9 28 chr5 49443288 49443397 -103093862 + GA-rich Low_complexity Low_complexity 2 108 0 5 962 740 293 0 50 chr5 49443506 49443725 -103093534 - B3 SINE B2 -6 210 3 5 962 559 192 1 2 chr5 49445319 49445430 -103091829 + Lx3C LINE L1 6657 6752 -224 5 962 2767 194 47 52 chr5 49445429 49446147 -103091112 - L1_Mur3 LINE L1 -504 5376 4662 5 962 257 318 34 11 chr5 49446365 49446454 -103090805 - MER5A1 DNA MER1_type -68 98 8 5 962 541 15 0 0 chr5 49447702 49447770 -103089489 + L1Md_T LINE L1 6515 6582 0 5 962 244 219 25 50 chr5 49448717 49448837 -103088422 + (TATAA)n Simple_repeat Simple_repeat 1 117 0 5 962 259 251 127 72 chr5 49449791 49450122 -103087137 - L1M4 LINE L1 -3225 2921 2573 5 962 332 237 65 58 chr5 49451658 49451797 -103085462 + Tigger14a DNA MER2_type 15 154 -170 5 962 1440 202 44 10 chr5 49452263 49452558 -103084701 + Lx5 LINE L1 6746 7050 0 5 962 194 337 90 20 chr5 49452590 49452690 -103084569 + MIRc SINE MIR 84 190 -78 5 962 380 320 78 0 chr5 49452791 49452894 -103084365 - RSINE1 SINE B4 -53 112 2 5 962 934 50 0 8 chr5 49452935 49453057 -103084202 - MTB_Mm LTR MaLR -286 121 1 5 962 5382 185 97 10 chr5 49453062 49454212 -103083047 - MTB_Mm-int LTR MaLR -6 1252 3 5 962 2596 68 112 0 chr5 49454212 49454578 -103082681 - MTB_Mm LTR MaLR 0 407 1 5 962 268 164 81 14 chr5 49454578 49454652 -103082607 + Lx4B LINE L1 6915 6993 -65 5 962 291 224 47 0 chr5 49454652 49454737 -103082522 - MTA_Mm LTR MaLR -262 134 46 5 962 928 172 112 15 chr5 49456778 49456984 -103080275 - URR1A DNA MER1_type 0 226 1 5 962 234 194 13 130 chr5 49457457 49457492 -103079767 - ORR1D1 LTR MaLR -4 370 338 6 962 4041 58 44 0 chr5 49457492 49458010 -103079249 + L1Md_F2 LINE L1 6041 6581 -1 6 962 822 262 241 50 chr5 49458010 49458294 -103078965 - ORR1D1 LTR MaLR -37 337 1 6 962 210 306 13 65 chr5 49458304 49458381 -103078878 - MIR SINE MIR -77 191 119 6 962 3707 210 65 11 chr5 49458877 49459661 -103077598 + Lx5 LINE L1 6224 7049 -1 6 962 962 41 8 0 chr5 49459800 49459923 -103077336 + (TC)n Simple_repeat Simple_repeat 1 124 0 6 962 24 0 0 0 chr5 49460506 49460530 -103076729 + AT_rich Low_complexity Low_complexity 1 24 0 6 962 228 358 59 84 chr5 49461168 49461287 -103075972 - B1F1 SINE Alu -1 116 1 6 962 398 143 13 0 chr5 49461295 49461372 -103075887 + CT-rich Low_complexity Low_complexity 1 78 0 6 962 362 301 63 5 chr5 49461433 49461592 -103075667 + MLT1B LTR MaLR 195 388 -2 6 962 216 321 71 12 chr5 49462189 49462274 -103074985 - L3 LINE CR1 -880 3609 3520 6 962 257 264 22 22 chr5 49463067 49463156 -103074103 + CT-rich Low_complexity Low_complexity 4 92 0 6 962 959 316 83 10 chr5 49463271 49463670 -103073589 + Lx8 LINE L1 6935 7362 -111 6 962 21 0 0 0 chr5 49465002 49465023 -103072236 + GC_rich Low_complexity Low_complexity 1 21 0 6 962 2821 85 0 25 chr5 49465086 49465494 -103071765 - L1_Mus4 LINE L1 -4 6632 6235 6 962 393 382 58 40 chr5 49465578 49465856 -103071403 - B4A SINE B4 -6 286 4 6 962 12858 55 9 1 chr5 49466459 49468778 -103068481 - L1Md_F2 LINE L1 0 6582 4245 6 962 608 247 80 0 chr5 49470270 49470432 -103066827 + Lx5 LINE L1 6868 7042 -8 6 962 513 348 32 24 chr5 49470580 49470830 -103066429 - MTD LTR MaLR -167 252 1 6 962 180 333 54 62 chr5 49470871 49470983 -103066276 + L2b LINE L2 3215 3325 -50 6 962 30 69 0 0 chr5 49471185 49471243 -103066016 + AT_rich Low_complexity Low_complexity 1 58 0 6 962 221 217 0 32 chr5 49471243 49471305 -103065954 + CT-rich Low_complexity Low_complexity 3 62 0 6 962 1120 68 0 26 chr5 49471499 49471643 -103065616 + B1_Mm SINE Alu 1 141 -6 6 962 209 33 33 0 chr5 49471643 49471673 -103065586 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 962 1184 306 29 8 chr5 49472472 49472847 -103064412 + Lx8 LINE L1 6391 6773 -700 6 962 785 290 95 37 chr5 49472873 49473199 -103064060 + Lx8 LINE L1 6843 7187 -286 6 962 26 0 0 0 chr5 49474888 49474914 -103062345 + AT_rich Low_complexity Low_complexity 1 26 0 6 962 2030 167 8 8 chr5 49476378 49476752 -103060507 - L1_Mur2 LINE L1 -501 5376 5003 6 962 7257 105 13 8 chr5 49476782 49478043 -103059216 + L1_Mus4 LINE L1 5371 6636 0 6 962 411 344 52 73 chr5 49478606 49478838 -103058421 + B4 SINE B4 6 232 -60 6 962 2993 276 69 27 chr5 49479499 49480573 -103056686 + Lx9 LINE L1 6511 7629 -15 6 962 200 383 69 30 chr5 49480884 49481086 -103056173 + MIR SINE MIR 37 246 -16 6 962 288 0 0 0 chr5 49481792 49481824 -103055435 + (T)n Simple_repeat Simple_repeat 1 32 0 6 962 207 329 45 64 chr5 49483298 49483454 -103053805 - MIR SINE MIR 0 262 110 6 962 3688 42 2 0 chr5 49483836 49484284 -103052975 + L1Md_F3 LINE L1 6136 6584 0 6 962 294 125 0 0 chr5 49484335 49484383 -103052876 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 962 2865 32 0 3 chr5 49484478 49484823 -103052436 + L1Md_F3 LINE L1 6239 6582 -2 6 962 1038 104 0 0 chr5 49484885 49485020 -103052239 + B1_Mus1 SINE Alu 1 135 -13 6 962 234 0 0 0 chr5 49485022 49485048 -103052211 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 6 962 25 0 0 0 chr5 49485404 49485429 -103051830 + AT_rich Low_complexity Low_complexity 1 25 0 6 962 205 213 0 60 chr5 49485980 49486030 -103051229 + polypurine Low_complexity Low_complexity 1 47 0 6 962 746 262 35 78 chr5 49487432 49487653 -103049606 + RMER17C LTR ERVK 1 223 -187 6 962 204 40 0 0 chr5 49487653 49487678 -103049581 + (TCC)n Simple_repeat Simple_repeat 2 26 0 6 962 746 262 35 78 chr5 49487678 49487775 -103049484 + RMER17C LTR ERVK 224 305 -105 6 962 1471 298 105 85 chr5 49487840 49489071 -103048188 + RMER17C-int LTR ERVK 1 1255 -1983 6 962 4016 182 121 45 chr5 49489085 49490116 -103047143 + RMER17C-int LTR ERVK 1379 2488 -750 6 962 312 265 24 0 chr5 49490125 49490208 -103047051 + RMER17C LTR ERVK 292 376 -34 6 962 1126 82 0 0 chr5 49490259 49490406 -103046853 + B1_Mus1 SINE Alu 2 148 0 6 962 237 269 114 65 chr5 49492787 49492910 -103044349 + MLT1A1 LTR MaLR 268 396 -12 6 962 642 202 195 63 chr5 49493345 49493535 -103043724 + B3 SINE B2 2 216 0 6 962 536 341 42 9 chr5 49493684 49493897 -103043362 + Lx8 LINE L1 7127 7346 -127 6 962 195 188 0 0 chr5 49493958 49494006 -103043253 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 962 225 250 320 0 chr5 49495678 49495778 -103041481 + MLT1A0 LTR MaLR 21 152 -213 6 962 1386 251 2 128 chr5 49497025 49497492 -103039767 - MTD LTR MaLR -6 413 6 6 962 195 69 0 0 chr5 49498889 49498918 -103038341 + (A)n Simple_repeat Simple_repeat 1 29 0 6 962 231 390 25 25 chr5 49500088 49500209 -103037050 + L2a LINE L2 3298 3418 -8 1 962 235 330 102 76 chr5 49500320 49500438 -103036821 + B1F1 SINE Alu 29 149 0 2 962 38 39 0 0 chr5 49500438 49500490 -103036769 + AT_rich Low_complexity Low_complexity 1 52 0 3 962 1901 201 45 8 chr5 49501090 49501492 -103035767 + MTC LTR MaLR 3 419 -2 4 962 225 91 0 0 chr5 49501763 49501796 -103035463 - tRNA-Ser-AGY tRNA tRNA -51 34 2 5 962 223 217 14 28 chr5 49501816 49501887 -103035372 + (TGAA)n Simple_repeat Simple_repeat 4 73 0 6 962 282 288 16 154 chr5 49502745 49502931 -103034328 + B4 SINE B4 91 249 -43 7 962 411 21 0 0 chr5 49502955 49503003 -103034256 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 962 511 178 0 27 chr5 49503335 49503520 -103033739 + CT-rich Low_complexity Low_complexity 1 180 0 9 962 213 108 0 0 chr5 49503522 49503559 -103033700 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 962 402 21 0 0 chr5 49503560 49503607 -103033652 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 962 23 0 0 0 chr5 49504048 49504071 -103033188 + AT_rich Low_complexity Low_complexity 1 23 0 1 962 471 333 85 4 chr5 49504096 49504331 -103032928 + Lx8 LINE L1 7079 7332 -141 1 962 420 77 0 0 chr5 49505858 49505923 -103031336 + (T)n Simple_repeat Simple_repeat 1 65 0 1 962 1120 96 0 0 chr5 49505930 49506076 -103031183 - B1_Mus1 SINE Alu -2 146 1 1 962 21 0 0 0 chr5 49506343 49506364 -103030895 + AT_rich Low_complexity Low_complexity 1 21 0 1 962 233 328 0 0 chr5 49506625 49506692 -103030567 - ID4 SINE ID 0 83 17 1 962 213 333 43 11 chr5 49506720 49506814 -103030445 - L2 LINE L2 -2923 496 400 1 962 718 161 0 66 chr5 49506989 49507155 -103030104 - L1Md_F3 LINE L1 0 6584 6430 1 962 840 197 63 19 chr5 49507478 49507685 -103029574 + B3 SINE B2 1 216 0 2 962 508 259 34 8 chr5 49507974 49508091 -103029168 + B3A SINE B2 1 120 -78 2 962 623 61 50 20 chr5 49508112 49508212 -103029047 + RLTR31_Mm LTR ERVK 1 103 -458 2 962 756 86 0 0 chr5 49508200 49508305 -103028954 + B1_Mm SINE Alu 43 147 0 2 962 1719 222 18 61 chr5 49508320 49508793 -103028466 + RLTR31_Mm LTR ERVK 87 610 -82 2 962 3132 181 19 0 chr5 49508946 49509536 -103027723 - L1Md_F3 LINE L1 -1789 5671 5075 1 962 743 172 17 51 chr5 49509513 49509691 -103027568 - Lx3B LINE L1 -3 6970 6799 2 962 219 69 0 0 chr5 49509854 49509883 -103027376 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 962 516 313 83 68 chr5 49510679 49510943 -103026316 + B4 SINE B4 1 268 -24 2 962 303 122 0 0 chr5 49511027 49511076 -103026183 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 962 201 371 33 22 chr5 49511779 49511870 -103025389 - MIRb SINE MIR -161 107 16 2 962 216 330 45 27 chr5 49512599 49512711 -103024548 + MIR SINE MIR 45 158 -110 2 962 926 274 46 15 chr5 49514940 49515199 -103022060 + ORR1D2 LTR MaLR 2 268 -102 3 962 300 20 61 0 chr5 49515597 49515646 -103021613 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 3 962 1116 76 7 0 chr5 49515647 49515792 -103021467 - B1_Mm SINE Alu 0 147 2 3 962 262 265 69 30 chr5 49516717 49516818 -103020441 - MER103 DNA DNA -4 162 58 3 962 399 348 101 54 chr5 49517243 49517501 -103019758 - MER82 DNA MER2_type -2 651 382 3 962 263 294 87 0 chr5 49518157 49518283 -103018976 - Lx8 LINE L1 -1581 5892 5756 3 962 260 263 63 50 chr5 49518381 49518502 -103018757 + MTEb LTR MaLR 1 128 -237 3 962 287 255 40 20 chr5 49518718 49518818 -103018441 + MTEb LTR MaLR 272 373 -6 3 962 244 332 56 78 chr5 49518924 49519156 -103018103 + Arthur1 DNA Tip100 2741 2967 -980 3 962 759 323 94 29 chr5 49519187 49519538 -103017721 + Lx8 LINE L1 6955 7328 -145 3 962 236 30 30 0 chr5 49519538 49519571 -103017688 + (TATAA)n Simple_repeat Simple_repeat 1 34 0 3 962 626 199 96 0 chr5 49521064 49521200 -103016059 + B1_Mur4 SINE Alu 1 149 -1 4 962 264 283 83 48 chr5 49521076 49521204 -103016055 + B4A SINE B4 97 228 -64 4 962 1242 100 0 0 chr5 49521204 49521384 -103015875 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 962 264 283 83 48 chr5 49521384 49521400 -103015859 + B4A SINE B4 229 246 -46 4 962 584 195 23 0 chr5 49521413 49521587 -103015672 + GA-rich Low_complexity Low_complexity 2 179 0 4 962 2683 160 152 125 chr5 49521761 49522624 -103014635 - RMER17D LTR ERVK -3 886 1 4 962 300 42 125 0 chr5 49523257 49523305 -103013954 + U2 snRNA snRNA 1 54 -134 4 962 4553 117 45 8 chr5 49523567 49524272 -103012987 + Lx LINE L1 5912 6642 -12 4 962 352 331 48 32 chr5 49526468 49526593 -103010666 + RSINE1 SINE B4 9 135 -30 4 962 25 0 0 0 chr5 49526628 49526653 -103010606 + AT_rich Low_complexity Low_complexity 1 25 0 4 962 1116 77 0 0 chr5 49527845 49528014 -103009245 + (GA)n Simple_repeat Simple_repeat 1 169 0 4 962 684 139 24 4 chr5 49529579 49529720 -103007539 - Lx2 LINE L1 -110 6898 6759 5 962 1314 105 63 0 chr5 49529709 49529899 -103007360 - Lx2 LINE L1 -352 6645 6444 5 962 1004 42 0 47 chr5 49529936 49530084 -103007175 + L1_Mus2 LINE L1 6426 6566 0 5 962 21 57 0 0 chr5 49530716 49530751 -103006508 + AT_rich Low_complexity Low_complexity 1 35 0 5 962 987 64 0 0 chr5 49530994 49531134 -103006125 + (CA)n Simple_repeat Simple_repeat 1 140 0 5 962 22 56 0 0 chr5 49531173 49531209 -103006050 + AT_rich Low_complexity Low_complexity 1 36 0 5 962 1681 179 309 12 chr5 49531253 49531683 -103005576 - Lx2B LINE L1 0 7000 6443 5 962 381 288 166 0 chr5 49532964 49533103 -103004156 - RSINE1 SINE B4 0 165 4 5 962 438 53 0 0 chr5 49534009 49534066 -103003193 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 962 366 352 32 8 chr5 49534850 49534976 -103002283 + RSINE1 SINE B4 6 134 -31 5 962 519 121 0 0 chr5 49535637 49535736 -103001523 + (TC)n Simple_repeat Simple_repeat 2 100 0 5 962 384 77 0 0 chr5 49538039 49538091 -102999168 + (CAT)n Simple_repeat Simple_repeat 2 53 0 6 962 273 57 0 0 chr5 49538091 49538126 -102999133 + (CAA)n Simple_repeat Simple_repeat 3 37 0 6 962 525 146 0 186 chr5 49538426 49538596 -102998663 - Lx2 LINE L1 -6 6991 6868 6 962 700 56 11 0 chr5 49538594 49538684 -102998575 + Lx2B LINE L1 5797 5887 -1113 6 962 489 34 0 0 chr5 49539018 49539077 -102998182 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 962 204 318 23 12 chr5 49539747 49539833 -102997426 + MIRc SINE MIR 152 238 -30 6 962 570 265 101 21 chr5 49540464 49540653 -102996606 + Lx5 LINE L1 6793 6996 -54 6 962 213 180 0 0 chr5 49542455 49542505 -102994754 + A-rich Low_complexity Low_complexity 1 50 0 6 962 450 0 0 0 chr5 49542599 49542649 -102994610 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 962 235 356 11 0 chr5 49543104 49543194 -102994065 - Tigger5 DNA MER2_type -2283 123 33 6 962 14166 21 0 0 chr5 49543448 49545100 -102992159 + L1_Mm LINE L1 3498 5149 -734 7 120 240 329 78 26 chr5 49545100 49545253 -102992006 + Kanga1 DNA Tc2 1268 1428 -317 7 963 398 292 14 65 chr5 49545502 49545641 -102991618 - B1_Mur4 SINE Alu -8 142 11 7 963 2555 37 9 47 chr5 49545892 49546236 -102991023 + L1Md_F3 LINE L1 6240 6570 -14 7 963 225 0 0 0 chr5 49546309 49546334 -102990925 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 963 458 293 39 33 chr5 49546334 49546514 -102990745 - B3A SINE B2 -16 182 2 7 963 443 279 44 18 chr5 49546747 49546860 -102990399 + B3 SINE B2 6 121 -95 7 963 402 69 0 0 chr5 49548253 49548311 -102988948 + (GA)n Simple_repeat Simple_repeat 2 59 0 7 963 204 219 0 0 chr5 49550518 49550559 -102986700 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 7 963 366 42 0 0 chr5 49550614 49550662 -102986597 + (A)n Simple_repeat Simple_repeat 1 48 0 7 963 495 0 0 0 chr5 49551249 49551304 -102985955 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 963 546 246 14 86 chr5 49551953 49552193 -102985066 - ORR1D1 LTR MaLR -172 195 1 8 963 272 330 87 68 chr5 49552584 49552937 -102984322 + MLT1A0 LTR MaLR 4 396 -12 8 963 228 316 76 0 chr5 49553110 49553189 -102984070 + B4A SINE B4 186 270 -22 8 963 3156 193 12 31 chr5 49553732 49554233 -102983026 + RLTR20A2 LTR ERVK 1 492 -86 8 963 513 32 0 0 chr5 49554233 49554296 -102982963 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 963 3156 193 12 31 chr5 49554296 49554383 -102982876 + RLTR20A2 LTR ERVK 493 578 0 8 963 180 302 101 72 chr5 49555110 49555249 -102982010 + MIR SINE MIR 30 172 -90 8 963 251 306 35 62 chr5 49555705 49555963 -102981296 - L1MA6 LINE L1 -280 6020 5770 8 963 762 11 0 0 chr5 49556059 49556146 -102981113 + (TA)n Simple_repeat Simple_repeat 1 87 0 8 963 442 401 37 33 chr5 49556906 49557177 -102980082 - B4A SINE B4 -13 279 8 8 963 21 36 0 0 chr5 49558027 49558055 -102979204 + AT_rich Low_complexity Low_complexity 1 28 0 9 963 1734 85 19 19 chr5 49559844 49560109 -102977150 + L1_Mus3 LINE L1 6374 6638 0 9 963 27 29 0 0 chr5 49560160 49560194 -102977065 + AT_rich Low_complexity Low_complexity 1 34 0 9 963 437 307 53 0 chr5 49560516 49560630 -102976629 - PB1D7 SINE Alu 0 120 1 9 963 21 0 0 0 chr5 49560947 49560968 -102976291 + AT_rich Low_complexity Low_complexity 1 21 0 9 963 205 341 74 105 chr5 49561179 49561408 -102975851 - L2b LINE L2 -5 3370 3149 9 963 347 162 0 86 chr5 49561645 49561726 -102975533 - MTC LTR MaLR -1 418 345 9 963 1774 195 40 3 chr5 49561821 49562150 -102975109 - MTC LTR MaLR -80 341 1 9 963 323 316 11 0 chr5 49562713 49562808 -102974451 - MER45A DNA Tip100 -9 169 74 9 963 345 305 79 16 chr5 49563893 49564083 -102973176 + LTR37A LTR ERV1 225 426 0 9 963 361 360 31 31 chr5 49564177 49564372 -102972887 - RMER30 DNA MER1_type -3 199 5 9 963 243 0 0 0 chr5 49564535 49564562 -102972697 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 963 263 71 24 0 chr5 49564682 49564724 -102972535 + (TA)n Simple_repeat Simple_repeat 1 43 0 1 963 26 30 0 0 chr5 49564856 49564889 -102972370 + AT_rich Low_complexity Low_complexity 1 33 0 1 963 808 286 112 52 chr5 49565191 49565630 -102971629 - RMER13A LTR ERVK -394 466 2 1 963 597 160 0 0 chr5 49565823 49565929 -102971330 + T-rich Low_complexity Low_complexity 1 106 0 1 963 387 252 130 10 chr5 49566636 49566736 -102970523 - B3 SINE B2 -85 131 20 1 963 572 240 47 33 chr5 49567169 49567353 -102969906 - B3A SINE B2 -3 195 6 1 963 273 57 0 0 chr5 49567531 49567566 -102969693 + (TTG)n Simple_repeat Simple_repeat 1 35 0 1 963 183 390 0 0 chr5 49568850 49568932 -102968327 + L3 LINE CR1 4377 4458 -31 1 963 6300 65 25 6 chr5 49571058 49571902 -102965357 + L1Md_F2 LINE L1 5713 6559 -23 1 963 1188 315 14 8 chr5 49571912 49572270 -102964989 - Lx6 LINE L1 -155 7305 6946 1 963 4113 39 29 4 chr5 49572274 49572784 -102964475 - L1Md_F3 LINE L1 -17 6567 6045 1 963 502 261 42 6 chr5 49572855 49573021 -102964238 + L1MC1 LINE L1 5355 5526 -818 1 963 214 266 16 0 chr5 49573024 49573088 -102964171 + CT-rich Low_complexity Low_complexity 4 68 0 1 963 1099 284 114 14 chr5 49573161 49573811 -102963448 + L1MC1 LINE L1 5518 6245 -88 1 963 441 0 0 0 chr5 49574567 49574616 -102962643 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1 963 997 129 0 0 chr5 49574631 49574778 -102962481 - B1_Mus1 SINE Alu 0 148 2 1 963 1161 253 188 24 chr5 49575322 49575865 -102961394 + Lx8 LINE L1 6249 6880 -593 1 963 269 377 67 14 chr5 49576117 49576327 -102960932 - MIR SINE MIR -36 226 6 1 963 8495 29 0 0 chr5 49577158 49578224 -102959035 - L1Md_T LINE L1 -2 6580 5515 1 963 231 114 0 0 chr5 49578938 49578973 -102958286 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 963 44 20 0 0 chr5 49579023 49579074 -102958185 + AT_rich Low_complexity Low_complexity 1 51 0 1 963 531 297 35 40 chr5 49579484 49579684 -102957575 - MER58A DNA MER1_type -11 213 15 1 963 515 345 132 9 chr5 49580728 49580956 -102956303 + B4A SINE B4 2 257 -35 1 963 423 0 0 0 chr5 49580959 49581006 -102956253 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 963 456 19 0 0 chr5 49581006 49581058 -102956201 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 963 234 0 0 0 chr5 49581196 49581222 -102956037 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 1 963 613 295 28 28 chr5 49581840 49582053 -102955206 - RMER15 LTR ERVL -13 562 350 1 963 351 141 33 0 chr5 49582153 49582245 -102955014 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 1 963 634 350 84 35 chr5 49582456 49582743 -102954516 + MTEa LTR MaLR 7 307 -72 1 963 2418 92 48 71 chr5 49582744 49583165 -102954094 + IAPLTR2a LTR ERVK 1 411 0 1 963 3413 66 16 30 chr5 49583166 49583906 -102953353 + IAPEz-int LTR ERVK 9 662 -5819 1 963 951 59 0 0 chr5 49583906 49584025 -102953234 + IAPEz-int LTR ERVK 1359 1477 -5004 1 963 1780 111 8 4 chr5 49584020 49584273 -102952986 + IAPEz-int LTR ERVK 2244 2497 -5183 1 963 1015 63 0 0 chr5 49584270 49584396 -102952863 + IAPEz-int LTR ERVK 4785 4910 -2770 1 963 26267 16 3 0 chr5 49584396 49587345 -102949914 + IAPEz-int LTR ERVK 3525 6481 0 1 963 2408 95 48 71 chr5 49587345 49587766 -102949493 + IAPLTR2a LTR ERVK 1 411 0 1 963 295 300 0 0 chr5 49587766 49587836 -102949423 + MTEa LTR MaLR 303 372 -7 1 963 534 16 0 0 chr5 49589363 49589426 -102947833 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 963 390 291 6 22 chr5 49591151 49591330 -102945929 + Lx9 LINE L1 7339 7514 -130 1 963 574 203 14 0 chr5 49591332 49591475 -102945784 + (TA)n Simple_repeat Simple_repeat 1 145 0 1 963 583 103 10 10 chr5 49591863 49591961 -102945298 + (GA)n Simple_repeat Simple_repeat 1 98 0 1 963 2063 42 4 19 chr5 49593244 49593508 -102943751 - L1_Mus1 LINE L1 0 6567 6308 1 963 450 317 176 9 chr5 49594002 49594416 -102942843 - MLT1D LTR MaLR -1 504 33 1 963 299 311 84 36 chr5 49594440 49594607 -102942652 + MIR SINE MIR 17 191 -71 1 963 3302 182 22 5 chr5 49594610 49595201 -102942058 + RMER13A LTR ERVK 1 601 -259 1 963 548 273 79 7 chr5 49595191 49595331 -102941928 + RMER13A LTR ERVK 711 860 0 1 963 245 33 0 0 chr5 49595336 49595366 -102941893 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 963 531 144 27 0 chr5 49595366 49595477 -102941782 + (TA)n Simple_repeat Simple_repeat 1 114 0 1 963 494 321 165 43 chr5 49595744 49596230 -102941029 - MLT1D LTR MaLR -27 600 30 1 963 351 181 0 0 chr5 49596686 49596758 -102940501 + CT-rich Low_complexity Low_complexity 2 73 0 1 963 235 275 83 52 chr5 49596758 49596854 -102940405 + RMER4B LTR ERVK 458 556 -29 1 963 2711 177 40 2 chr5 49597321 49597820 -102939439 + Lx4A LINE L1 6527 7044 -14 1 963 354 45 0 0 chr5 49597820 49597864 -102939395 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 963 278 302 89 85 chr5 49597958 49598182 -102939077 - MIRb SINE MIR -21 247 23 1 963 333 282 89 47 chr5 49598675 49598865 -102938394 - MLT1B LTR MaLR -154 236 39 1 963 561 360 45 75 chr5 49600495 49600803 -102936456 + MLT1F LTR MaLR 28 390 -189 1 963 273 287 11 33 chr5 49600903 49600993 -102936266 + MTD LTR MaLR 7 94 -325 1 963 1024 266 95 20 chr5 49601100 49601395 -102935864 + MTD LTR MaLR 103 419 0 1 963 28 0 0 0 chr5 49601893 49601921 -102935338 + AT_rich Low_complexity Low_complexity 1 28 0 1 963 27 49 0 0 chr5 49602367 49602408 -102934851 + AT_rich Low_complexity Low_complexity 1 41 0 1 963 440 380 46 11 chr5 49602487 49602748 -102934511 + L2 LINE L2 2517 2786 -633 1 963 399 361 116 19 chr5 49603176 49603495 -102933764 - MLT1C LTR MaLR -6 461 112 1 963 26 0 0 0 chr5 49604141 49604167 -102933092 + AT_rich Low_complexity Low_complexity 1 26 0 1 963 1432 18 0 0 chr5 49605965 49606136 -102931123 - L1Md_A LINE L1 0 6582 6412 1 963 667 139 3 57 chr5 49606373 49606537 -102930722 + B1_Mus2 SINE Alu 5 149 0 1 963 189 0 0 0 chr5 49606972 49606993 -102930266 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 963 695 55 37 0 chr5 49606993 49607101 -102930158 + (GA)n Simple_repeat Simple_repeat 1 113 0 1 963 733 73 18 0 chr5 49607169 49607278 -102929981 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 1 963 519 281 7 7 chr5 49608527 49608674 -102928585 - B1_Mur1 SINE Alu 0 149 3 1 963 309 216 0 120 chr5 49608721 49608821 -102928438 - PB1 SINE Alu -2 125 38 1 963 4701 47 0 3 chr5 49608914 49609530 -102927729 + L1Md_T LINE L1 6007 6582 0 1 963 190 310 69 14 chr5 49611096 49611168 -102926091 + MIRm SINE MIR 96 171 -105 1 963 186 118 0 0 chr5 49611785 49611819 -102925440 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1 963 42 0 0 0 chr5 49611943 49611985 -102925274 + AT_rich Low_complexity Low_complexity 1 42 0 1 963 2378 184 5 2 chr5 49611986 49612400 -102924859 - Lx4A LINE L1 -3 7055 6641 1 963 1749 126 0 16 chr5 49612695 49612953 -102924306 - Lx3B LINE L1 -472 6501 6248 1 963 2667 143 6 41 chr5 49612953 49613419 -102923840 + Lx3C LINE L1 6518 6967 -9 1 963 272 59 0 0 chr5 49615611 49615645 -102921614 + U2 snRNA snRNA 1 34 -154 1 963 672 319 52 15 chr5 49615698 49615965 -102921294 - B4 SINE B4 -12 280 4 1 963 322 274 6 6 chr5 49617426 49617606 -102919653 + (CTA)n Simple_repeat Simple_repeat 1 180 0 1 963 312 331 33 33 chr5 49617620 49617770 -102919489 - RSINE1 SINE B4 -14 151 2 1 963 544 252 101 7 chr5 49617821 49617969 -102919290 - ID_B1 SINE B4 -58 166 5 1 963 184 358 58 19 chr5 49618156 49618310 -102918949 + L2c LINE L2 2962 3121 -266 1 963 29 0 0 0 chr5 49618797 49618826 -102918433 + AT_rich Low_complexity Low_complexity 1 29 0 1 963 5627 129 13 11 chr5 49619207 49620102 -102917157 - Lx2 LINE L1 -3 6994 6098 1 963 4500 101 41 5 chr5 49621536 49622196 -102915063 + Lx3_Mus LINE L1 6326 7009 0 1 963 472 262 143 0 chr5 49622377 49622545 -102914714 - Charlie1b DNA MER1_type -282 241 50 1 963 1263 270 38 25 chr5 49622627 49623022 -102914237 + Lx9 LINE L1 7066 7465 -179 1 963 339 25 0 0 chr5 49623025 49623065 -102914194 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 963 234 271 96 44 chr5 49624451 49624586 -102912673 - MIRb SINE MIR -68 200 59 1 963 30 45 0 0 chr5 49625493 49625537 -102911722 + AT_rich Low_complexity Low_complexity 1 44 0 1 963 2126 199 10 2 chr5 49626484 49626902 -102910357 + MTC LTR MaLR 1 421 0 1 963 25 83 0 0 chr5 49627077 49627137 -102910122 + AT_rich Low_complexity Low_complexity 1 60 0 1 963 406 270 0 0 chr5 49627197 49627271 -102909988 - B4A SINE B4 -216 76 3 1 963 593 325 44 53 chr5 49627271 49627631 -102909628 - ERVL-B4-int LTR ERVL -3869 1845 1489 1 963 5798 58 38 1 chr5 49627683 49628438 -102908821 - L1Md_F2 LINE L1 0 6582 5800 1 963 1870 221 39 10 chr5 49628781 49629170 -102908089 + MTD LTR MaLR 20 419 0 1 963 7414 101 20 6 chr5 49630493 49632262 -102904997 + L1_Mus3 LINE L1 4851 6635 -3 1 963 654 13 0 0 chr5 49632472 49632547 -102904712 + (TC)n Simple_repeat Simple_repeat 1 75 0 1 963 879 75 0 0 chr5 49633177 49633297 -102903962 + (TG)n Simple_repeat Simple_repeat 2 121 0 1 963 779 383 50 23 chr5 49633554 49633952 -102903307 - MLT1E3 LTR MaLR -2 622 214 1 963 193 386 17 17 chr5 49634660 49634776 -102902483 + MIR SINE MIR 7 122 -140 1 963 21 36 0 0 chr5 49634857 49634885 -102902374 + AT_rich Low_complexity Low_complexity 1 28 0 1 963 414 341 39 31 chr5 49636149 49636279 -102900980 + RSINE1 SINE B4 2 132 -33 1 963 657 36 0 0 chr5 49636286 49636370 -102900889 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 963 201 209 29 29 chr5 49636386 49636455 -102900804 + (TAAA)n Simple_repeat Simple_repeat 3 71 0 1 963 240 331 161 0 chr5 49636459 49636589 -102900670 + MIRb SINE MIR 25 179 -89 1 963 1131 67 0 0 chr5 49637165 49637314 -102899945 + (GGAGAA)n Simple_repeat Simple_repeat 3 151 0 1 963 621 355 50 0 chr5 49637707 49637969 -102899290 - B4 SINE B4 -15 277 3 2 963 839 313 76 0 chr5 49639221 49639483 -102897776 - MLT1C LTR MaLR -2 465 184 2 963 263 297 0 0 chr5 49639557 49639621 -102897638 - ID4_ SINE ID -19 64 1 2 963 463 132 0 0 chr5 49640442 49640525 -102896734 + L1_Mus2 LINE L1 6484 6566 0 2 963 814 320 65 53 chr5 49640559 49640971 -102896288 - MTD LTR MaLR 0 419 3 2 963 740 59 0 10 chr5 49641187 49641290 -102895969 + (TTCC)n Simple_repeat Simple_repeat 4 105 0 2 963 222 310 48 96 chr5 49641428 49641441 -102895818 + ID SINE ID 72 78 -146 2 963 339 300 47 55 chr5 49641441 49641568 -102895691 + B1F SINE Alu 2 127 -22 2 963 559 66 44 0 chr5 49641643 49641734 -102895525 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 2 963 195 146 0 0 chr5 49641738 49641779 -102895480 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 963 369 0 0 0 chr5 49641780 49641821 -102895438 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 963 254 270 69 10 chr5 49641923 49642024 -102895235 + ORR1E LTR MaLR 253 359 0 2 963 330 26 0 0 chr5 49642716 49642755 -102894504 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 963 1136 44 0 0 chr5 49642755 49642892 -102894367 - B1_Mm SINE Alu -10 137 1 2 963 29 78 0 0 chr5 49643000 49643064 -102894195 + AT_rich Low_complexity Low_complexity 1 64 0 2 963 4505 143 11 7 chr5 49643223 49643972 -102893287 + Lx3B LINE L1 5691 6426 -547 2 963 351 0 0 0 chr5 49644180 49644219 -102893040 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 963 303 85 0 0 chr5 49644659 49644706 -102892553 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 2 963 344 108 0 15 chr5 49645153 49645192 -102892067 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 963 183 129 0 0 chr5 49645192 49645223 -102892036 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 963 344 108 0 15 chr5 49645223 49645249 -102892010 + (TC)n Simple_repeat Simple_repeat 2 26 0 2 963 456 35 0 0 chr5 49645253 49645311 -102891948 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 963 288 0 0 0 chr5 49646587 49646619 -102890640 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 2 963 24 0 0 0 chr5 49647820 49647844 -102889415 + AT_rich Low_complexity Low_complexity 1 24 0 2 963 790 206 65 56 chr5 49648454 49648670 -102888589 + RMER1C Other Other 998 1215 -127 2 963 544 248 7 35 chr5 49648705 49648717 -102888542 + RMER1C Other Other 1203 1213 -129 2 963 201 74 0 0 chr5 49648717 49648744 -102888515 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 963 1060 79 0 0 chr5 49648744 49648883 -102888376 - B1_Mus1 SINE Alu -9 139 1 2 963 544 248 7 35 chr5 49648883 49649011 -102888248 + RMER1C Other Other 1214 1339 -3 2 963 24 32 0 0 chr5 49649479 49649510 -102887749 + AT_rich Low_complexity Low_complexity 1 31 0 2 963 432 269 9 9 chr5 49649712 49649817 -102887442 + MIR SINE MIR 6 110 -152 2 963 275 19 77 0 chr5 49652741 49652793 -102884466 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 2 963 1109 102 0 0 chr5 49652803 49652950 -102884309 - B1_Mm SINE Alu 0 147 1 2 963 570 274 16 0 chr5 49654685 49654809 -102882450 + RSINE1 SINE B4 4 129 -36 2 963 226 73 49 0 chr5 49654840 49654881 -102882378 + (CAAA)n Simple_repeat Simple_repeat 4 46 0 2 963 616 303 38 19 chr5 49654902 49655114 -102882145 + B3 SINE B2 1 216 0 2 963 350 362 183 46 chr5 49655541 49656006 -102881253 - MLT1F1 LTR MaLR -4 565 37 2 963 396 0 0 0 chr5 49656078 49656122 -102881137 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 963 2348 109 18 0 chr5 49656178 49656518 -102880741 - L1_Mus1 LINE L1 -384 6183 5838 2 963 2265 105 50 11 chr5 49656518 49656875 -102880384 + L1_Mus1 LINE L1 6197 6567 0 2 963 479 216 30 20 chr5 49657000 49657099 -102880160 + B3A SINE B2 1 100 -98 2 963 217 131 33 0 chr5 49657993 49658054 -102879205 + A-rich Low_complexity Low_complexity 5 67 0 2 963 24 32 0 0 chr5 49658536 49658567 -102878692 + AT_rich Low_complexity Low_complexity 1 31 0 2 963 651 325 51 42 chr5 49660579 49660890 -102876369 - MER58B DNA MER1_type -16 325 12 2 963 181 407 39 6 chr5 49660913 49661091 -102876168 + L2 LINE L2 2825 3008 -411 2 963 4321 89 8 2 chr5 49661092 49661691 -102875568 - L1_Mus4 LINE L1 -3 6633 6031 2 963 757 336 38 60 chr5 49661839 49662238 -102875021 + MLT1B LTR MaLR 1 390 0 2 963 196 100 0 48 chr5 49662303 49662345 -102874914 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 963 1157 113 11 6 chr5 49663064 49663242 -102874017 - B2_Mm1t SINE B2 -14 179 1 2 963 462 219 8 15 chr5 49663454 49663584 -102873675 - Lx9 LINE L1 -23 7621 7493 2 963 798 175 106 17 chr5 49663584 49663764 -102873495 + Lx7 LINE L1 7501 7696 0 2 963 344 228 32 11 chr5 49663773 49663866 -102873393 - Lx9 LINE L1 -182 7462 7368 2 963 595 313 15 49 chr5 49663885 49664090 -102873169 - B3A SINE B2 0 198 1 2 963 481 286 50 33 chr5 49664222 49664403 -102872856 + B3A SINE B2 15 198 0 2 963 450 242 20 0 chr5 49665038 49665137 -102872122 - Lx8 LINE L1 -452 7021 6921 2 963 2402 213 21 30 chr5 49666373 49666901 -102870358 + Lx4A LINE L1 6532 7047 -11 2 963 287 85 21 0 chr5 49666901 49666948 -102870311 + (TAA)n Simple_repeat Simple_repeat 1 48 0 2 963 420 317 66 8 chr5 49666969 49667090 -102870169 - ID_B1 SINE B4 -17 207 80 2 963 23 68 0 0 chr5 49667090 49667134 -102870125 + AT_rich Low_complexity Low_complexity 1 44 0 2 963 239 293 27 0 chr5 49667728 49667803 -102869456 + (TATG)n Simple_repeat Simple_repeat 2 78 0 2 963 416 370 70 70 chr5 49669540 49669810 -102867449 + B4 SINE B4 7 276 -16 2 963 480 111 0 0 chr5 49669882 49669954 -102867305 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 963 30 83 0 0 chr5 49669981 49670053 -102867206 + AT_rich Low_complexity Low_complexity 1 72 0 2 963 23 54 0 0 chr5 49672355 49672392 -102864867 + AT_rich Low_complexity Low_complexity 1 37 0 2 963 30 0 0 0 chr5 49674001 49674031 -102863228 + AT_rich Low_complexity Low_complexity 1 30 0 2 964 21 71 0 0 chr5 49678075 49678117 -102859142 + AT_rich Low_complexity Low_complexity 1 42 0 2 964 187 353 90 19 chr5 49678405 49678616 -102858643 - L2a LINE L2 -268 3158 2933 2 964 3688 67 12 10 chr5 49679021 49679517 -102857742 - L1Md_F2 LINE L1 -1 6581 6085 2 964 644 297 102 18 chr5 49679529 49680134 -102857125 - L1M3 LINE L1 -787 5525 4852 2 964 197 234 16 0 chr5 49680750 49680814 -102856445 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 964 288 314 57 0 chr5 49681228 49681333 -102855926 + B1F SINE Alu 8 118 -31 2 964 565 316 56 3 chr5 49681387 49681899 -102855360 + L1MD LINE L1 5038 5577 -665 2 964 984 178 160 4 chr5 49681920 49682157 -102855102 - Lx9 LINE L1 -37 7607 7334 2 964 180 0 0 0 chr5 49682984 49683004 -102854255 + (A)n Simple_repeat Simple_repeat 1 20 0 2 964 1657 148 100 7 chr5 49683725 49684025 -102853234 + ORR1A4 LTR MaLR 2 329 0 2 964 324 277 137 10 chr5 49686178 49686280 -102850979 + B4A SINE B4 139 253 -39 2 964 189 132 0 0 chr5 49687569 49687607 -102849652 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 964 288 0 0 0 chr5 49687609 49687641 -102849618 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 964 527 206 0 6 chr5 49688517 49688688 -102848571 + CT-rich Low_complexity Low_complexity 1 170 0 2 964 1783 231 22 12 chr5 49689169 49689580 -102847679 - MTD LTR MaLR -2 417 3 2 964 285 322 0 20 chr5 49690185 49690331 -102846928 + GA-rich Low_complexity Low_complexity 4 146 0 2 964 2239 58 0 7 chr5 49691242 49691536 -102845723 + L1Md_F2 LINE L1 6290 6581 -1 2 964 28 0 0 0 chr5 49691593 49691621 -102845638 + AT_rich Low_complexity Low_complexity 1 28 0 2 964 2029 132 47 21 chr5 49691693 49692073 -102845186 - Lx2B LINE L1 -1 6999 6610 2 964 717 299 24 0 chr5 49692081 49692288 -102844971 - B3 SINE B2 -4 212 1 2 964 207 0 0 0 chr5 49692403 49692426 -102844833 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 964 29 28 0 0 chr5 49693275 49693311 -102843948 + AT_rich Low_complexity Low_complexity 1 36 0 2 964 624 155 110 27 chr5 49693423 49693569 -102843690 + Lx2 LINE L1 6839 6996 -1 2 964 688 111 0 0 chr5 49694597 49694696 -102842563 - B1_Mus2 SINE Alu 0 147 49 2 964 3404 69 0 2 chr5 49695056 49695491 -102841768 - L1_Mus2 LINE L1 0 6566 6133 2 964 402 250 37 0 chr5 49698447 49698555 -102838704 + PB1D10 SINE Alu 1 112 -5 2 964 1580 32 0 11 chr5 49698563 49698752 -102838507 + B2_Mm1a SINE B2 2 188 -5 2 964 270 136 0 0 chr5 49698914 49698958 -102838301 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2 964 901 174 28 28 chr5 49698958 49699135 -102838124 - B2_Mm2 SINE B2 -18 177 1 2 964 3117 230 83 11 chr5 49702028 49703074 -102834185 + RMER1A Other Other 6 1062 -4 2 964 202 362 222 20 chr5 49703665 49704062 -102833197 + L2a LINE L2 2404 2880 -539 2 964 238 350 55 14 chr5 49704228 49704373 -102832886 + L2a LINE L2 3108 3258 -168 2 964 313 167 0 0 chr5 49704381 49704429 -102832830 + HAL1-3A_ME LINE L1 1976 2023 -835 2 964 195 132 0 0 chr5 49704714 49704727 -102832532 + (TA)n Simple_repeat Simple_repeat 1 13 0 2 964 276 30 0 0 chr5 49704727 49704760 -102832499 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 964 195 132 0 0 chr5 49704760 49704784 -102832475 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 964 285 128 0 0 chr5 49705146 49705193 -102832066 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 2 964 222 238 0 160 chr5 49705620 49705695 -102831564 - B1_Mur4 SINE Alu -10 140 78 2 964 531 0 0 0 chr5 49706322 49706381 -102830878 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 964 24 53 0 0 chr5 49707509 49707547 -102829712 + AT_rich Low_complexity Low_complexity 1 38 0 2 964 318 243 61 26 chr5 49708170 49708284 -102828975 + LTR41 LTR ERVL 649 766 -2 3 964 196 53 26 26 chr5 49708334 49708373 -102828886 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 3 964 672 53 10 10 chr5 49708373 49708469 -102828790 - B1_Mus2 SINE Alu 0 147 52 3 964 752 66 4 40 chr5 49708468 49708616 -102828643 - B1_Mus2 SINE Alu -18 131 2 3 964 243 0 0 0 chr5 49710289 49710316 -102826943 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 964 393 312 32 48 chr5 49710567 49710819 -102826440 + MER63D DNA AcHobo 46 293 -768 3 964 269 302 208 8 chr5 49711583 49711713 -102825546 - MIR3 SINE MIR -20 188 33 3 964 414 200 0 0 chr5 49712411 49712481 -102824778 - ID_B1 SINE B4 -8 216 147 3 964 32 67 0 0 chr5 49712649 49712709 -102824550 + AT_rich Low_complexity Low_complexity 1 60 0 3 964 669 58 0 0 chr5 49712850 49712936 -102824323 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 3 964 279 154 0 0 chr5 49712959 49713024 -102824235 + T-rich Low_complexity Low_complexity 1 65 0 3 964 1133 89 0 0 chr5 49713050 49713196 -102824063 - B1_Mus1 SINE Alu 0 148 3 3 964 458 347 42 0 chr5 49713198 49713437 -102823822 - L1M2 LINE L1 -513 5784 5536 3 964 453 258 54 13 chr5 49713466 49713651 -102823608 + L1M2 LINE L1 4730 4972 -1171 3 964 186 82 0 75 chr5 49713651 49713704 -102823555 + (TTAAA)n Simple_repeat Simple_repeat 1 49 0 3 964 23 0 0 0 chr5 49713704 49713727 -102823532 + AT_rich Low_complexity Low_complexity 1 23 0 3 964 315 330 53 11 chr5 49713727 49713917 -102823342 + L1_Mur3 LINE L1 4932 5129 -751 3 964 234 294 70 43 chr5 49713935 49714120 -102823139 + L1M2 LINE L1 5152 5341 -506 3 964 774 87 0 23 chr5 49714120 49714250 -102823009 + L1Md_F2 LINE L1 6453 6579 -3 3 964 292 175 0 5 chr5 49714265 49714332 -102822927 + Lx5 LINE L1 5350 5443 -713 3 964 659 325 79 7 chr5 49716698 49717001 -102820258 + MER2 DNA MER2_type 17 341 -4 3 964 278 289 17 34 chr5 49717177 49717295 -102819964 + CT-rich Low_complexity Low_complexity 3 118 0 3 964 2911 263 59 90 chr5 49717837 49718966 -102818293 + Lx5 LINE L1 5606 6699 -351 3 964 687 357 64 24 chr5 49719788 49720210 -102817049 - MLT1D LTR MaLR -2 503 65 3 964 364 38 0 0 chr5 49721590 49721643 -102815616 + Lx2 LINE L1 6943 6995 -2 3 964 458 206 63 31 chr5 49722112 49722303 -102814956 + RMER17C LTR ERVK 81 277 -133 3 964 382 341 57 61 chr5 49724517 49724745 -102812514 - RLTR25B LTR ERVK -801 227 1 3 964 180 103 0 0 chr5 49725810 49725828 -102811431 + (TA)n Simple_repeat Simple_repeat 2 19 0 3 964 261 0 0 0 chr5 49725828 49725857 -102811402 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 964 180 103 0 0 chr5 49725857 49725867 -102811392 + (TA)n Simple_repeat Simple_repeat 2 11 0 3 964 360 0 0 0 chr5 49726186 49726226 -102811033 + (A)n Simple_repeat Simple_repeat 1 40 0 3 964 930 285 36 108 chr5 49726401 49726708 -102810551 + B4A SINE B4 8 292 0 3 964 336 190 0 0 chr5 49726708 49726787 -102810472 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 964 5620 101 21 20 chr5 49726880 49727719 -102809540 + Lx3_Mus LINE L1 6162 7001 -8 3 964 387 0 0 0 chr5 49727917 49727960 -102809299 + (TATG)n Simple_repeat Simple_repeat 2 44 0 3 964 205 328 35 0 chr5 49729578 49729636 -102807623 - L2b LINE L2 -29 3346 3287 3 964 458 262 19 102 chr5 49729857 49730014 -102807245 + B4 SINE B4 4 147 -145 3 964 405 58 0 0 chr5 49730103 49730155 -102807104 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 964 420 331 8 8 chr5 49730495 49730617 -102806642 - RSINE1 SINE B4 -6 159 38 3 964 29 0 0 0 chr5 49731511 49731540 -102805719 + AT_rich Low_complexity Low_complexity 1 29 0 3 964 289 333 83 83 chr5 49731736 49732060 -102805199 + ORR1C2 LTR MaLR 23 346 -38 3 964 375 148 57 0 chr5 49732164 49732252 -102805007 + Lx2 LINE L1 6903 6995 -2 3 964 243 0 0 0 chr5 49732729 49732756 -102804503 + (A)n Simple_repeat Simple_repeat 1 27 0 3 964 231 367 137 65 chr5 49732810 49733131 -102804128 - L2a LINE L2 -6 3420 3077 3 964 309 26 0 0 chr5 49733864 49733902 -102803357 + (CTA)n Simple_repeat Simple_repeat 1 38 0 3 964 3065 61 5 10 chr5 49734536 49734934 -102802325 - MTA_Mm LTR MaLR 0 396 1 3 964 4613 142 15 16 chr5 49735146 49735899 -102801360 + L1VL4 LINE L1 1 752 -5550 3 964 754 289 135 13 chr5 49736615 49736927 -102800332 + ORR1E LTR MaLR 8 357 -2 3 964 1185 201 188 19 chr5 49737292 49737611 -102799648 + ORR1D1 LTR MaLR 1 373 -1 3 964 348 293 39 39 chr5 49737782 49737885 -102799374 + RSINE1 SINE B4 50 152 -13 3 964 28 0 0 0 chr5 49738002 49738030 -102799229 + AT_rich Low_complexity Low_complexity 1 28 0 3 964 759 307 70 40 chr5 49738299 49738869 -102798390 + L1M2 LINE L1 4373 4959 -1184 3 964 665 279 53 0 chr5 49738870 49739078 -102798181 - MER33 DNA MER1_type -96 228 10 3 964 225 132 0 0 chr5 49739435 49739473 -102797786 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3 964 24 0 0 0 chr5 49740238 49740262 -102796997 + AT_rich Low_complexity Low_complexity 1 24 0 3 964 555 16 0 0 chr5 49741291 49741355 -102795904 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 964 405 0 0 0 chr5 49741355 49741399 -102795860 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 964 225 0 0 0 chr5 49741883 49741908 -102795351 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 3 964 450 280 271 30 chr5 49742223 49742521 -102794738 + ORR1D2 LTR MaLR 1 370 0 3 964 221 360 0 67 chr5 49742637 49742771 -102794488 - MIR3 SINE MIR -69 139 15 3 964 1155 75 0 0 chr5 49742912 49743059 -102794200 + B1_Mus1 SINE Alu 1 147 -1 3 964 1093 92 17 6 chr5 49744367 49744541 -102792718 + L1_Mus3 LINE L1 6456 6631 -7 3 964 274 258 15 45 chr5 49744582 49744716 -102792543 + Lx9 LINE L1 7513 7642 -2 3 964 647 264 64 73 chr5 49745078 49745282 -102791977 + B3 SINE B2 1 202 -14 3 964 288 0 0 0 chr5 49745734 49745766 -102791493 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 964 2748 163 33 8 chr5 49745968 49746457 -102790802 + Lx LINE L1 5941 6441 -213 3 964 615 264 0 7 chr5 49746812 49746961 -102790298 - Lx9 LINE L1 -1100 6544 6397 3 964 537 16 0 0 chr5 49748543 49748605 -102788654 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 964 365 260 16 0 chr5 49749486 49749609 -102787650 + L1MA8 LINE L1 6154 6278 -13 3 964 252 386 0 0 chr5 49750345 49750459 -102786800 - MLT1C LTR MaLR -2 465 352 3 964 576 326 94 12 chr5 49750525 49750770 -102786489 - MLT1C LTR MaLR -202 265 1 3 964 736 303 137 38 chr5 49750770 49751523 -102785736 + L1MDa LINE L1 1938 2767 -3770 3 964 720 0 0 0 chr5 49751818 49751898 -102785361 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 3 964 1868 147 6 16 chr5 49751953 49752271 -102784988 + Lx2B LINE L1 6684 6998 -2 3 964 1009 258 73 41 chr5 49752373 49752621 -102784638 - MTD LTR MaLR -59 360 70 3 964 362 69 17 0 chr5 49752621 49752679 -102784580 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 3 964 1009 260 77 27 chr5 49752679 49752748 -102784511 - MTD LTR MaLR -350 69 2 3 964 603 298 77 18 chr5 49753572 49754016 -102783243 - L1MB7 LINE L1 -111 6067 5598 3 964 276 267 73 45 chr5 49754388 49754498 -102782761 - MIRb SINE MIR -73 195 83 3 964 339 25 0 0 chr5 49755257 49755297 -102781962 + (GGAGA)n Simple_repeat Simple_repeat 3 42 0 3 964 378 0 0 0 chr5 49756465 49756507 -102780752 + (T)n Simple_repeat Simple_repeat 1 42 0 3 964 253 274 118 36 chr5 49756775 49756885 -102780374 + RMER12 LTR ERVK 726 844 -478 3 964 441 296 59 54 chr5 49757014 49757200 -102780059 + B3A SINE B2 9 195 -3 3 964 394 309 36 0 chr5 49757670 49757809 -102779450 + B1F2 SINE Alu 3 146 -3 3 964 180 390 25 0 chr5 49757850 49757968 -102779291 + MIRb SINE MIR 81 201 -67 3 964 513 328 66 6 chr5 49759334 49759515 -102777744 + B4 SINE B4 85 276 -16 3 964 1746 176 39 34 chr5 49759793 49760151 -102777108 - RMER10B LTR ERVL 0 398 39 3 964 1163 174 31 22 chr5 49760785 49761008 -102776251 + URR1B DNA MER1_type 1 225 0 3 964 266 213 70 49 chr5 49761870 49762013 -102775246 - Lx9 LINE L1 -1 7643 7498 3 964 423 0 0 0 chr5 49764026 49764073 -102773186 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 964 471 335 56 84 chr5 49764103 49764390 -102772869 - B4A SINE B4 -12 280 2 3 964 503 360 29 24 chr5 49764429 49764637 -102772622 + Tigger5 DNA MER2_type 36 244 -2162 3 964 333 313 10 0 chr5 49764632 49764731 -102772528 + Tigger5 DNA MER2_type 2292 2391 -15 3 964 923 240 89 31 chr5 49765117 49765375 -102771884 + ORR1D2 LTR MaLR 2 274 -96 3 964 274 340 69 40 chr5 49766365 49766567 -102770692 - MIR SINE MIR -36 226 19 3 964 617 268 18 64 chr5 49767166 49767385 -102769874 + RLTR12B LTR ERVK 47 255 -273 3 964 380 325 16 8 chr5 49767609 49767733 -102769526 - ID_B1 SINE B4 -20 204 80 3 964 2152 170 38 29 chr5 49768815 49769232 -102768027 + MTC LTR MaLR 1 421 0 3 964 182 386 16 25 chr5 49770065 49770187 -102767072 - MIRc SINE MIR -136 132 12 3 964 28 29 0 0 chr5 49770217 49770252 -102767007 + AT_rich Low_complexity Low_complexity 1 35 0 3 964 487 308 38 15 chr5 49771509 49771641 -102765618 + RSINE1 SINE B4 2 136 -29 3 964 1622 159 86 3 chr5 49771829 49772131 -102765128 + ORR1A4 LTR MaLR 1 327 -2 3 964 455 97 21 61 chr5 49772436 49772537 -102764722 - B1_Mur4 SINE Alu -5 145 44 3 964 1195 319 125 0 chr5 49772548 49773118 -102764141 + Lx8 LINE L1 6827 7467 -6 3 964 694 307 89 60 chr5 49773901 49774432 -102762827 - MER90 LTR ERV1 -24 590 3 3 964 3155 64 2 5 chr5 49775769 49776175 -102761084 + L1Md_F2 LINE L1 6165 6569 -13 4 964 1839 242 34 53 chr5 49777148 49777611 -102759648 + RMER5 LTR ERV1 1 463 -71 4 964 1190 48 7 0 chr5 49777611 49777757 -102759502 - B1_Mus1 SINE Alu -1 147 1 4 964 1840 242 34 53 chr5 49777757 49777816 -102759443 + RMER5 LTR ERV1 464 513 -21 4 964 1015 180 36 13 chr5 49777820 49778045 -102759214 - Lx5 LINE L1 -914 6136 5907 4 964 1430 167 82 0 chr5 49778054 49778323 -102758936 + Lx5 LINE L1 6760 7050 0 4 964 356 227 184 10 chr5 49779570 49779668 -102757591 + MLT2B2 LTR ERVL 17 131 -389 4 964 278 241 122 37 chr5 49779673 49779755 -102757504 + Lx8 LINE L1 7016 7104 -369 4 964 241 303 15 0 chr5 49779870 49779936 -102757323 + Lx8 LINE L1 7268 7334 -139 4 964 408 366 30 89 chr5 49780071 49780308 -102756951 + MLT2B2 LTR ERVL 131 353 -162 4 964 281 371 35 7 chr5 49783451 49783595 -102753664 - MER3 DNA MER1_type -61 148 1 4 964 23 0 0 0 chr5 49783787 49783810 -102753449 + AT_rich Low_complexity Low_complexity 1 23 0 4 964 236 278 67 0 chr5 49784919 49785009 -102752250 + MER2 DNA MER2_type 81 176 -169 4 964 330 274 42 42 chr5 49785023 49785141 -102752118 + MER2 DNA MER2_type 223 340 -5 4 964 26 50 0 0 chr5 49786233 49786273 -102750986 + AT_rich Low_complexity Low_complexity 1 40 0 4 964 21503 62 1 0 chr5 49786709 49790199 -102747060 - L1Md_F2 LINE L1 -13 6569 3077 4 964 969 146 0 0 chr5 49791435 49791600 -102745659 + (TC)n Simple_repeat Simple_repeat 2 166 0 4 964 537 58 0 0 chr5 49791600 49791668 -102745591 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 4 964 258 337 92 109 chr5 49792189 49792602 -102744657 + MLT1H2 LTR MaLR 84 489 0 4 964 4402 97 28 32 chr5 49792785 49793497 -102743762 - Lx3_Mus LINE L1 -432 6577 5869 4 964 2551 104 52 3 chr5 49793494 49793881 -102743378 + Lx3_Mus LINE L1 6582 6987 -22 4 964 306 0 0 0 chr5 49793881 49793915 -102743344 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 4 964 1223 318 70 25 chr5 49793925 49794528 -102742731 + Lx9 LINE L1 6865 7494 -150 4 964 22 0 0 0 chr5 49795647 49795669 -102741590 + AT_rich Low_complexity Low_complexity 1 22 0 4 964 279 114 0 0 chr5 49795708 49795752 -102741507 + (T)n Simple_repeat Simple_repeat 1 44 0 4 964 363 342 25 17 chr5 49795907 49796026 -102741233 - B4A SINE B4 -169 123 4 4 964 476 277 88 17 chr5 49796176 49796496 -102740763 + L1M2 LINE L1 3606 3947 -2196 4 964 289 301 34 87 chr5 49796538 49796687 -102740572 + ORR1E LTR MaLR 51 191 -168 4 964 333 0 0 0 chr5 49797353 49797390 -102739869 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 4 964 220 242 29 29 chr5 49797571 49797639 -102739620 + CT-rich Low_complexity Low_complexity 2 69 0 4 964 803 269 49 31 chr5 49797973 49798261 -102738998 + Lx9 LINE L1 7101 7393 -251 4 964 435 92 0 0 chr5 49798320 49798385 -102738874 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 964 1219 54 0 0 chr5 49798406 49798553 -102738706 + B1_Mus2 SINE Alu 1 147 0 4 964 257 0 30 0 chr5 49798571 49798604 -102738655 + (CAA)n Simple_repeat Simple_repeat 3 36 0 4 964 724 312 142 21 chr5 49799606 49799979 -102737280 - MTD LTR MaLR -1 418 1 4 964 533 296 108 0 chr5 49800209 49800385 -102736874 - B3 SINE B2 -10 206 12 4 964 588 312 0 7 chr5 49801332 49801487 -102735772 + ID_B1 SINE B4 70 223 -1 4 964 264 59 0 0 chr5 49802378 49802412 -102734847 + (T)n Simple_repeat Simple_repeat 1 34 0 4 964 27 0 0 0 chr5 49803138 49803165 -102734094 + AT_rich Low_complexity Low_complexity 1 27 0 4 964 336 317 59 35 chr5 49803331 49803501 -102733758 - L3 LINE CR1 -42 4447 4274 4 964 620 335 7 0 chr5 49803885 49804037 -102733222 + RSINE1 SINE B4 11 163 -2 4 964 3201 51 5 0 chr5 49804548 49804942 -102732317 - MTA_Mm LTR MaLR 0 396 1 4 964 468 0 0 0 chr5 49805056 49805108 -102732151 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 964 925 275 36 29 chr5 49805146 49805532 -102731727 + L1M2 LINE L1 4898 5280 -606 4 964 21 0 0 0 chr5 49805932 49805953 -102731306 + AT_rich Low_complexity Low_complexity 1 21 0 4 964 4073 119 36 19 chr5 49806299 49806990 -102730269 - Lx2B LINE L1 -1090 5910 5205 4 120 6705 126 30 6 chr5 49806990 49808067 -102729192 + Lx3B LINE L1 5871 6973 0 4 965 581 316 46 34 chr5 49810481 49810720 -102726539 - MER2 DNA MER2_type -20 325 84 4 965 997 234 80 12 chr5 49811050 49811301 -102725958 - MER58B DNA MER1_type -5 336 69 4 965 253 346 0 0 chr5 49811306 49811387 -102725872 + B1F SINE Alu 7 87 -62 4 965 3172 83 35 0 chr5 49811398 49811833 -102725426 - L1_Mus2 LINE L1 -1 6565 6116 4 965 431 304 39 50 chr5 49812691 49812871 -102724388 + MIR SINE MIR 25 202 -60 4 965 205 211 0 0 chr5 49814198 49814236 -102723023 + T-rich Low_complexity Low_complexity 1 38 0 4 965 1080 80 0 0 chr5 49814848 49814985 -102722274 - B1_Mus2 SINE Alu -10 137 1 4 965 268 287 0 65 chr5 49816438 49816531 -102720728 + B1F SINE Alu 31 146 -3 4 965 428 203 0 0 chr5 49817078 49817152 -102720107 - B3A SINE B2 -124 74 1 4 965 232 333 11 0 chr5 49817206 49817293 -102719966 - MLT1F2 LTR MaLR -396 164 77 4 965 222 267 0 88 chr5 49817404 49817597 -102719662 + (CAGTG)n Simple_repeat Simple_repeat 4 179 0 4 965 1621 135 15 11 chr5 49817758 49818028 -102719231 + ORR1A3 LTR MaLR 5 275 -51 4 965 258 32 0 0 chr5 49818028 49818059 -102719200 + (A)n Simple_repeat Simple_repeat 1 31 0 4 965 2336 212 53 4 chr5 49820014 49820544 -102716715 + Lx9 LINE L1 7080 7635 -9 4 965 7905 56 0 13 chr5 49820764 49821810 -102715449 + L1_Mus2 LINE L1 5534 6566 0 4 965 4270 30 2 0 chr5 49822601 49823107 -102714152 - L1Md_A LINE L1 0 6582 6076 4 965 251 294 59 73 chr5 49823192 49823328 -102713931 + MIR SINE MIR 108 241 -21 4 965 210 191 0 0 chr5 49823353 49823395 -102713864 + (TTA)n Simple_repeat Simple_repeat 2 43 0 4 965 24 0 0 0 chr5 49823685 49823709 -102713550 + AT_rich Low_complexity Low_complexity 1 24 0 4 965 547 89 33 0 chr5 49824649 49824739 -102712520 + (GAAA)n Simple_repeat Simple_repeat 4 96 0 4 965 238 290 69 20 chr5 49825457 49825559 -102711700 - MLT1A0 LTR MaLR 0 365 259 4 965 414 0 0 0 chr5 49825580 49825626 -102711633 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 4 965 893 102 0 0 chr5 49825626 49825753 -102711506 - B1_Mm SINE Alu -13 134 8 4 965 478 230 27 48 chr5 49825753 49825772 -102711487 - ID_B1 SINE B4 -13 211 69 4 965 296 326 51 36 chr5 49825777 49825914 -102711345 - MLT1A0 LTR MaLR -151 214 76 4 965 244 286 32 0 chr5 49826106 49826169 -102711090 + MIRc SINE MIR 80 144 -124 4 965 255 390 22 17 chr5 49826399 49826482 -102710777 - Lx8 LINE L1 -176 7297 7217 4 965 603 0 0 0 chr5 49826482 49826549 -102710710 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 965 255 390 22 17 chr5 49826549 49826645 -102710614 - Lx8 LINE L1 -257 7216 7118 4 965 22 56 0 0 chr5 49826691 49826727 -102710532 + AT_rich Low_complexity Low_complexity 1 36 0 4 965 644 325 20 20 chr5 49828235 49828433 -102708826 - ID_B1 SINE B4 -1 223 26 4 965 260 240 28 103 chr5 49828442 49828576 -102708683 + Charlie8 DNA MER1_type 114 235 -2193 4 965 225 0 0 0 chr5 49829264 49829289 -102707970 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 965 432 0 0 0 chr5 49829293 49829341 -102707918 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 965 5095 55 0 5 chr5 49829419 49830065 -102707194 - L1Md_F3 LINE L1 -14 6570 5928 4 965 3501 51 8 0 chr5 49830065 49830603 -102706656 + L1Md_F3 LINE L1 5428 5968 -616 4 965 2535 76 52 14 chr5 49830613 49830959 -102706300 + RLTR10D LTR ERVK 1 359 0 4 965 371 345 41 34 chr5 49830989 49831136 -102706123 - B1F SINE Alu -1 148 1 4 965 22 88 0 0 chr5 49831920 49831977 -102705282 + AT_rich Low_complexity Low_complexity 1 57 0 4 965 342 200 0 0 chr5 49832997 49833057 -102704202 + Lx8 LINE L1 6578 6637 -836 4 965 512 331 96 58 chr5 49833538 49833903 -102703356 + MTEa LTR MaLR 1 379 0 4 965 2854 103 2 2 chr5 49834857 49835264 -102701995 - MTB_Mm LTR MaLR 0 407 1 4 965 1311 272 45 25 chr5 49835699 49836098 -102701161 + RMER1A Other Other 43 449 -581 4 965 1017 229 25 0 chr5 49836104 49836305 -102700954 + RMER1A Other Other 325 530 -500 4 965 210 291 0 25 chr5 49836656 49836737 -102700522 + CT-rich Low_complexity Low_complexity 2 80 0 4 965 24 0 0 0 chr5 49837770 49837794 -102699465 + AT_rich Low_complexity Low_complexity 1 24 0 4 965 941 265 188 0 chr5 49839072 49839387 -102697872 - ORR1D1 LTR MaLR 0 370 1 4 965 444 277 46 94 chr5 49839387 49839722 -102697537 + RMER17D2 LTR ERVK 165 482 -327 4 965 396 0 0 0 chr5 49839722 49839766 -102697493 + (TTTC)n Simple_repeat Simple_repeat 4 47 0 4 965 217 48 23 45 chr5 49840620 49840664 -102696595 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 965 272 288 110 0 chr5 49841783 49841856 -102695403 - PB1D7 SINE Alu -13 107 27 4 965 21 0 0 0 chr5 49842008 49842029 -102695230 + AT_rich Low_complexity Low_complexity 1 21 0 4 965 267 152 0 0 chr5 49842076 49842122 -102695137 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 965 346 91 0 0 chr5 49842123 49842167 -102695092 - HAL1-3A_ME LINE L1 -846 2012 1969 4 965 304 273 81 0 chr5 49842403 49842502 -102694757 - PB1D10 SINE Alu -9 108 2 4 965 205 336 103 8 chr5 49842512 49842638 -102694621 - MIR SINE MIR -67 195 58 4 965 23 54 0 0 chr5 49845247 49845284 -102691975 + AT_rich Low_complexity Low_complexity 1 37 0 4 965 5370 43 0 0 chr5 49845535 49846179 -102691080 - L1Md_T LINE L1 0 6582 5939 4 965 645 252 70 6 chr5 49846274 49846430 -102690829 - B3 SINE B2 0 216 51 4 965 308 266 23 38 chr5 49846905 49847038 -102690221 - L1ME4a LINE L1 0 6124 5994 4 965 3353 11 0 5 chr5 49847153 49847539 -102689720 - L1Md_A LINE L1 0 6582 6199 4 965 547 279 23 0 chr5 49848013 49848142 -102689117 + RSINE1 SINE B4 34 165 0 5 965 232 250 0 0 chr5 49848142 49848190 -102689069 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 965 290 26 0 25 chr5 49850164 49850204 -102687055 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 5 965 194 356 46 37 chr5 49851504 49851612 -102685647 + L2a LINE L2 3317 3425 -1 5 965 210 122 49 0 chr5 49851710 49851751 -102685508 + (TATAA)n Simple_repeat Simple_repeat 2 44 0 5 965 1378 192 20 36 chr5 49852555 49852858 -102684401 - ORR1C2 LTR MaLR 0 384 87 5 965 366 85 0 0 chr5 49853053 49853112 -102684147 + (T)n Simple_repeat Simple_repeat 1 59 0 5 965 1063 70 42 0 chr5 49853112 49853254 -102684005 - B1_Mus1 SINE Alu 0 148 1 5 965 1256 55 38 16 chr5 49853260 49853444 -102683815 + L1_Mus1 LINE L1 6380 6567 0 5 965 472 283 79 62 chr5 49853505 49853682 -102683577 - B3A SINE B2 -18 180 1 5 965 237 382 46 0 chr5 49854300 49854431 -102682828 - MLT1A1 LTR MaLR -259 149 13 5 965 824 292 68 58 chr5 49854890 49855306 -102681953 + BGLII_B LTR ERVK 1 414 -27 5 965 247 314 54 39 chr5 49855418 49855547 -102681712 - MIRc SINE MIR -60 208 78 5 965 207 372 69 29 chr5 49856280 49856522 -102680737 - L2c LINE L2 -182 3205 2946 5 965 609 233 13 52 chr5 49856695 49856849 -102680410 + RSINE1 SINE B4 1 148 -17 5 965 812 336 18 17 chr5 49856878 49857162 -102680097 + Tigger7 DNA MER2_type 105 408 -2083 5 965 308 263 13 13 chr5 49857806 49857883 -102679376 + B4 SINE B4 2 78 -214 5 965 354 294 0 11 chr5 49858348 49858441 -102678818 + BC1_Mm scRNA scRNA 6 97 -55 5 965 279 54 0 0 chr5 49859408 49859445 -102677814 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 965 3733 90 50 16 chr5 49859454 49859999 -102677260 - L1_Mus4 LINE L1 -1 6635 6073 5 965 561 254 42 7 chr5 49860057 49860200 -102677059 - MTD LTR MaLR 0 419 272 5 965 272 119 17 0 chr5 49860369 49860428 -102676831 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 5 965 545 86 0 24 chr5 49860428 49860511 -102676748 - B1_Mur4 SINE Alu -1 149 69 5 965 2025 300 70 29 chr5 49860523 49861366 -102675893 - Lx7 LINE L1 -284 7412 6535 5 965 241 381 0 23 chr5 49861377 49861463 -102675796 - MTD LTR MaLR -219 200 117 5 965 372 257 0 28 chr5 49861526 49861634 -102675625 - MTD LTR MaLR -314 105 1 5 965 368 348 150 14 chr5 49862133 49862346 -102674913 + MIR SINE MIR 3 244 -18 5 965 447 268 23 104 chr5 49862591 49862812 -102674447 + RLTR42-int LTR ERVK 1189 1391 -4131 5 965 4488 88 2 0 chr5 49862861 49863478 -102673781 - L1_Mus2 LINE L1 -310 5573 4956 5 965 7668 62 7 2 chr5 49863484 49864512 -102672747 + L1_Mus2 LINE L1 5587 6566 0 5 965 547 232 207 20 chr5 49866853 49867051 -102670208 + Lx6 LINE L1 7216 7450 -10 5 965 325 356 75 33 chr5 49867719 49867960 -102669299 - L1M5 LINE L1 -294 5830 5580 5 965 388 196 10 0 chr5 49868016 49868113 -102669146 + Lx3A LINE L1 6876 6973 -8 5 965 302 289 96 32 chr5 49868190 49868315 -102668944 - MER97c DNA MER1_type? -891 199 67 5 965 342 352 31 39 chr5 49868742 49868872 -102668387 + B1F SINE Alu 1 129 -20 5 965 1975 47 0 0 chr5 49868956 49869191 -102668068 + L1Md_F2 LINE L1 5352 5586 -297 5 965 7618 50 27 5 chr5 49869191 49870156 -102667103 + L1Md_F2 LINE L1 5587 6572 -10 5 965 1714 148 7 0 chr5 49870185 49870468 -102666791 + Lx2 LINE L1 6701 6985 -12 5 965 856 296 161 10 chr5 49871123 49871433 -102665826 - MTD LTR MaLR -14 405 49 5 965 624 27 0 0 chr5 49871665 49871739 -102665520 + (TG)n Simple_repeat Simple_repeat 1 74 0 5 965 459 0 0 0 chr5 49872091 49872142 -102665117 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 965 253 273 116 43 chr5 49875024 49875162 -102662097 + MLT1C LTR MaLR 275 422 -45 5 965 3812 53 52 6 chr5 49875991 49876486 -102660773 + L1Md_F2 LINE L1 6053 6570 -12 5 965 309 135 0 0 chr5 49876513 49876565 -102660694 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 965 195 240 0 0 chr5 49876952 49877002 -102660257 + L4 LINE RTE 189 238 -1791 5 965 237 333 28 0 chr5 49877355 49877463 -102659796 + L2b LINE L2 3073 3183 -192 5 965 788 187 192 0 chr5 49877671 49877858 -102659401 + URR1B DNA MER1_type 1 223 -2 5 965 205 343 94 40 chr5 49878361 49878659 -102658600 + L2b LINE L2 3108 3421 -5 5 965 346 161 0 0 chr5 49879704 49879760 -102657499 + B3A SINE B2 1 56 -142 5 965 2601 169 24 0 chr5 49880449 49880899 -102656360 + Lx4A LINE L1 6597 7057 -1 5 965 5533 75 17 11 chr5 49880906 49881657 -102655602 + L1_Mus3 LINE L1 5883 6638 0 5 965 317 263 201 44 chr5 49882026 49882185 -102655074 + MLT1A1 LTR MaLR 198 381 -27 5 965 462 36 0 0 chr5 49885302 49885358 -102651901 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 965 378 0 0 0 chr5 49885358 49885399 -102651860 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 965 505 0 71 0 chr5 49885710 49885780 -102651479 + (CAAAA)n Simple_repeat Simple_repeat 2 76 0 5 965 3254 145 0 6 chr5 49886179 49886705 -102650554 + Lx2 LINE L1 6470 6992 -5 5 965 468 0 0 0 chr5 49886705 49886757 -102650502 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 965 1258 195 84 8 chr5 49887598 49887861 -102649398 - Lx5 LINE L1 -78 6972 6690 5 965 382 340 138 61 chr5 49889321 49890205 -102647054 + L2 LINE L2 2119 3070 -349 5 965 375 309 22 110 chr5 49891901 49892083 -102645176 - B3 SINE B2 -48 168 3 5 965 9121 7 0 0 chr5 49892314 49893357 -102643902 - L1Md_A LINE L1 0 6582 5540 5 965 418 312 128 14 chr5 49893993 49894204 -102643055 - MLT1D LTR MaLR -43 462 228 5 965 315 333 39 8 chr5 49894824 49894954 -102642305 + MIRb SINE MIR 24 157 -111 5 965 281 286 0 14 chr5 49896175 49896246 -102641013 - ID4 SINE ID -2 81 12 5 965 4854 35 16 0 chr5 49896259 49896805 -102640454 - L1_Mus1 LINE L1 0 6567 6013 5 965 341 223 125 80 chr5 49896826 49896938 -102640321 + PB1D10 SINE Alu 1 117 0 5 965 224 315 159 52 chr5 49897487 49897852 -102639407 + L2 LINE L2 1953 2356 -1063 5 965 3196 289 35 93 chr5 49899882 49901296 -102635963 - Lx8 LINE L1 -9 7464 6133 5 965 303 181 0 0 chr5 49901481 49901553 -102635706 + A-rich Low_complexity Low_complexity 1 72 0 5 965 208 329 38 0 chr5 49905199 49905278 -102631981 + L2 LINE L2 2655 2736 -683 5 965 207 0 0 0 chr5 49907352 49907375 -102629884 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 965 1311 50 6 0 chr5 49908695 49908854 -102628405 - L1_Mus1 LINE L1 0 6567 6408 5 965 750 53 0 0 chr5 49912255 49912350 -102624909 + (TC)n Simple_repeat Simple_repeat 1 95 0 5 965 444 19 0 0 chr5 49912350 49912402 -102624857 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 965 22 56 0 0 chr5 49912781 49912817 -102624442 + AT_rich Low_complexity Low_complexity 1 36 0 5 965 209 151 0 19 chr5 49913129 49913183 -102624076 + CT-rich Low_complexity Low_complexity 2 54 0 5 965 308 103 17 0 chr5 49913657 49913715 -102623544 + (GA)n Simple_repeat Simple_repeat 1 59 0 5 965 201 74 0 0 chr5 49916066 49916093 -102621166 + (CGG)n Simple_repeat Simple_repeat 2 28 0 5 965 25 0 0 0 chr5 49916129 49916154 -102621105 + GC_rich Low_complexity Low_complexity 1 25 0 5 965 504 0 0 0 chr5 49916361 49916417 -102620842 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 965 211 339 23 30 chr5 49917882 49918013 -102619246 + MIR SINE MIR 118 247 -15 5 965 861 275 5 29 chr5 49918465 49918675 -102618584 - B3 SINE B2 -10 206 2 5 965 198 319 14 0 chr5 49918919 49918991 -102618268 - MIR SINE MIR -28 234 162 5 965 224 361 118 0 chr5 49919011 49919155 -102618104 + MIRc SINE MIR 101 261 -7 5 965 307 200 46 0 chr5 49919646 49919711 -102617548 - L1MC1 LINE L1 -6 6327 6260 5 965 411 254 7 69 chr5 49919867 49920011 -102617248 + MLT1B LTR MaLR 240 374 -16 5 965 332 249 0 0 chr5 49920555 49920644 -102616615 - MIRb SINE MIR -86 182 94 5 965 619 238 86 17 chr5 49921308 49921483 -102615776 + MTC LTR MaLR 2 188 -231 5 965 528 16 0 0 chr5 49921489 49921550 -102615709 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 965 489 152 425 7 chr5 49921576 49921715 -102615544 - RMER4B LTR ERVK 0 585 389 5 965 855 212 100 8 chr5 49921720 49921909 -102615350 + MTC LTR MaLR 219 409 -12 5 965 671 293 69 0 chr5 49921971 49922159 -102615100 + Lx8 LINE L1 7091 7291 -182 5 965 671 292 86 12 chr5 49922694 49923013 -102614246 + MTE2a LTR MaLR 6 379 0 5 965 1404 222 37 55 chr5 49923256 49923637 -102613622 + ORR1D1 LTR MaLR 1 374 0 5 965 500 230 120 13 chr5 49924008 49924158 -102613101 - MLT1H LTR MaLR -2 547 382 5 965 311 283 43 26 chr5 49924476 49924592 -102612667 + MLT1A0 LTR MaLR 12 129 -236 5 965 373 303 98 8 chr5 49924617 49924734 -102612525 + MLT1A0 LTR MaLR 200 327 -38 5 965 250 360 110 71 chr5 49924734 49924988 -102612271 + B4 SINE B4 2 265 -27 5 965 378 0 0 0 chr5 49925149 49925191 -102612068 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 965 252 0 0 0 chr5 49925191 49925218 -102612041 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 965 2785 104 27 0 chr5 49925979 49926355 -102610904 + Lx2 LINE L1 6612 6997 0 5 965 269 325 94 84 chr5 49927259 49927534 -102609725 + ORR1E LTR MaLR 75 352 -7 5 965 3082 208 247 6 chr5 49927738 49928431 -102608828 - RMER13A LTR ERVK 0 860 1 5 965 328 30 44 29 chr5 49929042 49929110 -102608149 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 5 965 38860 29 1 0 chr5 49929228 49936157 -102601102 - L1Md_T LINE L1 0 6585 1 5 965 313 293 12 0 chr5 49936210 49936292 -102600967 + MER2 DNA MER2_type 239 321 -24 5 965 192 152 0 0 chr5 49937692 49937725 -102599534 + A-rich Low_complexity Low_complexity 1 33 0 6 966 240 70 23 23 chr5 49939645 49939689 -102597570 - Lx8 LINE L1 -17 7456 7413 6 966 411 161 29 14 chr5 49940326 49940465 -102596794 + (TAGA)n Simple_repeat Simple_repeat 2 142 0 6 966 531 330 31 13 chr5 49940992 49941216 -102596043 - MLT1D LTR MaLR -20 485 258 6 966 390 139 0 0 chr5 49941846 49941932 -102595327 + (GA)n Simple_repeat Simple_repeat 1 86 0 6 966 841 283 133 4 chr5 49941951 49942199 -102595060 - B4A SINE B4 -12 280 1 6 966 408 40 0 0 chr5 49942965 49943015 -102594244 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 966 1129 203 16 8 chr5 49943024 49943308 -102593951 + L1Md_A LINE L1 217 728 -5996 6 966 216 0 0 0 chr5 49944747 49944771 -102592488 + (GA)n Simple_repeat Simple_repeat 2 25 0 6 966 209 244 0 0 chr5 49944926 49944967 -102592292 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 966 497 339 93 75 chr5 49945088 49945420 -102591839 + ORR1E LTR MaLR 18 355 -4 6 966 290 357 81 35 chr5 49945738 49945912 -102591347 - L2 LINE L2 -450 2969 2788 6 966 37 0 0 0 chr5 49946984 49947021 -102590238 + AT_rich Low_complexity Low_complexity 1 37 0 6 966 2358 91 233 5 chr5 49947041 49947428 -102589831 + MT2C_Mm LTR ERVL 1 475 0 6 966 229 194 0 0 chr5 49947530 49947566 -102589693 - ID4 SINE ID -47 36 1 6 966 22 0 0 0 chr5 49947590 49947612 -102589647 + AT_rich Low_complexity Low_complexity 1 22 0 6 966 602 60 0 12 chr5 49947750 49947834 -102589425 + (GAAA)n Simple_repeat Simple_repeat 3 85 0 6 966 250 216 184 10 chr5 49948329 49948427 -102588832 - MIR SINE MIR -30 232 118 6 966 318 50 0 0 chr5 49948630 49948670 -102588589 + (TCCA)n Simple_repeat Simple_repeat 3 42 0 6 966 686 225 8 0 chr5 49949809 49949938 -102587321 + B1_Mur2 SINE Alu 3 132 -17 6 966 250 311 72 24 chr5 49950242 49950367 -102586892 + MIRc SINE MIR 7 137 -131 6 966 501 104 0 0 chr5 49950677 49950754 -102586505 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 966 421 255 37 73 chr5 49952018 49952289 -102584970 - MLT1A0 LTR MaLR -2 372 1 6 966 21 36 0 0 chr5 49952289 49952317 -102584942 + AT_rich Low_complexity Low_complexity 1 28 0 6 966 639 337 17 0 chr5 49952739 49952911 -102584348 - ID_B1 SINE B4 -49 175 1 6 966 446 271 212 0 chr5 49953056 49953174 -102584085 + RSINE1 SINE B4 3 145 -20 6 966 1853 198 40 43 chr5 49953701 49954124 -102583135 - Lx5 LINE L1 -3 7047 6626 6 966 315 291 77 65 chr5 49956230 49956399 -102580860 - MLT1C LTR MaLR -10 457 287 6 966 255 324 85 9 chr5 49956612 49956718 -102580541 - MTD LTR MaLR 0 419 306 6 966 2776 63 8 19 chr5 49956718 49957090 -102580169 + L1Md_F2 LINE L1 6205 6572 -10 6 966 258 105 0 0 chr5 49957103 49957141 -102580118 + (A)n Simple_repeat Simple_repeat 1 38 0 6 966 854 257 68 18 chr5 49957141 49957405 -102579854 - MTD LTR MaLR -108 311 1 6 966 1203 277 204 18 chr5 49957405 49957894 -102579365 - MTC-int LTR MaLR 0 1258 679 6 966 291 343 39 19 chr5 49957923 49958027 -102579232 - MTC-int LTR MaLR -779 479 374 6 966 340 224 26 0 chr5 49958038 49958114 -102579145 - MTC-int LTR MaLR -1140 118 41 6 966 339 315 53 7 chr5 49958288 49958438 -102578821 + Tigger7 DNA MER2_type 5 161 -2330 6 966 420 302 8 0 chr5 49958638 49958764 -102578495 - MLT1A0 LTR MaLR -11 354 228 6 966 1032 256 96 23 chr5 49958768 49959112 -102578147 - MTE2b LTR MaLR -10 369 1 6 966 252 0 0 0 chr5 49959581 49959609 -102577650 + (TA)n Simple_repeat Simple_repeat 1 28 0 6 966 1156 74 60 44 chr5 49960843 49961026 -102576233 + B2_Mm2 SINE B2 1 186 -9 6 966 546 57 0 0 chr5 49962533 49962603 -102574656 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 966 1199 217 76 62 chr5 49963625 49963994 -102573265 + ORR1D1 LTR MaLR 1 374 0 6 966 248 310 56 45 chr5 49964043 49964222 -102573037 - Lx8 LINE L1 -1190 6283 6103 6 966 2745 70 0 0 chr5 49964417 49964789 -102572470 + L1_Mus2 LINE L1 5660 6031 -535 6 966 1155 94 0 0 chr5 49964810 49964981 -102572278 + (TG)n Simple_repeat Simple_repeat 1 171 0 6 966 594 212 72 18 chr5 49964995 49965166 -102572093 + MTD LTR MaLR 195 416 -3 6 966 297 284 11 22 chr5 49965700 49965790 -102571469 + CT-rich Low_complexity Low_complexity 5 93 0 6 966 183 235 0 0 chr5 49965983 49966034 -102571225 + (ATG)n Simple_repeat Simple_repeat 3 53 0 6 966 262 355 21 0 chr5 49966038 49966131 -102571128 - RSINE1 SINE B4 -8 157 63 6 966 204 367 76 29 chr5 49966396 49966567 -102570692 + L2c LINE L2 2975 3153 -234 6 966 23 0 0 0 chr5 49966891 49966914 -102570345 + AT_rich Low_complexity Low_complexity 1 23 0 6 966 545 323 32 0 chr5 49966925 49967083 -102570176 - RSINE1 SINE B4 -2 163 1 6 966 303 261 41 1 chr5 49967232 49967346 -102569913 + L1MB4 LINE L1 5554 5670 -510 6 966 437 296 53 22 chr5 49967402 49967627 -102569632 + L1MB4 LINE L1 5761 5992 -188 6 966 561 167 0 0 chr5 49967667 49967769 -102569490 + GA-rich Low_complexity Low_complexity 3 104 0 6 966 1221 106 0 0 chr5 49967770 49967950 -102569309 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 966 633 281 119 25 chr5 49968038 49968440 -102568819 + L1MC LINE L1 5287 5726 -618 6 966 3821 58 4 0 chr5 49968446 49968926 -102568333 - L1Md_F2 LINE L1 -12 6570 6089 6 966 844 87 27 7 chr5 49969072 49969222 -102568037 + (TA)n Simple_repeat Simple_repeat 1 153 0 6 966 10533 64 8 6 chr5 49969366 49971513 -102565746 - L1Md_F2 LINE L1 -1 6581 4429 6 966 367 244 189 109 chr5 49971666 49972016 -102565243 + L1M2 LINE L1 3386 3763 -2380 6 966 718 205 288 37 chr5 49973444 49973626 -102563633 - ORR1D1 LTR MaLR 0 374 147 6 966 634 12 0 45 chr5 49973626 49973715 -102563544 + (GA)n Simple_repeat Simple_repeat 2 86 0 6 966 718 205 288 37 chr5 49973715 49973831 -102563428 - ORR1D1 LTR MaLR -228 146 2 6 966 404 78 33 22 chr5 49973908 49974000 -102563259 + (TTTTG)n Simple_repeat Simple_repeat 3 95 0 6 966 1180 75 0 0 chr5 49974000 49974147 -102563112 - B1_Mus2 SINE Alu 0 147 1 6 966 192 184 0 0 chr5 49974198 49974247 -102563012 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 6 966 297 0 0 0 chr5 49974259 49974292 -102562967 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 966 602 299 186 71 chr5 49974338 49974590 -102562669 - B4 SINE B4 -9 283 3 6 966 1431 297 46 28 chr5 49974647 49975143 -102562116 - RMER19C LTR ERVK 0 611 107 6 966 202 308 58 0 chr5 49975182 49975234 -102562025 + MER5A DNA MER1_type 7 61 -128 6 966 1147 287 57 15 chr5 49975235 49975571 -102561688 - ORR1E LTR MaLR -9 350 1 6 966 26 0 0 0 chr5 49975819 49975845 -102561414 + AT_rich Low_complexity Low_complexity 1 26 0 6 966 948 77 31 0 chr5 49975974 49976104 -102561155 + B1_Mus2 SINE Alu 2 135 -12 6 966 789 103 0 0 chr5 49976105 49976222 -102561037 + (CAGAA)n Simple_repeat Simple_repeat 4 120 0 6 966 1349 33 0 5 chr5 49977647 49977861 -102559398 + (GAA)n Simple_repeat Simple_repeat 1 212 0 6 966 208 229 21 0 chr5 49977879 49977927 -102559332 + GA-rich Low_complexity Low_complexity 3 51 0 6 966 667 161 35 75 chr5 49978101 49978275 -102558984 - Lx4A LINE L1 -2 7056 6890 6 966 1218 98 0 0 chr5 49978382 49978677 -102558582 + (CA)n Simple_repeat Simple_repeat 1 295 0 6 966 2167 99 3 3 chr5 49978776 49979100 -102558159 + Lx LINE L1 5837 6160 -494 6 966 2958 126 35 2 chr5 49979638 49980122 -102557137 + Lx LINE L1 6155 6654 0 6 966 683 243 0 65 chr5 49980188 49980358 -102556901 + RSINE1 SINE B4 6 165 0 6 966 457 313 47 7 chr5 49981822 49981970 -102555289 + Lx7 LINE L1 6812 6965 -731 6 966 1572 133 16 100 chr5 49981994 49982304 -102554955 + ORR1B1 LTR MaLR 39 322 -72 6 966 1768 112 0 0 chr5 49982304 49982571 -102554688 + L1_Mus4 LINE L1 6261 6527 -109 6 966 2764 99 47 68 chr5 49982571 49983058 -102554201 + RLTR44C LTR ERVK 1 477 -25 6 966 649 73 0 18 chr5 49983069 49983180 -102554079 + L1_Mus4 LINE L1 6522 6630 -6 6 966 297 51 0 0 chr5 49983191 49983230 -102554029 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 966 604 81 0 33 chr5 49983234 49983324 -102553935 + ORR1A4 LTR MaLR 243 329 0 6 966 714 266 143 12 chr5 49983325 49983584 -102553675 + Lx7 LINE L1 6981 7273 -423 6 966 603 0 0 0 chr5 49983603 49983670 -102553589 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 966 24 67 0 0 chr5 49983790 49983835 -102553424 + AT_rich Low_complexity Low_complexity 1 45 0 6 966 973 285 58 23 chr5 49983840 49984114 -102553145 - MTD LTR MaLR -15 404 120 6 966 330 50 17 0 chr5 49984114 49984174 -102553085 + L1Md_F3 LINE L1 6524 6584 0 6 966 973 286 84 23 chr5 49984174 49984253 -102553006 - MTD LTR MaLR -300 119 40 6 966 193 296 61 12 chr5 49986201 49986283 -102550976 + L2a LINE L2 3283 3368 -58 6 966 1095 291 69 143 chr5 49986871 49987438 -102549821 + Charlie1 DNA MER1_type 1587 2147 -634 6 966 675 241 28 22 chr5 49987438 49987616 -102549643 + B3A SINE B2 4 182 -16 6 966 546 16 0 0 chr5 49987623 49987686 -102549573 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 966 1095 291 69 143 chr5 49987686 49987932 -102549327 + Charlie1 DNA MER1_type 2148 2329 -452 6 966 941 216 14 18 chr5 49987932 49988149 -102549110 - B3 SINE B2 0 216 1 6 966 1095 291 69 143 chr5 49988149 49988608 -102548651 + Charlie1 DNA MER1_type 2330 2774 -7 6 966 2101 89 109 16 chr5 49989597 49989917 -102547342 - Lx3_Mus LINE L1 0 7009 6660 6 966 1679 99 4 35 chr5 49989917 49990178 -102547081 - Lx3_Mus LINE L1 -486 6523 6271 6 966 404 208 0 10 chr5 49991087 49991184 -102546075 + GA-rich Low_complexity Low_complexity 2 97 0 6 966 278 312 42 0 chr5 49992048 49992144 -102545115 - L2a LINE L2 0 3426 3327 6 966 287 344 81 38 chr5 49992275 49992435 -102544824 + MLT1A0 LTR MaLR 119 285 -80 6 966 249 226 84 72 chr5 49993085 49993252 -102544007 + L1MEg LINE L1 1420 1588 -4496 6 966 3531 149 42 14 chr5 49993918 49994623 -102542636 + RMER6A LTR ERVK 1 756 0 6 966 474 172 120 82 chr5 49995586 49995635 -102541624 - RMER6C LTR ERVK -37 653 596 6 966 1318 54 16 42 chr5 49995635 49995828 -102541431 - L1Md_F3 LINE L1 0 6584 6397 6 966 474 172 120 82 chr5 49995828 49995946 -102541313 - RMER6C LTR ERVK -95 595 489 6 966 4216 52 0 0 chr5 49995946 49996449 -102540810 - RLTR1C LTR ERV1 0 503 1 6 966 474 172 120 82 chr5 49996449 49996464 -102540795 - RMER6C LTR ERVK -202 488 463 6 966 2161 201 128 15 chr5 49996513 49997099 -102540160 - RMER6C LTR ERVK -38 652 1 7 966 343 345 0 0 chr5 49997575 49997688 -102539571 + PB1D7 SINE Alu 1 113 -7 7 966 351 0 0 0 chr5 49998938 49998977 -102538282 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 966 534 31 0 0 chr5 49998977 49999040 -102538219 + (GA)n Simple_repeat Simple_repeat 1 64 0 7 966 1093 203 51 4 chr5 49999509 49999745 -102537514 + MT2A LTR ERVL 1 247 -286 7 966 1415 158 59 31 chr5 49999745 50000000 -102537259 - RLTR14 LTR ERV1 0 382 121 7 966 677 176 8 0 chr5 50000000 50000119 -102537140 - RLTR14 LTR ERV1 -262 120 1 1 966 895 205 89 10 chr5 50000119 50000319 -102536940 + MT2A LTR ERVL 244 459 -74 2 966 38 22 0 0 chr5 50000327 50000372 -102536887 + AT_rich Low_complexity Low_complexity 1 45 0 3 966 598 86 43 0 chr5 50000388 50000504 -102536755 + (TA)n Simple_repeat Simple_repeat 2 122 0 4 966 1720 141 8 0 chr5 50000527 50000783 -102536476 + ORR1A3 LTR MaLR 61 318 -8 5 966 201 170 57 0 chr5 50000789 50000842 -102536417 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 966 769 257 24 90 chr5 50000847 50001344 -102535915 + RLTR11B LTR ERVK 7 427 -26 7 966 253 174 0 28 chr5 50001382 50001453 -102535806 + (TA)n Simple_repeat Simple_repeat 2 70 0 8 966 232 133 17 0 chr5 50001453 50001513 -102535746 + MT2A LTR ERVL 473 533 0 9 966 244 251 14 27 chr5 50003086 50003168 -102534091 - MTE2b LTR MaLR -31 348 268 1 966 545 214 51 44 chr5 50003467 50003604 -102533655 + RMER5 LTR ERV1 393 530 -4 1 966 325 325 90 35 chr5 50003628 50003924 -102533335 + MLT1G LTR MaLR 86 471 -120 1 966 359 21 0 20 chr5 50003948 50003997 -102533262 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1 966 354 322 87 32 chr5 50004155 50004373 -102532886 - LTR33B LTR ERVL -15 488 259 1 966 275 315 0 90 chr5 50004396 50004518 -102532741 - LTR33B LTR ERVL -459 170 60 1 966 587 221 165 22 chr5 50005212 50005403 -102531856 + ORR1D2 LTR MaLR 168 394 0 1 966 1738 193 123 3 chr5 50005563 50005937 -102531322 - MTC LTR MaLR -2 419 1 1 966 489 34 0 0 chr5 50006809 50006868 -102530391 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 966 238 319 25 42 chr5 50007452 50007570 -102529689 + MLT1H LTR MaLR 432 547 -2 1 966 335 273 96 32 chr5 50007572 50007697 -102529562 - MLT1J1 LTR MaLR -276 168 36 1 966 333 174 0 0 chr5 50007805 50007874 -102529385 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 966 227 314 0 0 chr5 50008066 50008117 -102529142 + ID_B1 SINE B4 76 126 -98 2 966 290 294 153 0 chr5 50008081 50008166 -102529093 + PB1D10 SINE Alu 10 107 -10 2 966 230 218 55 0 chr5 50008289 50008344 -102528915 + MTD LTR MaLR 1 58 -361 2 966 283 23 22 22 chr5 50008346 50008391 -102528868 + (CAAAA)n Simple_repeat Simple_repeat 5 49 0 2 966 1153 253 63 71 chr5 50008402 50008696 -102528563 + MTD LTR MaLR 57 347 -72 2 966 210 37 0 0 chr5 50008696 50008723 -102528536 + (GGAAA)n Simple_repeat Simple_repeat 3 29 0 2 966 1153 253 63 71 chr5 50008723 50008794 -102528465 + MTD LTR MaLR 348 419 0 2 966 2276 169 14 21 chr5 50009052 50009335 -102527924 + RLTR28 LTR ERVL 98 374 -150 2 966 1776 138 48 66 chr5 50009335 50009668 -102527591 + ORR1A2 LTR MaLR 1 327 0 2 966 2276 169 14 21 chr5 50009668 50009814 -102527445 + RLTR28 LTR ERVL 375 524 0 2 966 238 284 97 10 chr5 50009929 50010032 -102527227 + MLT1A1 LTR MaLR 11 122 -286 2 966 287 286 0 61 chr5 50010122 50010204 -102527055 + MLT1A1 LTR MaLR 288 364 -44 2 966 180 77 0 0 chr5 50010204 50010230 -102527029 + (TTATA)n Simple_repeat Simple_repeat 2 27 0 2 966 290 269 0 13 chr5 50010237 50010303 -102526956 + GA-rich Low_complexity Low_complexity 3 68 0 3 966 1191 107 0 0 chr5 50010303 50010481 -102526778 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 3 966 290 269 0 13 chr5 50010481 50010493 -102526766 + polypurine Low_complexity Low_complexity 69 80 0 3 966 329 321 189 25 chr5 50010609 50010852 -102526407 - MLT1J1-int LTR MaLR -636 751 469 3 966 243 330 49 147 chr5 50011003 50011248 -102526011 - MLT1J1-int LTR MaLR -1156 231 11 3 966 540 363 87 10 chr5 50011346 50011644 -102525615 - MLT1J1 LTR MaLR -116 328 8 3 966 26 64 0 0 chr5 50011984 50012031 -102525228 + AT_rich Low_complexity Low_complexity 1 47 0 3 966 262 293 129 0 chr5 50012169 50012309 -102524950 + MER20 DNA MER1_type 56 213 -6 3 966 1209 268 51 21 chr5 50012376 50012765 -102524494 + Lx6 LINE L1 7032 7432 -28 3 966 927 145 163 15 chr5 50012855 50013051 -102524208 - URR1A DNA MER1_type 0 226 2 3 966 357 319 59 36 chr5 50013512 50013733 -102523526 + HAL1 LINE L1 2269 2494 -13 3 966 1281 139 0 0 chr5 50014701 50015019 -102522240 + (CA)n Simple_repeat Simple_repeat 1 318 0 3 966 414 213 11 0 chr5 50015887 50015981 -102521278 - L1MA8 LINE L1 -345 5946 5852 4 966 436 139 18 18 chr5 50016030 50016140 -102521119 - L1Md_F2 LINE L1 0 6582 6473 4 966 689 94 19 0 chr5 50016140 50016246 -102521013 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 4 966 1104 96 0 0 chr5 50016247 50016393 -102520866 - B1_Mus2 SINE Alu 0 147 2 4 966 1427 60 0 0 chr5 50016393 50016575 -102520684 - L1_Mus1 LINE L1 -88 6479 6298 4 966 405 310 61 0 chr5 50016596 50016809 -102520450 + L1MA9 LINE L1 6021 6246 -66 4 966 261 234 0 0 chr5 50017197 50017261 -102519998 + CT-rich Low_complexity Low_complexity 1 64 0 4 966 328 260 8 112 chr5 50017535 50017669 -102519590 + MT2B LTR ERVL 145 264 -337 4 966 777 205 0 0 chr5 50017571 50017698 -102519561 + B1_Mur2 SINE Alu 17 143 -6 4 966 1903 51 0 0 chr5 50017706 50017940 -102519319 + L1Md_T LINE L1 6346 6579 -3 4 966 218 184 0 0 chr5 50017940 50017978 -102519281 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 5 966 2349 211 43 27 chr5 50017978 50018069 -102519190 - RLTR20B1 LTR ERVK 0 563 470 5 966 441 0 0 0 chr5 50018069 50018118 -102519141 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 966 2349 211 43 27 chr5 50018118 50018580 -102518679 - RLTR20B1 LTR ERVK -94 469 3 5 966 1671 184 11 13 chr5 50018833 50019164 -102518095 - ORR1B2 LTR MaLR -14 353 1 5 966 1822 146 104 166 chr5 50019198 50019494 -102517765 + RLTR11A LTR ERVK 1 253 -275 5 966 1047 97 0 0 chr5 50019494 50019648 -102517611 + (GAA)n Simple_repeat Simple_repeat 1 154 0 5 966 1822 146 104 166 chr5 50019648 50019845 -102517414 + RLTR11A LTR ERVK 254 444 -84 5 966 327 25 0 0 chr5 50019845 50019885 -102517374 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 966 1822 146 104 166 chr5 50019885 50019950 -102517309 + RLTR11A LTR ERVK 445 524 -4 5 966 660 329 93 20 chr5 50020572 50020873 -102516386 - MER21B LTR ERV1 -528 335 13 5 966 1112 308 113 54 chr5 50021543 50022688 -102514571 + Lx9 LINE L1 6382 7593 -51 5 966 26 50 0 0 chr5 50023151 50023191 -102514068 + AT_rich Low_complexity Low_complexity 1 40 0 5 966 226 0 59 0 chr5 50024785 50024819 -102512440 + (TA)n Simple_repeat Simple_repeat 2 37 0 6 966 667 33 22 0 chr5 50025676 50025766 -102511493 + (TAGA)n Simple_repeat Simple_repeat 4 95 0 6 966 215 125 25 0 chr5 50025803 50025843 -102511416 + (GAA)n Simple_repeat Simple_repeat 3 43 0 6 966 324 0 0 0 chr5 50025922 50025958 -102511301 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 966 364 283 113 28 chr5 50025960 50026102 -102511157 + MIRm SINE MIR 13 166 -110 6 966 837 270 20 44 chr5 50026199 50026497 -102510762 - RLTR15 LTR ERVK -68 291 1 6 966 285 183 0 0 chr5 50027536 50027596 -102509663 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 966 792 243 47 112 chr5 50028717 50028995 -102508264 + RMER1C Other Other 1069 1328 -14 6 966 321 333 18 70 chr5 50030461 50030632 -102506627 + L3 LINE CR1 3931 4092 -397 6 966 484 342 52 21 chr5 50032149 50032362 -102504897 + ORR1E LTR MaLR 1 218 -160 6 966 666 0 0 0 chr5 50032362 50032436 -102504823 + (TC)n Simple_repeat Simple_repeat 1 74 0 7 966 288 355 90 71 chr5 50032436 50032589 -102504670 + ORR1E LTR MaLR 219 374 -4 6 966 190 311 73 28 chr5 50032841 50032990 -102504269 + L2a LINE L2 3194 3407 -19 7 966 558 58 11 22 chr5 50033286 50033375 -102503884 + (TA)n Simple_repeat Simple_repeat 2 89 0 7 966 612 116 0 0 chr5 50034095 50034190 -102503069 + (TATATG)n Simple_repeat Simple_repeat 4 98 0 7 966 1984 189 314 0 chr5 50034529 50035090 -102502169 + RMER19A LTR ERVK 1 737 0 7 966 22 0 0 0 chr5 50035149 50035171 -102502088 + AT_rich Low_complexity Low_complexity 1 22 0 7 966 569 250 23 14 chr5 50036785 50037000 -102500259 + L1_Mur3 LINE L1 5216 5432 -448 7 966 293 209 0 0 chr5 50037706 50037773 -102499486 + Lx6 LINE L1 7390 7456 -4 7 966 203 400 0 0 chr5 50038561 50038631 -102498628 - MIR SINE MIR -172 90 21 7 966 21 0 0 0 chr5 50038965 50038986 -102498273 + AT_rich Low_complexity Low_complexity 1 21 0 7 966 227 208 63 25 chr5 50039766 50039845 -102497414 + (CAGAGA)n Simple_repeat Simple_repeat 3 84 0 8 966 693 0 0 0 chr5 50039850 50039927 -102497332 + (GA)n Simple_repeat Simple_repeat 1 77 0 8 966 313 314 86 25 chr5 50040001 50040133 -102497126 + MLT1B LTR MaLR 1 157 -233 8 966 936 274 69 53 chr5 50040133 50040658 -102496601 - MT2A LTR ERVL 0 533 1 8 966 313 306 185 46 chr5 50040658 50040800 -102496459 + MLT1B LTR MaLR 158 334 -56 8 966 473 361 0 0 chr5 50040947 50041077 -102496182 + ID_B1 SINE B4 86 215 -9 8 966 186 103 0 0 chr5 50041087 50041116 -102496143 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 8 966 2630 64 8 53 chr5 50041143 50041522 -102495737 - L1Md_F2 LINE L1 -1 6581 6220 8 966 2671 33 6 6 chr5 50041545 50041876 -102495383 - L1Md_F2 LINE L1 0 6582 6252 8 966 23 33 0 0 chr5 50042095 50042125 -102495134 + AT_rich Low_complexity Low_complexity 1 30 0 8 966 1269 222 62 111 chr5 50042845 50043234 -102494025 - ORR1D1 LTR MaLR -4 370 1 8 966 208 357 59 12 chr5 50043516 50043601 -102493658 - L2a LINE L2 -335 3091 3003 9 966 239 184 60 20 chr5 50043601 50043651 -102493608 + ORR1D1 LTR MaLR 107 158 -216 9 966 7505 64 9 2 chr5 50045864 50046824 -102490435 + L1Md_F2 LINE L1 5616 6582 0 9 966 353 324 10 104 chr5 50047561 50047754 -102489505 + MER34A1 LTR ERV1 18 192 -395 9 966 335 294 88 0 chr5 50047899 50048035 -102489224 + MER34A1 LTR ERV1 420 567 -20 9 966 23 0 0 0 chr5 50049228 50049251 -102488008 + AT_rich Low_complexity Low_complexity 1 23 0 9 966 620 319 0 0 chr5 50049251 50049389 -102487870 + RSINE1 SINE B4 3 140 -25 9 966 456 19 0 0 chr5 50049396 50049449 -102487810 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 966 37 0 0 0 chr5 50049449 50049486 -102487773 + AT_rich Low_complexity Low_complexity 1 37 0 9 966 493 286 0 69 chr5 50052356 50052529 -102484730 + RSINE1 SINE B4 3 163 -2 9 966 1178 57 6 0 chr5 50052540 50052699 -102484560 + (TAGA)n Simple_repeat Simple_repeat 1 160 0 9 966 235 299 44 33 chr5 50054712 50054802 -102482457 + MER87 LTR ERV1 400 490 -51 1 966 576 275 66 81 chr5 50054953 50055289 -102481970 - ORR1E LTR MaLR -3 376 29 1 966 1628 295 61 30 chr5 50055292 50055852 -102481407 - ORR1E-int LTR MaLR -42 1538 962 1 966 2431 338 39 24 chr5 50056521 50057462 -102479797 - ORR1E-int LTR MaLR -625 955 1 1 966 753 310 80 77 chr5 50057464 50057814 -102479445 - ORR1E LTR MaLR 0 359 9 1 966 34908 65 1 25 chr5 50058119 50064214 -102473045 + L1Md_T LINE L1 99 5586 -297 1 966 8009 57 0 0 chr5 50064214 50065230 -102472029 + L1Md_T LINE L1 5587 6582 0 1 966 432 0 0 0 chr5 50065256 50065304 -102471955 + (A)n Simple_repeat Simple_repeat 1 48 0 1 966 204 40 0 0 chr5 50065330 50065355 -102471904 + (A)n Simple_repeat Simple_repeat 1 25 0 1 966 455 332 150 9 chr5 50065490 50065703 -102471556 - MLT1A0 LTR MaLR -21 344 102 1 966 235 370 33 16 chr5 50065893 50066014 -102471245 + LTR16A LTR ERVL 208 330 -121 1 966 201 211 31 21 chr5 50066591 50066688 -102470571 + (CATA)n Simple_repeat Simple_repeat 1 98 0 1 966 295 304 92 52 chr5 50066714 50066867 -102470392 - MIR3 SINE MIR -13 195 37 1 966 180 195 0 24 chr5 50068266 50068308 -102468951 + L2a LINE L2 3376 3416 -10 1 966 303 262 0 15 chr5 50069357 50069423 -102467836 + ID4_ SINE ID 2 66 -17 1 967 571 266 165 41 chr5 50069536 50069924 -102467335 + L1MC4 LINE L1 7325 7760 -282 1 967 341 297 78 6 chr5 50071158 50071324 -102465935 - Charlie2b DNA MER1_type -723 2059 1882 1 967 263 315 0 0 chr5 50071696 50071769 -102465490 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 1 967 304 241 61 26 chr5 50072043 50072158 -102465101 - MER103 DNA DNA -9 157 39 1 967 510 61 0 0 chr5 50072783 50072849 -102464410 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 967 330 347 21 10 chr5 50074112 50074208 -102463051 + RSINE1 SINE B4 1 97 -68 1 967 558 317 102 19 chr5 50074210 50074474 -102462785 - MLT2B1 LTR ERVL -135 385 100 1 967 857 258 18 0 chr5 50074527 50074690 -102462569 + B3A SINE B2 1 166 -32 1 967 432 86 0 0 chr5 50074690 50074760 -102462499 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 967 378 0 0 0 chr5 50074760 50074801 -102462458 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 967 654 13 0 0 chr5 50074899 50074974 -102462285 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 967 632 356 42 10 chr5 50075569 50075881 -102461378 + MLT1A0 LTR MaLR 32 353 -12 1 967 236 182 18 0 chr5 50076318 50076373 -102460886 - Lx8 LINE L1 -3 7470 7415 1 967 1817 159 30 3 chr5 50077044 50077347 -102459912 + RLTR10E LTR ERVK 1 311 0 1 967 890 283 5 0 chr5 50077574 50077779 -102459480 - B3 SINE B2 -10 206 1 1 967 442 274 268 0 chr5 50077882 50078050 -102459209 - MTE2b LTR MaLR 0 379 167 1 967 422 96 14 0 chr5 50078053 50078126 -102459133 + (TTTTC)n Simple_repeat Simple_repeat 2 75 0 1 967 1113 54 0 39 chr5 50078127 50078280 -102458979 - B1_Mus1 SINE Alu 0 148 2 1 967 876 112 53 0 chr5 50078284 50078436 -102458823 - L1_Mus3 LINE L1 -2 6636 6477 1 967 722 303 0 6 chr5 50078438 50078604 -102458655 + ID_B1 SINE B4 60 224 0 1 967 1192 73 27 4 chr5 50078615 50078875 -102458384 + (TAGA)n Simple_repeat Simple_repeat 1 266 0 1 967 223 182 0 22 chr5 50078888 50078933 -102458326 + (CAGA)n Simple_repeat Simple_repeat 3 46 0 1 967 570 257 54 7 chr5 50079597 50079746 -102457513 - MTD LTR MaLR 0 419 264 1 967 36 0 0 0 chr5 50080138 50080174 -102457085 + AT_rich Low_complexity Low_complexity 1 36 0 1 967 993 110 0 33 chr5 50080188 50080338 -102456921 + B1_Mm SINE Alu 1 145 -2 1 967 1121 210 103 70 chr5 50081002 50081299 -102455960 + ORR1D2 LTR MaLR 1 310 -60 1 967 1445 210 27 108 chr5 50081299 50081705 -102455554 + ORR1C1 LTR MaLR 5 377 -1 1 967 1121 210 103 70 chr5 50081705 50081765 -102455494 + ORR1D2 LTR MaLR 311 370 0 1 967 23350 155 21 4 chr5 50081773 50085588 -102451671 + L1_Mus4 LINE L1 788 4663 -1220 1 967 303 85 0 0 chr5 50085588 50085635 -102451624 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 1 967 23350 133 11 3 chr5 50085635 50087577 -102449682 + L1_Mus4 LINE L1 4664 6635 -1 1 967 387 0 0 0 chr5 50087661 50087704 -102449555 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1 967 207 0 0 0 chr5 50087746 50087769 -102449490 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1 967 287 304 67 74 chr5 50087769 50087918 -102449341 + L2a LINE L2 3266 3413 -13 1 967 2989 21 0 0 chr5 50088366 50088703 -102448556 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 967 9560 20 3 0 chr5 50088703 50089837 -102447422 - IAPEz-int LTR ERVK 0 6481 5345 1 967 24847 22 34 9 chr5 50089826 50092908 -102444351 - IAPEz-int LTR ERVK -3316 3165 8 1 967 2989 21 0 0 chr5 50092908 50093245 -102444014 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 967 228 247 12 49 chr5 50094677 50094758 -102442501 + T-rich Low_complexity Low_complexity 5 82 0 1 967 316 152 44 9 chr5 50095410 50095523 -102441736 + (TAGA)n Simple_repeat Simple_repeat 2 118 0 1 967 201 147 0 0 chr5 50095533 50095567 -102441692 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 1 967 762 267 97 31 chr5 50095792 50096279 -102440980 + L1M2 LINE L1 4303 4821 -1322 1 967 1390 74 29 5 chr5 50096312 50096516 -102440743 - L1Md_F2 LINE L1 0 6582 6374 1 967 251 244 0 24 chr5 50097447 50097531 -102439728 + (CACG)n Simple_repeat Simple_repeat 2 83 0 1 967 472 163 196 14 chr5 50097937 50098080 -102439179 - Lx7 LINE L1 -168 7528 7360 1 967 2254 239 50 25 chr5 50099148 50099843 -102437416 + Lx7 LINE L1 70 782 -6946 1 967 8487 169 52 22 chr5 50099842 50099959 -102437300 + Lx7 LINE L1 3956 4085 -1795 1 967 369 0 0 0 chr5 50099959 50100000 -102437259 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 967 8487 169 52 22 chr5 50100000 50100636 -102436623 + Lx7 LINE L1 4086 4731 -1149 1 967 198 71 0 0 chr5 50100636 50100664 -102436595 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 967 8487 172 51 21 chr5 50100664 50101846 -102435413 + Lx7 LINE L1 4732 5951 -1745 1 967 481 301 12 0 chr5 50101848 50102011 -102435248 - Lx7 LINE L1 -597 7099 6935 1 967 912 236 55 15 chr5 50102007 50102278 -102434981 + Lx7 LINE L1 7097 7378 -318 1 967 325 199 37 0 chr5 50102343 50102479 -102434780 + (TA)n Simple_repeat Simple_repeat 2 142 0 1 967 204 190 17 17 chr5 50102497 50102556 -102434703 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 967 229 167 0 20 chr5 50102596 50102645 -102434614 + Lx7 LINE L1 7378 7425 -271 1 967 345 47 0 0 chr5 50103002 50103045 -102434214 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 967 184 330 79 18 chr5 50104012 50104126 -102433133 + MIRb SINE MIR 55 175 -93 1 967 977 143 0 132 chr5 50105066 50105180 -102432079 + L1_Mur1 LINE L1 1819 1931 -3955 1 967 2423 70 41 3 chr5 50105180 50105495 -102431764 + ORR1A2 LTR MaLR 1 327 0 1 967 977 143 0 132 chr5 50105495 50105646 -102431613 + L1_Mur1 LINE L1 1932 2049 -3837 1 967 513 265 26 48 chr5 50106511 50106741 -102430518 - L1M2 LINE L1 -687 5625 5401 1 967 203 330 35 52 chr5 50106858 50106973 -102430286 - MIRm SINE MIR -139 137 25 1 967 330 121 0 0 chr5 50109116 50109182 -102428077 + (A)n Simple_repeat Simple_repeat 1 66 0 1 967 1101 226 37 20 chr5 50109860 50110104 -102427155 - MTD LTR MaLR 0 419 172 1 967 1668 186 3 11 chr5 50110111 50110394 -102426865 - MTC LTR MaLR -53 368 88 1 967 1843 251 67 33 chr5 50110383 50111385 -102425874 - ORR1D-int LTR MaLR -373 1136 91 1 967 46 68 0 0 chr5 50111843 50111931 -102425328 + AT_rich Low_complexity Low_complexity 1 88 0 1 967 216 0 0 0 chr5 50111936 50111960 -102425299 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 967 340 338 59 44 chr5 50112326 50112598 -102424661 - L1MEf LINE L1 -3689 2457 2182 1 967 252 228 21 21 chr5 50112613 50112707 -102424552 - L1MEf LINE L1 -4075 2167 2074 1 967 470 31 16 0 chr5 50112814 50112878 -102424381 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1 967 37275 50 4 5 chr5 50113033 50119316 -102417943 - L1Md_T LINE L1 0 6582 306 1 967 486 324 60 32 chr5 50121715 50121999 -102415260 - B4A SINE B4 0 292 1 1 967 193 406 10 0 chr5 50122254 50122355 -102414904 - MIR SINE MIR -76 132 31 1 967 2677 169 6 2 chr5 50122985 50123507 -102413752 - L1_Mur2 LINE L1 -898 4979 4456 1 967 6838 132 13 2 chr5 50123511 50125157 -102412102 + Lx LINE L1 4980 6647 -7 1 967 197 65 32 0 chr5 50125880 50125911 -102411348 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 1 967 514 232 155 30 chr5 50126083 50126283 -102410976 - MLT2C1 LTR ERVL -172 225 1 1 967 36927 16 0 3 chr5 50128804 50135424 -102401835 + L1Md_A LINE L1 1 5586 -297 1 967 9070 2 0 0 chr5 50135424 50136420 -102400839 + L1Md_A LINE L1 5587 6582 0 1 967 279 259 12 0 chr5 50138273 50138358 -102398901 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 967 1061 269 79 69 chr5 50138813 50139220 -102398039 - RMER13A LTR ERVK -449 411 1 1 967 39468 5 0 2 chr5 50139948 50146542 -102390717 - L1Md_A LINE L1 0 6582 1 1 967 297 0 0 0 chr5 50146581 50146614 -102390645 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 967 272 211 0 14 chr5 50146614 50146686 -102390573 + GA-rich Low_complexity Low_complexity 2 72 0 1 967 326 91 0 18 chr5 50146694 50146750 -102390509 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 1 967 182 279 228 0 chr5 50147124 50147203 -102390056 - L3b LINE CR1 -66 416 320 1 967 2061 167 23 44 chr5 50147203 50147429 -102389830 - Lx2B LINE L1 -943 6057 5907 1 967 2541 31 81 6 chr5 50147429 50147751 -102389508 - ORR1A0 LTR MaLR 0 346 1 1 967 14255 49 6 1 chr5 50147751 50149533 -102387726 - ORR1A0-int LTR MaLR 0 1792 1 1 967 2709 40 3 75 chr5 50149533 50149906 -102387353 - ORR1A0 LTR MaLR 0 346 1 1 967 2061 167 18 25 chr5 50149906 50150185 -102387074 - Lx2B LINE L1 -1094 5906 5626 1 967 3071 140 17 4 chr5 50150176 50150698 -102386561 + Lx2B LINE L1 5126 5654 -223 1 967 270 270 174 45 chr5 50151151 50151283 -102385976 - RMER15 LTR ERVL -2 573 425 1 967 197 373 13 0 chr5 50151837 50151912 -102385347 - MIRm SINE MIR -2 274 199 1 967 843 295 45 37 chr5 50154015 50154370 -102382889 + MLT1B LTR MaLR 29 386 -4 1 967 195 362 14 80 chr5 50154787 50154925 -102382334 + MIRb SINE MIR 23 151 -117 1 967 1359 62 0 0 chr5 50156187 50156365 -102380894 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1 967 4183 62 0 7 chr5 50156440 50156981 -102380278 - L1Md_F2 LINE L1 -11 6571 6035 1 967 762 313 105 54 chr5 50157389 50157760 -102379499 - MLT1A1 LTR MaLR -12 396 7 1 967 299 318 90 9 chr5 50157751 50157862 -102379397 - MLT1A0 LTR MaLR -229 136 17 1 967 299 274 172 31 chr5 50158182 50158310 -102378949 + MIR SINE MIR 35 180 -82 1 967 197 159 0 22 chr5 50158594 50158639 -102378620 + T-rich Low_complexity Low_complexity 2 45 0 1 967 352 336 9 45 chr5 50158865 50158977 -102378282 + ID_B1 SINE B4 79 186 -38 1 967 450 0 0 0 chr5 50159031 50159081 -102378178 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 967 349 346 153 35 chr5 50159084 50159592 -102377667 + MLT1E1A LTR MaLR 92 653 0 1 967 271 350 110 18 chr5 50160093 50160256 -102377003 - MLT1E1 LTR MaLR -361 293 116 1 967 300 362 30 24 chr5 50162261 50162428 -102374831 - MIR SINE MIR -50 212 45 1 967 24104 80 5 0 chr5 50162690 50163867 -102373392 - L1_Mus1 LINE L1 0 6567 5390 2 967 6320 51 0 1 chr5 50163867 50164647 -102372612 + L1Md_T LINE L1 5804 6582 0 2 967 24104 123 33 1 chr5 50164647 50169456 -102367803 - L1_Mus1 LINE L1 -494 5389 387 2 967 308 208 38 46 chr5 50169483 50169614 -102367645 - Lx9 LINE L1 -3 7641 7512 2 967 252 257 41 74 chr5 50170243 50170365 -102366894 - MLT1A LTR MaLR 0 374 257 2 967 627 297 10 50 chr5 50170803 50171005 -102366254 - B3A SINE B2 0 198 5 2 967 553 89 0 0 chr5 50171413 50171503 -102365756 - L1Md_F2 LINE L1 -12 6570 6481 2 967 3061 42 0 0 chr5 50171637 50171991 -102365268 + IAPEY2_LTR LTR ERVK 1 354 -3 2 967 320 287 53 11 chr5 50172316 50172411 -102364848 - MLT1A LTR MaLR -261 113 15 2 967 203 61 30 0 chr5 50174326 50174359 -102362900 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 2 967 246 128 0 0 chr5 50175629 50175668 -102361591 + (TAA)n Simple_repeat Simple_repeat 3 41 0 2 967 235 52 86 0 chr5 50175692 50175750 -102361509 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 967 228 277 0 0 chr5 50175868 50175933 -102361326 + (TGAA)n Simple_repeat Simple_repeat 3 67 0 2 967 781 219 7 0 chr5 50176071 50176217 -102361042 + B1_Mus1 SINE Alu 1 147 -1 2 967 255 316 114 66 chr5 50176364 50176591 -102360668 + MIR SINE MIR 9 246 -16 2 967 300 318 7 65 chr5 50176891 50177029 -102360230 + Charlie24 DNA MER1_type 233 362 -2088 2 967 22 0 0 0 chr5 50177049 50177071 -102360188 + AT_rich Low_complexity Low_complexity 1 22 0 2 967 1989 178 52 12 chr5 50177368 50177967 -102359292 - Lx6 LINE L1 -1359 6101 5480 2 967 680 208 22 6 chr5 50177965 50178144 -102359115 - Lx6 LINE L1 -558 5322 5141 2 967 789 253 123 15 chr5 50178397 50178658 -102358601 - MLT1B LTR MaLR -7 383 95 2 967 3056 227 74 32 chr5 50179196 50180329 -102356930 - RMER1B Other Other 0 1066 73 2 967 1038 363 108 24 chr5 50180448 50181198 -102356061 + Charlie24 DNA MER1_type 1261 2073 -377 2 967 295 278 50 17 chr5 50181425 50181557 -102355702 + MLT1F-int LTR MaLR 1063 1209 -200 2 967 307 331 173 53 chr5 50181841 50182141 -102355118 + MLT1F LTR MaLR 186 521 -27 2 967 933 120 11 22 chr5 50182310 50182489 -102354770 + A-rich Low_complexity Low_complexity 2 178 0 2 967 3346 109 2 0 chr5 50182495 50183001 -102354258 - L1_Mus3 LINE L1 -200 5683 5177 2 967 5246 95 7 43 chr5 50183000 50183086 -102354173 + L1_Mus3 LINE L1 5712 5797 -841 2 967 1120 48 13 58 chr5 50183086 50183240 -102354019 + B1_Mus1 SINE Alu 2 148 0 2 967 5246 95 7 43 chr5 50183240 50183980 -102353279 + L1_Mus3 LINE L1 5798 6508 -130 2 967 399 113 0 0 chr5 50183986 50184048 -102353211 + (A)n Simple_repeat Simple_repeat 1 62 0 2 967 1619 72 0 22 chr5 50184587 50184814 -102352445 - L1_Mus1 LINE L1 0 6567 6346 2 967 222 128 42 21 chr5 50184970 50185018 -102352241 + A-rich Low_complexity Low_complexity 2 50 0 2 967 261 0 0 0 chr5 50185394 50185423 -102351836 + (A)n Simple_repeat Simple_repeat 1 29 0 2 967 799 289 33 52 chr5 50185475 50185782 -102351477 - Lx8 LINE L1 -185 7288 6988 2 967 1265 251 143 3 chr5 50186057 50186385 -102350874 + ORR1D1 LTR MaLR 1 374 0 2 967 1583 179 48 0 chr5 50186478 50186790 -102350469 + Lx9 LINE L1 6724 7050 -594 2 967 607 95 0 12 chr5 50186809 50186894 -102350365 + B2_Mm2 SINE B2 2 85 -110 2 967 306 260 70 96 chr5 50186894 50186924 -102350335 + RSINE1 SINE B4 2 113 -179 2 967 261 0 0 0 chr5 50186956 50186985 -102350274 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 2 967 1465 239 88 47 chr5 50186985 50187476 -102349783 + Lx9 LINE L1 7052 7562 -82 2 967 23 33 0 0 chr5 50187489 50187519 -102349740 + AT_rich Low_complexity Low_complexity 1 30 0 2 967 519 82 0 0 chr5 50187559 50187632 -102349627 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 967 2593 227 84 2 chr5 50187645 50188277 -102348982 + Lx6 LINE L1 6766 7449 -11 2 967 731 101 126 0 chr5 50188298 50188417 -102348842 + B1_Mus2 SINE Alu 1 134 -13 2 967 345 24 0 0 chr5 50188417 50188459 -102348800 + (CAA)n Simple_repeat Simple_repeat 1 42 0 2 967 243 0 0 0 chr5 50188465 50188492 -102348767 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 967 32 43 0 0 chr5 50189051 50189097 -102348162 + AT_rich Low_complexity Low_complexity 1 46 0 2 967 648 349 4 57 chr5 50189221 50189485 -102347774 + B4 SINE B4 43 292 0 2 967 383 0 21 0 chr5 50191692 50191739 -102345520 + (TTA)n Simple_repeat Simple_repeat 3 50 0 2 967 264 59 0 0 chr5 50192281 50192315 -102344944 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 967 288 264 0 0 chr5 50192697 50192769 -102344490 + Lx9 LINE L1 5902 5973 -1671 2 967 356 168 295 0 chr5 50192826 50192921 -102344338 - RLTR25B LTR ERVK 0 1028 906 2 967 2951 189 50 131 chr5 50192897 50193612 -102343647 - RLTR25B LTR ERVK -262 766 118 2 967 243 0 0 0 chr5 50193612 50193639 -102343620 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 967 2951 189 50 131 chr5 50193639 50193723 -102343536 - RLTR25B LTR ERVK -911 117 32 2 967 3371 220 58 12 chr5 50193750 50194582 -102342677 + Lx9 LINE L1 6599 7471 -173 2 967 549 0 0 0 chr5 50194582 50194643 -102342616 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 967 3371 220 58 12 chr5 50194643 50194660 -102342599 + Lx9 LINE L1 7472 7487 -157 2 967 2733 41 0 0 chr5 50194700 50195038 -102342221 - ORR1A1 LTR MaLR -8 338 1 2 967 212 171 24 0 chr5 50195556 50195597 -102341662 + GA-rich Low_complexity Low_complexity 1 42 0 2 967 252 333 113 43 chr5 50196617 50196758 -102340501 + MIR SINE MIR 21 171 -91 2 967 26 30 0 0 chr5 50196803 50196836 -102340423 + AT_rich Low_complexity Low_complexity 1 33 0 2 967 180 0 0 0 chr5 50197402 50197422 -102339837 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 967 280 336 53 0 chr5 50197714 50197827 -102339432 - PB1D7 SINE Alu -1 119 1 2 967 958 226 48 10 chr5 50197850 50198056 -102339203 - B3 SINE B2 0 216 3 2 967 273 119 0 0 chr5 50199018 50199060 -102338199 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2 967 230 200 0 0 chr5 50199066 50199126 -102338133 + Lx9 LINE L1 7521 7580 -64 2 967 344 179 13 0 chr5 50199241 50199319 -102337940 + GA-rich Low_complexity Low_complexity 6 84 0 2 968 262 309 17 4 chr5 50200692 50200782 -102336477 + MIRc SINE MIR 14 107 -161 2 968 4135 120 16 7 chr5 50202303 50202922 -102334337 + Lx LINE L1 6027 6651 -3 2 968 204 40 0 0 chr5 50203262 50203287 -102333972 + (A)n Simple_repeat Simple_repeat 1 25 0 2 968 950 209 61 5 chr5 50203624 50203836 -102333423 + URR1B DNA MER1_type 1 224 -1 2 968 1376 62 5 33 chr5 50204044 50204228 -102333031 + B2_Mm1t SINE B2 1 179 -14 2 968 440 73 13 0 chr5 50204251 50204315 -102332944 + B2_Mm2 SINE B2 46 115 -83 2 968 2783 81 3 0 chr5 50205680 50206049 -102331210 - L1_Mus1 LINE L1 0 6567 6198 2 968 3824 73 6 0 chr5 50206049 50206569 -102330690 - L1_Mus1 LINE L1 -458 6109 5587 2 968 264 30 0 0 chr5 50208798 50208831 -102328428 + (A)n Simple_repeat Simple_repeat 1 33 0 2 968 512 274 0 8 chr5 50209225 50209343 -102327916 + PB1D7 SINE Alu 2 118 -2 2 968 28 29 0 0 chr5 50209440 50209475 -102327784 + AT_rich Low_complexity Low_complexity 1 35 0 2 968 499 83 0 8 chr5 50209872 50209958 -102327301 - Lx3_Mus LINE L1 -130 6879 6796 2 968 323 391 116 10 chr5 50211094 50211404 -102325855 - L4 LINE RTE -183 1846 1504 2 968 225 0 0 0 chr5 50211603 50211628 -102325631 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 968 185 293 56 72 chr5 50211808 50211933 -102325326 - MIRc SINE MIR -118 150 28 2 968 366 347 54 112 chr5 50211893 50212117 -102325142 + MIRb SINE MIR 47 257 -11 2 968 783 306 36 29 chr5 50213271 50213547 -102323712 - RMER5 LTR ERV1 -216 318 41 2 968 3658 133 72 53 chr5 50213733 50214542 -102322717 + RLTR25B LTR ERVK 16 860 -243 2 968 684 0 0 0 chr5 50214542 50214618 -102322641 + (GA)n Simple_repeat Simple_repeat 2 77 0 2 968 3658 130 60 48 chr5 50214618 50214650 -102322609 + RLTR25B LTR ERVK 784 824 -204 2 968 676 223 8 8 chr5 50214625 50214756 -102322503 + RLTR25B LTR ERVK 973 1103 0 2 968 589 256 15 8 chr5 50215138 50215268 -102321991 + B1F SINE Alu 1 131 -18 2 968 287 302 66 32 chr5 50215393 50215532 -102321727 - MLT1A0 LTR MaLR -217 157 5 2 968 189 329 90 45 chr5 50215548 50215637 -102321622 + L2b LINE L2 3273 3365 -10 2 968 221 341 32 21 chr5 50215964 50216057 -102321202 + B4A SINE B4 3 96 -196 2 968 250 321 174 0 chr5 50216101 50216210 -102321049 - MER58B DNA MER1_type -1 340 213 2 968 11122 51 6 4 chr5 50216235 50218436 -102318823 - L1Md_F2 LINE L1 -15 6567 4361 2 968 654 311 26 16 chr5 50218502 50218695 -102318564 + B4 SINE B4 86 280 -12 2 968 448 314 31 25 chr5 50219222 50219382 -102317877 + MLT1A0 LTR MaLR 163 323 -42 2 968 8658 75 13 1 chr5 50220676 50222544 -102314715 - L1Md_F2 LINE L1 -12 6570 4679 2 968 22 0 0 0 chr5 50222868 50222890 -102314369 + AT_rich Low_complexity Low_complexity 1 22 0 2 968 616 253 55 42 chr5 50223156 50223486 -102313773 - RMER17C LTR ERVK 0 410 77 2 968 758 188 16 92 chr5 50223485 50223790 -102313469 - RMER17B LTR ERVK -520 438 16 2 968 1137 214 45 113 chr5 50223787 50224124 -102313135 - MTE2a LTR MaLR -63 316 3 2 968 3070 71 0 8 chr5 50224135 50224534 -102312725 - MTA_Mm LTR MaLR 0 396 1 2 968 834 314 117 39 chr5 50224771 50225577 -102311682 + L1M4 LINE L1 42 910 -5632 2 968 2928 81 18 0 chr5 50225743 50226140 -102311119 + L1_Mus1 LINE L1 6150 6553 -14 2 968 219 139 0 0 chr5 50226140 50226176 -102311083 + (GAA)n Simple_repeat Simple_repeat 2 37 0 2 968 249 291 49 98 chr5 50226473 50226595 -102310664 + MT2B LTR ERVL 156 271 -330 2 968 409 209 113 10 chr5 50226493 50226612 -102310647 + B1_Mur2 SINE Alu 5 142 -7 2 968 298 184 0 0 chr5 50226624 50226673 -102310586 - 7SK RNA RNA -96 235 187 2 968 455 0 0 18 chr5 50227079 50227135 -102310124 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 968 398 318 105 33 chr5 50227225 50227501 -102309758 + L1M4 LINE L1 2608 2903 -3741 2 968 2063 117 12 58 chr5 50227553 50227898 -102309361 - ORR1A4 LTR MaLR 0 329 1 2 968 2148 113 0 63 chr5 50227898 50228246 -102309013 - ORR1A4 LTR MaLR -3 326 1 2 968 1040 109 7 0 chr5 50228669 50228816 -102308443 + B1_Mus1 SINE Alu 1 148 0 2 968 370 330 153 6 chr5 50228820 50229003 -102308256 - B3 SINE B2 -5 211 2 2 968 248 261 80 0 chr5 50229908 50229996 -102307263 + L1_Rod LINE L1 1170 1264 -6344 2 968 279 202 60 0 chr5 50230241 50230325 -102306934 + L1_Rod LINE L1 2089 2177 -3670 2 968 532 264 45 39 chr5 50230307 50230631 -102306628 + L1M2 LINE L1 2709 3032 -3114 2 968 1509 117 34 4 chr5 50230639 50230906 -102306353 + Lx3_Mus LINE L1 6072 6346 -663 3 968 1617 111 8 11 chr5 50230910 50231175 -102306084 - BGLII LTR ERVK 0 421 158 3 968 1185 20 0 39 chr5 50231191 50231344 -102305915 - B1_Mus2 SINE Alu 0 147 1 3 968 464 169 0 0 chr5 50231387 50231470 -102305789 - RMER3D-int LTR ERVK -2271 571 489 3 968 612 207 35 40 chr5 50231603 50231804 -102305455 - RMER3D-int LTR ERVK -1991 851 652 3 968 538 132 0 0 chr5 50231901 50231977 -102305282 + tRNA-Lys-AAG tRNA tRNA 1 76 0 3 968 925 157 13 13 chr5 50231980 50232135 -102305124 - BGLII LTR ERVK 0 421 267 3 968 6721 78 23 4 chr5 50232135 50233141 -102304118 + L1_Mus2 LINE L1 5543 6566 0 3 968 1346 62 122 19 chr5 50233166 50233379 -102303880 - BGLII LTR ERVK -186 235 1 3 968 2708 213 68 42 chr5 50233380 50234274 -102302985 - RMER3D-int LTR ERVK -1 2841 1925 3 968 2269 181 97 57 chr5 50234293 50234950 -102302309 - RMER3D-int LTR ERVK -1163 1679 470 3 968 216 0 0 0 chr5 50234971 50234995 -102302264 + (TCTCC)n Simple_repeat Simple_repeat 2 25 0 3 968 238 233 12 99 chr5 50235069 50235150 -102302109 + MT2B2 LTR ERVL 167 240 -344 3 968 636 203 31 8 chr5 50235078 50235188 -102302071 + B1_Mur3 SINE Alu 10 123 -26 3 968 306 0 0 0 chr5 50235188 50235222 -102302037 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 968 636 203 31 8 chr5 50235222 50235240 -102302019 + B1_Mur3 SINE Alu 124 141 -8 3 968 639 229 24 47 chr5 50235323 50235534 -102301725 + Lx7 LINE L1 7491 7696 0 3 968 325 322 35 10 chr5 50235563 50235764 -102301495 + L1MB8 LINE L1 5743 5948 -230 3 968 646 296 161 45 chr5 50235866 50236308 -102300951 + MT2A LTR ERVL 1 601 0 3 968 657 0 0 0 chr5 50236595 50236668 -102300591 + (GAA)n Simple_repeat Simple_repeat 2 74 0 3 968 794 288 4 0 chr5 50236875 50237108 -102300151 + Lx5 LINE L1 6780 7013 -37 3 968 453 36 0 0 chr5 50237735 50237790 -102299469 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 968 320 173 0 0 chr5 50237874 50237926 -102299333 - ORR1D1 LTR MaLR -55 319 268 3 968 227 195 0 0 chr5 50238260 50238301 -102298958 - ORR1D1 LTR MaLR -282 92 52 3 968 706 220 142 3 chr5 50238282 50238476 -102298783 + ORR1D1 LTR MaLR 103 366 -8 3 968 211 286 18 0 chr5 50240891 50240947 -102296312 - MIRb SINE MIR -184 84 28 3 968 444 350 20 25 chr5 50241026 50241228 -102296031 - MLT1A LTR MaLR -8 366 166 3 968 481 260 163 0 chr5 50241266 50241389 -102295870 + RSINE1 SINE B4 3 145 -20 3 968 600 40 0 0 chr5 50241390 50241465 -102295794 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 968 180 343 14 41 chr5 50241490 50241563 -102295696 - L2a LINE L2 -345 3081 3011 3 968 591 84 0 0 chr5 50241590 50241685 -102295574 + (TTTTG)n Simple_repeat Simple_repeat 1 95 0 3 968 1148 83 0 0 chr5 50241686 50241831 -102295428 - B1_Mus2 SINE Alu -1 146 2 3 968 351 0 0 0 chr5 50241887 50241926 -102295333 + (TTA)n Simple_repeat Simple_repeat 2 40 0 3 968 1139 69 0 0 chr5 50241926 50242070 -102295189 - B1_Mm SINE Alu -2 145 2 3 968 8457 10 0 0 chr5 50242145 50243529 -102293730 - L1Md_A LINE L1 0 6582 5199 3 968 4054 12 0 0 chr5 50243528 50244012 -102293247 + L1Md_A LINE L1 4694 5177 -706 3 968 358 287 24 65 chr5 50244014 50244137 -102293122 + MLT1B LTR MaLR 40 157 -233 3 968 724 258 185 18 chr5 50244561 50244829 -102292430 + ORR1E LTR MaLR 9 336 -43 3 968 426 269 16 63 chr5 50246342 50246469 -102290790 - ORR1E LTR MaLR -164 195 75 3 968 685 0 24 0 chr5 50246469 50246554 -102290705 + (TAAAAA)n Simple_repeat Simple_repeat 4 90 0 3 968 230 56 28 0 chr5 50246679 50246715 -102290544 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 3 968 5734 92 58 1 chr5 50247536 50248413 -102288846 + L1_Mus4 LINE L1 5668 6594 -42 3 968 433 352 57 31 chr5 50248576 50248878 -102288381 - MLT1J-int LTR MaLR -13 1374 1071 3 968 256 336 9 45 chr5 50249104 50249216 -102288043 - MLT1J-int LTR MaLR -589 798 691 3 968 1551 146 54 23 chr5 50249594 50249853 -102287406 + RLTR21 LTR ERVK 1 267 -1305 3 968 5960 60 0 3 chr5 50249853 50250942 -102286317 - L1Md_F2 LINE L1 -420 6162 5077 3 968 3091 65 10 7 chr5 50250942 50251347 -102285912 + L1Md_F2 LINE L1 6173 6578 -4 3 968 5791 143 40 18 chr5 50251347 50252382 -102284877 + RLTR21 LTR ERVK 250 1306 -266 3 968 198 0 0 0 chr5 50252713 50252735 -102284524 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 968 1177 314 81 33 chr5 50252829 50253909 -102283350 - L1_Mur3 LINE L1 -55 5825 4695 3 968 266 351 39 32 chr5 50254591 50254747 -102282512 + MIRc SINE MIR 6 162 -106 3 968 27548 118 24 11 chr5 50255110 50261024 -102276235 + L1_Mus2 LINE L1 613 6566 0 3 968 356 309 80 11 chr5 50261373 50261866 -102275393 + L1_Mur3 LINE L1 1360 1898 -3949 3 968 340 236 77 33 chr5 50261899 50262038 -102275221 - Lx7 LINE L1 -8 7688 7564 3 968 363 346 51 20 chr5 50262319 50262514 -102274745 - MLT1D LTR MaLR -2 503 303 3 968 1015 293 40 35 chr5 50262514 50262889 -102274370 + Lx8 LINE L1 6741 7117 -356 3 968 303 71 0 0 chr5 50262889 50262931 -102274328 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 968 405 353 21 59 chr5 50263148 50263437 -102273822 - MLT1D LTR MaLR -227 278 1 3 968 402 149 31 21 chr5 50263445 50263541 -102273718 + G-rich Low_complexity Low_complexity 1 97 0 3 968 447 221 12 0 chr5 50263618 50263704 -102273555 + PB1D9 SINE Alu 27 113 -7 3 968 247 346 46 8 chr5 50263749 50263880 -102273379 - Arthur1B DNA Tip100 -1087 138 3 3 968 24 0 0 0 chr5 50263997 50264021 -102273238 + AT_rich Low_complexity Low_complexity 1 24 0 3 968 27 0 0 0 chr5 50264076 50264103 -102273156 + AT_rich Low_complexity Low_complexity 1 27 0 3 968 2746 88 10 10 chr5 50264144 50264544 -102272715 + MTB LTR MaLR 1 400 0 3 968 521 340 64 30 chr5 50265011 50265275 -102271984 + B4A SINE B4 2 274 -18 3 968 228 389 162 8 chr5 50266173 50266432 -102270827 - L2b LINE L2 -3 3372 3074 3 968 1607 229 195 23 chr5 50266445 50266887 -102270372 + RLTR20D LTR ERVK 51 568 0 3 968 366 233 118 145 chr5 50266938 50267159 -102270100 - MER20 DNA MER1_type -2 217 3 3 968 194 341 61 23 chr5 50267279 50267411 -102269848 + MIRb SINE MIR 100 236 -32 3 968 345 306 80 35 chr5 50268475 50268535 -102268724 - MLT1D LTR MaLR -270 235 177 3 968 2219 94 154 14 chr5 50268535 50268892 -102268367 - MTB_Mm LTR MaLR 0 407 1 3 968 345 306 80 35 chr5 50268892 50269031 -102268228 - MLT1D LTR MaLR -329 176 27 3 968 4202 56 9 0 chr5 50269101 50269654 -102267605 - L1Md_F2 LINE L1 -93 5790 5233 3 968 5567 90 10 10 chr5 50269654 50270443 -102266816 + L1Md_F2 LINE L1 5792 6580 -2 3 968 638 294 39 35 chr5 50270511 50270797 -102266462 - B4A SINE B4 -5 287 1 3 968 2238 117 10 25 chr5 50272203 50272597 -102264662 + Lx2 LINE L1 6543 6930 -67 3 968 486 0 0 0 chr5 50272602 50272656 -102264603 + (TAAAA)n Simple_repeat Simple_repeat 5 58 0 3 968 345 317 42 26 chr5 50272834 50273025 -102264234 + L2a LINE L2 3209 3402 -24 3 968 790 313 97 17 chr5 50273223 50273574 -102263685 + MTEa LTR MaLR 1 379 0 3 968 227 235 135 58 chr5 50274034 50274138 -102263121 - MLT1A1 LTR MaLR -3 405 294 3 968 36 40 0 0 chr5 50276488 50276538 -102260721 + AT_rich Low_complexity Low_complexity 1 50 0 3 968 338 317 89 0 chr5 50277914 50278015 -102259244 + PB1D10 SINE Alu 1 110 -7 3 968 234 310 21 92 chr5 50279412 50279554 -102257705 + MIR SINE MIR 60 191 -71 3 968 2330 179 95 20 chr5 50279956 50280452 -102256807 + RMER5 LTR ERV1 1 533 -1 3 968 531 45 0 0 chr5 50280544 50280610 -102256649 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 968 1401 216 113 39 chr5 50280771 50280965 -102256294 + L1_Mur3 LINE L1 4033 4239 -1641 3 968 1882 191 18 36 chr5 50280965 50281350 -102255909 - ORR1C1 LTR MaLR 0 378 1 3 968 1401 216 113 39 chr5 50281350 50281722 -102255537 + L1_Mur3 LINE L1 4240 4641 -1239 3 968 426 114 0 0 chr5 50282102 50282172 -102255087 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 968 389 207 12 24 chr5 50284032 50284116 -102253143 + RMER1C Other Other 214 296 -1046 3 968 1797 252 10 42 chr5 50284431 50284929 -102252330 - RMER1C Other Other -149 1193 712 3 968 5151 220 28 54 chr5 50284941 50286265 -102250994 + Lx7 LINE L1 6407 7696 0 3 968 255 352 59 35 chr5 50286513 50286716 -102250543 - L2 LINE L2 -460 2959 2752 3 968 1151 212 0 17 chr5 50288489 50288719 -102248540 + URR1A DNA MER1_type 1 226 0 3 968 246 381 25 25 chr5 50288903 50289024 -102248235 - MLT1J-int LTR MaLR -1262 125 5 3 968 189 0 0 0 chr5 50289245 50289266 -102247993 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 968 3376 30 5 0 chr5 50290367 50290761 -102246498 - MTA_Mm LTR MaLR 0 396 1 3 968 1267 105 33 0 chr5 50290922 50291103 -102246156 - B2_Mm2 SINE B2 -6 189 3 3 968 21 0 0 0 chr5 50291204 50291225 -102246034 + AT_rich Low_complexity Low_complexity 1 21 0 3 968 438 334 144 22 chr5 50293906 50294351 -102242908 + MER34A1 LTR ERV1 12 510 -77 3 968 441 0 0 0 chr5 50294634 50294683 -102242576 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 968 407 319 41 41 chr5 50294908 50295055 -102242204 - MLT1A LTR MaLR -227 147 1 3 968 327 192 0 0 chr5 50295069 50295147 -102242112 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 968 316 83 82 14 chr5 50295573 50295646 -102241613 + Lx9 LINE L1 7567 7644 0 3 968 638 253 63 16 chr5 50296704 50296893 -102240366 - B3A SINE B2 0 198 1 3 968 258 354 23 23 chr5 50297786 50297916 -102239343 + Tigger16b DNA Tigger 205 334 -3 3 968 1080 67 0 0 chr5 50298058 50298192 -102239067 + B1_Mus1 SINE Alu 2 135 -13 3 968 243 0 0 0 chr5 50298194 50298221 -102239038 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 968 639 304 4 74 chr5 50298265 50298507 -102238752 + B4 SINE B4 2 226 -66 3 968 416 274 8 25 chr5 50299107 50299227 -102238032 + MLT1A1 LTR MaLR 291 408 0 3 968 322 276 0 22 chr5 50299319 50299408 -102237851 + MIR SINE MIR 35 121 -141 3 968 479 321 87 83 chr5 50300120 50300409 -102236850 + B4 SINE B4 3 292 0 3 968 213 225 0 0 chr5 50300414 50300454 -102236805 + (CATA)n Simple_repeat Simple_repeat 2 41 0 3 968 182 233 100 0 chr5 50300926 50300986 -102236273 + L3 LINE CR1 4099 4164 -325 4 968 236 277 62 0 chr5 50301734 50301799 -102235460 + ID4 SINE ID 1 69 -14 4 968 420 257 123 14 chr5 50303192 50303364 -102233895 + ORR1E LTR MaLR 5 186 -184 4 968 207 233 35 11 chr5 50303366 50303453 -102233806 + CT-rich Low_complexity Low_complexity 1 89 0 4 968 283 302 132 20 chr5 50303470 50303622 -102233637 + ORR1E LTR MaLR 211 379 0 4 968 21 0 0 0 chr5 50303775 50303796 -102233463 + AT_rich Low_complexity Low_complexity 1 21 0 4 968 974 257 30 63 chr5 50304248 50304551 -102232708 + RLTR18 LTR ERVK 15 307 -309 4 968 236 328 110 17 chr5 50304585 50304703 -102232556 + RLTR18B LTR ERVK 163 291 -221 4 968 1521 70 36 23 chr5 50304703 50304922 -102232337 - L1Md_F2 LINE L1 -1 6581 6360 4 968 4195 44 2 4 chr5 50304927 50305470 -102231789 - L1_Mm LINE L1 -88 5795 5254 4 968 529 308 10 46 chr5 50305470 50305664 -102231595 + RLTR18B LTR ERVK 307 493 -19 4 968 616 286 46 41 chr5 50306029 50306226 -102231033 - MIR SINE MIR -8 254 57 4 968 24 0 0 0 chr5 50306402 50306426 -102230833 + AT_rich Low_complexity Low_complexity 1 24 0 4 968 551 219 149 0 chr5 50306907 50307021 -102230238 - B1_Mur2 SINE Alu -7 142 12 4 968 518 285 216 10 chr5 50307621 50307806 -102229453 + B4 SINE B4 2 224 -68 4 968 213 132 0 0 chr5 50307806 50307844 -102229415 + (CAAAG)n Simple_repeat Simple_repeat 1 38 0 4 968 696 61 0 0 chr5 50307855 50307953 -102229306 + (CA)n Simple_repeat Simple_repeat 2 99 0 4 968 475 162 27 27 chr5 50308883 50309029 -102228230 + (TA)n Simple_repeat Simple_repeat 2 147 0 4 968 357 200 47 12 chr5 50309029 50309115 -102228144 - L1MA4 LINE L1 -60 6240 6152 4 968 237 253 45 11 chr5 50309109 50309197 -102228062 + L1MA4 LINE L1 6040 6130 -170 4 968 279 0 0 0 chr5 50309810 50309841 -102227418 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 968 3207 94 60 0 chr5 50309859 50310329 -102226930 - L1_Mus4 LINE L1 -2 6634 6137 4 968 252 298 74 30 chr5 50310500 50310635 -102226624 - MLT1A1 LTR MaLR 0 408 268 4 968 530 180 0 6 chr5 50310958 50311137 -102226122 + (TA)n Simple_repeat Simple_repeat 1 178 0 4 968 380 270 62 20 chr5 50311508 50311617 -102225642 - MTE2b LTR MaLR 0 379 267 4 968 1293 246 72 51 chr5 50312221 50312611 -102224648 - MTD LTR MaLR -17 402 5 4 968 236 321 76 76 chr5 50314006 50314151 -102223108 - MLT1J LTR MaLR -34 478 334 4 968 643 272 6 11 chr5 50314163 50314338 -102222921 + RMER30 DNA MER1_type 2 175 -27 4 968 180 0 0 0 chr5 50314372 50314392 -102222867 + (T)n Simple_repeat Simple_repeat 1 20 0 4 968 1134 78 0 0 chr5 50314412 50314553 -102222706 - B1_Mus1 SINE Alu -7 141 1 4 968 423 329 134 46 chr5 50314688 50315016 -102222243 - Arthur1B DNA Tip100 -389 836 480 4 968 242 335 211 26 chr5 50315027 50315217 -102222042 - LTR86A2 LTR ERVL -282 226 2 4 968 2256 170 33 47 chr5 50315327 50315752 -102221507 + MTC LTR MaLR 1 419 -2 4 968 443 323 125 17 chr5 50316098 50316385 -102220874 - MLT1J-int LTR MaLR -31 1378 1061 4 968 21 36 0 0 chr5 50316631 50316659 -102220600 + AT_rich Low_complexity Low_complexity 1 28 0 4 968 31496 110 23 29 chr5 50316906 50318398 -102218861 + L1Md_F3 LINE L1 232 1716 -4167 4 968 1848 76 4 30 chr5 50318398 50318669 -102218590 + L1Md_F2 LINE L1 6319 6582 0 4 968 31496 60 6 10 chr5 50318669 50322558 -102214701 + L1Md_F3 LINE L1 1717 5586 -297 4 968 8153 41 3 0 chr5 50322558 50323537 -102213722 + L1Md_F3 LINE L1 5587 6568 -16 4 968 535 293 138 79 chr5 50324539 50324880 -102212379 - MLT1B LTR MaLR -10 364 4 4 968 23 0 0 0 chr5 50325118 50325141 -102212118 + AT_rich Low_complexity Low_complexity 1 23 0 4 968 6672 46 1 5 chr5 50325343 50326217 -102211042 - L1Md_F2 LINE L1 0 6582 5712 4 968 239 367 39 48 chr5 50326252 50326355 -102210904 - LTR78 LTR ERV1 -637 667 566 4 968 204 40 0 0 chr5 50327283 50327308 -102209951 + (T)n Simple_repeat Simple_repeat 1 25 0 4 968 25 31 0 0 chr5 50327497 50327529 -102209730 + AT_rich Low_complexity Low_complexity 1 32 0 4 968 2212 158 126 0 chr5 50328075 50328677 -102208582 + L1_Mur2 LINE L1 901 1593 -4284 4 968 555 112 0 0 chr5 50328677 50328766 -102208493 + (CATA)n Simple_repeat Simple_repeat 2 90 0 4 968 2212 148 57 0 chr5 50328766 50328869 -102208390 + L1_Mur2 LINE L1 1594 1706 -4171 4 968 1432 67 21 0 chr5 50328855 50329049 -102208210 + L1Md_F2 LINE L1 5389 5586 -297 4 968 8059 54 0 1 chr5 50329049 50330107 -102207152 + L1Md_F2 LINE L1 5587 6582 0 4 968 1314 77 39 0 chr5 50330117 50330298 -102206961 + B2_Mm2 SINE B2 2 189 -6 4 968 756 210 41 23 chr5 50330315 50330534 -102206725 + L1_Mur2 LINE L1 1666 1888 -3989 4 968 4476 212 48 6 chr5 50330517 50331504 -102205755 + Lx5 LINE L1 6014 7041 -9 4 1 1961 219 46 0 chr5 50331577 50331970 -102205289 - MTD LTR MaLR -8 411 1 4 969 2013 104 46 0 chr5 50332504 50332811 -102204448 - ORR1A2 LTR MaLR -1 326 6 4 969 1594 304 86 62 chr5 50332861 50333609 -102203650 + Lx8 LINE L1 6407 7172 -301 4 969 520 246 41 71 chr5 50334043 50334240 -102203019 + B3A SINE B2 1 191 -7 4 969 198 150 0 0 chr5 50334551 50334591 -102202668 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 4 969 400 36 0 0 chr5 50334650 50334705 -102202554 - B1_Mus2 SINE Alu 0 147 93 4 969 1190 251 59 46 chr5 50334935 50335391 -102201868 + RCHARR1 DNA MER1_type 76 537 -437 4 969 318 323 0 31 chr5 50335391 50335519 -102201740 + B3 SINE B2 2 125 -91 4 969 330 301 19 19 chr5 50336596 50336701 -102200558 + B3 SINE B2 110 214 -2 4 969 988 251 109 25 chr5 50336708 50337112 -102200147 + RCHARR1 DNA MER1_type 523 960 -14 4 969 21 57 0 0 chr5 50337382 50337417 -102199842 + AT_rich Low_complexity Low_complexity 1 35 0 4 969 687 108 0 0 chr5 50339141 50339261 -102197998 + (TC)n Simple_repeat Simple_repeat 2 121 0 4 969 225 0 0 0 chr5 50339261 50339286 -102197973 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 969 223 208 38 0 chr5 50339311 50339364 -102197895 + ID4_ SINE ID 2 56 -27 4 969 277 290 101 103 chr5 50339390 50339825 -102197434 + L1M3 LINE L1 3673 4109 -2034 4 969 957 292 83 76 chr5 50339864 50340312 -102196947 - MT2A LTR ERVL -75 458 8 4 969 258 292 0 50 chr5 50340451 50340570 -102196689 + GA-rich Low_complexity Low_complexity 3 115 0 4 969 806 231 114 59 chr5 50340587 50340974 -102196285 + L1M3 LINE L1 4274 4681 -1459 4 969 426 271 33 55 chr5 50341393 50341538 -102195721 + B1F2 SINE Alu 1 142 -8 4 969 208 270 33 22 chr5 50341677 50341768 -102195491 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 4 969 553 297 47 8 chr5 50341868 50342113 -102195146 + L1M3 LINE L1 4941 5189 -957 4 969 234 353 12 0 chr5 50342126 50342211 -102195048 + PB1D10 SINE Alu 23 108 -9 4 969 937 248 5 19 chr5 50342250 50342464 -102194795 + B3 SINE B2 1 211 -5 4 969 2191 142 69 3 chr5 50342703 50343063 -102194196 + ORR1C2 LTR MaLR 1 384 0 4 969 964 227 128 6 chr5 50343919 50344238 -102193021 - ERVL-B4-int LTR ERVL -87 5627 5270 4 969 358 285 144 10 chr5 50344234 50344441 -102192818 - ERVL-B4-int LTR ERVL -538 5129 4871 4 969 320 222 82 41 chr5 50344462 50344584 -102192675 - ERVL-B4-int LTR ERVL -832 4882 4756 4 969 625 301 117 17 chr5 50344584 50344935 -102192324 + MLT1A0-int LTR MaLR 1337 1722 -13 4 969 285 307 106 14 chr5 50344944 50345086 -102192173 + MLT1A0 LTR MaLR 12 166 -199 4 969 308 322 45 39 chr5 50345406 50345584 -102191675 + MLT1J1 LTR MaLR 26 204 -240 4 969 630 0 0 0 chr5 50345649 50345719 -102191540 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 969 2767 116 110 2 chr5 50346657 50347131 -102190128 - ORR1A3-int LTR MaLR -1438 525 1 4 969 2099 123 28 0 chr5 50347131 50347448 -102189811 - ORR1A3 LTR MaLR 0 326 1 4 969 1173 317 84 19 chr5 50347794 50348262 -102188997 + Lx5 LINE L1 6518 7394 -66 4 969 463 326 38 8 chr5 50348381 50348514 -102188745 + RSINE1 SINE B4 3 139 -26 4 969 216 300 88 26 chr5 50349115 50349134 -102188125 + B1F SINE Alu 30 149 0 4 969 308 309 0 0 chr5 50349134 50349228 -102188031 + ID_B1 SINE B4 129 222 -2 4 969 286 225 86 7 chr5 50349229 50349368 -102187891 + ORR1B1-int LTR MaLR 605 754 -755 4 969 1038 51 0 7 chr5 50349269 50349407 -102187852 + B1_Mm SINE Alu 9 145 -2 4 969 640 297 35 25 chr5 50350419 50350616 -102186643 + ID_B1 SINE B4 11 209 -15 4 969 340 278 84 26 chr5 50350993 50351148 -102186111 - RSINE1 SINE B4 0 165 2 4 969 207 0 0 0 chr5 50355758 50355781 -102181478 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 969 528 288 45 0 chr5 50355866 50355998 -102181261 - B1F SINE Alu -11 138 1 4 969 201 94 0 0 chr5 50356811 50356843 -102180416 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 4 969 359 274 102 57 chr5 50357768 50358140 -102179119 + RMER10A LTR ERVL 29 417 -25 4 969 436 167 111 26 chr5 50358172 50358289 -102178970 - B1_Mur1 SINE Alu -6 144 17 4 969 251 269 73 44 chr5 50358289 50358308 -102178951 - ID_B1 SINE B4 -6 218 79 4 969 264 271 144 0 chr5 50360408 50360526 -102176733 + ORR1C2 LTR MaLR 224 358 -26 4 969 322 122 0 0 chr5 50360547 50360596 -102176663 - B1_Mur4 SINE Alu -66 84 36 4 969 354 223 35 0 chr5 50360935 50361033 -102176226 + L1MB1 LINE L1 5762 5869 -302 4 969 217 250 0 0 chr5 50361315 50361359 -102175900 - MIR SINE MIR -184 78 35 4 969 4723 89 3 2 chr5 50363343 50363984 -102173275 - L1_Mus4 LINE L1 -4 6632 5991 4 969 535 256 130 19 chr5 50364148 50364355 -102172904 - ORR1E LTR MaLR -50 309 80 4 969 1211 47 0 13 chr5 50365091 50365241 -102172018 + B1_Mus1 SINE Alu 1 148 0 4 969 234 0 0 0 chr5 50365829 50365855 -102171404 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 4 969 347 237 13 0 chr5 50366195 50366271 -102170988 - B1_Mur4 SINE Alu -20 130 54 4 969 561 263 123 25 chr5 50366265 50366468 -102170791 - B4A SINE B4 -63 229 7 4 969 1570 200 176 28 chr5 50367881 50368386 -102168873 + Lx9 LINE L1 7024 7603 -41 4 969 318 286 11 120 chr5 50368481 50368558 -102168701 - RSINE1 SINE B4 0 165 107 4 969 1146 69 0 0 chr5 50368558 50368703 -102168556 + B1_Mus2 SINE Alu 3 147 0 4 969 318 286 11 120 chr5 50368703 50368808 -102168451 - RSINE1 SINE B4 -59 106 3 4 969 342 0 0 0 chr5 50368917 50368955 -102168304 + (TAA)n Simple_repeat Simple_repeat 2 39 0 4 969 248 20 60 20 chr5 50370826 50370876 -102166383 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 969 1023 238 41 16 chr5 50372508 50372752 -102164507 + Lx6 LINE L1 6966 7215 -245 4 969 21 0 0 0 chr5 50373173 50373194 -102164065 + AT_rich Low_complexity Low_complexity 1 21 0 4 969 23 68 0 0 chr5 50374220 50374264 -102162995 + AT_rich Low_complexity Low_complexity 1 44 0 5 969 391 337 62 11 chr5 50375615 50375792 -102161467 + Tigger5 DNA MER2_type 59 244 -2162 5 969 3504 110 6 4 chr5 50376019 50376528 -102160731 - Lx2A1 LINE L1 -7 7001 6492 5 969 611 240 68 18 chr5 50377703 50377924 -102159335 + ORSL DNA Tip100 8 239 -36 5 969 2364 186 60 28 chr5 50378120 50378619 -102158640 + RMER1B Other Other 546 1060 -6 5 969 552 15 0 0 chr5 50378985 50379050 -102158209 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 969 280 296 12 0 chr5 50379179 50379260 -102157999 + ID2 SINE ID 2 83 0 5 969 579 288 132 7 chr5 50380115 50380402 -102156857 + MER44A DNA MER2_type 10 332 -7 5 969 304 248 57 49 chr5 50383238 50383361 -102153898 + RLTR42-int LTR ERVK 4315 4438 -1084 5 969 225 250 10 30 chr5 50384482 50384692 -102152567 + GA-rich Low_complexity Low_complexity 1 205 0 5 969 279 271 22 66 chr5 50385751 50385842 -102151417 - RSINE1 SINE B4 -64 101 15 5 969 468 0 0 0 chr5 50387611 50387663 -102149596 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 969 1240 75 0 11 chr5 50388534 50388709 -102148550 - L1Md_F2 LINE L1 -12 6570 6398 5 969 249 33 0 0 chr5 50390688 50390718 -102146541 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 969 677 115 10 0 chr5 50392563 50392667 -102144592 + B1_Mur1 SINE Alu 1 105 -44 5 969 259 213 32 16 chr5 50392748 50392810 -102144449 + Lx8 LINE L1 7403 7465 -8 5 969 206 250 0 16 chr5 50392941 50393002 -102144257 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 5 969 399 21 0 0 chr5 50393265 50393313 -102143946 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 5 969 772 220 19 61 chr5 50393583 50393796 -102143463 + B3 SINE B2 3 206 -10 5 969 334 333 54 61 chr5 50393863 50394010 -102143249 + RSINE1 SINE B4 19 164 -1 5 969 285 289 67 0 chr5 50394685 50394775 -102142484 + PB1D10 SINE Alu 1 96 -21 5 969 271 98 33 0 chr5 50394933 50394994 -102142265 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 969 256 310 95 0 chr5 50395080 50395196 -102142063 - MER119 DNA MER1_type -352 231 105 5 969 2769 104 2 7 chr5 50395269 50395674 -102141585 + Lx2 LINE L1 6594 6996 -1 5 969 327 232 72 12 chr5 50396253 50396336 -102140923 - L1ME1 LINE L1 -35 6144 6057 5 969 251 229 16 0 chr5 50396498 50396559 -102140700 + L1MEb LINE L1 114 175 -5895 5 969 230 299 15 0 chr5 50396701 50396768 -102140491 + ID4_ SINE ID 2 69 -14 5 969 255 273 45 11 chr5 50396919 50397008 -102140251 - MER58D DNA MER1_type -11 375 284 5 969 230 0 33 0 chr5 50397289 50397319 -102139940 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 969 264 273 82 54 chr5 50398615 50398762 -102138497 + MLT1A0 LTR MaLR 215 365 0 5 969 207 246 0 30 chr5 50398861 50398928 -102138331 + A-rich Low_complexity Low_complexity 6 70 0 5 969 244 190 25 0 chr5 50399021 50399100 -102138159 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 969 24 77 0 0 chr5 50399102 50399154 -102138105 + AT_rich Low_complexity Low_complexity 1 52 0 5 969 233 220 0 0 chr5 50399665 50399724 -102137535 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 969 261 311 54 0 chr5 50400148 50400222 -102137037 + ID4 SINE ID 3 80 -3 5 969 673 107 50 0 chr5 50401013 50401134 -102136125 - L1_Mus4 LINE L1 0 6636 6510 5 969 251 156 0 30 chr5 50403484 50403550 -102133709 + (CATATA)n Simple_repeat Simple_repeat 5 68 0 5 969 281 345 92 21 chr5 50405354 50405496 -102131763 - RSINE1 SINE B4 -13 152 1 5 969 353 306 36 0 chr5 50406705 50406816 -102130443 + MamRep1161 DNA TcMar 9 123 -834 5 969 5079 101 17 9 chr5 50408363 50409110 -102128149 + L1_Mus4 LINE L1 5884 6636 0 5 969 373 288 26 58 chr5 50409443 50409598 -102127661 - B4 SINE B4 -138 154 5 5 969 7975 29 0 23 chr5 50409751 50410703 -102126556 + L1Md_T LINE L1 5652 6581 -1 5 969 21 36 0 0 chr5 50410704 50410732 -102126527 + AT_rich Low_complexity Low_complexity 1 28 0 5 969 355 277 58 61 chr5 50411926 50412144 -102125115 + ORR1E LTR MaLR 1 204 -166 5 969 22 0 0 0 chr5 50413694 50413716 -102123543 + AT_rich Low_complexity Low_complexity 1 22 0 5 969 347 278 73 133 chr5 50413923 50414238 -102123021 + ORR1E LTR MaLR 6 301 -58 5 969 1367 268 28 8 chr5 50414269 50414627 -102122632 + ORR1D2 LTR MaLR 1 365 -5 5 969 198 0 0 0 chr5 50415250 50415272 -102121987 + (A)n Simple_repeat Simple_repeat 1 22 0 5 969 529 240 18 72 chr5 50417855 50418021 -102119238 - B3A SINE B2 -1 197 41 5 969 498 272 76 130 chr5 50420825 50420881 -102116378 + MTE2a LTR MaLR 9 58 -321 5 969 1646 138 174 31 chr5 50420881 50421202 -102116057 - ORR1B2 LTR MaLR 0 367 1 5 969 498 272 76 130 chr5 50421202 50421513 -102115746 + MTE2a LTR MaLR 59 356 -23 5 969 567 316 38 5 chr5 50422286 50422499 -102114760 + ID_B1 SINE B4 5 224 0 5 969 309 238 107 19 chr5 50424086 50424189 -102113070 + Kanga11a DNA Tc2 229 340 -630 5 969 189 121 0 0 chr5 50424632 50424665 -102112594 + (A)n Simple_repeat Simple_repeat 1 33 0 5 969 910 274 55 47 chr5 50428428 50428792 -102108467 + MER31B LTR ERV1 4 370 -96 5 969 328 190 203 17 chr5 50428890 50429008 -102108251 - MER58D DNA MER1_type -204 182 43 5 969 214 367 116 0 chr5 50429899 50430046 -102107213 - L2a LINE L2 -19 3407 3244 5 969 201 129 0 0 chr5 50430205 50430236 -102107023 + (GAA)n Simple_repeat Simple_repeat 3 33 0 5 969 319 217 41 124 chr5 50431092 50431213 -102106046 + B4A SINE B4 65 175 -117 5 969 320 198 191 92 chr5 50431574 50431747 -102105512 + B3A SINE B2 8 197 -1 5 969 208 307 122 14 chr5 50432075 50432214 -102105045 + MIR SINE MIR 18 171 -91 5 969 180 0 0 0 chr5 50432435 50432455 -102104804 + (GTTTG)n Simple_repeat Simple_repeat 5 24 0 5 969 929 166 77 0 chr5 50432503 50432684 -102104575 - B2_Mm2 SINE B2 0 195 1 5 969 732 245 40 54 chr5 50432687 50432911 -102104348 - ID_B1 SINE B4 -1 223 3 5 969 448 136 0 22 chr5 50432996 50433086 -102104173 + GA-rich Low_complexity Low_complexity 3 90 0 5 969 702 35 0 0 chr5 50433206 50433291 -102103968 + (TG)n Simple_repeat Simple_repeat 2 86 0 5 969 301 273 113 109 chr5 50434999 50435202 -102102057 + MLT2B2 LTR ERVL 251 511 -43 5 969 519 17 0 0 chr5 50435202 50435262 -102101997 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 969 266 281 174 20 chr5 50435262 50435293 -102101966 + MLT2B2 LTR ERVL 512 544 -10 5 969 354 245 56 19 chr5 50435539 50435647 -102101612 - RMER15 LTR ERVL -60 515 404 5 969 6750 8 0 1 chr5 50436831 50437579 -102099680 + L1Md_A LINE L1 4840 5586 -297 5 969 8837 16 7 0 chr5 50437579 50438568 -102098691 + L1Md_A LINE L1 5587 6582 0 5 969 390 101 0 0 chr5 50440575 50440644 -102096615 + (CATA)n Simple_repeat Simple_repeat 4 72 0 5 969 1199 101 31 16 chr5 50441624 50441815 -102095444 - B2_Mm2 SINE B2 0 195 2 5 969 23 68 0 0 chr5 50442570 50442614 -102094645 + AT_rich Low_complexity Low_complexity 1 44 0 5 969 401 158 120 57 chr5 50442744 50442919 -102094340 + RMER17C LTR ERVK 89 274 -136 5 969 233 289 0 78 chr5 50447173 50447263 -102089996 - ID4 SINE ID 0 83 1 5 969 252 317 72 97 chr5 50447312 50447777 -102089482 + MLT1D LTR MaLR 21 503 -2 5 969 25 0 0 0 chr5 50448086 50448111 -102089148 + AT_rich Low_complexity Low_complexity 1 25 0 5 969 204 125 0 0 chr5 50448633 50448665 -102088594 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 5 969 21 36 0 0 chr5 50449921 50449949 -102087310 + GC_rich Low_complexity Low_complexity 1 28 0 5 969 193 146 20 20 chr5 50449960 50450009 -102087250 + (CAG)n Simple_repeat Simple_repeat 1 49 0 5 969 29 70 0 0 chr5 50450057 50450114 -102087145 + GC_rich Low_complexity Low_complexity 1 57 0 5 969 359 322 132 62 chr5 50450789 50451228 -102086031 - MER115 DNA Tip100 0 693 228 5 969 756 147 177 64 chr5 50452622 50452825 -102084434 - URR1A DNA MER1_type 0 226 1 5 969 756 263 50 0 chr5 50453550 50453729 -102083530 + B3 SINE B2 5 192 -24 5 969 198 0 0 0 chr5 50453730 50453752 -102083507 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 5 969 663 275 48 68 chr5 50454990 50455197 -102082062 + B3A SINE B2 4 206 -10 5 969 180 77 0 0 chr5 50456265 50456291 -102080968 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 969 258 250 42 56 chr5 50456333 50456405 -102080854 - ID SINE ID -153 71 1 5 969 245 294 29 14 chr5 50456839 50456908 -102080351 - MIR3 SINE MIR -48 160 91 5 969 1224 289 8 64 chr5 50457551 50457943 -102079316 - ORR1D2 LTR MaLR 0 370 1 5 969 283 286 39 0 chr5 50459324 50459401 -102077858 + ID4 SINE ID 2 81 -2 5 969 1111 224 9 5 chr5 50459840 50460055 -102077204 + B3 SINE B2 1 216 0 5 969 333 361 32 93 chr5 50460097 50460513 -102076746 + L1MC4a LINE L1 5350 5745 -2137 5 969 1552 187 88 34 chr5 50460513 50460867 -102076392 - ORR1D1 LTR MaLR 0 374 2 5 969 333 361 32 93 chr5 50460867 50460975 -102076284 + L1MC4a LINE L1 5746 5842 -2040 5 969 315 104 0 0 chr5 50461448 50461496 -102075763 + (TTG)n Simple_repeat Simple_repeat 1 48 0 5 969 243 0 0 0 chr5 50461876 50461903 -102075356 + (CAT)n Simple_repeat Simple_repeat 3 29 0 5 969 442 221 7 7 chr5 50461962 50462099 -102075160 + (CA)n Simple_repeat Simple_repeat 2 138 0 5 969 228 232 11 58 chr5 50462122 50462310 -102074949 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 5 970 315 0 0 0 chr5 50463123 50463158 -102074101 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5 970 820 163 122 0 chr5 50463541 50463713 -102073546 - URR1A DNA MER1_type 0 226 34 5 970 225 0 0 0 chr5 50464709 50464734 -102072525 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 970 386 333 86 23 chr5 50464795 50465016 -102072243 - MER58B DNA MER1_type 0 341 107 6 970 433 329 20 27 chr5 50465095 50465242 -102072017 - RSINE1 SINE B4 -15 150 5 6 970 414 259 142 34 chr5 50466222 50466398 -102070861 - MLT1A LTR MaLR -5 369 175 6 970 749 41 10 0 chr5 50466437 50466534 -102070725 + (GA)n Simple_repeat Simple_repeat 1 98 0 6 970 363 308 107 8 chr5 50466575 50466706 -102070553 - MLT1A LTR MaLR -246 144 1 6 970 32661 96 16 14 chr5 50466857 50471342 -102065917 + L1Md_F2 LINE L1 217 4714 -1169 6 970 4126 76 4 0 chr5 50471342 50471843 -102065416 - RLTR1C LTR ERV1 0 503 1 6 970 32661 77 4 6 chr5 50471843 50472719 -102064540 + L1Md_F2 LINE L1 4715 5586 -297 6 970 8136 61 0 37 chr5 50472720 50473753 -102063506 + L1Md_F2 LINE L1 5588 6582 0 6 970 408 331 0 35 chr5 50474099 50474240 -102063019 + B1F SINE Alu 3 138 -11 6 970 525 331 7 7 chr5 50474291 50474434 -102062825 + RSINE1 SINE B4 4 146 -19 6 970 698 144 48 7 chr5 50474495 50474642 -102062617 + Lx9 LINE L1 7491 7643 -1 6 970 517 294 37 58 chr5 50474831 50475023 -102062236 + MER31-int LTR ERV1 711 899 -4037 6 970 474 65 0 0 chr5 50475023 50475085 -102062174 + (TA)n Simple_repeat Simple_repeat 1 62 0 6 970 517 294 37 58 chr5 50475085 50475134 -102062125 + MER31-int LTR ERV1 900 947 -3989 6 970 434 264 153 28 chr5 50475160 50475304 -102061955 + ORR1D2 LTR MaLR 126 287 -83 6 970 1680 165 76 38 chr5 50476288 50476556 -102060703 + MTC LTR MaLR 1 317 -104 6 970 1963 129 122 30 chr5 50476556 50476892 -102060367 - ORR1B2 LTR MaLR 0 367 1 6 970 1680 145 78 41 chr5 50476892 50476907 -102060352 + MTC LTR MaLR 318 332 -89 6 970 2113 154 25 129 chr5 50476907 50477347 -102059912 + ORR1B1 LTR MaLR 1 394 0 6 970 1680 145 78 41 chr5 50477347 50477386 -102059873 + MTC LTR MaLR 333 366 -55 6 970 541 264 181 33 chr5 50477516 50477759 -102059500 - RMER20B LTR ERVK -223 404 126 6 970 270 271 0 0 chr5 50477909 50477968 -102059291 + MTC LTR MaLR 363 421 0 6 970 266 283 40 74 chr5 50477968 50478114 -102059145 - LTR79 LTR ERVL -218 309 169 6 970 24 0 0 0 chr5 50478267 50478291 -102058968 + AT_rich Low_complexity Low_complexity 1 24 0 6 970 7211 48 11 0 chr5 50478292 50479178 -102058081 - L1Md_F3 LINE L1 0 6584 5689 6 970 260 208 11 115 chr5 50479227 50479320 -102057939 + B3A SINE B2 2 81 -114 6 970 195 100 0 0 chr5 50479365 50479395 -102057864 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 970 283 301 46 12 chr5 50479455 50479485 -102057774 + MT2B LTR ERVL 134 195 -389 6 970 322 224 149 0 chr5 50479485 50479552 -102057707 + B1_Mus2 SINE Alu 1 77 -70 6 970 283 301 46 12 chr5 50479552 50479581 -102057678 + MT2B LTR ERVL 196 261 -323 6 970 903 312 61 23 chr5 50479748 50480092 -102057167 - MTE2b LTR MaLR -20 359 3 6 970 239 392 0 0 chr5 50480253 50480332 -102056927 - L3 LINE CR1 -1463 3026 2948 6 970 312 27 0 0 chr5 50480478 50480515 -102056744 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 970 357 82 0 0 chr5 50480524 50480573 -102056686 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 970 273 57 0 0 chr5 50480565 50480600 -102056659 + (GGA)n Simple_repeat Simple_repeat 3 37 0 6 970 806 288 5 29 chr5 50481151 50481355 -102055904 - MamSINE1 SINE tRNA 0 290 92 6 970 258 380 88 18 chr5 50481635 50481852 -102055407 - L2a LINE L2 -101 3325 3094 6 970 1063 291 112 3 chr5 50481859 50482190 -102055069 - ORR1D2 LTR MaLR -3 367 1 6 970 330 355 42 26 chr5 50482292 50482483 -102054776 - L2a LINE L2 -456 2963 2770 6 970 260 324 28 28 chr5 50482490 50482633 -102054626 - MLT1E1A LTR MaLR 0 680 538 6 970 315 256 26 0 chr5 50482640 50482718 -102054541 + ID4 SINE ID 1 80 -3 6 970 365 322 90 17 chr5 50482846 50483023 -102054236 + MLT1A0 LTR MaLR 172 361 -4 6 970 526 341 135 45 chr5 50483227 50483605 -102053654 + MER70A LTR ERVL 53 464 -8 6 970 211 273 12 49 chr5 50483847 50483928 -102053331 + (CATATA)n Simple_repeat Simple_repeat 6 83 0 6 970 217 256 0 0 chr5 50483950 50483989 -102053270 - PB1D10 SINE Alu -68 49 11 6 970 1466 121 27 0 chr5 50484185 50484409 -102052850 + IAPLTR2b LTR ERVK 1 230 -97 6 970 258 56 0 0 chr5 50484570 50484606 -102052653 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 970 27464 132 19 34 chr5 50484846 50491198 -102046061 + L1_Mus3 LINE L1 395 6638 0 6 970 31 58 0 0 chr5 50491325 50491377 -102045882 + AT_rich Low_complexity Low_complexity 1 52 0 6 970 919 140 114 6 chr5 50491493 50491651 -102045608 - B2_Mm2 SINE B2 -19 176 2 6 970 950 266 193 24 chr5 50491830 50491855 -102045404 - L1MA6 LINE L1 -375 6161 6135 6 970 321 89 0 0 chr5 50491855 50491900 -102045359 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 970 950 270 178 23 chr5 50491900 50492519 -102044740 - L1MA6 LINE L1 -402 6134 5411 6 970 388 286 78 80 chr5 50492543 50492895 -102044364 - L1MA6 LINE L1 -2692 3687 3336 6 970 303 85 0 0 chr5 50492895 50492942 -102044317 + (TTAG)n Simple_repeat Simple_repeat 2 48 0 6 970 388 286 78 80 chr5 50492942 50493014 -102044245 - L1MA6 LINE L1 -3044 3335 3265 6 970 195 42 0 0 chr5 50493014 50493038 -102044221 + (T)n Simple_repeat Simple_repeat 1 24 0 6 970 6787 40 3 27 chr5 50493038 50494410 -102042849 - L1Md_A LINE L1 -4113 1770 439 6 970 1222 293 97 69 chr5 50494407 50495368 -102041891 - L1MA6 LINE L1 -3101 3278 2289 6 970 201 108 0 0 chr5 50495435 50495472 -102041787 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 6 970 7423 71 17 16 chr5 50495707 50496935 -102040324 - L1Md_F2 LINE L1 -1 6581 5352 6 970 5792 83 15 0 chr5 50496948 50497728 -102039531 - L1Md_F2 LINE L1 -877 5006 4215 6 970 7474 42 25 0 chr5 50497726 50498638 -102038621 - L1Md_F2 LINE L1 0 6582 5648 6 970 2591 86 3 6 chr5 50498636 50498997 -102038262 - L1_Mm LINE L1 -537 5346 4987 6 970 9181 3 0 0 chr5 50498995 50499991 -102037268 - L1Md_A LINE L1 0 6582 5587 6 970 38444 5 0 0 chr5 50500000 50505362 -102031897 - L1Md_A LINE L1 -306 5577 214 1 970 27022 91 3 6 chr5 50505363 50509682 -102027577 - L1Md_A LINE L1 -883 5000 434 2 970 272 322 109 38 chr5 50510346 50510530 -102026729 + MLT1K LTR MaLR 378 574 -21 3 970 369 322 59 37 chr5 50510831 50511018 -102026241 - MER76 LTR ERVL 0 691 501 4 970 2771 58 6 0 chr5 50511018 50511362 -102025897 - ORR1A0 LTR MaLR 0 346 1 5 970 334 333 162 40 chr5 50511377 50511649 -102025610 + ORR1E LTR MaLR 9 313 -46 6 970 3018 246 81 30 chr5 50511655 50512582 -102024677 + RCHARR1 DNA MER1_type 1 974 0 7 970 314 327 18 9 chr5 50512634 50512745 -102024514 - MER76 LTR ERVL -201 490 379 4 970 270 161 34 11 chr5 50513285 50513373 -102023886 + (CAGAGA)n Simple_repeat Simple_repeat 2 91 0 8 970 435 319 87 22 chr5 50513435 50513618 -102023641 - MER76 LTR ERVL -376 315 121 4 970 216 86 0 0 chr5 50513902 50513937 -102023322 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9 970 346 192 72 60 chr5 50514335 50514418 -102022841 - MER76 LTR ERVL -583 108 25 4 970 215 61 30 0 chr5 50514973 50515006 -102022253 + (TAA)n Simple_repeat Simple_repeat 1 34 0 1 970 25 31 0 0 chr5 50515197 50515229 -102022030 + AT_rich Low_complexity Low_complexity 1 32 0 1 970 1363 268 44 3 chr5 50515845 50516189 -102021070 + RLTR42-int LTR ERVK 456 813 -4709 1 970 484 291 52 113 chr5 50516688 50516998 -102020261 + B4A SINE B4 1 291 -1 1 970 470 174 50 0 chr5 50517212 50517333 -102019926 - Lx9 LINE L1 -1 7643 7517 1 970 408 125 0 0 chr5 50517340 50517404 -102019855 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 970 950 169 17 0 chr5 50517406 50517578 -102019681 + RMER15 LTR ERVL 378 552 -23 1 970 570 314 48 35 chr5 50518002 50518233 -102019026 - MLT1F1 LTR MaLR -306 263 30 1 970 1021 285 37 45 chr5 50518320 50518673 -102018586 - MLT1A0 LTR MaLR -15 350 1 1 970 1718 241 41 23 chr5 50519310 50519751 -102017508 + Lx6 LINE L1 7011 7459 -1 1 970 522 326 105 55 chr5 50519764 50520222 -102017037 + MLT1D LTR MaLR 25 505 0 2 970 984 72 6 50 chr5 50520895 50521056 -102016203 - L1Md_F2 LINE L1 0 6582 6429 2 970 1517 50 0 0 chr5 50521056 50521236 -102016023 + L1Md_F2 LINE L1 5989 6168 -414 2 970 319 296 70 0 chr5 50521434 50521549 -102015710 + L1M5 LINE L1 3861 3983 -2163 2 970 350 221 39 0 chr5 50521549 50521626 -102015633 - MLT1F2 LTR MaLR -60 500 421 2 970 730 263 25 9 chr5 50521901 50522092 -102015167 - MTE2a LTR MaLR 0 379 174 2 970 366 23 0 0 chr5 50522292 50522335 -102014924 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 970 405 0 0 0 chr5 50522335 50522379 -102014880 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 970 270 290 67 30 chr5 50522693 50522828 -102014431 - L1M4 LINE L1 -2191 3955 3816 2 970 565 307 16 0 chr5 50522835 50522962 -102014297 + RSINE1 SINE B4 13 141 -24 2 970 507 60 0 0 chr5 50522963 50523030 -102014229 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 970 715 290 43 5 chr5 50523278 50523486 -102013773 - MLT1C LTR MaLR 0 467 252 3 970 567 243 61 61 chr5 50523912 50524140 -102013119 - MLT1C LTR MaLR -207 260 33 3 970 499 287 39 0 chr5 50524250 50524379 -102012880 + ID_B1 SINE B4 91 224 0 3 970 5706 119 32 0 chr5 50524540 50525436 -102011823 + L1_Mm LINE L1 4139 5063 -820 3 970 652 308 14 5 chr5 50526416 50526625 -102010634 + B3 SINE B2 1 211 -5 3 970 23 33 0 0 chr5 50526757 50526787 -102010472 + AT_rich Low_complexity Low_complexity 1 30 0 3 970 28 0 0 0 chr5 50526898 50526926 -102010333 + AT_rich Low_complexity Low_complexity 1 28 0 3 970 272 311 12 112 chr5 50527132 50527302 -102009957 + MLT1B LTR MaLR 76 228 -162 3 970 220 89 101 0 chr5 50527530 50527609 -102009650 + (TA)n Simple_repeat Simple_repeat 1 87 0 3 970 471 18 0 0 chr5 50527633 50527689 -102009570 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 970 303 293 51 51 chr5 50527690 50527848 -102009411 + L1M5 LINE L1 2269 2426 -3720 4 970 326 276 73 172 chr5 50528671 50528744 -102008515 + MTD-int LTR MaLR 2 63 -1195 4 970 273 57 0 0 chr5 50528744 50528779 -102008480 + (CTTG)n Simple_repeat Simple_repeat 1 35 0 4 970 1176 268 136 125 chr5 50528779 50529505 -102007754 + MTD-int LTR MaLR 64 1044 -214 4 970 231 61 0 0 chr5 50529505 50529538 -102007721 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 4 970 1143 56 0 7 chr5 50529538 50529677 -102007582 - B1_Mus2 SINE Alu -4 143 5 4 970 1176 286 94 51 chr5 50529677 50529895 -102007364 + MTD-int LTR MaLR 1045 1253 -5 4 970 1165 272 41 41 chr5 50529899 50530317 -102006942 + MTD LTR MaLR 1 418 -1 4 970 244 290 60 72 chr5 50530654 50530821 -102006438 + L1ME1 LINE L1 6013 6177 -2 4 970 417 302 87 59 chr5 50531688 50531941 -102005318 - MER21B LTR ERV1 -107 756 497 4 970 12950 92 56 18 chr5 50531942 50534618 -102002641 - L1VL2 LINE L1 -762 2853 46 4 970 229 333 255 25 chr5 50534845 50535002 -102002257 - MER21B LTR ERV1 -619 244 52 4 970 24 0 0 0 chr5 50535559 50535583 -102001676 + AT_rich Low_complexity Low_complexity 1 24 0 4 970 245 317 0 58 chr5 50535583 50535670 -102001589 - ID4_ SINE ID 0 83 2 4 970 21 0 0 0 chr5 50536021 50536042 -102001217 + AT_rich Low_complexity Low_complexity 1 21 0 5 970 181 0 0 65 chr5 50536132 50536163 -102001096 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 5 970 206 324 15 0 chr5 50536163 50536231 -102001028 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 970 728 196 57 6 chr5 50536238 50536397 -102000862 - RLTR42 LTR ERVK -22 217 51 5 970 549 193 61 0 chr5 50536397 50536511 -102000748 + MurERV4_19-int LTR ERVK 4667 4787 -735 5 970 636 116 165 0 chr5 50536518 50536639 -102000620 + MurERV4_19-int LTR ERVK 5640 5780 0 5 970 3142 158 22 5 chr5 50536650 50537202 -102000057 + RLTR42-int LTR ERVK 4962 5522 0 5 970 1161 238 17 0 chr5 50537202 50537437 -101999822 + RLTR42 LTR ERVK 1 239 0 5 970 364 296 61 53 chr5 50537437 50537525 -101999734 - B4A SINE B4 -157 135 49 5 970 2430 185 39 14 chr5 50537525 50538039 -101999220 + RLTR24 LTR ERV1 3 529 0 5 970 364 296 61 53 chr5 50538039 50538082 -101999177 - B4A SINE B4 -244 48 3 5 970 23 68 0 0 chr5 50538638 50538682 -101998577 + AT_rich Low_complexity Low_complexity 1 44 0 5 970 436 195 25 8 chr5 50538992 50539111 -101998148 + L1MB3 LINE L1 6060 6180 -3 5 970 25 51 0 0 chr5 50539977 50540016 -101997243 + AT_rich Low_complexity Low_complexity 1 39 0 6 970 247 271 155 10 chr5 50540327 50540424 -101996835 + L1MC4 LINE L1 6892 7002 -1040 6 970 201 222 16 16 chr5 50540740 50540804 -101996455 + (TATAA)n Simple_repeat Simple_repeat 5 68 0 6 970 755 300 94 16 chr5 50540806 50541124 -101996135 - MER2 DNA MER2_type -2 343 1 6 970 510 288 164 0 chr5 50542408 50542554 -101994705 + B4A SINE B4 55 224 -68 6 970 551 222 64 25 chr5 50542537 50542694 -101994565 + RMER19A LTR ERVK 330 492 -245 6 970 288 212 138 23 chr5 50542692 50542779 -101994480 - RMER30 DNA MER1_type -80 122 26 6 970 503 325 31 73 chr5 50542746 50543005 -101994254 + Charlie12 DNA MER1_type 357 604 -2269 6 970 426 229 41 8 chr5 50543090 50543213 -101994046 + Charlie12 DNA MER1_type 624 750 -2123 6 970 1060 150 5 46 chr5 50543320 50543516 -101993743 - RMER19A LTR ERVK 0 737 550 6 970 428 185 76 0 chr5 50543545 50543664 -101993595 - Lx9 LINE L1 -1 7643 7516 6 970 297 215 0 12 chr5 50543992 50544072 -101993187 - Lx6 LINE L1 -4 7456 7378 7 970 251 214 257 0 chr5 50544072 50544142 -101993117 - PB1D10 SINE Alu -23 94 7 7 970 323 296 105 7 chr5 50544156 50544299 -101992960 - L1M5 LINE L1 -3093 3053 2897 7 970 238 261 15 0 chr5 50544675 50544740 -101992519 - L1M3 LINE L1 -599 5584 5519 7 970 241 311 39 118 chr5 50544907 50545111 -101992148 - MER53 DNA hAT 0 193 6 7 970 240 345 27 9 chr5 50546415 50546526 -101990733 + MIR SINE MIR 102 214 -48 7 970 332 370 55 8 chr5 50546811 50546939 -101990320 - MLT1H LTR MaLR -344 205 72 7 970 187 300 0 20 chr5 50546995 50547046 -101990213 + MIRb SINE MIR 219 268 0 7 970 270 0 0 0 chr5 50548443 50548473 -101988786 + (A)n Simple_repeat Simple_repeat 1 30 0 7 970 1148 300 54 41 chr5 50549094 50549816 -101987443 + L1MA4A LINE L1 5107 5901 -402 7 970 342 322 57 57 chr5 50550336 50550566 -101986693 - B4A SINE B4 -62 230 1 8 970 349 189 84 9 chr5 50552610 50552717 -101984542 - Lx6 LINE L1 -26 7434 7320 8 970 279 261 15 85 chr5 50552742 50552872 -101984387 + MT2B LTR ERVL 156 276 -325 8 970 690 194 8 0 chr5 50552761 50552885 -101984374 + B1_Mus2 SINE Alu 9 133 -14 8 970 255 61 0 0 chr5 50552885 50552918 -101984341 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 8 970 1362 267 6 6 chr5 50552926 50553250 -101984009 - Lx6 LINE L1 -192 7268 6945 8 970 813 291 204 42 chr5 50554146 50554601 -101982658 + MT2A LTR ERVL 3 531 -2 8 970 552 250 0 0 chr5 50555471 50555583 -101981676 + PB1D9 SINE Alu 1 112 -8 8 970 212 179 0 0 chr5 50555585 50555624 -101981635 + A-rich Low_complexity Low_complexity 1 39 0 8 970 778 286 11 0 chr5 50555624 50555806 -101981453 + B3 SINE B2 8 191 -25 8 970 24 0 0 0 chr5 50555809 50555833 -101981426 + AT_rich Low_complexity Low_complexity 1 24 0 8 970 22 56 0 0 chr5 50555899 50555935 -101981324 + AT_rich Low_complexity Low_complexity 1 36 0 9 970 1552 300 66 39 chr5 50556009 50556748 -101980511 - L1MA7 LINE L1 -20 6271 5513 9 970 218 357 12 0 chr5 50556847 50556931 -101980328 - ID_B1 SINE B4 -114 110 26 9 970 442 268 41 48 chr5 50556935 50557233 -101980026 - L1MA7 LINE L1 -803 5488 5182 9 970 310 195 32 56 chr5 50558113 50558238 -101979021 + (TATG)n Simple_repeat Simple_repeat 2 123 0 9 970 272 97 15 46 chr5 50558248 50558313 -101978946 + (TG)n Simple_repeat Simple_repeat 1 63 0 9 970 386 53 18 0 chr5 50558414 50558471 -101978788 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 970 245 359 7 14 chr5 50559907 50560051 -101977208 - MIR SINE MIR -24 238 96 9 970 522 317 104 8 chr5 50560085 50560336 -101976923 + B4A SINE B4 4 278 -14 9 970 224 381 0 0 chr5 50560511 50560595 -101976664 - MIRb SINE MIR -59 209 126 9 970 270 359 46 72 chr5 50561439 50561756 -101975503 - B4A SINE B4 -18 274 2 9 970 3454 267 43 25 chr5 50561893 50562917 -101974342 + Lx7 LINE L1 6309 7350 -346 1 970 215 73 49 0 chr5 50562956 50562997 -101974262 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 1 970 22 56 0 0 chr5 50563078 50563114 -101974145 + AT_rich Low_complexity Low_complexity 1 36 0 1 970 1164 271 53 17 chr5 50563616 50564029 -101973230 - Zaphod DNA Tip100 -9 4022 3595 1 970 273 333 32 11 chr5 50564053 50564147 -101973112 - MER58B DNA MER1_type -84 257 162 1 970 502 268 87 0 chr5 50564178 50564305 -101972954 - B1_Mur1 SINE Alu 0 149 12 1 970 269 315 116 54 chr5 50564316 50564850 -101972409 - Zaphod DNA Tip100 -3088 943 377 1 970 801 226 56 56 chr5 50564956 50565172 -101972087 - B3 SINE B2 0 216 1 1 970 597 166 0 0 chr5 50565631 50565776 -101971483 + (CA)n Simple_repeat Simple_repeat 2 146 0 1 970 337 104 0 0 chr5 50565778 50565826 -101971433 + HAL1-3A_ME LINE L1 1975 2022 -836 1 970 834 170 1 3 chr5 50565826 50566574 -101970685 + (CA)n Simple_repeat Simple_repeat 1 746 0 1 970 252 238 15 45 chr5 50566627 50566693 -101970566 - ID4 SINE ID -15 68 5 1 970 324 311 18 96 chr5 50566809 50566976 -101970283 - RSINE1 SINE B4 -1 164 11 1 970 276 312 18 0 chr5 50566976 50567088 -101970171 - L1M5 LINE L1 -856 5290 5177 1 970 926 293 75 35 chr5 50567654 50567882 -101969377 - MLT1A0 LTR MaLR -4 361 126 1 970 1044 277 62 38 chr5 50567882 50568250 -101969009 + MTE2a LTR MaLR 3 379 0 1 970 926 293 75 35 chr5 50568250 50568367 -101968892 - MLT1A0 LTR MaLR -240 125 2 1 970 477 0 0 0 chr5 50568367 50568420 -101968839 + (TAA)n Simple_repeat Simple_repeat 2 54 0 1 970 300 143 0 0 chr5 50569302 50569358 -101967901 + (A)n Simple_repeat Simple_repeat 1 56 0 1 970 408 67 0 48 chr5 50570873 50570936 -101966323 + B1_Mus1 SINE Alu 1 60 -88 1 970 351 164 0 0 chr5 50570936 50570991 -101966268 + (CAGAGA)n Simple_repeat Simple_repeat 5 59 0 1 970 238 223 93 37 chr5 50570992 50571030 -101966229 + RLTR25B LTR ERVK 397 480 -548 1 970 297 78 0 121 chr5 50571030 50571088 -101966171 + 4.5SRNA scRNA scRNA 40 90 -4 1 970 806 57 0 0 chr5 50571036 50571142 -101966117 + B1_Mm SINE Alu 42 147 0 1 970 238 223 93 37 chr5 50571088 50571099 -101966160 + RLTR25B LTR ERVK 481 509 -519 1 970 387 0 0 0 chr5 50571142 50571185 -101966074 + (A)n Simple_repeat Simple_repeat 1 43 0 1 970 656 217 20 20 chr5 50571196 50571342 -101965917 + B1_Mus2 SINE Alu 1 146 -1 1 970 280 240 13 51 chr5 50571409 50571488 -101965771 - ID4 SINE ID -3 80 5 1 970 290 354 59 47 chr5 50571849 50572104 -101965155 + MER31B LTR ERV1 118 375 -91 1 970 756 42 0 0 chr5 50572502 50572598 -101964661 + (CAAAC)n Simple_repeat Simple_repeat 2 97 0 1 970 807 285 102 74 chr5 50572999 50573420 -101963839 - MER89 LTR ERV1 -47 512 80 1 970 752 303 120 51 chr5 50573752 50574242 -101963017 - Lx8 LINE L1 -6 7467 6944 1 970 1360 310 47 28 chr5 50574240 50574747 -101962512 + Lx8 LINE L1 6354 6870 -603 1 970 283 373 25 16 chr5 50574753 50574998 -101962261 - MER45B DNA Tip100 -90 950 704 1 970 242 360 13 105 chr5 50575003 50575155 -101962104 + LTR88c LTR Genie? 633 770 -92 1 970 324 338 75 34 chr5 50575073 50575220 -101962039 + LTR88a LTR Gypsy 640 792 -24 1 970 1006 309 83 5 chr5 50575371 50575816 -101961443 - L1ME1 LINE L1 0 6179 5700 1 970 1274 260 25 22 chr5 50576014 50576333 -101960926 - MTE2b LTR MaLR -59 320 1 1 970 698 131 13 0 chr5 50576998 50577151 -101960108 + (TCTCTG)n Simple_repeat Simple_repeat 2 156 0 1 970 324 0 0 0 chr5 50577323 50577359 -101959900 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 970 188 293 136 17 chr5 50577426 50577544 -101959715 + MIR SINE MIR 119 250 -12 1 970 203 283 0 73 chr5 50578930 50579094 -101958165 + G-rich Low_complexity Low_complexity 5 156 0 1 970 214 279 45 102 chr5 50579926 50580014 -101957245 - RSINE1 SINE B4 -69 96 14 1 970 313 321 68 15 chr5 50580047 50580180 -101957079 - B4A SINE B4 -111 181 42 1 970 1235 74 0 0 chr5 50580209 50580357 -101956902 + B1_Mus1 SINE Alu 1 148 0 1 970 511 337 16 26 chr5 50580841 50581030 -101956229 - MER57E1 LTR ERV1 -175 197 11 1 970 1296 61 0 0 chr5 50581648 50581796 -101955463 + B1_Mus1 SINE Alu 1 148 0 1 970 329 45 59 15 chr5 50581805 50581873 -101955386 + (CAAA)n Simple_repeat Simple_repeat 3 73 0 1 970 242 120 19 39 chr5 50581878 50581930 -101955329 + A-rich Low_complexity Low_complexity 3 53 0 1 970 194 150 25 0 chr5 50582381 50582421 -101954838 + GA-rich Low_complexity Low_complexity 2 42 0 1 970 912 128 0 32 chr5 50582542 50582728 -101954531 + GA-rich Low_complexity Low_complexity 1 180 0 1 970 1825 242 115 13 chr5 50582943 50583411 -101953848 + RLTR24 LTR ERV1 14 529 0 1 970 1262 61 7 0 chr5 50583499 50583646 -101953613 + B1_Mus1 SINE Alu 1 148 0 1 970 222 37 0 0 chr5 50583646 50583673 -101953586 + (A)n Simple_repeat Simple_repeat 1 27 0 1 970 682 285 17 0 chr5 50583997 50584176 -101953083 - B3A SINE B2 -16 182 1 1 970 680 234 6 47 chr5 50584477 50584647 -101952612 - RLTR20A2 LTR ERVK 0 578 416 1 970 239 252 118 29 chr5 50584791 50584893 -101952366 + MER34A LTR ERV1 395 505 -66 1 970 300 175 193 0 chr5 50585599 50585656 -101951603 - ID4 SINE ID -14 69 2 1 970 293 343 19 19 chr5 50585671 50585778 -101951481 - PB1D10 SINE Alu -10 107 1 1 970 23 0 0 0 chr5 50585788 50585811 -101951448 + AT_rich Low_complexity Low_complexity 1 23 0 1 970 1160 216 19 0 chr5 50585811 50586019 -101951240 - B3 SINE B2 0 216 5 1 970 852 189 0 7 chr5 50586107 50586251 -101951008 - B1_Mur2 SINE Alu -5 144 2 1 970 24 0 0 0 chr5 50586251 50586275 -101950984 + AT_rich Low_complexity Low_complexity 1 24 0 1 970 459 0 0 0 chr5 50586520 50586571 -101950688 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 970 22 0 0 0 chr5 50586574 50586596 -101950663 + AT_rich Low_complexity Low_complexity 1 22 0 1 970 186 239 21 21 chr5 50586773 50586820 -101950439 - L4 LINE RTE -209 1820 1774 1 970 294 95 0 0 chr5 50589058 50589100 -101948159 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 1 970 867 199 21 31 chr5 50589105 50589297 -101947962 - B2_Mm2 SINE B2 -4 191 2 1 970 480 301 116 67 chr5 50589358 50589686 -101947573 + MLT1A0 LTR MaLR 3 346 -19 1 970 289 335 144 12 chr5 50589703 50589863 -101947396 - MER34A1 LTR ERV1 -23 519 339 1 970 295 260 65 76 chr5 50589903 50590140 -101947119 - MER34A1 LTR ERV1 -315 227 4 1 970 243 0 0 0 chr5 50591664 50591691 -101945568 + (A)n Simple_repeat Simple_repeat 1 27 0 1 970 513 200 47 12 chr5 50591796 50591912 -101945347 - RMER19B LTR ERVK -612 125 1 1 970 2580 102 3 6 chr5 50592207 50592553 -101944706 - L1_Mus2 LINE L1 -1 6565 6221 1 970 789 270 11 6 chr5 50593305 50593484 -101943775 + ID_B1 SINE B4 4 183 -41 1 971 302 158 18 0 chr5 50593876 50593933 -101943326 - MER96 DNA hAT -115 60 3 1 971 978 214 58 29 chr5 50594627 50594834 -101942425 - B3 SINE B2 -3 213 1 1 971 581 273 42 111 chr5 50594839 50595259 -101942000 + MTC LTR MaLR 6 404 -17 1 971 831 309 74 28 chr5 50595444 50595571 -101941688 - Tigger2b DNA MER2_type 0 726 600 1 971 417 86 0 0 chr5 50595571 50595629 -101941630 + (CAA)n Simple_repeat Simple_repeat 3 60 0 1 971 831 309 74 28 chr5 50595629 50595934 -101941325 - Tigger2b DNA MER2_type -127 599 274 1 971 1312 215 171 93 chr5 50595949 50596359 -101940900 + MT2A LTR ERVL 1 442 -91 1 971 408 264 75 40 chr5 50596395 50596569 -101940690 - Tigger2b DNA MER2_type -478 248 69 1 971 332 43 22 0 chr5 50596659 50596705 -101940554 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 971 399 250 0 11 chr5 50596818 50596911 -101940348 + MTD LTR MaLR 153 244 -175 1 971 263 167 21 0 chr5 50596932 50596980 -101940279 - MERVL-int LTR ERVL -978 4507 4459 1 971 353 261 57 43 chr5 50596987 50597127 -101940132 + MTD LTR MaLR 263 404 -15 1 971 831 309 74 28 chr5 50597310 50597437 -101939822 - Tigger2b DNA MER2_type 0 726 600 1 971 498 75 0 0 chr5 50597437 50597504 -101939755 + (CAA)n Simple_repeat Simple_repeat 3 69 0 1 971 831 309 74 28 chr5 50597504 50597809 -101939450 - Tigger2b DNA MER2_type -127 599 274 1 971 1312 215 171 93 chr5 50597824 50598234 -101939025 + MT2A LTR ERVL 1 442 -91 1 971 408 264 75 40 chr5 50598270 50598444 -101938815 - Tigger2b DNA MER2_type -478 248 69 1 971 314 45 23 0 chr5 50598534 50598578 -101938681 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 971 438 298 14 0 chr5 50599218 50599359 -101937900 - Charlie19a DNA Charlie -177 209 67 1 971 1220 116 42 11 chr5 50599579 50599770 -101937489 + RMER19B LTR ERVK 697 893 -9 1 971 236 176 0 38 chr5 50600267 50600320 -101936939 + Lx7 LINE L1 7637 7687 -9 1 971 21 36 0 0 chr5 50600326 50600354 -101936905 + AT_rich Low_complexity Low_complexity 1 28 0 1 971 250 300 0 12 chr5 50600390 50600471 -101936788 + MTEb LTR MaLR 11 90 -284 1 971 2466 84 16 16 chr5 50600497 50600862 -101936397 - Lx3_Mus LINE L1 -610 6399 6035 1 971 4426 100 38 0 chr5 50600873 50601369 -101935890 + Lx3_Mus LINE L1 6380 6889 -120 1 971 288 0 0 0 chr5 50601369 50601401 -101935858 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 1 971 4426 100 38 0 chr5 50601401 50601503 -101935756 + Lx3_Mus LINE L1 6890 7000 -9 1 971 413 245 102 32 chr5 50601540 50601743 -101935516 + MTEb LTR MaLR 139 368 -11 1 971 12843 64 0 1 chr5 50602094 50603705 -101933554 + L1Md_F2 LINE L1 4076 5684 -199 1 971 5952 47 37 0 chr5 50603707 50604409 -101932850 + L1Md_F2 LINE L1 5843 6570 -12 1 971 2122 314 66 50 chr5 50605064 50606472 -101930787 + Lx8 LINE L1 4469 5902 -1571 1 971 234 0 0 0 chr5 50607043 50607069 -101930190 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 971 314 300 22 0 chr5 50607087 50607177 -101930082 - B4A SINE B4 -18 274 183 1 971 1329 265 41 20 chr5 50609250 50609655 -101927604 - Lx6 LINE L1 -57 7403 6640 1 971 528 315 77 39 chr5 50609841 50610151 -101927108 + MLT1C LTR MaLR 93 414 -53 1 971 310 333 9 0 chr5 50610743 50610851 -101926408 + MIR SINE MIR 5 113 -149 1 971 369 315 81 0 chr5 50610935 50611046 -101926213 - B3 SINE B2 -96 120 1 1 971 643 260 206 30 chr5 50611057 50611319 -101925940 - MER57C2 LTR ERV1 0 434 127 1 971 380 326 25 30 chr5 50611343 50611542 -101925717 + Lx8 LINE L1 7071 7268 -205 1 971 366 23 0 0 chr5 50611579 50611622 -101925637 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 971 922 217 18 28 chr5 50612001 50612219 -101925040 - B3 SINE B2 0 216 1 2 971 4431 89 3 11 chr5 50612301 50612925 -101924334 - L1_Mus3 LINE L1 0 6638 6020 2 971 13439 138 13 15 chr5 50612930 50615397 -101921862 - L1VL4 LINE L1 -1483 4400 1939 2 971 2687 164 28 71 chr5 50615391 50616261 -101920998 - L1VL4 LINE L1 -2495 1419 609 2 971 913 258 14 5 chr5 50616615 50616829 -101920430 - B3 SINE B2 0 216 1 2 971 696 339 91 21 chr5 50617091 50617420 -101919839 - MER57D LTR ERV1 0 411 60 2 971 216 0 0 0 chr5 50617792 50617816 -101919443 + (T)n Simple_repeat Simple_repeat 1 24 0 2 971 1212 80 62 11 chr5 50618511 50618688 -101918571 + B2_Mm2 SINE B2 1 186 -9 2 971 1252 109 44 0 chr5 50618706 50618889 -101918370 + B2_Mm2 SINE B2 2 192 -3 2 971 404 356 77 45 chr5 50620448 50620610 -101916649 - ORR1E LTR MaLR -8 351 186 2 971 630 0 0 0 chr5 50620610 50620680 -101916579 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 971 404 356 77 45 chr5 50620680 50620829 -101916430 - ORR1E LTR MaLR -174 185 31 2 971 1095 94 0 0 chr5 50621941 50622121 -101915138 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 971 267 305 200 0 chr5 50622143 50622238 -101915021 - B1F SINE Alu -7 142 29 2 971 462 36 0 0 chr5 50622569 50622625 -101914634 + (TCTCTG)n Simple_repeat Simple_repeat 2 57 0 2 971 913 166 11 0 chr5 50623532 50623713 -101913546 - Lx2 LINE L1 -1 6996 6814 2 971 403 316 90 0 chr5 50625095 50625250 -101912009 + MIR SINE MIR 53 221 -41 2 971 227 352 61 14 chr5 50625362 50625509 -101911750 + L2c LINE L2 2930 3083 -304 2 971 200 283 0 48 chr5 50625763 50625801 -101911458 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 971 468 0 0 0 chr5 50625801 50625853 -101911406 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 971 200 283 0 48 chr5 50625853 50625877 -101911382 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 971 690 300 0 32 chr5 50625879 50626034 -101911225 - RSINE1 SINE B4 0 165 16 2 971 24 32 0 0 chr5 50626560 50626591 -101910668 + AT_rich Low_complexity Low_complexity 1 31 0 2 971 307 182 0 0 chr5 50629743 50629798 -101907461 + Lx6 LINE L1 7019 7073 -387 2 971 393 270 51 0 chr5 50629804 50629941 -101907318 + Lx6 LINE L1 7179 7322 -138 2 971 293 0 130 0 chr5 50629945 50630022 -101907237 + (TTTG)n Simple_repeat Simple_repeat 2 88 0 2 971 283 111 58 58 chr5 50630027 50630113 -101907146 + Lx6 LINE L1 7316 7401 -59 2 971 202 191 0 41 chr5 50630140 50630189 -101907070 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 2 971 466 253 0 0 chr5 50631286 50631381 -101905878 - B1_Mur2 SINE Alu -54 95 1 2 971 533 288 37 38 chr5 50631517 50631734 -101905525 + B4A SINE B4 1 261 -31 2 971 1134 75 7 0 chr5 50633333 50633480 -101903779 + B1_Mus1 SINE Alu 1 148 0 2 971 21 0 0 0 chr5 50633537 50633558 -101903701 + AT_rich Low_complexity Low_complexity 1 21 0 2 971 336 51 33 17 chr5 50634074 50634134 -101903125 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 971 926 76 8 0 chr5 50634608 50634740 -101902519 + (CAAAC)n Simple_repeat Simple_repeat 1 133 0 2 971 246 293 128 8 chr5 50635777 50635894 -101901365 + MIRb SINE MIR 23 153 -115 2 971 1043 269 141 6 chr5 50636460 50636793 -101900466 + MTEa LTR MaLR 2 379 0 2 971 605 119 0 10 chr5 50637368 50637470 -101899789 + (TCC)n Simple_repeat Simple_repeat 1 101 0 2 971 249 236 41 14 chr5 50637496 50637569 -101899690 + LTR33 LTR ERVL 441 515 0 2 971 410 335 115 59 chr5 50638030 50638106 -101899153 + MLT1B LTR MaLR 110 181 -286 2 971 364 340 0 14 chr5 50638106 50638252 -101899007 + B1F SINE Alu 1 144 -5 2 971 414 335 115 59 chr5 50638252 50638514 -101898745 + MLT1B LTR MaLR 182 467 0 2 971 592 327 233 16 chr5 50638744 50639057 -101898202 - MLT1B LTR MaLR 0 390 10 2 971 24409 32 6 8 chr5 50639379 50644487 -101892772 - L1Md_T LINE L1 0 6582 1 2 971 306 365 23 23 chr5 50645385 50645514 -101891745 - B4A SINE B4 0 292 164 2 971 220 340 9 62 chr5 50645497 50645526 -101891733 - B2_Mm1t SINE B2 -85 108 2 2 971 340 253 24 12 chr5 50645526 50645610 -101891649 - B4A SINE B4 -206 86 2 2 971 228 314 123 38 chr5 50645613 50645719 -101891540 - PB1D10 SINE Alu -1 116 2 2 971 477 0 0 0 chr5 50645823 50645876 -101891383 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 971 2921 119 158 0 chr5 50645877 50646415 -101890844 - Lx LINE L1 -16 6638 6016 2 971 2814 35 9 9 chr5 50646645 50646991 -101890268 - L1Md_F2 LINE L1 -1 6581 6236 2 971 450 0 0 0 chr5 50647057 50647107 -101890152 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 2 971 1126 43 21 7 chr5 50647109 50647250 -101890009 - B1_Mus1 SINE Alu -5 143 1 2 971 335 277 20 71 chr5 50648108 50648306 -101888953 - HAL1 LINE L1 -442 2065 1878 2 971 3213 92 43 0 chr5 50649543 50649988 -101887271 + Lx3_Mus LINE L1 6538 7001 -8 2 971 24 53 0 0 chr5 50649993 50650031 -101887228 + AT_rich Low_complexity Low_complexity 1 38 0 2 971 1133 253 67 35 chr5 50650050 50650394 -101886865 - ORR1D2 LTR MaLR -3 367 13 2 971 361 250 0 0 chr5 50650429 50650501 -101886758 - RSINE1 SINE B4 -69 96 25 2 971 240 282 114 13 chr5 50651110 50651189 -101886070 + MIRb SINE MIR 87 173 -95 2 971 429 326 103 54 chr5 50651596 50652024 -101885235 - L1ME3B LINE L1 -391 5849 5401 2 971 266 319 129 0 chr5 50652045 50652161 -101885098 + Tigger7 DNA MER2_type 2352 2482 -9 2 971 1288 56 6 0 chr5 50652382 50652560 -101884699 + L1_Mus1 LINE L1 5784 5962 -605 2 971 375 56 19 0 chr5 50652555 50652609 -101884650 - L1Md_F2 LINE L1 -1396 4487 4433 2 971 1174 100 0 55 chr5 50652594 50652663 -101884596 + L1Md_F2 LINE L1 4465 4533 -1350 2 971 435 48 0 0 chr5 50652663 50652725 -101884534 + L1Md_T LINE L1 6519 6580 -2 2 971 1174 100 0 55 chr5 50652725 50652856 -101884403 + L1Md_F2 LINE L1 4534 4654 -1229 2 971 3951 43 26 6 chr5 50652860 50653350 -101883909 - L1Md_F2 LINE L1 -1 6581 6082 2 971 16292 67 3 5 chr5 50653350 50655658 -101881601 - L1_Mm LINE L1 -1066 4817 2516 2 971 7195 54 2 1 chr5 50655657 50656609 -101880650 + L1Md_F2 LINE L1 4634 5586 -297 2 971 7589 67 1 4 chr5 50656610 50657591 -101879668 + L1Md_F2 LINE L1 5588 6565 -17 2 971 24 0 0 0 chr5 50657592 50657616 -101879643 + AT_rich Low_complexity Low_complexity 1 24 0 2 971 9035 71 11 16 chr5 50657616 50659377 -101877882 - L1Md_F LINE L1 -3349 2534 784 2 971 2530 113 96 31 chr5 50659377 50659823 -101877436 + IAPLTR2_Mm LTR ERVK 1 475 0 2 971 339 109 0 0 chr5 50659825 50659880 -101877379 + IAPEz-int LTR ERVK 3 57 -1930 2 971 3411 78 8 25 chr5 50659878 50660697 -101876562 + IAPEz-int LTR ERVK 10 662 -5819 2 971 2316 76 39 3 chr5 50660697 50661027 -101876232 + IAPEz-int LTR ERVK 1359 1700 -4781 2 971 6581 36 4 11 chr5 50661022 50661855 -101875404 + IAPEz-int LTR ERVK 5653 6479 -2 2 971 1304 221 14 14 chr5 50661855 50662236 -101875023 - L1Md_F LINE L1 -5908 816 217 2 971 3819 159 71 34 chr5 50662238 50663213 -101874046 - L1VL1 LINE L1 -2490 1208 190 2 971 34 0 0 0 chr5 50663222 50663256 -101874003 + AT_rich Low_complexity Low_complexity 1 34 0 2 971 1320 46 11 28 chr5 50663274 50663452 -101873807 - L1_Mus1 LINE L1 0 6567 6393 2 971 2074 66 0 0 chr5 50663453 50663727 -101873532 + L1_Mus1 LINE L1 6091 6364 -203 2 971 2663 155 8 2 chr5 50663726 50664229 -101873030 - L1_Mur3 LINE L1 -1454 4426 3921 2 971 207 0 0 0 chr5 50664231 50664254 -101873005 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2 971 6920 70 17 8 chr5 50664255 50665361 -101871898 - L1_Mus1 LINE L1 -10 6557 5456 2 971 9224 168 28 27 chr5 50665362 50667475 -101869784 - L1_Mur3 LINE L1 -1950 3930 1815 2 971 419 182 45 0 chr5 50667467 50667555 -101869704 - L1_Mur3 LINE L1 -4388 1492 1401 2 971 304 85 21 0 chr5 50667574 50667621 -101869638 - L1_Mur3 LINE L1 -6582 1146 1099 2 971 706 213 6 41 chr5 50667663 50667834 -101869425 - L1_Mur3 LINE L1 -6582 1146 982 2 971 582 271 55 53 chr5 50667835 50668141 -101869118 + RMER13B LTR ERVK 350 889 -19 2 971 239 311 18 72 chr5 50668155 50668266 -101868993 - L1_Mur3 LINE L1 -7073 655 551 2 971 529 314 39 41 chr5 50668644 50669112 -101868147 - L1MEc LINE L1 -3975 2425 1959 2 971 2226 130 48 0 chr5 50669764 50669835 -101867424 - Lx2 LINE L1 -1 6996 6911 2 971 189 0 0 0 chr5 50669835 50669856 -101867403 + (TCTCC)n Simple_repeat Simple_repeat 2 22 0 2 971 2226 130 48 0 chr5 50669856 50670139 -101867120 - Lx2 LINE L1 -87 6910 6626 2 971 748 309 122 82 chr5 50670139 50670587 -101866672 + MER63C DNA AcHobo 87 560 -370 2 971 4519 79 2 3 chr5 50670587 50671183 -101866076 + L1_Mus2 LINE L1 5971 6565 -1 2 971 748 309 122 82 chr5 50671183 50671457 -101865802 + MER63C DNA AcHobo 561 838 -92 2 971 182 118 0 29 chr5 50672419 50672454 -101864805 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 971 1171 227 14 0 chr5 50674335 50674551 -101862708 + MER58A DNA MER1_type 4 222 -2 2 971 471 53 26 13 chr5 50675561 50675637 -101861622 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 2 971 201 262 0 0 chr5 50675908 50675950 -101861309 - MIRb SINE MIR -16 252 211 2 971 2627 53 22 0 chr5 50676400 50676720 -101860539 + IAPLTR2b LTR ERVK 1 327 0 2 971 32404 32 0 0 chr5 50676865 50681618 -101855641 - L1Md_T LINE L1 0 6582 1829 2 971 963 9 0 0 chr5 50681618 50681724 -101855535 - U6 snRNA snRNA 0 107 2 2 971 360 64 0 0 chr5 50681815 50681862 -101855397 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 971 726 272 46 68 chr5 50681869 50682149 -101855110 - B4 SINE B4 -18 274 1 2 971 590 120 27 54 chr5 50682653 50682838 -101854421 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 2 971 857 296 103 28 chr5 50683251 50683717 -101853542 + MLT1D LTR MaLR 5 505 0 2 971 902 208 14 0 chr5 50683850 50684145 -101853114 + CT-rich Low_complexity Low_complexity 1 299 0 2 971 830 173 206 6 chr5 50684799 50684979 -101852280 + B3 SINE B2 1 216 0 2 971 272 317 76 9 chr5 50685199 50685304 -101851955 - MIR SINE MIR -64 198 87 2 971 259 312 0 0 chr5 50685355 50685419 -101851840 + ID4_ SINE ID 4 67 -16 2 971 396 0 0 0 chr5 50685424 50685468 -101851791 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 971 201 175 0 0 chr5 50685978 50686018 -101851241 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 971 440 329 129 81 chr5 50686412 50686769 -101850490 - MLT1E2 LTR MaLR -245 382 9 2 971 1095 271 65 46 chr5 50687070 50687441 -101849818 + MER89 LTR ERV1 179 556 -3 2 971 21 0 0 0 chr5 50687544 50687565 -101849694 + AT_rich Low_complexity Low_complexity 1 21 0 2 971 349 296 121 18 chr5 50687578 50687743 -101849516 - MIR SINE MIR -16 246 65 2 971 646 176 142 0 chr5 50687885 50688033 -101849226 - B2_Mm2 SINE B2 -23 172 4 2 971 192 97 0 0 chr5 50691496 50691527 -101845732 + (ATG)n Simple_repeat Simple_repeat 1 31 0 2 971 646 12 24 0 chr5 50691989 50692072 -101845187 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 971 344 288 184 101 chr5 50692231 50692579 -101844680 - MTEa LTR MaLR -2 377 1 3 971 279 382 65 11 chr5 50692980 50693165 -101844094 + Tigger5 DNA MER2_type 26 220 -2186 3 971 394 314 17 0 chr5 50693481 50693599 -101843660 - ID_B1 SINE B4 -5 219 100 3 971 224 327 71 26 chr5 50694244 50694357 -101842902 - MIRb SINE MIR -52 216 99 3 971 258 207 0 0 chr5 50695011 50695069 -101842190 + GA-rich Low_complexity Low_complexity 1 58 0 3 971 234 365 89 30 chr5 50695181 50695384 -101841875 + MIR SINE MIR 48 262 0 3 971 1313 184 116 59 chr5 50695442 50695846 -101841413 + Lx9 LINE L1 7210 7636 -8 3 971 490 237 105 0 chr5 50695874 50695988 -101841271 + RSINE1 SINE B4 3 128 -37 3 971 1553 155 45 102 chr5 50696073 50696425 -101840834 - ORR1B1 LTR MaLR -22 372 41 3 971 301 305 47 9 chr5 50697146 50697252 -101840007 - PB1D10 SINE Alu -7 110 1 3 971 415 214 59 24 chr5 50697499 50697644 -101839615 - L1MA4A LINE L1 -397 5906 5684 3 971 206 341 35 12 chr5 50697834 50697920 -101839339 + L2b LINE L2 3280 3367 -8 3 971 846 289 102 41 chr5 50698889 50699361 -101837898 - L1MA8 LINE L1 -19 6272 5752 3 971 788 255 23 33 chr5 50699361 50699576 -101837683 - B3 SINE B2 -3 213 1 3 971 846 289 102 41 chr5 50699576 50699741 -101837518 - L1MA8 LINE L1 -540 5751 5596 3 971 188 250 89 67 chr5 50699804 50699894 -101837365 + MIRc SINE MIR 88 179 -89 3 971 234 296 25 0 chr5 50700003 50700084 -101837175 + RLTR22_Mur LTR ERVK 1383 1465 -383 3 971 1074 293 39 14 chr5 50700056 50700340 -101836919 - B4A SINE B4 0 292 2 3 971 238 251 94 90 chr5 50700595 50700818 -101836441 - RLTR21 LTR ERVK -267 1305 1082 3 971 760 272 0 34 chr5 50701243 50701418 -101835841 - B3 SINE B2 -44 172 4 3 971 3306 43 5 0 chr5 50702503 50702897 -101834362 + MTA_Mm LTR MaLR 1 396 0 3 971 271 351 25 49 chr5 50702964 50703025 -101834234 - ID_B1 SINE B4 -2 222 123 3 971 272 328 0 15 chr5 50703025 50703093 -101834166 - PB1D10 SINE Alu -30 87 21 3 971 271 351 25 49 chr5 50703093 50703126 -101834133 - ID_B1 SINE B4 -2 122 65 3 971 222 250 57 19 chr5 50703176 50703229 -101834030 + MIR3 SINE MIR 106 160 -48 3 971 36310 31 1 0 chr5 50703386 50710497 -101826762 - L1Md_T LINE L1 0 6585 1 3 971 2792 192 18 92 chr5 50711464 50712306 -101824953 + RMER6C LTR ERVK 20 713 -7 3 971 650 283 76 25 chr5 50712845 50713121 -101824138 + B4A SINE B4 3 292 0 3 971 531 0 0 0 chr5 50713186 50713245 -101824014 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 971 405 0 0 0 chr5 50713245 50713289 -101823970 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 971 196 309 284 6 chr5 50713483 50713652 -101823607 + MIRb SINE MIR 47 262 -6 3 971 765 216 131 18 chr5 50713668 50713942 -101823317 + Tigger14a DNA MER2_type 15 319 -5 3 971 1846 168 6 55 chr5 50714348 50714694 -101822565 - ORR1A4 LTR MaLR 0 329 1 3 971 1179 189 4 17 chr5 50714694 50714925 -101822334 - ORR1A4-int LTR MaLR 0 1963 1736 3 971 1993 167 21 29 chr5 50714926 50715308 -101821951 - ORR1A4-int LTR MaLR -1584 379 1 3 971 1940 159 9 58 chr5 50715308 50715654 -101821605 - ORR1A4 LTR MaLR 0 329 1 3 971 305 98 0 0 chr5 50716329 50716370 -101820889 + ID SINE ID 3 43 -181 3 971 335 326 167 40 chr5 50716456 50716654 -101820605 + Charlie15a DNA MER1_type 2 224 0 3 971 510 17 0 0 chr5 50716756 50716815 -101820444 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 971 807 11 0 0 chr5 50716815 50716906 -101820353 + (GA)n Simple_repeat Simple_repeat 2 93 0 3 971 370 351 44 12 chr5 50717081 50717298 -101819961 - L1ME3B LINE L1 -275 5899 5672 3 971 606 272 131 0 chr5 50717579 50717770 -101819489 + ID_B1 SINE B4 2 217 -7 3 971 1289 269 24 55 chr5 50718251 50718331 -101818928 - ORR1D2 LTR MaLR 0 370 299 3 971 3561 42 0 0 chr5 50718331 50718755 -101818504 - L1Md_T LINE L1 0 6582 6159 3 971 1289 269 24 55 chr5 50718755 50719055 -101818204 - ORR1D2 LTR MaLR -72 298 4 3 971 366 296 69 14 chr5 50719145 50719289 -101817970 + L3 LINE CR1 3504 3655 -834 3 971 817 232 38 76 chr5 50719532 50719742 -101817517 - ORR1D2 LTR MaLR 0 370 169 3 971 359 21 21 0 chr5 50719907 50719955 -101817304 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 971 467 372 14 9 chr5 50720201 50720418 -101816841 + L3 LINE CR1 4203 4420 -69 3 971 211 342 49 37 chr5 50720451 50720533 -101816726 - L2c LINE L2 -3 3384 3302 3 971 279 0 0 0 chr5 50721341 50721372 -101815887 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 971 597 85 0 12 chr5 50721375 50721452 -101815807 - B1_Mm SINE Alu -6 141 65 3 971 4592 32 2 0 chr5 50721452 50721987 -101815272 + L1Md_T LINE L1 6047 6582 0 3 971 22 0 0 0 chr5 50722055 50722077 -101815182 + AT_rich Low_complexity Low_complexity 1 22 0 3 971 222 36 0 0 chr5 50722077 50722105 -101815154 - B1_Mus1 SINE Alu -83 65 38 3 971 472 319 57 0 chr5 50722178 50722319 -101814940 - RSINE1 SINE B4 -15 150 2 3 971 498 61 0 0 chr5 50722584 50722650 -101814609 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 971 718 331 40 18 chr5 50722669 50722946 -101814313 - B4A SINE B4 -4 288 6 3 971 689 244 17 11 chr5 50723115 50723289 -101813970 - MER5B DNA MER1_type -3 175 1 3 971 387 0 0 0 chr5 50723636 50723679 -101813580 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 972 225 344 0 0 chr5 50725153 50725243 -101812016 + (TATG)n Simple_repeat Simple_repeat 3 92 0 3 972 520 306 8 0 chr5 50725417 50725541 -101811718 - B4A SINE B4 -72 220 96 3 972 196 316 0 34 chr5 50726237 50726296 -101810963 - MIR3 SINE MIR -27 181 125 3 972 261 325 123 49 chr5 50726388 50726631 -101810628 + MIRb SINE MIR 1 261 -1 3 972 3285 101 17 4 chr5 50726925 50727393 -101809866 - Lx3A LINE L1 -4 6977 6504 3 972 13103 93 41 6 chr5 50727478 50729989 -101807270 - L1VL2 LINE L1 -628 2987 363 3 972 264 40 60 0 chr5 50729989 50730039 -101807220 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 3 972 3676 124 127 21 chr5 50730039 50730053 -101807206 - L1VL2 LINE L1 -5973 362 354 3 972 1457 117 0 80 chr5 50730053 50730304 -101806955 - L1_Mus2 LINE L1 -13 6553 6323 3 972 3676 124 127 21 chr5 50730304 50730409 -101806850 - L1VL2 LINE L1 -5982 353 245 3 972 356 178 96 0 chr5 50730410 50730483 -101806776 - L1VL2 LINE L1 -6244 91 12 3 972 594 280 40 35 chr5 50730601 50730801 -101806458 + B3 SINE B2 13 213 -3 3 972 22 0 0 0 chr5 50731123 50731145 -101806114 + AT_rich Low_complexity Low_complexity 1 22 0 3 972 197 360 19 117 chr5 50731585 50731739 -101805520 - L4 LINE RTE -172 1857 1719 3 972 265 145 16 16 chr5 50731747 50731810 -101805449 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 972 615 108 0 0 chr5 50734121 50734223 -101803036 + (GA)n Simple_repeat Simple_repeat 2 103 0 3 972 266 280 11 11 chr5 50734792 50734886 -101802373 + CT-rich Low_complexity Low_complexity 2 95 0 3 972 1522 0 9 0 chr5 50735699 50735932 -101801327 + (TTC)n Simple_repeat Simple_repeat 1 235 0 3 972 620 305 0 24 chr5 50736229 50736397 -101800862 + ID_B1 SINE B4 54 217 -7 3 972 267 173 0 0 chr5 50736474 50736526 -101800733 + (TCTG)n Simple_repeat Simple_repeat 1 52 0 3 972 8377 11 1 0 chr5 50736677 50737862 -101799397 - L1Md_A LINE L1 -1 6581 5396 3 972 30270 91 30 5 chr5 50738505 50744540 -101792719 - L1Md_F2 LINE L1 -3 6579 392 3 972 227 288 0 14 chr5 50744699 50744773 -101792486 - B1F1 SINE Alu -3 146 74 3 972 1028 164 11 0 chr5 50745965 50746142 -101791117 - URR1A DNA MER1_type 0 226 48 3 972 454 245 89 35 chr5 50745966 50746169 -101791090 + CYRA11_Mm Unknown Y-chromosome 172 385 -232 3 972 813 248 14 5 chr5 50746533 50746740 -101790519 - Lx8 LINE L1 -262 7211 7003 3 972 1695 281 172 4 chr5 50747474 50748298 -101788961 + Lx8 LINE L1 6189 7151 -322 3 972 783 327 67 35 chr5 50748403 50748717 -101788542 + MT2A LTR ERVL 100 423 -110 3 972 284 391 9 0 chr5 50748721 50748836 -101788423 + MT2A LTR ERVL 345 460 -73 3 972 795 50 0 0 chr5 50748844 50748944 -101788315 + (TC)n Simple_repeat Simple_repeat 1 100 0 3 972 180 0 0 0 chr5 50748944 50748963 -101788296 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 972 377 335 129 66 chr5 50749154 50749486 -101787773 + L2 LINE L2 2724 3076 -343 3 972 251 93 23 0 chr5 50749770 50749813 -101787446 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 3 972 336 127 0 0 chr5 50750643 50750698 -101786561 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 972 506 75 0 12 chr5 50750781 50750862 -101786397 + (GAAAA)n Simple_repeat Simple_repeat 2 81 0 3 972 469 239 0 0 chr5 50751465 50751599 -101785660 + Lx9 LINE L1 7489 7622 -22 3 972 713 148 61 12 chr5 50751600 50751764 -101785495 + Lx3_Mus LINE L1 6837 7008 -1 3 972 207 0 0 0 chr5 50751834 50751857 -101785402 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3 972 533 232 88 18 chr5 50751857 50751971 -101785288 - B1_Mur1 SINE Alu -7 142 21 3 972 4391 134 1 1 chr5 50752077 50752819 -101784440 + L1_Mur2 LINE L1 3999 4740 -1137 3 972 4786 157 28 27 chr5 50752831 50754265 -101782994 + L1VL2 LINE L1 22 1392 -2306 3 972 3661 115 18 0 chr5 50754270 50754836 -101782423 + L1_Mus3 LINE L1 517 1092 -5524 3 972 409 0 98 0 chr5 50754836 50754897 -101782362 + (TTATA)n Simple_repeat Simple_repeat 4 70 0 3 972 12170 142 9 56 chr5 50754902 50758289 -101778970 + L1_Mus3 LINE L1 3431 6637 -1 3 972 5326 181 13 57 chr5 50758298 50758863 -101778396 + Lx LINE L1 4732 5292 -591 3 972 2316 108 14 6 chr5 50758863 50759217 -101778042 + L1_Mus3 LINE L1 6282 6638 0 3 972 5927 158 34 18 chr5 50759217 50760594 -101776665 + Lx LINE L1 5293 6649 -5 3 972 753 326 94 12 chr5 50760696 50761025 -101776234 - ORR1E LTR MaLR 0 359 4 3 972 267 190 86 0 chr5 50761100 50761158 -101776101 - MIR SINE MIR -88 174 112 3 972 746 156 98 24 chr5 50761866 50762030 -101775229 - B2_Mm2 SINE B2 -14 181 6 3 972 8264 185 11 100 chr5 50762087 50763619 -101773640 - L1VL4 LINE L1 -2541 3336 2000 3 972 1144 76 0 0 chr5 50763619 50763763 -101773496 - B1_Mus1 SINE Alu -4 144 1 4 972 8264 186 15 93 chr5 50763763 50764646 -101772613 - L1VL4 LINE L1 -3878 1999 1108 3 972 362 38 0 19 chr5 50764646 50764699 -101772560 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 4 972 2073 196 66 16 chr5 50764699 50765066 -101772193 - L1VL4 LINE L1 -5550 1107 740 3 972 221 157 19 38 chr5 50765154 50765207 -101772052 + G-rich Low_complexity Low_complexity 3 54 0 4 972 262 171 0 0 chr5 50765209 50765272 -101771987 - L1VL2 LINE L1 -5843 492 443 4 972 532 297 64 42 chr5 50765339 50765692 -101771567 + MLT2B4 LTR ERVL 9 353 -61 4 972 964 295 53 55 chr5 50765746 50765960 -101771299 + Lx9 LINE L1 6896 7239 -405 4 972 1023 134 0 31 chr5 50765960 50766152 -101771107 + Lx LINE L1 6469 6654 0 4 972 964 278 61 58 chr5 50766152 50766551 -101770708 + Lx9 LINE L1 7240 7643 -1 4 972 210 328 100 39 chr5 50766659 50766789 -101770470 + L2c LINE L2 3243 3380 -7 4 972 394 335 19 6 chr5 50766914 50767076 -101770183 + MIR SINE MIR 87 250 -12 4 972 564 65 0 0 chr5 50767402 50767479 -101769780 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 972 255 198 29 19 chr5 50767892 50767995 -101769264 + GA-rich Low_complexity Low_complexity 4 107 0 4 972 426 69 0 0 chr5 50768023 50768081 -101769178 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 972 190 386 0 0 chr5 50768489 50768546 -101768713 + L2b LINE L2 3315 3371 -4 4 972 2246 26 15 0 chr5 50770357 50770627 -101766632 - L1Md_F3 LINE L1 -15 6569 6296 4 972 218 331 5 27 chr5 50771295 50771406 -101765853 + CT-rich Low_complexity Low_complexity 1 108 0 4 972 227 146 18 0 chr5 50772084 50772139 -101765120 + (TTG)n Simple_repeat Simple_repeat 2 57 0 4 972 362 374 118 47 chr5 50772374 50772859 -101764400 + L2 LINE L2 2558 3076 -343 4 972 663 253 141 18 chr5 50773370 50773628 -101763631 - ORR1E LTR MaLR -14 356 53 4 972 335 325 16 71 chr5 50773845 50774020 -101763239 + MIR SINE MIR 43 215 -53 4 972 367 302 54 0 chr5 50774601 50774730 -101762529 - MIR SINE MIR -16 246 111 4 972 21 0 0 0 chr5 50775080 50775101 -101762158 + AT_rich Low_complexity Low_complexity 1 21 0 4 972 702 0 0 0 chr5 50775522 50775600 -101761659 + (GA)n Simple_repeat Simple_repeat 2 79 0 4 972 671 263 9 26 chr5 50775669 50775873 -101761386 - MLT1C LTR MaLR -6 499 259 4 972 246 178 0 0 chr5 50776363 50776408 -101760851 + MTEa LTR MaLR 1 45 -334 4 972 1105 229 37 46 chr5 50776541 50776993 -101760266 - L1_Rod LINE L1 -4234 1613 1168 4 972 1376 205 47 11 chr5 50777059 50777478 -101759781 + Lx9 LINE L1 5545 6025 -1619 4 972 1895 177 46 24 chr5 50777516 50777928 -101759331 + MTC LTR MaLR 1 421 0 4 972 2157 263 51 3 chr5 50777941 50778586 -101758673 - Lx9 LINE L1 -663 6981 6306 4 972 504 32 0 0 chr5 50778717 50778779 -101758480 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 972 300 53 0 0 chr5 50778791 50778829 -101758430 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 972 396 0 0 0 chr5 50779670 50779714 -101757545 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 972 297 155 0 0 chr5 50779716 50779774 -101757485 + A-rich Low_complexity Low_complexity 1 58 0 4 972 740 301 44 31 chr5 50780547 50780666 -101756593 - Lx8 LINE L1 0 7473 7360 4 972 270 0 0 0 chr5 50780675 50780705 -101756554 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 4 972 539 226 251 18 chr5 50780705 50780866 -101756393 - B3 SINE B2 -14 202 1 4 972 740 301 44 31 chr5 50780866 50781106 -101756153 - Lx8 LINE L1 -114 7359 7109 4 972 841 339 30 24 chr5 50781193 50781531 -101755728 + MLT1A0 LTR MaLR 18 357 -8 4 972 459 0 0 0 chr5 50781806 50781857 -101755402 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 972 267 360 0 20 chr5 50781974 50782076 -101755183 - B1F1 SINE Alu -46 103 4 4 972 22 35 0 0 chr5 50783127 50783156 -101754103 + AT_rich Low_complexity Low_complexity 1 29 0 4 972 311 337 0 10 chr5 50783265 50783367 -101753892 - BC1_Mm scRNA scRNA -51 101 1 4 972 21 82 0 0 chr5 50783475 50783524 -101753735 + AT_rich Low_complexity Low_complexity 1 49 0 4 972 550 300 11 0 chr5 50783672 50783852 -101753407 - Lx8 LINE L1 -326 7147 6966 4 972 190 328 0 15 chr5 50784089 50784154 -101753105 - MIRb SINE MIR -81 187 124 4 972 1359 175 7 43 chr5 50784289 50784569 -101752690 + Lx2 LINE L1 6717 6986 -11 4 972 180 0 0 0 chr5 50785477 50785497 -101751762 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 4 972 21 0 0 0 chr5 50786280 50786301 -101750958 + AT_rich Low_complexity Low_complexity 1 21 0 4 972 378 0 0 0 chr5 50786731 50786773 -101750486 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 972 3028 29 0 18 chr5 50786773 50787166 -101750093 - L1Md_F2 LINE L1 -23 6559 6174 4 972 203 133 0 0 chr5 50787299 50787329 -101749930 + (CATTT)n Simple_repeat Simple_repeat 3 32 0 4 972 5285 72 62 9 chr5 50787330 50788073 -101749186 - L1_Mus3 LINE L1 -7 6631 5850 4 972 208 322 169 25 chr5 50788300 50788418 -101748841 + MIR SINE MIR 103 237 -25 4 972 342 320 56 34 chr5 50788440 50788673 -101748586 - L1MCa LINE L1 -6197 311 74 4 972 305 325 18 0 chr5 50789138 50789252 -101748007 - Lx8 LINE L1 -154 7319 7204 4 972 281 310 17 8 chr5 50789273 50789390 -101747869 - Lx7 LINE L1 -585 7111 6994 4 972 897 343 62 26 chr5 50789415 50789948 -101747311 + Lx8 LINE L1 6427 6978 -495 4 972 260 342 0 26 chr5 50790229 50790307 -101746952 - ID4_ SINE ID -7 76 1 4 972 425 244 22 67 chr5 50790343 50790523 -101746736 - L1MA9 LINE L1 -307 5993 5822 4 972 540 238 91 20 chr5 50790638 50790887 -101746372 - L1MA9 LINE L1 -626 5674 5412 4 972 672 74 0 0 chr5 50792309 50792404 -101744855 + (TTC)n Simple_repeat Simple_repeat 1 95 0 4 972 300 297 30 45 chr5 50793911 50794045 -101743214 - L1MEg LINE L1 -4136 1948 1817 4 972 456 51 0 0 chr5 50794352 50794411 -101742848 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 972 257 178 0 0 chr5 50794519 50794564 -101742695 - RMER30 DNA MER1_type -151 51 7 4 972 613 320 24 4 chr5 50794572 50794823 -101742436 + L1M2a LINE L1 153 408 -6760 4 972 357 24 0 0 chr5 50795744 50795786 -101741473 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 972 210 71 0 0 chr5 50795790 50795818 -101741441 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 972 413 66 0 16 chr5 50795837 50795899 -101741360 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 972 1918 180 40 11 chr5 50795960 50796331 -101740928 - ORR1C2 LTR MaLR -2 382 1 4 972 240 320 10 0 chr5 50796336 50796433 -101740826 - L1MA9 LINE L1 -165 6147 6050 4 972 26 50 0 0 chr5 50796524 50796564 -101740695 + AT_rich Low_complexity Low_complexity 1 40 0 4 972 767 296 63 95 chr5 50796566 50797167 -101740092 - L1MA9 LINE L1 -468 5844 5263 4 972 2287 75 12 3 chr5 50797286 50797607 -101739652 + L1_Mus2 LINE L1 6243 6566 0 4 972 492 318 70 70 chr5 50798993 50799179 -101738080 - B3A SINE B2 -30 186 1 4 972 297 0 0 0 chr5 50799418 50799451 -101737808 + (T)n Simple_repeat Simple_repeat 1 33 0 4 972 210 258 11 63 chr5 50800408 50800503 -101736756 + (TG)n Simple_repeat Simple_repeat 1 90 0 4 972 386 320 101 52 chr5 50800525 50800792 -101736467 - B4A SINE B4 -12 280 1 4 972 1113 251 81 31 chr5 50801719 50802076 -101735183 + MTEa LTR MaLR 5 379 0 4 972 359 288 275 9 chr5 50802952 50803178 -101734081 - MLT2B4 LTR ERVL -269 287 3 4 972 580 325 39 25 chr5 50803308 50803743 -101733516 - L1MA9 LINE L1 -301 6011 5571 4 972 642 311 77 20 chr5 50803922 50804431 -101732828 - L1M2 LINE L1 -4161 3007 2468 4 972 247 305 65 84 chr5 50804644 50804859 -101732400 - L1M2 LINE L1 -5066 2102 1892 4 972 820 275 95 128 chr5 50804923 50805323 -101731936 - MTD LTR MaLR -30 389 3 4 972 281 68 0 22 chr5 50806194 50806239 -101731020 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 972 23 33 0 0 chr5 50806408 50806438 -101730821 + AT_rich Low_complexity Low_complexity 1 30 0 4 972 290 250 127 11 chr5 50807620 50807707 -101729552 + PB1D10 SINE Alu 30 115 -2 4 972 6285 101 11 5 chr5 50807851 50809594 -101727665 - L1VL2 LINE L1 -1789 1826 75 4 972 620 358 51 77 chr5 50809774 50810228 -101727031 - MLT1F2 LTR MaLR -3 557 116 4 972 945 284 9 26 chr5 50810548 50810779 -101726480 + B4 SINE B4 66 292 0 4 972 222 62 0 0 chr5 50810819 50810851 -101726408 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4 972 2347 76 0 24 chr5 50811281 50811617 -101725642 - L1Md_F2 LINE L1 -1 6581 6254 4 972 181 244 0 0 chr5 50811922 50811963 -101725296 + L2b LINE L2 3334 3374 -1 4 972 275 325 71 19 chr5 50813045 50813199 -101724060 - MIR3 SINE MIR -27 181 20 4 972 463 224 118 7 chr5 50813722 50813857 -101723402 + Arthur1 DNA Tip100 2985 3134 -813 4 972 1311 205 19 27 chr5 50814752 50815046 -101722213 + Lx4A LINE L1 6714 7012 -38 4 972 290 231 0 11 chr5 50815048 50815140 -101722119 + Lx4A LINE L1 6965 7055 -3 4 972 966 191 32 5 chr5 50816363 50816553 -101720706 - Lx7 LINE L1 -407 7289 7095 4 972 213 39 0 0 chr5 50816608 50816634 -101720625 + (CGGGGG)n Simple_repeat Simple_repeat 2 27 0 4 972 311 237 0 14 chr5 50816676 50816817 -101720442 + (CAGA)n Simple_repeat Simple_repeat 2 140 0 4 972 738 236 0 11 chr5 50816818 50816998 -101720261 + (CAGG)n Simple_repeat Simple_repeat 2 179 0 4 972 936 136 0 0 chr5 50817010 50817186 -101720073 + (GA)n Simple_repeat Simple_repeat 2 177 0 4 972 351 335 25 25 chr5 50817186 50817342 -101719917 + B4A SINE B4 132 288 -4 4 972 279 0 0 0 chr5 50817692 50817723 -101719536 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 972 21 57 0 0 chr5 50818001 50818036 -101719223 + AT_rich Low_complexity Low_complexity 1 35 0 4 972 568 218 289 6 chr5 50819756 50819922 -101717337 + B3 SINE B2 1 213 -3 4 972 2626 77 56 8 chr5 50820026 50820404 -101716855 + MTA_Mm LTR MaLR 1 396 0 4 972 6894 93 25 70 chr5 50820406 50821546 -101715713 + MTA_Mm-int LTR MaLR 3 1091 -7 4 972 2981 49 18 15 chr5 50821555 50821950 -101715309 + MTA_Mm LTR MaLR 1 396 0 4 972 422 299 49 55 chr5 50822446 50822609 -101714650 + B3A SINE B2 3 164 -34 5 972 310 335 68 65 chr5 50822677 50823060 -101714199 - L1MEd LINE L1 -4489 1736 1353 5 972 1015 228 5 0 chr5 50823085 50823309 -101713950 - URR1B DNA MER1_type 0 225 1 5 972 5814 51 112 10 chr5 50823339 50824126 -101713133 + L1Md_F2 LINE L1 5704 6570 -12 5 972 873 293 109 27 chr5 50824151 50824481 -101712778 + ORR1D2 LTR MaLR 1 357 -13 5 972 423 0 0 0 chr5 50825531 50825578 -101711681 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 972 569 404 54 9 chr5 50825586 50825901 -101711358 + LTR16A LTR ERVL 122 450 -1 5 972 219 36 0 0 chr5 50826191 50826219 -101711040 + (A)n Simple_repeat Simple_repeat 1 28 0 5 972 233 396 42 35 chr5 50826246 50826390 -101710869 + MLT1J-int LTR MaLR 801 945 -442 5 972 24 0 0 0 chr5 50826858 50826882 -101710377 + AT_rich Low_complexity Low_complexity 1 24 0 5 972 6418 46 0 0 chr5 50826895 50827673 -101709586 - L1Md_F2 LINE L1 0 6582 5805 5 972 354 319 75 13 chr5 50827806 50827965 -101709294 - L1MEd LINE L1 -5040 1079 911 5 972 827 150 11 11 chr5 50828353 50828528 -101708731 + CT-rich Low_complexity Low_complexity 2 176 0 5 972 393 252 118 37 chr5 50828555 50828691 -101708568 - B1F SINE Alu 0 149 3 5 972 331 357 38 19 chr5 50829058 50829215 -101708044 - L1MEd LINE L1 -5955 164 5 5 972 307 358 84 0 chr5 50829488 50829667 -101707592 + Tigger13a DNA MER2_type 403 596 -175 5 972 1054 123 6 11 chr5 50829767 50829948 -101707311 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 972 520 277 244 14 chr5 50829957 50830166 -101707093 - MER57C2 LTR ERV1 -50 384 128 5 972 346 162 0 0 chr5 50830964 50831032 -101706227 - Lx5 LINE L1 -682 6368 6301 5 972 2748 211 43 5 chr5 50831026 50831626 -101705633 + Lx5 LINE L1 6381 7003 -47 5 972 426 39 0 0 chr5 50831643 50831695 -101705564 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 5 972 1279 225 93 17 chr5 50832001 50832290 -101704969 + MTD LTR MaLR 1 311 -108 5 972 1173 241 53 55 chr5 50832290 50832784 -101704475 - RMER19B LTR ERVK 0 902 182 5 972 923 122 0 33 chr5 50832933 50833085 -101704174 - B1_Mus1 SINE Alu -1 147 1 5 972 1125 83 6 0 chr5 50833103 50833259 -101704000 - L1_Mus2 LINE L1 0 6566 6410 5 972 971 294 48 27 chr5 50836093 50836425 -101700834 + ORR1E LTR MaLR 4 342 -17 5 972 195 129 0 0 chr5 50836514 50836545 -101700714 + (T)n Simple_repeat Simple_repeat 1 31 0 5 972 1720 174 82 9 chr5 50836845 50837187 -101700072 + ORR1B2 LTR MaLR 1 367 0 5 972 1246 220 65 0 chr5 50837188 50837465 -101699794 + ORR1B2-int LTR MaLR 2 296 -1213 5 972 937 224 92 12 chr5 50837492 50837741 -101699518 - Lx8 LINE L1 -354 7119 6851 5 972 183 258 109 79 chr5 50837842 50837943 -101699316 + L3 LINE CR1 717 820 -3669 5 972 565 261 42 14 chr5 50838060 50838204 -101699055 + B1_Mur1 SINE Alu 1 148 -1 5 972 477 50 0 0 chr5 50838283 50838343 -101698916 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 972 270 0 0 0 chr5 50838343 50838372 -101698887 + (GA)n Simple_repeat Simple_repeat 2 31 0 5 972 23 0 0 0 chr5 50838385 50838408 -101698851 + AT_rich Low_complexity Low_complexity 1 23 0 5 972 2864 58 46 2 chr5 50839283 50839677 -101697582 - IAPLTR2a LTR ERVK 0 411 1 5 972 1426 223 65 23 chr5 50840022 50840375 -101696884 + ORR1B2 LTR MaLR 1 368 -16 5 972 231 359 121 27 chr5 50840379 50840528 -101696731 - MLT1J LTR MaLR -196 316 154 5 972 1970 157 6 19 chr5 50840631 50840956 -101696303 + ORR1A4 LTR MaLR 1 321 -8 5 972 229 356 52 15 chr5 50841002 50841136 -101696123 - MIRb SINE MIR -67 201 63 5 972 202 327 0 0 chr5 50843368 50843423 -101693836 + (TCCA)n Simple_repeat Simple_repeat 2 56 0 5 972 555 107 0 0 chr5 50843530 50843614 -101693645 + (GGGGA)n Simple_repeat Simple_repeat 3 86 0 5 972 215 29 0 81 chr5 50844389 50844426 -101692833 + (T)n Simple_repeat Simple_repeat 1 34 0 5 972 1637 31 0 0 chr5 50844441 50844632 -101692627 - B2_Mm1t SINE B2 -2 191 1 5 972 325 321 53 60 chr5 50846735 50846981 -101690278 + MLT1B LTR MaLR 16 262 -205 5 972 193 328 85 0 chr5 50847240 50847370 -101689889 - MIRc SINE MIR -130 146 1 5 972 180 413 0 9 chr5 50848086 50848196 -101689063 + L2a LINE L2 3313 3421 -5 5 972 202 335 156 18 chr5 50848232 50848399 -101688860 - MIR SINE MIR -26 236 47 5 972 194 321 179 0 chr5 50851015 50851099 -101686160 + L2b LINE L2 3235 3333 -42 5 972 389 386 0 0 chr5 50852233 50852378 -101684881 + (TGG)n Simple_repeat Simple_repeat 2 146 0 5 972 2116 293 59 30 chr5 50853556 50854438 -101682821 - Lx8 LINE L1 -5 7468 6561 5 972 1973 172 70 0 chr5 50854477 50854820 -101682439 + ORR1B1 LTR MaLR 12 378 -16 5 972 978 277 44 54 chr5 50854827 50855255 -101682004 - Lx8 LINE L1 -947 6526 6103 5 121 1890 297 11 4 chr5 50855413 50855940 -101681319 + Lx6 LINE L1 6920 7450 -10 5 973 295 366 0 41 chr5 50856037 50856134 -101681125 - B3A SINE B2 -103 95 3 5 973 523 324 52 69 chr5 50856134 50856430 -101680829 + ORR1E LTR MaLR 65 355 -4 5 973 513 293 140 0 chr5 50857845 50858002 -101679257 + B3A SINE B2 5 183 -15 5 973 186 43 0 0 chr5 50858003 50858026 -101679233 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 973 22 94 0 0 chr5 50858034 50858098 -101679161 + AT_rich Low_complexity Low_complexity 1 64 0 5 973 236 200 0 0 chr5 50858098 50858148 -101679111 - Lx5 LINE L1 -3 7047 6998 5 973 1813 185 53 19 chr5 50858149 50858508 -101678751 + ORR1B1 LTR MaLR 24 394 0 5 973 607 277 9 53 chr5 50858508 50858696 -101678563 - Lx5 LINE L1 -50 7008 6801 5 973 282 306 62 18 chr5 50858891 50859004 -101678255 + MLT1A1 LTR MaLR 89 206 -202 5 973 246 253 146 22 chr5 50859035 50859124 -101678135 + MLT1A1 LTR MaLR 304 403 -5 5 973 353 289 173 30 chr5 50859381 50859652 -101677607 + L1ME2 LINE L1 5798 6107 -57 5 973 2619 216 70 9 chr5 50860931 50861625 -101675634 - RMER1B Other Other -14 1052 1 5 973 988 327 70 49 chr5 50862013 50862080 -101675179 - MER44B DNA MER2_type -6 544 476 5 973 315 0 0 0 chr5 50862080 50862115 -101675144 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 973 988 327 70 49 chr5 50862115 50862574 -101674685 - MER44B DNA MER2_type -75 475 7 5 973 252 371 63 81 chr5 50863137 50863360 -101673899 - MLT1F2 LTR MaLR -23 537 319 5 973 281 286 21 21 chr5 50863461 50863554 -101673705 - MLT1F2 LTR MaLR -467 93 1 5 973 194 364 0 74 chr5 50864206 50864301 -101672958 - L2b LINE L2 -1 3374 3287 5 973 5084 40 0 0 chr5 50864641 50865247 -101672012 + L1Md_T LINE L1 5977 6582 0 5 973 284 0 0 27 chr5 50865522 50865559 -101671700 + (TAA)n Simple_repeat Simple_repeat 1 36 0 5 973 231 310 14 27 chr5 50865580 50865653 -101671606 - ORR1E LTR MaLR -54 325 254 5 973 363 303 50 110 chr5 50865669 50865777 -101671482 - ORR1E LTR MaLR -171 188 91 5 973 1489 74 0 5 chr5 50865777 50865980 -101671279 - L1_Mus1 LINE L1 -3 6564 6363 5 973 363 303 50 110 chr5 50865980 50866071 -101671188 - ORR1E LTR MaLR -269 90 1 5 973 443 288 44 25 chr5 50866284 50866444 -101670815 - MLT1C LTR MaLR 0 467 305 5 973 283 299 16 93 chr5 50866445 50866574 -101670685 + MLT1A1 LTR MaLR 29 147 -261 5 973 594 273 75 7 chr5 50866587 50866893 -101670366 + L1MA4 LINE L1 5576 5902 -398 5 973 230 156 0 0 chr5 50866936 50866981 -101670278 + GA-rich Low_complexity Low_complexity 2 46 0 5 973 330 309 34 16 chr5 50867152 50867291 -101669968 + MLT1A1 LTR MaLR 174 353 -55 5 973 3223 61 16 5 chr5 50868533 50868963 -101668296 + L1Md_F2 LINE L1 6148 6582 0 5 973 1789 76 4 4 chr5 50869021 50869260 -101667999 + L1_Mus1 LINE L1 6326 6564 -3 5 973 558 43 0 0 chr5 50869554 50869623 -101667636 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 973 249 189 0 0 chr5 50869626 50869679 -101667580 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 5 973 234 356 33 0 chr5 50869846 50869936 -101667323 - MIRm SINE MIR -120 156 64 5 973 180 0 0 0 chr5 50869939 50869959 -101667300 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 973 1103 87 6 0 chr5 50870533 50870694 -101666565 + (GAA)n Simple_repeat Simple_repeat 3 164 0 5 973 315 49 0 0 chr5 50870836 50870877 -101666382 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 5 973 227 270 107 13 chr5 50871058 50871133 -101666126 + Helitron2Na_Mam RC Helitron? 130 211 -113 5 973 223 154 0 0 chr5 50871366 50871405 -101665854 + G-rich Low_complexity Low_complexity 1 39 0 5 973 243 0 0 0 chr5 50871673 50871700 -101665559 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 973 639 314 53 16 chr5 50872198 50872489 -101664770 + MLT1A0 LTR MaLR 13 362 -3 5 973 464 320 38 46 chr5 50873774 50874013 -101663246 + RMER15 LTR ERVL 336 572 -3 5 973 489 264 76 76 chr5 50874192 50874442 -101662817 - Charlie5 DNA MER1_type -2 2622 2373 5 973 24 32 0 0 chr5 50874467 50874498 -101662761 + AT_rich Low_complexity Low_complexity 1 31 0 5 973 452 306 0 0 chr5 50874530 50874628 -101662631 - RSINE1 SINE B4 0 165 68 5 973 21 57 0 0 chr5 50876652 50876687 -101660572 + AT_rich Low_complexity Low_complexity 1 35 0 5 973 736 193 29 7 chr5 50876997 50877133 -101660126 - B1_Mus1 SINE Alu 0 148 10 5 973 495 48 0 0 chr5 50877245 50877307 -101659952 + (CAAAC)n Simple_repeat Simple_repeat 3 64 0 5 973 1231 295 52 11 chr5 50877310 50877657 -101659602 - MTE2b LTR MaLR -43 336 1 5 973 439 384 26 32 chr5 50878232 50878388 -101658871 - RSINE1 SINE B4 -6 159 5 5 973 236 158 17 17 chr5 50879403 50879461 -101657798 + T-rich Low_complexity Low_complexity 3 60 0 5 973 988 168 33 19 chr5 50881591 50881803 -101655456 + Lx LINE L1 6426 6640 -14 5 973 3822 162 91 34 chr5 50881804 50882415 -101654844 + L1_Mus3 LINE L1 438 1051 -5587 5 973 183 42 0 0 chr5 50882415 50882439 -101654820 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 973 21196 155 14 16 chr5 50882439 50886637 -101650622 + L1_Mus3 LINE L1 1052 5287 -596 5 973 521 0 0 0 chr5 50886637 50886702 -101650557 - L1Md_T LINE L1 0 6582 6518 5 973 19863 124 9 19 chr5 50886702 50888234 -101649025 + L1_Mus3 LINE L1 5263 6634 -4 5 973 392 192 10 0 chr5 50888307 50888406 -101648853 + (TA)n Simple_repeat Simple_repeat 2 101 0 5 973 1233 271 55 62 chr5 50889621 50890023 -101647236 - MTD LTR MaLR -15 404 6 5 973 528 308 65 47 chr5 50891139 50891418 -101645841 - MLT2C1 LTR ERVL -113 284 1 5 973 288 77 0 0 chr5 50891929 50891968 -101645291 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 973 530 345 25 91 chr5 50892816 50893224 -101644035 + MLT1B LTR MaLR 1 381 -9 6 973 711 278 32 0 chr5 50893700 50893887 -101643372 - Lx8 LINE L1 -360 7113 6921 6 973 549 268 40 52 chr5 50893891 50894143 -101643116 - L1MA9 LINE L1 -389 5923 5675 6 973 25 31 0 0 chr5 50894623 50894655 -101642604 + AT_rich Low_complexity Low_complexity 1 32 0 6 973 442 322 8 8 chr5 50894672 50894791 -101642468 + RSINE1 SINE B4 3 121 -44 6 973 351 0 0 0 chr5 50894813 50894852 -101642407 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 973 40 37 0 0 chr5 50894948 50895002 -101642257 + AT_rich Low_complexity Low_complexity 1 54 0 6 973 313 289 182 13 chr5 50895497 50895651 -101641608 - HAL1-3A_ME LINE L1 -395 2463 2284 6 973 614 95 0 10 chr5 50895651 50895747 -101641512 + (TCCCC)n Simple_repeat Simple_repeat 5 99 0 6 973 372 331 125 17 chr5 50896093 50896388 -101640871 + L1ME3B LINE L1 5652 5978 -262 6 973 379 307 30 30 chr5 50896734 50896865 -101640394 - L1M5 LINE L1 -1219 4927 4797 6 973 546 16 0 0 chr5 50898005 50898068 -101639191 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 973 519 148 0 0 chr5 50898068 50898156 -101639103 + (TG)n Simple_repeat Simple_repeat 2 89 0 6 973 1115 77 14 0 chr5 50898237 50898380 -101638879 + B1_Mur4 SINE Alu 1 145 -5 6 973 287 374 91 44 chr5 50898780 50899188 -101638071 + L2 LINE L2 2500 2926 -493 6 973 415 228 114 61 chr5 50899816 50899947 -101637312 - HAL1-3A_ME LINE L1 -744 2114 1977 6 973 284 296 86 29 chr5 50900105 50900244 -101637015 - MIRb SINE MIR -110 158 12 6 973 181 370 25 0 chr5 50900421 50900502 -101636757 + MIRc SINE MIR 79 161 -107 6 973 297 390 34 20 chr5 50900840 50901044 -101636215 + MLT1L LTR MaLR 395 601 -9 6 973 324 319 55 65 chr5 50901119 50901411 -101635848 - L2 LINE L2 -469 2950 2662 6 973 395 272 41 62 chr5 50902204 50902349 -101634910 - B4A SINE B4 -45 247 106 6 973 862 142 0 0 chr5 50902222 50902349 -101634910 - B1_Mus1 SINE Alu 0 148 22 6 973 233 261 131 97 chr5 50902349 50902483 -101634776 + YREP_Mm Unknown Unknown 166 431 -1381 6 973 225 196 0 0 chr5 50902635 50902681 -101634578 + (CAT)n Simple_repeat Simple_repeat 2 47 0 6 973 359 307 164 38 chr5 50902831 50903044 -101634215 + RMER15 LTR ERVL 336 575 0 6 973 190 343 100 29 chr5 50903511 50903721 -101633538 - L2a LINE L2 0 3426 3202 6 973 951 341 177 46 chr5 50903763 50905009 -101632250 - L2 LINE L2 -1884 1535 127 6 973 369 233 0 0 chr5 50905015 50905088 -101632171 + ORR1B1 LTR MaLR 1 73 -321 6 973 3756 192 18 49 chr5 50905093 50905925 -101631334 + ORR1B1-int LTR MaLR 1 806 -1157 6 973 1236 188 66 66 chr5 50905722 50905995 -101631264 + MT2B LTR ERVL 18 290 -311 6 973 813 235 13 4 chr5 50905952 50906187 -101631072 + ORR1B1-int LTR MaLR 719 955 -1008 6 973 654 139 28 0 chr5 50906186 50906294 -101630965 + ORR1B1-int LTR MaLR 1166 1276 -687 6 973 273 314 0 25 chr5 50906342 50906499 -101630760 + RMER17A LTR ERVK 310 462 -289 6 973 694 239 35 12 chr5 50907746 50907915 -101629344 + MER5B DNA MER1_type 5 177 -1 6 973 354 80 0 0 chr5 50908434 50908484 -101628775 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 973 351 0 0 0 chr5 50910886 50910925 -101626334 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 973 423 0 0 0 chr5 50910925 50910971 -101626288 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 973 238 281 94 10 chr5 50910988 50911161 -101626098 - L1M2 LINE L1 -548 5764 5568 6 973 271 317 91 0 chr5 50911176 50911362 -101625897 - L1M2 LINE L1 -913 5230 5028 6 973 247 190 0 17 chr5 50911668 50911727 -101625532 - Tigger12c DNA MER2_type -153 581 524 6 973 471 252 25 8 chr5 50911714 50911834 -101625425 - Tigger12c DNA MER2_type -442 292 171 6 973 392 310 133 21 chr5 50912104 50912154 -101625105 - B3 SINE B2 -7 209 153 6 973 501 47 0 0 chr5 50912154 50912218 -101625041 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 973 392 310 133 21 chr5 50912218 50912355 -101624904 - B3 SINE B2 -64 152 3 6 973 398 303 59 22 chr5 50912875 50913010 -101624249 - MLT1C LTR MaLR -9 458 319 6 973 635 37 12 0 chr5 50913021 50913103 -101624156 + (TC)n Simple_repeat Simple_repeat 1 83 0 6 973 3645 84 0 6 chr5 50913460 50913949 -101623310 - L1Md_F2 LINE L1 -12 6570 6085 6 973 7816 38 11 1 chr5 50913955 50915120 -101622139 - L1Md_F2 LINE L1 0 6582 5407 6 973 2825 188 190 70 chr5 50915123 50915907 -101621352 - RMER19B LTR ERVK -24 878 1 6 973 272 293 81 0 chr5 50916866 50916965 -101620294 + MIR SINE MIR 78 184 -78 6 973 212 157 39 0 chr5 50918030 50918081 -101619178 + GA-rich Low_complexity Low_complexity 4 56 0 6 973 317 272 114 13 chr5 50918210 50918359 -101618900 + L3 LINE CR1 3754 3917 -572 6 973 186 325 176 41 chr5 50918377 50918695 -101618564 + L2c LINE L2 3023 3383 -4 6 973 262 360 21 35 chr5 50920109 50920253 -101617006 + L3 LINE CR1 4346 4487 -2 6 973 496 300 88 36 chr5 50922317 50922646 -101614613 + MER113 DNA MER1_type 88 433 -88 6 973 790 234 20 78 chr5 50922696 50923002 -101614257 + Lx3_Mus LINE L1 29 316 -6668 6 973 30476 100 34 5 chr5 50923001 50925769 -101611490 + Lx3_Mus LINE L1 712 3560 -2326 6 973 2581 35 3 6 chr5 50925769 50926086 -101611173 - L1Md_F2 LINE L1 -13 6569 6254 6 973 30476 94 16 21 chr5 50926086 50929190 -101608069 + Lx3_Mus LINE L1 3561 6666 -343 6 973 1169 55 14 0 chr5 50929190 50929335 -101607924 + B1_Mm SINE Alu 1 147 0 6 973 8347 93 29 49 chr5 50929335 50929654 -101607605 + Lx3_Mus LINE L1 6667 6960 -49 6 973 5334 64 3 6 chr5 50929739 50930431 -101606828 - L1Md_F2 LINE L1 -2 6580 5891 6 973 999 115 0 33 chr5 50931070 50931223 -101606036 + B1_Mus1 SINE Alu 1 148 0 6 973 494 215 56 88 chr5 50931577 50931789 -101605470 + ORR1D2 LTR MaLR 139 370 0 6 973 235 45 0 64 chr5 50931797 50931844 -101605415 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 973 690 13 0 0 chr5 50931859 50931938 -101605321 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 973 228 246 0 32 chr5 50933227 50933290 -101603969 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 6 973 267 202 0 35 chr5 50933351 50933438 -101603821 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 973 337 305 67 8 chr5 50933447 50933566 -101603693 - B1F SINE Alu -21 128 3 6 973 300 390 51 0 chr5 50933683 50933878 -101603381 + MER63A DNA AcHobo 3 207 -3 6 973 799 200 14 0 chr5 50934049 50934194 -101603065 + B1_Mur4 SINE Alu 4 150 0 6 973 333 266 183 37 chr5 50934300 50934464 -101602795 - MER58C DNA MER1_type -17 198 11 6 973 25 31 0 0 chr5 50935439 50935471 -101601788 + AT_rich Low_complexity Low_complexity 1 32 0 6 973 207 100 0 0 chr5 50935587 50935617 -101601642 + (AGGGGG)n Simple_repeat Simple_repeat 4 33 0 6 973 612 0 0 0 chr5 50937281 50937349 -101599910 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 973 393 227 0 76 chr5 50937349 50937448 -101599811 - PB1D10 SINE Alu -16 101 9 6 973 378 0 0 0 chr5 50937656 50937698 -101599561 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 973 225 0 0 0 chr5 50938484 50938509 -101598750 + (A)n Simple_repeat Simple_repeat 1 25 0 6 973 264 200 20 50 chr5 50938873 50938973 -101598286 + (CAA)n Simple_repeat Simple_repeat 3 99 0 6 973 508 249 218 6 chr5 50938990 50939164 -101598095 + B3 SINE B2 1 211 -5 6 973 803 268 58 31 chr5 50939538 50939921 -101597338 + L1_Rod LINE L1 5463 5868 -12 6 973 533 328 89 16 chr5 50940397 50940701 -101596558 + MER2 DNA MER2_type 10 335 -10 6 973 837 295 50 75 chr5 50941048 50941407 -101595852 - ORR1E LTR MaLR -4 355 6 6 973 194 418 63 11 chr5 50941505 50941696 -101595563 + MIRb SINE MIR 65 265 -3 6 973 26 0 0 0 chr5 50941977 50942003 -101595256 + AT_rich Low_complexity Low_complexity 1 26 0 6 973 300 111 0 0 chr5 50942434 50942479 -101594780 + (T)n Simple_repeat Simple_repeat 1 45 0 6 973 33 0 0 0 chr5 50942608 50942641 -101594618 + AT_rich Low_complexity Low_complexity 1 33 0 6 973 21 0 0 0 chr5 50942961 50942982 -101594277 + AT_rich Low_complexity Low_complexity 1 21 0 6 973 270 0 0 0 chr5 50944052 50944082 -101593177 + (TC)n Simple_repeat Simple_repeat 2 31 0 6 973 435 19 0 0 chr5 50944082 50944133 -101593126 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 973 219 171 0 0 chr5 50944649 50944690 -101592569 - L2a LINE L2 -79 3347 3307 6 973 189 147 0 0 chr5 50945584 50945618 -101591641 + (TTG)n Simple_repeat Simple_repeat 3 36 0 6 973 375 281 66 58 chr5 50945692 50945813 -101591446 + B4 SINE B4 5 126 -166 6 973 31981 90 10 2 chr5 50945815 50950950 -101586309 + L1Md_F2 LINE L1 457 5585 -298 6 973 7482 74 8 2 chr5 50950951 50951939 -101585320 + L1Md_F2 LINE L1 5587 6580 -2 6 973 1170 98 31 0 chr5 50952043 50952206 -101585053 + L1_Mm LINE L1 5533 5700 -183 6 973 289 283 28 92 chr5 50952211 50952320 -101584939 + B4A SINE B4 191 292 0 6 973 208 289 70 69 chr5 50953753 50953932 -101583327 + MIRc SINE MIR 37 203 -65 6 973 282 316 104 8 chr5 50953973 50954107 -101583152 - MIRb SINE MIR -18 250 104 6 973 423 106 0 0 chr5 50954503 50954569 -101582690 + (TTCA)n Simple_repeat Simple_repeat 4 69 0 6 973 272 353 76 22 chr5 50956164 50956387 -101580872 + L2a LINE L2 2658 2892 -527 6 973 210 327 77 34 chr5 50956698 50956815 -101580444 + L2a LINE L2 3260 3381 -45 6 973 525 335 35 22 chr5 50958704 50958936 -101578323 - MLT1H2 LTR MaLR 0 489 255 6 973 254 227 30 15 chr5 50958937 50959004 -101578255 + CT-rich Low_complexity Low_complexity 3 70 0 6 973 217 357 21 21 chr5 50960876 50961019 -101576240 + MIRb SINE MIR 15 157 -111 6 973 195 356 81 0 chr5 50961593 50961680 -101575579 + L2 LINE L2 2638 2731 -688 6 973 204 91 0 57 chr5 50961808 50961843 -101575416 + (TTA)n Simple_repeat Simple_repeat 1 33 0 6 973 266 306 0 0 chr5 50962120 50962182 -101575077 - L4 LINE RTE -1105 924 863 6 973 2192 223 152 54 chr5 50963402 50964107 -101573152 + Lx9 LINE L1 6701 7474 -170 6 973 183 389 61 9 chr5 50964378 50964492 -101572767 - L3 LINE CR1 -73 4416 4297 6 973 3389 155 26 9 chr5 50965207 50965781 -101571478 + Lx4A LINE L1 6472 7055 -3 6 973 902 347 72 35 chr5 50966165 50967055 -101570204 - HERVL40-int LTR ERVL -1205 4325 3403 6 973 580 323 92 19 chr5 50967416 50967785 -101569474 - HERVL40-int LTR ERVL -2604 2926 2531 6 973 789 335 40 57 chr5 50967802 50968308 -101568951 - HERVL40-int LTR ERVL -3928 1602 1106 6 973 715 311 77 100 chr5 50968353 50968732 -101568527 - MTE2a LTR MaLR 0 379 10 6 973 22 0 0 0 chr5 50968893 50968915 -101568344 + AT_rich Low_complexity Low_complexity 1 22 0 6 973 583 275 81 45 chr5 50969097 50969295 -101567964 - B4A SINE B4 -87 205 1 7 973 408 306 56 0 chr5 50969321 50969465 -101567794 - HERVL40-int LTR ERVL -4784 746 595 6 973 727 119 16 0 chr5 50969468 50969594 -101567665 + (TG)n Simple_repeat Simple_repeat 2 129 0 7 973 225 0 0 0 chr5 50969594 50969619 -101567640 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 973 700 376 66 31 chr5 50970912 50971519 -101565740 - L3 LINE CR1 -290 4199 3572 7 973 2346 124 92 29 chr5 50971848 50972295 -101564964 - IAPLTR2_Mm LTR ERVK 0 475 1 7 973 5991 46 7 12 chr5 50972295 50973045 -101564214 - IAPEz-int LTR ERVK 0 6481 5736 7 973 2283 54 0 0 chr5 50973044 50973322 -101563937 - IAPEz-int LTR ERVK -4845 1636 1359 7 973 4017 69 26 26 chr5 50973322 50973891 -101563368 - IAPEz-int LTR ERVK -5819 662 94 7 973 231 321 0 0 chr5 50973894 50973950 -101563309 - RLTR27 LTR ERVK -34 275 220 7 973 411 110 0 221 chr5 50973950 50974090 -101563169 - IAPEz-int LTR ERVK -6369 112 4 7 973 2361 122 92 29 chr5 50974109 50974556 -101562703 - IAPLTR2_Mm LTR ERVK 0 475 1 7 973 2978 74 48 2 chr5 50975433 50975853 -101561406 - L1_Mus4 LINE L1 -1 6635 6197 7 973 21 0 0 0 chr5 50975988 50976009 -101561250 + AT_rich Low_complexity Low_complexity 1 21 0 7 973 186 43 0 0 chr5 50976858 50976881 -101560378 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7 973 514 322 62 31 chr5 50977354 50977931 -101559328 - L1ME3A LINE L1 -341 5832 5235 7 973 34 0 0 0 chr5 50978073 50978107 -101559152 + AT_rich Low_complexity Low_complexity 1 34 0 7 973 359 346 123 29 chr5 50978176 50978518 -101558741 + L2a LINE L2 3053 3426 0 7 973 184 304 42 42 chr5 50978830 50978902 -101558357 - MIRm SINE MIR -92 184 113 7 973 467 309 29 0 chr5 50979900 50980039 -101557220 + B1F SINE Alu 1 143 -6 7 973 315 121 0 0 chr5 50981265 50981323 -101555936 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 7 973 529 335 114 0 chr5 50981705 50981863 -101555396 + B3A SINE B2 1 176 -22 7 973 420 20 0 0 chr5 50981868 50981917 -101555342 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 973 2190 37 4 4 chr5 50981918 50982191 -101555068 - MTA_Mm LTR MaLR 0 396 124 7 973 3153 60 0 0 chr5 50982185 50982600 -101554659 - MT-int LTR MaLR -681 417 3 7 973 1043 32 0 0 chr5 50982604 50982730 -101554529 - MTA_Mm LTR MaLR -270 126 1 7 973 252 213 10 50 chr5 50982730 50982816 -101554443 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 7 973 339 85 0 0 chr5 50982816 50982863 -101554396 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 973 252 213 10 50 chr5 50982863 50982875 -101554384 + (CATATA)n Simple_repeat Simple_repeat 6 17 0 7 973 467 371 65 13 chr5 50983359 50983665 -101553594 - MLT1F LTR MaLR -194 354 33 7 973 450 0 0 0 chr5 50983977 50984027 -101553232 + (TC)n Simple_repeat Simple_repeat 2 51 0 7 973 21 0 0 0 chr5 50984436 50984457 -101552802 + AT_rich Low_complexity Low_complexity 1 21 0 7 973 493 0 0 0 chr5 50984479 50984540 -101552719 - L1Md_T LINE L1 -1 6581 6521 7 973 1348 268 21 42 chr5 50984695 50985073 -101552186 + MTD LTR MaLR 1 370 -49 7 973 203 371 68 25 chr5 50985570 50985733 -101551526 + MIR SINE MIR 64 233 -29 7 973 314 266 50 79 chr5 50985985 50986124 -101551135 - MLT1H1 LTR MaLR 0 555 421 7 973 255 301 55 0 chr5 50986290 50986363 -101550896 - MLT1H1 LTR MaLR -411 149 73 7 973 490 329 36 0 chr5 50986588 50986725 -101550534 - B1_Mur1 SINE Alu -5 144 3 7 973 232 247 106 96 chr5 50986650 50986744 -101550515 - MT2C_Mm LTR ERVL -277 198 104 7 974 375 305 99 36 chr5 50987122 50987455 -101549804 + Lx9 LINE L1 5882 6235 -1409 7 974 399 100 0 0 chr5 50987500 50987570 -101549689 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 974 5441 209 60 32 chr5 50987571 50987771 -101549488 + Lx9 LINE L1 6349 6537 -1107 7 974 1921 66 0 26 chr5 50987771 50988035 -101549224 - L1_Mus1 LINE L1 -2 6565 6309 7 974 5441 209 60 32 chr5 50988035 50989094 -101548165 + Lx9 LINE L1 6538 7643 -1 7 974 454 159 37 18 chr5 50990494 50990603 -101546656 - Lx5 LINE L1 -3 7047 6937 7 974 2542 117 31 3 chr5 50990618 50991005 -101546254 + MTB LTR MaLR 3 400 0 7 974 5850 120 41 91 chr5 50991005 50992161 -101545098 + MTB-int LTR MaLR 1 1098 0 7 974 1149 115 17 0 chr5 50992161 50992335 -101544924 + MTB LTR MaLR 1 177 -223 7 974 18166 174 40 15 chr5 50992336 50994536 -101542723 - L1_Mur2 LINE L1 -607 5270 3048 7 974 198 0 0 0 chr5 50994536 50994558 -101542701 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 7 974 18166 174 40 15 chr5 50994558 50995497 -101541762 - L1_Mur2 LINE L1 -2830 3047 2064 7 974 387 0 0 0 chr5 50995497 50995540 -101541719 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 974 18166 174 40 15 chr5 50995540 50996191 -101541068 - L1_Mur2 LINE L1 -3814 2063 1386 7 974 7933 48 3 3 chr5 50996184 50997598 -101539661 - L1Md_F2 LINE L1 0 6582 5169 7 974 1360 192 63 37 chr5 50997595 50997905 -101539354 - L1_Mur2 LINE L1 -4484 1393 1021 7 974 1208 74 0 0 chr5 50997905 50998067 -101539192 + L1_Mus1 LINE L1 6397 6558 -9 7 974 1360 234 135 95 chr5 50998067 50998532 -101538727 - L1_Mur2 LINE L1 -6066 1020 586 7 974 488 302 78 22 chr5 50998885 50999313 -101537946 + L1M4b LINE L1 1371 1935 -5167 7 974 481 333 142 33 chr5 50999385 50999898 -101537361 + L1M4b LINE L1 2039 2607 -4495 7 974 626 326 131 22 chr5 51000168 51001049 -101536210 + L1MEc LINE L1 2159 3128 -3191 1 974 896 77 85 0 chr5 51001240 51001370 -101535889 + B1_Mus2 SINE Alu 1 141 -6 2 974 3624 112 44 12 chr5 51001533 51002105 -101535154 + L1_Mus3 LINE L1 6033 6622 -16 3 974 2636 60 20 0 chr5 51002132 51002480 -101534779 - L1_Mus3 LINE L1 -556 6082 5728 4 974 4061 95 4 2 chr5 51002482 51003039 -101534220 + L1_Mus3 LINE L1 6079 6636 -2 4 974 22 0 0 0 chr5 51003069 51003091 -101534168 + AT_rich Low_complexity Low_complexity 1 22 0 5 974 310 341 55 27 chr5 51003424 51003633 -101533626 + L1MEc LINE L1 5430 5645 -707 1 974 288 299 29 61 chr5 51003849 51004037 -101533222 - MTEb LTR MaLR -10 369 191 6 974 239 333 0 0 chr5 51004042 51004114 -101533145 + GA-rich Low_complexity Low_complexity 6 77 0 7 974 4172 184 8 9 chr5 51004491 51005295 -101531964 - Lx4B LINE L1 0 7058 6256 8 974 4280 145 39 6 chr5 51005295 51006384 -101530875 + Lx4B LINE L1 5097 6244 -814 8 974 192 312 62 0 chr5 51010181 51010245 -101527014 + MIR SINE MIR 85 152 -56 9 974 321 89 0 0 chr5 51011367 51011412 -101525847 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 974 476 329 7 14 chr5 51011589 51011734 -101525525 - RSINE1 SINE B4 -21 144 1 1 974 1586 328 68 39 chr5 51012511 51013045 -101524214 - Lx8 LINE L1 -416 7057 6485 1 974 371 92 0 84 chr5 51013045 51013164 -101524095 + (CATAG)n Simple_repeat Simple_repeat 2 110 0 1 974 1586 328 68 39 chr5 51013164 51013584 -101523675 - Lx8 LINE L1 -989 6484 6075 1 974 366 23 0 0 chr5 51013710 51013753 -101523506 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 974 1398 240 80 59 chr5 51014177 51014789 -101522470 + Charlie21a DNA MER1_type 564 1188 -25 1 974 246 243 52 91 chr5 51017087 51017164 -101520095 + MER67B LTR ERV1 51 124 -537 1 974 1031 85 13 0 chr5 51017179 51017430 -101519829 + L1_Mus3 LINE L1 6473 6638 0 1 974 974 107 0 7 chr5 51018704 51018855 -101518404 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 1 974 670 202 251 0 chr5 51019265 51019428 -101517831 + B3 SINE B2 1 204 -12 1 974 38 68 0 0 chr5 51019428 51019501 -101517758 + AT_rich Low_complexity Low_complexity 1 73 0 2 974 572 274 141 53 chr5 51020244 51020584 -101516675 - MTE2b LTR MaLR 0 379 10 2 974 662 189 171 0 chr5 51020740 51020904 -101516355 + URR1A DNA MER1_type 1 192 -34 2 974 1060 74 0 0 chr5 51022664 51022799 -101514460 + B1_Mus2 SINE Alu 4 138 -9 2 974 225 108 0 0 chr5 51022821 51022858 -101514401 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 2 974 32 57 0 0 chr5 51023403 51023456 -101513803 + AT_rich Low_complexity Low_complexity 1 53 0 2 974 659 226 51 26 chr5 51023496 51023676 -101513583 + L1_Mur3 LINE L1 1882 2067 -3813 2 974 240 35 0 0 chr5 51023676 51023705 -101513554 + (CCA)n Simple_repeat Simple_repeat 1 29 0 2 974 659 226 51 26 chr5 51023705 51023719 -101513540 + L1_Mur3 LINE L1 2068 2081 -3799 2 974 26 0 0 0 chr5 51023800 51023826 -101513433 + AT_rich Low_complexity Low_complexity 1 26 0 2 974 576 29 0 0 chr5 51023959 51024029 -101513230 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 974 281 225 22 22 chr5 51024480 51024571 -101512688 + (TATATG)n Simple_repeat Simple_repeat 5 95 0 3 974 252 329 44 66 chr5 51027933 51028115 -101509144 - MTEa LTR MaLR -1 378 201 3 974 405 0 0 0 chr5 51029272 51029317 -101507942 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 974 405 257 43 52 chr5 51030285 51030400 -101506859 - B1F SINE Alu -25 124 11 3 974 309 349 144 18 chr5 51031701 51032034 -101505225 - L2b LINE L2 -12 3414 3040 3 974 205 253 135 52 chr5 51032425 51032521 -101504738 - MIRc SINE MIR -147 121 18 3 974 213 53 23 116 chr5 51033397 51033440 -101503819 - L2a LINE L2 -13 3413 3375 3 974 537 111 0 0 chr5 51033592 51033673 -101503586 - B2_Mm2 SINE B2 -108 87 7 3 974 659 184 136 45 chr5 51033689 51033865 -101503394 + Lx4B LINE L1 6867 7058 0 3 974 639 326 121 68 chr5 51033895 51034310 -101502949 - MLT2B4 LTR ERVL -108 448 10 3 974 558 67 0 0 chr5 51034563 51034638 -101502621 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 974 326 294 194 22 chr5 51035644 51036009 -101501250 - L1MC3 LINE L1 -53 7732 7306 4 974 233 320 13 0 chr5 51036026 51036104 -101501155 - MTEa LTR MaLR -13 366 288 4 974 26 30 0 0 chr5 51036300 51036333 -101500926 + AT_rich Low_complexity Low_complexity 1 33 0 4 974 583 297 106 38 chr5 51036348 51036895 -101500364 - L1MC3 LINE L1 -486 7299 6716 4 974 204 40 0 0 chr5 51036939 51036964 -101500295 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 4 974 1272 232 132 102 chr5 51036964 51037435 -101499824 - Lx5 LINE L1 -5 7045 6561 4 974 303 272 140 56 chr5 51037519 51037698 -101499561 + MER113 DNA MER1_type 107 300 -221 4 974 231 284 49 12 chr5 51037838 51037920 -101499339 - MLT1A1 LTR MaLR -8 400 316 4 974 797 311 28 28 chr5 51037923 51038244 -101499015 - L1_Rod LINE L1 -6781 391 71 4 974 841 211 128 10 chr5 51038850 51039046 -101498213 + URR1A DNA MER1_type 1 219 -7 4 974 233 85 0 60 chr5 51039929 51039979 -101497280 + (CAAAAA)n Simple_repeat Simple_repeat 3 49 0 5 974 1275 119 0 15 chr5 51040347 51040543 -101496716 + B2_Mm2 SINE B2 1 193 -2 5 974 516 276 0 29 chr5 51040584 51040722 -101496537 - Lx9 LINE L1 -993 6480 6347 5 974 324 0 0 0 chr5 51040731 51040767 -101496492 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 974 1328 269 58 71 chr5 51040845 51041707 -101495552 - Lx9 LINE L1 -1527 6169 5272 5 974 1084 88 0 7 chr5 51041746 51041895 -101495364 + B1_Mus1 SINE Alu 1 148 0 5 974 486 83 0 0 chr5 51041927 51041999 -101495260 + (GGAA)n Simple_repeat Simple_repeat 2 73 0 5 974 8023 55 4 4 chr5 51042032 51043689 -101493570 - L1Md_F2 LINE L1 0 6582 4928 5 974 1479 188 40 16 chr5 51043694 51043997 -101493262 + MTC LTR MaLR 110 419 -2 5 974 265 252 2 2 chr5 51044009 51044107 -101493152 - Lx9 LINE L1 -593 5287 5161 5 974 189 107 0 0 chr5 51044207 51044235 -101493024 + (ATG)n Simple_repeat Simple_repeat 2 29 0 5 974 525 221 25 26 chr5 51044235 51044410 -101492849 + ORR1C2 LTR MaLR 1 166 -218 5 974 681 13 0 0 chr5 51044410 51044488 -101492771 + (TC)n Simple_repeat Simple_repeat 2 79 0 6 974 3281 165 29 0 chr5 51044516 51045068 -101492191 - RLTR20D LTR ERVK 0 568 1 6 974 200 34 0 33 chr5 51045115 51045145 -101492114 + (ATG)n Simple_repeat Simple_repeat 1 29 0 6 974 547 191 0 0 chr5 51045145 51045250 -101492009 + ORR1C2 LTR MaLR 278 382 -2 5 974 289 361 81 9 chr5 51045302 51045523 -101491736 - MIR SINE MIR -25 237 1 6 974 296 261 84 67 chr5 51045572 51045691 -101491568 + L2c LINE L2 3266 3386 -1 6 974 883 192 120 47 chr5 51046188 51046321 -101490938 - Lx9 LINE L1 -2 7642 7488 6 974 447 125 0 0 chr5 51046321 51046393 -101490866 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 974 883 192 120 47 chr5 51046393 51046560 -101490699 - Lx9 LINE L1 -157 7487 7320 6 974 767 209 14 0 chr5 51046596 51046744 -101490515 + URR1A DNA MER1_type 72 221 -5 6 974 5388 90 55 1 chr5 51047422 51047871 -101489388 + L1Md_F2 LINE L1 4776 5265 -618 6 974 450 0 0 0 chr5 51047871 51047921 -101489338 + (TA)n Simple_repeat Simple_repeat 1 50 0 6 974 5388 90 55 1 chr5 51047921 51048241 -101489018 + L1Md_F2 LINE L1 5266 5586 -297 6 974 7368 67 21 3 chr5 51048243 51049216 -101488043 + L1Md_F2 LINE L1 5589 6578 -4 6 974 292 248 73 24 chr5 51049494 51049618 -101487641 - Lx7 LINE L1 0 7696 7567 7 974 215 103 0 25 chr5 51049623 51049663 -101487596 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 7 974 405 86 0 0 chr5 51049701 51049759 -101487500 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 974 264 283 9 0 chr5 51049780 51049893 -101487366 - Lx7 LINE L1 -285 7411 7298 7 974 197 321 0 24 chr5 51051337 51051420 -101485839 + MIRc SINE MIR 102 182 -86 7 974 257 75 25 0 chr5 51051617 51051657 -101485602 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 7 974 295 119 0 0 chr5 51051657 51051699 -101485560 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 7 974 890 141 17 6 chr5 51051700 51051797 -101485462 + polypurine Low_complexity Low_complexity 1 96 0 7 974 889 45 10 82 chr5 51051797 51051991 -101485268 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 7 974 890 141 17 6 chr5 51051991 51052071 -101485188 + polypurine Low_complexity Low_complexity 97 179 0 7 974 319 123 62 0 chr5 51052071 51052152 -101485107 + GA-rich Low_complexity Low_complexity 94 179 0 7 974 774 101 5 73 chr5 51052138 51052330 -101484929 + A-rich Low_complexity Low_complexity 1 179 0 8 974 258 136 0 0 chr5 51055013 51055057 -101482202 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 974 306 0 0 0 chr5 51055079 51055113 -101482146 + (TC)n Simple_repeat Simple_repeat 1 34 0 8 974 333 0 0 0 chr5 51055113 51055149 -101482110 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 974 186 300 0 16 chr5 51055541 51055602 -101481657 - L2a LINE L2 -73 3353 3294 8 974 2165 288 61 12 chr5 51055616 51056354 -101480905 + Lx8 LINE L1 6465 7238 -235 8 974 3027 204 79 101 chr5 51057401 51058250 -101479009 + RMER21B LTR ERV1 13 842 0 8 974 684 0 0 0 chr5 51058968 51059044 -101478215 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 8 974 384 296 76 65 chr5 51059061 51059245 -101478014 - Lx8 LINE L1 -144 7329 7144 8 974 24 67 0 0 chr5 51059627 51059672 -101477587 + AT_rich Low_complexity Low_complexity 1 45 0 8 974 228 196 71 0 chr5 51059677 51059733 -101477526 - MLT2C2 LTR ERVL -1 566 507 9 974 399 127 0 0 chr5 51059748 51059811 -101477448 + (TA)n Simple_repeat Simple_repeat 2 64 0 9 974 689 43 0 11 chr5 51059814 51059908 -101477351 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 9 974 373 313 130 34 chr5 51059966 51060278 -101476981 - MLT2C2 LTR ERVL -53 344 5 9 974 1894 61 44 30 chr5 51060292 51060563 -101476696 + L1_Mus2 LINE L1 6290 6564 -2 9 974 1147 49 7 0 chr5 51061621 51061765 -101475494 + B1_Mm SINE Alu 2 146 -1 9 974 670 313 138 112 chr5 51061853 51062202 -101475057 - MLT1A LTR MaLR -50 358 1 9 974 285 258 65 93 chr5 51062628 51062735 -101474524 + B3 SINE B2 83 186 -30 9 974 715 320 9 33 chr5 51062865 51063078 -101474181 + B3 SINE B2 8 215 -1 9 974 1779 172 26 23 chr5 51063670 51064021 -101473238 + ORR1B2 LTR MaLR 1 352 -15 9 974 180 176 0 0 chr5 51064366 51064400 -101472859 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 974 333 0 0 0 chr5 51064754 51064791 -101472468 + (A)n Simple_repeat Simple_repeat 1 37 0 1 974 22 0 0 0 chr5 51065101 51065123 -101472136 + AT_rich Low_complexity Low_complexity 1 22 0 1 974 323 231 235 17 chr5 51066468 51066587 -101470672 - MamRep137 DNA TcMar? -249 195 51 1 974 231 309 143 32 chr5 51067148 51067302 -101469957 + MIR SINE MIR 66 236 -26 1 974 191 327 0 0 chr5 51067320 51067375 -101469884 + L2c LINE L2 3110 3164 -223 1 974 183 229 95 32 chr5 51067466 51067529 -101469730 + L2c LINE L2 3268 3334 -92 1 974 212 414 40 17 chr5 51067688 51067865 -101469394 - MIRb SINE MIR -84 184 4 1 974 415 317 49 16 chr5 51067960 51068143 -101469116 + L4 LINE RTE 1490 1678 -351 1 974 1664 199 123 11 chr5 51068357 51068723 -101468536 + MTD LTR MaLR 1 407 -12 1 974 312 172 0 0 chr5 51069282 51069340 -101467919 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 1 974 282 281 0 0 chr5 51070839 51070896 -101466363 - MT2A LTR ERVL -82 451 395 1 974 820 164 0 67 chr5 51070875 51071025 -101466234 + ORR1A4 LTR MaLR 105 244 -85 1 974 1111 107 6 6 chr5 51072753 51072932 -101464327 + (GGA)n Simple_repeat Simple_repeat 2 180 0 1 974 489 17 0 0 chr5 51072932 51072990 -101464269 + (GAA)n Simple_repeat Simple_repeat 3 60 0 1 974 310 347 59 39 chr5 51074299 51074452 -101462807 + HAL1-3A_ME LINE L1 2284 2439 -419 1 974 315 178 0 79 chr5 51074470 51074659 -101462600 + GA-rich Low_complexity Low_complexity 2 175 0 1 974 1510 0 0 22 chr5 51074659 51074843 -101462416 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 1 974 1122 222 128 19 chr5 51074843 51075203 -101462056 - MT2A LTR ERVL -134 399 1 1 974 799 315 28 51 chr5 51075332 51075686 -101461573 + ORR1E LTR MaLR 3 348 -11 1 974 252 0 0 0 chr5 51077348 51077376 -101459883 + (T)n Simple_repeat Simple_repeat 1 28 0 1 974 737 328 29 14 chr5 51077459 51077737 -101459522 - MLT1A1 LTR MaLR -8 400 119 1 974 381 260 114 0 chr5 51078570 51078693 -101458566 - MTD LTR MaLR -14 405 269 1 974 284 298 132 114 chr5 51079047 51079645 -101457614 + L3 LINE CR1 2060 2668 -1821 1 974 303 299 52 0 chr5 51079643 51079740 -101457519 - MIRc SINE MIR -85 183 82 1 974 244 277 48 0 chr5 51080387 51080470 -101456789 - MIRc SINE MIR -61 207 121 1 974 533 284 110 95 chr5 51081793 51082167 -101455092 + MLT1B LTR MaLR 3 467 0 1 974 666 68 0 0 chr5 51082240 51082328 -101454931 + (GA)n Simple_repeat Simple_repeat 1 88 0 1 974 403 325 28 37 chr5 51083081 51083295 -101453964 - B3 SINE B2 -2 214 3 1 974 204 245 0 0 chr5 51083757 51083806 -101453453 + T-rich Low_complexity Low_complexity 1 49 0 1 974 1359 235 82 3 chr5 51083806 51084109 -101453150 + MTD LTR MaLR 79 405 -14 1 974 216 0 0 0 chr5 51084696 51084720 -101452539 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1 974 892 319 76 42 chr5 51084818 51085136 -101452123 + ORR1D2 LTR MaLR 1 341 -29 1 974 3034 42 0 0 chr5 51085136 51085490 -101451769 - IAPEY2_LTR LTR ERVK -3 354 1 1 974 5475 26 3 0 chr5 51085492 51086134 -101451125 + L1Md_A LINE L1 5939 6582 0 1 974 892 319 76 42 chr5 51086134 51086169 -101451090 + ORR1D2 LTR MaLR 342 369 -1 1 974 27 49 0 0 chr5 51087173 51087214 -101450045 + AT_rich Low_complexity Low_complexity 1 41 0 1 974 792 287 151 20 chr5 51087881 51088228 -101449031 + Lx9 LINE L1 7130 7521 -123 1 974 363 44 0 0 chr5 51088228 51088273 -101448986 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 974 792 287 151 20 chr5 51088273 51088376 -101448883 + Lx9 LINE L1 7522 7639 -5 1 974 261 163 0 0 chr5 51089746 51089795 -101447464 + (CAG)n Simple_repeat Simple_repeat 2 50 0 1 974 195 42 0 0 chr5 51089943 51089967 -101447292 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 974 418 268 198 10 chr5 51090711 51090903 -101446356 - L2 LINE L2 -703 2716 2489 1 974 196 359 55 28 chr5 51091002 51091015 -101446244 - MIR SINE MIR -58 150 139 1 974 333 0 0 0 chr5 51091015 51091052 -101446207 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 974 199 328 68 13 chr5 51091052 51091147 -101446112 - MIRc SINE MIR -70 138 39 1 974 1137 179 23 9 chr5 51092117 51092331 -101444928 - URR1B DNA MER1_type -6 219 3 1 974 236 376 41 12 chr5 51092435 51092607 -101444652 + MIR SINE MIR 82 258 -4 1 974 327 335 102 32 chr5 51092584 51092800 -101444459 - MIR SINE MIR -21 241 11 1 974 1161 48 7 0 chr5 51092873 51093020 -101444239 + B1_Mus1 SINE Alu 1 148 0 1 974 23 0 0 0 chr5 51093020 51093043 -101444216 + AT_rich Low_complexity Low_complexity 1 23 0 1 974 302 0 0 26 chr5 51093234 51093273 -101443986 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1 974 274 138 36 216 chr5 51094452 51094674 -101442585 - RMER17C LTR ERVK -134 276 95 1 974 522 0 0 0 chr5 51095598 51095656 -101441603 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 974 478 311 125 55 chr5 51096440 51096807 -101440452 - L2a LINE L2 0 3426 3034 1 974 182 62 31 0 chr5 51097478 51097510 -101439749 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 974 1160 64 0 0 chr5 51097513 51097653 -101439606 - B1_Mm SINE Alu -6 141 2 1 974 627 120 0 0 chr5 51098906 51099023 -101438236 + (TC)n Simple_repeat Simple_repeat 2 118 0 1 974 2560 264 138 6 chr5 51099570 51100407 -101436852 + Lx6 LINE L1 6306 7446 -14 1 974 306 327 12 12 chr5 51100399 51100563 -101436696 - L1M5 LINE L1 -346 5818 5655 1 974 555 317 150 3 chr5 51100656 51100976 -101436283 - Lx8 LINE L1 0 7473 7107 1 974 554 329 98 13 chr5 51101168 51101393 -101435866 + MTEa LTR MaLR 123 366 -13 1 974 475 340 74 18 chr5 51101391 51101695 -101435564 + MLT2D LTR ERVL 24 343 -121 1 974 253 320 73 16 chr5 51101903 51102027 -101435232 + ORR1D2 LTR MaLR 5 135 -235 1 974 2142 151 90 19 chr5 51102131 51102544 -101434715 + RLTR20B2 LTR ERVK 16 457 -103 1 974 374 188 10 0 chr5 51102552 51102648 -101434611 + (TG)n Simple_repeat Simple_repeat 2 98 0 1 974 2455 34 0 7 chr5 51102669 51102968 -101434291 - L1Md_F2 LINE L1 -19 6563 6267 1 974 1556 156 43 25 chr5 51102966 51103243 -101434016 + Lx4A LINE L1 6777 7058 0 1 974 537 310 100 12 chr5 51103306 51103705 -101433554 - L1M4 LINE L1 -2191 3955 3522 1 974 710 196 45 0 chr5 51104010 51104143 -101433116 - B1_Mus1 SINE Alu 0 148 10 1 974 5528 240 54 22 chr5 51104166 51105506 -101431753 + Lx6 LINE L1 5810 7191 -269 1 974 666 203 23 0 chr5 51105521 51105649 -101431610 - B1_Mm SINE Alu -7 140 10 1 974 1233 205 31 49 chr5 51105659 51105946 -101431313 + Lx6 LINE L1 7179 7460 0 1 974 415 271 24 79 chr5 51105965 51106107 -101431152 - L1M4 LINE L1 -2865 3281 3101 1 974 1097 83 14 0 chr5 51106107 51106252 -101431007 - B1_Mus1 SINE Alu 0 148 2 1 974 415 298 153 42 chr5 51106252 51106540 -101430719 - L1M4 LINE L1 -2980 3166 2854 1 974 22 56 0 0 chr5 51106577 51106613 -101430646 + AT_rich Low_complexity Low_complexity 1 36 0 1 974 234 0 0 0 chr5 51106855 51106881 -101430378 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 974 1079 112 6 0 chr5 51106882 51107061 -101430198 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 974 234 91 0 0 chr5 51107061 51107093 -101430166 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 974 465 286 22 8 chr5 51108047 51108181 -101429078 + B4A SINE B4 16 151 -141 1 974 935 121 19 13 chr5 51108191 51108340 -101428919 + L1_Mus2 LINE L1 6396 6546 -20 1 974 881 69 131 0 chr5 51108340 51108470 -101428789 + B1_Mm SINE Alu 1 147 0 1 974 935 121 19 13 chr5 51108470 51108542 -101428717 + L1_Mus2 LINE L1 6547 6566 0 1 974 188 86 0 28 chr5 51108584 51108620 -101428639 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 974 246 220 17 0 chr5 51108847 51108906 -101428353 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 974 484 322 25 38 chr5 51108917 51109075 -101428184 - RSINE1 SINE B4 -4 161 6 1 974 345 82 0 0 chr5 51110111 51110160 -101427099 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 974 261 119 0 0 chr5 51110160 51110202 -101427057 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 974 1291 201 214 10 chr5 51110247 51110658 -101426601 + Lx9 LINE L1 7148 7642 -2 1 974 11528 118 29 24 chr5 51111015 51114005 -101423254 - Lx3C LINE L1 -80 6896 3903 1 974 676 213 297 64 chr5 51114178 51114348 -101422911 + ORR1D1 LTR MaLR 1 166 -208 1 974 603 0 0 0 chr5 51114348 51114415 -101422844 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 974 676 213 297 64 chr5 51114415 51114540 -101422719 + ORR1D1 LTR MaLR 167 364 -10 1 974 236 341 0 64 chr5 51114546 51114640 -101422619 - MLT1E1A LTR MaLR -215 465 378 1 974 204 40 0 0 chr5 51114651 51114676 -101422583 + (T)n Simple_repeat Simple_repeat 1 25 0 1 974 414 0 0 0 chr5 51114955 51115001 -101422258 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 974 479 235 24 65 chr5 51115033 51115156 -101422103 + RSINE1 SINE B4 36 153 -12 1 974 313 350 94 33 chr5 51116087 51116332 -101420927 + LTR16C LTR ERVL 230 489 0 1 121 2514 268 105 29 chr5 51117317 51118476 -101418783 - L1_Rod LINE L1 -108 5739 4493 1 975 197 118 0 73 chr5 51120425 51120507 -101416752 + A-rich Low_complexity Low_complexity 3 78 0 1 975 307 277 52 112 chr5 51120583 51120815 -101416444 - MamRep434 DNA TcMar -22 404 187 1 975 237 258 0 46 chr5 51120931 51120996 -101416263 - MTE2b LTR MaLR -40 339 278 1 975 1212 61 0 0 chr5 51121318 51121466 -101415793 + B1_Mus1 SINE Alu 1 148 0 1 975 201 184 26 0 chr5 51121505 51121543 -101415716 + GA-rich Low_complexity Low_complexity 3 41 0 1 975 408 274 63 45 chr5 51121619 51121730 -101415529 + B3A SINE B2 1 113 -85 1 975 2291 125 9 3 chr5 51121728 51122072 -101415187 + RLTR15 LTR ERVK 14 359 0 1 975 224 352 56 22 chr5 51122072 51122160 -101415099 + B3 SINE B2 96 186 -30 1 975 312 27 0 0 chr5 51122167 51122204 -101415055 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 975 396 71 0 0 chr5 51122299 51122355 -101414904 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 1 975 5979 78 4 5 chr5 51123829 51124671 -101412588 + L1_Mus1 LINE L1 5725 6565 -2 1 975 991 318 28 62 chr5 51127710 51128207 -101409052 + Lx8 LINE L1 6816 7295 -178 1 975 963 300 94 31 chr5 51128429 51128942 -101408317 - Lx8 LINE L1 -6 7467 6923 2 975 873 308 139 8 chr5 51128942 51129338 -101407921 + Lx8 LINE L1 6451 6898 -575 2 975 635 291 63 5 chr5 51129617 51129807 -101407452 - MIR3 SINE MIR -2 206 6 2 975 323 324 94 51 chr5 51129807 51129956 -101407303 - MamRep434 DNA TcMar -155 271 105 2 975 186 43 0 0 chr5 51129956 51129979 -101407280 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2 975 323 324 94 51 chr5 51129979 51130083 -101407176 - MamRep434 DNA TcMar -322 104 7 2 975 188 353 56 45 chr5 51130110 51130199 -101407060 - L2b LINE L2 -32 3343 3254 2 975 223 182 0 0 chr5 51130747 51130791 -101406468 + T-rich Low_complexity Low_complexity 1 44 0 2 975 182 128 26 0 chr5 51131611 51131650 -101405609 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 975 25 65 0 0 chr5 51131690 51131736 -101405523 + AT_rich Low_complexity Low_complexity 1 46 0 2 975 298 369 64 0 chr5 51132131 51132288 -101404971 + MIR SINE MIR 76 242 -20 2 975 439 270 113 0 chr5 51133012 51133127 -101404132 - Tigger15a DNA TcMar -190 525 398 2 975 333 100 0 0 chr5 51133491 51133541 -101403718 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 975 24 0 0 0 chr5 51133550 51133574 -101403685 + AT_rich Low_complexity Low_complexity 1 24 0 2 975 212 344 50 40 chr5 51133587 51133687 -101403572 - L2a LINE L2 -41 3385 3285 2 975 381 271 65 9 chr5 51134341 51134449 -101402810 + MER5B DNA MER1_type 3 116 -62 2 975 634 183 8 38 chr5 51134507 51134638 -101402621 + MER5B DNA MER1_type 1 127 -51 2 975 203 162 0 0 chr5 51134640 51134677 -101402582 + A-rich Low_complexity Low_complexity 2 38 0 2 975 216 333 32 0 chr5 51134695 51134758 -101402501 - L2c LINE L2 -49 3338 3274 2 975 334 269 13 0 chr5 51134867 51134945 -101402314 + MER81 DNA AcHobo 30 108 -6 2 975 260 296 82 0 chr5 51135833 51135931 -101401328 + ORR1E LTR MaLR 19 124 -235 2 975 871 284 91 11 chr5 51136362 51136626 -101400633 - B4A SINE B4 0 292 8 2 975 409 311 135 58 chr5 51136855 51137114 -101400145 - L1MC3 LINE L1 -710 7075 6797 2 975 247 345 53 78 chr5 51137936 51138219 -101399040 + RMER17D2 LTR ERVK 155 430 -379 2 975 642 338 154 8 chr5 51138243 51138866 -101398393 + L1MCa LINE L1 1 714 -5794 2 975 283 272 362 8 chr5 51140270 51140516 -101396743 + L1_Rod LINE L1 448 780 -6392 2 975 249 57 0 0 chr5 51140806 51140841 -101396418 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 975 327 179 0 0 chr5 51140840 51140907 -101396352 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 975 198 238 48 0 chr5 51143572 51143614 -101393645 + MIR SINE MIR 76 119 -89 2 975 22 0 0 0 chr5 51144095 51144117 -101393142 + AT_rich Low_complexity Low_complexity 1 22 0 2 975 22 0 0 0 chr5 51145028 51145050 -101392209 + AT_rich Low_complexity Low_complexity 1 22 0 2 975 678 309 78 42 chr5 51145795 51146156 -101391103 - MER82 DNA MER2_type -1 652 279 2 975 367 318 30 22 chr5 51146252 51146387 -101390872 + MLT2B3 LTR ERVL 194 329 -388 2 975 476 346 6 12 chr5 51146504 51146665 -101390594 + MLT2B3 LTR ERVL 340 499 -171 2 975 380 292 8 34 chr5 51146762 51146879 -101390380 - MER82 DNA MER2_type -532 121 8 2 975 369 279 21 6 chr5 51147539 51147677 -101389582 + MLT1A0 LTR MaLR 265 407 -1 2 975 1587 21 0 0 chr5 51147742 51147929 -101389330 + ORR1A0 LTR MaLR 160 346 0 2 975 740 306 14 59 chr5 51148218 51148506 -101388753 - B4A SINE B4 -16 276 2 2 975 205 414 46 27 chr5 51148838 51149250 -101388009 + L2 LINE L2 2658 3077 -342 2 975 701 240 153 0 chr5 51149454 51149637 -101387622 - B3 SINE B2 -5 211 1 2 975 338 277 45 23 chr5 51149953 51150072 -101387187 + MTE2b LTR MaLR 247 368 -2 2 975 670 350 38 72 chr5 51150075 51150395 -101386864 - LTR16C LTR ERVL -39 450 142 2 975 2104 270 78 49 chr5 51150653 51150760 -101386499 + Lx9 LINE L1 6172 6317 -1327 2 975 315 0 0 0 chr5 51150760 51150795 -101386464 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 975 180 0 0 0 chr5 51150795 51150814 -101386445 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 975 2104 270 78 49 chr5 51150814 51151474 -101385785 + Lx9 LINE L1 6318 6988 -656 2 975 468 0 0 0 chr5 51151474 51151526 -101385733 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 975 2104 270 78 49 chr5 51151526 51151609 -101385650 + Lx9 LINE L1 6989 7047 -597 2 975 502 302 45 0 chr5 51151681 51151860 -101385399 - Lx9 LINE L1 -978 6666 6480 2 975 491 301 70 25 chr5 51151848 51152049 -101385210 + Lx9 LINE L1 7079 7288 -356 2 975 427 295 80 23 chr5 51152066 51152330 -101384929 + Lx9 LINE L1 7341 7619 -25 2 975 22 0 0 0 chr5 51152331 51152353 -101384906 + AT_rich Low_complexity Low_complexity 1 22 0 2 975 1153 292 107 27 chr5 51152365 51152850 -101384409 + MT2A LTR ERVL 10 533 0 2 975 1037 249 85 47 chr5 51153449 51153812 -101383447 + MTE2b LTR MaLR 3 379 0 2 975 516 296 76 0 chr5 51155371 51155503 -101381756 - B3A SINE B2 -56 142 1 2 975 606 28 0 0 chr5 51155554 51155626 -101381633 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 975 377 283 63 89 chr5 51155875 51156065 -101381194 + L1ME3A LINE L1 5725 5909 -264 2 975 8031 143 35 11 chr5 51156392 51157830 -101379429 + Lx4A LINE L1 5587 7058 0 2 975 477 326 116 26 chr5 51158545 51158813 -101378446 - B4A SINE B4 0 292 1 2 975 307 250 14 0 chr5 51159236 51159308 -101377951 + MLT1A0 LTR MaLR 291 363 -2 2 975 361 355 26 13 chr5 51159562 51159796 -101377463 - Lx8 LINE L1 -307 7166 6930 2 975 842 174 4 8 chr5 51160250 51160503 -101376756 + CT-rich Low_complexity Low_complexity 1 251 0 2 975 918 144 22 6 chr5 51162015 51162196 -101375063 - L1_Mus4 LINE L1 -4 6632 6449 2 975 6053 151 25 24 chr5 51162223 51163535 -101373724 - L1_Mus4 LINE L1 -642 5994 4670 2 975 7069 71 14 5 chr5 51163534 51165013 -101372246 - L1Md_F2 LINE L1 -12 6570 5079 2 975 350 43 0 0 chr5 51165012 51165058 -101372201 + L1_Mur1 LINE L1 3666 3711 -2175 2 975 641 106 18 0 chr5 51165072 51165185 -101372074 - L1Md_F2 LINE L1 -1201 4682 4568 2 975 389 180 0 11 chr5 51165474 51165564 -101371695 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 975 7652 37 0 2 chr5 51165897 51166810 -101370449 + L1Md_F2 LINE L1 5670 6580 -2 2 975 34 72 0 0 chr5 51166820 51166889 -101370370 + AT_rich Low_complexity Low_complexity 1 69 0 2 975 564 275 143 27 chr5 51167277 51167655 -101369604 + MT2A LTR ERVL 13 455 -78 2 975 520 116 41 8 chr5 51167664 51167786 -101369473 + CT-rich Low_complexity Low_complexity 1 126 0 2 975 189 0 0 0 chr5 51167879 51167900 -101369359 + (T)n Simple_repeat Simple_repeat 1 21 0 2 975 366 23 0 0 chr5 51168014 51168057 -101369202 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 975 376 327 57 30 chr5 51168506 51168736 -101368523 + L1MB1 LINE L1 5529 5764 -404 2 975 210 286 78 16 chr5 51168883 51168947 -101368312 + ID4_ SINE ID 14 81 -2 2 975 497 312 72 0 chr5 51168968 51169205 -101368054 + L1MB1 LINE L1 5782 6035 -133 2 975 537 28 9 69 chr5 51170201 51170317 -101366942 + (CAAAC)n Simple_repeat Simple_repeat 2 110 0 2 975 180 0 0 0 chr5 51171722 51171742 -101365517 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 975 498 17 0 0 chr5 51172045 51172104 -101365155 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 975 444 110 0 35 chr5 51172533 51172618 -101364641 + L1Md_F2 LINE L1 6501 6582 0 2 975 22 56 0 0 chr5 51172711 51172747 -101364512 + AT_rich Low_complexity Low_complexity 1 36 0 2 975 286 282 23 12 chr5 51172790 51172876 -101364383 - PB1D9 SINE Alu 0 120 34 2 975 234 0 0 0 chr5 51173578 51173604 -101363655 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 975 201 39 0 0 chr5 51173604 51173629 -101363630 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 975 204 40 0 0 chr5 51174512 51174537 -101362722 + (T)n Simple_repeat Simple_repeat 1 25 0 2 975 193 91 22 43 chr5 51174798 51174844 -101362415 + T-rich Low_complexity Low_complexity 2 46 0 2 975 183 156 0 0 chr5 51175550 51175582 -101361677 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 975 5446 75 5 20 chr5 51177488 51178238 -101359021 + L1_Mus1 LINE L1 5829 6567 0 2 975 554 353 16 0 chr5 51178478 51178665 -101358594 + B3A SINE B2 1 190 -8 2 975 206 240 0 26 chr5 51179311 51179388 -101357871 + (TATG)n Simple_repeat Simple_repeat 1 75 0 2 975 281 300 18 26 chr5 51179717 51179830 -101357429 + CT-rich Low_complexity Low_complexity 1 112 0 2 975 477 0 0 0 chr5 51180417 51180470 -101356789 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 975 405 0 0 0 chr5 51180753 51180798 -101356461 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 975 4647 56 0 0 chr5 51180860 51181531 -101355728 - L1Md_F2 LINE L1 -603 5979 5309 2 975 3872 92 19 25 chr5 51181531 51182102 -101355157 + L1Md_F2 LINE L1 5992 6559 -23 2 975 249 33 0 0 chr5 51182102 51182132 -101355127 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2 975 21 36 0 0 chr5 51182218 51182246 -101355013 + AT_rich Low_complexity Low_complexity 1 28 0 2 975 760 311 121 22 chr5 51184159 51184514 -101352745 - MLT1A1 LTR MaLR 0 408 19 2 975 209 335 43 31 chr5 51185104 51185254 -101352005 - MIRc SINE MIR -89 173 25 2 975 392 0 21 0 chr5 51186043 51186091 -101351168 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 975 23 0 0 0 chr5 51186812 51186835 -101350424 + AT_rich Low_complexity Low_complexity 1 23 0 2 975 6923 79 15 34 chr5 51187642 51188625 -101348634 - L1_Mus2 LINE L1 0 6566 5602 2 975 486 163 0 0 chr5 51188564 51188653 -101348606 + Lx3C LINE L1 5571 5659 -1317 2 975 252 141 12 37 chr5 51188737 51188818 -101348441 + (TCTCTG)n Simple_repeat Simple_repeat 4 82 0 2 975 309 51 0 0 chr5 51188833 51188872 -101348387 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 975 635 316 25 43 chr5 51188921 51189199 -101348060 - B4A SINE B4 -19 273 1 2 975 316 354 0 0 chr5 51189233 51189329 -101347930 - MLT1B LTR MaLR -244 146 51 2 975 196 234 32 138 chr5 51189482 51189576 -101347683 - L3 LINE CR1 -3695 794 711 2 975 538 304 101 0 chr5 51190075 51190213 -101347046 + B3A SINE B2 2 153 -45 2 975 525 32 0 0 chr5 51190217 51190280 -101346979 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 975 192 40 0 0 chr5 51190280 51190304 -101346955 + (CAGAGA)n Simple_repeat Simple_repeat 4 28 0 2 975 452 242 37 45 chr5 51191221 51191355 -101345904 + MLT1A1 LTR MaLR 3 135 -273 2 975 27 0 0 0 chr5 51191392 51191419 -101345840 + AT_rich Low_complexity Low_complexity 1 27 0 3 975 396 299 109 6 chr5 51192517 51192682 -101344577 + B4 SINE B4 70 251 -41 3 975 1104 288 81 41 chr5 51193097 51193713 -101343546 - L1MC3 LINE L1 -21 7764 7124 3 975 343 302 34 44 chr5 51193763 51193967 -101343292 + L1MC3 LINE L1 6170 6371 -1414 3 975 271 163 0 42 chr5 51194142 51194238 -101343021 + (TA)n Simple_repeat Simple_repeat 2 93 0 3 975 822 133 19 6 chr5 51194911 51195070 -101342189 + CT-rich Low_complexity Low_complexity 3 163 0 3 975 300 27 0 0 chr5 51195312 51195349 -101341910 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 3 975 223 330 42 83 chr5 51195369 51195465 -101341794 + PB1D9 SINE Alu 1 92 -28 3 975 232 189 19 0 chr5 51195579 51195632 -101341627 + T-rich Low_complexity Low_complexity 2 55 0 3 975 24 53 0 0 chr5 51195641 51195679 -101341580 + AT_rich Low_complexity Low_complexity 1 38 0 3 975 323 318 18 0 chr5 51195814 51195924 -101341335 + Lx7 LINE L1 7208 7319 -377 3 975 210 139 0 44 chr5 51196004 51196049 -101341210 + T-rich Low_complexity Low_complexity 3 45 0 3 975 1316 95 11 0 chr5 51196139 51196328 -101340931 - B2_Mm1t SINE B2 -2 191 1 3 975 37 0 0 0 chr5 51196329 51196366 -101340893 + AT_rich Low_complexity Low_complexity 1 37 0 3 975 5349 123 32 1 chr5 51197313 51198153 -101339106 - Lx LINE L1 -3 6651 5786 3 975 11159 180 17 45 chr5 51198165 51198429 -101338830 - L1VL4 LINE L1 -1788 4095 3807 3 975 2025 57 0 70 chr5 51198429 51198730 -101338529 - L1Md_F2 LINE L1 -6 6576 6297 3 975 11489 126 9 51 chr5 51198730 51201029 -101336230 - L1VL4 LINE L1 -2077 3806 1604 3 975 7850 39 1 4 chr5 51201028 51201975 -101335284 - L1Md_F2 LINE L1 -12 6570 5627 3 975 3937 128 17 19 chr5 51201975 51202770 -101334489 - L1VL4 LINE L1 -2319 1595 815 3 975 3259 18 39 0 chr5 51202770 51203151 -101334108 - MTA_Mm LTR MaLR 0 396 1 3 975 9075 34 3 2 chr5 51203153 51204248 -101333011 - MTA_Mm-int LTR MaLR -2 1096 1 3 975 3259 18 39 0 chr5 51204248 51204629 -101332630 - MTA_Mm LTR MaLR 0 396 1 3 975 3937 178 11 37 chr5 51204629 51204888 -101332371 - L1VL4 LINE L1 -5843 814 550 3 975 22 56 0 0 chr5 51205440 51205476 -101331783 + AT_rich Low_complexity Low_complexity 1 36 0 3 975 239 278 57 57 chr5 51205821 51205962 -101331297 - L1M4 LINE L1 -2012 4134 3994 3 975 190 0 67 0 chr5 51206010 51206040 -101331219 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 975 736 286 88 58 chr5 51206866 51207208 -101330051 - RMER13A LTR ERVK -495 365 14 3 975 2784 39 3 0 chr5 51207278 51207612 -101329647 + L1Md_F2 LINE L1 6236 6570 -12 3 975 22 80 0 0 chr5 51207658 51207708 -101329551 + AT_rich Low_complexity Low_complexity 1 50 0 3 975 1685 55 0 18 chr5 51207780 51208002 -101329257 - L1Md_F2 LINE L1 -11 6571 6354 3 975 2297 64 37 0 chr5 51208002 51208299 -101328960 + L1Md_F2 LINE L1 6059 6366 -216 3 975 305 287 105 82 chr5 51208300 51208471 -101328788 - L1M3 LINE L1 -808 5335 5161 3 975 405 280 15 0 chr5 51208661 51208793 -101328466 - L1M3 LINE L1 -1229 4911 4778 3 975 511 372 29 61 chr5 51209383 51209661 -101327598 + B4A SINE B4 24 292 0 3 975 283 277 0 11 chr5 51209723 51209818 -101327441 - L1MC LINE L1 -1561 4585 4492 3 975 904 169 58 0 chr5 51209834 51210006 -101327253 + URR1A DNA MER1_type 45 226 0 3 975 3154 293 99 28 chr5 51210013 51211084 -101326175 - L1MC LINE L1 -1649 4497 3325 3 975 2314 181 14 7 chr5 51211084 51211502 -101325757 - MTC LTR MaLR 0 421 1 3 975 3154 283 93 26 chr5 51211502 51212586 -101324673 - L1MC LINE L1 -2822 3324 2173 3 975 7586 35 0 0 chr5 51212988 51213889 -101323370 - L1Md_T LINE L1 0 6582 5682 3 975 976 291 12 62 chr5 51213967 51214360 -101322899 - Lx9 LINE L1 -1731 5913 5501 3 975 2595 287 13 59 chr5 51214387 51215179 -101322080 - RMER1C Other Other -6 1336 582 3 975 5043 239 91 58 chr5 51215180 51215605 -101321654 - Lx7 LINE L1 -335 7361 6902 3 975 515 29 14 0 chr5 51215605 51215674 -101321585 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 975 477 0 0 0 chr5 51215674 51215726 -101321533 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 975 5043 239 91 58 chr5 51215726 51216296 -101320963 - Lx7 LINE L1 -795 6901 6360 3 975 2506 182 31 68 chr5 51216296 51216903 -101320356 + RMER4B LTR ERVK 1 585 0 3 975 5043 216 69 77 chr5 51216903 51217964 -101319295 - Lx7 LINE L1 -1337 6359 5289 3 975 624 151 8 0 chr5 51217964 51218090 -101319169 - Lx2 LINE L1 -1 6996 6870 3 975 2353 200 54 90 chr5 51218090 51218127 -101319132 - Lx7 LINE L1 -592 5288 5241 3 975 1174 178 69 95 chr5 51218153 51218531 -101318728 - Lx7 LINE L1 -2574 3306 2939 3 975 21 0 0 0 chr5 51218538 51218559 -101318700 + AT_rich Low_complexity Low_complexity 1 21 0 3 975 242 57 0 0 chr5 51218562 51218597 -101318662 - Lx7 LINE L1 -3041 2839 2805 3 975 1385 205 17 23 chr5 51218597 51218689 -101318570 + RLTR10E LTR ERVK 1 94 -217 3 975 3717 41 0 11 chr5 51218689 51219155 -101318104 + L1Md_F2 LINE L1 6122 6582 0 3 975 1385 205 17 23 chr5 51219155 51219362 -101317897 + RLTR10E LTR ERVK 95 298 -13 3 975 2110 161 31 12 chr5 51219380 51219801 -101317458 - Lx7 LINE L1 -3070 2810 2382 3 975 1289 264 47 6 chr5 51219797 51220140 -101317119 - Lx7 LINE L1 -7035 693 337 3 975 2040 279 97 82 chr5 51220220 51221093 -101316166 - L1_Mur3 LINE L1 -644 5236 4438 3 975 1378 184 109 71 chr5 51221093 51221461 -101315798 - ORR1C2 LTR MaLR -2 382 1 3 975 2040 279 97 82 chr5 51221461 51222029 -101315230 - L1_Mur3 LINE L1 -1443 4437 3773 3 975 546 264 105 45 chr5 51222062 51222375 -101314884 - L1_Mur3 LINE L1 -2821 3059 2728 3 975 811 272 60 62 chr5 51222377 51222730 -101314529 + L1_Mur3 LINE L1 2533 2884 -2996 3 975 929 65 16 0 chr5 51222917 51223040 -101314219 + B1_Mus1 SINE Alu 10 134 -14 3 975 3489 51 13 4 chr5 51223040 51223492 -101313767 - L1Md_F3 LINE L1 0 6584 6129 3 975 240 86 0 0 chr5 51223623 51223658 -101313601 + (CAT)n Simple_repeat Simple_repeat 2 36 0 3 975 1058 234 97 30 chr5 51224158 51224488 -101312771 - Lx2B LINE L1 0 7000 6649 3 975 329 319 42 7 chr5 51224629 51224771 -101312488 - L1MCa LINE L1 -6344 164 18 3 975 337 283 3 8 chr5 51224785 51224932 -101312327 - L1MEf LINE L1 -4707 1708 1512 3 975 434 171 242 25 chr5 51225797 51225917 -101311342 + B1_Mus1 SINE Alu 2 147 -1 3 975 887 290 133 22 chr5 51225961 51226321 -101310938 - MTD LTR MaLR -2 417 18 3 975 24 91 0 0 chr5 51226764 51226830 -101310429 + AT_rich Low_complexity Low_complexity 1 66 0 3 975 668 298 0 11 chr5 51228118 51228301 -101308958 + B3A SINE B2 2 182 -16 3 975 324 0 0 0 chr5 51228316 51228352 -101308907 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 975 234 125 0 0 chr5 51228998 51229046 -101308213 + (CCAA)n Simple_repeat Simple_repeat 4 51 0 3 975 3805 67 2 4 chr5 51231219 51231711 -101305548 + L1Md_F2 LINE L1 6076 6566 -16 3 975 298 292 115 0 chr5 51231794 51231907 -101305352 + B3A SINE B2 8 133 -65 3 975 2778 47 6 0 chr5 51232138 51232482 -101304777 - ORR1A0 LTR MaLR 0 346 1 3 975 13601 64 6 1 chr5 51232482 51234265 -101302994 - ORR1A0-int LTR MaLR 0 1792 1 3 975 2746 44 24 0 chr5 51234265 51234603 -101302656 - ORR1A0 LTR MaLR 0 346 1 3 975 345 47 0 0 chr5 51234638 51234681 -101302578 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 975 273 119 0 0 chr5 51234716 51234758 -101302501 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 975 279 0 0 0 chr5 51234758 51234788 -101302471 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 975 300 207 61 0 chr5 51234791 51234873 -101302386 - Lx9 LINE L1 -38 7606 7520 3 975 235 0 0 54 chr5 51234877 51234914 -101302345 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 975 339 85 0 0 chr5 51234962 51235009 -101302250 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 975 747 335 40 76 chr5 51235015 51235491 -101301768 - MT2B LTR ERVL -40 561 2 3 975 381 216 68 0 chr5 51235492 51235580 -101301679 - L1_Rod LINE L1 -30 5817 5724 3 975 487 219 85 8 chr5 51235574 51235703 -101301556 + Lx9 LINE L1 7321 7459 -185 3 975 656 107 0 10 chr5 51235703 51235807 -101301452 + (TA)n Simple_repeat Simple_repeat 2 104 0 3 975 296 186 55 78 chr5 51235811 51235939 -101301320 + Lx9 LINE L1 7520 7644 0 3 975 180 0 0 0 chr5 51235962 51235982 -101301277 + (A)n Simple_repeat Simple_repeat 1 20 0 3 975 186 43 0 0 chr5 51239200 51239223 -101298036 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3 975 717 97 22 0 chr5 51239286 51239420 -101297839 + (CA)n Simple_repeat Simple_repeat 2 138 0 3 975 369 0 0 0 chr5 51239420 51239460 -101297799 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 975 40962 7 0 0 chr5 51240199 51246775 -101290484 - L1Md_A LINE L1 0 6582 7 3 975 276 30 0 0 chr5 51246815 51246848 -101290411 + (T)n Simple_repeat Simple_repeat 1 33 0 3 975 216 242 0 31 chr5 51247737 51247801 -101289458 + CT-rich Low_complexity Low_complexity 1 62 0 3 975 441 103 0 0 chr5 51248008 51248076 -101289183 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 121 4570 142 27 5 chr5 51248769 51249510 -101287749 - Lx4A LINE L1 -2 7056 6300 3 976 267 333 12 12 chr5 51249698 51249780 -101287479 - MIR SINE MIR -119 143 62 3 976 1161 249 108 34 chr5 51249831 51250184 -101287075 + MTE2b LTR MaLR 1 379 0 3 976 1019 197 32 9 chr5 51250500 51250720 -101286539 - URR1B DNA MER1_type 0 225 1 3 976 418 156 122 20 chr5 51251559 51251657 -101285602 - Lx9 LINE L1 -1 7643 7536 3 976 399 41 0 0 chr5 51251662 51251711 -101285548 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 976 780 197 0 0 chr5 51251758 51251895 -101285364 - Lx9 LINE L1 -262 7382 7246 3 976 24 0 0 0 chr5 51252054 51252078 -101285181 + AT_rich Low_complexity Low_complexity 1 24 0 3 976 207 0 0 0 chr5 51255180 51255203 -101282056 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 976 1556 233 28 70 chr5 51255391 51255770 -101281489 - RMER15 LTR ERVL 0 575 213 3 976 692 211 7 14 chr5 51255770 51255914 -101281345 - URR1B DNA MER1_type 0 225 83 3 976 255 146 0 0 chr5 51255964 51256005 -101281254 - RMER15 LTR ERVL -355 220 180 3 976 809 215 57 48 chr5 51256040 51256250 -101281009 - RMER15 LTR ERVL -360 215 4 3 976 366 159 0 0 chr5 51257345 51257414 -101279845 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 976 23 0 0 0 chr5 51257415 51257438 -101279821 + AT_rich Low_complexity Low_complexity 1 23 0 3 976 365 308 48 40 chr5 51258356 51258481 -101278778 + L2b LINE L2 3250 3375 0 3 976 185 176 38 38 chr5 51258568 51258621 -101278638 + L3 LINE CR1 165 217 -4272 3 976 456 19 0 0 chr5 51259188 51259241 -101278018 + (TTTC)n Simple_repeat Simple_repeat 1 53 0 3 976 202 274 148 41 chr5 51260051 51260173 -101277086 - MIRb SINE MIR -35 233 99 3 976 2898 294 95 71 chr5 51262226 51263693 -101273566 - Lx7 LINE L1 -274 7422 5905 3 976 6571 157 35 30 chr5 51263693 51264938 -101272321 + Lx4B LINE L1 5794 7044 -14 3 976 716 11 23 0 chr5 51264938 51265026 -101272233 + (GAAA)n Simple_repeat Simple_repeat 4 93 0 3 976 606 63 0 0 chr5 51265026 51265104 -101272155 + (GGGA)n Simple_repeat Simple_repeat 2 80 0 3 976 2898 294 95 71 chr5 51265104 51265154 -101272105 - Lx7 LINE L1 -1792 5904 5868 3 976 216 0 0 0 chr5 51265884 51265908 -101271351 + (A)n Simple_repeat Simple_repeat 1 24 0 3 976 1996 152 224 25 chr5 51265951 51266425 -101270834 + RLTR12A LTR ERVK 1 568 0 3 976 279 93 0 0 chr5 51266489 51266532 -101270727 + (T)n Simple_repeat Simple_repeat 1 43 0 4 976 334 344 83 19 chr5 51267153 51267369 -101269890 - L3 LINE CR1 -265 4224 3995 4 976 364 212 7 29 chr5 51267879 51268015 -101269244 + (TA)n Simple_repeat Simple_repeat 2 134 0 4 976 950 324 31 51 chr5 51268017 51269060 -101268199 - Lx7 LINE L1 -366 5934 4904 3 976 369 0 0 0 chr5 51269062 51269103 -101268156 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 4 976 699 284 27 11 chr5 51269103 51269288 -101267971 - B3 SINE B2 -20 196 9 4 976 282 320 23 17 chr5 51269333 51269505 -101267754 - L1_Mm LINE L1 -1262 4621 4449 4 976 24 53 0 0 chr5 51269595 51269633 -101267626 + AT_rich Low_complexity Low_complexity 1 38 0 4 976 2568 132 31 0 chr5 51269644 51270060 -101267199 + L1_Mus4 LINE L1 6202 6630 -6 4 976 225 0 0 0 chr5 51270074 51270099 -101267160 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4 976 723 318 46 10 chr5 51270197 51270607 -101266652 - Lx7 LINE L1 -1826 4314 3890 3 976 2537 20 7 0 chr5 51271382 51271679 -101265580 + L1Md_F3 LINE L1 6270 6568 -16 4 976 186 43 0 0 chr5 51271683 51271706 -101265553 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 4 976 488 352 106 84 chr5 51271812 51272314 -101264945 - MLT1F2 LTR MaLR -34 526 14 4 976 243 386 49 17 chr5 51272659 51272835 -101264424 + MIR SINE MIR 15 207 -61 4 976 2828 71 42 5 chr5 51274956 51275338 -101261921 - MTA_Mm LTR MaLR 0 396 1 4 976 281 291 44 69 chr5 51277507 51277710 -101259549 + L1M5 LINE L1 5588 5785 -339 4 976 460 271 45 40 chr5 51277833 51278010 -101259249 + B3A SINE B2 3 180 -18 4 976 548 62 41 10 chr5 51278651 51278749 -101258510 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 4 976 249 83 0 0 chr5 51279801 51279837 -101257422 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 976 184 353 0 0 chr5 51279837 51279888 -101257371 - MIR SINE MIR -76 132 82 4 976 1787 219 113 11 chr5 51280529 51280895 -101256364 + RLTR16 LTR ERVK 1 401 -104 4 976 624 81 0 0 chr5 51280895 51280982 -101256277 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 976 1787 219 113 11 chr5 51280982 51281073 -101256186 + RLTR16 LTR ERVK 402 503 -2 4 976 237 33 0 0 chr5 51281547 51281577 -101255682 + (T)n Simple_repeat Simple_repeat 1 30 0 4 976 809 185 13 13 chr5 51281692 51282236 -101255023 + GA-rich Low_complexity Low_complexity 1 543 0 4 976 1274 301 48 15 chr5 51282808 51283170 -101254089 - MTE2b LTR MaLR -2 419 3 4 976 21 0 0 0 chr5 51283710 51283731 -101253528 + AT_rich Low_complexity Low_complexity 1 21 0 4 976 22 35 0 0 chr5 51283919 51283948 -101253311 + AT_rich Low_complexity Low_complexity 1 29 0 4 976 182 271 34 0 chr5 51284773 51284832 -101252427 - L2 LINE L2 -581 2838 2778 4 976 281 204 71 18 chr5 51286486 51286656 -101250603 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 976 308 204 22 77 chr5 51286611 51286792 -101250467 + (TATAA)n Simple_repeat Simple_repeat 3 173 0 4 976 364 195 60 0 chr5 51286796 51286945 -101250314 + (TA)n Simple_repeat Simple_repeat 2 159 0 4 976 291 219 105 47 chr5 51286971 51287057 -101250202 - ID_B1 SINE B4 -10 214 124 4 976 317 211 0 8 chr5 51287631 51287765 -101249494 + (TATATG)n Simple_repeat Simple_repeat 6 138 0 4 976 397 246 0 8 chr5 51287789 51287916 -101249343 - L1_Rod LINE L1 -65 5782 5657 4 976 289 345 92 76 chr5 51287956 51287991 -101249268 + MLT1E1 LTR MaLR 392 430 -224 4 976 2073 96 10 3 chr5 51287991 51288294 -101248965 - L1_Mus4 LINE L1 -2 6634 6330 4 976 289 345 92 76 chr5 51288294 51288509 -101248750 + MLT1E1 LTR MaLR 431 646 -8 4 976 189 0 0 0 chr5 51289405 51289426 -101247833 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 976 4951 139 50 4 chr5 51289726 51290550 -101246709 + Lx2A1 LINE L1 6142 7003 -5 4 976 871 163 96 0 chr5 51290701 51290867 -101246392 - L1_Mur1 LINE L1 -1103 4783 4602 4 976 6259 125 45 4 chr5 51290880 51292085 -101245174 + Lx2 LINE L1 5375 6645 -352 4 976 1277 131 41 18 chr5 51292078 51292296 -101244963 + Lx2 LINE L1 6769 6991 -6 4 976 361 277 0 81 chr5 51292636 51292785 -101244474 + Lx7 LINE L1 7560 7696 0 4 976 197 65 32 0 chr5 51293014 51293045 -101244214 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 976 361 84 28 0 chr5 51293076 51293147 -101244112 + (TTTTTG)n Simple_repeat Simple_repeat 2 74 0 4 976 184 345 0 0 chr5 51293670 51293728 -101243531 + MIRb SINE MIR 25 82 -186 4 976 208 191 48 0 chr5 51293778 51293820 -101243439 + (TCTG)n Simple_repeat Simple_repeat 4 47 0 4 976 185 405 70 32 chr5 51294015 51294173 -101243086 - MER5A DNA MER1_type -25 164 1 4 976 22 0 0 0 chr5 51294294 51294316 -101242943 + AT_rich Low_complexity Low_complexity 1 22 0 4 976 1950 267 25 19 chr5 51294316 51294831 -101242428 - Lx9 LINE L1 -757 6887 6370 4 976 1365 220 38 13 chr5 51294830 51295143 -101242116 + Lx9 LINE L1 6882 7202 -442 4 976 593 259 65 26 chr5 51295538 51295768 -101241491 + Lx9 LINE L1 7209 7447 -197 4 976 547 51 12 12 chr5 51295775 51295855 -101241404 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 976 452 170 60 0 chr5 51295882 51295982 -101241277 + Lx9 LINE L1 7531 7636 -8 4 976 715 294 45 8 chr5 51295991 51296238 -101241021 + Tigger6a DNA MER2_type 74 329 -754 4 976 255 389 24 12 chr5 51296253 51296417 -101240842 - MLT1A LTR MaLR -16 358 193 4 976 370 304 17 67 chr5 51296570 51296750 -101240509 + Tigger6a DNA MER2_type 331 501 -582 4 976 850 257 109 31 chr5 51296723 51297080 -101240179 + Tigger6a DNA MER2_type 617 1001 -82 4 976 712 323 86 50 chr5 51297417 51297801 -101239458 - MLT1C LTR MaLR -3 464 67 4 976 3307 76 22 0 chr5 51298193 51298638 -101238621 + L1_Mus1 LINE L1 6113 6567 0 4 976 502 339 24 14 chr5 51299090 51299377 -101237882 - L1M3 LINE L1 -483 5706 5417 4 976 420 229 16 0 chr5 51299544 51299666 -101237593 - L1M3 LINE L1 -929 5211 5088 4 976 534 259 98 33 chr5 51299706 51300013 -101237246 - L1M3 LINE L1 -1398 4742 4416 4 976 535 319 89 0 chr5 51300072 51300263 -101236996 + B3 SINE B2 9 216 0 4 976 363 266 77 0 chr5 51300515 51300684 -101236575 - L1M4 LINE L1 -957 5189 5008 4 976 327 303 153 0 chr5 51300691 51300945 -101236314 + L1MC LINE L1 3052 3344 -2802 4 976 234 0 0 0 chr5 51301001 51301027 -101236232 + (TTA)n Simple_repeat Simple_repeat 1 26 0 4 976 371 304 40 8 chr5 51301217 51301343 -101235916 + B1F2 SINE Alu 16 145 -4 4 976 233 277 57 32 chr5 51301360 51301483 -101235776 + L1MD LINE L1 4150 4275 -1871 4 976 3791 105 22 5 chr5 51301544 51302099 -101235160 + Lx LINE L1 6085 6648 -6 4 976 2797 42 31 6 chr5 51303261 51303617 -101233642 + RLTR10B2 LTR ERVK 1 365 0 4 976 1655 168 47 6 chr5 51303645 51303963 -101233296 + Lx LINE L1 6318 6648 -6 4 976 233 219 0 0 chr5 51304005 51304046 -101233213 + tRNA-Gly-GGY tRNA tRNA 32 72 -2 4 976 206 229 16 32 chr5 51305740 51305803 -101231456 + GA-rich Low_complexity Low_complexity 1 62 0 4 976 213 194 0 0 chr5 51305761 51305797 -101231462 + polypurine Low_complexity Low_complexity 1 36 0 4 976 186 222 67 0 chr5 51308867 51308912 -101228347 + L3 LINE CR1 3381 3428 -1061 4 976 221 290 43 14 chr5 51309386 51309456 -101227803 - L2b LINE L2 -33 3342 3271 4 976 351 0 0 0 chr5 51310502 51310541 -101226718 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 976 24 0 0 0 chr5 51311941 51311965 -101225294 + AT_rich Low_complexity Low_complexity 1 24 0 4 976 23 0 0 0 chr5 51311990 51312013 -101225246 + AT_rich Low_complexity Low_complexity 1 23 0 4 976 249 139 0 0 chr5 51312732 51312775 -101224484 + (T)n Simple_repeat Simple_repeat 1 43 0 4 976 456 19 0 0 chr5 51316532 51316585 -101220674 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 976 235 388 0 0 chr5 51316651 51316718 -101220541 + RSINE1 SINE B4 51 117 -48 4 976 414 0 0 0 chr5 51316719 51316765 -101220494 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 976 538 30 0 0 chr5 51317114 51317180 -101220079 - L1_Mus3 LINE L1 -726 5912 5847 4 976 3431 64 16 43 chr5 51317181 51317668 -101219591 + L1_Mus2 LINE L1 6092 6565 -1 4 976 688 50 0 0 chr5 51318685 51318785 -101218474 - L1Md_F3 LINE L1 -15 6569 6470 4 976 30 97 0 0 chr5 51318891 51318984 -101218275 + AT_rich Low_complexity Low_complexity 1 93 0 4 976 2687 253 77 26 chr5 51319004 51319845 -101217414 + RCHARR1 DNA MER1_type 90 973 -1 4 976 25 31 0 0 chr5 51320143 51320175 -101217084 + AT_rich Low_complexity Low_complexity 1 32 0 4 976 21 0 0 0 chr5 51320461 51320482 -101216777 + AT_rich Low_complexity Low_complexity 1 21 0 4 976 2280 349 25 24 chr5 51320598 51321272 -101215987 - Lx8 LINE L1 -155 7318 6637 4 976 381 22 0 0 chr5 51321272 51321318 -101215941 + (TAA)n Simple_repeat Simple_repeat 1 46 0 4 976 2280 349 25 24 chr5 51321318 51321780 -101215479 - Lx8 LINE L1 -837 6636 6181 4 976 323 318 102 20 chr5 51321892 51322088 -101215171 - L1MEe LINE L1 -1174 4972 4761 4 976 321 89 0 0 chr5 51322114 51322159 -101215100 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 976 21 89 0 0 chr5 51322639 51322695 -101214564 + AT_rich Low_complexity Low_complexity 1 56 0 4 976 277 314 0 0 chr5 51322872 51322942 -101214317 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 976 670 299 44 7 chr5 51322942 51323215 -101214044 - L1MA4A LINE L1 -332 5959 5677 4 976 2275 216 38 61 chr5 51323834 51324441 -101212818 - Lx3C LINE L1 -397 6579 5987 4 976 1064 222 187 3 chr5 51324444 51324765 -101212494 + Lx3B LINE L1 6594 6973 0 4 976 256 285 28 28 chr5 51324893 51325034 -101212225 - L1MEe LINE L1 -2683 3463 3323 4 976 502 331 85 37 chr5 51325632 51326149 -101211110 - L1MEe LINE L1 -3550 2596 2066 4 976 490 354 44 27 chr5 51327155 51327338 -101209921 - B3A SINE B2 -10 188 3 4 976 296 35 16 49 chr5 51330334 51330395 -101206864 + (CAAAAA)n Simple_repeat Simple_repeat 3 61 0 4 976 188 246 0 97 chr5 51330664 51330736 -101206523 + L3 LINE CR1 2344 2408 -2081 4 976 7248 78 10 3 chr5 51331151 51332130 -101205129 - L1_Mus3 LINE L1 0 6638 5677 4 976 437 62 15 0 chr5 51332216 51332281 -101204978 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 4 976 390 21 0 0 chr5 51332281 51332327 -101204932 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 976 284 292 46 31 chr5 51332329 51332523 -101204736 - L1M1 LINE L1 -565 5735 5539 4 976 264 367 0 25 chr5 51332712 51332793 -101204466 + MTEa LTR MaLR 19 97 -282 4 976 260 295 168 9 chr5 51332890 51333003 -101204256 + MT2A LTR ERVL 332 462 -71 4 976 340 55 0 0 chr5 51333450 51333505 -101203754 + Lx LINE L1 6600 6654 0 4 976 364 248 48 19 chr5 51333782 51333885 -101203374 + LTR33 LTR ERVL 410 515 0 5 976 292 318 65 43 chr5 51333945 51334129 -101203130 - L2a LINE L2 -13 3413 3226 5 976 694 172 38 193 chr5 51334286 51334365 -101202894 - ORR1A2 LTR MaLR 0 384 327 5 976 472 135 26 43 chr5 51334365 51334481 -101202778 - Lx3A LINE L1 -8 6973 6860 5 976 1247 146 14 33 chr5 51334481 51334703 -101202556 - ORR1A2 LTR MaLR -58 326 68 5 976 28953 73 80 6 chr5 51334703 51339445 -101197814 + L1Md_F3 LINE L1 499 5586 -297 5 976 8029 39 8 1 chr5 51339446 51340422 -101196837 + L1Md_F3 LINE L1 5588 6570 -14 5 976 572 170 0 54 chr5 51340423 51340535 -101196724 - ORR1A2 LTR MaLR -221 106 1 5 976 302 355 39 35 chr5 51340968 51341222 -101196037 - L2a LINE L2 -435 2984 2730 5 976 1478 66 26 82 chr5 51342741 51342972 -101194287 - L1_Mus2 LINE L1 -3 6563 6346 5 976 206 121 0 0 chr5 51343044 51343077 -101194182 + (TTG)n Simple_repeat Simple_repeat 2 34 0 5 976 405 0 0 0 chr5 51343082 51343127 -101194132 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 976 474 314 139 8 chr5 51343625 51343891 -101193368 - MLT1C LTR MaLR -141 326 26 5 976 388 317 69 10 chr5 51344259 51344463 -101192796 + B3 SINE B2 1 216 0 5 976 4459 63 14 14 chr5 51344499 51344800 -101192459 + L1_Mus1 LINE L1 5977 6281 -286 5 976 2888 47 0 29 chr5 51344800 51345176 -101192083 - RLTR10B2 LTR ERVK 0 365 1 5 976 4459 63 14 14 chr5 51345176 51345465 -101191794 + L1_Mus1 LINE L1 6282 6567 0 5 976 424 328 8 0 chr5 51346598 51346732 -101190527 - RLTR40 LTR ERVK -10 807 673 5 976 574 221 65 79 chr5 51346768 51346984 -101190275 - RLTR40 LTR ERVK -307 510 298 5 976 437 34 17 0 chr5 51346984 51347043 -101190216 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 976 227 163 0 39 chr5 51347044 51347095 -101190164 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 5 976 1545 78 0 0 chr5 51347417 51347622 -101189637 - L1_Mus1 LINE L1 0 6567 6363 5 976 21 0 0 0 chr5 51347653 51347674 -101189585 + AT_rich Low_complexity Low_complexity 1 21 0 5 976 1739 126 15 4 chr5 51348519 51348789 -101188470 + Lx LINE L1 6381 6653 -1 5 976 675 0 0 0 chr5 51351179 51351254 -101186005 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 976 536 366 31 21 chr5 51351673 51352095 -101185164 + L2 LINE L2 1833 2258 -1161 5 976 25 31 0 0 chr5 51352930 51352962 -101184297 + AT_rich Low_complexity Low_complexity 1 32 0 5 976 490 296 31 26 chr5 51353576 51353770 -101183489 + B3A SINE B2 4 198 0 5 976 396 0 0 0 chr5 51353881 51353925 -101183334 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 976 277 256 0 43 chr5 51354786 51354880 -101182379 + T-rich Low_complexity Low_complexity 4 93 0 5 976 486 0 0 0 chr5 51354904 51354958 -101182301 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 976 279 0 0 0 chr5 51354958 51354988 -101182271 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 976 21 57 0 0 chr5 51355796 51355831 -101181428 + AT_rich Low_complexity Low_complexity 1 35 0 5 976 225 0 0 0 chr5 51356762 51356787 -101180472 + (TGG)n Simple_repeat Simple_repeat 1 25 0 5 976 1028 117 0 0 chr5 51356787 51356927 -101180332 - B1_Mus2 SINE Alu -2 145 6 5 976 825 272 118 29 chr5 51356974 51357130 -101180129 + MTEa LTR MaLR 1 183 -196 5 976 252 0 0 0 chr5 51357130 51357158 -101180101 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 976 477 0 0 0 chr5 51357158 51357210 -101180049 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 976 825 272 118 29 chr5 51357210 51357400 -101179859 + MTEa LTR MaLR 184 378 -1 5 976 800 287 4 17 chr5 51358179 51358413 -101178846 - Lx9 LINE L1 -768 6876 6646 5 976 559 299 7 7 chr5 51358468 51358616 -101178643 + Lx9 LINE L1 6400 6547 -1097 5 976 228 214 57 0 chr5 51359621 51359691 -101177568 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 5 976 228 227 0 0 chr5 51359680 51359724 -101177535 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 976 396 331 6 121 chr5 51359724 51359906 -101177353 - RSINE1 SINE B4 0 165 5 5 976 278 347 99 30 chr5 51360005 51360207 -101177052 + MIR SINE MIR 47 262 0 5 976 25 0 0 0 chr5 51360357 51360382 -101176877 + AT_rich Low_complexity Low_complexity 1 25 0 5 976 358 327 64 18 chr5 51360657 51360937 -101176322 - HAL1 LINE L1 -175 2332 2040 5 976 1704 141 138 51 chr5 51361056 51361494 -101175765 - RMER16 LTR ERVK -138 395 1 5 976 333 0 0 0 chr5 51361656 51361693 -101175566 + (T)n Simple_repeat Simple_repeat 1 37 0 5 976 239 71 24 0 chr5 51361915 51361957 -101175302 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 976 4176 218 28 21 chr5 51362137 51363020 -101174239 - Lx5 LINE L1 -37 7013 6125 5 976 669 90 0 0 chr5 51363042 51363153 -101174106 + (TC)n Simple_repeat Simple_repeat 2 112 0 5 976 255 310 94 12 chr5 51364215 51364375 -101172884 - L1MA8 LINE L1 -379 5912 5740 5 976 423 368 64 83 chr5 51364508 51364881 -101172378 + MLT1G3 LTR MaLR 10 375 -204 5 976 22 0 0 0 chr5 51365476 51365498 -101171761 + AT_rich Low_complexity Low_complexity 1 22 0 5 976 521 240 7 7 chr5 51366531 51366682 -101170577 - L1_Mur3 LINE L1 -6689 1023 873 5 976 3243 39 84 29 chr5 51366741 51367191 -101170068 + IAPLTR2_Mm LTR ERVK 1 475 0 5 976 2281 70 121 11 chr5 51367207 51367555 -101169704 + RLTR10 LTR ERVK 5 390 0 5 976 576 227 17 0 chr5 51367750 51367926 -101169333 + CT-rich Low_complexity Low_complexity 1 179 0 5 976 198 103 0 0 chr5 51368237 51368266 -101168993 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 5 976 519 82 0 0 chr5 51368271 51368344 -101168915 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 976 375 22 0 0 chr5 51368344 51368384 -101168875 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 976 1745 184 40 29 chr5 51369427 51369801 -101167458 + ORR1C1 LTR MaLR 1 378 0 5 976 234 209 0 23 chr5 51372574 51372618 -101164641 - Lx8 LINE L1 -478 6995 6953 5 976 21 57 0 0 chr5 51372868 51372903 -101164356 + AT_rich Low_complexity Low_complexity 1 35 0 5 976 209 92 76 15 chr5 51372917 51372983 -101164276 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 5 976 1016 333 28 46 chr5 51373013 51373555 -101163704 - Lx9 LINE L1 -130 7514 6983 5 976 207 267 0 0 chr5 51374164 51374209 -101163050 + L2c LINE L2 3283 3327 -60 5 976 216 302 23 0 chr5 51375391 51375477 -101161782 + (TCTCTG)n Simple_repeat Simple_repeat 2 89 0 5 976 409 154 17 17 chr5 51375488 51375607 -101161652 + (TCTCTG)n Simple_repeat Simple_repeat 2 120 0 5 976 288 0 0 0 chr5 51375610 51375642 -101161617 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 976 373 115 45 11 chr5 51378747 51378835 -101158424 + CT-rich Low_complexity Low_complexity 5 95 0 5 976 26 50 0 0 chr5 51378874 51378914 -101158345 + AT_rich Low_complexity Low_complexity 1 40 0 5 976 1738 328 23 45 chr5 51378914 51379687 -101157572 - Lx9 LINE L1 -461 7183 6428 5 15 381 263 127 41 chr5 51379984 51380252 -101157007 - Lx9 LINE L1 -1679 5965 5686 5 977 355 325 94 29 chr5 51380428 51380672 -101156587 + Lx7 LINE L1 7076 7335 -361 5 977 219 182 29 29 chr5 51380672 51380740 -101156519 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 5 977 35 41 0 0 chr5 51380815 51380864 -101156395 + AT_rich Low_complexity Low_complexity 1 49 0 5 977 989 325 16 57 chr5 51381353 51381741 -101155518 - MTE2b LTR MaLR -5 374 3 5 977 2792 55 0 3 chr5 51382777 51383123 -101154136 - IAPLTR4 LTR ERVK 0 345 1 5 977 423 0 0 0 chr5 51384261 51384308 -101152951 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 977 933 261 77 7 chr5 51384311 51384608 -101152651 - Lx7 LINE L1 -1790 5906 5589 5 977 891 321 59 23 chr5 51384691 51385217 -101152042 + L1MC1 LINE L1 5717 6261 -72 5 977 23 0 0 0 chr5 51386524 51386547 -101150712 + AT_rich Low_complexity Low_complexity 1 23 0 5 977 21 0 0 0 chr5 51386648 51386669 -101150590 + AT_rich Low_complexity Low_complexity 1 21 0 5 977 573 287 98 52 chr5 51386734 51387039 -101150220 - Lx7 LINE L1 -387 7309 6991 5 977 8974 124 7 18 chr5 51387078 51387095 -101150164 - Lx3A LINE L1 -1 6980 6966 5 977 378 0 0 0 chr5 51387095 51387137 -101150122 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 5 977 8974 124 7 18 chr5 51387137 51388208 -101149051 - Lx3A LINE L1 -16 6965 5907 5 977 351 0 0 0 chr5 51388208 51388247 -101149012 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 5 977 11483 88 5 3 chr5 51388247 51389970 -101147289 - Lx3A LINE L1 -1075 5906 4183 5 977 673 31 41 0 chr5 51390922 51391019 -101146240 - L1_Mus1 LINE L1 -2 6565 6465 5 977 1027 51 0 14 chr5 51391019 51391157 -101146102 + L1_Mus1 LINE L1 6044 6179 -388 5 977 2061 98 3 71 chr5 51392104 51392455 -101144804 - IAPLTR1a_Mm LTR ERVK -10 327 1 5 977 55869 8 3 2 chr5 51392455 51398929 -101138330 - IAPEz-int LTR ERVK 0 6481 1 5 977 2063 95 3 71 chr5 51398930 51399280 -101137979 - IAPLTR1a_Mm LTR ERVK -11 326 1 5 977 1208 97 4 4 chr5 51400118 51400356 -101136903 + (TC)n Simple_repeat Simple_repeat 1 238 0 5 977 25 31 0 0 chr5 51400464 51400496 -101136763 + AT_rich Low_complexity Low_complexity 1 32 0 5 977 493 278 104 0 chr5 51400506 51400621 -101136638 - B3 SINE B2 -89 127 1 5 977 456 327 38 54 chr5 51400627 51400996 -101136263 - Lx8 LINE L1 -228 7245 6883 5 977 190 246 0 110 chr5 51402821 51402894 -101134365 - MIR SINE MIR -102 160 96 5 977 186 338 15 0 chr5 51403417 51403485 -101133774 - MIRm SINE MIR -130 146 78 5 977 240 337 12 0 chr5 51404022 51404105 -101133154 - MLT1B LTR MaLR -332 180 97 5 977 2926 60 0 0 chr5 51404281 51404665 -101132594 - L1Md_F2 LINE L1 -246 6336 5953 5 977 1660 96 12 0 chr5 51404665 51404905 -101132354 + L1_Mus1 LINE L1 6325 6567 0 5 977 1685 266 46 14 chr5 51405262 51405766 -101131493 - Lx9 LINE L1 -832 6812 6293 5 977 34880 58 1 9 chr5 51405760 51411712 -101125547 - L1Md_F3 LINE L1 -7 6577 679 5 977 319 131 15 62 chr5 51411714 51411779 -101125480 + MURVY-LTR LTR ERV1 102 163 -356 5 977 219 365 0 0 chr5 51412011 51412074 -101125185 - B4A SINE B4 -227 65 3 5 977 336 304 34 34 chr5 51412074 51412182 -101125077 - MLT1B LTR MaLR -282 108 1 5 977 1142 191 14 9 chr5 51412958 51413175 -101124084 - URR1B DNA MER1_type 0 225 8 5 977 16315 15 0 0 chr5 51413615 51416299 -101120960 - L1Md_T LINE L1 0 6582 3899 5 977 29 0 0 0 chr5 51416880 51416909 -101120350 + AT_rich Low_complexity Low_complexity 1 29 0 5 977 377 328 43 29 chr5 51418670 51418877 -101118382 + MER58B DNA MER1_type 128 337 -4 5 977 210 37 0 0 chr5 51419247 51419274 -101117985 + (TTA)n Simple_repeat Simple_repeat 1 27 0 6 977 213 39 0 0 chr5 51419278 51419304 -101117955 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 6 977 405 0 0 0 chr5 51420694 51420739 -101116520 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 977 21 0 0 0 chr5 51420739 51420760 -101116499 + AT_rich Low_complexity Low_complexity 1 21 0 6 977 1097 336 56 62 chr5 51421315 51422387 -101114872 - Lx8 LINE L1 -9 7464 6400 6 977 5567 83 14 18 chr5 51422394 51423163 -101114096 - L1_Mus4 LINE L1 -12 6624 5859 6 977 4574 141 22 1 chr5 51423165 51423975 -101113284 + L1_Mm LINE L1 3884 4710 -1173 6 977 628 313 20 0 chr5 51423979 51424174 -101113085 - Lx8 LINE L1 -1064 6409 6211 6 977 743 298 68 15 chr5 51425123 51425431 -101111828 - ORR1E LTR MaLR -6 373 3 6 977 215 239 126 60 chr5 51425592 51425727 -101111532 + L2a LINE L2 3272 3403 -23 6 977 195 42 0 0 chr5 51425817 51425841 -101111418 + (TAA)n Simple_repeat Simple_repeat 1 24 0 6 977 22 70 0 0 chr5 51426396 51426439 -101110820 + AT_rich Low_complexity Low_complexity 1 43 0 6 977 296 285 106 4 chr5 51426686 51426801 -101110458 - MIRb SINE MIR -110 158 25 6 977 486 46 0 0 chr5 51427749 51427814 -101109445 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 977 23 0 0 0 chr5 51428576 51428599 -101108660 + AT_rich Low_complexity Low_complexity 1 23 0 6 977 1675 146 51 78 chr5 51429167 51429502 -101107757 + ORR1A3 LTR MaLR 1 326 0 6 977 4390 50 2 0 chr5 51429748 51430286 -101106973 + L1Md_F2 LINE L1 6043 6581 -1 6 977 293 0 27 0 chr5 51431875 51431912 -101105347 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 977 242 223 103 13 chr5 51433785 51433863 -101103396 + MIRc SINE MIR 105 192 -76 6 977 2475 69 0 0 chr5 51434009 51434327 -101102932 - L1_Mus1 LINE L1 -1 6566 6249 6 977 524 231 26 118 chr5 51434357 51434509 -101102750 + B4 SINE B4 80 217 -75 6 977 21 57 0 0 chr5 51434512 51434547 -101102712 + AT_rich Low_complexity Low_complexity 1 35 0 6 977 253 276 24 73 chr5 51434547 51434629 -101102630 + B4 SINE B4 215 292 0 6 977 625 260 109 38 chr5 51435476 51435816 -101101443 - Lx8 LINE L1 -7 7466 7103 6 977 369 304 168 9 chr5 51435830 51436056 -101101203 - Lx8 LINE L1 -556 6917 6656 6 977 2368 204 41 59 chr5 51436390 51437004 -101100255 + RMER1C Other Other 738 1340 -2 6 977 322 333 72 7 chr5 51437674 51437813 -101099446 - L2b LINE L2 0 3375 3228 6 977 231 61 0 0 chr5 51439010 51439043 -101098216 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 977 444 19 0 0 chr5 51440061 51440114 -101097145 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 977 738 0 0 0 chr5 51441373 51441455 -101095804 + (GA)n Simple_repeat Simple_repeat 1 82 0 6 977 917 69 8 0 chr5 51441854 51441984 -101095275 + (TAGG)n Simple_repeat Simple_repeat 1 131 0 6 977 185 0 0 39 chr5 51444131 51444157 -101093102 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 6 977 457 314 65 47 chr5 51444198 51444662 -101092597 - L1M5 LINE L1 -2142 4004 3533 6 977 222 37 0 0 chr5 51445161 51445188 -101092071 + (TATG)n Simple_repeat Simple_repeat 2 28 0 6 977 25 0 0 0 chr5 51445281 51445306 -101091953 + AT_rich Low_complexity Low_complexity 1 25 0 6 977 946 336 78 33 chr5 51445491 51445572 -101091687 - Lx8 LINE L1 -40 7433 7340 6 977 489 84 0 0 chr5 51445572 51445643 -101091616 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 977 946 336 78 33 chr5 51445643 51446139 -101091120 - Lx8 LINE L1 -134 7339 6830 6 977 26 30 0 0 chr5 51446262 51446295 -101090964 + AT_rich Low_complexity Low_complexity 1 33 0 6 977 1366 223 104 107 chr5 51446675 51447358 -101089901 - Lx9 LINE L1 -6 7638 6958 6 977 307 255 40 20 chr5 51447330 51447430 -101089829 + Lx9 LINE L1 6868 6969 -675 6 977 422 79 0 16 chr5 51447458 51447522 -101089737 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 977 658 343 90 16 chr5 51447564 51447819 -101089440 - B4A SINE B4 -18 274 1 6 977 360 0 0 0 chr5 51448247 51448287 -101088972 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 977 340 182 30 0 chr5 51448289 51448355 -101088904 - Lx9 LINE L1 -187 7457 7390 6 977 2259 105 10 106 chr5 51448498 51448902 -101088357 - RLTR8 LTR ERVK 0 365 1 6 977 554 323 44 3 chr5 51449112 51449451 -101087808 + MER47B DNA MER2_type 1 418 0 6 977 194 218 89 18 chr5 51449666 51449722 -101087537 + MIRb SINE MIR 170 229 -39 6 977 303 49 0 0 chr5 51450274 51450315 -101086944 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 977 391 312 55 0 chr5 51450318 51450427 -101086832 - B4A SINE B4 -16 276 162 6 977 586 292 39 17 chr5 51450981 51451005 -101086254 - B3 SINE B2 -28 188 163 6 977 338 0 24 0 chr5 51451005 51451047 -101086212 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 977 618 263 35 1 chr5 51451047 51451203 -101086056 - B3A SINE B2 -54 162 4 6 977 21 57 0 0 chr5 51451912 51451947 -101085312 + AT_rich Low_complexity Low_complexity 1 35 0 6 977 763 286 14 5 chr5 51452140 51452347 -101084912 + B3 SINE B2 5 213 -3 6 977 518 332 24 35 chr5 51453694 51453912 -101083347 + B3A SINE B2 3 216 0 6 977 2584 210 89 61 chr5 51454731 51454831 -101082428 + RMER1A Other Other 304 394 -636 6 977 351 0 0 0 chr5 51454831 51454870 -101082389 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 977 2584 210 89 61 chr5 51454870 51455474 -101081785 + RMER1A Other Other 395 1028 -2 6 977 4536 106 42 0 chr5 51455589 51456853 -101080406 + L1Md_F LINE L1 430 1749 -4134 6 977 4042 95 0 23 chr5 51456848 51457462 -101079797 - L1_Mur1 LINE L1 -451 5435 4836 6 977 2249 110 3 0 chr5 51457462 51457788 -101079471 + Lx3_Mus LINE L1 6683 7009 0 6 977 683 300 61 46 chr5 51457836 51458116 -101079143 + ORR1E LTR MaLR 74 357 -2 6 977 226 67 22 22 chr5 51458148 51458194 -101079065 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 6 977 6064 34 12 0 chr5 51458308 51459036 -101078223 - L1Md_T LINE L1 -1 6581 5845 6 977 3748 84 21 17 chr5 51459107 51459639 -101077620 - L1Md_F2 LINE L1 0 6582 6049 6 977 381 229 169 0 chr5 51459639 51459757 -101077502 - B1_Mur2 SINE Alu -11 138 1 6 977 198 118 0 0 chr5 51459907 51459941 -101077318 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 977 606 63 0 0 chr5 51459943 51460022 -101077237 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 6 977 546 16 0 0 chr5 51460099 51460162 -101077097 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 6 977 311 379 34 34 chr5 51460881 51461056 -101076203 - LTR85c LTR Gypsy? -648 175 1 6 977 197 65 0 31 chr5 51461235 51461267 -101075992 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6 977 366 326 100 7 chr5 51463422 51463685 -101073574 - L2a LINE L2 -265 3161 2875 6 977 211 384 129 28 chr5 51463971 51464397 -101072862 - L2 LINE L2 -473 2946 2478 6 977 251 321 0 35 chr5 51464541 51464628 -101072631 + ID_B1 SINE B4 139 222 -2 6 977 2161 133 12 0 chr5 51465957 51466280 -101070979 + ORR1A2 LTR MaLR 1 327 0 6 977 225 232 24 0 chr5 51466487 51466569 -101070690 + Lx6 LINE L1 7351 7434 -26 6 977 37 23 0 0 chr5 51466569 51466613 -101070646 + AT_rich Low_complexity Low_complexity 1 44 0 6 977 1584 318 94 6 chr5 51466818 51467502 -101069757 - Lx8 LINE L1 -149 7324 6581 6 977 654 311 36 36 chr5 51467566 51467819 -101069440 + Lx8 LINE L1 6292 6544 -929 6 977 848 346 37 32 chr5 51467819 51468225 -101069034 + Lx8 LINE L1 6851 7258 -215 6 977 397 354 48 57 chr5 51468638 51468846 -101068413 + MLT1D LTR MaLR 6 211 -294 6 977 472 368 23 0 chr5 51468846 51469020 -101068239 + B4A SINE B4 1 178 -114 6 977 318 115 0 0 chr5 51469143 51469204 -101068055 + (T)n Simple_repeat Simple_repeat 1 61 0 6 977 801 302 58 36 chr5 51469333 51469611 -101067648 + B4A SINE B4 9 292 0 6 977 504 338 42 13 chr5 51469869 51470106 -101067153 + MER2 DNA MER2_type 87 330 -15 6 977 3193 71 2 2 chr5 51471113 51471539 -101065720 - L1_Mm LINE L1 -452 5431 5006 6 977 3731 104 92 9 chr5 51471539 51472123 -101065136 + L1Md_F2 LINE L1 5942 6574 -8 6 977 1939 92 114 3 chr5 51472298 51472614 -101064645 - L1_Mus3 LINE L1 -1 6637 6287 6 977 21 0 0 0 chr5 51472681 51472702 -101064557 + AT_rich Low_complexity Low_complexity 1 21 0 6 977 249 108 0 0 chr5 51473397 51473434 -101063825 + (T)n Simple_repeat Simple_repeat 1 37 0 6 977 1665 246 98 5 chr5 51473710 51474110 -101063149 + Lx5 LINE L1 6611 7047 -3 6 977 371 328 100 17 chr5 51474227 51474705 -101062554 - L1MEg LINE L1 -4884 1200 683 6 977 926 165 159 5 chr5 51475069 51475264 -101061995 + URR1A DNA MER1_type 2 226 0 6 977 285 318 114 50 chr5 51476224 51476426 -101060833 + MER44A DNA MER2_type 7 221 -118 6 977 28 71 0 0 chr5 51476441 51476497 -101060762 + AT_rich Low_complexity Low_complexity 1 56 0 6 977 961 292 133 38 chr5 51478045 51479097 -101058162 - L1MCb LINE L1 -5033 1718 474 6 977 226 204 11 11 chr5 51480056 51480145 -101057114 + (CA)n Simple_repeat Simple_repeat 1 89 0 6 977 183 139 0 0 chr5 51480267 51480303 -101056956 + (T)n Simple_repeat Simple_repeat 1 36 0 6 977 1088 345 30 92 chr5 51480809 51481480 -101055779 - Lx8 LINE L1 -252 7221 6593 6 977 354 332 44 115 chr5 51481603 51481855 -101055404 + MIR SINE MIR 15 248 -14 6 977 217 350 65 57 chr5 51482532 51482762 -101054497 - L2c LINE L2 -235 3152 2921 6 977 2399 77 3 15 chr5 51483453 51483782 -101053477 - Lx3_Mus LINE L1 0 7009 6685 6 977 226 294 44 0 chr5 51483968 51484036 -101053223 + CT-rich Low_complexity Low_complexity 5 75 0 6 977 1221 78 0 0 chr5 51485203 51485369 -101051890 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 6 977 1086 135 0 0 chr5 51485384 51485562 -101051697 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 6 977 1266 46 28 17 chr5 51486206 51486383 -101050876 - L1Md_F3 LINE L1 -1 6583 6405 6 977 1554 52 0 83 chr5 51486383 51486613 -101050646 + L1Md_F3 LINE L1 6166 6376 -208 6 977 444 82 0 0 chr5 51486870 51486931 -101050328 + (TAAA)n Simple_repeat Simple_repeat 3 63 0 6 977 1383 172 17 8 chr5 51487768 51488008 -101049251 + Lx5 LINE L1 6314 6555 -495 7 977 594 0 0 0 chr5 51488164 51488230 -101049029 + (TAGA)n Simple_repeat Simple_repeat 2 67 0 7 977 454 179 0 35 chr5 51489049 51489165 -101048094 + CT-rich Low_complexity Low_complexity 1 112 0 7 977 427 332 116 24 chr5 51489229 51489479 -101047780 - B4A SINE B4 -10 282 10 7 977 323 342 0 8 chr5 51490314 51490435 -101046824 - MLT1E1 LTR MaLR -391 263 144 7 977 201 106 0 78 chr5 51490698 51490749 -101046510 + T-rich Low_complexity Low_complexity 6 52 0 7 977 1029 318 65 3 chr5 51491555 51491707 -101045552 + MTD LTR MaLR 49 206 -213 7 977 242 29 29 0 chr5 51491707 51491742 -101045517 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 977 1029 318 65 3 chr5 51491742 51491927 -101045332 + MTD LTR MaLR 207 406 -13 7 977 24 0 0 0 chr5 51491949 51491973 -101045286 + AT_rich Low_complexity Low_complexity 1 24 0 7 977 394 332 129 27 chr5 51492914 51493208 -101044051 - MLT1A0 LTR MaLR -41 324 1 7 977 617 356 29 89 chr5 51493881 51494263 -101042996 - MLT2D LTR ERVL -55 359 1 7 977 2028 176 49 16 chr5 51494336 51494829 -101042430 - RLTR20D LTR ERVK 0 568 1 7 977 227 267 0 0 chr5 51494840 51494885 -101042374 - MIR SINE MIR -198 64 20 7 977 444 327 43 62 chr5 51495487 51495858 -101041401 - MTEa LTR MaLR 0 379 9 7 977 384 363 31 42 chr5 51496368 51496627 -101040632 + MIR SINE MIR 7 262 0 7 977 274 246 0 0 chr5 51497882 51497943 -101039316 - MLT1G3 LTR MaLR -16 579 519 7 977 567 164 0 0 chr5 51498184 51498288 -101038971 + CT-rich Low_complexity Low_complexity 2 105 0 7 977 434 18 0 18 chr5 51498674 51498730 -101038529 + (TCC)n Simple_repeat Simple_repeat 2 56 0 7 977 186 43 0 0 chr5 51498730 51498753 -101038506 + (CAT)n Simple_repeat Simple_repeat 2 24 0 7 977 258 313 0 0 chr5 51499730 51499797 -101037462 + MIRb SINE MIR 183 249 -19 7 977 255 306 245 12 chr5 51500160 51500405 -101036854 + L2c LINE L2 2913 3214 -173 1 977 612 254 63 19 chr5 51501402 51501607 -101035652 + B3 SINE B2 3 216 0 2 977 585 0 0 0 chr5 51501756 51501821 -101035438 + (GTTTG)n Simple_repeat Simple_repeat 2 66 0 3 977 344 246 0 0 chr5 51501825 51501894 -101035365 - ID4 SINE ID -10 73 5 4 977 227 239 44 15 chr5 51502068 51502136 -101035123 - B4A SINE B4 -192 100 31 5 977 2120 303 126 22 chr5 51503643 51504506 -101032753 - Lx8 LINE L1 0 7473 6521 6 977 186 156 0 0 chr5 51504508 51504553 -101032706 + T-rich Low_complexity Low_complexity 3 47 0 7 977 296 368 18 0 chr5 51504553 51504667 -101032592 - Lx9 LINE L1 -993 6651 6536 8 977 3759 62 0 2 chr5 51504967 51505451 -101031808 - L1_Mus1 LINE L1 0 6567 6085 9 977 415 222 179 17 chr5 51505860 51506039 -101031220 + L1M2 LINE L1 4341 4548 -1595 1 977 420 71 0 0 chr5 51506103 51506159 -101031100 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 977 3011 71 12 2 chr5 51506266 51506674 -101030585 + Lx3_Mus LINE L1 6590 7001 -8 1 977 6509 15 0 0 chr5 51506689 51507433 -101029826 + L1Md_T LINE L1 4843 5586 -297 1 977 8052 53 0 0 chr5 51507433 51508429 -101028830 + L1Md_T LINE L1 5587 6582 0 1 977 252 0 0 0 chr5 51508552 51508580 -101028679 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 977 3783 46 2 6 chr5 51508714 51509193 -101028066 + L1Md_F2 LINE L1 6104 6580 -2 1 977 345 333 33 0 chr5 51509403 51509556 -101027703 + L1M2 LINE L1 4866 5023 -1120 1 977 1288 58 4 13 chr5 51509785 51510010 -101027249 + (TCC)n Simple_repeat Simple_repeat 1 222 0 1 977 1005 263 35 28 chr5 51510287 51510573 -101026686 - Lx8 LINE L1 -99 7374 7087 1 977 507 269 91 62 chr5 51510649 51511033 -101026226 - L1MEc LINE L1 -5321 1079 685 1 122 288 350 10 0 chr5 51511256 51511359 -101025900 - Lx8 LINE L1 -265 7208 7105 1 978 315 223 7 14 chr5 51511382 51511465 -101025794 - Lx3C LINE L1 -473 6585 6499 2 978 292 355 144 41 chr5 51511638 51511979 -101025280 + L2 LINE L2 2182 2557 -862 2 978 22 0 0 0 chr5 51512187 51512209 -101025050 + AT_rich Low_complexity Low_complexity 1 22 0 2 978 516 122 0 0 chr5 51512326 51512408 -101024851 + (TCC)n Simple_repeat Simple_repeat 3 84 0 2 978 991 206 92 21 chr5 51512437 51512675 -101024584 - Lx8 LINE L1 -318 7155 6901 2 978 273 354 75 35 chr5 51512725 51513100 -101024159 - L1MC4a LINE L1 -31 7964 7575 2 978 420 299 91 32 chr5 51513653 51513874 -101023385 - L1MC4a LINE L1 -778 7104 6871 2 978 186 43 0 0 chr5 51514294 51514317 -101022942 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 2 978 410 0 20 0 chr5 51514468 51514518 -101022741 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 978 51 42 0 0 chr5 51514535 51514607 -101022652 + AT_rich Low_complexity Low_complexity 1 72 0 2 978 1424 149 16 33 chr5 51514644 51514887 -101022372 + Lx3B LINE L1 6577 6815 -158 2 978 283 275 72 40 chr5 51514938 51515063 -101022196 + AmnSINE1 SINE SINE 25 153 -422 3 978 618 82 0 0 chr5 51515802 51515887 -101021372 + (GAAAA)n Simple_repeat Simple_repeat 3 87 0 3 978 198 71 0 0 chr5 51517413 51517441 -101019818 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 978 1559 238 30 14 chr5 51517567 51517930 -101019329 + Lx7 LINE L1 6743 7111 -585 3 978 207 381 30 20 chr5 51517948 51518047 -101019212 - MIR3 SINE MIR -10 198 99 3 978 334 57 19 19 chr5 51519459 51519513 -101017746 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 978 615 293 11 91 chr5 51519958 51520330 -101016929 + Lx9 LINE L1 7278 7619 -25 3 978 402 304 46 104 chr5 51520806 51521174 -101016085 - MTEb LTR MaLR -8 371 1 3 978 273 146 0 0 chr5 51521836 51521884 -101015375 + (TCC)n Simple_repeat Simple_repeat 2 49 0 3 978 5091 287 61 28 chr5 51521988 51522295 -101014964 - Lx6 LINE L1 -20 7440 7124 3 978 450 53 0 0 chr5 51522295 51522352 -101014907 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 978 5091 287 61 28 chr5 51522352 51523642 -101013617 - Lx6 LINE L1 -337 7123 5792 3 978 844 306 93 44 chr5 51523613 51524909 -101012350 - L1M3 LINE L1 -811 5332 3954 4 978 207 0 0 0 chr5 51524995 51525018 -101012241 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 978 339 78 0 0 chr5 51525453 51525504 -101011755 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 978 374 358 19 65 chr5 51525648 51525908 -101011351 + L1MC4 LINE L1 6798 7045 -997 4 978 6434 75 5 8 chr5 51526148 51527008 -101010251 - L1_Mus1 LINE L1 0 6567 5711 4 978 37260 24 1 0 chr5 51527210 51532410 -101004849 + L1Md_T LINE L1 422 5586 -297 4 978 8433 34 0 0 chr5 51532410 51533406 -101003853 + L1Md_T LINE L1 5587 6582 0 4 978 416 253 11 11 chr5 51533480 51533572 -101003687 + PB1D10 SINE Alu 24 115 -2 4 978 1152 70 0 0 chr5 51533578 51533721 -101003538 + B1_Mus1 SINE Alu 1 143 -5 4 978 300 27 0 0 chr5 51533724 51533761 -101003498 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 4 978 296 308 45 45 chr5 51533789 51533801 -101003458 + B4 SINE B4 79 190 -102 5 978 393 300 10 0 chr5 51533801 51533901 -101003358 + B1F SINE Alu 1 101 -48 5 978 44 35 0 0 chr5 51534006 51534064 -101003195 + AT_rich Low_complexity Low_complexity 1 58 0 5 978 369 17 52 0 chr5 51534143 51534201 -101003058 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 5 978 347 328 0 8 chr5 51534234 51534366 -101002893 - Lx7 LINE L1 -403 7293 7163 5 978 454 352 72 8 chr5 51534614 51534849 -101002410 - MLT1C LTR MaLR -16 451 202 5 978 453 50 0 0 chr5 51534850 51534910 -101002349 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 978 378 0 0 0 chr5 51536123 51536165 -101001094 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 978 335 154 230 37 chr5 51537244 51537379 -100999880 - Lx9 LINE L1 -50 7594 7434 5 978 240 304 69 48 chr5 51537829 51537974 -100999285 + B1F1 SINE Alu 1 148 -1 5 978 1040 345 46 57 chr5 51538522 51538774 -100998485 + MER82 DNA MER2_type 4 240 -413 6 978 462 36 0 0 chr5 51538774 51538830 -100998429 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 978 1040 345 46 57 chr5 51538830 51539225 -100998034 + MER82 DNA MER2_type 241 644 -9 6 978 23 33 0 0 chr5 51539344 51539374 -100997885 + AT_rich Low_complexity Low_complexity 1 30 0 6 978 342 339 34 28 chr5 51540153 51540332 -100996927 + MER5A DNA MER1_type 4 183 -6 6 978 507 340 0 7 chr5 51540705 51540847 -100996412 + RSINE1 SINE B4 8 148 -17 6 978 192 40 0 0 chr5 51540859 51540884 -100996375 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 978 2753 88 0 5 chr5 51541276 51541666 -100995593 + L1_Mus4 LINE L1 6242 6629 -7 6 978 1205 96 6 0 chr5 51541698 51541876 -100995383 + (GAA)n Simple_repeat Simple_repeat 2 180 0 6 978 963 139 0 16 chr5 51541900 51542083 -100995176 + GA-rich Low_complexity Low_complexity 1 180 0 6 978 585 297 49 54 chr5 51542835 51543020 -100994239 + B3A SINE B2 8 191 -7 6 978 1730 72 8 0 chr5 51543587 51543824 -100993435 - L1_Mm LINE L1 -473 5410 5172 7 978 1681 55 0 31 chr5 51543824 51544047 -100993212 + L1_Mus1 LINE L1 6350 6565 -2 7 978 23 33 0 0 chr5 51544338 51544368 -100992891 + AT_rich Low_complexity Low_complexity 1 30 0 7 978 606 300 38 14 chr5 51544476 51544689 -100992570 + L3b LINE CR1 12 229 -253 7 978 234 0 0 0 chr5 51544757 51544783 -100992476 + (TC)n Simple_repeat Simple_repeat 1 26 0 7 978 288 0 0 0 chr5 51544783 51544814 -100992445 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 978 620 326 47 7 chr5 51545249 51545524 -100991735 - B4 SINE B4 -6 286 1 7 978 30 0 0 0 chr5 51546183 51546213 -100991046 + AT_rich Low_complexity Low_complexity 1 30 0 7 978 587 287 44 33 chr5 51546347 51546527 -100990732 - B3A SINE B2 -16 182 1 7 978 216 384 20 0 chr5 51547125 51547224 -100990035 + L2c LINE L2 3253 3353 -34 7 978 1078 242 70 18 chr5 51547353 51547626 -100989633 + MMAR1 DNA Mariner 130 416 -870 8 978 372 276 284 12 chr5 51548738 51548907 -100988352 + ID_B1 SINE B4 2 216 -8 8 978 1467 258 3 0 chr5 51548990 51549324 -100987935 + Lx9 LINE L1 7027 7361 -283 8 978 5253 122 21 11 chr5 51549325 51550138 -100987121 - Lx LINE L1 0 6654 5834 8 978 1259 70 25 0 chr5 51550655 51550972 -100986287 + (TATATG)n Simple_repeat Simple_repeat 1 325 0 8 978 28 0 0 0 chr5 51551171 51551199 -100986060 + AT_rich Low_complexity Low_complexity 1 28 0 8 978 360 0 0 0 chr5 51552071 51552111 -100985148 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 978 185 108 0 26 chr5 51552796 51552834 -100984425 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 8 978 593 326 111 38 chr5 51554462 51554778 -100982481 + MLT1A LTR MaLR 36 374 0 8 978 1010 335 72 12 chr5 51554995 51555397 -100981862 + MLT1C LTR MaLR 42 467 0 8 978 332 293 108 45 chr5 51556058 51556215 -100981044 - MLT1A0 LTR MaLR -198 167 1 9 978 1028 45 8 0 chr5 51556915 51557049 -100980210 + (TC)n Simple_repeat Simple_repeat 1 135 0 9 978 498 33 0 0 chr5 51557049 51557108 -100980151 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 978 437 268 74 74 chr5 51557132 51557281 -100979978 + B1F SINE Alu 1 149 0 9 978 541 72 78 23 chr5 51557283 51557411 -100979848 + GA-rich Low_complexity Low_complexity 3 137 0 9 978 1107 86 0 17 chr5 51557411 51557588 -100979671 + (GAA)n Simple_repeat Simple_repeat 2 175 0 9 978 656 254 112 16 chr5 51558024 51558212 -100979047 - ID_B1 SINE B4 -3 221 16 9 978 198 0 0 0 chr5 51558515 51558537 -100978722 + (TTGTG)n Simple_repeat Simple_repeat 1 22 0 9 978 636 162 22 7 chr5 51558538 51558675 -100978584 - Lx2B LINE L1 -6 6994 6856 9 978 302 98 0 0 chr5 51558675 51558716 -100978543 + Lx2 LINE L1 6760 6800 -197 9 978 239 258 32 0 chr5 51559036 51559098 -100978161 - MLT1A1 LTR MaLR -56 352 289 1 978 976 326 46 15 chr5 51560144 51560471 -100976788 - MTE2b LTR MaLR -42 337 1 1 978 437 352 22 118 chr5 51560584 51560960 -100976299 - MLT1G1 LTR MaLR -180 399 1 1 978 189 0 0 0 chr5 51562278 51562299 -100974960 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1 978 501 306 78 69 chr5 51562571 51562803 -100974456 - B4A SINE B4 -56 236 3 1 978 450 53 0 0 chr5 51562993 51563050 -100974209 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 978 23 0 0 0 chr5 51563387 51563410 -100973849 + AT_rich Low_complexity Low_complexity 1 23 0 1 978 235 286 80 45 chr5 51564293 51564381 -100972878 - MLT1G1 LTR MaLR -60 488 398 1 978 479 339 57 31 chr5 51564562 51564790 -100972469 - MLT1G1 LTR MaLR -343 236 3 1 978 196 88 88 0 chr5 51564915 51564949 -100972310 - MIRc SINE MIR -140 128 92 1 978 2670 312 122 52 chr5 51565654 51566593 -100970666 - MTE-int LTR MaLR -42 1538 554 1 978 180 0 0 0 chr5 51566593 51566613 -100970646 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 978 2670 312 122 52 chr5 51566613 51567109 -100970150 - MTE-int LTR MaLR -1027 553 3 1 978 258 358 0 31 chr5 51567146 51567244 -100970015 - MTE2a LTR MaLR -38 341 247 1 978 578 278 61 73 chr5 51567249 51567591 -100969668 + RLTR15 LTR ERVK 1 338 -21 1 978 2882 240 65 5 chr5 51567843 51568504 -100968755 + Lx6 LINE L1 6756 7456 -4 1 978 528 277 151 19 chr5 51568639 51569162 -100968097 - L1MDa LINE L1 -4439 2194 1603 1 978 277 306 0 12 chr5 51569560 51569646 -100967613 - L1MDa LINE L1 -5069 1564 1480 1 978 546 16 0 0 chr5 51569706 51569769 -100967490 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 978 322 350 109 33 chr5 51570040 51570223 -100967036 - L1MDa LINE L1 -6245 388 192 1 978 188 86 0 28 chr5 51570339 51570375 -100966884 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 978 498 195 29 17 chr5 51571420 51571592 -100965667 + GA-rich Low_complexity Low_complexity 4 177 0 1 978 1075 195 22 22 chr5 51572044 51572269 -100964990 - URR1B DNA MER1_type 0 225 1 1 978 845 271 53 5 chr5 51572476 51572684 -100964575 + MTC LTR MaLR 196 413 -8 1 978 5143 192 65 46 chr5 51572688 51573919 -100963340 + MTC-int LTR MaLR 1 1254 -4 1 978 1439 215 141 5 chr5 51573923 51574292 -100962967 + MTC LTR MaLR 1 419 -2 1 978 343 334 79 68 chr5 51574332 51574685 -100962574 - L2c LINE L2 0 3387 3031 1 978 415 326 75 0 chr5 51575652 51575799 -100961460 + RSINE1 SINE B4 2 159 -6 1 978 218 298 10 31 chr5 51575830 51575927 -100961332 + GA-rich Low_complexity Low_complexity 5 99 0 1 978 822 21 0 0 chr5 51576156 51576252 -100961007 + (TC)n Simple_repeat Simple_repeat 1 96 0 1 978 202 242 32 0 chr5 51576274 51576336 -100960923 + (TCTCTG)n Simple_repeat Simple_repeat 6 69 0 1 978 681 296 60 94 chr5 51576970 51577419 -100959840 + Lx8 LINE L1 7052 7617 -27 1 978 1058 65 0 42 chr5 51577679 51577823 -100959436 + B1_Mus1 SINE Alu 1 138 -10 1 978 1162 65 18 0 chr5 51577823 51577991 -100959268 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 1 978 552 100 0 0 chr5 51578004 51578084 -100959175 + (GAAA)n Simple_repeat Simple_repeat 1 80 0 1 978 242 202 20 41 chr5 51578128 51578204 -100959055 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 978 384 59 0 0 chr5 51578204 51578255 -100959004 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 978 242 202 20 41 chr5 51578255 51578276 -100958983 + (TA)n Simple_repeat Simple_repeat 1 21 0 1 978 247 403 39 15 chr5 51578642 51578846 -100958413 + MIRb SINE MIR 39 247 -21 1 978 28 61 0 0 chr5 51579419 51579468 -100957791 + AT_rich Low_complexity Low_complexity 1 49 0 1 978 1217 184 9 0 chr5 51579749 51579967 -100957292 + URR1B DNA MER1_type 5 224 -1 1 978 281 318 105 8 chr5 51580836 51580969 -100956290 + B1_Mur1 SINE Alu 3 148 -1 1 978 423 0 0 0 chr5 51580973 51581020 -100956239 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 978 600 14 0 0 chr5 51581021 51581090 -100956169 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 978 463 284 55 0 chr5 51581372 51581481 -100955778 - RSINE1 SINE B4 -47 118 4 1 978 250 280 59 74 chr5 51582050 51582185 -100955074 + LTR82A LTR ERVL 23 155 -717 1 978 324 247 0 0 chr5 51582198 51582275 -100954984 + L1MA9 LINE L1 6048 6124 -188 1 978 356 314 51 23 chr5 51582586 51582756 -100954503 - B4 SINE B4 -128 164 2 1 978 756 213 0 0 chr5 51582954 51583090 -100954169 + B1_Mus1 SINE Alu 5 140 -8 1 978 4954 103 27 9 chr5 51583531 51584273 -100952986 - Lx3_Mus LINE L1 -9 7000 6246 1 978 4483 88 87 3 chr5 51584273 51584963 -100952296 + Lx6 LINE L1 5177 5920 -1540 1 978 315 161 0 0 chr5 51584963 51585019 -100952240 + (TAA)n Simple_repeat Simple_repeat 1 56 0 1 978 510 72 0 0 chr5 51585020 51585089 -100952170 + Lx6 LINE L1 5923 5991 -1018 1 978 21 36 0 0 chr5 51586383 51586411 -100950848 + AT_rich Low_complexity Low_complexity 1 28 0 1 978 246 32 0 0 chr5 51586926 51586957 -100950302 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 978 438 94 0 0 chr5 51587684 51587748 -100949511 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 978 291 164 0 0 chr5 51587762 51587823 -100949436 + CT-rich Low_complexity Low_complexity 1 61 0 1 978 414 0 0 0 chr5 51587830 51587876 -100949383 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 978 201 178 0 0 chr5 51587895 51587940 -100949319 + GA-rich Low_complexity Low_complexity 1 45 0 1 978 324 276 23 0 chr5 51588462 51588549 -100948710 + MLT1N2 LTR MaLR 462 550 -12 1 978 229 315 0 27 chr5 51588860 51588935 -100948324 + ID4 SINE ID 2 74 -9 1 978 329 353 17 25 chr5 51589153 51589272 -100947987 - ID_B1 SINE B4 -6 218 101 1 978 354 321 45 18 chr5 51589677 51589788 -100947471 + RSINE1 SINE B4 36 149 -16 1 978 185 0 0 39 chr5 51589794 51589820 -100947439 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1 978 1687 267 18 42 chr5 51591242 51591683 -100945576 - RMER5 LTR ERV1 -9 525 97 1 978 1566 189 114 6 chr5 51591683 51592024 -100945235 + ORR1C1 LTR MaLR 1 378 0 1 978 1687 267 18 42 chr5 51592024 51592082 -100945177 - RMER5 LTR ERV1 -438 96 39 1 978 22 56 0 0 chr5 51592288 51592324 -100944935 + AT_rich Low_complexity Low_complexity 1 36 0 1 978 224 69 0 0 chr5 51592468 51592497 -100944762 - B1_Mus2 SINE Alu -77 70 42 1 978 546 0 136 0 chr5 51592516 51593440 -100943819 + (CCTG)n Simple_repeat Simple_repeat 1 1050 0 1 978 387 86 0 0 chr5 51593451 51593509 -100943750 - B1_Mur4 SINE Alu -91 59 2 1 978 729 209 7 0 chr5 51593728 51593867 -100943392 + B1_Mus2 SINE Alu 6 145 -2 1 978 335 246 73 37 chr5 51596133 51596396 -100940863 - ORR1D2 LTR MaLR 0 370 3 1 978 207 0 0 0 chr5 51596480 51596503 -100940756 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 978 389 292 0 9 chr5 51597353 51597467 -100939792 + MLT1A1 LTR MaLR 296 408 0 1 978 246 237 0 0 chr5 51597797 51597856 -100939403 + L1MB8 LINE L1 6120 6178 0 1 978 1109 289 53 6 chr5 51598385 51598743 -100938516 - MTE2b LTR MaLR -4 375 1 1 978 21 0 0 0 chr5 51598852 51598873 -100938386 + AT_rich Low_complexity Low_complexity 1 21 0 1 978 226 163 23 0 chr5 51598880 51598923 -100938336 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 978 813 230 25 25 chr5 51600272 51600582 -100936677 - ORR1D1 LTR MaLR 0 374 1 1 978 509 180 0 6 chr5 51601235 51601408 -100935851 + CT-rich Low_complexity Low_complexity 1 172 0 1 978 414 57 0 0 chr5 51601468 51601521 -100935738 + (T)n Simple_repeat Simple_repeat 1 53 0 1 978 756 92 8 15 chr5 51601597 51601730 -100935529 + L1Md_F3 LINE L1 6453 6584 0 1 978 468 0 0 0 chr5 51601906 51601958 -100935301 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 978 427 252 84 0 chr5 51601977 51602084 -100935175 - ID_B1 SINE B4 -2 222 107 1 978 361 246 178 23 chr5 51602084 51602101 -100935158 - B1F SINE Alu 0 144 1 1 978 357 276 51 0 chr5 51602125 51602223 -100935036 - ID_B1 SINE B4 0 224 122 1 978 2377 55 0 0 chr5 51602433 51602723 -100934536 - L1_Mus1 LINE L1 -3 6564 6275 1 978 222 61 40 20 chr5 51603043 51603093 -100934166 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 1 978 342 274 227 36 chr5 51603297 51603517 -100933742 + L1M4 LINE L1 602 863 -5679 1 978 762 182 52 41 chr5 51603524 51603696 -100933563 + L1_Mur3 LINE L1 5684 5857 -23 1 978 2284 243 37 7 chr5 51603708 51604255 -100933004 + Lx7 LINE L1 6806 7368 -328 1 978 22 0 0 0 chr5 51604282 51604304 -100932955 + AT_rich Low_complexity Low_complexity 1 22 0 1 978 905 295 29 35 chr5 51604315 51604628 -100932631 + MTE2a-int LTR MaLR 61 371 -1209 1 978 296 383 0 30 chr5 51604611 51604743 -100932516 + MTE2a-int LTR MaLR 484 611 -969 1 978 260 211 19 0 chr5 51604765 51604817 -100932442 + MTE2a-int LTR MaLR 768 820 -760 1 978 1121 302 44 31 chr5 51604826 51605217 -100932042 + MTE2a-int LTR MaLR 790 1417 -163 1 978 627 78 0 0 chr5 51605218 51605308 -100931951 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 978 303 298 48 32 chr5 51605470 51605595 -100931664 + MTE2a-int LTR MaLR 1453 1579 -1 1 978 1255 257 53 69 chr5 51605609 51605869 -100931390 + MTE2a LTR MaLR 10 267 -112 1 978 1440 186 282 11 chr5 51605869 51606217 -100931042 + RLTR41 LTR ERV1 5 446 0 1 978 1255 257 53 69 chr5 51606217 51606332 -100930927 + MTE2a LTR MaLR 268 379 0 1 978 371 308 69 18 chr5 51606333 51606551 -100930708 + L1MC1 LINE L1 6104 6332 -1 1 978 488 264 62 26 chr5 51606657 51606929 -100930330 + L1M4 LINE L1 2618 2899 -3745 1 978 22 56 0 0 chr5 51607219 51607255 -100930004 + AT_rich Low_complexity Low_complexity 1 36 0 1 978 207 0 0 0 chr5 51607665 51607688 -100929571 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1 978 198 0 0 0 chr5 51608045 51608067 -100929192 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 978 21 0 0 0 chr5 51608254 51608275 -100928984 + AT_rich Low_complexity Low_complexity 1 21 0 1 978 15201 20 3 0 chr5 51610666 51612526 -100924733 + L1Md_T LINE L1 3722 5586 -297 1 978 8543 28 3 0 chr5 51612526 51613519 -100923740 + L1Md_T LINE L1 5587 6582 0 1 978 657 172 0 19 chr5 51613560 51613714 -100923545 + G-rich Low_complexity Low_complexity 2 152 0 1 978 561 30 0 0 chr5 51614343 51614410 -100922849 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 978 2789 99 14 2 chr5 51614414 51614827 -100922432 - BGLII LTR ERVK -3 418 1 1 978 351 113 0 0 chr5 51614829 51614882 -100922377 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 978 314 197 0 47 chr5 51614882 51614946 -100922313 + HAL1-3A_ME LINE L1 1976 2036 -822 1 978 623 289 21 7 chr5 51615015 51615158 -100922101 + MER21B LTR ERV1 184 328 -535 1 978 319 289 96 32 chr5 51615229 51615354 -100921905 + MER21B LTR ERV1 436 568 -295 1 978 441 231 56 32 chr5 51615439 51615564 -100921695 + MER21B LTR ERV1 702 829 -34 1 978 379 284 191 50 chr5 51615595 51615877 -100921382 + MLT1C LTR MaLR 136 457 -10 1 978 243 0 0 0 chr5 51617859 51617886 -100919373 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 978 419 210 0 10 chr5 51618021 51618122 -100919137 + CT-rich Low_complexity Low_complexity 3 102 0 2 978 998 105 6 17 chr5 51618122 51618297 -100918962 + (TTC)n Simple_repeat Simple_repeat 2 174 0 2 978 466 15 15 29 chr5 51618654 51618722 -100918537 + (TTG)n Simple_repeat Simple_repeat 3 69 0 2 978 313 311 119 33 chr5 51619960 51620322 -100916937 - L1MC3 LINE L1 -370 7415 7023 2 978 634 264 147 24 chr5 51620548 51620800 -100916459 - Lx8 LINE L1 -201 7272 6990 2 978 702 291 86 22 chr5 51620823 51621136 -100916123 - Lx8 LINE L1 -553 6920 6588 2 978 1853 235 71 57 chr5 51621147 51621652 -100915607 - RLTR18B LTR ERVK 0 512 1 2 978 862 342 21 5 chr5 51621655 51622031 -100915228 - Lx8 LINE L1 -894 6579 6198 2 978 607 293 98 16 chr5 51622296 51622800 -100914459 - Lx8 LINE L1 -1792 5904 5352 2 978 467 289 202 33 chr5 51622823 51623095 -100914164 + MLT1A0 LTR MaLR 48 365 0 2 978 648 328 53 37 chr5 51623569 51623813 -100913446 + B4 SINE B4 8 255 -37 2 978 704 254 9 36 chr5 51623834 51624055 -100913204 + Lx6 LINE L1 7220 7434 -26 2 978 1187 100 0 11 chr5 51624325 51624507 -100912752 + (TCC)n Simple_repeat Simple_repeat 1 180 0 2 978 210 238 0 0 chr5 51624507 51624560 -100912699 + C-rich Low_complexity Low_complexity 6 58 0 2 978 258 132 0 0 chr5 51625766 51625819 -100911440 + (T)n Simple_repeat Simple_repeat 1 53 0 2 978 249 213 83 21 chr5 51626072 51626168 -100911091 - Lx5 LINE L1 -11 7039 6938 2 978 514 125 0 0 chr5 51626197 51626277 -100910982 - Lx4B LINE L1 -1157 5901 5822 2 978 961 122 21 62 chr5 51626864 51627057 -100910202 + L1_Mus3 LINE L1 6454 6638 0 2 978 3330 234 65 15 chr5 51627200 51628086 -100909173 + RCHARR1 DNA MER1_type 4 934 -40 2 978 207 379 63 16 chr5 51628743 51628869 -100908390 - L2b LINE L2 -311 3064 2933 2 978 2861 33 2 171 chr5 51629170 51629639 -100907620 - RLTR10 LTR ERVK 0 390 1 2 978 10273 102 55 48 chr5 51629639 51631571 -100905688 - RLTR10-int LTR ERVK -1 1986 41 2 978 2861 33 2 171 chr5 51631581 51632050 -100905209 - RLTR10 LTR ERVK 0 390 1 2 978 277 314 52 21 chr5 51632793 51632935 -100904324 - MIRb SINE MIR -77 191 39 2 978 1697 161 144 19 chr5 51633274 51633698 -100903561 + L1_Mur2 LINE L1 3388 3864 -2013 2 978 279 0 0 0 chr5 51633899 51633930 -100903329 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 978 351 0 0 0 chr5 51633930 51633968 -100903291 + (GA)n Simple_repeat Simple_repeat 2 40 0 2 978 414 316 79 50 chr5 51633968 51634108 -100903151 - B3A SINE B2 -48 150 7 2 978 25 65 0 0 chr5 51634652 51634698 -100902561 + AT_rich Low_complexity Low_complexity 1 46 0 2 978 1077 218 138 15 chr5 51636277 51636603 -100900656 - ORR1D1 LTR MaLR -5 369 4 2 978 180 158 0 0 chr5 51636626 51636664 -100900595 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 2 978 514 257 9 13 chr5 51636685 51636809 -100900450 - PB1D9 SINE Alu -20 130 10 2 978 9626 77 13 9 chr5 51636897 51639277 -100897982 - Lx3_Mus LINE L1 0 7009 4617 2 978 11604 123 34 17 chr5 51639276 51641913 -100895346 - Lx3_Mus LINE L1 -2869 3017 3 2 122 316 341 41 62 chr5 51642166 51642531 -100894728 - MTEb LTR MaLR -7 372 8 2 979 225 320 85 28 chr5 51644261 51644367 -100892892 + PB1D7 SINE Alu 3 114 -6 2 979 351 0 0 0 chr5 51644602 51644641 -100892618 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 979 332 346 55 67 chr5 51645319 51645629 -100891630 + MTEa LTR MaLR 1 320 -59 2 979 884 337 49 38 chr5 51647033 51647601 -100889658 - MLT1-int LTR MaLR -707 664 66 2 979 558 218 4 36 chr5 51647734 51648014 -100889245 + GA-rich Low_complexity Low_complexity 1 270 0 2 979 198 222 0 0 chr5 51648019 51648073 -100889186 + (CGAAG)n Simple_repeat Simple_repeat 2 55 0 2 979 526 382 58 48 chr5 51648144 51648318 -100888941 - MLT2B4 LTR ERVL -138 382 199 2 979 396 40 0 0 chr5 51648318 51648368 -100888891 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 979 550 355 14 8 chr5 51648368 51648570 -100888689 - MLT2B4 LTR ERVL -322 198 2 2 979 1145 275 42 39 chr5 51648622 51649159 -100888100 - Lx6 LINE L1 -26 7434 6484 2 979 815 322 126 0 chr5 51649169 51649604 -100887655 - Lx6 LINE L1 -695 6355 5866 2 979 1977 199 34 2 chr5 51649601 51650039 -100887220 + L1_Mur3 LINE L1 4391 4842 -1038 2 979 410 279 27 7 chr5 51650336 51650484 -100886775 + L1M6 LINE L1 64 214 -6282 2 979 211 316 0 25 chr5 51650685 51650766 -100886493 + (CATATA)n Simple_repeat Simple_repeat 3 81 0 2 979 6837 103 16 1 chr5 51651117 51652439 -100884820 - L1_Mus3 LINE L1 0 6638 5314 2 979 226 299 65 0 chr5 51653388 51653465 -100883794 + ID4 SINE ID 2 83 0 2 979 248 250 0 94 chr5 51653570 51653676 -100883583 - HAL1b LINE L1 -79 1930 1835 2 979 1756 233 69 83 chr5 51654559 51654685 -100882574 - Lx7 LINE L1 -5 7691 7574 2 979 1856 72 0 23 chr5 51654685 51654942 -100882317 + L1Md_F2 LINE L1 6332 6582 0 2 979 1756 233 69 83 chr5 51654942 51655050 -100882209 - Lx7 LINE L1 -123 7573 7438 2 979 507 69 0 0 chr5 51655050 51655122 -100882137 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 979 1756 233 69 83 chr5 51655122 51655523 -100881736 - Lx7 LINE L1 -259 7437 7064 2 979 589 209 15 0 chr5 51655544 51655678 -100881581 - Lx7 LINE L1 -826 6870 6735 2 979 674 221 43 6 chr5 51655677 51655841 -100881418 - Lx7 LINE L1 -1326 6370 6201 2 979 958 241 27 23 chr5 51656060 51656361 -100880898 + L1MA4 LINE L1 5603 5904 -396 2 979 22212 136 52 21 chr5 51656588 51658896 -100878363 + L1_Mus3 LINE L1 405 3178 -2708 2 979 243 0 0 0 chr5 51658896 51658923 -100878336 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 2 979 22212 112 11 6 chr5 51658923 51662337 -100874922 + L1_Mus3 LINE L1 3176 6635 -3 2 979 3946 198 114 7 chr5 51662468 51663360 -100873899 + Lx2B LINE L1 5894 6878 -122 2 979 186 43 0 0 chr5 51663360 51663383 -100873876 + (TGGG)n Simple_repeat Simple_repeat 1 23 0 2 979 3946 197 115 5 chr5 51663383 51663496 -100873763 + Lx2B LINE L1 6879 6999 -1 2 979 311 286 102 0 chr5 51663804 51663902 -100873357 - MTEb LTR MaLR -148 231 124 2 979 502 312 111 42 chr5 51663906 51664240 -100873019 - ORR1E LTR MaLR 0 359 3 2 979 1571 108 0 0 chr5 51664479 51664710 -100872549 - L1_Mus3 LINE L1 -170 5713 5483 2 979 6155 91 18 0 chr5 51664710 51665600 -100871659 + L1_Mus3 LINE L1 5733 6638 0 2 979 477 0 0 0 chr5 51666004 51666057 -100871202 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 979 252 279 12 12 chr5 51666261 51666341 -100870918 - MER121 Unknown Unknown -173 239 160 2 979 442 310 33 66 chr5 51667199 51667410 -100869849 - B3 SINE B2 0 216 13 2 979 2239 238 57 81 chr5 51667413 51668281 -100868978 + RMER17B LTR ERVK 5 851 -107 2 979 254 336 9 45 chr5 51668801 51668913 -100868346 + PB1D9 SINE Alu 11 118 -2 2 979 181 365 111 9 chr5 51669908 51670016 -100867243 - L2b LINE L2 0 3375 3257 2 979 2625 280 67 80 chr5 51671051 51672147 -100865112 + L1MC3 LINE L1 6132 7172 -613 2 979 603 0 0 0 chr5 51672147 51672214 -100865045 + (GTTTG)n Simple_repeat Simple_repeat 4 70 0 2 979 2625 280 67 80 chr5 51672214 51672689 -100864570 + L1MC3 LINE L1 7173 7682 -103 2 979 522 0 0 0 chr5 51672983 51673041 -100864218 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 2 979 5504 100 5 20 chr5 51673213 51674317 -100862942 - Lx3_Mus LINE L1 -811 6198 5117 2 979 5210 111 11 10 chr5 51674317 51675115 -100862144 + Lx3_Mus LINE L1 6200 6998 -11 2 979 303 378 14 27 chr5 51675287 51675434 -100861825 - MamRep605 Unknown Unknown -226 650 506 2 979 222 322 0 54 chr5 51675582 51675674 -100861585 + MER5B DNA MER1_type 19 105 -73 2 979 436 259 228 6 chr5 51677304 51677475 -100859784 + B3 SINE B2 2 210 -6 2 979 260 167 14 0 chr5 51677481 51677553 -100859706 + GA-rich Low_complexity Low_complexity 2 74 0 2 979 195 350 54 40 chr5 51677746 51677895 -100859364 - L2c LINE L2 -53 3334 3184 2 979 495 371 102 70 chr5 51678914 51679384 -100857875 - MLT1F2 LTR MaLR -62 498 14 2 979 277 184 103 26 chr5 51679514 51679592 -100857667 - MLT1A1 LTR MaLR -13 395 312 2 979 237 287 116 121 chr5 51679603 51679793 -100857466 - MLT1A1 LTR MaLR -197 211 23 2 979 233 209 42 104 chr5 51680303 51680399 -100856860 + MIR SINE MIR 139 228 -34 2 979 204 314 167 50 chr5 51681433 51681631 -100855628 + L2c LINE L2 3136 3356 -31 2 979 202 139 23 0 chr5 51683056 51683099 -100854160 + T-rich Low_complexity Low_complexity 4 47 0 2 979 615 314 44 57 chr5 51683385 51683854 -100853405 + RMER15 LTR ERVL 12 566 -9 2 979 26 30 0 0 chr5 51684019 51684052 -100853207 + AT_rich Low_complexity Low_complexity 1 33 0 2 979 783 251 10 44 chr5 51684060 51684264 -100852995 - B3A SINE B2 0 198 2 2 979 553 231 109 50 chr5 51684268 51684563 -100852696 - L1M3 LINE L1 -1698 4445 4130 2 979 477 0 0 0 chr5 51684882 51684935 -100852324 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 979 369 0 0 0 chr5 51684935 51684975 -100852284 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 979 663 321 32 26 chr5 51684989 51685178 -100852081 - B4 SINE B4 -20 272 83 2 979 420 312 30 35 chr5 51685338 51685537 -100851722 + L1MA6 LINE L1 5910 6107 -193 2 979 234 0 0 0 chr5 51686673 51686699 -100850560 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 979 206 351 39 13 chr5 51687314 51687392 -100849867 + L2b LINE L2 3296 3375 0 2 979 263 319 33 41 chr5 51689619 51689740 -100847519 - Charlie8 DNA MER1_type -2158 270 151 2 979 635 271 104 0 chr5 51689755 51689947 -100847312 - B3 SINE B2 -2 214 3 2 979 400 336 7 51 chr5 51689991 51690129 -100847130 + B1F SINE Alu 3 134 -15 2 979 254 298 15 117 chr5 51690011 51690148 -100847111 + ID_B1 SINE B4 102 224 0 2 979 23 54 0 0 chr5 51690931 51690968 -100846291 + AT_rich Low_complexity Low_complexity 1 37 0 2 979 418 267 132 8 chr5 51691096 51691217 -100846042 + MER20 DNA MER1_type 2 137 -82 2 979 1055 341 21 0 chr5 51691476 51691816 -100845443 - MTE2b LTR MaLR -17 362 16 2 979 23 0 0 0 chr5 51692213 51692236 -100845023 + AT_rich Low_complexity Low_complexity 1 23 0 2 979 990 307 25 14 chr5 51692488 51692772 -100844487 - B4A SINE B4 0 292 6 2 979 1725 225 58 2 chr5 51692775 51692789 -100844470 - RMER10A LTR ERVL -20 422 409 2 979 1308 79 0 0 chr5 51692789 51692967 -100844292 + (GGAGA)n Simple_repeat Simple_repeat 2 179 0 2 979 1725 225 58 2 chr5 51692967 51693349 -100843910 - RMER10A LTR ERVL -34 408 5 2 979 391 265 52 57 chr5 51693462 51693654 -100843605 - L1MA8 LINE L1 -278 6013 5823 2 979 504 231 0 28 chr5 51693674 51693781 -100843478 - B1_Mur2 SINE Alu -6 143 40 2 979 231 339 70 31 chr5 51695524 51695652 -100841607 + MER96B DNA hAT 13 145 -272 2 979 225 0 0 0 chr5 51696292 51696317 -100840942 + (A)n Simple_repeat Simple_repeat 1 25 0 3 979 236 287 99 69 chr5 51697302 51697433 -100839826 - MLT2B4 LTR ERVL -63 499 365 3 979 627 14 0 0 chr5 51697514 51697586 -100839673 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 979 548 256 69 19 chr5 51697587 51697746 -100839513 - MLT2B4 LTR ERVL -369 187 21 3 979 3081 67 0 0 chr5 51698069 51698458 -100838801 - L1Md_F2 LINE L1 -305 6277 5889 3 979 624 67 0 63 chr5 51698458 51698569 -100838690 + L1Md_F2 LINE L1 6479 6582 0 3 979 22 35 0 0 chr5 51698712 51698741 -100838518 + AT_rich Low_complexity Low_complexity 1 29 0 3 979 2063 205 24 160 chr5 51699733 51700396 -100836863 + RMER20B LTR ERVK 50 622 -5 3 979 488 241 107 45 chr5 51700593 51700771 -100836488 + B3A SINE B2 4 192 -6 3 979 1003 181 268 48 chr5 51700829 51701101 -100836158 - MT2A LTR ERVL -81 452 121 3 979 414 0 0 0 chr5 51701103 51701149 -100836110 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 979 981 278 33 101 chr5 51701859 51702372 -100834887 + RLTR12B LTR ERVK 47 524 -4 3 979 273 377 55 38 chr5 51702481 51702718 -100834541 + Charlie2a DNA MER1_type 93 333 -2528 3 979 1685 288 95 28 chr5 51702697 51703560 -100833699 + Charlie2a DNA MER1_type 1845 2765 -96 3 979 234 0 0 0 chr5 51703800 51703826 -100833433 + (A)n Simple_repeat Simple_repeat 1 26 0 3 979 1579 212 129 11 chr5 51703852 51704295 -100832964 + Lx9 LINE L1 7149 7643 -1 3 979 383 284 240 35 chr5 51704739 51705041 -100832218 - ORR1D2 LTR MaLR -4 366 3 3 979 762 128 175 12 chr5 51705142 51705182 -100832077 - B2_Mm2 SINE B2 0 195 151 3 979 324 0 0 0 chr5 51705182 51705218 -100832041 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 979 762 128 175 12 chr5 51705218 51705343 -100831916 - B2_Mm2 SINE B2 -45 150 4 3 979 251 259 0 0 chr5 51705772 51705826 -100831433 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 979 2597 208 25 2 chr5 51706627 51707175 -100830084 - RLTR31_Mm LTR ERVK 0 561 1 3 979 1739 235 22 8 chr5 51707980 51708349 -100828910 + ORR1D1 LTR MaLR 1 374 0 3 979 461 322 105 48 chr5 51708349 51708701 -100828558 + L1M5 LINE L1 5372 5743 -381 3 979 195 129 0 0 chr5 51708787 51708818 -100828441 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 979 242 219 0 15 chr5 51708834 51708899 -100828360 + GA-rich Low_complexity Low_complexity 1 64 0 3 979 294 73 0 0 chr5 51709267 51709308 -100827951 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 979 183 80 0 0 chr5 51709308 51709332 -100827927 + (CATATA)n Simple_repeat Simple_repeat 3 27 0 3 979 399 366 46 14 chr5 51709365 51709584 -100827675 + Tigger5 DNA MER2_type 21 246 -2160 3 979 718 326 192 29 chr5 51709664 51710386 -100826873 - MER63C DNA AcHobo -86 844 1 3 979 273 295 26 0 chr5 51710907 51710985 -100826274 - ID2 SINE ID -1 82 3 3 979 283 327 86 47 chr5 51711056 51711733 -100825526 - L1MEg LINE L1 -4873 1211 509 3 979 22 70 0 0 chr5 51712359 51712402 -100824857 + AT_rich Low_complexity Low_complexity 1 43 0 3 979 861 196 122 29 chr5 51712590 51712795 -100824464 + URR1B DNA MER1_type 1 224 -1 3 979 1661 185 51 94 chr5 51712904 51713298 -100823961 - ORR1C1 LTR MaLR -1 377 1 3 979 205 295 42 59 chr5 51714088 51714207 -100823052 - L3b LINE CR1 -351 131 15 3 979 21 0 0 0 chr5 51714539 51714560 -100822699 + AT_rich Low_complexity Low_complexity 1 21 0 3 979 345 82 0 0 chr5 51715456 51715505 -100821754 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 979 1613 5 0 0 chr5 51715679 51715865 -100821394 + L1Md_A LINE L1 6397 6582 0 3 979 186 333 67 42 chr5 51716229 51716348 -100820911 - MIRb SINE MIR -41 227 106 3 979 3413 27 0 0 chr5 51716645 51717052 -100820207 - L1_Mm LINE L1 -1159 4724 4318 3 979 2419 22 0 0 chr5 51717051 51717328 -100819931 + L1Md_F2 LINE L1 5309 5585 -298 3 979 8114 39 1 3 chr5 51717329 51718310 -100818949 + L1Md_F2 LINE L1 5587 6565 -17 3 979 598 318 56 15 chr5 51718428 51718623 -100818636 - B3 SINE B2 -12 204 2 3 979 269 298 75 22 chr5 51718869 51719003 -100818256 - L1MA7 LINE L1 -198 6093 5953 3 979 5594 113 45 5 chr5 51718994 51719913 -100817346 - L1Md_T LINE L1 0 6582 5657 3 979 296 274 89 57 chr5 51720438 51720562 -100816697 - B1F SINE Alu -21 128 1 3 979 242 282 0 82 chr5 51720501 51720586 -100816673 - B4A SINE B4 -151 141 64 3 979 1409 266 82 0 chr5 51721556 51721909 -100815350 + MTD LTR MaLR 1 382 -37 3 979 1239 286 72 15 chr5 51722002 51722619 -100814640 - L1MA5A LINE L1 -205 5974 5325 3 979 417 299 30 24 chr5 51722669 51722837 -100814422 - L1MA5A LINE L1 -873 5270 5102 3 979 298 237 0 14 chr5 51722839 51722980 -100814279 + (TG)n Simple_repeat Simple_repeat 2 140 0 3 979 418 239 11 0 chr5 51723025 51723201 -100814058 + (TG)n Simple_repeat Simple_repeat 1 178 0 3 979 1588 289 50 24 chr5 51723201 51724047 -100813212 - L1MA5A LINE L1 -1032 5111 4244 3 979 342 0 0 0 chr5 51724327 51724365 -100812894 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 979 483 18 0 0 chr5 51724365 51724420 -100812839 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 979 184 122 24 24 chr5 51724694 51724736 -100812523 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 979 375 23 0 0 chr5 51724736 51724780 -100812479 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 979 481 325 127 53 chr5 51725066 51725388 -100811871 + MLT1A0 LTR MaLR 20 365 0 3 979 1515 237 86 8 chr5 51726421 51726795 -100810464 - MTD LTR MaLR -15 404 2 3 979 241 209 29 43 chr5 51726807 51726877 -100810382 + GA-rich Low_complexity Low_complexity 4 72 0 3 979 3109 72 0 9 chr5 51726967 51727386 -100809873 - L1Md_F2 LINE L1 -5 6577 6163 3 979 198 0 0 0 chr5 51729002 51729024 -100808235 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 979 234 0 0 0 chr5 51729786 51729812 -100807447 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 979 360 94 0 0 chr5 51730689 51730742 -100806517 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 979 3216 54 0 10 chr5 51730768 51731181 -100806078 - L1Md_F2 LINE L1 -1 6581 6173 3 979 208 366 134 0 chr5 51731217 51731359 -100805900 - MIR SINE MIR -61 201 41 3 979 1325 0 0 0 chr5 51731360 51731555 -100805704 - L1Md_T LINE L1 0 6582 6429 3 979 245 338 91 39 chr5 51731727 51731881 -100805378 + MLT1M LTR MaLR 129 290 -382 3 979 2139 315 86 22 chr5 51731901 51733056 -100804203 + Lx8 LINE L1 6208 7436 -37 3 979 407 280 52 173 chr5 51733724 51734057 -100803202 + MER33 DNA MER1_type 35 324 0 3 979 240 347 0 0 chr5 51734160 51734235 -100803024 + ID4 SINE ID 4 78 -5 3 979 2640 115 17 12 chr5 51735616 51736031 -100801228 - Lx2 LINE L1 -317 6680 6264 3 979 5060 32 0 0 chr5 51736031 51736617 -100800642 + L1Md_T LINE L1 5995 6580 -2 3 979 238 91 0 0 chr5 51736617 51736661 -100800598 + Lx2 LINE L1 6953 6996 -1 3 979 22 0 0 0 chr5 51736752 51736774 -100800485 + AT_rich Low_complexity Low_complexity 1 22 0 3 979 190 176 19 19 chr5 51738384 51738436 -100798823 + GA-rich Low_complexity Low_complexity 1 52 0 3 979 519 66 0 0 chr5 51739175 51739251 -100798008 + (TG)n Simple_repeat Simple_repeat 1 76 0 3 979 268 303 67 11 chr5 51740209 51740299 -100796960 + MIR SINE MIR 119 213 -49 3 979 245 341 143 17 chr5 51740913 51741138 -100796121 + MIR SINE MIR 3 249 -13 3 979 297 51 0 0 chr5 51741728 51741767 -100795492 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 979 351 0 0 0 chr5 51741767 51741805 -100795454 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 979 387 0 0 0 chr5 51743805 51743848 -100793411 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 979 243 0 0 0 chr5 51743990 51744017 -100793242 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 979 3765 239 14 77 chr5 51744036 51745087 -100792172 - Lx6 LINE L1 -305 7155 6171 3 979 629 315 150 61 chr5 51745192 51745764 -100791495 - Lx8 LINE L1 -221 7252 6630 3 979 208 299 157 9 chr5 51746004 51746112 -100791147 - MIR SINE MIR -17 245 122 3 979 400 371 63 78 chr5 51746497 51746766 -100790493 - MTE2b LTR MaLR -114 265 1 3 979 1289 71 0 6 chr5 51749746 51749929 -100787330 + L1Md_F2 LINE L1 6399 6580 -2 3 979 369 0 0 0 chr5 51750089 51750130 -100787129 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 979 330 295 31 0 chr5 51752125 51752254 -100785005 + (CATA)n Simple_repeat Simple_repeat 3 135 0 3 979 220 235 20 10 chr5 51752274 51752373 -100784886 + (CATA)n Simple_repeat Simple_repeat 4 103 0 3 979 689 325 54 13 chr5 51752399 51752694 -100784565 + MER2 DNA MER2_type 24 338 -7 3 979 1286 247 34 53 chr5 51752754 51753134 -100784125 + ORR1D1 LTR MaLR 1 373 -1 3 979 201 121 0 0 chr5 51753245 51753278 -100783981 + (GGAAA)n Simple_repeat Simple_repeat 3 35 0 3 979 620 276 120 8 chr5 51753295 51753536 -100783723 - MLT2C2 LTR ERVL -195 269 2 3 979 2688 208 44 0 chr5 51754110 51754673 -100782586 - Lx5 LINE L1 -302 6748 6161 3 979 1105 70 28 0 chr5 51754778 51754920 -100782339 + B1_Mm SINE Alu 1 146 -1 3 979 529 194 243 6 chr5 51755202 51755383 -100781876 + URR1B DNA MER1_type 1 224 -1 3 979 213 385 62 0 chr5 51755762 51755858 -100781401 - L2b LINE L2 -12 3363 3262 3 979 26 0 0 0 chr5 51756222 51756248 -100781011 + AT_rich Low_complexity Low_complexity 1 26 0 3 979 257 118 20 0 chr5 51756391 51756442 -100780817 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 979 3152 325 60 35 chr5 51756445 51758108 -100779151 - Lx8 LINE L1 -172 7301 5597 3 979 26 0 0 0 chr5 51758150 51758176 -100779083 + AT_rich Low_complexity Low_complexity 1 26 0 3 979 911 247 58 35 chr5 51758189 51758338 -100778921 - MT2B LTR ERVL -58 543 304 3 979 653 36 0 12 chr5 51758338 51758423 -100778836 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 3 979 911 265 117 45 chr5 51758423 51758690 -100778569 - MT2B LTR ERVL -209 392 4 3 979 334 306 10 2 chr5 51758703 51758863 -100778396 - Lx8 LINE L1 -661 5636 5444 3 979 270 306 0 14 chr5 51758969 51759042 -100778217 + ID4_ SINE ID 2 73 -10 3 979 378 0 0 0 chr5 51759042 51759084 -100778175 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 979 242 56 28 0 chr5 51759430 51759466 -100777793 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 979 21 36 0 0 chr5 51759513 51759541 -100777718 + AT_rich Low_complexity Low_complexity 1 28 0 4 979 248 294 125 43 chr5 51759615 51759788 -100777471 + MIR3 SINE MIR 4 186 -22 4 979 25746 147 13 15 chr5 51760156 51765647 -100771612 + L1_Mus3 LINE L1 503 5977 -661 4 979 10218 73 1 1 chr5 51765646 51767040 -100770219 + L1_Mm LINE L1 4341 5734 -149 4 979 37382 7 24 0 chr5 51767041 51772413 -100764846 + L1_Mus3 LINE L1 214 5586 -297 4 979 9071 2 0 0 chr5 51772413 51773409 -100763850 + L1Md_A LINE L1 5587 6582 0 4 122 37382 44 61 9 chr5 51773409 51773686 -100763573 + L1_Mus3 LINE L1 5587 5992 -646 4 980 1133 125 0 25 chr5 51773686 51773883 -100763376 + L1Md_F2 LINE L1 6391 6582 0 4 980 4849 98 106 23 chr5 51773883 51774447 -100762812 + L1_Mus3 LINE L1 5993 6631 -7 4 980 342 0 0 0 chr5 51774611 51774649 -100762610 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4 980 284 293 69 62 chr5 51775422 51775559 -100761700 - MLT1A0 LTR MaLR -226 133 1 4 980 550 307 182 12 chr5 51776266 51776513 -100760746 - B4 SINE B4 -2 290 2 4 980 23 33 0 0 chr5 51776624 51776654 -100760605 + AT_rich Low_complexity Low_complexity 1 30 0 4 980 473 0 0 17 chr5 51777932 51777990 -100759269 + (TAA)n Simple_repeat Simple_repeat 1 57 0 4 980 203 292 6 12 chr5 51778537 51778614 -100758645 - MIR SINE MIR -76 186 111 4 980 270 106 0 0 chr5 51779539 51779586 -100757673 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 980 549 0 0 0 chr5 51779587 51779648 -100757611 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 980 261 0 0 0 chr5 51779898 51779927 -100757332 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 980 681 269 28 33 chr5 51781040 51781255 -100756004 - ID_B1 SINE B4 -8 216 3 4 980 21 0 0 0 chr5 51783581 51783602 -100753657 + AT_rich Low_complexity Low_complexity 1 21 0 4 980 815 229 0 7 chr5 51784393 51784547 -100752712 + RSINE1 SINE B4 11 163 -2 4 980 486 0 0 0 chr5 51784814 51784868 -100752391 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 980 23 54 0 0 chr5 51785088 51785125 -100752134 + AT_rich Low_complexity Low_complexity 1 37 0 4 980 237 316 92 0 chr5 51785135 51785211 -100752048 - ID4_ SINE ID 0 83 1 4 980 593 308 121 6 chr5 51785334 51785507 -100751752 + B3 SINE B2 1 193 -23 4 980 270 56 0 0 chr5 51785507 51785543 -100751716 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 980 220 333 106 18 chr5 51785804 51785917 -100751342 - B1F SINE Alu -22 127 5 4 980 222 331 32 85 chr5 51786023 51786211 -100751048 + MIRb SINE MIR 71 248 -20 4 980 495 0 0 0 chr5 51790132 51790187 -100747072 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 980 355 198 121 0 chr5 51790191 51790282 -100746977 - PB1D9 SINE Alu -16 104 3 4 980 1230 244 71 74 chr5 51790398 51790441 -100746818 - RLTR41 LTR ERV1 -53 393 352 4 980 5068 60 5 18 chr5 51790441 51791102 -100746157 - L1_Mus1 LINE L1 0 6567 5916 4 980 1230 244 71 74 chr5 51791102 51791452 -100745807 - RLTR41 LTR ERV1 -95 351 2 4 980 203 61 30 0 chr5 51791471 51791504 -100745755 + (TTG)n Simple_repeat Simple_repeat 3 36 0 4 980 2139 209 35 5 chr5 51792092 51792496 -100744763 - MTC LTR MaLR -5 416 1 4 980 1286 277 116 96 chr5 51792497 51793136 -100744123 + Lx5 LINE L1 6359 7010 -40 4 980 632 108 0 19 chr5 51793163 51793258 -100744001 + (GAAA)n Simple_repeat Simple_repeat 3 97 0 4 980 1226 76 0 6 chr5 51793258 51793430 -100743829 + (GAGAA)n Simple_repeat Simple_repeat 5 175 0 4 980 632 108 0 19 chr5 51793430 51793438 -100743821 + (GAAA)n Simple_repeat Simple_repeat 2 8 0 4 980 267 322 123 20 chr5 51794402 51794548 -100742711 + MIRb SINE MIR 21 181 -87 4 980 396 228 142 0 chr5 51795463 51795590 -100741669 - MER103 DNA DNA -7 159 15 4 980 1239 235 37 20 chr5 51796288 51796583 -100740676 + ORR1D1 LTR MaLR 8 307 -67 4 980 234 0 0 0 chr5 51796587 51796613 -100740646 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 980 213 332 112 51 chr5 51796979 51797293 -100739966 - L2 LINE L2 -481 2938 2606 4 980 263 318 32 57 chr5 51798259 51798416 -100738843 - MIRc SINE MIR -88 180 28 4 980 378 0 0 0 chr5 51798556 51798598 -100738661 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 980 464 270 73 51 chr5 51798775 51799069 -100738190 - RMER15 LTR ERVL -154 421 1 4 980 996 9 0 0 chr5 51800083 51800196 -100737063 + (TCTCC)n Simple_repeat Simple_repeat 1 113 0 4 980 300 263 110 34 chr5 51801335 51801453 -100735806 + MIRb SINE MIR 124 250 -18 4 980 384 303 155 9 chr5 51802939 51803152 -100734107 + L1MB7 LINE L1 5862 6105 -79 4 980 396 0 0 0 chr5 51803343 51803387 -100733872 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 980 211 194 0 43 chr5 51804618 51804688 -100732571 + (CATATA)n Simple_repeat Simple_repeat 1 67 0 4 980 225 0 0 0 chr5 51805481 51805506 -100731753 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 980 624 70 0 0 chr5 51805627 51805713 -100731546 + (TG)n Simple_repeat Simple_repeat 1 86 0 4 980 442 267 53 143 chr5 51805832 51806077 -100731182 + MLT1C LTR MaLR 168 467 0 4 980 291 390 75 31 chr5 51806843 51807002 -100730257 + LTR33 LTR ERVL 29 194 -321 4 980 636 269 98 89 chr5 51807649 51807889 -100729370 - ORR1E LTR MaLR -30 329 83 4 980 2057 206 17 14 chr5 51807889 51808308 -100728951 - MTC LTR MaLR 0 421 2 4 980 636 269 98 89 chr5 51808308 51808393 -100728866 - ORR1E LTR MaLR -277 82 1 4 980 276 288 41 54 chr5 51809982 51810224 -100727035 - L1ME1 LINE L1 -233 5946 5708 4 980 270 73 0 0 chr5 51810383 51810424 -100726835 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 4 980 990 250 63 7 chr5 51810483 51810769 -100726490 - Lx8 LINE L1 -221 7252 6951 4 980 1246 246 23 23 chr5 51811035 51811339 -100725920 - Lx5 LINE L1 -11 7039 6736 4 980 395 268 93 0 chr5 51811358 51811552 -100725707 - L1ME1 LINE L1 -710 5469 5258 4 980 289 240 27 0 chr5 51811567 51811642 -100725617 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 4 980 440 291 117 0 chr5 51811774 51811953 -100725306 - B3 SINE B2 -13 203 4 4 980 969 72 0 0 chr5 51814013 51814152 -100723107 + (TC)n Simple_repeat Simple_repeat 1 139 0 4 980 386 332 84 51 chr5 51814280 51814651 -100722608 + L2b LINE L2 3002 3387 0 4 980 695 192 241 0 chr5 51816527 51816751 -100720508 + Lx9 LINE L1 7361 7638 -6 4 980 24 0 0 0 chr5 51817044 51817068 -100720191 + AT_rich Low_complexity Low_complexity 1 24 0 4 980 390 185 0 0 chr5 51817215 51817296 -100719963 + (TGGA)n Simple_repeat Simple_repeat 1 81 0 4 980 24 0 0 0 chr5 51817495 51817519 -100719740 + AT_rich Low_complexity Low_complexity 1 24 0 4 980 253 258 65 43 chr5 51818483 51818576 -100718683 - MLT1A1 LTR MaLR -275 133 39 4 980 225 94 0 0 chr5 51819229 51819261 -100717998 + (T)n Simple_repeat Simple_repeat 1 32 0 4 980 491 45 60 0 chr5 51819261 51819328 -100717931 - B1_Mm SINE Alu 0 147 77 4 980 413 341 73 39 chr5 51819315 51819574 -100717685 + MLT1J-int LTR MaLR 1063 1330 -57 4 980 786 48 0 0 chr5 51819585 51819688 -100717571 + (CA)n Simple_repeat Simple_repeat 2 104 0 4 980 1366 124 129 22 chr5 51819878 51820150 -100717109 + Lx LINE L1 6348 6648 -6 4 980 274 319 42 49 chr5 51820810 51820952 -100716307 - MER117 DNA MER1_type -47 150 10 4 980 1776 53 8 35 chr5 51821086 51821114 -100716145 - L1Md_F2 LINE L1 -1 6581 6560 4 980 387 0 0 0 chr5 51821114 51821157 -100716102 + (TTA)n Simple_repeat Simple_repeat 1 43 0 4 980 1776 53 8 35 chr5 51821157 51821382 -100715877 - L1Md_F2 LINE L1 -23 6559 6335 4 980 4094 36 0 0 chr5 51821382 51821887 -100715372 + L1Md_F2 LINE L1 5840 6344 -238 4 980 652 307 108 5 chr5 51821888 51822091 -100715168 - B4A SINE B4 -68 224 1 4 980 31 58 0 0 chr5 51822870 51822922 -100714337 + AT_rich Low_complexity Low_complexity 1 52 0 4 980 369 0 0 0 chr5 51824375 51824416 -100712843 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 980 737 370 44 26 chr5 51824416 51824987 -100712272 - Lx8 LINE L1 -146 7327 6747 4 980 247 284 25 0 chr5 51825078 51825159 -100712100 + GA-rich Low_complexity Low_complexity 2 84 0 4 980 180 0 0 0 chr5 51825737 51825757 -100711502 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 980 642 253 29 69 chr5 51827368 51827572 -100709687 + B3A SINE B2 2 197 -1 4 980 207 0 0 0 chr5 51827657 51827680 -100709579 + (A)n Simple_repeat Simple_repeat 1 23 0 4 980 390 21 0 0 chr5 51827905 51827952 -100709307 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 980 884 337 51 33 chr5 51828224 51828675 -100708584 + MT2A LTR ERVL 3 461 -72 4 980 291 136 0 0 chr5 51829896 51829955 -100707304 + (TC)n Simple_repeat Simple_repeat 2 60 0 4 980 200 391 0 0 chr5 51829955 51830047 -100707212 + (TG)n Simple_repeat Simple_repeat 2 93 0 4 980 24 0 0 0 chr5 51830464 51830488 -100706771 + AT_rich Low_complexity Low_complexity 1 24 0 4 980 648 238 48 0 chr5 51830498 51830624 -100706635 - RSINE1 SINE B4 -33 132 1 4 980 432 0 0 0 chr5 51832136 51832184 -100705075 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 980 510 315 8 0 chr5 51832184 51832314 -100704945 - B3A SINE B2 -57 141 11 4 980 204 163 0 0 chr5 51833932 51833975 -100703284 + T-rich Low_complexity Low_complexity 4 46 0 4 980 189 363 21 32 chr5 51834171 51834265 -100702994 - MIRb SINE MIR -82 186 94 4 980 189 0 0 0 chr5 51836840 51836861 -100700398 + (CAA)n Simple_repeat Simple_repeat 2 22 0 4 980 207 0 0 0 chr5 51837542 51837565 -100699694 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 980 804 262 29 5 chr5 51838608 51838815 -100698444 + B3 SINE B2 1 212 -4 4 980 24 0 0 0 chr5 51839370 51839394 -100697865 + AT_rich Low_complexity Low_complexity 1 24 0 4 980 264 395 74 17 chr5 51839645 51839820 -100697439 + Tigger5 DNA MER2_type 2 186 -2220 4 980 2953 64 28 5 chr5 51840226 51840617 -100696642 - MTB LTR MaLR 0 400 1 4 980 288 111 0 0 chr5 51841311 51841365 -100695894 + (CAAAAA)n Simple_repeat Simple_repeat 1 54 0 5 980 22 0 0 0 chr5 51846067 51846089 -100691170 + AT_rich Low_complexity Low_complexity 1 22 0 5 980 204 172 0 0 chr5 51847027 51847085 -100690174 + A-rich Low_complexity Low_complexity 1 58 0 5 980 26 0 0 0 chr5 51847256 51847282 -100689977 + AT_rich Low_complexity Low_complexity 1 26 0 5 980 477 28 42 0 chr5 51848622 51848693 -100688566 + (GA)n Simple_repeat Simple_repeat 2 75 0 5 980 24 0 0 0 chr5 51848885 51848909 -100688350 + AT_rich Low_complexity Low_complexity 1 24 0 5 980 372 77 0 0 chr5 51849057 51849109 -100688150 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 980 346 39 39 0 chr5 51849239 51849291 -100687968 + (TTG)n Simple_repeat Simple_repeat 2 55 0 5 980 21 36 0 0 chr5 51849748 51849776 -100687483 + AT_rich Low_complexity Low_complexity 1 28 0 5 980 180 312 65 0 chr5 51850436 51850513 -100686746 + L3b LINE CR1 324 405 -77 5 980 183 290 29 14 chr5 51850855 51850925 -100686334 + L2a LINE L2 3348 3418 -8 5 980 778 238 56 25 chr5 51851236 51851434 -100685825 - B3 SINE B2 -11 205 2 5 980 181 350 113 8 chr5 51852091 51852215 -100685044 - MIRc SINE MIR -123 145 9 5 980 187 282 40 40 chr5 51855001 51855075 -100682184 - MER5A DNA MER1_type -2 187 114 5 980 252 59 0 0 chr5 51855082 51855116 -100682143 + (A)n Simple_repeat Simple_repeat 1 34 0 5 980 189 0 0 0 chr5 51855168 51855189 -100682070 + (TA)n Simple_repeat Simple_repeat 1 21 0 5 980 426 304 66 56 chr5 51856767 51856980 -100680279 - B3 SINE B2 -1 215 1 5 980 250 323 21 78 chr5 51859016 51859157 -100678102 - RMER12 LTR ERVK -466 856 724 5 980 244 261 43 9 chr5 51859477 51859593 -100677666 - L1MA10 LINE L1 -1 6333 6214 5 980 552 42 0 0 chr5 51859624 51859695 -100677564 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 980 410 269 122 0 chr5 51861160 51861357 -100675902 - Charlie5 DNA MER1_type -1 2623 2403 5 980 468 287 0 0 chr5 51862989 51863111 -100674148 + MER117 DNA MER1_type 29 150 -47 5 980 816 11 0 0 chr5 51863697 51863790 -100673469 + (GAA)n Simple_repeat Simple_repeat 1 93 0 5 980 22 0 0 0 chr5 51866108 51866130 -100671129 + AT_rich Low_complexity Low_complexity 1 22 0 5 980 26 0 0 0 chr5 51866181 51866207 -100671052 + AT_rich Low_complexity Low_complexity 1 26 0 5 980 28 0 0 0 chr5 51866963 51866991 -100670268 + AT_rich Low_complexity Low_complexity 1 28 0 5 980 644 318 38 68 chr5 51867570 51867855 -100669404 + B4A SINE B4 15 284 -8 5 980 240 265 24 12 chr5 51867866 51867950 -100669309 + (CA)n Simple_repeat Simple_repeat 1 85 0 5 980 222 136 0 0 chr5 51868025 51868069 -100669190 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 980 324 19 37 19 chr5 51869325 51869379 -100667880 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 5 980 441 50 0 0 chr5 51870189 51870249 -100667010 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 5 980 213 146 0 0 chr5 51870394 51870442 -100666817 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 980 408 88 0 0 chr5 51870442 51870499 -100666760 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 980 304 354 64 59 chr5 51870791 51870995 -100666264 - MamRep38 DNA hAT -89 206 2 5 980 250 328 32 24 chr5 51871300 51871425 -100665834 + L3b LINE CR1 247 372 -110 5 980 441 342 70 32 chr5 51871555 51871586 -100665673 - RSINE1 SINE B4 0 165 136 5 980 333 0 0 0 chr5 51871586 51871623 -100665636 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 980 441 342 70 32 chr5 51871623 51871748 -100665511 - RSINE1 SINE B4 -30 135 3 5 980 3508 10 0 0 chr5 51871923 51872318 -100664941 + L1Md_A LINE L1 5192 5586 -297 5 980 8849 12 0 0 chr5 51872318 51873314 -100663945 + L1Md_A LINE L1 5587 6582 0 5 980 386 279 111 6 chr5 51873749 51873911 -100663348 + Lx8 LINE L1 7043 7221 -252 5 980 708 12 0 0 chr5 51873934 51874015 -100663244 + (TTC)n Simple_repeat Simple_repeat 1 81 0 5 980 537 88 0 0 chr5 51874074 51874154 -100663105 + (TG)n Simple_repeat Simple_repeat 2 81 0 5 980 648 270 30 6 chr5 51875092 51875256 -100662003 - MER117 DNA MER1_type -24 173 6 5 980 1563 98 0 0 chr5 51875670 51875885 -100661374 - L1_Mus3 LINE L1 -217 6419 6205 5 980 1276 97 46 0 chr5 51875885 51876080 -100661179 + L1_Mus3 LINE L1 6428 6631 -7 5 980 28 61 0 0 chr5 51876080 51876129 -100661130 + AT_rich Low_complexity Low_complexity 1 49 0 5 980 247 232 0 51 chr5 51876381 51876440 -100660819 - MADE2 DNA Mariner 0 80 25 5 980 207 258 16 16 chr5 51877330 51877393 -100659866 - MIRb SINE MIR -12 256 194 5 980 22 0 0 0 chr5 51877559 51877581 -100659678 + AT_rich Low_complexity Low_complexity 1 22 0 5 980 269 257 51 51 chr5 51877689 51877767 -100659492 + ID2 SINE ID 2 79 -4 5 980 492 99 0 0 chr5 51877767 51877838 -100659421 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 5 980 990 243 24 19 chr5 51877839 51878049 -100659210 + B3 SINE B2 6 216 0 5 980 21 0 0 0 chr5 51878353 51878374 -100658885 + AT_rich Low_complexity Low_complexity 1 21 0 5 980 592 265 50 61 chr5 51879452 51879633 -100657626 + B3A SINE B2 38 216 0 5 980 201 265 0 68 chr5 51879655 51879728 -100657531 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 5 980 1134 74 8 11 chr5 51880229 51880587 -100656672 + (TAGA)n Simple_repeat Simple_repeat 1 356 0 5 980 537 16 0 0 chr5 51883847 51883909 -100653350 + (GA)n Simple_repeat Simple_repeat 1 62 0 5 980 789 201 21 36 chr5 51885204 51885407 -100651852 + B3 SINE B2 2 193 -2 5 980 280 269 55 46 chr5 51887671 51887780 -100649479 - PB1D10 SINE Alu -7 110 1 5 980 264 143 0 0 chr5 51888549 51888605 -100648654 + (A)n Simple_repeat Simple_repeat 1 56 0 5 980 24 32 0 0 chr5 51888833 51888864 -100648395 + AT_rich Low_complexity Low_complexity 1 31 0 5 980 954 138 154 0 chr5 51892780 51892975 -100644284 + URR1A DNA MER1_type 2 226 0 5 980 336 127 0 0 chr5 51894843 51894898 -100642361 + (TTG)n Simple_repeat Simple_repeat 3 57 0 5 980 411 202 0 0 chr5 51895613 51895702 -100641557 + (TA)n Simple_repeat Simple_repeat 1 89 0 5 980 192 281 18 0 chr5 51897331 51897388 -100639871 - L3 LINE CR1 -4359 130 73 5 980 1008 122 0 0 chr5 51898002 51898266 -100638993 + (GAA)n Simple_repeat Simple_repeat 1 264 0 5 980 1105 260 49 74 chr5 51898521 51898911 -100638348 - Lx8 LINE L1 -2 7471 7092 5 980 302 268 0 14 chr5 51899439 51899511 -100637748 + GA-rich Low_complexity Low_complexity 1 71 0 5 980 401 250 48 9 chr5 51901171 51901276 -100635983 - L2a LINE L2 -7 3419 3311 5 980 471 271 65 12 chr5 51901577 51901745 -100635514 + MER5B DNA MER1_type 1 177 -1 5 980 726 72 0 0 chr5 51901949 51902046 -100635213 + (TC)n Simple_repeat Simple_repeat 2 98 0 5 980 323 45 0 22 chr5 51902046 51902092 -100635167 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 5 980 1082 88 0 0 chr5 51902117 51902253 -100635006 - B1_Mus2 SINE Alu -9 138 3 5 980 391 0 56 0 chr5 51902374 51902428 -100634831 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 5 980 21 0 0 0 chr5 51903527 51903548 -100633711 + AT_rich Low_complexity Low_complexity 1 21 0 5 980 219 69 0 0 chr5 51903990 51904019 -100633240 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 5 981 21 0 0 0 chr5 51905303 51905324 -100631935 + AT_rich Low_complexity Low_complexity 1 21 0 5 981 419 291 48 60 chr5 51905784 51905952 -100631307 - MER5A1 DNA MER1_type 0 166 1 5 981 195 42 0 0 chr5 51906063 51906087 -100631172 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5 981 474 250 29 9 chr5 51906237 51906342 -100630917 - RSINE1 SINE B4 -56 109 3 5 981 2227 120 0 42 chr5 51906497 51906879 -100630380 - Lx2 LINE L1 0 6997 6632 5 981 402 308 7 22 chr5 51907531 51907667 -100629592 + Lx8 LINE L1 6960 7093 -380 5 981 256 274 48 0 chr5 51907661 51907745 -100629514 - Lx8 LINE L1 -1000 6473 6386 5 981 183 42 0 0 chr5 51908056 51908080 -100629179 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 981 1340 82 5 35 chr5 51908397 51908598 -100628661 - B2_Mm2 SINE B2 0 195 1 5 981 387 345 63 9 chr5 51908849 51909071 -100628188 + MIR SINE MIR 28 261 -1 5 981 2110 45 0 22 chr5 51909473 51909746 -100627513 - L1Md_F3 LINE L1 -1 6583 6317 5 981 483 314 24 0 chr5 51911879 51912003 -100625256 + RSINE1 SINE B4 3 129 -36 5 981 312 91 0 0 chr5 51912611 51912655 -100624604 + (ATG)n Simple_repeat Simple_repeat 2 45 0 5 981 201 415 0 9 chr5 51912915 51913022 -100624237 + L2c LINE L2 3281 3386 -1 5 981 21 36 0 0 chr5 51913514 51913542 -100623717 + AT_rich Low_complexity Low_complexity 1 28 0 5 981 32 57 0 0 chr5 51913618 51913671 -100623588 + AT_rich Low_complexity Low_complexity 1 53 0 5 981 525 104 0 0 chr5 51914543 51914620 -100622639 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 5 981 26 0 0 0 chr5 51915353 51915379 -100621880 + AT_rich Low_complexity Low_complexity 1 26 0 5 981 3092 43 0 3 chr5 51915448 51915822 -100621437 + L1Md_F2 LINE L1 6198 6570 -12 5 981 476 259 53 86 chr5 51915828 51915980 -100621279 + B4 SINE B4 77 223 -69 5 981 927 133 0 0 chr5 51915848 51915983 -100621276 + B1_Mus1 SINE Alu 14 148 0 5 981 232 48 23 23 chr5 51915989 51916032 -100621227 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 5 981 298 209 72 118 chr5 51916155 51916307 -100620952 + RLTR11A2 LTR ERVK 6 150 -377 5 981 191 280 174 47 chr5 51917272 51917358 -100619901 + MIR SINE MIR 54 150 -58 5 981 270 0 0 0 chr5 51917552 51917582 -100619677 + (A)n Simple_repeat Simple_repeat 1 30 0 5 981 354 194 103 0 chr5 51920280 51920366 -100616893 - RLTR33 LTR ERVK -43 672 573 5 981 571 303 0 68 chr5 51921251 51921485 -100615774 + ID_B1 SINE B4 1 218 -6 6 981 195 162 0 0 chr5 51924345 51924382 -100612877 + (CTA)n Simple_repeat Simple_repeat 2 38 0 6 981 237 401 48 17 chr5 51924846 51925077 -100612182 - Tigger15a DNA TcMar -477 238 1 6 981 252 0 0 0 chr5 51925767 51925795 -100611464 + (A)n Simple_repeat Simple_repeat 1 28 0 6 981 522 0 0 0 chr5 51927534 51927592 -100609667 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 981 25 31 0 0 chr5 51927761 51927793 -100609466 + AT_rich Low_complexity Low_complexity 1 32 0 6 981 837 125 12 42 chr5 51931185 51931262 -100605997 + L1_Mus3 LINE L1 6476 6549 -89 6 981 3420 33 2 0 chr5 51931262 51931657 -100605602 - MTA_Mm LTR MaLR 0 396 1 6 981 837 125 12 42 chr5 51931657 51931746 -100605513 + L1_Mus3 LINE L1 6550 6637 -1 6 981 291 28 0 0 chr5 51932450 51932486 -100604773 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 981 360 228 0 12 chr5 51932671 51932751 -100604508 + ID4_ SINE ID 2 80 -3 6 981 28 29 0 0 chr5 51932760 51932795 -100604464 + AT_rich Low_complexity Low_complexity 1 35 0 6 981 284 293 107 55 chr5 51933001 51933163 -100604096 - RMER17A LTR ERVK -170 581 403 6 981 393 22 0 0 chr5 51933163 51933209 -100604050 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 981 284 293 107 55 chr5 51933209 51933335 -100603924 - RMER17A LTR ERVK -349 402 279 6 981 734 32 11 0 chr5 51934528 51934621 -100602638 + (TA)n Simple_repeat Simple_repeat 2 95 0 6 981 255 31 0 0 chr5 51936098 51936130 -100601129 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 981 250 250 157 59 chr5 51936206 51936308 -100600951 - PB1D9 SINE Alu -8 112 1 6 981 667 272 95 0 chr5 51936308 51936391 -100600868 - B4A SINE B4 -191 101 3 6 981 665 310 28 18 chr5 51937349 51937566 -100599693 - MER20 DNA MER1_type 0 219 1 6 981 294 349 18 28 chr5 51938413 51938522 -100598737 + MIRb SINE MIR 32 139 -129 6 981 267 29 0 0 chr5 51938523 51938536 -100598723 + (TA)n Simple_repeat Simple_repeat 1 13 0 6 981 513 0 0 0 chr5 51938536 51938593 -100598666 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 981 267 29 0 0 chr5 51938593 51938613 -100598646 + (TA)n Simple_repeat Simple_repeat 1 20 0 6 981 1051 95 0 0 chr5 51940368 51940505 -100596754 + B1_Mus1 SINE Alu 2 138 -10 6 981 354 45 0 0 chr5 51940505 51940549 -100596710 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 981 396 0 0 0 chr5 51940861 51940905 -100596354 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 981 231 36 0 0 chr5 51942290 51942318 -100594941 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 981 21 0 0 0 chr5 51945433 51945454 -100591805 + AT_rich Low_complexity Low_complexity 1 21 0 6 981 952 83 0 14 chr5 51945663 51945809 -100591450 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 6 981 450 0 0 0 chr5 51946722 51946772 -100590487 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 981 294 29 0 0 chr5 51947445 51947480 -100589779 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 6 981 258 32 0 0 chr5 51947498 51947529 -100589730 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 6 981 414 0 0 0 chr5 51947945 51947991 -100589268 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 981 512 15 15 0 chr5 51947991 51948055 -100589204 + (TG)n Simple_repeat Simple_repeat 1 66 0 6 981 324 143 0 0 chr5 51948689 51948745 -100588514 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 981 256 390 50 6 chr5 51952324 51952484 -100584775 + MIR3 SINE MIR 16 182 -26 6 981 21 0 0 0 chr5 51953196 51953217 -100584042 + AT_rich Low_complexity Low_complexity 1 21 0 6 981 25 0 0 0 chr5 51953566 51953591 -100583668 + AT_rich Low_complexity Low_complexity 1 25 0 6 981 25 31 0 0 chr5 51953836 51953868 -100583391 + AT_rich Low_complexity Low_complexity 1 32 0 6 981 336 344 74 52 chr5 51954807 51954906 -100582353 + L1ME3A LINE L1 5797 5889 -284 6 981 180 0 0 0 chr5 51954906 51954926 -100582333 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 981 336 344 74 52 chr5 51954926 51955191 -100582068 + L1ME3A LINE L1 5890 6168 -5 6 981 209 33 33 0 chr5 51955411 51955441 -100581818 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 981 201 122 24 24 chr5 51956026 51956068 -100581191 + A-rich Low_complexity Low_complexity 2 43 0 6 981 282 29 0 0 chr5 51956069 51956104 -100581155 + (T)n Simple_repeat Simple_repeat 1 35 0 6 981 1005 134 0 0 chr5 51956125 51956267 -100580992 + B1_Mus1 SINE Alu 2 143 -5 6 981 507 264 112 0 chr5 51956760 51956957 -100580302 + MER33 DNA MER1_type 104 322 -2 6 981 252 0 0 0 chr5 51958386 51958414 -100578845 + (A)n Simple_repeat Simple_repeat 1 28 0 6 981 264 91 0 0 chr5 51960415 51960459 -100576800 + (TGG)n Simple_repeat Simple_repeat 1 44 0 6 981 203 377 39 69 chr5 51960520 51960751 -100576508 - MIR SINE MIR -30 232 9 6 981 452 138 135 22 chr5 51961524 51961613 -100575646 + PB1D9 SINE Alu 22 120 0 6 981 486 0 0 0 chr5 51963589 51963643 -100573616 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 981 243 103 0 0 chr5 51964192 51964231 -100573028 + (A)n Simple_repeat Simple_repeat 1 39 0 6 981 21 0 0 0 chr5 51964298 51964319 -100572940 + AT_rich Low_complexity Low_complexity 1 21 0 6 981 247 393 34 14 chr5 51965000 51965147 -100572112 - MIR SINE MIR -92 170 21 6 981 546 255 0 0 chr5 51966174 51966280 -100570979 - PB1D7 SINE Alu -12 108 3 6 981 513 251 117 27 chr5 51966494 51966682 -100570577 - B3 SINE B2 -11 205 1 6 981 192 77 0 0 chr5 51968224 51968250 -100569009 + (A)n Simple_repeat Simple_repeat 1 26 0 6 981 216 280 12 74 chr5 51968485 51968566 -100568693 - B4A SINE B4 -211 81 6 6 981 232 286 63 0 chr5 51968860 51968923 -100568336 + ID2 SINE ID 15 81 -2 6 981 461 162 0 24 chr5 51968937 51969019 -100568240 + ID2 SINE ID 2 81 -2 6 981 366 23 0 0 chr5 51969104 51969147 -100568112 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 981 194 33 0 62 chr5 51969161 51969193 -100568066 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 6 981 232 27 54 0 chr5 51969667 51969704 -100567555 + (GA)n Simple_repeat Simple_repeat 1 39 0 6 981 224 337 11 21 chr5 51969704 51969734 -100567525 + polypurine Low_complexity Low_complexity 1 31 0 6 981 1251 86 0 0 chr5 51969734 51969908 -100567351 + (GGAGA)n Simple_repeat Simple_repeat 2 175 0 6 981 224 337 11 21 chr5 51969908 51969971 -100567288 + polypurine Low_complexity Low_complexity 32 93 0 6 981 423 298 59 33 chr5 51970200 51970393 -100566866 + MIR SINE MIR 40 231 -37 6 981 360 298 46 29 chr5 51970527 51970700 -100566559 - L1ME4a LINE L1 -1 6123 5948 6 981 203 269 0 0 chr5 51970892 51970944 -100566315 + MIRc SINE MIR 213 264 -4 6 981 297 297 0 11 chr5 51972004 51972096 -100565163 - L2a LINE L2 -1 3425 3335 6 981 450 0 0 0 chr5 51972318 51972368 -100564891 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 981 468 0 0 0 chr5 51974834 51974886 -100562373 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 981 185 329 84 12 chr5 51976101 51976184 -100561075 - L4 LINE RTE -1476 553 465 6 981 213 39 0 0 chr5 51977076 51977102 -100560157 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 6 981 569 61 12 0 chr5 51977151 51977233 -100560026 + (GAAA)n Simple_repeat Simple_repeat 3 85 0 6 981 283 259 99 41 chr5 51981795 51981916 -100555343 - MIR SINE MIR -2 260 133 6 981 371 301 51 29 chr5 51983620 51983757 -100553502 + MIR SINE MIR 71 210 -52 6 981 268 324 138 0 chr5 51983788 51983933 -100553326 + MIRb SINE MIR 23 187 -81 6 981 21 36 0 0 chr5 51984259 51984287 -100552972 + AT_rich Low_complexity Low_complexity 1 28 0 6 981 855 269 83 53 chr5 51986210 51986491 -100550768 + B4A SINE B4 9 292 0 6 981 180 314 67 44 chr5 51987508 51987598 -100549661 - L3 LINE CR1 -500 3989 3898 6 981 610 254 7 14 chr5 51987765 51987905 -100549354 + B1_Mus2 SINE Alu 1 139 -8 6 981 746 293 135 12 chr5 51988454 51988713 -100548546 - Tigger7 DNA MER2_type -2198 293 3 6 981 486 0 0 0 chr5 51989188 51989242 -100548017 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 981 333 0 0 0 chr5 51989610 51989647 -100547612 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 6 981 201 94 0 0 chr5 51990238 51990270 -100546989 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 6 981 318 67 0 0 chr5 51992192 51992237 -100545022 + (TCC)n Simple_repeat Simple_repeat 1 45 0 6 981 242 301 0 98 chr5 51992920 51993012 -100544247 + B4 SINE B4 2 84 -208 6 981 1019 75 0 15 chr5 51993083 51993219 -100544040 + B1_Mm SINE Alu 13 146 -1 6 981 1036 168 92 19 chr5 51993381 51993588 -100543671 + URR1A DNA MER1_type 5 226 0 6 981 435 315 122 22 chr5 51995356 51995677 -100541582 + L1M5 LINE L1 5444 5796 -328 6 981 329 164 68 0 chr5 51995733 51995806 -100541453 + Lx8 LINE L1 7391 7468 -5 6 981 296 373 52 17 chr5 51995946 51996178 -100541081 + Lx8 LINE L1 6969 7208 -265 6 981 333 0 0 0 chr5 51996347 51996384 -100540875 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 6 981 3286 46 2 2 chr5 51996420 51996816 -100540443 + MTA_Mm LTR MaLR 1 396 0 6 981 723 309 98 12 chr5 51997030 51997511 -100539748 + L1MC3 LINE L1 7205 7726 -59 6 981 794 92 8 8 chr5 51997700 51997831 -100539428 + Lx LINE L1 6523 6653 -1 6 981 261 303 87 39 chr5 51997997 51998112 -100539147 + MIR SINE MIR 65 189 -87 6 981 610 47 0 23 chr5 51998199 51998287 -100538972 + (TCC)n Simple_repeat Simple_repeat 2 87 0 6 981 812 121 8 0 chr5 51998589 51998721 -100538538 + (GA)n Simple_repeat Simple_repeat 2 134 0 6 981 186 43 0 0 chr5 52000124 52000147 -100537112 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 981 298 75 37 19 chr5 52000151 52000205 -100537054 + (CATA)n Simple_repeat Simple_repeat 4 58 0 2 981 353 317 71 98 chr5 52001051 52001306 -100535953 - MIRb SINE MIR -3 265 18 3 981 396 0 0 0 chr5 52001978 52002022 -100535237 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 981 892 293 81 58 chr5 52002046 52002405 -100534854 + MTE2b LTR MaLR 6 372 -7 5 981 230 293 125 33 chr5 52002605 52002725 -100534534 + MamRep1879 DNA hAT? 1 131 -85 6 981 729 189 42 0 chr5 52004779 52004922 -100532337 + B1_Mur4 SINE Alu 2 150 0 7 981 501 285 165 4 chr5 52006615 52006851 -100530408 + B4A SINE B4 1 274 -18 8 981 406 299 17 25 chr5 52007390 52007510 -100529749 - Arthur1B DNA Tip100 -1091 134 16 9 981 227 260 68 0 chr5 52008646 52008719 -100528540 + ID4 SINE ID 3 80 -3 1 981 3443 36 12 0 chr5 52009297 52009709 -100527550 + L1Md_A LINE L1 6165 6581 -1 1 981 1538 268 23 6 chr5 52009963 52010316 -100526943 - ORR1D2 LTR MaLR 0 370 12 1 981 30 27 0 0 chr5 52010334 52010371 -100526888 + AT_rich Low_complexity Low_complexity 1 37 0 1 981 558 287 38 19 chr5 52010386 52010546 -100526713 - RSINE1 SINE B4 -1 164 2 1 981 201 74 0 0 chr5 52010876 52010903 -100526356 + (T)n Simple_repeat Simple_repeat 1 27 0 1 981 22 0 0 0 chr5 52011115 52011137 -100526122 + AT_rich Low_complexity Low_complexity 1 22 0 1 981 283 146 0 0 chr5 52011933 52011981 -100525278 - MER58B DNA MER1_type -144 197 150 1 981 382 306 102 0 chr5 52012139 52012237 -100525022 - PB1 SINE Alu -9 118 11 1 981 327 288 149 14 chr5 52012395 52012536 -100524723 - MER5A1 DNA MER1_type -2 164 5 1 981 262 290 71 45 chr5 52012548 52012660 -100524599 - Tigger5 DNA MER2_type 0 2406 2292 2 981 785 274 37 37 chr5 52014194 52014437 -100522822 + Lx8 LINE L1 7116 7358 -115 2 981 22 35 0 0 chr5 52014942 52014971 -100522288 + AT_rich Low_complexity Low_complexity 1 29 0 2 981 458 282 54 113 chr5 52016791 52016995 -100520264 + MER20 DNA MER1_type 27 218 -1 2 981 281 400 0 0 chr5 52017623 52017713 -100519546 + (CGTG)n Simple_repeat Simple_repeat 1 90 0 2 981 637 250 83 24 chr5 52017784 52017952 -100519307 - B3A SINE B2 -19 179 2 2 981 255 206 95 14 chr5 52019042 52019116 -100518143 - MIR3 SINE MIR -40 168 89 2 981 22 0 0 0 chr5 52019310 52019332 -100517927 + AT_rich Low_complexity Low_complexity 1 22 0 2 981 200 61 0 57 chr5 52021343 52021378 -100515881 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 2 981 228 375 0 0 chr5 52021410 52021474 -100515785 - tRNA-Ala-GCA tRNA tRNA -6 69 6 2 981 666 288 36 40 chr5 52021856 52022185 -100515074 + L1MA5 LINE L1 5954 6281 -19 3 981 455 219 42 77 chr5 52023513 52023681 -100513578 + MER3 DNA MER1_type 40 201 -8 3 981 899 282 145 69 chr5 52024880 52025296 -100511963 - Lx8 LINE L1 -5 7468 7018 3 981 1102 96 0 0 chr5 52025296 52025442 -100511817 - B1_Mm SINE Alu 0 147 2 3 981 899 282 145 69 chr5 52025442 52025562 -100511697 - Lx8 LINE L1 -456 7017 6891 3 981 236 390 0 12 chr5 52026554 52026637 -100510622 - MIR SINE MIR -95 113 32 3 981 852 121 0 0 chr5 52027314 52027446 -100509813 + (TTCC)n Simple_repeat Simple_repeat 4 135 0 3 981 21 0 0 0 chr5 52030126 52030147 -100507112 + AT_rich Low_complexity Low_complexity 1 21 0 3 981 21 0 0 0 chr5 52032073 52032094 -100505165 + AT_rich Low_complexity Low_complexity 1 21 0 3 981 623 78 0 11 chr5 52033532 52033623 -100503636 + (GAAA)n Simple_repeat Simple_repeat 3 92 0 3 981 21 0 0 0 chr5 52034085 52034106 -100503153 + AT_rich Low_complexity Low_complexity 1 21 0 3 981 498 17 0 0 chr5 52035203 52035262 -100501997 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 982 985 178 119 0 chr5 52036176 52036378 -100500881 + URR1A DNA MER1_type 1 226 0 4 982 21 57 0 0 chr5 52037516 52037551 -100499708 + AT_rich Low_complexity Low_complexity 1 35 0 4 982 715 318 45 41 chr5 52037552 52037772 -100499487 + MER58A DNA MER1_type 4 224 0 4 982 21 57 0 0 chr5 52039166 52039201 -100498058 + AT_rich Low_complexity Low_complexity 1 35 0 4 982 186 379 48 36 chr5 52039308 52039475 -100497784 - MIRc SINE MIR -69 199 31 4 982 199 325 88 34 chr5 52039617 52039821 -100497438 + L3b LINE CR1 30 244 -238 4 982 1150 78 0 0 chr5 52040197 52040338 -100496921 + B1_Mus2 SINE Alu 2 142 -5 4 982 549 0 0 0 chr5 52040342 52040403 -100496856 + (GAAA)n Simple_repeat Simple_repeat 2 62 0 4 982 426 85 0 0 chr5 52040403 52040462 -100496797 + (GGGGA)n Simple_repeat Simple_repeat 3 61 0 4 982 1180 11 0 72 chr5 52040462 52041046 -100496213 + (GAGAA)n Simple_repeat Simple_repeat 1 541 0 5 982 285 29 0 0 chr5 52041046 52041080 -100496179 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 5 982 293 284 57 50 chr5 52041172 52041313 -100495946 + ORR1E LTR MaLR 50 191 -168 5 982 5442 76 28 8 chr5 52041324 52041747 -100495512 - L1_Mus1 LINE L1 0 6567 6139 5 982 3581 15 0 0 chr5 52041747 52042143 -100495116 - MTA_Mm LTR MaLR 0 396 1 5 982 5442 76 28 8 chr5 52042143 52042447 -100494812 - L1_Mus1 LINE L1 -429 6138 5826 5 982 4338 72 2 0 chr5 52042447 52043033 -100494226 + L1_Mus1 LINE L1 5286 5872 -11 5 982 438 244 39 54 chr5 52043083 52043213 -100494046 + ORR1E LTR MaLR 228 355 -4 5 982 238 366 8 82 chr5 52043352 52043474 -100493785 + MIR SINE MIR 36 148 -60 5 982 21 0 0 0 chr5 52043579 52043600 -100493659 + AT_rich Low_complexity Low_complexity 1 21 0 5 982 225 0 0 0 chr5 52043844 52043869 -100493390 + (T)n Simple_repeat Simple_repeat 1 25 0 5 982 1494 324 70 39 chr5 52043928 52044786 -100492473 + Lx8 LINE L1 6559 7443 -30 5 982 263 374 65 30 chr5 52044880 52045048 -100492211 - MIRb SINE MIR -45 223 50 5 982 22 0 0 0 chr5 52045899 52045921 -100491338 + AT_rich Low_complexity Low_complexity 1 22 0 6 982 255 203 0 0 chr5 52046121 52046180 -100491079 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 982 2450 46 3 0 chr5 52046963 52047265 -100489994 - L1Md_T LINE L1 0 6582 6280 6 982 426 286 108 4 chr5 52047881 52047998 -100489261 + L1MA5A LINE L1 5662 5795 -502 6 982 998 228 14 9 chr5 52047998 52048211 -100489048 + B3 SINE B2 3 216 0 6 982 426 286 108 4 chr5 52048211 52048325 -100488934 + L1MA5A LINE L1 5796 5916 -381 6 982 639 201 0 0 chr5 52048850 52048984 -100488275 + GA-rich Low_complexity Low_complexity 4 137 0 6 982 321 26 0 0 chr5 52049321 52049359 -100487900 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 982 462 296 35 101 chr5 52050184 52050353 -100486906 + RSINE1 SINE B4 8 165 0 6 982 252 306 69 43 chr5 52050762 52050878 -100486381 - MIRc SINE MIR -119 149 31 6 982 182 367 68 44 chr5 52051679 52051927 -100485332 - MIRb SINE MIR -6 262 9 6 982 368 333 38 57 chr5 52053917 52054076 -100483183 + MER117 DNA MER1_type 1 156 -41 7 982 263 314 57 0 chr5 52055026 52055096 -100482163 + PB1D10 SINE Alu 36 109 -8 7 982 198 0 0 0 chr5 52055555 52055577 -100481682 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 982 364 291 22 22 chr5 52056868 52057005 -100480254 + CT-rich Low_complexity Low_complexity 3 139 0 7 982 185 198 24 24 chr5 52057021 52057104 -100480155 + CT-rich Low_complexity Low_complexity 4 86 0 7 982 315 302 0 9 chr5 52059650 52059757 -100477502 + PB1D10 SINE Alu 7 112 -5 7 982 413 150 25 0 chr5 52059897 52059977 -100477282 + A-rich Low_complexity Low_complexity 2 83 0 7 982 203 316 29 87 chr5 52060483 52060587 -100476672 - L2 LINE L2 -556 2863 2766 7 982 2130 182 55 2 chr5 52061426 52061823 -100475436 - MTC LTR MaLR -3 418 1 7 982 344 156 221 0 chr5 52062208 52062285 -100474974 - RMER1A Other Other -898 132 39 7 982 2686 180 25 25 chr5 52062334 52062857 -100474402 + RMER1B Other Other 541 1063 -3 7 982 442 226 0 0 chr5 52064222 52064306 -100472953 - RSINE1 SINE B4 0 165 82 8 982 329 234 89 45 chr5 52064441 52064553 -100472706 + MER104 DNA Tc2 65 181 0 8 982 198 103 0 0 chr5 52064625 52064654 -100472605 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 8 982 333 0 0 0 chr5 52067809 52067846 -100469413 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 8 982 204 241 0 33 chr5 52068519 52068579 -100468680 + (CACG)n Simple_repeat Simple_repeat 1 58 0 8 982 1230 49 0 0 chr5 52070029 52070191 -100467068 + (TTGG)n Simple_repeat Simple_repeat 2 163 0 8 982 23 54 0 0 chr5 52070207 52070244 -100467015 + AT_rich Low_complexity Low_complexity 1 37 0 8 982 1067 245 63 8 chr5 52070269 52070524 -100466735 + B4A SINE B4 24 292 0 8 982 282 116 0 0 chr5 52070535 52070578 -100466681 + (CATA)n Simple_repeat Simple_repeat 4 46 0 8 982 426 317 133 20 chr5 52071851 52072099 -100465160 - MLT1E1 LTR MaLR 0 654 379 8 982 411 100 0 0 chr5 52072250 52072320 -100464939 + (TC)n Simple_repeat Simple_repeat 1 70 0 9 982 2027 148 35 27 chr5 52072320 52072687 -100464572 - Lx LINE L1 0 6654 6285 9 982 203 220 0 20 chr5 52073053 52073104 -100464155 + (TA)n Simple_repeat Simple_repeat 2 51 0 9 982 371 48 0 8 chr5 52073219 52073278 -100463981 - MTC LTR MaLR 0 421 314 9 982 265 237 17 17 chr5 52074257 52074317 -100462942 + ID SINE ID 9 68 -156 9 982 870 285 44 18 chr5 52075171 52075446 -100461813 + B4A SINE B4 5 286 -6 9 982 568 154 8 17 chr5 52075509 52075628 -100461631 + C-rich Low_complexity Low_complexity 5 122 0 9 982 204 125 0 0 chr5 52076192 52076224 -100461035 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 982 517 184 20 101 chr5 52080283 52080378 -100456881 + RMER17C LTR ERVK 91 184 -226 9 982 1102 64 11 23 chr5 52080378 52080554 -100456705 + (TTCTC)n Simple_repeat Simple_repeat 5 178 0 9 982 517 184 20 101 chr5 52080554 52080657 -100456602 + RMER17C LTR ERVK 185 273 -137 9 982 1071 120 0 0 chr5 52080659 52080826 -100456433 + (GAAA)n Simple_repeat Simple_repeat 4 170 0 1 982 396 0 0 0 chr5 52081064 52081108 -100456151 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 982 623 331 66 4 chr5 52081142 52081385 -100455874 - B4A SINE B4 -27 265 8 1 982 374 57 0 19 chr5 52082652 52082706 -100454553 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 982 1181 193 9 26 chr5 52082879 52083108 -100454151 + URR1A DNA MER1_type 2 226 0 1 982 765 33 0 0 chr5 52085564 52085656 -100451603 + (TC)n Simple_repeat Simple_repeat 2 93 0 1 982 186 250 0 0 chr5 52086532 52086588 -100450671 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 1 982 240 352 16 16 chr5 52086693 52086817 -100450442 + MIR SINE MIR 110 233 -29 1 982 191 273 81 46 chr5 52087240 52087383 -100449876 - MIRb SINE MIR -5 263 110 1 982 666 37 0 0 chr5 52088882 52088963 -100448296 + (GAGAA)n Simple_repeat Simple_repeat 4 84 0 1 982 612 0 0 0 chr5 52088964 52089032 -100448227 + (GGGA)n Simple_repeat Simple_repeat 2 69 0 1 982 183 255 198 30 chr5 52092228 52092329 -100444930 + MIR SINE MIR 27 144 -64 1 982 356 294 0 3 chr5 52092352 52092455 -100444804 - MIR SINE MIR -108 154 55 1 982 267 31 0 0 chr5 52092577 52092609 -100444650 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 982 875 294 34 15 chr5 52093409 52093672 -100443587 + B4 SINE B4 4 271 -21 1 982 894 45 0 0 chr5 52093673 52093784 -100443475 + (TG)n Simple_repeat Simple_repeat 2 112 0 1 982 628 273 0 7 chr5 52093786 52093926 -100443333 - B1F SINE Alu -4 145 7 1 982 266 324 58 90 chr5 52093789 52093945 -100443314 - B4 SINE B4 -73 219 69 1 982 373 294 64 64 chr5 52094154 52094310 -100442949 + MIR SINE MIR 35 190 -72 1 982 430 287 150 46 chr5 52094358 52094818 -100442441 + L1ME3A LINE L1 5461 5968 -205 1 982 318 80 0 0 chr5 52095815 52095865 -100441394 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 982 205 246 35 0 chr5 52097718 52097775 -100439484 - MIR3 SINE MIR -37 171 113 1 982 384 77 0 0 chr5 52099142 52099194 -100438065 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 982 627 214 83 0 chr5 52099673 52099818 -100437441 + LTR33 LTR ERVL 357 513 -2 1 982 305 295 18 108 chr5 52099837 52100004 -100437255 - Charlie4z DNA MER1_type 0 167 16 1 982 537 311 6 24 chr5 52100135 52100300 -100436959 + B3A SINE B2 3 164 -34 1 982 228 111 0 0 chr5 52100303 52100339 -100436920 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 982 723 75 0 0 chr5 52100339 52100446 -100436813 + (GA)n Simple_repeat Simple_repeat 1 107 0 1 982 214 136 45 0 chr5 52104407 52104451 -100432808 + CT-rich Low_complexity Low_complexity 2 47 0 1 982 24 0 0 0 chr5 52105931 52105955 -100431304 + AT_rich Low_complexity Low_complexity 1 24 0 1 982 200 148 53 53 chr5 52106951 52107008 -100430251 + A-rich Low_complexity Low_complexity 2 58 0 1 982 263 247 116 21 chr5 52107459 52107554 -100429705 - ORR1E LTR MaLR -21 338 235 1 982 1031 241 45 19 chr5 52108879 52109145 -100428114 - MTE2a LTR MaLR 0 379 107 1 982 484 286 43 0 chr5 52109141 52109281 -100427978 + B4A SINE B4 145 290 -2 1 982 558 29 0 0 chr5 52109282 52109350 -100427909 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 982 261 0 0 0 chr5 52109350 52109378 -100427881 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 982 441 0 0 0 chr5 52110655 52110704 -100426555 + (CATA)n Simple_repeat Simple_repeat 3 51 0 1 982 225 0 0 0 chr5 52111719 52111744 -100425515 + (A)n Simple_repeat Simple_repeat 1 25 0 1 982 651 278 72 7 chr5 52112404 52112556 -100424703 + RSINE1 SINE B4 3 164 -1 1 982 1491 246 83 0 chr5 52112802 52113127 -100424132 + ORR1D2 LTR MaLR 3 354 -16 1 982 1307 85 0 3 chr5 52113594 52113891 -100423368 + (TC)n Simple_repeat Simple_repeat 1 295 0 1 982 180 0 0 0 chr5 52114818 52114838 -100422421 + (A)n Simple_repeat Simple_repeat 1 20 0 1 982 359 279 54 54 chr5 52115812 52115960 -100421299 + MIRb SINE MIR 69 216 -52 1 982 21 0 0 0 chr5 52118031 52118052 -100419207 + AT_rich Low_complexity Low_complexity 1 21 0 1 982 336 94 0 0 chr5 52118269 52118322 -100418937 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 982 843 89 0 0 chr5 52119470 52119605 -100417654 + (TG)n Simple_repeat Simple_repeat 2 136 0 1 982 843 315 79 0 chr5 52121480 52121772 -100415487 + MER58B DNA MER1_type 26 340 -1 1 982 630 139 0 0 chr5 52121883 52122020 -100415239 + (TC)n Simple_repeat Simple_repeat 2 138 0 1 982 180 213 0 0 chr5 52122035 52122096 -100415163 + CT-rich Low_complexity Low_complexity 2 62 0 1 982 45 55 0 0 chr5 52122940 52123013 -100414246 + AT_rich Low_complexity Low_complexity 1 73 0 1 982 505 270 36 14 chr5 52123013 52123152 -100414107 - B1F SINE Alu -7 142 1 1 982 356 307 6 74 chr5 52124182 52124358 -100412901 - HAL1 LINE L1 -516 2508 2345 1 982 207 0 0 0 chr5 52124386 52124409 -100412850 + (TGG)n Simple_repeat Simple_repeat 1 23 0 1 982 542 86 12 0 chr5 52125536 52125617 -100411642 + (GA)n Simple_repeat Simple_repeat 2 83 0 1 982 287 254 0 14 chr5 52126452 52126524 -100410735 - MIRc SINE MIR -115 153 83 1 982 486 96 0 0 chr5 52126609 52126682 -100410577 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 982 400 295 26 20 chr5 52127057 52127209 -100410050 - HAL1 LINE L1 -281 2226 2074 1 982 246 207 0 0 chr5 52127321 52127379 -100409880 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 982 354 299 114 70 chr5 52127388 52127615 -100409644 - HAL1 LINE L1 -597 1910 1674 1 982 1065 214 97 116 chr5 52127857 52128238 -100409021 + ORR1D1 LTR MaLR 1 374 0 1 982 21 0 0 0 chr5 52128239 52128260 -100408999 + AT_rich Low_complexity Low_complexity 1 21 0 1 982 344 291 167 56 chr5 52128599 52128850 -100408409 - HAL1 LINE L1 -1821 686 408 1 982 308 209 198 23 chr5 52129538 52129688 -100407571 - L1P5 LINE L1 -673 5521 5352 1 982 468 0 0 0 chr5 52129736 52129788 -100407471 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 982 989 296 39 35 chr5 52129908 52130192 -100407067 - B4A SINE B4 -7 285 1 1 982 1068 286 21 14 chr5 52131591 52131871 -100405388 + B4A SINE B4 1 282 -10 1 982 288 0 0 0 chr5 52131879 52131911 -100405348 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 982 653 289 91 0 chr5 52132684 52132751 -100404508 - B4 SINE B4 -1 291 224 1 982 208 0 0 59 chr5 52132751 52132785 -100404474 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1 982 653 289 91 0 chr5 52132785 52132904 -100404355 - B4 SINE B4 -69 223 89 1 982 186 43 0 0 chr5 52132909 52132932 -100404327 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1 982 701 189 117 7 chr5 52132938 52133092 -100404167 - B2_Mm2 SINE B2 -23 172 2 1 982 350 302 20 40 chr5 52133092 52133183 -100404076 - B4 SINE B4 -202 90 2 1 982 496 302 36 0 chr5 52133253 52133392 -100403867 + B1F2 SINE Alu 4 147 -2 1 982 909 244 162 24 chr5 52134382 52134659 -100402600 + MTEa LTR MaLR 3 325 -54 1 982 321 26 0 0 chr5 52134659 52134697 -100402562 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 1 982 909 244 162 24 chr5 52134697 52134747 -100402512 + MTEa LTR MaLR 326 375 -4 1 982 561 333 7 26 chr5 52135434 52135585 -100401674 + B3A SINE B2 1 148 -50 1 982 1389 60 0 0 chr5 52135585 52136104 -100401155 + (CA)n Simple_repeat Simple_repeat 1 519 0 1 982 270 0 0 0 chr5 52136104 52136134 -100401125 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 982 233 356 51 0 chr5 52137042 52137160 -100400099 - MIRb SINE MIR -36 232 109 1 982 398 323 97 45 chr5 52137389 52137697 -100399562 + L3b LINE CR1 3 326 -156 1 982 857 231 48 48 chr5 52138541 52138648 -100398611 - B3 SINE B2 -1 215 115 1 982 1259 153 108 0 chr5 52138648 52138851 -100398408 + URR1A DNA MER1_type 2 226 0 1 982 857 231 48 48 chr5 52138851 52138952 -100398307 - B3 SINE B2 -102 114 7 1 982 193 312 62 0 chr5 52138955 52139019 -100398240 - MIR SINE MIR -63 145 78 1 982 560 125 10 0 chr5 52139809 52139905 -100397354 + (TCCC)n Simple_repeat Simple_repeat 3 99 0 1 982 472 237 41 41 chr5 52140703 52140848 -100396411 - MIR SINE MIR -44 218 74 1 982 253 263 178 34 chr5 52141284 52141402 -100395857 - L2c LINE L2 -1 3386 3252 1 982 305 269 8 119 chr5 52141477 52141595 -100395664 + PB1D10 SINE Alu 12 116 -1 1 982 290 262 210 16 chr5 52142711 52142835 -100394424 + MIRb SINE MIR 21 168 -100 1 982 450 0 0 0 chr5 52142840 52142890 -100394369 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 982 189 0 0 0 chr5 52143635 52143656 -100393603 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1 982 198 91 0 0 chr5 52143976 52144009 -100393250 + (TTGG)n Simple_repeat Simple_repeat 3 35 0 1 982 180 0 0 0 chr5 52145419 52145439 -100391820 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 982 203 0 0 36 chr5 52145909 52145937 -100391322 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 982 419 294 0 12 chr5 52145938 52146024 -100391235 - PB1D10 SINE Alu -13 104 20 1 982 294 373 0 19 chr5 52145952 52146056 -100391203 - ID_B1 SINE B4 -53 171 70 1 982 305 281 84 28 chr5 52146161 52146304 -100390955 + HAL1-3A_ME LINE L1 1977 2127 -731 1 982 855 291 80 32 chr5 52147749 52148087 -100389172 + MLT1C LTR MaLR 1 354 -113 1 982 720 341 118 36 chr5 52149260 52149878 -100387381 + Tigger13a DNA MER2_type 91 759 -12 1 982 210 37 0 0 chr5 52149893 52149920 -100387339 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 982 3060 101 8 0 chr5 52150532 52150929 -100386330 - MTB LTR MaLR 0 400 1 1 982 2096 82 0 18 chr5 52151523 52151807 -100385452 - Lx LINE L1 0 6654 6376 1 982 229 219 0 0 chr5 52153077 52153118 -100384141 - MIRm SINE MIR -15 261 221 1 982 921 306 83 6 chr5 52153997 52154310 -100382949 - MER2 DNA MER2_type -1 344 8 1 982 307 291 0 23 chr5 52154472 52154560 -100382699 - MIR SINE MIR -114 148 63 1 982 269 78 88 105 chr5 52156221 52156278 -100380981 + MIRc SINE MIR 94 149 -119 1 982 739 292 65 82 chr5 52156782 52157073 -100380186 + B4A SINE B4 1 286 -6 2 982 276 312 159 96 chr5 52158239 52158459 -100378800 + MLT1H LTR MaLR 42 275 -274 2 982 2825 137 2 0 chr5 52159968 52160400 -100376859 - L1_Mus1 LINE L1 -564 5319 4887 2 982 6932 79 48 1 chr5 52160393 52161587 -100375672 + L1_Mus1 LINE L1 5319 6567 0 2 982 277 225 65 13 chr5 52161790 52161900 -100375359 - MIR SINE MIR -84 184 63 2 982 950 147 98 0 chr5 52162337 52162500 -100374759 + URR1A DNA MER1_type 48 226 0 2 982 189 0 0 0 chr5 52163216 52163237 -100374022 + (A)n Simple_repeat Simple_repeat 1 21 0 2 982 423 0 0 0 chr5 52163840 52163887 -100373372 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 982 207 100 0 0 chr5 52163887 52163917 -100373342 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 2 982 466 242 55 55 chr5 52163931 52164058 -100373201 - B1F SINE Alu -20 129 3 2 982 264 359 55 49 chr5 52165312 52165476 -100371783 - MER102c DNA MER1_type -166 165 1 2 122 441 299 97 90 chr5 52166512 52166802 -100370457 + MLT1L LTR MaLR 210 501 -109 2 983 256 192 60 27 chr5 52167092 52167242 -100370017 + (TATG)n Simple_repeat Simple_repeat 3 157 0 2 983 400 280 29 36 chr5 52169993 52170130 -100367129 + ID_B1 SINE B4 81 216 -8 2 983 243 79 0 0 chr5 52170138 52170176 -100367083 + (CAAAAA)n Simple_repeat Simple_repeat 5 42 0 2 983 282 279 17 51 chr5 52172322 52172439 -100364820 + (CATA)n Simple_repeat Simple_repeat 4 116 0 2 983 335 23 23 0 chr5 52172808 52172852 -100364407 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 983 271 314 85 30 chr5 52173092 52173256 -100364003 - MIRb SINE MIR -57 211 39 2 983 974 247 6 96 chr5 52173311 52173633 -100363626 - MTEa LTR MaLR -12 367 75 2 983 335 294 213 9 chr5 52173689 52173905 -100363354 + MLT1A0 LTR MaLR 101 360 -5 2 983 897 37 0 0 chr5 52176278 52176387 -100360872 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 983 297 0 0 0 chr5 52177457 52177490 -100359769 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 983 1834 147 51 3 chr5 52178736 52179050 -100358209 + ORR1A4 LTR MaLR 1 329 0 2 983 218 299 45 71 chr5 52179059 52179214 -100358045 - MIRb SINE MIR -76 192 42 2 983 276 30 0 0 chr5 52179353 52179386 -100357873 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 983 252 0 0 0 chr5 52179386 52179413 -100357846 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 983 268 115 32 32 chr5 52179425 52179488 -100357771 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 2 983 303 232 0 0 chr5 52181297 52181379 -100355880 + GA-rich Low_complexity Low_complexity 3 84 0 2 983 248 331 41 41 chr5 52181987 52182132 -100355127 + MIR SINE MIR 84 228 -34 2 983 22 0 0 0 chr5 52183140 52183162 -100354097 + AT_rich Low_complexity Low_complexity 1 22 0 2 983 566 85 0 11 chr5 52184674 52184769 -100352490 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 2 983 414 0 0 0 chr5 52184915 52184961 -100352298 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 983 210 295 29 78 chr5 52185129 52185232 -100352027 - MIRb SINE MIR -47 221 124 2 983 261 0 0 0 chr5 52188464 52188493 -100348766 + (A)n Simple_repeat Simple_repeat 1 29 0 2 983 455 345 86 40 chr5 52189448 52189774 -100347485 + MLT1B LTR MaLR 1 341 -49 2 983 248 175 35 0 chr5 52190225 52190282 -100346977 + (TATG)n Simple_repeat Simple_repeat 1 59 0 2 983 531 0 0 0 chr5 52191306 52191365 -100345894 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 983 582 118 0 0 chr5 52191365 52191457 -100345802 + (TG)n Simple_repeat Simple_repeat 2 94 0 2 983 439 146 10 20 chr5 52191919 52192017 -100345242 + CT-rich Low_complexity Low_complexity 1 97 0 2 983 561 280 14 72 chr5 52192147 52192355 -100344904 - B3A SINE B2 0 198 3 2 983 620 284 5 19 chr5 52193865 52194055 -100343204 + B3A SINE B2 1 192 -24 2 983 338 324 96 70 chr5 52195055 52195453 -100341806 - L2a LINE L2 -38 3388 2981 2 983 601 221 38 0 chr5 52195560 52195691 -100341568 - B1_Mur2 SINE Alu -10 139 4 2 983 218 32 32 0 chr5 52195691 52195722 -100341537 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 983 878 125 0 0 chr5 52195722 52195850 -100341409 - B1_Mus1 SINE Alu -9 139 12 2 983 22 35 0 0 chr5 52195900 52195929 -100341330 + AT_rich Low_complexity Low_complexity 1 29 0 2 983 715 317 12 36 chr5 52196097 52196346 -100340913 + MTEb LTR MaLR 134 376 -3 2 983 241 258 76 0 chr5 52196588 52196654 -100340605 + B4A SINE B4 72 142 -150 2 983 542 220 6 6 chr5 52196601 52196722 -100340537 + PB1D10 SINE Alu 5 125 -24 2 983 186 43 0 0 chr5 52197790 52197813 -100339446 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 983 916 147 0 13 chr5 52198071 52198223 -100339036 + B1_Mur4 SINE Alu 1 150 0 2 983 189 195 0 0 chr5 52198835 52198876 -100338383 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 983 870 296 66 0 chr5 52199261 52199518 -100337741 + B4A SINE B4 3 276 -16 2 983 306 0 0 0 chr5 52199538 52199572 -100337687 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 983 453 50 0 0 chr5 52199572 52199631 -100337628 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 983 207 339 64 41 chr5 52200432 52200604 -100336655 + L2c LINE L2 3205 3380 -7 2 983 358 260 269 0 chr5 52201833 52201937 -100335322 - B4 SINE B4 -159 133 2 2 983 204 243 67 67 chr5 52202017 52202092 -100335167 - L2c LINE L2 -20 3367 3293 2 983 1106 284 94 37 chr5 52204220 52204799 -100332460 + Lx9 LINE L1 6890 7644 0 2 983 613 309 91 25 chr5 52205285 52205604 -100331655 - MLT1A LTR MaLR -16 358 19 2 983 558 280 195 12 chr5 52205948 52206021 -100331238 + B4 SINE B4 2 111 -181 2 983 441 0 0 0 chr5 52206021 52206070 -100331189 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 983 558 280 195 12 chr5 52206070 52206242 -100331017 + B4 SINE B4 112 291 -1 2 983 333 155 0 0 chr5 52208328 52208386 -100328873 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 983 445 231 19 0 chr5 52208419 52208527 -100328732 - B4A SINE B4 -8 284 175 2 983 211 320 57 49 chr5 52209875 52210008 -100327251 - MIRc SINE MIR -89 179 30 2 983 415 138 23 0 chr5 52210526 52210613 -100326646 + CT-rich Low_complexity Low_complexity 2 90 0 2 983 265 323 50 0 chr5 52210862 52210961 -100326298 + MIR SINE MIR 4 107 -155 2 983 3957 194 57 33 chr5 52211575 52212309 -100324950 + Lx9 LINE L1 6565 7342 -302 2 983 558 43 0 0 chr5 52212309 52212378 -100324881 + (GAAA)n Simple_repeat Simple_repeat 3 71 0 2 983 1215 94 0 0 chr5 52212378 52212558 -100324701 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 983 3957 194 57 33 chr5 52212558 52212580 -100324679 + Lx9 LINE L1 7343 7353 -291 2 983 729 88 0 0 chr5 52212580 52212682 -100324577 + (GA)n Simple_repeat Simple_repeat 1 102 0 2 983 3957 194 57 33 chr5 52212682 52212791 -100324468 + Lx9 LINE L1 7354 7451 -193 2 983 1908 291 47 23 chr5 52212797 52213279 -100323980 + Lx5 LINE L1 6460 6951 -99 2 983 459 52 0 0 chr5 52213279 52213337 -100323922 + (GGA)n Simple_repeat Simple_repeat 1 58 0 2 983 1908 291 47 23 chr5 52213337 52213410 -100323849 + Lx5 LINE L1 6952 7028 -22 2 983 258 331 157 5 chr5 52213938 52214129 -100323130 + L2a LINE L2 3207 3426 0 2 983 367 271 83 0 chr5 52214558 52214691 -100322568 + MER104 DNA Tc2 38 181 0 2 983 302 356 87 0 chr5 52214708 52214916 -100322343 - MIRb SINE MIR -15 253 28 2 983 312 316 50 96 chr5 52216185 52216706 -100320553 + CR1_Mam LINE CR1 1097 1593 -611 2 983 192 152 0 0 chr5 52217306 52217339 -100319920 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 983 847 277 12 16 chr5 52217411 52217653 -100319606 - B4 SINE B4 -50 242 2 2 983 936 145 210 0 chr5 52217913 52218099 -100319160 - URR1A DNA MER1_type -1 225 1 2 983 244 401 24 24 chr5 52218502 52218668 -100318591 + MIRb SINE MIR 24 189 -79 2 983 252 321 43 77 chr5 52218913 52219056 -100318203 + MIRb SINE MIR 22 166 -102 2 983 1048 248 89 69 chr5 52219056 52219403 -100317856 + ORR1E LTR MaLR 4 357 -2 2 983 252 321 43 77 chr5 52219403 52219468 -100317791 + MIRb SINE MIR 167 223 -45 2 983 22 0 0 0 chr5 52219695 52219717 -100317542 + AT_rich Low_complexity Low_complexity 1 22 0 2 983 423 0 0 0 chr5 52223068 52223115 -100314144 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 2 983 936 196 10 26 chr5 52224234 52224428 -100312831 - URR1A DNA MER1_type 0 226 36 2 983 1975 168 69 44 chr5 52224998 52225404 -100311855 + MTC LTR MaLR 6 421 0 2 983 801 239 76 28 chr5 52226398 52226609 -100310650 - ID_B1 SINE B4 0 224 4 2 983 231 267 4 14 chr5 52230769 52230863 -100306396 - MIRm SINE MIR -102 166 77 2 983 265 281 52 9 chr5 52231137 52231252 -100306007 + MLT1H LTR MaLR 430 549 0 2 983 639 95 0 0 chr5 52231422 52231527 -100305732 + (TC)n Simple_repeat Simple_repeat 1 105 0 2 983 189 0 0 0 chr5 52231527 52231548 -100305711 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 983 232 375 0 20 chr5 52231905 52232003 -100305256 + MTE2a LTR MaLR 67 162 -217 2 983 446 0 19 0 chr5 52232059 52232113 -100305146 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 983 425 248 26 17 chr5 52232127 52232242 -100305017 + MTE2a LTR MaLR 264 379 0 2 983 519 60 0 0 chr5 52232602 52232669 -100304590 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 983 273 286 0 0 chr5 52232777 52232847 -100304412 - ID4 SINE ID -12 71 2 2 983 289 299 135 13 chr5 52233437 52233593 -100303666 + L3 LINE CR1 3628 3802 -687 2 983 340 312 19 31 chr5 52234208 52234367 -100302892 - MIRb SINE MIR -90 178 22 2 983 1580 261 45 5 chr5 52238717 52239141 -100298118 + Lx7 LINE L1 6879 7319 -377 2 983 458 298 86 19 chr5 52240455 52240671 -100296588 - MIRb SINE MIR -35 233 1 2 983 220 163 0 39 chr5 52240846 52240897 -100296362 + GA-rich Low_complexity Low_complexity 3 51 0 2 983 420 176 0 0 chr5 52242756 52242858 -100294401 + (TG)n Simple_repeat Simple_repeat 2 103 0 3 983 845 257 129 28 chr5 52242880 52243128 -100294131 - B4 SINE B4 -18 274 2 3 983 882 54 0 0 chr5 52243678 52243790 -100293469 + (CATATA)n Simple_repeat Simple_repeat 1 112 0 3 983 492 252 64 52 chr5 52243851 52244023 -100293236 + MIRb SINE MIR 28 201 -67 3 983 183 100 0 0 chr5 52245350 52245380 -100291879 + (AGGGGG)n Simple_repeat Simple_repeat 3 32 0 3 983 1303 80 95 43 chr5 52246442 52246652 -100290607 - L1Md_F2 LINE L1 -1 6581 6361 3 983 2284 34 0 0 chr5 52246652 52246914 -100290345 + L1Md_F2 LINE L1 6024 6285 -297 3 983 1193 176 36 9 chr5 52247798 52248021 -100289238 - ORR1C2 LTR MaLR -2 382 154 3 983 336 64 0 0 chr5 52248023 52248070 -100289189 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 3 983 772 163 15 0 chr5 52248071 52248206 -100289053 - B1_Mus2 SINE Alu -2 145 9 3 983 513 195 66 126 chr5 52248203 52248385 -100288874 - ORR1C2 LTR MaLR -211 173 3 3 983 226 319 61 17 chr5 52248428 52248543 -100288716 + L1M5 LINE L1 5566 5685 -555 3 983 28 29 0 0 chr5 52248820 52248855 -100288404 + AT_rich Low_complexity Low_complexity 1 35 0 3 983 751 199 93 39 chr5 52249520 52249724 -100287535 + B3 SINE B2 2 216 0 3 983 274 331 32 43 chr5 52250273 52250459 -100286800 - L1M5 LINE L1 -236 5888 5705 3 983 265 228 0 60 chr5 52251475 52251559 -100285700 + A-rich Low_complexity Low_complexity 5 83 0 3 983 21 0 0 0 chr5 52251988 52252009 -100285250 + AT_rich Low_complexity Low_complexity 1 21 0 3 983 487 333 103 0 chr5 52253415 52253628 -100283631 + B4 SINE B4 57 291 -1 3 983 754 308 46 11 chr5 52253738 52254001 -100283258 + Lx8 LINE L1 7202 7473 0 3 983 1871 231 70 32 chr5 52254214 52254850 -100282409 + Lx9 LINE L1 6955 7642 -2 3 983 594 293 32 0 chr5 52255112 52255269 -100281990 + ID_B1 SINE B4 35 196 -28 3 983 297 0 0 0 chr5 52255269 52255302 -100281957 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 3 983 318 169 17 0 chr5 52255385 52255444 -100281815 + PB1D9 SINE Alu 3 62 -58 3 983 204 0 54 27 chr5 52255459 52255496 -100281763 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 983 510 282 69 74 chr5 52257650 52257743 -100279516 + MER20 DNA MER1_type 1 80 -139 3 983 579 29 0 0 chr5 52257743 52257812 -100279447 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 983 510 282 69 74 chr5 52257812 52257921 -100279338 + MER20 DNA MER1_type 81 201 -18 3 983 778 294 36 125 chr5 52258020 52258436 -100278823 - MTEa LTR MaLR 0 379 1 3 983 481 288 123 0 chr5 52260394 52260540 -100276719 - ID_B1 SINE B4 -60 164 1 3 983 740 293 67 44 chr5 52260540 52260764 -100276495 - B4A SINE B4 -62 230 2 3 983 322 261 25 25 chr5 52261178 52261296 -100275963 + MIR SINE MIR 88 205 -57 3 983 361 347 58 0 chr5 52261766 52261939 -100275320 + MIRb SINE MIR 34 216 -52 3 983 207 328 0 0 chr5 52262696 52262763 -100274496 + (TATG)n Simple_repeat Simple_repeat 1 67 0 3 983 333 0 0 0 chr5 52263343 52263380 -100273879 + (A)n Simple_repeat Simple_repeat 1 37 0 3 983 288 303 0 99 chr5 52264475 52264536 -100272723 - PB1D10 SINE Alu -8 109 53 3 983 979 36 0 136 chr5 52264536 52264698 -100272561 - L1_Mus2 LINE L1 0 6566 6427 3 983 288 303 0 99 chr5 52264698 52264757 -100272502 - PB1D10 SINE Alu -65 52 1 3 983 405 0 0 0 chr5 52264847 52264892 -100272367 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 983 1067 268 7 33 chr5 52264903 52265173 -100272086 - B4 SINE B4 -29 263 1 3 983 780 11 0 0 chr5 52265324 52265413 -100271846 + (TC)n Simple_repeat Simple_repeat 2 90 0 3 983 183 80 0 0 chr5 52265873 52265898 -100271361 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 983 241 47 23 23 chr5 52266618 52266662 -100270597 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 983 303 287 23 11 chr5 52269361 52269449 -100267810 - MIRm SINE MIR -172 104 16 3 983 314 354 7 37 chr5 52270114 52270249 -100267010 + MIR SINE MIR 109 239 -23 3 983 219 69 0 0 chr5 52270577 52270606 -100266653 + (A)n Simple_repeat Simple_repeat 1 29 0 3 983 215 234 0 0 chr5 52271860 52271907 -100265352 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 3 983 346 336 150 47 chr5 52271907 52272811 -100264448 - L2a LINE L2 0 3426 2444 3 983 238 315 43 3 chr5 52273876 52274000 -100263259 + MIRc SINE MIR 24 150 -118 3 983 282 256 26 0 chr5 52274097 52274175 -100263084 - LTR33A LTR ERVL -20 500 421 3 983 299 287 114 28 chr5 52274536 52274693 -100262566 + MLT1A0 LTR MaLR 181 366 -8 3 983 548 81 11 0 chr5 52275049 52275136 -100262123 + (TTGG)n Simple_repeat Simple_repeat 2 89 0 3 983 322 308 25 17 chr5 52275139 52275258 -100262001 - PB1D9 SINE Alu 0 120 1 3 983 208 381 66 15 chr5 52275419 52275555 -100261704 - MER5B DNA MER1_type -4 174 32 3 983 1544 100 13 0 chr5 52276780 52277009 -100260250 + Lx LINE L1 6419 6650 -4 3 983 204 77 103 0 chr5 52277610 52277649 -100259610 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 983 508 312 0 20 chr5 52278543 52278690 -100258569 + ID_B1 SINE B4 80 223 -1 3 983 401 295 0 48 chr5 52279176 52279192 -100258067 + ID_B1 SINE B4 86 223 0 3 983 489 238 23 23 chr5 52279192 52279321 -100257938 + B1F SINE Alu 21 149 0 3 983 321 26 0 0 chr5 52279485 52279523 -100257736 + (CATA)n Simple_repeat Simple_repeat 2 39 0 3 983 258 81 0 0 chr5 52279523 52279559 -100257700 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 983 858 250 23 9 chr5 52280638 52280856 -100256403 - ID_B1 SINE B4 -2 222 2 3 983 189 0 0 0 chr5 52281563 52281584 -100255675 + (A)n Simple_repeat Simple_repeat 1 21 0 3 983 243 0 0 0 chr5 52282135 52282162 -100255097 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 983 305 296 58 41 chr5 52284035 52284192 -100253067 + MIRb SINE MIR 33 198 -70 3 983 298 263 59 8 chr5 52284364 52284483 -100252776 - B4A SINE B4 -44 248 124 3 983 519 338 0 0 chr5 52284508 52284653 -100252606 - B4A SINE B4 -147 145 1 3 983 381 22 0 0 chr5 52286803 52286849 -100250410 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 983 1290 101 34 0 chr5 52288258 52288436 -100248823 + B2_Mm2 SINE B2 1 184 -11 3 983 624 27 0 0 chr5 52288436 52288510 -100248749 + (GA)n Simple_repeat Simple_repeat 2 75 0 3 983 260 342 0 0 chr5 52289821 52289900 -100247359 + MER20 DNA MER1_type 10 88 -131 3 983 462 280 184 5 chr5 52290110 52290300 -100246959 + B4 SINE B4 57 280 -12 3 983 683 97 9 0 chr5 52290305 52290419 -100246840 + (TC)n Simple_repeat Simple_repeat 2 116 0 3 983 534 57 0 0 chr5 52290419 52290489 -100246770 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 983 258 253 0 35 chr5 52290636 52290722 -100246537 + A-rich Low_complexity Low_complexity 1 83 0 3 983 216 0 0 0 chr5 52291383 52291407 -100245852 + (A)n Simple_repeat Simple_repeat 1 24 0 3 983 523 300 17 26 chr5 52292177 52292430 -100244829 + L1MA4 LINE L1 5675 5930 -254 3 983 198 0 0 0 chr5 52292719 52292741 -100244518 + (CTAA)n Simple_repeat Simple_repeat 3 24 0 3 983 336 268 29 0 chr5 52294614 52294719 -100242540 + MIR SINE MIR 61 174 -94 3 983 518 173 8 0 chr5 52295993 52296126 -100241133 + (TG)n Simple_repeat Simple_repeat 2 135 0 3 983 423 0 0 0 chr5 52296127 52296174 -100241085 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 983 21 0 0 0 chr5 52297064 52297085 -100240174 + AT_rich Low_complexity Low_complexity 1 21 0 3 983 199 224 86 0 chr5 52297196 52297254 -100240005 + MIRc SINE MIR 66 128 -140 3 983 271 244 26 0 chr5 52297593 52297671 -100239588 - MIRb SINE MIR -170 98 19 3 984 263 281 3 0 chr5 52298033 52298114 -100239145 + MER5B DNA MER1_type 39 131 -58 3 984 180 0 0 0 chr5 52298338 52298358 -100238901 + (T)n Simple_repeat Simple_repeat 1 20 0 3 984 198 0 0 0 chr5 52302083 52302105 -100235154 + (A)n Simple_repeat Simple_repeat 1 22 0 3 984 216 0 0 0 chr5 52303427 52303451 -100233808 + (TCTCC)n Simple_repeat Simple_repeat 1 24 0 3 984 298 269 32 11 chr5 52303972 52304066 -100233193 - MIRc SINE MIR -51 217 122 3 984 1118 268 20 38 chr5 52306709 52307054 -100230205 + Lx8 LINE L1 6923 7261 -212 3 984 540 318 90 48 chr5 52307056 52307425 -100229834 - MTD LTR MaLR 0 419 10 3 984 543 251 113 41 chr5 52307432 52307627 -100229632 + Lx8 LINE L1 7258 7466 -7 3 984 843 303 19 5 chr5 52307657 52307869 -100229390 + B3 SINE B2 1 215 -1 3 984 263 26 51 0 chr5 52307935 52307974 -100229285 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 3 984 878 163 17 0 chr5 52307978 52308150 -100229109 + GA-rich Low_complexity Low_complexity 3 177 0 3 984 23 0 0 0 chr5 52308551 52308574 -100228685 + AT_rich Low_complexity Low_complexity 1 23 0 3 984 224 324 0 0 chr5 52308666 52308740 -100228519 + CT-rich Low_complexity Low_complexity 3 76 0 3 984 216 0 0 0 chr5 52308832 52308856 -100228403 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 984 945 309 3 24 chr5 52308863 52309155 -100228104 - B4 SINE B4 -6 286 1 3 984 180 0 0 0 chr5 52310030 52310050 -100227209 + (TGGGGG)n Simple_repeat Simple_repeat 3 22 0 3 984 459 0 0 0 chr5 52310676 52310727 -100226532 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 3 984 407 19 19 0 chr5 52310805 52310857 -100226402 + (CATA)n Simple_repeat Simple_repeat 2 54 0 3 984 534 272 130 25 chr5 52310862 52311062 -100226197 + MER2 DNA MER2_type 9 229 -116 3 984 457 282 0 0 chr5 52311449 52311559 -100225700 + PB1D7 SINE Alu 2 111 -9 3 984 1869 180 6 139 chr5 52311601 52312110 -100225149 + BGLII_B LTR ERVK 1 441 0 3 984 205 132 36 36 chr5 52312730 52312785 -100224474 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 3 984 207 310 0 48 chr5 52312980 52313085 -100224174 + GA-rich Low_complexity Low_complexity 4 103 0 3 984 324 258 203 24 chr5 52313731 52313804 -100223455 + B4 SINE B4 1 86 -206 4 984 306 0 0 0 chr5 52313804 52313838 -100223421 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4 984 324 258 203 24 chr5 52313838 52313887 -100223372 + B4 SINE B4 87 145 -147 4 984 459 284 11 69 chr5 52314030 52314219 -100223040 + GA-rich Low_complexity Low_complexity 3 180 0 4 984 516 81 0 0 chr5 52314417 52314491 -100222768 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 984 622 266 20 54 chr5 52315889 52316092 -100221167 - B3A SINE B2 0 198 3 4 984 613 262 143 11 chr5 52317380 52317569 -100219690 - B3 SINE B2 -2 214 1 4 984 537 305 76 53 chr5 52317809 52318110 -100219149 + MLT2B4 LTR ERVL 8 315 -241 4 984 269 320 31 16 chr5 52319441 52319568 -100217691 + MIR SINE MIR 20 148 -114 4 984 573 238 81 7 chr5 52319568 52319716 -100217543 + RSINE1 SINE B4 2 160 -5 4 984 603 0 0 0 chr5 52320334 52320401 -100216858 + (GGAA)n Simple_repeat Simple_repeat 1 67 0 4 984 185 298 0 0 chr5 52321340 52321397 -100215862 - MIR3 SINE MIR -36 172 116 4 984 678 299 122 0 chr5 52321785 52322056 -100215203 - MER58B DNA MER1_type 0 341 38 4 984 267 236 36 0 chr5 52322115 52322170 -100215089 + PB1D10 SINE Alu 29 85 -32 4 984 657 58 0 0 chr5 52322175 52322261 -100214998 + (GGGA)n Simple_repeat Simple_repeat 1 86 0 4 984 208 298 125 0 chr5 52324803 52324907 -100212352 + MIRb SINE MIR 83 199 -69 4 984 252 0 0 0 chr5 52325063 52325091 -100212168 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 4 984 181 308 0 0 chr5 52325095 52325147 -100212112 - L2a LINE L2 -17 3409 3358 4 984 239 222 0 0 chr5 52327705 52327750 -100209509 - MIRb SINE MIR -6 262 218 4 984 519 31 0 0 chr5 52327962 52328027 -100209232 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 984 2797 48 34 3 chr5 52328148 52328500 -100208759 - L1_Mus1 LINE L1 0 6567 6205 4 984 524 269 84 61 chr5 52328502 52328716 -100208543 - B4A SINE B4 -73 219 1 4 984 283 301 110 0 chr5 52328902 52329038 -100208221 - MIR SINE MIR -87 175 25 4 984 2451 80 3 66 chr5 52329211 52329560 -100207699 + ORR1A2 LTR MaLR 1 327 0 4 984 486 236 54 43 chr5 52330779 52330965 -100206294 + MIR SINE MIR 73 260 -2 4 984 293 329 34 41 chr5 52330968 52331114 -100206145 - MIR SINE MIR -110 152 8 4 984 433 328 0 0 chr5 52331552 52331668 -100205591 + PB1 SINE Alu 1 116 -11 4 984 328 292 2 0 chr5 52332120 52332224 -100205035 - MIRb SINE MIR -124 144 34 4 984 1136 307 44 55 chr5 52332664 52333283 -100203976 + Lx9 LINE L1 6827 7471 -2 4 984 3305 58 0 2 chr5 52333306 52333703 -100203556 + MTA_Mm LTR MaLR 1 396 0 4 984 416 295 71 88 chr5 52334421 52334799 -100202460 - MLT1F2 LTR MaLR 0 560 115 4 984 243 146 0 0 chr5 52335331 52335372 -100201887 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 984 405 0 0 0 chr5 52335720 52335765 -100201494 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 984 297 0 0 0 chr5 52335765 52335797 -100201462 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 984 224 315 90 0 chr5 52337395 52337484 -100199775 + L2a LINE L2 3307 3403 -23 4 984 311 331 97 0 chr5 52338012 52338136 -100199123 + B1_Mur2 SINE Alu 10 145 -4 4 984 252 0 0 0 chr5 52338192 52338220 -100199039 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 984 410 311 15 8 chr5 52338349 52338482 -100198777 + B4A SINE B4 1 134 -158 4 984 260 312 17 51 chr5 52338721 52338839 -100198420 - MIRb SINE MIR -128 140 27 4 984 1166 102 0 6 chr5 52340270 52340447 -100196812 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 4 984 26 30 0 0 chr5 52341142 52341175 -100196084 + AT_rich Low_complexity Low_complexity 1 33 0 4 984 330 26 0 0 chr5 52341585 52341624 -100195635 + (TTG)n Simple_repeat Simple_repeat 3 41 0 4 984 207 322 11 11 chr5 52342999 52343090 -100194169 + GA-rich Low_complexity Low_complexity 4 94 0 4 984 501 283 65 14 chr5 52343148 52343359 -100193900 + MIR SINE MIR 45 258 -4 4 984 318 26 0 0 chr5 52343381 52343420 -100193839 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 984 334 252 90 22 chr5 52345520 52345654 -100191605 + MLT1J LTR MaLR 38 180 -332 4 984 957 323 10 40 chr5 52345930 52346026 -100191233 + B4A SINE B4 1 95 -197 4 984 1713 26 0 0 chr5 52346026 52346219 -100191040 + B2_Mm1a SINE B2 1 193 0 4 984 957 323 10 40 chr5 52346219 52346422 -100190837 + B4A SINE B4 96 291 -1 4 984 258 223 9 19 chr5 52346571 52346676 -100190583 + (TTTG)n Simple_repeat Simple_repeat 2 105 0 4 984 224 323 81 44 chr5 52346877 52347013 -100190246 - MIRb SINE MIR -93 175 35 4 984 293 307 20 0 chr5 52349781 52349882 -100187377 - MIR SINE MIR -145 117 15 4 984 396 0 0 0 chr5 52350075 52350119 -100187140 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 984 197 342 71 9 chr5 52350213 52350325 -100186934 - L2b LINE L2 -3 3372 3254 4 984 1127 89 0 8 chr5 52350400 52350651 -100186608 + (TG)n Simple_repeat Simple_repeat 1 248 0 4 984 251 175 18 0 chr5 52350671 52350728 -100186531 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 984 1037 105 6 0 chr5 52350785 52350947 -100186312 + (GA)n Simple_repeat Simple_repeat 1 163 0 4 984 394 311 98 64 chr5 52352595 52352936 -100184323 + ORR1E LTR MaLR 6 379 0 4 984 255 325 93 24 chr5 52354110 52354315 -100182944 - L2a LINE L2 -2 3424 3206 4 984 925 209 18 64 chr5 52354810 52355030 -100182229 - B3 SINE B2 -6 210 1 4 984 240 333 0 0 chr5 52355122 52355182 -100182077 + ID SINE ID 1 60 -164 4 984 221 268 36 0 chr5 52355319 52355375 -100181884 - L2a LINE L2 -964 2455 2398 4 984 1411 91 0 5 chr5 52355442 52355630 -100181629 + B2_Mm2 SINE B2 1 187 -8 4 984 21210 146 27 22 chr5 52355639 52360573 -100176686 + Lx5 LINE L1 2084 7050 0 4 984 23 33 0 0 chr5 52360582 52360612 -100176647 + AT_rich Low_complexity Low_complexity 1 30 0 4 984 622 230 20 7 chr5 52360696 52360845 -100176414 + L1MEb LINE L1 52 202 -5868 4 984 308 288 123 28 chr5 52360897 52361108 -100176151 + L1MEb LINE L1 396 626 -5444 4 984 934 163 0 7 chr5 52361168 52361316 -100175943 + B1_Mus1 SINE Alu 1 147 -1 4 984 2282 110 3 58 chr5 52361624 52361972 -100175287 - ORR1A4 LTR MaLR 0 329 1 4 984 267 338 55 41 chr5 52362876 52363166 -100174093 + CR1_Mam LINE CR1 471 764 -1440 4 984 270 0 0 0 chr5 52363498 52363528 -100173731 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 984 229 333 120 0 chr5 52363773 52363890 -100173369 + L1M5 LINE L1 5584 5714 -526 4 984 740 213 152 5 chr5 52364097 52364281 -100172978 - B3 SINE B2 -5 211 1 4 984 599 304 21 27 chr5 52364402 52364588 -100172671 - B3A SINE B2 -12 186 2 4 984 233 271 78 70 chr5 52364681 52364796 -100172463 + MLT1A0 LTR MaLR 1 116 -249 4 984 5796 148 34 40 chr5 52364817 52365931 -100171328 + L1Md_T LINE L1 99 1205 -5411 4 984 37150 31 0 0 chr5 52365937 52370355 -100166904 + L1Md_T LINE L1 1170 5586 -297 4 984 8185 55 0 0 chr5 52370355 52371351 -100165908 + L1Md_T LINE L1 5587 6582 0 4 984 453 327 49 0 chr5 52371439 52371601 -100165658 + MLT1A0 LTR MaLR 159 328 -37 4 984 323 288 168 66 chr5 52371714 52371911 -100165348 + MER20 DNA MER1_type 2 218 -1 4 984 231 188 0 0 chr5 52372511 52372559 -100164700 + (CTG)n Simple_repeat Simple_repeat 1 48 0 4 984 1040 262 147 32 chr5 52372620 52373082 -100164177 + Lx8 LINE L1 6959 7473 0 4 984 824 287 125 10 chr5 52373117 52373420 -100163839 - MTEa LTR MaLR -1 378 41 4 984 1586 249 104 38 chr5 52373705 52374205 -100163054 - Lx8 LINE L1 -2 7471 6939 4 984 239 333 0 0 chr5 52374423 52374501 -100162758 - MIRb SINE MIR -77 191 114 4 984 326 275 0 24 chr5 52374506 52374588 -100162671 + ID4 SINE ID 2 81 -2 4 984 7730 73 5 5 chr5 52374624 52375633 -100161626 + L1_Mus4 LINE L1 5625 6633 -3 4 984 261 228 133 39 chr5 52375807 52375935 -100161324 + ORR1E LTR MaLR 115 254 -105 4 984 273 247 0 0 chr5 52376414 52376487 -100160772 + (CCCCAG)n Simple_repeat Simple_repeat 6 78 0 4 984 308 319 53 57 chr5 52376614 52376913 -100160346 + CR1_Mam LINE CR1 1213 1510 -694 4 984 339 303 58 62 chr5 52377132 52377295 -100159964 + Lx9 LINE L1 7324 7493 -151 4 984 582 15 0 0 chr5 52377295 52377362 -100159897 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 984 411 21 0 0 chr5 52377362 52377409 -100159850 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 984 339 303 58 62 chr5 52377409 52377504 -100159755 + Lx9 LINE L1 7494 7581 -63 4 984 234 0 0 0 chr5 52377645 52377671 -100159588 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 984 1012 226 14 5 chr5 52379502 52379715 -100157544 + B3 SINE B2 2 216 0 4 984 333 0 0 0 chr5 52379727 52379764 -100157495 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 984 785 114 15 0 chr5 52381963 52382094 -100155165 + (TTTTC)n Simple_repeat Simple_repeat 2 134 0 4 984 213 39 0 0 chr5 52383408 52383434 -100153825 + (T)n Simple_repeat Simple_repeat 1 26 0 4 984 240 307 27 0 chr5 52384151 52384226 -100153033 + MLT1G3 LTR MaLR 73 149 -446 4 984 402 277 20 0 chr5 52384307 52384408 -100152851 - B4A SINE B4 -90 202 100 4 984 300 114 37 25 chr5 52385391 52385472 -100151787 + (CAGAGA)n Simple_repeat Simple_repeat 3 84 0 4 984 238 333 11 0 chr5 52385530 52385620 -100151639 - MER5A DNA MER1_type -95 94 4 4 984 250 283 69 20 chr5 52385637 52385738 -100151521 - MIR SINE MIR -62 200 95 4 984 889 156 0 0 chr5 52385854 52385989 -100151270 + B1_Mus1 SINE Alu 1 135 -13 4 984 1218 71 6 12 chr5 52385989 52386161 -100151098 - L1Md_F2 LINE L1 -12 6570 6400 4 984 189 0 0 0 chr5 52386170 52386191 -100151068 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 4 984 21 0 0 0 chr5 52386438 52386459 -100150800 + AT_rich Low_complexity Low_complexity 1 21 0 4 984 360 0 0 0 chr5 52386508 52386548 -100150711 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 984 943 237 51 125 chr5 52386572 52386885 -100150374 - B4 SINE B4 0 292 3 5 984 233 299 0 38 chr5 52387938 52388018 -100149241 + CT-rich Low_complexity Low_complexity 5 81 0 5 984 435 279 167 25 chr5 52389969 52390292 -100146967 - L1MB4 LINE L1 -5 6175 5807 5 984 465 350 0 24 chr5 52390518 52390682 -100146577 + RSINE1 SINE B4 2 161 -4 5 984 416 200 63 0 chr5 52392746 52392841 -100144418 - ID_B1 SINE B4 -1 223 123 5 984 3774 72 0 33 chr5 52392843 52393411 -100143848 - L1Md_F2 LINE L1 0 6582 6080 5 984 387 0 0 0 chr5 52393429 52393472 -100143787 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 984 222 37 0 0 chr5 52393879 52393906 -100143353 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 5 984 1384 158 14 0 chr5 52394001 52394223 -100143036 - URR1B DNA MER1_type 0 225 1 5 984 391 274 280 10 chr5 52395147 52395432 -100141827 + MLT1A0 LTR MaLR 1 362 -3 5 984 287 282 83 36 chr5 52396223 52396372 -100140887 - L1MA4A LINE L1 -392 5911 5751 5 984 1355 304 33 21 chr5 52396435 52396952 -100140307 + L1M2 LINE L1 4796 5318 -825 5 984 2991 174 117 24 chr5 52396969 52397594 -100139665 + RMER1B Other Other 379 1061 -5 5 984 1191 277 67 36 chr5 52397587 52398143 -100139116 + L1_Mur3 LINE L1 5281 5831 -16 5 984 1064 152 178 0 chr5 52398891 52399082 -100138177 - URR1A DNA MER1_type 0 226 2 5 984 240 200 0 0 chr5 52399209 52399274 -100137985 + CT-rich Low_complexity Low_complexity 2 66 0 5 984 195 170 0 0 chr5 52399284 52399331 -100137928 + (TCTCTG)n Simple_repeat Simple_repeat 4 50 0 5 984 480 18 0 0 chr5 52399343 52399400 -100137859 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 984 371 260 0 0 chr5 52399420 52399497 -100137762 - B4 SINE B4 0 292 216 5 984 675 242 103 26 chr5 52399558 52399753 -100137506 - B3 SINE B2 -6 210 1 5 984 388 312 182 0 chr5 52399754 52399924 -100137335 - B4A SINE B4 -63 229 29 5 984 308 24 24 0 chr5 52400553 52400594 -100136665 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 5 984 211 255 106 0 chr5 52400607 52400654 -100136605 - PB1D7 SINE Alu -68 52 1 5 984 312 332 95 9 chr5 52401088 52401319 -100135940 - MLT1D LTR MaLR -6 499 249 5 984 243 0 0 0 chr5 52401356 52401383 -100135876 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 984 224 59 29 0 chr5 52402117 52402151 -100135108 + (GAAA)n Simple_repeat Simple_repeat 3 37 0 5 984 231 283 141 8 chr5 52402287 52402415 -100134844 + B4A SINE B4 2 146 -146 5 984 22 0 0 0 chr5 52402581 52402603 -100134656 + AT_rich Low_complexity Low_complexity 1 22 0 5 984 886 238 17 34 chr5 52403308 52403543 -100133716 + B4 SINE B4 13 243 -49 5 984 432 0 0 0 chr5 52403561 52403609 -100133650 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 984 270 73 0 0 chr5 52404401 52404442 -100132817 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 984 1484 224 62 14 chr5 52404522 52404879 -100132380 + ORR1D1 LTR MaLR 1 374 0 5 984 234 0 0 0 chr5 52406723 52406749 -100130510 + (A)n Simple_repeat Simple_repeat 1 26 0 5 984 1122 270 36 20 chr5 52407600 52407990 -100129269 + L1MA4A LINE L1 5535 5930 -373 5 984 212 98 48 32 chr5 52408018 52408081 -100129178 + (TTATA)n Simple_repeat Simple_repeat 1 64 0 5 984 195 129 0 0 chr5 52408081 52408112 -100129147 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 984 261 0 0 0 chr5 52408114 52408143 -100129116 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 984 233 287 0 141 chr5 52408555 52408697 -100128562 - PB1 SINE Alu -2 125 4 5 984 4407 138 51 93 chr5 52408746 52409288 -100127971 + Lx4A LINE L1 6235 6806 -252 5 984 549 0 0 0 chr5 52409288 52409349 -100127910 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 984 4407 138 51 93 chr5 52409349 52409666 -100127593 + Lx4A LINE L1 6807 7058 0 5 984 432 135 0 0 chr5 52409786 52409860 -100127399 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 984 378 0 0 0 chr5 52414860 52414902 -100122357 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 984 1517 68 48 10 chr5 52414918 52415127 -100122132 - L1Md_F2 LINE L1 -12 6570 6354 5 984 3435 154 14 22 chr5 52415542 52416133 -100121126 + Lx LINE L1 6069 6654 0 5 984 297 306 119 79 chr5 52416153 52416405 -100120854 + B4A SINE B4 27 288 -4 5 984 522 122 0 32 chr5 52416471 52416564 -100120695 + B1_Mur3 SINE Alu 59 148 -1 5 984 299 303 20 0 chr5 52416582 52416681 -100120578 + MIRb SINE MIR 92 192 -76 5 984 692 127 17 0 chr5 52417339 52417457 -100119802 + (CATATA)n Simple_repeat Simple_repeat 4 123 0 5 984 436 227 118 0 chr5 52418009 52418128 -100119131 + RSINE1 SINE B4 11 143 -22 5 984 369 43 0 0 chr5 52418134 52418181 -100119078 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 984 1850 35 8 21 chr5 52418193 52418430 -100118829 + L1Md_F3 LINE L1 6350 6583 -1 5 984 651 255 106 5 chr5 52418945 52419162 -100118097 - Helitron2Na_Mam RC Helitron? -8 316 78 5 984 263 340 0 87 chr5 52420230 52420333 -100116926 - MTEa LTR MaLR -281 98 5 5 984 285 220 0 0 chr5 52422019 52422078 -100115181 + RSINE1 SINE B4 5 63 -102 5 984 784 159 57 19 chr5 52422275 52422464 -100114795 + B3 SINE B2 1 187 -8 5 984 509 284 175 21 chr5 52422674 52422908 -100114351 - B4A SINE B4 -22 270 1 5 984 313 248 65 72 chr5 52423884 52424023 -100113236 + L1M5 LINE L1 5694 5831 -293 5 984 245 242 15 29 chr5 52424100 52424168 -100113091 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 5 984 474 331 88 12 chr5 52424110 52424281 -100112978 + ID_B1 SINE B4 19 202 -22 5 984 246 333 25 25 chr5 52424314 52424394 -100112865 - ID2 SINE ID -2 81 2 5 984 400 236 47 9 chr5 52424407 52424514 -100112745 - PB1 SINE Alu -4 123 13 5 984 258 167 0 0 chr5 52425352 52425412 -100111847 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 984 380 338 59 15 chr5 52427231 52427435 -100109824 + MIR SINE MIR 50 262 0 5 984 893 128 0 35 chr5 52428410 52428555 -100108704 - B1_Mm SINE Alu -7 140 1 5 985 236 180 0 0 chr5 52428860 52428910 -100108349 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 5 985 542 244 30 30 chr5 52429298 52429433 -100107826 - B3 SINE B2 -3 213 79 5 985 411 21 0 0 chr5 52429496 52429544 -100107715 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 985 466 276 22 15 chr5 52429635 52429771 -100107488 - B3A SINE B2 -54 144 8 5 985 2036 238 50 4 chr5 52429944 52430426 -100106833 + Lx2B LINE L1 6493 6996 -4 5 985 381 290 71 115 chr5 52430460 52430756 -100106503 + B4A SINE B4 10 292 0 5 985 522 0 0 0 chr5 52432464 52432522 -100104737 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 985 517 278 110 46 chr5 52433328 52433708 -100103551 + L1MA4A LINE L1 5621 6012 -285 5 985 783 215 11 11 chr5 52434059 52434233 -100103026 - MER104 DNA Tc2 -5 176 3 5 985 249 344 31 0 chr5 52434402 52434498 -100102761 + MIRc SINE MIR 39 137 -131 5 985 877 279 73 17 chr5 52435362 52435658 -100101601 + Lx8 LINE L1 6888 7220 -253 5 985 279 214 0 0 chr5 52436275 52436345 -100100914 + CT-rich Low_complexity Low_complexity 3 72 0 5 985 556 219 179 7 chr5 52438094 52438276 -100098983 + B3A SINE B2 4 215 -1 5 985 193 364 45 0 chr5 52438799 52438887 -100098372 - MIR SINE MIR -68 140 49 5 985 246 95 0 0 chr5 52440378 52440420 -100096839 + (TTG)n Simple_repeat Simple_repeat 2 43 0 5 985 1194 56 0 0 chr5 52440420 52440564 -100096695 - B1_Mus2 SINE Alu -2 145 2 5 985 193 421 0 0 chr5 52441072 52441167 -100096092 + MIRc SINE MIR 112 206 -62 5 985 304 155 28 0 chr5 52441430 52441501 -100095758 + GA-rich Low_complexity Low_complexity 1 73 0 5 985 182 139 0 44 chr5 52441943 52441988 -100095271 + CT-rich Low_complexity Low_complexity 1 43 0 5 985 788 148 290 0 chr5 52442194 52442356 -100094903 - B3 SINE B2 -7 209 1 5 985 336 296 8 46 chr5 52443811 52443942 -100093317 + MIRb SINE MIR 119 244 -24 5 985 305 320 126 18 chr5 52444187 52444410 -100092849 + L1MC5 LINE L1 7312 7558 -403 5 985 269 302 152 48 chr5 52444491 52444741 -100092518 + MLT1H1 LTR MaLR 27 302 -253 5 985 902 252 117 8 chr5 52446224 52446480 -100090779 - B4A SINE B4 -8 284 1 5 985 563 266 0 0 chr5 52447063 52447187 -100090072 + ID_B1 SINE B4 93 216 -8 5 985 839 125 23 3 chr5 52447468 52447623 -100089636 - Lx4B LINE L1 -1006 5994 5839 5 985 772 221 63 90 chr5 52447629 52447897 -100089362 + Lx2B LINE L1 6734 6994 -6 5 985 907 232 0 47 chr5 52448171 52448384 -100088875 - B3 SINE B2 -9 207 5 5 985 192 77 0 0 chr5 52448389 52448415 -100088844 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 5 985 780 187 0 0 chr5 52448419 52448553 -100088706 - B1_Mur3 SINE Alu -1 148 15 5 985 1421 299 40 30 chr5 52448685 52449216 -100088043 - L1MC2 LINE L1 -287 6057 5522 5 985 561 239 0 17 chr5 52449298 52449417 -100087842 - B1F SINE Alu -1 148 32 5 985 477 121 0 0 chr5 52449591 52449674 -100087585 + (TG)n Simple_repeat Simple_repeat 1 83 0 5 985 243 0 0 0 chr5 52449674 52449700 -100087559 + (GA)n Simple_repeat Simple_repeat 1 27 0 5 985 833 289 70 4 chr5 52449704 52449961 -100087298 - B4 SINE B4 -18 274 1 5 985 577 263 42 16 chr5 52449971 52450164 -100087095 + MER58B DNA MER1_type 97 294 -47 5 985 315 0 0 0 chr5 52450990 52451025 -100086234 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 985 416 285 73 0 chr5 52451085 52451208 -100086051 - RSINE1 SINE B4 -24 141 10 6 985 219 220 32 48 chr5 52451846 52451908 -100085351 + MER5B DNA MER1_type 1 61 -117 6 985 968 138 7 0 chr5 52451916 52452054 -100085205 + B1_Mur4 SINE Alu 5 143 -7 6 985 189 107 0 0 chr5 52452054 52452082 -100085177 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 6 985 191 330 39 0 chr5 52452083 52452186 -100085073 - MER5B DNA MER1_type -49 129 23 6 985 387 0 0 0 chr5 52452334 52452377 -100084882 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 985 364 0 59 0 chr5 52452395 52452446 -100084813 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 6 985 219 254 25 53 chr5 52453176 52453273 -100083986 - L2b LINE L2 -199 3188 3091 6 985 238 289 0 38 chr5 52453366 52453445 -100083814 + BC1_Mm scRNA scRNA 7 82 -70 6 985 304 277 115 52 chr5 52454297 52454567 -100082692 + L1ME4a LINE L1 5675 5961 -163 6 985 530 308 49 37 chr5 52457613 52457859 -100079400 - MLT1A0 LTR MaLR 0 365 117 6 985 421 223 31 86 chr5 52457969 52458111 -100079148 + MER53 DNA hAT 9 142 -51 6 985 4093 84 27 31 chr5 52458111 52458697 -100078562 + MT2B2 LTR ERVL 1 584 0 6 985 421 223 31 86 chr5 52458697 52458716 -100078543 + MER53 DNA hAT 143 161 -32 6 985 213 311 0 0 chr5 52458924 52458985 -100078274 + GA-rich Low_complexity Low_complexity 2 62 0 6 985 346 328 66 36 chr5 52459229 52459425 -100077834 + MER58A DNA MER1_type 6 207 -17 6 985 22 0 0 0 chr5 52462094 52462116 -100075143 + AT_rich Low_complexity Low_complexity 1 22 0 6 985 970 138 11 0 chr5 52462638 52462812 -100074447 + (GAA)n Simple_repeat Simple_repeat 2 177 0 6 985 476 32 16 0 chr5 52462812 52462874 -100074385 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 6 985 231 36 0 0 chr5 52463170 52463198 -100074061 + (CAA)n Simple_repeat Simple_repeat 1 28 0 6 985 931 292 161 3 chr5 52464135 52464526 -100072733 + Lx8 LINE L1 7021 7473 0 6 985 1221 245 97 18 chr5 52464558 52464899 -100072360 + ORR1D2 LTR MaLR 3 370 0 6 985 264 137 0 0 chr5 52465015 52465068 -100072191 + L1MA5A LINE L1 6242 6294 -6 6 985 23 0 0 0 chr5 52465158 52465181 -100072078 + AT_rich Low_complexity Low_complexity 1 23 0 6 985 1008 250 82 33 chr5 52465650 52465968 -100071291 - ORR1D2 LTR MaLR 0 370 5 6 985 389 304 9 18 chr5 52465971 52466085 -100071174 - ID_B1 SINE B4 -17 207 95 6 985 543 337 103 19 chr5 52468154 52468417 -100068842 + B4A SINE B4 6 290 -2 6 985 294 29 0 0 chr5 52469841 52469876 -100067383 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 985 248 279 0 0 chr5 52470000 52470061 -100067198 + ID4_ SINE ID 7 67 -16 6 985 429 81 0 0 chr5 52470063 52470125 -100067134 + (GA)n Simple_repeat Simple_repeat 2 63 0 6 985 414 0 0 0 chr5 52470125 52470171 -100067088 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 985 21 36 0 0 chr5 52470561 52470589 -100066670 + AT_rich Low_complexity Low_complexity 1 28 0 6 985 340 229 8 90 chr5 52471118 52471251 -100066008 - PB1D9 SINE Alu 0 120 1 6 985 188 138 30 30 chr5 52471251 52471318 -100065941 + T-rich Low_complexity Low_complexity 2 68 0 6 985 264 30 0 0 chr5 52473638 52473671 -100063588 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 985 201 121 0 0 chr5 52473671 52473704 -100063555 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 6 985 975 302 25 7 chr5 52473972 52474252 -100063007 + B4A SINE B4 4 288 -4 6 985 907 233 0 79 chr5 52474401 52474629 -100062630 + B3 SINE B2 1 210 -6 6 985 395 266 35 9 chr5 52480352 52480466 -100056793 - B1F SINE Alu -32 117 1 6 985 502 233 10 0 chr5 52480689 52480792 -100056467 + PB1D10 SINE Alu 1 104 -13 6 985 40 37 0 0 chr5 52481965 52482019 -100055240 + AT_rich Low_complexity Low_complexity 1 54 0 6 985 382 214 116 14 chr5 52482022 52482169 -100055090 - L1M2 LINE L1 -853 5459 5298 6 985 741 179 34 73 chr5 52482378 52482583 -100054676 + B3A SINE B2 2 198 0 6 985 252 0 0 0 chr5 52482649 52482677 -100054582 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 985 1281 61 0 0 chr5 52482987 52483167 -100054092 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 985 1241 251 53 40 chr5 52484479 52484853 -100052406 - MTE2b LTR MaLR 0 379 1 6 985 247 309 151 9 chr5 52484887 52485119 -100052140 + L2 LINE L2 2702 2966 -453 6 985 709 144 14 0 chr5 52486260 52486406 -100050853 + (TG)n Simple_repeat Simple_repeat 2 149 0 6 985 1053 307 34 29 chr5 52486477 52486863 -100050396 - Lx8 LINE L1 -214 7259 6872 6 985 501 324 114 38 chr5 52488074 52488402 -100048857 + MLT2C1 LTR ERVL 1 358 -39 6 985 715 90 16 0 chr5 52488402 52488524 -100048735 + (TAGA)n Simple_repeat Simple_repeat 4 127 0 6 985 501 324 114 38 chr5 52488524 52488564 -100048695 + MLT2C1 LTR ERVL 359 397 0 6 985 459 310 127 66 chr5 52489134 52489331 -100047928 - B4 SINE B4 -11 281 73 6 985 495 336 108 0 chr5 52489471 52489712 -100047547 + MLT1B LTR MaLR 124 390 0 6 985 949 86 7 79 chr5 52489932 52490084 -100047175 + B1_Mus1 SINE Alu 2 142 -6 6 985 207 0 0 0 chr5 52490092 52490115 -100047144 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6 985 297 68 0 0 chr5 52490123 52490167 -100047092 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 6 985 575 352 78 15 chr5 52490185 52490594 -100046665 + MLT1H LTR MaLR 83 517 -32 6 985 387 0 0 0 chr5 52490625 52490668 -100046591 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 985 342 0 0 0 chr5 52490668 52490705 -100046554 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 985 300 111 0 0 chr5 52490918 52490963 -100046296 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 985 297 0 0 0 chr5 52490963 52490995 -100046264 + (GA)n Simple_repeat Simple_repeat 2 34 0 6 985 222 37 0 0 chr5 52491148 52491175 -100046084 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 985 462 227 91 0 chr5 52491181 52491291 -100045968 + PB1D9 SINE Alu 1 120 0 6 985 270 271 0 27 chr5 52491323 52491405 -100045854 + RSINE1 SINE B4 6 85 -207 6 985 279 0 0 0 chr5 52491587 52491618 -100045641 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 6 985 204 40 0 0 chr5 52491652 52491677 -100045582 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 985 1193 134 117 19 chr5 52492930 52493135 -100044124 + URR1A DNA MER1_type 2 226 0 6 985 232 265 58 25 chr5 52494252 52494372 -100042887 + L1ME4a LINE L1 5951 6074 -50 6 985 369 0 0 0 chr5 52494558 52494599 -100042660 + (GA)n Simple_repeat Simple_repeat 1 41 0 6 985 381 93 0 0 chr5 52494865 52494919 -100042340 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 985 602 214 8 23 chr5 52495070 52495199 -100042060 - B1F1 SINE Alu -5 144 18 6 985 561 268 72 56 chr5 52495272 52495521 -100041738 + Kanga2_a DNA Tc2 74 326 -562 6 985 28 0 0 0 chr5 52495739 52495767 -100041492 + AT_rich Low_complexity Low_complexity 1 28 0 6 985 387 0 0 0 chr5 52496708 52496751 -100040508 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 985 309 319 8 32 chr5 52497114 52497237 -100040022 + MIR SINE MIR 63 182 -80 6 985 942 76 0 0 chr5 52500190 52500335 -100036924 + (GA)n Simple_repeat Simple_repeat 1 145 0 1 985 644 247 20 46 chr5 52500621 52500816 -100036443 + B4A SINE B4 102 291 -1 2 985 291 248 79 44 chr5 52501090 52501204 -100036055 + MIR SINE MIR 102 219 -43 3 985 467 314 151 22 chr5 52501422 52501647 -100035612 - B4 SINE B4 -1 291 38 4 985 362 94 16 0 chr5 52502567 52502631 -100034628 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 985 321 26 0 0 chr5 52502757 52502795 -100034464 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 985 614 13 13 0 chr5 52504528 52504603 -100032656 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 985 201 74 0 0 chr5 52505189 52505216 -100032043 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 8 985 306 132 0 0 chr5 52505546 52505599 -100031660 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 985 528 93 0 0 chr5 52506915 52506990 -100030269 + (CCG)n Simple_repeat Simple_repeat 2 76 0 1 985 215 170 21 0 chr5 52507059 52507106 -100030153 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 985 180 152 0 0 chr5 52507215 52507248 -100030011 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 985 399 160 0 0 chr5 52507757 52507832 -100029427 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 985 509 192 109 23 chr5 52509590 52509718 -100027541 - B1F SINE Alu -7 142 4 1 985 687 46 0 0 chr5 52510900 52510987 -100026272 + (TCC)n Simple_repeat Simple_repeat 2 88 0 1 985 291 122 0 0 chr5 52511118 52511167 -100026092 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 1 985 462 337 83 17 chr5 52511219 52511521 -100025738 - LTR16C LTR ERVL -162 327 6 1 985 293 308 45 27 chr5 52511849 52511959 -100025300 + MLT1K LTR MaLR 450 561 -34 1 985 183 129 0 0 chr5 52512061 52512092 -100025167 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 1 985 851 75 8 0 chr5 52512156 52512276 -100024983 + (CTTTG)n Simple_repeat Simple_repeat 2 122 0 2 985 6612 53 19 23 chr5 52512362 52513223 -100024036 + L1_Mus2 LINE L1 5708 6564 -2 2 985 257 145 16 0 chr5 52513231 52513293 -100023966 + A-rich Low_complexity Low_complexity 2 64 0 2 985 602 263 53 67 chr5 52513294 52513502 -100023757 + B4 SINE B4 81 285 -7 2 985 2851 66 26 50 chr5 52514141 52514558 -100022701 - L1_Mus2 LINE L1 0 6566 6160 2 985 567 255 33 125 chr5 52514588 52515030 -100022229 + MTD LTR MaLR 6 404 -15 2 985 201 39 0 0 chr5 52516123 52516149 -100021110 + (GAA)n Simple_repeat Simple_repeat 2 27 0 2 985 531 0 0 0 chr5 52516490 52516549 -100020710 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 985 1142 238 23 8 chr5 52516560 52516822 -100020437 - B4 SINE B4 -25 267 2 2 985 363 250 0 0 chr5 52516896 52517028 -100020231 + (TG)n Simple_repeat Simple_repeat 1 132 0 2 985 369 239 14 7 chr5 52518368 52518507 -100018752 + GA-rich Low_complexity Low_complexity 2 141 0 3 985 231 276 25 50 chr5 52518525 52518605 -100018654 + PB1D10 SINE Alu 35 112 -5 3 985 270 262 325 32 chr5 52518680 52518806 -100018453 - RSINE1 SINE B4 0 165 3 3 985 1123 124 37 16 chr5 52519418 52519606 -100017653 + B2_Mm2 SINE B2 2 193 -2 3 985 349 283 50 0 chr5 52520686 52520785 -100016474 + MTEa LTR MaLR 1 104 -275 3 985 1515 190 48 26 chr5 52520803 52521155 -100016104 - ORR1D1 LTR MaLR -14 360 1 3 985 590 242 49 33 chr5 52521240 52521424 -100015835 + MTEa LTR MaLR 192 378 -1 3 985 264 279 82 41 chr5 52521577 52521674 -100015585 + RSINE1 SINE B4 13 113 -52 3 985 378 107 0 0 chr5 52521733 52521789 -100015470 + (TC)n Simple_repeat Simple_repeat 2 57 0 3 985 315 0 0 0 chr5 52521789 52521824 -100015435 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 985 23 0 0 0 chr5 52522268 52522291 -100014968 + AT_rich Low_complexity Low_complexity 1 23 0 3 985 279 0 0 0 chr5 52522494 52522525 -100014734 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 985 228 260 133 20 chr5 52522945 52523043 -100014216 + MIR SINE MIR 78 193 -75 4 985 331 291 0 12 chr5 52523097 52523177 -100014082 + ID4 SINE ID 5 83 0 4 985 1170 48 7 0 chr5 52523945 52524091 -100013168 + B1_Mus2 SINE Alu 1 147 0 4 985 559 263 0 11 chr5 52524306 52524448 -100012811 - B1F1 SINE Alu -7 143 10 4 985 310 169 31 0 chr5 52524451 52524516 -100012743 + MLT1G3 LTR MaLR 529 595 0 4 985 263 279 15 0 chr5 52524589 52524657 -100012602 - ID_B1 SINE B4 -8 216 148 4 985 579 224 143 18 chr5 52524786 52524921 -100012338 + B3A SINE B2 10 165 -33 4 985 387 0 0 0 chr5 52524921 52524964 -100012295 + (CATA)n Simple_repeat Simple_repeat 4 46 0 4 985 579 224 143 18 chr5 52524964 52524996 -100012263 + B3A SINE B2 166 198 0 4 985 301 238 53 83 chr5 52525758 52525891 -100011368 - RMER15 LTR ERVL -14 561 433 4 985 423 0 0 0 chr5 52526145 52526192 -100011067 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 985 2014 128 201 56 chr5 52527216 52527713 -100009546 - RMER4B LTR ERVK -2 583 15 5 985 520 182 171 16 chr5 52528512 52528635 -100008624 - B1_Mur2 SINE Alu -7 142 1 5 985 196 221 68 68 chr5 52528737 52528810 -100008449 - L2c LINE L2 -34 3353 3281 5 985 232 331 50 13 chr5 52529353 52529512 -100007747 + Tigger13a DNA MER2_type 252 416 -355 5 985 385 249 91 47 chr5 52529935 52530138 -100007121 + MLT1A0 LTR MaLR 189 369 -39 5 985 470 231 195 8 chr5 52531139 52531257 -100006002 + RSINE1 SINE B4 2 141 -24 5 985 450 0 0 0 chr5 52531260 52531310 -100005949 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 985 207 0 0 0 chr5 52531698 52531721 -100005538 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 5 985 301 266 38 168 chr5 52531890 52532021 -100005238 + B1_Mm SINE Alu 27 140 -7 5 985 201 94 0 0 chr5 52532656 52532688 -100004571 + (G)n Simple_repeat Simple_repeat 1 32 0 6 985 250 293 24 12 chr5 52533917 52534000 -100003259 - B1_Mur3 SINE Alu -65 84 1 6 985 734 243 62 43 chr5 52534016 52534227 -100003032 + B3 SINE B2 2 216 0 6 985 183 208 47 105 chr5 52535601 52535687 -100001572 + MIRm SINE MIR 138 218 -58 6 985 25 0 0 0 chr5 52535939 52535964 -100001295 + GC_rich Low_complexity Low_complexity 1 25 0 6 985 456 273 71 7 chr5 52536020 52536160 -100001099 + RSINE1 SINE B4 9 157 -8 6 985 225 0 0 0 chr5 52536405 52536430 -100000829 + (CAA)n Simple_repeat Simple_repeat 3 27 0 6 985 296 160 12 118 chr5 52536614 52536699 -100000560 + B2_Mm2 SINE B2 2 77 -118 6 985 26 0 0 0 chr5 52537632 52537658 -99999601 + AT_rich Low_complexity Low_complexity 1 26 0 6 985 302 224 139 58 chr5 52538562 52538770 -99998489 + L1M5 LINE L1 5549 5773 -406 6 985 593 299 10 94 chr5 52539298 52539586 -99997673 + B4A SINE B4 19 282 -10 7 985 270 185 68 80 chr5 52540703 52540777 -99996482 + B1F2 SINE Alu 42 118 -32 7 985 186 43 0 0 chr5 52540777 52540800 -99996459 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 7 985 235 185 68 80 chr5 52540800 52540813 -99996446 + B1_Mur4 SINE Alu 119 129 -21 7 985 744 268 41 10 chr5 52543301 52543497 -99993762 - B3 SINE B2 -6 210 9 7 985 279 0 0 0 chr5 52543897 52543928 -99993331 + (CGTG)n Simple_repeat Simple_repeat 1 31 0 7 985 666 253 121 0 chr5 52544356 52544546 -99992713 + B3 SINE B2 1 213 -3 7 985 270 211 0 17 chr5 52544753 52544811 -99992448 + B3 SINE B2 1 57 -159 7 985 21 0 0 0 chr5 52544839 52544860 -99992399 + AT_rich Low_complexity Low_complexity 1 21 0 7 985 225 0 0 0 chr5 52545550 52545575 -99991684 + (A)n Simple_repeat Simple_repeat 1 25 0 7 985 520 236 116 39 chr5 52545584 52545765 -99991494 + B3A SINE B2 4 198 0 7 985 1067 56 42 7 chr5 52545883 52546026 -99991233 - B1_Mus1 SINE Alu 0 148 1 8 985 1203 88 99 0 chr5 52546738 52546909 -99990350 + B2_Mm2 SINE B2 2 189 -6 8 985 327 240 283 13 chr5 52547671 52547823 -99989436 - B3A SINE B2 -5 193 1 8 985 27 0 0 0 chr5 52549487 52549514 -99987745 + AT_rich Low_complexity Low_complexity 1 27 0 8 985 267 189 0 0 chr5 52551349 52551402 -99985857 + (TAA)n Simple_repeat Simple_repeat 1 53 0 8 985 1005 177 136 5 chr5 52552529 52552728 -99984531 - URR1B DNA MER1_type 0 225 1 8 985 180 0 0 0 chr5 52554350 52554370 -99982889 + (A)n Simple_repeat Simple_repeat 1 20 0 8 985 216 0 0 0 chr5 52556083 52556107 -99981152 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 985 247 120 17 152 chr5 52557697 52557756 -99979503 - B1F SINE Alu -2 147 65 8 985 868 158 263 0 chr5 52558969 52559140 -99978119 + B3 SINE B2 1 216 0 8 985 22 56 0 0 chr5 52559268 52559304 -99977955 + AT_rich Low_complexity Low_complexity 1 36 0 9 986 259 325 127 25 chr5 52560220 52560378 -99976881 + MER20 DNA MER1_type 44 217 -2 9 986 225 128 0 0 chr5 52560437 52560484 -99976775 + (A)n Simple_repeat Simple_repeat 1 47 0 9 986 451 158 64 73 chr5 52561491 52561600 -99975659 + PB1D9 SINE Alu 2 109 -11 9 986 397 259 60 67 chr5 52561653 52561802 -99975457 + B1_Mur4 SINE Alu 3 150 0 9 986 266 288 0 0 chr5 52562071 52562130 -99975129 - B4 SINE B4 -119 173 115 9 986 774 186 14 21 chr5 52562160 52562303 -99974956 + B1_Mur3 SINE Alu 1 142 -7 9 986 694 105 9 9 chr5 52562461 52562567 -99974692 + B2_Mm2 SINE B2 2 107 -88 9 986 288 300 255 20 chr5 52564062 52564574 -99972685 - Kanga1c DNA Tc2 -46 683 55 9 986 21 0 0 0 chr5 52564628 52564649 -99972610 + AT_rich Low_complexity Low_complexity 1 21 0 9 986 849 280 100 29 chr5 52564764 52565073 -99972186 + MTEb LTR MaLR 49 379 0 1 986 352 301 116 0 chr5 52565168 52565314 -99971945 - MER2B DNA MER2_type -12 324 162 1 986 1167 82 0 14 chr5 52565330 52565478 -99971781 - B1_Mus2 SINE Alu 0 147 2 1 986 21 0 0 0 chr5 52565540 52565561 -99971698 + AT_rich Low_complexity Low_complexity 1 21 0 1 986 25 0 0 0 chr5 52565864 52565889 -99971370 + AT_rich Low_complexity Low_complexity 1 25 0 1 986 1218 118 32 5 chr5 52566188 52566376 -99970883 + B2_Mm2 SINE B2 1 193 -2 1 986 997 193 224 26 chr5 52567463 52567766 -99969493 - ORR1D1 LTR MaLR -6 368 6 1 986 250 289 124 0 chr5 52569051 52569148 -99968111 + B1_Mur2 SINE Alu 38 146 -3 1 986 285 253 0 51 chr5 52569359 52569438 -99967821 + ID2 SINE ID 8 82 -1 1 986 1187 62 7 7 chr5 52570976 52571122 -99966137 + B1_Mus2 SINE Alu 2 147 0 1 986 389 95 16 0 chr5 52571127 52571190 -99966069 + (GGA)n Simple_repeat Simple_repeat 2 65 0 1 986 946 118 66 7 chr5 52571268 52571405 -99965854 - B1_Mus1 SINE Alu -1 147 3 1 986 22 35 0 0 chr5 52572475 52572504 -99964755 + AT_rich Low_complexity Low_complexity 1 29 0 1 986 23 33 0 0 chr5 52573834 52573864 -99963395 + AT_rich Low_complexity Low_complexity 1 30 0 1 986 338 221 168 0 chr5 52574038 52574133 -99963126 - PB1D7 SINE Alu -9 111 1 1 986 296 263 172 40 chr5 52574257 52574356 -99962903 + PB1D10 SINE Alu 1 112 -5 1 986 482 349 78 7 chr5 52574821 52574974 -99962285 + RSINE1 SINE B4 2 165 0 1 986 329 319 26 26 chr5 52575164 52575280 -99961979 - PB1D10 SINE Alu 0 117 2 1 986 304 257 13 39 chr5 52576429 52576506 -99960753 + B1_Mur3 SINE Alu 5 79 -70 1 986 876 88 88 7 chr5 52577159 52577296 -99959963 + B1_Mus1 SINE Alu 1 148 0 1 986 260 176 39 0 chr5 52577515 52577566 -99959693 + Lx6 LINE L1 7401 7453 -7 1 986 222 255 268 76 chr5 52577807 52577964 -99959295 + B4A SINE B4 39 225 -67 1 986 662 169 7 71 chr5 52578609 52578749 -99958510 + B1_Mur2 SINE Alu 7 137 -12 1 986 408 20 0 0 chr5 52578754 52578803 -99958456 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 1 986 210 219 78 0 chr5 52582059 52582123 -99955136 - MIRc SINE MIR -142 126 58 1 986 216 0 0 0 chr5 52582407 52582431 -99954828 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 1 986 788 175 22 0 chr5 52582431 52582568 -99954691 - B1_Mur3 SINE Alu -9 140 1 1 986 700 248 15 8 chr5 52582972 52583106 -99954153 + B1_Mur2 SINE Alu 2 136 -13 1 986 225 178 0 0 chr5 52583112 52583157 -99954102 + CT-rich Low_complexity Low_complexity 1 45 0 1 986 261 0 0 0 chr5 52583173 52583202 -99954057 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 986 2327 80 16 0 chr5 52583441 52583755 -99953504 + ORR1A2 LTR MaLR 1 319 -8 1 986 1178 211 123 33 chr5 52583809 52584176 -99953083 - MT2A LTR ERVL 0 533 134 1 986 674 217 7 7 chr5 52584172 52584311 -99952948 + B1_Mur2 SINE Alu 11 149 0 1 986 467 167 24 0 chr5 52584316 52584400 -99952859 - MT2A LTR ERVL -445 88 3 1 986 457 213 95 11 chr5 52584770 52584865 -99952394 - PB1D10 SINE Alu -7 110 8 1 986 405 286 57 8 chr5 52584949 52585116 -99952143 - L1M2 LINE L1 -4255 2852 2705 1 986 198 71 0 0 chr5 52585209 52585237 -99952022 + (T)n Simple_repeat Simple_repeat 1 28 0 1 986 875 194 7 0 chr5 52585242 52585386 -99951873 - B1_Mus1 SINE Alu 0 148 4 1 986 1783 153 43 6 chr5 52585665 52585993 -99951266 - RMER5 LTR ERV1 0 534 195 1 986 183 42 0 0 chr5 52586008 52586032 -99951227 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 986 517 181 189 9 chr5 52586032 52586138 -99951121 - B1_Mur4 SINE Alu -11 139 15 1 986 1438 229 198 31 chr5 52586138 52586688 -99950571 + RLTR26 LTR ERVK 1 642 0 1 986 523 170 32 0 chr5 52586709 52586803 -99950456 - B3 SINE B2 -12 204 108 1 986 231 224 61 0 chr5 52586800 52586849 -99950410 - B3 SINE B2 -53 163 112 1 986 771 232 26 0 chr5 52586850 52587005 -99950254 - B3 SINE B2 -53 163 5 1 986 349 239 40 78 chr5 52587020 52587205 -99950054 - L1MB2 LINE L1 -49 6119 5935 1 986 822 211 50 6 chr5 52587211 52587392 -99949867 - RMER5 LTR ERV1 -342 192 4 1 986 225 0 0 0 chr5 52587400 52587425 -99949834 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 986 320 274 43 29 chr5 52587470 52587609 -99949650 - L1M2 LINE L1 -4944 2086 1946 1 986 207 0 0 0 chr5 52587633 52587656 -99949603 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 986 1194 76 0 0 chr5 52587656 52587800 -99949459 - B1_Mus2 SINE Alu -3 144 1 1 986 1262 182 18 9 chr5 52587927 52588154 -99949105 + RLTR17 LTR ERVK 194 422 -270 1 986 836 147 20 0 chr5 52588201 52588351 -99948908 + Lx4A LINE L1 5691 5843 -1215 1 986 1377 137 9 0 chr5 52588354 52588566 -99948693 + Lx4A LINE L1 6506 6719 -339 1 986 1443 82 16 16 chr5 52589027 52589214 -99948045 + B2_Mm2 SINE B2 1 187 -8 1 986 195 129 0 0 chr5 52589223 52589254 -99948005 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 1 986 256 232 29 14 chr5 52589633 52589703 -99947556 - L1M2 LINE L1 -5156 1881 1811 1 986 901 167 21 0 chr5 52589737 52589881 -99947378 - B1_Mur3 SINE Alu -1 148 2 1 986 794 154 49 0 chr5 52590086 52590248 -99947011 - RCHARR1 DNA MER1_type -75 899 730 1 986 754 238 0 52 chr5 52590250 52590405 -99946854 + B1_Mur2 SINE Alu 3 149 0 1 986 2160 245 142 11 chr5 52590419 52591062 -99946197 + Lx8 LINE L1 6573 7299 -174 1 986 574 232 40 0 chr5 52591082 52591207 -99946052 - ORR1E LTR MaLR -229 130 1 1 986 2655 155 2 58 chr5 52591271 52591717 -99945542 - MTC LTR MaLR 0 421 1 1 986 682 304 13 6 chr5 52591720 52591879 -99945380 + RSINE1 SINE B4 4 163 -2 1 986 856 175 22 0 chr5 52591922 52592059 -99945200 + B1_Mur4 SINE Alu 1 140 -10 1 986 555 230 37 6 chr5 52592072 52592186 -99945073 + RCHARR1 DNA MER1_type 808 926 -48 1 986 310 187 100 62 chr5 52592186 52592266 -99944993 + ID4_ SINE ID 1 83 0 1 986 555 230 37 6 chr5 52592266 52592313 -99944946 + RCHARR1 DNA MER1_type 927 973 -1 1 986 267 192 39 0 chr5 52592625 52592703 -99944556 + CT-rich Low_complexity Low_complexity 2 82 0 1 986 423 0 0 0 chr5 52592746 52592793 -99944466 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 1 986 720 272 115 5 chr5 52593400 52593592 -99943667 + B3 SINE B2 2 214 -2 1 986 723 305 40 8 chr5 52593835 52594083 -99943176 + L1M5 LINE L1 4747 5002 -1144 1 986 285 281 37 148 chr5 52594374 52594493 -99942766 + L1M5 LINE L1 5321 5446 -748 1 986 571 233 113 0 chr5 52594493 52594626 -99942633 + B1F2 SINE Alu 1 148 -1 1 986 276 281 37 148 chr5 52594626 52594723 -99942536 + L1M5 LINE L1 5440 5513 -611 1 986 432 0 0 0 chr5 52595098 52595146 -99942113 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 986 489 181 237 17 chr5 52595265 52595383 -99941876 + B1_Mur4 SINE Alu 7 150 0 1 986 725 307 31 111 chr5 52595440 52595828 -99941431 - ORR1E LTR MaLR 0 359 3 1 986 231 233 27 27 chr5 52595831 52595906 -99941353 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 1 986 25 31 0 0 chr5 52596233 52596265 -99940994 + AT_rich Low_complexity Low_complexity 1 32 0 1 986 3359 59 3 3 chr5 52596653 52597045 -99940214 + MTA_Mm LTR MaLR 5 396 0 1 986 351 197 67 68 chr5 52597118 52597252 -99940007 - PB1D10 SINE Alu -1 149 19 1 986 959 163 0 0 chr5 52597314 52597461 -99939798 + B1_Mur2 SINE Alu 1 147 -2 1 986 183 318 16 16 chr5 52597525 52597589 -99939670 + L2a LINE L2 3339 3402 -24 1 986 282 281 0 79 chr5 52597600 52597689 -99939570 + B4 SINE B4 149 230 -62 1 986 825 254 74 5 chr5 52597690 52597892 -99939367 + B3 SINE B2 1 216 0 1 986 732 261 29 25 chr5 52597918 52598122 -99939137 + B3 SINE B2 2 206 -10 1 986 342 0 0 0 chr5 52598360 52598398 -99938861 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 986 261 0 0 0 chr5 52599467 52599496 -99937763 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1 986 1309 32 0 0 chr5 52599496 52599653 -99937606 - B2_Mm2 SINE B2 -36 159 3 1 986 791 218 128 0 chr5 52599801 52599989 -99937270 - B3 SINE B2 -4 212 1 1 986 459 0 0 0 chr5 52599997 52600048 -99937211 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 986 629 153 10 0 chr5 52600320 52600418 -99936841 + B1_Mur4 SINE Alu 16 114 -36 1 986 411 73 0 0 chr5 52600423 52600478 -99936781 + (TGAA)n Simple_repeat Simple_repeat 3 57 0 1 986 272 224 0 0 chr5 52600484 52600533 -99936726 + ID_B1 SINE B4 141 189 -35 1 986 304 174 0 0 chr5 52600489 52600535 -99936724 + B1_Mus2 SINE Alu 66 111 -36 1 986 401 0 0 20 chr5 52600539 52600589 -99936670 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 1 986 215 233 35 11 chr5 52600718 52600805 -99936454 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 986 190 164 36 0 chr5 52600842 52600897 -99936362 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 986 284 253 36 60 chr5 52600907 52600991 -99936268 - RSINE1 SINE B4 -2 163 82 1 986 585 247 78 20 chr5 52601068 52601221 -99936038 - B3A SINE B2 -36 162 1 1 986 297 0 0 0 chr5 52601233 52601266 -99935993 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 986 342 273 10 34 chr5 52601269 52601365 -99935894 - B1F2 SINE Alu -53 96 3 1 986 339 256 0 27 chr5 52601307 52601383 -99935876 - B4A SINE B4 -147 145 81 1 986 964 178 200 0 chr5 52601383 52601563 -99935696 - B3 SINE B2 0 216 1 1 986 284 311 0 185 chr5 52601563 52601632 -99935627 - B4 SINE B4 -211 81 27 1 986 250 337 22 33 chr5 52602894 52602986 -99934273 + ID_B1 SINE B4 71 161 -63 1 986 416 211 0 0 chr5 52602918 52602989 -99934270 + B1_Mur4 SINE Alu 17 87 -63 1 986 1884 14 0 27 chr5 52602989 52603210 -99934049 + L1Md_A LINE L1 6368 6582 0 1 986 405 229 83 37 chr5 52603210 52603247 -99934012 + B1_Mur3 SINE Alu 87 129 -20 1 986 513 280 0 0 chr5 52603508 52603608 -99933651 + B3 SINE B2 23 122 -94 2 986 1211 106 100 0 chr5 52603682 52603852 -99933407 - B2_Mm2 SINE B2 -8 187 1 2 986 905 256 30 5 chr5 52603852 52604052 -99933207 - MTD LTR MaLR -209 210 6 2 986 387 0 0 0 chr5 52604374 52604417 -99932842 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 986 501 62 0 0 chr5 52604805 52604870 -99932389 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 986 207 0 0 0 chr5 52605449 52605472 -99931787 + (A)n Simple_repeat Simple_repeat 1 23 0 2 986 494 243 38 103 chr5 52605504 52605766 -99931493 - ORR1E LTR MaLR -112 247 3 2 986 330 26 0 0 chr5 52606169 52606208 -99931051 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 2 986 357 196 229 18 chr5 52606304 52606413 -99930846 - L1ME1 LINE L1 -2 6177 6046 2 986 228 229 16 16 chr5 52606513 52606575 -99930684 - L1ME1 LINE L1 -256 5917 5856 2 986 1116 75 35 13 chr5 52606632 52606819 -99930440 - URR1B DNA MER1_type 0 225 6 2 986 441 328 17 17 chr5 52607303 52607480 -99929779 - L1ME1 LINE L1 -344 5820 5644 2 986 1269 74 0 11 chr5 52608216 52608474 -99928785 + (TCC)n Simple_repeat Simple_repeat 1 255 0 2 986 281 64 0 41 chr5 52608475 52608524 -99928735 + (TCTCTG)n Simple_repeat Simple_repeat 6 52 0 2 986 387 296 120 0 chr5 52608535 52608643 -99928616 - ID_B1 SINE B4 -20 204 84 2 986 220 312 129 14 chr5 52608652 52608792 -99928467 - MIRb SINE MIR -109 159 4 2 986 626 323 43 80 chr5 52609805 52610219 -99927040 - MLT1H LTR MaLR -133 416 18 2 986 497 340 19 66 chr5 52611897 52612155 -99925104 + MamRep38 DNA hAT 1 246 -49 2 986 618 51 0 0 chr5 52612292 52612370 -99924889 + (TC)n Simple_repeat Simple_repeat 1 78 0 2 986 1124 52 0 0 chr5 52612370 52612506 -99924753 - B1_Mus1 SINE Alu -12 136 1 2 986 337 20 40 0 chr5 52612732 52612782 -99924477 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 2 986 349 279 63 82 chr5 52613093 52613300 -99923959 - MLT1K LTR MaLR -10 585 383 2 986 265 263 48 57 chr5 52613326 52613431 -99923828 + MER20 DNA MER1_type 16 119 -100 2 986 1040 228 154 45 chr5 52613449 52613780 -99923479 + ORR1D2 LTR MaLR 4 370 0 2 986 898 132 6 6 chr5 52614006 52614166 -99923093 + (GAA)n Simple_repeat Simple_repeat 2 161 0 2 986 414 0 0 0 chr5 52614699 52614745 -99922514 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 986 290 98 0 19 chr5 52614745 52614796 -99922463 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 986 549 289 142 29 chr5 52614808 52615054 -99922205 - B4A SINE B4 -16 276 3 2 986 567 277 32 48 chr5 52616025 52616211 -99921048 + B3A SINE B2 1 183 -15 2 986 597 296 18 25 chr5 52616255 52616407 -99920852 + RSINE1 SINE B4 4 158 -7 2 986 3085 71 15 2 chr5 52616407 52616802 -99920457 + MTB LTR MaLR 1 400 0 2 986 207 0 0 0 chr5 52616815 52616838 -99920421 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 2 986 331 289 0 11 chr5 52617100 52617191 -99920068 - RMER5 LTR ERV1 -10 524 435 2 986 238 265 136 29 chr5 52617237 52617377 -99919882 - RMER5 LTR ERV1 -347 187 33 2 986 817 185 5 64 chr5 52618147 52618349 -99918910 + B2_Mm2 SINE B2 6 195 0 2 986 915 246 9 19 chr5 52618356 52618571 -99918688 + B3 SINE B2 1 213 -3 2 986 687 185 0 30 chr5 52618760 52618894 -99918365 - B3 SINE B2 -86 130 1 2 986 750 214 15 87 chr5 52619257 52619452 -99917807 + B3A SINE B2 1 181 -17 2 986 1267 103 16 5 chr5 52619844 52620030 -99917229 - B2_Mm1a SINE B2 -3 190 3 2 986 339 237 53 0 chr5 52620655 52620731 -99916528 - ORR1E LTR MaLR -9 350 271 2 986 2646 178 120 10 chr5 52620919 52621436 -99915823 - Lx5 LINE L1 0 7050 6477 2 986 722 164 113 26 chr5 52622060 52622254 -99915005 - RMER5 LTR ERV1 -281 253 43 2 986 189 0 0 0 chr5 52622411 52622432 -99914827 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 2 986 744 118 8 8 chr5 52622549 52622677 -99914582 + MTC LTR MaLR 103 230 -191 2 986 1222 197 11 19 chr5 52622710 52622974 -99914285 + RMER12 LTR ERVK 1 262 -1060 2 986 1819 157 10 86 chr5 52623007 52623386 -99913873 - ORR1B1 LTR MaLR -8 386 3 2 986 672 13 0 0 chr5 52623433 52623510 -99913749 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 986 188 32 97 0 chr5 52623771 52623802 -99913457 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 2 986 939 159 14 0 chr5 52624271 52624416 -99912843 - B1_Mur4 SINE Alu 0 150 4 2 986 645 217 0 0 chr5 52624696 52624876 -99912383 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 2 986 432 280 111 8 chr5 52624901 52625027 -99912232 - RSINE1 SINE B4 -24 141 3 2 986 25 31 0 0 chr5 52625029 52625061 -99912198 + AT_rich Low_complexity Low_complexity 1 32 0 2 986 300 143 0 0 chr5 52625070 52625119 -99912140 - Lx8 LINE L1 -11 7462 7414 2 986 249 253 0 60 chr5 52625675 52625759 -99911500 - CR1_Mam LINE CR1 -696 1508 1430 2 986 899 166 35 0 chr5 52626498 52626643 -99910616 + B1_Mur4 SINE Alu 1 150 0 2 986 1830 165 112 17 chr5 52626711 52627068 -99910191 - ORR1B1 LTR MaLR -3 391 1 2 986 254 29 0 28 chr5 52627119 52627155 -99910104 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 986 1139 90 0 0 chr5 52627155 52627300 -99909959 - B1_Mus1 SINE Alu -3 145 1 2 986 288 53 0 0 chr5 52627421 52627459 -99909800 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 986 306 0 0 0 chr5 52627459 52627492 -99909767 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 986 336 24 0 0 chr5 52627608 52627649 -99909610 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 986 506 211 14 92 chr5 52627732 52627873 -99909386 + B1_Mur1 SINE Alu 14 143 -6 2 986 1216 61 0 0 chr5 52628095 52628242 -99909017 - B1_Mus2 SINE Alu 0 147 1 2 986 1115 266 98 19 chr5 52628270 52628595 -99908664 - MTD LTR MaLR -68 351 1 2 986 328 291 37 19 chr5 52628909 52629070 -99908189 + MER5A1 DNA MER1_type 3 166 0 2 986 833 223 89 9 chr5 52630331 52630544 -99906715 - Lx8 LINE L1 -228 7245 7016 2 986 523 161 49 82 chr5 52630562 52630684 -99906575 - B1F SINE Alu 0 149 32 2 986 974 171 96 19 chr5 52631270 52631479 -99905780 - URR1B DNA MER1_type 0 225 1 2 986 828 0 0 0 chr5 52631632 52631724 -99905535 + (TTTCC)n Simple_repeat Simple_repeat 4 95 0 2 986 352 331 108 36 chr5 52631754 52632005 -99905254 + MLT1J LTR MaLR 226 494 -18 2 986 275 356 63 16 chr5 52632279 52632533 -99904726 + LTR16C LTR ERVL 153 418 -71 2 986 294 272 0 37 chr5 52632705 52632812 -99904447 + (TATG)n Simple_repeat Simple_repeat 4 106 0 2 986 734 150 0 0 chr5 52633240 52633360 -99903899 + ORR1D1 LTR MaLR 1 120 -254 2 986 210 164 0 52 chr5 52633434 52633492 -99903767 + A-rich Low_complexity Low_complexity 1 55 0 2 986 21 36 0 0 chr5 52633492 52633520 -99903739 + AT_rich Low_complexity Low_complexity 1 28 0 2 986 613 210 88 62 chr5 52634168 52634361 -99902898 - B3A SINE B2 0 198 1 2 986 1344 248 12 27 chr5 52634673 52635005 -99902254 - MTEa LTR MaLR -3 376 50 2 986 246 167 0 0 chr5 52635058 52635100 -99902159 - MTEa LTR MaLR -320 59 18 2 986 225 271 51 0 chr5 52635111 52635170 -99902089 - LTR16A LTR ERVL -102 349 288 2 986 510 213 83 0 chr5 52635774 52635882 -99901377 + PB1D10 SINE Alu 1 117 0 2 986 23 0 0 0 chr5 52636401 52636424 -99900835 + AT_rich Low_complexity Low_complexity 1 23 0 2 986 244 263 26 0 chr5 52637736 52637812 -99899447 - MADE2 DNA Mariner 0 80 3 2 986 221 187 40 13 chr5 52637839 52637915 -99899344 + (TA)n Simple_repeat Simple_repeat 2 79 0 2 986 354 98 0 0 chr5 52638675 52638726 -99898533 + (ATG)n Simple_repeat Simple_repeat 3 53 0 2 986 432 0 0 0 chr5 52638726 52638774 -99898485 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 986 1033 297 94 17 chr5 52639172 52639586 -99897673 + Charlie4a DNA MER1_type 61 506 -2 2 986 295 298 0 12 chr5 52639586 52639671 -99897588 + PB1D10 SINE Alu 1 84 -33 2 986 228 274 68 14 chr5 52640524 52640598 -99896661 - MTE2a LTR MaLR -16 363 286 2 986 508 286 112 72 chr5 52640882 52641187 -99896072 - MTE2a LTR MaLR -44 335 19 2 986 495 308 14 0 chr5 52641320 52641463 -99895796 - ORR1E LTR MaLR -214 145 1 2 986 406 181 72 0 chr5 52641546 52641629 -99895630 + B3A SINE B2 1 89 -109 2 986 517 40 26 0 chr5 52641639 52641715 -99895544 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 986 362 264 62 103 chr5 52641715 52641815 -99895444 + B4 SINE B4 81 186 -106 2 986 429 191 34 0 chr5 52641742 52641831 -99895428 + PB1D9 SINE Alu 22 113 -7 2 986 584 309 11 6 chr5 52641848 52642024 -99895235 + B3A SINE B2 4 180 -18 2 986 478 280 7 29 chr5 52642090 52642226 -99895033 + B1F SINE Alu 1 133 -16 2 986 328 281 70 0 chr5 52642231 52642345 -99894914 - Lx5 LINE L1 -429 6621 6500 2 986 1003 227 14 0 chr5 52642635 52642842 -99894417 + B3 SINE B2 1 210 -6 2 986 25 31 0 0 chr5 52642842 52642874 -99894385 + AT_rich Low_complexity Low_complexity 1 32 0 2 986 527 319 7 0 chr5 52642883 52643024 -99894235 - B4A SINE B4 -126 166 25 2 986 1444 217 118 12 chr5 52643111 52643442 -99893817 + ORR1D2 LTR MaLR 5 370 0 2 986 583 44 253 0 chr5 52644117 52644208 -99893051 + B1_Mus1 SINE Alu 23 136 -12 2 986 240 35 0 0 chr5 52644210 52644239 -99893020 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 986 779 199 0 7 chr5 52644363 52644505 -99892754 - B1_Mus2 SINE Alu -1 146 6 2 986 844 212 137 24 chr5 52645316 52645603 -99891656 + MTD LTR MaLR 90 405 -14 2 986 389 299 31 8 chr5 52645710 52645838 -99891421 + GA-rich Low_complexity Low_complexity 6 136 0 3 986 211 224 16 49 chr5 52646620 52646681 -99890578 - L2a LINE L2 -77 3349 3291 3 986 271 0 0 49 chr5 52646682 52646723 -99890536 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 986 444 176 38 29 chr5 52646960 52647065 -99890194 + MLT1A1 LTR MaLR 291 396 -12 3 986 485 280 41 26 chr5 52647080 52647337 -99889922 + MLT1A1-int LTR MaLR 2 275 -1305 3 986 310 310 11 11 chr5 52647464 52647552 -99889707 - B4A SINE B4 -204 88 1 3 986 386 274 59 59 chr5 52647552 52647734 -99889525 - B4A SINE B4 -65 227 46 3 986 846 271 24 55 chr5 52648767 52648994 -99888265 + B4A SINE B4 1 223 -69 3 986 194 105 0 26 chr5 52648994 52649033 -99888226 + (CTAA)n Simple_repeat Simple_repeat 3 40 0 3 986 846 271 24 55 chr5 52649033 52649094 -99888165 + B4A SINE B4 224 280 -12 3 986 300 111 0 0 chr5 52649152 52649197 -99888062 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 3 986 246 328 9 26 chr5 52650371 52650487 -99886772 + GA-rich Low_complexity Low_complexity 4 117 0 3 986 402 74 0 0 chr5 52650610 52650664 -99886595 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 986 601 219 0 0 chr5 52650668 52650773 -99886486 - RSINE1 SINE B4 -33 132 28 3 986 336 24 0 0 chr5 52652016 52652057 -99885202 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 986 606 218 0 0 chr5 52652497 52652653 -99884606 + (TG)n Simple_repeat Simple_repeat 1 156 0 3 986 283 246 0 44 chr5 52652659 52652727 -99884532 - B3A SINE B2 -16 182 118 3 986 535 162 10 0 chr5 52653205 52653304 -99883955 - B3 SINE B2 -116 100 1 3 986 7876 70 25 1 chr5 52653339 52654360 -99882899 - L1_Mus4 LINE L1 -1 6635 5590 3 986 501 97 0 0 chr5 52654902 52654974 -99882285 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 986 333 324 27 61 chr5 52655118 52655131 -99882128 - B4 SINE B4 -69 223 214 3 986 266 0 29 0 chr5 52655131 52655165 -99882094 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 3 986 333 324 27 61 chr5 52655165 52655178 -99882081 - B4 SINE B4 -79 213 86 3 986 429 261 0 43 chr5 52655178 52655294 -99881965 - B1_Mur1 SINE Alu -38 111 1 3 986 1289 257 19 55 chr5 52655643 52656009 -99881250 - MTEa LTR MaLR 0 379 27 3 986 198 354 111 5 chr5 52657221 52657437 -99879822 + MIRb SINE MIR 20 258 -10 3 986 454 281 38 23 chr5 52657536 52657667 -99879592 - B1_Mur2 SINE Alu -5 144 12 3 986 274 277 48 103 chr5 52657539 52657684 -99879575 - B4 SINE B4 -74 218 82 3 986 195 42 0 0 chr5 52657693 52657717 -99879542 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 986 732 268 105 0 chr5 52657745 52657973 -99879286 - B4 SINE B4 -30 262 11 3 986 219 265 41 0 chr5 52657996 52658045 -99879214 - ID4 SINE ID -1 82 32 3 986 1017 199 59 10 chr5 52658204 52658407 -99878852 - B3 SINE B2 -3 213 1 3 986 398 292 146 40 chr5 52659370 52659691 -99877568 - MLT1J1 LTR MaLR -29 415 61 3 986 276 290 87 24 chr5 52659716 52659843 -99877416 - MLT1J1-int LTR MaLR -3 1384 1250 3 986 739 293 202 50 chr5 52660584 52660669 -99876590 - ORR1E LTR MaLR -2 368 241 3 986 3017 92 10 12 chr5 52660669 52661077 -99876182 - MTB_Mm LTR MaLR 0 407 1 3 986 739 294 59 17 chr5 52661077 52661307 -99875952 - ORR1E LTR MaLR -118 241 1 3 986 357 291 17 0 chr5 52661508 52661625 -99875634 - Lx9 LINE L1 -194 7450 7332 3 986 830 171 20 0 chr5 52661633 52661779 -99875480 + B1_Mur4 SINE Alu 1 149 -1 3 986 720 130 0 0 chr5 52662057 52662172 -99875087 + (GAA)n Simple_repeat Simple_repeat 3 117 0 3 986 1449 190 23 29 chr5 52663234 52663442 -99873817 - ORR1D1 LTR MaLR -2 372 166 3 986 243 79 0 0 chr5 52663442 52663480 -99873779 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 3 986 1449 190 23 29 chr5 52663480 52663580 -99873679 - ORR1D1 LTR MaLR -209 165 66 3 986 546 294 4 109 chr5 52663586 52663637 -99873622 - Lx9 LINE L1 -279 7365 7319 3 986 765 173 23 0 chr5 52663637 52663770 -99873489 + B1_Mur4 SINE Alu 1 136 -14 3 986 216 0 0 0 chr5 52663774 52663798 -99873461 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 3 986 546 294 4 109 chr5 52663798 52663997 -99873262 - Lx9 LINE L1 -326 7318 7139 3 986 405 302 53 42 chr5 52663990 52664180 -99873079 - L1ME2 LINE L1 -24 6140 5949 3 986 374 286 86 16 chr5 52664220 52664236 -99873023 - B4 SINE B4 -72 220 86 3 986 489 254 18 0 chr5 52664236 52664346 -99872913 - B1F2 SINE Alu -37 112 1 3 986 233 88 0 0 chr5 52664525 52664559 -99872700 - ORR1C1 LTR MaLR 0 378 345 3 986 1352 185 97 47 chr5 52664561 52664901 -99872358 - RLTR20C LTR ERVK 0 534 178 3 986 899 148 122 91 chr5 52666173 52666403 -99870856 - ORR1C1 LTR MaLR -141 237 1 3 986 1180 256 40 45 chr5 52666749 52667174 -99870085 + L1MA5A LINE L1 5509 5931 -366 3 986 230 204 0 0 chr5 52667259 52667303 -99869956 - ORR1A4 LTR MaLR -134 195 152 3 986 21 36 0 0 chr5 52667314 52667342 -99869917 + AT_rich Low_complexity Low_complexity 1 28 0 3 986 2035 123 12 21 chr5 52667382 52667714 -99869545 + ORR1A4 LTR MaLR 1 329 0 3 986 1697 21 0 0 chr5 52668193 52668383 -99868876 - B2_Mm1a SINE B2 -3 190 1 3 986 218 306 118 19 chr5 52669652 52669791 -99867468 - MIR SINE MIR -58 210 65 3 986 354 45 0 0 chr5 52669857 52669901 -99867358 + (TGG)n Simple_repeat Simple_repeat 1 44 0 3 986 192 200 0 0 chr5 52669903 52669943 -99867316 + (TATG)n Simple_repeat Simple_repeat 3 42 0 3 986 619 232 194 19 chr5 52670003 52670022 -99867237 - B4A SINE B4 -40 252 227 3 986 865 191 132 0 chr5 52670022 52670211 -99867048 - B3 SINE B2 -1 215 2 3 986 619 232 194 19 chr5 52670211 52670402 -99866857 - B4A SINE B4 -66 226 5 3 986 368 246 192 52 chr5 52670831 52670933 -99866326 + ID_B1 SINE B4 1 105 -119 3 986 824 263 179 36 chr5 52670933 52671296 -99865963 + MTD LTR MaLR 5 419 0 3 986 368 246 192 52 chr5 52671296 52671386 -99865873 + ID_B1 SINE B4 106 220 -4 3 986 362 245 10 31 chr5 52671510 52671607 -99865652 - Lx8 LINE L1 -2 7471 7377 3 986 1013 264 49 26 chr5 52672323 52672669 -99864590 - RMER5 LTR ERV1 -69 465 112 3 986 352 317 8 2 chr5 52673640 52673758 -99863501 + B1F2 SINE Alu 2 117 0 3 986 216 0 0 0 chr5 52673772 52673796 -99863463 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 986 773 128 15 0 chr5 52675308 52675441 -99861818 + (TTCC)n Simple_repeat Simple_repeat 2 136 0 3 986 670 141 16 0 chr5 52675722 52675850 -99861409 + CT-rich Low_complexity Low_complexity 3 132 0 3 986 849 71 0 0 chr5 52675853 52675966 -99861293 + (TTCC)n Simple_repeat Simple_repeat 2 114 0 3 986 405 0 0 0 chr5 52676142 52676187 -99861072 + (T)n Simple_repeat Simple_repeat 1 45 0 3 986 9203 2 0 0 chr5 52676310 52677363 -99859896 - L1Md_A LINE L1 0 6582 5530 3 986 3851 125 21 35 chr5 52677426 52678172 -99859087 + RMER17A LTR ERVK 1 736 -15 3 986 828 221 95 0 chr5 52678421 52678611 -99858648 - B3 SINE B2 -7 209 2 3 986 662 231 7 14 chr5 52678631 52678776 -99858483 - B1_Mur1 SINE Alu -1 148 5 3 986 420 291 86 49 chr5 52678781 52679011 -99858248 - L1MD LINE L1 -775 5584 5343 3 986 3153 63 0 27 chr5 52679011 52679418 -99857841 - MTA_Mm LTR MaLR 0 396 1 3 986 420 291 86 49 chr5 52679418 52679454 -99857805 - L1MD LINE L1 -1017 5342 5308 3 986 450 0 0 0 chr5 52679468 52679518 -99857741 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 986 629 203 16 8 chr5 52679565 52679694 -99857565 - RSINE1 SINE B4 -33 132 3 3 986 429 305 118 5 chr5 52679736 52679940 -99857319 + Tigger5 DNA MER2_type 1 227 -2179 3 986 368 266 97 0 chr5 52679998 52680111 -99857148 + RSINE1 SINE B4 3 126 -39 3 986 344 325 116 6 chr5 52680177 52680341 -99856918 + Tigger5 DNA MER2_type 2224 2405 -1 3 986 453 315 35 68 chr5 52680355 52680433 -99856826 - L1MD LINE L1 -891 5255 5191 3 986 626 0 14 0 chr5 52680433 52680507 -99856752 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 986 453 315 35 68 chr5 52680507 52680768 -99856491 - L1MD LINE L1 -956 5190 4927 3 986 746 224 45 0 chr5 52680885 52681064 -99856195 - B3 SINE B2 -6 210 24 3 986 201 94 0 0 chr5 52681080 52681112 -99856147 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3 986 475 269 116 32 chr5 52681115 52681487 -99855772 - L1MD LINE L1 -2785 3361 2959 3 986 718 290 28 8 chr5 52681497 52681744 -99855515 + MLT1B LTR MaLR 26 277 -113 3 986 706 297 40 14 chr5 52681780 52682057 -99855202 - L1MD LINE L1 -3370 2776 2493 3 986 339 241 120 7 chr5 52682195 52682221 -99855038 - RSINE1 SINE B4 -4 161 130 3 986 396 0 0 0 chr5 52682221 52682265 -99854994 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 986 339 241 120 7 chr5 52682265 52682380 -99854879 - RSINE1 SINE B4 -36 129 4 3 986 322 345 12 0 chr5 52682390 52682558 -99854701 - L1MDa LINE L1 -3733 2804 2635 3 986 324 326 84 47 chr5 52682602 52682844 -99854415 - L1MDa LINE L1 -5846 787 453 3 986 324 0 0 0 chr5 52682881 52682917 -99854342 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 986 708 194 60 0 chr5 52683078 52683212 -99854047 - B1_Mur1 SINE Alu -7 142 1 3 986 368 307 61 26 chr5 52683617 52683848 -99853411 + MLT1A LTR MaLR 135 373 -1 3 986 1018 130 6 6 chr5 52684205 52684383 -99852876 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 3 986 585 28 0 0 chr5 52684385 52684456 -99852803 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 3 986 1387 243 38 6 chr5 52684933 52685273 -99851986 - MTE2b LTR MaLR -5 374 24 3 986 218 210 91 80 chr5 52686591 52686679 -99850580 - PB1D10 SINE Alu -27 90 2 3 986 200 237 0 17 chr5 52687422 52687482 -99849777 + T-rich Low_complexity Low_complexity 3 61 0 3 986 452 272 109 7 chr5 52687699 52687836 -99849423 - Lx8 LINE L1 -288 7185 7035 3 986 213 39 0 0 chr5 52688300 52688326 -99848933 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 3 986 1799 160 29 6 chr5 52688326 52688641 -99848618 - Lx LINE L1 -15 6639 6318 3 986 740 239 47 47 chr5 52689578 52689793 -99847466 - B3 SINE B2 0 216 2 3 123 9428 133 43 9 chr5 52689816 52691311 -99845948 + Lx6 LINE L1 33 2068 -3812 3 987 243 0 0 0 chr5 52691311 52691338 -99845921 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 987 9428 141 34 14 chr5 52691338 52692204 -99845055 + Lx6 LINE L1 2069 2947 -2933 3 987 7694 158 35 26 chr5 52692201 52693402 -99843857 + Lx6 LINE L1 4448 5670 -210 3 987 486 0 0 0 chr5 52693402 52693456 -99843803 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 987 1201 42 0 0 chr5 52693456 52693600 -99843659 - B1_Mus2 SINE Alu -2 145 2 3 987 7694 171 41 36 chr5 52693600 52693945 -99843314 + Lx6 LINE L1 5671 6015 -1445 3 987 180 0 0 0 chr5 52693945 52693965 -99843294 + (TGGA)n Simple_repeat Simple_repeat 4 23 0 3 987 5586 193 51 53 chr5 52693965 52694795 -99842464 + Lx6 LINE L1 6016 6844 -616 3 987 7576 121 60 7 chr5 52694794 52696025 -99841234 - MusHAL1 LINE L1 -355 2357 1062 3 987 2882 197 29 27 chr5 52696027 52696715 -99840544 - L1VL4 LINE L1 -4559 1318 628 3 987 299 189 19 14 chr5 52696910 52697000 -99840259 - B1_Mus2 SINE Alu 0 149 57 4 987 807 265 38 92 chr5 52697098 52697468 -99839791 - ORR1E LTR MaLR -9 350 1 4 987 462 300 80 0 chr5 52698228 52698378 -99838881 - RSINE1 SINE B4 0 165 4 4 987 604 224 128 6 chr5 52698467 52698647 -99838612 + MLT2D LTR ERVL 4 205 -209 4 987 1107 221 93 36 chr5 52698691 52699025 -99838234 - ORR1E LTR MaLR 0 359 7 4 987 502 229 73 8 chr5 52699107 52699230 -99838029 + B4A SINE B4 160 290 -2 4 987 405 0 0 0 chr5 52699418 52699463 -99837796 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 987 458 296 26 138 chr5 52699466 52699697 -99837562 + MLT2D LTR ERVL 206 410 -4 4 987 306 67 0 0 chr5 52701563 52701608 -99835651 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 987 377 280 118 7 chr5 52701621 52701765 -99835494 - B3A SINE B2 -38 160 1 4 987 842 261 156 3 chr5 52701817 52702143 -99835116 + MTEa LTR MaLR 1 376 -3 4 987 808 205 7 20 chr5 52702428 52702577 -99834682 - B1_Mur1 SINE Alu -1 148 2 4 987 267 287 131 65 chr5 52702580 52702639 -99834620 + MER58A DNA MER1_type 52 112 -112 4 987 2359 96 0 42 chr5 52702639 52702976 -99834283 - ORR1A2 LTR MaLR 0 327 5 4 987 267 287 131 65 chr5 52702976 52703069 -99834190 + MER58A DNA MER1_type 113 214 -10 4 987 855 250 85 16 chr5 52703872 52704120 -99833139 + MTEa LTR MaLR 6 270 -109 4 987 396 314 89 73 chr5 52704366 52704685 -99832574 - MTEa LTR MaLR -37 342 7 4 987 706 306 62 14 chr5 52706034 52706322 -99830937 + LTR53 LTR ERVL 2 303 -216 4 987 758 243 177 45 chr5 52706393 52706703 -99830556 - MTEa LTR MaLR -28 351 1 4 987 510 61 0 0 chr5 52707086 52707152 -99830107 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 987 1018 240 86 37 chr5 52707178 52707529 -99829730 - RMER13A LTR ERVK -395 465 98 4 987 2335 110 166 21 chr5 52708073 52708548 -99828711 - MTC-int LTR MaLR -712 546 3 4 987 283 299 119 46 chr5 52708551 52708622 -99828637 - RMER20B LTR ERVK -38 589 520 4 987 324 0 0 0 chr5 52708622 52708658 -99828601 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 987 283 299 119 46 chr5 52708658 52708737 -99828522 - RMER20B LTR ERVK -108 519 428 4 987 391 262 48 43 chr5 52708762 52708949 -99828310 - RMER20B LTR ERVK -310 317 130 4 987 2104 144 69 15 chr5 52709119 52709508 -99827751 - MTC LTR MaLR -10 411 2 4 987 181 333 0 0 chr5 52709605 52709686 -99827573 - L2a LINE L2 -365 3061 2981 4 987 1196 68 0 0 chr5 52710006 52710153 -99827106 - B1_Mus2 SINE Alu 0 147 1 4 987 245 270 8 20 chr5 52710281 52710389 -99826870 + MIRc SINE MIR 43 151 -117 4 987 501 200 67 0 chr5 52711269 52711374 -99825885 - PB1D10 SINE Alu -4 113 2 4 987 942 106 35 7 chr5 52711888 52712031 -99825228 + B1_Mus1 SINE Alu 1 147 -1 4 987 916 116 14 0 chr5 52712333 52712480 -99824779 + URR1A DNA MER1_type 78 226 0 4 987 659 280 110 38 chr5 52712826 52713253 -99824006 - Charlie4a DNA MER1_type -22 486 29 4 987 643 255 35 119 chr5 52713421 52713648 -99823611 + B3 SINE B2 1 208 -8 4 987 831 203 7 0 chr5 52713671 52713819 -99823440 + B3A SINE B2 2 150 -48 4 987 300 137 0 0 chr5 52713994 52714045 -99823214 - B3 SINE B2 -165 51 1 4 987 378 312 124 6 chr5 52714256 52714433 -99822826 + MER89 LTR ERV1 132 329 -230 4 987 369 0 0 0 chr5 52715906 52715947 -99821312 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 987 4177 31 0 0 chr5 52716076 52716555 -99820704 + L1Md_F3 LINE L1 6105 6583 -1 4 987 183 320 103 8 chr5 52716824 52716950 -99820309 + MIRb SINE MIR 55 192 -76 4 987 853 274 28 35 chr5 52717247 52717531 -99819728 + B4A SINE B4 1 282 -10 4 987 216 0 0 0 chr5 52717884 52717908 -99819351 + (ATG)n Simple_repeat Simple_repeat 3 26 0 4 987 300 27 0 0 chr5 52717908 52717945 -99819314 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 987 528 281 51 32 chr5 52717953 52718111 -99819148 - RSINE1 SINE B4 -4 161 1 4 987 199 143 0 58 chr5 52719678 52719730 -99817529 + GA-rich Low_complexity Low_complexity 1 49 0 4 987 421 100 0 0 chr5 52720442 52720502 -99816757 + URR1A DNA MER1_type 58 117 -109 4 987 276 338 83 19 chr5 52720574 52720731 -99816528 + MLT1L LTR MaLR 442 608 -2 4 987 339 78 0 0 chr5 52720768 52720819 -99816440 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 4 987 277 197 26 13 chr5 52720872 52720949 -99816310 + L1M4b LINE L1 1624 1701 -5633 4 987 1947 289 40 45 chr5 52721146 52721827 -99815432 + Lx8 LINE L1 6436 7112 -361 4 987 1184 232 46 28 chr5 52721832 52722155 -99815104 + RLTR14 LTR ERV1 54 382 0 4 987 1037 269 77 16 chr5 52722155 52722465 -99814794 + Lx8 LINE L1 7109 7437 -36 4 987 431 270 72 52 chr5 52722514 52722846 -99814413 + RLTR15 LTR ERVK 45 359 0 4 987 455 288 14 18 chr5 52723364 52723525 -99813734 + MLT1N2 LTR MaLR 432 665 -7 4 987 733 243 47 99 chr5 52724634 52724803 -99812456 + B3A SINE B2 2 166 -32 4 987 210 37 0 0 chr5 52724803 52724830 -99812429 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 987 471 243 47 99 chr5 52724830 52724852 -99812407 + B2_Mm2 SINE B2 160 182 -13 4 987 266 356 35 0 chr5 52725033 52725120 -99812139 + L3 LINE CR1 4187 4276 -213 4 987 7140 90 42 22 chr5 52725297 52726315 -99810944 + Lx LINE L1 5604 6642 -12 4 987 241 322 68 11 chr5 52726976 52727064 -99810195 - MER5A DNA MER1_type -2 187 95 4 987 223 261 43 14 chr5 52728006 52728076 -99809183 + MIRb SINE MIR 99 170 -98 4 987 473 245 0 56 chr5 52728077 52728185 -99809074 + B4A SINE B4 1 102 -190 4 987 1427 84 21 0 chr5 52728292 52728482 -99808777 + B2_Mm2 SINE B2 1 194 -1 4 987 207 0 0 0 chr5 52728541 52728564 -99808695 + (T)n Simple_repeat Simple_repeat 1 23 0 4 987 768 291 16 27 chr5 52728732 52728916 -99808343 + B4A SINE B4 106 287 -5 4 987 379 144 10 10 chr5 52728981 52729079 -99808180 + GA-rich Low_complexity Low_complexity 2 99 0 4 987 369 302 59 51 chr5 52729787 52729926 -99807333 - MLT1F LTR MaLR 0 595 450 4 987 3114 84 0 7 chr5 52729926 52730335 -99806924 + MTB_Mm LTR MaLR 2 407 0 4 987 369 329 91 107 chr5 52730335 52730704 -99806555 - MLT1F LTR MaLR -120 449 66 4 987 460 263 1 14 chr5 52730778 52730895 -99806364 + B3A SINE B2 51 165 -33 4 987 587 302 20 20 chr5 52730882 52730899 -99806360 - RSINE1 SINE B4 -12 153 137 4 987 324 0 0 0 chr5 52730899 52730935 -99806324 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 987 587 302 20 20 chr5 52730935 52731069 -99806190 - RSINE1 SINE B4 -29 136 3 4 987 722 300 40 79 chr5 52731080 52731384 -99805875 - MLT1F-int LTR MaLR -1113 296 5 4 987 555 285 136 53 chr5 52731388 52731866 -99805393 - MLT1F LTR MaLR 0 595 90 4 987 390 42 0 0 chr5 52731972 52732020 -99805239 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 987 309 269 119 14 chr5 52732711 52732854 -99804405 + MLT1B LTR MaLR 31 188 -202 4 987 337 308 57 19 chr5 52733219 52733325 -99803934 + PB1D10 SINE Alu 6 115 -2 4 987 474 208 57 111 chr5 52733493 52733681 -99803578 + MLT1B LTR MaLR 160 384 -6 4 987 233 282 14 0 chr5 52733691 52733762 -99803497 - L1MC4 LINE L1 -1081 6961 6890 4 987 366 232 20 40 chr5 52734358 52734457 -99802802 - U6 snRNA snRNA -3 104 8 4 987 1676 162 142 15 chr5 52734918 52735063 -99802196 + ORR1D1 LTR MaLR 1 163 -211 4 987 777 79 0 0 chr5 52735063 52735177 -99802082 + (TC)n Simple_repeat Simple_repeat 1 114 0 4 987 243 0 0 0 chr5 52735177 52735203 -99802056 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 987 1676 162 142 15 chr5 52735203 52735388 -99801871 + ORR1D1 LTR MaLR 164 373 -1 4 987 564 317 94 97 chr5 52735415 52735775 -99801484 + MT2A LTR ERVL 157 533 0 4 987 1503 271 91 14 chr5 52736876 52737370 -99799889 + RLTR20A2 LTR ERVK 47 578 0 4 987 29 28 0 0 chr5 52737764 52737800 -99799459 + AT_rich Low_complexity Low_complexity 1 36 0 4 987 1085 8 0 0 chr5 52737802 52737933 -99799326 - L1Md_A LINE L1 0 6582 6452 4 987 287 218 139 13 chr5 52738216 52738295 -99798964 + MLT2B4 LTR ERVL 1 89 -467 4 987 254 194 56 0 chr5 52738297 52738369 -99798890 + GA-rich Low_complexity Low_complexity 1 76 0 4 987 924 281 20 47 chr5 52738814 52739113 -99798146 + B4 SINE B4 2 292 0 4 987 598 203 67 15 chr5 52739185 52739320 -99797939 - ORR1D1 LTR MaLR 0 374 233 4 987 407 207 25 75 chr5 52739307 52739427 -99797832 - ORR1D1 LTR MaLR -252 122 9 4 987 218 224 86 0 chr5 52739595 52739653 -99797606 + MIR SINE MIR 183 245 -17 4 987 678 248 109 58 chr5 52739775 52740032 -99797227 - B4A SINE B4 -20 272 3 4 987 270 295 0 50 chr5 52740086 52740186 -99797073 - MLT1K LTR MaLR -7 588 494 4 987 507 98 0 288 chr5 52740467 52740647 -99796612 - L1_Mur1 LINE L1 -1299 4847 4695 4 987 1359 67 0 0 chr5 52741219 52741398 -99795861 + (CACCAT)n Simple_repeat Simple_repeat 2 180 0 4 987 270 230 40 13 chr5 52742206 52742281 -99794978 - MLT1K LTR MaLR -533 77 1 4 987 423 0 0 0 chr5 52742637 52742684 -99794575 + (CATA)n Simple_repeat Simple_repeat 1 47 0 4 987 190 308 62 100 chr5 52744118 52744248 -99793011 - L3 LINE CR1 -3504 985 861 4 987 276 53 0 0 chr5 52744802 52744840 -99792419 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 987 343 307 29 14 chr5 52745253 52745392 -99791867 + L3 LINE CR1 4291 4431 -58 4 987 377 325 121 40 chr5 52745466 52745698 -99791561 + MIRb SINE MIR 9 263 -5 4 987 1206 48 0 0 chr5 52746210 52746356 -99790903 + B1_Mus1 SINE Alu 3 148 0 4 987 258 247 0 0 chr5 52746477 52746554 -99790705 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 987 645 326 42 5 chr5 52746573 52746789 -99790470 - B4A SINE B4 -6 286 63 4 987 577 296 44 58 chr5 52746955 52747249 -99790010 - L1MB5 LINE L1 -7 6167 5878 4 987 429 166 173 21 chr5 52747399 52747513 -99789746 + B1_Mur1 SINE Alu 31 149 0 4 987 262 322 128 11 chr5 52747532 52747626 -99789633 - PB1D7 SINE Alu -13 107 3 4 987 249 309 49 12 chr5 52747626 52747658 -99789601 - B4 SINE B4 -205 87 53 4 987 1440 244 70 10 chr5 52747698 52748099 -99789160 - L1MA6 LINE L1 -6 6294 5870 4 987 578 290 55 0 chr5 52748098 52748315 -99788944 - L1MB5 LINE L1 -346 5828 5600 4 987 324 0 0 0 chr5 52748340 52748376 -99788883 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 4 987 238 260 0 0 chr5 52748540 52748590 -99788669 - MER63D DNA AcHobo 0 1061 1012 5 987 273 323 94 0 chr5 52748583 52748679 -99788580 - MER63D DNA AcHobo -696 365 261 5 987 466 308 32 16 chr5 52748717 52748905 -99788354 - L1MC4a LINE L1 -2027 6028 5838 5 987 227 362 73 24 chr5 52749371 52749535 -99787724 + MER5B DNA MER1_type 1 172 -6 5 987 364 306 95 65 chr5 52749573 52749741 -99787518 - MLT2D LTR ERVL -8 552 380 5 987 421 256 257 14 chr5 52749744 52749966 -99787293 + B4A SINE B4 2 277 -15 5 987 208 175 35 17 chr5 52749972 52750030 -99787229 + CT-rich Low_complexity Low_complexity 3 61 0 5 987 235 288 60 36 chr5 52750041 52750124 -99787135 - L1ME2 LINE L1 -165 5999 5915 5 987 310 361 91 24 chr5 52750175 52750385 -99786874 - L1MC4a LINE L1 -2810 3509 3286 5 987 249 309 132 21 chr5 52750475 52750743 -99786516 - L1MC4a LINE L1 -3120 3199 2894 5 987 275 270 45 38 chr5 52751072 52751193 -99786066 - L1MC4a LINE L1 -3840 2479 2360 5 987 258 200 29 44 chr5 52752473 52752541 -99784718 - ID4 SINE ID -14 69 3 5 987 338 321 56 9 chr5 52752568 52752675 -99784584 - PB1D10 SINE Alu 0 117 6 5 987 238 291 67 76 chr5 52752683 52752790 -99784469 + MIRb SINE MIR 58 163 -113 5 987 1258 88 66 0 chr5 52753320 52753502 -99783757 + B2_Mm2 SINE B2 1 194 -1 5 987 969 240 40 0 chr5 52754161 52754361 -99782898 + ID_B1 SINE B4 17 224 0 5 987 534 197 7 14 chr5 52754915 52755059 -99782200 + GA-rich Low_complexity Low_complexity 1 143 0 5 987 180 0 0 0 chr5 52755786 52755806 -99781453 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 987 443 172 69 0 chr5 52756339 52756426 -99780833 + B4 SINE B4 1 93 -199 5 987 441 0 0 0 chr5 52756483 52756532 -99780727 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 987 199 122 20 20 chr5 52756567 52756617 -99780642 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 987 192 281 48 24 chr5 52756683 52756767 -99780492 - MIRb SINE MIR -68 200 115 5 987 211 345 97 0 chr5 52756807 52756920 -99780339 - MIR SINE MIR -138 124 1 5 987 701 301 121 43 chr5 52757191 52757496 -99779763 + MER2 DNA MER2_type 2 330 -15 5 987 703 265 92 41 chr5 52757655 52757908 -99779351 + B4A SINE B4 3 271 -21 5 987 381 22 0 0 chr5 52757908 52757954 -99779305 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 987 703 265 92 41 chr5 52757954 52757971 -99779288 + B4A SINE B4 272 287 -5 5 987 297 0 0 0 chr5 52758864 52758897 -99778362 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 987 326 265 236 35 chr5 52761610 52761810 -99775449 + MIRc SINE MIR 6 249 -19 5 987 191 288 15 15 chr5 52761863 52761930 -99775329 + L3 LINE CR1 4312 4378 -111 5 987 872 162 0 0 chr5 52761945 52762081 -99775178 - B1_Mus1 SINE Alu -12 136 1 5 987 451 270 97 45 chr5 52762986 52763141 -99774118 - RSINE1 SINE B4 0 165 3 5 987 257 271 0 0 chr5 52763142 52763201 -99774058 + CT-rich Low_complexity Low_complexity 3 61 0 5 987 335 331 148 12 chr5 52763287 52763544 -99773715 - B4A SINE B4 0 292 1 5 987 883 227 18 80 chr5 52763689 52763914 -99773345 - B4 SINE B4 0 292 82 5 987 230 116 23 0 chr5 52765080 52765123 -99772136 + (CTAA)n Simple_repeat Simple_repeat 1 44 0 5 987 256 283 151 84 chr5 52765469 52765635 -99771624 + MLT1L LTR MaLR 194 370 -240 5 987 426 279 115 60 chr5 52768141 52768324 -99768935 + MamRep488 DNA hAT 16 208 -11 5 987 468 0 0 0 chr5 52769733 52769785 -99767474 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 987 377 206 0 0 chr5 52769797 52769865 -99767394 - ID4_ SINE ID -14 69 2 5 987 2034 129 144 40 chr5 52769916 52770086 -99767173 + RLTR11B LTR ERVK 8 231 -222 5 987 609 14 0 0 chr5 52770086 52770156 -99767103 + (GA)n Simple_repeat Simple_repeat 1 70 0 5 987 2034 129 144 40 chr5 52770156 52770389 -99766870 + RLTR11B LTR ERVK 232 452 -1 5 987 381 296 125 42 chr5 52770805 52771188 -99766071 - MLT1D LTR MaLR -22 483 51 5 987 317 362 20 7 chr5 52771392 52771545 -99765714 + Helitron1Na_Mam RC Helitron 739 893 -169 5 987 705 24 0 0 chr5 52771628 52771711 -99765548 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 5 987 326 274 17 17 chr5 52771829 52771948 -99765311 + MER5A1 DNA MER1_type 48 166 0 5 987 191 204 0 20 chr5 52773140 52773190 -99764069 + CT-rich Low_complexity Low_complexity 1 49 0 5 987 228 67 0 0 chr5 52775090 52775120 -99762139 + (A)n Simple_repeat Simple_repeat 1 30 0 5 987 4352 163 61 52 chr5 52775257 52776202 -99761057 + RMER17B LTR ERVK 5 958 0 5 987 1369 224 73 43 chr5 52776523 52776882 -99760377 + MTE2a LTR MaLR 1 370 -9 5 987 2883 92 0 43 chr5 52776882 52777304 -99759955 + L1Md_F2 LINE L1 6178 6581 -1 5 987 209 307 92 80 chr5 52777497 52777529 -99759730 + MIR3 SINE MIR 1 27 -181 5 987 282 56 0 0 chr5 52777529 52777565 -99759694 + (CAG)n Simple_repeat Simple_repeat 1 36 0 5 987 228 271 78 71 chr5 52777565 52777695 -99759564 + MIRc SINE MIR 28 164 -44 5 987 450 0 0 0 chr5 52779693 52779743 -99757516 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 987 337 274 417 6 chr5 52779825 52780018 -99757241 - B4A SINE B4 -20 272 1 5 987 585 285 14 28 chr5 52780343 52780556 -99756703 + ID_B1 SINE B4 1 210 -14 5 987 180 0 0 0 chr5 52780558 52780578 -99756681 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 987 2175 106 12 64 chr5 52780982 52781326 -99755933 + ORR1A3 LTR MaLR 1 326 0 5 987 747 50 0 0 chr5 52783535 52783635 -99753624 + (CA)n Simple_repeat Simple_repeat 2 101 0 5 987 339 316 104 28 chr5 52784179 52784361 -99752898 - MARNA DNA Mariner -71 515 320 5 987 234 258 0 57 chr5 52784450 52784520 -99752739 + L2a LINE L2 3348 3413 -13 5 987 620 280 8 0 chr5 52784693 52784825 -99752434 + RSINE1 SINE B4 14 146 -19 5 987 224 344 9 66 chr5 52785834 52785940 -99751319 - MIR SINE MIR -146 116 17 5 987 319 308 45 44 chr5 52786591 52786763 -99750496 - MIRc SINE MIR -35 233 48 5 987 3612 40 2 0 chr5 52787658 52788186 -99749073 + L1Md_F2 LINE L1 6141 6582 0 5 987 2132 146 3 36 chr5 52790303 52790546 -99746713 - ORR1A2 LTR MaLR -4 323 80 5 987 1158 52 0 0 chr5 52790546 52790681 -99746578 + B1_Mus2 SINE Alu 2 136 -11 5 987 183 42 0 0 chr5 52790684 52790708 -99746551 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 987 2132 146 3 36 chr5 52790708 52790794 -99746465 - ORR1A2 LTR MaLR -248 79 1 5 987 232 98 19 56 chr5 52791187 52791241 -99746018 + C-rich Low_complexity Low_complexity 1 52 0 5 987 289 274 22 42 chr5 52791684 52791783 -99745476 - BC1_Mm scRNA scRNA -56 96 3 5 987 252 276 12 95 chr5 52791894 52791978 -99745281 - MIRc SINE MIR -105 163 87 5 987 1532 53 0 21 chr5 52792208 52792400 -99744859 - B2_Mm1a SINE B2 -4 189 2 5 987 369 195 12 61 chr5 52792939 52793021 -99744238 - B1_Mur1 SINE Alu -5 144 67 5 987 372 254 14 0 chr5 52793035 52793106 -99744153 - B4A SINE B4 -207 85 14 5 987 1104 106 0 0 chr5 52796076 52796246 -99741013 + (CA)n Simple_repeat Simple_repeat 1 170 0 5 987 431 314 81 20 chr5 52798696 52798949 -99738310 - L1MA8 LINE L1 -82 6218 5954 5 987 1198 220 126 46 chr5 52798949 52799302 -99737957 - MTD LTR MaLR 0 419 13 5 987 438 103 0 0 chr5 52799302 52799380 -99737879 + (A)n Simple_repeat Simple_repeat 1 78 0 5 987 834 272 112 60 chr5 52799409 52799812 -99737447 - L1MA8 LINE L1 -349 5942 5519 5 987 685 328 35 29 chr5 52799825 52800139 -99737120 - MER82 DNA MER2_type -310 343 28 5 987 219 380 0 0 chr5 52801280 52801351 -99735908 + (CACCAT)n Simple_repeat Simple_repeat 5 75 0 5 987 237 108 0 0 chr5 52801353 52801390 -99735869 + (CAT)n Simple_repeat Simple_repeat 1 37 0 5 987 189 0 0 0 chr5 52801765 52801786 -99735473 + (T)n Simple_repeat Simple_repeat 1 21 0 5 987 229 232 113 28 chr5 52801995 52802066 -99735193 + MIRb SINE MIR 53 129 -139 5 987 460 212 7 132 chr5 52802106 52802148 -99735111 + MT2B LTR ERVL 132 154 -447 5 987 925 152 7 0 chr5 52802148 52802293 -99734966 + B1_Mus2 SINE Alu 2 147 0 5 987 209 305 40 53 chr5 52803569 52803644 -99733615 + L2a LINE L2 3225 3333 -93 5 987 22 0 0 0 chr5 52803869 52803891 -99733368 + AT_rich Low_complexity Low_complexity 1 22 0 5 987 228 290 52 41 chr5 52804833 52804930 -99732329 - MIR SINE MIR -119 143 46 5 987 2390 171 41 17 chr5 52805040 52805451 -99731808 + MTC LTR MaLR 1 421 0 5 987 865 228 41 0 chr5 52805843 52806014 -99731245 + B4A SINE B4 111 288 -4 5 987 261 0 0 0 chr5 52806076 52806105 -99731154 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 987 387 0 0 0 chr5 52807483 52807526 -99729733 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 987 306 50 0 0 chr5 52807751 52807791 -99729468 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 5 987 297 0 0 0 chr5 52807961 52807994 -99729265 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 987 625 316 24 24 chr5 52808074 52808363 -99728896 + B4A SINE B4 4 292 0 5 987 531 250 92 15 chr5 52808872 52809002 -99728257 + B1_Mur1 SINE Alu 9 148 -1 5 987 31 26 0 0 chr5 52809016 52809054 -99728205 + AT_rich Low_complexity Low_complexity 1 38 0 5 987 606 347 22 33 chr5 52809123 52809397 -99727862 - B4A SINE B4 -20 272 2 5 987 255 271 0 28 chr5 52809407 52809479 -99727780 - MLT1A1 LTR MaLR -19 389 320 5 987 2394 156 5 52 chr5 52809497 52809922 -99727337 + MTB_Mm LTR MaLR 3 407 0 5 987 1778 232 116 14 chr5 52810157 52810598 -99726661 - Lx6 LINE L1 -26 7434 6949 5 987 527 267 102 30 chr5 52810671 52810868 -99726391 + MTE2b LTR MaLR 1 211 -168 5 987 942 264 55 12 chr5 52812415 52812707 -99724552 + B4A SINE B4 34 291 -1 5 987 539 276 35 0 chr5 52812723 52812980 -99724279 + (CA)n Simple_repeat Simple_repeat 1 266 0 5 987 297 109 0 0 chr5 52813128 52813174 -99724085 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 987 944 281 35 42 chr5 52813176 52813297 -99723962 - B4A SINE B4 -4 288 170 5 987 1132 142 106 14 chr5 52813297 52813504 -99723755 + URR1A DNA MER1_type 1 226 0 6 987 944 281 35 42 chr5 52813504 52813668 -99723591 - B4A SINE B4 -123 169 5 5 987 576 81 0 0 chr5 52813907 52813994 -99723265 + (TG)n Simple_repeat Simple_repeat 2 88 0 6 987 359 316 95 82 chr5 52814681 52814912 -99722347 + L2a LINE L2 3101 3334 -92 6 987 328 255 155 10 chr5 52815579 52815682 -99721577 - L2a LINE L2 -1 3425 3308 6 987 306 257 14 0 chr5 52816452 52816526 -99720733 - Charlie10 DNA MER1_type -54 2768 2694 6 987 258 343 28 38 chr5 52816561 52816667 -99720592 - Charlie10 DNA MER1_type -2712 110 6 6 987 651 209 9 0 chr5 52817673 52817788 -99719471 + RSINE1 SINE B4 48 163 -2 6 987 212 304 0 0 chr5 52817942 52817998 -99719261 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 987 2015 145 124 16 chr5 52818131 52818502 -99718757 + MTD LTR MaLR 1 411 -8 6 987 631 243 67 56 chr5 52818791 52818970 -99718289 + B3A SINE B2 2 182 -16 6 987 383 238 2 116 chr5 52818992 52819148 -99718111 - Lx6 LINE L1 -17 7443 7320 6 987 735 257 93 8 chr5 52819169 52819428 -99717831 + B4 SINE B4 2 282 -10 6 987 195 69 0 0 chr5 52819431 52819460 -99717799 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 987 378 0 0 0 chr5 52819461 52819503 -99717756 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 987 348 43 0 0 chr5 52819503 52819548 -99717711 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 987 1456 212 80 25 chr5 52821492 52821854 -99715405 + RLTR14 LTR ERV1 1 382 0 6 988 689 195 103 20 chr5 52822142 52822323 -99714936 + MT2A LTR ERVL 1 264 -229 6 988 376 192 0 82 chr5 52822304 52822389 -99714870 + MT2A LTR ERVL 387 464 -69 6 988 288 231 31 0 chr5 52822468 52822533 -99714726 + MT2A LTR ERVL 535 601 0 6 988 273 289 9 71 chr5 52822562 52822674 -99714585 - MIR SINE MIR -81 181 77 6 988 21 0 0 0 chr5 52823090 52823111 -99714148 + AT_rich Low_complexity Low_complexity 1 21 0 6 988 367 252 18 104 chr5 52824646 52824810 -99712449 - MER53 DNA hAT -30 163 14 6 988 681 124 0 0 chr5 52825549 52825678 -99711581 + (TG)n Simple_repeat Simple_repeat 1 129 0 6 988 228 172 0 0 chr5 52825678 52825736 -99711523 + GA-rich Low_complexity Low_complexity 2 59 0 6 988 387 294 0 0 chr5 52827337 52827500 -99709759 + (CA)n Simple_repeat Simple_repeat 2 164 0 6 988 436 333 11 0 chr5 52827523 52827697 -99709562 + (CA)n Simple_repeat Simple_repeat 1 176 0 6 988 902 191 42 9 chr5 52827699 52827911 -99709348 + Lx4B LINE L1 6823 7041 -17 6 988 288 0 0 0 chr5 52828202 52828234 -99709025 + (TTA)n Simple_repeat Simple_repeat 3 34 0 6 988 425 287 0 0 chr5 52828235 52828343 -99708916 - PB1D10 SINE Alu -4 113 6 6 988 1450 182 185 178 chr5 52828778 52828862 -99708397 + MT2A LTR ERVL 1 81 -452 6 988 459 0 0 0 chr5 52828862 52828913 -99708346 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 988 1450 182 185 178 chr5 52828913 52829006 -99708253 + MT2A LTR ERVL 82 94 -439 6 988 748 221 7 0 chr5 52829006 52829151 -99708108 - B1_Mus1 SINE Alu -2 146 1 6 988 1450 182 185 178 chr5 52829151 52829455 -99707804 + MT2A LTR ERVL 95 487 -46 6 988 753 0 31 0 chr5 52829455 52829552 -99707707 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 6 988 1450 182 185 178 chr5 52829552 52829597 -99707662 + MT2A LTR ERVL 488 532 -1 6 988 412 248 133 0 chr5 52830108 52830213 -99707046 - ID_B1 SINE B4 -6 218 100 6 988 400 289 57 32 chr5 52830703 52830860 -99706399 + RSINE1 SINE B4 5 165 0 6 988 22 0 0 0 chr5 52830971 52830993 -99706266 + AT_rich Low_complexity Low_complexity 1 22 0 6 988 24 0 0 0 chr5 52831015 52831039 -99706220 + AT_rich Low_complexity Low_complexity 1 24 0 6 988 180 0 0 0 chr5 52831106 52831126 -99706133 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 988 241 289 191 20 chr5 52832691 52832843 -99704416 + Lx8 LINE L1 6970 7147 -326 6 988 321 234 36 36 chr5 52832841 52832952 -99704307 + Lx8 LINE L1 7301 7411 -62 6 988 232 227 59 13 chr5 52833002 52833154 -99704105 + (TTATA)n Simple_repeat Simple_repeat 5 163 0 6 988 990 200 145 12 chr5 52833473 52833721 -99703538 + MTE2a LTR MaLR 96 376 -3 6 988 186 368 67 33 chr5 52833791 52833881 -99703378 + L2b LINE L2 3265 3357 -18 6 988 1789 240 52 136 chr5 52833962 52834571 -99702688 + RLTR1D LTR ERV1 48 605 0 6 988 216 317 0 0 chr5 52834759 52834819 -99702440 - MIR3 SINE MIR -35 173 114 6 988 363 338 123 18 chr5 52835080 52835300 -99701959 + MIR SINE MIR 1 243 -25 6 988 259 58 0 71 chr5 52836249 52836305 -99700954 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 6 988 197 269 86 37 chr5 52836476 52836557 -99700702 - MIRc SINE MIR -114 154 70 6 988 331 332 126 35 chr5 52837854 52838085 -99699174 + ORR1E LTR MaLR 4 255 -104 6 988 314 235 71 0 chr5 52838472 52838557 -99698702 - RSINE1 SINE B4 -72 93 3 6 988 378 0 0 0 chr5 52838716 52838758 -99698501 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 988 249 323 0 0 chr5 52838884 52838949 -99698310 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 988 910 224 0 65 chr5 52839317 52839532 -99697727 - RMER30 DNA MER1_type 0 202 2 6 988 243 140 0 180 chr5 52840966 52840979 -99696280 + ID SINE ID 77 78 -146 6 988 301 240 72 99 chr5 52840979 52841090 -99696169 + PB1D10 SINE Alu 3 110 -39 6 988 248 175 25 0 chr5 52841096 52841136 -99696123 + ID4_ SINE ID 2 42 -41 6 988 600 27 0 0 chr5 52841148 52841222 -99696037 + (GA)n Simple_repeat Simple_repeat 1 74 0 6 988 279 0 0 0 chr5 52841528 52841559 -99695700 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 988 197 33 33 0 chr5 52841717 52841747 -99695512 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 6 988 367 331 106 44 chr5 52843243 52843492 -99693767 + MIRb SINE MIR 10 268 0 6 988 707 199 118 0 chr5 52843562 52843723 -99693536 - B3A SINE B2 -18 180 1 6 988 688 281 75 20 chr5 52844309 52844509 -99692750 + B3 SINE B2 6 216 0 6 988 814 155 45 99 chr5 52844588 52844797 -99692462 - Lx4B LINE L1 -4 7054 6784 6 988 1156 215 0 0 chr5 52845104 52845313 -99691946 - B3 SINE B2 -7 209 1 6 988 697 277 5 46 chr5 52846846 52847043 -99690216 + B3A SINE B2 5 193 -5 6 988 1509 149 132 15 chr5 52849306 52849409 -99687850 - ORR1C2 LTR MaLR -79 305 198 6 988 201 39 0 0 chr5 52849409 52849435 -99687824 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 988 1509 149 132 15 chr5 52849435 52849604 -99687655 - ORR1C2 LTR MaLR -187 197 2 6 988 366 341 93 43 chr5 52850003 52850260 -99686999 - ORR1E LTR MaLR -17 342 73 6 988 276 246 125 78 chr5 52850287 52850415 -99686844 - MLT1A1 LTR MaLR -270 138 5 6 988 260 291 27 184 chr5 52850541 52850726 -99686533 + RMER15 LTR ERVL 4 159 -416 6 988 357 319 103 7 chr5 52850726 52850974 -99686285 + RMER15 LTR ERVL 275 575 0 6 988 394 277 89 55 chr5 52851777 52852014 -99685245 + RLTR42-int LTR ERVK 1156 1400 -4122 6 988 1218 145 45 10 chr5 52852946 52853148 -99684111 + URR1B DNA MER1_type 17 225 0 6 988 246 316 180 5 chr5 52853773 52853967 -99683292 - L1ME1 LINE L1 -25 6154 5927 6 988 6596 98 15 25 chr5 52853982 52854979 -99682280 + L1Md_A LINE L1 5595 6581 -1 6 988 791 278 47 70 chr5 52855011 52855309 -99681950 + B4A SINE B4 2 292 0 6 988 300 196 0 53 chr5 52855312 52855501 -99681758 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 988 222 186 0 33 chr5 52855515 52855576 -99681683 + (CAGAGA)n Simple_repeat Simple_repeat 6 64 0 6 988 948 272 61 8 chr5 52855580 52856034 -99681225 - L1ME1 LINE L1 -597 5582 5101 6 988 464 350 29 93 chr5 52856062 52856453 -99680806 + MLT1J2 LTR MaLR 45 454 -58 6 988 286 311 130 22 chr5 52856617 52856657 -99680602 + B4 SINE B4 41 95 -197 6 988 534 221 58 4 chr5 52856657 52856774 -99680485 + B1_Mur2 SINE Alu 1 119 -1 6 988 224 329 55 41 chr5 52857020 52857093 -99680166 + ID_B1 SINE B4 82 155 -69 6 988 608 48 0 24 chr5 52857105 52857190 -99680069 + (GGGA)n Simple_repeat Simple_repeat 2 84 0 6 988 252 0 0 0 chr5 52857190 52857218 -99680041 + (CAGAGA)n Simple_repeat Simple_repeat 1 28 0 6 988 182 267 0 62 chr5 52857256 52857304 -99679955 + MIR SINE MIR 83 127 -81 6 988 469 296 101 58 chr5 52857428 52857812 -99679447 - MLT1C LTR MaLR -13 454 1 6 988 1705 137 146 19 chr5 52857920 52858097 -99679162 + RMER17C LTR ERVK 1 187 -223 6 988 609 52 0 0 chr5 52858097 52858174 -99679085 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 988 1705 137 146 19 chr5 52858174 52858360 -99678899 + RMER17C LTR ERVK 188 409 -1 6 988 817 268 123 36 chr5 52858581 52858914 -99678345 + MTEb LTR MaLR 18 379 0 6 988 228 284 54 0 chr5 52859606 52859680 -99677579 - MLT1C LTR MaLR -198 269 192 6 988 3374 46 2 2 chr5 52859701 52860097 -99677162 - MTA_Mm LTR MaLR 0 396 1 6 988 315 337 60 27 chr5 52860108 52860291 -99676968 - MLT1C LTR MaLR -293 212 24 6 988 212 383 12 0 chr5 52860405 52860486 -99676773 - L2c LINE L2 -42 3345 3264 6 988 332 311 9 0 chr5 52860514 52860620 -99676639 + MIRb SINE MIR 29 135 -133 6 988 415 237 0 102 chr5 52861354 52861374 -99675885 - PB1D10 SINE Alu -1 116 3 6 988 496 198 0 56 chr5 52861374 52861481 -99675778 - ID_B1 SINE B4 -40 184 84 6 988 27 29 0 0 chr5 52862700 52862734 -99674525 + GC_rich Low_complexity Low_complexity 1 34 0 6 988 201 278 152 25 chr5 52863081 52863199 -99674060 + L2b LINE L2 3243 3375 0 6 988 498 305 168 64 chr5 52863391 52863854 -99673405 + Lx7 LINE L1 6962 7472 -1 6 988 995 157 342 7 chr5 52864691 52864966 -99672293 + ORR1B2 LTR MaLR 1 367 0 6 988 209 279 0 0 chr5 52866242 52866284 -99670975 + T-rich Low_complexity Low_complexity 20 61 0 6 988 1205 68 0 0 chr5 52866284 52866431 -99670828 - B1_Mm SINE Alu 0 147 1 6 988 209 279 0 0 chr5 52866431 52866449 -99670810 + T-rich Low_complexity Low_complexity 2 19 0 6 988 860 28 0 9 chr5 52866701 52866809 -99670450 + (GAA)n Simple_repeat Simple_repeat 1 107 0 6 988 785 40 10 0 chr5 52866914 52867015 -99670244 + (GAGAA)n Simple_repeat Simple_repeat 4 105 0 6 988 277 308 35 103 chr5 52868869 52868955 -99668304 - LTR84b LTR ERVL -11 750 663 6 988 262 304 25 0 chr5 52868955 52869034 -99668225 + ID4_ SINE ID 2 82 -1 6 988 277 308 35 103 chr5 52869034 52869092 -99668167 - LTR84b LTR ERVL -99 662 616 6 988 639 229 123 15 chr5 52869107 52869278 -99667981 - B3 SINE B2 0 216 24 6 988 599 177 196 41 chr5 52869278 52869472 -99667787 + URR1B DNA MER1_type 2 225 0 7 988 639 229 123 15 chr5 52869472 52869495 -99667764 - B3 SINE B2 -193 23 1 6 988 1746 153 97 61 chr5 52869639 52869981 -99667278 + ORR1B1 LTR MaLR 41 394 0 7 988 255 335 125 0 chr5 52870029 52870181 -99667078 - LTR84b LTR ERVL -345 416 246 6 988 38 22 0 0 chr5 52870245 52870290 -99666969 + AT_rich Low_complexity Low_complexity 1 45 0 7 988 1363 216 139 6 chr5 52870440 52870771 -99666488 + MTD LTR MaLR 1 375 -44 7 988 720 255 94 32 chr5 52870786 52871094 -99666165 - RLTR15 LTR ERVK -32 327 1 7 988 273 135 37 37 chr5 52871094 52871148 -99666111 + MTD LTR MaLR 361 414 -7 7 988 1414 103 0 0 chr5 52871151 52871345 -99665914 + B2_Mm2 SINE B2 1 194 -1 7 988 210 71 0 0 chr5 52871354 52871382 -99665877 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 7 988 188 272 213 21 chr5 52871444 52871538 -99665721 - MIRm SINE MIR -2 274 163 7 988 314 288 0 12 chr5 52871657 52871738 -99665521 + B4 SINE B4 1 80 -212 7 988 22 35 0 0 chr5 52871745 52871774 -99665485 + AT_rich Low_complexity Low_complexity 1 29 0 7 988 796 275 0 0 chr5 52871787 52871969 -99665290 + B3A SINE B2 1 182 -16 7 988 629 303 50 84 chr5 52872008 52872246 -99665013 + B4 SINE B4 63 292 0 7 988 1012 259 35 64 chr5 52872491 52872536 -99664723 - ORR1D2 LTR MaLR 0 370 325 7 988 1530 208 67 43 chr5 52872536 52872908 -99664351 - ORR1C2 LTR MaLR 0 384 4 7 988 1012 259 35 64 chr5 52872908 52873175 -99664084 - ORR1D2 LTR MaLR -46 324 67 7 988 305 296 43 94 chr5 52873340 52873478 -99663781 - ORR1E LTR MaLR -154 205 75 7 988 2385 166 12 54 chr5 52873645 52874071 -99663188 + MTC LTR MaLR 14 421 0 7 988 1002 285 87 41 chr5 52874608 52874977 -99662282 - MLT1B LTR MaLR 0 390 5 7 988 229 323 40 11 chr5 52875930 52876063 -99661196 - L2a LINE L2 -9 3417 3225 7 988 421 293 167 29 chr5 52876551 52876755 -99660504 + MLT1G3 LTR MaLR 363 594 -1 7 988 298 297 57 33 chr5 52877234 52877356 -99659903 - MLT1B-int LTR MaLR -46 1443 1319 7 988 285 313 89 35 chr5 52877422 52877591 -99659668 - MLT1B-int LTR MaLR -428 981 804 7 988 279 0 0 0 chr5 52877628 52877659 -99659600 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 7 988 811 21 0 0 chr5 52877659 52877755 -99659504 - B1_Mus2 SINE Alu -10 137 42 7 988 269 168 112 56 chr5 52877692 52877799 -99659460 - RLTR25B LTR ERVK -519 509 397 7 988 493 167 0 0 chr5 52877801 52877903 -99659356 + CT-rich Low_complexity Low_complexity 79 180 0 7 988 394 102 0 33 chr5 52877903 52877964 -99659295 - B1_Mus1 SINE Alu -88 60 2 7 988 245 352 114 52 chr5 52878068 52878278 -99658981 - MLT1B-int LTR MaLR -690 799 577 7 988 256 297 164 0 chr5 52878437 52878565 -99658694 - MLT1B-int LTR MaLR -1130 359 211 7 988 689 318 138 72 chr5 52878781 52879296 -99657963 - MLT1B LTR MaLR -46 549 1 7 988 321 26 0 0 chr5 52879816 52879854 -99657405 + (TA)n Simple_repeat Simple_repeat 2 39 0 7 988 473 131 0 12 chr5 52879855 52879940 -99657319 + (TCCC)n Simple_repeat Simple_repeat 2 85 0 7 988 2437 141 46 15 chr5 52880017 52880412 -99656847 + MTB_Mm LTR MaLR 1 407 0 7 988 459 0 0 0 chr5 52880418 52880469 -99656790 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 988 306 0 0 0 chr5 52880469 52880502 -99656757 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 988 195 42 0 0 chr5 52880502 52880526 -99656733 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 988 218 56 0 27 chr5 52880547 52880584 -99656675 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 988 246 225 25 83 chr5 52881357 52881444 -99655815 + MTE2a LTR MaLR 4 80 -328 7 988 270 242 0 31 chr5 52881683 52881747 -99655512 + MTE2a LTR MaLR 278 339 -40 7 988 412 201 19 45 chr5 52883431 52883587 -99653672 + (CATATA)n Simple_repeat Simple_repeat 4 155 0 7 988 361 247 124 98 chr5 52884135 52884328 -99652931 - B3A SINE B2 0 198 1 7 988 402 209 15 37 chr5 52884357 52884491 -99652768 + (CA)n Simple_repeat Simple_repeat 2 132 0 7 988 1044 245 113 15 chr5 52884842 52885169 -99652090 + ORR1E LTR MaLR 1 359 0 7 988 342 0 0 0 chr5 52885760 52885798 -99651461 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 988 186 304 53 21 chr5 52886215 52886309 -99650950 - MIRb SINE MIR -58 210 114 7 988 180 77 0 0 chr5 52887243 52887269 -99649990 + (G)n Simple_repeat Simple_repeat 1 26 0 7 988 296 273 39 13 chr5 52887678 52887756 -99649503 + ID4_ SINE ID 2 81 -2 7 988 198 0 0 0 chr5 52887835 52887857 -99649402 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 988 943 231 33 0 chr5 52887857 52888039 -99649220 - B3 SINE B2 -28 188 1 7 988 249 365 102 8 chr5 52888122 52888249 -99649010 - L2a LINE L2 0 3426 3288 7 988 268 305 61 0 chr5 52888346 52888428 -99648831 - MLT1J2 LTR MaLR 0 489 403 7 988 280 224 35 0 chr5 52888423 52888481 -99648778 - MLT1J2 LTR MaLR -308 140 81 7 988 587 319 58 94 chr5 52888664 52889045 -99648214 - MTEa LTR MaLR -11 368 2 7 988 245 260 0 0 chr5 52889944 52889994 -99647265 - 5S rRNA rRNA -67 54 5 7 988 996 322 43 18 chr5 52889997 52890392 -99646867 + MLT1C LTR MaLR 63 467 0 7 988 245 233 0 0 chr5 52890400 52890443 -99646816 - MER5A DNA MER1_type -146 43 1 7 988 243 247 120 30 chr5 52890849 52890949 -99646310 + MLT1N2 LTR MaLR 431 539 -23 7 988 338 333 30 114 chr5 52891043 52891307 -99645952 + MLT1A1 LTR MaLR 1 242 -166 7 988 367 226 48 0 chr5 52891527 52891611 -99645648 + B3A SINE B2 2 89 -109 7 988 324 0 0 0 chr5 52891611 52891647 -99645612 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 988 864 251 121 19 chr5 52892907 52893163 -99644096 - B4A SINE B4 -8 284 3 7 988 2317 289 102 25 chr5 52893184 52893964 -99643295 - Lx8 LINE L1 -450 7023 6176 7 988 612 0 0 0 chr5 52893964 52894032 -99643227 + (GA)n Simple_repeat Simple_repeat 1 68 0 7 988 2317 289 102 25 chr5 52894032 52894168 -99643091 - Lx8 LINE L1 -1298 6175 6036 7 988 1892 112 52 93 chr5 52894168 52894511 -99642748 + ORR1A4 LTR MaLR 1 329 0 7 988 1606 179 83 104 chr5 52894560 52894983 -99642276 + MTD LTR MaLR 1 414 -5 7 988 1046 304 11 20 chr5 52895102 52895500 -99641759 - Lx8 LINE L1 -249 5940 5501 7 988 417 186 114 23 chr5 52896958 52897046 -99640213 - B1_Mur1 SINE Alu -1 148 53 7 988 293 68 23 0 chr5 52897089 52897133 -99640126 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 7 988 281 310 159 0 chr5 52897218 52897331 -99639928 - MLT1A1 LTR MaLR -276 132 2 7 988 404 222 147 56 chr5 52897349 52897492 -99639767 + L1MB1 LINE L1 5758 5913 -255 7 988 713 234 7 0 chr5 52897492 52897629 -99639630 + ID_B1 SINE B4 84 221 -3 7 988 479 297 61 5 chr5 52897629 52897842 -99639417 + L1MB2 LINE L1 5905 6129 -42 7 988 756 291 15 5 chr5 52899277 52899474 -99637785 + MER58A DNA MER1_type 6 204 -20 7 988 293 275 8 0 chr5 52900094 52900181 -99637078 + L1M4 LINE L1 2740 2829 -3317 7 988 231 220 74 42 chr5 52900223 52900244 -99637015 - ORR1C1 LTR MaLR -4 374 355 7 988 303 150 36 36 chr5 52900244 52900327 -99636932 + Lx6 LINE L1 7378 7460 0 7 988 231 227 69 43 chr5 52900327 52900411 -99636848 - ORR1C1 LTR MaLR -24 354 266 7 988 464 294 32 0 chr5 52900609 52900735 -99636524 - ID_B1 SINE B4 -14 210 81 7 988 986 152 6 0 chr5 52901978 52902155 -99635104 + CT-rich Low_complexity Low_complexity 3 180 0 7 988 273 319 21 62 chr5 52902546 52902643 -99634616 - B1_Mm SINE Alu -54 93 1 7 988 945 142 0 0 chr5 52902768 52902803 -99634456 + B1_Mus1 SINE Alu 6 139 -9 7 988 343 279 104 56 chr5 52902803 52902902 -99634357 + RLTR25B LTR ERVK 441 548 -480 7 988 846 116 0 0 chr5 52902902 52903031 -99634228 + (GGAA)n Simple_repeat Simple_repeat 3 131 0 7 988 343 279 104 56 chr5 52903031 52903075 -99634184 + RLTR25B LTR ERVK 549 591 -437 7 988 650 182 18 0 chr5 52903046 52903156 -99634103 + B1_Mur3 SINE Alu 37 148 -1 7 988 458 246 103 0 chr5 52903310 52903436 -99633823 + MLT1A0 LTR MaLR 225 363 -2 7 988 294 241 143 44 chr5 52903581 52903672 -99633587 - RSINE1 SINE B4 -64 101 2 7 988 433 346 72 64 chr5 52903772 52904118 -99633141 - LTR16C LTR ERVL -34 455 107 7 988 240 313 59 33 chr5 52904185 52904337 -99632922 + MLT1A0 LTR MaLR 417 572 -23 7 988 4611 209 110 57 chr5 52904568 52905746 -99631513 + ORR1D1-int LTR MaLR 130 1370 0 7 988 1220 199 132 23 chr5 52905748 52905957 -99631302 + ORR1D1 LTR MaLR 4 233 -141 7 988 483 18 0 0 chr5 52905957 52906013 -99631246 + (CCTG)n Simple_repeat Simple_repeat 3 58 0 7 988 1220 199 132 23 chr5 52906013 52906106 -99631153 + ORR1D1 LTR MaLR 234 338 -36 7 988 1160 90 0 0 chr5 52906257 52906402 -99630857 + B1_Mus2 SINE Alu 1 145 -2 7 988 216 0 0 0 chr5 52906402 52906426 -99630833 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 988 202 286 71 12 chr5 52907737 52907822 -99629437 + MIR3 SINE MIR 78 167 -41 7 988 584 322 48 9 chr5 52908642 52908852 -99628407 - ID_B1 SINE B4 0 224 7 7 988 553 232 111 204 chr5 52908862 52909258 -99628001 - ORR1E LTR MaLR 0 359 1 7 988 280 312 41 51 chr5 52909329 52909427 -99627832 - PB1D10 SINE Alu -21 127 30 7 988 274 274 219 17 chr5 52909788 52909907 -99627352 + B4A SINE B4 82 224 -68 7 988 518 215 19 0 chr5 52909801 52909908 -99627351 + PB1D10 SINE Alu 8 116 -1 7 988 268 226 137 21 chr5 52909990 52910085 -99627174 + MLT1J LTR MaLR 213 318 -194 7 988 663 339 107 9 chr5 52910219 52910564 -99626695 - MT2A LTR ERVL -149 384 6 7 988 3977 90 16 31 chr5 52910907 52911480 -99625779 - LTRIS2 LTR ERV1 0 564 1 7 988 194 338 50 0 chr5 52911526 52911606 -99625653 + MIRm SINE MIR 58 141 -135 7 988 811 255 56 59 chr5 52912638 52912926 -99624333 + ORR1E LTR MaLR 1 287 -72 7 988 239 309 10 50 chr5 52913741 52913840 -99623419 - MLT1H1 LTR MaLR -28 527 433 7 988 235 295 53 79 chr5 52914266 52914380 -99622879 - MLT1H1 LTR MaLR -364 215 105 7 988 2477 101 3 0 chr5 52914573 52914899 -99622360 + ORR1A2 LTR MaLR 1 327 0 7 988 189 235 298 19 chr5 52916489 52916593 -99620666 - MIR SINE MIR -115 147 15 7 988 363 297 3 19 chr5 52916845 52916961 -99620298 + PB1D10 SINE Alu 4 120 0 7 988 1240 114 32 11 chr5 52917168 52917354 -99619905 + B2_Mm2 SINE B2 2 191 -4 7 988 395 341 84 26 chr5 52917384 52917574 -99619685 - MER58A DNA MER1_type 0 224 24 7 988 297 0 0 0 chr5 52917607 52917640 -99619619 + (A)n Simple_repeat Simple_repeat 1 33 0 7 988 292 303 172 17 chr5 52917878 52918116 -99619143 - L2 LINE L2 -513 2906 2632 7 988 217 216 0 0 chr5 52918260 52918297 -99618962 + (CACG)n Simple_repeat Simple_repeat 4 40 0 7 988 412 300 10 20 chr5 52919337 52919439 -99617820 + B4 SINE B4 117 217 -75 8 988 263 288 0 0 chr5 52919416 52919482 -99617777 + MER53 DNA hAT 128 193 0 8 988 494 293 29 23 chr5 52919574 52919745 -99617514 + MIRb SINE MIR 68 239 -29 8 988 421 279 141 13 chr5 52921308 52921464 -99615795 - MLT1F1 LTR MaLR -27 542 367 8 988 183 80 0 0 chr5 52921564 52921589 -99615670 + (A)n Simple_repeat Simple_repeat 1 25 0 8 988 653 191 0 20 chr5 52921596 52921731 -99615528 + B1_Mur1 SINE Alu 19 148 -1 8 988 353 288 26 26 chr5 52921767 52921881 -99615378 - MLT1F1 LTR MaLR -439 130 17 8 988 589 217 0 11 chr5 52922235 52922417 -99614842 + CT-rich Low_complexity Low_complexity 1 180 0 8 988 254 109 155 52 chr5 52922423 52922481 -99614778 - B1_Mur1 SINE Alu -37 112 49 8 988 261 0 0 0 chr5 52923210 52923239 -99614020 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8 988 456 309 118 39 chr5 52923840 52924139 -99613120 + MLT1E1A LTR MaLR 302 608 -46 8 988 319 317 55 31 chr5 52926116 52926243 -99611016 + MIRc SINE MIR 61 190 -78 8 988 309 125 40 27 chr5 52926544 52926618 -99610641 + GA-rich Low_complexity Low_complexity 2 76 0 8 988 396 0 0 0 chr5 52928379 52928423 -99608836 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 988 27 29 0 0 chr5 52929100 52929134 -99608125 + AT_rich Low_complexity Low_complexity 1 34 0 8 988 324 287 46 0 chr5 52930131 52930239 -99607020 + L1MB3 LINE L1 5583 5695 -485 8 988 1692 199 67 81 chr5 52930415 52930836 -99606423 - MTD LTR MaLR 0 419 5 8 988 2328 154 65 12 chr5 52930996 52931396 -99605863 + MTC LTR MaLR 1 421 0 8 988 239 340 155 0 chr5 52931862 52931965 -99605294 + MLT1A0 LTR MaLR 72 190 -175 8 988 297 328 148 0 chr5 52932022 52932251 -99605008 + RSINE1 SINE B4 39 280 -12 8 988 540 210 119 13 chr5 52932274 52932423 -99604836 + MLT1A0 LTR MaLR 232 390 0 8 988 690 254 5 10 chr5 52932434 52932637 -99604622 + L1MB3 LINE L1 5703 5904 -279 8 988 208 386 11 11 chr5 52933562 52933651 -99603608 - MIRb SINE MIR -140 128 40 8 988 399 214 31 100 chr5 52933718 52933848 -99603411 - L1ME4a LINE L1 -120 6004 5884 8 988 718 195 12 75 chr5 52933908 52934069 -99603190 - B4 SINE B4 -134 158 8 8 988 829 164 37 145 chr5 52934154 52934396 -99602863 + B3 SINE B2 1 216 0 8 988 489 76 0 0 chr5 52934829 52934895 -99602364 + (TG)n Simple_repeat Simple_repeat 2 67 0 8 988 210 128 0 0 chr5 52934917 52934956 -99602303 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 8 988 290 159 0 31 chr5 52937276 52937341 -99599918 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 8 988 474 243 6 75 chr5 52938774 52938791 -99598468 + ID_B1 SINE B4 75 223 -1 8 988 787 156 14 56 chr5 52938791 52938934 -99598325 + B1_Mur1 SINE Alu 12 148 -1 8 988 1175 34 0 20 chr5 52939519 52939668 -99597591 + B1_Mus2 SINE Alu 1 146 -1 8 988 501 32 0 0 chr5 52939897 52939960 -99597299 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 988 1055 197 0 20 chr5 52940935 52941137 -99596122 + B3A SINE B2 1 198 0 8 988 4135 140 58 7 chr5 52941161 52941845 -99595414 + Lx4B LINE L1 6340 7058 0 8 988 243 0 0 0 chr5 52942135 52942162 -99595097 + (A)n Simple_repeat Simple_repeat 1 27 0 8 988 295 250 95 98 chr5 52942644 52942990 -99594269 + RMER17A2 LTR ERVK 124 491 -415 8 988 192 97 0 0 chr5 52943030 52943061 -99594198 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 988 919 270 65 25 chr5 52944695 52944972 -99592287 + B4 SINE B4 5 292 0 8 988 345 289 32 88 chr5 52945031 52945063 -99592196 + ID_B1 SINE B4 49 169 -55 8 988 412 307 29 21 chr5 52945063 52945203 -99592056 + B1F2 SINE Alu 1 141 -8 8 988 345 289 32 88 chr5 52945203 52945215 -99592044 + ID_B1 SINE B4 170 223 -1 8 988 612 269 58 0 chr5 52945330 52945486 -99591773 - RSINE1 SINE B4 0 165 1 8 988 2997 68 32 22 chr5 52945874 52946277 -99590982 + MTB_Mm LTR MaLR 1 407 0 8 988 541 257 0 9 chr5 52947268 52947378 -99589881 + B1_Mur1 SINE Alu 2 110 -39 8 988 377 328 67 22 chr5 52947378 52947400 -99589859 + B4 SINE B4 87 224 -68 8 988 183 340 139 21 chr5 52947564 52947708 -99589551 + L2a LINE L2 3261 3421 -5 8 988 201 119 0 45 chr5 52948707 52948751 -99588508 + T-rich Low_complexity Low_complexity 2 43 0 8 988 185 107 0 0 chr5 52949439 52949467 -99587792 - L2 LINE L2 -2611 808 781 8 988 392 55 18 0 chr5 52949534 52949589 -99587670 + (GGA)n Simple_repeat Simple_repeat 2 57 0 8 988 261 57 0 0 chr5 52949604 52949639 -99587620 + (TGG)n Simple_repeat Simple_repeat 1 35 0 8 988 733 162 72 22 chr5 52950115 52950254 -99587005 - B1_Mus2 SINE Alu 0 147 2 8 988 207 0 0 0 chr5 52950266 52950289 -99586970 + (T)n Simple_repeat Simple_repeat 1 23 0 8 988 932 289 19 27 chr5 52951111 52951374 -99585885 - B4 SINE B4 0 292 32 8 989 211 298 188 26 chr5 52953755 52953872 -99583387 - MIR3 SINE MIR -9 199 64 8 989 653 256 66 0 chr5 52954112 52954249 -99583010 - RSINE1 SINE B4 -2 163 18 8 989 361 190 55 0 chr5 52954477 52954559 -99582700 - ID4 SINE ID -60 92 7 8 989 378 294 0 21 chr5 52954752 52954846 -99582413 + MIRb SINE MIR 84 175 -93 8 989 201 333 47 12 chr5 52955807 52955892 -99581367 - MIRm SINE MIR -176 100 13 8 989 32 57 0 0 chr5 52957351 52957404 -99579855 + GC_rich Low_complexity Low_complexity 1 53 0 8 989 22 70 0 0 chr5 52957541 52957584 -99579675 + GC_rich Low_complexity Low_complexity 1 43 0 8 989 26 30 0 0 chr5 52957654 52957687 -99579572 + GC_rich Low_complexity Low_complexity 1 33 0 8 989 288 0 0 0 chr5 52957837 52957869 -99579390 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 8 989 181 138 0 0 chr5 52958389 52958418 -99578841 - MIR SINE MIR -66 142 114 8 989 320 239 0 0 chr5 52958976 52959043 -99578216 - ORR1D1 LTR MaLR -1 378 312 8 989 3209 152 69 46 chr5 52959026 52959638 -99577621 - RMER19B LTR ERVK -276 626 1 8 989 296 310 103 65 chr5 52959638 52959734 -99577525 - MTE2b LTR MaLR -279 100 1 8 989 203 152 0 0 chr5 52959803 52959836 -99577423 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 989 1072 157 5 66 chr5 52959836 52960048 -99577211 - ORR1D1 LTR MaLR -173 201 3 8 989 183 329 138 59 chr5 52960520 52960672 -99576587 - L2b LINE L2 -27 3348 3185 8 989 396 330 206 46 chr5 52960709 52961312 -99575947 - L2b LINE L2 -337 3082 2384 8 989 333 0 0 0 chr5 52961822 52961859 -99575400 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 989 557 259 36 22 chr5 52962423 52962561 -99574698 + MTE2a LTR MaLR 40 179 -200 8 989 470 322 39 6 chr5 52962564 52962742 -99574517 + B3A SINE B2 2 185 -13 8 989 528 241 27 0 chr5 52962776 52962888 -99574371 + PB1D9 SINE Alu 4 118 -2 8 989 680 242 37 6 chr5 52962943 52963105 -99574154 + MTE2a LTR MaLR 209 375 -4 8 989 270 264 34 22 chr5 52963263 52963352 -99573907 + MLT1K LTR MaLR 475 564 -31 8 989 206 267 0 0 chr5 52963530 52963575 -99573684 + (TATATG)n Simple_repeat Simple_repeat 5 49 0 8 989 829 282 34 38 chr5 52963577 52963868 -99573391 - B4A SINE B4 -2 290 1 8 989 479 262 19 0 chr5 52963982 52964089 -99573170 + B3 SINE B2 102 210 -6 8 989 1285 41 0 0 chr5 52964108 52964255 -99573004 - B1_Mus1 SINE Alu 0 148 2 8 989 668 313 21 37 chr5 52965119 52965361 -99571898 + ORR1E LTR MaLR 1 238 -121 8 989 475 307 3 25 chr5 52965421 52965585 -99571674 + ORR1E LTR MaLR 209 379 0 8 989 266 176 19 19 chr5 52965585 52965637 -99571622 + ORR1E-int LTR MaLR 2 53 -1527 8 989 678 279 12 6 chr5 52965638 52965811 -99571448 + ORR1E-int LTR MaLR 7 180 -1400 8 989 227 240 27 155 chr5 52965807 52965955 -99571304 + MTD LTR MaLR 180 308 -111 8 989 535 183 47 19 chr5 52966064 52966170 -99571089 - MTC LTR MaLR -289 132 24 8 989 2094 200 26 14 chr5 52966405 52966821 -99570438 + MTC LTR MaLR 1 421 0 8 989 2233 107 6 3 chr5 52967200 52967518 -99569741 - ORR1A2 LTR MaLR -8 319 1 8 989 4497 117 67 7 chr5 52968285 52968998 -99568261 + RMER6A LTR ERVK 1 756 0 8 989 22 80 0 0 chr5 52969323 52969373 -99567886 + AT_rich Low_complexity Low_complexity 1 50 0 8 989 282 29 0 0 chr5 52969560 52969595 -99567664 + (CTG)n Simple_repeat Simple_repeat 1 35 0 8 989 732 219 75 50 chr5 52969634 52969662 -99567597 - RSINE1 SINE B4 0 165 138 8 989 861 10 0 0 chr5 52969662 52969760 -99567499 + (TG)n Simple_repeat Simple_repeat 1 98 0 8 989 732 219 75 50 chr5 52969760 52969890 -99567369 - RSINE1 SINE B4 -28 137 4 8 989 468 305 19 82 chr5 52970072 52970390 -99566869 - LTR16B1 LTR ERVL -157 323 26 8 989 2192 191 25 34 chr5 52971160 52971631 -99565628 + RLTR11A LTR ERVK 16 482 -46 8 989 207 373 36 9 chr5 52972344 52972455 -99564804 + L2a LINE L2 3263 3376 -50 8 989 248 0 31 0 chr5 52975694 52975726 -99561533 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 8 989 1146 88 0 0 chr5 52975726 52975863 -99561396 - B1_Mus1 SINE Alu -9 139 3 8 989 303 361 24 61 chr5 52975880 52976045 -99561214 - MLT1C LTR MaLR -303 164 6 8 989 634 241 37 122 chr5 52976046 52976367 -99560892 - Charlie5 DNA MER1_type -125 2499 2206 8 989 283 303 107 0 chr5 52976382 52976504 -99560755 + MLT1A1 LTR MaLR 270 404 -4 8 989 324 296 11 43 chr5 52976594 52976686 -99560573 - MIRm SINE MIR -95 181 93 8 989 344 242 0 0 chr5 52977195 52977261 -99559998 - L2b LINE L2 -1 3374 3309 8 989 206 286 49 32 chr5 52977348 52977471 -99559788 - L2b LINE L2 -262 3113 2989 8 989 231 261 0 0 chr5 52977939 52977985 -99559274 + polypurine Low_complexity Low_complexity 1 46 0 8 989 221 271 26 79 chr5 52978919 52978995 -99558264 - ID4_ SINE ID -10 73 2 8 989 697 290 102 7 chr5 52979298 52979593 -99557666 - MLT1D LTR MaLR -155 350 28 8 989 783 321 101 45 chr5 52979714 52980207 -99557052 + LTR33A_ LTR ERVL 8 528 -3 8 989 403 350 95 48 chr5 52980990 52981214 -99556045 - MLT1D LTR MaLR -246 259 25 8 989 718 199 0 0 chr5 52981214 52981345 -99555914 + RSINE1 SINE B4 2 132 -33 8 989 218 239 0 9 chr5 52981547 52981661 -99555598 + CT-rich Low_complexity Low_complexity 1 113 0 9 989 283 190 40 138 chr5 52982387 52982430 -99554829 + PB1D10 SINE Alu 33 110 -17 9 989 301 176 0 0 chr5 52982430 52982481 -99554778 + ID_B1 SINE B4 174 224 0 9 989 1910 169 50 19 chr5 52982676 52983039 -99554220 + ORR1D1 LTR MaLR 1 374 0 9 989 372 296 25 42 chr5 52983074 52983194 -99554065 + PB1D7 SINE Alu 1 118 -2 9 989 1181 249 57 60 chr5 52985120 52985248 -99552011 - MTE2b LTR MaLR -41 338 211 9 989 1423 95 0 5 chr5 52985248 52985439 -99551820 - B2_Mm2 SINE B2 -5 190 1 9 989 1181 249 57 60 chr5 52985439 52985643 -99551616 - MTE2b LTR MaLR -169 210 7 9 989 912 214 87 0 chr5 52986283 52986479 -99550780 - B3 SINE B2 -3 213 1 9 989 336 68 0 17 chr5 52986495 52986555 -99550704 - B2_Mm2 SINE B2 0 195 137 9 989 1222 110 35 0 chr5 52986634 52986807 -99550452 - B2_Mm1t SINE B2 -14 179 1 9 989 3237 131 117 54 chr5 52986921 52987290 -99549969 - RMER17A LTR ERVK -7 744 354 9 989 833 96 0 8 chr5 52987290 52987416 -99549843 + (GGAGA)n Simple_repeat Simple_repeat 2 126 0 9 989 3237 131 117 54 chr5 52987416 52987746 -99549513 - RMER17A LTR ERVK -398 353 3 9 989 288 359 164 0 chr5 52987746 52987873 -99549386 + MER58B DNA MER1_type 181 328 -13 9 989 1368 193 211 103 chr5 52988259 52988675 -99548584 + MT2A LTR ERVL 1 461 -72 9 989 645 164 16 43 chr5 52988679 52988864 -99548395 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 9 989 342 0 0 0 chr5 52989416 52989454 -99547805 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 989 1622 157 188 20 chr5 52990553 52990910 -99546349 + MTC LTR MaLR 1 417 -4 9 989 228 111 0 45 chr5 52991083 52991149 -99546110 + T-rich Low_complexity Low_complexity 1 63 0 9 989 216 0 0 0 chr5 52991146 52991170 -99546089 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 9 989 779 203 28 0 chr5 52991171 52991314 -99545945 - B1_Mm SINE Alu 0 147 1 9 989 3160 218 121 17 chr5 52991332 52991688 -99545571 - RCHARR1 DNA MER1_type -82 892 527 9 989 261 0 0 0 chr5 52991688 52991717 -99545542 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 989 3160 218 121 17 chr5 52991717 52992165 -99545094 - RCHARR1 DNA MER1_type -448 526 7 9 989 237 182 91 0 chr5 52992677 52992732 -99544527 + MER53 DNA hAT 75 134 -59 9 989 240 211 0 0 chr5 52992784 52992822 -99544437 + RSINE1 SINE B4 104 141 -24 9 989 232 298 71 50 chr5 52993657 52993756 -99543503 + MIRc SINE MIR 17 117 -151 9 989 263 132 0 102 chr5 52993756 52993815 -99543444 - MLT1J2 LTR MaLR 0 448 396 9 989 1079 189 15 19 chr5 52995174 52995379 -99541880 + B4 SINE B4 8 211 -81 9 989 186 43 0 0 chr5 52995381 52995404 -99541855 + (GAAA)n Simple_repeat Simple_repeat 1 23 0 9 989 195 188 0 0 chr5 52995404 52995452 -99541807 + GA-rich Low_complexity Low_complexity 1 48 0 9 989 259 241 0 0 chr5 52995480 52995538 -99541721 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 989 563 218 31 46 chr5 52995591 52995721 -99541538 + B1F SINE Alu 22 149 0 9 989 229 324 68 51 chr5 52996968 52997085 -99540174 + MIR SINE MIR 107 225 -37 9 989 184 120 0 0 chr5 52997419 52997444 -99539815 - MIRm SINE MIR -20 256 232 9 989 196 255 51 41 chr5 52997518 52997616 -99539643 + MER5B DNA MER1_type 77 175 -3 9 989 692 309 98 48 chr5 52998333 52998670 -99538589 - ORR1E LTR MaLR -5 354 1 9 989 1164 246 157 6 chr5 52998782 52999101 -99538158 - ORR1D2 LTR MaLR 0 370 4 9 989 798 147 112 0 chr5 52999378 52999521 -99537738 - RMER4A LTR ERVK 0 466 308 9 989 2873 115 32 22 chr5 52999523 52999984 -99537275 - RMER4A LTR ERVK 0 466 1 9 989 1799 149 61 67 chr5 53000242 53000310 -99536949 + ORR1B2 LTR MaLR 2 60 -307 1 989 1351 69 40 0 chr5 53000310 53000483 -99536776 + B2_Mm2 SINE B2 2 181 -14 2 989 1799 149 61 67 chr5 53000483 53000774 -99536485 + ORR1B2 LTR MaLR 61 359 -8 1 989 331 323 25 25 chr5 53001094 53001256 -99536003 - LTR82B Low_complexity ERVL -150 680 519 3 989 389 303 56 14 chr5 53001124 53001268 -99535991 - LTR82A LTR ERVL -186 686 537 4 989 381 300 129 5 chr5 53001414 53001615 -99535644 - MIR SINE MIR -8 254 29 5 989 390 242 75 75 chr5 53001984 53002054 -99535205 + B1F SINE Alu 7 84 -65 6 989 369 0 0 0 chr5 53002054 53002095 -99535164 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 7 989 390 242 75 75 chr5 53002095 53002158 -99535101 + B1F SINE Alu 85 140 -9 6 989 3483 167 84 14 chr5 53002451 53003237 -99534022 + RMER1B Other Other 55 1062 -4 8 989 226 264 185 39 chr5 53003521 53003651 -99533608 + MLT1A0 LTR MaLR 215 363 -2 9 989 407 19 19 0 chr5 53004058 53004110 -99533149 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 989 378 0 0 0 chr5 53004110 53004151 -99533108 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 989 260 243 55 41 chr5 53004618 53004691 -99532568 + MIRc SINE MIR 78 151 -117 1 989 1080 233 114 60 chr5 53004699 53005050 -99532209 + MTEa LTR MaLR 10 379 0 1 989 199 258 22 125 chr5 53005477 53005576 -99531683 - MIR SINE MIR -70 198 105 1 989 455 291 72 63 chr5 53005598 53005984 -99531275 + MLT1D LTR MaLR 27 505 0 1 989 328 232 24 12 chr5 53006199 53006282 -99530977 + MIRm SINE MIR 97 180 -96 1 989 291 292 87 11 chr5 53006565 53006718 -99530541 + MIR SINE MIR 88 258 -10 1 989 1277 309 89 86 chr5 53006746 53007322 -99529937 - MER44C DNA MER2_type -43 690 106 1 989 691 279 75 47 chr5 53007322 53007600 -99529659 - B4 SINE B4 -2 290 5 1 989 1277 309 89 86 chr5 53007600 53007695 -99529564 - MER44C DNA MER2_type -628 105 17 1 989 22 0 0 0 chr5 53008441 53008463 -99528796 + GC_rich Low_complexity Low_complexity 1 22 0 2 989 316 306 77 50 chr5 53008958 53009140 -99528119 + MIR SINE MIR 38 224 -38 2 989 248 327 0 27 chr5 53010343 53010453 -99526806 + G-rich Low_complexity Low_complexity 4 110 0 2 989 302 315 5 78 chr5 53010404 53010554 -99526705 + polypurine Low_complexity Low_complexity 1 139 0 2 989 866 231 15 15 chr5 53010554 53010756 -99526503 + B3 SINE B2 3 204 -12 2 989 302 315 5 78 chr5 53010756 53010869 -99526390 + polypurine Low_complexity Low_complexity 82 180 0 2 989 6279 24 0 0 chr5 53012065 53012774 -99524485 + L1Md_A LINE L1 5874 6582 0 2 989 420 278 182 94 chr5 53013213 53013543 -99523716 + ORR1E LTR MaLR 1 359 0 2 989 279 0 0 0 chr5 53013579 53013610 -99523649 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 989 394 183 0 45 chr5 53014705 53014801 -99522458 - ID4 SINE ID -49 103 13 2 989 253 251 32 58 chr5 53014787 53014895 -99522364 - 7SLRNA srpRNA srpRNA -41 108 11 3 989 217 255 18 18 chr5 53014950 53015006 -99522253 + L2b LINE L2 3307 3362 -13 3 989 261 0 0 0 chr5 53015052 53015081 -99522178 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 989 1050 107 0 0 chr5 53015260 53015419 -99521840 + (GGATG)n Simple_repeat Simple_repeat 3 161 0 3 989 757 231 68 34 chr5 53016677 53016883 -99520376 + B4A SINE B4 21 233 -59 3 989 676 186 0 0 chr5 53017232 53017345 -99519914 + PB1D10 SINE Alu 5 117 0 3 989 301 164 27 0 chr5 53017955 53018028 -99519231 + GA-rich Low_complexity Low_complexity 2 76 0 3 989 274 317 20 0 chr5 53018202 53018337 -99518922 + (CATATA)n Simple_repeat Simple_repeat 1 137 0 3 989 489 17 0 0 chr5 53018602 53018660 -99518599 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 989 192 327 142 46 chr5 53018836 53019054 -99518205 - L3 LINE CR1 -1157 3332 3094 3 989 240 271 43 0 chr5 53019398 53019468 -99517791 - MIR SINE MIR -141 121 49 4 989 576 267 146 17 chr5 53019779 53020019 -99517240 + MLT1C LTR MaLR 43 313 -154 4 989 378 235 0 0 chr5 53021209 53021311 -99515948 + (TG)n Simple_repeat Simple_repeat 2 103 0 4 989 382 320 57 8 chr5 53022095 53022218 -99515041 + MER58B DNA MER1_type 20 148 -193 4 989 2237 213 23 121 chr5 53022227 53022503 -99514756 - RMER15 LTR ERVL 0 575 299 4 989 2428 86 26 84 chr5 53022503 53022884 -99514375 - RLTR10D LTR ERVK 0 359 1 4 989 2237 213 23 121 chr5 53022884 53023221 -99514038 - RMER15 LTR ERVL -277 298 22 4 989 285 217 0 48 chr5 53023302 53023365 -99513894 - RMER15 LTR ERVL -510 65 6 4 989 273 283 67 48 chr5 53023813 53023917 -99513342 + MLT1C LTR MaLR 291 396 -12 4 989 559 278 98 6 chr5 53024127 53024283 -99512976 + MTEa LTR MaLR 18 189 -190 4 989 1305 246 73 21 chr5 53024283 53024658 -99512601 - ORR1D2 LTR MaLR 0 370 4 4 989 183 174 106 21 chr5 53024987 53025034 -99512225 - MIR3 SINE MIR -145 63 13 4 989 180 77 0 0 chr5 53025707 53025733 -99511526 + (A)n Simple_repeat Simple_repeat 1 26 0 4 989 860 257 44 52 chr5 53026489 53026739 -99510520 - B4 SINE B4 -2 290 43 5 989 605 25 13 0 chr5 53026825 53026904 -99510355 + (TC)n Simple_repeat Simple_repeat 2 81 0 5 989 291 184 17 0 chr5 53027205 53027276 -99509983 + PB1D10 SINE Alu 63 149 0 5 989 994 248 114 40 chr5 53028120 53028470 -99508789 - MTD LTR MaLR -5 374 12 5 989 743 238 178 8 chr5 53028713 53028955 -99508304 + B4A SINE B4 2 284 -8 5 989 455 252 0 50 chr5 53029982 53030103 -99507156 - PB1D10 SINE Alu -2 115 1 5 989 184 250 112 35 chr5 53030131 53030247 -99507012 - L2 LINE L2 -834 2585 2461 5 989 252 0 0 0 chr5 53031077 53031105 -99506154 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 989 390 206 140 11 chr5 53031105 53031198 -99506061 - RSINE1 SINE B4 -59 106 2 5 989 27 73 0 0 chr5 53031364 53031419 -99505840 + AT_rich Low_complexity Low_complexity 1 55 0 5 989 180 0 0 0 chr5 53031590 53031610 -99505649 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 989 25 31 0 0 chr5 53032421 53032453 -99504806 + AT_rich Low_complexity Low_complexity 1 32 0 6 989 233 109 0 21 chr5 53033994 53034041 -99503218 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 6 989 257 321 46 28 chr5 53034531 53034640 -99502619 - MER20 DNA MER1_type -19 200 90 6 989 592 216 78 23 chr5 53035876 53036004 -99501255 + B1_Mur3 SINE Alu 2 136 -13 6 989 356 216 71 79 chr5 53036230 53036356 -99500903 + B3A SINE B2 1 125 -73 6 989 1731 139 69 69 chr5 53036411 53036789 -99500470 + ORR1C1 LTR MaLR 1 378 0 6 989 962 266 75 63 chr5 53036935 53037349 -99499910 + MTD LTR MaLR 1 419 0 6 989 347 252 19 37 chr5 53037491 53037598 -99499661 + B1F SINE Alu 40 144 -5 6 989 218 309 0 0 chr5 53039213 53039255 -99498004 - PB1 SINE Alu -71 56 15 6 989 223 238 73 24 chr5 53039313 53039395 -99497864 + L2 LINE L2 2750 2835 -584 7 989 204 125 0 0 chr5 53039506 53039538 -99497721 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 989 271 279 29 0 chr5 53039541 53039609 -99497650 - ID2 SINE ID -13 70 1 7 989 637 228 138 12 chr5 53040282 53040325 -99496934 - B3 SINE B2 -1 215 165 7 989 330 87 0 0 chr5 53040325 53040371 -99496888 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 989 637 228 138 12 chr5 53040371 53040487 -99496772 - B3 SINE B2 -52 164 37 7 989 220 299 264 0 chr5 53041674 53041761 -99495498 - PB1D10 SINE Alu -6 111 2 7 989 400 250 133 9 chr5 53044260 53044373 -99492886 + RSINE1 SINE B4 3 129 -36 7 989 1131 36 7 0 chr5 53044536 53044674 -99492585 + B1_Mus2 SINE Alu 9 147 0 7 989 338 288 120 59 chr5 53044964 53045162 -99492097 - L1MD LINE L1 -2208 5787 5569 7 989 4985 50 8 16 chr5 53045162 53045793 -99491466 + L1Md_F2 LINE L1 5957 6582 0 7 989 338 288 120 59 chr5 53045793 53045905 -99491354 - L1MD LINE L1 -2427 5568 5462 7 989 297 0 0 0 chr5 53045905 53045938 -99491321 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 989 338 288 120 59 chr5 53045938 53045984 -99491275 - L1MD LINE L1 -2534 5461 5409 7 989 382 117 83 55 chr5 53046325 53046444 -99490815 - PB1 SINE Alu -13 134 10 8 989 265 233 0 76 chr5 53046380 53046459 -99490800 - B4A SINE B4 -138 154 82 8 989 292 121 85 17 chr5 53046626 53046685 -99490574 - PB1 SINE Alu -4 123 61 8 989 598 248 0 8 chr5 53046717 53046851 -99490408 + B1F2 SINE Alu 2 134 -15 8 989 198 0 0 0 chr5 53046853 53046875 -99490384 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 8 989 284 229 0 32 chr5 53046946 53047009 -99490250 + RSINE1 SINE B4 101 161 -4 7 989 246 223 210 16 chr5 53049718 53049831 -99487428 + MIR SINE MIR 48 176 -92 8 989 513 235 47 24 chr5 53050230 53050400 -99486859 + B3A SINE B2 1 174 -24 8 989 252 0 0 0 chr5 53050401 53050429 -99486830 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 8 989 712 281 12 36 chr5 53050674 53050840 -99486419 + RSINE1 SINE B4 3 164 -1 8 989 654 248 104 47 chr5 53051349 53051561 -99485698 + B4A SINE B4 1 224 -68 9 989 238 255 18 153 chr5 53051566 53051677 -99485582 + B3 SINE B2 113 208 -8 9 989 21 0 0 0 chr5 53051842 53051863 -99485396 + AT_rich Low_complexity Low_complexity 1 21 0 9 989 579 130 8 188 chr5 53052221 53052354 -99484905 + B1F2 SINE Alu 36 144 -5 9 989 466 198 41 10 chr5 53052908 53053005 -99484254 + B1_Mur1 SINE Alu 48 147 -2 9 989 1765 184 46 19 chr5 53053153 53053519 -99483740 + ORR1C1 LTR MaLR 2 377 -1 9 989 877 236 52 42 chr5 53053540 53053828 -99483431 + B4A SINE B4 2 292 0 9 989 404 68 102 0 chr5 53055884 53055943 -99481316 + B2_Mm2 SINE B2 2 66 -129 9 989 32 26 0 0 chr5 53055943 53055982 -99481277 + AT_rich Low_complexity Low_complexity 1 39 0 9 989 800 159 20 33 chr5 53056761 53056911 -99480348 + B1_Mur1 SINE Alu 1 148 -1 9 989 470 171 56 28 chr5 53056950 53057058 -99480201 + B1_Mus2 SINE Alu 37 147 0 1 989 275 0 0 28 chr5 53057629 53057665 -99479594 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 1 989 306 229 119 12 chr5 53057936 53058020 -99479239 + MLT1H2 LTR MaLR 373 465 -24 1 989 402 230 40 0 chr5 53058148 53058248 -99479011 - PB1D9 SINE Alu -8 112 9 1 989 531 248 29 0 chr5 53058961 53059098 -99478161 + B1_Mur1 SINE Alu 9 149 0 1 989 768 252 122 55 chr5 53059263 53059591 -99477668 + RMER5 LTR ERV1 159 512 -22 1 989 1492 75 16 0 chr5 53059591 53059779 -99477480 - B2_Mm2 SINE B2 -2 193 3 1 989 768 252 122 55 chr5 53059779 53059794 -99477465 + RMER5 LTR ERV1 513 525 -9 1 989 589 333 102 62 chr5 53061718 53062434 -99474825 + MER89-int LTR ERV1 3812 4556 -2245 1 989 599 158 0 41 chr5 53062632 53062804 -99474455 + GA-rich Low_complexity Low_complexity 3 167 0 1 989 415 178 14 22 chr5 53062822 53062960 -99474299 + GA-rich Low_complexity Low_complexity 1 137 0 1 989 365 299 34 46 chr5 53063018 53063193 -99474066 + MER89-int LTR ERV1 5144 5316 -1485 1 989 1183 311 79 41 chr5 53063271 53063827 -99473432 + MER89-int LTR ERV1 5435 6011 -790 1 989 375 246 73 22 chr5 53063871 53064008 -99473251 + MER89 LTR ERV1 308 451 -108 1 989 451 250 111 48 chr5 53064249 53064438 -99472821 - B3 SINE B2 -10 206 6 1 989 1008 199 88 141 chr5 53065127 53065294 -99471965 + RMER10B LTR ERVL 1 163 -235 1 989 207 0 0 0 chr5 53065294 53065317 -99471942 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 989 1008 199 88 141 chr5 53065317 53065569 -99471690 + RMER10B LTR ERVL 164 398 0 1 989 633 238 13 40 chr5 53065665 53065814 -99471445 - B1_Mur1 SINE Alu -3 146 2 1 989 184 291 0 0 chr5 53066131 53066186 -99471073 + MIR SINE MIR 86 140 -68 1 989 600 50 0 0 chr5 53066230 53066310 -99470949 - L1Md_A LINE L1 0 6582 6503 1 989 558 240 0 0 chr5 53066360 53066460 -99470799 - Lx7 LINE L1 -996 6700 6601 1 989 930 260 59 21 chr5 53066881 53067117 -99470142 - Lx7 LINE L1 -1075 6621 6377 1 989 2666 218 55 19 chr5 53067116 53067752 -99469507 + Lx7 LINE L1 6690 7348 -348 1 989 207 0 0 0 chr5 53067783 53067806 -99469453 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 989 1108 52 7 0 chr5 53067806 53067942 -99469317 - B1_Mus2 SINE Alu -9 138 2 1 989 252 0 0 0 chr5 53068015 53068043 -99469216 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 989 518 240 46 8 chr5 53068043 53068173 -99469086 - B1_Mus2 SINE Alu -7 140 6 1 989 335 271 61 61 chr5 53068075 53068189 -99469070 - B4 SINE B4 -98 194 81 1 989 1233 40 0 0 chr5 53068768 53068916 -99468343 + B1_Mus1 SINE Alu 1 148 0 1 989 244 295 0 0 chr5 53068967 53069028 -99468231 + MLT1G1 LTR MaLR 231 291 -258 1 989 245 226 65 0 chr5 53069143 53069200 -99468059 + MLT1G1 LTR MaLR 491 551 -28 1 989 1624 171 87 52 chr5 53069200 53069625 -99467634 + RMER10A LTR ERVL 1 440 -2 1 989 602 167 20 20 chr5 53069625 53069772 -99467487 + T-rich Low_complexity Low_complexity 1 147 0 1 989 850 241 84 36 chr5 53069811 53070086 -99467173 + B4A SINE B4 1 288 -4 1 989 871 208 264 11 chr5 53070390 53070765 -99466494 - Lx8 LINE L1 0 7473 7004 1 989 520 131 45 45 chr5 53070957 53071069 -99466190 - B1_Mur3 SINE Alu -7 142 31 1 989 23 33 0 0 chr5 53071091 53071121 -99466138 + AT_rich Low_complexity Low_complexity 1 30 0 1 989 388 187 292 9 chr5 53071134 53071247 -99466012 + B1_Mus2 SINE Alu 3 147 0 1 989 291 339 0 24 chr5 53071411 53071535 -99465724 - RSINE1 SINE B4 -42 123 3 1 989 242 175 141 16 chr5 53071572 53071636 -99465623 + PB1D7 SINE Alu 20 91 -29 1 989 591 15 0 0 chr5 53071827 53071895 -99465364 + (GA)n Simple_repeat Simple_repeat 2 69 0 1 989 472 293 124 85 chr5 53072291 53072679 -99464580 + MLT1A1 LTR MaLR 1 403 -5 1 989 251 303 33 92 chr5 53072824 53072944 -99464315 + PB1D10 SINE Alu 3 115 -2 1 989 717 143 40 67 chr5 53072951 53073101 -99464158 + B1_Mur4 SINE Alu 5 150 0 1 989 262 264 109 0 chr5 53073218 53073328 -99463931 - Tigger9a DNA Tigger -38 694 573 1 989 377 281 136 52 chr5 53073514 53073765 -99463494 + L1MD2 LINE L1 6088 6359 0 1 989 485 240 85 8 chr5 53073796 53073926 -99463333 + B4 SINE B4 29 168 -124 1 989 279 0 0 0 chr5 53073978 53074009 -99463250 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 989 746 234 43 38 chr5 53075548 53075757 -99461502 + B3 SINE B2 1 210 -6 1 989 511 248 40 0 chr5 53076625 53076750 -99460509 + ID_B1 SINE B4 84 213 -11 1 989 342 0 0 0 chr5 53076750 53076788 -99460471 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 989 357 314 49 78 chr5 53077011 53077150 -99460109 + MLT1C LTR MaLR 267 408 -59 1 989 426 229 157 54 chr5 53077150 53077335 -99459924 - B3 SINE B2 -12 204 1 1 989 357 314 49 78 chr5 53077335 53077399 -99459860 + MLT1C LTR MaLR 409 464 -3 1 989 1627 224 85 11 chr5 53078084 53078437 -99458822 + MTE2b LTR MaLR 1 379 0 1 989 199 29 0 79 chr5 53079295 53079333 -99457926 + (CATA)n Simple_repeat Simple_repeat 1 35 0 1 989 207 0 0 0 chr5 53079399 53079422 -99457837 + (T)n Simple_repeat Simple_repeat 1 23 0 1 989 689 290 75 37 chr5 53079690 53079984 -99457275 - RMER20B LTR ERVK -214 413 109 1 989 2331 150 65 19 chr5 53081056 53081485 -99455774 - RLTR44B LTR ERVK 0 449 1 1 989 4841 37 44 0 chr5 53081485 53082059 -99455200 - RLTR44-int LTR ERVK 0 2812 2214 1 989 4990 82 11 45 chr5 53082357 53083073 -99454186 - RLTR44-int LTR ERVK -1323 1489 798 1 989 397 171 57 0 chr5 53083102 53083172 -99454087 - RLTR44-int LTR ERVK -2738 74 1 1 989 1769 147 101 19 chr5 53083182 53083549 -99453710 - RLTR44B LTR ERVK -8 397 1 1 989 501 254 55 0 chr5 53083560 53083725 -99453534 + L1M5 LINE L1 5023 5196 -950 1 989 413 231 121 69 chr5 53083735 53083769 -99453490 + B3A SINE B2 1 42 -156 1 989 2944 36 0 0 chr5 53083769 53084101 -99453158 + IAPEY3_LTR LTR ERVK 1 332 0 1 123 413 260 101 61 chr5 53084101 53084254 -99453005 + B3A SINE B2 38 193 -2 1 990 251 242 152 0 chr5 53084558 53084624 -99452635 + PB1D10 SINE Alu 5 80 -37 1 990 631 266 206 23 chr5 53084671 53085079 -99452180 + BLACKJACK DNA AcHobo 1202 1687 -1257 1 990 520 248 137 7 chr5 53085079 53085225 -99452034 + RSINE1 SINE B4 1 165 0 1 990 631 266 206 23 chr5 53085225 53085243 -99452016 + BLACKJACK DNA AcHobo 1688 1705 -1239 1 990 369 0 0 0 chr5 53085264 53085305 -99451954 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 990 448 253 0 0 chr5 53086006 53086101 -99451158 - ID_B1 SINE B4 -8 216 122 1 990 324 125 0 0 chr5 53086237 53086301 -99450958 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 1 990 675 261 64 93 chr5 53086403 53086616 -99450643 - L1M5 LINE L1 -368 5811 5591 1 990 242 217 133 0 chr5 53086616 53086676 -99450583 + ID4_ SINE ID 3 70 -13 1 990 675 261 64 93 chr5 53086676 53086805 -99450454 - L1M5 LINE L1 -589 5590 5479 1 990 1254 27 0 0 chr5 53086806 53086952 -99450307 + B1_Mm SINE Alu 2 147 0 1 990 222 177 36 48 chr5 53087483 53087566 -99449693 + (TTATA)n Simple_repeat Simple_repeat 3 84 0 1 990 327 49 0 0 chr5 53087566 53087607 -99449652 + (ATATG)n Simple_repeat Simple_repeat 5 45 0 1 990 770 165 0 8 chr5 53087607 53087735 -99449524 - B3 SINE B2 -88 128 2 1 990 408 229 25 33 chr5 53087735 53087857 -99449402 + BLACKJACK DNA AcHobo 2256 2376 -568 1 990 615 296 57 23 chr5 53087874 53088160 -99449099 - MLT1B LTR MaLR -10 457 82 1 990 270 167 0 62 chr5 53088175 53088239 -99449020 + B1_Mur4 SINE Alu 90 149 -1 1 990 251 246 18 0 chr5 53088321 53088378 -99448881 + B1_Mus2 SINE Alu 43 100 -47 1 990 327 85 0 0 chr5 53088514 53088561 -99448698 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 990 1176 82 0 0 chr5 53089061 53089207 -99448052 - B1_Mus1 SINE Alu 0 148 3 1 990 902 122 0 7 chr5 53089592 53089741 -99447518 + (TTTC)n Simple_repeat Simple_repeat 4 151 0 1 990 1767 120 11 0 chr5 53089779 53090045 -99447214 - Lx2 LINE L1 0 6997 6729 1 990 28 48 0 0 chr5 53090139 53090181 -99447078 + AT_rich Low_complexity Low_complexity 1 42 0 1 990 1382 95 11 0 chr5 53092108 53092298 -99444961 - B2_Mm1t SINE B2 -1 192 1 1 990 23 33 0 0 chr5 53095593 53095623 -99441636 + AT_rich Low_complexity Low_complexity 1 30 0 1 990 302 317 15 73 chr5 53096600 53096843 -99440416 - MERVL_2A-int LTR ERVL -1650 4111 3835 1 990 437 309 49 99 chr5 53096855 53097423 -99439836 - MYSERV6-int LTR ERVK -3091 5868 5329 1 990 282 265 0 0 chr5 53097640 53097708 -99439551 - MERVL_2A-int LTR ERVL -2723 2944 2877 1 990 22372 76 12 8 chr5 53098461 53102615 -99434644 - Lx3_Mus LINE L1 0 7009 2842 1 990 1223 98 39 14 chr5 53102749 53102956 -99434303 - RLTR9E LTR ERVK 0 409 198 1 990 324 175 0 0 chr5 53102976 53103039 -99434220 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 990 291 202 0 0 chr5 53103086 53103190 -99434069 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 990 1519 92 4 36 chr5 53103252 53103499 -99433760 - Lx LINE L1 -3 6651 6413 1 990 235 290 54 0 chr5 53104330 53104423 -99432836 + RMER30 DNA MER1_type 1 98 -104 1 990 1719 26 0 0 chr5 53104444 53104637 -99432622 + B2_Mm1a SINE B2 1 193 0 1 990 233 280 27 0 chr5 53104667 53104742 -99432517 - Charlie12 DNA MER1_type -2766 107 31 1 990 254 250 18 53 chr5 53104769 53104883 -99432376 - L1MA9 LINE L1 -37 6275 6166 1 990 1238 161 8 90 chr5 53106225 53106336 -99430923 + URR1B DNA MER1_type 1 102 -123 1 990 863 159 50 22 chr5 53106336 53106516 -99430743 - B2_Mm2 SINE B2 -8 187 3 1 990 1238 161 8 90 chr5 53106516 53106649 -99430610 + URR1B DNA MER1_type 103 225 0 1 990 234 91 0 0 chr5 53107742 53107775 -99429484 + (T)n Simple_repeat Simple_repeat 1 33 0 1 990 1177 63 0 0 chr5 53107779 53107921 -99429338 - B1_Mm SINE Alu -5 142 1 1 990 262 310 138 81 chr5 53108190 53108450 -99428809 + MLT1L LTR MaLR 224 498 -112 1 990 628 274 69 135 chr5 53108453 53108757 -99428502 - MTE2b LTR MaLR -95 284 1 1 990 311 297 59 8 chr5 53109615 53109734 -99427525 + ID_B1 SINE B4 84 208 -16 1 990 383 252 0 65 chr5 53109739 53109862 -99427397 + MTC LTR MaLR 6 120 -301 1 990 423 78 0 0 chr5 53109870 53109934 -99427325 + (T)n Simple_repeat Simple_repeat 1 64 0 1 990 684 206 52 0 chr5 53109934 53110070 -99427189 - B1_Mus1 SINE Alu 0 148 6 1 990 543 217 0 17 chr5 53110078 53110195 -99427064 + MTC LTR MaLR 109 223 -198 1 990 300 229 0 0 chr5 53110191 53110252 -99427007 + B1_Mur3 SINE Alu 73 133 -16 1 990 268 271 0 0 chr5 53110252 53110311 -99426948 + GA-rich Low_complexity Low_complexity 3 61 0 1 990 1257 152 5 5 chr5 53110323 53110541 -99426718 + MTC LTR MaLR 196 413 -8 1 990 3078 260 104 3 chr5 53110871 53111739 -99425520 - Lx8 LINE L1 -122 7351 6397 1 990 499 108 0 0 chr5 53111919 53111993 -99425266 - B1_Mur4 SINE Alu -10 140 67 1 990 227 195 57 68 chr5 53111999 53112087 -99425172 - PB1D10 SINE Alu -3 114 28 1 990 217 296 92 46 chr5 53112463 53112594 -99424665 + MER5B DNA MER1_type 7 143 -35 2 990 347 60 20 0 chr5 53112754 53112804 -99424455 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 2 990 299 200 368 0 chr5 53112822 53112917 -99424342 + B1_Mm SINE Alu 2 131 -16 2 990 234 0 0 0 chr5 53112918 53112944 -99424315 + (T)n Simple_repeat Simple_repeat 1 26 0 2 990 892 88 0 0 chr5 53112950 53113075 -99424184 + B1_Mus1 SINE Alu 19 143 -5 2 990 254 240 172 37 chr5 53113192 53113326 -99423933 - RMER20B LTR ERVK -264 363 212 2 990 1390 167 14 0 chr5 53113643 53113865 -99423394 - URR1B DNA MER1_type 0 225 1 2 990 298 250 279 0 chr5 53114224 53114328 -99422931 - B1_Mur2 SINE Alu -16 133 1 2 990 242 240 122 64 chr5 53114393 53114549 -99422710 - MTEa LTR MaLR -14 365 201 2 990 304 228 39 107 chr5 53114715 53114818 -99422441 - MTEa LTR MaLR -283 96 1 2 990 4472 20 0 0 chr5 53114912 53115405 -99421854 + MT2_Mm LTR ERVL 1 493 0 2 990 218 95 24 0 chr5 53115746 53115788 -99421471 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 2 990 387 60 0 0 chr5 53116667 53116717 -99420542 + (TCCC)n Simple_repeat Simple_repeat 1 50 0 2 990 542 276 159 43 chr5 53117077 53117334 -99419925 + B4A SINE B4 3 289 -3 2 990 649 306 116 11 chr5 53117564 53117927 -99419332 + MER89 LTR ERV1 145 545 -14 2 990 405 86 0 0 chr5 53117932 53117990 -99419269 + (GGA)n Simple_repeat Simple_repeat 3 60 0 2 990 304 0 0 0 chr5 53118837 53118880 -99418379 + L1Md_T LINE L1 6540 6582 0 2 990 374 274 40 76 chr5 53119190 53119347 -99417912 + MLT1A LTR MaLR 3 159 -215 2 990 3403 68 54 7 chr5 53119710 53120170 -99417089 - Lx3_Mus LINE L1 0 7009 6528 2 990 4448 63 3 10 chr5 53120170 53120772 -99416487 + Lx3_Mus LINE L1 5326 5921 -1060 2 990 552 160 0 0 chr5 53120772 53120872 -99416387 + GA-rich Low_complexity Low_complexity 2 101 0 2 990 4169 85 35 0 chr5 53120872 53121449 -99415810 + Lx3_Mus LINE L1 5909 6505 -504 2 990 578 271 167 6 chr5 53121630 53121972 -99415287 + MLT2C1 LTR ERVL 1 397 0 2 990 324 277 35 18 chr5 53122127 53122241 -99415018 - LTR48 LTR ERV1 -83 704 589 2 990 383 137 53 40 chr5 53122234 53122310 -99414949 + ID_B1 SINE B4 78 154 -70 2 990 423 0 0 0 chr5 53122311 53122358 -99414901 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 990 243 0 0 0 chr5 53122953 53122980 -99414279 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 990 525 266 14 7 chr5 53123007 53123147 -99414112 + RSINE1 SINE B4 4 144 -21 2 990 324 0 0 0 chr5 53123151 53123187 -99414072 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 990 305 282 25 25 chr5 53123495 53123615 -99413644 + MTD LTR MaLR 1 120 -299 2 990 479 204 27 18 chr5 53123723 53123833 -99413426 - B3 SINE B2 -99 117 7 2 990 295 318 18 18 chr5 53123872 53123981 -99413278 - Lx8 LINE L1 -7 7466 7358 2 990 750 217 263 115 chr5 53124025 53124390 -99412869 - MTD LTR MaLR 0 419 1 2 990 313 307 115 29 chr5 53124433 53124641 -99412618 + MIRb SINE MIR 29 254 -14 2 990 495 270 44 27 chr5 53125271 53125454 -99411805 + ORR1E LTR MaLR 30 215 -144 2 990 238 253 28 128 chr5 53125539 53125648 -99411611 + ORR1E LTR MaLR 282 379 0 2 990 546 294 6 6 chr5 53126014 53126195 -99411064 + Charlie2a DNA MER1_type 1519 1699 -1162 2 990 822 198 105 21 chr5 53126200 53126391 -99410868 + B3 SINE B2 1 207 -9 2 990 1194 82 0 0 chr5 53126416 53126563 -99410696 + B1_Mus2 SINE Alu 1 147 0 2 990 991 116 20 20 chr5 53126896 53127046 -99410213 - B1_Mur4 SINE Alu 0 150 1 2 990 331 317 56 38 chr5 53127054 53127267 -99409992 + Charlie2a DNA MER1_type 2051 2267 -594 2 990 493 339 97 37 chr5 53127283 53127635 -99409624 + L1MEf LINE L1 103 475 -5661 2 990 472 171 29 0 chr5 53127789 53127894 -99409365 + (CATA)n Simple_repeat Simple_repeat 1 108 0 2 990 1752 194 197 7 chr5 53128085 53128527 -99408732 - RLTR11A2 LTR ERVK -1 526 1 2 990 462 253 72 52 chr5 53128600 53128850 -99408409 + L1MEf LINE L1 1004 1258 -4984 2 990 393 222 0 82 chr5 53128853 53128951 -99408308 + B3 SINE B2 3 92 -124 2 990 469 180 0 20 chr5 53129034 53129187 -99408072 + RMER17A LTR ERVK 303 452 -299 2 990 203 111 89 0 chr5 53129187 53129232 -99408027 + A-rich Low_complexity Low_complexity 5 53 0 2 990 288 340 107 50 chr5 53129355 53129693 -99407566 + ORR1E LTR MaLR 2 358 -1 2 990 1016 60 66 7 chr5 53129860 53130011 -99407248 + B2_Mm2 SINE B2 1 160 -35 2 990 209 108 0 26 chr5 53130011 53130049 -99407210 + (TAA)n Simple_repeat Simple_repeat 3 39 0 2 990 918 277 82 28 chr5 53130358 53131081 -99406178 + L1MEf LINE L1 1660 2429 -3717 2 990 368 232 0 0 chr5 53131120 53131189 -99406070 + RSINE1 SINE B4 66 134 -31 2 990 541 186 189 24 chr5 53131386 53131513 -99405746 + B1_Mur4 SINE Alu 3 150 0 2 990 711 247 24 0 chr5 53131654 53131820 -99405439 - MTD LTR MaLR -249 170 1 2 990 312 292 107 100 chr5 53131828 53132044 -99405215 + L1MEf LINE L1 2854 3040 -3106 2 990 1183 48 0 7 chr5 53132044 53132190 -99405069 - B1_Mus2 SINE Alu 0 147 3 2 990 236 292 107 101 chr5 53132190 53132412 -99404847 + L1MEf LINE L1 3041 3295 -2851 2 990 198 103 0 0 chr5 53132714 53132743 -99404516 + (CCCCG)n Simple_repeat Simple_repeat 5 33 0 2 990 198 103 0 0 chr5 53133830 53133859 -99403400 + (T)n Simple_repeat Simple_repeat 1 29 0 2 990 580 254 41 21 chr5 53135286 53135412 -99401847 + B1F1 SINE Alu 1 132 -17 2 990 225 0 0 0 chr5 53135412 53135437 -99401822 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2 990 580 254 41 21 chr5 53135437 53135455 -99401804 + B1F1 SINE Alu 133 148 -1 2 990 596 229 201 27 chr5 53135473 53135635 -99401624 + B3 SINE B2 1 198 -18 2 990 180 0 0 0 chr5 53135635 53135655 -99401604 + (TAAAA)n Simple_repeat Simple_repeat 5 24 0 2 990 596 229 201 27 chr5 53135655 53135676 -99401583 + B3 SINE B2 199 216 0 2 990 350 285 20 40 chr5 53135905 53136055 -99401204 + B1F SINE Alu 1 147 -2 2 990 243 235 149 47 chr5 53136898 53137005 -99400254 + B2_Mm2 SINE B2 51 168 -27 2 990 21 36 0 0 chr5 53137026 53137054 -99400205 + AT_rich Low_complexity Low_complexity 1 28 0 2 990 216 0 0 0 chr5 53137117 53137141 -99400118 + (CATA)n Simple_repeat Simple_repeat 4 27 0 2 990 765 203 108 36 chr5 53137577 53137771 -99399488 + B3 SINE B2 1 208 -8 2 990 207 300 68 68 chr5 53138226 53138344 -99398915 - L2a LINE L2 0 3426 3309 2 990 199 300 0 0 chr5 53138399 53138459 -99398800 - L2a LINE L2 -539 2880 2821 2 990 311 287 36 54 chr5 53138556 53138777 -99398482 - L2a LINE L2 -812 2607 2391 2 990 421 209 9 28 chr5 53138876 53138984 -99398275 + B4 SINE B4 107 212 -80 2 990 440 242 84 39 chr5 53139002 53139157 -99398102 + RSINE1 SINE B4 2 163 -2 2 990 459 215 356 0 chr5 53139195 53139344 -99397915 + B3 SINE B2 1 202 -14 2 990 288 171 157 12 chr5 53140503 53140586 -99396673 - PB1D10 SINE Alu -8 109 15 2 990 418 264 47 0 chr5 53140548 53140677 -99396582 - ID_B1 SINE B4 -89 135 1 2 990 249 253 146 22 chr5 53140758 53140847 -99396412 - PB1D7 SINE Alu -9 111 12 2 990 204 40 0 0 chr5 53140869 53140894 -99396365 + (T)n Simple_repeat Simple_repeat 1 25 0 2 990 30 77 0 0 chr5 53140902 53140967 -99396292 + AT_rich Low_complexity Low_complexity 1 65 0 2 990 402 287 0 42 chr5 53141039 53141159 -99396100 - PB1D10 SINE Alu -1 116 2 2 990 230 272 19 107 chr5 53141070 53141173 -99396086 - MT2B2 LTR ERVL -340 244 151 2 990 231 291 0 0 chr5 53141280 53141335 -99395924 - L2b LINE L2 -15 3360 3306 2 990 227 333 0 0 chr5 53141457 53141517 -99395742 + PB1 SINE Alu 44 103 -24 2 990 181 293 160 0 chr5 53143251 53143326 -99393933 + MIRb SINE MIR 178 264 -4 2 990 21 57 0 0 chr5 53143452 53143487 -99393772 + AT_rich Low_complexity Low_complexity 1 35 0 2 990 24 32 0 0 chr5 53143786 53143817 -99393442 + AT_rich Low_complexity Low_complexity 1 31 0 2 990 189 0 0 0 chr5 53144827 53144848 -99392411 + (CTGTG)n Simple_repeat Simple_repeat 4 24 0 2 990 217 239 60 0 chr5 53144956 53145023 -99392236 + MER5A DNA MER1_type 119 189 0 2 990 348 266 11 11 chr5 53145262 53145357 -99391902 + MIR SINE MIR 162 256 -6 2 990 1624 157 138 12 chr5 53145408 53145749 -99391510 - MTC LTR MaLR -10 411 28 2 990 458 246 103 0 chr5 53146060 53146186 -99391073 - ID_B1 SINE B4 -4 220 82 2 990 1040 258 48 4 chr5 53146278 53146550 -99390709 - B4 SINE B4 -4 288 5 2 990 1762 171 58 3 chr5 53146926 53147271 -99389988 - ORR1D1 LTR MaLR 0 374 11 2 990 606 263 114 16 chr5 53147551 53147744 -99389515 + B3 SINE B2 1 212 -4 2 990 899 125 28 7 chr5 53148616 53148761 -99388498 - B1_Mus1 SINE Alu 0 148 1 2 990 213 261 0 0 chr5 53148804 53148850 -99388409 + CT-rich Low_complexity Low_complexity 3 48 0 2 990 792 148 8 0 chr5 53148851 53148979 -99388280 - B1_Mus2 SINE Alu -17 130 2 2 990 1194 68 0 0 chr5 53149265 53149412 -99387847 - B1_Mus2 SINE Alu 0 147 1 2 990 3383 92 12 12 chr5 53149621 53150117 -99387142 - Lx LINE L1 -3 6651 6156 2 990 440 221 21 90 chr5 53151043 53151187 -99386072 - MTEa LTR MaLR -6 373 240 2 990 461 273 25 0 chr5 53151198 53151319 -99385940 + B1_Mm SINE Alu 8 131 -16 2 990 465 206 186 16 chr5 53152883 53153066 -99384193 - B3 SINE B2 -1 215 2 2 990 327 302 48 40 chr5 53155145 53155269 -99381990 - Tigger7 DNA MER2_type -2362 129 5 2 990 372 273 0 0 chr5 53155540 53155628 -99381631 + PB1D10 SINE Alu 25 112 -5 2 990 202 214 24 0 chr5 53155628 53155670 -99381589 + G-rich Low_complexity Low_complexity 4 46 0 2 990 312 273 54 83 chr5 53155895 53156063 -99381196 - B4 SINE B4 -120 172 10 2 990 23 0 0 0 chr5 53156151 53156174 -99381085 + AT_rich Low_complexity Low_complexity 1 23 0 2 990 263 28 0 27 chr5 53156354 53156391 -99380868 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 2 990 489 214 19 10 chr5 53156409 53156513 -99380746 - B1_Mur2 SINE Alu -6 143 39 2 990 227 216 0 56 chr5 53156465 53156519 -99380740 - MT2B LTR ERVL -361 240 190 3 990 647 168 67 30 chr5 53156577 53156712 -99380547 + B1_Mur1 SINE Alu 2 141 -8 3 990 479 269 20 40 chr5 53156692 53156843 -99380416 + RSINE1 SINE B4 6 153 -12 3 990 1191 49 7 0 chr5 53156876 53157020 -99380239 + B1_Mus2 SINE Alu 2 146 -1 3 990 189 94 0 0 chr5 53157277 53157309 -99379950 + (A)n Simple_repeat Simple_repeat 1 32 0 3 990 1184 49 14 0 chr5 53157359 53157503 -99379756 - B1_Mus2 SINE Alu -1 146 1 3 990 526 162 11 10 chr5 53157749 53157852 -99379407 + B1_Mus2 SINE Alu 24 125 -22 3 990 562 246 15 15 chr5 53157874 53158010 -99379249 + B1_Mur1 SINE Alu 1 136 -13 3 990 400 176 10 10 chr5 53158177 53158280 -99378979 + (TA)n Simple_repeat Simple_repeat 1 103 0 3 990 236 231 15 15 chr5 53160680 53160746 -99376513 - MTEb LTR MaLR -109 270 205 3 990 592 170 26 66 chr5 53161205 53161356 -99375903 + ORR1B1 LTR MaLR 41 185 -209 3 990 508 155 0 40 chr5 53161347 53161448 -99375811 + ORR1B1 LTR MaLR 298 394 0 3 990 4011 78 27 14 chr5 53162147 53162707 -99374552 - RMER2 LTR ERV1 0 567 1 3 990 243 308 39 0 chr5 53163085 53163163 -99374096 - ID4_ SINE ID -2 81 1 3 990 315 71 0 0 chr5 53163163 53163205 -99374054 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 3 990 1400 198 53 26 chr5 53163222 53163359 -99373900 + RMER6A LTR ERVK 2 204 -552 3 990 378 257 80 0 chr5 53163359 53163472 -99373787 + B1_Mm SINE Alu 13 134 -13 3 990 1400 198 53 26 chr5 53163472 53163842 -99373417 + RMER6A LTR ERVK 205 756 0 3 990 221 301 36 12 chr5 53163860 53163944 -99373315 - PB1D10 SINE Alu -31 86 1 3 990 783 294 36 36 chr5 53163991 53164213 -99373046 - B4A SINE B4 0 292 71 3 990 219 211 184 0 chr5 53164226 53164243 -99373016 - ID_B1 SINE B4 -126 98 9 3 990 263 186 102 0 chr5 53164243 53164302 -99372957 - tRNA-Ala-GCY_ tRNA tRNA -8 67 3 3 990 731 244 44 19 chr5 53164330 53164535 -99372724 - B3 SINE B2 0 216 7 3 990 338 316 101 37 chr5 53164733 53164917 -99372342 + L1M5 LINE L1 4165 4365 -1781 3 990 213 39 0 0 chr5 53164917 53164943 -99372316 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 990 338 316 101 37 chr5 53164943 53165054 -99372205 + L1M5 LINE L1 4366 4479 -1667 3 990 230 292 14 14 chr5 53165071 53165144 -99372115 + ID4_ SINE ID 10 82 -1 3 990 270 256 65 32 chr5 53165380 53165473 -99371786 + L1M5 LINE L1 4816 4911 -1235 3 990 388 174 255 0 chr5 53165735 53165833 -99371426 - MTD LTR MaLR -2 417 295 3 990 439 274 32 25 chr5 53167283 53167440 -99369819 - RLTR14 LTR ERV1 0 382 225 3 990 3326 33 15 3 chr5 53167736 53168127 -99369132 + MTA_Mm LTR MaLR 1 396 0 3 990 573 301 80 0 chr5 53169039 53169215 -99368044 - ID_B1 SINE B4 -34 190 1 3 990 1586 48 5 0 chr5 53169459 53169648 -99367611 + B2_Mm1a SINE B2 2 191 -2 3 990 905 191 112 10 chr5 53169861 53170067 -99367192 - ORR1D1 LTR MaLR 0 374 148 3 990 409 253 6 161 chr5 53170083 53170156 -99367103 - B1_Mus2 SINE Alu 0 147 88 3 990 1221 48 0 0 chr5 53170156 53170303 -99366956 + B1_Mm SINE Alu 1 147 0 3 990 412 238 11 41 chr5 53170303 53170403 -99366856 - B1_Mm SINE Alu -60 87 1 3 990 807 196 19 7 chr5 53170404 53170558 -99366701 - ORR1D1 LTR MaLR -218 156 1 3 990 616 257 0 13 chr5 53171082 53171232 -99366027 + B1F1 SINE Alu 2 149 0 3 990 1411 62 15 35 chr5 53171329 53171528 -99365731 - B2_Mm2 SINE B2 0 195 1 3 990 2252 145 49 18 chr5 53171725 53172175 -99365084 + RMER6A LTR ERVK 293 756 0 3 990 226 346 0 0 chr5 53172997 53173075 -99364184 + Kanga2_a DNA Tc2 4 81 -807 3 990 1112 269 137 29 chr5 53173235 53173725 -99363534 - L1MD LINE L1 -1410 4736 4194 3 990 433 240 63 16 chr5 53173790 53173917 -99363342 + B1F SINE Alu 3 135 -14 3 990 225 0 0 0 chr5 53173919 53173944 -99363315 + (CAGAA)n Simple_repeat Simple_repeat 2 26 0 3 990 303 49 0 0 chr5 53174145 53174186 -99363073 + (TGGG)n Simple_repeat Simple_repeat 3 43 0 3 990 291 54 0 0 chr5 53175454 53175491 -99361768 + (T)n Simple_repeat Simple_repeat 1 37 0 3 990 696 147 163 0 chr5 53175491 53175620 -99361639 - B1_Mur4 SINE Alu 0 150 1 3 990 625 284 51 15 chr5 53175630 53175827 -99361432 - B3A SINE B2 -12 204 1 3 990 535 146 20 19 chr5 53176052 53176157 -99361102 - B1_Mur4 SINE Alu -19 131 25 3 990 234 62 0 0 chr5 53176286 53176318 -99360941 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 990 426 267 94 70 chr5 53176501 53176737 -99360522 - L1MB4 LINE L1 -33 6147 5896 3 990 1199 54 0 0 chr5 53176737 53176885 -99360374 - B1_Mus1 SINE Alu 0 148 1 3 990 426 267 94 70 chr5 53176885 53176946 -99360313 - L1MB4 LINE L1 -285 5895 5843 3 990 892 250 5 0 chr5 53176949 53177145 -99360114 - B3 SINE B2 -19 197 1 3 990 287 274 42 10 chr5 53177153 53177249 -99360010 - PB1D7 SINE Alu -1 119 21 3 990 406 209 25 34 chr5 53177562 53177681 -99359578 + PB1D9 SINE Alu 1 118 -2 3 990 676 252 67 92 chr5 53178297 53178499 -99358760 - RLTR15 LTR ERVK -39 320 105 3 990 246 32 0 0 chr5 53178499 53178530 -99358729 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 3 990 676 252 67 92 chr5 53178530 53178655 -99358604 - RLTR15 LTR ERVK -255 104 1 3 990 832 176 7 20 chr5 53179337 53179488 -99357771 - B1_Mur3 SINE Alu 0 149 1 3 990 1029 233 29 0 chr5 53179519 53179729 -99357530 - B3 SINE B2 0 216 1 3 990 441 248 26 17 chr5 53180483 53180598 -99356661 - PB1D10 SINE Alu -1 116 1 3 990 1189 226 113 12 chr5 53181552 53181888 -99355371 - ORR1D2 LTR MaLR 0 370 1 3 990 988 283 104 9 chr5 53182021 53182339 -99354920 - MTE2b LTR MaLR -8 371 24 3 990 600 291 51 24 chr5 53183984 53184237 -99353022 + L1MB7 LINE L1 5914 6173 -11 3 990 709 163 97 51 chr5 53184320 53184495 -99352764 - B2_Mm2 SINE B2 -11 184 2 3 990 216 0 0 0 chr5 53184805 53184829 -99352430 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 990 353 287 32 71 chr5 53185169 53185323 -99351936 - B4A SINE B4 -143 149 2 3 990 1168 168 51 5 chr5 53186030 53186246 -99351013 - URR1A DNA MER1_type 0 226 1 3 990 236 159 119 60 chr5 53186374 53186441 -99350818 - PB1D7 SINE Alu -3 117 47 3 990 236 159 119 60 chr5 53186451 53186518 -99350741 - PB1D7 SINE Alu -3 117 47 3 990 287 252 61 70 chr5 53186528 53186643 -99350616 - PB1D10 SINE Alu -3 114 1 3 990 948 201 25 10 chr5 53188716 53188912 -99348347 - B3 SINE B2 -8 208 10 3 990 25 31 0 0 chr5 53188920 53188952 -99348307 + AT_rich Low_complexity Low_complexity 1 32 0 3 990 744 237 30 8 chr5 53189120 53189352 -99347907 + B4A SINE B4 39 286 -6 3 990 933 232 0 0 chr5 53189574 53189755 -99347504 - B3A SINE B2 -16 182 2 3 990 509 242 89 6 chr5 53190018 53190176 -99347083 - L1MB7 LINE L1 -198 5986 5816 3 990 543 273 67 15 chr5 53190308 53190515 -99346744 - MIR SINE MIR -2 266 34 3 990 261 0 0 0 chr5 53191407 53191436 -99345823 + (A)n Simple_repeat Simple_repeat 1 29 0 3 990 353 280 111 21 chr5 53191514 53191704 -99345555 - L1MB7 LINE L1 -83 6101 5895 3 990 308 213 85 54 chr5 53191966 53192060 -99345199 + B1F SINE Alu 1 75 -74 3 990 451 198 47 87 chr5 53192857 53192984 -99344275 + B1F SINE Alu 27 148 -1 3 990 216 210 111 16 chr5 53193182 53193245 -99344014 + L3b LINE CR1 173 241 -241 3 990 339 219 130 28 chr5 53193375 53193483 -99343776 - MIRb SINE MIR -131 137 19 3 990 369 0 0 0 chr5 53193630 53193671 -99343588 + (T)n Simple_repeat Simple_repeat 1 41 0 3 990 1157 75 0 0 chr5 53193671 53193818 -99343441 - B1_Mus1 SINE Alu 0 148 2 3 990 25 0 0 0 chr5 53193827 53193852 -99343407 + AT_rich Low_complexity Low_complexity 1 25 0 3 990 224 170 38 0 chr5 53194323 53194376 -99342883 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 990 486 272 107 18 chr5 53194448 53194638 -99342621 + B3A SINE B2 1 189 -27 3 990 1231 71 0 0 chr5 53194761 53194931 -99342328 + B2_Mm2 SINE B2 1 170 -25 3 990 236 276 119 17 chr5 53195046 53195164 -99342095 - B1F1 SINE Alu -10 139 10 3 990 1474 68 21 0 chr5 53195307 53195498 -99341761 + B2_Mm2 SINE B2 1 195 0 3 990 362 251 13 34 chr5 53195765 53195810 -99341449 - ID4 SINE ID -17 135 6 3 990 314 262 11 56 chr5 53195810 53195899 -99341360 - ID_B1 SINE B4 -134 90 6 3 990 351 277 8 51 chr5 53195946 53196064 -99341195 - B1F2 SINE Alu -3 146 34 3 990 339 280 0 0 chr5 53196396 53196471 -99340788 + B1_Mus2 SINE Alu 1 75 -72 3 990 210 71 0 0 chr5 53196471 53196499 -99340760 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 990 24 32 0 0 chr5 53198351 53198382 -99338877 + AT_rich Low_complexity Low_complexity 1 31 0 3 990 1228 198 111 6 chr5 53198716 53199031 -99338228 - MTD LTR MaLR -14 405 58 3 990 24 32 0 0 chr5 53199448 53199479 -99337780 + AT_rich Low_complexity Low_complexity 1 31 0 3 990 197 319 27 14 chr5 53201168 53201241 -99336018 + MIRm SINE MIR 24 97 -179 3 990 200 189 0 0 chr5 53201256 53201293 -99335966 + (ATG)n Simple_repeat Simple_repeat 3 39 0 3 990 1228 41 0 0 chr5 53202011 53202158 -99335101 + B1_Mus2 SINE Alu 1 147 0 3 990 225 0 0 0 chr5 53202158 53202183 -99335076 + (A)n Simple_repeat Simple_repeat 1 25 0 3 990 234 0 0 0 chr5 53202754 53202780 -99334479 + (T)n Simple_repeat Simple_repeat 1 26 0 3 990 1240 40 0 0 chr5 53202780 53202928 -99334331 - B1_Mus1 SINE Alu 0 148 1 3 990 956 295 65 27 chr5 53204175 53204576 -99332683 - L3 LINE CR1 -1 4488 4073 3 990 443 227 90 9 chr5 53205094 53205205 -99332054 + Lx8 LINE L1 6936 7055 -418 4 990 579 259 38 125 chr5 53205259 53205572 -99331687 + Lx8 LINE L1 7184 7469 -4 4 990 874 72 0 16 chr5 53205576 53205703 -99331556 - B1_Mur3 SINE Alu 0 149 25 4 990 1175 68 0 0 chr5 53205743 53205889 -99331370 + B1_Mm SINE Alu 2 147 0 4 990 344 22 0 22 chr5 53205891 53205937 -99331322 + (GAAAA)n Simple_repeat Simple_repeat 2 46 0 4 990 559 223 106 20 chr5 53206130 53206281 -99330978 - MER5A DNA MER1_type 0 189 26 4 990 372 43 0 0 chr5 53207673 53207719 -99329540 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 990 704 281 7 0 chr5 53207720 53207873 -99329386 - RSINE1 SINE B4 -9 156 3 4 990 299 280 16 48 chr5 53208077 53208201 -99329058 - MIR SINE MIR -10 252 133 4 990 1009 284 65 17 chr5 53208403 53208819 -99328440 - L1MC1 LINE L1 -188 6145 5710 4 990 1250 34 0 0 chr5 53209048 53209196 -99328063 + B1_Mus1 SINE Alu 1 148 0 4 990 185 306 48 0 chr5 53209597 53209659 -99327600 - MIR3 SINE MIR -29 179 115 4 990 875 200 31 5 chr5 53211266 53211462 -99325797 - B3 SINE B2 -15 201 1 4 990 26 50 0 0 chr5 53211863 53211903 -99325356 + AT_rich Low_complexity Low_complexity 1 40 0 4 990 1186 57 0 0 chr5 53212061 53212201 -99325058 - B1_Mus2 SINE Alu -7 140 1 4 990 247 183 111 11 chr5 53212228 53212322 -99324937 - PB1D10 SINE Alu -1 126 7 4 990 284 242 92 31 chr5 53212399 53212497 -99324762 + PB1D9 SINE Alu 1 104 -16 4 990 180 0 0 0 chr5 53212698 53212718 -99324541 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 990 775 202 70 22 chr5 53212786 53212974 -99324285 - B3 SINE B2 0 216 18 4 991 701 247 65 11 chr5 53215409 53215593 -99321666 - RMER30 DNA MER1_type -2 200 7 4 991 1189 61 0 0 chr5 53215593 53215741 -99321518 + B1_Mus1 SINE Alu 1 148 0 4 991 305 279 156 63 chr5 53216718 53216955 -99320304 + B4A SINE B4 28 286 -6 4 991 513 0 0 0 chr5 53216988 53217045 -99320214 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 4 991 368 259 0 20 chr5 53217053 53217199 -99320060 + (CATATA)n Simple_repeat Simple_repeat 5 147 0 4 991 309 26 0 0 chr5 53217300 53217338 -99319921 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 991 266 320 0 104 chr5 53217935 53218050 -99319209 + PB1D10 SINE Alu 6 108 -9 4 991 231 286 0 0 chr5 53218182 53218238 -99319021 + B3A SINE B2 16 71 -127 4 991 360 0 0 0 chr5 53218271 53218311 -99318948 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 991 1007 116 14 0 chr5 53218347 53218493 -99318766 - B1_Mur4 SINE Alu 0 150 3 4 991 1458 254 48 15 chr5 53218767 53219159 -99318100 - MTC LTR MaLR -14 407 3 4 991 432 280 62 23 chr5 53219209 53219337 -99317922 + RSINE1 SINE B4 2 134 -31 4 991 2774 58 12 0 chr5 53220332 53220674 -99316585 - ORR1A1 LTR MaLR 0 346 1 4 991 13088 73 8 26 chr5 53220674 53222498 -99314761 - ORR1A1-int LTR MaLR 0 1792 1 4 991 2529 62 0 0 chr5 53222502 53222840 -99314419 - ORR1A1 LTR MaLR -8 338 1 4 991 2055 95 16 19 chr5 53223272 53223593 -99313666 + ORR1A2 LTR MaLR 6 325 -2 4 991 3131 124 51 0 chr5 53223595 53224128 -99313131 + ORR1A2-int LTR MaLR 1 560 -1403 4 991 236 108 27 0 chr5 53224121 53224132 -99313127 + MT2B LTR ERVL 249 260 -341 4 991 366 208 0 38 chr5 53224132 53224212 -99313047 + B1_Mus2 SINE Alu 4 80 -67 4 991 1488 110 4 0 chr5 53224196 53224432 -99312827 - ORR1A2 LTR MaLR -90 237 1 4 991 228 303 6 55 chr5 53225106 53225270 -99311989 + (CCCCG)n Simple_repeat Simple_repeat 2 157 0 4 991 859 211 23 24 chr5 53226497 53226703 -99310556 + B3 SINE B2 1 195 0 4 991 465 237 8 106 chr5 53227110 53227242 -99310017 - PB1D9 SINE Alu 0 120 2 4 991 230 0 0 32 chr5 53227660 53227691 -99309568 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 991 973 53 8 0 chr5 53227691 53227822 -99309437 - B1_Mus1 SINE Alu -9 139 8 4 991 333 278 43 0 chr5 53227918 53228033 -99309226 - RMER30 DNA MER1_type -1 201 82 4 991 207 209 0 0 chr5 53228051 53228094 -99309165 + T-rich Low_complexity Low_complexity 1 43 0 4 991 318 292 52 0 chr5 53228094 53228190 -99309069 - RMER30 DNA MER1_type -100 102 2 4 991 240 86 0 0 chr5 53228250 53228285 -99308974 + (T)n Simple_repeat Simple_repeat 1 35 0 4 991 532 282 14 14 chr5 53228663 53228807 -99308452 + RSINE1 SINE B4 3 146 -19 4 991 469 248 8 33 chr5 53228974 53229095 -99308164 - PB1D7 SINE Alu -2 118 1 4 991 228 67 0 0 chr5 53229820 53229850 -99307409 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 991 773 184 179 0 chr5 53229851 53230041 -99307218 - Lx4B LINE L1 0 7058 6835 4 991 1873 160 102 2 chr5 53230137 53230539 -99306720 + Lx9 LINE L1 7203 7644 0 4 991 497 282 45 6 chr5 53230575 53230732 -99306527 - RSINE1 SINE B4 0 165 3 4 991 239 221 40 105 chr5 53231127 53231203 -99306056 - B1F2 SINE Alu -62 87 17 4 991 892 223 41 5 chr5 53232070 53232264 -99304995 + B3 SINE B2 4 204 -12 4 991 243 0 0 0 chr5 53232402 53232429 -99304830 + (T)n Simple_repeat Simple_repeat 1 27 0 4 991 1207 27 0 52 chr5 53232429 53232583 -99304676 - B1_Mm SINE Alu 0 147 2 4 991 1217 55 0 0 chr5 53233704 53233850 -99303409 - B1_Mus2 SINE Alu 0 147 2 4 991 210 37 0 0 chr5 53235472 53235499 -99301760 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 4 991 1203 48 7 0 chr5 53235499 53235645 -99301614 - B1_Mus2 SINE Alu 0 147 1 4 991 471 71 23 12 chr5 53236022 53236108 -99301151 + (TCC)n Simple_repeat Simple_repeat 3 89 0 4 991 224 242 65 0 chr5 53236108 53236122 -99301137 - ID_B1 SINE B4 -65 159 94 4 991 234 250 0 0 chr5 53236122 53236170 -99301089 - B1F1 SINE Alu -89 60 13 4 991 1203 152 16 0 chr5 53236939 53237130 -99300129 + B2_Mm2 SINE B2 2 195 0 4 991 381 319 18 9 chr5 53238038 53238152 -99299107 + PB1D7 SINE Alu 1 115 -5 4 991 294 301 157 78 chr5 53238160 53238351 -99298908 + B3 SINE B2 3 208 -8 4 991 1372 79 16 10 chr5 53238372 53238564 -99298695 + B2_Mm1t SINE B2 1 193 0 4 991 253 210 24 12 chr5 53239128 53239210 -99298049 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 991 290 250 26 53 chr5 53240872 53240948 -99296311 - ID4_ SINE ID -9 74 1 4 991 672 209 35 14 chr5 53241254 53241395 -99295864 + B1_Mur1 SINE Alu 1 144 -5 4 991 232 208 0 19 chr5 53241442 53241496 -99295763 + ID SINE ID 2 54 -170 4 991 198 71 0 0 chr5 53242235 53242263 -99294996 + (TTGTG)n Simple_repeat Simple_repeat 5 32 0 4 991 304 308 127 41 chr5 53242641 53242885 -99294374 - HAL1 LINE L1 -873 1634 1370 4 991 827 201 0 0 chr5 53242948 53243092 -99294167 + B1_Mus1 SINE Alu 5 148 0 4 991 831 21 0 0 chr5 53243219 53243316 -99293943 + (TTTC)n Simple_repeat Simple_repeat 4 100 0 4 991 402 195 0 25 chr5 53243440 53243519 -99293740 - B1F SINE Alu -5 144 68 4 991 1087 70 28 14 chr5 53243585 53243730 -99293529 - B1_Mus2 SINE Alu 0 147 1 4 991 318 302 11 74 chr5 53243762 53243937 -99293322 - L2a LINE L2 -54 3372 3209 4 991 477 286 49 44 chr5 53243954 53244137 -99293122 + MER2 DNA MER2_type 8 191 -154 4 991 1306 206 149 9 chr5 53244189 53244517 -99292742 - ORR1D1 LTR MaLR 0 374 1 4 991 315 323 107 16 chr5 53244649 53244901 -99292358 - L2a LINE L2 -390 3029 2755 4 991 1030 246 75 103 chr5 53245723 53246112 -99291147 - MTE2a LTR MaLR 0 379 2 4 991 211 73 48 24 chr5 53246583 53246625 -99290634 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 4 991 237 324 18 9 chr5 53247181 53247293 -99289966 + MER2 DNA MER2_type 94 206 -139 4 991 1491 67 10 5 chr5 53247471 53247665 -99289594 - B2_Mm2 SINE B2 0 195 1 4 991 290 300 58 32 chr5 53248879 53249034 -99288225 - Charlie1a DNA MER1_type -235 1220 1062 4 991 985 282 44 143 chr5 53249065 53249219 -99288040 - Charlie1a DNA MER1_type -486 969 819 4 991 414 0 0 0 chr5 53249219 53249265 -99287994 + (TGG)n Simple_repeat Simple_repeat 1 46 0 4 991 985 282 44 143 chr5 53249265 53249863 -99287396 - Charlie1a DNA MER1_type -637 818 292 4 991 247 282 148 35 chr5 53250647 53250816 -99286443 - MER21B LTR ERV1 -128 735 548 4 991 457 288 131 40 chr5 53250851 53251126 -99286133 - MER21B LTR ERV1 -398 465 166 4 991 2970 38 75 8 chr5 53251234 53251609 -99285650 - MTB LTR MaLR 0 400 1 4 991 473 205 70 18 chr5 53251858 53251972 -99285287 + B3A SINE B2 1 120 -78 4 991 702 101 0 0 chr5 53253682 53253791 -99283468 + (TG)n Simple_repeat Simple_repeat 1 109 0 4 991 641 248 43 0 chr5 53253795 53253936 -99283323 - B3A SINE B2 -38 160 14 4 991 310 124 374 19 chr5 53254295 53254402 -99282857 - B1_Mus2 SINE Alu -2 145 1 4 991 862 159 7 7 chr5 53254499 53254645 -99282614 - B1_Mur2 SINE Alu -2 147 2 4 991 359 269 0 0 chr5 53255983 53256061 -99281198 - PB1D10 SINE Alu -33 84 7 4 991 279 226 67 0 chr5 53256114 53256202 -99281057 - PB1D10 SINE Alu -1 119 18 4 991 254 323 0 0 chr5 53256361 53256426 -99280833 - ID4_ SINE ID -11 72 8 4 991 811 183 0 0 chr5 53256456 53256598 -99280661 - B1_Mur1 SINE Alu -6 143 2 4 991 350 218 24 106 chr5 53256610 53256733 -99280526 - PB1 SINE Alu -2 125 13 4 991 252 264 14 14 chr5 53258173 53258246 -99279013 + PB1D10 SINE Alu 14 86 -31 4 991 270 0 0 0 chr5 53258873 53258903 -99278356 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 4 991 527 162 22 10 chr5 53258925 53259042 -99278217 - B1_Mur3 SINE Alu 0 149 2 4 991 312 264 33 11 chr5 53259046 53259138 -99278121 - PB1D10 SINE Alu 0 117 24 4 991 238 196 71 0 chr5 53259143 53259199 -99278060 + B2_Mm2 SINE B2 1 60 -135 4 991 779 224 46 0 chr5 53259551 53259725 -99277534 + B3 SINE B2 27 208 -8 4 991 1203 61 0 0 chr5 53259748 53259896 -99277363 + B1_Mus1 SINE Alu 1 148 0 5 991 301 270 52 147 chr5 53259934 53260125 -99277134 - MTEa LTR MaLR -1 378 206 5 991 266 264 108 9 chr5 53262260 53262371 -99274888 + RMER15 LTR ERVL 402 523 -52 5 991 209 11 0 155 chr5 53263357 53263460 -99273799 + (CACCG)n Simple_repeat Simple_repeat 3 89 0 5 991 204 265 8 128 chr5 53263589 53263706 -99273553 - MIRb SINE MIR -122 146 44 5 991 271 314 79 30 chr5 53263753 53263917 -99273342 - MIR SINE MIR -62 200 29 5 991 710 268 21 38 chr5 53264671 53264908 -99272351 - B4A SINE B4 -58 234 2 5 991 831 234 0 45 chr5 53264986 53265187 -99272072 + MTEb LTR MaLR 78 269 -110 5 991 323 333 17 26 chr5 53265179 53265296 -99271963 - MTE2a LTR MaLR -244 135 20 5 991 622 234 99 48 chr5 53265311 53265603 -99271656 - L1M2 LINE L1 -1583 4560 4254 5 991 390 306 34 29 chr5 53265649 53265824 -99271435 - L1M2 LINE L1 -1886 4257 4082 5 991 569 152 124 0 chr5 53265824 53265929 -99271330 + PB1D9 SINE Alu 1 118 -2 5 991 351 212 0 0 chr5 53265971 53266051 -99271208 + GA-rich Low_complexity Low_complexity 3 82 0 5 991 1318 277 96 25 chr5 53266072 53266601 -99270658 - L1M2 LINE L1 -2048 4095 3529 5 991 342 67 0 0 chr5 53266655 53266700 -99270559 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 991 340 150 0 0 chr5 53266700 53266760 -99270499 - ORR1B1 LTR MaLR -334 60 1 5 991 417 303 45 6 chr5 53266760 53266928 -99270331 - MT2A LTR ERVL -303 230 56 5 991 482 251 113 42 chr5 53266940 53267027 -99270232 - L1M2 LINE L1 -2715 3428 3343 5 991 848 70 324 7 chr5 53267027 53267172 -99270087 + B2_Mm2 SINE B2 2 192 -3 5 991 482 251 113 42 chr5 53267172 53267367 -99269892 - L1M2 LINE L1 -2801 3342 3126 5 991 235 296 100 18 chr5 53267374 53267484 -99269775 - PB1D7 SINE Alu 0 120 2 5 991 1275 115 0 45 chr5 53267701 53267901 -99269358 - B2_Mm2 SINE B2 -1 194 4 5 991 1345 203 87 14 chr5 53268018 53268285 -99268974 - ORR1D2 LTR MaLR 0 370 80 5 991 240 35 0 0 chr5 53268285 53268314 -99268945 + (CCA)n Simple_repeat Simple_repeat 2 30 0 5 991 1345 203 87 14 chr5 53268314 53268391 -99268868 - ORR1D2 LTR MaLR -291 79 2 5 991 1485 229 60 18 chr5 53268439 53268786 -99268473 - MTD LTR MaLR -8 411 44 5 991 1694 121 193 32 chr5 53268786 53269102 -99268157 - ORR1B2 LTR MaLR 0 367 1 5 991 1485 229 60 18 chr5 53269102 53269137 -99268122 - MTD LTR MaLR -376 43 13 5 991 367 250 89 17 chr5 53269190 53269369 -99267890 - L1M5 LINE L1 -351 5822 5631 5 991 189 354 12 0 chr5 53269915 53269997 -99267262 + MIR SINE MIR 31 113 -95 5 991 201 196 0 0 chr5 53270158 53270214 -99267045 + G-rich Low_complexity Low_complexity 1 56 0 5 991 207 0 0 0 chr5 53270402 53270425 -99266834 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 991 369 299 38 30 chr5 53270996 53271127 -99266132 + RSINE1 SINE B4 34 165 0 5 991 423 132 0 0 chr5 53271148 53271216 -99266043 + (CTA)n Simple_repeat Simple_repeat 3 70 0 5 991 200 308 15 30 chr5 53271919 53271986 -99265273 + L2a LINE L2 3315 3380 -46 5 991 304 176 22 45 chr5 53272088 53272177 -99265082 - B3 SINE B2 0 216 130 5 991 325 244 78 0 chr5 53272187 53272277 -99264982 - B4A SINE B4 -76 216 120 5 991 408 244 59 50 chr5 53272572 53272781 -99264478 - B3A SINE B2 -15 201 2 5 991 180 276 99 41 chr5 53272966 53273087 -99264172 + MIRb SINE MIR 46 173 -95 5 991 743 235 7 13 chr5 53274309 53274464 -99262795 + RSINE1 SINE B4 11 164 -1 5 991 747 267 16 10 chr5 53274653 53274846 -99262413 - ORR1E LTR MaLR -161 198 5 5 991 476 282 136 33 chr5 53275225 53275362 -99261897 + MTEa LTR MaLR 5 169 -210 5 991 180 0 0 0 chr5 53275362 53275382 -99261877 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 5 991 476 282 136 33 chr5 53275382 53275486 -99261773 + MTEa LTR MaLR 170 270 -109 5 991 883 166 176 6 chr5 53276826 53276857 -99260402 - B3 SINE B2 0 216 187 5 991 438 20 0 0 chr5 53276857 53276908 -99260351 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 991 883 166 176 6 chr5 53276908 53277058 -99260201 - B3 SINE B2 -30 186 5 5 991 230 180 0 47 chr5 53278156 53278220 -99259039 + T-rich Low_complexity Low_complexity 6 66 0 5 991 872 52 0 9 chr5 53278220 53278336 -99258923 - B1_Mus1 SINE Alu 0 148 34 5 991 297 129 78 31 chr5 53278279 53278343 -99258916 - 4.5SRNA scRNA scRNA -8 86 20 5 991 207 156 22 22 chr5 53278607 53278653 -99258606 - L3 LINE CR1 -2261 2228 2183 5 991 243 0 0 0 chr5 53278719 53278746 -99258513 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 5 991 305 280 0 13 chr5 53278760 53278836 -99258423 - ID4 SINE ID -6 77 3 5 991 440 326 52 16 chr5 53278988 53279181 -99258078 + RMER15 LTR ERVL 332 531 -44 5 991 411 78 0 0 chr5 53279181 53279245 -99258014 + (GGA)n Simple_repeat Simple_repeat 2 65 0 5 991 1201 232 39 25 chr5 53279371 53279650 -99257609 - B4 SINE B4 -8 284 2 5 991 298 303 38 22 chr5 53280298 53280424 -99256835 + PB1D10 SINE Alu 1 126 -21 5 991 293 261 0 30 chr5 53280430 53280497 -99256762 + ID4 SINE ID 1 65 -18 5 991 404 161 41 14 chr5 53280522 53280667 -99256592 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 5 991 313 271 0 91 chr5 53280674 53280926 -99256333 - RMER17D LTR ERVK -420 469 241 5 991 454 208 56 9 chr5 53281119 53281226 -99256033 - PB1D7 SINE Alu -1 119 8 5 991 188 307 209 45 chr5 53281861 53282062 -99255197 - L2c LINE L2 -17 3370 3137 5 991 2311 137 108 2 chr5 53282100 53282407 -99254852 + RMER4A LTR ERVK 6 346 -120 5 991 678 47 0 0 chr5 53282407 53282493 -99254766 + (TC)n Simple_repeat Simple_repeat 1 86 0 5 991 2311 137 108 2 chr5 53282493 53282602 -99254657 + RMER4A LTR ERVK 347 465 -1 5 991 282 371 58 19 chr5 53282915 53283069 -99254190 - MIRb SINE MIR -74 194 35 5 991 356 294 135 34 chr5 53283759 53283907 -99253352 + RSINE1 SINE B4 3 165 0 5 991 1678 92 8 7 chr5 53284073 53284383 -99252876 + MTB_Mm LTR MaLR 1 419 0 5 991 239 325 0 0 chr5 53284724 53284807 -99252452 + BC1_Mm scRNA scRNA 15 97 -55 5 991 215 282 21 145 chr5 53284807 53284869 -99252390 + ID_B1 SINE B4 15 141 -83 5 991 560 268 60 22 chr5 53285915 53286098 -99251161 + B3A SINE B2 1 190 -8 5 991 944 262 9 0 chr5 53286133 53286343 -99250916 - B3 SINE B2 -3 213 2 5 991 265 119 0 0 chr5 53286480 53286522 -99250737 - ID_B1 SINE B4 0 224 183 5 991 23 33 0 0 chr5 53286538 53286568 -99250691 + AT_rich Low_complexity Low_complexity 1 30 0 5 991 41948 8 0 2 chr5 53286920 53294086 -99243173 - L1Md_A LINE L1 0 6582 1 5 991 264 292 93 10 chr5 53294106 53294203 -99243056 + MT2A LTR ERVL 13 117 -416 5 991 874 297 81 10 chr5 53294137 53294433 -99242826 + MTE2a LTR MaLR 52 368 -11 5 991 318 248 14 164 chr5 53294433 53294573 -99242686 - ID_B1 SINE B4 -84 140 22 5 991 692 267 15 49 chr5 53294883 53295088 -99242171 + B3A SINE B2 1 198 0 5 991 25 0 0 0 chr5 53295153 53295178 -99242081 + AT_rich Low_complexity Low_complexity 1 25 0 5 991 183 129 0 0 chr5 53295466 53295497 -99241762 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 991 791 151 63 28 chr5 53295500 53295643 -99241616 - B1_Mur3 SINE Alu -1 148 1 5 991 701 168 32 71 chr5 53295650 53295804 -99241455 - B1_Mur3 SINE Alu -1 148 1 5 991 273 257 14 41 chr5 53296196 53296269 -99240990 - Charlie12 DNA MER1_type 0 2873 2803 5 991 475 252 0 0 chr5 53296278 53296381 -99240878 + RMER30 DNA MER1_type 99 201 -1 5 991 299 25 0 24 chr5 53296426 53296467 -99240792 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 991 24 53 0 0 chr5 53297174 53297212 -99240047 + AT_rich Low_complexity Low_complexity 1 38 0 5 991 1837 120 63 28 chr5 53297542 53297860 -99239399 + ORR1A4 LTR MaLR 1 329 0 5 991 524 298 78 16 chr5 53297863 53298054 -99239205 - Tigger7 DNA MER2_type -10 2481 2279 5 991 399 312 62 0 chr5 53298097 53298225 -99239034 - Tigger7 DNA MER2_type -2117 374 239 5 991 401 93 0 0 chr5 53298237 53298291 -99238968 + B3 SINE B2 1 54 -162 5 991 270 309 71 74 chr5 53298503 53298800 -99238459 + RMER10A LTR ERVL 122 417 -25 5 991 738 0 0 0 chr5 53298886 53298968 -99238291 + (TTTC)n Simple_repeat Simple_repeat 4 85 0 5 991 228 355 9 0 chr5 53298979 53299089 -99238170 - HAL1 LINE L1 -1151 1356 1246 5 991 322 304 133 58 chr5 53299280 53299521 -99237738 - HAL1 LINE L1 -1637 870 612 5 991 187 91 182 0 chr5 53299833 53299877 -99237382 - L2b LINE L2 -217 3158 3107 5 991 1600 31 11 0 chr5 53300497 53300657 -99236602 + B2_Mm1a SINE B2 1 160 -33 5 991 315 0 0 0 chr5 53300657 53300692 -99236567 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 5 991 1600 31 11 0 chr5 53300692 53300722 -99236537 + B2_Mm1a SINE B2 161 192 -1 5 991 680 226 6 88 chr5 53300737 53300852 -99236407 + B1_Mus2 SINE Alu 1 112 -35 5 991 3228 60 8 2 chr5 53300852 53301250 -99236009 + MTB LTR MaLR 1 400 0 5 991 680 226 6 88 chr5 53301250 53301294 -99235965 + B1_Mus2 SINE Alu 113 147 0 5 991 231 233 80 27 chr5 53302038 53302113 -99235146 - MIR SINE MIR -109 99 21 5 991 298 309 0 23 chr5 53303230 53303316 -99233943 - B3A SINE B2 -88 110 27 5 991 205 323 62 5 chr5 53303833 53303932 -99233327 + L2a LINE L2 3283 3391 -35 5 991 245 225 134 24 chr5 53303960 53304042 -99233217 + L2a LINE L2 3330 3420 -6 5 991 218 32 32 0 chr5 53304776 53304807 -99232452 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 991 752 280 47 47 chr5 53304815 53305092 -99232167 - B4 SINE B4 -11 281 5 5 991 694 260 304 9 chr5 53305425 53305645 -99231614 + B4A SINE B4 2 286 -6 5 991 294 29 0 0 chr5 53306293 53306328 -99230931 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 991 374 242 82 62 chr5 53306654 53306751 -99230508 + PB1D10 SINE Alu 18 116 -1 5 991 625 303 18 109 chr5 53306848 53307133 -99230126 - MLT1B LTR MaLR -131 259 1 5 991 289 313 0 29 chr5 53307761 53307863 -99229396 - MIRb SINE MIR -82 186 88 5 991 189 94 0 0 chr5 53307917 53307949 -99229310 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 991 1905 136 93 12 chr5 53307954 53308275 -99228984 - ORR1B1 LTR MaLR -46 348 2 6 991 258 331 29 44 chr5 53308314 53308450 -99228809 - RMER15 LTR ERVL -71 504 371 6 991 300 306 204 15 chr5 53308550 53308746 -99228513 - Lx8 LINE L1 -304 7169 6937 6 991 606 133 24 2 chr5 53309195 53309311 -99227948 - L1Md_F2 LINE L1 -585 6051 5933 6 991 597 110 0 42 chr5 53309431 53309573 -99227686 + (TG)n Simple_repeat Simple_repeat 2 137 0 6 991 848 106 0 38 chr5 53309585 53309771 -99227488 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 991 846 125 0 36 chr5 53309810 53310237 -99227022 + (TG)n Simple_repeat Simple_repeat 1 411 0 6 991 2619 152 100 24 chr5 53310361 53310526 -99226733 - RLTR11A LTR ERVK 0 528 355 6 991 3355 43 2 2 chr5 53310526 53310922 -99226337 - MTA_Mm LTR MaLR 0 396 1 6 991 2619 152 100 24 chr5 53310922 53311247 -99226012 - RLTR11A LTR ERVK -174 354 1 6 991 698 113 70 0 chr5 53311390 53311505 -99225754 - B1_Mus2 SINE Alu -11 136 14 6 991 220 260 0 30 chr5 53311509 53311608 -99225651 + CT-rich Low_complexity Low_complexity 4 99 0 6 991 731 274 6 6 chr5 53311608 53311784 -99225475 + MTEb LTR MaLR 203 378 -1 6 991 375 338 122 14 chr5 53311886 53312108 -99225151 - RMER15-int LTR ERVL -2458 2541 2296 6 991 1014 314 117 39 chr5 53312213 53312809 -99224450 - RMER15-int LTR ERVL -2848 2151 1509 6 991 1098 116 0 24 chr5 53312945 53313113 -99224146 + URR1A DNA MER1_type 59 222 -4 6 991 302 241 17 85 chr5 53313396 53313514 -99223745 - RMER15-int LTR ERVL -3367 1632 1523 6 991 210 162 0 0 chr5 53313517 53313554 -99223705 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 6 991 685 123 130 8 chr5 53313576 53313707 -99223552 - B1_Mur4 SINE Alu 0 150 4 6 991 820 293 53 10 chr5 53313707 53314007 -99223252 - RMER15-int LTR ERVL -3474 1525 1213 6 991 733 342 74 23 chr5 53314103 53314456 -99222803 - RMER15-int LTR ERVL -4607 392 22 6 991 2397 93 37 67 chr5 53314540 53314944 -99222315 - MTB_Mm LTR MaLR 0 407 16 6 991 424 211 0 133 chr5 53315183 53315303 -99221956 - MT2B LTR ERVL -323 278 175 6 991 616 179 19 9 chr5 53315200 53315307 -99221952 - B1_Mus2 SINE Alu -33 114 7 6 991 581 274 73 24 chr5 53315330 53315536 -99221723 - B3 SINE B2 0 216 1 6 991 329 164 14 0 chr5 53315575 53315648 -99221611 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 991 2659 35 0 0 chr5 53315720 53316030 -99221229 - L1Md_A LINE L1 0 6582 6273 6 991 415 220 200 36 chr5 53316790 53316955 -99220304 + L1MC1 LINE L1 6141 6332 -1 6 991 337 283 36 30 chr5 53316990 53317099 -99220160 + PB1D10 SINE Alu 20 123 -26 6 991 202 210 99 110 chr5 53317180 53317271 -99219988 - L3 LINE CR1 -3660 829 740 6 991 226 219 90 45 chr5 53318052 53318119 -99219140 - L3 LINE CR1 -3690 799 730 6 991 1014 278 46 4 chr5 53318228 53318488 -99218771 - B4A SINE B4 -20 272 2 6 991 760 274 74 22 chr5 53318535 53318804 -99218455 + RMER5 LTR ERV1 242 524 -10 6 991 1157 234 26 38 chr5 53319032 53319378 -99217881 + RLTR15 LTR ERVK 2 343 -16 6 991 258 319 0 14 chr5 53319452 53319525 -99217734 + MIR SINE MIR 77 148 -114 6 991 719 272 108 0 chr5 53319541 53319736 -99217523 + ID_B1 SINE B4 9 224 0 6 991 681 291 33 14 chr5 53320642 53320855 -99216404 + ID_B1 SINE B4 1 217 -7 6 991 182 312 41 51 chr5 53321244 53321342 -99215917 + MIRb SINE MIR 110 206 -62 6 991 22 0 0 0 chr5 53321347 53321369 -99215890 + AT_rich Low_complexity Low_complexity 1 22 0 6 991 417 189 63 53 chr5 53321570 53321665 -99215594 + ID_B1 SINE B4 121 216 -8 6 991 246 208 0 20 chr5 53321622 53321671 -99215588 + B1_Mur3 SINE Alu 65 112 -37 6 991 21 0 0 0 chr5 53322417 53322438 -99214821 + AT_rich Low_complexity Low_complexity 1 21 0 6 991 865 190 43 43 chr5 53323039 53323248 -99214011 + B3 SINE B2 3 211 -5 6 991 1013 238 109 87 chr5 53323516 53323884 -99213375 - MTEb LTR MaLR 0 379 4 6 991 706 207 28 0 chr5 53323886 53324031 -99213228 + B1_Mur4 SINE Alu 2 150 0 6 991 210 37 0 0 chr5 53324038 53324065 -99213194 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 991 426 167 0 0 chr5 53324065 53324173 -99213086 + GA-rich Low_complexity Low_complexity 1 108 0 6 991 477 150 0 91 chr5 53324366 53324476 -99212783 + RMER10A LTR ERVL 343 442 0 6 991 2330 148 74 2 chr5 53324664 53325057 -99212202 + MTC LTR MaLR 1 421 0 6 991 278 347 61 0 chr5 53325215 53325313 -99211946 - BC1_Mm scRNA scRNA -48 104 1 6 991 329 284 0 147 chr5 53325442 53325534 -99211725 - L1MC LINE L1 -2225 3921 3847 6 991 835 210 94 0 chr5 53325534 53325715 -99211544 - B3A SINE B2 0 198 1 6 991 329 284 0 147 chr5 53325715 53325779 -99211480 - L1MC LINE L1 -2300 3846 3788 6 991 239 277 96 0 chr5 53325767 53325850 -99211409 + L1M3 LINE L1 4125 4215 -1925 6 991 449 211 124 90 chr5 53325886 53326063 -99211196 + L1MB8 LINE L1 5994 6176 -2 6 991 365 297 59 61 chr5 53326296 53326854 -99210405 + L1M5 LINE L1 3607 4128 -2018 6 991 1304 102 11 0 chr5 53326863 53327040 -99210219 + B2_Mm1t SINE B2 1 179 -14 6 991 402 108 28 2 chr5 53327088 53327197 -99210062 + B2_Mm2 SINE B2 48 195 0 6 991 229 300 43 0 chr5 53327315 53327385 -99209874 + ID4 SINE ID 1 73 -10 6 991 30 27 0 0 chr5 53327419 53327456 -99209803 + AT_rich Low_complexity Low_complexity 1 37 0 6 991 304 165 39 49 chr5 53327521 53327623 -99209636 + A-rich Low_complexity Low_complexity 2 102 0 6 991 1217 267 85 45 chr5 53327627 53328097 -99209162 - Lx7 LINE L1 -390 7306 6818 6 991 318 241 77 77 chr5 53328101 53328218 -99209041 + B1_Mur4 SINE Alu 26 142 -8 6 991 469 276 89 0 chr5 53328227 53328350 -99208909 + RSINE1 SINE B4 2 135 -30 6 991 796 205 129 21 chr5 53328416 53328610 -99208649 + B3 SINE B2 1 215 -1 6 991 650 116 188 0 chr5 53328676 53328788 -99208471 + B1_Mus1 SINE Alu 1 133 -15 6 991 224 304 229 55 chr5 53328917 53329110 -99208149 + MIRb SINE MIR 8 237 -25 6 991 355 307 43 50 chr5 53329138 53329299 -99207960 - Charlie7a DNA MER1_type -107 165 6 6 991 435 38 0 0 chr5 53329429 53329482 -99207777 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 991 207 100 0 0 chr5 53330161 53330191 -99207068 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 991 593 40 20 20 chr5 53330194 53330296 -99206963 - L1Md_F3 LINE L1 0 6584 6483 6 991 1132 103 6 0 chr5 53330420 53330576 -99206683 + B2_Mm2 SINE B2 1 157 -38 6 991 223 72 23 23 chr5 53330578 53330621 -99206638 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 991 360 0 0 0 chr5 53330621 53330660 -99206599 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 991 235 348 34 37 chr5 53330693 53330860 -99206399 + MIRc SINE MIR 2 173 -95 6 991 477 0 0 0 chr5 53330862 53330915 -99206344 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 991 521 228 26 0 chr5 53331083 53331197 -99206062 + PB1D7 SINE Alu 3 119 -1 6 991 429 308 70 0 chr5 53331638 53331781 -99205478 - MIRb SINE MIR -33 235 83 6 991 318 238 143 0 chr5 53331860 53331944 -99205315 - L1MEg LINE L1 -4143 1941 1846 6 991 1135 102 0 0 chr5 53332968 53333125 -99204134 + B2_Mm2 SINE B2 1 157 -38 6 991 258 105 0 0 chr5 53333127 53333165 -99204094 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 991 322 262 123 0 chr5 53333171 53333293 -99203966 - L1ME1 LINE L1 -266 5913 5777 6 991 211 355 48 89 chr5 53333358 53333627 -99203632 - L2c LINE L2 0 3387 3130 6 991 268 356 38 34 chr5 53334299 53334508 -99202751 - L2c LINE L2 -934 2485 2276 6 991 417 218 112 56 chr5 53334562 53334669 -99202590 - B1F1 SINE Alu 0 127 15 6 991 383 202 23 8 chr5 53334818 53334948 -99202311 + (CA)n Simple_repeat Simple_repeat 1 132 0 6 991 898 36 9 0 chr5 53335286 53335398 -99201861 + B1_Mus1 SINE Alu 36 148 0 6 991 342 0 0 0 chr5 53335426 53335464 -99201795 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 6 991 405 293 9 0 chr5 53335942 53336058 -99201201 - PB1D10 SINE Alu 0 117 1 6 991 269 272 152 0 chr5 53336241 53336333 -99200926 + MIR SINE MIR 41 146 -116 6 991 686 249 18 30 chr5 53337191 53337357 -99199902 - RSINE1 SINE B4 0 165 2 6 991 199 79 53 0 chr5 53337400 53337438 -99199821 + (TGG)n Simple_repeat Simple_repeat 1 40 0 6 991 356 210 24 47 chr5 53337642 53337727 -99199532 - PB1D10 SINE Alu -1 116 34 6 991 191 148 0 36 chr5 53337777 53337833 -99199426 + (TCTG)n Simple_repeat Simple_repeat 3 56 0 6 991 626 301 82 39 chr5 53337883 53338163 -99199096 + B4 SINE B4 1 292 0 6 991 561 246 81 70 chr5 53338188 53338240 -99199019 - Charlie5 DNA MER1_type -80 2544 2499 6 991 1417 72 16 6 chr5 53338240 53338422 -99198837 + B2_Mm2 SINE B2 2 185 -10 6 991 561 246 81 70 chr5 53338422 53338653 -99198606 - Charlie5 DNA MER1_type -126 2498 2258 6 991 873 170 0 0 chr5 53338658 53338799 -99198460 + B1_Mus2 SINE Alu 1 141 -6 6 991 373 260 95 44 chr5 53338873 53339010 -99198249 + B1F SINE Alu 1 144 -5 6 991 344 309 145 41 chr5 53339010 53339045 -99198214 + B4A SINE B4 86 275 -17 6 991 1455 274 137 46 chr5 53339108 53339870 -99197389 - Charlie5 DNA MER1_type -331 2293 1463 6 991 443 283 18 9 chr5 53339867 53339981 -99197278 + B4A SINE B4 10 124 -168 6 991 298 248 0 81 chr5 53339999 53340148 -99197111 + (CAGTG)n Simple_repeat Simple_repeat 1 137 0 6 991 885 251 20 15 chr5 53340180 53340378 -99196881 + B4A SINE B4 91 289 -3 6 991 201 39 0 0 chr5 53340380 53340406 -99196853 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 991 619 81 62 6 chr5 53340444 53340605 -99196654 + (CA)n Simple_repeat Simple_repeat 1 170 0 6 991 332 59 43 14 chr5 53340631 53340700 -99196559 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 991 1392 238 179 16 chr5 53340706 53341146 -99196113 + Lx8 LINE L1 6960 7471 -2 6 991 1337 271 29 77 chr5 53341171 53341730 -99195529 - Charlie5 DNA MER1_type -1240 1384 853 6 991 365 253 0 62 chr5 53341701 53341798 -99195461 - PB1D10 SINE Alu -26 91 1 6 991 314 22 0 0 chr5 53341923 53341968 -99195291 - Lx2 LINE L1 -4 6993 6949 6 991 1054 205 24 5 chr5 53342120 53342326 -99194933 + B3 SINE B2 1 210 -6 6 991 180 0 0 0 chr5 53342412 53342432 -99194827 + (TC)n Simple_repeat Simple_repeat 1 20 0 6 991 180 0 0 0 chr5 53342432 53342451 -99194808 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 991 414 0 0 0 chr5 53342451 53342496 -99194763 + (GA)n Simple_repeat Simple_repeat 2 47 0 7 991 842 271 54 46 chr5 53342505 53342745 -99194514 - B4 SINE B4 -24 268 27 7 991 253 203 141 0 chr5 53343270 53343334 -99193925 - PB1D9 SINE Alu -16 104 32 7 991 388 295 21 0 chr5 53343493 53343588 -99193671 - B1_Mur1 SINE Alu -13 136 40 7 991 493 301 104 91 chr5 53344402 53344632 -99192627 - MLT1A LTR MaLR -3 405 173 7 991 579 96 0 0 chr5 53345541 53345624 -99191635 + (TCCCC)n Simple_repeat Simple_repeat 4 86 0 7 991 195 42 0 0 chr5 53345630 53345654 -99191605 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 991 216 97 0 0 chr5 53345654 53345684 -99191575 + (TATG)n Simple_repeat Simple_repeat 1 31 0 7 991 591 256 147 45 chr5 53345697 53345942 -99191317 - B4 SINE B4 -14 278 9 7 123 383 241 87 81 chr5 53346168 53346353 -99190906 + MLT1C LTR MaLR 6 191 -276 7 992 3132 67 13 8 chr5 53346740 53347134 -99190125 - MTA_Mm LTR MaLR 0 396 1 7 992 182 293 0 0 chr5 53347558 53347616 -99189643 - MIRc SINE MIR -135 133 76 7 992 2345 112 81 0 chr5 53347623 53347980 -99189279 + ORR1B1 LTR MaLR 1 386 -8 7 992 207 230 243 50 chr5 53348141 53348326 -99188933 + MIR SINE MIR 32 236 -26 7 992 261 250 0 0 chr5 53348508 53348572 -99188687 - ID2 SINE ID -10 73 10 7 992 1551 196 97 9 chr5 53349097 53349437 -99187822 + ORR1D1 LTR MaLR 3 372 -2 7 992 1316 92 17 0 chr5 53349636 53349810 -99187449 + B2_Mm2 SINE B2 2 178 -17 7 992 858 76 0 0 chr5 53349813 53349932 -99187327 + (GAAA)n Simple_repeat Simple_repeat 3 121 0 7 992 3362 91 19 4 chr5 53350099 53350573 -99186686 - L1_Mus4 LINE L1 -1 6635 6155 7 992 1032 205 57 0 chr5 53350931 53351141 -99186118 + URR1A DNA MER1_type 5 226 0 7 992 225 242 0 15 chr5 53351375 53351442 -99185817 + G-rich Low_complexity Low_complexity 1 66 0 7 992 444 211 27 9 chr5 53351453 53351563 -99185696 + RSINE1 SINE B4 4 115 -50 7 992 3417 71 9 11 chr5 53351597 53352050 -99185209 + L1_Mus1 LINE L1 6115 6566 -1 7 992 798 260 64 84 chr5 53352189 53352278 -99184981 - B4A SINE B4 -2 290 215 7 992 544 222 0 61 chr5 53352278 53352393 -99184866 - PB1D9 SINE Alu -7 113 6 7 992 798 260 64 84 chr5 53352393 53352549 -99184710 - B4A SINE B4 -2 214 81 7 992 587 176 147 31 chr5 53352749 53352878 -99184381 + B1_Mus2 SINE Alu 3 146 -1 7 992 258 176 54 0 chr5 53353175 53353249 -99184010 + GA-rich Low_complexity Low_complexity 2 79 0 7 992 699 184 20 41 chr5 53353859 53354006 -99183253 + B1F SINE Alu 5 148 -1 7 992 2993 75 17 10 chr5 53354566 53354970 -99182289 + MTB_Mm LTR MaLR 1 407 0 7 992 699 220 19 24 chr5 53355031 53355197 -99182062 + ID_B1 SINE B4 87 244 -48 7 992 231 140 0 0 chr5 53356084 53356134 -99181125 + (T)n Simple_repeat Simple_repeat 1 50 0 7 992 1156 75 7 0 chr5 53356135 53356282 -99180977 - B1_Mus1 SINE Alu 0 148 1 7 992 3754 55 14 25 chr5 53356298 53356780 -99180479 - L1_Mus1 LINE L1 0 6567 6091 7 992 330 293 121 0 chr5 53356805 53356904 -99180355 - PB1D10 SINE Alu -5 112 2 7 992 348 24 0 0 chr5 53356911 53356952 -99180307 + (TCC)n Simple_repeat Simple_repeat 2 42 0 7 992 1272 113 32 0 chr5 53356952 53357138 -99180121 - B2_Mm2 SINE B2 -1 194 3 7 992 468 137 148 55 chr5 53357520 53357640 -99179619 + B1_Mur4 SINE Alu 29 150 0 7 992 602 169 8 0 chr5 53359584 53359702 -99177557 + (CTG)n Simple_repeat Simple_repeat 1 119 0 7 992 326 296 0 0 chr5 53359702 53359773 -99177486 - PB1D7 SINE Alu -9 111 41 7 992 214 353 118 0 chr5 53359848 53359933 -99177326 + MIRm SINE MIR 160 254 -22 7 992 270 0 0 0 chr5 53359944 53359974 -99177285 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 7 992 1442 196 125 15 chr5 53360551 53360888 -99176371 - ORR1D1 LTR MaLR 0 374 1 7 992 788 240 58 71 chr5 53361158 53361367 -99175892 + MTD LTR MaLR 1 206 -213 7 992 635 160 9 0 chr5 53361367 53361473 -99175786 + B1_Mur1 SINE Alu 1 107 -42 7 992 722 131 0 9 chr5 53361515 53361623 -99175636 + B1_Mur4 SINE Alu 43 149 -1 7 992 225 0 0 0 chr5 53361654 53361679 -99175580 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 7 992 735 71 0 0 chr5 53361686 53361784 -99175475 + (GGGAA)n Simple_repeat Simple_repeat 3 100 0 7 992 930 116 0 24 chr5 53361787 53361955 -99175304 + (GAAA)n Simple_repeat Simple_repeat 2 165 0 7 992 369 294 66 40 chr5 53362043 53362195 -99175064 + MER3 DNA MER1_type 6 161 -48 7 992 210 71 0 0 chr5 53362354 53362382 -99174877 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 7 992 426 244 78 0 chr5 53362382 53362472 -99174787 - B1F2 SINE Alu -12 137 41 7 992 311 0 26 0 chr5 53362486 53362525 -99174734 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 992 948 182 29 0 chr5 53362545 53362715 -99174544 + B3 SINE B2 2 176 -40 7 992 2919 87 30 5 chr5 53362744 53363137 -99174122 - MTB_Mm LTR MaLR 0 407 5 7 992 310 311 8 76 chr5 53363250 53363382 -99173877 - ID_B1 SINE B4 -19 205 83 7 992 451 248 60 8 chr5 53363544 53363678 -99173581 + B1F1 SINE Alu 2 142 -7 7 992 411 145 0 0 chr5 53364120 53364189 -99173070 + (TA)n Simple_repeat Simple_repeat 1 69 0 7 992 31 0 0 0 chr5 53364262 53364293 -99172966 + AT_rich Low_complexity Low_complexity 1 31 0 7 992 519 184 0 0 chr5 53364345 53364432 -99172827 - RSINE1 SINE B4 -76 89 3 7 992 316 197 0 43 chr5 53364948 53365008 -99172251 - MTEb LTR MaLR 0 379 323 7 992 334 308 86 40 chr5 53365008 53365160 -99172099 + RSINE1 SINE B4 3 161 -4 7 992 1361 104 0 52 chr5 53365219 53365431 -99171828 - RLTR11B LTR ERVK -1 452 252 7 992 1226 214 102 57 chr5 53365434 53365861 -99171398 - RLTR11A LTR ERVK -18 510 21 7 992 450 277 15 0 chr5 53365862 53365992 -99171267 - MTEb LTR MaLR -80 299 168 7 992 375 341 60 87 chr5 53366031 53366330 -99170929 - B4 SINE B4 0 292 2 7 992 518 228 68 75 chr5 53366330 53366468 -99170791 - MTEb LTR MaLR -192 187 51 7 992 385 274 29 0 chr5 53366500 53366602 -99170657 + ID_B1 SINE B4 117 221 -3 7 992 318 232 94 4 chr5 53367213 53367313 -99169946 + PB1D10 SINE Alu 1 102 -15 7 992 225 250 21 0 chr5 53367347 53367395 -99169864 + tRNA-Ala-GCY_ tRNA tRNA 23 71 -4 7 992 363 301 61 113 chr5 53367470 53367580 -99169679 + L1MA4 LINE L1 5410 5511 -780 7 992 1223 87 0 60 chr5 53367580 53367764 -99169495 + B2_Mm2 SINE B2 4 176 -19 7 992 363 301 61 113 chr5 53367764 53367887 -99169372 + L1MA4 LINE L1 5512 5641 -650 7 992 378 0 0 0 chr5 53367887 53367929 -99169330 + (TA)n Simple_repeat Simple_repeat 1 42 0 7 992 363 301 61 113 chr5 53367929 53368039 -99169220 + L1MA4 LINE L1 5642 5736 -555 7 992 584 128 88 9 chr5 53368047 53368158 -99169101 + B1_Mur2 SINE Alu 19 135 -14 7 992 180 0 0 0 chr5 53368158 53368178 -99169081 + (TAGA)n Simple_repeat Simple_repeat 3 22 0 7 992 887 221 157 4 chr5 53368186 53368422 -99168837 + B4A SINE B4 4 275 -17 7 992 244 291 67 37 chr5 53368461 53368625 -99168634 + L1MA4 LINE L1 5758 5926 -374 7 992 591 203 170 28 chr5 53369648 53369830 -99167429 - B3 SINE B2 -6 210 3 7 992 421 159 7 7 chr5 53369924 53370011 -99167248 + B1_Mus2 SINE Alu 34 147 0 7 992 1220 111 26 26 chr5 53370035 53370066 -99167193 - B2_Mm2 SINE B2 0 195 163 7 992 432 0 0 0 chr5 53370066 53370114 -99167145 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 7 992 1220 111 26 26 chr5 53370114 53370277 -99166982 - B2_Mm2 SINE B2 -33 162 1 7 992 243 333 32 51 chr5 53370450 53370608 -99166651 + MIR SINE MIR 15 169 -93 7 992 214 186 0 0 chr5 53371780 53371823 -99165436 + T-rich Low_complexity Low_complexity 1 43 0 7 992 1284 102 11 0 chr5 53371835 53372012 -99165247 + B2_Mm1t SINE B2 1 179 -14 7 992 360 124 0 39 chr5 53372073 53372140 -99165119 + B2_Mm2 SINE B2 47 109 -107 7 992 477 0 0 0 chr5 53372155 53372208 -99165051 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 7 992 839 117 1 0 chr5 53372217 53372342 -99164917 - B2_Mm2 SINE B2 -66 127 2 7 992 1095 97 7 0 chr5 53372345 53372490 -99164769 - B1_Mus1 SINE Alu 0 148 3 7 992 946 124 89 0 chr5 53372499 53372668 -99164591 - B2_Mm2 SINE B2 -6 189 6 7 992 684 243 0 14 chr5 53372668 53372806 -99164453 + B1_Mur1 SINE Alu 13 148 -1 7 992 261 190 50 33 chr5 53372888 53372948 -99164311 - tRNA-Ala-GCY_ tRNA tRNA -13 62 2 7 992 475 240 0 0 chr5 53372955 53373055 -99164204 - PB1D10 SINE Alu 0 117 18 7 992 219 259 250 35 chr5 53372961 53373077 -99164182 - B4A SINE B4 -71 221 81 7 992 405 0 0 0 chr5 53373804 53373849 -99163410 + (GA)n Simple_repeat Simple_repeat 1 45 0 7 992 194 373 91 0 chr5 53374256 53374366 -99162893 + MIR3 SINE MIR 85 204 -4 7 992 264 233 40 27 chr5 53374447 53374522 -99162737 - RLTR16 LTR ERVK 0 505 430 7 992 2318 190 50 15 chr5 53374520 53374605 -99162654 - RLTR16 LTR ERVK -13 492 413 7 992 356 0 23 0 chr5 53374605 53374649 -99162610 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 992 2318 190 50 15 chr5 53374649 53375038 -99162221 - RLTR16 LTR ERVK -93 412 1 7 992 1519 217 77 12 chr5 53375095 53375435 -99161824 - ORR1D2 LTR MaLR -8 362 1 7 992 498 232 132 3 chr5 53375435 53375570 -99161689 - MTEb LTR MaLR -47 332 163 7 992 942 206 18 41 chr5 53375622 53375840 -99161419 + B3 SINE B2 4 216 0 7 992 692 261 30 110 chr5 53375942 53376179 -99161080 - ID_B1 SINE B4 -1 223 6 7 992 249 214 88 133 chr5 53376187 53376300 -99160959 - ID_B1 SINE B4 -36 188 81 7 992 834 139 29 0 chr5 53376354 53376491 -99160768 + B1_Mur4 SINE Alu 9 149 -1 7 992 557 203 331 0 chr5 53376566 53376714 -99160545 - B3 SINE B2 -18 198 2 8 992 261 109 0 0 chr5 53376758 53376804 -99160455 + (T)n Simple_repeat Simple_repeat 1 46 0 8 992 1142 88 0 0 chr5 53376804 53376951 -99160308 - B1_Mm SINE Alu 0 147 1 8 992 239 29 57 0 chr5 53377891 53377926 -99159333 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 992 664 239 0 14 chr5 53377926 53378066 -99159193 + B1_Mur2 SINE Alu 3 140 -9 8 992 647 178 115 8 chr5 53378087 53378206 -99159053 + B1_Mus1 SINE Alu 3 136 -12 8 992 180 0 0 0 chr5 53378206 53378226 -99159033 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 8 992 344 330 119 10 chr5 53378691 53378893 -99158366 - MIRb SINE MIR -3 265 42 8 992 744 133 67 0 chr5 53378922 53379042 -99158217 - B1_Mus2 SINE Alu -11 136 9 8 992 534 296 38 22 chr5 53378926 53379109 -99158150 - ID_B1 SINE B4 -15 209 24 8 992 317 280 77 86 chr5 53379048 53379165 -99158094 - PB1D9 SINE Alu -3 117 2 8 992 323 200 0 0 chr5 53379166 53379221 -99158038 - ID_B1 SINE B4 -90 134 80 8 992 469 267 0 49 chr5 53379211 53379249 -99158010 - B1F SINE Alu -33 116 80 8 992 2451 151 85 30 chr5 53379249 53379415 -99157844 - RLTR19A LTR ERVK 0 496 314 8 992 339 25 0 0 chr5 53379415 53379455 -99157804 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 992 2451 151 85 30 chr5 53379455 53379758 -99157501 - RLTR19A LTR ERVK -183 313 1 8 992 469 267 0 49 chr5 53379758 53379841 -99157418 - B1F SINE Alu -70 79 1 8 992 200 264 19 0 chr5 53379861 53379914 -99157345 + (TA)n Simple_repeat Simple_repeat 2 55 0 8 992 692 194 28 41 chr5 53379914 53380059 -99157200 - B1_Mur2 SINE Alu -5 144 2 8 992 32 0 0 0 chr5 53380470 53380502 -99156757 + AT_rich Low_complexity Low_complexity 1 32 0 8 992 822 154 51 7 chr5 53380502 53380639 -99156620 - B1_Mur4 SINE Alu -6 144 2 8 992 440 274 28 0 chr5 53380767 53380873 -99156386 - PB1D10 SINE Alu -2 115 7 8 992 555 288 0 7 chr5 53381090 53381230 -99156029 - B1F SINE Alu -10 139 1 8 992 1304 20 0 0 chr5 53381267 53381413 -99155846 + B1_Mm SINE Alu 2 147 0 8 992 234 116 0 0 chr5 53381416 53381459 -99155800 + (A)n Simple_repeat Simple_repeat 1 43 0 8 992 197 244 121 11 chr5 53381488 53381579 -99155680 + MIRb SINE MIR 28 128 -140 8 992 479 299 71 6 chr5 53381646 53381814 -99155445 + B3A SINE B2 5 183 -15 8 992 281 181 164 14 chr5 53381915 53381988 -99155271 + ID_B1 SINE B4 136 219 -5 8 992 322 290 44 25 chr5 53382392 53382501 -99154758 + RSINE1 SINE B4 3 117 -48 8 992 1091 105 3 0 chr5 53382501 53382854 -99154405 + (CA)n Simple_repeat Simple_repeat 1 353 0 8 992 322 290 44 25 chr5 53382854 53382900 -99154359 + RSINE1 SINE B4 118 162 -3 8 992 191 306 0 7 chr5 53382901 53383039 -99154220 + (CA)n Simple_repeat Simple_repeat 1 137 0 8 992 349 98 20 0 chr5 53383083 53383134 -99154125 + HAL1-3A_ME LINE L1 1976 2027 -831 8 992 390 321 97 0 chr5 53383142 53383276 -99153983 + RSINE1 SINE B4 1 147 -18 8 992 320 286 12 0 chr5 53383833 53383917 -99153342 + B1F SINE Alu 1 85 -64 8 992 1242 41 0 7 chr5 53384127 53384275 -99152984 + B1_Mus1 SINE Alu 2 148 0 8 992 306 72 42 28 chr5 53384275 53384346 -99152913 + (CAAAA)n Simple_repeat Simple_repeat 1 72 0 8 992 221 271 16 63 chr5 53384399 53384462 -99152797 + ID SINE ID 8 67 -157 8 992 229 26 26 26 chr5 53384463 53384502 -99152757 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 992 638 191 120 15 chr5 53384504 53384637 -99152622 - B1_Mus1 SINE Alu 0 148 2 8 992 479 234 141 0 chr5 53386109 53386237 -99151022 - B1_Mur2 SINE Alu -1 148 3 8 992 405 324 45 9 chr5 53386440 53386552 -99150707 + PB1D10 SINE Alu 2 117 0 8 992 378 271 113 0 chr5 53387423 53387556 -99149703 - B1F2 SINE Alu 0 149 2 8 992 382 294 118 0 chr5 53387569 53387693 -99149566 - ID_B1 SINE B4 -74 218 80 8 992 207 0 0 0 chr5 53388605 53388628 -99148631 + (C)n Simple_repeat Simple_repeat 1 23 0 8 992 311 310 35 9 chr5 53388641 53388755 -99148504 - PB1D10 SINE Alu 0 117 1 8 992 230 246 95 14 chr5 53388864 53388938 -99148321 + L2 LINE L2 2476 2555 -864 8 992 263 311 135 32 chr5 53388955 53389081 -99148178 - Tigger5 DNA MER2_type -54 2352 2214 8 992 767 201 0 14 chr5 53389283 53389424 -99147835 - B1_Mus2 SINE Alu -7 140 2 8 992 235 308 26 0 chr5 53390377 53390455 -99146804 - RMER13A LTR ERVK 0 860 781 8 992 264 271 67 86 chr5 53390545 53390650 -99146609 + MT2B LTR ERVL 138 240 -361 8 992 681 255 0 45 chr5 53390565 53390721 -99146538 + B1_Mur1 SINE Alu 1 149 0 8 992 308 361 11 82 chr5 53390721 53390741 -99146518 + B4A SINE B4 118 246 -46 8 992 489 17 0 0 chr5 53391384 53391442 -99145817 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 992 294 95 0 0 chr5 53391442 53391484 -99145775 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 992 292 308 9 9 chr5 53391938 53392043 -99145216 + PB1D10 SINE Alu 5 109 -8 8 992 727 207 27 7 chr5 53392076 53392222 -99145037 + B1F SINE Alu 1 149 0 8 992 367 297 140 35 chr5 53392297 53392468 -99144791 + B4A SINE B4 57 245 -47 8 992 245 111 44 0 chr5 53392468 53392513 -99144746 + GA-rich Low_complexity Low_complexity 2 48 0 8 992 755 175 0 45 chr5 53392599 53392731 -99144528 - B1_Mus2 SINE Alu -21 126 1 8 992 901 211 84 5 chr5 53392757 53392948 -99144311 - B3 SINE B2 -10 206 1 8 992 184 233 47 62 chr5 53392948 53393001 -99144258 + MER5B DNA MER1_type 56 108 -70 8 992 971 191 57 38 chr5 53393060 53393272 -99143987 - B3 SINE B2 0 216 1 8 992 180 298 0 0 chr5 53393317 53393364 -99143895 + MER5A DNA MER1_type 56 102 -87 8 992 601 256 16 0 chr5 53393638 53393767 -99143492 + ID_B1 SINE B4 92 222 -2 8 992 877 182 0 0 chr5 53394513 53394650 -99142609 + B1_Mus1 SINE Alu 2 138 -10 8 992 369 43 0 0 chr5 53394650 53394697 -99142562 + (CAA)n Simple_repeat Simple_repeat 2 48 0 8 992 181 345 86 43 chr5 53394735 53394968 -99142291 + MIRb SINE MIR 21 263 -5 8 992 289 342 62 39 chr5 53395048 53395283 -99141976 - MIR SINE MIR -3 259 29 8 992 449 350 0 16 chr5 53395350 53395472 -99141787 + B1F2 SINE Alu 3 122 -27 8 992 186 71 0 0 chr5 53395495 53395523 -99141736 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 992 245 29 0 29 chr5 53395537 53395572 -99141687 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 8 992 443 82 14 0 chr5 53395979 53396052 -99141207 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 8 992 683 177 9 0 chr5 53396053 53396166 -99141093 + B3 SINE B2 3 116 -100 8 992 658 146 0 0 chr5 53396169 53396272 -99140987 - ORR1C2 LTR MaLR -16 368 266 8 992 3523 128 79 16 chr5 53396301 53396911 -99140348 - RMER6A LTR ERVK 0 756 109 8 992 910 138 68 77 chr5 53396937 53397145 -99140114 - ORR1C2 LTR MaLR -204 180 1 8 992 401 272 19 10 chr5 53397145 53397249 -99140010 + B3 SINE B2 112 216 0 8 992 642 244 0 22 chr5 53397294 53397428 -99139831 - ID_B1 SINE B4 -1 223 93 8 992 1215 62 0 0 chr5 53397471 53397617 -99139642 + B1_Mm SINE Alu 2 147 0 8 992 216 233 216 14 chr5 53397706 53397780 -99139479 - L3 LINE CR1 -126 4363 4275 8 992 249 335 10 144 chr5 53397788 53397983 -99139276 + B4A SINE B4 2 170 -122 8 992 351 192 0 0 chr5 53397983 53398056 -99139203 + (CAT)n Simple_repeat Simple_repeat 2 74 0 8 992 222 37 0 0 chr5 53398154 53398181 -99139078 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 8 992 21 0 0 0 chr5 53398184 53398205 -99139054 + AT_rich Low_complexity Low_complexity 1 21 0 8 992 345 47 0 0 chr5 53398209 53398252 -99139007 + (TCCCC)n Simple_repeat Simple_repeat 3 45 0 8 992 1283 75 17 6 chr5 53398254 53398427 -99138832 - B2_Mm2 SINE B2 -19 176 2 8 992 618 248 0 102 chr5 53398452 53398618 -99138641 - B1_Mur2 SINE Alu 0 149 1 8 992 285 267 47 94 chr5 53398618 53398660 -99138599 - MT2B LTR ERVL -446 155 120 8 992 1182 68 0 13 chr5 53398666 53398816 -99138443 + B1_Mus1 SINE Alu 1 148 0 8 992 230 204 0 58 chr5 53398893 53398945 -99138314 - PB1D7 SINE Alu -1 119 71 8 992 262 218 36 18 chr5 53399218 53399274 -99137985 + B1F1 SINE Alu 1 57 -92 8 992 354 280 97 0 chr5 53399229 53399322 -99137937 + ID_B1 SINE B4 94 195 -29 8 992 411 218 0 0 chr5 53399551 53399652 -99137607 + CT-rich Low_complexity Low_complexity 3 103 0 8 992 1073 84 0 0 chr5 53399693 53399836 -99137423 - B1_Mus1 SINE Alu 0 148 6 8 992 443 278 0 143 chr5 53399728 53399917 -99137342 - MT2B LTR ERVL -337 264 103 8 992 1095 122 0 0 chr5 53399946 53400118 -99137141 + (CTG)n Simple_repeat Simple_repeat 2 173 0 8 992 331 182 118 100 chr5 53400122 53400232 -99137027 - PB1D7 SINE Alu -2 118 7 8 992 722 226 131 0 chr5 53400143 53400311 -99136948 - ID_B1 SINE B4 -34 190 1 8 992 822 244 173 62 chr5 53400987 53401328 -99135931 - MTEa LTR MaLR 0 379 1 8 992 462 267 103 7 chr5 53401335 53401471 -99135788 + B4A SINE B4 5 153 -139 8 992 754 125 54 87 chr5 53401550 53401699 -99135560 + B1_Mus2 SINE Alu 1 144 -3 8 992 28 29 0 0 chr5 53401712 53401747 -99135512 + AT_rich Low_complexity Low_complexity 1 35 0 8 992 795 184 15 0 chr5 53401837 53401973 -99135286 + B1_Mur4 SINE Alu 7 144 -6 8 992 21 36 0 0 chr5 53401976 53402004 -99135255 + AT_rich Low_complexity Low_complexity 1 28 0 8 992 213 328 0 32 chr5 53402047 53402110 -99135149 + B1_Mur4 SINE Alu 2 62 -88 9 992 476 322 27 7 chr5 53402149 53402296 -99134963 + ID_B1 SINE B4 39 188 -36 9 992 254 193 31 109 chr5 53402630 53402694 -99134565 - B1F SINE Alu -12 137 79 9 992 467 250 129 0 chr5 53403204 53403320 -99133939 - ID_B1 SINE B4 -67 157 27 9 992 254 253 21 94 chr5 53403342 53403374 -99133885 - B1F SINE Alu -60 89 59 9 992 180 0 0 0 chr5 53403374 53403394 -99133865 + (C)n Simple_repeat Simple_repeat 1 20 0 9 992 254 253 21 94 chr5 53403394 53403457 -99133802 - B1F SINE Alu -91 58 1 9 992 469 207 76 108 chr5 53403548 53403566 -99133693 + B4 SINE B4 72 223 -69 9 992 776 187 29 0 chr5 53403566 53403705 -99133554 + B1_Mus1 SINE Alu 4 146 -2 9 992 1042 125 11 0 chr5 53403740 53403916 -99133343 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 9 992 440 304 68 20 chr5 53404336 53404484 -99132775 - ID_B1 SINE B4 -2 222 68 9 992 476 303 8 32 chr5 53404645 53404771 -99132488 - RSINE1 SINE B4 -40 125 3 9 992 339 237 0 0 chr5 53404816 53404909 -99132350 + CT-rich Low_complexity Low_complexity 3 95 0 9 992 489 277 61 36 chr5 53404960 53405125 -99132134 - ID_B1 SINE B4 -37 187 19 9 992 406 220 98 27 chr5 53405125 53405237 -99132022 - B1F SINE Alu 0 149 30 9 992 264 323 58 29 chr5 53405329 53405466 -99131793 - Charlie23a DNA MER1_type -105 234 94 9 992 249 283 120 0 chr5 53405449 53405541 -99131718 + B1F SINE Alu 9 111 -38 9 992 300 333 36 22 chr5 53405803 53405941 -99131318 - MER45A DNA Tip100 0 178 39 9 992 180 267 44 0 chr5 53406108 53406153 -99131106 - L2c LINE L2 -69 3318 3272 9 992 357 320 18 96 chr5 53406683 53406849 -99130410 - B4 SINE B4 -129 163 11 9 992 710 118 17 0 chr5 53406863 53406982 -99130277 + (TTTC)n Simple_repeat Simple_repeat 3 123 0 9 992 230 139 0 132 chr5 53406982 53407065 -99130194 - RMER10B LTR ERVL -99 299 228 9 992 639 39 0 0 chr5 53407075 53407153 -99130106 + (GA)n Simple_repeat Simple_repeat 2 79 0 9 992 775 273 32 14 chr5 53407170 53407389 -99129870 - ID_B1 SINE B4 0 224 2 9 992 778 138 92 0 chr5 53407685 53407815 -99129444 + B1_Mur2 SINE Alu 1 142 -7 9 992 546 43 0 0 chr5 53408460 53408529 -99128730 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 9 992 222 369 0 0 chr5 53408530 53408548 -99128711 - ID4 SINE ID -59 93 53 9 992 239 296 0 0 chr5 53408548 53408602 -99128657 - ID SINE ID -148 76 23 9 992 222 369 0 0 chr5 53408602 53408622 -99128637 - ID4 SINE ID -59 52 2 9 992 812 144 83 8 chr5 53409011 53409144 -99128115 + B1_Mur4 SINE Alu 1 143 -7 9 992 271 134 36 24 chr5 53409145 53409229 -99128030 + (TA)n Simple_repeat Simple_repeat 2 86 0 9 992 38 0 0 0 chr5 53409232 53409270 -99127989 + AT_rich Low_complexity Low_complexity 1 38 0 9 992 378 0 0 0 chr5 53409340 53409382 -99127877 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 992 286 286 112 0 chr5 53409397 53409495 -99127764 + B4A SINE B4 180 288 -4 9 992 187 303 105 0 chr5 53410461 53410537 -99126722 + L2b LINE L2 3287 3370 -5 9 992 21 0 0 0 chr5 53410586 53410607 -99126652 + AT_rich Low_complexity Low_complexity 1 21 0 9 992 783 221 0 7 chr5 53410640 53410790 -99126469 + B1_Mur2 SINE Alu 1 149 0 9 992 627 212 26 0 chr5 53410790 53410903 -99126356 + B3 SINE B2 4 119 -97 9 992 507 33 0 0 chr5 53411340 53411401 -99125858 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 9 992 391 289 0 43 chr5 53411585 53411676 -99125583 + ID SINE ID 2 88 -136 9 992 385 191 15 0 chr5 53411676 53411744 -99125515 - ORR1D1 LTR MaLR 0 370 302 9 992 1493 64 37 0 chr5 53411744 53411932 -99125327 + B2_Mm2 SINE B2 1 195 0 9 992 201 74 0 0 chr5 53412111 53412138 -99125121 + (A)n Simple_repeat Simple_repeat 1 27 0 9 992 291 263 222 0 chr5 53412139 53412238 -99125021 - ORR1D1 LTR MaLR -55 315 195 9 992 739 198 0 22 chr5 53412249 53412383 -99124876 - B1_Mur2 SINE Alu -2 147 17 9 992 457 227 11 0 chr5 53412388 53412476 -99124783 - ORR1D1 LTR MaLR -164 210 122 9 992 857 30 0 0 chr5 53412482 53412583 -99124676 + B2_Mm2 SINE B2 2 102 -93 9 992 745 164 31 0 chr5 53412617 53412745 -99124514 - ORR1D1 LTR MaLR -223 151 20 9 992 279 267 0 0 chr5 53412750 53412810 -99124449 + ID_B1 SINE B4 164 223 -1 9 992 509 217 108 0 chr5 53412929 53413058 -99124201 + B1_Mur2 SINE Alu 1 143 -6 9 992 204 289 47 35 chr5 53413368 53413454 -99123805 + MIRb SINE MIR 110 196 -72 9 992 1518 6 0 0 chr5 53413483 53413654 -99123605 + (TCTCCC)n Simple_repeat Simple_repeat 5 175 0 9 992 570 278 0 53 chr5 53413656 53413808 -99123451 - ID_B1 SINE B4 -3 221 78 9 992 421 254 46 31 chr5 53413839 53413969 -99123290 - B1F SINE Alu -17 132 1 9 992 1074 239 281 9 chr5 53415156 53415486 -99121773 - MTD LTR MaLR 0 419 1 9 992 286 314 29 0 chr5 53415690 53415760 -99121499 - AluF_3 SINE Alu -102 209 138 9 992 508 214 0 0 chr5 53415835 53415924 -99121335 - PB1D10 SINE Alu -15 102 14 9 992 1610 203 126 31 chr5 53416175 53416556 -99120703 - MTD LTR MaLR 0 419 3 9 992 212 298 0 0 chr5 53416751 53416798 -99120461 + G-rich Low_complexity Low_complexity 4 50 0 9 992 282 56 0 0 chr5 53417193 53417229 -99120030 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 9 992 531 209 0 28 chr5 53417229 53417328 -99119931 - PB1D7 SINE Alu -12 108 12 9 992 335 278 0 58 chr5 53417240 53417343 -99119916 - ID_B1 SINE B4 -49 175 79 9 992 825 160 20 20 chr5 53417485 53417632 -99119627 - B1_Mus2 SINE Alu 0 147 1 9 992 771 183 92 0 chr5 53417671 53417802 -99119457 + B1_Mur4 SINE Alu 1 143 -7 9 992 748 199 45 34 chr5 53419237 53419399 -99117860 - RSINE1 SINE B4 -2 163 1 9 992 546 119 0 0 chr5 53419450 53419534 -99117725 + (TCC)n Simple_repeat Simple_repeat 2 85 0 9 992 798 261 18 22 chr5 53419534 53419757 -99117502 - ID_B1 SINE B4 0 224 3 9 992 2762 71 143 139 chr5 53419807 53420317 -99116942 - RLTR1B LTR ERV1 0 512 1 9 992 254 314 147 0 chr5 53420517 53420530 -99116729 - B1F1 SINE Alu -18 131 15 9 992 439 247 11 0 chr5 53420530 53420616 -99116643 - ID_B1 SINE B4 -39 185 99 9 992 571 158 33 2 chr5 53420616 53420729 -99116530 + B1_Mur4 SINE Alu 1 120 0 9 992 264 290 16 0 chr5 53420747 53420809 -99116450 - ID_B1 SINE B4 -128 96 34 9 992 316 298 91 8 chr5 53420967 53421099 -99116160 - B1F SINE Alu -6 143 1 9 992 245 333 12 0 chr5 53421104 53421188 -99116071 - PB1D10 SINE Alu -29 88 4 9 992 621 0 0 0 chr5 53421411 53421480 -99115779 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 9 992 22 70 0 0 chr5 53421484 53421527 -99115732 + AT_rich Low_complexity Low_complexity 1 43 0 9 992 1457 71 5 0 chr5 53421564 53421748 -99115511 + B2_Mm1a SINE B2 1 185 -8 9 992 261 75 0 0 chr5 53422507 53422547 -99114712 + (T)n Simple_repeat Simple_repeat 1 40 0 9 992 534 247 65 7 chr5 53422670 53422825 -99114434 - MER20 DNA MER1_type 0 219 56 9 992 525 44 0 0 chr5 53422890 53422958 -99114301 + (TC)n Simple_repeat Simple_repeat 1 68 0 9 992 413 302 0 48 chr5 53423590 53423715 -99113544 - ID_B1 SINE B4 0 224 106 9 992 363 269 27 18 chr5 53423751 53423861 -99113398 - PB1D9 SINE Alu -8 112 2 9 992 27 0 0 0 chr5 53423882 53423909 -99113350 + AT_rich Low_complexity Low_complexity 1 27 0 9 992 909 205 75 0 chr5 53423969 53424169 -99113090 + ID_B1 SINE B4 2 216 -8 9 992 604 155 131 8 chr5 53424220 53424350 -99112909 + B1_Mus2 SINE Alu 1 146 -1 9 992 762 70 0 0 chr5 53424376 53424490 -99112769 + (GA)n Simple_repeat Simple_repeat 1 114 0 9 992 538 256 60 76 chr5 53424493 53424679 -99112580 + B3A SINE B2 34 216 0 9 992 383 211 161 15 chr5 53424718 53424848 -99112411 + B1F SINE Alu 1 149 0 9 992 1052 135 41 0 chr5 53425076 53425246 -99112013 + B2_Mm1t SINE B2 3 179 -14 9 992 271 125 444 12 chr5 53425301 53425382 -99111877 + B2_Mm2 SINE B2 46 161 -34 9 992 306 0 0 0 chr5 53425382 53425416 -99111843 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 9 992 330 316 3 0 chr5 53425459 53425775 -99111484 + (CAAGC)n Simple_repeat Simple_repeat 1 317 0 9 992 342 305 0 0 chr5 53425798 53425975 -99111284 + (CAAGC)n Simple_repeat Simple_repeat 2 178 0 9 992 297 308 6 0 chr5 53425998 53426154 -99111105 + (CAAGC)n Simple_repeat Simple_repeat 2 158 0 9 992 342 305 0 0 chr5 53426177 53426354 -99110905 + (CAAGC)n Simple_repeat Simple_repeat 2 178 0 9 992 342 305 0 0 chr5 53426496 53426673 -99110586 + (CAAGC)n Simple_repeat Simple_repeat 2 178 0 9 992 221 346 0 6 chr5 53426637 53426800 -99110459 + (CCTAG)n Simple_repeat Simple_repeat 1 162 0 9 992 301 316 0 0 chr5 53426767 53426944 -99110315 + (CAAGC)n Simple_repeat Simple_repeat 2 178 0 9 992 221 338 0 0 chr5 53426981 53427135 -99110124 + (CAAGC)n Simple_repeat Simple_repeat 5 158 0 9 992 827 154 21 14 chr5 53427395 53427540 -99109719 - B1_Mus1 SINE Alu 0 148 3 9 992 351 238 83 37 chr5 53427821 53427930 -99109329 + PB1D9 SINE Alu 5 118 -2 9 992 198 0 0 0 chr5 53427932 53427954 -99109305 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 9 992 1170 75 0 13 chr5 53428225 53428374 -99108885 - B1_Mus2 SINE Alu 0 147 1 9 992 246 212 242 0 chr5 53428499 53428565 -99108694 + B1F SINE Alu 68 149 0 9 992 806 191 14 21 chr5 53428576 53428720 -99108539 + B1_Mur3 SINE Alu 7 149 0 9 992 439 231 77 4 chr5 53428768 53428876 -99108383 + PB1D9 SINE Alu 6 141 -7 9 992 216 67 0 0 chr5 53428877 53428907 -99108352 + (CAAAC)n Simple_repeat Simple_repeat 5 34 0 9 992 308 213 203 6 chr5 53428924 53429020 -99108239 + B1_Mur1 SINE Alu 10 144 -5 9 992 852 39 0 0 chr5 53429094 53429198 -99108061 + (GA)n Simple_repeat Simple_repeat 1 104 0 9 992 400 291 41 41 chr5 53430429 53430551 -99106708 + ID_B1 SINE B4 87 208 -16 9 992 517 256 101 156 chr5 53430573 53430791 -99106468 + ID_B1 SINE B4 16 221 -3 9 992 1103 82 0 14 chr5 53430796 53430944 -99106315 + B1_Mus1 SINE Alu 3 148 0 9 992 581 159 168 0 chr5 53430963 53431076 -99106183 + B1_Mus2 SINE Alu 5 136 -11 1 992 251 288 55 0 chr5 53431324 53431397 -99105862 - ID_B1 SINE B4 -63 161 85 1 992 233 185 70 53 chr5 53431359 53431416 -99105843 - MT2B2 LTR ERVL -282 302 245 1 992 391 248 74 41 chr5 53432013 53432135 -99105124 - B1F SINE Alu 0 149 24 1 992 358 290 39 31 chr5 53432775 53432795 -99104464 - B1_Mur3 SINE Alu -11 138 10 1 992 385 279 9 37 chr5 53432795 53432903 -99104356 - ID_B1 SINE B4 -29 195 91 1 992 273 319 0 0 chr5 53434113 53434185 -99103074 - ID4 SINE ID -8 75 4 1 992 377 311 47 0 chr5 53434203 53434309 -99102950 - B1F SINE Alu -37 112 2 1 992 180 111 0 0 chr5 53434313 53434340 -99102919 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1 992 229 340 36 36 chr5 53435079 53435189 -99102070 - MTE2a LTR MaLR 0 379 270 1 992 348 190 59 23 chr5 53435389 53435467 -99101792 + B1F SINE Alu 12 88 -32 1 992 252 255 0 7 chr5 53435528 53435596 -99101663 - B1F SINE Alu -4 145 48 1 992 259 255 11 66 chr5 53435726 53435839 -99101420 - PB1D7 SINE Alu 0 120 18 1 992 360 0 0 0 chr5 53435883 53435923 -99101336 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 992 352 259 223 51 chr5 53436525 53436700 -99100559 + MIR SINE MIR 34 238 -24 1 992 324 270 58 29 chr5 53436864 53436967 -99100292 + PB1D10 SINE Alu 12 117 0 1 992 534 256 116 6 chr5 53437456 53437629 -99099630 - B3A SINE B2 -5 193 2 1 992 416 167 40 30 chr5 53437634 53437733 -99099526 - PB1D9 SINE Alu -1 119 20 1 992 412 250 125 0 chr5 53437745 53437873 -99099386 - ID_B1 SINE B4 0 224 81 1 992 467 220 46 0 chr5 53438215 53438324 -99098935 + PB1D9 SINE Alu 1 114 -6 1 992 1224 35 0 0 chr5 53438389 53438533 -99098726 - B1_Mm SINE Alu -3 144 1 1 992 21 36 0 0 chr5 53440363 53440391 -99096868 + GC_rich Low_complexity Low_complexity 1 28 0 1 992 262 284 56 128 chr5 53441815 53441858 -99095401 - PB1D10 SINE Alu -1 116 82 1 992 1183 137 5 5 chr5 53441858 53442042 -99095217 - B2_Mm1t SINE B2 -8 185 2 1 992 262 284 56 128 chr5 53442042 53442066 -99095193 - PB1D10 SINE Alu -36 81 1 1 992 266 173 0 88 chr5 53442066 53442123 -99095136 - B4A SINE B4 -155 137 86 1 992 337 267 49 10 chr5 53442283 53442385 -99094874 - PB1D10 SINE Alu -2 115 10 1 992 207 250 14 68 chr5 53442834 53442907 -99094352 + MIR SINE MIR 186 254 -8 1 992 557 127 42 8 chr5 53443812 53443931 -99093328 + CT-rich Low_complexity Low_complexity 5 127 0 1 992 306 0 0 0 chr5 53445584 53445618 -99091641 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 992 245 382 49 0 chr5 53445629 53445731 -99091528 - PB1D10 SINE Alu -8 109 3 1 992 256 318 100 8 chr5 53445743 53445766 -99091493 - ID_B1 SINE B4 -4 220 151 1 992 404 198 70 0 chr5 53445766 53445852 -99091407 - B1_Mur1 SINE Alu -36 113 22 1 992 256 318 100 8 chr5 53445852 53445873 -99091386 - ID_B1 SINE B4 -4 150 79 1 992 462 18 0 0 chr5 53447857 53447912 -99089347 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 992 331 280 8 108 chr5 53447915 53448035 -99089224 - B1F SINE Alu -15 134 27 1 992 339 289 30 45 chr5 53448533 53448667 -99088592 - B1_Mus2 SINE Alu -15 132 1 1 992 468 229 123 0 chr5 53451241 53451363 -99085896 - B1_Mur2 SINE Alu -8 141 5 1 992 329 212 2 0 chr5 53451398 53451459 -99085800 - PB1D9 SINE Alu -87 62 1 1 992 249 188 52 104 chr5 53451401 53451478 -99085781 - MT2B2 LTR ERVL -361 223 151 1 992 181 180 140 0 chr5 53452089 53452139 -99085120 + L2 LINE L2 1444 1500 -1919 1 992 294 250 0 0 chr5 53452228 53452288 -99084971 + ID_B1 SINE B4 165 224 0 1 992 263 228 192 16 chr5 53453823 53453948 -99083311 - L1M5 LINE L1 -457 5667 5521 1 992 357 24 0 0 chr5 53454117 53454159 -99083100 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 992 315 247 251 80 chr5 53454199 53454362 -99082897 + B3A SINE B2 1 191 -7 1 992 517 159 0 74 chr5 53454358 53454453 -99082806 + PB1D9 SINE Alu 25 112 -8 1 992 27 0 0 0 chr5 53454734 53454761 -99082498 + AT_rich Low_complexity Low_complexity 1 27 0 1 992 392 171 100 0 chr5 53454819 53454889 -99082370 - B3 SINE B2 -137 79 3 1 992 1048 113 205 0 chr5 53455691 53455876 -99081383 - URR1B DNA MER1_type 0 225 3 1 992 254 189 261 78 chr5 53457402 53457517 -99079742 + ID_B1 SINE B4 84 219 -5 1 992 261 0 0 0 chr5 53457541 53457570 -99079689 + (A)n Simple_repeat Simple_repeat 1 29 0 1 992 5405 53 0 1 chr5 53457570 53458244 -99079015 - L1_Mm LINE L1 -1449 4434 3762 1 992 1261 54 0 18 chr5 53458248 53458418 -99078841 + L1Md_F2 LINE L1 6415 6581 -1 1 992 300 231 193 59 chr5 53458418 53458579 -99078680 + B3A SINE B2 12 201 -15 1 992 244 283 41 81 chr5 53459754 53459877 -99077382 - PB1D9 SINE Alu 0 120 3 1 992 236 256 12 12 chr5 53460624 53460707 -99076552 + (CTG)n Simple_repeat Simple_repeat 3 85 0 1 992 23 33 0 0 chr5 53462377 53462407 -99074852 + AT_rich Low_complexity Low_complexity 1 30 0 1 992 271 70 0 0 chr5 53462823 53462866 -99074393 + Lx4A LINE L1 7014 7056 -2 1 992 226 220 20 0 chr5 53463241 53463291 -99073968 - MLT1G LTR MaLR -5 586 536 1 992 363 203 0 39 chr5 53463401 53463478 -99073781 + MER2 DNA MER2_type 162 235 -110 1 992 331 181 47 35 chr5 53463832 53463918 -99073341 + MER33 DNA MER1_type 156 242 -82 1 992 442 225 232 9 chr5 53463921 53464033 -99073226 - B3A SINE B2 -61 137 1 1 992 409 262 61 76 chr5 53464044 53464160 -99073099 - B4 SINE B4 -71 221 108 1 992 402 21 0 0 chr5 53464160 53464207 -99073052 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 992 409 262 61 76 chr5 53464207 53464222 -99073037 - B4 SINE B4 -185 107 93 1 992 446 256 66 29 chr5 53464230 53464367 -99072892 - B1F2 SINE Alu -7 142 1 1 992 475 265 17 8 chr5 53465155 53465273 -99071986 + MER57F LTR ERV1 1 119 -317 1 992 294 29 0 0 chr5 53465275 53465310 -99071949 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1 992 351 295 76 69 chr5 53465426 53465557 -99071702 + RSINE1 SINE B4 11 142 -23 1 992 465 122 0 0 chr5 53465579 53465653 -99071606 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 992 297 167 59 29 chr5 53465696 53465764 -99071495 + MER57F LTR ERV1 133 202 -234 1 992 1216 61 0 0 chr5 53466153 53466300 -99070959 - B1_Mus2 SINE Alu 0 147 1 1 992 694 269 67 9 chr5 53466393 53466603 -99070656 - ID_B1 SINE B4 -1 223 2 1 992 309 263 167 7 chr5 53467208 53467346 -99069913 + RSINE1 SINE B4 3 162 -3 1 992 324 345 0 8 chr5 53467671 53467788 -99069471 + CT-rich Low_complexity Low_complexity 2 117 0 1 992 284 210 12 0 chr5 53468096 53468177 -99069082 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 992 558 245 171 7 chr5 53468178 53468318 -99068941 - RSINE1 SINE B4 -1 164 2 1 992 414 0 0 0 chr5 53468696 53468742 -99068517 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 992 270 261 0 0 chr5 53468789 53468835 -99068424 + ID4_ SINE ID 36 81 -2 1 992 300 111 0 0 chr5 53468835 53468880 -99068379 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 1 992 297 167 0 85 chr5 53468883 53468942 -99068317 + B1_Mur4 SINE Alu 7 60 -90 1 992 588 163 0 0 chr5 53468962 53469054 -99068205 + (CAGAGA)n Simple_repeat Simple_repeat 1 92 0 1 992 366 211 0 0 chr5 53469054 53469125 -99068134 + B1_Mm SINE Alu 42 112 -35 1 992 294 98 0 0 chr5 53469145 53469196 -99068063 + (CGAG)n Simple_repeat Simple_repeat 2 52 0 1 992 472 188 265 0 chr5 53469377 53469494 -99067765 - B1F1 SINE Alu 0 149 2 1 992 401 281 88 64 chr5 53470411 53470582 -99066677 + MIR SINE MIR 87 261 -1 1 992 216 135 0 0 chr5 53471035 53471072 -99066187 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 1 992 812 210 7 0 chr5 53471119 53471262 -99065997 - B1_Mur2 SINE Alu -5 144 1 1 992 1114 206 24 5 chr5 53471275 53471485 -99065774 - B3 SINE B2 -2 214 1 1 992 324 267 58 29 chr5 53471574 53471678 -99065581 - MLT1C LTR MaLR -7 482 376 1 992 3643 15 0 0 chr5 53471752 53472148 -99065111 - MTA_Mm LTR MaLR 0 396 1 1 992 241 250 56 42 chr5 53472214 53472285 -99064974 - MLT1C LTR MaLR -328 251 180 1 992 455 231 0 52 chr5 53472290 53472386 -99064873 + PB1D10 SINE Alu 1 91 -26 1 992 414 0 0 0 chr5 53472388 53472434 -99064825 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 992 180 0 0 0 chr5 53472434 53472453 -99064806 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 992 362 386 112 41 chr5 53472577 53472871 -99064388 - MLT1C-int LTR MaLR -5 1484 1170 1 992 183 129 0 0 chr5 53472986 53473017 -99064242 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 1 992 368 326 15 22 chr5 53473022 53473127 -99064132 - MLT1C LTR MaLR -25 442 339 1 992 2054 135 53 12 chr5 53473127 53473465 -99063794 + ORR1B2 LTR MaLR 1 352 -15 1 992 1018 164 23 6 chr5 53473462 53473634 -99063625 + ORR1B2 LTR MaLR 185 359 -8 1 992 279 289 24 139 chr5 53473667 53473832 -99063427 - MLT1C LTR MaLR -193 274 129 1 992 225 0 0 0 chr5 53473851 53473876 -99063383 + (T)n Simple_repeat Simple_repeat 1 25 0 1 992 1224 61 0 0 chr5 53473876 53474024 -99063235 - B1_Mus1 SINE Alu 0 148 1 1 992 685 159 19 0 chr5 53474124 53474231 -99063028 - B1_Mur4 SINE Alu 0 150 42 1 992 1425 254 31 40 chr5 53474224 53474576 -99062683 + ORR1D2 LTR MaLR 22 370 0 1 992 889 114 6 29 chr5 53474589 53474617 -99062642 + (TCC)n Simple_repeat Simple_repeat 1 28 0 1 992 1010 117 0 22 chr5 53474617 53474800 -99062459 + (TTC)n Simple_repeat Simple_repeat 1 179 0 1 992 889 114 6 29 chr5 53474800 53474943 -99062316 + (TCC)n Simple_repeat Simple_repeat 2 141 0 1 992 231 347 0 0 chr5 53475127 53475199 -99062060 - MLT1C LTR MaLR -510 81 10 1 992 870 316 51 15 chr5 53475309 53475582 -99061677 - B4A SINE B4 0 292 10 1 992 574 239 1 0 chr5 53475643 53475752 -99061507 - B1_Mur1 SINE Alu -39 110 1 1 992 303 221 31 112 chr5 53475752 53475795 -99061464 - MT2B LTR ERVL -311 164 155 1 992 432 0 0 0 chr5 53476190 53476238 -99061021 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 992 231 272 144 68 chr5 53476308 53476454 -99060805 + MamRep605 Unknown Unknown 580 736 -140 1 15 5372 156 13 7 chr5 53476806 53477660 -99059599 - RMER13A LTR ERVK -1 859 1 1 993 243 218 40 19 chr5 53478590 53478680 -99058579 + MIR SINE MIR 94 197 -71 1 993 1026 251 94 20 chr5 53478897 53479247 -99058012 + MTEa LTR MaLR 1 376 -3 1 993 373 262 171 24 chr5 53479448 53479612 -99057647 - RMER15 LTR ERVL -51 524 337 1 993 470 287 14 20 chr5 53479878 53480024 -99057235 + ID_B1 SINE B4 78 222 -2 1 993 619 241 38 21 chr5 53480133 53480308 -99056951 - B3 SINE B2 -5 188 1 1 993 574 234 176 18 chr5 53480309 53480531 -99056728 - L1MB5 LINE L1 -10 6164 5908 1 993 731 305 78 102 chr5 53480543 53480668 -99056591 - L1MB5 LINE L1 -149 6025 5910 1 993 663 277 0 0 chr5 53480668 53480805 -99056454 - B1F SINE Alu -12 137 1 1 993 731 305 78 102 chr5 53480805 53481230 -99056029 - L1MB5 LINE L1 -265 5909 5488 1 993 339 284 0 0 chr5 53481232 53481313 -99055946 - ID4_ SINE ID -2 81 1 1 993 391 167 0 27 chr5 53481325 53481436 -99055823 + CT-rich Low_complexity Low_complexity 1 108 0 1 993 388 192 273 15 chr5 53481438 53481603 -99055656 - L1MB5 LINE L1 -652 5516 5307 1 993 397 335 101 41 chr5 53481603 53481921 -99055338 - MLT1A0 LTR MaLR 0 365 29 1 993 429 296 16 0 chr5 53481951 53482076 -99055183 - Tigger5 DNA MER2_type 0 2406 2280 1 993 1294 154 23 0 chr5 53482104 53482318 -99054941 + RLTR14 LTR ERV1 2 220 -162 1 993 1149 163 74 28 chr5 53482318 53482413 -99054846 - RLTR20D LTR ERVK 0 568 463 1 993 414 0 0 0 chr5 53482413 53482459 -99054800 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 993 270 0 0 0 chr5 53482459 53482488 -99054771 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 993 2189 164 29 14 chr5 53482488 53482895 -99054364 - RLTR20D LTR ERVK -106 462 1 1 993 609 112 336 0 chr5 53482896 53483021 -99054238 + RLTR14 LTR ERV1 216 382 0 1 993 1327 210 123 6 chr5 53483175 53483501 -99053758 - ORR1D2 LTR MaLR -6 364 1 1 993 238 193 53 0 chr5 53483502 53483559 -99053700 - L1MB5 LINE L1 -912 5234 5175 1 993 594 130 20 0 chr5 53483606 53483706 -99053553 + Lx3B LINE L1 6872 6973 0 1 993 374 310 55 0 chr5 53483748 53483862 -99053397 - PB1D7 SINE Alu -23 126 1 1 993 494 310 114 54 chr5 53483862 53484159 -99053100 - L1MB5 LINE L1 -958 5188 4874 1 993 326 247 118 13 chr5 53484769 53484875 -99052384 + B1F SINE Alu 1 139 -10 1 993 256 233 0 48 chr5 53484820 53484883 -99052376 + ID_B1 SINE B4 163 222 -2 1 993 453 259 0 0 chr5 53485038 53485169 -99052090 + (TA)n Simple_repeat Simple_repeat 1 131 0 1 993 314 338 53 15 chr5 53485276 53485408 -99051851 - B1F SINE Alu 0 149 13 1 993 619 110 3 51 chr5 53485517 53485873 -99051386 + (TG)n Simple_repeat Simple_repeat 1 338 0 1 993 804 261 0 74 chr5 53486109 53486312 -99050947 + B3A SINE B2 11 198 0 1 993 1200 213 169 3 chr5 53486404 53486729 -99050530 + MTEa LTR MaLR 1 379 0 1 993 2600 232 109 87 chr5 53487032 53487873 -99049386 - RMER13A LTR ERVK 0 860 1 1 993 239 265 0 0 chr5 53488174 53488223 -99049036 + PB1D10 SINE Alu 22 70 -47 1 993 339 278 41 7 chr5 53488364 53488509 -99048750 + CT-rich Low_complexity Low_complexity 4 153 0 1 993 453 90 0 0 chr5 53488531 53488598 -99048661 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 993 409 316 80 14 chr5 53488603 53488741 -99048518 - RSINE1 SINE B4 -16 149 3 1 993 295 296 12 0 chr5 53489023 53489104 -99048155 + ID4_ SINE ID 2 83 0 1 993 1126 204 162 55 chr5 53489241 53489604 -99047655 + MTD LTR MaLR 18 419 0 1 993 1899 304 65 64 chr5 53489608 53490645 -99046614 + MTD-int LTR MaLR 4 1088 -170 1 993 991 277 0 0 chr5 53490645 53490840 -99046419 - B3 SINE B2 -11 205 11 1 993 2145 278 47 44 chr5 53490892 53491348 -99045911 + Lx6 LINE L1 6004 6449 -601 1 993 347 0 0 23 chr5 53491348 53491392 -99045867 + (CAAT)n Simple_repeat Simple_repeat 4 46 0 1 993 2227 247 20 32 chr5 53491392 53492017 -99045242 + Lx6 LINE L1 6450 7434 -26 1 993 338 284 88 0 chr5 53492041 53492143 -99045116 + MTD-int LTR MaLR 1148 1258 0 1 993 1066 262 127 102 chr5 53492143 53492518 -99044741 + MTD LTR MaLR 14 389 -30 1 993 500 305 55 0 chr5 53492971 53493135 -99044124 - MER34A LTR ERV1 -327 244 72 1 993 1050 280 45 13 chr5 53494268 53494576 -99042683 - MTE2b LTR MaLR -44 335 18 1 993 367 195 148 23 chr5 53494920 53495030 -99042229 - MLT1B LTR MaLR 0 390 254 1 993 793 114 15 0 chr5 53495215 53495347 -99041912 + (TC)n Simple_repeat Simple_repeat 2 135 0 1 993 413 138 12 0 chr5 53495360 53495440 -99041819 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 993 247 320 87 0 chr5 53496252 53496355 -99040904 - LTR81C LTR ERV1? -1 1152 1041 1 993 240 292 99 111 chr5 53496355 53496414 -99040845 - MamGypLTR2 LTR Gypsy -1 1188 1029 1 993 888 244 22 126 chr5 53496815 53497092 -99040167 + ORR1E LTR MaLR 1 248 -111 1 993 1377 237 72 12 chr5 53497135 53497455 -99039804 + ORR1D2 LTR MaLR 29 367 -3 1 993 216 0 0 0 chr5 53497709 53497733 -99039526 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 993 510 67 0 0 chr5 53497733 53497808 -99039451 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 1 993 262 338 61 85 chr5 53497809 53497974 -99039285 - MIRb SINE MIR -61 207 47 1 993 239 336 64 27 chr5 53499535 53499645 -99037614 + MIR3 SINE MIR 89 202 -6 1 993 849 234 9 65 chr5 53500010 53500239 -99037020 - B3 SINE B2 0 216 1 1 993 370 325 33 28 chr5 53500253 53500468 -99036791 + MER20 DNA MER1_type 1 216 -3 2 993 650 275 6 6 chr5 53501096 53501257 -99036002 - RSINE1 SINE B4 -2 163 3 3 993 551 218 171 34 chr5 53502254 53502430 -99034829 + Cheshire DNA MER1_type 1 200 -2220 4 993 599 269 50 10 chr5 53502508 53502707 -99034552 + ID_B1 SINE B4 4 210 -14 5 993 249 57 0 0 chr5 53503080 53503115 -99034144 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 993 307 17 83 0 chr5 53503308 53503368 -99033891 + (TTTTG)n Simple_repeat Simple_repeat 2 66 0 7 993 240 333 56 77 chr5 53503700 53503934 -99033325 + MamGypLTR1a LTR Gypsy 14 242 -542 8 993 217 263 109 59 chr5 53504461 53504562 -99032697 - MIRc SINE MIR -53 215 110 9 993 238 238 91 45 chr5 53505545 53505655 -99031604 + MER20B DNA MER1_type 645 759 -24 1 993 281 238 54 98 chr5 53505741 53505853 -99031406 + MIR3 SINE MIR 90 196 -12 1 993 185 243 209 19 chr5 53506650 53506755 -99030504 - MIRb SINE MIR 0 268 144 1 993 331 260 32 52 chr5 53506726 53506896 -99030363 - MIRc SINE MIR -43 225 57 1 993 198 0 0 0 chr5 53507994 53508016 -99029243 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1 993 477 0 0 0 chr5 53508409 53508462 -99028797 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 1 993 492 306 70 48 chr5 53509329 53509556 -99027703 - MIR SINE MIR 0 262 31 1 993 333 303 22 89 chr5 53509848 53510075 -99027184 + L1M5 LINE L1 5269 5478 -686 1 993 747 228 14 7 chr5 53510638 53510784 -99026475 + RSINE1 SINE B4 7 153 -12 1 993 267 79 0 0 chr5 53510791 53510829 -99026430 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1 993 189 0 0 0 chr5 53511277 53511298 -99025961 + (A)n Simple_repeat Simple_repeat 1 21 0 2 993 381 240 150 21 chr5 53511414 53511547 -99025712 + L1MC4a LINE L1 7106 7260 -622 2 993 342 0 0 0 chr5 53511547 53511585 -99025674 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 993 381 240 150 21 chr5 53511585 53511638 -99025621 + L1MC4a LINE L1 7261 7316 -566 2 993 1004 240 55 0 chr5 53511645 53511862 -99025397 + ORR1E LTR MaLR 1 229 -130 2 993 660 13 0 0 chr5 53511872 53511949 -99025310 + (TTCC)n Simple_repeat Simple_repeat 2 78 0 2 993 343 177 62 2 chr5 53511950 53512022 -99025237 + ORR1E LTR MaLR 275 358 -21 2 993 408 197 0 0 chr5 53512120 53512191 -99025068 - PB1D10 SINE Alu -13 104 34 2 993 394 269 55 35 chr5 53512201 53512509 -99024750 + L1MC4a LINE L1 7433 7867 -15 2 993 359 222 25 0 chr5 53513198 53513279 -99023980 + RMER30 DNA MER1_type 20 102 -100 2 993 889 209 0 0 chr5 53513301 53513449 -99023810 + B1_Mur2 SINE Alu 1 148 -1 2 993 435 322 8 0 chr5 53513639 53513760 -99023499 + MTD LTR MaLR 18 139 -280 2 993 606 340 73 34 chr5 53513764 53514118 -99023141 - LTR33A LTR ERVL -87 433 72 2 993 520 308 21 14 chr5 53515607 53515752 -99021507 + ID_B1 SINE B4 77 222 -2 3 993 283 246 0 0 chr5 53515760 53515821 -99021438 + ID SINE ID 1 61 -163 3 993 803 230 102 29 chr5 53516557 53516763 -99020496 - ID_B1 SINE B4 -2 222 2 3 993 369 318 98 13 chr5 53516792 53516841 -99020418 + B4 SINE B4 28 193 -99 3 993 441 235 19 19 chr5 53516841 53516945 -99020314 + B1F2 SINE Alu 1 104 -45 3 993 774 182 4 9 chr5 53516955 53517183 -99020076 + GA-rich Low_complexity Low_complexity 1 226 0 3 993 748 261 54 84 chr5 53517713 53518010 -99019249 + B4A SINE B4 2 289 -3 3 993 189 195 0 0 chr5 53518033 53518074 -99019185 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 993 293 0 27 0 chr5 53518566 53518603 -99018656 + (TAA)n Simple_repeat Simple_repeat 2 39 0 3 993 312 141 45 45 chr5 53519908 53519975 -99017284 - PB1D9 SINE Alu -28 92 26 3 993 382 287 81 8 chr5 53520033 53520156 -99017103 - B1F1 SINE Alu -17 132 1 4 993 190 311 94 78 chr5 53520458 53520650 -99016609 + L2c LINE L2 2976 3170 -217 4 993 202 274 68 14 chr5 53520719 53520793 -99016466 - L2b LINE L2 -5 3370 3293 4 993 623 191 87 87 chr5 53521100 53521295 -99015964 - B3A SINE B2 -2 196 2 4 993 727 184 0 26 chr5 53521724 53521875 -99015384 - B1_Mur1 SINE Alu -1 148 2 4 993 293 334 0 0 chr5 53523452 53523540 -99013719 + ID4 SINE ID 10 97 -55 4 993 339 282 49 139 chr5 53523555 53523687 -99013572 + L1MEg LINE L1 2031 2153 -4264 4 993 739 215 7 14 chr5 53523687 53523833 -99013426 + B1_Mur3 SINE Alu 3 147 -2 4 993 397 245 60 91 chr5 53523833 53524000 -99013259 + L1MEg LINE L1 2137 2298 -4210 4 993 378 100 0 0 chr5 53524030 53524090 -99013169 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 993 405 273 177 99 chr5 53524111 53524390 -99012869 + L1MEg LINE L1 2286 2592 -3729 4 993 1321 78 39 0 chr5 53524390 53524569 -99012690 + B2_Mm2 SINE B2 2 187 -8 4 993 405 273 177 99 chr5 53524569 53524927 -99012332 + L1MEg LINE L1 2593 2973 -3348 4 993 867 206 69 15 chr5 53525338 53525540 -99011719 + B3 SINE B2 3 215 -1 5 993 952 245 19 9 chr5 53525848 53526062 -99011197 + B3 SINE B2 1 216 0 5 993 27 0 0 0 chr5 53526465 53526492 -99010767 + AT_rich Low_complexity Low_complexity 1 27 0 5 993 787 216 119 0 chr5 53526536 53526721 -99010538 - B3 SINE B2 -8 208 2 5 993 317 281 145 38 chr5 53526858 53527017 -99010242 + HAL1-3A_ME LINE L1 2285 2460 -398 5 993 623 200 0 4 chr5 53527644 53527896 -99009363 + (TG)n Simple_repeat Simple_repeat 1 250 0 5 993 213 310 61 9 chr5 53527957 53528071 -99009188 + MIRm SINE MIR 36 155 -121 5 993 425 285 122 8 chr5 53528072 53528203 -99009056 + ID_B1 SINE B4 79 224 0 5 993 363 108 67 0 chr5 53528430 53528498 -99008761 + ORR1A2 LTR MaLR 1 105 -289 5 993 2044 129 3 10 chr5 53528498 53528836 -99008423 + ORR1A2 LTR MaLR 1 327 0 5 993 258 192 0 0 chr5 53531298 53531350 -99005909 + (CAT)n Simple_repeat Simple_repeat 1 52 0 5 993 186 268 31 104 chr5 53532149 53532245 -99005014 - MIRb SINE MIR -160 108 20 6 993 538 105 13 0 chr5 53532468 53532544 -99004715 + MTC LTR MaLR 1 77 -344 6 993 686 165 12 1 chr5 53532548 53532668 -99004591 + B1_Mur3 SINE Alu 21 139 -10 6 993 194 0 0 37 chr5 53532678 53532705 -99004554 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 6 993 2440 103 38 3 chr5 53532706 53533048 -99004211 + MTC LTR MaLR 68 421 0 6 993 283 344 62 47 chr5 53533958 53534086 -99003173 + L2b LINE L2 3241 3370 -5 6 993 517 214 0 0 chr5 53534398 53534487 -99002772 + 5S rRNA rRNA 1 89 -32 6 993 622 247 39 13 chr5 53535494 53535650 -99001609 + Lx8 LINE L1 6919 7078 -395 6 993 566 240 11 125 chr5 53535651 53535691 -99001568 - RSINE1 SINE B4 -8 157 121 6 993 279 0 0 0 chr5 53535691 53535722 -99001537 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 993 566 240 11 125 chr5 53535722 53535857 -99001402 - RSINE1 SINE B4 -45 120 2 6 993 780 248 19 23 chr5 53535878 53536093 -99001166 - B3 SINE B2 -1 215 2 7 993 225 269 167 0 chr5 53536108 53536186 -99001073 + Lx8 LINE L1 7074 7164 -309 6 993 243 146 0 0 chr5 53536269 53536310 -99000949 + (TCTCCC)n Simple_repeat Simple_repeat 2 42 0 7 993 241 324 0 39 chr5 53537366 53537443 -98999816 + MARNA DNA Mariner 455 528 -58 7 993 189 271 119 0 chr5 53539036 53539095 -98998164 + MIRb SINE MIR 112 177 -91 7 993 415 213 128 0 chr5 53539144 53539238 -98998021 + ID_B1 SINE B4 98 203 -21 7 993 378 0 0 0 chr5 53539705 53539747 -98997512 + (TGGGGG)n Simple_repeat Simple_repeat 6 47 0 7 993 276 30 0 0 chr5 53540099 53540132 -98997127 + (TGGGGG)n Simple_repeat Simple_repeat 2 34 0 7 993 378 278 19 32 chr5 53540132 53540288 -98996971 + GA-rich Low_complexity Low_complexity 3 156 0 7 993 211 232 42 28 chr5 53540246 53540317 -98996942 + (CAGGA)n Simple_repeat Simple_repeat 2 73 0 7 993 424 314 135 13 chr5 53540938 53541167 -98996092 - Lx5 LINE L1 -15 7035 6779 7 993 472 278 113 5 chr5 53541175 53541388 -98995871 + L1MA5 LINE L1 6051 6286 -14 8 993 300 154 0 0 chr5 53541412 53541464 -98995795 + A-rich Low_complexity Low_complexity 1 52 0 8 993 320 320 7 26 chr5 53541552 53541706 -98995553 + (CATA)n Simple_repeat Simple_repeat 2 152 0 8 993 606 322 47 132 chr5 53541706 53542046 -98995213 - MER2 DNA MER2_type -8 337 27 8 993 326 273 11 22 chr5 53542081 53542171 -98995088 - MLT1B LTR MaLR -299 91 3 8 993 629 131 9 0 chr5 53542504 53542611 -98994648 + (GA)n Simple_repeat Simple_repeat 2 109 0 8 993 335 157 0 14 chr5 53543514 53543585 -98993674 + CT-rich Low_complexity Low_complexity 3 72 0 8 993 704 229 128 20 chr5 53543595 53543791 -98993468 - ID_B1 SINE B4 -7 217 1 8 993 386 302 70 10 chr5 53544099 53544256 -98993003 + L1MEe LINE L1 2015 2154 -4012 8 993 207 0 0 0 chr5 53544525 53544548 -98992711 + (T)n Simple_repeat Simple_repeat 1 23 0 8 993 450 53 0 0 chr5 53544883 53544940 -98992319 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 9 993 1013 80 72 0 chr5 53544941 53545079 -98992180 - B1_Mus1 SINE Alu 0 148 1 9 993 351 0 0 0 chr5 53545704 53545743 -98991516 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 993 1174 227 147 70 chr5 53545805 53546032 -98991227 + MLT2B1 LTR ERVL 1 233 -287 9 993 180 0 0 0 chr5 53546032 53546052 -98991207 + (CCTG)n Simple_repeat Simple_repeat 1 20 0 9 993 1174 227 147 70 chr5 53546052 53546307 -98990952 + MLT2B1 LTR ERVL 234 519 -1 9 993 199 414 18 31 chr5 53547492 53547714 -98989545 - MIR SINE MIR 0 262 44 9 993 414 0 0 0 chr5 53548256 53548302 -98988957 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 993 890 281 62 18 chr5 53548379 53548654 -98988605 + B4 SINE B4 2 288 -4 9 993 540 0 0 0 chr5 53548696 53548756 -98988503 + (GA)n Simple_repeat Simple_repeat 2 61 0 9 993 681 250 18 42 chr5 53549335 53549502 -98987757 - RSINE1 SINE B4 0 165 3 9 993 966 272 21 39 chr5 53549580 53549859 -98987400 + B4A SINE B4 6 279 -13 1 993 432 55 0 0 chr5 53549888 53549943 -98987316 + (TGAA)n Simple_repeat Simple_repeat 4 58 0 1 993 614 268 15 49 chr5 53550101 53550305 -98986954 - RMER30 DNA MER1_type -1 201 5 1 993 379 239 45 18 chr5 53550314 53550425 -98986834 - MER2 DNA MER2_type -134 211 98 1 993 473 217 55 55 chr5 53552203 53552330 -98984929 - MER2 DNA MER2_type -162 183 57 1 993 450 93 11 23 chr5 53552426 53552514 -98984745 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 1 993 245 289 0 38 chr5 53554463 53554484 -98982775 + ID SINE ID 63 80 -144 1 993 408 255 56 9 chr5 53554484 53554591 -98982668 + PB1D7 SINE Alu 1 112 -8 1 993 1042 197 117 20 chr5 53554602 53554851 -98982408 + B4 SINE B4 5 277 -15 1 993 1168 152 68 50 chr5 53554992 53555214 -98982045 - URR1A DNA MER1_type 0 226 1 1 993 1464 295 102 18 chr5 53555712 53556368 -98980891 + L1MB2 LINE L1 5443 6153 -18 1 993 1075 206 31 0 chr5 53556722 53556916 -98980343 + B3 SINE B2 2 201 -15 1 993 387 0 0 0 chr5 53556917 53556960 -98980299 + (TAA)n Simple_repeat Simple_repeat 3 45 0 1 993 342 224 53 0 chr5 53557062 53557138 -98980121 + ID4_ SINE ID 4 83 0 1 993 393 245 153 35 chr5 53557165 53557309 -98979950 + RSINE1 SINE B4 3 163 -2 1 993 581 287 122 34 chr5 53557904 53558167 -98979092 - B4A SINE B4 -4 288 3 1 993 213 181 0 0 chr5 53559653 53559700 -98977559 - ID2 SINE ID -36 47 1 1 993 258 81 0 0 chr5 53559777 53559814 -98977445 + (TCC)n Simple_repeat Simple_repeat 2 38 0 1 993 515 297 13 7 chr5 53559814 53559963 -98977296 + HAL1-2a_MD LINE L1 2353 2502 -522 1 993 256 364 34 0 chr5 53559977 53560095 -98977164 - MIRc SINE MIR -119 149 28 1 993 214 308 71 71 chr5 53560446 53560586 -98976673 + L2b LINE L2 3055 3194 -181 1 993 227 331 87 80 chr5 53561178 53561316 -98975943 - Charlie8 DNA MER1_type -2244 184 46 1 993 905 280 73 59 chr5 53562379 53562652 -98974607 - B4 SINE B4 -6 286 10 1 993 630 289 16 8 chr5 53562697 53562850 -98974409 - RSINE1 SINE B4 -144 148 3 1 993 278 278 87 97 chr5 53564490 53564685 -98972574 + MER112 DNA MER1_type 7 199 -62 1 993 369 311 22 15 chr5 53564725 53564859 -98972400 + B1F1 SINE Alu 1 135 -14 1 993 423 200 26 95 chr5 53564968 53565084 -98972175 - PB1D10 SINE Alu 0 117 10 1 993 684 243 152 6 chr5 53566846 53567024 -98970235 + ID_B1 SINE B4 1 204 -20 1 993 237 33 0 0 chr5 53567026 53567056 -98970203 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 993 234 208 0 0 chr5 53567056 53567109 -98970150 + GA-rich Low_complexity Low_complexity 2 54 0 1 993 270 0 0 0 chr5 53567530 53567560 -98969699 + (G)n Simple_repeat Simple_repeat 1 30 0 1 993 234 0 0 0 chr5 53567696 53567722 -98969537 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 993 471 118 0 0 chr5 53567864 53567940 -98969319 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 993 229 208 42 0 chr5 53568463 53568511 -98968748 + MIR SINE MIR 191 240 -22 1 993 259 338 78 14 chr5 53568549 53568690 -98968569 + Tigger13a DNA MER2_type 147 296 -475 1 993 453 247 103 0 chr5 53568719 53568816 -98968443 + PB1 SINE Alu 21 127 0 1 993 300 27 0 0 chr5 53568879 53568916 -98968343 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 993 469 324 117 27 chr5 53569199 53569456 -98967803 - Tigger7 DNA MER2_type -11 2480 2201 1 993 811 268 129 14 chr5 53569455 53569803 -98967456 - Tigger7 DNA MER2_type -2094 397 1 1 993 234 223 108 72 chr5 53571004 53571115 -98966144 - MER96B DNA hAT -233 184 70 1 993 387 0 0 0 chr5 53571884 53571927 -98965332 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 993 198 0 0 0 chr5 53572517 53572539 -98964720 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 993 643 293 0 0 chr5 53572597 53572747 -98964512 + RSINE1 SINE B4 11 160 -5 1 993 279 0 0 0 chr5 53573907 53573938 -98963321 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 993 216 0 0 0 chr5 53573938 53573961 -98963298 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 993 364 309 37 75 chr5 53574179 53574340 -98962919 + MLT1A LTR MaLR 17 171 -203 1 993 555 240 72 0 chr5 53574337 53574462 -98962797 + RSINE1 SINE B4 12 145 -20 1 993 350 42 0 20 chr5 53574476 53574525 -98962734 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 993 189 0 0 0 chr5 53576256 53576277 -98960982 + (CAAGC)n Simple_repeat Simple_repeat 2 22 0 1 993 378 187 95 63 chr5 53576286 53576402 -98960857 + B1F1 SINE Alu 10 133 -16 1 993 720 200 6 11 chr5 53576417 53576594 -98960665 + GA-rich Low_complexity Low_complexity 3 178 0 1 993 506 283 174 19 chr5 53576711 53576936 -98960323 - Tigger13a DNA MER2_type -192 579 322 1 993 189 0 0 0 chr5 53576936 53576957 -98960302 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 993 506 283 174 19 chr5 53576957 53577041 -98960218 - Tigger13a DNA MER2_type -450 321 222 1 993 734 221 145 74 chr5 53577953 53578222 -98959037 + B4 SINE B4 3 290 -2 1 993 223 319 143 0 chr5 53579947 53580038 -98957221 - MIRb SINE MIR -1 261 158 1 993 1005 231 58 12 chr5 53581105 53581364 -98955895 - Tigger5 DNA MER2_type 0 2406 2136 1 993 498 326 82 33 chr5 53581397 53581667 -98955592 + B4A SINE B4 2 284 -8 1 993 363 89 0 0 chr5 53581681 53581737 -98955522 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 993 1203 79 0 0 chr5 53581924 53582088 -98955171 + (TTCC)n Simple_repeat Simple_repeat 3 166 0 1 993 218 313 15 0 chr5 53582091 53582158 -98955101 + L2a LINE L2 3358 3425 -1 1 993 288 137 0 0 chr5 53582340 53582391 -98954868 + (CATA)n Simple_repeat Simple_repeat 3 53 0 1 993 405 0 0 0 chr5 53582901 53582946 -98954313 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 993 800 141 104 0 chr5 53582990 53583125 -98954134 - B1_Mur3 SINE Alu 0 149 1 1 993 360 111 0 0 chr5 53583160 53583214 -98954045 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 1 993 364 308 32 83 chr5 53583217 53583373 -98953886 - B4 SINE B4 -102 190 43 1 993 350 306 222 91 chr5 53583984 53584236 -98953023 + B4A SINE B4 1 285 -7 1 993 229 237 26 0 chr5 53584305 53584381 -98952878 + L1MC LINE L1 5748 5825 -2057 1 993 430 311 35 69 chr5 53584945 53585118 -98952141 + MIRc SINE MIR 102 268 0 1 993 407 225 164 62 chr5 53585386 53585514 -98951745 + RSINE1 SINE B4 8 148 -17 1 993 216 162 0 0 chr5 53586007 53586044 -98951215 + L2a LINE L2 3112 3148 -278 1 993 308 367 46 42 chr5 53586152 53586324 -98950935 + MIR3 SINE MIR 14 180 -28 1 993 2861 95 19 24 chr5 53586952 53587374 -98949885 + L1_Mus4 LINE L1 6205 6624 -12 1 993 338 339 31 58 chr5 53587505 53587696 -98949563 - L2a LINE L2 -278 3148 2963 1 993 222 37 0 0 chr5 53589343 53589370 -98947889 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 993 250 343 28 51 chr5 53589378 53589593 -98947666 + L1MD2 LINE L1 6138 6347 -12 1 993 220 202 37 37 chr5 53590708 53590790 -98946469 + CT-rich Low_complexity Low_complexity 3 84 0 1 993 637 238 0 0 chr5 53590870 53590996 -98946263 + RSINE1 SINE B4 2 127 -38 1 993 402 21 0 0 chr5 53591000 53591047 -98946212 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 993 504 293 127 100 chr5 53592502 53593063 -98944196 + L1MB4 LINE L1 5421 5996 -184 1 993 467 306 7 7 chr5 53593235 53593370 -98943889 + B1_Mur1 SINE Alu 2 136 -13 1 993 415 212 190 0 chr5 53593385 53593522 -98943737 + RSINE1 SINE B4 3 165 0 1 993 321 241 161 0 chr5 53593547 53593634 -98943625 + HAL1-3A_ME LINE L1 1976 2076 -782 1 993 442 329 135 3 chr5 53594209 53594505 -98942754 + L1MC LINE L1 5393 5727 -2155 1 993 1160 88 0 7 chr5 53595099 53595247 -98942012 + B1_Mus1 SINE Alu 2 148 0 1 993 873 262 22 4 chr5 53596273 53596503 -98940756 + MER33 DNA MER1_type 71 304 -20 1 993 350 317 64 16 chr5 53596581 53596706 -98940553 - MER2 DNA MER2_type 0 345 215 1 993 295 299 0 49 chr5 53596719 53596800 -98940459 - B4 SINE B4 0 292 216 1 993 560 294 0 53 chr5 53596841 53596992 -98940267 - B4 SINE B4 -69 223 81 1 993 809 228 0 0 chr5 53596998 53597143 -98940116 - B1_Mur1 SINE Alu -1 148 4 1 993 435 253 0 11 chr5 53597176 53597264 -98939995 - B4 SINE B4 -204 88 2 1 993 430 261 92 8 chr5 53597288 53597419 -98939840 - MER2 DNA MER2_type -170 175 34 1 993 347 279 65 65 chr5 53601751 53601889 -98935370 + MIRb SINE MIR 88 225 -43 1 993 332 88 18 0 chr5 53602069 53602126 -98935133 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 993 189 0 0 0 chr5 53602156 53602177 -98935082 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 993 345 24 0 0 chr5 53602177 53602218 -98935041 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 993 441 0 0 0 chr5 53603048 53603097 -98934162 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 993 198 0 0 0 chr5 53604481 53604503 -98932756 + (CTG)n Simple_repeat Simple_repeat 1 22 0 1 993 36 0 0 0 chr5 53604623 53604659 -98932600 + GC_rich Low_complexity Low_complexity 1 36 0 1 993 293 127 0 45 chr5 53604663 53604729 -98932530 + (CCG)n Simple_repeat Simple_repeat 2 64 0 1 993 291 311 0 45 chr5 53604931 53605086 -98932173 + C-rich Low_complexity Low_complexity 4 151 0 1 993 201 344 80 44 chr5 53606136 53606273 -98930986 - MER5A DNA MER1_type -4 185 44 1 993 531 250 8 25 chr5 53606594 53606713 -98930546 - PB1D10 SINE Alu 0 117 1 1 993 361 209 225 65 chr5 53606713 53606732 -98930527 - ID_B1 SINE B4 0 224 65 1 993 312 305 11 0 chr5 53607893 53607988 -98929271 + PB1D10 SINE Alu 11 106 -11 1 993 255 312 0 0 chr5 53607991 53608055 -98929204 + RSINE1 SINE B4 17 80 -85 2 993 768 256 66 33 chr5 53608063 53608334 -98928925 + B4A SINE B4 3 282 -10 2 993 446 0 19 0 chr5 53608369 53608423 -98928836 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2 994 1967 162 75 63 chr5 53608713 53609128 -98928131 - MTC LTR MaLR 0 421 2 2 994 216 229 16 32 chr5 53609299 53609362 -98927897 + CT-rich Low_complexity Low_complexity 3 64 0 2 994 408 40 0 0 chr5 53610820 53610870 -98926389 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 994 299 329 104 52 chr5 53610911 53611065 -98926194 - MIR SINE MIR -55 207 46 2 994 270 290 54 30 chr5 53611328 53611506 -98925753 + MIRc SINE MIR 17 202 -66 2 994 286 330 72 85 chr5 53611716 53612034 -98925225 + MLT1H2 LTR MaLR 176 489 0 2 994 792 141 269 6 chr5 53612066 53612237 -98925022 - B3 SINE B2 0 216 1 2 994 211 289 0 0 chr5 53612270 53612322 -98924937 - L4 LINE RTE -205 1824 1773 2 994 342 373 87 62 chr5 53613329 53613718 -98923541 + MLT1C LTR MaLR 8 412 -55 2 994 664 270 88 0 chr5 53613718 53613922 -98923337 - ID_B1 SINE B4 -2 222 1 2 994 342 373 87 62 chr5 53613922 53613981 -98923278 + MLT1C LTR MaLR 413 467 0 2 994 219 69 0 0 chr5 53615604 53615633 -98921626 + (ATG)n Simple_repeat Simple_repeat 3 31 0 2 994 24 32 0 0 chr5 53615729 53615760 -98921499 + AT_rich Low_complexity Low_complexity 1 31 0 2 994 233 281 75 73 chr5 53616332 53616438 -98920821 + B1_Mur2 SINE Alu 5 110 -39 2 994 760 153 73 0 chr5 53617301 53617438 -98919821 - B1_Mus2 SINE Alu 0 147 1 2 994 240 291 59 36 chr5 53617443 53617550 -98919709 - B1F1 SINE Alu 0 120 16 2 994 811 284 140 14 chr5 53618521 53618807 -98918452 + MLT1A0 LTR MaLR 43 364 -1 2 994 205 266 0 12 chr5 53618903 53618983 -98918276 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 994 1124 61 23 4 chr5 53619002 53619264 -98917995 + (TCTA)n Simple_repeat Simple_repeat 1 267 0 2 994 184 316 83 25 chr5 53619503 53619623 -98917636 - MIRm SINE MIR -103 173 47 2 994 546 16 0 0 chr5 53619905 53619968 -98917291 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 2 994 1104 251 38 48 chr5 53620184 53620477 -98916782 + B4A SINE B4 3 292 0 2 994 322 268 79 18 chr5 53620645 53620759 -98916500 + MER20 DNA MER1_type 1 121 -98 2 994 468 0 0 0 chr5 53620914 53620966 -98916293 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 994 250 274 0 0 chr5 53620995 53621046 -98916213 - B4A SINE B4 -18 274 224 2 994 441 0 0 0 chr5 53621096 53621145 -98916114 + (CTA)n Simple_repeat Simple_repeat 2 50 0 2 994 728 141 129 24 chr5 53621160 53621284 -98915975 - B1_Mur4 SINE Alu -12 138 2 2 994 876 205 148 10 chr5 53621285 53621374 -98915885 - B4A SINE B4 -59 233 125 2 994 261 0 0 0 chr5 53621374 53621403 -98915856 + (CCCTG)n Simple_repeat Simple_repeat 2 30 0 2 994 876 205 148 10 chr5 53621403 53621515 -98915744 - B4A SINE B4 -168 124 4 2 994 223 301 103 54 chr5 53622228 53622432 -98914827 + L2b LINE L2 2953 3166 -209 2 994 422 277 161 14 chr5 53622642 53622785 -98914474 - RSINE1 SINE B4 0 165 2 2 994 239 210 65 0 chr5 53623993 53624055 -98913204 + B1F SINE Alu 33 98 -51 2 994 677 170 0 7 chr5 53624119 53624261 -98912998 + GA-rich Low_complexity Low_complexity 2 142 0 2 994 268 221 0 29 chr5 53624653 53624723 -98912536 + ORR1E LTR MaLR 64 131 -228 2 994 186 43 0 0 chr5 53624723 53624746 -98912513 + (TGGGGG)n Simple_repeat Simple_repeat 1 23 0 2 994 263 295 31 21 chr5 53624831 53624928 -98912331 + ORR1E LTR MaLR 278 375 -4 2 994 358 316 52 13 chr5 53625025 53625274 -98911985 + L1ME3B LINE L1 5658 5923 -250 2 994 722 123 43 26 chr5 53625280 53625397 -98911862 - B1_Mur4 SINE Alu -31 119 1 2 994 416 239 6 18 chr5 53625753 53625919 -98911340 + (TG)n Simple_repeat Simple_repeat 1 164 0 2 994 559 210 151 0 chr5 53626349 53626468 -98910791 + B1_Mur1 SINE Alu 13 149 0 2 994 459 312 129 0 chr5 53626586 53626756 -98910503 - MER58A DNA MER1_type -32 192 1 2 994 297 68 0 0 chr5 53627160 53627204 -98910055 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 2 994 450 0 0 0 chr5 53627786 53627836 -98909423 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 994 396 0 0 0 chr5 53627836 53627879 -98909380 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 994 231 103 0 0 chr5 53628339 53628378 -98908881 + (CGGGGG)n Simple_repeat Simple_repeat 3 41 0 2 994 201 222 0 0 chr5 53629078 53629114 -98908145 + (GCCTAA)n Simple_repeat Simple_repeat 4 39 0 2 994 411 98 0 0 chr5 53629202 53629263 -98907996 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 994 793 217 115 17 chr5 53629583 53629817 -98907442 + L1MA9 LINE L1 6052 6308 -4 2 994 391 267 122 103 chr5 53629817 53630030 -98907229 - MER58D DNA MER1_type -154 232 16 2 994 369 299 85 28 chr5 53630313 53630454 -98906805 - MLT1A0 LTR MaLR 0 365 217 2 994 262 250 231 0 chr5 53630797 53630901 -98906358 - MIR SINE MIR -67 195 68 2 994 795 21 0 0 chr5 53632068 53632161 -98905098 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 994 225 0 0 0 chr5 53633178 53633203 -98904056 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 994 457 325 70 58 chr5 53634550 53635079 -98902180 + MLT1H LTR MaLR 40 555 0 2 994 1009 266 80 0 chr5 53635493 53635767 -98901492 - MER2 DNA MER2_type -12 333 38 2 994 817 289 43 0 chr5 53635798 53636009 -98901250 - MLT2D LTR ERVL -112 302 83 2 994 951 249 19 9 chr5 53636010 53636225 -98901034 + ID_B1 SINE B4 1 217 -7 2 994 227 31 31 0 chr5 53636246 53636278 -98900981 + (GGGAA)n Simple_repeat Simple_repeat 3 35 0 2 994 1083 117 0 0 chr5 53636278 53636458 -98900801 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 2 994 330 305 0 0 chr5 53636459 53636541 -98900718 - MLT2D LTR ERVL -327 87 6 2 994 719 322 115 57 chr5 53636551 53636976 -98900283 + MLT1C LTR MaLR 6 455 -12 2 994 217 262 32 16 chr5 53637359 53637421 -98899838 + MIRb SINE MIR 20 82 -186 2 994 459 287 84 32 chr5 53637446 53637601 -98899658 - RSINE1 SINE B4 0 165 3 2 994 519 173 8 16 chr5 53637680 53637790 -98899469 + GA-rich Low_complexity Low_complexity 3 112 0 2 994 1107 129 0 0 chr5 53637790 53637968 -98899291 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 2 994 519 173 8 16 chr5 53637968 53637986 -98899273 + polypurine Low_complexity Low_complexity 113 129 0 2 994 1327 236 75 16 chr5 53637986 53638292 -98898967 - MTE2b LTR MaLR -55 324 1 2 994 717 260 36 10 chr5 53638776 53638970 -98898289 + ID_B1 SINE B4 24 222 -2 2 994 230 211 111 14 chr5 53639827 53639899 -98897360 - MIRb SINE MIR -71 197 119 2 994 210 204 114 0 chr5 53640060 53640104 -98897155 - MIRb SINE MIR -183 85 37 2 994 448 280 93 71 chr5 53640124 53640393 -98896866 + B4 SINE B4 1 275 -17 2 994 451 188 81 30 chr5 53641378 53641477 -98895782 - L2b LINE L2 -1 3374 3271 2 994 389 296 113 84 chr5 53641609 53641986 -98895273 - MLT1A LTR MaLR 0 374 1 2 994 196 343 30 0 chr5 53642030 53642097 -98895162 - L2a LINE L2 -345 3081 3013 2 994 378 0 0 0 chr5 53642219 53642261 -98894998 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 994 641 284 99 81 chr5 53642265 53642537 -98894722 - B4 SINE B4 -14 278 2 2 994 209 211 0 0 chr5 53643128 53643166 -98894093 + T-rich Low_complexity Low_complexity 4 41 0 2 994 371 248 33 107 chr5 53643834 53643851 -98893408 + MLT1A LTR MaLR 38 47 -318 2 994 1800 226 36 19 chr5 53643851 53644262 -98892997 + MTD LTR MaLR 2 419 0 2 994 471 289 60 62 chr5 53644262 53644673 -98892586 + MLT1A LTR MaLR 48 405 -3 2 994 367 220 78 16 chr5 53644685 53644815 -98892444 + MIR SINE MIR 71 212 -56 2 994 760 211 338 32 chr5 53644839 53645156 -98892103 - MTD LTR MaLR 0 419 6 2 994 541 287 15 15 chr5 53645603 53645734 -98891525 + RSINE1 SINE B4 1 131 -34 2 994 261 57 0 0 chr5 53645857 53645892 -98891367 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 994 1120 80 0 0 chr5 53645892 53646029 -98891230 - B1_Mus1 SINE Alu -10 138 2 2 994 243 278 66 96 chr5 53646833 53646877 -98890382 - YREP_Mm Unknown Unknown -1465 347 247 2 994 284 287 20 50 chr5 53646877 53646976 -98890283 + MT2B LTR ERVL 169 264 -337 2 994 643 164 52 0 chr5 53646891 53647007 -98890252 + B1_Mur1 SINE Alu 28 149 0 2 994 243 278 66 96 chr5 53646976 53647000 -98890259 - YREP_Mm Unknown Unknown -1465 246 186 2 994 432 0 0 0 chr5 53647009 53647057 -98890202 + (TATG)n Simple_repeat Simple_repeat 2 49 0 2 994 823 242 0 0 chr5 53647058 53647207 -98890052 + RSINE1 SINE B4 4 152 -13 2 994 849 155 0 0 chr5 53647220 53647368 -98889891 + (TA)n Simple_repeat Simple_repeat 1 148 0 2 994 581 280 0 8 chr5 53647409 53647542 -98889717 + B3A SINE B2 51 182 -16 2 994 231 235 72 124 chr5 53647979 53648076 -98889183 + MamRep605 Unknown Unknown 281 372 -504 2 994 256 320 58 10 chr5 53648553 53648657 -98888602 + MLT1A1 LTR MaLR 300 408 0 2 994 808 208 67 72 chr5 53648901 53649124 -98888135 - URR1B DNA MER1_type -2 223 2 2 994 230 51 0 49 chr5 53649186 53649227 -98888032 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 2 994 261 0 0 0 chr5 53650884 53650913 -98886346 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 994 429 20 0 0 chr5 53650991 53651041 -98886218 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 994 234 246 72 0 chr5 53651140 53651209 -98886050 + ID2 SINE ID 3 76 -7 2 994 2344 86 41 0 chr5 53651810 53652124 -98885135 + ORR1A2 LTR MaLR 1 327 0 2 994 197 319 34 34 chr5 53652632 53652778 -98884481 - L4 LINE RTE -1242 787 642 2 994 1241 198 86 102 chr5 53653176 53653548 -98883711 + MTEa LTR MaLR 6 371 -8 2 994 207 0 0 0 chr5 53653906 53653929 -98883330 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 994 1102 215 84 120 chr5 53654190 53654581 -98882678 - MTE2a LTR MaLR -2 377 1 3 994 1217 252 15 19 chr5 53654984 53655255 -98882004 + B4 SINE B4 1 270 -22 3 994 459 35 0 0 chr5 53655256 53655313 -98881946 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 994 235 254 18 0 chr5 53655416 53655471 -98881788 + RLTR19C LTR ERVK 42 97 -409 3 994 253 284 27 0 chr5 53656034 53656108 -98881151 + RLTR33 LTR ERVK 516 591 -87 3 994 3051 40 2 108 chr5 53656286 53656729 -98880530 + MTA_Mm LTR MaLR 1 396 0 3 994 228 241 16 49 chr5 53657178 53657239 -98880020 + L2c LINE L2 3288 3346 -41 3 994 279 193 202 24 chr5 53658951 53659100 -98878159 - MIR SINE MIR -60 202 9 3 994 228 302 76 86 chr5 53659910 53660015 -98877244 + MER20 DNA MER1_type 51 154 -65 3 994 209 122 24 0 chr5 53660255 53660296 -98876963 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 3 994 210 37 0 0 chr5 53660504 53660531 -98876728 + (A)n Simple_repeat Simple_repeat 1 27 0 3 994 381 277 18 70 chr5 53660946 53661117 -98876142 - RSINE1 SINE B4 -2 163 2 3 994 1998 167 25 82 chr5 53661529 53661921 -98875338 - ORR1C1 LTR MaLR -8 370 1 3 994 4135 38 0 14 chr5 53663186 53663688 -98873571 - L1Md_F3 LINE L1 -2 6582 6088 3 994 609 274 41 51 chr5 53665611 53665926 -98871333 - L1MC4 LINE L1 -27 8015 7704 3 994 336 191 67 28 chr5 53669822 53669932 -98867327 - PB1D9 SINE Alu -1 148 44 3 994 921 219 57 86 chr5 53670073 53670508 -98866751 - MT2A LTR ERVL -12 589 1 3 994 241 222 0 85 chr5 53670597 53670715 -98866544 + CT-rich Low_complexity Low_complexity 3 110 0 3 994 555 382 72 7 chr5 53670809 53671099 -98866160 + L4 LINE RTE 676 984 -1045 3 994 717 274 93 22 chr5 53671897 53672166 -98865093 + B4A SINE B4 5 292 0 3 994 369 186 229 147 chr5 53672681 53672851 -98864408 + B3 SINE B2 5 188 -7 3 994 303 275 0 59 chr5 53673693 53673778 -98863481 + ID4_ SINE ID 1 80 -3 3 994 286 238 65 65 chr5 53673826 53673934 -98863325 + ID_B1 SINE B4 96 203 -21 3 994 241 274 0 0 chr5 53673957 53674008 -98863251 + polypurine Low_complexity Low_complexity 2 52 0 3 994 237 238 63 0 chr5 53675356 53675419 -98861840 - ID4 SINE ID -16 67 1 3 994 266 318 0 0 chr5 53675442 53675508 -98861751 - B1F SINE Alu -10 139 74 3 994 387 0 0 0 chr5 53675781 53675824 -98861435 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 994 237 196 0 0 chr5 53676167 53676218 -98861041 + T-rich Low_complexity Low_complexity 1 51 0 3 994 657 38 0 0 chr5 53676688 53676768 -98860491 + (TCCC)n Simple_repeat Simple_repeat 4 83 0 3 994 399 41 0 0 chr5 53676782 53676831 -98860428 + (TTTTC)n Simple_repeat Simple_repeat 1 49 0 3 994 980 264 77 4 chr5 53677258 53677592 -98859667 + MLT1B LTR MaLR 12 443 -24 3 994 891 232 124 12 chr5 53677719 53677976 -98859283 + B4 SINE B4 5 290 -2 3 994 2144 146 3 40 chr5 53678237 53678607 -98858652 - ORR1B2 LTR MaLR -11 356 1 3 994 578 310 29 0 chr5 53678722 53678896 -98858363 + MLT1B LTR MaLR 449 627 -26 3 994 310 254 0 27 chr5 53679655 53679728 -98857531 - ORR1E LTR MaLR -288 71 1 3 994 182 373 17 0 chr5 53680095 53680154 -98857105 - MIRm SINE MIR -197 79 20 3 994 450 0 0 0 chr5 53681192 53681242 -98856017 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 994 404 265 102 12 chr5 53681255 53681421 -98855838 - MTEb LTR MaLR 0 359 198 3 994 195 42 0 0 chr5 53681682 53681706 -98855553 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 3 994 307 305 42 0 chr5 53681920 53682038 -98855221 + L1MC4 LINE L1 7130 7252 -790 3 994 587 288 97 55 chr5 53682363 53682620 -98854639 + B4A SINE B4 10 277 -15 3 994 231 114 0 0 chr5 53682979 53683023 -98854236 + (T)n Simple_repeat Simple_repeat 1 44 0 3 994 1273 21 0 0 chr5 53683025 53683168 -98854091 - B1_Mm SINE Alu -4 143 1 3 994 3157 181 120 36 chr5 53683181 53683681 -98853578 - RMER1B Other Other 0 1066 541 3 994 2837 83 162 0 chr5 53683681 53684139 -98853120 - RLTR47_MM LTR ERV1 0 532 1 3 994 3157 181 120 36 chr5 53684139 53684387 -98852872 - RMER1B Other Other -526 540 255 3 994 1183 82 0 0 chr5 53684482 53684629 -98852630 + B1_Mus2 SINE Alu 1 147 0 3 994 324 239 99 48 chr5 53684744 53684855 -98852404 + PB1D10 SINE Alu 8 122 -27 3 994 478 269 170 30 chr5 53685035 53685265 -98851994 - L1MB2 LINE L1 -326 5845 5583 3 994 237 315 117 0 chr5 53685280 53685391 -98851868 - L1MB2 LINE L1 -637 5534 5411 3 994 1269 314 59 18 chr5 53686069 53686507 -98850752 - MLT1C LTR MaLR -4 463 8 3 994 1009 233 88 154 chr5 53686600 53687260 -98849999 - RLTR18 LTR ERVK 0 616 1 3 994 334 300 71 48 chr5 53687429 53687615 -98849644 + MIR SINE MIR 5 192 -76 3 994 241 261 10 154 chr5 53688214 53688318 -98848941 - MLT1A1 LTR MaLR -16 392 304 3 994 466 248 80 40 chr5 53689028 53689179 -98848080 - RMER5 LTR ERV1 0 534 378 3 994 240 111 0 0 chr5 53689180 53689225 -98848034 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 3 994 274 333 10 48 chr5 53689232 53689336 -98847923 - B3 SINE B2 -54 162 63 3 994 310 302 0 59 chr5 53689355 53689457 -98847802 + B4A SINE B4 187 282 -10 3 994 243 0 0 0 chr5 53689491 53689518 -98847741 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 994 187 133 0 0 chr5 53690735 53690765 -98846494 + MER5A DNA MER1_type 1 30 -159 3 994 523 277 195 18 chr5 53690792 53691089 -98846170 + MLT1A0 LTR MaLR 3 359 -6 3 994 243 256 101 5 chr5 53691270 53691369 -98845890 + PB1D10 SINE Alu 7 114 -35 3 994 397 256 0 0 chr5 53691396 53691474 -98845785 + ID4_ SINE ID 5 82 -1 3 994 1147 71 0 0 chr5 53691775 53691916 -98845343 + B1_Mus2 SINE Alu 1 141 -6 3 994 243 0 0 0 chr5 53691922 53691949 -98845310 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 994 265 193 25 0 chr5 53692083 53692158 -98845101 - MLT2B4 LTR ERVL -2 727 638 3 994 217 188 47 12 chr5 53692161 53692247 -98845012 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 994 247 173 58 23 chr5 53692322 53692494 -98844765 + (TA)n Simple_repeat Simple_repeat 1 178 0 3 994 212 167 40 40 chr5 53692527 53692652 -98844607 + (TA)n Simple_repeat Simple_repeat 1 125 0 3 994 634 271 143 43 chr5 53692718 53693141 -98844118 - MLT2B4 LTR ERVL -39 679 163 3 994 506 297 40 98 chr5 53693172 53693396 -98843863 - MER20 DNA MER1_type -6 213 3 3 994 1141 108 22 28 chr5 53693485 53693666 -98843593 - URR1A DNA MER1_type 0 226 47 3 994 279 191 20 160 chr5 53693879 53693979 -98843280 - URR1A DNA MER1_type -140 86 1 3 994 379 250 223 0 chr5 53694558 53694670 -98842589 + MER21B LTR ERV1 16 152 -711 3 994 222 253 62 157 chr5 53694837 53695015 -98842244 - L2c LINE L2 -3 3384 3224 3 994 203 32 0 61 chr5 53695046 53695079 -98842180 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 3 994 580 265 60 56 chr5 53695313 53695545 -98841714 + MamRep137 DNA TcMar? 111 343 -101 3 994 198 0 0 0 chr5 53695553 53695575 -98841684 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 3 994 202 409 39 16 chr5 53695651 53695780 -98841479 + MIR SINE MIR 22 153 -55 3 994 701 302 39 60 chr5 53696200 53696584 -98840675 + MTEb LTR MaLR 4 379 0 3 994 262 292 61 30 chr5 53696801 53696900 -98840359 + ORR1E LTR MaLR 76 177 -182 3 994 459 0 0 0 chr5 53697676 53697727 -98839532 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 3 994 658 252 15 8 chr5 53697727 53697859 -98839400 - ID_B1 SINE B4 -11 213 81 3 994 291 385 69 0 chr5 53698793 53698923 -98838336 + LTR16C LTR ERVL 304 442 -47 3 994 528 281 104 45 chr5 53699062 53699330 -98837929 - MLT1M LTR MaLR -252 420 137 3 994 41142 17 2 6 chr5 53699362 53705360 -98831899 + L1Md_T LINE L1 412 6382 -200 3 994 411 21 0 0 chr5 53705425 53705473 -98831786 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 994 269 213 82 31 chr5 53705509 53705606 -98831653 - L1ME4a LINE L1 -204 5920 5819 3 994 431 322 44 44 chr5 53707877 53708059 -98829200 - MIR SINE MIR -16 246 65 3 994 207 0 0 0 chr5 53708630 53708653 -98828606 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 3 994 405 58 0 0 chr5 53708655 53708707 -98828552 + (TTCCC)n Simple_repeat Simple_repeat 1 52 0 3 994 586 329 130 39 chr5 53709308 53709722 -98827537 - MLT1C LTR MaLR 0 467 16 3 994 269 324 71 91 chr5 53710369 53710566 -98826693 + MLT1A1 LTR MaLR 1 193 -215 3 994 227 222 19 0 chr5 53710569 53710623 -98826636 + L2a LINE L2 3345 3399 -27 3 994 236 247 45 154 chr5 53712003 53712113 -98825146 + MLT1A1 LTR MaLR 1 98 -310 3 994 207 69 0 0 chr5 53713620 53713649 -98823610 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 994 528 273 27 96 chr5 53713649 53713795 -98823464 - ID_B1 SINE B4 -10 214 79 3 994 213 121 0 0 chr5 53713809 53713842 -98823417 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 3 994 816 253 91 11 chr5 53714002 53714278 -98822981 - MLT1B LTR MaLR -21 369 72 3 994 231 298 52 41 chr5 53714348 53714494 -98822765 - MIR SINE MIR -97 171 30 3 994 280 227 34 25 chr5 53714576 53714662 -98822597 - MIRc SINE MIR -170 106 15 3 994 211 398 76 0 chr5 53715356 53715474 -98821785 - L2c LINE L2 -178 3209 3083 3 994 229 279 0 32 chr5 53716363 53716426 -98820833 + C-rich Low_complexity Low_complexity 2 62 0 3 994 468 0 0 0 chr5 53716564 53716616 -98820643 + (TC)n Simple_repeat Simple_repeat 2 53 0 3 994 330 26 0 0 chr5 53718394 53718433 -98818826 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 3 994 256 127 18 18 chr5 53718444 53718484 -98818775 + polypyrimidine Low_complexity Low_complexity 17 57 0 3 994 998 103 29 6 chr5 53718484 53718659 -98818600 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 4 994 256 127 18 18 chr5 53718659 53718674 -98818585 + polypyrimidine Low_complexity Low_complexity 2 16 0 4 994 309 214 301 0 chr5 53718688 53718791 -98818468 - B1_Mur2 SINE Alu -14 135 2 4 994 453 291 34 22 chr5 53718791 53718970 -98818289 - LTR33A LTR ERVL -35 485 305 4 994 830 105 8 0 chr5 53718976 53719100 -98818159 - URR1B DNA MER1_type -1 224 100 4 994 604 279 48 48 chr5 53719199 53719387 -98817872 - LTR33A LTR ERVL -317 203 16 4 994 216 0 0 0 chr5 53719450 53719474 -98817785 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 994 375 288 95 7 chr5 53719530 53719677 -98817582 + MIR SINE MIR 76 235 -27 4 994 318 123 316 17 chr5 53719740 53719854 -98817405 - B2_Mm2 SINE B2 -1 194 47 4 994 765 107 284 7 chr5 53719901 53720042 -98817217 - B2_Mm2 SINE B2 -14 181 2 4 994 632 230 73 7 chr5 53720060 53720196 -98817063 + MTC LTR MaLR 269 413 -8 4 994 513 0 0 0 chr5 53720320 53720377 -98816882 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 994 388 239 144 42 chr5 53720406 53720524 -98816735 - B4A SINE B4 -24 268 139 4 994 210 239 13 53 chr5 53720572 53720647 -98816612 - B3A SINE B2 -125 73 2 4 994 191 316 39 13 chr5 53721698 53721775 -98815484 - L2a LINE L2 0 3426 3348 4 994 990 271 92 60 chr5 53721823 53722236 -98815023 - MLT1C LTR MaLR -31 436 11 4 994 184 234 88 59 chr5 53722517 53722585 -98814674 - L2c LINE L2 -44 3382 3291 4 994 254 362 72 20 chr5 53722681 53722833 -98814426 + LTR16A LTR ERVL 34 193 -258 4 994 310 373 22 0 chr5 53724105 53724239 -98813020 + MLT1K LTR MaLR 455 591 -4 4 994 888 319 66 34 chr5 53725055 53725435 -98811824 + LTR48B LTR ERV1 243 634 -10 4 994 1118 274 84 10 chr5 53727333 53727375 -98809884 - MLT2D LTR ERVL -1 413 372 4 994 441 0 0 0 chr5 53727375 53727424 -98809835 + (GGGGA)n Simple_repeat Simple_repeat 2 50 0 4 994 1118 274 84 10 chr5 53727424 53727764 -98809495 - MLT2D LTR ERVL -43 371 3 4 994 221 341 69 29 chr5 53728068 53728243 -98809016 + L2 LINE L2 1846 2027 -1392 4 994 207 0 0 0 chr5 53728410 53728433 -98808826 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 994 378 0 0 0 chr5 53728433 53728474 -98808785 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 994 569 281 50 0 chr5 53728486 53728607 -98808652 - RSINE1 SINE B4 -36 129 3 4 994 925 280 96 33 chr5 53729086 53729418 -98807841 + ORR1E LTR MaLR 7 359 0 4 994 213 39 0 0 chr5 53730235 53730261 -98806998 + (TTCC)n Simple_repeat Simple_repeat 4 29 0 4 994 1430 65 38 0 chr5 53730282 53730466 -98806793 - B2_Mm2 SINE B2 -2 193 3 4 994 694 335 35 31 chr5 53730695 53730954 -98806305 + MLT1A LTR MaLR 109 368 -6 4 994 288 355 66 0 chr5 53731429 53731550 -98805709 - MER5B DNA MER1_type -6 172 44 4 994 230 299 89 45 chr5 53731766 53731878 -98805381 + MIRc SINE MIR 43 159 -109 4 994 2230 209 62 31 chr5 53732520 53732946 -98804313 + RLTR20A LTR ERVK 1 445 -96 4 994 426 88 0 0 chr5 53732946 53733014 -98804245 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 994 2230 209 62 31 chr5 53733014 53733105 -98804154 + RLTR20A LTR ERVK 446 533 -8 4 994 665 293 94 50 chr5 53733227 53733504 -98803755 + B4 SINE B4 4 292 0 4 994 276 30 0 0 chr5 53733531 53733564 -98803695 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 994 468 311 100 94 chr5 53733732 53734073 -98803186 - MLT1A0 LTR MaLR -22 343 1 4 994 316 324 20 72 chr5 53734734 53734887 -98802372 + MLT1C LTR MaLR 317 461 -6 4 994 652 102 269 17 chr5 53734990 53735109 -98802150 + B1_Mur4 SINE Alu 2 150 0 4 994 1377 98 0 30 chr5 53735222 53735422 -98801837 + B2_Mm2 SINE B2 2 195 0 4 994 1253 235 87 32 chr5 53735884 53736253 -98801006 - RMER13A LTR ERVK -395 465 77 4 994 254 203 61 30 chr5 53736468 53736534 -98800725 - B3 SINE B2 -135 81 14 4 994 270 81 0 0 chr5 53736963 53737000 -98800259 + (CCCCCA)n Simple_repeat Simple_repeat 2 38 0 4 994 648 312 106 7 chr5 53737241 53737525 -98799734 - MLT1K LTR MaLR -36 559 248 4 994 558 189 0 0 chr5 53737521 53737611 -98799648 - 5S rRNA rRNA -31 90 1 4 124 411 258 11 0 chr5 53739496 53739585 -98797674 - ORR1D2 LTR MaLR -278 92 3 4 995 649 263 115 19 chr5 53739587 53739796 -98797463 - ORR1E LTR MaLR -34 325 97 4 995 620 289 24 18 chr5 53739958 53740127 -98797132 - B3A SINE B2 -1 197 28 4 995 567 280 77 0 chr5 53740243 53740450 -98796809 - Arthur1B DNA Tip100 0 1225 1003 4 995 186 333 83 23 chr5 53740818 53740950 -98796309 - L2 LINE L2 -514 2905 2766 4 995 677 216 231 13 chr5 53741036 53741138 -98796121 - Lx8 LINE L1 -4 7469 7358 4 995 702 65 0 0 chr5 53741138 53741230 -98796029 + (TCC)n Simple_repeat Simple_repeat 3 94 0 4 995 677 216 231 13 chr5 53741230 53741352 -98795907 - Lx8 LINE L1 -116 7357 7197 4 995 187 135 57 19 chr5 53741515 53741568 -98795691 + GA-rich Low_complexity Low_complexity 2 56 0 4 995 207 351 91 19 chr5 53741865 53742019 -98795240 - L2c LINE L2 -200 3187 3023 4 995 1515 78 0 5 chr5 53742194 53742388 -98794871 + B2_Mm2 SINE B2 2 194 -1 4 995 1062 288 14 20 chr5 53743186 53743480 -98793779 - RMER15 LTR ERVL -11 564 273 4 995 323 248 32 114 chr5 53743455 53743578 -98793681 - RMER15 LTR ERVL -405 170 58 4 995 1082 66 0 0 chr5 53743598 53743735 -98793524 - B1_Mus1 SINE Alu 0 148 12 4 995 496 175 17 104 chr5 53743633 53743748 -98793511 - MT2B LTR ERVL -337 264 160 4 995 242 252 92 67 chr5 53743854 53743973 -98793286 + MLT1J LTR MaLR 387 508 -4 4 995 538 244 75 26 chr5 53744087 53744286 -98792973 + ID_B1 SINE B4 3 226 -66 4 995 184 253 229 10 chr5 53744493 53744589 -98792670 + MIRm SINE MIR 20 136 -140 4 995 237 65 0 0 chr5 53744647 53744678 -98792581 + (C)n Simple_repeat Simple_repeat 1 31 0 4 995 477 0 0 0 chr5 53744678 53744731 -98792528 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 995 252 270 16 0 chr5 53744878 53744941 -98792318 + Tigger7 DNA MER2_type 50 113 -2378 4 995 250 119 18 73 chr5 53744941 53745050 -98792209 + (TTTG)n Simple_repeat Simple_repeat 2 104 0 4 995 1109 55 0 0 chr5 53745067 53745195 -98792064 - B1_Mm SINE Alu -19 128 1 4 995 449 326 128 50 chr5 53745199 53745480 -98791779 + Tigger7 DNA MER2_type 104 406 -2085 4 995 445 176 92 0 chr5 53745482 53745601 -98791658 + Tigger7 DNA MER2_type 2247 2376 -115 4 995 760 225 120 5 chr5 53745607 53745799 -98791460 - ID_B1 SINE B4 -7 217 4 4 995 265 236 121 61 chr5 53746249 53746348 -98790911 - PB1D10 SINE Alu -12 105 1 4 995 939 146 0 0 chr5 53746901 53747059 -98790200 + (GGAGAA)n Simple_repeat Simple_repeat 6 163 0 4 995 454 321 118 23 chr5 53747092 53747312 -98789947 + RMER5 LTR ERV1 41 281 -253 4 995 360 300 29 44 chr5 53747326 53747462 -98789797 + RMER5 LTR ERV1 381 514 -20 4 995 403 348 25 19 chr5 53747479 53747640 -98789619 + Tigger7 DNA MER2_type 245 406 -2085 4 995 488 182 74 0 chr5 53747642 53747763 -98789496 + Tigger7 DNA MER2_type 2247 2376 -115 4 995 637 81 41 0 chr5 53747787 53747910 -98789349 + (TG)n Simple_repeat Simple_repeat 2 129 0 4 995 608 260 26 32 chr5 53748776 53748931 -98788328 + RSINE1 SINE B4 2 155 -10 4 995 231 289 13 38 chr5 53749642 53749721 -98787538 + C-rich Low_complexity Low_complexity 5 81 0 4 995 311 118 61 27 chr5 53750125 53750273 -98786986 + (TG)n Simple_repeat Simple_repeat 2 154 0 4 995 402 121 52 35 chr5 53750294 53750466 -98786793 + (TG)n Simple_repeat Simple_repeat 1 175 0 4 995 741 116 37 0 chr5 53750492 53750656 -98786603 + (TG)n Simple_repeat Simple_repeat 2 171 0 4 995 701 239 11 97 chr5 53752200 53752385 -98784874 + B3 SINE B2 48 216 0 4 995 485 308 78 66 chr5 53752450 53752784 -98784475 - MLT1H2 LTR MaLR -151 338 1 4 995 362 346 115 7 chr5 53753287 53753497 -98783762 - LTR33A_ LTR ERVL -269 262 15 4 995 477 0 0 0 chr5 53753560 53753613 -98783646 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 995 248 315 0 0 chr5 53754154 53754227 -98783032 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 995 280 318 204 18 chr5 53754625 53754846 -98782413 + ORR1D2 LTR MaLR 88 349 -21 4 995 405 162 112 9 chr5 53755638 53755738 -98781521 - MTD LTR MaLR -9 410 295 4 995 421 248 94 0 chr5 53755745 53755862 -98781397 + L2a LINE L2 1948 2075 -1344 4 995 378 0 0 0 chr5 53755877 53755919 -98781340 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 995 634 304 31 22 chr5 53755947 53756176 -98781083 - B4A SINE B4 -10 282 52 4 995 476 288 194 31 chr5 53756187 53756600 -98780659 + L2a LINE L2 2062 2541 -878 4 995 912 254 64 39 chr5 53756600 53756833 -98780426 + B4 SINE B4 54 292 0 4 995 221 229 0 0 chr5 53756852 53756900 -98780359 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 995 479 346 112 23 chr5 53757169 53757562 -98779697 + L2a LINE L2 2965 3392 -34 4 995 187 329 0 89 chr5 53757714 53757804 -98779455 + L2c LINE L2 3286 3367 -20 4 995 419 328 64 58 chr5 53757823 53758011 -98779248 + B3A SINE B2 1 189 -9 4 995 3720 112 97 2 chr5 53758686 53759232 -98778027 - MT2B LTR ERVL -3 598 1 4 995 472 296 71 58 chr5 53759539 53759693 -98777566 - RSINE1 SINE B4 0 165 10 4 995 1814 117 8 0 chr5 53759698 53759955 -98777304 + MTC LTR MaLR 1 259 -162 4 995 252 242 15 15 chr5 53760029 53760096 -98777163 + GA-rich Low_complexity Low_complexity 1 67 0 4 995 922 169 74 12 chr5 53760244 53760406 -98776853 + MTC LTR MaLR 250 421 0 4 995 180 0 0 0 chr5 53760422 53760442 -98776817 + (T)n Simple_repeat Simple_repeat 1 20 0 4 995 1230 48 0 7 chr5 53760442 53760589 -98776670 - B1_Mm SINE Alu 0 147 2 4 995 1840 144 81 3 chr5 53760867 53761200 -98776059 + RLTR15 LTR ERVK 1 359 0 4 995 186 171 0 0 chr5 53761346 53761387 -98775872 + T-rich Low_complexity Low_complexity 1 41 0 4 995 1208 68 0 0 chr5 53761390 53761536 -98775723 - B1_Mus1 SINE Alu 0 148 3 4 995 804 193 65 57 chr5 53761968 53762272 -98774987 + RMER10A LTR ERVL 1 344 -98 4 995 2171 136 21 3 chr5 53762272 53762612 -98774647 + ORR1A1 LTR MaLR 1 346 0 4 995 804 185 106 91 chr5 53762612 53762705 -98774554 + RMER10A LTR ERVL 345 441 -1 4 995 438 108 0 0 chr5 53762707 53762772 -98774487 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 995 297 0 0 0 chr5 53763316 53763349 -98773910 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 995 342 0 0 0 chr5 53763352 53763390 -98773869 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 5 995 1273 208 65 10 chr5 53763585 53763877 -98773382 - Lx8 LINE L1 -88 7385 7078 5 995 1032 219 40 0 chr5 53763920 53764121 -98773138 - B3 SINE B2 -7 209 1 5 995 779 201 0 6 chr5 53764221 53764401 -98772858 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 995 204 122 0 0 chr5 53765244 53765285 -98771974 + (T)n Simple_repeat Simple_repeat 1 41 0 5 995 234 0 0 0 chr5 53765539 53765565 -98771694 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 995 365 342 71 53 chr5 53766542 53766712 -98770547 + B4A SINE B4 118 290 -2 5 995 250 324 197 0 chr5 53766908 53767050 -98770209 - L2 LINE L2 -376 3043 2874 5 995 797 268 75 20 chr5 53767050 53767343 -98769916 - L2 LINE L2 -959 2460 2152 5 995 507 33 0 0 chr5 53767634 53767695 -98769564 + (TTTTC)n Simple_repeat Simple_repeat 1 61 0 5 995 1406 58 40 0 chr5 53767695 53767868 -98769391 - B2_Mm2 SINE B2 -14 181 2 5 995 262 0 53 0 chr5 53769355 53769393 -98767866 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 5 995 663 243 22 0 chr5 53769406 53769542 -98767717 + ID_B1 SINE B4 81 219 -5 5 995 208 300 96 43 chr5 53770186 53770280 -98766979 - MIR3 SINE MIR -84 192 88 5 995 211 335 43 123 chr5 53771251 53771438 -98765821 - MIRb SINE MIR -6 262 91 5 995 21 0 0 0 chr5 53771463 53771484 -98765775 + AT_rich Low_complexity Low_complexity 1 21 0 5 995 697 246 164 57 chr5 53771803 53772066 -98765193 + B4A SINE B4 2 292 0 5 995 249 328 8 49 chr5 53773223 53773345 -98763914 + MLT2F LTR ERVL 5 121 -542 5 995 2235 101 13 0 chr5 53774081 53774398 -98762861 + ORR1A4 LTR MaLR 7 327 -2 5 995 229 345 0 35 chr5 53774412 53774499 -98762760 - MLT1J LTR MaLR -260 252 169 5 995 698 289 17 6 chr5 53774578 53774759 -98762500 - B3A SINE B2 -15 183 1 5 995 397 254 16 41 chr5 53774859 53774982 -98762277 - RSINE1 SINE B4 -45 120 1 5 995 610 153 143 0 chr5 53775021 53775119 -98762140 + B1_Mur2 SINE Alu 24 135 -14 5 995 301 131 33 0 chr5 53775121 53775182 -98762077 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 995 21 0 0 0 chr5 53775253 53775274 -98761985 + AT_rich Low_complexity Low_complexity 1 21 0 5 995 880 227 0 35 chr5 53775297 53775466 -98761793 - RSINE1 SINE B4 0 165 3 5 995 308 306 39 55 chr5 53775968 53776096 -98761163 + MLT1A LTR MaLR 2 127 -247 5 995 273 246 33 0 chr5 53776182 53776243 -98761016 + MTD LTR MaLR 35 97 -324 5 995 414 185 0 0 chr5 53776243 53776324 -98760935 + (CGTG)n Simple_repeat Simple_repeat 2 82 0 5 995 1136 235 119 14 chr5 53776324 53776609 -98760650 + MTD LTR MaLR 105 419 0 5 995 228 273 31 102 chr5 53777294 53777392 -98759867 - RLTR25B LTR ERVK -496 532 442 5 995 466 237 41 0 chr5 53777308 53777405 -98759854 - B1F2 SINE Alu -21 128 28 5 995 379 259 96 26 chr5 53777315 53777430 -98759829 - ID_B1 SINE B4 -25 199 77 5 995 633 265 214 72 chr5 53777580 53777598 -98759661 + MTD LTR MaLR 13 23 -384 5 995 234 0 0 0 chr5 53777598 53777624 -98759635 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 995 693 252 116 42 chr5 53777624 53777951 -98759308 + MTD LTR MaLR 24 419 0 5 995 561 247 0 0 chr5 53778122 53778272 -98758987 + CT-rich Low_complexity Low_complexity 3 152 0 5 995 295 310 29 29 chr5 53778283 53778386 -98758873 - ID_B1 SINE B4 -38 186 84 5 995 911 252 67 4 chr5 53778628 53778883 -98758376 - B4 SINE B4 -14 278 8 5 995 239 239 0 0 chr5 53778897 53778943 -98758316 - PB1D10 SINE Alu -8 109 64 5 995 273 57 0 0 chr5 53779159 53779194 -98758065 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 5 995 258 289 12 12 chr5 53779438 53779522 -98757737 - MIR SINE MIR -79 183 100 5 995 403 308 119 30 chr5 53779751 53779952 -98757307 - MLT1A0 LTR MaLR 0 365 147 5 995 229 239 52 52 chr5 53780155 53780252 -98757007 - BC1_Mm scRNA scRNA -37 115 19 5 995 343 199 34 35 chr5 53780172 53780266 -98756993 - B4A SINE B4 -69 96 3 5 995 483 202 16 16 chr5 53780274 53780400 -98756859 - MLT1A0 LTR MaLR -210 155 30 5 995 522 161 0 21 chr5 53780414 53780509 -98756750 - B1_Mur4 SINE Alu 0 150 58 5 995 1245 27 0 0 chr5 53781843 53781992 -98755267 + (TTCCC)n Simple_repeat Simple_repeat 3 151 0 5 995 1221 106 0 0 chr5 53781992 53782172 -98755087 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 995 225 178 0 0 chr5 53782173 53782218 -98755041 + CT-rich Low_complexity Low_complexity 4 48 0 5 995 563 235 96 163 chr5 53782228 53782371 -98754888 - ID_B1 SINE B4 0 224 84 5 995 929 130 0 52 chr5 53782371 53782525 -98754734 + B1_Mus2 SINE Alu 1 146 -1 5 995 563 235 96 163 chr5 53782525 53782620 -98754639 - ID SINE ID -141 83 2 5 995 1204 248 19 105 chr5 53782831 53783241 -98754018 - MTE2a LTR MaLR 0 379 5 5 995 4011 107 17 14 chr5 53784252 53784833 -98752426 - Lx4A LINE L1 0 7058 6476 5 995 675 286 128 4 chr5 53785052 53785287 -98751972 + MTE2a LTR MaLR 1 264 -115 5 995 229 163 0 20 chr5 53786310 53786360 -98750899 - MTEb LTR MaLR -5 374 326 5 995 534 118 0 0 chr5 53786382 53786484 -98750775 + (TC)n Simple_repeat Simple_repeat 2 103 0 5 995 317 24 24 0 chr5 53786485 53786527 -98750732 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 995 204 159 23 0 chr5 53786599 53786643 -98750616 + A-rich Low_complexity Low_complexity 6 50 0 5 995 264 59 0 0 chr5 53786814 53786848 -98750411 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 995 490 298 50 0 chr5 53786990 53787111 -98750148 + RSINE1 SINE B4 1 127 -38 5 995 369 0 0 0 chr5 53787123 53787164 -98750095 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 995 701 293 24 5 chr5 53787904 53788113 -98749146 - ID_B1 SINE B4 -10 214 2 5 995 217 315 52 30 chr5 53788601 53788735 -98748524 + MIR SINE MIR 84 220 -42 5 995 234 91 0 0 chr5 53788755 53788788 -98748471 + (CAT)n Simple_repeat Simple_repeat 1 33 0 5 995 317 270 45 0 chr5 53788796 53788907 -98748352 - PB1D7 SINE Alu -1 119 4 5 995 1312 240 48 7 chr5 53788958 53789248 -98748011 - MTD LTR MaLR -1 418 117 5 995 228 298 53 11 chr5 53789854 53789949 -98747310 + L2 LINE L2 2685 2783 -636 5 995 283 289 0 10 chr5 53790906 53791004 -98746255 - Lx7 LINE L1 -21 7675 7579 5 995 733 308 0 0 chr5 53791041 53791223 -98746036 - B3A SINE B2 -16 182 1 5 995 243 325 191 30 chr5 53791227 53791598 -98745661 + L1MC4 LINE L1 7447 7877 -165 5 995 280 284 14 0 chr5 53794506 53794580 -98742679 + B4 SINE B4 10 84 -208 5 995 189 0 0 0 chr5 53794595 53794616 -98742643 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 995 523 332 116 56 chr5 53795282 53795515 -98741744 - B4 SINE B4 -32 260 14 5 995 273 261 141 0 chr5 53796120 53796212 -98741047 + MER58A DNA MER1_type 27 131 -93 5 995 1172 97 11 0 chr5 53796961 53797137 -98740122 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 5 995 288 0 0 0 chr5 53797137 53797169 -98740090 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 5 995 238 298 86 55 chr5 53797405 53797533 -98739726 + MIR3 SINE MIR 25 156 -52 5 995 703 240 104 0 chr5 53797906 53798089 -98739170 + B3 SINE B2 1 202 -14 5 995 645 14 0 0 chr5 53798089 53798163 -98739096 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 5 995 216 0 0 0 chr5 53798267 53798291 -98738968 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 5 995 3322 141 82 2 chr5 53798291 53798826 -98738433 + Lx LINE L1 6069 6646 -8 5 995 400 134 34 40 chr5 53798877 53798973 -98738286 + B1F1 SINE Alu 16 149 0 5 995 267 31 0 0 chr5 53800216 53800248 -98737011 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 995 246 229 0 0 chr5 53800351 53800412 -98736847 - MLT1C LTR MaLR 0 505 445 5 995 306 311 115 62 chr5 53800451 53800711 -98736548 - MLT1C LTR MaLR -128 339 66 5 995 641 244 0 0 chr5 53800796 53800927 -98736332 - RSINE1 SINE B4 -20 145 15 5 995 541 321 136 21 chr5 53801241 53801436 -98735823 + B4A SINE B4 1 210 -82 5 995 513 0 0 0 chr5 53801436 53801493 -98735766 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 5 995 541 321 136 21 chr5 53801493 53801539 -98735720 + B4A SINE B4 211 269 -23 5 995 478 137 21 0 chr5 53801550 53801645 -98735614 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 5 995 261 135 0 0 chr5 53801667 53801719 -98735540 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 995 392 246 33 58 chr5 53801750 53801871 -98735388 + MLT1A1 LTR MaLR 291 408 0 5 995 525 272 159 37 chr5 53802288 53802686 -98734573 + MLT1C LTR MaLR 31 502 -3 5 995 432 51 0 0 chr5 53803042 53803101 -98734158 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 5 995 329 250 26 13 chr5 53805576 53805653 -98731606 + B4A SINE B4 5 82 -210 5 995 435 268 0 0 chr5 53805655 53805823 -98731436 + (CA)n Simple_repeat Simple_repeat 1 168 0 5 995 281 265 160 20 chr5 53805941 53806041 -98731218 - MLT1A LTR MaLR 0 374 261 5 995 3161 69 7 0 chr5 53806174 53806581 -98730678 - L1Md_F2 LINE L1 0 6582 6173 5 995 285 324 79 45 chr5 53807039 53807217 -98730042 + MLT1G3 LTR MaLR 106 289 -306 5 995 309 331 109 76 chr5 53807328 53807603 -98729656 + MLT1A1 LTR MaLR 26 309 -99 5 995 336 264 63 47 chr5 53807621 53807812 -98729447 + Tigger6b DNA MER2_type 1325 1518 -79 5 995 36 23 0 0 chr5 53808097 53808140 -98729119 + AT_rich Low_complexity Low_complexity 1 43 0 5 995 253 268 80 4 chr5 53808553 53808655 -98728604 - RSINE1 SINE B4 -16 276 78 5 995 438 239 17 26 chr5 53808711 53808827 -98728432 - B4A SINE B4 -176 116 2 5 995 303 127 32 0 chr5 53809078 53809141 -98728118 - MER57C2 LTR ERV1 -5 429 365 5 995 508 232 78 0 chr5 53809252 53809394 -98727865 - MER2 DNA MER2_type -102 243 91 6 995 1244 249 35 0 chr5 53809471 53809760 -98727499 - MER57C2 LTR ERV1 -135 299 1 5 995 439 233 0 0 chr5 53809809 53809899 -98727360 + 5S rRNA rRNA 1 90 -31 6 995 273 264 78 55 chr5 53809818 53809946 -98727313 + AmnSINE1 SINE SINE 10 140 -435 6 995 248 291 109 151 chr5 53809950 53810234 -98727025 + MLT1H2-int LTR MaLR 318 589 -820 6 995 934 209 22 17 chr5 53810353 53810533 -98726726 - B3A SINE B2 -16 182 2 6 995 369 236 114 0 chr5 53810627 53810750 -98726509 - RMER15 LTR ERVL -37 538 402 6 995 423 271 85 0 chr5 53810750 53810868 -98726391 - ID_B1 SINE B4 -73 151 24 6 995 555 287 72 122 chr5 53810973 53811161 -98726098 + MLT1H2-int LTR MaLR 715 878 -531 6 995 646 221 44 0 chr5 53811161 53811297 -98725962 - B1F2 SINE Alu -7 142 1 6 995 555 287 72 122 chr5 53811297 53811485 -98725774 + MLT1H2-int LTR MaLR 879 1072 -337 6 995 285 316 86 41 chr5 53811999 53812257 -98725002 + MLT1H2 LTR MaLR 306 579 0 6 995 664 204 76 21 chr5 53813634 53813779 -98723480 - RSINE1 SINE B4 0 165 13 6 995 4541 68 19 8 chr5 53814576 53815171 -98722088 - L1Md_F2 LINE L1 -1 6581 5981 6 995 4108 29 0 0 chr5 53815171 53815792 -98721467 + L1Md_F2 LINE L1 5406 6026 -556 6 995 459 0 0 0 chr5 53815895 53815946 -98721313 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 995 796 129 30 8 chr5 53816485 53816618 -98720641 + B1_Mus1 SINE Alu 6 141 -7 6 995 227 79 0 26 chr5 53816618 53816657 -98720602 + (CCA)n Simple_repeat Simple_repeat 3 40 0 6 995 298 274 372 10 chr5 53816681 53816883 -98720376 - L1MA6 LINE L1 -5 6295 6021 6 995 571 281 109 59 chr5 53818853 53819193 -98718066 + MLT1J LTR MaLR 3 359 -153 6 995 1188 56 0 0 chr5 53819209 53819351 -98717908 - B1_Mus2 SINE Alu -5 142 1 6 995 582 332 79 47 chr5 53819442 53819783 -98717476 - ORR1E LTR MaLR -5 354 3 6 995 362 235 15 0 chr5 53820101 53820169 -98717090 + ID4 SINE ID 2 70 -13 6 995 1046 216 34 5 chr5 53822125 53822334 -98714925 - B3 SINE B2 0 216 2 6 995 493 182 0 20 chr5 53822345 53822446 -98714813 - PB1D9 SINE Alu 0 120 22 6 995 375 23 0 0 chr5 53822656 53822700 -98714559 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 995 654 13 0 0 chr5 53822701 53822776 -98714483 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 995 241 297 44 26 chr5 53824489 53824603 -98712656 + MTEb LTR MaLR 19 134 -225 6 995 321 262 4 11 chr5 53824739 53824841 -98712418 + MTEb LTR MaLR 278 379 0 6 995 279 0 0 0 chr5 53825126 53825157 -98712102 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 995 1140 75 7 0 chr5 53825169 53825315 -98711944 - B1_Mus2 SINE Alu 0 147 1 6 995 1170 68 0 0 chr5 53825496 53825642 -98711617 + B1_Mus2 SINE Alu 2 147 0 6 995 1139 115 9 0 chr5 53825644 53825868 -98711391 + (GAAA)n Simple_repeat Simple_repeat 1 226 0 6 995 883 260 0 20 chr5 53826084 53826280 -98710979 + B3 SINE B2 15 206 -10 6 995 22 0 0 0 chr5 53826295 53826317 -98710942 + AT_rich Low_complexity Low_complexity 1 22 0 6 995 459 305 17 0 chr5 53827201 53827319 -98709940 + RSINE1 SINE B4 3 122 -43 6 995 186 306 35 23 chr5 53827853 53827940 -98709319 - L2a LINE L2 -17 3409 3322 6 995 478 223 104 37 chr5 53827945 53828080 -98709179 + B1F SINE Alu 6 149 0 6 995 760 247 6 6 chr5 53830062 53830221 -98707038 + RSINE1 SINE B4 2 160 -5 6 995 210 37 0 0 chr5 53830815 53830842 -98706417 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 995 381 269 120 0 chr5 53831300 53831408 -98705851 - B1F2 SINE Alu -12 137 17 6 995 261 217 81 46 chr5 53831332 53831419 -98705840 - MT2B2 LTR ERVL -326 258 169 6 995 1113 84 0 0 chr5 53831809 53831963 -98705296 + (TC)n Simple_repeat Simple_repeat 1 154 0 6 995 198 0 0 0 chr5 53831964 53831986 -98705273 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 995 306 0 0 0 chr5 53832052 53832086 -98705173 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 995 1174 43 0 0 chr5 53832086 53832224 -98705035 - B1_Mus2 SINE Alu -9 138 1 6 995 294 297 3 91 chr5 53832305 53832510 -98704749 - MLT1J LTR MaLR -236 276 55 6 995 261 0 0 0 chr5 53833140 53833169 -98704090 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 6 995 1018 64 234 6 chr5 53833405 53833563 -98703696 + B2_Mm2 SINE B2 1 194 -1 6 995 302 0 26 0 chr5 53833912 53833950 -98703309 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 995 1101 68 0 39 chr5 53833950 53834093 -98703166 - B1_Mus1 SINE Alu -10 138 2 6 995 399 325 101 39 chr5 53834245 53834424 -98702835 - LTR16A LTR ERVL -257 194 5 6 995 1146 55 7 7 chr5 53834522 53834668 -98702591 + B1_Mm SINE Alu 1 146 -1 6 995 494 306 14 69 chr5 53836105 53836249 -98701010 - MTEa LTR MaLR -233 146 11 6 995 549 328 102 34 chr5 53836313 53836592 -98700667 + MLT1D LTR MaLR 3 293 -212 6 995 716 267 109 15 chr5 53836592 53836858 -98700401 - B4A SINE B4 0 292 2 6 995 549 328 102 34 chr5 53836858 53837048 -98700211 + MLT1D LTR MaLR 294 504 -1 6 995 226 318 69 59 chr5 53838321 53838525 -98698734 - MIRb SINE MIR -56 212 7 6 995 188 356 114 9 chr5 53840322 53840427 -98696832 - MIRm SINE MIR -129 147 32 6 995 471 63 0 0 chr5 53840430 53840493 -98696766 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 995 296 211 114 38 chr5 53840666 53840745 -98696514 + ID SINE ID 2 86 -138 6 995 201 268 133 42 chr5 53840903 53841046 -98696213 + MIR SINE MIR 6 162 -46 6 995 373 330 115 63 chr5 53841246 53841595 -98695664 - MLT1K LTR MaLR -16 579 213 6 995 219 36 0 0 chr5 53841840 53841868 -98695391 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 995 645 49 0 0 chr5 53841868 53841949 -98695310 + (GA)n Simple_repeat Simple_repeat 1 81 0 6 995 232 271 34 45 chr5 53842689 53842778 -98694481 + LTR81A LTR ERV1? 1040 1127 -223 6 995 251 208 25 38 chr5 53842806 53842886 -98694373 + L1M4 LINE L1 5157 5235 -911 6 995 739 175 42 72 chr5 53843337 53843503 -98693756 + RSINE1 SINE B4 3 163 -2 6 995 180 0 0 0 chr5 53843597 53843617 -98693642 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6 995 291 167 100 0 chr5 53843825 53843885 -98693374 + Lx9 LINE L1 7574 7639 -5 6 995 23 0 0 0 chr5 53843885 53843908 -98693351 + AT_rich Low_complexity Low_complexity 1 23 0 6 995 208 176 0 0 chr5 53843914 53843948 -98693311 - L2 LINE L2 -688 2731 2698 6 995 476 77 13 0 chr5 53844105 53844183 -98693076 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 995 819 135 0 0 chr5 53844614 53844747 -98692512 + (TC)n Simple_repeat Simple_repeat 2 134 0 6 995 1155 71 0 0 chr5 53844756 53844897 -98692362 - B1_Mus1 SINE Alu -6 142 2 6 995 348 256 61 76 chr5 53845218 53845349 -98691910 - B4A SINE B4 -32 260 132 6 995 287 324 17 51 chr5 53846554 53846671 -98690588 - MIRb SINE MIR -63 205 93 6 995 227 271 68 0 chr5 53847170 53847229 -98690030 + MLT1J1 LTR MaLR 97 159 -285 6 995 524 311 108 60 chr5 53847554 53847906 -98689353 - MLT1A LTR MaLR -5 369 1 6 995 443 330 22 102 chr5 53848280 53848506 -98688753 + B4A SINE B4 85 292 0 6 995 198 167 0 0 chr5 53848511 53848547 -98688712 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 995 1223 48 0 0 chr5 53849058 53849203 -98688056 + B1_Mus1 SINE Alu 4 148 0 6 995 252 77 0 0 chr5 53849205 53849244 -98688015 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 995 257 275 14 0 chr5 53849487 53849556 -98687703 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 995 332 294 42 153 chr5 53849571 53849702 -98687557 - B4 SINE B4 -105 187 71 6 995 929 168 0 7 chr5 53849702 53849852 -98687407 - B1_Mur2 SINE Alu 0 149 1 6 995 332 294 42 153 chr5 53849852 53849909 -98687350 - B4 SINE B4 -222 70 20 6 995 249 269 73 49 chr5 53850538 53850620 -98686639 + PB1D10 SINE Alu 2 85 -42 6 995 183 80 0 0 chr5 53850626 53850651 -98686608 + (A)n Simple_repeat Simple_repeat 1 25 0 6 995 1206 41 0 7 chr5 53850652 53850789 -98686470 + B1_Mus1 SINE Alu 1 137 -11 6 995 351 0 0 0 chr5 53850789 53850828 -98686431 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 995 1062 77 21 0 chr5 53850897 53851040 -98686219 + B1_Mus2 SINE Alu 2 147 0 6 995 386 235 23 0 chr5 53851064 53851165 -98686094 + B3 SINE B2 27 133 -60 6 995 1281 136 14 14 chr5 53851203 53851412 -98685847 - URR1A DNA MER1_type -17 209 1 6 995 423 0 0 0 chr5 53851808 53851855 -98685404 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 995 243 355 12 25 chr5 53851917 53851998 -98685261 - RSINE1 SINE B4 -84 81 2 6 995 457 234 35 35 chr5 53852394 53852527 -98684732 - MLT1H LTR MaLR -32 528 388 6 995 218 281 30 30 chr5 53852585 53852651 -98684608 - MIRc SINE MIR -115 153 88 6 995 696 112 32 0 chr5 53852699 53852824 -98684435 + (TTCC)n Simple_repeat Simple_repeat 4 132 0 6 995 260 88 0 0 chr5 53852824 53852858 -98684401 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 995 252 86 0 0 chr5 53853047 53853082 -98684177 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 995 290 347 86 86 chr5 53853430 53853780 -98683479 + ORR1E LTR MaLR 1 350 -9 6 995 1286 27 0 0 chr5 53853981 53854128 -98683131 + B1_Mus1 SINE Alu 1 147 -1 6 995 338 251 210 9 chr5 53854363 53854579 -98682680 + MLT1H LTR MaLR 254 539 -10 6 995 272 167 56 0 chr5 53855499 53855553 -98681706 + Zaphod2 DNA Tip100 152 208 -3316 6 995 291 315 0 0 chr5 53855942 53856015 -98681244 - MER81 DNA AcHobo -38 76 4 6 995 498 312 26 0 chr5 53856232 53856386 -98680873 - MIR SINE MIR -20 242 85 6 995 1110 81 0 33 chr5 53856959 53857112 -98680147 + B1_Mus1 SINE Alu 1 148 0 6 995 268 246 16 0 chr5 53857545 53857606 -98679653 - ID4_ SINE ID -6 77 16 7 995 351 0 0 0 chr5 53857625 53857664 -98679595 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 7 995 25 0 0 0 chr5 53858067 53858092 -98679167 + AT_rich Low_complexity Low_complexity 1 25 0 7 995 548 171 197 31 chr5 53858652 53858779 -98678480 + B1_Mur4 SINE Alu 1 148 0 7 995 485 255 55 34 chr5 53858960 53859106 -98678153 + B1_Mur1 SINE Alu 1 149 0 7 995 210 71 0 0 chr5 53859143 53859171 -98678088 + (CCCG)n Simple_repeat Simple_repeat 3 30 0 7 995 203 243 0 0 chr5 53859863 53859900 -98677359 + polypurine Low_complexity Low_complexity 2 38 0 7 995 333 273 181 0 chr5 53860343 53860469 -98676790 - MIRb SINE MIR -107 161 8 7 995 209 186 0 0 chr5 53861832 53861875 -98675384 + G-rich Low_complexity Low_complexity 1 43 0 7 995 216 0 0 0 chr5 53862038 53862062 -98675197 + (A)n Simple_repeat Simple_repeat 1 24 0 7 995 1279 70 41 6 chr5 53862992 53863164 -98674095 - B2_Mm2 SINE B2 -16 179 2 7 995 1293 159 22 14 chr5 53863451 53863674 -98673585 - URR1B DNA MER1_type 0 225 1 7 995 273 265 14 81 chr5 53864493 53864641 -98672618 - HAL1b LINE L1 0 2009 1872 7 995 269 339 122 63 chr5 53865843 53866145 -98671114 + ORR1E LTR MaLR 2 321 -38 7 995 1221 68 0 0 chr5 53866689 53866836 -98670423 + B1_Mus2 SINE Alu 1 147 0 7 995 240 111 0 0 chr5 53866840 53866876 -98670383 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 7 995 381 278 0 11 chr5 53866914 53867005 -98670254 + B1F SINE Alu 1 90 -59 7 995 305 283 40 102 chr5 53867137 53867227 -98670032 - MIRb SINE MIR -56 212 121 7 995 1117 71 0 0 chr5 53867227 53867367 -98669892 + B1_Mus1 SINE Alu 1 140 -8 7 995 317 22 44 0 chr5 53867367 53867412 -98669847 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 995 325 278 16 15 chr5 53867412 53867509 -98669750 - MIRm SINE MIR -148 120 31 7 995 593 216 17 0 chr5 53867711 53867827 -98669432 + ID_B1 SINE B4 2 119 -105 7 995 2706 139 51 27 chr5 53868377 53868851 -98668408 + Lx4B LINE L1 6573 7057 -1 7 995 522 0 0 0 chr5 53868886 53868944 -98668315 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 995 27 0 0 0 chr5 53869341 53869368 -98667891 + AT_rich Low_complexity Low_complexity 1 27 0 7 995 236 321 12 0 chr5 53869401 53869482 -98667777 - ID4 SINE ID 0 83 2 7 995 186 43 0 0 chr5 53869745 53869768 -98667491 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 7 995 290 156 12 94 chr5 53869833 53869918 -98667341 - ID2 SINE ID -4 79 2 7 124 325 299 128 13 chr5 53870561 53870717 -98666542 - MER31B LTR ERV1 -292 174 1 7 996 348 264 71 11 chr5 53871560 53871700 -98665559 + MIR SINE MIR 63 226 -42 7 996 270 0 0 0 chr5 53872194 53872224 -98665035 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 996 604 224 98 39 chr5 53872433 53872586 -98664673 + RSINE1 SINE B4 2 163 -2 7 996 24 0 0 0 chr5 53872603 53872627 -98664632 + AT_rich Low_complexity Low_complexity 1 24 0 7 996 246 294 206 39 chr5 53873381 53873692 -98663567 - Charlie2a DNA MER1_type -1065 1796 1434 7 996 282 309 101 99 chr5 53873788 53874133 -98663126 - Charlie2a DNA MER1_type -1553 1308 963 7 996 270 0 0 0 chr5 53874258 53874288 -98662971 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 996 268 244 171 32 chr5 53874595 53874718 -98662541 - MLT1A1 LTR MaLR -252 156 17 7 996 797 116 8 4 chr5 53874994 53875126 -98662133 - B1_Mus2 SINE Alu 0 149 14 7 996 264 349 47 0 chr5 53875115 53875221 -98662038 - Charlie2a DNA MER1_type -2498 363 253 7 996 215 31 31 0 chr5 53875412 53875444 -98661815 + (TTG)n Simple_repeat Simple_repeat 2 34 0 7 996 520 318 115 35 chr5 53875754 53876041 -98661218 - MER68 LTR ERVL -2 561 252 7 996 929 35 0 0 chr5 53876037 53876153 -98661106 + B1_Mm SINE Alu 32 147 0 7 996 241 271 219 8 chr5 53876373 53876492 -98660767 + MER57C2 LTR ERV1 15 158 -276 7 996 231 222 18 36 chr5 53876686 53876742 -98660517 - MER68 LTR ERVL -491 72 18 7 996 185 250 14 86 chr5 53876964 53877034 -98660225 - MIR SINE MIR -1 261 197 7 996 205 338 0 14 chr5 53877088 53877157 -98660102 - MIRb SINE MIR -81 187 120 7 996 1472 253 63 29 chr5 53877285 53877773 -98659486 + MLT1D LTR MaLR 1 505 0 7 996 513 99 0 0 chr5 53878062 53878143 -98659116 + (TG)n Simple_repeat Simple_repeat 2 82 0 7 996 191 365 40 30 chr5 53879098 53879197 -98658062 - MIRb SINE MIR -94 174 75 7 996 1182 48 14 0 chr5 53879645 53879790 -98657469 + B1_Mm SINE Alu 1 147 0 7 996 216 0 0 0 chr5 53879790 53879814 -98657445 + (A)n Simple_repeat Simple_repeat 1 24 0 7 996 282 245 37 56 chr5 53879814 53879922 -98657337 + BC1_Mm scRNA scRNA 9 114 -38 7 996 303 309 69 41 chr5 53880020 53880165 -98657094 + L1MEc LINE L1 1270 1418 -4982 7 996 777 303 78 54 chr5 53880282 53880767 -98656492 + L1MB8 LINE L1 5648 6144 -34 7 996 662 91 10 0 chr5 53880823 53880922 -98656337 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 7 996 527 144 10 0 chr5 53882406 53882503 -98654756 + CT-rich Low_complexity Low_complexity 1 98 0 7 996 287 312 141 18 chr5 53882685 53882848 -98654411 - MIR SINE MIR -65 197 15 7 996 23 0 0 0 chr5 53882866 53882889 -98654370 + AT_rich Low_complexity Low_complexity 1 23 0 7 996 516 243 6 101 chr5 53883020 53883126 -98654133 - L1MB3 LINE L1 -16 6167 6073 7 996 523 197 124 36 chr5 53883126 53883263 -98653996 - B1_Mur3 SINE Alu 0 149 1 7 996 516 243 6 101 chr5 53883263 53883325 -98653934 - L1MB3 LINE L1 -111 6072 6015 7 996 230 233 0 0 chr5 53883490 53883533 -98653726 - MTEa LTR MaLR 0 379 337 7 996 558 295 19 0 chr5 53884039 53884195 -98653064 - RSINE1 SINE B4 -4 161 3 7 996 294 29 0 0 chr5 53884870 53884905 -98652354 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 7 996 792 212 14 0 chr5 53886048 53886194 -98651065 + MTEa LTR MaLR 18 165 -214 7 996 539 284 8 0 chr5 53886204 53886331 -98650928 + RSINE1 SINE B4 2 129 -36 7 996 297 0 0 0 chr5 53887910 53887943 -98649316 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 7 996 623 238 18 48 chr5 53887999 53888167 -98649092 + B4 SINE B4 125 287 -5 7 996 294 29 0 0 chr5 53888443 53888478 -98648781 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 7 996 231 36 0 0 chr5 53888823 53888851 -98648408 + (A)n Simple_repeat Simple_repeat 1 28 0 7 996 309 26 0 0 chr5 53889398 53889436 -98647823 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 7 996 981 226 167 25 chr5 53889557 53889874 -98647385 + ORR1D2 LTR MaLR 9 370 0 7 996 1198 246 39 16 chr5 53890122 53890485 -98646774 - RCHARR1 DNA MER1_type -15 959 589 7 996 941 73 6 18 chr5 53890486 53890653 -98646606 - RMER17B LTR ERVK -495 463 299 7 996 1312 254 55 3 chr5 53890639 53890906 -98646353 - RCHARR1 DNA MER1_type -366 608 331 7 996 351 0 0 0 chr5 53890906 53890945 -98646314 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 996 1312 267 307 9 chr5 53890945 53891196 -98646063 - RCHARR1 DNA MER1_type -644 330 3 7 996 215 314 116 13 chr5 53891413 53891568 -98645691 - MIRc SINE MIR -33 235 65 7 996 189 229 0 0 chr5 53892998 53893046 -98644213 + CT-rich Low_complexity Low_complexity 1 48 0 7 996 472 257 146 11 chr5 53893686 53893871 -98643388 + B3 SINE B2 1 210 -6 7 996 791 185 27 20 chr5 53893900 53894049 -98643210 + B1_Mur4 SINE Alu 1 150 0 7 996 620 244 59 0 chr5 53894125 53894260 -98642999 - B1_Mur1 SINE Alu -5 144 2 7 996 307 260 0 10 chr5 53894316 53894413 -98642846 - PB1D10 SINE Alu -7 110 15 7 996 595 290 51 71 chr5 53894841 53895196 -98642063 - ORR1E LTR MaLR -6 364 23 7 996 204 40 0 0 chr5 53895398 53895423 -98641836 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 996 800 154 0 0 chr5 53895897 53896027 -98641232 + B3 SINE B2 1 130 -86 7 996 634 279 88 15 chr5 53896031 53896293 -98640966 + MLT1C LTR MaLR 104 384 -83 7 996 307 302 102 17 chr5 53896419 53896537 -98640722 - B1F1 SINE Alu -5 144 17 7 996 223 26 77 0 chr5 53896550 53896589 -98640670 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 7 996 968 252 42 8 chr5 53896589 53896849 -98640410 - ORR1D2 LTR MaLR -29 341 73 7 996 272 234 16 0 chr5 53897288 53897352 -98639907 - ORR1D2 LTR MaLR -305 65 1 7 996 416 289 10 0 chr5 53897353 53897457 -98639802 - ID_B1 SINE B4 -118 106 2 7 996 1731 21 0 0 chr5 53897761 53897953 -98639306 + B2_Mm1t SINE B2 1 192 -1 7 996 761 251 216 27 chr5 53898783 53899111 -98638148 - MTD LTR MaLR -20 399 10 7 996 256 308 165 73 chr5 53901687 53901960 -98635299 - ORR1E LTR MaLR 0 359 62 7 996 315 0 0 0 chr5 53902949 53902984 -98634275 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 996 279 0 0 0 chr5 53904242 53904273 -98632986 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 7 996 761 209 11 0 chr5 53904274 53904451 -98632808 + CT-rich Low_complexity Low_complexity 2 180 0 7 996 388 186 14 0 chr5 53905072 53905142 -98632117 - ID4 SINE ID -10 73 3 7 996 568 299 69 0 chr5 53905176 53905393 -98631866 + L1MC2 LINE L1 5840 6071 -273 7 996 826 254 41 112 chr5 53905402 53905769 -98631490 - MTE2a LTR MaLR -18 401 54 7 996 442 241 73 0 chr5 53905814 53905951 -98631308 + L1MC2 LINE L1 6088 6234 -110 7 996 302 312 16 50 chr5 53906344 53906526 -98630733 - Tigger14a DNA MER2_type -9 315 140 7 996 943 89 72 29 chr5 53907049 53907060 -98630199 - B1_Mus1 SINE Alu -2 146 139 7 996 324 0 0 0 chr5 53907060 53907096 -98630163 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 7 996 943 89 72 29 chr5 53907096 53907223 -98630036 - B1_Mus1 SINE Alu -10 138 2 7 996 597 196 79 7 chr5 53907292 53907431 -98629828 + B1F SINE Alu 1 149 0 7 996 669 25 0 0 chr5 53907437 53907516 -98629743 + (GGAAA)n Simple_repeat Simple_repeat 2 80 0 7 996 1113 113 0 0 chr5 53907595 53907763 -98629496 + (GGAA)n Simple_repeat Simple_repeat 1 168 0 7 996 376 123 14 14 chr5 53908248 53908322 -98628937 + CT-rich Low_complexity Low_complexity 2 75 0 7 996 290 330 10 10 chr5 53909967 53910071 -98627188 - ID_B1 SINE B4 -119 105 2 8 996 240 59 0 0 chr5 53910804 53910838 -98626421 + (A)n Simple_repeat Simple_repeat 1 34 0 8 996 183 156 0 0 chr5 53912045 53912077 -98625182 + T-rich Low_complexity Low_complexity 1 32 0 8 996 223 71 48 0 chr5 53912167 53912209 -98625050 + (TAAAAA)n Simple_repeat Simple_repeat 1 44 0 8 996 201 386 16 25 chr5 53912901 53913023 -98624236 + L2a LINE L2 3295 3415 -11 8 996 1205 72 0 126 chr5 53913118 53913311 -98623948 + B2_Mm2 SINE B2 1 170 -25 8 996 1519 67 10 0 chr5 53913311 53913519 -98623740 - L1_Mus3 LINE L1 -8 6630 6421 8 996 1205 72 0 126 chr5 53913519 53913548 -98623711 + B2_Mm2 SINE B2 171 195 0 8 996 333 68 0 0 chr5 53913549 53913593 -98623666 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 8 996 365 300 143 64 chr5 53913831 53914159 -98623100 - ORR1E LTR MaLR -5 354 1 8 996 288 179 0 0 chr5 53914298 53914376 -98622883 + CT-rich Low_complexity Low_complexity 2 79 0 8 996 359 333 21 14 chr5 53915040 53915183 -98622076 - MLT1F LTR MaLR -93 455 312 8 996 345 24 0 0 chr5 53915852 53915894 -98621365 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 996 189 0 0 0 chr5 53915900 53915921 -98621338 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 8 996 227 320 19 39 chr5 53915926 53916030 -98621229 - MER103 DNA DNA -3 163 62 8 996 605 178 77 8 chr5 53916352 53916482 -98620777 + B1_Mur3 SINE Alu 11 149 0 8 996 215 404 17 52 chr5 53916484 53916714 -98620545 + MIRb SINE MIR 25 246 -22 8 996 441 0 0 0 chr5 53917454 53917503 -98619756 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 996 305 267 0 0 chr5 53918628 53918703 -98618556 + ID4_ SINE ID 1 75 -8 8 996 288 0 0 0 chr5 53920000 53920032 -98617227 + (CTTG)n Simple_repeat Simple_repeat 2 33 0 8 996 249 33 0 0 chr5 53920034 53920064 -98617195 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 8 996 258 156 0 0 chr5 53920064 53920109 -98617150 + CT-rich Low_complexity Low_complexity 2 46 0 8 996 1066 58 0 0 chr5 53920406 53920543 -98616716 + B1_Mus2 SINE Alu 2 138 -9 8 996 404 274 60 0 chr5 53920730 53920847 -98616412 - RSINE1 SINE B4 -37 128 5 8 996 1134 69 7 0 chr5 53921606 53921751 -98615508 - B1_Mus2 SINE Alu 0 147 2 8 996 302 307 11 78 chr5 53921912 53922103 -98615156 - L1ME2z LINE L1 -512 5932 5755 8 996 478 198 161 31 chr5 53922205 53922335 -98614924 + B1_Mus1 SINE Alu 2 148 0 8 996 242 220 0 0 chr5 53922514 53922564 -98614695 - L1MD LINE L1 -887 5472 5423 8 996 278 230 250 26 chr5 53922584 53922700 -98614559 - RSINE1 SINE B4 -21 144 3 8 996 890 168 0 7 chr5 53923230 53923380 -98613879 - B1_Mur4 SINE Alu -1 149 1 8 996 712 259 49 36 chr5 53923407 53923683 -98613576 + MTE2b LTR MaLR 150 419 0 8 996 375 23 0 0 chr5 53923825 53923869 -98613390 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 996 1281 267 99 34 chr5 53923903 53924399 -98612860 - L1MB4 LINE L1 -2 6178 5651 8 996 225 255 0 19 chr5 53925053 53925105 -98612154 + GA-rich Low_complexity Low_complexity 4 54 0 8 996 698 286 53 50 chr5 53925111 53925394 -98611865 + B4A SINE B4 3 286 -6 8 996 363 23 0 0 chr5 53925418 53925462 -98611797 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 996 929 114 53 13 chr5 53925509 53925660 -98611599 + B2_Mm2 SINE B2 2 158 -37 8 996 360 0 0 0 chr5 53925661 53925701 -98611558 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 8 996 180 77 0 0 chr5 53925788 53925814 -98611445 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 996 701 155 15 58 chr5 53925819 53925956 -98611303 - B1_Mus2 SINE Alu -15 132 2 8 996 28 0 0 0 chr5 53927108 53927136 -98610123 + AT_rich Low_complexity Low_complexity 1 28 0 8 996 195 331 173 23 chr5 53927312 53927612 -98609647 + L2 LINE L2 2732 3076 -343 8 996 207 100 0 0 chr5 53928195 53928225 -98609034 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 8 996 387 141 0 0 chr5 53928225 53928289 -98608970 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 8 996 1072 284 54 15 chr5 53928451 53928783 -98608476 + Tigger7 DNA MER2_type 1 345 -2146 8 996 262 269 35 44 chr5 53928785 53928898 -98608361 + Tigger7 DNA MER2_type 962 1073 -1418 8 996 183 184 0 0 chr5 53929265 53929303 -98607956 + CT-rich Low_complexity Low_complexity 2 39 0 8 996 495 0 0 0 chr5 53929843 53929898 -98607361 + (TC)n Simple_repeat Simple_repeat 1 55 0 8 996 840 194 13 98 chr5 53929898 53930123 -98607136 + Lx5 LINE L1 6813 7058 0 8 996 1206 55 0 0 chr5 53930458 53930604 -98606655 - B1_Mus2 SINE Alu 0 147 2 8 996 23 54 0 0 chr5 53931498 53931535 -98605724 + GC_rich Low_complexity Low_complexity 1 37 0 8 996 270 136 0 0 chr5 53931935 53931979 -98605280 + (T)n Simple_repeat Simple_repeat 1 44 0 8 996 1144 50 0 0 chr5 53931990 53932130 -98605129 - B1_Mus2 SINE Alu -6 141 2 8 996 738 62 0 0 chr5 53932161 53932257 -98605002 + (TC)n Simple_repeat Simple_repeat 2 97 0 8 996 1195 111 10 73 chr5 53932519 53932723 -98604536 - B2_Mm2 SINE B2 -3 192 2 8 996 231 36 0 0 chr5 53933757 53933785 -98603474 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 8 996 789 273 70 68 chr5 53933944 53934357 -98602902 + RMER10A LTR ERVL 29 442 0 8 996 565 248 7 41 chr5 53935098 53935245 -98602014 - ID_B1 SINE B4 -2 222 81 8 996 200 182 0 43 chr5 53936564 53936610 -98600649 + A-rich Low_complexity Low_complexity 1 44 0 8 996 270 264 0 53 chr5 53936670 53936746 -98600513 - B4A SINE B4 0 292 221 8 996 948 177 11 11 chr5 53937011 53937194 -98600065 + B2_Mm2 SINE B2 3 185 -10 8 996 845 204 0 0 chr5 53937290 53937432 -98599827 - B1_Mur1 SINE Alu -6 143 2 8 996 844 276 14 9 chr5 53937439 53937662 -98599597 - B4A SINE B4 -68 224 1 8 996 234 91 0 0 chr5 53938366 53938399 -98598860 + (T)n Simple_repeat Simple_repeat 1 33 0 8 996 743 176 0 0 chr5 53938872 53938991 -98598268 + B1_Mur4 SINE Alu 1 119 -31 8 996 308 44 44 0 chr5 53938993 53939038 -98598221 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 8 996 865 271 30 52 chr5 53939078 53939424 -98597835 - MTE2a LTR MaLR -43 376 37 8 996 199 310 70 63 chr5 53939750 53940036 -98597223 + L2a LINE L2 3138 3425 -1 8 996 414 289 19 0 chr5 53940434 53940538 -98596721 + PB1D10 SINE Alu 2 107 -10 8 996 288 208 13 89 chr5 53940931 53941010 -98596249 + ID4_ SINE ID 1 73 -10 8 996 1162 75 0 0 chr5 53941360 53941506 -98595753 - B1_Mus2 SINE Alu 0 147 2 8 996 534 159 26 94 chr5 53941599 53941781 -98595478 + ORR1C2 LTR MaLR 1 142 -242 8 996 228 56 0 0 chr5 53941751 53941787 -98595472 + ORR1C2 LTR MaLR 82 117 -277 8 996 1494 180 34 28 chr5 53941789 53941906 -98595353 + ORR1B2 LTR MaLR 41 154 -213 8 996 669 13 0 0 chr5 53941906 53941984 -98595275 + (TC)n Simple_repeat Simple_repeat 1 78 0 8 996 1494 180 34 28 chr5 53941984 53942191 -98595068 + ORR1B2 LTR MaLR 155 366 -1 8 996 744 279 88 5 chr5 53942218 53942423 -98594836 + ID_B1 SINE B4 1 222 -2 8 996 256 249 36 11 chr5 53943568 53943664 -98593595 - LTR37B LTR ERV1 -11 457 317 8 996 504 48 0 0 chr5 53943910 53943973 -98593286 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 996 333 0 0 0 chr5 53943977 53944014 -98593245 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 996 333 186 0 0 chr5 53944278 53944348 -98592911 + CT-rich Low_complexity Low_complexity 2 71 0 8 996 261 360 43 14 chr5 53944359 53944497 -98592762 - B1F SINE Alu -7 142 1 8 996 647 180 48 54 chr5 53944716 53944863 -98592396 + B1_Mur4 SINE Alu 5 150 0 8 996 411 56 0 0 chr5 53944866 53944920 -98592339 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 996 336 264 142 85 chr5 53944926 53945067 -98592192 - RSINE1 SINE B4 -15 150 2 8 996 1135 70 0 0 chr5 53945447 53945590 -98591669 - B1_Mus1 SINE Alu -3 145 3 8 996 462 200 100 39 chr5 53945642 53945772 -98591487 + B1_Mur2 SINE Alu 3 140 -9 8 996 22 35 0 0 chr5 53945793 53945822 -98591437 + AT_rich Low_complexity Low_complexity 1 29 0 8 996 330 151 0 0 chr5 53945880 53945953 -98591306 + T-rich Low_complexity Low_complexity 1 73 0 8 996 773 153 7 14 chr5 53945954 53946100 -98591159 - B1_Mur3 SINE Alu 0 149 5 8 996 277 276 93 71 chr5 53946405 53946588 -98590671 + RLTR23 LTR ERV1 242 428 -2 8 996 378 0 0 0 chr5 53946590 53946632 -98590627 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 996 336 169 68 16 chr5 53946759 53946864 -98590395 - MTC LTR MaLR -2 419 262 8 996 309 323 94 0 chr5 53947037 53947164 -98590095 - B1F SINE Alu -10 139 1 8 996 228 298 104 22 chr5 53947179 53947198 -98590061 - CYRA11_Mm Unknown Y-chromosome -212 405 261 8 996 588 130 200 0 chr5 53947198 53947313 -98589946 + URR1A DNA MER1_type 1 138 -88 8 996 700 188 0 20 chr5 53947505 53947652 -98589607 - B1_Mur4 SINE Alu 0 150 7 8 996 247 220 22 0 chr5 53948180 53948271 -98588988 + (TA)n Simple_repeat Simple_repeat 1 93 0 8 996 1247 41 0 0 chr5 53948461 53948607 -98588652 - B1_Mus1 SINE Alu -2 146 1 8 996 1253 34 0 0 chr5 53949645 53949792 -98587467 + B1_Mus2 SINE Alu 1 147 0 8 996 216 0 0 0 chr5 53949792 53949816 -98587443 + (A)n Simple_repeat Simple_repeat 1 24 0 8 996 1180 285 113 58 chr5 53949823 53949845 -98587414 - Lx8 LINE L1 -2 7471 7443 8 996 423 0 0 0 chr5 53949845 53949892 -98587367 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 996 1180 285 113 58 chr5 53949892 53950495 -98586764 - Lx8 LINE L1 -31 7442 6811 8 996 492 18 0 0 chr5 53950501 53950558 -98586701 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 996 752 156 94 22 chr5 53950957 53951095 -98586164 - B1_Mur4 SINE Alu -2 148 1 8 996 523 271 77 77 chr5 53951123 53951383 -98585876 - L1MA9 LINE L1 0 6312 6053 9 996 347 187 15 102 chr5 53951433 53951570 -98585689 - Lx9 LINE L1 -2 7642 7518 9 996 250 270 85 23 chr5 53951559 53951688 -98585571 - L1MA9 LINE L1 -237 6054 5918 9 996 399 165 92 10 chr5 53951748 53951846 -98585413 - PB1D10 SINE Alu -2 115 10 9 996 356 239 11 22 chr5 53951776 53951866 -98585393 - ID_B1 SINE B4 -63 161 73 9 996 421 261 49 35 chr5 53951936 53952079 -98585180 - B1F SINE Alu 0 149 5 9 996 234 304 14 0 chr5 53952202 53952271 -98584988 - ID4 SINE ID -11 72 3 9 996 492 146 0 0 chr5 53952787 53952890 -98584369 + (TC)n Simple_repeat Simple_repeat 2 104 0 9 996 1016 114 0 0 chr5 53953232 53953372 -98583887 - B1_Mus1 SINE Alu -8 140 1 9 996 1119 205 29 0 chr5 53953374 53953579 -98583680 - B3 SINE B2 -3 213 3 9 996 1207 61 0 0 chr5 53954063 53954211 -98583048 + B1_Mus1 SINE Alu 1 148 0 9 996 357 300 20 0 chr5 53954516 53954616 -98582643 + PB1D10 SINE Alu 16 117 0 9 996 25 65 0 0 chr5 53955363 53955409 -98581850 + AT_rich Low_complexity Low_complexity 1 46 0 9 996 270 116 0 0 chr5 53957030 53957073 -98580186 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 996 432 0 0 0 chr5 53957543 53957591 -98579668 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 996 1075 51 65 0 chr5 53958926 53959064 -98578195 - B1_Mus2 SINE Alu 0 147 1 9 996 428 192 141 0 chr5 53959242 53959341 -98577918 - B1_Mur3 SINE Alu -35 114 2 9 996 1555 27 38 0 chr5 53959353 53959537 -98577722 - B2_Mm1a SINE B2 -2 191 1 9 996 254 191 0 0 chr5 53959896 53959943 -98577316 + B1_Mus2 SINE Alu 77 123 -24 9 996 1194 41 0 40 chr5 53960091 53960243 -98577016 - B1_Mus1 SINE Alu -1 147 2 9 996 857 186 7 0 chr5 53960402 53960547 -98576712 + B1_Mus2 SINE Alu 1 146 -1 9 996 22 56 0 0 chr5 53961471 53961507 -98575752 + AT_rich Low_complexity Low_complexity 1 36 0 9 996 216 309 0 0 chr5 53962167 53962222 -98575037 + MIR SINE MIR 76 130 -78 9 996 1000 249 18 26 chr5 53962370 53962642 -98574617 + B4A SINE B4 4 273 -19 9 996 630 0 0 0 chr5 53962795 53962865 -98574394 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 9 996 900 135 0 0 chr5 53962941 53963089 -98574170 + (TTC)n Simple_repeat Simple_repeat 3 150 0 9 996 239 261 15 44 chr5 53963164 53963232 -98574027 + ID4_ SINE ID 16 81 -2 9 996 440 207 24 0 chr5 53963182 53963264 -98573995 + ID_B1 SINE B4 32 115 -109 9 996 349 70 17 17 chr5 53963432 53963490 -98573769 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 9 996 951 287 100 26 chr5 53963588 53964089 -98573170 - L1MB7 LINE L1 -211 5973 5436 9 996 255 319 14 0 chr5 53964188 53964257 -98573002 - tRNA-Ala-GCY_ tRNA tRNA -5 70 1 9 996 589 318 0 0 chr5 53964373 53964527 -98572732 - RSINE1 SINE B4 -4 161 8 9 996 225 0 0 0 chr5 53964545 53964570 -98572689 + (T)n Simple_repeat Simple_repeat 1 25 0 9 996 1011 16 0 0 chr5 53964579 53964707 -98572552 - B1_Mm SINE Alu -1 146 19 9 996 357 236 9 9 chr5 53964707 53964818 -98572441 - L1MB7 LINE L1 -845 5301 5191 9 996 239 217 56 28 chr5 53964835 53964906 -98572353 - B4A SINE B4 0 292 220 9 996 276 129 100 56 chr5 53965031 53965121 -98572138 - Lx9 LINE L1 0 7644 7551 9 996 432 0 0 0 chr5 53965134 53965182 -98572077 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 996 1021 216 149 0 chr5 53965183 53965424 -98571835 - Lx9 LINE L1 -167 7477 7201 9 996 484 250 176 15 chr5 53965424 53965623 -98571636 - B4A SINE B4 -60 232 2 9 996 404 176 44 0 chr5 53965623 53965714 -98571545 - L1MB7 LINE L1 -944 5202 5108 9 996 391 336 31 0 chr5 53965716 53965844 -98571415 - ID_B1 SINE B4 -1 223 92 9 996 1143 62 0 20 chr5 53965987 53966136 -98571123 - B1_Mm SINE Alu -1 146 1 9 996 185 180 0 20 chr5 53966170 53966221 -98571038 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 996 528 120 0 0 chr5 53966220 53966320 -98570939 + (GA)n Simple_repeat Simple_repeat 1 100 0 9 996 385 269 9 9 chr5 53966324 53966429 -98570830 - B3A SINE B2 -53 145 41 9 996 638 284 150 10 chr5 53966451 53966944 -98570315 - L1MB7 LINE L1 -1191 4955 4372 9 996 372 259 24 30 chr5 53966945 53967062 -98570197 - PB1D10 SINE Alu -1 119 1 9 996 785 165 0 14 chr5 53967119 53967260 -98569999 + B1_Mus1 SINE Alu 1 139 -9 9 996 352 315 39 35 chr5 53967336 53967530 -98569729 - L1MB7 LINE L1 -1961 4185 3986 9 996 597 64 0 0 chr5 53967582 53967660 -98569599 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 9 996 381 284 120 61 chr5 53967997 53968289 -98568970 + B4 SINE B4 1 273 -19 9 996 364 222 0 47 chr5 53968608 53968693 -98568566 - ID4 SINE ID -1 82 2 9 996 1434 35 0 0 chr5 53969538 53969774 -98567485 + (TTCC)n Simple_repeat Simple_repeat 1 236 0 9 996 966 105 0 24 chr5 53969774 53969940 -98567319 + (TCCC)n Simple_repeat Simple_repeat 4 165 0 9 996 565 244 73 104 chr5 53969981 53970173 -98567086 + B3A SINE B2 1 186 -9 9 996 545 169 144 8 chr5 53970185 53970310 -98566949 + B1_Mus2 SINE Alu 6 147 0 9 996 383 170 8 35 chr5 53970339 53970460 -98566799 + B3 SINE B2 3 216 0 9 996 567 270 123 45 chr5 53970928 53971196 -98566063 - B4A SINE B4 -2 290 2 9 996 1182 68 0 0 chr5 53971245 53971391 -98565868 + B1_Mus1 SINE Alu 3 148 0 9 996 258 156 0 0 chr5 53971394 53971439 -98565820 + A-rich Low_complexity Low_complexity 81 125 0 9 996 527 311 158 8 chr5 53972427 53972583 -98564676 - B4A SINE B4 0 292 110 9 996 411 21 0 0 chr5 53972583 53972631 -98564628 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 996 527 311 158 8 chr5 53972631 53972727 -98564532 - B4A SINE B4 -183 109 2 9 996 24 32 0 0 chr5 53972852 53972883 -98564376 + AT_rich Low_complexity Low_complexity 1 31 0 9 996 439 268 38 32 chr5 53973244 53973402 -98563857 - RMER10B LTR ERVL -46 352 194 9 996 292 207 158 0 chr5 53973466 53973548 -98563711 + B1_Mur1 SINE Alu 35 129 -20 9 996 534 79 34 0 chr5 53975289 53975378 -98561881 + (CTCA)n Simple_repeat Simple_repeat 1 92 0 9 996 896 244 25 10 chr5 53975446 53975649 -98561610 - B3 SINE B2 -10 206 1 9 996 953 256 57 26 chr5 53975789 53976195 -98561064 - Lx7 LINE L1 -1594 6050 5632 9 996 555 150 16 16 chr5 53976497 53976619 -98560640 + G-rich Low_complexity Low_complexity 2 123 0 9 996 355 274 62 108 chr5 53977167 53977382 -98559877 + B4A SINE B4 2 215 -77 9 996 729 86 259 0 chr5 53977382 53977498 -98559761 + B1_Mus1 SINE Alu 2 147 -1 9 996 350 285 66 151 chr5 53977498 53977600 -98559659 + B4 SINE B4 216 292 0 9 996 193 347 46 33 chr5 53978463 53978615 -98558644 - L2 LINE L2 -638 2781 2628 9 996 467 248 68 0 chr5 53978745 53978862 -98558397 + RSINE1 SINE B4 37 161 -4 9 996 405 0 0 0 chr5 53979188 53979233 -98558026 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 996 250 0 73 24 chr5 53980075 53980116 -98557143 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 9 996 215 122 20 0 chr5 53980366 53980415 -98556844 + (CCCCG)n Simple_repeat Simple_repeat 2 51 0 9 996 236 301 63 21 chr5 53981334 53981429 -98555830 + L2b LINE L2 3276 3374 -1 9 996 221 262 9 46 chr5 53981793 53981901 -98555358 + G-rich Low_complexity Low_complexity 5 108 0 9 996 266 265 17 45 chr5 53982032 53982210 -98555049 + (CGGGG)n Simple_repeat Simple_repeat 5 177 0 9 996 22 56 0 0 chr5 53982222 53982258 -98555001 + GC_rich Low_complexity Low_complexity 1 36 0 9 996 34 0 0 0 chr5 53985133 53985167 -98552092 + AT_rich Low_complexity Low_complexity 1 34 0 9 996 324 225 34 0 chr5 53985458 53985547 -98551712 - PB1D10 SINE Alu -9 108 17 9 996 650 189 276 6 chr5 53986320 53986490 -98550769 - B3 SINE B2 0 216 1 9 996 1153 52 0 25 chr5 53986714 53986873 -98550386 + B2_Mm2 SINE B2 1 155 -40 9 996 222 37 0 0 chr5 53986873 53986900 -98550359 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 9 996 441 218 89 101 chr5 53987218 53987295 -98549964 + B4 SINE B4 123 196 -96 9 996 630 0 0 0 chr5 53987295 53987365 -98549894 + (GGGAGA)n Simple_repeat Simple_repeat 4 73 0 9 996 441 218 89 101 chr5 53987365 53987445 -98549814 + B4 SINE B4 197 278 -14 9 996 189 0 0 0 chr5 53990181 53990202 -98547057 + (TTG)n Simple_repeat Simple_repeat 1 21 0 9 996 354 23 0 0 chr5 53990584 53990627 -98546632 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 996 21 0 0 0 chr5 53990653 53990674 -98546585 + AT_rich Low_complexity Low_complexity 1 21 0 9 996 528 280 7 0 chr5 53990827 53990970 -98546289 - B1F SINE Alu 0 149 6 9 996 283 290 67 30 chr5 53990982 53991117 -98546142 - B1F SINE Alu -9 140 1 9 996 453 183 12 0 chr5 53991769 53991851 -98545408 - B1_Mus2 SINE Alu -50 97 15 9 996 1650 26 0 20 chr5 53992005 53992201 -98545058 - B2_Mm1a SINE B2 0 193 2 9 996 32 26 0 0 chr5 53992257 53992296 -98544963 + AT_rich Low_complexity Low_complexity 1 39 0 9 996 21 0 0 0 chr5 53992380 53992401 -98544858 + AT_rich Low_complexity Low_complexity 1 21 0 9 996 689 265 48 24 chr5 53992440 53992649 -98544610 + B3 SINE B2 3 216 0 9 996 1182 112 23 6 chr5 53992937 53993108 -98544151 + B2_Mm2 SINE B2 3 176 -19 9 996 187 234 20 60 chr5 53993404 53993454 -98543805 + L3 LINE CR1 2157 2204 -2285 9 996 23 0 0 0 chr5 53993998 53994021 -98543238 + GC_rich Low_complexity Low_complexity 1 23 0 9 996 216 0 0 0 chr5 53994440 53994464 -98542795 + (TA)n Simple_repeat Simple_repeat 2 25 0 9 996 25 51 0 0 chr5 53994574 53994613 -98542646 + AT_rich Low_complexity Low_complexity 1 39 0 9 996 198 103 0 0 chr5 53994629 53994658 -98542601 + (TTA)n Simple_repeat Simple_repeat 2 30 0 9 996 280 274 151 18 chr5 53995548 53995767 -98541492 - Lx7 LINE L1 0 7696 7449 9 996 1211 271 79 11 chr5 53995826 53996180 -98541079 - Lx7 LINE L1 -465 7231 6854 9 996 625 256 77 77 chr5 53996240 53996422 -98540837 - B3A SINE B2 -16 182 1 9 996 276 30 0 0 chr5 53997034 53997067 -98540192 + (TC)n Simple_repeat Simple_repeat 2 34 0 9 996 364 82 33 0 chr5 53997311 53997372 -98539887 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1 996 716 176 0 35 chr5 53997408 53997549 -98539710 + B1_Mur4 SINE Alu 14 149 -1 1 996 188 143 24 0 chr5 53997595 53997637 -98539622 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 1 996 242 338 0 12 chr5 53997878 53997959 -98539300 - ID4_ SINE ID -2 81 2 1 996 1350 67 0 16 chr5 53997982 53998165 -98539094 - B2_Mm2 SINE B2 -14 181 2 1 996 684 168 43 14 chr5 53999176 53999315 -98537944 - B1_Mur4 SINE Alu 0 150 8 1 996 328 206 16 116 chr5 53999211 53999332 -98537927 - MT2B LTR ERVL -337 264 156 1 996 281 265 103 0 chr5 54000311 54000379 -98536880 + ID4_ SINE ID 3 77 -6 1 996 461 228 59 89 chr5 54000443 54000578 -98536681 - B1F SINE Alu 0 149 19 2 996 242 354 12 0 chr5 54000640 54000722 -98536537 - PB1D10 SINE Alu -21 96 14 3 996 315 0 0 0 chr5 54001181 54001216 -98536043 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 996 24 53 0 0 chr5 54001491 54001529 -98535730 + AT_rich Low_complexity Low_complexity 1 38 0 5 997 541 267 92 20 chr5 54001912 54002107 -98535152 - MER2 DNA MER2_type 0 345 137 6 997 345 147 160 49 chr5 54002102 54002220 -98535039 - B2_Mm2 SINE B2 -1 192 47 7 997 677 103 331 0 chr5 54002267 54002403 -98534856 - B2_Mm2 SINE B2 -14 181 1 8 997 206 0 69 0 chr5 54002873 54002902 -98534357 + (TTTTTA)n Simple_repeat Simple_repeat 6 36 0 9 997 1041 116 7 0 chr5 54002903 54003049 -98534210 - B1_Mus1 SINE Alu 0 148 2 1 997 555 158 50 50 chr5 54003584 54003704 -98533555 - PB1D9 SINE Alu 0 120 1 1 997 874 259 19 28 chr5 54004232 54004443 -98532816 - B3 SINE B2 -7 209 1 1 997 1683 256 45 65 chr5 54004794 54005409 -98531850 - RLTR40 LTR ERVK -4 813 211 1 997 725 180 0 0 chr5 54005439 54005561 -98531698 - B1_Mm SINE Alu -25 122 1 1 997 448 211 74 68 chr5 54005570 54005733 -98531526 - RLTR40 LTR ERVK -653 164 1 1 997 181 264 19 19 chr5 54005733 54005787 -98531472 + MIR SINE MIR 95 148 -60 1 997 804 318 65 46 chr5 54006914 54007286 -98529973 - MER21B LTR ERV1 -89 774 396 1 997 877 78 35 104 chr5 54007291 54007435 -98529824 + B1_Mus1 SINE Alu 2 135 -13 1 997 23 54 0 0 chr5 54007573 54007610 -98529649 + AT_rich Low_complexity Low_complexity 1 37 0 1 997 25 31 0 0 chr5 54007841 54007873 -98529386 + AT_rich Low_complexity Low_complexity 1 32 0 1 997 810 223 106 25 chr5 54008082 54008317 -98528942 - RMER1C Other Other -18 1324 1071 2 997 472 325 35 12 chr5 54010329 54010500 -98526759 + RMER15 LTR ERVL 380 554 -21 2 997 892 161 173 0 chr5 54010986 54011154 -98526105 + B3 SINE B2 1 197 -19 2 997 1196 144 72 5 chr5 54012274 54012483 -98524776 + URR1B DNA MER1_type 3 225 0 2 997 189 189 27 0 chr5 54012584 54012621 -98524638 - MIRc SINE MIR -117 151 114 2 997 639 230 95 24 chr5 54013934 54014103 -98523156 + B3A SINE B2 2 182 -16 2 997 1608 145 151 57 chr5 54014336 54014687 -98522572 - ORR1C2 LTR MaLR 0 384 1 2 997 718 233 215 18 chr5 54015043 54015552 -98521707 - L1MB3 LINE L1 -316 5867 5259 2 997 923 194 133 110 chr5 54015563 54015961 -98521298 + MT2A LTR ERVL 1 528 -73 2 997 1234 149 104 36 chr5 54016027 54016305 -98520954 + ORR1C2 LTR MaLR 78 374 -10 2 997 1189 54 0 7 chr5 54017586 54017735 -98519524 - B1_Mus1 SINE Alu 0 148 1 3 997 243 0 0 0 chr5 54017735 54017762 -98519497 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 997 226 143 351 0 chr5 54018358 54018435 -98518824 - B3 SINE B2 -103 113 10 3 997 10892 22 0 0 chr5 54018976 54020991 -98516268 - L1Md_A LINE L1 0 6582 4568 3 997 21 71 0 0 chr5 54021086 54021128 -98516131 + AT_rich Low_complexity Low_complexity 1 42 0 3 997 222 118 0 0 chr5 54021191 54021225 -98516034 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 3 997 493 267 8 48 chr5 54021464 54021590 -98515669 + B1_Mm SINE Alu 8 128 -19 3 997 217 244 0 0 chr5 54021590 54021635 -98515624 + GA-rich Low_complexity Low_complexity 2 46 0 3 997 238 218 127 0 chr5 54021911 54021966 -98515293 + MER46C DNA MER2_type 267 328 -10 3 997 351 0 0 0 chr5 54022146 54022185 -98515074 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 997 655 68 34 0 chr5 54023378 54023466 -98513793 - B2_Mm2 SINE B2 -103 92 2 4 997 393 81 0 0 chr5 54024009 54024071 -98513188 + (TC)n Simple_repeat Simple_repeat 2 63 0 4 997 256 276 238 24 chr5 54024076 54024202 -98513057 - RSINE1 SINE B4 -11 154 2 4 997 1367 256 109 27 chr5 54024321 54024798 -98512461 - RMER5 LTR ERV1 -18 516 1 4 997 286 258 75 28 chr5 54025886 54026020 -98511239 - B4 SINE B4 -138 154 4 4 997 34 42 0 0 chr5 54026537 54026585 -98510674 + AT_rich Low_complexity Low_complexity 1 48 0 4 997 23 54 0 0 chr5 54026698 54026735 -98510524 + AT_rich Low_complexity Low_complexity 1 37 0 4 997 958 97 147 6 chr5 54027414 54027570 -98509689 + B2_Mm1t SINE B2 2 179 -14 4 997 1030 213 215 16 chr5 54027842 54028205 -98509054 - RMER5 LTR ERV1 -52 482 48 4 997 207 0 0 0 chr5 54029110 54029133 -98508126 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 997 468 0 0 0 chr5 54029326 54029378 -98507881 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 997 297 68 0 0 chr5 54029378 54029422 -98507837 + (GA)n Simple_repeat Simple_repeat 2 45 0 5 997 284 158 0 17 chr5 54029709 54029767 -98507492 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 5 997 623 200 24 42 chr5 54030340 54030486 -98506773 - B1_Mur4 SINE Alu 0 148 1 5 997 875 138 0 76 chr5 54030530 54030687 -98506572 - B1_Mus1 SINE Alu -3 145 1 5 997 246 302 33 86 chr5 54031436 54031588 -98505671 + L2a LINE L2 3205 3348 -78 5 997 739 0 22 0 chr5 54031816 54031907 -98505352 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 5 997 829 186 0 0 chr5 54031911 54032035 -98505224 - B1_Mur3 SINE Alu -24 125 2 5 997 350 292 115 7 chr5 54032236 54032384 -98504875 + Charlie8 DNA MER1_type 314 477 -1951 5 997 1176 76 0 0 chr5 54033997 54034142 -98503117 - B1_Mus2 SINE Alu -2 145 1 5 997 256 277 124 16 chr5 54034837 54034958 -98502301 - RSINE1 SINE B4 -29 136 3 6 997 605 147 29 0 chr5 54035553 54035655 -98501604 + PB1D9 SINE Alu 2 106 -14 6 997 927 158 37 27 chr5 54036233 54036421 -98500838 - B2_Mm2 SINE B2 -5 190 1 6 997 1406 54 32 21 chr5 54037817 54038007 -98499252 - B2_Mm2 SINE B2 -2 193 2 6 997 234 105 0 0 chr5 54038180 54038218 -98499041 + (C)n Simple_repeat Simple_repeat 1 38 0 6 997 207 100 0 0 chr5 54038224 54038254 -98499005 + (T)n Simple_repeat Simple_repeat 1 30 0 6 997 1176 55 0 7 chr5 54038254 54038401 -98498858 - B1_Mus2 SINE Alu 0 147 2 6 997 22 70 0 0 chr5 54039135 54039178 -98498081 + AT_rich Low_complexity Low_complexity 1 43 0 6 997 318 294 51 70 chr5 54040021 54040178 -98497081 + L1MC4a LINE L1 7719 7872 -10 6 997 1122 43 0 0 chr5 54040186 54040326 -98496933 + B1_Mus1 SINE Alu 9 148 0 6 997 483 231 58 77 chr5 54040188 54040343 -98496916 + B4A SINE B4 95 246 -46 7 997 734 189 121 7 chr5 54041751 54041900 -98495359 + URR1A DNA MER1_type 1 166 -60 7 997 293 376 44 13 chr5 54042158 54042317 -98494942 + MER5A1 DNA MER1_type 2 165 -1 7 997 829 107 12 12 chr5 54043015 54043186 -98494073 + (TGAG)n Simple_repeat Simple_repeat 4 174 0 7 997 225 0 0 0 chr5 54047194 54047219 -98490040 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 997 224 234 21 0 chr5 54047793 54047840 -98489419 - ID2 SINE ID 0 83 36 7 997 426 307 118 0 chr5 54050073 54050200 -98487059 - ID_B1 SINE B4 -2 222 81 7 997 296 280 55 27 chr5 54050410 54050520 -98486739 - MLT1A LTR MaLR -69 305 193 7 997 212 273 15 29 chr5 54051021 54051089 -98486170 - MIR3 SINE MIR -40 168 102 7 997 1267 98 16 11 chr5 54052064 54052250 -98485009 + B2_Mm2 SINE B2 5 191 -4 7 997 865 186 10 74 chr5 54052574 54052777 -98484482 + B2_Mm2 SINE B2 1 190 -5 8 997 1964 180 82 8 chr5 54053594 54053986 -98483273 - MTC LTR MaLR 0 421 1 8 997 251 260 61 104 chr5 54054178 54054341 -98482918 - Tigger5 DNA MER2_type -1110 1296 1141 8 997 186 323 121 29 chr5 54055742 54055949 -98481310 + L2c LINE L2 2571 2796 -623 8 997 303 261 171 132 chr5 54055997 54056248 -98481011 - MTEb LTR MaLR -1 378 118 8 997 185 319 29 105 chr5 54056654 54056759 -98480500 + L2c LINE L2 3258 3354 -33 8 997 343 269 141 27 chr5 54057158 54057307 -98479952 - MT2B LTR ERVL -2 599 434 8 997 297 170 29 105 chr5 54057325 54057430 -98479829 - RCHARR1 DNA MER1_type -82 892 796 8 997 445 193 113 52 chr5 54057419 54057447 -98479812 - B3 SINE B2 -2 214 193 8 997 185 65 32 0 chr5 54057447 54057478 -98479781 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 8 997 445 193 113 52 chr5 54057478 54057564 -98479695 - B3 SINE B2 -24 192 95 8 997 1271 194 105 28 chr5 54057576 54057899 -98479360 - RCHARR1 DNA MER1_type -160 814 467 8 997 393 261 8 165 chr5 54057929 54058062 -98479197 - RSINE1 SINE B4 -23 142 31 8 997 1323 281 132 7 chr5 54058079 54058202 -98479057 - RCHARR1 DNA MER1_type -483 491 338 8 997 1483 69 11 0 chr5 54058202 54058391 -98478868 + B2_Mm1t SINE B2 2 192 -1 9 997 1323 281 132 7 chr5 54058391 54058693 -98478566 - RCHARR1 DNA MER1_type -637 337 13 8 997 668 292 75 57 chr5 54058893 54059403 -98477856 + L1_Mur3 LINE L1 4999 5481 -399 9 997 1242 84 0 0 chr5 54059411 54059577 -98477682 + ORR1A2 LTR MaLR 2 167 -160 9 997 1678 99 0 20 chr5 54059577 54059825 -98477434 + L1_Mus4 LINE L1 6394 6636 0 9 997 3147 53 8 8 chr5 54059837 54060233 -98477026 + MTA_Mm LTR MaLR 1 396 0 9 997 22 0 0 0 chr5 54060421 54060443 -98476816 + AT_rich Low_complexity Low_complexity 1 22 0 9 997 1040 177 57 2 chr5 54060548 54060772 -98476487 - L1_Mus4 LINE L1 -248 6388 6212 9 997 1154 68 0 20 chr5 54060908 54061058 -98476201 - B1_Mus1 SINE Alu 0 148 2 9 997 420 255 254 21 chr5 54061537 54061773 -98475486 - MER67A LTR ERV1 -237 306 16 9 997 748 235 42 117 chr5 54061941 54062326 -98474933 + RMER17C LTR ERVK 6 361 -49 9 997 459 0 0 0 chr5 54062356 54062407 -98474852 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 997 998 53 23 0 chr5 54062502 54062633 -98474626 - B1_Mus1 SINE Alu -11 137 4 1 997 1377 157 11 64 chr5 54062668 54062933 -98474326 - RLTR23 LTR ERV1 -1 429 179 1 997 424 223 40 33 chr5 54062926 54063078 -98474181 - RLTR23 LTR ERV1 -159 271 86 1 997 638 236 17 83 chr5 54063277 54063369 -98473890 - B4A SINE B4 -123 169 89 1 997 195 100 0 0 chr5 54063369 54063399 -98473860 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 1 997 638 236 17 83 chr5 54063399 54063486 -98473773 - B4A SINE B4 -204 88 2 1 997 624 102 0 0 chr5 54063968 54064066 -98473193 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 997 332 268 21 0 chr5 54064090 54064187 -98473072 - MER5A DNA MER1_type -58 131 33 1 997 563 165 39 0 chr5 54064565 54064668 -98472591 + MTD LTR MaLR 5 111 -308 1 997 910 142 7 7 chr5 54064670 54064682 -98472577 - B1_Mur4 SINE Alu 0 150 139 1 997 183 80 0 0 chr5 54064682 54064707 -98472552 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 1 997 910 142 7 7 chr5 54064707 54064843 -98472416 - B1_Mur4 SINE Alu -12 138 2 1 997 264 208 186 10 chr5 54064851 54064953 -98472306 - L1M2 LINE L1 -867 5276 5157 1 997 2669 140 39 39 chr5 54065011 54065493 -98471766 + RLTR45 LTR ERVK 1 482 0 1 997 6319 115 126 64 chr5 54065629 54066232 -98471027 + RMER17C-int LTR ERVK 1917 2595 -643 1 997 255 204 0 20 chr5 54066232 54066282 -98470977 - LSU-rRNA_Hsa rRNA rRNA -783 4252 4204 1 997 6319 115 126 64 chr5 54066282 54066528 -98470731 + RMER17C-int LTR ERVK 2596 2874 -364 1 997 279 0 0 0 chr5 54066528 54066559 -98470700 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 997 6319 115 126 64 chr5 54066559 54066871 -98470388 + RMER17C-int LTR ERVK 2875 3202 -36 1 997 1132 175 34 31 chr5 54066872 54067180 -98470079 + RMER17C LTR ERVK 27 512 -297 1 997 423 127 70 53 chr5 54067191 54067498 -98469761 + (CTATA)n Simple_repeat Simple_repeat 1 312 0 1 997 928 118 26 13 chr5 54067501 54067656 -98469603 + RMER17C LTR ERVK 253 409 -1 1 997 445 338 27 20 chr5 54068881 54069029 -98468230 + RSINE1 SINE B4 8 156 -9 1 997 23 0 0 0 chr5 54069048 54069071 -98468188 + AT_rich Low_complexity Low_complexity 1 23 0 1 997 294 119 33 17 chr5 54069133 54069193 -98468066 + RLTR19-int LTR ERVK 2330 2390 -3747 1 997 1217 55 0 0 chr5 54069194 54069340 -98467919 + B1_Mus2 SINE Alu 1 146 -1 1 997 270 116 0 0 chr5 54069352 54069395 -98467864 + (A)n Simple_repeat Simple_repeat 1 43 0 1 997 217 282 38 13 chr5 54069524 54069603 -98467656 + CT-rich Low_complexity Low_complexity 5 85 0 1 997 215 61 30 0 chr5 54070519 54070552 -98466707 + (CCCCG)n Simple_repeat Simple_repeat 1 34 0 1 997 270 375 66 31 chr5 54070871 54071099 -98466160 - ORR1E LTR MaLR -105 254 19 1 997 225 0 0 0 chr5 54071404 54071429 -98465830 + (T)n Simple_repeat Simple_repeat 1 25 0 1 997 982 109 65 0 chr5 54071429 54071567 -98465692 - B1_Mus1 SINE Alu 0 148 2 1 997 1098 101 0 0 chr5 54071853 54071992 -98465267 - B1_Mus2 SINE Alu -8 139 1 1 997 22 0 0 0 chr5 54071992 54072014 -98465245 + AT_rich Low_complexity Low_complexity 1 22 0 1 997 1164 89 9 108 chr5 54072113 54072326 -98464933 - B2_Mm1t SINE B2 0 193 2 1 997 22 35 0 0 chr5 54072326 54072355 -98464904 + AT_rich Low_complexity Low_complexity 1 29 0 1 997 451 272 13 33 chr5 54072407 54072559 -98464700 + B1F SINE Alu 1 149 0 1 997 4651 75 20 0 chr5 54072848 54073435 -98463824 - MT2B LTR ERVL 0 601 3 1 997 744 257 34 159 chr5 54073784 54074165 -98463094 + MTE2a LTR MaLR 1 391 -28 1 997 696 145 61 61 chr5 54074206 54074338 -98462921 - B1_Mur2 SINE Alu 0 149 18 1 997 601 214 0 18 chr5 54074743 54074857 -98462402 - PB1D10 SINE Alu 0 117 6 1 997 270 306 0 0 chr5 54074802 54074864 -98462395 - B4A SINE B4 -147 145 84 1 997 380 355 17 23 chr5 54075188 54075364 -98461895 - MIRb SINE MIR -62 206 32 1 997 1886 207 11 3 chr5 54075402 54075756 -98461503 + Lx8 LINE L1 6229 6585 -888 1 997 1976 253 47 55 chr5 54075854 54076453 -98460806 + Lx8 LINE L1 6528 7121 -352 1 997 317 145 0 16 chr5 54076469 54076532 -98460727 + GA-rich Low_complexity Low_complexity 2 63 0 1 997 245 284 99 10 chr5 54077022 54077174 -98460085 + MIR SINE MIR 19 190 -86 1 997 429 20 0 0 chr5 54077992 54078042 -98459217 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 997 221 273 30 15 chr5 54078924 54078991 -98458268 - ID4_ SINE ID -4 79 12 1 997 469 285 74 27 chr5 54079004 54079152 -98458107 - U1 snRNA snRNA 0 165 11 1 997 2668 65 3 20 chr5 54080361 54080719 -98456540 + RLTR8 LTR ERVK 3 354 -11 1 997 585 302 107 78 chr5 54081324 54081697 -98455562 + MLT1B LTR MaLR 7 390 0 1 997 415 241 13 122 chr5 54082314 54082470 -98454789 + MLT1D LTR MaLR 213 351 -154 1 997 241 293 110 10 chr5 54082825 54082925 -98454334 + MER53 DNA hAT 84 193 0 1 997 469 322 74 14 chr5 54083251 54083572 -98453687 - MLT1B LTR MaLR -5 385 1 1 997 180 0 0 0 chr5 54085135 54085155 -98452104 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 997 655 263 45 26 chr5 54085452 54085608 -98451651 - RSINE1 SINE B4 -4 161 3 1 997 181 292 0 0 chr5 54085631 54085679 -98451580 + MIR SINE MIR 63 110 -152 1 997 2481 173 31 72 chr5 54085718 54085751 -98451508 - RLTR20B3 LTR ERVK -58 519 487 1 997 351 0 0 0 chr5 54085751 54085790 -98451469 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 997 2481 173 31 72 chr5 54085790 54086297 -98450962 - RLTR20B3 LTR ERVK -91 486 3 1 997 206 291 75 75 chr5 54086797 54086890 -98450369 - MIR SINE MIR -77 131 39 1 997 1179 117 0 0 chr5 54087106 54087286 -98449973 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1 997 1265 174 19 5 chr5 54088647 54088860 -98448399 + URR1B DNA MER1_type 7 222 -3 1 997 267 31 0 0 chr5 54089643 54089675 -98447584 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 1 997 423 92 0 0 chr5 54089954 54090019 -98447240 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 997 216 158 0 0 chr5 54091501 54091539 -98445720 + (CCG)n Simple_repeat Simple_repeat 3 40 0 1 997 312 91 0 0 chr5 54091747 54091791 -98445468 + (TGG)n Simple_repeat Simple_repeat 1 44 0 1 997 439 325 8 0 chr5 54092858 54092975 -98444284 + PB1 SINE Alu 1 118 -9 1 997 1113 76 0 7 chr5 54093169 54093315 -98443944 - B1_Mus2 SINE Alu -1 146 2 1 997 281 280 80 19 chr5 54093346 54093473 -98443786 - MIRb SINE MIR -101 161 30 1 997 703 193 12 6 chr5 54095318 54095485 -98441774 + CT-rich Low_complexity Low_complexity 2 169 0 1 997 249 254 14 14 chr5 54095771 54095843 -98441416 + B1_Mur4 SINE Alu 77 148 -2 1 997 231 286 0 0 chr5 54095963 54096026 -98441233 - L1MB5 LINE L1 -10 6164 6102 1 997 342 0 0 0 chr5 54096890 54096928 -98440331 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 997 549 90 0 0 chr5 54097222 54097311 -98439948 + (CA)n Simple_repeat Simple_repeat 1 89 0 1 997 420 37 0 0 chr5 54098332 54098386 -98438873 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 997 300 27 0 0 chr5 54098965 54099002 -98438257 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 997 522 0 0 0 chr5 54099002 54099060 -98438199 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 997 646 331 122 23 chr5 54100389 54100782 -98436477 + MT2A LTR ERVL 1 432 -101 1 997 267 238 133 120 chr5 54100804 54100919 -98436340 + MT2A LTR ERVL 372 489 -44 1 997 414 0 0 0 chr5 54100919 54100965 -98436294 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 997 267 238 133 120 chr5 54100965 54101007 -98436252 + MT2A LTR ERVL 490 531 -2 1 997 224 159 22 22 chr5 54101439 54101484 -98435775 + CT-rich Low_complexity Low_complexity 4 48 0 1 997 458 312 72 93 chr5 54102305 54102595 -98434664 - B4A SINE B4 -5 287 4 1 997 512 329 107 9 chr5 54103482 54103706 -98433553 + B4 SINE B4 1 246 -46 1 997 439 177 38 0 chr5 54103830 54103909 -98433350 + B4A SINE B4 192 273 -19 1 997 208 300 0 77 chr5 54103957 54104022 -98433237 + MIRb SINE MIR 121 180 -88 1 997 21 0 0 0 chr5 54104333 54104354 -98432905 + AT_rich Low_complexity Low_complexity 1 21 0 1 997 986 119 53 0 chr5 54104358 54104509 -98432750 + B2_Mm1t SINE B2 35 193 0 1 997 444 304 95 84 chr5 54104709 54104993 -98432266 - B4A SINE B4 -4 288 2 1 997 240 200 100 0 chr5 54105082 54105132 -98432127 + AluF_3 SINE Alu 147 201 -110 1 997 195 42 0 0 chr5 54105151 54105175 -98432084 + (T)n Simple_repeat Simple_repeat 1 24 0 1 997 717 253 42 31 chr5 54106115 54106307 -98430952 + RMER30 DNA MER1_type 2 195 -7 1 997 463 60 388 19 chr5 54107051 54107154 -98430105 - B2_Mm2 SINE B2 -6 189 49 1 997 1096 90 0 0 chr5 54107155 54107299 -98429960 - B2_Mm2 SINE B2 -50 145 2 1 997 2497 82 3 0 chr5 54108248 54108590 -98428669 + MusHAL1 LINE L1 1370 1712 -1000 1 997 581 0 14 0 chr5 54108835 54108904 -98428355 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1 997 462 79 0 0 chr5 54108915 54108978 -98428281 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 997 4702 63 10 12 chr5 54109054 54109652 -98427607 - L1_Mus2 LINE L1 -4 6562 5966 1 997 8617 136 31 11 chr5 54109652 54111555 -98425704 - L1Md_F LINE L1 -3392 2494 155 1 997 353 319 80 27 chr5 54112030 54112217 -98425042 + MLT1A0 LTR MaLR 162 358 -7 1 997 24 0 0 0 chr5 54112388 54112412 -98424847 + AT_rich Low_complexity Low_complexity 1 24 0 1 997 594 285 0 87 chr5 54112652 54112755 -98424504 + B3 SINE B2 2 90 -126 1 997 5014 36 7 2 chr5 54112755 54113343 -98423916 + L1Md_F3 LINE L1 5994 6584 0 1 997 594 285 0 87 chr5 54113343 54113412 -98423847 + B3 SINE B2 91 159 -57 1 997 401 270 233 0 chr5 54113443 54113602 -98423657 + B3A SINE B2 3 198 0 1 997 180 158 0 0 chr5 54114678 54114716 -98422543 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1 997 406 326 81 28 chr5 54114989 54115346 -98421913 - L1MD2 LINE L1 -412 5947 5572 1 997 276 281 39 68 chr5 54116977 54117080 -98420179 - MER58A DNA MER1_type -124 100 1 2 997 416 256 177 115 chr5 54117096 54117480 -98419779 + MLT1A1 LTR MaLR 1 408 0 2 997 193 335 140 30 chr5 54117654 54117925 -98419334 + L2a LINE L2 3126 3426 0 2 997 253 250 0 0 chr5 54118130 54118182 -98419077 - B1_Mus2 SINE Alu -95 52 1 2 997 200 45 40 120 chr5 54118525 54118575 -98418684 + (ACATG)n Simple_repeat Simple_repeat 5 50 0 2 997 225 94 0 0 chr5 54119229 54119261 -98417998 + (T)n Simple_repeat Simple_repeat 1 32 0 2 997 509 325 139 13 chr5 54119323 54119632 -98417627 - ORR1E LTR MaLR -3 356 9 2 997 1431 294 168 31 chr5 54119641 54120283 -98416976 - MTE-int LTR MaLR -53 1527 798 2 997 418 216 41 49 chr5 54120376 54120498 -98416761 + B3A SINE B2 9 129 -69 2 997 864 261 105 17 chr5 54120633 54120871 -98416388 - MTEb LTR MaLR -118 261 3 2 997 311 212 53 34 chr5 54121809 54121906 -98415353 - MLT1A0 LTR MaLR -260 114 20 2 997 1060 191 73 30 chr5 54122224 54122553 -98414706 + RLTR15 LTR ERVK 1 343 -16 2 997 513 0 0 0 chr5 54122846 54122903 -98414356 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 997 970 61 0 0 chr5 54122912 54123043 -98414216 - B2_Mm2 SINE B2 -64 131 1 2 997 615 319 120 18 chr5 54124591 54124933 -98412326 - L1MC1 LINE L1 -20 6313 5937 2 997 425 253 0 0 chr5 54125033 54125124 -98412135 - RSINE1 SINE B4 -62 103 13 2 997 438 20 0 0 chr5 54126506 54126557 -98410702 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 997 389 304 51 23 chr5 54127840 54128015 -98409244 + MIR SINE MIR 1 180 -82 2 997 453 105 37 19 chr5 54128184 54128291 -98408968 + (TCTCTG)n Simple_repeat Simple_repeat 6 114 0 2 997 406 215 113 100 chr5 54128295 54128445 -98408814 - B3 SINE B2 -37 179 28 2 997 271 357 28 14 chr5 54128935 54129077 -98408182 + MLT1J1 LTR MaLR 23 166 -278 2 997 322 276 0 75 chr5 54129484 54129578 -98407681 + MLT2C1 LTR ERVL 469 555 -8 2 124 19298 104 61 21 chr5 54129808 54132775 -98404484 - L1Md_F2 LINE L1 -15 6567 3244 2 998 279 183 139 47 chr5 54132775 54132861 -98404398 + PB1 SINE Alu 1 94 -33 2 998 19298 104 61 21 chr5 54132861 54133568 -98403691 - L1Md_F2 LINE L1 -3339 3243 2452 2 998 287 273 11 11 chr5 54133568 54133657 -98403602 + PB1D10 SINE Alu 27 115 -2 2 998 19298 104 61 21 chr5 54133657 54135285 -98401974 - L1Md_F2 LINE L1 -15 2451 624 2 998 228 67 0 0 chr5 54135325 54135355 -98401904 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 998 435 52 0 0 chr5 54135355 54135413 -98401846 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 998 378 0 0 0 chr5 54136368 54136410 -98400849 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 998 252 0 0 0 chr5 54136410 54136437 -98400822 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 998 925 265 5 0 chr5 54136540 54136751 -98400508 + B3 SINE B2 5 216 0 2 998 267 308 224 20 chr5 54138022 54138277 -98398982 + MLT1G1 LTR MaLR 110 416 -163 2 998 540 273 52 37 chr5 54138901 54139104 -98398155 - ORR1E LTR MaLR -136 234 32 2 998 36287 44 1 3 chr5 54139223 54144643 -98392616 + L1Md_T LINE L1 84 5589 -297 2 998 8635 28 2 1 chr5 54144643 54145638 -98391621 + L1Md_T LINE L1 5590 6585 0 2 998 248 213 33 0 chr5 54145741 54145802 -98391457 + RMER20B LTR ERVK 243 305 -322 2 998 777 129 21 7 chr5 54146117 54146258 -98391001 + URR1A DNA MER1_type 79 221 -5 2 998 249 334 8 8 chr5 54146481 54146627 -98390632 + MIRb SINE MIR 1 146 -116 2 998 280 263 0 38 chr5 54147374 54147453 -98389806 - B4A SINE B4 -21 271 196 2 998 993 214 15 0 chr5 54147528 54147729 -98389530 - B3 SINE B2 -7 209 6 2 998 230 302 0 16 chr5 54147746 54147810 -98389449 - B3A SINE B2 -114 84 22 2 998 725 304 62 27 chr5 54148777 54148954 -98388305 - B4A SINE B4 -23 269 80 2 998 189 0 0 0 chr5 54148954 54148975 -98388284 + (CTG)n Simple_repeat Simple_repeat 2 22 0 2 998 1139 117 0 6 chr5 54148977 54149158 -98388101 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 998 725 304 62 27 chr5 54149158 54149237 -98388022 - B4A SINE B4 -213 79 1 2 998 1177 271 106 18 chr5 54149238 54149456 -98387803 + MER82 DNA MER2_type 166 400 -253 2 998 408 20 0 0 chr5 54149456 54149505 -98387754 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 998 1177 271 106 18 chr5 54149505 54149729 -98387530 + MER82 DNA MER2_type 401 647 -6 2 998 3990 63 40 6 chr5 54149822 54150348 -98386911 + L1Md_F2 LINE L1 6039 6582 0 2 998 45 0 0 0 chr5 54150348 54150393 -98386866 + AT_rich Low_complexity Low_complexity 1 45 0 2 998 273 218 40 8 chr5 54150558 54150683 -98386576 + GA-rich Low_complexity Low_complexity 1 129 0 2 998 444 283 88 29 chr5 54150793 54150980 -98386279 + MTD LTR MaLR 10 179 -200 2 998 263 265 237 22 chr5 54150987 54151126 -98386133 - MTD LTR MaLR -27 392 224 2 998 462 114 0 0 chr5 54151129 54151199 -98386060 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 2 998 500 242 90 69 chr5 54153013 54153302 -98383957 + RMER10A LTR ERVL 1 295 -147 2 998 279 0 0 0 chr5 54153374 54153405 -98383854 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 998 198 0 0 0 chr5 54153651 54153673 -98383586 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2 998 266 232 9 0 chr5 54153679 54153741 -98383518 + B4A SINE B4 2 65 -227 2 998 380 263 24 95 chr5 54153756 54153882 -98383377 + B4 SINE B4 176 292 0 2 998 342 0 0 0 chr5 54155129 54155167 -98382092 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 998 414 0 0 0 chr5 54155608 54155654 -98381605 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 998 229 237 123 92 chr5 54155728 54155923 -98381336 - MLT1C LTR MaLR -194 273 73 2 998 339 271 56 63 chr5 54155930 54156219 -98381040 + L1M4 LINE L1 2891 3215 -2931 2 998 186 133 0 0 chr5 54156236 54156266 -98380993 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 998 1191 49 0 0 chr5 54156362 54156504 -98380755 + B1_Mus1 SINE Alu 1 142 -6 2 998 342 269 311 32 chr5 54157572 54157782 -98379477 - MLT1A0 LTR MaLR -23 342 96 2 998 1193 269 131 0 chr5 54159081 54159416 -98377843 - MTE2a LTR MaLR 0 379 1 2 998 240 317 55 39 chr5 54159858 54159986 -98377273 - ORR1E LTR MaLR -210 149 20 2 998 26 0 0 0 chr5 54160197 54160223 -98377036 + AT_rich Low_complexity Low_complexity 1 26 0 2 998 3818 52 2 0 chr5 54160230 54160691 -98376568 - L1_Mus1 LINE L1 -1 6566 6105 2 998 633 245 4 128 chr5 54160893 54161127 -98376132 + RMER5 LTR ERV1 13 217 -317 2 998 1548 148 11 25 chr5 54161172 54161449 -98375810 + ORR1B2 LTR MaLR 95 367 0 2 998 1092 261 16 29 chr5 54161449 54161759 -98375500 + RMER5 LTR ERV1 229 534 0 2 998 238 365 18 49 chr5 54162234 54162398 -98374861 + MER5B DNA MER1_type 17 175 -3 2 998 628 264 49 58 chr5 54162818 54163099 -98374160 + MTD LTR MaLR 6 283 -136 2 998 475 268 71 0 chr5 54163138 54163265 -98373994 + MTD LTR MaLR 270 405 -14 2 998 3573 186 58 9 chr5 54163468 54164137 -98373122 + RMER1B Other Other 365 1066 0 2 998 2691 139 5 0 chr5 54164534 54164937 -98372322 + L1VL4 LINE L1 193 597 -5705 2 998 1090 97 42 0 chr5 54164959 54165124 -98372135 + L1Md_A LINE L1 416 587 -6137 2 998 24647 22 1 1 chr5 54165105 54168645 -98368614 + L1Md_T LINE L1 2052 5586 -297 2 998 8605 26 0 0 chr5 54168645 54169641 -98367618 + L1Md_T LINE L1 5587 6582 0 2 998 8082 70 31 7 chr5 54169641 54170857 -98366402 + MusHAL1 LINE L1 56 1300 -1412 2 998 7107 115 99 36 chr5 54170859 54172484 -98364775 + Lx2 LINE L1 5259 6997 0 2 998 753 315 68 17 chr5 54172605 54172957 -98364302 - Charlie7 DNA MER1_type -286 2326 1957 2 998 236 362 52 16 chr5 54173014 54173205 -98364054 - Charlie7 DNA MER1_type -649 1963 1766 2 998 263 271 16 16 chr5 54173222 54173346 -98363913 + (CAGTG)n Simple_repeat Simple_repeat 4 127 0 2 998 2636 98 30 7 chr5 54173396 54173827 -98363432 - L1_Mus3 LINE L1 -975 5661 5219 2 998 7264 66 5 4 chr5 54173832 54174865 -98362394 + L1_Mus3 LINE L1 5651 6638 0 2 998 876 310 65 128 chr5 54174869 54175100 -98362159 + Lx8 LINE L1 6569 6810 -663 2 998 1569 241 35 22 chr5 54175100 54175469 -98361790 + ORR1D1 LTR MaLR 1 374 0 2 998 876 310 65 128 chr5 54175469 54175595 -98361664 + Lx8 LINE L1 6811 6945 -528 2 998 450 0 0 0 chr5 54175595 54175645 -98361614 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 998 876 310 65 128 chr5 54175645 54175683 -98361576 + Lx8 LINE L1 6946 6946 -527 2 998 375 23 0 0 chr5 54175683 54175727 -98361532 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 998 876 310 65 128 chr5 54175727 54176070 -98361189 + Lx8 LINE L1 6946 7262 -211 2 998 191 265 106 24 chr5 54177080 54177165 -98360094 - MIR3 SINE MIR -5 203 112 2 998 351 345 35 28 chr5 54177658 54177801 -98359458 - ID_B1 SINE B4 -1 223 80 2 998 21 0 0 0 chr5 54178418 54178439 -98358820 + AT_rich Low_complexity Low_complexity 1 21 0 2 998 227 167 42 0 chr5 54178483 54178531 -98358728 + A-rich Low_complexity Low_complexity 2 51 0 2 998 1181 243 128 44 chr5 54179259 54179642 -98357617 + MTD LTR MaLR 3 417 -2 2 998 189 0 0 0 chr5 54180227 54180248 -98357011 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2 998 865 319 28 13 chr5 54180464 54180781 -98356478 - MLT1A0 LTR MaLR 0 365 44 2 998 186 43 0 0 chr5 54180801 54180824 -98356435 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 2 998 696 245 44 44 chr5 54180832 54180990 -98356269 - RSINE1 SINE B4 0 165 8 2 998 3060 30 0 8 chr5 54181354 54181721 -98355538 + L1Md_F2 LINE L1 6218 6581 -1 2 998 418 292 54 27 chr5 54182060 54182208 -98355051 + MLT1B LTR MaLR 211 362 -28 2 998 342 315 92 1 chr5 54183068 54183205 -98354054 - MIR SINE MIR -52 216 66 2 998 21 0 0 0 chr5 54183743 54183764 -98353495 + AT_rich Low_complexity Low_complexity 1 21 0 2 998 1017 313 20 31 chr5 54183768 54184276 -98352983 + Lx6 LINE L1 130 631 -7097 2 998 6484 154 42 52 chr5 54184320 54185584 -98351675 + Lx6 LINE L1 1763 3008 -2872 2 998 371 65 0 31 chr5 54185584 54185648 -98351611 + (CAGAGA)n Simple_repeat Simple_repeat 3 64 0 2 998 6484 154 42 52 chr5 54185648 54185828 -98351431 + Lx6 LINE L1 3009 3193 -2687 2 998 2101 158 5 141 chr5 54185819 54185926 -98351333 + Lx6 LINE L1 4420 4510 -1367 2 998 1149 69 0 12 chr5 54185926 54186088 -98351171 + L1_Mus1 LINE L1 6408 6567 0 2 998 2101 158 5 141 chr5 54186088 54186130 -98351129 + Lx6 LINE L1 4511 4514 -1363 2 998 915 138 17 6 chr5 54186130 54186305 -98350954 + Lx LINE L1 6478 6654 0 2 998 2737 108 7 203 chr5 54186305 54187080 -98350179 + Lx6 LINE L1 5997 6341 -241 2 998 814 54 15 30 chr5 54187080 54187214 -98350045 + L1Md_F2 LINE L1 6447 6578 -4 2 998 2315 155 13 372 chr5 54187214 54187616 -98349643 + Lx6 LINE L1 4933 5316 -564 2 998 1288 55 0 0 chr5 54187616 54187781 -98349478 - L1_Mus2 LINE L1 0 6566 6402 3 998 2315 155 13 372 chr5 54187781 54187796 -98349463 + Lx6 LINE L1 5317 5317 -563 2 998 273 39 0 56 chr5 54187796 54187850 -98349409 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 998 1091 80 0 0 chr5 54187850 54187988 -98349271 - B1_Mm SINE Alu -9 138 1 3 998 7740 191 30 152 chr5 54187988 54188070 -98349189 + Lx6 LINE L1 5317 5400 -2060 2 998 2083 159 58 32 chr5 54188070 54188447 -98348812 - ORR1B1 LTR MaLR 0 394 8 3 998 7740 191 30 152 chr5 54188447 54190299 -98346960 + Lx6 LINE L1 5401 7315 -145 2 998 2081 185 104 31 chr5 54190302 54190820 -98346439 + RLTR31_Mm LTR ERVK 6 561 0 3 998 2034 92 81 21 chr5 54190826 54191158 -98346101 - RLTR15 LTR ERVK 0 359 8 3 998 726 184 21 0 chr5 54191158 54191299 -98345960 + Lx6 LINE L1 7313 7456 -4 2 998 397 271 44 6 chr5 54191453 54191569 -98345690 + MTB_Mm LTR MaLR 1 130 -277 3 998 252 59 0 0 chr5 54191569 54191603 -98345656 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 998 397 314 208 41 chr5 54191603 54191800 -98345459 + MTB_Mm LTR MaLR 131 375 -44 3 998 348 174 139 30 chr5 54191853 54191954 -98345305 - L1MA5 LINE L1 -48 6252 6141 3 998 1233 225 4 22 chr5 54191961 54192229 -98345030 + Lx6 LINE L1 7024 7286 -174 3 998 222 194 0 0 chr5 54192244 54192280 -98344979 + polypyrimidine Low_complexity Low_complexity 3 38 0 3 998 230 193 0 0 chr5 54192301 54192358 -98344901 + Lx6 LINE L1 7380 7436 -24 3 998 279 317 45 51 chr5 54192547 54192703 -98344556 + MIRb SINE MIR 48 205 -63 3 998 22 0 0 0 chr5 54193367 54193389 -98343870 + AT_rich Low_complexity Low_complexity 1 22 0 3 998 617 260 94 24 chr5 54193650 54193910 -98343349 + MLT2C2 LTR ERVL 6 308 -156 3 998 1480 198 3 81 chr5 54193910 54194267 -98342992 - ORR1A4 LTR MaLR 0 329 1 3 998 617 214 99 43 chr5 54194267 54194284 -98342975 + MLT2C2 LTR ERVL 309 325 -139 3 998 180 0 0 0 chr5 54195566 54195586 -98341673 + (A)n Simple_repeat Simple_repeat 1 20 0 3 998 2401 121 63 0 chr5 54197491 54197854 -98339405 - ORR1B1 LTR MaLR -8 386 1 3 998 213 307 13 26 chr5 54198250 54198327 -98338932 + L2c LINE L2 3285 3360 -27 3 998 266 322 40 47 chr5 54199257 54199407 -98337852 + MER5A1 DNA MER1_type 6 154 -12 3 998 211 282 40 40 chr5 54199690 54199764 -98337495 + L2c LINE L2 3294 3367 -20 3 998 230 219 0 0 chr5 54199973 54200014 -98337245 + URR1B DNA MER1_type 42 82 -143 3 998 900 80 240 0 chr5 54200014 54200164 -98337095 + B2_Mm2 SINE B2 2 187 -8 3 998 872 143 26 0 chr5 54200179 54200333 -98336926 + URR1B DNA MER1_type 68 225 0 3 998 334 234 75 68 chr5 54200333 54200360 -98336899 - CYRA11_Mm Unknown Y-chromosome -443 174 147 3 998 432 0 0 0 chr5 54200610 54200658 -98336601 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 998 314 242 89 32 chr5 54201598 54201756 -98335503 - L1MD2 LINE L1 -425 5934 5768 3 998 430 236 47 25 chr5 54201787 54202005 -98335254 - L1MCc LINE L1 -3236 3705 3489 3 998 1136 278 100 29 chr5 54202094 54202475 -98334784 + MTD LTR MaLR 1 408 -11 3 998 302 342 35 17 chr5 54203116 54203232 -98334027 - L1MCc LINE L1 -6007 416 299 3 998 2762 231 7 34 chr5 54203232 54204095 -98333164 - Lx7 LINE L1 -1733 5963 5127 3 998 3920 269 61 21 chr5 54204093 54204748 -98332511 + Lx7 LINE L1 5987 6674 -1022 3 998 1742 151 18 153 chr5 54204748 54205185 -98332074 - ORR1C1 LTR MaLR 0 378 1 3 998 3920 269 61 21 chr5 54205185 54205773 -98331486 + Lx7 LINE L1 6675 7280 -416 3 998 593 200 101 69 chr5 54205953 54206141 -98331118 + B2_Mm2 SINE B2 2 195 0 3 998 310 237 75 0 chr5 54206189 54206282 -98330977 - L1MCc LINE L1 -6174 249 150 3 998 383 269 126 26 chr5 54206827 54207018 -98330241 - L1MEg LINE L1 -2430 3716 3507 3 998 885 284 132 34 chr5 54207052 54207862 -98329397 - L1MC2 LINE L1 -28 6316 5407 3 998 241 256 28 49 chr5 54208014 54208130 -98329129 - L1MEg LINE L1 -4651 1591 1473 3 998 216 0 0 0 chr5 54208130 54208154 -98329105 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 998 241 256 28 49 chr5 54208154 54208181 -98329078 - L1MEg LINE L1 -4770 1472 1451 3 998 243 226 38 0 chr5 54208332 54208385 -98328874 - B2_Mm2 SINE B2 -125 70 16 3 998 318 26 0 0 chr5 54208486 54208525 -98328734 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 998 492 18 0 0 chr5 54208525 54208581 -98328678 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 998 342 0 0 0 chr5 54209300 54209338 -98327921 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 998 32 57 0 0 chr5 54210125 54210178 -98327081 + AT_rich Low_complexity Low_complexity 1 53 0 3 998 653 270 33 9 chr5 54210381 54210555 -98326704 - B3A SINE B2 -1 215 36 3 998 255 343 27 18 chr5 54211447 54211557 -98325702 + L2c LINE L2 3254 3364 -23 3 998 249 108 0 0 chr5 54211759 54211796 -98325463 + (CAT)n Simple_repeat Simple_repeat 2 38 0 3 998 770 184 80 28 chr5 54212007 54212220 -98325039 + Lx9 LINE L1 7294 7517 -127 3 998 233 219 51 51 chr5 54212224 54212402 -98324857 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 998 30 27 0 0 chr5 54212446 54212483 -98324776 + AT_rich Low_complexity Low_complexity 1 37 0 3 998 666 136 43 12 chr5 54212501 54212665 -98324594 + Lx9 LINE L1 7475 7643 -1 3 998 1510 269 125 38 chr5 54212812 54213515 -98323744 + Charlie1a DNA MER1_type 556 1319 -136 3 998 643 266 140 22 chr5 54213569 54214018 -98323241 - L1MB3 LINE L1 -72 6111 5610 3 998 233 323 133 15 chr5 54214044 54214179 -98323080 + Charlie1a DNA MER1_type 1305 1455 0 3 998 216 296 163 0 chr5 54214313 54214411 -98322848 + L3 LINE CR1 4123 4236 -253 3 998 267 232 14 0 chr5 54216169 54216238 -98321021 - ID2 SINE ID -9 74 5 3 998 206 132 0 73 chr5 54216365 54216406 -98320853 + (CAGG)n Simple_repeat Simple_repeat 2 39 0 3 998 288 0 0 0 chr5 54217674 54217706 -98319553 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 3 998 1697 80 50 0 chr5 54217791 54218029 -98319230 - MT2B2 LTR ERVL -334 250 1 3 998 555 313 50 43 chr5 54218139 54218419 -98318840 - B4A SINE B4 -7 285 4 3 998 315 268 91 24 chr5 54218684 54218759 -98318500 - L1MC5 LINE L1 -747 7214 7140 3 998 746 277 51 0 chr5 54218759 54218954 -98318305 - B3 SINE B2 -10 206 2 3 998 315 268 91 24 chr5 54218954 54219088 -98318171 - L1MC5 LINE L1 -822 7139 6992 3 998 729 265 24 102 chr5 54219516 54219722 -98317537 + B3A SINE B2 9 198 0 3 998 198 0 0 0 chr5 54220467 54220489 -98316770 + (A)n Simple_repeat Simple_repeat 1 22 0 3 998 182 128 26 0 chr5 54220925 54220964 -98316295 + (CACAA)n Simple_repeat Simple_repeat 3 42 0 3 998 255 31 0 0 chr5 54220979 54221011 -98316248 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 998 786 280 7 2 chr5 54221389 54221554 -98315705 + B3 SINE B2 3 165 -33 3 998 330 26 0 0 chr5 54221554 54221593 -98315666 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 998 766 305 10 50 chr5 54221593 54221627 -98315632 + B3A SINE B2 166 194 -4 3 998 1617 231 11 58 chr5 54222541 54222923 -98314336 - ORR1D1 LTR MaLR -10 364 1 3 998 264 330 16 25 chr5 54223324 54223445 -98313814 - LTR79 LTR ERVL -1 526 407 3 998 328 242 131 0 chr5 54223628 54223727 -98313532 + MLT1A1 LTR MaLR 1 112 -296 3 998 226 286 0 16 chr5 54223809 54223873 -98313386 + MLT1A1 LTR MaLR 291 353 -55 3 998 689 181 64 21 chr5 54223890 54224031 -98313228 + B1F2 SINE Alu 3 149 0 3 998 23 0 0 0 chr5 54224063 54224086 -98313173 + AT_rich Low_complexity Low_complexity 1 23 0 3 998 26 0 0 0 chr5 54224976 54225002 -98312257 + AT_rich Low_complexity Low_complexity 1 26 0 3 998 1812 165 3 65 chr5 54225171 54225522 -98311737 - ORR1A4 LTR MaLR 0 329 1 3 998 223 263 36 56 chr5 54225917 54226030 -98311229 - MIR SINE MIR -98 110 4 3 998 1102 206 145 7 chr5 54226738 54227021 -98310238 - ORR1D2 LTR MaLR -48 322 1 3 998 247 203 109 0 chr5 54228117 54228181 -98309078 - Lx9 LINE L1 -502 7142 7072 3 998 735 291 46 37 chr5 54228185 54228535 -98308724 + Lx9 LINE L1 7129 7481 -163 3 998 894 147 99 6 chr5 54229753 54229924 -98307335 + B2_Mm2 SINE B2 1 187 -8 3 998 3606 75 14 8 chr5 54229933 54230430 -98306829 + L1_Mus3 LINE L1 6133 6632 -6 3 998 1150 62 14 0 chr5 54230437 54230582 -98306677 + B1_Mus2 SINE Alu 1 147 0 3 998 180 0 0 0 chr5 54230591 54230611 -98306648 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 998 228 283 0 0 chr5 54231937 54231990 -98305269 + GA-rich Low_complexity Low_complexity 4 56 0 3 998 749 218 66 5 chr5 54232300 54232498 -98304761 - Lx8 LINE L1 -706 6767 6558 3 998 285 51 0 0 chr5 54233498 54233537 -98303722 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 998 219 218 0 0 chr5 54233671 54233726 -98303533 + GA-rich Low_complexity Low_complexity 4 58 0 3 998 4238 38 0 0 chr5 54233756 54234256 -98303003 - L1Md_F2 LINE L1 -10 6572 6073 3 998 14266 87 6 11 chr5 54234256 54236991 -98300268 - L1Md_A LINE L1 -2688 3195 479 3 998 416 311 83 22 chr5 54237781 54238093 -98299166 - L1ME3A LINE L1 -321 5852 5522 3 998 225 0 0 0 chr5 54238096 54238121 -98299138 + (CTG)n Simple_repeat Simple_repeat 2 26 0 3 998 696 107 0 0 chr5 54238121 54238224 -98299035 + (TCC)n Simple_repeat Simple_repeat 3 105 0 3 998 226 200 0 20 chr5 54238414 54238465 -98298794 - L1M4 LINE L1 -861 5285 5236 3 998 565 298 40 81 chr5 54238736 54238959 -98298300 - B3A SINE B2 -2 214 1 3 998 1195 61 0 0 chr5 54240574 54240721 -98296538 - B1_Mus2 SINE Alu 0 147 1 3 998 552 282 7 14 chr5 54241528 54241672 -98295587 - ID_B1 SINE B4 -5 219 77 3 998 361 145 61 73 chr5 54241816 54241828 -98295431 - ID4 SINE ID -1 82 2 3 998 384 143 71 0 chr5 54241828 54241898 -98295361 - ID SINE ID -148 76 2 3 998 192 378 51 22 chr5 54242084 54242222 -98295037 + MIRb SINE MIR 81 222 -46 3 998 47 19 0 0 chr5 54242793 54242847 -98294412 + AT_rich Low_complexity Low_complexity 1 54 0 3 998 22 56 0 0 chr5 54243071 54243107 -98294152 + AT_rich Low_complexity Low_complexity 1 36 0 3 998 21 57 0 0 chr5 54243388 54243423 -98293836 + AT_rich Low_complexity Low_complexity 1 35 0 3 998 487 213 217 12 chr5 54243423 54243589 -98293670 - B3 SINE B2 -15 201 2 3 998 721 218 186 12 chr5 54244469 54244641 -98292618 + B3 SINE B2 1 202 -14 3 998 23 33 0 0 chr5 54244807 54244837 -98292422 + AT_rich Low_complexity Low_complexity 1 30 0 3 998 21 0 0 0 chr5 54246319 54246340 -98290919 + AT_rich Low_complexity Low_complexity 1 21 0 3 998 290 309 32 39 chr5 54247553 54247708 -98289551 + Lx9 LINE L1 6564 6717 -927 3 998 501 319 0 22 chr5 54248283 54248421 -98288838 + ID_B1 SINE B4 84 218 -6 4 998 389 204 306 14 chr5 54248732 54248876 -98288383 - B3A SINE B2 -8 190 5 4 998 297 339 75 30 chr5 54249222 54249356 -98287903 - MER106B DNA MER1_type -917 142 3 4 998 414 0 0 0 chr5 54249631 54249677 -98287582 + (TATG)n Simple_repeat Simple_repeat 4 49 0 4 998 522 150 130 34 chr5 54249679 54249814 -98287445 - B2_Mm2 SINE B2 -38 160 3 4 998 210 118 0 0 chr5 54251049 54251083 -98286176 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 4 998 26 0 0 0 chr5 54251476 54251502 -98285757 + AT_rich Low_complexity Low_complexity 1 26 0 4 998 1551 26 5 0 chr5 54251517 54251708 -98285551 - L1Md_F2 LINE L1 -2 6580 6389 4 998 705 273 56 39 chr5 54251971 54252257 -98285002 + B4A SINE B4 2 292 0 4 998 35 24 0 0 chr5 54252891 54252933 -98284326 + AT_rich Low_complexity Low_complexity 1 42 0 4 998 465 267 110 16 chr5 54252981 54253236 -98284023 - L1MB1 LINE L1 -121 6047 5769 4 998 22 80 0 0 chr5 54253380 54253430 -98283829 + AT_rich Low_complexity Low_complexity 1 50 0 4 998 855 171 73 32 chr5 54253435 54253683 -98283576 + L1_Mur3 LINE L1 4171 4428 -1452 4 998 2245 242 49 62 chr5 54253684 54254468 -98282791 + Lx7 LINE L1 5534 6311 -1385 4 998 704 282 67 53 chr5 54255427 54255711 -98281548 - B4A SINE B4 -4 288 1 4 998 911 247 91 81 chr5 54255983 54256379 -98280880 - Lx8 LINE L1 -13 7460 7061 4 998 570 290 107 30 chr5 54256533 54257067 -98280192 - L1M4c LINE L1 -5071 1313 739 4 998 314 333 64 45 chr5 54257701 54257921 -98279338 - MLT1D LTR MaLR -15 490 267 4 998 412 309 177 21 chr5 54257943 54258135 -98279124 - MLT1D LTR MaLR -189 316 95 4 998 2090 178 86 6 chr5 54258164 54258666 -98278593 - Lx9 LINE L1 -16 7628 7087 4 998 2958 192 38 3 chr5 54258657 54259269 -98277990 + Lx9 LINE L1 6451 7083 -561 4 998 227 356 55 0 chr5 54259272 54259345 -98277914 - MLT1D LTR MaLR -420 85 9 4 998 189 0 0 0 chr5 54259349 54259370 -98277889 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 998 1134 140 0 0 chr5 54259424 54259610 -98277649 - Lx9 LINE L1 -675 6969 6784 4 998 2229 198 111 14 chr5 54259657 54260236 -98277023 + Lx9 LINE L1 7003 7637 -7 4 998 2507 97 91 3 chr5 54260297 54260661 -98276598 - MTA_Mm LTR MaLR 0 396 1 4 998 195 42 0 0 chr5 54261220 54261244 -98276015 + (T)n Simple_repeat Simple_repeat 1 24 0 4 998 323 202 12 0 chr5 54261328 54261412 -98275847 + CT-rich Low_complexity Low_complexity 1 85 0 4 998 199 73 73 0 chr5 54261547 54261588 -98275671 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 998 1036 216 26 9 chr5 54261595 54261824 -98275435 - Lx7 LINE L1 -345 7351 7119 4 998 339 337 78 34 chr5 54262493 54262699 -98274560 - MIR SINE MIR 0 262 48 4 999 609 263 268 13 chr5 54264337 54264545 -98272714 + B4A SINE B4 2 271 -21 4 999 378 61 0 0 chr5 54264545 54264594 -98272665 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 999 609 263 268 13 chr5 54264594 54264616 -98272643 + B4A SINE B4 272 291 -1 4 999 1665 181 74 57 chr5 54265219 54265623 -98271636 - MTC LTR MaLR -1 420 10 4 999 372 318 96 19 chr5 54266736 54266893 -98270366 + MIRb SINE MIR 13 181 -81 4 999 23 0 0 0 chr5 54267809 54267832 -98269427 + AT_rich Low_complexity Low_complexity 1 23 0 4 999 22 0 0 0 chr5 54267889 54267911 -98269348 + AT_rich Low_complexity Low_complexity 1 22 0 4 999 236 300 194 29 chr5 54268940 54269043 -98268216 - MIRb SINE MIR -135 133 14 4 999 25 31 0 0 chr5 54269490 54269522 -98267737 + AT_rich Low_complexity Low_complexity 1 32 0 4 999 181 369 0 0 chr5 54270613 54270678 -98266581 - MIR SINE MIR -141 121 57 4 999 208 222 36 18 chr5 54271774 54271829 -98265430 + L2a LINE L2 3198 3253 -173 4 999 336 298 114 40 chr5 54272653 54272828 -98264431 - MIRb SINE MIR -67 201 14 4 999 325 306 235 24 chr5 54272865 54273116 -98264143 + L3 LINE CR1 3531 3834 -655 4 999 2342 216 12 30 chr5 54275209 54275801 -98261458 + Lx7 LINE L1 4717 5297 -583 4 999 1181 68 0 13 chr5 54275801 54275951 -98261308 + B1_Mus1 SINE Alu 1 148 0 4 999 1322 256 101 31 chr5 54275952 54276539 -98260720 + Lx7 LINE L1 5566 6187 -1509 4 999 28 48 0 0 chr5 54276566 54276608 -98260651 + AT_rich Low_complexity Low_complexity 1 42 0 4 999 982 221 5 14 chr5 54276650 54276861 -98260398 + Lx7 LINE L1 6175 6383 -1313 4 999 449 151 43 0 chr5 54276868 54276961 -98260298 - RMER1A Other Other -2 1028 932 4 999 302 182 0 0 chr5 54276961 54277016 -98260243 - RMER1A Other Other -202 828 774 4 999 549 302 53 98 chr5 54277016 54277413 -98259846 - Lx8 LINE L1 -247 7226 6848 4 999 701 310 56 14 chr5 54277531 54277891 -98259368 + L1M5 LINE L1 3975 4349 -1797 4 999 231 333 0 0 chr5 54278042 54278102 -98259157 + MIRm SINE MIR 83 142 -134 4 999 210 254 0 0 chr5 54279144 54279203 -98258056 + T-rich Low_complexity Low_complexity 1 59 0 4 999 365 199 46 0 chr5 54279659 54279810 -98257449 + (CA)n Simple_repeat Simple_repeat 1 158 0 4 999 358 247 12 12 chr5 54280840 54280922 -98256337 + ID4 SINE ID 2 83 0 4 999 207 69 0 0 chr5 54281329 54281358 -98255901 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 999 308 254 103 26 chr5 54281814 54282088 -98255171 - L1M5 LINE L1 -2872 3274 2953 4 999 3235 71 15 2 chr5 54282088 54282483 -98254776 + MTB LTR MaLR 1 400 0 4 999 289 275 162 34 chr5 54282483 54282565 -98254694 - L1M5 LINE L1 -3194 2952 2872 4 999 2212 276 113 32 chr5 54282571 54283387 -98253872 + Lx7 LINE L1 6427 7308 -388 4 999 33 43 0 0 chr5 54283499 54283546 -98253713 + AT_rich Low_complexity Low_complexity 1 47 0 4 999 916 166 14 0 chr5 54283546 54283685 -98253574 + B1_Mur2 SINE Alu 1 141 -8 4 999 420 263 39 13 chr5 54283695 54283849 -98253410 - L1MEb LINE L1 -3313 3693 3536 4 999 390 341 55 97 chr5 54283875 54284112 -98253147 + B4 SINE B4 42 268 -24 4 999 430 0 71 0 chr5 54284113 54284183 -98253076 + (CA)n Simple_repeat Simple_repeat 2 76 0 4 999 1236 48 0 14 chr5 54284672 54284819 -98252440 + B1_Mm SINE Alu 2 146 -1 4 999 306 67 0 0 chr5 54284820 54284865 -98252394 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 4 999 239 269 15 0 chr5 54285064 54285131 -98252128 - L1MEb LINE L1 -5274 2060 1993 4 999 7822 148 53 36 chr5 54285400 54287075 -98250184 - Lx4B LINE L1 -4 7054 5333 4 999 282 257 34 59 chr5 54287079 54287237 -98250022 - L1MEb LINE L1 -5101 1895 1761 4 999 30 69 0 0 chr5 54287377 54287435 -98249824 + AT_rich Low_complexity Low_complexity 1 58 0 4 999 510 246 76 69 chr5 54289551 54289682 -98247577 + RSINE1 SINE B4 11 142 -23 4 999 411 252 244 0 chr5 54289800 54289923 -98247336 - B3A SINE B2 -45 153 1 4 999 21 0 0 0 chr5 54290626 54290647 -98246612 + AT_rich Low_complexity Low_complexity 1 21 0 4 999 211 317 155 40 chr5 54291733 54291881 -98245378 + MIR SINE MIR 30 194 -74 4 999 674 24 0 12 chr5 54293313 54293398 -98243861 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 4 999 657 300 183 3 chr5 54293576 54293877 -98243382 - Lx8 LINE L1 -152 7321 6967 4 999 23 0 0 0 chr5 54295008 54295031 -98242228 + AT_rich Low_complexity Low_complexity 1 23 0 4 999 580 277 34 7 chr5 54295247 54295396 -98241863 - ID_B1 SINE B4 -5 219 67 4 999 282 280 39 20 chr5 54296361 54296463 -98240796 + MIRc SINE MIR 160 263 -5 4 999 245 343 277 38 chr5 54298181 54298500 -98238759 + L2c LINE L2 2989 3387 0 4 999 349 281 97 100 chr5 54298653 54299012 -98238247 - L1ME2 LINE L1 0 6162 5803 4 999 333 322 40 28 chr5 54299010 54299186 -98238073 - L1ME2 LINE L1 -755 5689 5512 4 999 25 0 0 0 chr5 54299444 54299469 -98237790 + AT_rich Low_complexity Low_complexity 1 25 0 4 999 1459 289 104 25 chr5 54299541 54300491 -98236768 - L1ME2 LINE L1 -976 5170 4146 4 999 211 262 0 0 chr5 54300813 54300855 -98236404 + polypurine Low_complexity Low_complexity 1 42 0 4 999 186 43 0 0 chr5 54301158 54301181 -98236078 + (A)n Simple_repeat Simple_repeat 1 23 0 4 999 3068 76 8 2 chr5 54301182 54301579 -98235680 - L1_Mus4 LINE L1 -169 6467 6069 4 999 19850 73 9 2 chr5 54301579 54304831 -98232428 - L1VL4 LINE L1 -63 3496 222 4 999 211 318 14 128 chr5 54305067 54305215 -98232044 + MIRc SINE MIR 96 226 -42 4 999 248 275 8 121 chr5 54305307 54305431 -98231828 - RMER4B LTR ERVK -417 168 59 4 999 300 305 9 0 chr5 54305616 54305721 -98231538 - MER103 DNA DNA -13 153 48 4 999 885 317 25 61 chr5 54305791 54306158 -98231101 + MLT1A LTR MaLR 24 627 0 4 999 1088 306 101 30 chr5 54306217 54306789 -98230470 + L1MEc LINE L1 202 814 -5586 4 999 670 236 167 0 chr5 54306973 54307147 -98230112 - B3 SINE B2 -13 203 1 4 999 226 288 47 20 chr5 54307163 54307312 -98229947 + L1MEc LINE L1 1018 1170 -5230 4 999 834 175 287 6 chr5 54307392 54307559 -98229700 - B3 SINE B2 -1 215 2 4 999 1412 276 82 31 chr5 54307560 54308169 -98229090 + L1MB1 LINE L1 5515 6154 -14 4 999 370 302 126 10 chr5 54308184 54308392 -98228867 + L1MEc LINE L1 3252 3482 -2837 4 999 328 274 14 0 chr5 54308581 54308654 -98228605 + MER76 LTR ERVL 32 105 -586 4 999 628 298 124 42 chr5 54308671 54309081 -98228178 + MER76 LTR ERVL 205 648 -43 4 999 349 213 10 77 chr5 54309087 54309211 -98228048 - L1MC4 LINE L1 -1480 4734 4621 4 999 352 204 70 140 chr5 54309300 54309414 -98227845 - PB1 SINE Alu -2 125 13 4 999 495 294 72 30 chr5 54309485 54309748 -98227511 - L1MC4 LINE L1 -1787 4427 4154 4 999 401 252 28 75 chr5 54309842 54309949 -98227310 - B1F SINE Alu -23 126 25 4 999 351 257 78 50 chr5 54309964 54310144 -98227115 - L1MC4 LINE L1 -2130 4084 3900 4 999 417 284 90 36 chr5 54310153 54310433 -98226826 + MLT1A1 LTR MaLR 1 403 -5 4 999 483 261 74 95 chr5 54310447 54310785 -98226474 - L1MC5 LINE L1 -893 7068 6738 4 999 321 299 69 31 chr5 54311344 54311503 -98225756 - L1MC4 LINE L1 -4705 1510 1346 4 999 264 254 28 14 chr5 54311601 54311673 -98225586 - ID_B1 SINE B4 -66 158 86 4 999 314 317 70 21 chr5 54311677 54311819 -98225440 - MIRb SINE MIR -113 155 7 4 999 304 324 39 0 chr5 54312038 54312140 -98225119 + MER5B DNA MER1_type 3 108 -70 4 999 216 229 32 16 chr5 54313585 54313647 -98223612 + C-rich Low_complexity Low_complexity 2 64 0 4 999 356 237 242 7 chr5 54313978 54314131 -98223128 + MER5A DNA MER1_type 1 189 0 4 999 260 349 52 15 chr5 54314268 54314402 -98222857 + B1F SINE Alu 3 141 -8 4 999 198 0 0 0 chr5 54314557 54314579 -98222680 + (CAA)n Simple_repeat Simple_repeat 2 23 0 4 999 354 23 0 0 chr5 54314579 54314622 -98222637 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 999 244 232 185 27 chr5 54315116 54315262 -98221997 - L1ME4a LINE L1 -2 6122 5954 5 999 281 355 25 89 chr5 54315308 54315543 -98221716 - LTR52 LTR ERVL -42 379 160 5 999 7786 103 15 7 chr5 54315696 54317280 -98219979 - Lx LINE L1 -1 6653 5054 5 999 281 48 48 0 chr5 54318748 54318790 -98218469 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 999 239 29 0 54 chr5 54319142 54319179 -98218080 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 5 999 604 255 20 14 chr5 54320909 54321056 -98216203 - B1F1 SINE Alu 0 149 2 5 999 390 91 0 0 chr5 54321490 54321545 -98215714 + (TCC)n Simple_repeat Simple_repeat 1 55 0 5 999 837 137 57 0 chr5 54321548 54321672 -98215587 - B1_Mur3 SINE Alu -17 132 2 5 999 197 299 87 67 chr5 54322187 54322291 -98214968 + MIR SINE MIR 34 139 -123 5 999 233 276 121 65 chr5 54322308 54322432 -98214827 + MLT1J2 LTR MaLR 3 133 -315 5 999 206 43 19 132 chr5 54322583 54322636 -98214623 + A-rich Low_complexity Low_complexity 2 48 0 5 999 268 280 29 20 chr5 54322689 54322791 -98214468 + MIR SINE MIR 160 262 0 5 999 1279 303 164 28 chr5 54323534 54324706 -98212553 - L2a LINE L2 -45 3381 1895 5 999 1975 135 154 0 chr5 54325492 54325626 -98211633 + ORR1B2 LTR MaLR 1 151 -216 5 999 423 0 0 0 chr5 54325626 54325673 -98211586 + (TC)n Simple_repeat Simple_repeat 2 48 0 5 999 1975 135 154 0 chr5 54325673 54325856 -98211403 + ORR1B2 LTR MaLR 152 366 -1 5 999 508 306 112 68 chr5 54325972 54326312 -98210947 - MLT1K LTR MaLR -114 481 127 5 999 5739 79 21 22 chr5 54326473 54327235 -98210024 + L1_Mus3 LINE L1 5878 6638 0 5 999 22 80 0 0 chr5 54327390 54327440 -98209819 + AT_rich Low_complexity Low_complexity 1 50 0 5 999 1705 112 0 0 chr5 54328159 54328382 -98208877 - URR1A DNA MER1_type -2 224 2 5 999 231 275 42 42 chr5 54328396 54328468 -98208791 - MLT1H2 LTR MaLR -67 422 351 5 999 572 311 82 21 chr5 54328505 54328748 -98208511 - MLT1H2 LTR MaLR -231 258 1 5 999 924 254 34 14 chr5 54329104 54329312 -98207947 + B3 SINE B2 5 216 0 5 999 222 91 53 35 chr5 54329677 54329734 -98207525 + (TAA)n Simple_repeat Simple_repeat 2 59 0 5 999 369 31 45 30 chr5 54329836 54329903 -98207356 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 5 999 1257 36 0 0 chr5 54329903 54330040 -98207219 - B1_Mm SINE Alu -9 138 2 5 999 316 366 89 79 chr5 54330296 54330587 -98206672 - L1MC LINE L1 -2219 5663 5370 5 999 189 0 0 0 chr5 54331127 54331148 -98206111 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 999 597 284 113 0 chr5 54331393 54331587 -98205672 + MLT1A0 LTR MaLR 150 365 0 5 999 377 253 209 28 chr5 54332228 54332466 -98204793 - MLT1A0 LTR MaLR -11 379 65 5 999 182 235 198 0 chr5 54335127 54335208 -98202051 + MIR SINE MIR 141 237 -25 5 999 297 333 31 49 chr5 54335497 54335721 -98201538 + MLT1C LTR MaLR 190 409 -58 5 999 204 222 0 0 chr5 54336123 54336168 -98201091 + GA-rich Low_complexity Low_complexity 1 45 0 5 999 214 306 60 36 chr5 54336549 54336715 -98200544 - MIRb SINE MIR -66 202 33 5 999 25 51 0 0 chr5 54337193 54337232 -98200027 + AT_rich Low_complexity Low_complexity 1 39 0 5 999 308 288 152 40 chr5 54337584 54337808 -98199451 + LTR33 LTR ERVL 38 286 -229 5 999 225 319 42 14 chr5 54338077 54338220 -98199039 + LTR33 LTR ERVL 358 504 -11 5 999 275 231 35 23 chr5 54338936 54339029 -98198230 + LTR16E1 LTR ERVL 361 535 -3 5 999 229 280 69 53 chr5 54339197 54339377 -98197882 + L2b LINE L2 2977 3184 -242 5 999 185 313 45 0 chr5 54339417 54339484 -98197775 + L2b LINE L2 3272 3341 -46 5 999 527 286 48 71 chr5 54340564 54340858 -98196401 + MER46C DNA MER2_type 11 297 -41 5 999 206 331 134 21 chr5 54341121 54341263 -98195996 + MIRc SINE MIR 80 237 -31 5 999 428 295 0 26 chr5 54342251 54342366 -98194893 - B1F1 SINE Alu -1 148 37 5 999 393 314 156 30 chr5 54342895 54343427 -98193832 + L1MC4 LINE L1 7190 7788 -254 5 999 242 232 172 48 chr5 54343558 54343703 -98193556 + L1MC4 LINE L1 7879 8041 -1 5 999 2062 77 50 7 chr5 54344281 54344580 -98192679 + Lx LINE L1 6343 6654 0 5 999 367 329 38 45 chr5 54345474 54345756 -98191503 + L2a LINE L2 2814 3098 -328 5 999 624 235 22 6 chr5 54346192 54346388 -98190871 + L1MA9 LINE L1 5654 5932 -380 5 999 211 302 10 20 chr5 54346390 54346488 -98190771 + (TG)n Simple_repeat Simple_repeat 2 98 0 5 999 3192 51 38 2 chr5 54346491 54346884 -98190375 + MTB_Mm LTR MaLR 1 407 0 5 999 422 68 0 0 chr5 54347163 54347222 -98190037 - B1_Mus2 SINE Alu -9 138 80 5 999 230 209 171 23 chr5 54347345 54347433 -98189826 + B4A SINE B4 107 207 -85 5 999 300 172 0 0 chr5 54347494 54347552 -98189707 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 999 692 211 84 36 chr5 54347664 54347915 -98189344 - ORSL-2b DNA Tip100 -35 473 211 5 999 198 118 0 0 chr5 54348938 54348972 -98188287 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 999 268 279 84 28 chr5 54348999 54349106 -98188153 + PB1D9 SINE Alu 7 119 -1 5 999 874 191 75 21 chr5 54349849 54350036 -98187223 - URR1B DNA MER1_type 0 225 29 5 999 1207 61 0 0 chr5 54350197 54350345 -98186914 - B1_Mus1 SINE Alu 0 148 1 5 999 435 144 20 10 chr5 54350613 54350711 -98186548 + CT-rich Low_complexity Low_complexity 2 100 0 5 999 907 142 43 63 chr5 54350747 54351222 -98186037 - RMER17C LTR ERVK -5 405 1 5 999 257 291 0 76 chr5 54351714 54351833 -98185426 + MIR SINE MIR 42 151 -111 5 999 460 267 50 71 chr5 54351885 54352148 -98185111 + MTEb LTR MaLR 100 379 0 5 999 388 293 108 12 chr5 54353856 54354022 -98183237 + MIR SINE MIR 45 226 -36 5 999 273 319 100 70 chr5 54354244 54354473 -98182786 + B4A SINE B4 1 236 -56 5 999 696 45 0 0 chr5 54354488 54354576 -98182683 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 5 999 180 111 0 0 chr5 54354603 54354630 -98182629 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 999 880 194 0 0 chr5 54354642 54354786 -98182473 - B1_Mur2 SINE Alu -1 148 5 5 999 1173 75 0 0 chr5 54354836 54354983 -98182276 - B1_Mm SINE Alu 0 147 1 5 999 586 312 32 0 chr5 54355208 54355362 -98181897 + B3A SINE B2 6 164 -34 5 999 2255 101 9 15 chr5 54355509 54355840 -98181419 - ORR1A4 LTR MaLR 0 329 1 5 999 630 282 47 134 chr5 54356038 54356337 -98180922 - B4 SINE B4 0 292 20 5 999 322 263 26 0 chr5 54357185 54357261 -98179998 - ID4_ SINE ID -3 80 3 5 999 331 226 106 12 chr5 54357307 54357392 -98179867 - B1F2 SINE Alu -34 115 23 5 999 397 231 13 0 chr5 54357887 54357965 -98179294 - ID4_ SINE ID -4 79 1 5 999 335 355 48 12 chr5 54358358 54358526 -98178733 - MER58A DNA MER1_type -25 199 26 5 999 429 20 0 0 chr5 54359064 54359114 -98178145 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 999 288 53 0 0 chr5 54359166 54359204 -98178055 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 999 435 19 0 0 chr5 54359281 54359333 -98177926 + (TATG)n Simple_repeat Simple_repeat 1 52 0 5 999 251 244 151 0 chr5 54359725 54359811 -98177448 - L1ME1 LINE L1 -150 6029 5931 5 999 564 268 40 22 chr5 54360164 54360553 -98176706 + MLT1D LTR MaLR 44 475 -30 5 999 201 315 93 33 chr5 54360754 54360905 -98176354 + L2 LINE L2 2712 2871 -548 5 999 483 18 0 0 chr5 54361034 54361090 -98176169 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 999 249 83 0 0 chr5 54362871 54362907 -98174352 + (CAA)n Simple_repeat Simple_repeat 2 37 0 5 999 243 0 0 0 chr5 54362966 54362993 -98174266 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 999 279 0 0 0 chr5 54363448 54363479 -98173780 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 999 434 330 16 11 chr5 54364393 54364577 -98172682 + MER2 DNA MER2_type 105 289 -56 5 999 8848 10 7 0 chr5 54364701 54366050 -98171209 - L1Md_A LINE L1 0 6582 5221 5 999 12902 14 0 1 chr5 54366046 54367501 -98169758 + L1Md_A LINE L1 3780 5233 -650 5 999 231 381 11 0 chr5 54367684 54367865 -98169394 + L2 LINE L2 1903 2085 -1334 5 999 888 364 117 11 chr5 54368405 54368944 -98168315 + MER45C DNA Tip100 1 596 -357 5 999 183 42 0 0 chr5 54368978 54369002 -98168257 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 999 608 231 6 0 chr5 54369363 54369519 -98167740 + CT-rich Low_complexity Low_complexity 2 158 0 5 999 685 183 0 51 chr5 54369540 54369678 -98167581 - B1_Mur4 SINE Alu -9 141 11 5 999 788 302 46 94 chr5 54369683 54370077 -98167182 + MTEa LTR MaLR 1 375 -4 5 999 429 226 0 0 chr5 54370465 54370549 -98166710 + L1Md_F LINE L1 370 453 -6066 5 999 337 27 0 0 chr5 54370544 54370581 -98166678 + L1Md_F2 LINE L1 5549 5585 -298 5 999 8505 39 0 1 chr5 54370582 54371576 -98165683 + L1Md_F2 LINE L1 5587 6579 -3 5 999 7780 73 1 9 chr5 54371576 54372860 -98164399 + L1_Mus1 LINE L1 5294 6566 -1 5 999 195 42 0 0 chr5 54373254 54373278 -98163981 + (TA)n Simple_repeat Simple_repeat 2 25 0 5 999 240 247 92 23 chr5 54373748 54373835 -98163424 - MLT1L LTR MaLR -3 607 515 5 999 898 292 53 83 chr5 54374268 54374735 -98162524 - L1MB3 LINE L1 -12 6171 5719 5 999 762 317 92 13 chr5 54375354 54375658 -98161601 - MER2 DNA MER2_type -1 344 17 5 999 1540 22 61 0 chr5 54375819 54376000 -98161259 - B2_Mm1a SINE B2 -1 192 1 5 999 295 279 98 62 chr5 54376080 54376226 -98161033 - L2b LINE L2 -319 3056 2906 5 999 381 314 66 0 chr5 54376333 54376454 -98160805 - B1F2 SINE Alu -20 129 1 5 999 1306 175 8 134 chr5 54376460 54376817 -98160442 - MTD LTR MaLR -107 312 1 5 999 330 26 0 0 chr5 54377202 54377241 -98160018 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 999 313 192 110 0 chr5 54377652 54377725 -98159534 + MLT1C LTR MaLR 1 81 -386 6 999 207 0 0 0 chr5 54377766 54377789 -98159470 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 6 999 1160 144 21 0 chr5 54377807 54377995 -98159264 + B2_Mm2 SINE B2 1 192 -3 6 999 314 282 66 28 chr5 54378263 54378369 -98158890 + B4 SINE B4 1 110 -182 6 999 246 246 0 17 chr5 54378369 54378427 -98158832 + B4 SINE B4 234 290 -2 6 999 258 231 123 37 chr5 54378517 54378598 -98158661 + MLT1C LTR MaLR 298 385 -82 6 999 295 244 0 65 chr5 54378658 54378750 -98158509 + Ricksha_c DNA MuDR 356 441 -1607 6 999 621 309 84 27 chr5 54378871 54379134 -98158125 + Ricksha_c DNA MuDR 608 885 -1163 6 999 489 340 85 36 chr5 54379552 54379915 -98157344 + L2 LINE L2 2299 2679 -740 6 999 578 358 97 28 chr5 54380325 54380788 -98156471 + ORR1D-int LTR MaLR 775 1269 -101 6 999 1734 219 23 51 chr5 54380791 54381186 -98156073 - Lx5 LINE L1 -3 7047 6664 6 999 1044 116 55 6 chr5 54381183 54381348 -98155911 - Lx4B LINE L1 -1180 5878 5706 6 999 2987 121 37 35 chr5 54381348 54381797 -98155462 + RLTR20A LTR ERVK 1 442 -99 6 999 1236 69 0 0 chr5 54381797 54382058 -98155201 + (TG)n Simple_repeat Simple_repeat 1 261 0 6 999 2987 121 37 35 chr5 54382058 54382146 -98155113 + RLTR20A LTR ERVK 443 541 0 6 999 2749 111 20 34 chr5 54382146 54382586 -98154673 - Lx4B LINE L1 -172 5705 5272 6 999 247 268 42 0 chr5 54382586 54382657 -98154602 + ORR1D-int LTR MaLR 1409 1482 -98 6 999 1721 170 111 24 chr5 54382668 54383048 -98154211 - MTC LTR MaLR -8 413 1 6 999 501 276 86 6 chr5 54383078 54383253 -98154006 + ORR1E LTR MaLR 1 189 -170 6 999 1382 82 16 0 chr5 54383447 54383629 -98153630 - B2_Mm2 SINE B2 -9 186 2 6 999 1390 89 16 5 chr5 54383639 54383831 -98153428 - B2_Mm2 SINE B2 -1 194 1 6 999 642 229 114 5 chr5 54384444 54384637 -98152622 - B3 SINE B2 0 216 3 6 999 1621 260 93 29 chr5 54384637 54385345 -98151914 - L1M3 LINE L1 -1141 4999 4245 6 999 292 242 15 0 chr5 54385380 54385446 -98151813 - ID4_ SINE ID -15 68 2 6 999 215 152 22 0 chr5 54385572 54385618 -98151641 + (TCTCTG)n Simple_repeat Simple_repeat 6 52 0 6 999 292 317 133 46 chr5 54389097 54389292 -98147967 + MIRm SINE MIR 63 274 -2 6 999 35 54 0 0 chr5 54389725 54389781 -98147478 + GC_rich Low_complexity Low_complexity 1 56 0 6 999 198 0 0 0 chr5 54389887 54389909 -98147350 + (T)n Simple_repeat Simple_repeat 1 22 0 6 124 3718 57 2 14 chr5 54394417 54394902 -98142357 + L1Md_F2 LINE L1 6104 6582 0 6 1000 833 209 118 43 chr5 54397942 54398222 -98139037 + L1MA9 LINE L1 5677 5977 -335 6 1000 260 294 59 32 chr5 54398231 54398417 -98138842 + L1MA9 LINE L1 6112 6302 -10 6 1000 1154 62 7 0 chr5 54398431 54398576 -98138683 - B1_Mus2 SINE Alu -1 146 1 6 1000 303 208 39 0 chr5 54398650 54398727 -98138532 - ID2 SINE ID -3 80 1 6 1000 181 204 0 93 chr5 54399135 54399189 -98138070 - MIRb SINE MIR -53 215 167 6 1000 186 324 14 29 chr5 54399767 54399837 -98137422 + MIR SINE MIR 187 255 -7 6 1000 664 288 85 53 chr5 54400030 54400312 -98136947 + B4 SINE B4 2 292 0 6 1000 23 0 0 0 chr5 54400753 54400776 -98136483 + AT_rich Low_complexity Low_complexity 1 23 0 6 1000 269 299 39 0 chr5 54400828 54400905 -98136354 - RSINE1 SINE B4 -66 99 20 6 1000 21 0 0 0 chr5 54400936 54400957 -98136302 + AT_rich Low_complexity Low_complexity 1 21 0 6 1000 453 66 0 0 chr5 54400958 54401019 -98136240 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1000 604 239 49 0 chr5 54401150 54401292 -98135967 - B1_Mur2 SINE Alu 0 149 1 6 1000 675 191 69 0 chr5 54401312 54401443 -98135816 - B1_Mur2 SINE Alu -1 148 9 6 1000 505 275 49 0 chr5 54401615 54401757 -98135502 + B4A SINE B4 71 219 -73 6 1000 731 50 16 16 chr5 54401789 54401912 -98135347 + (CA)n Simple_repeat Simple_repeat 2 124 0 6 1000 333 62 0 0 chr5 54401912 54401960 -98135299 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1000 215 401 25 34 chr5 54401960 54402164 -98135095 - L2 LINE L2 -410 3009 2808 6 1000 541 263 144 30 chr5 54402216 54402486 -98134773 - L1MB2 LINE L1 -47 6124 5824 6 1000 408 20 0 0 chr5 54402515 54402564 -98134695 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 6 1000 1388 95 5 0 chr5 54402629 54402818 -98134441 - B2_Mm1t SINE B2 -2 191 2 6 1000 264 244 44 11 chr5 54402818 54402909 -98134350 - L1MB2 LINE L1 -477 5694 5601 6 1000 216 67 0 0 chr5 54403633 54403663 -98133596 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1000 633 187 147 42 chr5 54403720 54403910 -98133349 - B3 SINE B2 -6 210 1 6 1000 509 223 93 93 chr5 54404917 54405110 -98132149 + B3A SINE B2 1 193 -5 6 1000 455 286 0 56 chr5 54405584 54405710 -98131549 - PB1 SINE Alu -8 119 1 6 1000 259 308 27 27 chr5 54405729 54405839 -98131420 - PB1D7 SINE Alu -7 113 4 6 1000 998 117 7 0 chr5 54406474 54406619 -98130640 - B1_Mur4 SINE Alu -2 148 3 6 1000 329 255 0 109 chr5 54406517 54406636 -98130623 - MT2B LTR ERVL -344 257 152 6 1000 30 69 0 0 chr5 54406636 54406694 -98130565 + AT_rich Low_complexity Low_complexity 1 58 0 6 1000 540 30 0 0 chr5 54407266 54407332 -98129927 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1000 264 324 119 60 chr5 54407501 54407770 -98129489 + ORR1E LTR MaLR 1 285 -74 6 1000 345 278 14 62 chr5 54408206 54408417 -98128842 - L1MCc LINE L1 -4891 1532 1332 6 1000 261 338 7 21 chr5 54408702 54408844 -98128415 + Ricksha_a DNA MuDR 249 388 -793 6 1000 339 143 75 38 chr5 54409123 54409203 -98128056 + Ricksha_a DNA MuDR 623 705 -476 6 1000 294 156 0 0 chr5 54409411 54409475 -98127784 + CT-rich Low_complexity Low_complexity 3 66 0 6 1000 344 236 101 0 chr5 54409475 54409564 -98127695 - PB1D10 SINE Alu 0 117 20 6 1000 23 0 0 0 chr5 54410422 54410445 -98126814 + AT_rich Low_complexity Low_complexity 1 23 0 6 1000 269 321 184 45 chr5 54411809 54412119 -98125140 + MLT1A0 LTR MaLR 1 353 -12 6 1000 766 339 66 43 chr5 54412346 54412486 -98124773 - Lx9 LINE L1 0 7473 7329 6 1000 198 0 0 0 chr5 54412486 54412508 -98124751 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1000 270 0 0 0 chr5 54412508 54412537 -98124722 + (TC)n Simple_repeat Simple_repeat 2 31 0 6 1000 951 303 49 55 chr5 54412537 54412742 -98124517 - Lx9 LINE L1 -195 7449 7125 6 1000 3135 44 3 3 chr5 54412742 54413128 -98124131 - L1Md_F2 LINE L1 0 6582 6197 6 1000 951 302 48 55 chr5 54413128 54413504 -98123755 - Lx9 LINE L1 -389 7255 6876 6 1000 954 212 69 0 chr5 54413706 54413895 -98123364 - B3 SINE B2 -10 206 5 6 1000 439 291 115 23 chr5 54413968 54414098 -98123161 - B1F1 SINE Alu -2 147 6 6 1000 268 295 102 115 chr5 54413974 54414131 -98123128 - ID_B1 SINE B4 -8 216 62 6 1000 222 240 0 20 chr5 54414297 54414348 -98122911 - ID4_ SINE ID -32 51 2 6 1000 180 0 0 0 chr5 54414631 54414651 -98122608 + (TCCA)n Simple_repeat Simple_repeat 4 23 0 6 1000 276 100 0 0 chr5 54414810 54414850 -98122409 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1000 211 306 122 0 chr5 54416051 54416149 -98121110 - MIR SINE MIR -51 211 102 6 1000 218 116 23 0 chr5 54417421 54417464 -98119795 + (AGGGGG)n Simple_repeat Simple_repeat 1 44 0 6 1000 21 0 0 0 chr5 54417707 54417728 -98119531 + AT_rich Low_complexity Low_complexity 1 21 0 6 1000 1242 251 65 17 chr5 54418093 54418446 -98118813 - ORR1D2 LTR MaLR 0 370 1 6 1000 184 97 39 65 chr5 54418475 54418552 -98118707 + (TTTAA)n Simple_repeat Simple_repeat 4 78 0 6 1000 291 323 14 76 chr5 54418567 54418711 -98118548 - MLT2C1 LTR ERVL -51 346 212 6 1000 1154 283 108 14 chr5 54418765 54419358 -98117901 - ERVL-B4-int LTR ERVL -735 4979 4334 6 1000 1375 312 79 16 chr5 54419383 54420067 -98117192 - ERVL-B4-int LTR ERVL -1512 4202 3476 6 1000 217 232 0 0 chr5 54420075 54420131 -98117128 + T-rich Low_complexity Low_complexity 5 60 0 6 1000 801 148 37 0 chr5 54420132 54420267 -98116992 - B1_Mur4 SINE Alu -1 149 10 6 1000 867 274 96 11 chr5 54420270 54420647 -98116612 - ERVL-B4-int LTR ERVL -2246 3421 3013 6 1000 377 261 36 22 chr5 54420730 54420867 -98116392 - ERVL-B4-int LTR ERVL -3120 2594 2456 6 1000 269 253 44 0 chr5 54420869 54420960 -98116299 - ERVL-B4-int LTR ERVL -3971 1743 1649 6 1000 632 333 96 9 chr5 54420999 54421550 -98115709 - ERVL-B4-int LTR ERVL -4148 1566 968 6 1000 1173 282 99 19 chr5 54422069 54422657 -98114602 - ERVL-B4-int LTR ERVL -5079 635 1 6 1000 722 320 90 17 chr5 54422664 54423010 -98114249 - MLT2C1 LTR ERVL -26 371 1 6 1000 756 267 22 14 chr5 54423213 54423422 -98113837 - B3A SINE B2 -1 215 2 6 1000 253 286 0 20 chr5 54423659 54423759 -98113500 + A-rich Low_complexity Low_complexity 2 99 0 6 1000 420 87 171 0 chr5 54423842 54423938 -98113321 - B2_Mm2 SINE B2 -14 181 47 6 1000 1319 85 11 0 chr5 54423996 54424173 -98113086 - B2_Mm1t SINE B2 -14 179 1 6 1000 270 0 0 0 chr5 54424387 54424417 -98112842 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 6 1000 234 0 0 0 chr5 54425122 54425148 -98112111 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 6 1000 816 266 14 0 chr5 54426046 54426260 -98110999 + ID_B1 SINE B4 2 218 -6 6 1000 28 0 0 0 chr5 54429569 54429597 -98107662 + AT_rich Low_complexity Low_complexity 1 28 0 6 1000 597 14 0 0 chr5 54429751 54429821 -98107438 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 6 1000 216 355 79 16 chr5 54429890 54430016 -98107243 - L2 LINE L2 -2116 1303 1170 6 1000 207 69 0 0 chr5 54430277 54430306 -98106953 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 6 1000 370 253 46 0 chr5 54430417 54430504 -98106755 + B1F2 SINE Alu 45 135 -14 6 1000 656 11 43 0 chr5 54430504 54430597 -98106662 + (GA)n Simple_repeat Simple_repeat 1 97 0 6 1000 617 36 24 0 chr5 54430622 54430705 -98106554 + (TTCC)n Simple_repeat Simple_repeat 2 86 0 6 1000 221 360 0 11 chr5 54430705 54430792 -98106467 - L2a LINE L2 0 3426 3341 6 1000 256 250 0 30 chr5 54431099 54431165 -98106094 + C-rich Low_complexity Low_complexity 2 65 0 6 1000 414 256 82 8 chr5 54431165 54431287 -98105972 - ID_B1 SINE B4 -9 215 85 6 1000 275 342 13 0 chr5 54432477 54432553 -98104706 + ID4 SINE ID 6 82 -1 6 1000 184 378 51 0 chr5 54432657 54432755 -98104504 + MIRb SINE MIR 3 105 -163 6 1000 243 318 184 34 chr5 54433107 54433286 -98103973 - MIRb SINE MIR -57 211 6 6 1000 353 372 43 14 chr5 54434230 54434440 -98102819 - LTR83 LTR ERVL -29 751 536 6 1000 233 253 37 37 chr5 54435485 54435567 -98101692 - ID2 SINE ID 0 83 2 6 1000 760 261 152 12 chr5 54435664 54436064 -98101195 + L1MC1 LINE L1 5372 5827 -506 6 1000 369 0 0 0 chr5 54436098 54436139 -98101120 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1000 545 290 104 19 chr5 54436150 54436410 -98100849 - B4A SINE B4 -1 291 10 7 1000 519 266 51 38 chr5 54436464 54436699 -98100560 + L1MC1 LINE L1 5945 6182 -151 6 1000 294 289 105 0 chr5 54437723 54437837 -98099422 - L2a LINE L2 -4 3422 3297 7 1000 401 332 59 81 chr5 54438681 54439033 -98098226 - ORR1E LTR MaLR -13 366 9 7 1000 180 303 29 57 chr5 54439781 54439851 -98097408 + L2b LINE L2 3302 3369 -6 7 1000 242 299 0 0 chr5 54439886 54439963 -98097296 + RMER12B LTR ERVK 867 943 -461 7 1000 339 78 20 0 chr5 54440445 54440496 -98096763 - U2 snRNA snRNA -132 56 5 7 1000 3168 200 33 3 chr5 54440499 54441112 -98096147 + Lx5 LINE L1 6413 7043 -7 7 1000 263 272 88 88 chr5 54441143 54441256 -98096003 - RSINE1 SINE B4 -1 164 52 7 1000 180 359 119 30 chr5 54441481 54441817 -98095442 + L2b LINE L2 2717 3082 -337 7 1000 2275 47 0 0 chr5 54441880 54442156 -98095103 + L1Md_T LINE L1 6307 6582 0 7 1000 290 324 79 26 chr5 54442368 54442558 -98094701 - MLT1A1 LTR MaLR -208 200 1 7 1000 203 328 35 0 chr5 54443060 54443118 -98094141 + L2b LINE L2 3287 3346 -29 7 1000 293 279 139 0 chr5 54443321 54443443 -98093816 - B1F2 SINE Alu -8 141 3 7 1000 223 306 48 58 chr5 54444976 54445080 -98092179 - PB1D10 SINE Alu 0 117 15 7 1000 588 297 133 39 chr5 54445207 54445515 -98091744 - MLT1H2 LTR MaLR -88 401 65 7 1000 306 0 0 0 chr5 54445544 54445578 -98091681 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 7 1000 876 144 7 46 chr5 54445579 54445732 -98091527 - B1_Mur3 SINE Alu -2 147 1 7 1000 1501 184 183 15 chr5 54445736 54445937 -98091322 - Lx9 LINE L1 -2 7642 7419 7 1000 389 82 33 0 chr5 54445937 54445998 -98091261 + (TATG)n Simple_repeat Simple_repeat 4 66 0 7 1000 1501 184 183 15 chr5 54445998 54446277 -98090982 - Lx9 LINE L1 -226 7418 7082 7 1000 728 188 36 0 chr5 54446268 54446406 -98090853 + Lx9 LINE L1 6942 7084 -560 7 1000 2022 251 182 29 chr5 54446426 54447326 -98089933 - Lx8 LINE L1 -235 7238 6202 7 1000 248 292 128 79 chr5 54447475 54447605 -98089654 + MER33 DNA MER1_type 4 133 -191 7 1000 845 282 41 7 chr5 54447605 54447876 -98089383 + B4A SINE B4 1 280 -12 7 1000 308 254 148 25 chr5 54447876 54448050 -98089209 + MER33 DNA MER1_type 134 323 -1 7 1000 213 294 76 92 chr5 54448372 54448503 -98088756 - L2a LINE L2 0 3426 3298 7 1000 473 331 83 57 chr5 54448654 54448990 -98088269 - ORR1E LTR MaLR -8 351 7 7 1000 295 192 238 25 chr5 54449174 54449254 -98088005 - MLT1F2 LTR MaLR -286 274 168 7 1000 641 253 58 8 chr5 54449302 54449488 -98087771 - B3 SINE B2 -2 193 2 7 1000 227 355 86 31 chr5 54449488 54449646 -98087613 - MLT1F2 LTR MaLR -393 167 1 7 1000 1065 45 0 0 chr5 54449858 54449992 -98087267 + B2_Mm2 SINE B2 1 134 -61 7 1000 181 336 93 0 chr5 54451360 54451467 -98085792 + MER5A DNA MER1_type 72 188 -1 7 1000 396 196 158 43 chr5 54452083 54452222 -98085037 + Lx8 LINE L1 7261 7415 -58 7 1000 1166 68 0 0 chr5 54452319 54452466 -98084793 + B1_Mus2 SINE Alu 1 147 0 7 1000 216 0 0 0 chr5 54452466 54452490 -98084769 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1000 1925 153 11 8 chr5 54452580 54452936 -98084323 - RLTR15 LTR ERVK 0 359 3 7 1000 417 284 34 8 chr5 54453735 54453852 -98083407 - MER94 DNA AcHobo 0 134 15 7 1000 549 357 117 40 chr5 54454106 54454328 -98082931 - B4 SINE B4 -4 288 50 7 1000 298 232 65 101 chr5 54455650 54455669 -98081590 + CYRA11_Mm Unknown Y-chromosome 150 280 -334 7 1000 717 83 0 77 chr5 54455669 54455786 -98081473 - URR1B DNA MER1_type 0 225 118 7 1000 520 327 12 24 chr5 54456161 54456327 -98080932 - RSINE1 SINE B4 0 165 2 7 1000 2993 62 26 0 chr5 54457022 54457412 -98079847 + MTB LTR MaLR 1 400 0 7 1000 428 273 181 17 chr5 54458811 54459098 -98078161 - L1MEc LINE L1 -4578 1837 1504 7 1000 367 325 8 81 chr5 54459334 54459458 -98077801 - B3A SINE B2 -22 176 62 7 1000 449 323 33 30 chr5 54459623 54459923 -98077336 - L1MEc LINE L1 -5582 818 518 7 1000 318 261 14 36 chr5 54460185 54460324 -98076935 - L1MEc LINE L1 -6211 189 54 7 1000 586 255 20 7 chr5 54460674 54460824 -98076435 - Tigger7 DNA MER2_type -10 2481 2330 7 1000 1191 48 0 13 chr5 54461130 54461279 -98075980 + B1_Mus2 SINE Alu 1 147 0 7 1000 180 0 0 0 chr5 54461279 54461299 -98075960 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1000 405 194 125 40 chr5 54461649 54461775 -98075484 + B1_Mus1 SINE Alu 3 119 -1 7 1000 457 250 42 25 chr5 54462301 54462420 -98074839 - RSINE1 SINE B4 -15 150 30 7 1000 32 57 0 0 chr5 54462562 54462615 -98074644 + AT_rich Low_complexity Low_complexity 1 53 0 7 1000 594 0 0 0 chr5 54463315 54463381 -98073878 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 1000 380 325 99 32 chr5 54464196 54464479 -98072780 - Lx8 LINE L1 -1134 6339 6038 7 1000 28 0 0 0 chr5 54465364 54465392 -98071867 + AT_rich Low_complexity Low_complexity 1 28 0 7 1000 252 230 66 65 chr5 54465705 54465760 -98071499 + MIR SINE MIR 80 134 -142 7 1000 3322 28 2 34 chr5 54465760 54466169 -98071090 + MTA_Mm LTR MaLR 1 396 0 7 1000 252 218 84 60 chr5 54466169 54466210 -98071049 + MIR SINE MIR 128 170 -92 7 1000 27 0 0 0 chr5 54466742 54466769 -98070490 + AT_rich Low_complexity Low_complexity 1 27 0 7 1000 762 123 77 35 chr5 54466782 54466925 -98070334 + B1_Mur4 SINE Alu 2 150 0 7 1000 2307 46 13 29 chr5 54466940 54467251 -98070008 + L1Md_F3 LINE L1 6276 6581 -3 7 1000 566 242 26 13 chr5 54467587 54467742 -98069517 - Tigger7 DNA MER2_type -76 2415 2259 7 1000 370 151 36 26 chr5 54467818 54467942 -98069317 + RMER17B LTR ERVK 353 509 -397 7 1000 373 298 97 21 chr5 54467958 54468102 -98069157 - Tigger7 DNA MER2_type -2336 155 1 7 1000 464 319 126 69 chr5 54470237 54470758 -98066501 + RMER20B LTR ERVK 97 619 -23 7 1000 422 103 0 13 chr5 54471124 54471203 -98066056 + (CA)n Simple_repeat Simple_repeat 2 79 0 7 1000 247 170 0 0 chr5 54471621 54471668 -98065591 + Lx8 LINE L1 7427 7473 0 7 1000 781 246 18 143 chr5 54471802 54471840 -98065419 + B3 SINE B2 2 39 -177 7 1000 1415 65 5 5 chr5 54471840 54472025 -98065234 + B2_Mm1t SINE B2 1 185 -8 7 1000 781 246 18 143 chr5 54472025 54472209 -98065050 + B3 SINE B2 40 196 -20 7 1000 226 184 41 0 chr5 54473750 54473799 -98063460 + (CTTG)n Simple_repeat Simple_repeat 1 51 0 7 1000 216 67 0 0 chr5 54474625 54474655 -98062604 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1000 378 0 0 0 chr5 54474814 54474856 -98062403 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1000 426 39 0 0 chr5 54474856 54474907 -98062352 + (GA)n Simple_repeat Simple_repeat 2 53 0 7 1000 294 262 167 9 chr5 54475308 54475416 -98061843 + B1F1 SINE Alu 17 141 -8 7 1000 250 277 30 54 chr5 54476457 54476625 -98060634 + L1MB3 LINE L1 6018 6181 -2 7 1000 233 163 0 20 chr5 54477769 54477819 -98059440 + CT-rich Low_complexity Low_complexity 2 50 0 7 1000 244 282 14 14 chr5 54477880 54477952 -98059307 + CT-rich Low_complexity Low_complexity 3 74 0 7 1000 323 355 71 78 chr5 54478057 54478482 -98058777 - L2a LINE L2 -1 3425 3004 7 1000 441 0 0 0 chr5 54478620 54478669 -98058590 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1000 261 0 0 0 chr5 54478669 54478697 -98058562 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1000 661 321 34 26 chr5 54478711 54478980 -98058279 - B4A SINE B4 -20 272 2 7 1000 225 204 0 0 chr5 54479063 54479107 -98058152 + A-rich Low_complexity Low_complexity 1 44 0 7 1000 371 294 18 27 chr5 54479721 54479833 -98057426 + B3A SINE B2 78 188 -10 7 1000 190 259 73 12 chr5 54479852 54479934 -98057325 - L2 LINE L2 -1608 1811 1725 7 1000 337 165 124 45 chr5 54480608 54480697 -98056562 - PB1D10 SINE Alu -8 109 14 7 1000 207 0 0 0 chr5 54481019 54481042 -98056217 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1000 1830 110 11 117 chr5 54481189 54481549 -98055710 - ORR1A3 LTR MaLR 0 326 5 7 1000 355 173 18 0 chr5 54481821 54481931 -98055328 + GA-rich Low_complexity Low_complexity 1 112 0 7 1000 597 234 0 0 chr5 54482654 54482765 -98054494 + B1_Mur1 SINE Alu 2 112 -37 7 1000 24 32 0 0 chr5 54482819 54482850 -98054409 + AT_rich Low_complexity Low_complexity 1 31 0 7 1000 359 345 143 40 chr5 54482970 54483320 -98053939 - L1MC4 LINE L1 -320 7722 7337 7 1000 279 0 0 0 chr5 54483368 54483399 -98053860 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1000 389 233 62 25 chr5 54483401 54483542 -98053717 - ID_B1 SINE B4 -7 217 1 7 1000 264 276 50 66 chr5 54483568 54483750 -98053509 - L1MC4 LINE L1 -762 7280 7102 7 1000 1701 158 90 18 chr5 54485729 54486064 -98051195 - ORR1B2 LTR MaLR -8 359 1 7 1000 612 266 13 13 chr5 54486714 54486870 -98050389 - B3A SINE B2 -42 156 1 7 1000 21 57 0 0 chr5 54488693 54488728 -98048531 + AT_rich Low_complexity Low_complexity 1 35 0 7 1000 391 206 165 10 chr5 54489796 54489899 -98047360 + B1_Mur2 SINE Alu 30 148 -1 7 1000 485 281 86 0 chr5 54490427 54490566 -98046693 + RSINE1 SINE B4 3 153 -12 7 1000 423 0 0 0 chr5 54493155 54493202 -98044057 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1000 456 19 0 0 chr5 54493202 54493254 -98044005 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1000 201 232 18 18 chr5 54494072 54494129 -98043130 + (TATG)n Simple_repeat Simple_repeat 4 60 0 7 1000 216 0 0 0 chr5 54494503 54494527 -98042732 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1000 329 273 192 32 chr5 54495824 54495949 -98041310 + ID_B1 SINE B4 72 216 -8 7 1000 21 71 0 0 chr5 54496337 54496379 -98040880 + AT_rich Low_complexity Low_complexity 1 42 0 7 1000 220 338 131 21 chr5 54497387 54497546 -98039713 - MIRm SINE MIR -85 191 11 7 1000 363 23 0 0 chr5 54499766 54499810 -98037449 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1000 270 296 111 17 chr5 54501332 54501449 -98035810 + LFSINE_Vert SINE SINE 38 165 -294 1 1000 2348 38 0 20 chr5 54502449 54502742 -98034517 - L1Md_F2 LINE L1 0 6582 6296 2 1000 228 135 0 0 chr5 54503219 54503256 -98034003 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1000 224 271 17 0 chr5 54503472 54503531 -98033728 - PB1 SINE Alu -58 69 10 4 1000 639 296 102 28 chr5 54507533 54507787 -98029472 - MLT1E3 LTR MaLR -31 593 321 5 1000 587 320 61 4 chr5 54509013 54509242 -98028017 + B4A SINE B4 5 246 -46 6 1000 386 120 0 13 chr5 54509256 54509332 -98027927 + (CA)n Simple_repeat Simple_repeat 1 75 0 7 1000 3261 67 0 2 chr5 54512735 54513155 -98024104 - L1Md_F2 LINE L1 0 6582 6164 8 1000 1172 151 102 0 chr5 54513429 54513634 -98023625 - URR1A DNA MER1_type 0 226 1 9 1000 222 118 0 0 chr5 54513912 54513946 -98023313 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1 1000 438 150 24 48 chr5 54513946 54514072 -98023187 - RMER17C LTR ERVK -135 275 153 1 1000 294 29 0 0 chr5 54514276 54514311 -98022948 + (TCC)n Simple_repeat Simple_repeat 2 36 0 1 1000 906 283 35 42 chr5 54514351 54514639 -98022620 - B4A SINE B4 -6 286 1 1 1000 294 29 0 0 chr5 54516830 54516865 -98020394 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1000 197 33 33 0 chr5 54516967 54516997 -98020262 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 1 1000 237 283 151 11 chr5 54517154 54517247 -98020012 - L2a LINE L2 -253 3173 3068 1 1000 1152 74 0 0 chr5 54518480 54518713 -98018546 + (GA)n Simple_repeat Simple_repeat 1 233 0 1 1000 3050 274 125 44 chr5 54518714 54520719 -98016540 - L1MA8 LINE L1 -384 5907 3653 1 1000 1156 184 61 9 chr5 54520719 54520933 -98016326 - URR1B DNA MER1_type 0 225 1 1 1000 3050 279 137 46 chr5 54520933 54521825 -98015434 - L1MA8 LINE L1 -2459 3684 2604 1 1000 2426 157 13 20 chr5 54521886 54522283 -98014976 + ORR1B1 LTR MaLR 1 394 0 2 1000 474 65 0 0 chr5 54522359 54522421 -98014838 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1000 234 0 0 0 chr5 54522509 54522535 -98014724 + (TTTTC)n Simple_repeat Simple_repeat 1 26 0 2 1000 788 117 125 0 chr5 54522535 54522663 -98014596 - B1_Mus1 SINE Alu 0 148 5 2 1000 462 156 33 11 chr5 54522850 54522941 -98014318 + MTE2a LTR MaLR 279 371 -8 2 1000 2382 47 6 6 chr5 54523383 54523708 -98013551 - IAPEY2_LTR LTR ERVK 0 357 33 2 1000 535 264 40 7 chr5 54524266 54524415 -98012844 + B3 SINE B2 57 210 -6 2 1000 1399 51 6 0 chr5 54524851 54525026 -98012233 - L1_Mus1 LINE L1 0 6567 6392 2 1000 3861 40 0 0 chr5 54525026 54525482 -98011777 + L1_Mus1 LINE L1 5693 6148 -419 2 1000 267 309 238 8 chr5 54525578 54525813 -98011446 + L1MEf LINE L1 1366 1654 -4546 2 1001 1699 189 67 8 chr5 54526160 54526518 -98010741 - ORR1C2 LTR MaLR -1 383 5 3 1001 2556 173 46 58 chr5 54526518 54526637 -98010622 - ORR1C2-int LTR MaLR -6 1503 1406 3 1001 817 199 188 27 chr5 54526637 54526823 -98010436 + B3 SINE B2 1 216 0 3 1001 2556 173 46 58 chr5 54526823 54527286 -98009973 - ORR1C2-int LTR MaLR -104 1405 928 3 1001 808 19 0 0 chr5 54527303 54527406 -98009853 + LTRIS_Mm LTR ERV1 1 103 -379 3 1001 36228 46 0 3 chr5 54527406 54532904 -98004355 + L1Md_T LINE L1 14 5589 -297 3 1001 8678 28 0 1 chr5 54532904 54533901 -98003358 + L1Md_T LINE L1 5590 6585 0 3 1001 3053 28 3 0 chr5 54533901 54534289 -98002970 + LTRIS_Mm LTR ERV1 94 482 0 3 1001 2929 62 25 0 chr5 54534289 54534657 -98002602 + MuRRS-int LTR ERV1 1 377 -4313 3 1001 7563 41 4 16 chr5 54534654 54535574 -98001685 + MuRRS-int LTR ERV1 574 1482 -3208 3 1001 25646 34 4 18 chr5 54535571 54538618 -97998641 + MuRRS-int LTR ERV1 1686 4690 0 3 1001 4264 11 25 0 chr5 54538618 54539088 -97998171 + LTRIS_Mm LTR ERV1 1 482 0 3 1001 1905 200 105 13 chr5 54539091 54539668 -97997591 - ORR1C2-int LTR MaLR -987 805 141 3 1001 404 264 72 87 chr5 54539943 54540138 -97997121 + RMER2 LTR ERV1 334 525 -42 3 1001 608 199 53 15 chr5 54540190 54540323 -97996936 - ORR1C2-int LTR MaLR -1232 138 1 3 1001 866 201 73 0 chr5 54540330 54540509 -97996750 - ORR1C2 LTR MaLR -13 371 180 3 1001 3690 159 25 43 chr5 54540535 54541293 -97995966 + RLTR25B LTR ERVK 28 771 -257 3 1001 796 183 134 65 chr5 54541508 54541562 -97995697 + RLTR25B LTR ERVK 766 825 -203 3 1001 441 0 0 0 chr5 54541562 54541611 -97995648 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1001 796 183 134 65 chr5 54541611 54541802 -97995457 + RLTR25B LTR ERVK 826 1028 0 3 1001 339 204 26 77 chr5 54541817 54541934 -97995325 - ORR1C2 LTR MaLR -267 111 1 3 1001 983 324 70 20 chr5 54541938 54542436 -97994823 - ORR1E-int LTR MaLR -1057 523 1 3 1001 255 196 120 0 chr5 54542442 54542534 -97994725 - ORR1E LTR MaLR -4 355 253 3 1001 304 265 138 42 chr5 54542658 54542847 -97994412 - Lx7 LINE L1 -17 7679 7473 3 1001 218 167 0 0 chr5 54542878 54542914 -97994345 + (CCCCG)n Simple_repeat Simple_repeat 2 37 0 3 1001 422 204 27 27 chr5 54542918 54543029 -97994230 + Lx9 LINE L1 7381 7491 -153 4 1001 247 262 0 0 chr5 54543054 54543115 -97994144 - Lx7 LINE L1 -374 7322 7262 3 1001 230 260 71 20 chr5 54543123 54543221 -97994038 - ORR1E LTR MaLR -258 126 24 3 1001 2527 226 126 42 chr5 54543347 54544163 -97993096 + Lx9 LINE L1 6732 7616 -28 4 1001 25 0 0 0 chr5 54544166 54544191 -97993068 + AT_rich Low_complexity Low_complexity 1 25 0 4 1001 1223 0 18 23 chr5 54544430 54544601 -97992658 + (TTCTC)n Simple_repeat Simple_repeat 5 174 0 4 1001 537 121 0 0 chr5 54544607 54544690 -97992569 + (TCC)n Simple_repeat Simple_repeat 3 85 0 4 1001 381 219 71 36 chr5 54545801 54545961 -97991298 - ORR1E LTR MaLR -210 160 4 4 1001 311 347 0 0 chr5 54548820 54548915 -97988344 + CT-rich Low_complexity Low_complexity 2 96 0 4 1001 1248 80 0 9 chr5 54549871 54550322 -97986937 + (TG)n Simple_repeat Simple_repeat 1 447 0 4 1001 23 0 0 0 chr5 54552438 54552461 -97984798 + AT_rich Low_complexity Low_complexity 1 23 0 4 1001 413 303 12 77 chr5 54552545 54552562 -97984697 - Lx8 LINE L1 -144 7329 7316 4 1001 204 40 0 0 chr5 54552562 54552587 -97984672 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5 1001 413 303 12 77 chr5 54552587 54552737 -97984522 - Lx8 LINE L1 -158 7315 7173 4 1001 389 283 58 53 chr5 54553210 54553400 -97983859 - B4A SINE B4 0 292 102 5 1001 288 0 0 0 chr5 54553403 54553435 -97983824 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1001 435 267 63 49 chr5 54554026 54554168 -97983091 + RSINE1 SINE B4 22 165 0 5 1001 555 306 60 22 chr5 54555120 54555387 -97981872 + MLT1H LTR MaLR 14 290 -259 5 1001 181 156 0 0 chr5 54556205 54556237 -97981022 + MIRc SINE MIR 125 156 -112 5 1001 363 60 0 0 chr5 54557107 54557157 -97980102 + (TATG)n Simple_repeat Simple_repeat 2 51 0 5 1001 694 185 280 0 chr5 54557160 54557317 -97979942 - B3 SINE B2 -14 202 2 5 1001 842 298 59 4 chr5 54558028 54558267 -97978992 + B4 SINE B4 41 292 0 5 1001 360 111 0 0 chr5 54558272 54558326 -97978933 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1001 183 42 0 0 chr5 54558750 54558774 -97978485 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1001 960 56 0 0 chr5 54558779 54558905 -97978354 - B1_Mm SINE Alu -21 126 1 6 1001 374 304 29 23 chr5 54559094 54559266 -97977993 + MLT1F2 LTR MaLR 388 560 0 6 1001 506 286 14 7 chr5 54559556 54559704 -97977555 - MER58A DNA MER1_type -10 214 66 6 1001 254 322 35 9 chr5 54560185 54560301 -97976958 + L2b LINE L2 3255 3373 -2 6 1001 315 0 0 0 chr5 54560518 54560553 -97976706 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1001 451 71 0 0 chr5 54561343 54561399 -97975860 - L1_Mus4 LINE L1 -600 6036 5981 6 1001 3460 53 0 0 chr5 54561393 54561809 -97975450 + L1_Mus4 LINE L1 6040 6455 -181 6 1001 880 9 0 0 chr5 54561810 54561916 -97975343 + MTA_Mm LTR MaLR 291 396 0 6 1001 201 147 0 0 chr5 54562282 54562316 -97974943 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1001 819 93 17 0 chr5 54562316 54562434 -97974825 - PB1D9 SINE Alu 0 120 1 6 1001 297 0 0 0 chr5 54562971 54563004 -97974255 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1001 423 0 0 0 chr5 54563004 54563050 -97974209 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 1001 276 350 52 15 chr5 54563279 54563546 -97973713 - L1ME3A LINE L1 -258 5915 5639 7 1001 257 211 52 62 chr5 54563784 54563880 -97973379 - L1P5 LINE L1 -708 5448 5354 7 1001 1146 191 5 5 chr5 54563955 54564155 -97973104 - Lx7 LINE L1 -824 6872 6673 7 1001 1658 167 102 34 chr5 54564161 54564346 -97972913 - ORR1C1 LTR MaLR -1 377 168 7 1001 969 128 0 0 chr5 54564346 54564526 -97972733 + (GA)n Simple_repeat Simple_repeat 1 180 0 7 1001 1658 167 102 34 chr5 54564526 54564693 -97972566 - ORR1C1 LTR MaLR -211 167 1 7 1001 7011 192 43 20 chr5 54564693 54565867 -97971392 - ORR1C1-int LTR MaLR 0 1509 284 7 1001 285 29 0 0 chr5 54565867 54565901 -97971358 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 7 1001 7011 192 43 20 chr5 54565901 54566202 -97971057 - ORR1C1-int LTR MaLR -1226 283 1 7 1001 1329 188 115 44 chr5 54566213 54566553 -97970706 - ORR1C1 LTR MaLR -14 364 1 7 1001 1431 156 61 85 chr5 54566553 54566596 -97970663 - Lx6 LINE L1 -799 6661 6626 7 1001 3044 100 8 94 chr5 54566596 54567105 -97970154 + L1_Mus3 LINE L1 6167 6631 -7 7 1001 1431 156 61 85 chr5 54567105 54567356 -97969903 - Lx6 LINE L1 -835 6625 6374 7 1001 526 197 158 8 chr5 54567358 54567491 -97969768 + Lx7 LINE L1 6881 7033 -663 8 1001 487 206 9 29 chr5 54567480 54567585 -97969674 + Lx7 LINE L1 7204 7306 -390 8 1001 213 65 0 0 chr5 54567585 54567616 -97969643 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1001 244 204 69 79 chr5 54567620 54567721 -97969538 + Lx7 LINE L1 7293 7392 -304 8 1001 23 33 0 0 chr5 54567721 54567751 -97969508 + AT_rich Low_complexity Low_complexity 1 30 0 8 1001 489 34 0 0 chr5 54567773 54567832 -97969427 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1001 1320 203 45 54 chr5 54567832 54568145 -97969114 + Lx7 LINE L1 7387 7696 0 8 1001 679 285 64 48 chr5 54568330 54568625 -97968634 - Lx8 LINE L1 -5 7468 7169 8 1001 2056 76 34 120 chr5 54569281 54569639 -97967620 - ORR1A2 LTR MaLR 0 327 1 8 1001 231 224 0 0 chr5 54570043 54570119 -97967140 + (TG)n Simple_repeat Simple_repeat 1 76 0 8 1001 238 200 43 58 chr5 54571062 54571131 -97966128 + MER5A DNA MER1_type 115 182 -7 8 1001 313 360 24 75 chr5 54571369 54571640 -97965619 + MLT1H1 LTR MaLR 1 302 -293 8 1001 300 243 178 0 chr5 54571664 54571771 -97965488 + MLT1H1 LTR MaLR 386 511 -38 8 1001 621 0 0 0 chr5 54573023 54573092 -97964167 + (GAA)n Simple_repeat Simple_repeat 1 69 0 8 1001 185 0 40 0 chr5 54573698 54573723 -97963536 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 9 1001 282 29 0 0 chr5 54574003 54574038 -97963221 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1001 326 321 131 0 chr5 54574274 54574442 -97962817 + MIR SINE MIR 4 193 -69 9 1001 213 39 0 0 chr5 54574712 54574738 -97962521 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1001 424 238 75 19 chr5 54575210 54575317 -97961942 - MTEa LTR MaLR -7 372 260 9 1001 233 300 14 14 chr5 54575534 54575605 -97961654 - MTEa LTR MaLR -267 92 22 9 1001 252 246 0 32 chr5 54575769 54575832 -97961427 - L1MCa LINE L1 -5826 682 622 9 1001 228 316 76 17 chr5 54575882 54576001 -97961258 + MER90a LTR ERV1 471 596 -18 9 1001 222 263 0 0 chr5 54576050 54576107 -97961152 - L3 LINE CR1 -857 3632 3576 9 1001 345 321 44 6 chr5 54576108 54576268 -97960991 + ORR1E LTR MaLR 22 187 -172 9 1001 407 228 177 55 chr5 54577999 54578180 -97959079 - L1MC2 LINE L1 -33 6311 6109 9 1001 1052 196 135 43 chr5 54578264 54578568 -97958691 - IAPEY3_LTR LTR ERVK 0 332 1 1 1001 201 39 0 0 chr5 54578849 54578875 -97958384 + (C)n Simple_repeat Simple_repeat 1 26 0 1 1001 212 0 36 0 chr5 54579739 54579767 -97957492 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1001 3071 71 10 2 chr5 54579781 54580178 -97957081 - MTB LTR MaLR 0 400 1 1 1001 400 309 0 9 chr5 54580334 54580442 -97956817 + PB1D7 SINE Alu 1 107 -13 1 1001 285 267 0 13 chr5 54580465 54580541 -97956718 + PB1D10 SINE Alu 1 75 -42 1 1001 180 0 0 0 chr5 54580928 54580948 -97956311 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1001 330 124 13 18 chr5 54580965 54581030 -97956229 - B2_Mm2 SINE B2 -83 115 46 1 1001 1030 158 53 0 chr5 54581093 54581264 -97955995 - B2_Mm1t SINE B2 -12 181 2 1 1001 1016 244 23 0 chr5 54581348 54581565 -97955694 - ID_B1 SINE B4 0 224 3 1 1001 522 83 0 0 chr5 54581677 54581749 -97955510 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 1 1001 23 0 0 0 chr5 54582544 54582567 -97954692 + AT_rich Low_complexity Low_complexity 1 23 0 1 1001 225 284 0 15 chr5 54582574 54582642 -97954617 - L1MC2 LINE L1 -30 6314 6248 1 1001 559 304 98 4 chr5 54584006 54584250 -97953009 + MLT1C LTR MaLR 182 448 -19 1 1001 212 200 17 0 chr5 54584650 54584710 -97952549 + CT-rich Low_complexity Low_complexity 3 63 0 1 1001 209 0 0 88 chr5 54585884 54585918 -97951341 + (CAAAA)n Simple_repeat Simple_repeat 3 33 0 1 1001 21 0 0 0 chr5 54586552 54586573 -97950686 + AT_rich Low_complexity Low_complexity 1 21 0 1 1001 270 0 0 0 chr5 54587204 54587234 -97950025 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1001 393 327 42 57 chr5 54587383 54587646 -97949613 - RMER15 LTR ERVL -42 533 275 1 1001 225 266 50 12 chr5 54587836 54587916 -97949343 + MLT1G1 LTR MaLR 401 483 -96 1 1001 224 279 12 25 chr5 54588234 54588315 -97948944 + T-rich Low_complexity Low_complexity 2 81 0 1 1001 378 0 0 0 chr5 54591060 54591102 -97946157 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1001 204 116 22 44 chr5 54592852 54592897 -97944362 + T-rich Low_complexity Low_complexity 6 49 0 1 1001 281 184 17 42 chr5 54594118 54594237 -97943022 + (TG)n Simple_repeat Simple_repeat 1 116 0 1 1001 968 258 42 14 chr5 54594239 54594522 -97942737 - B4 SINE B4 0 292 2 1 1001 251 73 0 47 chr5 54595053 54595096 -97942163 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 1 1001 531 312 25 137 chr5 54595597 54595906 -97941353 + MER47A DNA MER2_type 2 284 -82 1 1001 567 96 0 0 chr5 54595906 54595989 -97941270 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1001 531 312 25 137 chr5 54595989 54596002 -97941257 + MER47A DNA MER2_type 285 285 -81 1 1001 971 255 48 45 chr5 54596002 54596293 -97940966 - B4 SINE B4 0 292 1 1 1001 531 312 25 137 chr5 54596293 54596377 -97940882 + MER47A DNA MER2_type 285 363 -3 1 1001 207 338 13 13 chr5 54596999 54597077 -97940182 - L2b LINE L2 -55 3320 3243 1 1001 235 227 212 0 chr5 54597871 54597937 -97939322 + ID_B1 SINE B4 96 175 -49 1 1001 910 224 4 56 chr5 54599161 54599412 -97937847 - Tigger7 DNA MER2_type -1948 543 306 1 1001 749 248 133 61 chr5 54599419 54599780 -97937479 - MTD LTR MaLR -32 387 1 1 1001 413 125 0 0 chr5 54599926 54599990 -97937269 - L1_Mur3 LINE L1 -1787 4093 4030 1 1001 2839 238 44 20 chr5 54599990 54600758 -97936501 + Lx7 LINE L1 6855 7680 -16 1 1001 378 0 0 0 chr5 54601306 54601348 -97935911 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1001 591 15 0 0 chr5 54601352 54601420 -97935839 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 1 1001 984 218 20 10 chr5 54601910 54602109 -97935150 + MTE2b LTR MaLR 178 378 -1 1 1001 509 276 13 19 chr5 54602116 54602275 -97934984 - RMER15 LTR ERVL -70 505 348 1 1001 622 280 193 28 chr5 54602627 54602917 -97934342 + MER2 DNA MER2_type 2 339 -6 1 1001 297 0 0 0 chr5 54603307 54603340 -97933919 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1001 212 236 55 0 chr5 54604104 54604159 -97933100 - L4 LINE RTE -187 1842 1785 1 1001 430 288 105 0 chr5 54604865 54605018 -97932241 - MLT1C LTR MaLR -17 450 282 1 1001 456 321 78 22 chr5 54605130 54605401 -97931858 + MLT1B LTR MaLR 103 388 -2 1 1001 485 97 0 0 chr5 54606567 54606639 -97930620 + Lx2 LINE L1 6926 6997 0 1 1001 640 130 0 17 chr5 54606649 54606766 -97930493 + (GAAA)n Simple_repeat Simple_repeat 2 116 0 1 1001 703 319 113 69 chr5 54606891 54607429 -97929830 + L1M4 LINE L1 556 1117 -5787 1 1001 423 0 0 0 chr5 54607454 54607501 -97929758 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1001 232 299 30 0 chr5 54607712 54607779 -97929480 - Lx8 LINE L1 -581 6892 6824 1 1001 230 240 0 0 chr5 54607918 54607968 -97929291 + Lx9 LINE L1 7099 7148 -496 1 1001 322 152 4 0 chr5 54608234 54608295 -97928964 + L1M4 LINE L1 2992 3045 -3961 1 1001 343 365 0 0 chr5 54608296 54608422 -97928837 + ID_B1 SINE B4 78 203 -21 1 1001 612 221 50 0 chr5 54608422 54608603 -97928656 + L1M4 LINE L1 2220 2409 -3737 1 1001 331 377 22 7 chr5 54608626 54608765 -97928494 + RSINE1 SINE B4 16 156 -9 1 1001 2196 263 15 26 chr5 54608853 54609513 -97927746 + L1M4 LINE L1 2444 3096 -3050 1 1001 495 0 0 0 chr5 54609929 54609984 -97927275 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1001 721 246 117 28 chr5 54611148 54611395 -97925864 - B4 SINE B4 -3 289 21 1 1001 248 294 14 14 chr5 54612808 54612877 -97924382 + B4A SINE B4 3 71 -221 1 1001 486 278 0 0 chr5 54612881 54613061 -97924198 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1001 630 316 84 45 chr5 54613944 54614371 -97922888 - MLT1C LTR MaLR -3 464 21 1 1001 270 81 0 0 chr5 54615698 54615735 -97921524 + (CAA)n Simple_repeat Simple_repeat 2 38 0 1 1001 231 140 0 0 chr5 54616347 54616397 -97920862 + (T)n Simple_repeat Simple_repeat 1 50 0 1 1001 306 241 170 0 chr5 54617981 54618093 -97919166 + MLT1J1 LTR MaLR 1 131 -313 1 1001 286 279 0 0 chr5 54618135 54618203 -97919056 + MER5A DNA MER1_type 33 100 -89 1 1001 712 256 231 24 chr5 54618987 54619129 -97918130 - Lx6 LINE L1 -11 7449 7296 1 1001 375 23 0 0 chr5 54619129 54619173 -97918086 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 1001 712 256 231 24 chr5 54619173 54619406 -97917853 - Lx6 LINE L1 -165 7295 6996 1 1001 302 243 14 14 chr5 54619454 54619596 -97917663 + (TATG)n Simple_repeat Simple_repeat 4 145 0 1 1001 784 96 14 56 chr5 54619762 54619905 -97917354 - L1_Mus3 LINE L1 -27 6611 6475 1 1001 1576 299 96 22 chr5 54620309 54620462 -97916797 + Lx8 LINE L1 6782 6960 -513 1 1001 933 107 0 0 chr5 54620462 54620602 -97916657 + (TCCC)n Simple_repeat Simple_repeat 1 140 0 1 1001 1576 299 96 22 chr5 54620602 54621083 -97916176 + Lx8 LINE L1 6961 7463 -10 1 1001 221 100 41 41 chr5 54621105 54621178 -97916081 + T-rich Low_complexity Low_complexity 2 74 0 1 1001 3423 43 12 5 chr5 54621184 54621608 -97915651 - L1Md_F3 LINE L1 -14 6570 6144 1 1001 265 333 11 11 chr5 54621626 54621714 -97915545 + ID_B1 SINE B4 73 160 -64 1 1001 186 43 0 0 chr5 54621751 54621774 -97915485 + (CAA)n Simple_repeat Simple_repeat 3 25 0 1 1001 298 275 0 35 chr5 54622335 54622448 -97914811 - MLT1A1 LTR MaLR -2 406 298 1 1001 699 90 0 0 chr5 54622602 54622702 -97914557 + (GA)n Simple_repeat Simple_repeat 1 100 0 1 1001 555 16 0 0 chr5 54622933 54622997 -97914262 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 1 1001 244 274 35 62 chr5 54626017 54626130 -97911129 + MLT1L LTR MaLR 92 201 -409 1 1001 633 319 104 21 chr5 54627457 54627784 -97909475 + MLT1A0 LTR MaLR 1 354 -11 1 1001 195 287 78 42 chr5 54628325 54628467 -97908792 + L2a LINE L2 3259 3405 -21 1 1001 693 110 37 0 chr5 54629431 54629594 -97907665 + (TCTA)n Simple_repeat Simple_repeat 1 169 0 1 1001 365 370 12 0 chr5 54631063 54631236 -97906023 - MLT-int LTR MaLR -1129 606 432 1 1001 224 329 0 92 chr5 54631414 54631501 -97905758 + ID4 SINE ID 5 83 0 1 1001 556 349 30 49 chr5 54631504 54631832 -97905427 - MLT-int LTR MaLR -1323 412 91 1 1001 579 326 36 76 chr5 54631902 54632204 -97905055 - MLT1A LTR MaLR 0 374 85 1 1001 204 40 0 0 chr5 54632524 54632549 -97904710 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 1001 333 0 0 0 chr5 54633169 54633206 -97904053 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1001 903 234 98 119 chr5 54633719 54633866 -97903393 + MLT1B LTR MaLR 30 187 -203 1 1001 1293 83 0 0 chr5 54633866 54634046 -97903213 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1001 903 234 98 119 chr5 54634046 54634267 -97902992 + MLT1B LTR MaLR 188 390 0 1 1001 180 234 0 0 chr5 54634425 54634472 -97902787 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1001 314 301 119 33 chr5 54634579 54634789 -97902470 - MLT1H1 LTR MaLR -195 360 133 1 1001 3227 61 8 0 chr5 54634996 54635391 -97901868 - MTB LTR MaLR 0 400 3 1 1001 852 291 24 82 chr5 54635492 54635870 -97901389 - MLT1B LTR MaLR -27 363 8 1 1001 1154 219 116 29 chr5 54636717 54637061 -97900198 + ORR1D1 LTR MaLR 1 374 0 1 1001 1392 182 65 152 chr5 54637090 54637492 -97899767 - ORR1B2 LTR MaLR 0 367 1 1 1001 454 326 85 15 chr5 54637648 54637919 -97899340 + B4A SINE B4 1 290 -2 1 1001 357 93 0 0 chr5 54637936 54637990 -97899269 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1001 2689 109 8 0 chr5 54638028 54638424 -97898835 - L1_Mus3 LINE L1 -2 6636 6238 1 1001 441 0 0 0 chr5 54638724 54638773 -97898486 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1001 556 106 0 0 chr5 54639236 54639321 -97897938 - B1_Mur3 SINE Alu 0 149 65 1 1001 6127 62 43 2 chr5 54639586 54640378 -97896881 - L1_Mus2 LINE L1 0 6566 5743 1 1001 341 307 0 9 chr5 54640674 54640789 -97896470 + GA-rich Low_complexity Low_complexity 1 114 0 1 1001 1772 200 205 16 chr5 54640894 54641397 -97895862 + RMER19B LTR ERVK 305 902 0 1 1001 297 223 61 50 chr5 54641555 54641654 -97895605 - PB1D7 SINE Alu 0 120 21 2 1001 485 309 126 24 chr5 54642424 54642679 -97894580 - MLT2B2 LTR ERVL -14 501 221 2 1001 794 318 38 8 chr5 54642680 54642946 -97894313 + B4 SINE B4 1 274 -18 2 1001 379 298 0 58 chr5 54642995 54643184 -97894075 + (CATA)n Simple_repeat Simple_repeat 2 179 0 2 1001 210 171 0 0 chr5 54643213 54643254 -97894005 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1001 310 278 20 10 chr5 54643255 54643353 -97893906 - MLT2B2 LTR ERVL -380 135 37 2 1001 353 296 66 29 chr5 54644064 54644200 -97893059 - MLT1A1 LTR MaLR 0 408 268 2 1001 237 339 35 26 chr5 54644296 54644411 -97892848 - MLT1A1 LTR MaLR -224 141 26 2 1001 343 351 40 47 chr5 54644435 54644857 -97892402 + Charlie22a DNA MER1_type 69 487 -4 2 1001 390 115 0 0 chr5 54645003 54645064 -97892195 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1001 235 87 65 0 chr5 54645069 54645115 -97892144 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 2 1001 250 295 0 0 chr5 54646186 54646247 -97891012 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1001 572 211 0 111 chr5 54646255 54646399 -97890860 - B1_Mur2 SINE Alu -20 129 2 2 1001 679 165 14 43 chr5 54646830 54646969 -97890290 - B1_Mus1 SINE Alu 0 148 14 2 1001 725 197 126 5 chr5 54648063 54648262 -97888997 - Lx9 LINE L1 0 7644 7422 2 1001 429 386 43 0 chr5 54648533 54648813 -97888446 - MLT1A0 LTR MaLR -3 362 71 2 1001 1971 105 10 20 chr5 54648873 54649165 -97888094 - Lx3_Mus LINE L1 0 7009 6721 2 1001 2023 74 0 0 chr5 54649165 54649422 -97887837 + Lx3_Mus LINE L1 6451 6707 -302 2 1001 429 305 122 0 chr5 54649532 54649729 -97887530 + MIR SINE MIR 17 237 -25 2 1001 813 248 52 24 chr5 54650732 54650980 -97886279 - MER2 DNA MER2_type -5 340 86 2 1001 280 300 10 50 chr5 54652328 54652460 -97884799 + MIRm SINE MIR 30 152 -116 2 1001 264 181 27 45 chr5 54652707 54652817 -97884442 + CT-rich Low_complexity Low_complexity 2 109 0 2 1001 366 226 128 0 chr5 54652824 54652926 -97884333 - BC1_Mm scRNA scRNA -37 115 1 2 1001 3661 199 147 28 chr5 54653956 54654598 -97882661 + RMER1A Other Other 54 800 -230 2 1001 2604 148 5 15 chr5 54654598 54655009 -97882250 - MTB_Mm LTR MaLR 0 407 1 2 1001 3661 199 147 28 chr5 54655009 54655237 -97882022 + RMER1A Other Other 801 1027 -3 2 1001 517 195 0 111 chr5 54655309 54655453 -97881806 + Lx6 LINE L1 7320 7447 -13 2 1001 318 186 72 61 chr5 54655555 54655665 -97881594 - B4 SINE B4 -13 279 78 2 125 716 328 81 52 chr5 54656617 54657464 -97879795 - L1MB4 LINE L1 -3 6177 5294 2 1002 260 116 319 0 chr5 54657677 54657746 -97879513 - L1MB4 LINE L1 -1119 5027 4937 2 1002 250 309 82 54 chr5 54658591 54658775 -97878484 + MIRb SINE MIR 58 248 -20 2 1002 342 0 0 0 chr5 54659109 54659147 -97878112 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1002 1644 188 53 12 chr5 54663213 54663553 -97873706 - ORR1B1 LTR MaLR 0 394 41 2 1002 223 357 31 19 chr5 54664355 54664515 -97872744 - MIRb SINE MIR -106 162 1 2 1002 631 313 22 27 chr5 54664590 54664813 -97872446 - Lx5 LINE L1 -415 6635 6414 2 1002 772 244 0 38 chr5 54664799 54665012 -97872247 + Lx6 LINE L1 7256 7460 0 2 1002 342 339 97 45 chr5 54666046 54666315 -97870944 - L2 LINE L2 -431 2988 2706 2 1002 778 270 23 23 chr5 54666315 54666531 -97870728 + B3 SINE B2 1 216 0 2 1002 550 288 100 32 chr5 54666875 54667184 -97870075 - MTEa LTR MaLR 0 379 6 2 1002 234 323 318 4 chr5 54667189 54667441 -97869818 - L2 LINE L2 -1080 2339 2009 2 1002 1593 110 28 0 chr5 54667558 54667813 -97869446 - RLTR11A LTR ERVK 0 528 267 2 1002 185 321 58 35 chr5 54668669 54668756 -97868503 - L2 LINE L2 -1156 2263 2175 2 1002 285 346 43 43 chr5 54669391 54669530 -97867729 - MIRb SINE MIR -22 246 108 2 1002 1233 144 8 55 chr5 54671868 54672103 -97865156 - URR1B DNA MER1_type 0 225 2 2 1002 292 282 39 2 chr5 54672115 54672208 -97865051 - B1F1 SINE Alu -51 98 4 2 1002 273 363 44 0 chr5 54672348 54672439 -97864820 - MER106B DNA MER1_type -958 101 7 2 1002 505 38 76 0 chr5 54673078 54673183 -97864076 + (TG)n Simple_repeat Simple_repeat 2 114 0 2 1002 266 254 0 0 chr5 54673204 54673267 -97863992 - B3A SINE B2 -67 131 69 2 1002 382 287 92 35 chr5 54673653 54673794 -97863465 + MLT1A0 LTR MaLR 4 152 -222 2 1002 247 386 9 9 chr5 54673792 54673907 -97863352 - PB1D10 SINE Alu 0 117 3 2 1002 717 249 92 26 chr5 54673907 54674132 -97863127 + MLT1A0 LTR MaLR 126 365 0 2 1002 369 0 0 0 chr5 54674281 54674322 -97862937 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1002 541 353 166 13 chr5 54674581 54674960 -97862299 - MLT1K LTR MaLR -10 585 149 2 1002 425 294 102 25 chr5 54675020 54675144 -97862115 + B4A SINE B4 6 141 -151 2 1002 654 335 21 44 chr5 54675144 54675454 -97861805 + B4A SINE B4 1 290 -2 2 1002 342 0 0 0 chr5 54675487 54675525 -97861734 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1002 23 0 0 0 chr5 54675530 54675553 -97861706 + AT_rich Low_complexity Low_complexity 1 23 0 2 1002 7723 46 2 2 chr5 54675553 54677231 -97860028 - L1Md_F3 LINE L1 -12 6572 4896 2 1002 258 106 0 0 chr5 54677288 54677335 -97859924 + (T)n Simple_repeat Simple_repeat 1 47 0 2 1002 511 323 0 19 chr5 54677562 54677723 -97859536 - RSINE1 SINE B4 -4 161 4 2 1002 410 274 0 9 chr5 54678407 54678514 -97858745 + Lx9 LINE L1 7070 7175 -469 2 1002 714 149 0 0 chr5 54678533 54678667 -97858592 + (CA)n Simple_repeat Simple_repeat 2 135 0 2 1002 324 226 0 0 chr5 54678867 54678991 -97858268 + CT-rich Low_complexity Low_complexity 1 124 0 2 1002 534 323 12 12 chr5 54679059 54679225 -97858034 - B4A SINE B4 -2 290 125 2 1002 193 242 0 0 chr5 54679257 54679290 -97857969 + MIRm SINE MIR 48 80 -196 2 1002 216 0 0 0 chr5 54681095 54681119 -97856140 + (TTA)n Simple_repeat Simple_repeat 3 26 0 2 1002 246 267 62 62 chr5 54683689 54683769 -97853490 - MIR3 SINE MIR -16 192 113 2 1002 4719 33 2 16 chr5 54685591 54686173 -97851086 - L1Md_F2 LINE L1 0 6582 6009 2 1002 249 139 0 0 chr5 54686652 54686695 -97850564 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 1002 261 0 0 0 chr5 54687822 54687851 -97849408 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1002 1142 292 113 34 chr5 54688302 54688431 -97848828 - L1MB1 LINE L1 -90 6078 5936 2 1002 2405 40 0 50 chr5 54688431 54688748 -97848511 + L1Md_A LINE L1 6282 6582 0 2 1002 1142 292 113 34 chr5 54688748 54689317 -97847942 - L1MB1 LINE L1 -233 5935 5325 2 1002 788 280 15 62 chr5 54689332 54689591 -97847668 - B4A SINE B4 -45 247 1 2 1002 21103 133 11 13 chr5 54689657 54693953 -97843306 - L1_Mus4 LINE L1 0 6636 2347 2 1002 4299 45 6 0 chr5 54693953 54694462 -97842797 + LTRIS3 LTR ERV1 1 512 0 2 1002 21103 149 11 15 chr5 54694462 54694918 -97842341 - L1_Mus4 LINE L1 -3537 2346 1897 2 1002 808 321 10 90 chr5 54694933 54695221 -97842038 + B4 SINE B4 28 292 0 2 1002 527 125 0 18 chr5 54695221 54695335 -97841924 + (CAGA)n Simple_repeat Simple_repeat 3 114 0 2 1002 355 365 138 31 chr5 54695729 54696224 -97841035 + L2a LINE L2 2697 3271 -155 2 1002 189 107 0 0 chr5 54696224 54696252 -97841007 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2 1002 276 355 218 21 chr5 54696252 54696392 -97840867 + L2a LINE L2 3272 3411 -15 2 1002 559 274 35 55 chr5 54698065 54698266 -97838993 + B3A SINE B2 1 197 -1 2 1002 270 224 91 13 chr5 54699597 54699674 -97837585 + PB1D10 SINE Alu 34 116 -1 2 1002 252 203 17 17 chr5 54699674 54699734 -97837525 + (CCAA)n Simple_repeat Simple_repeat 4 63 0 2 1002 941 135 0 6 chr5 54700171 54700335 -97836924 + (TTTC)n Simple_repeat Simple_repeat 3 165 0 2 1002 768 85 30 8 chr5 54700467 54700598 -97836661 - L1Md_F2 LINE L1 0 6582 6449 2 1002 523 45 0 0 chr5 54700598 54700665 -97836594 + L1Md_F2 LINE L1 6379 6445 -137 2 1002 930 113 0 0 chr5 54700742 54700884 -97836375 + (TTTC)n Simple_repeat Simple_repeat 2 143 0 2 1002 826 126 71 0 chr5 54700884 54701011 -97836248 - B1_Mus1 SINE Alu -12 136 1 2 1002 6855 112 15 12 chr5 54702808 54703964 -97833295 + Lx LINE L1 5488 6650 -4 2 1002 2173 200 54 12 chr5 54704015 54704496 -97832763 - Lx2B LINE L1 -6 6994 6494 2 1002 22 35 0 0 chr5 54705017 54705046 -97832213 + AT_rich Low_complexity Low_complexity 1 29 0 2 1002 358 305 39 15 chr5 54705695 54705806 -97831453 - PB1D10 SINE Alu -35 114 1 2 1002 5083 53 0 5 chr5 54705880 54706503 -97830756 - L1Md_F2 LINE L1 -12 6570 5951 2 1002 23 0 0 0 chr5 54706732 54706755 -97830504 + AT_rich Low_complexity Low_complexity 1 23 0 2 1002 196 316 18 109 chr5 54706976 54707086 -97830173 + MER5A DNA MER1_type 13 112 -77 2 1002 189 211 0 0 chr5 54707139 54707191 -97830068 + (CAGA)n Simple_repeat Simple_repeat 3 54 0 2 1002 697 299 121 32 chr5 54707812 54708216 -97829043 + L1MCa LINE L1 2 441 -6067 2 1002 384 200 0 28 chr5 54708216 54708324 -97828935 + GA-rich Low_complexity Low_complexity 1 105 0 2 1002 27 0 0 0 chr5 54708344 54708371 -97828888 + AT_rich Low_complexity Low_complexity 1 27 0 2 1002 9612 131 35 19 chr5 54708394 54711220 -97826039 - Lx4A LINE L1 -2 7056 4171 2 1002 587 346 9 56 chr5 54711377 54711591 -97825668 - B4A SINE B4 -2 290 87 2 1002 267 343 91 5 chr5 54711639 54711838 -97825421 + L1MCa LINE L1 474 689 -5819 2 1002 242 29 0 28 chr5 54711938 54711974 -97825285 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 2 1002 1510 196 89 29 chr5 54712035 54712382 -97824877 + ORR1D1 LTR MaLR 1 368 -6 2 1002 1923 103 0 19 chr5 54712383 54712691 -97824568 - L1_Mus1 LINE L1 -453 5430 5129 2 1002 7421 67 4 0 chr5 54712690 54713824 -97823435 + L1_Mus1 LINE L1 5438 6654 0 2 1002 1339 264 54 68 chr5 54713852 54714644 -97822615 + L1MCa LINE L1 1002 1782 -4726 2 1002 285 98 0 0 chr5 54714753 54714794 -97822465 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1002 309 244 115 127 chr5 54714819 54715228 -97822031 + L1MCa LINE L1 4006 4409 -1912 2 1002 421 284 81 5 chr5 54715233 54715431 -97821828 - L1MC LINE L1 -847 5497 5285 2 1002 378 283 58 45 chr5 54715452 54715744 -97821515 + L1MCa LINE L1 4475 4770 -1551 2 1002 6657 112 19 19 chr5 54715780 54716845 -97820414 + Lx LINE L1 5587 6651 -3 2 1002 922 299 69 9 chr5 54716973 54717392 -97819867 - Lx8 LINE L1 -155 7318 6875 2 1002 2493 229 98 20 chr5 54717616 54718308 -97818951 - Lx6 LINE L1 -28 7432 6687 3 1002 261 264 41 98 chr5 54718958 54719080 -97818179 + MIR SINE MIR 59 173 -89 3 1002 918 322 30 30 chr5 54719208 54719474 -97817785 + B4 SINE B4 1 266 -26 3 1002 525 160 0 0 chr5 54719522 54719628 -97817631 + (CA)n Simple_repeat Simple_repeat 1 106 0 3 1002 280 359 91 25 chr5 54720416 54720613 -97816646 + MIRc SINE MIR 3 212 -56 3 1002 339 260 84 65 chr5 54720745 54720852 -97816407 - MLT1B LTR MaLR -7 460 352 3 1002 609 296 75 75 chr5 54720876 54721154 -97816105 - MLT1B LTR MaLR -187 280 3 3 1002 228 67 0 0 chr5 54721310 54721340 -97815919 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 3 1002 21 57 0 0 chr5 54722120 54722155 -97815104 + AT_rich Low_complexity Low_complexity 1 35 0 3 1002 250 355 68 107 chr5 54722215 54722420 -97814839 + ID_B1 SINE B4 3 199 -25 3 1002 652 122 0 0 chr5 54722420 54722518 -97814741 - L1Md_F3 LINE L1 -224 6414 6317 3 1002 7725 46 14 2 chr5 54722949 54723916 -97813343 + L1Md_F3 LINE L1 5605 6583 -1 3 1002 2576 76 3 0 chr5 54723916 54724272 -97812987 - L1_Mus1 LINE L1 -2 6565 6209 3 1002 13073 70 4 1 chr5 54724267 54726237 -97811022 - L1Md_F3 LINE L1 -500 6084 4108 3 1002 253 375 132 0 chr5 54726889 54727033 -97810226 + LTR86A2 LTR ERVL 5 167 -341 3 1002 774 212 0 0 chr5 54730499 54730669 -97806590 + (TA)n Simple_repeat Simple_repeat 2 171 0 3 1002 2010 66 4 18 chr5 54731217 54731496 -97805763 - L1_Mus2 LINE L1 -128 6438 6164 3 1002 802 79 0 0 chr5 54731496 54731610 -97805649 + L1_Mus2 LINE L1 6443 6556 -10 3 1002 531 0 0 0 chr5 54731845 54731904 -97805355 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 3 1002 289 326 144 24 chr5 54731985 54732198 -97805061 + MLT1F2 LTR MaLR 304 548 -12 3 1002 1136 274 82 36 chr5 54732825 54732989 -97804270 - MTE2b LTR MaLR -4 375 212 3 1002 441 0 0 0 chr5 54732989 54733038 -97804221 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1002 1136 274 82 36 chr5 54733038 54733229 -97804030 - MTE2b LTR MaLR -168 211 4 3 1002 533 291 0 39 chr5 54733386 54733540 -97803719 - B1F2 SINE Alu -1 148 1 3 1002 348 258 39 46 chr5 54733802 54733932 -97803327 - L1MA8 LINE L1 -276 6015 5887 3 1002 636 26 0 0 chr5 54734102 54734180 -97803079 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 1002 202 194 14 14 chr5 54735249 54735322 -97801937 + A-rich Low_complexity Low_complexity 2 74 0 3 1002 360 0 0 0 chr5 54735342 54735382 -97801877 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 3 1002 4950 164 34 11 chr5 54736195 54736442 -97800817 - Lx5 LINE L1 -493 6557 6296 3 1002 2052 235 16 128 chr5 54736442 54737130 -97800129 + RMER19C LTR ERVK 1 611 0 3 1002 6860 153 18 10 chr5 54737130 54738797 -97798462 - Lx5 LINE L1 -755 6295 4616 3 1002 282 364 16 56 chr5 54739740 54739865 -97797394 - MLT1I LTR MaLR -278 133 14 3 1002 351 319 112 48 chr5 54740157 54740345 -97796914 - MIRb SINE MIR -46 222 23 3 1002 23 0 0 0 chr5 54741760 54741783 -97795476 + AT_rich Low_complexity Low_complexity 1 23 0 3 1002 187 338 65 0 chr5 54743049 54743126 -97794133 - MIRb SINE MIR -28 240 159 3 1002 984 261 80 56 chr5 54743229 54743602 -97793657 - RLTR14 LTR ERV1 0 382 1 3 1002 1101 76 7 0 chr5 54743970 54744115 -97793144 + B1_Mus2 SINE Alu 2 147 0 3 1002 279 0 0 0 chr5 54744314 54744345 -97792914 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 3 1002 324 64 0 0 chr5 54744519 54744566 -97792693 + (CATA)n Simple_repeat Simple_repeat 4 50 0 3 1002 210 71 0 0 chr5 54744801 54744829 -97792430 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1002 1073 116 0 0 chr5 54744832 54744979 -97792280 - B1_Mus1 SINE Alu 0 148 2 3 1002 461 84 14 0 chr5 54746036 54746107 -97791152 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1002 250 382 28 25 chr5 54746143 54746425 -97790834 - B4A SINE B4 -8 284 2 3 1002 653 168 0 6 chr5 54746448 54746628 -97790631 + CT-rich Low_complexity Low_complexity 2 180 0 3 1002 195 193 26 52 chr5 54748010 54748125 -97789134 + (CATA)n Simple_repeat Simple_repeat 3 114 0 3 1002 200 273 0 0 chr5 54748137 54748181 -97789078 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1002 216 0 0 0 chr5 54749757 54749781 -97787478 + (CACCC)n Simple_repeat Simple_repeat 1 24 0 3 1002 382 329 39 10 chr5 54749811 54749981 -97787278 - MIR3 SINE MIR -23 185 16 3 1002 856 284 5 5 chr5 54750964 54751183 -97786076 - ID_B1 SINE B4 -4 220 2 3 1002 183 42 0 0 chr5 54752678 54752702 -97784557 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1002 2239 162 8 3 chr5 54753980 54754345 -97782914 - ORR1B2 LTR MaLR 0 367 1 3 1002 3667 220 90 32 chr5 54754348 54755620 -97781639 - ORR1B2-int LTR MaLR -10 1360 1 3 1002 2233 151 25 3 chr5 54755620 54755979 -97781280 - ORR1B2 LTR MaLR 0 367 1 3 1002 231 273 97 35 chr5 54756428 54756542 -97780717 - MIR SINE MIR -86 176 56 3 1002 712 261 87 13 chr5 54757067 54757271 -97779988 - ORR1D2 LTR MaLR -58 316 96 3 1002 592 296 13 0 chr5 54760232 54760384 -97776875 + ID_B1 SINE B4 2 155 -69 3 1002 641 297 68 29 chr5 54760394 54760751 -97776508 - MTD LTR MaLR -15 404 5 3 1002 4947 120 49 0 chr5 54761192 54761923 -97775336 + Lx2B LINE L1 6231 6997 -3 3 1002 290 320 51 11 chr5 54761924 54762043 -97775216 + MLT1G3 LTR MaLR 306 421 -158 3 1002 5791 47 1 12 chr5 54762073 54762805 -97774454 + L1Md_F3 LINE L1 5861 6584 0 3 1002 1792 72 37 22 chr5 54764888 54765158 -97772101 - L1Md_F2 LINE L1 0 6582 6309 3 1002 239 386 31 21 chr5 54765616 54765809 -97771450 + MamRep137 DNA TcMar? 23 217 -227 3 1002 660 115 0 0 chr5 54766287 54766400 -97770859 + (TC)n Simple_repeat Simple_repeat 1 113 0 3 1002 216 290 58 39 chr5 54766679 54766783 -97770476 - MIR SINE MIR -64 198 93 3 1002 3310 225 67 16 chr5 54768135 54769049 -97768210 + Lx9 LINE L1 6088 7047 -597 3 1002 772 126 16 0 chr5 54769070 54769197 -97768062 - Lx4A LINE L1 -365 6693 6565 3 1002 1099 298 50 18 chr5 54769318 54769755 -97767504 + RMER15-int LTR ERVL 4197 4647 -352 3 1002 410 200 11 22 chr5 54769781 54769873 -97767386 + RMER15-int LTR ERVL 4888 4978 -21 3 1002 249 256 126 99 chr5 54769880 54770071 -97767188 + RMER15 LTR ERVL 8 203 -372 3 1002 463 296 0 34 chr5 54770088 54770235 -97767024 + RMER15 LTR ERVL 345 486 -89 3 1002 288 0 0 0 chr5 54770235 54770267 -97766992 + (ATG)n Simple_repeat Simple_repeat 3 34 0 3 1002 390 21 0 0 chr5 54770267 54770314 -97766945 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1002 1718 309 80 43 chr5 54770619 54771584 -97765675 - MLT1H-int LTR MaLR -191 1298 181 3 1002 333 320 63 17 chr5 54771610 54771785 -97765474 + MLT1D LTR MaLR 34 216 -289 3 1002 993 126 11 6 chr5 54772226 54772402 -97764857 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 3 1002 508 350 60 58 chr5 54773374 54773820 -97763439 + Lx8 LINE L1 7024 7470 -3 3 1002 1345 285 101 33 chr5 54773993 54774537 -97762722 + LTR69 LTR ERVL 1 581 -7 3 1002 4024 83 18 2 chr5 54775075 54775619 -97761640 - L1_Mus3 LINE L1 -2 6636 6084 3 1002 807 88 0 0 chr5 54776079 54776192 -97761067 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 3 1002 1089 86 0 0 chr5 54776192 54776332 -97760927 - B1_Mus1 SINE Alu -7 141 2 3 1002 655 266 14 115 chr5 54777521 54777729 -97759530 - B3A SINE B2 -8 190 4 3 1002 364 266 130 17 chr5 54777729 54777823 -97759436 - B3A SINE B2 -88 110 4 3 1002 6945 160 15 32 chr5 54778182 54779282 -97757977 + Lx LINE L1 4562 5671 -212 3 1002 237 33 0 0 chr5 54779282 54779312 -97757947 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3 1002 6945 110 5 35 chr5 54779312 54779342 -97757917 + Lx LINE L1 5672 5672 -982 3 1002 1059 86 0 0 chr5 54779342 54779481 -97757778 - B1_Mus1 SINE Alu -8 140 2 3 1002 6945 110 5 35 chr5 54779481 54780459 -97756800 + Lx LINE L1 5672 6653 -1 3 1002 181 325 36 72 chr5 54781169 54781252 -97756007 + L2c LINE L2 3048 3127 -260 3 1002 218 305 111 45 chr5 54781425 54781624 -97755635 + MIRb SINE MIR 12 223 -45 3 1002 208 288 90 41 chr5 54781698 54781843 -97755416 + MIR SINE MIR 49 200 -62 3 1002 1458 80 0 0 chr5 54782480 54782680 -97754579 - L1_Mus2 LINE L1 -1 6565 6366 3 1002 387 0 0 0 chr5 54782717 54782760 -97754499 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1002 294 29 0 0 chr5 54784865 54784900 -97752359 + (TATG)n Simple_repeat Simple_repeat 1 35 0 3 1002 359 312 83 122 chr5 54784971 54785332 -97751927 + MLT1A0 LTR MaLR 11 357 -8 3 1002 215 297 188 0 chr5 54785689 54785790 -97751469 + MIRb SINE MIR 120 239 -29 3 1002 186 243 113 14 chr5 54786662 54786733 -97750526 - L2 LINE L2 -630 2789 2712 3 1002 435 356 37 37 chr5 54786793 54787015 -97750244 + ID_B1 SINE B4 3 256 -36 3 1002 319 298 98 27 chr5 54787015 54787037 -97750222 - RLTR21 LTR ERVK -351 971 951 3 1002 267 31 0 0 chr5 54787037 54787069 -97750190 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1002 304 375 75 46 chr5 54787069 54787106 -97750153 + B4A SINE B4 257 292 0 3 1002 587 234 77 26 chr5 54787106 54787341 -97749918 - RLTR21 LTR ERVK -266 1306 1066 3 1002 3040 141 10 22 chr5 54787346 54787541 -97749718 + L1_Mur2 LINE L1 771 959 -6127 3 1002 327 25 0 0 chr5 54787541 54787581 -97749678 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3 125 3258 127 31 14 chr5 54787581 54788440 -97748819 + L1_Mur2 LINE L1 960 1836 -4041 3 1003 3478 111 52 10 chr5 54788474 54788980 -97748279 + Lx3A LINE L1 6437 6968 -13 3 1003 447 19 0 0 chr5 54788980 54789032 -97748227 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 3 1003 3478 111 52 10 chr5 54789032 54789045 -97748214 + Lx3A LINE L1 6969 6978 -3 3 1003 1744 113 10 3 chr5 54789046 54789338 -97747921 + L1_Mur2 LINE L1 4510 4803 -1074 3 1003 1565 263 22 79 chr5 54789338 54789783 -97747476 - RMER19C LTR ERVK 0 611 190 3 1003 752 21 0 11 chr5 54789783 54789878 -97747381 + (CTATT)n Simple_repeat Simple_repeat 4 97 0 3 1003 1565 263 22 79 chr5 54789878 54789927 -97747332 - RMER19C LTR ERVK -422 189 145 3 1003 6220 120 59 0 chr5 54789972 54791062 -97746197 + Lx4A LINE L1 4797 5952 -1106 3 1003 578 162 20 0 chr5 54791061 54791160 -97746099 + Lx4A LINE L1 6795 6895 -163 3 1003 1439 235 51 13 chr5 54791179 54791494 -97745765 - RLTR21 LTR ERVK -1245 327 1 3 1003 317 278 11 53 chr5 54791497 54791592 -97745667 + ID_B1 SINE B4 133 223 -1 3 1003 8903 57 1 2 chr5 54791875 54793060 -97744199 - L1Md_F2 LINE L1 -342 5541 4358 3 1003 501 62 0 0 chr5 54793059 54793123 -97744136 + L1Md_F2 LINE L1 5522 5585 -298 3 1003 7743 64 1 4 chr5 54793124 54794111 -97743148 + L1Md_F2 LINE L1 5587 6570 -12 3 1003 1886 136 27 59 chr5 54795291 54795628 -97741631 - ORR1A3 LTR MaLR 0 326 1 3 1003 305 302 58 41 chr5 54795751 54795872 -97741387 + RSINE1 SINE B4 43 165 0 3 1003 213 93 18 36 chr5 54796103 54796159 -97741100 + (CAAA)n Simple_repeat Simple_repeat 3 57 0 3 1003 894 267 117 8 chr5 54796592 54796841 -97740418 + MLT1A0 LTR MaLR 81 356 -9 4 1003 208 255 20 0 chr5 54797334 54797385 -97739874 + (TATG)n Simple_repeat Simple_repeat 3 54 0 4 1003 708 322 132 50 chr5 54798035 54798453 -97738806 - MLT1E2 LTR MaLR -4 623 172 4 1003 285 360 22 0 chr5 54798494 54798583 -97738676 + B4A SINE B4 50 140 -152 4 1003 240 288 0 17 chr5 54798706 54798766 -97738493 + Lx8 LINE L1 6936 6994 -479 4 1003 367 300 90 23 chr5 54798764 54798897 -97738362 + Lx8 LINE L1 7182 7323 -150 4 1003 324 0 0 0 chr5 54799076 54799112 -97738147 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1003 1059 38 0 0 chr5 54799112 54799243 -97738016 + (GA)n Simple_repeat Simple_repeat 1 132 0 4 1003 311 306 66 8 chr5 54799246 54799368 -97737891 - MLT1E2 LTR MaLR -426 198 70 4 1003 306 98 0 0 chr5 54799851 54799902 -97737357 + (T)n Simple_repeat Simple_repeat 1 51 0 4 1003 611 339 134 49 chr5 54799942 54800459 -97736800 - MER67C LTR ERV1 0 514 1 4 1003 834 310 32 109 chr5 54800620 54801025 -97736234 - MTE2a LTR MaLR 0 379 6 4 1003 208 379 0 0 chr5 54801734 54801829 -97735430 + L3 LINE CR1 4304 4398 -91 4 1003 1066 336 37 47 chr5 54803596 54804086 -97733173 + MLT2B1 LTR ERVL 30 514 -6 4 1003 1132 218 129 9 chr5 54804799 54805133 -97732126 - ORR1D1 LTR MaLR 0 374 1 4 1003 465 307 71 27 chr5 54806312 54806496 -97730763 + MER20 DNA MER1_type 28 219 0 4 1003 197 395 134 0 chr5 54807860 54807994 -97729265 - L2a LINE L2 -14 3412 3261 4 1003 333 0 0 0 chr5 54807994 54808031 -97729228 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1003 540 0 0 0 chr5 54808031 54808090 -97729169 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1003 529 150 0 1 chr5 54808743 54808832 -97728427 + MT2B LTR ERVL 1 88 -445 4 1003 612 101 0 0 chr5 54808832 54808921 -97728338 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 4 1003 777 241 118 117 chr5 54808931 54809133 -97728126 + MT2B LTR ERVL 57 337 -264 4 1003 2994 78 3 0 chr5 54809133 54809566 -97727693 + L1_Mus1 LINE L1 6174 6567 0 4 1003 848 229 24 75 chr5 54809566 54809799 -97727460 + MT2B LTR ERVL 180 540 -61 4 1003 456 232 20 0 chr5 54809823 54809974 -97727285 + (TA)n Simple_repeat Simple_repeat 2 155 0 4 1003 255 169 0 3 chr5 54809983 54810033 -97727226 + MT2B2 LTR ERVL 542 584 0 4 1003 269 231 19 0 chr5 54810033 54810084 -97727175 - MLT1A0 LTR MaLR -87 278 227 4 1003 377 308 0 0 chr5 54810850 54810941 -97726318 + MIRb SINE MIR 50 140 -128 4 1003 715 39 15 59 chr5 54811930 54812065 -97725194 + (TCTCTG)n Simple_repeat Simple_repeat 4 132 0 4 1003 965 251 39 39 chr5 54812109 54812341 -97724918 - B4A SINE B4 -60 232 1 4 1003 261 281 110 59 chr5 54812436 54812572 -97724687 - MIR3 SINE MIR -32 176 34 4 1003 729 180 18 0 chr5 54813345 54813512 -97723747 + GA-rich Low_complexity Low_complexity 2 171 0 4 1003 302 346 161 36 chr5 54814575 54814824 -97722435 - MLT1K LTR MaLR -16 579 300 4 1003 319 336 65 32 chr5 54815156 54815279 -97721980 - PB1D10 SINE Alu -20 129 3 4 1003 1002 269 17 33 chr5 54816100 54816520 -97720739 - Lx7 LINE L1 -1474 5999 5587 4 1003 25 0 0 0 chr5 54817726 54817751 -97719508 + AT_rich Low_complexity Low_complexity 1 25 0 4 1003 420 118 0 0 chr5 54818123 54818191 -97719068 + (TG)n Simple_repeat Simple_repeat 2 69 0 4 1003 186 43 0 0 chr5 54818672 54818695 -97718564 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 4 1003 313 268 29 73 chr5 54818916 54819053 -97718206 + RMER15 LTR ERVL 1 131 -444 4 1003 712 248 104 36 chr5 54819133 54819355 -97717904 + RMER15 LTR ERVL 327 563 -12 4 1003 25 75 0 0 chr5 54819758 54819811 -97717448 + AT_rich Low_complexity Low_complexity 1 53 0 4 1003 1664 200 22 6 chr5 54821801 54822123 -97715136 + Lx5 LINE L1 6718 7044 -6 4 1003 240 167 60 0 chr5 54822134 54822218 -97715041 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 1003 432 252 4 0 chr5 54822409 54822502 -97714757 - PB1D10 SINE Alu -6 111 19 4 1003 525 131 0 0 chr5 54822623 54822707 -97714552 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 4 1003 259 138 34 17 chr5 54822902 54822961 -97714298 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 4 1003 334 332 129 37 chr5 54823417 54823689 -97713570 + MLT1L LTR MaLR 311 607 -3 4 1003 891 28 0 0 chr5 54823991 54824097 -97713162 + (TTC)n Simple_repeat Simple_repeat 2 107 0 4 1003 1063 110 7 0 chr5 54824104 54824250 -97713009 - B1_Mus2 SINE Alu 0 147 1 4 1003 1501 17 6 0 chr5 54825458 54825638 -97711621 - L1Md_A LINE L1 0 6582 6402 4 1003 312 256 33 22 chr5 54826553 54826645 -97710614 - MIRc SINE MIR -9 259 167 4 1003 235 327 75 19 chr5 54826650 54826756 -97710503 + MLT1J2 LTR MaLR 3 114 -334 4 1003 383 264 17 60 chr5 54826926 54827043 -97710216 - Tigger5 DNA MER2_type 0 2406 2295 4 1003 201 147 0 0 chr5 54827067 54827101 -97710158 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 4 1003 802 343 49 0 chr5 54827233 54827478 -97709781 + B4 SINE B4 1 257 -35 4 1003 303 340 68 14 chr5 54827707 54827853 -97709406 + MER58B DNA MER1_type 167 320 -21 4 1003 291 93 0 0 chr5 54829104 54829147 -97708112 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1003 594 250 66 62 chr5 54829254 54829497 -97707762 - B4A SINE B4 -46 246 3 4 1003 665 23 0 0 chr5 54830123 54830210 -97707049 + L1Md_A LINE L1 6496 6582 0 4 1003 294 50 0 0 chr5 54830366 54830406 -97706853 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1003 211 298 23 45 chr5 54831510 54831598 -97705661 + L3 LINE CR1 3143 3228 -1261 4 1003 491 260 10 155 chr5 54831687 54831887 -97705372 + MER53 DNA hAT 23 193 0 4 1003 278 53 0 0 chr5 54833319 54833357 -97703902 + RLTR10 LTR ERVK 1 38 -352 4 1003 257 0 0 0 chr5 54833362 54833398 -97703861 - RLTR10 LTR ERVK -354 36 1 4 1003 1038 39 0 0 chr5 54833410 54833537 -97703722 + (TCTA)n Simple_repeat Simple_repeat 2 128 0 4 1003 308 253 131 47 chr5 54833539 54833730 -97703529 - ID_B1 SINE B4 -14 210 4 4 1003 3525 69 6 42 chr5 54834113 54834613 -97702646 - LTRIS_Mm LTR ERV1 0 482 1 4 1003 319 313 72 0 chr5 54834844 54834927 -97702332 - B1F2 SINE Alu -60 89 1 4 1003 1883 155 66 39 chr5 54835090 54835500 -97701759 + Lx2B LINE L1 6579 6999 -1 4 1003 185 100 0 48 chr5 54835598 54835640 -97701619 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 4 1003 534 358 112 18 chr5 54836610 54836882 -97700377 - L3 LINE CR1 -3 4486 4191 4 1003 195 42 0 0 chr5 54836882 54836906 -97700353 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4 1003 534 358 112 18 chr5 54836906 54837025 -97700234 - L3 LINE CR1 -299 4190 4058 4 1003 369 316 72 47 chr5 54837073 54837322 -97699937 - MIRb SINE MIR -2 266 5 4 1003 434 225 56 0 chr5 54838190 54838279 -97698980 + B1F SINE Alu 34 127 -22 4 1003 279 0 0 0 chr5 54838398 54838429 -97698830 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1003 324 0 0 0 chr5 54838429 54838464 -97698795 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1003 1302 278 21 83 chr5 54838468 54838852 -97698407 + MTE2b LTR MaLR 16 375 -4 4 1003 258 176 0 0 chr5 54838860 54838911 -97698348 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1003 430 103 26 0 chr5 54838911 54838989 -97698270 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1003 966 296 8 30 chr5 54839007 54839272 -97697987 - B4A SINE B4 -32 260 2 4 1003 2174 121 15 6 chr5 54839987 54840321 -97696938 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1003 24674 25 15 12 chr5 54840321 54843380 -97693879 + IAPEz-int LTR ERVK 8 3076 -3405 4 1003 6278 55 12 18 chr5 54843366 54844221 -97693038 + IAPEz-int LTR ERVK 5630 6479 -2 4 1003 2174 121 15 6 chr5 54844223 54844557 -97692702 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1003 1918 124 48 0 chr5 54844557 54844847 -97692412 + ORR1A2 LTR MaLR 24 327 0 4 1003 801 40 0 0 chr5 54845141 54845242 -97692017 + (TC)n Simple_repeat Simple_repeat 1 101 0 4 1003 548 344 22 16 chr5 54845880 54846063 -97691196 - MLT1B LTR MaLR -3 387 204 4 1003 232 366 85 19 chr5 54846824 54847094 -97690165 - LTR16B1 LTR ERVL -89 391 104 4 1003 180 152 0 0 chr5 54847313 54847346 -97689913 + CT-rich Low_complexity Low_complexity 2 34 0 4 1003 223 412 21 0 chr5 54847531 54847628 -97689631 - PB1D10 SINE Alu -18 99 1 4 1003 580 154 68 8 chr5 54847643 54847761 -97689498 - RMER1B Other Other -11 1055 931 4 1003 637 270 55 113 chr5 54848303 54848529 -97688730 - MTE2b-int LTR MaLR -529 1051 901 4 1003 302 247 24 24 chr5 54848524 54848607 -97688652 - MTE2b LTR MaLR -6 373 291 4 1003 15608 130 21 9 chr5 54849339 54852959 -97684300 - L1Md_F LINE L1 -2114 3769 108 4 1003 233 352 0 0 chr5 54853383 54853474 -97683785 + CT-rich Low_complexity Low_complexity 2 92 0 4 1003 471 63 0 0 chr5 54854965 54855028 -97682231 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 4 1003 329 294 80 83 chr5 54855271 54855634 -97681625 + L1MB1 LINE L1 5312 5673 -516 4 1003 22492 157 26 18 chr5 54856087 54862212 -97675047 + Lx2B LINE L1 820 7000 0 4 1003 231 318 31 23 chr5 54862275 54862404 -97674855 + L1MB1 LINE L1 5967 6096 -72 4 1003 249 308 122 0 chr5 54864069 54864176 -97673083 + L2a LINE L2 2969 3088 -338 4 1003 522 0 0 0 chr5 54864579 54864637 -97672622 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1003 189 316 92 35 chr5 54864814 54864955 -97672304 - MIR SINE MIR -44 218 70 4 1003 852 319 20 24 chr5 54865201 54865448 -97671811 - B4A SINE B4 -14 278 33 4 1003 1044 250 99 135 chr5 54866519 54867014 -97670245 + RMER5 LTR ERV1 38 514 -20 4 1003 21 36 0 0 chr5 54867939 54867967 -97669292 + AT_rich Low_complexity Low_complexity 1 28 0 4 1003 530 216 37 47 chr5 54868780 54868970 -97668289 - L1MB8 LINE L1 0 6178 5991 4 1003 654 317 97 129 chr5 54869045 54869427 -97667832 + ORR1E LTR MaLR 1 377 -2 4 1003 252 299 68 14 chr5 54869427 54869573 -97667686 + L1M2 LINE L1 5107 5260 -883 4 1003 184 186 34 0 chr5 54869718 54869777 -97667482 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1003 24 32 0 0 chr5 54869829 54869860 -97667399 + AT_rich Low_complexity Low_complexity 1 31 0 4 1003 22 0 0 0 chr5 54869968 54869990 -97667269 + AT_rich Low_complexity Low_complexity 1 22 0 4 1003 2770 68 18 3 chr5 54870925 54871307 -97665952 + L1_Mus3 LINE L1 6248 6635 -3 5 1003 341 292 50 86 chr5 54871324 54871554 -97665705 - MIRc SINE MIR -19 249 23 5 1003 207 0 0 0 chr5 54871563 54871586 -97665673 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1003 964 255 194 22 chr5 54871586 54871922 -97665337 + MTD LTR MaLR 21 395 -24 5 1003 495 145 0 0 chr5 54872054 54872137 -97665122 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 1003 207 319 42 52 chr5 54872201 54872297 -97664962 - MIRb SINE MIR -29 239 145 5 1003 3773 12 2 0 chr5 54872360 54872792 -97664467 - L1Md_A LINE L1 0 6582 6150 5 1003 374 242 40 16 chr5 54872847 54872973 -97664286 - Tigger7 DNA MER2_type -94 2397 2269 5 1003 26 30 0 0 chr5 54873161 54873194 -97664065 + AT_rich Low_complexity Low_complexity 1 33 0 5 1003 938 308 38 4 chr5 54873213 54873477 -97663782 - B4A SINE B4 -6 286 14 5 1003 243 0 0 0 chr5 54874258 54874285 -97662974 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 5 1003 675 78 0 0 chr5 54874285 54874387 -97662872 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 5 1003 435 63 0 0 chr5 54876929 54876992 -97660267 + (TTTTTG)n Simple_repeat Simple_repeat 2 64 0 5 1003 571 374 38 56 chr5 54876993 54877313 -97659946 + MLT1G LTR MaLR 239 552 -39 5 1003 570 281 121 30 chr5 54877339 54877537 -97659722 - B3A SINE B2 0 216 1 5 1003 435 19 0 0 chr5 54877704 54877756 -97659503 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1003 299 267 57 65 chr5 54877769 54877893 -97659366 + MTEb LTR MaLR 2 124 -255 5 1003 803 125 7 0 chr5 54878168 54878304 -97658955 + (TTCC)n Simple_repeat Simple_repeat 3 139 0 5 1003 535 159 15 22 chr5 54878484 54878619 -97658640 + C-rich Low_complexity Low_complexity 6 139 0 5 1003 399 287 35 56 chr5 54878625 54878948 -97658311 - L1MA4A LINE L1 -279 6021 5695 5 1003 283 301 77 30 chr5 54879248 54879513 -97657746 - L1_Rod LINE L1 -557 5323 5015 5 1003 1698 25 0 0 chr5 54879644 54879845 -97657414 + L1_Mus1 LINE L1 6367 6567 0 5 1003 744 338 81 76 chr5 54879846 54880515 -97656744 + MLT1G-int LTR MaLR 228 899 -510 5 1003 242 385 16 32 chr5 54881078 54881204 -97656055 + MLT1G LTR MaLR 417 540 -55 5 1003 471 63 0 0 chr5 54881266 54881329 -97655930 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1003 749 195 246 0 chr5 54881335 54881530 -97655729 - L1_Mur1 LINE L1 -95 5791 5549 5 1003 2234 139 0 14 chr5 54881530 54881887 -97655372 - Lx LINE L1 -1 6653 6302 5 1003 1333 259 114 8 chr5 54881960 54882337 -97654922 - MTD LTR MaLR -2 417 1 5 1003 6268 62 9 8 chr5 54883519 54884385 -97652874 - L1Md_F2 LINE L1 -12 6570 5704 5 1003 7844 72 8 3 chr5 54884385 54885480 -97651779 + L1Md_F2 LINE L1 4605 5705 -178 5 1003 270 224 39 13 chr5 54885511 54885588 -97651671 - MTEa LTR MaLR -7 372 294 5 1003 273 29 0 0 chr5 54885717 54885751 -97651508 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1003 283 327 85 39 chr5 54886765 54887048 -97650211 + L1ME3 LINE L1 4962 5257 -889 5 1003 405 338 41 37 chr5 54887242 54887485 -97649774 + L1ME3 LINE L1 5481 5724 -438 5 1003 281 329 32 37 chr5 54887609 54887855 -97649404 + L1ME3 LINE L1 5910 6154 -8 5 1003 569 310 96 18 chr5 54887982 54888202 -97649057 + MER74A LTR ERVL 134 370 -188 5 1003 282 106 0 0 chr5 54888477 54888524 -97648735 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 5 1003 249 295 27 62 chr5 54889338 54889450 -97647809 - MER110A LTR ERV1 -27 441 334 5 1003 432 55 0 0 chr5 54891836 54891891 -97645368 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1003 275 200 134 24 chr5 54891930 54892012 -97645247 - L1MA4 LINE L1 -374 5926 5836 5 1003 399 41 0 0 chr5 54892462 54892511 -97644748 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1003 388 382 7 32 chr5 54892680 54892834 -97644425 - ID_B1 SINE B4 -8 216 67 5 1003 5696 92 77 1 chr5 54892854 54893746 -97643513 - L1_Mus1 LINE L1 -653 5914 4982 5 1003 5220 64 16 23 chr5 54893746 54894453 -97642806 + L1_Mus1 LINE L1 5866 6567 0 5 1003 187 350 37 12 chr5 54894565 54894646 -97642613 + MER5B DNA MER1_type 94 176 -2 5 1003 242 346 18 27 chr5 54895592 54895702 -97641557 - MIRm SINE MIR -121 155 47 5 1003 611 304 0 20 chr5 54896165 54896313 -97640946 - RSINE1 SINE B4 -14 151 7 5 1003 257 75 0 24 chr5 54896531 54896572 -97640687 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 5 1003 681 355 81 21 chr5 54896958 54897392 -97639867 - LTR86C LTR ERVL -150 471 12 5 1003 209 176 0 38 chr5 54897637 54897690 -97639569 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1003 24 0 0 0 chr5 54897946 54897970 -97639289 + AT_rich Low_complexity Low_complexity 1 24 0 5 1003 285 276 41 49 chr5 54897970 54898092 -97639167 - Lx4B LINE L1 -12 7046 6926 5 1003 237 188 25 12 chr5 54898161 54898242 -97639017 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1003 3703 190 12 3 chr5 54898322 54898996 -97638263 - Lx5 LINE L1 -152 6898 6229 5 1003 1242 191 50 29 chr5 54898975 54899255 -97638004 - Lx5 LINE L1 -963 6087 5802 5 1003 4812 177 82 48 chr5 54899536 54900641 -97636618 + Lx2B LINE L1 5855 6997 -3 5 1003 716 236 139 8 chr5 54900711 54900963 -97636296 + L1MB1 LINE L1 5866 6150 -39 5 1003 981 318 40 0 chr5 54901111 54901385 -97635874 - B4A SINE B4 -2 290 6 5 1003 191 379 48 0 chr5 54903053 54903156 -97634103 - MIR SINE MIR -16 246 139 5 1003 1046 76 7 7 chr5 54903187 54903332 -97633927 - B1_Mus1 SINE Alu 0 148 4 5 1003 305 149 0 0 chr5 54903515 54903562 -97633697 - MLT2D LTR ERVL -2 558 512 5 1003 252 0 0 0 chr5 54903594 54903622 -97633637 + (TATG)n Simple_repeat Simple_repeat 4 31 0 5 1003 546 43 0 0 chr5 54903623 54903692 -97633567 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 5 1003 229 225 24 36 chr5 54903695 54903778 -97633481 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 5 1003 339 227 13 0 chr5 54903780 54903855 -97633404 - MT2B LTR ERVL -134 467 392 5 1003 21 0 0 0 chr5 54903895 54903916 -97633343 + AT_rich Low_complexity Low_complexity 1 21 0 5 1003 577 276 82 55 chr5 54903989 54904280 -97632979 - MLT2C1 LTR ERVL -96 301 3 5 1003 276 91 0 0 chr5 54904943 54904987 -97632272 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1003 1515 151 12 81 chr5 54905177 54905523 -97631736 + RLTRETN_Mm LTR ERVK 1 322 0 5 1003 22 35 0 0 chr5 54907112 54907141 -97630118 + AT_rich Low_complexity Low_complexity 1 29 0 5 1003 640 240 96 10 chr5 54907425 54907623 -97629636 - B3 SINE B2 -1 215 1 5 1003 711 307 35 62 chr5 54908339 54908657 -97628602 - ORR1E LTR MaLR 0 379 56 5 1003 1125 113 0 0 chr5 54908659 54908836 -97628423 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 1003 450 168 0 0 chr5 54908836 54908949 -97628310 + GA-rich Low_complexity Low_complexity 1 113 0 5 1003 947 82 0 29 chr5 54909000 54909138 -97628121 - B1_Mus1 SINE Alu 0 148 15 5 1003 229 298 107 53 chr5 54909187 54909318 -97627941 + ORR1E LTR MaLR 84 221 -138 5 1003 567 284 56 119 chr5 54909449 54909809 -97627450 - Lx8 LINE L1 -119 7354 7018 5 1003 292 350 0 0 chr5 54909935 54910035 -97627224 - PB1D10 SINE Alu -8 109 10 5 1003 21 0 0 0 chr5 54910290 54910311 -97626948 + AT_rich Low_complexity Low_complexity 1 21 0 5 1003 331 315 18 0 chr5 54910321 54910432 -97626827 + B3A SINE B2 1 113 -85 5 1003 9528 45 9 0 chr5 54911382 54913267 -97623992 - L1Md_F2 LINE L1 -2 6580 4678 5 1003 768 22 0 0 chr5 54913598 54913688 -97623571 + (TG)n Simple_repeat Simple_repeat 2 91 0 5 1003 2387 288 102 43 chr5 54914688 54914958 -97622301 - Lx8 LINE L1 -196 7277 6993 5 1003 747 22 0 0 chr5 54914958 54915047 -97622212 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 5 1003 2387 288 102 43 chr5 54915047 54915766 -97621493 - Lx8 LINE L1 -481 6992 6231 5 1003 574 130 0 15 chr5 54915787 54915920 -97621339 + (TCTA)n Simple_repeat Simple_repeat 4 134 0 5 1003 28 0 0 0 chr5 54916146 54916174 -97621085 + AT_rich Low_complexity Low_complexity 1 28 0 5 1003 279 0 0 0 chr5 54917327 54917358 -97619901 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1003 285 298 71 40 chr5 54917497 54917623 -97619636 - MIR SINE MIR -131 137 8 5 1003 26 74 0 0 chr5 54918071 54918125 -97619134 + AT_rich Low_complexity Low_complexity 1 54 0 5 1003 3261 51 2 7 chr5 54918125 54918542 -97618717 - L1Md_F2 LINE L1 0 6582 6168 5 1004 677 260 64 75 chr5 54919238 54919404 -97617855 + B3 SINE B2 2 163 -32 5 1004 477 97 0 0 chr5 54919404 54919476 -97617783 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 1004 480 260 64 75 chr5 54919476 54919496 -97617763 + B2_Mm2 SINE B2 164 185 -10 5 1004 396 0 0 0 chr5 54920630 54920674 -97616585 + (T)n Simple_repeat Simple_repeat 1 44 0 5 1004 180 333 0 0 chr5 54921360 54921408 -97615851 + MIRb SINE MIR 213 260 -8 5 1004 762 209 7 0 chr5 54921675 54921814 -97615445 - ORR1D1 LTR MaLR 0 374 235 5 1004 604 293 37 5 chr5 54921810 54921995 -97615264 - RMER20B LTR ERVK -21 606 416 5 1004 1065 128 4 19 chr5 54921995 54922186 -97615073 + B2_Mm2 SINE B2 1 193 0 5 1004 786 206 202 12 chr5 54922201 54922550 -97614709 - RMER20B LTR ERVK -202 425 11 5 1004 495 238 165 5 chr5 54922557 54922759 -97614500 - ORR1D1 LTR MaLR -119 265 1 5 1004 1030 121 0 32 chr5 54922880 54923034 -97614225 + B1_Mur4 SINE Alu 2 150 0 5 1004 676 284 44 58 chr5 54923482 54923826 -97613433 - RLTR15 LTR ERVK -20 339 1 5 1004 209 321 93 21 chr5 54923870 54924010 -97613249 - L2 LINE L2 -734 2685 2536 5 1004 421 271 54 76 chr5 54924328 54924643 -97612616 - L1MEf LINE L1 -4890 1310 1003 5 1004 3541 56 18 0 chr5 54924672 54925121 -97612138 + L1Md_F3 LINE L1 6114 6570 -14 5 1004 288 0 0 0 chr5 54926245 54926277 -97610982 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 5 1004 262 300 9 9 chr5 54928510 54928621 -97608638 - L1MCa LINE L1 -4498 2010 1900 5 1004 789 49 24 16 chr5 54929174 54929299 -97607960 - L1Md_F2 LINE L1 0 6582 6457 5 1004 189 0 0 0 chr5 54929465 54929486 -97607773 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 5 1004 1208 32 0 19 chr5 54929493 54929652 -97607607 - L1Md_F3 LINE L1 -16 6568 6413 5 1004 25 0 0 0 chr5 54930204 54930229 -97607030 + AT_rich Low_complexity Low_complexity 1 25 0 6 1004 30 89 0 0 chr5 54930584 54930663 -97606596 + AT_rich Low_complexity Low_complexity 1 79 0 6 1004 368 314 12 152 chr5 54933300 54933465 -97603794 - RSINE1 SINE B4 0 165 24 6 1004 30 69 0 0 chr5 54933475 54933533 -97603726 + AT_rich Low_complexity Low_complexity 1 58 0 6 1004 22 56 0 0 chr5 54933599 54933635 -97603624 + AT_rich Low_complexity Low_complexity 1 36 0 6 1004 412 288 129 44 chr5 54933816 54934041 -97603218 + B4A SINE B4 1 244 -48 6 1004 552 73 0 0 chr5 54936084 54936166 -97601093 + (CA)n Simple_repeat Simple_repeat 2 83 0 6 1004 349 393 22 14 chr5 54936910 54937186 -97600073 + ERVL-int LTR ERVL 2922 3199 -2558 6 1004 455 68 0 0 chr5 54937426 54937485 -97599774 - L1_Mm LINE L1 -1790 4093 4035 6 1004 5523 77 5 4 chr5 54937485 54938224 -97599035 + L1_Mus1 LINE L1 5827 6566 -1 6 1004 227 244 126 34 chr5 54939182 54939301 -97597958 - RLTR40 LTR ERVK -194 623 494 6 1004 688 312 88 17 chr5 54939328 54939690 -97597569 + L1MC1 LINE L1 5930 6317 -16 6 1004 205 219 59 59 chr5 54939726 54939794 -97597465 - MER5A DNA MER1_type -67 122 55 6 1004 2994 65 10 0 chr5 54939806 54940192 -97597067 - RLTR10 LTR ERVK 0 390 1 6 1004 8921 12 0 0 chr5 54940192 54941189 -97596070 - RLTR10-int LTR ERVK -1 1986 990 6 1004 358 269 31 43 chr5 54941271 54941434 -97595825 - RLTR10-int LTR ERVK -5987 1594 1434 6 1004 7796 38 0 71 chr5 54941478 54942533 -97594726 - RLTR10-int LTR ERVK -995 992 13 6 1004 254 167 0 69 chr5 54942534 54942592 -97594667 - RLTR10-int LTR ERVK -1931 56 3 6 1004 3013 62 10 0 chr5 54942594 54942980 -97594279 - RLTR10 LTR ERVK 0 390 1 6 1004 8729 15 8 0 chr5 54942980 54943969 -97593290 - RLTR10-int LTR ERVK -1 1986 990 6 1004 314 269 31 43 chr5 54944051 54944214 -97593045 - RLTR10-int LTR ERVK -5987 1594 1434 6 1004 7437 37 0 71 chr5 54944258 54945313 -97591946 - RLTR10-int LTR ERVK -995 992 13 6 1004 3054 60 10 0 chr5 54945374 54945760 -97591499 - RLTR10 LTR ERVK 0 390 1 6 1004 422 289 59 7 chr5 54947221 54947374 -97589885 - RSINE1 SINE B4 0 165 5 6 1004 181 283 83 0 chr5 54947883 54947943 -97589316 - L4 LINE RTE -199 1830 1766 6 1004 24 0 0 0 chr5 54947993 54948017 -97589242 + AT_rich Low_complexity Low_complexity 1 24 0 6 1004 1097 84 45 0 chr5 54948081 54948236 -97589023 + L1_Mus1 LINE L1 6405 6566 -1 6 1004 5536 59 18 3 chr5 54949014 54949743 -97587516 + L1Md_F3 LINE L1 5845 6584 0 6 1004 369 0 0 0 chr5 54950220 54950261 -97586998 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1004 195 125 0 0 chr5 54950895 54950935 -97586324 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 6 1004 8033 25 0 0 chr5 54950958 54952525 -97584734 - L1Md_T LINE L1 -1 6581 5016 6 1004 21 0 0 0 chr5 54952525 54952546 -97584713 + AT_rich Low_complexity Low_complexity 1 21 0 6 1004 36716 52 6 8 chr5 54952555 54958869 -97578390 - L1Md_T LINE L1 0 6582 281 6 1004 705 242 0 0 chr5 54958950 54959078 -97578181 - B1_Mus2 SINE Alu -10 137 10 6 1004 295 333 22 72 chr5 54958955 54959094 -97578165 - B4 SINE B4 -81 211 80 6 1004 574 286 28 22 chr5 54959286 54959468 -97577791 + MLT1A0 LTR MaLR 42 224 -141 6 1004 313 241 34 77 chr5 54961170 54961287 -97575972 + RMER6C LTR ERVK 1 112 -578 6 1004 28755 69 2 7 chr5 54961725 54962637 -97574622 - L1_Mus2 LINE L1 -2 6564 5657 6 1004 3201 56 5 0 chr5 54962637 54963031 -97574228 + MTA_Mm LTR MaLR 1 396 0 6 1004 28755 111 13 7 chr5 54963031 54967167 -97570092 - L1_Mus2 LINE L1 -226 5657 1484 6 1004 4482 103 20 87 chr5 54967167 54967972 -97569287 - RMER17A LTR ERVK 0 751 1 6 1004 28755 133 13 68 chr5 54967972 54968738 -97568521 - L1_Mus2 LINE L1 -4400 1483 770 6 1004 2284 201 66 27 chr5 54969247 54969795 -97567464 + Lx5 LINE L1 6478 7046 -4 6 1004 2218 157 74 37 chr5 54969801 54969999 -97567260 + RMER6C LTR ERVK 161 362 -328 6 1004 191 36 36 0 chr5 54969999 54970027 -97567232 + (CAGTG)n Simple_repeat Simple_repeat 2 30 0 6 1004 2218 157 74 37 chr5 54970027 54970339 -97566920 + RMER6C LTR ERVK 363 690 0 6 1004 223 284 25 14 chr5 54970831 54970902 -97566357 + MIRb SINE MIR 16 95 -173 6 1004 305 145 0 13 chr5 54971193 54971270 -97565989 + (CAAA)n Simple_repeat Simple_repeat 1 76 0 6 1004 278 202 124 65 chr5 54971949 54972134 -97565125 + L1MC2 LINE L1 5879 6074 -270 6 1004 372 343 131 23 chr5 54972968 54973395 -97563864 + L1MEf LINE L1 1622 2094 -4106 6 1004 22 0 0 0 chr5 54973846 54973868 -97563391 + AT_rich Low_complexity Low_complexity 1 22 0 6 1004 2557 195 39 105 chr5 54974193 54974908 -97562351 + RMER6C LTR ERVK 1 668 -22 6 1004 26 30 0 0 chr5 54975850 54975883 -97561376 + AT_rich Low_complexity Low_complexity 1 33 0 6 1004 241 88 0 0 chr5 54976231 54976265 -97560994 + RMER19C LTR ERVK 1 34 -577 6 1004 231 286 24 83 chr5 54976272 54976356 -97560903 + RMER19C LTR ERVK 205 283 -619 6 1004 702 0 0 0 chr5 54976370 54976448 -97560811 + (TTC)n Simple_repeat Simple_repeat 2 79 0 6 1004 5926 53 18 3 chr5 54976448 54977186 -97560073 - L1Md_F2 LINE L1 -18 6564 5816 6 1004 3236 49 0 0 chr5 54977186 54977596 -97559663 + L1Md_F2 LINE L1 5395 5804 -79 6 1004 1294 186 19 125 chr5 54977596 54977915 -97559344 + RMER19C LTR ERVK 327 611 0 6 1004 286 147 126 0 chr5 54978497 54978592 -97558667 + L1_Mus3 LINE L1 6485 6591 -47 6 1004 214 194 0 0 chr5 54978592 54978628 -97558631 + polypurine Low_complexity Low_complexity 6 41 0 6 1004 457 151 50 0 chr5 54978628 54978767 -97558492 + L1_Mus3 LINE L1 6491 6636 -2 6 1004 232 269 112 63 chr5 54979090 54979212 -97558047 - ORR1E LTR MaLR -206 153 24 6 1004 270 0 0 0 chr5 54979212 54979242 -97558017 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1004 232 269 112 63 chr5 54979242 54979262 -97557997 - ORR1E LTR MaLR -336 23 4 6 1004 207 69 0 0 chr5 54979394 54979423 -97557836 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1004 686 12 12 0 chr5 54979423 54979505 -97557754 + (GA)n Simple_repeat Simple_repeat 2 85 0 6 1004 291 329 12 0 chr5 54979673 54979755 -97557504 - MLT1E3 LTR MaLR -402 222 140 6 1004 1485 151 171 0 chr5 54980466 54980758 -97556501 - Lx4A LINE L1 -421 6637 6296 6 1004 1848 150 62 44 chr5 54980758 54981163 -97556096 + Lx4A LINE L1 6647 7058 0 6 1004 273 167 0 0 chr5 54981188 54981242 -97556017 + A-rich Low_complexity Low_complexity 1 54 0 6 1004 534 224 29 17 chr5 54983505 54983678 -97553581 + L1_Mur3 LINE L1 4799 4973 -907 6 1004 284 150 0 48 chr5 54983882 54983966 -97553293 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 6 1004 360 313 94 64 chr5 54984148 54984476 -97552783 - L1M4 LINE L1 -2582 3564 3227 6 1004 730 336 30 22 chr5 54985144 54985549 -97551710 + Lx7 LINE L1 6901 7308 -388 6 1004 201 176 0 0 chr5 54985607 54985641 -97551618 + T-rich Low_complexity Low_complexity 1 34 0 6 1004 297 221 96 24 chr5 54985764 54985931 -97551328 + MER33 DNA MER1_type 137 315 -9 6 1004 340 349 87 0 chr5 54986372 54986498 -97550761 - B1_Mur1 SINE Alu -12 137 1 6 1004 226 326 10 40 chr5 54986409 54986508 -97550751 - B4A SINE B4 -119 173 78 6 1004 2051 134 12 12 chr5 54987052 54987398 -97549861 - Lx3B LINE L1 -22 6951 6606 6 1004 512 236 12 128 chr5 54987399 54987618 -97549641 + MTEb LTR MaLR 153 379 0 6 1004 255 294 46 2 chr5 54988024 54988141 -97549118 - L2c LINE L2 -260 3166 3044 6 1004 486 46 0 0 chr5 54988679 54988744 -97548515 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1004 576 0 0 0 chr5 54990298 54990362 -97546897 + (TC)n Simple_repeat Simple_repeat 2 65 0 6 1004 1305 230 129 11 chr5 54990399 54990755 -97546504 + MTD LTR MaLR 2 399 -20 6 1004 251 327 89 18 chr5 54990837 54990949 -97546310 + PB1 SINE Alu 1 120 0 6 1004 23 33 0 0 chr5 54992719 54992749 -97544510 + AT_rich Low_complexity Low_complexity 1 30 0 6 1004 310 85 0 33 chr5 54992839 54992900 -97544359 + (TTA)n Simple_repeat Simple_repeat 1 59 0 6 1004 4310 118 33 13 chr5 54992900 54993572 -97543687 + Lx LINE L1 5970 6654 0 6 1004 333 278 84 34 chr5 54995034 54995153 -97542106 - RSINE1 SINE B4 -28 137 13 6 1004 2094 219 7 45 chr5 54995536 54995962 -97541297 + MTC LTR MaLR 11 420 -1 6 1004 297 0 0 0 chr5 54995962 54995995 -97541264 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1004 8160 20 0 0 chr5 54996432 54998081 -97539178 - L1Md_T LINE L1 -2 6580 4932 6 1004 272 130 37 0 chr5 54998270 54998324 -97538935 + GA-rich Low_complexity Low_complexity 2 57 0 6 1004 498 224 101 127 chr5 54999212 54999401 -97537858 + B3A SINE B2 1 184 -14 6 1004 270 0 0 0 chr5 55001940 55001970 -97535289 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1004 310 389 37 56 chr5 55002352 55002567 -97534692 + MIRc SINE MIR 40 250 -18 2 1004 24 0 0 0 chr5 55002654 55002678 -97534581 + AT_rich Low_complexity Low_complexity 1 24 0 3 1004 180 0 0 0 chr5 55004790 55004810 -97532449 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1004 576 42 0 0 chr5 55005303 55005374 -97531885 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1004 488 120 10 0 chr5 55006180 55006280 -97530979 + (GA)n Simple_repeat Simple_repeat 2 102 0 6 1004 5405 116 21 58 chr5 55007622 55008558 -97528701 - RLTR13D6 LTR ERVK 0 902 1 7 1004 297 0 0 0 chr5 55008690 55008723 -97528536 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1004 201 39 0 0 chr5 55008733 55008759 -97528500 + (TC)n Simple_repeat Simple_repeat 1 26 0 9 1004 22 35 0 0 chr5 55008791 55008820 -97528439 + AT_rich Low_complexity Low_complexity 1 29 0 1 1004 6535 247 69 26 chr5 55008945 55010728 -97526531 - Lx6 LINE L1 -3 7457 5598 1 1004 6501 169 40 27 chr5 55010789 55013036 -97524223 + Lx3C LINE L1 4696 6974 -2 1 1004 496 258 76 31 chr5 55013043 55013267 -97523992 + L1M2 LINE L1 5318 5551 -761 1 1004 384 22 0 0 chr5 55013475 55013520 -97523739 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 1 1004 477 279 23 8 chr5 55013524 55013654 -97523605 - B1F SINE Alu -17 132 1 1 1004 351 370 32 19 chr5 55014477 55014634 -97522625 + MIRb SINE MIR 27 185 -83 1 1004 266 0 29 0 chr5 55015540 55015574 -97521685 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1004 462 315 107 13 chr5 55016257 55016482 -97520777 + MLT2C1 LTR ERVL 18 263 -134 1 1004 357 354 65 34 chr5 55017877 55018140 -97519119 - HERV16-int LTR ERVL -3119 1877 1607 1 1004 747 50 0 0 chr5 55018886 55018986 -97518273 + (TC)n Simple_repeat Simple_repeat 2 101 0 2 1004 416 349 30 0 chr5 55018989 55019121 -97518138 - B1F SINE Alu -11 138 3 2 1004 235 392 12 95 chr5 55019121 55019158 -97518101 - ID_B1 SINE B4 -11 213 59 2 1004 3836 253 97 20 chr5 55019519 55020653 -97516606 - Lx6 LINE L1 -13 7447 6227 2 1004 7034 120 28 9 chr5 55020749 55021995 -97515264 - Lx LINE L1 -4 6650 5357 2 1004 351 141 0 0 chr5 55023021 55023085 -97514174 + (T)n Simple_repeat Simple_repeat 1 64 0 2 1004 459 0 0 0 chr5 55023901 55023952 -97513307 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1004 235 152 22 0 chr5 55025215 55025261 -97511998 + CT-rich Low_complexity Low_complexity 2 48 0 2 1004 5276 176 27 10 chr5 55025567 55027055 -97510204 - Lx5 LINE L1 -420 6630 5112 2 1004 1692 146 0 4 chr5 55027063 55027338 -97509921 + L1_Mur2 LINE L1 4652 4925 -952 2 1004 232 214 81 54 chr5 55027338 55027412 -97509847 - RLTR16 LTR ERVK 0 505 430 3 1004 2198 179 52 23 chr5 55027409 55027888 -97509371 - RLTR16 LTR ERVK -12 493 1 3 1004 867 201 16 5 chr5 55027890 55028075 -97509184 + L1_Mur2 LINE L1 4922 5108 -769 2 1004 348 190 55 77 chr5 55028122 55028213 -97509046 - RMER12 LTR ERVK -276 1046 958 3 1004 1947 49 16 4 chr5 55028321 55028569 -97508690 - L1Md_F2 LINE L1 0 6582 6332 3 1004 2566 57 3 0 chr5 55028569 55028885 -97508374 + L1Md_F2 LINE L1 6066 6382 -200 3 1004 518 243 61 164 chr5 55028911 55029271 -97507988 - RLTR22_Mus LTR ERVK -1055 753 431 3 1004 378 280 82 15 chr5 55029273 55029407 -97507852 - Lx4B LINE L1 -789 6269 6127 3 1004 242 302 144 31 chr5 55029427 55029511 -97507748 + MLT1B LTR MaLR 159 248 -142 3 1004 294 29 0 0 chr5 55029511 55029546 -97507713 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 3 1004 242 302 144 31 chr5 55029546 55029656 -97507603 + MLT1B LTR MaLR 249 374 -16 3 1004 3693 56 39 0 chr5 55029852 55030336 -97506923 - L1_Mus3 LINE L1 -463 6175 5673 3 1004 3057 80 56 2 chr5 55030337 55030787 -97506472 + L1_Mus3 LINE L1 6165 6638 0 3 1004 375 270 35 42 chr5 55031942 55032085 -97505174 + B4A SINE B4 2 143 -149 3 1004 238 315 141 8 chr5 55032207 55032335 -97504924 - MLT1A0 LTR MaLR -187 178 34 4 1004 210 105 0 0 chr5 55033462 55033500 -97503759 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1004 1074 255 51 11 chr5 55033878 55034152 -97503107 + MTD LTR MaLR 130 414 -5 4 1004 297 0 0 0 chr5 55035047 55035080 -97502179 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1004 315 0 0 0 chr5 55035082 55035117 -97502142 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1004 361 275 59 20 chr5 55035221 55035430 -97501829 - L1_Mur3 LINE L1 -322 5558 5332 4 1004 448 273 122 35 chr5 55035441 55035752 -97501507 + L1MA4 LINE L1 5580 5917 -383 4 1004 316 356 38 89 chr5 55036032 55036363 -97500896 + RSINE1 SINE B4 2 272 -20 4 1004 349 259 103 8 chr5 55037339 55037456 -97499803 - MLT1A1 LTR MaLR -171 237 110 4 1004 523 283 5 48 chr5 55037844 55038033 -97499226 + CR1_Mam LINE CR1 1402 1582 -622 4 1004 180 0 0 0 chr5 55038230 55038250 -97499009 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5 1004 1283 216 168 28 chr5 55038944 55039302 -97497957 - MTD LTR MaLR -2 417 10 5 1004 321 89 0 0 chr5 55039382 55039427 -97497832 + (TTA)n Simple_repeat Simple_repeat 1 45 0 5 1004 336 48 0 0 chr5 55040128 55040170 -97497089 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1004 474 148 99 0 chr5 55040313 55040414 -97496845 - L1_Mur2 LINE L1 -1159 4718 4608 5 1004 3583 163 17 30 chr5 55040414 55041135 -97496124 - L1_Mur2 LINE L1 -1460 4417 3707 5 1004 7362 73 5 10 chr5 55041140 55042219 -97495040 - L1_Mus2 LINE L1 0 6566 5493 5 1004 2221 163 68 80 chr5 55042220 55042780 -97494479 - L1_Mur2 LINE L1 -2155 3722 3170 5 1004 609 188 7 14 chr5 55043434 55043580 -97493679 - L1_Mur2 LINE L1 -2742 3138 2994 5 1004 7864 49 5 8 chr5 55043592 55044628 -97492631 - L1_Mus1 LINE L1 0 6567 5534 5 1004 5018 109 2 57 chr5 55044621 55045440 -97491819 + L1_Mus1 LINE L1 4763 5536 -347 5 1004 5368 185 33 15 chr5 55045446 55046604 -97490655 - L1_Mur2 LINE L1 -2875 3002 1824 5 1004 311 188 106 0 chr5 55046595 55046680 -97490579 - L1_Mur2 LINE L1 -6038 1048 955 5 1004 562 250 110 0 chr5 55050061 55050225 -97487034 - B3A SINE B2 -16 182 1 5 1005 563 51 13 0 chr5 55050657 55050736 -97486523 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 5 1005 238 121 0 147 chr5 55051627 55051695 -97485564 + Lx7 LINE L1 7631 7688 -8 5 1005 376 245 42 150 chr5 55051701 55051941 -97485318 + L1MC4 LINE L1 7008 7221 -821 6 1005 450 344 57 26 chr5 55052260 55052645 -97484614 + L1MC4 LINE L1 7247 7643 -399 6 1005 315 292 0 0 chr5 55053944 55054016 -97483243 - B4 SINE B4 -214 78 7 6 1005 3758 250 28 8 chr5 55054425 55055312 -97481947 + Lx7 LINE L1 5911 6815 -881 6 1005 2483 230 118 41 chr5 55055830 55056472 -97480787 + Lx7 LINE L1 6831 7504 -192 6 1005 207 0 0 0 chr5 55056472 55056495 -97480764 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1005 2483 230 118 41 chr5 55056495 55056609 -97480650 + Lx7 LINE L1 7505 7645 -51 6 1005 1518 186 53 18 chr5 55056617 55056956 -97480303 + ORR1B1 LTR MaLR 41 391 -3 6 1005 27 0 0 0 chr5 55056971 55056998 -97480261 + AT_rich Low_complexity Low_complexity 1 27 0 6 1005 277 352 71 33 chr5 55057245 55057514 -97479745 + LTR53 LTR ERVL 41 349 -170 6 1005 534 16 0 0 chr5 55057540 55057603 -97479656 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1005 268 135 30 50 chr5 55060383 55060484 -97476775 + (TTATA)n Simple_repeat Simple_repeat 1 99 0 6 1005 258 266 35 60 chr5 55061272 55061388 -97475871 + L1MEf LINE L1 1849 1961 -4281 6 1005 30 27 0 0 chr5 55061471 55061508 -97475751 + AT_rich Low_complexity Low_complexity 1 37 0 7 1005 347 312 76 4 chr5 55061989 55062214 -97475045 + L1MEf LINE L1 2718 2958 -3188 6 1005 218 255 7 62 chr5 55062323 55062469 -97474790 + A-rich Low_complexity Low_complexity 2 139 0 7 1005 790 258 31 0 chr5 55062491 55062685 -97474574 - B3 SINE B2 -15 201 2 7 1005 414 0 0 0 chr5 55062822 55062868 -97474391 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1005 809 227 62 5 chr5 55063194 55063389 -97473870 + B3 SINE B2 11 216 0 7 1005 24 67 0 0 chr5 55064008 55064053 -97473206 + AT_rich Low_complexity Low_complexity 1 45 0 7 1005 627 57 0 0 chr5 55064930 55065018 -97472241 + (CA)n Simple_repeat Simple_repeat 1 88 0 7 1005 258 317 68 19 chr5 55065545 55065648 -97471611 - MLT1H LTR MaLR -383 166 59 7 1005 305 274 42 0 chr5 55066850 55066945 -97470314 + B1_Mur2 SINE Alu 50 148 -1 7 1005 201 351 8 50 chr5 55067409 55067529 -97469730 - MIRb SINE MIR -46 222 108 7 1005 194 0 0 37 chr5 55068046 55068073 -97469186 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1005 234 0 0 0 chr5 55068073 55068098 -97469161 + (GA)n Simple_repeat Simple_repeat 1 26 0 8 1005 894 125 24 12 chr5 55068393 55068563 -97468696 + CT-rich Low_complexity Low_complexity 3 174 0 8 1005 476 176 0 89 chr5 55068628 55068740 -97468519 - B1_Mur4 SINE Alu -8 142 41 8 1005 183 114 0 0 chr5 55070042 55070077 -97467182 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 8 1005 243 0 0 0 chr5 55070088 55070115 -97467144 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1005 236 274 40 14 chr5 55070118 55070192 -97467067 - B4A SINE B4 -201 91 16 8 1005 308 353 26 8 chr5 55070227 55070344 -97466915 - B1F SINE Alu -8 141 23 8 1005 26 30 0 0 chr5 55071292 55071325 -97465934 + AT_rich Low_complexity Low_complexity 1 33 0 8 1005 225 331 110 61 chr5 55073193 55073357 -97463902 + MIR3 SINE MIR 37 208 0 8 1005 767 292 121 11 chr5 55073934 55074219 -97463040 - Lx8 LINE L1 -131 7342 7013 9 1005 1549 235 18 12 chr5 55074982 55075318 -97461941 + ORR1D1 LTR MaLR 37 374 0 9 1005 185 348 29 0 chr5 55076958 55077027 -97460232 - MIR SINE MIR -134 128 58 9 1005 849 102 0 0 chr5 55077425 55077543 -97459716 - B1_Mus2 SINE Alu -25 122 5 9 1005 213 196 0 0 chr5 55079359 55079405 -97457854 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1005 373 250 25 74 chr5 55079488 55079609 -97457650 - Lx8 LINE L1 -128 7345 7231 9 1005 36315 28 4 7 chr5 55080160 55085144 -97452115 + L1Md_T LINE L1 630 5586 -297 9 1005 8385 33 4 0 chr5 55085144 55086136 -97451123 + L1Md_T LINE L1 5587 6582 0 9 1005 23 0 0 0 chr5 55086637 55086660 -97450599 + AT_rich Low_complexity Low_complexity 1 23 0 9 1005 221 402 9 28 chr5 55087946 55088123 -97449136 + MER5B DNA MER1_type 4 173 -16 9 1005 186 345 122 0 chr5 55088829 55088977 -97448282 + L4 LINE RTE 145 310 -1719 9 1005 279 296 90 48 chr5 55088987 55089175 -97448084 - B3A SINE B2 -1 197 2 1 1005 1061 97 7 0 chr5 55089380 55089519 -97447740 + B1_Mus1 SINE Alu 1 140 -8 1 1005 222 37 0 0 chr5 55089519 55089546 -97447713 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1005 2051 328 53 36 chr5 55089892 55090887 -97446372 - Lx9 LINE L1 -292 7352 6341 1 1005 655 333 6 0 chr5 55091421 55091598 -97445661 + ID_B1 SINE B4 4 181 -43 1 1005 2142 145 10 8 chr5 55091642 55092025 -97445234 + Lx2 LINE L1 5908 6291 -706 1 1005 2198 68 32 19 chr5 55092026 55092339 -97444920 + IAPLTR2b LTR ERVK 1 317 -10 1 1005 802 142 193 24 chr5 55092354 55092520 -97444739 + Lx2 LINE L1 6288 6481 -519 1 1005 7736 68 4 3 chr5 55092520 55094110 -97443149 - L1Md_F2 LINE L1 0 6582 4998 1 1005 3287 143 4 20 chr5 55094110 55094654 -97442605 + Lx LINE L1 6120 6654 0 1 1005 286 343 18 18 chr5 55095192 55095302 -97441957 + L2 LINE L2 2700 2809 -610 1 1005 935 214 48 10 chr5 55095742 55095950 -97441309 - B3 SINE B2 0 216 1 1 1005 288 0 0 0 chr5 55096011 55096043 -97441216 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 1 1005 1053 82 0 0 chr5 55096043 55096178 -97441081 - B1_Mm SINE Alu -12 135 1 1 1005 572 107 8 94 chr5 55096820 55096954 -97440305 + Lx LINE L1 6283 6382 -272 1 1005 1903 134 12 39 chr5 55097054 55097389 -97439870 - Lx LINE L1 0 6654 6329 1 1005 2295 146 2 36 chr5 55097398 55097826 -97439433 - Lx2B LINE L1 -1038 5962 5542 1 1005 1320 275 53 36 chr5 55097883 55098386 -97438873 - Lx9 LINE L1 -248 7396 6722 1 1005 627 14 0 0 chr5 55098778 55098850 -97438409 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 1 1005 257 291 141 28 chr5 55098982 55099159 -97438100 - MIR SINE MIR -46 216 20 1 1005 462 18 0 0 chr5 55100472 55100527 -97436732 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1005 585 0 0 0 chr5 55100529 55100594 -97436665 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1005 809 277 20 0 chr5 55101253 55101448 -97435811 + B3 SINE B2 8 206 -10 1 1005 203 189 0 0 chr5 55101459 55101496 -97435763 + A-rich Low_complexity Low_complexity 1 37 0 1 1005 281 297 18 123 chr5 55101701 55101920 -97435339 - L1MB8 LINE L1 -45 6133 5938 1 1005 3162 258 100 69 chr5 55103673 55105167 -97432092 - RMER1A Other Other 0 1030 1 1 1005 310 324 7 34 chr5 55105598 55105745 -97431514 - L1MA5 LINE L1 -284 6016 5874 1 1005 252 86 0 0 chr5 55105944 55105979 -97431280 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1005 370 319 0 16 chr5 55106058 55106179 -97431080 - Lx9 LINE L1 -310 7334 7216 1 1005 336 218 54 12 chr5 55106194 55106308 -97430951 - Lx4B LINE L1 -5 7053 6883 1 1005 5042 153 9 9 chr5 55106310 55107208 -97430051 - L1_Mur1 LINE L1 -978 4899 4002 1 1005 8147 187 43 24 chr5 55107206 55108994 -97428265 - L1_Mur1 LINE L1 -2672 3205 1368 1 1005 2834 33 191 0 chr5 55108994 55109360 -97427899 - RLTR10C LTR ERVK 0 436 1 1 1005 8147 196 22 29 chr5 55109360 55109870 -97427389 - L1_Mur1 LINE L1 -4510 1367 867 1 1005 431 305 18 24 chr5 55110128 55110296 -97426963 - Lx9 LINE L1 -418 7226 7060 1 1005 263 203 34 0 chr5 55110333 55110392 -97426867 - L1MA5 LINE L1 -543 5754 5694 1 1005 341 283 98 30 chr5 55110403 55110426 -97426833 - L1MA5 LINE L1 -629 5671 5649 1 1005 343 100 29 0 chr5 55110426 55110496 -97426763 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 1 1005 368 279 76 34 chr5 55110496 55110738 -97426521 - L1MA5 LINE L1 -652 5648 5388 1 1005 21 36 0 0 chr5 55111108 55111136 -97426123 + AT_rich Low_complexity Low_complexity 1 28 0 1 1005 462 18 0 0 chr5 55111563 55111618 -97425641 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1005 832 307 39 0 chr5 55111772 55111977 -97425282 - ID_B1 SINE B4 -5 219 7 1 1005 21 71 0 0 chr5 55112719 55112761 -97424498 + AT_rich Low_complexity Low_complexity 1 42 0 1 1005 24 0 0 0 chr5 55112788 55112812 -97424447 + AT_rich Low_complexity Low_complexity 1 24 0 1 1005 236 152 15 0 chr5 55115019 55115085 -97422174 + CT-rich Low_complexity Low_complexity 2 68 0 1 1005 666 343 42 53 chr5 55115274 55115536 -97421723 + B4 SINE B4 6 264 -28 1 1005 464 140 0 92 chr5 55115779 55115905 -97421354 + Lx3A LINE L1 6853 6967 -14 1 1005 333 0 0 0 chr5 55115905 55115942 -97421317 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 1005 464 140 0 92 chr5 55115942 55115957 -97421302 + Lx3A LINE L1 6968 6981 0 1 1005 251 114 23 0 chr5 55116043 55116087 -97421172 + (GAAAA)n Simple_repeat Simple_repeat 1 45 0 1 1005 25 51 0 0 chr5 55116238 55116277 -97420982 + AT_rich Low_complexity Low_complexity 1 39 0 1 1005 1172 243 115 0 chr5 55116407 55116711 -97420548 + MTD LTR MaLR 13 351 -68 1 1005 988 124 6 6 chr5 55116716 55116886 -97420373 + (TTCC)n Simple_repeat Simple_repeat 3 172 0 1 1005 198 0 0 0 chr5 55116886 55116908 -97420351 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1005 1030 205 101 30 chr5 55117045 55117312 -97419947 - RMER1C Other Other -1 1341 1056 1 1005 21 36 0 0 chr5 55118465 55118493 -97418766 + AT_rich Low_complexity Low_complexity 1 28 0 1 1005 24 32 0 0 chr5 55118575 55118606 -97418653 + AT_rich Low_complexity Low_complexity 1 31 0 1 1005 24 0 0 0 chr5 55120230 55120254 -97417005 + AT_rich Low_complexity Low_complexity 1 24 0 1 1005 201 250 18 18 chr5 55121030 55121087 -97416172 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1005 499 312 75 34 chr5 55121128 55121393 -97415866 - B4A SINE B4 -14 278 3 1 1005 992 285 49 41 chr5 55122197 55122646 -97414613 - RMER15 LTR ERVL 0 575 65 1 1005 510 283 0 0 chr5 55123478 55123584 -97413675 + B3 SINE B2 1 106 -110 1 1005 1091 124 0 6 chr5 55123819 55123997 -97413262 + (TTTTC)n Simple_repeat Simple_repeat 4 180 0 1 1005 4142 153 69 3 chr5 55124001 55124723 -97412536 - Lx4A LINE L1 -3 7055 6286 1 1005 5415 126 21 5 chr5 55125395 55126243 -97411016 + Lx2 LINE L1 6135 6996 -1 1 1005 429 326 74 30 chr5 55127182 55127413 -97409846 + LTR16A1 LTR ERVL 216 456 0 1 1005 201 268 22 109 chr5 55127414 55127506 -97409753 + L2c LINE L2 3303 3386 -1 1 1005 248 365 10 0 chr5 55127561 55127665 -97409594 - MIR SINE MIR -1 261 157 1 1005 443 214 1 0 chr5 55127754 55127839 -97409420 + B1_Mur1 SINE Alu 56 143 -6 1 1005 528 111 0 0 chr5 55127840 55127921 -97409338 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 1 1005 22 0 0 0 chr5 55128953 55128975 -97408284 + AT_rich Low_complexity Low_complexity 1 22 0 1 1005 324 0 0 0 chr5 55129203 55129239 -97408020 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1005 592 345 32 5 chr5 55129592 55129813 -97407446 + Charlie2b DNA MER1_type 96 322 -2460 1 1005 249 312 52 31 chr5 55129841 55130033 -97407226 + Charlie2b DNA MER1_type 1801 1996 -786 1 1005 22 35 0 0 chr5 55130807 55130836 -97406423 + AT_rich Low_complexity Low_complexity 1 29 0 1 1005 23 0 0 0 chr5 55131054 55131077 -97406182 + AT_rich Low_complexity Low_complexity 1 23 0 1 1005 196 316 90 26 chr5 55131432 55131510 -97405749 + MIRc SINE MIR 60 142 -126 1 1005 225 283 0 0 chr5 55132296 55132349 -97404910 + Charlie14a DNA MER1_type 181 233 -931 1 1005 21 0 0 0 chr5 55132758 55132779 -97404480 + AT_rich Low_complexity Low_complexity 1 21 0 1 1005 623 293 62 14 chr5 55132854 55133062 -97404197 + Lx8 LINE L1 6600 6817 -656 1 1005 3171 34 0 0 chr5 55133129 55133507 -97403752 + L1Md_A LINE L1 6205 6582 0 1 1005 323 406 35 4 chr5 55133609 55133866 -97403393 + Lx8 LINE L1 6972 7236 -237 1 1005 272 203 195 40 chr5 55134087 55134236 -97403023 + L1M3 LINE L1 4311 4482 -1658 1 1005 486 306 20 7 chr5 55134529 55134677 -97402582 + Lx8 LINE L1 6352 6501 -972 1 1005 29 90 0 0 chr5 55135811 55135889 -97401370 + AT_rich Low_complexity Low_complexity 1 78 0 1 1005 323 250 79 50 chr5 55136105 55136206 -97401053 - B4A SINE B4 -10 282 179 1 1005 485 225 42 0 chr5 55136293 55136435 -97400824 + Lx7 LINE L1 5682 5829 -1867 1 1005 1589 244 80 0 chr5 55136449 55136826 -97400433 - MTD LTR MaLR 0 419 13 1 1005 1200 68 11 6 chr5 55137163 55137340 -97399919 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1 1005 405 310 215 26 chr5 55137395 55137660 -97399599 + Lx8 LINE L1 6210 6524 -949 1 1005 319 351 67 33 chr5 55138730 55138910 -97398349 + L3 LINE CR1 4172 4357 -132 1 1005 316 282 116 9 chr5 55140278 55140428 -97396831 - MIRb SINE MIR -95 173 1 1 1005 301 304 76 93 chr5 55140507 55140743 -97396516 - ORR1E LTR MaLR -51 308 77 1 1005 21 0 0 0 chr5 55141429 55141450 -97395809 + AT_rich Low_complexity Low_complexity 1 21 0 1 1005 508 325 50 10 chr5 55141456 55141658 -97395601 - B3 SINE B2 -5 211 2 1 1005 397 312 0 35 chr5 55141841 55141957 -97395302 + B3A SINE B2 2 113 -85 1 1005 1197 217 141 89 chr5 55142189 55142542 -97394717 - RMER13A LTR ERVK -277 631 212 1 1005 2353 91 45 3 chr5 55142542 55142874 -97394385 - ORR1A1 LTR MaLR 0 346 1 1 1005 1197 191 107 61 chr5 55142874 55143082 -97394177 - RMER13A LTR ERVK -649 211 1 1 1005 474 61 0 0 chr5 55143093 55143159 -97394100 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1005 302 61 0 20 chr5 55143399 55143449 -97393810 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1005 1205 34 7 0 chr5 55143453 55143599 -97393660 - B1_Mm SINE Alu 0 147 1 1 1005 735 132 0 8 chr5 55145246 55145376 -97391883 + BC1_Mm scRNA scRNA 1 129 -23 1 1005 207 0 0 0 chr5 55145384 55145407 -97391852 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1 1005 242 340 19 19 chr5 55146258 55146363 -97390896 - MLT1I-int LTR MaLR -1015 372 268 1 1005 1165 305 34 34 chr5 55146450 55146867 -97390392 - MER67D LTR ERV1 -78 436 20 1 1005 242 352 66 70 chr5 55147164 55147436 -97389823 - MLT1I LTR MaLR -40 371 101 1 1005 294 211 0 106 chr5 55148842 55148927 -97388332 - RLTR21 LTR ERVK 0 1572 1497 1 1005 2201 262 122 83 chr5 55148912 55149324 -97387935 - RMER12 LTR ERVK -54 1268 852 1 1005 252 0 0 0 chr5 55149324 55149352 -97387907 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1005 1079 66 0 0 chr5 55149353 55149489 -97387770 - B1_Mus1 SINE Alu -12 136 1 1 1005 2201 262 122 83 chr5 55149489 55150294 -97386965 - RMER12 LTR ERVK -471 851 4 1 1005 221 152 0 0 chr5 55150834 55150867 -97386392 - MIRb SINE MIR -14 254 222 1 1005 201 316 69 30 chr5 55150933 55151034 -97386225 - MIR SINE MIR -141 121 17 2 1005 662 179 8 0 chr5 55151351 55151485 -97385774 + CT-rich Low_complexity Low_complexity 1 135 0 2 1005 357 93 0 0 chr5 55151485 55151539 -97385720 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1005 973 234 60 0 chr5 55151961 55152162 -97385097 - B3 SINE B2 -3 213 1 2 1005 1379 294 72 51 chr5 55152167 55152715 -97384544 - Lx6 LINE L1 -28 7432 6527 2 1005 450 0 0 0 chr5 55152756 55152806 -97384453 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1005 505 264 53 20 chr5 55154405 55154570 -97382689 + MIR SINE MIR 99 266 -2 2 1005 26 50 0 0 chr5 55154738 55154778 -97382481 + AT_rich Low_complexity Low_complexity 1 40 0 2 1005 293 139 65 16 chr5 55154937 55155061 -97382198 + (TA)n Simple_repeat Simple_repeat 2 131 0 2 1005 212 200 18 0 chr5 55155092 55155147 -97382112 + (CATA)n Simple_repeat Simple_repeat 3 58 0 2 1005 363 132 29 14 chr5 55155482 55155551 -97381708 + HAL1-3A_ME LINE L1 1942 2011 -847 2 1005 246 128 0 0 chr5 55155551 55155590 -97381669 + (CACG)n Simple_repeat Simple_repeat 4 42 0 2 1005 216 0 0 0 chr5 55155714 55155738 -97381521 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1005 774 343 3 3 chr5 55156206 55156525 -97380734 - Lx8 LINE L1 -266 7207 6889 2 1005 234 91 0 0 chr5 55156525 55156558 -97380701 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1005 246 105 0 0 chr5 55156633 55156671 -97380588 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1005 408 111 0 0 chr5 55156671 55156733 -97380526 + (TG)n Simple_repeat Simple_repeat 2 64 0 2 1005 358 315 29 48 chr5 55157072 55157282 -97379977 - Lx8 LINE L1 -16 7457 7252 2 1005 378 0 0 0 chr5 55159468 55159510 -97377749 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 2 1005 220 146 24 0 chr5 55159510 55159551 -97377708 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1005 323 229 10 90 chr5 55160081 55160235 -97377024 + RLTR18 LTR ERVK 1 183 -329 2 1005 786 299 43 36 chr5 55160400 55160792 -97376467 + RLTR18 LTR ERVK 111 612 -4 2 1005 1001 300 51 34 chr5 55161983 55162335 -97374924 + ORR1E LTR MaLR 2 359 0 2 1005 237 135 0 0 chr5 55162779 55162831 -97374428 + (T)n Simple_repeat Simple_repeat 1 52 0 2 1005 369 0 0 0 chr5 55163120 55163161 -97374098 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1005 459 0 0 0 chr5 55163161 55163211 -97374048 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1005 1021 105 28 0 chr5 55163212 55163355 -97373904 - B1_Mus1 SINE Alu 0 148 2 2 1005 788 320 67 9 chr5 55163683 55163998 -97373261 + Tigger10 DNA Tigger 1433 1765 -78 2 1005 649 127 17 0 chr5 55164173 55164291 -97372968 + L1_Mus3 LINE L1 6517 6636 -2 2 1005 32374 19 13 15 chr5 55164520 55169202 -97368057 + L1Md_A LINE L1 214 4926 -957 2 1005 225 183 46 77 chr5 55169202 55169267 -97367992 - RMER20A LTR ERVK -268 248 186 2 1005 32374 19 13 15 chr5 55169267 55169921 -97367338 + L1Md_A LINE L1 4927 5586 -297 2 1005 8318 36 0 0 chr5 55169921 55170943 -97366316 + L1Md_T LINE L1 5587 6582 0 2 1005 196 263 24 84 chr5 55171397 55171480 -97365779 - L3b LINE CR1 -121 361 284 2 1005 614 319 9 37 chr5 55173408 55173626 -97363633 + B3 SINE B2 5 216 0 2 1005 235 217 32 32 chr5 55174114 55174176 -97363083 + MIRb SINE MIR 120 181 -87 2 1005 16605 184 30 35 chr5 55175714 55178414 -97358845 - Lx5 LINE L1 -137 6913 4275 2 1005 261 0 0 0 chr5 55178414 55178443 -97358816 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1005 16605 176 22 50 chr5 55178443 55179001 -97358258 - Lx5 LINE L1 -1603 4274 3723 2 1005 1571 5 5 11 chr5 55179001 55179191 -97358068 - L1Md_F2 LINE L1 -3 6579 6391 2 1005 16605 176 22 50 chr5 55179191 55179443 -97357816 - Lx5 LINE L1 -2155 3722 3478 2 1005 186 43 0 0 chr5 55179443 55179466 -97357793 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1005 16605 176 22 50 chr5 55179466 55180647 -97356612 - Lx5 LINE L1 -2400 3477 2300 2 1005 1926 164 30 30 chr5 55180655 55181088 -97356171 - Lx5 LINE L1 -4230 1647 1214 2 1005 799 154 33 77 chr5 55181088 55181271 -97355988 - B2_Mm2 SINE B2 -19 176 2 2 125 1926 198 152 1147 chr5 55181271 55181423 -97355836 - Lx5 LINE L1 -4664 1213 1041 2 1006 5209 112 5 13 chr5 55181423 55182194 -97355065 + Lx2A LINE L1 6244 7008 0 2 1006 1473 200 158 56 chr5 55182194 55182456 -97354803 - Lx5 LINE L1 -6046 1040 732 2 1006 297 109 0 0 chr5 55182831 55182886 -97354373 + (T)n Simple_repeat Simple_repeat 1 55 0 2 1006 1145 75 0 0 chr5 55182886 55183032 -97354227 - B1_Mus2 SINE Alu 0 147 2 2 1006 194 176 20 0 chr5 55184143 55184194 -97353065 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 2 1006 832 169 151 0 chr5 55184580 55184746 -97352513 + RLTR18B LTR ERVK 1 191 -321 2 1006 1275 220 151 92 chr5 55184756 55185286 -97351973 - RMER4B LTR ERVK -8 577 17 2 1006 1227 265 7 3 chr5 55185352 55185651 -97351608 + RLTR18B LTR ERVK 212 511 -1 2 1006 252 404 59 13 chr5 55185716 55185869 -97351390 + RSINE1 SINE B4 4 163 -2 2 1006 410 298 25 0 chr5 55188857 55188988 -97348271 + MIR3 SINE MIR 60 187 -21 2 1006 23 33 0 0 chr5 55190923 55190953 -97346306 + AT_rich Low_complexity Low_complexity 1 30 0 2 1006 2449 159 59 24 chr5 55191137 55191677 -97345582 - RLTR31_Mm LTR ERVK 0 561 3 2 1006 333 145 0 0 chr5 55192592 55192654 -97344605 + (TCC)n Simple_repeat Simple_repeat 3 64 0 2 1006 670 316 73 90 chr5 55192714 55193046 -97344213 - MLT2B3 LTR ERVL -6 550 253 2 1006 216 0 0 0 chr5 55193046 55193070 -97344189 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1006 343 365 50 87 chr5 55193070 55193179 -97344080 - MLT2B3 LTR ERVL -268 252 149 2 1006 234 0 0 0 chr5 55193181 55193207 -97344052 + (TGGG)n Simple_repeat Simple_repeat 4 29 0 2 1006 644 126 18 0 chr5 55193209 55193320 -97343939 + Lx2 LINE L1 6884 6996 -1 2 1006 1068 111 0 0 chr5 55193575 55193737 -97343522 + (TTCTC)n Simple_repeat Simple_repeat 1 162 0 2 1006 1000 37 12 36 chr5 55195263 55195431 -97341828 + (TCTA)n Simple_repeat Simple_repeat 1 164 0 2 1006 323 333 10 0 chr5 55195508 55195604 -97341655 - RSINE1 SINE B4 -66 99 3 2 1006 1303 206 6 183 chr5 55196997 55197544 -97339715 - Lx7 LINE L1 0 7696 7247 2 1006 333 0 0 0 chr5 55197547 55197584 -97339675 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1006 327 301 122 17 chr5 55197680 55197870 -97339389 + MIR SINE MIR 22 240 -28 2 1006 356 240 13 0 chr5 55198152 55198227 -97339032 + ID4 SINE ID 4 79 -4 2 1006 324 0 0 0 chr5 55198761 55198797 -97338462 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 2 1006 847 240 28 5 chr5 55198878 55199096 -97338163 - ID_B1 SINE B4 0 224 2 2 1006 449 329 80 38 chr5 55199211 55199473 -97337786 + MLT1D LTR MaLR 231 503 -2 2 1006 185 337 105 0 chr5 55199840 55199926 -97337333 - L2b LINE L2 -3 3372 3278 2 1006 26 30 0 0 chr5 55200519 55200552 -97336707 + AT_rich Low_complexity Low_complexity 1 33 0 2 1006 264 164 55 0 chr5 55201349 55201404 -97335855 + L1MA5 LINE L1 5865 5922 -378 2 1006 722 45 36 0 chr5 55201449 55201560 -97335699 + (TC)n Simple_repeat Simple_repeat 2 116 0 2 1006 207 69 0 0 chr5 55201560 55201588 -97335671 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1006 843 73 26 13 chr5 55201812 55201965 -97335294 + (TCTCTG)n Simple_repeat Simple_repeat 2 156 0 2 1006 1378 106 0 4 chr5 55202076 55202282 -97334977 - Lx LINE L1 -642 6012 5819 2 1006 7024 127 6 4 chr5 55202289 55203517 -97333742 - Lx LINE L1 -8 6646 5416 2 1006 308 314 0 11 chr5 55203744 55203831 -97333428 - L1M2a LINE L1 -7082 86 1 2 1006 1164 82 0 0 chr5 55203916 55204075 -97333184 - L1_Mus1 LINE L1 0 6567 6409 2 1006 376 292 153 39 chr5 55204409 55204886 -97332373 - L1MA9 LINE L1 -9 6303 5773 2 1006 250 196 63 32 chr5 55204877 55204888 -97332371 - Lx3A LINE L1 -4 6977 6969 2 1006 324 0 0 0 chr5 55204888 55204924 -97332335 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2 1006 250 196 63 32 chr5 55204924 55205007 -97332252 - Lx3A LINE L1 -13 6968 6880 2 1006 2703 99 0 0 chr5 55205150 55205523 -97331736 - L1_Mur1 LINE L1 -84 5802 5430 2 1006 304 219 32 24 chr5 55209527 55209653 -97327606 + (TA)n Simple_repeat Simple_repeat 2 128 0 2 1006 579 308 53 37 chr5 55209843 55210089 -97327170 - MLT2B4 LTR ERVL -304 252 3 2 1006 416 285 131 86 chr5 55210251 55210784 -97326475 + L1MB3 LINE L1 5432 5988 -195 2 1006 601 85 0 24 chr5 55210758 55210842 -97326417 + L1Md_T LINE L1 5505 5586 -297 2 1006 8431 33 0 0 chr5 55210842 55211838 -97325421 + L1Md_T LINE L1 5587 6582 0 2 1006 4645 74 24 3 chr5 55211834 55212467 -97324792 + L1Md_F2 LINE L1 5933 6578 -4 2 1006 389 279 12 98 chr5 55212683 55212835 -97324424 - PB1D9 SINE Alu -9 141 1 2 1006 282 280 13 26 chr5 55214802 55214879 -97322380 + RMER5 LTR ERV1 44 119 -415 2 1006 279 370 24 57 chr5 55214889 55215187 -97322072 - B4A SINE B4 -4 288 1 2 1006 233 217 0 0 chr5 55215501 55215561 -97321698 + T-rich Low_complexity Low_complexity 6 65 0 2 1006 348 239 18 5 chr5 55215843 55215942 -97321317 + MLT1H2 LTR MaLR 390 549 0 2 1006 307 317 24 43 chr5 55216503 55216714 -97320545 - L1M2 LINE L1 -794 5755 5549 2 1006 360 0 0 0 chr5 55216864 55216904 -97320355 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1006 544 326 110 45 chr5 55216908 55217435 -97319824 - L1M2 LINE L1 -2941 3608 3048 2 1006 403 288 56 56 chr5 55217569 55217874 -97319385 - Lx9 LINE L1 -42 7602 7298 2 1006 229 250 54 27 chr5 55217890 55218001 -97319258 - L1M2 LINE L1 -5073 1776 1663 2 1006 1309 248 93 12 chr5 55218908 55219251 -97318008 + RMER1B Other Other 45 415 -651 2 1006 2058 259 79 87 chr5 55219221 55220291 -97316968 + RMER1B Other Other 1 1056 -10 2 1006 258 351 37 37 chr5 55221559 55221695 -97315564 - L2c LINE L2 0 3387 3252 2 1006 22 0 0 0 chr5 55222119 55222141 -97315118 + AT_rich Low_complexity Low_complexity 1 22 0 2 1006 23 33 0 0 chr5 55222355 55222385 -97314874 + AT_rich Low_complexity Low_complexity 1 30 0 2 1006 23 0 0 0 chr5 55223175 55223198 -97314061 + AT_rich Low_complexity Low_complexity 1 23 0 2 1006 204 158 0 0 chr5 55223590 55223628 -97313631 + T-rich Low_complexity Low_complexity 2 39 0 2 1006 240 324 19 29 chr5 55224596 55224701 -97312558 - MER5A DNA MER1_type -21 168 65 2 1006 22 70 0 0 chr5 55224860 55224903 -97312356 + AT_rich Low_complexity Low_complexity 1 43 0 3 1006 333 190 39 39 chr5 55224916 55225020 -97312239 - Lx9 LINE L1 -8 7636 7533 3 1006 465 19 0 0 chr5 55225020 55225074 -97312185 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1006 655 189 83 7 chr5 55225082 55225226 -97312033 - Lx9 LINE L1 -179 7465 7311 3 1006 1755 248 58 16 chr5 55225227 55225654 -97311605 + Lx9 LINE L1 6403 6847 -797 3 1006 25 0 0 0 chr5 55225665 55225690 -97311569 + AT_rich Low_complexity Low_complexity 1 25 0 3 1006 536 42 14 0 chr5 55226161 55226232 -97311027 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 1006 508 341 74 45 chr5 55227015 55227325 -97309934 - ORR1E LTR MaLR -38 321 3 3 1006 890 104 6 0 chr5 55229352 55229515 -97307744 + (TG)n Simple_repeat Simple_repeat 2 165 0 3 1006 586 290 23 19 chr5 55231216 55231430 -97305829 + B3 SINE B2 2 216 0 3 1006 291 157 0 0 chr5 55231695 55231746 -97305513 + T-rich Low_complexity Low_complexity 1 51 0 3 1006 354 23 0 0 chr5 55231800 55231843 -97305416 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3 1006 212 0 0 35 chr5 55231884 55231913 -97305346 + (TAA)n Simple_repeat Simple_repeat 1 28 0 3 1006 22 0 0 0 chr5 55232482 55232504 -97304755 + AT_rich Low_complexity Low_complexity 1 22 0 3 1006 212 424 8 0 chr5 55232721 55232839 -97304420 - L2a LINE L2 -5 3421 3303 3 1006 7340 130 5 1 chr5 55233180 55234680 -97302579 + Lx LINE L1 5124 6630 -24 3 1006 357 161 0 0 chr5 55234683 55234739 -97302520 - B1_Mur4 SINE Alu -94 56 1 3 1006 182 37 0 36 chr5 55235094 55235122 -97302137 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1006 310 244 26 0 chr5 55235605 55235683 -97301576 - L1MEg LINE L1 -4122 1962 1883 3 1006 423 0 0 0 chr5 55235683 55235730 -97301529 + (TTC)n Simple_repeat Simple_repeat 3 49 0 3 1006 524 56 14 0 chr5 55235727 55235799 -97301460 + (TC)n Simple_repeat Simple_repeat 2 74 0 3 1006 1620 193 127 62 chr5 55235805 55236224 -97301035 - RLTR41 LTR ERV1 0 446 1 3 1006 2939 46 3 3 chr5 55236282 55236649 -97300610 - L1_Mus1 LINE L1 0 6567 6201 3 1006 370 335 53 3 chr5 55237669 55237811 -97299448 + B1F SINE Alu 3 149 0 3 1006 261 0 0 0 chr5 55238091 55238120 -97299139 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1006 1144 64 0 0 chr5 55238121 55238262 -97298997 - B1_Mus1 SINE Alu -7 141 1 3 1006 257 276 50 10 chr5 55238518 55238617 -97298642 + HERV16-int LTR ERVL 1023 1125 -3871 3 1006 618 330 16 16 chr5 55239322 55239516 -97297743 + MER45C DNA Tip100 41 234 -719 3 1006 233 177 78 31 chr5 55239732 55239796 -97297463 + MER45A DNA Tip100 100 166 -12 3 1006 1112 253 58 0 chr5 55240566 55240859 -97296400 - Lx3C LINE L1 -2 6974 6665 3 1006 360 0 0 0 chr5 55240874 55240914 -97296345 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 1006 850 100 0 0 chr5 55240914 55241034 -97296225 - B2_Mm1a SINE B2 -34 159 40 3 1006 5168 167 44 21 chr5 55241040 55242045 -97295214 - Lx3C LINE L1 -325 6651 5649 3 1006 1318 84 0 0 chr5 55242333 55242511 -97294748 - L1_Mus1 LINE L1 0 6567 6390 3 1006 343 48 0 0 chr5 55242511 55242553 -97294706 + L1_Mus1 LINE L1 6379 6420 -147 3 1006 4918 168 29 12 chr5 55242550 55243471 -97293788 - L1_Mur1 LINE L1 -223 5663 4727 3 1006 480 272 100 40 chr5 55243506 55243874 -97293385 - L1M3 LINE L1 -870 5430 5033 3 1006 212 97 15 46 chr5 55245768 55245833 -97291426 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 1006 839 300 52 43 chr5 55246432 55246801 -97290458 + ORR1D1 LTR MaLR 1 372 -2 3 1006 794 87 0 0 chr5 55247098 55247213 -97290046 + L1_Mus1 LINE L1 6451 6565 -2 3 1006 28 61 0 0 chr5 55247213 55247262 -97289997 + AT_rich Low_complexity Low_complexity 1 49 0 3 1006 203 0 0 36 chr5 55247291 55247319 -97289940 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1006 1051 83 0 0 chr5 55247339 55247472 -97289787 + B1_Mus2 SINE Alu 5 137 -10 3 1006 372 22 0 0 chr5 55247472 55247517 -97289742 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1006 271 337 55 0 chr5 55247534 55247733 -97289526 - L1M5 LINE L1 -609 5570 5361 3 1006 23 0 0 0 chr5 55247768 55247791 -97289468 + AT_rich Low_complexity Low_complexity 1 23 0 3 1006 235 310 58 21 chr5 55247791 55247982 -97289277 - L1MC LINE L1 -803 5343 5146 3 1006 21 82 0 0 chr5 55248015 55248064 -97289195 + AT_rich Low_complexity Low_complexity 1 49 0 3 1006 186 156 0 0 chr5 55248734 55248779 -97288480 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1006 225 351 0 0 chr5 55249277 55249334 -97287925 - L2a LINE L2 -27 3399 3343 3 1006 292 333 87 23 chr5 55249759 55249931 -97287328 - L2a LINE L2 -676 2743 2561 3 1006 603 142 0 0 chr5 55250312 55250418 -97286841 + (TG)n Simple_repeat Simple_repeat 1 106 0 3 1006 313 239 29 4 chr5 55250422 55250498 -97286761 - B1F SINE Alu -21 96 22 3 1006 254 366 20 46 chr5 55250518 55250670 -97286589 + Charlie1a DNA MER1_type 6 153 -1302 3 1006 261 314 148 49 chr5 55250847 55251181 -97286078 - MLT1E3 LTR MaLR -3 650 242 3 1006 939 18 0 0 chr5 55251331 55251440 -97285819 + (CA)n Simple_repeat Simple_repeat 2 110 0 3 1006 459 0 0 0 chr5 55251440 55251490 -97285769 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1006 2831 73 29 3 chr5 55251541 55251927 -97285332 - MTA_Mm LTR MaLR 0 396 1 3 1006 225 340 2 0 chr5 55252959 55253033 -97284226 - MIR SINE MIR -163 105 31 3 1006 27 81 0 0 chr5 55253445 55253507 -97283752 + AT_rich Low_complexity Low_complexity 1 62 0 3 1006 2135 82 0 30 chr5 55253711 55254012 -97283247 + L1Md_F2 LINE L1 6279 6570 -12 3 1006 345 253 0 0 chr5 55254586 55254661 -97282598 + ID4_ SINE ID 6 80 -3 3 1006 243 0 0 0 chr5 55254740 55254767 -97282492 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1006 423 0 0 0 chr5 55254767 55254813 -97282446 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1006 228 308 15 44 chr5 55256578 55256646 -97280613 - L2a LINE L2 0 3426 3361 3 1006 987 87 50 7 chr5 55256792 55256931 -97280328 + B1_Mus2 SINE Alu 2 146 -1 3 1006 1080 279 31 97 chr5 55257039 55257492 -97279767 + RLTR23 LTR ERV1 8 430 0 3 1006 229 318 115 56 chr5 55257534 55257804 -97279455 - L1MC3 LINE L1 -212 7573 7288 3 1006 11378 197 45 24 chr5 55258399 55261105 -97276154 + L1_Mur2 LINE L1 2805 5568 -309 3 1006 1600 304 120 40 chr5 55261100 55261779 -97275480 + Lx6 LINE L1 6161 7147 -313 3 1006 4171 120 13 0 chr5 55261779 55262405 -97274854 - Lx LINE L1 0 6654 6021 3 1006 1600 303 140 46 chr5 55262405 55262706 -97274553 + Lx6 LINE L1 7148 7439 -21 3 1006 2145 203 38 11 chr5 55262712 55263273 -97273986 + Lx4B LINE L1 6350 6943 -30 3 1006 216 0 0 0 chr5 55263288 55263312 -97273947 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 3 1006 2349 106 100 10 chr5 55263626 55264026 -97273233 + L1_Mus3 LINE L1 6198 6633 -5 3 1006 256 62 0 0 chr5 55264962 55264994 -97272265 - L1Md_T LINE L1 -139 6443 6412 3 1006 965 55 13 40 chr5 55264994 55265146 -97272113 + L1Md_F3 LINE L1 6437 6584 0 3 1006 332 306 153 20 chr5 55265662 55265682 -97271577 + MLT1E2 LTR MaLR 396 421 -206 3 1006 690 304 97 11 chr5 55265682 55266031 -97271228 - MTE2b LTR MaLR 0 379 1 3 1006 332 306 153 20 chr5 55266031 55266213 -97271046 + MLT1E2 LTR MaLR 422 625 -2 3 1006 5799 43 1 1 chr5 55267615 55268318 -97268941 - L1Md_F2 LINE L1 0 6582 5880 3 1006 16069 65 8 1 chr5 55268318 55270411 -97266848 + L1_Mm LINE L1 3573 5679 -204 3 1006 1680 244 19 91 chr5 55270448 55271111 -97266148 - Lx7 LINE L1 -1711 5985 5362 3 1006 1388 219 106 0 chr5 55271106 55271426 -97265833 + Lx6 LINE L1 6261 6614 -846 3 1006 185 0 40 0 chr5 55271831 55271856 -97265403 + (TTTTTA)n Simple_repeat Simple_repeat 6 31 0 3 1006 388 276 21 69 chr5 55272576 55272720 -97264539 + B1F SINE Alu 5 141 -8 3 1006 2911 213 23 16 chr5 55272736 55273467 -97263792 + Lx4B LINE L1 6184 6995 -63 3 1006 255 31 0 0 chr5 55273484 55273516 -97263743 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 3 1006 27 0 0 0 chr5 55274516 55274543 -97262716 + AT_rich Low_complexity Low_complexity 1 27 0 3 1006 312 107 0 0 chr5 55275098 55275154 -97262105 + L1Md_F2 LINE L1 6517 6572 -10 3 1006 4517 144 8 20 chr5 55277206 55277985 -97259274 + Lx3A LINE L1 6210 6978 -3 3 1006 203 260 0 0 chr5 55277986 55278036 -97259223 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 3 1006 203 389 53 7 chr5 55279667 55279817 -97257442 - L2 LINE L2 -974 2445 2289 3 1006 7418 93 17 1 chr5 55280942 55282122 -97255137 - L1_Mus3 LINE L1 -9 6629 5431 3 1006 2143 120 3 0 chr5 55282117 55282443 -97254816 + L1_Mus3 LINE L1 5083 5409 -474 3 1006 198 0 0 0 chr5 55282514 55282536 -97254723 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1006 26 30 0 0 chr5 55283058 55283091 -97254168 + AT_rich Low_complexity Low_complexity 1 33 0 3 1006 1288 82 0 0 chr5 55283095 55283277 -97253982 - L1_Mus2 LINE L1 -1 6565 6384 3 1006 1139 93 0 12 chr5 55283277 55283441 -97253818 + L1_Mus1 LINE L1 5795 5956 -610 3 1006 1658 74 0 0 chr5 55283591 55283808 -97253451 + L1_Mus1 LINE L1 6351 6567 0 3 1006 682 145 13 46 chr5 55283930 55284082 -97253177 - L1_Mus3 LINE L1 0 6638 6492 3 1006 7951 140 58 8 chr5 55286837 55288272 -97248987 - L1_Mur2 LINE L1 -1792 4085 2579 3 1006 1142 224 3 60 chr5 55288273 55288558 -97248701 - L1_Mur2 LINE L1 -6174 912 644 3 1006 312 48 0 0 chr5 55288570 55288612 -97248647 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 3 1006 477 273 24 129 chr5 55288618 55288959 -97248300 - Lx7 LINE L1 -6 7690 7386 3 1006 239 369 32 40 chr5 55289315 55289566 -97247693 - L1ME3A LINE L1 -64 6109 5861 3 1006 221 143 0 39 chr5 55289574 55289625 -97247634 + T-rich Low_complexity Low_complexity 5 53 0 3 1006 1061 100 0 0 chr5 55289632 55289772 -97247487 - B1_Mus1 SINE Alu -7 141 2 3 1006 197 180 0 20 chr5 55289857 55289908 -97247351 + (CATATA)n Simple_repeat Simple_repeat 5 54 0 3 1006 313 361 110 4 chr5 55290268 55290513 -97246746 - MLT1J-int LTR MaLR -1106 281 11 3 1006 819 289 44 33 chr5 55291160 55291597 -97245662 - Lx7 LINE L1 -1793 5903 5429 3 1006 470 266 0 18 chr5 55291617 55291728 -97245531 - PB1D9 SINE Alu -2 118 10 4 1006 3859 99 7 14 chr5 55291799 55292362 -97244897 - L1_Mus3 LINE L1 -18 6620 6062 4 1006 349 219 15 24 chr5 55292369 55292530 -97244729 - Lx7 LINE L1 -846 5454 5294 3 1006 359 297 70 12 chr5 55292682 55292852 -97244407 + L1_Mm LINE L1 4368 4548 -1338 4 1006 317 102 17 0 chr5 55293014 55293073 -97244186 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1006 1990 118 43 9 chr5 55293395 55293720 -97243539 - L1_Mus4 LINE L1 0 6636 6301 4 1006 1889 213 74 20 chr5 55294185 55294630 -97242629 - RMER6D LTR ERVK -1 719 251 4 1006 653 236 64 0 chr5 55294642 55294799 -97242460 - Lx6 LINE L1 -24 7436 7270 4 1006 2008 127 8 85 chr5 55296612 55296965 -97240294 - ORR1A3 LTR MaLR 0 326 1 4 1006 262 305 42 10 chr5 55297391 55297487 -97239772 + B4A SINE B4 83 181 -111 4 1006 1815 263 34 2 chr5 55297491 55297963 -97239296 - Lx7 LINE L1 -357 7339 6853 4 1006 2548 118 8 0 chr5 55297970 55298335 -97238924 - L1_Mm LINE L1 -61 5822 5455 4 1006 4362 95 14 32 chr5 55298335 55298985 -97238274 + L1_Mus3 LINE L1 5999 6636 -2 4 1006 2259 133 11 0 chr5 55298986 55299339 -97237920 + Lx3_Mus LINE L1 6653 7009 0 4 1006 4607 214 50 11 chr5 55299354 55300511 -97236748 - L1_Mur3 LINE L1 -59 5821 4620 4 1006 349 172 20 10 chr5 55300924 55301024 -97236235 + Lx2 LINE L1 6895 6995 -2 4 1006 1953 139 54 52 chr5 55301042 55301429 -97235830 + Lx3A LINE L1 6587 6974 -7 4 1006 21 0 0 0 chr5 55301748 55301769 -97235490 + AT_rich Low_complexity Low_complexity 1 21 0 4 1006 601 124 0 0 chr5 55301996 55302101 -97235158 + Lx2A1 LINE L1 6897 7001 -7 4 1006 312 257 161 94 chr5 55302280 55302495 -97234764 + MTEa LTR MaLR 121 366 -13 4 1006 3297 31 0 2 chr5 55302625 55303019 -97234240 - L1Md_F3 LINE L1 -1 6583 6191 4 1006 225 253 67 0 chr5 55303167 55303242 -97234017 - L1MC3 LINE L1 -523 7262 7183 4 1006 303 321 77 26 chr5 55303309 55303504 -97233755 - L1MC3 LINE L1 -698 7087 6883 4 1006 423 245 48 12 chr5 55303686 55303851 -97233408 - L1MC3 LINE L1 -1171 6614 6444 4 1006 325 335 41 57 chr5 55303872 55304178 -97233081 + MTEa LTR MaLR 64 379 0 4 1006 716 271 54 59 chr5 55304405 55304884 -97232375 + BGLII_B LTR ERVK 5 424 -17 4 1006 334 162 21 42 chr5 55304976 55305118 -97232141 + (TCTCTG)n Simple_repeat Simple_repeat 2 140 0 4 1006 201 139 0 0 chr5 55305877 55305920 -97231339 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1006 351 221 138 93 chr5 55305950 55306175 -97231084 + Lx9 LINE L1 7384 7618 -26 4 1006 182 37 37 0 chr5 55307340 55307367 -97229892 + (TA)n Simple_repeat Simple_repeat 1 28 0 4 1006 29 28 0 0 chr5 55307492 55307528 -97229731 + AT_rich Low_complexity Low_complexity 1 36 0 4 1006 22 56 0 0 chr5 55307638 55307674 -97229585 + AT_rich Low_complexity Low_complexity 1 36 0 4 1006 438 20 0 0 chr5 55307694 55307745 -97229514 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1006 1230 293 14 38 chr5 55309149 55309515 -97227744 - ORR1D2 LTR MaLR -10 360 4 4 1006 189 200 40 0 chr5 55309989 55310039 -97227220 - L3 LINE CR1 -1839 2650 2599 4 1006 355 344 66 37 chr5 55310104 55310240 -97227019 + RSINE1 SINE B4 5 144 -21 4 1006 537 354 125 53 chr5 55310344 55311170 -97226089 + L2 LINE L2 1877 2761 -658 4 1006 23 55 0 18 chr5 55311768 55311798 -97225461 + AT_rich Low_complexity Low_complexity 1 30 0 4 1006 1197 55 0 0 chr5 55311798 55311944 -97225315 + B1_Mus1 SINE Alu 3 148 0 4 1006 23 55 0 18 chr5 55311944 55311968 -97225291 + AT_rich Low_complexity Low_complexity 1 24 0 4 1007 2114 266 31 6 chr5 55312485 55313004 -97224255 - Lx6 LINE L1 -17 7443 6912 4 1007 258 373 44 7 chr5 55313277 55313412 -97223847 - L2 LINE L2 -2135 1284 1145 4 1007 501 115 0 0 chr5 55313630 55313708 -97223551 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 1007 1124 73 0 0 chr5 55315688 55315838 -97221421 - L1_Mus1 LINE L1 -3 6564 6415 4 1007 281 308 77 92 chr5 55316398 55316694 -97220565 + MLT1B LTR MaLR 1 310 -157 4 1007 723 251 57 57 chr5 55316746 55317046 -97220213 + L1_Mur3 LINE L1 5260 5559 -321 4 1007 356 197 416 0 chr5 55317173 55317351 -97219908 + Lx9 LINE L1 7384 7635 -9 4 1007 366 364 23 0 chr5 55317492 55317624 -97219635 + RSINE1 SINE B4 2 136 -29 4 1007 3666 182 22 63 chr5 55317832 55318643 -97218616 + Lx3C LINE L1 6197 6974 -2 4 1007 874 318 26 6 chr5 55318887 55319232 -97218027 + L1MC4a LINE L1 7368 7719 -163 4 1007 456 19 0 0 chr5 55319979 55320032 -97217227 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1007 441 0 0 0 chr5 55320032 55320080 -97217179 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1007 446 126 41 21 chr5 55320111 55320208 -97217051 - L1Md_F2 LINE L1 -4 6578 6480 4 1007 267 300 59 111 chr5 55320690 55320825 -97216434 - B4A SINE B4 -1 291 164 4 1007 252 0 0 0 chr5 55320920 55320948 -97216311 + (TTA)n Simple_repeat Simple_repeat 2 29 0 4 1007 21 36 0 0 chr5 55321130 55321158 -97216101 + AT_rich Low_complexity Low_complexity 1 28 0 4 1007 474 18 0 0 chr5 55322114 55322169 -97215090 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1007 5678 65 46 0 chr5 55322188 55322932 -97214327 - L1Md_F2 LINE L1 -96 5787 5010 4 1007 5212 93 5 17 chr5 55322932 55323678 -97213581 + L1Md_F2 LINE L1 5845 6581 -1 4 1007 22 0 0 0 chr5 55324553 55324575 -97212684 + AT_rich Low_complexity Low_complexity 1 22 0 4 1007 2287 101 43 11 chr5 55324672 55325041 -97212218 - L1_Mus3 LINE L1 0 6638 6258 4 1007 21 36 0 0 chr5 55325410 55325438 -97211821 + AT_rich Low_complexity Low_complexity 1 28 0 4 1007 29 84 0 0 chr5 55325629 55325700 -97211559 + AT_rich Low_complexity Low_complexity 1 71 0 4 1007 4365 120 40 1 chr5 55326112 55326782 -97210477 - L1_Mus4 LINE L1 -6 6630 5935 4 1007 310 54 0 0 chr5 55326782 55326819 -97210440 + L1_Mus4 LINE L1 5884 5920 -718 4 1007 525 16 0 0 chr5 55327251 55327313 -97209946 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1007 2157 46 0 4 chr5 55327313 55327577 -97209682 - L1Md_F3 LINE L1 -21 6563 6301 4 1007 3602 31 0 0 chr5 55327576 55327997 -97209262 + L1Md_F3 LINE L1 5880 6300 -284 4 1007 36 23 0 0 chr5 55328657 55328700 -97208559 + AT_rich Low_complexity Low_complexity 1 43 0 4 1007 23 0 0 0 chr5 55329084 55329107 -97208152 + AT_rich Low_complexity Low_complexity 1 23 0 4 1007 2212 139 94 8 chr5 55329251 55329622 -97207637 - RLTR44A LTR ERVK 0 405 3 4 1007 5645 43 1 0 chr5 55329624 55330294 -97206965 - RLTR44-int LTR ERVK 0 2812 2142 4 1007 2704 323 47 51 chr5 55330469 55334139 -97203120 - IAP-d-int LTR ERVK -2051 5530 1520 4 1007 382 125 0 0 chr5 55334198 55334254 -97203005 - RLTR44-int LTR ERVK -2756 56 1 4 1007 2494 112 54 5 chr5 55334254 55334640 -97202619 - RLTR44A LTR ERVK 0 405 1 4 1007 520 275 73 36 chr5 55334884 55335130 -97202129 - Lx9 LINE L1 -511 7133 6805 4 1007 512 243 6 51 chr5 55335130 55335286 -97201973 + B1_Mur4 SINE Alu 2 150 0 4 1007 16634 111 25 8 chr5 55335413 55339029 -97198230 - Lx3A LINE L1 -2 6979 3312 4 1007 2333 157 23 52 chr5 55339029 55339506 -97197753 - Lx3B LINE L1 -9 6964 6502 4 1007 342 203 43 0 chr5 55339506 55339575 -97197684 - Lx3A LINE L1 -6156 828 757 4 1007 21 36 0 0 chr5 55340015 55340043 -97197216 + AT_rich Low_complexity Low_complexity 1 28 0 4 1007 27 49 0 0 chr5 55341412 55341453 -97195806 + AT_rich Low_complexity Low_complexity 1 41 0 4 1007 2333 40 40 2 chr5 55341921 55342231 -97195028 + IAPLTR2b LTR ERVK 1 310 -17 4 1007 226 341 8 53 chr5 55342874 55343007 -97194252 + B1F SINE Alu 21 147 -2 4 1007 28 29 0 0 chr5 55343266 55343301 -97193958 + AT_rich Low_complexity Low_complexity 1 35 0 4 1007 261 365 61 14 chr5 55343713 55343860 -97193399 + MTEa LTR MaLR 211 364 -15 4 1007 878 339 10 0 chr5 55344067 55344359 -97192900 - Lx9 LINE L1 -994 6650 6356 4 1007 1130 295 42 59 chr5 55345194 55345634 -97191625 + Lx7 LINE L1 6901 7328 -368 4 1007 282 73 0 0 chr5 55345634 55345675 -97191584 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1007 1130 295 42 59 chr5 55345675 55345706 -97191553 + Lx7 LINE L1 7329 7363 -333 4 1007 762 11 0 0 chr5 55346227 55346314 -97190945 + (GGA)n Simple_repeat Simple_repeat 2 88 0 4 1007 358 331 0 38 chr5 55346700 55346857 -97190402 + L1MC3 LINE L1 6713 6863 -922 4 1007 369 265 56 107 chr5 55347478 55347705 -97189554 + L1MB7 LINE L1 5658 5874 -310 4 1007 320 315 85 46 chr5 55348468 55348621 -97188638 + MTEa LTR MaLR 212 379 0 4 1007 480 310 54 36 chr5 55349223 55349558 -97187701 - L1MB8 LINE L1 -313 5865 5525 4 1007 29 0 0 0 chr5 55349717 55349746 -97187513 + AT_rich Low_complexity Low_complexity 1 29 0 4 1007 1301 201 45 28 chr5 55350552 55350905 -97186354 - RLTR10D LTR ERVK 0 359 1 4 1007 246 309 70 30 chr5 55351113 55351213 -97186046 + RSINE1 SINE B4 25 128 -37 4 1007 279 0 0 0 chr5 55351226 55351257 -97186002 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1007 570 41 0 0 chr5 55351257 55351329 -97185930 + (GA)n Simple_repeat Simple_repeat 2 74 0 4 1007 22 80 0 0 chr5 55351428 55351478 -97185781 + AT_rich Low_complexity Low_complexity 1 50 0 4 1007 29 0 0 0 chr5 55352227 55352256 -97185003 + AT_rich Low_complexity Low_complexity 1 29 0 4 1007 5777 18 0 0 chr5 55353665 55354324 -97182935 + L1Md_A LINE L1 5923 6581 -1 4 1007 217 114 87 43 chr5 55354330 55354422 -97182837 + (TA)n Simple_repeat Simple_repeat 1 96 0 4 1007 7898 76 45 42 chr5 55356030 55357070 -97180189 - MusHAL1 LINE L1 -960 1752 708 4 1007 1096 109 0 0 chr5 55357070 55357217 -97180042 - B1_Mus2 SINE Alu 0 147 1 4 1007 7898 76 45 42 chr5 55357217 55357428 -97179831 - MusHAL1 LINE L1 -2005 707 497 4 1007 554 0 15 0 chr5 55357600 55357666 -97179593 + (TAAAA)n Simple_repeat Simple_repeat 2 68 0 4 1007 354 349 31 44 chr5 55357677 55357905 -97179354 + MLT1B LTR MaLR 133 357 -33 4 1007 249 405 67 38 chr5 55358326 55358639 -97178620 + L2c LINE L2 3027 3348 -39 4 1007 884 310 23 60 chr5 55358798 55359148 -97178111 + RLTR18 LTR ERVK 3 339 -277 4 1007 749 237 35 44 chr5 55359143 55359346 -97177913 + RLTR18B LTR ERVK 187 387 -125 4 1007 3426 20 5 0 chr5 55359522 55359916 -97177343 - MTA_Mm LTR MaLR 0 396 1 5 1007 324 0 0 0 chr5 55361399 55361435 -97175824 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1007 743 0 0 11 chr5 55361441 55361529 -97175730 + (GGAGA)n Simple_repeat Simple_repeat 2 88 0 5 1007 656 154 199 8 chr5 55362671 55362802 -97174457 - RLTR11B LTR ERVK 0 453 298 5 1007 708 155 78 0 chr5 55362804 55362933 -97174326 + RLTR11A LTR ERVK 390 528 0 5 1007 7725 35 0 0 chr5 55363348 55364260 -97172999 - L1Md_T LINE L1 0 6582 5671 5 1007 8014 89 6 25 chr5 55364548 55366009 -97171250 - L1Md_Gf LINE L1 -4451 1435 2 5 1007 635 190 130 79 chr5 55366375 55366438 -97170821 + Lx7 LINE L1 7306 7362 -334 5 1007 216 67 0 0 chr5 55366438 55366468 -97170791 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 5 1007 635 190 130 79 chr5 55366468 55366541 -97170718 + Lx7 LINE L1 7363 7436 -260 5 1007 1043 49 7 0 chr5 55366541 55366683 -97170576 + (TG)n Simple_repeat Simple_repeat 2 144 0 5 1007 635 190 130 79 chr5 55366683 55366837 -97170422 + Lx7 LINE L1 7437 7611 -85 5 1007 411 284 31 49 chr5 55368216 55368379 -97168880 - RSINE1 SINE B4 0 165 6 5 1007 6393 73 36 3 chr5 55369725 55370593 -97166666 + L1_Mus2 LINE L1 5671 6566 0 5 1007 354 45 0 0 chr5 55370708 55370752 -97166507 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1007 335 319 42 60 chr5 55371261 55371428 -97165831 - RSINE1 SINE B4 0 165 2 5 1007 1979 148 8 34 chr5 55371868 55372225 -97165034 - Lx2 LINE L1 0 6997 6650 5 1007 2499 156 5 2 chr5 55372226 55372632 -97164627 + Lx2 LINE L1 6215 6621 -376 5 1007 37854 42 1 3 chr5 55372707 55378930 -97158329 - L1Md_T LINE L1 -2 6583 280 5 1007 601 167 0 0 chr5 55378952 55379054 -97158205 - ORR1B2 LTR MaLR 0 378 277 5 1007 858 109 0 0 chr5 55379055 55379183 -97158076 + (TTCCC)n Simple_repeat Simple_repeat 4 131 0 5 1007 7005 180 59 14 chr5 55379205 55380640 -97156619 - Lx4A LINE L1 -3 7055 5589 5 1007 501 132 0 24 chr5 55380614 55380699 -97156560 - L1_Mur2 LINE L1 -662 5215 5133 5 1007 18361 157 37 50 chr5 55381240 55384259 -97153000 - L1_Mur2 LINE L1 -739 5138 2049 5 1007 360 0 0 0 chr5 55384259 55384299 -97152960 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1007 540 0 0 0 chr5 55384299 55384358 -97152901 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1007 18361 157 37 50 chr5 55384358 55384575 -97152684 - L1_Mur2 LINE L1 -3829 2048 1833 5 1007 183 42 0 0 chr5 55384575 55384599 -97152660 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1007 18361 172 73 34 chr5 55384599 55386044 -97151215 - L1_Mur2 LINE L1 -4045 1832 422 5 1007 1057 226 14 0 chr5 55386057 55386274 -97150985 - ORR1B2 LTR MaLR -96 271 52 5 1007 282 370 66 7 chr5 55386405 55386541 -97150718 + ORR1E LTR MaLR 3 146 -213 5 1007 24 0 0 0 chr5 55387264 55387288 -97149971 + AT_rich Low_complexity Low_complexity 1 24 0 5 1007 330 228 57 38 chr5 55387453 55387558 -97149701 - MLT1A1 LTR MaLR -3 405 299 5 1007 963 89 0 0 chr5 55387679 55387814 -97149445 + (TTC)n Simple_repeat Simple_repeat 1 135 0 5 1007 23 0 0 0 chr5 55387814 55387837 -97149422 + AT_rich Low_complexity Low_complexity 1 23 0 5 1007 889 165 17 4 chr5 55388711 55388948 -97148311 + GA-rich Low_complexity Low_complexity 1 239 0 5 1007 274 344 48 85 chr5 55389487 55389652 -97147607 - MLT1J2 LTR MaLR -31 417 259 5 1007 2243 108 15 0 chr5 55389750 55390075 -97147184 + L1_Mus4 LINE L1 6302 6631 -5 5 1007 1538 162 4 15 chr5 55390605 55390874 -97146385 + L1VL1 LINE L1 1 266 -6156 5 1007 2087 141 78 0 chr5 55390874 55391235 -97146024 + L1Md_F2 LINE L1 480 868 -5748 5 1007 20255 90 2 13 chr5 55391230 55394734 -97142525 + L1Md_F2 LINE L1 3050 6510 -72 5 1007 423 38 0 0 chr5 55397009 55397062 -97140197 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1007 201 192 19 0 chr5 55397302 55397354 -97139905 + T-rich Low_complexity Low_complexity 1 53 0 5 1007 2271 75 19 22 chr5 55397535 55397850 -97139409 + L1_Mus1 LINE L1 6253 6566 -1 5 1007 229 349 54 31 chr5 55398100 55398230 -97139029 + MIRc SINE MIR 24 156 -112 5 1007 812 293 11 57 chr5 55398516 55398780 -97138479 + MTE2b LTR MaLR 126 377 -2 5 1007 533 15 15 0 chr5 55399376 55399442 -97137817 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 1007 419 141 13 0 chr5 55399884 55399962 -97137297 + CT-rich Low_complexity Low_complexity 1 79 0 5 1007 288 0 0 0 chr5 55399998 55400030 -97137229 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1007 252 0 0 0 chr5 55400337 55400365 -97136894 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1007 1708 238 35 50 chr5 55400563 55401081 -97136178 - RLTR18B LTR ERVK -2 510 1 5 1007 2854 13 2 191 chr5 55401301 55401782 -97135477 - RLTR10 LTR ERVK 0 390 1 5 1007 8849 13 2 0 chr5 55401784 55402777 -97134482 - RLTR10-int LTR ERVK -3 1984 990 5 1007 319 270 54 31 chr5 55402859 55402989 -97134270 - RLTR10-int LTR ERVK -5987 1594 1462 5 1007 4036 49 20 8 chr5 55403053 55403984 -97133275 - RLTR10-int LTR ERVK -989 998 6 5 1007 2917 16 2 159 chr5 55403984 55404444 -97132815 - RLTR10 LTR ERVK -2 388 1 5 1007 396 0 0 0 chr5 55405250 55405294 -97131965 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1007 22 70 0 0 chr5 55405572 55405615 -97131644 + AT_rich Low_complexity Low_complexity 1 43 0 5 1007 22 0 0 0 chr5 55405856 55405878 -97131381 + AT_rich Low_complexity Low_complexity 1 22 0 5 1007 253 214 25 79 chr5 55407212 55407415 -97129844 + RMER17C LTR ERVK 84 275 -135 5 1007 207 69 0 0 chr5 55407416 55407445 -97129814 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1007 367 302 77 55 chr5 55407660 55407842 -97129417 + MLT2B4 LTR ERVL 16 201 -355 5 1007 1025 164 5 17 chr5 55408198 55408452 -97128807 + CT-rich Low_complexity Low_complexity 1 250 0 5 1007 249 208 15 46 chr5 55408452 55408491 -97128768 + polypyrimidine Low_complexity Low_complexity 19 56 0 5 1007 960 111 0 0 chr5 55408491 55408671 -97128588 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 5 1007 249 208 15 46 chr5 55408671 55408687 -97128572 + polypyrimidine Low_complexity Low_complexity 3 18 0 5 1007 237 388 45 45 chr5 55408692 55408846 -97128413 - MLT1D LTR MaLR -93 412 259 5 1007 399 106 0 0 chr5 55409246 55409312 -97127947 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1007 5222 135 71 5 chr5 55410620 55411518 -97125741 - Lx3A LINE L1 -7 6974 6017 5 1007 26 0 0 0 chr5 55413456 55413482 -97123777 + AT_rich Low_complexity Low_complexity 1 26 0 5 1007 2971 130 15 15 chr5 55413483 55413953 -97123306 - Lx3A LINE L1 -8 6973 6504 5 1007 783 126 0 98 chr5 55414167 55414361 -97122898 - Lx LINE L1 0 6654 6480 5 1007 397 117 17 0 chr5 55414364 55414424 -97122835 - Lx3A LINE L1 -488 6493 6433 5 1007 1376 41 0 6 chr5 55415016 55415189 -97122070 + L1Md_F2 LINE L1 6390 6561 -21 5 1007 423 0 0 0 chr5 55415189 55415236 -97122023 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1007 301 333 79 53 chr5 55415238 55415466 -97121793 + MTC LTR MaLR 135 368 -53 5 1007 545 297 11 26 chr5 55416095 55416285 -97120974 + Lx7 LINE L1 7114 7300 -396 5 1007 237 163 0 0 chr5 55416389 55416438 -97120821 + T-rich Low_complexity Low_complexity 1 49 0 5 1007 657 47 0 0 chr5 55416570 55416655 -97120604 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 1007 261 0 0 0 chr5 55417269 55417298 -97119961 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1007 402 74 0 0 chr5 55417298 55417351 -97119908 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1007 723 230 0 22 chr5 55417360 55417498 -97119761 - B1_Mur4 SINE Alu -7 143 9 5 1007 303 93 0 0 chr5 55417591 55417634 -97119625 + (TTA)n Simple_repeat Simple_repeat 3 45 0 5 1007 584 180 21 14 chr5 55417635 55417844 -97119415 - ORR1A3 LTR MaLR -4 322 6 5 1007 225 154 0 0 chr5 55417845 55417884 -97119375 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1007 2796 287 62 32 chr5 55417885 55418928 -97118331 - Lx9 LINE L1 -127 7517 6443 5 1007 221 22 87 0 chr5 55418928 55418974 -97118285 + (CAA)n Simple_repeat Simple_repeat 2 51 0 5 1007 32 36 0 18 chr5 55418985 55418999 -97118260 + AT_rich Low_complexity Low_complexity 1 14 0 5 1007 1160 68 0 0 chr5 55418999 55419146 -97118113 - B1_Mm SINE Alu 0 147 1 5 1007 32 36 0 18 chr5 55419146 55419188 -97118071 + AT_rich Low_complexity Low_complexity 1 42 0 5 1007 42 0 0 0 chr5 55419928 55419970 -97117289 + AT_rich Low_complexity Low_complexity 1 42 0 5 1007 9329 24 0 0 chr5 55419970 55421735 -97115524 - L1Md_T LINE L1 0 6582 4818 5 1007 7821 22 0 0 chr5 55421731 55422652 -97114607 + L1Md_T LINE L1 3895 4815 -1068 5 1007 572 166 13 32 chr5 55422651 55422807 -97114452 - Lx7 LINE L1 -148 7548 7396 5 1007 1802 202 171 58 chr5 55422831 55423042 -97114217 - Lx6 LINE L1 -486 6974 6751 5 1007 789 58 0 0 chr5 55423042 55423145 -97114114 + (TC)n Simple_repeat Simple_repeat 1 103 0 5 1007 1802 202 171 58 chr5 55423145 55423448 -97113811 - Lx6 LINE L1 -710 6750 6402 5 1007 3614 71 9 36 chr5 55424384 55424908 -97112351 + L1Md_F2 LINE L1 6061 6570 -12 5 1007 21 71 0 0 chr5 55424917 55424959 -97112300 + AT_rich Low_complexity Low_complexity 1 42 0 5 1007 287 151 0 54 chr5 55425104 55425160 -97112099 + B1_Mm SINE Alu 95 147 0 5 1007 207 162 0 0 chr5 55425166 55425203 -97112056 + (TATG)n Simple_repeat Simple_repeat 2 38 0 5 1007 21 0 0 0 chr5 55425292 55425313 -97111946 + AT_rich Low_complexity Low_complexity 1 21 0 5 1007 188 237 0 0 chr5 55426743 55426781 -97110478 - L3 LINE CR1 -209 4280 4243 5 1007 611 262 131 15 chr5 55428012 55428210 -97109049 + B4A SINE B4 1 221 -71 5 1007 510 303 182 4 chr5 55428225 55428477 -97108782 + Lx6 LINE L1 6127 6423 -1037 5 1007 1228 277 3 6 chr5 55428804 55429117 -97108142 + Lx6 LINE L1 6416 6727 -733 5 1007 389 70 18 0 chr5 55429142 55429199 -97108060 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 5 1007 195 129 0 0 chr5 55429201 55429232 -97108027 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 5 1007 2230 283 47 17 chr5 55429232 55429930 -97107329 + Lx6 LINE L1 6742 7460 0 5 1007 363 73 0 0 chr5 55429955 55430010 -97107249 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1007 231 61 0 0 chr5 55430093 55430126 -97107133 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1007 360 97 0 0 chr5 55431057 55431119 -97106140 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1007 378 0 0 0 chr5 55431120 55431162 -97106097 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1007 333 0 0 0 chr5 55431401 55431438 -97105821 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1007 454 31 0 30 chr5 55433353 55433419 -97103840 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1007 5681 187 6 7 chr5 55433999 55434177 -97103082 + L1_Mur2 LINE L1 4550 4727 -1150 5 1007 207 0 0 0 chr5 55434177 55434200 -97103059 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1007 5681 187 6 7 chr5 55434200 55435103 -97102156 + L1_Mur2 LINE L1 4728 5628 -249 5 1007 4731 126 49 1 chr5 55435103 55435860 -97101399 + Lx3B LINE L1 6178 6970 -3 6 1007 5329 216 4 71 chr5 55435860 55435874 -97101385 + Lx2B LINE L1 5635 5638 -245 6 1007 180 0 0 0 chr5 55435874 55435894 -97101365 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 6 1007 5329 216 4 71 chr5 55435894 55436123 -97101136 + Lx2B LINE L1 5639 5792 -91 6 1007 241 0 0 0 chr5 55436186 55436222 -97101037 - L1_Mus2 LINE L1 0 6566 6531 6 1007 4449 136 36 38 chr5 55436230 55436577 -97100682 + Lx2B LINE L1 5804 6168 -832 6 1007 387 0 0 0 chr5 55436577 55436620 -97100639 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1007 4449 136 36 38 chr5 55436620 55437055 -97100204 + Lx2B LINE L1 6169 6583 -417 6 1007 4819 95 34 45 chr5 55437056 55437850 -97099409 + RLTR13C2 LTR ERVK 1 785 -23 6 1007 2140 122 18 0 chr5 55437870 55438198 -97099061 + Lx2B LINE L1 6579 6912 -88 6 1007 219 69 0 0 chr5 55438781 55438810 -97098449 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1007 949 289 32 103 chr5 55440877 55441383 -97095876 - Lx8 LINE L1 -118 7355 6886 6 1007 901 157 6 6 chr5 55441509 55441682 -97095577 + T-rich Low_complexity Low_complexity 2 174 0 6 1007 1159 69 0 0 chr5 55441684 55441829 -97095430 - B1_Mus2 SINE Alu -1 146 2 6 1007 323 336 62 42 chr5 55441856 55442164 -97095095 + Charlie1b DNA MER1_type 73 386 -137 6 1007 417 224 70 118 chr5 55443043 55443230 -97094029 - Lx5 LINE L1 0 7050 6873 6 125 583 54 65 0 chr5 55443442 55443534 -97093725 + (TCTCCC)n Simple_repeat Simple_repeat 2 99 0 6 1008 371 187 25 31 chr5 55443536 55443696 -97093563 + RMER17B LTR ERVK 301 459 -499 6 1008 216 130 0 0 chr5 55443698 55443744 -97093515 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 6 1008 22 56 0 0 chr5 55444121 55444157 -97093102 + AT_rich Low_complexity Low_complexity 1 36 0 6 1008 589 318 206 3 chr5 55444278 55444594 -97092665 - MTD LTR MaLR -20 399 20 6 1008 1104 285 123 64 chr5 55444616 55445193 -97092066 - MTD-int LTR MaLR 0 1258 648 6 1008 384 355 0 7 chr5 55445558 55445711 -97091548 + L1_Mur3 LINE L1 132 283 -7445 6 1008 2821 213 61 74 chr5 55445784 55446127 -97091132 + L1_Mur3 LINE L1 1775 2066 -3814 6 1008 396 40 0 0 chr5 55446127 55446177 -97091082 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1008 2821 207 32 78 chr5 55446177 55446701 -97090558 + L1_Mur3 LINE L1 2067 2594 -3286 6 1008 5666 85 13 6 chr5 55446701 55447481 -97089778 + L1Md_F2 LINE L1 5798 6582 0 6 1008 2821 235 215 55 chr5 55447481 55448073 -97089186 + L1_Mur3 LINE L1 2585 3462 -2415 6 1008 758 134 0 8 chr5 55448087 55448215 -97089044 + L1_Mur3 LINE L1 4324 4450 -1430 6 1008 443 233 158 0 chr5 55448235 55448368 -97088891 - Lx9 LINE L1 -170 7474 7321 6 1008 261 348 32 13 chr5 55448455 55448612 -97088647 + L1M2 LINE L1 5580 5739 -552 6 1008 390 235 43 22 chr5 55449036 55449175 -97088084 - Lx9 LINE L1 0 7644 7503 6 1008 24 0 0 0 chr5 55449695 55449719 -97087540 + AT_rich Low_complexity Low_complexity 1 24 0 6 1008 1162 183 76 8 chr5 55450575 55450812 -97086447 - RLTR22_Mur LTR ERVK 0 1848 1596 6 1008 3346 168 93 42 chr5 55451032 55451795 -97085464 - RLTR22_Mur LTR ERVK -1044 804 3 6 1008 28 61 0 0 chr5 55452702 55452751 -97084508 + AT_rich Low_complexity Low_complexity 1 49 0 6 1008 760 256 0 45 chr5 55453760 55453936 -97083323 + B3A SINE B2 1 168 -30 6 1008 456 19 0 0 chr5 55453942 55453995 -97083264 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1008 414 291 54 142 chr5 55455012 55455364 -97081895 - RMER20B LTR ERVK -55 572 252 6 1008 219 33 63 48 chr5 55455661 55455724 -97081535 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 6 1008 7551 91 6 8 chr5 55457216 55458180 -97079079 - L1_Mus3 LINE L1 0 6638 5677 6 1008 3016 71 126 0 chr5 55458180 55458602 -97078657 - MT2C_Mm LTR ERVL 0 475 1 6 1008 7551 93 15 9 chr5 55458602 55459019 -97078240 - L1_Mus3 LINE L1 -207 5676 5250 6 1008 1669 158 29 91 chr5 55459020 55459439 -97077820 - RLTR9C LTR ERVK 0 393 1 6 1008 901 189 24 0 chr5 55459717 55459881 -97077378 - ETnERV2-int LTR ERVK -969 6437 6270 6 1008 811 146 49 0 chr5 55459884 55460007 -97077252 - ETnERV2-int LTR ERVK -3312 4094 3966 6 1008 353 179 12 71 chr5 55460043 55460127 -97077132 - ETnERV-int LTR ERVK -3234 80 2 6 1008 845 114 0 0 chr5 55460222 55460336 -97076923 - Lx2 LINE L1 -491 6506 6393 6 1008 14979 181 12 15 chr5 55460347 55462094 -97075165 + Lx2B LINE L1 2891 4630 -1247 6 1008 285 51 0 0 chr5 55462094 55462133 -97075126 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1008 14979 207 28 12 chr5 55462133 55464404 -97072855 + Lx2B LINE L1 4631 6861 -139 6 1008 23 0 0 0 chr5 55464406 55464429 -97072830 + AT_rich Low_complexity Low_complexity 1 23 0 6 1008 2385 205 10 108 chr5 55464565 55465178 -97072081 + Lx4B LINE L1 6502 7054 -4 6 1008 364 350 77 30 chr5 55465298 55465466 -97071793 + B4 SINE B4 104 279 -13 6 1008 335 359 16 4 chr5 55465926 55466183 -97071076 - L1_Rod LINE L1 -3911 1936 1677 6 1008 784 95 0 65 chr5 55466190 55466314 -97070945 - L1Md_T LINE L1 -424 6158 6043 6 1008 2774 64 3 16 chr5 55466314 55466696 -97070563 + L1Md_F2 LINE L1 6206 6582 0 6 1008 25 31 0 0 chr5 55467051 55467083 -97070176 + AT_rich Low_complexity Low_complexity 1 32 0 6 1008 237 377 12 12 chr5 55467208 55467372 -97069887 - HAL1 LINE L1 -634 1873 1710 6 1008 189 0 0 0 chr5 55467373 55467394 -97069865 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1008 1966 165 115 1 chr5 55467591 55467973 -97069286 + Lx2 LINE L1 6574 7006 -2 6 1008 222 37 0 0 chr5 55467973 55468000 -97069259 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1008 384 257 7 85 chr5 55468000 55468153 -97069106 - HAL1-3A_ME LINE L1 -829 2029 1889 6 1008 2324 111 135 47 chr5 55468519 55468962 -97068297 + RLTR45 LTR ERVK 1 482 0 6 1008 353 336 27 36 chr5 55468965 55469289 -97067970 - L1MA4A LINE L1 -406 5894 5564 6 1008 478 147 0 0 chr5 55469292 55469367 -97067892 - RMER6C LTR ERVK -480 210 136 6 1008 186 103 0 0 chr5 55469456 55469485 -97067774 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 6 1008 314 0 49 0 chr5 55469505 55469546 -97067713 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1008 419 193 125 0 chr5 55469590 55469678 -97067581 - RMER6C LTR ERVK -621 99 1 6 1008 2083 137 6 0 chr5 55469746 55470067 -97067192 + ORR1A2 LTR MaLR 1 323 -4 6 1008 572 174 59 80 chr5 55470515 55470702 -97066557 - Lx7 LINE L1 -156 7540 7358 6 1008 400 288 25 0 chr5 55470766 55470884 -97066375 - Lx7 LINE L1 -329 7367 7247 6 1008 7599 18 0 1 chr5 55470898 55472335 -97064924 - L1Md_T LINE L1 -113 6469 5034 6 1008 779 28 0 0 chr5 55472335 55472441 -97064818 + L1Md_T LINE L1 6477 6582 0 6 1008 447 107 0 0 chr5 55472522 55472597 -97064662 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1008 951 285 27 0 chr5 55472603 55472863 -97064396 + Lx9 LINE L1 6333 6599 -1045 6 1008 1649 218 97 20 chr5 55472862 55473317 -97063942 + Lx9 LINE L1 6952 7441 -203 6 1008 328 244 0 11 chr5 55473317 55473408 -97063851 + Lx9 LINE L1 7381 7470 -174 6 1008 2332 234 97 100 chr5 55473472 55473664 -97063595 - RLTR13D6 LTR ERVK 0 983 844 6 1008 1655 60 60 0 chr5 55473664 55473897 -97063362 - L1_Mus1 LINE L1 0 6567 6321 6 1008 4809 92 26 67 chr5 55473897 55474690 -97062569 - RLTR13D6 LTR ERVK -141 761 1 6 1008 625 120 15 2 chr5 55474967 55475086 -97062173 + B1_Mus1 SINE Alu 1 125 -24 6 1008 483 18 0 0 chr5 55475251 55475307 -97061952 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1008 2175 208 39 20 chr5 55475510 55476080 -97061179 - Lx9 LINE L1 -1679 5965 5349 6 1008 1658 98 55 0 chr5 55476080 55476336 -97060923 + ORR1A3-int LTR MaLR 1008 1277 -686 6 1008 607 226 24 24 chr5 55476344 55476512 -97060747 - Lx9 LINE L1 -905 4942 4775 6 1008 622 252 6 36 chr5 55476522 55476687 -97060572 - Lx7 LINE L1 -441 7255 7096 6 1008 722 309 28 25 chr5 55476929 55477291 -97059968 + L1M3 LINE L1 3767 4129 -2011 6 1008 2760 222 50 52 chr5 55477365 55477734 -97059525 + RMER6D LTR ERVK 1 367 -353 6 1008 197 33 0 32 chr5 55477734 55477765 -97059494 + (TGG)n Simple_repeat Simple_repeat 3 32 0 6 1008 2760 222 50 52 chr5 55477765 55478112 -97059147 + RMER6D LTR ERVK 368 716 -4 6 1008 249 57 0 0 chr5 55478183 55478218 -97059041 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1008 826 333 127 13 chr5 55478455 55479076 -97058183 + Lx8 LINE L1 6637 7328 -145 6 1008 261 0 0 0 chr5 55479077 55479106 -97058153 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 6 1008 303 369 82 14 chr5 55479158 55479452 -97057807 + L1M5 LINE L1 4137 4450 -1696 6 1008 242 272 169 21 chr5 55479925 55480258 -97057001 + L1M3 LINE L1 4594 4976 -1164 6 1008 395 309 62 74 chr5 55480507 55480997 -97056262 + L1MB1 LINE L1 5706 6222 -69 6 1008 4580 63 52 2 chr5 55481049 55481666 -97055593 - L1_Mus2 LINE L1 -1 6565 5918 6 1008 3336 120 20 14 chr5 55481668 55481897 -97055362 + L1_Mus2 LINE L1 5370 5608 -275 6 1008 2203 136 146 14 chr5 55481897 55482323 -97054936 - RLTR45 LTR ERVK 0 482 1 6 1008 3336 60 0 20 chr5 55482323 55482643 -97054616 + L1_Mus2 LINE L1 5609 5922 -644 6 1008 896 294 16 65 chr5 55482655 55483022 -97054237 + Lx6 LINE L1 7086 7434 -26 6 1008 2730 84 10 40 chr5 55483139 55483560 -97053699 + L1_Mus2 LINE L1 6182 6566 0 6 1008 525 303 92 64 chr5 55483584 55484162 -97053097 + L1M3 LINE L1 5191 5780 -564 6 1008 186 43 0 0 chr5 55484455 55484478 -97052781 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1008 25 51 0 0 chr5 55484603 55484642 -97052617 + AT_rich Low_complexity Low_complexity 1 39 0 6 1008 219 184 0 55 chr5 55486014 55486123 -97051136 + (TCTCTG)n Simple_repeat Simple_repeat 2 104 0 6 1008 342 169 108 0 chr5 55486126 55486191 -97051068 - HAL1-3A_ME LINE L1 -809 2049 1978 6 1008 260 328 56 24 chr5 55486770 55486895 -97050364 + ERVL-B4-int LTR ERVL 3076 3204 -2510 6 1008 261 0 0 0 chr5 55487000 55487029 -97050230 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1008 402 338 64 7 chr5 55487029 55487169 -97050090 - B3 SINE B2 -32 184 37 6 1008 495 0 0 0 chr5 55487169 55487224 -97050035 + (A)n Simple_repeat Simple_repeat 1 55 0 6 1008 279 250 82 55 chr5 55487260 55487370 -97049889 + ERVL-B4-int LTR ERVL 3264 3376 -2338 6 1008 1004 147 107 0 chr5 55487543 55487720 -97049539 - Lx3C LINE L1 -278 6698 6503 6 1008 350 288 17 11 chr5 55487794 55487973 -97049286 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1008 454 264 106 17 chr5 55488622 55488857 -97048402 - Lx9 LINE L1 -4 7640 7385 6 1008 29929 109 6 20 chr5 55488866 55493972 -97043287 - L1_Mus1 LINE L1 -2 6565 1457 6 1008 1015 110 7 0 chr5 55493972 55494118 -97043141 - B1_Mm SINE Alu 0 147 1 6 1008 29929 115 7 25 chr5 55494118 55494203 -97043056 - L1_Mus1 LINE L1 -4427 1456 1454 6 1008 1247 113 11 0 chr5 55494203 55494388 -97042871 - B2_Mm1t SINE B2 -6 187 1 6 1008 29929 139 36 9 chr5 55494388 55495456 -97041803 - L1_Mus1 LINE L1 -4430 1453 355 6 1008 450 223 38 23 chr5 55495810 55495943 -97041316 - Lx9 LINE L1 -1 7643 7509 6 1008 535 307 11 32 chr5 55495995 55496180 -97041079 - B3A SINE B2 -16 182 2 6 1008 381 314 50 0 chr5 55496501 55496622 -97040637 + MTE2b LTR MaLR 1 127 -252 6 1008 488 78 0 25 chr5 55497345 55497424 -97039835 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 6 1008 2771 148 4 17 chr5 55497424 55497906 -97039353 + Lx3A LINE L1 6504 6979 -2 6 1008 22 0 0 0 chr5 55498195 55498217 -97039042 + AT_rich Low_complexity Low_complexity 1 22 0 7 1008 25 83 0 0 chr5 55498603 55498663 -97038596 + AT_rich Low_complexity Low_complexity 1 60 0 7 1008 250 324 0 0 chr5 55498860 55498928 -97038331 + ID4_ SINE ID 2 69 -14 7 1008 423 0 0 0 chr5 55498933 55498980 -97038279 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1008 234 62 0 0 chr5 55499027 55499059 -97038200 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 1008 1015 280 73 16 chr5 55499149 55499465 -97037794 - MTD LTR MaLR -53 366 33 7 1008 188 188 0 15 chr5 55499485 55499550 -97037709 + (TA)n Simple_repeat Simple_repeat 2 65 0 7 1008 334 211 35 35 chr5 55499826 55499939 -97037320 + Lx9 LINE L1 7524 7636 -8 7 1008 2065 116 3 62 chr5 55500006 55500347 -97036912 + ORR1A2 LTR MaLR 1 321 -6 1 1008 437 323 73 16 chr5 55500709 55500901 -97036358 + MTD LTR MaLR 1 203 -216 2 1008 2971 258 103 7 chr5 55500902 55501750 -97035509 - Lx9 LINE L1 -255 7389 6461 3 1008 369 171 44 22 chr5 55501752 55501842 -97035417 + Lx9 LINE L1 7383 7474 -170 3 1008 3550 66 26 0 chr5 55501842 55502309 -97034950 - L1_Mus1 LINE L1 -487 6080 5602 4 1008 330 26 0 0 chr5 55502314 55502353 -97034906 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1008 347 286 117 50 chr5 55502455 55502635 -97034624 + MTD LTR MaLR 214 405 -14 2 1008 306 283 74 89 chr5 55502643 55502845 -97034414 + MTD-int LTR MaLR 1 199 -1059 2 1008 486 0 0 0 chr5 55504306 55504360 -97032899 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1008 3859 125 33 0 chr5 55504799 55505381 -97031878 + MT2B LTR ERVL 1 601 0 7 1008 301 322 38 13 chr5 55505391 55505510 -97031749 + B1F SINE Alu 23 149 0 8 1008 436 323 76 87 chr5 55506820 55507095 -97030164 + B4 SINE B4 3 274 -18 9 1008 1458 71 10 0 chr5 55507240 55507438 -97029821 + L1_Mus2 LINE L1 6367 6566 0 1 1008 504 136 0 0 chr5 55507503 55507591 -97029668 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1008 371 343 85 20 chr5 55508120 55508367 -97028892 - B4A SINE B4 -27 265 3 1 1008 3765 199 92 12 chr5 55508588 55509468 -97027791 - Lx3C LINE L1 -2 6974 6025 1 1008 22 0 0 0 chr5 55509486 55509508 -97027751 + AT_rich Low_complexity Low_complexity 1 22 0 1 1008 2468 133 34 5 chr5 55509526 55509933 -97027326 - Lx3A LINE L1 -81 6900 6482 1 1008 2906 163 50 25 chr5 55509912 55510552 -97026707 - L1_Mur1 LINE L1 -140 5746 5063 1 1008 776 236 101 24 chr5 55510792 55511040 -97026219 - Lx9 LINE L1 -408 7236 6970 1 1008 351 0 0 0 chr5 55512267 55512306 -97024953 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1008 308 184 12 62 chr5 55512313 55512394 -97024865 + MT2A LTR ERVL 404 480 -53 1 1008 198 236 0 0 chr5 55512413 55512468 -97024791 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1008 331 191 0 14 chr5 55512492 55512561 -97024698 + MT2A LTR ERVL 406 473 -60 2 1008 377 341 67 0 chr5 55512563 55512698 -97024561 - MT2A LTR ERVL -87 514 371 2 1008 532 250 97 13 chr5 55512838 55512992 -97024267 - MT2A LTR ERVL -366 167 1 2 1008 256 402 11 0 chr5 55517814 55517906 -97019353 - B3A SINE B2 -30 168 76 2 1008 313 289 26 0 chr5 55518301 55518377 -97018882 - MTE2a LTR MaLR -71 308 231 2 1008 432 0 0 0 chr5 55518909 55518957 -97018302 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1008 195 129 0 0 chr5 55518959 55518990 -97018269 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1008 422 143 0 11 chr5 55519972 55520064 -97017195 - L1_Mus3 LINE L1 -8 6630 6540 2 1008 2452 58 3 0 chr5 55520064 55520376 -97016883 + L1_Mus3 LINE L1 5856 6168 -470 2 1008 1650 194 15 68 chr5 55520726 55521125 -97016134 - ORR1C1 LTR MaLR 0 378 1 2 1008 237 296 25 34 chr5 55521950 55522069 -97015190 - Lx8 LINE L1 -7 7466 7349 3 1008 1627 44 0 0 chr5 55522457 55522662 -97014597 - L1Md_A LINE L1 -1 6581 6377 3 1008 965 123 55 0 chr5 55522664 55522827 -97014432 + L1Md_A LINE L1 157 328 -6396 3 1008 1014 264 112 98 chr5 55522828 55523366 -97013893 - RMER19B LTR ERVK -18 884 340 3 1008 567 237 9 9 chr5 55523762 55523877 -97013382 - RMER19B LTR ERVK -586 316 202 3 1008 581 217 0 14 chr5 55524809 55524954 -97012305 + GA-rich Low_complexity Low_complexity 3 145 0 3 1008 678 286 48 68 chr5 55525004 55525458 -97011801 + L1MA5 LINE L1 5344 5788 -512 3 1008 1329 243 82 19 chr5 55525497 55525977 -97011282 + RMER19B LTR ERVK 142 642 -260 3 1008 236 279 29 0 chr5 55526028 55526096 -97011163 + L1MA5 LINE L1 5862 5931 -369 3 1008 34 55 0 0 chr5 55528098 55528153 -97009106 + AT_rich Low_complexity Low_complexity 1 55 0 3 1008 277 354 13 33 chr5 55528282 55528434 -97008825 - B4A SINE B4 -143 149 1 3 1008 564 248 66 0 chr5 55530061 55530198 -97007061 - B1_Mm SINE Alu -1 146 1 3 1008 4105 128 32 0 chr5 55530306 55530413 -97006846 - Lx LINE L1 -8 6646 6536 4 1008 189 0 0 0 chr5 55530413 55530434 -97006825 + (CCCA)n Simple_repeat Simple_repeat 1 21 0 4 1008 4105 128 32 0 chr5 55530434 55530959 -97006300 - Lx LINE L1 -119 6535 5995 4 1008 2651 163 19 53 chr5 55530959 55531407 -97005852 + Lx4B LINE L1 5357 5807 -70 4 1008 1215 125 11 11 chr5 55531407 55531593 -97005666 + B2_Mm1t SINE B2 3 188 -5 4 1008 2651 163 19 53 chr5 55531593 55531656 -97005603 + Lx4B LINE L1 5808 5851 -26 4 1008 428 184 9 37 chr5 55531653 55531760 -97005499 + Lx4B LINE L1 6082 6185 -873 4 1008 1138 238 118 10 chr5 55531760 55532066 -97005193 + Lx4B LINE L1 6672 7010 -48 4 1008 375 119 0 0 chr5 55532802 55532869 -97004390 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1008 26476 144 15 20 chr5 55532901 55539076 -96998183 - L1_Mus3 LINE L1 -5 6633 493 4 1008 591 15 0 0 chr5 55539314 55539382 -96997877 + (TC)n Simple_repeat Simple_repeat 2 69 0 4 1008 210 174 0 0 chr5 55539424 55539470 -96997789 + CT-rich Low_complexity Low_complexity 2 47 0 4 1008 392 344 87 0 chr5 55539554 55539749 -96997510 - Lx8 LINE L1 -220 7253 7042 4 1008 345 24 0 0 chr5 55539831 55539873 -96997386 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 4 1008 39500 28 4 6 chr5 55540056 55546212 -96991047 - L1Md_T LINE L1 -1 6581 452 5 1008 2599 204 133 17 chr5 55546721 55547359 -96989900 - RMER6D LTR ERVK -5 715 4 5 1008 209 231 19 0 chr5 55547554 55547606 -96989653 + A-rich Low_complexity Low_complexity 2 54 0 5 1008 24 32 0 0 chr5 55547751 55547782 -96989477 + AT_rich Low_complexity Low_complexity 1 31 0 5 1008 601 272 50 30 chr5 55548202 55548464 -96988795 + Lx9 LINE L1 7254 7520 -124 5 1008 22 0 0 0 chr5 55548501 55548523 -96988736 + AT_rich Low_complexity Low_complexity 1 22 0 5 1008 617 188 0 25 chr5 55548549 55548707 -96988552 + Lx9 LINE L1 7488 7641 -3 5 1008 489 290 0 8 chr5 55548990 55549115 -96988144 - B3 SINE B2 -1 215 92 5 1008 497 92 0 13 chr5 55549837 55549914 -96987345 + (TAA)n Simple_repeat Simple_repeat 3 78 0 5 1008 182 222 0 31 chr5 55550302 55550367 -96986892 + CT-rich Low_complexity Low_complexity 3 65 0 5 1008 252 217 0 16 chr5 55550374 55550435 -96986824 + (TTA)n Simple_repeat Simple_repeat 1 60 0 6 1008 2815 87 0 3 chr5 55550464 55550845 -96986414 + L1_Mus1 LINE L1 6188 6567 0 6 1008 23 0 0 0 chr5 55550846 55550869 -96986390 + AT_rich Low_complexity Low_complexity 1 23 0 6 1008 498 33 0 0 chr5 55551089 55551149 -96986110 + (TA)n Simple_repeat Simple_repeat 1 60 0 6 1008 23 78 0 0 chr5 55551354 55551405 -96985854 + AT_rich Low_complexity Low_complexity 1 51 0 6 1008 1062 101 0 13 chr5 55551583 55551733 -96985526 + B1_Mus1 SINE Alu 1 148 0 6 1008 6537 56 37 1 chr5 55551750 55552598 -96984661 + L1_Mus1 LINE L1 5698 6638 0 6 1008 895 330 17 43 chr5 55552770 55553118 -96984141 + Lx8 LINE L1 6932 7270 -203 6 1008 31850 18 1 3 chr5 55553716 55559040 -96978219 + L1Md_A LINE L1 297 5612 -747 6 1008 8607 21 1 0 chr5 55559040 55560035 -96977224 + L1Md_A LINE L1 5587 6582 0 6 1008 1320 238 39 27 chr5 55560035 55560086 -96977173 + L1Md_A LINE L1 5613 5672 -687 6 1008 663 323 76 30 chr5 55560194 55560523 -96976736 + Lx8 LINE L1 6873 7216 -257 7 1008 22 35 0 0 chr5 55560587 55560616 -96976643 + AT_rich Low_complexity Low_complexity 1 29 0 7 1008 229 319 0 0 chr5 55560639 55560711 -96976548 - L1MD LINE L1 -3239 2907 2836 7 1008 5805 14 0 0 chr5 55561995 55562649 -96974610 + L1Md_T LINE L1 5928 6581 -1 7 1008 189 37 0 0 chr5 55562707 55562734 -96974525 - L2a LINE L2 0 3426 3400 7 1008 22 56 0 0 chr5 55563495 55563531 -96973728 + AT_rich Low_complexity Low_complexity 1 36 0 7 1008 269 366 12 0 chr5 55563631 55563713 -96973546 - MTD LTR MaLR -257 162 80 7 1008 809 259 76 97 chr5 55563764 55564209 -96973050 + RLTR12B LTR ERVK 80 515 -13 7 1008 442 200 12 0 chr5 55564222 55564307 -96972952 - MTD LTR MaLR -332 87 2 7 1008 871 238 44 39 chr5 55564348 55564622 -96972637 + Lx5 LINE L1 6738 7053 -5 7 1008 22 0 0 0 chr5 55565277 55565299 -96971960 + AT_rich Low_complexity Low_complexity 1 22 0 7 1008 6223 146 22 3 chr5 55567543 55568958 -96968301 + Lx2 LINE L1 5087 6541 -456 8 1008 1194 179 33 21 chr5 55568949 55569189 -96968070 + Lx2 LINE L1 6746 6988 -9 8 1008 261 57 0 0 chr5 55569189 55569224 -96968035 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 8 1008 9851 22 0 0 chr5 55569241 55570400 -96966859 - L1Md_T LINE L1 -1172 4711 3553 8 1008 7570 17 0 0 chr5 55570396 55571266 -96965993 + L1Md_T LINE L1 4717 5586 -297 8 1008 8344 36 1 0 chr5 55571266 55572261 -96964998 + L1Md_T LINE L1 5587 6582 0 8 1008 26 50 0 0 chr5 55572408 55572448 -96964811 + AT_rich Low_complexity Low_complexity 1 40 0 8 15 2498 282 117 31 chr5 55573890 55574986 -96962273 - Lx7 LINE L1 -416 7280 6091 8 1009 654 242 21 16 chr5 55575536 55575729 -96961530 + L1_Mur3 LINE L1 4378 4571 -1309 8 1009 2057 255 85 29 chr5 55575767 55576639 -96960620 - L1_Mur3 LINE L1 -865 5015 4095 8 1009 272 276 0 0 chr5 55576773 55576831 -96960428 - Lx8 LINE L1 -710 6763 6706 8 1009 192 270 0 0 chr5 55576854 55576991 -96960268 + CT-rich Low_complexity Low_complexity 2 138 0 8 1009 416 332 91 20 chr5 55577010 55577262 -96959997 - Lx8 LINE L1 -1024 6449 6180 8 1009 806 357 63 19 chr5 55577316 55577884 -96959375 + Lx8 LINE L1 6805 7397 -76 8 1009 529 277 53 26 chr5 55577975 55578164 -96959095 + B3 SINE B2 12 205 -11 9 1009 29 0 0 0 chr5 55578176 55578205 -96959054 + AT_rich Low_complexity Low_complexity 1 29 0 9 1009 1843 352 39 17 chr5 55578375 55579192 -96958067 + Lx8 LINE L1 6483 7317 -156 9 1009 200 94 31 0 chr5 55579397 55579429 -96957830 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 9 1009 1755 174 6 59 chr5 55580150 55580487 -96956772 - ORR1A4 LTR MaLR -8 321 3 9 1009 349 333 78 33 chr5 55580487 55580604 -96956655 + Lx8 LINE L1 7034 7161 -312 9 1009 1501 58 5 0 chr5 55580604 55580794 -96956465 + B2_Mm1t SINE B2 1 191 -2 9 1009 349 333 78 33 chr5 55580794 55580856 -96956403 + Lx8 LINE L1 7162 7221 -252 9 1009 1063 222 138 17 chr5 55580876 55581224 -96956035 - L1_Mur3 LINE L1 -556 5324 4935 9 1009 1628 241 31 130 chr5 55581240 55581918 -96955341 - RMER19C LTR ERVK 0 611 1 9 1009 3658 253 115 17 chr5 55581920 55582481 -96954778 + Lx6 LINE L1 6303 6905 -555 9 1009 549 0 0 0 chr5 55582481 55582542 -96954717 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1009 3658 253 115 17 chr5 55582542 55583035 -96954224 + Lx6 LINE L1 6906 7459 -1 9 1009 21 71 0 0 chr5 55583141 55583183 -96954076 + AT_rich Low_complexity Low_complexity 1 42 0 1 1009 454 288 117 35 chr5 55584166 55584396 -96952863 + L1M4c LINE L1 1143 1391 -4993 1 1009 520 112 0 59 chr5 55584400 55584485 -96952774 + B1_Mus2 SINE Alu 59 138 -9 1 1009 226 0 0 56 chr5 55584485 55584521 -96952738 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1009 202 205 0 0 chr5 55584521 55584560 -96952699 + GA-rich Low_complexity Low_complexity 2 40 0 1 1009 345 291 7 39 chr5 55584626 55584780 -96952479 + L1M4c LINE L1 1471 1619 -4765 1 1009 333 355 36 62 chr5 55584780 55585005 -96952254 + MTE2b LTR MaLR 1 219 -160 1 1009 206 62 0 30 chr5 55585139 55585172 -96952087 + (TATG)n Simple_repeat Simple_repeat 1 32 0 1 1009 627 253 162 63 chr5 55585203 55585536 -96951723 + MTE2b-int LTR MaLR 1208 1573 -7 1 1009 354 239 0 0 chr5 55585544 55585611 -96951648 + MTE2b LTR MaLR 2 68 -311 1 1009 21 57 0 0 chr5 55586332 55586367 -96950892 + AT_rich Low_complexity Low_complexity 1 35 0 1 1009 340 275 68 12 chr5 55586741 55586989 -96950270 + L1M4c LINE L1 5410 5672 -720 1 1009 347 344 43 25 chr5 55587004 55587165 -96950094 + Lx8 LINE L1 7052 7215 -258 1 1009 22 56 0 0 chr5 55587358 55587394 -96949865 + AT_rich Low_complexity Low_complexity 1 36 0 1 1009 1830 188 3 0 chr5 55587423 55587758 -96949501 - Lx3C LINE L1 -527 6449 6114 1 1009 444 19 0 0 chr5 55587867 55587920 -96949339 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1009 1015 282 70 35 chr5 55588041 55588353 -96948906 + MTD LTR MaLR 97 419 0 1 1009 198 290 146 53 chr5 55588672 55588843 -96948416 - MIRb SINE MIR -9 259 73 1 1009 1980 320 87 27 chr5 55589552 55590513 -96946746 + Lx8 LINE L1 6392 7410 -63 1 1009 238 330 0 0 chr5 55590875 55590981 -96946278 + (TG)n Simple_repeat Simple_repeat 1 106 0 1 1009 21 0 0 0 chr5 55591692 55591713 -96945546 + AT_rich Low_complexity Low_complexity 1 21 0 1 1009 21 71 0 0 chr5 55592209 55592251 -96945008 + AT_rich Low_complexity Low_complexity 1 42 0 1 1009 211 273 0 25 chr5 55592324 55592403 -96944856 + CT-rich Low_complexity Low_complexity 4 80 0 1 1009 1631 270 107 35 chr5 55592491 55593167 -96944092 - Lx7 LINE L1 0 7696 6973 1 1009 37750 48 0 3 chr5 55593172 55599780 -96937479 - L1Md_T LINE L1 0 6585 1 1 1009 274 212 21 86 chr5 55599773 55599866 -96937393 - Lx7 LINE L1 -685 7011 6925 1 1009 8096 38 16 1 chr5 55599863 55600903 -96936356 - L1Md_F3 LINE L1 0 6584 5529 1 1009 1083 174 114 0 chr5 55600899 55601118 -96936141 - Lx7 LINE L1 -756 6940 6697 1 1009 1502 219 71 35 chr5 55601122 55601519 -96935740 - L1_Mur3 LINE L1 -3412 2468 2064 1 1009 444 122 0 0 chr5 55601519 55601601 -96935658 + (TG)n Simple_repeat Simple_repeat 2 83 0 1 1009 1502 219 71 35 chr5 55601601 55601710 -96935549 - L1_Mur3 LINE L1 -3817 2063 1945 1 1009 391 287 17 79 chr5 55601704 55601882 -96935377 + L1_Mur3 LINE L1 423 589 -7123 1 1009 447 68 0 0 chr5 55601987 55602046 -96935213 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1 1009 1055 362 80 15 chr5 55602585 55603261 -96933998 - Lx8 LINE L1 -557 6916 6197 1 1009 519 45 0 0 chr5 55603397 55603463 -96933796 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1009 23 86 0 0 chr5 55604272 55604330 -96932929 + AT_rich Low_complexity Low_complexity 1 58 0 1 1009 21 0 0 0 chr5 55604596 55604617 -96932642 + AT_rich Low_complexity Low_complexity 1 21 0 1 1009 182 91 30 0 chr5 55605302 55605335 -96931924 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 1 1009 461 71 14 0 chr5 55605335 55605405 -96931854 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1 1009 449 110 14 0 chr5 55605470 55605543 -96931716 + (TA)n Simple_repeat Simple_repeat 1 74 0 1 1009 397 333 95 36 chr5 55605566 55605787 -96931472 - Tigger5 DNA MER2_type -2171 235 2 1 1009 288 0 0 0 chr5 55605794 55605826 -96931433 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1009 267 314 124 46 chr5 55606287 55606504 -96930755 - MLT1J-int LTR MaLR -962 425 192 1 1009 489 227 62 18 chr5 55606991 55607103 -96930156 + RMER4B LTR ERVK 279 395 -190 1 1009 1073 201 69 23 chr5 55607610 55607982 -96929277 + RMER6D LTR ERVK 1 611 -79 1 1009 5764 62 4 8 chr5 55607982 55608729 -96928530 + L1Md_F2 LINE L1 5827 6570 -12 1 1009 944 209 61 12 chr5 55608729 55608800 -96928459 + RMER6D LTR ERVK 612 689 -1 1 1009 3569 189 51 26 chr5 55608800 55609675 -96927584 - L1_Mur2 LINE L1 -3720 2157 1261 1 1009 6656 71 8 0 chr5 55609685 55610547 -96926712 - L1_Mus1 LINE L1 -1 6566 5698 1 1009 2861 114 6 18 chr5 55610562 55611052 -96926207 - L1_Mm LINE L1 -3798 2085 1602 1 1009 392 176 20 0 chr5 55611030 55611132 -96926127 - L1_Mur2 LINE L1 -5812 1274 1171 1 1009 1039 137 6 0 chr5 55611129 55611311 -96925948 - L1_Mm LINE L1 -1814 4069 3887 1 1009 749 232 33 14 chr5 55611307 55611517 -96925742 - L1_Mur2 LINE L1 -5975 1111 898 1 1009 21 57 0 0 chr5 55614869 55614904 -96922355 + AT_rich Low_complexity Low_complexity 1 35 0 1 1009 492 18 0 0 chr5 55615349 55615406 -96921853 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 1 1009 258 56 0 0 chr5 55615411 55615447 -96921812 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1009 10794 95 37 33 chr5 55615715 55618283 -96918976 - L1VL1 LINE L1 -2891 2992 409 1 1009 844 231 134 47 chr5 55618497 55618796 -96918463 + MTC LTR MaLR 89 413 -8 1 1009 456 19 0 0 chr5 55618969 55619022 -96918237 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1009 606 331 82 30 chr5 55619378 55619783 -96917476 - Lx8 LINE L1 -7 7466 7041 1 1009 5158 90 14 1 chr5 55619799 55620529 -96916730 - Lx7 LINE L1 -1908 5788 5055 1 1009 5796 125 31 16 chr5 55620534 55621515 -96915744 + Lx3A LINE L1 5985 6979 -2 1 1009 490 271 207 59 chr5 55621515 55621861 -96915398 - Lx8 LINE L1 -460 7013 6614 1 1009 339 345 89 56 chr5 55621910 55622106 -96915153 + B4A SINE B4 2 188 -104 1 1009 256 24 24 24 chr5 55622106 55622148 -96915111 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 1 1009 339 345 89 56 chr5 55622148 55622221 -96915038 + B4A SINE B4 189 279 -13 1 1009 624 106 0 0 chr5 55622261 55622355 -96914904 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 1009 385 352 98 23 chr5 55622540 55622967 -96914292 - L1MD LINE L1 -1582 4564 4106 1 1009 198 311 48 56 chr5 55623095 55623221 -96914038 - L2a LINE L2 -1 3425 3301 1 1009 570 29 0 0 chr5 55623251 55623319 -96913940 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1009 2319 145 133 45 chr5 55623788 55624278 -96912981 + RMER16 LTR ERVK 1 533 0 1 1009 328 362 60 18 chr5 55624951 55625117 -96912142 - HAL1-3A_ME LINE L1 -402 2456 2284 1 1009 240 143 0 0 chr5 55625117 55625173 -96912086 + (T)n Simple_repeat Simple_repeat 1 56 0 1 1009 1045 72 51 0 chr5 55625174 55625312 -96911947 - B1_Mm SINE Alu 0 147 3 1 1009 35 41 0 0 chr5 55625612 55625661 -96911598 + AT_rich Low_complexity Low_complexity 1 49 0 1 1009 2833 89 14 9 chr5 55626231 55626650 -96910609 + BGLII LTR ERVK 1 421 0 1 1009 6639 139 19 12 chr5 55627061 55627693 -96909566 + Lx2 LINE L1 5902 6552 -445 1 1009 3406 60 45 30 chr5 55627693 55628161 -96909098 - MT2C_Mm LTR ERVL 0 475 1 1 1009 6639 139 19 12 chr5 55628161 55628615 -96908644 + Lx2 LINE L1 6553 6996 -1 1 1009 236 149 21 0 chr5 55628791 55628838 -96908421 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 1 1009 23 54 0 0 chr5 55629398 55629435 -96907824 + AT_rich Low_complexity Low_complexity 1 37 0 1 1009 806 346 34 23 chr5 55629706 55630146 -96907113 - Lx8 LINE L1 -575 6898 6454 1 1009 5317 175 22 11 chr5 55630515 55631484 -96905775 - Lx4A LINE L1 -3 7055 6077 1 1009 684 297 97 74 chr5 55635189 55635582 -96901677 - MTD LTR MaLR 0 419 18 1 1009 937 235 69 44 chr5 55637122 55637483 -96899776 - ORR1D1 LTR MaLR -4 370 1 1 1009 26 0 0 0 chr5 55637961 55637987 -96899272 + AT_rich Low_complexity Low_complexity 1 26 0 1 1009 216 111 0 0 chr5 55638323 55638359 -96898900 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1009 405 0 0 0 chr5 55638545 55638590 -96898669 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1009 2262 104 32 28 chr5 55639190 55639728 -96897531 - L1_Mur1 LINE L1 -4287 1599 1063 1 1009 447 198 39 10 chr5 55639734 55639836 -96897423 - L1_Mur1 LINE L1 -6702 282 178 1 1009 11707 111 13 106 chr5 55639833 55639961 -96897298 + L1_Mur1 LINE L1 2387 2518 -3368 1 1009 992 74 74 0 chr5 55639961 55640096 -96897163 + B1_Mm SINE Alu 1 145 -2 1 1009 261 0 0 0 chr5 55640098 55640127 -96897132 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1 1009 11707 111 13 106 chr5 55640127 55640463 -96896796 + L1_Mur1 LINE L1 2519 2824 -3062 1 1009 270 0 0 0 chr5 55640463 55640493 -96896766 + (CCA)n Simple_repeat Simple_repeat 2 31 0 1 1009 11707 111 13 106 chr5 55640493 55642485 -96894774 + L1_Mur1 LINE L1 2825 4619 -1267 1 1009 664 283 37 25 chr5 55642502 55642745 -96894514 + RMER1C Other Other 1074 1319 -23 1 1009 441 0 0 0 chr5 55642829 55642878 -96894381 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1 1009 663 196 0 0 chr5 55643953 55644091 -96893168 + A-rich Low_complexity Low_complexity 1 138 0 1 1009 2950 156 10 14 chr5 55644270 55644804 -96892455 - Lx2 LINE L1 -764 6233 5699 1 1009 307 286 40 10 chr5 55644911 55645010 -96892249 + RMER15 LTR ERVL 425 526 -49 1 1009 232 339 0 0 chr5 55645145 55645210 -96892049 - ID4_ SINE ID -14 69 5 1 1009 226 171 0 0 chr5 55645932 55645967 -96891292 - L1_Mus2 LINE L1 -492 6074 6040 1 1009 3258 90 10 47 chr5 55645967 55646457 -96890802 + L1_Mus2 LINE L1 6095 6566 0 1 1009 1637 55 0 146 chr5 55647146 55647201 -96890058 + L1Md_F3 LINE L1 6340 6394 -190 1 1009 1181 49 0 0 chr5 55647201 55647344 -96889915 + B1_Mus2 SINE Alu 5 147 0 1 1009 1637 55 0 146 chr5 55647344 55647562 -96889697 + L1Md_F3 LINE L1 6395 6573 -11 1 1009 221 245 19 0 chr5 55647974 55648027 -96889232 + GA-rich Low_complexity Low_complexity 6 59 0 1 1009 527 276 30 0 chr5 55648144 55648278 -96888981 + L1VL4 LINE L1 172 309 -5993 1 1009 330 223 26 13 chr5 55648570 55648678 -96888581 - RLTR6-int LTR ERV1 -2743 5035 4979 1 1009 2029 91 0 48 chr5 55649013 55649301 -96887958 + MusHAL1 LINE L1 1784 2067 -645 1 1009 3469 10 10 0 chr5 55649301 55649693 -96887566 - MTA_Mm LTR MaLR 0 396 1 1 1009 9017 36 5 1 chr5 55649693 55650785 -96886474 - MTA_Mm-int LTR MaLR 0 1098 3 1 1009 3632 18 121 0 chr5 55650789 55651229 -96886030 - MT2_Mm LTR ERVL 0 493 1 1 1009 2029 91 0 48 chr5 55651229 55651268 -96885991 + MusHAL1 LINE L1 2068 2100 -612 1 1009 9002 136 19 7 chr5 55651253 55653535 -96883724 + L1_Mus4 LINE L1 4326 6636 0 1 1009 22 0 0 0 chr5 55653618 55653640 -96883619 + AT_rich Low_complexity Low_complexity 1 22 0 2 1009 270 231 31 0 chr5 55654870 55654935 -96882324 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 2 1009 717 165 0 0 chr5 55655916 55656038 -96881221 + CT-rich Low_complexity Low_complexity 13 134 0 2 1009 1248 91 0 0 chr5 55656038 55656214 -96881045 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 2 1009 252 0 0 0 chr5 55656225 55656253 -96881006 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1009 267 367 67 0 chr5 55656313 55656433 -96880826 + Lx8 LINE L1 7193 7320 -153 2 1009 1506 167 14 29 chr5 55656451 55656729 -96880530 - Lx4A LINE L1 -265 6793 6520 2 1009 479 138 12 0 chr5 55656732 55656812 -96880447 - Lx4A LINE L1 -1179 5879 5799 2 1009 1193 265 7 14 chr5 55656789 55657099 -96880160 + Lx4B LINE L1 6755 7051 -7 2 1009 207 146 0 0 chr5 55657213 55657254 -96880005 + (AAATG)n Simple_repeat Simple_repeat 5 45 0 2 1009 255 450 0 7 chr5 55657381 55657531 -96879728 - ID_B1 SINE B4 -74 150 2 2 1009 963 136 0 0 chr5 55658043 55658183 -96879076 - B1_Mus1 SINE Alu -8 140 1 2 1009 3102 59 10 0 chr5 55658213 55658605 -96878654 - MTA_Mm LTR MaLR 0 396 1 2 1009 317 250 103 8 chr5 55659925 55660042 -96877217 - MER70A LTR ERVL 0 472 345 2 1009 375 82 27 14 chr5 55660044 55660118 -96877141 + (TA)n Simple_repeat Simple_repeat 2 76 0 2 1009 4596 79 33 5 chr5 55660245 55660880 -96876379 - L1Md_F2 LINE L1 -2 6580 5928 2 1009 33242 86 11 2 chr5 55660878 55666049 -96871210 - L1Md_F LINE L1 -82 5801 578 2 1009 443 379 20 15 chr5 55666108 55666309 -96870950 - MTC LTR MaLR -134 287 86 2 1009 315 0 0 0 chr5 55666320 55666355 -96870904 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1009 4641 156 31 1 chr5 55666365 55667136 -96870123 + Lx3C LINE L1 6175 6968 -8 2 1009 286 230 52 39 chr5 55667915 55667992 -96869267 + Lx8 LINE L1 6249 6326 -1147 2 1009 502 311 112 43 chr5 55667992 55668180 -96869079 - B4A SINE B4 -91 201 1 2 1009 443 345 117 15 chr5 55669889 55670095 -96867164 - B4A SINE B4 -61 231 5 2 1009 26 0 0 0 chr5 55670904 55670930 -96866329 + AT_rich Low_complexity Low_complexity 1 26 0 2 1009 23 33 0 0 chr5 55671050 55671080 -96866179 + AT_rich Low_complexity Low_complexity 1 30 0 2 1009 648 0 0 0 chr5 55671154 55671226 -96866033 + (TTCC)n Simple_repeat Simple_repeat 2 73 0 2 1009 23 33 0 0 chr5 55672111 55672141 -96865118 + AT_rich Low_complexity Low_complexity 1 30 0 2 1009 4874 127 7 14 chr5 55672141 55672914 -96864345 - Lx3A LINE L1 -12 6969 6203 2 1009 280 120 22 27 chr5 55672914 55672986 -96864273 + L1_Mur1 LINE L1 4843 4912 -965 2 1009 330 364 116 35 chr5 55675081 55675485 -96861774 - L1M4b LINE L1 -6405 929 493 2 1009 28 29 0 0 chr5 55677035 55677070 -96860189 + AT_rich Low_complexity Low_complexity 1 35 0 2 1009 419 242 69 23 chr5 55677288 55677419 -96859840 + Charlie22a DNA MER1_type 36 172 -319 2 1009 3809 174 40 1 chr5 55678192 55678919 -96858340 - Lx2 LINE L1 -1 6996 6242 2 1009 479 242 68 5 chr5 55679119 55679268 -96857991 - Lx7 LINE L1 -74 5806 5662 2 1009 4240 220 74 7 chr5 55679322 55680238 -96857021 + Lx4B LINE L1 6081 7058 0 2 1009 381 215 0 0 chr5 55680444 55680537 -96856722 + CT-rich Low_complexity Low_complexity 2 94 0 2 1009 892 272 155 17 chr5 55682549 55683031 -96854228 - Lx9 LINE L1 -24 7620 7073 2 1009 4827 40 0 0 chr5 55683698 55684274 -96852985 - L1Md_F2 LINE L1 -12 6570 5995 2 1009 357 24 0 0 chr5 55685907 55685949 -96851310 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1009 430 362 42 21 chr5 55688279 55688468 -96848791 - B4A SINE B4 -93 199 7 2 1009 502 85 54 45 chr5 55688694 55688805 -96848454 - L1Md_F3 LINE L1 0 6584 6473 2 1009 21 0 0 0 chr5 55690262 55690283 -96846976 + AT_rich Low_complexity Low_complexity 1 21 0 2 1009 22 56 0 0 chr5 55690480 55690516 -96846743 + AT_rich Low_complexity Low_complexity 1 36 0 2 1009 1574 179 96 18 chr5 55694037 55694372 -96842887 + ORR1B2 LTR MaLR 3 363 -4 2 1009 22 70 0 0 chr5 55694600 55694643 -96842616 + AT_rich Low_complexity Low_complexity 1 43 0 2 1009 766 233 12 6 chr5 55694658 55694818 -96842441 - U1 snRNA snRNA -2 163 3 2 1009 27 0 0 0 chr5 55694882 55694909 -96842350 + AT_rich Low_complexity Low_complexity 1 27 0 2 1009 21 57 0 0 chr5 55694916 55694951 -96842308 + AT_rich Low_complexity Low_complexity 1 35 0 2 1009 319 308 191 16 chr5 55695375 55695679 -96841580 + L1MC4 LINE L1 5568 5924 -2118 2 1009 739 220 45 0 chr5 55695754 55695917 -96841342 + RMER6C LTR ERVK 1 175 -545 2 1009 2281 217 92 34 chr5 55695956 55696566 -96840693 + RMER6C LTR ERVK 1 645 -45 2 1009 22 35 0 0 chr5 55697137 55697166 -96840093 + AT_rich Low_complexity Low_complexity 1 29 0 2 1009 459 0 0 0 chr5 55697516 55697567 -96839692 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1009 402 21 0 0 chr5 55697567 55697613 -96839646 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1009 372 406 22 35 chr5 55697618 55697845 -96839414 - B4A SINE B4 -41 251 28 2 1009 10868 74 4 1 chr5 55698046 55700257 -96837002 + L1Md_F LINE L1 528 2745 -3138 2 1009 988 65 0 0 chr5 55700257 55700396 -96836863 + L1Md_F2 LINE L1 6443 6581 -1 2 1009 223 192 27 27 chr5 55700715 55700790 -96836469 + (TTTG)n Simple_repeat Simple_repeat 1 75 0 2 1009 1031 58 7 0 chr5 55700790 55700927 -96836332 - B1_Mm SINE Alu -1 146 9 2 1009 308 270 96 67 chr5 55701636 55701771 -96835488 + MLT1A1 LTR MaLR 256 394 -14 2 1009 442 288 51 28 chr5 55702238 55702448 -96834811 - RLTR9E LTR ERVK -3 406 153 2 1009 270 0 0 0 chr5 55702499 55702529 -96834730 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 2 1009 21 0 0 0 chr5 55703104 55703125 -96834134 + AT_rich Low_complexity Low_complexity 1 21 0 2 1009 333 337 32 42 chr5 55703163 55703352 -96833907 + LTR33 LTR ERVL 329 515 0 2 1009 4328 160 15 5 chr5 55703508 55704289 -96832970 - L1_Mus4 LINE L1 -672 5211 4423 2 1009 3903 162 8 19 chr5 55704271 55704441 -96832818 + L1_Mus4 LINE L1 5187 5355 -528 2 1009 2250 76 3 3 chr5 55704441 55704746 -96832513 + L1_Mus2 LINE L1 6262 6566 0 2 126 6793 136 6 5 chr5 55704746 55706033 -96831226 + L1_Mus4 LINE L1 5356 6636 0 2 1010 3770 267 19 23 chr5 55706198 55707354 -96829905 - Lx9 LINE L1 -1 7643 6493 2 1010 22 0 0 0 chr5 55707376 55707398 -96829861 + AT_rich Low_complexity Low_complexity 1 22 0 2 1010 648 38 0 0 chr5 55708875 55708954 -96828305 + (TTTTC)n Simple_repeat Simple_repeat 1 79 0 2 1010 922 162 10 7 chr5 55708956 55709262 -96827997 + CT-rich Low_complexity Low_complexity 1 306 0 2 1010 8095 123 33 26 chr5 55709272 55710611 -96826648 - Lx3A LINE L1 -8 6973 5626 2 1010 534 31 0 0 chr5 55710611 55710675 -96826584 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1010 809 39 0 19 chr5 55710677 55710781 -96826478 - L1_Mur1 LINE L1 -715 5171 5070 2 1010 5513 114 23 4 chr5 55710769 55711314 -96825945 - L1_Mur1 LINE L1 -4116 1770 1169 2 1010 366 23 0 0 chr5 55711314 55711357 -96825902 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 1010 5513 161 83 9 chr5 55711357 55712288 -96824971 - L1_Mur1 LINE L1 -5816 1168 211 2 1010 188 406 79 0 chr5 55712978 55713079 -96824180 + MIRb SINE MIR 117 225 -43 2 1010 755 280 131 51 chr5 55713304 55713639 -96823620 - ORR1D2 LTR MaLR 0 370 9 2 1010 926 269 53 48 chr5 55713928 55714389 -96822870 - BGLII_B LTR ERVK -11 430 16 2 1010 864 109 29 0 chr5 55714389 55714526 -96822733 + L1Md_F2 LINE L1 5078 5218 -665 2 1010 2475 91 8 3 chr5 55714969 55715334 -96821925 - L1Md_F2 LINE L1 0 6582 6216 2 1010 5509 36 2 0 chr5 55715334 55716138 -96821121 + L1Md_F2 LINE L1 5431 6235 -347 2 1010 774 40 43 93 chr5 55716190 55716329 -96820930 + L1Md_F2 LINE L1 6452 6583 -1 2 1010 22 35 0 0 chr5 55716360 55716389 -96820870 + AT_rich Low_complexity Low_complexity 1 29 0 2 1010 1050 93 0 0 chr5 55716428 55716567 -96820692 + B1_Mm SINE Alu 2 140 -7 2 1010 23 54 0 0 chr5 55717284 55717321 -96819938 + AT_rich Low_complexity Low_complexity 1 37 0 2 1010 723 323 69 77 chr5 55718177 55718657 -96818602 - Lx8 LINE L1 -3 7470 7010 2 1010 675 0 0 0 chr5 55718657 55718732 -96818527 + (TC)n Simple_repeat Simple_repeat 1 75 0 2 1010 723 323 69 77 chr5 55718732 55718859 -96818400 - Lx8 LINE L1 -464 7009 6868 2 1010 22 70 0 0 chr5 55718957 55719000 -96818259 + AT_rich Low_complexity Low_complexity 1 43 0 2 1010 186 133 0 0 chr5 55719002 55719032 -96818227 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1010 198 327 0 0 chr5 55719031 55719135 -96818124 + T-rich Low_complexity Low_complexity 6 109 0 2 1010 1901 186 114 3 chr5 55719599 55719986 -96817273 - Lx4B LINE L1 -472 6586 6157 2 1010 478 129 139 39 chr5 55719988 55720117 -96817142 + Lx LINE L1 6513 6654 0 2 1010 495 0 0 0 chr5 55720174 55720229 -96817030 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1010 310 309 12 0 chr5 55720379 55720463 -96816796 - 4.5SRNA scRNA scRNA -5 89 5 2 1010 322 319 48 105 chr5 55720700 55720928 -96816331 - MLT1D LTR MaLR -2 503 289 2 1010 541 218 128 13 chr5 55721153 55721302 -96815957 - ORR1B1 LTR MaLR -228 166 1 2 1010 385 322 122 47 chr5 55721351 55721605 -96815654 + Lx8 LINE L1 6848 7120 -353 2 1010 297 342 124 21 chr5 55721996 55722238 -96815021 - LTR16C LTR ERVL 0 489 223 2 1010 1049 75 6 12 chr5 55722695 55722856 -96814403 - L1Md_F2 LINE L1 -2 6580 6421 2 1010 1787 204 31 8 chr5 55723285 55723641 -96813618 + ORR1C1 LTR MaLR 1 364 -14 2 1010 321 294 45 0 chr5 55723842 55724043 -96813216 - L1MA8 LINE L1 -54 6237 6028 2 1010 5493 161 92 1 chr5 55724357 55725795 -96811464 - Lx2B LINE L1 -8 6992 5438 2 1010 616 156 0 0 chr5 55725785 55725894 -96811365 + L1_Mur2 LINE L1 4515 4623 -1254 2 1010 912 155 0 6 chr5 55725896 55726052 -96811207 + Lx2B LINE L1 6557 6711 -289 2 1010 1080 196 36 0 chr5 55726049 55726274 -96810985 + L1_Mur2 LINE L1 4630 4862 -1015 2 1010 29486 86 6 83 chr5 55726278 55729519 -96807740 - L1Md_F2 LINE L1 -12 6570 3446 3 1010 500 45 34 11 chr5 55729519 55729608 -96807651 + (TTATA)n Simple_repeat Simple_repeat 2 92 0 3 1010 29486 89 2 116 chr5 55729608 55731543 -96805716 - L1Md_F2 LINE L1 -2438 3445 1978 3 1010 237 33 0 0 chr5 55731543 55731573 -96805686 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1010 29486 106 39 64 chr5 55731573 55732988 -96804271 - L1Md_F2 LINE L1 -3906 1977 515 3 1010 2900 200 2 12 chr5 55732989 55733571 -96803688 + L1_Mur2 LINE L1 4855 5430 -447 2 1010 261 145 0 0 chr5 55733718 55733780 -96803479 + (T)n Simple_repeat Simple_repeat 1 62 0 3 1010 1060 82 0 20 chr5 55733780 55733930 -96803329 - B1_Mus1 SINE Alu 0 148 2 3 1010 34 0 0 0 chr5 55733939 55733973 -96803286 + AT_rich Low_complexity Low_complexity 1 34 0 3 1010 555 316 35 51 chr5 55733997 55734254 -96803005 - Lx8 LINE L1 -180 7293 7041 3 1010 244 212 33 76 chr5 55734636 55734820 -96802439 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 3 1010 231 178 47 47 chr5 55734772 55734878 -96802381 + (TA)n Simple_repeat Simple_repeat 2 107 0 3 1010 29 0 0 0 chr5 55735444 55735473 -96801786 + AT_rich Low_complexity Low_complexity 1 29 0 3 1010 7278 49 5 1 chr5 55735474 55736973 -96800286 - L1Md_F2 LINE L1 -109 6473 4968 3 1010 232 133 0 0 chr5 55736961 55736991 -96800268 + L1Md_F LINE L1 93 122 -6397 3 1010 478 339 79 55 chr5 55737259 55737549 -96799710 + MTEa LTR MaLR 18 314 -65 3 1010 463 356 40 46 chr5 55737260 55737631 -96799628 + MT2A LTR ERVL 19 387 -146 3 1010 1085 162 65 23 chr5 55738256 55738471 -96798788 + Lx3C LINE L1 6751 6974 -2 3 1010 23 68 0 0 chr5 55739014 55739058 -96798201 + AT_rich Low_complexity Low_complexity 1 44 0 3 1010 225 0 0 0 chr5 55739063 55739088 -96798171 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1010 491 0 17 0 chr5 55739089 55739148 -96798111 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 1010 493 330 112 44 chr5 55739148 55739468 -96797791 + MLT1B LTR MaLR 31 372 -18 3 1010 351 289 34 87 chr5 55740177 55740385 -96796874 - B3A SINE B2 0 198 2 3 1010 256 261 11 25 chr5 55740585 55740665 -96796594 + MLT1B-int LTR MaLR 1097 1156 -215 3 1010 234 324 52 43 chr5 55740798 55740914 -96796345 - MLT1A1 LTR MaLR -2 406 290 3 1010 249 346 98 12 chr5 55740999 55741163 -96796096 - MLT1A1 LTR MaLR -230 178 1 3 1010 910 348 95 96 chr5 55742029 55742529 -96794730 - MLT-int LTR MaLR -656 1079 612 3 1010 396 0 0 0 chr5 55742529 55742573 -96794686 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1010 910 348 95 96 chr5 55742573 55743143 -96794116 - MLT-int LTR MaLR -1124 611 11 3 1010 22 56 0 0 chr5 55744313 55744349 -96792910 + AT_rich Low_complexity Low_complexity 1 36 0 3 1010 2235 71 0 0 chr5 55745278 55745560 -96791699 - L1Md_F2 LINE L1 -361 6221 5940 3 1010 2746 63 0 0 chr5 55745561 55745909 -96791350 + L1_Mus1 LINE L1 6220 6567 0 3 1010 222 234 16 0 chr5 55745966 55746030 -96791229 + (TTTG)n Simple_repeat Simple_repeat 3 67 0 3 1010 21 36 0 0 chr5 55746341 55746369 -96790890 + AT_rich Low_complexity Low_complexity 1 28 0 3 1010 237 33 0 0 chr5 55746395 55746425 -96790834 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1010 261 139 0 0 chr5 55746448 55746491 -96790768 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1010 641 13 0 13 chr5 55748969 55749048 -96788211 + (TTTC)n Simple_repeat Simple_repeat 1 78 0 3 1010 1661 65 0 0 chr5 55749059 55749273 -96787986 - L1_Mus1 LINE L1 0 6567 6354 3 1010 3709 80 0 0 chr5 55749273 55749758 -96787501 + L1_Mus1 LINE L1 5868 6352 -215 3 1010 666 37 0 0 chr5 55749758 55749839 -96787420 + (TC)n Simple_repeat Simple_repeat 1 81 0 3 1010 21 36 0 0 chr5 55749859 55749887 -96787372 + AT_rich Low_complexity Low_complexity 1 28 0 3 1010 421 305 0 37 chr5 55750113 55750222 -96787037 + MTEa LTR MaLR 1 105 -274 3 1010 333 0 0 0 chr5 55750666 55750703 -96786556 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1010 397 275 67 92 chr5 55750757 55750921 -96786338 - RSINE1 SINE B4 -1 164 5 3 1010 199 254 17 17 chr5 55751230 55751290 -96785969 - MIRm SINE MIR -138 138 79 3 1010 354 400 112 19 chr5 55754740 55755107 -96782152 - MLT1D LTR MaLR -50 455 55 3 1010 540 0 0 0 chr5 55756246 55756306 -96780953 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 1010 39 0 0 0 chr5 55756714 55756753 -96780506 + AT_rich Low_complexity Low_complexity 1 39 0 3 1010 627 123 0 0 chr5 55756953 55757075 -96780184 + (CA)n Simple_repeat Simple_repeat 1 122 0 3 1010 427 314 16 21 chr5 55757137 55757329 -96779930 + L1_Mur3 LINE L1 2390 2580 -3300 3 1010 2393 151 35 16 chr5 55757550 55757974 -96779285 + Lx LINE L1 6223 6654 0 3 1010 249 314 41 35 chr5 55758018 55758163 -96779096 + Charlie1a DNA MER1_type 1075 1220 -235 3 1010 513 235 0 9 chr5 55758259 55758375 -96778884 - B1_Mur1 SINE Alu -32 117 3 3 1010 356 293 13 79 chr5 55759572 55759724 -96777535 - B1F2 SINE Alu -6 143 2 3 1010 847 272 68 24 chr5 55759784 55760033 -96777226 - Lx5 LINE L1 -56 7404 7145 3 1010 1375 226 76 25 chr5 55760034 55760761 -96776498 - Lx5 LINE L1 -991 6705 5640 3 1010 766 130 0 0 chr5 55761047 55761162 -96776097 + L1_Mus3 LINE L1 6158 6272 -366 3 1010 349 336 142 21 chr5 55761177 55761466 -96775793 + MLT1C LTR MaLR 108 431 -36 3 1010 1069 98 0 0 chr5 55761908 55762051 -96775208 + B1_Mm SINE Alu 5 147 0 3 1010 354 378 10 5 chr5 55762440 55762637 -96774622 - Lx8 LINE L1 -181 7292 7095 3 1010 608 335 150 38 chr5 55762900 55763481 -96773778 + Lx8 LINE L1 6505 7150 -323 3 1010 262 264 161 49 chr5 55763514 55763737 -96773522 + Lx8 LINE L1 7221 7468 -5 3 1010 460 354 32 0 chr5 55764554 55764712 -96772547 + RSINE1 SINE B4 3 165 0 3 1010 22 0 0 0 chr5 55764744 55764766 -96772493 + AT_rich Low_complexity Low_complexity 1 22 0 3 1010 652 348 33 7 chr5 55764891 55765192 -96772067 - Lx6 LINE L1 -26 7434 7126 3 1010 2378 217 82 57 chr5 55765194 55765867 -96771392 + RMER6C LTR ERVK 1 690 0 3 1010 962 276 39 11 chr5 55765870 55766130 -96771129 - Lx5 LINE L1 -308 6742 6476 3 1010 1959 55 0 4 chr5 55766354 55766605 -96770654 - L1_Mus1 LINE L1 -237 6330 6108 3 1010 912 86 0 7 chr5 55766605 55766746 -96770513 + L1_Mus1 LINE L1 6427 6566 -1 3 1010 210 91 0 0 chr5 55768108 55768141 -96769118 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1010 24 85 0 0 chr5 55768512 55768571 -96768688 + AT_rich Low_complexity Low_complexity 1 59 0 3 1010 3269 172 118 18 chr5 55769224 55769894 -96767365 - Lx2B LINE L1 -5 6995 6259 3 1010 583 85 0 0 chr5 55769893 55769975 -96767284 + Lx4B LINE L1 5770 5851 -1207 3 1010 1726 209 112 19 chr5 55769970 55770332 -96766927 + Lx3C LINE L1 6504 6912 -64 3 1010 411 21 0 0 chr5 55770332 55770380 -96766879 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1010 1726 209 112 19 chr5 55770380 55770445 -96766814 + Lx3C LINE L1 6913 6971 -5 3 1010 4077 173 29 13 chr5 55770462 55771248 -96766011 - Lx2 LINE L1 -437 5440 4642 3 1010 3136 162 30 2 chr5 55771249 55771481 -96765778 + Lx2 LINE L1 5446 5677 -206 3 1010 483 48 0 0 chr5 55771481 55771543 -96765716 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 3 1010 4107 196 91 25 chr5 55771543 55772753 -96764506 + Lx2 LINE L1 5678 6994 -3 3 1010 432 51 0 0 chr5 55773110 55773169 -96764090 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 3 1010 519 17 0 0 chr5 55773174 55773234 -96764025 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1010 489 165 0 0 chr5 55773522 55773601 -96763658 + MTC LTR MaLR 1 79 -342 3 1010 446 231 39 0 chr5 55773728 55773832 -96763427 + B1_Mur2 SINE Alu 42 149 0 3 1010 1706 224 23 47 chr5 55773883 55774267 -96762992 + MTC LTR MaLR 47 421 0 3 1010 288 181 36 0 chr5 55774599 55774682 -96762577 + (TA)n Simple_repeat Simple_repeat 1 86 0 3 1010 34 42 0 0 chr5 55774729 55774777 -96762482 + AT_rich Low_complexity Low_complexity 1 48 0 3 1010 458 17 17 0 chr5 55774830 55774889 -96762370 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1010 392 313 61 0 chr5 55775105 55775236 -96762023 + B1F2 SINE Alu 10 148 -1 3 1010 1676 44 4 46 chr5 55775969 55776209 -96761050 - L1Md_F2 LINE L1 -1 6581 6352 3 1010 22 56 0 0 chr5 55776296 55776332 -96760927 + AT_rich Low_complexity Low_complexity 1 36 0 3 1010 1091 89 7 0 chr5 55776337 55776483 -96760776 + B1_Mm SINE Alu 1 147 0 3 1010 266 107 0 18 chr5 55776483 55776540 -96760719 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 3 1010 3918 140 30 5 chr5 55776813 55777360 -96759899 - Lx3B LINE L1 -283 6690 6145 3 1010 678 13 0 0 chr5 55777360 55777439 -96759820 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 3 1010 3918 140 30 5 chr5 55777439 55777524 -96759735 - Lx3B LINE L1 -829 6144 6043 3 1010 1117 105 0 7 chr5 55777524 55777678 -96759581 + Lx3B LINE L1 5602 5754 -1219 3 1010 309 26 0 0 chr5 55777844 55777882 -96759377 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1010 414 367 95 29 chr5 55779075 55779381 -96757878 - MLT1A0 LTR MaLR -11 354 29 3 1010 313 255 40 52 chr5 55779374 55779548 -96757711 - RMER17A LTR ERVK -280 471 300 3 1010 565 333 40 19 chr5 55779926 55780212 -96757047 - Lx8 LINE L1 -157 7316 7013 3 1010 842 284 17 25 chr5 55780607 55780845 -96756414 - Lx6 LINE L1 -1 7459 7224 3 1010 2050 270 92 8 chr5 55780845 55781442 -96755817 - Lx6 LINE L1 -423 7037 6391 3 1010 320 353 57 34 chr5 55782581 55782877 -96754382 - LTR29 LTR ERV1 -222 400 98 3 1010 8044 33 7 0 chr5 55783054 55784595 -96752664 - L1Md_T LINE L1 0 6582 5028 3 1010 28 79 0 0 chr5 55785084 55785147 -96752112 + AT_rich Low_complexity Low_complexity 1 63 0 3 1010 202 233 0 76 chr5 55785313 55785392 -96751867 + T-rich Low_complexity Low_complexity 4 76 0 3 1010 1991 241 63 20 chr5 55786372 55786926 -96750333 - RLTR31A_Mm LTR ERVK -4 580 3 3 1010 514 125 0 10 chr5 55788191 55788288 -96748971 - Lx LINE L1 -2 6652 6557 3 1010 4406 127 7 24 chr5 55788286 55789004 -96748255 + Lx LINE L1 5943 6648 -6 3 1010 3228 140 0 0 chr5 55789004 55789498 -96747761 + L1_Mm LINE L1 5294 5787 -96 3 1010 246 147 29 14 chr5 55790155 55790224 -96747035 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1010 477 62 0 0 chr5 55790225 55790290 -96746969 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1010 312 27 0 0 chr5 55790934 55790971 -96746288 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1010 228 327 125 0 chr5 55791087 55791191 -96746068 + ORR1D2 LTR MaLR 1 117 -253 3 1010 275 336 89 33 chr5 55791296 55791567 -96745692 + Lx8 LINE L1 7137 7422 -51 3 1010 587 297 55 0 chr5 55791752 55791934 -96745325 - B3 SINE B2 -23 193 2 3 1010 459 315 31 0 chr5 55791934 55792061 -96745198 + B1_Mur1 SINE Alu 13 143 -6 4 1010 376 81 65 0 chr5 55792407 55792469 -96744790 + Lx2 LINE L1 6931 6996 -1 4 1010 312 191 57 9 chr5 55792494 55792600 -96744659 + Lx3A LINE L1 6861 6971 -10 4 1010 201 39 0 0 chr5 55792607 55792633 -96744626 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 4 1010 198 273 14 57 chr5 55793060 55793130 -96744129 - L3 LINE CR1 -541 3948 3882 4 1010 224 320 92 10 chr5 55793144 55793242 -96744017 - L2a LINE L2 -1 3425 3320 4 1010 706 311 30 8 chr5 55794207 55794473 -96742786 + B4 SINE B4 2 273 -19 4 1010 327 321 23 86 chr5 55794532 55794706 -96742553 + B3A SINE B2 32 194 -4 4 1010 23 0 0 0 chr5 55794993 55795016 -96742243 + AT_rich Low_complexity Low_complexity 1 23 0 4 1010 419 328 0 69 chr5 55795909 55796040 -96741219 - RSINE1 SINE B4 -36 129 8 4 1010 1290 54 0 0 chr5 55797367 55797648 -96739611 + (CA)n Simple_repeat Simple_repeat 1 281 0 4 1010 912 360 96 20 chr5 55797964 55798765 -96738494 - Lx8 LINE L1 -292 7181 6320 4 1010 412 293 107 77 chr5 55799078 55799507 -96737752 - MER67C LTR ERV1 -5 509 72 4 1010 363 23 0 0 chr5 55799554 55799598 -96737661 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1010 180 0 0 0 chr5 55799711 55799731 -96737528 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1010 287 317 8 169 chr5 55799950 55800216 -96737043 - RLTR11B LTR ERVK -22 431 209 4 1010 264 59 0 0 chr5 55800221 55800255 -96737004 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1010 2072 247 106 88 chr5 55800283 55800742 -96736517 + RMER17B LTR ERVK 1 527 -431 4 1010 1080 0 0 0 chr5 55800742 55800862 -96736397 + (TTC)n Simple_repeat Simple_repeat 1 120 0 4 1010 4583 89 71 15 chr5 55800862 55801538 -96735721 - L1_Mus3 LINE L1 -17 6621 5908 4 1010 2072 251 98 98 chr5 55801538 55802014 -96735245 + RMER17B LTR ERVK 425 890 -68 4 1010 621 0 0 0 chr5 55802036 55802105 -96735154 + (TC)n Simple_repeat Simple_repeat 2 70 0 4 1010 321 118 0 0 chr5 55802105 55802155 -96735104 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1010 528 298 4 65 chr5 55802162 55802392 -96734867 - RLTR11B LTR ERVK -237 216 1 4 1010 1647 214 95 39 chr5 55802396 55802912 -96734347 - MYSERV-int LTR ERVK -6 6544 6000 4 1010 573 350 49 11 chr5 55802924 55803190 -96734069 - RMER15 LTR ERVL -25 550 275 4 1010 245 304 0 0 chr5 55803356 55803412 -96733847 - MTE-int LTR MaLR -73 1507 1452 4 1010 410 258 8 0 chr5 55803431 55803563 -96733696 + (TA)n Simple_repeat Simple_repeat 2 134 0 4 1010 434 356 42 51 chr5 55803664 55804057 -96733202 + MTD LTR MaLR 25 405 -14 4 1010 24 0 0 0 chr5 55804717 55804741 -96732518 + AT_rich Low_complexity Low_complexity 1 24 0 4 1010 2299 204 45 54 chr5 55804866 55805551 -96731708 + L1_Mur3 LINE L1 2479 3157 -2723 4 1010 2348 251 46 104 chr5 55805521 55805813 -96731446 + Lx7 LINE L1 6754 7043 -653 4 1010 1872 69 12 4 chr5 55805813 55806059 -96731200 - L1_Mus1 LINE L1 0 6567 6320 4 1010 2348 251 46 104 chr5 55806059 55806738 -96730521 + Lx7 LINE L1 7044 7669 -27 4 1010 783 269 76 149 chr5 55808987 55809977 -96727282 - RMER1C Other Other -468 874 65 4 1010 328 315 28 0 chr5 55810175 55810283 -96726976 - RMER1B Other Other -354 712 602 4 1010 398 271 39 8 chr5 55810372 55810502 -96726757 - Lx5 LINE L1 -5 7045 6912 4 1010 4727 220 52 14 chr5 55810504 55811570 -96725689 - Lx5 LINE L1 -349 6701 5596 4 1010 23 68 0 0 chr5 55811724 55811768 -96725491 + AT_rich Low_complexity Low_complexity 1 44 0 4 1010 993 210 76 50 chr5 55811794 55812095 -96725164 + Lx7 LINE L1 7388 7696 0 4 1010 25 0 0 0 chr5 55812126 55812151 -96725108 + AT_rich Low_complexity Low_complexity 1 25 0 4 1010 22 0 0 0 chr5 55812854 55812876 -96724383 + AT_rich Low_complexity Low_complexity 1 22 0 4 1010 1954 143 64 6 chr5 55813258 55813616 -96723643 + Lx2 LINE L1 6619 6997 0 4 1010 787 314 123 35 chr5 55813753 55814242 -96723017 - MT2A LTR ERVL 0 533 2 4 1010 3517 216 27 18 chr5 55814340 55815070 -96722189 + Lx5 LINE L1 6302 7038 -12 4 1010 414 0 0 0 chr5 55815070 55815116 -96722143 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 4 1010 409 333 7 7 chr5 55815488 55815636 -96721623 - Lx8 LINE L1 -818 6655 6508 4 1010 254 186 0 0 chr5 55815648 55815691 -96721568 + ORR1B2 LTR MaLR 9 51 -316 4 1010 8150 79 13 8 chr5 55815796 55817653 -96719606 - L1Md_F2 LINE L1 -12 6570 4700 4 1010 318 312 87 77 chr5 55817895 55818268 -96718991 + MLT1C LTR MaLR 2 387 -3 4 1010 1428 94 5 0 chr5 55818377 55818579 -96718680 + L1_Mus2 LINE L1 6364 6566 0 4 1010 222 37 0 0 chr5 55819133 55819160 -96718099 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1010 3034 58 7 20 chr5 55819203 55819611 -96717648 + L1Md_F3 LINE L1 6182 6584 0 4 1010 21 36 0 0 chr5 55821156 55821184 -96716075 + AT_rich Low_complexity Low_complexity 1 28 0 4 1010 441 0 0 0 chr5 55821297 55821346 -96715913 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1010 280 385 29 48 chr5 55821347 55821611 -96715648 + B4 SINE B4 53 272 -20 4 1010 226 283 0 0 chr5 55821621 55821681 -96715578 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1010 24 0 0 0 chr5 55821760 55821784 -96715475 + AT_rich Low_complexity Low_complexity 1 24 0 4 1010 24 0 0 0 chr5 55822427 55822451 -96714808 + AT_rich Low_complexity Low_complexity 1 24 0 4 1010 928 262 91 83 chr5 55822514 55822876 -96714383 - ORR1D1 LTR MaLR -3 371 7 4 1010 189 0 0 0 chr5 55823355 55823376 -96713883 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1010 198 71 0 0 chr5 55823375 55823403 -96713856 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 4 1010 3470 30 0 0 chr5 55823403 55823799 -96713460 + MTA_Mm LTR MaLR 1 396 0 4 1010 324 127 0 0 chr5 55823803 55823858 -96713401 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1010 357 326 14 0 chr5 55823879 55824023 -96713236 + L1MC3 LINE L1 7405 7550 -235 4 1010 189 0 0 0 chr5 55824375 55824396 -96712863 + (TA)n Simple_repeat Simple_repeat 2 22 0 4 1010 8178 48 3 2 chr5 55824676 55825695 -96711564 - L1Md_F3 LINE L1 -4 6580 5588 4 1010 572 30 0 0 chr5 55825694 55825760 -96711499 + L1Md_F3 LINE L1 5481 5546 -337 4 1010 241 241 69 0 chr5 55825787 55825845 -96711414 + L1M2 LINE L1 5730 5791 -509 4 1010 680 329 82 17 chr5 55825891 55826429 -96710830 - L1_Mur3 LINE L1 -268 5612 5040 4 1010 3099 240 76 99 chr5 55826472 55826605 -96710654 - Lx7 LINE L1 0 7696 7557 4 1010 195 42 0 0 chr5 55826605 55826629 -96710630 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1010 3099 240 76 99 chr5 55826629 55827321 -96709938 - Lx7 LINE L1 -140 7556 6887 4 1010 1064 101 0 22 chr5 55827321 55827503 -96709756 + (TTC)n Simple_repeat Simple_repeat 3 180 0 4 1010 3099 240 76 99 chr5 55827503 55827923 -96709336 - Lx7 LINE L1 -810 6886 6479 4 1010 2135 247 63 38 chr5 55827932 55828615 -96708644 + Lx7 LINE L1 5650 6349 -1347 4 1010 308 304 35 65 chr5 55828606 55828775 -96708484 - L1_Rod LINE L1 -847 5000 4837 4 1010 1604 42 0 5 chr5 55828914 55829107 -96708152 - B2_Mm1t SINE B2 0 193 2 4 1010 23 0 0 0 chr5 55830818 55830841 -96706418 + AT_rich Low_complexity Low_complexity 1 23 0 4 1010 23 54 0 0 chr5 55831029 55831066 -96706193 + AT_rich Low_complexity Low_complexity 1 37 0 4 1010 188 182 23 0 chr5 55831654 55831698 -96705561 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 4 1010 344 262 10 10 chr5 55833544 55833648 -96703611 + (TA)n Simple_repeat Simple_repeat 1 104 0 4 1010 217 200 40 0 chr5 55834064 55834139 -96703120 + (CATA)n Simple_repeat Simple_repeat 4 81 0 4 1010 180 0 0 0 chr5 55835322 55835342 -96701917 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 4 1010 210 37 0 0 chr5 55835485 55835512 -96701747 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1011 230 331 67 28 chr5 55836830 55837010 -96700249 - MER58B DNA MER1_type -18 323 137 4 1011 28 71 0 0 chr5 55838248 55838304 -96698955 + AT_rich Low_complexity Low_complexity 1 56 0 4 1011 287 169 0 0 chr5 55838674 55838733 -96698526 - Lx9 LINE L1 -154 7490 7432 4 1011 423 313 98 28 chr5 55839093 55839391 -96697868 - MTD LTR MaLR -19 400 50 4 1011 402 74 0 0 chr5 55839518 55839572 -96697687 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1011 764 271 10 0 chr5 55839596 55839799 -96697460 - Lx9 LINE L1 -210 7434 7230 4 1011 276 208 0 36 chr5 55839808 55839863 -96697396 + Lx9 LINE L1 7167 7219 -425 4 1011 9006 2 0 0 chr5 55842126 55843244 -96694015 - L1Md_A LINE L1 0 6582 5465 4 1011 651 214 0 67 chr5 55843302 55843467 -96693792 - RMER10B LTR ERVL -46 352 199 4 1011 21 36 0 0 chr5 55845287 55845315 -96691944 + AT_rich Low_complexity Low_complexity 1 28 0 4 1011 343 38 19 19 chr5 55845359 55845413 -96691846 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1011 180 0 0 0 chr5 55845457 55845477 -96691782 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1011 846 235 210 29 chr5 55845661 55845935 -96691324 - Lx7 LINE L1 0 7696 7365 4 1011 513 0 0 0 chr5 55845935 55845992 -96691267 + (GAAA)n Simple_repeat Simple_repeat 3 59 0 4 1011 846 235 210 29 chr5 55845992 55846098 -96691161 - Lx7 LINE L1 -332 7364 7247 4 1011 296 306 27 9 chr5 55846104 55846216 -96691043 + Lx7 LINE L1 7053 7166 -530 4 1011 535 245 57 78 chr5 55846382 55846612 -96690647 - RMER13B LTR ERVK -124 784 560 4 1011 407 248 127 107 chr5 55846579 55846823 -96690436 - RMER17A2 LTR ERVK -657 249 1 4 1011 303 273 0 33 chr5 55846824 55846915 -96690344 + MTEa LTR MaLR 5 92 -287 4 1011 4046 66 2 2 chr5 55846947 55847464 -96689795 + L1_Mus1 LINE L1 6045 6561 -6 4 1011 1220 76 12 0 chr5 55847469 55847641 -96689618 + (GAAA)n Simple_repeat Simple_repeat 4 177 0 4 1011 602 349 41 62 chr5 55847771 55847994 -96689265 + MTEa LTR MaLR 94 315 -64 4 1011 1100 144 26 11 chr5 55847994 55848183 -96689076 - B2_Mm2 SINE B2 -1 194 3 4 1011 602 349 41 62 chr5 55848183 55848249 -96689010 + MTEa LTR MaLR 316 377 -2 4 1011 509 315 6 58 chr5 55849991 55850163 -96687096 - RSINE1 SINE B4 0 165 3 4 1011 489 148 50 0 chr5 55850187 55850288 -96686971 - L1_Mus3 LINE L1 0 6638 6533 4 1011 476 66 0 0 chr5 55850289 55850350 -96686909 + L1_Mus1 LINE L1 6321 6381 -186 4 1011 21 36 0 0 chr5 55850498 55850526 -96686733 + AT_rich Low_complexity Low_complexity 1 28 0 4 1011 243 250 0 0 chr5 55850623 55850695 -96686564 + A-rich Low_complexity Low_complexity 1 72 0 5 1011 4676 81 11 0 chr5 55851138 55851771 -96685488 + Lx3_Mus LINE L1 6365 7004 -5 5 1011 261 0 0 0 chr5 55852042 55852071 -96685188 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1011 223 382 0 0 chr5 55852250 55852318 -96684941 + ID4_ SINE ID 13 80 -3 5 1011 1674 190 80 10 chr5 55852628 55853016 -96684243 + RLTR9F LTR ERVK 1 415 0 5 1011 8272 134 28 7 chr5 55853164 55854756 -96682503 + Lx3B LINE L1 5344 6964 -9 5 1011 306 229 74 96 chr5 55856595 55856730 -96680529 + HAL1 LINE L1 143 274 -2233 5 1011 1129 56 14 0 chr5 55856885 55857029 -96680230 + B1_Mus1 SINE Alu 2 147 -1 5 1011 22 0 0 0 chr5 55857029 55857051 -96680208 + AT_rich Low_complexity Low_complexity 1 22 0 5 1011 1793 231 106 45 chr5 55857247 55857890 -96679369 + RMER6C LTR ERVK 9 690 0 5 1011 2634 187 57 25 chr5 55858532 55858614 -96678645 - RLTR20B1 LTR ERVK -15 548 470 5 1011 456 19 0 0 chr5 55858614 55858667 -96678592 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1011 2634 187 57 25 chr5 55858667 55859115 -96678144 - RLTR20B1 LTR ERVK -94 469 3 5 1011 409 298 33 70 chr5 55859128 55859324 -96677935 + MTE2a LTR MaLR 57 290 -129 5 1011 25 31 0 0 chr5 55860369 55860401 -96676858 + AT_rich Low_complexity Low_complexity 1 32 0 5 1011 24 0 0 0 chr5 55860916 55860940 -96676319 + AT_rich Low_complexity Low_complexity 1 24 0 5 1011 1282 252 198 20 chr5 55861609 55861860 -96675399 - RLTR19A LTR ERVK 0 496 176 5 1011 1568 94 0 0 chr5 55861860 55862073 -96675186 - L1_Mus1 LINE L1 0 6567 6355 5 1011 1282 252 198 20 chr5 55862073 55862225 -96675034 - RLTR19A LTR ERVK -321 175 22 5 1011 931 221 157 63 chr5 55862578 55862941 -96674318 - RMER10B LTR ERVL -1 397 1 5 1011 272 257 0 14 chr5 55863305 55863376 -96673883 + CT-rich Low_complexity Low_complexity 3 72 0 5 1011 422 247 0 0 chr5 55865451 55865528 -96671731 + ID4_ SINE ID 1 77 -6 5 1011 748 53 0 0 chr5 55866676 55866770 -96670489 + B1_Mm SINE Alu 45 138 -9 5 1011 416 0 0 59 chr5 55866770 55866838 -96670421 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 5 1011 247 214 157 0 chr5 55867151 55867221 -96670038 + MLT2B1 LTR ERVL 432 512 -55 5 1011 212 222 37 0 chr5 55869348 55869402 -96667857 + (TTTG)n Simple_repeat Simple_repeat 4 59 0 5 1011 454 200 24 190 chr5 55871171 55871461 -96665798 - Lx9 LINE L1 -8 7636 7395 5 1011 216 0 0 0 chr5 55871484 55871508 -96665751 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1011 28 0 0 0 chr5 55871595 55871623 -96665636 + AT_rich Low_complexity Low_complexity 1 28 0 5 1011 252 0 0 0 chr5 55871726 55871754 -96665505 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1011 198 209 0 0 chr5 55871783 55871826 -96665433 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1011 286 7 0 3 chr5 55872057 55872104 -96665155 + L1_Mus2 LINE L1 6527 6566 0 5 1011 234 0 0 0 chr5 55872107 55872133 -96665126 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5 1011 540 73 0 0 chr5 55872204 55872286 -96664973 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 1011 2760 177 14 34 chr5 55872350 55872917 -96664342 + RLTR31_Mm LTR ERVK 3 558 -3 5 1011 23 54 0 0 chr5 55873389 55873426 -96663833 + AT_rich Low_complexity Low_complexity 1 37 0 5 1011 254 347 20 0 chr5 55873977 55874075 -96663184 + B1F SINE Alu 33 132 -17 5 1011 23 0 0 0 chr5 55874096 55874119 -96663140 + AT_rich Low_complexity Low_complexity 1 23 0 5 1011 2753 40 48 3 chr5 55876229 55876582 -96660677 - L1Md_F3 LINE L1 0 6584 6216 5 1011 1936 209 18 13 chr5 55876611 55877009 -96660250 - MTC LTR MaLR -2 419 20 5 1011 1135 164 0 0 chr5 55877992 55878193 -96659066 - Lx LINE L1 -671 5983 5783 5 1011 4870 135 62 31 chr5 55878194 55879587 -96657672 - L1Md_A LINE L1 0 6582 5141 5 1011 3159 189 25 3 chr5 55879591 55880221 -96657038 + Lx LINE L1 6011 6654 0 5 1011 26466 136 10 38 chr5 55880827 55886110 -96651149 + L1Md_F LINE L1 301 5457 -426 5 1011 8389 77 1 104 chr5 55886111 55887048 -96650211 + L1_Mus1 LINE L1 4652 5517 -366 5 1011 8267 34 5 1 chr5 55887048 55888039 -96649220 + L1Md_F3 LINE L1 5589 6583 -1 5 1011 8389 81 2 43 chr5 55888035 55889158 -96648101 + L1_Mus1 LINE L1 5447 6567 0 5 1011 26 0 0 0 chr5 55890448 55890474 -96646785 + AT_rich Low_complexity Low_complexity 1 26 0 5 1011 925 299 105 21 chr5 55891257 55891589 -96645670 - MTD LTR MaLR -14 405 46 5 1011 28 48 0 0 chr5 55891764 55891806 -96645453 + AT_rich Low_complexity Low_complexity 1 42 0 5 1011 5152 144 11 1 chr5 55891825 55892666 -96644593 + Lx2 LINE L1 6148 6996 -1 5 1011 7656 34 1 1 chr5 55892735 55893642 -96643617 - L1Md_F2 LINE L1 -14 6568 5662 5 1011 202 288 7 28 chr5 55893681 55893824 -96643435 + (TA)n Simple_repeat Simple_repeat 1 140 0 5 1011 507 85 0 0 chr5 55893857 55893939 -96643320 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 5 1011 456 19 0 0 chr5 55893949 55894002 -96643257 + (TATG)n Simple_repeat Simple_repeat 3 55 0 5 1011 793 326 89 18 chr5 55894114 55894495 -96642764 - MLT2B4 LTR ERVL -131 425 18 5 1011 803 86 77 0 chr5 55894540 55894657 -96642602 + B1_Mm SINE Alu 13 138 -9 5 1011 279 0 0 0 chr5 55894657 55894688 -96642571 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1011 880 153 73 11 chr5 55895619 55895810 -96641449 - Lx LINE L1 -1 6653 6451 5 1011 374 94 0 0 chr5 55895810 55895863 -96641396 + Lx LINE L1 6247 6299 -355 5 1011 980 231 35 193 chr5 55896865 55897321 -96639938 + ORR1C2 LTR MaLR 1 384 0 5 1011 3629 73 4 4 chr5 55898856 55899336 -96637923 + L1_Mus2 LINE L1 6086 6565 -1 5 1011 192 111 0 0 chr5 55899794 55899830 -96637429 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1011 379 294 134 35 chr5 55899882 55900083 -96637176 + MLT1A0 LTR MaLR 13 233 -132 5 1011 510 330 103 31 chr5 55900443 55900692 -96636567 - L1MC1 LINE L1 -197 6136 5870 5 1011 420 20 0 0 chr5 55900692 55900741 -96636518 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1011 510 330 103 31 chr5 55900741 55901254 -96636005 - L1MC1 LINE L1 -464 5869 5319 5 1011 458 278 70 70 chr5 55901880 55902081 -96635178 - MTEa LTR MaLR -8 371 171 5 1011 21 0 0 0 chr5 55902243 55902264 -96634995 + AT_rich Low_complexity Low_complexity 1 21 0 5 1011 8766 148 5 14 chr5 55902718 55905088 -96632171 + L1_Mus4 LINE L1 4284 6629 -7 5 1011 219 308 190 8 chr5 55905720 55905841 -96631418 + L2a LINE L2 3271 3413 -13 5 1011 279 0 0 0 chr5 55906824 55906855 -96630404 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1011 792 138 0 0 chr5 55906855 55906985 -96630274 + (TA)n Simple_repeat Simple_repeat 2 131 0 5 1011 3267 129 24 85 chr5 55907001 55907399 -96629860 + L1VL4 LINE L1 708 1098 -5559 5 1011 1117 88 0 0 chr5 55907399 55907547 -96629712 + B1_Mus1 SINE Alu 1 148 0 5 1011 13972 118 27 23 chr5 55907547 55909614 -96627645 + L1VL4 LINE L1 1099 3126 -788 5 1011 774 0 0 0 chr5 55909614 55909700 -96627559 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 5 1011 13972 179 26 22 chr5 55909700 55910413 -96626846 + L1VL4 LINE L1 3127 3885 -2258 5 1011 5246 168 7 1 chr5 55910412 55911857 -96625402 - Lx2A1 LINE L1 -692 6316 4863 5 1011 2079 153 31 77 chr5 55911857 55912311 -96624948 + Lx2A1 LINE L1 4409 4841 -1036 5 1011 684 216 0 22 chr5 55912500 55912637 -96624622 + B1_Mur4 SINE Alu 1 134 -16 5 1011 243 204 0 0 chr5 55912642 55912696 -96624563 + A-rich Low_complexity Low_complexity 1 54 0 5 1011 1847 86 3 73 chr5 55913598 55913899 -96623360 - L1Md_F2 LINE L1 -13 6569 6290 5 1011 228 214 0 0 chr5 55914036 55914092 -96623167 + (CAG)n Simple_repeat Simple_repeat 1 56 0 5 1011 21 95 0 0 chr5 55914649 55914712 -96622547 + AT_rich Low_complexity Low_complexity 1 63 0 5 1011 578 104 10 0 chr5 55915644 55915740 -96621519 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 5 1011 287 296 57 45 chr5 55916368 55916565 -96620694 + L1_Rod LINE L1 528 828 -6780 5 1011 2318 262 65 51 chr5 55916721 55918132 -96619127 + L1_Rod LINE L1 773 2220 -3627 5 1011 2802 118 7 18 chr5 55918132 55918571 -96618688 - Lx LINE L1 -4 6650 6217 5 1011 2318 254 68 55 chr5 55918571 55918773 -96618486 + L1_Rod LINE L1 2221 2410 -3437 5 1011 880 158 3 3 chr5 55918839 55919113 -96618146 + GA-rich Low_complexity Low_complexity 1 274 0 5 1011 734 254 99 54 chr5 55919209 55919692 -96617567 + L1_Rod LINE L1 2420 2924 -2923 5 1011 1430 249 136 11 chr5 55919661 55920022 -96617237 + Lx5 LINE L1 6635 7040 -10 5 1011 790 251 84 53 chr5 55920044 55920494 -96616765 + L1_Rod LINE L1 2887 3350 -2497 5 1011 1877 212 53 17 chr5 55920497 55920915 -96616344 + Lx5 LINE L1 6332 6764 -286 5 1011 1176 159 90 102 chr5 55920915 55921238 -96616021 - ORR1B1 LTR MaLR 0 394 76 5 1011 234 296 25 115 chr5 55921241 55921363 -96615896 - RLTR8 LTR ERVK 0 365 255 5 1011 244 75 47 54 chr5 55921596 55921656 -96615603 - ORR1B1 LTR MaLR -280 87 12 5 1011 1158 142 0 11 chr5 55921657 55921842 -96615417 - B2_Mm2 SINE B2 -9 186 4 5 1011 2545 252 37 82 chr5 55922528 55923346 -96613913 + Lx7 LINE L1 6916 7696 0 5 1011 594 75 0 0 chr5 55923701 55923781 -96613478 + (GA)n Simple_repeat Simple_repeat 2 81 0 5 1011 220 85 20 41 chr5 55923907 55923956 -96613303 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 5 1011 1085 212 61 77 chr5 55924634 55924946 -96612313 + RLTR20C LTR ERVK 1 307 -227 5 1011 569 214 112 22 chr5 55924957 55925006 -96612253 + RLTR20C LTR ERVK 431 479 -99 5 1011 459 0 0 0 chr5 55925006 55925057 -96612202 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1011 569 214 112 22 chr5 55925057 55925141 -96612118 + RLTR20C LTR ERVK 480 576 -2 5 1011 268 43 21 21 chr5 55925174 55925221 -96612038 + (TTTTTG)n Simple_repeat Simple_repeat 3 49 0 5 1011 228 67 0 0 chr5 55925869 55925899 -96611360 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 5 1011 23 92 0 0 chr5 55927236 55927301 -96609958 + AT_rich Low_complexity Low_complexity 1 65 0 5 1011 650 118 17 0 chr5 55927318 55927437 -96609822 + (TTTC)n Simple_repeat Simple_repeat 2 122 0 5 1011 355 273 96 32 chr5 55927469 55927594 -96609665 - RSINE1 SINE B4 -13 152 20 5 1011 229 382 191 0 chr5 55928409 55928587 -96608672 - MLT1G1 LTR MaLR -9 570 359 5 1011 450 231 196 0 chr5 55928620 55928719 -96608540 - RMER1C Other Other -4 1338 1226 5 1011 935 99 7 0 chr5 55928719 55928860 -96608399 + (GGA)n Simple_repeat Simple_repeat 3 144 0 5 1011 450 231 196 0 chr5 55928860 55928933 -96608326 - RMER1C Other Other -117 1225 1134 5 1011 243 286 161 79 chr5 55929133 55929387 -96607872 - MER57F LTR ERV1 -143 293 19 6 1011 201 132 0 0 chr5 55930776 55930814 -96606445 + (TA)n Simple_repeat Simple_repeat 2 39 0 6 1011 1120 82 0 7 chr5 55931503 55931650 -96605609 + B1_Mus1 SINE Alu 2 147 -1 6 1011 680 194 120 0 chr5 55931658 55931833 -96605426 - Lx2B LINE L1 -8 6992 6797 6 1011 239 224 43 43 chr5 55931833 55931903 -96605356 - RLTR25B LTR ERVK -508 520 451 6 1011 506 214 9 2 chr5 55931841 55932009 -96605250 - ORR1A1-int LTR MaLR -1124 668 517 6 1011 6817 144 12 7 chr5 55932001 55933128 -96604131 + ORR1A2-int LTR MaLR 831 1963 0 6 1011 2217 128 0 0 chr5 55933128 55933455 -96603804 + ORR1A2 LTR MaLR 1 327 0 6 1011 3447 163 15 20 chr5 55933455 55934665 -96602594 - L1_Mur2 LINE L1 -62 5824 4196 6 1011 198 167 0 0 chr5 55935470 55935506 -96601753 + (TA)n Simple_repeat Simple_repeat 1 36 0 6 1011 2657 86 10 23 chr5 55935955 55936346 -96600913 - L1_Mus3 LINE L1 -2 6636 6251 6 1011 998 182 52 38 chr5 55936578 55936789 -96600470 - RLTR23 LTR ERV1 0 430 217 6 1011 1129 219 54 57 chr5 55936799 55937171 -96600088 - RMER17C LTR ERVK 0 410 40 6 1011 966 89 42 48 chr5 55937159 55937324 -96599935 - RLTR23 LTR ERV1 -266 164 1 6 1011 2995 239 144 29 chr5 55937421 55938297 -96598962 + Lx7 LINE L1 6448 7424 -272 6 1011 888 141 0 17 chr5 55938347 55938527 -96598732 + CT-rich Low_complexity Low_complexity 3 179 0 6 1011 480 245 116 54 chr5 55938527 55938751 -96598508 + Lx7 LINE L1 7458 7695 -1 6 1011 25 0 0 0 chr5 55940187 55940212 -96597047 + AT_rich Low_complexity Low_complexity 1 25 0 6 1011 4200 150 44 6 chr5 55941054 55941764 -96595495 - RMER19A LTR ERVK 0 737 1 6 1011 25 0 0 0 chr5 55942164 55942189 -96595070 + AT_rich Low_complexity Low_complexity 1 25 0 6 1011 225 208 51 25 chr5 55942205 55942284 -96594975 + CT-rich Low_complexity Low_complexity 3 83 0 6 1011 450 0 0 0 chr5 55942286 55942336 -96594923 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1011 342 0 0 0 chr5 55942336 55942373 -96594886 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1011 465 324 76 30 chr5 55942486 55942750 -96594509 + Lx9 LINE L1 6450 6725 -919 6 1011 508 291 39 113 chr5 55943132 55943415 -96593844 - Lx9 LINE L1 -484 7160 6899 6 1011 2898 88 67 122 chr5 55943430 55944054 -96593205 + MTB-int LTR MaLR 549 1536 -427 6 1011 2909 94 8 0 chr5 55944056 55944451 -96592808 + MTB LTR MaLR 3 400 0 6 1011 541 312 70 60 chr5 55944475 55944676 -96592583 - B3 SINE B2 -13 203 1 6 1011 574 118 10 10 chr5 55945937 55946040 -96591219 + (GA)n Simple_repeat Simple_repeat 2 104 0 6 1011 785 122 61 0 chr5 55946479 55946625 -96590634 + RLTR31B_Mm LTR ERVK 1 155 -402 6 1011 540 110 114 55 chr5 55946625 55946856 -96590403 - IAPLTR2b LTR ERVK 0 475 216 6 1011 518 245 0 35 chr5 55946904 55946934 -96590325 + L1M1 LINE L1 5675 5700 -603 6 1011 6521 32 0 1 chr5 55946934 55947708 -96589551 - L1Md_T LINE L1 0 6582 5810 6 1011 1021 9 0 0 chr5 55947708 55947823 -96589436 + L1Md_T LINE L1 5669 5783 -100 6 1011 1453 108 31 5 chr5 55947823 55948047 -96589212 - IAPLTR2b LTR ERVK -97 230 1 6 1011 1106 236 170 16 chr5 55948055 55948425 -96588834 + RLTR31B_Mm LTR ERVK 131 557 0 6 1011 357 24 0 0 chr5 55948585 55948627 -96588632 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1011 28 61 0 0 chr5 55949862 55949911 -96587348 + AT_rich Low_complexity Low_complexity 1 49 0 6 1011 228 111 0 0 chr5 55950565 55950601 -96586658 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1011 306 106 0 0 chr5 55950671 55950718 -96586541 + (CATA)n Simple_repeat Simple_repeat 2 48 0 6 1011 252 307 11 0 chr5 55951183 55951271 -96585988 + (TG)n Simple_repeat Simple_repeat 2 90 0 6 1011 221 368 0 0 chr5 55951291 55951348 -96585911 - ID4 SINE ID -19 64 8 6 1011 189 0 0 0 chr5 55951528 55951549 -96585710 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 1011 3602 51 7 15 chr5 55952023 55952485 -96584774 - L1Md_F2 LINE L1 0 6582 6125 6 1011 21 0 0 0 chr5 55954049 55954070 -96583189 + AT_rich Low_complexity Low_complexity 1 21 0 6 1011 225 279 29 14 chr5 55954775 55954844 -96582415 - RLTR16 LTR ERVK 0 505 436 6 1011 261 200 27 67 chr5 55954823 55954898 -96582361 - RLTR16 LTR ERVK -17 488 417 6 1011 369 0 0 0 chr5 55954898 55954939 -96582320 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1011 1323 50 0 0 chr5 55954939 55955119 -96582140 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1011 1351 174 60 11 chr5 55955135 55955420 -96581839 - RLTR16 LTR ERVK -206 299 1 6 1011 579 29 0 0 chr5 55955678 55955747 -96581512 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 1011 645 262 73 106 chr5 55955800 55956127 -96581132 + RMER10A LTR ERVL 1 386 -12 6 1011 1959 268 39 55 chr5 55956830 55957450 -96579809 + L1_Mur3 LINE L1 304 913 -6815 6 1011 2336 187 50 77 chr5 55957468 55958025 -96579234 - Lx2A1 LINE L1 -134 5743 5202 6 1011 7312 142 54 3 chr5 55958018 55959231 -96578028 + Lx2A1 LINE L1 5734 7008 0 6 1011 1929 204 15 2 chr5 55959241 55959715 -96577544 + L1_Mur3 LINE L1 934 1420 -4460 6 1011 622 154 9 0 chr5 55959708 55959818 -96577441 + L1_Mur3 LINE L1 2124 2234 -3646 6 1011 1292 277 42 23 chr5 55959814 55960199 -96577060 + Lx6 LINE L1 7032 7423 -37 6 1011 4989 163 20 8 chr5 55961347 55962274 -96574985 + Lx2 LINE L1 6058 6996 -1 6 1011 2816 204 61 23 chr5 55962587 55963433 -96573826 + L1VL4 LINE L1 142 1026 -2533 6 1011 905 167 23 6 chr5 55963419 55963594 -96573665 + L1_Mur2 LINE L1 3481 3658 -2219 6 1011 5789 139 16 113 chr5 55963584 55964861 -96572398 + L1_Mm LINE L1 4154 5306 -577 6 1011 2964 29 3 0 chr5 55964861 55965206 -96572053 + ORR1A0 LTR MaLR 1 346 0 6 1011 3614 113 29 4 chr5 55965497 55966045 -96571214 + Lx3A LINE L1 6416 6977 -4 6 1011 3459 179 3 10 chr5 55966048 55966664 -96570595 + Lx LINE L1 6030 6641 -13 6 1011 39 88 0 0 chr5 55966669 55966771 -96570488 + AT_rich Low_complexity Low_complexity 1 102 0 6 1011 569 105 9 37 chr5 55966808 55966917 -96570342 - Lx LINE L1 -12 6642 6537 6 1012 2275 77 63 18 chr5 55968308 55968639 -96568620 - MTB LTR MaLR -54 346 1 6 1012 843 196 34 42 chr5 55968639 55968864 -96568395 - MTB-int LTR MaLR 0 1258 914 6 1012 22 0 0 0 chr5 55968905 55968927 -96568332 + AT_rich Low_complexity Low_complexity 1 22 0 6 1012 615 250 60 20 chr5 55968995 55969137 -96568122 - Lx6 LINE L1 0 7460 7312 6 1012 1159 73 0 0 chr5 55969137 55969288 -96567971 + L1_Mus1 LINE L1 6416 6566 -1 6 1012 615 251 66 24 chr5 55969288 55969372 -96567887 - Lx6 LINE L1 -149 7311 7254 6 1012 485 174 45 62 chr5 55969374 55969552 -96567707 + RMER17C LTR ERVK 100 274 -136 6 1012 266 0 0 29 chr5 55969552 55969587 -96567672 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 6 1012 2275 262 36 14 chr5 55969587 55970171 -96567088 - Lx6 LINE L1 -140 7320 6724 6 1012 294 148 0 0 chr5 55970326 55970380 -96566879 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1012 180 111 0 0 chr5 55970382 55970409 -96566850 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1012 618 289 0 13 chr5 55970463 55970617 -96566642 - MER5B DNA MER1_type -25 153 2 6 1012 21 36 0 0 chr5 55971620 55971648 -96565611 + AT_rich Low_complexity Low_complexity 1 28 0 6 1012 186 43 0 0 chr5 55971698 55971721 -96565538 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1012 241 208 0 0 chr5 55971724 55971772 -96565487 - L1_Mur3 LINE L1 -57 5823 5776 6 1012 7345 210 96 16 chr5 55971778 55973747 -96563512 - L1_Mur3 LINE L1 -51 5829 3705 6 1012 2877 203 94 11 chr5 55973768 55974415 -96562844 - Lx3C LINE L1 -5 6971 6271 6 1012 6283 155 25 13 chr5 55976039 55976656 -96560603 - L1_Mur2 LINE L1 -513 5364 4734 6 1012 243 0 0 0 chr5 55976656 55976683 -96560576 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1012 6283 155 25 13 chr5 55976683 55977224 -96560035 - L1_Mur2 LINE L1 -1144 4733 4192 6 1012 1615 174 16 0 chr5 55977219 55977524 -96559735 + L1_Mur2 LINE L1 3600 3909 -1968 6 1012 576 189 0 0 chr5 55977563 55977685 -96559574 - Lx3A LINE L1 -1 6980 6859 6 1012 366 80 0 0 chr5 55977740 55977790 -96559469 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1012 267 292 21 0 chr5 55977791 55977887 -96559372 - L1_Mur2 LINE L1 -2237 3643 3546 6 1012 834 162 40 6 chr5 55977901 55978075 -96559184 - Lx2A1 LINE L1 -4 7004 6825 6 1012 1706 208 74 45 chr5 55978223 55979116 -96558143 - Lx4B LINE L1 -1 6999 6197 6 1012 271 243 0 0 chr5 55980605 55980679 -96556580 + Lx9 LINE L1 7547 7620 -24 6 1012 1877 183 6 11 chr5 55981749 55982114 -96555145 - Lx LINE L1 -2 6652 6290 6 1012 2548 120 15 13 chr5 55982118 55982591 -96554668 - Lx LINE L1 -681 5973 5476 6 1012 7324 107 16 3 chr5 55982605 55983913 -96553346 - L1_Mus3 LINE L1 -7 6631 5302 6 1012 2968 29 3 0 chr5 55983913 55984258 -96553001 - ORR1A0 LTR MaLR 0 346 1 6 1012 13717 56 10 1 chr5 55984258 55986034 -96551225 - ORR1A0-int LTR MaLR 0 1792 1 6 1012 2757 27 3 0 chr5 55986038 55986375 -96550884 - ORR1A0 LTR MaLR -8 338 1 6 1012 22 35 0 0 chr5 55986438 55986467 -96550792 + AT_rich Low_complexity Low_complexity 1 29 0 6 1012 977 47 16 0 chr5 55986711 55986839 -96550420 - B1_Mm SINE Alu 0 147 18 6 1012 31485 93 7 12 chr5 55987308 55989810 -96547449 - Lx3_Mus LINE L1 -1048 5961 3484 6 1012 306 0 0 0 chr5 55989810 55989844 -96547415 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1012 31485 111 41 10 chr5 55989844 55992761 -96544498 - Lx3_Mus LINE L1 -2403 3483 212 6 1012 233 358 0 10 chr5 55992815 55992911 -96544348 - MER44D DNA MER2_type -607 98 4 6 1012 311 307 58 47 chr5 55993248 55993493 -96543766 + MLT1E3 LTR MaLR 60 283 -344 6 1012 263 49 0 24 chr5 55993655 55993697 -96543562 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1012 944 54 0 15 chr5 55994283 55994415 -96542844 + (GAA)n Simple_repeat Simple_repeat 1 130 0 6 1012 387 0 0 0 chr5 55994510 55994553 -96542706 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1012 332 344 32 19 chr5 55994563 55994717 -96542542 - B3A SINE B2 -21 177 22 6 1012 25 0 0 0 chr5 55995168 55995193 -96542066 + AT_rich Low_complexity Low_complexity 1 25 0 6 1012 1459 50 6 6 chr5 55995911 55996093 -96541166 + B2_Mm1a SINE B2 1 182 -11 6 1012 25 0 0 0 chr5 55996153 55996178 -96541081 + AT_rich Low_complexity Low_complexity 1 25 0 6 1012 1159 336 47 60 chr5 55997070 55997625 -96539634 - Lx9 LINE L1 -610 7034 6475 6 1012 6073 66 5 0 chr5 55997625 55998398 -96538861 + L1_Mus1 LINE L1 5791 6567 0 6 1012 1159 336 47 60 chr5 55998398 55998635 -96538624 - Lx9 LINE L1 -1170 6474 6253 6 1012 218 121 45 15 chr5 55998666 55998733 -96538526 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1012 5139 85 18 3 chr5 55998932 55999637 -96537622 - L1Md_F2 LINE L1 -12 6570 5855 6 1012 24 0 0 0 chr5 55999661 55999685 -96537574 + AT_rich Low_complexity Low_complexity 1 24 0 7 1012 261 0 0 0 chr5 56000943 56000972 -96536287 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1012 1975 65 10 76 chr5 56001065 56001379 -96535880 + L1_Mus2 LINE L1 6274 6566 0 2 1012 452 259 56 11 chr5 56001768 56001948 -96535311 + Lx9 LINE L1 7336 7523 -121 3 1012 21 57 0 0 chr5 56003017 56003052 -96534207 + AT_rich Low_complexity Low_complexity 1 35 0 4 1012 25 0 0 0 chr5 56003091 56003116 -96534143 + AT_rich Low_complexity Low_complexity 1 25 0 5 1012 1067 292 103 33 chr5 56003182 56003611 -96533648 - Lx8 LINE L1 -286 7187 6729 6 1012 530 244 112 11 chr5 56003617 56003795 -96533464 + ORR1D2 LTR MaLR 168 363 -7 7 1012 213 229 21 0 chr5 56003973 56004021 -96533238 - MIR SINE MIR -3 259 211 8 1012 248 203 34 0 chr5 56004115 56004174 -96533085 + MTEa LTR MaLR 317 377 -2 9 1012 309 382 62 0 chr5 56004402 56004546 -96532713 - ORR1E LTR MaLR -206 153 1 1 1012 2510 240 57 27 chr5 56004876 56005608 -96531651 + Lx2B LINE L1 6240 6993 -7 1 1012 872 92 7 0 chr5 56006744 56006885 -96530374 + (TG)n Simple_repeat Simple_repeat 2 143 0 1 1012 416 274 0 5 chr5 56007152 56007282 -96529977 + L1_Mur3 LINE L1 5449 5608 -692 1 1012 201 143 0 45 chr5 56007405 56007449 -96529810 + T-rich Low_complexity Low_complexity 4 45 0 1 1012 258 32 0 0 chr5 56008097 56008128 -96529131 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1012 7246 48 0 7 chr5 56008482 56009382 -96527877 - L1Md_F2 LINE L1 -2 6580 5687 1 1012 803 144 70 26 chr5 56011248 56011489 -96525770 + RMER6C LTR ERVK 3 287 -403 1 1012 678 54 0 0 chr5 56011490 56011583 -96525676 + L1_Mur1 LINE L1 5273 5365 -521 1 1012 644 155 47 0 chr5 56011586 56011715 -96525544 + Lx LINE L1 6515 6649 -5 1 1012 279 0 0 0 chr5 56011717 56011748 -96525511 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1012 248 340 101 57 chr5 56011753 56011912 -96525347 - Lx8 LINE L1 -839 6634 6469 2 1012 6020 131 21 1 chr5 56012526 56013682 -96523577 - Lx LINE L1 -145 6509 5331 2 1012 1882 221 38 102 chr5 56013664 56014109 -96523150 + L1_Mm LINE L1 4813 5251 -632 2 1012 1160 62 7 0 chr5 56014109 56014255 -96523004 + B1_Mus2 SINE Alu 1 147 0 2 1012 1882 221 38 102 chr5 56014255 56014388 -96522871 + L1_Mm LINE L1 5252 5354 -529 2 1012 267 136 0 0 chr5 56014396 56014455 -96522804 + (T)n Simple_repeat Simple_repeat 1 59 0 2 1012 2242 195 93 19 chr5 56014488 56015017 -96522242 + RLTR12A LTR ERVK 1 568 0 2 1012 526 272 38 0 chr5 56015023 56015181 -96522078 + Lx8 LINE L1 6695 6858 -615 2 1012 270 148 0 0 chr5 56018208 56018262 -96518997 + (A)n Simple_repeat Simple_repeat 1 54 0 2 1012 29 0 0 0 chr5 56018385 56018414 -96518845 + AT_rich Low_complexity Low_complexity 1 29 0 2 1012 287 395 66 18 chr5 56018456 56018742 -96518517 + Lx8 LINE L1 7104 7403 -70 2 1012 1103 75 7 0 chr5 56018943 56019089 -96518170 + B1_Mm SINE Alu 1 147 0 3 1012 483 100 0 0 chr5 56019096 56019166 -96518093 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 3 1012 450 318 30 44 chr5 56019416 56019615 -96517644 - MIR3 SINE MIR -65 211 15 3 1012 3444 65 65 0 chr5 56020201 56020647 -96516612 + MT2C_Mm LTR ERVL 1 475 0 3 1012 543 69 62 22 chr5 56020649 56020795 -96516464 + MTB-int LTR MaLR 1 76 -1022 3 1012 621 318 9 45 chr5 56021158 56021382 -96515877 + Lx5 LINE L1 6152 6367 -683 3 1012 1154 360 45 27 chr5 56021373 56021935 -96515324 + Lx5 LINE L1 6478 7049 -1 3 1012 204 40 0 0 chr5 56022107 56022132 -96515127 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1012 2743 84 3 25 chr5 56024656 56025048 -96512211 - L1_Mus2 LINE L1 0 6566 6184 3 1012 242 0 0 0 chr5 56025048 56025076 -96512183 + L1_Mus4 LINE L1 5840 5867 -769 3 1012 279 104 0 0 chr5 56025362 56025410 -96511849 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1012 180 77 0 0 chr5 56025423 56025449 -96511810 + (GA)n Simple_repeat Simple_repeat 2 27 0 4 1012 22 0 0 0 chr5 56025581 56025603 -96511656 + AT_rich Low_complexity Low_complexity 1 22 0 4 1012 231 36 0 0 chr5 56025604 56025632 -96511627 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1012 228 367 54 61 chr5 56026353 56026501 -96510758 + MLT1D LTR MaLR 21 167 -338 4 1012 239 250 0 0 chr5 56026616 56026664 -96510595 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 4 1012 237 356 10 0 chr5 56026676 56026777 -96510482 - Lx8 LINE L1 -139 7334 7233 4 1012 417 323 104 61 chr5 56026806 56027152 -96510107 - Lx8 LINE L1 -985 6488 6128 4 1012 21 0 0 0 chr5 56027713 56027734 -96509525 + AT_rich Low_complexity Low_complexity 1 21 0 4 1012 22 0 0 0 chr5 56028553 56028575 -96508684 + AT_rich Low_complexity Low_complexity 1 22 0 4 1012 443 339 42 58 chr5 56028732 56028914 -96508345 + MTEa LTR MaLR 1 179 -200 4 1012 570 358 65 8 chr5 56028914 56029159 -96508100 + B4A SINE B4 1 259 -33 4 1012 408 40 0 0 chr5 56029180 56029230 -96508029 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1012 218 216 20 0 chr5 56029236 56029287 -96507972 + GA-rich Low_complexity Low_complexity 1 52 0 5 1012 674 24 0 12 chr5 56029736 56029821 -96507438 + (GAAAA)n Simple_repeat Simple_repeat 2 85 0 5 1012 1132 46 0 54 chr5 56029823 56030008 -96507251 + (GGGAA)n Simple_repeat Simple_repeat 4 178 0 5 1012 210 207 32 75 chr5 56030012 56030200 -96507059 + GA-rich Low_complexity Low_complexity 1 180 0 5 1012 925 69 16 50 chr5 56030203 56030385 -96506874 + (GGAAA)n Simple_repeat Simple_repeat 5 180 0 5 1012 22 35 0 0 chr5 56032657 56032686 -96504573 + AT_rich Low_complexity Low_complexity 1 29 0 5 1012 323 316 135 10 chr5 56032719 56032911 -96504348 - MER2 DNA MER2_type -6 339 124 5 1012 969 149 0 7 chr5 56033330 56033485 -96503774 + B2_Mm2 SINE B2 11 164 -31 5 1012 381 263 76 13 chr5 56033519 56033677 -96503582 + L1MA4 LINE L1 5681 5848 -452 5 1012 578 139 0 10 chr5 56033748 56033850 -96503409 - RLTR11A2 LTR ERVK -2 525 425 6 1012 1167 189 30 17 chr5 56033846 56034083 -96503176 - RLTR11A2 LTR ERVK -287 240 1 6 1012 24 0 0 0 chr5 56034100 56034124 -96503135 + AT_rich Low_complexity Low_complexity 1 24 0 6 1012 4256 90 0 72 chr5 56034231 56034910 -96502349 - L1Md_F2 LINE L1 0 6582 5953 6 1012 2209 54 0 0 chr5 56034910 56035186 -96502073 + L1Md_F2 LINE L1 5682 5957 -625 6 1012 232 27 0 51 chr5 56035229 56035268 -96501991 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 6 1012 378 57 0 0 chr5 56035372 56035425 -96501834 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 6 1012 3587 277 68 59 chr5 56035567 56037073 -96500186 + L1_Rod LINE L1 3640 5182 -665 6 1012 3173 129 22 79 chr5 56037073 56037652 -96499607 - Lx2A LINE L1 -2 7006 6461 6 1012 3587 277 68 59 chr5 56037652 56038114 -96499145 + L1_Rod LINE L1 5183 5624 -223 6 1012 38072 55 8 4 chr5 56038129 56043963 -96493296 + L1Md_A LINE L1 104 5923 -659 6 1012 2379 134 40 42 chr5 56043963 56044439 -96492820 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1012 4333 63 66 22 chr5 56044441 56045080 -96492179 + IAPEz-int LTR ERVK 3 662 -5819 6 1012 442 66 0 32 chr5 56045080 56045143 -96492116 + IAPEz-int LTR ERVK 1359 1419 -5062 6 1012 1839 111 4 4 chr5 56045132 56045394 -96491865 + IAPEz-int LTR ERVK 2236 2497 -5183 6 1012 932 73 24 0 chr5 56045391 56045514 -96491745 + IAPEz-int LTR ERVK 4785 4910 -2770 6 1012 26375 13 2 2 chr5 56045514 56048470 -96488789 + IAPEz-int LTR ERVK 3525 6481 0 6 1012 2334 132 41 43 chr5 56048470 56048937 -96488322 + IAPLTR2_Mm LTR ERVK 1 466 -9 6 1012 5571 36 0 0 chr5 56048946 56049611 -96487648 + L1Md_T LINE L1 5918 6582 0 7 1012 852 314 99 38 chr5 56049775 56050413 -96486846 + Lx9 LINE L1 6957 7633 -11 7 1012 258 268 111 72 chr5 56050465 56050799 -96486460 + L1MA7 LINE L1 5873 6219 -72 7 1012 250 303 14 43 chr5 56051474 56051612 -96485647 + L1M2 LINE L1 3604 3737 -2403 7 1012 389 337 75 49 chr5 56051697 56052003 -96485256 + L1M2 LINE L1 3815 4128 -2015 7 1012 365 299 40 11 chr5 56052375 56052551 -96484708 + B3A SINE B2 2 182 -16 7 1012 481 234 106 28 chr5 56052577 56052718 -96484541 + Lx6 LINE L1 6472 6623 -837 7 1012 13717 54 20 22 chr5 56053177 56055478 -96481781 + L1Md_A LINE L1 606 2901 -2982 7 1012 7930 9 0 0 chr5 56055475 56056360 -96480899 - L1Md_T LINE L1 0 6582 5698 7 1012 25278 24 1 0 chr5 56056352 56059508 -96477751 + L1Md_A LINE L1 2896 6054 -528 7 1012 1052 90 11 28 chr5 56059759 56059941 -96477318 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 7 1012 22 0 0 0 chr5 56060064 56060086 -96477173 + AT_rich Low_complexity Low_complexity 1 22 0 7 1012 640 249 49 0 chr5 56060148 56060333 -96476926 - Lx7 LINE L1 -286 7410 7217 8 1012 213 329 60 12 chr5 56060456 56060539 -96476720 - L2 LINE L2 -882 2537 2451 8 1012 394 282 201 0 chr5 56060557 56060731 -96476528 - B3 SINE B2 -5 211 3 8 1012 531 0 0 0 chr5 56061036 56061095 -96476164 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 8 1012 1397 153 8 15 chr5 56061205 56061464 -96475795 + L1_Mus4 LINE L1 6380 6636 0 8 1012 22 56 0 0 chr5 56062559 56062595 -96474664 + AT_rich Low_complexity Low_complexity 1 36 0 8 1012 2389 107 14 0 chr5 56062599 56062707 -96474552 - Lx3A LINE L1 -960 6021 5914 8 1012 267 31 0 0 chr5 56062707 56062739 -96474520 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 8 1012 2389 107 14 0 chr5 56062739 56062985 -96474274 - Lx3A LINE L1 -1068 5913 5663 8 1012 5993 94 48 3 chr5 56062987 56063871 -96473388 + Lx3_Mus LINE L1 6086 7008 -1 8 1012 240 86 0 0 chr5 56063883 56063918 -96473341 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1012 23 0 0 0 chr5 56063990 56064013 -96473246 + AT_rich Low_complexity Low_complexity 1 23 0 9 1012 4855 241 32 27 chr5 56064301 56065572 -96471687 + Lx2B LINE L1 5717 6994 -6 9 1012 216 0 0 0 chr5 56065575 56065599 -96471660 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 1012 378 314 8 76 chr5 56065602 56065733 -96471526 + B4A SINE B4 171 292 0 9 1012 486 0 0 0 chr5 56065763 56065817 -96471442 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1012 357 24 0 0 chr5 56065817 56065859 -96471400 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 1012 3455 173 37 20 chr5 56066212 56066862 -96470397 - Lx2B LINE L1 0 7000 6340 9 1012 3480 124 0 4 chr5 56067641 56068168 -96469091 - L1_Mus4 LINE L1 0 6636 6112 9 1012 655 129 0 36 chr5 56068199 56068336 -96468923 - L1Md_F2 LINE L1 0 6582 6451 9 1012 1446 29 0 11 chr5 56068336 56068503 -96468756 + L1Md_F2 LINE L1 6179 6345 -237 9 1012 8809 162 53 8 chr5 56068502 56068916 -96468343 + L1_Mus3 LINE L1 4192 4610 -1273 1 1012 2596 99 47 5 chr5 56068916 56069303 -96467956 - RLTR9D LTR ERVK 0 403 1 1 1012 8809 127 60 10 chr5 56069303 56071228 -96466031 + L1_Mus3 LINE L1 4611 6638 0 1 1012 2038 90 7 0 chr5 56071241 56071529 -96465730 + L1_Mus4 LINE L1 5783 6072 -564 1 1012 9701 21 0 0 chr5 56072712 56073844 -96463415 - L1_Mm LINE L1 -881 5002 3871 1 1012 479 298 77 11 chr5 56076867 56077050 -96460209 - Lx8 LINE L1 -207 7266 7072 1 1012 912 44 0 0 chr5 56077135 56077248 -96460011 + (TATATG)n Simple_repeat Simple_repeat 2 114 0 1 1012 555 307 7 7 chr5 56077469 56077623 -96459636 - Lx8 LINE L1 -841 6632 6479 1 1012 309 316 0 25 chr5 56077984 56078065 -96459194 - MER44B DNA MER2_type -467 83 5 1 1012 1189 220 42 74 chr5 56078230 56078583 -96458676 - RMER6C LTR ERVK 0 690 349 1 1012 3899 133 55 12 chr5 56078583 56079238 -96458021 - Lx LINE L1 -2 6652 5970 1 1012 9604 123 60 26 chr5 56079238 56081503 -96455756 + L1_Mus2 LINE L1 4272 6566 0 1 1012 1516 87 0 31 chr5 56081503 56081729 -96455530 - L1_Mus4 LINE L1 -639 5997 5779 1 1012 1234 168 191 11 chr5 56081729 56082012 -96455247 - RMER6C LTR ERVK -356 334 1 1 1012 207 107 17 51 chr5 56083232 56083291 -96453968 + T-rich Low_complexity Low_complexity 2 58 0 1 1012 24 0 0 0 chr5 56083649 56083673 -96453586 + AT_rich Low_complexity Low_complexity 1 24 0 1 1012 2608 101 24 22 chr5 56084146 56084187 -96453072 - L1_Mus3 LINE L1 -7 6631 6596 1 1012 4157 116 44 42 chr5 56084187 56084934 -96452325 + RMER17A LTR ERVK 1 749 -2 1 1012 2608 101 24 22 chr5 56084934 56085309 -96451950 - L1_Mus3 LINE L1 -43 6595 6214 1 1012 543 245 0 33 chr5 56085309 56085461 -96451798 - Lx5 LINE L1 -1147 5903 5757 1 1012 269 51 26 0 chr5 56085772 56085811 -96451448 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1 1012 1005 337 14 17 chr5 56085812 56086162 -96451097 - Lx6 LINE L1 -17 7443 7095 1 1012 3004 79 7 2 chr5 56086364 56086769 -96450490 - MTB_Mm LTR MaLR 0 407 1 1 1012 747 83 0 16 chr5 56086769 56086891 -96450368 - MTB_Mm-int LTR MaLR 0 1098 979 1 1012 376 188 38 0 chr5 56086892 56086972 -96450287 - Lx9 LINE L1 -339 7305 7223 1 1012 24 32 0 0 chr5 56087172 56087203 -96450056 + AT_rich Low_complexity Low_complexity 1 31 0 1 1012 24 32 0 0 chr5 56087253 56087284 -96449975 + AT_rich Low_complexity Low_complexity 1 31 0 1 1012 21 0 0 0 chr5 56088195 56088216 -96449043 + AT_rich Low_complexity Low_complexity 1 21 0 1 1012 21 89 0 0 chr5 56088254 56088310 -96448949 + AT_rich Low_complexity Low_complexity 1 56 0 1 1012 236 320 73 59 chr5 56088950 56089086 -96448173 - LTR48 LTR ERV1 -649 138 1 1 1012 520 230 112 22 chr5 56089236 56089414 -96447845 - MER3 DNA MER1_type 0 209 16 1 1012 954 122 0 0 chr5 56089508 56089656 -96447603 + (GA)n Simple_repeat Simple_repeat 2 149 0 1 1012 1173 61 0 13 chr5 56089736 56089885 -96447374 - B1_Mus1 SINE Alu -1 147 1 1 1012 2947 46 2 124 chr5 56092647 56093098 -96444161 - MTA_Mm LTR MaLR 0 396 1 1 1012 2878 130 64 8 chr5 56093110 56093592 -96443667 + L1_Mur1 LINE L1 5378 5886 0 1 1012 221 321 19 0 chr5 56094976 56095029 -96442230 + ID4_ SINE ID 16 69 -14 1 1012 201 176 0 0 chr5 56095034 56095068 -96442191 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1 1012 25 31 0 0 chr5 56095127 56095159 -96442100 + AT_rich Low_complexity Low_complexity 1 32 0 1 1012 207 113 0 54 chr5 56095719 56095775 -96441484 + T-rich Low_complexity Low_complexity 2 54 0 1 1012 369 0 0 0 chr5 56096170 56096211 -96441048 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1012 375 41 0 0 chr5 56096211 56096259 -96441000 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1012 763 269 83 14 chr5 56096305 56096595 -96440664 - Lx9 LINE L1 -285 7359 7050 1 1012 261 172 0 0 chr5 56096682 56096746 -96440513 + A-rich Low_complexity Low_complexity 1 64 0 1 1012 183 229 0 0 chr5 56097267 56097328 -96439931 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1012 219 239 0 0 chr5 56097696 56097742 -96439517 + ID2 SINE ID 5 50 -33 1 1012 181 149 29 43 chr5 56097963 56098033 -96439226 + CT-rich Low_complexity Low_complexity 4 72 0 1 1013 306 236 223 30 chr5 56098864 56098911 -96438348 + L1MD LINE L1 3043 3094 -3052 1 1013 1100 68 7 0 chr5 56098911 56099057 -96438202 + B1_Mus2 SINE Alu 1 147 0 1 1013 306 236 223 30 chr5 56099057 56099206 -96438053 + L1MD LINE L1 3095 3276 -2870 1 1013 339 89 0 0 chr5 56099206 56099262 -96437997 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 1 1013 267 152 0 0 chr5 56099458 56099504 -96437755 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1013 8031 179 39 20 chr5 56099607 56101279 -96435980 - L1_Mm LINE L1 0 5883 4181 1 1013 21 71 0 0 chr5 56101756 56101798 -96435461 + AT_rich Low_complexity Low_complexity 1 42 0 1 1013 396 0 0 0 chr5 56102381 56102425 -96434834 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1 1013 1011 128 0 0 chr5 56102428 56102569 -96434690 - B1_Mus1 SINE Alu -6 142 2 1 1013 271 284 109 29 chr5 56102612 56102888 -96434371 + L1M2 LINE L1 4887 5184 -959 1 1013 654 116 259 0 chr5 56104433 56104545 -96432714 + B1_Mus2 SINE Alu 1 141 -6 1 1013 243 0 0 0 chr5 56104548 56104575 -96432684 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1013 23 68 0 0 chr5 56104783 56104827 -96432432 + AT_rich Low_complexity Low_complexity 1 44 0 1 1013 615 249 52 36 chr5 56104975 56105167 -96432092 + MTE2a LTR MaLR 174 368 -11 1 1013 26 0 0 0 chr5 56106078 56106104 -96431155 + AT_rich Low_complexity Low_complexity 1 26 0 1 1013 872 108 54 0 chr5 56106738 56106867 -96430392 - L1_Mus3 LINE L1 -398 6240 6105 1 1013 2248 124 56 5 chr5 56106867 56107240 -96430019 + L1_Mus3 LINE L1 6247 6638 0 1 1013 4772 145 64 0 chr5 56107510 56108324 -96428935 + L1Md_F LINE L1 274 1139 -5380 1 1013 10059 176 59 1 chr5 56110666 56112605 -96424654 + L1_Mur1 LINE L1 3529 5580 -306 1 1013 7074 89 3 9 chr5 56112616 56113649 -96423610 + L1Md_F2 LINE L1 5589 6582 0 1 1013 234 259 135 45 chr5 56114695 56114784 -96422475 - Tigger5 DNA MER2_type -126 2280 2184 1 1013 409 158 45 68 chr5 56115190 56115278 -96421981 + Lx2 LINE L1 6760 6845 -152 1 1013 25 0 0 0 chr5 56115305 56115330 -96421929 + AT_rich Low_complexity Low_complexity 1 25 0 1 1013 37675 16 1 7 chr5 56117138 56122322 -96414937 + L1Md_A LINE L1 443 5586 -297 1 1013 8707 19 0 0 chr5 56122322 56123318 -96413941 + L1Md_A LINE L1 5587 6582 0 1 1013 997 279 49 12 chr5 56123321 56123648 -96413611 + Lx7 LINE L1 6996 7334 -362 1 1013 45 19 0 0 chr5 56123685 56123737 -96413522 + AT_rich Low_complexity Low_complexity 1 52 0 1 1013 217 0 61 0 chr5 56124011 56124044 -96413215 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1013 557 356 77 45 chr5 56124344 56124747 -96412512 - MER31A LTR ERV1 -69 416 1 1 1013 1881 131 81 25 chr5 56124920 56125279 -96411980 + Lx LINE L1 6274 6652 -2 1 1013 196 348 78 28 chr5 56126289 56126431 -96410828 - L2 LINE L2 -339 3080 2932 1 1013 1389 214 105 14 chr5 56126532 56126893 -96410366 + ORR1B1 LTR MaLR 1 394 0 1 1013 32051 101 23 3 chr5 56126995 56133241 -96404018 - L1Md_F2 LINE L1 0 6582 273 1 1013 21 0 0 0 chr5 56133283 56133304 -96403955 + AT_rich Low_complexity Low_complexity 1 21 0 1 1013 624 46 37 0 chr5 56133304 56133412 -96403847 - L1Md_F3 LINE L1 -2 6582 6471 1 1013 25453 46 5 1 chr5 56133412 56136605 -96400654 - L1Md_A LINE L1 -125 5758 2554 1 1013 4930 62 0 35 chr5 56136607 56137633 -96399626 - L1Md_A LINE L1 -4273 1610 629 1 1013 351 194 30 0 chr5 56137650 56137717 -96399542 + Lx4B LINE L1 6867 6935 -123 1 1013 3898 85 0 0 chr5 56137869 56138387 -96398872 + L1_Mus1 LINE L1 6050 6567 0 1 1013 27 73 0 0 chr5 56139105 56139160 -96398099 + AT_rich Low_complexity Low_complexity 1 55 0 1 1013 222 143 0 0 chr5 56139498 56139547 -96397712 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1013 546 307 77 16 chr5 56139741 56139989 -96397270 - Lx8 LINE L1 -626 6847 6585 1 1013 30053 103 35 4 chr5 56140008 56145963 -96391296 - L1Md_F2 LINE L1 -2 6580 446 1 1013 585 282 46 50 chr5 56146092 56146331 -96390928 - Lx8 LINE L1 -1010 6463 6226 1 1013 450 0 0 0 chr5 56146740 56146790 -96390469 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1013 180 77 0 0 chr5 56146932 56146958 -96390301 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1013 1264 162 0 18 chr5 56147315 56147535 -96389724 + Lx2 LINE L1 6776 6991 -6 1 1013 197 33 0 32 chr5 56148900 56148931 -96388328 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1013 1105 89 7 0 chr5 56148973 56149119 -96388140 - B1_Mus1 SINE Alu 0 148 2 1 1013 417 20 0 0 chr5 56149184 56149234 -96388025 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1013 344 351 17 9 chr5 56149244 56149359 -96387900 - RSINE1 SINE B4 -2 163 48 1 1013 236 389 127 15 chr5 56149422 56149761 -96387498 + L2 LINE L2 840 1216 -2203 1 1013 3215 85 5 0 chr5 56150280 56150716 -96386543 - L1_Mus3 LINE L1 -6 6632 6195 1 1013 212 106 29 43 chr5 56150816 56150885 -96386374 + T-rich Low_complexity Low_complexity 2 69 0 1 1013 324 325 54 74 chr5 56151011 56151214 -96386045 + RMER5 LTR ERV1 111 309 -225 1 1013 994 147 21 29 chr5 56151331 56151531 -96385728 - LTRIS2 LTR ERV1 0 587 391 1 1013 910 234 71 20 chr5 56151967 56152163 -96385096 + ORR1D1 LTR MaLR 8 213 -161 1 1013 207 224 27 86 chr5 56152607 56152793 -96384466 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 1 1013 196 164 30 0 chr5 56152809 56152876 -96384383 + (TATAA)n Simple_repeat Simple_repeat 1 69 0 1 1013 31 26 0 0 chr5 56152916 56152954 -96384305 + AT_rich Low_complexity Low_complexity 1 38 0 1 1013 38626 38 0 0 chr5 56153424 56158834 -96378425 - L1Md_T LINE L1 -1 6581 1170 1 1013 4630 144 29 35 chr5 56158840 56159748 -96377511 - L1Md_T LINE L1 -5411 1205 304 1 1013 23 0 0 0 chr5 56159907 56159930 -96377329 + AT_rich Low_complexity Low_complexity 1 23 0 1 1013 238 80 40 0 chr5 56160260 56160310 -96376949 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 1 1013 248 304 109 33 chr5 56160562 56160773 -96376486 + MER34A1 LTR ERV1 294 520 -67 1 1013 358 329 66 20 chr5 56161689 56161841 -96375418 - B3A SINE B2 -39 159 1 2 1013 27 0 0 0 chr5 56164157 56164184 -96373075 + AT_rich Low_complexity Low_complexity 1 27 0 2 1013 750 348 77 50 chr5 56164538 56165291 -96371968 + Lx8 LINE L1 6457 7229 -244 2 1013 2800 209 175 22 chr5 56165548 56166446 -96370813 - Lx4B LINE L1 0 7058 5965 2 1013 31423 99 9 11 chr5 56168136 56173516 -96363743 + L1Md_F2 LINE L1 238 5585 -298 2 1013 7456 78 2 6 chr5 56173517 56174516 -96362743 + L1Md_F2 LINE L1 5587 6581 -1 2 1013 543 101 0 0 chr5 56175088 56175167 -96362092 + (TA)n Simple_repeat Simple_repeat 2 80 0 2 1013 21 0 0 0 chr5 56175700 56175721 -96361538 + AT_rich Low_complexity Low_complexity 1 21 0 2 1013 4119 243 59 35 chr5 56175961 56177932 -96359327 + Lx6 LINE L1 4900 7186 -274 2 1013 3002 216 157 34 chr5 56177932 56178914 -96358345 + RMER12B LTR ERVK 1 1159 -245 2 1013 576 42 0 0 chr5 56178946 56179017 -96358242 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1013 542 291 14 52 chr5 56179909 56180119 -96357140 + Lx8 LINE L1 6330 6531 -942 2 1013 570 29 0 0 chr5 56180136 56180204 -96357055 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1013 456 86 0 0 chr5 56180207 56180277 -96356982 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1013 206 337 12 0 chr5 56180278 56180361 -96356898 + GA-rich Low_complexity Low_complexity 1 84 0 2 1013 243 316 83 72 chr5 56180428 56180672 -96356587 - MIRc SINE MIR -10 252 19 2 1013 425 66 16 0 chr5 56180807 56180868 -96356391 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 2 1013 26 30 0 0 chr5 56180995 56181028 -96356231 + AT_rich Low_complexity Low_complexity 1 33 0 2 1013 4550 130 40 4 chr5 56181247 56181981 -96355278 + Lx2 LINE L1 6238 6997 0 2 1013 2700 112 22 12 chr5 56182891 56183296 -96353963 - RLTR9E LTR ERVK 0 409 1 2 1013 2280 124 144 25 chr5 56185533 56185964 -96351295 + RLTR45 LTR ERVK 1 482 0 2 1013 510 17 0 0 chr5 56186037 56186096 -96351163 + (TC)n Simple_repeat Simple_repeat 2 60 0 2 1013 192 40 0 0 chr5 56186096 56186120 -96351139 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1013 207 0 0 0 chr5 56186753 56186776 -96350483 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1013 180 0 0 0 chr5 56186776 56186796 -96350463 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1013 25 51 0 0 chr5 56188031 56188070 -96349189 + AT_rich Low_complexity Low_complexity 1 39 0 2 1013 200 119 71 0 chr5 56188514 56188556 -96348703 + T-rich Low_complexity Low_complexity 1 45 0 2 1013 22 70 0 0 chr5 56188582 56188625 -96348634 + AT_rich Low_complexity Low_complexity 1 43 0 2 1013 3233 173 59 5 chr5 56189086 56189696 -96347563 - Lx4A LINE L1 -4 7054 6412 2 1013 793 49 33 0 chr5 56189840 56189962 -96347297 - L1Md_F2 LINE L1 0 6582 6457 2 1013 3492 123 2 0 chr5 56189974 56190486 -96346773 - L1Md_F LINE L1 -5786 733 221 2 1013 38 0 0 0 chr5 56190608 56190646 -96346613 + AT_rich Low_complexity Low_complexity 1 38 0 2 1013 22 70 0 0 chr5 56192063 56192106 -96345153 + AT_rich Low_complexity Low_complexity 1 43 0 2 1013 21 0 0 0 chr5 56192189 56192210 -96345049 + AT_rich Low_complexity Low_complexity 1 21 0 2 1013 198 0 0 0 chr5 56192211 56192233 -96345026 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1013 577 250 133 9 chr5 56192234 56192444 -96344815 + Lx6 LINE L1 7198 7433 -27 2 1013 4023 131 19 61 chr5 56193289 56193636 -96343623 + RLTR13C2 LTR ERVK 1 331 -477 2 1013 6370 40 0 8 chr5 56193636 56194413 -96342846 + L1Md_T LINE L1 5812 6582 0 2 1013 4023 131 19 61 chr5 56194413 56194807 -96342452 + RLTR13C2 LTR ERVK 332 711 -97 2 1013 428 34 17 0 chr5 56194809 56194868 -96342391 + L1Md_F2 LINE L1 6438 6497 -85 2 1013 255 367 47 12 chr5 56195303 56195474 -96341785 + MER5A DNA MER1_type 12 188 -1 2 1013 21 0 0 0 chr5 56195681 56195702 -96341557 + AT_rich Low_complexity Low_complexity 1 21 0 2 1013 315 160 0 0 chr5 56196086 56196161 -96341098 + CT-rich Low_complexity Low_complexity 2 76 0 2 1013 198 103 0 0 chr5 56196366 56196395 -96340864 + (GGA)n Simple_repeat Simple_repeat 1 29 0 2 1013 206 23 93 0 chr5 56197230 56197273 -96339986 + (TTTG)n Simple_repeat Simple_repeat 4 50 0 2 1013 1036 95 0 0 chr5 56197279 56197426 -96339833 - B1_Mus2 SINE Alu 0 147 1 2 1013 29 0 0 0 chr5 56197439 56197468 -96339791 + AT_rich Low_complexity Low_complexity 1 29 0 2 1013 285 130 0 0 chr5 56197523 56197530 -96339729 + (A)n Simple_repeat Simple_repeat 1 7 0 2 1013 1162 68 0 0 chr5 56197530 56197677 -96339582 + B1_Mus2 SINE Alu 1 147 0 2 1013 285 130 0 0 chr5 56197677 56197723 -96339536 + (A)n Simple_repeat Simple_repeat 1 46 0 2 1013 409 288 76 35 chr5 56198208 56198406 -96338853 + B3 SINE B2 4 209 -7 2 1013 507 287 15 36 chr5 56198441 56198636 -96338623 - RMER1C Other Other -14 1328 1138 2 1013 1411 304 26 5 chr5 56198635 56198850 -96338409 - RMER1C Other Other -395 947 734 2 1013 198 0 0 0 chr5 56198850 56198872 -96338387 + (CTG)n Simple_repeat Simple_repeat 3 24 0 2 1013 1411 304 26 5 chr5 56198872 56199040 -96338219 - RMER1C Other Other -609 733 558 2 1013 204 97 0 0 chr5 56199380 56199411 -96337848 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 1013 227 282 58 23 chr5 56199604 56199691 -96337568 - Zaphod2 DNA Tip100 -3096 428 339 2 1013 724 251 44 9 chr5 56200040 56200254 -96337005 - MTE2b LTR MaLR -58 321 96 2 1013 263 367 59 48 chr5 56200286 56200472 -96336787 + ORR1E LTR MaLR 4 191 -168 2 1013 27 0 0 0 chr5 56200569 56200596 -96336663 + AT_rich Low_complexity Low_complexity 1 27 0 2 1013 270 0 0 0 chr5 56200636 56200666 -96336593 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1013 233 333 89 0 chr5 56201090 56201258 -96336001 - L1M4c LINE L1 -3835 2547 2365 2 1013 1295 326 99 71 chr5 56201511 56203555 -96333704 - L1M4c LINE L1 -4265 2119 19 2 1013 1147 55 7 7 chr5 56204103 56204250 -96333009 + B1_Mm SINE Alu 1 147 0 2 1013 429 20 0 0 chr5 56205862 56205912 -96331347 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 2 1013 359 206 10 30 chr5 56208755 56208855 -96328404 - Lx4B LINE L1 -49 7009 6912 2 1013 26 0 0 0 chr5 56208855 56208881 -96328378 + AT_rich Low_complexity Low_complexity 1 26 0 2 1013 452 211 7 20 chr5 56209051 56209201 -96328058 + CT-rich Low_complexity Low_complexity 3 150 0 2 1013 237 33 0 0 chr5 56209616 56209646 -96327613 + B1_Mm SINE Alu 107 136 -11 2 1013 357 24 0 0 chr5 56209646 56209688 -96327571 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 2 1013 987 160 0 0 chr5 56209688 56209863 -96327396 + GA-rich Low_complexity Low_complexity 2 176 0 2 1013 21 0 0 0 chr5 56210017 56210038 -96327221 + AT_rich Low_complexity Low_complexity 1 21 0 2 1013 833 297 95 76 chr5 56210300 56210839 -96326420 + Lx9 LINE L1 6654 7202 -442 2 1013 351 0 0 0 chr5 56210921 56210960 -96326299 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1013 311 350 58 7 chr5 56210961 56211099 -96326160 - HAL1-3A_ME LINE L1 -740 2118 1974 2 1013 224 209 0 0 chr5 56211391 56211434 -96325825 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1013 1305 73 0 0 chr5 56211434 56211640 -96325619 + (GA)n Simple_repeat Simple_repeat 1 206 0 2 1013 932 191 16 0 chr5 56212152 56212346 -96324913 - Lx2A1 LINE L1 -5 7003 6807 2 1013 1132 285 77 21 chr5 56213483 56213809 -96323450 - MTD LTR MaLR -8 411 68 2 1013 891 314 0 12 chr5 56213809 56214067 -96323192 - Lx6 LINE L1 -27 7433 7179 2 1013 477 231 45 36 chr5 56214085 56214197 -96323062 - MTD LTR MaLR -306 113 1 2 1013 832 132 83 109 chr5 56214400 56214629 -96322630 + RMER17B LTR ERVK 217 439 -519 2 1013 5673 67 1 4 chr5 56214631 56215371 -96321888 - L1Md_F2 LINE L1 0 6582 5845 2 1013 3230 45 2 5 chr5 56215371 56215771 -96321488 + L1_Mm LINE L1 5206 5604 -279 2 1013 2325 215 32 11 chr5 56215771 56216294 -96320965 + RMER17B LTR ERVK 425 958 0 2 1013 372 22 0 0 chr5 56217201 56217246 -96320013 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1013 4487 90 3 64 chr5 56218243 56218282 -96318977 + L1_Mus2 LINE L1 5918 5955 -611 2 1013 1149 62 7 0 chr5 56218282 56218428 -96318831 + B1_Mm SINE Alu 1 147 0 2 1013 4487 90 3 64 chr5 56218428 56219079 -96318180 + L1_Mus2 LINE L1 5956 6566 0 2 1013 1186 361 44 21 chr5 56219674 56220443 -96316816 - Lx8 LINE L1 -585 6888 6102 2 1013 1140 82 0 0 chr5 56221123 56221270 -96315989 - B1_Mm SINE Alu 0 147 1 2 1013 22 0 0 0 chr5 56221310 56221332 -96315927 + AT_rich Low_complexity Low_complexity 1 22 0 2 1013 510 228 92 40 chr5 56221351 56221603 -96315656 + Lx9 LINE L1 5700 5988 -1656 2 1013 764 333 60 17 chr5 56221693 56221992 -96315267 + Lx9 LINE L1 6326 6637 -1007 2 1013 244 349 29 76 chr5 56222424 56222768 -96314491 + Lx9 LINE L1 7190 7517 -127 2 1013 312 27 0 0 chr5 56222768 56222805 -96314454 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1013 1104 88 0 13 chr5 56223043 56223192 -96314067 - B1_Mm SINE Alu 0 147 1 2 1013 507 331 11 28 chr5 56225053 56225233 -96312026 - MTEb LTR MaLR 0 379 203 2 1013 216 0 0 0 chr5 56225250 56225274 -96311985 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2 1013 1650 246 84 9 chr5 56225303 56225766 -96311493 - Lx2B LINE L1 -10 6990 6493 2 1013 24 91 0 0 chr5 56226002 56226068 -96311191 + AT_rich Low_complexity Low_complexity 1 66 0 2 1013 444 19 0 0 chr5 56227251 56227304 -96309955 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1013 204 158 53 0 chr5 56227448 56227505 -96309754 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 2 1013 272 343 127 6 chr5 56227558 56227731 -96309528 - MLT2B4 LTR ERVL -362 194 1 2 1013 620 245 36 26 chr5 56228287 56228480 -96308779 + B2_Mm2 SINE B2 1 195 0 2 126 38940 60 2 23 chr5 56228524 56235445 -96301814 - L1Md_T LINE L1 0 6582 99 2 1014 234 215 69 92 chr5 56235675 56235762 -96301497 + RLTR25B LTR ERVK 425 509 -519 2 1014 736 116 0 35 chr5 56235689 56235805 -96301454 + B1_Mm SINE Alu 36 147 0 2 1014 182 105 26 0 chr5 56236539 56236577 -96300682 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1014 2105 183 63 18 chr5 56238966 56239423 -96297836 - Lx LINE L1 -1 6653 6176 2 1014 992 158 53 0 chr5 56239512 56239683 -96297576 - B2_Mm2 SINE B2 -15 180 1 3 1014 287 344 31 41 chr5 56240032 56240162 -96297097 - B4A SINE B4 -83 141 24 3 1014 377 271 49 0 chr5 56240334 56240478 -96296781 + L1MC1 LINE L1 2729 2879 -3267 3 1014 324 0 0 0 chr5 56240887 56240923 -96296336 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1014 597 219 8 0 chr5 56240939 56241058 -96296201 - B1_Mur3 SINE Alu -27 122 3 3 1014 25 51 0 0 chr5 56241147 56241186 -96296073 + AT_rich Low_complexity Low_complexity 1 39 0 3 1014 495 0 0 0 chr5 56241343 56241398 -96295861 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1014 198 0 0 0 chr5 56241398 56241419 -96295840 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1014 471 239 90 9 chr5 56241520 56241535 -96295724 + L1MC1 LINE L1 3058 3072 -3074 3 1014 747 87 0 0 chr5 56241535 56241639 -96295620 + (GAAA)n Simple_repeat Simple_repeat 3 106 0 3 1014 1333 11 29 0 chr5 56241646 56241821 -96295438 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3 1014 471 239 90 9 chr5 56241821 56242008 -96295251 + L1MC1 LINE L1 3083 3284 -2862 3 1014 23 54 0 0 chr5 56242014 56242051 -96295208 + AT_rich Low_complexity Low_complexity 1 37 0 3 1014 254 187 56 0 chr5 56242061 56242124 -96295135 + L1MC1 LINE L1 4899 4964 -1182 3 1014 295 269 83 60 chr5 56242179 56242444 -96294815 + L1MC1 LINE L1 5055 5325 -821 3 1014 323 331 26 70 chr5 56242520 56242676 -96294583 + Lx7 LINE L1 7160 7308 -388 3 1014 412 333 57 12 chr5 56242980 56243226 -96294033 + L1MC1 LINE L1 5408 5664 -669 3 1014 301 278 52 0 chr5 56243788 56243885 -96293374 + MTEb LTR MaLR 278 379 0 3 1014 1515 50 8 0 chr5 56243965 56244205 -96293054 + (TATATG)n Simple_repeat Simple_repeat 1 242 0 3 1014 318 333 8 107 chr5 56244232 56244363 -96292896 - RSINE1 SINE B4 0 165 48 3 1014 318 26 0 0 chr5 56244558 56244597 -96292662 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1014 281 281 88 35 chr5 56244640 56244810 -96292449 + L1MC1 LINE L1 6080 6258 -75 3 1014 3696 230 69 51 chr5 56245877 56246895 -96290364 - Lx5 LINE L1 -3 7047 6012 3 1014 216 130 0 0 chr5 56247657 56247703 -96289556 + (TTTTTG)n Simple_repeat Simple_repeat 1 46 0 3 1014 1014 122 0 0 chr5 56247703 56247842 -96289417 - B1_Mus2 SINE Alu -6 141 3 3 1014 23 0 0 0 chr5 56249146 56249169 -96288090 + AT_rich Low_complexity Low_complexity 1 23 0 3 1014 465 19 0 0 chr5 56250448 56250502 -96286757 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1014 280 249 18 12 chr5 56250884 56251051 -96286208 + (TA)n Simple_repeat Simple_repeat 1 168 0 3 1014 240 384 22 36 chr5 56251138 56251276 -96285983 + MTEa LTR MaLR 1 136 -243 3 1014 602 197 7 0 chr5 56252491 56252633 -96284626 + CT-rich Low_complexity Low_complexity 2 144 0 3 1014 863 70 0 0 chr5 56252635 56252750 -96284509 - B1_Mm SINE Alu 0 147 33 3 1014 21 36 0 0 chr5 56252867 56252895 -96284364 + AT_rich Low_complexity Low_complexity 1 28 0 3 1014 613 197 21 76 chr5 56252895 56253075 -96284184 - B2_Mm2 SINE B2 -25 191 2 3 1014 1061 110 7 0 chr5 56254723 56254869 -96282390 - B1_Mus2 SINE Alu 0 147 1 3 1014 187 54 54 0 chr5 56255087 56255124 -96282135 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1014 509 294 10 101 chr5 56255141 56255321 -96281938 + B3A SINE B2 1 164 -34 3 1014 1095 139 0 0 chr5 56255321 56255501 -96281758 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1014 509 294 10 101 chr5 56255501 56255528 -96281731 + B3A SINE B2 165 189 -9 3 1014 21 0 0 0 chr5 56255723 56255744 -96281515 + AT_rich Low_complexity Low_complexity 1 21 0 3 1014 1096 68 7 0 chr5 56256679 56256825 -96280434 + B1_Mus2 SINE Alu 1 147 0 3 1014 198 0 0 0 chr5 56256825 56256847 -96280412 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1014 279 0 0 0 chr5 56256945 56256976 -96280283 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 1014 27 29 0 0 chr5 56257101 56257135 -96280124 + AT_rich Low_complexity Low_complexity 1 34 0 3 1014 235 311 114 0 chr5 56257191 56257323 -96279936 + L1MB1 LINE L1 5980 6126 -42 3 1014 334 355 18 31 chr5 56257327 56257490 -96279769 + RSINE1 SINE B4 3 163 -2 3 1014 614 148 9 0 chr5 56257493 56257608 -96279651 + (CA)n Simple_repeat Simple_repeat 2 117 0 3 1014 333 151 0 19 chr5 56257609 56257663 -96279596 + HAL1-3A_ME LINE L1 1976 2028 -830 3 1014 654 25 0 0 chr5 56257676 56257756 -96279503 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 1014 776 11 11 0 chr5 56258586 56258679 -96278580 + (GA)n Simple_repeat Simple_repeat 1 94 0 3 1014 540 45 0 0 chr5 56259296 56259363 -96277896 + (TCCCC)n Simple_repeat Simple_repeat 5 71 0 3 1014 23 0 0 0 chr5 56259905 56259928 -96277331 + AT_rich Low_complexity Low_complexity 1 23 0 3 1014 627 325 107 99 chr5 56259934 56260309 -96276950 + MTEa LTR MaLR 2 379 0 3 1014 273 232 0 0 chr5 56260309 56260365 -96276894 + MTEa-int LTR MaLR 1 56 -1524 3 1014 243 300 133 0 chr5 56260541 56260631 -96276628 - PB1D7 SINE Alu 0 120 19 3 1014 300 27 0 0 chr5 56261105 56261142 -96276117 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1014 276 53 0 0 chr5 56261250 56261288 -96275971 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1014 3377 176 34 11 chr5 56261404 56262047 -96275212 - L1_Mur2 LINE L1 -201 5676 5019 3 1014 1391 151 20 0 chr5 56262051 56262303 -96274956 + L1_Mur2 LINE L1 4450 4706 -1171 3 1014 2073 105 74 6 chr5 56262307 56262672 -96274587 - RLTR10 LTR ERVK 0 390 1 3 1014 1760 155 6 9 chr5 56262676 56263001 -96274258 + L1_Mur2 LINE L1 4709 5032 -845 3 1014 354 350 50 14 chr5 56263013 56263152 -96274107 - Lx8 LINE L1 -234 7239 7096 3 1014 21 0 0 0 chr5 56263355 56263376 -96273883 + AT_rich Low_complexity Low_complexity 1 21 0 3 1014 12810 112 23 14 chr5 56264013 56264815 -96272444 + Lx3A LINE L1 3831 4645 -1241 3 1014 203 0 37 0 chr5 56264815 56264842 -96272417 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 3 1014 12810 115 39 15 chr5 56264842 56267124 -96270135 + Lx3A LINE L1 4646 6979 -2 3 1014 322 104 0 0 chr5 56267382 56267430 -96269829 - HAL1-3A_ME LINE L1 -833 2025 1978 3 1014 487 143 15 8 chr5 56267443 56267577 -96269682 + (TCTG)n Simple_repeat Simple_repeat 2 136 0 3 1014 315 0 0 0 chr5 56267579 56267614 -96269645 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1014 695 231 14 0 chr5 56269488 56269635 -96267624 + Lx6 LINE L1 6462 6610 -850 3 1014 2739 118 2 2 chr5 56269932 56270339 -96266920 - MTB_Mm LTR MaLR 0 407 1 3 1014 263 312 29 7 chr5 56270775 56270914 -96266345 + L1ME3A LINE L1 5841 5982 -191 3 1014 255 362 14 61 chr5 56273320 56273467 -96263792 - B1_Mm SINE Alu -5 142 3 3 1014 396 118 0 93 chr5 56274059 56274134 -96263125 - B1_Mus2 SINE Alu -79 68 1 3 1014 2166 279 63 2 chr5 56274161 56274731 -96262528 - Lx5 LINE L1 -5 7045 6441 3 1014 1316 300 32 30 chr5 56274731 56275192 -96262067 + Lx5 LINE L1 5967 6428 -622 3 1014 205 175 31 16 chr5 56276412 56276476 -96260783 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 3 1014 6535 165 37 55 chr5 56277727 56278748 -96258511 - Lx4A LINE L1 -4 7054 6069 3 1014 5720 127 45 20 chr5 56278748 56279683 -96257576 - RMER17B LTR ERVK 0 958 1 3 1014 6535 165 37 55 chr5 56279683 56280019 -96257240 - Lx4A LINE L1 -990 6068 5722 3 1014 1122 288 16 6 chr5 56280159 56280470 -96256789 - Lx6 LINE L1 -5 7455 7142 3 1014 402 21 0 0 chr5 56281392 56281439 -96255820 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1014 231 36 0 0 chr5 56281439 56281466 -96255793 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1014 230 286 93 19 chr5 56281545 56281652 -96255607 - MER58B DNA MER1_type -5 336 222 3 1014 425 312 176 58 chr5 56281853 56282178 -96255081 - MTE2b LTR MaLR -1 378 3 3 1014 414 0 0 0 chr5 56282498 56282544 -96254715 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1014 282 29 0 0 chr5 56282608 56282643 -96254616 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1014 1048 185 73 18 chr5 56285438 56285724 -96251535 - Lx9 LINE L1 -1 7643 7342 3 1014 1277 141 15 0 chr5 56285729 56285935 -96251324 + Lx9 LINE L1 6842 7050 -594 3 1014 186 133 0 0 chr5 56288255 56288285 -96248974 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1014 356 74 0 0 chr5 56288285 56288339 -96248920 - B1_Mur4 SINE Alu 0 150 97 3 1014 3826 108 21 9 chr5 56288331 56288903 -96248356 + MT2B2 LTR ERVL 6 584 0 3 1014 254 27 0 26 chr5 56288905 56288943 -96248316 + ORR1B1-int LTR MaLR 3 39 -1470 3 1014 213 65 0 0 chr5 56288969 56289000 -96248259 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1014 2130 111 9 9 chr5 56289044 56289372 -96247887 - L1Md_F2 LINE L1 0 6582 6255 3 1014 5404 69 0 4 chr5 56289372 56290074 -96247185 + L1_Mm LINE L1 5037 5735 -148 3 1014 2260 104 147 5 chr5 56290074 56290490 -96246769 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1014 999 100 87 17 chr5 56290491 56290664 -96246595 + IAPEz-int LTR ERVK 9 193 -6288 3 1014 245 309 0 0 chr5 56290664 56290719 -96246540 + RLTR27 LTR ERVK 221 275 -34 3 1014 3598 60 1 16 chr5 56290719 56291297 -96245962 + IAPEz-int LTR ERVK 168 662 -5819 3 1014 2252 61 0 0 chr5 56291297 56291575 -96245684 + IAPEz-int LTR ERVK 1359 1636 -4845 3 1014 5864 54 4 22 chr5 56291574 56292334 -96244925 + IAPEz-int LTR ERVK 5736 6481 0 3 1014 793 166 35 20 chr5 56292334 56292516 -96244743 + IAPLTR2_Mm LTR ERVK 1 174 -152 3 1014 4114 48 0 0 chr5 56292516 56293015 -96244244 + L1Md_F2 LINE L1 5783 6281 -301 3 1014 1827 157 10 3 chr5 56293015 56293316 -96243943 - ORR1A1 LTR MaLR -43 303 1 3 1014 279 336 95 0 chr5 56293321 56293437 -96243822 - ORR1D2 LTR MaLR -234 136 10 3 1014 320 294 133 32 chr5 56294184 56294342 -96242917 - MIRb SINE MIR -53 215 42 3 1014 504 0 0 0 chr5 56295182 56295238 -96242021 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1014 314 45 0 22 chr5 56295733 56295778 -96241481 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1014 221 298 0 0 chr5 56295890 56295947 -96241312 + CT-rich Low_complexity Low_complexity 3 59 0 3 1014 2420 195 72 22 chr5 56297595 56298188 -96239071 + RMER6C LTR ERVK 68 690 0 3 1014 335 360 119 22 chr5 56298378 56298679 -96238580 + MLT1C LTR MaLR 16 339 -128 3 1014 480 48 0 0 chr5 56298679 56298742 -96238517 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 3 1014 335 360 119 22 chr5 56298742 56298809 -96238450 + MLT1C LTR MaLR 340 420 -47 3 1014 1644 225 30 0 chr5 56300170 56300543 -96236716 + ORR1C2 LTR MaLR 1 384 0 3 1014 1671 259 7 32 chr5 56300936 56301342 -96235917 + Lx7 LINE L1 6344 6739 -957 3 1014 1367 268 16 77 chr5 56301338 56301855 -96235404 + Lx7 LINE L1 7212 7696 0 3 1014 364 320 47 8 chr5 56302159 56302288 -96234971 - L1MEd LINE L1 -5443 676 543 3 1014 381 22 0 0 chr5 56303382 56303428 -96233831 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1014 943 275 149 14 chr5 56304044 56304479 -96232780 + Lx9 LINE L1 7151 7644 0 3 1014 206 62 31 0 chr5 56304577 56304609 -96232650 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1014 2926 127 2 7 chr5 56304622 56305082 -96232177 - Lx LINE L1 -5 6649 6192 4 1014 517 332 68 25 chr5 56305877 56306158 -96231101 + Charlie1a DNA MER1_type 964 1256 -199 4 1014 764 261 84 25 chr5 56306170 56306425 -96230834 + RLTR11A2 LTR ERVK 1 292 -236 4 1014 1163 178 8 17 chr5 56306430 56306664 -96230595 + RLTRETN_Mm LTR ERVK 91 322 0 4 1014 1030 212 30 4 chr5 56306664 56306885 -96230374 + RLTR11A2 LTR ERVK 301 527 0 4 1014 1280 272 113 11 chr5 56307006 56307388 -96229871 - MTC LTR MaLR 0 421 1 4 1014 250 250 50 0 chr5 56308140 56308220 -96229039 - Lx7 LINE L1 0 7696 7613 4 1014 21 36 0 0 chr5 56308220 56308248 -96229011 + AT_rich Low_complexity Low_complexity 1 28 0 4 1014 2881 234 52 69 chr5 56308253 56309120 -96228139 - Lx7 LINE L1 -213 7483 6632 4 1014 319 208 30 67 chr5 56309242 56309376 -96227883 + CT-rich Low_complexity Low_complexity 1 129 0 4 1014 322 307 32 73 chr5 56310382 56310505 -96226754 - RLTR25B LTR ERVK -908 120 3 4 1014 2402 255 47 21 chr5 56310509 56311230 -96226029 - Lx7 LINE L1 -1044 6652 5913 4 1014 1012 145 229 25 chr5 56311756 56312026 -96225233 - Lx LINE L1 -15 6639 6315 4 1014 21 89 0 0 chr5 56312234 56312290 -96224969 + AT_rich Low_complexity Low_complexity 1 56 0 4 1014 24 0 0 0 chr5 56314387 56314411 -96222848 + AT_rich Low_complexity Low_complexity 1 24 0 4 1014 297 0 0 0 chr5 56314519 56314552 -96222707 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1014 233 305 24 24 chr5 56315257 56315341 -96221918 + B1_Mus1 SINE Alu 11 94 -54 4 1014 7016 97 36 1 chr5 56315625 56316682 -96220577 - L1_Mus3 LINE L1 -8 6630 5539 4 1014 345 299 17 28 chr5 56317366 56317545 -96219714 + (CA)n Simple_repeat Simple_repeat 2 178 0 4 1014 1066 307 102 13 chr5 56318002 56318464 -96218795 - Lx6 LINE L1 -1195 6265 5763 4 1014 1249 57 0 6 chr5 56318452 56318612 -96218647 - L1_Mus1 LINE L1 -640 5927 5769 4 1014 328 40 0 20 chr5 56318609 56318660 -96218599 + L1_Mus1 LINE L1 5933 5982 -585 4 1014 6071 63 4 1 chr5 56318660 56319438 -96217821 + L1_Mus1 LINE L1 5787 6566 -1 4 1014 242 320 13 0 chr5 56319464 56319542 -96217717 + Lx6 LINE L1 6629 6707 -753 4 1014 545 184 75 29 chr5 56319569 56319597 -96217662 + L1_Mm LINE L1 3436 3472 -2671 4 1014 1284 89 0 0 chr5 56319597 56319777 -96217482 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 4 1014 984 78 25 1 chr5 56319777 56319921 -96217338 + L1_Mm LINE L1 3447 3616 -2527 4 1014 1250 306 185 12 chr5 56319919 56320514 -96216745 + Lx6 LINE L1 6741 7438 -22 4 1014 24 32 0 0 chr5 56320514 56320545 -96216714 + AT_rich Low_complexity Low_complexity 1 31 0 4 1014 377 123 0 0 chr5 56321030 56321087 -96216172 - Lx2A LINE L1 -874 6134 6078 4 1014 4741 151 16 10 chr5 56321080 56321870 -96215389 + Lx2A LINE L1 6171 6965 -43 4 1014 362 111 0 16 chr5 56321881 56321945 -96215314 + Lx2A LINE L1 6931 6993 -15 4 1014 261 0 0 0 chr5 56321945 56321974 -96215285 + (TAA)n Simple_repeat Simple_repeat 1 29 0 4 1014 21 71 0 0 chr5 56323501 56323543 -96213716 + AT_rich Low_complexity Low_complexity 1 42 0 4 1014 7748 113 70 15 chr5 56323544 56324836 -96212423 - Lx3A LINE L1 -4 6977 5643 4 1014 509 353 15 24 chr5 56324915 56325121 -96212138 - B3 SINE B2 -2 214 11 4 1014 193 0 29 59 chr5 56325214 56325248 -96212011 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 4 1014 1194 154 68 0 chr5 56325280 56325501 -96211758 + L1_Mur2 LINE L1 4829 5064 -813 4 1014 4971 240 54 21 chr5 56325546 56326805 -96210454 - Lx5 LINE L1 -23 7027 5727 4 1014 7675 61 9 2 chr5 56326806 56327880 -96209379 - L1Md_F2 LINE L1 -12 6570 5489 4 1014 2375 180 47 2 chr5 56327877 56328345 -96208914 - L1_Mur2 LINE L1 -153 5724 5236 4 1014 1428 179 39 15 chr5 56328355 56328721 -96208538 - L1_Mur2 LINE L1 -3075 2811 2446 4 1014 201 125 0 48 chr5 56328974 56329016 -96208243 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1014 263 246 0 34 chr5 56329284 56329343 -96207916 + RMER1C Other Other 1129 1185 -157 4 1014 503 244 44 54 chr5 56329390 56329594 -96207665 - RMER1C Other Other -4 1338 1137 4 1014 892 301 135 5 chr5 56329615 56329992 -96207267 - RMER1C Other Other -442 900 475 4 1014 21 0 0 0 chr5 56331282 56331303 -96205956 + AT_rich Low_complexity Low_complexity 1 21 0 4 1014 456 67 0 0 chr5 56331757 56331817 -96205442 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1014 1296 120 9 5 chr5 56332013 56332230 -96205029 - L1_Mus4 LINE L1 -6 6630 6413 4 1014 897 43 0 0 chr5 56332252 56332369 -96204890 - B1_Mus2 SINE Alu 0 147 31 4 1014 205 29 59 0 chr5 56333430 56333464 -96203795 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 4 1014 756 269 61 106 chr5 56333612 56334042 -96203217 + MT2A LTR ERVL 1 546 -55 4 1014 537 16 0 0 chr5 56334042 56334104 -96203155 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1014 423 0 0 0 chr5 56334105 56334152 -96203107 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1014 1204 264 83 50 chr5 56334152 56334659 -96202600 + RLTR20A2 LTR ERVK 8 465 -103 4 1014 369 0 0 0 chr5 56334659 56334700 -96202559 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1014 1154 271 49 120 chr5 56334700 56334762 -96202497 + RLTR20A2 LTR ERVK 466 535 -33 4 1014 226 273 13 0 chr5 56334827 56334904 -96202355 + (CA)n Simple_repeat Simple_repeat 1 78 0 4 1014 411 21 0 0 chr5 56334951 56334999 -96202260 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1014 266 236 14 14 chr5 56335530 56335603 -96201656 - L1MB1 LINE L1 -247 5921 5849 4 1014 22233 112 6 29 chr5 56335622 56339956 -96197303 + L1Md_F LINE L1 591 4437 -1449 4 1014 6198 40 1 0 chr5 56339956 56340699 -96196560 + L1Md_T LINE L1 5839 6582 0 4 1014 16990 183 6 119 chr5 56340699 56341396 -96195863 + L1Md_F LINE L1 4438 5126 -760 4 1014 3017 31 2 120 chr5 56341398 56341840 -96195419 - RLTR10 LTR ERVK 0 390 1 4 1014 8764 18 0 3 chr5 56341840 56342840 -96194419 - RLTR10-int LTR ERVK -1 1986 990 4 1014 8272 25 0 0 chr5 56342918 56343866 -96193393 - RLTR10-int LTR ERVK -999 988 41 4 1014 2302 118 68 96 chr5 56343876 56344365 -96192894 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1014 3520 67 2 2 chr5 56344365 56344831 -96192428 + L1Md_F2 LINE L1 5120 5585 -298 4 1014 7325 79 0 20 chr5 56344832 56345836 -96191423 + L1Md_F2 LINE L1 5587 6570 -12 4 1014 216 0 0 0 chr5 56345854 56345878 -96191381 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1014 1119 300 113 0 chr5 56345888 56346225 -96191034 + MTD LTR MaLR 14 388 -31 4 1014 315 0 0 0 chr5 56346486 56346521 -96190738 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1014 369 167 0 0 chr5 56346659 56346737 -96190522 + GA-rich Low_complexity Low_complexity 3 80 0 4 1014 2392 109 108 2 chr5 56346881 56347287 -96189972 - RLTR47_MM LTR ERV1 -83 449 1 4 1014 817 323 9 0 chr5 56347385 56347701 -96189558 - RLTR6-int LTR ERV1 -57 7721 7403 4 1014 7254 183 69 8 chr5 56347727 56347991 -96189268 + L1_Mur2 LINE L1 4221 4484 -1393 4 1014 3425 20 5 0 chr5 56347991 56348385 -96188874 - MTA_Mm LTR MaLR 0 396 1 4 1014 7254 183 69 8 chr5 56348385 56349664 -96187595 + L1_Mur2 LINE L1 4485 5859 -18 4 1014 825 237 65 10 chr5 56349666 56349866 -96187393 + Lx4B LINE L1 6604 6814 -244 4 1014 357 314 81 4 chr5 56351088 56351347 -96185912 + L1MA4 LINE L1 5715 5993 -307 4 1014 485 383 51 33 chr5 56351467 56351802 -96185457 + ORR1E LTR MaLR 9 349 -10 4 1014 5067 85 17 12 chr5 56353204 56353953 -96183306 - L1_Mur1 LINE L1 -881 5005 4253 4 1014 5033 105 44 6 chr5 56353936 56354752 -96182507 - L1_Mur1 LINE L1 -3539 2347 1501 4 1014 2546 133 5 2 chr5 56354752 56355150 -96182109 - BGLII LTR ERVK 0 421 23 4 1014 3429 93 63 3 chr5 56355154 56355872 -96181387 - L1_Mur1 LINE L1 -4400 1486 712 4 1014 501 219 72 14 chr5 56355841 56355980 -96181279 - L1_Mur1 LINE L1 -6630 354 208 4 1014 26 0 0 0 chr5 56357037 56357063 -96180196 + AT_rich Low_complexity Low_complexity 1 26 0 4 1014 21 36 0 0 chr5 56357321 56357349 -96179910 + AT_rich Low_complexity Low_complexity 1 28 0 4 1014 342 309 11 0 chr5 56358285 56358379 -96178880 + B2_Mm2 SINE B2 1 95 -100 4 1014 608 293 89 57 chr5 56358544 56358929 -96178330 - RLTR26 LTR ERVK -225 417 1 4 1014 243 315 16 90 chr5 56358929 56359051 -96178208 + B3 SINE B2 104 216 0 4 1014 255 79 0 0 chr5 56359130 56359168 -96178091 + (CAA)n Simple_repeat Simple_repeat 2 39 0 4 1014 25 75 0 0 chr5 56359499 56359552 -96177707 + AT_rich Low_complexity Low_complexity 1 53 0 4 1014 1907 144 3 0 chr5 56359822 56360121 -96177138 - Lx2 LINE L1 -8 6989 6690 4 1014 687 57 0 0 chr5 56360126 56360214 -96177045 + (TA)n Simple_repeat Simple_repeat 2 89 0 4 1014 789 40 0 0 chr5 56360214 56360314 -96176945 + (TG)n Simple_repeat Simple_repeat 2 102 0 4 1014 22 35 0 0 chr5 56360781 56360810 -96176449 + AT_rich Low_complexity Low_complexity 1 29 0 4 1015 1776 146 72 16 chr5 56361190 56361511 -96175748 - Lx2 LINE L1 -1 6653 6315 4 1015 11771 183 18 2 chr5 56361519 56364632 -96172627 - L1_Mus2 LINE L1 0 6566 3404 4 1015 2568 109 3 15 chr5 56365101 56365493 -96171766 + L1_Mus4 LINE L1 6244 6630 -6 4 1015 33 73 0 0 chr5 56365838 56365906 -96171353 + AT_rich Low_complexity Low_complexity 1 68 0 4 1015 859 136 13 6 chr5 56366011 56366167 -96171092 + CT-rich Low_complexity Low_complexity 1 157 0 4 1015 1119 88 0 0 chr5 56366167 56366314 -96170945 - B1_Mus1 SINE Alu -1 147 1 4 1015 789 114 0 0 chr5 56368574 56368697 -96168562 + (CA)n Simple_repeat Simple_repeat 2 124 0 4 1015 23 97 0 0 chr5 56368945 56369017 -96168242 + AT_rich Low_complexity Low_complexity 1 72 0 4 1015 8369 74 3 2 chr5 56369270 56371408 -96165851 + L1Md_F LINE L1 163 2303 -3580 4 1015 644 240 55 0 chr5 56371426 56371584 -96165675 + Lx5 LINE L1 6831 7021 -37 4 1015 316 280 65 48 chr5 56371588 56371712 -96165547 + MT2B LTR ERVL 132 257 -344 4 1015 644 87 0 0 chr5 56371642 56371734 -96165525 + B1_Mm SINE Alu 33 124 -23 4 1015 1709 45 18 13 chr5 56371734 56371961 -96165298 + L1Md_F3 LINE L1 6345 6572 -12 4 1015 1569 177 12 86 chr5 56371998 56372325 -96164934 + ORR1B1 LTR MaLR 41 343 -51 4 1015 561 68 0 0 chr5 56372330 56372404 -96164855 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 4 1015 10104 202 56 48 chr5 56372473 56375491 -96161768 - Lx4B LINE L1 -203 6855 3674 4 1015 3551 35 0 0 chr5 56375491 56375914 -96161345 + L1Md_A LINE L1 6159 6581 -1 4 1015 10104 194 50 62 chr5 56375914 56376559 -96160700 - Lx4B LINE L1 -2204 3673 3171 4 1015 2683 249 91 14 chr5 56377009 56378196 -96159063 + Lx6 LINE L1 4976 6238 -1222 4 1015 1990 271 23 58 chr5 56378221 56378785 -96158474 + Lx6 LINE L1 6912 7455 -5 4 1015 872 279 25 31 chr5 56379031 56379353 -96157906 + RLTR15 LTR ERVK 1 320 -39 4 1015 587 244 0 0 chr5 56379399 56379522 -96157737 + Lx6 LINE L1 7197 7319 -141 4 1015 375 78 0 0 chr5 56379523 56379574 -96157685 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 4 1015 2153 215 32 122 chr5 56379680 56380464 -96156795 + Lx7 LINE L1 6817 7529 -167 5 1015 1887 150 3 3 chr5 56380470 56380765 -96156494 + ORR1A1 LTR MaLR 1 295 -51 5 1015 204 322 22 0 chr5 56381709 56381799 -96155460 + (TA)n Simple_repeat Simple_repeat 2 93 0 5 1015 205 246 0 34 chr5 56381713 56381772 -96155487 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 5 1015 1991 244 154 67 chr5 56382577 56383293 -96153966 - RMER1C Other Other -11 1331 554 5 1015 3185 274 74 22 chr5 56384116 56384603 -96152656 - Lx6 LINE L1 0 7460 6973 5 1015 2094 161 12 3 chr5 56384603 56384946 -96152313 - ORR1A1 LTR MaLR 0 346 1 5 1015 3185 274 74 22 chr5 56384946 56385155 -96152104 - Lx6 LINE L1 -488 6972 6741 5 1015 189 0 0 0 chr5 56385155 56385176 -96152083 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1015 3185 274 74 22 chr5 56385176 56385517 -96151742 - Lx6 LINE L1 -720 6740 6368 5 1015 3135 241 48 53 chr5 56385526 56385944 -96151315 - Lx6 LINE L1 -1712 5984 5585 5 1015 3496 89 10 10 chr5 56385944 56386441 -96150818 - L1Md_F2 LINE L1 0 6582 6086 5 1015 3135 237 51 44 chr5 56386441 56387070 -96150189 - Lx6 LINE L1 -296 5584 4918 5 1015 1568 178 34 82 chr5 56387070 56387425 -96149834 + RMER6A LTR ERVK 1 338 -418 5 1015 1066 136 96 0 chr5 56387436 56387635 -96149624 + RMER6-int LTR ERVK 2641 2858 -319 5 1015 239 260 123 0 chr5 56387642 56387715 -96149544 + RLTR19C LTR ERVK 1 82 -424 5 1015 12735 116 14 53 chr5 56387716 56389015 -96148244 + L1_Mur1 LINE L1 3641 4904 -982 5 1015 2955 32 0 14 chr5 56389015 56389366 -96147893 + ORR1A0 LTR MaLR 1 346 0 5 1015 14218 50 1 1 chr5 56389366 56391159 -96146100 + ORR1A0-int LTR MaLR 1 1792 0 5 1015 3047 17 0 14 chr5 56391159 56391510 -96145749 + ORR1A0 LTR MaLR 1 346 0 5 1015 12735 116 14 53 chr5 56391510 56392432 -96144827 + L1_Mur1 LINE L1 4905 5773 -113 5 1015 4070 94 2 2 chr5 56392431 56392985 -96144274 + L1Md_F2 LINE L1 5929 6482 -100 5 1015 4906 142 39 7 chr5 56392985 56393837 -96143422 + Lx3A LINE L1 6097 6975 -6 5 1015 23 68 0 0 chr5 56393838 56393882 -96143377 + AT_rich Low_complexity Low_complexity 1 44 0 5 1015 201 301 67 84 chr5 56393944 56394122 -96143137 - MIR SINE MIR -55 207 33 5 1015 387 400 44 33 chr5 56394480 56394754 -96142505 - B4A SINE B4 -3 289 13 5 1015 502 15 30 0 chr5 56395474 56395541 -96141718 + (GGA)n Simple_repeat Simple_repeat 2 70 0 5 1015 334 346 37 50 chr5 56396102 56396263 -96140996 + B4 SINE B4 6 164 -128 5 1015 231 125 0 0 chr5 56396385 56396425 -96140834 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1015 25 31 0 0 chr5 56396625 56396657 -96140602 + AT_rich Low_complexity Low_complexity 1 32 0 5 1015 433 231 161 54 chr5 56397095 56397284 -96139975 + RMER6C LTR ERVK 2 257 -463 5 1015 362 167 0 0 chr5 56397606 56397666 -96139593 + Lx5 LINE L1 6504 6563 -487 5 1015 363 165 0 0 chr5 56398377 56398462 -96138797 + GA-rich Low_complexity Low_complexity 2 86 0 5 1015 1288 171 24 10 chr5 56400007 56400423 -96136836 - Lx5 LINE L1 -270 6780 6316 5 1015 304 295 147 6 chr5 56400644 56400801 -96136458 - L1MB7 LINE L1 -54 6130 5952 5 1015 256 384 42 73 chr5 56401705 56401742 -96135517 + B4A SINE B4 1 38 -254 5 1015 230 106 0 21 chr5 56401742 56401790 -96135469 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1015 256 384 42 73 chr5 56401790 56402013 -96135246 + B4A SINE B4 39 253 -39 5 1015 447 113 0 0 chr5 56402037 56402108 -96135151 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1015 252 286 0 25 chr5 56402122 56402201 -96135058 + GA-rich Low_complexity Low_complexity 3 79 0 5 1015 253 188 21 0 chr5 56402483 56402531 -96134728 - B4 SINE B4 -239 53 5 5 1015 812 122 29 0 chr5 56402556 56402695 -96134564 + L1_Mus4 LINE L1 6461 6603 -33 5 1015 282 87 0 0 chr5 56402695 56402741 -96134518 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 5 1015 390 57 0 0 chr5 56402926 56402979 -96134280 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1015 267 54 0 0 chr5 56402979 56403015 -96134244 + (CAGAGA)n Simple_repeat Simple_repeat 4 40 0 5 1015 1184 161 122 0 chr5 56403751 56404005 -96133254 - Lx9 LINE L1 -7 7637 7353 5 1015 1140 258 57 11 chr5 56404065 56404418 -96132841 - ORR1D1 LTR MaLR -1 373 5 5 1015 183 80 0 0 chr5 56404731 56404756 -96132503 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1015 677 213 8 0 chr5 56404760 56404887 -96132372 - B1_Mus2 SINE Alu -13 134 7 5 1015 993 219 154 143 chr5 56405085 56405741 -96131518 - Lx7 LINE L1 0 7696 7034 5 1015 3586 198 52 126 chr5 56405740 56406414 -96130845 + L1_Mur3 LINE L1 3550 4107 -1773 5 1015 1159 174 55 0 chr5 56406414 56406633 -96130626 - Lx2 LINE L1 0 6997 6767 5 1015 3586 198 52 126 chr5 56406633 56406813 -96130446 + L1_Mur3 LINE L1 4108 4279 -1601 5 1015 3787 159 55 0 chr5 56406813 56407499 -96129760 + Lx2 LINE L1 6274 6997 0 5 1015 3586 198 52 126 chr5 56407499 56407909 -96129350 + L1_Mur3 LINE L1 4280 4720 -1160 5 1015 1848 176 60 18 chr5 56408070 56408452 -96128807 - Lx5 LINE L1 -875 6175 5778 5 1015 900 227 57 19 chr5 56408450 56408661 -96128598 + Lx5 LINE L1 6170 6388 -662 5 1015 401 207 23 11 chr5 56409032 56409120 -96128139 + Lx5 LINE L1 6372 6460 -590 5 1015 25 0 0 0 chr5 56409123 56409148 -96128111 + AT_rich Low_complexity Low_complexity 1 25 0 5 1015 32 0 0 0 chr5 56409204 56409236 -96128023 + AT_rich Low_complexity Low_complexity 1 32 0 5 1015 2259 229 8 0 chr5 56409295 56409766 -96127493 + Lx5 LINE L1 6570 7044 -6 5 1015 516 221 29 0 chr5 56410077 56410181 -96127078 + B3 SINE B2 24 130 -86 5 1015 327 241 89 102 chr5 56410528 56410685 -96126574 - MLT1H LTR MaLR 0 549 395 5 1015 442 317 13 58 chr5 56411240 56411394 -96125865 + RSINE1 SINE B4 2 148 -17 5 1015 4169 73 9 0 chr5 56412565 56413124 -96124135 + L1Md_F3 LINE L1 6013 6576 -8 5 1015 198 0 0 0 chr5 56413128 56413150 -96124109 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1015 1187 270 81 8 chr5 56413318 56413702 -96123557 + MTD LTR MaLR 6 417 -2 5 1015 186 118 0 0 chr5 56414327 56414361 -96122898 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1015 7527 65 8 0 chr5 56414398 56415771 -96121488 - L1Md_F2 LINE L1 -6 6576 5190 5 1015 539 29 0 14 chr5 56416697 56416767 -96120492 + (TAG)n Simple_repeat Simple_repeat 1 69 0 5 1015 398 327 27 27 chr5 56417624 56417734 -96119525 + RSINE1 SINE B4 19 128 -37 5 1015 363 301 71 41 chr5 56418049 56418246 -96119013 + ORR1E LTR MaLR 3 205 -154 5 1015 273 256 32 32 chr5 56418269 56418362 -96118897 + ORR1E LTR MaLR 267 359 0 5 1015 220 216 0 0 chr5 56418726 56418763 -96118496 + PB1D10 SINE Alu 54 90 -27 5 1015 4695 87 6 3 chr5 56419174 56419819 -96117440 - L1_Mus3 LINE L1 -7 6631 5985 5 1015 360 374 93 15 chr5 56419835 56420169 -96117090 - MLT1A LTR MaLR -7 367 8 5 1015 8309 38 2 0 chr5 56420195 56421234 -96116025 - L1Md_A LINE L1 -2 6580 5540 5 1015 24 53 0 0 chr5 56421794 56421832 -96115427 + AT_rich Low_complexity Low_complexity 1 38 0 5 1015 852 173 11 55 chr5 56422883 56423066 -96114193 + RMER6C LTR ERVK 516 690 0 5 1015 688 319 47 47 chr5 56423084 56423403 -96113856 - Lx8 LINE L1 -135 7338 7020 5 1015 409 197 0 0 chr5 56423406 56423482 -96113777 - ORR1C1 LTR MaLR 0 378 303 5 1015 1616 99 0 0 chr5 56423482 56423704 -96113555 - L1_Mus4 LINE L1 -529 6107 5886 5 1015 1804 117 0 4 chr5 56423709 56423975 -96113284 + L1_Mus4 LINE L1 6359 6623 -13 5 1015 1420 226 12 48 chr5 56424009 56424339 -96112920 - ORR1C1 LTR MaLR -58 320 3 5 1015 22 0 0 0 chr5 56424757 56424779 -96112480 + AT_rich Low_complexity Low_complexity 1 22 0 5 1015 190 250 67 0 chr5 56424821 56424881 -96112378 - MIRb SINE MIR -77 191 128 5 1015 4012 65 6 6 chr5 56425242 56425771 -96111488 - L1_Mus1 LINE L1 -1 6566 6038 5 1015 1364 77 0 5 chr5 56425771 56425966 -96111293 + L1_Mus1 LINE L1 5847 6040 -526 5 1015 344 84 113 0 chr5 56426827 56426898 -96110361 - Lx LINE L1 -2 6652 6574 5 1015 936 256 28 9 chr5 56426912 56427125 -96110134 - ORR1D1 LTR MaLR 0 374 158 5 1015 251 122 20 0 chr5 56427126 56427175 -96110084 + (GGGAGA)n Simple_repeat Simple_repeat 6 55 0 5 1015 536 282 87 71 chr5 56427175 56427427 -96109832 - ORR1D1 LTR MaLR -118 256 1 5 1015 271 23 0 65 chr5 56427590 56427636 -96109623 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1015 1079 76 28 0 chr5 56427648 56427792 -96109467 - B1_Mus1 SINE Alu 0 148 1 5 1015 259 207 153 35 chr5 56427986 56428071 -96109188 - MLT1J-int LTR MaLR -1145 242 148 5 1015 623 13 13 0 chr5 56428218 56428294 -96108965 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 5 1015 1080 71 0 0 chr5 56428889 56429044 -96108215 + (TC)n Simple_repeat Simple_repeat 2 156 0 5 1015 357 24 0 0 chr5 56429619 56429661 -96107598 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1015 818 314 16 8 chr5 56430090 56430347 -96106912 + RMER15 LTR ERVL 211 469 -106 5 1015 946 70 0 27 chr5 56430442 56430588 -96106671 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 5 1015 1294 215 18 61 chr5 56430595 56430937 -96106322 - Lx7 LINE L1 -5 7691 7365 5 1015 297 0 0 0 chr5 56430939 56430972 -96106287 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1015 21 36 0 0 chr5 56430992 56431020 -96106239 + AT_rich Low_complexity Low_complexity 1 28 0 5 1015 22 0 0 0 chr5 56431047 56431069 -96106190 + AT_rich Low_complexity Low_complexity 1 22 0 5 1015 2683 245 35 26 chr5 56431069 56431790 -96105469 - Lx7 LINE L1 -329 7367 6641 5 1015 22 35 0 0 chr5 56433947 56433976 -96103283 + AT_rich Low_complexity Low_complexity 1 29 0 5 1015 216 325 12 0 chr5 56434323 56434403 -96102856 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 5 1015 483 111 0 0 chr5 56436211 56436292 -96100967 - L1_Mus3 LINE L1 -4 6634 6554 5 1015 22 35 0 0 chr5 56436620 56436649 -96100610 + AT_rich Low_complexity Low_complexity 1 29 0 5 1015 7257 131 9 8 chr5 56437172 56438325 -96098934 + Lx2 LINE L1 5843 6996 -1 5 1015 241 331 93 54 chr5 56438383 56438439 -96098820 - MER63D DNA AcHobo -740 321 266 5 1015 210 71 0 0 chr5 56438439 56438467 -96098792 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1015 241 331 93 54 chr5 56438467 56438669 -96098590 - MER63D DNA AcHobo -796 265 54 5 1015 291 54 0 0 chr5 56439013 56439050 -96098209 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1015 490 396 36 25 chr5 56439076 56439351 -96097908 + B4A SINE B4 9 286 -6 5 1015 189 0 0 0 chr5 56440259 56440280 -96096979 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1015 25 0 0 0 chr5 56440829 56440854 -96096405 + AT_rich Low_complexity Low_complexity 1 25 0 5 1015 303 28 0 0 chr5 56440885 56440921 -96096338 + (TA)n Simple_repeat Simple_repeat 2 37 0 5 1015 222 37 0 0 chr5 56440921 56440947 -96096312 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1015 27 0 0 0 chr5 56441019 56441046 -96096213 + AT_rich Low_complexity Low_complexity 1 27 0 6 1015 445 279 147 0 chr5 56441185 56441314 -96095945 - B3 SINE B2 0 216 69 6 1015 207 0 0 0 chr5 56441443 56441466 -96095793 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 6 1015 750 286 38 8 chr5 56441466 56441730 -96095529 + Lx7 LINE L1 6872 7143 -553 6 1015 16403 122 57 19 chr5 56441736 56446375 -96090884 + L1Md_F2 LINE L1 481 5579 -298 6 1015 7968 48 3 2 chr5 56446376 56447359 -96089900 + L1Md_F2 LINE L1 5587 6570 -12 6 1015 276 130 0 0 chr5 56447403 56447449 -96089810 + (TAAG)n Simple_repeat Simple_repeat 2 47 0 6 1015 231 36 0 0 chr5 56447475 56447503 -96089756 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1015 1049 274 67 123 chr5 56447503 56448082 -96089177 + Lx7 LINE L1 7138 7684 -12 6 1015 228 67 0 0 chr5 56448090 56448120 -96089139 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 6 1015 965 51 19 25 chr5 56448520 56448681 -96088578 + (TTCTC)n Simple_repeat Simple_repeat 5 164 0 6 1015 1092 57 7 0 chr5 56448682 56448822 -96088437 - B1_Mus1 SINE Alu -6 142 2 6 1015 21 0 0 0 chr5 56449196 56449217 -96088042 + AT_rich Low_complexity Low_complexity 1 21 0 6 1015 24 32 0 0 chr5 56449586 56449617 -96087642 + AT_rich Low_complexity Low_complexity 1 31 0 6 1015 442 282 0 0 chr5 56449627 56449730 -96087529 - B1F SINE Alu -9 140 38 6 1015 1231 253 90 127 chr5 56449732 56449938 -96087321 + RMER6D LTR ERVK 14 249 -471 6 1015 1274 84 11 0 chr5 56449938 56450116 -96087143 + L1_Mus2 LINE L1 6387 6566 0 6 1015 1231 253 90 127 chr5 56450116 56450643 -96086616 + RMER6D LTR ERVK 250 720 0 6 1015 412 17 0 48 chr5 56451676 56451739 -96085520 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 6 1015 264 327 47 41 chr5 56452070 56452239 -96085020 + MLT1A LTR MaLR 192 361 -13 6 1015 206 352 66 9 chr5 56452260 56452366 -96084893 - MIR SINE MIR -145 117 6 6 1015 27 62 0 0 chr5 56453001 56453049 -96084210 + AT_rich Low_complexity Low_complexity 1 48 0 6 1015 23 0 0 0 chr5 56453439 56453462 -96083797 + AT_rich Low_complexity Low_complexity 1 23 0 6 1015 229 208 0 0 chr5 56454613 56454666 -96082593 - B3 SINE B2 -6 210 158 6 1015 636 114 33 7 chr5 56454890 56455040 -96082219 + (TCTA)n Simple_repeat Simple_repeat 3 156 0 6 1015 368 299 90 45 chr5 56455685 56455818 -96081441 - B3 SINE B2 -7 209 71 6 1015 257 228 0 6 chr5 56455874 56455933 -96081326 - B3A SINE B2 -138 57 1 6 1015 344 164 30 0 chr5 56456030 56456097 -96081162 - ORR1B2 LTR MaLR -2 376 308 6 1015 954 0 0 0 chr5 56456101 56456207 -96081052 + (TTCTC)n Simple_repeat Simple_repeat 5 110 0 6 1015 663 13 0 0 chr5 56456207 56456282 -96080977 + (TTTC)n Simple_repeat Simple_repeat 3 78 0 6 1015 529 81 0 0 chr5 56456283 56456357 -96080902 - BC1_Mm scRNA scRNA -78 74 1 6 1015 7599 110 84 12 chr5 56456361 56458041 -96079218 - Lx3_Mus LINE L1 -11 6998 5215 6 1015 822 221 21 13 chr5 56458072 56458278 -96078981 - ORR1B2 LTR MaLR -166 212 13 6 1015 432 0 0 0 chr5 56458294 56458342 -96078917 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1015 601 240 53 40 chr5 56458342 56458494 -96078765 - B3A SINE B2 -44 154 1 6 1015 37033 36 13 12 chr5 56458518 56460171 -96077088 - L1Md_T LINE L1 0 6582 4911 6 1015 226 183 46 77 chr5 56460171 56460236 -96077023 + RMER20A LTR ERVK 186 248 -268 6 1015 37033 36 13 12 chr5 56460236 56464458 -96072801 - L1Md_T LINE L1 0 4910 639 6 1015 34 24 0 0 chr5 56465984 56466025 -96071234 + AT_rich Low_complexity Low_complexity 1 41 0 6 1015 3693 53 0 0 chr5 56466378 56466827 -96070432 + L1_Mus1 LINE L1 6118 6566 -1 6 1015 235 393 92 28 chr5 56467286 56467503 -96069756 - MLT1H1 LTR MaLR -32 523 293 6 1015 269 374 5 70 chr5 56467667 56467687 -96069572 - MLT2B2 LTR ERVL -14 548 531 6 1015 631 62 21 0 chr5 56467687 56467784 -96069475 + (TG)n Simple_repeat Simple_repeat 1 99 0 6 1015 269 369 40 56 chr5 56467784 56468013 -96069246 - MLT2B2 LTR ERVL -32 530 301 6 1015 345 331 0 8 chr5 56468414 56468536 -96068723 + B1F2 SINE Alu 23 143 -6 6 1015 438 318 13 19 chr5 56469353 56469507 -96067752 + MIR SINE MIR 80 232 -30 6 1015 2325 114 27 3 chr5 56470083 56470451 -96066808 - L1_Mus3 LINE L1 -6 6632 6256 6 1015 539 92 11 0 chr5 56470968 56471055 -96066204 + (TG)n Simple_repeat Simple_repeat 2 89 0 6 1015 2030 93 3 79 chr5 56472237 56472565 -96064694 + Lx3A LINE L1 6667 6969 -12 6 1015 210 37 0 0 chr5 56472565 56472592 -96064667 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6 1015 441 302 18 18 chr5 56472855 56473020 -96064239 + Lx6 LINE L1 7285 7449 -11 6 1015 1396 241 176 3 chr5 56473308 56473925 -96063334 + Lx9 LINE L1 6914 7637 -7 6 1015 21 36 0 0 chr5 56474112 56474140 -96063119 + AT_rich Low_complexity Low_complexity 1 28 0 6 1015 232 304 0 0 chr5 56474610 56474666 -96062593 - Lx8 LINE L1 -970 6503 6448 6 1015 2005 37 12 0 chr5 56474770 56475013 -96062246 - L1Md_F3 LINE L1 -316 6268 6023 6 1015 7685 160 17 57 chr5 56475105 56475677 -96061582 - Lx4A LINE L1 -1057 6001 5440 6 1015 285 39 19 38 chr5 56475677 56475730 -96061529 + (TTG)n Simple_repeat Simple_repeat 3 54 0 6 1015 7685 154 19 71 chr5 56475730 56476606 -96060653 - Lx4A LINE L1 -438 5439 4636 6 1015 201 39 0 0 chr5 56476606 56476632 -96060627 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1015 7685 154 19 71 chr5 56476632 56476871 -96060388 - Lx4A LINE L1 -1242 4635 4388 6 1015 3166 208 84 16 chr5 56476866 56477605 -96059654 + Lx4A LINE L1 6015 6803 -255 6 1015 1789 248 21 19 chr5 56477597 56478020 -96059239 + Lx4A LINE L1 6635 7058 0 6 1015 243 103 0 0 chr5 56478022 56478061 -96059198 + (GA)n Simple_repeat Simple_repeat 2 40 0 6 1015 3178 105 4 35 chr5 56478127 56478612 -96058647 + Lx3A LINE L1 6509 6978 -3 6 1015 1686 131 93 7 chr5 56478671 56478972 -96058287 + IAPEY3_LTR LTR ERVK 1 327 -5 6 1015 452 112 12 0 chr5 56479851 56479931 -96057328 - Lx2 LINE L1 0 6997 6917 6 1015 26 30 0 0 chr5 56480557 56480590 -96056669 + AT_rich Low_complexity Low_complexity 1 33 0 6 1015 213 224 14 29 chr5 56481628 56481697 -96055562 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 1015 424 104 248 0 chr5 56481705 56481803 -96055456 - L1Md_F LINE L1 -2668 1150 1026 6 1015 4311 72 0 0 chr5 56481803 56482362 -96054897 + L1_Mus1 LINE L1 6009 6567 0 6 1015 314 322 42 0 chr5 56482473 56482591 -96054668 + Lx9 LINE L1 7310 7432 -212 6 1015 1188 172 9 13 chr5 56482660 56482884 -96054375 - Lx2 LINE L1 0 6997 6775 6 1015 1161 137 0 0 chr5 56482884 56483052 -96054207 - Lx2 LINE L1 -354 6643 6476 6 1015 279 0 0 0 chr5 56483466 56483497 -96053762 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1015 369 0 0 0 chr5 56483497 56483537 -96053722 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1015 3440 71 7 26 chr5 56483546 56484008 -96053251 - L1_Mus1 LINE L1 -51 6516 6064 6 1015 463 83 0 0 chr5 56484005 56484065 -96053194 + L1_Mus4 LINE L1 5691 5750 -886 6 1015 749 224 65 23 chr5 56484065 56484280 -96052979 - Lx5 LINE L1 -976 6074 5851 6 1015 2663 257 149 9 chr5 56484301 56485090 -96052169 + Lx5 LINE L1 6114 7050 0 6 1015 332 275 24 88 chr5 56485100 56485395 -96051864 - Lx7 LINE L1 -122 7574 7299 6 1015 26 30 0 0 chr5 56485595 56485628 -96051631 + AT_rich Low_complexity Low_complexity 1 33 0 6 1015 5155 115 62 2 chr5 56486199 56486317 -96050942 - Lx LINE L1 -2 6652 6536 6 1015 240 35 0 0 chr5 56486317 56486346 -96050913 + (CCCA)n Simple_repeat Simple_repeat 1 29 0 6 1015 5155 115 62 2 chr5 56486346 56487045 -96050214 - Lx LINE L1 -119 6535 5787 6 1015 2533 147 22 0 chr5 56487045 56487459 -96049800 + Lx LINE L1 5367 5789 -94 6 1015 1153 283 98 62 chr5 56488020 56489162 -96048097 + L1_Mur3 LINE L1 2700 3882 -1998 6 1015 1063 284 70 71 chr5 56489158 56489928 -96047331 + L1_Mur3 LINE L1 4446 5214 -666 6 1015 219 239 11 32 chr5 56490187 56490282 -96046977 + GA-rich Low_complexity Low_complexity 6 98 0 6 1015 9542 104 25 18 chr5 56490499 56491804 -96045455 - L1_Mur1 LINE L1 -3141 2745 1432 6 1015 234 0 0 0 chr5 56491804 56491830 -96045429 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 126 9542 93 17 10 chr5 56491830 56492142 -96045117 - L1_Mur1 LINE L1 -4455 1431 1051 6 1016 24 32 0 0 chr5 56492160 56492191 -96045068 + AT_rich Low_complexity Low_complexity 1 31 0 6 1016 210 282 155 0 chr5 56492732 56492803 -96044456 - PB1 SINE Alu -24 103 22 6 1016 233 242 0 16 chr5 56492871 56492902 -96044357 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 6 1016 591 53 0 0 chr5 56492902 56492977 -96044282 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 1016 218 309 19 9 chr5 56492977 56493053 -96044206 + (TG)n Simple_repeat Simple_repeat 2 79 0 6 1016 247 267 171 8 chr5 56494302 56494419 -96042840 + Lx8 LINE L1 6804 6939 -534 6 1016 4452 97 53 20 chr5 56494455 56495167 -96042092 - Lx3_Mus LINE L1 -410 6599 5864 6 1016 2598 99 34 0 chr5 56495167 56495550 -96041709 + Lx3_Mus LINE L1 6614 7009 0 6 1016 254 364 22 28 chr5 56495553 56495734 -96041525 + Lx7 LINE L1 6988 7167 -529 6 1016 3091 98 9 15 chr5 56495747 56496211 -96041048 + L1_Mus3 LINE L1 6178 6638 0 6 1016 195 129 0 0 chr5 56496377 56496408 -96040851 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1016 8217 48 3 1 chr5 56496516 56497870 -96039389 - L1Md_F2 LINE L1 0 6582 5229 6 1016 193 53 25 50 chr5 56497921 56497961 -96039298 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 6 1016 23 33 0 0 chr5 56498117 56498147 -96039112 + AT_rich Low_complexity Low_complexity 1 30 0 6 1016 272 273 41 41 chr5 56498688 56498833 -96038426 - L1MC1 LINE L1 -373 5960 5816 6 1016 21 0 0 0 chr5 56498840 56498861 -96038398 + AT_rich Low_complexity Low_complexity 1 21 0 6 1016 223 183 49 16 chr5 56499214 56499275 -96037984 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 6 1016 23 0 0 0 chr5 56499617 56499640 -96037619 + AT_rich Low_complexity Low_complexity 1 23 0 6 1016 261 326 56 21 chr5 56500006 56500150 -96037109 - MLT1C LTR MaLR -314 153 5 1 1016 22 35 0 0 chr5 56500195 56500224 -96037035 + AT_rich Low_complexity Low_complexity 1 29 0 2 1016 227 321 53 192 chr5 56502229 56502437 -96034822 + LTR16A1 LTR ERVL 109 287 -169 3 1016 977 271 318 0 chr5 56502866 56503184 -96034075 + MTD LTR MaLR 1 419 0 4 1016 499 354 96 44 chr5 56503760 56504126 -96033133 - LTR52 LTR ERVL -26 395 11 5 1016 252 0 0 0 chr5 56507071 56507099 -96030160 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1016 982 40 81 0 chr5 56507099 56507223 -96030036 - B1_Mm SINE Alu -13 134 1 7 1016 1125 335 88 26 chr5 56507452 56507657 -96029602 + Lx8 LINE L1 6581 6809 -664 8 1016 366 23 0 0 chr5 56507657 56507700 -96029559 + (TA)n Simple_repeat Simple_repeat 1 43 0 9 1016 1125 335 88 26 chr5 56507700 56508266 -96028993 + Lx8 LINE L1 6810 7399 -74 8 1016 653 313 28 14 chr5 56508490 56508707 -96028552 - ID_B1 SINE B4 -4 220 1 1 1016 209 159 0 22 chr5 56509821 56509866 -96027393 + CT-rich Low_complexity Low_complexity 2 45 0 1 1016 334 253 46 0 chr5 56510042 56510129 -96027130 - MTC LTR MaLR 0 421 331 1 1016 348 194 0 53 chr5 56511102 56511178 -96026081 - RMER6C LTR ERVK 0 690 619 1 1016 576 65 0 0 chr5 56511178 56511255 -96026004 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1016 2285 178 21 25 chr5 56511255 56511859 -96025400 + RLTR25B LTR ERVK 141 786 -242 1 1016 489 182 101 0 chr5 56511852 56511951 -96025308 + RLTR25B LTR ERVK 898 1006 -22 1 1016 461 56 56 0 chr5 56511971 56512060 -96025199 + (TTTTG)n Simple_repeat Simple_repeat 2 95 0 1 1016 500 139 0 0 chr5 56512062 56512141 -96025118 - RMER6C LTR ERVK -608 82 4 1 1016 267 286 208 31 chr5 56512712 56512842 -96024417 + MTC LTR MaLR 136 288 -133 1 1016 327 186 536 0 chr5 56512939 56513079 -96024180 - B3 SINE B2 -1 215 1 1 1016 315 0 0 0 chr5 56513898 56513933 -96023326 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1016 38233 47 0 3 chr5 56514088 56520945 -96016314 - L1Md_T LINE L1 0 6585 1 2 1016 244 330 16 50 chr5 56521149 56521270 -96015989 - Lx9 LINE L1 -394 7250 7134 2 1016 397 194 0 36 chr5 56521286 56521398 -96015861 + Lx9 LINE L1 7409 7516 -128 2 1016 5644 123 23 44 chr5 56521496 56522470 -96014789 - Lx3_Mus LINE L1 -4 7005 6053 2 1016 2090 158 29 3 chr5 56522473 56522821 -96014438 - RLTR13D4 LTR ERVK -676 357 1 2 1016 297 128 0 0 chr5 56522821 56522868 -96014391 - Lx3_Mus LINE L1 -1014 5995 5949 2 1016 472 365 35 20 chr5 56522871 56523079 -96014180 - B3 SINE B2 -3 213 1 2 1016 189 301 23 114 chr5 56523531 56523707 -96013552 - L2b LINE L2 -2 3385 3226 2 1016 236 28 0 53 chr5 56523734 56523772 -96013487 + (TCTCTG)n Simple_repeat Simple_repeat 6 41 0 2 1016 218 376 50 34 chr5 56526264 56526443 -96010816 - L2b LINE L2 -237 3138 2957 2 1016 226 214 24 0 chr5 56526641 56526725 -96010534 + (TA)n Simple_repeat Simple_repeat 2 87 0 2 1016 238 0 0 75 chr5 56527347 56527387 -96009872 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 2 1016 22 56 0 0 chr5 56527450 56527486 -96009773 + AT_rich Low_complexity Low_complexity 1 36 0 3 1016 50 0 0 0 chr5 56527677 56527727 -96009532 + AT_rich Low_complexity Low_complexity 1 50 0 3 1016 423 0 0 0 chr5 56528211 56528258 -96009001 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 3 1016 10434 183 32 73 chr5 56528599 56530326 -96006933 + Lx LINE L1 3527 5226 -651 3 1016 893 65 0 16 chr5 56530326 56530452 -96006807 + (TATATG)n Simple_repeat Simple_repeat 2 125 0 3 1016 10434 150 25 22 chr5 56530452 56531922 -96005337 + Lx LINE L1 5227 6651 -3 3 1016 651 65 0 0 chr5 56532123 56532216 -96005043 + (GA)n Simple_repeat Simple_repeat 2 94 0 3 1016 753 130 0 0 chr5 56532428 56532551 -96004708 - L1_Mus1 LINE L1 0 6567 6445 3 1016 267 31 0 0 chr5 56532553 56532585 -96004674 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1016 22 0 0 0 chr5 56533582 56533604 -96003655 + AT_rich Low_complexity Low_complexity 1 22 0 3 1016 477 0 0 0 chr5 56533663 56533716 -96003543 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1016 25 83 0 0 chr5 56534255 56534315 -96002944 + AT_rich Low_complexity Low_complexity 1 60 0 4 1016 240 336 44 26 chr5 56534693 56534806 -96002453 - B1F2 SINE Alu -17 132 18 4 1016 837 341 35 58 chr5 56534916 56535452 -96001807 + Lx8 LINE L1 6699 7222 -251 4 1016 480 62 0 0 chr5 56535589 56535653 -96001606 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1016 28 29 0 0 chr5 56535746 56535781 -96001478 + AT_rich Low_complexity Low_complexity 1 35 0 4 1016 1141 317 186 11 chr5 56537889 56538543 -95998716 + Lx8 LINE L1 6517 7285 -188 4 1016 858 331 16 30 chr5 56538572 56539008 -95998251 + Lx9 LINE L1 7087 7516 -128 4 1016 390 221 15 8 chr5 56539017 56539149 -95998110 + (TA)n Simple_repeat Simple_repeat 2 134 0 4 1016 23 0 0 0 chr5 56539247 56539270 -95997989 + AT_rich Low_complexity Low_complexity 1 23 0 4 1016 271 269 0 25 chr5 56539601 56539681 -95997578 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 4 1016 400 407 19 48 chr5 56539847 56540056 -95997203 - B4A SINE B4 -77 215 13 5 1016 25 51 0 0 chr5 56540203 56540242 -95997017 + AT_rich Low_complexity Low_complexity 1 39 0 5 1016 224 366 13 53 chr5 56540296 56540371 -95996888 + ID4 SINE ID 6 77 -6 5 1016 192 40 0 0 chr5 56540414 56540439 -95996820 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1016 363 308 82 39 chr5 56540535 56540951 -95996308 - L1M5 LINE L1 -1896 4250 3817 5 1016 326 74 19 0 chr5 56542408 56542462 -95994797 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 5 1016 687 224 0 0 chr5 56543299 56543478 -95993781 + GA-rich Low_complexity Low_complexity 1 179 0 5 1016 204 287 242 18 chr5 56544124 56544254 -95993005 + MIRc SINE MIR 8 163 -45 5 1016 206 127 0 52 chr5 56544549 56544607 -95992652 + A-rich Low_complexity Low_complexity 1 55 0 5 1016 23 54 0 0 chr5 56544711 56544748 -95992511 + AT_rich Low_complexity Low_complexity 1 37 0 5 1016 347 338 13 7 chr5 56546855 56547004 -95990255 - Arthur1A DNA Tip100 -17 160 11 6 1016 224 219 0 0 chr5 56548129 56548170 -95989089 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1016 335 235 39 102 chr5 56548957 56549085 -95988174 - RLTR40 LTR ERVK -341 476 357 6 1016 327 152 0 0 chr5 56549088 56549154 -95988105 - L1_Mus3 LINE L1 -1 6637 6572 6 1016 2201 107 9 9 chr5 56549150 56549480 -95987779 + L1_Mus3 LINE L1 6305 6634 -4 6 1016 2804 163 21 11 chr5 56549532 56550095 -95987164 - L1_Mur2 LINE L1 -3220 2657 2089 6 1016 1471 141 37 10 chr5 56550094 56550224 -95987035 + L1_Mur2 LINE L1 1796 1926 -3951 6 1016 1062 14 29 0 chr5 56550224 56550363 -95986896 + (TAGA)n Simple_repeat Simple_repeat 4 146 0 6 1016 1471 141 37 10 chr5 56550363 56550481 -95986778 + L1_Mur2 LINE L1 1927 2050 -3827 6 1016 342 98 0 0 chr5 56550481 56550532 -95986727 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1016 1471 141 37 10 chr5 56550532 56550576 -95986683 + L1_Mur2 LINE L1 2051 2096 -3781 6 1016 2836 186 58 2 chr5 56550591 56551140 -95986119 - L1_Mur2 LINE L1 -6056 1030 451 6 1016 546 190 24 12 chr5 56551150 56551315 -95985944 - Lx9 LINE L1 -1 7643 7477 6 1016 219 103 0 0 chr5 56551316 56551355 -95985904 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 1016 5038 103 30 21 chr5 56551369 56552175 -95985084 + RLTR22_Mur LTR ERVK 1 813 -1035 7 1016 937 150 280 0 chr5 56552359 56552559 -95984700 + RLTR22_Mur LTR ERVK 1591 1846 -2 7 1016 326 278 23 38 chr5 56552578 56552709 -95984550 - Lx9 LINE L1 -201 7443 7315 6 1016 234 0 0 0 chr5 56552709 56552735 -95984524 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1016 850 211 136 4 chr5 56552742 56552985 -95984274 - Lx9 LINE L1 -717 6927 6653 6 1016 2453 262 58 46 chr5 56553045 56553810 -95983449 + Lx5 LINE L1 6117 6890 -160 7 1016 252 0 0 0 chr5 56553935 56553963 -95983296 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1016 3232 166 17 0 chr5 56553981 56554522 -95982737 - Lx2 LINE L1 -226 6771 6222 7 1016 22 0 0 0 chr5 56554523 56554545 -95982714 + AT_rich Low_complexity Low_complexity 1 22 0 7 1016 25 0 0 0 chr5 56554964 56554989 -95982270 + AT_rich Low_complexity Low_complexity 1 25 0 7 1016 23 0 0 0 chr5 56555022 56555045 -95982214 + AT_rich Low_complexity Low_complexity 1 23 0 7 1016 840 203 59 115 chr5 56555154 56555477 -95981782 - Lx7 LINE L1 0 7696 7392 7 1016 504 0 0 0 chr5 56555495 56555551 -95981708 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 7 1016 26 0 0 0 chr5 56555588 56555614 -95981645 + AT_rich Low_complexity Low_complexity 1 26 0 8 1016 370 261 11 0 chr5 56555631 56555723 -95981536 - Lx7 LINE L1 -1990 5706 5614 8 1016 26 0 0 0 chr5 56555727 56555753 -95981506 + AT_rich Low_complexity Low_complexity 1 26 0 8 1016 1565 219 58 2 chr5 56555753 56556146 -95981113 + L1_Mur3 LINE L1 2075 2489 -3391 8 1016 629 186 32 13 chr5 56556164 56556322 -95980937 + L1_Mur3 LINE L1 4195 4355 -1525 8 1016 629 66 11 0 chr5 56557230 56557321 -95979938 + (TCTA)n Simple_repeat Simple_repeat 2 93 0 8 1016 495 48 0 0 chr5 56557990 56558052 -95979207 + (CA)n Simple_repeat Simple_repeat 1 62 0 8 1016 307 307 84 14 chr5 56558367 56558509 -95978750 - Lx4B LINE L1 -6 7052 6901 8 1016 303 290 7 88 chr5 56558521 56558657 -95978602 - Lx4B LINE L1 -378 6680 6556 8 1016 381 129 0 0 chr5 56559667 56559737 -95977522 + (TA)n Simple_repeat Simple_repeat 2 71 0 8 1016 258 303 0 0 chr5 56560519 56560585 -95976674 + (CA)n Simple_repeat Simple_repeat 1 66 0 8 1016 198 71 0 0 chr5 56561483 56561511 -95975748 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1016 6687 76 3 8 chr5 56561522 56561986 -95975273 - L1_Mus1 LINE L1 -1 6566 6108 9 1016 2764 21 0 27 chr5 56561986 56562322 -95974937 + IAPLTR2b LTR ERVK 1 327 0 9 1016 6687 76 3 8 chr5 56562322 56562732 -95974527 - L1_Mus1 LINE L1 -460 6107 5696 9 1016 337 315 77 77 chr5 56562995 56563191 -95974068 - B3 SINE B2 0 198 3 9 1016 282 289 77 19 chr5 56563247 56563402 -95973857 - Kanga1d DNA Tc2 -186 423 260 9 1016 25 0 0 0 chr5 56563956 56563981 -95973278 + AT_rich Low_complexity Low_complexity 1 25 0 9 1016 4758 225 30 11 chr5 56564184 56564276 -95972983 - Lx2B LINE L1 -155 6845 6755 9 1016 189 0 0 0 chr5 56564276 56564297 -95972962 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1016 4758 225 30 11 chr5 56564297 56565254 -95972005 - Lx2B LINE L1 -246 6754 5777 9 1016 2493 166 51 57 chr5 56565256 56565450 -95971809 - L1_Mur1 LINE L1 -2215 3671 3487 9 1016 189 0 0 0 chr5 56565450 56565471 -95971788 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 9 1016 2493 166 51 57 chr5 56565471 56565792 -95971467 - L1_Mur1 LINE L1 -2400 3486 3151 9 1016 414 0 0 0 chr5 56565792 56565838 -95971421 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 1016 979 91 0 0 chr5 56565843 56565975 -95971284 - B1_Mus1 SINE Alu -15 133 2 1 1016 2493 166 51 57 chr5 56565975 56566084 -95971175 - L1_Mur1 LINE L1 -2736 3150 3044 9 1016 361 197 22 53 chr5 56567477 56567600 -95969659 + MTE2a LTR MaLR 1 127 -292 1 1016 22 35 0 0 chr5 56567641 56567670 -95969589 + AT_rich Low_complexity Low_complexity 1 29 0 1 1016 711 317 79 6 chr5 56567971 56568301 -95968958 + LTR53 LTR ERVL 126 479 -40 1 1016 22 70 0 0 chr5 56568390 56568433 -95968826 + AT_rich Low_complexity Low_complexity 1 43 0 1 1016 1012 82 19 6 chr5 56569221 56569381 -95967878 + Lx3_Mus LINE L1 6848 7009 0 1 1016 935 167 0 11 chr5 56569656 56569838 -95967421 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 1 1016 24 0 0 0 chr5 56571950 56571974 -95965285 + AT_rich Low_complexity Low_complexity 1 24 0 1 1016 889 304 96 38 chr5 56572168 56572336 -95964923 - L1MA10 LINE L1 0 6334 6157 1 1016 423 106 0 0 chr5 56572336 56572402 -95964857 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1016 889 304 96 38 chr5 56572402 56573048 -95964211 - L1MA10 LINE L1 -178 6156 5473 1 1016 2793 175 78 7 chr5 56574048 56574690 -95962569 + Lx4B LINE L1 5245 5976 -1024 1 1016 3176 200 108 1 chr5 56574706 56575373 -95961886 + Lx4B LINE L1 6076 6813 -245 1 1016 494 329 29 40 chr5 56575402 56575576 -95961683 + MTE-int LTR MaLR 827 998 -582 1 1016 646 290 30 30 chr5 56576048 56576315 -95960944 + RLTR15 LTR ERVK 1 267 -92 1 1016 742 189 13 13 chr5 56577525 56577680 -95959579 + RLTR42-int LTR ERVK 1230 1384 -4138 1 1016 4522 102 6 0 chr5 56579604 56580272 -95956987 + Lx3_Mus LINE L1 4129 4800 -1086 1 1016 35371 35 1 0 chr5 56580271 56586079 -95951180 + L1Md_T LINE L1 1 5589 -297 1 1016 8867 9 0 4 chr5 56586079 56587079 -95950180 + L1Md_T LINE L1 5590 6585 0 1 1016 664 94 0 0 chr5 56587095 56587191 -95950068 + Lx3_Mus LINE L1 4784 4879 -1007 1 1016 21 57 0 0 chr5 56587197 56587232 -95950027 + AT_rich Low_complexity Low_complexity 1 35 0 1 1016 749 115 0 8 chr5 56587240 56587363 -95949896 - L1_Mus2 LINE L1 0 6566 6445 1 1016 25944 143 78 6 chr5 56587363 56588612 -95948647 - L1_Mus4 LINE L1 -45 6591 5248 1 1016 381 70 0 0 chr5 56588612 56588669 -95948590 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1016 25944 150 22 3 chr5 56588669 56590407 -95946852 - L1_Mus4 LINE L1 -636 5247 3483 1 1016 198 0 0 0 chr5 56590407 56590429 -95946830 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1 1016 25944 149 33 2 chr5 56590429 56593312 -95943947 - L1_Mus4 LINE L1 -2401 3482 503 1 1016 7030 102 2 31 chr5 56593361 56594729 -95942530 + Lx3_Mus LINE L1 4867 6180 -829 1 1016 3264 122 4 2 chr5 56594729 56595214 -95942045 + Lx3_Mus LINE L1 6524 7009 0 1 1016 21 0 0 0 chr5 56595214 56595235 -95942024 + AT_rich Low_complexity Low_complexity 1 21 0 1 1016 433 328 22 51 chr5 56595289 56595562 -95941697 + L1MA7 LINE L1 5970 6234 -57 1 1016 1626 205 76 37 chr5 56595759 56596114 -95941145 + ORR1C1 LTR MaLR 5 373 -5 1 1016 656 302 89 36 chr5 56596233 56596594 -95940665 + MER90a LTR ERV1 1 380 -234 1 1016 513 264 18 55 chr5 56596596 56596760 -95940499 + Lx9 LINE L1 7159 7316 -328 1 1016 242 351 16 73 chr5 56597415 56597538 -95939721 + MTD LTR MaLR 6 121 -258 1 1016 518 304 83 65 chr5 56597660 56597889 -95939370 + MTD LTR MaLR 177 409 -10 1 1016 22 35 0 0 chr5 56597946 56597975 -95939284 + AT_rich Low_complexity Low_complexity 1 29 0 1 1016 22 0 0 0 chr5 56598314 56598336 -95938923 + AT_rich Low_complexity Low_complexity 1 22 0 1 1016 1124 82 0 0 chr5 56598670 56598816 -95938443 + B1_Mus1 SINE Alu 3 148 0 1 1016 303 228 92 35 chr5 56598837 56598978 -95938281 + L1M5 LINE L1 3073 3221 -2925 1 1016 21 0 0 0 chr5 56600413 56600434 -95936825 + AT_rich Low_complexity Low_complexity 1 21 0 1 1016 283 329 63 6 chr5 56600475 56600634 -95936625 + MLT1B LTR MaLR 62 229 -161 1 1016 842 151 182 11 chr5 56600715 56600902 -95936357 + RMER19C LTR ERVK 1 219 -392 1 1016 3049 194 43 16 chr5 56600916 56601538 -95935721 + MurERV4_19-int LTR ERVK 204 842 -4938 1 1016 953 30 7 83 chr5 56601544 56601688 -95935571 + B1_Mus2 SINE Alu 14 146 -1 1 1016 181 102 40 20 chr5 56601704 56601754 -95935505 + A-rich Low_complexity Low_complexity 4 54 0 1 1016 4515 164 44 7 chr5 56601756 56602577 -95934682 + MurERV4_19-int LTR ERVK 835 1685 -4095 1 1016 273 164 0 18 chr5 56602601 56602657 -95934602 + MurERV4_19-int LTR ERVK 1736 1790 -3990 1 1016 5699 154 95 83 chr5 56602639 56602716 -95934543 + MurERV4_19-int LTR ERVK 4254 4336 -1444 1 1016 186 43 0 0 chr5 56602716 56602739 -95934520 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 1016 5699 154 95 83 chr5 56602739 56603475 -95933784 + MurERV4_19-int LTR ERVK 4337 5075 -705 1 1016 468 0 0 0 chr5 56603475 56603527 -95933732 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1016 5699 154 95 83 chr5 56603527 56604216 -95933043 + MurERV4_19-int LTR ERVK 5076 5773 -7 1 1016 2770 184 24 108 chr5 56604223 56604888 -95932371 + RMER19C LTR ERVK 3 611 0 1 1016 4336 79 2 2 chr5 56605237 56605822 -95931437 - L1Md_F2 LINE L1 -640 5243 4659 1 1016 4692 68 3 0 chr5 56605817 56606572 -95930687 + L1Md_F2 LINE L1 5268 6026 -556 1 1016 58 54 0 0 chr5 56606783 56606876 -95930383 + AT_rich Low_complexity Low_complexity 1 93 0 1 1016 5682 5 0 0 chr5 56607583 56608215 -95929044 + L1Md_A LINE L1 5951 6582 0 1 1016 348 33 66 0 chr5 56608226 56608287 -95928972 + (CAAAAA)n Simple_repeat Simple_repeat 1 65 0 1 1016 28 29 0 0 chr5 56608555 56608590 -95928669 + AT_rich Low_complexity Low_complexity 1 35 0 1 1016 23 0 0 0 chr5 56608686 56608709 -95928550 + AT_rich Low_complexity Low_complexity 1 23 0 1 1016 369 0 0 0 chr5 56608720 56608761 -95928498 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1016 432 0 0 0 chr5 56608761 56608808 -95928451 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1016 270 0 0 0 chr5 56609163 56609193 -95928066 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1016 592 275 176 3 chr5 56609193 56609528 -95927731 - Lx9 LINE L1 -41 7603 7211 1 1016 550 304 13 13 chr5 56609830 56609980 -95927279 - Lx9 LINE L1 -434 7210 7061 1 1016 24 0 0 0 chr5 56610385 56610409 -95926850 + AT_rich Low_complexity Low_complexity 1 24 0 1 1016 659 112 9 0 chr5 56610868 56610975 -95926284 + (TA)n Simple_repeat Simple_repeat 2 109 0 1 1016 216 97 0 0 chr5 56611197 56611228 -95926031 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1016 684 99 99 0 chr5 56611328 56611449 -95925810 - L1_Mus1 LINE L1 0 6567 6435 1 1016 316 314 109 22 chr5 56612090 56612357 -95924902 + L1MA6 LINE L1 5944 6233 -67 1 1016 1243 261 6 112 chr5 56612363 56612721 -95924538 - MTC LTR MaLR -2 419 100 1 1016 651 159 0 0 chr5 56612721 56612834 -95924425 - Lx4B LINE L1 -1595 4282 4170 1 1016 2392 181 77 6 chr5 56612837 56613369 -95923890 + Lx4B LINE L1 4294 4863 -1014 1 1016 1838 173 21 6 chr5 56613372 56613698 -95923561 + ORR1A1 LTR MaLR 16 346 0 1 1016 6662 183 44 21 chr5 56613698 56615866 -95921393 + Lx4B LINE L1 4832 7053 -5 1 1016 332 153 311 0 chr5 56615866 56615962 -95921297 - MTC LTR MaLR -292 127 1 1 1016 26 30 0 0 chr5 56615962 56615995 -95921264 + AT_rich Low_complexity Low_complexity 1 33 0 1 1016 180 0 0 0 chr5 56616378 56616398 -95920861 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1016 363 309 57 67 chr5 56616426 56616797 -95920462 + L1MC5 LINE L1 7413 7779 -182 1 1016 1324 233 36 71 chr5 56617464 56617534 -95919725 + Lx7 LINE L1 7273 7329 -367 1 1016 2818 97 9 19 chr5 56617534 56617965 -95919294 + L1_Mus3 LINE L1 6212 6638 0 1 1016 1324 233 36 71 chr5 56617965 56618315 -95918944 + Lx7 LINE L1 7330 7678 -18 1 1016 459 155 0 0 chr5 56618431 56618515 -95918744 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1016 3578 186 84 4 chr5 56618529 56618791 -95918468 - RLTR25B LTR ERVK -219 809 521 1 1016 5713 66 23 29 chr5 56618791 56619576 -95917683 - L1Md_F2 LINE L1 0 6582 5803 1 1016 3578 186 84 4 chr5 56619576 56620062 -95917197 - RLTR25B LTR ERVK -508 520 3 1 1016 183 129 0 0 chr5 56620334 56620365 -95916894 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1 1016 490 138 18 0 chr5 56620358 56620467 -95916792 + (TA)n Simple_repeat Simple_repeat 2 112 0 1 1016 3022 36 0 0 chr5 56621512 56621906 -95915353 + L1Md_A LINE L1 6221 6582 0 1 1016 28 0 0 0 chr5 56622258 56622286 -95914973 + AT_rich Low_complexity Low_complexity 1 28 0 1 1016 333 0 0 0 chr5 56622431 56622468 -95914791 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1016 304 309 138 40 chr5 56622522 56622775 -95914484 + RLTR12B LTR ERVK 1 278 -250 1 1017 220 96 19 37 chr5 56623140 56623194 -95914065 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 1 1017 195 69 0 0 chr5 56623202 56623231 -95914028 + (TGGG)n Simple_repeat Simple_repeat 1 29 0 1 1017 483 158 0 0 chr5 56623525 56623604 -95913655 + CT-rich Low_complexity Low_complexity 43 121 0 1 1017 189 74 0 0 chr5 56623604 56623631 -95913628 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1017 483 158 0 0 chr5 56623631 56623671 -95913588 + polypyrimidine Low_complexity Low_complexity 3 42 0 1 1017 22 80 0 0 chr5 56624948 56624998 -95912261 + AT_rich Low_complexity Low_complexity 1 50 0 1 1017 315 0 0 0 chr5 56625025 56625060 -95912199 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1017 339 130 0 0 chr5 56625102 56625156 -95912103 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1017 281 153 7 15 chr5 56626104 56626171 -95911088 - Lx7 LINE L1 0 7696 7641 1 1017 459 0 0 0 chr5 56626427 56626478 -95910781 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1017 348 43 0 0 chr5 56626478 56626523 -95910736 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1017 681 13 0 0 chr5 56626523 56626600 -95910659 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 1017 417 291 67 26 chr5 56627523 56627717 -95909542 + B3 SINE B2 2 203 -13 1 1017 4733 75 9 9 chr5 56627843 56628490 -95908769 - L1Md_F2 LINE L1 -6 6576 5930 1 1017 2767 59 0 22 chr5 56628490 56628747 -95908512 + L1Md_F2 LINE L1 5531 5787 -96 1 1017 5196 7 0 0 chr5 56628747 56629326 -95907933 + L1Md_T LINE L1 6004 6582 0 1 1017 2767 57 0 22 chr5 56629326 56629484 -95907775 + L1Md_F2 LINE L1 5788 5938 -644 1 1017 284 348 158 18 chr5 56629500 56629948 -95907311 - Lx8 LINE L1 -2 7471 6961 1 1017 1157 74 0 0 chr5 56630355 56630503 -95906756 + B1_Mus1 SINE Alu 1 148 0 1 1017 367 277 426 22 chr5 56631067 56631344 -95905915 + L1M5 LINE L1 5412 5800 -394 1 1017 472 283 102 11 chr5 56631756 56631942 -95905317 - ORR1D1 LTR MaLR -6 368 166 1 1017 333 0 0 0 chr5 56631942 56631979 -95905280 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1017 627 84 0 0 chr5 56632016 56632111 -95905148 + (CAGAGA)n Simple_repeat Simple_repeat 2 96 0 1 1017 601 215 123 14 chr5 56632113 56632259 -95905000 - ORR1D1 LTR MaLR -210 164 3 1 1017 212 279 29 14 chr5 56632260 56632329 -95904930 + PB1D10 SINE Alu 27 96 -21 1 1017 312 242 30 10 chr5 56632343 56632445 -95904814 - MTD LTR MaLR -12 407 247 1 1017 619 354 40 37 chr5 56632474 56632850 -95904409 - MTEa LTR MaLR 0 379 3 1 1017 216 184 0 0 chr5 56632923 56632961 -95904298 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1 1017 567 108 0 0 chr5 56633014 56633116 -95904143 + (CA)n Simple_repeat Simple_repeat 1 102 0 1 1017 315 0 0 0 chr5 56633116 56633150 -95904109 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1017 21 71 0 0 chr5 56634408 56634450 -95902809 + AT_rich Low_complexity Low_complexity 1 42 0 1 1017 492 59 0 0 chr5 56634474 56634542 -95902717 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1017 219 170 21 0 chr5 56634543 56634590 -95902669 + GA-rich Low_complexity Low_complexity 2 49 0 2 1017 445 384 25 5 chr5 56634622 56634821 -95902438 + B4 SINE B4 86 288 -4 2 1017 252 362 30 45 chr5 56634970 56635103 -95902156 + MTEa LTR MaLR 249 379 0 2 1017 529 342 17 30 chr5 56635715 56635950 -95901309 - Lx8 LINE L1 -777 6696 6465 2 1017 699 298 14 42 chr5 56635991 56636205 -95901054 + B3 SINE B2 8 215 -1 2 1017 402 337 37 55 chr5 56636289 56636506 -95900753 + Lx8 LINE L1 7181 7393 -80 2 1017 1022 169 16 0 chr5 56636624 56636813 -95900446 + Lx2 LINE L1 6805 6996 -1 2 1017 22 35 0 0 chr5 56637815 56637844 -95899415 + AT_rich Low_complexity Low_complexity 1 29 0 2 1017 278 312 55 58 chr5 56638330 56638661 -95898598 - L1M3 LINE L1 -643 5657 5328 2 1017 226 210 65 0 chr5 56638703 56638765 -95898494 - L1M3 LINE L1 -869 5271 5206 2 1017 586 297 23 27 chr5 56638783 56639039 -95898220 + L1MA5 LINE L1 5674 5928 -372 2 1017 411 38 0 0 chr5 56640094 56640147 -95897112 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1017 384 22 0 0 chr5 56640147 56640191 -95897068 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1017 685 131 8 0 chr5 56640329 56640451 -95896808 - Lx2A1 LINE L1 -1 7007 6885 2 1017 292 125 42 0 chr5 56640453 56640501 -95896758 - L1_Mur1 LINE L1 -802 5084 5035 2 1017 3751 142 16 19 chr5 56640501 56641141 -95896118 + L1_Mur1 LINE L1 5234 5871 -15 2 1017 744 320 66 66 chr5 56642647 56643176 -95894083 + Lx8 LINE L1 6818 7346 -127 2 1017 6027 154 20 11 chr5 56643335 56643359 -95893900 + Lx3B LINE L1 5882 5905 -1068 2 1017 192 40 0 0 chr5 56643359 56643384 -95893875 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2 1017 6027 154 20 11 chr5 56643384 56644437 -95892822 + Lx3B LINE L1 5906 6969 -4 2 1017 37915 31 0 0 chr5 56644668 56651132 -95886127 - L1Md_T LINE L1 0 6585 26 2 1017 21 36 0 0 chr5 56651223 56651251 -95886008 + AT_rich Low_complexity Low_complexity 1 28 0 2 1017 973 329 70 49 chr5 56651703 56652040 -95885219 - Lx5 LINE L1 -78 6972 6631 2 1017 342 0 0 0 chr5 56652040 56652078 -95885181 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1017 973 329 70 49 chr5 56652078 56652169 -95885090 - Lx5 LINE L1 -420 6630 6535 2 1017 553 329 126 11 chr5 56652190 56652538 -95884721 - Lx5 LINE L1 -708 6342 5955 2 1017 6042 21 6 0 chr5 56652639 56653585 -95883674 - L1Md_T LINE L1 -280 6302 5348 2 1017 5373 37 0 0 chr5 56653585 56654227 -95883032 + L1Md_T LINE L1 5939 6580 -2 2 1017 4317 269 48 19 chr5 56654236 56654783 -95882476 - Lx6 LINE L1 -4 7456 6883 2 1017 656 24 12 0 chr5 56654783 56654865 -95882394 + (TC)n Simple_repeat Simple_repeat 2 84 0 2 1017 4317 269 48 19 chr5 56654865 56655514 -95881745 - Lx6 LINE L1 -578 6882 6226 2 1017 264 122 0 0 chr5 56655681 56655722 -95881537 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2 1017 315 371 23 41 chr5 56656387 56656696 -95880563 + Lx9 LINE L1 6986 7416 -228 2 1017 440 35 17 0 chr5 56656696 56656754 -95880505 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1017 251 291 28 39 chr5 56656768 56656950 -95880309 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 2 1017 298 279 24 24 chr5 56656879 56657048 -95880211 + (TA)n Simple_repeat Simple_repeat 2 170 0 2 1017 1125 80 0 12 chr5 56659592 56659756 -95877503 + L1Md_F2 LINE L1 6407 6568 -14 2 1017 310 388 54 42 chr5 56660071 56660367 -95876892 - MLT1E1 LTR MaLR -17 637 305 2 1017 23 68 0 0 chr5 56661301 56661345 -95875914 + AT_rich Low_complexity Low_complexity 1 44 0 2 1017 591 300 72 34 chr5 56662316 56662523 -95874736 - B3A SINE B2 -1 215 1 2 1017 368 287 43 35 chr5 56663016 56663157 -95874102 + MT2A LTR ERVL 222 363 -170 2 1017 482 293 82 14 chr5 56663217 56663425 -95873834 - Lx6 LINE L1 -7 7453 7232 2 1017 21 36 0 0 chr5 56663583 56663611 -95873648 + AT_rich Low_complexity Low_complexity 1 28 0 2 1017 1645 36 0 0 chr5 56663848 56664041 -95873218 - B2_Mm1a SINE B2 0 193 1 2 1017 1163 221 182 60 chr5 56664141 56664541 -95872718 - RMER6C LTR ERVK 0 690 261 2 1017 257 0 30 0 chr5 56664541 56664574 -95872685 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1017 1163 221 182 60 chr5 56664574 56664788 -95872471 - RMER6C LTR ERVK -430 260 2 2 1017 489 84 0 0 chr5 56664859 56664930 -95872329 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1017 1012 364 79 25 chr5 56664943 56665872 -95871387 - Lx8 LINE L1 -643 7053 6099 2 1017 22 0 0 0 chr5 56666074 56666096 -95871163 + AT_rich Low_complexity Low_complexity 1 22 0 2 1017 22 35 0 0 chr5 56666808 56666837 -95870422 + AT_rich Low_complexity Low_complexity 1 29 0 2 1017 306 0 0 0 chr5 56667389 56667423 -95869836 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1017 279 341 93 82 chr5 56667489 56667853 -95869406 - MLT1E3 LTR MaLR -117 507 140 2 1017 3275 185 52 6 chr5 56668354 56669012 -95868247 - Lx4B LINE L1 -742 6316 5629 2 1017 3445 197 34 39 chr5 56669010 56669287 -95867972 + Lx4B LINE L1 6328 6599 -459 2 1017 407 36 0 35 chr5 56669287 56669345 -95867914 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 2 1017 366 159 45 0 chr5 56669348 56669436 -95867823 - L1Md_F3 LINE L1 -1 6583 6492 2 1017 3445 197 34 39 chr5 56669436 56669882 -95867377 + Lx4B LINE L1 6600 7052 -6 2 1017 2294 67 6 9 chr5 56670686 56671004 -95866255 - L1Md_F2 LINE L1 -2 6580 6264 2 1017 1924 58 0 0 chr5 56671004 56671244 -95866015 - L1Md_F2 LINE L1 -433 6149 5910 2 1017 15017 73 1 2 chr5 56671240 56673228 -95864031 - L1_Mm LINE L1 -493 5390 3405 2 1017 4150 93 0 0 chr5 56673226 56673818 -95863441 + L1_Mm LINE L1 2838 3429 -2454 2 1017 1456 254 11 3 chr5 56674617 56674965 -95862294 + Lx6 LINE L1 7099 7449 -11 2 1017 217 163 23 0 chr5 56674989 56675032 -95862227 + GA-rich Low_complexity Low_complexity 3 46 0 2 1017 31700 131 8 21 chr5 56675505 56677037 -95860222 + L1Md_F2 LINE L1 457 1966 -3917 2 1017 368 20 20 0 chr5 56677037 56677086 -95860173 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 2 1017 31700 81 2 3 chr5 56677086 56678103 -95859156 + L1Md_F2 LINE L1 1967 2992 -2891 2 1017 3688 16 121 0 chr5 56678103 56678543 -95858716 + MT2_Mm LTR ERVL 1 493 0 2 1017 31700 81 2 3 chr5 56678543 56681145 -95856114 + L1Md_F2 LINE L1 2993 5582 -301 2 1017 7642 63 5 2 chr5 56681146 56682139 -95855120 + L1Md_F2 LINE L1 5587 6582 0 2 1017 605 226 0 6 chr5 56682414 56682592 -95854667 + (TA)n Simple_repeat Simple_repeat 2 178 0 2 1017 262 88 0 0 chr5 56682593 56682627 -95854632 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1017 1738 152 101 24 chr5 56682815 56683193 -95854066 - RLTR9E LTR ERVK -2 407 1 2 1017 8175 131 15 9 chr5 56683206 56684507 -95852752 - Lx2 LINE L1 0 6997 5690 2 1017 425 359 52 42 chr5 56685107 56685299 -95851960 - B4A SINE B4 -77 215 22 2 1017 23 33 0 0 chr5 56686093 56686123 -95851136 + AT_rich Low_complexity Low_complexity 1 30 0 2 1017 246 356 61 57 chr5 56686703 56686756 -95850503 - Lx8 LINE L1 -355 7118 7061 2 1017 200 34 0 33 chr5 56686756 56686786 -95850473 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 2 1017 246 356 61 57 chr5 56686786 56686961 -95850298 - Lx8 LINE L1 -413 7060 6889 2 1017 24 53 0 0 chr5 56687469 56687507 -95849752 + AT_rich Low_complexity Low_complexity 1 38 0 2 1017 363 44 0 0 chr5 56687997 56688042 -95849217 + (A)n Simple_repeat Simple_repeat 1 45 0 2 1017 2249 92 0 12 chr5 56688502 56688833 -95848426 + L1Md_F2 LINE L1 6256 6582 0 2 1017 477 0 0 0 chr5 56689366 56689419 -95847840 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1017 211 50 24 48 chr5 56689540 56689582 -95847677 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 2 1017 21 0 0 0 chr5 56689859 56689880 -95847379 + AT_rich Low_complexity Low_complexity 1 21 0 2 1017 1871 345 69 8 chr5 56689908 56690744 -95846515 + Lx8 LINE L1 6352 7238 -235 2 1017 303 85 0 0 chr5 56690747 56690794 -95846465 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 1017 32739 87 14 16 chr5 56691182 56697179 -95840080 - L1Md_F2 LINE L1 -10 6572 593 2 1017 441 36 0 0 chr5 56697663 56697718 -95839541 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1017 1914 205 81 45 chr5 56697718 56698225 -95839034 - RLTR11A LTR ERVK -3 525 1 2 1017 21 0 0 0 chr5 56699533 56699554 -95837705 + AT_rich Low_complexity Low_complexity 1 21 0 2 1017 27 29 0 0 chr5 56699635 56699669 -95837590 + AT_rich Low_complexity Low_complexity 1 34 0 2 1017 22 35 0 0 chr5 56699765 56699794 -95837465 + AT_rich Low_complexity Low_complexity 1 29 0 2 1017 2275 232 84 22 chr5 56700243 56700829 -95836430 + Lx6 LINE L1 6670 7291 -169 2 1017 251 338 110 7 chr5 56700890 56701045 -95836214 + Lx7 LINE L1 7193 7363 -333 2 1017 35 41 0 0 chr5 56701223 56701272 -95835987 + AT_rich Low_complexity Low_complexity 1 49 0 2 1017 22 0 0 0 chr5 56701422 56701444 -95835815 + AT_rich Low_complexity Low_complexity 1 22 0 2 1017 22 35 0 0 chr5 56701508 56701537 -95835722 + AT_rich Low_complexity Low_complexity 1 29 0 2 1017 734 0 12 0 chr5 56701711 56701797 -95835462 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 2 1017 2569 153 50 15 chr5 56701801 56702279 -95834980 - Lx3C LINE L1 -8 6968 6474 2 1017 45 34 0 0 chr5 56702397 56702456 -95834803 + AT_rich Low_complexity Low_complexity 1 59 0 2 1017 540 223 44 37 chr5 56702599 56702734 -95834525 + B1_Mus1 SINE Alu 13 148 0 2 1017 28 79 0 0 chr5 56702851 56702914 -95834345 + AT_rich Low_complexity Low_complexity 1 63 0 2 1017 21 71 0 0 chr5 56703054 56703096 -95834163 + AT_rich Low_complexity Low_complexity 1 42 0 2 1017 2073 109 64 13 chr5 56703265 56703638 -95833621 + Lx LINE L1 6262 6653 -1 2 1017 39 22 0 0 chr5 56703726 56703772 -95833487 + AT_rich Low_complexity Low_complexity 1 46 0 2 1017 270 375 108 42 chr5 56704001 56704168 -95833091 - MLT1F2 LTR MaLR -190 370 193 2 1017 450 194 22 98 chr5 56704209 56704392 -95832867 + Lx9 LINE L1 7453 7621 -23 2 1017 1500 159 0 8 chr5 56704833 56705092 -95832167 - Lx2A1 LINE L1 -72 6936 6680 2 1017 929 294 21 21 chr5 56705103 56705385 -95831874 + Lx6 LINE L1 7179 7460 0 2 1017 1207 119 0 30 chr5 56705388 56705588 -95831671 + B2_Mm2 SINE B2 2 195 0 2 1017 396 349 60 65 chr5 56706899 56707290 -95829969 - RLTR11A2 LTR ERVK -27 418 5 2 1017 24 77 0 0 chr5 56707323 56707375 -95829884 + AT_rich Low_complexity Low_complexity 1 52 0 2 1017 959 128 0 14 chr5 56707652 56707795 -95829464 - Lx3B LINE L1 -444 6529 6389 2 1017 676 156 51 25 chr5 56707808 56707966 -95829293 + Lx3B LINE L1 6811 6972 -1 3 1017 2597 178 26 6 chr5 56708255 56708763 -95828496 - Lx5 LINE L1 -288 5589 5072 3 1017 4488 238 62 45 chr5 56708757 56710026 -95827233 + Lx5 LINE L1 5596 6885 -165 3 1017 267 79 0 0 chr5 56710051 56710089 -95827170 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 3 1017 795 166 13 7 chr5 56710089 56710241 -95827018 - Lx4A LINE L1 -19 7039 6887 3 1017 600 83 0 0 chr5 56710305 56710401 -95826858 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 1017 30 59 0 0 chr5 56710606 56710657 -95826602 + AT_rich Low_complexity Low_complexity 1 51 0 3 1017 24 0 0 0 chr5 56711482 56711506 -95825753 + AT_rich Low_complexity Low_complexity 1 24 0 3 1017 300 167 61 49 chr5 56711663 56711745 -95825514 - Lx2B LINE L1 -2 6998 6916 3 1017 573 153 0 0 chr5 56711724 56711822 -95825437 + Lx2 LINE L1 6683 6780 -217 3 1017 1071 87 0 0 chr5 56712895 56713033 -95824226 + B1_Mus1 SINE Alu 3 140 -8 3 1017 249 108 0 0 chr5 56713042 56713079 -95824180 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1017 6216 132 28 4 chr5 56713395 56714603 -95822656 + L1_Mus2 LINE L1 5333 6566 0 3 1017 2269 252 16 35 chr5 56714639 56715352 -95821907 + Lx7 LINE L1 3539 4226 -1654 3 1017 2046 256 116 77 chr5 56715404 56716774 -95820485 + Lx7 LINE L1 5028 6425 -1271 3 1017 2669 254 49 34 chr5 56716789 56717624 -95819635 + Lx7 LINE L1 6849 7696 0 3 1017 180 0 0 0 chr5 56718708 56718728 -95818531 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 1017 510 17 0 0 chr5 56718728 56718786 -95818473 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1017 216 174 54 11 chr5 56719391 56719484 -95817775 + (TA)n Simple_repeat Simple_repeat 1 97 0 3 1017 365 39 0 19 chr5 56719635 56719687 -95817572 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 3 1017 22 0 0 0 chr5 56720068 56720090 -95817169 + AT_rich Low_complexity Low_complexity 1 22 0 3 1017 237 108 0 0 chr5 56720736 56720773 -95816486 + (TTATA)n Simple_repeat Simple_repeat 2 38 0 3 1017 23 54 0 0 chr5 56720863 56720900 -95816359 + AT_rich Low_complexity Low_complexity 1 37 0 3 1017 1467 150 11 8 chr5 56721538 56721800 -95815459 - Lx2A LINE L1 -2 7006 6744 3 1017 752 219 9 93 chr5 56722098 56722314 -95814945 + Lx3C LINE L1 6772 6969 -7 3 1017 429 70 0 0 chr5 56722348 56722405 -95814854 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1017 206 208 40 30 chr5 56722405 56722498 -95814761 + A-rich Low_complexity Low_complexity 7 100 0 3 1017 285 118 0 0 chr5 56722498 56722549 -95814710 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1017 348 177 10 30 chr5 56722583 56722682 -95814577 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 3 1017 484 330 70 45 chr5 56724051 56724410 -95812849 + Lx9 LINE L1 7074 7441 -203 3 1017 22 56 0 0 chr5 56724428 56724464 -95812795 + AT_rich Low_complexity Low_complexity 1 36 0 3 1017 366 371 0 45 chr5 56724862 56725082 -95812177 + Lx9 LINE L1 6957 7166 -478 3 1017 2362 260 30 33 chr5 56725620 56726293 -95810966 + Lx6 LINE L1 6629 7558 -138 3 1017 187 132 0 54 chr5 56726546 56726602 -95810657 + T-rich Low_complexity Low_complexity 3 55 0 3 1017 336 48 0 0 chr5 56726641 56726683 -95810576 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 3 1017 555 56 0 0 chr5 56726683 56726754 -95810505 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1017 8091 141 14 25 chr5 56726788 56728730 -95808529 - Lx3C LINE L1 -7 6969 5053 3 1017 1279 173 193 3 chr5 56728746 56729042 -95808217 - Lx3C LINE L1 -4040 1846 1495 3 1017 318 196 0 0 chr5 56729056 56729112 -95808147 - Lx3C LINE L1 -6231 753 698 3 1017 21 0 0 0 chr5 56729216 56729237 -95808022 + AT_rich Low_complexity Low_complexity 1 21 0 3 1017 502 269 100 25 chr5 56729386 56729546 -95807713 - ORR1D2 LTR MaLR 0 370 199 3 1017 360 43 0 0 chr5 56729562 56729608 -95807651 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1017 189 196 0 0 chr5 56729653 56729709 -95807550 + (TATG)n Simple_repeat Simple_repeat 4 59 0 3 1017 463 367 31 16 chr5 56729809 56730000 -95807259 - B4 SINE B4 -95 197 4 3 1017 924 272 145 6 chr5 56730336 56730661 -95806598 - ORR1D1 LTR MaLR -4 370 1 3 1017 236 53 26 0 chr5 56731132 56731170 -95806089 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 1017 573 55 0 0 chr5 56731206 56731279 -95805980 + (CAAAA)n Simple_repeat Simple_repeat 4 76 0 3 1017 603 258 28 2 chr5 56731351 56731505 -95805754 + B3 SINE B2 3 166 -27 3 1017 450 0 0 0 chr5 56731768 56731818 -95805441 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1017 234 0 0 0 chr5 56733611 56733637 -95803622 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3 1017 2304 53 46 0 chr5 56735553 56735855 -95801404 + L1_Mus1 LINE L1 6250 6565 -2 3 1017 332 43 22 0 chr5 56735963 56736009 -95801250 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 1017 692 326 84 35 chr5 56737217 56737837 -95799422 + L1MC2 LINE L1 5587 6236 -108 3 1017 21 0 0 0 chr5 56738161 56738182 -95799077 + AT_rich Low_complexity Low_complexity 1 21 0 3 1017 384 300 87 47 chr5 56738277 56738599 -95798660 - L1M4b LINE L1 -5524 1810 1476 3 1017 635 312 48 48 chr5 56740143 56740456 -95796803 - MLT1A0 LTR MaLR -3 362 50 3 1017 2979 275 42 89 chr5 56741693 56743101 -95794158 + RMER1A Other Other 7 1029 -1 3 1017 2785 87 50 2 chr5 56744678 56745081 -95792178 - BGLII_Mus LTR ERVK 0 422 1 3 1017 201 291 13 0 chr5 56745545 56745624 -95791635 + GA-rich Low_complexity Low_complexity 3 82 0 3 1017 21 57 0 0 chr5 56745945 56745980 -95791279 + AT_rich Low_complexity Low_complexity 1 35 0 3 1017 355 308 171 50 chr5 56746030 56746492 -95790767 - L1MD3 LINE L1 -89 7906 7389 3 1017 378 0 0 0 chr5 56748670 56748712 -95788547 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1017 260 322 44 0 chr5 56749041 56749131 -95788128 - Charlie24 DNA MER1_type -6 2444 2351 3 1017 825 94 158 0 chr5 56749774 56749901 -95787358 + B1_Mus2 SINE Alu 1 147 0 3 1017 261 0 0 0 chr5 56749901 56749930 -95787329 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1017 270 0 0 0 chr5 56750140 56750170 -95787089 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1017 259 276 26 46 chr5 56750285 56750437 -95786822 + Lx9 LINE L1 7490 7638 -6 3 1017 1084 76 7 0 chr5 56751123 56751267 -95785992 + B1_Mus2 SINE Alu 2 146 -1 3 1017 297 164 0 0 chr5 56751268 56751341 -95785918 + A-rich Low_complexity Low_complexity 1 73 0 3 1017 1068 206 9 0 chr5 56752013 56752227 -95785032 - Lx2 LINE L1 -620 6377 6162 3 1017 323 85 0 0 chr5 56752229 56752276 -95784983 + Lx2 LINE L1 6353 6399 -598 3 1017 462 36 0 0 chr5 56752296 56752352 -95784907 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1017 366 61 0 0 chr5 56752352 56752401 -95784858 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1017 198 0 0 0 chr5 56752403 56752425 -95784834 + (TAGA)n Simple_repeat Simple_repeat 1 22 0 3 1017 450 361 93 56 chr5 56752450 56752825 -95784434 - MT2A LTR ERVL -134 399 11 3 1017 5084 131 30 8 chr5 56753045 56753891 -95783368 + Lx3_Mus LINE L1 6136 6999 -10 3 127 3963 92 20 0 chr5 56754004 56754559 -95782700 + L1Md_F2 LINE L1 5020 5585 -298 3 1018 7327 75 8 17 chr5 56754560 56755565 -95781694 + L1Md_F2 LINE L1 5587 6582 0 3 1018 966 64 0 14 chr5 56755565 56755708 -95781551 + L1_Mus2 LINE L1 6426 6566 0 3 1018 5091 17 2 0 chr5 56755981 56756576 -95780683 + L1Md_A LINE L1 4989 5584 -299 3 1018 8077 45 0 0 chr5 56756578 56757586 -95779673 + L1Md_A LINE L1 5587 6582 0 3 1018 26 50 0 0 chr5 56760198 56760238 -95777021 + AT_rich Low_complexity Low_complexity 1 40 0 3 1018 408 116 35 0 chr5 56761047 56761133 -95776126 + CT-rich Low_complexity Low_complexity 2 90 0 3 1018 22 35 0 0 chr5 56761471 56761500 -95775759 + AT_rich Low_complexity Low_complexity 1 29 0 3 1018 278 231 108 21 chr5 56761643 56761736 -95775523 + ORR1D1 LTR MaLR 274 374 0 3 1018 23 68 0 0 chr5 56761981 56762025 -95775234 + AT_rich Low_complexity Low_complexity 1 44 0 3 1018 397 353 12 17 chr5 56762276 56762449 -95774810 + MLT1C LTR MaLR 294 465 -2 3 1018 1055 68 0 39 chr5 56762795 56762948 -95774311 + B1_Mm SINE Alu 1 147 0 3 1018 202 51 65 48 chr5 56762953 56763015 -95774244 + A-rich Low_complexity Low_complexity 4 66 0 3 1018 194 105 26 0 chr5 56763172 56763210 -95774049 + (TTTTTA)n Simple_repeat Simple_repeat 1 39 0 3 1018 405 0 0 0 chr5 56763733 56763778 -95773481 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1018 377 221 95 0 chr5 56764054 56764149 -95773110 - U1 snRNA snRNA -61 104 1 3 1018 313 286 18 49 chr5 56764781 56764883 -95772376 + PB1D10 SINE Alu 9 106 -11 3 1018 363 313 0 0 chr5 56764921 56765020 -95772239 + PB1D9 SINE Alu 9 107 -13 3 1018 795 283 93 0 chr5 56766405 56766642 -95770617 - MTD LTR MaLR -38 381 123 3 1018 425 103 15 0 chr5 56766921 56766989 -95770270 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1018 741 333 36 82 chr5 56768820 56769101 -95768158 + B4 SINE B4 8 275 -17 3 1018 549 44 0 0 chr5 56769371 56769439 -95767820 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1018 269 393 47 30 chr5 56769880 56770116 -95767143 + B4A SINE B4 31 270 -22 3 1018 411 38 0 0 chr5 56770125 56770178 -95767081 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1018 1087 83 7 0 chr5 56770605 56770750 -95766509 + B1_Mus2 SINE Alu 2 147 0 3 1018 26 74 0 0 chr5 56771279 56771333 -95765926 + AT_rich Low_complexity Low_complexity 1 54 0 3 1018 2591 53 0 9 chr5 56771598 56771921 -95765338 + L1_Mm LINE L1 5372 5691 -192 3 1018 7770 159 4 10 chr5 56771919 56773065 -95764194 - L1_Mm LINE L1 -1268 4615 3478 3 1018 398 36 18 0 chr5 56773065 56773121 -95764138 + (TTG)n Simple_repeat Simple_repeat 1 57 0 3 1018 7770 159 4 10 chr5 56773121 56773363 -95763896 - L1_Mm LINE L1 -2406 3477 3236 3 1018 6983 128 11 7 chr5 56773355 56774760 -95762499 + L1_Mus4 LINE L1 5226 6634 -2 3 1018 877 157 70 0 chr5 56774769 56774941 -95762318 - Lx2B LINE L1 -280 6720 6537 3 1018 1369 194 17 10 chr5 56774941 56775232 -95762027 + Lx2A1 LINE L1 6712 7004 -4 4 1018 494 262 159 4 chr5 56775238 56775386 -95761873 + RMER1C Other Other 1062 1222 -120 4 1018 780 68 0 0 chr5 56775386 56775489 -95761770 + (TCC)n Simple_repeat Simple_repeat 3 105 0 4 1018 494 262 159 4 chr5 56775489 56775566 -95761693 + RMER1C Other Other 1223 1321 -21 4 1018 335 265 0 22 chr5 56776600 56776636 -95760623 + polypurine Low_complexity Low_complexity 1 34 0 4 1018 259 65 43 0 chr5 56776636 56776682 -95760577 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1018 335 265 0 22 chr5 56776682 56776780 -95760479 + GA-rich Low_complexity Low_complexity 35 132 0 4 1018 916 174 160 0 chr5 56776799 56776860 -95760399 - MT2B LTR ERVL 0 601 541 4 1018 204 40 0 0 chr5 56776860 56776885 -95760374 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 1018 916 174 160 0 chr5 56776885 56777036 -95760223 - MT2B LTR ERVL -61 540 356 4 1018 310 382 72 34 chr5 56777045 56777338 -95759921 + RMER15 LTR ERVL 272 575 0 4 1018 564 41 8 0 chr5 56778377 56778500 -95758759 + (GAAA)n Simple_repeat Simple_repeat 1 123 0 4 1018 1005 153 0 0 chr5 56778500 56778676 -95758583 + GA-rich Low_complexity Low_complexity 3 178 0 4 1018 402 21 0 0 chr5 56778838 56778885 -95758374 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1018 423 233 0 0 chr5 56778996 56779172 -95758087 + GA-rich Low_complexity Low_complexity 2 177 0 4 1018 315 375 92 94 chr5 56780179 56780594 -95756665 + Zaphod DNA Tip100 99 512 -3519 4 1018 5359 70 16 1 chr5 56780719 56781424 -95755835 - L1Md_F2 LINE L1 -3 6579 5865 4 1018 815 250 116 15 chr5 56781462 56781730 -95755529 - Lx6 LINE L1 -18 7442 7148 4 1018 23 54 0 0 chr5 56781757 56781794 -95755465 + AT_rich Low_complexity Low_complexity 1 37 0 4 1018 236 236 11 43 chr5 56782730 56782823 -95754436 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 4 1018 977 107 0 0 chr5 56782971 56783111 -95754148 - B1_Mus1 SINE Alu -7 141 2 4 1018 3312 226 66 83 chr5 56785068 56786382 -95750877 - MYSERV6-int LTR ERVK 0 8959 7848 4 1018 205 29 29 29 chr5 56786382 56786417 -95750842 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1018 3103 256 123 110 chr5 56786417 56787058 -95750201 - MYSERV6-int LTR ERVK -1274 5276 4568 4 1018 1026 239 37 4 chr5 56787061 56787305 -95749954 + Lx5 LINE L1 6748 6999 -51 4 1018 5743 177 40 8 chr5 56787437 56788621 -95748638 - Lx2B LINE L1 -18 6982 5761 4 1018 599 281 40 50 chr5 56789157 56789434 -95747825 - RLTR15 LTR ERVK -76 283 10 4 1018 297 352 0 9 chr5 56790878 56790984 -95746275 - PB1D10 SINE Alu -12 105 1 4 1018 447 147 0 0 chr5 56790995 56791063 -95746196 - ORR1B2 LTR MaLR -52 315 248 4 1018 450 0 0 0 chr5 56791259 56791309 -95745950 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1018 939 300 72 11 chr5 56792019 56792366 -95744893 + ORR1D2 LTR MaLR 3 370 0 4 1018 24 32 0 0 chr5 56792447 56792478 -95744781 + AT_rich Low_complexity Low_complexity 1 31 0 4 1018 12630 22 0 0 chr5 56793004 56794482 -95742777 + L1Md_T LINE L1 4109 5586 -297 4 1018 8808 12 1 0 chr5 56794482 56795477 -95741782 + L1Md_T LINE L1 5587 6582 0 4 1018 204 67 0 0 chr5 56795512 56795542 -95741717 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1018 1839 193 15 80 chr5 56796161 56796573 -95740686 - ORR1B1 LTR MaLR -9 385 1 4 1018 321 26 0 0 chr5 56796658 56796696 -95740563 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1018 25 31 0 0 chr5 56797011 56797043 -95740216 + AT_rich Low_complexity Low_complexity 1 32 0 4 1018 207 0 0 0 chr5 56797675 56797698 -95739561 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1018 523 302 19 11 chr5 56797814 56797996 -95739263 + Lx7 LINE L1 7519 7680 -16 4 1018 23 54 0 0 chr5 56798171 56798208 -95739051 + AT_rich Low_complexity Low_complexity 1 37 0 4 1018 354 254 148 16 chr5 56799482 56799610 -95737649 - B1_Mm SINE Alu -1 146 2 4 1018 2189 285 72 24 chr5 56799712 56801080 -95736179 - Lx7 LINE L1 -891 6805 5351 4 1018 399 206 69 190 chr5 56801073 56801289 -95735970 - Lx LINE L1 -1 6653 6464 4 1018 3273 239 31 16 chr5 56801268 56802235 -95735024 - Lx7 LINE L1 -511 5369 4389 4 1018 1047 199 53 30 chr5 56802240 56802505 -95734754 + L1_Mur3 LINE L1 2177 2447 -3433 4 1018 460 329 7 20 chr5 56802566 56802712 -95734547 - B1_Mur1 SINE Alu 0 149 6 4 1018 739 320 10 5 chr5 56802881 56803085 -95734174 + B3 SINE B2 10 214 -2 4 1018 1013 127 6 0 chr5 56803161 56803335 -95733924 + L1_Mus4 LINE L1 5696 5841 -795 4 1018 1473 51 0 0 chr5 56803332 56803508 -95733751 - L1_Mus4 LINE L1 -380 6187 6012 4 1018 251 118 0 0 chr5 56803507 56803541 -95733718 + L1_Mus4 LINE L1 6208 6241 -326 4 1018 459 244 75 1 chr5 56804114 56804246 -95733013 - B1_Mur2 SINE Alu -5 144 5 4 1018 268 302 43 80 chr5 56804154 56804341 -95732918 - MT2B LTR ERVL -344 257 78 4 1018 1074 76 21 0 chr5 56804914 56805058 -95732201 + B1_Mus2 SINE Alu 1 147 0 4 1018 381 32 15 31 chr5 56805074 56805139 -95732120 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 4 1018 324 296 66 7 chr5 56805486 56805622 -95731637 + MER67C LTR ERV1 1 144 -370 4 1018 347 328 48 67 chr5 56805642 56805851 -95731408 + MER67C LTR ERV1 175 379 -332 4 1018 269 280 32 0 chr5 56806548 56806641 -95730618 + (CAGAGA)n Simple_repeat Simple_repeat 6 101 0 4 1018 18227 107 95 168 chr5 56807437 56809162 -95728097 + L1Md_F2 LINE L1 190 1925 -3958 4 1018 750 192 366 85 chr5 56809162 56809617 -95727642 - RLTR6_Mm LTR ERV1 -70 584 1 4 1018 18227 107 95 168 chr5 56809617 56813040 -95724219 + L1Md_F2 LINE L1 1926 5373 -510 4 1018 3202 48 0 25 chr5 56813040 56813446 -95723813 + MTA_Mm LTR MaLR 1 396 0 4 1018 18227 96 109 202 chr5 56813446 56813663 -95723596 + L1Md_F2 LINE L1 5374 5585 -298 4 1018 6527 103 16 27 chr5 56813664 56814669 -95722590 + L1Md_F2 LINE L1 5587 6580 -2 4 1018 1129 258 21 159 chr5 56814704 56814763 -95722496 - ORR1B1 LTR MaLR -1 377 337 4 1018 1041 113 15 89 chr5 56814763 56814966 -95722293 - L1_Mus2 LINE L1 -2 6564 6377 4 1018 1590 215 34 38 chr5 56814966 56815339 -95721920 - ORR1B1 LTR MaLR -46 348 5 4 1018 751 100 221 8 chr5 56815380 56815511 -95721748 - L1_Mus2 LINE L1 0 6566 6408 4 1018 257 128 0 21 chr5 56815769 56815817 -95721442 + (TCTCCC)n Simple_repeat Simple_repeat 2 48 0 4 1018 306 0 0 0 chr5 56815963 56815997 -95721262 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1018 26 50 0 0 chr5 56816066 56816106 -95721153 + AT_rich Low_complexity Low_complexity 1 40 0 4 1018 4344 75 30 12 chr5 56816277 56816874 -95720385 - L1Md_F2 LINE L1 0 6582 5975 4 1018 201 132 0 0 chr5 56816928 56816966 -95720293 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1018 288 206 76 49 chr5 56817382 56817466 -95719793 - Lx9 LINE L1 -5 7639 7555 4 1018 212 0 36 0 chr5 56817466 56817494 -95719765 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1018 288 206 76 49 chr5 56817494 56817562 -95719697 - Lx9 LINE L1 -90 7554 7480 4 1018 1580 56 23 5 chr5 56817562 56817776 -95719483 + L1Md_F3 LINE L1 6365 6582 -2 4 1018 288 206 76 49 chr5 56817776 56817806 -95719453 - Lx9 LINE L1 -165 7479 7452 4 1018 400 248 14 14 chr5 56817823 56817962 -95719297 - Lx9 LINE L1 -151 7493 7355 4 1018 369 331 111 29 chr5 56818005 56818356 -95718903 - L1MEc LINE L1 -4919 1481 1102 4 1018 206 136 23 0 chr5 56818393 56818437 -95718822 + CT-rich Low_complexity Low_complexity 2 46 0 4 1018 533 129 20 0 chr5 56818436 56818537 -95718722 + (TATG)n Simple_repeat Simple_repeat 4 106 0 4 1018 899 138 0 112 chr5 56819150 56819346 -95717913 + Lx3B LINE L1 6795 6968 -5 4 1018 216 0 0 0 chr5 56819386 56819410 -95717849 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1018 349 130 0 0 chr5 56819781 56819835 -95717424 + B1_Mur4 SINE Alu 96 149 -1 4 1018 1046 126 9 0 chr5 56819839 56820053 -95717206 + (GAAA)n Simple_repeat Simple_repeat 1 216 0 4 1018 7739 93 94 1 chr5 56820129 56822062 -95715197 + L1Md_F2 LINE L1 1819 5586 -297 4 1018 7061 78 23 3 chr5 56822063 56823026 -95714233 + L1Md_F2 LINE L1 5588 6569 -13 4 1018 22 35 0 0 chr5 56827982 56828011 -95709248 + AT_rich Low_complexity Low_complexity 1 29 0 4 1018 23 33 0 0 chr5 56828431 56828461 -95708798 + AT_rich Low_complexity Low_complexity 1 30 0 4 1018 285 29 0 0 chr5 56828684 56828718 -95708541 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1018 438 20 0 0 chr5 56828718 56828768 -95708491 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1018 28 29 0 0 chr5 56829179 56829214 -95708045 + AT_rich Low_complexity Low_complexity 1 35 0 4 1018 1224 67 0 0 chr5 56829727 56829907 -95707352 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1018 405 0 0 0 chr5 56829907 56829952 -95707307 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1018 827 260 124 7 chr5 56829953 56830236 -95707023 - Lx9 LINE L1 -227 7417 7102 4 1018 306 0 0 0 chr5 56830248 56830282 -95706977 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1018 549 0 0 0 chr5 56830461 56830522 -95706737 + (GA)n Simple_repeat Simple_repeat 1 61 0 4 1018 641 301 37 25 chr5 56834452 56834694 -95702565 - Lx9 LINE L1 -1041 6603 6359 4 1018 313 109 15 15 chr5 56835361 56835426 -95701833 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1018 27 0 0 0 chr5 56835616 56835643 -95701616 + AT_rich Low_complexity Low_complexity 1 27 0 4 1018 189 107 0 0 chr5 56835790 56835818 -95701441 + (CATAT)n Simple_repeat Simple_repeat 3 30 0 4 1018 471 271 31 58 chr5 56835823 56836082 -95701177 - L1M4b LINE L1 -4451 2883 2632 4 1018 612 101 0 0 chr5 56836096 56836185 -95701074 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 1018 1879 216 195 23 chr5 56836485 56837130 -95700129 - RMER6A LTR ERVK 0 756 1 4 1018 308 307 30 60 chr5 56837336 56837568 -95699691 - L1M4b LINE L1 -5547 1787 1563 4 1018 2512 115 20 22 chr5 56839052 56839453 -95697806 + Lx LINE L1 6250 6649 -5 4 1018 1183 175 0 5 chr5 56841006 56841224 -95696035 - Lx2 LINE L1 0 6997 6781 4 1018 698 104 0 13 chr5 56841226 56841338 -95695921 - Lx2 LINE L1 -352 6645 6550 4 1018 229 357 13 65 chr5 56842770 56842923 -95694336 + MER3 DNA MER1_type 2 146 -63 4 1018 1529 184 34 43 chr5 56844095 56844418 -95692841 + L1VL2 LINE L1 282 601 -5734 4 1018 2636 83 3 11 chr5 56844433 56844809 -95692450 + L1_Mus2 LINE L1 6194 6566 0 4 1018 34 0 0 0 chr5 56844809 56844843 -95692416 + AT_rich Low_complexity Low_complexity 1 34 0 4 1018 392 281 29 25 chr5 56844872 56845113 -95692146 + L1M3 LINE L1 5065 5306 -834 4 1018 272 143 14 0 chr5 56845116 56845186 -95692073 + A-rich Low_complexity Low_complexity 4 74 0 4 1018 674 150 1 65 chr5 56845639 56845782 -95691477 - Lx5 LINE L1 -1560 5900 5770 4 1018 218 143 0 20 chr5 56845808 56845858 -95691401 + GA-rich Low_complexity Low_complexity 2 50 0 4 1018 336 102 0 0 chr5 56846177 56846226 -95691033 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1018 315 380 48 19 chr5 56846264 56846473 -95690786 + B4 SINE B4 55 269 -23 5 1018 399 41 0 0 chr5 56846484 56846533 -95690726 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1018 22 0 0 0 chr5 56846725 56846747 -95690512 + AT_rich Low_complexity Low_complexity 1 22 0 5 1018 22 0 0 0 chr5 56847207 56847229 -95690030 + AT_rich Low_complexity Low_complexity 1 22 0 5 1018 235 368 0 93 chr5 56847582 56847732 -95689527 + RSINE1 SINE B4 13 148 -17 5 1018 402 120 0 0 chr5 56847736 56847811 -95689448 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1018 1433 231 71 6 chr5 56848244 56848597 -95688662 - ORR1C1 LTR MaLR -2 376 1 5 1018 342 0 0 0 chr5 56848886 56848924 -95688335 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1018 6501 125 27 6 chr5 56849737 56850496 -95686763 - L1_Mus3 LINE L1 -2 6636 5860 5 1018 360 0 0 0 chr5 56850496 56850536 -95686723 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1018 11318 122 5 2 chr5 56850536 56852265 -95684994 - L1_Mus3 LINE L1 -779 5859 4126 5 1018 3942 174 13 77 chr5 56852262 56853802 -95683457 - L1_Mus3 LINE L1 -4047 1836 420 5 1018 482 328 114 29 chr5 56854039 56854589 -95682670 - L1M2 LINE L1 -2197 3946 3350 5 1018 1561 222 61 23 chr5 56855741 56856137 -95681122 - RMER6A LTR ERVK 0 756 346 5 1018 279 54 0 0 chr5 56856139 56856176 -95681083 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 5 1018 1160 183 112 8 chr5 56856185 56856444 -95680815 - Lx2B LINE L1 -375 5508 5223 5 1018 7526 180 33 21 chr5 56856447 56857914 -95679345 + Lx2B LINE L1 5518 6995 -5 5 1018 203 185 62 0 chr5 56857988 56858053 -95679206 + (AACTG)n Simple_repeat Simple_repeat 1 69 0 5 1018 267 250 0 191 chr5 56858084 56858168 -95679091 - RLTR25A LTR ERVK -515 588 521 5 1018 486 190 0 0 chr5 56858110 56858189 -95679070 - MT2B LTR ERVL -342 259 181 5 1018 37 23 0 0 chr5 56860263 56860307 -95676952 + AT_rich Low_complexity Low_complexity 1 44 0 5 1018 6429 105 14 1 chr5 56860347 56861673 -95675586 + L1VL1 LINE L1 193 1537 -2161 5 1018 8034 45 1 0 chr5 56861672 56862745 -95674514 + L1Md_F2 LINE L1 5479 6552 -30 5 1018 35276 36 1 0 chr5 56862744 56868611 -95668648 + L1Md_T LINE L1 1 5589 -297 5 1018 8925 7 0 0 chr5 56868611 56869607 -95667652 + L1Md_T LINE L1 5590 6585 0 5 1018 23651 124 10 61 chr5 56869621 56871394 -95665865 + L1_Mus1 LINE L1 1711 3403 -3164 5 1018 313 77 0 37 chr5 56871394 56871448 -95665811 - B1_Mm SINE Alu 0 147 96 5 1018 23651 124 10 61 chr5 56871448 56874753 -95662506 + L1_Mus1 LINE L1 3404 6562 -5 5 1018 308 368 0 0 chr5 56875044 56875161 -95662098 - ID_B1 SINE B4 0 224 108 5 1018 27 29 0 0 chr5 56875170 56875204 -95662055 + AT_rich Low_complexity Low_complexity 1 34 0 5 1018 26 50 0 0 chr5 56875381 56875421 -95661838 + AT_rich Low_complexity Low_complexity 1 40 0 5 1018 23 33 0 0 chr5 56875615 56875645 -95661614 + AT_rich Low_complexity Low_complexity 1 30 0 5 1018 2123 81 3 69 chr5 56875917 56876250 -95661009 - L1Md_F2 LINE L1 -413 6169 5859 5 1018 2856 92 7 7 chr5 56876250 56876654 -95660605 + L1Md_F2 LINE L1 6179 6582 0 5 1018 570 151 0 23 chr5 56877241 56877370 -95659889 + Lx3A LINE L1 6855 6980 -1 5 1018 22 35 0 0 chr5 56877540 56877569 -95659690 + AT_rich Low_complexity Low_complexity 1 29 0 5 1018 371 371 36 64 chr5 56878601 56878820 -95658439 + MLT1F1 LTR MaLR 261 473 -96 5 1018 28 79 0 0 chr5 56879699 56879762 -95657497 + AT_rich Low_complexity Low_complexity 1 63 0 5 1018 306 0 0 0 chr5 56879961 56879995 -95657264 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1018 529 240 27 27 chr5 56879995 56880145 -95657114 - B1_Mur4 SINE Alu 0 150 1 5 1018 315 289 80 15 chr5 56880876 56881076 -95656183 + L1_Rod LINE L1 490 702 -6470 5 1018 1543 110 22 0 chr5 56881147 56881375 -95655884 + L1_Mus2 LINE L1 6303 6535 -31 5 1018 266 158 18 0 chr5 56881741 56881798 -95655461 + L1_Rod LINE L1 1236 1293 -4554 5 1018 34 46 0 15 chr5 56881973 56881993 -95655266 + AT_rich Low_complexity Low_complexity 1 20 0 5 1018 1078 65 7 0 chr5 56881993 56882132 -95655127 - B1_Mus1 SINE Alu -6 142 3 5 1018 34 46 0 15 chr5 56882132 56882177 -95655082 + AT_rich Low_complexity Low_complexity 1 45 0 5 1018 647 329 83 83 chr5 56882543 56883188 -95654071 + MLT1E2 LTR MaLR 1 622 -5 5 1018 388 286 110 12 chr5 56883330 56883493 -95653766 + RMER1B Other Other 290 468 -598 5 1018 991 279 81 15 chr5 56883492 56883707 -95653552 + RMER1B Other Other 634 858 -208 5 1018 1215 88 0 0 chr5 56883707 56883877 -95653382 + (TTTCC)n Simple_repeat Simple_repeat 4 173 0 5 1018 991 279 81 15 chr5 56883877 56884057 -95653202 + RMER1B Other Other 859 1055 -11 5 1018 1919 138 7 0 chr5 56884114 56884419 -95652840 - L1_Mur1 LINE L1 -936 4950 4644 5 127 30958 29 0 0 chr5 56884407 56889839 -95647420 + L1Md_T LINE L1 61 5589 -297 5 1019 8973 6 0 0 chr5 56889839 56890835 -95646424 + L1Md_T LINE L1 5590 6585 0 5 1019 2387 98 14 0 chr5 56890850 56891209 -95646050 - L1_Mur1 LINE L1 -1220 4666 4303 5 1019 297 51 0 0 chr5 56891297 56891336 -95645923 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1019 381 43 0 0 chr5 56891336 56891382 -95645877 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1019 501 354 9 59 chr5 56891413 56891632 -95645627 - B3 SINE B2 -8 208 1 5 1019 189 0 0 0 chr5 56891848 56891869 -95645390 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 1019 301 297 35 43 chr5 56893243 56893359 -95643900 + MLT1B LTR MaLR 195 309 -81 5 1019 484 276 43 36 chr5 56894121 56894260 -95642999 + MLT1A0 LTR MaLR 1 140 -225 5 1019 761 154 7 0 chr5 56894492 56894635 -95642624 + GA-rich Low_complexity Low_complexity 2 145 0 5 1019 198 0 0 0 chr5 56895354 56895376 -95641883 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 5 1019 307 325 25 8 chr5 56897206 56897324 -95639935 - PB1D7 SINE Alu 0 120 1 5 1019 310 253 110 0 chr5 56897384 56897475 -95639784 + MLT1A0 LTR MaLR 315 415 -52 5 1019 261 291 113 28 chr5 56897699 56897823 -95639436 + PB1D7 SINE Alu 3 125 -2 5 1019 25 31 0 0 chr5 56898087 56898119 -95639140 + AT_rich Low_complexity Low_complexity 1 32 0 5 1019 477 323 25 0 chr5 56900278 56900479 -95636780 - Lx8 LINE L1 -611 6862 6657 5 1019 186 133 0 0 chr5 56900676 56900706 -95636553 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1019 23 0 0 0 chr5 56901895 56901918 -95635341 + AT_rich Low_complexity Low_complexity 1 23 0 5 1019 5126 59 5 9 chr5 56901968 56902634 -95634625 + L1Md_F2 LINE L1 5909 6571 -11 5 1019 531 0 0 0 chr5 56902641 56902700 -95634559 + (TA)n Simple_repeat Simple_repeat 1 59 0 5 1019 192 152 0 0 chr5 56902736 56902769 -95634490 + A-rich Low_complexity Low_complexity 1 33 0 5 1019 3157 131 115 4 chr5 56902893 56903431 -95633828 + Lx LINE L1 6057 6654 0 5 1019 277 283 29 57 chr5 56903827 56903932 -95633327 + RLTR25B LTR ERVK 915 1016 -12 5 1019 345 233 31 1 chr5 56904120 56904209 -95633050 - MLT1A LTR MaLR 0 408 283 5 1019 2730 290 113 45 chr5 56905378 56906902 -95630357 - Tigger1 DNA MER2_type -86 2332 705 5 1019 1025 97 7 0 chr5 56906916 56907061 -95630198 + B1_Mus1 SINE Alu 3 148 0 5 1019 274 343 116 12 chr5 56907138 56907389 -95629870 - Tigger1 DNA MER2_type -1725 693 417 5 1019 899 314 25 80 chr5 56907390 56907826 -95629433 - MTD LTR MaLR -2 417 6 5 1019 509 282 24 49 chr5 56909700 56909905 -95627354 + Lx8 LINE L1 6710 6909 -564 5 1019 524 229 281 12 chr5 56909914 56910164 -95627095 + ORR1D1 LTR MaLR 6 322 -52 5 1019 351 0 0 0 chr5 56910299 56910338 -95626921 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1019 706 151 56 50 chr5 56910496 56910656 -95626603 + Lx6 LINE L1 6717 6877 -583 5 1019 573 42 0 0 chr5 56910656 56910728 -95626531 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1019 314 80 20 0 chr5 56910728 56910778 -95626481 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1019 333 354 165 0 chr5 56911408 56911535 -95625724 - RSINE1 SINE B4 -8 157 10 5 1019 479 188 59 17 chr5 56911739 56911753 -95625506 - ID_B1 SINE B4 -6 218 95 5 1019 789 67 0 0 chr5 56911753 56911858 -95625401 - B1_Mm SINE Alu -29 118 14 5 1019 2296 179 7 2 chr5 56912138 56912574 -95624685 + L1_Mur2 LINE L1 4913 5350 -527 5 1019 387 0 0 0 chr5 56912574 56912617 -95624642 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1019 33 56 0 0 chr5 56914935 56914989 -95622270 + AT_rich Low_complexity Low_complexity 1 54 0 5 1019 21 0 0 0 chr5 56915024 56915045 -95622214 + AT_rich Low_complexity Low_complexity 1 21 0 5 1019 335 333 42 7 chr5 56915582 56915724 -95621535 + Lx6 LINE L1 7149 7295 -165 5 1019 348 111 0 0 chr5 56915727 56915790 -95621469 + (TATG)n Simple_repeat Simple_repeat 1 63 0 5 1019 1074 62 7 14 chr5 56915841 56915852 -95621407 - B1_Mus2 SINE Alu 0 147 137 5 1019 294 38 38 19 chr5 56915852 56915905 -95621354 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 5 1019 1074 62 7 14 chr5 56915905 56916041 -95621218 - B1_Mus2 SINE Alu -11 136 1 5 1019 339 25 0 0 chr5 56916168 56916208 -95621051 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1019 291 264 0 0 chr5 56916222 56916355 -95620904 + T-rich Low_complexity Low_complexity 1 133 0 5 1019 2048 279 162 26 chr5 56916356 56917262 -95619997 - Lx6 LINE L1 -26 7434 6185 5 1019 3155 179 115 21 chr5 56917258 56918128 -95619131 - L1_Mur2 LINE L1 -1363 4517 3505 5 1019 31199 100 2 18 chr5 56918118 56920651 -95616608 + L1Md_F2 LINE L1 98 2264 -3619 5 1019 4177 29 12 0 chr5 56920651 56921138 -95616121 + MT2_Mm LTR ERVL 1 493 0 5 1019 31199 86 1 10 chr5 56921138 56924470 -95612789 + L1Md_F2 LINE L1 2265 5585 -298 5 1019 7771 57 4 1 chr5 56924471 56925464 -95611795 + L1Md_F2 LINE L1 5587 6582 0 5 1019 3841 193 91 27 chr5 56925469 56926505 -95610754 - L1_Mur2 LINE L1 -2351 3526 2425 5 1019 515 253 48 70 chr5 56926645 56926832 -95610427 + B3 SINE B2 28 210 -6 5 1019 422 261 70 7 chr5 56926863 56927012 -95610247 + L1M3 LINE L1 5510 5669 -571 5 1019 24 32 0 0 chr5 56927098 56927129 -95610130 + AT_rich Low_complexity Low_complexity 1 31 0 5 1019 1649 126 0 23 chr5 56927140 56927401 -95609858 - Lx LINE L1 0 6654 6400 5 1019 200 94 31 0 chr5 56928525 56928557 -95608702 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1019 189 94 0 0 chr5 56928609 56928641 -95608618 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1019 1089 38 0 0 chr5 56928863 56928996 -95608263 - L1_Mus3 LINE L1 -813 5825 5693 5 1019 3849 91 0 4 chr5 56929000 56929619 -95607640 - L1_Mus1 LINE L1 0 6567 6039 5 1019 5365 102 13 1 chr5 56929617 56930401 -95606858 + L1_Mus1 LINE L1 5774 6566 -1 5 1019 1276 138 15 0 chr5 56930565 56930761 -95606498 + Lx2 LINE L1 6620 6818 -179 6 1019 1767 118 7 0 chr5 56931098 56931377 -95605882 - L1_Mm LINE L1 -1787 4096 3816 6 1019 7705 74 0 0 chr5 56931366 56932429 -95604830 + L1_Mus1 LINE L1 5505 6567 0 6 1019 23 0 0 0 chr5 56934189 56934212 -95603047 + AT_rich Low_complexity Low_complexity 1 23 0 6 1019 346 326 71 39 chr5 56934446 56934628 -95602631 - B3 SINE B2 0 216 29 6 1019 1292 209 40 15 chr5 56936404 56936773 -95600486 - RLTR28 LTR ERVL 0 524 118 6 1019 4130 54 2 6 chr5 56936775 56937296 -95599963 - L1Md_F3 LINE L1 0 6584 6066 6 1019 2135 32 0 0 chr5 56937296 56937548 -95599711 + L1Md_F3 LINE L1 5759 6010 -574 6 1019 588 244 57 0 chr5 56937548 56937671 -95599588 - RLTR28 LTR ERVL -351 130 1 6 1019 432 0 0 0 chr5 56937776 56937824 -95599435 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1019 25 0 0 0 chr5 56937870 56937895 -95599364 + AT_rich Low_complexity Low_complexity 1 25 0 6 1019 21 0 0 0 chr5 56937912 56937933 -95599326 + AT_rich Low_complexity Low_complexity 1 21 0 6 1019 1599 216 24 21 chr5 56937943 56938279 -95598980 - RMER15 LTR ERVL -233 342 6 6 1019 753 244 142 35 chr5 56938288 56938465 -95598794 + Lx9 LINE L1 7301 7517 -127 6 1019 381 43 0 0 chr5 56938465 56938512 -95598747 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1019 753 244 142 35 chr5 56938512 56938644 -95598615 + Lx9 LINE L1 7518 7643 -1 6 1019 262 263 20 20 chr5 56939382 56939483 -95597776 + T-rich Low_complexity Low_complexity 2 102 0 6 1019 394 335 37 46 chr5 56939966 56939994 -95597265 - B3 SINE B2 0 216 190 6 1019 441 0 0 0 chr5 56939994 56940043 -95597216 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1019 453 335 37 46 chr5 56940043 56940230 -95597029 - B3A SINE B2 -27 189 3 6 1019 189 74 0 0 chr5 56940242 56940269 -95596990 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1019 360 115 0 49 chr5 56940492 56940574 -95596685 - L1Md_F2 LINE L1 -1 6581 6504 6 1019 6695 108 12 32 chr5 56940609 56941652 -95595607 - RLTR13D5 LTR ERVK 0 1023 1 6 1019 22 70 0 0 chr5 56941671 56941714 -95595545 + AT_rich Low_complexity Low_complexity 1 43 0 6 1019 929 236 188 3 chr5 56941763 56942077 -95595182 + ORR1D1 LTR MaLR 1 372 -2 6 1019 1021 118 0 12 chr5 56942204 56942375 -95594884 + (GGA)n Simple_repeat Simple_repeat 3 171 0 6 1019 478 108 24 0 chr5 56944028 56944111 -95593148 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 1019 542 163 132 1 chr5 56944365 56944485 -95592774 + ORR1B1 LTR MaLR 184 394 0 6 1019 1959 276 69 42 chr5 56944485 56945513 -95591746 + ORR1B1-int LTR MaLR 1 985 -978 6 1019 258 345 87 22 chr5 56945590 56945774 -95591485 - Lx8 LINE L1 -275 7198 7003 6 1019 578 339 17 0 chr5 56946670 56946850 -95590409 + MER2 DNA MER2_type 162 344 -1 6 1019 393 22 0 0 chr5 56946888 56946934 -95590325 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1019 22 56 0 0 chr5 56948872 56948908 -95588351 + AT_rich Low_complexity Low_complexity 1 36 0 6 1019 516 350 103 39 chr5 56949080 56949496 -95587763 - Lx8 LINE L1 -194 7279 6837 6 1019 25 0 0 0 chr5 56949645 56949670 -95587589 + AT_rich Low_complexity Low_complexity 1 25 0 6 1019 1450 187 30 4 chr5 56949884 56950153 -95587106 + Lx3B LINE L1 6690 6965 -8 6 1019 1171 163 86 12 chr5 56950192 56950447 -95586812 - RMER6A LTR ERVK -11 745 472 6 1019 292 273 61 0 chr5 56950574 56950640 -95586619 - PB1D9 SINE Alu -48 72 3 6 1019 376 251 26 38 chr5 56950640 56950740 -95586519 - MT2B LTR ERVL -325 259 173 6 1019 607 157 28 0 chr5 56950717 56950825 -95586434 - RMER6A LTR ERVK -579 111 1 6 1019 339 304 7 26 chr5 56951580 56951732 -95585527 + (CATATA)n Simple_repeat Simple_repeat 2 150 0 6 1019 2351 132 66 5 chr5 56951817 56952213 -95585046 + Lx3_Mus LINE L1 6582 7001 -8 6 1019 596 123 16 24 chr5 56953342 56953467 -95583792 + CT-rich Low_complexity Low_complexity 3 126 0 6 1019 22 103 0 0 chr5 56953677 56953755 -95583504 + AT_rich Low_complexity Low_complexity 1 78 0 6 1019 1133 69 0 0 chr5 56954168 56954313 -95582946 - B1_Mus1 SINE Alu -2 146 2 6 1019 632 304 22 5 chr5 56955582 56955767 -95581492 - MTEb LTR MaLR -31 348 161 6 1019 2047 254 52 31 chr5 56955976 56956552 -95580707 + Lx5 LINE L1 6463 7050 0 6 1019 5630 134 39 2 chr5 56956671 56957586 -95579673 + Lx3_Mus LINE L1 6051 6999 -10 6 1019 711 0 0 0 chr5 56957593 56957672 -95579587 + (GAA)n Simple_repeat Simple_repeat 2 80 0 6 1019 337 153 388 0 chr5 56958558 56958643 -95578616 + PB1D9 SINE Alu 3 120 0 6 1019 334 253 19 138 chr5 56958673 56958792 -95578467 + Lx9 LINE L1 7400 7500 -144 6 1019 234 62 0 0 chr5 56958792 56958824 -95578435 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1019 334 253 19 138 chr5 56958824 56958965 -95578294 + Lx9 LINE L1 7501 7629 -15 6 1019 21 0 0 0 chr5 56958981 56959002 -95578257 + AT_rich Low_complexity Low_complexity 1 21 0 6 1019 521 350 71 102 chr5 56959544 56960132 -95577127 + RLTR18 LTR ERVK 38 607 -9 6 1019 249 242 15 0 chr5 56960382 56960448 -95576811 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 6 1019 608 209 18 0 chr5 56960465 56960575 -95576684 - B1_Mur1 SINE Alu -3 146 35 6 1019 186 306 41 14 chr5 56961181 56961254 -95576005 + L4 LINE RTE 1712 1786 -243 6 1019 365 267 105 104 chr5 56961416 56961966 -95575293 + L1M2 LINE L1 4925 5481 -831 6 1019 670 184 11 40 chr5 56961966 56962141 -95575118 - Lx2B LINE L1 -4 6996 6827 6 1019 365 323 79 39 chr5 56962141 56962414 -95574845 + L1M2 LINE L1 5479 5771 -529 6 1019 248 0 31 0 chr5 56963132 56963164 -95574095 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6 1019 300 53 0 0 chr5 56963165 56963203 -95574056 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6 1019 183 296 125 14 chr5 56963440 56963512 -95573747 + L2 LINE L2 764 843 -2576 6 1019 622 83 42 0 chr5 56963801 56963921 -95573338 + (TA)n Simple_repeat Simple_repeat 2 126 0 6 1019 279 0 0 0 chr5 56963921 56963951 -95573308 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1019 186 133 0 0 chr5 56964623 56964653 -95572606 + (TTA)n Simple_repeat Simple_repeat 2 31 0 6 1019 1300 158 29 0 chr5 56964658 56964904 -95572355 - Lx3B LINE L1 -3 6970 6718 6 1019 387 0 0 0 chr5 56965250 56965293 -95571966 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1019 267 211 239 0 chr5 56965293 56965364 -95571895 + Lx6 LINE L1 6522 6609 -851 6 1019 1112 298 144 54 chr5 56965380 56965754 -95571505 + Lx6 LINE L1 6849 7219 -241 6 1019 438 20 0 0 chr5 56965754 56965805 -95571454 + (TTTTC)n Simple_repeat Simple_repeat 2 52 0 6 1019 1112 298 144 54 chr5 56965805 56965984 -95571275 + Lx6 LINE L1 7220 7451 -9 6 1019 249 384 55 71 chr5 56966088 56966399 -95570860 - MLT1D LTR MaLR -8 497 192 6 1019 37150 46 1 4 chr5 56966399 56972515 -95564744 - L1Md_T LINE L1 -127 6458 268 6 1019 240 333 25 58 chr5 56973867 56973988 -95563271 - Tigger5 DNA MER2_type 0 2406 2290 6 1019 657 38 0 0 chr5 56974393 56974473 -95562786 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 6 1019 21 0 0 0 chr5 56975257 56975278 -95561981 + AT_rich Low_complexity Low_complexity 1 21 0 6 1019 531 0 0 0 chr5 56975350 56975409 -95561850 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1019 606 49 0 0 chr5 56975776 56975858 -95561401 + (GAAA)n Simple_repeat Simple_repeat 1 82 0 6 1019 1056 109 11 6 chr5 56975859 56976035 -95561224 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 6 1019 294 29 0 0 chr5 56976501 56976536 -95560723 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 1019 10797 109 10 8 chr5 56976885 56979263 -95557996 - L1_Mus1 LINE L1 0 6567 4190 6 1019 21 36 0 0 chr5 56979420 56979448 -95557811 + AT_rich Low_complexity Low_complexity 1 28 0 6 1019 1016 348 137 3 chr5 56979564 56980183 -95557076 - Lx8 LINE L1 -149 7324 6623 6 1019 225 0 0 0 chr5 56980191 56980216 -95557043 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1019 738 314 120 3 chr5 56980226 56980542 -95556717 - ORR1D2 LTR MaLR -13 357 5 6 1019 2023 304 99 30 chr5 56980523 56981372 -95555887 - ORR1D2-int LTR MaLR -27 1553 487 6 1019 227 261 66 33 chr5 56981536 56981627 -95555632 - Lx8 LINE L1 -1546 5927 5834 6 1019 337 279 15 55 chr5 56981683 56981895 -95555364 - Lx8 LINE L1 -442 5438 5224 6 1019 515 147 10 0 chr5 56981896 56981998 -95555261 + CT-rich Low_complexity Low_complexity 2 104 0 6 1019 638 305 198 67 chr5 56982001 56982556 -95554703 - MTD-int LTR MaLR -400 858 231 6 1019 261 0 0 0 chr5 56982868 56982897 -95554362 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1019 314 280 50 112 chr5 56982902 56983063 -95554196 - MTD-int LTR MaLR -1107 151 1 6 1019 447 260 9 9 chr5 56983063 56983197 -95554062 - MTD LTR MaLR -15 404 267 6 1019 1168 248 77 12 chr5 56983197 56983536 -95553723 + ORR1B2 LTR MaLR 3 363 -4 6 1019 265 239 29 15 chr5 56983596 56983664 -95553595 - MTD LTR MaLR -299 120 52 6 1019 22 0 0 0 chr5 56984047 56984069 -95553190 + AT_rich Low_complexity Low_complexity 1 22 0 6 1019 32 103 0 0 chr5 56984624 56984740 -95552519 + AT_rich Low_complexity Low_complexity 1 116 0 6 1019 22 35 0 0 chr5 56984960 56984989 -95552270 + AT_rich Low_complexity Low_complexity 1 29 0 6 1019 392 60 0 0 chr5 56985248 56985298 -95551961 - Lx LINE L1 -953 5701 5652 6 1019 6923 55 3 0 chr5 56985298 56986167 -95551092 + L1Md_F2 LINE L1 5699 6570 -12 6 1019 1069 125 42 47 chr5 56986182 56986375 -95550884 + B2_Mm2 SINE B2 2 193 -2 6 1019 1193 188 22 0 chr5 56986876 56987099 -95550160 + Lx5 LINE L1 6201 6428 -622 6 1019 29 28 0 0 chr5 56987152 56987188 -95550071 + AT_rich Low_complexity Low_complexity 1 36 0 6 1019 411 21 0 0 chr5 56987215 56987263 -95549996 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1019 467 400 0 0 chr5 56987269 56987424 -95549835 - B3 SINE B2 -54 162 8 6 1019 578 204 97 0 chr5 56987702 56987815 -95549444 - B1_Mur1 SINE Alu -15 134 11 6 1019 2899 100 2 0 chr5 56987815 56988224 -95549035 + L1_Mus1 LINE L1 6157 6566 -1 6 1019 640 245 0 59 chr5 56988550 56988702 -95548557 + B1_Mus1 SINE Alu 6 148 0 6 1019 355 351 45 8 chr5 56988884 56989016 -95548243 + RSINE1 SINE B4 3 139 -26 6 1019 390 94 0 0 chr5 56989305 56989369 -95547890 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1019 290 300 0 29 chr5 56989382 56989485 -95547774 - MLT1B LTR MaLR -210 180 81 6 1019 485 32 16 0 chr5 56990240 56990303 -95546956 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 6 1019 27 0 0 0 chr5 56990815 56990842 -95546417 + AT_rich Low_complexity Low_complexity 1 27 0 6 1019 773 298 34 10 chr5 56990843 56990865 -95546394 - B3 SINE B2 0 216 189 6 1019 204 40 0 0 chr5 56990865 56990890 -95546369 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1019 324 0 0 0 chr5 56990890 56990926 -95546333 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1019 773 298 34 10 chr5 56990926 56991109 -95546150 - B3 SINE B2 -28 188 6 6 1019 1194 280 33 20 chr5 56991146 56991635 -95545624 + L1_Rod LINE L1 2914 3408 -2439 7 1019 239 256 109 134 chr5 56991778 56991972 -95545287 + L1_Rod LINE L1 3367 3557 -2290 7 1019 986 122 7 0 chr5 56991972 56992119 -95545140 - B1_Mus1 SINE Alu 0 148 1 7 1019 350 268 76 24 chr5 56992119 56992326 -95544933 + L1M4 LINE L1 3541 3785 -2361 7 1019 508 266 25 46 chr5 56992328 56992525 -95544734 + L1_Rod LINE L1 4083 4275 -1572 7 1019 369 0 0 0 chr5 56994077 56994118 -95543141 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1019 302 157 0 0 chr5 56994127 56994197 -95543062 - Lx9 LINE L1 -29 7615 7546 7 1019 1145 101 11 0 chr5 56994209 56994387 -95542872 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1019 300 111 0 0 chr5 56994389 56994434 -95542825 + (TCC)n Simple_repeat Simple_repeat 1 45 0 7 1019 2597 252 88 24 chr5 56994439 56995259 -95542000 - Lx9 LINE L1 -37 7607 6736 7 1019 39 22 0 0 chr5 56996046 56996092 -95541167 + AT_rich Low_complexity Low_complexity 1 46 0 7 1019 396 116 23 11 chr5 56996191 56996278 -95540981 + (TA)n Simple_repeat Simple_repeat 2 89 0 7 1019 208 253 26 13 chr5 56996287 56996363 -95540896 + (TATG)n Simple_repeat Simple_repeat 4 80 0 7 1019 281 368 70 4 chr5 56996364 56996596 -95540663 - Lx8 LINE L1 -190 7454 7080 7 1019 28 29 0 0 chr5 56997527 56997562 -95539697 + AT_rich Low_complexity Low_complexity 1 35 0 7 1019 2635 149 18 13 chr5 56998098 56998554 -95538705 - Lx LINE L1 -9 6645 6188 7 1019 23 33 0 0 chr5 56998554 56998584 -95538675 + AT_rich Low_complexity Low_complexity 1 30 0 7 1019 5881 59 1 14 chr5 56999070 56999845 -95537414 - L1Md_F2 LINE L1 -3 6579 5815 7 1019 25 0 0 0 chr5 57000033 57000058 -95537201 + AT_rich Low_complexity Low_complexity 1 25 0 1 1019 4361 140 18 12 chr5 57000185 57000907 -95536352 - Lx3B LINE L1 -49 6924 6199 2 1019 1988 241 27 25 chr5 57000992 57001481 -95535778 - Lx5 LINE L1 0 7050 6561 3 1019 4462 180 77 14 chr5 57001474 57002968 -95534291 + Lx4A LINE L1 5389 7055 -3 4 1019 39 0 0 0 chr5 57002968 57003007 -95534252 + AT_rich Low_complexity Low_complexity 1 39 0 5 1019 29 0 0 0 chr5 57005122 57005151 -95532108 + AT_rich Low_complexity Low_complexity 1 29 0 6 1019 648 259 95 21 chr5 57006862 57007146 -95530113 - Lx7 LINE L1 -2 7694 7390 7 1019 234 0 0 0 chr5 57007157 57007183 -95530076 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 8 1019 243 0 0 0 chr5 57007186 57007213 -95530046 + (TA)n Simple_repeat Simple_repeat 1 27 0 9 1019 443 154 33 11 chr5 57007253 57007345 -95529914 - L1_Mur3 LINE L1 -3145 2735 2642 1 1019 1627 208 52 26 chr5 57007425 57008196 -95529063 - RMER6A LTR ERVK -25 731 1 1 1019 24 67 0 0 chr5 57008676 57008721 -95528538 + AT_rich Low_complexity Low_complexity 1 45 0 1 1019 21 0 0 0 chr5 57009255 57009276 -95527983 + AT_rich Low_complexity Low_complexity 1 21 0 1 1019 24 32 0 0 chr5 57009807 57009838 -95527421 + AT_rich Low_complexity Low_complexity 1 31 0 1 1019 3340 83 4 2 chr5 57010937 57011395 -95525864 + L1_Mus1 LINE L1 6107 6565 -2 1 1019 239 296 0 43 chr5 57011418 57011510 -95525749 + (CATATA)n Simple_repeat Simple_repeat 4 91 0 1 1019 253 271 0 0 chr5 57011526 57011585 -95525674 - Lx9 LINE L1 -933 6711 6653 1 1019 24 0 0 0 chr5 57011592 57011616 -95525643 + AT_rich Low_complexity Low_complexity 1 24 0 1 1019 1867 240 31 52 chr5 57011697 57012277 -95524982 - Lx2B LINE L1 -555 6445 5878 1 1019 5281 136 37 11 chr5 57012300 57013239 -95524020 + Lx3_Mus LINE L1 6045 7008 -1 2 1019 228 250 0 0 chr5 57013256 57013316 -95523943 + A-rich Low_complexity Low_complexity 1 60 0 2 1019 269 132 0 36 chr5 57013316 57013371 -95523888 + Lx9 LINE L1 5246 5298 -579 2 1019 6617 159 8 12 chr5 57013363 57013632 -95523627 - L1_Mm LINE L1 -680 5203 4939 2 1019 3477 22 0 0 chr5 57013632 57014037 -95523222 + L1Md_A LINE L1 6177 6581 -1 2 1019 6617 159 8 12 chr5 57014037 57014946 -95522313 - L1_Mm LINE L1 -945 4938 4030 2 1019 2211 180 31 8 chr5 57014939 57015390 -95521869 + Lx9 LINE L1 5403 5865 -1779 2 1019 461 296 20 0 chr5 57015410 57015562 -95521697 + Lx9 LINE L1 7261 7415 -229 2 1019 297 0 0 0 chr5 57015565 57015598 -95521661 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1019 376 336 64 56 chr5 57015708 57015957 -95521302 + RLTR18 LTR ERVK 31 281 -335 2 1019 24 0 0 0 chr5 57016003 57016027 -95521232 + AT_rich Low_complexity Low_complexity 1 24 0 2 1020 349 308 116 8 chr5 57016365 57016486 -95520773 + B1_Mur1 SINE Alu 8 141 -8 2 1020 3532 156 5 7 chr5 57016991 57017591 -95519668 + MT2B LTR ERVL 3 601 0 2 1020 480 239 159 41 chr5 57018073 57018243 -95519016 - MIR SINE MIR -6 256 67 3 1020 1253 214 14 14 chr5 57018438 57018713 -95518546 - L1_Mur3 LINE L1 -3155 2725 2451 3 1020 1439 247 33 36 chr5 57018742 57019132 -95518127 + Lx5 LINE L1 6659 7047 -3 3 1020 195 129 0 0 chr5 57019505 57019536 -95517723 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1020 2019 194 34 22 chr5 57019536 57019865 -95517394 - L1_Mur3 LINE L1 -3472 2408 2073 3 1020 528 56 0 0 chr5 57019865 57019937 -95517322 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1020 2019 194 34 22 chr5 57019937 57020102 -95517157 - L1_Mur3 LINE L1 -3808 2072 1908 3 1020 644 310 0 0 chr5 57020328 57020512 -95516747 + Lx6 LINE L1 7013 7196 -264 3 1020 3020 184 36 27 chr5 57020512 57021142 -95516117 + Lx2B LINE L1 6358 6993 -7 3 1020 1296 254 86 20 chr5 57021286 57021636 -95515623 - Lx5 LINE L1 -39 7011 6639 3 1020 435 19 0 0 chr5 57022228 57022280 -95514979 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 3 1020 394 252 29 7 chr5 57022284 57022424 -95514835 + Lx9 LINE L1 7502 7644 0 3 1020 1203 265 99 2 chr5 57022674 57023117 -95514142 - Lx9 LINE L1 -6 7638 7153 4 1020 21 36 0 0 chr5 57023812 57023840 -95513419 + AT_rich Low_complexity Low_complexity 1 28 0 4 1020 195 162 0 0 chr5 57023858 57023895 -95513364 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 1020 241 303 0 0 chr5 57024210 57024299 -95512960 + GA-rich Low_complexity Low_complexity 2 90 0 4 1020 320 210 12 0 chr5 57024317 57024398 -95512861 + GA-rich Low_complexity Low_complexity 3 84 0 4 1020 1480 0 0 23 chr5 57024398 57024663 -95512596 + (GGGAGA)n Simple_repeat Simple_repeat 1 258 0 4 1020 4600 139 33 79 chr5 57024678 57025624 -95511635 + RLTR13D6 LTR ERVK 1 902 0 4 1020 276 30 0 0 chr5 57025646 57025679 -95511580 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1020 1242 142 15 5 chr5 57025679 57025877 -95511382 - LTRIS2 LTR ERV1 -364 200 1 4 1020 883 200 74 5 chr5 57025878 57026094 -95511165 - MuRRS4-int LTR ERV1 -42 5021 4791 4 1020 4742 129 28 14 chr5 57026455 57027217 -95510042 - RMER16-int LTR ERVK -3962 1444 673 4 1020 897 131 106 12 chr5 57027203 57027373 -95509886 - RMER16-int LTR ERVK -5080 326 141 4 1020 273 145 0 0 chr5 57027801 57027863 -95509396 + (A)n Simple_repeat Simple_repeat 1 62 0 5 1020 3311 100 102 17 chr5 57027982 57028502 -95508757 - LTRIS2 LTR ERV1 0 564 1 5 1020 252 0 0 0 chr5 57028891 57028919 -95508340 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1020 456 19 0 0 chr5 57028919 57028971 -95508288 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1020 253 273 0 0 chr5 57029659 57029714 -95507545 + B1F SINE Alu 37 91 -58 5 1020 180 0 0 0 chr5 57029718 57029738 -95507521 + (CCA)n Simple_repeat Simple_repeat 1 20 0 5 1020 220 146 24 0 chr5 57030003 57030044 -95507215 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 5 1020 1036 90 7 0 chr5 57030045 57030190 -95507069 - B1_Mm SINE Alu -1 146 1 5 1020 27 29 0 0 chr5 57031088 57031122 -95506137 + AT_rich Low_complexity Low_complexity 1 34 0 5 1020 27 29 0 0 chr5 57031637 57031671 -95505588 + AT_rich Low_complexity Low_complexity 1 34 0 5 1020 1075 148 17 1 chr5 57031672 57031875 -95505384 + Lx3B LINE L1 5900 6104 -946 6 1020 2878 87 25 117 chr5 57031876 57032434 -95504825 - L1_Mur1 LINE L1 -868 5018 4512 6 1020 634 252 21 0 chr5 57032430 57032573 -95504686 + Lx3B LINE L1 6827 6972 -1 6 1020 23 54 0 0 chr5 57032588 57032625 -95504634 + AT_rich Low_complexity Low_complexity 1 37 0 6 1020 26 30 0 0 chr5 57032859 57032892 -95504367 + AT_rich Low_complexity Low_complexity 1 33 0 6 1020 4292 195 41 26 chr5 57032993 57033925 -95503334 - Lx2B LINE L1 0 7000 6055 6 1020 531 316 52 16 chr5 57035275 57035468 -95501791 + B3 SINE B2 7 206 -10 6 1020 30 45 0 0 chr5 57035620 57035664 -95501595 + AT_rich Low_complexity Low_complexity 1 44 0 6 1020 827 334 38 13 chr5 57035908 57036281 -95500978 - Lx9 LINE L1 -764 6880 6499 6 1020 857 284 41 95 chr5 57036277 57037025 -95500234 + Lx9 LINE L1 4114 4821 -1026 6 1020 427 207 45 140 chr5 57037025 57037182 -95500077 + MT2B LTR ERVL 123 264 -337 6 1020 1015 50 7 21 chr5 57037078 57037208 -95500051 + B1_Mus1 SINE Alu 9 139 -9 7 1020 244 48 23 23 chr5 57037208 57037251 -95500008 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1020 1015 50 7 21 chr5 57037251 57037262 -95499997 + B1_Mus1 SINE Alu 140 148 0 7 1020 1884 245 72 86 chr5 57037272 57038553 -95498706 + Lx9 LINE L1 4861 6256 -1388 6 1020 364 296 73 88 chr5 57038665 57039022 -95498237 + Lx9 LINE L1 6263 6754 -890 6 1020 859 65 16 0 chr5 57039378 57039501 -95497758 + (TC)n Simple_repeat Simple_repeat 2 126 0 7 1020 261 0 0 0 chr5 57041139 57041168 -95496091 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1020 21 0 0 0 chr5 57041926 57041947 -95495312 + AT_rich Low_complexity Low_complexity 1 21 0 7 1020 317 309 12 23 chr5 57044918 57045090 -95492169 + (TA)n Simple_repeat Simple_repeat 1 170 0 7 1020 24 100 0 0 chr5 57045318 57045398 -95491861 + AT_rich Low_complexity Low_complexity 1 80 0 7 1020 241 169 16 63 chr5 57045504 57045567 -95491692 + Lx9 LINE L1 7541 7600 -44 7 1020 291 276 59 30 chr5 57045613 57045714 -95491545 - MTC LTR MaLR -292 104 1 7 1020 1382 287 65 14 chr5 57046946 57047455 -95489804 - Lx6 LINE L1 -4 7456 6922 7 1020 267 225 113 0 chr5 57047465 57047536 -95489723 - Lx7 LINE L1 -797 6899 6821 8 1020 470 287 124 22 chr5 57047539 57047724 -95489535 + B3 SINE B2 7 210 -6 8 1020 228 111 0 0 chr5 57047840 57047876 -95489383 + RMER6A LTR ERVK 721 756 0 8 1020 194 164 0 18 chr5 57047972 57048028 -95489231 + (TA)n Simple_repeat Simple_repeat 1 55 0 8 1020 525 32 0 0 chr5 57048055 57048118 -95489141 + (GAAA)n Simple_repeat Simple_repeat 4 66 0 8 1020 691 351 102 9 chr5 57048230 57048681 -95488578 + Lx8 LINE L1 6258 6750 -723 8 1020 664 346 104 34 chr5 57048678 57049190 -95488069 + Lx8 LINE L1 6890 7444 -29 8 1020 1142 36 0 0 chr5 57049190 57049327 -95487932 + B1_Mm SINE Alu 1 137 -10 8 1020 225 65 0 0 chr5 57049327 57049358 -95487901 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1020 664 346 104 34 chr5 57049358 57049373 -95487886 + Lx8 LINE L1 7445 7454 -19 8 1020 33 0 0 0 chr5 57049378 57049411 -95487848 + AT_rich Low_complexity Low_complexity 1 33 0 8 1020 27 62 0 0 chr5 57049874 57049922 -95487337 + AT_rich Low_complexity Low_complexity 1 48 0 8 1020 226 174 0 0 chr5 57050217 57050263 -95486996 - MT2A LTR ERVL -3 530 485 9 1020 1618 91 9 0 chr5 57050274 57050495 -95486764 - L1_Mus1 LINE L1 -173 6394 6172 9 1020 1161 71 0 40 chr5 57050495 57050672 -95486587 + L1_Mus1 LINE L1 6398 6567 0 9 1020 1133 100 0 6 chr5 57050673 57050844 -95486415 + (GGAA)n Simple_repeat Simple_repeat 3 172 0 9 1020 890 277 34 17 chr5 57051032 57051267 -95485992 - MT2A LTR ERVL -292 241 3 9 1020 32 0 0 0 chr5 57051922 57051954 -95485305 + AT_rich Low_complexity Low_complexity 1 32 0 9 1020 252 157 25 50 chr5 57052000 57052121 -95485138 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 9 1020 296 186 17 17 chr5 57052154 57052269 -95484990 + (TA)n Simple_repeat Simple_repeat 1 115 0 9 1020 27 29 0 0 chr5 57052398 57052432 -95484827 + AT_rich Low_complexity Low_complexity 1 34 0 9 1020 390 147 0 0 chr5 57052769 57052837 -95484422 + (TTTA)n Simple_repeat Simple_repeat 1 68 0 9 1020 400 247 48 115 chr5 57052837 57053002 -95484257 - Lx5 LINE L1 0 7050 6897 9 1020 5143 214 38 36 chr5 57053012 57055119 -95482140 - Lx5 LINE L1 -269 6781 4683 9 1020 405 374 10 24 chr5 57055120 57055328 -95481931 - Lx9 LINE L1 -813 6831 6627 1 1020 22 0 0 0 chr5 57056215 57056237 -95481022 + AT_rich Low_complexity Low_complexity 1 22 0 1 1020 1150 189 14 0 chr5 57056995 57057217 -95480042 - URR1A DNA MER1_type 0 226 2 1 1020 485 16 16 0 chr5 57057265 57057327 -95479932 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 1 1020 320 320 128 48 chr5 57058597 57058784 -95478475 + B3A SINE B2 2 203 -13 1 1020 24 53 0 0 chr5 57059213 57059251 -95478008 + AT_rich Low_complexity Low_complexity 1 38 0 1 1020 1655 175 24 30 chr5 57059322 57059652 -95477607 - ORR1A4 LTR MaLR -1 328 1 1 1020 490 0 0 0 chr5 57059781 57059837 -95477422 - MTB LTR MaLR 0 400 345 1 1020 791 11 0 0 chr5 57059831 57059923 -95477336 - MTA_Mm LTR MaLR -304 92 1 1 1020 9579 13 3 0 chr5 57059923 57061018 -95476241 - MTA_Mm-int LTR MaLR 0 1098 1 1 1020 490 0 0 0 chr5 57061018 57061074 -95476185 - MTA_Mm LTR MaLR 0 400 345 1 1020 791 11 0 0 chr5 57061068 57061160 -95476099 - MTA_Mm LTR MaLR -304 92 1 1 1020 299 282 41 97 chr5 57061305 57061501 -95475758 + Lx7 LINE L1 7512 7696 0 1 1020 410 303 98 57 chr5 57061680 57062016 -95475243 - Lx7 LINE L1 -1683 6013 5664 1 1020 33 43 0 0 chr5 57062022 57062069 -95475190 + AT_rich Low_complexity Low_complexity 1 47 0 1 1020 228 290 99 0 chr5 57062136 57062267 -95474992 - Lx9 LINE L1 -6 7638 7495 1 1020 22 0 0 0 chr5 57062284 57062306 -95474953 + AT_rich Low_complexity Low_complexity 1 22 0 1 1020 353 324 119 59 chr5 57062308 57062561 -95474698 - Lx8 LINE L1 -9 7464 7197 1 1020 773 262 71 9 chr5 57062596 57062808 -95474451 + MERVK26-int LTR ERVK 6217 6441 -478 1 1020 614 287 30 18 chr5 57063062 57063229 -95474030 + MERVK26-int LTR ERVK 6750 6918 -1 1 1020 2658 196 87 16 chr5 57063233 57063808 -95473451 + RMER20B LTR ERVK 1 616 -11 1 1020 308 346 53 49 chr5 57063858 57064104 -95473155 - Lx8 LINE L1 -358 7115 6869 1 1020 637 316 41 25 chr5 57064389 57064632 -95472627 - Lx8 LINE L1 -972 6501 6255 1 1020 31 26 0 0 chr5 57065007 57065045 -95472214 + AT_rich Low_complexity Low_complexity 1 38 0 1 1020 248 393 9 18 chr5 57065357 57065471 -95471788 + MLT1E1A LTR MaLR 18 130 -550 1 1020 369 0 0 0 chr5 57065814 57065855 -95471404 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1020 264 330 0 0 chr5 57066752 57066846 -95470413 + Lx7 LINE L1 5039 5132 -748 1 1020 1191 204 23 23 chr5 57066865 57067131 -95470128 + RMER6C LTR ERVK 418 683 -7 1 1020 485 326 71 37 chr5 57067162 57067487 -95469772 + Lx7 LINE L1 5972 6307 -1389 1 1020 22 0 0 0 chr5 57067528 57067550 -95469709 + AT_rich Low_complexity Low_complexity 1 22 0 1 1020 7603 80 7 5 chr5 57067558 57068792 -95468467 - Lx3_Mus LINE L1 -941 6068 4835 1 1020 1282 139 51 21 chr5 57068792 57069027 -95468232 + Lx3_Mus LINE L1 6767 7008 -1 1 1020 534 79 0 0 chr5 57069092 57069168 -95468091 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1020 250 276 50 50 chr5 57069284 57069364 -95467895 + B1F SINE Alu 70 149 0 1 1020 387 0 0 0 chr5 57070028 57070071 -95467188 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1020 341 235 40 30 chr5 57070724 57070825 -95466434 + L1M3 LINE L1 4893 4994 -1146 1 1020 392 337 43 32 chr5 57070817 57071096 -95466163 + L1MA9 LINE L1 5874 6155 -157 1 1020 1557 122 127 10 chr5 57071294 57071593 -95465666 + RLTR9E LTR ERVK 76 409 0 1 1020 1882 250 50 54 chr5 57071921 57072555 -95464704 + L1_Mur3 LINE L1 233 864 -6848 1 1020 447 19 0 0 chr5 57072555 57072607 -95464652 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1020 1144 230 79 3 chr5 57072622 57072914 -95464345 + ORR1C1 LTR MaLR 45 358 -20 1 1020 1661 274 65 39 chr5 57072916 57073512 -95463747 + Lx7 LINE L1 6673 7284 -412 1 1020 456 122 0 0 chr5 57073542 57073624 -95463635 + (TA)n Simple_repeat Simple_repeat 1 82 0 1 1020 191 146 24 0 chr5 57074283 57074324 -95462935 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1020 1072 266 204 44 chr5 57074776 57075251 -95462008 - RMER15 LTR ERVL -24 551 1 1 1020 23 0 0 0 chr5 57075390 57075413 -95461846 + AT_rich Low_complexity Low_complexity 1 23 0 1 1020 1036 51 56 28 chr5 57075604 57075746 -95461513 - B1_Mm SINE Alu 0 147 2 1 1020 210 91 0 0 chr5 57076092 57076125 -95461134 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1020 441 0 0 0 chr5 57076125 57076173 -95461086 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1020 487 340 5 30 chr5 57076388 57076588 -95460671 - B3A SINE B2 0 198 4 1 1020 328 229 74 0 chr5 57076887 57077009 -95460250 - Lx3B LINE L1 -5 6968 6838 1 1020 1094 261 73 13 chr5 57078291 57078594 -95458665 - RMER19C LTR ERVK 0 611 291 1 1020 290 107 18 0 chr5 57078667 57078723 -95458536 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1020 256 171 65 13 chr5 57078880 57078957 -95458302 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 1 1020 690 105 0 0 chr5 57078983 57079097 -95458162 + (TG)n Simple_repeat Simple_repeat 2 115 0 1 1020 1276 350 40 23 chr5 57079172 57079826 -95457433 + Lx8 LINE L1 6529 7193 -280 1 1020 34 42 0 0 chr5 57081456 57081504 -95455755 + AT_rich Low_complexity Low_complexity 1 48 0 1 1020 1356 316 21 17 chr5 57081627 57082145 -95455114 - Lx7 LINE L1 -338 7358 6839 1 1020 22 80 0 0 chr5 57083723 57083773 -95453486 + AT_rich Low_complexity Low_complexity 1 50 0 1 1020 445 264 18 9 chr5 57083861 57083972 -95453287 + Lx8 LINE L1 7176 7287 -186 1 1020 510 17 0 0 chr5 57083972 57084031 -95453228 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 1 1020 249 239 42 32 chr5 57084209 57084304 -95452955 - L1MC LINE L1 -609 5735 5640 1 1020 297 307 118 15 chr5 57084404 57084599 -95452660 - L1MB1 LINE L1 -280 5909 5695 1 1020 262 146 61 0 chr5 57085371 57085453 -95451806 + CT-rich Low_complexity Low_complexity 2 88 0 1 1020 259 114 0 43 chr5 57085465 57085511 -95451748 + (TCTCTG)n Simple_repeat Simple_repeat 2 45 0 1 1020 336 48 0 0 chr5 57085530 57085572 -95451687 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1020 282 212 0 0 chr5 57085613 57085679 -95451580 - Lx3A LINE L1 0 6981 6916 1 1020 1064 45 0 0 chr5 57085681 57085813 -95451446 + Lx3_Mus LINE L1 5704 5835 -1174 1 1020 313 121 36 0 chr5 57085862 57085929 -95451330 + L1_Mur1 LINE L1 5359 5433 -453 1 1020 1041 103 7 0 chr5 57086050 57086195 -95451064 + B1_Mus1 SINE Alu 3 148 0 1 1020 6109 46 0 0 chr5 57086218 57087069 -95450190 + L1Md_F2 LINE L1 5819 6582 0 1 1020 668 302 104 34 chr5 57087229 57087527 -95449732 - Lx6 LINE L1 -27 7433 7115 1 1020 1182 182 38 139 chr5 57087523 57087975 -95449284 + L1_Mur2 LINE L1 2918 3323 -2557 1 1020 2623 17 0 0 chr5 57087975 57088275 -95448984 + L1Md_T LINE L1 5287 5586 -297 1 1020 8070 52 0 0 chr5 57088275 57089271 -95447988 + L1Md_T LINE L1 5587 6582 0 1 1020 5791 201 29 36 chr5 57089277 57090524 -95446735 + L1_Mur2 LINE L1 3332 4583 -1294 1 1020 6041 57 4 4 chr5 57090524 57091295 -95445964 - L1Md_F2 LINE L1 0 6582 5812 1 1020 5791 201 29 36 chr5 57091295 57091517 -95445742 + L1_Mur2 LINE L1 4584 4791 -1086 1 1020 5303 68 0 4 chr5 57091578 57092273 -95444986 + L1_Mus1 LINE L1 5876 6567 0 1 1020 22 56 0 0 chr5 57093570 57093606 -95443653 + AT_rich Low_complexity Low_complexity 1 36 0 1 1020 230 0 33 0 chr5 57094089 57094119 -95443140 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1020 544 295 56 28 chr5 57094165 57094343 -95442916 - B4A SINE B4 -2 290 108 1 1020 276 215 38 0 chr5 57094356 57094435 -95442824 - Lx5 LINE L1 -11 7039 6958 1 1020 602 246 0 44 chr5 57094449 57094585 -95442674 - Lx5 LINE L1 -216 6834 6705 1 1020 21 0 0 0 chr5 57094693 57094714 -95442545 + AT_rich Low_complexity Low_complexity 1 21 0 1 1020 571 354 18 44 chr5 57094889 57095050 -95442209 - Lx9 LINE L1 -175 7469 7306 1 1020 2272 109 33 43 chr5 57095050 57095443 -95441816 + L1_Mus3 LINE L1 6243 6631 -7 1 1020 571 354 18 44 chr5 57095443 57095668 -95441591 - Lx9 LINE L1 -339 7305 7093 1 1020 216 200 0 0 chr5 57096060 57096105 -95441154 + CT-rich Low_complexity Low_complexity 5 49 0 1 1020 954 140 0 0 chr5 57096106 57096285 -95440974 + (TC)n Simple_repeat Simple_repeat 1 179 0 1 1020 222 91 0 0 chr5 57096285 57096317 -95440942 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1020 618 337 50 50 chr5 57096339 57096601 -95440658 - B4 SINE B4 -26 266 5 1 1020 217 176 0 19 chr5 57096614 57096666 -95440593 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 1 1020 235 250 28 0 chr5 57097333 57097405 -95439854 - Lx3C LINE L1 -2 6974 6901 1 1020 8958 116 24 6 chr5 57097567 57099018 -95438241 - Lx3_Mus LINE L1 0 7009 5536 1 1020 183 80 0 0 chr5 57099334 57099359 -95437900 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1 1020 251 378 0 0 chr5 57100947 57101037 -95436222 - Lx8 LINE L1 -140 7333 7244 1 1020 1041 333 28 25 chr5 57101056 57101586 -95435673 - Lx8 LINE L1 -283 7190 6659 1 1020 239 298 0 0 chr5 57101643 57101700 -95435559 - Lx8 LINE L1 -979 6494 6438 1 1020 586 318 94 74 chr5 57102387 57102846 -95434413 + RMER13A LTR ERVK 21 488 -372 1 1020 438 282 45 11 chr5 57103081 57103257 -95434002 - Lx8 LINE L1 -322 7151 6970 1 1020 22 35 0 0 chr5 57103853 57103882 -95433377 + AT_rich Low_complexity Low_complexity 1 29 0 1 1020 412 299 27 62 chr5 57104933 57105079 -95432180 - RSINE1 SINE B4 0 165 25 1 1020 25 0 0 0 chr5 57105320 57105345 -95431914 + AT_rich Low_complexity Low_complexity 1 25 0 1 1020 914 122 1 34 chr5 57106463 57106625 -95430634 - L1_Mus1 LINE L1 -485 5755 5587 1 1020 585 0 0 0 chr5 57106627 57106692 -95430567 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1020 5025 140 5 1 chr5 57106692 57107509 -95429750 - L1_Mus1 LINE L1 -649 5234 4415 1 1020 4738 126 9 8 chr5 57107511 57108253 -95429006 + L1_Mus3 LINE L1 5896 6638 0 1 1020 257 0 30 0 chr5 57109090 57109123 -95428136 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1020 31 26 0 0 chr5 57111002 57111040 -95426219 + AT_rich Low_complexity Low_complexity 1 38 0 1 1020 598 340 15 5 chr5 57113028 57113223 -95424036 + B4 SINE B4 4 200 -92 1 1020 664 217 8 0 chr5 57113243 57113372 -95423887 + B3 SINE B2 1 130 -86 1 1020 195 42 0 0 chr5 57113407 57113431 -95423828 + (TAAAA)n Simple_repeat Simple_repeat 5 28 0 1 1020 1290 206 77 12 chr5 57113929 57114588 -95422671 + L1VL4 LINE L1 682 1637 -4249 1 1020 3166 193 16 2 chr5 57114555 57115192 -95422067 + L1VL4 LINE L1 3718 4363 -1514 1 1020 2293 68 3 0 chr5 57115192 57115499 -95421760 + L1_Mus1 LINE L1 6258 6565 -2 1 1020 991 129 0 0 chr5 57117172 57117312 -95419947 + B1_Mus1 SINE Alu 1 140 -8 1 1020 216 24 73 0 chr5 57117314 57117355 -95419904 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 1020 22 35 0 0 chr5 57118740 57118769 -95418490 + AT_rich Low_complexity Low_complexity 1 29 0 2 1020 506 331 66 76 chr5 57119286 57119587 -95417672 - MTEa LTR MaLR -26 353 56 2 1020 23396 133 31 21 chr5 57119855 57124387 -95412872 + L1Md_F LINE L1 556 5132 -751 2 1020 5419 82 10 26 chr5 57124389 57125164 -95412095 + L1_Mus2 LINE L1 5804 6566 0 2 1020 817 284 45 0 chr5 57125175 57125376 -95411883 + B3 SINE B2 1 210 -6 2 1020 25 65 0 0 chr5 57125453 57125499 -95411760 + AT_rich Low_complexity Low_complexity 1 46 0 2 1020 534 241 9 0 chr5 57125513 57125629 -95411630 - B3 SINE B2 -99 117 1 2 1020 35 0 0 0 chr5 57125837 57125872 -95411387 + AT_rich Low_complexity Low_complexity 1 35 0 2 1020 183 114 0 0 chr5 57126544 57126579 -95410680 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1020 326 242 28 120 chr5 57126671 57126887 -95410372 - L1_Rod LINE L1 -3923 1924 1729 2 1020 2083 281 62 30 chr5 57127838 57128827 -95408432 + RMER1A Other Other 26 736 -294 2 1020 180 152 0 0 chr5 57128916 57128949 -95408310 + T-rich Low_complexity Low_complexity 1 33 0 2 1020 249 297 0 0 chr5 57129114 57129178 -95408081 + CT-rich Low_complexity Low_complexity 3 66 0 2 1020 192 304 88 18 chr5 57130874 57130988 -95406271 - L3 LINE CR1 -230 4259 4138 2 1020 1159 55 0 7 chr5 57131351 57131499 -95405760 - B1_Mus2 SINE Alu 0 147 1 2 1020 21 0 0 0 chr5 57131957 57131978 -95405281 + AT_rich Low_complexity Low_complexity 1 21 0 2 1020 275 340 35 40 chr5 57132221 57132420 -95404839 - B3A SINE B2 0 198 1 2 1020 22 35 0 0 chr5 57132957 57132986 -95404273 + AT_rich Low_complexity Low_complexity 1 29 0 2 1020 296 280 0 0 chr5 57133121 57133196 -95404063 + MLT1E3 LTR MaLR 84 158 -522 2 1020 324 368 75 35 chr5 57133282 57133589 -95403670 + MLT1E3 LTR MaLR 337 640 -14 2 1020 22 0 0 0 chr5 57134002 57134024 -95403235 + AT_rich Low_complexity Low_complexity 1 22 0 2 1020 22 0 0 0 chr5 57134196 57134218 -95403041 + AT_rich Low_complexity Low_complexity 1 22 0 2 1020 234 0 0 0 chr5 57134248 57134274 -95402985 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1020 23 0 0 0 chr5 57134370 57134393 -95402866 + AT_rich Low_complexity Low_complexity 1 23 0 2 1020 2089 251 73 15 chr5 57136117 57136708 -95400551 - Lx3C LINE L1 -3 6973 6349 2 1020 3559 192 69 42 chr5 57136712 57137872 -95399387 - Lx2B LINE L1 -89 6911 5727 2 1020 912 146 0 0 chr5 57137872 57138009 -95399250 + B1_Mus1 SINE Alu 3 139 -9 2 1020 3559 254 99 62 chr5 57138009 57138204 -95399055 - Lx2B LINE L1 -411 5751 5587 2 1020 2465 70 85 0 chr5 57138500 57138842 -95398417 + L1_Mus1 LINE L1 6188 6558 -9 2 1020 681 232 0 0 chr5 57138842 57138984 -95398275 - Lx2B LINE L1 -310 5573 5432 2 1020 2216 194 13 2 chr5 57138986 57139440 -95397819 + Lx2B LINE L1 4961 5419 -458 2 1020 1105 89 0 0 chr5 57139566 57139712 -95397547 + B1_Mus1 SINE Alu 3 148 0 2 1020 213 154 0 0 chr5 57139712 57139751 -95397508 + A-rich Low_complexity Low_complexity 1 39 0 2 1020 405 0 0 0 chr5 57139997 57140042 -95397217 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1020 714 227 220 33 chr5 57141635 57141757 -95395502 - Lx9 LINE L1 -1 7643 7502 2 1020 255 31 0 0 chr5 57141757 57141789 -95395470 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1020 714 227 220 33 chr5 57141789 57142062 -95395197 - Lx9 LINE L1 -143 7501 7174 2 1020 9063 117 13 9 chr5 57142088 57143696 -95393563 - Lx3_Mus LINE L1 -12 6997 5384 2 1020 1543 259 101 39 chr5 57143697 57144045 -95393214 - Lx9 LINE L1 -882 6762 6399 2 1020 2374 139 24 122 chr5 57144045 57144579 -95392680 - RLTR45 LTR ERVK 0 482 1 2 1020 1543 259 101 39 chr5 57144579 57144816 -95392443 - Lx9 LINE L1 -1246 6398 6141 2 1020 562 328 62 29 chr5 57144957 57145507 -95391752 + L1MA6 LINE L1 5254 5821 -470 2 1020 301 293 141 21 chr5 57145646 57145880 -95391379 + L1MA6 LINE L1 6008 6269 -31 2 1020 21 0 0 0 chr5 57147133 57147154 -95390105 + AT_rich Low_complexity Low_complexity 1 21 0 2 1021 1414 77 66 41 chr5 57147501 57147745 -95389514 + L1_Mus3 LINE L1 6384 6633 -5 2 1021 294 29 0 0 chr5 57147794 57147829 -95389430 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 2 1021 267 183 100 0 chr5 57147829 57147879 -95389380 - B2_Mm1t SINE B2 -33 160 106 2 1021 541 93 0 0 chr5 57147873 57147948 -95389311 - B2_Mm2 SINE B2 -119 76 2 2 1021 1072 148 43 24 chr5 57148016 57148224 -95389035 + Lx2 LINE L1 6786 6997 0 2 1021 534 31 0 0 chr5 57149578 57149642 -95387617 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 2 1021 249 33 0 0 chr5 57150299 57150329 -95386930 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 2 1021 263 215 15 0 chr5 57150343 57150408 -95386851 + (TA)n Simple_repeat Simple_repeat 1 66 0 2 1021 272 27 0 26 chr5 57150417 57150455 -95386804 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2 1021 472 372 40 6 chr5 57150455 57150620 -95386639 - B3A SINE B2 -25 173 2 2 1021 1004 130 0 0 chr5 57151688 57151834 -95385425 - B1_Mus1 SINE Alu -1 147 2 2 1021 369 339 149 41 chr5 57152234 57152255 -95385004 + MLT1E2 LTR MaLR 56 75 -552 2 1021 3187 58 5 0 chr5 57152255 57152649 -95384610 - MTA_Mm LTR MaLR 0 396 1 2 1021 369 339 140 39 chr5 57152649 57153103 -95384156 + MLT1E2 LTR MaLR 76 572 -52 2 1021 3591 87 2 0 chr5 57153251 57153745 -95383514 - L1_Mm LINE L1 -631 5252 4758 2 1021 4888 85 7 9 chr5 57153747 57154448 -95382811 + L1Md_F2 LINE L1 5885 6582 0 2 1021 26 74 0 0 chr5 57154805 57154859 -95382400 + AT_rich Low_complexity Low_complexity 1 54 0 2 1021 593 279 122 38 chr5 57154899 57155137 -95382122 - Lx8 LINE L1 -929 6544 6287 2 1021 284 304 78 49 chr5 57155322 57155464 -95381795 - B1F2 SINE Alu -1 148 3 2 1021 1597 333 78 40 chr5 57156169 57156536 -95380723 + Lx8 LINE L1 6462 6848 -625 2 1021 249 57 0 0 chr5 57156536 57156571 -95380688 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1021 1597 333 78 40 chr5 57156571 57156831 -95380428 + Lx8 LINE L1 6849 7127 -346 2 1021 3231 84 13 26 chr5 57156831 57157283 -95379976 - LTRIS5 LTR ERV1 -1 446 1 2 1021 1597 333 78 40 chr5 57157283 57157627 -95379632 + Lx8 LINE L1 7128 7471 -2 2 1021 4300 138 165 22 chr5 57157681 57158529 -95378730 + RLTR13C1 LTR ERVK 1 969 -14 2 1021 23 33 0 0 chr5 57159053 57159083 -95378176 + AT_rich Low_complexity Low_complexity 1 30 0 2 1021 25 0 0 0 chr5 57160195 57160220 -95377039 + AT_rich Low_complexity Low_complexity 1 25 0 2 1021 1932 316 133 50 chr5 57160867 57162165 -95375094 + L1_Mur3 LINE L1 2134 3462 -2418 2 1021 322 320 56 61 chr5 57162165 57162378 -95374881 + B3 SINE B2 5 216 0 2 1021 1932 316 133 50 chr5 57162378 57163759 -95373500 + L1_Mur3 LINE L1 3463 5035 -845 2 1021 627 64 174 0 chr5 57163774 57163883 -95373376 + L1Md_F3 LINE L1 6455 6582 -2 2 1021 472 305 24 71 chr5 57163890 57164021 -95373238 - RMER15 LTR ERVL -373 202 82 2 1021 3768 70 30 4 chr5 57164021 57164520 -95372739 - RLTR1B LTR ERV1 0 512 1 2 1021 472 305 24 71 chr5 57164520 57164600 -95372659 - RMER15 LTR ERVL -494 81 1 2 1021 359 97 65 0 chr5 57165259 57165321 -95371938 + L1_Mur3 LINE L1 3260 3325 -2555 2 1021 450 227 87 39 chr5 57165344 57165498 -95371761 + Lx6 LINE L1 6080 6243 -807 2 1021 1607 296 34 19 chr5 57165510 57165979 -95371280 + Lx6 LINE L1 6271 6746 -714 2 1021 881 224 51 27 chr5 57168173 57168430 -95368829 - Lx7 LINE L1 0 7696 7434 2 1021 255 61 0 0 chr5 57168460 57168493 -95368766 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1021 340 354 37 0 chr5 57168616 57168777 -95368482 + Lx9 LINE L1 7202 7368 -276 2 1021 24 32 0 0 chr5 57168822 57168853 -95368406 + AT_rich Low_complexity Low_complexity 1 31 0 2 1021 30 27 0 0 chr5 57170144 57170181 -95367078 + AT_rich Low_complexity Low_complexity 1 37 0 2 1021 22 35 0 0 chr5 57171369 57171398 -95365861 + AT_rich Low_complexity Low_complexity 1 29 0 2 1021 270 21 64 0 chr5 57172587 57172634 -95364625 + (TTTTTG)n Simple_repeat Simple_repeat 3 52 0 2 1021 29619 13 2 0 chr5 57172636 57176749 -95360510 - L1Md_A LINE L1 0 6582 2460 2 1021 194 91 30 0 chr5 57177247 57177280 -95359979 + (TC)n Simple_repeat Simple_repeat 2 35 0 2 1021 358 289 56 37 chr5 57177843 57177924 -95359335 - RSINE1 SINE B4 -8 157 75 2 1021 2546 167 67 114 chr5 57177924 57178513 -95358746 + RMER17D LTR ERVK 1 538 -351 2 1021 1128 62 7 0 chr5 57178513 57178659 -95358600 + B1_Mm SINE Alu 1 147 0 2 1021 2546 167 67 114 chr5 57178659 57178881 -95358378 + RMER17D LTR ERVK 539 773 -116 2 1021 341 231 0 0 chr5 57180111 57180176 -95357083 + RSINE1 SINE B4 2 66 -99 2 1021 406 130 0 145 chr5 57180186 57180303 -95356956 - RMER17A LTR ERVK 0 751 652 2 1021 531 0 0 0 chr5 57180591 57180650 -95356609 + (CA)n Simple_repeat Simple_repeat 1 59 0 2 1021 31 26 0 0 chr5 57180851 57180889 -95356370 + AT_rich Low_complexity Low_complexity 1 38 0 2 1021 21 36 0 0 chr5 57181049 57181077 -95356182 + AT_rich Low_complexity Low_complexity 1 28 0 2 1021 531 250 62 34 chr5 57181122 57181405 -95355854 - MTD LTR MaLR -4 417 13 2 1021 3023 76 7 44 chr5 57182455 57182909 -95354350 + L1_Mus2 LINE L1 6128 6564 -2 2 1021 26 50 0 0 chr5 57182923 57182963 -95354296 + AT_rich Low_complexity Low_complexity 1 40 0 2 1021 1982 125 0 0 chr5 57182996 57183299 -95353960 - L1_Mm LINE L1 -561 5322 5020 2 1021 2866 109 5 2 chr5 57183299 57183722 -95353537 + L1_Mus3 LINE L1 6215 6638 0 2 1021 798 39 0 0 chr5 57185055 57185157 -95352102 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 2 1021 210 191 0 0 chr5 57185358 57185405 -95351854 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2 1021 233 280 123 62 chr5 57185978 57186157 -95351102 + MLT1D LTR MaLR 315 504 -1 2 1021 21 36 0 0 chr5 57186238 57186266 -95350993 + AT_rich Low_complexity Low_complexity 1 28 0 2 1021 437 333 68 43 chr5 57186781 57187016 -95350243 + B4A SINE B4 9 249 -43 2 1021 1238 223 83 52 chr5 57187107 57187514 -95349745 - Lx6 LINE L1 -1359 6101 5682 2 1021 1006 292 30 23 chr5 57187538 57187839 -95349420 + Lx6 LINE L1 6946 7248 -212 2 1021 333 68 0 0 chr5 57187847 57187891 -95349368 + (TAA)n Simple_repeat Simple_repeat 1 44 0 2 1021 227 152 0 21 chr5 57187893 57187940 -95349319 + GA-rich Low_complexity Low_complexity 3 48 0 2 1021 3882 99 4 2 chr5 57188742 57189291 -95347968 + Lx3A LINE L1 6183 6732 -249 2 1021 896 135 0 0 chr5 57189284 57189425 -95347834 + Lx3A LINE L1 5722 5862 -1147 2 1021 4445 125 25 15 chr5 57189426 57190143 -95347116 + Lx3A LINE L1 6258 6981 0 2 1021 361 379 10 15 chr5 57190258 57190459 -95346800 - Lx8 LINE L1 -155 7318 7119 3 1021 744 74 0 0 chr5 57191180 57191288 -95345971 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 3 1021 282 29 0 0 chr5 57191288 57191322 -95345937 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1021 215 152 0 21 chr5 57191782 57191829 -95345430 + T-rich Low_complexity Low_complexity 6 51 0 3 1021 180 158 0 0 chr5 57191956 57191994 -95345265 + T-rich Low_complexity Low_complexity 1 38 0 3 1021 313 22 43 0 chr5 57192768 57192814 -95344445 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 3 1021 845 183 0 16 chr5 57192814 57192997 -95344262 + CT-rich Low_complexity Low_complexity 1 180 0 3 1021 954 102 7 0 chr5 57193004 57193141 -95344118 - B1_Mus2 SINE Alu -8 139 2 3 1021 24 32 0 0 chr5 57193176 57193207 -95344052 + AT_rich Low_complexity Low_complexity 1 31 0 3 1021 50 0 0 0 chr5 57194218 57194268 -95342991 + AT_rich Low_complexity Low_complexity 1 50 0 3 1021 1582 184 91 15 chr5 57194340 57194681 -95342578 - ORR1B2 LTR MaLR 0 367 1 3 1021 376 337 60 97 chr5 57194958 57195227 -95342032 + RLTR26 LTR ERVK 184 442 -200 3 1021 745 20 10 20 chr5 57195705 57195805 -95341454 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 3 1021 483 277 0 44 chr5 57196777 57196913 -95340346 - Lx7 LINE L1 -901 6795 6666 3 1021 477 0 0 0 chr5 57197681 57197734 -95339525 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1021 23 0 0 0 chr5 57198677 57198700 -95338559 + AT_rich Low_complexity Low_complexity 1 23 0 3 1021 341 160 62 56 chr5 57199504 57199683 -95337576 + (TA)n Simple_repeat Simple_repeat 1 180 0 3 1021 218 157 27 81 chr5 57199721 57199832 -95337427 + (CATATA)n Simple_repeat Simple_repeat 3 107 0 3 1021 489 80 0 0 chr5 57199932 57200007 -95337252 + (GA)n Simple_repeat Simple_repeat 2 76 0 3 1021 626 239 15 0 chr5 57200016 57200150 -95337109 + B1_Mur3 SINE Alu 5 140 -9 3 1021 22 0 0 0 chr5 57202559 57202581 -95334678 + AT_rich Low_complexity Low_complexity 1 22 0 3 1021 423 0 0 0 chr5 57202646 57202693 -95334566 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1021 1010 72 0 28 chr5 57202722 57202864 -95334395 + B1_Mus1 SINE Alu 5 142 -6 3 1021 415 168 42 0 chr5 57202923 57202961 -95334298 - L1_Mur2 LINE L1 -2270 3607 3565 3 1021 3591 135 45 8 chr5 57202961 57203582 -95333677 - Lx LINE L1 -3 6651 6008 3 1021 415 146 34 0 chr5 57203582 57203653 -95333606 - L1_Mur2 LINE L1 -339 3575 3505 3 1021 463 363 51 51 chr5 57203753 57203968 -95333291 - B3A SINE B2 0 216 2 3 1021 241 169 17 17 chr5 57204798 57204858 -95332401 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 1021 28 61 0 0 chr5 57205672 57205721 -95331538 + AT_rich Low_complexity Low_complexity 1 49 0 3 1021 213 169 13 66 chr5 57207000 57207068 -95330191 + T-rich Low_complexity Low_complexity 12 76 0 3 1021 1059 102 0 20 chr5 57207068 57207218 -95330041 - B1_Mm SINE Alu 0 147 1 3 1021 21 82 0 0 chr5 57208423 57208472 -95328787 + AT_rich Low_complexity Low_complexity 1 49 0 3 1021 344 217 0 12 chr5 57208833 57208917 -95328342 + Lx9 LINE L1 7293 7375 -269 3 1021 462 18 0 0 chr5 57208929 57208984 -95328275 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1021 411 21 0 0 chr5 57208984 57209031 -95328228 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1021 5973 108 28 5 chr5 57209739 57210758 -95326501 + L1_Mur1 LINE L1 4777 5865 -21 3 1021 4172 130 28 24 chr5 57210759 57211475 -95325784 + Lx3A LINE L1 6258 6976 -5 3 1021 922 219 154 53 chr5 57211477 57211815 -95325444 - ORR1D1 LTR MaLR 0 374 3 3 1021 213 39 0 0 chr5 57211849 57211875 -95325384 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 3 1021 3233 88 30 13 chr5 57212584 57213046 -95324213 - L1Md_F2 LINE L1 -12 6570 6101 3 1021 9701 73 7 4 chr5 57213063 57214363 -95322896 - L1_Mm LINE L1 0 5883 4580 3 1021 512 291 90 6 chr5 57214518 57214684 -95322575 - B3A SINE B2 -18 180 1 3 1021 1226 254 58 103 chr5 57214924 57215089 -95322170 + RMER6A LTR ERVK 1 177 -513 3 1021 453 36 0 0 chr5 57215089 57215144 -95322115 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3 1021 1889 219 53 44 chr5 57215144 57215776 -95321483 + RMER6A LTR ERVK 178 756 0 3 1021 2205 31 10 62 chr5 57216643 57216952 -95320307 - L1Md_F3 LINE L1 -3 6581 6289 3 1021 375 130 0 0 chr5 57217128 57217205 -95320054 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 1021 1599 240 55 16 chr5 57217739 57218124 -95319135 + MTB_Mm LTR MaLR 3 402 -5 3 1021 325 328 83 68 chr5 57218882 57219134 -95318125 + MER102b DNA MER1_type 11 266 -75 3 1021 4347 120 3 9 chr5 57219787 57220462 -95316797 + Lx3A LINE L1 6296 6966 -15 3 1021 434 18 18 0 chr5 57220462 57220517 -95316742 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 3 1021 435 125 14 0 chr5 57220535 57220607 -95316652 + MYSERV6-int LTR ERVK 1219 1291 -7668 3 1021 392 148 12 58 chr5 57220610 57220696 -95316563 + MYSERV6-int LTR ERVK 4946 5027 -3932 3 1021 3487 199 70 19 chr5 57220759 57221536 -95315723 + MYSERV6-int LTR ERVK 4995 5810 -3149 3 1021 873 277 140 57 chr5 57221536 57221568 -95315691 - RLTR19 LTR ERVK -26 473 448 3 1021 3010 68 2 30 chr5 57221568 57221975 -95315284 - MTA_Mm LTR MaLR 0 396 1 3 1021 873 277 140 57 chr5 57221975 57222229 -95315030 - RLTR19 LTR ERVK -52 447 170 3 1021 402 21 0 0 chr5 57222229 57222276 -95314983 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 1021 878 270 143 59 chr5 57222276 57222425 -95314834 - RLTR19 LTR ERVK -330 169 1 3 1021 707 215 128 11 chr5 57222599 57222778 -95314481 - RLTR19-int LTR ERVK -1756 4381 4182 3 1021 791 244 53 4 chr5 57222778 57223025 -95314234 + Lx6 LINE L1 2324 2582 -3295 3 1021 32478 85 5 20 chr5 57223030 57227734 -95309525 - L1Md_F2 LINE L1 0 6582 1978 3 1021 213 39 0 0 chr5 57227734 57227760 -95309499 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1021 32478 139 12 27 chr5 57227760 57229342 -95307917 - L1Md_F2 LINE L1 -3906 1977 398 3 1021 1362 148 7 45 chr5 57229360 57229629 -95307630 + Lx6 LINE L1 2596 2854 -3026 3 1021 447 176 8 98 chr5 57229637 57229769 -95307490 + Lx6 LINE L1 2977 3096 -2784 3 1021 203 130 43 0 chr5 57230148 57230194 -95307065 + A-rich Low_complexity Low_complexity 2 49 0 3 1021 267 340 70 14 chr5 57230194 57230337 -95306922 - RMER20B LTR ERVK -243 384 234 3 1021 693 208 62 10 chr5 57230539 57230748 -95306511 + Lx6 LINE L1 3105 3324 -2556 3 1021 2841 201 76 115 chr5 57230731 57231611 -95305648 + Lx6 LINE L1 4857 5701 -176 3 1021 957 101 0 0 chr5 57231611 57231750 -95305509 + (GAAA)n Simple_repeat Simple_repeat 1 139 0 3 1021 2841 201 76 115 chr5 57231750 57231788 -95305471 + Lx6 LINE L1 5702 5739 -138 3 1021 21 0 0 0 chr5 57231788 57231809 -95305450 + AT_rich Low_complexity Low_complexity 1 21 0 3 1021 5620 54 1 0 chr5 57231853 57232731 -95304528 - L1Md_F2 LINE L1 -529 6053 5175 3 1021 4645 55 2 5 chr5 57232731 57233318 -95303941 + L1Md_F2 LINE L1 5995 6579 -3 3 1021 5621 215 56 27 chr5 57233367 57234644 -95302615 + Lx5 LINE L1 5736 7049 -1 3 1021 749 227 16 0 chr5 57234651 57234845 -95302414 + L1_Mur3 LINE L1 3312 3508 -2372 3 1021 1016 215 60 101 chr5 57234848 57235215 -95302044 - RLTR24 LTR ERV1 -135 394 43 3 1021 704 300 28 79 chr5 57235220 57235575 -95301684 + Lx6 LINE L1 5975 6311 -1149 3 1021 341 109 16 0 chr5 57235725 57235789 -95301470 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 3 1021 303 255 30 127 chr5 57235800 57235966 -95301293 + Lx6 LINE L1 6737 6886 -574 3 1021 413 81 0 16 chr5 57236009 57236072 -95301187 + (AGGGGG)n Simple_repeat Simple_repeat 6 67 0 3 1021 1348 253 19 9 chr5 57236072 57236391 -95300868 + Lx6 LINE L1 6963 7284 -176 3 1021 15803 56 1 2 chr5 57236394 57239098 -95298161 - L1Md_F2 LINE L1 0 6582 3884 3 1021 656 294 0 11 chr5 57239074 57239256 -95298003 + Lx6 LINE L1 7270 7449 -11 3 1021 415 350 55 24 chr5 57239344 57239508 -95297751 - B4 SINE B4 -6 286 118 3 1021 21 57 0 0 chr5 57239620 57239655 -95297604 + AT_rich Low_complexity Low_complexity 1 35 0 3 1021 31799 92 30 8 chr5 57240561 57246614 -95290645 - L1Md_F2 LINE L1 -2 6580 396 3 1021 21 0 0 0 chr5 57247502 57247523 -95289736 + AT_rich Low_complexity Low_complexity 1 21 0 3 1021 24 77 0 0 chr5 57248552 57248604 -95288655 + AT_rich Low_complexity Low_complexity 1 52 0 3 1021 195 42 0 0 chr5 57248633 57248657 -95288602 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1021 486 306 52 24 chr5 57249587 57249969 -95287290 + L1MC LINE L1 4975 5367 -779 3 1021 24 0 0 0 chr5 57250102 57250126 -95287133 + AT_rich Low_complexity Low_complexity 1 24 0 3 1021 987 34 0 0 chr5 57250388 57250507 -95286752 + (GA)n Simple_repeat Simple_repeat 2 120 0 3 1021 1032 311 40 103 chr5 57250624 57251433 -95285826 + L1_Mur3 LINE L1 18 699 -7029 3 1021 315 0 0 0 chr5 57251433 57251468 -95285791 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3 1021 1032 316 54 37 chr5 57251468 57252096 -95285163 + L1_Mur3 LINE L1 19 644 -7084 3 1021 1434 144 16 0 chr5 57252097 57252340 -95284919 - L1_Mus3 LINE L1 -3 6635 6389 3 1021 6826 215 60 31 chr5 57252340 57253628 -95283631 + L1_Mur3 LINE L1 3638 4926 -954 3 1021 351 0 0 0 chr5 57253628 57253667 -95283592 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1021 6826 215 60 31 chr5 57253667 57254340 -95282919 + L1_Mur3 LINE L1 4927 5656 -224 3 1021 423 0 0 0 chr5 57254341 57254388 -95282871 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1021 658 208 150 27 chr5 57254395 57254718 -95282541 + RLTR22_Mur LTR ERVK 1533 1844 -4 3 1021 749 227 48 16 chr5 57254773 57254961 -95282298 + Lx6 LINE L1 7267 7460 0 3 1021 477 90 0 0 chr5 57255032 57255099 -95282160 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 1021 13743 131 18 12 chr5 57255346 57256546 -95280713 - Lx LINE L1 -5 6649 5454 3 1021 1103 101 0 0 chr5 57256546 57256694 -95280565 - B1_Mus1 SINE Alu 0 148 1 3 1021 13743 182 18 27 chr5 57256694 57259121 -95278138 - Lx LINE L1 -430 5453 3044 3 1021 4452 169 41 40 chr5 57259129 57260523 -95276736 + L1VL2 LINE L1 135 1214 -2401 3 1021 354 61 0 0 chr5 57260540 57260589 -95276670 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 3 1021 226 151 18 54 chr5 57260589 57260635 -95276624 - Lx3A LINE L1 -15 6966 6920 3 1021 2718 112 79 17 chr5 57260634 57260839 -95276420 - Lx3A LINE L1 -512 6469 6261 3 1021 2648 83 59 3 chr5 57260839 57261214 -95276045 + MTA_Mm LTR MaLR 1 396 0 3 1021 2718 112 79 17 chr5 57261214 57261489 -95275770 - Lx3A LINE L1 -721 6260 5959 3 1021 315 0 0 0 chr5 57262233 57262268 -95274991 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1021 25 51 0 0 chr5 57263323 57263362 -95273897 + AT_rich Low_complexity Low_complexity 1 39 0 3 1021 9834 30 2 0 chr5 57263362 57265213 -95272046 - L1Md_T LINE L1 0 6582 4730 3 1021 1466 128 4 8 chr5 57265586 57265831 -95271428 - Lx3A LINE L1 -6 6975 6732 3 1021 464 307 84 15 chr5 57267153 57267355 -95269904 + B3 SINE B2 1 216 0 3 1021 715 249 107 19 chr5 57267447 57267652 -95269607 + Lx2B LINE L1 6772 6994 -6 3 1021 26 0 0 0 chr5 57268067 57268093 -95269166 + AT_rich Low_complexity Low_complexity 1 26 0 3 1021 22 0 0 0 chr5 57268120 57268142 -95269117 + AT_rich Low_complexity Low_complexity 1 22 0 3 1021 936 317 69 6 chr5 57269544 57269890 -95267369 - MTEa LTR MaLR -2 377 10 3 1021 31 26 0 0 chr5 57269911 57269949 -95267310 + AT_rich Low_complexity Low_complexity 1 38 0 3 1021 3092 271 71 14 chr5 57269994 57271030 -95266229 - Lx9 LINE L1 -179 7465 6370 4 1021 27 49 0 0 chr5 57271057 57271098 -95266161 + AT_rich Low_complexity Low_complexity 1 41 0 4 1021 225 196 0 0 chr5 57271183 57271239 -95266020 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1021 282 268 166 64 chr5 57271239 57271350 -95265909 - Lx9 LINE L1 -1598 6046 5945 4 1021 2918 43 8 8 chr5 57271350 57271722 -95265537 - L1Md_F3 LINE L1 0 6584 6213 4 1021 322 258 62 21 chr5 57271722 57271845 -95265414 - Lx9 LINE L1 -1700 5944 5753 4 1021 602 231 0 0 chr5 57272146 57272263 -95264996 + MTD LTR MaLR 4 120 -299 4 1021 30 0 0 0 chr5 57272263 57272293 -95264966 + AT_rich Low_complexity Low_complexity 1 30 0 4 1021 628 209 9 0 chr5 57272330 57272445 -95264814 - B3 SINE B2 -87 129 14 4 1021 552 266 162 124 chr5 57272446 57272729 -95264530 + MTD LTR MaLR 126 419 0 4 1021 754 207 0 11 chr5 57272761 57272942 -95264317 + CT-rich Low_complexity Low_complexity 2 180 0 4 1021 4483 65 15 3 chr5 57273679 57274268 -95262991 - L1_Mus1 LINE L1 -7 6560 5965 4 1021 2700 50 9 3 chr5 57274269 57274611 -95262648 + L1_Mus1 LINE L1 5598 5941 -625 4 1021 23 33 0 0 chr5 57274937 57274967 -95262292 + AT_rich Low_complexity Low_complexity 1 30 0 4 1021 216 0 0 0 chr5 57275541 57275565 -95261694 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 4 1021 314 303 111 28 chr5 57275754 57275971 -95261288 + MER89 LTR ERV1 293 527 -32 4 1021 596 222 71 26 chr5 57276983 57277251 -95260008 + L1MCa LINE L1 792 1071 -5437 4 1021 474 127 13 0 chr5 57277914 57277993 -95259266 - L1_Mus4 LINE L1 -305 6331 6252 4 127 454 287 20 7 chr5 57278359 57278510 -95258749 - L1_Mur3 LINE L1 -790 5090 4938 4 1022 1623 344 55 25 chr5 57278705 57279733 -95257526 + Lx8 LINE L1 6330 7387 -86 4 1022 66 73 0 0 chr5 57279784 57279920 -95257339 + AT_rich Low_complexity Low_complexity 1 136 0 4 1022 3552 227 61 7 chr5 57280029 57280944 -95256315 - Lx9 LINE L1 -7 7637 6673 4 1022 839 299 8 20 chr5 57281368 57281617 -95255642 - Lx9 LINE L1 -953 6691 6446 4 1022 614 203 7 0 chr5 57281932 57282070 -95255189 + CT-rich Low_complexity Low_complexity 1 139 0 4 1022 432 0 0 0 chr5 57282096 57282144 -95255115 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1022 1098 210 29 8 chr5 57282536 57282781 -95254478 + Lx LINE L1 6397 6646 -8 4 1022 21 71 0 0 chr5 57283117 57283159 -95254100 + AT_rich Low_complexity Low_complexity 1 42 0 4 1022 286 105 0 0 chr5 57283342 57283380 -95253879 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 1022 825 105 14 14 chr5 57283380 57283525 -95253734 + (GAAAA)n Simple_repeat Simple_repeat 5 149 0 4 1022 519 367 24 5 chr5 57283558 57283766 -95253493 + ORR1E LTR MaLR 28 239 -120 4 1022 1459 304 64 19 chr5 57283960 57285194 -95252065 - RMER1A Other Other -361 705 1 4 1022 435 227 245 23 chr5 57285210 57285462 -95251797 - RMER1B Other Other -680 386 45 4 1022 616 329 93 63 chr5 57286323 57286687 -95250572 + MTE2b LTR MaLR 1 375 -4 4 1022 21 0 0 0 chr5 57286918 57286939 -95250320 + AT_rich Low_complexity Low_complexity 1 21 0 4 1022 30 0 0 0 chr5 57287206 57287236 -95250023 + AT_rich Low_complexity Low_complexity 1 30 0 4 1022 3027 83 2 5 chr5 57288868 57289289 -95247970 - L1_Mus2 LINE L1 0 6566 6147 4 1022 1028 337 70 20 chr5 57289289 57289923 -95247336 - Lx8 LINE L1 -644 7052 6395 4 1022 180 0 0 0 chr5 57290060 57290080 -95247179 + (TG)n Simple_repeat Simple_repeat 2 21 0 4 1022 307 314 98 21 chr5 57290112 57290255 -95247004 + Lx8 LINE L1 6208 6361 -1112 4 1022 30 27 0 0 chr5 57291409 57291446 -95245813 + AT_rich Low_complexity Low_complexity 1 37 0 4 1022 247 325 13 13 chr5 57291958 57292036 -95245223 - ID4_ SINE ID -4 79 2 4 1022 21 0 0 0 chr5 57292380 57292401 -95244858 + AT_rich Low_complexity Low_complexity 1 21 0 4 1022 2743 80 8 18 chr5 57292957 57293350 -95243909 + L1_Mus1 LINE L1 6179 6567 0 4 1022 3979 134 11 12 chr5 57293799 57294455 -95242804 - L1_Mus4 LINE L1 -5 6631 5977 4 1022 26281 151 42 4 chr5 57294765 57296277 -95240982 + L1_Mus2 LINE L1 492 2085 -3798 4 1022 531 0 0 0 chr5 57296277 57296336 -95240923 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 4 1022 26281 148 20 12 chr5 57296336 57300809 -95236450 + L1_Mus2 LINE L1 2086 6566 0 4 1022 22 0 0 0 chr5 57301820 57301842 -95235417 + AT_rich Low_complexity Low_complexity 1 22 0 4 1022 203 171 0 0 chr5 57301978 57302019 -95235240 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1022 542 121 9 0 chr5 57302020 57302136 -95235123 + (GA)n Simple_repeat Simple_repeat 2 118 0 4 1022 24 0 0 0 chr5 57302831 57302855 -95234404 + AT_rich Low_complexity Low_complexity 1 24 0 4 1022 1460 0 4 17 chr5 57303383 57303624 -95233635 + (TTC)n Simple_repeat Simple_repeat 1 237 0 4 1022 540 160 0 25 chr5 57303624 57303746 -95233513 + CT-rich Low_complexity Low_complexity 5 123 0 4 1022 4872 118 17 21 chr5 57304198 57304963 -95232296 + Lx LINE L1 5891 6652 -2 4 1022 21 0 0 0 chr5 57305045 57305066 -95232193 + AT_rich Low_complexity Low_complexity 1 21 0 4 1022 500 226 106 31 chr5 57305082 57305242 -95232017 - RLTR24 LTR ERV1 -339 190 19 4 1022 5793 128 90 8 chr5 57305244 57306567 -95230692 + L1_Mus4 LINE L1 5176 6615 -21 4 1022 723 54 0 0 chr5 57306567 57306659 -95230600 + (GA)n Simple_repeat Simple_repeat 2 93 0 4 1022 4332 217 55 71 chr5 57306659 57307146 -95230113 + Lx2 LINE L1 6495 6996 -1 4 1022 275 186 0 0 chr5 57307195 57307238 -95230021 - RLTR24 LTR ERV1 -486 43 1 4 1022 721 293 66 4 chr5 57307319 57307576 -95229683 - Lx9 LINE L1 -754 6890 6618 4 1022 471 322 33 33 chr5 57307759 57308035 -95229224 - RLTR12B LTR ERVK -252 276 1 4 1022 824 286 4 24 chr5 57308042 57308289 -95228970 + Lx9 LINE L1 6366 6607 -1037 4 1022 439 269 11 0 chr5 57308331 57308424 -95228835 + URR1B DNA MER1_type 5 98 -127 4 1022 246 88 0 81 chr5 57309136 57309198 -95228061 + GA-rich Low_complexity Low_complexity 2 58 0 4 1022 6555 125 38 9 chr5 57309336 57310009 -95227250 + L1_Mur2 LINE L1 1349 2049 -3828 4 1022 321 26 0 0 chr5 57310009 57310047 -95227212 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1022 6555 125 38 9 chr5 57310047 57310523 -95226736 + L1_Mur2 LINE L1 2050 2531 -3346 4 1022 1006 122 13 13 chr5 57310518 57310667 -95226592 + Lx4A LINE L1 6432 6580 -478 4 1022 195 42 0 0 chr5 57310804 57310828 -95226431 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 1022 467 219 31 0 chr5 57310838 57310934 -95226325 - B1_Mur4 SINE Alu -50 100 2 4 1022 522 217 0 9 chr5 57310943 57311050 -95226209 + MTC LTR MaLR 314 419 -2 4 1022 27 29 0 0 chr5 57311133 57311167 -95226092 + AT_rich Low_complexity Low_complexity 1 34 0 4 1022 327 25 0 0 chr5 57312170 57312210 -95225049 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 4 1022 33 0 0 0 chr5 57312837 57312870 -95224389 + AT_rich Low_complexity Low_complexity 1 33 0 4 1022 256 263 0 0 chr5 57313425 57313482 -95223777 + T-rich Low_complexity Low_complexity 2 58 0 4 1022 848 268 25 0 chr5 57314140 57314338 -95222921 - B3 SINE B2 0 216 14 4 1022 369 0 0 0 chr5 57314955 57314996 -95222263 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 4 1022 21 36 0 0 chr5 57315759 57315787 -95221472 + AT_rich Low_complexity Low_complexity 1 28 0 4 1022 21 0 0 0 chr5 57315794 57315815 -95221444 + AT_rich Low_complexity Low_complexity 1 21 0 4 1022 233 250 0 16 chr5 57316543 57316604 -95220655 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 4 1022 641 255 20 0 chr5 57316605 57316754 -95220505 - URR1B DNA MER1_type -72 153 2 4 1022 35 41 0 0 chr5 57317414 57317463 -95219796 + AT_rich Low_complexity Low_complexity 1 49 0 4 1022 21 0 0 0 chr5 57317498 57317519 -95219740 + AT_rich Low_complexity Low_complexity 1 21 0 4 1022 469 356 57 87 chr5 57317794 57318160 -95219099 - ORR1E LTR MaLR -4 355 1 4 1022 369 309 38 11 chr5 57318586 57318769 -95218490 + Lx9 LINE L1 7260 7447 -197 4 1022 276 226 75 0 chr5 57318794 57318900 -95218359 + Lx9 LINE L1 7530 7643 -1 4 1022 5286 93 95 5 chr5 57319334 57320113 -95217146 - L1_Mus3 LINE L1 0 6638 5790 4 1022 1744 91 0 0 chr5 57320113 57320345 -95216914 + L1_Mm LINE L1 5377 5608 -275 4 1022 699 56 0 0 chr5 57320356 57320446 -95216813 - L1_Mm LINE L1 -423 5460 5371 4 1022 4259 98 15 0 chr5 57320456 57321065 -95216194 + L1_Mus3 LINE L1 6013 6630 -8 4 1022 729 98 0 0 chr5 57321436 57321548 -95215711 + (TTTC)n Simple_repeat Simple_repeat 1 112 0 4 1022 21 36 0 0 chr5 57321702 57321730 -95215529 + AT_rich Low_complexity Low_complexity 1 28 0 4 1022 3822 184 25 11 chr5 57321822 57322613 -95214646 + L1_Mur3 LINE L1 4761 5562 -318 4 1022 437 324 57 21 chr5 57322647 57322839 -95214420 - MER31A LTR ERV1 -157 328 130 4 1022 563 293 69 20 chr5 57323301 57323503 -95213756 - B3 SINE B2 0 216 5 4 1022 34 55 0 0 chr5 57323717 57323772 -95213487 + AT_rich Low_complexity Low_complexity 1 55 0 4 1022 1699 38 0 5 chr5 57323933 57324144 -95213115 - L1Md_T LINE L1 -1 6581 6372 4 1022 291 412 34 0 chr5 57324429 57324548 -95212711 + L2b LINE L2 3252 3374 -1 4 1022 838 164 0 0 chr5 57326389 57326517 -95210742 + Lx3B LINE L1 6211 6338 -635 4 1022 1290 167 64 34 chr5 57326515 57326782 -95210477 + Lx3B LINE L1 6699 6973 0 4 1022 955 25 16 0 chr5 57327296 57327418 -95209841 + (TTTC)n Simple_repeat Simple_repeat 1 124 0 4 1022 1160 296 33 14 chr5 57327711 57328074 -95209185 - ORR1D2 LTR MaLR 0 370 1 4 1022 234 346 106 62 chr5 57328137 57328393 -95208866 + B4A SINE B4 13 279 -13 4 1022 1555 162 79 71 chr5 57328985 57329391 -95207868 + RLTR9E LTR ERVK 1 409 0 4 1022 643 245 20 78 chr5 57329400 57329719 -95207540 + MMETn-int LTR ERVK 10 372 -2942 4 1022 309 196 0 0 chr5 57329714 57329770 -95207489 + RLTR45-int LTR ERVK 2091 2146 -5098 4 1022 253 130 0 0 chr5 57330194 57330240 -95207019 + RMER16-int LTR ERVK 141 186 -5220 4 1022 326 140 0 0 chr5 57330314 57330364 -95206895 + ETnERV2-int LTR ERVK 1721 1770 -5636 4 1022 1243 257 7 4 chr5 57330741 57331014 -95206245 + Lx6 LINE L1 6992 7265 -195 4 1022 2682 177 57 42 chr5 57331065 57331630 -95205629 + RLTR20B3 LTR ERVK 5 577 0 4 1022 599 280 0 0 chr5 57331634 57331784 -95205475 + Lx6 LINE L1 7273 7422 -38 4 1022 23 0 0 0 chr5 57331784 57331807 -95205452 + AT_rich Low_complexity Low_complexity 1 23 0 5 1022 399 41 0 0 chr5 57331882 57331931 -95205328 + (TA)n Simple_repeat Simple_repeat 2 50 0 5 1022 351 0 0 0 chr5 57331931 57331969 -95205290 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1022 1667 200 121 53 chr5 57332399 57332869 -95204390 + Lx2B LINE L1 6497 6998 -2 5 1022 2686 72 3 0 chr5 57333317 57333690 -95203569 - L1_Mm LINE L1 -2488 3395 3022 5 1022 2448 74 0 0 chr5 57333689 57334001 -95203258 + L1Md_F2 LINE L1 5275 5586 -297 5 1022 7201 82 6 13 chr5 57334002 57335004 -95202255 + L1Md_F2 LINE L1 5588 6582 0 5 1022 278 26 0 25 chr5 57335498 57335538 -95201721 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1022 22 0 0 0 chr5 57336262 57336284 -95200975 + AT_rich Low_complexity Low_complexity 1 22 0 5 1022 268 213 0 62 chr5 57336608 57336673 -95200586 + MT2C_Mm LTR ERVL 377 437 -38 5 1022 1379 255 13 31 chr5 57336744 57337129 -95200130 + ORR1C1 LTR MaLR 1 378 0 5 1022 3503 211 120 88 chr5 57337674 57338731 -95198528 - RLTR25A LTR ERVK -12 1091 1 5 1022 258 214 54 87 chr5 57338732 57338824 -95198435 - RLTR25A LTR ERVK -1014 89 1 5 1022 333 0 0 0 chr5 57339586 57339623 -95197636 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1022 328 330 70 21 chr5 57339814 57340000 -95197259 - MER110A LTR ERV1 -219 249 55 5 1022 630 293 40 50 chr5 57343202 57343403 -95193856 + B3A SINE B2 18 216 0 5 1022 227 154 73 44 chr5 57343534 57343602 -95193657 + L1MD3 LINE L1 7031 7100 -895 5 1022 198 171 0 0 chr5 57343960 57344001 -95193258 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 5 1022 275 314 58 7 chr5 57345115 57345253 -95192006 - L1MD3 LINE L1 -16 7979 7835 5 1022 1187 61 0 0 chr5 57345258 57345405 -95191854 + B1_Mus1 SINE Alu 1 147 -1 5 1022 816 149 0 0 chr5 57345872 57346046 -95191213 + (TC)n Simple_repeat Simple_repeat 1 174 0 5 1022 280 377 19 0 chr5 57346245 57346351 -95190908 - RSINE1 SINE B4 -16 149 42 5 1022 1275 89 0 0 chr5 57349033 57349212 -95188047 + (GAA)n Simple_repeat Simple_repeat 2 180 0 5 1022 301 274 36 54 chr5 57349353 57349465 -95187794 + L1MC3 LINE L1 6742 6851 -934 5 1022 482 281 57 34 chr5 57350358 57350535 -95186724 - MTD LTR MaLR 0 419 239 5 1022 403 313 73 19 chr5 57350947 57351152 -95186107 - Lx9 LINE L1 -171 7473 7258 5 1022 352 299 114 90 chr5 57353108 57353398 -95183861 + MER44B DNA MER2_type 200 496 -54 5 1022 1960 165 9 0 chr5 57353398 57353743 -95183516 + L1_Mur1 LINE L1 4777 5124 -762 5 1022 288 319 39 16 chr5 57354427 57354609 -95182650 + RMER16-int LTR ERVK 181 366 -6878 5 1022 567 0 0 0 chr5 57354752 57354815 -95182444 + (GA)n Simple_repeat Simple_repeat 2 64 0 5 1022 1699 167 112 21 chr5 57354815 57355240 -95182019 + RMER16-int LTR ERVK 214 670 -4736 5 1022 482 200 25 34 chr5 57355248 57355367 -95181892 + RMER16-int LTR ERVK 952 1060 -5077 5 1022 638 252 0 43 chr5 57355380 57355542 -95181717 + ETnERV2-int LTR ERVK 2454 2608 -4798 5 1022 9637 134 36 11 chr5 57355542 57356136 -95181123 + ETnERV2-int LTR ERVK 3055 3669 -3737 5 1022 2033 108 16 13 chr5 57356136 57356444 -95180815 - RLTR27 LTR ERVK 0 309 1 5 1022 9637 134 36 11 chr5 57356444 57357434 -95179825 + ETnERV2-int LTR ERVK 3670 4679 -2727 5 1022 3114 62 7 0 chr5 57357432 57357836 -95179423 + ETnERV2-int LTR ERVK 5356 5762 -1644 5 1022 6337 141 74 91 chr5 57357824 57359248 -95178011 + RLTR45-int LTR ERVK 4672 6071 -1173 5 1022 1236 60 43 1 chr5 57359286 57359482 -95177777 + RLTR13D5 LTR ERVK 291 509 -524 5 1022 252 284 0 0 chr5 57359513 57359594 -95177665 + RLTR45-int LTR ERVK 6808 6888 -1329 5 1022 455 329 13 0 chr5 57359931 57360080 -95177179 + ETnERV2-int LTR ERVK 6496 6646 -760 5 1022 197 270 65 39 chr5 57360615 57360692 -95176567 - L4 LINE RTE -786 1243 1165 5 1022 888 168 0 0 chr5 57360878 57361027 -95176232 + L1_Mur1 LINE L1 5109 5257 -620 5 1022 37610 18 1 8 chr5 57361030 57366220 -95171039 + L1Md_A LINE L1 440 5586 -297 5 1022 8653 20 0 0 chr5 57366220 57367214 -95170045 + L1Md_A LINE L1 5587 6580 -2 5 1022 2344 87 24 0 chr5 57367295 57367627 -95169632 - L1_Mus2 LINE L1 -488 6078 5739 5 1022 3580 102 6 6 chr5 57367627 57368147 -95169112 + L1_Mus2 LINE L1 6046 6565 -1 5 1022 2980 152 20 2 chr5 57368152 57368661 -95168598 + L1_Mm LINE L1 5286 5803 -80 5 1022 2080 120 37 3 chr5 57368662 57368988 -95168271 - L1_Mus3 LINE L1 -7 6631 6295 5 1022 408 231 0 11 chr5 57368988 57369080 -95168179 - RMER17B LTR ERVK 0 958 868 5 1022 1425 115 3 223 chr5 57369081 57369587 -95167672 - L1_Mus2 LINE L1 -679 5887 5494 5 1022 4525 150 9 0 chr5 57369582 57370341 -95166918 + Lx2 LINE L1 4727 5492 -391 5 1022 6444 159 31 13 chr5 57370342 57371523 -95165736 + Lx2 LINE L1 5793 6995 -2 5 1022 31 44 0 0 chr5 57371523 57371568 -95165691 + AT_rich Low_complexity Low_complexity 1 45 0 5 1022 30 83 0 0 chr5 57371589 57371661 -95165598 + AT_rich Low_complexity Low_complexity 1 72 0 5 1022 30 83 0 0 chr5 57371682 57371754 -95165505 + AT_rich Low_complexity Low_complexity 1 72 0 5 1022 30 83 0 0 chr5 57371775 57371847 -95165412 + AT_rich Low_complexity Low_complexity 1 72 0 5 1022 43 35 0 0 chr5 57371868 57371925 -95165334 + AT_rich Low_complexity Low_complexity 1 57 0 5 1022 27699 146 18 16 chr5 57373029 57379418 -95157841 - L1_Mus3 LINE L1 0 6638 233 5 1022 1023 106 0 0 chr5 57379753 57379913 -95157346 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 5 1022 309 288 65 48 chr5 57380046 57380232 -95157027 - MER63D DNA AcHobo -542 519 331 5 1022 1014 298 44 104 chr5 57380405 57380816 -95156443 - MTE2b LTR MaLR -20 359 3 5 1022 318 26 0 0 chr5 57381031 57381070 -95156189 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1022 979 98 0 0 chr5 57381072 57381205 -95156054 - B1_Mm SINE Alu -12 135 3 5 1022 6116 72 8 17 chr5 57381279 57382114 -95155145 + L1_Mus1 LINE L1 5740 6567 0 5 1022 22 0 0 0 chr5 57382167 57382189 -95155070 + AT_rich Low_complexity Low_complexity 1 22 0 5 1022 4433 166 68 13 chr5 57382934 57383759 -95153500 - Lx3B LINE L1 -60 6913 6044 5 1022 1843 231 77 52 chr5 57383801 57384344 -95152915 + Lx2B LINE L1 6439 6995 -5 5 1022 32508 41 0 4 chr5 57384354 57389584 -95147675 + L1Md_T LINE L1 287 5586 -300 5 1022 8381 34 0 0 chr5 57389587 57390583 -95146676 + L1Md_T LINE L1 5590 6585 0 5 1022 252 373 13 0 chr5 57390873 57390948 -95146311 - ID4 SINE ID -4 79 4 5 1022 22 56 0 0 chr5 57391304 57391340 -95145919 + AT_rich Low_complexity Low_complexity 1 36 0 5 1022 21 82 0 0 chr5 57392568 57392617 -95144642 + AT_rich Low_complexity Low_complexity 1 49 0 5 1022 2755 70 137 139 chr5 57392869 57393381 -95143878 + RLTR1B LTR ERV1 2 512 0 5 1022 487 337 87 0 chr5 57393640 57393836 -95143423 + ORR1D1 LTR MaLR 1 213 -161 5 1022 2410 248 161 31 chr5 57393974 57394549 -95142710 + ORR1D1-int LTR MaLR 4 683 -687 5 1022 7043 68 5 0 chr5 57394549 57395438 -95141821 + RLTR13B1 LTR ERVK 1 893 0 5 1022 2410 248 161 31 chr5 57395438 57395645 -95141614 + ORR1D1-int LTR MaLR 684 888 -482 5 1022 1150 253 98 9 chr5 57395660 57395805 -95141454 + Lx7 LINE L1 7050 7209 -487 5 1022 216 0 0 0 chr5 57395805 57395829 -95141430 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1022 1150 253 98 9 chr5 57395829 57396018 -95141241 + Lx7 LINE L1 7210 7413 -283 5 1022 3981 181 34 9 chr5 57396214 57397007 -95140252 + RLTR22_Mur LTR ERVK 1 813 -1035 5 1022 1047 217 61 8 chr5 57397328 57397574 -95139685 + RLTR22_Mur LTR ERVK 1590 1848 0 5 1022 614 283 110 23 chr5 57397577 57398005 -95139254 + ORR1D1-int LTR MaLR 886 1370 0 5 1022 294 253 89 0 chr5 57398005 57398072 -95139187 + ORR1D1 LTR MaLR 1 74 -300 5 1022 430 200 24 0 chr5 57398072 57398157 -95139102 + RMER6C LTR ERVK 1 87 -603 5 1022 4186 173 66 48 chr5 57398168 57399108 -95138151 + RMER17B LTR ERVK 2 958 0 5 1022 1705 212 91 40 chr5 57399133 57399260 -95137999 + RMER6C LTR ERVK 135 265 -425 5 1022 3562 71 4 0 chr5 57399260 57399723 -95137536 + L1_Mus1 LINE L1 6103 6567 0 5 1022 1705 212 91 40 chr5 57399723 57400121 -95137138 + RMER6C LTR ERVK 266 687 -3 5 1022 606 175 0 0 chr5 57400208 57400351 -95136908 + CT-rich Low_complexity Low_complexity 2 144 0 5 1022 31 0 0 0 chr5 57401783 57401814 -95135445 + AT_rich Low_complexity Low_complexity 1 31 0 5 1022 1470 265 51 15 chr5 57402213 57402607 -95134652 - MTD LTR MaLR -2 417 10 5 1022 318 69 52 0 chr5 57402607 57402665 -95134594 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1022 198 103 0 0 chr5 57403570 57403599 -95133660 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1022 587 126 19 0 chr5 57403756 57403859 -95133400 + (TTTC)n Simple_repeat Simple_repeat 2 106 0 5 1022 520 297 55 34 chr5 57405273 57405510 -95131749 - MER92B LTR ERV1 -394 242 1 5 1022 3525 73 0 0 chr5 57406188 57406639 -95130620 + L1_Mus1 LINE L1 6117 6567 0 5 1022 387 0 0 0 chr5 57406950 57406993 -95130266 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1022 1051 82 59 94 chr5 57406994 57407196 -95130063 - L1_Mus2 LINE L1 -10 6556 6362 5 1022 981 42 50 0 chr5 57407208 57407328 -95129931 - L1_Mus2 LINE L1 -310 6256 6131 5 1022 1946 60 16 0 chr5 57407321 57407572 -95129687 + L1_Mus2 LINE L1 5877 6131 -435 5 1022 581 340 104 36 chr5 57407583 57408083 -95129176 - RMER5 LTR ERV1 0 534 1 5 1022 2855 261 45 10 chr5 57408106 57408810 -95128449 - Lx5 LINE L1 -79 6971 6243 5 1022 270 290 0 0 chr5 57408807 57408876 -95128383 + Lx5 LINE L1 5944 6012 -1038 5 1022 3169 14 0 8 chr5 57408949 57409319 -95127940 + IAPLTR1_Mm LTR ERVK 1 367 0 5 127 55278 23 18 0 chr5 57409319 57415669 -95121590 + IAPEz-int LTR ERVK 8 6468 -13 5 1023 332 241 95 41 chr5 57415669 57415682 -95121577 + Lx5 LINE L1 6051 6063 -987 5 1023 3192 11 0 8 chr5 57415682 57416052 -95121207 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1023 332 241 95 41 chr5 57416052 57416207 -95121052 + Lx5 LINE L1 6064 6227 -823 5 1023 22 35 0 0 chr5 57416477 57416506 -95120753 + AT_rich Low_complexity Low_complexity 1 29 0 5 1023 589 369 64 3 chr5 57416775 57417088 -95120171 - Lx8 LINE L1 -349 7124 6793 5 1023 829 348 15 41 chr5 57417092 57417556 -95119703 + Lx7 LINE L1 6656 7107 -589 5 1023 805 284 123 30 chr5 57418262 57418596 -95118663 + ORR1D1 LTR MaLR 1 365 -9 5 1023 228 270 16 0 chr5 57418991 57419054 -95118205 + CR1_Mam LINE CR1 1518 1581 -623 5 1023 1058 75 0 33 chr5 57419782 57419934 -95117325 + B1_Mm SINE Alu 1 147 0 5 1023 273 57 0 0 chr5 57419934 57419969 -95117290 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1023 541 315 43 0 chr5 57419986 57420146 -95117113 + B3 SINE B2 50 215 -1 5 1023 264 379 47 20 chr5 57420163 57420311 -95116948 + ID_B1 SINE B4 6 157 -67 5 1023 22 0 0 0 chr5 57420513 57420535 -95116724 + AT_rich Low_complexity Low_complexity 1 22 0 5 1023 238 274 126 0 chr5 57421097 57421192 -95116067 - MLT1A0 LTR MaLR -256 109 3 5 1023 6094 65 39 4 chr5 57422751 57423552 -95113707 - L1Md_F2 LINE L1 -2 6580 5752 5 1023 6384 55 0 1 chr5 57423552 57424346 -95112913 - L1Md_F2 LINE L1 -270 5613 4821 5 1023 457 70 0 0 chr5 57424346 57424403 -95112856 - L1Md_F2 LINE L1 -1006 4877 4821 5 1023 1044 92 26 7 chr5 57424398 57424551 -95112708 + L1_Mm LINE L1 3370 3525 -2358 5 1023 453 191 11 27 chr5 57425274 57425457 -95111802 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1023 405 0 0 0 chr5 57425457 57425502 -95111757 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1023 21 36 0 0 chr5 57425887 57425915 -95111344 + AT_rich Low_complexity Low_complexity 1 28 0 6 1023 7812 50 3 0 chr5 57425973 57426932 -95110327 - L1Md_F2 LINE L1 -4 6578 5617 6 1023 1848 74 0 0 chr5 57426969 57427225 -95110034 - Lx3_Mus LINE L1 -1765 4121 3866 6 1023 10747 113 37 13 chr5 57427225 57429562 -95107697 + Lx3_Mus LINE L1 4114 6512 -497 6 1023 1284 164 4 0 chr5 57429560 57429785 -95107474 - Lx3B LINE L1 -1046 5927 5702 6 1023 501 62 0 0 chr5 57433537 57433602 -95103657 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 1023 249 304 0 0 chr5 57434267 57434336 -95102923 + ID4_ SINE ID 2 70 -13 6 1023 378 0 0 0 chr5 57434340 57434382 -95102877 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1023 254 143 0 20 chr5 57434412 57434462 -95102797 + GA-rich Low_complexity Low_complexity 1 49 0 6 1023 3408 128 6 2 chr5 57434904 57435422 -95101837 + Lx LINE L1 6133 6652 -2 6 1023 228 374 8 73 chr5 57436897 57437021 -95100238 - B1F2 SINE Alu -32 117 2 6 1023 673 202 37 9 chr5 57437083 57437298 -95099961 + Lx9 LINE L1 7409 7629 -15 6 1023 1047 139 0 0 chr5 57437809 57437989 -95099270 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1023 33 56 0 0 chr5 57438041 57438095 -95099164 + AT_rich Low_complexity Low_complexity 1 54 0 6 1023 237 185 0 0 chr5 57438459 57438524 -95098735 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 1023 294 370 0 36 chr5 57438627 57438767 -95098492 - B1_Mus1 SINE Alu -1 147 13 6 1023 180 0 0 0 chr5 57439235 57439255 -95098004 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1023 919 283 80 39 chr5 57440105 57440520 -95096739 + Lx6 LINE L1 5770 6201 -1259 6 1023 730 319 35 46 chr5 57440732 57441103 -95096156 + Lx8 LINE L1 7107 7473 0 6 1023 253 387 7 66 chr5 57442276 57442428 -95094831 - B1_Mur3 SINE Alu -1 148 6 6 1023 756 33 0 0 chr5 57442540 57442631 -95094628 + (TA)n Simple_repeat Simple_repeat 2 92 0 6 1023 24 0 0 0 chr5 57442943 57442967 -95094292 + AT_rich Low_complexity Low_complexity 1 24 0 6 1023 339 25 0 0 chr5 57443369 57443409 -95093850 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1023 30 45 0 0 chr5 57443618 57443662 -95093597 + AT_rich Low_complexity Low_complexity 1 44 0 6 1023 230 319 41 66 chr5 57443668 57443789 -95093470 - RSINE1 SINE B4 -4 161 44 6 1023 247 277 33 74 chr5 57443837 57443958 -95093301 - PB1D10 SINE Alu -1 116 1 6 1023 234 356 42 30 chr5 57443958 57444028 -95093231 - ID SINE ID -149 75 4 6 1023 369 236 11 11 chr5 57444417 57444511 -95092748 + Lx9 LINE L1 7283 7376 -268 6 1023 204 179 0 0 chr5 57444916 57444955 -95092304 + (TA)n Simple_repeat Simple_repeat 1 39 0 6 1023 240 206 0 31 chr5 57444959 57445024 -95092235 + Lx7 LINE L1 5754 5816 -1880 6 1023 2624 71 0 0 chr5 57445475 57445834 -95091425 + L1_Mus1 LINE L1 6223 6567 0 6 1023 1839 181 25 14 chr5 57447709 57448063 -95089196 - ORR1B2 LTR MaLR -8 359 2 6 1023 5349 273 80 37 chr5 57448468 57449562 -95087697 - Lx6 LINE L1 -6 7454 6286 6 1023 828 80 0 0 chr5 57449562 57449675 -95087584 + (GAAAA)n Simple_repeat Simple_repeat 3 115 0 6 1023 5349 237 40 41 chr5 57449675 57450768 -95086491 - Lx6 LINE L1 -1175 6285 5185 6 1023 253 284 12 36 chr5 57450796 57450880 -95086379 + RLTR25B LTR ERVK 417 498 -530 6 1023 324 207 0 107 chr5 57450820 57450923 -95086336 + MT2B LTR ERVL 196 287 -314 6 1023 1696 189 6 12 chr5 57451057 57451378 -95085881 + RMER6C LTR ERVK 370 688 -2 6 1023 3337 221 45 16 chr5 57451381 57452217 -95085042 - Lx6 LINE L1 -691 5189 4329 6 1023 23 33 0 0 chr5 57453048 57453078 -95084181 + AT_rich Low_complexity Low_complexity 1 30 0 6 1023 23 0 0 0 chr5 57453102 57453125 -95084134 + AT_rich Low_complexity Low_complexity 1 23 0 6 1023 297 246 75 27 chr5 57453457 57453593 -95083666 - MTD LTR MaLR 0 379 233 6 1023 369 0 0 0 chr5 57453593 57453634 -95083625 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1023 573 264 723 2 chr5 57453634 57453768 -95083491 - MTD LTR MaLR -147 232 1 6 1023 1140 216 143 60 chr5 57453977 57454326 -95082933 + ORR1C1 LTR MaLR 1 378 0 6 1023 1060 119 11 0 chr5 57455785 57455962 -95081297 + (TTTTC)n Simple_repeat Simple_repeat 2 180 0 6 1023 415 154 76 11 chr5 57455962 57456049 -95081210 - RLTR1B LTR ERV1 -76 436 343 6 1023 2789 70 57 2 chr5 57456036 57456437 -95080822 - RLTR1B LTR ERV1 -89 423 1 6 1023 6228 102 35 75 chr5 57456437 57458602 -95078657 - RLTR1B-int LTR ERV1 -700 3990 1 6 1023 1051 126 18 0 chr5 57458602 57458769 -95078490 - RLTR1B LTR ERV1 0 512 343 6 1023 282 182 0 0 chr5 57458773 57458828 -95078431 - RLTR1B LTR ERV1 -102 410 356 6 1023 427 205 82 60 chr5 57459731 57459918 -95077341 - Lx3C LINE L1 0 7009 6803 6 1023 4925 71 6 20 chr5 57459918 57460607 -95076652 + ORR1A1-int LTR MaLR 1114 1792 0 6 1023 2172 105 3 3 chr5 57460607 57460912 -95076347 + ORR1A1 LTR MaLR 1 305 -41 6 1023 23180 110 89 6 chr5 57460912 57465298 -95071961 - L1_Mur1 LINE L1 -652 5234 228 6 1023 1010 134 29 0 chr5 57465302 57465473 -95071786 + RLTR9A2 LTR ERVK 1 176 -207 6 1023 1013 92 0 0 chr5 57465474 57465615 -95071644 - B1_Mus1 SINE Alu 0 148 8 6 1023 1395 198 57 13 chr5 57465564 57465882 -95071377 + RLTR9B LTR ERVK 106 437 0 6 1023 628 250 9 76 chr5 57465921 57466146 -95071113 - L1_Mur1 LINE L1 -6772 212 3 6 1023 180 0 0 0 chr5 57466576 57466596 -95070663 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1023 441 154 0 0 chr5 57467017 57467108 -95070151 + (TG)n Simple_repeat Simple_repeat 1 91 0 6 1023 437 254 8 76 chr5 57467108 57467227 -95070032 - PB1D9 SINE Alu -3 117 7 6 1023 29 28 0 0 chr5 57467235 57467271 -95069988 + AT_rich Low_complexity Low_complexity 1 36 0 6 1023 5101 47 11 0 chr5 57467271 57467904 -95069355 + L1Md_F2 LINE L1 5940 6579 -3 6 1023 741 198 30 6 chr5 57468735 57468903 -95068356 + Lx7 LINE L1 5141 5312 -568 6 1023 2887 263 31 16 chr5 57468995 57469877 -95067382 + Lx7 LINE L1 5770 6664 -1032 6 1023 1512 191 48 23 chr5 57469884 57470194 -95067065 - ORR1A4 LTR MaLR -11 318 1 6 1023 2247 213 62 85 chr5 57470194 57470852 -95066407 + Lx7 LINE L1 6664 7306 -390 6 1023 259 89 36 0 chr5 57470852 57470908 -95066351 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 6 1023 934 87 0 7 chr5 57471082 57471232 -95066027 - MusHAL1 LINE L1 0 2712 2564 6 1023 23 33 0 0 chr5 57471261 57471291 -95065968 + AT_rich Low_complexity Low_complexity 1 30 0 6 1023 266 0 29 0 chr5 57471512 57471546 -95065713 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1023 540 0 0 0 chr5 57471548 57471608 -95065651 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1023 1013 101 0 82 chr5 57471947 57472101 -95065158 + L1_Mus4 LINE L1 6458 6610 -26 6 1023 3818 126 18 12 chr5 57472101 57472702 -95064557 + L1_Mus4 LINE L1 6019 6623 -13 6 1023 1013 101 0 82 chr5 57472702 57472742 -95064517 + L1_Mus4 LINE L1 6611 6636 0 6 1023 234 105 0 0 chr5 57473574 57473612 -95063647 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1023 1054 69 13 40 chr5 57474261 57474412 -95062847 + B1_Mm SINE Alu 1 147 0 6 1023 330 80 0 0 chr5 57474412 57474462 -95062797 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 6 1023 567 0 0 0 chr5 57474467 57474530 -95062729 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 1023 24 77 0 0 chr5 57474801 57474853 -95062406 + AT_rich Low_complexity Low_complexity 1 52 0 6 1023 253 47 23 23 chr5 57475084 57475128 -95062131 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 6 1023 1098 77 14 0 chr5 57475138 57475281 -95061978 - B1_Mm SINE Alu 0 147 3 6 1023 594 286 176 33 chr5 57475695 57476541 -95060718 - L1M4 LINE L1 -2696 3450 2484 6 1023 674 235 26 19 chr5 57476733 57476889 -95060370 + RLTR40 LTR ERVK 566 722 -95 6 1023 22 0 0 0 chr5 57478528 57478550 -95058709 + AT_rich Low_complexity Low_complexity 1 22 0 6 1023 295 390 6 0 chr5 57479222 57479399 -95057860 + Lx8 LINE L1 7036 7213 -260 6 1023 231 367 68 62 chr5 57480325 57480517 -95056742 - MLT1E3 LTR MaLR -61 563 371 6 1023 2989 69 10 3 chr5 57480686 57481076 -95056183 - L1_Mus2 LINE L1 -162 6404 6012 6 1023 3535 128 74 0 chr5 57481138 57481679 -95055580 + Lx LINE L1 6074 6654 0 6 1023 248 275 87 55 chr5 57481833 57481960 -95055299 - MLT2D LTR ERVL -279 135 5 6 1023 366 284 166 45 chr5 57483225 57483472 -95053787 + B4A SINE B4 4 280 -12 6 1023 23 54 0 0 chr5 57483976 57484013 -95053246 + AT_rich Low_complexity Low_complexity 1 37 0 6 1023 983 119 0 0 chr5 57485630 57485764 -95051495 + B1_Mus1 SINE Alu 5 138 -10 6 1023 285 51 0 0 chr5 57485764 57485803 -95051456 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1023 969 126 6 11 chr5 57486172 57486349 -95050910 + (TTC)n Simple_repeat Simple_repeat 3 178 0 6 1023 419 178 27 36 chr5 57486468 57486579 -95050680 + RMER1C Other Other 1232 1341 -1 6 1023 31 0 0 0 chr5 57486606 57486637 -95050622 + AT_rich Low_complexity Low_complexity 1 31 0 6 1023 11056 52 1 7 chr5 57487312 57489382 -95047877 - L1Md_F2 LINE L1 -3 6579 4528 6 1023 3407 184 22 26 chr5 57492346 57493105 -95044154 - RMER6A LTR ERVK 0 756 1 6 1023 190 298 149 0 chr5 57494256 57494350 -95042909 + L2 LINE L2 2677 2784 -635 6 1023 687 302 6 6 chr5 57494846 57495019 -95042240 + B3 SINE B2 42 214 -2 6 1023 826 277 80 51 chr5 57495487 57495915 -95041344 - Lx9 LINE L1 -184 7460 6887 6 1023 1122 227 21 144 chr5 57496072 57496142 -95041117 - ORR1B1 LTR MaLR 0 394 327 6 1023 1114 68 0 33 chr5 57496142 57496282 -95040977 + B1_Mus1 SINE Alu 1 139 -9 6 1023 369 0 0 0 chr5 57496282 57496323 -95040936 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 6 1023 1114 68 0 33 chr5 57496323 57496335 -95040924 + B1_Mus1 SINE Alu 140 148 0 6 1023 1122 227 21 144 chr5 57496335 57496598 -95040661 - ORR1B1 LTR MaLR -68 326 102 6 1023 4208 246 162 27 chr5 57496705 57497950 -95039309 + Lx5 LINE L1 5373 6775 -275 6 1023 534 128 0 33 chr5 57497950 57498071 -95039188 - L1Md_F2 LINE L1 -1 6581 6465 6 1023 4208 260 72 35 chr5 57498071 57498327 -95038932 + Lx5 LINE L1 6776 7050 0 6 1023 1150 130 16 26 chr5 57498774 57498964 -95038295 - B2_Mm2 SINE B2 -7 188 1 6 1023 217 227 0 143 chr5 57499219 57499296 -95037963 - MIR3 SINE MIR -1 207 142 6 1023 931 142 0 51 chr5 57499354 57499510 -95037749 + B1_Mus1 SINE Alu 1 148 0 6 1023 3790 68 2 4 chr5 57499510 57500000 -95037259 + L1Md_F2 LINE L1 5937 6425 -157 6 1023 994 60 15 0 chr5 57500002 57500136 -95037123 + L1Md_F2 LINE L1 6428 6563 -19 1 1023 198 0 0 0 chr5 57500139 57500161 -95037098 + (GAAA)n Simple_repeat Simple_repeat 3 24 0 2 1023 858 91 0 0 chr5 57500161 57500281 -95036978 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 3 1023 195 42 0 0 chr5 57500282 57500306 -95036953 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1023 438 20 0 0 chr5 57501119 57501170 -95036089 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1023 3325 169 41 11 chr5 57501430 57502059 -95035200 + Lx LINE L1 6004 6651 -3 6 1023 1281 272 99 28 chr5 57502553 57503245 -95034014 + RMER1B Other Other 2 448 -618 7 1023 351 0 0 0 chr5 57503291 57503330 -95033929 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 8 1023 180 238 0 0 chr5 57503333 57503396 -95033863 + A-rich Low_complexity Low_complexity 1 63 0 9 1023 1713 247 107 21 chr5 57503493 57503865 -95033394 + Lx9 LINE L1 6987 7367 -277 1 1023 2445 115 0 0 chr5 57503865 57504222 -95033037 + L1_Mus4 LINE L1 6276 6632 -4 1 1023 1713 247 107 21 chr5 57504222 57504320 -95032939 + Lx9 LINE L1 7368 7464 -180 1 1023 454 31 31 0 chr5 57504320 57504384 -95032875 + (CA)n Simple_repeat Simple_repeat 2 67 0 1 1023 1713 247 107 21 chr5 57504384 57504517 -95032742 + Lx9 LINE L1 7465 7641 -3 1 1023 339 289 117 24 chr5 57504511 57504759 -95032500 + L1MA6 LINE L1 5593 5863 -437 1 1023 743 287 72 11 chr5 57505216 57505494 -95031765 - Lx3C LINE L1 -2 6974 6680 1 1023 2193 186 13 50 chr5 57505505 57506030 -95031229 + Lx2B LINE L1 5844 6349 -651 1 1023 32 43 0 0 chr5 57506246 57506292 -95030967 + AT_rich Low_complexity Low_complexity 1 46 0 1 1023 333 0 0 0 chr5 57506532 57506569 -95030690 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1 1023 605 290 22 52 chr5 57506654 57506923 -95030336 + Lx9 LINE L1 6821 7081 -563 1 1023 290 289 97 82 chr5 57507018 57507286 -95029973 + Lx9 LINE L1 7319 7590 -54 1 1023 864 143 6 6 chr5 57507918 57508087 -95029172 + Lx3_Mus LINE L1 6841 7009 0 1 1023 1815 244 46 39 chr5 57508356 57508842 -95028417 + RMER19C LTR ERVK 76 606 -5 2 1023 216 0 0 0 chr5 57509437 57509461 -95027798 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1023 658 271 0 32 chr5 57509482 57509638 -95027621 + RSINE1 SINE B4 13 163 -2 2 1023 42 48 0 0 chr5 57509767 57509830 -95027429 + AT_rich Low_complexity Low_complexity 1 63 0 2 1023 21 0 0 0 chr5 57511621 57511642 -95025617 + AT_rich Low_complexity Low_complexity 1 21 0 2 1023 181 180 65 8 chr5 57511764 57511887 -95025372 + (TCTA)n Simple_repeat Simple_repeat 4 133 0 2 1023 662 55 9 43 chr5 57511906 57512021 -95025238 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 2 1023 6707 116 11 28 chr5 57513006 57514556 -95022703 + L1_Mus3 LINE L1 5094 6617 -21 2 1023 4165 59 6 9 chr5 57514555 57515088 -95022171 + L1_Mus1 LINE L1 5671 6201 -366 2 1023 1135 74 0 0 chr5 57515088 57515279 -95021980 + L1_Mus1 LINE L1 6410 6567 0 2 1023 296 155 0 14 chr5 57515865 57515937 -95021322 + (TA)n Simple_repeat Simple_repeat 2 72 0 2 1023 33 43 0 0 chr5 57515947 57515994 -95021265 + AT_rich Low_complexity Low_complexity 1 47 0 3 1023 608 191 160 0 chr5 57516476 57516664 -95020595 - Lx9 LINE L1 -1 7643 7426 3 1023 360 0 0 0 chr5 57517110 57517150 -95020109 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1023 35 24 0 0 chr5 57517606 57517648 -95019611 + AT_rich Low_complexity Low_complexity 1 42 0 3 1023 356 236 9 0 chr5 57517737 57517847 -95019412 + (TA)n Simple_repeat Simple_repeat 1 111 0 3 1023 259 265 0 0 chr5 57517929 57517997 -95019262 + Lx9 LINE L1 7360 7427 -217 3 1023 468 35 0 0 chr5 57518496 57518554 -95018705 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1023 1658 292 145 34 chr5 57518561 57519686 -95017573 - RMER1A Other Other -303 727 1 3 1023 213 39 0 0 chr5 57520146 57520172 -95017087 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 1023 555 56 0 0 chr5 57520277 57520348 -95016911 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1023 1944 43 0 0 chr5 57521935 57522170 -95015089 - L1_Mus3 LINE L1 -728 5910 5676 4 1023 1838 91 11 8 chr5 57522170 57522437 -95014822 + L1_Mus2 LINE L1 6299 6566 0 4 1023 3060 117 54 20 chr5 57522498 57522780 -95014479 + Lx2 LINE L1 6439 6724 -273 4 1023 324 0 0 0 chr5 57522780 57522816 -95014443 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 4 1023 3060 117 54 20 chr5 57522816 57523073 -95014186 + Lx2 LINE L1 6725 6995 -2 4 1023 554 319 93 18 chr5 57523087 57523486 -95013773 + MER57C2 LTR ERV1 5 433 -1 4 1023 8915 42 1 0 chr5 57523510 57524633 -95012626 + L1_Mm LINE L1 1679 2802 -3081 4 1023 4387 59 0 0 chr5 57524773 57525318 -95011941 - L1Md_F2 LINE L1 -13 6569 6025 4 1023 578 58 11 0 chr5 57525509 57525596 -95011663 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 1023 977 308 67 16 chr5 57525627 57526003 -95011256 - MTD LTR MaLR -14 407 1 4 1023 23 0 0 0 chr5 57526346 57526369 -95010890 + AT_rich Low_complexity Low_complexity 1 23 0 4 1023 665 71 0 20 chr5 57527245 57527346 -95009913 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 5 1023 1588 128 117 3 chr5 57527495 57527778 -95009481 - Lx LINE L1 -7 6647 6333 5 1023 331 340 28 37 chr5 57528347 57528561 -95008698 + Tigger5 DNA MER2_type 28 239 -2167 5 1023 243 203 67 13 chr5 57528562 57528637 -95008622 + Tigger5 DNA MER2_type 2293 2371 -35 5 1023 315 0 0 0 chr5 57529642 57529677 -95007582 + (TAA)n Simple_repeat Simple_repeat 1 35 0 5 1023 24 32 0 0 chr5 57529964 57529995 -95007264 + AT_rich Low_complexity Low_complexity 1 31 0 5 1023 291 54 0 0 chr5 57530215 57530252 -95007007 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1023 21 0 0 0 chr5 57530265 57530286 -95006973 + AT_rich Low_complexity Low_complexity 1 21 0 5 1023 606 14 0 0 chr5 57530304 57530375 -95006884 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1023 238 196 0 21 chr5 57530777 57530824 -95006435 + (TCTG)n Simple_repeat Simple_repeat 2 47 0 5 1023 1132 288 75 41 chr5 57530825 57531335 -95005924 + RMER5 LTR ERV1 8 534 0 5 1023 456 336 77 48 chr5 57532514 57532898 -95004361 + MTB LTR MaLR 1 405 -14 6 1023 2494 256 19 48 chr5 57533047 57533801 -95003458 - Lx7 LINE L1 -2 7694 6963 6 1023 783 321 68 61 chr5 57533822 57534591 -95002668 + MTC-int LTR MaLR 150 914 -184 6 1023 1918 298 54 72 chr5 57534625 57535600 -95001659 - Lx5 LINE L1 0 7058 6170 6 1023 1328 131 207 8 chr5 57535604 57535870 -95001389 - ORR1A2 LTR MaLR -8 319 1 6 1023 649 206 27 137 chr5 57535872 57536133 -95001126 - Lx5 LINE L1 -1343 6117 5864 6 1023 235 175 0 0 chr5 57536244 57536284 -95000975 + Lx7 LINE L1 7250 7289 -407 6 1023 327 49 0 0 chr5 57536286 57536327 -95000932 + (GA)n Simple_repeat Simple_repeat 2 42 0 6 1023 24 0 0 0 chr5 57537331 57537355 -94999904 + AT_rich Low_complexity Low_complexity 1 24 0 6 1023 22 0 0 0 chr5 57537666 57537688 -94999571 + AT_rich Low_complexity Low_complexity 1 22 0 6 127 38363 38 4 6 chr5 57537734 57543924 -94993335 - L1Md_T LINE L1 -2 6580 413 6 1024 1035 290 83 16 chr5 57544225 57544600 -94992659 + MTD LTR MaLR 6 405 -14 7 1024 231 328 0 0 chr5 57544961 57545019 -94992240 + L2b LINE L2 3318 3375 0 7 1024 264 30 0 0 chr5 57545476 57545509 -94991750 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1024 1194 49 0 0 chr5 57545510 57545654 -94991605 - B1_Mm SINE Alu -2 145 2 7 1024 1808 209 44 29 chr5 57545663 57546076 -94991183 - MTC LTR MaLR 0 421 3 7 1024 23 0 0 0 chr5 57546607 57546630 -94990629 + AT_rich Low_complexity Low_complexity 1 23 0 7 1024 2306 162 59 0 chr5 57546631 57547039 -94990220 - Lx3B LINE L1 -3 6970 6539 7 1024 782 101 0 0 chr5 57547039 57547148 -94990111 - Lx3B LINE L1 -712 5942 5834 7 1024 5450 171 25 8 chr5 57547179 57548187 -94989072 + Lx2 LINE L1 5970 6994 -3 7 1024 1311 256 118 12 chr5 57548337 57548760 -94988499 - Lx2B LINE L1 -8 6992 6525 7 1024 255 323 8 0 chr5 57548759 57548883 -94988376 - L1_Mur3 LINE L1 -6717 995 871 7 1024 924 323 53 20 chr5 57548896 57549345 -94987914 - L1_Mur3 LINE L1 -6925 787 324 7 1024 198 0 0 0 chr5 57550637 57550659 -94986600 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1024 25 51 0 0 chr5 57550965 57551004 -94986255 + AT_rich Low_complexity Low_complexity 1 39 0 8 1024 213 229 16 0 chr5 57551065 57551126 -94986133 + (CAAA)n Simple_repeat Simple_repeat 3 64 0 8 1024 1459 153 20 0 chr5 57552320 57552575 -94984684 - Lx2B LINE L1 -17 6983 6724 8 1024 2441 137 80 5 chr5 57552575 57552999 -94984260 + Lx2 LINE L1 6254 6709 -288 8 1024 30 0 0 0 chr5 57553002 57553032 -94984227 + AT_rich Low_complexity Low_complexity 1 30 0 8 1024 185 0 40 0 chr5 57554269 57554294 -94982965 + (TAA)n Simple_repeat Simple_repeat 1 26 0 8 1024 328 318 45 0 chr5 57554770 57554858 -94982401 + B1_Mur1 SINE Alu 36 127 -22 8 1024 238 62 0 0 chr5 57555287 57555319 -94981940 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1024 480 208 0 0 chr5 57555319 57555425 -94981834 + (TA)n Simple_repeat Simple_repeat 2 107 0 8 1024 189 74 0 0 chr5 57555516 57555543 -94981716 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9 1024 522 323 125 39 chr5 57555908 57555993 -94981266 + MTEb LTR MaLR 6 86 -293 9 1024 2094 64 0 0 chr5 57555993 57556259 -94981000 + L1_Mus1 LINE L1 6302 6567 0 9 1024 528 323 125 39 chr5 57556259 57556405 -94980854 + MTEb LTR MaLR 87 257 -122 9 1024 1053 328 27 43 chr5 57556421 57556937 -94980322 - Lx8 LINE L1 -535 6938 6431 9 1024 1129 69 0 0 chr5 57557625 57557770 -94979489 + B1_Mm SINE Alu 3 147 0 9 1024 369 174 0 0 chr5 57557809 57557878 -94979381 + (TA)n Simple_repeat Simple_repeat 1 69 0 9 1024 510 296 119 31 chr5 57557878 57558472 -94978787 - L1MC2 LINE L1 -265 6079 5432 9 1024 405 67 0 74 chr5 57558740 57558821 -94978438 + (TTTTC)n Simple_repeat Simple_repeat 2 76 0 9 1024 2973 110 40 48 chr5 57558842 57559368 -94977891 - Lx3_Mus LINE L1 -1 7008 6487 9 1024 2972 126 8 13 chr5 57559368 57559836 -94977423 + Lx3_Mus LINE L1 6280 6745 -264 9 1024 3508 57 0 2 chr5 57559815 57560258 -94977001 + L1Md_F2 LINE L1 5145 5586 -297 1 1024 7733 59 1 6 chr5 57560258 57561259 -94976000 + L1Md_F2 LINE L1 5587 6582 0 1 1024 1535 130 32 21 chr5 57561259 57561513 -94975746 + Lx3_Mus LINE L1 6724 6986 -23 9 1024 1694 65 0 17 chr5 57561513 57561748 -94975511 + L1Md_F2 LINE L1 6339 6569 -13 1 1024 1535 130 32 21 chr5 57561748 57561776 -94975483 + Lx3_Mus LINE L1 6987 7009 0 9 1024 22 35 0 0 chr5 57561786 57561815 -94975444 + AT_rich Low_complexity Low_complexity 1 29 0 1 1024 22 0 0 0 chr5 57561993 57562015 -94975244 + AT_rich Low_complexity Low_complexity 1 22 0 1 1024 228 270 0 11 chr5 57562173 57562263 -94974996 - L1M5 LINE L1 -941 5503 5415 1 1024 2722 89 7 42 chr5 57563553 57563734 -94973525 + MTA_Mm LTR MaLR 1 181 -215 1 1024 4643 24 0 0 chr5 57563734 57564276 -94972983 + L1Md_A LINE L1 6041 6582 0 1 1024 2722 89 7 42 chr5 57564276 57564504 -94972755 + MTA_Mm LTR MaLR 182 396 0 1 1024 474 282 75 79 chr5 57564602 57564856 -94972403 + RMER15 LTR ERVL 310 562 -13 1 1024 226 333 87 65 chr5 57564863 57565001 -94972258 - MIR SINE MIR -65 203 63 1 1024 983 275 36 18 chr5 57565609 57565998 -94971261 + Lx7 LINE L1 5791 6186 -1510 1 1024 3915 204 13 3 chr5 57565996 57566858 -94970401 - L1_Mur2 LINE L1 -1330 4547 3678 1 1024 250 45 23 0 chr5 57566855 57566899 -94970360 + L1Md_T LINE L1 6538 6582 0 1 1024 1254 160 14 0 chr5 57566896 57567108 -94970151 + L1_Mur1 LINE L1 5359 5573 -313 1 1024 726 247 20 56 chr5 57567120 57567369 -94969890 + Lx2B LINE L1 6757 6996 -4 1 1024 527 160 94 0 chr5 57567386 57567492 -94969767 - L1_Mur2 LINE L1 -2198 3679 3564 1 1024 310 42 54 40 chr5 57568527 57568601 -94968658 + (CAAAA)n Simple_repeat Simple_repeat 2 76 0 1 1024 513 0 0 0 chr5 57568690 57568747 -94968512 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1024 282 29 0 0 chr5 57568747 57568781 -94968478 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1024 3308 168 5 51 chr5 57568885 57569265 -94967994 - L1_Mur2 LINE L1 -2393 3493 3148 1 1024 1083 95 0 0 chr5 57569265 57569412 -94967847 - B1_Mus1 SINE Alu 0 148 2 1 1024 3308 168 5 51 chr5 57569412 57569778 -94967481 - L1_Mur2 LINE L1 -2739 3147 2781 1 1024 572 97 32 0 chr5 57569782 57569875 -94967384 - L1_Mur2 LINE L1 -3311 2575 2480 1 1024 269 119 0 0 chr5 57569894 57569936 -94967323 + L1_Mur1 LINE L1 1571 1612 -4274 1 1024 782 213 31 21 chr5 57569932 57570124 -94967135 + Lx5 LINE L1 6857 7050 0 1 1024 186 43 0 0 chr5 57571820 57571843 -94965416 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1 1024 308 103 0 56 chr5 57572855 57572868 -94964391 + polypyrimidine Low_complexity Low_complexity 57 68 0 1 1024 225 94 0 0 chr5 57572868 57572900 -94964359 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 1 1024 308 103 0 56 chr5 57572900 57572958 -94964301 + CT-rich Low_complexity Low_complexity 1 56 0 1 1024 1581 211 77 75 chr5 57573176 57573314 -94963945 + MTC LTR MaLR 6 120 -301 1 1024 182 62 0 30 chr5 57573314 57573347 -94963912 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1 1024 1581 211 77 75 chr5 57573347 57573623 -94963636 + MTC LTR MaLR 121 421 0 1 1024 1816 74 8 4 chr5 57574316 57574574 -94962685 - L1_Mus3 LINE L1 -7 6631 6373 1 1024 420 366 0 0 chr5 57574620 57574762 -94962497 - ID_B1 SINE B4 -1 223 82 1 1024 883 223 31 31 chr5 57576395 57576617 -94960642 - URR1B DNA MER1_type 0 225 4 1 1024 22 0 0 0 chr5 57578469 57578491 -94958768 + AT_rich Low_complexity Low_complexity 1 22 0 1 1024 916 331 81 33 chr5 57578735 57579069 -94958190 - ORR1D2 LTR MaLR -18 352 3 1 1024 264 302 43 8 chr5 57580775 57580892 -94956367 + (TATATG)n Simple_repeat Simple_repeat 5 125 0 1 1024 534 91 10 20 chr5 57580908 57581009 -94956250 + (TA)n Simple_repeat Simple_repeat 1 100 0 1 1024 1433 221 26 29 chr5 57581429 57581773 -94955486 - RMER6C LTR ERVK 0 690 348 1 1024 269 317 38 38 chr5 57581756 57581861 -94955398 - B1_Mm SINE Alu -40 107 3 1 1024 442 256 15 114 chr5 57581861 57581961 -94955298 - MT2B LTR ERVL -341 260 174 1 1024 364 213 67 0 chr5 57581939 57582014 -94955245 - RMER6C LTR ERVK -579 111 32 1 1024 31 76 0 0 chr5 57582554 57582620 -94954639 + AT_rich Low_complexity Low_complexity 1 66 0 1 1024 1026 88 0 0 chr5 57582989 57583126 -94954133 + Lx LINE L1 5609 5745 -909 1 1024 1799 238 25 6 chr5 57583112 57583598 -94953661 - L1_Mur2 LINE L1 -293 5584 5090 1 1024 1953 239 30 100 chr5 57583591 57583892 -94953367 + L1_Mur3 LINE L1 4447 4720 -1160 1 1024 180 0 0 0 chr5 57583892 57583912 -94953347 + (TA)n Simple_repeat Simple_repeat 1 20 0 1 1024 1953 237 36 41 chr5 57583912 57584278 -94952981 + L1_Mur3 LINE L1 4721 5091 -789 1 1024 261 312 26 78 chr5 57585072 57585225 -94952034 + MTEa LTR MaLR 204 348 -31 1 1024 23 0 0 0 chr5 57585724 57585747 -94951512 + AT_rich Low_complexity Low_complexity 1 23 0 1 1024 1216 317 50 6 chr5 57586245 57586607 -94950652 + MTE2b LTR MaLR 2 379 0 1 1024 321 325 43 43 chr5 57586792 57587001 -94950258 - L1MD LINE L1 -2245 5750 5542 1 1024 651 262 0 50 chr5 57587144 57587325 -94949934 + Lx6 LINE L1 7278 7449 -11 1 1024 234 341 55 39 chr5 57587490 57587618 -94949641 - MLT1D LTR MaLR -312 193 64 1 1024 427 366 123 36 chr5 57588647 57588899 -94948360 + B4 SINE B4 9 282 -10 1 1024 212 316 13 0 chr5 57588908 57588984 -94948275 + (CATA)n Simple_repeat Simple_repeat 2 78 0 1 1024 894 222 20 19 chr5 57589594 57589861 -94947398 + L1M2 LINE L1 5286 5559 -741 1 1024 348 24 0 0 chr5 57590215 57590256 -94947003 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1024 41 21 0 0 chr5 57592142 57592190 -94945069 + AT_rich Low_complexity Low_complexity 1 48 0 1 1024 27 49 0 0 chr5 57592230 57592271 -94944988 + AT_rich Low_complexity Low_complexity 1 41 0 1 1024 195 146 0 0 chr5 57592333 57592374 -94944885 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1024 216 0 0 0 chr5 57592578 57592602 -94944657 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1024 225 0 0 0 chr5 57592679 57592704 -94944555 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 1024 3726 162 47 2 chr5 57593017 57593833 -94943426 - Lx2 LINE L1 -51 6949 5996 1 1024 818 233 114 0 chr5 57593869 57594071 -94943188 + URR1A DNA MER1_type 2 226 0 1 1024 3442 159 5 2 chr5 57595140 57595737 -94941522 - L1_Mur2 LINE L1 -1767 4110 3512 1 1024 8495 147 16 6 chr5 57595730 57598008 -94939251 + L1_Mus4 LINE L1 4330 6633 -3 1 1024 576 53 0 0 chr5 57598335 57598411 -94938848 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1024 203 62 0 86 chr5 57598470 57598505 -94938754 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 1 1024 22 0 0 0 chr5 57598809 57598831 -94938428 + AT_rich Low_complexity Low_complexity 1 22 0 1 1024 25 0 0 0 chr5 57598837 57598862 -94938397 + AT_rich Low_complexity Low_complexity 1 25 0 1 1024 3547 88 10 2 chr5 57600206 57600687 -94936572 + L1_Mus2 LINE L1 6082 6566 0 1 1024 4986 47 2 3 chr5 57601152 57601770 -94935489 + L1Md_T LINE L1 5966 6582 0 1 1024 471 123 94 4 chr5 57603918 57604020 -94933239 - L1M2 LINE L1 -2832 3311 3197 1 1024 518 290 15 8 chr5 57605035 57605167 -94932092 - B1_Mur1 SINE Alu 0 149 17 1 1024 500 317 72 45 chr5 57605344 57605470 -94931789 - L1_Rod LINE L1 -1322 4558 4444 1 1024 270 0 0 0 chr5 57605470 57605500 -94931759 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1 1024 1036 148 0 26 chr5 57605500 57605694 -94931565 - Lx3A LINE L1 -13 6968 6780 1 1024 819 256 72 19 chr5 57605694 57606038 -94931221 - L1_Rod LINE L1 -1437 4443 4075 1 1024 3272 33 0 0 chr5 57606045 57606439 -94930820 - L1Md_F2 LINE L1 -524 6058 5665 1 1024 4114 61 2 4 chr5 57606439 57606964 -94930295 + L1Md_F2 LINE L1 6055 6578 -4 1 1024 264 254 0 48 chr5 57606977 57607039 -94930220 + RMER13B LTR ERVK 850 908 0 1 1024 1178 206 117 0 chr5 57607474 57607731 -94929528 - ORR1C2 LTR MaLR -2 382 96 1 1024 359 268 128 47 chr5 57607751 57607900 -94929359 - ORR1C2-int LTR MaLR -588 782 622 1 1024 398 336 38 30 chr5 57607950 57608082 -94929177 + ID_B1 SINE B4 87 219 -5 1 1024 1004 39 0 0 chr5 57608257 57608384 -94928875 - B1_Mm SINE Alu -19 128 2 1 1024 2075 248 21 167 chr5 57608388 57609569 -94927690 - L1_Rod LINE L1 -1791 4056 3048 1 1024 845 292 118 55 chr5 57609571 57609988 -94927271 + Lx9 LINE L1 6907 7349 -295 1 1024 31 58 0 0 chr5 57610042 57610094 -94927165 + AT_rich Low_complexity Low_complexity 1 52 0 1 1024 22 0 0 0 chr5 57610405 57610427 -94926832 + AT_rich Low_complexity Low_complexity 1 22 0 1 1024 210 283 0 0 chr5 57610906 57610966 -94926293 - L2 LINE L2 -940 2479 2420 1 1024 2654 106 8 15 chr5 57611344 57611746 -94925513 - MTB LTR MaLR 0 400 2 1 1024 450 327 30 6 chr5 57611880 57612049 -94925210 + Lx8 LINE L1 6310 6482 -991 1 1024 639 37 0 0 chr5 57612049 57612131 -94925128 + (TTTTTA)n Simple_repeat Simple_repeat 4 85 0 1 1024 1194 54 0 0 chr5 57612137 57612284 -94924975 - B1_Mm SINE Alu 0 147 1 1 1024 811 313 122 21 chr5 57612303 57612721 -94924538 + Lx8 LINE L1 6496 6955 -518 1 1024 2846 53 0 0 chr5 57612957 57613299 -94923960 + ORR1A1 LTR MaLR 1 342 -4 1 1024 182 265 87 14 chr5 57613318 57613387 -94923872 + L3 LINE CR1 162 235 -4254 1 1024 34 42 0 0 chr5 57613448 57613496 -94923763 + AT_rich Low_complexity Low_complexity 1 48 0 1 1024 1263 249 48 3 chr5 57614248 57614583 -94922676 + Lx9 LINE L1 6760 7109 -535 1 1024 1098 212 98 77 chr5 57614602 57614940 -94922319 + Lx9 LINE L1 7173 7517 -127 1 1024 24 0 0 0 chr5 57614993 57615017 -94922242 + AT_rich Low_complexity Low_complexity 1 24 0 1 1024 354 285 101 34 chr5 57615729 57615878 -94921381 - HAL1-3A_ME LINE L1 -724 2134 1976 1 1024 203 304 0 0 chr5 57615885 57615954 -94921305 + CT-rich Low_complexity Low_complexity 2 70 0 1 1024 323 105 0 17 chr5 57615979 57616037 -94921222 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1024 529 355 57 29 chr5 57616095 57616643 -94920616 + L1MA6 LINE L1 5712 6274 -26 1 1024 358 356 84 88 chr5 57616645 57616953 -94920306 + MLT2B2 LTR ERVL 190 496 -19 1 1024 580 162 50 0 chr5 57617593 57617692 -94919567 + B2_Mm2 SINE B2 4 107 -88 1 1024 21 0 0 0 chr5 57617695 57617716 -94919543 + AT_rich Low_complexity Low_complexity 1 21 0 1 1024 33 0 0 0 chr5 57617788 57617821 -94919438 + AT_rich Low_complexity Low_complexity 1 33 0 1 1024 234 191 0 0 chr5 57618883 57618930 -94918329 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1024 279 310 80 40 chr5 57618973 57619124 -94918135 + L1M4 LINE L1 5435 5591 -583 1 1024 22 0 0 0 chr5 57620053 57620075 -94917184 + AT_rich Low_complexity Low_complexity 1 22 0 1 1024 449 274 0 111 chr5 57622458 57622602 -94914657 + B1_Mur2 SINE Alu 13 140 -9 2 1024 231 36 0 0 chr5 57622663 57622691 -94914568 + (GGAGAA)n Simple_repeat Simple_repeat 6 33 0 2 1024 218 81 27 0 chr5 57624435 57624472 -94912787 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 2 1024 471 18 0 0 chr5 57624928 57624984 -94912275 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1024 404 344 0 0 chr5 57625016 57625138 -94912121 - B3A SINE B2 -66 132 11 2 1024 4463 70 7 3 chr5 57625366 57625958 -94911301 + L1Md_F2 LINE L1 5985 6578 -4 2 1024 334 248 10 67 chr5 57626442 57626546 -94910713 + B3A SINE B2 5 102 -96 2 1024 387 0 0 0 chr5 57627340 57627383 -94909876 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1024 24 32 0 0 chr5 57627872 57627903 -94909356 + AT_rich Low_complexity Low_complexity 1 31 0 2 1024 1310 234 54 8 chr5 57627904 57628296 -94908963 - Lx9 LINE L1 -1 7643 7234 2 1024 590 256 16 0 chr5 57628467 57628592 -94908667 - Lx9 LINE L1 -424 7220 7094 2 1024 8048 60 2 2 chr5 57629227 57630962 -94906297 - L1Md_F2 LINE L1 0 6582 4848 2 1024 183 250 98 24 chr5 57631212 57631294 -94905965 + L2c LINE L2 3217 3304 -83 2 1024 313 242 141 11 chr5 57632047 57632139 -94905120 - Lx8 LINE L1 -294 7179 7076 2 1024 3041 131 71 0 chr5 57632485 57632981 -94904278 + Lx3A LINE L1 6445 6975 -6 2 1024 26 0 0 0 chr5 57632982 57633008 -94904251 + AT_rich Low_complexity Low_complexity 1 26 0 2 1024 566 313 132 32 chr5 57635365 57635797 -94901462 - RLTR12B LTR ERVK -6 522 48 2 1024 28 48 0 0 chr5 57636175 57636217 -94901042 + AT_rich Low_complexity Low_complexity 1 42 0 2 1024 31243 83 25 12 chr5 57636518 57641682 -94895577 + L1Md_F2 LINE L1 351 5585 -298 2 1024 8039 51 0 0 chr5 57641683 57642667 -94894592 + L1Md_F2 LINE L1 5587 6570 -12 2 1024 198 0 0 0 chr5 57642700 57642722 -94894537 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2 1024 632 77 0 11 chr5 57642720 57642812 -94894447 + (GAAAA)n Simple_repeat Simple_repeat 2 92 0 2 1024 261 0 0 0 chr5 57643620 57643649 -94893610 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1024 27 62 0 0 chr5 57643942 57643990 -94893269 + AT_rich Low_complexity Low_complexity 1 48 0 2 1024 316 356 98 64 chr5 57644241 57644568 -94892691 + ORR1E LTR MaLR 13 350 -9 2 1024 856 351 113 5 chr5 57644689 57645288 -94891971 + Lx8 LINE L1 6709 7372 -101 2 1024 26 50 0 0 chr5 57645593 57645633 -94891626 + AT_rich Low_complexity Low_complexity 1 40 0 2 1024 540 309 15 64 chr5 57645811 57646015 -94891244 + B3A SINE B2 5 198 0 2 1024 24 67 0 0 chr5 57646275 57646320 -94890939 + AT_rich Low_complexity Low_complexity 1 45 0 2 1024 328 221 22 34 chr5 57647335 57647424 -94889835 - RMER17C LTR ERVK 0 410 323 2 1024 28 61 0 0 chr5 57647452 57647501 -94889758 + AT_rich Low_complexity Low_complexity 1 49 0 2 1024 1052 99 0 0 chr5 57647546 57647687 -94889572 + B1_Mus1 SINE Alu 2 142 -6 2 1024 258 56 0 0 chr5 57647690 57647726 -94889533 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1024 1021 232 98 0 chr5 57647727 57647973 -94889286 + ORR1C1 LTR MaLR 16 285 -93 2 1024 256 299 55 18 chr5 57647986 57648095 -94889164 + Lx7 LINE L1 7582 7694 -2 2 1024 207 349 98 23 chr5 57650594 57650767 -94886492 - MIR SINE MIR -71 191 6 2 1024 364 267 8 55 chr5 57650823 57650950 -94886309 + Lx5 LINE L1 6913 7033 -17 2 1024 652 71 20 0 chr5 57650955 57651054 -94886205 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 2 1024 687 305 119 13 chr5 57651561 57651873 -94885386 - MTEa LTR MaLR -15 364 20 2 1024 347 355 32 0 chr5 57653337 57653492 -94883767 - Lx LINE L1 -331 7129 6970 2 1024 745 199 0 7 chr5 57653537 57653674 -94883585 - Lx LINE L1 -569 6891 6756 2 1024 402 21 0 0 chr5 57653677 57653724 -94883535 + (TTTTC)n Simple_repeat Simple_repeat 4 50 0 2 1024 33 66 0 0 chr5 57653741 57653802 -94883457 + AT_rich Low_complexity Low_complexity 1 61 0 2 1024 351 0 0 0 chr5 57654102 57654141 -94883118 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2 1024 2455 184 33 0 chr5 57654388 57654867 -94882392 - Lx2 LINE L1 0 6997 6503 2 1024 478 215 11 0 chr5 57654867 57654960 -94882299 + 4.5SRNA scRNA scRNA 1 94 0 2 1024 2560 144 47 5 chr5 57655399 57655825 -94881434 - Lx LINE L1 -20 6634 6191 2 1024 1889 229 9 20 chr5 57656087 57656545 -94880714 + L1VL4 LINE L1 293 745 -5557 2 1024 2738 176 45 4 chr5 57656546 57656984 -94880275 + L1_Mm LINE L1 4167 4627 -1256 2 1024 450 0 0 0 chr5 57656984 57657034 -94880225 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2 1024 2738 176 45 4 chr5 57657034 57657152 -94880107 + L1_Mm LINE L1 4628 4746 -1137 2 1024 29552 90 44 49 chr5 57657148 57661049 -94876210 + L1Md_F2 LINE L1 205 4262 -2320 2 1024 1603 111 19 38 chr5 57661049 57661311 -94875948 + RLTR45 LTR ERVK 1 257 -225 2 1024 29552 90 44 49 chr5 57661311 57663124 -94874135 + L1Md_F2 LINE L1 4263 6150 -432 2 1024 444 68 14 0 chr5 57663124 57663198 -94874061 + L1Md_F2 LINE L1 6507 6581 -1 2 1024 6934 143 11 9 chr5 57663198 57665095 -94872164 + L1_Mus4 LINE L1 4737 6631 -5 2 1024 211 118 38 38 chr5 57666121 57666174 -94871085 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 2 1024 26 30 0 0 chr5 57666213 57666246 -94871013 + AT_rich Low_complexity Low_complexity 1 33 0 2 1024 625 204 0 0 chr5 57667335 57667448 -94869811 + RMER6B LTR ERVK 82 194 -267 2 1024 24 32 0 0 chr5 57667620 57667651 -94869608 + AT_rich Low_complexity Low_complexity 1 31 0 2 1024 1876 214 14 88 chr5 57667991 57668477 -94868782 + RMER6B LTR ERVK 12 461 0 2 1024 2328 69 66 0 chr5 57668551 57668868 -94868391 + Lx3_Mus LINE L1 6672 7009 0 2 1024 444 223 0 0 chr5 57668898 57669001 -94868258 + (TA)n Simple_repeat Simple_repeat 1 103 0 2 1024 264 30 0 0 chr5 57669229 57669262 -94867997 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1024 379 157 11 11 chr5 57669263 57669353 -94867906 + GA-rich Low_complexity Low_complexity 2 91 0 2 1024 526 330 98 29 chr5 57669462 57669632 -94867627 - Lx6 LINE L1 -80 7380 7191 2 1024 821 135 13 13 chr5 57669632 57669790 -94867469 + L1_Mus3 LINE L1 6481 6638 0 2 1024 526 330 98 29 chr5 57669790 57669894 -94867365 - Lx6 LINE L1 -270 7190 7088 2 1024 525 253 60 6 chr5 57669880 57670047 -94867212 + Lx6 LINE L1 7284 7459 -1 2 1024 34 42 0 0 chr5 57670984 57671032 -94866227 + AT_rich Low_complexity Low_complexity 1 48 0 2 1024 34 55 0 0 chr5 57671076 57671131 -94866128 + AT_rich Low_complexity Low_complexity 1 55 0 2 15 1786 295 34 12 chr5 57671424 57671788 -94865471 + Lx9 LINE L1 6449 6818 -826 2 1025 302 0 26 0 chr5 57671788 57671826 -94865433 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1025 1786 295 34 12 chr5 57671826 57672047 -94865212 + Lx9 LINE L1 6819 7046 -598 2 1025 207 0 0 0 chr5 57673112 57673135 -94864124 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1025 2796 43 0 3 chr5 57673323 57673674 -94863585 - L1Md_F2 LINE L1 -1 6581 6232 2 1025 24 0 0 0 chr5 57675715 57675739 -94861520 + AT_rich Low_complexity Low_complexity 1 24 0 2 1025 598 298 58 43 chr5 57675852 57676059 -94861200 + B3 SINE B2 6 215 -1 2 1025 1590 86 9 9 chr5 57676524 57676711 -94860548 + L1_Mm LINE L1 5400 5586 -297 2 1025 7490 61 12 7 chr5 57676711 57677696 -94859563 + L1Md_F2 LINE L1 5587 6576 -6 2 1025 1590 86 9 9 chr5 57677696 57677732 -94859527 + L1_Mm LINE L1 5587 5623 -260 2 1025 198 103 0 0 chr5 57677878 57677907 -94859352 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1025 24 0 0 0 chr5 57678196 57678220 -94859039 + AT_rich Low_complexity Low_complexity 1 24 0 2 1025 335 308 74 43 chr5 57678391 57678554 -94858705 - Tigger15a DNA TcMar -438 277 110 2 1025 1356 272 92 81 chr5 57678934 57679411 -94857848 - RLTR40 LTR ERVK -35 782 302 2 1025 599 39 13 0 chr5 57679411 57679489 -94857770 + (TC)n Simple_repeat Simple_repeat 1 79 0 2 1025 1356 272 92 81 chr5 57679489 57679728 -94857531 - RLTR40 LTR ERVK -516 301 58 2 1025 1962 226 13 38 chr5 57679817 57680294 -94856965 + RMER19C LTR ERVK 138 602 -9 2 1025 545 61 10 29 chr5 57680818 57680920 -94856339 + (CAAAA)n Simple_repeat Simple_repeat 1 100 0 2 1025 1307 61 50 6 chr5 57681115 57681295 -94855964 - B2_Mm2 SINE B2 -6 189 2 2 1025 540 0 0 0 chr5 57681613 57681673 -94855586 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1025 435 38 0 0 chr5 57681673 57681725 -94855534 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1025 198 191 0 0 chr5 57682366 57682413 -94854846 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1025 26 30 0 0 chr5 57682418 57682451 -94854808 + AT_rich Low_complexity Low_complexity 1 33 0 2 1025 1593 211 83 28 chr5 57682467 57682866 -94854393 - MTC LTR MaLR 0 421 1 2 1025 1020 90 21 0 chr5 57683027 57683171 -94854088 - B1_Mus1 SINE Alu 0 148 2 2 1025 508 83 4 63 chr5 57683461 57683563 -94853696 + B1_Mur4 SINE Alu 28 150 0 2 1025 185 83 0 27 chr5 57683584 57683621 -94853638 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 2 1025 339 200 120 0 chr5 57683801 57683876 -94853383 - Lx4B LINE L1 -255 6803 6720 2 1025 711 134 9 0 chr5 57684267 57684379 -94852880 + RMER6C LTR ERVK 578 690 0 2 1025 583 342 27 5 chr5 57685648 57685833 -94851426 - B4 SINE B4 -6 286 98 2 1025 182 263 153 48 chr5 57686688 57686812 -94850447 - MIR SINE MIR -1 261 125 2 1025 336 155 0 0 chr5 57686984 57687055 -94850204 - Lx3A LINE L1 -7 6974 6904 2 1025 871 111 0 56 chr5 57687505 57687648 -94849611 - B1_Mm SINE Alu -7 140 6 2 1025 33 0 0 0 chr5 57688100 57688133 -94849126 + AT_rich Low_complexity Low_complexity 1 33 0 2 1025 2853 215 47 9 chr5 57688216 57688797 -94848462 - Lx5 LINE L1 -3 7047 6445 2 1025 1573 150 29 14 chr5 57688803 57689081 -94848178 - Lx5 LINE L1 -1052 5998 5717 2 1025 494 181 43 0 chr5 57689080 57689174 -94848085 + L1_Mur2 LINE L1 5127 5224 -653 2 1025 714 24 0 0 chr5 57689174 57689258 -94848001 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1025 1612 279 28 7 chr5 57689287 57689720 -94847539 - Lx6 LINE L1 -96 7364 6923 2 1025 345 337 82 5 chr5 57689703 57689897 -94847362 + Lx6 LINE L1 6482 6690 -770 2 1025 495 0 0 0 chr5 57690113 57690168 -94847091 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1025 224 250 17 0 chr5 57690175 57690235 -94847024 + A-rich Low_complexity Low_complexity 4 64 0 3 1025 198 209 0 0 chr5 57691519 57691562 -94845697 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1025 26 74 0 0 chr5 57691753 57691807 -94845452 + AT_rich Low_complexity Low_complexity 1 54 0 3 1025 21 0 0 0 chr5 57692648 57692669 -94844590 + AT_rich Low_complexity Low_complexity 1 21 0 3 1025 1268 255 50 39 chr5 57692873 57693236 -94844023 + ORR1D1 LTR MaLR 8 374 0 3 1025 355 331 93 6 chr5 57693446 57693607 -94843652 - B4 SINE B4 -116 176 2 3 1025 296 297 35 26 chr5 57693918 57694032 -94843227 - Tigger5 DNA MER2_type -2 2404 2290 3 1025 3962 110 11 10 chr5 57694914 57695538 -94841721 - L1_Mur1 LINE L1 -1462 4424 3800 3 1025 3286 121 13 42 chr5 57695550 57696103 -94841156 + L1_Mur1 LINE L1 5129 5665 -221 3 1025 2833 143 32 0 chr5 57696101 57696562 -94840697 + Lx3_Mus LINE L1 6141 6616 -393 3 1025 309 109 0 0 chr5 57696589 57696635 -94840624 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 3 1025 180 0 0 0 chr5 57696652 57696672 -94840587 + (CAAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1025 1757 70 8 20 chr5 57696729 57696976 -94840283 + L1_Mus1 LINE L1 6324 6567 0 3 1025 23 0 0 0 chr5 57698035 57698058 -94839201 + AT_rich Low_complexity Low_complexity 1 23 0 3 1025 237 315 22 0 chr5 57698079 57698168 -94839091 + Charlie5 DNA MER1_type 27 117 -2507 3 1025 1501 211 124 11 chr5 57698951 57699305 -94837954 + ORR1B1 LTR MaLR 1 394 0 3 1025 23 0 0 0 chr5 57699909 57699932 -94837327 + AT_rich Low_complexity Low_complexity 1 23 0 3 1025 1738 224 34 2 chr5 57700011 57700455 -94836804 - Lx9 LINE L1 -2 7642 7185 3 1025 674 221 144 11 chr5 57700458 57700632 -94836627 + Lx9 LINE L1 6991 7187 -457 3 1025 1424 223 20 7 chr5 57701166 57701468 -94835791 + ORR1C1 LTR MaLR 73 378 0 3 1025 21 36 0 0 chr5 57701773 57701801 -94835458 + AT_rich Low_complexity Low_complexity 1 28 0 3 1025 639 0 0 0 chr5 57702298 57702369 -94834890 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 1025 622 243 0 57 chr5 57702895 57703052 -94834207 - B1_Mur3 SINE Alu 0 149 2 3 1025 608 0 14 0 chr5 57703124 57703196 -94834063 + (TTC)n Simple_repeat Simple_repeat 3 75 0 3 1025 414 0 0 0 chr5 57703759 57703805 -94833454 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1025 433 260 67 67 chr5 57703917 57704111 -94833148 + Lx6 LINE L1 7241 7434 -26 3 1025 1552 247 37 41 chr5 57705221 57705686 -94831573 - RMER19C LTR ERVK -2 609 147 3 1025 224 77 0 25 chr5 57705686 57705726 -94831533 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 3 1025 232 224 0 0 chr5 57705808 57705857 -94831402 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1025 293 47 23 0 chr5 57706400 57706443 -94830816 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 3 1025 1127 89 0 0 chr5 57706449 57706595 -94830664 - B1_Mus2 SINE Alu 0 147 2 3 1025 25 31 0 0 chr5 57706669 57706701 -94830558 + AT_rich Low_complexity Low_complexity 1 32 0 3 1025 903 10 0 0 chr5 57706993 57707097 -94830162 + (TTTCC)n Simple_repeat Simple_repeat 5 108 0 3 1025 813 49 0 0 chr5 57707102 57707204 -94830055 + (TCTCCC)n Simple_repeat Simple_repeat 5 106 0 3 1025 500 152 59 24 chr5 57707204 57707373 -94829886 + CT-rich Low_complexity Low_complexity 3 177 0 3 1025 31 0 0 0 chr5 57708122 57708153 -94829106 + AT_rich Low_complexity Low_complexity 1 31 0 3 1025 23 0 0 0 chr5 57708739 57708762 -94828497 + AT_rich Low_complexity Low_complexity 1 23 0 3 1025 383 29 43 29 chr5 57709556 57709626 -94827633 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 3 1025 1047 101 0 0 chr5 57709626 57709764 -94827495 - B1_Mus2 SINE Alu -9 138 1 3 1025 531 302 73 16 chr5 57709987 57710261 -94826998 - L1ME3 LINE L1 -560 5884 5595 3 1025 308 277 8 40 chr5 57710276 57710400 -94826859 - L1ME2z LINE L1 -24 6420 6301 3 1025 1046 197 263 0 chr5 57710494 57710783 -94826476 - ORR1B2 LTR MaLR 0 367 3 3 1025 240 228 37 25 chr5 57711310 57711391 -94825868 - L1M5 LINE L1 -482 5682 5601 3 1025 544 277 27 5 chr5 57711425 57711610 -94825649 - L1M5 LINE L1 -937 5507 5319 3 1025 309 336 28 0 chr5 57711864 57711971 -94825288 - ID_B1 SINE B4 -7 217 108 3 1025 299 297 36 0 chr5 57712321 57712432 -94824827 + Lx7 LINE L1 7207 7321 -375 3 1025 313 341 23 0 chr5 57712573 57712705 -94824554 + GA-rich Low_complexity Low_complexity 4 138 0 3 1025 22 0 0 0 chr5 57713065 57713087 -94824172 + AT_rich Low_complexity Low_complexity 1 22 0 3 1025 182 116 23 0 chr5 57713349 57713392 -94823867 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 3 1025 1113 78 0 0 chr5 57713393 57713534 -94823725 - B1_Mm SINE Alu -6 141 1 3 1025 22 70 0 0 chr5 57713919 57713962 -94823297 + AT_rich Low_complexity Low_complexity 1 43 0 3 1025 6888 29 4 4 chr5 57714039 57714864 -94822395 - L1Md_F2 LINE L1 -2 6580 5756 3 1025 529 132 417 26 chr5 57714934 57715090 -94822169 - Lx3A LINE L1 -3 6978 6762 3 1025 21 71 0 0 chr5 57715128 57715170 -94822089 + AT_rich Low_complexity Low_complexity 1 42 0 3 1025 6545 101 50 30 chr5 57715300 57716323 -94820936 - L1_Mus4 LINE L1 -7 6629 5587 3 1025 3500 103 24 16 chr5 57716441 57717020 -94820239 - MusHAL1 LINE L1 -1688 1024 441 3 1025 308 301 79 22 chr5 57718492 57718631 -94818628 - RMER15 LTR ERVL -14 561 415 3 1025 6924 84 23 6 chr5 57718631 57719733 -94817526 + L1_Mus2 LINE L1 5445 6564 -2 3 1025 297 0 0 0 chr5 57719758 57719791 -94817468 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 3 1025 267 357 68 54 chr5 57719791 57719939 -94817320 - RMER15 LTR ERVL -154 421 272 3 1025 363 373 80 57 chr5 57720091 57720529 -94816730 - MER21B LTR ERV1 -161 702 255 3 1025 603 253 60 135 chr5 57720529 57720863 -94816396 - RMER10A LTR ERVL -13 429 121 3 1025 300 289 43 22 chr5 57720923 57721015 -94816244 - MER21B LTR ERV1 -602 261 168 3 1025 390 42 0 0 chr5 57721055 57721103 -94816156 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 3 1025 625 337 5 0 chr5 57721105 57721292 -94815967 + MTD LTR MaLR 14 201 -218 3 1025 1785 130 7 7 chr5 57721303 57721507 -94815752 - L1_Mur2 LINE L1 -485 5392 5188 3 1025 3265 168 20 8 chr5 57721507 57722102 -94815157 - Lx2 LINE L1 -1 6996 6395 3 1025 1785 130 7 7 chr5 57722102 57722183 -94815076 - L1_Mur2 LINE L1 -690 5187 5107 3 1025 2858 132 2 0 chr5 57722180 57722737 -94814522 + Lx2 LINE L1 5406 5965 -1032 3 1025 2461 175 76 4 chr5 57722739 57723215 -94814044 - Lx4B LINE L1 -527 6531 6022 3 1025 2029 164 16 0 chr5 57723197 57723562 -94813697 + Lx4B LINE L1 5606 5976 -1082 3 1025 366 259 0 0 chr5 57723557 57723642 -94813617 + Lx7 LINE L1 7248 7332 -364 3 1025 219 139 0 0 chr5 57723803 57723839 -94813420 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1025 44 20 0 0 chr5 57723911 57723962 -94813297 + AT_rich Low_complexity Low_complexity 1 51 0 3 1025 226 270 0 0 chr5 57724027 57724101 -94813158 + Lx4A LINE L1 5762 5835 -1223 3 1025 21 0 0 0 chr5 57724625 57724646 -94812613 + AT_rich Low_complexity Low_complexity 1 21 0 3 1025 545 291 62 52 chr5 57725614 57725806 -94811453 - B3A SINE B2 -1 197 4 3 1025 359 20 60 0 chr5 57725817 57725867 -94811392 + (TTTTG)n Simple_repeat Simple_repeat 1 53 0 3 1025 1141 75 0 0 chr5 57725867 57726014 -94811245 - B1_Mus1 SINE Alu 0 148 2 3 1025 339 212 0 0 chr5 57726188 57726268 -94810991 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 3 1025 2420 153 12 2 chr5 57727334 57727760 -94809499 - Lx2 LINE L1 0 6997 6568 3 1025 21 0 0 0 chr5 57728143 57728164 -94809095 + AT_rich Low_complexity Low_complexity 1 21 0 3 1025 277 352 85 13 chr5 57728474 57728710 -94808549 + L1ME3 LINE L1 5829 6081 -81 3 1025 1261 244 69 30 chr5 57729178 57729614 -94807645 - Lx9 LINE L1 -1 7643 7191 3 1025 5281 149 26 2 chr5 57730115 57731023 -94806236 - L1_Mur2 LINE L1 -1541 4336 3407 3 1025 227 262 43 58 chr5 57731012 57731150 -94806109 - L1_Mur2 LINE L1 -4128 1752 1617 3 1025 281 306 20 0 chr5 57731347 57731445 -94805814 + L1M3 LINE L1 3559 3658 -2482 3 1025 625 71 0 39 chr5 57731533 57731635 -94805624 + L1_Mus2 LINE L1 6469 6566 0 3 1025 244 307 41 44 chr5 57731781 57732000 -94805259 + L1M3 LINE L1 5558 5780 -511 3 1025 242 286 61 10 chr5 57732886 57732985 -94804274 + MLT1B LTR MaLR 266 369 -21 3 1025 381 43 0 0 chr5 57732997 57733044 -94804215 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1025 1185 61 0 0 chr5 57733104 57733251 -94804008 + B1_Mus2 SINE Alu 1 147 0 3 1025 229 20 100 0 chr5 57733254 57733304 -94803955 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 3 1025 24 0 0 0 chr5 57733699 57733723 -94803536 + AT_rich Low_complexity Low_complexity 1 24 0 3 1025 377 274 0 9 chr5 57735245 57735352 -94801907 + Lx8 LINE L1 6753 6858 -615 3 1025 825 306 30 121 chr5 57735370 57735627 -94801632 + Lx8 LINE L1 6854 7102 -371 3 1025 1622 39 0 19 chr5 57735627 57735838 -94801421 + L1Md_F3 LINE L1 6364 6570 -14 3 1025 825 306 30 121 chr5 57735838 57735914 -94801345 + Lx8 LINE L1 7103 7145 -328 3 1025 1861 199 157 98 chr5 57735914 57736488 -94800771 + RMER19C LTR ERVK 1 608 -3 3 1025 825 306 30 121 chr5 57736488 57736748 -94800511 + Lx8 LINE L1 7146 7394 -79 3 1025 405 169 0 0 chr5 57737619 57737702 -94799557 + (TA)n Simple_repeat Simple_repeat 1 83 0 3 1025 6152 78 1 2 chr5 57738374 57739189 -94798070 - L1Md_F2 LINE L1 -14 6568 5755 3 1025 5209 87 15 1 chr5 57739189 57739911 -94797348 + L1Md_F2 LINE L1 5043 5774 -109 3 1025 425 272 127 66 chr5 57740412 57740609 -94796650 + B3 SINE B2 5 213 -3 3 1025 180 0 0 0 chr5 57740885 57740905 -94796354 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 3 1025 672 277 23 56 chr5 57741013 57741068 -94796191 + B3 SINE B2 9 52 -164 3 1025 1156 174 13 0 chr5 57741068 57741292 -94795967 - Lx2A1 LINE L1 0 7008 6782 3 1025 672 277 23 56 chr5 57741292 57741450 -94795809 + B3 SINE B2 53 215 -1 3 1025 1288 59 6 0 chr5 57742005 57742174 -94795085 - L1_Mus1 LINE L1 -4 6563 6394 3 1025 1724 259 11 52 chr5 57742559 57743035 -94794224 + Lx6 LINE L1 6120 6575 -885 3 1025 9373 108 34 4 chr5 57744256 57745544 -94791715 - Lx3_Mus LINE L1 -8 7001 5673 3 1025 4025 48 38 2 chr5 57745544 57746045 -94791214 - MURVY-LTR LTR ERV1 0 519 1 3 1025 9373 108 34 4 chr5 57746045 57746131 -94791128 - Lx3_Mus LINE L1 -1337 5672 5587 3 1025 2778 109 79 20 chr5 57746154 57746658 -94790601 + L1_Mur1 LINE L1 4480 5013 -873 3 1025 23 68 0 0 chr5 57747000 57747044 -94790215 + AT_rich Low_complexity Low_complexity 1 44 0 4 1025 423 0 0 0 chr5 57747768 57747815 -94789444 + (CATA)n Simple_repeat Simple_repeat 3 49 0 4 1025 367 141 0 39 chr5 57749593 57749696 -94787563 + (TTTG)n Simple_repeat Simple_repeat 2 100 0 4 1025 2581 235 6 0 chr5 57750143 57750646 -94786613 - Lx5 LINE L1 -350 6700 6195 4 1025 1781 169 0 62 chr5 57750664 57751004 -94786255 + ORR1A4 LTR MaLR 3 321 -8 4 1025 1185 227 52 29 chr5 57751008 57751353 -94785906 - Lx5 LINE L1 -875 6175 5823 4 1025 4541 175 31 21 chr5 57751362 57752262 -94784997 + L1_Mur2 LINE L1 4894 5802 -75 4 1025 257 289 46 26 chr5 57752659 57752812 -94784447 - MER96B DNA hAT -237 180 25 4 1025 2292 125 14 17 chr5 57752857 57753215 -94784044 + MT2C_Mm LTR ERVL 119 475 0 4 1025 23 0 0 0 chr5 57753836 57753859 -94783400 + AT_rich Low_complexity Low_complexity 1 23 0 4 1025 401 0 20 0 chr5 57753881 57753930 -94783329 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1025 193 292 14 14 chr5 57754428 57754501 -94782758 - L3 LINE CR1 -4271 218 146 4 1025 26 0 0 0 chr5 57754605 57754631 -94782628 + AT_rich Low_complexity Low_complexity 1 26 0 4 1025 201 74 0 0 chr5 57754772 57754799 -94782460 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1025 201 161 54 0 chr5 57756414 57756470 -94780789 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1025 29 47 0 0 chr5 57756470 57756513 -94780746 + AT_rich Low_complexity Low_complexity 1 43 0 4 1025 254 326 46 46 chr5 57756691 57756842 -94780417 + MLT2B4 LTR ERVL 76 226 -330 4 1025 273 346 9 18 chr5 57756945 57757054 -94780205 + MLT2B4 LTR ERVL 369 476 -80 4 1025 332 252 67 67 chr5 57757414 57757533 -94779726 - RCHARR1 DNA MER1_type -772 202 84 4 1025 5620 82 1 7 chr5 57757668 57758429 -94778830 - L1_Mus2 LINE L1 0 6566 5810 4 1025 2027 72 0 0 chr5 57758429 57758693 -94778566 + MTA_Mm LTR MaLR 133 396 0 4 1025 20803 123 133 38 chr5 57758693 57759031 -94778228 - L1Md_F LINE L1 -267 5616 5235 4 1025 875 53 9 0 chr5 57759031 57759145 -94778114 - B1_Mm SINE Alu 0 147 33 4 1025 20803 123 133 38 chr5 57759145 57760694 -94776565 - L1Md_F LINE L1 -267 5234 3478 4 1025 199 0 65 0 chr5 57760694 57760725 -94776534 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 1025 20803 142 121 31 chr5 57760725 57763387 -94773872 - L1Md_F LINE L1 -2406 3477 522 4 1025 210 143 0 0 chr5 57763402 57763437 -94773822 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1025 4122 71 6 0 chr5 57763443 57763979 -94773280 - L1_Mus1 LINE L1 -2 6565 6027 4 1025 761 103 206 0 chr5 57763979 57764115 -94773144 + L1_Mus1 LINE L1 5856 6019 -548 4 1025 456 200 11 11 chr5 57764238 57764329 -94772930 - L1VL2 LINE L1 -6150 185 95 4 1025 31 26 0 0 chr5 57764691 57764729 -94772530 + AT_rich Low_complexity Low_complexity 1 38 0 4 1025 219 96 38 19 chr5 57764823 57764876 -94772383 + CT-rich Low_complexity Low_complexity 2 55 0 4 1025 624 89 0 0 chr5 57765006 57765107 -94772152 + (GA)n Simple_repeat Simple_repeat 2 102 0 4 1025 261 118 0 0 chr5 57765250 57765301 -94771958 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 4 1025 1287 241 88 0 chr5 57765715 57766035 -94771224 + MTD LTR MaLR 1 348 -71 4 1025 1193 271 49 30 chr5 57766086 57766451 -94770808 - RLTR11A LTR ERVK -27 501 130 4 1025 257 265 35 24 chr5 57766530 57766615 -94770644 + MTE2b LTR MaLR 294 379 0 4 1025 5226 90 44 32 chr5 57766678 57767467 -94769792 - L1_Mus3 LINE L1 0 6638 5840 4 1025 180 0 0 0 chr5 57767741 57767761 -94769498 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1025 43 35 0 0 chr5 57769178 57769235 -94768024 + AT_rich Low_complexity Low_complexity 1 57 0 4 1025 539 176 14 0 chr5 57770113 57770261 -94766998 + (TAGA)n Simple_repeat Simple_repeat 4 153 0 4 1025 586 37 25 0 chr5 57770487 57770568 -94766691 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 4 1025 274 45 45 0 chr5 57770592 57770636 -94766623 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 4 1025 728 192 30 55 chr5 57770636 57770801 -94766458 - RMER19C LTR ERVK -447 164 4 4 1025 294 73 0 0 chr5 57770916 57770957 -94766302 + (TTA)n Simple_repeat Simple_repeat 2 42 0 4 1025 468 0 0 0 chr5 57771000 57771052 -94766207 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1025 261 0 0 0 chr5 57771443 57771472 -94765787 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1025 4870 181 30 12 chr5 57772177 57773219 -94764040 + Lx4A LINE L1 4862 5929 -1129 4 1025 1622 201 74 8 chr5 57773214 57773565 -94763694 - Lx3C LINE L1 -41 6935 6562 4 1025 197 290 81 37 chr5 57774065 57774201 -94763058 + L3 LINE CR1 3553 3694 -795 4 1025 569 253 7 40 chr5 57774549 57774701 -94762558 + B1_Mur4 SINE Alu 1 147 -3 4 1025 309 195 0 105 chr5 57774729 57774815 -94762444 + HAL1-3A_ME LINE L1 1938 2014 -844 4 1025 4846 161 17 1 chr5 57775062 57775903 -94761356 - L1_Mur1 LINE L1 -164 5722 4869 4 1025 3570 147 43 43 chr5 57775904 57776579 -94760680 + L1_Mm LINE L1 5068 5742 -141 4 1025 1024 349 51 39 chr5 57777474 57777673 -94759586 + Lx8 LINE L1 6059 6262 -1211 4 1025 369 0 0 0 chr5 57777673 57777714 -94759545 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1025 2462 252 21 3 chr5 57777714 57778280 -94758979 + Lx9 LINE L1 6405 6980 -664 4 1025 7572 68 2 9 chr5 57778278 57779368 -94757891 - L1Md_F2 LINE L1 -13 6569 5490 4 1025 2614 74 3 0 chr5 57779351 57779703 -94757556 - L1Md_F2 LINE L1 -540 5343 4991 4 1025 677 204 22 50 chr5 57779707 57779938 -94757321 - RMER6D LTR ERVK -59 697 523 4 1025 2425 133 8 15 chr5 57779948 57780344 -94756915 - L1_Mus3 LINE L1 -7 6631 6239 4 1025 1403 91 38 0 chr5 57780344 57780553 -94756706 + L1_Mus3 LINE L1 5945 6161 -477 4 1025 1613 215 15 78 chr5 57780553 57781028 -94756231 - RMER6C LTR ERVK -20 670 226 4 1025 283 287 0 90 chr5 57781214 57781325 -94755934 + B3A SINE B2 40 140 -58 4 1025 1632 107 8 8 chr5 57781336 57781591 -94755668 + L1_Mus3 LINE L1 6384 6638 0 4 1025 1262 128 113 0 chr5 57781595 57781799 -94755460 + MTB_Mm LTR MaLR 181 407 0 4 1025 1277 244 39 23 chr5 57781812 57782122 -94755137 - MTC LTR MaLR -106 315 1 4 1025 189 74 0 0 chr5 57782713 57782740 -94754519 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1025 3283 239 19 87 chr5 57782786 57783713 -94753546 + Lx7 LINE L1 6314 7177 -519 4 1025 666 274 16 26 chr5 57783713 57783904 -94753355 - MTD LTR MaLR -211 208 20 4 1025 397 317 6 68 chr5 57784646 57784822 -94752437 + B3 SINE B2 40 204 -12 4 1025 216 0 0 0 chr5 57784870 57784894 -94752365 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 4 1025 24 77 0 0 chr5 57785254 57785306 -94751953 + AT_rich Low_complexity Low_complexity 1 52 0 4 1025 6577 41 31 0 chr5 57785614 57786425 -94750834 + L1Md_F3 LINE L1 5749 6584 0 4 1025 21 57 0 0 chr5 57786476 57786511 -94750748 + AT_rich Low_complexity Low_complexity 1 35 0 4 1025 277 266 72 39 chr5 57786605 57786711 -94750548 + L1M5 LINE L1 2851 2961 -3185 4 1025 360 0 0 0 chr5 57786711 57786751 -94750508 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 4 1025 4321 133 21 7 chr5 57786752 57787458 -94749801 - Lx3A LINE L1 -7 6974 6259 4 1025 277 266 72 39 chr5 57787458 57787529 -94749730 + L1M5 LINE L1 2962 3034 -3112 4 1025 273 128 0 0 chr5 57790145 57790192 -94747067 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1025 370 352 132 40 chr5 57790669 57790941 -94746318 - MLT1I LTR MaLR -22 389 93 4 1025 24 0 0 0 chr5 57791568 57791592 -94745667 + AT_rich Low_complexity Low_complexity 1 24 0 4 1025 490 324 67 71 chr5 57791778 57792492 -94744767 + L1MA4 LINE L1 5313 6024 -276 4 1025 232 340 98 62 chr5 57792619 57792895 -94744364 - MLT1I-int LTR MaLR -1098 289 4 4 1025 6029 191 25 46 chr5 57794343 57795682 -94741577 - Lx3C LINE L1 -2 6974 5664 4 1025 3006 193 245 55 chr5 57795683 57796228 -94741031 + L1_Mur1 LINE L1 4609 5366 -520 4 1025 4464 54 2 0 chr5 57796228 57796779 -94740480 - L1Md_F2 LINE L1 0 6582 6031 4 1025 6943 91 5 26 chr5 57796779 57798009 -94739250 + L1_Mus2 LINE L1 5364 6566 0 4 1025 262 235 17 183 chr5 57798058 57798178 -94739081 + HERVL74-int LTR ERVL 2257 2356 -3329 4 1025 398 317 133 20 chr5 57798423 57798792 -94738467 + HERVL74-int LTR ERVL 2593 3183 -373 4 1025 889 246 101 23 chr5 57798945 57799186 -94738073 + ORR1B1 LTR MaLR 1 240 -130 4 1025 6403 68 2 5 chr5 57799379 57800314 -94736945 + L1Md_F2 LINE L1 5489 6418 -164 4 1025 1900 98 4 4 chr5 57800314 57800592 -94736667 + IAPLTR3 LTR ERVK 1 278 -48 4 1025 26 0 0 0 chr5 57800931 57800957 -94736302 + AT_rich Low_complexity Low_complexity 1 26 0 4 1025 235 357 104 7 chr5 57801827 57801971 -94735288 + B4 SINE B4 131 288 -4 4 1026 928 386 47 19 chr5 57803559 57804352 -94732907 + Lx8 LINE L1 6460 7274 -199 4 1026 2935 73 2 25 chr5 57804765 57805172 -94732087 + L1_Mus1 LINE L1 6167 6564 -3 4 1026 341 336 68 0 chr5 57805431 57805577 -94731682 + Lx8 LINE L1 6575 6730 -743 4 1026 583 351 86 4 chr5 57805593 57805862 -94731397 + Lx8 LINE L1 6794 7084 -389 4 1026 327 319 121 0 chr5 57806318 57806484 -94730775 - MLT2B1 LTR ERVL -3 564 379 4 1026 1607 129 3 24 chr5 57806609 57806902 -94730357 + Lx LINE L1 6368 6654 0 4 1026 291 203 0 0 chr5 57807920 57807984 -94729275 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1026 33 0 0 0 chr5 57808671 57808704 -94728555 + AT_rich Low_complexity Low_complexity 1 33 0 4 1026 301 311 72 24 chr5 57809188 57809313 -94727946 + B1F1 SINE Alu 8 138 -11 4 1026 369 343 88 16 chr5 57809474 57809794 -94727465 - Lx8 LINE L1 -132 7341 6999 4 1026 29 28 0 0 chr5 57809867 57809903 -94727356 + AT_rich Low_complexity Low_complexity 1 36 0 4 1026 183 80 0 0 chr5 57809903 57809928 -94727331 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1026 369 0 0 0 chr5 57810067 57810108 -94727151 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1026 2899 66 3 3 chr5 57810707 57811088 -94726171 + L1Md_F3 LINE L1 6204 6584 0 4 1026 318 49 0 0 chr5 57811216 57811257 -94726002 - L1_Mm LINE L1 -1670 4213 4173 4 1026 7435 46 2 1 chr5 57811257 57812169 -94725090 + L1Md_F2 LINE L1 5667 6579 -3 4 1026 522 113 0 30 chr5 57812169 57812261 -94724998 + L1_Mm LINE L1 4160 4249 -1634 5 1026 1032 126 6 0 chr5 57812260 57812427 -94724832 + L1_Mm LINE L1 4943 5110 -773 5 1026 1344 63 0 0 chr5 57812429 57812604 -94724655 + (GAA)n Simple_repeat Simple_repeat 3 177 0 5 1026 2024 148 40 30 chr5 57813541 57813946 -94723313 + RLTR9E LTR ERVK 1 409 0 5 1026 1320 97 0 5 chr5 57814021 57814208 -94723051 - Lx3A LINE L1 -1057 5924 5739 5 1026 6300 126 49 3 chr5 57814213 57815237 -94722022 + Lx3A LINE L1 5906 6976 -5 5 1026 298 227 67 0 chr5 57815390 57815465 -94721794 + ID4_ SINE ID 3 82 -1 5 1026 34121 56 6 1 chr5 57815930 57820850 -94716409 + L1Md_F2 LINE L1 681 5585 -298 5 1026 7912 51 2 10 chr5 57820851 57821854 -94715405 + L1Md_F2 LINE L1 5587 6581 -1 5 1026 22 0 0 0 chr5 57822256 57822278 -94714981 + AT_rich Low_complexity Low_complexity 1 22 0 5 1026 230 194 16 0 chr5 57822759 57822821 -94714438 + (TGGA)n Simple_repeat Simple_repeat 3 65 0 5 1026 848 340 0 54 chr5 57822909 57823207 -94714052 - B4A SINE B4 -2 290 9 5 1026 236 284 133 31 chr5 57823316 57823414 -94713845 - PB1D10 SINE Alu 0 120 13 5 1026 41131 6 0 0 chr5 57823619 57830195 -94707064 - L1Md_A LINE L1 0 6582 7 5 1026 1079 242 45 66 chr5 57830492 57830522 -94706737 - MT2B LTR ERVL 0 601 571 5 1026 297 0 0 0 chr5 57830522 57830555 -94706704 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1026 459 0 0 0 chr5 57830555 57830605 -94706654 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1026 1079 247 47 69 chr5 57830605 57830931 -94706328 - MT2B LTR ERVL -31 570 162 5 1026 207 0 0 0 chr5 57830931 57830954 -94706305 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1026 655 304 70 97 chr5 57830954 57831122 -94706137 - MT2B LTR ERVL -372 161 3 5 1026 447 322 142 32 chr5 57831181 57831463 -94705796 - Arthur1 DNA Tip100 -3571 376 64 5 1026 504 182 8 8 chr5 57831547 57831674 -94705585 - Lx9 LINE L1 -4 7640 7514 5 1026 447 19 0 0 chr5 57831678 57831730 -94705529 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1026 1648 221 73 8 chr5 57831733 57832129 -94705130 + RMER4B LTR ERVK 18 439 -146 5 1026 404 267 11 11 chr5 57832206 57832384 -94704875 + (TA)n Simple_repeat Simple_repeat 1 178 0 5 1026 2232 224 82 15 chr5 57832405 57833016 -94704243 - Lx9 LINE L1 -131 7513 6862 5 1026 440 294 46 31 chr5 57833957 57834087 -94703172 - ID_B1 SINE B4 -2 222 91 5 1026 228 213 0 0 chr5 57834224 57834285 -94702974 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 5 1026 818 309 33 65 chr5 57834337 57834804 -94702455 - MT2B LTR ERVL -61 540 1 5 1026 300 368 87 14 chr5 57836129 57836336 -94700923 + L1M4b LINE L1 568 789 -6545 5 1026 300 226 63 31 chr5 57836442 57836611 -94700648 + L1M4b LINE L1 3686 3860 -2877 5 1026 445 321 96 19 chr5 57836611 57836881 -94700378 + B4A SINE B4 2 292 0 5 1026 281 291 95 35 chr5 57837010 57837251 -94700008 - L1_Mur3 LINE L1 -2617 3263 3010 5 1026 1641 63 9 13 chr5 57837251 57837476 -94699783 - L1_Mus2 LINE L1 0 6566 6343 5 1026 281 291 95 35 chr5 57837476 57837519 -94699740 - L1_Mur3 LINE L1 -2871 3009 2962 5 1026 1719 255 83 49 chr5 57837527 57838446 -94698813 - L1_Mur3 LINE L1 -3486 2394 1445 5 1026 6918 141 16 3 chr5 57838473 57838496 -94698763 - Lx3C LINE L1 -9 6967 6947 5 1026 198 0 0 0 chr5 57838496 57838518 -94698741 + (CACCC)n Simple_repeat Simple_repeat 5 26 0 5 1026 6918 141 16 3 chr5 57838518 57839607 -94697652 - Lx3C LINE L1 -30 6946 5840 5 1026 189 0 0 0 chr5 57839608 57839629 -94697630 + (TTA)n Simple_repeat Simple_repeat 2 22 0 5 1026 1295 92 0 0 chr5 57839652 57839825 -94697434 + Lx3C LINE L1 6438 6610 -366 5 1026 489 308 50 44 chr5 57839822 57840313 -94696946 - L1_Mur3 LINE L1 -4499 1381 886 5 1026 482 201 34 27 chr5 57840558 57840706 -94696553 + Lx9 LINE L1 7494 7642 -2 5 1026 21 0 0 0 chr5 57840710 57840731 -94696528 + AT_rich Low_complexity Low_complexity 1 21 0 5 1026 785 229 19 130 chr5 57841136 57841402 -94695857 - Lx7 LINE L1 -194 7502 7268 5 1026 348 64 0 0 chr5 57841402 57841449 -94695810 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 5 1026 1055 81 0 0 chr5 57841451 57841587 -94695672 - B1_Mus1 SINE Alu -12 136 1 5 1026 785 229 19 130 chr5 57841587 57841678 -94695581 - Lx7 LINE L1 -429 7267 7182 5 1026 1061 99 0 0 chr5 57841833 57841975 -94695284 + B1_Mm SINE Alu 1 142 -5 5 1026 228 284 58 76 chr5 57842390 57842539 -94694720 - MIR SINE MIR -106 162 17 5 1026 384 97 0 0 chr5 57844398 57844460 -94692799 + (TATG)n Simple_repeat Simple_repeat 3 64 0 5 1026 215 125 0 24 chr5 57844515 57844556 -94692703 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1026 273 231 33 53 chr5 57844556 57844707 -94692552 + (TAGA)n Simple_repeat Simple_repeat 1 148 0 5 1026 226 56 0 0 chr5 57845154 57845190 -94692069 + L1_Mus2 LINE L1 6529 6564 -2 5 1026 2104 123 42 17 chr5 57845434 57845789 -94691470 + Lx LINE L1 6291 6654 0 5 1026 297 75 0 0 chr5 57846253 57846293 -94690966 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1026 435 83 0 0 chr5 57846478 57846538 -94690721 + (T)n Simple_repeat Simple_repeat 1 60 0 5 1026 607 210 0 0 chr5 57846936 57847055 -94690204 - ORR1A1-int LTR MaLR -833 959 841 5 1026 189 0 0 0 chr5 57847056 57847077 -94690182 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 1026 2865 237 30 148 chr5 57847397 57848608 -94688651 - ORR1B1-int LTR MaLR -939 1024 3 5 1026 1657 190 62 18 chr5 57848610 57848948 -94688311 - ORR1B1 LTR MaLR -1 393 41 5 1026 741 328 100 26 chr5 57849668 57850373 -94686886 + ERVL-B4-int LTR ERVL 1929 2685 -3029 5 1026 280 365 24 0 chr5 57850535 57850661 -94686598 + ERVL-B4-int LTR ERVL 2979 3107 -2654 5 1026 740 317 77 3 chr5 57850732 57851083 -94686176 + ERVL-B4-int LTR ERVL 4861 5237 -477 5 1026 182 62 0 30 chr5 57852350 57852383 -94684876 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 5 1026 297 0 0 0 chr5 57852733 57852766 -94684493 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1026 4566 219 50 21 chr5 57852875 57853660 -94683599 + Lx3C LINE L1 5816 6609 -367 5 1026 3261 42 3 0 chr5 57853660 57854044 -94683215 + IAPEY_LTR LTR ERVK 1 385 0 5 1026 4566 219 50 21 chr5 57854044 57854376 -94682883 + Lx3C LINE L1 6610 6965 -11 5 1026 717 172 76 0 chr5 57854657 57854802 -94682457 - Lx2 LINE L1 -6 6991 6836 5 1026 2975 128 27 23 chr5 57854773 57855260 -94681999 + Lx2 LINE L1 6325 6813 -184 5 1026 358 320 8 8 chr5 57855513 57855639 -94681620 + MLT2B1 LTR ERVL 403 528 -39 5 1026 315 146 0 0 chr5 57855647 57855702 -94681557 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1026 7489 66 14 3 chr5 57855909 57856884 -94680375 - L1Md_F2 LINE L1 -10 6572 5587 5 1026 2924 96 5 0 chr5 57857194 57857592 -94679667 - MTB LTR MaLR 0 400 1 5 1026 1032 237 26 15 chr5 57857606 57857966 -94679293 + RMER19B LTR ERVK 686 902 0 5 1026 1812 162 39 0 chr5 57857966 57858272 -94678987 - ORR1B1 LTR MaLR -76 318 1 5 1026 405 0 0 0 chr5 57858435 57858480 -94678779 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1026 399 41 0 0 chr5 57858480 57858528 -94678731 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1026 5638 148 17 18 chr5 57858828 57859773 -94677486 - Lx LINE L1 0 6654 5711 5 1026 1944 138 3 0 chr5 57859768 57860074 -94677185 + L1_Mm LINE L1 3868 4174 -1709 5 1026 207 0 0 0 chr5 57860074 57860097 -94677162 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 5 1026 869 209 35 126 chr5 57860108 57860447 -94676812 - RMER16 LTR ERVK -101 432 1 5 1026 1586 173 3 0 chr5 57860523 57860812 -94676447 + L1_Mur2 LINE L1 4868 5157 -720 5 1026 778 176 0 22 chr5 57860933 57861088 -94676171 - Lx3A LINE L1 -123 6886 6732 5 1026 180 200 43 0 chr5 57861216 57861286 -94675973 + (TAAA)n Simple_repeat Simple_repeat 1 73 0 5 1026 213 139 28 0 chr5 57861506 57861542 -94675717 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 5 1026 183 80 0 0 chr5 57861542 57861567 -94675692 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1026 392 241 233 41 chr5 57861705 57861902 -94675357 + RMER4B LTR ERVK 343 577 -8 5 1026 261 0 0 0 chr5 57861911 57861940 -94675319 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1026 505 261 75 8 chr5 57862564 57862684 -94674575 + L1M2 LINE L1 5188 5318 -850 5 1026 234 0 0 0 chr5 57862684 57862710 -94674549 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1026 626 295 40 10 chr5 57862710 57863000 -94674259 + L1M2 LINE L1 5319 5636 -532 5 1026 227 254 17 0 chr5 57863036 57863095 -94674164 + L1M2 LINE L1 5718 5777 -406 5 1026 219 88 0 0 chr5 57863550 57863584 -94673675 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1026 489 352 7 0 chr5 57863587 57863726 -94673533 - RSINE1 SINE B4 -18 147 8 5 1026 1627 48 5 0 chr5 57863750 57863958 -94673301 - L1Md_A LINE L1 0 6582 6374 5 1026 654 303 21 11 chr5 57864260 57864447 -94672812 + B3A SINE B2 1 189 -9 5 1026 29 28 0 0 chr5 57864473 57864509 -94672750 + AT_rich Low_complexity Low_complexity 1 36 0 5 1026 534 349 41 15 chr5 57865050 57865318 -94671941 - Lx8 LINE L1 -59 7414 7140 5 1026 193 53 0 73 chr5 57865336 57865377 -94671882 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1026 185 309 72 14 chr5 57865718 57865787 -94671472 - MIRm SINE MIR -144 132 60 5 1026 315 282 0 0 chr5 57865959 57866044 -94671215 + PB1D10 SINE Alu 33 117 0 5 1026 24 0 0 0 chr5 57867237 57867261 -94669998 + AT_rich Low_complexity Low_complexity 1 24 0 5 1026 738 113 0 0 chr5 57867541 57867656 -94669603 + (GGGA)n Simple_repeat Simple_repeat 3 117 0 5 1026 619 332 22 5 chr5 57868008 57868232 -94669027 - Lx9 LINE L1 -1036 6608 6381 5 1026 648 0 0 0 chr5 57868280 57868352 -94668907 + (TTTC)n Simple_repeat Simple_repeat 4 75 0 5 1026 1406 296 80 46 chr5 57868361 57869145 -94668114 + Lx9 LINE L1 6710 7520 -124 5 1026 3640 235 74 8 chr5 57869185 57869323 -94667936 - Lx5 LINE L1 -3 7047 6904 5 1026 297 0 0 0 chr5 57869323 57869356 -94667903 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1026 3640 235 74 8 chr5 57869356 57870135 -94667124 - Lx5 LINE L1 -147 6903 6070 5 1026 18170 181 34 2 chr5 57870157 57870470 -94666789 - L1_Mur2 LINE L1 -117 5760 5447 5 1026 224 30 30 0 chr5 57870470 57870503 -94666756 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 5 1026 18170 181 34 2 chr5 57870503 57873773 -94663486 - L1_Mur2 LINE L1 -431 5446 2066 5 1026 3606 260 20 6 chr5 57873777 57874621 -94662638 + Lx5 LINE L1 6195 7050 0 5 1026 1161 226 14 17 chr5 57874726 57875014 -94662245 + RMER1B Other Other 776 1062 -4 5 1026 587 118 0 81 chr5 57875112 57875223 -94662036 + B2_Mm2 SINE B2 5 106 -89 5 1026 299 25 0 24 chr5 57875538 57875579 -94661680 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 1026 846 304 14 0 chr5 57875917 57876131 -94661128 - Lx9 LINE L1 -953 6691 6475 5 1026 4780 71 2 6 chr5 57876311 57876951 -94660308 - L1Md_T LINE L1 -10 6572 5936 5 1026 3211 23 0 0 chr5 57876953 57877388 -94659871 + L1Md_T LINE L1 5519 5953 -629 5 1026 192 48 47 23 chr5 57878265 57878308 -94658951 + (CAAAA)n Simple_repeat Simple_repeat 5 48 0 6 1026 456 285 32 0 chr5 57878322 57878445 -94658814 + Lx7 LINE L1 6587 6713 -983 6 1026 372 129 16 0 chr5 57878655 57878717 -94658542 + Lx9 LINE L1 7277 7339 -305 6 1026 730 287 41 32 chr5 57878727 57879066 -94658193 - RLTR15 LTR ERVK -17 342 1 6 1026 302 200 90 45 chr5 57879066 57879155 -94658104 + Lx9 LINE L1 7333 7425 -219 6 1026 971 158 21 21 chr5 57879206 57879394 -94657865 - Lx LINE L1 -7 6647 6460 6 1026 3258 102 8 2 chr5 57879394 57879976 -94657283 + Lx LINE L1 5370 5962 -692 6 1026 1669 224 50 21 chr5 57880631 57880801 -94656458 - Lx5 LINE L1 -138 6912 6738 6 1026 501 17 0 0 chr5 57880801 57880859 -94656400 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1026 1669 222 174 18 chr5 57880859 57881339 -94655920 - Lx5 LINE L1 -313 6737 6182 6 1026 185 216 118 0 chr5 57881542 57881593 -94655666 - L2a LINE L2 0 3426 3370 6 1026 21 36 0 0 chr5 57881730 57881758 -94655501 + AT_rich Low_complexity Low_complexity 1 28 0 6 1026 213 39 0 0 chr5 57881820 57881846 -94655413 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1026 8660 20 0 0 chr5 57882384 57883934 -94653325 - L1Md_A LINE L1 0 6582 5033 6 1026 21 0 0 0 chr5 57884274 57884295 -94652964 + AT_rich Low_complexity Low_complexity 1 21 0 6 1026 1693 231 85 7 chr5 57884341 57884802 -94652457 - Lx9 LINE L1 0 7644 7148 6 1026 1232 224 0 7 chr5 57884826 57885096 -94652163 + Lx9 LINE L1 6860 7127 -517 6 1026 1649 228 32 5 chr5 57885902 57886574 -94650685 + L1VL4 LINE L1 878 1570 -4307 6 1026 1864 78 0 0 chr5 57886567 57886810 -94650449 - L1_Mur1 LINE L1 -324 5562 5320 6 1026 347 154 46 0 chr5 57886807 57886872 -94650387 + Lx3A LINE L1 5957 6024 -957 6 1026 459 0 0 0 chr5 57886896 57886947 -94650312 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1026 729 88 0 0 chr5 57887182 57887284 -94649975 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 6 1026 5847 132 24 2 chr5 57887284 57888225 -94649034 + Lx3A LINE L1 6015 6976 -5 6 1026 238 220 20 20 chr5 57888323 57888374 -94648885 - ORR1A4 LTR MaLR -197 132 82 6 1026 1995 200 84 46 chr5 57888374 57888897 -94648362 + Lx4B LINE L1 6464 7006 -52 6 1026 213 65 0 0 chr5 57888940 57888971 -94648288 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 1026 190 319 113 31 chr5 57889078 57889175 -94648084 + MIRb SINE MIR 24 128 -140 6 1026 37760 14 1 7 chr5 57889533 57894721 -94642538 + L1Md_A LINE L1 436 5586 -297 6 1026 8712 19 0 0 chr5 57894721 57895717 -94641542 + L1Md_A LINE L1 5587 6582 0 6 1026 348 311 23 60 chr5 57896540 57896673 -94640586 + MLT1D LTR MaLR 386 614 -13 6 1026 366 270 140 0 chr5 57896844 57896944 -94640315 - RSINE1 SINE B4 -29 136 23 6 1026 423 0 0 0 chr5 57897438 57897485 -94639774 + (TTA)n Simple_repeat Simple_repeat 2 48 0 6 1026 32 26 0 0 chr5 57898388 57898427 -94638832 + AT_rich Low_complexity Low_complexity 1 39 0 6 1026 494 317 51 46 chr5 57898531 57898726 -94638533 - ID_B1 SINE B4 -7 217 22 6 1026 355 218 45 9 chr5 57898952 57899063 -94638196 - L1M5 LINE L1 -1775 4371 4257 6 1026 962 190 51 71 chr5 57899567 57899822 -94637437 + Lx4B LINE L1 6809 7058 0 6 1026 345 277 84 0 chr5 57899876 57899995 -94637264 + L1M4 LINE L1 2387 2515 -3631 6 1026 495 0 0 0 chr5 57900025 57900080 -94637179 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1026 1140 157 71 9 chr5 57900411 57900623 -94636636 + URR1B DNA MER1_type 1 225 0 6 1026 521 15 15 0 chr5 57902066 57902132 -94635127 + (TTA)n Simple_repeat Simple_repeat 2 68 0 6 1026 225 94 0 0 chr5 57902834 57902866 -94634393 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1026 234 0 0 0 chr5 57903402 57903428 -94633831 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1026 238 245 0 0 chr5 57905254 57905307 -94631952 + MLT1A0 LTR MaLR 42 94 -280 6 1026 325 256 13 0 chr5 57905419 57905497 -94631762 + MLT1A0 LTR MaLR 286 364 -1 6 1026 1126 69 0 0 chr5 57905806 57905951 -94631308 + B1_Mm SINE Alu 1 145 -2 6 1026 935 102 0 98 chr5 57906446 57906609 -94630650 + B1_Mus1 SINE Alu 2 148 0 6 1026 202 121 0 29 chr5 57906609 57906643 -94630616 + A-rich Low_complexity Low_complexity 3 35 0 6 1026 306 0 0 0 chr5 57906881 57906915 -94630344 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 1026 253 404 97 39 chr5 57906937 57907298 -94629961 - LTR80A LTR ERVL -129 454 73 6 1026 230 246 0 28 chr5 57907373 57907444 -94629815 - Lx6 LINE L1 0 7460 7392 6 1026 735 234 33 2 chr5 57907449 57907663 -94629596 - L1_Mur3 LINE L1 -7113 599 415 6 1026 765 135 44 25 chr5 57909043 57909203 -94628056 + Lx2B LINE L1 6837 6999 -1 6 1026 21 0 0 0 chr5 57909402 57909423 -94627836 + AT_rich Low_complexity Low_complexity 1 21 0 6 1026 2168 196 77 59 chr5 57909696 57910206 -94627053 + RLTR24 LTR ERV1 11 529 0 6 1026 593 344 100 29 chr5 57910228 57910788 -94626471 + Lx8 LINE L1 6491 7090 -383 6 1026 32 57 0 0 chr5 57910900 57910953 -94626306 + AT_rich Low_complexity Low_complexity 1 53 0 6 1026 314 322 12 62 chr5 57911090 57911252 -94626007 + MLT1C LTR MaLR 1 154 -313 6 1026 1961 180 17 3 chr5 57911600 57911962 -94625297 - ORR1B2 LTR MaLR 0 367 1 6 1026 185 132 0 26 chr5 57912563 57912602 -94624657 + A-rich Low_complexity Low_complexity 3 40 0 6 1026 444 265 8 79 chr5 57913440 57913505 -94623754 - B1_Mur2 SINE Alu 0 149 93 6 1026 1241 188 9 0 chr5 57913505 57913728 -94623531 - URR1A DNA MER1_type -1 225 1 6 1026 444 265 8 79 chr5 57913728 57913789 -94623470 - B1_Mur2 SINE Alu -57 92 32 6 1026 495 0 0 0 chr5 57913845 57913900 -94623359 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1026 1022 101 0 0 chr5 57913924 57914062 -94623197 + B1_Mus1 SINE Alu 1 138 -10 6 1026 257 0 30 0 chr5 57914062 57914095 -94623164 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1026 180 362 0 0 chr5 57914190 57914259 -94623000 - L2b LINE L2 -230 3145 3077 6 1026 570 15 0 0 chr5 57914621 57914688 -94622571 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1026 7568 164 16 7 chr5 57914833 57916263 -94620996 - Lx2B LINE L1 -23 6977 5532 6 1026 776 119 0 0 chr5 57916261 57916379 -94620880 - L1_Mur1 LINE L1 -4136 1750 1633 6 1026 1242 176 30 0 chr5 57916385 57916647 -94620612 + L1_Mur1 LINE L1 1426 1695 -4191 6 1026 564 192 75 0 chr5 57916643 57916763 -94620496 - L1VL4 LINE L1 -5664 638 510 6 1026 934 162 207 19 chr5 57917004 57917021 -94620238 - Lx LINE L1 0 6981 6968 6 1026 425 19 19 0 chr5 57917021 57917075 -94620184 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 6 1026 934 162 207 19 chr5 57917075 57917265 -94619994 - Lx LINE L1 -14 6967 6735 6 1026 1505 113 4 20 chr5 57917270 57917522 -94619737 - Lx LINE L1 0 6654 6407 6 1026 473 165 21 21 chr5 57917526 57917619 -94619640 - Lx LINE L1 -192 6462 6370 6 1026 243 114 0 0 chr5 57918816 57918851 -94618408 + tRNA-Gly-GGA tRNA tRNA 1 35 -40 6 1026 283 287 68 34 chr5 57918854 57919002 -94618257 + Lx7 LINE L1 7177 7329 -367 6 1026 513 0 0 0 chr5 57919006 57919063 -94618196 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1026 907 302 60 29 chr5 57919463 57919916 -94617343 - Lx7 LINE L1 -1382 6314 5848 6 1026 1038 89 0 0 chr5 57920035 57920170 -94617089 + B1_Mm SINE Alu 4 138 -9 6 1026 245 75 25 0 chr5 57920583 57920623 -94616636 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1026 931 197 91 5 chr5 57920627 57920826 -94616433 + MTD LTR MaLR 204 419 0 6 1026 4047 72 13 4 chr5 57921369 57921901 -94615358 - L1Md_F2 LINE L1 -12 6570 6034 6 1026 534 321 14 0 chr5 57922304 57922444 -94614815 + RSINE1 SINE B4 3 144 -21 6 1026 3767 134 49 172 chr5 57922447 57922799 -94614460 + Lx3_Mus LINE L1 6159 6538 -471 6 1026 476 111 83 100 chr5 57922799 57922919 -94614340 + MT2B LTR ERVL 147 264 -337 6 1026 1004 106 0 0 chr5 57922813 57922954 -94614305 + B1_Mus2 SINE Alu 7 147 0 6 1026 3767 134 49 172 chr5 57922954 57922966 -94614293 + Lx3_Mus LINE L1 6539 6553 -456 6 1026 207 0 0 0 chr5 57922966 57922989 -94614270 + (TAA)n Simple_repeat Simple_repeat 2 24 0 6 1026 3767 134 49 172 chr5 57922989 57923430 -94613829 + Lx3_Mus LINE L1 6554 7000 -9 6 1026 31 0 0 0 chr5 57923613 57923644 -94613615 + AT_rich Low_complexity Low_complexity 1 31 0 6 1026 21 36 0 0 chr5 57924114 57924142 -94613117 + AT_rich Low_complexity Low_complexity 1 28 0 6 1026 474 311 96 29 chr5 57925117 57925389 -94611870 - L1MA6 LINE L1 -1145 6328 6039 6 1026 2689 70 6 0 chr5 57925462 57925806 -94611453 + ORR1A1 LTR MaLR 1 346 0 6 1026 732 289 120 18 chr5 57926059 57926514 -94610745 - L1MA6 LINE L1 -365 5935 5436 6 1026 11304 91 21 5 chr5 57926654 57929179 -94608080 + Lx3_Mus LINE L1 4278 6833 -176 6 1026 1639 301 98 55 chr5 57929187 57929431 -94607828 + Lx8 LINE L1 6494 6752 -721 6 1026 242 29 29 0 chr5 57929431 57929466 -94607793 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 6 1026 1639 301 98 55 chr5 57929466 57930159 -94607100 + Lx8 LINE L1 6753 7471 -2 6 1026 25 0 0 0 chr5 57930160 57930185 -94607074 + AT_rich Low_complexity Low_complexity 1 25 0 6 1026 424 337 92 5 chr5 57930198 57930383 -94606876 + B3 SINE B2 6 206 -10 6 1026 234 361 62 36 chr5 57931337 57931449 -94605810 - Lx7 LINE L1 -230 7243 7129 6 1026 1299 371 45 5 chr5 57931554 57932311 -94604948 - Lx8 LINE L1 -230 7243 6457 6 1026 656 289 71 36 chr5 57932653 57933065 -94604194 - Lx7 LINE L1 -1810 5886 5429 6 1026 555 126 53 38 chr5 57933276 57933408 -94603851 + L1_Mus3 LINE L1 6501 6634 -4 6 1027 270 136 0 0 chr5 57933985 57934029 -94603230 + (TA)n Simple_repeat Simple_repeat 1 44 0 6 1027 25 51 0 0 chr5 57934526 57934565 -94602694 + AT_rich Low_complexity Low_complexity 1 39 0 6 1027 198 0 0 0 chr5 57934998 57935020 -94602239 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1027 1113 62 7 0 chr5 57935031 57935177 -94602082 - B1_Mus1 SINE Alu 0 148 2 6 1027 7367 80 11 2 chr5 57935239 57936641 -94600618 + L1_Mus1 LINE L1 5315 6567 0 6 1027 1729 128 17 36 chr5 57938064 57938365 -94598894 + Lx LINE L1 6359 6653 -1 6 1027 481 314 44 36 chr5 57938487 57938761 -94598498 + Lx8 LINE L1 6891 7166 -307 7 1027 7914 55 3 5 chr5 57939064 57940388 -94596871 - L1Md_F2 LINE L1 -10 6572 5250 7 1027 21 0 0 0 chr5 57940501 57940522 -94596737 + AT_rich Low_complexity Low_complexity 1 21 0 7 1027 474 307 49 22 chr5 57940836 57941201 -94596058 - L1M5 LINE L1 -3266 2880 2503 7 1027 313 364 32 19 chr5 57941413 57941441 -94595818 - B4 SINE B4 -50 242 86 7 1027 366 236 127 33 chr5 57941441 57941568 -94595691 - B1_Mur1 SINE Alu -10 140 1 7 1027 342 390 0 0 chr5 57941933 57942056 -94595203 - ID_B1 SINE B4 -1 223 101 7 1027 293 346 80 14 chr5 57942056 57942071 -94595188 - B1F SINE Alu -1 148 2 7 1027 203 131 70 28 chr5 57942204 57942275 -94594984 + (TTATA)n Simple_repeat Simple_repeat 2 75 0 7 1027 2810 24 0 0 chr5 57942743 57943081 -94594178 + ORR1A0 LTR MaLR 1 338 -8 7 1027 1592 287 67 69 chr5 57943195 57944301 -94592958 + Lx6 LINE L1 5986 7449 -11 7 1027 614 176 0 10 chr5 57946944 57947047 -94590212 + B3 SINE B2 4 105 -111 7 1027 38874 35 0 0 chr5 57947052 57952464 -94584795 - L1Md_T LINE L1 0 6582 1170 7 1027 5117 147 27 34 chr5 57952470 57953471 -94583788 - L1Md_T LINE L1 -5411 1205 212 7 1027 258 81 0 0 chr5 57954747 57954784 -94582475 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1027 198 0 0 0 chr5 57954784 57954805 -94582454 + (TA)n Simple_repeat Simple_repeat 1 22 0 7 1027 207 0 0 0 chr5 57955407 57955430 -94581829 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1027 347 380 62 14 chr5 57955490 57955701 -94581558 - Tigger9b DNA MER2_type -401 223 3 7 1027 7370 35 0 4 chr5 57956478 57957597 -94579662 - L1Md_F2 LINE L1 -131 6451 5337 7 1027 1253 60 5 47 chr5 57957597 57957721 -94579538 + L1Md_F2 LINE L1 6396 6520 -62 7 1027 1796 122 22 40 chr5 57957721 57957766 -94579493 + RLTR46 LTR ERVK 1 45 -275 7 1027 1181 48 0 0 chr5 57957766 57957911 -94579348 + B1_Mm SINE Alu 1 145 -2 7 1027 237 33 0 0 chr5 57957911 57957941 -94579318 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1027 1796 122 22 40 chr5 57957941 57958218 -94579041 + RLTR46 LTR ERVK 46 317 -3 7 1027 1253 60 5 47 chr5 57958218 57958285 -94578974 + L1Md_F2 LINE L1 6521 6579 -3 7 1027 395 200 12 0 chr5 57958452 57958537 -94578722 - L1_Mur3 LINE L1 -3411 2469 2384 7 1027 1310 255 15 37 chr5 57959066 57959392 -94577867 - Lx6 LINE L1 -4 7456 7138 7 1027 378 0 0 0 chr5 57959395 57959437 -94577822 + (TA)n Simple_repeat Simple_repeat 1 42 0 7 1027 855 264 94 34 chr5 57959454 57959721 -94577538 - Lx6 LINE L1 -435 7025 6743 7 1027 24 0 0 0 chr5 57960618 57960642 -94576617 + AT_rich Low_complexity Low_complexity 1 24 0 7 1027 21 0 0 0 chr5 57961780 57961801 -94575458 + AT_rich Low_complexity Low_complexity 1 21 0 7 1027 261 236 0 0 chr5 57961996 57962051 -94575208 - Lx9 LINE L1 -252 7392 7338 7 1027 324 0 0 0 chr5 57962054 57962090 -94575169 + (TTA)n Simple_repeat Simple_repeat 1 36 0 7 1027 3394 85 11 4 chr5 57962090 57962564 -94574695 - L1_Mus3 LINE L1 -16 6622 6146 7 1027 3357 102 0 0 chr5 57962565 57963036 -94574223 + L1_Mus3 LINE L1 5645 6115 -523 7 1027 956 267 13 66 chr5 57963034 57963339 -94573920 - Lx9 LINE L1 -297 7347 7059 7 1027 504 212 107 25 chr5 57963351 57963472 -94573787 + B1_Mus1 SINE Alu 4 134 -14 7 1027 259 253 12 12 chr5 57963501 57963585 -94573674 - Lx9 LINE L1 -576 7068 6985 7 1027 322 234 196 34 chr5 57963589 57963793 -94573466 + Lx9 LINE L1 7401 7637 -7 7 1027 608 234 30 76 chr5 57965011 57965137 -94572122 - Lx7 LINE L1 -283 7413 7295 7 1027 381 58 0 0 chr5 57965137 57965189 -94572070 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1027 608 234 30 76 chr5 57965189 57965298 -94571961 - Lx7 LINE L1 -402 7294 7190 7 1027 604 214 18 0 chr5 57965295 57965407 -94571852 - L1_Mur3 LINE L1 -4024 1856 1743 7 1027 2057 167 55 201 chr5 57965405 57966265 -94570994 + L1_Mur3 LINE L1 1855 2588 -3292 7 1027 635 324 42 83 chr5 57966271 57966408 -94570851 - L1_Mur3 LINE L1 -366 5514 5385 7 1027 401 305 78 13 chr5 57966408 57966561 -94570698 - RSINE1 SINE B4 -1 164 2 7 1027 635 324 42 83 chr5 57966561 57967015 -94570244 - L1_Mur3 LINE L1 -496 5384 4947 7 1027 436 212 74 14 chr5 57967096 57967244 -94570015 + Lx2 LINE L1 6824 6980 -17 7 1027 21 95 0 0 chr5 57967252 57967315 -94569944 + AT_rich Low_complexity Low_complexity 1 63 0 7 1027 7305 84 9 1 chr5 57967320 57968512 -94568747 - L1_Mus2 LINE L1 -2 6564 5363 7 1027 229 194 27 14 chr5 57969335 57969408 -94567851 + (TTA)n Simple_repeat Simple_repeat 3 76 0 7 1027 182 220 17 0 chr5 57970033 57970092 -94567167 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1027 216 0 0 0 chr5 57970371 57970395 -94566864 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 1027 1372 267 27 34 chr5 57970413 57970820 -94566439 + MTD LTR MaLR 14 417 -2 7 1027 3708 262 84 56 chr5 57970847 57970995 -94566264 + ORR1D2-int LTR MaLR 53 203 -1167 7 1027 2402 37 0 3 chr5 57970995 57971290 -94565969 + L1Md_F2 LINE L1 6277 6570 -12 7 1027 3708 262 84 56 chr5 57971290 57972417 -94564842 + ORR1D2-int LTR MaLR 204 1363 -7 7 1027 1048 264 110 6 chr5 57972422 57972750 -94564509 + ORR1D2 LTR MaLR 1 362 -8 7 1027 21 57 0 0 chr5 57972789 57972824 -94564435 + AT_rich Low_complexity Low_complexity 1 35 0 7 1027 223 28 56 0 chr5 57974039 57974075 -94563184 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 7 1027 270 0 0 0 chr5 57974912 57974942 -94562317 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 7 1027 623 231 7 20 chr5 57975478 57975628 -94561631 + B1_Mur3 SINE Alu 1 148 -1 7 1027 7416 114 14 34 chr5 57975953 57976916 -94560343 - L1_Mur1 LINE L1 -180 5706 4738 7 1027 3038 39 38 23 chr5 57976916 57977315 -94559944 - L1Md_F3 LINE L1 -3 6581 6177 7 1027 7416 114 14 34 chr5 57977315 57977556 -94559703 - L1_Mur1 LINE L1 -1149 4737 4526 7 1027 2201 175 127 24 chr5 57977545 57977757 -94559502 + Lx3B LINE L1 6415 6626 -347 7 1027 2214 83 120 6 chr5 57977757 57978107 -94559152 - RLTR10 LTR ERVK 0 390 1 7 1027 2201 175 127 24 chr5 57978107 57978337 -94558922 + Lx3B LINE L1 6627 6910 -63 7 1027 2559 103 27 15 chr5 57978337 57978741 -94558518 + RLTR9E LTR ERVK 1 409 0 7 1027 2201 175 127 24 chr5 57978741 57978801 -94558458 + Lx3B LINE L1 6911 6970 -3 7 1027 186 71 0 0 chr5 57978946 57978974 -94558285 + (CAAAAA)n Simple_repeat Simple_repeat 5 32 0 7 1027 276 30 0 0 chr5 57979398 57979431 -94557828 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 7 1027 21 0 0 0 chr5 57979476 57979497 -94557762 + AT_rich Low_complexity Low_complexity 1 21 0 7 1027 23 0 0 0 chr5 57980833 57980856 -94556403 + AT_rich Low_complexity Low_complexity 1 23 0 7 1027 7903 75 15 1 chr5 57981486 57982608 -94554651 - L1_Mus3 LINE L1 -5 6633 5498 7 1027 333 0 0 0 chr5 57982654 57982691 -94554568 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1027 4153 224 27 18 chr5 57982693 57983682 -94553577 + Lx5 LINE L1 6044 7041 -9 7 1027 213 151 0 0 chr5 57984909 57984962 -94552297 + (TA)n Simple_repeat Simple_repeat 1 53 0 7 1027 218 53 79 0 chr5 57985616 57985654 -94551605 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1027 3421 78 9 2 chr5 57986032 57986494 -94550765 + L1_Mus2 LINE L1 6101 6565 -1 7 1027 341 231 13 13 chr5 57986556 57986609 -94550650 - MTEb LTR MaLR -14 365 314 7 1027 197 33 33 0 chr5 57986609 57986639 -94550620 + (TTG)n Simple_repeat Simple_repeat 2 32 0 7 1027 341 231 13 13 chr5 57986639 57986664 -94550595 - MTEb LTR MaLR -66 313 288 7 1027 235 338 0 0 chr5 57986954 57987028 -94550231 - MLT1A LTR MaLR -292 82 9 7 1027 239 360 94 22 chr5 57987453 57987618 -94549641 - MER5A1 DNA MER1_type -1 188 1 7 1027 52 88 0 0 chr5 57987668 57987804 -94549455 + AT_rich Low_complexity Low_complexity 1 136 0 7 1027 210 37 0 0 chr5 57989826 57989853 -94547406 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1027 358 323 106 87 chr5 57990544 57990913 -94546346 - MLT1A1 LTR MaLR -13 395 20 7 1027 1516 173 118 18 chr5 57991068 57991397 -94545862 + Lx2B LINE L1 6637 6998 -2 7 1027 243 296 12 12 chr5 57991429 57991511 -94545748 + CT-rich Low_complexity Low_complexity 2 83 0 7 1027 233 312 0 15 chr5 57992213 57992278 -94544981 - B4A SINE B4 -227 65 2 7 1027 1317 246 84 3 chr5 57992282 57992641 -94544618 - RMER15 LTR ERVL 0 575 188 7 1027 31 26 0 0 chr5 57993343 57993381 -94543878 + AT_rich Low_complexity Low_complexity 1 38 0 7 1027 215 217 0 0 chr5 57993472 57993518 -94543741 + (ATG)n Simple_repeat Simple_repeat 1 46 0 7 1027 225 182 0 0 chr5 57993520 57993575 -94543684 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1027 232 357 12 0 chr5 57995966 57996050 -94541209 - MLT1A0 LTR MaLR -169 196 112 7 1027 396 0 0 0 chr5 57996056 57996100 -94541159 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1027 925 305 145 61 chr5 57996117 57996923 -94540336 - Charlie1a DNA MER1_type -573 882 9 7 1027 365 381 109 16 chr5 57997677 57998109 -94539150 - L2a LINE L2 -15 3411 2940 7 1027 255 272 0 0 chr5 57998391 57998483 -94538776 + CT-rich Low_complexity Low_complexity 3 94 0 7 1027 226 170 0 36 chr5 57998907 57998962 -94538297 + (TAAG)n Simple_repeat Simple_repeat 2 54 0 7 1027 7916 82 6 1 chr5 58000412 58001647 -94535612 + L1_Mus3 LINE L1 5398 6637 -1 1 1027 265 317 0 38 chr5 58003283 58003388 -94533871 - MIR SINE MIR -5 257 157 2 1027 564 283 148 46 chr5 58004814 58005077 -94532182 + RMER5 LTR ERV1 245 534 0 3 1027 934 344 65 22 chr5 58005078 58005491 -94531768 + MER70B LTR ERVL 43 473 -105 4 1027 8142 34 1 8 chr5 58005618 58006713 -94530546 - L1Md_F2 LINE L1 -1 6581 5499 5 1027 234 0 0 0 chr5 58007556 58007582 -94529677 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1027 600 62 0 0 chr5 58008022 58008103 -94529156 + (TCCC)n Simple_repeat Simple_repeat 4 84 0 7 1027 1554 232 39 94 chr5 58008589 58009056 -94528203 - RLTR41 LTR ERV1 -5 441 1 8 1027 252 359 44 74 chr5 58009076 58009305 -94527954 - MIRb SINE MIR -8 260 39 9 1027 30543 85 15 36 chr5 58009314 58014017 -94523242 + L1Md_F2 LINE L1 399 4995 -888 1 1027 2952 69 10 0 chr5 58014017 58014408 -94522851 + L1Md_F3 LINE L1 6190 6584 0 1 1027 30543 80 4 42 chr5 58014408 58015008 -94522251 + L1Md_F2 LINE L1 4996 5586 -297 1 1027 7359 68 20 3 chr5 58015009 58015987 -94521272 + L1Md_F2 LINE L1 5588 6582 0 1 1027 198 0 0 0 chr5 58016031 58016053 -94521206 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1027 417 57 0 0 chr5 58016079 58016132 -94521127 + Lx3_Mus LINE L1 5795 5847 -1162 1 1027 840 171 12 235 chr5 58016138 58016466 -94520793 - RLTR23 LTR ERV1 -175 255 1 1 1027 294 29 0 0 chr5 58016686 58016721 -94520538 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 1 1027 335 258 108 0 chr5 58017409 58017502 -94519757 + RLTR47_MM LTR ERV1 321 423 -109 1 1027 242 312 63 21 chr5 58017505 58017600 -94519659 - Lx8 LINE L1 -292 7181 7083 1 1027 950 339 54 54 chr5 58017785 58017974 -94519285 - Lx8 LINE L1 -741 6732 6544 1 1027 5298 130 20 9 chr5 58017974 58018821 -94518438 + Lx2A LINE L1 6152 7007 -1 1 1027 950 339 54 54 chr5 58018821 58019167 -94518092 - Lx8 LINE L1 -930 6543 6198 1 1027 225 0 0 0 chr5 58019171 58019196 -94518063 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1027 1539 86 12 4 chr5 58019223 58019468 -94517791 - Lx2A1 LINE L1 -2 7006 6760 2 1027 22 80 0 0 chr5 58019469 58019519 -94517740 + AT_rich Low_complexity Low_complexity 1 50 0 2 1027 21 0 0 0 chr5 58020522 58020543 -94516716 + AT_rich Low_complexity Low_complexity 1 21 0 2 1027 678 291 114 8 chr5 58020688 58020951 -94516308 + B4A SINE B4 2 292 0 2 1027 352 356 23 8 chr5 58024995 58025125 -94512134 - B1F SINE Alu 0 149 18 2 1027 287 230 83 74 chr5 58026758 58026866 -94510393 + PB1D7 SINE Alu 9 117 -3 2 1027 2501 238 8 8 chr5 58026913 58027430 -94509829 - Lx5 LINE L1 -2 7048 6532 2 1027 2528 200 57 21 chr5 58027427 58028005 -94509254 + Lx5 LINE L1 5677 6275 -775 2 1027 3602 161 25 19 chr5 58028016 58028941 -94508318 - Lx5 LINE L1 -938 6112 5214 2 1027 1539 171 70 121 chr5 58029132 58029572 -94507687 + RLTR25A LTR ERVK 686 1103 0 2 1027 282 299 36 36 chr5 58029721 58029860 -94507399 - L1MA6 LINE L1 -160 6140 6002 2 1027 288 77 0 0 chr5 58030261 58030300 -94506959 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1027 32 67 0 0 chr5 58030612 58030672 -94506587 + AT_rich Low_complexity Low_complexity 1 60 0 3 1027 839 196 25 55 chr5 58031743 58031940 -94505319 - MTC LTR MaLR 0 421 201 3 1027 195 82 59 39 chr5 58032091 58032142 -94505117 + T-rich Low_complexity Low_complexity 3 54 0 3 1027 362 246 37 44 chr5 58032837 58032973 -94504286 - L1M2 LINE L1 -2098 4045 3911 3 1027 530 304 35 20 chr5 58033083 58033281 -94503978 - Lx8 LINE L1 -80 7393 7193 3 1027 691 323 62 97 chr5 58033342 58033829 -94503430 - Lx5 LINE L1 -102 6948 6479 3 1027 2034 227 165 8 chr5 58033826 58034450 -94502809 - Lx5 LINE L1 -687 6363 5642 3 1027 2505 175 18 2 chr5 58034454 58034947 -94502312 + Lx5 LINE L1 5161 5661 -219 3 1027 885 266 76 4 chr5 58034931 58035207 -94502052 - Lx8 LINE L1 -339 7134 6839 3 1027 207 114 0 0 chr5 58035937 58035972 -94501287 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1027 1392 182 225 11 chr5 58036160 58036538 -94500721 - RMER6B LTR ERVK 0 461 3 3 1027 810 31 0 0 chr5 58036539 58036636 -94500623 + (TTCCC)n Simple_repeat Simple_repeat 1 97 0 3 1027 24 53 0 0 chr5 58036706 58036744 -94500515 + AT_rich Low_complexity Low_complexity 1 38 0 4 1027 360 0 0 0 chr5 58037957 58037997 -94499262 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1027 417 342 72 46 chr5 58038281 58038647 -94498612 + MLT1A LTR MaLR 1 467 0 4 1027 7360 17 4 24 chr5 58038946 58040489 -94496770 + L1Md_A LINE L1 422 1929 -3954 4 1027 2719 106 49 36 chr5 58040489 58040958 -94496301 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1027 995 93 91 23 chr5 58040959 58041134 -94496125 + IAPEz-int LTR ERVK 9 195 -6286 4 1027 237 250 0 0 chr5 58041143 58041187 -94496072 + RLTR27 LTR ERVK 232 275 -34 4 1027 3462 77 37 36 chr5 58041187 58041827 -94495432 + IAPEz-int LTR ERVK 168 662 -5819 4 1027 939 59 0 0 chr5 58041827 58041946 -94495313 + IAPEz-int LTR ERVK 1359 1477 -5004 4 1027 1896 84 12 0 chr5 58041941 58042192 -94495067 + IAPEz-int LTR ERVK 2244 2497 -5183 4 1027 14680 40 5 8 chr5 58042219 58043998 -94493261 + IAPEz-int LTR ERVK 4708 6481 0 4 1027 2338 110 134 16 chr5 58043998 58044423 -94492836 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1027 31646 13 0 0 chr5 58044423 58048085 -94489174 + L1Md_T LINE L1 1924 5586 -297 4 1027 8873 11 0 0 chr5 58048085 58049081 -94488178 + L1Md_T LINE L1 5587 6582 0 4 1027 7413 18 0 0 chr5 58049085 58049929 -94487330 + L1Md_A LINE L1 5739 6582 0 4 1027 22 35 0 0 chr5 58050080 58050109 -94487150 + AT_rich Low_complexity Low_complexity 1 29 0 4 1027 271 118 94 0 chr5 58050196 58050281 -94486978 + (TA)n Simple_repeat Simple_repeat 2 94 0 5 1027 369 243 163 48 chr5 58050428 58050575 -94486684 + MLT1C LTR MaLR 4 167 -300 5 1027 234 242 0 0 chr5 58051366 58051428 -94485831 - L1M3 LINE L1 -243 5925 5864 5 1027 492 42 14 14 chr5 58051506 58051578 -94485681 - RLTR25A LTR ERVK 0 1103 1032 5 1027 22 0 0 0 chr5 58051771 58051793 -94485466 + AT_rich Low_complexity Low_complexity 1 22 0 5 1027 23 78 0 0 chr5 58051843 58051894 -94485365 + AT_rich Low_complexity Low_complexity 1 51 0 5 1027 372 22 0 0 chr5 58051993 58052038 -94485221 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1027 28 0 0 0 chr5 58052909 58052937 -94484322 + AT_rich Low_complexity Low_complexity 1 28 0 5 1027 362 279 87 0 chr5 58052963 58053067 -94484192 - RSINE1 SINE B4 -9 156 44 5 1027 2702 83 49 5 chr5 58054054 58054443 -94482816 - L1Md_F2 LINE L1 -1 6581 6176 5 1027 4129 86 17 5 chr5 58054462 58055046 -94482213 + L1Md_F2 LINE L1 5980 6570 -12 6 1027 9816 81 3 10 chr5 58055206 58057602 -94479657 + L1Md_F2 LINE L1 155 2534 -3349 6 1027 351 98 0 0 chr5 58057602 58057663 -94479596 + (T)n Simple_repeat Simple_repeat 1 61 0 6 1027 41614 13 0 6 chr5 58057683 58064276 -94472983 - L1Md_A LINE L1 0 6582 34 6 128 26580 51 8 1 chr5 58064276 58068133 -94469126 + L1Md_F2 LINE L1 2521 6409 -173 6 1028 253 146 0 77 chr5 58068156 58068208 -94469051 - B1_Mus2 SINE Alu -60 87 40 6 1028 307 156 0 49 chr5 58068212 58068293 -94468966 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 6 1028 281 182 36 0 chr5 58068356 58068411 -94468848 - PB1D9 SINE Alu -61 59 3 6 1028 273 245 107 0 chr5 58068411 58068435 -94468824 - B4 SINE B4 -67 132 64 6 1028 1147 83 6 29 chr5 58068538 58068712 -94468547 + L1Md_F2 LINE L1 6413 6582 0 6 1028 21 0 0 0 chr5 58069112 58069133 -94468126 + AT_rich Low_complexity Low_complexity 1 21 0 6 1028 260 131 0 21 chr5 58069273 58069320 -94467939 - Lx LINE L1 -675 5979 5934 7 1028 230 294 80 34 chr5 58070109 58070197 -94467062 - MIRb SINE MIR -56 212 121 7 1028 336 48 0 0 chr5 58070215 58070257 -94467002 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1028 8411 141 32 7 chr5 58070572 58070598 -94466661 - Lx2 LINE L1 0 6997 6971 7 1028 288 0 0 0 chr5 58070598 58070630 -94466629 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 7 1028 8411 145 32 6 chr5 58070630 58072177 -94465082 - Lx2 LINE L1 -27 6970 5386 7 1028 32 0 0 0 chr5 58072586 58072618 -94464641 + AT_rich Low_complexity Low_complexity 1 32 0 7 1028 207 247 169 62 chr5 58073156 58073316 -94463943 - MIRb SINE MIR -14 254 78 7 1028 2583 58 0 0 chr5 58073340 58073648 -94463611 + L1Md_F2 LINE L1 6275 6582 0 7 1028 239 26 79 0 chr5 58073856 58073894 -94463365 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 7 1028 364 270 77 27 chr5 58074668 58074820 -94462439 - Lx7 LINE L1 0 7696 7534 7 1028 1231 81 75 0 chr5 58074820 58074993 -94462266 + B2_Mm1t SINE B2 1 186 -7 8 1028 364 270 77 27 chr5 58074993 58075027 -94462232 - Lx7 LINE L1 -163 7533 7497 7 1028 354 45 0 0 chr5 58075027 58075071 -94462188 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1028 1045 233 245 27 chr5 58075071 58075352 -94461907 - Lx7 LINE L1 -200 7496 7157 7 1028 1435 230 55 43 chr5 58075354 58075700 -94461559 + Lx7 LINE L1 6710 7059 -637 7 1028 225 47 70 0 chr5 58075752 58075795 -94461464 + (TA)n Simple_repeat Simple_repeat 1 46 0 8 1028 499 301 104 32 chr5 58076006 58076226 -94461033 + Lx8 LINE L1 6944 7179 -294 8 1028 329 350 77 49 chr5 58076268 58076451 -94460808 + MLT1N2 LTR MaLR 77 264 -298 8 1028 254 75 56 56 chr5 58077710 58077781 -94459478 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 8 1028 387 236 22 0 chr5 58077803 58077892 -94459367 - RSINE1 SINE B4 -40 125 35 8 1028 259 299 0 10 chr5 58078008 58078106 -94459153 + (TG)n Simple_repeat Simple_repeat 2 98 0 8 1028 378 307 98 10 chr5 58079862 58080056 -94457203 - L1M4 LINE L1 -1320 4826 4616 8 1028 896 314 98 36 chr5 58080313 58081067 -94456192 - L1M4 LINE L1 -1990 4156 3356 8 1028 253 235 133 0 chr5 58081156 58081254 -94456005 - L1M4 LINE L1 -2770 3376 3266 8 1028 202 216 0 0 chr5 58081295 58081346 -94455913 + T-rich Low_complexity Low_complexity 1 51 0 8 1028 337 285 96 107 chr5 58081668 58081845 -94455414 + B3 SINE B2 16 190 -5 9 1028 2925 15 95 6 chr5 58082606 58082943 -94454316 + IAPLTR1_Mm LTR ERVK 1 367 0 9 1028 8037 81 81 49 chr5 58082943 58084209 -94453050 + IAPEz-int LTR ERVK 8 1313 -5168 9 1028 29345 21 1 2 chr5 58084208 58087485 -94449774 + IAPEz-int LTR ERVK 3210 6481 0 9 1028 2925 15 95 6 chr5 58087485 58087822 -94449437 + IAPLTR1_Mm LTR ERVK 1 367 0 9 1028 1898 305 45 29 chr5 58088209 58088962 -94448297 + Lx8 LINE L1 6701 7465 -8 9 1028 294 29 0 0 chr5 58089138 58089173 -94448086 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1028 375 78 0 0 chr5 58090351 58090402 -94446857 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1028 347 222 71 0 chr5 58091116 58091215 -94446044 + Lx9 LINE L1 7533 7638 -6 9 1028 23 0 0 0 chr5 58093260 58093283 -94443976 + AT_rich Low_complexity Low_complexity 1 23 0 9 1028 180 243 0 0 chr5 58093422 58093459 -94443800 + L2 LINE L2 1489 1525 -1894 9 1028 912 272 48 70 chr5 58093589 58093960 -94443299 + RMER10A LTR ERVL 1 363 -79 9 1028 230 385 45 22 chr5 58094322 58094500 -94442759 - MLT1F LTR MaLR -364 184 3 9 1028 203 273 33 43 chr5 58094918 58095010 -94442249 - MIRb SINE MIR -57 211 121 1 1028 631 328 72 23 chr5 58095431 58095693 -94441566 - B4A SINE B4 -2 290 16 1 1028 729 270 23 0 chr5 58095714 58095888 -94441371 + B3A SINE B2 2 179 -19 1 1028 262 321 79 67 chr5 58096028 58096268 -94440991 + MARNA DNA Mariner 94 336 -250 1 1028 244 359 0 21 chr5 58096302 58096396 -94440863 - MARNA DNA Mariner -418 168 77 1 1028 425 335 22 0 chr5 58097358 58097537 -94439722 + MLT2B4 LTR ERVL 16 198 -358 1 1028 21 36 0 0 chr5 58097608 58097636 -94439623 + AT_rich Low_complexity Low_complexity 1 28 0 1 1028 314 276 161 56 chr5 58097704 58097884 -94439375 + MLT2B4 LTR ERVL 230 428 -128 1 1028 690 168 143 6 chr5 58097941 58098109 -94439150 + B2_Mm2 SINE B2 1 191 -4 1 1028 225 0 0 0 chr5 58098127 58098152 -94439107 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 1028 198 0 0 0 chr5 58098199 58098221 -94439038 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1 1028 23 0 0 0 chr5 58098574 58098597 -94438662 + AT_rich Low_complexity Low_complexity 1 23 0 1 1028 442 299 0 0 chr5 58098660 58098757 -94438502 + PB1D10 SINE Alu 9 105 -12 1 1028 306 0 0 0 chr5 58098849 58098883 -94438376 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1028 470 336 78 29 chr5 58099719 58099961 -94437298 - MLT1H1 LTR MaLR -1 554 301 1 1028 584 144 168 2 chr5 58100397 58100522 -94436737 - B1_Mur4 SINE Alu -2 148 1 1 1028 351 0 0 0 chr5 58100607 58100646 -94436613 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1028 419 266 120 33 chr5 58100670 58100853 -94436406 - MER34A LTR ERV1 -8 563 365 1 1028 551 68 0 33 chr5 58101125 58101216 -94436043 - L1Md_F2 LINE L1 0 6582 6495 1 1028 624 227 0 0 chr5 58101267 58101417 -94435842 + CT-rich Low_complexity Low_complexity 1 150 0 1 1028 359 380 72 65 chr5 58101495 58101940 -94435319 - Arthur1B DNA Tip100 -761 464 17 1 1028 466 72 30 20 chr5 58103386 58103485 -94433774 + (TA)n Simple_repeat Simple_repeat 2 101 0 1 1028 4737 69 9 2 chr5 58103989 58104572 -94432687 + L1_Mus2 LINE L1 5978 6564 -2 1 1028 313 211 16 24 chr5 58109158 58109284 -94427975 + GA-rich Low_complexity Low_complexity 2 126 0 1 1028 24 0 0 0 chr5 58114701 58114725 -94422534 + AT_rich Low_complexity Low_complexity 1 24 0 1 1028 483 63 0 0 chr5 58116741 58116804 -94420455 + (TTTC)n Simple_repeat Simple_repeat 3 65 0 1 1028 26 0 0 0 chr5 58118861 58118887 -94418372 + AT_rich Low_complexity Low_complexity 1 26 0 1 1028 32 0 0 0 chr5 58119289 58119321 -94417938 + AT_rich Low_complexity Low_complexity 1 32 0 1 1028 276 284 8 107 chr5 58122126 58122248 -94415011 - PB1D9 SINE Alu -1 119 10 1 1028 549 0 0 0 chr5 58122766 58122827 -94414432 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1028 787 186 7 0 chr5 58122869 58123014 -94414245 + B1_Mur4 SINE Alu 5 150 0 1 1028 201 113 81 0 chr5 58123029 58123091 -94414168 + (CCAA)n Simple_repeat Simple_repeat 2 68 0 1 1028 321 134 15 15 chr5 58123341 58123409 -94413850 - Lx5 LINE L1 -8 7042 6975 1 1028 1086 264 28 21 chr5 58123409 58123699 -94413560 + Lx5 LINE L1 6560 6851 -199 1 1028 1196 231 84 71 chr5 58124005 58124411 -94412848 + MTD LTR MaLR 9 419 0 1 1028 1007 95 0 11 chr5 58125113 58125294 -94411965 + (TC)n Simple_repeat Simple_repeat 2 180 0 1 1028 432 0 0 0 chr5 58125413 58125461 -94411798 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1028 183 139 0 0 chr5 58127366 58127402 -94409857 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1028 412 325 11 86 chr5 58127522 58127697 -94409562 - B4 SINE B4 -128 164 3 1 1028 324 278 128 90 chr5 58127717 58128093 -94409166 - MLT1B LTR MaLR 0 390 1 1 1028 276 359 21 11 chr5 58129395 58129488 -94407771 - MIR SINE MIR -159 103 10 1 1028 578 336 9 18 chr5 58131124 58131147 -94406112 - B3 SINE B2 0 216 196 1 1028 252 86 0 0 chr5 58131147 58131182 -94406077 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1028 586 315 17 8 chr5 58131182 58131376 -94405883 - B3A SINE B2 -21 195 1 1 1028 1372 218 67 36 chr5 58131467 58131828 -94405431 - ORR1D1 LTR MaLR -2 372 1 1 1028 21 0 0 0 chr5 58132785 58132806 -94404453 + AT_rich Low_complexity Low_complexity 1 21 0 1 1028 200 237 33 17 chr5 58133892 58133952 -94403307 + C-rich Low_complexity Low_complexity 6 66 0 1 1028 261 0 0 0 chr5 58134134 58134163 -94403096 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1028 309 354 61 30 chr5 58135247 58135445 -94401814 + MARNA DNA Mariner 309 512 -74 1 1028 273 214 19 10 chr5 58136048 58136152 -94401107 + (TA)n Simple_repeat Simple_repeat 2 106 0 1 1028 240 35 0 0 chr5 58137374 58137403 -94399856 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 1 1028 579 317 48 36 chr5 58137413 58137662 -94399597 - MLT1D LTR MaLR -2 503 252 1 1028 22 35 0 0 chr5 58137662 58137691 -94399568 + AT_rich Low_complexity Low_complexity 1 29 0 1 1028 666 278 20 0 chr5 58137920 58138071 -94399188 - B3A SINE B2 -42 156 3 1 1028 277 243 171 19 chr5 58139648 58139753 -94397506 + MIRc SINE MIR 128 248 -20 1 1028 336 311 10 0 chr5 58139763 58139866 -94397393 + MER20 DNA MER1_type 103 206 -13 1 1028 1190 57 0 0 chr5 58140016 58140174 -94397085 - L1Md_F3 LINE L1 -15 6569 6412 1 1028 838 269 9 0 chr5 58140225 58140437 -94396822 - B3 SINE B2 0 216 3 1 1028 706 147 54 9 chr5 58140437 58140599 -94396660 - L1_Mus4 LINE L1 -1 6637 6402 1 1028 989 239 34 0 chr5 58140921 58141126 -94396133 - B3 SINE B2 -3 213 2 1 1028 284 314 42 110 chr5 58141139 58141419 -94395840 - B4 SINE B4 -11 281 53 1 1028 357 62 0 0 chr5 58141602 58141650 -94395609 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 1 1028 2542 47 0 6 chr5 58141992 58142312 -94394947 + L1Md_F3 LINE L1 6253 6570 -14 1 1028 639 197 131 0 chr5 58142903 58143025 -94394234 - B1_Mur2 SINE Alu -7 142 5 1 1028 1366 254 101 18 chr5 58143837 58144222 -94393037 - MTD LTR MaLR 0 419 3 1 1028 23 33 0 0 chr5 58144667 58144697 -94392562 + AT_rich Low_complexity Low_complexity 1 30 0 1 1028 197 270 0 0 chr5 58144939 58144976 -94392283 - L2c LINE L2 -77 3310 3274 1 1028 578 289 116 48 chr5 58145026 58145233 -94392026 + ID_B1 SINE B4 2 222 -2 1 1028 268 120 78 20 chr5 58145280 58145331 -94391928 - ORR1C2 LTR MaLR 0 374 321 1 1028 6273 135 39 12 chr5 58145332 58146346 -94390913 + Lx LINE L1 5602 6642 -12 1 1028 564 226 12 81 chr5 58146376 58146549 -94390710 - ORR1C2 LTR MaLR -57 327 167 1 1028 570 204 134 110 chr5 58146556 58146629 -94390630 - ORR1D1 LTR MaLR -114 260 172 1 1028 351 0 0 0 chr5 58146629 58146668 -94390591 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1028 570 204 134 110 chr5 58146668 58146848 -94390411 - ORR1D1 LTR MaLR -203 171 1 1 1028 252 77 0 0 chr5 58147931 58147970 -94389289 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1028 271 359 39 59 chr5 58148879 58149184 -94388075 + L2b LINE L2 2950 3248 -127 1 1028 4665 90 45 3 chr5 58149247 58149928 -94387331 - L1_Mus3 LINE L1 -1 6637 5928 1 1028 198 341 57 88 chr5 58150043 58150339 -94386920 - L2a LINE L2 -38 3388 3102 1 1028 1191 81 0 3 chr5 58150546 58151231 -94386028 + (TG)n Simple_repeat Simple_repeat 1 683 0 1 1028 216 406 64 36 chr5 58151244 58151525 -94385734 - B4 SINE B4 -3 289 1 1 1028 770 194 200 0 chr5 58153118 58153293 -94383966 - B3 SINE B2 -6 210 1 1 1028 228 242 116 8 chr5 58154361 58154490 -94382769 - MER33 DNA MER1_type -37 287 145 1 1028 210 196 22 0 chr5 58154491 58154537 -94382722 + B2_Mm2 SINE B2 2 48 -147 1 1028 23 0 0 0 chr5 58156003 58156026 -94381233 + AT_rich Low_complexity Low_complexity 1 23 0 1 1028 602 203 29 7 chr5 58156068 58156124 -94381135 - Lx4A LINE L1 -3 7055 7000 1 1028 426 20 0 0 chr5 58156124 58156175 -94381084 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1028 602 203 29 7 chr5 58156175 58156257 -94381002 - Lx4A LINE L1 -59 6999 6915 1 1028 330 329 37 25 chr5 58156328 58156490 -94380769 - RSINE1 SINE B4 0 165 2 1 1028 24 0 0 0 chr5 58157397 58157421 -94379838 + AT_rich Low_complexity Low_complexity 1 24 0 1 1028 215 31 0 30 chr5 58158934 58158967 -94378292 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1 1028 241 321 0 12 chr5 58159419 58159501 -94377758 - ID2 SINE ID 0 83 3 1 1028 363 67 17 0 chr5 58159556 58159616 -94377643 + L1_Mus3 LINE L1 6571 6631 -7 1 1028 329 312 37 45 chr5 58159982 58160116 -94377143 + AmnSINE1 SINE SINE 1 133 -442 1 1028 1038 209 14 5 chr5 58160166 58160387 -94376872 - URR1B DNA MER1_type -1 224 2 1 1028 774 219 11 43 chr5 58160974 58161160 -94376099 + B3A SINE B2 3 182 -16 1 1028 220 242 32 0 chr5 58161165 58161227 -94376032 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 1 1028 947 171 82 14 chr5 58163105 58163313 -94373946 + URR1A DNA MER1_type 5 226 0 1 1028 213 358 116 0 chr5 58163519 58163614 -94373645 + PB1D7 SINE Alu 4 109 -11 1 1028 212 289 0 19 chr5 58165108 58165161 -94372098 - MIRb SINE MIR -21 247 196 1 1028 320 388 17 0 chr5 58165394 58165510 -94371749 + RSINE1 SINE B4 3 120 -45 1 1028 306 0 0 0 chr5 58165551 58165585 -94371674 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1028 306 0 0 0 chr5 58165628 58165662 -94371597 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1028 213 159 0 0 chr5 58167643 58167687 -94369572 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1 1028 282 143 0 0 chr5 58167688 58167737 -94369522 + (TATG)n Simple_repeat Simple_repeat 1 49 0 1 1028 512 258 33 8 chr5 58167738 58167859 -94369400 - B1_Mur4 SINE Alu -7 143 20 1 1028 390 21 0 0 chr5 58169092 58169139 -94368120 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1028 313 329 52 7 chr5 58169467 58169620 -94367639 + MIR SINE MIR 9 168 -94 2 1028 27 0 0 0 chr5 58170794 58170821 -94366438 + AT_rich Low_complexity Low_complexity 1 27 0 2 1028 275 281 36 12 chr5 58173115 58173198 -94364061 - MER34 LTR ERV1 -83 459 375 2 1028 235 337 49 77 chr5 58173298 58173481 -94363778 - MER34 LTR ERV1 -325 246 69 2 1028 249 33 0 0 chr5 58174405 58174435 -94362824 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1028 27 29 0 0 chr5 58175047 58175081 -94362178 + AT_rich Low_complexity Low_complexity 1 34 0 2 1028 294 50 0 0 chr5 58177264 58177304 -94359955 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1028 378 0 0 0 chr5 58177981 58178023 -94359236 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1028 29 0 0 0 chr5 58179053 58179082 -94358177 + AT_rich Low_complexity Low_complexity 1 29 0 2 1028 816 278 199 0 chr5 58179227 58179594 -94357665 - Lx9 LINE L1 -151 7493 7054 2 1028 723 12 0 0 chr5 58180382 58180466 -94356793 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1028 675 0 0 0 chr5 58180657 58180732 -94356527 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 2 1028 1905 81 52 13 chr5 58180733 58181128 -94356131 - RLTR1B LTR ERV1 -35 477 1 2 1028 21 0 0 0 chr5 58181586 58181607 -94355652 + AT_rich Low_complexity Low_complexity 1 21 0 2 1028 3090 49 196 2 chr5 58181625 58182054 -94355205 - RLTR1B LTR ERV1 0 512 1 2 1028 205 351 90 34 chr5 58182739 58182916 -94354343 + MIR SINE MIR 14 200 -62 2 1028 1902 60 0 27 chr5 58183261 58183519 -94353740 - L1_Mus1 LINE L1 -1 6566 6316 2 1028 306 0 0 0 chr5 58186548 58186582 -94350677 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1028 502 242 46 15 chr5 58186582 58186712 -94350547 - B1F SINE Alu -15 134 1 2 1028 328 376 36 67 chr5 58186737 58186855 -94350404 + ID_B1 SINE B4 7 124 -100 2 1028 943 78 0 0 chr5 58186855 58186984 -94350275 + L1_Mus2 LINE L1 6437 6565 -1 2 1028 328 376 36 67 chr5 58186984 58187090 -94350169 + ID_B1 SINE B4 125 224 0 2 1028 222 91 0 0 chr5 58187553 58187586 -94349673 + (CCTA)n Simple_repeat Simple_repeat 2 34 0 2 1028 295 318 102 9 chr5 58187609 58187717 -94349542 - PB1D7 SINE Alu 0 120 3 2 1028 463 185 13 21 chr5 58187814 58187917 -94349342 + MTC LTR MaLR 315 419 0 2 1028 216 97 0 0 chr5 58188325 58188356 -94348903 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2 1028 886 105 151 0 chr5 58188387 58188539 -94348720 - L1_Mus1 LINE L1 -3 6564 6390 2 1028 230 88 0 0 chr5 58188534 58188568 -94348691 + L1_Mur2 LINE L1 4394 4427 -1450 2 1028 499 154 18 46 chr5 58188568 58188677 -94348582 - Lx3B LINE L1 0 6973 6868 2 1028 24 53 0 0 chr5 58189504 58189542 -94347717 + AT_rich Low_complexity Low_complexity 1 38 0 2 1028 427 335 18 48 chr5 58189574 58189740 -94347519 - RSINE1 SINE B4 -4 161 1 2 1028 1233 181 22 5 chr5 58191080 58191302 -94345957 + URR1A DNA MER1_type 1 226 0 2 1028 419 271 26 71 chr5 58191484 58191639 -94345620 - B1F1 SINE Alu -1 148 1 2 1028 194 62 0 30 chr5 58191698 58191731 -94345528 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1028 921 181 0 0 chr5 58191790 58191967 -94345292 + CT-rich Low_complexity Low_complexity 3 179 0 2 1028 1260 206 49 43 chr5 58193102 58193406 -94343853 - MTC LTR MaLR -2 419 114 2 1028 540 224 77 101 chr5 58193437 58193646 -94343613 + RMER1C Other Other 1137 1340 -2 2 1028 550 142 112 9 chr5 58193647 58193754 -94343505 - MTC LTR MaLR -303 118 1 2 1028 226 335 145 6 chr5 58195582 58195741 -94341518 + L2 LINE L2 1932 2112 -1307 2 128 330 338 145 14 chr5 58195935 58196142 -94341117 + MIR SINE MIR 28 261 -1 2 1029 187 354 19 57 chr5 58196991 58197096 -94340163 + L2 LINE L2 2982 3082 -337 2 1029 21 0 0 0 chr5 58197822 58197843 -94339416 + AT_rich Low_complexity Low_complexity 1 21 0 2 1029 690 35 0 0 chr5 58199604 58199689 -94337570 + (GA)n Simple_repeat Simple_repeat 1 85 0 2 1029 864 123 0 0 chr5 58199740 58199886 -94337373 + (TTCC)n Simple_repeat Simple_repeat 3 148 0 2 1029 312 260 24 31 chr5 58199888 58200015 -94337244 + (TCCTG)n Simple_repeat Simple_repeat 2 127 0 2 1029 248 320 28 37 chr5 58200035 58200142 -94337117 - PB1D10 SINE Alu -11 106 1 2 1029 247 303 0 13 chr5 58201099 58201176 -94336083 - MTEb LTR MaLR -10 369 294 2 1029 234 241 36 12 chr5 58201663 58201747 -94335512 + CT-rich Low_complexity Low_complexity 1 86 0 2 1029 245 258 0 29 chr5 58202877 58202945 -94334314 + CT-rich Low_complexity Low_complexity 4 69 0 2 1029 314 306 70 20 chr5 58202991 58203091 -94334168 - B4A SINE B4 -10 282 178 2 1029 184 382 38 29 chr5 58203204 58203309 -94333950 + L3 LINE CR1 3056 3161 -1328 2 1029 1176 62 0 0 chr5 58203407 58203552 -94333707 - B1_Mus2 SINE Alu -2 145 1 2 1029 26 0 0 0 chr5 58205578 58205604 -94331655 + AT_rich Low_complexity Low_complexity 1 26 0 2 1029 409 290 191 21 chr5 58206294 58206576 -94330683 + L2 LINE L2 2734 3063 -356 2 1029 387 0 0 0 chr5 58206760 58206803 -94330456 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1029 471 18 0 0 chr5 58208974 58209030 -94328229 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1029 614 300 125 42 chr5 58210147 58210460 -94326799 + MTE2b LTR MaLR 18 356 -23 2 1029 261 0 0 0 chr5 58213124 58213153 -94324106 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1029 745 277 45 98 chr5 58213679 58214079 -94323180 + MTE2a LTR MaLR 1 379 0 2 1029 693 147 0 0 chr5 58214780 58214936 -94322323 + (TC)n Simple_repeat Simple_repeat 2 157 0 2 1029 6607 131 8 8 chr5 58214997 58216266 -94320993 + Lx LINE L1 5301 6569 -85 2 1029 4834 44 0 0 chr5 58216282 58216868 -94320391 + L1Md_F3 LINE L1 5982 6567 -17 2 1029 330 159 0 0 chr5 58216868 58216937 -94320322 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 1029 888 114 0 0 chr5 58216937 58217068 -94320191 + MT-int LTR MaLR 90 220 -878 2 1029 243 0 0 0 chr5 58217074 58217101 -94320158 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1029 472 78 37 47 chr5 58217103 58217210 -94320049 + Lx LINE L1 6549 6654 0 2 1029 828 97 0 0 chr5 58217689 58217813 -94319446 + (TC)n Simple_repeat Simple_repeat 1 124 0 2 1029 24 0 0 0 chr5 58217973 58217997 -94319262 + AT_rich Low_complexity Low_complexity 1 24 0 2 1029 1668 140 0 4 chr5 58219124 58219403 -94317856 + Lx LINE L1 6370 6647 -7 2 1029 265 232 28 28 chr5 58220630 58220701 -94316558 + MIR SINE MIR 186 256 -6 2 1029 237 308 9 46 chr5 58221172 58221217 -94316042 - BC1_Mm scRNA scRNA -34 118 79 2 1029 495 0 0 0 chr5 58221217 58221272 -94315987 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 1029 263 296 16 3 chr5 58221272 58221337 -94315922 - ID4 SINE ID -74 78 12 2 1029 183 42 0 0 chr5 58223750 58223774 -94313485 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1029 482 335 106 26 chr5 58223789 58224053 -94313206 - B4A SINE B4 -2 290 6 2 1029 716 33 0 11 chr5 58225345 58225437 -94311822 + (GA)n Simple_repeat Simple_repeat 2 92 0 2 1029 217 302 81 10 chr5 58225515 58225619 -94311640 - L2c LINE L2 -31 3395 3263 2 1029 471 358 32 11 chr5 58225980 58226169 -94311090 - MLT1D LTR MaLR -64 441 249 2 1029 210 230 40 0 chr5 58226270 58226344 -94310915 + CT-rich Low_complexity Low_complexity 1 77 0 2 1029 430 225 120 40 chr5 58226354 58226479 -94310780 - B1_Mus2 SINE Alu -1 146 12 2 1029 492 204 10 0 chr5 58228889 58228992 -94308267 + RMER1B Other Other 945 1048 -18 2 1029 22 35 0 0 chr5 58229571 58229600 -94307659 + AT_rich Low_complexity Low_complexity 1 29 0 2 1029 288 0 0 0 chr5 58229659 58229691 -94307568 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1029 6396 34 38 1 chr5 58229932 58230723 -94306536 - L1Md_F3 LINE L1 -14 6570 5751 2 1029 218 226 0 77 chr5 58231137 58231228 -94306031 + T-rich Low_complexity Low_complexity 3 86 0 2 1029 184 264 118 21 chr5 58231599 58231692 -94305567 + MIRb SINE MIR 84 185 -83 2 1029 195 94 73 36 chr5 58232370 58232425 -94304834 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 2 1029 456 19 0 0 chr5 58234635 58234688 -94302571 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1029 803 73 8 0 chr5 58234688 58234811 -94302448 + (GA)n Simple_repeat Simple_repeat 2 126 0 2 1029 864 0 0 0 chr5 58236780 58236876 -94300383 + (GAA)n Simple_repeat Simple_repeat 1 96 0 2 1029 438 342 76 47 chr5 58237540 58237816 -94299443 + B4 SINE B4 2 285 -7 2 1029 315 0 0 0 chr5 58237821 58237856 -94299403 + (CATA)n Simple_repeat Simple_repeat 3 37 0 2 1029 381 75 0 0 chr5 58237874 58237927 -94299332 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1029 267 189 0 0 chr5 58237928 58237981 -94299278 + GA-rich Low_complexity Low_complexity 1 53 0 2 1029 627 81 0 0 chr5 58238020 58238106 -94299153 + (TG)n Simple_repeat Simple_repeat 2 87 0 2 1029 472 325 0 0 chr5 58238134 58238254 -94299005 - B3A SINE B2 -78 120 1 2 1029 26 50 0 0 chr5 58238268 58238308 -94298951 + AT_rich Low_complexity Low_complexity 1 40 0 2 1029 213 39 0 0 chr5 58238326 58238352 -94298907 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2 1029 247 383 65 27 chr5 58238408 58238593 -94298666 - MER20 DNA MER1_type 0 219 28 2 1029 246 208 0 0 chr5 58239351 58239404 -94297855 + (TTA)n Simple_repeat Simple_repeat 2 54 0 2 1029 22 0 0 0 chr5 58239493 58239515 -94297744 + AT_rich Low_complexity Low_complexity 1 22 0 2 1029 539 71 12 0 chr5 58239545 58239630 -94297629 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 2 1029 24 0 0 0 chr5 58240941 58240965 -94296294 + AT_rich Low_complexity Low_complexity 1 24 0 2 1029 234 371 85 7 chr5 58242137 58242278 -94294981 - MIR3 SINE MIR -12 196 45 2 1029 189 312 135 0 chr5 58244760 58244856 -94292403 + MIRb SINE MIR 39 147 -121 2 1029 403 325 11 78 chr5 58245709 58245889 -94291370 - MER20 DNA MER1_type -1 218 51 2 1029 243 103 0 0 chr5 58247581 58247620 -94289639 + (TCTCCC)n Simple_repeat Simple_repeat 4 42 0 3 1029 270 0 0 0 chr5 58248053 58248083 -94289176 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 1029 351 0 0 0 chr5 58250422 58250461 -94286798 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1029 188 314 54 69 chr5 58250579 58250709 -94286550 - MIR3 SINE MIR -48 160 33 3 1029 355 228 66 102 chr5 58251106 58251243 -94286016 - Lx9 LINE L1 -864 6780 6649 3 1029 8989 9 0 1 chr5 58251249 58252556 -94284703 - L1Md_T LINE L1 0 6582 5315 3 1029 18870 21 1 0 chr5 58252536 58254756 -94282503 + L1Md_T LINE L1 3102 5322 -561 3 1029 236 204 0 0 chr5 58254766 58254810 -94282449 - Lx9 LINE L1 -1009 6635 6592 3 1029 213 121 0 0 chr5 58255143 58255176 -94282083 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1029 30 0 0 0 chr5 58255491 58255521 -94281738 + AT_rich Low_complexity Low_complexity 1 30 0 3 1029 469 307 73 29 chr5 58255765 58255970 -94281289 + RMER15 LTR ERVL 347 560 -15 3 1029 502 314 48 5 chr5 58256820 58257028 -94280231 + MER20 DNA MER1_type 3 219 0 3 1029 192 282 101 47 chr5 58257680 58257829 -94279430 - L2a LINE L2 0 3426 3270 3 1029 408 20 0 0 chr5 58261010 58261059 -94276200 + (TTG)n Simple_repeat Simple_repeat 3 51 0 3 1029 309 73 0 0 chr5 58261059 58261100 -94276159 - HAL1-3A_ME LINE L1 -847 2011 1971 3 1029 483 18 0 0 chr5 58263332 58263388 -94273871 + (TTTTC)n Simple_repeat Simple_repeat 2 57 0 3 1029 974 96 7 0 chr5 58263388 58263524 -94273735 - B1_Mus1 SINE Alu -10 138 2 3 1029 43 0 0 0 chr5 58263616 58263659 -94273600 + AT_rich Low_complexity Low_complexity 1 43 0 3 1029 291 114 0 0 chr5 58264213 58264257 -94273002 + (TTA)n Simple_repeat Simple_repeat 2 45 0 3 1029 3966 51 12 6 chr5 58264364 58264882 -94272377 - L1Md_F3 LINE L1 0 6584 6086 3 1029 373 295 95 33 chr5 58265436 58265643 -94271616 - MER58B DNA MER1_type 0 341 14 3 1029 206 373 88 34 chr5 58265680 58265827 -94271432 + MIRb SINE MIR 6 163 -105 3 1029 457 333 6 16 chr5 58265927 58266110 -94271149 + MIR SINE MIR 82 262 0 3 1029 4416 192 23 21 chr5 58267255 58268113 -94269146 - RMER13A LTR ERVK 0 860 1 3 1029 378 239 87 0 chr5 58268158 58268250 -94269009 - PB1D10 SINE Alu -2 115 16 3 1029 892 265 172 15 chr5 58268660 58269062 -94268197 - MLT1C LTR MaLR -2 465 1 3 1029 400 103 0 0 chr5 58270268 58270326 -94266933 - RLTR11A2 LTR ERVK -469 58 1 3 1029 246 306 24 0 chr5 58270500 58270585 -94266674 + CT-rich Low_complexity Low_complexity 2 88 0 3 1029 25 0 0 0 chr5 58270686 58270711 -94266548 + AT_rich Low_complexity Low_complexity 1 25 0 3 1029 432 0 0 0 chr5 58271632 58271680 -94265579 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1029 680 276 170 59 chr5 58272021 58272344 -94264915 + MTE2b LTR MaLR 16 374 -5 3 1029 591 53 0 0 chr5 58272637 58272712 -94264547 + (TCC)n Simple_repeat Simple_repeat 3 77 0 3 1029 405 379 48 32 chr5 58272771 58273022 -94264237 - ORR1E LTR MaLR -103 256 2 3 1029 772 299 35 28 chr5 58273143 58273425 -94263834 - B4A SINE B4 -8 284 1 3 1029 271 298 38 9 chr5 58275351 58275456 -94261803 - Charlie9 DNA MER1_type -2618 139 32 3 1029 210 295 0 0 chr5 58276344 58276449 -94260810 + CT-rich Low_complexity Low_complexity 2 106 0 3 1029 181 283 22 0 chr5 58276728 58276774 -94260485 + L2c LINE L2 3332 3378 -9 3 1029 271 238 74 12 chr5 58278257 58278338 -94258921 - MLT1A0 LTR MaLR -45 320 235 3 1029 532 360 26 75 chr5 58278824 58279130 -94258129 + B4A SINE B4 1 291 -1 3 1029 182 300 0 0 chr5 58279276 58279326 -94257933 + L4 LINE RTE 1687 1736 -293 3 1029 203 254 0 107 chr5 58279959 58280034 -94257225 - L2 LINE L2 -1014 2405 2339 3 1029 1346 81 5 5 chr5 58280120 58280319 -94256940 - L1Md_F2 LINE L1 -3 6579 6381 3 1029 473 47 16 0 chr5 58281853 58281917 -94255342 + (TCCC)n Simple_repeat Simple_repeat 2 66 0 3 1029 202 286 0 0 chr5 58281918 58281967 -94255292 + CT-rich Low_complexity Low_complexity 2 50 0 3 1029 243 0 0 0 chr5 58282018 58282045 -94255214 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1029 450 0 0 0 chr5 58282045 58282095 -94255164 + (GAGAA)n Simple_repeat Simple_repeat 4 53 0 3 1029 486 259 234 6 chr5 58282889 58283060 -94254199 + B3 SINE B2 1 210 -6 3 1029 23 0 0 0 chr5 58283060 58283083 -94254176 + AT_rich Low_complexity Low_complexity 1 23 0 3 1029 606 232 43 0 chr5 58283689 58283827 -94253432 + B1_Mus1 SINE Alu 4 147 -1 3 1029 238 261 0 30 chr5 58285440 58285507 -94251752 - MamRep434 DNA TcMar 0 426 362 3 1029 219 239 0 0 chr5 58286669 58286715 -94250544 + CT-rich Low_complexity Low_complexity 1 46 0 3 1029 455 111 0 0 chr5 58287099 58287171 -94250088 - L1_Mus3 LINE L1 -7 6631 6560 3 1029 209 265 0 0 chr5 58287354 58287403 -94249856 + (GAATG)n Simple_repeat Simple_repeat 2 50 0 3 1029 182 379 87 0 chr5 58288450 58288553 -94248706 - MIRm SINE MIR -112 164 53 3 1029 203 0 0 36 chr5 58289310 58289338 -94247921 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 1029 22 88 0 0 chr5 58289528 58289585 -94247674 + AT_rich Low_complexity Low_complexity 1 57 0 3 1029 35 63 0 0 chr5 58289927 58289990 -94247269 + AT_rich Low_complexity Low_complexity 1 63 0 3 1029 1127 175 0 5 chr5 58290735 58290942 -94246317 - Lx2B LINE L1 0 7000 6795 3 1029 22 0 0 0 chr5 58291669 58291691 -94245568 + AT_rich Low_complexity Low_complexity 1 22 0 3 1029 502 383 87 39 chr5 58293069 58293531 -94243728 - MLT1D LTR MaLR -6 499 16 3 1029 221 245 0 19 chr5 58294488 58294542 -94242717 + MIRm SINE MIR 223 275 -1 3 1029 23 54 0 0 chr5 58295032 58295069 -94242190 + AT_rich Low_complexity Low_complexity 1 37 0 3 1029 417 20 0 0 chr5 58295237 58295287 -94241972 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1029 528 314 34 10 chr5 58295561 58295767 -94241492 - B3 SINE B2 -5 211 1 3 1029 537 286 59 11 chr5 58295842 58296029 -94241230 - Lx8 LINE L1 -649 6824 6629 3 1029 24 0 0 0 chr5 58296437 58296461 -94240798 + AT_rich Low_complexity Low_complexity 1 24 0 3 1029 308 262 17 70 chr5 58296512 58296627 -94240632 - L1MEg LINE L1 -4160 1924 1816 3 1029 302 259 134 25 chr5 58296651 58296770 -94240489 - Lx8 LINE L1 -341 7132 7001 3 1029 620 358 89 17 chr5 58297044 58297337 -94239922 + MER58B DNA MER1_type 28 341 0 3 1029 1422 120 27 46 chr5 58297867 58298129 -94239130 - L1_Mus3 LINE L1 -1 6637 6381 3 1029 291 328 31 39 chr5 58299990 58300120 -94237139 - MIRb SINE MIR -52 216 88 3 1029 428 35 17 0 chr5 58300519 58300577 -94236682 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 3 1029 183 239 0 0 chr5 58300577 58300623 -94236636 + (TATATG)n Simple_repeat Simple_repeat 4 49 0 3 1029 455 194 0 10 chr5 58300613 58300717 -94236542 + (CA)n Simple_repeat Simple_repeat 2 104 0 3 1029 244 281 30 30 chr5 58301342 58301441 -94235818 + CT-rich Low_complexity Low_complexity 3 101 0 3 1029 1263 70 0 0 chr5 58302416 58302587 -94234672 + (GAAA)n Simple_repeat Simple_repeat 3 173 0 3 1029 252 59 0 0 chr5 58304687 58304721 -94232538 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1029 21 0 0 0 chr5 58305618 58305639 -94231620 + AT_rich Low_complexity Low_complexity 1 21 0 3 1029 372 22 0 0 chr5 58306052 58306097 -94231162 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1029 378 0 0 0 chr5 58306097 58306138 -94231121 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1029 23 68 0 0 chr5 58307611 58307655 -94229604 + AT_rich Low_complexity Low_complexity 1 44 0 3 1029 240 35 0 0 chr5 58308196 58308225 -94229034 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 1029 770 54 18 0 chr5 58308240 58308351 -94228908 + (TCTA)n Simple_repeat Simple_repeat 1 113 0 3 1029 21 0 0 0 chr5 58308988 58309009 -94228250 + AT_rich Low_complexity Low_complexity 1 21 0 3 1029 482 0 0 17 chr5 58309394 58309453 -94227806 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1029 990 48 0 0 chr5 58310035 58310159 -94227100 + (CA)n Simple_repeat Simple_repeat 1 124 0 3 1029 720 124 144 23 chr5 58310792 58310924 -94226335 - B1_Mus1 SINE Alu 0 148 1 3 1029 480 301 93 31 chr5 58311033 58311290 -94225969 - B4A SINE B4 -18 274 2 3 1029 386 99 0 81 chr5 58311294 58311393 -94225866 + CT-rich Low_complexity Low_complexity 1 91 0 3 1029 493 240 9 9 chr5 58311430 58311535 -94225724 - B1_Mur2 SINE Alu -19 130 26 3 1029 755 55 0 9 chr5 58311567 58311677 -94225582 + (CA)n Simple_repeat Simple_repeat 1 109 0 3 1029 795 180 24 36 chr5 58314014 58314181 -94223078 - URR1A DNA MER1_type -3 223 59 3 1029 234 174 0 0 chr5 58315569 58315615 -94221644 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1029 22 0 0 0 chr5 58315751 58315773 -94221486 + AT_rich Low_complexity Low_complexity 1 22 0 3 1029 668 333 50 0 chr5 58316817 58317018 -94220241 - B3 SINE B2 0 216 6 3 1029 352 293 43 57 chr5 58317208 58317349 -94219910 + B1F2 SINE Alu 9 147 -2 3 1029 3692 122 9 2 chr5 58318088 58318639 -94218620 + L1_Mus3 LINE L1 6077 6631 -7 3 1029 405 129 0 0 chr5 58319754 58319824 -94217435 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1029 23 33 0 0 chr5 58320316 58320346 -94216913 + AT_rich Low_complexity Low_complexity 1 30 0 3 1029 1421 232 103 11 chr5 58321518 58321963 -94215296 + Lx9 LINE L1 7152 7637 -7 3 1029 353 254 0 0 chr5 58322207 58322278 -94214981 + ID4 SINE ID 3 73 -10 3 1029 30 27 0 0 chr5 58323850 58323887 -94213372 + AT_rich Low_complexity Low_complexity 1 37 0 3 1029 402 21 0 0 chr5 58323943 58323990 -94213269 + (TATG)n Simple_repeat Simple_repeat 4 50 0 4 1029 242 282 25 17 chr5 58324405 58324524 -94212735 + (TA)n Simple_repeat Simple_repeat 2 121 0 4 1029 297 0 0 0 chr5 58324603 58324636 -94212623 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1029 631 292 28 9 chr5 58324668 58324879 -94212380 + B3 SINE B2 2 216 0 4 1029 285 155 0 0 chr5 58325617 58325675 -94211584 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1029 233 322 51 25 chr5 58326258 58326376 -94210883 + Charlie1a DNA MER1_type 1334 1454 -1 4 128 2342 89 3 60 chr5 58326720 58327089 -94210170 - L1_Mus2 LINE L1 0 6566 6219 4 1030 433 256 22 22 chr5 58327165 58327301 -94209958 - Lx7 LINE L1 0 7696 7561 4 1030 423 98 0 0 chr5 58327315 58327376 -94209883 + (TTCA)n Simple_repeat Simple_repeat 1 61 0 4 1030 2215 227 39 10 chr5 58327392 58327882 -94209377 - Lx5 LINE L1 -57 6993 6490 4 1030 517 196 20 21 chr5 58327889 58328047 -94209212 + B1_Mus2 SINE Alu 3 147 0 4 1030 786 154 42 80 chr5 58328053 58328265 -94208994 - Lx7 LINE L1 -124 7572 7369 4 1030 27 0 0 0 chr5 58328651 58328678 -94208581 + AT_rich Low_complexity Low_complexity 1 27 0 4 1030 1488 164 18 117 chr5 58330011 58330234 -94207025 - RMER17C LTR ERVK 0 410 222 4 1030 1473 39 0 0 chr5 58330234 58330414 -94206845 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 4 1030 1488 164 18 117 chr5 58330414 58330439 -94206820 - RMER17C LTR ERVK -189 221 201 4 1030 1164 59 18 0 chr5 58330439 58330609 -94206650 + (GGA)n Simple_repeat Simple_repeat 3 175 0 4 1030 1488 164 18 117 chr5 58330609 58330814 -94206445 - RMER17C LTR ERVK -210 200 1 4 1030 22 70 0 0 chr5 58332610 58332653 -94204606 + AT_rich Low_complexity Low_complexity 1 43 0 4 1030 748 194 37 0 chr5 58333064 58333198 -94204061 + B1_Mus2 SINE Alu 8 146 -1 4 1030 263 28 28 0 chr5 58333204 58333240 -94204019 + (GGAA)n Simple_repeat Simple_repeat 3 39 0 4 1030 1815 150 18 38 chr5 58333839 58334179 -94203080 + Lx4B LINE L1 6699 7031 -27 4 1030 189 0 0 0 chr5 58338045 58338066 -94199193 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1030 294 29 0 0 chr5 58338545 58338580 -94198679 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1030 696 212 7 27 chr5 58338743 58338893 -94198366 + B1_Mus2 SINE Alu 1 147 0 4 1030 342 0 0 0 chr5 58338916 58338954 -94198305 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1030 281 261 22 11 chr5 58339574 58339609 -94197650 + polypurine Low_complexity Low_complexity 2 36 0 4 1030 973 133 0 16 chr5 58339609 58339792 -94197467 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4 1030 281 261 22 11 chr5 58339792 58339845 -94197414 + polypurine Low_complexity Low_complexity 37 91 0 4 1030 237 65 0 0 chr5 58340679 58340710 -94196549 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1030 26 0 0 0 chr5 58341939 58341965 -94195294 + AT_rich Low_complexity Low_complexity 1 26 0 4 1030 27 96 0 0 chr5 58343493 58343576 -94193683 + AT_rich Low_complexity Low_complexity 1 83 0 4 1030 704 226 20 0 chr5 58344560 58344706 -94192553 - Lx9 LINE L1 -469 7175 7027 4 1030 22 35 0 0 chr5 58344907 58344936 -94192323 + AT_rich Low_complexity Low_complexity 1 29 0 4 1030 632 217 43 7 chr5 58346782 58346921 -94190338 + B1_Mus2 SINE Alu 4 147 0 4 1030 1615 89 8 4 chr5 58347641 58347877 -94189382 - L1_Mus2 LINE L1 0 6566 6330 4 1030 189 74 0 0 chr5 58348661 58348688 -94188571 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 1030 2407 167 44 92 chr5 58348711 58349145 -94188114 - Lx4A LINE L1 -18 7040 6591 4 1030 4431 85 10 2 chr5 58349145 58349746 -94187513 + L1_Mus4 LINE L1 6024 6629 -7 4 1030 2407 167 44 92 chr5 58349746 58349766 -94187493 - Lx4A LINE L1 -468 6590 6590 4 1030 186 43 0 0 chr5 58349766 58349789 -94187470 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1030 2407 167 44 92 chr5 58349789 58349900 -94187359 - Lx4A LINE L1 -468 6590 6501 4 1030 285 100 0 0 chr5 58350307 58350357 -94186902 + (T)n Simple_repeat Simple_repeat 1 50 0 4 1030 212 135 54 0 chr5 58350895 58350932 -94186327 - MIRm SINE MIR -114 162 124 4 1030 221 298 67 67 chr5 58351769 58351859 -94185400 + RSINE1 SINE B4 1 90 -75 4 1030 213 196 0 0 chr5 58351898 58351949 -94185310 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1030 372 312 0 20 chr5 58352070 58352168 -94185091 + PB1D7 SINE Alu 24 119 -1 4 1030 938 102 6 0 chr5 58352218 58352385 -94184874 + (GA)n Simple_repeat Simple_repeat 1 168 0 4 1030 183 114 0 0 chr5 58354537 58354572 -94182687 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1030 399 240 0 0 chr5 58355069 58355173 -94182086 + CT-rich Low_complexity Low_complexity 3 106 0 4 1030 216 0 0 0 chr5 58355902 58355926 -94181333 + (GA)n Simple_repeat Simple_repeat 1 24 0 4 1030 181 324 28 42 chr5 58356941 58357012 -94180247 + L2 LINE L2 1460 1529 -1890 4 1030 298 235 265 0 chr5 58357129 58357231 -94180028 + B1_Mus2 SINE Alu 5 133 -14 4 1030 832 211 45 10 chr5 58358047 58358248 -94179011 + B3 SINE B2 2 209 -7 4 1030 333 286 12 12 chr5 58358972 58359057 -94178202 + PB1D7 SINE Alu 24 108 -12 4 1030 378 185 0 0 chr5 58359216 58359297 -94177962 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1030 768 116 0 8 chr5 58360798 58360920 -94176339 + B1_Mus2 SINE Alu 27 147 0 4 1030 582 104 0 0 chr5 58360925 58361021 -94176238 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 4 1030 25 0 0 0 chr5 58361052 58361077 -94176182 + AT_rich Low_complexity Low_complexity 1 25 0 4 1030 673 254 0 56 chr5 58361994 58362136 -94175123 + B3 SINE B2 1 134 -82 4 1030 4448 82 2 7 chr5 58362136 58362783 -94174476 - L1Md_F2 LINE L1 0 6582 5983 4 1030 264 275 25 12 chr5 58362784 58362865 -94174394 + B3 SINE B2 133 214 -2 4 1030 270 176 0 0 chr5 58362865 58362916 -94174343 + (TA)n Simple_repeat Simple_repeat 2 52 0 4 1030 26 30 0 0 chr5 58363034 58363067 -94174192 + AT_rich Low_complexity Low_complexity 1 33 0 4 1030 256 355 9 45 chr5 58363172 58363284 -94173975 - PB1D10 SINE Alu -5 112 5 4 1030 6801 51 0 0 chr5 58363425 58364266 -94172993 + L1Md_F3 LINE L1 4746 5586 -297 4 1030 7894 48 14 0 chr5 58364266 58365250 -94172009 + L1Md_F3 LINE L1 5587 6584 0 4 1030 309 68 0 0 chr5 58365923 58365967 -94171292 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1030 547 320 6 51 chr5 58366088 58366246 -94171013 + B3 SINE B2 1 151 -65 4 1030 333 0 0 0 chr5 58366246 58366283 -94170976 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1030 27 29 0 0 chr5 58366303 58366337 -94170922 + AT_rich Low_complexity Low_complexity 1 34 0 4 1030 572 280 8 0 chr5 58366337 58366469 -94170790 - B1_Mur1 SINE Alu -10 139 7 4 1030 287 237 28 102 chr5 58366375 58366483 -94170776 - MT2B LTR ERVL -347 254 155 4 1030 185 287 52 94 chr5 58367702 58367798 -94169461 + MIR3 SINE MIR 96 187 -21 4 1030 396 0 0 0 chr5 58369310 58369354 -94167905 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1030 234 0 0 0 chr5 58369460 58369486 -94167773 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1030 207 0 0 0 chr5 58371657 58371680 -94165579 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4 1030 700 175 16 8 chr5 58371683 58371810 -94165449 - B1_Mur3 SINE Alu -13 136 9 4 1030 328 295 14 77 chr5 58371810 58371826 -94165433 - ID_B1 SINE B4 -13 211 78 4 1030 180 0 0 0 chr5 58371999 58372019 -94165240 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1030 534 154 45 6 chr5 58372930 58373087 -94164172 + (TCTA)n Simple_repeat Simple_repeat 3 165 0 4 1030 4893 16 2 2 chr5 58373491 58374054 -94163205 + L1Md_T LINE L1 6020 6582 0 4 1030 267 104 0 0 chr5 58374248 58374296 -94162963 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1030 477 0 0 0 chr5 58374375 58374428 -94162831 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1030 979 280 102 31 chr5 58374428 58374848 -94162411 - MTE-int LTR MaLR -1082 498 49 4 1030 722 190 49 29 chr5 58374967 58375153 -94162106 - B3 SINE B2 0 195 1 4 1030 268 305 50 132 chr5 58375161 58375403 -94161856 - ORR1E LTR MaLR -42 317 96 4 1030 327 273 54 9 chr5 58375461 58375572 -94161687 - MLT2B2 LTR ERVL -399 116 1 4 1030 198 118 0 0 chr5 58375618 58375652 -94161607 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1030 25 31 0 0 chr5 58376439 58376471 -94160788 + AT_rich Low_complexity Low_complexity 1 32 0 4 1030 883 330 112 20 chr5 58376710 58377165 -94160094 - MLT1D LTR MaLR -8 497 1 4 1030 26 30 0 0 chr5 58377181 58377214 -94160045 + AT_rich Low_complexity Low_complexity 1 33 0 4 1030 262 250 17 0 chr5 58378121 58378181 -94159078 - RMER15-int LTR ERVL -416 4583 4523 4 1030 345 318 99 7 chr5 58378327 58378479 -94158780 - RMER15-int LTR ERVL -659 4340 4175 4 1030 1854 330 77 58 chr5 58378640 58379489 -94157770 - RMER15-int LTR ERVL -2776 2223 1371 4 1030 402 39 0 0 chr5 58379489 58379541 -94157718 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1030 1854 330 77 58 chr5 58379541 58379938 -94157321 - RMER15-int LTR ERVL -3629 1370 955 4 1030 282 264 52 52 chr5 58380536 58380652 -94156607 - RMER15-int LTR ERVL -4842 157 42 4 1030 21 0 0 0 chr5 58381477 58381498 -94155761 + AT_rich Low_complexity Low_complexity 1 21 0 4 1030 262 138 0 33 chr5 58381837 58381897 -94155362 + GA-rich Low_complexity Low_complexity 2 59 0 4 1030 791 170 65 24 chr5 58382979 58383148 -94154111 - MTC LTR MaLR -52 369 194 4 1030 201 121 0 0 chr5 58383422 58383455 -94153804 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1030 23 0 0 0 chr5 58383909 58383932 -94153327 + AT_rich Low_complexity Low_complexity 1 23 0 4 1030 288 0 0 0 chr5 58384738 58384770 -94152489 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1030 243 0 0 0 chr5 58385744 58385771 -94151488 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1030 31131 23 0 0 chr5 58385848 58392063 -94145196 - L1Md_T LINE L1 0 6585 273 4 1030 492 72 0 0 chr5 58392420 58392489 -94144770 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 1030 1144 183 51 25 chr5 58392500 58392735 -94144524 + RLTR11A2 LTR ERVK 56 296 -231 4 1030 368 278 94 58 chr5 58392852 58393043 -94144216 - MIR SINE MIR -35 227 30 4 1030 302 286 80 0 chr5 58393205 58393317 -94143942 + Lx8 LINE L1 6988 7108 -365 5 1030 478 269 61 51 chr5 58393857 58394053 -94143206 + B3A SINE B2 1 198 0 5 1030 2086 150 36 3 chr5 58394255 58394617 -94142642 - Lx2 LINE L1 0 6997 6624 5 1030 22 56 0 0 chr5 58394831 58394867 -94142392 + AT_rich Low_complexity Low_complexity 1 36 0 5 1030 773 301 6 6 chr5 58396017 58396191 -94141068 + B3 SINE B2 12 185 -31 5 1030 438 132 0 0 chr5 58396191 58396267 -94140992 + (TC)n Simple_repeat Simple_repeat 1 76 0 5 1030 900 170 0 57 chr5 58396384 58396577 -94140682 - B2_Mm2 SINE B2 -4 191 10 5 1030 27 49 0 0 chr5 58396642 58396683 -94140576 + AT_rich Low_complexity Low_complexity 1 41 0 5 1030 1846 250 75 11 chr5 58397497 58398071 -94139188 - Lx9 LINE L1 0 7644 7034 5 1030 21 36 0 0 chr5 58399606 58399634 -94137625 + AT_rich Low_complexity Low_complexity 1 28 0 5 1030 28 0 0 0 chr5 58399982 58400010 -94137249 + AT_rich Low_complexity Low_complexity 1 28 0 5 1030 337 318 9 26 chr5 58400387 58400500 -94136759 + MTEa LTR MaLR 269 379 0 5 1030 437 283 12 98 chr5 58402317 58402602 -94134657 - B4 SINE B4 -29 263 2 5 1030 428 301 0 22 chr5 58403351 58403490 -94133769 - B1_Mur1 SINE Alu -13 136 1 5 1030 1323 50 0 0 chr5 58406231 58406411 -94130848 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 5 1030 455 230 6 27 chr5 58406411 58406594 -94130665 + CT-rich Low_complexity Low_complexity 1 179 0 5 1030 526 259 20 20 chr5 58408429 58408575 -94128684 - B1_Mur4 SINE Alu 0 150 5 5 1030 629 266 97 92 chr5 58408656 58408863 -94128396 - B3 SINE B2 -7 209 2 5 1030 198 0 0 0 chr5 58410274 58410296 -94126963 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1030 1032 119 0 0 chr5 58411508 58411667 -94125592 + (TTCC)n Simple_repeat Simple_repeat 2 160 0 5 1030 2896 108 11 5 chr5 58411669 58412115 -94125144 - MusHAL1 LINE L1 -1046 1666 1218 5 1030 2296 135 92 22 chr5 58412120 58412535 -94124724 + Lx LINE L1 6210 6653 -1 5 1030 625 315 21 16 chr5 58413078 58413265 -94123994 + Tigger7 DNA MER2_type 10 197 -2294 5 1030 559 294 34 79 chr5 58413282 58413548 -94123711 + Tigger7 DNA MER2_type 275 528 -1963 5 1030 222 177 16 16 chr5 58413569 58413632 -94123627 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 5 1030 258 286 35 18 chr5 58413672 58413786 -94123473 + Tigger7 DNA MER2_type 2261 2376 -115 5 1030 589 143 0 26 chr5 58413910 58414025 -94123234 - Lx2B LINE L1 -3 6997 6886 5 1030 22 0 0 0 chr5 58414112 58414134 -94123125 + AT_rich Low_complexity Low_complexity 1 22 0 5 1030 503 239 44 7 chr5 58415982 58416117 -94121142 - B1_Mur3 SINE Alu -9 140 1 5 1030 594 224 34 40 chr5 58417727 58417876 -94119383 + B1_Mur2 SINE Alu 1 148 -1 5 1030 224 30 30 0 chr5 58418106 58418139 -94119120 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1030 385 195 103 59 chr5 58418357 58418493 -94118766 - Lx4A LINE L1 -1 7057 6916 5 1030 248 241 13 0 chr5 58419143 58419222 -94118037 + (CATA)n Simple_repeat Simple_repeat 3 82 0 5 1030 588 73 0 0 chr5 58419251 58419333 -94117926 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 1030 223 111 36 36 chr5 58419773 58419829 -94117430 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1030 1494 92 14 0 chr5 58420290 58420508 -94116751 - L1_Mus2 LINE L1 0 6566 6346 5 1030 342 0 0 0 chr5 58421322 58421360 -94115899 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1030 1682 148 14 7 chr5 58421425 58421710 -94115549 + Lx2 LINE L1 6710 6996 -1 5 1030 697 308 76 73 chr5 58421740 58422041 -94115218 + ORR1E LTR MaLR 44 345 -14 5 1030 320 295 75 131 chr5 58422193 58422353 -94114906 + MER20 DNA MER1_type 36 186 -33 5 1030 426 319 71 21 chr5 58422377 58422518 -94114741 + B1F SINE Alu 1 148 -1 5 1030 180 0 0 0 chr5 58423679 58423699 -94113560 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1030 2947 41 14 0 chr5 58423701 58424067 -94113192 - L1Md_F2 LINE L1 -13 6569 6199 5 1030 420 0 0 0 chr5 58424067 58424117 -94113142 + L1Md_F3 LINE L1 5692 5741 -843 5 1030 372 230 41 66 chr5 58424175 58424296 -94112963 + RSINE1 SINE B4 11 128 -37 5 1030 645 14 0 0 chr5 58424304 58424378 -94112881 + (TC)n Simple_repeat Simple_repeat 2 75 0 5 1030 288 77 0 0 chr5 58424378 58424416 -94112843 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1030 512 269 41 62 chr5 58426415 58426609 -94110650 - B3A SINE B2 0 216 27 5 1030 221 0 35 0 chr5 58427313 58427342 -94109917 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 1030 580 270 7 7 chr5 58428837 58428986 -94108273 - B1_Mur1 SINE Alu 0 149 1 5 1030 297 0 0 0 chr5 58430670 58430703 -94106556 + (TTA)n Simple_repeat Simple_repeat 2 34 0 5 1030 26 0 0 0 chr5 58432410 58432436 -94104823 + AT_rich Low_complexity Low_complexity 1 26 0 5 1030 414 314 10 10 chr5 58433413 58433516 -94103743 + RSINE1 SINE B4 3 105 -60 5 1030 1136 75 0 0 chr5 58433543 58433689 -94103570 - B1_Mm SINE Alu 0 147 2 5 1030 247 235 14 42 chr5 58433957 58433968 -94103291 + B4A SINE B4 78 86 -206 5 1030 456 271 0 0 chr5 58433968 58434075 -94103184 + B1_Mur2 SINE Alu 2 108 -41 5 1030 201 111 89 0 chr5 58434180 58434225 -94103034 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 5 1030 679 302 51 78 chr5 58435895 58436066 -94101193 - L1MA7 LINE L1 -59 6232 6070 5 1030 261 0 0 0 chr5 58436066 58436095 -94101164 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1030 679 302 51 78 chr5 58436095 58436566 -94100693 - L1MA7 LINE L1 -222 6069 5607 5 1030 378 0 0 0 chr5 58437281 58437323 -94099936 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1030 653 73 0 75 chr5 58437704 58437838 -94099421 + (TG)n Simple_repeat Simple_repeat 2 125 0 5 1030 756 294 6 6 chr5 58438238 58438416 -94098843 + B3 SINE B2 11 188 -28 5 1030 450 0 0 0 chr5 58438429 58438479 -94098780 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1030 2286 58 7 3 chr5 58438833 58439128 -94098131 - L1_Mus1 LINE L1 0 6567 6272 5 1030 766 189 142 5 chr5 58441399 58441617 -94095642 - Lx9 LINE L1 0 7644 7397 5 1030 669 337 91 33 chr5 58441969 58442599 -94094660 - Lx8 LINE L1 -3 7470 6805 5 1030 318 50 0 0 chr5 58442796 58442836 -94094423 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1030 222 330 77 0 chr5 58442859 58442950 -94094309 + PB1D7 SINE Alu 22 119 -1 5 1030 252 0 0 0 chr5 58442961 58442989 -94094270 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 5 1030 25 0 0 0 chr5 58443574 58443599 -94093660 + AT_rich Low_complexity Low_complexity 1 25 0 5 1030 2372 86 24 3 chr5 58446207 58446546 -94090713 - L1_Mus3 LINE L1 -2 6636 6291 5 1030 238 171 0 24 chr5 58446650 58446692 -94090567 + MLT1A1 LTR MaLR 361 401 -7 5 1030 2461 199 112 7 chr5 58446902 58447498 -94089761 + Lx9 LINE L1 6964 7622 -22 5 1030 485 335 20 5 chr5 58447678 58447882 -94089377 - B3 SINE B2 -8 208 2 5 1030 4128 136 3 9 chr5 58449399 58450053 -94087206 - Lx3B LINE L1 -3 6970 6321 5 1030 281 155 0 17 chr5 58450277 58450336 -94086923 + CT-rich Low_complexity Low_complexity 3 60 0 5 1030 272 260 0 0 chr5 58450942 58450963 -94086296 + polypurine Low_complexity Low_complexity 1 21 0 5 1030 712 50 20 0 chr5 58450963 58451064 -94086195 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 5 1030 272 260 0 0 chr5 58451064 58451119 -94086140 + polypurine Low_complexity Low_complexity 22 76 0 5 1030 346 206 65 0 chr5 58451723 58451815 -94085444 - Lx9 LINE L1 -4 7640 7543 5 1030 261 0 0 0 chr5 58451855 58451884 -94085375 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1030 251 203 0 17 chr5 58452025 58452085 -94085174 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1030 289 211 50 40 chr5 58452091 58452190 -94085069 - Lx9 LINE L1 -162 7482 7383 5 1030 201 147 0 0 chr5 58453308 58453342 -94083917 + (TATG)n Simple_repeat Simple_repeat 2 35 0 5 1030 236 373 54 23 chr5 58453343 58453472 -94083787 - RMER12 LTR ERVK -464 858 726 5 1030 216 97 0 0 chr5 58453952 58453983 -94083276 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1030 21 0 0 0 chr5 58454696 58454717 -94082542 + AT_rich Low_complexity Low_complexity 1 21 0 5 1030 198 0 0 0 chr5 58456405 58456427 -94080832 + (GA)n Simple_repeat Simple_repeat 2 23 0 5 1030 23 33 0 0 chr5 58456981 58457011 -94080248 + AT_rich Low_complexity Low_complexity 1 30 0 5 1030 2225 88 65 23 chr5 58457064 58457416 -94079843 - Lx3_Mus LINE L1 -959 6050 5685 5 128 5784 95 32 0 chr5 58457416 58458255 -94079004 + Lx3_Mus LINE L1 6144 7009 0 5 1031 29 0 0 0 chr5 58459442 58459471 -94077788 + AT_rich Low_complexity Low_complexity 1 29 0 5 1031 241 220 0 0 chr5 58460252 58460302 -94076957 + Lx9 LINE L1 7420 7469 -175 5 1031 723 149 242 11 chr5 58461277 58461467 -94075792 - Lx2 LINE L1 0 6997 6764 5 1031 660 255 93 28 chr5 58461469 58461683 -94075576 + L1VL2 LINE L1 110 337 -5998 5 1031 1416 212 0 7 chr5 58463069 58463363 -94073896 - L1_Mm LINE L1 -679 5204 4913 5 1031 2346 142 25 10 chr5 58463363 58463762 -94073497 + L1_Mus4 LINE L1 6232 6636 0 5 1031 1112 68 0 20 chr5 58464273 58464422 -94072837 + B1_Mus2 SINE Alu 2 147 0 5 1031 483 336 89 43 chr5 58464551 58465104 -94072155 + L1M5 LINE L1 4645 5222 -924 5 1031 962 99 35 0 chr5 58466544 58466686 -94070573 + B1_Mus1 SINE Alu 1 147 -1 5 1031 220 27 26 26 chr5 58466691 58466729 -94070530 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 5 1031 294 29 0 0 chr5 58467207 58467242 -94070017 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1031 4639 112 19 24 chr5 58469162 58469886 -94067373 + Lx2 LINE L1 6276 6996 -1 5 1031 962 125 0 20 chr5 58470328 58470462 -94066797 + B1_Mus1 SINE Alu 4 137 -11 5 1031 245 0 86 0 chr5 58470462 58470497 -94066762 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 6 1031 962 125 0 20 chr5 58470497 58470509 -94066750 + B1_Mus1 SINE Alu 138 147 -1 5 1031 4702 48 2 9 chr5 58470625 58471207 -94066052 - L1Md_F3 LINE L1 -10 6574 5997 6 1031 3706 73 2 0 chr5 58471363 58471842 -94065417 - L1_Mus1 LINE L1 -1 6566 6087 6 1031 339 78 0 0 chr5 58471926 58471977 -94065282 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1031 219 139 0 0 chr5 58471987 58472023 -94065236 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1031 222 158 0 0 chr5 58473377 58473415 -94063844 - MIR SINE MIR -38 224 187 6 1031 27 29 0 0 chr5 58474609 58474643 -94062616 + AT_rich Low_complexity Low_complexity 1 34 0 6 1031 408 40 0 0 chr5 58477208 58477258 -94060001 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1031 1214 66 6 12 chr5 58478407 58478576 -94058683 + L1_Mus3 LINE L1 6275 6442 -196 6 1031 183 42 0 0 chr5 58479696 58479720 -94057539 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1031 197 128 0 21 chr5 58479764 58479812 -94057447 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1031 250 259 24 24 chr5 58479825 58479908 -94057351 - MLT1A1 LTR MaLR -8 400 318 6 1031 1051 206 18 62 chr5 58480580 58480807 -94056452 - URR1B DNA MER1_type -1 224 8 6 1031 318 26 0 0 chr5 58481422 58481461 -94055798 + (TAAG)n Simple_repeat Simple_repeat 3 41 0 6 1031 534 114 0 0 chr5 58481776 58481864 -94055395 + (TAGA)n Simple_repeat Simple_repeat 1 88 0 6 1031 252 0 0 0 chr5 58483392 58483420 -94053839 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1031 1515 153 86 11 chr5 58483420 58483698 -94053561 + Lx3B LINE L1 6672 6970 -3 6 1031 267 31 0 0 chr5 58483699 58483731 -94053528 + (TAA)n Simple_repeat Simple_repeat 1 32 0 6 1031 1121 71 26 0 chr5 58485911 58486066 -94051193 - L1_Mus1 LINE L1 0 6567 6409 6 1031 23 0 0 0 chr5 58486431 58486454 -94050805 + AT_rich Low_complexity Low_complexity 1 23 0 6 1031 489 34 0 0 chr5 58486662 58486721 -94050538 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1031 355 340 10 10 chr5 58487126 58487230 -94050029 + ID_B1 SINE B4 20 123 -101 6 1031 2125 61 0 0 chr5 58487274 58487537 -94049722 + L1Md_F2 LINE L1 6199 6461 -121 6 1031 835 73 0 0 chr5 58488937 58489060 -94048199 - L1Md_F2 LINE L1 -12 6570 6448 6 1031 194 143 20 0 chr5 58489883 58489932 -94047327 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1031 248 104 42 0 chr5 58491558 58491606 -94045653 + (TTTTTG)n Simple_repeat Simple_repeat 5 54 0 6 1031 231 36 0 0 chr5 58493359 58493387 -94043872 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1031 1028 109 0 0 chr5 58493387 58493534 -94043725 - B1_Mm SINE Alu 0 147 1 6 1031 7496 178 42 24 chr5 58495390 58496829 -94040430 - Lx4B LINE L1 -4 7054 5589 6 1031 897 228 48 52 chr5 58496868 58497136 -94040123 - Lx9 LINE L1 -178 7466 7200 6 1031 371 383 15 10 chr5 58497827 58498022 -94039237 + RMER30 DNA MER1_type 5 200 -2 6 1031 1022 86 7 0 chr5 58499239 58499379 -94037880 + B1_Mus1 SINE Alu 1 141 -7 6 1031 279 0 0 0 chr5 58499382 58499413 -94037846 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1031 542 335 23 23 chr5 58499449 58499620 -94037639 + B4 SINE B4 107 277 -15 6 1031 24 67 0 0 chr5 58500841 58500886 -94036373 + AT_rich Low_complexity Low_complexity 1 45 0 1 1031 339 181 0 0 chr5 58500954 58501026 -94036233 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1031 477 122 0 0 chr5 58501026 58501100 -94036159 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 1031 285 89 0 0 chr5 58501133 58501178 -94036081 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1031 498 344 5 54 chr5 58501223 58501447 -94035812 - Lx7 LINE L1 -396 7300 7088 5 1031 304 264 154 21 chr5 58501457 58501600 -94035659 + Lx7 LINE L1 7520 7681 -15 6 1031 25 31 0 0 chr5 58505311 58505343 -94031916 + AT_rich Low_complexity Low_complexity 1 32 0 7 1031 29 47 0 0 chr5 58505494 58505537 -94031722 + AT_rich Low_complexity Low_complexity 1 43 0 8 1031 28 48 0 0 chr5 58505573 58505615 -94031644 + AT_rich Low_complexity Low_complexity 1 42 0 9 1031 423 0 0 0 chr5 58506605 58506652 -94030607 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1031 534 16 0 0 chr5 58507072 58507135 -94030124 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1031 782 150 0 11 chr5 58508766 58508948 -94028311 + CT-rich Low_complexity Low_complexity 1 180 0 1 1031 372 43 0 0 chr5 58508948 58508994 -94028265 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1031 339 329 103 56 chr5 58509802 58510198 -94027061 - MLT1D LTR MaLR -11 494 80 1 1031 241 318 0 23 chr5 58510242 58510329 -94026930 - MLT1D LTR MaLR -542 85 1 1 1031 342 0 0 0 chr5 58510425 58510463 -94026796 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1 1031 333 0 0 0 chr5 58511577 58511614 -94025645 + (TATAA)n Simple_repeat Simple_repeat 3 39 0 1 1031 22 56 0 0 chr5 58511951 58511987 -94025272 + AT_rich Low_complexity Low_complexity 1 36 0 1 1031 305 340 100 9 chr5 58514254 58514364 -94022895 - RSINE1 SINE B4 -44 121 2 1 1031 827 176 0 0 chr5 58515032 58515163 -94022096 - B1_Mur3 SINE Alu -17 132 2 1 1031 348 24 0 0 chr5 58515264 58515305 -94021954 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1031 549 222 113 26 chr5 58515305 58515499 -94021760 - Lx9 LINE L1 -192 7452 7242 2 1031 371 330 54 0 chr5 58516025 58516137 -94021122 + RSINE1 SINE B4 4 121 -44 2 1031 32 75 0 0 chr5 58516438 58516505 -94020754 + AT_rich Low_complexity Low_complexity 1 67 0 2 1031 1100 89 0 0 chr5 58516631 58516777 -94020482 - B1_Mus1 SINE Alu -1 147 2 2 1031 405 0 0 0 chr5 58516838 58516883 -94020376 + (TAA)n Simple_repeat Simple_repeat 1 45 0 2 1031 351 74 86 0 chr5 58517268 58517349 -94019910 + (CAAAC)n Simple_repeat Simple_repeat 2 89 0 2 1031 180 0 0 0 chr5 58517389 58517409 -94019850 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1031 4361 137 84 7 chr5 58517562 58518314 -94018945 + Lx2B LINE L1 6183 6992 -8 2 1031 500 0 17 0 chr5 58518535 58518595 -94018664 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1031 663 302 16 16 chr5 58518606 58518788 -94018471 - B3 SINE B2 -30 186 5 3 1031 264 59 0 0 chr5 58519257 58519291 -94017968 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1031 26 30 0 0 chr5 58523122 58523155 -94014104 + AT_rich Low_complexity Low_complexity 1 33 0 3 1031 203 88 29 0 chr5 58523204 58523238 -94014021 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1031 561 319 100 94 chr5 58524650 58525259 -94012000 - RLTR18 LTR ERVK -3 613 1 3 1031 182 118 29 0 chr5 58526048 58526082 -94011177 + (TTTC)n Simple_repeat Simple_repeat 3 37 0 3 1031 283 186 13 114 chr5 58526460 58526539 -94010720 + B3A SINE B2 1 71 -127 3 1031 225 0 0 0 chr5 58526624 58526649 -94010610 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1031 272 27 0 26 chr5 58527084 58527122 -94010137 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 3 1031 683 229 7 14 chr5 58527122 58527259 -94010000 - B1_Mur4 SINE Alu -12 138 1 3 1031 288 0 0 0 chr5 58527330 58527362 -94009897 + (TC)n Simple_repeat Simple_repeat 2 33 0 4 1031 333 0 0 0 chr5 58527379 58527416 -94009843 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1031 249 33 0 0 chr5 58527416 58527445 -94009814 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1031 23 68 0 0 chr5 58528413 58528457 -94008802 + AT_rich Low_complexity Low_complexity 1 44 0 4 1031 22 56 0 0 chr5 58528506 58528542 -94008717 + AT_rich Low_complexity Low_complexity 1 36 0 4 1031 2806 93 2 18 chr5 58530357 58530751 -94006508 - L1_Mus1 LINE L1 -4 6563 6176 4 1031 2951 100 25 44 chr5 58531031 58531222 -94006037 - MT2C_Mm LTR ERVL 0 475 277 4 1031 4812 78 6 0 chr5 58531222 58531863 -94005396 + L1_Mus1 LINE L1 5923 6567 0 4 1031 2951 100 25 44 chr5 58531863 58532153 -94005106 - MT2C_Mm LTR ERVL -199 276 3 4 1031 681 87 10 0 chr5 58532183 58532287 -94004972 + L1_Mus1 LINE L1 6463 6567 0 4 1031 288 185 0 3 chr5 58532504 58532569 -94004690 - MTD LTR MaLR -14 405 307 4 1031 289 218 34 47 chr5 58532578 58532727 -94004532 + T-rich Low_complexity Low_complexity 1 147 0 5 1031 343 358 39 39 chr5 58532746 58532900 -94004359 - MTD LTR MaLR -112 307 154 4 1031 8702 62 4 0 chr5 58533027 58534848 -94002411 - L1Md_F2 LINE L1 0 6582 4756 5 1031 276 53 0 0 chr5 58534863 58534901 -94002358 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1031 570 304 106 118 chr5 58535289 58535756 -94001503 - MTE-int LTR MaLR -779 591 154 5 1031 504 229 13 60 chr5 58536133 58536282 -94000977 - Lx7 LINE L1 -5 7691 7550 5 1031 765 31 0 0 chr5 58536283 58536379 -94000880 + (CTATG)n Simple_repeat Simple_repeat 4 99 0 5 1031 4168 143 171 47 chr5 58536394 58537265 -93999994 + L1_Mus4 LINE L1 5653 6631 -5 5 1031 439 177 49 117 chr5 58537270 58537475 -93999784 - Lx7 LINE L1 -150 7546 7356 5 1031 25 51 0 0 chr5 58537481 58537520 -93999739 + AT_rich Low_complexity Low_complexity 1 39 0 5 1031 1661 281 47 26 chr5 58537606 58538100 -93999159 - Lx6 LINE L1 -161 7299 6796 5 1031 4688 194 51 14 chr5 58538094 58538722 -93998537 - L1_Mur3 LINE L1 -3 5877 5235 5 1031 291 28 0 0 chr5 58538722 58538758 -93998501 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1031 4688 194 51 14 chr5 58538758 58539166 -93998093 - L1_Mur3 LINE L1 -646 5234 4802 5 1031 1488 194 57 40 chr5 58539167 58539779 -93997480 - L1_Mur3 LINE L1 -4288 1592 979 5 1031 959 278 58 47 chr5 58539773 58540135 -93997124 - L1_Mur3 LINE L1 -7087 641 276 5 1031 502 262 31 31 chr5 58540370 58540500 -93996759 - RMER15 LTR ERVL 0 575 446 6 1031 426 53 0 0 chr5 58542683 58542740 -93994519 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1031 296 256 175 40 chr5 58542788 58542914 -93994345 - MIRb SINE MIR -20 248 106 6 1031 1739 276 131 6 chr5 58543090 58543871 -93993388 - L1M2 LINE L1 -1530 4613 3736 6 1031 231 115 56 33 chr5 58543891 58543981 -93993278 + (TTTG)n Simple_repeat Simple_repeat 2 93 0 6 1031 240 302 63 55 chr5 58544477 58544715 -93992544 - L1M2 LINE L1 -2550 3593 3354 6 1031 291 257 113 42 chr5 58546627 58546769 -93990490 - MER34 LTR ERV1 -2 540 389 6 1031 658 324 23 10 chr5 58546829 58547125 -93990134 - MER34 LTR ERV1 -269 302 1 6 1031 395 113 0 14 chr5 58547929 58548001 -93989258 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 6 1031 3332 254 78 32 chr5 58548161 58549139 -93988120 - Lx6 LINE L1 -20 7440 6418 6 1031 1322 135 155 8 chr5 58549588 58549827 -93987432 - Lx2A1 LINE L1 -1 7007 6734 6 1031 531 168 11 0 chr5 58549824 58549919 -93987340 + Lx2A1 LINE L1 6084 6179 -829 7 1031 2893 102 43 5 chr5 58550071 58550512 -93986747 + Lx3A LINE L1 6504 6961 -20 7 1031 198 0 0 0 chr5 58550518 58550540 -93986719 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 7 1031 420 351 0 0 chr5 58550931 58551045 -93986214 + B1F1 SINE Alu 1 114 -35 7 1031 274 340 40 54 chr5 58551045 58551076 -93986183 + ID_B1 SINE B4 82 224 0 7 1031 330 356 14 64 chr5 58551890 58551936 -93985323 - Ricksha_c DNA MuDR -1157 891 848 7 1031 429 66 0 0 chr5 58551936 58551997 -93985262 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 7 1031 330 356 14 64 chr5 58551997 58552169 -93985090 - Ricksha_c DNA MuDR -1201 847 684 7 1031 285 252 136 8 chr5 58552382 58552514 -93984745 - L1MC3 LINE L1 -645 7140 6992 7 1031 188 86 0 28 chr5 58552533 58552569 -93984690 + (TTA)n Simple_repeat Simple_repeat 3 37 0 7 1031 28 0 0 0 chr5 58553170 58553198 -93984061 + AT_rich Low_complexity Low_complexity 1 28 0 7 1031 208 162 0 26 chr5 58555139 58555177 -93982082 + (CATA)n Simple_repeat Simple_repeat 1 37 0 8 1031 1529 161 59 59 chr5 58555830 58556153 -93981106 + ORR1A4 LTR MaLR 1 323 -6 8 1031 477 0 0 0 chr5 58556162 58556215 -93981044 + (CAA)n Simple_repeat Simple_repeat 2 54 0 8 1031 572 331 103 28 chr5 58556227 58556479 -93980780 + ORR1D2 LTR MaLR 1 271 -99 8 1031 2255 156 110 5 chr5 58556493 58556912 -93980347 + RLTR17 LTR ERVK 230 692 0 8 1031 417 333 21 14 chr5 58556939 58557079 -93980180 + ORR1D2-int LTR MaLR 6 146 -1224 8 1031 6897 55 1 21 chr5 58557100 58557995 -93979264 + L1Md_F2 LINE L1 5706 6582 0 8 1031 7926 48 2 7 chr5 58558008 58558992 -93978267 + L1Md_F2 LINE L1 5601 6579 -3 8 1031 1592 191 165 69 chr5 58559177 58559696 -93977563 - RMER4B LTR ERVK 0 585 17 8 1031 4727 133 24 19 chr5 58559741 58560529 -93976730 - Lx LINE L1 -4 6650 5859 8 1031 635 318 70 18 chr5 58561003 58561230 -93976029 + MTD LTR MaLR 50 288 -131 8 1031 2597 77 0 6 chr5 58561246 58561587 -93975672 - L1_Mus1 LINE L1 0 6567 6229 9 1031 685 125 0 0 chr5 58561587 58561683 -93975576 + L1_Mus1 LINE L1 6135 6230 -337 9 1031 243 138 0 65 chr5 58561715 58561777 -93975482 + T-rich Low_complexity Low_complexity 3 60 0 9 1031 189 0 0 0 chr5 58562980 58563001 -93974258 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1031 256 119 611 0 chr5 58563545 58563617 -93973642 + Lx6 LINE L1 6751 6866 -594 9 1031 464 214 143 53 chr5 58563951 58564084 -93973175 + Lx6 LINE L1 6861 7005 -455 9 1031 219 125 0 0 chr5 58564632 58564672 -93972587 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 9 1031 1507 292 139 30 chr5 58566830 58567605 -93969654 - Lx8 LINE L1 -352 7121 6215 9 1031 712 326 90 11 chr5 58567750 58568017 -93969242 + MamSINE1 SINE tRNA 1 288 -2 9 1031 21 57 0 0 chr5 58568378 58568413 -93968846 + AT_rich Low_complexity Low_complexity 1 35 0 9 1031 25 0 0 0 chr5 58568420 58568445 -93968814 + AT_rich Low_complexity Low_complexity 1 25 0 9 1031 245 191 0 45 chr5 58569268 58569334 -93967925 + A-rich Low_complexity Low_complexity 1 63 0 9 1031 4145 126 86 0 chr5 58569645 58569763 -93967496 + Lx2A1 LINE L1 6242 6394 -614 1 1031 663 13 0 0 chr5 58569763 58569839 -93967420 + (GA)n Simple_repeat Simple_repeat 2 77 0 1 1031 4145 126 86 0 chr5 58569839 58570421 -93966838 + Lx2A1 LINE L1 6395 7001 -7 1 1031 619 242 197 0 chr5 58570522 58570700 -93966559 - B3 SINE B2 -1 215 3 1 1031 480 249 38 100 chr5 58570710 58570920 -93966339 - B3A SINE B2 0 198 2 1 1031 1063 263 48 30 chr5 58570994 58571360 -93965899 + MTE2b LTR MaLR 5 421 0 1 1031 253 324 0 14 chr5 58573894 58573963 -93963296 + MamSINE1 SINE tRNA 22 89 -201 1 1031 293 348 144 38 chr5 58574243 58574479 -93962780 + MLT1F LTR MaLR 155 415 -133 1 1031 345 293 40 0 chr5 58575029 58575128 -93962131 + MLT1D LTR MaLR 253 355 -150 1 1031 316 295 17 103 chr5 58575745 58575862 -93961397 + PB1D9 SINE Alu 7 113 -7 1 1031 496 342 67 38 chr5 58576065 58576411 -93960848 - L1M5 LINE L1 -547 5615 5260 1 1031 288 289 129 40 chr5 58576510 58576611 -93960648 + RSINE1 SINE B4 16 125 -40 1 1031 614 242 30 8 chr5 58577073 58577206 -93960053 - B1_Mur1 SINE Alu -4 145 10 1 1031 29 0 0 0 chr5 58577721 58577750 -93959509 + AT_rich Low_complexity Low_complexity 1 29 0 1 1031 241 252 18 36 chr5 58577765 58577876 -93959383 - L1MEf LINE L1 -3853 2293 2185 1 1031 336 200 0 0 chr5 58578156 58578226 -93959033 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1031 291 320 68 49 chr5 58578349 58578714 -93958545 - L1MEf LINE L1 -4617 1625 1254 1 1031 320 77 0 19 chr5 58579523 58579576 -93957683 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 1 1031 207 0 0 0 chr5 58579638 58579661 -93957598 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1031 495 0 0 0 chr5 58579662 58579717 -93957542 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1031 420 20 0 0 chr5 58579717 58579765 -93957494 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1031 534 322 45 57 chr5 58580135 58580382 -93956877 + MTC LTR MaLR 2 245 -114 1 1031 22 56 0 0 chr5 58582314 58582350 -93954909 + AT_rich Low_complexity Low_complexity 1 36 0 1 1031 249 139 0 0 chr5 58582365 58582408 -93954851 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1031 910 229 84 5 chr5 58582505 58582707 -93954552 + MTC LTR MaLR 204 421 0 1 1031 4351 218 65 91 chr5 58582708 58583993 -93953266 + MTC-int LTR MaLR 2 1253 -5 1 1031 1807 204 93 10 chr5 58583998 58584385 -93952874 + MTC LTR MaLR 1 419 -2 1 1031 332 303 68 37 chr5 58584463 58584624 -93952635 - RLTR23 LTR ERV1 0 430 265 1 1031 1644 228 97 52 chr5 58585418 58585634 -93951625 + RLTR11A LTR ERVK 1 223 -305 1 1031 1179 35 0 0 chr5 58585634 58585778 -93951481 + (GGAGA)n Simple_repeat Simple_repeat 3 146 0 1 1031 1644 228 97 52 chr5 58585778 58586066 -93951193 + RLTR11A LTR ERVK 224 528 0 1 1031 25 0 0 0 chr5 58586417 58586442 -93950817 + AT_rich Low_complexity Low_complexity 1 25 0 1 1031 237 176 0 56 chr5 58586473 58586545 -93950714 + (CAAA)n Simple_repeat Simple_repeat 1 68 0 1 1031 2536 186 91 60 chr5 58586785 58587098 -93950161 + RMER20B LTR ERVK 4 331 -296 1 1031 447 19 0 0 chr5 58587098 58587150 -93950109 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1031 2536 186 91 60 chr5 58587150 58587441 -93949818 + RMER20B LTR ERVK 332 626 -1 1 1031 369 0 0 0 chr5 58587962 58588003 -93949256 + (CAA)n Simple_repeat Simple_repeat 2 42 0 1 1031 1940 259 24 59 chr5 58588022 58588596 -93948663 + RMER15 LTR ERVL 22 575 0 1 1031 1134 108 22 28 chr5 58588841 58589022 -93948237 - B2_Mm2 SINE B2 -14 181 2 1 1031 305 117 17 0 chr5 58589046 58589106 -93948153 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 1 128 967 251 98 13 chr5 58589106 58589413 -93947846 + Lx7 LINE L1 7364 7696 0 1 1032 23 33 0 0 chr5 58589519 58589549 -93947710 + AT_rich Low_complexity Low_complexity 1 30 0 1 1032 820 268 40 76 chr5 58589591 58589894 -93947365 + B4A SINE B4 1 292 0 1 1032 1953 122 9 51 chr5 58589939 58590275 -93946984 + RLTRETN_Mm LTR ERVK 1 322 0 1 1032 1452 238 133 0 chr5 58590295 58590737 -93946522 + Lx9 LINE L1 7101 7601 -43 1 1032 207 0 0 0 chr5 58590840 58590863 -93946396 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1032 315 370 34 39 chr5 58591829 58592037 -93945222 + L2a LINE L2 3049 3255 -171 1 1032 1154 260 117 34 chr5 58592686 58593072 -93944187 + MTD LTR MaLR 2 419 0 1 1032 1663 134 70 67 chr5 58594717 58595030 -93942229 - ORR1A3 LTR MaLR -12 314 1 1 1032 6523 173 23 48 chr5 58595030 58596682 -93940577 - ORR1A3-int LTR MaLR 0 1963 270 1 1032 588 14 0 0 chr5 58596956 58597025 -93940234 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1032 465 19 0 0 chr5 58597025 58597078 -93940181 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1032 216 0 0 0 chr5 58597079 58597103 -93940156 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1032 288 0 0 0 chr5 58597280 58597312 -93939947 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1032 294 29 0 0 chr5 58597312 58597346 -93939913 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1032 822 266 47 8 chr5 58598026 58598261 -93938998 - Lx6 LINE L1 -4 7456 7213 1 1032 314 253 62 21 chr5 58598414 58598511 -93938748 + B1_Mur2 SINE Alu 47 147 -2 1 1032 484 53 13 13 chr5 58598617 58598694 -93938565 + (TA)n Simple_repeat Simple_repeat 2 78 0 1 1032 364 314 85 56 chr5 58598945 58599215 -93938044 - MLT1D LTR MaLR -222 283 6 1 1032 2634 85 27 5 chr5 58599514 58599882 -93937377 + L1Md_F2 LINE L1 6195 6570 -12 1 1032 1304 75 0 6 chr5 58601461 58601635 -93935624 - B2_Mm2 SINE B2 -22 173 1 1 1032 180 97 0 0 chr5 58602032 58602063 -93935196 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 1 1032 252 241 171 27 chr5 58602063 58602174 -93935085 + MLT1L LTR MaLR 418 544 -66 1 1032 23 78 0 0 chr5 58602343 58602394 -93934865 + AT_rich Low_complexity Low_complexity 1 51 0 1 1032 257 237 81 88 chr5 58603037 58603185 -93934074 + LTR86A2 LTR ERVL 135 281 -227 1 1032 257 208 42 0 chr5 58603285 58603453 -93933806 + (TA)n Simple_repeat Simple_repeat 2 176 0 1 1032 23 92 0 0 chr5 58603596 58603661 -93933598 + AT_rich Low_complexity Low_complexity 1 65 0 1 1032 354 80 0 0 chr5 58603748 58603798 -93933461 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1032 423 52 0 0 chr5 58603798 58603856 -93933403 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1032 328 62 0 77 chr5 58603910 58603962 -93933297 + HAL1-3A_ME LINE L1 1976 2023 -835 1 1032 1793 203 48 6 chr5 58604396 58604753 -93932506 - ORR1C2 LTR MaLR -12 372 1 1 1032 29 47 0 0 chr5 58604932 58604975 -93932284 + AT_rich Low_complexity Low_complexity 1 43 0 1 1032 320 326 42 3 chr5 58605431 58605594 -93931665 - MLT1A1 LTR MaLR -176 189 25 1 1032 4185 155 28 0 chr5 58605654 58606370 -93930889 - Lx3B LINE L1 -3 6970 6235 1 1032 613 293 82 98 chr5 58606379 58606746 -93930513 - MTD LTR MaLR -54 365 5 1 1032 298 161 16 0 chr5 58608531 58608593 -93928666 - URR1A DNA MER1_type -85 141 79 1 1032 720 209 21 62 chr5 58608718 58608912 -93928347 - B2_Mm2 SINE B2 -8 187 2 1 1032 300 200 0 0 chr5 58608928 58609003 -93928256 + (CAT)n Simple_repeat Simple_repeat 3 77 0 1 1032 205 205 0 0 chr5 58609004 58609043 -93928216 + (TTA)n Simple_repeat Simple_repeat 3 41 0 1 1032 621 169 71 16 chr5 58609044 58609170 -93928089 - B1_Mur3 SINE Alu -12 137 5 1 1032 429 234 40 12 chr5 58609711 58609884 -93927375 - Lx9 LINE L1 -3 7641 7464 1 1032 311 96 19 0 chr5 58609890 58609942 -93927317 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1032 882 195 36 54 chr5 58609957 58610179 -93927080 - Lx9 LINE L1 -128 7516 7299 1 1032 445 188 173 29 chr5 58610224 58610328 -93926931 + RMER1B Other Other 594 712 -354 1 1032 1645 215 62 0 chr5 58610471 58610829 -93926430 + RMER1C Other Other 845 1224 -118 1 1032 336 102 0 0 chr5 58610888 58610937 -93926322 + (TCCC)n Simple_repeat Simple_repeat 2 50 0 1 1032 459 48 0 0 chr5 58610937 58610999 -93926260 + (TCTCTG)n Simple_repeat Simple_repeat 4 65 0 1 1032 802 156 37 0 chr5 58610999 58611134 -93926125 + RMER1C Other Other 1202 1341 -1 1 1032 273 57 0 0 chr5 58611613 58611648 -93925611 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1 1032 2877 177 47 73 chr5 58612011 58612707 -93924552 - RMER6C LTR ERVK -12 678 1 1 1032 572 322 24 5 chr5 58613249 58613458 -93923801 + ID_B1 SINE B4 2 214 -10 1 1032 601 313 50 35 chr5 58614205 58614217 -93923042 + B4A SINE B4 9 20 -272 1 1032 6132 71 2 8 chr5 58614217 58615041 -93922218 - L1Md_F2 LINE L1 0 6582 5764 1 1032 601 313 50 35 chr5 58615041 58615286 -93921973 + B4A SINE B4 21 270 -22 1 1032 365 0 22 0 chr5 58615720 58615765 -93921494 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1 1032 238 270 43 58 chr5 58616098 58616201 -93921058 - B1F SINE Alu 0 149 13 1 1032 350 279 39 117 chr5 58617450 58617527 -93919732 + Tigger7 DNA MER2_type 2256 2335 -156 1 1032 2730 105 92 6 chr5 58617527 58618017 -93919242 + RLTR47_MM LTR ERV1 1 532 0 1 1032 350 279 39 117 chr5 58618017 58618195 -93919064 + Tigger7 DNA MER2_type 2336 2491 0 1 1032 2777 200 32 69 chr5 58618651 58619302 -93917957 + RMER20B LTR ERVK 1 627 0 1 1032 21 0 0 0 chr5 58620628 58620649 -93916610 + AT_rich Low_complexity Low_complexity 1 21 0 1 1032 27 0 0 0 chr5 58621246 58621273 -93915986 + AT_rich Low_complexity Low_complexity 1 27 0 1 1032 803 346 53 4 chr5 58621308 58621572 -93915687 + B4A SINE B4 15 291 -1 1 1032 447 19 0 0 chr5 58621583 58621635 -93915624 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1032 729 311 54 57 chr5 58622292 58622589 -93914670 + MLT1D LTR MaLR 184 479 -26 1 1032 320 329 95 38 chr5 58622609 58622842 -93914417 + MLT1D-int LTR MaLR 1 248 -1487 1 1032 634 296 61 77 chr5 58622849 58623146 -93914113 + B4A SINE B4 1 292 0 1 1032 324 64 0 0 chr5 58623149 58623196 -93914063 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 1 1032 7495 145 13 2 chr5 58623247 58624481 -93912778 - Lx LINE L1 -994 5642 4398 1 1032 5361 121 2 5 chr5 58624481 58625276 -93911983 + Lx LINE L1 5642 6434 -220 1 1032 2297 66 28 6 chr5 58625280 58625598 -93911661 - IAPLTR2b LTR ERVK -2 325 1 1 1032 13222 84 10 14 chr5 58625598 58627431 -93909828 - IAPEz-int LTR ERVK 0 6481 4656 1 1032 1933 59 4 0 chr5 58627430 58627669 -93909590 - IAPEY3-int LTR ERVK -5183 2497 2258 1 1032 385 88 0 0 chr5 58627674 58627731 -93909528 - B1_Mus1 SINE Alu -91 57 1 1 1032 2126 75 0 0 chr5 58627731 58627999 -93909260 - IAPLTR4_I LTR ERVK -288 1182 915 1 1032 2530 122 18 13 chr5 58627985 58628441 -93908818 - IAPEz-int LTR ERVK -5904 577 1 1 1032 2097 105 25 9 chr5 58628443 58628761 -93908498 - IAPLTR2b LTR ERVK -2 325 3 1 1032 1249 161 0 26 chr5 58628763 58628992 -93908267 + Lx LINE L1 6431 6653 -1 1 1032 186 209 0 0 chr5 58629057 58629100 -93908159 + A-rich Low_complexity Low_complexity 1 43 0 2 1032 564 116 0 0 chr5 58629555 58629650 -93907609 + (TC)n Simple_repeat Simple_repeat 2 96 0 2 1032 1524 183 48 38 chr5 58629657 58630060 -93907199 - RLTR20A2 LTR ERVK -102 432 1 2 1032 285 298 67 97 chr5 58631149 58631283 -93905976 + MER5A DNA MER1_type 38 167 -22 2 1032 229 323 20 29 chr5 58631201 58631303 -93905956 - MER5A1 DNA MER1_type -52 114 14 2 1032 357 172 21 11 chr5 58632445 58632539 -93904720 + GA-rich Low_complexity Low_complexity 2 96 0 2 1032 1827 67 0 0 chr5 58632630 58632868 -93904391 - L1_Mus2 LINE L1 -418 6148 5911 2 1032 2483 75 42 6 chr5 58632868 58633229 -93904030 + L1_Mus2 LINE L1 6188 6561 -5 2 1032 300 281 0 15 chr5 58633784 58633849 -93903410 + ID4_ SINE ID 9 72 -11 2 1032 296 288 0 40 chr5 58633849 58633860 -93903399 + tRNA-Ala-GCY_ tRNA tRNA 3 75 0 2 1032 248 370 122 37 chr5 58634440 58634816 -93902443 - MLT1H LTR MaLR -115 434 27 2 1032 479 314 179 10 chr5 58635405 58635591 -93901668 + Tigger9b DNA MER2_type 8 216 -408 2 1032 555 16 0 0 chr5 58635591 58635655 -93901604 + (CA)n Simple_repeat Simple_repeat 2 65 0 2 1032 479 314 179 10 chr5 58635655 58635758 -93901501 + Tigger9b DNA MER2_type 217 345 -279 2 1032 223 266 10 31 chr5 58635779 58635876 -93901383 + T-rich Low_complexity Low_complexity 3 97 0 2 1032 225 345 41 41 chr5 58636043 58636164 -93901095 + PB1D10 SINE Alu 10 130 -19 2 1032 1169 298 65 10 chr5 58636165 58636562 -93900697 + Lx8 LINE L1 6268 6686 -787 2 1032 35228 47 0 3 chr5 58636599 58641849 -93895410 + L1Md_T LINE L1 260 5589 -297 2 1032 8323 37 0 1 chr5 58641849 58642846 -93894413 + L1Md_T LINE L1 5590 6585 0 2 1032 393 39 0 0 chr5 58642891 58642942 -93894317 + (CTA)n Simple_repeat Simple_repeat 2 52 0 2 1032 879 322 68 45 chr5 58642943 58643456 -93893803 + Lx8 LINE L1 6761 7285 -188 2 1032 218 268 36 12 chr5 58644915 58644998 -93892261 + CT-rich Low_complexity Low_complexity 3 87 0 2 1032 477 0 0 0 chr5 58645068 58645121 -93892138 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1032 513 0 0 0 chr5 58645121 58645177 -93892082 + (TA)n Simple_repeat Simple_repeat 1 57 0 2 1032 315 164 0 105 chr5 58645537 58645680 -93891579 + A-rich Low_complexity Low_complexity 3 130 0 2 1032 2148 261 86 46 chr5 58645680 58645832 -93891427 - Lx6 LINE L1 -19 7441 7288 2 1032 381 131 0 0 chr5 58645832 58645893 -93891366 + (CAG)n Simple_repeat Simple_repeat 2 62 0 2 1032 2534 248 64 111 chr5 58645893 58646396 -93890863 - Lx6 LINE L1 -173 7287 6764 2 1032 849 107 76 0 chr5 58646396 58646527 -93890732 + B1_Mus1 SINE Alu 2 142 -6 2 1032 2613 214 74 34 chr5 58646527 58647221 -93890038 - Lx6 LINE L1 -915 6781 6137 2 1032 1114 56 21 7 chr5 58647701 58647846 -93889413 - B1_Mm SINE Alu 0 147 1 2 1032 2336 52 0 25 chr5 58647847 58648162 -93889097 + L1Md_F2 LINE L1 6267 6573 -9 2 1032 483 48 0 0 chr5 58648167 58648229 -93889030 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1032 339 308 83 8 chr5 58648258 58648379 -93888880 - B3 SINE B2 -83 133 4 2 1032 615 310 75 27 chr5 58649751 58650160 -93887099 + Lx8 LINE L1 6973 7413 -60 2 1032 792 316 113 31 chr5 58650538 58650989 -93886270 + MER34 LTR ERV1 53 540 -2 2 1032 273 219 27 14 chr5 58651037 58651111 -93886148 + T-rich Low_complexity Low_complexity 1 75 0 2 1032 1022 73 9 26 chr5 58651111 58651338 -93885921 + (TCTA)n Simple_repeat Simple_repeat 1 223 0 2 1032 336 178 0 0 chr5 58652309 58652382 -93884877 + GA-rich Low_complexity Low_complexity 1 73 0 2 1032 1226 122 33 0 chr5 58652550 58652730 -93884529 + B2_Mm2 SINE B2 2 187 -8 2 1032 27 29 0 0 chr5 58652839 58652873 -93884386 + AT_rich Low_complexity Low_complexity 1 34 0 2 1032 297 0 0 0 chr5 58652900 58652933 -93884326 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2 1032 688 277 33 0 chr5 58653265 58653449 -93883810 - RMER15 LTR ERVL 0 575 386 2 1032 190 286 17 8 chr5 58654853 58654973 -93882286 + CT-rich Low_complexity Low_complexity 4 124 0 2 1032 267 31 0 0 chr5 58654966 58654998 -93882261 + (TCC)n Simple_repeat Simple_repeat 2 33 0 2 1032 489 34 0 0 chr5 58655000 58655059 -93882200 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 2 1032 25 51 0 0 chr5 58655742 58655781 -93881478 + AT_rich Low_complexity Low_complexity 1 39 0 2 1032 292 327 0 56 chr5 58656478 58656543 -93880716 - MLT1B LTR MaLR -5 385 326 2 1032 279 0 0 0 chr5 58656543 58656574 -93880685 + (CAA)n Simple_repeat Simple_repeat 1 31 0 2 1032 292 331 14 103 chr5 58656574 58656697 -93880562 - MLT1B LTR MaLR -65 325 193 2 1032 1126 261 65 19 chr5 58656895 58657203 -93880056 + MTD LTR MaLR 1 323 -96 2 1032 725 194 199 0 chr5 58657203 58657389 -93879870 - ORR1C2 LTR MaLR 0 384 162 2 1032 601 352 36 64 chr5 58657719 58658108 -93879151 + LTR55 LTR ERV 1 378 -170 2 1032 347 209 176 0 chr5 58658176 58658264 -93878995 - MTD LTR MaLR -9 410 307 2 1032 1078 201 51 0 chr5 58658264 58658478 -93878781 + URR1A DNA MER1_type 2 226 0 2 1032 1247 279 45 21 chr5 58658478 58658789 -93878470 - MTD LTR MaLR -94 325 6 2 1032 369 141 90 0 chr5 58660030 58660108 -93877151 + L1_Mus2 LINE L1 6481 6565 -1 2 1032 1457 228 49 6 chr5 58660283 58660479 -93876780 - ORR1C2 LTR MaLR 0 384 174 2 1032 681 13 0 0 chr5 58660479 58660557 -93876702 + (GA)n Simple_repeat Simple_repeat 1 78 0 2 1032 1457 228 49 6 chr5 58660557 58660726 -93876533 - ORR1C2 LTR MaLR -211 173 3 2 1032 297 0 0 0 chr5 58661602 58661635 -93875624 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1032 844 93 40 6 chr5 58663150 58663323 -93873936 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2 1032 632 155 39 3 chr5 58663415 58663699 -93873560 + (TCTA)n Simple_repeat Simple_repeat 1 293 0 2 1032 5633 112 19 15 chr5 58664439 58664999 -93872260 - Lx3A LINE L1 -513 6468 5915 2 1032 629 25 13 0 chr5 58664999 58665078 -93872181 + (TC)n Simple_repeat Simple_repeat 2 81 0 2 1032 6224 94 7 5 chr5 58665078 58665971 -93871288 - Lx3A LINE L1 -1067 5914 5016 2 1032 1512 56 30 0 chr5 58665984 58666182 -93871077 - L1_Mus1 LINE L1 -6 6561 6358 2 1032 2116 116 32 0 chr5 58666178 58666524 -93870735 - Lx3A LINE L1 -875 5011 4655 2 1032 2867 142 25 8 chr5 58666524 58667013 -93870246 + Lx3A LINE L1 6483 6979 -2 2 1032 22 80 0 0 chr5 58667371 58667421 -93869838 + AT_rich Low_complexity Low_complexity 1 50 0 2 1032 243 171 57 0 chr5 58667647 58667735 -93869524 + (TTATA)n Simple_repeat Simple_repeat 5 97 0 2 1032 7642 138 36 6 chr5 58668104 58669433 -93867826 - Lx3C LINE L1 -9 6967 5599 2 1032 1369 273 73 19 chr5 58669667 58670190 -93867069 - Lx2B LINE L1 -1 6999 6449 2 1032 378 0 0 0 chr5 58670232 58670274 -93866985 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1032 287 319 49 28 chr5 58670776 58670918 -93866341 + L1MC3 LINE L1 6645 6789 -996 2 1032 465 248 65 26 chr5 58671289 58671442 -93865817 + RMER10B LTR ERVL 194 352 -46 2 1032 21 36 0 0 chr5 58671531 58671559 -93865700 + AT_rich Low_complexity Low_complexity 1 28 0 2 1032 240 102 102 0 chr5 58671926 58671985 -93865274 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 2 1032 753 276 62 56 chr5 58672204 58672561 -93864698 + RLTR10D LTR ERVK 1 359 0 2 1032 305 313 45 26 chr5 58673006 58673314 -93863945 + L1ME4a LINE L1 5573 5886 -238 2 1032 286 216 135 8 chr5 58673333 58673459 -93863800 + L1ME4a LINE L1 5965 6106 -18 2 1032 23 54 0 0 chr5 58674122 58674159 -93863100 + AT_rich Low_complexity Low_complexity 1 37 0 2 1032 467 283 144 52 chr5 58674872 58675331 -93861928 - Looper DNA PiggyBac -458 1100 600 2 1032 239 234 13 13 chr5 58676077 58676155 -93861104 - Charlie2b DNA MER1_type -107 2675 2598 2 1032 2324 214 63 70 chr5 58676330 58677013 -93860246 - RMER6C LTR ERVK -12 678 1 2 1032 540 177 0 0 chr5 58677096 58677237 -93860022 + (TA)n Simple_repeat Simple_repeat 2 142 0 2 1032 270 56 0 0 chr5 58677238 58677274 -93859985 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1032 707 126 0 0 chr5 58677277 58677388 -93859871 - B1_Mm SINE Alu 0 147 37 2 1032 279 266 101 0 chr5 58677409 58677488 -93859771 + MTEb LTR MaLR 15 101 -258 2 1032 297 308 49 55 chr5 58677552 58677713 -93859546 + MTEb LTR MaLR 207 367 -12 2 1032 41 21 0 0 chr5 58677931 58677979 -93859280 + AT_rich Low_complexity Low_complexity 1 48 0 2 1032 22 0 0 0 chr5 58678427 58678449 -93858810 + AT_rich Low_complexity Low_complexity 1 22 0 2 1032 461 321 107 8 chr5 58678804 58679046 -93858213 + Lx8 LINE L1 7058 7323 -150 2 1032 746 272 56 5 chr5 58679815 58680011 -93857248 - B3 SINE B2 -10 206 1 2 1032 322 278 0 0 chr5 58680817 58680907 -93856352 + CT-rich Low_complexity Low_complexity 1 90 0 2 1032 482 323 51 6 chr5 58680926 58681082 -93856177 - RSINE1 SINE B4 0 165 3 2 1032 21 57 0 0 chr5 58681621 58681656 -93855603 + AT_rich Low_complexity Low_complexity 1 35 0 2 1032 601 369 55 55 chr5 58681735 58682119 -93855140 - MLT1F2 LTR MaLR -162 398 15 2 1032 1084 304 30 38 chr5 58682792 58682841 -93854418 + Lx8 LINE L1 6564 6613 -860 2 1032 315 0 0 0 chr5 58682841 58682876 -93854383 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1032 1084 304 30 38 chr5 58682876 58683287 -93853972 + Lx8 LINE L1 6614 7021 -452 2 1032 2980 76 8 8 chr5 58683287 58683686 -93853573 + L1_Mus1 LINE L1 6169 6567 0 2 1032 1084 304 30 38 chr5 58683686 58683699 -93853560 + Lx8 LINE L1 7022 7033 -440 2 1032 1323 230 57 26 chr5 58683735 58684087 -93853172 + RLTR31_Mm LTR ERVK 199 561 0 2 1032 445 300 75 62 chr5 58684098 58684325 -93852934 - Tigger5 DNA MER2_type -2163 243 14 2 1032 903 94 0 59 chr5 58684733 58684869 -93852390 + B1_Mus1 SINE Alu 2 129 -19 2 1032 468 314 112 58 chr5 58686204 58686410 -93850849 + ORR1E LTR MaLR 1 217 -153 2 1032 6945 97 4 8 chr5 58687483 58688732 -93848527 - L1_Mus2 LINE L1 0 6566 5289 2 1032 456 294 24 40 chr5 58689611 58689735 -93847524 - RSINE1 SINE B4 -2 163 42 2 1032 26873 112 17 2 chr5 58690302 58693349 -93843910 - L1_Mus2 LINE L1 0 6569 3485 2 1032 237 33 0 0 chr5 58693349 58693379 -93843880 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1032 26873 124 23 3 chr5 58693379 58693966 -93843293 - L1_Mus2 LINE L1 -2402 3484 2872 2 1032 662 12 24 0 chr5 58693966 58694048 -93843211 + (TTTC)n Simple_repeat Simple_repeat 3 86 0 2 1032 26873 160 36 26 chr5 58694048 58696561 -93840698 - L1_Mus2 LINE L1 -3015 2871 355 2 1032 564 251 17 119 chr5 58696583 58696858 -93840401 - L1VL1 LINE L1 -5928 494 57 2 1032 38540 16 1 6 chr5 58696956 58703153 -93834106 - L1Md_A LINE L1 -3 6579 416 2 1032 2246 101 33 57 chr5 58703616 58704005 -93833254 + L1Md_F2 LINE L1 6191 6570 -12 3 1032 326 248 26 0 chr5 58704583 58704700 -93832559 - Lx9 LINE L1 -9 7635 7516 3 1032 279 0 0 0 chr5 58704745 58704776 -93832483 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1032 450 0 0 0 chr5 58704776 58704825 -93832434 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1032 1310 227 18 38 chr5 58704904 58705247 -93832012 + L1_Rod LINE L1 5366 5701 -146 3 1032 376 240 20 19 chr5 58707886 58707989 -93829270 - MTEb LTR MaLR 0 374 264 3 1032 2448 106 3 0 chr5 58708021 58708362 -93828897 - MTA_Mm LTR MaLR 0 396 55 3 1032 980 98 7 7 chr5 58708362 58708516 -93828743 + L1VL1 LINE L1 111 264 -6158 3 1032 1538 144 30 0 chr5 58708518 58708782 -93828477 + L1Md_F LINE L1 399 670 -5849 3 1032 2286 95 261 27 chr5 58708782 58709226 -93828033 - RLTR6_Mm LTR ERV1 -70 584 37 3 1032 60972 16 14 1 chr5 58709335 58716946 -93820313 - RLTR6-int LTR ERV1 0 7778 1 3 1032 2416 95 249 28 chr5 58716946 58717412 -93819847 - RLTR6_Mm LTR ERV1 -49 605 37 3 1032 1072 49 0 7 chr5 58717516 58717661 -93819598 + L1Md_F LINE L1 663 806 -5713 3 1032 22 35 0 0 chr5 58717739 58717768 -93819491 + AT_rich Low_complexity Low_complexity 1 29 0 3 1032 513 299 129 24 chr5 58717777 58718262 -93818997 - L1MA7 LINE L1 -6 6285 5757 3 1032 201 167 0 0 chr5 58718337 58718373 -93818886 + T-rich Low_complexity Low_complexity 1 36 0 3 1032 246 95 0 0 chr5 58718893 58718935 -93818324 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1032 265 250 56 0 chr5 58719127 58719199 -93818060 + RMER15-int LTR ERVL 2399 2474 -2525 3 1032 1024 303 91 62 chr5 58719324 58720234 -93817025 + Lx8 LINE L1 6237 7173 -300 3 1033 344 284 17 25 chr5 58720312 58720431 -93816828 + RMER15 LTR ERVL 422 539 -36 3 1033 216 0 0 0 chr5 58721001 58721025 -93816234 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1033 23 0 0 0 chr5 58721848 58721871 -93815388 + AT_rich Low_complexity Low_complexity 1 23 0 3 1033 405 0 0 0 chr5 58722554 58722599 -93814660 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1033 779 365 11 38 chr5 58723504 58723869 -93813390 - MLT1A0 LTR MaLR -5 360 6 3 1033 22 35 0 0 chr5 58723910 58723939 -93813320 + AT_rich Low_complexity Low_complexity 1 29 0 3 1033 22 0 0 0 chr5 58724039 58724061 -93813198 + AT_rich Low_complexity Low_complexity 1 22 0 3 1033 405 0 0 0 chr5 58724360 58724405 -93812854 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1033 434 278 93 16 chr5 58725765 58725959 -93811300 - MER2 DNA MER2_type -47 298 90 3 1033 551 339 53 13 chr5 58726056 58726355 -93810904 + Lx9 LINE L1 6873 7183 -461 3 1033 4766 72 11 5 chr5 58726391 58727033 -93810226 - L1Md_F2 LINE L1 -11 6571 5926 3 1033 281 235 0 29 chr5 58727035 58727105 -93810154 + Lx9 LINE L1 7190 7257 -387 3 1033 1457 191 64 7 chr5 58727119 58727399 -93809860 + ORR1B2 LTR MaLR 1 296 -71 3 1033 385 316 35 49 chr5 58727426 58727629 -93809630 + Lx9 LINE L1 7267 7466 -178 3 1033 3528 227 77 26 chr5 58727727 58728670 -93808589 - Lx2B LINE L1 -8 6992 6002 3 1033 405 0 0 0 chr5 58729274 58729319 -93807940 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1033 198 0 0 0 chr5 58729599 58729621 -93807638 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 3 1033 262 336 24 40 chr5 58729633 58729759 -93807500 - B1F2 SINE Alu 0 147 24 3 1033 392 104 15 0 chr5 58731285 58731352 -93805907 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 3 1033 7331 72 7 16 chr5 58732762 58733752 -93803507 + L1Md_F2 LINE L1 5590 6570 -12 3 1033 312 91 0 0 chr5 58733774 58733818 -93803441 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1033 297 100 0 0 chr5 58733952 58734002 -93803257 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 1033 476 284 91 25 chr5 58734052 58734251 -93803008 + L1M4 LINE L1 70 281 -6261 3 1033 1574 283 86 48 chr5 58734358 58735022 -93802237 - RLTR40 LTR ERVK -20 797 109 3 1033 7072 97 6 11 chr5 58735022 58736052 -93801207 + L1_Mus4 LINE L1 5611 6635 -1 3 1033 377 294 43 35 chr5 58736056 58736197 -93801062 - RLTR40 LTR ERVK -675 142 1 3 1033 305 322 98 69 chr5 58736600 58736877 -93800382 + B4A SINE B4 2 286 -6 3 1033 211 135 27 0 chr5 58736932 58736969 -93800290 + CT-rich Low_complexity Low_complexity 1 38 0 3 1033 7482 49 3 4 chr5 58737477 58738415 -93798844 - L1Md_F2 LINE L1 -3 6579 5643 3 1033 6685 37 0 0 chr5 58738415 58739220 -93798039 + L1Md_F2 LINE L1 4845 5649 -234 3 1033 1410 135 9 0 chr5 58739905 58740134 -93797125 - L1_Mus3 LINE L1 -5 6633 6403 3 1033 717 43 11 0 chr5 58740135 58740229 -93797030 + L1_Mm LINE L1 5345 5439 -444 3 1033 25 75 0 0 chr5 58740278 58740331 -93796928 + AT_rich Low_complexity Low_complexity 1 53 0 3 1033 1040 104 0 8 chr5 58740515 58740759 -93796500 + (TTCTC)n Simple_repeat Simple_repeat 1 241 0 3 1033 363 105 0 0 chr5 58740822 58740879 -93796380 + (TCC)n Simple_repeat Simple_repeat 2 58 0 3 1033 201 154 0 0 chr5 58740881 58740920 -93796339 + CT-rich Low_complexity Low_complexity 2 40 0 3 1033 288 167 86 102 chr5 58741521 58741708 -93795551 - RMER17C LTR ERVK -137 273 90 3 1033 1157 124 56 0 chr5 58742069 58742247 -93795012 - B2_Mm2 SINE B2 -7 188 1 3 1033 1447 110 0 9 chr5 58743093 58743314 -93793945 - L1Md_F2 LINE L1 -11 6571 6353 3 1033 7230 72 6 0 chr5 58743314 58744279 -93792980 + L1_Mm LINE L1 3948 4918 -965 3 1033 467 311 30 0 chr5 58744290 58744422 -93792837 - Lx8 LINE L1 -233 7240 7105 3 1033 1376 209 29 21 chr5 58744431 58744813 -93792446 - MTC LTR MaLR -8 413 1 3 1033 290 323 79 0 chr5 58744913 58745040 -93792219 - Lx8 LINE L1 -510 6963 6827 3 1033 359 82 55 0 chr5 58746369 58746442 -93790817 + (TA)n Simple_repeat Simple_repeat 1 77 0 3 1033 32 67 0 0 chr5 58747519 58747579 -93789680 + AT_rich Low_complexity Low_complexity 1 60 0 3 1033 22 0 0 0 chr5 58747606 58747628 -93789631 + AT_rich Low_complexity Low_complexity 1 22 0 3 1033 24 0 0 0 chr5 58747863 58747887 -93789372 + AT_rich Low_complexity Low_complexity 1 24 0 3 1033 448 325 8 16 chr5 58748213 58748341 -93788918 + B4 SINE B4 43 169 -123 3 1033 1169 233 10 17 chr5 58748349 58748642 -93788617 - MYSERV6-int LTR ERVK -1185 7774 7484 3 1033 1063 179 0 15 chr5 58748641 58748839 -93788420 - MYSERV6-int LTR ERVK -3529 5430 5236 3 1033 1254 246 106 17 chr5 58748839 58749187 -93788072 - ORR1B1 LTR MaLR 0 394 16 3 1033 839 171 0 112 chr5 58749187 58749384 -93787875 - MYSERV6-int LTR ERVK -3744 5215 5041 3 1033 237 261 0 0 chr5 58749384 58749430 -93787829 - ID_B1 SINE B4 -100 124 79 3 1033 7197 158 48 89 chr5 58749477 58750183 -93787076 - MYSERV6-int LTR ERVK -3931 5028 4374 3 1033 2331 76 0 0 chr5 58750183 58750486 -93786773 + L1_Mus1 LINE L1 6262 6564 -3 3 1033 7197 158 48 89 chr5 58750486 58750814 -93786445 - MYSERV6-int LTR ERVK -4586 4373 4079 3 1033 2779 146 61 10 chr5 58750814 58751305 -93785954 - Lx2 LINE L1 0 6997 6482 3 1033 7197 158 48 89 chr5 58751305 58751979 -93785280 - MYSERV6-int LTR ERVK -4881 4078 3390 3 1033 4520 175 41 3 chr5 58751986 58752848 -93784411 + Lx2B LINE L1 4898 5791 -86 3 1033 7815 61 0 12 chr5 58753391 58754476 -93782783 - L1_Mus1 LINE L1 0 6567 5494 3 1033 1035 25 0 0 chr5 58754802 58754924 -93782335 + (GGAAA)n Simple_repeat Simple_repeat 3 124 0 3 1033 3651 200 30 1 chr5 58754944 58755690 -93781569 + Lx2B LINE L1 5789 6555 -445 3 1033 13731 154 43 36 chr5 58755694 58757556 -93779703 - MYSERV6-int LTR ERVK -6089 2870 1032 3 1033 195 42 0 0 chr5 58757556 58757580 -93779679 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1033 13731 154 43 36 chr5 58757580 58758375 -93778884 - MYSERV6-int LTR ERVK -7928 1031 194 3 1033 5676 90 18 2 chr5 58758375 58759173 -93778086 - L1_Mus3 LINE L1 -2 6636 5827 3 1033 13731 154 43 36 chr5 58759173 58759250 -93778009 - MYSERV6-int LTR ERVK -8766 193 117 3 1033 227 167 0 32 chr5 58759681 58759730 -93777529 + T-rich Low_complexity Low_complexity 12 60 0 3 1033 297 0 0 0 chr5 58759730 58759763 -93777496 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1033 360 0 0 0 chr5 58759763 58759802 -93777457 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1033 227 167 0 32 chr5 58759802 58759813 -93777446 + T-rich Low_complexity Low_complexity 2 11 0 3 1033 2264 188 9 36 chr5 58759813 58760254 -93777005 - RMER6B LTR ERVK -32 429 1 3 1033 567 29 0 0 chr5 58760796 58760865 -93776394 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1033 1507 244 37 12 chr5 58761558 58761965 -93775294 - MTD LTR MaLR 0 419 3 3 1033 233 288 225 0 chr5 58762224 58762304 -93774955 + MLT1A1 LTR MaLR 264 361 -47 3 1033 677 242 79 129 chr5 58763391 58763694 -93773565 + Lx6 LINE L1 6652 6939 -521 3 1033 667 260 30 35 chr5 58763691 58763922 -93773337 + Lx6 LINE L1 7201 7430 -30 3 1033 288 0 0 0 chr5 58764589 58764621 -93772638 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1033 600 14 0 0 chr5 58764621 58764689 -93772570 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1033 618 246 14 7 chr5 58764740 58764883 -93772376 + B1_Mur2 SINE Alu 1 144 -5 3 1033 1163 49 7 0 chr5 58765070 58765214 -93772045 - B1_Mus1 SINE Alu -1 147 3 3 1033 22 35 0 0 chr5 58766025 58766054 -93771205 + AT_rich Low_complexity Low_complexity 1 29 0 3 1033 1029 137 0 0 chr5 58766286 58766432 -93770827 + B1_Mus1 SINE Alu 1 146 -2 3 1033 243 0 0 0 chr5 58766432 58766459 -93770800 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1033 296 330 148 80 chr5 58767230 58767467 -93769792 + RMER15 LTR ERVL 305 557 -18 3 1033 379 323 70 37 chr5 58767891 58768004 -93769255 + B4A SINE B4 108 226 -66 3 1033 192 40 0 0 chr5 58768004 58768029 -93769230 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3 1033 379 314 69 38 chr5 58768029 58768092 -93769167 + B4A SINE B4 227 291 -1 3 1033 642 37 0 0 chr5 58768150 58768231 -93769028 + (CA)n Simple_repeat Simple_repeat 2 82 0 3 1033 405 0 0 0 chr5 58768231 58768275 -93768984 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1033 313 373 31 77 chr5 58768856 58769117 -93768142 + MLT1H LTR MaLR 56 304 -245 3 1033 23 33 0 0 chr5 58770805 58770835 -93766424 + AT_rich Low_complexity Low_complexity 1 30 0 3 1033 195 69 0 0 chr5 58771182 58771211 -93766048 + (TAGA)n Simple_repeat Simple_repeat 4 32 0 3 1033 958 204 45 5 chr5 58771214 58771435 -93765824 + L1_Mur2 LINE L1 2829 3058 -2819 3 1033 2472 228 75 41 chr5 58771472 58772555 -93764704 + L1_Mus1 LINE L1 269 1205 -5433 3 1033 25052 123 27 94 chr5 58772554 58775122 -93762137 + L1_Mus1 LINE L1 1073 3426 -2457 3 1033 7807 43 31 0 chr5 58775122 58776089 -93761170 + L1Md_F3 LINE L1 5587 6583 -1 3 1033 25052 121 26 98 chr5 58776089 58776173 -93761086 + L1_Mus1 LINE L1 3427 3427 -2456 3 1033 405 0 0 0 chr5 58776173 58776218 -93761041 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1033 438 301 22 22 chr5 58776218 58776357 -93760902 - RSINE1 SINE B4 -24 141 3 3 1033 25052 110 42 18 chr5 58776357 58779615 -93757644 + L1_Mus1 LINE L1 3427 6567 0 3 1033 10247 181 39 10 chr5 58779616 58781804 -93755455 + L1_Mur2 LINE L1 3048 5298 -579 3 1033 1129 187 94 13 chr5 58781790 58782023 -93755236 + Lx4A LINE L1 6805 7056 -2 3 1033 1847 185 80 15 chr5 58782235 58782625 -93754634 + Lx3C LINE L1 6560 6974 -2 4 1033 31 44 0 0 chr5 58782813 58782858 -93754401 + AT_rich Low_complexity Low_complexity 1 45 0 4 1033 5122 206 47 11 chr5 58783290 58785024 -93752235 - Lx4B LINE L1 -262 6796 5211 4 1033 209 293 61 0 chr5 58785196 58785278 -93751981 + L2a LINE L2 3340 3426 0 4 1033 657 221 117 5 chr5 58785998 58786212 -93751047 - Lx9 LINE L1 -1 7643 7406 4 1033 2395 87 11 14 chr5 58786343 58786692 -93750567 + L1_Mus2 LINE L1 6219 6566 0 4 1033 335 289 184 7 chr5 58787041 58787177 -93750082 - RSINE1 SINE B4 -3 162 3 4 1033 442 364 22 18 chr5 58788412 58788686 -93748573 - B4A SINE B4 -16 276 2 4 1033 3321 32 5 0 chr5 58790196 58790596 -93746663 - L1Md_A LINE L1 0 6582 6181 4 1033 37918 30 1 1 chr5 58790842 58797676 -93739583 - L1Md_T LINE L1 0 6585 1 4 1033 267 31 0 0 chr5 58797771 58797803 -93739456 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1033 2808 68 0 0 chr5 58797817 58798183 -93739076 - L1Md_T LINE L1 0 6582 6217 4 1033 352 330 108 17 chr5 58798375 58798606 -93738653 - L2 LINE L2 -509 2910 2659 4 1033 25 31 0 0 chr5 58800258 58800290 -93736969 + AT_rich Low_complexity Low_complexity 1 32 0 4 1033 329 275 32 21 chr5 58800768 58800880 -93736379 - Lx7 LINE L1 -7 7689 7594 4 1033 6323 200 22 7 chr5 58800910 58802249 -93735010 - L1_Mur3 LINE L1 -7 5873 4514 4 1033 1628 73 5 0 chr5 58802271 58802480 -93734779 + L1_Mm LINE L1 5378 5616 -562 4 1033 7679 65 0 12 chr5 58802480 58803473 -93733786 + L1Md_F2 LINE L1 5588 6568 -14 4 1033 826 258 4 26 chr5 58803473 58803496 -93733763 + L1_Mm LINE L1 5617 5634 -544 4 1033 472 230 24 0 chr5 58803474 58803600 -93733659 - L1_Mur3 LINE L1 -1368 4512 4384 4 1033 2137 285 62 112 chr5 58803621 58805221 -93732038 - RMER1A Other Other -6 1024 1 4 1033 2589 187 116 17 chr5 58805612 58806243 -93731016 - L1_Mur3 LINE L1 -1599 4281 3589 4 1033 578 282 8 8 chr5 58806243 58806368 -93730891 + B1_Mm SINE Alu 1 125 -22 4 1033 264 100 0 0 chr5 58806402 58806442 -93730817 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1033 2309 199 73 16 chr5 58806448 58807076 -93730183 - L1_Mur3 LINE L1 -3833 2047 1384 4 1033 1180 260 43 0 chr5 58807117 58807265 -93729994 - L1_Mur3 LINE L1 -7402 326 167 4 1033 2064 93 99 0 chr5 58807265 58807588 -93729671 + IAPEY2_LTR LTR ERVK 1 355 -2 4 1033 1180 260 43 0 chr5 58807588 58807720 -93729539 - L1_Mur3 LINE L1 -7562 166 35 4 1033 296 305 38 8 chr5 58807818 58807950 -93729309 + L1M4c LINE L1 18 153 -6231 4 1033 294 303 72 34 chr5 58808412 58808675 -93728584 + L1MB3 LINE L1 5911 6183 0 4 1033 234 278 0 27 chr5 58808853 58808927 -93728332 + MLT2B4 LTR ERVL 89 160 -396 4 1033 2526 131 2 2 chr5 58809013 58809427 -93727832 - L1_Mm LINE L1 -1167 4716 4303 4 1033 909 132 0 13 chr5 58809566 58809719 -93727540 + L1Md_F2 LINE L1 6424 6574 -8 4 1033 30 27 0 0 chr5 58809846 58809883 -93727376 + AT_rich Low_complexity Low_complexity 1 37 0 4 1033 2871 186 193 30 chr5 58810329 58810748 -93726511 - RMER17A2 LTR ERVK 0 906 457 4 1033 531 0 0 0 chr5 58810748 58810807 -93726452 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1033 2871 186 193 30 chr5 58810807 58811166 -93726093 - RMER17A2 LTR ERVK -450 456 2 4 1033 803 284 77 84 chr5 58813311 58813493 -93723766 - Lx8 LINE L1 -405 7068 6874 4 1033 1240 159 9 9 chr5 58813493 58813721 -93723538 + Lx2 LINE L1 6770 6997 0 4 1033 803 284 77 84 chr5 58813721 58813804 -93723455 - Lx8 LINE L1 -600 6873 6807 4 1033 1092 82 7 0 chr5 58813804 58813950 -93723309 - B1_Mm SINE Alu 0 147 1 4 1033 803 284 77 84 chr5 58813950 58814098 -93723161 - Lx8 LINE L1 -667 6806 6657 4 1033 576 326 11 5 chr5 58814121 58814309 -93722950 - Lx8 LINE L1 -1096 6377 6189 4 1033 631 274 78 26 chr5 58814686 58815037 -93722222 - Lx8 LINE L1 -1076 5924 5532 4 1033 234 0 0 0 chr5 58815037 58815063 -93722196 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 4 1033 5341 220 81 74 chr5 58815076 58815291 -93721968 - Lx5 LINE L1 -8 7042 6835 4 1033 2903 59 3 5 chr5 58815291 58815666 -93721593 + L1_Mus2 LINE L1 6192 6565 -1 4 1033 5341 195 57 56 chr5 58815666 58817496 -93719763 - Lx5 LINE L1 -216 6834 4976 4 1033 546 302 31 134 chr5 58817503 58817978 -93719281 - L1_Mur3 LINE L1 -539 5761 5297 4 1033 3253 92 37 0 chr5 58818209 58818666 -93718593 - L1_Mus1 LINE L1 0 6567 6094 4 1033 314 225 33 33 chr5 58819099 58819191 -93718068 - Lx5 LINE L1 -52 6998 6907 4 1033 182 62 31 0 chr5 58819450 58819482 -93717777 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1033 35 0 0 0 chr5 58820175 58820210 -93717049 + AT_rich Low_complexity Low_complexity 1 35 0 4 1033 235 232 11 99 chr5 58820495 58820586 -93716673 - Charlie9 DNA MER1_type -2118 639 557 4 1033 258 189 160 13 chr5 58820685 58820760 -93716499 - MIRb SINE MIR -21 247 162 4 1033 187 135 0 51 chr5 58821231 58821270 -93715989 + MIR SINE MIR 108 144 -64 4 1033 21 57 0 0 chr5 58821925 58821960 -93715299 + AT_rich Low_complexity Low_complexity 1 35 0 4 1033 31 102 0 0 chr5 58822923 58823031 -93714228 + AT_rich Low_complexity Low_complexity 1 108 0 4 1033 2599 148 11 37 chr5 58824763 58825225 -93712034 + Lx2 LINE L1 6546 6995 -2 4 1033 1344 86 5 11 chr5 58825306 58825494 -93711765 - B2_Mm1t SINE B2 -6 187 1 4 1033 5608 86 27 1 chr5 58825516 58826305 -93710954 - Lx3_Mus LINE L1 0 7009 6201 4 1033 417 339 0 0 chr5 58826613 58826722 -93710537 - RSINE1 SINE B4 -46 119 11 4 1033 24 32 0 0 chr5 58826730 58826761 -93710498 + AT_rich Low_complexity Low_complexity 1 31 0 4 1033 539 66 0 13 chr5 58827362 58827439 -93709820 + (TTA)n Simple_repeat Simple_repeat 1 76 0 4 1033 32 26 0 0 chr5 58829874 58829913 -93707346 + AT_rich Low_complexity Low_complexity 1 39 0 4 1033 2019 126 22 12 chr5 58829914 58830235 -93707024 - Lx3A LINE L1 -6 6975 6652 4 1033 2210 138 6 17 chr5 58830240 58830600 -93706659 - Lx3A LINE L1 -758 6223 5868 4 1033 1689 162 33 42 chr5 58830912 58831361 -93705898 - RMER17C LTR ERVK -519 439 16 4 1033 2008 158 12 0 chr5 58831587 58831923 -93705336 + Lx3B LINE L1 6632 6971 -2 4 1033 298 61 41 0 chr5 58831928 58831977 -93705282 + (TAA)n Simple_repeat Simple_repeat 2 52 0 4 1033 276 102 0 0 chr5 58831995 58832044 -93705215 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 4 1033 421 350 0 28 chr5 58832047 58832191 -93705068 - B3A SINE B2 -56 142 3 4 1033 498 301 30 60 chr5 58832623 58832832 -93704427 - B3A SINE B2 0 216 11 4 1033 3224 173 28 2 chr5 58832877 58833457 -93703802 + Lx2B LINE L1 6406 7000 0 4 1033 559 163 16 0 chr5 58834190 58834313 -93702946 + (CA)n Simple_repeat Simple_repeat 1 125 0 4 1033 235 325 0 78 chr5 58835516 58835606 -93701653 - L3 LINE CR1 -4 4485 4403 4 1033 349 244 23 11 chr5 58835752 58835839 -93701420 + Tigger14a DNA MER2_type 99 186 -138 4 1033 264 330 17 94 chr5 58836480 58836597 -93700662 + PB1D7 SINE Alu 6 113 -7 4 1033 21 36 0 0 chr5 58836626 58836654 -93700605 + AT_rich Low_complexity Low_complexity 1 28 0 4 1033 2248 310 63 40 chr5 58837301 58838512 -93698747 - Lx9 LINE L1 -18 7626 6389 4 1033 248 279 0 8 chr5 58838589 58838712 -93698547 + (TA)n Simple_repeat Simple_repeat 2 123 0 4 1033 1636 229 199 5 chr5 58838776 58839419 -93697840 - Lx5 LINE L1 -1 7049 6282 4 1033 570 192 92 0 chr5 58839413 58839533 -93697726 + Lx5 LINE L1 6156 6286 -764 4 1033 219 36 0 0 chr5 58839707 58839735 -93697524 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 1033 552 112 12 0 chr5 58839735 58839815 -93697444 - B1_Mur4 SINE Alu -8 142 62 4 1033 181 235 0 56 chr5 58839930 58839984 -93697275 + MIR SINE MIR 122 172 -90 4 1033 25 0 0 0 chr5 58840205 58840230 -93697029 + AT_rich Low_complexity Low_complexity 1 25 0 4 1033 394 338 47 66 chr5 58840802 58841014 -93696245 - B4A SINE B4 0 292 85 4 1033 3435 20 5 0 chr5 58842309 58842703 -93694556 - MTA_Mm LTR MaLR 0 396 1 4 1033 204 97 0 0 chr5 58843236 58843267 -93693992 + (CTTA)n Simple_repeat Simple_repeat 1 31 0 4 1033 1245 228 220 46 chr5 58843758 58844277 -93692982 - RMER19C LTR ERVK 0 611 3 4 1033 260 273 11 33 chr5 58844717 58844808 -93692451 - MLT1A1 LTR MaLR 0 408 320 4 1033 1053 28 0 34 chr5 58845081 58845227 -93692032 - L1Md_F3 LINE L1 -14 6570 6430 4 1033 333 68 0 0 chr5 58845516 58845560 -93691699 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1033 1081 208 128 39 chr5 58846033 58846338 -93690921 - IAPEY3_LTR LTR ERVK 0 332 1 4 1033 489 17 0 0 chr5 58846636 58846694 -93690565 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1033 247 358 32 0 chr5 58847617 58847712 -93689547 + RSINE1 SINE B4 44 141 -24 4 1033 1124 285 58 25 chr5 58847738 58848098 -93689161 - ORR1D1 LTR MaLR 0 374 3 4 1033 228 111 0 0 chr5 58848289 58848325 -93688934 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1033 446 0 19 0 chr5 58848519 58848573 -93688686 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1033 24 0 0 0 chr5 58850192 58850216 -93687043 + AT_rich Low_complexity Low_complexity 1 24 0 4 1033 532 261 63 29 chr5 58850336 58850541 -93686718 - B3 SINE B2 0 216 5 4 1033 224 254 17 0 chr5 58850619 58850678 -93686581 + (TATG)n Simple_repeat Simple_repeat 4 63 0 4 1033 233 204 0 0 chr5 58850624 58850668 -93686591 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1033 557 234 62 43 chr5 58850918 58851079 -93686180 - URR1A DNA MER1_type -1 225 62 4 1034 376 393 35 6 chr5 58851474 58851648 -93685611 + B4 SINE B4 38 216 -76 4 1034 21 36 0 0 chr5 58852249 58852277 -93684982 + AT_rich Low_complexity Low_complexity 1 28 0 4 1034 1886 264 21 21 chr5 58852999 58853530 -93683729 + Lx9 LINE L1 6957 7487 -157 4 1034 507 45 0 0 chr5 58853644 58853710 -93683549 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1034 279 0 0 0 chr5 58853797 58853828 -93683431 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1034 336 356 66 6 chr5 58853932 58854113 -93683146 - Lx7 LINE L1 -387 7309 7118 4 1034 242 270 53 26 chr5 58854204 58854318 -93682941 + Lx7 LINE L1 7578 7694 -2 4 1034 205 186 0 0 chr5 58855201 58855244 -93682015 + T-rich Low_complexity Low_complexity 1 43 0 4 1034 21 57 0 0 chr5 58856496 58856531 -93680728 + AT_rich Low_complexity Low_complexity 1 35 0 4 1034 765 104 7 22 chr5 58857133 58857270 -93679989 + (TCCC)n Simple_repeat Simple_repeat 3 137 0 5 1034 378 0 0 0 chr5 58857270 58857312 -93679947 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 5 1034 2002 315 70 29 chr5 58857315 58858098 -93679161 - RCHARR1 DNA MER1_type -28 946 126 5 1034 460 0 33 0 chr5 58858098 58858158 -93679101 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1034 2002 315 70 29 chr5 58858158 58858282 -93678977 - RCHARR1 DNA MER1_type -849 125 1 5 1034 543 231 60 65 chr5 58858623 58858840 -93678419 - Tigger2b DNA MER2_type -510 216 1 5 1034 198 68 43 43 chr5 58860135 58860181 -93677078 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 5 1034 5762 88 20 18 chr5 58860260 58861078 -93676181 - L1Md_F2 LINE L1 -11 6571 5753 5 1034 522 125 12 0 chr5 58861078 58861158 -93676101 + 4.5SRNA scRNA scRNA 11 91 -3 5 1034 4667 95 1 0 chr5 58861161 58861811 -93675448 - L1_Mm LINE L1 -86 5797 5147 5 1034 3370 211 22 6 chr5 58861814 58862506 -93674753 + RMER6D LTR ERVK 2 704 -16 5 1034 675 191 148 0 chr5 58862585 58862794 -93674465 - Lx9 LINE L1 -37 7607 7368 5 1034 5119 167 68 62 chr5 58862794 58863891 -93673368 - RLTR25A LTR ERVK 0 1103 1 5 1034 1144 254 35 38 chr5 58863903 58864242 -93673017 + Lx9 LINE L1 6484 6821 -823 5 1034 2962 254 39 11 chr5 58864597 58865263 -93671996 - MERVK26-int LTR ERVK 0 6919 6235 5 1034 1743 265 33 31 chr5 58865621 58866139 -93671120 - MERVK26-int LTR ERVK -616 6303 5785 5 1034 6610 177 20 30 chr5 58866148 58867959 -93669300 + Lx2 LINE L1 5211 6913 -84 5 1034 805 172 129 77 chr5 58867968 58868201 -93669058 - MERVK26-int LTR ERVK -2185 4734 4490 5 1034 4743 261 24 22 chr5 58868177 58869400 -93667859 - MERVK26-int LTR ERVK -2673 4246 3022 5 1034 992 322 123 30 chr5 58869513 58870732 -93666527 - L1M2 LINE L1 -1247 4896 3565 5 1034 246 105 0 0 chr5 58870732 58870770 -93666489 + (TAA)n Simple_repeat Simple_repeat 2 39 0 5 1034 5164 94 20 0 chr5 58870854 58871588 -93665671 - L1Md_F2 LINE L1 0 6582 5834 5 1034 2207 78 0 0 chr5 58871588 58871869 -93665390 + L1_Mm LINE L1 5380 5660 -223 5 1034 21627 80 5 24 chr5 58871865 58875584 -93661675 - L1Md_F LINE L1 -1730 4153 511 5 1034 3624 149 3 28 chr5 58875585 58876416 -93660843 - L1Md_A LINE L1 -4447 1436 631 5 1034 339 301 55 15 chr5 58876595 58876797 -93660462 + L1M2 LINE L1 3292 3501 -2642 5 1034 2204 51 20 0 chr5 58876789 58877084 -93660175 + L1_Mm LINE L1 4166 4466 -1417 5 1034 486 246 0 23 chr5 58877087 58877216 -93660043 + L1VL1 LINE L1 194 319 -6103 5 1034 9307 82 2 1 chr5 58877187 58878437 -93658822 + L1Md_F2 LINE L1 4334 5584 -299 5 1034 7152 79 31 2 chr5 58878439 58879405 -93657854 + L1Md_F2 LINE L1 5587 6580 -2 5 1034 1785 271 63 40 chr5 58880028 58880601 -93656658 + Lx5 LINE L1 6464 7049 -1 5 1034 219 226 13 27 chr5 58880603 58880700 -93656559 + A-rich Low_complexity Low_complexity 1 95 0 5 1034 349 354 86 17 chr5 58880765 58880998 -93656261 + Lx8 LINE L1 6989 7237 -236 5 1034 428 0 0 0 chr5 58880994 58881045 -93656214 - L1Md_A LINE L1 -429 6153 6103 5 1034 3147 42 0 0 chr5 58881045 58881428 -93655831 + L1Md_T LINE L1 6200 6582 0 5 1034 231 200 20 0 chr5 58882164 58882214 -93655045 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1034 25 31 0 0 chr5 58882353 58882385 -93654874 + AT_rich Low_complexity Low_complexity 1 32 0 5 1034 225 254 0 0 chr5 58882532 58882587 -93654672 + (CATA)n Simple_repeat Simple_repeat 1 55 0 5 1034 376 302 50 8 chr5 58882587 58882707 -93654552 - B4A SINE B4 -43 249 125 5 1034 1081 63 7 0 chr5 58882817 58882959 -93654300 + B1_Mus1 SINE Alu 5 147 -1 5 1034 23 0 0 0 chr5 58884284 58884307 -93652952 + AT_rich Low_complexity Low_complexity 1 23 0 5 1034 220 402 26 9 chr5 58884875 58884988 -93652271 + PB1D10 SINE Alu 3 117 0 5 1034 31 26 0 0 chr5 58885051 58885089 -93652170 + AT_rich Low_complexity Low_complexity 1 38 0 5 1034 536 324 64 34 chr5 58885111 58885408 -93651851 - Lx8 LINE L1 -29 7444 7139 5 1034 557 139 10 0 chr5 58885855 58885868 -93651391 + (TTCC)n Simple_repeat Simple_repeat 1 13 0 5 1034 1242 100 0 0 chr5 58885868 58886048 -93651211 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1034 557 139 10 0 chr5 58886048 58886135 -93651124 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 5 1034 259 243 0 0 chr5 58886802 58886872 -93650387 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1034 22 0 0 0 chr5 58887123 58887145 -93650114 + AT_rich Low_complexity Low_complexity 1 22 0 5 1034 1647 190 55 91 chr5 58887154 58887594 -93649665 - Lx4B LINE L1 -7 7051 6628 5 1034 1239 138 54 66 chr5 58887650 58887891 -93649368 - Lx4B LINE L1 -429 6629 6392 5 1034 329 306 128 51 chr5 58888024 58888554 -93648705 - L1M3 LINE L1 -1098 5045 4475 5 1034 563 267 35 26 chr5 58888561 58888866 -93648393 - L1M3 LINE L1 -2149 3994 3675 5 1034 474 33 0 0 chr5 58888866 58888926 -93648333 + (TG)n Simple_repeat Simple_repeat 2 61 0 5 1034 515 282 88 53 chr5 58888926 58889107 -93648152 - L1M3 LINE L1 -2469 3674 3492 5 1034 201 39 0 0 chr5 58889284 58889310 -93647949 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 1034 3962 46 0 0 chr5 58889360 58889834 -93647425 - L1Md_T LINE L1 0 6582 6109 5 1034 5994 33 3 4 chr5 58889832 58890959 -93646300 - L1Md_T LINE L1 -296 6286 5162 5 1034 267 54 0 0 chr5 58890961 58890998 -93646261 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1034 6788 60 21 17 chr5 58891236 58892137 -93645122 - L1Md_F2 LINE L1 -19 6563 5659 5 1034 1012 90 0 0 chr5 58892137 58892271 -93644988 - B1_Mus1 SINE Alu -14 134 1 5 1034 23 54 0 0 chr5 58892342 58892379 -93644880 + AT_rich Low_complexity Low_complexity 1 37 0 5 1034 2363 50 50 0 chr5 58893319 58893622 -93643637 + L1Md_F2 LINE L1 6250 6567 -15 5 1034 1279 124 0 15 chr5 58893674 58893871 -93643388 - B2_Mm2 SINE B2 0 195 2 5 1034 214 346 29 9 chr5 58894067 58894172 -93643087 - MIR SINE MIR -74 188 82 5 1034 474 259 64 7 chr5 58895733 58895873 -93641386 + B1_Mur3 SINE Alu 2 149 0 5 1034 192 40 0 0 chr5 58895957 58895982 -93641277 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1034 260 315 225 32 chr5 58896001 58896250 -93641009 + MER67A LTR ERV1 247 543 0 5 1034 21 0 0 0 chr5 58896477 58896498 -93640761 + AT_rich Low_complexity Low_complexity 1 21 0 5 1034 471 18 0 0 chr5 58896644 58896700 -93640559 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 1034 1211 78 0 0 chr5 58897260 58897427 -93639832 - L1Md_F2 LINE L1 -10 6572 6406 5 1034 1868 172 87 32 chr5 58897573 58897952 -93639307 - Lx4A LINE L1 -3 7055 6656 5 1034 584 300 103 67 chr5 58898019 58898500 -93638759 + L1_Mur3 LINE L1 3112 3648 -2232 5 1034 396 0 0 0 chr5 58898500 58898544 -93638715 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1034 584 300 103 67 chr5 58898544 58899160 -93638099 + L1_Mur3 LINE L1 3649 4248 -1632 5 1034 1463 28 0 6 chr5 58899242 58899423 -93637836 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1034 25086 155 20 29 chr5 58899479 58904309 -93632950 + L1_Mus3 LINE L1 406 5208 -675 5 1034 180 0 0 0 chr5 58904309 58904329 -93632930 + (CAATT)n Simple_repeat Simple_repeat 2 21 0 5 1034 25086 154 10 30 chr5 58904329 58904725 -93632534 + L1_Mus3 LINE L1 5209 5593 -290 5 1034 884 133 7 0 chr5 58904725 58904860 -93632399 + B1_Mus1 SINE Alu 1 136 -12 5 1034 378 0 0 0 chr5 58904860 58904902 -93632357 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 5 1034 663 25 0 0 chr5 58904903 58904984 -93632275 + (GAAA)n Simple_repeat Simple_repeat 3 83 0 5 1034 25086 116 10 6 chr5 58904984 58906016 -93631243 + L1_Mus3 LINE L1 5591 6626 -12 5 1034 555 317 85 25 chr5 58906149 58906397 -93630862 + L1M2 LINE L1 4727 4982 -1161 5 1034 477 0 0 0 chr5 58906397 58906450 -93630809 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1034 555 317 85 25 chr5 58906450 58906716 -93630543 + L1M2 LINE L1 4983 5272 -871 5 1034 23 33 0 0 chr5 58906716 58906746 -93630513 + AT_rich Low_complexity Low_complexity 1 30 0 5 1034 281 182 40 0 chr5 58906805 58906904 -93630355 + (TA)n Simple_repeat Simple_repeat 1 103 0 5 1034 309 344 19 0 chr5 58906905 58907065 -93630194 + L1M2 LINE L1 5375 5537 -760 5 1034 210 333 14 0 chr5 58907259 58907331 -93629928 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1034 5791 18 1 0 chr5 58907548 58908226 -93629033 + L1Md_A LINE L1 231 909 -5815 5 1034 28729 3 0 0 chr5 58908220 58911464 -93625795 + L1Md_A LINE L1 2343 5586 -297 5 1034 9011 3 0 0 chr5 58911464 58912460 -93624799 + L1Md_A LINE L1 5587 6582 0 5 1034 1079 101 0 13 chr5 58912495 58912645 -93624614 + B1_Mus1 SINE Alu 1 148 0 5 1034 180 0 0 0 chr5 58912645 58912665 -93624594 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1034 229 146 15 61 chr5 58913920 58914006 -93623253 + A-rich Low_complexity Low_complexity 1 82 0 5 1034 541 224 75 46 chr5 58914225 58914398 -93622861 + B3A SINE B2 5 182 -16 5 1034 303 49 0 0 chr5 58914462 58914503 -93622756 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1034 1267 154 0 33 chr5 58914668 58914909 -93622350 + Lx3A LINE L1 6747 6979 -2 5 1034 280 89 17 35 chr5 58914909 58914967 -93622292 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 5 1034 325 305 7 30 chr5 58915082 58915217 -93622042 + GA-rich Low_complexity Low_complexity 2 133 0 5 1034 238 359 75 38 chr5 58915257 58915497 -93621762 - Lx9 LINE L1 -267 7377 7129 5 1034 568 292 49 40 chr5 58915642 58915867 -93621392 - MER58B DNA MER1_type -14 327 101 5 1034 253 339 14 84 chr5 58915953 58916095 -93621164 + Lx8 LINE L1 7194 7325 -148 5 1034 418 98 0 24 chr5 58916099 58916183 -93621076 + (CAAAA)n Simple_repeat Simple_repeat 1 82 0 5 1034 207 353 30 71 chr5 58916319 58916487 -93620772 + L2c LINE L2 3148 3308 -79 5 1034 198 0 0 0 chr5 58917991 58918013 -93619246 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1034 351 0 0 0 chr5 58918013 58918051 -93619208 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1034 823 287 214 10 chr5 58918847 58919150 -93618109 + ORR1D1 LTR MaLR 9 373 -1 5 1034 243 368 9 17 chr5 58919252 58919368 -93617891 - MLT1C LTR MaLR -5 462 348 5 1034 554 160 7 0 chr5 58919698 58919848 -93617411 + (TA)n Simple_repeat Simple_repeat 2 152 0 5 1034 263 333 107 33 chr5 58919865 58919986 -93617273 - ID_B1 SINE B4 -7 217 88 5 1034 489 58 0 0 chr5 58920291 58920360 -93616899 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1034 1320 108 0 5 chr5 58921665 58921852 -93615407 - B2_Mm2 SINE B2 -9 186 1 5 1034 605 310 35 0 chr5 58921905 58922108 -93615151 - B3 SINE B2 -6 210 1 6 1034 343 299 140 0 chr5 58922516 58922623 -93614636 + ID_B1 SINE B4 93 214 -10 6 1034 375 252 57 38 chr5 58923790 58923947 -93613312 + RLTR23 LTR ERV1 265 424 -6 6 1034 755 350 79 48 chr5 58924730 58925875 -93611384 + RLTR4_MM-int LTR ERV1 1957 3136 -4465 6 1034 4295 144 3 1 chr5 58925947 58926643 -93610616 + L1Md_F2 LINE L1 4891 5587 -296 6 1034 7699 65 3 5 chr5 58926644 58927638 -93609621 + L1Md_F2 LINE L1 5589 6580 -2 6 1034 3765 191 54 4 chr5 58927665 58928449 -93608810 + Lx LINE L1 5827 6649 -5 6 1034 888 282 71 91 chr5 58928481 58928945 -93608314 - RMER13A LTR ERVK -394 466 12 6 1034 535 336 79 65 chr5 58929008 58929504 -93607755 + RLTR4_MM-int LTR ERV1 3874 4391 -3215 6 1034 601 278 7 3 chr5 58929890 58930100 -93607159 + MMERGLN-int LTR ERV1 4771 4942 -2614 6 1034 944 138 11 0 chr5 58931040 58931214 -93606045 - Lx2 LINE L1 0 6997 6822 6 1034 946 79 0 0 chr5 58931257 58931383 -93605876 + B1_Mus1 SINE Alu 23 148 0 6 1034 1527 255 111 0 chr5 58931528 58931896 -93605363 - MTC LTR MaLR 0 421 13 6 1034 3267 61 4 17 chr5 58932278 58932790 -93604469 - L1Md_F2 LINE L1 -573 6011 5505 6 1034 4383 52 0 0 chr5 58932790 58933325 -93603934 + L1Md_F2 LINE L1 6031 6565 -17 6 1034 684 0 0 0 chr5 58933332 58933408 -93603851 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 6 1034 1524 272 60 10 chr5 58933532 58934034 -93603225 - RLTR11A2 LTR ERVK 0 527 1 6 1034 3262 247 63 31 chr5 58934035 58935105 -93602154 - MYSERV-int LTR ERVK -2 6548 5445 6 1034 619 259 38 69 chr5 58935265 58935560 -93601699 + MurERV4_19-int LTR ERVK 5210 5429 -351 6 1034 355 302 49 32 chr5 58935560 58935683 -93601576 + MTD LTR MaLR 280 404 -15 6 1034 36 0 0 0 chr5 58935733 58935769 -93601490 + AT_rich Low_complexity Low_complexity 1 36 0 6 1034 210 183 67 53 chr5 58937349 58937424 -93599835 + MIRc SINE MIR 85 160 -108 6 1034 286 311 98 76 chr5 58938061 58938325 -93598934 - L1M2 LINE L1 -968 5175 4906 6 1034 5844 224 70 12 chr5 58938366 58939321 -93597938 - Lx5 LINE L1 0 7050 6030 6 1034 591 15 0 0 chr5 58939321 58939389 -93597870 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1034 5844 202 36 5 chr5 58939389 58940337 -93596922 - Lx5 LINE L1 -1021 6029 5052 6 1034 3965 197 6 45 chr5 58940338 58941315 -93595944 - Lx5 LINE L1 -1893 3984 3046 6 1034 2430 158 31 47 chr5 58941394 58941879 -93595380 - Lx LINE L1 -1 6653 6177 6 1034 1965 78 7 0 chr5 58941870 58942139 -93595120 + L1_Mus1 LINE L1 6280 6550 -17 6 1034 5210 48 0 23 chr5 58942135 58942799 -93594460 + L1Md_F2 LINE L1 5933 6581 -1 6 1034 207 0 0 0 chr5 58942824 58942847 -93594412 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1034 1042 72 0 7 chr5 58942859 58942999 -93594260 + B1_Mm SINE Alu 9 147 0 6 1034 4995 161 39 4 chr5 58943025 58944323 -93592936 - Lx LINE L1 -475 6179 4851 6 1034 8646 176 35 6 chr5 58944317 58944629 -93592630 + L1_Mur2 LINE L1 2820 3130 -2747 6 1034 278 26 0 25 chr5 58944629 58944669 -93592590 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1034 8646 176 35 6 chr5 58944669 58946103 -93591156 + L1_Mur2 LINE L1 3131 4615 -1262 6 1034 3833 93 13 2 chr5 58946541 58947080 -93590179 + L1_Mus3 LINE L1 6092 6636 -2 6 1034 339 130 0 0 chr5 58947711 58947765 -93589494 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1034 1709 216 43 34 chr5 58947908 58948325 -93588934 + MTC LTR MaLR 1 421 0 6 1034 22 0 0 0 chr5 58948617 58948639 -93588620 + AT_rich Low_complexity Low_complexity 1 22 0 6 1034 1196 306 64 34 chr5 58948699 58948777 -93588482 - MTE-int LTR MaLR -400 1180 1104 6 1034 1357 111 66 9 chr5 58948777 58949004 -93588255 - L1Md_F2 LINE L1 0 6582 6343 6 1034 1196 306 64 34 chr5 58949004 58949392 -93587867 - MTE-int LTR MaLR -477 1103 700 6 1034 1278 241 25 38 chr5 58949410 58949729 -93587530 + Lx5 LINE L1 6638 6952 -98 6 1034 440 311 15 7 chr5 58949776 58949912 -93587347 - MTE-int LTR MaLR -886 694 558 6 1034 1197 53 0 0 chr5 58949912 58950063 -93587196 - L1_Mus1 LINE L1 -540 6027 5877 6 1034 4211 71 4 0 chr5 58950063 58950610 -93586649 + L1_Mus1 LINE L1 6018 6566 -1 6 1034 1169 304 44 22 chr5 58950656 58951126 -93586133 - MTE-int LTR MaLR -1087 493 5 6 1034 995 310 58 11 chr5 58951131 58951493 -93585766 - MTEa LTR MaLR 0 379 1 6 1034 1053 258 19 69 chr5 58954453 58954792 -93582467 - RLTR11A LTR ERVK -5 523 200 6 1034 321 341 11 33 chr5 58954790 58954881 -93582378 - B1_Mur3 SINE Alu -38 111 23 6 1034 24 77 0 0 chr5 58954886 58954938 -93582321 + AT_rich Low_complexity Low_complexity 1 52 0 6 1034 557 102 37 0 chr5 58954966 58955074 -93582185 + (TA)n Simple_repeat Simple_repeat 1 112 0 6 1034 7853 62 1 14 chr5 58955102 58956107 -93581152 - L1Md_F2 LINE L1 -4 6578 5587 6 1034 59 15 0 0 chr5 58956156 58956222 -93581037 + AT_rich Low_complexity Low_complexity 1 66 0 6 1034 26 74 0 0 chr5 58956273 58956327 -93580932 + AT_rich Low_complexity Low_complexity 1 54 0 6 1034 3998 98 33 10 chr5 58956329 58956909 -93580350 - L1Md_F2 LINE L1 -10 6572 5980 6 1034 1303 76 5 21 chr5 58956909 58957098 -93580161 + B2_Mm2 SINE B2 1 186 -9 6 1034 819 221 83 0 chr5 58957176 58957393 -93579866 + Lx9 LINE L1 7319 7553 -91 6 1034 330 198 39 10 chr5 58957708 58957810 -93579449 + A-rich Low_complexity Low_complexity 2 106 0 6 1034 861 320 135 4 chr5 58957840 58958313 -93578946 - Lx7 LINE L1 -419 7277 6743 6 1034 2155 204 170 10 chr5 58958317 58958906 -93578353 - RMER6C LTR ERVK -4 686 4 6 1034 1021 80 0 7 chr5 58959822 58959960 -93577299 + B1_Mm SINE Alu 3 139 -8 6 1034 237 65 0 0 chr5 58959960 58959991 -93577268 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1034 432 0 0 0 chr5 58959991 58960039 -93577220 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1034 23 33 0 0 chr5 58960683 58960713 -93576546 + AT_rich Low_complexity Low_complexity 1 30 0 6 1034 241 341 54 11 chr5 58961014 58961106 -93576153 + RSINE1 SINE B4 19 114 -51 6 1034 57 61 0 0 chr5 58961367 58961466 -93575793 + AT_rich Low_complexity Low_complexity 1 99 0 6 1034 40 67 0 0 chr5 58961657 58961732 -93575527 + AT_rich Low_complexity Low_complexity 1 75 0 6 1034 2721 26 0 229 chr5 58961811 58962314 -93574945 + RLTR10 LTR ERVK 1 388 -2 6 1034 8082 37 1 2 chr5 58962326 58963285 -93573974 + RLTR10-int LTR ERVK 41 998 -989 6 1034 8522 33 0 2 chr5 58963561 58964560 -93572699 + RLTR10-int LTR ERVK 990 1986 -1 6 1034 2661 23 0 254 chr5 58964560 58965083 -93572176 + RLTR10 LTR ERVK 1 390 0 6 1034 183 42 0 0 chr5 58965723 58965747 -93571512 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1034 210 71 0 0 chr5 58965883 58965911 -93571348 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1034 414 157 12 0 chr5 58965911 58965994 -93571265 - Lx3C LINE L1 0 6976 6893 6 1034 22 0 0 0 chr5 58967621 58967643 -93569616 + AT_rich Low_complexity Low_complexity 1 22 0 6 1034 1329 127 92 4 chr5 58967644 58967882 -93569377 - L1_Mus1 LINE L1 -22 6545 6287 6 1034 6008 85 8 1 chr5 58967863 58968722 -93568537 - L1_Mm LINE L1 -3572 2311 1447 6 1034 530 231 152 34 chr5 58968779 58969016 -93568243 + RLTR10A LTR ERVK 147 411 0 6 1034 370 222 61 53 chr5 58969033 58969147 -93568112 + RLTR10-int LTR ERVK 319 433 -1554 6 1034 380 350 40 31 chr5 58969369 58969690 -93567569 + MMERVK10C-int LTR ERVK 203 526 -6016 6 1034 4442 315 32 38 chr5 58970039 58972636 -93564623 + MMERVK10C-int LTR ERVK 1233 3813 -3768 6 1034 2132 298 56 46 chr5 58972629 58974817 -93562442 + IAP-d-int LTR ERVK 992 5080 -1462 6 1034 543 248 140 21 chr5 58974856 58975099 -93562160 + RLTR10A LTR ERVK 140 411 0 6 1034 6512 120 28 2 chr5 58975099 58976333 -93560926 - L1Md_F LINE L1 -4431 1452 160 6 1034 360 43 0 0 chr5 58976872 58976918 -93560341 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1034 578 331 13 0 chr5 58976921 58977075 -93560184 - B3A SINE B2 -38 160 5 6 1034 270 384 92 46 chr5 58977166 58977513 -93559746 - MLT1A0 LTR MaLR 0 365 3 6 1034 23 0 0 0 chr5 58977518 58977541 -93559718 + AT_rich Low_complexity Low_complexity 1 23 0 6 1034 767 300 131 30 chr5 58977843 58978011 -93559248 + MTEa LTR MaLR 9 206 -173 6 1034 486 0 0 0 chr5 58978011 58978065 -93559194 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1034 767 300 131 30 chr5 58978065 58978233 -93559026 + MTEa LTR MaLR 207 378 -1 6 1034 8122 71 2 3 chr5 58978599 58980135 -93557124 - L1Md_F2 LINE L1 -1 6581 5075 6 1034 301 355 82 11 chr5 58980672 58980854 -93556405 - L1MCb LINE L1 -5036 1009 815 6 129 35165 70 15 6 chr5 58980871 58987212 -93550047 - L1Md_F2 LINE L1 0 6582 301 6 1035 25 0 0 0 chr5 58989627 58989652 -93547607 + AT_rich Low_complexity Low_complexity 1 25 0 6 1035 4575 269 102 12 chr5 58989671 58990583 -93546676 - Lx7 LINE L1 -492 7204 6185 6 1035 417 20 0 0 chr5 58990583 58990633 -93546626 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1035 8227 232 78 27 chr5 58990633 58991539 -93545720 - Lx7 LINE L1 -1512 6184 5244 6 1035 747 22 0 0 chr5 58991539 58991628 -93545631 + (CA)n Simple_repeat Simple_repeat 2 90 0 6 1035 8227 216 67 34 chr5 58991628 58993210 -93544049 - Lx7 LINE L1 -637 5243 3591 6 1035 623 255 7 58 chr5 58993211 58993365 -93543894 + B1_Mus1 SINE Alu 1 147 -1 6 1035 474 327 57 103 chr5 58993871 58994260 -93542999 + L1MCa LINE L1 105 475 -6033 6 1035 183 42 0 0 chr5 58994288 58994312 -93542947 + (CAATA)n Simple_repeat Simple_repeat 5 28 0 6 1035 343 267 119 74 chr5 58994815 58995017 -93542242 + L1MCa LINE L1 1031 1241 -5267 6 1035 256 386 53 26 chr5 58995108 58995297 -93541962 + B3 SINE B2 23 216 0 6 1035 1183 278 60 33 chr5 58995454 58995818 -93541441 + ORR1D1 LTR MaLR 1 374 0 6 1035 1176 124 0 36 chr5 58995984 58996176 -93541083 + B2_Mm2 SINE B2 2 186 -9 6 1035 5951 173 17 1 chr5 58996319 58997419 -93539840 - L1_Mm LINE L1 -132 5751 4634 6 1035 264 91 0 0 chr5 58997422 58997466 -93539793 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1035 4285 186 26 24 chr5 58997503 58998398 -93538861 + Lx LINE L1 5745 6641 -13 6 1035 2134 72 3 11 chr5 58998399 58998682 -93538577 + L1_Mus1 LINE L1 6286 6566 -1 6 1035 35 24 0 0 chr5 58998682 58998724 -93538535 + AT_rich Low_complexity Low_complexity 1 42 0 6 1035 896 197 5 75 chr5 58998946 58999160 -93538099 - Lx2B LINE L1 -537 6463 6265 6 1035 3072 133 44 15 chr5 58999160 58999687 -93537572 + Lx2B LINE L1 6459 7000 0 6 1035 396 302 66 47 chr5 58999712 58999924 -93537335 + B3 SINE B2 1 216 0 6 1035 1074 234 17 8 chr5 59000542 59000779 -93536480 + Lx4A LINE L1 6818 7056 -2 1 1035 955 130 7 0 chr5 59000842 59000988 -93536271 + B1_Mus2 SINE Alu 1 147 0 2 1035 243 0 0 0 chr5 59000996 59001023 -93536236 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1035 24 53 0 0 chr5 59001906 59001944 -93535315 + AT_rich Low_complexity Low_complexity 1 38 0 4 1035 578 322 106 57 chr5 59003098 59003730 -93533529 + Lx8 LINE L1 6763 7440 -33 5 1035 21 0 0 0 chr5 59003906 59003927 -93533332 + AT_rich Low_complexity Low_complexity 1 21 0 6 1035 2604 71 12 82 chr5 59003927 59004341 -93532918 - L1_Mus2 LINE L1 -4 6562 6178 7 1035 228 143 0 87 chr5 59004346 59004392 -93532867 + Lx LINE L1 6156 6197 -457 8 1035 769 55 9 0 chr5 59004546 59004657 -93532602 + B1_Mus2 SINE Alu 1 120 0 9 1035 29 0 0 0 chr5 59005021 59005050 -93532209 + AT_rich Low_complexity Low_complexity 1 29 0 1 1035 461 306 20 103 chr5 59005063 59005267 -93531992 - Lx5 LINE L1 -42 7008 6822 1 1035 363 96 0 0 chr5 59006097 59006149 -93531110 + (GA)n Simple_repeat Simple_repeat 2 53 0 1 1035 878 196 90 97 chr5 59006299 59006434 -93530825 + Lx9 LINE L1 7320 7462 -182 1 1035 372 77 0 0 chr5 59006434 59006486 -93530773 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1035 234 0 0 0 chr5 59006486 59006512 -93530747 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1035 878 196 90 97 chr5 59006512 59006685 -93530574 + Lx9 LINE L1 7463 7626 -18 1 1035 626 0 14 0 chr5 59006690 59006764 -93530495 + (GAAAA)n Simple_repeat Simple_repeat 2 76 0 1 1035 23 33 0 0 chr5 59008236 59008266 -93528993 + AT_rich Low_complexity Low_complexity 1 30 0 1 1035 2858 83 84 19 chr5 59010303 59010731 -93526528 - L1_Mus2 LINE L1 0 6566 6111 1 1035 465 19 0 0 chr5 59011093 59011147 -93526112 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1035 774 346 47 55 chr5 59011147 59011508 -93525751 - MTEa LTR MaLR -19 360 3 2 1035 23 0 0 0 chr5 59012046 59012069 -93525190 + AT_rich Low_complexity Low_complexity 1 23 0 2 1035 450 36 0 0 chr5 59012172 59012228 -93525031 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1035 237 65 0 0 chr5 59012617 59012648 -93524611 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1035 463 321 86 11 chr5 59013391 59013659 -93523600 + MLT1A0 LTR MaLR 75 362 -3 2 1035 916 186 38 5 chr5 59013834 59014018 -93523241 - Lx5 LINE L1 -714 6336 6147 2 1035 452 176 24 0 chr5 59014013 59014098 -93523161 + Lx5 LINE L1 6326 6412 -638 2 1035 437 301 39 65 chr5 59014361 59014592 -93522667 + RLTR23 LTR ERV1 206 430 0 2 1035 3246 219 23 14 chr5 59014593 59015241 -93522018 + Lx5 LINE L1 6394 7047 -3 2 1035 193 70 0 65 chr5 59015424 59015470 -93521789 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1035 285 314 12 1 chr5 59015876 59015966 -93521293 + MLT1B LTR MaLR 286 378 -12 2 1035 282 29 0 0 chr5 59016803 59016838 -93520421 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1035 1667 199 32 11 chr5 59016868 59017244 -93520015 - Lx2B LINE L1 -790 6210 5827 3 1035 3171 195 111 6 chr5 59017225 59017921 -93519338 + Lx2B LINE L1 6225 6993 -7 3 1035 1191 167 135 40 chr5 59018240 59018565 -93518694 - Lx2B LINE L1 0 7000 6645 3 1035 22 0 0 0 chr5 59019205 59019227 -93518032 + AT_rich Low_complexity Low_complexity 1 22 0 3 1035 531 274 8 16 chr5 59019393 59019519 -93517740 + B1_Mur4 SINE Alu 25 149 -1 3 1035 481 268 39 8 chr5 59020092 59020220 -93517039 - B3 SINE B2 -5 211 80 3 1035 685 181 0 0 chr5 59020220 59020336 -93516923 - Lx3C LINE L1 -493 6483 6368 3 1035 204 125 0 0 chr5 59020415 59020447 -93516812 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1035 1529 68 36 13 chr5 59020470 59020694 -93516565 + L1_Mus2 LINE L1 6337 6565 -1 3 1035 396 330 128 5 chr5 59020810 59021014 -93516245 - Lx8 LINE L1 -275 7198 6970 3 1035 227 280 63 40 chr5 59021334 59021509 -93515750 - L1M2 LINE L1 -418 5882 5704 3 1035 386 325 58 0 chr5 59021525 59021679 -93515580 - L1M2 LINE L1 -866 5277 5115 3 1035 21 0 0 0 chr5 59021679 59021700 -93515559 + AT_rich Low_complexity Low_complexity 1 21 0 4 1035 247 171 85 73 chr5 59022558 59022640 -93514619 + MER20 DNA MER1_type 25 107 -112 4 1035 656 168 176 5 chr5 59022939 59023149 -93514110 + Lx9 LINE L1 7396 7641 -3 4 1035 7830 189 18 1 chr5 59023274 59023552 -93513707 + Lx2A LINE L1 4384 4662 -1221 4 1035 345 62 0 0 chr5 59023552 59023600 -93513659 + (CAA)n Simple_repeat Simple_repeat 1 48 0 4 1035 7830 158 23 2 chr5 59023600 59025684 -93511575 + Lx2A LINE L1 4663 6800 -208 4 1035 2884 71 46 54 chr5 59025684 59026162 -93511097 + IAPLTR2_Mm LTR ERVK 1 474 -1 4 1035 11196 80 48 38 chr5 59026165 59027929 -93509330 + IAPEz-int LTR ERVK 3 1700 -4781 4 1035 6217 63 14 17 chr5 59027922 59028749 -93508510 + IAPEz-int LTR ERVK 5651 6475 -6 4 1035 2707 36 135 3 chr5 59028755 59029118 -93508141 + IAPLTR2a LTR ERVK 1 411 0 4 1035 987 156 37 19 chr5 59029118 59029326 -93507933 + Lx2A1 LINE L1 6794 7005 -3 4 1035 213 65 0 0 chr5 59029449 59029480 -93507779 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1035 27 0 0 0 chr5 59029970 59029997 -93507262 + AT_rich Low_complexity Low_complexity 1 27 0 4 1035 2833 222 56 29 chr5 59031484 59032165 -93505094 - Lx2B LINE L1 -5 6995 6297 5 1035 27 0 0 0 chr5 59033243 59033270 -93503989 + AT_rich Low_complexity Low_complexity 1 27 0 5 1035 319 356 39 8 chr5 59033991 59034121 -93503138 + B4A SINE B4 9 142 -150 5 1035 292 253 13 0 chr5 59034218 59034293 -93502966 + (CATA)n Simple_repeat Simple_repeat 1 76 0 5 1035 308 311 98 12 chr5 59034730 59034893 -93502366 - MLT1D LTR MaLR -1 504 328 5 1035 307 275 107 39 chr5 59035159 59035337 -93501922 - L1MEe LINE L1 -3973 881 692 5 1035 255 353 80 53 chr5 59035641 59036129 -93501130 - Lx8 LINE L1 -17 7456 6956 5 1035 306 0 0 0 chr5 59036234 59036268 -93500991 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1035 273 135 0 0 chr5 59037727 59037779 -93499480 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 5 1035 288 271 59 0 chr5 59037793 59037878 -93499381 + B1_Mus1 SINE Alu 14 103 -45 5 1035 221 333 0 24 chr5 59038002 59038128 -93499131 + T-rich Low_complexity Low_complexity 3 125 0 6 1035 2775 65 2 74 chr5 59038221 59038639 -93498620 - RLTR10 LTR ERVK -2 388 1 6 1035 8412 38 2 2 chr5 59038639 59039636 -93497623 - RLTR10-int LTR ERVK -1 1986 990 6 1035 4238 55 24 0 chr5 59040166 59041061 -93496198 - RLTR10-int LTR ERVK -995 992 1 6 1035 2850 73 10 5 chr5 59041063 59041449 -93495810 - RLTR10 LTR ERVK -2 388 1 6 1035 4165 112 13 2 chr5 59041540 59042172 -93495087 + L1_Mus4 LINE L1 5997 6635 -1 6 1035 1139 112 6 0 chr5 59042369 59042548 -93494711 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1035 234 0 0 0 chr5 59042548 59042574 -93494685 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 1035 993 109 0 21 chr5 59042574 59042715 -93494544 - B1_Mus2 SINE Alu -9 138 1 6 1035 204 184 0 0 chr5 59043105 59043154 -93494105 + CT-rich Low_complexity Low_complexity 2 50 0 6 1035 258 32 0 0 chr5 59043155 59043186 -93494073 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1035 238 237 40 0 chr5 59043186 59043262 -93493997 + (CATA)n Simple_repeat Simple_repeat 1 79 0 6 1035 351 311 22 0 chr5 59044193 59044283 -93492976 + B3 SINE B2 2 93 -123 6 1035 2091 74 17 10 chr5 59044296 59044596 -93492663 - RLTR13C2 LTR ERVK 0 808 507 7 1035 17285 63 4 8 chr5 59044596 59046885 -93490374 + L1Md_F3 LINE L1 3307 5585 -298 7 1035 8006 47 2 0 chr5 59046886 59047865 -93489394 + L1Md_F3 LINE L1 5587 6567 -17 7 1035 3928 64 3 16 chr5 59047865 59048430 -93488829 - RLTR13C2 LTR ERVK -192 841 1 7 1035 208 147 0 0 chr5 59048504 59048538 -93488721 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 7 1035 264 333 13 0 chr5 59050104 59050179 -93487080 - L3 LINE CR1 -119 4370 4295 7 1035 923 228 13 19 chr5 59050378 59050624 -93486635 + RMER19B LTR ERVK 684 902 0 7 1035 191 217 0 16 chr5 59050656 59050717 -93486542 + GA-rich Low_complexity Low_complexity 1 60 0 7 1035 2931 124 84 16 chr5 59052482 59052980 -93484279 + Lx3_Mus LINE L1 6478 7009 0 7 1035 24 0 0 0 chr5 59054366 59054390 -93482869 + AT_rich Low_complexity Low_complexity 1 24 0 7 1035 443 309 62 50 chr5 59054533 59054693 -93482566 + RSINE1 SINE B4 3 164 -1 7 1035 496 377 45 26 chr5 59055093 59055360 -93481899 - B4A SINE B4 -18 274 3 8 1035 430 244 32 0 chr5 59055390 59055513 -93481746 - Lx9 LINE L1 -638 7006 6880 8 1035 8356 135 12 8 chr5 59055555 59056975 -93480284 - Lx3A LINE L1 -11 6970 5554 8 1035 2679 108 2 48 chr5 59056973 59057217 -93480042 + L1_Mur1 LINE L1 4430 4666 -1220 8 1035 5894 79 4 1 chr5 59057217 59058005 -93479254 - L1_Mus2 LINE L1 0 6566 5777 8 1035 2679 108 2 48 chr5 59058005 59058218 -93479041 + L1_Mur1 LINE L1 4667 4866 -1020 8 1035 557 323 26 0 chr5 59058256 59058451 -93478808 - Lx9 LINE L1 -805 6839 6640 8 1035 781 314 37 35 chr5 59058472 59059042 -93478217 + Lx9 LINE L1 7066 7636 -8 8 1035 468 0 0 0 chr5 59059170 59059222 -93478037 + (TTTTA)n Simple_repeat Simple_repeat 2 53 0 8 1035 612 73 0 0 chr5 59059577 59059659 -93477600 + (TA)n Simple_repeat Simple_repeat 2 83 0 8 1035 294 231 115 0 chr5 59059659 59059789 -93477470 + Lx9 LINE L1 7492 7636 -8 8 1035 429 329 41 29 chr5 59059902 59060146 -93477113 + MLT1B LTR MaLR 1 247 -143 8 1035 230 294 0 0 chr5 59060331 59060416 -93476843 + T-rich Low_complexity Low_complexity 1 85 0 9 1035 592 186 121 6 chr5 59060452 59060625 -93476634 + Lx9 LINE L1 7445 7637 -7 9 1035 637 283 0 0 chr5 59061235 59061401 -93475858 - L1_Mur3 LINE L1 -2007 3873 3708 9 1035 709 226 33 11 chr5 59061471 59061549 -93475710 + Lx9 LINE L1 7237 7317 -327 9 1035 420 20 0 0 chr5 59061549 59061598 -93475661 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 9 1035 709 226 33 11 chr5 59061598 59061702 -93475557 + Lx9 LINE L1 7318 7422 -222 9 1035 548 194 65 0 chr5 59061713 59061883 -93475376 + Lx9 LINE L1 7463 7643 -1 9 1035 1673 349 67 30 chr5 59061896 59062917 -93474342 + Lx8 LINE L1 6263 7320 -153 9 1035 201 162 0 0 chr5 59063052 59063089 -93474170 + A-rich Low_complexity Low_complexity 1 37 0 9 1035 1722 192 13 82 chr5 59063672 59064052 -93473207 - ORR1B1 LTR MaLR 0 394 41 9 1035 26 30 0 0 chr5 59064454 59064487 -93472772 + AT_rich Low_complexity Low_complexity 1 33 0 9 1035 374 326 68 0 chr5 59065511 59065643 -93471616 - B1F SINE Alu -6 143 3 9 1035 414 53 0 0 chr5 59065645 59065702 -93471557 + (TTTTG)n Simple_repeat Simple_repeat 3 59 0 1 1035 390 42 0 0 chr5 59065827 59065875 -93471384 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1035 626 188 22 3 chr5 59066717 59066869 -93470390 + RMER6D LTR ERVK 156 312 -378 1 1035 231 218 0 0 chr5 59067281 59067336 -93469923 + T-rich Low_complexity Low_complexity 1 55 0 1 1035 1372 71 0 0 chr5 59067343 59067527 -93469732 - L1_Mus2 LINE L1 0 6566 6383 1 1035 429 20 0 0 chr5 59067527 59067577 -93469682 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1035 244 271 24 67 chr5 59067581 59067713 -93469546 - L1_Rod LINE L1 -3894 2249 2123 1 1035 450 0 0 0 chr5 59067856 59067906 -93469353 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1035 953 172 64 170 chr5 59067922 59068139 -93469120 + RMER6D LTR ERVK 196 413 -307 1 1035 1001 84 0 13 chr5 59068139 59068296 -93468963 + L1_Mus4 LINE L1 6482 6636 0 1 1035 953 172 64 170 chr5 59068296 59068407 -93468852 + RMER6D LTR ERVK 414 489 -231 1 1035 2684 282 96 37 chr5 59068523 59070072 -93467187 + RMER1A Other Other 16 1024 -6 1 1035 464 63 32 0 chr5 59070110 59070173 -93467086 + B1_Mm SINE Alu 75 139 -8 1 1035 562 47 11 11 chr5 59070173 59070260 -93466999 + (CAAAA)n Simple_repeat Simple_repeat 2 88 0 1 1035 538 325 106 73 chr5 59070352 59070681 -93466578 + ORR1D2-int LTR MaLR 586 925 -445 1 1035 723 332 34 52 chr5 59070673 59070997 -93466262 + ORR1D2 LTR MaLR 17 334 -36 1 1035 23 33 0 0 chr5 59071216 59071246 -93466013 + AT_rich Low_complexity Low_complexity 1 30 0 1 1035 6819 154 48 43 chr5 59071246 59072552 -93464707 - Lx3C LINE L1 -1 6975 5678 1 1035 3144 106 8 19 chr5 59072676 59073148 -93464111 + L1_Mus3 LINE L1 6172 6638 0 1 1035 1181 282 13 37 chr5 59073314 59073693 -93463566 - Lx6 LINE L1 -9 7451 7082 1 1035 10082 163 50 35 chr5 59073693 59075728 -93461531 + MYSERV6-int LTR ERVK 568 2632 -6327 1 1035 198 0 0 0 chr5 59075728 59075750 -93461509 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1035 1130 88 0 0 chr5 59075750 59075897 -93461362 - B1_Mm SINE Alu 0 147 1 1 1035 2652 135 0 16 chr5 59076015 59076458 -93460801 + MYSERV6-int LTR ERVK 3129 3564 -5395 1 1035 333 0 0 0 chr5 59076458 59076495 -93460764 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1035 207 0 0 0 chr5 59076495 59076518 -93460741 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1035 6122 99 3 14 chr5 59076586 59077466 -93459793 - L1Md_F2 LINE L1 0 6582 5712 1 1035 787 50 0 0 chr5 59077462 59077562 -93459697 + L1_Mm LINE L1 4690 4789 -1094 1 1035 5204 166 75 5 chr5 59077562 59078662 -93458597 + MYSERV6-int LTR ERVK 3565 4958 -4001 1 1035 22 35 0 0 chr5 59078674 59078703 -93458556 + AT_rich Low_complexity Low_complexity 1 29 0 1 1035 243 303 103 61 chr5 59078716 59078881 -93458378 + MT2B LTR ERVL 128 299 -302 1 1035 8031 168 34 20 chr5 59078881 59080494 -93456765 + MYSERV6-int LTR ERVK 6325 7959 -1000 1 1035 684 160 4 4 chr5 59080489 59080633 -93456626 + MYSERV6-int LTR ERVK 8074 8191 -768 1 1035 245 208 57 0 chr5 59080640 59080693 -93456566 + GA-rich Low_complexity Low_complexity 3 58 0 1 1035 661 219 14 7 chr5 59080707 59080845 -93456414 + RMER6B LTR ERVK 322 460 -1 1 1035 1135 269 200 41 chr5 59080855 59081296 -93455963 - Lx6 LINE L1 -412 7048 6327 1 1035 3285 126 4 10 chr5 59081296 59081803 -93455456 + Lx LINE L1 6151 6654 0 1 1035 1135 291 61 69 chr5 59081803 59082166 -93455093 - Lx6 LINE L1 -724 6326 5962 1 1035 2729 201 71 11 chr5 59082167 59082895 -93454364 + Lx5 LINE L1 5174 5944 -1106 1 1035 940 256 94 8 chr5 59082915 59083159 -93454100 - ORR1B2 LTR MaLR -102 265 1 1 1035 359 164 0 0 chr5 59083794 59083855 -93453404 - ORR1B2 LTR MaLR -306 61 1 1 1035 325 348 7 41 chr5 59083864 59084011 -93453248 - Lx8 LINE L1 -783 6690 6549 1 1035 523 345 67 5 chr5 59084013 59084237 -93453022 + Lx8 LINE L1 6803 7040 -433 1 1035 1836 133 37 57 chr5 59084333 59084684 -93452575 - L1_Mur2 LINE L1 -705 5181 4838 1 1035 12887 52 4 0 chr5 59084682 59087049 -93450210 - L1Md_F2 LINE L1 0 6582 4208 1 1035 486 0 0 0 chr5 59087049 59087103 -93450156 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1035 3452 138 10 81 chr5 59087103 59087834 -93449425 - L1_Mur2 LINE L1 -1035 4842 4164 1 1035 6203 182 42 1 chr5 59087823 59089022 -93448237 + Lx3C LINE L1 5727 6975 -1 1 1035 474 83 0 0 chr5 59091265 59091337 -93445922 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1035 1033 213 72 42 chr5 59091897 59092263 -93444996 + ORR1C2 LTR MaLR 22 381 -13 1 1035 413 311 45 19 chr5 59092901 59093152 -93444107 - Lx7 LINE L1 -1867 5829 5599 1 1035 4079 84 4 2 chr5 59093156 59093719 -93443540 - L1_Mus3 LINE L1 -12 6626 6063 1 1035 204 40 0 0 chr5 59093956 59093981 -93443278 + (GA)n Simple_repeat Simple_repeat 1 25 0 1 1035 365 218 127 27 chr5 59093995 59094264 -93442995 - L1_Mur3 LINE L1 -1688 4198 3891 1 1035 216 0 0 0 chr5 59094310 59094334 -93442925 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1035 364 270 50 10 chr5 59094950 59095051 -93442208 - B1_Mur2 SINE Alu -1 148 44 1 1035 21 36 0 0 chr5 59095898 59095926 -93441333 + AT_rich Low_complexity Low_complexity 1 28 0 1 1035 256 353 0 29 chr5 59095933 59096003 -93441256 - ID4_ SINE ID -14 69 2 1 1035 568 282 91 45 chr5 59097042 59097373 -93439886 - RLTR15 LTR ERVK -12 347 2 1 1035 274 226 16 31 chr5 59098392 59098456 -93438803 + RLTR25B LTR ERVK 436 498 -530 1 1035 754 78 10 0 chr5 59098401 59098504 -93438755 + B1_Mm SINE Alu 44 147 0 1 1035 21 0 0 0 chr5 59098504 59098525 -93438734 + AT_rich Low_complexity Low_complexity 1 21 0 1 1035 777 350 89 27 chr5 59102431 59103016 -93434243 - Lx8 LINE L1 -11 7462 6842 1 1035 306 350 16 16 chr5 59103047 59103172 -93434087 - Lx8 LINE L1 -720 6753 6629 1 1035 233 211 0 50 chr5 59103553 59103633 -93433626 + MTC-int LTR MaLR 985 1060 -198 1 1035 540 298 33 29 chr5 59103655 59103915 -93433344 - Lx7 LINE L1 -228 7245 6961 1 1035 371 365 101 0 chr5 59104161 59104264 -93432995 - B4A SINE B4 -91 201 85 1 1035 324 0 0 0 chr5 59104264 59104300 -93432959 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1035 371 365 101 0 chr5 59104300 59104355 -93432904 - B4A SINE B4 -208 84 28 1 1035 37832 42 0 2 chr5 59104409 59110537 -93426722 - L1Md_T LINE L1 0 6585 374 1 1035 27 0 0 0 chr5 59110833 59110860 -93426399 + AT_rich Low_complexity Low_complexity 1 27 0 1 1035 238 216 0 0 chr5 59111195 59111246 -93426013 + T-rich Low_complexity Low_complexity 1 51 0 1 129 16202 102 28 7 chr5 59111255 59114230 -93423029 - MusHAL1 LINE L1 -155 3198 158 1 1036 2046 124 12 12 chr5 59114532 59114859 -93422400 + ORR1A2 LTR MaLR 1 327 0 1 1036 351 332 61 35 chr5 59114931 59115128 -93422131 - ORR1E LTR MaLR -107 252 51 1 1036 23 86 0 0 chr5 59115151 59115209 -93422050 + AT_rich Low_complexity Low_complexity 1 58 0 1 1036 35367 38 1 0 chr5 59116160 59122817 -93414442 + L1Md_T LINE L1 1 5589 -297 1 1036 8984 5 0 0 chr5 59122817 59123837 -93413422 + L1Md_T LINE L1 5590 6585 0 1 1036 21 0 0 0 chr5 59124572 59124593 -93412666 + AT_rich Low_complexity Low_complexity 1 21 0 1 1036 796 299 9 0 chr5 59124599 59124813 -93412446 - B3 SINE B2 0 216 1 1 1036 1130 82 0 7 chr5 59124875 59125023 -93412236 + B1_Mus1 SINE Alu 1 147 -1 1 1036 469 107 8 62 chr5 59125023 59125153 -93412106 + (TAAA)n Simple_repeat Simple_repeat 1 123 0 1 1036 207 0 0 0 chr5 59125185 59125208 -93412051 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1036 1387 186 39 4 chr5 59125231 59125490 -93411769 - Lx LINE L1 -260 6394 6127 1 1036 1090 173 84 9 chr5 59125476 59125703 -93411556 + Lx LINE L1 6398 6641 -13 1 1036 186 103 0 0 chr5 59125818 59125847 -93411412 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1036 258 32 0 0 chr5 59126138 59126169 -93411090 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1036 838 89 146 0 chr5 59126173 59126296 -93410963 - B1_Mus1 SINE Alu -7 141 1 1 1036 306 0 0 0 chr5 59127589 59127623 -93409636 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1036 231 36 0 0 chr5 59127623 59127650 -93409609 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1036 24 0 0 0 chr5 59128783 59128807 -93408452 + AT_rich Low_complexity Low_complexity 1 24 0 1 1036 195 100 0 0 chr5 59128906 59128936 -93408323 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1036 1676 322 84 16 chr5 59129371 59130179 -93407080 + RCHARR1 DNA MER1_type 101 963 -11 1 1036 326 49 32 16 chr5 59130684 59130746 -93406513 - L1Md_F3 LINE L1 0 6584 6522 1 1036 22 35 0 0 chr5 59132478 59132507 -93404752 + AT_rich Low_complexity Low_complexity 1 29 0 1 1036 29 70 0 0 chr5 59132554 59132611 -93404648 + AT_rich Low_complexity Low_complexity 1 57 0 1 1036 21 36 0 0 chr5 59132686 59132714 -93404545 + AT_rich Low_complexity Low_complexity 1 28 0 1 1036 21 82 0 0 chr5 59133207 59133256 -93404003 + AT_rich Low_complexity Low_complexity 1 49 0 1 1036 485 71 14 0 chr5 59133311 59133381 -93403878 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1036 22 35 0 0 chr5 59135013 59135042 -93402217 + AT_rich Low_complexity Low_complexity 1 29 0 1 1036 416 303 105 40 chr5 59135561 59135840 -93401419 + RMER20B LTR ERVK 174 466 -50 1 1036 265 365 47 0 chr5 59137628 59137735 -93399524 - B1F SINE Alu -35 114 3 1 1036 191 88 29 0 chr5 59137970 59138004 -93399255 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1036 23 0 0 0 chr5 59139980 59140003 -93397256 + AT_rich Low_complexity Low_complexity 1 23 0 1 1036 286 225 37 12 chr5 59140011 59140092 -93397167 + Lx6 LINE L1 7367 7449 -11 1 1036 636 14 0 0 chr5 59140234 59140307 -93396952 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1036 405 0 0 0 chr5 59140487 59140532 -93396727 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1036 216 0 0 0 chr5 59140532 59140555 -93396704 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1036 1310 249 91 68 chr5 59140930 59141434 -93395825 - RLTR40 LTR ERVK -162 655 140 1 1036 399 268 27 80 chr5 59141497 59141647 -93395612 - Lx5 LINE L1 -18 7032 6891 1 1036 381 288 36 7 chr5 59141648 59141788 -93395471 - Lx9 LINE L1 -766 6878 6735 1 1036 414 292 63 68 chr5 59141795 59142001 -93395258 - Lx9 LINE L1 -1135 6509 6305 1 1036 237 283 77 44 chr5 59142243 59142424 -93394835 - L1MA9 LINE L1 -349 5963 5777 1 1036 537 58 0 0 chr5 59142546 59142615 -93394644 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1 1036 1879 251 45 99 chr5 59142646 59143571 -93393688 + RMER17B LTR ERVK 1 884 -74 1 1036 888 320 52 80 chr5 59145106 59145622 -93391637 - Lx8 LINE L1 0 7473 6972 2 1036 21 0 0 0 chr5 59146251 59146272 -93390987 + AT_rich Low_complexity Low_complexity 1 21 0 2 1036 207 0 0 0 chr5 59147420 59147443 -93389816 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1036 809 270 105 51 chr5 59148636 59148987 -93388272 + ORR1D1 LTR MaLR 1 370 -4 2 1036 982 83 14 7 chr5 59149124 59149269 -93387990 - B1_Mus1 SINE Alu 0 148 3 2 1036 886 312 85 21 chr5 59149279 59149701 -93387558 - Lx9 LINE L1 -8 7636 7188 2 1036 595 310 45 18 chr5 59150328 59150548 -93386711 - B4 SINE B4 -65 227 2 2 1036 534 16 0 0 chr5 59150688 59150751 -93386508 + (TTTTG)n Simple_repeat Simple_repeat 1 63 0 2 1036 997 105 0 0 chr5 59150753 59150886 -93386373 - B1_Mus1 SINE Alu -15 133 1 2 1036 337 118 0 0 chr5 59150908 59150959 -93386300 - L1Md_F2 LINE L1 -22 6560 6510 2 1036 1037 192 19 15 chr5 59151136 59151342 -93385917 + ORR1B1 LTR MaLR 188 394 0 2 1036 595 35 23 12 chr5 59151357 59151443 -93385816 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 2 1036 252 375 10 10 chr5 59151703 59151800 -93385459 + B4 SINE B4 147 243 -49 2 1036 261 0 0 0 chr5 59152517 59152546 -93384713 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1036 549 0 0 0 chr5 59152546 59152606 -93384653 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1036 27 0 0 0 chr5 59152793 59152820 -93384439 + AT_rich Low_complexity Low_complexity 1 27 0 2 1036 22 56 0 0 chr5 59152842 59152878 -93384381 + AT_rich Low_complexity Low_complexity 1 36 0 2 1036 1197 99 27 21 chr5 59153157 59153343 -93383916 + B2_Mm1t SINE B2 2 188 -5 2 1036 698 276 10 24 chr5 59153843 59154051 -93383208 - Lx7 LINE L1 -682 7014 6810 2 1036 201 304 0 0 chr5 59154125 59154204 -93383055 + T-rich Low_complexity Low_complexity 1 79 0 2 1036 204 191 0 41 chr5 59154310 59154359 -93382900 + GA-rich Low_complexity Low_complexity 2 48 0 2 1036 280 262 37 12 chr5 59154374 59154455 -93382804 + B4 SINE B4 2 84 -208 2 1036 657 69 0 0 chr5 59154665 59154752 -93382507 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 1036 396 0 0 0 chr5 59155607 59155651 -93381608 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1036 350 262 107 63 chr5 59156516 59156675 -93380584 + RMER30 DNA MER1_type 14 179 -23 2 1036 291 289 14 79 chr5 59156994 59157133 -93380126 - Lx9 LINE L1 -1148 6496 6367 2 1036 1811 223 45 12 chr5 59157595 59157995 -93379264 + MTC LTR MaLR 1 413 -8 2 1036 919 159 164 0 chr5 59158610 59158799 -93378460 - URR1A DNA MER1_type -6 220 1 2 1036 24 32 0 0 chr5 59159247 59159278 -93377981 + AT_rich Low_complexity Low_complexity 1 31 0 2 1036 246 312 24 118 chr5 59159498 59159625 -93377634 - PB1D10 SINE Alu 0 117 3 2 1036 1866 160 18 9 chr5 59159644 59159978 -93377281 + Lx3B LINE L1 6636 6972 -1 2 1036 21 0 0 0 chr5 59159978 59159999 -93377260 + AT_rich Low_complexity Low_complexity 1 21 0 2 1036 924 61 0 0 chr5 59160356 59160488 -93376771 + (GA)n Simple_repeat Simple_repeat 1 132 0 2 1036 1308 201 100 11 chr5 59160566 59160750 -93376509 + ORR1B1 LTR MaLR 88 284 -110 2 1036 192 77 0 0 chr5 59160750 59160776 -93376483 + (ATG)n Simple_repeat Simple_repeat 2 27 0 2 1036 1308 201 100 11 chr5 59160776 59160872 -93376387 + ORR1B1 LTR MaLR 285 393 -1 2 1036 352 308 23 28 chr5 59162175 59162324 -93374935 + B1F SINE Alu 2 147 -2 2 1036 904 317 35 38 chr5 59162387 59162705 -93374554 + MTE2a LTR MaLR 63 379 0 2 1036 277 278 22 0 chr5 59162705 59162794 -93374465 - MLT2C1 LTR ERVL -306 91 1 2 1036 22 0 0 0 chr5 59162815 59162837 -93374422 + AT_rich Low_complexity Low_complexity 1 22 0 2 1036 378 175 0 0 chr5 59164100 59164157 -93373102 + RLTR26 LTR ERVK 5 61 -581 2 1036 3675 234 39 26 chr5 59164185 59164460 -93372799 - Lx5 LINE L1 -493 6557 6276 2 1036 1717 166 21 59 chr5 59164460 59164799 -93372460 - ORR1A3 LTR MaLR 0 326 1 2 1036 3675 214 50 16 chr5 59164799 59165845 -93371414 - Lx5 LINE L1 -775 6275 5194 2 1036 2810 195 58 17 chr5 59165861 59166756 -93370503 - Lx5 LINE L1 -4026 1851 891 2 1036 1177 222 38 56 chr5 59167053 59167320 -93369939 - RLTR41 LTR ERV1 -17 429 168 2 1036 200 300 0 0 chr5 59167348 59167408 -93369851 + C-rich Low_complexity Low_complexity 1 60 0 2 1036 312 103 31 94 chr5 59167508 59167572 -93369687 - RLTR41 LTR ERV1 -386 60 1 2 1036 472 338 4 129 chr5 59167746 59167987 -93369272 - ID_B1 SINE B4 -9 215 5 2 1036 297 0 0 0 chr5 59168225 59168258 -93369001 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1036 35380 34 0 1 chr5 59168935 59174577 -93362682 + L1Md_T LINE L1 1 5589 -297 2 1036 8954 6 0 0 chr5 59174577 59175573 -93361686 + L1Md_T LINE L1 5590 6585 0 2 1036 4363 223 35 17 chr5 59175757 59176758 -93360501 + Lx4B LINE L1 6032 7050 -8 2 1036 26 0 0 0 chr5 59177015 59177041 -93360218 + AT_rich Low_complexity Low_complexity 1 26 0 2 1036 614 113 6 117 chr5 59177105 59177276 -93359983 - RMER17B LTR ERVK -495 463 312 2 1036 1356 181 34 4 chr5 59178785 59179051 -93358208 - Lx2 LINE L1 -4 6993 6720 2 1036 772 362 92 22 chr5 59179237 59179684 -93357575 + MLT2B3 LTR ERVL 1 478 -76 2 1036 877 49 16 0 chr5 59179718 59179841 -93357418 + (TCTA)n Simple_repeat Simple_repeat 4 128 0 2 1036 25 51 0 0 chr5 59179849 59179888 -93357371 + AT_rich Low_complexity Low_complexity 1 39 0 2 1036 429 20 0 0 chr5 59180931 59180981 -93356278 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1036 745 291 14 29 chr5 59181153 59181362 -93355897 - Lx6 LINE L1 -40 7420 7215 2 1036 1348 289 143 4 chr5 59181384 59181895 -93355364 - Lx6 LINE L1 -358 7102 6521 2 1036 1149 277 47 33 chr5 59181905 59182354 -93354905 - Lx6 LINE L1 -1194 6266 5809 2 1036 607 248 27 45 chr5 59182848 59183068 -93354191 + Lx9 LINE L1 6703 6918 -726 2 1036 295 306 68 14 chr5 59183039 59183148 -93354111 + Lx9 LINE L1 7399 7517 -127 2 1036 321 26 0 0 chr5 59183148 59183186 -93354073 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1036 295 306 68 14 chr5 59183186 59183298 -93353961 + Lx9 LINE L1 7518 7632 -12 2 1036 197 65 0 31 chr5 59183302 59183334 -93353925 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1036 200 315 127 0 chr5 59183602 59183731 -93353528 + MIRb SINE MIR 77 226 -42 2 1036 1206 92 0 0 chr5 59184104 59184278 -93352981 + (TTC)n Simple_repeat Simple_repeat 1 174 0 2 1036 434 157 0 12 chr5 59184296 59184380 -93352879 + CT-rich Low_complexity Low_complexity 1 83 0 2 1036 294 349 28 0 chr5 59184388 59184494 -93352765 - PB1D7 SINE Alu -6 114 6 2 1036 21 71 0 0 chr5 59184508 59184550 -93352709 + AT_rich Low_complexity Low_complexity 1 42 0 2 1036 565 38 12 12 chr5 59185515 59185596 -93351663 + (TA)n Simple_repeat Simple_repeat 1 81 0 2 1036 26 0 0 0 chr5 59185902 59185928 -93351331 + AT_rich Low_complexity Low_complexity 1 26 0 2 1036 2629 156 7 19 chr5 59185938 59186402 -93350857 - Lx3A LINE L1 -7 6974 6517 2 1036 235 362 32 0 chr5 59186471 59186565 -93350694 + PB1D10 SINE Alu 21 117 0 2 1036 1093 63 0 0 chr5 59187454 59187596 -93349663 - B1_Mus1 SINE Alu -5 143 2 2 1036 191 97 0 101 chr5 59188058 59188127 -93349132 + (TCTCTG)n Simple_repeat Simple_repeat 6 67 0 2 1036 370 122 40 0 chr5 59188192 59188266 -93348993 + GA-rich Low_complexity Low_complexity 3 79 0 2 1036 234 307 11 0 chr5 59188303 59188391 -93348868 - Lx7 LINE L1 -399 7297 7209 2 1036 502 289 94 25 chr5 59188431 59188633 -93348626 - Lx7 LINE L1 -677 7019 6804 2 1036 723 44 0 0 chr5 59188931 59189022 -93348237 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 2 1036 26 50 0 0 chr5 59189816 59189856 -93347403 + AT_rich Low_complexity Low_complexity 1 40 0 2 1036 1197 70 0 0 chr5 59190267 59190425 -93346834 + L1_Mus1 LINE L1 6406 6563 -4 2 1036 180 0 0 0 chr5 59191393 59191413 -93345846 + (TCC)n Simple_repeat Simple_repeat 3 22 0 2 1036 2405 153 65 26 chr5 59191423 59191887 -93345372 - RLTR45 LTR ERVK 0 482 1 2 1036 358 280 8 17 chr5 59191888 59192008 -93345251 + CT-rich Low_complexity Low_complexity 2 120 0 2 1036 949 300 32 22 chr5 59192017 59192331 -93344928 - Lx6 LINE L1 -34 7426 7110 2 1036 316 143 14 14 chr5 59192666 59192737 -93344522 + CT-rich Low_complexity Low_complexity 1 71 0 2 1036 230 233 0 0 chr5 59192794 59192837 -93344422 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 2 1036 27 29 0 0 chr5 59193083 59193117 -93344142 + AT_rich Low_complexity Low_complexity 1 34 0 2 1036 207 139 0 0 chr5 59193169 59193205 -93344054 + (TATG)n Simple_repeat Simple_repeat 4 39 0 2 1036 947 109 43 0 chr5 59193310 59193448 -93343811 + B1_Mus2 SINE Alu 4 147 0 2 1036 311 123 35 0 chr5 59193448 59193505 -93343754 + A-rich Low_complexity Low_complexity 5 63 0 2 1036 28 0 0 0 chr5 59193859 59193887 -93343372 + AT_rich Low_complexity Low_complexity 1 28 0 2 1036 23 54 0 0 chr5 59195062 59195099 -93342160 + AT_rich Low_complexity Low_complexity 1 37 0 2 1036 510 320 44 44 chr5 59195379 59195559 -93341700 - B4A SINE B4 -8 284 105 2 1036 2121 144 3 0 chr5 59195813 59196139 -93341120 - ORR1A2 LTR MaLR 0 327 1 2 1036 1848 117 9 60 chr5 59196483 59196819 -93340440 + RLTRETN_Mm LTR ERVK 1 319 -3 2 1036 189 0 0 0 chr5 59196819 59196840 -93340419 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1036 223 178 0 0 chr5 59197718 59197763 -93339496 + T-rich Low_complexity Low_complexity 1 45 0 2 1036 22 35 0 0 chr5 59198369 59198398 -93338861 + AT_rich Low_complexity Low_complexity 1 29 0 2 1036 1492 188 46 37 chr5 59199836 59200162 -93337097 + ORR1A4 LTR MaLR 1 329 0 2 1036 310 353 6 74 chr5 59200608 59200695 -93336564 + B4 SINE B4 5 88 -204 2 1036 955 89 13 6 chr5 59200695 59200853 -93336406 + L1_Mus3 LINE L1 6476 6634 -4 2 1036 310 354 31 69 chr5 59200853 59201012 -93336247 + B4 SINE B4 89 248 -44 2 1036 556 197 6 27 chr5 59201050 59201233 -93336026 + G-rich Low_complexity Low_complexity 2 180 0 2 1036 299 308 6 50 chr5 59201254 59201435 -93335824 + GA-rich Low_complexity Low_complexity 4 176 0 2 1036 330 45 0 0 chr5 59202487 59202531 -93334728 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1036 212 263 104 13 chr5 59204430 59204507 -93332752 + PB1D7 SINE Alu 10 93 -27 2 1036 242 196 18 0 chr5 59204941 59204997 -93332262 - Lx9 LINE L1 -7 7637 7581 3 1036 1248 182 5 0 chr5 59204997 59205211 -93332048 - URR1B DNA MER1_type 0 225 11 3 1036 262 221 0 42 chr5 59205229 59205300 -93331959 - Lx9 LINE L1 -57 7587 7520 3 1036 468 99 0 0 chr5 59205301 59205372 -93331887 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1036 457 233 52 8 chr5 59205374 59205508 -93331751 - Lx9 LINE L1 -170 7474 7335 3 1036 21 36 0 0 chr5 59205766 59205794 -93331465 + AT_rich Low_complexity Low_complexity 1 28 0 3 1036 258 378 0 0 chr5 59205807 59205963 -93331296 - L1_Mur3 LINE L1 -7476 236 81 3 1036 370 356 8 25 chr5 59206266 59206466 -93330793 - B4 SINE B4 -18 274 77 3 1036 582 179 0 0 chr5 59206493 59206666 -93330593 + GA-rich Low_complexity Low_complexity 2 174 0 3 1036 353 352 27 27 chr5 59206698 59206882 -93330377 - B4A SINE B4 -26 266 83 3 1036 204 40 0 0 chr5 59207209 59207234 -93330025 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1036 1162 68 0 0 chr5 59207234 59207381 -93329878 - B1_Mus2 SINE Alu 0 147 1 3 1036 26 74 0 0 chr5 59207802 59207856 -93329403 + AT_rich Low_complexity Low_complexity 1 54 0 3 1036 5901 132 34 3 chr5 59207952 59208904 -93328355 + Lx2 LINE L1 6016 6996 -1 3 1036 264 295 0 49 chr5 59209505 59209587 -93327672 + ID4 SINE ID 3 80 -3 3 1036 22 35 0 0 chr5 59211151 59211180 -93326079 + AT_rich Low_complexity Low_complexity 1 29 0 3 1036 5993 98 12 46 chr5 59211298 59212232 -93325027 - Lx3_Mus LINE L1 -474 6535 5634 3 1036 3420 75 13 2 chr5 59212232 59212710 -93324549 + Lx3_Mus LINE L1 6527 7009 0 3 1036 374 317 50 70 chr5 59213110 59213351 -93323908 + ORR1E LTR MaLR 1 236 -123 3 1036 30 0 0 0 chr5 59213693 59213723 -93323536 + AT_rich Low_complexity Low_complexity 1 30 0 3 1036 423 0 0 0 chr5 59214743 59214790 -93322469 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1036 27 49 0 0 chr5 59215172 59215213 -93322046 + AT_rich Low_complexity Low_complexity 1 41 0 3 1036 22 0 0 0 chr5 59217108 59217130 -93320129 + AT_rich Low_complexity Low_complexity 1 22 0 3 1036 585 0 0 0 chr5 59217466 59217531 -93319728 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 3 1036 378 0 0 0 chr5 59218589 59218631 -93318628 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1036 652 241 122 81 chr5 59218699 59218970 -93318289 + RLTR12B LTR ERVK 18 299 -229 3 1036 1136 30 17 23 chr5 59218970 59219143 -93318116 + (GGAGA)n Simple_repeat Simple_repeat 5 176 0 3 1036 279 0 0 0 chr5 59219143 59219174 -93318085 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1036 259 265 217 104 chr5 59219192 59219432 -93317827 + RLTR12B LTR ERVK 258 524 -4 3 1036 22 0 0 0 chr5 59220088 59220110 -93317149 + AT_rich Low_complexity Low_complexity 1 22 0 3 1036 441 289 66 0 chr5 59220364 59220485 -93316774 + ID_B1 SINE B4 94 222 -2 3 1036 6330 7 0 0 chr5 59221379 59222082 -93315177 - L1Md_T LINE L1 0 6582 5880 3 1036 3644 24 0 0 chr5 59222082 59222501 -93314758 + L1Md_T LINE L1 5454 5872 -11 3 1036 689 70 10 0 chr5 59222971 59223071 -93314188 + (TC)n Simple_repeat Simple_repeat 1 101 0 3 1036 18698 172 35 11 chr5 59224332 59226590 -93310669 - Lx4A LINE L1 0 7058 4731 3 1036 384 31 30 30 chr5 59226590 59226657 -93310602 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 3 1036 18698 175 36 23 chr5 59226657 59229375 -93307884 - Lx4A LINE L1 -1147 4730 1982 3 1036 2132 244 88 69 chr5 59229371 59230264 -93306995 - Lx4A LINE L1 -5907 1077 78 3 1036 2220 285 60 33 chr5 59230269 59231310 -93305949 + L1_Mur3 LINE L1 4704 5772 -108 3 1036 430 259 56 45 chr5 59231309 59231500 -93305759 - L1_Mur3 LINE L1 -597 5694 5458 3 1036 919 152 79 67 chr5 59231503 59231609 -93305650 + L1_Mur1 LINE L1 1391 1483 -4394 3 1036 477 0 0 0 chr5 59231609 59231662 -93305597 + (TAA)n Simple_repeat Simple_repeat 1 53 0 3 1036 919 152 79 67 chr5 59231662 59231794 -93305465 + L1_Mur1 LINE L1 1484 1631 -4246 3 1036 360 64 0 0 chr5 59231794 59231841 -93305418 + (CAAGA)n Simple_repeat Simple_repeat 2 48 0 3 1036 919 152 79 67 chr5 59231841 59231855 -93305404 + L1_Mur1 LINE L1 1632 1645 -4232 3 1036 2322 114 9 84 chr5 59231842 59232272 -93304987 + L1_Mur1 LINE L1 4644 5041 -845 3 1036 3243 169 11 9 chr5 59232282 59232854 -93304405 + Lx3B LINE L1 6399 6971 -2 3 1036 229 185 0 18 chr5 59232906 59232961 -93304298 - L1_Mur3 LINE L1 -1193 4687 4634 3 1036 423 56 0 0 chr5 59232968 59233022 -93304237 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1036 308 295 71 33 chr5 59233033 59233215 -93304044 - L1_Mur3 LINE L1 -1480 4663 4475 3 1036 24 0 0 0 chr5 59233240 59233264 -93303995 + AT_rich Low_complexity Low_complexity 1 24 0 3 1036 21 0 0 0 chr5 59233452 59233473 -93303786 + AT_rich Low_complexity Low_complexity 1 21 0 3 1036 23 33 0 0 chr5 59233778 59233808 -93303451 + AT_rich Low_complexity Low_complexity 1 30 0 3 1036 25 51 0 0 chr5 59234154 59234193 -93303066 + AT_rich Low_complexity Low_complexity 1 39 0 3 1036 934 43 0 0 chr5 59234312 59234427 -93302832 - L1_Mus2 LINE L1 -217 6349 6235 3 1036 23 0 0 0 chr5 59235555 59235578 -93301681 + AT_rich Low_complexity Low_complexity 1 23 0 3 1036 1816 146 7 0 chr5 59235964 59236252 -93301007 - Lx2 LINE L1 0 6997 6708 3 1036 253 274 161 8 chr5 59237042 59237160 -93300099 - Lx6 LINE L1 0 7460 7325 3 1036 231 36 0 0 chr5 59237170 59237198 -93300061 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1036 864 283 0 0 chr5 59237198 59237410 -93299849 - Lx6 LINE L1 -127 7333 7122 3 1036 300 275 7 130 chr5 59238598 59238736 -93298523 - MIR3 SINE MIR -4 204 84 3 1036 24 53 0 0 chr5 59238826 59238864 -93298395 + AT_rich Low_complexity Low_complexity 1 38 0 3 1036 335 338 46 58 chr5 59241259 59241466 -93295793 + ORR1E LTR MaLR 9 201 -169 3 1036 735 348 76 148 chr5 59241587 59241743 -93295516 + MTE-int LTR MaLR 6 162 -1418 3 1036 3158 37 0 0 chr5 59241743 59242120 -93295139 + L1Md_T LINE L1 6205 6581 -1 3 1036 735 348 76 148 chr5 59242120 59242959 -93294300 + MTE-int LTR MaLR 163 930 -650 3 1036 234 0 0 0 chr5 59242967 59242993 -93294266 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1037 279 338 61 36 chr5 59245101 59245380 -93291879 + B4A SINE B4 3 288 -4 3 1037 432 37 0 0 chr5 59245412 59245466 -93291793 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1037 181 91 68 0 chr5 59246389 59246433 -93290826 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1037 414 0 0 0 chr5 59246829 59246875 -93290384 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1037 513 0 0 0 chr5 59246875 59246931 -93290328 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 1037 390 410 37 17 chr5 59247768 59248068 -93289191 - MTE-int LTR MaLR -410 1170 865 3 1037 227 356 77 54 chr5 59248450 59248747 -93288512 - MTE-int LTR MaLR -1202 378 75 3 1037 194 81 0 26 chr5 59250063 59250101 -93287158 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 3 1037 362 205 35 35 chr5 59250368 59250454 -93286805 - B3 SINE B2 0 216 131 3 1037 1286 342 60 21 chr5 59251225 59251414 -93285845 + Lx7 LINE L1 6602 6786 -910 3 1037 1867 122 14 0 chr5 59251414 59251700 -93285559 - Lx LINE L1 -4 6650 6361 3 1037 1286 342 60 21 chr5 59251700 59252190 -93285069 + Lx7 LINE L1 6787 7308 -388 3 1037 348 190 0 0 chr5 59252213 59252292 -93284967 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 1037 4959 181 103 124 chr5 59252711 59254203 -93283056 - Lx4B LINE L1 -38 7020 5555 3 1037 241 0 39 58 chr5 59254203 59254255 -93283004 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 1037 3066 186 5 11 chr5 59254255 59254497 -93282762 - Lx4B LINE L1 -323 5554 5316 3 1037 14918 154 18 28 chr5 59254486 59255870 -93281389 - Lx2B LINE L1 -4 6996 5621 3 1037 549 0 0 0 chr5 59255870 59255931 -93281328 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 1037 14918 169 62 25 chr5 59255931 59256376 -93280883 - Lx2B LINE L1 -257 5620 5100 3 1037 4460 98 101 22 chr5 59256376 59257086 -93280173 - L1_Mus3 LINE L1 -3 6635 5870 3 1037 14918 169 62 25 chr5 59257086 59259403 -93277856 - Lx2B LINE L1 -778 5099 2735 3 1037 3482 88 0 20 chr5 59259403 59259901 -93277358 - L1Md_F2 LINE L1 -5 6577 6090 3 1037 14918 169 62 25 chr5 59259901 59260144 -93277115 - Lx2B LINE L1 -3143 2734 2492 3 1037 957 227 19 52 chr5 59260144 59260413 -93276846 + RMER3D-int LTR ERVK 2578 2837 -5 3 1037 2538 185 40 28 chr5 59260418 59260964 -93276295 + RLTR31_Mur LTR ERVK 1 553 0 3 1037 2381 262 26 23 chr5 59260967 59261541 -93275718 - RMER1A Other Other -191 839 264 3 1037 483 120 29 20 chr5 59261684 59261786 -93275473 + L1_Mus3 LINE L1 6532 6634 -4 3 1037 28 29 0 0 chr5 59261839 59261874 -93275385 + AT_rich Low_complexity Low_complexity 1 35 0 3 1037 516 239 145 17 chr5 59261876 59262055 -93275204 - Lx4B LINE L1 -4 7054 6853 3 1037 472 281 86 48 chr5 59262301 59262488 -93274771 - B3A SINE B2 -3 195 2 3 1037 24 32 0 0 chr5 59262672 59262703 -93274556 + AT_rich Low_complexity Low_complexity 1 31 0 3 1037 21 0 0 0 chr5 59262986 59263007 -93274252 + AT_rich Low_complexity Low_complexity 1 21 0 3 1037 46 33 0 0 chr5 59263572 59263632 -93273627 + AT_rich Low_complexity Low_complexity 1 60 0 3 1037 27 49 0 0 chr5 59263875 59263916 -93273343 + AT_rich Low_complexity Low_complexity 1 41 0 3 1037 215 318 91 85 chr5 59263922 59264087 -93273172 + B2_Mm2 SINE B2 13 178 -17 3 1037 37667 44 6 3 chr5 59264842 59271154 -93266105 - L1Md_T LINE L1 0 6585 154 3 1037 732 218 8 0 chr5 59271694 59271827 -93265432 - BGLII_B LTR ERVK -26 415 282 3 1037 428 279 18 61 chr5 59271917 59271979 -93265280 + RLTR20A2 LTR ERVK 421 481 -97 3 1037 818 52 9 0 chr5 59271979 59272095 -93265164 + (TC)n Simple_repeat Simple_repeat 1 117 0 3 1037 428 279 18 61 chr5 59272095 59272196 -93265063 + RLTR20A2 LTR ERVK 482 577 -1 3 1037 294 240 68 96 chr5 59272264 59272513 -93264746 + Lx9 LINE L1 7401 7642 -2 3 1037 608 289 54 22 chr5 59273056 59273099 -93264160 - B3A SINE B2 0 198 157 3 1037 330 98 0 0 chr5 59273099 59273150 -93264109 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1037 608 289 54 22 chr5 59273150 59273290 -93263969 - B3A SINE B2 -42 156 9 3 1037 31 26 0 0 chr5 59275152 59275190 -93262069 + AT_rich Low_complexity Low_complexity 1 38 0 3 1037 2194 190 188 3 chr5 59275368 59275948 -93261311 - RMER6C LTR ERVK 0 690 4 3 1037 1376 300 49 17 chr5 59277240 59277811 -93259448 + Lx5 LINE L1 6465 7008 -42 3 1037 21 71 0 0 chr5 59277825 59277867 -93259392 + AT_rich Low_complexity Low_complexity 1 42 0 3 1037 323 363 71 68 chr5 59277913 59278235 -93259024 + L1M4 LINE L1 5480 5802 -372 3 1037 1505 114 85 3 chr5 59279434 59279716 -93257543 - Lx LINE L1 -2 6652 6348 3 1037 264 30 0 0 chr5 59279742 59279775 -93257484 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1037 916 332 15 0 chr5 59279811 59280142 -93257117 + ERVL-B4-int LTR ERVL 1332 1667 -4047 3 1037 276 306 33 8 chr5 59280214 59280341 -93256918 + ERVL-B4-int LTR ERVL 2126 2262 -3223 3 1037 266 439 40 6 chr5 59280347 59280521 -93256738 - MLT1D LTR MaLR -16 637 458 3 1037 256 276 136 57 chr5 59280691 59280868 -93256391 - MLT1E1A LTR MaLR -465 215 25 3 1037 243 103 0 25 chr5 59280848 59280888 -93256371 - B1_Mus2 SINE Alu -108 39 1 3 1037 962 54 0 15 chr5 59280888 59281009 -93256250 + B1_Mm SINE Alu 29 147 0 4 1037 389 295 74 17 chr5 59281496 59281672 -93255587 - MLT1D LTR MaLR -19 486 301 3 1037 902 34 0 8 chr5 59285199 59285318 -93251941 + (TG)n Simple_repeat Simple_repeat 2 119 0 4 1037 3272 194 6 16 chr5 59286011 59286641 -93250618 - Lx4B LINE L1 -63 6995 6372 4 1037 7314 28 0 0 chr5 59286642 59287495 -93249764 - L1Md_A LINE L1 0 6582 5730 4 1037 1135 221 0 25 chr5 59287484 59287721 -93249538 - Lx4B LINE L1 -676 6382 6152 4 1037 351 0 0 0 chr5 59288437 59288476 -93248783 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1037 2682 268 60 22 chr5 59288933 59289720 -93247539 - Lx6 LINE L1 -449 7011 6195 4 1037 759 22 0 0 chr5 59289720 59289809 -93247450 + (TA)n Simple_repeat Simple_repeat 1 89 0 4 1037 947 224 52 22 chr5 59289820 59290090 -93247169 - Lx9 LINE L1 -128 7516 7239 4 1037 206 211 56 14 chr5 59290392 59290464 -93246795 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1037 243 61 0 0 chr5 59290633 59290666 -93246593 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1037 814 278 65 21 chr5 59290816 59291106 -93246153 + Lx5 LINE L1 6748 7050 0 4 1037 24 0 0 0 chr5 59291111 59291135 -93246124 + AT_rich Low_complexity Low_complexity 1 24 0 4 1037 476 364 56 0 chr5 59292881 59293131 -93244128 + Charlie25 DNA MER1_type 1555 1818 -706 4 1037 273 333 27 9 chr5 59293527 59293639 -93243620 - B3 SINE B2 0 216 103 4 1037 1008 296 47 49 chr5 59294560 59294968 -93242291 - MTD LTR MaLR -12 407 1 4 1037 1723 107 15 0 chr5 59295607 59295942 -93241317 + L1_Mus2 LINE L1 6302 6566 0 4 1037 296 265 0 7 chr5 59296779 59296916 -93240343 + (TA)n Simple_repeat Simple_repeat 1 136 0 4 1037 243 0 0 0 chr5 59297095 59297122 -93240137 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 4 1037 1007 38 0 22 chr5 59297122 59297246 -93240013 - B1_Mm SINE Alu -8 139 17 4 1037 293 301 24 16 chr5 59297255 59297380 -93239879 - Lx9 LINE L1 -181 7463 7338 4 1037 381 355 96 10 chr5 59297836 59298035 -93239224 - MTE-int LTR MaLR -1163 417 202 4 1037 4736 114 4 6 chr5 59298172 59298870 -93238389 - L1_Mus3 LINE L1 -7 6631 5935 4 1037 3521 96 5 3 chr5 59298870 59299451 -93237808 + L1_Mus3 LINE L1 5350 5928 -710 4 1037 189 0 0 0 chr5 59299779 59299800 -93237459 + (CACAA)n Simple_repeat Simple_repeat 5 25 0 4 1037 280 284 0 0 chr5 59299874 59299941 -93237318 + GA-rich Low_complexity Low_complexity 3 69 0 4 1037 359 302 78 0 chr5 59300107 59300223 -93237036 - MER5A DNA MER1_type -3 186 62 4 1037 304 333 0 0 chr5 59301116 59301197 -93236062 - ID_B1 SINE B4 -21 203 123 4 1037 24 0 0 0 chr5 59301352 59301376 -93235883 + AT_rich Low_complexity Low_complexity 1 24 0 4 1037 562 312 180 50 chr5 59301505 59301829 -93235430 - MTD LTR MaLR -15 404 24 4 1037 1104 337 46 50 chr5 59302970 59303735 -93233524 - Lx8 LINE L1 -2 7471 6710 4 1037 442 285 91 23 chr5 59303776 59303825 -93233434 - MTD LTR MaLR -10 409 362 4 1037 600 14 0 0 chr5 59303825 59303894 -93233365 + (GAA)n Simple_repeat Simple_repeat 3 71 0 4 1037 442 285 91 23 chr5 59303894 59304020 -93233239 - MTD LTR MaLR -58 361 222 4 1037 348 319 8 8 chr5 59304038 59304158 -93233101 - MTD LTR MaLR -287 132 13 4 1037 17044 173 26 115 chr5 59304169 59308087 -93229172 + L1Md_F LINE L1 207 3429 -2457 4 1037 2135 104 22 3 chr5 59308087 59308405 -93228854 + L1Md_F2 LINE L1 6259 6582 0 4 1037 17044 181 29 146 chr5 59308405 59310462 -93226797 + L1Md_F LINE L1 3430 5582 -304 4 1037 7172 78 11 12 chr5 59310469 59311463 -93225796 + L1Md_F2 LINE L1 5587 6579 -3 4 1037 359 276 20 130 chr5 59311791 59311991 -93225268 + B3A SINE B2 17 194 -1 4 1037 906 10 0 0 chr5 59312010 59312113 -93225146 + (GAA)n Simple_repeat Simple_repeat 2 104 0 4 1037 379 330 165 15 chr5 59312118 59312191 -93225068 + Lx6 LINE L1 7181 7253 -207 4 1037 1173 89 0 0 chr5 59312191 59312359 -93224900 + (TTTC)n Simple_repeat Simple_repeat 4 171 0 4 1037 379 330 165 15 chr5 59312359 59312491 -93224768 + Lx6 LINE L1 7254 7416 -44 4 1037 1716 221 138 47 chr5 59312491 59313263 -93223996 - RMER6C LTR ERVK -4 716 9 4 1037 266 140 0 0 chr5 59313277 59313327 -93223932 + Lx6 LINE L1 7411 7460 0 4 1037 287 221 76 114 chr5 59313337 59313495 -93223764 + Lx8 LINE L1 5660 5811 -36 4 1037 418 302 6 63 chr5 59313597 59313750 -93223509 + B1_Mur1 SINE Alu 3 149 0 4 1037 1168 325 27 20 chr5 59313760 59314247 -93223012 + Lx8 LINE L1 6191 6680 -793 4 1037 25 31 0 0 chr5 59314283 59314315 -93222944 + AT_rich Low_complexity Low_complexity 1 32 0 4 1037 4972 216 29 13 chr5 59314522 59315616 -93221643 - Lx5 LINE L1 -312 6738 5627 4 1037 345 246 79 66 chr5 59315789 59315941 -93221318 + Lx7 LINE L1 5858 6011 -1685 4 1037 1464 62 5 0 chr5 59315979 59316174 -93221085 + L1Md_F2 LINE L1 6375 6570 -12 4 1037 38358 9 0 1 chr5 59316185 59322388 -93214871 + L1Md_A LINE L1 1 5586 -297 4 1037 8936 7 0 0 chr5 59322388 59323384 -93213875 + L1Md_A LINE L1 5587 6582 0 4 1037 549 30 0 0 chr5 59324408 59324475 -93212784 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1037 37818 31 0 0 chr5 59324645 59331059 -93206200 - L1Md_T LINE L1 0 6585 74 4 1037 605 143 23 120 chr5 59331700 59331875 -93205384 - RMER19B LTR ERVK -441 461 304 4 1037 689 318 14 40 chr5 59331878 59332101 -93205158 + MTEa LTR MaLR 1 217 -162 4 1037 2298 115 43 8 chr5 59332723 59333091 -93204168 + RLTR9A2 LTR ERVK 3 383 0 4 1037 295 264 77 87 chr5 59333093 59333416 -93203843 + ETnERV2-int LTR ERVK 4 323 -2991 4 1037 22 56 0 0 chr5 59333416 59333452 -93203807 + AT_rich Low_complexity Low_complexity 1 36 0 4 1037 13095 144 42 51 chr5 59333483 59336129 -93201130 + ETnERV2-int LTR ERVK 1059 3680 -3726 4 1037 333 130 68 68 chr5 59336620 59336694 -93200565 + ETnERV2-int LTR ERVK 7331 7404 -2 4 1037 1340 108 40 94 chr5 59336695 59336970 -93200289 + RLTR9A2 LTR ERVK 1 260 -123 4 1037 8370 26 37 37 chr5 59337274 59338922 -93198337 - L1Md_T LINE L1 0 6582 4876 4 1037 227 197 45 76 chr5 59338922 59338988 -93198271 + RMER20A LTR ERVK 185 248 -268 4 1037 8370 26 37 37 chr5 59338988 59339097 -93198162 - L1Md_T LINE L1 0 4875 4762 4 1037 951 68 8 0 chr5 59339097 59339230 -93198029 - L1_Mus2 LINE L1 0 6566 6433 4 1037 546 89 12 37 chr5 59339230 59339312 -93197947 + L1_Mus2 LINE L1 6335 6414 -152 4 1037 819 172 14 15 chr5 59339312 59339467 -93197792 + RLTR9A2 LTR ERVK 234 383 0 4 1037 993 344 66 100 chr5 59339482 59339809 -93197450 + Lx8 LINE L1 6549 6883 -590 4 1037 1113 101 0 0 chr5 59339809 59339957 -93197302 + B1_Mus1 SINE Alu 1 148 0 4 1037 993 344 66 100 chr5 59339957 59339999 -93197260 + Lx8 LINE L1 6884 6884 -589 4 1037 270 56 0 0 chr5 59339999 59340035 -93197224 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1037 993 344 66 100 chr5 59340035 59340561 -93196698 + Lx8 LINE L1 6884 7414 -59 4 1037 1004 142 11 0 chr5 59341089 59341265 -93195994 + GA-rich Low_complexity Low_complexity 3 180 0 4 1037 318 87 0 0 chr5 59341419 59341465 -93195794 + (T)n Simple_repeat Simple_repeat 1 46 0 4 1037 423 0 0 0 chr5 59341903 59341950 -93195309 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1037 399 21 0 0 chr5 59342188 59342236 -93195023 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1037 35719 38 4 8 chr5 59342953 59348146 -93189113 + L1Md_T LINE L1 416 5584 -299 4 1037 8353 35 0 1 chr5 59348148 59349143 -93188116 + L1Md_T LINE L1 5587 6580 -2 4 1037 222 128 64 0 chr5 59349330 59349377 -93187882 + T-rich Low_complexity Low_complexity 3 52 0 4 1037 189 96 75 19 chr5 59349569 59349622 -93187637 + T-rich Low_complexity Low_complexity 4 59 0 4 1037 198 0 0 0 chr5 59349717 59349739 -93187520 + (TC)n Simple_repeat Simple_repeat 2 23 0 4 1037 816 158 0 0 chr5 59349739 59349891 -93187368 + (TA)n Simple_repeat Simple_repeat 2 153 0 4 1037 189 0 0 0 chr5 59351121 59351142 -93186117 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1037 1283 41 24 0 chr5 59351429 59351599 -93185660 - L1Md_F3 LINE L1 -14 6570 6397 4 1037 984 34 0 0 chr5 59351599 59351718 -93185541 - L1Md_F3 LINE L1 -514 6070 5952 4 1037 27 0 0 0 chr5 59352101 59352128 -93185131 + AT_rich Low_complexity Low_complexity 1 27 0 4 1037 237 117 50 0 chr5 59352302 59352362 -93184897 + (TATAA)n Simple_repeat Simple_repeat 2 64 0 4 1037 235 362 0 0 chr5 59352565 59352623 -93184636 + RSINE1 SINE B4 3 60 -105 4 1037 228 135 0 0 chr5 59353050 59353087 -93184172 + (TCTCCC)n Simple_repeat Simple_repeat 5 41 0 4 1037 213 39 0 0 chr5 59353098 59353124 -93184135 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1037 648 48 0 0 chr5 59354121 59354205 -93183054 + (CA)n Simple_repeat Simple_repeat 1 84 0 4 1037 23 0 0 0 chr5 59354673 59354696 -93182563 + AT_rich Low_complexity Low_complexity 1 23 0 4 1037 594 0 0 0 chr5 59354808 59354874 -93182385 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1037 354 100 0 0 chr5 59355869 59355929 -93181330 + (CAGAGA)n Simple_repeat Simple_repeat 1 60 0 4 1037 191 296 13 53 chr5 59356527 59356602 -93180657 - L4 LINE RTE -1463 566 495 4 1037 40765 5 3 0 chr5 59357548 59363946 -93173313 - L1Md_A LINE L1 0 6582 214 4 1037 445 182 13 0 chr5 59364119 59364196 -93173063 + B1_Mur4 SINE Alu 71 148 -2 4 1037 340 208 21 0 chr5 59364496 59364592 -93172667 + (TA)n Simple_repeat Simple_repeat 1 98 0 4 1037 27 73 0 0 chr5 59364628 59364683 -93172576 + AT_rich Low_complexity Low_complexity 1 55 0 4 1037 804 104 164 0 chr5 59365061 59365195 -93172064 - L1_Mus3 LINE L1 -226 6412 6257 4 1037 409 82 0 56 chr5 59365195 59365246 -93172013 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1037 414 0 0 0 chr5 59365246 59365292 -93171967 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1037 409 82 0 56 chr5 59365292 59365330 -93171929 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1037 235 203 0 30 chr5 59365578 59365644 -93171615 + (TAA)n Simple_repeat Simple_repeat 3 66 0 4 1037 2062 109 114 9 chr5 59365728 59366071 -93171188 - L1_Mus3 LINE L1 -1 6637 6259 4 1037 405 0 0 0 chr5 59366071 59366116 -93171143 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1037 413 343 55 20 chr5 59369126 59369328 -93167931 - MLT2B2 LTR ERVL -74 441 233 4 1037 230 299 103 0 chr5 59369452 59369539 -93167720 - MLT2B2 LTR ERVL -438 116 21 4 1037 964 207 107 4 chr5 59369976 59370257 -93167002 + Lx9 LINE L1 7328 7637 -7 4 1037 312 273 0 0 chr5 59370398 59370464 -93166795 - Lx9 LINE L1 -993 6651 6586 4 1037 337 252 56 6 chr5 59370527 59370687 -93166572 + Lx9 LINE L1 7477 7644 0 4 1037 252 0 0 0 chr5 59370763 59370791 -93166468 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 4 1037 788 185 193 17 chr5 59370791 59370964 -93166295 - B3 SINE B2 -6 210 4 4 1037 450 157 0 0 chr5 59371692 59371775 -93165484 + (TA)n Simple_repeat Simple_repeat 1 83 0 4 1037 21 0 0 0 chr5 59372216 59372237 -93165022 + AT_rich Low_complexity Low_complexity 1 21 0 4 1037 21 57 0 0 chr5 59373113 59373148 -93164111 + AT_rich Low_complexity Low_complexity 1 35 0 4 1037 21 36 0 0 chr5 59373235 59373263 -93163996 + AT_rich Low_complexity Low_complexity 1 28 0 5 1037 301 22 21 21 chr5 59374661 59374708 -93162551 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1037 1006 87 0 0 chr5 59374708 59374846 -93162413 - B1_Mus1 SINE Alu -9 139 2 5 1038 978 152 0 0 chr5 59376026 59376184 -93161075 + Lx2B LINE L1 5649 5806 -1194 5 1038 5951 140 22 26 chr5 59376215 59377088 -93160171 + RLTR13D2 LTR ERVK 3 874 -149 5 1038 369 0 0 0 chr5 59377088 59377129 -93160130 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1038 5951 140 22 26 chr5 59377129 59377272 -93159987 + RLTR13D2 LTR ERVK 875 1014 -9 5 1038 1724 117 48 64 chr5 59377286 59377597 -93159662 - Lx3A LINE L1 -12 6969 6664 5 1038 3147 228 100 7 chr5 59377597 59378631 -93158628 + Lx3C LINE L1 5816 6974 -2 5 1038 739 124 47 1 chr5 59379054 59379283 -93157976 + Lx3_Mus LINE L1 6681 7009 0 5 1038 33 25 0 0 chr5 59379283 59379323 -93157936 + AT_rich Low_complexity Low_complexity 1 40 0 5 1038 340 321 100 66 chr5 59379458 59379778 -93157481 - MER67D LTR ERV1 -105 409 79 5 1038 189 0 0 0 chr5 59380072 59380093 -93157166 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1038 573 139 0 0 chr5 59380093 59380215 -93157044 + (GA)n Simple_repeat Simple_repeat 1 122 0 5 1038 326 362 9 9 chr5 59380216 59380322 -93156937 - PB1D7 SINE Alu -13 107 2 5 1038 24 53 0 0 chr5 59380415 59380453 -93156806 + AT_rich Low_complexity Low_complexity 1 38 0 5 1038 626 232 71 5 chr5 59380883 59381073 -93156186 + Lx3C LINE L1 6773 6994 -6 5 1038 475 295 92 46 chr5 59381409 59381647 -93155612 + RMER15 LTR ERVL 325 573 -2 5 1038 343 348 119 53 chr5 59384661 59384946 -93152313 + MLT1D LTR MaLR 183 486 -19 5 1038 22 35 0 0 chr5 59385151 59385180 -93152079 + AT_rich Low_complexity Low_complexity 1 29 0 5 1038 303 366 77 13 chr5 59385499 59385654 -93151605 - B4A SINE B4 -127 165 1 5 1038 899 59 0 0 chr5 59387390 59387509 -93149750 + B1_Mm SINE Alu 29 147 0 5 1038 2209 204 58 44 chr5 59387651 59388154 -93149105 + RLTR11A LTR ERVK 1 510 -18 5 1038 212 154 0 0 chr5 59388513 59388552 -93148707 + A-rich Low_complexity Low_complexity 6 44 0 5 1038 567 0 0 0 chr5 59388676 59388739 -93148520 + (TC)n Simple_repeat Simple_repeat 2 64 0 5 1038 367 326 97 7 chr5 59388968 59389113 -93148146 + LTR82A LTR ERVL 96 253 -619 5 1038 214 111 36 36 chr5 59390147 59390203 -93147056 + (TCTCTG)n Simple_repeat Simple_repeat 5 60 0 5 1038 200 327 200 14 chr5 59392677 59392962 -93144297 + L2 LINE L2 2415 2752 -667 5 1038 330 26 0 0 chr5 59392966 59393005 -93144254 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1038 22 0 0 0 chr5 59393467 59393489 -93143770 + AT_rich Low_complexity Low_complexity 1 22 0 5 1038 21 57 0 0 chr5 59393762 59393797 -93143462 + AT_rich Low_complexity Low_complexity 1 35 0 5 1038 495 53 147 0 chr5 59393858 59393933 -93143326 - L1_Mus2 LINE L1 -1 6565 6480 5 1038 2944 27 0 0 chr5 59394425 59394760 -93142499 + IAPLTR1a_Mm LTR ERVK 1 335 -2 5 1038 52603 24 17 6 chr5 59394760 59401161 -93136098 + IAPEz-int LTR ERVK 9 6481 0 5 1038 2992 15 3 0 chr5 59401161 59401497 -93135762 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1038 675 201 67 7 chr5 59401725 59401860 -93135399 + B1_Mus1 SINE Alu 6 148 0 5 1038 21 0 0 0 chr5 59401860 59401881 -93135378 + AT_rich Low_complexity Low_complexity 1 21 0 5 1038 189 121 0 0 chr5 59401924 59401957 -93135302 + (TTA)n Simple_repeat Simple_repeat 3 35 0 5 1038 235 116 0 0 chr5 59404882 59404925 -93132334 + MTC-int LTR MaLR 1002 1044 -214 5 1038 24 0 0 0 chr5 59404925 59404949 -93132310 + AT_rich Low_complexity Low_complexity 1 24 0 5 1038 5006 43 2 0 chr5 59404961 59405562 -93131697 - L1Md_T LINE L1 -2 6580 5979 5 1038 699 12 0 0 chr5 59405765 59405845 -93131414 + (GA)n Simple_repeat Simple_repeat 1 80 0 5 1038 1016 144 0 0 chr5 59406818 59406964 -93130295 + B1_Mus1 SINE Alu 2 147 -1 5 1038 35 24 0 0 chr5 59407311 59407353 -93129906 + AT_rich Low_complexity Low_complexity 1 42 0 5 1038 34 65 0 0 chr5 59407560 59407622 -93129637 + AT_rich Low_complexity Low_complexity 1 62 0 5 1038 244 231 61 15 chr5 59408411 59408477 -93128782 - ORR1D1 LTR MaLR 0 379 311 5 1038 202 202 37 37 chr5 59408506 59408588 -93128671 + T-rich Low_complexity Low_complexity 4 85 0 5 1038 261 377 42 54 chr5 59408616 59408784 -93128475 - ORR1D1 LTR MaLR -124 250 85 5 1038 194 349 17 68 chr5 59409195 59409312 -93127947 + L2c LINE L2 3268 3378 -9 5 1038 460 352 11 6 chr5 59409546 59409729 -93127530 + Lx8 LINE L1 7055 7238 -235 5 1038 5102 84 3 0 chr5 59409732 59410424 -93126835 - L1Md_F2 LINE L1 0 6582 5889 5 1038 30228 103 12 5 chr5 59410424 59415925 -93121334 - L1Md_F LINE L1 -142 5741 201 5 1038 7080 193 22 49 chr5 59415989 59417922 -93119337 + RMER3D-int LTR ERVK 438 2842 0 5 1038 1960 241 76 65 chr5 59417922 59418025 -93119234 + RLTR17 LTR ERVK 1 106 -586 5 1038 2001 133 10 3 chr5 59418025 59418334 -93118925 - RLTR10E LTR ERVK 0 311 1 5 1038 1960 241 76 65 chr5 59418334 59418846 -93118413 + RLTR17 LTR ERVK 107 623 -69 5 1038 409 350 23 69 chr5 59419153 59419328 -93117931 + ORR1D2 LTR MaLR 1 167 -203 5 1038 1957 196 175 82 chr5 59419340 59419972 -93117287 - RMER6C LTR ERVK 0 720 137 5 1038 1149 82 0 0 chr5 59419972 59420118 -93117141 + B1_Mm SINE Alu 1 146 -1 5 1038 1957 188 218 45 chr5 59420118 59420240 -93117019 - RMER6C LTR ERVK -554 136 20 5 1038 1844 79 4 4 chr5 59420240 59420495 -93116764 + L1_Mus2 LINE L1 6312 6566 0 5 1038 1049 110 0 0 chr5 59420776 59420922 -93116337 + B1_Mus1 SINE Alu 1 146 -2 5 1038 198 91 0 0 chr5 59420932 59420965 -93116294 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1038 708 323 45 35 chr5 59421079 59421454 -93115805 - MTEa LTR MaLR 0 379 1 5 1038 1172 234 118 20 chr5 59421625 59421922 -93115337 - RLTR25B LTR ERVK -702 326 1 5 1038 225 311 11 22 chr5 59421922 59422013 -93115246 - RMER20B LTR ERVK -303 324 235 5 1038 594 253 29 8 chr5 59422199 59422358 -93114901 - ORR1C2 LTR MaLR -214 156 2 5 1038 186 43 0 0 chr5 59422362 59422385 -93114874 + (CTATA)n Simple_repeat Simple_repeat 3 25 0 5 1038 209 333 25 44 chr5 59422596 59422756 -93114503 + L2 LINE L2 1582 1738 -1681 5 1038 914 129 43 0 chr5 59422938 59423078 -93114181 + B1_Mus1 SINE Alu 1 146 -2 5 1038 917 134 0 13 chr5 59423078 59423237 -93114022 + (GAAA)n Simple_repeat Simple_repeat 1 157 0 5 1038 24 67 0 0 chr5 59423422 59423467 -93113792 + AT_rich Low_complexity Low_complexity 1 45 0 5 1038 22 35 0 0 chr5 59423700 59423729 -93113530 + AT_rich Low_complexity Low_complexity 1 29 0 5 1038 235 65 43 0 chr5 59423819 59423865 -93113394 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 5 1038 1281 14 0 0 chr5 59423866 59424011 -93113248 - B1_Mus2 SINE Alu 0 147 3 5 1038 271 96 39 0 chr5 59424118 59424170 -93113089 + (TTTCC)n Simple_repeat Simple_repeat 2 55 0 5 1038 1300 19 19 0 chr5 59424172 59424334 -93112925 + (TTCC)n Simple_repeat Simple_repeat 4 168 0 5 1038 366 107 0 0 chr5 59424334 59424390 -93112869 + (TC)n Simple_repeat Simple_repeat 2 57 0 5 1038 497 237 8 34 chr5 59424409 59424527 -93112732 - B1_Mm SINE Alu -1 146 32 5 1038 432 0 0 0 chr5 59424545 59424593 -93112666 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1038 593 136 22 29 chr5 59425664 59425800 -93111459 + GA-rich Low_complexity Low_complexity 3 137 0 5 1038 238 357 7 58 chr5 59426009 59426146 -93111113 + MTEa LTR MaLR 250 379 0 5 1038 3112 245 82 14 chr5 59426237 59427223 -93110036 + Lx7 LINE L1 6644 7696 0 5 1038 283 351 55 39 chr5 59427271 59427452 -93109807 + MTE-int LTR MaLR 138 321 -1049 5 1038 279 337 71 6 chr5 59427458 59427628 -93109631 + B3A SINE B2 2 182 -16 5 1038 3588 180 26 42 chr5 59427879 59428620 -93108639 + Lx3B LINE L1 6243 6971 -2 5 1038 318 378 69 51 chr5 59428725 59429001 -93108258 + MTE-int LTR MaLR 633 913 -667 5 1038 451 322 98 8 chr5 59429922 59430157 -93107102 + MLT1B LTR MaLR 13 268 -122 5 1038 6673 118 21 20 chr5 59430352 59431436 -93105823 - Lx3_Mus LINE L1 -2 7007 5923 5 1038 301 75 0 0 chr5 59431436 59431476 -93105783 + Lx4A LINE L1 5852 5891 -1167 5 1038 349 291 36 18 chr5 59431516 59431628 -93105631 + MTEa LTR MaLR 4 117 -262 5 1038 586 180 33 0 chr5 59431673 59431795 -93105464 - Lx4A LINE L1 -1038 6020 5895 5 1038 5981 158 21 11 chr5 59431795 59432826 -93104433 + Lx4A LINE L1 6017 7058 0 5 1038 1138 88 0 0 chr5 59432831 59432979 -93104280 + B1_Mus1 SINE Alu 1 148 0 5 1038 813 48 0 0 chr5 59434662 59434767 -93102492 - Lx LINE L1 -544 6110 6006 5 1038 33071 80 5 7 chr5 59434774 59440902 -93096357 - L1Md_F2 LINE L1 -1 6581 466 5 1038 4798 106 8 98 chr5 59440937 59441784 -93095475 - L1_Mus1 LINE L1 -4 6563 5793 5 1038 2646 178 14 15 chr5 59441767 59442287 -93094972 + Lx LINE L1 6131 6649 -5 5 1038 1179 169 0 3 chr5 59442500 59442813 -93094446 + (TA)n Simple_repeat Simple_repeat 1 311 0 5 1038 24 0 0 0 chr5 59443670 59443694 -93093565 + AT_rich Low_complexity Low_complexity 1 24 0 5 1038 205 346 0 0 chr5 59444161 59444213 -93093046 + (CG)n Simple_repeat Simple_repeat 2 53 0 5 1038 23 0 0 0 chr5 59445559 59445582 -93091677 + AT_rich Low_complexity Low_complexity 1 23 0 5 1038 33 0 0 0 chr5 59446295 59446328 -93090931 + AT_rich Low_complexity Low_complexity 1 33 0 5 1038 2127 139 112 0 chr5 59446601 59446975 -93090284 + Lx LINE L1 6235 6650 -4 5 1038 274 408 27 13 chr5 59447359 59447508 -93089751 + RMER1C Other Other 383 663 -679 5 1038 937 355 47 11 chr5 59447506 59447871 -93089388 + RMER1A Other Other 90 467 -563 5 1038 228 154 0 0 chr5 59447897 59447936 -93089323 - L1MC2 LINE L1 -258 6086 6048 5 1038 270 329 90 0 chr5 59448604 59448771 -93088488 - L1MD LINE L1 -2389 5606 5425 5 1038 428 322 93 41 chr5 59448886 59449132 -93088127 + MLT1C LTR MaLR 6 264 -203 5 1038 367 330 63 21 chr5 59449352 59449637 -93087622 - L1MC LINE L1 -847 5299 5003 5 1038 543 43 0 0 chr5 59449637 59449707 -93087552 + (TG)n Simple_repeat Simple_repeat 2 71 0 6 1038 408 357 55 19 chr5 59449758 59450083 -93087176 - L1MC LINE L1 -1214 4932 4596 5 1038 462 291 49 76 chr5 59450089 59450353 -93086906 + RLTR15 LTR ERVK 9 265 -94 6 1038 492 345 31 67 chr5 59450614 59450869 -93086390 - MTE2a LTR MaLR -80 299 54 6 1038 12120 105 16 8 chr5 59451021 59453554 -93083705 + L1Md_F2 LINE L1 415 2967 -2916 6 1038 5934 99 0 2 chr5 59453553 59454392 -93082867 + L1Md_F2 LINE L1 4749 5585 -298 6 1038 7001 74 38 4 chr5 59454393 59455346 -93081913 + L1Md_F2 LINE L1 5587 6571 -11 6 1038 242 304 0 28 chr5 59455553 59455624 -93081635 + polypurine Low_complexity Low_complexity 4 72 0 6 1038 371 355 157 36 chr5 59455645 59456102 -93081157 - MLT-int LTR MaLR -1179 556 45 6 1038 411 119 0 0 chr5 59456114 59456181 -93081078 + (CATA)n Simple_repeat Simple_repeat 2 68 0 6 1038 395 360 73 54 chr5 59456191 59456508 -93080751 - MLT1A LTR MaLR -51 323 1 6 1038 224 274 27 0 chr5 59456793 59456866 -93080393 + T-rich Low_complexity Low_complexity 4 78 0 6 1038 401 96 0 40 chr5 59456875 59456951 -93080308 - L1Md_F2 LINE L1 0 6582 6510 6 1038 1491 37 5 0 chr5 59456951 59457139 -93080120 + L1_Mm LINE L1 5131 5319 -564 6 1038 208 296 0 0 chr5 59457140 59457194 -93080065 + CT-rich Low_complexity Low_complexity 3 56 0 6 1038 2572 56 9 12 chr5 59457694 59458035 -93079224 + L1Md_F3 LINE L1 6233 6572 -12 6 1038 360 59 0 0 chr5 59458049 59458100 -93079159 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1038 24 0 0 0 chr5 59458803 59458827 -93078432 + AT_rich Low_complexity Low_complexity 1 24 0 6 1038 375 350 48 17 chr5 59460258 59460488 -93076771 - MER44A DNA MER2_type 0 339 103 6 1038 204 40 0 0 chr5 59460490 59460515 -93076744 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1038 264 276 23 11 chr5 59461189 59461277 -93075982 + GA-rich Low_complexity Low_complexity 5 93 0 6 1038 22 56 0 0 chr5 59461651 59461687 -93075572 + AT_rich Low_complexity Low_complexity 1 36 0 6 1038 5384 210 62 32 chr5 59461751 59461850 -93075409 - Lx5 LINE L1 -171 6879 6785 6 1038 450 0 0 0 chr5 59461850 59461900 -93075359 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 6 1038 5384 189 41 32 chr5 59461900 59463377 -93073882 - Lx5 LINE L1 -266 6784 5252 6 1038 6748 170 21 3 chr5 59463376 59464654 -93072605 + Lx5 LINE L1 3927 5227 -650 6 1038 914 275 166 15 chr5 59464800 59465143 -93072116 - MTD LTR MaLR -14 405 11 6 1038 903 107 0 35 chr5 59465255 59465400 -93071859 + B1_Mus2 SINE Alu 1 140 -7 6 1038 195 125 0 0 chr5 59465400 59465440 -93071819 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 6 1038 270 176 0 0 chr5 59466249 59466300 -93070959 + GA-rich Low_complexity Low_complexity 1 51 0 6 1038 868 275 42 29 chr5 59466376 59466784 -93070475 - L1_Rod LINE L1 -1896 3951 3539 6 1038 221 58 77 0 chr5 59466806 59466858 -93070401 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1038 470 193 11 11 chr5 59468108 59468216 -93069043 + MT2B LTR ERVL 1 108 -425 6 1038 276 282 24 0 chr5 59468282 59468367 -93068892 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 6 1038 865 152 18 0 chr5 59468370 59468535 -93068724 + GA-rich Low_complexity Low_complexity 2 169 0 6 1038 286 140 0 39 chr5 59468535 59468587 -93068672 + MT2B LTR ERVL 535 584 0 6 1038 247 330 0 20 chr5 59468627 59468726 -93068533 + PB1D7 SINE Alu 24 120 0 6 1038 2279 152 24 5 chr5 59468789 59469206 -93068053 - L1_Mur2 LINE L1 -1163 4714 4290 6 1038 708 162 7 7 chr5 59469197 59469340 -93067919 + L1_Mur2 LINE L1 5213 5355 -522 6 1038 244 100 0 0 chr5 59469337 59469387 -93067872 + Lx2 LINE L1 6948 6997 0 6 1038 1422 251 31 69 chr5 59469553 59470134 -93067125 - Lx7 LINE L1 -16 7680 7122 6 1038 893 162 0 0 chr5 59470131 59470279 -93066980 + Lx2 LINE L1 6783 6930 -67 6 1038 871 215 48 0 chr5 59470276 59470366 -93066893 - Lx7 LINE L1 -578 7118 7022 6 1038 1168 22 0 43 chr5 59470366 59470554 -93066705 + (GTTTG)n Simple_repeat Simple_repeat 1 180 0 6 1038 871 215 48 0 chr5 59470554 59470672 -93066587 - Lx7 LINE L1 -675 7021 6901 6 1038 1148 260 82 32 chr5 59470674 59471075 -93066184 - L1_Mur3 LINE L1 -6615 1097 677 6 1038 498 57 0 0 chr5 59471384 59471454 -93065805 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1038 315 191 0 0 chr5 59471645 59471713 -93065546 + T-rich Low_complexity Low_complexity 1 68 0 6 1038 1802 222 25 27 chr5 59472762 59473170 -93064089 - MTD LTR MaLR -11 408 2 6 1038 22 0 0 0 chr5 59473170 59473192 -93064067 + AT_rich Low_complexity Low_complexity 1 22 0 6 1038 1253 235 43 75 chr5 59473359 59473708 -93063551 + ORR1C1 LTR MaLR 37 374 -4 6 1038 28580 93 5 28 chr5 59474865 59476165 -93061094 - L1_Mus2 LINE L1 -2 6564 5315 6 1038 2040 69 93 53 chr5 59476165 59476437 -93060822 - L1_Mus1 LINE L1 0 6567 6307 6 1038 3122 47 37 0 chr5 59476437 59476819 -93060440 - MTA_Mm LTR MaLR 0 396 1 6 1038 7544 71 51 2 chr5 59476819 59477866 -93059393 - MTA_Mm-int LTR MaLR 0 1098 1 6 1038 2970 58 40 0 chr5 59477868 59478247 -93059012 - MTA_Mm LTR MaLR -2 394 1 6 1038 2040 69 93 53 chr5 59478247 59478291 -93058968 - L1_Mus1 LINE L1 -261 6306 6235 6 1038 28580 125 21 34 chr5 59478291 59482906 -93054353 - L1_Mus2 LINE L1 -569 5314 726 6 1038 376 288 15 8 chr5 59482915 59483048 -93054211 - L1_Mus2 LINE L1 -5813 803 670 6 1038 371 253 25 186 chr5 59483085 59483284 -93053975 - L1VL1 LINE L1 -6036 386 220 6 1038 40 59 0 0 chr5 59483390 59483458 -93053801 + AT_rich Low_complexity Low_complexity 1 68 0 6 1038 2912 223 16 63 chr5 59483494 59484245 -93053014 + RMER6D LTR ERVK 1 716 -4 6 1038 23 0 0 0 chr5 59484399 59484422 -93052837 + AT_rich Low_complexity Low_complexity 1 23 0 6 1038 22 35 0 0 chr5 59485684 59485713 -93051546 + AT_rich Low_complexity Low_complexity 1 29 0 6 1038 22 80 0 0 chr5 59485930 59485980 -93051279 + AT_rich Low_complexity Low_complexity 1 50 0 6 1038 330 80 0 0 chr5 59486070 59486120 -93051139 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1038 501 17 0 0 chr5 59486411 59486469 -93050790 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 1038 495 45 0 0 chr5 59486988 59487054 -93050205 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1038 351 0 0 0 chr5 59487054 59487092 -93050167 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1038 4180 163 17 37 chr5 59487109 59487922 -93049337 - Lx3B LINE L1 -4 6969 6173 6 1038 3187 55 3 0 chr5 59487992 59488376 -93048883 + IAPEY_LTR LTR ERVK 1 385 0 6 1038 508 239 30 72 chr5 59488480 59488647 -93048612 - RLTR22_Mus LTR ERVK -2 1320 1161 6 1038 189 0 0 0 chr5 59488659 59488680 -93048579 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1038 882 220 35 103 chr5 59488988 59489298 -93047961 - RLTR22_Mus LTR ERVK -189 1619 1040 6 1038 2194 248 56 40 chr5 59489394 59490141 -93047118 - RLTR22_Mur LTR ERVK -1074 774 16 6 1038 1809 190 72 45 chr5 59491031 59491450 -93045809 + RLTR23 LTR ERV1 1 430 0 6 1038 295 303 146 9 chr5 59491506 59491616 -93045643 - B3A SINE B2 -73 125 1 6 1038 1229 154 60 180 chr5 59492073 59492176 -93045083 + RMER17C LTR ERVK 1 103 -307 6 1038 567 0 0 0 chr5 59492176 59492239 -93045020 + (TTCTC)n Simple_repeat Simple_repeat 2 64 0 6 1038 1229 154 60 180 chr5 59492239 59492601 -93044658 + RMER17C LTR ERVK 104 410 0 6 1038 21 0 0 0 chr5 59492715 59492736 -93044523 + AT_rich Low_complexity Low_complexity 1 21 0 6 1038 21 0 0 0 chr5 59492962 59492983 -93044276 + AT_rich Low_complexity Low_complexity 1 21 0 6 1038 23 0 0 0 chr5 59493093 59493116 -93044143 + AT_rich Low_complexity Low_complexity 1 23 0 6 1038 483 73 0 0 chr5 59493603 59493671 -93043588 + (GA)n Simple_repeat Simple_repeat 2 69 0 6 1038 28 0 0 0 chr5 59494163 59494191 -93043068 + AT_rich Low_complexity Low_complexity 1 28 0 6 1038 25 0 0 0 chr5 59494978 59495003 -93042256 + AT_rich Low_complexity Low_complexity 1 25 0 6 1038 390 108 0 0 chr5 59497220 59497285 -93039974 + (CA)n Simple_repeat Simple_repeat 2 66 0 6 1038 591 85 0 0 chr5 59497820 59497902 -93039357 + (GAAA)n Simple_repeat Simple_repeat 4 85 0 6 1038 1007 147 6 0 chr5 59497903 59498080 -93039179 + GA-rich Low_complexity Low_complexity 3 180 0 6 1038 1375 91 0 5 chr5 59498165 59498352 -93038907 - B2_Mm2 SINE B2 -8 187 2 6 1038 237 159 0 0 chr5 59498865 59498909 -93038350 + GA-rich Low_complexity Low_complexity 2 45 0 6 1038 1339 224 113 12 chr5 59498910 59499236 -93038023 + RLTR16 LTR ERVK 1 359 -146 6 1038 5445 172 52 17 chr5 59500151 59501297 -93035962 + L1_Mur2 LINE L1 3677 4863 -1014 1 1038 879 157 11 11 chr5 59501300 59501480 -93035779 + GA-rich Low_complexity Low_complexity 1 180 0 2 1038 2323 157 147 8 chr5 59501496 59501979 -93035280 + L1_Mur2 LINE L1 4857 5406 -471 1 1038 2498 231 109 71 chr5 59501980 59502713 -93034546 + RMER19B LTR ERVK 1 761 -141 3 1038 1756 272 42 11 chr5 59502723 59503173 -93034086 + Lx5 LINE L1 6557 7020 -30 4 1038 2776 124 67 51 chr5 59503186 59503697 -93033562 + Lx LINE L1 6130 6648 -6 5 1038 23 54 0 0 chr5 59504451 59504488 -93032771 + AT_rich Low_complexity Low_complexity 1 37 0 6 1038 6030 61 4 5 chr5 59505015 59505787 -93031472 - L1Md_F2 LINE L1 -1 6581 5811 7 1038 2260 165 15 90 chr5 59506176 59506641 -93030618 - RLTR23 LTR ERV1 0 430 1 8 1039 1015 233 206 26 chr5 59507013 59507324 -93029935 - ORR1B2 LTR MaLR 0 367 1 9 1039 3877 218 71 6 chr5 59507324 59508269 -93028990 - ORR1B2-int LTR MaLR 0 1509 504 9 1039 1133 181 37 0 chr5 59508259 59508424 -93028835 - ORR1B2-int LTR MaLR -1286 223 58 9 1039 186 43 0 0 chr5 59508424 59508447 -93028812 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1039 1133 181 37 0 chr5 59508447 59508496 -93028763 - ORR1B2-int LTR MaLR -1452 57 2 9 1039 1041 239 39 71 chr5 59508500 59508814 -93028445 - ORR1B2 LTR MaLR -8 359 1 9 1039 222 269 0 0 chr5 59508869 59508936 -93028323 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1039 265 336 109 0 chr5 59509199 59509309 -93027950 + MLT1J LTR MaLR 15 136 -376 1 1039 260 27 27 0 chr5 59509714 59509751 -93027508 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 1 1039 21 57 0 0 chr5 59509808 59509843 -93027416 + AT_rich Low_complexity Low_complexity 1 35 0 1 1039 24 0 0 0 chr5 59509890 59509914 -93027345 + AT_rich Low_complexity Low_complexity 1 24 0 1 1039 24 32 0 0 chr5 59510557 59510588 -93026671 + AT_rich Low_complexity Low_complexity 1 31 0 1 1039 1918 132 3 85 chr5 59510702 59511067 -93026192 - IAPLTR1a_Mm LTR ERVK -2 335 1 1 1039 56981 17 4 8 chr5 59511067 59517565 -93019694 - IAPEz-int LTR ERVK 0 6481 9 1 1039 1918 132 3 85 chr5 59517565 59517930 -93019329 - IAPLTR1a_Mm LTR ERVK -2 335 1 1 1039 614 136 0 8 chr5 59518555 59518688 -93018571 + (TA)n Simple_repeat Simple_repeat 1 132 0 1 1039 228 35 0 0 chr5 59518789 59518818 -93018441 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1039 291 28 0 0 chr5 59519061 59519097 -93018162 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 1039 235 0 0 54 chr5 59519227 59519264 -93017995 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1039 1725 224 70 85 chr5 59519343 59519875 -93017384 - RLTR24 LTR ERV1 -5 524 1 2 1039 224 218 90 0 chr5 59521729 59521807 -93015452 - L2b LINE L2 -2 3424 3303 2 1039 487 335 74 54 chr5 59522197 59522550 -93014709 - MLT1A LTR MaLR -14 360 1 2 1039 6114 173 40 1 chr5 59523220 59524292 -93012967 - MERVL-int LTR ERVL -1066 4419 3306 2 1039 808 139 8 0 chr5 59524277 59524406 -93012853 - MERVL-int LTR ERVL -2404 3081 2952 2 1039 4054 161 31 31 chr5 59524406 59525157 -93012102 + ORR1A2-int LTR MaLR 1213 1963 0 2 1039 2208 123 9 0 chr5 59525157 59525481 -93011778 + ORR1A2 LTR MaLR 1 327 0 2 1039 3447 20 2 0 chr5 59525974 59526369 -93010890 - MTA_Mm LTR MaLR 0 396 1 2 1039 33 0 0 0 chr5 59526635 59526668 -93010591 + AT_rich Low_complexity Low_complexity 1 33 0 2 1039 231 373 92 9 chr5 59528303 59528530 -93008729 + Lx8 LINE L1 7047 7292 -181 2 1039 468 0 0 0 chr5 59528984 59529036 -93008223 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 3 1039 290 172 62 0 chr5 59530687 59530751 -93006508 + RMER15 LTR ERVL 7 74 -501 3 1039 1516 184 147 119 chr5 59530767 59531272 -93005987 - RMER15 LTR ERVL -53 522 4 3 1039 305 330 0 0 chr5 59532018 59532112 -93005147 + A-rich Low_complexity Low_complexity 18 111 0 3 1039 219 203 0 0 chr5 59532123 59532187 -93005072 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1039 237 108 0 0 chr5 59532703 59532740 -93004519 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 3 1039 1304 60 16 42 chr5 59534459 59534650 -93002609 + B2_Mm1t SINE B2 1 186 -7 3 1039 349 294 201 26 chr5 59534991 59535180 -93002079 - MTEb LTR MaLR -143 236 15 3 1039 2190 206 40 24 chr5 59535277 59535774 -93001485 + RLTR16 LTR ERVK 1 505 0 3 1039 591 307 61 27 chr5 59536806 59537329 -92999930 - L1M2 LINE L1 -3393 3452 2906 3 1039 316 334 41 37 chr5 59537537 59537918 -92999341 - L1M2 LINE L1 -4134 2715 2404 3 1039 279 221 0 0 chr5 59539209 59539295 -92997964 + GA-rich Low_complexity Low_complexity 2 87 0 4 1039 849 292 17 13 chr5 59539337 59539573 -92997686 + Lx5 LINE L1 6808 7044 -6 4 1039 260 359 83 12 chr5 59539842 59540011 -92997248 - Tigger5 DNA MER2_type -2163 243 63 4 1039 549 118 114 93 chr5 59540859 59540999 -92996260 + L1_Mus3 LINE L1 6469 6611 -27 4 1039 1326 217 30 89 chr5 59541513 59541949 -92995310 + RMER17C LTR ERVK 1 410 0 4 1039 216 0 0 0 chr5 59542464 59542488 -92994771 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1039 31 68 0 0 chr5 59543219 59543278 -92993981 + AT_rich Low_complexity Low_complexity 1 59 0 4 1039 593 265 29 7 chr5 59543956 59544093 -92993166 + B1_Mur2 SINE Alu 8 147 -2 4 1039 234 0 0 0 chr5 59544511 59544537 -92992722 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1039 525 16 0 0 chr5 59544537 59544599 -92992660 + (CCA)n Simple_repeat Simple_repeat 1 62 0 4 1039 215 315 25 112 chr5 59545469 59545630 -92991629 - B4A SINE B4 -136 156 10 5 1039 22 0 0 0 chr5 59545835 59545857 -92991402 + AT_rich Low_complexity Low_complexity 1 22 0 5 1039 653 284 0 0 chr5 59545916 59546057 -92991202 + B1_Mur2 SINE Alu 8 148 -1 5 1039 345 24 0 0 chr5 59546077 59546119 -92991140 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1039 22 0 0 0 chr5 59548208 59548230 -92989029 + AT_rich Low_complexity Low_complexity 1 22 0 5 1039 524 136 8 0 chr5 59550014 59550139 -92987120 + (TA)n Simple_repeat Simple_repeat 1 126 0 5 1039 661 184 20 121 chr5 59550391 59550589 -92986670 + RMER1C Other Other 1163 1340 -2 5 1039 24 0 0 0 chr5 59550598 59550622 -92986637 + AT_rich Low_complexity Low_complexity 1 24 0 5 1039 771 297 98 91 chr5 59550752 59551678 -92985581 - L1M4c LINE L1 -5433 951 19 5 1039 388 407 17 6 chr5 59551809 59551987 -92985272 + B3A SINE B2 3 182 -16 5 1039 22 0 0 0 chr5 59553462 59553484 -92983775 + AT_rich Low_complexity Low_complexity 1 22 0 6 1039 354 173 0 0 chr5 59553620 59553695 -92983564 + (TA)n Simple_repeat Simple_repeat 2 76 0 6 1039 21 0 0 0 chr5 59553879 59553900 -92983359 + AT_rich Low_complexity Low_complexity 1 21 0 6 1039 284 149 0 0 chr5 59553902 59553949 -92983310 - L1_Mus2 LINE L1 -492 6074 6028 6 1039 3881 63 2 8 chr5 59553949 59554448 -92982811 + L1_Mus2 LINE L1 6071 6566 0 6 1039 263 304 179 29 chr5 59554523 59554696 -92982563 - MLT1A1 LTR MaLR -7 401 203 6 1039 29725 100 16 26 chr5 59555449 59560662 -92976597 + L1Md_F2 LINE L1 423 5586 -297 6 1039 7251 83 4 1 chr5 59560664 59561642 -92975617 + L1Md_F2 LINE L1 5589 6569 -13 6 1039 441 0 0 0 chr5 59561648 59561697 -92975562 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1039 400 309 9 0 chr5 59561732 59561842 -92975417 - ORR1E LTR MaLR -248 111 1 6 1039 221 163 0 0 chr5 59561940 59561983 -92975276 + T-rich Low_complexity Low_complexity 3 45 0 6 1039 189 246 0 0 chr5 59562253 59562318 -92974941 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 1039 819 297 26 81 chr5 59562337 59562586 -92974673 + Lx9 LINE L1 6784 7031 -613 7 1039 2395 190 67 42 chr5 59562586 59563136 -92974123 - RLTR12A LTR ERVK -4 564 1 7 1039 819 297 26 81 chr5 59563136 59563270 -92973989 + Lx9 LINE L1 7032 7146 -498 7 1039 2967 56 10 20 chr5 59563273 59563673 -92973586 + MTA_Mm LTR MaLR 1 396 0 7 1039 1306 244 24 32 chr5 59564593 59564970 -92972289 + ORR1D1 LTR MaLR 1 374 0 7 1039 215 179 0 35 chr5 59565695 59565753 -92971506 + (CATA)n Simple_repeat Simple_repeat 4 59 0 7 1039 23 33 0 0 chr5 59565796 59565826 -92971433 + AT_rich Low_complexity Low_complexity 1 30 0 7 1039 691 320 10 10 chr5 59565888 59566093 -92971166 + Lx8 LINE L1 6197 6401 -1072 7 1039 1664 232 38 35 chr5 59566091 59566719 -92970540 + Lx7 LINE L1 5518 6136 -1560 7 1039 1025 275 8 4 chr5 59566734 59567000 -92970259 + Lx7 LINE L1 6207 6473 -987 7 1039 332 89 0 25 chr5 59567001 59567060 -92970199 - Lx3_Mus LINE L1 -1218 5791 5736 7 1039 25 31 0 0 chr5 59567289 59567321 -92969938 + AT_rich Low_complexity Low_complexity 1 32 0 7 1039 1492 98 0 0 chr5 59567453 59567667 -92969592 - L1_Mus2 LINE L1 0 6566 6353 8 1039 1819 64 13 0 chr5 59567668 59567902 -92969357 + L1_Mus2 LINE L1 6091 6327 -239 8 1039 8919 94 6 1 chr5 59567900 59569164 -92968095 - L1_Mur1 LINE L1 -87 5799 4529 8 1039 4779 107 7 5 chr5 59569160 59569906 -92967353 + L1_Mur1 LINE L1 3800 4546 -1340 8 1039 387 270 45 0 chr5 59570049 59570160 -92967099 - PB1D9 SINE Alu 0 120 5 8 1039 1613 54 5 0 chr5 59570416 59570621 -92966638 + L1Md_T LINE L1 6372 6577 -5 8 1039 22 0 0 0 chr5 59571008 59571030 -92966229 + AT_rich Low_complexity Low_complexity 1 22 0 8 1039 214 64 0 78 chr5 59571130 59571181 -92966078 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 8 1039 2052 287 45 16 chr5 59571291 59571931 -92965328 + Lx6 LINE L1 5889 6547 -913 8 1039 670 64 0 0 chr5 59571931 59572025 -92965234 + L1_Mus1 LINE L1 6463 6556 -11 8 1039 896 234 146 7 chr5 59572278 59572473 -92964786 + Lx6 LINE L1 6535 6756 -704 8 1039 524 0 53 0 chr5 59572473 59572549 -92964710 + (TA)n Simple_repeat Simple_repeat 1 80 0 8 1039 896 234 146 7 chr5 59572549 59572628 -92964631 + Lx6 LINE L1 6757 6846 -614 8 1039 2828 36 0 3 chr5 59572629 59572967 -92964292 - IAPLTR1a_Mm LTR ERVK 0 337 1 8 1039 7224 29 2 8 chr5 59572967 59573824 -92963435 - IAPEz-int LTR ERVK 0 6481 5630 8 1039 24735 28 31 13 chr5 59573810 59576795 -92960464 - IAPEz-int LTR ERVK -3405 3076 38 8 1039 450 260 164 23 chr5 59576796 59576808 -92960451 + Lx6 LINE L1 6833 6842 -618 8 1039 2816 39 0 3 chr5 59576808 59577146 -92960113 - IAPLTR1a_Mm LTR ERVK 0 337 1 9 1039 450 260 164 23 chr5 59577146 59577186 -92960073 + Lx6 LINE L1 6843 6882 -578 8 1039 396 0 0 0 chr5 59577186 59577230 -92960029 + (GA)n Simple_repeat Simple_repeat 2 45 0 9 1039 450 260 164 23 chr5 59577230 59577353 -92959906 + Lx6 LINE L1 6883 7033 -427 8 1039 6776 109 8 2 chr5 59577351 59578710 -92958549 + L1_Mus4 LINE L1 5168 6534 -102 9 1039 660 224 22 0 chr5 59578701 59578880 -92958379 - L1_Mur3 LINE L1 -6389 1323 1141 9 1039 836 320 98 3 chr5 59578883 59579190 -92958069 + Lx6 LINE L1 7105 7440 -20 8 1039 237 384 73 30 chr5 59579730 59579894 -92957365 + B4A SINE B4 97 267 -25 9 1039 315 0 0 0 chr5 59579951 59579986 -92957273 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1039 207 0 0 0 chr5 59581659 59581682 -92955577 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1039 373 276 133 33 chr5 59582094 59582214 -92955045 + B4A SINE B4 161 292 0 9 1039 560 122 24 8 chr5 59582324 59582448 -92954811 + GA-rich Low_complexity Low_complexity 2 127 0 9 1039 180 0 0 0 chr5 59582898 59582918 -92954341 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1039 21 0 0 0 chr5 59583082 59583103 -92954156 + AT_rich Low_complexity Low_complexity 1 21 0 1 1039 333 0 0 0 chr5 59583350 59583387 -92953872 + (ATG)n Simple_repeat Simple_repeat 3 39 0 1 1039 669 319 90 37 chr5 59583533 59583989 -92953270 + L1_Mur3 LINE L1 51 530 -7198 1 1039 801 213 130 26 chr5 59584012 59584320 -92952939 + L1_Mur3 LINE L1 860 1199 -6529 1 1039 12021 137 34 20 chr5 59584413 59587258 -92950001 + L1VL1 LINE L1 194 3079 -619 1 1039 4782 152 43 13 chr5 59587275 59588140 -92949119 - RMER17A2 LTR ERVK -12 894 4 1 1039 13865 130 17 110 chr5 59588145 59589508 -92947751 + L1_Mus3 LINE L1 3292 4398 -1485 1 1039 2884 36 2 149 chr5 59589508 59589965 -92947294 - RLTR10 LTR ERVK 0 390 1 1 1039 13865 115 12 66 chr5 59589965 59592213 -92945046 + L1_Mus3 LINE L1 4399 6633 -5 1 1039 398 122 0 0 chr5 59592215 59592289 -92944970 + L1_Mur3 LINE L1 1197 1270 -6458 1 1039 764 123 0 0 chr5 59592292 59592406 -92944853 + B1_Mus1 SINE Alu 1 114 -34 1 1039 258 183 17 0 chr5 59592406 59592466 -92944793 + L1_Mur3 LINE L1 1261 1321 -4556 1 1039 547 249 102 45 chr5 59592459 59592724 -92944535 + L1_Mur3 LINE L1 2471 2750 -3130 1 1039 217 196 0 35 chr5 59592736 59592794 -92944465 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 1 1039 305 242 0 0 chr5 59592796 59592862 -92944397 + L1_Mur3 LINE L1 2744 2809 -3071 1 1039 811 299 108 11 chr5 59593385 59593662 -92943597 - ORR1D2 LTR MaLR 0 370 67 1 1039 220 215 15 44 chr5 59594100 59594168 -92943091 + GA-rich Low_complexity Low_complexity 3 68 0 1 1039 205 331 27 19 chr5 59594230 59594350 -92942909 + MIRb SINE MIR 59 176 -92 1 1039 2298 212 101 45 chr5 59594800 59595352 -92941907 + RMER20B LTR ERVK 1 583 -44 1 1039 1132 228 91 31 chr5 59595456 59595977 -92941282 + RMER6C LTR ERVK 1 678 -12 1 1039 2449 201 70 92 chr5 59595989 59596670 -92940589 + RMER6-int LTR ERVK 1 666 -2511 1 1039 3648 48 52 0 chr5 59596688 59597145 -92940114 + L1Md_F2 LINE L1 6004 6484 -98 1 1039 2577 157 99 23 chr5 59597178 59597861 -92939398 + RMER6-int LTR ERVK 658 1392 -1785 1 1039 396 196 147 0 chr5 59598244 59598346 -92938913 - Lx LINE L1 -4 6650 6534 1 1039 783 179 12 6 chr5 59598346 59598509 -92938750 - RMER17A2 LTR ERVK 0 906 743 1 1039 1967 170 18 3 chr5 59598512 59598848 -92938411 - Lx LINE L1 -186 6468 6128 1 1039 252 59 0 0 chr5 59599894 59599928 -92937331 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1039 252 0 0 0 chr5 59600185 59600213 -92937046 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1 1039 511 288 158 35 chr5 59600367 59600626 -92936633 + MLT1B LTR MaLR 87 377 -13 1 1039 414 153 35 12 chr5 59600783 59600869 -92936390 - Lx9 LINE L1 -12 7632 7545 1 1039 2109 123 3 3 chr5 59600998 59601317 -92935942 - ORR1A2 LTR MaLR -8 319 1 1 1039 810 31 0 0 chr5 59602786 59602883 -92934376 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 1 1039 2989 187 41 30 chr5 59603166 59603843 -92933416 + RMER6C LTR ERVK 6 690 0 1 1039 21 57 0 0 chr5 59603875 59603910 -92933349 + AT_rich Low_complexity Low_complexity 1 35 0 1 1039 23 78 0 0 chr5 59603916 59603967 -92933292 + AT_rich Low_complexity Low_complexity 1 51 0 1 1039 317 117 17 0 chr5 59604675 59604735 -92932524 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1039 624 209 94 26 chr5 59605078 59605271 -92931988 + Lx6 LINE L1 7031 7222 -238 1 1039 24 77 0 0 chr5 59605306 59605358 -92931901 + AT_rich Low_complexity Low_complexity 1 52 0 1 1039 540 106 0 0 chr5 59605389 59605474 -92931785 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1039 201 74 0 0 chr5 59605634 59605661 -92931598 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1039 4047 55 2 4 chr5 59605671 59606182 -92931077 - L1Md_F2 LINE L1 -12 6570 6061 1 1039 918 37 0 0 chr5 59606184 59606291 -92930968 - U6 snRNA snRNA 0 107 1 1 1039 37590 44 0 3 chr5 59606305 59612499 -92924760 - L1Md_T LINE L1 0 6585 312 1 1039 21 0 0 0 chr5 59614290 59614311 -92922948 + AT_rich Low_complexity Low_complexity 1 21 0 1 1039 189 175 0 0 chr5 59614560 59614600 -92922659 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 1 1039 468 62 0 0 chr5 59614661 59614725 -92922534 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1039 1357 87 0 0 chr5 59615029 59615214 -92922045 - MURVY-LTR LTR ERV1 0 519 335 1 1039 2741 96 3 10 chr5 59615214 59615604 -92921655 - L1Md_F2 LINE L1 -12 6570 6184 1 1039 1920 65 73 0 chr5 59615604 59615865 -92921394 + L1Md_F2 LINE L1 5881 6160 -422 1 1039 2205 55 0 166 chr5 59615865 59616282 -92920977 - MURVY-LTR LTR ERV1 -171 348 1 1 1039 444 419 0 0 chr5 59616298 59616453 -92920806 + B4 SINE B4 49 203 -89 1 1039 956 84 14 7 chr5 59616530 59616673 -92920586 - Lx3A LINE L1 -1028 5953 5810 1 1039 3719 146 13 16 chr5 59616673 59617301 -92919958 + Lx3A LINE L1 6346 6971 -10 1 1039 216 97 0 0 chr5 59617301 59617332 -92919927 + (TTAG)n Simple_repeat Simple_repeat 2 32 0 1 1039 425 275 88 51 chr5 59617375 59617717 -92919542 - L1_Mur3 LINE L1 -2120 4023 3684 1 1039 908 130 6 0 chr5 59617717 59617878 -92919381 + (TTCC)n Simple_repeat Simple_repeat 3 164 0 1 1039 327 319 51 79 chr5 59617878 59617967 -92919292 - L1_Mur3 LINE L1 -2456 3687 3604 1 1039 25 51 0 0 chr5 59618608 59618647 -92918612 + AT_rich Low_complexity Low_complexity 1 39 0 1 1039 27 29 0 0 chr5 59619025 59619059 -92918200 + AT_rich Low_complexity Low_complexity 1 34 0 1 1039 23 0 0 0 chr5 59620014 59620037 -92917222 + AT_rich Low_complexity Low_complexity 1 23 0 1 1039 21 0 0 0 chr5 59620450 59620471 -92916788 + AT_rich Low_complexity Low_complexity 1 21 0 1 1039 22 0 0 0 chr5 59621258 59621280 -92915979 + AT_rich Low_complexity Low_complexity 1 22 0 1 1039 210 193 0 0 chr5 59621428 59621485 -92915774 + T-rich Low_complexity Low_complexity 1 57 0 1 1039 879 197 30 66 chr5 59621540 59621844 -92915415 - MYSERV6-int LTR ERVK -893 8066 7774 1 1039 210 132 0 50 chr5 59621930 59621970 -92915289 + A-rich Low_complexity Low_complexity 3 40 0 1 1039 426 70 11 44 chr5 59622198 59622288 -92914971 + (CAAAAA)n Simple_repeat Simple_repeat 4 90 0 1 1039 630 0 0 0 chr5 59622622 59622692 -92914567 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1 1039 644 237 105 0 chr5 59622719 59622871 -92914388 - Lx5 LINE L1 -104 6946 6779 1 1039 785 302 108 42 chr5 59622926 59623334 -92913925 + Lx8 LINE L1 6683 7117 -356 1 1039 721 367 87 26 chr5 59623331 59623938 -92913321 + Lx8 LINE L1 6824 7467 -6 1 1039 229 276 83 28 chr5 59624819 59624927 -92912332 - MLT1A1 LTR MaLR -294 114 1 1 1039 194 105 26 0 chr5 59625240 59625278 -92911981 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1 1039 241 366 56 69 chr5 59625357 59625452 -92911807 + B1F SINE Alu 7 95 -54 1 1039 1024 71 35 7 chr5 59625452 59625594 -92911665 - B1_Mus1 SINE Alu 0 148 3 1 1039 241 366 56 69 chr5 59625594 59625642 -92911617 + B1F SINE Alu 96 148 -1 1 1039 315 0 0 0 chr5 59626859 59626894 -92910365 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1039 223 129 30 61 chr5 59627119 59627185 -92910074 + T-rich Low_complexity Low_complexity 4 67 0 1 1039 1510 190 41 23 chr5 59627191 59627585 -92909674 - RMER17C LTR ERVK -2 408 8 1 1039 276 264 0 32 chr5 59627601 59627695 -92909564 + (CA)n Simple_repeat Simple_repeat 2 92 0 1 1039 1692 161 52 52 chr5 59627820 59628206 -92909053 - LTRIS4 LTR ERV1 0 507 122 1 1039 260 50 0 24 chr5 59628214 59628255 -92909004 - MuRRS4-int LTR ERV1 0 5063 5024 1 1039 1351 276 68 10 chr5 59628522 59628931 -92908328 - Lx6 LINE L1 -12 7448 7016 1 1039 379 285 87 46 chr5 59628950 59629123 -92908136 - RLTR41 LTR ERV1 -2 444 265 1 1039 373 231 202 0 chr5 59629667 59629771 -92907488 + RMER20A LTR ERVK 336 460 -56 1 1039 207 49 73 0 chr5 59629942 59629983 -92907276 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1039 321 26 0 0 chr5 59629987 59630025 -92907234 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1 1039 1095 142 5 28 chr5 59630025 59630242 -92907017 - Lx LINE L1 -15 6639 6428 1 1039 251 93 23 0 chr5 59631296 59631339 -92905920 + (TTTTC)n Simple_repeat Simple_repeat 5 48 0 1 1039 495 0 0 0 chr5 59631862 59631917 -92905342 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1039 380 319 93 59 chr5 59631952 59632222 -92905037 + MERVK26-int LTR ERVK 6223 6501 -418 1 1039 1571 178 87 38 chr5 59632284 59632483 -92904776 + RMER17C LTR ERVK 1 222 -188 1 1039 387 0 0 0 chr5 59632483 59632526 -92904733 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1039 1571 178 87 38 chr5 59632526 59632717 -92904542 + RMER17C LTR ERVK 223 410 0 1 1039 402 338 18 31 chr5 59632821 59633050 -92904209 + MERVK26-int LTR ERVK 6691 6916 -3 1 1039 552 220 3 20 chr5 59633061 59633187 -92904072 + RMER20A LTR ERVK 11 135 -492 1 1039 389 277 0 15 chr5 59633206 59633338 -92903921 - Lx9 LINE L1 -40 7604 7475 1 1039 21 36 0 0 chr5 59633363 59633391 -92903868 + AT_rich Low_complexity Low_complexity 1 28 0 1 1039 400 292 62 62 chr5 59634750 59634896 -92902363 + ORR1E LTR MaLR 208 353 -6 1 1039 501 308 89 22 chr5 59634935 59635204 -92902055 - Lx8 LINE L1 -8 7465 7179 1 1039 1152 75 0 0 chr5 59635414 59635561 -92901698 + B1_Mm SINE Alu 1 147 0 1 1039 198 103 0 0 chr5 59635570 59635599 -92901660 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1039 4430 157 99 6 chr5 59635605 59636890 -92900369 - L1_Mus4 LINE L1 -440 6196 4737 1 1039 1365 185 75 13 chr5 59636888 59637261 -92899998 - L1_Mus4 LINE L1 -1378 4502 4107 1 1039 248 271 176 24 chr5 59637270 59637395 -92899864 - CYRA11_Mm Unknown Y-chromosome -233 384 241 1 1039 544 195 9 0 chr5 59637318 59637430 -92899829 + URR1B DNA MER1_type 83 195 -30 1 1039 927 207 9 60 chr5 59637430 59637646 -92899613 - RMER6B LTR ERVK 0 461 257 1 129 329 163 239 0 chr5 59637676 59637768 -92899491 - RMER6B LTR ERVK -347 114 1 1 1040 1674 195 10 27 chr5 59637862 59638263 -92898996 - L1_Mus4 LINE L1 -1771 4109 3716 1 1040 364 330 67 11 chr5 59638556 59638841 -92898418 - L1_Mus4 LINE L1 -3982 1898 1598 1 1040 186 128 0 0 chr5 59639672 59639711 -92897548 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1040 1964 182 25 6 chr5 59639790 59640143 -92897116 - Lx5 LINE L1 -544 6506 6147 1 1040 28 29 0 0 chr5 59641421 59641456 -92895803 + AT_rich Low_complexity Low_complexity 1 35 0 1 1040 248 264 112 62 chr5 59642412 59642654 -92894605 - Lx7 LINE L1 0 7696 7443 1 1040 2252 234 61 15 chr5 59642594 59642727 -92894532 + Lx6 LINE L1 5251 5385 -495 1 1040 486 0 0 0 chr5 59642727 59642781 -92894478 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1040 2335 243 88 19 chr5 59642781 59643724 -92893535 + Lx6 LINE L1 5386 6432 -1028 1 1040 519 100 0 57 chr5 59643724 59643830 -92893429 + L1_Mus4 LINE L1 6526 6625 -11 1 1040 240 320 85 17 chr5 59644194 59644429 -92892830 - L1MA6 LINE L1 -371 5929 5679 1 1040 6683 25 0 0 chr5 59644463 59645248 -92892011 - L1Md_T LINE L1 -82 5801 5017 1 1040 5988 40 0 0 chr5 59645248 59645965 -92891294 + L1Md_T LINE L1 5866 6582 0 1 1040 239 305 0 10 chr5 59646071 59646167 -92891092 - L1M1 LINE L1 -831 5469 5375 1 1040 403 108 15 0 chr5 59646170 59646235 -92891024 - ORR1A3 LTR MaLR -8 318 253 1 1040 37991 41 4 6 chr5 59646366 59652551 -92884708 - L1Md_T LINE L1 0 6582 414 2 1040 276 0 68 0 chr5 59652581 59652625 -92884634 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 1040 382 338 41 7 chr5 59652674 59652820 -92884439 - Lx7 LINE L1 -523 7173 7023 2 1040 21 0 0 0 chr5 59654178 59654199 -92883060 + AT_rich Low_complexity Low_complexity 1 21 0 2 1040 429 83 0 0 chr5 59654517 59654577 -92882682 - L1_Mus1 LINE L1 -247 6320 6261 2 1040 650 33 11 0 chr5 59654578 59654670 -92882589 + L1_Mus2 LINE L1 6473 6565 -1 2 1040 997 39 0 15 chr5 59654822 59654954 -92882305 - L1_Mus1 LINE L1 0 6567 6438 2 1040 2591 39 2 239 chr5 59655559 59656070 -92881189 - RLTR10 LTR ERVK 0 390 1 2 1040 6326 32 0 0 chr5 59656720 59657463 -92879796 + L1Md_T LINE L1 5839 6581 -1 2 1040 252 122 0 0 chr5 59658823 59658864 -92878395 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1040 519 17 0 0 chr5 59659027 59659087 -92878172 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1040 234 286 32 0 chr5 59659381 59659444 -92877815 + Lx8 LINE L1 7024 7088 -385 2 1040 351 0 0 0 chr5 59659619 59659658 -92877601 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1040 1193 69 0 6 chr5 59659772 59659946 -92877313 + (GA)n Simple_repeat Simple_repeat 2 174 0 2 1040 356 0 23 0 chr5 59661096 59661140 -92876119 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 1040 21 71 0 0 chr5 59661449 59661491 -92875768 + AT_rich Low_complexity Low_complexity 1 42 0 2 1040 21 0 0 0 chr5 59661652 59661673 -92875586 + AT_rich Low_complexity Low_complexity 1 21 0 2 1040 21 0 0 0 chr5 59662492 59662513 -92874746 + AT_rich Low_complexity Low_complexity 1 21 0 2 1040 1718 211 36 43 chr5 59663088 59663482 -92873777 - ORR1B1 LTR MaLR -4 390 1 2 1040 212 122 41 0 chr5 59663927 59663976 -92873283 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 2 1040 205 162 0 0 chr5 59663984 59664021 -92873238 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1040 1543 155 4 4 chr5 59664175 59664427 -92872832 + L1VL1 LINE L1 15 266 -6156 2 1040 1449 172 84 4 chr5 59664427 59664701 -92872558 + L1Md_F LINE L1 277 572 -6044 2 1040 1020 107 7 12 chr5 59664701 59664888 -92872371 + L1Md_F LINE L1 1176 1370 -4513 2 1040 467 18 0 0 chr5 59664864 59664919 -92872340 - L1_Mm LINE L1 -453 5430 5376 2 1040 2793 106 45 2 chr5 59664922 59665034 -92872225 + L1Md_F2 LINE L1 5121 5234 -649 2 1040 540 0 0 0 chr5 59665034 59665094 -92872165 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1040 2793 106 45 2 chr5 59665094 59665427 -92871832 + L1Md_F2 LINE L1 5235 5583 -300 2 1040 7396 78 6 9 chr5 59665428 59666415 -92870844 + L1Md_F2 LINE L1 5587 6570 -12 2 1040 504 280 53 6 chr5 59666621 59666790 -92870469 + Lx6 LINE L1 7246 7422 -38 2 1040 919 222 131 4 chr5 59666793 59667060 -92870199 - L1_Mur2 LINE L1 -603 5274 4974 2 1040 1245 231 24 151 chr5 59667061 59667524 -92869735 + Lx4B LINE L1 6111 6514 -544 2 1040 324 0 0 0 chr5 59668279 59668315 -92868944 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1040 357 24 0 0 chr5 59668418 59668460 -92868799 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1040 242 299 94 80 chr5 59668629 59668767 -92868492 + B1F2 SINE Alu 10 150 0 2 1040 45 75 0 0 chr5 59668994 59669088 -92868171 + AT_rich Low_complexity Low_complexity 1 94 0 2 1040 1126 81 0 7 chr5 59669170 59669319 -92867940 - B1_Mus1 SINE Alu 0 148 1 2 1040 22 0 0 0 chr5 59670845 59670867 -92866392 + AT_rich Low_complexity Low_complexity 1 22 0 2 1040 465 19 0 0 chr5 59671125 59671179 -92866080 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1040 423 191 30 50 chr5 59671515 59671614 -92865645 + RMER6C LTR ERVK 24 120 -570 2 1040 294 264 74 60 chr5 59671619 59671768 -92865491 + RLTR22_Mur LTR ERVK 3 153 -1695 2 1040 2009 255 71 87 chr5 59672808 59673690 -92863569 + RLTR22_Mur LTR ERVK 126 993 -855 2 1040 1417 208 34 62 chr5 59673707 59673938 -92863321 - L1VL4 LINE L1 -5437 865 637 2 1040 231 36 0 0 chr5 59673938 59673966 -92863293 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1040 1032 96 0 0 chr5 59673966 59674101 -92863158 - B1_Mus2 SINE Alu -8 139 5 2 1040 1417 208 34 62 chr5 59674101 59674284 -92862975 - L1VL4 LINE L1 -5666 636 463 2 1040 599 285 36 0 chr5 59674353 59674518 -92862741 - ORR1D1-int LTR MaLR -1183 187 17 2 1040 815 293 176 3 chr5 59674534 59674846 -92862413 - ORR1D1 LTR MaLR -8 366 1 2 1040 288 266 63 11 chr5 59674846 59674941 -92862318 + Lx9 LINE L1 6697 6796 -848 2 1040 408 293 37 78 chr5 59674952 59675196 -92862063 + Lx9 LINE L1 6946 7179 -465 2 1040 27 49 0 0 chr5 59675255 59675296 -92861963 + AT_rich Low_complexity Low_complexity 1 41 0 2 1040 387 0 0 0 chr5 59675476 59675519 -92861740 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1040 242 317 6 82 chr5 59675560 59675718 -92861541 + B1F2 SINE Alu 3 148 -1 2 1040 735 71 0 0 chr5 59675773 59675871 -92861388 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 1040 23 0 0 0 chr5 59676037 59676060 -92861199 + AT_rich Low_complexity Low_complexity 1 23 0 2 1040 6454 61 2 4 chr5 59676358 59677193 -92860066 - L1Md_F2 LINE L1 0 6582 5749 2 1040 23 68 0 0 chr5 59677231 59677275 -92859984 + AT_rich Low_complexity Low_complexity 1 44 0 2 1040 206 301 0 0 chr5 59678126 59678199 -92859060 + T-rich Low_complexity Low_complexity 1 73 0 2 1040 25 51 0 0 chr5 59678385 59678424 -92858835 + AT_rich Low_complexity Low_complexity 1 39 0 2 1040 27 0 0 0 chr5 59678709 59678736 -92858523 + AT_rich Low_complexity Low_complexity 1 27 0 2 1040 41 66 0 0 chr5 59678794 59678870 -92858389 + AT_rich Low_complexity Low_complexity 1 76 0 2 1040 1791 220 34 32 chr5 59678897 59679351 -92857908 - Lx3C LINE L1 -96 6880 6155 2 1040 784 219 155 40 chr5 59679412 59679716 -92857543 - Lx9 LINE L1 -1 7643 7305 2 1040 371 104 0 95 chr5 59679948 59680022 -92857237 + L1Md_F3 LINE L1 6511 6577 -7 2 1040 414 379 99 8 chr5 59680022 59680275 -92856984 - MTD LTR MaLR -14 405 130 2 1040 2025 228 35 37 chr5 59680327 59680740 -92856519 + RMER19C LTR ERVK 1 435 -302 2 1040 445 126 84 0 chr5 59680740 59680835 -92856424 + Lx2 LINE L1 6885 6987 -10 2 1040 2025 171 8 59 chr5 59680835 59681168 -92856091 + RMER19C LTR ERVK 287 611 0 2 1040 228 311 19 0 chr5 59682705 59682808 -92854451 + (TA)n Simple_repeat Simple_repeat 2 106 0 2 1040 482 297 71 82 chr5 59682817 59683051 -92854208 - MERVL_2A-int LTR ERVL -202 5559 5336 2 1040 3243 45 2 5 chr5 59683051 59683448 -92853811 - MTA_Mm LTR MaLR 0 396 1 2 1040 482 332 52 47 chr5 59683448 59683734 -92853525 - MERVL_2A-int LTR ERVL -426 5335 4964 2 1040 426 285 30 15 chr5 59683789 59683921 -92853338 - MERVL_2A-int LTR ERVL -769 4992 4859 2 1040 583 357 36 23 chr5 59683943 59684247 -92853012 - MTE-int LTR MaLR -1146 434 127 2 1040 22 35 0 0 chr5 59685346 59685375 -92851884 + AT_rich Low_complexity Low_complexity 1 29 0 2 1040 2985 74 179 2 chr5 59686895 59687330 -92849929 - RLTR1B LTR ERV1 0 512 1 2 1040 524 15 0 15 chr5 59687492 59687558 -92849701 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 2 1040 1422 45 0 0 chr5 59687564 59687742 -92849517 + (GA)n Simple_repeat Simple_repeat 1 178 0 2 1040 684 67 0 0 chr5 59687744 59687834 -92849425 + (GAAA)n Simple_repeat Simple_repeat 1 90 0 2 1040 554 287 105 19 chr5 59687835 59688101 -92849158 + Lx2B LINE L1 6712 7000 0 2 1040 381 295 114 15 chr5 59688111 59688242 -92849017 + B4A SINE B4 81 224 -68 2 1040 477 34 0 0 chr5 59688371 59688430 -92848829 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1040 621 310 140 60 chr5 59689217 59689422 -92847837 - MTD LTR MaLR 0 419 179 2 1040 2276 97 15 142 chr5 59689422 59689893 -92847366 - RLTR9F LTR ERVK -4 411 1 2 1040 621 310 140 60 chr5 59689893 59690037 -92847222 - MTD LTR MaLR -241 178 42 2 1040 1077 311 126 48 chr5 59690079 59690853 -92846406 - MTD-int LTR MaLR -426 1537 605 2 1040 4032 212 44 24 chr5 59690867 59691820 -92845439 + Lx4B LINE L1 6057 7028 -30 2 1040 371 312 55 71 chr5 59691870 59692027 -92845232 - MTD-int LTR MaLR -1007 251 99 2 1040 198 0 0 0 chr5 59692027 59692049 -92845210 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 1040 371 312 55 71 chr5 59692049 59692146 -92845113 - MTD-int LTR MaLR -1160 98 1 2 1040 863 306 109 20 chr5 59692146 59692503 -92844756 - MTD LTR MaLR 0 419 31 2 1040 411 21 0 0 chr5 59693342 59693390 -92843869 + (TATAA)n Simple_repeat Simple_repeat 5 52 0 2 1040 27 0 0 0 chr5 59693626 59693653 -92843606 + AT_rich Low_complexity Low_complexity 1 27 0 2 1040 1740 177 46 6 chr5 59693704 59694033 -92843226 - Lx4A LINE L1 -17 7041 6700 2 1040 4614 135 9 5 chr5 59694033 59694769 -92842490 + L1_Mur2 LINE L1 5090 5828 -49 2 1040 260 277 33 157 chr5 59694788 59695004 -92842255 - MTE-int LTR MaLR -516 1064 879 2 1040 981 246 103 27 chr5 59695047 59695377 -92841882 + Lx6 LINE L1 7079 7433 -27 2 1040 240 333 92 15 chr5 59695559 59695690 -92841569 + L2a LINE L2 3205 3345 -81 2 1040 398 69 17 0 chr5 59695988 59696046 -92841213 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 2 1040 203 88 0 29 chr5 59696965 59697000 -92840259 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 1040 808 340 77 3 chr5 59697012 59697378 -92839881 - Lx8 LINE L1 -15 7458 7066 2 1040 752 59 0 10 chr5 59698174 59698277 -92838982 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 2 1040 1993 159 24 11 chr5 59698281 59698663 -92838596 - Lx2B LINE L1 -10 6990 6604 2 1040 4003 163 24 83 chr5 59698663 59699068 -92838191 - L1_Mur1 LINE L1 -811 5075 4743 2 1040 225 0 0 0 chr5 59699068 59699093 -92838166 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1040 4003 163 24 83 chr5 59699093 59699183 -92838076 - L1_Mur1 LINE L1 -1144 4742 4646 2 1040 240 35 0 0 chr5 59699183 59699212 -92838047 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1040 4003 163 24 83 chr5 59699212 59699639 -92837620 - L1_Mur1 LINE L1 -1241 4645 4211 2 1040 1344 174 23 63 chr5 59699638 59699938 -92837321 + L1_Mur2 LINE L1 3662 3949 -1928 2 1040 28 61 0 0 chr5 59700841 59700890 -92836369 + AT_rich Low_complexity Low_complexity 1 49 0 2 1040 904 304 29 22 chr5 59701055 59701327 -92835932 + ORR1D2 LTR MaLR 97 370 0 2 1040 606 312 65 21 chr5 59701426 59701883 -92835376 + L1_Mur2 LINE L1 4878 5306 -580 2 1040 38160 7 0 0 chr5 59701883 59707255 -92830004 + L1Md_A LINE L1 214 5586 -297 2 1040 8921 5 0 0 chr5 59707255 59708250 -92829009 + L1Md_A LINE L1 5587 6581 -1 2 1040 234 0 0 0 chr5 59710239 59710265 -92826994 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 2 1040 399 65 0 12 chr5 59710922 59710994 -92826265 + B1_Mur4 SINE Alu 81 150 0 2 1040 1078 113 0 29 chr5 59711031 59711204 -92826055 - L1_Mus2 LINE L1 -26 6540 6373 2 1040 1051 286 85 49 chr5 59711756 59712146 -92825113 - MTD LTR MaLR -15 404 1 2 1040 438 221 47 39 chr5 59712271 59712398 -92824861 - RMER1C Other Other -15 1327 1200 3 1040 321 89 0 0 chr5 59712402 59712447 -92824812 + (GGA)n Simple_repeat Simple_repeat 2 46 0 3 1040 1371 62 0 0 chr5 59712448 59712626 -92824633 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 3 1040 2545 278 44 52 chr5 59712663 59713483 -92823776 - RMER1C Other Other -140 1202 390 3 1040 631 333 101 66 chr5 59713531 59714091 -92823168 - MTC-int LTR MaLR -244 1014 336 3 1040 683 322 93 24 chr5 59714425 59714773 -92822486 - MTD LTR MaLR -31 388 12 3 1040 189 0 0 0 chr5 59716038 59716059 -92821200 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1040 355 180 104 24 chr5 59716417 59716542 -92820717 + Lx9 LINE L1 7509 7643 -1 3 1040 549 0 0 0 chr5 59716779 59716840 -92820419 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 1040 27 29 0 0 chr5 59718131 59718165 -92819094 + AT_rich Low_complexity Low_complexity 1 34 0 3 1040 576 42 0 0 chr5 59718338 59718409 -92818850 + (TAAA)n Simple_repeat Simple_repeat 3 73 0 3 1040 245 128 0 21 chr5 59719442 59719490 -92817769 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1040 25 0 0 0 chr5 59719874 59719899 -92817360 + AT_rich Low_complexity Low_complexity 1 25 0 3 1040 22 0 0 0 chr5 59720076 59720098 -92817161 + AT_rich Low_complexity Low_complexity 1 22 0 3 1040 22 35 0 0 chr5 59720640 59720669 -92816590 + AT_rich Low_complexity Low_complexity 1 29 0 3 1040 531 0 0 0 chr5 59720970 59721029 -92816230 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1040 1666 71 24 29 chr5 59721541 59721787 -92815472 + L1Md_F2 LINE L1 6326 6570 -12 3 1040 188 35 35 0 chr5 59721794 59721823 -92815436 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 3 1040 30 0 0 0 chr5 59722165 59722195 -92815064 + AT_rich Low_complexity Low_complexity 1 30 0 3 1040 314 304 57 57 chr5 59724183 59724305 -92812954 - B4A SINE B4 -21 271 150 3 1040 228 67 0 0 chr5 59725635 59725665 -92811594 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 3 1040 1030 90 26 0 chr5 59725665 59725796 -92811463 - B2_Mm1t SINE B2 -33 160 29 3 1040 4516 48 5 0 chr5 59725796 59726358 -92810901 - L1Md_F2 LINE L1 -2 6580 6016 3 1040 1030 90 26 0 chr5 59726358 59726382 -92810877 - B2_Mm1t SINE B2 -165 28 2 3 1040 238 321 64 45 chr5 59726867 59727131 -92810128 - Lx9 LINE L1 -130 7514 7246 3 1040 1331 347 48 35 chr5 59727153 59728058 -92809201 - Lx9 LINE L1 -478 7166 6251 3 1040 193 49 47 47 chr5 59728098 59728141 -92809118 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3 1040 397 327 6 6 chr5 59728408 59728568 -92808691 - Lx5 LINE L1 -1128 5922 5763 3 1040 378 0 0 0 chr5 59728571 59728613 -92808646 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 1040 672 302 47 25 chr5 59728738 59729060 -92808199 + L1_Mur3 LINE L1 5221 5549 -331 3 1040 236 111 22 0 chr5 59729105 59729150 -92808109 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 3 1040 25 0 0 0 chr5 59729397 59729422 -92807837 + AT_rich Low_complexity Low_complexity 1 25 0 3 1040 1302 296 118 12 chr5 59729823 59730306 -92806953 + Lx6 LINE L1 6815 7348 -112 3 1040 277 213 9 9 chr5 59730541 59730650 -92806609 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 1040 602 326 56 51 chr5 59732307 59732718 -92804541 - L1MA9 LINE L1 -76 6236 5824 3 1040 315 0 0 0 chr5 59733658 59733693 -92803566 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1040 411 21 0 0 chr5 59733717 59733765 -92803494 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1040 303 71 0 0 chr5 59733780 59733822 -92803437 + (CAGAGA)n Simple_repeat Simple_repeat 2 43 0 3 1040 494 16 0 16 chr5 59734095 59734159 -92803100 + (CTAAA)n Simple_repeat Simple_repeat 2 64 0 3 1040 8734 14 2 3 chr5 59734219 59735239 -92802020 - L1Md_A LINE L1 -1006 4877 3859 3 1040 4892 14 2 0 chr5 59735235 59735800 -92801459 + L1Md_A LINE L1 5021 5586 -297 3 1040 8609 21 0 0 chr5 59735800 59736796 -92800463 + L1Md_A LINE L1 5587 6582 0 3 1040 23 78 0 0 chr5 59736921 59736972 -92800287 + AT_rich Low_complexity Low_complexity 1 51 0 3 1040 288 0 0 0 chr5 59737396 59737428 -92799831 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 1040 816 159 72 0 chr5 59738074 59738212 -92799047 + B1_Mur4 SINE Alu 2 149 -1 3 1040 375 368 9 9 chr5 59738216 59738323 -92798936 - ID_B1 SINE B4 -117 107 1 3 1040 232 241 69 0 chr5 59738356 59738414 -92798845 + ID SINE ID 24 85 -139 3 1040 690 204 192 6 chr5 59738729 59738906 -92798353 + RLTR25A LTR ERVK 1 210 -893 3 1040 1616 213 15 3 chr5 59738907 59739236 -92798023 - Lx5 LINE L1 -338 6712 6380 3 1040 200 59 29 0 chr5 59739294 59739328 -92797931 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1040 350 90 45 0 chr5 59739330 59739397 -92797862 + MMVL30-int LTR ERV1 1442 1511 -2187 3 1040 570 29 0 0 chr5 59739502 59739570 -92797689 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 1040 351 0 0 0 chr5 59739570 59739608 -92797651 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1040 8840 106 34 11 chr5 59739737 59741128 -92796131 + MMVL30-int LTR ERV1 1527 3421 -1642 3 1040 3786 93 9 29 chr5 59741128 59741683 -92795576 + MMVL30-int LTR ERV1 3088 3631 -67 3 1040 629 135 22 57 chr5 59741667 59741815 -92795444 + RLTR1B-int LTR ERV1 3221 3299 0 3 1040 3611 74 4 76 chr5 59741815 59742357 -92794902 + RLTR1C LTR ERV1 1 503 0 3 1040 8440 198 34 5 chr5 59742362 59744153 -92793106 - Lx5 LINE L1 -907 6143 4279 3 1040 390 91 0 0 chr5 59744153 59744208 -92793051 + (TTA)n Simple_repeat Simple_repeat 3 57 0 3 1040 8440 198 36 5 chr5 59744208 59744501 -92792758 - Lx5 LINE L1 -1599 4278 3986 3 1040 24 53 0 0 chr5 59744801 59744839 -92792420 + AT_rich Low_complexity Low_complexity 1 38 0 3 1040 24 77 0 0 chr5 59745292 59745344 -92791915 + AT_rich Low_complexity Low_complexity 1 52 0 3 1040 198 0 0 0 chr5 59745589 59745611 -92791648 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1040 402 214 0 0 chr5 59745699 59745788 -92791471 + (CATA)n Simple_repeat Simple_repeat 4 92 0 3 1040 32 43 0 0 chr5 59745943 59745989 -92791270 + AT_rich Low_complexity Low_complexity 1 46 0 3 1040 209 227 0 0 chr5 59745999 59746043 -92791216 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1040 768 89 0 0 chr5 59746043 59746166 -92791093 + (TG)n Simple_repeat Simple_repeat 2 124 0 3 1040 1144 357 54 40 chr5 59746177 59747047 -92790212 + Lx9 LINE L1 6379 7260 -384 3 1040 1365 291 20 33 chr5 59747168 59747559 -92789700 - MTC LTR MaLR -11 410 25 3 1040 210 171 0 0 chr5 59747653 59747688 -92789571 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1040 309 82 0 0 chr5 59747720 59747769 -92789490 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 3 1040 200 281 0 0 chr5 59748825 59748882 -92788377 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 3 1040 3494 182 73 27 chr5 59748884 59749182 -92788077 - Lx2B LINE L1 -20 6980 6679 3 1040 2767 55 85 0 chr5 59749182 59749547 -92787712 + MTA_Mm LTR MaLR 1 396 0 3 1040 3494 174 46 27 chr5 59749547 59750303 -92786956 - Lx2B LINE L1 -322 6678 5788 3 1040 180 0 0 0 chr5 59750307 59750327 -92786932 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1040 337 98 0 0 chr5 59750348 59750399 -92786860 - Lx2 LINE L1 -17 6980 6930 3 1040 565 80 11 11 chr5 59750977 59751066 -92786193 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 1040 10936 64 0 1 chr5 59751160 59752514 -92784745 + RLTR45-int LTR ERVK 5893 7244 0 3 1040 2371 156 58 21 chr5 59752514 59752979 -92784280 + RLTR45 LTR ERVK 1 482 0 3 1040 512 321 124 19 chr5 59753030 59753287 -92783972 - B4A SINE B4 -6 286 3 3 1040 3836 131 3 11 chr5 59753342 59753961 -92783298 - Lx LINE L1 -3 6651 6038 3 1040 228 250 0 0 chr5 59754436 59754500 -92782759 + (TATG)n Simple_repeat Simple_repeat 1 64 0 3 1040 225 324 53 21 chr5 59754550 59754739 -92782520 - L1M3 LINE L1 -2456 3684 3490 3 1040 29 90 0 0 chr5 59755178 59755256 -92782003 + AT_rich Low_complexity Low_complexity 1 78 0 3 1040 228 86 0 0 chr5 59756644 59756679 -92780580 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1040 3308 195 69 32 chr5 59756812 59757591 -92779668 + L1_Mur2 LINE L1 5060 5867 -10 3 1040 620 235 184 41 chr5 59757571 59757864 -92779395 + Lx4B LINE L1 6720 7054 -4 3 1040 929 125 0 0 chr5 59758569 59758705 -92778554 - B1_Mus1 SINE Alu 0 148 13 3 1040 6411 144 24 13 chr5 59759581 59761188 -92776071 - L1_Mus4 LINE L1 -59 6577 4945 3 1040 679 296 80 146 chr5 59761212 59761810 -92775449 - MTC-int LTR MaLR -170 1088 436 3 1040 759 326 85 34 chr5 59762343 59762848 -92774411 - Lx9 LINE L1 -324 7320 6790 3 1040 386 351 100 48 chr5 59762953 59763054 -92774205 + Lx8 LINE L1 6085 6189 -1284 3 1040 441 0 0 0 chr5 59763054 59763103 -92774156 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1040 386 351 100 48 chr5 59763103 59763420 -92773839 + Lx8 LINE L1 6190 6525 -948 3 1040 12024 61 4 0 chr5 59763531 59765756 -92771503 - L1Md_F2 LINE L1 0 6582 4350 3 1040 2931 67 0 8 chr5 59765756 59766149 -92771110 + L1_Mm LINE L1 3736 4125 -1758 3 1040 4418 64 0 0 chr5 59766137 59766701 -92770558 - L1_Mm LINE L1 -970 4913 4350 3 1040 4641 65 3 0 chr5 59766701 59767313 -92769946 + L1_Mm LINE L1 3736 4349 -1534 3 1040 1586 170 26 62 chr5 59767355 59767694 -92769565 - ORR1A4 LTR MaLR 0 329 3 3 1040 278 401 74 6 chr5 59767908 59768071 -92769188 - MLT1F LTR MaLR -362 186 13 3 1040 261 0 0 0 chr5 59768275 59768304 -92768955 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1040 21 89 0 0 chr5 59768343 59768399 -92768860 + AT_rich Low_complexity Low_complexity 1 56 0 3 1040 455 292 58 17 chr5 59768420 59768594 -92768665 + L1_Mur3 LINE L1 374 554 -7158 3 1040 492 248 16 0 chr5 59768602 59768723 -92768536 + Lx7 LINE L1 6809 6931 -765 3 16 440 261 53 8 chr5 59768753 59768922 -92768337 + Lx7 LINE L1 7303 7460 0 3 1041 667 352 98 6 chr5 59769265 59769622 -92767637 - Lx8 LINE L1 -714 6759 6370 3 1041 856 349 32 48 chr5 59769626 59770128 -92767131 + Lx8 LINE L1 6799 7292 -181 3 1041 456 19 0 0 chr5 59770565 59770618 -92766641 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1041 280 310 0 123 chr5 59770625 59770739 -92766520 - RSINE1 SINE B4 -58 107 8 3 1041 685 244 65 5 chr5 59771937 59772122 -92765137 + Lx6 LINE L1 6692 6887 -573 3 1041 1839 159 108 2 chr5 59772541 59772938 -92764321 + Lx LINE L1 6304 7008 0 3 1041 215 61 30 0 chr5 59773074 59773107 -92764152 + (TATAA)n Simple_repeat Simple_repeat 2 35 0 3 1041 2397 230 19 17 chr5 59773173 59773847 -92763412 - L1_Mur2 LINE L1 -1314 4563 3560 3 1041 1823 191 33 16 chr5 59773827 59774463 -92762796 - L1_Mur2 LINE L1 -4315 1562 920 3 1041 37 39 0 0 chr5 59775007 59775058 -92762201 + AT_rich Low_complexity Low_complexity 1 51 0 3 1041 32 0 0 0 chr5 59775359 59775391 -92761868 + AT_rich Low_complexity Low_complexity 1 32 0 3 1041 25 0 0 0 chr5 59775809 59775834 -92761425 + AT_rich Low_complexity Low_complexity 1 25 0 4 1041 277 414 15 15 chr5 59775841 59775971 -92761288 + B3 SINE B2 15 144 -72 4 1041 230 81 27 0 chr5 59775977 59776014 -92761245 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1041 257 344 48 10 chr5 59776468 59776664 -92760595 - L1M3 LINE L1 -394 5795 5587 4 1041 22 0 0 0 chr5 59777266 59777288 -92759971 + AT_rich Low_complexity Low_complexity 1 22 0 4 1041 208 196 0 21 chr5 59777290 59777337 -92759922 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1041 4954 146 41 0 chr5 59777340 59778140 -92759119 + Lx3B LINE L1 6140 6972 -1 4 1041 3698 86 2 12 chr5 59778359 59778962 -92758297 - L1_Mus2 LINE L1 -625 5941 5347 4 1041 4496 95 11 0 chr5 59778962 59779584 -92757675 + L1_Mus2 LINE L1 5936 6564 -2 4 1041 23 68 0 0 chr5 59779588 59779632 -92757627 + AT_rich Low_complexity Low_complexity 1 44 0 4 1041 464 336 89 32 chr5 59780303 59780641 -92756618 - L1M4c LINE L1 -4781 1603 1247 4 1041 303 171 0 0 chr5 59781823 59781893 -92755366 - L1_Mus3 LINE L1 0 6638 6569 4 1041 881 319 67 36 chr5 59782238 59782686 -92754573 + Lx8 LINE L1 6148 6609 -864 4 1041 591 334 50 84 chr5 59782705 59783202 -92754057 + Lx8 LINE L1 6797 7276 -197 4 1041 3466 156 19 7 chr5 59783277 59783857 -92753402 + Lx4A LINE L1 6243 6829 -229 4 1041 26 93 0 0 chr5 59783904 59783979 -92753280 + AT_rich Low_complexity Low_complexity 1 75 0 4 1041 24 0 0 0 chr5 59784142 59784166 -92753093 + AT_rich Low_complexity Low_complexity 1 24 0 4 1041 1455 140 0 0 chr5 59784184 59784413 -92752846 + Lx3_Mus LINE L1 5569 5797 -89 4 1041 1183 54 0 0 chr5 59784413 59784560 -92752699 + B1_Mm SINE Alu 1 147 0 4 1041 6893 122 39 44 chr5 59784625 59785963 -92751296 - L1_Mus2 LINE L1 0 6566 5236 4 1041 387 0 0 0 chr5 59785963 59786006 -92751253 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 1041 6893 129 25 8 chr5 59786006 59786483 -92750776 - L1_Mus2 LINE L1 -648 5235 4747 4 1041 2891 105 26 0 chr5 59786487 59786915 -92750344 + Lx3_Mus LINE L1 5792 6230 -779 4 1041 2643 84 2 3 chr5 59786905 59787293 -92749966 - L1_Mus3 LINE L1 -710 5928 5539 4 1041 489 76 0 0 chr5 59787363 59787429 -92749830 + (CA)n Simple_repeat Simple_repeat 2 67 0 4 1041 21 0 0 0 chr5 59787617 59787638 -92749621 + AT_rich Low_complexity Low_complexity 1 21 0 4 1041 27 29 0 0 chr5 59787975 59788009 -92749250 + AT_rich Low_complexity Low_complexity 1 34 0 4 1041 34 65 0 0 chr5 59788182 59788244 -92749015 + AT_rich Low_complexity Low_complexity 1 62 0 4 1041 749 272 56 13 chr5 59788343 59788574 -92748685 + Lx2B LINE L1 6756 6996 -4 4 1041 612 52 31 10 chr5 59788652 59788750 -92748509 + L1Md_T LINE L1 6483 6582 0 4 1041 298 323 92 72 chr5 59788764 59788971 -92748288 + MTE-int LTR MaLR 1 211 -1369 4 1041 30 0 0 0 chr5 59788971 59789001 -92748258 + AT_rich Low_complexity Low_complexity 1 30 0 4 1041 351 388 89 22 chr5 59789232 59789456 -92747803 + MTE2a LTR MaLR 141 379 0 4 1041 3783 52 6 2 chr5 59789553 59790032 -92747227 - L1Md_F3 LINE L1 -12 6572 6092 4 1041 1227 258 45 25 chr5 59790034 59790388 -92746871 - ORR1C2 LTR MaLR -23 361 1 4 1041 23 33 0 0 chr5 59790396 59790426 -92746833 + AT_rich Low_complexity Low_complexity 1 30 0 4 1041 3012 102 4 34 chr5 59790522 59790998 -92746261 - Lx LINE L1 -6 6648 6187 4 1041 32 67 0 0 chr5 59791324 59791384 -92745875 + AT_rich Low_complexity Low_complexity 1 60 0 4 1041 847 261 33 25 chr5 59792331 59792571 -92744688 + Lx6 LINE L1 7206 7447 -13 4 1041 308 331 56 11 chr5 59792714 59792894 -92744365 - B3A SINE B2 -10 188 1 4 1041 324 0 0 0 chr5 59793811 59793847 -92743412 + (TAA)n Simple_repeat Simple_repeat 1 36 0 4 1041 395 220 21 64 chr5 59795816 59795957 -92741302 - Lx7 LINE L1 0 7696 7562 4 1041 651 216 126 34 chr5 59796110 59796146 -92741113 - RMER12 LTR ERVK -133 1189 1147 4 1041 422 14 42 28 chr5 59796146 59796218 -92741041 + (TTTG)n Simple_repeat Simple_repeat 2 74 0 4 1041 651 216 126 34 chr5 59796218 59796387 -92740872 - RMER12 LTR ERVK -176 1146 965 4 1041 759 42 0 0 chr5 59796408 59796503 -92740756 + (TGGA)n Simple_repeat Simple_repeat 1 95 0 4 1041 3393 194 45 16 chr5 59796503 59797243 -92740016 - RMER12 LTR ERVK -561 761 1 4 1041 1655 196 82 59 chr5 59797245 59797705 -92739554 - L1Md_F2 LINE L1 -87 5793 5320 4 1041 1508 166 76 67 chr5 59797705 59798111 -92739148 - RMER17C LTR ERVK 0 410 1 4 1041 1655 196 82 59 chr5 59798111 59798160 -92739099 - L1Md_F2 LINE L1 -561 5319 5272 4 1041 3016 78 18 14 chr5 59798171 59798674 -92738585 - L1Md_F2 LINE L1 -613 5969 5612 4 1041 1439 220 49 61 chr5 59798674 59798871 -92738388 + RMER17A LTR ERVK 143 339 -412 4 1041 732 43 0 0 chr5 59798871 59798963 -92738296 + (TTC)n Simple_repeat Simple_repeat 3 94 0 4 1041 1439 220 49 61 chr5 59798963 59799260 -92737999 + RMER17A LTR ERVK 340 630 -121 4 1041 1246 132 73 17 chr5 59799260 59799492 -92737767 + L1_Mus3 LINE L1 6388 6632 -6 4 1041 1439 220 49 61 chr5 59799492 59799505 -92737754 + RMER17A LTR ERVK 631 643 -108 4 1041 22 35 0 0 chr5 59799511 59799540 -92737719 + AT_rich Low_complexity Low_complexity 1 29 0 4 1041 416 19 19 0 chr5 59800116 59800169 -92737090 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 4 1041 212 227 30 0 chr5 59800175 59800241 -92737018 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1041 21 0 0 0 chr5 59800609 59800630 -92736629 + AT_rich Low_complexity Low_complexity 1 21 0 4 1041 34 55 0 0 chr5 59801163 59801218 -92736041 + AT_rich Low_complexity Low_complexity 1 55 0 4 1041 4602 205 48 20 chr5 59801263 59802420 -92734839 - Lx4B LINE L1 -20 6980 5770 4 1041 2254 276 68 36 chr5 59802522 59803900 -92733359 + Lx6 LINE L1 5303 6734 -726 4 1041 2054 195 144 42 chr5 59803900 59804526 -92732733 + RMER6C LTR ERVK 1 690 0 4 1041 1806 298 93 58 chr5 59804526 59804610 -92732649 + Lx6 LINE L1 6735 6816 -644 4 1041 580 334 71 104 chr5 59804627 59804782 -92732477 - RMER20B LTR ERVK -13 614 461 4 1041 1902 188 40 57 chr5 59804782 59805206 -92732053 + RLTR9B2 LTR ERVK 4 420 0 4 1041 580 334 71 104 chr5 59805206 59805444 -92731815 - RMER20B LTR ERVK -167 460 234 4 1041 1883 276 75 13 chr5 59805651 59806254 -92731005 + Lx6 LINE L1 6812 7451 -9 4 1041 396 0 0 0 chr5 59806325 59806369 -92730890 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1041 302 343 97 0 chr5 59806618 59806752 -92730507 + Lx8 LINE L1 7116 7262 -211 4 1041 378 317 153 31 chr5 59807495 59807749 -92729510 - Lx9 LINE L1 -924 6720 6436 4 1041 368 256 24 16 chr5 59807802 59807925 -92729334 + Lx9 LINE L1 6771 6894 -750 4 1041 739 299 60 14 chr5 59808121 59808471 -92728788 + Lx9 LINE L1 7129 7494 -150 4 1041 557 28 0 14 chr5 59808842 59808914 -92728345 + (GA)n Simple_repeat Simple_repeat 2 72 0 4 1041 204 125 0 0 chr5 59810128 59810160 -92727099 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1041 34 42 0 0 chr5 59810303 59810351 -92726908 + AT_rich Low_complexity Low_complexity 1 48 0 4 1041 251 54 27 0 chr5 59811039 59811076 -92726183 + (TTTAG)n Simple_repeat Simple_repeat 1 38 0 4 1041 235 0 57 0 chr5 59811350 59811385 -92725874 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 1041 4088 177 41 1 chr5 59811385 59812195 -92725064 - L1_Mm LINE L1 -521 5362 4521 4 1041 1570 147 41 0 chr5 59812172 59812438 -92724821 + L1_Mus4 LINE L1 5951 6227 -409 4 1041 3914 150 22 13 chr5 59812832 59813508 -92723751 - L1_Mur1 LINE L1 -35 5851 5170 4 1041 3252 249 52 76 chr5 59813521 59814363 -92722896 + Lx2 LINE L1 5863 6686 -311 4 1041 2849 96 5 21 chr5 59814363 59814791 -92722468 - BGLII LTR ERVK 0 421 1 4 1041 3252 249 52 76 chr5 59814791 59815079 -92722180 + Lx2 LINE L1 6687 6966 -31 4 1041 1905 157 6 9 chr5 59815088 59815410 -92721849 + Lx3B LINE L1 6344 6664 -309 4 1041 378 0 0 0 chr5 59815411 59815453 -92721806 + (A)n Simple_repeat Simple_repeat 1 42 0 4 1041 348 178 0 27 chr5 59815488 59815563 -92721696 - ORR1A3-int LTR MaLR -446 1517 1445 4 1041 957 363 62 32 chr5 59815629 59816398 -92720861 - Lx8 LINE L1 -288 7185 6394 4 1041 22 0 0 0 chr5 59818075 59818097 -92719162 + AT_rich Low_complexity Low_complexity 1 22 0 4 1041 22 88 0 0 chr5 59818466 59818523 -92718736 + AT_rich Low_complexity Low_complexity 1 57 0 4 1041 318 26 0 0 chr5 59818870 59818909 -92718350 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1041 447 19 0 0 chr5 59820093 59820145 -92717114 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 1041 1655 125 0 23 chr5 59820148 59820410 -92716849 + Lx3A LINE L1 5273 5528 -358 4 1041 1296 66 18 0 chr5 59820409 59820575 -92716684 + Lx3A LINE L1 5708 5876 -1133 4 1041 1679 121 35 0 chr5 59820574 59820830 -92716429 + Lx3A LINE L1 6377 6641 -340 4 1041 27 0 0 0 chr5 59821138 59821165 -92716094 + AT_rich Low_complexity Low_complexity 1 27 0 4 1041 364 316 88 10 chr5 59821168 59821360 -92715899 + B3 SINE B2 2 208 -8 4 1041 277 316 96 6 chr5 59821642 59821798 -92715461 + RMER15 LTR ERVL 406 575 0 4 1041 261 0 0 0 chr5 59821957 59821986 -92715273 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1041 24 0 0 0 chr5 59822005 59822029 -92715230 + AT_rich Low_complexity Low_complexity 1 24 0 4 1041 423 342 6 63 chr5 59824110 59824269 -92712990 + RSINE1 SINE B4 16 165 0 4 1041 21 0 0 0 chr5 59824801 59824822 -92712437 + AT_rich Low_complexity Low_complexity 1 21 0 4 1041 32 75 0 0 chr5 59825757 59825824 -92711435 + AT_rich Low_complexity Low_complexity 1 67 0 4 1041 6281 171 27 11 chr5 59826759 59827946 -92709313 + Lx2 LINE L1 5791 6996 -1 4 1041 340 118 13 26 chr5 59828143 59828221 -92709038 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 4 1041 2411 282 32 23 chr5 59828646 59829415 -92707844 - Lx7 LINE L1 -683 7013 6238 4 1041 1251 299 56 13 chr5 59829535 59830003 -92707256 - Lx6 LINE L1 -973 6487 6000 4 1041 23 33 0 0 chr5 59830408 59830438 -92706821 + AT_rich Low_complexity Low_complexity 1 30 0 4 1041 248 62 43 58 chr5 59830519 59830588 -92706671 + T-rich Low_complexity Low_complexity 5 72 0 4 1041 488 86 14 0 chr5 59830588 59830658 -92706601 - B1_Mus2 SINE Alu 0 147 77 4 1041 2883 27 0 3 chr5 59830823 59831161 -92706098 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1041 23471 19 8 4 chr5 59831161 59834279 -92702980 + IAPEz-int LTR ERVK 8 3165 -3316 4 1041 10073 17 3 0 chr5 59834268 59835402 -92701857 + IAPEz-int LTR ERVK 5345 6481 0 4 1041 2893 27 0 3 chr5 59835402 59835740 -92701519 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1041 281 168 125 81 chr5 59835820 59835956 -92701303 + RMER17B LTR ERVK 316 457 -501 4 1041 240 100 0 0 chr5 59835983 59836023 -92701236 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 4 1041 304 264 169 27 chr5 59838830 59838978 -92698281 + RLTR41 LTR ERV1 276 444 -2 4 1041 459 160 0 0 chr5 59839207 59839301 -92697958 + T-rich Low_complexity Low_complexity 1 94 0 4 1041 5696 96 18 54 chr5 59839558 59840800 -92696459 + Lx3_Mus LINE L1 4984 6167 -842 4 1041 2348 120 23 20 chr5 59840846 59841237 -92696022 + RLTR9E LTR ERVK 14 405 -4 5 1041 5416 128 19 0 chr5 59841238 59842067 -92695192 + Lx3_Mus LINE L1 6165 7009 0 4 1041 21 57 0 0 chr5 59842333 59842368 -92694891 + AT_rich Low_complexity Low_complexity 1 35 0 5 1041 270 291 36 85 chr5 59842556 59842721 -92694538 + RMER12 LTR ERVK 666 822 -500 5 1041 204 143 0 0 chr5 59842761 59842803 -92694456 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 1041 28 48 0 0 chr5 59843520 59843562 -92693697 + AT_rich Low_complexity Low_complexity 1 42 0 5 1041 281 174 63 32 chr5 59843854 59843949 -92693310 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 5 1041 24 0 0 0 chr5 59843952 59843976 -92693283 + AT_rich Low_complexity Low_complexity 1 24 0 5 1041 203 88 29 0 chr5 59844171 59844205 -92693054 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1041 539 177 49 54 chr5 59844351 59844554 -92692705 + RMER17C LTR ERVK 74 275 -135 5 1041 872 290 69 28 chr5 59845062 59845381 -92691878 + MTC LTR MaLR 3 334 -87 5 1041 273 169 0 0 chr5 59845405 59845464 -92691795 + A-rich Low_complexity Low_complexity 1 59 0 5 1041 2901 29 0 0 chr5 59846089 59846437 -92690822 - L1_Mm LINE L1 -1303 4580 4233 5 1041 1921 47 0 0 chr5 59846437 59846673 -92690586 + L1Md_F3 LINE L1 6334 6569 -15 5 1041 266 106 0 21 chr5 59846771 59846819 -92690440 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1041 279 0 0 0 chr5 59846832 59846863 -92690396 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1041 22 0 0 0 chr5 59846977 59846999 -92690260 + AT_rich Low_complexity Low_complexity 1 22 0 5 1041 34 24 0 0 chr5 59847062 59847103 -92690156 + AT_rich Low_complexity Low_complexity 1 41 0 5 1041 27 62 0 0 chr5 59847392 59847440 -92689819 + AT_rich Low_complexity Low_complexity 1 48 0 5 1041 484 195 172 26 chr5 59847623 59847739 -92689520 + B1_Mm SINE Alu 9 141 -6 5 1041 2955 195 30 2 chr5 59847880 59848471 -92688788 - L1_Mur2 LINE L1 -2991 2886 2279 5 1041 2524 215 21 17 chr5 59848478 59849578 -92687681 - L1_Mur2 LINE L1 -4081 1796 692 5 1041 927 73 0 0 chr5 59849854 59849991 -92687268 + (CA)n Simple_repeat Simple_repeat 2 138 0 5 1041 315 0 0 0 chr5 59849991 59850025 -92687234 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1041 237 160 20 0 chr5 59850027 59850077 -92687182 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1041 204 135 0 0 chr5 59850112 59850149 -92687110 + (TCTCCC)n Simple_repeat Simple_repeat 6 42 0 5 1041 23 54 0 0 chr5 59850576 59850613 -92686646 + AT_rich Low_complexity Low_complexity 1 37 0 5 1041 2256 40 80 0 chr5 59850747 59851048 -92686211 + L1Md_F3 LINE L1 6246 6570 -14 5 1041 353 65 0 0 chr5 59851124 59851170 -92686089 - RLTR10B LTR ERVK 0 292 247 5 1041 349 47 0 0 chr5 59851170 59851213 -92686046 + RLTR10-int LTR ERVK 484 526 -1461 5 1041 2711 55 14 5 chr5 59851213 59851581 -92685678 - RLTR10 LTR ERVK -19 371 1 5 1041 618 290 94 94 chr5 59851584 59851999 -92685260 + MT2A LTR ERVL 1 539 -62 5 1041 368 97 16 0 chr5 59852004 59852066 -92685193 + (TA)n Simple_repeat Simple_repeat 1 63 0 5 1041 22 35 0 0 chr5 59852954 59852983 -92684276 + AT_rich Low_complexity Low_complexity 1 29 0 5 1041 329 362 43 65 chr5 59853045 59853380 -92683879 - ORR1E LTR MaLR -2 377 29 5 1041 383 229 8 0 chr5 59853437 59853555 -92683704 + (TA)n Simple_repeat Simple_repeat 1 119 0 5 1041 24 91 0 0 chr5 59853646 59853712 -92683547 + AT_rich Low_complexity Low_complexity 1 66 0 5 1041 1636 37 9 5 chr5 59854156 59854372 -92682887 - L1Md_F3 LINE L1 -2 6582 6366 5 1041 3817 20 2 0 chr5 59854372 59854814 -92682445 + L1Md_F3 LINE L1 5886 6328 -254 5 1041 946 136 0 0 chr5 59854928 59855068 -92682191 + B1_Mus1 SINE Alu 9 148 0 5 1041 2512 178 14 6 chr5 59856125 59856612 -92680647 - L1_Mur2 LINE L1 -588 5289 4799 5 1041 2157 231 24 46 chr5 59856598 59857231 -92680028 + Lx2B LINE L1 6335 7053 -5 5 1041 4625 106 9 10 chr5 59857997 59859008 -92678251 + L1Md_F2 LINE L1 4965 6562 -92 5 1041 7304 82 6 4 chr5 59859011 59860002 -92677257 + L1Md_F2 LINE L1 5587 6579 -3 5 1041 6311 124 19 17 chr5 59860002 59861702 -92675557 + L1_Mus2 LINE L1 4865 6566 0 5 1041 929 312 82 40 chr5 59861843 59862014 -92675245 - Tigger6a DNA MER2_type -582 501 312 5 1041 2024 98 43 58 chr5 59862014 59862340 -92674919 + L1Md_F2 LINE L1 6250 6570 -12 5 1041 929 312 82 40 chr5 59862340 59862642 -92674617 - Tigger6a DNA MER2_type -772 311 8 5 1041 292 284 13 13 chr5 59863116 59863191 -92674068 + B3 SINE B2 11 85 -131 5 1041 267 342 25 50 chr5 59863191 59863234 -92674025 + RSINE1 SINE B4 12 126 -39 5 1041 21 0 0 0 chr5 59863328 59863349 -92673910 + AT_rich Low_complexity Low_complexity 1 21 0 5 1041 510 361 19 19 chr5 59863580 59863741 -92673518 + RSINE1 SINE B4 3 163 -2 5 1041 1158 199 98 72 chr5 59863933 59863956 -92673303 - RMER17C LTR ERVK 0 410 390 5 1041 1625 42 0 0 chr5 59863956 59864148 -92673111 + B2_Mm1a SINE B2 1 192 -1 5 1041 1158 199 98 72 chr5 59864148 59864389 -92672870 - RMER17C LTR ERVK -21 389 146 5 1041 828 57 0 0 chr5 59864389 59864495 -92672764 + (GAA)n Simple_repeat Simple_repeat 3 108 0 5 1041 1158 199 98 72 chr5 59864495 59864629 -92672630 - RMER17C LTR ERVK -265 145 1 5 1041 228 325 24 0 chr5 59864788 59864911 -92672348 + L1M4 LINE L1 5758 5883 -295 5 1041 267 103 0 0 chr5 59865254 59865293 -92671966 + (TATG)n Simple_repeat Simple_repeat 4 42 0 5 1041 223 202 50 0 chr5 59865296 59865395 -92671864 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 5 1041 318 352 33 88 chr5 59865418 59865633 -92671626 - ID_B1 SINE B4 -6 218 16 5 1041 239 265 0 8 chr5 59866053 59866129 -92671130 + GA-rich Low_complexity Low_complexity 1 75 0 5 1041 394 250 38 9 chr5 59866135 59866240 -92671019 - RLTR28 LTR ERVL -3 521 414 5 1041 1299 201 26 8 chr5 59866242 59866507 -92670752 + Lx4A LINE L1 441 710 -6376 5 1041 775 124 98 0 chr5 59866505 59866658 -92670601 + Lx4A LINE L1 1580 1747 -4130 5 1041 1045 175 17 35 chr5 59866690 59866879 -92670380 + Lx4A LINE L1 3683 3873 -2004 5 1041 1678 175 47 7 chr5 59866879 59867178 -92670081 - RLTR10E LTR ERVK 0 311 1 5 1041 1045 175 17 35 chr5 59867178 59867219 -92670040 + Lx4A LINE L1 3874 3908 -1969 5 1041 10325 160 47 3 chr5 59867749 59868030 -92669229 + Lx4A LINE L1 3893 4187 -1690 5 1041 339 25 0 0 chr5 59868030 59868070 -92669189 + (TA)n Simple_repeat Simple_repeat 2 41 0 5 1041 10325 164 47 3 chr5 59868070 59870802 -92666457 + Lx4A LINE L1 4188 7058 0 5 1041 23 97 0 0 chr5 59870802 59870874 -92666385 + AT_rich Low_complexity Low_complexity 1 72 0 5 1041 1620 198 72 8 chr5 59870903 59871279 -92665980 - RLTR28 LTR ERVL -122 402 3 5 1041 615 360 82 20 chr5 59872502 59872808 -92664451 - MTEa LTR MaLR -53 326 2 5 1041 240 148 67 11 chr5 59873018 59873107 -92664152 + GA-rich Low_complexity Low_complexity 4 97 0 5 1041 291 202 8 16 chr5 59873133 59873259 -92664000 + GA-rich Low_complexity Low_complexity 2 126 0 5 1041 207 0 0 0 chr5 59874329 59874352 -92662907 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1041 1248 275 5 41 chr5 59874364 59874781 -92662478 + Lx2B LINE L1 6598 6999 -1 5 1041 1495 249 31 28 chr5 59874875 59874893 -92662366 - L1_Mur3 LINE L1 -3473 2407 2392 5 1041 249 33 0 0 chr5 59874893 59874923 -92662336 + (TTCTG)n Simple_repeat Simple_repeat 4 33 0 5 1041 1495 249 31 28 chr5 59874923 59875251 -92662008 - L1_Mur3 LINE L1 -3489 2391 2058 5 1041 351 44 0 0 chr5 59875251 59875296 -92661963 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1041 1495 249 31 28 chr5 59875296 59875493 -92661766 - L1_Mur3 LINE L1 -3823 2057 1861 5 1041 663 46 0 0 chr5 59875588 59875675 -92661584 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 1041 1583 198 67 61 chr5 59875826 59876121 -92661138 - ORR1B1 LTR MaLR -8 386 89 5 1041 873 72 21 35 chr5 59876121 59876266 -92660993 - L1Md_F3 LINE L1 0 6584 6442 5 1041 1583 168 91 46 chr5 59876266 59876358 -92660901 - ORR1B1 LTR MaLR -306 88 9 5 1041 522 213 16 0 chr5 59876609 59876736 -92660523 - L1_Mur3 LINE L1 -3550 2330 2202 5 1041 213 154 0 0 chr5 59877104 59877143 -92660116 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1041 24 53 0 0 chr5 59877161 59877199 -92660060 + AT_rich Low_complexity Low_complexity 1 38 0 5 1041 1818 183 3 3 chr5 59877542 59877871 -92659388 - ORR1A4 LTR MaLR 0 329 1 5 1041 501 328 66 83 chr5 59878533 59878822 -92658437 + B4 SINE B4 9 292 0 5 1041 225 338 14 0 chr5 59879080 59879151 -92658108 + ID4 SINE ID 10 81 -2 5 1041 27 0 0 0 chr5 59879428 59879455 -92657804 + AT_rich Low_complexity Low_complexity 1 27 0 5 1041 306 269 0 0 chr5 59879517 59879584 -92657675 - ORR1D2 LTR MaLR -39 331 265 5 1041 9039 68 1 2 chr5 59879587 59880929 -92656330 - L1Md_F2 LINE L1 -570 6012 4672 5 1041 1027 214 108 51 chr5 59880929 59881123 -92656136 - RMER4B LTR ERVK -236 349 139 5 1041 4117 79 25 4 chr5 59881123 59881680 -92655579 + L1Md_F2 LINE L1 6012 6580 -2 5 1041 1027 214 108 51 chr5 59881680 59881800 -92655459 - RMER4B LTR ERVK -447 138 17 5 1041 195 146 0 0 chr5 59882155 59882196 -92655063 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1041 7579 57 3 5 chr5 59882423 59883381 -92653878 - L1Md_F2 LINE L1 -12 6570 5615 5 1041 7082 91 5 6 chr5 59883380 59884589 -92652670 - L1_Mus1 LINE L1 -21 6546 5337 5 1041 303 68 0 0 chr5 59884581 59884625 -92652634 + L1_Mm LINE L1 1642 1685 -4198 5 1041 327 181 9 28 chr5 59884687 59884795 -92652464 + CT-rich Low_complexity Low_complexity 3 108 0 5 1041 1066 175 16 0 chr5 59886928 59887111 -92650148 - B2_Mm2 SINE B2 -8 187 2 5 1041 6513 156 18 9 chr5 59887572 59889325 -92647934 + Lx LINE L1 4877 6646 -8 5 1041 21 0 0 0 chr5 59889419 59889440 -92647819 + AT_rich Low_complexity Low_complexity 1 21 0 5 1041 1508 174 63 16 chr5 59890984 59891287 -92645972 + ORR1A3 LTR MaLR 1 317 -9 5 1041 339 306 70 8 chr5 59892396 59892653 -92644606 + L1M4 LINE L1 5089 5361 -785 5 1041 356 404 77 1 chr5 59893739 59894001 -92643258 - MLT1E2 LTR MaLR -45 579 298 5 1041 21 36 0 0 chr5 59894579 59894607 -92642652 + AT_rich Low_complexity Low_complexity 1 28 0 5 1041 6191 126 79 4 chr5 59894972 59895997 -92641262 - Lx3_Mus LINE L1 0 7009 5908 5 1041 8636 105 30 2 chr5 59895999 59897273 -92639986 + Lx3_Mus LINE L1 4578 5886 0 5 1041 513 0 0 0 chr5 59897603 59897660 -92639599 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1041 301 171 23 0 chr5 59897798 59897886 -92639373 + GA-rich Low_complexity Low_complexity 4 93 0 5 1041 4954 138 43 21 chr5 59897895 59898808 -92638451 - RLTR13D3 LTR ERVK 0 1114 1 5 1041 214 132 35 70 chr5 59898811 59898868 -92638391 + A-rich Low_complexity Low_complexity 4 58 0 5 1041 261 141 0 123 chr5 59898937 59899010 -92638249 + L1_Mur2 LINE L1 4100 4163 -1714 5 130 7389 156 24 21 chr5 59898994 59901202 -92636057 + Lx LINE L1 4445 6654 0 5 1042 386 328 8 8 chr5 59901365 59901497 -92635762 + Lx9 LINE L1 6358 6489 -1155 6 1042 1317 68 0 0 chr5 59901523 59901700 -92635559 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 6 1042 1913 234 67 10 chr5 59901756 59901934 -92635325 - RMER1B Other Other -2 1064 881 6 1042 189 74 0 0 chr5 59901934 59901961 -92635298 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1042 1913 234 67 10 chr5 59901961 59902261 -92634998 - RMER1B Other Other -186 880 559 6 1042 4716 119 22 3 chr5 59902362 59903101 -92634158 + Lx3_Mus LINE L1 6249 7001 -8 6 1042 255 93 0 0 chr5 59903391 59903434 -92633825 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 6 1042 189 171 0 0 chr5 59903621 59903656 -92633603 + GA-rich Low_complexity Low_complexity 2 36 0 6 1042 669 86 0 0 chr5 59903658 59903751 -92633508 + (GAAA)n Simple_repeat Simple_repeat 4 96 0 6 1042 495 0 0 0 chr5 59904168 59904223 -92633036 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1042 279 0 0 0 chr5 59904223 59904253 -92633006 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1042 750 32 0 0 chr5 59904662 59904755 -92632504 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 6 1042 320 326 54 13 chr5 59904763 59904912 -92632347 + MLT1A0 LTR MaLR 211 365 0 6 1042 22 35 0 0 chr5 59905711 59905740 -92631519 + AT_rich Low_complexity Low_complexity 1 29 0 6 1042 2638 132 51 25 chr5 59905846 59906319 -92630940 - Lx2 LINE L1 -2 6995 6511 6 1042 542 321 121 12 chr5 59906374 59906705 -92630554 - Lx8 LINE L1 -1 7472 7106 6 1042 195 100 0 0 chr5 59906749 59906779 -92630480 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 6 1042 268 328 52 52 chr5 59906780 59907286 -92629973 + Lx8 LINE L1 5721 6257 -1216 6 1042 232 214 71 0 chr5 59907937 59907993 -92629266 + CT-rich Low_complexity Low_complexity 3 62 0 6 1042 189 0 0 0 chr5 59908045 59908066 -92629193 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1042 34 24 0 0 chr5 59908812 59908853 -92628406 + AT_rich Low_complexity Low_complexity 1 41 0 6 1042 1261 172 0 8 chr5 59908971 59909211 -92628048 + Lx2A1 LINE L1 6767 7004 -4 6 1042 21 0 0 0 chr5 59909278 59909299 -92627960 + AT_rich Low_complexity Low_complexity 1 21 0 6 1042 21 0 0 0 chr5 59909493 59909514 -92627745 + AT_rich Low_complexity Low_complexity 1 21 0 6 1042 835 241 84 0 chr5 59909618 59909821 -92627438 - URR1A DNA MER1_type -3 223 4 6 1042 4687 170 29 10 chr5 59910591 59911464 -92625795 + Lx2A1 LINE L1 6115 7003 -5 6 1042 6848 110 39 8 chr5 59911549 59912926 -92624333 - L1_Mus3 LINE L1 -2 6636 5224 6 1042 345 289 76 34 chr5 59914132 59914250 -92623009 - Lx8 LINE L1 -179 7294 7172 6 1042 30 27 0 0 chr5 59914306 59914343 -92622916 + AT_rich Low_complexity Low_complexity 1 37 0 6 1042 12075 91 5 1 chr5 59914450 59916892 -92620367 + L1_Mus1 LINE L1 4113 6566 -1 6 1042 633 336 45 8 chr5 59917411 59917654 -92619605 + Tigger5 DNA MER2_type 12 263 -2143 6 1042 551 247 5 76 chr5 59917644 59917841 -92619418 + Tigger5 DNA MER2_type 2169 2351 -55 6 1042 412 225 34 23 chr5 59917921 59918098 -92619161 - Lx9 LINE L1 -2 7642 7464 6 1042 213 226 0 0 chr5 59918100 59918153 -92619106 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1042 487 171 90 0 chr5 59918160 59918271 -92618988 - Lx9 LINE L1 -153 7491 7371 6 1042 318 26 0 0 chr5 59919638 59919677 -92617582 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 6 1042 526 247 203 10 chr5 59920382 59920574 -92616685 - Lx5 LINE L1 0 7050 6822 6 1042 513 0 0 0 chr5 59920574 59920631 -92616628 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1042 553 0 0 0 chr5 59920700 59920762 -92616497 - L1Md_F3 LINE L1 -685 5899 5838 6 1042 675 0 0 0 chr5 59920862 59920937 -92616322 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 6 1042 305 374 113 0 chr5 59921817 59921932 -92615327 + RSINE1 SINE B4 25 152 -13 6 1042 255 31 0 0 chr5 59921939 59921971 -92615288 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1042 1267 265 18 81 chr5 59922003 59922713 -92614546 - RMER19C LTR ERVK 0 902 24 6 1042 204 40 0 0 chr5 59922713 59922738 -92614521 + (CAA)n Simple_repeat Simple_repeat 2 26 0 6 1042 403 309 60 120 chr5 59923641 59923891 -92613368 - B4A SINE B4 -49 243 9 6 1042 626 206 98 18 chr5 59924832 59924877 -92612382 + Lx LINE L1 6474 6518 -136 6 1042 189 0 0 0 chr5 59924877 59924898 -92612361 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 6 1042 626 206 98 18 chr5 59924898 59925015 -92612244 + Lx LINE L1 6519 6647 -7 6 1042 967 141 0 11 chr5 59925034 59925101 -92612158 + polypurine Low_complexity Low_complexity 3 68 0 6 1042 1217 85 0 6 chr5 59925101 59925278 -92611981 + (GAA)n Simple_repeat Simple_repeat 2 177 0 6 1042 967 141 0 11 chr5 59925278 59925344 -92611915 + polypurine Low_complexity Low_complexity 69 134 0 6 1042 1434 45 0 0 chr5 59925344 59925522 -92611737 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 6 1042 967 141 0 11 chr5 59925522 59925567 -92611692 + polypurine Low_complexity Low_complexity 135 179 0 6 1042 232 370 88 7 chr5 59925829 59925965 -92611294 + MER90 LTR ERV1 266 412 -163 6 1042 295 367 150 15 chr5 59927643 59928050 -92609209 + Lx8 LINE L1 6953 7414 -59 6 1042 23 92 0 0 chr5 59928226 59928291 -92608968 + AT_rich Low_complexity Low_complexity 1 65 0 6 1042 363 89 0 0 chr5 59928866 59928922 -92608337 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 6 1042 384 71 0 0 chr5 59928971 59929027 -92608232 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1042 200 35 35 0 chr5 59929206 59929235 -92608024 + (CAA)n Simple_repeat Simple_repeat 2 31 0 6 1042 372 269 82 37 chr5 59929415 59929550 -92607709 + ORR1D2 LTR MaLR 6 146 -224 6 1042 880 309 97 37 chr5 59929676 59930026 -92607233 + ORR1D1 LTR MaLR 4 374 0 6 1042 453 19 0 0 chr5 59930634 59930688 -92606571 + (GAAA)n Simple_repeat Simple_repeat 2 55 0 6 1042 762 165 11 32 chr5 59930697 59930980 -92606279 + GA-rich Low_complexity Low_complexity 1 276 0 6 1042 582 41 0 0 chr5 59930981 59931054 -92606205 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 6 1042 396 0 0 0 chr5 59931377 59931421 -92605838 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1042 23 0 0 0 chr5 59931784 59931807 -92605452 + AT_rich Low_complexity Low_complexity 1 23 0 6 1042 1212 307 4 84 chr5 59932646 59933108 -92604151 + Lx5 LINE L1 6615 7039 -11 6 1042 240 35 0 0 chr5 59933109 59933138 -92604121 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 1042 483 225 26 84 chr5 59934106 59934261 -92602998 + ORR1D1 LTR MaLR 1 146 -228 6 1042 7804 141 38 16 chr5 59934265 59935616 -92601643 - Lx2 LINE L1 -2 6995 5615 6 1042 867 270 27 0 chr5 59935616 59935635 -92601624 + ORR1D1 LTR MaLR 147 167 -207 6 1042 568 0 28 0 chr5 59935635 59935707 -92601552 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 6 1042 867 270 27 0 chr5 59935707 59935909 -92601350 + ORR1D1 LTR MaLR 168 373 -1 6 1042 448 30 30 0 chr5 59935918 59935984 -92601275 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 1042 239 230 74 74 chr5 59938357 59938479 -92598780 + Lx9 LINE L1 7522 7643 -1 6 1042 334 209 15 160 chr5 59938590 59938721 -92598538 + MT2B2 LTR ERVL 153 264 -320 6 1042 435 262 56 32 chr5 59938606 59938732 -92598527 + B1_Mur4 SINE Alu 1 129 -21 6 1042 1557 15 0 0 chr5 59938739 59938942 -92598317 + (GGGAGA)n Simple_repeat Simple_repeat 1 203 0 6 1042 24 0 0 0 chr5 59939381 59939405 -92597854 + AT_rich Low_complexity Low_complexity 1 24 0 6 1042 578 296 140 14 chr5 59939938 59940288 -92596971 - Lx9 LINE L1 0 7644 7251 6 1042 3368 98 56 2 chr5 59940600 59941082 -92596177 - L1_Mus4 LINE L1 -148 6488 5981 6 1042 2858 104 5 2 chr5 59941083 59941497 -92595762 + L1_Mus3 LINE L1 6224 6638 0 6 1042 27 29 0 0 chr5 59941735 59941769 -92595490 + AT_rich Low_complexity Low_complexity 1 34 0 6 1042 383 318 52 0 chr5 59942118 59942272 -92594987 - L3 LINE CR1 -484 4005 3844 6 1042 840 294 108 19 chr5 59942524 59942902 -92594357 + MTC LTR MaLR 2 413 -8 6 1042 201 154 0 0 chr5 59943356 59943395 -92593864 + T-rich Low_complexity Low_complexity 1 39 0 6 1042 22 0 0 0 chr5 59943679 59943701 -92593558 + AT_rich Low_complexity Low_complexity 1 22 0 6 1042 21 82 0 0 chr5 59944131 59944180 -92593079 + AT_rich Low_complexity Low_complexity 1 49 0 6 1042 235 220 51 0 chr5 59944320 59944379 -92592880 + Lx9 LINE L1 6659 6720 -924 6 1042 1527 222 55 18 chr5 59944379 59944764 -92592495 + RLTR12A LTR ERVK 170 568 0 6 1042 275 374 14 81 chr5 59944764 59944980 -92592279 - MTEb-int LTR MaLR -1366 214 14 6 1042 390 288 128 59 chr5 59945000 59945203 -92592056 - MTEb LTR MaLR 0 379 163 6 1042 504 0 0 0 chr5 59945687 59945743 -92591516 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1042 257 357 38 61 chr5 59946317 59946529 -92590730 - LTR52 LTR ERVL -211 210 4 6 1042 302 205 12 0 chr5 59947056 59947139 -92590120 + (CA)n Simple_repeat Simple_repeat 2 85 0 6 1042 384 174 14 0 chr5 59947139 59947208 -92590051 + HAL1-3A_ME LINE L1 1976 2045 -813 6 1042 24 0 0 0 chr5 59948213 59948237 -92589022 + AT_rich Low_complexity Low_complexity 1 24 0 6 1042 220 370 74 25 chr5 59948303 59948425 -92588834 - B1F SINE Alu 0 149 22 6 1042 261 109 0 0 chr5 59948439 59948485 -92588774 + (T)n Simple_repeat Simple_repeat 1 46 0 6 1042 338 231 38 19 chr5 59948734 59948840 -92588419 - RMER1B Other Other -16 1050 943 6 1042 1653 272 59 29 chr5 59948950 59949735 -92587524 - RMER1B Other Other -138 928 8 6 1042 22 35 0 0 chr5 59950413 59950442 -92586817 + AT_rich Low_complexity Low_complexity 1 29 0 6 1042 621 184 14 7 chr5 59950457 59950599 -92586660 + Lx LINE L1 6510 6652 -2 6 1042 2553 88 90 0 chr5 59950613 59950990 -92586269 - IAPLTR2a LTR ERVK 0 411 1 6 1042 10168 34 0 0 chr5 59950990 59952202 -92585057 - L1Md_F2 LINE L1 -290 5593 4382 6 1042 7824 44 12 1 chr5 59952202 59953174 -92584085 + L1Md_F2 LINE L1 5597 6579 -3 6 1042 278 297 101 29 chr5 59953425 59953633 -92583626 + L1M3e LINE L1 48 270 -6760 6 1042 387 0 0 0 chr5 59954020 59954063 -92583196 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1042 201 141 91 0 chr5 59954582 59954681 -92582578 + (TA)n Simple_repeat Simple_repeat 2 109 0 6 1042 26 0 0 0 chr5 59954706 59954732 -92582527 + AT_rich Low_complexity Low_complexity 1 26 0 7 1042 24 67 0 0 chr5 59955203 59955248 -92582011 + AT_rich Low_complexity Low_complexity 1 45 0 7 1042 1006 93 0 7 chr5 59955492 59955633 -92581626 + B1_Mus2 SINE Alu 1 140 -7 7 1042 572 43 0 0 chr5 59955637 59955706 -92581553 + L1_Mus1 LINE L1 6402 6470 -97 7 1042 361 169 0 15 chr5 59955696 59955762 -92581497 - L1_Mus1 LINE L1 -172 6395 6331 7 1042 228 149 0 113 chr5 59955736 59955789 -92581470 - L1Md_F LINE L1 -6332 187 141 7 1042 4241 195 77 53 chr5 59956609 59957005 -92580254 - RLTR25B LTR ERVK 0 1028 650 7 1042 4812 101 48 0 chr5 59957005 59957691 -92579568 - Lx3_Mus LINE L1 -8 7001 6283 7 1042 4241 195 77 53 chr5 59957691 59958298 -92578961 - RLTR25B LTR ERVK -379 649 2 7 1042 323 392 17 35 chr5 59958432 59958604 -92578655 + MLT1H LTR MaLR 3 171 -378 7 1042 201 316 64 44 chr5 59959822 59959981 -92577278 + MIRm SINE MIR 35 203 -73 7 1042 9027 2 0 0 chr5 59960881 59962340 -92574919 - L1Md_A LINE L1 0 6582 5124 7 1042 4790 48 0 0 chr5 59962340 59962924 -92574335 + L1Md_T LINE L1 5999 6582 0 7 1042 25136 103 8 2 chr5 59962929 59963808 -92573451 + L1Md_F2 LINE L1 964 1848 -4035 7 1042 3184 29 39 0 chr5 59963808 59964189 -92573070 - MTA_Mm LTR MaLR 0 396 1 7 1042 9385 24 1 1 chr5 59964191 59965287 -92571972 - MTA_Mm-int LTR MaLR -2 1096 1 7 1042 3121 34 39 0 chr5 59965287 59965668 -92571591 - MTA_Mm LTR MaLR 0 396 1 7 1042 25136 93 7 3 chr5 59965668 59968678 -92568581 + L1Md_F2 LINE L1 1849 4874 -1009 7 1042 7236 62 4 3 chr5 59968679 59969610 -92567649 - L1Md_F2 LINE L1 0 6582 5651 7 1042 5203 88 20 13 chr5 59969579 59970328 -92566931 + L1Md_F2 LINE L1 4833 5586 -297 7 1042 7140 75 26 4 chr5 59970329 59971302 -92565957 + L1Md_F2 LINE L1 5588 6581 -1 7 1042 30 0 0 0 chr5 59971851 59971881 -92565378 + AT_rich Low_complexity Low_complexity 1 30 0 7 1042 23 0 0 0 chr5 59971982 59972005 -92565254 + AT_rich Low_complexity Low_complexity 1 23 0 7 1042 23 0 0 0 chr5 59972311 59972334 -92564925 + AT_rich Low_complexity Low_complexity 1 23 0 7 1042 5552 166 1 14 chr5 59972715 59973690 -92563569 + Lx LINE L1 5686 6647 -7 7 1042 389 371 67 17 chr5 59975100 59975132 -92562127 - B3 SINE B2 -21 195 166 7 1042 417 70 0 0 chr5 59975132 59975189 -92562070 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1042 389 371 67 17 chr5 59975189 59975334 -92561925 - B3 SINE B2 -51 165 9 7 1042 525 144 0 0 chr5 59975357 59975447 -92561812 + (TG)n Simple_repeat Simple_repeat 1 90 0 7 1042 40 37 0 0 chr5 59976424 59976478 -92560781 + AT_rich Low_complexity Low_complexity 1 54 0 7 1042 648 263 5 89 chr5 59977055 59977268 -92559991 - MER57F LTR ERV1 -241 195 1 7 1042 247 319 69 69 chr5 59977362 59977463 -92559796 - MLT1A0 LTR MaLR -174 191 91 7 1042 1176 232 57 37 chr5 59977500 59977800 -92559459 + ORR1B1 LTR MaLR 82 387 -7 7 1042 2115 172 54 22 chr5 59977800 59978167 -92559092 + Lx3A LINE L1 6476 6839 -142 7 1042 2937 192 48 10 chr5 59978167 59978776 -92558483 + Lx2 LINE L1 6365 6996 -1 7 1042 2115 172 54 22 chr5 59978776 59978801 -92558458 + Lx3A LINE L1 6840 6873 -108 7 1042 1245 96 0 0 chr5 59978801 59978979 -92558280 + (GAA)n Simple_repeat Simple_repeat 1 178 0 7 1042 2115 172 54 22 chr5 59978979 59979047 -92558212 + Lx3A LINE L1 6874 6951 -30 7 1042 1464 284 71 9 chr5 59979059 59979493 -92557766 + Lx5 LINE L1 6587 7047 -3 7 1042 25 75 0 0 chr5 59979566 59979619 -92557640 + AT_rich Low_complexity Low_complexity 1 53 0 7 1042 54 49 0 0 chr5 59980845 59980927 -92556332 + AT_rich Low_complexity Low_complexity 1 82 0 7 1042 288 323 31 0 chr5 59980927 59981023 -92556236 - Lx8 LINE L1 -153 7320 7222 7 1042 503 276 85 25 chr5 59981026 59981227 -92556032 + B3 SINE B2 4 216 0 7 1042 876 61 0 0 chr5 59981320 59981435 -92555824 + (TA)n Simple_repeat Simple_repeat 1 115 0 7 1042 288 340 10 0 chr5 59981454 59981557 -92555702 - Lx8 LINE L1 -367 7106 7003 7 1042 279 41 40 20 chr5 59982322 59982372 -92554887 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 7 1042 7282 169 72 13 chr5 59982405 59984612 -92552647 - Lx2B LINE L1 -7 6993 4637 7 1042 8823 13 0 0 chr5 59984606 59985712 -92551547 - L1Md_A LINE L1 0 6582 5477 7 1042 1091 138 52 9 chr5 59985708 59985920 -92551339 - Lx2B LINE L1 -1236 4650 4430 7 1042 1170 317 95 21 chr5 59986147 59986409 -92550850 - Lx8 LINE L1 -358 7115 6847 7 1042 1493 48 0 0 chr5 59986409 59986596 -92550663 - L1_Mus2 LINE L1 0 6566 6380 7 1042 1170 317 95 21 chr5 59986596 59986733 -92550526 - Lx8 LINE L1 -627 6846 6696 7 1042 2729 66 26 3 chr5 59986733 59987112 -92550147 - L1_Mus2 LINE L1 0 6566 6179 7 1042 1170 317 95 21 chr5 59987112 59987288 -92549971 - Lx8 LINE L1 -778 6695 6497 7 1042 487 295 40 0 chr5 59987386 59987535 -92549724 - Lx8 LINE L1 -1117 6356 6202 7 1042 611 139 43 0 chr5 59987565 59987680 -92549579 + MusHAL1 LINE L1 1942 2061 -651 7 1042 243 0 0 0 chr5 59987986 59988013 -92549246 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1042 22 35 0 0 chr5 59988924 59988953 -92548306 + AT_rich Low_complexity Low_complexity 1 29 0 7 1042 718 158 120 0 chr5 59990209 59990342 -92546917 - RLTR20B3 LTR ERVK -427 150 2 7 1042 25 0 0 0 chr5 59990690 59990715 -92546544 + AT_rich Low_complexity Low_complexity 1 25 0 7 1042 21 36 0 0 chr5 59991161 59991189 -92546070 + AT_rich Low_complexity Low_complexity 1 28 0 7 1042 616 378 10 0 chr5 59992065 59992364 -92544895 - Lx9 LINE L1 -619 7025 6724 7 1042 298 275 9 56 chr5 59993206 59993314 -92543945 - MLT1A0 LTR MaLR -5 360 258 7 1042 265 339 31 16 chr5 59993629 59993758 -92543501 - RMER15 LTR ERVL -71 504 374 7 1042 21 0 0 0 chr5 59995448 59995469 -92541790 + AT_rich Low_complexity Low_complexity 1 21 0 7 1042 390 144 196 9 chr5 59995520 59995632 -92541627 - Lx9 LINE L1 0 7644 7512 7 1042 21 0 0 0 chr5 59995784 59995805 -92541454 + AT_rich Low_complexity Low_complexity 1 21 0 7 1042 207 214 0 0 chr5 59996083 59996125 -92541134 + A-rich Low_complexity Low_complexity 1 42 0 7 1042 192 40 0 0 chr5 59996139 59996164 -92541095 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1042 1269 253 30 14 chr5 59996164 59996526 -92540733 - Lx9 LINE L1 -157 7487 7120 7 1042 345 329 35 81 chr5 59996532 59996704 -92540555 + RSINE1 SINE B4 2 165 0 7 1042 227 368 77 67 chr5 59996704 59996727 -92540532 + B3A SINE B2 1 197 -1 7 1042 204 40 0 0 chr5 59996783 59996808 -92540451 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1042 258 32 0 0 chr5 59996810 59996841 -92540418 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1042 420 152 20 10 chr5 59997512 59997612 -92539647 + (TAGA)n Simple_repeat Simple_repeat 1 101 0 7 1042 233 309 74 66 chr5 59998055 59998409 -92538850 - L1_Mur3 LINE L1 -670 5621 5254 7 1042 355 345 33 41 chr5 59998575 59998820 -92538439 + Lx8 LINE L1 7044 7286 -410 7 1042 263 310 0 22 chr5 59998950 59999039 -92538220 - Lx6 LINE L1 -269 7191 7105 7 1042 3446 99 4 5 chr5 59999034 60000000 -92537259 + L1Md_A LINE L1 610 1577 -4309 7 1042 31350 53 1 2 chr5 60000002 60004017 -92533242 + L1Md_F3 LINE L1 1577 5586 -297 1 1042 7766 39 20 1 chr5 60004017 60004984 -92532275 + L1Md_F3 LINE L1 5587 6571 -13 1 1042 243 146 0 0 chr5 60005596 60005637 -92531622 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1042 434 174 0 7 chr5 60006076 60006218 -92531041 + GA-rich Low_complexity Low_complexity 1 141 0 3 1042 21 0 0 0 chr5 60006575 60006596 -92530663 + AT_rich Low_complexity Low_complexity 1 21 0 4 1042 243 370 67 28 chr5 60006658 60006836 -92530423 + Lx8 LINE L1 7166 7350 -123 5 1042 351 44 0 0 chr5 60009736 60009781 -92527478 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1042 2036 205 75 0 chr5 60010321 60010721 -92526538 + RMER19B LTR ERVK 460 889 -13 7 1042 26 0 0 0 chr5 60011326 60011352 -92525907 + AT_rich Low_complexity Low_complexity 1 26 0 8 1042 22 0 0 0 chr5 60012155 60012177 -92525082 + AT_rich Low_complexity Low_complexity 1 22 0 9 1042 3465 181 91 7 chr5 60012437 60013129 -92524130 + Lx4A LINE L1 6305 7054 -4 1 1042 1359 68 26 10 chr5 60013346 60013538 -92523721 + B2_Mm2 SINE B2 1 195 0 1 1042 706 291 14 33 chr5 60013979 60014192 -92523067 + MTE2b LTR MaLR 1 209 -170 1 1042 1101 84 0 0 chr5 60014329 60014471 -92522788 - B1_Mus1 SINE Alu -5 143 2 1 1042 246 339 83 93 chr5 60014477 60014682 -92522577 + MLT1A0 LTR MaLR 40 242 -123 1 1042 1191 62 0 0 chr5 60014805 60014950 -92522309 + B1_Mm SINE Alu 1 145 -2 1 1042 21 0 0 0 chr5 60014969 60014990 -92522269 + AT_rich Low_complexity Low_complexity 1 21 0 1 1042 458 292 7 49 chr5 60015804 60015948 -92521311 + B1_Mur3 SINE Alu 3 140 -9 1 1042 450 147 0 13 chr5 60015953 60016029 -92521230 + RMER1C Other Other 992 1066 -276 1 1042 1590 149 88 3 chr5 60016013 60016387 -92520872 + Lx3C LINE L1 6501 6974 -2 1 1042 1113 236 51 10 chr5 60016397 60016550 -92520709 + RMER1C Other Other 1034 1188 -154 2 1042 216 0 0 0 chr5 60016550 60016574 -92520685 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1042 1113 236 51 10 chr5 60016574 60016715 -92520544 + RMER1C Other Other 1189 1340 -2 2 1042 370 295 98 30 chr5 60016886 60017019 -92520240 - MLT1A0 LTR MaLR -4 361 220 2 1042 207 0 0 0 chr5 60019328 60019351 -92517908 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1042 2068 214 16 21 chr5 60019368 60019921 -92517338 - L1_Mur3 LINE L1 -836 5310 4734 2 1042 192 77 0 0 chr5 60020563 60020589 -92516670 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1042 252 86 0 0 chr5 60020604 60020639 -92516620 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 2 1042 1112 73 0 0 chr5 60021106 60021243 -92516016 + B1_Mm SINE Alu 1 137 -10 2 1042 503 16 0 15 chr5 60021243 60021308 -92515951 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 2 1042 21 36 0 0 chr5 60021476 60021504 -92515755 + AT_rich Low_complexity Low_complexity 1 28 0 2 1042 1633 99 4 4 chr5 60021607 60021839 -92515420 + L1_Mus2 LINE L1 6333 6564 -2 3 1042 2711 77 3 0 chr5 60022087 60022452 -92514807 + L1_Mus1 LINE L1 6201 6566 -1 3 1042 549 30 0 0 chr5 60023216 60023283 -92513976 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1042 21 0 0 0 chr5 60023340 60023361 -92513898 + AT_rich Low_complexity Low_complexity 1 21 0 3 1042 213 239 0 0 chr5 60023379 60023425 -92513834 + (CATA)n Simple_repeat Simple_repeat 3 48 0 3 1042 4002 108 15 2 chr5 60024516 60025103 -92512156 + Lx LINE L1 6053 6647 -7 3 1042 525 71 0 0 chr5 60025371 60025441 -92511818 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1042 25 51 0 0 chr5 60025493 60025532 -92511727 + AT_rich Low_complexity Low_complexity 1 39 0 3 1042 368 266 75 0 chr5 60025616 60025710 -92511549 + Lx7 LINE L1 7199 7299 -397 3 1042 615 14 0 0 chr5 60026096 60026168 -92511091 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 1042 1134 96 0 0 chr5 60026627 60026784 -92510475 - Lx3C LINE L1 -1116 5860 5704 4 1042 270 136 0 0 chr5 60026877 60026921 -92510338 + (CTTG)n Simple_repeat Simple_repeat 4 47 0 4 1042 306 0 0 0 chr5 60027498 60027532 -92509727 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1042 785 71 0 9 chr5 60027543 60027657 -92509602 + (TA)n Simple_repeat Simple_repeat 1 113 0 4 1042 987 88 0 7 chr5 60027722 60027904 -92509355 + L1_Mus4 LINE L1 6479 6636 0 4 1042 336 64 0 0 chr5 60028000 60028047 -92509212 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1042 531 0 0 0 chr5 60028838 60028897 -92508362 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1042 369 0 0 0 chr5 60028897 60028937 -92508322 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1042 180 111 0 0 chr5 60029073 60029100 -92508159 + (CATA)n Simple_repeat Simple_repeat 2 28 0 4 1042 516 45 0 0 chr5 60029103 60029170 -92508089 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1042 1083 304 94 22 chr5 60029517 60030008 -92507251 + RMER5 LTR ERV1 1 526 -8 5 1042 256 237 12 84 chr5 60030236 60030319 -92506940 - Lx9 LINE L1 -272 7372 7296 5 1042 811 261 168 21 chr5 60030535 60030852 -92506407 + MTD LTR MaLR 5 365 -14 5 1043 22 35 0 0 chr5 60031556 60031585 -92505674 + AT_rich Low_complexity Low_complexity 1 29 0 5 1043 336 269 75 11 chr5 60031606 60031700 -92505559 - RMER5 LTR ERV1 -18 516 417 5 1043 767 265 120 41 chr5 60032768 60033110 -92504149 - ORR1D2 LTR MaLR 0 370 2 5 1043 6403 140 36 6 chr5 60033412 60034634 -92502625 - Lx LINE L1 -7 6647 5416 5 1043 414 0 0 0 chr5 60034634 60034680 -92502579 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1043 3472 173 78 25 chr5 60034680 60034929 -92502330 - Lx LINE L1 -468 5415 5120 5 1043 351 0 0 0 chr5 60035006 60035045 -92502214 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1043 37969 30 0 0 chr5 60035082 60041505 -92495754 - L1Md_T LINE L1 0 6585 66 5 1043 822 295 11 30 chr5 60042207 60042476 -92494783 + RMER5 LTR ERV1 1 264 -270 6 1043 748 203 7 0 chr5 60042482 60042609 -92494650 + B1_Mm SINE Alu 9 136 -11 6 1043 450 0 0 0 chr5 60042609 60042659 -92494600 + (TAA)n Simple_repeat Simple_repeat 2 51 0 6 1043 543 271 116 37 chr5 60042671 60042912 -92494347 + RMER5 LTR ERV1 272 531 -3 6 1043 257 331 46 23 chr5 60043071 60043201 -92494058 - MLT1A LTR MaLR -241 133 1 6 1043 1148 273 27 25 chr5 60043327 60043695 -92493564 + ORR1D1 LTR MaLR 6 374 0 6 1043 2392 72 89 0 chr5 60045116 60045521 -92491738 - L1VL4 LINE L1 -2540 1019 573 6 1043 1998 112 0 0 chr5 60045529 60045815 -92491444 + Lx2 LINE L1 6358 6643 -354 6 1043 1172 162 4 22 chr5 60045815 60045925 -92491334 + Lx2 LINE L1 6775 6884 -113 6 1043 2788 94 17 12 chr5 60045925 60046344 -92490915 - BGLII LTR ERVK 0 421 1 6 1043 1172 162 4 22 chr5 60046344 60046460 -92490799 + Lx2 LINE L1 6885 6997 0 6 1043 896 106 43 0 chr5 60046471 60046612 -92490647 + B1_Mus1 SINE Alu 2 148 0 6 1043 23 92 0 0 chr5 60046700 60046765 -92490494 + AT_rich Low_complexity Low_complexity 1 65 0 6 1043 29 0 0 0 chr5 60047274 60047303 -92489956 + AT_rich Low_complexity Low_complexity 1 29 0 7 1043 381 322 65 57 chr5 60048035 60048323 -92488936 + MER67D LTR ERV1 86 416 -295 7 1043 673 117 8 8 chr5 60048390 60048511 -92488748 - Lx2 LINE L1 0 6997 6877 7 1043 327 70 0 0 chr5 60048512 60048555 -92488704 + Lx2 LINE L1 6578 6620 -377 7 1043 503 277 16 43 chr5 60048729 60048914 -92488345 + B3A SINE B2 2 181 -17 7 1043 483 33 0 0 chr5 60048914 60048975 -92488284 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1043 1099 52 0 0 chr5 60049578 60049712 -92487547 + B1_Mus2 SINE Alu 1 134 -13 7 1043 576 53 0 0 chr5 60049713 60049789 -92487470 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 7 1043 1012 284 69 50 chr5 60050284 60050647 -92486612 + ORR1D2 LTR MaLR 1 370 0 7 1043 441 0 0 0 chr5 60050766 60050815 -92486444 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1043 225 0 0 0 chr5 60050815 60050839 -92486420 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1043 2960 60 0 13 chr5 60050859 60051249 -92486010 + L1Md_F2 LINE L1 6187 6571 -11 8 1043 25 0 0 0 chr5 60052096 60052121 -92485138 + AT_rich Low_complexity Low_complexity 1 25 0 8 1043 642 134 7 22 chr5 60052121 60052258 -92485001 - L1_Mus3 LINE L1 -5 6633 6499 8 1043 1429 288 58 25 chr5 60052454 60053023 -92484236 - Lx9 LINE L1 -390 7254 6667 8 1043 396 0 0 0 chr5 60053069 60053113 -92484146 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1043 399 41 0 0 chr5 60053113 60053161 -92484098 + (TA)n Simple_repeat Simple_repeat 1 49 0 8 1043 27 49 0 0 chr5 60053242 60053283 -92483976 + AT_rich Low_complexity Low_complexity 1 41 0 8 1043 540 0 0 0 chr5 60053564 60053624 -92483635 + (CAATT)n Simple_repeat Simple_repeat 5 64 0 8 1043 27 0 0 0 chr5 60053762 60053789 -92483470 + AT_rich Low_complexity Low_complexity 1 27 0 8 1043 211 246 28 28 chr5 60054697 60054768 -92482491 + CT-rich Low_complexity Low_complexity 2 72 0 9 1043 29 0 0 0 chr5 60055038 60055067 -92482192 + AT_rich Low_complexity Low_complexity 1 29 0 9 1043 207 85 20 41 chr5 60055083 60055132 -92482127 + (TA)n Simple_repeat Simple_repeat 1 48 0 9 1043 23 0 0 0 chr5 60055392 60055415 -92481844 + AT_rich Low_complexity Low_complexity 1 23 0 9 1043 21 0 0 0 chr5 60056468 60056489 -92480770 + AT_rich Low_complexity Low_complexity 1 21 0 9 1043 2823 90 25 10 chr5 60056892 60057295 -92479964 - L1Md_F2 LINE L1 -12 6570 6162 9 1043 396 302 63 29 chr5 60058496 60058670 -92478589 - Lx8 LINE L1 -1050 6423 6244 9 1043 37 39 0 0 chr5 60058698 60058749 -92478510 + AT_rich Low_complexity Low_complexity 1 51 0 9 1043 291 93 0 0 chr5 60059213 60059256 -92478003 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1043 924 373 60 4 chr5 60060358 60060859 -92476400 - Lx8 LINE L1 -132 7341 6813 9 1043 441 0 0 0 chr5 60060873 60060922 -92476337 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1043 916 339 55 32 chr5 60060948 60061515 -92475744 - Lx8 LINE L1 -722 6751 6172 9 1043 203 204 19 0 chr5 60061516 60061570 -92475689 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1043 1691 187 36 87 chr5 60061604 60062019 -92475240 + ORR1B1 LTR MaLR 1 394 0 1 1043 403 316 75 34 chr5 60062023 60062315 -92474944 + Lx7 LINE L1 5605 5908 -1788 1 1043 28 0 0 0 chr5 60062477 60062505 -92474754 + AT_rich Low_complexity Low_complexity 1 28 0 1 1043 25 0 0 0 chr5 60062524 60062549 -92474710 + AT_rich Low_complexity Low_complexity 1 25 0 1 1043 220 116 0 65 chr5 60062795 60062841 -92474418 + T-rich Low_complexity Low_complexity 2 44 0 1 1043 224 361 86 43 chr5 60062948 60063087 -92474172 + B1F1 SINE Alu 1 145 -4 1 1043 448 270 124 14 chr5 60063055 60063199 -92474060 + ID_B1 SINE B4 56 215 -77 1 1043 192 40 0 0 chr5 60063199 60063224 -92474035 + (CAA)n Simple_repeat Simple_repeat 1 25 0 1 1043 320 355 110 6 chr5 60063224 60063252 -92474007 + B4A SINE B4 216 245 -47 1 1043 617 274 114 59 chr5 60063384 60063586 -92473673 - ID_B1 SINE B4 -11 213 1 1 1043 416 281 43 26 chr5 60063766 60063883 -92473376 + B1F1 SINE Alu 1 119 -30 1 1043 324 0 0 0 chr5 60063896 60063932 -92473327 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 1 1043 332 283 111 0 chr5 60064063 60064162 -92473097 - PB1D10 SINE Alu -7 110 1 1 1043 211 259 116 105 chr5 60064079 60064174 -92473085 - ID_B1 SINE B4 -49 175 80 1 1043 252 0 0 0 chr5 60064363 60064391 -92472868 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1043 281 117 0 16 chr5 60064411 60064472 -92472787 + (TTTTA)n Simple_repeat Simple_repeat 1 60 0 1 1043 281 323 54 0 chr5 60064472 60064565 -92472694 - PB1D10 SINE Alu -6 111 14 1 1043 21 36 0 0 chr5 60065463 60065491 -92471768 + AT_rich Low_complexity Low_complexity 1 28 0 1 1043 9744 174 20 23 chr5 60065554 60066201 -92471058 + Lx3C LINE L1 3958 4629 -1257 1 1043 3394 25 5 0 chr5 60066201 60066595 -92470664 + MTA_Mm LTR MaLR 1 396 0 1 1043 9744 179 27 18 chr5 60066595 60068939 -92468320 + Lx3C LINE L1 4630 6966 -10 1 1043 284 383 14 7 chr5 60070020 60070162 -92467097 + Lx8 LINE L1 7038 7180 -293 1 1043 310 331 86 7 chr5 60071426 60071578 -92465681 - Lx8 LINE L1 -234 7239 7076 1 1043 8081 55 1 1 chr5 60071751 60073394 -92463865 - L1Md_F2 LINE L1 -2 6580 4938 1 1043 3079 66 0 8 chr5 60074858 60075257 -92462002 - MTA_Mm LTR MaLR 0 396 1 1 1043 230 355 53 35 chr5 60075430 60075544 -92461715 - MLT1D LTR MaLR -69 436 321 1 1043 252 59 39 19 chr5 60075814 60075866 -92461393 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 1 1043 1110 318 94 54 chr5 60075874 60076619 -92460640 + Lx8 LINE L1 6699 7473 0 1 1043 1096 83 7 0 chr5 60077054 60077199 -92460060 + B1_Mus2 SINE Alu 1 146 -1 1 1043 331 312 62 31 chr5 60078277 60078439 -92458820 + LTR40a LTR ERVL 3 169 -350 1 1043 1125 75 0 13 chr5 60078758 60078907 -92458352 + B1_Mm SINE Alu 1 147 0 1 1043 384 22 0 0 chr5 60078912 60078957 -92458302 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1043 695 330 43 27 chr5 60079026 60079325 -92457934 + MT2A LTR ERVL 1 304 -229 1 1043 279 0 0 0 chr5 60079331 60079362 -92457897 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1043 750 152 0 0 chr5 60079403 60079628 -92457631 + (TA)n Simple_repeat Simple_repeat 1 225 0 1 1043 2227 196 71 11 chr5 60079648 60080098 -92457161 - RLTR19 LTR ERVK -15 484 8 1 1043 1535 169 40 58 chr5 60080102 60080429 -92456830 + ORR1A4 LTR MaLR 1 321 -8 1 1043 2009 222 35 47 chr5 60081634 60082311 -92454948 - RLTR31_Mm LTR ERVK -26 558 1 1 1043 2844 242 64 53 chr5 60082311 60082543 -92454716 - Lx7 LINE L1 -68 7628 7408 1 1043 324 0 0 0 chr5 60082543 60082579 -92454680 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1 1043 2844 242 64 53 chr5 60082579 60083333 -92453926 - Lx7 LINE L1 -289 7407 6631 1 1043 273 23 0 0 chr5 60084688 60084732 -92452527 - L1Md_F2 LINE L1 0 6582 6539 1 1043 444 37 0 0 chr5 60084790 60084844 -92452415 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 1 1043 7143 80 1 14 chr5 60084844 60085803 -92451456 - L1Md_F2 LINE L1 -19 6563 5617 1 1043 2402 139 64 3 chr5 60086099 60086150 -92451109 - Lx3_Mus LINE L1 -75 6934 6868 1 1043 288 0 0 0 chr5 60086150 60086182 -92451077 + (CACCC)n Simple_repeat Simple_repeat 3 34 0 1 1043 2402 136 59 2 chr5 60086182 60086533 -92450726 - Lx3_Mus LINE L1 -142 6867 6440 1 1043 5298 146 58 6 chr5 60086528 60087474 -92449785 + Lx3_Mus LINE L1 5971 6965 -44 1 1043 401 333 0 18 chr5 60087475 60087588 -92449671 + B4A SINE B4 182 292 0 1 1043 511 329 59 56 chr5 60087747 60088075 -92449184 + MLT1A0 LTR MaLR 6 336 -29 1 1043 2120 233 91 40 chr5 60088075 60088268 -92448991 + RMER19A LTR ERVK 1 189 -548 1 1043 509 55 14 0 chr5 60088268 60088341 -92448918 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1043 2120 233 91 40 chr5 60088341 60088848 -92448411 + RMER19A LTR ERVK 190 736 -1 1 1043 511 329 59 56 chr5 60088848 60088876 -92448383 + MLT1A0 LTR MaLR 337 363 -2 1 1043 393 22 0 0 chr5 60089403 60089449 -92447810 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 1043 2858 127 0 13 chr5 60089597 60090059 -92447200 - L1_Mus4 LINE L1 -1 6635 6180 1 1043 289 323 112 8 chr5 60090095 60090229 -92447030 - B1F2 SINE Alu -1 148 1 1 1043 759 78 0 0 chr5 60092070 60092173 -92445086 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 1 1043 1038 93 7 0 chr5 60092177 60092317 -92444942 - B1_Mus1 SINE Alu -7 141 1 1 1043 376 353 38 0 chr5 60092383 60092516 -92444743 - MTEb LTR MaLR -241 138 1 1 1043 661 359 38 31 chr5 60092516 60092832 -92444427 - MTEb-int LTR MaLR -24 1556 1239 1 1043 237 139 0 0 chr5 60092856 60092899 -92444360 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1043 376 396 31 0 chr5 60093021 60093213 -92444046 - MTEb-int LTR MaLR -342 1238 1041 1 1043 1763 230 5 29 chr5 60093214 60093599 -92443660 - RLTR14 LTR ERV1 0 382 7 1 1043 279 275 0 0 chr5 60093675 60093744 -92443515 - MTD LTR MaLR -277 142 74 1 1043 285 135 32 57 chr5 60093758 60093915 -92443344 + (TTATA)n Simple_repeat Simple_repeat 4 156 0 1 1043 886 79 0 0 chr5 60093918 60094044 -92443215 - L1_Mus2 LINE L1 -1 6565 6440 1 1043 606 325 161 47 chr5 60094123 60094165 -92443094 - MTEb-int LTR MaLR -815 765 734 1 1043 218 29 59 0 chr5 60094165 60094199 -92443060 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1043 606 325 161 47 chr5 60094199 60094540 -92442719 - MTEb-int LTR MaLR -847 733 338 1 1043 272 246 46 62 chr5 60094540 60094670 -92442589 - Lx7 LINE L1 -10 7686 7559 1 1043 402 221 0 65 chr5 60094689 60094768 -92442491 + B1_Mus2 SINE Alu 57 133 -14 1 1043 405 0 0 0 chr5 60094768 60094813 -92442446 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1043 402 221 0 65 chr5 60094813 60094825 -92442434 + B1_Mus2 SINE Alu 134 142 -5 1 1043 1505 276 46 76 chr5 60094939 60095125 -92442134 - Lx7 LINE L1 -170 7526 7361 1 1043 377 100 0 0 chr5 60095125 60095185 -92442074 + L1_Mus2 LINE L1 6507 6566 0 1 1043 1505 276 46 76 chr5 60095185 60095633 -92441626 - Lx7 LINE L1 -336 7360 6911 1 1043 264 200 15 44 chr5 60095630 60095698 -92441561 + Lx7 LINE L1 6840 6905 -791 1 1043 4018 4 0 0 chr5 60095734 60096298 -92440961 - L1Md_A LINE L1 -543 6039 5476 1 1043 5089 5 0 0 chr5 60096298 60096907 -92440352 + L1Md_A LINE L1 6015 6582 0 1 1043 5367 89 14 4 chr5 60096912 60097670 -92439589 + L1Md_F2 LINE L1 4821 5586 -297 1 1043 7289 70 9 25 chr5 60097670 60098670 -92438589 + L1Md_F2 LINE L1 5587 6570 -12 1 1043 365 320 114 103 chr5 60098670 60099039 -92438220 - MTD LTR MaLR -46 373 1 1 1043 447 360 33 11 chr5 60099052 60099232 -92438027 - MTEb LTR MaLR -195 184 1 1 1043 278 301 105 0 chr5 60099417 60099570 -92437689 - MIR SINE MIR -13 249 81 1 1043 1161 15 0 0 chr5 60099707 60099842 -92437417 + (CA)n Simple_repeat Simple_repeat 2 136 0 1 1043 594 278 35 8 chr5 60099851 60100104 -92437155 - ORR1D1 LTR MaLR -84 300 1 1 1043 230 309 0 14 chr5 60100154 60100223 -92437036 - MTEb LTR MaLR -18 361 294 1 1043 338 365 10 0 chr5 60100592 60100696 -92436563 - B1_Mur1 SINE Alu -30 119 15 1 1043 767 129 0 15 chr5 60101353 60101487 -92435772 - L1Md_F2 LINE L1 -12 6570 6439 1 1043 5781 73 22 12 chr5 60101494 60102893 -92434366 + L1Md_F2 LINE L1 4776 6307 -275 1 1043 619 137 16 0 chr5 60104303 60104427 -92432832 + (CA)n Simple_repeat Simple_repeat 1 126 0 1 1043 336 282 72 60 chr5 60105421 60105670 -92431589 - L1MB5 LINE L1 -8 6166 5915 1 1043 521 314 98 83 chr5 60106486 60106945 -92430314 + RMER20B LTR ERVK 130 595 -32 1 1043 384 22 0 0 chr5 60107356 60107401 -92429858 + (A)n Simple_repeat Simple_repeat 1 45 0 1 1043 254 307 103 30 chr5 60107505 60107737 -92429522 - L1MB5 LINE L1 -418 5771 5523 1 1043 1635 96 58 8 chr5 60107809 60108052 -92429207 + L1Md_F2 LINE L1 6314 6568 -14 1 1043 28082 76 3 0 chr5 60108226 60114539 -92422720 - L1Md_F2 LINE L1 -12 6570 238 1 1043 1761 73 34 0 chr5 60114799 60115032 -92422227 - L1_Mus1 LINE L1 0 6567 6327 1 1043 877 280 52 32 chr5 60115195 60115379 -92421880 - Lx9 LINE L1 -1 7643 7449 1 1043 303 28 0 0 chr5 60115379 60115415 -92421844 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1043 452 18 0 17 chr5 60115415 60115473 -92421786 + (GA)n Simple_repeat Simple_repeat 1 57 0 1 1043 2086 247 60 22 chr5 60115473 60116240 -92421019 - Lx9 LINE L1 -196 7448 6345 1 1043 285 303 0 68 chr5 60118132 60118323 -92418936 + CT-rich Low_complexity Low_complexity 2 179 0 1 1043 207 0 0 0 chr5 60119282 60119305 -92417954 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1043 1401 234 79 35 chr5 60119822 60120251 -92417008 - RMER6C LTR ERVK 0 690 243 1 1043 530 186 0 1 chr5 60120251 60120369 -92416890 + L1_Mur2 LINE L1 2241 2367 -3513 1 1043 969 149 0 7 chr5 60120385 60120534 -92416725 + B1_Mus1 SINE Alu 1 148 0 1 1043 214 0 0 100 chr5 60120551 60120591 -92416668 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 1 1043 702 133 0 0 chr5 60120610 60120723 -92416536 + (GGAA)n Simple_repeat Simple_repeat 4 116 0 1 1043 1205 207 11 14 chr5 60120726 60121001 -92416258 + L1_Mur2 LINE L1 2358 2631 -3246 1 1043 1307 306 79 15 chr5 60121005 60121459 -92415800 + Lx6 LINE L1 6950 7432 -28 1 1043 218 317 0 0 chr5 60121933 60122015 -92415244 + CT-rich Low_complexity Low_complexity 1 82 0 1 1043 483 33 0 0 chr5 60122029 60122090 -92415169 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1043 232 289 31 82 chr5 60122220 60122318 -92414941 - MT2B LTR ERVL -343 258 166 1 1043 1144 267 31 35 chr5 60123235 60123931 -92413328 + Lx7 LINE L1 5512 6262 -1434 1 1043 301 169 21 53 chr5 60123953 60124047 -92413212 + L1_Mus3 LINE L1 6541 6631 -7 1 1043 22 56 0 0 chr5 60124446 60124482 -92412777 + AT_rich Low_complexity Low_complexity 1 36 0 1 1043 228 231 0 122 chr5 60124895 60124910 -92412349 + MT2B LTR ERVL 152 157 -444 2 1043 401 97 0 10 chr5 60124910 60124980 -92412279 + B1_Mus1 SINE Alu 2 68 -82 2 1043 423 0 0 0 chr5 60125103 60125150 -92412109 + (TTTTTG)n Simple_repeat Simple_repeat 6 52 0 2 1043 1078 61 0 45 chr5 60125150 60125305 -92411954 - B1_Mus1 SINE Alu 0 148 1 2 1043 24 32 0 0 chr5 60125597 60125628 -92411631 + AT_rich Low_complexity Low_complexity 1 31 0 2 1043 411 21 0 0 chr5 60125830 60125878 -92411381 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1043 248 0 0 30 chr5 60126178 60126211 -92411048 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 1043 663 190 0 0 chr5 60126339 60126481 -92410778 + T-rich Low_complexity Low_complexity 1 142 0 2 1043 330 45 0 0 chr5 60126722 60126766 -92410493 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 1043 3324 107 11 0 chr5 60127471 60127949 -92409310 + L1_Mus3 LINE L1 6149 6631 -7 2 1043 1919 59 8 8 chr5 60128011 60128267 -92408992 + L1Md_F2 LINE L1 6313 6568 -14 2 1043 24 0 0 0 chr5 60128352 60128376 -92408883 + AT_rich Low_complexity Low_complexity 1 24 0 2 1043 1239 82 11 0 chr5 60128911 60129142 -92408117 + L1_Mus2 LINE L1 6373 6566 0 2 1043 1167 68 0 0 chr5 60130670 60130817 -92406442 + B1_Mm SINE Alu 1 147 0 2 1043 824 98 0 50 chr5 60131293 60131433 -92405826 + L1_Mus1 LINE L1 6435 6567 0 2 1043 639 26 0 0 chr5 60131586 60131663 -92405596 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 1043 1323 72 0 0 chr5 60131663 60131843 -92405416 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1043 3434 69 40 0 chr5 60131904 60132352 -92404907 + L1_Mus1 LINE L1 6101 6566 -1 2 1043 468 0 0 0 chr5 60132559 60132611 -92404648 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1043 264 68 82 0 chr5 60133204 60133277 -92403982 + (TAGA)n Simple_repeat Simple_repeat 1 79 0 2 1043 188 106 0 60 chr5 60134357 60134407 -92402852 + T-rich Low_complexity Low_complexity 1 47 0 2 1043 2992 135 26 0 chr5 60134428 60134896 -92402363 - Lx3A LINE L1 0 6981 6502 2 1043 4976 193 106 82 chr5 60134917 60135311 -92401948 - RLTR22_Mur LTR ERVK -325 1523 1128 2 1043 878 136 12 12 chr5 60135311 60135475 -92401784 + L1_Mus3 LINE L1 6474 6637 -1 2 1043 4976 193 106 82 chr5 60135475 60136562 -92400697 - RLTR22_Mur LTR ERVK -721 1127 6 2 1043 306 320 147 33 chr5 60136573 60136757 -92400502 + MTE2b LTR MaLR 24 228 -151 2 1043 7310 148 35 38 chr5 60136778 60138382 -92398877 - Lx2 LINE L1 -6 6991 5392 2 1043 1127 83 40 1 chr5 60138367 60138542 -92398717 - Lx2 LINE L1 -591 5853 5664 2 1043 239 297 103 93 chr5 60138625 60138937 -92398322 - RLTR12B LTR ERVK -77 451 137 2 1043 315 52 0 49 chr5 60139009 60139070 -92398189 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 2 1043 294 29 0 0 chr5 60139143 60139178 -92398081 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1043 333 284 15 33 chr5 60139194 60139389 -92397870 - L1M3 LINE L1 -1258 4885 4684 2 1043 1307 67 6 0 chr5 60139394 60139573 -92397686 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 1043 239 114 0 22 chr5 60139573 60139618 -92397641 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 2 1043 370 284 73 35 chr5 60139619 60139878 -92397381 - L1M3 LINE L1 -1431 4709 4441 2 1043 622 327 36 24 chr5 60139878 60140210 -92397049 + L1_Mur3 LINE L1 5483 5818 -62 2 1043 37981 41 0 2 chr5 60141245 60147428 -92389831 - L1Md_T LINE L1 0 6585 319 2 1043 282 297 108 79 chr5 60147952 60148275 -92388984 + MLT1F2 LTR MaLR 154 610 -14 2 1043 617 169 15 8 chr5 60149259 60149390 -92387869 - Lx7 LINE L1 -2 7694 7563 2 1043 279 250 0 0 chr5 60150085 60150145 -92387114 - B3A SINE B2 -127 71 12 2 1043 6139 119 100 4 chr5 60150274 60151295 -92385964 - Lx3_Mus LINE L1 -4 7005 5887 2 1043 875 275 36 71 chr5 60151295 60151604 -92385655 - RMER19B LTR ERVK -300 602 305 2 1043 435 38 0 0 chr5 60151966 60152019 -92385240 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1043 1565 85 0 0 chr5 60152252 60152463 -92384796 - L1_Mus2 LINE L1 0 6566 6356 2 1043 252 59 0 0 chr5 60154012 60154046 -92383213 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2 1043 351 212 0 0 chr5 60154728 60154808 -92382451 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 1043 252 161 81 0 chr5 60154809 60154871 -92382388 + Lx9 LINE L1 7571 7637 -7 2 1043 4123 46 0 4 chr5 60156272 60156773 -92380486 + L1Md_F2 LINE L1 6070 6568 -14 2 1043 426 314 0 11 chr5 60157670 60157847 -92379412 + (CATATA)n Simple_repeat Simple_repeat 2 176 0 2 1043 214 297 0 0 chr5 60158461 60158525 -92378734 - L2a LINE L2 -38 3388 3325 2 1043 1046 82 7 0 chr5 60160290 60160436 -92376823 - L1_Mus2 LINE L1 -2 6564 6418 2 1043 213 39 0 0 chr5 60160445 60160471 -92376788 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2 1043 1155 120 23 0 chr5 60160559 60160734 -92376525 - B2_Mm2 SINE B2 -14 181 3 2 1043 540 30 0 0 chr5 60161008 60161074 -92376185 + (GA)n Simple_repeat Simple_repeat 1 66 0 2 1043 805 265 39 125 chr5 60161265 60161537 -92375722 + Lx7 LINE L1 6985 7258 -438 2 1043 1657 153 7 20 chr5 60161537 60161843 -92375416 + Lx3A LINE L1 6672 6973 -8 2 1043 805 265 39 125 chr5 60161843 60161954 -92375305 + Lx7 LINE L1 7259 7335 -361 2 1044 309 224 0 13 chr5 60162435 60162512 -92374747 + U2 snRNA snRNA 1 76 -112 2 1044 318 252 24 48 chr5 60162513 60162638 -92374621 + Lx7 LINE L1 7382 7503 -193 2 1044 382 190 0 12 chr5 60162650 60162730 -92374529 - Lx6 LINE L1 -1690 5770 5692 2 1044 493 246 87 12 chr5 60162745 60162918 -92374341 - Lx6 LINE L1 -1121 4759 4574 2 1044 678 297 83 32 chr5 60162918 60163255 -92374004 + ORR1D2 LTR MaLR 1 355 -4 2 1044 424 248 9 9 chr5 60163260 60163374 -92373885 - Lx6 LINE L1 -1310 4567 4454 2 1044 268 327 75 0 chr5 60163648 60163760 -92373499 + B1_Mus2 SINE Alu 6 122 -25 2 1044 22 94 0 0 chr5 60163760 60163824 -92373435 + AT_rich Low_complexity Low_complexity 1 64 0 2 1044 634 279 123 34 chr5 60163824 60164463 -92372796 + Lx7 LINE L1 5357 6058 -1638 2 1044 238 265 50 64 chr5 60164516 60164657 -92372602 + RMER17A2 LTR ERVK 244 382 -524 2 1044 522 0 0 0 chr5 60164657 60164715 -92372544 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1044 484 279 133 30 chr5 60164716 60164949 -92372310 + Lx7 LINE L1 6202 6458 -1015 2 1044 331 292 109 30 chr5 60165029 60165230 -92372029 + Lx7 LINE L1 6603 6819 -654 2 1044 333 328 8 57 chr5 60165813 60165936 -92371323 + PB1D10 SINE Alu 1 117 0 2 1044 277 253 33 44 chr5 60166999 60167090 -92370169 + RLTR25B LTR ERVK 418 507 -521 2 1044 639 97 0 0 chr5 60167028 60167121 -92370138 + B1_Mus2 SINE Alu 46 138 -9 2 1044 531 0 0 0 chr5 60167121 60167180 -92370079 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 1044 516 16 0 0 chr5 60167268 60167329 -92369930 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 2 1044 21 36 0 0 chr5 60167586 60167614 -92369645 + AT_rich Low_complexity Low_complexity 1 28 0 2 1044 206 286 0 0 chr5 60167685 60167734 -92369525 + CT-rich Low_complexity Low_complexity 1 49 0 2 1044 1382 316 48 6 chr5 60168013 60168510 -92368749 + Lx7 LINE L1 6603 7120 -576 2 1044 892 280 59 20 chr5 60168555 60168861 -92368398 + Lx9 LINE L1 7091 7408 -236 2 1044 333 125 0 0 chr5 60168863 60168919 -92368340 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1044 273 118 0 0 chr5 60168935 60168986 -92368273 + (T)n Simple_repeat Simple_repeat 1 51 0 2 1044 501 272 80 7 chr5 60169005 60169142 -92368117 + ORR1D1 LTR MaLR 62 208 -166 2 1044 438 233 8 65 chr5 60169814 60169938 -92367321 + ORR1D1 LTR MaLR 204 320 -58 2 1044 1031 103 7 14 chr5 60169967 60170115 -92367144 - B1_Mus2 SINE Alu 0 147 1 2 1044 298 272 48 36 chr5 60170200 60170368 -92366891 + Lx9 LINE L1 7460 7629 -15 2 1044 1612 36 0 0 chr5 60170372 60170564 -92366695 - B2_Mm1a SINE B2 0 193 2 2 1044 189 121 0 0 chr5 60172370 60172403 -92364856 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 2 1044 336 24 0 0 chr5 60173078 60173119 -92364140 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2 1044 321 171 48 42 chr5 60173586 60173751 -92363508 + (TA)n Simple_repeat Simple_repeat 1 166 0 2 1044 297 106 70 3 chr5 60173775 60173836 -92363423 - MT2B LTR ERVL -408 67 1 2 1044 669 388 11 4 chr5 60173836 60174113 -92363146 - MTD LTR MaLR -91 328 50 2 1044 310 377 0 8 chr5 60176974 60177097 -92360162 - RMER15 LTR ERVL -178 397 276 2 1044 1648 349 88 43 chr5 60177238 60178740 -92358519 - RMER15-int LTR ERVL -3 4996 3428 2 1044 597 387 41 37 chr5 60178809 60179461 -92357798 - RMER15-int LTR ERVL -1679 3320 2666 2 1044 3922 136 22 6 chr5 60179476 60180120 -92357139 - Lx3A LINE L1 -2 6979 6326 2 1044 1069 114 23 6 chr5 60180440 60180617 -92356642 + L1Md_F2 LINE L1 6402 6581 -1 2 1044 279 0 0 0 chr5 60180635 60180666 -92356593 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1044 4549 93 11 0 chr5 60180667 60181292 -92355967 + L1Md_F2 LINE L1 5866 6497 -85 2 1044 24 32 0 0 chr5 60181298 60181329 -92355930 + AT_rich Low_complexity Low_complexity 1 31 0 2 1044 335 316 40 6 chr5 60181371 60181546 -92355713 + L1M2 LINE L1 2595 2775 -3368 2 1044 21 36 0 0 chr5 60181694 60181722 -92355537 + AT_rich Low_complexity Low_complexity 1 28 0 2 1044 478 341 18 33 chr5 60181821 60182033 -92355226 + ORR1E LTR MaLR 3 201 -169 2 1044 681 95 0 0 chr5 60182033 60182149 -92355110 + (TCTCTG)n Simple_repeat Simple_repeat 3 118 0 2 1044 263 284 97 35 chr5 60182164 60182277 -92354982 - MIRb SINE MIR -56 212 93 2 1044 271 42 62 0 chr5 60182542 60182590 -92354669 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1044 799 292 51 51 chr5 60182941 60183371 -92353888 + L1M2 LINE L1 4577 5006 -1137 2 1044 753 322 26 26 chr5 60183669 60183978 -92353281 + MTE2b LTR MaLR 13 321 -58 2 1044 659 296 18 13 chr5 60183996 60184225 -92353034 + Lx8 LINE L1 6682 6911 -562 2 1044 7831 154 21 123 chr5 60184394 60186141 -92351118 + RLTR21 LTR ERVK 1 1568 -4 2 1044 405 180 0 0 chr5 60186633 60186761 -92350498 + (TA)n Simple_repeat Simple_repeat 2 129 0 2 1044 252 218 18 0 chr5 60187687 60187742 -92349517 - MLT1A1 LTR MaLR -62 346 291 2 1044 324 0 0 0 chr5 60187926 60187962 -92349297 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1044 276 53 0 0 chr5 60187999 60188037 -92349222 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1044 21 57 0 0 chr5 60188192 60188227 -92349032 + AT_rich Low_complexity Low_complexity 1 35 0 2 1044 22 0 0 0 chr5 60188259 60188281 -92348978 + AT_rich Low_complexity Low_complexity 1 22 0 3 1044 3340 177 8 33 chr5 60188308 60188975 -92348284 + Lx2A1 LINE L1 6354 7003 -5 3 1044 927 284 54 26 chr5 60189067 60189418 -92347841 - Lx6 LINE L1 -26 7434 7074 3 1044 3302 89 30 0 chr5 60189499 60189784 -92347475 + MT2C_Mm LTR ERVL 1 298 -177 3 1044 366 23 0 0 chr5 60189784 60189827 -92347432 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1044 3302 89 30 0 chr5 60189827 60190002 -92347257 + MT2C_Mm LTR ERVL 299 474 -1 3 1044 297 0 0 0 chr5 60190252 60190285 -92346974 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1044 497 16 16 0 chr5 60190511 60190573 -92346686 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 1044 5293 38 5 0 chr5 60190746 60191385 -92345874 + L1Md_F3 LINE L1 5931 6572 -12 3 1044 332 342 42 42 chr5 60191736 60191928 -92345331 + L1M2 LINE L1 4819 5010 -1133 3 1044 351 273 136 17 chr5 60191936 60192171 -92345088 + Lx9 LINE L1 7381 7643 -1 3 1044 237 250 11 45 chr5 60192302 60192390 -92344869 + L1M2 LINE L1 5221 5305 -835 3 1044 504 32 0 0 chr5 60192560 60192622 -92344637 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1044 21 57 0 0 chr5 60192700 60192735 -92344524 + AT_rich Low_complexity Low_complexity 1 35 0 3 1044 831 48 0 0 chr5 60193172 60193276 -92343983 + (GA)n Simple_repeat Simple_repeat 2 105 0 3 1044 1322 216 41 142 chr5 60193447 60193532 -92343727 + Lx6 LINE L1 5677 5742 -1718 3 1044 4258 151 1 1 chr5 60193532 60194230 -92343029 + L1_Mus4 LINE L1 5939 6636 0 3 1044 1322 216 41 142 chr5 60194230 60194709 -92342550 + Lx6 LINE L1 5743 6184 -1276 3 1044 795 134 0 0 chr5 60194771 60194988 -92342271 + (TAGA)n Simple_repeat Simple_repeat 1 217 0 3 1044 396 0 0 0 chr5 60194990 60195034 -92342225 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1044 453 356 49 25 chr5 60195131 60195416 -92341843 + B4A SINE B4 1 292 0 3 1044 225 0 0 0 chr5 60195736 60195761 -92341498 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1044 591 15 0 0 chr5 60195762 60195830 -92341429 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 1044 276 327 9 19 chr5 60195860 60195966 -92341293 - Lx7 LINE L1 -835 6861 6757 3 1044 392 343 12 6 chr5 60195972 60196139 -92341120 + Lx7 LINE L1 7160 7327 -369 3 1044 1211 136 5 0 chr5 60196144 60196328 -92340931 + MT2C_Mm LTR ERVL 291 475 0 3 1044 291 113 0 0 chr5 60196491 60196544 -92340715 + (CAA)n Simple_repeat Simple_repeat 2 54 0 3 1044 392 356 71 75 chr5 60196907 60197147 -92340112 + B4 SINE B4 24 262 -30 3 1044 299 164 0 16 chr5 60197174 60197236 -92340023 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1044 20371 179 15 21 chr5 60197957 60198836 -92338423 + L1_Mus4 LINE L1 529 1387 -4496 3 1044 1041 60 8 0 chr5 60198836 60198969 -92338290 + B1_Mus2 SINE Alu 2 135 -12 3 1044 20371 177 24 23 chr5 60198969 60200758 -92336501 + L1_Mus4 LINE L1 1388 3194 -2689 3 1044 252 59 0 0 chr5 60200758 60200792 -92336467 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1044 20371 177 24 23 chr5 60200792 60202997 -92334262 + L1_Mus4 LINE L1 3195 5402 -481 3 1044 1062 82 0 0 chr5 60202997 60203132 -92334127 + B1_Mm SINE Alu 1 135 -12 3 1044 209 30 61 0 chr5 60203133 60203166 -92334093 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1044 20371 117 4 6 chr5 60203166 60203619 -92333640 + L1_Mus4 LINE L1 5403 5519 -364 3 1044 952 190 56 8 chr5 60203623 60203857 -92333402 + L1_Mur2 LINE L1 4923 5167 -710 3 1044 1781 143 7 3 chr5 60203857 60204159 -92333100 + L1_Mus4 LINE L1 6332 6634 -2 3 1044 233 325 4 53 chr5 60204543 60204668 -92332591 - B1_Mur4 SINE Alu -8 112 1 3 1044 374 250 11 11 chr5 60205070 60205163 -92332096 + Lx9 LINE L1 6487 6579 -1065 3 1044 698 309 144 23 chr5 60205198 60205606 -92331653 + Lx9 LINE L1 7080 7532 -112 3 1044 570 15 0 0 chr5 60205606 60205673 -92331586 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 3 1044 698 309 144 23 chr5 60205673 60205750 -92331509 + Lx9 LINE L1 7533 7623 -21 3 1044 233 75 25 0 chr5 60205942 60205982 -92331277 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 3 1044 186 43 0 0 chr5 60206041 60206064 -92331195 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 1044 1112 82 7 0 chr5 60206311 60206457 -92330802 + B1_Mm SINE Alu 1 147 0 3 1044 809 259 48 5 chr5 60206799 60207005 -92330254 - Lx7 LINE L1 -637 6823 6609 3 1044 1901 203 156 2 chr5 60207005 60207468 -92329791 + RMER6C LTR ERVK 1 534 -156 3 1044 5774 175 49 62 chr5 60207468 60208781 -92328478 + Lx2 LINE L1 5701 6996 -1 3 1044 743 203 7 0 chr5 60208803 60208951 -92328308 + RMER6C LTR ERVK 520 668 -22 3 1044 2596 272 80 24 chr5 60208952 60210084 -92327175 - Lx7 LINE L1 -1076 6620 5419 3 1044 901 145 13 0 chr5 60210126 60210278 -92326981 + Lx6 LINE L1 7307 7460 0 3 1044 23 0 0 0 chr5 60210608 60210631 -92326628 + AT_rich Low_complexity Low_complexity 1 23 0 3 1044 21 82 0 0 chr5 60211642 60211691 -92325568 + AT_rich Low_complexity Low_complexity 1 49 0 3 1044 207 105 26 0 chr5 60211730 60211768 -92325491 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 1044 585 253 17 73 chr5 60212570 60212804 -92324455 - Lx7 LINE L1 -27 7669 7449 3 1044 233 232 0 0 chr5 60212828 60212884 -92324375 + A-rich Low_complexity Low_complexity 1 56 0 3 1044 790 224 88 22 chr5 60212975 60213082 -92324177 - Lx7 LINE L1 -707 6989 6866 3 1044 5693 42 3 7 chr5 60213082 60213823 -92323436 - L1Md_F2 LINE L1 0 6582 5857 3 1044 790 224 88 22 chr5 60213823 60213941 -92323318 - Lx7 LINE L1 -831 6865 6747 3 1044 192 158 0 0 chr5 60213951 60213989 -92323270 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1044 5460 68 10 30 chr5 60214418 60215188 -92322071 - L1Md_F2 LINE L1 -7 6575 5821 3 1044 375 23 0 0 chr5 60215268 60215312 -92321947 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1044 218 277 50 50 chr5 60216117 60216216 -92321043 - L2 LINE L2 -1331 2088 1990 3 1044 298 304 21 11 chr5 60216461 60216554 -92320705 + ID_B1 SINE B4 125 218 -6 3 1044 426 108 0 0 chr5 60216972 60217037 -92320222 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1044 22 0 0 0 chr5 60217051 60217073 -92320186 + AT_rich Low_complexity Low_complexity 1 22 0 3 1044 517 324 34 2 chr5 60218183 60218356 -92318903 + B3A SINE B2 2 178 -38 3 1044 192 125 0 0 chr5 60218389 60218421 -92318838 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 3 1044 4258 134 60 46 chr5 60218440 60219186 -92318073 + RLTR13D6 LTR ERVK 1 762 -140 3 1044 192 125 0 0 chr5 60219186 60219218 -92318041 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 3 1044 4258 134 60 46 chr5 60219218 60219274 -92317985 + RLTR13D6 LTR ERVK 763 814 -88 3 1044 2830 124 9 2 chr5 60219274 60219734 -92317525 - L1Md_F LINE L1 -2162 3721 3259 3 1044 3199 178 25 113 chr5 60219782 60221318 -92315941 - L1Md_F LINE L1 -2143 1771 395 3 1044 335 194 0 0 chr5 60221320 60221387 -92315872 - L1_Mur3 LINE L1 -616 5264 5198 3 1044 912 301 44 19 chr5 60221440 60221758 -92315501 + Lx6 LINE L1 6378 6703 -757 3 1044 618 286 48 35 chr5 60222407 60222697 -92314562 + RLTR15 LTR ERVK 1 294 -65 3 1044 1175 41 0 7 chr5 60222718 60222866 -92314393 + B1_Mus2 SINE Alu 1 147 0 3 1044 225 0 0 0 chr5 60222866 60222891 -92314368 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1044 1508 224 40 20 chr5 60223651 60223998 -92313261 - ORR1B1 LTR MaLR 0 394 41 3 1044 3962 252 96 74 chr5 60224264 60226964 -92310295 + MYSERV6-int LTR ERVK 3772 8903 -56 3 1044 289 285 110 61 chr5 60226971 60227199 -92310060 + RLTR15 LTR ERVK 102 340 -19 3 1044 2351 279 37 147 chr5 60227220 60228696 -92308563 + RMER1C Other Other 29 1342 0 3 1044 28 48 0 0 chr5 60228828 60228870 -92308389 + AT_rich Low_complexity Low_complexity 1 42 0 3 1044 4148 42 6 0 chr5 60229256 60229927 -92307332 - L1Md_F2 LINE L1 -497 6085 5412 3 1044 3787 59 4 0 chr5 60229927 60230415 -92306844 + L1Md_F2 LINE L1 6092 6581 -1 3 1044 1371 349 48 8 chr5 60231314 60231946 -92305313 + Lx8 LINE L1 6202 6858 -615 3 1044 429 133 0 0 chr5 60231946 60232021 -92305238 + (TC)n Simple_repeat Simple_repeat 2 76 0 3 1044 387 182 0 0 chr5 60232020 60232097 -92305162 + (TA)n Simple_repeat Simple_repeat 2 78 0 3 1044 32 75 0 0 chr5 60232157 60232224 -92305035 + AT_rich Low_complexity Low_complexity 1 67 0 3 1044 23 0 0 0 chr5 60232296 60232319 -92304940 + AT_rich Low_complexity Low_complexity 1 23 0 3 1044 1205 118 27 5 chr5 60232539 60232727 -92304532 - B2_Mm2 SINE B2 -3 192 1 3 1044 1417 113 14 0 chr5 60233521 60233742 -92303517 + L1_Mus2 LINE L1 6342 6565 -1 3 1044 22 0 0 0 chr5 60234572 60234594 -92302665 + AT_rich Low_complexity Low_complexity 1 22 0 3 1044 271 367 16 40 chr5 60234669 60234794 -92302465 + RSINE1 SINE B4 6 127 -38 3 1044 2732 82 3 0 chr5 60236131 60236495 -92300764 - L1_Mus1 LINE L1 -3 6564 6200 3 1044 4487 95 7 0 chr5 60236502 60237120 -92300139 + L1_Mus1 LINE L1 5587 6566 -410 3 1044 290 336 32 57 chr5 60238355 60238513 -92298746 - MLT1A LTR MaLR -218 156 3 3 1044 260 323 112 61 chr5 60238541 60238755 -92298504 - MLT1E1A LTR MaLR -116 564 340 3 1044 864 313 78 23 chr5 60238880 60239227 -92298032 + ORR1D2 LTR MaLR 1 366 -4 3 1044 264 130 0 0 chr5 60239368 60239414 -92297845 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 3 1044 543 215 11 6 chr5 60239414 60239592 -92297667 + CT-rich Low_complexity Low_complexity 1 179 0 3 1044 291 140 0 0 chr5 60239612 60239662 -92297597 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1044 2848 9 0 0 chr5 60239818 60240140 -92297119 - RLTRETN_Mm LTR ERVK 0 322 1 3 1044 4426 29 0 13 chr5 60240140 60240670 -92296589 - MMETn-int LTR ERVK 0 4844 4322 3 1044 837 71 0 0 chr5 60240955 60241081 -92296178 + (TC)n Simple_repeat Simple_repeat 1 126 0 3 1044 1369 189 97 26 chr5 60241121 60241502 -92295757 + RMER17C LTR ERVK 3 410 0 3 1044 526 312 0 7 chr5 60241818 60241960 -92295299 + B1_Mur2 SINE Alu 2 142 -7 3 1044 180 77 0 0 chr5 60241964 60241990 -92295269 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 3 1044 272 307 42 34 chr5 60242898 60243016 -92294243 - MTEb LTR MaLR -5 374 256 3 1044 378 0 0 0 chr5 60243490 60243532 -92293727 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1044 1460 191 39 36 chr5 60243538 60243878 -92293381 - RMER17C LTR ERVK -9 401 60 3 1044 5005 117 34 29 chr5 60243878 60244682 -92292577 - RLTR13C2 LTR ERVK 0 808 1 3 1044 1460 206 41 36 chr5 60244682 60244775 -92292484 - RMER17C LTR ERVK -351 59 16 3 1044 1630 184 9 69 chr5 60244837 60245187 -92292072 + ORR1A4 LTR MaLR 1 329 0 3 1044 1731 63 0 0 chr5 60245359 60245582 -92291677 + L1Md_T LINE L1 6360 6582 0 3 1044 276 366 0 0 chr5 60246592 60246704 -92290555 - PB1D9 SINE Alu -7 113 2 3 1044 837 267 59 0 chr5 60246838 60247025 -92290234 - Lx9 LINE L1 -1027 6617 6420 4 1044 236 192 0 0 chr5 60247083 60247135 -92290124 + A-rich Low_complexity Low_complexity 1 52 0 4 1044 371 38 19 0 chr5 60248478 60248531 -92288728 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 4 1044 242 246 49 0 chr5 60249070 60249131 -92288128 - RMER10B LTR ERVL -63 335 272 4 1044 187 333 12 12 chr5 60249683 60249768 -92287491 - L2 LINE L2 -556 2863 2779 4 1044 216 0 0 0 chr5 60249793 60249817 -92287442 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1044 189 121 0 0 chr5 60250088 60250121 -92287138 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1044 210 158 0 0 chr5 60250842 60250880 -92286379 + A-rich Low_complexity Low_complexity 1 38 0 4 1044 23 68 0 0 chr5 60251832 60251876 -92285383 + AT_rich Low_complexity Low_complexity 1 44 0 4 1044 4688 68 2 0 chr5 60252459 60253045 -92284214 + LTRIS_Mus LTR ERV1 1 587 0 4 1044 442 223 0 87 chr5 60253223 60253326 -92283933 - RLTR20B3 LTR ERVK 0 563 470 4 1044 396 0 0 0 chr5 60253326 60253370 -92283889 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1044 1394 225 39 30 chr5 60253374 60253736 -92283523 - RLTR20B3 LTR ERVK -212 365 1 4 1044 26 0 0 0 chr5 60255203 60255229 -92282030 + AT_rich Low_complexity Low_complexity 1 26 0 4 1044 207 0 0 0 chr5 60255974 60255997 -92281262 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1044 1977 133 9 9 chr5 60256361 60256688 -92280571 - IAPEY3_LTR LTR ERVK -5 327 1 4 1044 8911 117 4 17 chr5 60256688 60258048 -92279211 - IAPEy-int LTR ERVK 0 7513 6171 4 1044 2009 133 41 0 chr5 60258029 60258345 -92278914 - IAPEY3-int LTR ERVK -6469 1211 883 4 1044 550 218 83 0 chr5 60258495 60258628 -92278631 + B1_Mus2 SINE Alu 1 144 -3 4 1044 2294 131 43 5 chr5 60258898 60259290 -92277969 - Lx LINE L1 -4 6650 6244 4 1044 1139 129 6 6 chr5 60259329 60259508 -92277751 + B2_Mm2 SINE B2 1 179 -16 4 1044 943 296 57 7 chr5 60261006 60261304 -92275955 + Lx6 LINE L1 6924 7513 -183 4 1044 432 0 0 0 chr5 60261304 60261352 -92275907 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1044 339 297 142 42 chr5 60261352 60261498 -92275761 + Lx6 LINE L1 7514 7667 -29 4 1044 195 69 0 0 chr5 60261733 60261762 -92275497 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 4 1044 356 321 46 37 chr5 60261789 60262006 -92275253 + Lx7 LINE L1 7081 7299 -397 4 1044 21 0 0 0 chr5 60262017 60262038 -92275221 + AT_rich Low_complexity Low_complexity 1 21 0 4 1044 288 77 0 0 chr5 60262171 60262210 -92275049 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 1044 270 188 12 36 chr5 60262269 60262352 -92274907 + (CAAA)n Simple_repeat Simple_repeat 2 82 0 4 1044 36 0 0 0 chr5 60263366 60263402 -92273857 + AT_rich Low_complexity Low_complexity 1 36 0 4 1044 234 207 0 0 chr5 60263484 60263542 -92273717 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1044 258 324 48 0 chr5 60263587 60263692 -92273567 - Lx9 LINE L1 -457 7187 7078 4 1044 520 358 44 15 chr5 60263689 60264032 -92273227 - Lx9 LINE L1 -860 6784 6432 4 1044 5293 176 13 28 chr5 60264034 60265046 -92272213 + Lx2 LINE L1 6001 6997 0 4 1044 234 159 28 42 chr5 60266320 60266392 -92270867 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1044 936 77 0 0 chr5 60266393 60266523 -92270736 + (GA)n Simple_repeat Simple_repeat 1 130 0 4 1044 276 149 0 0 chr5 60267156 60267203 -92270056 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 4 1044 354 23 0 0 chr5 60267310 60267353 -92269906 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1044 1430 260 121 17 chr5 60267355 60268047 -92269212 - Lx9 LINE L1 -205 7439 6641 4 1044 1087 90 0 7 chr5 60268228 60268374 -92268885 + B1_Mus1 SINE Alu 2 146 -2 4 1044 24 67 0 0 chr5 60268398 60268443 -92268816 + AT_rich Low_complexity Low_complexity 1 45 0 4 1044 21 0 0 0 chr5 60268518 60268539 -92268720 + AT_rich Low_complexity Low_complexity 1 21 0 4 1044 298 328 34 25 chr5 60268943 60269062 -92268197 - PB1D9 SINE Alu 0 120 1 4 1044 1059 93 0 0 chr5 60270128 60270267 -92266992 + B1_Mus1 SINE Alu 1 139 -9 4 1044 252 0 0 0 chr5 60270267 60270295 -92266964 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1044 428 139 0 25 chr5 60270296 60270377 -92266882 + L1Md_F2 LINE L1 6492 6570 -12 4 1044 6825 60 6 0 chr5 60270388 60271287 -92265972 + L1Md_F2 LINE L1 5693 6582 0 4 1044 3817 116 24 12 chr5 60271486 60272081 -92265178 - Lx3_Mus LINE L1 0 7009 6408 4 1044 586 149 92 34 chr5 60272081 60272300 -92264959 + Lx3_Mus LINE L1 5831 6078 -898 4 1044 1025 145 6 0 chr5 60272301 60272480 -92264779 + GA-rich Low_complexity Low_complexity 1 180 0 4 1044 2845 121 46 0 chr5 60272483 60272937 -92264322 + Lx3_Mus LINE L1 5921 6395 -614 4 1044 1204 97 7 0 chr5 60272958 60273136 -92264123 - L1Md_F3 LINE L1 -366 6270 6085 4 1044 259 341 65 65 chr5 60273281 60273419 -92263840 + B3 SINE B2 66 203 -13 4 1044 5862 252 41 22 chr5 60273512 60276300 -92260959 + Lx6 LINE L1 4575 7424 -36 4 1044 222 37 0 0 chr5 60276349 60276376 -92260883 + (TA)n Simple_repeat Simple_repeat 2 28 0 4 1044 29 28 0 0 chr5 60276473 60276509 -92260750 + AT_rich Low_complexity Low_complexity 1 36 0 4 1044 21 36 0 0 chr5 60276752 60276780 -92260479 + AT_rich Low_complexity Low_complexity 1 28 0 4 1044 213 213 66 0 chr5 60276834 60276895 -92260364 + GA-rich Low_complexity Low_complexity 2 66 0 4 1044 25 31 0 0 chr5 60276928 60276960 -92260299 + AT_rich Low_complexity Low_complexity 1 32 0 4 1044 217 205 0 0 chr5 60277047 60277086 -92260173 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1044 468 0 0 0 chr5 60277181 60277233 -92260026 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1044 973 353 98 57 chr5 60277296 60278090 -92259169 - Lx8 LINE L1 -469 7004 6174 4 1044 360 0 0 0 chr5 60278090 60278130 -92259129 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1044 867 334 86 33 chr5 60278130 60278766 -92258493 - Lx8 LINE L1 -1523 6173 5507 4 1044 26 50 0 0 chr5 60278777 60278817 -92258442 + AT_rich Low_complexity Low_complexity 1 40 0 4 1044 242 56 28 0 chr5 60278863 60278899 -92258360 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1044 6796 182 30 32 chr5 60279784 60282272 -92254987 - Lx2 LINE L1 -13 6984 4511 4 1044 341 323 48 0 chr5 60282363 60282487 -92254772 + B1F SINE Alu 11 140 -9 4 1044 621 0 0 0 chr5 60283490 60283559 -92253700 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1044 254 274 0 0 chr5 60283598 60283660 -92253599 + GA-rich Low_complexity Low_complexity 4 65 0 4 1044 563 294 21 31 chr5 60283910 60284103 -92253156 + Lx8 LINE L1 6299 6489 -984 4 1044 348 24 0 0 chr5 60284111 60284152 -92253107 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1044 428 349 67 64 chr5 60284154 60284451 -92252808 + MLT1A LTR MaLR 23 320 -54 4 1044 625 290 59 0 chr5 60284840 60285026 -92252233 + B3 SINE B2 10 206 -10 4 1044 3427 23 5 0 chr5 60286108 60286502 -92250757 - MTA_Mm LTR MaLR 0 396 1 4 1044 4502 57 0 3 chr5 60286527 60287093 -92250166 - L1Md_F2 LINE L1 -13 6569 6006 4 1044 379 374 44 44 chr5 60287165 60287526 -92249733 + Lx7 LINE L1 6925 7285 -411 4 1044 450 136 0 0 chr5 60287560 60287641 -92249618 + (GA)n Simple_repeat Simple_repeat 2 82 0 4 1044 22 56 0 0 chr5 60287806 60287842 -92249417 + AT_rich Low_complexity Low_complexity 1 36 0 4 1044 376 357 13 0 chr5 60288001 60288158 -92249101 + Lx9 LINE L1 7313 7471 -173 4 1044 2440 119 33 42 chr5 60289253 60289683 -92247576 - Lx LINE L1 -1 6653 6228 4 1044 22 35 0 0 chr5 60289916 60289945 -92247314 + AT_rich Low_complexity Low_complexity 1 29 0 4 1044 450 0 0 0 chr5 60290048 60290098 -92247161 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 4 1044 477 323 30 18 chr5 60290098 60290265 -92246994 + MER5A DNA MER1_type 19 187 -2 4 1044 5227 100 29 8 chr5 60290376 60291167 -92246092 + RLTR13C2 LTR ERVK 2 983 0 4 1044 194 0 39 0 chr5 60291282 60291308 -92245951 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 4 1044 756 254 14 99 chr5 60291466 60291811 -92245448 + Lx7 LINE L1 7110 7632 -64 4 1044 249 206 111 56 chr5 60291809 60291917 -92245342 + Lx7 LINE L1 7298 7411 -285 4 1044 251 250 99 41 chr5 60291958 60292129 -92245130 + Lx7 LINE L1 7516 7696 0 4 1044 821 297 103 16 chr5 60292187 60292498 -92244761 - MTEb LTR MaLR 0 379 42 4 1044 331 280 0 0 chr5 60292707 60292782 -92244477 + B3 SINE B2 131 205 -11 4 130 1669 84 55 27 chr5 60293033 60293290 -92243969 + L1Md_F2 LINE L1 6319 6582 0 4 1045 1121 327 11 5 chr5 60293321 60293690 -92243569 - Lx8 LINE L1 -862 6611 6241 4 1045 27 0 0 0 chr5 60293699 60293726 -92243533 + AT_rich Low_complexity Low_complexity 1 27 0 4 1045 495 0 0 0 chr5 60294323 60294378 -92242881 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1045 23 0 0 0 chr5 60294630 60294653 -92242606 + AT_rich Low_complexity Low_complexity 1 23 0 4 1045 3120 143 26 34 chr5 60295010 60295572 -92241687 - Lx2 LINE L1 -1032 5965 5363 4 1045 3016 121 14 18 chr5 60295581 60296079 -92241180 - Lx LINE L1 -6 6648 6153 4 1045 315 203 31 0 chr5 60296079 60296133 -92241126 - B2_Mm2 SINE B2 -140 55 2 4 1045 3120 188 50 83 chr5 60296133 60296372 -92240887 - Lx2 LINE L1 -515 5362 5124 4 1045 4854 200 43 9 chr5 60296376 60297422 -92239837 + Lx2B LINE L1 5916 6997 -3 4 1045 206 143 61 0 chr5 60297858 60297907 -92239352 + A-rich Low_complexity Low_complexity 1 52 0 4 1045 4361 211 45 6 chr5 60298017 60299071 -92238188 - Lx4B LINE L1 -405 6653 5540 4 1045 673 193 0 36 chr5 60299063 60299203 -92238056 + L1_Mur2 LINE L1 5007 5141 -736 4 1045 1774 225 42 8 chr5 60299195 60299581 -92237678 - Lx5 LINE L1 -212 6838 6440 4 1045 1418 225 7 3 chr5 60299590 60299875 -92237384 + Lx5 LINE L1 6144 6429 -621 4 1045 1618 140 20 13 chr5 60300047 60300351 -92236908 - Lx3_Mus LINE L1 -796 6213 5908 4 1045 621 173 0 0 chr5 60300352 60300479 -92236780 + T-rich Low_complexity Low_complexity 1 127 0 4 1045 801 93 70 0 chr5 60300479 60300608 -92236651 - Lx3_Mus LINE L1 -1089 5920 5783 4 1045 770 48 0 0 chr5 60300610 60300715 -92236544 - L1Md_T LINE L1 -12 6570 6466 4 1045 1824 116 26 4 chr5 60300715 60300984 -92236275 - Lx3_Mus LINE L1 -90 5796 5522 4 1045 4909 111 12 15 chr5 60300984 60301724 -92235535 + Lx3_Mus LINE L1 6269 7006 -3 5 1045 2603 60 57 54 chr5 60301726 60302114 -92235145 + L1_Mus2 LINE L1 6178 6566 0 5 1045 29 0 0 0 chr5 60302532 60302561 -92234698 + AT_rich Low_complexity Low_complexity 1 29 0 5 1045 443 18 18 0 chr5 60302571 60302627 -92234632 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1045 198 291 37 37 chr5 60303710 60303792 -92233467 - MIR SINE MIR -95 167 86 5 1045 21 0 0 0 chr5 60304110 60304131 -92233128 + AT_rich Low_complexity Low_complexity 1 21 0 5 1045 28 0 0 0 chr5 60304758 60304786 -92232473 + AT_rich Low_complexity Low_complexity 1 28 0 5 1045 31 26 0 0 chr5 60305032 60305070 -92232189 + AT_rich Low_complexity Low_complexity 1 38 0 5 1045 583 125 9 9 chr5 60306317 60306422 -92230837 + (TA)n Simple_repeat Simple_repeat 1 105 0 5 1045 27 29 0 0 chr5 60306813 60306847 -92230412 + AT_rich Low_complexity Low_complexity 1 34 0 5 1045 631 64 20 69 chr5 60306900 60307001 -92230258 - B1_Mm SINE Alu 0 147 52 5 1045 860 52 0 0 chr5 60307090 60307205 -92230054 + L1_Mus2 LINE L1 6452 6566 0 5 1045 414 241 2 2 chr5 60307244 60307351 -92229908 - MTC LTR MaLR -289 107 1 5 1045 22 0 0 0 chr5 60308525 60308547 -92228712 + AT_rich Low_complexity Low_complexity 1 22 0 5 1045 393 136 0 0 chr5 60310052 60310118 -92227141 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 5 1045 4485 274 41 11 chr5 60310118 60310151 -92227108 - Lx7 LINE L1 -329 7367 7334 5 1045 486 0 0 0 chr5 60310151 60310205 -92227054 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1045 4485 274 41 11 chr5 60310205 60311450 -92225809 - Lx7 LINE L1 -363 7333 6050 5 1045 419 367 82 70 chr5 60311460 60311914 -92225345 + L1MC4a LINE L1 5437 5895 -1987 5 1045 436 308 99 60 chr5 60312036 60312419 -92224840 - L1MC4 LINE L1 -655 7387 6990 5 1045 732 257 107 60 chr5 60313234 60313366 -92223893 - RMER12B LTR ERVK -113 1459 1287 5 1045 519 154 29 22 chr5 60313366 60313505 -92223754 + Lx LINE L1 6515 6654 0 5 1045 732 241 162 90 chr5 60313505 60313588 -92223671 - RMER12B LTR ERVK -202 1370 1306 5 1045 264 59 0 0 chr5 60313588 60313622 -92223637 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1045 6070 189 27 47 chr5 60313622 60314995 -92222264 - RMER12B LTR ERVK -267 1305 1 5 1045 306 0 0 0 chr5 60315039 60315073 -92222186 + (CATA)n Simple_repeat Simple_repeat 2 35 0 5 1045 210 105 0 0 chr5 60315105 60315143 -92222116 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1045 1157 29 0 0 chr5 60315156 60315295 -92221964 - B1_Mus2 SINE Alu -8 139 1 5 1045 744 243 88 60 chr5 60315469 60315788 -92221471 + RLTR15 LTR ERVK 6 333 -26 5 1045 2456 202 209 109 chr5 60316225 60316290 -92220969 - RLTR25B LTR ERVK 0 1028 965 5 1045 220 27 0 51 chr5 60316290 60316329 -92220930 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1045 2456 202 209 109 chr5 60316329 60317198 -92220061 - RLTR25B LTR ERVK -64 964 3 5 1045 239 208 38 0 chr5 60317200 60317253 -92220006 + Lx9 LINE L1 7378 7432 -212 5 1045 3959 129 19 2 chr5 60317301 60317885 -92219374 - MT2B LTR ERVL 0 601 8 5 1045 226 143 0 0 chr5 60318038 60318073 -92219186 - MLT1A LTR MaLR -265 109 75 5 1045 24 32 0 0 chr5 60318235 60318266 -92218993 + AT_rich Low_complexity Low_complexity 1 31 0 5 1045 855 263 80 42 chr5 60318439 60318840 -92218419 + L1MC4 LINE L1 7206 7621 -421 5 1045 782 30 20 0 chr5 60318840 60318940 -92218319 + (GAAA)n Simple_repeat Simple_repeat 1 102 0 5 1045 495 0 0 0 chr5 60319224 60319279 -92217980 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1045 297 0 0 0 chr5 60319293 60319326 -92217933 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1045 617 346 79 20 chr5 60319546 60320269 -92216990 + Lx8 LINE L1 6534 7318 -155 5 1045 24 0 0 0 chr5 60320277 60320301 -92216958 + AT_rich Low_complexity Low_complexity 1 24 0 5 1045 22 0 0 0 chr5 60320397 60320419 -92216840 + AT_rich Low_complexity Low_complexity 1 22 0 5 1045 225 298 11 11 chr5 60320892 60320987 -92216272 + L1_Mur2 LINE L1 4767 4861 -1016 5 1045 1394 34 11 0 chr5 60320996 60321171 -92216088 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 5 1045 862 120 38 0 chr5 60321197 60321330 -92215929 - B1_Mus1 SINE Alu -9 139 2 5 1045 324 0 0 0 chr5 60321331 60321367 -92215892 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 5 1045 2809 126 43 6 chr5 60321394 60321864 -92215395 + RMER17B LTR ERVK 1 487 -471 5 1045 516 63 0 48 chr5 60321869 60321952 -92215307 + B1_Mur4 SINE Alu 72 150 0 5 1045 1971 251 25 15 chr5 60321969 60322439 -92214820 + RMER17B LTR ERVK 479 953 -5 5 1045 861 229 112 48 chr5 60322539 60322851 -92214408 + RMER6A LTR ERVK 2 333 -357 5 1045 346 273 116 0 chr5 60322863 60322984 -92214275 + Lx5 LINE L1 6912 7046 -4 5 1045 585 0 0 0 chr5 60323018 60323083 -92214176 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1045 1197 219 63 30 chr5 60323108 60323487 -92213772 + RMER6A LTR ERVK 377 719 -1 5 1045 408 40 0 0 chr5 60324066 60324116 -92213143 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1045 187 203 29 0 chr5 60324122 60324191 -92213068 + (CATATA)n Simple_repeat Simple_repeat 5 75 0 5 1045 23 33 0 0 chr5 60324304 60324334 -92212925 + AT_rich Low_complexity Low_complexity 1 30 0 5 1045 1369 209 0 7 chr5 60325308 60325625 -92211634 - L1_Mus4 LINE L1 0 6636 6342 5 1045 426 69 0 0 chr5 60325676 60325734 -92211525 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1045 23549 167 21 7 chr5 60325786 60331742 -92205517 - L1_Mus4 LINE L1 -25 6611 571 5 1045 2682 56 0 6 chr5 60333588 60333927 -92203332 - L1Md_F2 LINE L1 -13 6569 6233 5 1045 1715 66 0 0 chr5 60333927 60334140 -92203119 + L1Md_F2 LINE L1 6016 6228 -354 5 1045 26 50 0 0 chr5 60334215 60334255 -92203004 + AT_rich Low_complexity Low_complexity 1 40 0 5 1045 378 0 0 0 chr5 60334921 60334963 -92202296 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1045 272 241 32 4 chr5 60335326 60335460 -92201799 + L1_Mur2 LINE L1 3837 3976 -1904 5 1045 2172 78 28 52 chr5 60335665 60335991 -92201268 - L1_Mus3 LINE L1 -282 6356 6039 5 1045 1776 111 38 7 chr5 60335991 60336281 -92200978 + L1_Mus3 LINE L1 6338 6636 -2 5 1045 25 75 0 0 chr5 60336305 60336358 -92200901 + AT_rich Low_complexity Low_complexity 1 53 0 5 1045 23 54 0 0 chr5 60336573 60336610 -92200649 + AT_rich Low_complexity Low_complexity 1 37 0 5 1045 25 0 0 0 chr5 60337577 60337602 -92199657 + AT_rich Low_complexity Low_complexity 1 25 0 5 1045 225 265 10 10 chr5 60337652 60337751 -92199508 + (TA)n Simple_repeat Simple_repeat 1 99 0 5 1045 27 62 0 0 chr5 60337841 60337889 -92199370 + AT_rich Low_complexity Low_complexity 1 48 0 5 1045 333 0 0 0 chr5 60338624 60338661 -92198598 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1045 4175 120 26 3 chr5 60338880 60339530 -92197729 + Lx3A LINE L1 6317 6981 0 5 1045 345 100 0 0 chr5 60339530 60339580 -92197679 + (A)n Simple_repeat Simple_repeat 1 50 0 5 1045 685 253 20 56 chr5 60339580 60339777 -92197482 + B3 SINE B2 27 216 0 5 1045 381 346 23 23 chr5 60339822 60339955 -92197304 - RSINE1 SINE B4 -20 145 13 5 1045 2029 80 28 16 chr5 60340189 60340507 -92196752 - RLTRETN_Mm LTR ERVK 0 322 1 5 1045 18118 150 30 22 chr5 60340507 60347329 -92189930 - ETnERV2-int LTR ERVK -271 7135 1 5 1045 2053 77 28 16 chr5 60347329 60347647 -92189612 - RLTRETN_Mm LTR ERVK 0 322 1 5 1045 507 17 0 0 chr5 60348294 60348354 -92188905 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1045 713 281 57 93 chr5 60348602 60348955 -92188304 - RLTR18B LTR ERVK -9 503 182 5 1045 622 297 76 70 chr5 60348951 60349266 -92187993 - RLTR18 LTR ERVK -286 330 14 5 1045 638 327 12 62 chr5 60349325 60349648 -92187611 - Lx8 LINE L1 -564 6909 6603 5 1045 379 309 83 11 chr5 60349659 60349839 -92187420 - Lx8 LINE L1 -928 6545 6353 5 1045 336 72 0 42 chr5 60349841 60349913 -92187346 + (TTATA)n Simple_repeat Simple_repeat 5 73 0 5 1045 1974 206 54 20 chr5 60350076 60350483 -92186776 - MTC LTR MaLR 0 421 1 5 1045 4466 227 94 32 chr5 60350486 60350682 -92186577 - MTC-int LTR MaLR -3 1255 1051 5 1045 5592 144 32 3 chr5 60350682 60351649 -92185610 - Lx3B LINE L1 -2 6971 5977 5 1045 4466 227 94 32 chr5 60351649 60352634 -92184625 - MTC-int LTR MaLR -208 1050 1 5 1045 1744 213 34 13 chr5 60352634 60353020 -92184239 - MTC LTR MaLR 0 394 1 5 1045 21 36 0 0 chr5 60353263 60353291 -92183968 + AT_rich Low_complexity Low_complexity 1 28 0 5 1045 579 293 5 39 chr5 60353383 60353589 -92183670 + Lx7 LINE L1 5588 5786 -1910 5 1045 359 263 0 31 chr5 60354127 60354225 -92183034 + MER2B DNA MER2_type 179 273 -63 5 1045 245 261 11 0 chr5 60354639 60354727 -92182532 + (TA)n Simple_repeat Simple_repeat 2 90 0 5 1045 1127 65 0 0 chr5 60355049 60355188 -92182071 - B1_Mus1 SINE Alu -9 139 1 5 1045 1020 323 80 28 chr5 60355583 60356118 -92181141 - Lx9 LINE L1 -268 7376 6814 5 1045 7707 59 14 7 chr5 60356266 60357301 -92179958 + L1_Mus1 LINE L1 5524 6567 0 5 1045 1060 8 16 0 chr5 60357711 60357840 -92179419 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 5 1045 216 287 0 33 chr5 60358009 60358099 -92179160 + GA-rich Low_complexity Low_complexity 4 90 0 5 1045 189 0 0 0 chr5 60359052 60359073 -92178186 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1045 2697 44 6 50 chr5 60360429 60360790 -92176469 - L1Md_F2 LINE L1 0 6582 6238 5 1045 1003 320 18 102 chr5 60361738 60362180 -92175079 + MTD LTR MaLR 15 419 0 5 1045 1381 328 80 45 chr5 60362591 60363693 -92173566 + Lx7 LINE L1 4653 5776 -104 5 1045 267 31 0 0 chr5 60363693 60363725 -92173534 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1045 1381 313 118 43 chr5 60363725 60363960 -92173299 + Lx7 LINE L1 5777 6045 -1651 5 1045 582 93 0 0 chr5 60364076 60364162 -92173097 + (CA)n Simple_repeat Simple_repeat 2 87 0 5 1045 344 364 22 14 chr5 60364207 60364430 -92172829 + Lx7 LINE L1 6234 6458 -1015 5 1045 23 33 0 0 chr5 60364657 60364687 -92172572 + AT_rich Low_complexity Low_complexity 1 30 0 5 1045 470 362 54 42 chr5 60364867 60365106 -92172153 + B4A SINE B4 47 288 -4 5 1045 291 28 0 0 chr5 60365127 60365163 -92172096 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1045 329 267 0 47 chr5 60365391 60365497 -92171762 + L1MC4 LINE L1 7738 7838 -204 5 1045 517 319 42 23 chr5 60365692 60365907 -92171352 + MLT2B2 LTR ERVL 12 230 -285 5 1045 252 226 0 0 chr5 60366095 60366157 -92171102 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1045 3814 111 84 0 chr5 60366251 60366914 -92170345 + L1_Mus4 LINE L1 5967 6636 0 5 1045 221 0 0 33 chr5 60367032 60367062 -92170197 + (TAA)n Simple_repeat Simple_repeat 1 29 0 5 1045 824 106 28 14 chr5 60367754 60367898 -92169361 - L1Md_F2 LINE L1 0 6582 6437 6 1045 1299 331 110 59 chr5 60368117 60368594 -92168665 - Lx8 LINE L1 -1 7472 6988 6 1045 378 114 0 0 chr5 60368594 60368664 -92168595 + (CA)n Simple_repeat Simple_repeat 2 71 0 6 1045 1299 331 110 59 chr5 60368664 60369352 -92167907 - Lx8 LINE L1 -486 6987 6248 6 1045 601 246 171 53 chr5 60370233 60370306 -92166953 + Lx7 LINE L1 7124 7206 -490 6 1045 261 57 0 0 chr5 60370306 60370341 -92166918 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 6 1045 601 246 171 53 chr5 60370341 60370512 -92166747 + Lx7 LINE L1 7207 7396 -300 6 1045 8910 96 12 24 chr5 60370506 60372541 -92164718 + L1Md_F3 LINE L1 433 2443 -3440 6 1045 13668 66 1 4 chr5 60372530 60374334 -92162925 + L1Md_F3 LINE L1 3788 5584 -299 6 1045 8183 42 0 0 chr5 60374340 60375318 -92161941 + L1Md_F3 LINE L1 5591 6568 -16 6 1045 636 228 38 114 chr5 60375325 60375642 -92161617 + Lx7 LINE L1 7389 7681 -15 6 1045 283 171 13 13 chr5 60375732 60375809 -92161450 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1045 282 295 44 9 chr5 60376061 60376174 -92161085 - MLT2C2 LTR ERVL -331 133 17 6 1045 1207 283 43 11 chr5 60376203 60376553 -92160706 - Lx9 LINE L1 -794 6850 6490 6 1045 244 271 0 0 chr5 60376554 60376613 -92160646 + Lx9 LINE L1 6862 6920 -724 6 1045 2920 221 83 31 chr5 60377571 60378271 -92158988 - Lx6 LINE L1 -5 7455 6720 6 1045 549 311 37 32 chr5 60378595 60378784 -92158475 - B3A SINE B2 0 198 9 6 1045 3282 226 76 20 chr5 60378848 60379633 -92157626 - Lx5 LINE L1 -44 7006 6178 6 1045 21 36 0 0 chr5 60379883 60379911 -92157348 + AT_rich Low_complexity Low_complexity 1 28 0 6 1045 23 0 0 0 chr5 60381120 60381143 -92156116 + AT_rich Low_complexity Low_complexity 1 23 0 6 1045 384 22 0 0 chr5 60382122 60382167 -92155092 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1045 235 298 0 0 chr5 60382635 60382692 -92154567 + tRNA-Ala-GCY_ tRNA tRNA 11 67 -8 6 1045 1680 145 9 84 chr5 60382990 60383322 -92153937 + ORR1A2 LTR MaLR 13 319 -8 6 1045 2625 231 101 14 chr5 60383326 60384467 -92152792 - Lx6 LINE L1 -1142 6318 5078 6 1045 2826 231 79 54 chr5 60384462 60385862 -92151397 - Lx6 LINE L1 -3669 2211 859 6 1045 264 354 38 38 chr5 60385914 60386234 -92151025 - Lx6 LINE L1 -7305 423 104 6 1045 28 48 0 0 chr5 60386268 60386310 -92150949 + AT_rich Low_complexity Low_complexity 1 42 0 6 1045 524 314 60 94 chr5 60386559 60386826 -92150433 + B4A SINE B4 26 283 -9 6 1045 1249 252 32 67 chr5 60386990 60387394 -92149865 + RMER10A LTR ERVL 1 390 -52 6 1045 227 346 57 35 chr5 60387554 60387695 -92149564 - MLT1D LTR MaLR -361 144 1 6 1045 363 23 0 0 chr5 60388554 60388598 -92148661 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 6 1045 24 32 0 0 chr5 60390250 60390281 -92146978 + AT_rich Low_complexity Low_complexity 1 31 0 6 1045 450 0 0 0 chr5 60391191 60391241 -92146018 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1045 248 332 106 15 chr5 60392625 60392964 -92144295 - Lx9 LINE L1 -50 7594 7225 6 1045 24 85 0 0 chr5 60393340 60393399 -92143860 + AT_rich Low_complexity Low_complexity 1 59 0 6 1045 998 136 6 0 chr5 60394000 60394169 -92143090 + (TTTC)n Simple_repeat Simple_repeat 3 172 0 6 1045 3007 168 124 8 chr5 60394189 60394993 -92142266 - Lx4A LINE L1 -162 6896 5999 6 1045 4131 107 43 2 chr5 60395007 60395635 -92141624 - Lx3_Mus LINE L1 -1 7008 6355 6 1045 3948 112 7 8 chr5 60395636 60396229 -92141030 + Lx3_Mus LINE L1 5779 6370 -639 6 1045 4337 161 41 60 chr5 60396226 60397274 -92139985 - Lx4A LINE L1 -1046 6012 4945 6 1045 5396 92 14 2 chr5 60397271 60398408 -92138851 - L1_Mus1 LINE L1 0 6582 5381 6 1045 4644 162 49 19 chr5 60398408 60399284 -92137975 - RLTR13D6 LTR ERVK 0 902 1 6 1045 7332 91 20 2 chr5 60399284 60399922 -92137337 - L1_Mus1 LINE L1 -497 5386 4737 6 1045 632 30 10 29 chr5 60399922 60400024 -92137235 + (TTTTG)n Simple_repeat Simple_repeat 2 101 0 6 1045 7332 91 20 2 chr5 60400024 60400459 -92136800 - L1_Mus1 LINE L1 -1147 4736 4295 6 1045 1142 69 34 11 chr5 60400459 60400636 -92136623 - L1_Mus1 LINE L1 -4111 1772 1592 6 1045 2678 162 61 27 chr5 60400609 60401167 -92136092 - L1_Mur2 LINE L1 -950 4927 4351 6 1045 22 35 0 0 chr5 60401196 60401225 -92136034 + AT_rich Low_complexity Low_complexity 1 29 0 6 1045 312 178 0 0 chr5 60401233 60401306 -92135953 + (TA)n Simple_repeat Simple_repeat 2 74 0 6 1045 213 65 0 0 chr5 60401334 60401365 -92135894 + (CAGAGA)n Simple_repeat Simple_repeat 6 36 0 6 1045 8105 36 0 37 chr5 60401730 60403333 -92133926 - L1Md_F2 LINE L1 -2 6580 5038 6 1045 384 82 0 0 chr5 60403376 60403437 -92133822 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 6 1045 951 311 59 12 chr5 60403532 60403871 -92133388 + ORR1D1 LTR MaLR 1 355 -19 6 1045 373 360 72 40 chr5 60404052 60404480 -92132779 - Lx8 LINE L1 -74 7399 6958 6 1045 856 302 119 15 chr5 60404480 60404834 -92132425 - MTD LTR MaLR -9 410 15 6 1045 276 371 34 25 chr5 60404838 60405076 -92132183 - Lx8 LINE L1 -506 6967 6728 6 1045 438 337 93 47 chr5 60405229 60405724 -92131535 - Lx8 LINE L1 -989 6484 5967 6 1045 330 279 17 11 chr5 60405749 60405923 -92131336 - L1_Mur3 LINE L1 -3392 2488 2314 6 1045 6976 131 29 4 chr5 60405922 60407530 -92129729 + Lx LINE L1 4997 6647 -7 6 1045 528 16 0 0 chr5 60407709 60407770 -92129489 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1045 375 23 0 0 chr5 60407770 60407813 -92129446 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1045 532 326 26 44 chr5 60407842 60408071 -92129188 - L1_Mur3 LINE L1 -4026 1854 1633 6 1045 6547 47 1 0 chr5 60408071 60408873 -92128386 - L1Md_F2 LINE L1 -12 6570 5768 6 1045 532 324 65 40 chr5 60408873 60409071 -92128188 - L1_Mur3 LINE L1 -4208 1639 1423 6 1045 706 278 37 106 chr5 60410261 60410583 -92126676 - Lx9 LINE L1 -571 7073 6774 6 1045 700 291 114 3 chr5 60410589 60410930 -92126329 + Lx9 LINE L1 7259 7637 -7 6 1045 1101 81 117 6 chr5 60411801 60411963 -92125296 + B2_Mm2 SINE B2 2 181 -14 6 1045 367 350 50 19 chr5 60412660 60412820 -92124439 - ORR1E LTR MaLR -194 165 1 6 1045 972 387 112 41 chr5 60412820 60414244 -92123015 - MTE-int LTR MaLR -53 1527 1 6 1045 423 354 51 84 chr5 60414268 60414579 -92122680 - ORR1E LTR MaLR -55 304 4 6 1045 3670 188 9 16 chr5 60414979 60415736 -92121523 - L1_Mur2 LINE L1 -630 5247 4496 6 1045 1138 115 11 0 chr5 60415738 60415921 -92121338 + L1_Mm LINE L1 5261 5445 -438 6 1045 1563 37 5 0 chr5 60415938 60416129 -92121130 - MTA_Mm LTR MaLR 0 396 205 6 1045 324 272 22 0 chr5 60416818 60416910 -92120349 - ID_B1 SINE B4 -1 223 130 6 1045 213 313 209 0 chr5 60416910 60416933 -92120326 - B1F SINE Alu -1 148 10 6 1045 3055 132 4 12 chr5 60417256 60417739 -92119520 + Lx LINE L1 6171 6649 -5 6 1045 561 341 11 6 chr5 60417851 60418028 -92119231 + B3A SINE B2 3 180 -18 6 1045 321 435 0 0 chr5 60418091 60418252 -92119007 - RSINE1 SINE B4 -2 163 3 6 1045 27 0 0 0 chr5 60419311 60419338 -92117921 + AT_rich Low_complexity Low_complexity 1 27 0 6 1045 21 0 0 0 chr5 60420747 60420768 -92116491 + AT_rich Low_complexity Low_complexity 1 21 0 6 1045 1330 174 5 0 chr5 60420811 60421035 -92116224 - URR1B DNA MER1_type 0 225 1 6 1045 21 0 0 0 chr5 60421582 60421603 -92115656 + AT_rich Low_complexity Low_complexity 1 21 0 6 1045 223 71 48 0 chr5 60423242 60423284 -92113975 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1045 234 0 0 0 chr5 60423540 60423566 -92113693 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 6 1045 565 312 11 44 chr5 60423587 60423768 -92113491 - B3A SINE B2 -18 180 6 6 130 848 280 81 15 chr5 60424050 60424405 -92112854 + MTD LTR MaLR 13 417 -2 6 1046 3391 84 43 4 chr5 60424420 60424908 -92112351 - L1Md_F2 LINE L1 0 6582 6076 6 1046 5030 99 55 6 chr5 60424996 60426438 -92110821 + L1VL2 LINE L1 168 1692 -1923 6 1046 22 56 0 0 chr5 60427118 60427154 -92110105 + AT_rich Low_complexity Low_complexity 1 36 0 6 1046 1041 89 0 0 chr5 60427303 60427438 -92109821 + B1_Mus1 SINE Alu 1 135 -13 6 1046 216 0 0 0 chr5 60427438 60427462 -92109797 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1046 260 65 0 42 chr5 60427555 60427603 -92109656 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 6 1046 535 330 0 16 chr5 60427836 60428018 -92109241 + Lx6 LINE L1 7256 7434 -26 6 1046 369 62 0 0 chr5 60428199 60428247 -92109012 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 6 1046 669 25 0 0 chr5 60429390 60429469 -92107790 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1046 204 40 0 0 chr5 60429707 60429732 -92107527 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1046 351 44 0 0 chr5 60429733 60429778 -92107481 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1046 4295 178 36 11 chr5 60430193 60431051 -92106208 + Lx2B LINE L1 6119 6998 -2 6 1046 3578 75 17 0 chr5 60431418 60431888 -92105371 - L1_Mus1 LINE L1 0 6567 6090 6 1046 382 248 99 0 chr5 60432681 60432802 -92104457 + Lx2 LINE L1 6845 6977 -20 6 1046 3247 150 4 4 chr5 60432797 60433333 -92103926 - L1_Mur2 LINE L1 -201 5676 5141 6 1046 2210 135 0 25 chr5 60433333 60433689 -92103570 + Lx2A1 LINE L1 6634 6980 -28 6 1046 234 178 13 52 chr5 60433696 60433773 -92103486 + A-rich Low_complexity Low_complexity 1 74 0 6 1046 229 286 18 9 chr5 60433871 60433984 -92103275 - Lx6 LINE L1 -210 7250 7137 6 1046 3040 247 35 94 chr5 60434342 60435257 -92102002 - Lx6 LINE L1 -289 7171 6311 6 1046 5977 142 60 8 chr5 60435283 60436329 -92100930 - Lx2 LINE L1 -1 6996 5896 6 1046 387 267 78 2 chr5 60438181 60438296 -92098963 + ORR1B2 LTR MaLR 169 301 -73 6 1046 249 273 117 0 chr5 60438323 60438400 -92098859 + RMER1B Other Other 3 88 -978 6 1046 2448 258 35 116 chr5 60438405 60439469 -92097790 + RMER1B Other Other 65 1042 -24 6 1046 21 71 0 0 chr5 60439487 60439529 -92097730 + AT_rich Low_complexity Low_complexity 1 42 0 6 1046 217 374 75 0 chr5 60440019 60440126 -92097133 - MIR SINE MIR -128 134 20 6 1046 24 0 0 0 chr5 60441232 60441256 -92096003 + AT_rich Low_complexity Low_complexity 1 24 0 6 1046 336 24 0 0 chr5 60441553 60441594 -92095665 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1046 180 0 0 0 chr5 60443078 60443098 -92094161 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1046 1071 102 0 0 chr5 60443103 60443250 -92094009 - B1_Mus2 SINE Alu 0 147 1 6 1046 353 295 30 108 chr5 60443516 60443888 -92093371 - Lx9 LINE L1 0 7644 7302 6 1046 1136 74 0 13 chr5 60443916 60444066 -92093193 - B1_Mus1 SINE Alu 0 148 1 6 1046 473 343 6 24 chr5 60444110 60444358 -92092901 - Lx9 LINE L1 -375 7269 6893 6 1046 686 263 136 0 chr5 60444437 60444650 -92092609 + Lx9 LINE L1 6713 6954 -690 7 1046 637 127 0 0 chr5 60445422 60445532 -92091727 + L1_Mus2 LINE L1 6455 6564 -2 7 1046 4026 85 48 2 chr5 60446227 60446806 -92090453 - L1_Mus3 LINE L1 -8 6630 6025 7 1046 1806 72 9 131 chr5 60446798 60447134 -92090125 + L1_Mus3 LINE L1 6338 6632 -6 7 1046 33 25 0 0 chr5 60447425 60447465 -92089794 + AT_rich Low_complexity Low_complexity 1 40 0 7 1046 3701 98 51 11 chr5 60447678 60447999 -92089260 + L1_Mus3 LINE L1 6047 6368 -270 7 1046 2591 55 61 0 chr5 60447999 60448325 -92088934 + ORR1A1 LTR MaLR 1 346 0 7 1046 3701 98 51 11 chr5 60448325 60448567 -92088692 + L1_Mus3 LINE L1 6369 6633 -5 7 1046 4557 42 5 0 chr5 60449188 60449742 -92087517 + L1Md_F3 LINE L1 6027 6583 -1 7 1046 2539 90 16 10 chr5 60449824 60450207 -92087052 - L1_Mus3 LINE L1 0 6638 6254 7 1046 236 92 0 71 chr5 60450264 60450334 -92086925 + (TTTG)n Simple_repeat Simple_repeat 4 68 0 7 1046 207 125 0 0 chr5 60450685 60450725 -92086534 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 7 1046 21 57 0 0 chr5 60450868 60450903 -92086356 + AT_rich Low_complexity Low_complexity 1 35 0 7 1046 262 352 91 41 chr5 60451473 60451716 -92085543 + MLT1D LTR MaLR 251 505 0 7 1046 338 213 16 129 chr5 60451799 60451923 -92085336 + MT2B LTR ERVL 155 264 -337 7 1046 949 126 7 0 chr5 60451813 60451956 -92085303 + B1_Mus1 SINE Alu 4 147 -1 7 1046 811 142 7 7 chr5 60451969 60452118 -92085141 + GA-rich Low_complexity Low_complexity 2 150 0 7 1046 262 295 0 35 chr5 60454556 60454672 -92082587 + (CATATA)n Simple_repeat Simple_repeat 6 117 0 7 1046 32 26 0 0 chr5 60455189 60455228 -92082031 + AT_rich Low_complexity Low_complexity 1 39 0 7 1046 26 30 0 0 chr5 60455484 60455517 -92081742 + AT_rich Low_complexity Low_complexity 1 33 0 7 1046 264 226 58 5 chr5 60456070 60456159 -92081100 - MTD LTR MaLR -15 404 294 7 1046 651 143 15 15 chr5 60456240 60456375 -92080884 + GA-rich Low_complexity Low_complexity 2 136 0 7 1046 271 256 23 11 chr5 60456388 60456475 -92080784 + GA-rich Low_complexity Low_complexity 1 88 0 7 1046 246 81 0 0 chr5 60456992 60457029 -92080230 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1046 220 299 0 82 chr5 60457274 60457347 -92079912 + B4 SINE B4 26 92 -200 7 1046 21 0 0 0 chr5 60458422 60458443 -92078816 + AT_rich Low_complexity Low_complexity 1 21 0 7 1046 486 330 87 16 chr5 60458960 60459145 -92078114 - B3 SINE B2 -17 199 2 7 1046 899 194 13 84 chr5 60459774 60459999 -92077260 - RLTR28 LTR ERVL 0 524 316 7 1046 3338 43 2 0 chr5 60460323 60460718 -92076541 + MTA_Mm LTR MaLR 1 396 0 7 1046 1188 46 0 0 chr5 60460718 60460869 -92076390 + MTA_Mm-int LTR MaLR 1 151 -947 7 1046 7257 17 0 0 chr5 60460869 60461701 -92075558 - L1Md_T LINE L1 -193 5690 4859 7 1046 8094 5 0 0 chr5 60461701 60462599 -92074660 + L1Md_T LINE L1 5685 6582 0 7 1046 7809 29 2 0 chr5 60462616 60463575 -92073684 + MTA_Mm-int LTR MaLR 138 1098 0 7 1046 3412 30 2 0 chr5 60463575 60463970 -92073289 + MTA_Mm LTR MaLR 1 396 0 7 1046 1600 187 47 0 chr5 60464710 60465010 -92072249 - RLTR28 LTR ERVL -210 314 1 7 1046 605 335 37 64 chr5 60465694 60466102 -92071157 - MER67D LTR ERV1 -111 403 7 7 1046 1752 154 7 0 chr5 60466172 60466451 -92070808 - Lx3B LINE L1 -414 6559 6279 7 1046 2204 175 57 42 chr5 60466436 60466889 -92070370 + Lx3B LINE L1 6514 6973 0 7 1046 239 0 32 0 chr5 60467632 60467663 -92069596 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 7 1046 475 292 14 49 chr5 60467684 60467828 -92069431 + B1_Mur2 SINE Alu 3 141 -8 7 1046 7236 85 14 19 chr5 60468352 60469380 -92067879 + RLTR13D5 LTR ERVK 1 1023 0 7 1046 231 396 10 0 chr5 60469429 60469530 -92067729 - PB1D10 SINE Alu -4 113 12 7 1046 1632 105 63 7 chr5 60469754 60470023 -92067236 - Lx LINE L1 0 6654 6371 7 1046 404 284 18 27 chr5 60470906 60471018 -92066241 + Lx6 LINE L1 7040 7150 -310 7 1046 619 188 17 11 chr5 60471516 60471694 -92065565 + CT-rich Low_complexity Low_complexity 2 180 0 7 1046 282 29 0 0 chr5 60472926 60472961 -92064298 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1046 270 148 0 0 chr5 60472961 60473015 -92064244 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1046 969 172 0 0 chr5 60473329 60473509 -92063750 + CT-rich Low_complexity Low_complexity 1 180 0 7 1046 2135 124 51 25 chr5 60473518 60473874 -92063385 - Lx3A LINE L1 -3 6978 6614 7 1046 25 95 0 0 chr5 60475178 60475252 -92062007 + AT_rich Low_complexity Low_complexity 1 74 0 7 1046 21 36 0 0 chr5 60475334 60475362 -92061897 + AT_rich Low_complexity Low_complexity 1 28 0 7 1046 813 322 57 30 chr5 60475389 60475722 -92061537 + ORR1D2 LTR MaLR 29 370 0 7 1046 206 270 22 0 chr5 60476090 60476179 -92061080 + (TTG)n Simple_repeat Simple_repeat 2 92 0 7 1046 471 315 23 74 chr5 60476185 60476413 -92060846 - B4 SINE B4 -69 223 9 7 1046 2960 163 104 62 chr5 60476413 60476601 -92060658 + Lx LINE L1 5216 5366 -517 7 1046 1170 48 0 0 chr5 60476601 60476747 -92060512 - B1_Mm SINE Alu 0 147 2 7 1046 6856 134 31 14 chr5 60476747 60477956 -92059303 + Lx LINE L1 5367 6654 0 7 1046 2950 81 8 2 chr5 60479219 60479617 -92057642 - MTB LTR MaLR 0 400 1 7 1046 342 296 165 18 chr5 60479620 60480007 -92057252 - Lx7 LINE L1 -1816 5880 5428 7 1046 32 0 0 0 chr5 60480621 60480653 -92056606 + AT_rich Low_complexity Low_complexity 1 32 0 7 1046 267 31 0 0 chr5 60480751 60480783 -92056476 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 7 1046 23 0 0 0 chr5 60481363 60481386 -92055873 + AT_rich Low_complexity Low_complexity 1 23 0 7 1046 381 325 99 76 chr5 60481637 60481978 -92055281 - MLT1A0 LTR MaLR -18 390 4 7 1046 739 280 5 24 chr5 60481994 60482199 -92055060 + B3 SINE B2 2 202 -14 7 1046 23 0 0 0 chr5 60482236 60482259 -92055000 + AT_rich Low_complexity Low_complexity 1 23 0 7 1046 289 258 0 0 chr5 60482445 60482511 -92054748 + Lx8 LINE L1 6284 6349 -1124 7 1046 987 282 70 46 chr5 60482513 60482904 -92054355 - MTD LTR MaLR -14 405 6 7 1046 1271 374 50 17 chr5 60482939 60483742 -92053517 + Lx8 LINE L1 6359 7187 -286 7 1046 513 0 0 0 chr5 60484434 60484491 -92052768 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1046 351 0 0 0 chr5 60484980 60485019 -92052240 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1046 21 0 0 0 chr5 60485882 60485903 -92051356 + AT_rich Low_complexity Low_complexity 1 21 0 7 1046 266 323 23 85 chr5 60486158 60486334 -92050925 - B4A SINE B4 -121 171 7 7 1046 234 0 0 0 chr5 60487316 60487342 -92049917 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1046 611 409 41 51 chr5 60487353 60487647 -92049612 + MTE2b LTR MaLR 2 292 -87 7 1046 380 184 13 33 chr5 60488044 60488196 -92049063 + (TA)n Simple_repeat Simple_repeat 2 150 0 7 1046 1695 139 9 59 chr5 60488350 60488687 -92048572 + RLTRETN_Mm LTR ERVK 1 320 -2 7 1046 216 182 15 29 chr5 60489216 60489284 -92047975 + (TA)n Simple_repeat Simple_repeat 1 67 0 7 1046 1295 76 0 0 chr5 60489284 60489456 -92047803 + L1_Mus1 LINE L1 6396 6567 0 7 1046 2895 167 38 55 chr5 60489545 60489732 -92047527 - Lx4A LINE L1 -879 6179 6006 7 1046 1024 110 7 0 chr5 60489732 60489878 -92047381 - B1_Mus1 SINE Alu 0 148 2 7 1046 2926 126 141 13 chr5 60489878 60490510 -92046749 - Lx4A LINE L1 -1053 6005 5292 7 1046 690 111 178 0 chr5 60490623 60490758 -92046501 + L1_Mus4 LINE L1 6478 6636 0 7 1046 24 77 0 0 chr5 60490758 60490810 -92046449 + AT_rich Low_complexity Low_complexity 1 52 0 7 1046 21 107 0 0 chr5 60490819 60490903 -92046356 + AT_rich Low_complexity Low_complexity 1 84 0 7 1046 265 303 52 13 chr5 60491216 60491293 -92045966 - B1F1 SINE Alu -46 103 24 7 1046 422 368 12 6 chr5 60491306 60491470 -92045789 + Tigger5 DNA MER2_type 91 255 -2151 7 1046 2046 244 59 64 chr5 60491487 60492084 -92045175 - RMER1C Other Other -3 1339 450 7 1046 2240 121 12 0 chr5 60492084 60492407 -92044852 + ORR1A2 LTR MaLR 1 327 0 7 1046 397 393 6 0 chr5 60492407 60492447 -92044812 - RMER1C Other Other -893 449 409 7 1046 23 78 0 0 chr5 60493391 60493442 -92043817 + AT_rich Low_complexity Low_complexity 1 51 0 7 1046 2221 47 4 4 chr5 60493887 60494168 -92043091 + L1Md_F3 LINE L1 6301 6581 -3 7 1046 425 358 97 48 chr5 60494236 60494547 -92042712 + MLT1F2 LTR MaLR 70 395 -165 7 1046 357 283 102 131 chr5 60494548 60494784 -92042475 + MLT2C2 LTR ERVL 3 231 -233 7 1046 180 179 0 0 chr5 60495179 60495218 -92042041 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1046 371 314 28 35 chr5 60495286 60495431 -92041828 + MLT1F2 LTR MaLR 537 680 0 7 1046 31 0 0 0 chr5 60495478 60495509 -92041750 + AT_rich Low_complexity Low_complexity 1 31 0 7 1046 19034 102 3 3 chr5 60496212 60499705 -92037554 - L1_Mus1 LINE L1 -13 6554 3062 7 1046 2231 50 3 0 chr5 60499700 60500000 -92037259 - L1VL1 LINE L1 -5343 1079 779 7 1046 2996 132 52 13 chr5 60500000 60500546 -92036713 - L1VL1 LINE L1 -5661 757 136 1 1046 641 302 43 28 chr5 60500664 60500875 -92036384 + ORR1D1 LTR MaLR 1 214 -160 2 1046 242 85 50 17 chr5 60500928 60500988 -92036271 + (TTA)n Simple_repeat Simple_repeat 1 62 0 3 1046 362 243 7 14 chr5 60500990 60501128 -92036131 + Lx7 LINE L1 7406 7542 -154 4 1046 757 209 0 7 chr5 60501156 60501305 -92035954 + B1_Mur4 SINE Alu 2 149 -1 5 1046 225 235 247 0 chr5 60501824 60501909 -92035350 + ORR1D1 LTR MaLR 269 374 0 2 1046 2893 267 26 8 chr5 60501910 60502651 -92034608 + ORR1D1-int LTR MaLR 2 755 -615 2 1046 1149 286 59 23 chr5 60502663 60503017 -92034242 + ORR1D1-int LTR MaLR 815 1181 -189 2 1046 399 284 0 0 chr5 60503021 60503102 -92034157 - RLTR18B LTR ERVK -5 507 427 6 1046 226 229 0 0 chr5 60503248 60503296 -92033963 + ORR1D1 LTR MaLR 321 368 -2 2 1046 833 333 35 10 chr5 60503388 60503700 -92033559 - Lx8 LINE L1 -144 7329 7010 7 1046 1395 284 44 114 chr5 60503715 60504423 -92032836 + RMER19C LTR ERVK 10 737 0 8 1046 297 0 0 0 chr5 60504976 60505009 -92032250 + (TA)n Simple_repeat Simple_repeat 1 33 0 9 1046 510 17 0 0 chr5 60505013 60505072 -92032187 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 1 1046 344 337 73 6 chr5 60505740 60505919 -92031340 - MER57C2 LTR ERV1 -8 426 236 1 1046 1672 225 11 90 chr5 60505982 60506426 -92030833 + MTC LTR MaLR 1 409 -12 1 1046 271 347 90 64 chr5 60506452 60506640 -92030619 + B3A SINE B2 1 193 -5 1 1046 21 0 0 0 chr5 60506720 60506741 -92030518 + AT_rich Low_complexity Low_complexity 1 21 0 1 1046 281 118 20 0 chr5 60506995 60507046 -92030213 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1046 333 141 11 23 chr5 60507068 60507155 -92030104 + (TA)n Simple_repeat Simple_repeat 1 86 0 1 1046 8452 29 1 0 chr5 60508104 60509163 -92028096 - L1Md_T LINE L1 -1 6581 5522 1 1046 1179 128 148 60 chr5 60509356 60509487 -92027772 + Lx3A LINE L1 6051 6186 -795 1 1046 585 132 0 0 chr5 60509487 60509578 -92027681 + 4.5SRNA scRNA scRNA 1 91 -3 1 1046 952 111 15 0 chr5 60509578 60509713 -92027546 + B1_Mus2 SINE Alu 2 138 -9 2 1046 229 26 26 26 chr5 60509713 60509752 -92027507 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1046 1179 128 148 60 chr5 60509752 60509901 -92027358 + Lx3A LINE L1 6187 6356 -625 1 1046 4876 125 4 1 chr5 60509897 60510770 -92026489 - L1_Mus3 LINE L1 -601 5965 5089 2 1046 4317 94 33 0 chr5 60510770 60511407 -92025852 + L1_Mus3 LINE L1 5980 6637 -1 2 1046 3366 136 78 8 chr5 60511426 60512012 -92025247 + Lx3A LINE L1 6348 6974 -7 1 1046 687 90 0 10 chr5 60512178 60512279 -92024980 - B2_Mm2 SINE B2 -88 107 8 2 1046 223 163 0 0 chr5 60512582 60512625 -92024634 + GA-rich Low_complexity Low_complexity 1 43 0 2 1046 2092 244 168 7 chr5 60512737 60513341 -92023918 + RMER1B Other Other 185 918 -148 2 1046 308 0 71 0 chr5 60513341 60513383 -92023876 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 2 1046 2092 233 162 7 chr5 60513383 60513488 -92023771 + RMER1B Other Other 919 1062 -4 2 1046 50 75 0 0 chr5 60513513 60513619 -92023640 + AT_rich Low_complexity Low_complexity 1 106 0 2 1046 288 342 49 54 chr5 60513634 60513838 -92023421 + Lx8 LINE L1 6196 6398 -1075 2 1046 418 154 0 0 chr5 60513838 60513903 -92023356 + B2_Mm2 SINE B2 2 66 -129 2 1046 274 229 8 8 chr5 60514211 60514334 -92022925 + (TA)n Simple_repeat Simple_repeat 1 123 0 3 1046 226 246 0 14 chr5 60514349 60514423 -92022836 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 1046 312 264 91 0 chr5 60515138 60515259 -92022000 + Lx8 LINE L1 6050 6181 -1292 3 1046 250 167 45 0 chr5 60515270 60515336 -92021923 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1046 3145 120 11 58 chr5 60515450 60516024 -92021235 - L1_Mur1 LINE L1 -1847 4039 3493 3 1046 783 219 97 55 chr5 60516116 60516333 -92020926 - URR1A DNA MER1_type 0 226 1 3 1046 1113 83 14 0 chr5 60516552 60516697 -92020562 + B1_Mm SINE Alu 1 147 0 3 1046 264 120 0 0 chr5 60516698 60516748 -92020511 + (CAAAAA)n Simple_repeat Simple_repeat 3 52 0 3 1046 531 38 38 0 chr5 60517040 60517119 -92020140 + L1Md_F2 LINE L1 6501 6582 0 3 1046 2110 184 76 39 chr5 60517291 60517828 -92019431 + RMER6C LTR ERVK 5 561 -129 3 1046 723 16 31 39 chr5 60517873 60518003 -92019256 + (GGAGA)n Simple_repeat Simple_repeat 3 131 0 3 1046 327 364 54 5 chr5 60518054 60518239 -92019020 - MLT2D LTR ERVL -218 196 3 4 1046 5362 145 14 27 chr5 60518393 60519326 -92017933 - Lx2 LINE L1 0 6997 6077 4 1046 1223 217 251 52 chr5 60519678 60520276 -92016983 + RMER6C LTR ERVK 3 697 -59 4 1046 314 269 32 0 chr5 60520359 60520452 -92016807 + PB1D9 SINE Alu 25 120 0 4 1046 782 133 14 14 chr5 60521509 60521654 -92015605 - RMER6-int LTR ERVK -443 2734 2590 4 1046 285 281 0 0 chr5 60521654 60521718 -92015541 - LSU-rRNA_Hsa rRNA rRNA -3195 1840 1777 4 1046 1532 181 10 29 chr5 60521718 60522025 -92015234 - RMER6-int LTR ERVK -660 2517 2217 4 1046 1723 212 31 33 chr5 60522052 60522506 -92014753 - RMER6-int LTR ERVK -1046 2131 1679 4 1046 2036 195 10 20 chr5 60522545 60522943 -92014316 + ORR1B1 LTR MaLR 1 394 0 4 1046 310 178 151 0 chr5 60522952 60523025 -92014234 - RMER6-int LTR ERVK -1588 1589 1506 4 1046 2359 204 54 14 chr5 60523035 60523532 -92013727 - RLTR12B LTR ERVK -11 517 1 4 1046 23 0 0 0 chr5 60523723 60523746 -92013513 + AT_rich Low_complexity Low_complexity 1 23 0 4 1046 1741 248 47 84 chr5 60525592 60525724 -92011535 - RMER20B LTR ERVK -28 599 465 4 1046 576 0 0 0 chr5 60525724 60525788 -92011471 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1046 1741 248 47 84 chr5 60525788 60526272 -92010987 - RMER20B LTR ERVK -163 464 6 4 1046 705 153 16 0 chr5 60526586 60526710 -92010549 - L1_Mm LINE L1 -1487 4396 4271 5 1046 2857 107 19 35 chr5 60526710 60527173 -92010086 + Lx2 LINE L1 6450 6905 -92 5 1046 1161 198 16 8 chr5 60527416 60527660 -92009599 + Lx LINE L1 6402 6647 -7 5 1046 34 24 0 0 chr5 60527732 60527773 -92009486 + AT_rich Low_complexity Low_complexity 1 41 0 5 1046 2800 42 0 3 chr5 60528864 60529202 -92008057 + IAPLTR1a_Mm LTR ERVK 1 337 0 5 1046 318 288 62 0 chr5 60529520 60529600 -92007659 - MER5A DNA MER1_type -1 188 104 5 1046 252 0 0 0 chr5 60529626 60529654 -92007605 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 5 1046 193 319 33 49 chr5 60531874 60531996 -92005263 - MIRb SINE MIR -60 208 89 5 1046 524 248 0 99 chr5 60532095 60532256 -92005003 - B1_Mur4 SINE Alu -4 146 2 5 1046 236 295 59 44 chr5 60532389 60532524 -92004735 - MER5A1 DNA MER1_type -1 165 29 6 1046 602 271 142 46 chr5 60533115 60533312 -92003947 + B3 SINE B2 1 216 0 6 1046 321 172 0 0 chr5 60534985 60535049 -92002210 + CT-rich Low_complexity Low_complexity 3 66 0 6 1046 245 281 0 15 chr5 60535059 60535124 -92002135 + T-rich Low_complexity Low_complexity 4 67 0 6 1046 282 29 0 0 chr5 60535404 60535439 -92001820 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1046 419 315 85 49 chr5 60536187 60536434 -92000825 + LTR48B LTR ERV1 123 378 -266 6 1046 252 322 94 78 chr5 60536451 60536643 -92000616 + LTR48B LTR ERV1 587 781 -6 6 1046 416 91 15 0 chr5 60536758 60536824 -92000435 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1046 322 311 10 7 chr5 60538200 60538334 -91998925 + L1_Mur3 LINE L1 4804 4970 -1173 6 1046 22 56 0 0 chr5 60538482 60538518 -91998741 + AT_rich Low_complexity Low_complexity 1 36 0 6 1046 231 297 83 17 chr5 60540149 60540269 -91996990 - MER2 DNA MER2_type -50 295 168 6 1046 2263 273 42 15 chr5 60540366 60541049 -91996210 + Lx9 LINE L1 6330 7031 -613 7 1046 375 298 100 128 chr5 60541285 60541691 -91995568 - MLT1C LTR MaLR -7 460 1 7 1046 24 0 0 0 chr5 60541846 60541870 -91995389 + AT_rich Low_complexity Low_complexity 1 24 0 7 1046 22 56 0 0 chr5 60542025 60542061 -91995198 + AT_rich Low_complexity Low_complexity 1 36 0 7 1046 22 70 0 0 chr5 60542513 60542556 -91994703 + AT_rich Low_complexity Low_complexity 1 43 0 7 1046 26 30 0 0 chr5 60543033 60543066 -91994193 + AT_rich Low_complexity Low_complexity 1 33 0 7 1046 326 265 88 0 chr5 60543284 60543386 -91993873 - Lx8 LINE L1 -741 6732 6622 7 1046 33 43 0 0 chr5 60543461 60543508 -91993751 + AT_rich Low_complexity Low_complexity 1 47 0 7 1046 206 191 24 0 chr5 60543578 60543620 -91993639 + (TA)n Simple_repeat Simple_repeat 1 43 0 7 1046 222 37 0 0 chr5 60544619 60544646 -91992613 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1046 245 206 202 20 chr5 60544836 60544935 -91992324 - PB1D7 SINE Alu 0 120 4 8 1046 541 332 97 37 chr5 60545409 60545759 -91991500 + MLT1E2 LTR MaLR 225 595 -32 8 1046 482 190 0 0 chr5 60545804 60545883 -91991376 + MT2B LTR ERVL 181 259 -342 8 1046 377 195 11 79 chr5 60545887 60545976 -91991283 + MT2B2 LTR ERVL 155 237 -347 8 1046 307 404 30 0 chr5 60545899 60545998 -91991261 + B4A SINE B4 88 189 -103 8 1046 1415 203 65 26 chr5 60546013 60546352 -91990907 + RMER6C LTR ERVK 339 690 0 8 1046 21 36 0 0 chr5 60546479 60546507 -91990752 + AT_rich Low_complexity Low_complexity 1 28 0 8 1046 29 47 0 0 chr5 60546821 60546864 -91990395 + AT_rich Low_complexity Low_complexity 1 43 0 8 1046 719 305 91 16 chr5 60547136 60547443 -91989816 - MTD LTR MaLR -69 350 21 8 1046 540 273 27 46 chr5 60547574 60547793 -91989466 + B3 SINE B2 1 215 -1 8 1046 38435 5 1 0 chr5 60547910 60553280 -91983979 + L1Md_A LINE L1 215 5586 -297 9 1046 9016 3 0 0 chr5 60553280 60554276 -91982983 + L1Md_A LINE L1 5587 6582 0 9 1046 883 244 71 17 chr5 60554440 60554678 -91982581 + RMER5 LTR ERV1 20 270 -264 9 1046 932 234 37 16 chr5 60554778 60555021 -91982238 + RMER5 LTR ERV1 260 507 -27 9 1047 40 21 0 0 chr5 60555575 60555622 -91981637 + AT_rich Low_complexity Low_complexity 1 47 0 9 1047 184 260 163 47 chr5 60555790 60555919 -91981340 + L3 LINE CR1 3266 3409 -1080 9 1047 1171 196 4 9 chr5 60556095 60556321 -91980938 - URR1B DNA MER1_type 0 225 1 9 1047 28 29 0 0 chr5 60556413 60556448 -91980811 + AT_rich Low_complexity Low_complexity 1 35 0 9 1047 270 414 18 6 chr5 60556449 60556612 -91980647 - RSINE1 SINE B4 0 165 1 9 1047 327 49 0 0 chr5 60557069 60557110 -91980149 + (TATG)n Simple_repeat Simple_repeat 2 42 0 9 1047 1785 230 18 18 chr5 60557142 60557536 -91979723 + ORR1B1 LTR MaLR 1 394 0 9 1047 262 396 33 20 chr5 60558120 60558272 -91978987 + ORR1E LTR MaLR 19 172 -187 9 1047 386 296 69 28 chr5 60558395 60558642 -91978617 + L1M2 LINE L1 3400 3656 -2487 1 1047 1855 169 3 6 chr5 60559009 60559337 -91977922 - Lx3A LINE L1 -2 6979 6653 1 1047 33 0 0 0 chr5 60559402 60559435 -91977824 + AT_rich Low_complexity Low_complexity 1 33 0 1 1047 266 330 22 33 chr5 60559779 60559907 -91977352 - B4A SINE B4 -64 228 108 1 1047 264 59 0 0 chr5 60559961 60559995 -91977264 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1047 381 103 0 0 chr5 60560069 60560137 -91977122 + (A)n Simple_repeat Simple_repeat 1 68 0 1 1047 992 53 8 0 chr5 60560403 60560534 -91976725 + (TTTCC)n Simple_repeat Simple_repeat 3 134 0 1 1047 287 224 0 23 chr5 60560543 60560630 -91976629 + CT-rich Low_complexity Low_complexity 1 85 0 1 1047 339 201 43 29 chr5 60560671 60560809 -91976450 + CT-rich Low_complexity Low_complexity 3 142 0 1 1047 3331 130 9 4 chr5 60560813 60561344 -91975915 - L1_Mus4 LINE L1 -1 6635 6102 1 1047 815 235 55 14 chr5 60561467 60561687 -91975572 - RLTR16 LTR ERVK -31 474 246 1 1047 542 342 0 7 chr5 60561678 60561831 -91975428 - B3 SINE B2 -54 162 11 1 1047 249 286 176 27 chr5 60562406 60562593 -91974666 + B3 SINE B2 1 215 -1 1 1047 805 314 11 0 chr5 60562598 60562786 -91974473 + B3 SINE B2 2 191 -25 1 1047 26 50 0 0 chr5 60562790 60562830 -91974429 + AT_rich Low_complexity Low_complexity 1 40 0 1 1047 25 31 0 0 chr5 60563383 60563415 -91973844 + AT_rich Low_complexity Low_complexity 1 32 0 1 1047 23 92 0 0 chr5 60563486 60563551 -91973708 + AT_rich Low_complexity Low_complexity 1 65 0 1 1047 366 23 0 0 chr5 60564560 60564603 -91972656 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1047 608 121 8 25 chr5 60564853 60564972 -91972287 - Lx3_Mus LINE L1 -942 6067 5951 1 1047 5292 136 46 11 chr5 60564972 60565865 -91971394 + Lx3A LINE L1 6045 6968 -13 1 1047 264 59 0 0 chr5 60565865 60565899 -91971360 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 1047 1133 255 124 34 chr5 60566074 60566460 -91970799 - MTC LTR MaLR 0 421 1 1 1047 239 336 27 36 chr5 60566529 60566640 -91970619 + RMER12 LTR ERVK 742 851 -471 1 1047 201 74 0 0 chr5 60566640 60566667 -91970592 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1047 866 351 34 30 chr5 60566683 60567158 -91970101 - Lx8 LINE L1 -167 7306 6830 1 1047 767 268 73 110 chr5 60568311 60568776 -91968483 + RLTR12B LTR ERVK 48 495 -33 1 1047 329 272 25 34 chr5 60569338 60569456 -91967803 - RLTR23 LTR ERV1 0 430 314 1 1047 356 221 8 96 chr5 60569857 60569982 -91967277 + RLTR11B LTR ERVK 127 240 -213 1 1047 257 309 37 93 chr5 60569990 60570236 -91967023 + RLTR12B LTR ERVK 241 472 -56 1 1047 439 303 77 64 chr5 60570429 60570633 -91966626 - MTE-int LTR MaLR -1178 402 170 1 1047 369 231 62 44 chr5 60570602 60570715 -91966544 - MTE2b LTR MaLR -262 117 3 1 1047 494 330 112 0 chr5 60571216 60571395 -91965864 + B3 SINE B2 11 209 -7 1 1047 25 51 0 0 chr5 60571879 60571918 -91965341 + AT_rich Low_complexity Low_complexity 1 39 0 1 1047 23 0 0 0 chr5 60572317 60572340 -91964919 + AT_rich Low_complexity Low_complexity 1 23 0 1 1047 224 286 0 0 chr5 60573151 60573228 -91964031 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1047 494 278 66 22 chr5 60573294 60573430 -91963829 - RSINE1 SINE B4 -6 159 18 1 1047 1735 83 12 0 chr5 60574885 60575125 -91962134 + L1_Mus1 LINE L1 6318 6560 -7 1 1047 507 343 20 47 chr5 60575830 60576130 -91961129 - Lx7 LINE L1 -417 7279 6988 1 1047 1403 285 104 64 chr5 60576611 60577427 -91959832 + Lx7 LINE L1 4830 5678 -202 1 1047 2130 325 88 20 chr5 60577467 60578709 -91958550 + Lx7 LINE L1 5784 7109 -587 1 1047 3063 37 0 0 chr5 60578732 60579086 -91958173 + IAPEY2_LTR LTR ERVK 1 354 -3 1 1047 822 135 49 37 chr5 60579086 60579248 -91958011 + IAPLTR4_I LTR ERVK 17 180 -1290 1 1047 9005 132 15 37 chr5 60579247 60580739 -91956520 + IAPEY3-int LTR ERVK 524 1982 -5698 1 1047 3356 80 9 0 chr5 60580716 60581153 -91956106 + IAPEY3-int LTR ERVK 2238 2678 -5002 1 1047 244 377 36 14 chr5 60581153 60581293 -91955966 + L3b LINE CR1 311 453 -29 1 1047 2829 122 19 32 chr5 60581293 60581947 -91955312 + IAPEY3-int LTR ERVK 6984 7581 0 1 1047 3023 48 0 0 chr5 60581947 60582304 -91954955 + IAPEY2_LTR LTR ERVK 1 357 0 1 1047 220 164 17 52 chr5 60582483 60582541 -91954718 + T-rich Low_complexity Low_complexity 5 60 0 1 1047 2879 91 5 2 chr5 60582708 60583103 -91954156 + MTA_Mm LTR MaLR 1 396 0 1 1047 293 291 10 0 chr5 60583890 60583993 -91953266 - Lx6 LINE L1 -16 7444 7341 1 1047 222 143 15 31 chr5 60583993 60584058 -91953201 + C-rich Low_complexity Low_complexity 4 67 0 1 1047 1675 284 146 14 chr5 60584066 60584368 -91952891 - Lx6 LINE L1 -573 6887 6532 1 1047 216 0 0 0 chr5 60584368 60584392 -91952867 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1047 1675 284 146 14 chr5 60584392 60584745 -91952514 - Lx6 LINE L1 -929 6531 6146 1 1047 245 331 60 26 chr5 60584943 60585210 -91952049 + L1M2 LINE L1 2821 3096 -3047 1 1047 305 228 195 12 chr5 60585210 60585379 -91951880 + L1M2 LINE L1 3202 3401 -2742 1 1047 423 0 0 0 chr5 60585387 60585434 -91951825 + (TA)n Simple_repeat Simple_repeat 1 47 0 1 1047 377 381 23 6 chr5 60585490 60585667 -91951592 + B4 SINE B4 26 205 -87 1 1047 387 0 0 0 chr5 60585671 60585714 -91951545 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1047 905 83 0 0 chr5 60585716 60585837 -91951422 - B1_Mus1 SINE Alu -12 136 16 1 1047 314 312 11 21 chr5 60585840 60585935 -91951324 + B4 SINE B4 199 292 0 1 1047 3863 137 35 47 chr5 60586149 60586887 -91950372 - Lx4B LINE L1 -670 5207 4479 1 1047 2134 200 19 2 chr5 60586880 60587312 -91949947 + Lx4B LINE L1 5205 5643 -234 1 1047 1418 175 55 0 chr5 60587316 60587590 -91949669 + Lx4B LINE L1 5864 6152 -906 1 1047 1494 275 41 11 chr5 60587594 60588161 -91949098 + Lx4B LINE L1 6361 7041 -17 1 1047 579 29 0 0 chr5 60588164 60588233 -91949026 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1047 468 0 0 0 chr5 60588234 60588286 -91948973 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 1 1047 3811 53 0 36 chr5 60588344 60588868 -91948391 - L1_Mm LINE L1 -2034 3849 3345 1 1047 6416 20 13 0 chr5 60588868 60589616 -91947643 + L1Md_F3 LINE L1 5812 6569 -15 1 1047 254 353 18 0 chr5 60589805 60589975 -91947284 + L1M2 LINE L1 3700 3872 -2268 1 1047 363 317 104 11 chr5 60590082 60590174 -91947085 + L1M2 LINE L1 4846 4938 -1205 1 1047 306 0 0 0 chr5 60590174 60590208 -91947051 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1047 363 317 104 11 chr5 60590208 60590297 -91946962 + L1M2 LINE L1 4939 5043 -1100 1 1047 1319 142 60 19 chr5 60590306 60590522 -91946737 + Lx LINE L1 6332 6556 -98 1 1047 713 74 0 53 chr5 60591296 60591410 -91945849 + L1_Mus2 LINE L1 6445 6552 -14 1 1047 576 0 0 0 chr5 60591490 60591554 -91945705 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 1 1047 213 39 0 0 chr5 60592110 60592136 -91945123 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 1 1047 423 270 127 42 chr5 60592912 60593148 -91944111 + Lx8 LINE L1 7215 7470 -3 1 1047 23 0 0 0 chr5 60593374 60593397 -91943862 + AT_rich Low_complexity Low_complexity 1 23 0 1 1047 243 0 0 0 chr5 60594049 60594076 -91943183 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1047 279 0 0 0 chr5 60594076 60594106 -91943153 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1047 21 0 0 0 chr5 60594489 60594510 -91942749 + AT_rich Low_complexity Low_complexity 1 21 0 1 1047 4160 55 24 2 chr5 60595163 60595695 -91941564 - L1Md_F2 LINE L1 -1 6581 6038 1 1047 780 311 54 54 chr5 60595857 60595908 -91941351 + Lx6 LINE L1 6048 6100 -950 1 1047 1014 150 37 5 chr5 60595908 60596096 -91941163 + L1_Mus3 LINE L1 6432 6625 -13 1 1047 1939 291 91 48 chr5 60596096 60596445 -91940814 + Lx6 LINE L1 6101 6684 -776 1 1047 1457 208 134 48 chr5 60596445 60596929 -91940330 + RLTR11A2 LTR ERVK 2 527 0 1 1047 1939 268 133 41 chr5 60596929 60597562 -91939697 + Lx6 LINE L1 6685 7389 -71 1 1047 37 62 0 0 chr5 60597696 60597761 -91939498 + AT_rich Low_complexity Low_complexity 1 65 0 1 1047 5399 88 32 4 chr5 60597762 60598522 -91938737 - Lx3_Mus LINE L1 -8 7001 6221 1 1047 4274 91 22 27 chr5 60598522 60599451 -91937808 + Lx3_Mus LINE L1 5301 6220 -789 1 1047 361 340 60 48 chr5 60600618 60601125 -91936134 + L1MC1 LINE L1 5719 6236 -108 1 1047 24 0 0 0 chr5 60601422 60601446 -91935813 + AT_rich Low_complexity Low_complexity 1 24 0 1 1047 22629 173 23 18 chr5 60601880 60607263 -91929996 - Lx LINE L1 -4 6650 1274 1 1047 3057 138 71 19 chr5 60607238 60607775 -91929484 - L1VL2 LINE L1 -5486 849 285 1 1047 31 58 0 0 chr5 60608289 60608341 -91928918 + AT_rich Low_complexity Low_complexity 1 52 0 1 1047 383 322 126 28 chr5 60609377 60609559 -91927700 - B3 SINE B2 -1 215 16 1 1047 227 326 11 23 chr5 60609850 60609938 -91927321 + Lx8 LINE L1 7181 7267 -206 1 1047 336 329 40 67 chr5 60610029 60610179 -91927080 + B1_Mur2 SINE Alu 3 148 -1 1 1047 292 275 38 0 chr5 60610401 60610481 -91926778 + Lx6 LINE L1 7065 7147 -313 1 1047 982 191 20 61 chr5 60610501 60610749 -91926510 - RMER17C LTR ERVK 0 410 166 1 1047 417 39 0 0 chr5 60610749 60610800 -91926459 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1047 982 212 82 52 chr5 60610800 60610913 -91926346 - RMER17C LTR ERVK -245 165 7 1 1047 274 259 205 0 chr5 60610913 60611025 -91926234 + Lx6 LINE L1 7150 7284 -176 1 1047 22 35 0 0 chr5 60611496 60611525 -91925734 + AT_rich Low_complexity Low_complexity 1 29 0 1 1047 23 33 0 0 chr5 60612020 60612050 -91925209 + AT_rich Low_complexity Low_complexity 1 30 0 1 1047 1002 97 0 27 chr5 60612223 60612235 -91925024 - B1_Mus1 SINE Alu -1 147 137 1 1047 245 0 86 0 chr5 60612235 60612270 -91924989 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1047 1002 97 0 27 chr5 60612270 60612406 -91924853 - B1_Mus1 SINE Alu -12 136 3 1 1047 1662 128 267 18 chr5 60613347 60613673 -91923586 - MTB_Mm LTR MaLR 0 407 1 1 1047 962 280 89 14 chr5 60613857 60614216 -91923043 - Lx9 LINE L1 -359 7285 6900 1 1047 25 31 0 0 chr5 60614219 60614251 -91923008 + AT_rich Low_complexity Low_complexity 1 32 0 1 1047 6994 102 23 3 chr5 60616140 60617143 -91920116 - RLTR13D5 LTR ERVK 0 1023 1 1 1047 195 129 0 0 chr5 60617203 60617234 -91920025 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1047 212 262 122 70 chr5 60617697 60617812 -91919447 - MIR SINE MIR -31 231 111 1 1047 544 288 77 58 chr5 60617904 60618217 -91919042 + RLTR15 LTR ERVK 9 327 -32 1 1047 368 329 13 39 chr5 60619162 60619317 -91917942 + MTE2a LTR MaLR 212 362 -17 1 1047 39 0 0 0 chr5 60619634 60619673 -91917586 + AT_rich Low_complexity Low_complexity 1 39 0 1 1047 483 18 0 0 chr5 60619860 60619916 -91917343 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1047 327 157 0 0 chr5 60621720 60621790 -91915469 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1047 513 0 0 0 chr5 60621790 60621847 -91915412 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1047 435 235 55 70 chr5 60622489 60622511 -91914748 + B4 SINE B4 73 92 -200 2 1047 765 115 0 0 chr5 60622511 60622624 -91914635 + B1_Mus1 SINE Alu 3 115 -33 2 1047 25 31 0 0 chr5 60623583 60623615 -91913644 + AT_rich Low_complexity Low_complexity 1 32 0 2 1047 405 0 0 0 chr5 60624096 60624141 -91913118 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1047 297 0 0 0 chr5 60624881 60624914 -91912345 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2 1047 948 53 98 0 chr5 60625366 60625498 -91911761 - B1_Mm SINE Alu -2 145 1 2 1047 791 268 49 57 chr5 60625545 60625682 -91911577 - RMER17B LTR ERVK -524 434 260 2 1047 252 111 0 0 chr5 60625682 60625727 -91911532 + (CAGAGA)n Simple_repeat Simple_repeat 3 47 0 2 1047 791 166 15 53 chr5 60625727 60625955 -91911304 - RMER17B LTR ERVK -559 399 1 2 1047 182 148 0 18 chr5 60626125 60626180 -91911079 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 2 1047 28 0 0 0 chr5 60626454 60626482 -91910777 + AT_rich Low_complexity Low_complexity 1 28 0 2 1047 278 231 100 55 chr5 60626496 60626606 -91910653 + L1MCa LINE L1 460 574 -5934 2 1047 208 53 0 50 chr5 60627014 60627054 -91910205 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2 1047 361 358 24 0 chr5 60627197 60627320 -91909939 + B4 SINE B4 80 205 -87 2 1047 2500 78 0 14 chr5 60627457 60627810 -91909449 + L1Md_F2 LINE L1 6223 6570 -12 2 1047 22 0 0 0 chr5 60628202 60628224 -91909035 + AT_rich Low_complexity Low_complexity 1 22 0 2 1047 22 35 0 0 chr5 60628499 60628528 -91908731 + AT_rich Low_complexity Low_complexity 1 29 0 2 1047 232 255 60 94 chr5 60631677 60631794 -91905465 - RLTR20D LTR ERVK -396 172 60 2 1047 875 19 74 6 chr5 60632154 60632317 -91904942 + (GAA)n Simple_repeat Simple_repeat 2 175 0 2 1047 720 143 6 29 chr5 60632317 60632347 -91904912 + polypurine Low_complexity Low_complexity 10 39 0 2 1047 1095 139 0 0 chr5 60632347 60632527 -91904732 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1047 720 143 6 29 chr5 60632527 60632661 -91904598 + GA-rich Low_complexity Low_complexity 40 171 0 2 1047 428 366 68 10 chr5 60633039 60633246 -91904013 + B4A SINE B4 68 286 -6 2 1047 792 359 83 64 chr5 60633522 60633676 -91903583 - Lx8 LINE L1 -12 7461 7296 2 1047 636 70 0 0 chr5 60633676 60633762 -91903497 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 1047 792 359 83 64 chr5 60633762 60634792 -91902467 - Lx8 LINE L1 -178 7295 6255 2 1047 437 346 47 11 chr5 60635542 60635732 -91901527 - Lx8 LINE L1 -263 7210 7014 2 1047 7101 153 45 21 chr5 60636809 60638163 -91899096 + Lx3C LINE L1 5464 6851 -125 2 1047 25 65 0 0 chr5 60639900 60639946 -91897313 + AT_rich Low_complexity Low_complexity 1 46 0 2 1047 180 77 0 0 chr5 60640335 60640361 -91896898 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2 1047 299 309 16 0 chr5 60640498 60640621 -91896638 - Lx6 LINE L1 -17 7443 7319 2 1047 332 220 43 140 chr5 60640665 60640829 -91896430 - Lx7 LINE L1 -125 7571 7424 2 1047 194 62 0 30 chr5 60640829 60640862 -91896397 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1047 234 229 0 0 chr5 60641005 60641075 -91896184 + GA-rich Low_complexity Low_complexity 3 72 0 2 1047 784 27 0 35 chr5 60641186 60641301 -91895958 - L1Md_F3 LINE L1 -14 6570 6460 2 1047 21 71 0 0 chr5 60641987 60642029 -91895230 + AT_rich Low_complexity Low_complexity 1 42 0 2 1047 247 363 30 53 chr5 60642824 60642955 -91894304 + ORR1D1 LTR MaLR 1 128 -246 2 1047 40 37 0 0 chr5 60643297 60643351 -91893908 + AT_rich Low_complexity Low_complexity 1 54 0 2 1047 288 0 0 0 chr5 60643410 60643442 -91893817 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1047 189 270 0 0 chr5 60643524 60643613 -91893646 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 2 1047 229 232 176 29 chr5 60643645 60643747 -91893512 - L1M1 LINE L1 -383 5917 5801 2 1047 12536 223 47 132 chr5 60644067 60645455 -91891804 + Lx3B LINE L1 701 2040 -3837 2 1047 255 31 0 0 chr5 60645455 60645487 -91891772 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1047 12536 200 54 172 chr5 60645487 60646918 -91890341 + Lx3B LINE L1 2041 2712 -3165 2 1047 1515 183 13 0 chr5 60646918 60647219 -91890040 + Lx2 LINE L1 6692 6996 -1 2 1047 12536 200 54 172 chr5 60647219 60649740 -91887519 + Lx3B LINE L1 2713 5450 -427 2 1047 1484 138 41 4 chr5 60649740 60649760 -91887499 + L1_Mus3 LINE L1 6356 6375 -263 2 1047 315 0 0 0 chr5 60649760 60649795 -91887464 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1047 1484 138 41 4 chr5 60649795 60650044 -91887215 + L1_Mus3 LINE L1 6376 6634 -4 2 1047 12536 200 54 172 chr5 60650044 60650186 -91887073 + Lx3B LINE L1 5451 5577 -300 2 1047 382 61 15 15 chr5 60650262 60650329 -91886930 + (CAAAAA)n Simple_repeat Simple_repeat 2 68 0 2 1047 21 36 0 0 chr5 60650755 60650783 -91886476 + AT_rich Low_complexity Low_complexity 1 28 0 2 1047 423 0 0 0 chr5 60651299 60651346 -91885913 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1047 253 288 67 73 chr5 60651603 60651768 -91885491 + RLTR25A LTR ERVK 937 1100 -3 2 1047 5028 214 114 19 chr5 60651781 60653046 -91884213 + Lx3B LINE L1 5587 6971 -2 2 1047 24 77 0 0 chr5 60653046 60653098 -91884161 + AT_rich Low_complexity Low_complexity 1 52 0 2 1047 379 336 8 15 chr5 60653805 60653935 -91883324 + MTD LTR MaLR 15 143 -276 2 1047 591 309 29 0 chr5 60653953 60654128 -91883131 + MTC-int LTR MaLR 321 500 -758 2 1047 823 228 30 0 chr5 60654129 60654296 -91882963 - ORR1C2 LTR MaLR -2 382 211 2 1047 214 103 0 49 chr5 60654957 60654998 -91882261 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1047 3760 150 122 35 chr5 60655139 60655969 -91881290 + RLTR13D6 LTR ERVK 1 902 0 2 1047 984 330 98 63 chr5 60656466 60657217 -91880042 + Lx8 LINE L1 6688 7465 -8 2 1047 739 72 18 0 chr5 60657330 60657441 -91879818 + (TG)n Simple_repeat Simple_repeat 1 113 0 2 1047 1047 78 0 0 chr5 60658898 60659040 -91878219 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 2 1047 1062 257 0 0 chr5 60659091 60659332 -91877927 + Lx4B LINE L1 6191 6431 -627 2 1047 1585 191 7 10 chr5 60659332 60659639 -91877620 + ORR1A1 LTR MaLR 21 326 -20 2 1047 1729 266 75 30 chr5 60659640 60660171 -91877088 + Lx2B LINE L1 6446 7000 0 2 1047 866 94 56 42 chr5 60660341 60660485 -91876774 + B1_Mus2 SINE Alu 2 147 0 2 1047 194 23 44 44 chr5 60660487 60660532 -91876727 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2 1047 384 22 0 0 chr5 60660645 60660690 -91876569 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2 1047 35 24 0 0 chr5 60660795 60660837 -91876422 + AT_rich Low_complexity Low_complexity 1 42 0 2 1047 239 176 0 34 chr5 60661003 60661091 -91876168 - Lx9 LINE L1 -127 7517 7433 2 1047 10056 132 22 67 chr5 60662661 60663684 -91873575 - Lx3_Mus LINE L1 -662 6347 5302 2 1047 3415 55 52 20 chr5 60663684 60664144 -91873115 - MT2C_Mm LTR ERVL 0 475 1 2 1047 10056 166 20 210 chr5 60664144 60664203 -91873056 - Lx3_Mus LINE L1 -576 5301 5242 2 1047 432 0 0 0 chr5 60664203 60664251 -91873008 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1047 10056 166 20 210 chr5 60664251 60664613 -91872646 - Lx3_Mus LINE L1 -636 5241 4959 2 1047 446 300 183 32 chr5 60664613 60665051 -91872208 - MLT1D LTR MaLR 0 505 2 2 1047 11216 123 24 74 chr5 60665051 60667094 -91870165 - Lx3_Mus LINE L1 -919 4958 3486 2 1047 243 0 0 0 chr5 60667094 60667121 -91870138 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 1047 9177 107 14 14 chr5 60667121 60667511 -91869748 - Lx3_Mus LINE L1 -2392 3494 3116 2 1047 465 34 0 0 chr5 60667551 60667610 -91869649 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2 1047 21 0 0 0 chr5 60667824 60667845 -91869414 + AT_rich Low_complexity Low_complexity 1 21 0 2 1047 421 17 0 33 chr5 60668608 60668668 -91868591 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 2 1047 1015 126 0 0 chr5 60668668 60668811 -91868448 - B1_Mm SINE Alu -3 144 2 2 1047 2997 125 6 20 chr5 60669350 60669848 -91867411 + L1_Mus3 LINE L1 6148 6638 0 2 1047 180 308 0 37 chr5 60670056 60670110 -91867149 + L2b LINE L2 3230 3281 -94 2 1047 21 36 0 0 chr5 60670448 60670476 -91866783 + AT_rich Low_complexity Low_complexity 1 28 0 2 1047 377 357 82 35 chr5 60671094 60671657 -91865602 - Lx8 LINE L1 -87 7386 6798 2 1047 447 267 99 21 chr5 60671735 60671940 -91865319 + L1_Rod LINE L1 5626 5915 -397 2 1047 207 0 0 0 chr5 60672147 60672170 -91865089 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1047 1862 335 51 24 chr5 60672187 60673121 -91864138 + Lx8 LINE L1 6370 7329 -144 2 1047 4640 121 14 11 chr5 60673560 60674279 -91862980 + Lx LINE L1 5921 6641 -13 2 1047 22 0 0 0 chr5 60674763 60674785 -91862474 + AT_rich Low_complexity Low_complexity 1 22 0 2 1047 600 200 0 0 chr5 60676154 60676334 -91860925 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2 1047 396 117 0 0 chr5 60676349 60676426 -91860833 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1047 21 0 0 0 chr5 60676518 60676539 -91860720 + AT_rich Low_complexity Low_complexity 1 21 0 2 1047 7336 160 30 48 chr5 60676769 60677473 -91859786 - Lx2A LINE L1 0 7008 6342 2 1047 423 56 0 0 chr5 60677473 60677527 -91859732 + (CAAG)n Simple_repeat Simple_repeat 2 55 0 2 1047 7336 160 30 48 chr5 60677527 60678269 -91858990 - Lx2A LINE L1 -667 6341 5587 2 1047 14787 187 25 44 chr5 60678286 60679054 -91858205 - Lx2A LINE L1 -1344 4542 3855 2 1047 1114 88 0 7 chr5 60679054 60679203 -91858056 - B1_Mus1 SINE Alu 0 148 1 2 1047 704 33 11 0 chr5 60679207 60679298 -91857961 + (TG)n Simple_repeat Simple_repeat 2 93 0 2 1047 14787 201 26 53 chr5 60679298 60682350 -91854909 - Lx2A LINE L1 -2032 3854 824 2 1047 5607 168 58 2 chr5 60682468 60684032 -91853227 + Lx LINE L1 5009 6636 -18 2 1047 582 329 98 0 chr5 60684634 60684889 -91852370 - Lx8 LINE L1 -297 7176 6897 2 1047 528 16 0 0 chr5 60684926 60684987 -91852272 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1047 21 0 0 0 chr5 60686173 60686194 -91851065 + AT_rich Low_complexity Low_complexity 1 21 0 2 1048 6805 122 8 21 chr5 60686749 60687858 -91849401 + L1_Mus3 LINE L1 5561 6638 0 2 1048 360 0 0 0 chr5 60688625 60688665 -91848594 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1048 464 218 0 8 chr5 60689677 60689811 -91847448 + CT-rich Low_complexity Low_complexity 4 136 0 2 1048 1985 79 29 0 chr5 60690068 60690346 -91846913 + L1_Mus1 LINE L1 6282 6567 0 2 1048 22 56 0 0 chr5 60690804 60690840 -91846419 + AT_rich Low_complexity Low_complexity 1 36 0 2 1048 34 84 0 0 chr5 60691374 60691457 -91845802 + AT_rich Low_complexity Low_complexity 1 83 0 2 1048 1064 82 0 13 chr5 60691758 60691907 -91845352 + B1_Mus2 SINE Alu 1 147 0 3 1048 431 289 28 70 chr5 60691937 60692217 -91845042 - Lx6 LINE L1 -1580 5880 5609 3 1048 2728 211 73 63 chr5 60692412 60693306 -91843953 + RMER3D-int LTR ERVK 1917 2819 -23 3 1048 417 20 0 0 chr5 60693306 60693356 -91843903 + (TTA)n Simple_repeat Simple_repeat 2 51 0 3 1048 2728 211 73 63 chr5 60693356 60693376 -91843883 + RMER3D-int LTR ERVK 2820 2839 -3 3 1048 1468 197 67 22 chr5 60693378 60693800 -91843459 + RLTR31A_Mm LTR ERVK 1 582 -2 3 1048 1322 249 26 11 chr5 60695554 60695903 -91841356 - RLTR15 LTR ERVK 0 359 6 3 1048 298 356 0 0 chr5 60695996 60696100 -91841159 - Lx8 LINE L1 -541 6932 6829 3 1048 228 243 0 0 chr5 60696228 60696302 -91840957 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1048 273 352 48 38 chr5 60696528 60696547 -91840712 + IAPEY_LTR LTR ERVK 51 67 -318 3 1048 255 31 0 0 chr5 60696547 60696579 -91840680 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 3 1048 2274 94 85 11 chr5 60696579 60696954 -91840305 + IAPLTR2a LTR ERVK 9 411 0 3 1048 255 31 0 0 chr5 60697146 60697178 -91840081 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 3 1048 366 305 63 46 chr5 60698003 60698178 -91839081 + RMER15 LTR ERVL 165 342 -233 3 1048 26 64 0 0 chr5 60699439 60699486 -91837773 + AT_rich Low_complexity Low_complexity 1 47 0 3 1048 241 125 36 0 chr5 60699622 60699678 -91837581 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1048 26 30 0 0 chr5 60700139 60700172 -91837087 + AT_rich Low_complexity Low_complexity 1 33 0 3 1048 4661 45 2 2 chr5 60700298 60700879 -91836380 + L1Md_T LINE L1 6002 6582 0 3 1048 332 22 22 0 chr5 60700932 60700977 -91836282 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 3 1048 233 316 38 12 chr5 60701048 60701128 -91836131 - RMER13B LTR ERVK -76 784 703 3 1048 670 243 39 62 chr5 60701182 60701441 -91835818 - RMER13B LTR ERVK -180 728 476 3 1048 270 81 0 0 chr5 60702034 60702071 -91835188 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1048 333 0 0 0 chr5 60702622 60702659 -91834600 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1048 315 338 60 16 chr5 60703064 60703326 -91833933 + Lx8 LINE L1 6700 6979 -494 3 1048 265 103 52 0 chr5 60703371 60703429 -91833830 + T-rich Low_complexity Low_complexity 2 62 0 3 1048 706 203 8 0 chr5 60704388 60704521 -91832738 + Lx2B LINE L1 6235 6368 -640 3 1048 1946 182 19 38 chr5 60704532 60704959 -91832300 + Lx2B LINE L1 6572 6990 -10 3 1048 306 0 0 0 chr5 60704959 60704993 -91832266 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 3 1048 22 56 0 0 chr5 60705154 60705190 -91832069 + AT_rich Low_complexity Low_complexity 1 36 0 3 1048 1167 81 0 0 chr5 60706789 60706949 -91830310 + (GAAA)n Simple_repeat Simple_repeat 1 160 0 3 1048 219 69 0 0 chr5 60707331 60707360 -91829899 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 1048 749 371 27 23 chr5 60707782 60708304 -91828955 - Lx8 LINE L1 -242 7231 6708 3 1048 396 325 355 3 chr5 60708373 60708745 -91828514 + Lx9 LINE L1 6226 6795 -849 3 1048 2075 102 9 13 chr5 60708906 60709224 -91828035 - L1_Mus4 LINE L1 0 6636 6320 3 1048 607 337 78 16 chr5 60712038 60712123 -91825136 + L1M2 LINE L1 3565 3666 -2214 3 1048 492 18 0 0 chr5 60712123 60712180 -91825079 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 1048 411 21 0 0 chr5 60712180 60712227 -91825032 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1048 634 305 49 20 chr5 60712227 60712597 -91824662 + L1M2 LINE L1 3667 4075 -2068 3 1048 449 307 135 29 chr5 60712770 60713317 -91823942 + L1M2 LINE L1 4707 5311 -832 3 1048 24 32 0 0 chr5 60713365 60713396 -91823863 + AT_rich Low_complexity Low_complexity 1 31 0 3 1048 23 0 0 0 chr5 60714646 60714669 -91822590 + AT_rich Low_complexity Low_complexity 1 23 0 3 1048 266 26 53 0 chr5 60714920 60714958 -91822301 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1048 554 330 43 39 chr5 60714958 60715182 -91822077 - MTE2b LTR MaLR -14 365 139 3 1048 2329 241 60 97 chr5 60715182 60716127 -91821132 + RMER17B LTR ERVK 6 915 -43 3 1048 471 321 22 15 chr5 60716132 60716268 -91820991 - MTE2b LTR MaLR -225 154 18 3 1048 279 203 0 0 chr5 60716358 60716422 -91820837 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1048 212 375 16 0 chr5 60716629 60716693 -91820566 + RSINE1 SINE B4 12 76 -89 3 1048 3032 70 13 0 chr5 60716884 60717349 -91819910 + L1_Mus1 LINE L1 6159 6567 0 3 1048 2476 150 14 14 chr5 60719818 60720258 -91817001 - Lx2 LINE L1 -8 6989 6550 3 1048 2064 126 7 3 chr5 60722547 60722857 -91814402 + RLTR10E LTR ERVK 1 311 0 3 1048 1519 183 40 3 chr5 60722960 60723256 -91814003 + ORR1A2 LTR MaLR 1 307 -20 3 1048 1305 112 15 0 chr5 60723256 60723452 -91813807 - L1_Mm LINE L1 -732 5151 4953 3 1048 2729 105 5 8 chr5 60723453 60723855 -91813404 + L1_Mm LINE L1 4534 4934 -949 3 1048 2729 73 0 19 chr5 60723856 60724184 -91813075 + L1_Mus1 LINE L1 6200 6527 -40 3 1048 2356 114 155 2 chr5 60724184 60724596 -91812663 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1048 2729 73 0 19 chr5 60724596 60724642 -91812617 + L1_Mus1 LINE L1 6528 6567 0 3 1048 333 65 22 0 chr5 60724652 60724698 -91812561 + ORR1A2 LTR MaLR 272 318 -8 3 1048 363 167 0 0 chr5 60725273 60725339 -91811920 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1048 32 57 0 0 chr5 60725512 60725565 -91811694 + AT_rich Low_complexity Low_complexity 1 53 0 3 1048 731 265 128 79 chr5 60725620 60726108 -91811151 - MT2B LTR ERVL -51 550 1 3 1048 255 324 107 23 chr5 60728716 60728893 -91808366 + Lx8 LINE L1 7273 7464 -9 3 1048 23 33 0 0 chr5 60728966 60728996 -91808263 + AT_rich Low_complexity Low_complexity 1 30 0 3 1048 268 278 33 22 chr5 60730001 60730093 -91807166 - B3A SINE B2 -102 96 4 3 1048 602 311 14 0 chr5 60730861 60731009 -91806250 + B3A SINE B2 8 157 -41 3 1048 351 0 0 0 chr5 60731017 60731056 -91806203 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1048 22 35 0 0 chr5 60731585 60731614 -91805645 + AT_rich Low_complexity Low_complexity 1 29 0 3 1048 2820 135 9 17 chr5 60731788 60732248 -91805011 - Lx3B LINE L1 -462 6511 6056 3 1048 3379 196 41 11 chr5 60732672 60733396 -91803863 - Lx2B LINE L1 -2 6998 6253 3 1048 3235 132 14 0 chr5 60733401 60733895 -91803364 + Lx2 LINE L1 5587 6087 -910 3 1048 587 49 0 47 chr5 60735893 60735978 -91801281 - B1_Mur4 SINE Alu 0 150 70 3 1048 795 311 4 4 chr5 60736091 60736359 -91800900 + L1_Mur3 LINE L1 354 621 -7107 3 1048 2141 199 44 80 chr5 60736356 60737010 -91800249 + L1_Mur3 LINE L1 2423 3053 -2827 3 1048 291 258 0 0 chr5 60737011 60737077 -91800182 - URR1B DNA MER1_type -2 223 158 3 1048 314 227 59 40 chr5 60737083 60737184 -91800075 - RMER2 LTR ERV1 -5 562 460 3 1048 35307 46 1 3 chr5 60737216 60742537 -91794722 + L1Md_T LINE L1 187 5589 -297 3 1048 8260 37 0 0 chr5 60742537 60743533 -91793726 + L1Md_T LINE L1 5590 6585 0 3 1048 574 257 62 67 chr5 60743611 60743932 -91793327 - RMER2 LTR ERV1 -212 355 1 3 1048 775 250 11 11 chr5 60743932 60744091 -91793168 - URR1B DNA MER1_type -65 160 2 3 1048 907 157 49 0 chr5 60744095 60744299 -91792960 + L1_Mur3 LINE L1 3046 3259 -2621 3 1048 3066 208 10 2 chr5 60744548 60745160 -91792099 - L1_Mur1 LINE L1 -198 5688 5072 3 1048 1724 188 26 6 chr5 60745160 60745507 -91791752 + Lx2B LINE L1 6645 6998 -2 3 1048 771 125 0 127 chr5 60746191 60746356 -91790903 + L1_Mus1 LINE L1 6421 6564 -3 3 1048 676 306 98 13 chr5 60746911 60747308 -91789951 - L1_Rod LINE L1 0 5847 5458 3 1048 627 376 103 22 chr5 60747439 60748175 -91789084 + Lx8 LINE L1 6465 7260 -213 3 1048 264 59 0 0 chr5 60748361 60748395 -91788864 + (CAA)n Simple_repeat Simple_repeat 2 35 0 3 1048 2106 133 45 13 chr5 60748585 60748967 -91788292 - Lx2 LINE L1 0 6997 6604 3 1048 522 103 0 0 chr5 60749017 60749095 -91788164 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 1048 194 116 0 23 chr5 60749145 60749189 -91788070 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1048 22 0 0 0 chr5 60749457 60749479 -91787780 + AT_rich Low_complexity Low_complexity 1 22 0 3 1048 21790 127 15 50 chr5 60749513 60751427 -91785832 - L1_Mus3 LINE L1 0 6638 4959 3 1048 1229 85 0 6 chr5 60751427 60751604 -91785655 + (TTC)n Simple_repeat Simple_repeat 1 176 0 3 1048 21790 158 25 106 chr5 60751604 60753518 -91783741 - L1_Mus3 LINE L1 -925 4958 3265 3 1048 1588 126 4 4 chr5 60753518 60753773 -91783486 - L1_Mus2 LINE L1 0 6566 6312 3 1048 21790 159 21 82 chr5 60753773 60756288 -91780971 - L1_Mus3 LINE L1 -2619 3264 503 3 1048 362 344 23 23 chr5 60756294 60756553 -91780706 + L1MC1 LINE L1 6047 6305 -28 3 1048 735 95 0 0 chr5 60756971 60757076 -91780183 + (TTTC)n Simple_repeat Simple_repeat 2 106 0 3 1048 567 363 31 0 chr5 60757080 60757273 -91779986 - B3 SINE B2 -17 199 1 3 1048 23 78 0 0 chr5 60757463 60757514 -91779745 + AT_rich Low_complexity Low_complexity 1 51 0 3 1048 387 0 0 0 chr5 60757758 60757801 -91779458 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1048 231 299 44 15 chr5 60758330 60758466 -91778793 + L1M5 LINE L1 4546 4685 -1461 3 1048 240 211 0 37 chr5 60759108 60759162 -91778097 - MTD LTR MaLR -367 52 1 3 1048 220 405 0 48 chr5 60759903 60759986 -91777273 - ID_B1 SINE B4 -66 158 80 3 1048 557 325 68 87 chr5 60760994 60761419 -91775840 - RMER10A LTR ERVL -25 417 1 3 1048 35 0 0 0 chr5 60761681 60761716 -91775543 + AT_rich Low_complexity Low_complexity 1 35 0 3 1048 713 283 175 36 chr5 60761746 60762134 -91775125 - RMER10A LTR ERVL 0 442 1 3 1048 246 163 41 0 chr5 60763027 60763076 -91774183 + ORR1D2 LTR MaLR 318 368 -2 3 1048 240 240 10 39 chr5 60763241 60763345 -91773914 + Lx9 LINE L1 7491 7591 -53 3 1048 244 73 0 0 chr5 60763448 60763489 -91773770 + L1Md_T LINE L1 6542 6582 0 3 1048 26 0 0 0 chr5 60763492 60763518 -91773741 + AT_rich Low_complexity Low_complexity 1 26 0 3 1048 21 57 0 0 chr5 60764086 60764121 -91773138 + AT_rich Low_complexity Low_complexity 1 35 0 3 1048 22 35 0 0 chr5 60765485 60765514 -91771745 + AT_rich Low_complexity Low_complexity 1 29 0 3 1048 597 177 0 0 chr5 60766327 60766440 -91770819 + (TA)n Simple_repeat Simple_repeat 1 113 0 3 1048 1351 99 5 0 chr5 60766777 60766979 -91770280 + L1Md_F2 LINE L1 6370 6572 -10 3 1048 1571 16 22 0 chr5 60767494 60767676 -91769583 + B2_Mm1a SINE B2 1 186 -7 3 1048 210 91 0 0 chr5 60767815 60767848 -91769411 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 1048 997 202 43 30 chr5 60769065 60769295 -91767964 + RLTR20B2 LTR ERVK 328 560 0 3 1048 1268 186 62 65 chr5 60770014 60770336 -91766923 + ORR1A4 LTR MaLR 1 321 -8 3 1048 207 0 0 0 chr5 60770358 60770381 -91766878 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1048 3125 133 123 0 chr5 60770504 60771024 -91766235 - MT2B2 LTR ERVL 0 584 1 4 1048 25 41 0 20 chr5 60771747 60771761 -91765498 + AT_rich Low_complexity Low_complexity 1 14 0 4 1048 923 133 6 0 chr5 60771761 60771934 -91765325 - Lx3_Mus LINE L1 0 7009 6836 4 1048 25 41 0 20 chr5 60771934 60771969 -91765290 + AT_rich Low_complexity Low_complexity 1 35 0 4 1048 676 266 62 144 chr5 60772968 60773337 -91763922 - RMER20B LTR ERVK -55 572 234 4 1048 2057 195 28 7 chr5 60774060 60774484 -91762775 + Lx3C LINE L1 6533 6965 -11 4 1048 26 64 0 0 chr5 60774484 60774531 -91762728 + AT_rich Low_complexity Low_complexity 1 47 0 4 1048 328 294 247 0 chr5 60774632 60774778 -91762481 - B3A SINE B2 -16 182 1 4 1048 293 331 71 88 chr5 60774802 60774984 -91762275 - B3A SINE B2 -11 187 9 4 1048 984 254 35 152 chr5 60775289 60775516 -91761743 - ORR1C1 LTR MaLR 0 378 202 4 1048 1049 90 7 0 chr5 60775516 60775661 -91761598 - B1_Mus1 SINE Alu 0 148 3 4 1048 984 254 35 152 chr5 60775661 60775861 -91761398 - ORR1C1 LTR MaLR -177 201 1 4 1048 21 36 0 0 chr5 60776085 60776113 -91761146 + AT_rich Low_complexity Low_complexity 1 28 0 4 1048 1822 257 179 9 chr5 60776990 60777525 -91759734 - Lx6 LINE L1 0 7460 6835 4 1048 1786 261 43 21 chr5 60777522 60778098 -91759161 - Lx6 LINE L1 -1125 6335 5747 4 1048 1112 82 0 7 chr5 60778116 60778263 -91758996 + B1_Mm SINE Alu 2 147 0 4 1048 1612 198 93 30 chr5 60778293 60778725 -91758534 - Lx6 LINE L1 -553 5327 4869 4 1048 330 26 0 0 chr5 60778808 60778847 -91758412 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1048 366 297 44 26 chr5 60778858 60778972 -91758287 - B1_Mur1 SINE Alu -9 140 25 4 1048 650 295 45 23 chr5 60780213 60780544 -91756715 - L1MA4 LINE L1 -307 5993 5655 4 1048 225 0 0 0 chr5 60780932 60780957 -91756302 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1048 861 264 60 9 chr5 60781034 60781367 -91755892 - L1MA4 LINE L1 -1018 5125 4776 4 1048 1786 120 16 50 chr5 60782404 60782721 -91754538 - Lx2 LINE L1 -304 6693 6388 4 1048 1126 159 84 24 chr5 60782721 60782972 -91754287 + Lx2 LINE L1 6718 6983 -14 4 1048 289 330 96 0 chr5 60783113 60783207 -91754052 - LFSINE_Vert SINE SINE -303 156 54 4 1048 21 71 0 0 chr5 60783379 60783421 -91753838 + AT_rich Low_complexity Low_complexity 1 42 0 4 1048 273 302 62 110 chr5 60783594 60783821 -91753438 - B3A SINE B2 0 216 1 4 1048 261 209 0 29 chr5 60784163 60784232 -91753027 + (TCTCTG)n Simple_repeat Simple_repeat 4 70 0 4 1048 236 186 0 17 chr5 60784408 60784468 -91752791 + (TATG)n Simple_repeat Simple_repeat 3 61 0 4 1048 1539 286 5 0 chr5 60784468 60784888 -91752371 - Lx9 LINE L1 -327 7317 6896 4 1048 22 0 0 0 chr5 60785539 60785561 -91751698 + AT_rich Low_complexity Low_complexity 1 22 0 4 1048 259 337 47 0 chr5 60785851 60785937 -91751322 + RSINE1 SINE B4 58 147 -18 4 1048 39 74 0 0 chr5 60785990 60786071 -91751188 + AT_rich Low_complexity Low_complexity 1 81 0 4 1048 24 32 0 0 chr5 60786140 60786171 -91751088 + AT_rich Low_complexity Low_complexity 1 31 0 4 1048 210 143 0 0 chr5 60786280 60786315 -91750944 + (TATG)n Simple_repeat Simple_repeat 2 36 0 4 1048 615 347 36 27 chr5 60786377 60786596 -91750663 - B4A SINE B4 -71 221 1 4 1048 237 65 0 0 chr5 60787147 60787178 -91750081 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1048 729 322 101 8 chr5 60787855 60788212 -91749047 + MLT1B LTR MaLR 1 390 0 4 1048 1391 217 139 12 chr5 60789034 60789379 -91747880 + ORR1B1 LTR MaLR 1 389 -5 4 1048 797 308 56 20 chr5 60789381 60789723 -91747536 - Lx7 LINE L1 -539 7157 6804 4 1048 428 310 53 58 chr5 60789733 60790144 -91747115 - Lx7 LINE L1 -6418 1310 902 4 1048 3298 81 4 15 chr5 60790895 60791357 -91745902 - L1_Mus2 LINE L1 -1 6565 6109 4 1048 496 318 31 29 chr5 60791802 60792096 -91745163 - ORR1E LTR MaLR 0 379 10 4 1048 252 220 17 17 chr5 60792172 60792232 -91745027 + MTEb LTR MaLR 320 379 0 4 1048 23 68 0 0 chr5 60793006 60793050 -91744209 + AT_rich Low_complexity Low_complexity 1 44 0 4 1048 28 29 0 0 chr5 60793101 60793136 -91744123 + AT_rich Low_complexity Low_complexity 1 35 0 4 1048 270 0 0 0 chr5 60793367 60793397 -91743862 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1048 243 0 0 0 chr5 60793397 60793423 -91743836 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1048 198 270 0 0 chr5 60793722 60793785 -91743474 + A-rich Low_complexity Low_complexity 1 63 0 4 1048 462 79 0 0 chr5 60793785 60793848 -91743411 + (GGGA)n Simple_repeat Simple_repeat 3 65 0 4 1048 225 0 0 0 chr5 60794081 60794106 -91743153 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1048 291 355 82 73 chr5 60794564 60794783 -91742476 + MLT1E1A LTR MaLR 396 616 -64 4 1048 1972 38 0 0 chr5 60796866 60797102 -91740157 - L1Md_T LINE L1 0 6582 6347 4 1048 321 283 101 69 chr5 60798110 60798357 -91738902 - L1MC3 LINE L1 -722 7063 6809 4 1048 1074 107 6 25 chr5 60798421 60798584 -91738675 - L1_Mur1 LINE L1 -150 5736 5577 4 1048 5562 154 15 7 chr5 60798586 60799567 -91737692 + Lx3A LINE L1 5984 6972 -9 4 1048 309 162 0 0 chr5 60799576 60799644 -91737615 + A-rich Low_complexity Low_complexity 1 68 0 4 1048 1370 243 140 56 chr5 60800041 60800801 -91736458 - RMER6C LTR ERVK -3 717 27 4 1048 5881 68 5 0 chr5 60800801 60801581 -91735678 + L1_Mus2 LINE L1 3736 4519 -1364 4 1048 3827 102 1 0 chr5 60801582 60802184 -91735075 + L1_Mus2 LINE L1 5339 5941 -625 4 1048 1931 126 42 10 chr5 60802184 60802497 -91734762 + L1_Mus2 LINE L1 6244 6566 -1 4 1048 2069 194 0 18 chr5 60802497 60802540 -91734719 + Lx2A LINE L1 5941 5978 -1030 4 1048 1739 69 4 0 chr5 60802640 60802871 -91734388 - L1Md_F2 LINE L1 -1 6581 6350 4 1048 18690 82 7 1 chr5 60802873 60805774 -91731485 - L1Md_F2 LINE L1 -385 6197 3280 4 1048 1031 95 0 34 chr5 60805860 60806035 -91731224 + Lx LINE L1 6478 6646 -8 4 1048 7814 109 36 32 chr5 60806433 60808573 -91728686 - Lx3_Mus LINE L1 0 7009 4870 4 1048 964 169 17 11 chr5 60808616 60808790 -91728469 + RMER17D2 LTR ERVK 635 809 0 4 1048 558 67 0 0 chr5 60809055 60809130 -91728129 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1048 21 0 0 0 chr5 60810537 60810558 -91726701 + AT_rich Low_complexity Low_complexity 1 21 0 4 1048 1298 153 40 43 chr5 60811058 60811358 -91725901 + Lx LINE L1 6356 6654 0 4 1048 3618 79 2 0 chr5 60812142 60812621 -91724638 + L1Md_F2 LINE L1 6092 6571 -11 4 1048 229 26 53 0 chr5 60812689 60812727 -91724532 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 4 1048 35 24 0 0 chr5 60812756 60812798 -91724461 + AT_rich Low_complexity Low_complexity 1 42 0 4 1048 1156 55 0 0 chr5 60813001 60813147 -91724112 + B1_Mus2 SINE Alu 1 146 -1 4 1048 222 37 0 0 chr5 60813147 60813174 -91724085 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 4 1048 407 269 50 42 chr5 60813213 60813333 -91723926 - B1_Mur3 SINE Alu -23 126 6 4 1048 463 304 0 68 chr5 60813335 60813483 -91723776 + B1_Mur1 SINE Alu 10 147 -2 4 1048 3860 165 23 24 chr5 60814187 60814931 -91722328 + RMER6A LTR ERVK 14 756 0 4 1048 219 36 0 0 chr5 60815349 60815377 -91721882 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4 1048 366 107 0 0 chr5 60815513 60815569 -91721690 + (GGA)n Simple_repeat Simple_repeat 3 58 0 4 1048 291 28 0 0 chr5 60815567 60815603 -91721656 + (CAG)n Simple_repeat Simple_repeat 2 37 0 4 1048 1331 206 151 21 chr5 60815603 60815935 -91721324 - MTC LTR MaLR -46 375 1 4 1048 465 149 0 0 chr5 60816007 60816121 -91721138 + (CA)n Simple_repeat Simple_repeat 2 115 0 4 1048 1010 275 70 28 chr5 60816230 60816343 -91720916 - ORR1D1 LTR MaLR 0 374 253 4 1048 180 0 0 0 chr5 60816343 60816363 -91720896 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1048 1010 275 70 28 chr5 60816363 60816442 -91720817 - ORR1D1 LTR MaLR -122 252 166 4 1048 294 29 0 0 chr5 60816442 60816477 -91720782 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1048 405 0 0 0 chr5 60816477 60816521 -91720738 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 1048 1010 275 70 28 chr5 60816521 60816685 -91720574 - ORR1D1 LTR MaLR -209 165 3 4 1048 430 323 27 47 chr5 60817088 60817355 -91719904 + RMER20B LTR ERVK 168 418 -209 4 1049 351 0 0 0 chr5 60818444 60818483 -91718776 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1049 414 0 0 0 chr5 60818483 60818528 -91718731 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1049 2526 212 68 9 chr5 60818636 60819179 -91718080 + RLTR20B3 LTR ERVK 1 575 -2 4 1049 507 95 0 0 chr5 60819273 60819347 -91717912 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 1049 21 36 0 0 chr5 60819420 60819448 -91717811 + AT_rich Low_complexity Low_complexity 1 28 0 4 1049 333 315 41 20 chr5 60819488 60819634 -91717625 - B1F2 SINE Alu 0 149 1 4 1049 1079 80 0 0 chr5 60819764 60819901 -91717358 + B1_Mus2 SINE Alu 1 137 -10 4 1049 584 310 39 0 chr5 60820106 60820309 -91716950 - B3 SINE B2 -5 211 1 4 1049 2011 180 98 7 chr5 60820531 60820939 -91716320 - Lx LINE L1 0 6654 6210 4 1049 209 83 28 0 chr5 60822445 60822481 -91714778 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 4 1049 31 26 0 0 chr5 60822673 60822711 -91714548 + AT_rich Low_complexity Low_complexity 1 38 0 4 1049 584 359 95 28 chr5 60823569 60824311 -91712948 + Lx8 LINE L1 6648 7445 -28 4 1049 405 319 34 60 chr5 60825129 60825352 -91711907 + B3A SINE B2 2 216 0 4 1049 407 232 89 0 chr5 60825943 60826055 -91711204 - B1_Mur4 SINE Alu 0 150 29 4 1049 3589 139 57 8 chr5 60826266 60826882 -91710377 + Lx3A LINE L1 6328 6973 -8 4 1049 732 123 0 0 chr5 60827294 60827408 -91709851 + (TA)n Simple_repeat Simple_repeat 1 114 0 4 1049 1935 150 28 3 chr5 60827534 60827888 -91709371 + Lx2 LINE L1 6635 6997 0 4 1049 23 68 0 0 chr5 60827890 60827934 -91709325 + AT_rich Low_complexity Low_complexity 1 44 0 4 1049 25 31 0 0 chr5 60828575 60828607 -91708652 + AT_rich Low_complexity Low_complexity 1 32 0 4 1049 307 315 123 117 chr5 60828936 60829098 -91708161 + RSINE1 SINE B4 3 165 0 4 1049 24 53 0 0 chr5 60830021 60830059 -91707200 + AT_rich Low_complexity Low_complexity 1 38 0 4 1049 5623 41 2 1 chr5 60830144 60831164 -91706095 + L1Md_F2 LINE L1 5240 6259 -323 5 1049 180 0 0 0 chr5 60831506 60831526 -91705733 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1049 637 336 12 28 chr5 60831532 60831780 -91705479 - Lx8 LINE L1 -153 7320 7077 5 1049 273 58 38 19 chr5 60832453 60832506 -91704753 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 5 1049 31 0 0 0 chr5 60832699 60832730 -91704529 + AT_rich Low_complexity Low_complexity 1 31 0 5 1049 1357 213 10 7 chr5 60832758 60833056 -91704203 + Lx2B LINE L1 6184 6482 -518 5 1049 1131 171 9 5 chr5 60833078 60833296 -91703963 + L1_Mur2 LINE L1 4974 5192 -685 5 1049 424 333 118 75 chr5 60833534 60833813 -91703446 - B4A SINE B4 -1 291 1 5 1049 689 336 70 37 chr5 60834246 60834731 -91702528 + RMER5 LTR ERV1 22 522 -12 5 1049 548 40 0 13 chr5 60834760 60834836 -91702423 + (TG)n Simple_repeat Simple_repeat 2 76 0 5 1049 261 119 0 0 chr5 60835156 60835198 -91702061 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1049 2543 153 41 24 chr5 60835569 60836032 -91701227 - Lx2 LINE L1 -19 6978 6508 5 1049 831 352 6 20 chr5 60836845 60837190 -91700069 - Lx9 LINE L1 -753 6891 6552 5 1049 791 296 104 73 chr5 60837196 60837659 -91699600 + Lx9 LINE L1 6956 7432 -212 5 1049 216 97 0 0 chr5 60837659 60837690 -91699569 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1049 23 0 0 0 chr5 60837738 60837761 -91699498 + AT_rich Low_complexity Low_complexity 1 23 0 5 1049 3424 167 68 11 chr5 60838480 60839116 -91698143 - Lx2B LINE L1 -7 6993 6322 5 1049 517 341 81 42 chr5 60839116 60839266 -91697993 + Lx7 LINE L1 6893 7037 -659 5 1049 938 141 0 14 chr5 60839266 60839403 -91697856 + B1_Mus2 SINE Alu 1 137 -10 5 1049 391 18 18 18 chr5 60839403 60839460 -91697799 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 5 1049 517 341 81 42 chr5 60839466 60839698 -91697561 + Lx7 LINE L1 7038 7290 -406 5 1049 202 211 0 0 chr5 60839733 60839771 -91697488 + T-rich Low_complexity Low_complexity 4 41 0 5 1049 23 33 0 0 chr5 60839889 60839919 -91697340 + AT_rich Low_complexity Low_complexity 1 30 0 5 1049 1041 99 0 0 chr5 60841015 60841167 -91696092 + (GA)n Simple_repeat Simple_repeat 2 153 0 5 1049 259 268 23 11 chr5 60841417 60841504 -91695755 - Lx9 LINE L1 -176 7468 7381 5 1049 307 336 25 77 chr5 60841556 60841609 -91695650 + Lx9 LINE L1 6916 6968 -676 5 1049 3032 71 5 5 chr5 60841609 60842005 -91695254 - MTA_Mm LTR MaLR 0 396 1 5 1049 307 336 25 77 chr5 60842005 60842186 -91695073 + Lx9 LINE L1 6969 7138 -506 5 1049 1222 302 93 36 chr5 60842434 60842897 -91694362 - RLTR40 LTR ERVK -4 813 301 5 1049 576 111 17 8 chr5 60842897 60843015 -91694244 + (TA)n Simple_repeat Simple_repeat 1 119 0 5 1049 1222 274 93 28 chr5 60843015 60843218 -91694041 - RLTR40 LTR ERVK -517 300 74 5 1049 375 373 22 11 chr5 60843602 60843765 -91693494 + B4 SINE B4 108 272 -20 5 1049 621 90 0 0 chr5 60843765 60843854 -91693405 + (TG)n Simple_repeat Simple_repeat 2 90 0 5 1049 375 378 18 54 chr5 60843854 60843889 -91693370 + B4 SINE B4 266 292 0 5 1049 306 185 30 15 chr5 60845555 60845621 -91691638 + B2_Mm2 SINE B2 1 67 -128 5 1049 396 325 63 29 chr5 60845620 60845794 -91691465 - B3 SINE B2 -36 180 1 5 1049 865 325 123 6 chr5 60846301 60846815 -91690444 - Lx8 LINE L1 -9 7464 6891 5 1049 430 117 320 52 chr5 60847891 60848044 -91689215 - Lx3_Mus LINE L1 0 7009 6816 5 1049 410 200 28 65 chr5 60848379 60848486 -91688773 + RMER6C LTR ERVK 1 103 -617 5 1049 1725 217 54 6 chr5 60848507 60848929 -91688330 - Lx2B LINE L1 -107 6893 6178 5 1049 210 37 0 0 chr5 60848948 60848975 -91688284 + (CTG)n Simple_repeat Simple_repeat 2 28 0 5 1049 1287 84 0 0 chr5 60848975 60849152 -91688107 + (TTC)n Simple_repeat Simple_repeat 3 180 0 5 1049 3707 114 9 9 chr5 60849160 60849734 -91687525 - L1_Mus3 LINE L1 -19 6619 6046 5 1049 1810 183 101 50 chr5 60849735 60849839 -91687420 + RMER6C LTR ERVK 202 308 -382 5 1049 1035 77 0 0 chr5 60849839 60849969 -91687290 + B1_Mus1 SINE Alu 1 130 -18 5 1049 1810 183 101 50 chr5 60849969 60850329 -91686930 + RMER6C LTR ERVK 309 690 0 5 1049 23 33 0 0 chr5 60850698 60850728 -91686531 + AT_rich Low_complexity Low_complexity 1 30 0 5 1049 517 239 58 36 chr5 60850734 60850873 -91686386 + B1_Mur2 SINE Alu 7 148 -1 5 1049 22 56 0 0 chr5 60850889 60850925 -91686334 + AT_rich Low_complexity Low_complexity 1 36 0 5 1049 785 275 98 5 chr5 60850925 60851195 -91686064 - MT2A LTR ERVL 0 601 209 5 1049 1012 115 161 0 chr5 60851820 60852012 -91685247 + Lx2B LINE L1 6777 6999 -1 5 1049 405 0 0 0 chr5 60852027 60852072 -91685187 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1049 818 329 56 7 chr5 60852077 60852365 -91684894 - ORR1D2 LTR MaLR -61 309 8 5 1049 457 267 34 64 chr5 60852369 60852573 -91684686 - Lx7 LINE L1 -1834 5862 5665 5 1049 276 240 31 20 chr5 60852575 60852673 -91684586 + L1VL1 LINE L1 1 99 -6323 5 1049 567 218 412 0 chr5 60852672 60852883 -91684376 + L1Md_Gf LINE L1 335 632 -5987 5 1049 247 150 0 0 chr5 60852884 60852924 -91684335 + L1Md_Gf LINE L1 593 632 -5987 5 1049 33134 65 3 4 chr5 60852924 60857628 -91679631 + L1Md_Gf LINE L1 794 5589 -297 5 1049 7786 62 1 5 chr5 60857628 60858624 -91678635 + L1Md_F2 LINE L1 5588 6579 -3 5 1049 33134 62 3 4 chr5 60858624 60858637 -91678622 + L1Md_Gf LINE L1 5590 5605 -281 5 1049 3907 180 127 14 chr5 60858665 60859526 -91677733 - RMER17B LTR ERVK 0 958 1 5 1049 312 317 37 0 chr5 60859532 60859614 -91677645 - B1F1 SINE Alu -52 97 13 5 1049 1081 126 0 22 chr5 60859803 60859982 -91677277 - B2_Mm2 SINE B2 -20 175 1 5 1049 22 0 0 0 chr5 60860612 60860634 -91676625 + AT_rich Low_complexity Low_complexity 1 22 0 5 1049 1060 97 7 0 chr5 60861027 60861172 -91676087 + B1_Mm SINE Alu 1 146 -1 5 1049 1499 105 65 23 chr5 60861440 60861737 -91675522 - RLTR13C2 LTR ERVK 0 1023 506 5 1049 19447 22 1 0 chr5 60861737 60864023 -91673236 + L1Md_T LINE L1 3299 5586 -297 5 1049 8925 8 0 0 chr5 60864023 60865019 -91672240 + L1Md_T LINE L1 5587 6582 0 5 1049 3450 107 34 2 chr5 60865026 60865533 -91671726 - RLTR13C2 LTR ERVK -285 523 1 5 1049 29 47 0 0 chr5 60865539 60865582 -91671677 + AT_rich Low_complexity Low_complexity 1 43 0 5 1049 4887 54 13 5 chr5 60866002 60866630 -91670629 - L1_Mus1 LINE L1 0 6567 5935 5 1049 959 138 0 0 chr5 60866660 60866798 -91670461 + B1_Mus1 SINE Alu 1 138 -10 5 1049 393 70 0 0 chr5 60866798 60866855 -91670404 + (CAA)n Simple_repeat Simple_repeat 2 58 0 5 1049 1081 178 53 0 chr5 60866855 60867080 -91670179 + Lx5 LINE L1 5054 5290 -587 5 1049 8192 151 14 13 chr5 60867155 60868943 -91668316 + Lx3B LINE L1 5192 6970 -3 5 1049 192 77 0 0 chr5 60868966 60868992 -91668267 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1049 2395 154 12 93 chr5 60868992 60869084 -91668175 + Lx5 LINE L1 5288 5380 -497 5 1049 3231 107 13 8 chr5 60869084 60869557 -91667702 + MT2C_Mm LTR ERVL 1 475 0 5 1049 2836 198 68 54 chr5 60869557 60870639 -91666620 + Lx5 LINE L1 5381 6531 -519 5 1049 1212 253 37 42 chr5 60870641 60871024 -91666235 + Lx5 LINE L1 6670 7050 0 5 1049 278 50 0 24 chr5 60871100 60871141 -91666118 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 5 1049 594 0 0 0 chr5 60872282 60872348 -91664911 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 5 1049 2853 246 58 24 chr5 60872772 60872825 -91664434 - RMER19B LTR ERVK 0 902 847 5 1049 2775 99 80 2 chr5 60872825 60873250 -91664009 - L1_Mus3 LINE L1 -6 6632 6175 5 1049 2853 246 58 24 chr5 60873250 60873908 -91663351 - RMER19B LTR ERVK -56 846 167 5 1049 413 181 43 7 chr5 60873916 60874055 -91663204 + (TA)n Simple_repeat Simple_repeat 2 145 0 5 1049 595 241 3 58 chr5 60874062 60874279 -91662980 - RMER19B LTR ERVK -557 180 1 5 1049 201 39 0 0 chr5 60874590 60874616 -91662643 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 5 1049 240 217 93 17 chr5 60877644 60877751 -91659508 - Lx5 LINE L1 -7 7051 6948 5 1049 999 343 109 55 chr5 60877845 60879074 -91658185 - ORR1D2-int LTR MaLR -45 1464 4 5 1049 616 276 44 25 chr5 60879076 60879280 -91657979 - ORR1D2 LTR MaLR 0 370 163 5 1049 25 51 0 0 chr5 60879413 60879452 -91657807 + AT_rich Low_complexity Low_complexity 1 39 0 5 1049 728 191 28 78 chr5 60879464 60879719 -91657540 + L1_Mur3 LINE L1 2996 3237 -2643 5 1049 837 211 18 53 chr5 60879718 60879943 -91657316 + L1_Mur3 LINE L1 3719 3935 -1945 5 1049 1745 225 67 10 chr5 60879945 60880511 -91656748 + RMER20B LTR ERVK 1 627 0 5 1049 3608 153 60 6 chr5 60880534 60881190 -91656069 - L1_Mur1 LINE L1 -3016 2870 2180 5 1049 207 69 0 0 chr5 60881345 60881374 -91655885 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1049 1082 278 65 70 chr5 60881389 60881795 -91655464 - L1_Rod LINE L1 -1141 4706 4294 5 1049 1630 169 0 30 chr5 60881795 60882093 -91655166 + L1_Mus4 LINE L1 6341 6629 -7 5 1049 1082 278 65 70 chr5 60882093 60882498 -91654761 - L1_Rod LINE L1 -1554 4293 3899 5 1049 306 106 0 0 chr5 60882515 60882562 -91654697 + (CATA)n Simple_repeat Simple_repeat 4 50 0 5 1049 22 35 0 0 chr5 60883002 60883031 -91654228 + AT_rich Low_complexity Low_complexity 1 29 0 5 1049 630 290 73 29 chr5 60883902 60884147 -91653112 - Lx9 LINE L1 -726 6918 6663 5 1049 6141 169 55 38 chr5 60884683 60885895 -91651364 - Lx4A LINE L1 0 7058 5826 5 1049 31479 38 0 3 chr5 60885924 60892088 -91645171 - L1Md_T LINE L1 0 6585 340 5 1049 482 157 33 11 chr5 60892088 60892178 -91645081 - U6 snRNA snRNA -14 93 2 5 1049 31 76 0 0 chr5 60892404 60892470 -91644789 + AT_rich Low_complexity Low_complexity 1 66 0 5 1049 186 43 0 0 chr5 60892470 60892493 -91644766 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1049 977 138 0 0 chr5 60892493 60892631 -91644628 - B1_Mus2 SINE Alu -9 138 1 5 1049 644 115 10 0 chr5 60893009 60893113 -91644146 + (GAAA)n Simple_repeat Simple_repeat 3 107 0 5 1049 1324 168 23 1 chr5 60893116 60893351 -91643908 + Lx3C LINE L1 5294 5565 -312 5 1049 3566 189 3 0 chr5 60893344 60894027 -91643232 - L1_Mur1 LINE L1 -466 5420 4736 5 1049 2674 195 27 19 chr5 60894016 60894601 -91642658 + Lx3C LINE L1 5869 6458 -518 5 1049 2239 209 56 48 chr5 60894585 60895212 -91642047 + Lx3C LINE L1 5988 6972 -4 5 1049 4245 66 5 12 chr5 60895310 60895911 -91641348 - L1Md_F2 LINE L1 0 6582 6001 5 1049 713 278 52 38 chr5 60897025 60897313 -91639946 - RLTR40 LTR ERVK -525 292 1 5 1049 695 18 35 26 chr5 60897609 60897725 -91639534 + (TTCTC)n Simple_repeat Simple_repeat 4 120 0 5 1049 570 201 33 0 chr5 60898039 60898170 -91639089 + L1_Mur2 LINE L1 894 1043 -6043 5 1049 2395 239 71 0 chr5 60898156 60898204 -91639055 + L1_Mur2 LINE L1 1249 1298 -4579 5 1049 816 11 0 0 chr5 60898204 60898297 -91638962 + (GAGAA)n Simple_repeat Simple_repeat 5 97 0 5 1049 2395 239 71 0 chr5 60898297 60898934 -91638325 + L1_Mur2 LINE L1 1299 1982 -3895 5 1049 349 268 38 11 chr5 60899332 60899401 -91637858 + L1_Mur2 LINE L1 1982 2054 -3823 5 1049 180 77 0 0 chr5 60899401 60899427 -91637832 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1049 221 57 29 0 chr5 60899428 60899463 -91637796 + (CCA)n Simple_repeat Simple_repeat 1 36 0 5 1049 349 268 38 11 chr5 60899463 60899576 -91637683 + L1_Mur2 LINE L1 2055 2169 -3708 5 1049 1062 102 0 0 chr5 60899576 60899723 -91637536 + B1_Mm SINE Alu 1 147 0 5 1049 306 98 61 26 chr5 60899732 60899847 -91637412 + (CAAA)n Simple_repeat Simple_repeat 2 120 0 6 1049 1177 162 22 0 chr5 60899850 60900079 -91637180 + L1_Mur2 LINE L1 2155 2388 -3489 5 1049 28398 102 25 31 chr5 60900078 60905164 -91632095 + L1Md_F2 LINE L1 362 5590 -296 6 1049 7132 89 10 4 chr5 60905164 60906154 -91631105 + L1Md_F2 LINE L1 5590 6585 0 6 1049 2161 203 81 17 chr5 60906154 60906217 -91631042 + L1_Mur2 LINE L1 2383 2448 -3429 5 1049 273 29 0 0 chr5 60906217 60906251 -91631008 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1049 2161 203 81 17 chr5 60906251 60906728 -91630531 + L1_Mur2 LINE L1 2449 2957 -2920 5 1049 590 209 16 3 chr5 60906728 60906859 -91630400 + RMER19B LTR ERVK 3 141 -596 6 1049 692 244 104 41 chr5 60906869 60907138 -91630121 + Lx5 LINE L1 5876 6161 -889 6 1049 194 390 13 0 chr5 60907142 60907219 -91630040 + L3 LINE CR1 4158 4235 -254 6 1049 1777 153 41 6 chr5 60908294 60908609 -91628650 + Lx2B LINE L1 6661 6986 -14 6 1049 22 0 0 0 chr5 60908612 60908634 -91628625 + AT_rich Low_complexity Low_complexity 1 22 0 6 1049 728 286 61 29 chr5 60908857 60909102 -91628157 - Lx8 LINE L1 -262 7211 6959 6 1049 309 250 170 64 chr5 60909096 60909267 -91627992 + Lx8 LINE L1 7276 7464 -9 6 1049 21 0 0 0 chr5 60909270 60909291 -91627968 + AT_rich Low_complexity Low_complexity 1 21 0 6 1049 333 0 0 0 chr5 60910509 60910546 -91626713 + (T)n Simple_repeat Simple_repeat 1 37 0 6 1049 355 218 154 0 chr5 60912516 60912626 -91624633 + Lx2B LINE L1 6856 6982 -18 6 1049 588 53 0 0 chr5 60913220 60913296 -91623963 + (TG)n Simple_repeat Simple_repeat 2 77 0 6 1049 648 333 36 7 chr5 60913565 60913846 -91623413 - Lx7 LINE L1 -1347 6349 6061 6 1049 864 121 0 0 chr5 60914342 60914483 -91622776 + (TG)n Simple_repeat Simple_repeat 2 142 0 6 1049 498 91 0 0 chr5 60915135 60915212 -91622047 + (GA)n Simple_repeat Simple_repeat 2 78 0 6 1049 1510 165 77 0 chr5 60915257 60915542 -91621717 - IAPEY3_LTR LTR ERVK -12 320 14 6 1049 4675 114 13 22 chr5 60915550 60916445 -91620814 - IAPEY3-int LTR ERVK 0 7581 6743 6 1049 3262 108 0 2 chr5 60916435 60916890 -91620369 - IAPEY3-int LTR ERVK -1367 6214 5761 6 1049 3084 88 22 38 chr5 60916881 60917328 -91619931 - IAPEY3-int LTR ERVK -1939 5642 5203 6 1049 798 96 35 49 chr5 60917583 60917726 -91619533 - IAPEY3-int LTR ERVK -2911 4670 4530 6 1049 440 179 18 36 chr5 60917752 60917862 -91619397 - MMETn-int LTR ERVK -2380 2464 2357 6 1049 1952 139 117 3 chr5 60917867 60918451 -91618808 - IAPEY3-int LTR ERVK -3135 4271 3567 6 1049 595 210 0 8 chr5 60918477 60918597 -91618662 - IAPEY3-int LTR ERVK -4653 2753 2635 6 1049 298 267 0 55 chr5 60918609 60918700 -91618559 - IAPEY3-int LTR ERVK -4867 2539 2454 6 1049 302 310 88 0 chr5 60918713 60918826 -91618433 - RMER16-int LTR ERVK -5077 1060 938 6 1049 1433 209 112 47 chr5 60918811 60919327 -91617932 - RMER16-int LTR ERVK -4783 623 237 6 1049 9402 144 20 15 chr5 60919419 60921010 -91616249 - IAPEY3-int LTR ERVK -6081 1599 1 6 1049 1483 186 78 0 chr5 60921010 60921306 -91615953 - IAPEY3_LTR LTR ERVK 0 332 14 6 1049 44 0 0 0 chr5 60922115 60922159 -91615100 + AT_rich Low_complexity Low_complexity 1 44 0 6 1049 180 0 0 0 chr5 60922380 60922400 -91614859 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1049 336 48 0 0 chr5 60923809 60923851 -91613408 + (T)n Simple_repeat Simple_repeat 1 42 0 6 1049 9534 92 15 16 chr5 60923859 60924146 -91613113 + Lx3_Mus LINE L1 5624 5914 -1095 6 1049 333 0 0 0 chr5 60924146 60924183 -91613076 + (TAA)n Simple_repeat Simple_repeat 3 39 0 6 1049 9534 92 15 16 chr5 60924183 60925282 -91611977 + Lx3_Mus LINE L1 5915 7008 -1 6 1049 11926 85 30 52 chr5 60925921 60927770 -91609489 - RLTR22_Mus LTR ERVK 0 1808 1 6 1049 714 226 0 0 chr5 60927905 60928073 -91609186 + GA-rich Low_complexity Low_complexity 3 170 0 6 1049 306 206 0 0 chr5 60928925 60928998 -91608261 + CT-rich Low_complexity Low_complexity 2 74 0 6 1049 330 360 8 31 chr5 60929361 60929490 -91607769 - B1_Mur1 SINE Alu -7 142 17 6 1049 36 23 0 0 chr5 60929722 60929765 -91607494 + AT_rich Low_complexity Low_complexity 1 43 0 6 1049 21 57 0 0 chr5 60929795 60929830 -91607429 + AT_rich Low_complexity Low_complexity 1 35 0 6 1049 311 219 10 0 chr5 60929833 60929929 -91607330 + (TA)n Simple_repeat Simple_repeat 1 97 0 6 1049 335 147 89 59 chr5 60929953 60930054 -91607205 + Lx2 LINE L1 6893 6996 -1 6 1049 239 170 19 0 chr5 60930111 60930164 -91607095 + (TTG)n Simple_repeat Simple_repeat 1 54 0 6 1049 542 140 0 45 chr5 60930182 60930294 -91606965 - L1Md_F2 LINE L1 0 6582 6476 6 1049 261 182 0 0 chr5 60930816 60930860 -91606399 - MTC LTR MaLR -295 126 83 6 1049 7996 57 1 5 chr5 60930861 60932495 -91604764 - L1Md_F2 LINE L1 0 6582 4955 6 1049 403 292 75 9 chr5 60932551 60932658 -91604601 + RSINE1 SINE B4 4 117 -48 6 1049 306 67 0 0 chr5 60932658 60932703 -91604556 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1049 441 0 0 0 chr5 60932703 60932751 -91604508 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1049 2208 204 36 118 chr5 60932757 60933472 -91603787 + RMER6C LTR ERVK 26 682 -8 6 1049 315 0 0 0 chr5 60933681 60933716 -91603543 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1049 414 0 0 0 chr5 60933716 60933761 -91603498 + (GA)n Simple_repeat Simple_repeat 2 47 0 6 1049 1769 120 0 0 chr5 60933852 60934110 -91603149 - L1_Mus3 LINE L1 -346 6292 6035 6 1049 21 36 0 0 chr5 60934113 60934141 -91603118 + AT_rich Low_complexity Low_complexity 1 28 0 6 1049 2308 161 4 51 chr5 60934204 60934674 -91602585 + L1_Mur2 LINE L1 3484 3931 -1946 6 1049 4722 183 33 5 chr5 60934678 60935651 -91601608 + L1_Mur2 LINE L1 4364 5363 -514 6 1049 10784 26 1 0 chr5 60935649 60936919 -91600340 + L1_Mm LINE L1 4316 5586 -297 6 1049 8026 53 0 0 chr5 60936919 60937915 -91599344 + L1Md_T LINE L1 5587 6582 0 6 1049 23230 58 31 4 chr5 60938015 60941756 -91595503 + L1Md_F LINE L1 263 4084 -1799 6 131 37426 52 2 23 chr5 60941756 60948495 -91588764 - L1Md_T LINE L1 0 6582 99 6 1050 12510 30 9 1 chr5 60948502 60950005 -91587254 + L1_Mm LINE L1 4071 5586 -297 6 1050 7983 55 0 0 chr5 60950005 60951000 -91586259 + L1Md_T LINE L1 5587 6581 -1 6 1050 7716 167 38 16 chr5 60951161 60952749 -91584510 + Lx2 LINE L1 5357 6996 -1 6 1050 233 29 29 0 chr5 60953518 60953552 -91583707 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1050 2847 196 52 36 chr5 60953827 60954638 -91582621 - RMER6C LTR ERVK 0 720 1 6 1050 895 101 0 7 chr5 60955486 60955625 -91581634 - L1_Mus1 LINE L1 0 6567 6430 6 1050 1012 54 0 0 chr5 60955626 60955755 -91581504 + L1_Mus1 LINE L1 5907 6035 -532 6 1050 7139 105 4 3 chr5 60955812 60957339 -91579920 - L1_Mus2 LINE L1 -1 6565 5037 6 1050 2331 103 0 0 chr5 60957339 60957669 -91579590 + L1_Mus2 LINE L1 4700 5029 -854 6 1050 28 29 0 0 chr5 60958131 60958166 -91579093 + AT_rich Low_complexity Low_complexity 1 35 0 6 1050 21 36 0 0 chr5 60958234 60958262 -91578997 + AT_rich Low_complexity Low_complexity 1 28 0 6 1050 1176 61 0 0 chr5 60958494 60958641 -91578618 - B1_Mm SINE Alu 0 147 1 6 1050 5489 139 31 12 chr5 60960667 60961614 -91575645 - L1_Mur2 LINE L1 -181 5696 4732 6 1050 1955 132 0 42 chr5 60963269 60963626 -91573633 - Lx3C LINE L1 -451 5435 5094 6 1050 7648 147 28 8 chr5 60963620 60965139 -91572120 + Lx3C LINE L1 5421 6976 0 6 1050 22 56 0 0 chr5 60965140 60965176 -91572083 + AT_rich Low_complexity Low_complexity 1 36 0 6 1050 537 234 19 7 chr5 60966872 60967027 -91570232 + L1_Mur3 LINE L1 3914 4070 -1810 6 1050 1718 294 9 34 chr5 60967080 60967604 -91569655 + Lx7 LINE L1 6551 7061 -635 6 1050 2036 171 26 148 chr5 60968295 60968802 -91568457 - RLTR41 LTR ERV1 -1 445 1 6 1050 3932 152 3 24 chr5 60970247 60970920 -91566339 + Lx LINE L1 5991 6649 -5 6 1050 189 94 0 0 chr5 60971261 60971293 -91565966 + (CTTG)n Simple_repeat Simple_repeat 1 32 0 6 1050 198 103 0 0 chr5 60971294 60971323 -91565936 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 6 1050 1206 97 0 0 chr5 60971323 60971498 -91565761 + (TTTC)n Simple_repeat Simple_repeat 1 175 0 6 1050 358 328 60 0 chr5 60971546 60971680 -91565579 - Lx8 LINE L1 -146 7327 7186 6 1050 197 0 0 67 chr5 60971820 60971850 -91565409 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1050 560 353 110 3 chr5 60971909 60972290 -91564969 + Lx8 LINE L1 6436 6857 -616 6 1050 392 127 0 0 chr5 60972538 60972601 -91564658 - Lx3A LINE L1 -10 6971 6909 6 1050 640 261 63 47 chr5 60973042 60973360 -91563899 + RLTR15 LTR ERVK 1 323 -36 6 1050 272 271 31 184 chr5 60973516 60973679 -91563580 - ORR1D1 LTR MaLR 0 374 237 6 1050 624 91 0 0 chr5 60973717 60973805 -91563454 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 6 1050 3878 71 0 0 chr5 60974499 60975138 -91562121 - L1_Mus1 LINE L1 -490 6077 5439 6 1050 4254 96 0 0 chr5 60975138 60975711 -91561548 + L1_Mus1 LINE L1 5995 6567 0 6 1050 687 243 297 62 chr5 60976889 60977281 -91559978 + RLTR11A LTR ERVK 1 500 -28 6 1050 319 300 20 0 chr5 60977542 60977642 -91559617 - Lx8 LINE L1 -120 7353 7252 6 1050 182 226 94 0 chr5 60978157 60978210 -91559049 - L3b LINE CR1 -253 229 172 6 1050 21 0 0 0 chr5 60979663 60979684 -91557575 + AT_rich Low_complexity Low_complexity 1 21 0 6 1050 23 0 0 0 chr5 60980071 60980094 -91557165 + AT_rich Low_complexity Low_complexity 1 23 0 6 1050 334 356 81 6 chr5 60980572 60980733 -91556526 - L2 LINE L2 -496 2923 2751 6 1050 240 285 93 72 chr5 60982555 60982748 -91554511 - L1M2 LINE L1 -592 5708 5512 6 1050 1183 61 0 0 chr5 60982936 60983083 -91554176 - B1_Mm SINE Alu 0 147 1 6 1050 3624 265 92 3 chr5 60983084 60984163 -91553096 - Lx9 LINE L1 -158 7486 6312 6 1050 25 51 0 0 chr5 60984357 60984396 -91552863 + AT_rich Low_complexity Low_complexity 1 39 0 6 1050 1458 115 7 100 chr5 60984410 60984700 -91552559 + L1_Mus3 LINE L1 6356 6618 -20 6 1050 294 224 0 141 chr5 60984695 60984794 -91552465 + Lx9 LINE L1 5829 5913 -1731 6 1050 1036 105 22 6 chr5 60984820 60985002 -91552257 + Lx3_Mus LINE L1 6825 7009 0 6 1050 231 301 41 14 chr5 60985044 60985189 -91552070 - L1M3 LINE L1 -3176 2964 2816 6 1050 297 0 0 0 chr5 60985204 60985237 -91552022 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1050 1007 208 42 0 chr5 60985401 60985637 -91551622 + L1_Mur3 LINE L1 4895 5140 -740 6 1050 3692 206 116 26 chr5 60985637 60986524 -91550735 + RLTR25A LTR ERVK 1 967 -136 6 1050 429 238 19 28 chr5 60986542 60986650 -91550609 - RLTR23 LTR ERV1 0 430 324 6 1050 833 182 19 7 chr5 60987087 60987242 -91550017 + RLTR25B LTR ERVK 872 1028 0 6 1050 2141 234 11 88 chr5 60987242 60987355 -91549904 + L1_Mur3 LINE L1 5135 5245 -635 6 1050 498 17 0 0 chr5 60987355 60987414 -91549845 + (CAAAC)n Simple_repeat Simple_repeat 1 59 0 6 1050 2141 234 11 88 chr5 60987414 60988016 -91549243 + L1_Mur3 LINE L1 5246 5795 -85 6 1050 604 260 20 0 chr5 60988017 60988163 -91549096 + Lx4A LINE L1 6898 7046 -12 6 1050 2017 236 67 8 chr5 60988283 60988805 -91548454 - Lx6 LINE L1 -792 6668 6116 7 1050 21 36 0 0 chr5 60989129 60989157 -91548102 + AT_rich Low_complexity Low_complexity 1 28 0 7 1050 560 62 0 12 chr5 60989321 60989402 -91547857 + B1_Mus2 SINE Alu 68 147 0 7 1050 245 246 18 0 chr5 60990263 60990320 -91546939 + (TA)n Simple_repeat Simple_repeat 1 58 0 7 1050 35 83 0 0 chr5 60990363 60990447 -91546812 + AT_rich Low_complexity Low_complexity 1 84 0 7 1050 295 234 30 15 chr5 60992478 60992614 -91544645 - L1M2 LINE L1 -848 5455 5318 7 1050 657 209 0 0 chr5 60992780 60992928 -91544331 + GA-rich Low_complexity Low_complexity 3 150 0 7 1050 2630 285 41 15 chr5 60992928 60993811 -91543448 - Lx7 LINE L1 -329 7367 6462 7 1050 1843 244 75 34 chr5 60993835 60994564 -91542695 - Lx7 LINE L1 -1392 6304 5543 7 1050 251 299 90 76 chr5 60994576 60994866 -91542393 - L1M2 LINE L1 -813 5330 5037 7 1050 239 269 35 28 chr5 60995222 60995367 -91541892 - L1M2 LINE L1 -1480 4660 4515 7 1050 70 86 0 0 chr5 60995450 60995625 -91541634 + AT_rich Low_complexity Low_complexity 1 175 0 7 1050 301 353 100 50 chr5 60995707 60995907 -91541352 + B3 SINE B2 1 210 -6 7 1050 519 331 41 14 chr5 60995918 60996209 -91541050 + L1MA8 LINE L1 5675 5973 -318 7 1050 2274 205 69 12 chr5 60996273 60996782 -91540477 + RLTR20A LTR ERVK 4 541 0 7 1050 374 296 121 0 chr5 60996842 60996974 -91540285 + B1_Mur1 SINE Alu 2 149 0 7 1050 217 250 0 0 chr5 60996975 60997027 -91540232 + GA-rich Low_complexity Low_complexity 2 53 0 7 1050 232 224 52 81 chr5 60997033 60997169 -91540090 + L1MA8 LINE L1 6152 6283 -8 7 1050 5302 176 49 6 chr5 60997572 60998616 -91538643 - Lx3C LINE L1 -3 6973 5885 7 1050 261 0 0 0 chr5 60998782 60998811 -91538448 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1050 378 0 0 0 chr5 60998811 60998853 -91538406 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1050 21 0 0 0 chr5 60999078 60999099 -91538160 + AT_rich Low_complexity Low_complexity 1 21 0 7 1050 213 103 0 0 chr5 61001781 61001803 -91535456 + (GA)n Simple_repeat Simple_repeat 2 23 0 1 1050 965 30 71 12 chr5 61001803 61001972 -91535287 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 2 1050 213 103 0 0 chr5 61001972 61001988 -91535271 + (GA)n Simple_repeat Simple_repeat 2 17 0 3 1050 189 121 0 0 chr5 61001991 61002024 -91535235 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 4 1050 476 303 253 15 chr5 61002035 61002300 -91534959 + Lx6 LINE L1 7095 7422 -38 5 1050 25 31 0 0 chr5 61002404 61002436 -91534823 + AT_rich Low_complexity Low_complexity 1 32 0 6 1050 180 125 0 0 chr5 61002439 61002471 -91534788 + (TA)n Simple_repeat Simple_repeat 1 32 0 7 1050 5366 111 10 0 chr5 61002486 61003263 -91533996 - L1_Mus4 LINE L1 -15 6621 5837 8 1050 202 184 41 0 chr5 61003294 61003343 -91533916 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 9 1050 418 199 38 54 chr5 61005148 61005334 -91531925 + RMER17C LTR ERVK 91 273 -137 1 1050 358 324 99 64 chr5 61005780 61006123 -91531136 - Lx8 LINE L1 -1 7472 7118 1 1050 26 82 0 0 chr5 61006759 61006820 -91530439 + AT_rich Low_complexity Low_complexity 1 61 0 1 1050 803 329 10 0 chr5 61007139 61007346 -91529913 + B3 SINE B2 3 211 -5 1 1050 25 51 0 0 chr5 61008041 61008080 -91529179 + AT_rich Low_complexity Low_complexity 1 39 0 1 1050 356 40 0 20 chr5 61008660 61008711 -91528548 + (TATAA)n Simple_repeat Simple_repeat 2 51 0 1 1050 927 301 47 20 chr5 61009007 61009350 -91527909 - MER70A LTR ERVL -16 456 105 1 1050 2704 184 6 6 chr5 61010821 61011555 -91525704 - Lx5 LINE L1 -914 6136 5400 1 1050 417 200 109 10 chr5 61011550 61011651 -91525608 + Lx5 LINE L1 6167 6277 -773 1 1050 386 291 68 19 chr5 61011659 61011820 -91525439 + Lx5 LINE L1 6878 7046 -4 1 1050 33 73 0 0 chr5 61012101 61012169 -91525090 + AT_rich Low_complexity Low_complexity 1 68 0 1 1050 450 0 0 0 chr5 61012193 61012243 -91525016 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 2 1050 5394 83 5 4 chr5 61012760 61013494 -91523765 + L1_Mus1 LINE L1 5833 6567 0 2 1050 439 303 55 61 chr5 61014038 61014368 -91522891 + Lx9 LINE L1 6963 7290 -354 2 1050 37 0 0 0 chr5 61014462 61014499 -91522760 + AT_rich Low_complexity Low_complexity 1 37 0 2 1050 1479 196 174 15 chr5 61014612 61015104 -91522155 - RMER4B LTR ERVK 0 585 16 2 1050 549 88 0 0 chr5 61017593 61017673 -91519586 + (GA)n Simple_repeat Simple_repeat 1 80 0 2 1050 46 0 0 0 chr5 61018186 61018232 -91519027 + AT_rich Low_complexity Low_complexity 1 46 0 2 1050 405 58 0 0 chr5 61018319 61018371 -91518888 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1050 703 272 99 14 chr5 61018378 61018661 -91518598 - Lx9 LINE L1 -186 7458 7152 2 1050 1340 117 5 5 chr5 61018721 61018928 -91518331 + L1_Mus1 LINE L1 6361 6567 0 2 1050 26 30 0 0 chr5 61018928 61018961 -91518298 + AT_rich Low_complexity Low_complexity 1 33 0 3 1050 439 304 24 14 chr5 61018961 61019106 -91518153 + Lx9 LINE L1 6908 7186 -458 3 1050 519 45 0 0 chr5 61019401 61019467 -91517792 + (TC)n Simple_repeat Simple_repeat 1 66 0 3 1050 1867 231 29 64 chr5 61019540 61020119 -91517140 + Lx7 LINE L1 7138 7696 0 3 1050 707 58 0 0 chr5 61020250 61020337 -91516922 - L1Md_F3 LINE L1 -145 6439 6353 3 1050 940 24 8 38 chr5 61020337 61020470 -91516789 + L1Md_F3 LINE L1 6444 6572 -12 3 1050 1216 255 22 34 chr5 61021118 61021439 -91515820 - Lx5 LINE L1 -429 6621 6305 3 1050 970 239 75 11 chr5 61021425 61021691 -91515568 + Lx5 LINE L1 6020 6302 -748 3 1050 2460 172 30 4 chr5 61021864 61022336 -91514923 + Lx LINE L1 6169 6652 -2 3 1050 23 68 0 0 chr5 61023409 61023453 -91513806 + AT_rich Low_complexity Low_complexity 1 44 0 3 1050 29 47 0 0 chr5 61024640 61024683 -91512576 + AT_rich Low_complexity Low_complexity 1 43 0 3 1050 2307 163 9 61 chr5 61024792 61025440 -91511819 + Lx3A LINE L1 5514 6140 -918 3 1050 241 159 72 31 chr5 61025443 61025540 -91511719 + A-rich Low_complexity Low_complexity 2 102 0 4 1050 22 35 0 0 chr5 61026631 61026660 -91510599 + AT_rich Low_complexity Low_complexity 1 29 0 4 1050 2315 149 67 7 chr5 61026807 61027239 -91510020 - Lx LINE L1 -1 6653 6196 4 1050 268 300 88 72 chr5 61028087 61028281 -91508978 + B3A SINE B2 1 197 -1 4 1050 21 36 0 0 chr5 61029617 61029645 -91507614 + AT_rich Low_complexity Low_complexity 1 28 0 4 1050 27 73 0 0 chr5 61029728 61029783 -91507476 + AT_rich Low_complexity Low_complexity 1 55 0 4 1050 4025 228 138 25 chr5 61030792 61031460 -91505799 - Lx2B LINE L1 -6 6994 6245 4 1050 3028 50 26 5 chr5 61031460 61031846 -91505413 + MTA_Mm LTR MaLR 3 396 0 4 1050 8303 53 38 2 chr5 61031846 61032906 -91504353 + MTA_Mm-int LTR MaLR 1 1098 0 4 1050 3127 63 2 5 chr5 61032906 61033302 -91503957 + MTA_Mm LTR MaLR 1 396 0 4 1050 4025 228 138 25 chr5 61033302 61033463 -91503796 - Lx2B LINE L1 -756 6244 6082 4 1050 1489 122 72 215 chr5 61033463 61034017 -91503242 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1050 4025 228 138 25 chr5 61034017 61034369 -91502890 - Lx2B LINE L1 -919 6081 5678 4 1050 3169 158 56 8 chr5 61034365 61035021 -91502238 - L1_Mur1 LINE L1 -2198 3688 3001 4 1050 406 163 214 0 chr5 61035023 61035121 -91502138 - PB1D9 SINE Alu 0 120 2 5 1050 2928 199 25 5 chr5 61035454 61036025 -91501234 - Lx LINE L1 -5 6649 6068 5 1050 4521 198 4 14 chr5 61036855 61037505 -91499754 - Lx2B LINE L1 -231 5646 4996 4 1050 3678 34 9 2 chr5 61037505 61037951 -91499308 - L1Md_F3 LINE L1 -2 6582 6134 5 1050 4521 198 4 14 chr5 61037951 61038243 -91499016 - Lx2B LINE L1 -882 4995 4713 4 1050 4221 130 27 6 chr5 61038238 61038435 -91498824 + Lx2A1 LINE L1 5654 5857 -1151 5 1050 234 116 0 0 chr5 61038435 61038478 -91498781 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1050 4221 130 27 6 chr5 61038478 61038953 -91498306 + Lx2A1 LINE L1 5858 6340 -668 5 1050 23 33 0 0 chr5 61039012 61039042 -91498217 + AT_rich Low_complexity Low_complexity 1 30 0 5 1050 327 49 0 0 chr5 61039109 61039150 -91498109 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1050 234 312 0 0 chr5 61039286 61039363 -91497896 + MER44D DNA MER2_type 41 117 -588 5 1050 235 403 49 40 chr5 61039390 61039615 -91497644 - MER31A LTR ERV1 -101 384 158 5 1050 652 186 21 14 chr5 61039711 61039853 -91497406 + L1_Mur2 LINE L1 2861 3003 -2874 5 1050 1061 95 0 20 chr5 61039858 61040008 -91497251 + B1_Mus1 SINE Alu 2 148 0 6 1050 180 0 0 0 chr5 61040008 61040028 -91497231 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1050 336 24 0 0 chr5 61040726 61040767 -91496492 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1050 908 314 82 58 chr5 61040880 61041403 -91495856 - Lx6 LINE L1 -18 7032 6506 6 1050 1398 253 87 20 chr5 61041410 61042224 -91495035 - Lx6 LINE L1 -667 6391 5473 6 1050 406 305 91 118 chr5 61042224 61042749 -91494510 + RLTR11A2 LTR ERVK 1 511 -16 6 1050 644 176 29 14 chr5 61042757 61042895 -91494364 - Lx6 LINE L1 -401 5479 5340 6 1050 35320 35 0 0 chr5 61042896 61048475 -91488784 + L1Md_T LINE L1 1 5589 -297 6 1050 8935 7 0 0 chr5 61048475 61049471 -91487788 + L1Md_T LINE L1 5590 6585 0 6 1050 3506 218 41 16 chr5 61049488 61050388 -91486871 - Lx6 LINE L1 -534 5343 4421 6 1050 2142 148 20 41 chr5 61050383 61050825 -91486434 - L1_Mur3 LINE L1 -1020 4857 4425 6 1050 5792 204 31 3 chr5 61050820 61052032 -91485227 + Lx3C LINE L1 5728 6973 -3 6 1050 542 245 7 19 chr5 61052055 61052209 -91485050 - L1_Mur3 LINE L1 -1440 4446 4295 6 1050 4477 92 19 8 chr5 61052209 61052854 -91484405 - L1Md_F2 LINE L1 -3 6579 5928 6 1050 7092 59 0 1 chr5 61052854 61053815 -91483444 + L1Md_F2 LINE L1 4973 5931 -651 6 1050 2198 232 63 109 chr5 61053859 61054144 -91483115 - L1_Mur3 LINE L1 -1674 4203 3917 6 1050 423 0 0 0 chr5 61054144 61054191 -91483068 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 6 1050 2198 232 63 109 chr5 61054191 61054715 -91482544 - L1_Mur3 LINE L1 -1961 3916 3434 6 1050 2836 86 2 19 chr5 61054715 61055130 -91482129 - L1Md_F2 LINE L1 -12 6570 6163 7 1050 2198 232 63 109 chr5 61055130 61055329 -91481930 - L1_Mur3 LINE L1 -2444 3433 3240 6 1050 8295 156 14 9 chr5 61055341 61057699 -91479560 - Lx LINE L1 0 6654 4287 7 1050 2248 224 166 98 chr5 61057704 61058523 -91478736 - L1_Mur3 LINE L1 -2633 3247 2357 6 1050 1058 83 14 0 chr5 61058523 61058667 -91478592 - B1_Mm SINE Alu 0 147 2 7 1050 2248 224 166 98 chr5 61058667 61058956 -91478303 - L1_Mur3 LINE L1 -3524 2356 2058 6 1050 570 82 0 0 chr5 61058956 61059041 -91478218 + (TG)n Simple_repeat Simple_repeat 2 86 0 7 1050 2248 224 166 98 chr5 61059041 61059144 -91478115 - L1_Mur3 LINE L1 -3823 2057 1953 6 1050 674 352 21 12 chr5 61059560 61059885 -91477374 - Lx8 LINE L1 -564 6909 6582 7 1050 437 293 78 50 chr5 61060307 61060526 -91476733 + RMER15 LTR ERVL 351 575 0 7 1050 3803 50 29 0 chr5 61062131 61062610 -91474649 - L1Md_F3 LINE L1 -14 6570 6078 7 1050 21 36 0 0 chr5 61063322 61063350 -91473909 + AT_rich Low_complexity Low_complexity 1 28 0 7 1050 558 108 0 0 chr5 61063532 61063615 -91473644 + (CA)n Simple_repeat Simple_repeat 1 83 0 7 1050 1692 145 6 21 chr5 61063711 61064058 -91473201 - Lx4A LINE L1 0 7058 6639 7 1050 1525 156 265 1 chr5 61064317 61064683 -91472576 - Lx LINE L1 -299 6355 5914 8 1050 2702 135 5 7 chr5 61064680 61065106 -91472153 - Lx LINE L1 -87 5796 5372 8 1050 244 364 31 24 chr5 61066992 61067285 -91469974 + Kanga2_a DNA Tc2 254 548 -340 8 1050 564 29 0 0 chr5 61067673 61067743 -91469516 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1050 1329 73 0 0 chr5 61069106 61069284 -91467975 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 8 1050 32 26 0 0 chr5 61069949 61069988 -91467271 + AT_rich Low_complexity Low_complexity 1 39 0 8 1050 21 0 0 0 chr5 61070006 61070027 -91467232 + AT_rich Low_complexity Low_complexity 1 21 0 8 1050 2403 94 28 0 chr5 61070641 61070993 -91466266 + L1Md_F2 LINE L1 6221 6582 0 8 1050 252 0 0 0 chr5 61071789 61071817 -91465442 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1050 3421 30 0 0 chr5 61071864 61072260 -91464999 + MTA_Mm LTR MaLR 1 396 0 8 1050 9481 21 2 0 chr5 61072260 61073356 -91463903 + MTA_Mm-int LTR MaLR 1 1098 0 8 1050 3411 33 0 0 chr5 61073356 61073752 -91463507 + MTA_Mm LTR MaLR 1 396 0 8 1050 543 330 19 162 chr5 61073870 61074235 -91463024 - MTE2a LTR MaLR -48 331 19 8 1050 23 0 0 0 chr5 61074490 61074513 -91462746 + AT_rich Low_complexity Low_complexity 1 23 0 9 1050 518 349 53 45 chr5 61074648 61074912 -91462347 - MER70A LTR ERVL -3 469 204 9 1050 717 232 13 72 chr5 61075048 61075285 -91461974 - RLTR31_Mur LTR ERVK -330 223 1 9 1050 2188 220 70 56 chr5 61075524 61076135 -91461124 - RMER6C LTR ERVK -70 620 1 9 1050 2298 198 30 46 chr5 61076135 61076678 -91460581 - RMER6-int LTR ERVK 0 3177 2662 9 1050 1874 342 44 5 chr5 61076721 61077495 -91459764 - Lx8 LINE L1 -148 7325 6522 9 1050 251 186 75 85 chr5 61077521 61077627 -91459632 + L1M LINE L1 5306 5410 -774 9 1050 1315 302 18 19 chr5 61077631 61078193 -91459066 - Lx6 LINE L1 -79 7381 6460 9 1050 6792 214 23 40 chr5 61078192 61078959 -91458300 + L1_Mur3 LINE L1 3510 4285 -1595 9 1050 976 80 27 0 chr5 61078959 61079109 -91458150 + (GAAAA)n Simple_repeat Simple_repeat 2 155 0 9 131 6792 214 23 40 chr5 61079109 61080110 -91457149 + L1_Mur3 LINE L1 4286 5248 -632 9 1051 2946 264 60 24 chr5 61080151 61081034 -91456225 + Lx6 LINE L1 6095 7009 -451 9 1051 29 28 0 0 chr5 61081300 61081336 -91455923 + AT_rich Low_complexity Low_complexity 1 36 0 1 1051 1169 47 11 71 chr5 61082560 61082743 -91454516 - L1_Mus2 LINE L1 -523 6043 5872 1 1051 3631 104 6 16 chr5 61082743 61083288 -91453971 + L1_Mus2 LINE L1 6028 6566 0 1 1051 2294 272 85 48 chr5 61083289 61084078 -91453181 + RMER15-int LTR ERVL 4156 4973 -26 1 1051 2006 258 97 6 chr5 61084078 61084358 -91452901 + RMER15 LTR ERVL 1 285 -290 1 1051 7109 54 1 11 chr5 61084358 61085261 -91451998 + L1Md_F2 LINE L1 5670 6564 -18 1 1051 261 0 0 0 chr5 61085261 61085290 -91451969 + (TA)n Simple_repeat Simple_repeat 1 29 0 1 1051 2006 258 97 6 chr5 61085296 61085542 -91451717 + RMER15 LTR ERVL 286 573 -2 1 1051 264 345 6 22 chr5 61085801 61085982 -91451277 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 1 1051 252 290 0 28 chr5 61086440 61086511 -91450748 - RMER15 LTR ERVL -291 284 216 1 1051 285 370 11 0 chr5 61086610 61086702 -91450557 + B4 SINE B4 46 138 -154 1 1051 273 311 22 0 chr5 61086758 61086848 -91450411 + RSINE1 SINE B4 36 127 -38 1 1051 21 57 0 0 chr5 61088190 61088225 -91449034 + AT_rich Low_complexity Low_complexity 1 35 0 1 1051 266 0 29 0 chr5 61089882 61089916 -91447343 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1051 216 307 12 85 chr5 61089916 61089998 -91447261 + ID_B1 SINE B4 78 153 -71 1 1051 243 318 16 91 chr5 61089931 61090052 -91447207 + PB1D10 SINE Alu 6 117 0 1 1051 865 311 81 32 chr5 61090410 61090756 -91446503 - MTD LTR MaLR -52 367 5 1 1051 3175 147 54 64 chr5 61090880 61091525 -91445734 - RLTR26 LTR ERVK 0 642 4 1 1051 1814 144 89 15 chr5 61091555 61091880 -91445379 - Lx3C LINE L1 -2 6974 6626 1 1051 1095 302 159 74 chr5 61091880 61092484 -91444775 - MTC-int LTR MaLR -215 1043 382 1 1051 608 156 33 26 chr5 61092484 61092635 -91444624 - Lx LINE L1 -13 6641 6490 1 1051 1095 302 159 74 chr5 61092635 61092695 -91444564 - MTC-int LTR MaLR -877 381 322 1 1051 24 0 0 0 chr5 61092720 61092744 -91444515 + AT_rich Low_complexity Low_complexity 1 24 0 1 1051 300 83 0 0 chr5 61092744 61092792 -91444467 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1 1051 700 182 20 34 chr5 61092794 61092942 -91444317 - B1_Mur4 SINE Alu -2 148 3 1 1051 28 0 0 0 chr5 61092945 61092973 -91444286 + AT_rich Low_complexity Low_complexity 1 28 0 1 1051 645 312 176 26 chr5 61092976 61093327 -91443932 - MTD LTR MaLR -15 404 1 1 1051 21 36 0 0 chr5 61093533 61093561 -91443698 + AT_rich Low_complexity Low_complexity 1 28 0 1 1051 2302 197 16 8 chr5 61094126 61094668 -91442591 + Lx5 LINE L1 5530 6083 -967 1 1051 3347 137 54 68 chr5 61094668 61095318 -91441941 - RLTR26 LTR ERVK -1 641 1 1 1051 2912 234 38 19 chr5 61095318 61096011 -91441248 + Lx5 LINE L1 6077 6782 -268 1 1051 1036 178 21 29 chr5 61096192 61096506 -91440753 + RMER17C LTR ERVK 1 408 -2 1 1051 1197 207 69 4 chr5 61096953 61097215 -91440044 - ORR1B1 LTR MaLR 0 394 116 1 1051 376 373 14 50 chr5 61097237 61097457 -91439802 + MLT1B LTR MaLR 177 388 -2 1 1051 24 0 0 0 chr5 61097737 61097761 -91439498 + AT_rich Low_complexity Low_complexity 1 24 0 1 1051 447 269 83 16 chr5 61098202 61098323 -91438936 + B3 SINE B2 8 136 -80 1 1051 213 39 0 0 chr5 61100321 61100347 -91436912 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 1 1051 546 16 0 0 chr5 61100348 61100411 -91436848 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1051 1058 255 108 12 chr5 61101020 61101353 -91435906 + ORR1B2 LTR MaLR 1 365 -2 1 1051 23 0 0 0 chr5 61102813 61102836 -91434423 + AT_rich Low_complexity Low_complexity 1 23 0 1 1051 443 316 10 123 chr5 61103057 61103252 -91434007 + RLTR18B LTR ERVK 1 173 -443 1 1051 226 239 15 0 chr5 61103331 61103398 -91433861 + A-rich Low_complexity Low_complexity 1 68 0 1 1051 484 314 106 48 chr5 61103401 61103704 -91433555 + RLTR18B LTR ERVK 132 558 -58 1 1051 539 292 48 36 chr5 61103682 61103931 -91433328 - RLTR15 LTR ERVK -4 355 104 1 1051 1419 189 23 13 chr5 61103941 61104242 -91433017 - RMER19C LTR ERVK -2 609 306 1 1051 2079 255 82 90 chr5 61105018 61106205 -91431054 - RMER1B Other Other -4 1062 1 1 1051 843 257 206 18 chr5 61106293 61106574 -91430685 - RMER1B Other Other -680 386 53 1 1051 5249 67 41 0 chr5 61106616 61107529 -91429730 - L1_Mus1 LINE L1 -275 6292 5352 1 1051 2153 65 26 33 chr5 61107529 61107612 -91429647 + L1_Mus1 LINE L1 6267 6349 -218 1 1051 2878 57 48 3 chr5 61107612 61107983 -91429276 + RLTR10 LTR ERVK 1 388 -2 1 1051 2153 65 26 33 chr5 61107983 61108202 -91429057 + L1_Mus1 LINE L1 6350 6567 0 1 1051 270 302 144 102 chr5 61110567 61110786 -91426473 + MLT1B LTR MaLR 14 260 -130 1 1051 498 276 31 8 chr5 61110786 61110914 -91426345 + B1_Mur3 SINE Alu 1 131 -18 1 1051 270 302 144 102 chr5 61110914 61111055 -91426204 + MLT1B LTR MaLR 261 389 -1 1 1051 578 201 48 7 chr5 61111535 61111674 -91425585 - ORR1D1 LTR MaLR -220 164 13 1 1051 28731 82 46 6 chr5 61111707 61117839 -91419420 - L1Md_F2 LINE L1 -3 6579 185 1 1051 2130 135 0 58 chr5 61118132 61118479 -91418780 + ORR1A2 LTR MaLR 1 327 0 1 1051 243 61 0 0 chr5 61119371 61119404 -91417855 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1051 306 0 0 0 chr5 61119721 61119755 -91417504 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1051 36873 8 1 1 chr5 61120001 61125995 -91411264 + L1Md_A LINE L1 1 5586 -297 1 1051 8823 15 0 0 chr5 61125995 61126991 -91410268 + L1Md_A LINE L1 5587 6582 0 1 1051 216 0 0 0 chr5 61128423 61128447 -91408812 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1051 859 123 7 7 chr5 61129339 61129494 -91407765 + (GAA)n Simple_repeat Simple_repeat 1 155 0 1 1051 5970 111 22 9 chr5 61129881 61130779 -91406480 - Lx LINE L1 0 6654 5745 1 1051 21 0 0 0 chr5 61130933 61130954 -91406305 + AT_rich Low_complexity Low_complexity 1 21 0 1 1051 27 0 0 0 chr5 61131395 61131422 -91405837 + AT_rich Low_complexity Low_complexity 1 27 0 1 1051 800 317 22 44 chr5 61131438 61131709 -91405550 - Lx5 LINE L1 -37 7013 6749 1 1051 7178 66 3 16 chr5 61132417 61133577 -91403682 - L1Md_F2 LINE L1 -4 6578 5433 1 1051 1815 71 0 0 chr5 61133569 61133821 -91403438 + L1_Mm LINE L1 4027 4278 -1605 1 1051 529 330 25 5 chr5 61133824 61134022 -91403237 - MTD LTR MaLR -208 211 10 1 1051 322 375 28 51 chr5 61134438 61134552 -91402707 + B3A SINE B2 2 111 -87 1 1051 1982 132 21 59 chr5 61134552 61134891 -91402368 + ORR1A3 LTR MaLR 1 326 0 1 1051 322 375 28 51 chr5 61134891 61134953 -91402306 + B3A SINE B2 112 174 -24 1 1051 402 147 0 0 chr5 61135756 61135824 -91401435 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1051 508 317 87 29 chr5 61136331 61136539 -91400720 - MTD LTR MaLR -181 238 19 1 1051 1071 89 0 14 chr5 61136694 61136842 -91400417 - B1_Mus1 SINE Alu -1 147 2 1 1051 446 227 188 74 chr5 61136888 61137064 -91400195 - B3A SINE B2 0 198 3 1 1051 810 249 37 35 chr5 61137297 61137514 -91399745 - B3A SINE B2 -5 211 1 1 1051 1965 160 15 9 chr5 61138436 61138777 -91398482 + Lx4A LINE L1 6716 7058 0 1 1051 378 74 0 0 chr5 61139113 61139167 -91398092 + (TA)n Simple_repeat Simple_repeat 2 55 0 1 1051 429 83 0 0 chr5 61139291 61139351 -91397908 - B2_Mm2 SINE B2 -134 61 2 1 1051 1202 77 70 17 chr5 61139354 61139526 -91397733 + B2_Mm1a SINE B2 13 193 0 1 1051 955 187 113 5 chr5 61139730 61139934 -91397325 + URR1A DNA MER1_type 1 226 0 1 1051 180 0 0 0 chr5 61140077 61140097 -91397162 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1051 1208 68 0 0 chr5 61142265 61142413 -91394846 + B1_Mus1 SINE Alu 1 148 0 1 1051 3435 47 28 9 chr5 61143375 61143803 -91393456 - RLTR10C LTR ERVK 0 436 1 1 1051 891 320 92 6 chr5 61144037 61144383 -91392876 + MTD LTR MaLR 44 419 0 1 1051 369 0 0 0 chr5 61145155 61145196 -91392063 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1051 21 0 0 0 chr5 61145224 61145245 -91392014 + AT_rich Low_complexity Low_complexity 1 21 0 1 1051 745 30 20 0 chr5 61145517 61145617 -91391642 + (TC)n Simple_repeat Simple_repeat 1 102 0 1 1051 279 235 58 69 chr5 61145617 61145704 -91391555 - RSINE1 SINE B4 -1 164 79 1 1051 2188 118 15 6 chr5 61145717 61146051 -91391208 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1051 6594 38 3 17 chr5 61146053 61146915 -91390344 - IAPEz-int LTR ERVK -2 6479 5630 1 1051 21443 67 37 5 chr5 61146901 61149875 -91387384 - IAPEz-int LTR ERVK -3405 3076 8 1 1051 2147 118 18 6 chr5 61149875 61150208 -91387051 - IAPLTR1a_Mm LTR ERVK 0 337 1 1 1051 1292 252 66 9 chr5 61150251 61150583 -91386676 + MTD LTR MaLR 1 351 -68 1 1051 3684 113 7 3 chr5 61150583 61151178 -91386081 - MusHAL1 LINE L1 -1188 1524 928 1 1051 2855 116 7 5 chr5 61151176 61151608 -91385651 + L1_Mus3 LINE L1 6171 6603 -35 1 1051 381 45 44 15 chr5 61151617 61151685 -91385574 + (TAAA)n Simple_repeat Simple_repeat 1 70 0 1 1051 1012 68 7 0 chr5 61152539 61152687 -91384572 - L1Md_F2 LINE L1 -1 6581 6433 1 1051 249 269 0 0 chr5 61154251 61154303 -91382956 + B4 SINE B4 10 61 -231 1 1051 419 264 9 0 chr5 61154330 61154440 -91382819 - RMER1C Other Other -1152 190 80 1 1051 234 0 0 0 chr5 61154584 61154610 -91382649 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1051 835 102 150 0 chr5 61154610 61154737 -91382522 - B1_Mm SINE Alu 0 147 2 1 1051 756 306 24 0 chr5 61155014 61155223 -91382036 - B3 SINE B2 0 216 3 1 1051 593 240 194 6 chr5 61155367 61155547 -91381712 - B3 SINE B2 -1 215 2 1 1051 300 27 0 0 chr5 61155928 61155965 -91381294 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1051 690 13 0 0 chr5 61156723 61156802 -91380457 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 1051 1703 277 135 19 chr5 61157674 61158311 -91378948 - Lx7 LINE L1 -10 7450 6740 1 1051 872 156 15 18 chr5 61158323 61158722 -91378537 + CT-rich Low_complexity Low_complexity 1 398 0 1 1051 2027 265 121 31 chr5 61158747 61160305 -91376954 - Lx7 LINE L1 -953 6743 5036 1 1051 3065 74 5 19 chr5 61160305 61160732 -91376527 - BGLII LTR ERVK 0 421 1 1 1051 1763 182 19 17 chr5 61160732 61160917 -91376342 - Lx7 LINE L1 -845 5035 4854 1 1051 285 128 0 0 chr5 61161559 61161606 -91375653 + (TCC)n Simple_repeat Simple_repeat 3 49 0 1 1051 888 270 143 72 chr5 61161739 61162179 -91375080 + Lx9 LINE L1 7035 7456 -188 1 1051 579 96 0 0 chr5 61162179 61162262 -91374997 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 1051 888 270 143 72 chr5 61162262 61162388 -91374871 + Lx9 LINE L1 7457 7641 -3 1 1051 4377 110 5 112 chr5 61162772 61163632 -91373627 + Lx3_Mus LINE L1 5017 5784 -102 2 1051 2978 82 33 0 chr5 61163620 61164048 -91373211 + L1Md_F2 LINE L1 4805 5246 -637 2 1051 738 82 0 0 chr5 61164044 61164142 -91373117 + L1Md_F2 LINE L1 5489 5586 -297 2 1051 7310 70 18 10 chr5 61164143 61165090 -91372169 + L1Md_F2 LINE L1 5588 6537 -45 2 1051 3537 20 0 0 chr5 61165090 61165486 -91371773 + MTA_Mm LTR MaLR 1 396 0 2 1051 7310 70 18 10 chr5 61165486 61165525 -91371734 + L1Md_F2 LINE L1 6538 6582 0 2 1051 7739 104 34 18 chr5 61165523 61165650 -91371609 + Lx3_Mus LINE L1 5783 5909 -1100 2 1051 251 28 28 0 chr5 61165650 61165686 -91371573 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1051 7739 104 34 18 chr5 61165686 61166756 -91370503 + Lx3_Mus LINE L1 5910 6998 -11 2 1051 3951 186 21 29 chr5 61166841 61167488 -91369771 + L1_Mur2 LINE L1 560 1219 -5867 2 1051 1491 38 27 0 chr5 61167488 61167673 -91369586 + B2_Mm1a SINE B2 2 191 -2 2 1051 3951 172 5 1 chr5 61167673 61167899 -91369360 + L1_Mur2 LINE L1 1207 1428 -4449 2 1051 414 186 0 0 chr5 61167899 61167985 -91369274 + Lx4A LINE L1 6961 7046 -12 2 1051 298 61 0 39 chr5 61167992 61168043 -91369216 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 2 1051 217 132 0 0 chr5 61168086 61168124 -91369135 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 2 1051 207 0 0 0 chr5 61168253 61168276 -91368983 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 1051 2972 32 0 0 chr5 61170012 61170358 -91366901 - ORR1A0 LTR MaLR 0 346 1 2 1051 13016 55 16 18 chr5 61170358 61171126 -91366133 - ORR1A0-int LTR MaLR 0 1792 1028 2 1051 2998 63 25 112 chr5 61171126 61171646 -91365613 - IAPLTR2_Mm LTR ERVK 0 475 1 2 1051 13016 55 16 18 chr5 61171646 61172673 -91364586 - ORR1A0-int LTR MaLR -765 1027 1 2 1051 2912 35 3 0 chr5 61172673 61173018 -91364241 - ORR1A0 LTR MaLR 0 346 1 2 1051 25 31 0 0 chr5 61174911 61174943 -91362316 + AT_rich Low_complexity Low_complexity 1 32 0 2 1051 227 235 19 58 chr5 61174943 61175047 -91362212 - L1_Mus3 LINE L1 0 6638 6539 2 1051 1955 240 41 4 chr5 61175058 61175547 -91361712 - Lx4B LINE L1 -605 6453 5947 2 1051 23 33 0 0 chr5 61175913 61175943 -91361316 + AT_rich Low_complexity Low_complexity 1 30 0 2 1051 411 21 0 0 chr5 61175994 61176042 -91361217 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1051 2007 267 20 8 chr5 61176428 61176923 -91360336 + Lx6 LINE L1 6956 7456 -4 2 1051 3896 33 0 0 chr5 61176961 61177421 -91359838 - L1Md_T LINE L1 -1 6581 6122 2 1051 14853 25 29 1 chr5 61177421 61179417 -91357842 + L1Md_F3 LINE L1 4098 6131 -453 2 1051 961 335 20 30 chr5 61179422 61180157 -91357102 + L1MC LINE L1 4582 5309 -837 2 1051 240 86 0 0 chr5 61180573 61180608 -91356651 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1051 453 328 29 23 chr5 61181261 61181436 -91355823 - B3A SINE B2 -16 182 7 2 1051 21 0 0 0 chr5 61182027 61182048 -91355211 + AT_rich Low_complexity Low_complexity 1 21 0 2 1051 2701 121 18 0 chr5 61182219 61182655 -91354604 - Lx2 LINE L1 -1001 5996 5534 2 1051 1949 151 17 6 chr5 61182655 61183001 -91354258 + Lx2 LINE L1 6021 6370 -627 2 1051 210 171 24 0 chr5 61183599 61183640 -91353619 + (CCAA)n Simple_repeat Simple_repeat 3 44 0 2 1051 363 348 90 0 chr5 61184128 61184283 -91352976 + ID_B1 SINE B4 3 171 -53 2 1051 24 53 0 0 chr5 61184457 61184495 -91352764 + AT_rich Low_complexity Low_complexity 1 38 0 2 1051 2095 121 82 30 chr5 61184886 61185253 -91352006 + Lx2 LINE L1 6608 6993 -4 2 1051 1341 37 0 0 chr5 61185266 61185429 -91351830 + (GGAAA)n Simple_repeat Simple_repeat 3 165 0 2 1051 426 20 0 0 chr5 61186088 61186139 -91351120 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1051 283 141 31 0 chr5 61186156 61186220 -91351039 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1051 316 285 99 53 chr5 61186225 61186377 -91350882 - L1MC1 LINE L1 -90 6243 6085 2 1051 419 256 87 35 chr5 61186536 61186767 -91350492 - L1MC1 LINE L1 -464 5869 5627 2 1051 561 271 0 0 chr5 61186794 61186971 -91350288 + T-rich Low_complexity Low_complexity 1 177 0 2 1051 220 159 29 100 chr5 61186973 61187043 -91350216 + CT-rich Low_complexity Low_complexity 3 67 0 2 1051 299 336 36 18 chr5 61187229 61187341 -91349918 - PB1D7 SINE Alu -6 114 1 2 1051 295 272 101 31 chr5 61187504 61187633 -91349626 - L1MC1 LINE L1 -955 5191 5054 2 1051 884 208 172 0 chr5 61187638 61187830 -91349429 - URR1B DNA MER1_type 0 225 1 2 1051 2183 127 141 37 chr5 61188181 61188663 -91348596 - RLTR47_MM LTR ERV1 0 532 1 2 1051 276 349 0 0 chr5 61189694 61189760 -91347499 + tRNA-Ala-GCA tRNA tRNA 1 66 -9 2 1051 233 260 20 0 chr5 61190336 61190386 -91346873 - L2c LINE L2 -230 3157 3107 2 1051 2436 134 55 0 chr5 61190653 61191056 -91346203 + Lx2 LINE L1 6573 6997 0 2 1051 609 136 0 0 chr5 61191224 61191327 -91345932 + (TA)n Simple_repeat Simple_repeat 1 103 0 2 1051 623 356 13 56 chr5 61191369 61191675 -91345584 + ORR1E LTR MaLR 67 359 0 2 1051 21 0 0 0 chr5 61193286 61193307 -91343952 + AT_rich Low_complexity Low_complexity 1 21 0 2 1051 1133 213 89 37 chr5 61193496 61193767 -91343492 - L1_Mur3 LINE L1 -344 5536 5265 2 1051 767 40 10 0 chr5 61193767 61193866 -91343393 + (TTC)n Simple_repeat Simple_repeat 1 100 0 2 1051 1133 213 89 37 chr5 61193866 61193920 -91343339 - L1_Mur3 LINE L1 -616 5264 5194 2 1051 285 335 73 67 chr5 61194003 61194182 -91343077 + B4 SINE B4 5 184 -108 2 1051 207 0 0 0 chr5 61194196 61194219 -91343040 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1051 1129 62 7 0 chr5 61194223 61194369 -91342890 - B1_Mm SINE Alu 0 147 1 2 1051 309 383 0 9 chr5 61194369 61194485 -91342774 + B4A SINE B4 176 290 -2 2 1051 312 27 0 0 chr5 61194553 61194590 -91342669 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 1051 3001 6 5 88 chr5 61194877 61195277 -91341982 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1051 29016 17 1 1 chr5 61195277 61198551 -91338708 - IAPEz-int LTR ERVK 0 6481 3210 2 1051 8511 78 53 23 chr5 61198550 61199877 -91337382 - IAPEz-int LTR ERVK -5168 1313 3 2 1051 3001 6 5 88 chr5 61199879 61200279 -91336980 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1051 216 0 0 0 chr5 61200489 61200513 -91336746 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2 1051 2995 168 6 4 chr5 61200526 61201027 -91336232 - Lx3B LINE L1 -4 6969 6468 2 1051 4399 120 79 8 chr5 61201031 61201738 -91335521 - Lx3B LINE L1 -630 6343 5587 2 1051 838 281 87 61 chr5 61201916 61202229 -91335030 + ORR1E LTR MaLR 1 321 -38 2 1051 1453 78 0 10 chr5 61202229 61202423 -91334836 - B2_Mm1t SINE B2 -1 192 1 2 1051 838 281 87 61 chr5 61202423 61202454 -91334805 + ORR1E LTR MaLR 322 354 -5 2 1051 324 229 0 28 chr5 61202461 61202533 -91334726 - MTE2b LTR MaLR -309 70 1 2 1051 1066 161 114 18 chr5 61202571 61202780 -91334479 - RMER6C LTR ERVK 0 690 460 2 1051 2140 214 28 87 chr5 61202780 61203321 -91333938 + MT2B LTR ERVL 3 511 -90 2 1051 1775 247 35 29 chr5 61203323 61203807 -91333452 + RLTR19C LTR ERVK 20 506 0 2 1051 359 226 86 0 chr5 61203807 61203900 -91333359 + MT2B LTR ERVL 501 601 0 2 1051 1070 228 17 65 chr5 61203901 61204303 -91332956 - RMER6C LTR ERVK -228 462 3 2 1051 229 356 72 40 chr5 61204364 61204516 -91332743 + MLT1A LTR MaLR 206 362 -12 2 1051 530 356 117 35 chr5 61205568 61205885 -91331374 - MLT1A0 LTR MaLR 0 365 23 2 1051 218 56 0 27 chr5 61206598 61206635 -91330624 + (TTA)n Simple_repeat Simple_repeat 1 36 0 2 1051 4025 29 6 0 chr5 61206635 61207112 -91330147 - L1Md_F3 LINE L1 -26 6558 6079 2 1051 317 43 21 0 chr5 61207462 61207509 -91329750 + (TAG)n Simple_repeat Simple_repeat 1 48 0 2 1051 1130 64 0 0 chr5 61208574 61208715 -91328544 - B1_Mus1 SINE Alu -6 142 2 2 1051 259 348 35 21 chr5 61209146 61209287 -91327972 - MLT1A LTR MaLR -11 363 212 2 1051 5552 36 2 1 chr5 61209392 61210062 -91327197 + L1Md_F2 LINE L1 5731 6382 -200 2 1052 274 21 0 21 chr5 61210624 61210672 -91326587 - Lx3_Mus LINE L1 -936 6073 6027 2 1052 2251 117 2 94 chr5 61210686 61211081 -91326178 - RLTR10D LTR ERVK 0 359 1 2 1052 4449 145 105 12 chr5 61211081 61211911 -91325348 + Lx3_Mus LINE L1 6091 7001 -8 2 1052 459 45 0 0 chr5 61212708 61212774 -91324485 + L1Md_F2 LINE L1 6515 6580 -2 2 1052 26 30 0 0 chr5 61212794 61212827 -91324432 + AT_rich Low_complexity Low_complexity 1 33 0 2 1052 24 32 0 0 chr5 61212841 61212872 -91324387 + AT_rich Low_complexity Low_complexity 1 31 0 2 1052 27 73 0 0 chr5 61213917 61213972 -91323287 + AT_rich Low_complexity Low_complexity 1 55 0 2 1052 264 273 43 74 chr5 61214833 61214995 -91322264 - L1MDb LINE L1 -4355 2278 2122 2 1052 190 95 23 23 chr5 61215207 61215250 -91322009 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 2 1052 3604 101 33 42 chr5 61215263 61215842 -91321417 - L1_Mus2 LINE L1 -3 6563 5990 2 1052 225 0 0 0 chr5 61216291 61216316 -91320943 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 2 1052 233 222 56 0 chr5 61216443 61216497 -91320762 - MTE2a LTR MaLR -322 57 1 2 1052 287 234 120 58 chr5 61216887 61217145 -91320114 - L1MDb LINE L1 -5231 1309 1036 2 1052 969 331 41 15 chr5 61217525 61217868 -91319391 + MTE2b LTR MaLR 23 374 -5 2 1052 3480 161 14 14 chr5 61218357 61218466 -91318793 - Lx3C LINE L1 -7 6969 6859 2 1052 360 0 0 0 chr5 61218466 61218506 -91318753 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1052 3480 161 14 14 chr5 61218506 61219018 -91318241 - Lx3C LINE L1 -118 6858 6348 2 1052 3773 143 18 0 chr5 61219048 61219655 -91317604 - Lx LINE L1 0 6654 6037 2 1052 3100 143 20 0 chr5 61219668 61220200 -91317059 + L1_Mus3 LINE L1 5316 5859 -779 2 1052 1256 130 10 5 chr5 61220164 61220365 -91316894 - Lx3C LINE L1 -621 6355 6154 2 1052 225 359 59 29 chr5 61220736 61220860 -91316399 - B1F SINE Alu -5 144 17 2 1052 1233 207 21 50 chr5 61220920 61221072 -91316187 + RMER12 LTR ERVK 1 152 -1170 2 1052 1765 174 87 163 chr5 61221072 61221649 -91315610 - RMER16 LTR ERVK 0 533 1 2 1052 1233 207 21 50 chr5 61221649 61221776 -91315483 + RMER12 LTR ERVK 153 272 -1050 2 1052 917 189 173 44 chr5 61221771 61221917 -91315342 + RMER12 LTR ERVK 601 770 -552 2 1052 507 45 0 0 chr5 61221917 61221983 -91315276 + (TCCA)n Simple_repeat Simple_repeat 2 67 0 2 1052 917 189 173 44 chr5 61221983 61222085 -91315174 + RMER12 LTR ERVK 771 880 -442 2 1052 2475 186 84 29 chr5 61222265 61222989 -91314270 + RLTR25A LTR ERVK 13 885 -218 2 1052 201 147 0 0 chr5 61223433 61223467 -91313792 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2 1052 568 143 36 0 chr5 61223612 61223724 -91313535 - Lx LINE L1 -2 6652 6537 2 1052 617 242 93 73 chr5 61223976 61224094 -91313165 + RLTR25A LTR ERVK 832 941 -162 2 1052 755 45 14 36 chr5 61224094 61224232 -91313027 + (CA)n Simple_repeat Simple_repeat 2 136 0 2 1052 617 242 93 73 chr5 61224232 61224372 -91312887 + RLTR25A LTR ERVK 942 1095 -8 2 1052 761 262 30 15 chr5 61224370 61224568 -91312691 + RMER12 LTR ERVK 901 1101 -221 2 1052 3320 252 39 57 chr5 61224569 61225505 -91311754 - Lx5 LINE L1 -35 7015 6097 2 1052 288 77 0 0 chr5 61225695 61225734 -91311525 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 1052 2204 193 128 6 chr5 61225802 61225869 -91311390 - RMER6C LTR ERVK 0 690 622 2 1052 2396 52 3 3 chr5 61225869 61226176 -91311083 - L1Md_F3 LINE L1 -2 6582 6276 2 1052 2204 195 126 5 chr5 61226176 61226690 -91310569 - RMER6C LTR ERVK -69 621 1 2 1052 450 0 0 0 chr5 61226746 61226796 -91310463 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 2 1052 207 167 0 0 chr5 61226797 61226833 -91310426 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1052 425 50 0 16 chr5 61226833 61226894 -91310365 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1052 1181 299 50 6 chr5 61226895 61227258 -91310001 - Lx6 LINE L1 -170 7290 6912 3 1052 629 206 59 0 chr5 61227278 61227414 -91309845 + Lx6 LINE L1 6486 6629 -831 3 1052 180 0 0 0 chr5 61227433 61227453 -91309806 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 1052 354 226 74 21 chr5 61227463 61227558 -91309701 + Lx6 LINE L1 6746 6845 -615 3 1052 423 262 59 19 chr5 61227559 61227844 -91309415 - L1MC LINE L1 -2310 5475 5186 3 1052 679 316 146 3 chr5 61228206 61228508 -91308751 + MTD LTR MaLR 22 366 -53 3 1052 22 35 0 0 chr5 61228613 61228642 -91308617 + AT_rich Low_complexity Low_complexity 1 29 0 3 1052 460 130 0 17 chr5 61229154 61229271 -91307988 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 3 1052 250 296 0 17 chr5 61229279 61229396 -91307863 + (TA)n Simple_repeat Simple_repeat 1 115 0 3 1052 222 212 0 0 chr5 61229453 61229464 -91307795 + (TA)n Simple_repeat Simple_repeat 1 11 0 3 1052 354 23 0 0 chr5 61229464 61229507 -91307752 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1052 222 212 0 0 chr5 61229507 61229561 -91307698 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 1052 180 0 0 0 chr5 61230205 61230225 -91307034 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 1052 318 346 17 26 chr5 61230393 61230627 -91306632 + Lx8 LINE L1 6080 6311 -1162 3 1052 1015 7 42 21 chr5 61232613 61232755 -91304504 - L1Md_F3 LINE L1 0 6584 6440 3 1052 1792 78 0 16 chr5 61232932 61233180 -91304079 + L1_Mus1 LINE L1 6323 6566 -1 3 1052 2807 52 3 0 chr5 61233660 61234005 -91303254 + ORR1A1 LTR MaLR 1 346 0 3 1052 414 0 0 0 chr5 61234912 61234958 -91302301 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1052 417 322 35 0 chr5 61234970 61235113 -91302146 - B3A SINE B2 -46 152 5 3 1052 21 0 0 0 chr5 61235211 61235232 -91302027 + AT_rich Low_complexity Low_complexity 1 21 0 3 1052 636 14 0 0 chr5 61235427 61235500 -91301759 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 1052 21 82 0 0 chr5 61236015 61236064 -91301195 + AT_rich Low_complexity Low_complexity 1 49 0 3 1052 202 51 0 71 chr5 61236718 61236760 -91300499 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1052 382 345 48 24 chr5 61236781 61236951 -91300308 + Lx5 LINE L1 6823 6973 -77 3 1052 13488 103 47 20 chr5 61237528 61238459 -91298800 + L1_Mur1 LINE L1 2701 3660 -2226 3 1052 315 0 0 0 chr5 61238459 61238494 -91298765 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1052 13488 103 47 20 chr5 61238494 61238505 -91298754 + L1_Mur1 LINE L1 3661 3669 -2217 3 1052 183 42 0 0 chr5 61238505 61238529 -91298730 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1052 13488 103 47 20 chr5 61238529 61239358 -91297901 + L1_Mur1 LINE L1 3670 4544 -1342 3 1052 504 0 0 0 chr5 61239358 61239414 -91297845 + (CCCTAA)n Simple_repeat Simple_repeat 2 57 0 3 1052 13488 103 47 20 chr5 61239414 61239533 -91297726 + L1_Mur1 LINE L1 4545 4660 -1226 3 1052 3054 124 72 15 chr5 61239533 61239997 -91297262 - L1_Mus3 LINE L1 0 6638 6144 3 1052 2749 34 0 44 chr5 61239997 61240339 -91296920 - IAPLTR2b LTR ERVK 0 327 1 3 1052 3054 124 72 15 chr5 61240339 61240398 -91296861 - L1_Mus3 LINE L1 -495 6143 6085 3 1052 13488 103 47 20 chr5 61240398 61240670 -91296589 + L1_Mur1 LINE L1 4661 4913 -973 3 1052 4329 48 33 6 chr5 61240670 61241220 -91296039 + L1Md_F2 LINE L1 6018 6582 0 3 1052 13488 103 47 20 chr5 61241220 61241279 -91295980 + L1_Mur1 LINE L1 4914 4987 -899 3 1052 3632 98 126 34 chr5 61241317 61241712 -91295547 - RMER17A LTR ERVK -14 737 310 3 1052 974 57 0 54 chr5 61241712 61241898 -91295361 + (GGAGA)n Simple_repeat Simple_repeat 2 177 0 3 1052 3632 98 126 34 chr5 61241898 61242177 -91295082 - RMER17A LTR ERVK -442 309 2 3 1052 989 106 13 0 chr5 61242177 61242328 -91294931 + L1_Mur1 LINE L1 4982 5134 -752 3 1052 589 244 216 4 chr5 61242410 61242648 -91294611 - Lx5 LINE L1 -559 6901 6455 3 1052 588 14 0 0 chr5 61242649 61242718 -91294541 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1052 233 257 40 26 chr5 61242718 61242794 -91294465 + Lx6 LINE L1 7136 7212 -248 3 1052 4057 177 39 26 chr5 61242827 61243657 -91293602 - Lx2B LINE L1 -2 6998 6159 3 1052 1122 58 0 0 chr5 61243687 61243825 -91293434 - B1_Mus1 SINE Alu -9 139 2 3 1052 445 350 32 46 chr5 61243851 61244067 -91293192 + MTEa LTR MaLR 121 333 -46 3 1052 279 286 0 0 chr5 61244053 61244130 -91293129 - MER2 DNA MER2_type -140 205 129 3 1052 408 307 57 16 chr5 61244229 61244421 -91292838 + MER67C LTR ERV1 511 710 -1 3 1052 373 338 24 78 chr5 61246250 61246275 -91290984 + RSINE1 SINE B4 2 25 -140 3 1052 4301 22 0 12 chr5 61246275 61246774 -91290485 - MT2_Mm LTR ERVL 0 493 1 3 1052 373 338 24 78 chr5 61246774 61246915 -91290344 + RSINE1 SINE B4 26 159 -6 3 1052 450 119 0 0 chr5 61246946 61247030 -91290229 + (CA)n Simple_repeat Simple_repeat 2 85 0 3 1052 3423 58 9 0 chr5 61248238 61248688 -91288571 + L1_Mm LINE L1 3981 4434 -1449 3 1052 328 308 22 65 chr5 61248763 61249076 -91288183 + L1MA6 LINE L1 5928 6215 -85 3 1052 1223 40 22 11 chr5 61249456 61249634 -91287625 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1052 1092 60 0 0 chr5 61249635 61249769 -91287490 - B1_Mm SINE Alu -13 134 1 3 1052 6522 210 28 10 chr5 61250158 61251779 -91285480 - Lx4B LINE L1 -6 7052 5386 3 1052 1478 6 0 0 chr5 61251925 61252097 -91285162 - L1Md_A LINE L1 0 6582 6411 3 1052 508 311 116 12 chr5 61254367 61254478 -91282781 - Lx7 LINE L1 -831 6865 6746 3 1052 483 63 0 0 chr5 61254478 61254541 -91282718 + (TAA)n Simple_repeat Simple_repeat 3 65 0 3 1052 508 311 116 12 chr5 61254541 61254680 -91282579 - Lx7 LINE L1 -951 6745 6589 3 1052 252 0 0 0 chr5 61254681 61254709 -91282550 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1052 3161 115 38 2 chr5 61254731 61255229 -91282030 + L1_Mus4 LINE L1 6120 6635 -1 3 1052 371 343 85 36 chr5 61255260 61255508 -91281751 - Lx6 LINE L1 -865 6595 6336 3 1052 2414 211 33 39 chr5 61255776 61256128 -91281131 + RMER6D LTR ERVK 1 365 -355 3 1052 426 20 0 0 chr5 61256128 61256179 -91281080 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1052 2414 211 33 39 chr5 61256179 61256366 -91280893 + RMER6D LTR ERVK 366 537 -183 3 1052 2114 212 37 55 chr5 61256366 61256782 -91280477 + RLTR16 LTR ERVK 2 401 -104 3 1052 993 41 0 0 chr5 61256782 61256904 -91280355 + (TC)n Simple_repeat Simple_repeat 2 123 0 3 1052 536 29 14 0 chr5 61256904 61256973 -91280286 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1052 2114 258 66 20 chr5 61256973 61257226 -91280033 + RLTR16 LTR ERVK 402 703 -17 3 1052 30 59 0 0 chr5 61257265 61257316 -91279943 + AT_rich Low_complexity Low_complexity 1 51 0 3 1052 378 354 40 35 chr5 61257797 61257819 -91279440 - B3 SINE B2 -11 205 184 3 1052 317 0 70 0 chr5 61257819 61257862 -91279397 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 3 1052 378 354 40 35 chr5 61257862 61258038 -91279221 - B3 SINE B2 -33 183 7 3 1052 202 271 58 12 chr5 61258964 61259050 -91278209 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 3 1052 404 154 38 75 chr5 61259050 61259183 -91278076 - Lx9 LINE L1 -127 7517 7390 3 1052 227 174 65 0 chr5 61261409 61261455 -91275804 - MER67D LTR ERV1 -153 361 313 3 1052 3233 141 13 2 chr5 61262295 61262820 -91274439 - L1_Mus4 LINE L1 0 6636 6106 3 1052 1124 106 47 0 chr5 61262826 61262996 -91274263 - L1_Mus4 LINE L1 -624 6012 5835 3 1052 3451 123 0 0 chr5 61263020 61263523 -91273736 + L1_Mm LINE L1 5327 5829 -54 3 1052 238 322 101 87 chr5 61263527 61263745 -91273514 + RMER5 LTR ERV1 238 458 -76 3 1052 505 331 34 58 chr5 61263767 61264098 -91273161 - ORR1D2 LTR MaLR 0 370 2 3 1052 21 71 0 0 chr5 61264813 61264855 -91272404 + AT_rich Low_complexity Low_complexity 1 42 0 3 1052 11158 107 27 14 chr5 61265523 61266037 -91271222 + Lx3A LINE L1 4107 4644 -1242 3 1052 270 0 0 0 chr5 61266037 61266067 -91271192 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1052 11158 123 27 9 chr5 61266067 61268333 -91268926 + Lx3A LINE L1 4645 6925 -56 3 1052 547 235 138 48 chr5 61268334 61268522 -91268737 + RMER6D LTR ERVK 516 720 0 3 1052 24 53 0 0 chr5 61268570 61268608 -91268651 + AT_rich Low_complexity Low_complexity 1 38 0 3 1052 383 178 0 22 chr5 61268801 61268863 -91268396 + polypurine Low_complexity Low_complexity 2 63 0 3 1052 1119 129 0 0 chr5 61268863 61269041 -91268218 + (GGGA)n Simple_repeat Simple_repeat 1 178 0 3 1052 383 178 0 22 chr5 61269041 61269070 -91268189 + polypurine Low_complexity Low_complexity 64 91 0 3 1052 23 86 0 0 chr5 61269308 61269366 -91267893 + AT_rich Low_complexity Low_complexity 1 58 0 3 1052 474 345 55 5 chr5 61269826 61270027 -91267232 - B3 SINE B2 -5 211 1 3 1052 483 336 8 0 chr5 61270087 61270212 -91267047 - RSINE1 SINE B4 -23 142 17 3 1052 198 0 0 0 chr5 61270248 61270270 -91266989 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1052 2778 198 93 5 chr5 61270294 61270927 -91266332 - Lx3C LINE L1 -2 6974 6286 3 1052 333 0 0 0 chr5 61271032 61271069 -91266190 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 3 1052 1043 108 13 0 chr5 61271069 61271227 -91266032 - B2_Mm1a SINE B2 -33 160 1 3 1052 33 25 0 0 chr5 61271319 61271359 -91265900 + AT_rich Low_complexity Low_complexity 1 40 0 3 1052 3802 246 24 7 chr5 61272609 61273528 -91263731 - Lx5 LINE L1 -4 7054 6063 3 1052 4315 178 57 13 chr5 61273528 61274392 -91262867 - RLTR13D6 LTR ERVK 0 902 1 3 1052 22 0 0 0 chr5 61274546 61274568 -91262691 + AT_rich Low_complexity Low_complexity 1 22 0 3 1052 21 0 0 0 chr5 61275601 61275622 -91261637 + AT_rich Low_complexity Low_complexity 1 21 0 3 1052 558 375 57 42 chr5 61276369 61276723 -91260536 + ORR1E LTR MaLR 1 359 0 3 1052 27 73 0 0 chr5 61276770 61276825 -91260434 + AT_rich Low_complexity Low_complexity 1 55 0 3 1052 25 51 0 0 chr5 61276965 61277004 -91260255 + AT_rich Low_complexity Low_complexity 1 39 0 3 1052 186 192 0 0 chr5 61277059 61277111 -91260148 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 3 1052 1288 235 62 3 chr5 61277156 61277446 -91259813 + MTC LTR MaLR 115 421 0 3 1052 207 0 0 0 chr5 61277655 61277678 -91259581 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1052 24 0 0 0 chr5 61278855 61278879 -91258380 + AT_rich Low_complexity Low_complexity 1 24 0 3 1052 3547 61 2 4 chr5 61278881 61279343 -91257916 - L1Md_F2 LINE L1 -1 6581 6121 3 1052 8039 41 1 22 chr5 61279343 61280548 -91256711 + L1Md_F2 LINE L1 4892 6071 -511 3 1052 215 246 123 0 chr5 61281606 61281663 -91255596 + B3A SINE B2 3 66 -132 3 1052 1235 106 0 0 chr5 61282782 61282961 -91254298 + L1_Mus1 LINE L1 6389 6567 0 3 1052 460 352 6 22 chr5 61283511 61283694 -91253565 + MTE-int LTR MaLR 4 183 -1397 3 1052 1178 51 26 0 chr5 61284620 61284776 -91252483 - L1Md_F2 LINE L1 -16 6566 6407 3 1052 309 261 43 21 chr5 61284778 61284872 -91252387 - L1M4c LINE L1 -6277 107 12 4 1052 249 295 13 0 chr5 61285332 61285410 -91251849 + ORR1D2 LTR MaLR 272 350 -20 4 1052 30022 109 10 3 chr5 61285733 61292034 -91245225 - L1_Mus2 LINE L1 0 6566 219 4 1052 26 30 0 0 chr5 61292041 61292074 -91245185 + AT_rich Low_complexity Low_complexity 1 33 0 4 1052 25120 88 11 20 chr5 61293893 61297273 -91239986 + L1_Mm LINE L1 2182 5587 -296 4 1052 7372 75 3 18 chr5 61297273 61298272 -91238987 + L1Md_F2 LINE L1 5588 6571 -11 4 1052 25120 88 11 20 chr5 61298272 61298539 -91238720 + L1_Mm LINE L1 5588 5796 -87 4 1052 1888 161 8 26 chr5 61298557 61298908 -91238351 - Lx3A LINE L1 -6 6975 6631 4 1052 1663 164 0 14 chr5 61298908 61299204 -91238055 - L1_Mur2 LINE L1 -2075 3802 3511 4 1052 3909 180 30 34 chr5 61299196 61299786 -91237473 - L1_Mur2 LINE L1 -3247 2630 2050 4 1052 378 0 0 0 chr5 61299786 61299828 -91237431 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1052 3909 180 30 34 chr5 61299828 61300113 -91237146 - L1_Mur2 LINE L1 -3828 2049 1759 4 1052 25 31 0 0 chr5 61300334 61300366 -91236893 + AT_rich Low_complexity Low_complexity 1 32 0 4 1052 37 39 0 0 chr5 61300402 61300453 -91236806 + AT_rich Low_complexity Low_complexity 1 51 0 4 1052 513 58 0 0 chr5 61300564 61300633 -91236626 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1052 331 378 31 5 chr5 61300734 61300984 -91236275 - Lx8 LINE L1 -297 7347 6971 4 1052 466 272 72 27 chr5 61301087 61301444 -91235815 - L1_Mur3 LINE L1 -2433 3414 3052 4 1052 691 328 37 29 chr5 61301601 61301874 -91235385 + B4 SINE B4 15 289 -3 4 1052 22 0 0 0 chr5 61303134 61303156 -91234103 + AT_rich Low_complexity Low_complexity 1 22 0 4 1052 556 238 58 18 chr5 61303205 61303376 -91233883 - MT2A LTR ERVL 0 533 356 4 1052 907 264 4 73 chr5 61303385 61303618 -91233641 - Lx5 LINE L1 -164 6886 6670 4 1052 1006 52 0 0 chr5 61303644 61303778 -91233481 - B1_Mus1 SINE Alu 0 148 15 4 1052 339 192 95 103 chr5 61303679 61303795 -91233464 - MT2A LTR ERVL -337 264 150 4 1052 654 181 62 8 chr5 61303799 61303927 -91233332 - Lx4B LINE L1 -407 6651 6517 4 1052 214 159 32 54 chr5 61305179 61305272 -91231987 + (TATAA)n Simple_repeat Simple_repeat 1 91 0 4 1052 21 0 0 0 chr5 61305762 61305783 -91231476 + AT_rich Low_complexity Low_complexity 1 21 0 4 1052 2156 148 3 13 chr5 61305791 61306174 -91231085 - Lx3A LINE L1 -7 6974 6596 4 1052 241 300 33 22 chr5 61307014 61307106 -91230153 - MLT1A1 LTR MaLR -310 98 6 4 1052 261 83 0 0 chr5 61307485 61307521 -91229738 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4 1052 608 319 29 25 chr5 61307841 61308118 -91229141 - Lx7 LINE L1 -1242 6454 6177 4 1052 35543 65 16 1 chr5 61308131 61314315 -91222944 - L1Md_F2 LINE L1 -2 6580 301 4 1052 233 303 0 0 chr5 61314341 61314407 -91222852 - Lx7 LINE L1 -1539 6157 6092 4 1052 1110 234 179 9 chr5 61314479 61314815 -91222444 - ORR1B1 LTR MaLR -1 393 1 4 1052 23 0 0 0 chr5 61315824 61315847 -91221412 + AT_rich Low_complexity Low_complexity 1 23 0 4 1052 391 90 43 43 chr5 61318604 61318720 -91218539 + (TATAA)n Simple_repeat Simple_repeat 5 120 0 4 1052 478 367 47 58 chr5 61319372 61319820 -91217439 - Lx8 LINE L1 -197 7276 6834 4 1052 22 0 0 0 chr5 61319916 61319938 -91217321 + AT_rich Low_complexity Low_complexity 1 22 0 4 1052 391 147 0 0 chr5 61321039 61321114 -91216145 + L1_Mus3 LINE L1 6558 6632 -6 4 1052 7217 106 14 2 chr5 61321762 61322957 -91214302 + L1_Mus3 LINE L1 5423 6632 -6 4 1052 602 164 27 0 chr5 61323195 61323341 -91213918 + GA-rich Low_complexity Low_complexity 1 150 0 4 1052 24 53 0 0 chr5 61323445 61323483 -91213776 + AT_rich Low_complexity Low_complexity 1 38 0 4 1052 228 86 0 0 chr5 61323530 61323565 -91213694 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1052 215 363 0 21 chr5 61323568 61323661 -91213598 - RSINE1 SINE B4 -50 115 25 4 1052 6860 116 34 2 chr5 61324357 61325466 -91211793 + Lx LINE L1 5513 6650 -4 4 1052 228 111 0 0 chr5 61325472 61325508 -91211751 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1052 247 121 0 33 chr5 61325570 61325630 -91211629 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1052 192 40 0 0 chr5 61325714 61325739 -91211520 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 4 1052 445 265 92 40 chr5 61326156 61326246 -91211013 + Lx9 LINE L1 7216 7314 -330 4 1052 315 0 0 0 chr5 61326246 61326281 -91210978 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1052 445 265 92 40 chr5 61326281 61326418 -91210841 + Lx9 LINE L1 7315 7455 -189 4 1052 468 0 0 0 chr5 61326418 61326470 -91210789 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 4 1052 277 186 28 14 chr5 61326513 61326584 -91210675 + Lx9 LINE L1 7551 7622 -22 4 1052 263 291 24 37 chr5 61328106 61328188 -91209071 + PB1D10 SINE Alu 32 112 -5 4 1052 279 0 0 0 chr5 61329468 61329499 -91207760 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1052 645 160 21 0 chr5 61329640 61329784 -91207475 + CT-rich Low_complexity Low_complexity 2 148 0 4 1052 188 67 33 0 chr5 61329785 61329815 -91207444 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1052 789 345 30 0 chr5 61329821 61330085 -91207174 - B4A SINE B4 -10 282 11 4 1052 663 290 64 18 chr5 61330603 61330867 -91206392 - ORR1D1 LTR MaLR -63 296 1 4 1052 28 29 0 0 chr5 61331085 61331120 -91206139 + AT_rich Low_complexity Low_complexity 1 35 0 4 1052 265 274 23 45 chr5 61331935 61332023 -91205236 + PB1D9 SINE Alu 34 119 -1 4 1052 959 304 45 39 chr5 61332181 61332516 -91204743 - MTE2b LTR MaLR -40 339 3 4 1052 1405 204 55 136 chr5 61332783 61333139 -91204120 - RLTR23 LTR ERV1 -3 427 97 4 1052 210 37 0 0 chr5 61333139 61333166 -91204093 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1052 1405 204 55 136 chr5 61333166 61333264 -91203995 - RLTR23 LTR ERV1 -334 96 10 4 1052 285 336 9 18 chr5 61334410 61334519 -91202740 - MTEb LTR MaLR -13 366 259 4 1052 362 324 15 10 chr5 61334596 61334802 -91202457 - L1M2 LINE L1 -1327 4816 4610 4 1052 747 215 7 20 chr5 61334804 61334951 -91202308 + B1_Mus2 SINE Alu 2 146 -1 4 1052 234 134 14 29 chr5 61334951 61335020 -91202239 + (CAAA)n Simple_repeat Simple_repeat 1 68 0 4 1052 277 228 161 23 chr5 61335026 61335156 -91202103 - L1_Mur3 LINE L1 -1495 4385 4238 4 1052 2809 284 78 62 chr5 61335160 61336105 -91201154 + MTD-int LTR MaLR 31 1010 -248 4 1052 231 103 0 0 chr5 61336105 61336144 -91201115 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 4 1052 2809 284 78 62 chr5 61336144 61336396 -91200863 + MTD-int LTR MaLR 1011 1246 -12 4 1052 858 276 72 79 chr5 61336405 61336588 -91200671 + MTD LTR MaLR 1 194 -225 4 1052 4904 119 29 12 chr5 61336588 61337344 -91199915 + Lx2A1 LINE L1 6231 6999 -9 4 1052 858 276 72 79 chr5 61337344 61337478 -91199781 + MTD LTR MaLR 195 316 -103 4 1052 405 0 0 0 chr5 61337782 61337827 -91199432 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1052 496 346 82 15 chr5 61337834 61338101 -91199158 + Lx8 LINE L1 6840 7124 -349 4 1052 238 256 81 24 chr5 61338499 61338623 -91198636 - L1MA6 LINE L1 -55 6245 6115 4 1052 213 329 148 14 chr5 61338638 61338780 -91198479 - RSINE1 SINE B4 -4 161 1 4 1052 1579 122 0 12 chr5 61339287 61339545 -91197714 + L1_Mus4 LINE L1 6375 6629 -7 4 1052 468 35 0 0 chr5 61340840 61340898 -91196361 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1052 744 235 23 51 chr5 61341299 61341682 -91195577 + RMER3D-int LTR ERVK 163 854 -1988 4 1053 691 275 62 43 chr5 61341807 61342016 -91195243 + Lx8 LINE L1 7071 7283 -190 4 1053 712 322 85 23 chr5 61342516 61342869 -91194390 + RMER15 LTR ERVL 37 411 -164 4 1053 205 275 0 111 chr5 61343519 61343609 -91193650 - MIR SINE MIR -105 103 24 4 1053 4518 127 29 7 chr5 61343648 61344362 -91192897 - Lx LINE L1 -7 6647 5918 4 1053 228 333 48 0 chr5 61344559 61344643 -91192616 - RLTR25B LTR ERVK -940 88 1 4 1053 490 310 45 0 chr5 61344644 61344799 -91192460 + RMER15 LTR ERVL 411 572 -3 4 1053 252 0 0 0 chr5 61344846 61344874 -91192385 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 4 1053 317 117 17 0 chr5 61346582 61346642 -91190617 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1053 8697 128 27 77 chr5 61346864 61348596 -91188663 + Lx3C LINE L1 2676 4321 -1565 4 1053 2309 228 142 26 chr5 61348596 61349372 -91187887 - ORR1A3-int LTR MaLR -786 1177 312 4 1053 34918 72 6 4 chr5 61349372 61355554 -91181705 - L1Md_F2 LINE L1 -46 6539 250 4 1053 1560 126 27 8 chr5 61355564 61355821 -91181438 - ORR1A3-int LTR MaLR -1607 356 95 4 1053 7173 150 12 20 chr5 61355824 61357538 -91179721 + Lx3C LINE L1 4631 6329 -647 4 1053 390 42 0 0 chr5 61357597 61357645 -91179614 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1053 2887 186 5 16 chr5 61357681 61358232 -91179027 - Lx2 LINE L1 -215 6782 6238 4 1053 180 233 0 0 chr5 61358265 61358338 -91178921 + CT-rich Low_complexity Low_complexity 5 77 0 4 1053 670 360 75 26 chr5 61358679 61359067 -91178192 + Tigger7 DNA MER2_type 52 458 -2033 4 1053 291 341 66 62 chr5 61359072 61359313 -91177946 + Tigger7 DNA MER2_type 2235 2475 -16 4 1053 312 356 0 0 chr5 61360053 61360168 -91177091 - Lx8 LINE L1 -469 7004 6890 4 1053 324 363 43 29 chr5 61360171 61360381 -91176878 - Lx8 LINE L1 -932 6541 6329 4 1053 983 267 88 60 chr5 61361578 61361929 -91175330 - Lx6 LINE L1 -34 7426 7066 4 1053 1201 102 11 5 chr5 61363629 61363817 -91173442 + L1_Mus3 LINE L1 6432 6620 -18 4 1053 5682 106 44 0 chr5 61364050 61364906 -91172353 + L1_Mus4 LINE L1 5742 6635 -1 4 1053 186 143 0 0 chr5 61364960 61364995 -91172264 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 4 1053 1968 247 80 6 chr5 61365791 61366268 -91170991 - Lx5 LINE L1 -57 6993 6482 4 1053 988 221 11 0 chr5 61366267 61366457 -91170802 + Lx5 LINE L1 6288 6479 -571 4 1053 24 0 0 0 chr5 61366748 61366772 -91170487 + AT_rich Low_complexity Low_complexity 1 24 0 4 1053 817 325 81 6 chr5 61367352 61367696 -91169563 + MTE2b LTR MaLR 1 370 -9 4 1053 22 0 0 0 chr5 61367760 61367782 -91169477 + AT_rich Low_complexity Low_complexity 1 22 0 4 1053 242 232 56 28 chr5 61367837 61367908 -91169351 - Lx9 LINE L1 -241 7403 7331 4 1053 269 26 26 0 chr5 61369641 61369679 -91167580 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1053 3056 79 83 2 chr5 61369895 61370341 -91166918 - RLTR45 LTR ERVK 0 482 1 4 1053 2095 189 2 21 chr5 61370599 61371025 -91166234 + Lx LINE L1 6235 6652 -2 4 1053 945 127 53 0 chr5 61371238 61371388 -91165871 + B2_Mm2 SINE B2 4 161 -34 4 1053 234 0 0 0 chr5 61371388 61371414 -91165845 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 4 1053 822 262 5 0 chr5 61373163 61373373 -91163886 - Lx9 LINE L1 -251 7393 7183 5 1053 396 216 9 38 chr5 61373369 61373475 -91163784 + Lx9 LINE L1 7372 7474 -170 5 1053 283 366 20 0 chr5 61374057 61374158 -91163101 - B4 SINE B4 -174 118 16 5 1053 333 0 0 0 chr5 61374161 61374198 -91163061 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1053 12862 22 0 0 chr5 61374890 61376390 -91160869 + L1Md_T LINE L1 4087 5586 -297 5 1053 8424 34 0 0 chr5 61376390 61377386 -91159873 + L1Md_T LINE L1 5587 6582 0 5 1053 26 0 0 0 chr5 61378239 61378265 -91158994 + AT_rich Low_complexity Low_complexity 1 26 0 5 1053 27 62 0 0 chr5 61378286 61378334 -91158925 + AT_rich Low_complexity Low_complexity 1 48 0 5 1053 584 178 9 0 chr5 61378385 61378492 -91158767 - B1_Mur2 SINE Alu 0 149 42 5 1053 2717 31 0 3 chr5 61378986 61379309 -91157950 + RLTRETN_Mm LTR ERVK 1 322 0 5 1053 289 169 39 0 chr5 61380019 61380096 -91157163 + (CATA)n Simple_repeat Simple_repeat 4 83 0 5 1053 4829 159 71 30 chr5 61380108 61380343 -91156916 + Lx2 LINE L1 6020 6252 -745 5 1053 4737 149 22 62 chr5 61380343 61381282 -91155977 - RLTR13D6 LTR ERVK 0 902 1 5 1053 4829 159 71 30 chr5 61381282 61381985 -91155274 + Lx2 LINE L1 6253 6997 0 5 1053 4383 78 16 3 chr5 61382214 61382828 -91154431 + L1_Mus3 LINE L1 6010 6631 -7 5 1053 2342 234 21 8 chr5 61383842 61384362 -91152897 - Lx2B LINE L1 -10 6990 6464 5 1053 1175 177 12 28 chr5 61384355 61384605 -91152654 + Lx2B LINE L1 6217 6462 -538 5 1053 342 0 0 0 chr5 61384945 61384983 -91152276 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 1053 951 100 0 15 chr5 61384987 61385119 -91152140 - B1_Mus1 SINE Alu -14 134 5 5 1053 5387 109 29 46 chr5 61385907 61386826 -91150433 + RMER17A2 LTR ERVK 3 906 0 5 1053 23 68 0 0 chr5 61387509 61387553 -91149706 + AT_rich Low_complexity Low_complexity 1 44 0 5 1053 746 50 0 10 chr5 61389291 61389391 -91147868 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 5 1053 447 326 7 14 chr5 61389416 61389556 -91147703 - B1_Mur1 SINE Alu -9 140 2 5 1053 749 224 7 0 chr5 61389600 61389752 -91147507 + RMER6D LTR ERVK 2 154 -566 5 1053 2681 260 19 22 chr5 61389765 61390460 -91146799 - Lx5 LINE L1 -12 7038 6346 5 1053 1537 221 32 51 chr5 61390464 61390874 -91146385 + RMER6D LTR ERVK 166 567 -153 5 1053 355 264 0 11 chr5 61391152 61391244 -91146015 + B1_Mur2 SINE Alu 59 149 0 5 1053 31196 86 8 4 chr5 61391414 61396393 -91140866 + L1Md_F2 LINE L1 587 5586 -297 5 1053 7920 51 1 1 chr5 61396393 61397384 -91139875 + L1Md_F2 LINE L1 5587 6577 -5 5 1053 263 340 29 48 chr5 61397576 61397681 -91139578 + RSINE1 SINE B4 27 129 -36 5 1053 6078 117 78 1 chr5 61397741 61399045 -91138214 - L1_Mus3 LINE L1 0 6638 5242 5 1053 5216 138 1 0 chr5 61399044 61399871 -91137388 + L1_Mus3 LINE L1 4416 5243 -640 5 1053 4085 140 3 3 chr5 61400322 61400975 -91136284 - Lx LINE L1 -7 6647 5995 5 1053 204 267 0 0 chr5 61401040 61401100 -91136159 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1053 185 401 42 46 chr5 61402208 61402493 -91134766 - L2 LINE L2 -482 2937 2654 5 1053 327 49 0 0 chr5 61402582 61402623 -91134636 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1053 1100 351 73 29 chr5 61402820 61403575 -91133684 - Lx8 LINE L1 -123 7350 6563 5 1053 18923 15 0 0 chr5 61403612 61406555 -91130704 - L1Md_T LINE L1 0 6582 3677 5 1053 18767 59 0 0 chr5 61406545 61409001 -91128258 + L1Md_T LINE L1 1238 3693 -2190 5 1053 472 299 45 0 chr5 61409017 61409174 -91128085 - Lx8 LINE L1 -966 6507 6344 5 1053 1132 185 40 20 chr5 61409471 61409719 -91127540 - Lx5 LINE L1 -2 7056 6804 5 1053 3489 180 19 65 chr5 61410113 61410863 -91126396 - Lx3C LINE L1 -10 6966 6252 5 1053 1703 199 93 11 chr5 61410862 61411238 -91126021 + Lx3C LINE L1 5840 6246 -730 5 1053 1479 186 88 83 chr5 61411235 61411622 -91125637 - L1_Mur2 LINE L1 -6135 577 189 5 1053 378 348 59 7 chr5 61411789 61412061 -91125198 - Lx7 LINE L1 -1805 5891 5606 5 1053 15485 204 56 32 chr5 61412089 61412954 -91124305 - Lx5 LINE L1 -498 6552 5727 5 1053 1886 148 0 6 chr5 61412954 61413274 -91123985 - Lx2 LINE L1 0 6997 6680 5 1053 15485 189 45 48 chr5 61413274 61414191 -91123068 - Lx5 LINE L1 -139 5738 4816 5 1053 324 0 0 0 chr5 61414191 61414227 -91123032 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1053 15485 189 45 48 chr5 61414227 61414395 -91122864 - Lx5 LINE L1 -1062 4815 4627 5 1053 222 37 0 0 chr5 61414395 61414422 -91122837 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1053 15485 189 45 48 chr5 61414422 61415935 -91121324 - Lx5 LINE L1 -1251 4626 3052 5 1053 1033 65 6 6 chr5 61415935 61416091 -91121168 + (TTC)n Simple_repeat Simple_repeat 2 157 0 5 1053 15485 189 45 48 chr5 61416091 61417057 -91120202 - Lx5 LINE L1 -2826 3051 2105 5 1053 6160 49 1 0 chr5 61417057 61417817 -91119442 - L1Md_A LINE L1 -4 6578 5818 5 1053 32620 38 16 16 chr5 61417817 61418276 -91118983 - L1_Mm LINE L1 -492 5391 4926 5 1053 230 167 46 77 chr5 61418276 61418341 -91118918 + RMER20A LTR ERVK 186 248 -268 5 1053 32620 38 16 16 chr5 61418341 61422005 -91115254 - L1_Mm LINE L1 -492 4925 1203 5 1053 4889 125 3 103 chr5 61421971 61422913 -91114346 - L1Md_F LINE L1 -5380 1139 292 5 1053 277 301 29 0 chr5 61422907 61423010 -91114249 - L1_Mur3 LINE L1 -1134 4746 4641 5 1053 196 28 54 27 chr5 61423050 61423087 -91114172 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1053 269 323 57 4 chr5 61423091 61423321 -91113938 - L1_Mur3 LINE L1 -1289 4591 4350 5 1053 307 322 33 26 chr5 61423376 61423529 -91113730 - L1M2 LINE L1 -3035 3108 2955 5 1053 645 52 10 10 chr5 61423580 61423677 -91113582 - L1_Mus1 LINE L1 -2 6565 6469 5 1053 253 281 13 67 chr5 61423744 61423893 -91113366 - L1_Mur3 LINE L1 -3616 2264 2118 5 1053 309 219 60 26 chr5 61424015 61424132 -91113127 - Lx9 LINE L1 -1 7643 7523 5 1053 587 308 64 4 chr5 61424162 61424426 -91112833 + Lx9 LINE L1 7195 7474 -170 5 1053 404 282 106 42 chr5 61424455 61424815 -91112444 - L1_Mur3 LINE L1 -3830 2017 1636 5 1053 601 137 21 0 chr5 61425180 61425275 -91111984 - PB1D9 SINE Alu -15 105 9 5 1053 1164 129 6 0 chr5 61425333 61425511 -91111748 - ORR1A2 LTR MaLR -51 276 98 5 1053 240 35 0 0 chr5 61425529 61425558 -91111701 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 5 1053 2805 189 29 22 chr5 61425560 61426139 -91111120 - Lx LINE L1 -13 6641 6059 5 1053 504 0 0 0 chr5 61426605 61426661 -91110598 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1053 375 23 0 0 chr5 61427432 61427476 -91109783 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1053 1084 177 86 5 chr5 61428025 61428246 -91109013 - Lx2 LINE L1 -4 6993 6755 5 1053 1024 350 72 28 chr5 61428524 61429200 -91108059 + Lx8 LINE L1 6186 6891 -582 5 1053 468 0 0 0 chr5 61429539 61429591 -91107668 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1053 372 22 0 0 chr5 61429591 61429635 -91107624 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1053 3843 170 22 36 chr5 61429825 61430595 -91106664 + RMER12 LTR ERVK 5 763 -559 5 1053 571 249 123 64 chr5 61430582 61430801 -91106458 + RMER12 LTR ERVK 958 1189 -133 5 1053 23 33 0 0 chr5 61431377 61431407 -91105852 + AT_rich Low_complexity Low_complexity 1 30 0 5 1053 219 103 0 0 chr5 61431660 61431699 -91105560 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1053 2988 65 0 3 chr5 61431887 61432275 -91104984 - L1Md_F3 LINE L1 -1 6583 6197 5 1053 28513 58 6 6 chr5 61432275 61435346 -91101913 - L1Md_A LINE L1 -831 5055 2000 5 1053 300 55 0 52 chr5 61435346 61435404 -91101855 + (TATTG)n Simple_repeat Simple_repeat 5 59 0 5 1053 28513 58 6 6 chr5 61435404 61436118 -91101141 - L1Md_A LINE L1 -3887 1999 1271 5 1053 4114 175 17 9 chr5 61436120 61437104 -91100155 - L1Md_A LINE L1 -4516 1370 406 5 1053 369 0 0 0 chr5 61437247 61437288 -91099971 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1053 252 0 0 0 chr5 61437288 61437315 -91099944 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1053 1454 334 58 28 chr5 61438093 61438819 -91098440 + Lx8 LINE L1 6273 7020 -453 5 1053 376 348 98 15 chr5 61438830 61439034 -91098225 + Lx8 LINE L1 7070 7290 -183 5 1053 7139 137 61 38 chr5 61439239 61440392 -91096867 - Lx3A LINE L1 -58 6923 5722 5 1053 279 0 0 0 chr5 61440392 61440423 -91096836 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1053 7139 100 10 27 chr5 61440423 61440721 -91096538 - Lx3A LINE L1 -162 5724 5450 5 1053 1952 124 103 19 chr5 61440721 61441098 -91096161 + RLTR9E LTR ERVK 1 409 0 5 1053 6458 100 10 27 chr5 61441098 61441603 -91095656 - Lx3A LINE L1 -437 5449 4944 5 1053 1263 113 79 0 chr5 61441604 61441807 -91095452 + Lx3A LINE L1 4741 4959 -927 5 1053 1293 287 51 8 chr5 61442174 61442525 -91094734 + MTD LTR MaLR 12 377 -42 5 1053 217 68 22 22 chr5 61442538 61442583 -91094676 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1053 307 368 58 7 chr5 61442613 61442750 -91094509 - B4 SINE B4 -56 236 93 5 1053 204 200 33 16 chr5 61444301 61444362 -91092897 + T-rich Low_complexity Low_complexity 5 66 0 5 1053 9352 229 33 35 chr5 61444760 61447659 -91089600 - Lx6 LINE L1 -1240 6220 3320 5 1053 29631 42 6 1 chr5 61447666 61452015 -91085244 - L1Md_F2 LINE L1 0 6582 2206 5 1053 209 314 0 0 chr5 61452021 61452072 -91085187 + C-rich Low_complexity Low_complexity 5 55 0 5 1053 311 275 114 47 chr5 61452072 61452221 -91085038 - HAL1-3A_ME LINE L1 -419 2439 2281 5 1053 492 246 7 24 chr5 61452224 61452499 -91084760 + CT-rich Low_complexity Low_complexity 1 270 0 5 1053 293 260 10 0 chr5 61452531 61452631 -91084628 - Lx6 LINE L1 -3048 2829 2729 5 1053 230 242 0 0 chr5 61452694 61452760 -91084499 + T-rich Low_complexity Low_complexity 1 66 0 5 1053 1079 83 7 0 chr5 61452781 61452925 -91084334 - B1_Mm SINE Alu -1 146 2 5 1053 5626 245 46 14 chr5 61452925 61453387 -91083872 - Lx5 LINE L1 -55 6995 6537 5 1053 6234 70 6 22 chr5 61453387 61454222 -91083037 - RLTR13B2 LTR ERVK 0 822 1 5 1053 5626 218 51 13 chr5 61454222 61455452 -91081807 - Lx5 LINE L1 -514 6536 5227 5 1053 339 25 0 0 chr5 61455452 61455492 -91081767 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1053 378 0 0 0 chr5 61455492 61455533 -91081726 + (TA)n Simple_repeat Simple_repeat 2 43 0 5 1053 3209 190 56 12 chr5 61455533 61455571 -91081688 - Lx5 LINE L1 -651 5226 5190 5 1053 5005 182 17 14 chr5 61455567 61456582 -91080677 + L1_Mur2 LINE L1 3444 4461 -1416 5 1053 774 272 166 40 chr5 61456775 61457154 -91080105 - RMER13A LTR ERVK -420 440 14 5 1053 263 183 16 16 chr5 61457174 61457235 -91080024 + L1_Mur2 LINE L1 4453 4513 -1367 5 1053 243 0 0 0 chr5 61457581 61457608 -91079651 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1053 198 0 0 0 chr5 61457919 61457941 -91079318 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1053 2141 174 154 62 chr5 61458736 61459366 -91077893 + RMER6C LTR ERVK 1 688 -2 5 1053 489 219 0 0 chr5 61460051 61460170 -91077089 + (TG)n Simple_repeat Simple_repeat 1 119 0 5 1053 561 289 33 0 chr5 61460171 61460323 -91076936 - RSINE1 SINE B4 -1 164 8 5 1053 4995 73 25 3 chr5 61460805 61461496 -91075763 - L1Md_F2 LINE L1 0 6582 5877 5 1053 2149 201 133 84 chr5 61461499 61462070 -91075189 - RMER19C LTR ERVK -12 599 1 5 1053 186 133 0 0 chr5 61462242 61462272 -91074987 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 5 1053 33 25 0 0 chr5 61462291 61462331 -91074928 + AT_rich Low_complexity Low_complexity 1 40 0 5 1053 737 264 27 16 chr5 61462331 61462516 -91074743 - Lx6 LINE L1 -38 7422 7236 5 1053 3174 277 54 14 chr5 61462514 61463456 -91073803 - Lx6 LINE L1 -771 6689 5710 5 1053 333 0 0 0 chr5 61464191 61464228 -91073031 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1053 582 15 0 0 chr5 61464228 61464295 -91072964 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 1053 507 365 85 7 chr5 61464442 61464737 -91072522 - MTE2a LTR MaLR -57 322 4 6 1053 573 281 26 40 chr5 61465179 61465331 -91071928 + MTE2b LTR MaLR 218 367 -12 6 1053 1019 320 67 65 chr5 61465341 61465860 -91071399 - MT2A LTR ERVL -2 531 12 6 1053 201 182 0 0 chr5 61466014 61466047 -91071212 + (TTA)n Simple_repeat Simple_repeat 2 34 0 6 1053 301 397 66 0 chr5 61466066 61466202 -91071057 - RSINE1 SINE B4 -18 147 3 6 1053 189 107 0 0 chr5 61466638 61466666 -91070593 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1053 476 352 7 0 chr5 61467697 61467836 -91069423 + B3A SINE B2 1 140 -58 6 1053 364 350 49 29 chr5 61468061 61468343 -91068916 - Lx7 LINE L1 -199 7274 6978 6 1053 40 0 0 0 chr5 61469345 61469385 -91067874 + AT_rich Low_complexity Low_complexity 1 40 0 6 1053 226 283 19 0 chr5 61469385 61469438 -91067821 - MTE2b LTR MaLR -8 371 318 6 1053 21 0 0 0 chr5 61469956 61469977 -91067282 + AT_rich Low_complexity Low_complexity 1 21 0 6 1053 452 331 55 11 chr5 61470124 61470307 -91066952 - ORR1D2 LTR MaLR 0 370 180 6 1053 468 0 0 0 chr5 61470340 61470392 -91066867 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1053 351 0 0 0 chr5 61470398 61470437 -91066822 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1053 393 22 0 0 chr5 61470437 61470482 -91066777 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1053 1078 99 0 0 chr5 61470825 61470966 -91066293 + B1_Mus1 SINE Alu 2 142 -6 6 1053 396 0 0 0 chr5 61470967 61471011 -91066248 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 6 1053 512 314 22 9 chr5 61471366 61471597 -91065662 + L1MA9 LINE L1 5846 6079 -233 6 1053 260 307 7 14 chr5 61471722 61471861 -91065398 + L1MA9 LINE L1 6175 6312 0 6 1053 4566 101 39 15 chr5 61471877 61472562 -91064697 + L1_Mur1 LINE L1 5068 5769 -117 6 1053 273 123 200 0 chr5 61472559 61472624 -91064635 + Lx3A LINE L1 6904 6981 0 6 1053 222 37 0 0 chr5 61472624 61472651 -91064608 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 6 131 202 279 39 13 chr5 61472711 61472867 -91064392 + (TA)n Simple_repeat Simple_repeat 2 161 0 6 1054 387 193 0 0 chr5 61472931 61473019 -91064240 + (TA)n Simple_repeat Simple_repeat 1 88 0 6 1054 396 0 0 0 chr5 61473354 61473398 -91063861 + (TTTTG)n Simple_repeat Simple_repeat 5 48 0 6 1054 429 54 0 0 chr5 61473399 61473455 -91063804 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1054 308 360 29 87 chr5 61474071 61474278 -91062981 - ORR1D2 LTR MaLR -201 195 1 6 1054 264 322 18 86 chr5 61474303 61474466 -91062793 - MER92B LTR ERV1 -56 580 429 6 1054 948 178 0 0 chr5 61474521 61474701 -91062558 + CT-rich Low_complexity Low_complexity 1 180 0 6 1054 812 167 47 6 chr5 61474795 61474964 -91062295 - Lx2 LINE L1 -1 6996 6821 6 1054 28 29 0 0 chr5 61474967 61475002 -91062257 + AT_rich Low_complexity Low_complexity 1 35 0 6 1054 474 217 278 0 chr5 61475108 61475306 -91061953 - Lx9 LINE L1 -8 7636 7384 6 1054 365 302 8 8 chr5 61475322 61475439 -91061820 - Lx9 LINE L1 -428 7216 7100 6 1054 1794 253 31 2 chr5 61475443 61475859 -91061400 + Lx9 LINE L1 6324 6751 -893 6 1054 538 39 0 25 chr5 61475894 61475973 -91061286 + (TTTTG)n Simple_repeat Simple_repeat 2 78 0 6 1054 2194 249 169 27 chr5 61476798 61477586 -91059673 - RMER19B LTR ERVK 0 902 3 6 1054 21 36 0 0 chr5 61479071 61479099 -91058160 + AT_rich Low_complexity Low_complexity 1 28 0 6 1054 552 56 0 0 chr5 61479411 61479483 -91057776 + (CA)n Simple_repeat Simple_repeat 2 73 0 6 1054 291 308 59 59 chr5 61479957 61480109 -91057150 - RSINE1 SINE B4 -10 155 4 6 1054 272 105 35 0 chr5 61480614 61480671 -91056588 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 6 1054 531 31 0 0 chr5 61481198 61481263 -91055996 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 6 1054 228 26 132 0 chr5 61483944 61483982 -91053277 + CT-rich Low_complexity Low_complexity 2 44 0 6 1054 1219 33 0 53 chr5 61483983 61484173 -91053086 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 6 1054 444 91 0 0 chr5 61484179 61484245 -91053014 + (TCCCC)n Simple_repeat Simple_repeat 3 68 0 6 1054 211 315 14 0 chr5 61484253 61484326 -91052933 + CT-rich Low_complexity Low_complexity 3 76 0 6 1054 24 32 0 0 chr5 61484600 61484631 -91052628 + AT_rich Low_complexity Low_complexity 1 31 0 6 1054 297 228 0 0 chr5 61485182 61485261 -91051998 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 1054 22 0 0 0 chr5 61485275 61485297 -91051962 + AT_rich Low_complexity Low_complexity 1 22 0 6 1054 243 0 0 0 chr5 61485596 61485623 -91051636 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 1054 6855 78 4 4 chr5 61485983 61486902 -91050357 + L1_Mus2 LINE L1 5644 6562 -4 6 1054 232 257 14 14 chr5 61487456 61487527 -91049732 + Lx8 LINE L1 7052 7122 -351 6 1054 402 21 0 0 chr5 61487809 61487856 -91049403 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1054 386 396 28 28 chr5 61487933 61488216 -91049043 - B4A SINE B4 0 292 10 6 1054 311 361 101 11 chr5 61488644 61488823 -91048436 + B3A SINE B2 4 198 0 6 1054 189 121 0 0 chr5 61489085 61489118 -91048141 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 6 1054 751 238 25 55 chr5 61489656 61489892 -91047367 - Lx2B LINE L1 -5 6995 6767 6 1054 846 297 112 16 chr5 61489892 61490213 -91047046 + ORR1D2 LTR MaLR 5 356 -14 6 1054 22 0 0 0 chr5 61490575 61490597 -91046662 + AT_rich Low_complexity Low_complexity 1 22 0 6 1054 378 0 0 0 chr5 61490780 61490822 -91046437 + (TA)n Simple_repeat Simple_repeat 2 43 0 6 1054 475 324 104 16 chr5 61490852 61491034 -91046225 + MER70B LTR ERVL 279 476 -102 6 1054 27 0 0 0 chr5 61491222 61491249 -91046010 + AT_rich Low_complexity Low_complexity 1 27 0 6 1054 6377 74 0 6 chr5 61491311 61492204 -91045055 + L1_Mm LINE L1 1420 2307 -3576 6 1054 1209 112 21 31 chr5 61492204 61492398 -91044861 - LTRIS2 LTR ERV1 -304 260 69 6 1054 225 0 0 0 chr5 61492436 61492461 -91044798 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1054 912 305 38 3 chr5 61492534 61492827 -91044432 + Lx6 LINE L1 7146 7448 -12 6 1054 180 103 0 0 chr5 61492849 61492859 -91044400 + (A)n Simple_repeat Simple_repeat 1 10 0 6 1054 7697 35 0 1 chr5 61492859 61493799 -91043460 + L1Md_T LINE L1 5662 6582 0 6 1054 2537 60 18 0 chr5 61493799 61494135 -91043124 + LTRIS2 LTR ERV1 223 564 0 6 1054 835 286 19 54 chr5 61494138 61494397 -91042862 - Lx6 LINE L1 -882 6578 6329 6 1054 590 99 11 0 chr5 61494399 61494490 -91042769 + (TC)n Simple_repeat Simple_repeat 1 92 0 6 1054 738 200 45 6 chr5 61494519 61494675 -91042584 - Lx6 LINE L1 -1149 6311 6150 6 1054 1532 89 106 0 chr5 61494675 61494912 -91042347 - MTB LTR MaLR 0 400 139 6 1054 330 87 0 0 chr5 61495738 61495784 -91041475 + (TTTTC)n Simple_repeat Simple_repeat 2 47 0 6 1054 248 0 0 30 chr5 61496154 61496187 -91041072 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1054 1078 83 0 14 chr5 61496187 61496324 -91040935 - B1_Mm SINE Alu -10 137 1 6 1054 21 71 0 0 chr5 61496336 61496378 -91040881 + AT_rich Low_complexity Low_complexity 1 42 0 6 1054 41 0 0 0 chr5 61497291 61497332 -91039927 + AT_rich Low_complexity Low_complexity 1 41 0 6 1054 2616 70 61 3 chr5 61498144 61498210 -91039049 - L1Md_F2 LINE L1 -12 6570 6505 6 1054 204 40 0 0 chr5 61498210 61498235 -91039024 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 6 1054 2616 70 61 3 chr5 61498235 61498528 -91038731 - L1Md_F2 LINE L1 -78 6504 6191 6 1054 668 200 0 6 chr5 61498721 61498882 -91038377 + GA-rich Low_complexity Low_complexity 4 163 0 6 1054 1274 73 6 0 chr5 61498887 61499066 -91038193 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1054 267 293 0 83 chr5 61499622 61499730 -91037529 - MER5A DNA MER1_type -1 188 90 6 1054 1101 120 32 11 chr5 61501058 61501243 -91036016 - B2_Mm2 SINE B2 -6 189 1 1 1054 206 271 8 0 chr5 61501297 61501415 -91035844 + (TG)n Simple_repeat Simple_repeat 2 120 0 2 1054 1401 345 76 27 chr5 61501458 61501773 -91035486 + Lx8 LINE L1 6468 6777 -696 3 1054 3670 149 15 0 chr5 61501773 61502365 -91034894 + MT2B LTR ERVL 1 601 0 4 1054 1401 345 76 27 chr5 61502365 61503004 -91034255 + Lx8 LINE L1 6778 7469 -4 3 1054 298 323 11 0 chr5 61503179 61503272 -91033987 - RSINE1 SINE B4 -25 140 47 5 1054 4311 126 28 13 chr5 61503367 61504057 -91033202 + Lx LINE L1 5949 6648 -6 6 1054 298 294 113 30 chr5 61504743 61504911 -91032348 + MamRep434 DNA TcMar 221 402 -24 7 1054 482 176 71 0 chr5 61505697 61505782 -91031477 + RMER2 LTR ERV1 25 115 -452 8 1054 3562 147 64 5 chr5 61505782 61506411 -91030848 + Lx4A LINE L1 6390 7055 -3 9 1054 372 133 0 0 chr5 61506411 61506471 -91030788 + (TAA)n Simple_repeat Simple_repeat 1 60 0 1 1054 527 250 17 0 chr5 61507721 61507837 -91029422 + B1_Mur2 SINE Alu 11 128 -21 1 1054 237 297 0 13 chr5 61508134 61508209 -91029050 + T-rich Low_complexity Low_complexity 4 77 0 1 1054 4543 124 75 54 chr5 61508358 61509242 -91028017 - RLTR13D6 LTR ERVK 0 902 1 1 1054 893 241 29 48 chr5 61509600 61509975 -91027284 - RMER2 LTR ERV1 -139 428 1 1 1054 277 354 34 34 chr5 61510826 61510943 -91026316 + B4A SINE B4 6 122 -170 1 1054 558 29 0 0 chr5 61511098 61511166 -91026093 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1054 299 358 72 32 chr5 61511224 61511570 -91025689 + Lx8 LINE L1 7081 7440 -33 1 1054 29 84 0 0 chr5 61511574 61511645 -91025614 + AT_rich Low_complexity Low_complexity 1 71 0 1 1054 312 161 0 0 chr5 61512435 61512497 -91024762 + GA-rich Low_complexity Low_complexity 2 63 0 1 1054 209 122 24 0 chr5 61513195 61513236 -91024023 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 2 1054 988 73 0 0 chr5 61513312 61513448 -91023811 + B1_Mus1 SINE Alu 13 148 0 2 1054 1426 284 56 93 chr5 61513518 61514181 -91023078 + RLTR26 LTR ERVK 5 642 0 2 1054 22 56 0 0 chr5 61514273 61514309 -91022950 + AT_rich Low_complexity Low_complexity 1 36 0 2 1054 785 110 8 0 chr5 61514754 61514881 -91022378 + (TCTA)n Simple_repeat Simple_repeat 2 129 0 2 1054 969 71 0 0 chr5 61516202 61516328 -91020931 + B1_Mm SINE Alu 17 142 -5 2 1054 204 40 0 0 chr5 61516335 61516360 -91020899 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 1054 1092 114 80 6 chr5 61516738 61516914 -91020345 - B2_Mm2 SINE B2 -5 190 2 2 1054 423 322 116 39 chr5 61516920 61517283 -91019976 - L1M4 LINE L1 -497 5665 5270 2 1054 615 316 51 38 chr5 61517770 61518083 -91019176 + Lx9 LINE L1 6933 7249 -395 2 1054 201 196 0 0 chr5 61518354 61518400 -91018859 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1054 3578 208 100 16 chr5 61518783 61519657 -91017602 - Lx3C LINE L1 0 7000 6046 3 1054 6232 170 13 67 chr5 61519653 61521024 -91016235 - L1_Mur2 LINE L1 -471 5406 4110 3 1054 2415 87 8 6 chr5 61521684 61522044 -91015215 + L1_Mus3 LINE L1 6272 6632 -6 3 1054 224 204 0 0 chr5 61522481 61522530 -91014729 + (TCTCTG)n Simple_repeat Simple_repeat 5 53 0 3 1054 317 43 43 0 chr5 61522545 61522591 -91014668 + (TCTCTG)n Simple_repeat Simple_repeat 3 50 0 3 1054 189 74 0 0 chr5 61522591 61522618 -91014641 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1054 253 242 0 16 chr5 61522706 61522769 -91014490 + CT-rich Low_complexity Low_complexity 3 64 0 3 1054 304 111 32 0 chr5 61524491 61524554 -91012705 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 1054 698 85 0 19 chr5 61524615 61524723 -91012536 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 3 1054 1769 317 50 40 chr5 61524773 61525722 -91011537 + Lx9 LINE L1 6418 7375 -269 3 1054 245 210 16 0 chr5 61525749 61525811 -91011448 + (TA)n Simple_repeat Simple_repeat 2 64 0 4 1054 24 32 0 0 chr5 61526179 61526210 -91011049 + AT_rich Low_complexity Low_complexity 1 31 0 4 1054 2404 99 44 3 chr5 61526211 61526574 -91010685 - L1_Mus3 LINE L1 -1 6637 6260 4 1054 249 83 0 0 chr5 61527658 61527694 -91009565 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1054 294 29 0 0 chr5 61527694 61527728 -91009531 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1054 651 189 0 0 chr5 61528969 61529101 -91008158 + (TA)n Simple_repeat Simple_repeat 2 133 0 4 1054 288 341 70 77 chr5 61530189 61530488 -91006771 + MER67D LTR ERV1 124 420 -94 4 1054 21 71 0 0 chr5 61531549 61531591 -91005668 + AT_rich Low_complexity Low_complexity 1 42 0 4 1054 214 342 85 26 chr5 61531918 61532071 -91005188 - MIR SINE MIR -33 229 68 4 1054 1077 86 0 0 chr5 61533097 61533237 -91004022 - B1_Mus2 SINE Alu -7 140 1 4 1054 4537 210 68 13 chr5 61533247 61534332 -91002927 - Lx2B LINE L1 -5 6995 5851 5 1054 21 0 0 0 chr5 61534901 61534922 -91002337 + AT_rich Low_complexity Low_complexity 1 21 0 5 1054 259 324 0 0 chr5 61535870 61535978 -91001281 + (TG)n Simple_repeat Simple_repeat 1 108 0 5 1054 303 49 0 0 chr5 61535997 61536038 -91001221 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1054 21 0 0 0 chr5 61536442 61536463 -91000796 + AT_rich Low_complexity Low_complexity 1 21 0 5 1054 259 355 53 35 chr5 61537131 61537245 -91000014 - PB1D10 SINE Alu -1 116 1 5 1054 558 93 0 0 chr5 61538199 61538285 -90998974 + (TCC)n Simple_repeat Simple_repeat 3 88 0 5 1054 213 121 0 0 chr5 61538811 61538844 -90998415 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1054 200 128 26 0 chr5 61538879 61538918 -90998341 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 5 1054 719 150 0 8 chr5 61539172 61539300 -90997959 - Lx LINE L1 -8 6646 6520 5 1054 480 35 0 0 chr5 61539365 61539423 -90997836 + (CATA)n Simple_repeat Simple_repeat 2 59 0 5 1054 685 229 0 7 chr5 61539979 61540120 -90997139 - B1_Mus1 SINE Alu -4 144 5 6 1054 239 358 52 26 chr5 61542329 61542484 -90994775 + MIRb SINE MIR 66 224 -44 6 1054 3030 44 10 10 chr5 61542554 61542946 -90994313 + L1Md_F3 LINE L1 6193 6584 0 6 1054 489 231 28 0 chr5 61544620 61544728 -90992531 - ORR1D1 LTR MaLR 0 374 264 6 1054 1472 226 35 35 chr5 61544729 61545101 -90992158 - ORR1D1 LTR MaLR 0 374 3 6 1054 329 296 227 14 chr5 61545366 61545582 -90991677 + MER67C LTR ERV1 58 319 -392 6 1054 243 88 0 0 chr5 61545861 61545895 -90991364 + (TA)n Simple_repeat Simple_repeat 2 35 0 6 1054 296 319 36 68 chr5 61548081 61548104 -90989155 - CYRA11_Mm Unknown Y-chromosome -209 408 243 6 1054 938 261 14 0 chr5 61548104 61548322 -90988937 + URR1A DNA MER1_type 1 221 -5 6 1054 343 23 0 0 chr5 61548365 61548408 -90988851 + Lx LINE L1 5927 5969 -685 6 1054 839 176 77 5 chr5 61548402 61548596 -90988663 + Lx LINE L1 6447 6654 0 7 1054 3507 78 0 0 chr5 61548649 61549124 -90988135 - L1_Mm LINE L1 -1773 4110 3636 7 1054 397 248 16 0 chr5 61549131 61549260 -90987999 - L1_Mur3 LINE L1 -533 5347 5217 7 1054 1303 333 39 11 chr5 61549297 61549756 -90987503 + Lx6 LINE L1 6809 7280 -180 7 1054 982 97 21 0 chr5 61549778 61549922 -90987337 - B1_Mm SINE Alu 0 147 1 7 1054 29 0 0 0 chr5 61550247 61550276 -90986983 + AT_rich Low_complexity Low_complexity 1 29 0 7 1054 255 391 56 35 chr5 61550683 61550826 -90986433 + B4A SINE B4 1 146 -146 7 1054 393 22 0 0 chr5 61550952 61550998 -90986261 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1054 27 62 0 0 chr5 61552032 61552080 -90985179 + AT_rich Low_complexity Low_complexity 1 48 0 7 1054 1640 99 0 4 chr5 61552115 61552349 -90984910 - L1Md_F2 LINE L1 -3 6579 6347 7 1054 981 49 0 0 chr5 61552349 61552472 -90984787 + L1Md_F2 LINE L1 6223 6345 -237 7 1054 21 36 0 0 chr5 61553044 61553072 -90984187 + AT_rich Low_complexity Low_complexity 1 28 0 8 1054 205 186 0 0 chr5 61554003 61554046 -90983213 + (TTG)n Simple_repeat Simple_repeat 2 44 0 8 1054 23 92 0 0 chr5 61555099 61555164 -90982095 + AT_rich Low_complexity Low_complexity 1 65 0 8 1054 426 344 83 42 chr5 61555213 61555781 -90981478 + L2 LINE L2 1811 2401 -1018 8 1054 8705 94 1 2 chr5 61556583 61557144 -90980115 + Lx3A LINE L1 5351 5920 -1061 8 1054 366 23 0 0 chr5 61557144 61557187 -90980072 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 1054 8705 114 27 15 chr5 61557187 61558243 -90979016 + Lx3A LINE L1 5921 6981 0 8 1054 244 283 0 0 chr5 61558244 61558304 -90978955 + GA-rich Low_complexity Low_complexity 2 61 0 8 1054 1770 83 0 70 chr5 61558397 61558669 -90978590 - L1_Mus2 LINE L1 0 6566 6314 8 1054 278 294 37 0 chr5 61558759 61558868 -90978391 + Lx9 LINE L1 7284 7396 -248 8 1054 4047 44 14 16 chr5 61559441 61559954 -90977305 + L1Md_F3 LINE L1 6073 6584 0 8 1054 21 36 0 0 chr5 61560093 61560121 -90977138 + AT_rich Low_complexity Low_complexity 1 28 0 9 1054 417 81 0 0 chr5 61560551 61560613 -90976646 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 1054 22 70 0 0 chr5 61561264 61561307 -90975952 + AT_rich Low_complexity Low_complexity 1 43 0 9 1054 487 348 66 49 chr5 61562319 61562624 -90974635 + Lx8 LINE L1 6258 6567 -906 9 1054 382 341 57 23 chr5 61562705 61562969 -90974290 - Lx8 LINE L1 -561 6912 6640 9 1054 780 231 75 19 chr5 61563278 61563490 -90973769 + URR1B DNA MER1_type 2 225 0 9 1054 25 51 0 0 chr5 61564337 61564376 -90972883 + AT_rich Low_complexity Low_complexity 1 39 0 9 1054 23 0 0 0 chr5 61564861 61564884 -90972375 + AT_rich Low_complexity Low_complexity 1 23 0 9 1054 2034 99 27 0 chr5 61566050 61566343 -90970916 - L1Md_F2 LINE L1 -492 6090 5790 9 1054 3403 112 2 4 chr5 61566343 61566845 -90970414 + L1Md_F2 LINE L1 6080 6580 -2 9 1054 2182 118 9 0 chr5 61567102 61567433 -90969826 - Lx3_Mus LINE L1 0 7009 6676 9 1054 677 296 142 31 chr5 61567695 61567936 -90969323 + Lx6 LINE L1 7048 7307 -153 1 1054 339 65 0 0 chr5 61567936 61567982 -90969277 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1054 677 296 142 31 chr5 61567982 61568064 -90969195 + Lx6 LINE L1 7308 7406 -54 1 1054 246 125 0 0 chr5 61568065 61568113 -90969146 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1054 212 72 53 18 chr5 61568100 61568157 -90969102 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1054 3989 184 39 4 chr5 61568289 61569112 -90968147 - L1_Mur2 LINE L1 -651 5226 4375 1 1054 1863 165 19 22 chr5 61569112 61569435 -90967824 - Lx2 LINE L1 -80 6917 6596 1 1054 2173 167 23 144 chr5 61569436 61570045 -90967214 + RMER6C LTR ERVK 156 690 0 1 1054 602 291 0 0 chr5 61570667 61570815 -90966444 + B3A SINE B2 6 153 -45 1 1054 204 40 0 0 chr5 61570836 61570861 -90966398 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 1 1054 340 85 17 0 chr5 61571141 61571200 -90966059 + RLTR11B LTR ERVK 229 288 -165 1 1054 3980 120 109 8 chr5 61571592 61572813 -90964446 + L1Md_F2 LINE L1 214 1553 -4330 1 1054 6705 91 567 7 chr5 61572811 61574425 -90962834 + L1Md_F2 LINE L1 3069 5586 -297 1 1054 6771 98 14 11 chr5 61574426 61575399 -90961860 + L1Md_F2 LINE L1 5588 6563 -19 1 1054 458 17 17 0 chr5 61575399 61575458 -90961801 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 1 1054 661 86 29 0 chr5 61575487 61575592 -90961667 + (GAAA)n Simple_repeat Simple_repeat 4 111 0 1 1054 2212 154 17 3 chr5 61575594 61575951 -90961308 - Lx2 LINE L1 -329 6668 6307 1 1054 1776 211 71 33 chr5 61575951 61576398 -90960861 - RLTR9D LTR ERVK 0 420 1 1 1054 494 84 27 27 chr5 61576398 61576471 -90960788 - Lx2 LINE L1 -685 6312 6240 1 1054 1371 158 63 0 chr5 61576471 61576724 -90960535 + Lx2 LINE L1 6715 6983 -14 1 1054 291 194 21 11 chr5 61577116 61577210 -90960049 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 1 1054 21 36 0 0 chr5 61577592 61577620 -90959639 + AT_rich Low_complexity Low_complexity 1 28 0 1 1054 435 296 26 84 chr5 61578166 61578321 -90958938 - B3A SINE B2 -51 147 2 1 1054 345 373 58 51 chr5 61578682 61578939 -90958320 - LTR89 LTR ERVL? -37 842 584 1 1054 2216 191 36 2 chr5 61580281 61580695 -90956564 + Lx4A LINE L1 6628 7055 -3 1 1054 21 0 0 0 chr5 61580702 61580723 -90956536 + AT_rich Low_complexity Low_complexity 1 21 0 1 1054 370 50 50 0 chr5 61581337 61581397 -90955862 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 1 1054 569 80 0 0 chr5 61582617 61582705 -90954554 - L1Md_F2 LINE L1 -12 6570 6483 1 1054 23 0 0 0 chr5 61582737 61582760 -90954499 + AT_rich Low_complexity Low_complexity 1 23 0 1 1054 1039 115 0 0 chr5 61583227 61583366 -90953893 - B1_Mus1 SINE Alu -7 141 3 1 1054 22 35 0 0 chr5 61585913 61585942 -90951317 + AT_rich Low_complexity Low_complexity 1 29 0 1 1054 2674 93 8 0 chr5 61586611 61586988 -90950271 - L1_Mus3 LINE L1 -12 6626 6247 1 1054 714 77 0 28 chr5 61586979 61587086 -90950173 + L1_Mus3 LINE L1 5705 5808 -830 1 1054 8090 50 0 0 chr5 61587084 61588261 -90948998 - L1Md_F2 LINE L1 0 6582 5406 1 1054 2542 76 3 6 chr5 61588258 61588603 -90948656 + L1Md_F2 LINE L1 5015 5358 -525 1 1054 3219 83 11 0 chr5 61588599 61589043 -90948216 + L1_Mus3 LINE L1 5791 6239 -399 1 1054 435 106 0 0 chr5 61589935 61590001 -90947258 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1054 381 305 20 25 chr5 61590176 61590477 -90946782 + Lx7 LINE L1 5691 6004 -1640 1 1054 341 346 59 23 chr5 61590666 61590885 -90946374 + Lx7 LINE L1 6215 6441 -1032 1 1054 470 119 12 0 chr5 61591147 61591231 -90946028 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1054 180 200 0 0 chr5 61591233 61591283 -90945976 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1054 183 80 0 0 chr5 61591711 61591736 -90945523 + (TATG)n Simple_repeat Simple_repeat 3 27 0 1 1054 306 0 0 0 chr5 61591813 61591847 -90945412 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1 1054 498 274 30 0 chr5 61591847 61591982 -90945277 - Lx4A LINE L1 -11 7047 6909 1 1054 445 323 115 11 chr5 61592043 61592312 -90944947 - Lx9 LINE L1 -301 7343 7047 1 1054 6608 125 34 1 chr5 61592326 61593511 -90943748 - L1_Mus3 LINE L1 -2 6636 5410 1 1054 5215 152 26 34 chr5 61593497 61593970 -90943289 + L1_Mm LINE L1 4473 4936 -947 1 1054 265 24 48 0 chr5 61593970 61594012 -90943247 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1 1054 5215 152 26 34 chr5 61594012 61594039 -90943220 + L1_Mm LINE L1 4937 4948 -935 1 1054 2756 59 3 3 chr5 61594039 61594398 -90942861 - L1_Mus1 LINE L1 -2 6565 6207 1 1054 5215 152 26 34 chr5 61594398 61594878 -90942381 + L1_Mm LINE L1 4949 5447 -436 1 1054 608 290 129 0 chr5 61594913 61595161 -90942098 - Lx9 LINE L1 -617 7027 6748 1 1054 8374 111 15 12 chr5 61595195 61597183 -90940076 - L1_Mus2 LINE L1 0 6566 4573 1 1054 528 257 7 73 chr5 61597585 61597736 -90939523 + B1_Mur3 SINE Alu 1 141 -8 1 1054 312 48 0 0 chr5 61597741 61597783 -90939476 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1 1054 8867 58 7 0 chr5 61598162 61599320 -90937939 + L1Md_F2 LINE L1 3552 4717 -1166 1 1054 1821 77 0 0 chr5 61599316 61599551 -90937708 + L1Md_F2 LINE L1 5351 5585 -298 1 1054 7752 63 3 0 chr5 61599552 61600533 -90936726 + L1Md_F2 LINE L1 5587 6570 -12 1 1054 210 296 61 12 chr5 61601974 61602056 -90935203 + MIRc SINE MIR 158 243 -25 1 1054 26 30 0 0 chr5 61602289 61602322 -90934937 + AT_rich Low_complexity Low_complexity 1 33 0 1 1054 531 328 96 28 chr5 61602690 61603013 -90934246 + Tigger7 DNA MER2_type 2136 2480 -11 1 1054 4691 44 0 0 chr5 61603019 61603585 -90933674 + L1Md_T LINE L1 6017 6582 0 1 1055 1901 81 0 0 chr5 61603937 61604184 -90933075 + L1_Mus1 LINE L1 6311 6557 -10 1 1055 35326 35 0 0 chr5 61604184 61609609 -90927650 + L1Md_T LINE L1 68 5589 -297 1 1055 8935 7 0 0 chr5 61609609 61610605 -90926654 + L1Md_T LINE L1 5590 6585 0 1 1055 480 136 0 0 chr5 61610624 61610641 -90926618 + (GAAA)n Simple_repeat Simple_repeat 2 18 0 1 1055 690 65 0 0 chr5 61610641 61610733 -90926526 + (CGA)n Simple_repeat Simple_repeat 2 93 0 1 1055 480 136 0 0 chr5 61610733 61610796 -90926463 + (GAAA)n Simple_repeat Simple_repeat 3 65 0 1 1055 3078 158 25 32 chr5 61610825 61611528 -90925731 + L1VL4 LINE L1 348 1038 -2521 1 1055 3796 146 9 3 chr5 61611526 61612212 -90925047 + L1VL4 LINE L1 2434 3123 -436 1 1055 634 114 24 16 chr5 61612553 61612678 -90924581 + Lx3_Mus LINE L1 6884 7009 0 1 1055 266 358 9 18 chr5 61612955 61613066 -90924193 + RMER12 LTR ERVK 742 851 -471 1 1055 221 200 22 0 chr5 61613067 61613112 -90924147 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1 1055 676 88 0 34 chr5 61614905 61615023 -90922236 + Lx2 LINE L1 6884 6997 0 1 1055 4884 250 40 28 chr5 61615692 61616998 -90920261 - Lx5 LINE L1 -86 6964 5643 1 1055 5626 128 17 27 chr5 61617808 61618733 -90918526 + L1VL1 LINE L1 149 1064 -5358 1 1055 28 79 0 0 chr5 61618859 61618922 -90918337 + AT_rich Low_complexity Low_complexity 1 63 0 1 1055 922 248 152 41 chr5 61619152 61619539 -90917720 + RLTR23 LTR ERV1 1 430 0 1 1055 22 0 0 0 chr5 61620648 61620670 -90916589 + AT_rich Low_complexity Low_complexity 1 22 0 1 1055 2730 70 63 16 chr5 61621564 61621944 -90915315 + MTB LTR MaLR 1 398 -2 1 1055 551 244 101 27 chr5 61622109 61622328 -90914931 + Lx9 LINE L1 7402 7636 -8 1 1055 1101 88 0 13 chr5 61622640 61622789 -90914470 + B1_Mus1 SINE Alu 1 147 -1 1 1055 300 70 0 0 chr5 61622798 61622841 -90914418 + (CAAAAA)n Simple_repeat Simple_repeat 3 45 0 1 1055 35129 49 0 5 chr5 61623535 61629004 -90908255 + L1Md_T LINE L1 50 5589 -297 1 1055 8269 34 8 0 chr5 61629004 61629992 -90907267 + L1Md_T LINE L1 5590 6585 0 1 1055 21 36 0 0 chr5 61630471 61630499 -90906760 + AT_rich Low_complexity Low_complexity 1 28 0 1 1055 23 33 0 0 chr5 61630764 61630794 -90906465 + AT_rich Low_complexity Low_complexity 1 30 0 1 1055 933 37 9 0 chr5 61631031 61631159 -90906100 + L1_Mus1 LINE L1 6182 6316 -268 1 1055 670 175 24 0 chr5 61631144 61631270 -90905989 + Lx2 LINE L1 6296 6424 -573 1 1055 23 0 0 0 chr5 61632629 61632652 -90904607 + AT_rich Low_complexity Low_complexity 1 23 0 1 1055 3157 110 52 0 chr5 61632751 61633232 -90904027 + Lx2 LINE L1 6492 6997 0 1 1055 225 0 0 0 chr5 61633685 61633710 -90903549 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1055 37 0 0 0 chr5 61633711 61633748 -90903511 + AT_rich Low_complexity Low_complexity 1 37 0 1 1055 675 273 0 0 chr5 61634127 61634299 -90902960 - Lx9 LINE L1 -371 7273 7102 1 1055 1377 203 43 182 chr5 61634308 61634932 -90902327 - RMER6A LTR ERVK 0 690 115 1 1055 276 332 167 83 chr5 61635439 61635679 -90901580 + B4A SINE B4 4 263 -29 1 1055 224 244 0 0 chr5 61635822 61635867 -90901392 + PB1 SINE Alu 63 107 -20 1 1055 26 0 0 0 chr5 61635946 61635972 -90901287 + AT_rich Low_complexity Low_complexity 1 26 0 1 1055 22 80 0 0 chr5 61637441 61637491 -90899768 + AT_rich Low_complexity Low_complexity 1 50 0 1 1055 276 185 0 0 chr5 61637596 61637650 -90899609 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1055 1533 307 46 64 chr5 61637859 61638478 -90898781 + Lx9 LINE L1 6385 6986 -658 1 1055 360 0 0 0 chr5 61638478 61638518 -90898741 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1055 1533 307 46 64 chr5 61638518 61638695 -90898564 + Lx9 LINE L1 6987 7167 -477 1 1055 1869 104 11 1 chr5 61638962 61639238 -90898021 - L1_Mus1 LINE L1 -435 6132 5878 1 1055 2983 76 2 2 chr5 61639238 61639632 -90897627 + L1_Mus1 LINE L1 6174 6567 0 1 1055 21 0 0 0 chr5 61639632 61639653 -90897606 + AT_rich Low_complexity Low_complexity 1 21 0 1 1055 221 256 41 12 chr5 61640213 61640383 -90896876 + (TA)n Simple_repeat Simple_repeat 2 176 0 1 1055 1032 213 102 0 chr5 61640834 61641078 -90896181 - ORR1C1 LTR MaLR -64 314 46 1 1055 317 225 0 0 chr5 61641172 61641243 -90896016 + Lx7 LINE L1 7258 7328 -368 1 1055 450 0 0 0 chr5 61641269 61641319 -90895940 + (TCCC)n Simple_repeat Simple_repeat 1 50 0 1 1055 323 295 42 108 chr5 61641319 61641486 -90895773 - HAL1-3A_ME LINE L1 -421 2437 2282 1 1055 539 112 10 0 chr5 61641533 61641631 -90895628 + (TC)n Simple_repeat Simple_repeat 2 100 0 1 1055 246 32 0 0 chr5 61641631 61641662 -90895597 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1055 452 304 56 83 chr5 61641664 61641931 -90895328 + Lx7 LINE L1 7357 7618 -78 1 1055 3452 20 2 0 chr5 61641931 61642326 -90894933 + MTA_Mm LTR MaLR 1 396 0 1 1055 9443 21 1 3 chr5 61642326 61643426 -90893833 + MTA_Mm-int LTR MaLR 1 1098 0 1 1055 3362 33 2 0 chr5 61643426 61643821 -90893438 + MTA_Mm LTR MaLR 1 396 0 1 1055 452 304 56 83 chr5 61643821 61643888 -90893371 + Lx7 LINE L1 7619 7682 -14 1 1055 1371 204 15 19 chr5 61643888 61644213 -90893046 - L1Md_A LINE L1 -6 6576 6253 1 1055 386 319 123 94 chr5 61644215 61644492 -90892767 - MTD LTR MaLR -128 291 7 1 1055 246 176 0 0 chr5 61644827 61644878 -90892381 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1055 30 45 0 0 chr5 61646244 61646288 -90890971 + AT_rich Low_complexity Low_complexity 1 44 0 2 1055 2116 110 104 0 chr5 61646863 61647199 -90890060 - Lx LINE L1 -5 6649 6279 2 1055 403 232 183 9 chr5 61647418 61647631 -90889628 + MTC-int LTR MaLR 1007 1256 -2 2 1055 398 295 118 21 chr5 61647845 61648032 -90889227 + MTC LTR MaLR 203 407 -14 2 1055 434 307 77 42 chr5 61648548 61648691 -90888568 + RSINE1 SINE B4 12 159 -6 2 1055 208 169 56 0 chr5 61648696 61648767 -90888492 + (TTAAA)n Simple_repeat Simple_repeat 2 76 0 2 1055 591 15 0 0 chr5 61649416 61649484 -90887775 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 2 1055 477 0 0 0 chr5 61649484 61649536 -90887723 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1055 6084 117 30 53 chr5 61649973 61651005 -90886254 - Lx LINE L1 -3 6651 5644 2 1055 2379 126 22 8 chr5 61651005 61651373 -90885886 + Lx LINE L1 5288 5660 -223 2 1055 24 53 0 0 chr5 61651409 61651447 -90885812 + AT_rich Low_complexity Low_complexity 1 38 0 2 1055 3701 214 49 12 chr5 61651447 61652244 -90885015 + Lx2B LINE L1 6175 7000 0 2 1055 320 375 61 30 chr5 61652468 61652666 -90884593 + MLT2F LTR ERVL 239 442 -221 2 1055 378 115 0 0 chr5 61652745 61652806 -90884453 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1055 218 176 20 0 chr5 61652844 61652895 -90884364 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1055 1070 71 0 7 chr5 61653311 61653453 -90883806 + B1_Mm SINE Alu 2 142 -5 2 1055 39 0 0 0 chr5 61653502 61653541 -90883718 + AT_rich Low_complexity Low_complexity 1 39 0 2 1055 2539 203 34 19 chr5 61653609 61653692 -90883567 - RLTR20A LTR ERVK -10 531 441 2 1055 750 73 0 0 chr5 61653692 61653802 -90883457 + (CA)n Simple_repeat Simple_repeat 2 111 0 2 1055 2539 203 34 19 chr5 61653802 61654241 -90883018 - RLTR20A LTR ERVK -101 440 2 2 1055 763 346 52 52 chr5 61654263 61654629 -90882630 - MTE2b LTR MaLR -13 366 1 2 1055 198 174 0 0 chr5 61654673 61654719 -90882540 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1055 638 299 0 52 chr5 61656492 61656704 -90880555 - B3 SINE B2 -11 205 5 2 1055 365 325 124 6 chr5 61656717 61656878 -90880381 - B4A SINE B4 -69 223 44 2 1055 231 36 0 0 chr5 61657387 61657415 -90879844 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1055 243 0 0 0 chr5 61657415 61657441 -90879818 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1055 591 296 19 26 chr5 61657448 61657604 -90879655 - B3 SINE B2 -58 158 4 2 1055 3007 48 0 3 chr5 61658461 61658819 -90878440 + IAPEY2_LTR LTR ERVK 1 357 0 2 1055 412 286 17 75 chr5 61658832 61659127 -90878132 - Lx9 LINE L1 -2 7642 7365 2 1055 26 0 0 0 chr5 61661187 61661213 -90876046 + AT_rich Low_complexity Low_complexity 1 26 0 2 1055 906 36 0 0 chr5 61662511 61662622 -90874637 + L1Md_F2 LINE L1 6196 6306 -276 2 1055 24505 76 2 2 chr5 61662636 61664655 -90872604 - L1Md_F2 LINE L1 -132 6450 4439 2 1055 3220 37 5 5 chr5 61664655 61665058 -90872201 - L1Md_F3 LINE L1 0 6584 6182 2 1055 24505 83 0 4 chr5 61665058 61666958 -90870301 - L1Md_F2 LINE L1 -1445 4438 2539 2 1055 24264 115 17 21 chr5 61666959 61671383 -90865876 - L1Md_F LINE L1 -1234 4649 245 2 1055 446 205 155 12 chr5 61671384 61671503 -90865756 + B1_Mus1 SINE Alu 9 137 -13 2 1055 1694 170 62 3 chr5 61671503 61671828 -90865431 + Lx6 LINE L1 5369 5712 -165 2 1055 3513 146 72 5 chr5 61671841 61672496 -90864763 + L1_Mur2 LINE L1 3749 4447 -1430 2 1055 386 109 0 0 chr5 61672491 61672546 -90864713 + L1_Mur2 LINE L1 4658 4712 -1165 2 1055 237 108 0 0 chr5 61672569 61672606 -90864653 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 2 1055 1115 75 7 0 chr5 61672606 61672752 -90864507 - B1_Mm SINE Alu 0 147 1 2 1055 1300 216 25 25 chr5 61673042 61673317 -90863942 - RLTR21 LTR ERVK 0 1572 1298 2 1055 1041 90 0 0 chr5 61673318 61673473 -90863786 + (CA)n Simple_repeat Simple_repeat 2 156 0 2 1055 6286 162 14 13 chr5 61673474 61674562 -90862697 - RLTR21 LTR ERVK -479 1093 5 2 1055 540 111 0 0 chr5 61674564 61674654 -90862605 + (CA)n Simple_repeat Simple_repeat 1 90 0 2 1055 3873 103 32 14 chr5 61674840 61675433 -90861826 + L1_Mus3 LINE L1 6025 6628 -10 2 1055 21 0 0 0 chr5 61675433 61675454 -90861805 + AT_rich Low_complexity Low_complexity 1 21 0 2 1055 1709 274 103 17 chr5 61675456 61676046 -90861213 - Lx6 LINE L1 -169 7291 6651 2 1055 1611 245 13 11 chr5 61676245 61676620 -90860639 + Lx6 LINE L1 6189 6564 -896 2 1055 1064 124 62 0 chr5 61676637 61676815 -90860444 - B2_Mm2 SINE B2 -5 190 2 2 1055 5965 57 1 8 chr5 61676835 61677598 -90859661 - L1Md_F2 LINE L1 0 6582 5825 2 1055 4752 84 0 0 chr5 61677598 61678262 -90858997 - L1Md_F LINE L1 -3356 2527 1864 2 1055 7091 124 32 19 chr5 61678256 61679852 -90857407 - L1Md_F LINE L1 -4234 1649 100 2 1055 825 246 58 22 chr5 61679840 61680118 -90857141 - L1VL1 LINE L1 -6125 297 10 2 1055 501 266 0 0 chr5 61680117 61680230 -90857029 + Lx6 LINE L1 6551 6663 -797 2 1055 318 389 6 6 chr5 61680561 61680724 -90856535 - RSINE1 SINE B4 0 165 3 2 1055 23 0 0 0 chr5 61680889 61680912 -90856347 + AT_rich Low_complexity Low_complexity 1 23 0 2 1055 747 321 81 58 chr5 61681476 61682092 -90855167 - MLT1-int LTR MaLR -741 630 1 2 1055 231 342 13 26 chr5 61682502 61682580 -90854679 - ID4_ SINE ID -2 81 5 2 1055 966 124 7 0 chr5 61682984 61683129 -90854130 - B1_Mus1 SINE Alu -2 146 1 2 1055 282 361 27 18 chr5 61683424 61683534 -90853725 + B3 SINE B2 38 148 -68 2 1055 35342 37 1 0 chr5 61684039 61690079 -90847180 + L1Md_T LINE L1 1 5589 -297 2 1055 8900 7 0 4 chr5 61690079 61691079 -90846180 + L1Md_T LINE L1 5590 6585 0 2 1055 24 32 0 0 chr5 61691530 61691561 -90845698 + AT_rich Low_complexity Low_complexity 1 31 0 2 1055 1078 158 16 0 chr5 61692269 61692452 -90844807 - B2_Mm2 SINE B2 -8 187 2 2 1055 4440 167 126 38 chr5 61692637 61693649 -90843610 - RLTR25A LTR ERVK -2 1101 1 2 1055 380 71 18 0 chr5 61693814 61693870 -90843389 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1055 490 358 122 12 chr5 61693882 61694062 -90843197 - B4A SINE B4 -10 282 75 2 1055 408 20 0 0 chr5 61694062 61694111 -90843148 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1055 490 358 122 12 chr5 61694111 61694176 -90843083 - B4A SINE B4 -218 74 11 2 1055 24 0 0 0 chr5 61695173 61695197 -90842062 + AT_rich Low_complexity Low_complexity 1 24 0 2 1055 564 318 95 39 chr5 61696415 61696700 -90840559 + RMER5 LTR ERV1 234 534 0 2 1055 22 103 0 0 chr5 61696775 61696853 -90840406 + AT_rich Low_complexity Low_complexity 1 78 0 2 1055 21 0 0 0 chr5 61697266 61697287 -90839972 + AT_rich Low_complexity Low_complexity 1 21 0 2 1055 6231 111 29 0 chr5 61697287 61698190 -90839069 - L1_Mus4 LINE L1 -51 6585 5657 2 1055 289 58 19 19 chr5 61698197 61698250 -90839009 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 2 1055 30 45 0 0 chr5 61698716 61698760 -90838499 + AT_rich Low_complexity Low_complexity 1 44 0 2 1055 324 0 0 0 chr5 61698871 61698907 -90838352 + (TA)n Simple_repeat Simple_repeat 1 36 0 2 1055 294 29 0 0 chr5 61698994 61699029 -90838230 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 1055 41133 5 0 0 chr5 61699030 61705200 -90832059 - L1Md_A LINE L1 -1 6581 411 2 1055 190 260 60 83 chr5 61706625 61706709 -90830550 + L3 LINE CR1 3305 3386 -1103 2 1055 1398 283 13 16 chr5 61707861 61708249 -90829010 + Lx6 LINE L1 7048 7434 -26 2 1055 447 170 0 0 chr5 61708524 61708624 -90828635 + (CA)n Simple_repeat Simple_repeat 2 101 0 2 1055 23 68 0 0 chr5 61708664 61708708 -90828551 + AT_rich Low_complexity Low_complexity 1 44 0 2 1055 216 214 294 12 chr5 61708965 61709050 -90828209 - B1F SINE Alu -2 147 39 2 1055 1980 291 101 20 chr5 61709290 61710036 -90827223 - Lx6 LINE L1 -25 7435 6630 2 1055 755 200 75 16 chr5 61710036 61710241 -90827018 - RLTR13C1 LTR ERVK 0 1033 828 2 1055 3379 76 7 0 chr5 61710241 61710702 -90826557 - L1_Mm LINE L1 -1244 4639 4176 2 1055 772 95 35 0 chr5 61710701 61710817 -90826442 + L1_Mus1 LINE L1 6396 6515 -52 2 1055 506 101 11 11 chr5 61710833 61710923 -90826336 - MT-int LTR MaLR -118 980 891 2 1055 2991 143 41 32 chr5 61710920 61711533 -90825726 - RLTR13C1 LTR ERVK -237 877 1 2 1055 3219 250 57 57 chr5 61711533 61712581 -90824678 - Lx6 LINE L1 -825 6635 5588 2 1055 997 278 20 97 chr5 61712613 61713016 -90824243 - RLTR20B3 LTR ERVK -185 392 21 2 1055 340 208 9 9 chr5 61713806 61713913 -90823346 + (TG)n Simple_repeat Simple_repeat 2 108 0 2 1055 332 327 68 32 chr5 61713914 61714195 -90823064 - B4 SINE B4 0 292 2 2 1055 390 370 79 20 chr5 61714591 61714845 -90822414 + B4A SINE B4 18 286 -6 2 1055 236 309 0 0 chr5 61715144 61715228 -90822031 + Lx7 LINE L1 7595 7678 -18 2 1055 819 229 64 37 chr5 61715336 61715554 -90821705 + MTD LTR MaLR 196 419 0 2 1055 288 0 0 0 chr5 61715638 61715670 -90821589 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 1055 23 0 0 0 chr5 61717104 61717127 -90820132 + AT_rich Low_complexity Low_complexity 1 23 0 2 1055 4321 181 53 19 chr5 61717433 61718141 -90819118 + Lx2B LINE L1 4943 5679 -198 2 1055 3480 18 2 0 chr5 61718141 61718536 -90818723 - MTA_Mm LTR MaLR 0 396 1 2 1055 4321 174 30 38 chr5 61718536 61719259 -90818000 + Lx2B LINE L1 5680 6409 -591 2 1055 1508 244 0 37 chr5 61719246 61719625 -90817634 + Lx2B LINE L1 6630 6994 -6 2 1055 231 344 99 0 chr5 61720282 61720433 -90816826 + MLT1B LTR MaLR 212 377 -13 2 1055 369 0 0 0 chr5 61721816 61721857 -90815402 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1055 1036 74 7 0 chr5 61722009 61722158 -90815101 + L1Md_F2 LINE L1 6433 6582 0 2 1055 2561 23 2 274 chr5 61722742 61723278 -90813981 - RLTR10 LTR ERVK 0 390 1 2 1055 8623 15 10 1 chr5 61723280 61724266 -90812993 - RLTR10-int LTR ERVK -3 1984 990 2 1055 7896 26 0 0 chr5 61724360 61725273 -90811986 - RLTR10-int LTR ERVK -1034 953 41 2 1055 2521 23 4 275 chr5 61725283 61725818 -90811441 - RLTR10 LTR ERVK 0 390 1 2 1055 1060 281 60 89 chr5 61726805 61727189 -90810070 - Lx7 LINE L1 0 7696 7312 2 1055 261 0 0 0 chr5 61727189 61727218 -90810041 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1055 1069 68 0 0 chr5 61727224 61727357 -90809902 + B1_Mus1 SINE Alu 4 136 -12 2 1055 198 0 0 0 chr5 61727357 61727379 -90809880 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2 1055 1060 281 60 89 chr5 61727379 61727572 -90809687 - Lx7 LINE L1 -385 7311 7129 2 1055 2344 255 103 14 chr5 61727624 61728277 -90808982 + Lx7 LINE L1 6183 6893 -803 2 1055 256 331 77 7 chr5 61729871 61730014 -90807245 + MIR SINE MIR 78 230 -32 2 1055 2694 188 91 101 chr5 61730606 61731498 -90805761 - RLTR13D6 LTR ERVK -19 883 1 3 1055 2902 66 200 9 chr5 61731850 61732280 -90804979 - RLTR1B LTR ERV1 0 512 1 3 1055 408 20 0 0 chr5 61732330 61732379 -90804880 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1055 252 0 0 0 chr5 61732806 61732834 -90804425 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3 1055 216 0 0 0 chr5 61732900 61732924 -90804335 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1055 248 211 13 0 chr5 61733220 61733296 -90803963 + CT-rich Low_complexity Low_complexity 2 78 0 3 1055 215 378 67 84 chr5 61733455 61733634 -90803625 - B4A SINE B4 -114 178 3 3 1055 25 51 0 0 chr5 61734678 61734717 -90802542 + AT_rich Low_complexity Low_complexity 1 39 0 3 1056 283 108 0 0 chr5 61735836 61735873 -90801386 + Lx8 LINE L1 6685 6721 -752 3 1056 43 35 0 0 chr5 61737276 61737333 -90799926 + AT_rich Low_complexity Low_complexity 1 57 0 3 1056 4081 229 24 31 chr5 61737520 61738434 -90798825 - RMER13B LTR ERVK 0 908 1 3 1056 628 76 0 9 chr5 61739407 61739513 -90797746 + L1_Mus4 LINE L1 6527 6631 -5 3 1056 227 346 29 10 chr5 61740042 61740144 -90797115 + LTR83 LTR ERVL 223 326 -454 3 1056 222 376 11 0 chr5 61740660 61740753 -90796506 - MIR SINE MIR -122 140 47 3 1056 216 67 0 0 chr5 61741229 61741259 -90796000 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 3 1056 378 0 0 0 chr5 61742138 61742180 -90795079 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 1056 267 211 45 18 chr5 61742424 61742535 -90794724 + (TTTG)n Simple_repeat Simple_repeat 1 114 0 3 1056 211 316 0 10 chr5 61742499 61742598 -90794661 + (TG)n Simple_repeat Simple_repeat 1 98 0 3 1056 710 211 77 16 chr5 61743202 61743385 -90793874 + RMER6D LTR ERVK 1 194 -526 3 1056 9880 56 2 3 chr5 61743385 61744635 -90792624 + L1_Mm LINE L1 4337 5586 -297 3 1056 7894 52 2 0 chr5 61744635 61745615 -90791644 + L1Md_F2 LINE L1 5588 6569 -13 3 1056 2227 226 46 23 chr5 61745645 61746165 -90791094 + RMER6D LTR ERVK 189 720 0 3 1056 991 300 99 42 chr5 61747411 61747543 -90789716 - Lx9 LINE L1 0 7644 7517 3 1056 279 0 0 0 chr5 61747543 61747574 -90789685 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 1056 991 300 99 42 chr5 61747574 61747786 -90789473 - Lx9 LINE L1 -128 7516 7267 3 1056 1885 191 14 72 chr5 61747786 61748204 -90789055 - ORR1B1 LTR MaLR 0 394 1 3 1056 991 300 99 42 chr5 61748204 61748426 -90788833 - Lx9 LINE L1 -378 7266 7046 3 1056 321 174 57 14 chr5 61748455 61748525 -90788734 + Lx9 LINE L1 6810 6882 -762 3 1056 15347 59 114 1 chr5 61748793 61750917 -90786342 + L1Md_F3 LINE L1 3221 5586 -297 3 1056 7868 53 4 4 chr5 61750917 61751901 -90785358 + L1Md_F3 LINE L1 5587 6570 -14 3 1056 2283 113 11 14 chr5 61751979 61752328 -90784931 + Lx LINE L1 6302 6649 -5 3 1056 360 0 0 0 chr5 61752329 61752369 -90784890 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 3 1056 271 405 33 0 chr5 61752634 61752787 -90784472 + MIRc SINE MIR 7 164 -104 3 1056 340 259 260 15 chr5 61754566 61754762 -90782497 - Lx9 LINE L1 -355 7289 7046 3 1056 224 59 0 29 chr5 61754961 61754996 -90782263 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 1056 195 100 0 0 chr5 61754996 61755026 -90782233 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1056 21 0 0 0 chr5 61755112 61755133 -90782126 + AT_rich Low_complexity Low_complexity 1 21 0 3 1056 21 57 0 0 chr5 61757181 61757216 -90780043 + AT_rich Low_complexity Low_complexity 1 35 0 3 1056 781 331 29 13 chr5 61757309 61757621 -90779638 - MER67D LTR ERV1 -197 317 1 3 1056 459 0 0 0 chr5 61758237 61758288 -90778971 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1056 228 246 15 0 chr5 61758311 61758376 -90778883 + CT-rich Low_complexity Low_complexity 1 66 0 3 1056 1337 341 24 21 chr5 61758493 61759116 -90778143 - Lx8 LINE L1 -384 7089 6465 3 1056 371 389 84 84 chr5 61759745 61760000 -90777259 - MTE-int LTR MaLR -45 1535 1285 3 1056 557 349 9 5 chr5 61760000 61760213 -90777046 + B3 SINE B2 3 216 0 3 1056 371 389 84 84 chr5 61760213 61760723 -90776536 - MTE-int LTR MaLR -296 1284 770 3 1056 1615 178 11 28 chr5 61761604 61761919 -90775340 + RLTR10E LTR ERVK 1 358 -9 3 1056 35 24 0 0 chr5 61762308 61762350 -90774909 + AT_rich Low_complexity Low_complexity 1 42 0 3 1056 806 148 73 18 chr5 61763048 61763213 -90774046 - Lx2 LINE L1 -1 6996 6823 3 1056 340 339 109 23 chr5 61763275 61763577 -90773682 - MER57C2 LTR ERV1 0 411 76 3 1056 22 35 0 0 chr5 61764670 61764699 -90772560 + AT_rich Low_complexity Low_complexity 1 29 0 3 1056 13742 172 13 11 chr5 61764866 61766204 -90771055 + Lx LINE L1 3280 4630 -1253 3 1056 221 0 35 0 chr5 61766204 61766233 -90771026 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 1056 13742 138 12 19 chr5 61766233 61768270 -90768989 + Lx LINE L1 4631 6654 0 3 1056 1132 232 46 8 chr5 61768304 61768565 -90768694 + RMER12 LTR ERVK 1 271 -1051 3 1056 236 78 6 0 chr5 61768565 61768606 -90768653 - RMER19B LTR ERVK 0 902 872 3 1056 444 82 0 0 chr5 61768646 61768707 -90768552 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1056 860 241 191 24 chr5 61768709 61769002 -90768257 + RMER12 LTR ERVK 835 1176 -146 3 1056 928 295 78 40 chr5 61769162 61769508 -90767751 - Lx6 LINE L1 -58 7402 7044 3 1056 1970 224 113 2 chr5 61769532 61770020 -90767239 + Lx6 LINE L1 6498 7039 -421 3 1056 233 398 32 32 chr5 61770326 61770513 -90766746 - MIR SINE MIR -44 218 32 3 1056 591 186 71 7 chr5 61770736 61770877 -90766382 - Lx3C LINE L1 -2 6974 6825 3 1056 2480 161 0 2 chr5 61770878 61771271 -90765988 + Lx3C LINE L1 6291 6682 -294 3 1056 711 348 65 38 chr5 61771626 61772164 -90765095 - Lx6 LINE L1 -6 7044 6507 3 1056 300 230 0 0 chr5 61773292 61773379 -90763880 - Lx9 LINE L1 -6 7638 7552 3 1056 227 238 25 12 chr5 61773402 61773418 -90763841 - Lx9 LINE L1 -152 7492 7478 3 1056 420 97 0 0 chr5 61773418 61773480 -90763779 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1056 227 238 25 12 chr5 61773480 61773544 -90763715 - Lx9 LINE L1 -167 7477 7412 3 1056 25 31 0 0 chr5 61774389 61774421 -90762838 + AT_rich Low_complexity Low_complexity 1 32 0 3 1056 1055 289 91 9 chr5 61774448 61774867 -90762392 + Lx8 LINE L1 6801 7253 -220 3 1056 228 35 0 0 chr5 61775002 61775031 -90762228 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 3 1056 552 340 80 54 chr5 61775239 61775687 -90761572 + Lx7 LINE L1 6146 6605 -1091 3 1056 805 292 85 18 chr5 61776245 61776587 -90760672 - Lx8 LINE L1 -720 6753 6389 3 1056 654 335 69 17 chr5 61776587 61776936 -90760323 + Lx8 LINE L1 6886 7252 -221 3 1056 257 292 85 14 chr5 61777166 61777378 -90759881 + L1MC LINE L1 2122 2348 -3798 3 1056 369 43 0 0 chr5 61780032 61780079 -90757180 + (ATTG)n Simple_repeat Simple_repeat 2 48 0 3 1056 4316 137 10 10 chr5 61780107 61780827 -90756432 + Lx LINE L1 5935 6654 0 3 1056 234 247 0 0 chr5 61781648 61781725 -90755534 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1056 217 0 61 0 chr5 61783241 61783274 -90753985 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 1056 1064 64 7 0 chr5 61783288 61783429 -90753830 - B1_Mus1 SINE Alu -1 147 6 3 1056 303 28 0 0 chr5 61784337 61784373 -90752886 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1056 477 0 0 0 chr5 61784373 61784425 -90752834 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1056 2153 48 14 4 chr5 61784439 61784714 -90752545 - L1Md_A LINE L1 -1 6581 6304 3 1056 201 147 0 0 chr5 61785391 61785425 -90751834 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1056 2101 82 56 70 chr5 61786194 61786549 -90750710 - MTB_Mm LTR MaLR -55 352 3 3 1056 240 86 0 0 chr5 61786826 61786861 -90750398 + (TATG)n Simple_repeat Simple_repeat 4 38 0 3 1056 207 100 0 0 chr5 61786881 61786911 -90750348 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 3 1056 246 32 0 0 chr5 61786913 61786944 -90750315 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 1056 234 183 0 0 chr5 61786979 61787050 -90750209 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 3 1056 345 24 0 0 chr5 61787278 61787320 -90749939 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3 1056 698 59 59 0 chr5 61787326 61787428 -90749831 + B1_Mm SINE Alu 40 147 0 3 1056 997 87 37 6 chr5 61787437 61787599 -90749660 - L1_Mus3 LINE L1 -15 6623 6457 3 1056 6540 103 4 2 chr5 61787599 61788816 -90748443 + L1_Mus3 LINE L1 5271 6488 -148 3 1056 7637 85 5 2 chr5 61788994 61790663 -90746596 + L1_Mus1 LINE L1 4938 6567 0 3 1056 339 173 13 0 chr5 61790707 61790782 -90746477 - Lx2 LINE L1 -3 6994 6919 3 1056 988 153 47 51 chr5 61790818 61791032 -90746227 - Lx3A LINE L1 -7 6974 6762 3 1056 5938 139 28 14 chr5 61791097 61792133 -90745126 - Lx3A LINE L1 -7 6974 5924 3 1056 276 30 0 0 chr5 61792221 61792254 -90745005 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1056 274 362 0 0 chr5 61792266 61792360 -90744899 - Lx7 LINE L1 -971 6725 6632 3 1056 3233 146 81 37 chr5 61792447 61793152 -90744107 - RMER17A LTR ERVK -15 736 1 3 1056 1487 272 51 45 chr5 61793155 61793641 -90743618 + Lx6 LINE L1 6945 7433 -27 3 1056 22 56 0 0 chr5 61794303 61794339 -90742920 + AT_rich Low_complexity Low_complexity 1 36 0 3 1056 22 0 0 0 chr5 61794461 61794483 -90742776 + AT_rich Low_complexity Low_complexity 1 22 0 3 1056 239 375 75 19 chr5 61794541 61794647 -90742612 - ID_B1 SINE B4 -34 190 79 3 1056 24 0 0 0 chr5 61794648 61794672 -90742587 + AT_rich Low_complexity Low_complexity 1 24 0 3 1056 1371 251 52 47 chr5 61794686 61795006 -90742253 - RMER6D LTR ERVK 0 720 397 3 1056 935 6 79 0 chr5 61795006 61795170 -90742089 + (CA)n Simple_repeat Simple_repeat 1 177 0 3 1056 1371 251 52 47 chr5 61795170 61795296 -90741963 - RMER6D LTR ERVK -324 396 272 3 1056 379 292 0 50 chr5 61795274 61795375 -90741884 - B3A SINE B2 -102 96 1 3 1056 267 242 0 0 chr5 61795646 61795745 -90741514 + GA-rich Low_complexity Low_complexity 1 99 0 3 1056 4154 168 39 13 chr5 61796047 61796835 -90740424 - Lx2 LINE L1 -2 6995 6187 3 1056 521 296 24 24 chr5 61797115 61797323 -90739936 + B3 SINE B2 2 209 -7 3 1056 447 19 0 0 chr5 61798508 61798560 -90738699 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1056 325 302 10 20 chr5 61799092 61799190 -90738069 + Lx9 LINE L1 7113 7209 -435 3 1056 495 0 0 0 chr5 61799257 61799312 -90737947 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1056 330 376 21 11 chr5 61799346 61799534 -90737725 - Lx7 LINE L1 -430 7266 7077 4 1056 243 0 0 0 chr5 61800071 61800098 -90737161 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 4 1056 1045 161 0 0 chr5 61800098 61800259 -90737000 - B2_Mm2 SINE B2 -34 161 1 4 1056 524 310 85 11 chr5 61800282 61800471 -90736788 - B3 SINE B2 -5 211 9 4 1056 422 285 125 0 chr5 61801199 61801343 -90735916 + RSINE1 SINE B4 4 165 0 4 1056 225 371 23 68 chr5 61801679 61801812 -90735447 - MLT1B LTR MaLR -32 358 232 4 1056 27 29 0 0 chr5 61802091 61802125 -90735134 + AT_rich Low_complexity Low_complexity 1 34 0 4 1056 1362 142 91 4 chr5 61802147 61802401 -90734858 + Lx3A LINE L1 6699 6974 -7 4 1056 2751 118 12 2 chr5 61802659 61803084 -90734175 - L1_Mus3 LINE L1 0 6638 6210 4 1056 325 358 36 22 chr5 61803390 61803527 -90733732 - L1M2 LINE L1 -1239 4904 4766 4 1056 232 48 23 23 chr5 61803603 61803646 -90733613 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 1056 1830 238 43 45 chr5 61804477 61804643 -90732616 - RLTR19 LTR ERVK 0 499 319 4 1056 453 122 0 0 chr5 61804643 61804717 -90732542 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1056 1830 238 43 45 chr5 61804717 61805042 -90732217 - RLTR19 LTR ERVK -181 318 11 4 1056 619 110 162 20 chr5 61805271 61805438 -90731821 + RMER6C LTR ERVK 110 333 -357 4 1056 1749 201 3 12 chr5 61805443 61805780 -90731479 - L1_Mur3 LINE L1 -194 5683 5350 4 1056 681 287 33 54 chr5 61805958 61806293 -90730966 - Lx7 LINE L1 0 7696 7369 4 1056 1978 92 4 0 chr5 61806480 61806752 -90730507 + L1_Mus1 LINE L1 6293 6565 -2 4 1056 3136 220 77 45 chr5 61807041 61807709 -90729550 - L1_Mur3 LINE L1 -1229 4651 3962 4 1056 2497 152 7 0 chr5 61807709 61808150 -90729109 - Lx2A1 LINE L1 0 7008 6565 4 1056 3136 220 77 45 chr5 61808150 61808376 -90728883 - L1_Mur3 LINE L1 -1919 3961 3750 4 1056 3237 106 4 2 chr5 61808376 61808848 -90728411 - L1_Mus2 LINE L1 0 6566 6094 4 1056 3136 220 77 45 chr5 61808848 61808928 -90728331 - L1_Mur3 LINE L1 -2131 3749 3645 4 1056 510 213 33 0 chr5 61809524 61809646 -90727613 - L1_Mur3 LINE L1 -2231 3649 3524 4 1056 448 208 18 2 chr5 61809681 61809777 -90727482 + B1_Mus1 SINE Alu 1 104 -43 4 1056 604 162 8 0 chr5 61809777 61809894 -90727365 - Lx3C LINE L1 -760 6216 6099 4 1056 1952 172 27 108 chr5 61809898 61809952 -90727307 + L1_Mur1 LINE L1 5139 5191 -695 4 1056 207 0 0 0 chr5 61809952 61809975 -90727284 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1056 1952 172 27 108 chr5 61809975 61810436 -90726823 + L1_Mur1 LINE L1 5192 5611 -275 4 1056 347 278 102 54 chr5 61811508 61811713 -90725546 + L1MD LINE L1 2749 2963 -3183 4 1056 229 186 0 0 chr5 61812397 61812440 -90724819 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 4 1056 349 26 0 0 chr5 61812444 61812483 -90724776 + L1Md_F2 LINE L1 5547 5585 -298 4 1056 8056 45 6 0 chr5 61812484 61813473 -90723786 + L1Md_F2 LINE L1 5587 6581 -1 4 1056 354 154 0 0 chr5 61813473 61813551 -90723708 + GA-rich Low_complexity Low_complexity 1 78 0 4 1056 239 117 0 32 chr5 61814200 61814262 -90722997 - L1Md_F2 LINE L1 -2 6580 6521 4 1056 1140 82 0 0 chr5 61815046 61815193 -90722066 + B1_Mm SINE Alu 1 147 0 4 1056 1724 156 145 86 chr5 61816210 61816630 -90720629 - RLTR41 LTR ERV1 0 446 2 4 1056 706 229 157 9 chr5 61816748 61816977 -90720282 + Lx9 LINE L1 7201 7463 -181 4 1056 240 122 0 0 chr5 61816981 61817022 -90720237 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1056 310 237 25 17 chr5 61817022 61817142 -90720117 + Lx9 LINE L1 7518 7638 -6 4 1056 1148 284 23 13 chr5 61817337 61817644 -90719615 + Lx6 LINE L1 7125 7434 -26 4 1056 423 0 0 0 chr5 61819773 61819820 -90717439 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1056 189 0 0 0 chr5 61821273 61821294 -90715965 + (TA)n Simple_repeat Simple_repeat 2 22 0 4 1056 2538 288 97 15 chr5 61821294 61821637 -90715622 - Lx9 LINE L1 -228 7416 7035 4 1056 441 0 0 0 chr5 61821637 61821686 -90715573 + (TAA)n Simple_repeat Simple_repeat 1 49 0 4 1056 2538 288 97 15 chr5 61821686 61822411 -90714848 - Lx9 LINE L1 -610 7034 6260 4 1056 267 221 38 9 chr5 61822411 61822516 -90714743 + (TA)n Simple_repeat Simple_repeat 2 109 0 4 1056 687 282 153 8 chr5 61822618 61822879 -90714380 + MTD LTR MaLR 105 403 -16 4 1056 22 56 0 0 chr5 61823486 61823522 -90713737 + AT_rich Low_complexity Low_complexity 1 36 0 4 1056 1415 78 5 10 chr5 61824187 61824380 -90712879 - B2_Mm1t SINE B2 0 193 2 4 1056 195 184 0 0 chr5 61824796 61824834 -90712425 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1056 21 36 0 0 chr5 61827011 61827039 -90710220 + AT_rich Low_complexity Low_complexity 1 28 0 4 1056 243 345 0 50 chr5 61827087 61827206 -90710053 + BC1_Mm scRNA scRNA 19 131 -21 4 1056 912 128 17 47 chr5 61827839 61828011 -90709248 - B2_Mm2 SINE B2 -2 193 27 4 1056 5128 57 13 8 chr5 61828083 61828753 -90708506 - L1Md_F2 LINE L1 -11 6571 5898 4 1056 230 152 0 0 chr5 61828947 61828980 -90708279 - B2_Mm2 SINE B2 -155 40 8 4 1056 257 0 30 0 chr5 61829130 61829163 -90708096 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 4 1056 752 245 19 14 chr5 61829205 61829416 -90707843 + B3 SINE B2 3 214 -2 4 1056 270 81 0 0 chr5 61829447 61829484 -90707775 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1056 351 341 41 58 chr5 61829514 61829807 -90707452 - B4A SINE B4 -2 290 3 4 1056 261 0 0 0 chr5 61829819 61829848 -90707411 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1056 2994 264 15 24 chr5 61829862 61830669 -90706590 - Lx7 LINE L1 -178 7518 6719 4 1056 331 226 97 0 chr5 61831138 61831231 -90706028 - ORR1C1-int LTR MaLR -1032 477 376 4 1056 407 19 19 0 chr5 61831448 61831500 -90705759 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 4 1056 1557 185 3 76 chr5 61831507 61831863 -90705396 - Lx4A LINE L1 -27 7031 6702 4 1056 1149 112 34 0 chr5 61831872 61832051 -90705208 + Lx4A LINE L1 6520 6704 -354 4 1056 180 0 0 0 chr5 61832052 61832072 -90705187 + (CTTG)n Simple_repeat Simple_repeat 4 23 0 4 1056 198 0 0 0 chr5 61832072 61832093 -90705166 + (TTCC)n Simple_repeat Simple_repeat 1 22 0 4 1056 1205 96 6 0 chr5 61832093 61832271 -90704988 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 4 1056 421 62 0 30 chr5 61832273 61832340 -90704919 + (TTTTC)n Simple_repeat Simple_repeat 5 69 0 4 1056 4354 155 14 6 chr5 61832340 61833072 -90704187 - Lx2 LINE L1 0 6997 6260 4 1056 393 198 22 11 chr5 61833072 61833164 -90704095 - ORR1C1-int LTR MaLR -1410 99 7 4 1056 1356 226 118 0 chr5 61833171 61833503 -90703756 - ORR1C1 LTR MaLR 0 378 8 4 1056 253 267 142 0 chr5 61834212 61834332 -90702927 - Lx9 LINE L1 -8 7636 7500 4 1056 709 219 59 68 chr5 61834439 61834659 -90702600 + RMER1C Other Other 1124 1341 -1 4 1056 6927 111 35 25 chr5 61835112 61836288 -90700971 - Lx3A LINE L1 0 6981 5795 4 1056 254 188 43 0 chr5 61836726 61836816 -90700443 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 1056 467 284 98 52 chr5 61836845 61837131 -90700128 + L1MA7 LINE L1 5546 5844 -345 4 1056 429 36 0 0 chr5 61837139 61837194 -90700065 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1056 316 390 32 21 chr5 61837266 61837452 -90699807 - B4A SINE B4 -51 241 54 4 1056 234 0 0 0 chr5 61837463 61837489 -90699770 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1056 423 38 0 0 chr5 61837753 61837806 -90699453 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1056 249 219 47 0 chr5 61838765 61838829 -90698430 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 4 1056 675 262 51 5 chr5 61839176 61839391 -90697868 - L1_Mur3 LINE L1 -714 5166 4942 4 1056 3964 266 102 61 chr5 61839371 61839759 -90697500 - L1_Mur3 LINE L1 -1596 4284 3896 4 1056 1364 216 118 8 chr5 61839759 61840114 -90697145 + ORR1B1 LTR MaLR 1 394 0 4 1056 3964 266 102 61 chr5 61840114 61841845 -90695414 - L1_Mur3 LINE L1 -1985 3895 2082 4 1056 1909 154 10 0 chr5 61841845 61842157 -90695102 - Lx LINE L1 0 6654 6340 4 1056 3964 266 102 61 chr5 61842157 61842543 -90694716 - L1_Mur3 LINE L1 -3799 2081 1675 4 1056 6795 184 42 0 chr5 61843079 61844727 -90692532 + Lx3C LINE L1 5253 6972 -4 4 1056 366 23 0 0 chr5 61845373 61845416 -90691843 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 1056 531 269 208 40 chr5 61846397 61846710 -90690549 - MER57D LTR ERV1 -44 390 1 4 1056 231 269 38 13 chr5 61848518 61848597 -90688662 - MIR SINE MIR -63 199 119 4 1056 567 0 0 0 chr5 61849281 61849344 -90687915 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1056 368 229 52 22 chr5 61850729 61850863 -90686396 - Lx7 LINE L1 0 7696 7559 4 1056 348 313 5 43 chr5 61851352 61851539 -90685720 + CT-rich Low_complexity Low_complexity 1 180 0 4 1056 21 0 0 0 chr5 61851871 61851892 -90685367 + AT_rich Low_complexity Low_complexity 1 21 0 4 1056 612 214 36 76 chr5 61852000 61852209 -90685050 + URR1B DNA MER1_type 1 225 0 4 1056 23 0 0 0 chr5 61852391 61852414 -90684845 + AT_rich Low_complexity Low_complexity 1 23 0 4 1056 239 246 14 14 chr5 61853055 61853129 -90684130 + CT-rich Low_complexity Low_complexity 4 77 0 4 1056 1069 105 6 0 chr5 61853707 61853879 -90683380 - L1Md_F3 LINE L1 0 6584 6412 4 1056 1291 176 9 0 chr5 61853880 61854102 -90683157 + Lx2B LINE L1 6345 6568 -432 4 1056 22 56 0 0 chr5 61854109 61854145 -90683114 + AT_rich Low_complexity Low_complexity 1 36 0 4 1056 207 100 0 0 chr5 61854209 61854239 -90683020 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1056 207 267 0 0 chr5 61854302 61854347 -90682912 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1056 432 171 13 0 chr5 61854347 61854423 -90682836 - Lx2B LINE L1 -520 6480 6404 4 1056 228 135 0 0 chr5 61854426 61854463 -90682796 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 4 1056 211 216 0 0 chr5 61854473 61854524 -90682735 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 4 1056 372 152 0 0 chr5 61854546 61854612 -90682647 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1056 266 281 32 53 chr5 61854622 61854716 -90682543 - Lx7 LINE L1 -343 7353 7262 4 1056 5214 52 3 1 chr5 61854718 61855369 -90681890 - L1Md_F2 LINE L1 0 6582 5931 4 1056 5648 100 56 7 chr5 61855369 61856213 -90681046 + L1_Mus1 LINE L1 5682 6566 -1 4 1056 916 251 18 5 chr5 61856230 61856454 -90680805 - Lx7 LINE L1 -445 7251 7025 4 1056 5167 24 8 0 chr5 61856447 61857066 -90680193 - L1Md_T LINE L1 -1246 4637 4014 4 1056 1877 27 0 0 chr5 61857064 61857284 -90679975 + L1Md_T LINE L1 4657 4876 -1007 4 1056 7666 25 0 0 chr5 61857284 61858211 -90679048 - L1Md_A LINE L1 0 6582 5695 4 1056 7933 36 0 1 chr5 61858211 61859158 -90678101 + L1Md_T LINE L1 5637 6582 0 4 1056 24 53 0 0 chr5 61859232 61859270 -90677989 + AT_rich Low_complexity Low_complexity 1 38 0 4 1056 966 202 79 0 chr5 61859270 61859473 -90677786 - Lx7 LINE L1 -655 7041 6823 4 1056 1716 255 14 25 chr5 61859474 61859920 -90677339 + Lx2B LINE L1 6559 6999 -1 5 1056 4639 252 44 45 chr5 61859913 61861667 -90675592 + Lx7 LINE L1 5352 7117 -579 5 1056 413 209 43 17 chr5 61861669 61861786 -90675473 + Lx7 LINE L1 7370 7489 -207 5 1056 9214 97 13 2 chr5 61861781 61863789 -90673470 - L1_Mus2 LINE L1 0 6566 4536 5 1056 691 236 13 92 chr5 61863780 61864018 -90673241 + Lx7 LINE L1 7478 7696 0 5 1056 5154 129 9 10 chr5 61864168 61864975 -90672284 - L1_Mus4 LINE L1 -18 6618 5813 5 1056 190 353 81 17 chr5 61865032 61865205 -90672054 + MIR SINE MIR 22 205 -57 5 1057 27 62 0 0 chr5 61866508 61866556 -90670703 + AT_rich Low_complexity Low_complexity 1 48 0 5 1057 2925 185 56 99 chr5 61866598 61866966 -90670293 - RMER6D LTR ERVK -4 716 362 5 1057 3956 95 2 0 chr5 61866966 61867503 -90669756 + L1_Mus1 LINE L1 6016 6553 -14 5 1057 2925 185 56 99 chr5 61867503 61867882 -90669377 - RMER6D LTR ERVK -359 361 1 5 1057 520 324 11 39 chr5 61868007 61868187 -90669072 - B3A SINE B2 -4 194 20 5 1057 381 22 0 0 chr5 61869263 61869309 -90667950 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1057 935 185 85 0 chr5 61869309 61869498 -90667761 + Lx3C LINE L1 6770 6974 -2 5 1057 190 56 56 0 chr5 61869503 61869539 -90667720 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 1057 629 234 21 16 chr5 61870131 61870318 -90666941 + Lx7 LINE L1 7509 7696 0 5 1057 237 192 54 14 chr5 61870943 61871017 -90666242 - Lx9 LINE L1 -5 7639 7563 5 1057 630 39 0 0 chr5 61871063 61871140 -90666119 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1057 1527 163 7 47 chr5 61871965 61872261 -90664998 + RMER6C LTR ERVK 407 690 0 5 1057 1170 175 202 0 chr5 61872936 61873188 -90664071 + RMER6C LTR ERVK 4 306 -384 5 1057 1487 168 106 3 chr5 61873188 61873481 -90663778 + Lx2A1 LINE L1 6681 7003 -5 5 1057 842 137 7 0 chr5 61873514 61873660 -90663599 + (GA)n Simple_repeat Simple_repeat 2 148 0 5 1057 546 302 46 15 chr5 61873970 61874165 -90663094 - RLTR23 LTR ERV1 0 430 230 5 1057 518 237 8 25 chr5 61874343 61874464 -90662795 - RLTR23 LTR ERV1 -302 128 10 5 1057 598 358 62 54 chr5 61875547 61875937 -90661322 + LTR33A LTR ERVL 106 498 -22 5 1057 21 36 0 0 chr5 61876631 61876659 -90660600 + AT_rich Low_complexity Low_complexity 1 28 0 5 1057 26 64 0 0 chr5 61876934 61876981 -90660278 + AT_rich Low_complexity Low_complexity 1 47 0 5 1057 1004 191 73 5 chr5 61877128 61877333 -90659926 - URR1B DNA MER1_type 0 225 7 5 1057 711 0 0 0 chr5 61878992 61879071 -90658188 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 5 1057 2760 66 3 3 chr5 61879321 61879684 -90657575 + L1Md_F2 LINE L1 5223 5585 -298 5 1057 7616 64 2 6 chr5 61879685 61880685 -90656574 + L1Md_F2 LINE L1 5587 6582 0 5 1057 21 0 0 0 chr5 61880846 61880867 -90656392 + AT_rich Low_complexity Low_complexity 1 21 0 5 1057 3107 151 34 8 chr5 61880945 61881572 -90655687 - Lx3C LINE L1 -966 6010 5352 5 1057 4360 199 48 20 chr5 61881573 61882513 -90654746 + Lx3C LINE L1 6008 6973 -3 5 1057 1620 0 0 0 chr5 61883769 61883949 -90653310 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1057 243 284 23 16 chr5 61884944 61885073 -90652186 + L1MA6 LINE L1 6068 6197 -103 5 1057 427 413 5 27 chr5 61885129 61885353 -90651906 + B4 SINE B4 13 231 -61 5 1057 453 257 11 58 chr5 61886270 61886460 -90650799 + Lx7 LINE L1 7512 7692 -4 5 1057 652 147 15 0 chr5 61886846 61886982 -90650277 + (TCTA)n Simple_repeat Simple_repeat 4 141 0 5 1057 4141 172 24 9 chr5 61887929 61888687 -90648572 + Lx4A LINE L1 6284 7052 -6 5 1057 190 0 32 32 chr5 61888687 61888718 -90648541 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1057 1270 109 0 5 chr5 61890642 61890827 -90646432 + B2_Mm2 SINE B2 1 184 -11 5 1057 359 365 26 0 chr5 61891535 61891650 -90645609 - RSINE1 SINE B4 -41 124 7 5 1057 189 0 0 0 chr5 61892624 61892645 -90644614 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1057 21 71 0 0 chr5 61893370 61893412 -90643847 + AT_rich Low_complexity Low_complexity 1 42 0 5 1057 1317 68 0 0 chr5 61893934 61894596 -90642663 + (CA)n Simple_repeat Simple_repeat 1 662 0 5 1057 1169 41 0 0 chr5 61895103 61895250 -90642009 + B1_Mus2 SINE Alu 1 147 0 5 1057 320 266 224 65 chr5 61895267 61895481 -90641778 - Lx6 LINE L1 -44 7416 7169 5 1057 28 48 0 0 chr5 61896190 61896232 -90641027 + AT_rich Low_complexity Low_complexity 1 42 0 5 1057 23 0 0 0 chr5 61896262 61896285 -90640974 + AT_rich Low_complexity Low_complexity 1 23 0 5 1057 297 354 75 65 chr5 61896299 61896504 -90640755 - Lx8 LINE L1 -32 7441 7242 5 1057 1709 198 28 11 chr5 61896504 61896861 -90640398 + Lx2B LINE L1 6630 6992 -8 5 1057 297 354 75 65 chr5 61896861 61897178 -90640081 - Lx8 LINE L1 -232 7241 6914 5 1057 337 284 11 11 chr5 61897395 61897484 -90639775 - L2a LINE L2 0 3426 3338 5 1057 24 32 0 0 chr5 61898034 61898065 -90639194 + AT_rich Low_complexity Low_complexity 1 31 0 5 1057 343 293 59 4 chr5 61898089 61898204 -90639055 + B3A SINE B2 6 126 -69 5 1057 195 129 0 0 chr5 61898240 61898271 -90638988 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1057 454 333 54 24 chr5 61898613 61898934 -90638325 + ORR1E LTR MaLR 19 359 0 5 1057 245 333 25 83 chr5 61898893 61899014 -90638245 - MER76 LTR ERVL 0 691 578 5 1057 407 290 109 22 chr5 61899020 61899249 -90638010 + Lx9 LINE L1 7392 7640 -4 5 1057 238 26 51 0 chr5 61899816 61899855 -90637404 + (TTG)n Simple_repeat Simple_repeat 2 42 0 5 1057 6503 59 1 19 chr5 61899970 61900829 -90636430 + L1Md_F2 LINE L1 5739 6582 0 5 1057 1650 141 94 0 chr5 61902127 61902403 -90634856 - Lx3B LINE L1 -259 6714 6413 5 1057 891 157 172 44 chr5 61902402 61902454 -90634805 + Lx3B LINE L1 6712 6759 -214 5 1057 480 35 0 0 chr5 61902454 61902512 -90634747 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1057 891 157 172 44 chr5 61902512 61902686 -90634573 + Lx3B LINE L1 6760 6966 -7 5 1057 378 0 0 0 chr5 61902774 61902816 -90634443 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1057 2120 116 42 0 chr5 61902820 61903130 -90634129 - ORR1A2 LTR MaLR -2 325 3 5 1057 6258 143 40 7 chr5 61903132 61904165 -90633094 - ORR1A2-int LTR MaLR 0 1963 897 5 1057 13376 203 59 12 chr5 61904165 61907262 -90629997 - Lx4A LINE L1 -720 6338 3129 5 1057 222 37 0 0 chr5 61907262 61907289 -90629970 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1057 13376 222 62 10 chr5 61907289 61908108 -90629151 - Lx4A LINE L1 -2752 3128 2247 5 1057 4022 160 34 10 chr5 61908105 61908934 -90628325 + L1_Mur2 LINE L1 561 1415 -4462 5 1057 201 132 0 0 chr5 61909291 61909329 -90627930 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1057 466 219 55 47 chr5 61909393 61909553 -90627706 - MTD LTR MaLR -24 395 251 5 1057 30 27 0 0 chr5 61909567 61909604 -90627655 + AT_rich Low_complexity Low_complexity 1 37 0 5 1057 7203 78 14 1 chr5 61909604 61911099 -90626160 - L1Md_F2 LINE L1 -10 6572 5056 5 1057 925 208 39 0 chr5 61911107 61911314 -90625945 - Lx3A LINE L1 -7 6974 6760 5 1057 1055 119 6 6 chr5 61911319 61911855 -90625404 + (TCTA)n Simple_repeat Simple_repeat 1 559 -287 5 1057 537 203 0 0 chr5 61911855 61911893 -90625366 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 1057 1055 119 6 6 chr5 61911893 61912166 -90625093 + (TCTA)n Simple_repeat Simple_repeat 560 846 0 5 1057 537 198 5 0 chr5 61912166 61912367 -90624892 + (TA)n Simple_repeat Simple_repeat 1 202 0 5 1057 804 156 0 0 chr5 61912368 61912548 -90624711 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 5 1057 837 140 0 0 chr5 61912546 61912724 -90624535 + (TA)n Simple_repeat Simple_repeat 1 178 0 5 1057 533 241 6 12 chr5 61912726 61912894 -90624365 + (TATATG)n Simple_repeat Simple_repeat 4 170 0 5 1057 701 168 0 6 chr5 61912895 61912925 -90624334 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 1057 873 128 0 0 chr5 61912925 61913105 -90624154 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 5 1057 701 155 0 7 chr5 61913105 61913291 -90623968 + (TA)n Simple_repeat Simple_repeat 1 184 0 5 1057 942 112 0 0 chr5 61913291 61913469 -90623790 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 5 1057 332 104 0 15 chr5 61913469 61913500 -90623759 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1057 2358 101 6 3 chr5 61913502 61913851 -90623408 - Lx3A LINE L1 -336 6645 6296 5 1057 2359 244 50 23 chr5 61913940 61914560 -90622699 + Lx5 LINE L1 6133 6769 -281 5 1057 740 338 30 48 chr5 61914830 61915147 -90622112 + MTE2a LTR MaLR 63 419 -2 5 1057 664 249 167 54 chr5 61915368 61915697 -90621562 - ORR1C2 LTR MaLR 0 384 3 5 1057 229 272 17 134 chr5 61915772 61915891 -90621368 + Lx8 LINE L1 6361 6465 -1008 5 1057 1409 178 52 19 chr5 61916012 61916321 -90620938 - Lx2 LINE L1 -4 6993 6675 5 1057 407 377 54 35 chr5 61916530 61917009 -90620250 + Lx8 LINE L1 6680 7167 -306 5 1057 488 111 12 0 chr5 61917247 61917328 -90619931 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1057 25 65 0 0 chr5 61917399 61917445 -90619814 + AT_rich Low_complexity Low_complexity 1 46 0 5 1057 25045 109 27 4 chr5 61917546 61923254 -90614005 - L1Md_F2 LINE L1 -2 6580 382 5 1057 22 0 0 0 chr5 61923261 61923283 -90613976 + AT_rich Low_complexity Low_complexity 1 22 0 5 1057 527 318 41 10 chr5 61925157 61925354 -90611905 - Lx8 LINE L1 -210 7263 7061 5 1057 685 384 50 30 chr5 61925351 61926052 -90611207 - Lx8 LINE L1 -589 6884 6170 5 1057 309 221 12 0 chr5 61926060 61926146 -90611113 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 1057 517 161 22 22 chr5 61926150 61926328 -90610931 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 5 1057 248 236 11 0 chr5 61926405 61926494 -90610765 + (TA)n Simple_repeat Simple_repeat 2 91 0 5 1057 384 136 34 0 chr5 61926569 61926657 -90610602 + (TA)n Simple_repeat Simple_repeat 1 91 0 5 1057 330 26 0 0 chr5 61926657 61926696 -90610563 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1057 618 109 0 0 chr5 61926832 61926924 -90610335 + (TA)n Simple_repeat Simple_repeat 1 92 0 5 1057 16169 32 1 0 chr5 61926927 61929549 -90607710 - L1Md_T LINE L1 -1 6581 3958 5 1057 1053 282 126 3 chr5 61932314 61932648 -90604611 + Lx6 LINE L1 6907 7281 -179 5 1057 1107 198 28 28 chr5 61932675 61932924 -90604335 - Lx3C LINE L1 -4 6969 6721 5 1057 8130 41 1 1 chr5 61932923 61934125 -90603134 - L1Md_F2 LINE L1 -12 6570 5369 5 1057 347 78 0 19 chr5 61934115 61934167 -90603092 + L1Md_A LINE L1 932 982 -5742 5 1057 1545 226 86 79 chr5 61934167 61934465 -90602794 - Lx3C LINE L1 -242 6734 6409 5 1057 1438 60 40 0 chr5 61934465 61934664 -90602595 - L1_Mus1 LINE L1 -1 6566 6360 5 1057 1545 226 86 79 chr5 61934664 61934933 -90602326 - Lx3C LINE L1 -568 6408 6163 5 1057 232 241 36 36 chr5 61935054 61935222 -90602037 + (TTATA)n Simple_repeat Simple_repeat 5 172 0 6 1057 22 35 0 0 chr5 61935232 61935261 -90601998 + AT_rich Low_complexity Low_complexity 1 29 0 6 1057 27 29 0 0 chr5 61936711 61936745 -90600514 + AT_rich Low_complexity Low_complexity 1 34 0 6 1057 36 0 0 0 chr5 61936807 61936843 -90600416 + AT_rich Low_complexity Low_complexity 1 36 0 6 1057 395 358 62 72 chr5 61937537 61937745 -90599514 - B3A SINE B2 -1 215 10 6 1057 180 111 0 0 chr5 61938930 61938957 -90598302 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1057 222 243 0 0 chr5 61940540 61940643 -90596616 + GA-rich Low_complexity Low_complexity 2 104 0 6 1057 2890 104 29 9 chr5 61940741 61941188 -90596071 + Lx3A LINE L1 6516 6971 -10 6 1057 1503 304 7 58 chr5 61941667 61942019 -90595240 - MTD LTR MaLR -8 411 73 6 1057 5129 88 7 6 chr5 61942019 61942736 -90594523 - L1_Mus1 LINE L1 -2 6565 5848 6 1057 1503 304 7 58 chr5 61942736 61942816 -90594443 - MTD LTR MaLR -347 72 1 6 1057 1706 148 93 89 chr5 61943116 61943589 -90593670 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1057 369 344 68 53 chr5 61943696 61943902 -90593357 - B3 SINE B2 -6 210 2 6 1057 24 32 0 0 chr5 61944210 61944241 -90593018 + AT_rich Low_complexity Low_complexity 1 31 0 6 1057 21 89 0 0 chr5 61945364 61945420 -90591839 + AT_rich Low_complexity Low_complexity 1 56 0 6 1057 28 29 0 0 chr5 61945480 61945515 -90591744 + AT_rich Low_complexity Low_complexity 1 35 0 6 1057 2831 115 0 14 chr5 61945820 61946253 -90591006 + L1_Mus4 LINE L1 6209 6635 -1 6 1057 255 336 83 90 chr5 61946673 61946817 -90590442 + RSINE1 SINE B4 2 144 -21 6 1057 471 182 0 0 chr5 61946883 61947004 -90590255 + (CA)n Simple_repeat Simple_repeat 1 121 0 6 1057 344 206 26 52 chr5 61947004 61947081 -90590178 + HAL1-3A_ME LINE L1 1976 2050 -808 6 1057 1317 269 80 6 chr5 61949013 61949147 -90588112 - Lx9 LINE L1 -11 7633 7488 6 1057 378 0 0 0 chr5 61949147 61949189 -90588070 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1057 1317 269 80 6 chr5 61949189 61949552 -90587707 - Lx9 LINE L1 -157 7487 7100 6 1057 704 327 41 19 chr5 61950789 61951104 -90586155 - Lx9 LINE L1 -922 6722 6401 6 1057 772 185 11 6 chr5 61951104 61951187 -90586072 + polypyrimidine Low_complexity Low_complexity 91 175 0 6 1057 1146 84 6 22 chr5 61951187 61951370 -90585889 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 6 1057 772 192 7 4 chr5 61951370 61951510 -90585749 + polypyrimidine Low_complexity Low_complexity 1 140 0 6 1057 396 192 82 0 chr5 61951511 61951657 -90585602 + CT-rich Low_complexity Low_complexity 1 158 0 6 1057 301 299 106 33 chr5 61951662 61951851 -90585408 - HAL1-3A_ME LINE L1 -419 2439 2285 6 1057 189 0 0 0 chr5 61951856 61951877 -90585382 + (CCCCCT)n Simple_repeat Simple_repeat 5 25 0 6 1057 1211 86 6 0 chr5 61951877 61952051 -90585208 + (TTCCC)n Simple_repeat Simple_repeat 4 178 0 6 1057 620 181 103 23 chr5 61952064 61952239 -90585020 - Lx LINE L1 -2 6652 6464 6 1057 1435 96 5 14 chr5 61952239 61952450 -90584809 + RLTR13B1 LTR ERVK 685 893 0 6 1057 288 20 40 20 chr5 61953461 61953511 -90583748 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 1057 1280 207 129 182 chr5 61954372 61954489 -90582770 - RMER6C LTR ERVK -102 588 478 6 1057 1440 0 0 0 chr5 61954489 61954649 -90582610 + (TTC)n Simple_repeat Simple_repeat 3 162 0 6 1057 1280 207 129 182 chr5 61954649 61954663 -90582596 - RMER6C LTR ERVK -213 477 477 6 1057 198 0 0 0 chr5 61954663 61954685 -90582574 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 6 1057 917 83 0 0 chr5 61954689 61954822 -90582437 - L1_Mus2 LINE L1 -1 6565 6433 6 1057 1280 207 129 182 chr5 61954822 61955305 -90581954 - RMER6C LTR ERVK -213 477 1 6 1057 696 294 43 0 chr5 61955305 61955488 -90581771 + MTD LTR MaLR 41 231 -188 6 1057 308 262 78 0 chr5 61955944 61956047 -90581212 + RMER12 LTR ERVK 726 836 -486 6 1057 506 294 96 5 chr5 61956928 61957116 -90580143 - B3 SINE B2 -6 210 6 6 1057 240 186 17 17 chr5 61958466 61958526 -90578733 + (TTTA)n Simple_repeat Simple_repeat 3 62 0 6 1057 31 82 0 0 chr5 61959780 61959853 -90577406 + AT_rich Low_complexity Low_complexity 1 73 0 6 1057 201 74 0 0 chr5 61959903 61959930 -90577329 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 6 1057 6118 82 15 0 chr5 61960170 61961371 -90575888 + L1Md_F2 LINE L1 5027 6247 -335 6 1057 360 0 0 0 chr5 61961680 61961720 -90575539 + (TC)n Simple_repeat Simple_repeat 1 40 0 6 1057 276 195 25 42 chr5 61961720 61961838 -90575421 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 6 1057 291 28 0 0 chr5 61961861 61961897 -90575362 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 6 1057 26 30 0 0 chr5 61962046 61962079 -90575180 + AT_rich Low_complexity Low_complexity 1 33 0 6 1057 252 224 0 39 chr5 61962136 61962187 -90575072 + B3A SINE B2 8 56 -142 6 1057 25 65 0 0 chr5 61962189 61962235 -90575024 + AT_rich Low_complexity Low_complexity 1 46 0 6 1057 776 209 98 6 chr5 61962415 61962598 -90574661 + Lx2B LINE L1 6788 6987 -13 6 1057 5860 230 36 25 chr5 61963338 61964484 -90572775 - Lx5 LINE L1 -3 7047 5885 6 1057 402 57 0 0 chr5 61964484 61964537 -90572722 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1057 318 26 0 0 chr5 61964537 61964575 -90572684 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1057 5860 230 36 25 chr5 61964575 61964836 -90572423 - Lx5 LINE L1 -1166 5884 5624 6 1057 1209 161 84 4 chr5 61964858 61965095 -90572164 - L1_Mur2 LINE L1 -3495 2382 2127 6 1057 309 185 0 15 chr5 61965103 61965169 -90572090 + L1_Mur2 LINE L1 4300 4364 -1513 6 1057 888 250 31 8 chr5 61965174 61965432 -90571827 - L1_Mur2 LINE L1 -5922 1164 901 6 1057 5110 252 56 46 chr5 61965988 61966778 -90570481 - Lx5 LINE L1 -7 7043 6286 6 1057 1807 120 11 105 chr5 61966778 61967140 -90570119 - ORR1A4 LTR MaLR 0 329 2 6 1057 5110 244 38 24 chr5 61967140 61967869 -90569390 - Lx5 LINE L1 -765 6285 5504 6 1057 4154 175 32 77 chr5 61968105 61969244 -90568015 + L1VL2 LINE L1 96 1152 -2463 6 1057 3292 158 7 2 chr5 61969259 61969844 -90567415 + Lx2B LINE L1 3587 4174 -1703 6 1057 3212 76 0 0 chr5 61969839 61970334 -90566925 - L1_Mus1 LINE L1 -645 5922 5428 6 1057 1876 80 0 0 chr5 61970338 61970588 -90566671 + L1_Mus1 LINE L1 6318 6567 0 6 1057 9962 146 19 7 chr5 61970596 61972292 -90564967 + L1_Mm LINE L1 4166 5883 0 6 1057 2847 121 7 18 chr5 61972318 61972773 -90564486 + L1_Mus3 LINE L1 6182 6631 -7 6 1057 427 95 32 0 chr5 61972930 61972993 -90564266 + B1_Mus2 SINE Alu 70 134 -13 6 1057 291 28 0 0 chr5 61972995 61973031 -90564228 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 6 1057 1931 184 25 3 chr5 61974304 61974631 -90562628 - Lx4A LINE L1 -121 6937 6604 6 1057 5577 154 13 33 chr5 61974642 61975699 -90561560 + Lx2B LINE L1 4878 5919 -1139 6 1057 306 0 0 0 chr5 61976428 61976462 -90560797 + (TTTTG)n Simple_repeat Simple_repeat 5 38 0 6 1057 938 148 0 7 chr5 61976462 61976597 -90560662 - B1_Mus1 SINE Alu -13 135 1 6 1057 823 272 0 15 chr5 61976779 61976984 -90560275 + B3 SINE B2 5 206 -10 6 1057 345 286 8 105 chr5 61977170 61977303 -90559956 + B2_Mm2 SINE B2 5 124 -71 6 1057 220 305 0 0 chr5 61977397 61977456 -90559803 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1057 2375 254 41 15 chr5 61977577 61978258 -90559001 + Lx2B LINE L1 6250 7050 -8 6 1057 23 78 0 0 chr5 61978258 61978309 -90558950 + AT_rich Low_complexity Low_complexity 1 51 0 6 1057 432 0 0 0 chr5 61978342 61978390 -90558869 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1057 836 248 65 56 chr5 61978590 61978945 -90558314 + L1_Mur1 LINE L1 702 1059 -5923 6 1057 493 305 11 22 chr5 61978928 61979106 -90558153 + Lx9 LINE L1 6792 6967 -677 6 1057 403 241 200 17 chr5 61979127 61979280 -90557979 + MTD LTR MaLR 196 367 -54 6 1057 214 188 41 55 chr5 61979359 61979432 -90557827 + (TTAAA)n Simple_repeat Simple_repeat 1 72 0 6 1057 27 0 0 0 chr5 61979762 61979789 -90557470 + AT_rich Low_complexity Low_complexity 1 27 0 6 1057 6853 119 30 2 chr5 61979897 61981092 -90556167 - L1_Mus3 LINE L1 -2 6636 5384 6 1057 22732 118 49 6 chr5 61981096 61985765 -90551494 - L1Md_F3 LINE L1 -17 6567 1686 6 1057 37447 41 2 0 chr5 61985762 61987935 -90549324 - L1Md_T LINE L1 0 6585 4414 6 1057 2367 114 103 42 chr5 61987935 61988383 -90548876 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1057 37447 56 3 5 chr5 61988383 61992862 -90544397 - L1Md_T LINE L1 -1473 4413 1 6 1057 3086 111 8 25 chr5 61992854 61993562 -90543697 - L1VL1 LINE L1 -2203 1614 974 6 1057 204 266 20 60 chr5 61994436 61994536 -90542723 + (CATATA)n Simple_repeat Simple_repeat 2 97 0 6 1057 252 200 0 0 chr5 61994619 61994679 -90542580 + T-rich Low_complexity Low_complexity 1 60 0 6 1057 186 43 0 0 chr5 61995752 61995775 -90541484 + (TAA)n Simple_repeat Simple_repeat 1 23 0 6 1057 354 312 9 35 chr5 61996499 61996612 -90540647 + B3 SINE B2 1 110 -106 6 1058 1709 182 6 9 chr5 61997798 61998130 -90539129 + Lx3B LINE L1 6642 6972 -1 6 1058 320 130 86 9 chr5 61998313 61998429 -90538830 + (TA)n Simple_repeat Simple_repeat 2 126 0 6 1058 234 0 0 0 chr5 61999248 61999274 -90537985 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1058 25 0 0 0 chr5 61999622 61999647 -90537612 + AT_rich Low_complexity Low_complexity 1 25 0 6 1058 362 143 0 13 chr5 61999776 61999854 -90537405 + (TA)n Simple_repeat Simple_repeat 2 78 0 6 1058 47 44 0 0 chr5 62000276 62000344 -90536915 + AT_rich Low_complexity Low_complexity 1 68 0 1 1058 282 167 0 0 chr5 62000345 62000393 -90536866 + RMER6C LTR ERVK 643 690 0 2 1058 1078 237 80 53 chr5 62001199 62001821 -90535438 - RMER6C LTR ERVK -12 678 129 3 1058 219 364 96 29 chr5 62001820 62001956 -90535303 - B4 SINE B4 -121 171 27 4 1058 230 172 52 0 chr5 62002277 62002335 -90534924 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1058 3691 198 90 15 chr5 62003964 62004809 -90532450 + RMER13B LTR ERVK 1 908 0 6 1058 24 32 0 0 chr5 62006144 62006175 -90531084 + AT_rich Low_complexity Low_complexity 1 31 0 7 1058 1497 280 18 21 chr5 62007043 62007423 -90529836 + MTC LTR MaLR 36 414 -7 8 1058 285 29 0 0 chr5 62007602 62007636 -90529623 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1058 619 347 126 17 chr5 62008032 62008381 -90528878 - MTD LTR MaLR 0 419 33 1 1058 198 0 0 0 chr5 62008509 62008531 -90528728 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1058 412 212 65 26 chr5 62008590 62008745 -90528514 - Lx2B LINE L1 -6 6994 6834 1 1058 2845 215 37 9 chr5 62008720 62009376 -90527883 - Lx2B LINE L1 -46 6954 6281 1 1058 3413 169 58 5 chr5 62009503 62010129 -90527130 - Lx4A LINE L1 -2 7056 6398 1 1058 1874 172 30 38 chr5 62010129 62010497 -90526762 + Lx4A LINE L1 6040 6404 -654 1 1058 25 31 0 0 chr5 62010755 62010787 -90526472 + AT_rich Low_complexity Low_complexity 1 32 0 1 1058 304 240 181 86 chr5 62010799 62011091 -90526168 - L1M5 LINE L1 -2503 3643 3324 1 1058 26 64 0 0 chr5 62011095 62011142 -90526117 + AT_rich Low_complexity Low_complexity 1 47 0 1 1058 593 287 61 10 chr5 62011677 62011874 -90525385 + RLTR40 LTR ERVK 607 813 -4 1 1058 618 305 10 41 chr5 62012173 62012368 -90524891 + B3 SINE B2 18 206 -10 1 1058 261 57 0 0 chr5 62013773 62013808 -90523451 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1058 9568 53 1 9 chr5 62014064 62016013 -90521246 - L1Md_F2 LINE L1 -13 6569 4638 2 1058 5478 109 3 21 chr5 62016005 62017010 -90520249 + L1Md_F LINE L1 407 1395 -4488 2 1058 804 294 46 32 chr5 62017186 62017290 -90519969 - Lx6 LINE L1 -30 7430 7319 2 1058 186 43 0 0 chr5 62017290 62017313 -90519946 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2 1058 804 294 46 32 chr5 62017313 62017492 -90519767 - Lx6 LINE L1 -142 7318 7144 2 1058 408 286 63 0 chr5 62017493 62017619 -90519640 - Lx6 LINE L1 -1404 6056 5923 2 1058 408 171 24 0 chr5 62017623 62017705 -90519554 + Lx6 LINE L1 5834 5917 -1543 2 1058 7830 75 2 11 chr5 62018375 62019864 -90517395 - L1Md_F2 LINE L1 0 6582 5150 2 1058 198 0 0 0 chr5 62020098 62020120 -90517139 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2 1058 27 0 0 0 chr5 62020411 62020438 -90516821 + AT_rich Low_complexity Low_complexity 1 27 0 2 1058 675 112 64 0 chr5 62020485 62020610 -90516649 - Lx LINE L1 -4 6650 6518 2 1058 2127 199 40 13 chr5 62020847 62021321 -90515938 - Lx5 LINE L1 -915 6135 5649 2 1058 604 276 65 0 chr5 62021322 62021507 -90515752 + Lx5 LINE L1 6844 7040 -10 3 1058 4457 139 50 26 chr5 62022206 62023006 -90514253 - RLTR13D6 LTR ERVK -83 819 1 3 1058 1596 145 8 0 chr5 62023021 62023269 -90513990 - ETnERV3-int LTR ERVK -30 5778 5529 3 1058 2528 86 10 28 chr5 62023283 62023676 -90513583 - RLTR45-int LTR ERVK -1173 6071 5686 3 1058 588 240 96 46 chr5 62023928 62024141 -90513118 + LTRIS4 LTR ERV1 285 587 0 3 1058 2146 133 53 11 chr5 62024143 62024499 -90512760 - ETnERV3-int LTR ERVK -905 4903 4533 3 1058 7974 131 12 37 chr5 62024499 62026093 -90511166 - Lx3C LINE L1 -39 6937 5368 3 1058 629 356 105 20 chr5 62026320 62026710 -90510549 + Lx7 LINE L1 6424 6846 -850 3 1058 47 44 0 0 chr5 62026908 62026976 -90510283 + AT_rich Low_complexity Low_complexity 1 68 0 3 1058 21 71 0 0 chr5 62027280 62027322 -90509937 + AT_rich Low_complexity Low_complexity 1 42 0 3 1058 300 27 0 0 chr5 62027699 62027736 -90509523 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1058 197 133 22 0 chr5 62027779 62027787 -90509472 + (TA)n Simple_repeat Simple_repeat 2 10 0 4 1058 528 68 0 0 chr5 62027787 62027860 -90509399 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1058 197 133 22 0 chr5 62027860 62027896 -90509363 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1058 999 86 12 18 chr5 62029838 62030004 -90507255 + (TTTC)n Simple_repeat Simple_repeat 1 165 0 4 1058 889 340 63 2 chr5 62030017 62030459 -90506800 - Lx8 LINE L1 -376 7097 6629 4 1058 4620 122 13 11 chr5 62030943 62031653 -90505606 + Lx3_Mus LINE L1 6297 7007 -2 4 1058 221 22 0 80 chr5 62032730 62032780 -90504479 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 4 1058 578 323 77 86 chr5 62033087 62033540 -90503719 - RLTR26 LTR ERVK -75 552 14 4 1058 276 336 16 25 chr5 62033561 62033683 -90503576 - Lx8 LINE L1 -838 6635 6515 4 1058 910 257 142 13 chr5 62033858 62034241 -90503018 + Lx9 LINE L1 6905 7464 -180 4 1058 31 26 0 0 chr5 62034293 62034331 -90502928 + AT_rich Low_complexity Low_complexity 1 38 0 4 1058 279 0 0 0 chr5 62034373 62034404 -90502855 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1058 268 219 57 32 chr5 62034424 62034547 -90502712 + Lx9 LINE L1 7519 7644 0 4 1058 594 300 69 9 chr5 62034633 62034980 -90502279 - Lx7 LINE L1 0 5847 5530 5 1058 22 56 0 0 chr5 62035282 62035318 -90501941 + AT_rich Low_complexity Low_complexity 1 36 0 5 1058 376 346 44 17 chr5 62035622 62035966 -90501293 - Lx7 LINE L1 -1188 4955 4603 5 1058 738 325 79 13 chr5 62036363 62036768 -90500491 + RMER1B Other Other 61 822 -520 5 1058 1218 231 33 43 chr5 62036816 62037119 -90500140 + RMER1B Other Other 763 1062 -4 5 1058 581 299 63 8 chr5 62037122 62037505 -90499754 + Lx7 LINE L1 5577 5960 -1513 5 1058 2334 216 15 66 chr5 62038613 62039013 -90498246 + RMER6C LTR ERVK 1 377 -313 5 1058 351 0 0 0 chr5 62039013 62039052 -90498207 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1058 315 0 0 0 chr5 62039052 62039086 -90498173 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1058 2334 216 15 66 chr5 62039086 62039411 -90497848 + RMER6C LTR ERVK 378 689 -1 5 1058 229 274 0 0 chr5 62039576 62039627 -90497632 + ID_B1 SINE B4 144 194 -30 5 1058 2081 106 46 3 chr5 62040802 62041125 -90496134 + L1_Mus3 LINE L1 6296 6632 -6 6 1058 24 53 0 0 chr5 62041332 62041370 -90495889 + AT_rich Low_complexity Low_complexity 1 38 0 6 1058 721 217 34 52 chr5 62041442 62041675 -90495584 - Lx9 LINE L1 -7 7637 7409 6 1058 267 114 0 0 chr5 62042189 62042233 -90495026 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1058 279 348 19 110 chr5 62042233 62042388 -90494871 - B3A SINE B2 -16 182 42 6 1058 405 327 19 52 chr5 62042566 62042776 -90494483 - Lx8 LINE L1 -239 7234 7032 6 1058 426 327 82 18 chr5 62042783 62043125 -90494134 + L1_Mur3 LINE L1 4849 5212 -668 6 1058 200 163 0 23 chr5 62043188 62043232 -90494027 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 6 1058 722 153 11 0 chr5 62043225 62043401 -90493858 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 6 1058 780 151 0 0 chr5 62043387 62043566 -90493693 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 1058 731 167 0 2 chr5 62043572 62043998 -90493261 + (TCTA)n Simple_repeat Simple_repeat 1 424 0 7 1058 1020 172 7 29 chr5 62043998 62044196 -90493063 - B2_Mm2 SINE B2 -13 203 1 7 1058 30 59 0 0 chr5 62044265 62044316 -90492943 + AT_rich Low_complexity Low_complexity 1 51 0 7 1058 216 67 0 0 chr5 62045256 62045286 -90491973 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1058 30 59 0 0 chr5 62045342 62045393 -90491866 + AT_rich Low_complexity Low_complexity 1 51 0 7 1058 624 27 0 0 chr5 62045763 62045837 -90491422 + (TA)n Simple_repeat Simple_repeat 2 75 0 7 1058 388 254 58 36 chr5 62046003 62046142 -90491117 - B1_Mus2 SINE Alu -5 142 1 7 1058 1712 346 46 34 chr5 62047476 62048495 -90488764 - Lx7 LINE L1 -397 7299 6269 7 1058 186 103 0 0 chr5 62049192 62049221 -90488038 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1058 41 48 0 0 chr5 62049579 62049641 -90487618 + AT_rich Low_complexity Low_complexity 1 62 0 7 1058 677 294 45 49 chr5 62049924 62050210 -90487049 - Lx9 LINE L1 -529 7115 6831 8 1058 931 239 60 46 chr5 62050214 62050565 -90486694 + Lx9 LINE L1 7285 7640 -4 8 1058 280 307 75 43 chr5 62050567 62050754 -90486505 - B3A SINE B2 -4 194 2 8 1058 1661 232 34 3 chr5 62051468 62051848 -90485411 + ORR1B1 LTR MaLR 1 392 -2 8 1058 417 70 0 0 chr5 62051987 62052044 -90485215 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1058 432 0 0 0 chr5 62052044 62052091 -90485168 + (GA)n Simple_repeat Simple_repeat 2 49 0 8 1058 1495 208 49 87 chr5 62052680 62053048 -90484211 + ORR1B1 LTR MaLR 41 394 0 8 1058 23 0 0 0 chr5 62053342 62053365 -90483894 + AT_rich Low_complexity Low_complexity 1 23 0 8 1058 315 113 0 0 chr5 62053677 62053730 -90483529 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1058 3137 57 8 0 chr5 62054254 62054642 -90482617 - IAPEY3-int LTR ERVK -2438 5242 4852 8 1058 7939 119 64 19 chr5 62054635 62056856 -90480403 - IAPEY3-int LTR ERVK -4991 2689 22 8 1058 2428 56 6 6 chr5 62056856 62057180 -90480079 - IAPEY2_LTR LTR ERVK 0 357 34 8 1058 27 0 0 0 chr5 62057288 62057315 -90479944 + AT_rich Low_complexity Low_complexity 1 27 0 9 1058 3684 77 0 0 chr5 62057464 62057947 -90479312 - L1Md_F2 LINE L1 -676 5207 4725 9 1058 3093 38 0 5 chr5 62057944 62058319 -90478940 + L1Md_F2 LINE L1 5214 5586 -297 9 1058 7686 63 4 5 chr5 62058319 62059314 -90477945 + L1Md_F2 LINE L1 5587 6580 -2 9 1058 23 0 0 0 chr5 62059379 62059402 -90477857 + AT_rich Low_complexity Low_complexity 1 23 0 9 1058 603 0 0 0 chr5 62059889 62059956 -90477303 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 9 1058 399 132 0 0 chr5 62059970 62060038 -90477221 + (CATA)n Simple_repeat Simple_repeat 4 71 0 9 1058 405 0 0 0 chr5 62061346 62061391 -90475868 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1058 32 67 0 0 chr5 62062114 62062174 -90475085 + AT_rich Low_complexity Low_complexity 1 60 0 9 1058 518 289 25 86 chr5 62062300 62062497 -90474762 - B3 SINE B2 -8 208 24 9 1058 1339 311 71 22 chr5 62062980 62063578 -90473681 - Lx8 LINE L1 -105 7368 6740 9 1058 693 183 166 40 chr5 62063578 62063777 -90473482 - URR1B DNA MER1_type -1 224 1 9 1058 1339 311 71 22 chr5 62063777 62063800 -90473459 - Lx8 LINE L1 -734 6739 6717 9 1058 6838 117 1 11 chr5 62063794 62064840 -90472419 - L1_Mm LINE L1 -404 5479 4444 1 1058 4911 124 20 5 chr5 62064916 62065659 -90471600 - Lx LINE L1 -156 6498 5745 1 1058 279 361 16 52 chr5 62065692 62065885 -90471374 - Lx9 LINE L1 -747 6897 6712 1 1058 28 0 0 0 chr5 62065932 62065960 -90471299 + AT_rich Low_complexity Low_complexity 1 28 0 1 1058 303 377 37 19 chr5 62066000 62066108 -90471151 - B3 SINE B2 -34 182 73 1 1058 2057 117 3 3 chr5 62066310 62066619 -90470640 + L1_Mus1 LINE L1 6258 6566 -1 1 1058 423 0 0 0 chr5 62066630 62066677 -90470582 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1058 298 322 6 45 chr5 62066937 62067093 -90470166 - L1M2 LINE L1 -1173 4970 4821 1 1058 1056 188 5 0 chr5 62067806 62068003 -90469256 - Lx3B LINE L1 -705 6268 6071 1 1058 4690 171 30 22 chr5 62068003 62068191 -90469068 - RMER6-int LTR ERVK -1724 1453 1270 1 1058 1948 210 185 7 chr5 62068191 62068487 -90468772 + RMER6C LTR ERVK 2 386 -304 1 1058 650 13 13 0 chr5 62068487 62068566 -90468693 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1058 1948 210 185 7 chr5 62068566 62068854 -90468405 + RMER6C LTR ERVK 387 690 0 1 1058 4690 171 30 22 chr5 62068854 62069617 -90467642 - RMER6-int LTR ERVK -1908 1269 494 1 1058 359 349 97 68 chr5 62070265 62070616 -90466643 - Lx8 LINE L1 -183 7290 6930 1 1058 748 330 92 33 chr5 62070760 62071852 -90465407 + Lx7 LINE L1 5592 6763 -710 1 1058 1991 139 57 3 chr5 62071969 62072301 -90464958 - Lx LINE L1 -7 6647 6298 1 1058 4956 121 2 0 chr5 62072303 62073172 -90464087 + Lx LINE L1 5421 6289 -365 1 1058 1960 42 4 0 chr5 62073549 62073786 -90463473 + L1Md_F2 LINE L1 5349 5586 -297 1 1058 8011 42 3 2 chr5 62073786 62074767 -90462492 + L1Md_F2 LINE L1 5587 6568 -14 1 1058 2988 103 37 7 chr5 62076527 62076985 -90460274 + Lx3_Mus LINE L1 6530 7001 -8 1 1058 317 277 57 124 chr5 62077009 62077219 -90460040 - B3A SINE B2 0 198 3 1 1058 570 299 9 53 chr5 62077318 62077544 -90459715 + B3 SINE B2 1 216 0 1 1058 1767 116 0 4 chr5 62078434 62078702 -90458557 + L1_Mus4 LINE L1 6370 6636 0 1 1058 333 47 0 0 chr5 62078761 62078804 -90458455 + (TAAAA)n Simple_repeat Simple_repeat 1 43 0 1 1058 21 57 0 0 chr5 62079176 62079211 -90458048 + AT_rich Low_complexity Low_complexity 1 35 0 1 1058 246 193 0 0 chr5 62079279 62079336 -90457923 + CT-rich Low_complexity Low_complexity 4 60 0 1 1058 21 57 0 0 chr5 62079510 62079545 -90457714 + AT_rich Low_complexity Low_complexity 1 35 0 1 1058 837 163 0 0 chr5 62079641 62079776 -90457483 - B2_Mm2 SINE B2 -54 141 7 1 1058 323 195 58 41 chr5 62081935 62082106 -90455153 + (TAGA)n Simple_repeat Simple_repeat 1 174 0 1 1058 237 300 47 64 chr5 62082151 62082322 -90454937 + L1MA6 LINE L1 6095 6262 -38 1 1058 31131 96 14 2 chr5 62082789 62087954 -90449305 + L1Md_F2 LINE L1 356 5581 -302 1 1058 6308 106 41 11 chr5 62087955 62088909 -90448350 + L1Md_F2 LINE L1 5588 6570 -12 1 1058 370 64 0 0 chr5 62088969 62089016 -90448243 + B1_Mus2 SINE Alu 91 137 -10 1 1058 261 0 0 0 chr5 62089016 62089045 -90448214 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1058 198 71 0 0 chr5 62089050 62089078 -90448181 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 1058 24 0 0 0 chr5 62089216 62089240 -90448019 + AT_rich Low_complexity Low_complexity 1 24 0 1 1058 29 0 0 0 chr5 62089552 62089581 -90447678 + AT_rich Low_complexity Low_complexity 1 29 0 1 1058 4880 86 36 1 chr5 62089856 62090544 -90446715 - L1_Mus2 LINE L1 -1 6565 5854 1 1058 4164 70 2 2 chr5 62090589 62091212 -90446047 + L1Md_F2 LINE L1 5333 5955 -627 1 1058 509 333 19 24 chr5 62091455 62091661 -90445598 + RMER15 LTR ERVL 273 477 -98 1 1058 407 165 0 12 chr5 62092416 62092502 -90444757 + (TA)n Simple_repeat Simple_repeat 1 85 0 1 1058 23 0 0 0 chr5 62092655 62092678 -90444581 + AT_rich Low_complexity Low_complexity 1 23 0 1 1058 540 259 32 17 chr5 62093626 62093968 -90443291 - Lx7 LINE L1 -277 6023 5639 1 1058 244 263 125 48 chr5 62094045 62094094 -90443165 - L1M2 LINE L1 -2507 3373 3320 1 1058 354 23 0 0 chr5 62094094 62094137 -90443122 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1058 282 260 107 37 chr5 62094137 62094467 -90442792 - L1M2 LINE L1 -2561 3319 2993 1 1058 254 243 209 33 chr5 62094470 62094623 -90442636 + Lx6 LINE L1 7245 7424 -36 1 1058 21 0 0 0 chr5 62094623 62094644 -90442615 + AT_rich Low_complexity Low_complexity 1 21 0 1 1058 4276 19 0 0 chr5 62095781 62096263 -90440996 - LTRIS_Mm LTR ERV1 0 482 1 1 1058 420 20 0 0 chr5 62097021 62097070 -90440189 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1058 426 148 0 0 chr5 62097103 62097204 -90440055 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 1058 1537 249 14 0 chr5 62097346 62097695 -90439564 - RLTR18B LTR ERVK -4 508 155 1 1058 180 0 0 0 chr5 62097957 62097977 -90439282 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1058 4855 176 31 8 chr5 62098111 62099003 -90438256 + Lx2B LINE L1 6084 6996 -4 1 1058 551 262 51 36 chr5 62099796 62099933 -90437326 - Lx9 LINE L1 -9 7635 7491 1 1058 229 51 0 49 chr5 62099933 62099974 -90437285 + (TATG)n Simple_repeat Simple_repeat 4 42 0 1 1058 551 262 51 36 chr5 62099974 62100054 -90437205 - Lx9 LINE L1 -154 7490 7419 1 1058 207 69 0 0 chr5 62100054 62100083 -90437176 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1058 551 262 51 36 chr5 62100083 62100196 -90437063 - Lx9 LINE L1 -226 7418 7299 1 1058 292 363 29 23 chr5 62100260 62100435 -90436824 - MLT2D LTR ERVL -216 198 23 1 1058 1317 80 26 5 chr5 62100617 62100806 -90436453 + B2_Mm1a SINE B2 1 193 0 1 1058 1283 205 76 49 chr5 62101606 62102121 -90435138 - RMER6C LTR ERVK 0 690 2 1 1058 213 65 0 0 chr5 62104027 62104058 -90433201 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 1 1058 291 393 16 0 chr5 62104084 62104206 -90433053 + RSINE1 SINE B4 15 138 -27 1 1058 354 332 82 15 chr5 62105192 62105388 -90431871 - Lx8 LINE L1 -265 7208 7000 1 1058 27 0 0 0 chr5 62105393 62105420 -90431839 + AT_rich Low_complexity Low_complexity 1 27 0 1 1058 3120 188 72 96 chr5 62106584 62107273 -90429986 + RLTR42-int LTR ERVK 1154 1816 -3706 1 1058 1001 116 0 0 chr5 62107273 62107411 -90429848 + B1_Mus2 SINE Alu 1 138 -9 1 1058 258 56 0 0 chr5 62107411 62107447 -90429812 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1058 3120 188 72 96 chr5 62107447 62107686 -90429573 + RLTR42-int LTR ERVK 1817 2060 -3462 1 1058 356 0 23 0 chr5 62108425 62108469 -90428790 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1058 5182 189 61 17 chr5 62108730 62109906 -90427353 + RLTR42-int LTR ERVK 2707 3934 -1588 1 1058 3576 229 83 43 chr5 62109975 62111033 -90426226 + RLTR42-int LTR ERVK 4374 5473 -49 1 1058 861 272 30 35 chr5 62111055 62111287 -90425972 + RLTR42 LTR ERVK 9 239 0 1 1058 225 0 0 0 chr5 62111488 62111513 -90425746 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 1058 4094 83 2 12 chr5 62111516 62112087 -90425172 - L1Md_F2 LINE L1 -13 6569 6005 1 1058 5282 60 44 3 chr5 62112089 62112787 -90424472 - L1Md_T LINE L1 0 6582 5856 1 1058 5771 84 35 1 chr5 62112921 62113719 -90423540 - L1Md_F2 LINE L1 -12 6570 5746 1 1058 9400 84 1 54 chr5 62113719 62115122 -90422137 + L1Md_F2 LINE L1 4463 5790 -93 1 1058 22 0 0 0 chr5 62115797 62115819 -90421440 + AT_rich Low_complexity Low_complexity 1 22 0 1 1058 605 239 88 72 chr5 62115819 62116125 -90421134 - Lx2 LINE L1 -1 7643 7333 1 1058 21 57 0 0 chr5 62116125 62116160 -90421099 + AT_rich Low_complexity Low_complexity 1 35 0 1 1058 667 339 40 14 chr5 62116400 62116696 -90420563 + RMER15 LTR ERVL 272 575 0 1 1058 1286 130 33 0 chr5 62116735 62116950 -90420309 - Lx2 LINE L1 -1 6996 6775 1 1058 912 137 107 0 chr5 62116950 62117118 -90420141 - Lx2 LINE L1 -354 6643 6458 1 1058 500 228 40 8 chr5 62117205 62117329 -90419930 - Lx2 LINE L1 -385 7259 7132 1 1058 21 36 0 0 chr5 62118162 62118190 -90419069 + AT_rich Low_complexity Low_complexity 1 28 0 1 1058 189 0 0 0 chr5 62118590 62118611 -90418648 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1 1058 319 259 56 50 chr5 62118836 62119015 -90418244 - L1M4 LINE L1 -707 5477 5298 1 1058 1014 143 95 1 chr5 62119025 62119248 -90418011 - Lx2 LINE L1 -2 6995 6788 1 1058 1623 187 23 23 chr5 62119242 62119593 -90417666 - Lx2 LINE L1 -831 6166 5816 1 1058 8219 189 51 25 chr5 62119593 62121377 -90415882 - ORR1A3-int LTR MaLR -132 1831 1 1 1058 1510 196 28 46 chr5 62121382 62121709 -90415550 - ORR1A3 LTR MaLR -5 321 1 1 1058 390 266 42 36 chr5 62121770 62122146 -90415113 - L1_Mur3 LINE L1 -2207 3673 3444 1 1058 219 69 0 0 chr5 62122157 62122186 -90415073 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1058 1205 306 108 10 chr5 62122208 62122798 -90414461 - L1_Mur3 LINE L1 -6559 1169 522 1 1058 293 377 91 16 chr5 62123198 62123384 -90413875 + MTE-int LTR MaLR 85 284 -1296 1 1058 1714 191 59 0 chr5 62123414 62123738 -90413521 - Lx2B LINE L1 -5 6995 6653 1 1058 643 391 72 72 chr5 62123794 62124767 -90412492 + MTE-int LTR MaLR 328 1300 -280 1 1058 278 152 17 0 chr5 62124767 62124826 -90412433 + CT-rich Low_complexity Low_complexity 3 62 0 1 1058 211 104 20 40 chr5 62125025 62125075 -90412184 + (TAA)n Simple_repeat Simple_repeat 1 49 0 1 1058 204 40 0 0 chr5 62125402 62125427 -90411832 + (ATG)n Simple_repeat Simple_repeat 2 26 0 1 1058 655 333 67 46 chr5 62125474 62125779 -90411480 - ORR1E LTR MaLR -2 357 51 1 1058 207 0 0 0 chr5 62125779 62125802 -90411457 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1058 655 333 67 46 chr5 62125802 62125842 -90411417 - ORR1E LTR MaLR -309 50 5 1 1058 1579 313 35 46 chr5 62125825 62126569 -90410690 - ORR1E-int LTR MaLR -32 1548 742 1 1058 629 205 23 8 chr5 62126490 62126618 -90410641 - RLTR22_Mur LTR ERVK -147 1701 1572 1 1058 4361 134 16 24 chr5 62126618 62127531 -90409728 + L1VL2 LINE L1 594 1476 -4407 1 132 6793 172 32 15 chr5 62127541 62128270 -90408989 + Lx2 LINE L1 3124 3848 -2029 1 1059 279 0 0 0 chr5 62128270 62128301 -90408958 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1059 6793 172 32 15 chr5 62128301 62128942 -90408317 + Lx2 LINE L1 3849 4516 -1361 1 1059 8290 150 20 11 chr5 62128941 62130532 -90406727 + Lx2 LINE L1 5394 6996 -1 1 1059 21 0 0 0 chr5 62131241 62131262 -90405997 + AT_rich Low_complexity Low_complexity 1 21 0 1 1059 300 53 0 0 chr5 62131616 62131654 -90405605 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1059 741 301 30 51 chr5 62132052 62132385 -90404874 + Lx9 LINE L1 7187 7512 -132 1 1059 2396 189 76 21 chr5 62132789 62133302 -90403957 + RLTR20A LTR ERVK 1 541 0 1 1059 806 214 137 33 chr5 62133302 62133596 -90403663 - Lx5 LINE L1 -671 6387 6066 1 1059 1338 212 70 3 chr5 62133595 62133893 -90403366 + Lx4B LINE L1 6393 6710 -348 1 1059 4110 184 18 7 chr5 62133893 62134633 -90402626 + Lx4A LINE L1 6302 7049 -9 1 1059 928 341 134 25 chr5 62134651 62135298 -90401961 - Lx8 LINE L1 -400 7073 6356 1 1059 36 23 0 0 chr5 62135630 62135673 -90401586 + AT_rich Low_complexity Low_complexity 1 43 0 1 1059 21 36 0 0 chr5 62135858 62135886 -90401373 + AT_rich Low_complexity Low_complexity 1 28 0 1 1059 591 15 0 0 chr5 62136565 62136633 -90400626 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 1 1059 1953 90 0 0 chr5 62137022 62137290 -90399969 + L1_Mm LINE L1 3992 4259 -1624 2 1059 4569 187 35 32 chr5 62137294 62138371 -90398888 - L1_Mur2 LINE L1 -1561 4316 3237 2 1059 2662 188 45 45 chr5 62138396 62139038 -90398221 + L1_Mur2 LINE L1 5150 5791 -86 2 1059 339 152 0 0 chr5 62139034 62139093 -90398166 - Lx2 LINE L1 -358 6639 6581 2 1059 1217 154 14 0 chr5 62139110 62139330 -90397929 + Lx2 LINE L1 6775 6997 0 2 1059 4441 225 28 24 chr5 62139595 62140721 -90396538 + Lx2B LINE L1 5783 7005 -53 2 1059 216 97 0 0 chr5 62140730 62140761 -90396498 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1059 189 196 0 0 chr5 62140918 62140964 -90396295 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1059 581 82 10 0 chr5 62140968 62141065 -90396194 + (GA)n Simple_repeat Simple_repeat 2 99 0 2 1059 212 77 26 0 chr5 62141134 62141173 -90396086 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1059 453 314 20 20 chr5 62141634 62141832 -90395427 + RLTR42-int LTR ERVK 1203 1400 -4122 2 1059 1090 58 0 14 chr5 62142338 62142478 -90394781 + B1_Mus1 SINE Alu 2 139 -9 2 1059 436 252 0 0 chr5 62143481 62143580 -90393679 + Lx9 LINE L1 6634 6732 -912 2 1059 719 201 0 6 chr5 62143695 62143875 -90393384 + GA-rich Low_complexity Low_complexity 2 180 0 2 1059 238 273 0 0 chr5 62144137 62144192 -90393067 - ORR1C2 LTR MaLR 0 384 330 2 1059 333 0 0 0 chr5 62144192 62144229 -90393030 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1059 477 0 0 0 chr5 62144229 62144281 -90392978 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1059 1150 233 55 20 chr5 62144299 62144553 -90392706 - RMER20B LTR ERVK -31 596 334 2 1059 2012 129 6 3 chr5 62144553 62144872 -90392387 - L1_Mus2 LINE L1 -642 5241 4922 2 1059 5781 95 20 39 chr5 62144872 62146142 -90391117 + L1_Mus2 LINE L1 5235 6566 0 2 1059 1406 221 14 0 chr5 62146152 62146428 -90390831 - RMER20B LTR ERVK -284 343 64 2 1059 288 234 8 30 chr5 62146434 62146566 -90390693 + (TATATG)n Simple_repeat Simple_repeat 3 131 0 2 1059 956 223 108 9 chr5 62146586 62146808 -90390451 - ORR1C2 LTR MaLR -66 318 75 2 1059 281 235 29 14 chr5 62146864 62146933 -90390326 - ORR1C2 LTR MaLR -314 70 1 2 1059 441 0 0 0 chr5 62146960 62147009 -90390250 + (GAAAA)n Simple_repeat Simple_repeat 3 51 0 2 1059 1347 72 0 0 chr5 62147009 62147188 -90390071 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 2 1059 246 81 0 0 chr5 62147188 62147225 -90390034 + (GGAAA)n Simple_repeat Simple_repeat 5 41 0 2 1059 5367 40 6 0 chr5 62147741 62148395 -90388864 + L1Md_F3 LINE L1 5927 6584 0 2 1059 30 0 0 0 chr5 62148495 62148525 -90388734 + AT_rich Low_complexity Low_complexity 1 30 0 2 1059 213 178 0 0 chr5 62150496 62150541 -90386718 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1059 305 250 851 0 chr5 62150618 62150737 -90386522 - B4 SINE B4 -61 231 11 2 1059 2054 124 72 6 chr5 62151530 62151878 -90385381 - Lx3_Mus LINE L1 -5 7004 6634 2 1059 15053 166 113 53 chr5 62151890 62152795 -90384464 + L1_Mur1 LINE L1 17 1271 -4615 2 1059 315 0 0 0 chr5 62152795 62152830 -90384429 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1059 15053 107 11 2 chr5 62152830 62155120 -90382139 + L1_Mur1 LINE L1 1272 3577 -2309 2 1059 276 315 0 0 chr5 62155147 62155236 -90382023 + Lx9 LINE L1 7329 7417 -227 2 1059 22 70 0 0 chr5 62156173 62156216 -90381043 + AT_rich Low_complexity Low_complexity 1 43 0 2 1059 24 32 0 0 chr5 62156635 62156666 -90380593 + AT_rich Low_complexity Low_complexity 1 31 0 2 1059 384 340 33 33 chr5 62156838 62157078 -90380181 - Lx8 LINE L1 -206 7267 7028 2 1059 1805 226 51 2 chr5 62157086 62157146 -90380113 + MTC LTR MaLR 1 61 -360 2 1059 378 0 0 0 chr5 62157146 62157188 -90380071 + (CAA)n Simple_repeat Simple_repeat 1 42 0 2 1059 1805 226 51 2 chr5 62157188 62157521 -90379738 + MTC LTR MaLR 62 412 -9 2 1059 542 345 35 4 chr5 62157683 62157939 -90379320 - Lx9 LINE L1 -618 7026 6763 2 1059 1794 81 60 42 chr5 62157993 62158277 -90378982 + L1Md_F2 LINE L1 6280 6568 -14 2 1059 492 252 46 24 chr5 62158279 62158566 -90378693 - Lx9 LINE L1 -9 7635 7313 2 1059 189 0 0 0 chr5 62158571 62158592 -90378667 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 2 1059 631 339 92 12 chr5 62158609 62158955 -90378304 - Lx8 LINE L1 -874 6599 6226 2 1059 35 54 0 0 chr5 62158966 62159022 -90378237 + AT_rich Low_complexity Low_complexity 1 56 0 2 1059 21 36 0 0 chr5 62160740 62160768 -90376491 + AT_rich Low_complexity Low_complexity 1 28 0 2 1059 3842 174 7 21 chr5 62161240 62162126 -90375133 + L1VL4 LINE L1 188 1058 -2501 2 1059 5445 188 136 73 chr5 62162112 62162899 -90374360 + Lx2 LINE L1 3741 4658 -2339 2 1059 514 218 74 45 chr5 62162899 62162930 -90374329 + ID_B1 SINE B4 55 179 -45 2 1059 406 248 0 87 chr5 62162930 62163045 -90374214 + MT2B LTR ERVL 150 254 -347 2 1059 824 124 8 0 chr5 62162950 62163071 -90374188 + B1_Mus1 SINE Alu 6 127 -21 2 1059 5445 188 136 73 chr5 62163080 62164348 -90372911 + Lx2 LINE L1 4659 6139 -858 2 1059 1386 210 10 50 chr5 62165020 62165416 -90371843 + L1_Mur3 LINE L1 1490 1869 -4011 2 1059 239 269 0 8 chr5 62165417 62165537 -90371722 + CT-rich Low_complexity Low_complexity 1 119 0 2 1059 542 208 8 15 chr5 62165546 62165678 -90371581 - Lx7 LINE L1 0 7696 7566 2 1059 1057 292 20 7 chr5 62165720 62166020 -90371239 - Lx7 LINE L1 -461 7235 6932 2 1059 288 0 0 0 chr5 62166404 62166436 -90370823 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1059 24 85 0 0 chr5 62166520 62166579 -90370680 + AT_rich Low_complexity Low_complexity 1 59 0 2 1059 655 197 14 7 chr5 62166589 62166737 -90370522 - Lx3B LINE L1 -2 6971 6823 2 1059 3497 46 2 1 chr5 62166784 62167226 -90370033 + L1Md_A LINE L1 5584 5996 -586 2 1059 5345 34 0 0 chr5 62167226 62167851 -90369408 - RLTR10-int LTR ERVK -373 1614 990 2 1059 359 271 31 8 chr5 62167933 62168063 -90369196 - RLTR10-int LTR ERVK -5987 1594 1462 2 1059 5645 50 1 3 chr5 62168127 62168825 -90368434 - RLTR10-int LTR ERVK -989 998 302 2 1059 2301 78 119 11 chr5 62168825 62169177 -90368082 - RLTR10 LTR ERVK 0 390 1 2 1059 1627 194 46 3 chr5 62169180 62169547 -90367712 - L1_Mur2 LINE L1 -1416 4461 4079 2 1059 35406 35 0 1 chr5 62169549 62175400 -90361859 + L1Md_T LINE L1 1 5589 -297 2 1059 9005 4 0 0 chr5 62175400 62176396 -90360863 + L1Md_T LINE L1 5590 6585 0 2 1059 846 226 32 29 chr5 62176932 62177166 -90360093 + MTC LTR MaLR 168 400 -21 2 1059 225 346 88 10 chr5 62177231 62177333 -90359926 - MTEb LTR MaLR -17 362 253 2 1059 3305 169 116 19 chr5 62177461 62178136 -90359123 + Lx4A LINE L1 6318 7057 -1 2 1059 182 176 20 0 chr5 62178278 62178329 -90358930 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1059 317 337 119 38 chr5 62178603 62178788 -90358471 - MLT2B2 LTR ERVL -315 200 1 2 1059 474 65 0 0 chr5 62180590 62180652 -90356607 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1059 915 216 11 0 chr5 62180815 62181000 -90356259 - Lx4B LINE L1 -550 6508 6322 2 1059 1686 166 30 3 chr5 62181097 62181393 -90355866 + Lx4B LINE L1 6558 6861 -197 2 1059 1417 242 129 28 chr5 62181393 62181767 -90355492 + RLTR20B1 LTR ERVK 53 460 -103 2 1059 333 0 0 0 chr5 62181767 62181804 -90355455 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1059 1417 242 129 28 chr5 62181804 62181893 -90355366 + RLTR20B1 LTR ERVK 461 562 -1 2 1059 21 0 0 0 chr5 62182825 62182846 -90354413 + AT_rich Low_complexity Low_complexity 1 21 0 2 1059 240 59 0 0 chr5 62183735 62183769 -90353490 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1059 225 0 0 0 chr5 62183852 62183877 -90353382 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1059 333 110 13 27 chr5 62183879 62183954 -90353305 + (TA)n Simple_repeat Simple_repeat 1 74 0 2 1059 708 385 58 45 chr5 62184036 62185138 -90352121 + Lx9 LINE L1 6314 7429 -215 2 1059 7072 38 4 0 chr5 62186989 62187912 -90349347 - L1Md_F2 LINE L1 -646 5936 5012 2 1059 5010 66 0 0 chr5 62187912 62188546 -90348713 + L1Md_F2 LINE L1 5937 6570 -12 2 1059 333 68 0 0 chr5 62189091 62189135 -90348124 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1059 561 159 45 0 chr5 62189494 62189626 -90347633 - Lx9 LINE L1 -1 7643 7506 2 1059 5551 68 0 6 chr5 62189626 62190340 -90346919 + L1Md_F2 LINE L1 5740 6449 -133 2 1059 550 165 11 0 chr5 62191056 62191147 -90346112 + Lx4B LINE L1 6378 6469 -589 2 1059 1206 275 114 29 chr5 62191144 62191593 -90345666 + Lx4B LINE L1 6571 7057 -1 2 1059 29 28 0 0 chr5 62191858 62191894 -90345365 + AT_rich Low_complexity Low_complexity 1 36 0 2 1059 365 256 22 0 chr5 62193119 62193209 -90344050 + Lx9 LINE L1 6718 6809 -835 2 1059 26 50 0 0 chr5 62193225 62193265 -90343994 + AT_rich Low_complexity Low_complexity 1 40 0 2 1059 21 36 0 0 chr5 62193279 62193307 -90343952 + AT_rich Low_complexity Low_complexity 1 28 0 2 1059 530 222 179 35 chr5 62193371 62193474 -90343785 + Lx9 LINE L1 7372 7478 -166 2 1059 207 114 0 0 chr5 62193474 62193509 -90343750 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1059 530 222 179 35 chr5 62193509 62193634 -90343625 + Lx9 LINE L1 7479 7632 -12 2 1059 1234 0 0 0 chr5 62193630 62193765 -90343494 + L1_Mm LINE L1 5452 5586 -297 2 1059 8890 9 0 0 chr5 62193765 62194761 -90342498 + L1Md_A LINE L1 5587 6582 0 2 1059 4724 124 32 1 chr5 62194921 62195670 -90341589 + Lx3B LINE L1 6063 6834 -139 2 1059 273 119 0 0 chr5 62195705 62195747 -90341512 + (TAA)n Simple_repeat Simple_repeat 3 44 0 2 1059 808 151 6 30 chr5 62195749 62195913 -90341346 + Lx LINE L1 6485 6644 -10 2 1059 306 0 0 0 chr5 62195922 62195956 -90341303 + (TAA)n Simple_repeat Simple_repeat 3 36 0 2 1059 546 291 40 20 chr5 62196267 62196467 -90340792 - MLT2D LTR ERVL -189 225 22 2 1059 28 86 0 0 chr5 62197088 62197158 -90340101 + AT_rich Low_complexity Low_complexity 1 70 0 2 1059 203 114 23 0 chr5 62197486 62197530 -90339729 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1059 230 336 154 8 chr5 62198161 62198284 -90338975 - B4A SINE B4 -84 208 68 2 1059 1977 288 174 37 chr5 62198341 62198501 -90338758 - Lx9 LINE L1 -640 7004 6832 2 1059 1328 236 77 58 chr5 62198501 62198932 -90338327 + RMER10A LTR ERVL 4 442 0 2 1059 1977 288 174 37 chr5 62198932 62200018 -90337241 - Lx9 LINE L1 -813 6831 5587 2 1059 1860 217 11 8 chr5 62202398 62202775 -90334484 - Lx6 LINE L1 -19 7441 7064 2 1059 4691 42 7 15 chr5 62202810 62203040 -90334219 - L1Md_F3 LINE L1 -14 6570 6348 2 1059 2936 59 0 0 chr5 62203040 62203397 -90333862 - IAPEY2_LTR LTR ERVK 0 357 1 2 1059 4691 42 7 15 chr5 62203397 62203762 -90333497 - L1Md_F3 LINE L1 -237 6347 5980 2 1059 233 230 34 11 chr5 62204460 62204479 -90332780 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1059 333 0 0 0 chr5 62204479 62204516 -90332743 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 2 1059 233 230 34 11 chr5 62204516 62204584 -90332675 + (TA)n Simple_repeat Simple_repeat 2 71 0 3 1059 195 222 0 0 chr5 62204589 62204634 -90332625 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1059 1041 106 0 0 chr5 62205110 62205252 -90332007 + B1_Mus1 SINE Alu 2 143 -5 3 1059 659 215 6 0 chr5 62206834 62207006 -90330253 + (TA)n Simple_repeat Simple_repeat 2 174 0 3 1059 218 371 105 19 chr5 62207051 62207213 -90330046 - ID_B1 SINE B4 -22 202 27 3 1059 27 0 0 0 chr5 62207344 62207371 -90329888 + AT_rich Low_complexity Low_complexity 1 27 0 3 1059 22 0 0 0 chr5 62207792 62207814 -90329445 + AT_rich Low_complexity Low_complexity 1 22 0 3 1059 23 68 0 0 chr5 62208091 62208135 -90329124 + AT_rich Low_complexity Low_complexity 1 44 0 3 1059 396 380 36 13 chr5 62208498 62208805 -90328454 + Lx9 LINE L1 6332 6645 -999 3 1059 375 23 0 0 chr5 62208839 62208883 -90328376 + (TAAAA)n Simple_repeat Simple_repeat 1 44 0 3 1059 1436 200 0 0 chr5 62210023 62210268 -90326991 + Lx2 LINE L1 6285 6529 -468 3 1059 485 127 36 81 chr5 62210268 62210379 -90326880 + Lx2 LINE L1 6890 6995 -2 3 1059 378 0 0 0 chr5 62210527 62210569 -90326690 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1059 21 0 0 0 chr5 62212319 62212340 -90324919 + AT_rich Low_complexity Low_complexity 1 21 0 3 1059 998 46 28 28 chr5 62212630 62212809 -90324450 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1059 22 0 0 0 chr5 62213141 62213163 -90324096 + AT_rich Low_complexity Low_complexity 1 22 0 3 1059 18278 158 16 41 chr5 62213218 62217968 -90319291 - L1_Mus4 LINE L1 -6 6630 2010 3 1059 189 74 0 0 chr5 62218166 62218193 -90319066 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1059 239 319 45 55 chr5 62218307 62218778 -90318481 + L1MC LINE L1 4499 4964 -1182 3 1059 5166 167 20 11 chr5 62219732 62220727 -90316532 - L1_Mur1 LINE L1 -3504 2382 1379 3 1059 398 20 0 19 chr5 62220737 62220789 -90316470 + (TAA)n Simple_repeat Simple_repeat 1 51 0 3 1059 968 245 15 19 chr5 62220923 62221185 -90316074 - Lx6 LINE L1 -946 4934 4674 3 1059 5634 251 83 12 chr5 62221178 62223223 -90314036 + Lx6 LINE L1 4924 7116 -344 3 1059 774 22 0 0 chr5 62223223 62223315 -90313944 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 1059 597 28 0 0 chr5 62223315 62223385 -90313874 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 1059 5634 272 90 12 chr5 62223385 62223710 -90313549 + Lx6 LINE L1 7117 7447 -13 3 1059 183 80 0 0 chr5 62224432 62224457 -90312802 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 3 1059 196 175 68 34 chr5 62224963 62225022 -90312237 + L4 LINE RTE 1406 1466 -563 3 1059 191 173 17 103 chr5 62225553 62225611 -90311648 + L3 LINE CR1 2533 2585 -1904 3 1059 22 70 0 0 chr5 62225792 62225835 -90311424 + AT_rich Low_complexity Low_complexity 1 43 0 3 1059 290 210 16 0 chr5 62225885 62225947 -90311312 + RMER1C Other Other 1270 1332 -10 3 1059 2233 140 31 8 chr5 62226781 62227169 -90310090 + Lx LINE L1 6252 6648 -6 3 1059 1367 244 52 22 chr5 62227266 62227673 -90309586 + MTC LTR MaLR 1 419 -2 3 1059 496 227 37 29 chr5 62227683 62227819 -90309440 + MTC-int LTR MaLR 13 149 -1109 3 1059 1147 257 71 0 chr5 62227868 62228179 -90309080 + ORR1C2 LTR MaLR 1 333 -51 3 1059 1603 122 47 12 chr5 62228179 62228435 -90308824 + L1_Mus3 LINE L1 6303 6567 -71 3 1059 445 88 0 126 chr5 62228435 62228578 -90308681 + T-rich Low_complexity Low_complexity 2 126 0 3 1059 510 96 0 0 chr5 62228581 62228654 -90308605 + (T)n Simple_repeat Simple_repeat 1 73 0 3 1059 455 62 0 0 chr5 62228654 62228753 -90308506 + L1_Mus4 LINE L1 6562 6636 0 3 1059 233 159 23 0 chr5 62228753 62228797 -90308462 + ORR1C2 LTR MaLR 332 376 -8 3 1059 222 37 0 0 chr5 62230699 62230726 -90306533 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 3 1059 13551 199 42 30 chr5 62230735 62233059 -90304200 - Lx4B LINE L1 -32 7026 4635 3 1059 408 40 0 0 chr5 62233059 62233109 -90304150 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 3 1059 13551 182 36 37 chr5 62233109 62234223 -90303036 - Lx4B LINE L1 -1243 4634 3474 3 1059 207 100 0 0 chr5 62234223 62234253 -90303006 + (TTG)n Simple_repeat Simple_repeat 1 30 0 3 1059 13551 182 36 37 chr5 62234253 62235018 -90302241 - Lx4B LINE L1 -2404 3473 2802 3 1059 831 233 146 38 chr5 62235017 62235387 -90301872 - Lx4B LINE L1 -5777 1207 798 3 1059 22 0 0 0 chr5 62235627 62235649 -90301610 + AT_rich Low_complexity Low_complexity 1 22 0 3 1059 2400 173 18 9 chr5 62235649 62236087 -90301172 - Lx4A LINE L1 0 7058 6617 3 1059 2581 180 20 2 chr5 62236087 62236537 -90300722 - Lx4A LINE L1 -536 6522 6065 3 1059 343 281 0 22 chr5 62236556 62236647 -90300612 - Lx8 LINE L1 -348 7125 7037 3 1059 21 57 0 0 chr5 62236954 62236989 -90300270 + AT_rich Low_complexity Low_complexity 1 35 0 3 1059 21 0 0 0 chr5 62238469 62238490 -90298769 + AT_rich Low_complexity Low_complexity 1 21 0 3 1059 2285 225 70 29 chr5 62238875 62239462 -90297797 + RMER19C LTR ERVK 1 611 0 3 1059 198 0 0 0 chr5 62239511 62239533 -90297726 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1059 288 98 0 0 chr5 62239836 62239877 -90297382 - Lx3A LINE L1 -339 6642 6602 3 1059 230 406 51 0 chr5 62240253 62240391 -90296868 + MTD LTR MaLR 21 165 -254 3 1059 23 33 0 0 chr5 62240506 62240536 -90296723 + AT_rich Low_complexity Low_complexity 1 30 0 3 1059 24 0 0 0 chr5 62240558 62240582 -90296677 + AT_rich Low_complexity Low_complexity 1 24 0 3 1059 885 269 61 90 chr5 62240740 62241116 -90296143 - ORR1D1 LTR MaLR -6 368 4 3 1059 200 196 65 0 chr5 62241499 62241545 -90295714 + CT-rich Low_complexity Low_complexity 4 52 0 3 1059 5470 68 0 3 chr5 62241994 62242712 -90294547 + L1Md_F2 LINE L1 5856 6571 -11 3 1059 1272 176 4 20 chr5 62242712 62242961 -90294298 - Lx2 LINE L1 -21 6976 6732 3 1059 7430 48 2 4 chr5 62242966 62243884 -90293375 - L1Md_F2 LINE L1 -1 6581 5666 3 1059 400 55 0 0 chr5 62243882 62243939 -90293320 + L1_Mm LINE L1 3919 3975 -1905 3 1059 692 302 228 14 chr5 62243978 62244394 -90292865 + MTE-int LTR MaLR 83 587 -993 3 1059 239 359 129 13 chr5 62244717 62244872 -90292387 - MER5B DNA MER1_type 0 178 6 3 1059 3291 148 29 7 chr5 62246025 62246578 -90290681 - Lx LINE L1 -8 6646 6082 3 1059 283 324 0 9 chr5 62246881 62246993 -90290266 - L1MA9 LINE L1 -291 6021 5911 3 1059 2709 57 52 0 chr5 62247047 62247416 -90289843 + RLTR10 LTR ERVK 1 388 -2 3 1059 6976 54 54 1 chr5 62247428 62248332 -90288927 + RLTR10-int LTR ERVK 41 992 -995 3 1059 500 311 43 43 chr5 62248357 62248780 -90288479 + RLTR10-int LTR ERVK 1172 1594 -5987 3 1059 5352 86 22 15 chr5 62248861 62249221 -90288038 + RLTR10-int LTR ERVK 990 1364 -623 3 1059 450 0 0 0 chr5 62249221 62249271 -90287988 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1059 5352 98 26 18 chr5 62249271 62249683 -90287576 + RLTR10-int LTR ERVK 1365 1733 -254 3 1059 1076 177 93 34 chr5 62249683 62249974 -90287285 + IAPEY3_LTR LTR ERVK 14 385 -5 3 1059 315 0 0 0 chr5 62250048 62250083 -90287176 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1059 1578 155 3 59 chr5 62250349 62250637 -90286622 - MT2C_Mm LTR ERVL -103 372 101 3 1059 2998 66 13 0 chr5 62250696 62251092 -90286167 + L1Md_F2 LINE L1 6181 6581 -1 3 1059 3366 106 38 0 chr5 62251477 62252012 -90285247 - Lx LINE L1 -556 6098 5545 3 1059 375 23 0 0 chr5 62253567 62253611 -90283648 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1059 255 362 88 63 chr5 62253751 62254069 -90283190 - MLT1A LTR MaLR -19 355 30 3 1059 252 0 0 0 chr5 62255243 62255271 -90281988 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1059 387 41 0 0 chr5 62255272 62255321 -90281938 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1059 254 386 53 8 chr5 62256887 62257020 -90280239 + B1F SINE Alu 1 139 -10 3 1059 23 33 0 0 chr5 62257042 62257072 -90280187 + AT_rich Low_complexity Low_complexity 1 30 0 3 1059 508 251 19 20 chr5 62257821 62258008 -90279251 + Lx8 LINE L1 5706 5925 -1548 3 1059 1877 180 91 0 chr5 62258093 62258443 -90278816 + ORR1C2 LTR MaLR 1 382 -2 3 1059 241 200 0 36 chr5 62258596 62258679 -90278580 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 3 1060 1098 214 26 26 chr5 62259328 62259558 -90277701 + Lx5 LINE L1 6627 6856 -194 3 1060 518 319 23 29 chr5 62259639 62259813 -90277446 + MT2A LTR ERVL 290 462 -71 3 1060 252 172 0 0 chr5 62259815 62259873 -90277386 + CT-rich Low_complexity Low_complexity 1 58 0 3 1060 462 36 0 0 chr5 62259873 62259929 -90277330 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1060 339 127 0 0 chr5 62260074 62260137 -90277122 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 3 1060 27 49 0 0 chr5 62260699 62260740 -90276519 + AT_rich Low_complexity Low_complexity 1 41 0 3 1060 21 36 0 0 chr5 62261132 62261160 -90276099 + AT_rich Low_complexity Low_complexity 1 28 0 3 1060 467 85 12 0 chr5 62261803 62261885 -90275374 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 1060 2448 178 20 9 chr5 62262244 62262741 -90274518 + Lx3C LINE L1 6428 6918 -55 3 1060 456 183 37 22 chr5 62262712 62262846 -90274413 + Lx3C LINE L1 6839 6974 -2 3 1060 415 326 54 7 chr5 62262873 62263021 -90274238 - B3A SINE B2 -34 164 10 3 1060 386 370 20 91 chr5 62263625 62263824 -90273435 + B3A SINE B2 5 189 -9 3 1060 226 328 61 9 chr5 62265194 62265308 -90271951 - Lx7 LINE L1 -18 7678 7559 3 1060 189 0 0 0 chr5 62265327 62265348 -90271911 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 3 1060 273 57 0 0 chr5 62265394 62265429 -90271830 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 3 1060 306 0 0 0 chr5 62265901 62265935 -90271324 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1060 272 402 8 16 chr5 62265938 62266062 -90271197 - RSINE1 SINE B4 -13 152 30 3 1060 953 83 0 0 chr5 62266062 62266195 -90271064 + L1_Mus1 LINE L1 6435 6567 0 3 1060 7225 133 75 40 chr5 62266848 62269115 -90268144 + L1Md_F LINE L1 217 2441 -3442 3 1060 2772 23 2 209 chr5 62269115 62269604 -90267655 + RLTR10 LTR ERVK 1 388 -2 3 1060 15772 32 18 29 chr5 62269606 62271584 -90265675 + RLTR10-int LTR ERVK 1 1984 -3 3 1060 2772 23 2 209 chr5 62271586 62272075 -90265184 + RLTR10 LTR ERVK 1 388 -2 3 1060 22135 88 2 19 chr5 62272077 62274110 -90263149 + L1Md_F2 LINE L1 2436 4436 -1447 3 1060 1162 54 0 13 chr5 62274110 62274259 -90263000 + B1_Mm SINE Alu 1 147 0 3 1060 22135 88 2 19 chr5 62274259 62275429 -90261830 + L1Md_F2 LINE L1 4437 5585 -298 3 1060 7689 70 0 3 chr5 62275430 62276425 -90260834 + L1Md_F2 LINE L1 5587 6578 -4 3 1060 399 113 0 0 chr5 62276438 62276500 -90260759 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1060 31 26 0 0 chr5 62277365 62277403 -90259856 + AT_rich Low_complexity Low_complexity 1 38 0 3 1060 22 35 0 0 chr5 62277815 62277844 -90259415 + AT_rich Low_complexity Low_complexity 1 29 0 4 1060 2143 261 79 67 chr5 62279237 62280074 -90257185 + RMER13A LTR ERVK 14 860 0 4 1060 796 295 67 10 chr5 62280134 62280432 -90256827 - Lx8 LINE L1 -23 7450 7136 4 1060 1113 260 170 5 chr5 62280442 62280554 -90256705 - Lx9 LINE L1 -7 7637 7462 4 1060 402 21 0 0 chr5 62280554 62280601 -90256658 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1060 1113 260 170 5 chr5 62280601 62280917 -90256342 - Lx9 LINE L1 -183 7461 7140 4 1060 717 312 110 9 chr5 62280946 62281382 -90255877 - L1_Rod LINE L1 -36 5811 5332 4 1060 321 68 0 0 chr5 62281391 62281435 -90255824 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 4 1060 1138 313 90 8 chr5 62281435 62281934 -90255325 - Lx5 LINE L1 -69 7391 6483 4 1060 3096 61 8 0 chr5 62281934 62282327 -90254932 + MTA_Mm LTR MaLR 1 396 0 4 1060 9027 43 5 0 chr5 62282327 62283420 -90253839 + MTA_Mm-int LTR MaLR 1 1098 0 4 1060 1538 218 35 19 chr5 62283422 62283791 -90253468 - Lx5 LINE L1 -1020 6030 5656 4 1060 259 273 124 8 chr5 62283792 62283921 -90253338 - L1_Rod LINE L1 -541 5306 5163 4 1060 338 266 16 74 chr5 62284039 62284161 -90253098 + RMER15-int LTR ERVL 4846 4960 -39 4 1060 1560 204 91 8 chr5 62284214 62284565 -90252694 + Lx2B LINE L1 6189 6568 -432 4 1060 4226 103 28 62 chr5 62284565 62284749 -90252510 + RMER17A LTR ERVK 1 183 -568 4 1060 1131 69 7 0 chr5 62284749 62284894 -90252365 + B1_Mm SINE Alu 2 147 0 4 1060 4226 103 28 62 chr5 62284894 62285471 -90251788 + RMER17A LTR ERVK 184 736 -15 4 1060 1321 229 78 22 chr5 62285503 62285824 -90251435 + Lx2B LINE L1 6564 6902 -98 4 1060 336 102 0 0 chr5 62285825 62285874 -90251385 + (TAAG)n Simple_repeat Simple_repeat 3 51 0 4 1060 534 299 18 6 chr5 62286360 62286528 -90250731 - ORR1D2 LTR MaLR 0 370 201 4 1060 27 81 0 0 chr5 62286594 62286656 -90250603 + AT_rich Low_complexity Low_complexity 1 62 0 4 1060 412 309 18 9 chr5 62286659 62286770 -90250489 - ORR1D2 LTR MaLR -258 112 1 4 1060 188 34 0 33 chr5 62287183 62287213 -90250046 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1060 207 0 0 0 chr5 62287255 62287278 -90249981 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1060 246 62 0 0 chr5 62288037 62288069 -90249190 + (TA)n Simple_repeat Simple_repeat 2 33 0 4 1060 271 294 33 0 chr5 62289220 62289312 -90247947 - Lx8 LINE L1 -1540 5933 5839 4 1060 429 252 40 115 chr5 62289432 62289580 -90247679 - ID_B1 SINE B4 -6 218 82 4 1060 2238 44 0 0 chr5 62289738 62290009 -90247250 + L1Md_T LINE L1 6312 6582 0 4 1060 1895 98 21 0 chr5 62290177 62290463 -90246796 + Lx3_Mus LINE L1 6718 7009 0 4 1060 396 55 0 0 chr5 62290602 62290657 -90246602 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1060 560 325 4 71 chr5 62290663 62290888 -90246371 + B3 SINE B2 6 215 -1 4 1060 2372 279 65 16 chr5 62291679 62292574 -90244685 - Lx9 LINE L1 0 7644 6706 4 1060 246 265 0 0 chr5 62292576 62292625 -90244634 + Lx9 LINE L1 6588 6636 -1008 4 1060 426 355 74 0 chr5 62292645 62292834 -90244425 - B3 SINE B2 0 216 14 4 1060 207 0 0 0 chr5 62293075 62293098 -90244161 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1060 1661 264 101 36 chr5 62293334 62293979 -90243280 + RMER6C LTR ERVK 1 687 -3 4 1060 31 44 0 0 chr5 62293992 62294037 -90243222 + AT_rich Low_complexity Low_complexity 1 45 0 4 1060 225 281 65 48 chr5 62294049 62294217 -90243042 - L1_Mur3 LINE L1 -2468 3412 3242 4 1060 1342 87 0 11 chr5 62294349 62294535 -90242724 - B2_Mm2 SINE B2 -10 185 2 4 1060 1631 245 49 16 chr5 62294618 62295004 -90242255 + MTC LTR MaLR 15 413 -8 4 1060 2372 119 6 6 chr5 62295174 62295523 -90241736 + L1_Mus3 LINE L1 6275 6624 -14 4 1060 441 0 0 0 chr5 62295523 62295572 -90241687 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1060 2372 119 6 6 chr5 62295572 62295586 -90241673 + L1_Mus3 LINE L1 6625 6638 0 4 1060 26 30 0 0 chr5 62295882 62295915 -90241344 + AT_rich Low_complexity Low_complexity 1 33 0 4 1060 756 307 97 0 chr5 62296541 62296798 -90240461 - MTD LTR MaLR -97 322 41 4 1060 243 358 12 0 chr5 62296799 62296880 -90240379 + B4A SINE B4 42 123 -169 4 1060 1920 114 3 11 chr5 62298716 62298999 -90238260 - L1_Mus2 LINE L1 -324 6242 5962 4 1060 2292 84 3 15 chr5 62299000 62299325 -90237934 + L1_Mus2 LINE L1 6246 6566 0 4 1060 441 0 0 0 chr5 62299387 62299436 -90237823 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1060 342 312 139 39 chr5 62299458 62299638 -90237621 - B3A SINE B2 0 198 1 4 1060 881 77 0 0 chr5 62300084 62300201 -90237058 + B1_Mm SINE Alu 29 145 -2 4 1060 25 0 0 0 chr5 62300201 62300226 -90237033 + AT_rich Low_complexity Low_complexity 1 25 0 4 1060 21 0 0 0 chr5 62300288 62300309 -90236950 + AT_rich Low_complexity Low_complexity 1 21 0 4 1060 576 248 0 0 chr5 62300657 62300770 -90236489 - B3 SINE B2 -103 113 1 4 1060 4339 57 6 2 chr5 62301001 62301550 -90235709 - L1Md_F2 LINE L1 -4 6578 6028 4 1060 7843 57 18 0 chr5 62301550 62302571 -90234688 - L1_Mm LINE L1 -712 5171 4133 4 1060 3527 171 47 109 chr5 62302755 62303334 -90233925 - L1_Mur2 LINE L1 -750 5127 4623 4 1060 376 44 42 52 chr5 62303334 62303430 -90233829 + (TTG)n Simple_repeat Simple_repeat 2 96 0 4 1060 3527 171 47 109 chr5 62303430 62303769 -90233490 - L1_Mur2 LINE L1 -1255 4622 4267 4 1060 441 0 0 0 chr5 62304649 62304698 -90232561 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4 1060 38510 4 0 0 chr5 62305241 62310821 -90226438 + L1Md_A LINE L1 7 5586 -297 4 1060 8988 2 0 11 chr5 62310821 62311854 -90225405 + L1Md_A LINE L1 5587 6582 0 4 1060 180 0 0 0 chr5 62311868 62311888 -90225371 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1060 25 75 0 0 chr5 62311973 62312026 -90225233 + AT_rich Low_complexity Low_complexity 1 53 0 4 1060 2515 61 99 8 chr5 62312564 62312927 -90224332 + MTA_Mm LTR MaLR 1 396 0 4 1060 23 0 0 0 chr5 62313695 62313718 -90223541 + AT_rich Low_complexity Low_complexity 1 23 0 4 1060 23 33 0 0 chr5 62313816 62313846 -90223413 + AT_rich Low_complexity Low_complexity 1 30 0 4 1060 33 25 0 0 chr5 62314314 62314354 -90222905 + AT_rich Low_complexity Low_complexity 1 40 0 4 1060 427 172 0 29 chr5 62314754 62314856 -90222403 + CT-rich Low_complexity Low_complexity 3 101 0 4 1060 798 232 39 17 chr5 62314868 62315048 -90222211 - RLTR28B LTR ERVL -297 184 1 4 1060 35 24 0 0 chr5 62315114 62315156 -90222103 + AT_rich Low_complexity Low_complexity 1 42 0 4 1060 21 36 0 0 chr5 62315176 62315204 -90222055 + AT_rich Low_complexity Low_complexity 1 28 0 4 1060 305 227 0 62 chr5 62315540 62315620 -90221639 - Lx2 LINE L1 -340 6657 6583 4 1060 391 247 155 19 chr5 62315608 62315769 -90221490 + Lx2B LINE L1 6805 6987 -13 4 1060 1045 305 65 17 chr5 62315794 62316208 -90221051 + Lx8 LINE L1 6521 6954 -519 4 1060 2372 193 41 11 chr5 62316281 62316846 -90220413 - L1_Mur3 LINE L1 -640 5240 4659 4 1060 628 305 60 39 chr5 62316853 62317136 -90220123 - Lx6 LINE L1 -26 7434 7146 4 1060 2196 117 55 6 chr5 62317203 62317546 -90219713 - Lx3A LINE L1 0 6981 6622 4 1060 356 175 28 37 chr5 62317553 62317660 -90219599 - L1_Mur3 LINE L1 -1211 4666 4561 4 1060 555 139 19 15 chr5 62317941 62318055 -90219204 - ORR1A4 LTR MaLR -221 157 1 4 1060 246 317 79 31 chr5 62318748 62318875 -90218384 - RMER15 LTR ERVL -102 473 341 4 1060 4561 118 35 32 chr5 62319109 62319852 -90217407 + L1_Mus4 LINE L1 5890 6634 -2 4 1060 26 30 0 0 chr5 62319917 62319950 -90217309 + AT_rich Low_complexity Low_complexity 1 33 0 4 1060 794 35 0 17 chr5 62320267 62320385 -90216874 - L1Md_F2 LINE L1 0 6582 6467 4 1060 21 57 0 0 chr5 62320743 62320778 -90216481 + AT_rich Low_complexity Low_complexity 1 35 0 4 1060 1153 75 0 0 chr5 62320788 62320935 -90216324 + B1_Mus2 SINE Alu 1 147 0 4 1060 1703 134 38 0 chr5 62321179 62321441 -90215818 + L1_Mur1 LINE L1 5411 5682 -204 4 1060 236 372 0 0 chr5 62321900 62321978 -90215281 - ID4 SINE ID -3 80 3 4 1060 233 390 32 32 chr5 62322037 62322225 -90215034 + L2 LINE L2 2094 2281 -1138 4 1060 3632 151 7 3 chr5 62322368 62322978 -90214281 - Lx3B LINE L1 -3 6970 6359 4 1060 438 20 0 0 chr5 62323215 62323266 -90213993 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 4 1060 657 268 53 10 chr5 62323744 62323951 -90213308 + RLTR45 LTR ERVK 265 480 -2 4 1060 391 328 45 6 chr5 62325005 62325183 -90212076 - MER31A LTR ERV1 -219 266 82 4 1060 613 276 64 39 chr5 62325655 62325746 -90211513 - L1M2 LINE L1 -1747 4396 4313 4 1060 3690 112 27 2 chr5 62325746 62326293 -90210966 + Lx2A LINE L1 6448 7008 0 4 1060 613 276 64 39 chr5 62326293 62326559 -90210700 - L1M2 LINE L1 -1831 4312 4030 4 1060 263 85 0 21 chr5 62326608 62326656 -90210603 + (TTA)n Simple_repeat Simple_repeat 3 49 0 4 1060 1226 296 72 22 chr5 62327719 62328165 -90209094 - Lx6 LINE L1 -5 7455 6988 4 1060 2851 92 5 5 chr5 62328254 62328649 -90208610 - MTA_Mm LTR MaLR -1 395 1 4 1060 803 150 7 0 chr5 62328704 62328857 -90208402 + Lx2 LINE L1 6843 6996 -1 4 1060 437 163 23 23 chr5 62329487 62329498 -90207761 + URR1B DNA MER1_type 137 148 -77 4 1060 2725 113 12 12 chr5 62329498 62329927 -90207332 - Lx2A LINE L1 -4 7004 6576 4 1060 437 163 23 23 chr5 62329927 62330003 -90207256 + URR1B DNA MER1_type 149 224 -1 4 1060 422 376 34 21 chr5 62330003 62330227 -90207032 - RMER15 LTR ERVL -70 505 279 4 1060 434 300 47 54 chr5 62330436 62330584 -90206675 + RSINE1 SINE B4 4 150 -15 4 1060 309 100 0 0 chr5 62330592 62330642 -90206617 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1060 548 313 16 57 chr5 62331295 62331488 -90205771 + B3 SINE B2 4 188 -28 4 1060 279 0 0 0 chr5 62331490 62331521 -90205738 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 4 1060 29 78 0 0 chr5 62331705 62331769 -90205490 + AT_rich Low_complexity Low_complexity 1 64 0 4 1060 276 95 0 0 chr5 62332357 62332399 -90204860 - L1_Mur2 LINE L1 -1475 4402 4361 4 1060 4168 137 5 49 chr5 62333437 62334213 -90203046 - L1_Mur2 LINE L1 -1511 4366 3625 4 1060 4490 157 22 0 chr5 62334213 62334973 -90202286 + Lx2 LINE L1 6220 6996 -1 4 1060 30 69 0 0 chr5 62335257 62335315 -90201944 + AT_rich Low_complexity Low_complexity 1 58 0 4 1060 378 94 0 0 chr5 62335654 62335718 -90201541 + (T)n Simple_repeat Simple_repeat 1 64 0 4 1060 1948 140 76 3 chr5 62336049 62336378 -90200881 + Lx LINE L1 6290 6642 -12 4 1060 330 26 0 0 chr5 62336515 62336554 -90200705 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1060 261 0 0 0 chr5 62336554 62336582 -90200677 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1060 2116 32 0 12 chr5 62337035 62337291 -90199968 - L1Md_F2 LINE L1 -12 6570 6318 5 1060 345 24 0 0 chr5 62337592 62337634 -90199625 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1060 4129 17 0 2 chr5 62337693 62338167 -90199092 + L1Md_A LINE L1 6110 6582 0 5 1060 22 35 0 0 chr5 62339191 62339220 -90198039 + AT_rich Low_complexity Low_complexity 1 29 0 5 1060 423 0 0 0 chr5 62339412 62339459 -90197800 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 1060 1079 75 0 26 chr5 62339462 62339613 -90197646 - B1_Mus1 SINE Alu 0 148 2 5 1060 1126 258 53 3 chr5 62340451 62340750 -90196509 + Lx6 LINE L1 7085 7398 -62 5 1060 242 298 46 37 chr5 62340953 62341061 -90196198 - Lx6 LINE L1 -653 6397 6289 5 1060 2176 231 13 19 chr5 62341054 62341762 -90195497 - Lx6 LINE L1 -1358 6102 5398 5 1060 1043 320 81 29 chr5 62341760 62342234 -90195025 + Lx6 LINE L1 6507 7378 -82 5 1060 417 20 0 0 chr5 62342958 62343008 -90194251 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1060 396 0 0 0 chr5 62343210 62343254 -90194005 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1060 6988 66 4 2 chr5 62343264 62344163 -90193096 - L1_Mus1 LINE L1 -1 6566 5666 5 1060 240 62 0 0 chr5 62344158 62344190 -90193069 + MusHAL1 LINE L1 1747 1778 -934 5 1060 1119 82 0 0 chr5 62345020 62345167 -90192092 + B1_Mus1 SINE Alu 1 147 -1 5 1060 414 0 0 0 chr5 62345168 62345214 -90192045 + (GA)n Simple_repeat Simple_repeat 1 46 0 5 1060 27 0 0 0 chr5 62345272 62345299 -90191960 + AT_rich Low_complexity Low_complexity 1 27 0 5 1060 684 67 0 0 chr5 62345310 62345400 -90191859 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 5 1060 285 234 13 0 chr5 62345426 62345503 -90191756 - Lx3B LINE L1 -2 6971 6894 5 1060 494 43 14 0 chr5 62345645 62345714 -90191545 + (TTATA)n Simple_repeat Simple_repeat 1 70 0 5 1060 1560 261 147 140 chr5 62346890 62347293 -90189966 + Lx4B LINE L1 6131 6558 -500 5 1060 678 106 7 3 chr5 62347293 62347407 -90189852 + B1_Mus2 SINE Alu 23 139 -10 5 1060 720 0 0 0 chr5 62347407 62347487 -90189772 + (GA)n Simple_repeat Simple_repeat 2 81 0 5 1060 1560 261 147 140 chr5 62347487 62347885 -90189374 + Lx4B LINE L1 6559 7053 -5 5 1060 28 0 0 26 chr5 62347885 62347898 -90189361 + AT_rich Low_complexity Low_complexity 1 13 0 5 1060 512 81 35 0 chr5 62347898 62347984 -90189275 + L1Md_F2 LINE L1 6475 6563 -19 5 1060 28 0 0 26 chr5 62347984 62348009 -90189250 + AT_rich Low_complexity Low_complexity 1 25 0 5 1060 2284 224 46 54 chr5 62348333 62349050 -90188209 - Lx9 LINE L1 -126 7518 6808 5 1060 4837 183 24 6 chr5 62349079 62350026 -90187233 - L1_Mur2 LINE L1 -694 5183 4220 5 1060 3132 19 0 5 chr5 62350026 62350396 -90186863 - L1Md_F2 LINE L1 -615 5967 5600 5 1060 3945 64 2 0 chr5 62350394 62350895 -90186364 + L1Md_F2 LINE L1 5106 5607 -276 5 1060 4422 178 96 34 chr5 62350891 62351822 -90185437 - L1_Mur2 LINE L1 -2871 3006 2049 5 1060 384 22 0 0 chr5 62351822 62351867 -90185392 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1060 4422 178 96 34 chr5 62351867 62352040 -90185219 - L1_Mur2 LINE L1 -3829 2048 1834 5 1060 549 211 0 66 chr5 62352040 62352162 -90185097 - B1_Mur4 SINE Alu -19 131 18 5 1060 195 69 0 0 chr5 62352301 62352330 -90184929 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1060 186 43 0 0 chr5 62354724 62354747 -90182512 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1060 3002 67 0 10 chr5 62355076 62355471 -90181788 + L1Md_F2 LINE L1 6180 6570 -12 5 1060 929 324 44 6 chr5 62355707 62356070 -90181189 - MTE2a LTR MaLR -2 377 1 5 1060 24 0 0 0 chr5 62356214 62356238 -90181021 + AT_rich Low_complexity Low_complexity 1 24 0 5 1060 581 339 27 0 chr5 62356351 62356572 -90180687 - Lx8 LINE L1 -143 7330 7104 5 1060 227 338 72 33 chr5 62356641 62356794 -90180465 - Lx8 LINE L1 -475 6998 6840 5 1060 595 298 62 14 chr5 62356984 62357192 -90180067 - RLTR45 LTR ERVK 0 482 265 5 1060 393 337 42 42 chr5 62357498 62357712 -90179547 - Lx8 LINE L1 -957 6516 6303 5 1060 610 284 128 56 chr5 62357726 62358032 -90179227 - ORR1D1 LTR MaLR -2 372 45 5 1060 488 287 35 23 chr5 62358196 62358398 -90178861 + MTE-int LTR MaLR 1 122 -1248 5 1060 265 315 0 112 chr5 62358429 62358554 -90178705 - RSINE1 SINE B4 -50 115 5 5 1060 972 335 149 25 chr5 62359236 62359753 -90177506 + MTE-int LTR MaLR 721 1301 -279 5 1060 354 23 0 0 chr5 62359801 62359844 -90177415 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1060 3881 77 14 0 chr5 62361063 62361583 -90175676 - L1_Mus2 LINE L1 -1 6565 6039 5 1060 797 344 49 22 chr5 62361659 62362059 -90175200 - Lx6 LINE L1 -164 7296 6506 5 1060 709 329 13 4 chr5 62362095 62362330 -90174929 - Lx6 LINE L1 -689 6361 6125 5 1060 329 379 83 10 chr5 62362894 62363099 -90174160 - MTE-int LTR MaLR -423 1157 938 5 1060 27 62 0 0 chr5 62364483 62364531 -90172728 + AT_rich Low_complexity Low_complexity 1 48 0 5 1060 28 86 0 0 chr5 62364622 62364692 -90172567 + AT_rich Low_complexity Low_complexity 1 70 0 5 1060 302 287 0 44 chr5 62364956 62365047 -90172212 - MER34A1 LTR ERV1 -500 87 1 5 1060 26 50 0 0 chr5 62365438 62365478 -90171781 + AT_rich Low_complexity Low_complexity 1 40 0 5 1060 537 0 41 0 chr5 62367069 62367142 -90170117 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1060 943 294 46 52 chr5 62367343 62367364 -90169895 + Lx9 LINE L1 6646 6664 -980 5 1060 927 257 111 28 chr5 62367364 62367585 -90169674 + ORR1C2 LTR MaLR 4 251 -133 5 1060 254 29 29 0 chr5 62367585 62367620 -90169639 + (CCTG)n Simple_repeat Simple_repeat 3 38 0 5 1060 927 257 111 28 chr5 62367620 62367750 -90169509 + ORR1C2 LTR MaLR 252 384 0 5 1060 943 294 46 52 chr5 62367750 62368187 -90169072 + Lx9 LINE L1 6665 7101 -543 5 1060 462 303 92 28 chr5 62368246 62368463 -90168796 + Lx9 LINE L1 7222 7452 -192 5 1060 296 311 67 0 chr5 62368893 62368983 -90168276 + Tigger7 DNA MER2_type 1 96 -2395 5 1060 3724 226 47 26 chr5 62369096 62370070 -90167189 - Lx2B LINE L1 -78 6922 5928 5 1060 1658 207 30 103 chr5 62370067 62370352 -90166907 + L1_Mur1 LINE L1 5447 5703 -183 5 1060 1118 62 14 0 chr5 62370352 62370497 -90166762 - B1_Mus1 SINE Alu 0 148 2 5 1060 1658 207 30 103 chr5 62370497 62370686 -90166573 + L1_Mur1 LINE L1 5704 5886 0 5 1060 250 372 45 23 chr5 62370715 62370847 -90166412 + Tigger7 DNA MER2_type 255 389 -2102 5 1060 207 0 0 0 chr5 62370933 62370956 -90166303 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1060 242 333 0 0 chr5 62370960 62371035 -90166224 - B1_Mur1 SINE Alu -32 117 43 5 1060 301 265 0 0 chr5 62371265 62371333 -90165926 + HAL1-3A_ME LINE L1 1951 2018 -840 5 1060 507 33 0 0 chr5 62372578 62372639 -90164620 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1060 6736 104 47 12 chr5 62373235 62374874 -90162385 - L1_Mus3 LINE L1 -1 6637 4955 5 1060 587 129 0 0 chr5 62374871 62374964 -90162295 + L1_Mus3 LINE L1 6052 6144 -494 5 1060 691 224 141 15 chr5 62375283 62375482 -90161777 + URR1B DNA MER1_type 2 225 0 5 1060 957 95 15 0 chr5 62375816 62375953 -90161306 + B1_Mus1 SINE Alu 2 140 -8 5 1060 234 206 0 0 chr5 62376217 62376280 -90160979 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 5 1060 279 0 0 0 chr5 62376785 62376816 -90160443 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 1060 23 33 0 0 chr5 62377038 62377068 -90160191 + AT_rich Low_complexity Low_complexity 1 30 0 5 1060 259 307 75 45 chr5 62377146 62377279 -90159980 - Lx7 LINE L1 -745 6951 6815 5 1060 34 24 0 0 chr5 62377340 62377381 -90159878 + AT_rich Low_complexity Low_complexity 1 41 0 5 1060 576 73 0 0 chr5 62377958 62378040 -90159219 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 1060 232 322 44 97 chr5 62378264 62378309 -90158950 - Lx9 LINE L1 -446 7198 7150 5 1060 209 57 0 28 chr5 62378309 62378345 -90158914 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1060 232 322 44 97 chr5 62378345 62378526 -90158733 - Lx9 LINE L1 -495 7149 6984 5 1060 357 75 0 0 chr5 62378537 62378590 -90158669 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1060 1884 288 121 28 chr5 62378602 62379562 -90157697 + Lx6 LINE L1 6169 7438 -22 5 1060 1800 142 68 46 chr5 62379796 62379912 -90157347 - Lx LINE L1 0 6654 6518 5 1060 450 53 0 0 chr5 62379912 62379969 -90157290 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1060 1800 142 68 46 chr5 62379969 62380222 -90157037 - Lx LINE L1 -137 6517 6278 5 1060 6023 159 9 1 chr5 62380193 62381472 -90155787 - Lx LINE L1 -580 6074 4781 5 1060 183 114 0 0 chr5 62381477 62381512 -90155747 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1060 7103 100 1 1 chr5 62381568 62382896 -90154363 - L1_Mus2 LINE L1 0 6566 5239 5 1060 5507 126 7 44 chr5 62382893 62384325 -90152934 - L1_Mus2 LINE L1 -3770 2113 744 5 1060 463 262 32 58 chr5 62384334 62384562 -90152697 - L1_Mus2 LINE L1 -5776 840 667 5 1060 3465 159 8 29 chr5 62384579 62385241 -90152018 - L1_Mur2 LINE L1 -1097 4780 4133 5 1060 701 122 0 0 chr5 62385236 62385343 -90151916 + L1_Mur2 LINE L1 4025 4131 -1746 5 1060 226 326 82 11 chr5 62386254 62386437 -90150822 - ORR1D-int LTR MaLR -162 1208 1013 5 1060 8032 143 27 1 chr5 62386437 62387735 -90149524 + Lx3C LINE L1 5644 6974 -2 5 1060 295 225 28 0 chr5 62387797 62387868 -90149391 + MTEb LTR MaLR 307 379 0 5 1060 424 316 19 37 chr5 62387987 62388148 -90149111 + MER21B LTR ERV1 583 740 -123 5 1060 21 0 0 0 chr5 62388400 62388421 -90148838 + AT_rich Low_complexity Low_complexity 1 21 0 5 1060 459 134 0 0 chr5 62389366 62389448 -90147811 - L1Md_F3 LINE L1 -2 6582 6501 5 1060 195 316 99 57 chr5 62389806 62389947 -90147312 - MIR SINE MIR -11 251 105 5 1060 396 0 0 0 chr5 62390085 62390129 -90147130 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1061 1551 191 49 0 chr5 62390497 62390801 -90146458 - ORR1A3 LTR MaLR 0 326 8 5 1061 540 111 0 0 chr5 62391229 62391310 -90145949 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 1061 603 62 0 0 chr5 62391354 62391434 -90145825 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 1061 258 348 164 30 chr5 62391549 62391780 -90145479 + MLT2B3 LTR ERVL 6 267 -287 5 1061 5687 149 14 4 chr5 62392164 62393116 -90144143 + Lx2 LINE L1 5687 6645 -352 5 1061 1087 191 46 0 chr5 62393114 62393308 -90143951 + Lx2 LINE L1 6775 6977 -20 5 1061 2310 138 22 22 chr5 62393308 62393450 -90143809 + Lx LINE L1 6235 6377 -277 5 1061 3180 48 8 0 chr5 62393450 62393843 -90143416 + MTA_Mm LTR MaLR 1 396 0 5 1061 8932 48 2 0 chr5 62393843 62394939 -90142320 + MTA_Mm-int LTR MaLR 1 1098 0 5 1061 3149 68 5 0 chr5 62394939 62395333 -90141926 + MTA_Mm LTR MaLR 1 396 0 5 1061 2310 138 22 22 chr5 62395333 62395602 -90141657 + Lx LINE L1 6378 6646 -8 5 1061 288 282 33 33 chr5 62399081 62399202 -90138057 + L1M3a LINE L1 94 214 -5741 5 1061 22 0 0 0 chr5 62399217 62399239 -90138020 + AT_rich Low_complexity Low_complexity 1 22 0 5 1061 32 0 0 0 chr5 62400019 62400051 -90137208 + AT_rich Low_complexity Low_complexity 1 32 0 5 1061 29 0 0 0 chr5 62400883 62400912 -90136347 + AT_rich Low_complexity Low_complexity 1 29 0 5 1061 528 93 0 0 chr5 62401775 62401850 -90135409 + (TA)n Simple_repeat Simple_repeat 2 76 0 6 1061 22 35 0 0 chr5 62401857 62401886 -90135373 + AT_rich Low_complexity Low_complexity 1 29 0 6 1061 30 0 0 0 chr5 62402085 62402115 -90135144 + AT_rich Low_complexity Low_complexity 1 30 0 6 1061 432 345 40 40 chr5 62402303 62402581 -90134678 - MLT2B4 LTR ERVL 0 556 279 6 1061 5682 137 27 59 chr5 62402704 62404342 -90132917 - Lx LINE L1 0 6654 5088 6 1061 1787 152 51 0 chr5 62404338 62404673 -90132586 + Lx LINE L1 4758 5109 -774 6 1061 22 0 0 0 chr5 62404977 62404999 -90132260 + AT_rich Low_complexity Low_complexity 1 22 0 6 1061 420 337 93 36 chr5 62405291 62405485 -90131774 + ID_B1 SINE B4 19 223 -1 6 1061 359 330 57 133 chr5 62405800 62406101 -90131158 - B4 SINE B4 0 292 15 6 1061 2361 219 29 2 chr5 62406603 62407084 -90130175 + Lx5 LINE L1 6478 6971 -79 6 1061 201 176 0 0 chr5 62407110 62407144 -90130115 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 6 1061 24 53 0 0 chr5 62407338 62407376 -90129883 + AT_rich Low_complexity Low_complexity 1 38 0 6 1061 554 83 216 27 chr5 62408987 62409098 -90128161 + MusHAL1 LINE L1 1728 1859 -853 6 1061 417 342 18 0 chr5 62409237 62409348 -90127911 - PB1D10 SINE Alu -2 115 3 6 1061 388 241 25 0 chr5 62409465 62409544 -90127715 - ID4_ SINE ID -2 81 1 6 1061 919 140 6 6 chr5 62409991 62410163 -90127096 + GA-rich Low_complexity Low_complexity 3 174 0 6 1061 1800 295 41 76 chr5 62410691 62411400 -90125859 - MER67C LTR ERV1 -2 709 26 6 1061 687 25 0 0 chr5 62411508 62411589 -90125670 + (GA)n Simple_repeat Simple_repeat 2 82 0 6 1061 353 244 108 8 chr5 62412368 62412488 -90124771 + MER58B DNA MER1_type 142 273 -68 6 1061 537 340 33 0 chr5 62413008 62413161 -90124098 + B3 SINE B2 3 160 -56 6 1061 1021 259 132 6 chr5 62413216 62413290 -90123969 + ORR1D1 LTR MaLR 1 76 -298 6 1061 2125 74 14 3 chr5 62413290 62413575 -90123684 - L1_Mus1 LINE L1 0 6567 6280 6 1061 1021 259 132 6 chr5 62413575 62413826 -90123433 + ORR1D1 LTR MaLR 77 366 -8 6 1061 999 261 90 28 chr5 62414097 62414198 -90123061 + ORR1D1 LTR MaLR 63 163 -211 6 1061 198 0 0 0 chr5 62414198 62414220 -90123039 + (TC)n Simple_repeat Simple_repeat 2 23 0 6 1061 999 261 90 28 chr5 62414220 62414406 -90122853 + ORR1D1 LTR MaLR 164 367 -7 6 1061 1311 208 11 15 chr5 62414441 62414709 -90122550 - ORR1B2 LTR MaLR 0 367 101 6 1061 1714 155 50 34 chr5 62415494 62415814 -90121445 - ORR1A2 LTR MaLR 0 327 3 6 1061 5071 158 25 19 chr5 62415816 62416728 -90120531 - ORR1A2-int LTR MaLR 0 1963 1046 6 1061 7233 38 3 2 chr5 62416728 62417599 -90119660 - L1Md_F3 LINE L1 -41 6543 5672 6 1061 4208 195 89 38 chr5 62417600 62418647 -90118612 - ORR1A2-int LTR MaLR -863 1100 1 6 1061 1869 143 42 7 chr5 62418647 62418956 -90118303 - ORR1A2 LTR MaLR 0 327 8 6 1061 25 31 0 0 chr5 62419628 62419660 -90117599 + AT_rich Low_complexity Low_complexity 1 32 0 6 1061 921 123 0 0 chr5 62419968 62420147 -90117112 + (CAAAC)n Simple_repeat Simple_repeat 1 179 0 6 1061 35567 27 14 20 chr5 62420760 62425206 -90112053 + L1Md_A LINE L1 462 4932 -951 6 1061 229 183 46 77 chr5 62425206 62425271 -90111988 - RMER20A LTR ERVK -268 248 186 6 1061 35567 27 14 20 chr5 62425271 62425920 -90111339 + L1Md_A LINE L1 4933 5586 -297 6 1061 8632 23 0 0 chr5 62425920 62426916 -90110343 + L1Md_A LINE L1 5587 6582 0 6 1061 2853 18 0 0 chr5 62426921 62427249 -90110010 + L1Md_A LINE L1 5259 5586 -297 6 1061 8265 36 0 1 chr5 62427249 62428245 -90109014 + L1Md_A LINE L1 5587 6581 -1 6 1061 315 0 0 0 chr5 62428326 62428361 -90108898 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1061 198 0 0 0 chr5 62428358 62428380 -90108879 + (CTTTG)n Simple_repeat Simple_repeat 3 24 0 6 1061 1125 82 0 0 chr5 62428396 62428542 -90108717 - B1_Mus2 SINE Alu 0 147 2 6 1061 1896 114 12 21 chr5 62428554 62428870 -90108389 - L1_Mus4 LINE L1 -44 6610 6268 6 1061 618 0 69 0 chr5 62429198 62429285 -90107974 + (CAAAA)n Simple_repeat Simple_repeat 2 94 0 6 1061 516 16 0 0 chr5 62429506 62429567 -90107692 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1061 459 0 0 0 chr5 62429567 62429617 -90107642 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1061 23 0 0 0 chr5 62429970 62429993 -90107266 + AT_rich Low_complexity Low_complexity 1 23 0 6 1061 259 288 0 0 chr5 62430183 62430249 -90107010 + (TATG)n Simple_repeat Simple_repeat 2 67 0 6 1061 508 283 66 27 chr5 62430915 62431173 -90106086 + Lx7 LINE L1 5607 5904 -1792 6 1061 4766 73 5 0 chr5 62431441 62432075 -90105184 + L1_Mus1 LINE L1 5931 6567 0 6 1061 352 316 99 43 chr5 62432163 62432467 -90104792 + Lx7 LINE L1 6084 6404 -1069 6 1061 339 222 12 36 chr5 62432858 62432932 -90104327 - RLTR20B2 LTR ERVK -14 563 492 6 1061 2407 137 94 5 chr5 62432932 62433358 -90103901 + Lx LINE L1 6185 6648 -6 6 1061 201 59 88 0 chr5 62433367 62433401 -90103858 + (CAGAGA)n Simple_repeat Simple_repeat 5 41 0 6 1061 963 106 0 0 chr5 62433401 62433543 -90103716 + (GGAA)n Simple_repeat Simple_repeat 4 145 0 6 1061 2467 163 60 21 chr5 62433550 62434046 -90103213 - RLTR20B2 LTR ERVK -42 499 1 6 1061 423 246 83 17 chr5 62435233 62435353 -90101906 + RSINE1 SINE B4 5 132 -33 6 1061 458 61 15 0 chr5 62435386 62435452 -90101807 + (CATA)n Simple_repeat Simple_repeat 2 68 0 6 1061 265 224 0 17 chr5 62435635 62435694 -90101565 + MTD LTR MaLR 1 58 -363 6 1061 381 75 0 0 chr5 62435849 62435902 -90101357 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1061 975 273 4 19 chr5 62435933 62436202 -90101057 + Lx7 LINE L1 7127 7391 -305 6 1061 458 331 42 18 chr5 62436202 62436356 -90100903 + MTD LTR MaLR 48 205 -214 6 1061 2398 232 52 33 chr5 62436356 62436970 -90100289 + RMER20B LTR ERVK 2 627 0 6 1061 618 274 39 11 chr5 62436985 62437166 -90100093 + MTD LTR MaLR 226 411 -8 6 1061 626 306 37 44 chr5 62437170 62437196 -90100063 + MTD-int LTR MaLR 1 29 -1229 6 1061 203 0 0 36 chr5 62437196 62437224 -90100035 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1061 626 306 37 44 chr5 62437224 62437470 -90099789 + MTD-int LTR MaLR 30 271 -987 6 1061 4464 96 39 57 chr5 62437470 62438196 -90099063 - Lx3_Mus LINE L1 -656 6353 5641 6 1061 4187 100 11 0 chr5 62438196 62438808 -90098451 + Lx3_Mus LINE L1 6386 7004 -5 6 1061 2516 251 78 82 chr5 62438821 62439775 -90097484 + MTD-int LTR MaLR 309 1258 0 6 1061 231 36 0 0 chr5 62439853 62439881 -90097378 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 6 1061 319 183 28 0 chr5 62439881 62439952 -90097307 - Lx4A LINE L1 -1 7057 6985 6 1061 224 189 38 0 chr5 62440042 62440095 -90097164 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 6 1061 624 207 30 24 chr5 62440098 62440266 -90096993 - RLTR18B LTR ERVK -127 385 217 6 1061 771 208 168 5 chr5 62440310 62440513 -90096746 - RLTR18B LTR ERVK -274 238 3 6 1061 364 246 45 94 chr5 62440516 62440711 -90096548 + MTE2a LTR MaLR 209 378 -1 6 1061 28 29 0 0 chr5 62440979 62441014 -90096245 + AT_rich Low_complexity Low_complexity 1 35 0 6 1061 22 70 0 0 chr5 62441176 62441219 -90096040 + AT_rich Low_complexity Low_complexity 1 43 0 6 1061 407 221 8 0 chr5 62441832 62441954 -90095305 + CT-rich Low_complexity Low_complexity 1 123 0 6 1061 287 271 8 24 chr5 62442219 62442344 -90094915 + CT-rich Low_complexity Low_complexity 1 123 0 6 1061 258 274 80 54 chr5 62442501 62442613 -90094646 - MLT1D LTR MaLR -390 115 1 6 1061 714 331 124 19 chr5 62442789 62443266 -90093993 + RMER5 LTR ERV1 1 527 -7 6 1061 23 54 0 0 chr5 62443950 62443987 -90093272 + AT_rich Low_complexity Low_complexity 1 37 0 6 1061 780 146 0 0 chr5 62444371 62444549 -90092710 + (GA)n Simple_repeat Simple_repeat 1 178 0 6 1061 466 143 12 58 chr5 62445010 62445181 -90092078 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 6 1061 198 0 0 0 chr5 62446866 62446888 -90090371 + (TTG)n Simple_repeat Simple_repeat 3 24 0 6 1061 1653 244 72 135 chr5 62447093 62447153 -90090106 - RMER19C LTR ERVK -2 609 578 6 1061 1104 88 0 0 chr5 62447153 62447300 -90089959 - B1_Mus2 SINE Alu 0 147 1 6 1061 1653 244 72 135 chr5 62447300 62447353 -90089906 - RMER19C LTR ERVK -34 577 521 6 1061 631 48 0 0 chr5 62447353 62447437 -90089822 + L1_Mus1 LINE L1 6482 6565 -2 6 1061 1653 244 72 135 chr5 62447437 62447972 -90089287 - RMER19C LTR ERVK -91 520 2 6 1061 276 77 0 0 chr5 62448073 62448112 -90089147 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1061 273 265 0 73 chr5 62448139 62448249 -90089010 + Lx7 LINE L1 7590 7691 -5 6 1061 567 107 0 0 chr5 62448492 62448576 -90088683 + (TTA)n Simple_repeat Simple_repeat 2 85 0 6 1061 521 323 21 11 chr5 62448654 62448845 -90088414 - Lx8 LINE L1 -422 7051 6859 6 1061 1756 266 49 22 chr5 62449984 62450647 -90086612 - L1_Rod LINE L1 -4461 1386 700 6 1061 180 111 0 0 chr5 62451515 62451542 -90085717 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1061 321 118 0 0 chr5 62451767 62451818 -90085441 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1061 207 0 0 0 chr5 62452035 62452058 -90085201 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1061 315 250 30 30 chr5 62452058 62452190 -90085069 + Lx9 LINE L1 7511 7642 -2 6 1061 5109 108 15 15 chr5 62452463 62453252 -90084007 - Lx LINE L1 -3 6651 5863 6 1061 23 33 0 0 chr5 62454034 62454064 -90083195 + AT_rich Low_complexity Low_complexity 1 30 0 6 1061 317 299 96 58 chr5 62454253 62454441 -90082818 - MLT1A1 LTR MaLR -195 213 19 6 1061 372 43 0 0 chr5 62454696 62454742 -90082517 + (CAGA)n Simple_repeat Simple_repeat 2 47 0 6 1061 360 0 0 0 chr5 62455040 62455080 -90082179 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1061 25 0 0 0 chr5 62455543 62455568 -90081691 + AT_rich Low_complexity Low_complexity 1 25 0 6 1061 297 0 0 0 chr5 62456072 62456105 -90081154 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6 1061 208 226 0 31 chr5 62456351 62456415 -90080844 + T-rich Low_complexity Low_complexity 2 63 0 6 1061 198 136 0 0 chr5 62456542 62456586 -90080673 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1061 2441 237 27 55 chr5 62456643 62457276 -90079983 + Lx7 LINE L1 6623 7237 -459 6 1061 2752 140 13 8 chr5 62457314 62457783 -90079476 - Lx LINE L1 -3 6651 6181 6 1061 472 155 0 0 chr5 62457786 62457870 -90079389 - Lx LINE L1 -584 6070 5987 6 1061 4570 152 22 71 chr5 62457867 62459074 -90078185 + Lx LINE L1 4888 6047 -519 6 1061 1169 55 7 0 chr5 62459074 62459220 -90078039 - B1_Mm SINE Alu 0 147 1 6 1061 2372 170 100 72 chr5 62459220 62459378 -90077881 + Lx LINE L1 6048 6182 -384 6 1061 1164 81 17 0 chr5 62459378 62459550 -90077709 + L1Md_F2 LINE L1 6407 6581 -1 6 1061 2372 170 100 72 chr5 62459550 62459571 -90077688 + Lx LINE L1 6183 6204 -362 6 1061 337 245 0 39 chr5 62459557 62459659 -90077600 + Lx7 LINE L1 7269 7366 -330 6 1061 713 254 71 61 chr5 62459697 62459991 -90077268 + Lx7 LINE L1 7364 7660 -36 6 1061 29 0 0 0 chr5 62460029 62460058 -90077201 + AT_rich Low_complexity Low_complexity 1 29 0 6 1061 216 175 0 0 chr5 62462353 62462393 -90074866 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1061 255 253 33 44 chr5 62463514 62463605 -90073654 + MLT1A0 LTR MaLR 2 91 -274 6 1061 459 178 96 44 chr5 62465940 62466075 -90071184 + Lx3A LINE L1 6840 6981 0 6 1061 313 125 31 15 chr5 62466075 62466140 -90071119 + GA-rich Low_complexity Low_complexity 4 69 0 6 1061 21 57 0 0 chr5 62467353 62467388 -90069871 + AT_rich Low_complexity Low_complexity 1 35 0 7 1061 440 292 57 129 chr5 62468385 62468719 -90068540 + RLTR18 LTR ERVK 1 310 -306 7 1061 268 322 48 24 chr5 62468823 62468947 -90068312 + RLTR18 LTR ERVK 363 489 -127 7 1061 24 53 0 0 chr5 62469957 62469995 -90067264 + AT_rich Low_complexity Low_complexity 1 38 0 7 1061 217 227 19 58 chr5 62470082 62470185 -90067074 + (TATAA)n Simple_repeat Simple_repeat 1 99 0 7 1061 306 143 13 25 chr5 62470213 62470292 -90066967 + (TA)n Simple_repeat Simple_repeat 2 79 0 7 1061 423 0 0 0 chr5 62471258 62471305 -90065954 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1061 638 318 214 24 chr5 62471365 62471824 -90065435 + Lx8 LINE L1 6868 7415 -58 7 1061 347 276 176 35 chr5 62471824 62472199 -90065060 + Lx8 LINE L1 4671 5098 -1045 7 1061 918 209 223 26 chr5 62472199 62472548 -90064711 - MTC LTR MaLR -24 383 1 7 1061 804 290 57 7 chr5 62472588 62472909 -90064350 + Lx8 LINE L1 5537 5847 0 7 1061 1338 212 89 10 chr5 62472924 62473238 -90064021 - MTC LTR MaLR 0 421 83 7 1061 2655 144 59 64 chr5 62473264 62473792 -90063467 - Lx3C LINE L1 -9 6967 6443 7 1061 398 264 0 0 chr5 62473792 62473883 -90063376 - MTC LTR MaLR -330 91 1 7 1061 228 137 0 0 chr5 62473977 62474028 -90063231 + (T)n Simple_repeat Simple_repeat 1 51 0 7 1061 340 331 102 19 chr5 62474128 62474451 -90062808 + Lx8 LINE L1 6088 6437 -1036 7 1061 3304 148 110 5 chr5 62474687 62475289 -90061970 - Lx2A1 LINE L1 -2 7006 6342 7 1061 6450 162 62 9 chr5 62475291 62475368 -90061891 + Lx LINE L1 4586 4662 -1221 7 1061 270 0 0 0 chr5 62475368 62475398 -90061861 + (CAA)n Simple_repeat Simple_repeat 1 30 0 7 1061 6734 141 39 9 chr5 62475398 62477313 -90059946 + Lx LINE L1 4663 6650 -4 7 1061 1295 191 4 29 chr5 62477338 62477580 -90059679 - Lx2A1 LINE L1 -660 6348 6113 7 1061 435 78 0 0 chr5 62478341 62478405 -90058854 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1061 503 105 13 0 chr5 62478451 62478527 -90058732 + Lx2A1 LINE L1 6113 6189 -819 7 1061 378 0 0 0 chr5 62478748 62478790 -90058469 + (TA)n Simple_repeat Simple_repeat 1 42 0 7 1061 22 0 0 0 chr5 62479607 62479629 -90057630 + AT_rich Low_complexity Low_complexity 1 22 0 7 1061 444 37 0 0 chr5 62481137 62481191 -90056068 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1061 27 49 0 0 chr5 62481310 62481351 -90055908 + AT_rich Low_complexity Low_complexity 1 41 0 7 1061 345 74 35 53 chr5 62481801 62481915 -90055344 + T-rich Low_complexity Low_complexity 3 114 0 7 1061 21 0 0 0 chr5 62482143 62482164 -90055095 + AT_rich Low_complexity Low_complexity 1 21 0 7 1061 234 0 0 0 chr5 62482900 62482926 -90054333 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1061 66 43 0 0 chr5 62484616 62484710 -90052549 + AT_rich Low_complexity Low_complexity 1 94 0 7 1061 341 274 117 44 chr5 62485230 62485436 -90051823 + RMER20B LTR ERVK 179 399 -228 7 1061 404 344 44 86 chr5 62487490 62487805 -90049454 - MLT1D LTR MaLR -178 327 26 7 1061 207 69 0 0 chr5 62489023 62489052 -90048207 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1061 1163 68 0 0 chr5 62489052 62489200 -90048059 - B1_Mus1 SINE Alu 0 148 1 7 1061 808 288 45 5 chr5 62489263 62489486 -90047773 + MTD LTR MaLR 155 386 -33 7 1061 32 0 0 0 chr5 62489519 62489551 -90047708 + AT_rich Low_complexity Low_complexity 1 32 0 7 1061 4789 149 59 32 chr5 62490589 62491519 -90045740 + Lx2B LINE L1 6043 6997 -3 7 1061 400 341 133 56 chr5 62491977 62492337 -90044922 + MT2A LTR ERVL 138 525 -8 7 1061 180 77 0 0 chr5 62492926 62492952 -90044307 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 1061 203 32 0 61 chr5 62493180 62493213 -90044046 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 7 1061 637 338 56 13 chr5 62493369 62493672 -90043587 + MER54B LTR ERVL 11 326 -467 7 1061 41 36 0 0 chr5 62493710 62493765 -90043494 + AT_rich Low_complexity Low_complexity 1 55 0 7 1061 26 0 0 0 chr5 62494147 62494173 -90043086 + AT_rich Low_complexity Low_complexity 1 26 0 7 1061 5213 60 0 1 chr5 62494415 62495078 -90042181 - L1_Mus1 LINE L1 -2 6565 5904 7 1061 2226 61 45 0 chr5 62495078 62495400 -90041859 + L1_Mus1 LINE L1 5553 5887 -680 7 1061 243 300 203 9 chr5 62496379 62496591 -90040668 - L1M1 LINE L1 -649 5654 5402 7 1061 406 145 76 61 chr5 62496912 62497044 -90040215 - Lx9 LINE L1 0 7644 7511 7 1061 9593 25 1 1 chr5 62497017 62498838 -90038421 - L1Md_T LINE L1 0 6582 4762 7 1061 21 82 0 0 chr5 62498853 62498902 -90038357 + AT_rich Low_complexity Low_complexity 1 49 0 7 1061 798 146 0 55 chr5 62499015 62499160 -90038099 - B1_Mus1 SINE Alu -10 138 2 7 1061 441 110 0 0 chr5 62499160 62499233 -90038026 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 1061 1745 204 17 8 chr5 62499246 62499597 -90037662 - MTC LTR MaLR 0 421 68 7 1061 1045 132 0 16 chr5 62499611 62499907 -90037352 - Lx3A LINE L1 -6 6975 6622 7 1061 379 182 22 11 chr5 62499904 62499993 -90037266 - L1_Mur3 LINE L1 -1201 4679 4590 7 1061 488 152 0 0 chr5 62500059 62500138 -90037121 - MTC LTR MaLR -341 80 2 1 1061 265 260 115 0 chr5 62500185 62500281 -90036978 + L1M2 LINE L1 5666 5772 -540 2 1061 508 200 8 8 chr5 62500281 62500407 -90036852 + GA-rich Low_complexity Low_complexity 1 126 0 3 1061 1024 245 82 71 chr5 62500487 62500939 -90036320 - RLTR40 LTR ERVK -340 477 21 4 1061 31 58 0 0 chr5 62501041 62501093 -90036166 + AT_rich Low_complexity Low_complexity 1 52 0 5 1061 22 56 0 0 chr5 62501400 62501436 -90035823 + AT_rich Low_complexity Low_complexity 1 36 0 6 1061 339 113 0 0 chr5 62501484 62501537 -90035722 + Lx3A LINE L1 6622 6674 -307 7 1061 466 331 0 0 chr5 62501975 62502114 -90035145 + B3A SINE B2 13 151 -47 8 1061 423 0 0 0 chr5 62502126 62502173 -90035086 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1061 21 0 0 0 chr5 62502175 62502196 -90035063 + AT_rich Low_complexity Low_complexity 1 21 0 1 1061 338 315 84 60 chr5 62503604 62503893 -90033366 + MLT1D LTR MaLR 88 388 -117 1 1061 779 112 0 7 chr5 62503959 62504094 -90033165 + (GA)n Simple_repeat Simple_repeat 2 135 0 1 1061 664 272 81 31 chr5 62504142 62504465 -90032794 - RLTR15 LTR ERVK -16 343 5 1 1061 186 43 0 0 chr5 62504478 62504501 -90032758 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1061 216 67 0 0 chr5 62505702 62505732 -90031527 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1061 227 346 50 57 chr5 62505902 62506043 -90031216 - MLT1E2 LTR MaLR -25 602 463 1 1061 2786 90 5 8 chr5 62506058 62506448 -90030811 + L1_Mus2 LINE L1 6178 6566 0 1 1061 186 267 22 0 chr5 62506830 62506875 -90030384 + L4 LINE RTE 923 968 -1061 1 1061 193 361 0 16 chr5 62506858 62506920 -90030339 + MIRb SINE MIR 208 268 0 1 1061 21 0 0 0 chr5 62507645 62507666 -90029593 + AT_rich Low_complexity Low_complexity 1 21 0 2 1061 885 10 0 0 chr5 62507990 62508092 -90029167 + (GAA)n Simple_repeat Simple_repeat 2 103 0 2 1061 7147 98 37 1 chr5 62508476 62509554 -90027705 + MusHAL1 LINE L1 948 2064 -648 2 1061 342 98 0 0 chr5 62510128 62510179 -90027080 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1061 1908 203 107 27 chr5 62511202 62511693 -90025566 - RMER4B LTR ERVK -2 583 54 2 1061 2907 176 68 2 chr5 62511693 62512255 -90025004 - MT2B LTR ERVL -2 599 1 2 1061 1908 213 40 26 chr5 62512255 62512306 -90024953 - RMER4B LTR ERVK -532 53 1 2 1061 320 369 22 62 chr5 62512712 62513052 -90024207 + L1MDa LINE L1 448 851 -5782 2 1061 278 26 0 25 chr5 62513193 62513233 -90024026 + (TAA)n Simple_repeat Simple_repeat 1 39 0 2 1061 229 235 81 32 chr5 62513325 62513448 -90023811 + L1MD LINE L1 5594 5722 -637 2 1061 539 234 40 0 chr5 62513467 62513591 -90023668 - B1_Mus1 SINE Alu -17 131 3 2 1061 606 294 46 88 chr5 62514323 62514825 -90022434 - RLTR12B LTR ERVK -32 495 47 3 1061 24 0 0 0 chr5 62515475 62515499 -90021760 + AT_rich Low_complexity Low_complexity 1 24 0 3 1061 22811 124 84 13 chr5 62516135 62518458 -90018801 + Lx3_Mus LINE L1 208 2878 -3008 3 1061 501 17 0 0 chr5 62518458 62518516 -90018743 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1061 22811 102 59 16 chr5 62518516 62520088 -90017171 + Lx3_Mus LINE L1 2879 4637 -1249 3 1061 189 0 0 0 chr5 62520088 62520109 -90017150 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1061 22811 102 59 16 chr5 62520109 62520513 -90016746 + Lx3_Mus LINE L1 4638 5042 -844 3 1061 921 113 12 1 chr5 62520527 62520700 -90016559 + Lx3_Mus LINE L1 5194 5398 -488 3 1061 3349 122 74 23 chr5 62520701 62521119 -90016140 + Lx3_Mus LINE L1 5837 6279 -730 3 1061 1653 26 0 0 chr5 62521119 62521310 -90015949 - B2_Mm1t SINE B2 -1 192 2 3 132 3349 122 74 23 chr5 62521310 62521497 -90015762 + Lx3_Mus LINE L1 6280 6473 -536 3 1062 460 300 38 53 chr5 62521509 62521773 -90015486 - RLTR15 LTR ERVK -62 297 38 3 1062 1486 275 74 44 chr5 62521817 62523038 -90014221 - RMER1A Other Other -136 930 1 3 1062 1472 216 82 12 chr5 62523022 62523364 -90013895 - RMER1B Other Other -651 415 50 3 1062 259 240 62 10 chr5 62523795 62523892 -90013367 - Lx9 LINE L1 -10 7634 7533 3 1062 441 36 0 0 chr5 62523904 62523959 -90013300 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1062 5335 60 0 3 chr5 62524265 62524946 -90012313 + L1Md_F2 LINE L1 5904 6582 0 4 1062 1926 246 15 13 chr5 62525044 62525501 -90011758 + Lx2B LINE L1 6532 6989 -11 4 1062 237 250 24 87 chr5 62525482 62525609 -90011650 + Lx7 LINE L1 5266 5384 -496 4 1062 1039 225 82 10 chr5 62525614 62525906 -90011353 + Lx7 LINE L1 5589 5901 -1795 4 1062 212 267 0 0 chr5 62526219 62526264 -90010995 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 4 1062 243 271 20 50 chr5 62526264 62526365 -90010894 + Lx8 LINE L1 6164 6261 -1212 4 1062 7419 92 4 0 chr5 62526375 62527405 -90009854 - L1_Mus2 LINE L1 -672 5211 4178 4 1062 7230 94 10 2 chr5 62527403 62528725 -90008534 + L1_Mus2 LINE L1 5234 6564 -2 4 1062 1034 341 81 21 chr5 62528808 62529523 -90007736 + Lx8 LINE L1 6371 7128 -345 4 1062 575 91 18 0 chr5 62529599 62529709 -90007550 - L1Md_F2 LINE L1 0 6582 6471 4 1062 253 331 39 62 chr5 62529723 62529772 -90007487 + Lx8 LINE L1 7182 7226 -247 4 1062 2712 93 27 3 chr5 62529772 62530148 -90007111 - IAPEY_LTR LTR ERVK 0 385 1 4 1062 253 331 39 62 chr5 62530148 62530227 -90007032 + Lx8 LINE L1 7227 7307 -166 4 1062 1442 171 36 0 chr5 62530256 62530536 -90006723 + Lx LINE L1 6362 6651 -3 4 1062 8388 139 5 42 chr5 62530556 62532127 -90005132 + Lx2A LINE L1 5446 6968 -40 5 1062 441 85 0 47 chr5 62532130 62532216 -90005043 + Lx2A LINE L1 6927 7008 0 5 1062 801 0 0 0 chr5 62532216 62532305 -90004954 + (GAGAA)n Simple_repeat Simple_repeat 2 90 0 5 1062 28 0 0 0 chr5 62533418 62533446 -90003813 + AT_rich Low_complexity Low_complexity 1 28 0 5 1062 351 257 57 57 chr5 62533762 62533939 -90003320 - Lx9 LINE L1 0 7644 7468 5 1062 191 36 36 0 chr5 62534746 62534774 -90002485 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 5 1062 231 36 0 0 chr5 62535070 62535098 -90002161 + (TGG)n Simple_repeat Simple_repeat 1 28 0 5 1062 1163 54 0 20 chr5 62535098 62535238 -90002021 - B1_Mus2 SINE Alu -7 140 1 5 1062 757 378 42 19 chr5 62535567 62535944 -90001315 + MTD LTR MaLR 20 405 -14 5 1062 194 33 67 0 chr5 62536855 62536885 -90000374 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 5 1062 24 32 0 0 chr5 62537035 62537066 -90000193 + AT_rich Low_complexity Low_complexity 1 31 0 6 1062 2921 248 30 14 chr5 62537629 62538536 -89998723 - L1_Mur3 LINE L1 -678 5202 4282 6 1062 34 84 0 0 chr5 62538557 62538640 -89998619 + AT_rich Low_complexity Low_complexity 1 83 0 6 1062 683 327 34 26 chr5 62538705 62538972 -89998287 - MTEa-int LTR MaLR -1311 269 1 6 1062 349 325 105 0 chr5 62538972 62539086 -89998173 - MTEa LTR MaLR -2 377 252 6 1062 779 276 24 10 chr5 62540405 62540610 -89996649 - B3 SINE B2 0 216 9 6 1062 447 352 56 6 chr5 62540869 62541049 -89996210 + MER20 DNA MER1_type 31 219 0 6 1062 546 239 15 22 chr5 62541587 62541724 -89995535 + MT2A LTR ERVL 327 462 -71 6 1062 791 119 23 0 chr5 62541726 62541953 -89995306 + (TAGA)n Simple_repeat Simple_repeat 1 232 0 6 1062 279 77 0 0 chr5 62542114 62542153 -89995106 - Lx6 LINE L1 -1835 5625 5587 6 1062 256 171 158 0 chr5 62542135 62542165 -89995094 - L1_Mur1 LINE L1 -239 5647 5606 6 1062 3141 55 31 2 chr5 62542165 62542580 -89994679 - L1_Mus1 LINE L1 -1 6566 6140 7 1062 256 171 158 0 chr5 62542580 62542625 -89994634 - L1_Mur1 LINE L1 -281 5605 5561 6 1062 6398 189 19 9 chr5 62542630 62543870 -89993389 + Lx3C LINE L1 5721 6973 -3 7 1062 32 0 0 0 chr5 62544064 62544096 -89993163 + AT_rich Low_complexity Low_complexity 1 32 0 7 1062 23 0 0 0 chr5 62544204 62544227 -89993032 + AT_rich Low_complexity Low_complexity 1 23 0 7 1062 8901 108 13 46 chr5 62544625 62546088 -89991171 - Lx3A LINE L1 -2 6979 5588 7 1062 22 35 0 0 chr5 62546760 62546789 -89990470 + AT_rich Low_complexity Low_complexity 1 29 0 7 1062 717 323 27 121 chr5 62546804 62547216 -89990043 - MTE2a LTR MaLR -6 373 1 7 1062 378 336 65 27 chr5 62547949 62548255 -89989004 - RMER13A LTR ERVK -83 777 514 7 1062 575 160 63 56 chr5 62548272 62548398 -89988861 - RMER6D LTR ERVK -593 127 1 7 1062 397 34 17 17 chr5 62548632 62548692 -89988567 + (TA)n Simple_repeat Simple_repeat 1 60 0 7 1062 629 302 56 19 chr5 62548692 62548899 -89988360 + Lx9 LINE L1 6342 6557 -1087 8 1062 1595 281 23 12 chr5 62548918 62549404 -89987855 + Lx9 LINE L1 6697 7187 -457 8 1062 226 203 95 0 chr5 62549611 62549685 -89987574 + Lx9 LINE L1 7555 7635 -9 8 1062 799 303 56 46 chr5 62550512 62550796 -89986463 + B4A SINE B4 6 292 0 8 1062 557 189 0 37 chr5 62550822 62551009 -89986250 + GA-rich Low_complexity Low_complexity 1 180 0 8 1062 1005 334 83 57 chr5 62552382 62552832 -89984427 - Lx8 LINE L1 -823 6650 6179 8 1062 405 0 0 0 chr5 62552832 62552877 -89984382 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1062 1005 316 68 66 chr5 62552877 62553405 -89983854 - Lx8 LINE L1 -1295 6178 5691 8 1062 230 269 71 63 chr5 62554027 62554154 -89983105 - Helitron3Na_Mam RC Helitron -357 129 2 8 1062 24 53 0 0 chr5 62554279 62554317 -89982942 + AT_rich Low_complexity Low_complexity 1 38 0 8 1062 245 214 0 54 chr5 62554489 62554563 -89982696 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 8 1062 260 296 28 75 chr5 62554581 62554687 -89982572 - Lx8 LINE L1 -155 7318 7218 8 1062 391 295 118 18 chr5 62555150 62555378 -89981881 - L1MA9 LINE L1 -77 6235 5985 8 1062 3542 219 65 3 chr5 62555598 62556341 -89980918 - Lx5 LINE L1 -3 7047 6259 9 1062 713 209 31 25 chr5 62556335 62556497 -89980762 + Lx5 LINE L1 6126 6288 -762 9 1062 198 0 0 0 chr5 62556688 62556710 -89980549 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1062 295 251 16 19 chr5 62556749 62556873 -89980386 + L1_Mur3 LINE L1 4520 4642 -1235 9 1062 23 54 0 0 chr5 62556887 62556924 -89980335 + AT_rich Low_complexity Low_complexity 1 37 0 9 1062 315 71 0 0 chr5 62557086 62557128 -89980131 + (TATG)n Simple_repeat Simple_repeat 3 44 0 9 1062 731 186 43 12 chr5 62557132 62557295 -89979964 - Lx4B LINE L1 -17 7041 6874 9 1062 896 151 55 30 chr5 62557296 62557460 -89979799 + Lx4B LINE L1 6570 6737 -321 9 1062 235 274 9 47 chr5 62557665 62557772 -89979487 - L1_Rod LINE L1 -617 5230 5128 9 1062 1234 266 63 57 chr5 62557877 62558447 -89978812 + Lx7 LINE L1 7078 7654 -42 9 1062 1022 203 101 89 chr5 62558447 62558621 -89978638 - RMER17C LTR ERVK 0 410 219 9 1062 590 60 12 0 chr5 62558621 62558704 -89978555 + (GGGAA)n Simple_repeat Simple_repeat 5 88 0 9 1062 1125 78 0 0 chr5 62558704 62558857 -89978402 + (GGAGA)n Simple_repeat Simple_repeat 1 153 0 1 1062 1299 79 0 0 chr5 62558860 62559037 -89978222 + (GAGAA)n Simple_repeat Simple_repeat 3 179 0 1 1062 1022 203 101 89 chr5 62559037 62559262 -89977997 - RMER17C LTR ERVK -192 218 2 9 1062 1234 266 63 57 chr5 62559262 62559306 -89977953 + Lx7 LINE L1 7655 7693 -3 9 1062 353 333 10 0 chr5 62559330 62559429 -89977830 + RSINE1 SINE B4 6 105 -60 1 1062 4254 78 0 0 chr5 62559429 62559977 -89977282 - L1Md_F2 LINE L1 -417 6165 5618 1 1062 2781 105 0 31 chr5 62559977 62560444 -89976815 + L1Md_F2 LINE L1 6156 6582 0 1 1062 3221 174 104 80 chr5 62560524 62560558 -89976701 - RMER19B LTR ERVK -162 740 706 1 1062 183 80 0 0 chr5 62560558 62560583 -89976676 + (CAG)n Simple_repeat Simple_repeat 1 25 0 1 1062 3221 174 104 80 chr5 62560583 62561271 -89975988 - RMER19B LTR ERVK -197 705 3 1 1062 450 0 0 0 chr5 62561285 62561335 -89975924 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1062 1088 36 0 49 chr5 62561359 62561503 -89975756 - L1Md_F2 LINE L1 -306 6276 6140 1 1062 2389 49 3 3 chr5 62561503 62561808 -89975451 + L1Md_F2 LINE L1 6264 6568 -14 1 1062 443 274 14 14 chr5 62562048 62562196 -89975063 + L1_Rod LINE L1 5688 5835 -12 1 1062 21 36 0 0 chr5 62562498 62562526 -89974733 + AT_rich Low_complexity Low_complexity 1 28 0 1 1062 22 0 0 0 chr5 62563798 62563820 -89973439 + AT_rich Low_complexity Low_complexity 1 22 0 1 1062 255 61 0 0 chr5 62563842 62563875 -89973384 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1062 28 71 0 0 chr5 62564015 62564071 -89973188 + AT_rich Low_complexity Low_complexity 1 56 0 1 1062 6463 138 14 14 chr5 62564687 62565747 -89971512 - Lx LINE L1 -8 6646 5587 1 1062 11646 127 25 5 chr5 62565749 62565769 -89971490 + L1_Mur1 LINE L1 3823 3842 -2044 1 1062 702 97 0 0 chr5 62565769 62565882 -89971377 + (CA)n Simple_repeat Simple_repeat 2 114 0 1 1062 11646 127 25 5 chr5 62565882 62567288 -89969971 + L1_Mur1 LINE L1 3843 5281 -605 1 1062 234 0 0 0 chr5 62567288 62567314 -89969945 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1062 11646 127 25 5 chr5 62567314 62567766 -89969493 + L1_Mur1 LINE L1 5282 5737 -149 1 1062 4351 180 22 4 chr5 62567789 62568621 -89968638 + L1_Mm LINE L1 4686 5532 -351 1 1062 320 350 47 41 chr5 62568647 62568817 -89968442 - Lx8 LINE L1 -164 7309 7139 1 1062 2775 151 0 7 chr5 62568933 62569385 -89967874 + Lx LINE L1 6199 6647 -7 1 1062 1706 57 0 9 chr5 62569525 62569755 -89967504 + L1Md_F2 LINE L1 6354 6581 -1 1 1062 189 147 0 0 chr5 62569763 62569797 -89967462 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1062 1773 79 25 25 chr5 62570773 62571047 -89966212 + L1_Mus3 LINE L1 6364 6637 -1 1 1062 2318 160 2 8 chr5 62572188 62572584 -89964675 - Lx2B LINE L1 -1 6999 6606 1 1062 729 0 0 0 chr5 62572610 62572691 -89964568 + (GAA)n Simple_repeat Simple_repeat 1 81 0 1 1062 189 121 0 0 chr5 62572962 62572995 -89964264 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1 1062 297 0 0 0 chr5 62573071 62573104 -89964155 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1062 22 56 0 0 chr5 62574226 62574262 -89962997 + AT_rich Low_complexity Low_complexity 1 36 0 1 1062 24 0 0 0 chr5 62574443 62574467 -89962792 + AT_rich Low_complexity Low_complexity 1 24 0 1 1062 525 76 0 0 chr5 62574815 62574894 -89962365 + (TC)n Simple_repeat Simple_repeat 1 79 0 1 1062 6719 140 47 9 chr5 62574907 62576046 -89961213 - Lx2 LINE L1 -1 6996 5815 1 1062 21 0 0 0 chr5 62576320 62576341 -89960918 + AT_rich Low_complexity Low_complexity 1 21 0 1 1062 242 323 0 16 chr5 62576450 62576513 -89960746 + PB1D10 SINE Alu 46 107 -10 1 1062 225 262 106 12 chr5 62576453 62576538 -89960721 + ID_B1 SINE B4 130 222 -2 1 1062 840 98 97 15 chr5 62577069 62577203 -89960056 + B1_Mm SINE Alu 1 145 -2 1 1062 242 73 0 24 chr5 62577219 62577261 -89959998 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1062 493 307 28 88 chr5 62577264 62577446 -89959813 + B3A SINE B2 2 172 -26 1 1062 484 244 104 70 chr5 62578840 62579127 -89958132 - Lx9 LINE L1 -19 7625 7329 1 1062 669 300 107 38 chr5 62579127 62579418 -89957841 + Lx9 LINE L1 6854 7164 -480 1 1062 236 316 12 12 chr5 62579535 62579615 -89957644 - MLT1C LTR MaLR -6 461 382 1 1062 353 288 94 43 chr5 62579755 62579893 -89957366 - MLT1C LTR MaLR -312 155 11 1 1062 211 189 18 36 chr5 62580332 62580387 -89956872 - L2 LINE L2 -1091 2328 2275 1 1062 711 282 61 0 chr5 62580588 62580806 -89956453 - ORR1D1 LTR MaLR -139 239 1 1 1062 2125 252 88 13 chr5 62580806 62581420 -89955839 - ORR1D1-int LTR MaLR 0 1370 711 1 1062 630 220 14 0 chr5 62581420 62581561 -89955698 - ORR1D1 LTR MaLR -231 143 1 1 1062 441 0 0 0 chr5 62582337 62582386 -89954873 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1062 498 330 45 71 chr5 62582451 62582787 -89954472 + MTEb LTR MaLR 51 377 -2 1 1062 3158 42 0 0 chr5 62587147 62587531 -89949728 + L1Md_T LINE L1 6199 6582 0 1 1062 297 68 0 0 chr5 62588008 62588052 -89949207 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1062 599 107 10 88 chr5 62588067 62588261 -89948998 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 1 1062 318 50 0 0 chr5 62588329 62588369 -89948890 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1062 324 94 0 0 chr5 62588587 62588640 -89948619 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1062 560 351 36 5 chr5 62588823 62589015 -89948244 + B3 SINE B2 6 203 -13 1 1062 38 0 0 0 chr5 62589051 62589089 -89948170 + AT_rich Low_complexity Low_complexity 1 38 0 1 1062 291 93 0 0 chr5 62589202 62589245 -89948014 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1062 635 248 8 0 chr5 62590331 62590464 -89946795 - B1_Mur2 SINE Alu -6 143 10 1 1062 258 324 206 33 chr5 62591106 62591320 -89945939 + L2c LINE L2 3116 3366 -21 1 1062 234 291 236 43 chr5 62591608 62591748 -89945511 + MLT2C2 LTR ERVL 23 189 -275 1 1062 304 312 65 0 chr5 62591994 62592087 -89945172 + B1F1 SINE Alu 9 107 -42 1 1062 1856 152 3 6 chr5 62592105 62592430 -89944829 - Lx LINE L1 0 6654 6331 1 1062 1365 143 5 0 chr5 62592429 62592639 -89944620 - Lx LINE L1 -490 6164 5954 1 1062 2645 75 67 8 chr5 62592650 62593025 -89944234 + MTB LTR MaLR 1 397 -3 1 1062 35 0 0 0 chr5 62593330 62593365 -89943894 + AT_rich Low_complexity Low_complexity 1 35 0 1 1062 374 344 66 76 chr5 62593945 62594338 -89942921 - Lx9 LINE L1 -171 7473 7078 1 1062 272 192 9 28 chr5 62594355 62594462 -89942797 + (TA)n Simple_repeat Simple_repeat 2 106 0 1 1062 1201 281 136 29 chr5 62594466 62594804 -89942455 + Lx9 LINE L1 6336 6852 -792 1 1062 4189 42 2 10 chr5 62594804 62595311 -89941948 - RLTR1C LTR ERV1 0 503 1 1 1062 1201 277 138 27 chr5 62595311 62595459 -89941800 + Lx9 LINE L1 6707 6990 -654 1 1062 227 104 21 0 chr5 62595466 62595514 -89941745 + (TTTTTG)n Simple_repeat Simple_repeat 4 52 0 1 1062 28 29 0 0 chr5 62595898 62595933 -89941326 + AT_rich Low_complexity Low_complexity 1 35 0 1 1062 3859 95 25 14 chr5 62596104 62596660 -89940599 + L1_Mus3 LINE L1 6074 6635 -3 1 1062 184 122 20 39 chr5 62597359 62597410 -89939849 + (TTG)n Simple_repeat Simple_repeat 2 51 0 1 1062 227 395 139 18 chr5 62598744 62598909 -89938350 - MLT1E1A LTR MaLR -493 187 3 1 1062 180 327 91 55 chr5 62598926 62599091 -89938168 + MIRb SINE MIR 16 186 -82 1 1062 343 266 0 0 chr5 62599962 62600041 -89937218 - ID4_ SINE ID -3 80 2 1 1062 35367 35 0 1 chr5 62600535 62605942 -89931317 + L1Md_F2 LINE L1 86 5589 -297 1 1062 8955 6 0 0 chr5 62605942 62606938 -89930321 + L1Md_T LINE L1 5587 6582 0 1 1062 4160 86 10 10 chr5 62606937 62607534 -89929725 + L1_Mus2 LINE L1 5956 6552 -14 1 1062 35367 98 0 9158 chr5 62607534 62607642 -89929617 + L1Md_F2 LINE L1 5590 5594 -292 1 1062 345 186 0 0 chr5 62607852 62607922 -89929337 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1062 22 0 0 0 chr5 62608799 62608821 -89928438 + AT_rich Low_complexity Low_complexity 1 22 0 1 1062 894 280 307 13 chr5 62609629 62609932 -89927327 - MTD LTR MaLR -8 411 20 1 1062 1512 292 99 106 chr5 62609975 62610813 -89926446 - MTD-int LTR MaLR -2 1256 425 1 1062 35791 51 1 3 chr5 62610830 62617488 -89919771 - L1Md_T LINE L1 0 6585 1 1 1062 1332 249 66 25 chr5 62617488 62617854 -89919405 - MTD-int LTR MaLR -865 393 13 1 1062 1354 308 27 27 chr5 62617854 62618265 -89918994 - MTD LTR MaLR -8 411 1 1 1062 2563 214 84 16 chr5 62618316 62618961 -89918298 + RLTR40 LTR ERVK 26 714 -103 1 1062 33783 34 1 0 chr5 62618961 62624803 -89912456 + L1Md_T LINE L1 1 5589 -297 1 1062 9027 5 0 0 chr5 62624803 62625799 -89911460 + L1Md_T LINE L1 5590 6585 0 1 1062 613 246 0 8 chr5 62625805 62625932 -89911327 + RLTR40 LTR ERVK 685 810 -7 1 1062 258 32 0 0 chr5 62626594 62626625 -89910634 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1062 1098 177 82 0 chr5 62626692 62626912 -89910347 + Lx3C LINE L1 6261 6498 -478 1 1062 432 239 94 7 chr5 62626944 62627101 -89910158 + Lx3C LINE L1 6815 6996 -4 1 1062 2537 176 16 14 chr5 62628565 62629054 -89908205 + Lx4B LINE L1 6358 6847 -211 1 1062 270 418 115 16 chr5 62630589 62630893 -89906366 - LTR33 LTR ERVL -50 465 132 1 1062 252 86 0 0 chr5 62631888 62631923 -89905336 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1062 34768 30 3 7 chr5 62631994 62636980 -89900279 + L1Md_T LINE L1 631 5586 -297 1 1062 8377 37 1 0 chr5 62636980 62637975 -89899284 + L1Md_T LINE L1 5587 6582 0 1 1062 380 374 37 25 chr5 62638015 62638259 -89899000 + MLT1C LTR MaLR 171 417 -50 1 1062 844 306 96 46 chr5 62638364 62638841 -89898418 + Lx8 LINE L1 6372 6872 -601 1 1062 373 52 25 38 chr5 62638861 62638941 -89898318 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 1 1062 671 312 68 26 chr5 62638982 62639321 -89897938 + Lx8 LINE L1 6923 7275 -198 1 1062 485 32 16 0 chr5 62640505 62640568 -89896691 + (GGA)n Simple_repeat Simple_repeat 3 66 0 1 1062 31 88 0 0 chr5 62640874 62640954 -89896305 + AT_rich Low_complexity Low_complexity 1 80 0 1 1062 336 24 0 0 chr5 62641837 62641878 -89895381 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1062 747 364 67 26 chr5 62642401 62642821 -89894438 - MER70A LTR ERVL -4 468 32 1 1062 191 400 0 0 chr5 62643624 62643704 -89893555 - MIR SINE MIR -107 155 76 1 1062 24 32 0 0 chr5 62644594 62644625 -89892634 + AT_rich Low_complexity Low_complexity 1 31 0 1 1062 28 29 0 0 chr5 62645267 62645302 -89891957 + AT_rich Low_complexity Low_complexity 1 35 0 1 1062 1699 198 61 37 chr5 62645472 62645849 -89891410 + ORR1B1 LTR MaLR 6 391 -3 1 1062 9540 87 8 75 chr5 62645849 62648085 -89889174 - Lx5 LINE L1 -1076 5974 4103 1 1062 2538 13 0 0 chr5 62648084 62648384 -89888875 + L1Md_T LINE L1 5287 5586 -297 1 1062 8278 42 0 0 chr5 62648384 62649380 -89887879 + L1Md_T LINE L1 5587 6582 0 1 1062 988 134 0 28 chr5 62649380 62649557 -89887702 + Lx4B LINE L1 6614 6785 -273 1 1062 238 261 76 67 chr5 62649566 62649685 -89887574 + RLTR12B LTR ERVK 149 268 -260 1 1062 403 304 30 42 chr5 62649730 62649898 -89887361 + RLTR17 LTR ERVK 282 447 -245 2 1062 1060 228 58 7 chr5 62650107 62650381 -89886878 + Lx5 LINE L1 6763 7050 0 2 1062 306 67 0 0 chr5 62650430 62650475 -89886784 + (A)n Simple_repeat Simple_repeat 1 45 0 2 1062 210 191 0 41 chr5 62650721 62650770 -89886489 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1062 655 104 9 9 chr5 62652087 62652203 -89885056 + (GA)n Simple_repeat Simple_repeat 2 117 0 2 1063 888 98 0 0 chr5 62652482 62652605 -89884654 + B1_Mm SINE Alu 25 147 0 2 1063 180 0 0 0 chr5 62652606 62652626 -89884633 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1063 26 0 0 0 chr5 62652681 62652707 -89884552 + AT_rich Low_complexity Low_complexity 1 26 0 2 1063 4497 129 10 17 chr5 62654468 62655169 -89882090 + Lx2 LINE L1 6291 6986 -11 2 1063 528 146 0 0 chr5 62655169 62655258 -89882001 + (TA)n Simple_repeat Simple_repeat 2 90 0 2 1063 260 258 23 53 chr5 62655418 62655549 -89881710 - Lx7 LINE L1 -1 7695 7569 2 1063 770 287 4 52 chr5 62655581 62655831 -89881428 + Lx6 LINE L1 6954 7191 -269 2 1063 975 47 109 0 chr5 62655844 62655972 -89881287 - B1_Mus1 SINE Alu -4 144 3 2 1063 306 315 117 49 chr5 62655997 62656244 -89881015 + MLT1B LTR MaLR 117 380 -10 2 1063 375 357 91 25 chr5 62656470 62656711 -89880548 + MER74C LTR ERVL 4 260 -200 2 1063 227 284 23 69 chr5 62656759 62656846 -89880413 + RSINE1 SINE B4 83 165 0 2 1063 246 381 9 26 chr5 62656848 62656964 -89880295 + RMER1B Other Other 27 140 -926 2 1063 446 0 19 0 chr5 62656967 62657021 -89880238 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1063 2962 69 0 0 chr5 62657021 62657398 -89879861 + MTB LTR MaLR 8 384 -16 2 1063 610 88 10 19 chr5 62657445 62657549 -89879710 + (TATG)n Simple_repeat Simple_repeat 2 104 0 2 1063 270 268 228 0 chr5 62658112 62658239 -89879020 + Tigger1 DNA MER2_type 112 267 -2151 2 1063 546 57 0 0 chr5 62658243 62658313 -89878946 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 2 1063 2114 292 145 57 chr5 62658343 62659458 -89877801 + Tigger1 DNA MER2_type 337 1558 -860 2 1063 195 42 0 0 chr5 62659458 62659482 -89877777 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1063 2114 292 145 57 chr5 62659482 62659578 -89877681 + Tigger1 DNA MER2_type 1559 1654 -764 2 1063 1297 274 73 13 chr5 62659690 62660075 -89877184 + MTC LTR MaLR 10 417 -4 2 1063 241 273 0 0 chr5 62660122 62660177 -89877082 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 2 1063 379 315 107 24 chr5 62660235 62660404 -89876855 - B4 SINE B4 -83 209 27 2 1063 649 309 91 14 chr5 62660511 62660862 -89876397 + Tigger1 DNA MER2_type 1914 2291 -127 2 1063 396 0 0 0 chr5 62661188 62661232 -89876027 + (A)n Simple_repeat Simple_repeat 1 44 0 2 1063 5049 161 26 32 chr5 62661542 62662487 -89874772 - Lx4A LINE L1 -4 7054 6115 2 1063 1400 124 81 78 chr5 62662487 62662616 -89874643 + Lx4A LINE L1 5813 5955 -1103 2 1063 338 0 0 23 chr5 62662616 62662659 -89874600 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2 1063 1400 124 81 78 chr5 62662659 62662861 -89874398 + Lx4A LINE L1 5956 6144 -914 2 1063 4413 14 2 0 chr5 62663021 62663513 -89873746 - MT2_Mm LTR ERVL 0 493 1 2 1063 302 0 0 0 chr5 62663513 62663551 -89873708 - MERVL-int LTR ERVL 0 5485 5448 2 1063 390 167 46 35 chr5 62663551 62663638 -89873621 - ORR1A3-int LTR MaLR -1323 640 553 2 1063 36880 20 9 0 chr5 62663638 62668211 -89869048 - MERVL-int LTR ERVL -125 5360 886 2 1063 6118 11 0 0 chr5 62668211 62668925 -89868334 - MERVL-int LTR ERVL -4771 714 1 2 1063 4413 14 2 0 chr5 62668925 62669417 -89867842 - MT2_Mm LTR ERVL 0 493 1 2 1063 479 321 50 19 chr5 62669816 62669975 -89867284 + B3A SINE B2 18 181 -17 2 1063 9161 113 15 17 chr5 62670209 62672054 -89865205 - L1_Mus2 LINE L1 0 6566 4734 2 1063 265 0 75 0 chr5 62672054 62672094 -89865165 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1063 9161 138 12 5 chr5 62672094 62672491 -89864768 - L1_Mus2 LINE L1 -1150 4733 4333 2 1063 22 0 0 0 chr5 62672866 62672888 -89864371 + AT_rich Low_complexity Low_complexity 1 22 0 2 1063 1507 129 0 0 chr5 62673047 62673279 -89863980 + L1VL2 LINE L1 66 297 -6038 2 1063 3422 146 104 7 chr5 62673300 62674018 -89863241 - L1_Mur2 LINE L1 -1056 4821 4034 2 1063 1042 276 134 8 chr5 62674019 62674391 -89862868 - MTD LTR MaLR 0 419 1 2 1063 363 94 0 0 chr5 62675121 62675174 -89862085 + L1Md_F LINE L1 238 290 -6326 2 1063 3552 79 14 21 chr5 62675188 62675757 -89861502 + L1Md_F LINE L1 1816 2380 -3503 2 1063 5312 76 23 10 chr5 62675761 62676297 -89860962 + L1Md_F2 LINE L1 5833 6371 -211 2 1063 459 0 0 0 chr5 62676297 62676348 -89860911 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1063 5312 76 23 10 chr5 62676348 62676539 -89860720 + L1Md_F2 LINE L1 6372 6569 -13 2 1063 356 68 0 33 chr5 62676578 62676639 -89860620 + (GGAGAA)n Simple_repeat Simple_repeat 3 61 0 2 1063 378 341 96 84 chr5 62676837 62677180 -89860079 - ORR1E LTR MaLR 0 359 13 2 1063 800 307 84 22 chr5 62679271 62679628 -89857631 - MTE2b LTR MaLR 0 379 1 2 1063 1078 301 3 61 chr5 62679878 62680257 -89857002 - BGLII_B LTR ERVK -3 438 82 2 1063 313 184 58 10 chr5 62680265 62680369 -89856890 + (TATAA)n Simple_repeat Simple_repeat 1 109 0 2 1063 3409 116 25 23 chr5 62680598 62681126 -89856133 - Lx LINE L1 0 6654 6126 2 1063 216 259 0 34 chr5 62681278 62681366 -89855893 + A-rich Low_complexity Low_complexity 3 87 0 2 1063 421 315 14 14 chr5 62681519 62681667 -89855592 - MTEa LTR MaLR -230 149 2 2 1063 471 253 161 21 chr5 62681742 62681928 -89855331 + Lx9 LINE L1 7245 7456 -188 2 1063 408 20 0 0 chr5 62681935 62681984 -89855275 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1063 505 211 116 160 chr5 62682010 62682304 -89854955 - RCHARR1 DNA MER1_type -464 510 230 2 1063 631 292 29 10 chr5 62682547 62682751 -89854508 - RMER5 LTR ERV1 0 534 327 2 1063 1346 203 4 30 chr5 62683009 62683273 -89853986 + Lx3C LINE L1 6712 6968 -8 2 1063 23 0 0 0 chr5 62683536 62683559 -89853700 + AT_rich Low_complexity Low_complexity 1 23 0 2 1063 315 0 0 0 chr5 62683571 62683606 -89853653 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1063 1074 87 0 0 chr5 62683950 62684099 -89853160 + Lx3_Mus LINE L1 6607 6755 -254 2 1063 1068 175 167 47 chr5 62684099 62684464 -89852795 + RLTR9E LTR ERVK 1 409 0 2 1063 3957 191 37 88 chr5 62684465 62685691 -89851568 + MMETn-int LTR ERVK 1 1163 -3681 2 1063 502 283 6 39 chr5 62685704 62685884 -89851375 + ETnERV2-int LTR ERVK 2435 2608 -4798 2 1063 1586 140 61 51 chr5 62685884 62686324 -89850935 + ETnERV2-int LTR ERVK 3055 3447 -3959 2 1063 3404 120 24 0 chr5 62686549 62687124 -89850135 + ETnERV2-int LTR ERVK 3441 4029 -3377 2 1063 3804 200 17 37 chr5 62687119 62688835 -89848424 + ETnERV2-int LTR ERVK 2356 3810 -1034 2 1063 4780 119 20 7 chr5 62688887 62689588 -89847671 + ETnERV2-int LTR ERVK 6494 7203 -203 2 1063 814 190 174 151 chr5 62689590 62689907 -89847352 + RLTR13D6 LTR ERVK 154 477 -378 2 1063 456 29 27 68 chr5 62689907 62689980 -89847279 + ETnERV2-int LTR ERVK 7334 7403 -3 2 1063 1104 174 178 42 chr5 62689982 62690342 -89846917 + RLTR9E LTR ERVK 1 409 0 2 1063 1563 122 25 0 chr5 62690342 62690580 -89846679 + Lx3_Mus LINE L1 6750 6993 -16 2 1063 207 300 0 0 chr5 62690584 62690644 -89846615 + A-rich Low_complexity Low_complexity 1 60 0 2 1063 331 156 78 0 chr5 62690810 62690900 -89846359 + Lx4A LINE L1 6960 7056 -2 2 1063 5943 129 56 7 chr5 62692068 62693089 -89844170 + Lx2A1 LINE L1 5936 7006 -2 2 1063 8346 8 13 0 chr5 62693554 62694635 -89842624 - L1Md_T LINE L1 0 6582 5487 2 1063 1319 217 31 7 chr5 62694718 62695010 -89842249 - Lx5 LINE L1 -3 7047 6749 2 1063 4553 82 9 0 chr5 62695009 62695645 -89841614 + L1_Mus1 LINE L1 5865 6506 -61 2 1063 6645 70 1 19 chr5 62697123 62698021 -89839238 + L1Md_F2 LINE L1 5699 6580 -2 2 1063 222 37 0 0 chr5 62698481 62698508 -89838751 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1063 442 236 22 0 chr5 62698558 62698647 -89838612 + B1_Mur1 SINE Alu 34 124 -25 2 1063 39245 7 1 0 chr5 62698859 62705566 -89831693 - L1Md_A LINE L1 0 6582 1 2 1063 1950 112 28 3 chr5 62705567 62705853 -89831406 - L1_Mus4 LINE L1 -15 6621 6329 2 1063 931 306 55 45 chr5 62706277 62706968 -89830291 + L1MB8 LINE L1 5397 6094 -84 2 1063 339 270 11 22 chr5 62707674 62707765 -89829494 - MLT1E1A LTR MaLR 0 680 591 2 1063 23 0 0 0 chr5 62708154 62708177 -89829082 + AT_rich Low_complexity Low_complexity 1 23 0 2 1063 2332 162 32 0 chr5 62708177 62708578 -89828681 - Lx4A LINE L1 0 7058 6645 2 1063 22 35 0 0 chr5 62709127 62709156 -89828103 + AT_rich Low_complexity Low_complexity 1 29 0 2 1063 369 43 0 0 chr5 62709186 62709233 -89828026 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2 1063 297 213 315 0 chr5 62709496 62709669 -89827590 - Lx9 LINE L1 -7 7637 7411 2 1063 1827 208 41 22 chr5 62709997 62710410 -89826849 - MTC LTR MaLR 0 421 1 2 1063 961 157 21 26 chr5 62710969 62711159 -89826100 + B2_Mm2 SINE B2 1 189 -6 2 1063 412 207 43 43 chr5 62713285 62713401 -89823858 + Lx3B LINE L1 6852 6967 -6 2 1063 384 344 0 0 chr5 62714292 62714414 -89822845 - RSINE1 SINE B4 -36 129 8 2 1063 884 102 15 0 chr5 62714938 62715075 -89822184 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 2 1063 8323 37 0 0 chr5 62715361 62716341 -89820918 + L1Md_F2 LINE L1 5588 6567 -15 2 1063 194 33 0 62 chr5 62716360 62716392 -89820867 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1063 642 295 100 32 chr5 62716707 62716956 -89820303 - MTD LTR MaLR -152 267 2 2 1063 39068 10 0 6 chr5 62717448 62723651 -89813608 - L1Md_A LINE L1 0 6582 422 2 1063 1080 279 28 3 chr5 62725234 62725558 -89811701 + Lx8 LINE L1 6623 6954 -519 2 1063 1014 316 101 37 chr5 62725963 62726127 -89811132 - RMER19C LTR ERVK 0 902 745 2 1063 476 32 16 0 chr5 62726127 62726189 -89811070 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 2 1063 1014 316 101 37 chr5 62726189 62726265 -89810994 - RMER19C LTR ERVK -158 744 637 2 1063 1037 110 7 0 chr5 62726265 62726410 -89810849 + B1_Mus2 SINE Alu 2 147 0 2 1063 1307 263 12 92 chr5 62726410 62726815 -89810444 - RMER19C LTR ERVK -196 415 42 2 1063 30 59 0 0 chr5 62726915 62726966 -89810293 + AT_rich Low_complexity Low_complexity 1 51 0 2 1063 399 157 0 0 chr5 62727141 62727211 -89810048 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1063 2361 53 3 0 chr5 62727235 62727536 -89809723 + L1Md_F2 LINE L1 6269 6570 -12 2 1063 2821 114 27 21 chr5 62727546 62727898 -89809361 - Lx3_Mus LINE L1 -738 6271 5919 2 1063 205 29 59 0 chr5 62727898 62727932 -89809327 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2 1063 2821 114 27 21 chr5 62727932 62728062 -89809197 - Lx3_Mus LINE L1 -1091 5918 5787 2 1063 4566 126 43 18 chr5 62728062 62728780 -89808479 + Lx3A LINE L1 6226 6968 -13 2 1063 345 47 0 0 chr5 62728780 62728823 -89808436 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1063 4566 126 43 18 chr5 62728823 62728841 -89808418 + Lx3A LINE L1 6969 6981 0 2 1063 254 223 223 0 chr5 62729251 62729354 -89807905 - RMER1C Other Other -2 1340 1215 3 1063 3566 91 9 17 chr5 62730635 62731169 -89806090 - L1_Mus4 LINE L1 -2 6634 6105 3 1063 546 309 172 36 chr5 62731336 62731726 -89805533 + LTR50 LTR ERVL 24 466 -329 3 1063 382 325 35 40 chr5 62732633 62732806 -89804453 + Tigger14a DNA MER2_type 153 324 0 3 1063 251 282 110 62 chr5 62733549 62733776 -89803483 + L2 LINE L2 1805 2042 -1377 3 1063 293 350 180 10 chr5 62734202 62734491 -89802768 + L2 LINE L2 2619 2956 -463 3 1063 423 0 0 0 chr5 62735014 62735061 -89802198 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1063 290 185 270 15 chr5 62735218 62735355 -89801904 + RMER17B LTR ERVK 293 464 -494 3 1063 297 0 0 0 chr5 62735507 62735540 -89801719 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1063 313 303 38 103 chr5 62736146 62736330 -89800929 + MLT2B4 LTR ERVL 1 172 -242 3 1063 5313 145 15 7 chr5 62736400 62737275 -89799984 - Lx3A LINE L1 -8 6973 6092 3 1063 228 301 27 27 chr5 62737850 62737925 -89799334 + MER45B DNA Tip100 961 1035 -5 3 1063 231 317 7 109 chr5 62737981 62738119 -89799140 + MT2B LTR ERVL 137 260 -341 3 1063 629 293 0 7 chr5 62738021 62738162 -89799097 + B1_Mur1 SINE Alu 10 149 0 3 1063 1052 221 74 12 chr5 62738803 62739059 -89798200 + Lx6 LINE L1 6399 6670 -790 3 1063 234 0 0 0 chr5 62739061 62739087 -89798172 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1063 564 127 0 0 chr5 62739087 62739197 -89798062 + (GA)n Simple_repeat Simple_repeat 1 110 0 3 1063 316 232 72 0 chr5 62739207 62739276 -89797983 + Lx7 LINE L1 6900 6973 -723 3 1063 952 193 66 31 chr5 62739279 62739536 -89797723 + Lx7 LINE L1 7431 7696 0 3 1063 248 222 0 16 chr5 62739644 62739662 -89797597 + polypurine Low_complexity Low_complexity 2 19 0 3 1063 594 23 34 11 chr5 62739662 62739750 -89797509 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 3 1063 248 222 0 16 chr5 62739750 62739795 -89797464 + polypurine Low_complexity Low_complexity 20 64 0 3 1063 219 330 123 45 chr5 62740496 62740740 -89796519 - L2 LINE L2 -1344 2075 1813 3 1063 34 42 0 0 chr5 62742710 62742758 -89794501 + AT_rich Low_complexity Low_complexity 1 48 0 3 1063 411 21 0 0 chr5 62744884 62744932 -89792327 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1063 1059 106 0 0 chr5 62746036 62746196 -89791063 + (TAGA)n Simple_repeat Simple_repeat 3 162 0 3 1063 2414 202 163 7 chr5 62747506 62748114 -89789145 - Lx4B LINE L1 -686 6372 5670 3 1063 1935 222 44 2 chr5 62748116 62748522 -89788737 + Lx5 LINE L1 6625 7047 -3 3 1063 8260 156 7 20 chr5 62749155 62750579 -89786680 + Lx2B LINE L1 5593 6998 -2 3 1063 2383 77 12 6 chr5 62750601 62750928 -89786331 - L1Md_F2 LINE L1 -5 6577 6249 3 1063 23 0 0 0 chr5 62751698 62751721 -89785538 + AT_rich Low_complexity Low_complexity 1 23 0 3 1063 244 359 47 20 chr5 62753039 62753187 -89784072 + MTE-int LTR MaLR 1427 1578 -2 3 1063 320 152 0 0 chr5 62754279 62754345 -89782914 - Lx9 LINE L1 -1 7643 7578 3 1063 471 48 0 0 chr5 62755170 62755232 -89782027 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1063 2832 133 9 0 chr5 62755976 62756427 -89780832 + L1_Mus4 LINE L1 6182 6636 0 3 1063 396 0 0 0 chr5 62756874 62756918 -89780341 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1063 752 285 10 40 chr5 62757378 62757579 -89779680 + B3 SINE B2 21 215 -1 3 1063 183 184 0 0 chr5 62759698 62759736 -89777523 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 3 1063 236 30 30 0 chr5 62761004 62761037 -89776222 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 3 1063 246 291 112 55 chr5 62761250 62761562 -89775697 - BLACKJACK DNA AcHobo -4 2940 2611 3 1063 348 215 20 122 chr5 62761588 62761736 -89775523 + L1M2 LINE L1 3344 3476 -2667 3 1063 444 300 110 28 chr5 62762347 62762376 -89774883 - L1MA7 LINE L1 -1 6290 6262 3 1063 351 44 0 0 chr5 62762376 62762421 -89774838 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1063 444 300 110 28 chr5 62762421 62762560 -89774699 - L1MA7 LINE L1 -30 6261 6107 3 1063 1326 173 180 0 chr5 62762560 62762838 -89774421 + ORR1A4 LTR MaLR 1 328 -1 3 1063 444 300 110 28 chr5 62762838 62763103 -89774156 - L1MA7 LINE L1 -185 6106 5821 3 1063 323 325 0 0 chr5 62763340 62763463 -89773796 - L1M4 LINE L1 -1518 4622 4500 3 1063 1059 94 0 0 chr5 62763755 62763935 -89773324 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1063 268 311 30 0 chr5 62763951 62764086 -89773173 + (TG)n Simple_repeat Simple_repeat 2 140 0 3 1063 660 330 22 0 chr5 62764098 62764277 -89772982 - B4A SINE B4 -4 288 106 3 1063 373 270 115 38 chr5 62764323 62764558 -89772701 - L1M4 LINE L1 -2229 3917 3665 3 1063 27 73 0 0 chr5 62764881 62764936 -89772323 + AT_rich Low_complexity Low_complexity 1 55 0 3 1063 189 230 31 47 chr5 62765584 62765648 -89771611 - L4 LINE RTE -182 1847 1785 3 1063 267 31 0 0 chr5 62765695 62765727 -89771532 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1063 317 289 66 10 chr5 62765885 62766081 -89771178 + L1_Mur3 LINE L1 49 255 -7473 3 1063 868 238 81 6 chr5 62766284 62766839 -89770420 + L1_Mur3 LINE L1 861 1465 -4412 3 1063 823 218 6 0 chr5 62766840 62766996 -89770263 - B2_Mm2 SINE B2 -37 158 2 3 1063 2003 82 18 0 chr5 62766997 62767277 -89769982 + Lx3_Mus LINE L1 6725 7009 0 3 1063 2407 186 86 42 chr5 62767307 62767969 -89769290 + L1_Mur3 LINE L1 1474 2164 -3716 3 1063 3677 259 51 36 chr5 62768035 62769367 -89767892 + RMER1A Other Other 2 1029 -1 3 1063 424 320 131 60 chr5 62769765 62770117 -89767142 - MTEa LTR MaLR 0 379 3 3 1063 911 107 57 0 chr5 62770331 62770471 -89766788 - B1_Mus1 SINE Alu 0 148 1 3 1063 181 274 26 52 chr5 62771023 62771100 -89766159 - L4 LINE RTE -1378 651 577 3 1063 195 162 0 0 chr5 62771732 62771769 -89765490 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1063 1966 115 38 10 chr5 62771844 62772135 -89765124 + Lx3B LINE L1 5587 5885 -1088 3 1063 1752 355 46 23 chr5 62772165 62773121 -89764138 - Lx8 LINE L1 -199 7274 6297 3 1063 22 94 0 0 chr5 62773324 62773388 -89763871 + AT_rich Low_complexity Low_complexity 1 64 0 3 1063 1753 55 50 8 chr5 62774126 62774364 -89762895 - L1Md_F2 LINE L1 -10 6572 6325 3 1063 378 0 0 0 chr5 62774821 62774863 -89762396 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1063 502 312 168 44 chr5 62776128 62776443 -89760816 + ORR1E LTR MaLR 1 354 -5 3 1063 1045 227 35 23 chr5 62776550 62776807 -89760452 - Lx7 LINE L1 -354 7342 7083 3 1063 216 0 0 0 chr5 62776926 62776950 -89760309 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1063 369 238 48 0 chr5 62776963 62777047 -89760212 - Lx7 LINE L1 -483 7213 7126 3 1063 573 15 0 0 chr5 62777084 62777150 -89760109 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1063 44 20 0 0 chr5 62777315 62777366 -89759893 + AT_rich Low_complexity Low_complexity 1 51 0 3 1063 25 51 0 0 chr5 62777698 62777737 -89759522 + AT_rich Low_complexity Low_complexity 1 39 0 3 1063 386 296 39 16 chr5 62778564 62778691 -89758568 - LTR33 LTR ERVL -371 144 15 3 1063 5570 178 33 12 chr5 62780114 62781184 -89756075 + Lx2B LINE L1 5901 6992 -8 3 1063 21 0 0 0 chr5 62781917 62781938 -89755321 + AT_rich Low_complexity Low_complexity 1 21 0 3 1063 21 36 0 0 chr5 62782721 62782749 -89754510 + AT_rich Low_complexity Low_complexity 1 28 0 3 1063 324 341 78 23 chr5 62782888 62783017 -89754242 - B4A SINE B4 -4 288 153 3 1063 303 241 24 37 chr5 62783055 62783137 -89754122 - L1_Mur3 LINE L1 -1950 3930 3850 3 1063 295 216 0 0 chr5 62783188 62783239 -89754020 - B4 SINE B4 -231 61 11 3 132 2020 121 5 112 chr5 62783384 62783659 -89753600 - MusHAL1 LINE L1 -1459 1253 1019 3 1064 3466 90 6 2 chr5 62783659 62784137 -89753122 - L1_Mus3 LINE L1 -4 6634 6155 3 1064 2020 121 5 112 chr5 62784137 62784288 -89752971 - MusHAL1 LINE L1 -1694 1018 873 3 1064 572 349 26 4 chr5 62784293 62784523 -89752736 - MLT2D LTR ERVL -179 235 1 3 1064 34896 50 4 8 chr5 62784791 62789964 -89747295 + L1Md_F2 LINE L1 440 5586 -297 3 1064 7844 54 3 6 chr5 62789964 62790963 -89746296 + L1Md_F2 LINE L1 5587 6582 0 3 1064 180 111 0 0 chr5 62791028 62791055 -89746204 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1064 348 64 0 0 chr5 62791176 62791223 -89746036 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1064 201 74 0 0 chr5 62791225 62791252 -89746007 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 1064 2509 158 5 5 chr5 62791361 62791794 -89745465 - L1_Mur2 LINE L1 -523 5354 4922 3 1064 6806 106 43 2 chr5 62791783 62793009 -89744250 + L1_Mus4 LINE L1 5358 6632 -4 3 1064 662 91 10 0 chr5 62793610 62793709 -89743550 + (TC)n Simple_repeat Simple_repeat 2 101 0 3 1064 25 0 0 0 chr5 62795534 62795559 -89741700 + AT_rich Low_complexity Low_complexity 1 25 0 3 1064 315 243 80 67 chr5 62797598 62797748 -89739511 + MIRc SINE MIR 103 254 -14 3 1064 312 111 0 0 chr5 62799331 62799385 -89737874 + (A)n Simple_repeat Simple_repeat 1 54 0 3 1064 32224 93 8 5 chr5 62799440 62804896 -89732363 - L1Md_F2 LINE L1 -2 6580 1105 3 1064 8034 45 0 6 chr5 62804902 62806083 -89731176 - L1Md_F2 LINE L1 -4 6578 5407 3 1064 5785 60 77 72 chr5 62806071 62806443 -89730816 + L1Md_F2 LINE L1 4496 4896 -987 3 1064 236 167 46 77 chr5 62806443 62806508 -89730751 - RMER20A LTR ERVK -268 248 186 3 1064 5785 60 77 72 chr5 62806508 62806995 -89730264 + L1Md_F2 LINE L1 4897 5423 -460 3 1064 717 66 0 0 chr5 62806978 62807069 -89730190 - L1VL1 LINE L1 -5518 904 814 3 1064 4371 71 22 2 chr5 62807069 62807734 -89729525 - L1VL1 LINE L1 -5341 1077 367 3 1064 254 233 45 23 chr5 62807812 62807900 -89729359 + L2 LINE L2 2805 2894 -525 3 1064 195 42 0 0 chr5 62808173 62808197 -89729062 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1064 414 0 0 0 chr5 62808204 62808250 -89729009 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1064 387 336 17 0 chr5 62808273 62808389 -89728870 - RSINE1 SINE B4 -44 121 4 3 1064 1264 183 152 48 chr5 62809088 62809278 -89727981 + ORR1B1 LTR MaLR 41 253 -141 3 1064 4877 110 30 22 chr5 62809278 62810079 -89727180 + RMER17D2 LTR ERVK 1 807 -2 3 1064 1264 183 152 48 chr5 62810079 62810204 -89727055 + ORR1B1 LTR MaLR 254 389 -5 3 1064 229 328 146 22 chr5 62811269 62811447 -89725812 - MLT1A1 LTR MaLR -208 200 1 3 1064 396 0 0 0 chr5 62811522 62811566 -89725693 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1064 760 161 55 18 chr5 62811578 62811742 -89725517 - Lx LINE L1 -7 6647 6478 4 1064 344 157 29 0 chr5 62812319 62812389 -89724870 + A-rich Low_complexity Low_complexity 2 73 0 4 1064 1277 78 6 0 chr5 62812390 62812569 -89724690 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1064 1175 264 77 29 chr5 62812827 62813178 -89724081 + MTE2b LTR MaLR 3 370 -9 4 1064 645 263 39 7 chr5 62813419 62813572 -89723687 + ID_B1 SINE B4 67 224 0 4 1064 183 114 0 0 chr5 62813577 62813612 -89723647 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 4 1064 38 0 0 0 chr5 62814375 62814413 -89722846 + AT_rich Low_complexity Low_complexity 1 38 0 4 1064 3271 187 65 28 chr5 62815788 62816585 -89720674 + L1Md_F LINE L1 410 1236 -5380 4 1064 4400 110 4 27 chr5 62816551 62817292 -89719967 + MusHAL1 LINE L1 1 724 -1988 4 1064 2096 119 0 0 chr5 62817289 62817601 -89719658 + L1Md_F LINE L1 4548 4859 -1024 4 1064 1081 80 0 150 chr5 62817600 62817807 -89719452 - L1Md_T LINE L1 -491 6091 5916 4 1064 279 0 0 0 chr5 62817890 62817921 -89719338 + (TTC)n Simple_repeat Simple_repeat 1 31 0 4 1064 429 20 0 0 chr5 62817921 62817971 -89719288 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 1064 260 254 16 0 chr5 62818058 62818121 -89719138 - B3A SINE B2 -132 66 3 4 1064 35385 35 0 0 chr5 62818752 62824217 -89713042 + L1Md_T LINE L1 28 5589 -297 4 1064 8940 7 0 0 chr5 62824217 62825213 -89712046 + L1Md_T LINE L1 5590 6585 0 4 1064 24 0 0 0 chr5 62825637 62825661 -89711598 + AT_rich Low_complexity Low_complexity 1 24 0 4 1064 30 0 0 0 chr5 62825688 62825718 -89711541 + AT_rich Low_complexity Low_complexity 1 30 0 4 1064 1414 320 67 40 chr5 62826577 62827336 -89709923 - Lx8 LINE L1 -317 7156 6377 4 1064 2711 160 77 55 chr5 62827339 62828014 -89709245 + RMER6C LTR ERVK 1 690 0 4 1064 308 342 66 51 chr5 62828130 62828327 -89708932 + MER21B LTR ERV1 336 535 -328 4 1064 25 0 0 0 chr5 62828392 62828417 -89708842 + AT_rich Low_complexity Low_complexity 1 25 0 4 1064 890 268 129 32 chr5 62828771 62829142 -89708117 - MTD LTR MaLR 0 419 6 4 1064 468 0 0 0 chr5 62829160 62829212 -89708047 + (TTG)n Simple_repeat Simple_repeat 1 52 0 4 1064 597 28 0 0 chr5 62829212 62829283 -89707976 + (TTC)n Simple_repeat Simple_repeat 2 72 0 4 1064 409 80 296 26 chr5 62829283 62829398 -89707861 - L1_Mus3 LINE L1 -12 6626 6481 4 1064 186 43 0 0 chr5 62829700 62829723 -89707536 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1064 22 0 0 0 chr5 62829723 62829745 -89707514 + AT_rich Low_complexity Low_complexity 1 22 0 4 1064 4226 116 17 5 chr5 62829745 62830380 -89706879 - Lx2 LINE L1 -1 6996 6354 4 1064 288 250 0 129 chr5 62831014 62831115 -89706144 + RMER15 LTR ERVL 367 454 -121 4 1064 1645 26 5 0 chr5 62831142 62831334 -89705925 + B2_Mm1t SINE B2 1 193 0 4 1064 257 328 76 0 chr5 62831338 62831457 -89705802 + RMER15 LTR ERVL 448 575 0 4 1064 306 343 90 58 chr5 62831459 62831648 -89705611 + MER21B LTR ERV1 538 732 -131 4 1064 9804 94 11 13 chr5 62832841 62834721 -89702538 + L1Md_A LINE L1 762 2633 -3250 4 1064 9511 26 2 0 chr5 62834717 62836510 -89700749 - L1Md_A LINE L1 -2 6580 4784 4 1064 12296 178 122 5 chr5 62836508 62839161 -89698098 + L1_Mur2 LINE L1 2612 5574 -303 4 1064 7196 80 21 5 chr5 62839166 62840145 -89697114 + L1Md_F2 LINE L1 5587 6581 -1 4 1064 184 276 114 11 chr5 62840253 62840341 -89696918 + MIRb SINE MIR 113 209 -59 4 1064 4986 104 40 4 chr5 62840455 62841201 -89696058 + L1_Mus3 LINE L1 5866 6638 0 4 1064 33 25 0 0 chr5 62841238 62841278 -89695981 + AT_rich Low_complexity Low_complexity 1 40 0 4 1064 217 222 37 0 chr5 62842184 62842238 -89695021 + GA-rich Low_complexity Low_complexity 4 59 0 4 1064 1063 292 73 39 chr5 62842455 62842937 -89694322 - RMER5 LTR ERV1 -28 506 9 4 1064 379 283 80 109 chr5 62843285 62843587 -89693672 + RMER10A LTR ERVL 122 414 -28 4 1064 250 277 55 82 chr5 62843900 62844010 -89693249 + MER67C LTR ERV1 4 110 -601 4 1064 207 0 0 0 chr5 62844044 62844067 -89693192 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1064 23 33 0 0 chr5 62844611 62844641 -89692618 + AT_rich Low_complexity Low_complexity 1 30 0 4 1064 4496 64 2 0 chr5 62844724 62845375 -89691884 - L1_Mus2 LINE L1 -410 6156 5505 4 1064 2006 67 4 4 chr5 62845375 62845645 -89691614 + L1_Mus2 LINE L1 6285 6554 -12 4 1064 28 0 0 0 chr5 62845645 62845673 -89691586 + AT_rich Low_complexity Low_complexity 1 28 0 4 1064 230 0 0 32 chr5 62847137 62847168 -89690091 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1064 294 232 52 21 chr5 62848267 62848364 -89688895 - MLT1G3 LTR MaLR -8 587 488 4 1064 762 325 33 12 chr5 62848925 62849168 -89688091 + B4A SINE B4 5 252 -40 4 1064 982 289 20 53 chr5 62849900 62849953 -89687306 + Lx6 LINE L1 7089 7146 -314 4 1064 279 0 0 0 chr5 62849953 62849984 -89687275 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1064 2524 72 9 6 chr5 62849992 62850342 -89686917 - L1_Mus4 LINE L1 -7 6629 6279 4 1064 982 289 20 53 chr5 62850342 62850637 -89686622 + Lx6 LINE L1 7148 7434 -26 4 1064 22 35 0 0 chr5 62850691 62850720 -89686539 + AT_rich Low_complexity Low_complexity 1 29 0 4 1064 577 253 36 21 chr5 62850849 62851043 -89686216 + L1MC5 LINE L1 7003 7199 -762 4 1064 267 309 9 0 chr5 62851208 62851318 -89685941 + L1MC5 LINE L1 7304 7414 -547 4 1064 234 69 0 0 chr5 62851387 62851416 -89685843 + L1MC5 LINE L1 7539 7567 -394 4 1064 322 252 167 24 chr5 62851830 62851956 -89685303 - Lx9 LINE L1 -965 6679 6536 4 1064 442 183 0 58 chr5 62851938 62852025 -89685234 + Lx9 LINE L1 7124 7205 -439 4 1064 381 185 11 58 chr5 62852020 62852137 -89685122 + Lx7 LINE L1 4709 4854 -1292 4 1064 1668 152 161 18 chr5 62852138 62852479 -89684780 + MTC LTR MaLR 24 413 -8 4 1064 23 0 0 0 chr5 62852490 62852513 -89684746 + AT_rich Low_complexity Low_complexity 1 23 0 4 1064 2227 180 175 46 chr5 62852560 62853171 -89684088 + RMER6C LTR ERVK 1 690 0 4 1064 899 149 14 0 chr5 62853185 62853333 -89683926 + Lx3C LINE L1 6262 6411 -565 4 1064 279 180 16 32 chr5 62853328 62853391 -89683868 + Lx4B LINE L1 6499 6560 -498 4 1064 941 222 25 98 chr5 62853437 62853752 -89683507 + RLTR9A LTR ERVK 77 368 0 4 1064 1746 201 58 3 chr5 62853752 62854111 -89683148 + Lx3C LINE L1 6556 6934 -42 4 1064 22 0 0 0 chr5 62854114 62854136 -89683123 + AT_rich Low_complexity Low_complexity 1 22 0 4 1064 231 36 0 0 chr5 62854410 62854438 -89682821 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1064 655 284 83 27 chr5 62854447 62854890 -89682369 - L1MA4 LINE L1 -212 5959 5473 4 1064 3762 169 28 59 chr5 62854899 62855664 -89681595 + RMER6A LTR ERVK 4 744 -12 4 1064 380 315 90 25 chr5 62855677 62856032 -89681227 - L1_Rod LINE L1 -438 5409 5032 4 1064 2634 238 26 16 chr5 62856047 62856982 -89680277 + Lx7 LINE L1 5287 6235 -1461 4 1064 721 184 29 14 chr5 62856966 62857104 -89680155 + Lx7 LINE L1 5483 5622 -258 4 1064 798 168 150 0 chr5 62857103 62857270 -89679989 - Lx6 LINE L1 -501 6959 6768 4 1064 303 93 0 0 chr5 62857271 62857314 -89679945 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1064 3548 214 67 29 chr5 62857341 62858264 -89678995 - Lx6 LINE L1 -926 6534 5574 4 1064 2593 63 134 3 chr5 62858264 62858614 -89678645 - MTA_Mm LTR MaLR 0 396 1 4 1064 2105 183 49 16 chr5 62858614 62858752 -89678507 - Lx6 LINE L1 -307 5573 5439 4 1064 223 104 42 0 chr5 62858752 62858800 -89678459 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 4 1064 199 196 0 80 chr5 62859372 62859422 -89677837 - L4 LINE RTE 0 2029 1984 4 1064 209 33 0 32 chr5 62860261 62860292 -89676967 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4 1064 1596 209 179 12 chr5 62860416 62860942 -89676317 + Lx2B LINE L1 6316 6979 -18 4 1064 399 41 0 0 chr5 62862267 62862316 -89674943 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 4 1064 27 0 0 0 chr5 62862575 62862602 -89674657 + AT_rich Low_complexity Low_complexity 1 27 0 4 1064 210 394 30 10 chr5 62862928 62863028 -89674231 + B3A SINE B2 79 180 -18 4 1064 216 0 0 0 chr5 62863052 62863076 -89674183 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1064 733 299 90 34 chr5 62863974 62864241 -89673018 + MTE2b LTR MaLR 70 351 -28 4 1064 370 362 58 23 chr5 62866213 62866470 -89670789 + MLT1C LTR MaLR 202 467 0 4 1064 1017 251 26 48 chr5 62866812 62867080 -89670179 - Lx5 LINE L1 -3 7047 6786 4 1064 1226 260 14 43 chr5 62867086 62867553 -89669706 + Lx5 LINE L1 6319 6769 -289 4 1064 315 0 0 0 chr5 62868378 62868413 -89668846 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1064 414 79 0 0 chr5 62868413 62868475 -89668784 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1064 357 86 0 0 chr5 62869089 62869147 -89668112 + (TTGG)n Simple_repeat Simple_repeat 2 59 0 4 1064 7245 116 17 8 chr5 62869159 62870314 -89666945 - Lx LINE L1 -2 6652 5485 4 1064 546 177 0 0 chr5 62870827 62870951 -89666308 + CT-rich Low_complexity Low_complexity 1 124 0 4 1064 432 332 65 35 chr5 62871685 62871885 -89665374 - LTR40c LTR ERVL -216 249 44 4 1064 23 0 0 0 chr5 62872285 62872308 -89664951 + AT_rich Low_complexity Low_complexity 1 23 0 4 1064 216 0 0 0 chr5 62873837 62873861 -89663398 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 4 1064 1169 62 0 0 chr5 62873868 62874014 -89663245 - B1_Mus2 SINE Alu 0 147 2 4 1064 363 337 119 83 chr5 62874163 62874441 -89662818 + B4A SINE B4 5 292 0 4 1064 768 297 110 43 chr5 62875729 62876120 -89661139 - Lx8 LINE L1 -8 7465 7049 4 1064 443 294 180 22 chr5 62876242 62876558 -89660701 - Lx8 LINE L1 -609 6864 6499 4 1064 5214 72 0 4 chr5 62876559 62877265 -89659994 - L1_Mm LINE L1 -1569 4314 3612 4 1064 4668 67 22 8 chr5 62877265 62877886 -89659373 + L1Md_F2 LINE L1 5953 6582 0 4 1064 1118 276 14 7 chr5 62877887 62878172 -89659087 - Lx8 LINE L1 -960 6513 6227 4 1064 465 336 0 0 chr5 62878276 62878401 -89658858 - RSINE1 SINE B4 -34 131 7 4 1064 186 43 0 0 chr5 62878896 62878919 -89658340 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1064 1097 69 0 27 chr5 62879025 62879174 -89658085 + B1_Mus2 SINE Alu 3 147 0 4 1064 769 328 113 26 chr5 62880039 62880465 -89656794 + MLT1C LTR MaLR 1 463 -4 4 1064 261 216 39 39 chr5 62882497 62882574 -89654685 + L1MC4 LINE L1 7446 7522 -520 4 1064 3178 143 49 11 chr5 62882574 62883141 -89654118 + Lx2 LINE L1 6407 6995 -2 5 1064 249 263 7 14 chr5 62883432 62883571 -89653688 + CT-rich Low_complexity Low_complexity 2 139 0 5 1064 1224 137 16 0 chr5 62883859 62884049 -89653210 - B2_Mm2 SINE B2 -2 193 1 5 1064 328 185 288 29 chr5 62884138 62884277 -89652982 - Lx2B LINE L1 -4 6996 6822 5 1064 603 224 104 0 chr5 62884562 62884696 -89652563 + B1_Mur1 SINE Alu 2 149 0 5 1064 674 233 7 0 chr5 62884702 62884848 -89652411 + B1_Mus1 SINE Alu 1 147 -1 5 1064 21 0 0 0 chr5 62884892 62884913 -89652346 + AT_rich Low_complexity Low_complexity 1 21 0 5 1064 360 304 28 48 chr5 62885040 62885185 -89652074 + B1F SINE Alu 1 142 -7 5 1064 180 200 0 0 chr5 62885299 62885349 -89651910 + GA-rich Low_complexity Low_complexity 3 52 0 5 1064 182 37 37 0 chr5 62885624 62885651 -89651608 + (GAAA)n Simple_repeat Simple_repeat 4 31 0 5 1064 303 49 0 0 chr5 62886182 62886223 -89651036 + (TTA)n Simple_repeat Simple_repeat 3 43 0 5 1064 1173 316 44 115 chr5 62886610 62887410 -89649849 - Lx9 LINE L1 -355 7289 6547 5 1064 303 52 34 17 chr5 62887776 62887835 -89649424 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 5 1064 207 0 0 0 chr5 62887874 62887897 -89649362 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1064 378 294 76 38 chr5 62888117 62888379 -89648880 - Lx8 LINE L1 -30 7443 7172 5 1064 1103 122 0 11 chr5 62888395 62888577 -89648682 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1064 823 165 11 0 chr5 62888577 62888753 -89648506 + CT-rich Low_complexity Low_complexity 1 178 0 5 1064 1190 96 11 0 chr5 62888777 62888955 -89648304 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1064 392 305 53 16 chr5 62888955 62889136 -89648123 - Lx8 LINE L1 -319 7154 6967 5 1064 25 51 0 0 chr5 62889381 62889420 -89647839 + AT_rich Low_complexity Low_complexity 1 39 0 5 1064 507 73 0 0 chr5 62889636 62889704 -89647555 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1064 213 39 0 0 chr5 62889704 62889729 -89647530 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 1064 413 300 96 81 chr5 62891402 62891674 -89645585 + B4 SINE B4 1 276 -16 5 1064 381 75 0 0 chr5 62891709 62891762 -89645497 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1064 363 44 0 0 chr5 62891762 62891806 -89645453 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1064 5674 142 47 41 chr5 62892283 62893342 -89643917 - Lx2B LINE L1 0 7000 5935 5 1064 390 328 8 8 chr5 62893800 62893917 -89643342 + B4 SINE B4 170 286 -6 5 1064 1046 308 101 90 chr5 62894117 62894891 -89642368 - LTR48 LTR ERV1 -3 784 3 5 1064 271 350 20 20 chr5 62895072 62895171 -89642088 + B4 SINE B4 40 138 -154 5 1064 21 0 0 0 chr5 62895605 62895626 -89641633 + AT_rich Low_complexity Low_complexity 1 21 0 5 1064 310 297 135 38 chr5 62895642 62896383 -89640876 + L1MC LINE L1 2310 3157 -2989 5 1064 255 256 148 12 chr5 62896486 62896648 -89640611 - L1MC4 LINE L1 -202 6142 5959 5 1064 443 293 20 13 chr5 62896675 62896827 -89640432 - Lx5 LINE L1 -5 7045 6893 5 1064 1687 177 39 0 chr5 62896828 62896907 -89640352 + Lx5 LINE L1 5709 5787 -1263 5 1064 2067 39 8 0 chr5 62896907 62897164 -89640095 + L1Md_F2 LINE L1 6324 6582 0 5 1064 1687 177 39 0 chr5 62897164 62897440 -89639819 + Lx5 LINE L1 5788 6077 -973 5 1064 486 302 115 18 chr5 62897546 62897876 -89639383 - L1MC4 LINE L1 -2130 5912 5551 5 1064 2075 141 0 12 chr5 62898424 62898754 -89638505 - ORR1A3 LTR MaLR 0 326 1 5 1064 1215 271 103 6 chr5 62898982 62899708 -89637551 + L1M2 LINE L1 1618 2414 -4435 5 1064 248 282 61 8 chr5 62899973 62900178 -89637081 + L1M2 LINE L1 2716 2932 -3913 5 1064 411 157 0 0 chr5 62900334 62900423 -89636836 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 5 1064 189 0 0 0 chr5 62900424 62900445 -89636814 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1064 378 0 0 0 chr5 62900445 62900486 -89636773 + (GA)n Simple_repeat Simple_repeat 2 43 0 5 1064 196 341 77 0 chr5 62900491 62900582 -89636677 + L2c LINE L2 3063 3160 -227 5 1064 370 105 0 38 chr5 62901041 62901120 -89636139 - L1Md_F3 LINE L1 -9 6575 6500 5 1064 595 327 31 34 chr5 62902351 62902645 -89634614 + LTR37A LTR ERV1 111 403 -23 5 1064 1257 271 26 38 chr5 62903453 62903875 -89633384 - Lx8 LINE L1 -439 7034 6618 5 1064 6893 98 16 3 chr5 62903951 62905294 -89631965 - L1_Mus3 LINE L1 -9 6629 5271 5 1064 825 246 42 5 chr5 62907183 62907399 -89629860 + URR1B DNA MER1_type 2 225 0 5 1064 1567 56 0 0 chr5 62908657 62908854 -89628405 + L1Md_T LINE L1 6384 6580 -2 5 1064 501 62 0 0 chr5 62909968 62910033 -89627226 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1064 207 0 0 0 chr5 62910294 62910317 -89626942 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1064 315 49 0 0 chr5 62910630 62910671 -89626588 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 5 1064 1927 194 42 8 chr5 62910671 62911055 -89626204 - Lx5 LINE L1 -18 7032 6636 5 1064 203 271 11 23 chr5 62911697 62911784 -89625475 + GA-rich Low_complexity Low_complexity 2 87 0 5 1064 204 154 26 0 chr5 62912369 62912408 -89624851 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 1064 1905 251 86 77 chr5 62912725 62914306 -89622953 - RMER1B Other Other -16 1050 4 5 1065 609 40 0 0 chr5 62915464 62915540 -89621719 + (TA)n Simple_repeat Simple_repeat 1 76 0 5 1065 38 22 0 0 chr5 62915545 62915590 -89621669 + AT_rich Low_complexity Low_complexity 1 45 0 5 1065 387 0 0 0 chr5 62915707 62915750 -89621509 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1065 300 53 0 0 chr5 62915768 62915806 -89621453 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1065 372 22 0 0 chr5 62915806 62915850 -89621409 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1065 35962 16 3 7 chr5 62915865 62921060 -89616199 + L1Md_A LINE L1 416 5585 -298 5 1065 8648 18 2 0 chr5 62921061 62922054 -89615205 + L1Md_A LINE L1 5587 6581 -1 5 1065 411 222 0 0 chr5 62922077 62922194 -89615065 + (TA)n Simple_repeat Simple_repeat 1 117 0 5 1065 237 43 42 21 chr5 62922704 62922752 -89614507 + (TTTTTG)n Simple_repeat Simple_repeat 3 51 0 5 1065 763 309 69 0 chr5 62922753 62922970 -89614289 - MLT1A0 LTR MaLR -72 293 62 5 1065 6600 105 38 2 chr5 62923359 62924388 -89612871 + L1Md_F2 LINE L1 4517 5582 -301 5 1065 6809 94 6 31 chr5 62924393 62925410 -89611849 + L1Md_F2 LINE L1 5588 6578 -4 5 1065 1207 82 27 27 chr5 62925627 62925814 -89611445 + B2_Mm1t SINE B2 1 187 -6 5 1065 2604 197 16 2 chr5 62925827 62926335 -89610924 + Lx5 LINE L1 6278 6792 -258 5 1065 468 0 0 0 chr5 62926335 62926387 -89610872 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1065 7605 19 0 2 chr5 62926614 62927534 -89609725 + L1Md_T LINE L1 4669 5586 -297 5 1065 7970 56 0 2 chr5 62927534 62928532 -89608727 + L1Md_T LINE L1 5587 6582 0 5 1065 677 308 34 43 chr5 62928547 62928781 -89608478 + B4A SINE B4 1 232 -60 5 1065 508 201 221 7 chr5 62928790 62928930 -89608329 + RMER1B Other Other 721 890 -176 5 1065 1580 238 102 9 chr5 62930014 62930506 -89606753 + RMER1B Other Other 400 1054 -12 5 1065 551 295 108 69 chr5 62930605 62930911 -89606348 + LTR53 LTR ERVL 190 507 -12 5 1065 315 252 142 34 chr5 62931739 62931944 -89605315 - Charlie5 DNA MER1_type -9 2615 2389 5 1065 6414 79 3 15 chr5 62931975 62933282 -89603977 - L1Md_F2 LINE L1 -12 6570 5286 5 1065 13324 101 71 1 chr5 62933265 62936110 -89601149 - L1Md_F2 LINE L1 -2469 3414 369 5 1065 822 159 0 15 chr5 62936130 62936264 -89600995 - B1_Mur3 SINE Alu 0 149 18 5 1065 188 35 35 0 chr5 62936264 62936293 -89600966 + (CCA)n Simple_repeat Simple_repeat 3 32 0 5 1065 185 295 13 13 chr5 62936914 62936993 -89600266 + MIRb SINE MIR 88 166 -102 5 1065 26 30 0 0 chr5 62938035 62938068 -89599191 + AT_rich Low_complexity Low_complexity 1 33 0 5 1065 276 229 114 98 chr5 62938795 62938837 -89598422 - B2_Mm2 SINE B2 -7 188 2 5 1065 601 250 7 14 chr5 62938837 62938979 -89598280 - RSINE1 SINE B4 -22 143 3 5 1065 4633 9 0 0 chr5 62939066 62939614 -89597645 + L1Md_A LINE L1 5039 5586 -297 5 1065 8368 30 3 2 chr5 62939614 62940608 -89596651 + L1Md_A LINE L1 5587 6581 -1 5 1065 336 111 0 0 chr5 62940720 62940774 -89596485 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1065 627 14 0 0 chr5 62942815 62942887 -89594372 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1065 420 354 84 4 chr5 62942918 62943179 -89594080 - B4 SINE B4 -8 284 3 5 1065 846 47 0 0 chr5 62943536 62943643 -89593616 + (TG)n Simple_repeat Simple_repeat 1 107 0 5 1065 677 260 0 26 chr5 62943799 62943953 -89593306 + ORR1D1 LTR MaLR 13 162 -212 5 1065 312 48 0 0 chr5 62943953 62943995 -89593264 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5 1065 3885 91 61 10 chr5 62943997 62944575 -89592684 - L1_Mus4 LINE L1 -11 6625 6019 5 1065 475 292 56 20 chr5 62944585 62944781 -89592478 + ORR1D1 LTR MaLR 172 374 0 5 1065 201 231 38 19 chr5 62944806 62944859 -89592400 + MIRm SINE MIR 219 272 -4 5 1065 240 329 127 35 chr5 62944985 62945158 -89592101 + MER5A DNA MER1_type 1 189 0 5 1065 21 0 0 0 chr5 62945962 62945983 -89591276 + AT_rich Low_complexity Low_complexity 1 21 0 5 1065 236 299 30 107 chr5 62946141 62946272 -89590987 - MTEa LTR MaLR -18 361 241 5 1065 590 331 43 13 chr5 62947016 62947293 -89589966 - MER54A LTR ERVL -5 896 550 5 1065 631 311 106 51 chr5 62947317 62947571 -89589688 + MTEa LTR MaLR 3 270 -109 5 1065 596 342 128 43 chr5 62947685 62948195 -89589064 - MER54A LTR ERVL -327 574 22 5 1065 248 208 0 0 chr5 62948830 62948878 -89588381 + Lx8 LINE L1 6872 6919 -554 5 1065 185 373 77 51 chr5 62948946 62949141 -89588118 - L2b LINE L2 -167 3208 3009 5 1065 1097 278 54 10 chr5 62949153 62949466 -89587793 - Lx8 LINE L1 -279 7194 6868 5 1065 578 284 129 20 chr5 62949474 62949729 -89587530 + Lx8 LINE L1 7191 7473 0 5 1065 1002 305 9 25 chr5 62949915 62950231 -89587028 + MTE2b LTR MaLR 16 326 -53 5 1065 38 51 0 0 chr5 62950708 62950767 -89586492 + AT_rich Low_complexity Low_complexity 1 59 0 5 1065 6438 152 4 29 chr5 62952272 62953420 -89583839 - Lx2 LINE L1 0 6997 5878 5 1065 584 275 8 0 chr5 62954259 62954390 -89582869 + B1_Mur1 SINE Alu 17 148 -1 5 1065 1927 162 25 85 chr5 62954724 62954909 -89582350 - RMER1C Other Other -1 1341 1159 5 1065 547 223 86 166 chr5 62954909 62955372 -89581887 + RLTR23 LTR ERV1 1 426 -4 6 1065 1927 162 25 85 chr5 62955372 62955623 -89581636 - RMER1C Other Other -184 1158 931 5 1065 472 236 36 25 chr5 62956261 62956393 -89580866 + MLT1B LTR MaLR 262 378 -12 6 1065 183 80 0 0 chr5 62957193 62957218 -89580041 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 6 1065 1162 61 0 0 chr5 62957218 62957365 -89579894 - B1_Mus2 SINE Alu 0 147 1 6 1065 186 43 0 0 chr5 62957569 62957592 -89579667 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1065 27 29 0 0 chr5 62957608 62957642 -89579617 + AT_rich Low_complexity Low_complexity 1 34 0 6 1065 1167 188 9 13 chr5 62958252 62958479 -89578780 + URR1A DNA MER1_type 1 226 0 6 1065 314 49 48 16 chr5 62958508 62958570 -89578689 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1065 318 241 36 60 chr5 62958572 62958656 -89578603 - MT2A LTR ERVL -73 460 379 6 1065 537 250 8 8 chr5 62958685 62958814 -89578445 - MT2A LTR ERVL -404 129 1 6 1065 8136 26 0 3 chr5 62958902 62959834 -89577425 - RLTR13B3 LTR ERVK 0 929 1 6 1065 7643 158 46 21 chr5 62960135 62960478 -89576781 - Lx4A LINE L1 -11 7047 6692 6 1065 4087 185 97 8 chr5 62960478 62961262 -89575997 + RMER13A LTR ERVK 3 856 -4 6 1065 7643 151 43 11 chr5 62961262 62962705 -89574554 - Lx4A LINE L1 -367 6691 5203 6 1065 1226 191 4 0 chr5 62962694 62962925 -89574334 + L1_Mur2 LINE L1 4404 4635 -1242 6 1065 21 0 0 0 chr5 62963360 62963381 -89573878 + AT_rich Low_complexity Low_complexity 1 21 0 6 1065 479 196 0 7 chr5 62964682 62964831 -89572428 + (TG)n Simple_repeat Simple_repeat 1 148 0 6 1065 21 36 0 0 chr5 62965306 62965334 -89571925 + AT_rich Low_complexity Low_complexity 1 28 0 6 1065 184 161 17 35 chr5 62965461 62965519 -89571740 + A-rich Low_complexity Low_complexity 3 59 0 6 1065 783 304 75 39 chr5 62965728 62966060 -89571199 - ORR1E LTR MaLR -9 350 7 6 1065 531 138 0 0 chr5 62966113 62966200 -89571059 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 1065 22 0 0 0 chr5 62966251 62966273 -89570986 + AT_rich Low_complexity Low_complexity 1 22 0 6 1065 33 43 0 0 chr5 62966816 62966863 -89570396 + AT_rich Low_complexity Low_complexity 1 47 0 6 1065 249 311 0 51 chr5 62967403 62967481 -89569778 - B1_Mur1 SINE Alu -9 140 67 6 1065 984 285 110 11 chr5 62967711 62968266 -89568993 - Lx8 LINE L1 -1558 5915 5301 6 1065 426 20 0 0 chr5 62968272 62968323 -89568936 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1065 1890 326 85 48 chr5 62968339 62969657 -89567602 + Lx8 LINE L1 5841 7207 -266 6 1065 25 31 0 0 chr5 62969819 62969851 -89567408 + AT_rich Low_complexity Low_complexity 1 32 0 6 1065 445 316 26 26 chr5 62970887 62971004 -89566255 + B4 SINE B4 52 168 -124 6 1065 1792 47 0 21 chr5 62971044 62971285 -89565974 + L1Md_F3 LINE L1 6349 6584 0 6 1065 268 150 40 40 chr5 62972255 62972380 -89564879 + (TCTA)n Simple_repeat Simple_repeat 1 125 0 6 1065 27 0 0 0 chr5 62973536 62973563 -89563696 + AT_rich Low_complexity Low_complexity 1 27 0 6 1065 544 324 78 0 chr5 62975155 62975359 -89561900 - ID_B1 SINE B4 -3 221 2 6 1065 888 117 6 12 chr5 62975373 62975538 -89561721 + (GAA)n Simple_repeat Simple_repeat 2 165 0 6 1065 25 0 0 0 chr5 62976039 62976064 -89561195 + AT_rich Low_complexity Low_complexity 1 25 0 6 1065 393 22 0 0 chr5 62976672 62976718 -89560541 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1065 22 56 0 0 chr5 62976785 62976821 -89560438 + AT_rich Low_complexity Low_complexity 1 36 0 6 1065 251 345 8 25 chr5 62977582 62977701 -89559558 - MamRep605 Unknown Unknown -339 537 421 6 1065 219 145 43 0 chr5 62980062 62980131 -89557128 + (TA)n Simple_repeat Simple_repeat 2 73 0 6 1065 3192 57 12 14 chr5 62981586 62982012 -89555247 - L1Md_F2 LINE L1 -14 6568 6144 6 1065 370 113 56 0 chr5 62982076 62982147 -89555112 - L1_Mus3 LINE L1 0 6638 6564 6 1065 180 152 0 0 chr5 62982540 62982573 -89554686 + (CATAA)n Simple_repeat Simple_repeat 2 34 0 6 1065 233 311 69 15 chr5 62983329 62983531 -89553728 - L1ME2z LINE L1 -31 6413 6201 6 1065 26 30 0 0 chr5 62983535 62983568 -89553691 + AT_rich Low_complexity Low_complexity 1 33 0 6 1065 1577 148 11 14 chr5 62983819 62984100 -89553159 - Lx2A1 LINE L1 -9 6999 6720 6 1065 568 229 32 86 chr5 62984100 62984286 -89552973 - MTD LTR MaLR -6 413 238 6 1065 1679 249 146 36 chr5 62984198 62984727 -89552532 + MTC-int LTR MaLR 574 1160 -98 6 1065 849 191 103 30 chr5 62984738 62985027 -89552232 - MT2A LTR ERVL -2 531 170 6 1065 531 228 121 17 chr5 62985020 62985194 -89552065 - MTD-int LTR MaLR -1055 203 12 6 1065 1085 232 55 0 chr5 62985203 62985457 -89551802 - MTD LTR MaLR 0 419 152 6 1065 3723 217 55 58 chr5 62985470 62985736 -89551523 - Lx7 LINE L1 -114 7582 7331 6 1065 549 44 0 0 chr5 62985736 62985804 -89551455 + (GGA)n Simple_repeat Simple_repeat 3 70 0 6 1065 3723 217 55 58 chr5 62985804 62986562 -89550697 - Lx7 LINE L1 -366 7330 6562 6 1065 2192 189 88 32 chr5 62986569 62987107 -89550152 - RMER16 LTR ERVK 0 533 9 6 1065 1846 242 90 18 chr5 62987107 62987676 -89549583 - Lx7 LINE L1 -1139 6557 5948 6 1065 2063 185 43 42 chr5 62987708 62988215 -89549044 - RLTR31A_Mm LTR ERVK 0 561 1 6 1065 932 158 11 0 chr5 62989292 62989438 -89547821 + polypyrimidine Low_complexity Low_complexity 33 180 0 6 1065 1099 89 0 27 chr5 62989438 62989623 -89547636 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1065 932 158 11 0 chr5 62989623 62989653 -89547606 + polypyrimidine Low_complexity Low_complexity 3 32 0 6 1065 1124 67 5 43 chr5 62989645 62989785 -89547474 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 6 1065 1108 89 6 11 chr5 62989785 62989966 -89547293 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1065 1124 67 5 43 chr5 62989966 62990012 -89547247 + (TTTC)n Simple_repeat Simple_repeat 1 46 0 6 1065 396 209 0 0 chr5 62990012 62990103 -89547156 + CT-rich Low_complexity Low_complexity 1 91 0 6 1065 1902 145 120 15 chr5 62990104 62990462 -89546797 - Lx3A LINE L1 -3 6978 6596 6 1065 1618 113 6 25 chr5 62990635 62990888 -89546371 - Lx3_Mus LINE L1 -390 6619 6358 6 1065 265 256 33 0 chr5 62991931 62992021 -89545238 + (TA)n Simple_repeat Simple_repeat 2 94 0 6 1065 636 14 0 0 chr5 62992282 62992355 -89544904 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1065 23 33 0 0 chr5 62992860 62992890 -89544369 + AT_rich Low_complexity Low_complexity 1 30 0 6 1065 40 67 0 0 chr5 62996046 62996121 -89541138 + AT_rich Low_complexity Low_complexity 1 75 0 6 1065 207 171 11 79 chr5 62996235 62996324 -89540935 + A-rich Low_complexity Low_complexity 3 85 0 6 1065 317 287 39 19 chr5 62996345 62996448 -89540811 - Lx7 LINE L1 -403 7293 7189 6 1065 22 0 0 0 chr5 62996467 62996489 -89540770 + AT_rich Low_complexity Low_complexity 1 22 0 6 1065 183 129 0 0 chr5 62996489 62996520 -89540739 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1065 210 174 22 0 chr5 63000466 63000512 -89536747 - B4 SINE B4 -245 47 1 1 1065 197 283 117 21 chr5 63001507 63001601 -89535658 - L2c LINE L2 -66 3321 3219 2 1065 204 163 0 0 chr5 63001950 63001993 -89535266 + GA-rich Low_complexity Low_complexity 2 44 0 3 1065 1009 133 0 16 chr5 63002027 63002210 -89535049 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1065 1382 191 221 33 chr5 63004571 63005020 -89532239 + RMER16 LTR ERVK 1 533 0 5 1065 24 32 0 0 chr5 63006610 63006641 -89530618 + AT_rich Low_complexity Low_complexity 1 31 0 6 1065 253 0 26 26 chr5 63006961 63006999 -89530260 + (CAA)n Simple_repeat Simple_repeat 2 39 0 7 1065 299 250 204 0 chr5 63007677 63007765 -89529494 - ID_B1 SINE B4 -8 216 111 8 1065 1833 162 89 0 chr5 63007765 63008075 -89529184 + RLTR28B LTR ERVL 1 322 -159 9 1065 728 68 10 0 chr5 63008075 63008178 -89529081 + (TTC)n Simple_repeat Simple_repeat 2 105 0 1 1065 1833 162 89 0 chr5 63008178 63008226 -89529033 + RLTR28B LTR ERVL 323 390 -91 9 1065 387 105 0 0 chr5 63008227 63008284 -89528975 + (GAAAA)n Simple_repeat Simple_repeat 2 58 0 1 1065 393 247 45 0 chr5 63008284 63008373 -89528886 + RLTR28B LTR ERVL 386 478 -3 9 1065 25 0 0 0 chr5 63008500 63008525 -89528734 + AT_rich Low_complexity Low_complexity 1 25 0 1 1065 26 50 0 0 chr5 63008607 63008647 -89528612 + AT_rich Low_complexity Low_complexity 1 40 0 1 1065 188 133 44 0 chr5 63009426 63009471 -89527788 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 1065 197 139 23 0 chr5 63009464 63009507 -89527752 + CT-rich Low_complexity Low_complexity 1 44 0 1 1065 471 279 36 29 chr5 63010088 63010228 -89527031 - B3 SINE B2 -35 181 41 1 1065 334 279 97 42 chr5 63011128 63011557 -89525702 - L1M5 LINE L1 -533 5631 5176 1 1065 2521 62 0 0 chr5 63012015 63012339 -89524920 - L1_Mus2 LINE L1 -424 6142 5819 1 1065 3078 72 2 0 chr5 63012341 63012741 -89524518 + L1_Mus2 LINE L1 6166 6566 0 1 1065 594 222 78 50 chr5 63013335 63013515 -89523744 - B3A SINE B2 -11 187 3 1 1065 435 302 42 0 chr5 63013564 63013683 -89523576 - RSINE1 SINE B4 -40 125 2 2 1065 183 80 0 0 chr5 63015146 63015171 -89522088 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1065 189 121 0 0 chr5 63015171 63015203 -89522056 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 1065 27 73 0 0 chr5 63015476 63015531 -89521728 + AT_rich Low_complexity Low_complexity 1 55 0 2 1065 2208 137 20 39 chr5 63016353 63016762 -89520497 + Lx2 LINE L1 6596 6996 -1 2 1065 260 345 18 9 chr5 63017737 63017851 -89519408 + Lx7 LINE L1 7193 7307 -389 2 1065 315 65 0 0 chr5 63017857 63017903 -89519356 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1065 224 160 0 20 chr5 63017972 63018023 -89519236 + T-rich Low_complexity Low_complexity 4 53 0 2 1065 22 35 0 0 chr5 63018111 63018140 -89519119 + AT_rich Low_complexity Low_complexity 1 29 0 2 1065 525 104 0 0 chr5 63019048 63019125 -89518134 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 1065 22 0 0 0 chr5 63019501 63019523 -89517736 + AT_rich Low_complexity Low_complexity 1 22 0 3 1065 186 43 0 0 chr5 63019633 63019656 -89517603 + (CCA)n Simple_repeat Simple_repeat 1 23 0 3 1065 1551 297 82 11 chr5 63019690 63020248 -89517011 + Lx8 LINE L1 6733 7330 -143 3 1065 890 228 97 16 chr5 63020277 63020546 -89516713 - ORR1C2 LTR MaLR -77 307 6 3 1065 22 35 0 0 chr5 63020622 63020651 -89516608 + AT_rich Low_complexity Low_complexity 1 29 0 3 1065 1033 31 49 12 chr5 63023128 63023291 -89513968 + (TCTA)n Simple_repeat Simple_repeat 1 169 0 3 1065 420 20 0 0 chr5 63023323 63023372 -89513887 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 3 1065 24 0 0 0 chr5 63024625 63024649 -89512610 + AT_rich Low_complexity Low_complexity 1 24 0 3 1065 574 374 20 13 chr5 63025156 63025457 -89511802 + MTE-int LTR MaLR 47 349 -1231 3 1065 207 43 83 21 chr5 63027540 63027588 -89509671 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 3 1065 203 88 29 0 chr5 63028136 63028170 -89509089 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1065 856 240 22 0 chr5 63028420 63028603 -89508656 - B3 SINE B2 -2 214 28 4 1065 629 25 0 12 chr5 63028619 63028699 -89508560 + (GAAA)n Simple_repeat Simple_repeat 1 79 0 4 1065 264 178 27 27 chr5 63029146 63029256 -89508003 + (TA)n Simple_repeat Simple_repeat 2 111 0 4 1065 213 369 0 19 chr5 63029874 63029979 -89507280 - MIRc SINE MIR -122 146 44 4 1065 21 0 0 0 chr5 63031291 63031312 -89505947 + AT_rich Low_complexity Low_complexity 1 21 0 4 1065 360 0 0 0 chr5 63034267 63034307 -89502952 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1065 620 289 14 33 chr5 63034967 63035182 -89502077 - B3 SINE B2 -5 211 1 4 1065 362 39 19 0 chr5 63035459 63035511 -89501748 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1065 24 0 0 0 chr5 63036795 63036819 -89500440 + AT_rich Low_complexity Low_complexity 1 24 0 4 1065 835 329 18 18 chr5 63038826 63039111 -89498148 + B4A SINE B4 6 290 -2 4 1065 407 305 19 31 chr5 63039121 63039450 -89497809 + (CATA)n Simple_repeat Simple_repeat 1 324 0 5 1065 402 21 0 0 chr5 63039473 63039520 -89497739 + (GGGAGA)n Simple_repeat Simple_repeat 3 49 0 5 1065 310 296 39 39 chr5 63039554 63039684 -89497575 - Lx7 LINE L1 -417 7279 7150 5 1065 234 294 45 34 chr5 63039894 63039982 -89497277 + Lx7 LINE L1 7043 7131 -565 5 1065 26 30 0 0 chr5 63040517 63040550 -89496709 + AT_rich Low_complexity Low_complexity 1 33 0 5 1065 25 51 0 0 chr5 63040631 63040670 -89496589 + AT_rich Low_complexity Low_complexity 1 39 0 5 1065 487 302 24 48 chr5 63043013 63043180 -89494079 + RSINE1 SINE B4 3 165 0 5 1065 180 179 0 0 chr5 63043182 63043221 -89494038 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1065 402 57 0 0 chr5 63044526 63044579 -89492680 + (CATA)n Simple_repeat Simple_repeat 2 54 0 5 1066 324 315 31 112 chr5 63046089 63046250 -89491009 + B1F1 SINE Alu 1 148 -1 5 1066 1200 100 50 0 chr5 63047226 63047406 -89489853 - B2_Mm2 SINE B2 -5 190 2 6 1066 1096 163 56 23 chr5 63047415 63047629 -89489630 + URR1A DNA MER1_type 6 226 0 6 1066 234 62 0 0 chr5 63047812 63047844 -89489415 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1066 351 0 0 0 chr5 63049270 63049309 -89487950 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1066 243 0 0 0 chr5 63049999 63050026 -89487233 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1066 746 271 74 67 chr5 63050027 63050296 -89486963 - Lx8 LINE L1 -12 7461 7191 6 1066 529 257 0 9 chr5 63050554 63050660 -89486599 + PB1D9 SINE Alu 6 110 -10 6 1066 276 77 0 0 chr5 63050664 63050703 -89486556 + (CAGAGA)n Simple_repeat Simple_repeat 1 39 0 6 1066 499 333 60 10 chr5 63051581 63051781 -89485478 + B4A SINE B4 70 279 -13 6 1066 303 122 0 0 chr5 63051835 63051884 -89485375 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1066 384 165 0 0 chr5 63051964 63052055 -89485204 + CT-rich Low_complexity Low_complexity 1 91 0 7 1066 608 199 6 96 chr5 63052067 63052223 -89485036 - B1_Mus1 SINE Alu -6 142 1 7 1066 359 259 47 0 chr5 63052365 63052450 -89484809 - B1F SINE Alu -56 93 5 7 1066 6387 45 28 5 chr5 63052654 63053470 -89483789 - L1Md_F3 LINE L1 -2 6582 5748 7 1066 24 53 0 0 chr5 63055428 63055466 -89481793 + AT_rich Low_complexity Low_complexity 1 38 0 7 1066 541 252 0 0 chr5 63055468 63055579 -89481680 - PB1D7 SINE Alu -7 113 3 7 1066 186 43 0 0 chr5 63055804 63055827 -89481432 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1066 1316 220 58 17 chr5 63057010 63057302 -89479957 + MTD LTR MaLR 58 361 -58 7 1066 4153 78 27 5 chr5 63057386 63057941 -89479318 + L1_Mus1 LINE L1 6001 6567 0 7 1066 334 364 67 54 chr5 63058944 63059258 -89478001 + L2b LINE L2 2671 2988 -431 7 1066 197 390 30 10 chr5 63059561 63059662 -89477597 + L2b LINE L2 3264 3366 -9 7 1066 21 71 0 0 chr5 63061271 63061313 -89475946 + AT_rich Low_complexity Low_complexity 1 42 0 8 1066 326 129 0 16 chr5 63061396 63061459 -89475800 + (TAA)n Simple_repeat Simple_repeat 1 62 0 8 1066 248 324 0 0 chr5 63062810 63062884 -89474375 + MER58B DNA MER1_type 175 248 -93 8 1066 1277 50 0 0 chr5 63064859 63065020 -89472239 - L1Md_T LINE L1 0 6582 6422 8 1066 1806 19 0 0 chr5 63065020 63065235 -89472024 + L1Md_T LINE L1 6152 6366 -216 8 1066 261 254 17 0 chr5 63065312 63065371 -89471888 - L2a LINE L2 -2 3424 3365 8 1066 271 26 0 0 chr5 63066393 63066431 -89470828 - L1_Mus1 LINE L1 -587 5980 5943 8 1066 315 191 0 0 chr5 63066571 63066634 -89470625 + A-rich Low_complexity Low_complexity 1 63 0 8 1066 22 0 0 0 chr5 63066839 63066861 -89470398 + AT_rich Low_complexity Low_complexity 1 22 0 8 1066 522 91 0 0 chr5 63069372 63069449 -89467810 + (TG)n Simple_repeat Simple_repeat 2 78 0 8 1066 903 254 14 37 chr5 63070053 63070270 -89466989 + B3 SINE B2 2 213 -3 8 1066 593 183 130 30 chr5 63070812 63070981 -89466278 + B2_Mm2 SINE B2 1 186 -9 9 1066 5615 153 18 2 chr5 63070985 63071895 -89465364 + Lx4A LINE L1 6134 7057 -1 9 1066 1823 146 14 84 chr5 63072641 63073082 -89464177 + RMER17C LTR ERVK 1 410 0 9 1066 254 50 25 0 chr5 63073093 63073133 -89464126 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 9 1066 501 17 0 0 chr5 63073240 63073298 -89463961 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 1066 192 40 0 0 chr5 63073370 63073395 -89463864 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 9 1066 7359 56 3 1 chr5 63073395 63074325 -89462934 + L1Md_F2 LINE L1 5651 6582 0 9 1066 21 0 0 0 chr5 63074397 63074418 -89462841 + AT_rich Low_complexity Low_complexity 1 21 0 9 1066 498 17 0 0 chr5 63075756 63075815 -89461444 + (TC)n Simple_repeat Simple_repeat 2 60 0 9 1066 333 0 0 0 chr5 63075815 63075851 -89461408 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1066 281 243 0 98 chr5 63075877 63075959 -89461300 - ID4_ SINE ID -6 77 4 1 1066 300 53 0 0 chr5 63076741 63076779 -89460480 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1066 964 204 46 5 chr5 63077143 63077360 -89459899 - URR1A DNA MER1_type 0 226 1 1 1066 330 329 112 20 chr5 63078647 63078799 -89458460 - B4A SINE B4 -22 270 105 1 1066 237 132 0 0 chr5 63078931 63078969 -89458290 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 1 1066 272 208 0 10 chr5 63079076 63079173 -89458086 + (TG)n Simple_repeat Simple_repeat 2 97 0 1 1066 195 181 0 40 chr5 63079193 63079268 -89457991 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 1066 280 360 35 28 chr5 63079283 63079301 -89457958 - B4A SINE B4 -144 148 131 1 1066 273 119 0 0 chr5 63079301 63079343 -89457916 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1066 280 360 35 28 chr5 63079343 63079467 -89457792 - B4A SINE B4 -162 130 5 1 1066 537 332 75 46 chr5 63079983 63080289 -89456970 - L4 LINE RTE -592 1437 1123 1 1066 207 0 0 0 chr5 63080664 63080687 -89456572 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1066 285 329 34 96 chr5 63080845 63081023 -89456236 + MIRb SINE MIR 47 213 -55 1 1066 519 17 0 0 chr5 63081951 63082011 -89455248 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1066 315 0 0 0 chr5 63082011 63082045 -89455214 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1066 269 188 0 28 chr5 63082173 63082244 -89455015 + GA-rich Low_complexity Low_complexity 4 72 0 1 1066 299 309 0 0 chr5 63082365 63082433 -89454826 - B3 SINE B2 -147 69 2 1 1066 493 315 47 55 chr5 63082530 63082805 -89454454 - B4A SINE B4 -18 274 2 1 1066 234 241 0 0 chr5 63082854 63082912 -89454347 + GA-rich Low_complexity Low_complexity 1 58 0 1 1066 671 319 60 46 chr5 63082946 63083229 -89454030 + B4A SINE B4 6 292 0 1 1066 195 42 0 0 chr5 63084461 63084485 -89452774 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1066 180 0 0 0 chr5 63084483 63084503 -89452756 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1066 1176 111 35 0 chr5 63085511 63085683 -89451576 + B2_Mm1t SINE B2 2 179 -14 1 1066 369 60 113 0 chr5 63085695 63085754 -89451505 + B2_Mm2 SINE B2 46 115 -83 1 1066 210 260 0 0 chr5 63085810 63085860 -89451399 + (TATG)n Simple_repeat Simple_repeat 4 53 0 1 1066 1241 77 0 5 chr5 63086135 63086583 -89450676 + (CA)n Simple_repeat Simple_repeat 1 445 0 1 1066 30 45 0 0 chr5 63086632 63086676 -89450583 + AT_rich Low_complexity Low_complexity 1 44 0 1 1066 983 78 0 0 chr5 63086676 63086804 -89450455 + B1_Mus1 SINE Alu 16 143 -5 1 1066 21 0 0 0 chr5 63086812 63086833 -89450426 + AT_rich Low_complexity Low_complexity 1 21 0 1 1066 450 111 25 0 chr5 63087002 63087083 -89450176 + L1Md_F2 LINE L1 6498 6580 -2 1 1066 198 176 0 0 chr5 63087087 63087138 -89450121 + A-rich Low_complexity Low_complexity 1 51 0 1 1066 328 229 61 20 chr5 63087138 63087236 -89450023 + PB1D10 SINE Alu 15 116 -1 1 1066 402 157 0 0 chr5 63088560 63088643 -89448616 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 1066 959 274 64 36 chr5 63088767 63089126 -89448133 + ORR1D2 LTR MaLR 2 370 0 1 1066 295 334 57 68 chr5 63089985 63090330 -89446929 + ORR1E LTR MaLR 9 363 -16 1 1066 3209 121 35 18 chr5 63090414 63090928 -89446331 - Lx LINE L1 -2 6652 6130 1 1066 198 0 0 0 chr5 63091942 63091964 -89445295 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1 1066 22 35 0 0 chr5 63092151 63092180 -89445079 + AT_rich Low_complexity Low_complexity 1 29 0 1 1066 287 266 359 0 chr5 63092796 63092980 -89444279 - Lx8 LINE L1 -540 6933 6684 1 1066 319 382 34 6 chr5 63093109 63093288 -89443971 + Lx8 LINE L1 7142 7325 -148 1 1066 423 0 0 0 chr5 63093300 63093347 -89443912 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1066 396 0 0 0 chr5 63093613 63093657 -89443602 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1066 489 259 0 0 chr5 63094901 63095009 -89442250 - Lx9 LINE L1 -1070 6574 6467 1 1066 2103 276 74 30 chr5 63095023 63095863 -89441396 + Lx9 LINE L1 6618 7494 -150 1 1066 258 179 0 0 chr5 63095870 63095926 -89441333 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1066 303 51 0 0 chr5 63095928 63095967 -89441292 - HAL1-3A_ME LINE L1 -846 2012 1974 1 1066 245 288 24 105 chr5 63097637 63097761 -89439498 + MT2B LTR ERVL 141 254 -347 1 1066 255 380 9 9 chr5 63097666 63097775 -89439484 + ID_B1 SINE B4 85 193 -31 1 1066 396 344 96 57 chr5 63099043 63099376 -89437883 + ORR1E LTR MaLR 3 348 -11 1 1066 536 266 26 37 chr5 63099371 63099408 -89437851 - CYRA11_Mm Unknown Y-chromosome -267 350 206 1 1066 916 126 0 14 chr5 63099408 63099553 -89437706 + URR1B DNA MER1_type 83 225 0 1 1066 579 305 26 0 chr5 63101050 63101201 -89436058 - RSINE1 SINE B4 -8 157 3 1 1066 2078 88 24 54 chr5 63102655 63102991 -89434268 + Lx LINE L1 6329 6654 0 1 1066 2780 71 53 0 chr5 63103546 63103926 -89433333 - MTB LTR MaLR 0 400 1 1 1066 759 275 63 8 chr5 63104656 63104894 -89432365 - MER2 DNA MER2_type -6 339 89 1 1066 1036 92 43 0 chr5 63105613 63105754 -89431505 + B1_Mus1 SINE Alu 2 148 0 1 1066 29 0 0 0 chr5 63105754 63105783 -89431476 + AT_rich Low_complexity Low_complexity 1 29 0 1 1066 249 273 0 29 chr5 63108320 63108388 -89428871 + (TATG)n Simple_repeat Simple_repeat 3 68 0 1 1066 498 355 31 40 chr5 63108390 63108613 -89428646 - B4A SINE B4 -6 286 66 1 1066 24 0 0 0 chr5 63109569 63109593 -89427666 + AT_rich Low_complexity Low_complexity 1 24 0 1 1066 720 370 18 14 chr5 63109665 63109950 -89427309 + B4A SINE B4 1 286 -6 1 1066 202 301 3 20 chr5 63110169 63110270 -89426989 - MIR SINE MIR -29 239 138 1 1066 703 207 7 27 chr5 63110921 63111070 -89426189 - B1_Mur2 SINE Alu -3 146 1 1 1066 294 107 96 10 chr5 63111847 63111951 -89425308 + (TA)n Simple_repeat Simple_repeat 2 114 0 1 1066 828 265 116 51 chr5 63111953 63112383 -89424876 - L1MA6 LINE L1 -21 6279 5822 1 1066 610 308 174 0 chr5 63112398 63112645 -89424614 - B4A SINE B4 -2 290 1 1 1066 449 254 40 48 chr5 63112759 63112883 -89424376 + B3 SINE B2 3 125 -91 1 1066 439 271 10 0 chr5 63113068 63113164 -89424095 + ID_B1 SINE B4 123 219 -5 1 1066 4447 70 14 14 chr5 63113699 63114266 -89422993 + L1Md_F2 LINE L1 6016 6582 0 1 1066 243 0 0 0 chr5 63116207 63116234 -89421025 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1066 255 308 28 19 chr5 63116385 63116491 -89420768 - Lx9 LINE L1 -208 7436 7330 1 1066 1798 309 63 23 chr5 63116534 63117093 -89420166 - Lx9 LINE L1 -408 7236 6669 1 1066 581 40 13 0 chr5 63117093 63117169 -89420090 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1066 1798 309 63 23 chr5 63117169 63117355 -89419904 - Lx9 LINE L1 -976 6668 6462 1 1066 363 256 0 13 chr5 63117394 63117473 -89419786 - ID4_ SINE ID 0 83 6 1 1066 344 336 52 17 chr5 63117523 63117638 -89419621 - B1F2 SINE Alu -27 122 4 1 1066 496 361 10 15 chr5 63118209 63118406 -89418853 + MER58A DNA MER1_type 16 211 -13 1 1066 1203 218 29 8 chr5 63119580 63119825 -89417434 + Lx3C LINE L1 6657 6906 -70 1 1066 372 84 0 0 chr5 63120590 63120640 -89416619 + L1Md_F2 LINE L1 5531 5586 -297 1 1066 8734 38 0 13 chr5 63120641 63121649 -89415610 + L1Md_F2 LINE L1 5588 6582 0 1 1066 435 113 0 0 chr5 63122286 63122357 -89414902 + (CATA)n Simple_repeat Simple_repeat 4 74 0 1 1066 373 96 0 0 chr5 63122358 63122410 -89414849 + HAL1-3A_ME LINE L1 1976 2027 -831 1 1066 1172 72 0 0 chr5 63123526 63123665 -89413594 + B1_Mm SINE Alu 1 139 -8 1 1066 355 320 145 36 chr5 63126871 63127286 -89409973 + L1M5 LINE L1 3122 3581 -2565 1 1066 21 0 0 0 chr5 63127418 63127439 -89409820 + AT_rich Low_complexity Low_complexity 1 21 0 1 1066 362 74 0 18 chr5 63127704 63127759 -89409500 + (CATAT)n Simple_repeat Simple_repeat 2 55 0 1 1066 211 312 20 40 chr5 63127771 63127871 -89409388 - B1F1 SINE Alu -43 106 9 1 1066 405 295 137 52 chr5 63127876 63128420 -89408839 + L1M5 LINE L1 4261 4849 -1297 1 1066 3781 241 104 23 chr5 63128456 63129694 -89407565 + Lx9 LINE L1 5773 7110 -534 1 1066 650 128 69 0 chr5 63129698 63129800 -89407459 - RLTR15 LTR ERVK 0 359 251 1 1066 1233 211 24 34 chr5 63129800 63130094 -89407165 + Lx5 LINE L1 6760 7050 0 1 1066 495 232 99 0 chr5 63130083 63130225 -89407034 + Lx9 LINE L1 7319 7474 -170 1 1066 685 254 22 17 chr5 63130268 63130448 -89406811 + B3A SINE B2 2 182 -16 1 1066 255 125 0 0 chr5 63130450 63130490 -89406769 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1066 22 0 0 0 chr5 63131680 63131702 -89405557 + AT_rich Low_complexity Low_complexity 1 22 0 1 1066 297 75 0 0 chr5 63132093 63132133 -89405126 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1066 279 278 31 10 chr5 63132207 63132305 -89404954 + PB1D10 SINE Alu 1 100 -17 1 1066 1158 50 29 21 chr5 63132693 63132934 -89404325 + (TG)n Simple_repeat Simple_repeat 1 243 0 1 1066 604 292 98 24 chr5 63133022 63133194 -89404065 - B4A SINE B4 -28 264 84 1 1066 372 94 0 0 chr5 63133194 63133247 -89404012 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1066 604 292 98 24 chr5 63133247 63133320 -89403939 - B4A SINE B4 -209 83 2 1 1066 2017 153 48 3 chr5 63133926 63134241 -89403018 + ORR1A4 LTR MaLR 1 329 0 1 1066 399 78 0 59 chr5 63134329 63134397 -89402862 - L1Md_F3 LINE L1 -6 6578 6515 1 1066 496 306 8 0 chr5 63134418 63134539 -89402720 + RSINE1 SINE B4 12 133 -32 1 1066 403 323 50 19 chr5 63135090 63135251 -89402008 + ID_B1 SINE B4 58 223 -1 1 1066 405 0 0 0 chr5 63135340 63135385 -89401874 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1066 468 51 0 0 chr5 63135483 63135542 -89401717 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1066 376 239 40 10 chr5 63135768 63135879 -89401380 - B1F SINE Alu -34 115 2 1 1066 533 280 23 23 chr5 63136685 63136813 -89400446 - ID_B1 SINE B4 -96 128 1 2 1066 331 251 131 116 chr5 63137038 63137236 -89400023 + MER34 LTR ERV1 35 235 -307 2 1066 1984 176 131 22 chr5 63137726 63138178 -89399081 + Lx9 LINE L1 7122 7622 -22 2 1066 196 349 0 0 chr5 63139578 63139641 -89397618 - MIRm SINE MIR -8 268 206 2 1066 36 53 0 0 chr5 63141058 63141115 -89396144 + AT_rich Low_complexity Low_complexity 1 57 0 2 1066 366 23 0 0 chr5 63141119 63141162 -89396097 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1066 287 304 12 12 chr5 63141167 63141247 -89396012 - ID4_ SINE ID -2 81 2 2 1066 3183 64 10 8 chr5 63141544 63141939 -89395320 - MTA_Mm LTR MaLR 0 396 1 2 1066 259 306 26 77 chr5 63142641 63142758 -89394501 - PB1 SINE Alu -12 115 5 2 1066 23 0 0 0 chr5 63143222 63143245 -89394014 + AT_rich Low_complexity Low_complexity 1 23 0 2 1066 521 293 108 48 chr5 63143659 63143974 -89393285 + MLT1A LTR MaLR 26 359 -15 2 1066 221 75 0 24 chr5 63144622 63144663 -89392596 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2 1066 1201 82 0 26 chr5 63144663 63144814 -89392445 - B1_Mus1 SINE Alu 0 148 2 2 1066 1400 86 43 0 chr5 63145372 63145558 -89391701 + B2_Mm2 SINE B2 2 195 0 2 1066 267 103 0 0 chr5 63145558 63145597 -89391662 + (GAAA)n Simple_repeat Simple_repeat 4 42 0 2 1066 321 117 0 0 chr5 63146105 63146165 -89391094 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1066 491 257 171 69 chr5 63146457 63146720 -89390539 - MLT1A0 LTR MaLR -3 405 75 2 1066 442 340 31 45 chr5 63146831 63147053 -89390206 + MIR SINE MIR 8 226 -36 2 1066 214 299 137 47 chr5 63147343 63147554 -89389705 + L2 LINE L2 2641 2870 -549 2 1066 778 154 22 0 chr5 63149498 63149634 -89387625 - URR1A DNA MER1_type -6 220 82 2 1066 551 295 42 46 chr5 63150234 63150451 -89386808 + B4A SINE B4 1 216 -76 2 1066 239 317 12 0 chr5 63150586 63150668 -89386591 + (CATA)n Simple_repeat Simple_repeat 4 86 0 2 1066 781 286 10 21 chr5 63150689 63150978 -89386281 + L1MB2 LINE L1 5852 6137 -34 2 1066 610 113 9 9 chr5 63151216 63151323 -89385936 + (TC)n Simple_repeat Simple_repeat 2 108 0 2 1066 219 36 0 0 chr5 63151354 63151382 -89385877 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1066 315 344 14 67 chr5 63151430 63151657 -89385602 - RSINE1 SINE B4 -82 210 1 2 1066 3361 58 7 37 chr5 63152720 63153152 -89384107 + L1Md_F2 LINE L1 6163 6581 -1 2 1066 180 0 0 0 chr5 63153605 63153625 -89383634 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1066 180 0 0 0 chr5 63154788 63154808 -89382451 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1066 661 231 0 44 chr5 63155153 63155289 -89381970 - RSINE1 SINE B4 0 165 36 2 1066 216 0 0 0 chr5 63155929 63155953 -89381306 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1066 26 50 0 0 chr5 63157486 63157526 -89379733 + GC_rich Low_complexity Low_complexity 1 40 0 2 1066 249 136 46 69 chr5 63158564 63158651 -89378608 + T-rich Low_complexity Low_complexity 3 87 0 2 1066 189 0 0 0 chr5 63158867 63158888 -89378371 + (G)n Simple_repeat Simple_repeat 1 21 0 2 1066 208 331 82 34 chr5 63159265 63159412 -89377847 - MIRb SINE MIR -6 262 109 2 1066 194 305 116 66 chr5 63159814 63160056 -89377203 - MIR SINE MIR -7 255 2 2 1066 213 65 0 0 chr5 63160439 63160470 -89376789 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1066 237 165 152 0 chr5 63160552 63160631 -89376628 - Kanga2_a DNA Tc2 -201 687 597 2 1066 704 133 8 0 chr5 63160863 63160983 -89376276 + (TC)n Simple_repeat Simple_repeat 2 122 0 2 1066 943 236 231 7 chr5 63161044 63161339 -89375920 + MTD LTR MaLR 20 380 -39 2 1066 2000 158 12 56 chr5 63161922 63162264 -89374995 + ORR1A2 LTR MaLR 1 327 0 2 1066 329 263 49 70 chr5 63162326 63162469 -89374790 + L1MA4 LINE L1 5769 5927 -373 2 1066 377 113 0 40 chr5 63162561 63162635 -89374624 + T-rich Low_complexity Low_complexity 1 71 0 2 1066 875 94 150 0 chr5 63162635 63162762 -89374497 - B1_Mus1 SINE Alu 0 148 3 2 1066 26 0 0 0 chr5 63162950 63162976 -89374283 + AT_rich Low_complexity Low_complexity 1 26 0 2 1066 250 277 47 13 chr5 63163531 63163650 -89373609 + Kanga1c DNA Tc2 14 146 -583 2 1066 4715 14 0 0 chr5 63163814 63164307 -89372952 - MT2_Mm LTR ERVL 0 493 1 2 1066 285 0 27 0 chr5 63164307 63164344 -89372915 - MERVL-int LTR ERVL 0 5485 5448 2 1066 297 183 14 40 chr5 63164344 63164418 -89372841 - ORR1A3-int LTR MaLR -1323 640 569 2 1066 16290 31 1 0 chr5 63164419 63166275 -89370984 - MERVL-int LTR ERVL -113 5372 3516 2 1066 2878 30 0 0 chr5 63166265 63166594 -89370665 - MERVL-int LTR ERVL -5156 329 1 2 1066 4662 14 0 10 chr5 63166594 63167092 -89370167 - MT2_Mm LTR ERVL 0 493 1 2 1066 313 255 105 65 chr5 63167726 63167901 -89369358 + Charlie8 DNA MER1_type 3 173 -2255 2 1066 196 434 28 9 chr5 63168282 63168389 -89368870 - L2b LINE L2 -50 3325 3217 2 1066 273 109 0 0 chr5 63168429 63168475 -89368784 + (GA)n Simple_repeat Simple_repeat 1 46 0 2 1066 369 43 0 0 chr5 63169584 63169631 -89367628 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1066 208 351 0 21 chr5 63171323 63171419 -89365840 - MIR SINE MIR -63 145 52 2 1066 325 314 34 54 chr5 63172382 63172530 -89364729 - MER103 DNA DNA -21 145 1 2 1066 783 266 62 0 chr5 63172569 63172746 -89364513 + B3 SINE B2 25 212 -4 2 1066 607 121 26 0 chr5 63172925 63173041 -89364218 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 2 1066 323 232 10 69 chr5 63173049 63173151 -89364108 - PB1D10 SINE Alu -17 100 5 2 1066 1017 104 0 0 chr5 63173170 63173304 -89363955 + B1_Mus1 SINE Alu 3 136 -12 2 1066 333 0 0 0 chr5 63173306 63173343 -89363916 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2 1066 21 57 0 0 chr5 63173539 63173574 -89363685 + AT_rich Low_complexity Low_complexity 1 35 0 2 1066 1191 48 0 7 chr5 63173670 63173818 -89363441 - B1_Mm SINE Alu 0 147 1 2 1066 977 247 12 29 chr5 63173879 63174125 -89363134 + Lx7 LINE L1 6096 6337 -1359 2 1066 702 286 56 57 chr5 63174129 63174439 -89362820 + MT2B LTR ERVL 145 546 -55 2 1066 216 0 0 0 chr5 63174439 63174463 -89362796 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 1066 406 296 156 54 chr5 63174463 63174505 -89362754 + MT2B LTR ERVL 492 533 0 2 1066 578 157 26 44 chr5 63174505 63174618 -89362641 + MERVL_2A-int LTR ERVL 1 111 -5650 2 1066 1944 140 7 0 chr5 63174856 63175163 -89362096 - ORR1A2 LTR MaLR -8 319 11 2 1066 644 304 116 62 chr5 63175194 63175531 -89361728 + MLT1A0 LTR MaLR 1 355 -10 2 1066 304 360 78 24 chr5 63175561 63175788 -89361471 - MLT1J LTR MaLR -159 289 52 2 1066 447 251 66 16 chr5 63176315 63176465 -89360794 + Lx7 LINE L1 5643 5799 -1251 2 1067 2867 76 25 2 chr5 63176739 63177164 -89360095 + L1Md_F2 LINE L1 6178 6582 0 2 1067 693 230 145 29 chr5 63177166 63177428 -89359831 - RMER2 LTR ERV1 -241 326 1 2 1067 3112 293 65 43 chr5 63177766 63178951 -89358308 + Lx8 LINE L1 6200 7410 -63 2 1067 583 222 0 0 chr5 63180588 63180696 -89356563 - Lx6 LINE L1 -88 7372 7265 2 1067 326 209 35 0 chr5 63180702 63180788 -89356471 + Lx6 LINE L1 7370 7458 -2 2 1067 432 0 0 0 chr5 63181964 63182012 -89355247 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1067 301 342 69 59 chr5 63182305 63182507 -89354752 - MLT2E LTR ERVL -304 324 121 2 1067 729 319 97 23 chr5 63182506 63182805 -89354454 + ORR1E LTR MaLR 37 357 -2 2 1067 255 293 0 0 chr5 63183043 63183101 -89354158 + (TATG)n Simple_repeat Simple_repeat 2 59 0 2 1067 216 367 51 70 chr5 63183226 63183248 -89354011 + B4A SINE B4 66 85 -207 2 1067 2126 175 156 108 chr5 63183248 63183831 -89353428 - RMER19C LTR ERVK 0 611 1 2 1067 560 297 2 3 chr5 63183831 63183971 -89353288 + ID_B1 SINE B4 86 222 -2 2 1067 294 240 0 103 chr5 63184912 63185019 -89352240 + ID4 SINE ID 7 102 -50 2 1067 411 21 0 0 chr5 63185895 63185943 -89351316 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1067 405 0 0 0 chr5 63185951 63185996 -89351263 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1067 1883 162 7 0 chr5 63186798 63187107 -89350152 - L1_Mur1 LINE L1 -34 5852 5542 2 1067 896 146 0 102 chr5 63187106 63187225 -89350034 + L1_Mur1 LINE L1 5367 5485 -401 2 1067 1713 84 4 16 chr5 63187225 63187479 -89349780 + L1_Mus2 LINE L1 6315 6565 -1 2 1067 896 146 0 102 chr5 63187479 63187535 -89349724 + L1_Mur1 LINE L1 5486 5524 -362 2 1067 4570 171 85 35 chr5 63188140 63189156 -89348103 + Lx2B LINE L1 5934 6999 -1 2 1067 5447 135 55 2 chr5 63190195 63191081 -89346178 - Lx LINE L1 -7 6647 5715 2 1067 1047 140 6 0 chr5 63191092 63191263 -89345996 + Lx LINE L1 5544 5715 -168 2 1067 360 0 0 0 chr5 63191402 63191442 -89345817 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1067 261 222 0 0 chr5 63191442 63191505 -89345754 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1067 375 78 0 0 chr5 63191550 63191601 -89345658 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2 1067 369 109 18 0 chr5 63191649 63191704 -89345555 - tRNA-Phe-TTY tRNA tRNA -20 56 1 2 1067 2471 76 3 0 chr5 63192909 63193238 -89344021 + L1_Mus1 LINE L1 6238 6567 0 2 1067 29 47 0 0 chr5 63194860 63194903 -89342356 + AT_rich Low_complexity Low_complexity 1 43 0 2 1067 561 306 193 65 chr5 63195452 63195679 -89341580 - MER90a LTR ERV1 -2 612 357 2 1067 271 238 0 140 chr5 63195679 63195772 -89341487 - ID4 SINE ID -1 82 3 2 1067 561 306 193 65 chr5 63195772 63196083 -89341176 - MER90a LTR ERV1 -258 356 5 2 1067 528 16 0 0 chr5 63196179 63196240 -89341019 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1067 249 33 0 0 chr5 63196240 63196269 -89340990 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1067 1191 41 7 0 chr5 63196562 63196707 -89340552 + B1_Mus2 SINE Alu 2 147 0 2 1067 386 328 111 96 chr5 63197051 63197581 -89339678 - HAL1 LINE L1 -1244 1263 726 2 1067 318 204 263 9 chr5 63197749 63197863 -89339396 + Lx7 LINE L1 7550 7692 -4 2 1067 21 0 0 0 chr5 63198705 63198726 -89338533 + AT_rich Low_complexity Low_complexity 1 21 0 2 1067 1263 76 0 0 chr5 63198773 63198945 -89338314 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 2 1067 21 36 0 0 chr5 63199030 63199058 -89338201 + AT_rich Low_complexity Low_complexity 1 28 0 3 1067 3139 174 84 11 chr5 63199658 63200298 -89336961 + RMER6C LTR ERVK 4 690 0 3 1067 318 26 0 0 chr5 63201090 63201129 -89336130 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1067 21 36 0 0 chr5 63201284 63201312 -89335947 + AT_rich Low_complexity Low_complexity 1 28 0 3 1067 316 241 78 151 chr5 63201385 63201551 -89335708 - Lx9 LINE L1 -167 7477 7324 3 1067 22 0 0 0 chr5 63202520 63202542 -89334717 + AT_rich Low_complexity Low_complexity 1 22 0 3 1067 226 304 100 12 chr5 63204913 63204993 -89332266 + LTR34 LTR ERV1 323 409 -290 3 1067 549 253 105 21 chr5 63205704 63205894 -89331365 - MLT1A0 LTR MaLR 0 365 160 3 1067 32 85 0 25 chr5 63206075 63206196 -89331063 + AT_rich Low_complexity Low_complexity 1 118 0 3 1067 205 111 21 43 chr5 63206604 63206651 -89330608 + T-rich Low_complexity Low_complexity 5 50 0 3 1067 761 67 0 0 chr5 63209006 63209110 -89328149 - B1_Mus2 SINE Alu 0 147 44 3 1067 328 342 82 0 chr5 63209534 63209692 -89327567 - MIR SINE MIR -72 190 20 3 1067 200 128 26 0 chr5 63212996 63213035 -89324224 + T-rich Low_complexity Low_complexity 3 42 0 3 1067 370 265 83 8 chr5 63213815 63213948 -89323311 - Lx5 LINE L1 -8 7042 6900 3 1067 5423 208 33 17 chr5 63213939 63215079 -89322180 - Lx5 LINE L1 -53 6997 5839 3 1067 3108 155 30 35 chr5 63215075 63215682 -89321577 - L1_Mur2 LINE L1 -1615 4262 3659 3 1067 447 244 36 0 chr5 63215675 63215791 -89321468 - L1_Mur2 LINE L1 -6023 689 569 3 1067 3322 213 19 38 chr5 63215816 63216513 -89320746 - L1_Mur2 LINE L1 -3813 2064 1383 3 1067 3393 43 0 0 chr5 63216513 63216909 -89320350 - MTA_Mm LTR MaLR 0 396 1 3 1067 3322 208 21 28 chr5 63216909 63217419 -89319840 - L1_Mur2 LINE L1 -4495 1382 874 3 1067 432 0 0 0 chr5 63217419 63217467 -89319792 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1067 288 70 0 0 chr5 63218005 63218048 -89319211 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1067 1104 95 0 0 chr5 63218736 63218884 -89318375 + B1_Mus1 SINE Alu 1 148 0 3 1067 25 0 0 0 chr5 63218884 63218909 -89318350 + AT_rich Low_complexity Low_complexity 1 25 0 3 1067 401 318 139 27 chr5 63219668 63219998 -89317261 - L1MEd LINE L1 -5191 928 562 3 1067 22 35 0 0 chr5 63220260 63220289 -89316970 + AT_rich Low_complexity Low_complexity 1 29 0 3 1067 369 162 0 0 chr5 63220757 63220825 -89316434 + CT-rich Low_complexity Low_complexity 1 68 0 3 1067 23 54 0 0 chr5 63221199 63221236 -89316023 + AT_rich Low_complexity Low_complexity 1 37 0 3 1067 471 35 0 0 chr5 63221609 63221666 -89315593 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 3 1067 264 59 0 0 chr5 63221702 63221736 -89315523 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3 1067 550 209 73 0 chr5 63222187 63222297 -89314962 + B3 SINE B2 13 130 -86 3 1067 1105 239 182 20 chr5 63222551 63222897 -89314362 - MTC LTR MaLR -8 413 12 3 1067 1651 150 43 7 chr5 63223277 63223553 -89313706 + L1VL4 LINE L1 1 286 -6016 3 1067 8657 86 26 1 chr5 63223551 63224828 -89312431 + MusHAL1 LINE L1 163 1471 -1241 3 1067 1947 161 8 26 chr5 63224828 63225211 -89312048 + Lx LINE L1 4926 5301 -585 3 1067 2461 65 62 0 chr5 63225193 63225533 -89311726 - L1_Mus1 LINE L1 -560 6006 5646 3 1067 4342 84 7 0 chr5 63225533 63226115 -89311144 + L1_Mus1 LINE L1 5982 6567 0 3 1067 482 160 48 8 chr5 63226137 63226263 -89310996 + L1_Mur3 LINE L1 5238 5368 -512 3 1067 2073 92 6 35 chr5 63226280 63226596 -89310663 - IAPLTR2b LTR ERVK -20 307 1 3 1067 6359 160 4 3 chr5 63226596 63227881 -89309378 + Lx LINE L1 5368 6654 0 3 1067 384 299 94 0 chr5 63227984 63228101 -89309158 - B1F1 SINE Alu -8 141 14 3 1067 297 128 0 0 chr5 63228174 63228221 -89309038 + (TATG)n Simple_repeat Simple_repeat 4 50 0 3 1067 212 122 41 0 chr5 63229234 63229283 -89307976 + (CAGAGA)n Simple_repeat Simple_repeat 3 53 0 3 1067 194 351 28 92 chr5 63229821 63229962 -89307297 - MIR SINE MIR -70 192 61 3 1067 230 348 120 21 chr5 63231168 63231359 -89305900 - LTR16A1 LTR ERVL 0 456 247 3 1067 380 71 18 0 chr5 63232403 63232459 -89304800 + (TTTTC)n Simple_repeat Simple_repeat 5 61 0 3 1067 449 331 56 0 chr5 63232461 63232603 -89304656 - B3A SINE B2 -39 159 10 3 1067 587 269 0 2 chr5 63232674 63232812 -89304447 - B1F2 SINE Alu -6 143 8 3 1067 244 310 46 0 chr5 63233371 63233458 -89303801 + PB1D10 SINE Alu 5 95 -22 3 1067 883 291 32 32 chr5 63233510 63233794 -89303465 + B4A SINE B4 5 288 -4 3 1067 345 317 84 7 chr5 63234683 63234826 -89302433 + Tigger5 DNA MER2_type 1 154 -2252 3 1067 692 193 21 0 chr5 63235152 63235297 -89301962 - B1_Mur3 SINE Alu 0 149 2 3 1067 237 65 0 0 chr5 63236741 63236772 -89300487 + (TTCTCC)n Simple_repeat Simple_repeat 3 33 0 3 1067 23 33 0 0 chr5 63238287 63238317 -89298942 + AT_rich Low_complexity Low_complexity 1 30 0 3 1067 253 366 20 66 chr5 63239459 63239655 -89297604 - MIRb SINE MIR -10 258 72 3 1067 777 209 7 0 chr5 63240012 63240160 -89297099 + B1_Mur4 SINE Alu 1 149 -1 3 1067 441 0 0 0 chr5 63240281 63240330 -89296929 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1067 607 268 0 0 chr5 63240342 63240469 -89296790 - RSINE1 SINE B4 -36 129 3 3 1067 355 307 110 0 chr5 63241908 63242035 -89295224 - ID_B1 SINE B4 -4 220 80 3 1067 292 288 93 20 chr5 63242690 63242872 -89294387 - MIRb SINE MIR -48 220 22 3 1067 1239 69 0 2 chr5 63243295 63243705 -89293554 + (TG)n Simple_repeat Simple_repeat 1 408 0 3 1067 353 250 28 0 chr5 63243832 63243904 -89293355 + ID4_ SINE ID 4 77 -6 3 1067 269 135 19 0 chr5 63245202 63245254 -89292005 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1067 318 292 9 54 chr5 63245372 63245484 -89291775 - Lx8 LINE L1 -227 7246 7140 3 1067 802 309 74 65 chr5 63246659 63247026 -89290233 - MTEa LTR MaLR -9 370 1 3 1067 987 152 171 40 chr5 63247067 63247266 -89289993 + URR1B DNA MER1_type 1 225 0 3 1067 194 296 111 0 chr5 63247276 63247357 -89289902 + L2a LINE L2 2792 2881 -538 3 1067 4205 115 2 5 chr5 63247387 63247990 -89289269 + MT2B LTR ERVL 1 601 0 3 1067 584 215 57 10 chr5 63248077 63248230 -89289029 - ORR1A4 LTR MaLR -174 200 1 3 1067 404 320 94 67 chr5 63248230 63248528 -89288731 - MER44A DNA MER2_type -33 306 1 3 1067 243 338 103 84 chr5 63248667 63249035 -89288224 + L2a LINE L2 3049 3423 -3 3 1067 225 269 98 49 chr5 63250261 63250425 -89286834 + Lx8 LINE L1 7294 7465 -8 3 1067 22 0 0 0 chr5 63250523 63250545 -89286714 + AT_rich Low_complexity Low_complexity 1 22 0 3 1067 189 74 0 0 chr5 63250557 63250584 -89286675 + (TATG)n Simple_repeat Simple_repeat 2 28 0 3 1067 2003 229 5 15 chr5 63250785 63251213 -89286046 + Lx6 LINE L1 6876 7559 -137 3 1067 232 286 0 0 chr5 63251271 63251334 -89285925 + Lx7 LINE L1 7193 7255 -441 3 1067 34 42 0 0 chr5 63251504 63251552 -89285707 + AT_rich Low_complexity Low_complexity 1 48 0 3 1067 247 96 0 37 chr5 63251968 63252022 -89285237 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 3 1067 1098 76 7 0 chr5 63252022 63252167 -89285092 - B1_Mus2 SINE Alu 0 147 2 3 1067 5691 230 82 26 chr5 63253791 63254130 -89283129 - Lx7 LINE L1 -8 7688 7329 3 1067 651 26 0 0 chr5 63254130 63254207 -89283052 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1067 5691 230 82 26 chr5 63254207 63255302 -89281957 - Lx7 LINE L1 -368 7328 6179 3 1067 414 0 0 0 chr5 63255302 63255348 -89281911 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1067 5691 230 82 26 chr5 63255348 63255407 -89281852 - Lx7 LINE L1 -1518 6178 6111 3 1067 2682 200 25 66 chr5 63255415 63256003 -89281256 - RMER19C LTR ERVK -47 564 1 3 1067 1349 219 69 90 chr5 63256006 63256657 -89280602 - Lx7 LINE L1 -1588 6108 5460 3 1067 549 0 0 0 chr5 63256659 63256720 -89280539 + (TC)n Simple_repeat Simple_repeat 2 62 0 3 1067 1506 221 40 0 chr5 63256732 63257058 -89280201 + RMER15 LTR ERVL 234 572 -3 3 1067 3375 83 27 2 chr5 63257082 63257627 -89279632 - Lx3A LINE L1 -922 6059 5507 3 1067 198 103 0 0 chr5 63258277 63258306 -89278953 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1067 247 214 32 63 chr5 63258662 63258757 -89278502 - L1MC5 LINE L1 -168 7793 7702 3 1067 1504 249 8 23 chr5 63258960 63259313 -89277946 - Lx6 LINE L1 -1 7459 7112 3 1067 861 204 0 5 chr5 63259997 63260189 -89277070 + L1Md_F LINE L1 47 237 -6282 3 1067 36288 54 12 3 chr5 63260220 63265692 -89271567 + L1Md_T LINE L1 99 5586 -297 3 1067 8047 54 0 0 chr5 63265692 63266687 -89270572 + L1Md_T LINE L1 5587 6581 -1 3 1067 278 300 106 7 chr5 63267127 63267268 -89269991 + MER113 DNA MER1_type 191 345 -176 3 1067 197 380 116 16 chr5 63267328 63267518 -89269741 - MIRb SINE MIR -20 248 40 3 1067 930 136 65 0 chr5 63267584 63267739 -89269520 + B2_Mm2 SINE B2 1 165 -30 3 1067 189 324 14 56 chr5 63268025 63268097 -89269162 + MIR SINE MIR 36 104 -104 3 1067 723 255 51 143 chr5 63268418 63268830 -89268429 - ORR1D1 LTR MaLR 0 374 1 3 1067 618 14 0 0 chr5 63269990 63270061 -89267198 + (TTTC)n Simple_repeat Simple_repeat 4 74 0 3 1067 286 22 0 0 chr5 63270419 63270465 -89266794 + L1_Mus2 LINE L1 6473 6518 -48 3 1067 397 266 47 32 chr5 63271216 63271406 -89265853 + Lx9 LINE L1 7452 7644 0 3 1067 501 333 28 38 chr5 63271661 63271873 -89265386 + B3A SINE B2 1 210 -6 3 1067 272 278 52 0 chr5 63272704 63272801 -89264458 - L1MD LINE L1 -570 5763 5662 3 1067 384 59 0 0 chr5 63273058 63273109 -89264150 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 3 1067 238 132 0 0 chr5 63273965 63274003 -89263256 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 3 1067 595 294 92 5 chr5 63275301 63275496 -89261763 + B3 SINE B2 5 216 0 3 1067 24 32 0 0 chr5 63275502 63275533 -89261726 + AT_rich Low_complexity Low_complexity 1 31 0 3 1067 256 268 102 149 chr5 63275545 63275760 -89261499 - ORR1E LTR MaLR -100 259 55 4 1067 22 0 0 0 chr5 63276007 63276029 -89261230 + AT_rich Low_complexity Low_complexity 1 22 0 4 1067 303 28 0 0 chr5 63276406 63276442 -89260817 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1067 2531 155 27 0 chr5 63276459 63276872 -89260387 - RLTR23 LTR ERV1 0 430 7 4 1067 461 62 0 15 chr5 63278024 63278090 -89259169 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 4 1067 219 190 0 0 chr5 63278091 63278149 -89259110 + A-rich Low_complexity Low_complexity 3 60 0 4 1067 2793 157 88 29 chr5 63279677 63279751 -89257508 - RLTR20A2 LTR ERVK 0 578 481 4 1067 342 0 0 0 chr5 63279751 63279789 -89257470 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1067 2793 157 88 29 chr5 63279789 63280260 -89256999 - RLTR20A2 LTR ERVK -98 480 2 4 1067 475 191 19 13 chr5 63281462 63281621 -89255638 + (CA)n Simple_repeat Simple_repeat 1 160 0 4 1067 232 190 12 12 chr5 63281638 63281718 -89255541 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1067 555 85 0 0 chr5 63281991 63282073 -89255186 + (CA)n Simple_repeat Simple_repeat 2 83 0 4 1067 1312 182 62 11 chr5 63282120 63282392 -89254867 + Lx3B LINE L1 6685 6970 -3 4 1067 198 0 0 0 chr5 63282404 63282426 -89254833 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1067 334 372 178 0 chr5 63282780 63282971 -89254288 + LTR33 LTR ERVL 112 336 -179 4 1067 813 177 0 7 chr5 63283444 63283586 -89253673 - B1_Mur4 SINE Alu 0 150 10 4 1067 328 308 0 0 chr5 63284814 63284931 -89252328 + PB1D10 SINE Alu 1 117 0 4 1067 202 365 0 12 chr5 63285198 63285284 -89251975 + L2a LINE L2 3342 3426 0 4 1067 1117 283 183 17 chr5 63285429 63285947 -89251312 + LTR65 LTR ERV1 46 649 -20 4 1067 1554 297 86 30 chr5 63288803 63289583 -89247676 + Lx9 LINE L1 6806 7629 -15 4 1067 302 285 85 45 chr5 63291069 63291293 -89245966 + L1MC3 LINE L1 7302 7534 -251 4 1067 293 254 25 33 chr5 63291446 63291568 -89245691 + Lx2B LINE L1 6876 6996 -4 4 1067 514 368 67 64 chr5 63291795 63292138 -89245121 + ORR1E LTR MaLR 6 349 -10 4 1067 430 353 84 5 chr5 63292146 63292337 -89244922 + ORR1E-int LTR MaLR 1 206 -1374 4 1067 1986 231 114 40 chr5 63292549 63293354 -89243905 - RMER6C LTR ERVK 0 720 10 4 1067 1199 263 125 112 chr5 63293451 63294041 -89243218 - MT2B LTR ERVL -3 598 1 4 1067 2703 71 25 0 chr5 63295459 63295826 -89241433 - L1_Mus3 LINE L1 0 6638 6263 4 1067 379 373 30 30 chr5 63295841 63296073 -89241186 + MLT1E2 LTR MaLR 24 255 -372 4 1067 1194 261 103 5 chr5 63296402 63296772 -89240487 + MTD LTR MaLR 14 419 0 4 1067 204 40 0 0 chr5 63297155 63297180 -89240079 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 4 1067 1074 230 12 5 chr5 63298779 63299059 -89238200 + L1VL4 LINE L1 207 501 -5801 4 1067 230 313 150 43 chr5 63300290 63300430 -89236829 - MLT1B LTR MaLR -235 155 1 4 1067 250 216 0 38 chr5 63301021 63301074 -89236185 + polypyrimidine Low_complexity Low_complexity 5 55 0 4 1067 490 264 23 69 chr5 63301080 63301255 -89236004 - MT2A LTR ERVL -152 381 215 4 1067 409 305 56 14 chr5 63301261 63301326 -89235933 - MTE2a LTR MaLR -230 149 85 4 1067 339 0 59 0 chr5 63301326 63301377 -89235882 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1067 409 305 56 14 chr5 63301377 63301454 -89235805 - MTE2a LTR MaLR -295 84 2 4 1067 4162 123 80 18 chr5 63302152 63302863 -89234396 - RMER6A LTR ERVK -1 755 1 4 1067 297 51 0 0 chr5 63303425 63303464 -89233795 + (GAA)n Simple_repeat Simple_repeat 1 39 0 4 1067 207 0 0 0 chr5 63303462 63303485 -89233774 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1067 21 0 0 0 chr5 63303872 63303893 -89233366 + AT_rich Low_complexity Low_complexity 1 21 0 4 1067 434 33 0 16 chr5 63304509 63304570 -89232689 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1067 1817 210 20 32 chr5 63305419 63306024 -89231235 + L1_Mur2 LINE L1 835 1437 -4440 4 1067 669 143 19 0 chr5 63306024 63306129 -89231130 + PB1D9 SINE Alu 1 107 -13 4 1067 348 43 0 0 chr5 63306131 63306177 -89231082 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 4 1067 1543 197 26 36 chr5 63306177 63306335 -89230924 + L1_Mur2 LINE L1 1438 1588 -4289 4 1067 937 182 75 13 chr5 63306321 63306549 -89230710 + L1_Mur2 LINE L1 4435 4676 -1201 4 1067 344 193 226 9 chr5 63306730 63306845 -89230414 + L1Md_F LINE L1 664 803 -5813 4 133 2538 138 11 62 chr5 63306853 63307777 -89229482 + L1Md_F LINE L1 725 1593 -4290 4 133 9125 92 71 1 chr5 63307772 63309158 -89228101 - L1_Mus1 LINE L1 -1232 4651 3169 4 1068 8149 102 5 2 chr5 63309144 63311058 -89226201 + L1_Mus1 LINE L1 4650 6567 0 4 1068 2113 165 5 8 chr5 63311064 63311454 -89225805 + L1_Mur2 LINE L1 4664 5052 -825 4 1068 400 224 39 78 chr5 63311454 63311633 -89225626 + Lx5 LINE L1 6018 6189 -861 4 1068 2471 185 95 30 chr5 63311671 63312240 -89225019 + Lx5 LINE L1 5846 6451 -599 4 1068 889 258 68 137 chr5 63312240 63312763 -89224496 - MT2B LTR ERVL -2 582 1 4 1068 27 49 0 0 chr5 63313144 63313185 -89224074 + AT_rich Low_complexity Low_complexity 1 41 0 4 1068 478 287 119 26 chr5 63313321 63313668 -89223591 - L1MC3 LINE L1 -3 7992 7377 4 1068 219 103 0 0 chr5 63313719 63313758 -89223501 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1068 358 314 42 69 chr5 63313758 63313902 -89223357 - RMER15 LTR ERVL -33 542 403 4 1068 374 333 42 36 chr5 63313914 63314079 -89223180 - RMER15 LTR ERVL -137 438 273 4 1068 273 260 19 57 chr5 63314240 63314330 -89222929 - L1MC3 LINE L1 -468 7317 7230 4 1068 1696 226 27 0 chr5 63314330 63314698 -89222561 - ORR1C1 LTR MaLR 0 378 1 4 1068 273 260 19 57 chr5 63314698 63314713 -89222546 - L1MC3 LINE L1 -556 7229 7216 4 1068 237 65 0 0 chr5 63314714 63314745 -89222514 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1068 22 35 0 0 chr5 63315240 63315269 -89221990 + AT_rich Low_complexity Low_complexity 1 29 0 4 1068 21 36 0 0 chr5 63316366 63316394 -89220865 + AT_rich Low_complexity Low_complexity 1 28 0 4 1068 4502 99 107 17 chr5 63317078 63317777 -89219482 + L1_Mus4 LINE L1 5869 6630 -6 4 1068 227 342 8 66 chr5 63318040 63318162 -89219097 + MLT1E3 LTR MaLR 80 194 -430 4 1068 433 254 8 8 chr5 63320104 63320223 -89217036 + Lx9 LINE L1 7351 7469 -175 4 1068 207 0 0 0 chr5 63320230 63320253 -89217006 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1068 263 290 24 0 chr5 63320773 63320897 -89216362 + L1_Rod LINE L1 3477 3603 -2244 4 1068 582 15 0 0 chr5 63320903 63320970 -89216289 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 1068 477 0 0 0 chr5 63320968 63321021 -89216238 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 4 1068 4101 46 0 2 chr5 63321633 63322132 -89215127 - L1Md_F3 LINE L1 -14 6570 6073 4 1068 234 0 0 0 chr5 63322789 63322815 -89214444 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1068 23 33 0 0 chr5 63323059 63323089 -89214170 + AT_rich Low_complexity Low_complexity 1 30 0 4 1068 1391 321 44 20 chr5 63323755 63324449 -89212810 + L1M2 LINE L1 4154 4870 -1273 4 1068 207 0 0 0 chr5 63324449 63324472 -89212787 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1068 1391 321 44 20 chr5 63324472 63324664 -89212595 + L1M2 LINE L1 4871 5060 -1083 4 1068 1594 258 15 5 chr5 63325193 63325583 -89211676 + MTD LTR MaLR 13 406 -13 4 1068 387 0 0 0 chr5 63325776 63325819 -89211440 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1068 277 254 0 15 chr5 63325838 63325906 -89211353 - L1MEg LINE L1 -6004 80 14 4 1068 22 70 0 0 chr5 63327377 63327420 -89209839 + AT_rich Low_complexity Low_complexity 1 43 0 4 1068 758 259 68 56 chr5 63328266 63328516 -89208743 + MTE2a LTR MaLR 123 375 -4 4 1068 406 130 14 0 chr5 63328894 63328963 -89208296 + Lx6 LINE L1 5827 5896 -1564 4 1068 576 325 71 0 chr5 63328952 63329164 -89208095 - Lx5 LINE L1 -633 6417 6191 4 1068 1189 214 174 12 chr5 63329163 63329490 -89207769 + Lx6 LINE L1 5894 6273 -1187 4 1068 1608 267 126 28 chr5 63329490 63330325 -89206934 + Lx6 LINE L1 6518 7434 -26 4 1068 395 19 56 0 chr5 63330326 63330380 -89206879 + (TAAAA)n Simple_repeat Simple_repeat 4 60 0 4 1068 195 100 0 0 chr5 63331232 63331262 -89205997 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1068 465 50 0 0 chr5 63331262 63331322 -89205937 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1068 519 261 9 0 chr5 63331402 63331513 -89205746 - B3A SINE B2 -86 112 1 4 1068 640 277 73 16 chr5 63331547 63331738 -89205521 - B3 SINE B2 0 216 15 4 1068 233 222 19 0 chr5 63332451 63332505 -89204754 + CT-rich Low_complexity Low_complexity 1 55 0 4 1068 557 350 80 46 chr5 63332551 63332988 -89204271 - HAL1 LINE L1 -1111 1396 945 4 1068 225 200 0 39 chr5 63332989 63333067 -89204192 + Lx9 LINE L1 7520 7594 -50 4 1068 30 27 0 0 chr5 63333540 63333577 -89203682 + AT_rich Low_complexity Low_complexity 1 37 0 4 1068 240 274 0 16 chr5 63335661 63335724 -89201535 + Lx6 LINE L1 5914 5975 -1485 4 1068 223 163 0 0 chr5 63336053 63336096 -89201163 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1068 1331 264 36 24 chr5 63336117 63336536 -89200723 + Lx6 LINE L1 5850 6273 -1187 4 1068 1235 276 96 34 chr5 63336536 63337059 -89200200 + Lx6 LINE L1 6455 7129 -331 4 1068 4957 92 30 1 chr5 63337059 63337768 -89199491 - L1_Mus3 LINE L1 -5 6633 5905 4 1068 1235 294 60 50 chr5 63337768 63338058 -89199201 + Lx6 LINE L1 7130 7433 -27 4 1068 370 302 40 0 chr5 63338110 63338236 -89199023 - Zaphod DNA Tip100 -13 4018 3888 4 1068 11767 50 3 3 chr5 63338867 63340421 -89196838 + L1Md_F2 LINE L1 4032 5586 -297 4 1068 7743 48 24 2 chr5 63340421 63341392 -89195867 + L1Md_F2 LINE L1 5587 6578 -4 4 1068 21 0 0 0 chr5 63342424 63342445 -89194814 + AT_rich Low_complexity Low_complexity 1 21 0 4 1068 230 312 77 35 chr5 63342809 63342940 -89194319 - MIRb SINE MIR -53 155 21 4 1068 219 123 34 34 chr5 63343171 63343230 -89194029 + (TATG)n Simple_repeat Simple_repeat 2 60 0 4 1068 380 239 21 14 chr5 63343231 63343371 -89193888 - Lx9 LINE L1 -10 7634 7494 4 1068 381 304 64 14 chr5 63344454 63344594 -89192665 - MIRb SINE MIR -59 209 63 4 1068 222 283 87 0 chr5 63344950 63345042 -89192217 - MIRb SINE MIR -38 230 131 4 1068 3463 81 0 33 chr5 63345540 63346026 -89191233 + L1Md_F2 LINE L1 6101 6570 -12 4 1068 1492 92 0 0 chr5 63346078 63346285 -89190974 - L1Md_F2 LINE L1 -397 6185 5979 4 1068 35337 31 0 0 chr5 63346343 63351522 -89185737 - L1Md_A LINE L1 0 6582 1402 4 1068 3952 118 3 103 chr5 63351508 63352347 -89184912 - L1Md_A LINE L1 -5460 1264 511 4 1068 748 177 91 6 chr5 63352401 63352566 -89184693 - Lx2 LINE L1 -3 6994 6816 4 1068 267 308 87 17 chr5 63353261 63353433 -89183826 + L1MB1 LINE L1 5869 6052 -116 5 1068 281 235 28 47 chr5 63353964 63354071 -89183188 + Charlie1a DNA MER1_type 1335 1439 -16 5 1068 1140 247 77 22 chr5 63354106 63354241 -89183018 - Lx9 LINE L1 -2 7642 7511 5 1068 405 0 0 0 chr5 63354241 63354286 -89182973 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1068 1140 247 77 22 chr5 63354286 63354564 -89182695 - Lx9 LINE L1 -134 7510 7207 5 1068 281 346 100 6 chr5 63354798 63354958 -89182301 + RMER15 LTR ERVL 261 435 -140 5 1068 8537 4 0 0 chr5 63354965 63356115 -89181144 - L1Md_A LINE L1 0 6582 5433 5 1068 317 387 21 0 chr5 63356115 63356257 -89181002 + RMER15 LTR ERVL 415 559 -16 5 1068 409 288 79 40 chr5 63356516 63356744 -89180515 - Lx8 LINE L1 -9 7464 7228 5 1068 272 380 101 0 chr5 63358552 63358731 -89178528 - MLT1D LTR MaLR 0 505 309 5 1068 297 376 39 24 chr5 63358762 63358969 -89178290 - MLT1D LTR MaLR -276 229 20 5 1068 2549 43 71 0 chr5 63359883 63360206 -89177053 + ORR1A1 LTR MaLR 1 346 0 5 1068 1666 114 0 16 chr5 63360210 63360468 -89176791 + L1_Mus2 LINE L1 6204 6457 -109 5 1068 10180 132 11 1 chr5 63360464 63362172 -89175087 + L1_Mm LINE L1 4061 5784 -99 5 1068 2416 296 77 48 chr5 63363724 63364957 -89172302 - Lx8 LINE L1 -1 7472 6204 5 1068 578 14 0 14 chr5 63364965 63365037 -89172222 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 5 1068 432 0 0 0 chr5 63365041 63365089 -89172170 + (TTA)n Simple_repeat Simple_repeat 2 49 0 5 1068 21 0 0 0 chr5 63365766 63365787 -89171472 + AT_rich Low_complexity Low_complexity 1 21 0 5 1068 1319 235 109 18 chr5 63365813 63366143 -89171116 + ORR1D2 LTR MaLR 7 366 -4 5 1068 325 205 72 116 chr5 63366411 63366549 -89170710 + RMER2 LTR ERV1 435 566 -1 5 1068 216 175 31 16 chr5 63367343 63367407 -89169852 + (CAAA)n Simple_repeat Simple_repeat 3 67 0 5 1068 665 323 57 83 chr5 63367424 63367843 -89169416 + MLT1A1 LTR MaLR 1 408 0 5 1068 299 258 15 0 chr5 63368287 63368353 -89168906 - RLTR10A LTR ERVK 0 411 345 5 1068 3303 42 3 0 chr5 63368353 63368737 -89168522 + IAPEY_LTR LTR ERVK 1 385 0 5 1068 1205 44 0 19 chr5 63368737 63368899 -89168360 + IAPEy-int LTR ERVK 1 159 -7354 5 1068 2704 142 14 12 chr5 63368900 63369415 -89167844 + IAPEy-int LTR ERVK 543 1058 -6455 5 1068 20744 46 3 6 chr5 63369415 63372133 -89165126 + IAPEy-int LTR ERVK 4804 7513 0 5 1068 3254 47 3 0 chr5 63372133 63372517 -89164742 + IAPEY_LTR LTR ERVK 1 385 0 5 1068 368 248 6 135 chr5 63372529 63372692 -89164567 - RLTR10A LTR ERVK -123 288 147 5 1068 210 37 0 0 chr5 63372978 63373005 -89164254 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1068 654 212 13 33 chr5 63373005 63373146 -89164113 - B1_Mur3 SINE Alu -8 141 2 5 1068 4319 112 17 5 chr5 63374353 63374991 -89162268 + L1_Mus4 LINE L1 5991 6636 0 5 1068 1194 48 18 0 chr5 63375570 63375736 -89161523 + (TTCC)n Simple_repeat Simple_repeat 2 170 0 5 1068 2612 207 60 73 chr5 63375751 63376465 -89160794 + Lx6 LINE L1 6287 6991 -469 5 1068 1820 281 33 45 chr5 63376499 63377103 -89160156 - ORR1D2-int LTR MaLR -772 598 2 5 1068 533 286 93 25 chr5 63377104 63377308 -89159951 - ORR1D2 LTR MaLR 0 370 153 5 1068 378 0 0 0 chr5 63377309 63377351 -89159908 + (GAGAA)n Simple_repeat Simple_repeat 4 45 0 5 1068 1220 89 0 11 chr5 63377351 63377532 -89159727 + (GGAGA)n Simple_repeat Simple_repeat 2 180 0 5 1068 370 94 31 0 chr5 63377541 63377605 -89159654 + (GGA)n Simple_repeat Simple_repeat 3 68 0 5 1068 321 358 0 0 chr5 63377670 63377765 -89159494 - ORR1D2 LTR MaLR -274 96 2 5 1068 291 333 20 10 chr5 63379952 63380052 -89157207 - PB1D10 SINE Alu -8 109 9 5 1068 2659 167 30 2 chr5 63380408 63380907 -89156352 - Lx5 LINE L1 -945 6105 5593 5 1068 329 219 140 0 chr5 63380901 63381015 -89156244 - Lx5 LINE L1 -6063 1023 894 5 1068 282 202 15 30 chr5 63382321 63382454 -89154805 + (TCTCTG)n Simple_repeat Simple_repeat 2 132 0 5 1068 674 152 13 38 chr5 63382647 63382804 -89154455 - Lx LINE L1 -3 6651 6499 5 1068 560 272 75 31 chr5 63383383 63383559 -89153700 - B3A SINE B2 0 216 35 5 1068 1750 253 10 5 chr5 63383559 63383972 -89153287 + MTC LTR MaLR 5 419 -2 5 1068 447 330 57 26 chr5 63383972 63383988 -89153271 - B3 SINE B2 -182 34 19 5 1068 346 330 57 31 chr5 63385539 63385733 -89151526 + L1MD2 LINE L1 77 275 -6358 5 1068 38 39 0 0 chr5 63385749 63385801 -89151458 + AT_rich Low_complexity Low_complexity 1 52 0 5 1068 273 396 25 5 chr5 63385801 63385999 -89151260 + L1MD2 LINE L1 363 564 -6069 5 1068 381 262 101 28 chr5 63386342 63386589 -89150670 + L1MD2 LINE L1 972 1236 -5397 5 1068 4096 115 24 27 chr5 63386796 63386919 -89150340 - Lx LINE L1 -2 6652 6534 5 1068 180 0 0 0 chr5 63386919 63386939 -89150320 + (CCCA)n Simple_repeat Simple_repeat 3 22 0 5 1068 4096 115 24 27 chr5 63386939 63387475 -89149784 - Lx LINE L1 -121 6533 5996 5 1068 998 162 6 0 chr5 63387475 63387654 -89149605 - L1_Mur2 LINE L1 -635 5242 5063 5 1068 638 311 78 16 chr5 63387654 63387847 -89149412 + B3 SINE B2 12 216 0 5 1068 1572 216 45 31 chr5 63387858 63388211 -89149048 - ORR1B2 LTR MaLR -9 358 1 5 1068 264 295 28 9 chr5 63388388 63388494 -89148765 + L1MD2 LINE L1 1683 1790 -4843 5 1068 212 323 97 0 chr5 63388536 63388598 -89148661 - ID4_ SINE ID -4 79 12 5 1068 821 296 118 24 chr5 63388694 63389562 -89147697 + L1MD2 LINE L1 5678 6627 -6 5 1068 503 278 0 17 chr5 63391079 63391196 -89146063 - B3 SINE B2 -91 125 11 5 1068 316 328 22 45 chr5 63391228 63391362 -89145897 - MLT1A1 LTR MaLR -275 133 3 5 1068 333 293 121 33 chr5 63392394 63392609 -89144650 - L2 LINE L2 -914 2505 2272 5 1068 267 18 0 155 chr5 63392680 63392809 -89144450 + (CGGGG)n Simple_repeat Simple_repeat 1 109 0 5 1068 21 36 0 0 chr5 63393102 63393130 -89144129 + AT_rich Low_complexity Low_complexity 1 28 0 5 1068 1213 298 65 25 chr5 63393201 63393690 -89143569 + RMER5 LTR ERV1 26 534 0 5 1068 1125 122 11 0 chr5 63394308 63394496 -89142763 - L1_Mus3 LINE L1 0 6638 6449 5 1068 343 293 90 82 chr5 63396304 63396438 -89140821 + B1F2 SINE Alu 12 146 -3 5 1068 306 0 0 0 chr5 63396438 63396472 -89140787 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1068 328 327 157 4 chr5 63397426 63397675 -89139584 + B4A SINE B4 2 288 -4 5 1068 236 140 0 39 chr5 63397679 63397731 -89139528 + (CATA)n Simple_repeat Simple_repeat 3 52 0 5 1068 573 55 0 0 chr5 63398327 63398400 -89138859 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1068 5477 140 19 2 chr5 63398496 63399662 -89137597 + Lx LINE L1 5246 6438 -216 5 1068 1132 288 74 43 chr5 63399719 63400140 -89137119 - Lx8 LINE L1 -76 7397 6964 5 1068 4156 73 4 4 chr5 63400210 63400762 -89136497 - L1_Mus1 LINE L1 0 6567 6016 5 1068 910 102 0 0 chr5 63400762 63400889 -89136370 + L1_Mus1 LINE L1 5867 5993 -574 5 1068 1068 95 101 0 chr5 63401308 63401476 -89135783 - B2_Mm2 SINE B2 -3 192 8 5 1068 218 237 37 73 chr5 63401403 63401485 -89135774 - B4A SINE B4 -211 81 3 5 1068 493 323 29 78 chr5 63401547 63401752 -89135507 - B3A SINE B2 0 198 4 5 1068 407 266 35 14 chr5 63401887 63402032 -89135227 - Lx8 LINE L1 -142 7331 7184 5 1068 207 0 0 0 chr5 63402100 63402123 -89135136 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1068 466 209 87 13 chr5 63403718 63403868 -89133391 - Lx4B LINE L1 -7 7051 6891 5 1068 2961 174 13 62 chr5 63403854 63404453 -89132806 - L1_Mur2 LINE L1 -7 5870 5301 5 1068 573 347 42 35 chr5 63404688 63404975 -89132284 - B4A SINE B4 0 292 4 5 1068 1338 175 40 27 chr5 63405044 63405343 -89131916 + L1_Mur2 LINE L1 5416 5691 -192 5 1068 212 162 0 0 chr5 63406377 63406414 -89130845 + CT-rich Low_complexity Low_complexity 4 40 0 5 1068 3957 46 0 2 chr5 63406541 63407023 -89130236 - L1Md_F3 LINE L1 -12 6572 6092 5 1068 982 92 13 0 chr5 63407098 63407250 -89130009 + (GGA)n Simple_repeat Simple_repeat 3 156 0 5 1068 939 213 48 55 chr5 63407526 63407819 -89129440 - Lx7 LINE L1 -38 7658 7368 5 1068 2159 233 44 76 chr5 63407906 63408085 -89129174 - L1_Mur3 LINE L1 -307 5579 5405 5 1068 265 86 0 0 chr5 63408085 63408120 -89129139 + U2 snRNA snRNA 1 35 -153 5 1068 2159 233 44 76 chr5 63408120 63408300 -89128959 - L1_Mur3 LINE L1 -307 5404 5227 5 1068 521 15 0 15 chr5 63408300 63408367 -89128892 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1068 450 0 0 0 chr5 63408374 63408424 -89128835 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1068 2159 177 53 50 chr5 63408424 63408751 -89128508 - L1_Mur3 LINE L1 -652 5234 4894 5 1068 441 275 78 35 chr5 63408776 63409006 -89128253 + RLTR12B LTR ERVK 247 486 -42 5 1068 2512 195 175 18 chr5 63409090 63409591 -89127668 - L1_Mur3 LINE L1 -984 4896 4294 5 1068 240 59 0 0 chr5 63409591 63409625 -89127634 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 5 1068 2512 195 175 18 chr5 63409625 63409791 -89127468 - L1_Mur3 LINE L1 -1587 4293 4124 5 1068 3430 239 56 8 chr5 63410016 63410858 -89126401 + Lx7 LINE L1 6546 7427 -269 5 1068 316 286 73 26 chr5 63410880 63411031 -89126228 + Lx7 LINE L1 7538 7695 -1 5 1068 844 112 20 7 chr5 63411425 63411577 -89125682 - L1_Mus3 LINE L1 -3 6635 6482 5 1068 2997 71 10 2 chr5 63411577 63411970 -89125289 - MTA_Mm LTR MaLR 0 396 1 5 1068 7232 92 18 69 chr5 63411970 63413127 -89124132 - MTA_Mm-int LTR MaLR 0 1098 1 5 1068 2903 68 3 5 chr5 63413127 63413514 -89123745 - MTA_Mm LTR MaLR 0 396 11 5 1068 5146 83 16 0 chr5 63413518 63414220 -89123039 - L1_Mus3 LINE L1 -126 6512 5800 5 1068 21916 154 9 61 chr5 63415527 63419302 -89117957 - L1_Mus1 LINE L1 0 6567 3142 5 1068 4151 53 0 8 chr5 63419302 63419829 -89117430 - L1Md_F3 LINE L1 -1 6583 6061 5 1068 21916 177 18 61 chr5 63419829 63422527 -89114732 - L1_Mus1 LINE L1 -2745 3141 434 5 1068 765 298 280 18 chr5 63423027 63423516 -89113743 + Lx8 LINE L1 6704 7320 -153 5 1068 758 11 11 0 chr5 63423527 63423618 -89113641 + (GAAAA)n Simple_repeat Simple_repeat 1 92 0 5 1068 604 298 22 82 chr5 63423905 63424172 -89113087 - ORR1E LTR MaLR -105 254 4 5 1068 389 264 0 19 chr5 63424196 63424304 -89112955 - L1M2 LINE L1 -1574 4569 4464 5 1068 421 340 21 0 chr5 63424944 63425085 -89112174 - ORR1E LTR MaLR -214 145 2 5 1068 1600 346 108 66 chr5 63425085 63426030 -89111229 + MLT-int LTR MaLR 704 1688 -47 5 1068 584 308 79 34 chr5 63426030 63426306 -89110953 - MLT1A1 LTR MaLR 0 408 89 5 1068 272 368 72 0 chr5 63426518 63426643 -89110616 + MLT1A0 LTR MaLR 5 138 -227 5 1068 502 339 49 38 chr5 63427388 63427655 -89109604 + B4A SINE B4 4 273 -19 5 1068 533 115 11 0 chr5 63427661 63427748 -89109511 + (CA)n Simple_repeat Simple_repeat 2 89 0 5 1068 814 286 41 90 chr5 63429134 63429602 -89107657 - RLTR12B LTR ERVK -42 486 42 5 1068 498 75 0 0 chr5 63429638 63429705 -89107554 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1068 1431 56 76 5 chr5 63430581 63430779 -89106480 - L1_Mus2 LINE L1 -1 6565 6354 5 1068 23 0 0 0 chr5 63431502 63431525 -89105734 + AT_rich Low_complexity Low_complexity 1 23 0 5 1068 2276 243 11 59 chr5 63432139 63432682 -89104577 + RMER12B LTR ERVK 1 517 -887 5 1068 6694 100 9 101 chr5 63432682 63433127 -89104132 - Lx3_Mus LINE L1 -167 6842 6412 5 1068 693 91 32 32 chr5 63433127 63433252 -89104007 - L1Md_F2 LINE L1 -12 6570 6446 5 1068 6694 100 9 101 chr5 63433252 63433997 -89103262 - Lx3_Mus LINE L1 -598 6411 5761 5 1068 591 160 23 60 chr5 63434020 63434153 -89103106 - RMER19C LTR ERVK -481 130 3 6 1068 2711 233 39 12 chr5 63434154 63434802 -89102457 + RMER12B LTR ERVK 515 1179 -225 5 1068 513 0 0 0 chr5 63434808 63434865 -89102394 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1068 378 239 11 0 chr5 63434878 63434966 -89102293 + RLTR21 LTR ERVK 1438 1526 -46 6 1068 334 349 7 20 chr5 63435721 63435873 -89101386 + Lx8 LINE L1 7192 7341 -132 6 1068 1126 76 0 0 chr5 63436130 63436275 -89100984 + B1_Mus1 SINE Alu 2 146 -2 6 1068 366 23 0 0 chr5 63436275 63436318 -89100941 + (TAA)n Simple_repeat Simple_repeat 2 44 0 6 1068 26 50 0 0 chr5 63437371 63437411 -89099848 + AT_rich Low_complexity Low_complexity 1 40 0 6 1068 2406 43 0 7 chr5 63438148 63438451 -89098808 + L1Md_F3 LINE L1 6270 6570 -14 6 1069 1253 239 50 28 chr5 63438932 63439294 -89097965 + ORR1D1 LTR MaLR 5 374 0 6 1069 631 340 83 57 chr5 63439459 63439808 -89097451 - MLT1H LTR MaLR -181 368 11 6 1069 2889 169 42 17 chr5 63439840 63440382 -89096877 + RLTR20B1 LTR ERVK 1 556 -7 6 1069 21 57 0 0 chr5 63441047 63441082 -89096177 + AT_rich Low_complexity Low_complexity 1 35 0 6 1069 573 96 0 0 chr5 63441308 63441402 -89095857 + (TG)n Simple_repeat Simple_repeat 1 94 0 6 1069 22 0 0 0 chr5 63443140 63443162 -89094097 + AT_rich Low_complexity Low_complexity 1 22 0 6 1069 241 318 0 0 chr5 63443235 63443298 -89093961 + (CATA)n Simple_repeat Simple_repeat 1 63 0 6 1069 488 220 92 38 chr5 63443418 63443602 -89093657 + RMER13B LTR ERVK 624 817 -91 6 1069 2635 87 107 0 chr5 63444298 63444689 -89092570 - L1_Mus3 LINE L1 0 6638 6206 6 1069 25 0 0 0 chr5 63445756 63445781 -89091478 + AT_rich Low_complexity Low_complexity 1 25 0 6 1069 533 311 88 5 chr5 63446816 63447010 -89090249 - B3 SINE B2 -5 211 2 6 1069 651 106 0 26 chr5 63447396 63447512 -89089747 + Lx LINE L1 6542 6654 0 6 1069 1108 89 0 0 chr5 63447515 63447661 -89089598 + B1_Mus2 SINE Alu 1 146 -1 6 1069 198 0 0 0 chr5 63447682 63447704 -89089555 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 6 1069 878 305 60 57 chr5 63448231 63448582 -89088677 - ORR1D2 LTR MaLR -10 360 9 6 1069 270 0 0 0 chr5 63448679 63448709 -89088550 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1069 639 367 52 4 chr5 63448948 63449216 -89088043 + B4 SINE B4 4 284 -8 6 1069 273 75 0 0 chr5 63449219 63449259 -89088000 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1069 235 296 74 70 chr5 63449558 63449816 -89087443 - L1MEe LINE L1 -4479 375 117 6 1069 183 42 0 0 chr5 63449833 63449857 -89087402 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1069 228 100 0 0 chr5 63449864 63449904 -89087355 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6 1069 812 129 0 25 chr5 63450112 63450271 -89086988 - Lx LINE L1 -4 6650 6496 6 1069 236 370 41 58 chr5 63450311 63450345 -89086914 - B3 SINE B2 -4 212 178 6 1069 528 16 0 0 chr5 63450345 63450406 -89086853 + (TATG)n Simple_repeat Simple_repeat 4 64 0 6 1069 363 325 28 89 chr5 63450406 63450585 -89086674 - B3A SINE B2 -23 175 8 6 1069 21 36 0 0 chr5 63451104 63451132 -89086127 + AT_rich Low_complexity Low_complexity 1 28 0 6 1069 8195 45 2 3 chr5 63451831 63452864 -89084395 - L1Md_F2 LINE L1 -1 6581 5550 6 1069 1083 61 0 0 chr5 63452861 63452993 -89084266 + L1Md_F2 LINE L1 5442 5573 -310 6 1069 813 284 24 0 chr5 63453016 63453227 -89084032 + B3 SINE B2 1 216 0 6 1069 467 319 39 113 chr5 63453249 63453479 -89083780 - B3A SINE B2 -2 214 2 6 1069 1139 108 0 0 chr5 63453596 63453753 -89083506 - Lx3_Mus LINE L1 -536 6473 6317 6 1069 3322 103 45 2 chr5 63453753 63454238 -89083021 + Lx3_Mus LINE L1 6496 7001 -8 6 1069 761 342 103 29 chr5 63455298 63455746 -89081513 - Lx8 LINE L1 -73 7400 6920 6 1069 1097 329 50 106 chr5 63456424 63457355 -89079904 - Lx9 LINE L1 -161 7483 6605 6 1069 453 298 20 10 chr5 63457451 63457651 -89079608 + Lx9 LINE L1 5764 5965 -1679 6 1069 251 188 62 0 chr5 63457756 63457836 -89079423 + (TA)n Simple_repeat Simple_repeat 2 86 0 6 1069 517 329 67 28 chr5 63457838 63458123 -89079136 + Lx9 LINE L1 6301 6596 -1048 6 1069 423 333 14 7 chr5 63458603 63458742 -89078517 + LTR16C LTR ERVL 302 441 -48 6 1069 246 218 18 0 chr5 63458787 63458842 -89078417 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1069 240 343 58 58 chr5 63459327 63459516 -89077743 + MER68 LTR ERVL 347 535 -28 6 1069 224 91 0 22 chr5 63459779 63459824 -89077435 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 6 1069 234 0 0 0 chr5 63459826 63459852 -89077407 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1069 272 67 0 0 chr5 63460515 63460560 -89076699 - Lx2 LINE L1 -3 6994 6950 6 1069 2086 136 3 26 chr5 63460562 63460903 -89076356 - Lx2 LINE L1 -536 6461 6129 6 1069 216 0 0 0 chr5 63460954 63460978 -89076281 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 6 1069 356 229 16 128 chr5 63461094 63461219 -89076040 + MT2B LTR ERVL 154 264 -337 6 1069 826 138 0 0 chr5 63461110 63461233 -89076026 + B1_Mus1 SINE Alu 5 127 -21 6 1069 213 175 0 0 chr5 63461233 63461273 -89075986 + A-rich Low_complexity Low_complexity 2 41 0 6 1069 6920 49 9 0 chr5 63461641 63462500 -89074759 + L1Md_F2 LINE L1 5713 6579 -3 6 1069 3784 132 7 132 chr5 63462707 63463043 -89074216 - L1_Mm LINE L1 -426 5457 5146 6 1069 2112 70 13 48 chr5 63463043 63463358 -89073901 - L1Md_F2 LINE L1 0 6582 6279 6 1069 3784 132 7 132 chr5 63463358 63463858 -89073401 - L1_Mm LINE L1 -738 5145 4734 6 1069 279 0 0 0 chr5 63463858 63463889 -89073370 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1069 3784 132 7 132 chr5 63463889 63463947 -89073312 - L1_Mm LINE L1 -1150 4733 4675 6 1069 2388 128 37 20 chr5 63463947 63464355 -89072904 + Lx LINE L1 6236 6650 -4 6 1069 1043 75 7 0 chr5 63464356 63464502 -89072757 + (GGAAA)n Simple_repeat Simple_repeat 1 147 0 6 1069 23 0 0 0 chr5 63464895 63464918 -89072341 + AT_rich Low_complexity Low_complexity 1 23 0 6 1069 406 299 0 38 chr5 63465000 63465132 -89072127 - RMER5 LTR ERV1 -15 519 393 6 1069 270 0 0 0 chr5 63465214 63465244 -89072015 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 6 1069 233 311 191 6 chr5 63465258 63465426 -89071833 - RMER5 LTR ERV1 -287 247 49 6 1069 957 208 14 0 chr5 63466648 63466855 -89070404 - L1_Mur2 LINE L1 -887 4990 4781 6 1069 969 283 114 39 chr5 63466855 63467267 -89069992 + RLTR22_Mur LTR ERVK 1 443 -1405 6 1069 2256 27 0 0 chr5 63467269 63467530 -89069729 - L1Md_A LINE L1 -132 6450 6190 6 1069 285 301 94 94 chr5 63467639 63467819 -89069440 - MLT1B LTR MaLR -141 249 70 6 1069 202 291 0 0 chr5 63467823 63467878 -89069381 + A-rich Low_complexity Low_complexity 5 59 0 6 1069 654 212 46 186 chr5 63467975 63468282 -89068977 + RLTR22_Mur LTR ERVK 484 747 -1101 6 1069 4535 54 0 3 chr5 63468294 63468869 -89068390 + L1Md_F3 LINE L1 6012 6584 0 6 1069 1083 16 0 0 chr5 63468986 63469111 -89068148 + (CA)n Simple_repeat Simple_repeat 2 126 0 6 1069 200 95 0 67 chr5 63469240 63469285 -89067974 + T-rich Low_complexity Low_complexity 1 42 0 6 1069 643 332 122 67 chr5 63469340 63469461 -89067798 + RLTR22_Mur LTR ERVK 1192 1317 -531 6 1069 495 0 0 0 chr5 63469461 63469516 -89067743 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1069 643 332 122 67 chr5 63469516 63469845 -89067414 + RLTR22_Mur LTR ERVK 1318 1666 -182 6 1069 2723 190 57 10 chr5 63469982 63470592 -89066667 - L1_Mur2 LINE L1 -1093 4784 4146 6 1069 8023 89 9 6 chr5 63470603 63472428 -89064831 - L1_Mus1 LINE L1 -1 6566 4732 6 1069 833 156 100 0 chr5 63472439 63472599 -89064660 - L1Md_F2 LINE L1 -2 6580 6405 6 1069 327 24 0 23 chr5 63472595 63472638 -89064621 - L1_Mur2 LINE L1 -1144 4733 4692 6 1069 7393 152 27 29 chr5 63472637 63475017 -89062242 + Lx5 LINE L1 3542 6214 -836 6 1069 2536 217 22 2 chr5 63475003 63475493 -89061766 + Lx5 LINE L1 6381 6880 -170 6 1069 1667 129 19 53 chr5 63475510 63475828 -89061431 - IAPLTR2b LTR ERVK -20 307 1 6 1069 738 272 6 12 chr5 63475832 63476003 -89061256 + Lx5 LINE L1 6878 7047 -3 6 1069 561 76 0 0 chr5 63476027 63476106 -89061153 + (GGGA)n Simple_repeat Simple_repeat 3 81 0 6 1069 646 65 11 11 chr5 63476208 63476302 -89060957 - Lx3C LINE L1 -1020 5956 5863 6 1069 6248 135 12 18 chr5 63476302 63477327 -89059932 + Lx3B LINE L1 5955 6973 0 6 1069 186 261 215 0 chr5 63478438 63478503 -89058756 - MIRc SINE MIR -183 85 7 6 1069 324 237 41 10 chr5 63478585 63478683 -89058576 + L1M2 LINE L1 4608 4708 -1435 6 1069 2127 43 21 134 chr5 63478690 63479064 -89058195 + L1Md_A LINE L1 423 754 -5970 6 1069 34302 22 1 0 chr5 63479057 63483114 -89054145 + L1Md_A LINE L1 1528 5586 -297 6 1069 8515 24 1 0 chr5 63483114 63484108 -89053151 + L1Md_A LINE L1 5587 6581 -1 6 1069 536 298 108 6 chr5 63484111 63484455 -89052804 + L1M2 LINE L1 4709 5087 -1056 6 1069 405 90 0 0 chr5 63484464 63484531 -89052728 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 6 1069 455 269 87 141 chr5 63484708 63485041 -89052218 - MER31B LTR ERV1 0 466 152 6 1069 1053 82 7 7 chr5 63485684 63485831 -89051428 + B1_Mm SINE Alu 1 147 0 6 1069 279 114 0 0 chr5 63485833 63485877 -89051382 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1069 324 350 49 12 chr5 63486068 63486230 -89051029 + HAL1 LINE L1 1408 1575 -932 6 1069 241 296 59 7 chr5 63486288 63486424 -89050835 + L1MC1 LINE L1 6013 6155 -178 6 1069 21 0 0 0 chr5 63486964 63486985 -89050274 + AT_rich Low_complexity Low_complexity 1 21 0 6 1069 537 292 104 11 chr5 63487026 63487286 -89049973 + L1MC1 LINE L1 6016 6299 -34 6 1069 315 222 0 0 chr5 63487325 63487406 -89049853 + A-rich Low_complexity Low_complexity 1 81 0 6 1069 401 432 10 25 chr5 63487407 63487604 -89049655 + B4A SINE B4 83 276 -16 6 1069 243 190 0 0 chr5 63487634 63487692 -89049567 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1069 734 306 15 35 chr5 63487769 63487969 -89049290 + ID_B1 SINE B4 1 196 -28 6 1069 281 311 152 0 chr5 63488975 63489107 -89048152 + MER20 DNA MER1_type 51 202 -17 6 1069 322 365 41 25 chr5 63489561 63489758 -89047501 + L2 LINE L2 2784 2983 -436 6 1069 285 250 33 0 chr5 63489898 63489958 -89047301 + B3A SINE B2 1 62 -136 6 1069 272 261 11 54 chr5 63489978 63490071 -89047188 + B3 SINE B2 128 216 0 6 1069 539 291 95 64 chr5 63490491 63490774 -89046485 + B4 SINE B4 1 292 0 6 1069 491 169 35 6 chr5 63491366 63491539 -89045720 + (CA)n Simple_repeat Simple_repeat 1 178 0 6 1069 294 179 0 0 chr5 63491688 63491744 -89045515 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1069 2161 197 5 3 chr5 63492395 63492787 -89044472 + ORR1B1 LTR MaLR 1 393 -1 6 1069 333 0 0 0 chr5 63493404 63493441 -89043818 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 7 1069 736 368 31 24 chr5 63494163 63494450 -89042809 - B4 SINE B4 0 292 4 7 1069 2206 79 20 0 chr5 63494515 63494819 -89042440 - L1_Mus3 LINE L1 -9 6629 6320 7 1069 22 35 0 0 chr5 63495092 63495121 -89042138 + AT_rich Low_complexity Low_complexity 1 29 0 7 1069 588 69 0 0 chr5 63495140 63495212 -89042047 - L1_Mus2 LINE L1 -129 6438 6367 7 1069 229 56 0 0 chr5 63495210 63495246 -89042013 + L1_Mus2 LINE L1 6530 6565 -1 7 1069 363 105 0 0 chr5 63496125 63496182 -89041077 + (TATG)n Simple_repeat Simple_repeat 4 60 0 7 1069 425 244 59 12 chr5 63496189 63496329 -89040930 - Lx7 LINE L1 -1280 6416 6279 7 1069 330 252 31 6 chr5 63496297 63496455 -89040804 + L1_Mur3 LINE L1 5423 5579 -661 7 1069 329 230 142 69 chr5 63496446 63496679 -89040580 + L1MA6 LINE L1 6027 6276 -24 7 1069 742 118 79 0 chr5 63497162 63497289 -89039970 - RLTR12A LTR ERVK 0 568 432 7 1069 1101 65 0 0 chr5 63497290 63497443 -89039816 - L1Md_F2 LINE L1 -2 6580 6428 7 1069 2526 68 0 6 chr5 63497443 63497796 -89039463 + L1_Mm LINE L1 1738 2088 -3795 7 1069 2335 168 12 19 chr5 63497800 63498214 -89039045 - RLTR12A LTR ERVK -125 443 33 7 1069 900 217 133 47 chr5 63498489 63498789 -89038470 - ORR1C1 LTR MaLR -18 360 2 7 1069 2512 211 99 22 chr5 63498790 63499377 -89037882 - ORR1C1-int LTR MaLR 0 1509 878 7 1069 481 163 11 0 chr5 63499360 63499452 -89037807 - ORR1C1-int LTR MaLR -1416 93 1 7 1069 2609 158 77 4 chr5 63499462 63499982 -89037277 + L1_Mur3 LINE L1 2266 2823 -3057 7 1069 344 159 43 0 chr5 63500135 63500204 -89037055 + L1_Mur3 LINE L1 2535 2606 -3274 1 1069 1379 193 48 18 chr5 63500264 63500597 -89036662 + L1_Mur3 LINE L1 2831 3173 -2707 1 1069 4410 228 38 22 chr5 63500591 63501666 -89035593 + Lx7 LINE L1 6587 7678 -18 2 1069 26 0 0 0 chr5 63501813 63501839 -89035420 + AT_rich Low_complexity Low_complexity 1 26 0 3 1069 233 442 18 0 chr5 63502508 63502621 -89034638 - MLT1K LTR MaLR -325 270 156 4 1069 805 218 24 0 chr5 63503313 63503524 -89033735 - L1_Mur3 LINE L1 -2446 3434 3219 5 1069 4413 163 24 13 chr5 63503547 63504305 -89032954 - Lx4A LINE L1 -3 7055 6290 6 1069 3344 124 52 2 chr5 63504315 63504849 -89032410 + L1_Mur2 LINE L1 5117 5677 -200 7 1069 1953 176 239 45 chr5 63504844 63505603 -89031656 - L1_Mur3 LINE L1 -2643 3237 2332 5 1069 743 167 97 32 chr5 63505615 63505749 -89031510 + L1_Mur3 LINE L1 2994 3126 -2754 8 1069 192 77 0 0 chr5 63505749 63505775 -89031484 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 9 1069 743 167 97 32 chr5 63505775 63505856 -89031403 + L1_Mur3 LINE L1 3127 3222 -2658 8 1069 2255 82 82 0 chr5 63506631 63506959 -89030300 - IAPEY2_LTR LTR ERVK -2 355 1 1 1069 257 27 54 0 chr5 63507056 63507093 -89030166 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1069 272 49 0 47 chr5 63507384 63507427 -89029832 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1 1069 5876 60 0 9 chr5 63507429 63508174 -89029085 - L1_Mus1 LINE L1 -11 6556 5819 1 1069 255 31 0 0 chr5 63508556 63508588 -89028671 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1069 231 128 0 0 chr5 63508606 63508645 -89028614 - Lx4A LINE L1 -3 7055 7017 1 1069 346 330 38 47 chr5 63508680 63508893 -89028366 + Lx9 LINE L1 6330 6540 -1104 1 1069 2018 325 49 41 chr5 63509176 63510074 -89027185 + Lx9 LINE L1 6534 7438 -206 1 1069 510 114 0 0 chr5 63510124 63510203 -89027056 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1069 270 0 0 0 chr5 63510714 63510744 -89026515 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1069 289 200 0 66 chr5 63510753 63510844 -89026415 + (CAGAGA)n Simple_repeat Simple_repeat 2 86 0 1 1069 441 291 108 0 chr5 63510905 63511063 -89026196 - Lx9 LINE L1 -216 7428 7254 2 1069 33 0 0 0 chr5 63511606 63511639 -89025620 + AT_rich Low_complexity Low_complexity 1 33 0 2 1069 180 97 0 0 chr5 63511839 63511870 -89025389 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1069 216 0 0 0 chr5 63512488 63512512 -89024747 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1069 351 0 0 0 chr5 63513417 63513456 -89023803 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1069 186 71 0 0 chr5 63513813 63513841 -89023418 + (TTATG)n Simple_repeat Simple_repeat 5 32 0 2 1069 1217 231 205 8 chr5 63514183 63514559 -89022700 - Lx6 LINE L1 0 7460 7011 2 1069 49 18 0 0 chr5 63515376 63515432 -89021827 + AT_rich Low_complexity Low_complexity 1 56 0 2 1069 1344 214 36 10 chr5 63515501 63515803 -89021456 + Lx9 LINE L1 6561 6870 -774 2 1069 2735 56 0 32 chr5 63515819 63515963 -89021296 + IAPEY2_LTR LTR ERVK 1 144 -213 2 1069 2174 68 10 3 chr5 63515963 63516260 -89020999 - L1Md_F2 LINE L1 -2 6580 6282 3 1069 2735 56 0 32 chr5 63516260 63516484 -89020775 + IAPEY2_LTR LTR ERVK 145 357 0 2 1069 1084 103 0 0 chr5 63516511 63516657 -89020602 - B1_Mus1 SINE Alu 0 148 3 3 1069 2701 255 15 42 chr5 63516657 63517461 -89019798 + Lx9 LINE L1 6863 7644 0 2 1069 2826 276 69 34 chr5 63517480 63518145 -89019114 - Lx9 LINE L1 -20 7624 6935 3 1069 2128 190 36 17 chr5 63518145 63518558 -89018701 + MTC LTR MaLR 1 421 0 3 1069 2826 276 69 34 chr5 63518558 63518953 -89018306 - Lx9 LINE L1 -710 6934 6527 3 1069 2039 89 0 0 chr5 63518957 63519228 -89018031 - Lx3A LINE L1 -1122 5859 5589 3 1069 7970 53 5 2 chr5 63519228 63520447 -89016812 - L1Md_F2 LINE L1 0 6582 5414 3 1069 306 227 40 66 chr5 63520739 63520794 -89016465 - Lx9 LINE L1 -6 7638 7581 3 1069 1027 174 50 23 chr5 63520794 63521012 -89016247 + URR1A DNA MER1_type 1 224 -2 3 1069 306 227 40 66 chr5 63521012 63521107 -89016152 - Lx9 LINE L1 -64 7580 7492 3 1069 26 30 0 0 chr5 63521110 63521143 -89016116 + AT_rich Low_complexity Low_complexity 1 33 0 3 1069 421 204 32 0 chr5 63521166 63521259 -89016000 - Lx9 LINE L1 -466 7178 7083 3 1069 3168 216 86 11 chr5 63521282 63521495 -89015764 + Lx9 LINE L1 6764 6976 -668 3 1069 3322 53 0 0 chr5 63521495 63521891 -89015368 + MTA_Mm LTR MaLR 1 396 0 4 1069 3168 216 86 11 chr5 63521891 63522348 -89014911 + Lx9 LINE L1 6977 7493 -151 3 1069 522 0 0 0 chr5 63522348 63522406 -89014853 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 4 1069 338 91 0 18 chr5 63522406 63522462 -89014797 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1069 3168 216 86 11 chr5 63522462 63522608 -89014651 + Lx9 LINE L1 7494 7642 -2 3 1069 24 0 0 0 chr5 63523312 63523336 -89013923 + AT_rich Low_complexity Low_complexity 1 24 0 4 1069 595 312 117 51 chr5 63523394 63523803 -89013456 - MLT1D LTR MaLR -69 436 1 4 1069 228 238 60 0 chr5 63526113 63526197 -89011062 + Lx9 LINE L1 7390 7478 -166 4 1069 555 29 0 0 chr5 63526197 63526266 -89010993 + (CA)n Simple_repeat Simple_repeat 2 70 0 4 1069 249 33 0 0 chr5 63527429 63527459 -89009800 + (TTA)n Simple_repeat Simple_repeat 2 31 0 4 1069 197 33 0 32 chr5 63527979 63528010 -89009249 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1069 1046 242 106 18 chr5 63528050 63528332 -89008927 - Lx2B LINE L1 0 7000 6694 4 1069 362 315 6 70 chr5 63528332 63528489 -89008770 + B1_Mur2 SINE Alu 3 149 0 5 1069 378 0 0 0 chr5 63529150 63529192 -89008067 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1069 286 305 102 14 chr5 63529439 63529544 -89007715 + RMER17D2 LTR ERVK 162 282 -527 5 1069 1398 46 0 0 chr5 63529544 63529718 -89007541 + (TTCTCC)n Simple_repeat Simple_repeat 6 179 0 5 1069 286 305 102 14 chr5 63529718 63529895 -89007364 + RMER17D2 LTR ERVK 283 469 -340 5 1069 1053 63 0 0 chr5 63529903 63530045 -89007214 + (GA)n Simple_repeat Simple_repeat 2 143 0 5 1069 615 27 0 0 chr5 63530377 63530450 -89006809 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 5 1069 1182 112 0 0 chr5 63530459 63530637 -89006622 + (TTCC)n Simple_repeat Simple_repeat 1 178 0 5 1069 218 190 0 23 chr5 63530637 63530670 -89006589 + polypyrimidine Low_complexity Low_complexity 4 36 0 5 1069 1401 286 77 32 chr5 63530673 63531430 -89005829 - Lx2B LINE L1 -1113 5884 5060 4 1069 21 71 0 0 chr5 63531657 63531699 -89005560 + AT_rich Low_complexity Low_complexity 1 42 0 5 1069 30 49 0 16 chr5 63531952 63531976 -89005283 + AT_rich Low_complexity Low_complexity 1 24 0 5 1069 6757 29 0 0 chr5 63531976 63532765 -89004494 - L1Md_T LINE L1 -11 6571 5783 6 1069 30 49 0 16 chr5 63532765 63532802 -89004457 + AT_rich Low_complexity Low_complexity 1 37 0 6 1069 228 67 0 0 chr5 63532883 63532913 -89004346 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1069 360 337 127 98 chr5 63533828 63534308 -89002951 - MLT1F2 LTR MaLR -1 559 66 6 1069 236 151 38 0 chr5 63535557 63535626 -89001633 + (TTTG)n Simple_repeat Simple_repeat 1 71 0 6 1069 442 326 53 37 chr5 63535728 63535973 -89001286 + L2 LINE L2 2107 2355 -1064 6 1069 240 254 26 60 chr5 63536490 63536607 -89000652 - L1MA9 LINE L1 -120 6192 6080 6 1069 397 259 0 0 chr5 63536645 63536726 -89000533 + Lx9 LINE L1 6457 6537 -1107 6 1069 21 0 0 0 chr5 63536763 63536784 -89000475 + AT_rich Low_complexity Low_complexity 1 21 0 6 1069 7184 112 31 6 chr5 63536784 63537885 -88999374 - Lx3_Mus LINE L1 -8 7001 5874 6 1069 10351 75 17 8 chr5 63537891 63539353 -88997906 + L1_Mur1 LINE L1 4144 5619 -267 7 1069 503 63 0 0 chr5 63539330 63539393 -88997866 + L1Md_F2 LINE L1 5524 5586 -297 7 1069 7982 50 7 0 chr5 63539393 63540466 -88996793 + L1Md_F2 LINE L1 5587 6582 0 7 1069 5604 85 1 1 chr5 63540466 63541233 -88996026 + L1_Mm LINE L1 4537 5303 -580 7 1069 33104 83 3 37 chr5 63541234 63546407 -88990852 + L1Md_F3 LINE L1 487 5586 -297 7 1069 7870 61 1 0 chr5 63546407 63547402 -88989857 + L1Md_F2 LINE L1 5587 6582 0 7 1069 33104 71 5 14 chr5 63547402 63547934 -88989325 + L1Md_F3 LINE L1 5587 6010 -574 7 1069 261 382 49 0 chr5 63549062 63549164 -88988095 + Lx8 LINE L1 7179 7285 -188 7 1069 472 30 30 0 chr5 63549272 63549338 -88987921 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1069 1016 146 6 0 chr5 63549890 63550068 -88987191 + CT-rich Low_complexity Low_complexity 2 180 0 7 1069 311 0 0 25 chr5 63550068 63550108 -88987151 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 7 1069 1133 270 97 12 chr5 63550135 63550465 -88986794 + MTE2b LTR MaLR 20 377 -2 7 1069 28 29 0 0 chr5 63550914 63550949 -88986310 + AT_rich Low_complexity Low_complexity 1 35 0 8 1069 321 328 11 22 chr5 63551370 63551548 -88985711 + CT-rich Low_complexity Low_complexity 1 176 0 8 1069 606 324 141 45 chr5 63551754 63551869 -88985390 - MER67D LTR ERV1 0 514 379 8 1069 2463 11 0 0 chr5 63551869 63552147 -88985112 - L1Md_A LINE L1 0 6582 6305 8 1069 606 324 141 45 chr5 63552147 63552500 -88984759 - MER67D LTR ERV1 -136 378 1 8 1069 309 267 11 22 chr5 63552594 63552686 -88984573 + B4A SINE B4 194 284 -8 8 1069 239 346 47 19 chr5 63554050 63554156 -88983103 + L2a LINE L2 3317 3425 -1 8 1069 234 0 0 0 chr5 63554413 63554439 -88982820 + (TAA)n Simple_repeat Simple_repeat 2 27 0 8 1069 180 311 39 39 chr5 63555863 63555940 -88981319 + MIRb SINE MIR 93 169 -99 8 1069 794 188 19 0 chr5 63556634 63556788 -88980471 + L1_Mus3 LINE L1 6460 6616 -22 8 1069 1670 160 80 6 chr5 63556796 63557172 -88980087 - Lx2B LINE L1 -665 6332 5903 8 1069 224 205 0 0 chr5 63557383 63557422 -88979837 + polypyrimidine Low_complexity Low_complexity 4 42 0 9 1069 227 171 0 0 chr5 63557534 63557575 -88979684 - U2 snRNA snRNA -147 41 1 9 1069 864 290 88 37 chr5 63557812 63558163 -88979096 + Lx8 LINE L1 7095 7463 -10 9 1069 21 0 0 0 chr5 63558670 63558691 -88978568 + AT_rich Low_complexity Low_complexity 1 21 0 9 1069 310 77 0 0 chr5 63558849 63558888 -88978371 + ORR1A0 LTR MaLR 139 177 -169 9 1069 637 158 57 16 chr5 63559000 63559122 -88978137 - Lx7 LINE L1 -740 6956 6830 9 1069 23 0 0 0 chr5 63559165 63559188 -88978071 + AT_rich Low_complexity Low_complexity 1 23 0 9 1069 1669 244 21 60 chr5 63559450 63559886 -88977373 - MTD LTR MaLR 0 419 1 9 1069 1351 54 0 6 chr5 63559961 63560129 -88977130 - L1_Mus2 LINE L1 -100 6466 6300 9 1069 582 132 50 0 chr5 63560129 63560250 -88977009 + L1_Mus3 LINE L1 6510 6636 -2 9 1069 187 361 41 57 chr5 63560348 63560592 -88976667 - L2 LINE L2 -414 3005 2766 1 1069 24 53 0 0 chr5 63561478 63561516 -88975743 + AT_rich Low_complexity Low_complexity 1 38 0 1 1069 237 379 17 0 chr5 63561584 63561700 -88975559 - Cheshire DNA MER1_type -2152 268 151 1 1069 557 301 56 67 chr5 63561775 63562042 -88975217 + Charlie8 DNA MER1_type 49 312 -2116 1 1069 609 193 120 0 chr5 63563412 63563562 -88973697 - Lx9 LINE L1 -154 7490 7323 1 1069 207 100 0 0 chr5 63564026 63564056 -88973203 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1069 210 118 0 0 chr5 63564610 63564644 -88972615 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1 1069 2654 236 96 70 chr5 63565616 63565821 -88971438 - RLTR25A LTR ERVK -6 1022 797 1 1069 968 107 6 29 chr5 63565821 63565994 -88971265 - Lx2 LINE L1 0 6997 6829 1 1069 2876 186 71 30 chr5 63565994 63566784 -88970475 - RLTR25A LTR ERVK -232 796 1 1 1069 286 307 0 9 chr5 63566930 63567045 -88970214 + L1ME1 LINE L1 744 857 -5543 1 1069 639 297 121 18 chr5 63567825 63568339 -88968920 + L1ME1 LINE L1 5510 6076 -276 1 1069 1045 208 18 23 chr5 63568339 63568556 -88968703 + ORR1C1 LTR MaLR 1 216 -162 1 1069 257 152 43 0 chr5 63568950 63568996 -88968263 + Lx9 LINE L1 7407 7454 -190 1 1069 419 264 128 33 chr5 63569165 63569345 -88967914 + B3A SINE B2 2 198 0 1 1070 1133 212 20 3 chr5 63570654 63570947 -88966312 - Lx9 LINE L1 -1 7643 7346 1 1070 231 340 40 60 chr5 63571918 63572068 -88965191 + B4A SINE B4 10 156 -136 1 1070 315 0 0 0 chr5 63572103 63572138 -88965121 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 1 1070 752 322 21 0 chr5 63572178 63572420 -88964839 + Lx8 LINE L1 6374 6620 -853 1 1070 279 136 0 0 chr5 63572448 63572507 -88964752 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1070 923 304 50 29 chr5 63572683 63573062 -88964197 + Lx8 LINE L1 6096 6482 -991 1 1070 21 36 0 0 chr5 63573488 63573516 -88963743 + AT_rich Low_complexity Low_complexity 1 28 0 1 1070 251 274 42 10 chr5 63574441 63574537 -88962722 - L1MC4a LINE L1 -360 7635 7537 1 1070 282 345 27 7 chr5 63574849 63574995 -88962264 - L1MC4a LINE L1 -1085 6797 6649 1 1070 185 255 19 38 chr5 63576088 63576141 -88961118 + MIR SINE MIR 39 90 -172 1 1070 2776 108 10 5 chr5 63576634 63577035 -88960224 + RLTR9D LTR ERVK 1 403 0 1 1070 529 27 27 0 chr5 63577124 63577199 -88960060 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 1 1070 553 295 13 20 chr5 63577436 63577588 -88959671 + ID_B1 SINE B4 74 224 0 1 1070 3460 20 2 0 chr5 63577814 63578209 -88959050 + MTA_Mm LTR MaLR 1 396 0 1 1070 4175 224 121 29 chr5 63578570 63579609 -88957650 + Lx9 LINE L1 6288 7418 -226 1 1070 468 51 0 0 chr5 63579609 63579668 -88957591 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1070 4175 224 121 29 chr5 63579668 63579856 -88957403 + Lx9 LINE L1 7419 7628 -16 1 1070 204 40 0 0 chr5 63579867 63579892 -88957367 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1070 206 0 0 65 chr5 63580044 63580075 -88957184 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1070 2366 77 3 9 chr5 63580078 63580405 -88956854 - L1Md_F2 LINE L1 -4 6578 6254 1 1070 315 150 0 0 chr5 63580673 63580733 -88956526 + (A)n Simple_repeat Simple_repeat 1 60 0 1 1070 25 51 0 0 chr5 63581006 63581045 -88956214 + AT_rich Low_complexity Low_complexity 1 39 0 1 1070 21 0 0 0 chr5 63581543 63581564 -88955695 + AT_rich Low_complexity Low_complexity 1 21 0 1 1070 25 31 0 0 chr5 63581838 63581870 -88955389 + AT_rich Low_complexity Low_complexity 1 32 0 1 1070 1747 82 12 0 chr5 63581964 63582208 -88955051 - L1_Mus4 LINE L1 -713 5923 5677 1 1070 5320 171 25 5 chr5 63582189 63583183 -88954076 + L1_Mm LINE L1 4623 5636 -247 1 1070 24 32 0 0 chr5 63583300 63583331 -88953928 + AT_rich Low_complexity Low_complexity 1 31 0 1 1070 235 373 0 0 chr5 63583337 63583412 -88953847 + ID4_ SINE ID 1 75 -8 1 1070 1256 67 0 11 chr5 63583575 63583756 -88953503 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1 1070 686 96 0 9 chr5 63583774 63583879 -88953380 + (GGAA)n Simple_repeat Simple_repeat 3 106 0 1 1070 318 98 0 0 chr5 63584059 63584110 -88953149 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1070 2297 119 3 30 chr5 63584232 63584595 -88952664 - Lx LINE L1 -7 6647 6295 1 1070 22 56 0 0 chr5 63585306 63585342 -88951917 + AT_rich Low_complexity Low_complexity 1 36 0 1 1070 729 82 0 0 chr5 63585527 63585637 -88951622 + (CAGA)n Simple_repeat Simple_repeat 2 111 0 1 1070 228 143 0 0 chr5 63585777 63585819 -88951440 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1070 242 295 64 0 chr5 63585854 63585932 -88951327 + RSINE1 SINE B4 46 128 -37 1 1070 198 71 0 0 chr5 63585958 63585986 -88951273 + (TAA)n Simple_repeat Simple_repeat 3 30 0 1 1070 184 322 91 52 chr5 63586533 63586687 -88950572 - MER5A DNA MER1_type -26 163 4 1 1070 851 79 0 41 chr5 63588206 63588351 -88948908 - Lx LINE L1 -7 6647 6509 1 1070 1211 176 56 0 chr5 63588353 63588569 -88948690 + Lx LINE L1 6249 6476 -178 1 1070 299 402 34 24 chr5 63588700 63588909 -88948350 - MLT1F2 LTR MaLR -1 559 349 1 1070 489 301 31 19 chr5 63588979 63589138 -88948121 - MLT1F2 LTR MaLR -323 237 77 1 1070 1128 83 0 0 chr5 63589223 63589368 -88947891 - B1_Mus2 SINE Alu -2 145 1 1 1070 292 314 97 23 chr5 63589556 63589732 -88947527 + MER90a LTR ERV1 3 191 -423 1 1070 252 0 0 0 chr5 63589996 63590024 -88947235 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1070 276 288 0 0 chr5 63590398 63590464 -88946795 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1070 1084 97 7 0 chr5 63590882 63591027 -88946232 + B1_Mus2 SINE Alu 2 147 0 1 1070 224 77 26 0 chr5 63591027 63591066 -88946193 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1 1070 300 119 0 0 chr5 63591291 63591350 -88945909 + (TTTA)n Simple_repeat Simple_repeat 4 62 0 1 1070 1478 285 17 75 chr5 63593009 63593541 -88943718 + Lx5 LINE L1 6550 7050 0 1 1070 4039 74 0 0 chr5 63593613 63594137 -88943122 - L1_Mus4 LINE L1 -525 6111 5588 1 1070 409 187 65 21 chr5 63594130 63594223 -88943036 - L1_Mur2 LINE L1 -686 5191 5095 1 1070 2960 106 49 2 chr5 63594225 63594677 -88942582 + L1_Mus4 LINE L1 6159 6631 -5 1 1070 386 293 121 71 chr5 63595332 63595413 -88941846 - MER2 DNA MER2_type -93 252 163 1 1070 582 15 0 0 chr5 63595413 63595480 -88941779 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 1 1070 386 293 121 71 chr5 63595480 63595637 -88941622 - MER2 DNA MER2_type -183 162 2 1 1070 689 0 12 0 chr5 63595978 63596059 -88941200 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 1 1070 500 305 45 45 chr5 63596252 63596475 -88940784 - MER57F LTR ERV1 -204 232 10 1 1070 1766 228 31 8 chr5 63597203 63597588 -88939671 + ORR1B1 LTR MaLR 1 394 0 1 1070 22 0 0 0 chr5 63597612 63597634 -88939625 + AT_rich Low_complexity Low_complexity 1 22 0 1 1070 315 161 0 0 chr5 63598610 63598666 -88938593 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1070 38 0 0 0 chr5 63598687 63598725 -88938534 + AT_rich Low_complexity Low_complexity 1 38 0 1 1070 231 221 122 31 chr5 63598991 63599089 -88938170 - Lx9 LINE L1 -1726 5918 5812 1 1070 284 325 119 0 chr5 63599422 63599548 -88937711 + B1F SINE Alu 1 141 -8 1 1070 1357 261 18 70 chr5 63599577 63599736 -88937523 + ORR1D1 LTR MaLR 1 145 -229 1 1070 867 78 7 21 chr5 63599736 63599881 -88937378 - L1_Mus2 LINE L1 0 6566 6424 1 1070 1357 261 18 70 chr5 63599881 63600108 -88937151 + ORR1D1 LTR MaLR 146 367 -7 1 1070 180 0 0 0 chr5 63600220 63600240 -88937019 + (TAAG)n Simple_repeat Simple_repeat 1 20 0 1 1070 378 307 27 48 chr5 63600787 63600975 -88936284 + MIRb SINE MIR 16 199 -69 1 1070 423 340 53 21 chr5 63601258 63601447 -88935812 - ORR1E LTR MaLR -164 195 1 1 1070 21 36 0 0 chr5 63601691 63601719 -88935540 + AT_rich Low_complexity Low_complexity 1 28 0 1 1070 5552 92 4 17 chr5 63601879 63602698 -88934561 - Lx3_Mus LINE L1 -384 5502 4695 1 1070 9831 85 2 40 chr5 63602697 63603156 -88934103 + Lx3_Mus LINE L1 5481 5917 -1092 1 1070 1079 129 6 0 chr5 63603156 63603334 -88933925 + (GGA)n Simple_repeat Simple_repeat 2 180 0 1 1070 770 43 35 0 chr5 63603339 63603454 -88933805 + (GAAA)n Simple_repeat Simple_repeat 3 121 0 1 1070 9831 95 22 8 chr5 63603454 63604517 -88932742 + Lx3_Mus LINE L1 5921 7007 -2 1 1070 1318 238 68 34 chr5 63606596 63606960 -88930299 + MTD LTR MaLR 3 362 -57 1 1070 282 31 0 0 chr5 63606960 63606992 -88930267 + L1Md_F2 LINE L1 5555 5586 -297 1 1070 8026 48 2 0 chr5 63606992 63607974 -88929285 + L1Md_F2 LINE L1 5587 6570 -12 1 1070 1351 105 0 21 chr5 63608384 63608578 -88928681 + B2_Mm2 SINE B2 2 191 -4 1 1070 748 322 26 56 chr5 63608843 63609234 -88928025 - MTEa LTR MaLR 0 379 1 1 1070 21 36 0 0 chr5 63609614 63609642 -88927617 + AT_rich Low_complexity Low_complexity 1 28 0 1 1070 357 43 0 0 chr5 63610070 63610117 -88927142 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1070 795 315 60 58 chr5 63610966 63611418 -88925841 - Lx5 LINE L1 -335 6715 6263 1 1070 890 281 151 40 chr5 63611442 63612232 -88925027 + L1MC1 LINE L1 4107 4983 -1163 1 1070 1320 233 183 61 chr5 63612283 63613004 -88924255 + Lx3_Mus LINE L1 3 819 -6165 1 1070 4288 100 9 1 chr5 63613001 63613651 -88923608 + Lx3_Mus LINE L1 1264 1918 -3968 1 1070 3039 76 179 0 chr5 63613647 63614201 -88923058 + Lx3_Mus LINE L1 5196 5922 -1087 1 1070 7274 79 10 1 chr5 63614231 63615475 -88921784 + L1_Mus1 LINE L1 5312 6566 -1 1 1070 4299 126 58 4 chr5 63615473 63616203 -88921056 + Lx3_Mus LINE L1 5775 6540 -469 1 1070 2807 70 2 65 chr5 63616205 63616619 -88920640 - RLTR10 LTR ERVK -2 388 1 1 1070 8911 13 0 0 chr5 63616619 63617616 -88919643 - RLTR10-int LTR ERVK -1 1986 990 1 1070 371 245 64 32 chr5 63617698 63617854 -88919405 - RLTR10-int LTR ERVK -5987 1594 1434 1 1070 8028 33 8 0 chr5 63617897 63618848 -88918411 - RLTR10-int LTR ERVK -995 992 34 1 1070 2848 78 5 33 chr5 63618855 63619254 -88918005 - RLTR10 LTR ERVK -2 388 1 1 1070 2978 124 17 4 chr5 63619254 63619714 -88917545 + Lx3_Mus LINE L1 6535 7000 -9 1 1070 574 259 18 6 chr5 63619784 63619951 -88917308 + L1MC1 LINE L1 5107 5275 -871 1 1070 289 270 11 33 chr5 63619997 63620089 -88917170 + L1MA8 LINE L1 5833 5922 -369 1 1070 380 308 131 17 chr5 63620110 63620285 -88916974 + RMER30 DNA MER1_type 8 202 0 1 1070 1597 74 14 0 chr5 63620365 63620581 -88916678 + L1Md_F2 LINE L1 6361 6579 -3 1 1070 281 299 80 11 chr5 63620721 63620941 -88916318 + L1MC1 LINE L1 5323 5569 -775 1 1070 305 250 65 0 chr5 63621014 63621138 -88916121 + Lx9 LINE L1 7509 7640 -4 1 1070 267 351 29 43 chr5 63621155 63621295 -88915964 - ID_B1 SINE B4 -13 211 74 1 1070 838 283 68 18 chr5 63621328 63621709 -88915550 + L1MC1 LINE L1 5612 6011 -322 1 1070 240 188 21 0 chr5 63622101 63622149 -88915110 - MTC LTR MaLR -49 372 324 2 1070 2474 46 0 3 chr5 63622170 63622478 -88914781 - L1Md_F3 LINE L1 -14 6570 6264 2 1070 475 139 0 61 chr5 63622876 63622892 -88914367 - Lx9 LINE L1 -1 7643 7631 2 1070 2983 75 2 5 chr5 63622892 63623293 -88913966 + MTB LTR MaLR 1 400 0 2 1070 475 139 0 61 chr5 63623293 63623391 -88913868 - Lx9 LINE L1 -14 7630 7536 2 1070 378 0 0 0 chr5 63623393 63623435 -88913824 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1070 492 191 9 19 chr5 63623435 63623542 -88913717 - Lx9 LINE L1 -620 7024 6919 2 1070 33127 77 2 15 chr5 63623546 63628697 -88908562 + L1Md_F2 LINE L1 505 5585 -298 2 1070 7854 52 5 0 chr5 63628698 63629677 -88907582 + L1Md_F2 LINE L1 5587 6570 -12 2 1070 1666 272 39 26 chr5 63629678 63630145 -88907114 - Lx9 LINE L1 -709 6935 6463 2 1070 797 117 14 0 chr5 63630166 63630311 -88906948 + (TAGA)n Simple_repeat Simple_repeat 2 148 0 2 1070 254 229 0 0 chr5 63630535 63630583 -88906676 + 5S rRNA rRNA 1 48 -73 2 1070 348 43 0 0 chr5 63631830 63631876 -88905383 + (GAAAA)n Simple_repeat Simple_repeat 5 50 0 2 1070 1037 113 6 0 chr5 63631878 63632055 -88905204 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 2 1070 282 56 0 0 chr5 63632165 63632201 -88905058 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1070 429 232 35 18 chr5 63633285 63633399 -88903860 - RMER15 LTR ERVL -71 504 389 2 1070 234 0 0 0 chr5 63633518 63633544 -88903715 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1070 225 341 103 59 chr5 63634131 63634471 -88902788 + LTR48 LTR ERV1 412 766 -21 2 1070 701 299 266 2 chr5 63634712 63635221 -88902038 - L1MA6 LINE L1 -356 5944 5303 2 1070 204 40 0 0 chr5 63635293 63635318 -88901941 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1070 2922 41 0 22 chr5 63636217 63636247 -88901012 + L1Md_F2 LINE L1 5224 5253 -630 2 1070 1582 27 21 0 chr5 63636247 63636435 -88900824 + B2_Mm1t SINE B2 2 193 0 2 1070 2922 41 0 22 chr5 63636435 63636775 -88900484 + L1Md_F2 LINE L1 5254 5586 -297 2 1070 8148 47 3 0 chr5 63636775 63637767 -88899492 + L1Md_F2 LINE L1 5587 6581 -1 2 1070 30 27 0 0 chr5 63637882 63637919 -88899340 + AT_rich Low_complexity Low_complexity 1 37 0 2 1070 3422 121 11 24 chr5 63637919 63638461 -88898798 - Lx3B LINE L1 0 6973 6439 2 1070 21 36 0 0 chr5 63638737 63638765 -88898494 + AT_rich Low_complexity Low_complexity 1 28 0 2 1070 1110 264 138 9 chr5 63639154 63639268 -88897991 - MTD LTR MaLR -30 389 248 2 1070 248 0 31 0 chr5 63639268 63639300 -88897959 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1070 1110 264 138 9 chr5 63639300 63639525 -88897734 - MTD LTR MaLR -172 247 7 2 1070 204 361 50 57 chr5 63639993 63640134 -88897125 + L2a LINE L2 3264 3403 -23 2 1070 1355 96 5 0 chr5 63640805 63640993 -88896266 + B2_Mm1a SINE B2 4 192 -1 2 1070 1167 75 0 0 chr5 63640995 63641142 -88896117 + B1_Mus2 SINE Alu 1 147 0 2 1070 221 239 0 0 chr5 63641142 63641188 -88896071 + GA-rich Low_complexity Low_complexity 3 48 0 2 1070 3845 187 191 16 chr5 63642229 63643137 -88894122 - RLTR25A LTR ERVK 0 1103 38 2 1070 369 0 0 0 chr5 63643228 63643269 -88893990 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1070 22 0 0 0 chr5 63643498 63643520 -88893739 + AT_rich Low_complexity Low_complexity 1 22 0 2 1070 30 59 0 14 chr5 63643559 63643592 -88893667 + AT_rich Low_complexity Low_complexity 1 33 0 2 1070 6858 45 2 0 chr5 63643592 63644430 -88892829 - L1Md_F2 LINE L1 0 6582 5743 2 1070 30 59 0 14 chr5 63644430 63644465 -88892794 + AT_rich Low_complexity Low_complexity 1 35 0 2 1070 1137 88 0 0 chr5 63644465 63644612 -88892647 - B1_Mus2 SINE Alu 0 147 1 2 1070 242 226 0 36 chr5 63644903 63644958 -88892301 + MLT1C LTR MaLR 4 56 -411 2 1070 363 282 0 0 chr5 63645074 63645223 -88892036 + CT-rich Low_complexity Low_complexity 3 151 0 2 1070 3860 158 40 11 chr5 63645360 63646066 -88891193 - Lx4A LINE L1 -452 6606 5911 2 1070 329 214 136 0 chr5 63646065 63646168 -88891091 + Lx4A LINE L1 6940 7056 -2 2 1070 189 0 0 0 chr5 63646417 63646438 -88890821 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1070 303 339 18 106 chr5 63646805 63647023 -88890236 + MIR SINE MIR 52 250 -12 2 1070 252 285 2 50 chr5 63647264 63647333 -88889926 - MIRb SINE MIR -194 74 5 2 1070 402 21 0 0 chr5 63647793 63647840 -88889419 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1070 22 35 0 0 chr5 63647953 63647982 -88889277 + AT_rich Low_complexity Low_complexity 1 29 0 2 1070 850 334 130 39 chr5 63648229 63648923 -88888336 + Lx8 LINE L1 6574 7330 -143 2 1070 338 355 31 21 chr5 63649276 63649469 -88887790 + L1MCa LINE L1 255 449 -5974 2 1070 312 354 94 77 chr5 63649670 63650074 -88887185 + L1MCa LINE L1 760 1170 -5253 2 1070 226 274 123 0 chr5 63650236 63650309 -88886950 + ID2 SINE ID 2 83 0 2 1070 370 320 98 40 chr5 63650343 63650768 -88886491 + L1MCa LINE L1 1521 2047 -4990 2 1070 351 0 0 0 chr5 63650848 63650887 -88886372 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1070 3788 125 14 2 chr5 63650898 63651600 -88885659 - L1_Mus4 LINE L1 -694 5942 5232 2 1070 2031 128 12 6 chr5 63651600 63651923 -88885336 + Lx LINE L1 6324 6648 -6 2 1070 254 252 56 37 chr5 63652073 63652180 -88885079 - L1M4 LINE L1 -1190 4956 4848 2 1070 982 246 160 30 chr5 63652312 63652643 -88884616 + ORR1D1 LTR MaLR 1 374 0 2 1070 546 356 53 25 chr5 63652865 63653147 -88884112 + LTR53 LTR ERVL 140 429 -90 2 1070 659 79 0 0 chr5 63653164 63653253 -88884006 + B2_Mm2 SINE B2 4 92 -103 2 1070 408 71 0 0 chr5 63653509 63653565 -88883694 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1070 705 306 97 20 chr5 63655584 63655884 -88881375 + ORR1E LTR MaLR 5 327 -32 2 1070 374 250 19 77 chr5 63656715 63656819 -88880440 + B1F SINE Alu 13 110 -39 2 1070 279 316 85 85 chr5 63658651 63658862 -88878397 + MLT1C LTR MaLR 55 265 -202 2 1070 21 71 0 0 chr5 63659509 63659551 -88877708 + AT_rich Low_complexity Low_complexity 1 42 0 2 1070 435 68 0 0 chr5 63659742 63659801 -88877458 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2 1070 8358 91 16 44 chr5 63659824 63661100 -88876159 - Lx3_Mus LINE L1 -179 6830 5590 2 1070 692 348 39 28 chr5 63662750 63663004 -88874255 - B4A SINE B4 -33 259 3 2 1070 2134 101 16 0 chr5 63663649 63663957 -88873302 - Lx3A LINE L1 -6 6975 6663 2 1070 289 333 31 39 chr5 63664381 63664509 -88872750 + MTEa LTR MaLR 250 376 -3 2 1070 577 304 60 22 chr5 63664851 63665180 -88872079 - MTD LTR MaLR -14 405 52 2 1070 1234 278 81 69 chr5 63665752 63666320 -88870939 + RMER15 LTR ERVL 1 575 0 2 1070 334 270 0 0 chr5 63666810 63666884 -88870375 - Lx9 LINE L1 -1155 6489 6416 2 1070 514 261 107 14 chr5 63667166 63667348 -88869911 - Lx9 LINE L1 -1717 5927 5732 2 1070 923 224 19 0 chr5 63667363 63667568 -88869691 - Lx4A LINE L1 0 7058 6850 2 1070 1234 137 101 0 chr5 63667567 63667794 -88869465 + Lx LINE L1 6405 6654 0 2 1070 2345 145 19 3 chr5 63667805 63668165 -88869094 - Lx4A LINE L1 -211 6847 6482 2 1070 466 212 61 9 chr5 63668170 63668284 -88868975 - Lx9 LINE L1 -126 5721 5602 2 1070 1603 282 79 73 chr5 63668326 63669235 -88868024 + Lx9 LINE L1 6517 7431 -213 2 1070 189 0 0 0 chr5 63669254 63669275 -88867984 + (TC)n Simple_repeat Simple_repeat 2 22 0 2 1070 180 0 0 0 chr5 63669275 63669294 -88867965 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 1070 355 246 80 87 chr5 63669564 63669702 -88867557 + B4 SINE B4 2 138 -154 2 1070 314 316 12 43 chr5 63669797 63669959 -88867300 + Lx9 LINE L1 6894 7050 -594 2 1070 278 328 84 63 chr5 63671382 63671525 -88865734 + RSINE1 SINE B4 3 148 -17 2 1070 524 15 0 15 chr5 63671536 63671602 -88865657 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1070 566 294 42 0 chr5 63671787 63671930 -88865329 + B1_Mur1 SINE Alu 1 149 0 2 1070 240 298 89 47 chr5 63672188 63672378 -88864881 + ORR1D1 LTR MaLR 174 371 -3 2 1070 897 227 92 8 chr5 63672470 63672710 -88864549 - Lx7 LINE L1 -494 7202 6943 2 1070 750 227 79 35 chr5 63672735 63673050 -88864209 + Lx7 LINE L1 7365 7693 -3 2 1070 318 381 73 10 chr5 63673171 63673375 -88863884 - L1M5 LINE L1 -2040 4106 3890 2 1070 271 224 15 15 chr5 63675515 63675583 -88861676 - MLT1K LTR MaLR -11 584 517 2 1070 432 0 0 0 chr5 63676625 63676673 -88860586 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1070 266 211 28 0 chr5 63677153 63677224 -88860035 + (TA)n Simple_repeat Simple_repeat 2 74 0 2 1070 272 258 0 43 chr5 63677628 63677721 -88859538 + T-rich Low_complexity Low_complexity 1 89 0 2 1070 314 423 45 74 chr5 63677823 63677999 -88859260 - B4 SINE B4 -121 171 1 2 1070 730 30 20 0 chr5 63678260 63678361 -88858898 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 2 1070 210 331 88 20 chr5 63678382 63678530 -88858729 + MIR SINE MIR 91 248 -14 2 1070 202 311 40 26 chr5 63679197 63679273 -88857986 + L2a LINE L2 3343 3419 -7 2 1070 262 232 43 14 chr5 63680400 63680470 -88856789 + Lx9 LINE L1 7120 7191 -453 2 1070 6908 93 14 9 chr5 63680719 63681708 -88855551 - L1_Mus3 LINE L1 -13 6625 5632 2 1070 241 62 0 0 chr5 63682211 63682243 -88855016 - L1_Mm LINE L1 -3487 2396 2365 2 1070 3884 63 45 4 chr5 63682243 63682753 -88854506 + L1Md_F2 LINE L1 6039 6569 -13 2 1070 540 0 0 0 chr5 63682764 63682824 -88854435 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 2 1070 309 33 65 32 chr5 63682890 63682952 -88854307 + (CAGAGA)n Simple_repeat Simple_repeat 1 64 0 2 1070 265 350 62 52 chr5 63683104 63683297 -88853962 + MIRb SINE MIR 68 262 -6 2 1070 22 70 0 0 chr5 63683596 63683639 -88853620 + AT_rich Low_complexity Low_complexity 1 43 0 2 1070 504 48 0 0 chr5 63684773 63684836 -88852423 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1070 4836 72 22 0 chr5 63686672 63687311 -88849948 + L1_Mus1 LINE L1 5911 6563 -4 2 1070 186 305 47 35 chr5 63687839 63687924 -88849335 + MIR SINE MIR 153 238 -24 2 1070 324 222 0 43 chr5 63689934 63690028 -88847231 + Lx6 LINE L1 7331 7420 -40 2 1070 553 330 37 37 chr5 63690315 63690749 -88846510 + L1MA4 LINE L1 5496 5929 -371 3 1070 3081 74 2 23 chr5 63691005 63691433 -88845826 - L1_Mus2 LINE L1 0 6566 6148 3 1070 1734 251 71 90 chr5 63691444 63691990 -88845269 + RMER15 LTR ERVL 3 538 -37 3 1070 360 271 30 83 chr5 63692058 63692191 -88845068 - Lx8 LINE L1 -344 7129 7004 3 1070 317 111 0 0 chr5 63693843 63693888 -88843371 - Lx4B LINE L1 -1209 5849 5805 3 1070 1308 105 8 26 chr5 63693887 63694061 -88843198 + L1_Mur1 LINE L1 5224 5396 -490 3 1070 3933 78 0 0 chr5 63694061 63694571 -88842688 + L1_Mus1 LINE L1 6058 6567 0 3 1070 1308 105 8 26 chr5 63694571 63694630 -88842629 + L1_Mur1 LINE L1 5397 5453 -433 3 1070 608 189 0 0 chr5 63694643 63694775 -88842484 + L1_Mur2 LINE L1 5265 5396 -481 3 1070 1276 70 0 0 chr5 63696680 63696838 -88840421 + L1Md_F2 LINE L1 6221 6378 -204 3 1070 481 256 76 92 chr5 63696841 63697026 -88840233 - B2_Mm2 SINE B2 -8 187 6 3 1070 357 282 18 55 chr5 63697430 63697539 -88839720 + MTEb LTR MaLR 260 364 -15 3 1070 363 211 102 31 chr5 63699388 63699486 -88837773 - RLTR31_Mur LTR ERVK 0 553 449 3 1070 1966 64 0 4 chr5 63699867 63700118 -88837141 - L1_Mus1 LINE L1 0 6567 6318 3 1070 464 32 16 0 chr5 63700572 63700634 -88836625 + (TTG)n Simple_repeat Simple_repeat 3 65 0 3 1070 624 275 54 0 chr5 63700673 63700840 -88836419 - Lx8 LINE L1 -329 7144 6969 3 1070 701 264 0 0 chr5 63700845 63700989 -88836270 + Lx8 LINE L1 6809 6952 -521 3 1071 1841 71 0 0 chr5 63701024 63701262 -88835997 + L1_Mus1 LINE L1 6330 6567 0 3 1071 566 254 83 22 chr5 63705545 63705726 -88831533 + B3A SINE B2 1 192 -6 3 1071 368 311 116 86 chr5 63705804 63706165 -88831094 - LTR40b LTR ERVL 0 519 150 3 1071 568 130 10 0 chr5 63706674 63706774 -88830485 + Lx2 LINE L1 6895 6995 -2 3 1071 438 157 19 10 chr5 63706780 63706798 -88830461 + (TAA)n Simple_repeat Simple_repeat 2 20 0 3 1071 1163 55 0 0 chr5 63706798 63706944 -88830315 + B1_Mm SINE Alu 1 146 -1 3 1071 438 157 19 10 chr5 63706944 63707028 -88830231 + (TAA)n Simple_repeat Simple_repeat 3 87 0 3 1071 654 224 27 0 chr5 63707058 63707205 -88830054 + MTD LTR MaLR 3 153 -266 3 1071 794 233 39 33 chr5 63707577 63707787 -88829472 + MTD LTR MaLR 203 396 -23 3 1071 226 224 0 38 chr5 63709874 63709953 -88827306 + A-rich Low_complexity Low_complexity 4 79 0 3 1071 1604 281 78 22 chr5 63709955 63710607 -88826652 - Lx7 LINE L1 -388 7308 6660 3 1071 5306 129 20 34 chr5 63710617 63711226 -88826033 - Lx3C LINE L1 0 6976 6378 3 1071 6617 79 6 32 chr5 63711226 63712143 -88825116 - RLTR13B1 LTR ERVK 0 893 1 3 1071 5306 129 20 34 chr5 63712143 63712473 -88824786 - Lx3C LINE L1 -599 6377 6050 3 1071 2508 82 15 3 chr5 63712473 63712816 -88824443 - IAPEY_LTR LTR ERVK -2 383 37 3 1071 1748 135 43 1 chr5 63712817 63713135 -88824124 - Lx3C LINE L1 -991 6067 5738 3 1071 930 199 23 0 chr5 63713110 63713331 -88823928 - Lx7 LINE L1 -4201 1679 1454 3 1071 284 291 10 0 chr5 63713446 63713549 -88823710 - Lx7 LINE L1 -4499 1381 1278 3 1071 517 311 58 28 chr5 63713605 63714002 -88823257 - Lx7 LINE L1 -6465 1263 855 3 1071 768 255 81 49 chr5 63714365 63714564 -88822695 + Lx9 LINE L1 5752 5967 -1677 3 1071 333 0 0 0 chr5 63714564 63714601 -88822658 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 3 1071 768 243 71 37 chr5 63714601 63714786 -88822473 + Lx9 LINE L1 5968 6246 -1398 3 1071 2996 226 50 3 chr5 63714819 63715495 -88821764 + Lx9 LINE L1 6306 7013 -631 3 1071 984 58 50 0 chr5 63715495 63715634 -88821625 + L1Md_A LINE L1 6434 6579 -3 3 1071 273 75 0 0 chr5 63715645 63715685 -88821574 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1071 252 393 0 26 chr5 63715872 63715987 -88821272 - Lx8 LINE L1 -220 7253 7142 3 1071 423 119 0 0 chr5 63716116 63716183 -88821076 + (TATG)n Simple_repeat Simple_repeat 4 70 0 3 1071 498 278 85 16 chr5 63716192 63716454 -88820805 + Lx7 LINE L1 5726 5996 -1477 3 1071 237 33 0 0 chr5 63718722 63718752 -88818507 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1071 946 120 6 6 chr5 63718773 63718949 -88818310 + (GA)n Simple_repeat Simple_repeat 1 176 0 3 1071 392 58 0 0 chr5 63719448 63719500 -88817759 + B2_Mm2 SINE B2 2 53 -142 3 1071 3304 112 14 10 chr5 63719500 63719997 -88817262 + Lx LINE L1 6151 6649 -5 3 1071 381 43 0 0 chr5 63720057 63720104 -88817155 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1071 681 186 99 113 chr5 63720355 63720567 -88816692 - ORR1C2 LTR MaLR -18 366 148 3 1071 761 247 5 21 chr5 63720579 63720769 -88816490 - ORR1C2 LTR MaLR -197 187 1 3 1071 2185 163 39 65 chr5 63721302 63721767 -88815492 - RLTR11B LTR ERVK 0 453 1 3 1071 210 288 95 53 chr5 63722059 63722228 -88815031 + L2c LINE L2 3212 3387 0 3 1071 778 224 107 20 chr5 63722821 63723017 -88814242 + B3 SINE B2 2 214 -2 3 1071 2049 241 96 30 chr5 63723026 63723620 -88813639 + Lx9 LINE L1 6353 6985 -659 3 1071 618 82 0 0 chr5 63723620 63723705 -88813554 + (GA)n Simple_repeat Simple_repeat 2 86 0 3 1071 657 195 265 11 chr5 63723705 63723970 -88813289 + Lx9 LINE L1 7312 7643 -1 3 1071 248 356 95 7 chr5 63724111 63724258 -88813001 - RSINE1 SINE B4 -3 162 3 3 1071 231 375 100 18 chr5 63724689 63724909 -88812350 - MLT1E1-int LTR MaLR -305 1082 845 3 1071 575 358 19 58 chr5 63725678 63725936 -88811323 - MLT1E1 LTR MaLR 0 654 407 3 1071 3376 243 69 13 chr5 63725958 63726852 -88810407 - Lx5 LINE L1 -22 7028 6085 3 1071 504 279 70 0 chr5 63726907 63727036 -88810223 - RSINE1 SINE B4 -25 140 3 3 1071 450 377 5 19 chr5 63727160 63727376 -88809883 + MIR SINE MIR 45 257 -5 3 1071 6087 66 8 5 chr5 63728188 63728990 -88808269 - L1Md_F2 LINE L1 -12 6570 5767 3 1071 204 161 65 0 chr5 63731918 63731980 -88805279 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1071 309 311 122 18 chr5 63731995 63732134 -88805125 - L2 LINE L2 -1779 1640 1487 3 1071 2807 207 30 7 chr5 63732134 63732699 -88804560 + Lx5 LINE L1 6473 7050 0 3 1071 309 311 122 18 chr5 63732699 63732723 -88804536 - L2 LINE L2 -1933 1486 1460 3 1071 1710 180 71 9 chr5 63732736 63733072 -88804187 + RMER12B LTR ERVK 1 357 -1047 3 1071 500 290 23 15 chr5 63733176 63733309 -88803950 + ID_B1 SINE B4 82 215 -9 3 1071 27 49 0 0 chr5 63733313 63733354 -88803905 + AT_rich Low_complexity Low_complexity 1 41 0 3 1071 1891 246 12 19 chr5 63733401 63733819 -88803440 + Lx6 LINE L1 7020 7434 -26 3 1071 297 272 0 24 chr5 63734046 63734129 -88803130 + B1F SINE Alu 60 140 -9 3 1071 1162 61 14 0 chr5 63734210 63734358 -88802901 + B1_Mur4 SINE Alu 1 150 0 3 1071 27 29 0 0 chr5 63734358 63734392 -88802867 + AT_rich Low_complexity Low_complexity 1 34 0 3 1071 6168 143 31 0 chr5 63734565 63735585 -88801674 + Lx2 LINE L1 5946 6997 0 3 1071 241 313 0 0 chr5 63735715 63735798 -88801461 + (TA)n Simple_repeat Simple_repeat 2 84 0 3 1071 241 316 35 0 chr5 63735961 63736018 -88801241 - ID4 SINE ID -22 61 3 3 1071 600 14 0 0 chr5 63736643 63736712 -88800547 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1071 204 182 0 0 chr5 63736716 63736760 -88800499 + GA-rich Low_complexity Low_complexity 2 45 0 3 1071 515 294 104 137 chr5 63737902 63738218 -88799041 + RMER5 LTR ERV1 70 388 -146 3 1071 3427 23 2 0 chr5 63738218 63738612 -88798647 - MTA_Mm LTR MaLR -1 395 1 3 1071 515 294 104 137 chr5 63738612 63738776 -88798483 + RMER5 LTR ERV1 389 534 0 3 1071 350 305 0 31 chr5 63739037 63739135 -88798124 - ID_B1 SINE B4 -9 215 121 3 1071 243 0 0 0 chr5 63739358 63739385 -88797874 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1071 958 273 36 50 chr5 63739542 63739823 -88797436 + B4 SINE B4 16 292 0 3 1071 534 31 0 0 chr5 63739825 63739889 -88797370 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1071 203 329 71 66 chr5 63739995 63740177 -88797082 - L2b LINE L2 0 3375 3193 3 1071 341 136 15 0 chr5 63740254 63740320 -88796939 + (CAGAGA)n Simple_repeat Simple_repeat 2 68 0 3 1071 246 160 0 0 chr5 63740804 63740854 -88796405 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1071 237 345 45 73 chr5 63741344 63741571 -88795688 + MIRc SINE MIR 43 259 -3 3 1071 242 273 67 22 chr5 63741744 63741834 -88795425 + Lx8 LINE L1 7278 7371 -102 3 1071 351 197 0 0 chr5 63742070 63742136 -88795123 + BC1_Mm scRNA scRNA 2 67 -85 3 1071 1747 134 69 66 chr5 63742800 63743150 -88794109 - RLTR23 LTR ERV1 0 430 80 3 1071 404 180 10 10 chr5 63743156 63743257 -88794002 + Lx4A LINE L1 6035 6135 -923 3 1071 515 147 0 0 chr5 63743257 63743332 -88793927 - RLTR23 LTR ERV1 -355 75 1 3 1071 580 136 16 0 chr5 63743421 63743546 -88793713 + CT-rich Low_complexity Low_complexity 2 128 0 3 1071 3407 146 12 36 chr5 63743592 63744197 -88793062 + Lx4A LINE L1 5942 6531 -527 3 1071 5560 156 59 18 chr5 63744201 63745219 -88792040 - Lx4A LINE L1 0 7058 5999 3 1071 2763 110 30 5 chr5 63745223 63745652 -88791607 - L1_Mur2 LINE L1 -278 5599 5160 3 1071 221 83 28 0 chr5 63746098 63746134 -88791125 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 3 1071 324 0 0 0 chr5 63747096 63747132 -88790127 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1071 255 31 0 0 chr5 63747132 63747163 -88790096 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1071 816 63 165 8 chr5 63748402 63748529 -88788730 + B1_Mm SINE Alu 1 147 0 3 1071 638 295 10 16 chr5 63748575 63748768 -88788491 + B3 SINE B2 20 211 -5 3 1071 1925 26 9 0 chr5 63748921 63749151 -88788108 - L1Md_F2 LINE L1 -15 6567 6336 3 1071 366 23 0 0 chr5 63749459 63749502 -88787757 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1071 295 312 32 11 chr5 63749860 63749954 -88787305 - PB1D10 SINE Alu -15 102 7 3 1071 369 0 0 0 chr5 63750782 63750823 -88786436 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 1071 1225 278 38 27 chr5 63750892 63751339 -88785920 - L1M2 LINE L1 -549 5742 5291 3 1071 230 211 68 27 chr5 63751332 63751405 -88785854 + L1MA9 LINE L1 6097 6172 -140 3 1071 432 286 83 67 chr5 63751416 63751536 -88785723 + RSINE1 SINE B4 44 165 0 3 1071 273 248 147 0 chr5 63751558 63751687 -88785572 + L1MA9 LINE L1 6165 6312 0 3 1071 4571 262 81 30 chr5 63752049 63753857 -88783402 + Lx9 LINE L1 5613 7642 -2 3 1071 21 0 0 0 chr5 63754124 63754145 -88783114 + AT_rich Low_complexity Low_complexity 1 21 0 3 1071 844 48 0 23 chr5 63755150 63755278 -88781981 + L1Md_F3 LINE L1 6458 6582 -2 3 1071 1111 72 0 0 chr5 63755302 63755441 -88781818 + B1_Mus1 SINE Alu 2 140 -8 4 1071 291 161 0 0 chr5 63755492 63755548 -88781711 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1071 204 122 61 0 chr5 63756806 63756855 -88780404 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 4 1071 232 63 30 60 chr5 63758554 63758621 -88778638 + T-rich Low_complexity Low_complexity 2 66 0 4 1071 1087 268 86 36 chr5 63759403 63759740 -88777519 + ORR1E LTR MaLR 1 354 -5 4 1071 35139 43 1 5 chr5 63759746 63764942 -88772317 + L1Md_T LINE L1 319 5589 -297 4 1071 8374 34 0 4 chr5 63764942 63765942 -88771317 + L1Md_T LINE L1 5590 6585 0 4 1071 718 256 49 25 chr5 63765993 63766197 -88771062 + ERVL-int LTR ERVL 5262 5470 -287 4 1071 1029 224 142 11 chr5 63766200 63766661 -88770598 - Lx9 LINE L1 -2 7642 7122 4 1071 32211 84 12 13 chr5 63766839 63772032 -88765227 + L1Md_F2 LINE L1 416 5586 -297 4 1071 7861 61 3 0 chr5 63772033 63773023 -88764236 + L1Md_F2 LINE L1 5588 6580 -2 4 1071 282 253 33 0 chr5 63773055 63773146 -88764113 + ERVL-int LTR ERVL 5658 5751 -6 4 1071 699 310 134 72 chr5 63773151 63773651 -88763608 + MT2A LTR ERVL 1 531 -2 4 1071 212 295 32 0 chr5 63773770 63773865 -88763394 + (TA)n Simple_repeat Simple_repeat 1 98 0 4 1071 238 226 0 31 chr5 63773787 63773851 -88763408 + (CATA)n Simple_repeat Simple_repeat 3 64 0 4 1071 21 0 0 0 chr5 63774328 63774349 -88762910 + AT_rich Low_complexity Low_complexity 1 21 0 4 1071 624 306 57 0 chr5 63774352 63774561 -88762698 + ERVL-int LTR ERVL 1276 1496 -4261 4 1071 1027 338 48 93 chr5 63774571 63775202 -88762057 + MTE-int LTR MaLR 950 1551 -29 4 1071 399 269 8 42 chr5 63775299 63775419 -88761840 + PB1D9 SINE Alu 2 117 -3 4 1071 26 30 0 0 chr5 63775497 63775530 -88761729 + AT_rich Low_complexity Low_complexity 1 33 0 4 1071 973 297 150 58 chr5 63775723 63777587 -88759672 + L1MC LINE L1 3021 5055 -1091 4 1071 225 294 27 9 chr5 63777590 63777700 -88759559 + L1_Rod LINE L1 5717 5828 -19 4 1071 192 40 0 0 chr5 63777934 63777959 -88759300 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1071 441 0 0 0 chr5 63777959 63778007 -88759252 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1071 10928 54 1 1 chr5 63778367 63779736 -88757523 + L1Md_F2 LINE L1 4218 5586 -297 4 1071 8151 44 0 4 chr5 63779736 63780736 -88756523 + L1Md_F2 LINE L1 5587 6582 0 4 1071 488 324 29 11 chr5 63781305 63781480 -88755779 + B3A SINE B2 5 182 -16 4 1071 180 0 0 0 chr5 63781486 63781506 -88755753 + (TA)n Simple_repeat Simple_repeat 1 20 0 4 1071 606 317 17 51 chr5 63782029 63782325 -88754934 + B4A SINE B4 5 290 -2 4 1071 402 94 0 0 chr5 63782329 63782393 -88754866 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1071 21 57 0 0 chr5 63782453 63782488 -88754771 + AT_rich Low_complexity Low_complexity 1 35 0 4 1071 180 111 0 0 chr5 63783483 63783510 -88753749 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1071 697 227 92 9 chr5 63784455 63784673 -88752586 + Lx7 LINE L1 6014 6249 -1447 4 1071 248 70 0 23 chr5 63784693 63784737 -88752522 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 4 1071 1093 186 64 71 chr5 63784774 63784858 -88752401 + Lx7 LINE L1 7400 7483 -213 4 1071 234 0 0 0 chr5 63784858 63784884 -88752375 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 4 1071 1093 186 64 71 chr5 63784884 63785082 -88752177 + Lx7 LINE L1 7484 7678 -18 4 1071 212 244 0 0 chr5 63785878 63785923 -88751336 + L2b LINE L2 3319 3363 -12 4 1071 284 227 20 40 chr5 63786691 63786792 -88750467 - L1MCb LINE L1 -5884 161 63 4 1071 25 0 0 0 chr5 63787720 63787745 -88749514 + AT_rich Low_complexity Low_complexity 1 25 0 4 1071 364 247 146 12 chr5 63787766 63787930 -88749329 + MER53 DNA hAT 2 187 -6 4 1071 311 308 118 43 chr5 63788428 63788754 -88748505 + ORR1D2 LTR MaLR 21 378 -1 4 1071 21 0 0 0 chr5 63789632 63789653 -88747606 + AT_rich Low_complexity Low_complexity 1 21 0 4 1071 24 67 0 0 chr5 63789740 63789785 -88747474 + AT_rich Low_complexity Low_complexity 1 45 0 4 1071 222 62 0 0 chr5 63790041 63790073 -88747186 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1071 932 194 31 5 chr5 63790439 63790515 -88746744 - RLTR11A LTR ERVK 0 528 447 4 1071 519 17 0 0 chr5 63790515 63790575 -88746684 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1071 932 194 31 5 chr5 63790575 63790690 -88746569 - RLTR11A LTR ERVK -82 446 332 4 1071 1628 158 90 0 chr5 63791049 63791061 -88746198 - RLTR11A LTR ERVK -176 352 340 4 1071 4120 33 0 0 chr5 63791061 63791547 -88745712 - L1Md_T LINE L1 -1 6581 6096 4 1071 1628 158 90 0 chr5 63791547 63791857 -88745402 - RLTR11A LTR ERVK -189 339 2 4 1071 279 336 85 15 chr5 63792566 63792696 -88744563 + MER63B DNA AcHobo 285 423 -13 4 1071 314 321 0 0 chr5 63793382 63793463 -88743796 - B1F SINE Alu -62 87 7 4 1071 1548 284 51 41 chr5 63793488 63794153 -88743106 - L1MC1 LINE L1 -19 6314 5643 4 1071 797 303 19 46 chr5 63794768 63795180 -88742079 + L1MA7 LINE L1 5886 6286 -5 4 1071 529 312 79 33 chr5 63795205 63795420 -88741839 + B4A SINE B4 2 226 -66 4 1071 300 268 0 30 chr5 63795444 63795544 -88741715 + (CATATA)n Simple_repeat Simple_repeat 3 99 0 4 1071 189 0 0 0 chr5 63795972 63795993 -88741266 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 4 1071 476 300 13 45 chr5 63796414 63796571 -88740688 + RSINE1 SINE B4 13 164 -1 4 1071 220 200 0 0 chr5 63796606 63796646 -88740613 + (CAA)n Simple_repeat Simple_repeat 3 42 0 4 1071 272 225 52 104 chr5 63797048 63797102 -88740157 - RLTR11A2 LTR ERVK -80 447 397 4 1071 4827 122 41 81 chr5 63797102 63798045 -88739214 + RMER17A2 LTR ERVK 1 906 0 4 1071 272 225 52 104 chr5 63798045 63798124 -88739135 - RLTR11A2 LTR ERVK -131 396 321 4 1071 2013 40 4 4 chr5 63798992 63799243 -88738016 + L1Md_F2 LINE L1 6323 6573 -9 4 1071 805 299 89 27 chr5 63800678 63801084 -88736175 - Lx8 LINE L1 -9 7464 7034 4 1071 1087 71 0 21 chr5 63801616 63801750 -88735509 + B1_Mus2 SINE Alu 2 135 -12 4 1071 1025 136 0 11 chr5 63801750 63801928 -88735331 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 4 1071 1452 52 0 0 chr5 63804029 63804536 -88732723 + (CA)n Simple_repeat Simple_repeat 1 507 0 4 1071 1431 50 0 0 chr5 63804548 63804728 -88732531 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1071 388 266 142 11 chr5 63806587 63806845 -88730414 + L1MB2 LINE L1 5570 5863 -428 4 1071 250 269 15 0 chr5 63806935 63807002 -88730257 + L1MB2 LINE L1 6010 6077 -112 4 1071 249 355 46 40 chr5 63808580 63808753 -88728506 + MLT1E2 LTR MaLR 14 187 -373 4 1071 341 309 92 77 chr5 63808781 63808977 -88728282 + MLT1E2 LTR MaLR 372 578 -76 4 1071 253 283 0 0 chr5 63809264 63809317 -88727942 + RSINE1 SINE B4 91 143 -22 4 1071 240 111 0 0 chr5 63809853 63809889 -88727370 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1071 505 108 0 0 chr5 63810039 63810122 -88727137 + L1_Mus3 LINE L1 6551 6633 -5 4 1071 1284 26 0 0 chr5 63810686 63810838 -88726421 + (GA)n Simple_repeat Simple_repeat 1 152 0 4 1071 432 0 0 0 chr5 63811079 63811127 -88726132 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1071 285 330 80 17 chr5 63811342 63811579 -88725680 + L1M5 LINE L1 5514 5765 -414 4 1071 227 237 0 17 chr5 63812091 63812151 -88725108 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1071 253 278 81 73 chr5 63812304 63812428 -88724831 + L1MA4 LINE L1 5881 6005 -295 4 1071 22 35 0 0 chr5 63812520 63812549 -88724710 + AT_rich Low_complexity Low_complexity 1 29 0 4 1071 231 146 0 0 chr5 63813319 63813360 -88723899 + (CTG)n Simple_repeat Simple_repeat 1 41 0 4 1071 558 0 0 0 chr5 63813388 63813450 -88723809 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1071 486 0 0 0 chr5 63813870 63813924 -88723335 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1071 204 182 0 0 chr5 63813927 63813971 -88723288 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1071 464 216 0 23 chr5 63814002 63814130 -88723129 - Lx9 LINE L1 -9 7635 7511 4 1071 21 0 0 0 chr5 63814789 63814810 -88722449 + AT_rich Low_complexity Low_complexity 1 21 0 4 1071 1702 161 164 3 chr5 63815597 63815927 -88721332 - ORR1C2 LTR MaLR 0 384 2 4 1071 300 53 0 0 chr5 63816106 63816144 -88721115 + (CAGG)n Simple_repeat Simple_repeat 2 39 0 4 1071 261 83 0 0 chr5 63816491 63816527 -88720732 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1071 186 71 0 0 chr5 63816699 63816727 -88720532 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 4 1071 2787 98 5 0 chr5 63816735 63817123 -88720136 - L1_Mus3 LINE L1 -7 6631 6242 4 1071 619 290 42 21 chr5 63818241 63818431 -88718828 + B3 SINE B2 17 210 -6 4 1071 295 342 9 9 chr5 63818469 63818581 -88718678 + MLT1J LTR MaLR 254 365 -147 4 1071 1112 253 29 35 chr5 63818981 63819296 -88717963 - Lx8 LINE L1 -10 7463 7151 4 1071 333 288 18 46 chr5 63819508 63819617 -88717642 + RMER5 LTR ERV1 1 106 -428 4 1071 885 302 63 21 chr5 63819743 63820078 -88717181 + RMER5 LTR ERV1 186 534 0 4 1071 1933 192 3 11 chr5 63820275 63820643 -88716616 + Lx5 LINE L1 6686 7050 0 4 1071 779 162 27 40 chr5 63820794 63820942 -88716317 - B1_Mur4 SINE Alu -3 147 2 4 1071 794 241 29 0 chr5 63820945 63821115 -88716144 + MTE2a LTR MaLR 205 379 0 4 1071 315 0 0 0 chr5 63823331 63823366 -88713893 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1071 1756 71 0 4 chr5 63823422 63823661 -88713598 + RLTR22_Mus LTR ERVK 1 238 -1570 4 1071 721 232 85 81 chr5 63823831 63824042 -88713217 - B3 SINE B2 0 216 5 4 1071 741 227 85 81 chr5 63824217 63824428 -88712831 - B3 SINE B2 0 216 5 4 1071 456 35 0 0 chr5 63825107 63825165 -88712094 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1071 435 387 17 59 chr5 63825249 63825485 -88711774 - B4A SINE B4 -48 244 19 4 1071 236 234 70 31 chr5 63825524 63825652 -88711607 - Lx9 LINE L1 -38 7606 7474 4 1071 296 323 10 10 chr5 63827480 63827580 -88709679 - MIRb SINE MIR -137 131 32 4 1071 25 75 0 0 chr5 63827631 63827684 -88709575 + AT_rich Low_complexity Low_complexity 1 53 0 4 1071 1690 175 47 53 chr5 63827689 63828069 -88709190 + ORR1C1 LTR MaLR 1 378 0 4 1071 22 0 0 0 chr5 63829069 63829091 -88708168 + AT_rich Low_complexity Low_complexity 1 22 0 4 1071 1176 68 0 0 chr5 63829342 63829488 -88707771 + B1_Mm SINE Alu 1 146 -1 4 1071 724 234 17 46 chr5 63829608 63829783 -88707476 + B3A SINE B2 1 170 -28 4 1071 432 0 0 0 chr5 63829791 63829839 -88707420 + (TC)n Simple_repeat Simple_repeat 1 48 0 4 1071 243 0 0 0 chr5 63829839 63829865 -88707394 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1071 2966 51 0 0 chr5 63830592 63830963 -88706296 - L1_Mus2 LINE L1 -515 6051 5681 5 1071 3630 71 49 2 chr5 63830963 63831456 -88705803 + L1_Mus2 LINE L1 6051 6566 0 5 1072 4087 80 34 3 chr5 63832282 63832863 -88704396 - Lx3_Mus LINE L1 0 7009 6411 5 1072 25 51 0 0 chr5 63834165 63834204 -88703055 + AT_rich Low_complexity Low_complexity 1 39 0 5 1072 414 53 0 0 chr5 63834410 63834467 -88702792 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1072 185 65 0 31 chr5 63834754 63834769 -88702490 + (TA)n Simple_repeat Simple_repeat 1 15 0 5 1072 411 21 0 0 chr5 63834769 63834817 -88702442 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1072 185 65 0 31 chr5 63834817 63834833 -88702426 + (TA)n Simple_repeat Simple_repeat 1 16 0 5 1072 748 266 106 31 chr5 63836440 63836841 -88700418 - MER34 LTR ERV1 -48 494 27 5 1072 315 295 62 47 chr5 63837286 63837414 -88699845 - MLT1A LTR MaLR -1 373 244 5 1072 302 225 56 0 chr5 63837515 63837586 -88699673 - MLT1A LTR MaLR -297 77 3 5 1072 512 283 35 28 chr5 63837704 63837846 -88699413 + B1F SINE Alu 1 143 -6 5 1072 634 230 51 41 chr5 63837856 63838051 -88699208 - L1_Rod LINE L1 -1841 4006 3810 5 1072 619 321 59 20 chr5 63838096 63838350 -88698909 + Lx9 LINE L1 6319 6582 -1062 5 1072 1956 197 113 2 chr5 63838820 63839308 -88697951 - Lx9 LINE L1 -1 7643 7102 5 1072 1659 85 0 8 chr5 63839398 63839635 -88697624 + L1Md_F2 LINE L1 6348 6582 0 5 1072 21 36 0 0 chr5 63839893 63839921 -88697338 + AT_rich Low_complexity Low_complexity 1 28 0 5 1072 26 0 0 0 chr5 63840250 63840276 -88696983 + AT_rich Low_complexity Low_complexity 1 26 0 5 1072 2054 171 57 12 chr5 63841185 63841588 -88695671 - MTC LTR MaLR 0 421 1 5 1072 256 229 21 0 chr5 63841674 63841722 -88695537 + MLT1J LTR MaLR 110 158 -354 5 1072 23 33 0 0 chr5 63841907 63841937 -88695322 + AT_rich Low_complexity Low_complexity 1 30 0 5 1072 354 23 0 0 chr5 63842254 63842297 -88694962 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1072 22 35 0 0 chr5 63842416 63842445 -88694814 + AT_rich Low_complexity Low_complexity 1 29 0 5 1072 232 273 0 0 chr5 63842803 63842858 -88694401 + ID4_ SINE ID 26 80 -3 5 1072 570 54 0 0 chr5 63843454 63843528 -88693731 + (TA)n Simple_repeat Simple_repeat 2 75 0 5 1072 21 71 0 0 chr5 63844179 63844221 -88693038 + AT_rich Low_complexity Low_complexity 1 42 0 5 1072 1305 279 151 29 chr5 63844242 63844793 -88692466 - Lx8 LINE L1 0 7473 6856 5 1072 458 360 64 67 chr5 63844794 63845390 -88691869 - L1MC4 LINE L1 -510 7532 6939 5 1072 1045 308 41 78 chr5 63846708 63847120 -88690139 - RMER5 LTR ERV1 -11 523 127 5 1072 246 278 163 23 chr5 63847264 63847393 -88689866 - MIRb SINE MIR -93 175 29 5 1072 218 312 24 24 chr5 63848627 63848709 -88688550 + PB1D7 SINE Alu 38 119 -1 5 1072 750 249 143 23 chr5 63848771 63849030 -88688229 + B4A SINE B4 3 292 0 5 1072 394 157 24 0 chr5 63849066 63849149 -88688110 + (TA)n Simple_repeat Simple_repeat 1 85 0 5 1072 182 321 125 27 chr5 63849472 63849584 -88687675 - MIRc SINE MIR -124 144 22 5 1072 1940 180 31 8 chr5 63849775 63850133 -88687126 + ORR1B2 LTR MaLR 2 367 0 5 1072 311 306 100 54 chr5 63850289 63850547 -88686712 + ORR1E LTR MaLR 75 365 -14 5 1072 816 85 0 0 chr5 63850676 63850794 -88686465 + (TG)n Simple_repeat Simple_repeat 2 119 0 5 1072 449 256 95 104 chr5 63851403 63851634 -88685625 - ORR1E LTR MaLR -128 231 3 5 1072 258 105 0 0 chr5 63852138 63852176 -88685083 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1072 380 302 106 18 chr5 63852180 63852394 -88684865 + MLT1A0 LTR MaLR 173 406 -2 5 1072 397 296 49 0 chr5 63852448 63852610 -88684649 - L1MA9 LINE L1 -268 6044 5875 5 1072 504 194 0 0 chr5 63852839 63852968 -88684291 + (CATA)n Simple_repeat Simple_repeat 2 130 0 5 1072 541 339 22 0 chr5 63853749 63853929 -88683330 + ID_B1 SINE B4 39 222 -2 5 1072 224 298 0 0 chr5 63854627 63854684 -88682575 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1072 495 0 0 0 chr5 63854687 63854742 -88682517 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1072 234 238 92 31 chr5 63854742 63854807 -88682452 + L2a LINE L2 3307 3375 -51 5 1072 438 231 52 137 chr5 63855817 63856028 -88681231 - MER67D LTR ERV1 -311 203 11 5 1072 1020 218 14 24 chr5 63856453 63856660 -88680599 + ORR1D1 LTR MaLR 1 205 -169 5 1072 2767 260 68 35 chr5 63856663 63857483 -88679776 + Lx4B LINE L1 6209 7055 -3 5 1072 7127 178 44 42 chr5 63857479 63858963 -88678296 + Lx5 LINE L1 5589 7048 -2 5 1072 805 212 42 42 chr5 63858963 63859155 -88678104 + ORR1D1 LTR MaLR 183 374 0 5 1072 444 155 4 16 chr5 63859315 63859419 -88677840 + B1_Mur4 SINE Alu 40 143 -7 5 1072 184 29 114 0 chr5 63859424 63859459 -88677800 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1072 225 0 0 0 chr5 63859648 63859673 -88677586 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1072 453 19 0 0 chr5 63861600 63861654 -88675605 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1072 459 0 0 0 chr5 63861654 63861704 -88675555 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1072 341 98 0 56 chr5 63861956 63862010 -88675249 - ORR1A3 LTR MaLR 0 326 276 5 1072 189 0 0 0 chr5 63862010 63862031 -88675228 + (TTTTC)n Simple_repeat Simple_repeat 2 22 0 5 1072 1413 55 0 0 chr5 63862033 63862215 -88675044 - L1Md_F2 LINE L1 -19 6563 6382 5 1072 10484 65 3 3 chr5 63862240 63864279 -88672980 - L1Md_F2 LINE L1 0 6582 4543 5 1072 1798 122 21 7 chr5 63864279 63864559 -88672700 - ORR1A3 LTR MaLR -42 284 1 5 1072 645 289 13 0 chr5 63865006 63865158 -88672101 - RSINE1 SINE B4 -4 161 8 5 1072 22 35 0 0 chr5 63865721 63865750 -88671509 + AT_rich Low_complexity Low_complexity 1 29 0 5 1072 391 295 81 67 chr5 63865752 63866050 -88671209 + L1MB8 LINE L1 5756 6057 -121 5 1072 398 305 130 12 chr5 63866457 63866626 -88670633 + MTD LTR MaLR 15 203 -216 5 1072 950 234 50 0 chr5 63866638 63866839 -88670420 + B3 SINE B2 6 216 0 5 1072 388 298 124 20 chr5 63866851 63867053 -88670206 + MTD LTR MaLR 197 419 0 5 1072 647 140 181 0 chr5 63867992 63868163 -88669096 + Lx9 LINE L1 7442 7643 -1 5 1072 312 264 66 33 chr5 63868345 63868541 -88668718 + L1M2 LINE L1 2562 2766 -3377 5 1072 185 65 0 31 chr5 63868927 63868959 -88668300 + (GGGAA)n Simple_repeat Simple_repeat 5 35 0 5 1072 242 172 58 106 chr5 63870515 63870589 -88666670 - RMER4A LTR ERVK -82 384 311 5 1072 576 120 10 0 chr5 63870589 63870689 -88666570 - Lx9 LINE L1 -7 7637 7537 5 1072 242 172 58 106 chr5 63870689 63870718 -88666541 - RMER4A LTR ERVK -156 310 286 5 1072 246 147 0 0 chr5 63870718 63870752 -88666507 + Lx7 LINE L1 6423 6456 -1240 5 1072 650 60 24 49 chr5 63870752 63870875 -88666384 + L1_Mus4 LINE L1 6512 6631 -5 5 1072 923 353 128 24 chr5 63871016 63871596 -88665663 - MLT-int LTR MaLR -1 1734 1095 5 1072 1050 280 120 40 chr5 63871783 63872233 -88665026 - MLT-int LTR MaLR -989 746 261 5 1072 185 136 133 22 chr5 63872833 63872878 -88664381 + L3 LINE CR1 3974 4023 -466 5 1072 1007 148 153 0 chr5 63873009 63873205 -88664054 - URR1A DNA MER1_type 0 226 1 5 1072 369 0 0 0 chr5 63873821 63873862 -88663397 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1072 435 63 0 0 chr5 63873862 63873924 -88663335 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1072 22 56 0 0 chr5 63874146 63874182 -88663077 + AT_rich Low_complexity Low_complexity 1 36 0 5 1072 1900 116 23 10 chr5 63874319 63874624 -88662635 - Lx LINE L1 -7 6647 6339 5 1072 2363 129 31 3 chr5 63874638 63874996 -88662263 + Lx LINE L1 5984 6351 -303 5 1072 822 270 115 4 chr5 63875499 63875752 -88661507 + B4A SINE B4 10 290 -2 5 1072 4240 163 29 22 chr5 63875776 63876612 -88660647 + RMER12 LTR ERVK 1 1039 -283 5 1072 509 123 0 58 chr5 63876612 63876733 -88660526 + L1Md_F2 LINE L1 6469 6582 0 5 1072 238 252 0 196 chr5 63876733 63876793 -88660466 + RLTR21 LTR ERVK 1350 1397 -175 5 1072 294 276 39 58 chr5 63877136 63877240 -88660019 + RMER12 LTR ERVK 1220 1321 -1 5 1072 21 57 0 0 chr5 63877434 63877469 -88659790 + AT_rich Low_complexity Low_complexity 1 35 0 5 1072 836 208 0 26 chr5 63878374 63878527 -88658732 + ORR1D1 LTR MaLR 16 164 -210 5 1072 381 22 0 0 chr5 63878834 63878880 -88658379 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1072 484 307 112 70 chr5 63878913 63879172 -88658087 - B4A SINE B4 -20 272 3 5 1072 1569 226 33 14 chr5 63879308 63879675 -88657584 + ORR1D1 LTR MaLR 1 374 0 5 1072 836 136 77 7 chr5 63880458 63880613 -88656646 + RMER4B LTR ERVK 1 166 -419 5 1072 28981 35 0 0 chr5 63880614 63884132 -88653127 + L1Md_T LINE L1 2070 5586 -297 5 1072 8445 32 0 0 chr5 63884132 63885127 -88652132 + L1Md_T LINE L1 5587 6581 -1 5 1072 4927 159 46 22 chr5 63885131 63886040 -88651219 + MurERV4-int LTR ERVK 1877 2807 -2453 5 1072 231 36 0 0 chr5 63886042 63886070 -88651189 + (GA)n Simple_repeat Simple_repeat 1 28 0 5 1072 8707 68 1 5 chr5 63886078 63887225 -88650034 + L1Md_F2 LINE L1 4445 5586 -297 5 1072 7384 59 3 76 chr5 63887226 63888297 -88648962 + L1Md_F2 LINE L1 5588 6580 -2 5 1072 1832 138 96 0 chr5 63888346 63888858 -88648401 + MurERV4-int LTR ERVK 2813 3373 -1887 5 1072 447 313 71 27 chr5 63889293 63889477 -88647782 + ORR1E LTR MaLR 1 192 -167 5 1072 327 264 0 0 chr5 63889550 63889622 -88647637 - B1F SINE Alu -10 139 68 5 1072 225 269 51 51 chr5 63889691 63889789 -88647470 + ORR1E LTR MaLR 317 414 -5 5 1072 354 358 13 7 chr5 63889929 63890081 -88647178 - MIR SINE MIR -38 224 72 5 1072 541 320 54 59 chr5 63890318 63890557 -88646702 + MIRb SINE MIR 11 248 -20 5 1072 186 358 151 14 chr5 63890775 63890914 -88646345 + MIR3 SINE MIR 23 180 -28 5 1072 849 219 122 91 chr5 63891223 63891585 -88645674 - ORR1D1 LTR MaLR 0 374 2 5 1072 274 250 28 28 chr5 63891915 63892022 -88645237 + L1ME4a LINE L1 5546 5652 -472 5 1072 246 226 59 12 chr5 63892071 63892156 -88645103 + L1ME4a LINE L1 5967 6055 -69 5 1072 510 96 0 0 chr5 63892338 63892411 -88644848 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1072 410 283 136 19 chr5 63893428 63893590 -88643669 + Lx7 LINE L1 6930 7110 -586 5 1072 593 329 25 20 chr5 63893591 63893836 -88643423 + Lx7 LINE L1 7062 7307 -389 6 1072 261 0 0 0 chr5 63893858 63893887 -88643372 + (TGG)n Simple_repeat Simple_repeat 1 29 0 6 1072 429 20 0 0 chr5 63893994 63894044 -88643215 + (TTGG)n Simple_repeat Simple_repeat 1 50 0 6 1072 252 0 0 0 chr5 63895021 63895049 -88642210 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1072 23 0 0 0 chr5 63895946 63895969 -88641290 + AT_rich Low_complexity Low_complexity 1 23 0 6 1072 589 279 79 37 chr5 63896096 63896260 -88640999 - B4A SINE B4 -1 291 121 6 1072 420 262 32 24 chr5 63896245 63896370 -88640889 - ORR1E LTR MaLR -233 126 1 6 1072 597 205 274 6 chr5 63897058 63897215 -88640044 - B3 SINE B2 -15 201 3 6 1072 272 218 0 13 chr5 63897607 63897686 -88639573 + RMER1C Other Other 1265 1342 0 6 1072 24 32 0 0 chr5 63897797 63897828 -88639431 + AT_rich Low_complexity Low_complexity 1 31 0 6 1072 309 323 37 15 chr5 63897846 63897981 -88639278 - MER5A1 DNA MER1_type -27 139 2 6 1072 719 181 115 28 chr5 63898095 63898277 -88638982 + B3A SINE B2 1 198 0 6 1072 198 0 0 0 chr5 63899181 63899203 -88638056 + (TAA)n Simple_repeat Simple_repeat 2 23 0 6 1072 1184 281 79 55 chr5 63899620 63900199 -88637060 - Lx9 LINE L1 -42 7602 6878 6 1072 1023 303 48 3 chr5 63900309 63900624 -88636635 + RMER1A Other Other 242 570 -460 6 1072 6600 68 40 0 chr5 63900624 63901483 -88635776 - RLTR13B1 LTR ERVK 0 893 1 6 1072 2389 115 0 14 chr5 63901497 63901866 -88635393 - ETnERV3-int LTR ERVK -28 5780 5417 6 1072 1942 183 25 37 chr5 63901873 63902281 -88634978 + RMER1B Other Other 653 1055 -11 6 1072 448 273 0 29 chr5 63902293 63902429 -88634830 - Lx6 LINE L1 -198 7262 7131 6 1072 1834 184 21 184 chr5 63902526 63903127 -88634132 + L1Md_F LINE L1 675 1185 -5431 6 1072 411 38 0 0 chr5 63903127 63903180 -88634079 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1072 22037 102 11 156 chr5 63903180 63905378 -88631881 + L1Md_F LINE L1 1186 3377 -2506 6 1072 6682 42 0 0 chr5 63905378 63906181 -88631078 - L1Md_T LINE L1 0 6582 5780 6 1072 22037 101 11 155 chr5 63906181 63908925 -88628334 + L1Md_F LINE L1 3378 5402 -481 6 1072 472 244 31 125 chr5 63908925 63908968 -88628291 + ID_B1 SINE B4 51 221 0 6 1072 909 31 14 123 chr5 63908968 63909114 -88628145 + B1_Mus1 SINE Alu 18 147 -1 6 1072 1192 93 0 6 chr5 63909137 63909309 -88627950 + L1_Mus2 LINE L1 5441 5611 -272 6 1072 1939 129 68 27 chr5 63909325 63909690 -88627569 - RLTR9E LTR ERVK -29 380 1 6 1072 1327 58 26 21 chr5 63909690 63909883 -88627376 + L1_Mus2 LINE L1 5604 5797 -769 6 1072 4262 55 16 0 chr5 63909883 63910442 -88626817 + L1Md_F LINE L1 276 843 -5676 6 1072 1149 86 434 0 chr5 63910430 63910674 -88626585 + L1Md_A LINE L1 5925 6274 -308 6 1072 1526 38 0 0 chr5 63910674 63910860 -88626399 + L1Md_F2 LINE L1 5401 5586 -297 6 1072 7996 44 14 4 chr5 63910860 63911845 -88625414 + L1Md_F2 LINE L1 5587 6581 -1 6 1072 5589 81 9 35 chr5 63911840 63912645 -88624614 + L1_Mus2 LINE L1 5783 6566 0 6 1072 191 36 36 0 chr5 63912653 63912681 -88624578 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1072 792 251 65 8 chr5 63912685 63912946 -88624313 - Lx6 LINE L1 -343 7117 6842 6 1072 375 23 0 0 chr5 63912949 63912993 -88624266 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1072 479 182 18 9 chr5 63912993 63913009 -88624250 - Lx7 LINE L1 -791 6905 6889 6 1072 495 0 0 0 chr5 63913009 63913064 -88624195 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1072 479 182 18 9 chr5 63913064 63913158 -88624101 - Lx7 LINE L1 -808 6888 6794 6 1072 569 360 84 34 chr5 63913546 63913986 -88623273 + MT2A LTR ERVL 1 462 -71 6 1072 332 289 31 118 chr5 63914366 63914379 -88622880 + ID_B1 SINE B4 78 158 -66 6 1072 399 357 21 0 chr5 63914379 63914519 -88622740 + B1F1 SINE Alu 7 149 0 6 1072 515 53 13 0 chr5 63914631 63914707 -88622552 - L1_Mus3 LINE L1 -471 6167 6091 6 1072 3072 111 27 15 chr5 63914707 63914924 -88622335 + L1_Mus3 LINE L1 6157 6374 -264 6 1072 300 27 0 0 chr5 63914924 63914961 -88622298 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1072 3072 111 27 15 chr5 63914961 63915219 -88622040 + L1_Mus3 LINE L1 6375 6637 -1 6 1072 387 0 0 0 chr5 63915273 63915316 -88621943 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 6 1072 1863 207 182 28 chr5 63917399 63917997 -88619262 - RMER6C LTR ERVK 0 690 1 6 1072 304 350 26 59 chr5 63917997 63918149 -88619110 + MER20 DNA MER1_type 1 147 -72 6 1072 14750 154 22 28 chr5 63919516 63921129 -88616130 + L1VL4 LINE L1 529 2145 -3738 6 1072 1523 31 0 10 chr5 63921129 63921322 -88615937 + L1Md_F3 LINE L1 6382 6572 -12 6 1072 14750 131 3 35 chr5 63921322 63923123 -88614136 + L1VL4 LINE L1 2146 3880 -2003 6 1072 7414 86 3 2 chr5 63923149 63924198 -88613061 + L1_Mus3 LINE L1 5589 6638 0 6 1072 212 394 31 53 chr5 63925459 63925687 -88611572 + L2 LINE L2 1232 1454 -1965 6 1072 1338 42 0 0 chr5 63925854 63926019 -88611240 + (GGGAA)n Simple_repeat Simple_repeat 5 169 0 6 1072 847 137 6 6 chr5 63926072 63926248 -88611011 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 6 1072 255 61 0 0 chr5 63926248 63926281 -88610978 + (CAGG)n Simple_repeat Simple_repeat 1 33 0 6 1072 486 319 22 0 chr5 63926292 63926430 -88610829 + B1F1 SINE Alu 9 149 0 6 1072 437 332 104 7 chr5 63926674 63926945 -88610314 + L1M4 LINE L1 4164 4457 -1689 6 1072 483 383 52 0 chr5 63926962 63927192 -88610067 + B4A SINE B4 1 242 -50 6 1072 192 279 0 0 chr5 63927307 63927368 -88609891 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 6 1072 278 202 143 0 chr5 63927457 63927576 -88609683 + L1M4 LINE L1 4628 4763 -1383 6 1072 479 313 124 26 chr5 63928497 63928845 -88608414 - Lx8 LINE L1 -4 7469 7088 6 1072 672 266 62 7 chr5 63928807 63929095 -88608164 + L1_Mur3 LINE L1 4580 4883 -997 6 1072 302 289 52 19 chr5 63929083 63929238 -88608021 + L1M1 LINE L1 5488 5647 -656 6 1072 396 0 0 0 chr5 63929447 63929491 -88607768 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1072 273 259 141 0 chr5 63929657 63929792 -88607467 + Charlie5 DNA MER1_type 2438 2591 -33 6 1072 411 331 14 0 chr5 63931180 63931322 -88605937 + L3 LINE CR1 4248 4391 -98 6 1072 294 360 50 0 chr5 63931325 63931464 -88605795 - L2b LINE L2 -2 3373 3228 6 1072 248 282 89 57 chr5 63932555 63932713 -88604546 - MIR SINE MIR -61 201 39 6 1072 241 341 22 11 chr5 63933211 63933303 -88603956 + MIRb SINE MIR 65 157 -111 6 1072 1157 292 23 14 chr5 63933443 63933794 -88603465 + MTE2b LTR MaLR 26 379 0 6 1072 186 247 218 13 chr5 63933797 63933875 -88603384 + MIRb SINE MIR 35 128 -140 6 1072 1043 134 0 6 chr5 63933982 63934162 -88603097 + (CTG)n Simple_repeat Simple_repeat 1 179 0 6 1072 181 370 49 49 chr5 63934809 63934885 -88602374 - L2b LINE L2 0 3375 3298 6 1072 3223 50 5 2 chr5 63934885 63935284 -88601975 - MTB LTR MaLR 0 400 1 6 1072 181 370 49 49 chr5 63935284 63935349 -88601910 - L2b LINE L2 -78 3297 3234 6 1072 301 155 42 0 chr5 63935857 63935928 -88601331 + GA-rich Low_complexity Low_complexity 2 75 0 6 1072 398 302 119 38 chr5 63936134 63936445 -88600814 - MLT1A LTR MaLR 0 374 34 6 1072 773 250 39 10 chr5 63936793 63936999 -88600260 + B3 SINE B2 1 212 -4 6 1072 6773 96 14 1 chr5 63937212 63938248 -88599011 + Lx2 LINE L1 5535 6582 -415 6 1072 209 239 55 27 chr5 63938259 63938332 -88598927 + GA-rich Low_complexity Low_complexity 1 75 0 6 1072 288 267 0 62 chr5 63938505 63938585 -88598674 + B4A SINE B4 200 274 -18 6 1072 227 290 0 0 chr5 63938594 63938656 -88598603 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 6 1072 617 0 14 0 chr5 63938658 63938731 -88598528 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1072 288 111 36 36 chr5 63938884 63938940 -88598319 - B1_Mm SINE Alu -1 146 91 6 1072 226 328 32 32 chr5 63938938 63939064 -88598195 + LTR34 LTR ERV1 530 655 -44 6 1072 385 377 51 5 chr5 63939159 63939375 -88597884 + MIR SINE MIR 12 237 -25 6 1072 405 0 0 0 chr5 63939377 63939422 -88597837 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1072 322 319 55 62 chr5 63939437 63939649 -88597610 - MIRb SINE MIR -45 223 5 6 1072 1080 320 39 67 chr5 63940550 63940753 -88596506 + MT2A LTR ERVL 1 185 -348 6 1072 5800 60 13 17 chr5 63940753 63941526 -88595733 - L1Md_F2 LINE L1 0 6582 5813 6 1072 1080 320 39 67 chr5 63941526 63941788 -88595471 + MT2A LTR ERVL 186 453 -80 6 1072 814 291 101 63 chr5 63943027 63943570 -88593689 + RMER1C Other Other 70 633 -709 6 1072 3261 256 23 55 chr5 63943570 63944561 -88592698 + RMER1C Other Other 375 1334 -8 6 1072 3315 81 58 0 chr5 63944792 63945238 -88592021 + L1_Mus1 LINE L1 6096 6567 0 6 1072 1682 196 93 45 chr5 63945271 63945690 -88591569 + Lx5 LINE L1 4358 4808 -1072 6 1072 285 100 0 0 chr5 63945690 63945740 -88591519 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1072 513 0 0 0 chr5 63945740 63945796 -88591463 + (GA)n Simple_repeat Simple_repeat 2 58 0 6 1072 1682 196 93 45 chr5 63945796 63945935 -88591324 + Lx5 LINE L1 4809 4942 -938 6 1072 5831 167 54 22 chr5 63945917 63947694 -88589565 + Lx5 LINE L1 5189 7048 -2 6 1072 4120 217 70 14 chr5 63947685 63949102 -88588157 + Lx6 LINE L1 5232 6751 -709 6 1072 243 0 0 0 chr5 63949102 63949129 -88588130 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1072 1674 155 48 3 chr5 63949394 63949686 -88587573 - Lx4A LINE L1 -2 7056 6752 6 1072 247 215 118 0 chr5 63949942 63950019 -88587240 + MIRb SINE MIR 8 98 -170 6 1072 617 342 35 49 chr5 63950116 63950402 -88586857 + MLT1A0 LTR MaLR 84 365 0 6 1072 304 254 50 25 chr5 63950548 63950669 -88586590 + MIRb SINE MIR 139 262 -6 6 1072 283 381 17 35 chr5 63951839 63952013 -88585246 + LTR16A LTR ERVL 4 174 -277 6 1072 497 343 79 5 chr5 63953297 63953511 -88583748 + MTEa LTR MaLR 1 230 -149 6 1072 272 305 33 17 chr5 63953537 63953657 -88583602 + MTEa LTR MaLR 249 370 0 6 1072 362 151 14 0 chr5 63953960 63954033 -88583226 + G-rich Low_complexity Low_complexity 4 77 0 6 1072 344 103 0 17 chr5 63954037 63954096 -88583163 + (GA)n Simple_repeat Simple_repeat 2 59 0 6 1072 194 227 0 178 chr5 63955113 63955220 -88582039 + MIRm SINE MIR 2 89 -187 6 1072 7152 89 9 14 chr5 63956829 63957817 -88579442 + RLTR13C1 LTR ERVK 1 983 0 6 1072 326 200 14 14 chr5 63958103 63958174 -88579085 - MER74A LTR ERVL -2 620 550 6 1072 689 340 94 38 chr5 63958209 63958604 -88578655 + MLT2B1 LTR ERVL 1 417 -103 6 1072 542 40 26 0 chr5 63958642 63958718 -88578541 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 6 1072 411 38 0 0 chr5 63958723 63958776 -88578483 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 7 1072 869 341 60 34 chr5 63958856 63959269 -88577990 - MER74A LTR ERVL -116 442 19 6 1072 240 320 0 25 chr5 63959310 63959326 -88577933 + (TG)n Simple_repeat Simple_repeat 1 16 0 7 1072 377 70 0 17 chr5 63959326 63959384 -88577875 + (TA)n Simple_repeat Simple_repeat 2 58 0 7 1072 240 320 0 25 chr5 63959384 63959447 -88577812 + (TG)n Simple_repeat Simple_repeat 1 62 0 7 1072 330 344 64 25 chr5 63959453 63959733 -88577526 - B4A SINE B4 0 292 2 7 1072 27 29 0 0 chr5 63959810 63959844 -88577415 + AT_rich Low_complexity Low_complexity 1 34 0 7 1072 415 338 62 6 chr5 63960483 63960644 -88576615 + B4A SINE B4 103 272 -20 7 1072 228 207 17 17 chr5 63960701 63960760 -88576499 + GA-rich Low_complexity Low_complexity 2 60 0 7 1072 1142 264 95 36 chr5 63960778 63960791 -88576468 + MTE2a LTR MaLR 1 13 -366 7 1072 3335 155 210 70 chr5 63960791 63961582 -88575677 - RMER19B LTR ERVK 0 902 1 7 1072 1142 264 95 36 chr5 63961582 63961926 -88575333 + MTE2a LTR MaLR 14 379 0 7 1072 2154 93 13 3 chr5 63961961 63962274 -88574985 + L1_Mus3 LINE L1 6322 6637 -1 7 1072 756 255 151 57 chr5 63962602 63962881 -88574378 + MTEb LTR MaLR 75 379 0 7 1073 422 252 54 9 chr5 63963164 63963276 -88573983 - MER63B DNA AcHobo 0 436 320 7 1073 637 286 29 34 chr5 63963878 63964078 -88573181 - B3A SINE B2 -2 193 1 7 1073 2546 109 10 3 chr5 63964473 63964859 -88572400 - L1_Mus4 LINE L1 -12 6624 6236 7 1073 238 311 48 40 chr5 63964897 63965021 -88572238 - L3 LINE CR1 -9 4480 4356 7 1073 219 333 48 0 chr5 63965221 63965284 -88571975 + ID4 SINE ID 7 72 -11 7 1073 294 217 0 0 chr5 63965286 63965355 -88571904 + GA-rich Low_complexity Low_complexity 3 71 0 7 1073 543 317 75 121 chr5 63966286 63966591 -88570668 + B4A SINE B4 2 292 0 7 1073 234 294 0 0 chr5 63966799 63966850 -88570409 + L2c LINE L2 3093 3143 -244 7 1073 2192 198 19 12 chr5 63967325 63967740 -88569519 + MTC LTR MaLR 1 418 -3 7 1073 1832 209 52 10 chr5 63967843 63968245 -88569014 - MTD LTR MaLR 0 419 1 7 1073 361 298 210 0 chr5 63969156 63969280 -88567979 - RSINE1 SINE B4 -5 160 11 7 1073 301 382 24 8 chr5 63969965 63970089 -88567170 + ID_B1 SINE B4 1 126 -98 7 1073 272 245 217 38 chr5 63970090 63970196 -88567063 + RMER20B LTR ERVK 1 125 -502 7 1073 271 333 43 0 chr5 63970537 63970630 -88566629 + ID_B1 SINE B4 124 220 -4 7 1073 1754 233 49 8 chr5 63971160 63971549 -88565710 - MTD LTR MaLR -14 405 1 7 1073 234 312 47 40 chr5 63972231 63972381 -88564878 + HAL1 LINE L1 614 764 -1743 7 1073 195 329 25 25 chr5 63972790 63972871 -88564388 + MIRm SINE MIR 194 274 -2 7 1073 185 289 73 53 chr5 63972930 63973080 -88564179 - MIR SINE MIR -56 206 54 7 1073 608 234 13 9 chr5 63973356 63973526 -88563733 - L1MB7 LINE L1 -1991 6004 5838 7 1073 1498 262 33 6 chr5 63973562 63973926 -88563333 + MTD LTR MaLR 45 418 -1 7 1073 682 282 89 0 chr5 63973928 63974208 -88563051 - L1MB7 LINE L1 -345 5839 5535 7 1073 618 266 153 6 chr5 63975545 63975715 -88561544 + B3 SINE B2 2 196 -20 7 1073 21 0 0 0 chr5 63975719 63975740 -88561519 + AT_rich Low_complexity Low_complexity 1 21 0 7 1073 239 299 134 22 chr5 63976415 63976736 -88560523 - L1M5 LINE L1 -409 5715 5359 7 1073 227 259 79 18 chr5 63977032 63977146 -88560113 + Lx7 LINE L1 7566 7686 -10 7 1073 552 116 0 0 chr5 63977581 63977667 -88559592 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 7 1073 450 345 36 65 chr5 63980634 63980882 -88556377 - B4A SINE B4 -18 274 34 7 1073 2189 38 0 0 chr5 63980893 63981155 -88556104 + L1Md_F2 LINE L1 6321 6582 0 7 1073 233 203 25 75 chr5 63981296 63981376 -88555883 - MLT1A1 LTR MaLR -332 76 1 7 1073 198 0 0 0 chr5 63981960 63981982 -88555277 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1073 37324 55 1 23 chr5 63982006 63988683 -88548576 - L1Md_T LINE L1 0 6582 102 7 1073 233 269 42 69 chr5 63988832 63988904 -88548355 - MIRb SINE MIR -87 181 112 7 1073 244 345 89 105 chr5 63989775 63990099 -88547160 + MLT1I LTR MaLR 84 402 -9 7 1073 252 345 85 51 chr5 63990108 63990285 -88546974 - MLT1A0 LTR MaLR -2 510 328 7 1073 599 309 90 25 chr5 63990423 63990702 -88546557 - MLT1A0 LTR MaLR -65 300 4 7 1073 22 56 0 0 chr5 63991046 63991082 -88546177 + AT_rich Low_complexity Low_complexity 1 36 0 7 1073 35060 27 2 9 chr5 63991626 63996837 -88540422 + L1Md_T LINE L1 416 5585 -298 7 1073 8476 33 0 0 chr5 63996838 63997833 -88539426 + L1Md_T LINE L1 5587 6581 -1 7 1073 381 43 0 0 chr5 63999255 63999302 -88537957 + (TC)n Simple_repeat Simple_repeat 2 48 0 7 1073 321 135 0 0 chr5 64001227 64001279 -88535980 + (TATG)n Simple_repeat Simple_repeat 3 54 0 1 1073 412 285 8 24 chr5 64001609 64001735 -88535524 - ORR1E LTR MaLR -235 124 1 2 1073 6493 92 75 2 chr5 64003359 64004244 -88533015 + Lx3A LINE L1 6031 6979 -2 3 1073 1453 75 10 31 chr5 64004869 64005061 -88532198 + B2_Mm1t SINE B2 1 188 -5 4 1073 423 220 283 0 chr5 64005613 64005772 -88531487 + Lx9 LINE L1 7419 7622 -22 5 1073 528 297 19 39 chr5 64006154 64006308 -88530951 + MER70B LTR ERVL 12 162 -416 6 1073 753 312 67 17 chr5 64006446 64006743 -88530516 + MER70B LTR ERVL 241 552 -26 6 1073 979 67 21 5 chr5 64007226 64007368 -88529891 - L1_Mus1 LINE L1 -315 6339 6203 7 1073 1924 60 17 4 chr5 64007368 64007602 -88529657 + L1_Mus1 LINE L1 6331 6567 0 7 1073 3150 49 6 0 chr5 64008971 64009336 -88527923 - L1_Mus1 LINE L1 0 6567 6201 8 1073 372 340 81 34 chr5 64010601 64010750 -88526509 + B3A SINE B2 1 156 -42 9 1073 450 53 0 0 chr5 64010751 64010808 -88526451 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1073 1218 311 86 20 chr5 64010944 64011477 -88525782 - MT2A LTR ERVL 0 554 1 1 1073 192 77 0 0 chr5 64013855 64013881 -88523378 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1073 285 125 0 0 chr5 64016116 64016172 -88521087 + (A)n Simple_repeat Simple_repeat 1 56 0 1 1073 591 15 0 0 chr5 64016374 64016442 -88520817 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1073 3370 176 50 20 chr5 64017077 64017662 -88519597 + Lx4B LINE L1 6455 7056 -2 1 1073 718 21 0 31 chr5 64018500 64018598 -88518661 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 1 1073 306 0 0 0 chr5 64018668 64018702 -88518557 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1073 225 65 0 0 chr5 64018703 64018734 -88518525 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1073 342 0 0 0 chr5 64020087 64020125 -88517134 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1 1073 2129 258 78 35 chr5 64020269 64020882 -88516377 + Lx9 LINE L1 6784 7420 -224 2 1073 222 128 0 0 chr5 64020882 64020921 -88516338 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 1073 2129 258 78 35 chr5 64020921 64020986 -88516273 + Lx9 LINE L1 7421 7490 -154 2 1073 925 247 112 6 chr5 64021209 64021539 -88515720 + Lx9 LINE L1 7280 7644 0 2 1073 454 328 113 26 chr5 64021551 64021861 -88515398 + MLT1I LTR MaLR 1 337 -74 2 1073 1427 293 79 51 chr5 64022028 64022790 -88514469 - L1MB7 LINE L1 -123 6061 5279 2 1073 180 77 0 0 chr5 64022791 64022817 -88514442 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 2 1073 506 343 80 29 chr5 64022966 64023242 -88514017 - B4A SINE B4 0 292 3 2 1073 1587 198 87 34 chr5 64023374 64023729 -88513530 - RLTR11A LTR ERVK -154 374 1 2 1073 595 310 77 91 chr5 64023763 64024500 -88512759 - L1MB7 LINE L1 -1224 4922 4196 2 1073 1407 230 24 0 chr5 64024892 64025179 -88512080 + Lx6 LINE L1 6205 6498 -962 2 1073 414 0 0 0 chr5 64025181 64025227 -88512032 + (TAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1073 3189 225 8 3 chr5 64025228 64025817 -88511442 + Lx6 LINE L1 6857 7448 -12 2 1073 644 194 4 0 chr5 64026387 64026649 -88510610 + (TG)n Simple_repeat Simple_repeat 1 263 0 3 1073 320 120 20 0 chr5 64026649 64026699 -88510560 - HAL1-3A_ME LINE L1 -830 2028 1978 3 1073 228 220 0 0 chr5 64026700 64026750 -88510509 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1073 235 276 107 41 chr5 64026780 64026901 -88510358 - Tigger15a DNA TcMar -385 330 202 3 1073 497 346 13 32 chr5 64027752 64027891 -88509368 + RSINE1 SINE B4 3 141 -24 3 1073 5031 85 186 17 chr5 64027891 64028666 -88508593 + RMER17A2 LTR ERVK 1 906 0 3 1073 497 346 13 32 chr5 64028666 64028684 -88508575 + RSINE1 SINE B4 142 157 -8 3 1073 621 27 0 0 chr5 64028692 64028767 -88508492 + (CATA)n Simple_repeat Simple_repeat 2 76 0 3 1073 11100 43 9 4 chr5 64029786 64031535 -88505724 - L1Md_F2 LINE L1 -4 6578 4814 3 1073 6856 79 50 5 chr5 64031535 64032424 -88504835 - RLTR13B3 LTR ERVK 0 929 1 3 1073 11100 43 1 5 chr5 64032424 64032692 -88504567 - L1Md_F2 LINE L1 -1070 4813 4546 3 1073 2557 120 40 18 chr5 64033042 64033442 -88503817 + Lx2A1 LINE L1 6596 7004 -4 3 1073 180 0 0 0 chr5 64033446 64033466 -88503793 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1073 216 0 0 0 chr5 64033797 64033821 -88503438 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1073 1052 117 12 0 chr5 64034161 64034332 -88502927 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 4 1073 279 0 0 0 chr5 64035373 64035404 -88501855 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1073 2985 255 116 56 chr5 64035404 64036225 -88501034 + Lx9 LINE L1 6426 7291 -353 4 1073 7036 47 1 27 chr5 64036225 64037073 -88500186 - L1Md_F2 LINE L1 0 6582 5757 4 1073 2985 255 116 56 chr5 64037073 64037201 -88500058 + Lx9 LINE L1 7292 7455 -189 4 1073 1452 98 10 20 chr5 64037201 64037398 -88499861 + B2_Mm2 SINE B2 1 195 0 4 1073 2985 255 116 56 chr5 64037398 64037597 -88499662 + Lx9 LINE L1 7456 7642 -2 4 1073 280 273 0 0 chr5 64038512 64038567 -88498692 + B3 SINE B2 2 56 -160 4 1073 366 209 217 43 chr5 64039747 64039862 -88497397 - B1F SINE Alu -5 144 10 4 1073 699 54 0 0 chr5 64042244 64042336 -88494923 + (GA)n Simple_repeat Simple_repeat 1 92 0 4 1073 22 35 0 0 chr5 64042611 64042640 -88494619 + AT_rich Low_complexity Low_complexity 1 29 0 5 1073 180 307 88 33 chr5 64042918 64043009 -88494250 - L3 LINE CR1 -604 3885 3790 5 1073 459 0 0 0 chr5 64043662 64043713 -88493546 + (TTTTG)n Simple_repeat Simple_repeat 1 51 0 5 1073 217 291 5 123 chr5 64043835 64044018 -88493241 - MIR SINE MIR -54 208 57 5 1073 28 29 0 0 chr5 64044922 64044957 -88492302 + AT_rich Low_complexity Low_complexity 1 35 0 5 1073 1303 115 124 10 chr5 64045016 64045218 -88492041 + URR1A DNA MER1_type 2 226 0 5 1073 226 276 167 38 chr5 64045220 64045352 -88491907 - MER46C DNA MER2_type -188 150 2 5 1073 250 314 104 39 chr5 64045352 64045523 -88491736 - LTR79 LTR ERVL -130 397 215 5 1073 214 280 0 0 chr5 64046105 64046155 -88491104 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 5 1073 326 343 85 24 chr5 64046349 64046561 -88490698 + MIRb SINE MIR 32 256 -12 5 1073 256 274 0 19 chr5 64047442 64047490 -88489769 + ORR1B1-int LTR MaLR 602 646 -863 6 1073 985 82 4 0 chr5 64047490 64047632 -88489627 + B1_Mus1 SINE Alu 1 147 -3 6 1073 275 262 135 10 chr5 64047784 64047888 -88489371 - MLT1H1 LTR MaLR 0 555 439 6 1073 36150 36 0 0 chr5 64048637 64054039 -88483220 + L1Md_T LINE L1 92 5589 -297 6 1073 9564 6 0 0 chr5 64054039 64055093 -88482166 + L1Md_T LINE L1 5590 6585 0 6 1073 1820 46 0 0 chr5 64055783 64056001 -88481258 - L1_Mus1 LINE L1 -138 6429 6212 6 1073 1018 69 0 0 chr5 64056001 64056132 -88481127 + L1_Mus1 LINE L1 6437 6567 0 6 1073 1269 85 0 0 chr5 64056138 64056314 -88480945 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 6 1073 315 0 0 0 chr5 64056991 64057026 -88480233 + (TTG)n Simple_repeat Simple_repeat 1 35 0 6 1073 204 200 0 0 chr5 64057125 64057175 -88480084 + (ATG)n Simple_repeat Simple_repeat 2 51 0 6 1073 1066 104 46 71 chr5 64057292 64057422 -88479837 + B2_Mm2 SINE B2 2 124 -71 6 1073 255 31 0 0 chr5 64057422 64057454 -88479805 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1073 1066 104 46 71 chr5 64057454 64057520 -88479739 + B2_Mm2 SINE B2 125 191 -4 6 1073 414 0 0 0 chr5 64057839 64057885 -88479374 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1073 312 155 0 0 chr5 64058079 64058150 -88479109 + GA-rich Low_complexity Low_complexity 1 71 0 7 1073 408 294 87 10 chr5 64059006 64059294 -88477965 - MTD LTR MaLR -2 417 42 7 1073 1287 252 109 72 chr5 64059327 64060271 -88476988 - MTC-int LTR MaLR -122 1136 60 7 1073 186 43 0 0 chr5 64060271 64060294 -88476965 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 7 1073 761 218 67 139 chr5 64060294 64060332 -88476927 - MTC-int LTR MaLR -1199 59 19 7 1073 182 91 0 29 chr5 64060342 64060376 -88476883 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 7 1073 270 0 0 0 chr5 64060417 64060447 -88476812 + (TA)n Simple_repeat Simple_repeat 2 31 0 7 1073 312 276 75 19 chr5 64060448 64060555 -88476704 - MTD LTR MaLR -44 375 263 7 1073 577 289 129 30 chr5 64060665 64060897 -88476362 - MTD LTR MaLR -159 260 6 7 1073 287 390 111 14 chr5 64061192 64061408 -88475851 + MLT1G1 LTR MaLR 334 570 -9 7 1073 1168 61 0 0 chr5 64061592 64061739 -88475520 + B1_Mus2 SINE Alu 1 147 0 7 1073 4792 109 87 59 chr5 64061760 64062664 -88474595 + L1_Mus2 LINE L1 5637 6566 0 8 1073 21 36 0 0 chr5 64062723 64062751 -88474508 + AT_rich Low_complexity Low_complexity 1 28 0 8 1073 668 54 0 11 chr5 64063568 64063662 -88473597 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 8 1073 1293 219 65 36 chr5 64063723 64064151 -88473108 + Lx2B LINE L1 6512 7051 -7 8 1073 180 0 0 0 chr5 64064168 64064188 -88473071 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1073 775 264 20 15 chr5 64065051 64065251 -88472008 - MTE2a LTR MaLR -13 366 166 8 1073 423 291 34 135 chr5 64065334 64065541 -88471718 - MTE2a LTR MaLR -191 188 3 8 1073 1560 190 98 3 chr5 64066069 64066396 -88470863 - ORR1D1 LTR MaLR -12 362 5 8 1073 629 101 10 0 chr5 64066571 64066670 -88470589 + (TG)n Simple_repeat Simple_repeat 2 101 0 8 1073 226 261 21 83 chr5 64067389 64067485 -88469774 + MIR3 SINE MIR 112 201 -7 8 1073 5199 111 5 1 chr5 64068382 64069143 -88468116 - Lx2 LINE L1 0 6997 6234 8 1073 225 308 0 15 chr5 64069317 64069383 -88467876 - L2a LINE L2 -3 3423 3359 9 1073 215 368 43 63 chr5 64069742 64069997 -88467262 - L2a LINE L2 -180 3246 2997 9 1073 244 377 17 17 chr5 64070024 64070140 -88467119 + MamRep1894 DNA hAT 4 119 -4 9 1073 349 206 108 22 chr5 64070356 64070495 -88466764 - L1M2 LINE L1 -745 5567 5417 9 1073 358 316 0 0 chr5 64070716 64070814 -88466445 + B3A SINE B2 3 100 -98 9 1073 207 157 0 38 chr5 64072793 64072846 -88464413 + (TAA)n Simple_repeat Simple_repeat 1 51 0 9 1073 639 313 149 61 chr5 64072848 64073310 -88463949 - MLT1D LTR MaLR 0 505 3 9 1073 447 106 0 0 chr5 64073579 64073645 -88463614 + (ATG)n Simple_repeat Simple_repeat 2 67 0 9 1073 1736 171 162 3 chr5 64073657 64073997 -88463262 - ORR1B1 LTR MaLR 0 394 1 9 1073 330 243 284 7 chr5 64073997 64074127 -88463132 - MTC LTR MaLR -51 368 199 9 1073 1211 58 15 18 chr5 64074145 64074476 -88462783 + (TTTC)n Simple_repeat Simple_repeat 1 330 0 9 1073 7095 165 38 29 chr5 64074701 64076386 -88460873 - Lx5 LINE L1 0 7050 5348 1 1073 279 143 0 87 chr5 64076359 64076428 -88460831 + Lx5 LINE L1 5241 5303 -574 1 1073 366 330 112 16 chr5 64076428 64076616 -88460643 - MTC LTR MaLR -211 210 5 9 1073 239 116 70 0 chr5 64076619 64076662 -88460597 + RMER30 DNA MER1_type 6 51 -151 1 1073 3045 77 13 0 chr5 64076912 64077303 -88459956 + MTA_Mm LTR MaLR 1 396 0 1 1073 292 262 0 55 chr5 64077434 64077543 -88459716 - Lx9 LINE L1 -563 7081 6979 1 1073 1199 209 94 34 chr5 64077550 64077847 -88459412 - RLTR46 LTR ERVK -5 315 1 1 1073 891 279 4 4 chr5 64077847 64078095 -88459164 - Lx9 LINE L1 -660 6984 6737 1 1073 388 286 29 0 chr5 64078101 64078206 -88459053 + Lx9 LINE L1 7086 7193 -451 1 1073 333 47 0 0 chr5 64078287 64078330 -88458929 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1073 306 0 0 0 chr5 64078473 64078507 -88458752 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1073 200 283 172 11 chr5 64079196 64079289 -88457970 - L2c LINE L2 -259 3128 3021 1 1073 659 49 0 0 chr5 64080775 64080857 -88456402 - L1Md_F2 LINE L1 -889 5695 5614 1 1073 7563 54 3 1 chr5 64080857 64081801 -88455458 + L1Md_F2 LINE L1 5637 6582 0 1 1073 549 345 157 13 chr5 64082457 64082992 -88454267 - L1ME2 LINE L1 -46 6978 6367 1 1073 518 335 125 23 chr5 64083265 64083753 -88453506 - L1ME2 LINE L1 -856 6150 5591 1 1073 293 281 211 14 chr5 64083910 64084423 -88452836 - L1ME2 LINE L1 -5493 1841 1228 1 1073 244 186 0 63 chr5 64086060 64086123 -88451136 + B1_Mur1 SINE Alu 91 149 0 1 1073 314 349 86 65 chr5 64086197 64086493 -88450766 + B4A SINE B4 2 290 -2 1 1073 626 309 59 22 chr5 64086924 64087195 -88450064 + B4 SINE B4 2 282 -10 1 1073 218 254 18 0 chr5 64087201 64087256 -88450003 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1073 333 100 0 0 chr5 64087654 64087704 -88449555 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1073 985 288 23 8 chr5 64089084 64089350 -88447909 - MLT1A0 LTR MaLR -88 277 8 1 1073 1465 195 114 12 chr5 64089559 64089902 -88447357 + ORR1C1 LTR MaLR 1 378 0 1 1073 460 293 39 6 chr5 64091113 64091295 -88445964 - L1MA4 LINE L1 -383 5917 5730 1 1073 341 354 48 40 chr5 64091475 64091725 -88445534 - ORR1E LTR MaLR -105 254 3 1 1073 2761 159 15 38 chr5 64092184 64092706 -88444553 - RLTR28 LTR ERVL -14 510 1 1 1073 230 259 0 53 chr5 64093921 64093978 -88443281 + tRNA-Thr-ACY_ tRNA tRNA 14 67 -10 1 1073 334 163 0 0 chr5 64093931 64093980 -88443279 + BC1_Mm scRNA scRNA 25 73 -79 1 1073 270 224 56 56 chr5 64093980 64094002 -88443257 + ID_B1 SINE B4 26 96 -128 1 1073 947 47 52 6 chr5 64094026 64094198 -88443061 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1074 1044 57 29 6 chr5 64094215 64094390 -88442869 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1074 417 309 37 52 chr5 64095678 64095709 -88441550 - B3A SINE B2 -6 192 167 1 1074 495 0 0 0 chr5 64095709 64095764 -88441495 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1074 417 309 37 52 chr5 64095764 64095923 -88441336 - B3A SINE B2 -32 166 5 1 1074 254 303 8 107 chr5 64095933 64096055 -88441204 - PB1D10 SINE Alu -7 110 1 1 1074 640 294 89 26 chr5 64096301 64096762 -88440497 - L1ME2z LINE L1 -10 6434 5945 1 1074 1171 35 14 14 chr5 64096888 64097034 -88440225 + B1_Mm SINE Alu 2 147 0 1 1074 1326 332 80 65 chr5 64097039 64097184 -88440075 - Lx9 LINE L1 -7 7466 7331 1 1074 219 114 0 0 chr5 64097184 64097219 -88440040 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 1074 1985 295 79 61 chr5 64097219 64097329 -88439930 - Lx9 LINE L1 -183 7461 7355 1 1074 531 0 0 0 chr5 64097329 64097388 -88439871 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1074 1985 294 79 60 chr5 64097388 64098288 -88438971 - Lx9 LINE L1 -290 7354 6437 1 1074 1852 184 11 28 chr5 64098292 64098645 -88438614 - RMER6D LTR ERVK 0 720 374 1 1074 353 290 3 45 chr5 64098844 64098967 -88438292 + L1MA4 LINE L1 5639 5778 -519 1 1074 396 103 0 0 chr5 64098991 64099049 -88438210 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1074 308 250 80 7 chr5 64099073 64099210 -88438049 + L1MA4 LINE L1 5795 5941 -359 1 1074 889 102 20 0 chr5 64099231 64099378 -88437881 + Lx2 LINE L1 6848 6997 0 1 1074 4141 150 14 9 chr5 64099410 64100063 -88437196 + RLTR17 LTR ERVK 1 656 -36 1 1074 1056 174 11 171 chr5 64100418 64100681 -88436578 - URR1A DNA MER1_type -1 225 5 1 1074 571 319 52 59 chr5 64100886 64101173 -88436086 + B4A SINE B4 1 285 -7 1 1074 540 73 0 0 chr5 64101232 64101314 -88435945 + (CAGAGA)n Simple_repeat Simple_repeat 1 82 0 1 1074 25 31 0 0 chr5 64102090 64102122 -88435137 + AT_rich Low_complexity Low_complexity 1 32 0 1 1074 407 283 160 65 chr5 64102466 64102741 -88434518 + MLT1A0 LTR MaLR 3 304 -61 1 1074 517 301 95 21 chr5 64102745 64103026 -88434233 + B4 SINE B4 5 275 -17 1 1074 688 316 82 4 chr5 64103184 64103454 -88433805 - B4A SINE B4 -1 291 1 1 1074 369 0 0 0 chr5 64103536 64103577 -88433682 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1074 467 271 7 70 chr5 64104737 64104880 -88432379 + RSINE1 SINE B4 32 165 0 1 1074 220 244 0 0 chr5 64104883 64104948 -88432311 + (TAA)n Simple_repeat Simple_repeat 1 65 0 1 1074 796 194 138 11 chr5 64105284 64105472 -88431787 - B3 SINE B2 0 216 5 1 1074 189 121 0 0 chr5 64105574 64105607 -88431652 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 1 1074 28 0 0 0 chr5 64106113 64106141 -88431118 + AT_rich Low_complexity Low_complexity 1 28 0 1 1074 23 0 0 0 chr5 64106249 64106272 -88430987 + AT_rich Low_complexity Low_complexity 1 23 0 1 1074 258 266 0 45 chr5 64106276 64106343 -88430916 + B3A SINE B2 2 65 -133 1 1074 356 280 131 33 chr5 64106445 64106567 -88430692 - MER82 DNA MER2_type -60 593 460 1 1074 288 318 96 38 chr5 64106582 64106739 -88430520 - MER82 DNA MER2_type -257 396 231 1 1074 1056 192 5 0 chr5 64106744 64106931 -88430328 + MTC LTR MaLR 234 421 0 1 1074 396 319 77 38 chr5 64106955 64107190 -88430069 - L1MC LINE L1 -3010 3136 2893 1 1074 399 239 62 37 chr5 64107252 64107413 -88429846 - L1M4 LINE L1 -3300 2846 2682 1 1074 309 309 62 80 chr5 64107464 64107640 -88429619 - L1MD LINE L1 -3491 2655 2483 1 1074 201 195 0 0 chr5 64107677 64107718 -88429541 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1074 526 250 28 35 chr5 64107718 64107859 -88429400 - RSINE1 SINE B4 -10 155 16 1 1074 545 28 0 0 chr5 64107968 64108040 -88429219 - L1Md_F2 LINE L1 -12 6570 6499 1 1074 1361 75 0 0 chr5 64108040 64108228 -88429031 + L1Md_F2 LINE L1 5866 6053 -529 1 1074 293 53 0 0 chr5 64108241 64108279 -88428980 - RMER19C LTR ERVK 0 611 574 1 1074 1379 119 28 0 chr5 64108281 64108499 -88428760 - Lx2 LINE L1 -8 6989 6766 1 1074 288 0 0 0 chr5 64108519 64108551 -88428708 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1 1074 2928 30 0 3 chr5 64108551 64108916 -88428343 - L1Md_F3 LINE L1 -26 6558 6195 1 1074 1724 243 61 100 chr5 64108917 64109506 -88427753 - RMER19C LTR ERVK -45 566 1 1 1074 33 43 0 0 chr5 64110007 64110054 -88427205 + AT_rich Low_complexity Low_complexity 1 47 0 1 1074 207 351 67 42 chr5 64110370 64110489 -88426770 - L2c LINE L2 -63 3324 3203 1 1074 234 0 0 0 chr5 64112383 64112409 -88424850 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1074 468 0 0 0 chr5 64113058 64113110 -88424149 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1074 588 65 0 0 chr5 64113110 64113186 -88424073 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1074 1432 296 51 12 chr5 64113194 64113253 -88424006 - Lx8 LINE L1 -294 7179 7117 1 1074 824 252 39 29 chr5 64113253 64113457 -88423802 - B3 SINE B2 -10 206 1 1 1074 1432 296 51 12 chr5 64113457 64113827 -88423432 - Lx8 LINE L1 -357 7116 6733 1 1074 755 247 60 30 chr5 64113830 64114030 -88423229 + Lx8 LINE L1 6497 6702 -771 1 1074 205 388 26 44 chr5 64114216 64114445 -88422814 + MIR SINE MIR 31 255 -7 1 1074 579 234 0 31 chr5 64114675 64114803 -88422456 - B1_Mur3 SINE Alu -25 124 1 1 1074 198 0 0 0 chr5 64116348 64116370 -88420889 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1074 1243 111 9 37 chr5 64116770 64116985 -88420274 - L1_Mus3 LINE L1 -8 6630 6422 1 1074 8104 54 5 3 chr5 64116994 64118028 -88419231 - L1Md_F2 LINE L1 0 6582 5547 1 1074 4335 150 59 14 chr5 64118035 64118938 -88418321 - L1Md_F LINE L1 -5569 1155 208 1 1074 414 0 0 0 chr5 64119161 64119207 -88418052 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1074 521 15 15 0 chr5 64120696 64120762 -88416497 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 1 1074 286 273 102 36 chr5 64121212 64121349 -88415910 - L2a LINE L2 -4 3422 3277 1 1074 374 285 57 0 chr5 64121411 64121534 -88415725 - L2a LINE L2 -270 3156 3027 1 1074 598 279 6 31 chr5 64121679 64121838 -88415421 + RSINE1 SINE B4 11 165 0 1 1074 285 321 114 0 chr5 64121930 64122061 -88415198 - B4A SINE B4 -145 147 2 1 1074 1124 111 0 6 chr5 64122092 64122264 -88414995 + B2_Mm2 SINE B2 1 171 -24 1 1074 606 28 0 0 chr5 64122274 64122346 -88414913 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 1 1074 283 265 23 107 chr5 64122426 64122557 -88414702 + L2c LINE L2 3268 3387 0 1 1074 231 330 52 16 chr5 64122661 64122852 -88414407 - MER33 DNA MER1_type -95 229 32 1 1074 2741 40 9 0 chr5 64124073 64124402 -88412857 + L1Md_F3 LINE L1 6253 6584 0 1 1074 225 0 0 0 chr5 64124462 64124487 -88412772 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 1074 351 0 0 0 chr5 64124487 64124525 -88412734 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1074 1130 80 56 0 chr5 64124956 64125118 -88412141 + L1_Mus2 LINE L1 6395 6565 -1 1 1074 1497 28 0 0 chr5 64125135 64125313 -88411946 + (GGAGA)n Simple_repeat Simple_repeat 1 178 0 1 1074 566 81 35 0 chr5 64125313 64125400 -88411859 + (GGAAA)n Simple_repeat Simple_repeat 4 93 0 1 1074 445 267 138 6 chr5 64125921 64125952 -88411307 - Lx8 LINE L1 -23 7450 7420 1 1074 207 0 0 0 chr5 64125952 64125975 -88411284 + (TCTCCC)n Simple_repeat Simple_repeat 2 24 0 1 1074 435 63 0 0 chr5 64125978 64126041 -88411218 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 1 1074 445 267 138 6 chr5 64126041 64126186 -88411073 - Lx8 LINE L1 -54 7419 7254 1 1074 338 314 269 22 chr5 64126180 64126410 -88410849 - Lx8 LINE L1 -996 6477 6191 1 1074 1007 290 74 19 chr5 64127916 64128239 -88409020 + MTE2b LTR MaLR 1 341 -38 1 1074 442 230 68 35 chr5 64128690 64128935 -88408324 - L1M2 LINE L1 -209 5668 5438 1 1074 556 250 26 16 chr5 64129037 64129228 -88408031 - L1M2 LINE L1 -871 5272 5080 1 1074 1403 8 20 0 chr5 64129433 64129678 -88407581 + (TAGA)n Simple_repeat Simple_repeat 1 249 0 1 1074 402 286 137 42 chr5 64129681 64129893 -88407366 + B4A SINE B4 2 233 -59 1 1074 313 80 53 13 chr5 64130250 64130326 -88406933 - Lx4A LINE L1 0 7058 6980 2 1074 180 0 0 0 chr5 64130627 64130647 -88406612 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1074 826 294 154 26 chr5 64131432 64132196 -88405063 - L1MB8 LINE L1 -51 6127 5266 2 1074 429 287 19 25 chr5 64132491 64132652 -88404607 + RSINE1 SINE B4 4 163 -2 2 1074 468 0 0 0 chr5 64132700 64132752 -88404507 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1074 238 231 19 0 chr5 64132752 64132804 -88404455 - L1MB8 LINE L1 -1991 4155 4103 2 1074 1384 311 76 47 chr5 64132810 64133898 -88403361 - L1MB8 LINE L1 -2148 3998 2879 2 1074 1193 177 5 18 chr5 64134167 64134386 -88402873 + B3 SINE B2 1 216 0 2 1074 26 30 0 0 chr5 64134386 64134419 -88402840 + AT_rich Low_complexity Low_complexity 1 33 0 2 1074 416 218 35 43 chr5 64135040 64135155 -88402104 - B3A SINE B2 -80 118 5 2 1074 249 143 0 0 chr5 64135451 64135493 -88401766 - Lx2B LINE L1 -622 6378 6337 2 1074 661 141 39 0 chr5 64135493 64135621 -88401638 + Lx LINE L1 6522 6654 0 2 1074 180 97 0 0 chr5 64136248 64136279 -88400980 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1074 513 0 0 0 chr5 64136627 64136684 -88400575 + (TGG)n Simple_repeat Simple_repeat 1 57 0 2 1074 189 0 0 0 chr5 64136685 64136706 -88400553 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 2 1074 22 35 0 0 chr5 64136728 64136757 -88400502 + AT_rich Low_complexity Low_complexity 1 29 0 2 1074 1077 102 6 18 chr5 64136872 64137041 -88400218 + B2_Mm2 SINE B2 2 168 -27 2 1074 790 219 21 177 chr5 64137546 64137874 -88399385 - ORR1C2 LTR MaLR -107 277 1 2 1074 205 315 11 21 chr5 64138351 64138445 -88398814 - L2 LINE L2 -384 3035 2943 2 1074 263 265 167 0 chr5 64138551 64138713 -88398546 - L2 LINE L2 -527 2892 2704 2 1074 1191 239 76 36 chr5 64138811 64139167 -88398092 + ORR1D2 LTR MaLR 1 370 0 2 1074 222 37 0 0 chr5 64140553 64140580 -88396679 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1074 367 255 68 22 chr5 64140597 64140909 -88396350 + L1MA4 LINE L1 5118 5479 -821 2 1074 9621 84 2 1 chr5 64140916 64142963 -88394296 + L1_Mus1 LINE L1 4518 6566 -1 2 1074 263 289 17 17 chr5 64142954 64143070 -88394189 + L1MA4 LINE L1 5472 5587 -716 2 1074 301 308 7 65 chr5 64143300 64143317 -88393942 + L1MA4 LINE L1 5787 5803 -497 2 1074 2056 194 73 35 chr5 64143317 64143825 -88393434 - RLTR11A2 LTR ERVK 0 527 1 2 1074 301 308 7 65 chr5 64143825 64143946 -88393313 + L1MA4 LINE L1 5804 5917 -383 2 1074 385 324 88 0 chr5 64144174 64144310 -88392949 + RSINE1 SINE B4 10 157 -8 2 1074 21 0 0 0 chr5 64144393 64144414 -88392845 + AT_rich Low_complexity Low_complexity 1 21 0 2 1074 1543 238 54 5 chr5 64144493 64144885 -88392374 + MTD LTR MaLR 1 411 -8 2 1074 263 281 49 0 chr5 64144886 64144968 -88392291 - B4 SINE B4 -197 95 10 2 1074 522 0 0 0 chr5 64144982 64145040 -88392219 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 1074 225 0 0 0 chr5 64145040 64145064 -88392195 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1074 225 330 73 36 chr5 64145195 64145212 -88392047 - B4A SINE B4 -177 115 102 2 1074 2817 66 79 3 chr5 64145212 64145590 -88391669 + MTB_Mm LTR MaLR 1 407 0 2 1074 225 330 73 36 chr5 64145590 64145682 -88391577 - B4A SINE B4 -191 101 2 2 1074 1524 200 58 15 chr5 64146582 64146912 -88390347 - ORR1D2 LTR MaLR -1 369 26 2 1074 522 267 34 105 chr5 64147445 64147654 -88389605 - MTEa LTR MaLR -13 366 173 2 1074 601 189 138 14 chr5 64147716 64147861 -88389398 - MTEa LTR MaLR -201 178 16 2 1074 4620 59 2 2 chr5 64148230 64148805 -88388454 - L1_Mus1 LINE L1 0 6567 5993 2 1074 387 0 0 0 chr5 64149583 64149626 -88387633 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1074 385 303 57 0 chr5 64151088 64151210 -88386049 + RSINE1 SINE B4 1 129 -36 2 1074 315 0 0 0 chr5 64151211 64151246 -88386013 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1074 452 319 40 40 chr5 64151790 64151966 -88385293 + B3 SINE B2 1 176 -40 2 1074 396 0 0 0 chr5 64152414 64152458 -88384801 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1074 635 196 29 50 chr5 64152458 64152598 -88384661 - RSINE1 SINE B4 -25 140 4 2 1074 328 306 139 23 chr5 64152794 64153139 -88384120 - LTR79 LTR ERVL -15 512 128 2 1074 1117 161 9 44 chr5 64154986 64155213 -88382046 - URR1B DNA MER1_type 0 225 7 2 1074 849 249 10 5 chr5 64155279 64155485 -88381774 + B3 SINE B2 9 215 -1 2 1074 390 21 0 0 chr5 64155860 64155907 -88381352 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1074 199 345 18 0 chr5 64156607 64156717 -88380542 + L2 LINE L2 2410 2521 -898 2 1074 438 290 99 46 chr5 64156931 64157083 -88380176 + RSINE1 SINE B4 3 162 -3 2 1074 333 62 0 0 chr5 64157083 64157131 -88380128 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 2 1074 573 258 139 27 chr5 64157155 64157342 -88379917 - B3 SINE B2 -7 209 2 2 1074 592 284 107 4 chr5 64159219 64159491 -88377768 + MER44A DNA MER2_type 1 300 -39 2 1074 420 248 74 27 chr5 64159519 64159668 -88377591 - MTD LTR MaLR -13 406 251 2 1074 206 32 32 0 chr5 64159921 64159952 -88377307 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2 1074 517 277 0 0 chr5 64159953 64160072 -88377187 - PB1D9 SINE Alu -1 119 1 2 1074 912 87 0 0 chr5 64160111 64160260 -88376999 + (TC)n Simple_repeat Simple_repeat 2 150 0 2 1074 390 91 0 0 chr5 64161269 64161324 -88375935 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2 1074 225 272 107 36 chr5 64163266 64163434 -88373825 + MLT2D LTR ERVL 110 289 -125 2 1074 23 0 0 0 chr5 64163471 64163494 -88373765 + AT_rich Low_complexity Low_complexity 1 23 0 2 1074 21 0 0 0 chr5 64164620 64164641 -88372618 + AT_rich Low_complexity Low_complexity 1 21 0 2 1074 837 144 19 0 chr5 64165320 64165480 -88371779 + CT-rich Low_complexity Low_complexity 1 163 0 2 1074 387 0 0 0 chr5 64167140 64167183 -88370076 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1074 268 204 69 79 chr5 64167462 64167563 -88369696 - MLT1A LTR MaLR -264 110 11 2 1074 186 43 0 0 chr5 64168385 64168408 -88368851 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1074 38 0 0 20 chr5 64168517 64168554 -88368705 + AT_rich Low_complexity Low_complexity 1 37 0 2 1074 1288 105 17 0 chr5 64168554 64168735 -88368524 + B2_Mm2 SINE B2 3 186 -9 2 1074 38 0 0 20 chr5 64168735 64168746 -88368513 + AT_rich Low_complexity Low_complexity 1 11 0 2 1074 327 375 24 78 chr5 64168783 64168844 -88368415 - Lx9 LINE L1 -99 7374 7329 2 1074 450 36 0 0 chr5 64168844 64168900 -88368359 + (CATA)n Simple_repeat Simple_repeat 3 58 0 2 1074 619 311 2 8 chr5 64168900 64169093 -88368166 - Lx9 LINE L1 -187 7457 7134 2 1074 216 97 0 0 chr5 64169096 64169127 -88368132 + (CAGAA)n Simple_repeat Simple_repeat 4 34 0 2 1074 197 375 0 0 chr5 64169173 64169245 -88368014 - MER5A DNA MER1_type -58 131 60 2 1074 423 0 0 0 chr5 64169251 64169298 -88367961 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1074 355 276 66 15 chr5 64170127 64170263 -88366996 + B1F SINE Alu 1 143 -6 2 1074 216 231 19 0 chr5 64170263 64170315 -88366944 + ID4 SINE ID 2 54 -29 2 1074 314 278 10 58 chr5 64170493 64170596 -88366663 - MER5A DNA MER1_type -66 123 26 2 1074 379 256 22 0 chr5 64170947 64171037 -88366222 - B4 SINE B4 -195 97 6 2 1074 298 188 74 12 chr5 64171155 64171236 -88366023 + B4 SINE B4 1 86 -206 2 1074 416 186 175 10 chr5 64171304 64171345 -88365914 - B3 SINE B2 -95 121 81 2 1074 465 19 0 0 chr5 64171345 64171399 -88365860 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1074 416 186 175 10 chr5 64171399 64171460 -88365799 - B3 SINE B2 -136 80 2 2 1074 182 172 0 0 chr5 64171871 64171900 -88365359 - MIR SINE MIR -149 113 85 2 1074 274 114 50 12 chr5 64172625 64172705 -88364554 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1074 660 209 17 0 chr5 64172813 64172985 -88364274 + (TA)n Simple_repeat Simple_repeat 1 175 0 2 1074 27 0 0 0 chr5 64172985 64173012 -88364247 + AT_rich Low_complexity Low_complexity 1 27 0 2 1074 185 211 0 0 chr5 64173232 64173270 -88363989 + MIRc SINE MIR 174 211 -57 2 1074 1308 228 36 41 chr5 64173295 64173881 -88363378 + RLTR20D LTR ERVK 49 568 0 2 1074 927 176 0 7 chr5 64174565 64174714 -88362545 + B1_Mur1 SINE Alu 1 148 -1 2 1074 664 256 126 16 chr5 64174848 64175031 -88362228 + ID_B1 SINE B4 2 204 -20 2 1074 667 294 66 100 chr5 64175046 64175425 -88361834 - MTE2a LTR MaLR -43 376 1 2 1074 345 47 0 0 chr5 64176041 64176084 -88361175 + (T)n Simple_repeat Simple_repeat 1 43 0 2 1074 1253 64 0 6 chr5 64176325 64176497 -88360762 + B2_Mm2 SINE B2 1 171 -24 2 1074 288 170 0 0 chr5 64176501 64176554 -88360705 + GA-rich Low_complexity Low_complexity 2 54 0 2 1074 1021 263 46 76 chr5 64177670 64178040 -88359219 + MTEb LTR MaLR 8 366 -13 2 1074 415 82 14 14 chr5 64178040 64178114 -88359145 + (TA)n Simple_repeat Simple_repeat 2 75 0 2 1074 513 263 124 4 chr5 64178124 64178313 -88358946 + B3A SINE B2 6 216 0 2 1074 1542 255 3 11 chr5 64178376 64178745 -88358514 + ORR1D1 LTR MaLR 1 366 -8 2 1074 252 152 87 0 chr5 64178866 64178912 -88358347 - Ricksha_c DNA MuDR -1125 923 874 2 1074 246 32 0 0 chr5 64178917 64178948 -88358311 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1074 715 253 75 5 chr5 64179828 64180015 -88357244 + B3 SINE B2 2 201 -15 2 1074 196 214 0 23 chr5 64181160 64181203 -88356056 + L2b LINE L2 3334 3375 0 2 1074 710 10 0 39 chr5 64181522 64181625 -88355634 + (TTCTC)n Simple_repeat Simple_repeat 5 103 0 2 1074 798 165 18 0 chr5 64181614 64181784 -88355475 + CT-rich Low_complexity Low_complexity 6 178 0 2 1074 438 108 0 0 chr5 64181838 64181903 -88355356 + (TAA)n Simple_repeat Simple_repeat 2 66 0 2 1074 181 321 76 13 chr5 64181951 64182030 -88355229 - MER5A DNA MER1_type -94 95 12 2 1074 1186 214 123 20 chr5 64183134 64183508 -88353751 + MTD LTR MaLR 1 398 -21 2 1074 989 312 55 28 chr5 64186243 64186715 -88350544 - RMER5 LTR ERV1 -12 522 38 2 1074 333 131 0 0 chr5 64186901 64186962 -88350297 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1074 1184 68 0 0 chr5 64187071 64187217 -88350042 - B1_Mus2 SINE Alu 0 147 2 3 1074 294 188 176 0 chr5 64187297 64187382 -88349877 - RMER5 LTR ERV1 -66 468 369 3 1074 516 248 43 0 chr5 64187542 64187659 -88349600 + B1_Mur1 SINE Alu 5 126 -23 3 1074 534 220 55 0 chr5 64187950 64188059 -88349200 + PB1D10 SINE Alu 3 117 0 3 1074 279 229 9 19 chr5 64189462 64189492 -88347767 + polypurine Low_complexity Low_complexity 2 31 0 3 1074 1131 124 0 0 chr5 64189492 64189669 -88347590 + (GGGA)n Simple_repeat Simple_repeat 4 180 0 3 1074 279 229 9 19 chr5 64189669 64189745 -88347514 + GA-rich Low_complexity Low_complexity 32 106 0 3 1074 1065 182 16 9 chr5 64189758 64189977 -88347282 - MTD LTR MaLR -14 405 196 3 1074 484 193 9 9 chr5 64189977 64190092 -88347167 + CT-rich Low_complexity Low_complexity 4 118 0 3 1074 743 177 8 0 chr5 64190159 64190283 -88346976 - B3 SINE B2 -86 130 6 3 1074 720 224 75 12 chr5 64190294 64190483 -88346776 - MTD LTR MaLR -208 211 5 3 1074 777 22 0 0 chr5 64190500 64190591 -88346668 + (GGGA)n Simple_repeat Simple_repeat 2 92 0 3 1074 32 0 0 0 chr5 64191864 64191896 -88345363 + AT_rich Low_complexity Low_complexity 1 32 0 3 1074 680 64 0 11 chr5 64194509 64194604 -88342655 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 3 1074 517 236 130 54 chr5 64194842 64195026 -88342233 - B3A SINE B2 0 198 1 3 1074 219 69 0 0 chr5 64201498 64201527 -88335732 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1074 261 0 0 0 chr5 64202175 64202204 -88335055 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1074 528 16 0 0 chr5 64202470 64202531 -88334728 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1074 21 0 0 0 chr5 64204465 64204486 -88332773 + AT_rich Low_complexity Low_complexity 1 21 0 3 1074 207 0 0 0 chr5 64205451 64205474 -88331785 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 3 1074 967 74 20 81 chr5 64206714 64206862 -88330397 + B1_Mus2 SINE Alu 1 139 -8 3 1074 441 0 0 0 chr5 64206862 64206911 -88330348 + (CATA)n Simple_repeat Simple_repeat 4 52 0 3 1074 1299 42 0 0 chr5 64207010 64207176 -88330083 + (CA)n Simple_repeat Simple_repeat 1 166 0 3 1074 835 120 98 180 chr5 64207651 64207895 -88329364 - URR1A DNA MER1_type 0 226 3 3 1074 537 321 171 52 chr5 64208619 64209059 -88328200 - MLT1H LTR MaLR -39 510 19 3 1074 184 330 57 33 chr5 64209129 64209251 -88328008 - MIRb SINE MIR -114 154 30 3 1074 560 245 6 64 chr5 64209584 64209741 -88327518 - B1_Mur1 SINE Alu 0 149 2 3 1074 182 338 26 0 chr5 64210008 64210085 -88327174 + MIRb SINE MIR 1 79 -189 3 1074 1001 144 0 6 chr5 64210608 64210783 -88326476 + (GAAA)n Simple_repeat Simple_repeat 4 177 0 3 1074 653 201 5 0 chr5 64211684 64211887 -88325372 + (TA)n Simple_repeat Simple_repeat 1 204 0 3 1074 274 301 96 6 chr5 64212923 64213100 -88324159 - LTR82B Low_complexity ERVL -196 634 442 3 1074 1166 289 7 34 chr5 64213591 64213885 -88323374 + B4 SINE B4 1 286 -6 3 1074 228 219 92 40 chr5 64214493 64214569 -88322690 - MIR3 SINE MIR -14 194 115 3 1074 297 0 0 0 chr5 64214844 64214877 -88322382 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1074 351 0 0 0 chr5 64214877 64214915 -88322344 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1074 525 144 0 0 chr5 64216182 64216272 -88320987 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 1074 274 31 0 0 chr5 64216272 64216304 -88320955 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1074 376 348 176 0 chr5 64216719 64216929 -88320330 + B4A SINE B4 28 274 -18 3 1074 231 36 0 0 chr5 64216933 64216961 -88320298 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1074 315 273 63 9 chr5 64217948 64218059 -88319200 - MER57D LTR ERV1 -131 280 164 3 1074 1904 170 22 34 chr5 64218742 64219157 -88318102 - RMER17C LTR ERVK 0 410 1 3 1074 387 0 0 0 chr5 64219341 64219384 -88317875 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1074 296 323 101 0 chr5 64219725 64219824 -88317435 - Lx8 LINE L1 -228 7245 7137 3 1074 247 312 20 40 chr5 64220965 64221065 -88316194 - PB1D10 SINE Alu -14 103 6 3 1074 307 280 48 48 chr5 64221122 64221227 -88316032 + PB1D10 SINE Alu 13 117 0 3 1074 314 23 0 23 chr5 64221644 64221688 -88315571 + (GTTTG)n Simple_repeat Simple_repeat 5 47 0 3 1074 1136 292 3 7 chr5 64223602 64223888 -88313371 + B4 SINE B4 8 292 0 3 1074 205 167 367 13 chr5 64224003 64224082 -88313177 + MIRb SINE MIR 54 160 -108 3 1074 228 245 198 21 chr5 64224091 64224187 -88313072 + PB1D9 SINE Alu 1 113 -7 3 1074 946 287 141 16 chr5 64224318 64224816 -88312443 + L1MB7 LINE L1 5436 5981 -310 3 1074 580 231 96 96 chr5 64224856 64224932 -88312327 + ID_B1 SINE B4 20 95 -129 3 1074 320 271 153 15 chr5 64224932 64225052 -88312207 + B1F1 SINE Alu 1 139 -10 3 1074 531 0 0 0 chr5 64225052 64225111 -88312148 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1075 324 0 0 0 chr5 64225489 64225525 -88311734 + (TTG)n Simple_repeat Simple_repeat 2 37 0 3 1075 292 154 321 19 chr5 64225758 64225864 -88311395 - B1_Mur2 SINE Alu -1 148 11 3 1075 481 193 33 0 chr5 64226158 64226308 -88310951 + (TA)n Simple_repeat Simple_repeat 2 156 0 3 1075 333 0 0 0 chr5 64226308 64226345 -88310914 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1075 240 35 0 0 chr5 64227044 64227073 -88310186 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 1075 335 272 92 33 chr5 64227777 64227929 -88309330 + RSINE1 SINE B4 5 165 0 3 1075 405 198 0 0 chr5 64227929 64228015 -88309244 + (CA)n Simple_repeat Simple_repeat 1 86 0 3 1075 263 304 43 0 chr5 64228154 64228246 -88309013 - MER103 DNA DNA -68 98 3 3 1075 315 0 0 0 chr5 64228322 64228357 -88308902 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1075 467 269 52 56 chr5 64228491 64228723 -88308536 - MLT1B LTR MaLR -83 307 77 3 1075 1400 152 4 26 chr5 64228929 64229159 -88308100 + URR1B DNA MER1_type 1 225 0 3 1075 235 250 36 95 chr5 64229180 64229264 -88307995 - MLT1A LTR MaLR -212 162 84 3 1075 278 132 0 19 chr5 64229430 64229484 -88307775 + Lx LINE L1 6587 6639 -15 3 1075 379 293 171 36 chr5 64229774 64230025 -88307234 + MLT1A0 LTR MaLR 41 325 -40 3 1075 597 132 239 26 chr5 64230026 64230143 -88307116 + B1_Mur3 SINE Alu 2 143 -6 3 1075 341 318 132 19 chr5 64230738 64230889 -88306370 + MER2 DNA MER2_type 55 227 -118 3 1075 432 0 0 0 chr5 64230889 64230937 -88306322 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1075 341 318 132 19 chr5 64230937 64231042 -88306217 + MER2 DNA MER2_type 228 340 -5 3 1075 990 122 0 0 chr5 64231671 64231851 -88305408 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1075 714 180 0 0 chr5 64231862 64232040 -88305219 + (CA)n Simple_repeat Simple_repeat 2 179 0 3 1075 275 265 10 30 chr5 64232052 64232153 -88305106 + (CATA)n Simple_repeat Simple_repeat 2 100 0 3 1075 206 194 14 0 chr5 64232164 64232236 -88305023 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 1075 824 174 212 6 chr5 64232537 64232716 -88304543 + B3 SINE B2 1 216 0 3 1075 243 0 0 0 chr5 64232937 64232964 -88304295 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1075 1018 278 46 11 chr5 64233001 64233281 -88303978 - B4 SINE B4 -2 290 1 3 1075 188 111 28 0 chr5 64233484 64233520 -88303739 + (TTCTC)n Simple_repeat Simple_repeat 1 37 0 3 1075 574 273 203 35 chr5 64233539 64233972 -88303287 - L1ME2z LINE L1 -285 6159 5651 3 1075 22 0 0 0 chr5 64234121 64234143 -88303116 + AT_rich Low_complexity Low_complexity 1 22 0 3 1075 778 123 32 129 chr5 64234143 64234329 -88302930 - Lx LINE L1 -8 6646 6479 3 1075 452 275 74 10 chr5 64234397 64234599 -88302660 - Charlie4a DNA MER1_type -263 245 31 3 1075 339 301 81 22 chr5 64234777 64234913 -88302346 + B4A SINE B4 10 153 -139 3 1075 556 176 41 6 chr5 64234980 64235151 -88302108 + (TA)n Simple_repeat Simple_repeat 2 178 0 3 1075 21 0 0 0 chr5 64235341 64235362 -88301897 + AT_rich Low_complexity Low_complexity 1 21 0 3 1075 401 252 95 16 chr5 64235957 64236254 -88301005 + L1MB1 LINE L1 5113 5443 -725 3 1075 466 326 0 0 chr5 64236254 64236383 -88300876 + B1F1 SINE Alu 5 133 -16 3 1075 232 252 99 30 chr5 64236383 64236444 -88300815 + L1MB1 LINE L1 5444 5513 -655 3 1075 405 317 178 0 chr5 64236493 64236701 -88300558 + ORR1E LTR MaLR 62 306 -53 3 1075 422 335 68 59 chr5 64236702 64237041 -88300218 + ORR1E LTR MaLR 1 342 -17 3 1075 577 296 115 84 chr5 64237151 64237584 -88299675 + L1MB1 LINE L1 5568 6036 -132 3 1075 560 219 192 0 chr5 64237584 64237735 -88299524 + B3A SINE B2 2 181 -17 3 1075 555 296 115 84 chr5 64237735 64237883 -88299376 + L1MB1 LINE L1 6037 6167 -1 3 1075 222 118 0 0 chr5 64238107 64238141 -88299118 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1075 244 238 31 16 chr5 64239357 64239421 -88297838 + (TATG)n Simple_repeat Simple_repeat 4 68 0 3 1075 4521 10 2 0 chr5 64239461 64239953 -88297306 + MT2_Mm LTR ERVL 1 493 0 3 1075 41528 15 14 0 chr5 64239953 64245240 -88292019 + MERVL-int LTR ERVL 1 5360 -125 3 1075 362 167 46 35 chr5 64245240 64245327 -88291932 + ORR1A3-int LTR MaLR 553 640 -1323 3 1075 321 0 0 0 chr5 64245327 64245365 -88291894 + MERVL-int LTR ERVL 5448 5485 0 3 1075 4521 10 2 0 chr5 64245365 64245857 -88291402 + MT2_Mm LTR ERVL 1 493 0 3 1075 850 221 108 0 chr5 64245890 64246085 -88291174 - B4 SINE B4 -76 216 1 3 1075 439 250 27 18 chr5 64246333 64246443 -88290816 - RSINE1 SINE B4 -52 113 3 3 1075 1143 62 7 0 chr5 64247236 64247381 -88289878 + B1_Mus1 SINE Alu 2 147 -1 3 1075 244 267 0 16 chr5 64247394 64247455 -88289804 + B3 SINE B2 148 207 -9 3 1075 288 264 43 11 chr5 64248213 64248305 -88288954 + B1F SINE Alu 42 136 -13 3 1075 233 237 33 17 chr5 64248353 64248400 -88288859 + ID4 SINE ID 23 71 -12 3 1075 297 0 0 0 chr5 64248400 64248433 -88288826 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1075 233 237 33 17 chr5 64248433 64248445 -88288814 + ID4 SINE ID 72 83 0 3 1075 258 312 93 25 chr5 64248507 64248668 -88288591 - HAL1 LINE L1 -2015 492 321 3 1075 264 30 0 0 chr5 64248822 64248855 -88288404 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 4 1075 180 0 0 0 chr5 64249281 64249301 -88287958 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1075 369 0 0 0 chr5 64249421 64249462 -88287797 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 4 1075 796 295 65 51 chr5 64250578 64250932 -88286327 - MLT1A LTR MaLR -6 368 10 4 1075 657 261 123 30 chr5 64251509 64251777 -88285482 - MLT-int LTR MaLR 0 1735 1443 4 1075 929 99 19 32 chr5 64251840 64251996 -88285263 - B2_Mm2 SINE B2 -5 190 37 4 1075 317 324 40 40 chr5 64251988 64252139 -88285120 - MLT-int LTR MaLR -341 1394 1244 4 1075 1476 279 68 45 chr5 64252411 64253117 -88284142 - MLT-int LTR MaLR -955 780 59 4 1075 355 274 0 19 chr5 64253156 64253264 -88283995 - MLT1A1 LTR MaLR -3 405 300 4 1075 363 326 100 90 chr5 64253708 64254008 -88283251 + MLT1A0 LTR MaLR 24 326 -39 4 1075 339 327 92 29 chr5 64254018 64254159 -88283100 - MLT1A1 LTR MaLR -411 184 28 4 1075 2400 90 19 0 chr5 64254159 64254480 -88282779 - ORR1A2 LTR MaLR 0 327 1 4 1075 339 327 92 29 chr5 64254480 64254511 -88282748 - MLT1A1 LTR MaLR -568 27 1 4 1075 342 0 0 0 chr5 64254609 64254647 -88282612 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1075 1012 189 63 45 chr5 64254660 64254882 -88282377 + URR1A DNA MER1_type 1 226 0 4 1075 239 301 64 16 chr5 64254901 64255026 -88282233 + MER5A1 DNA MER1_type 25 155 -11 4 1075 555 267 148 18 chr5 64255470 64255699 -88281560 - MER2 DNA MER2_type 0 345 87 4 1075 257 315 148 27 chr5 64255766 64256063 -88281196 - LTR82A LTR ERVL -303 569 237 4 1075 540 239 116 58 chr5 64256461 64256719 -88280540 + B4 SINE B4 2 274 -18 4 1075 879 73 0 0 chr5 64256739 64256863 -88280396 + (CA)n Simple_repeat Simple_repeat 2 125 0 4 1075 24 0 0 0 chr5 64257028 64257052 -88280207 + AT_rich Low_complexity Low_complexity 1 24 0 4 1075 378 0 0 0 chr5 64257482 64257524 -88279735 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1075 225 154 0 0 chr5 64257923 64257962 -88279297 + A-rich Low_complexity Low_complexity 1 39 0 4 1075 214 255 0 0 chr5 64258149 64258200 -88279059 - B3A SINE B2 -58 140 90 4 1075 483 18 0 0 chr5 64258693 64258749 -88278510 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1075 764 269 71 25 chr5 64259267 64259591 -88277668 + MER63C DNA AcHobo 370 708 -222 4 1075 224 286 0 0 chr5 64259641 64259690 -88277569 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1075 397 262 29 10 chr5 64259696 64259800 -88277459 - B4A SINE B4 -186 106 1 4 1075 1088 130 52 31 chr5 64260127 64260318 -88276941 + B2_Mm2 SINE B2 1 195 0 4 1075 203 161 0 0 chr5 64260320 64260351 -88276908 + A-rich Low_complexity Low_complexity 3 33 0 4 1075 270 273 15 0 chr5 64260892 64260958 -88276301 + G-rich Low_complexity Low_complexity 4 70 0 4 1075 968 140 81 17 chr5 64261724 64261898 -88275361 + B2_Mm1t SINE B2 1 185 -8 4 1075 604 291 96 36 chr5 64262115 64262450 -88274809 + ORR1E LTR MaLR 1 355 -4 4 1075 432 104 0 0 chr5 64262534 64262601 -88274658 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1075 295 285 7 7 chr5 64262745 64262890 -88274369 + (TA)n Simple_repeat Simple_repeat 2 146 0 4 1075 403 279 77 13 chr5 64262907 64263063 -88274196 + B4A SINE B4 126 291 -1 4 1075 586 269 25 30 chr5 64263142 64263341 -88273918 + B3 SINE B2 10 207 -9 4 1075 296 340 0 0 chr5 64264865 64264962 -88272297 + MER3 DNA MER1_type 113 209 0 4 1075 242 273 0 0 chr5 64264919 64264974 -88272285 - MER3 DNA MER1_type -119 90 36 4 1075 542 257 37 90 chr5 64265394 64265582 -88271677 - B3A SINE B2 -6 192 15 4 1075 574 243 107 23 chr5 64267042 64267219 -88270040 - MLT1A0 LTR MaLR -10 355 164 4 1075 381 234 102 9 chr5 64267231 64267339 -88269920 - MLT1A0 LTR MaLR -240 125 8 4 1075 499 254 75 0 chr5 64268007 64268141 -88269118 - RSINE1 SINE B4 -15 150 7 4 1075 267 279 48 9 chr5 64268295 64268400 -88268859 + MER5A DNA MER1_type 1 109 -80 4 1075 343 321 36 26 chr5 64268473 64268668 -88268591 + ORR1E LTR MaLR 1 197 -162 4 1075 1058 323 77 27 chr5 64269559 64270081 -88267178 + MER82 DNA MER2_type 103 650 -3 4 1075 275 205 179 0 chr5 64270420 64270498 -88266761 + PB1D10 SINE Alu 17 108 -9 4 1075 267 241 0 0 chr5 64270504 64270558 -88266701 + GA-rich Low_complexity Low_complexity 3 56 0 4 1075 198 0 0 0 chr5 64270792 64270814 -88266445 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 4 1075 327 248 0 98 chr5 64270819 64270931 -88266328 - B1F1 SINE Alu 0 149 49 4 1075 244 302 3 47 chr5 64271329 64271447 -88265812 - MLT1C LTR MaLR 0 467 274 4 1075 237 320 26 90 chr5 64272012 64272060 -88265199 - MIRb SINE MIR -6 262 214 4 1075 2096 164 13 44 chr5 64272060 64272450 -88264809 - ORR1C1 LTR MaLR 0 378 1 4 1075 237 320 26 90 chr5 64272450 64272590 -88264669 - MIRb SINE MIR -55 213 86 4 1075 397 283 56 28 chr5 64272765 64272943 -88264316 - MER21B LTR ERV1 -117 746 564 4 1075 271 232 12 47 chr5 64272962 64273048 -88264211 - MER21B LTR ERV1 -346 517 435 4 1075 1020 79 0 0 chr5 64273274 64273413 -88263846 + (CATA)n Simple_repeat Simple_repeat 4 142 0 4 1075 257 284 99 18 chr5 64273435 64273546 -88263713 - MER21B LTR ERV1 -646 217 98 4 1075 453 246 17 9 chr5 64273843 64273958 -88263301 + PB1D10 SINE Alu 1 116 -1 4 1075 581 232 23 193 chr5 64274378 64274683 -88262576 + MER2 DNA MER2_type 1 253 -92 4 1075 4072 89 36 2 chr5 64274935 64275497 -88261762 - MT2B2 LTR ERVL 0 584 4 4 1075 676 275 23 0 chr5 64276868 64277039 -88260220 + ID_B1 SINE B4 36 210 -14 4 1075 234 174 14 42 chr5 64277062 64277134 -88260125 + GA-rich Low_complexity Low_complexity 3 72 0 4 1075 362 263 17 17 chr5 64277152 64277268 -88259991 + PB1D10 SINE Alu 1 116 -1 4 1075 258 234 15 15 chr5 64277630 64277695 -88259564 + MER5A DNA MER1_type 39 103 -86 4 1075 188 345 12 0 chr5 64278388 64278472 -88258787 + MIR SINE MIR 159 243 -19 4 1075 826 249 21 16 chr5 64278503 64278691 -88258568 - B3A SINE B2 0 198 10 4 1075 370 302 114 23 chr5 64278737 64278913 -88258346 - MIRb SINE MIR -39 229 38 4 1075 21 0 0 0 chr5 64278990 64279011 -88258248 + AT_rich Low_complexity Low_complexity 1 21 0 4 1075 3397 83 22 0 chr5 64279047 64279505 -88257754 + MT2B LTR ERVL 134 601 0 4 1075 192 268 0 0 chr5 64279609 64279650 -88257609 + MIRm SINE MIR 222 262 -14 4 1075 516 271 104 23 chr5 64279703 64279871 -88257388 - B3A SINE B2 -25 191 1 4 1075 2289 126 79 3 chr5 64281260 64281626 -88255633 - ORR1B1 LTR MaLR 0 394 1 4 1075 406 222 79 20 chr5 64282444 64282545 -88254714 + PB1D10 SINE Alu 11 117 0 4 1075 285 333 35 35 chr5 64282545 64282559 -88254700 + ID_B1 SINE B4 92 206 -18 4 1075 276 216 0 0 chr5 64282746 64282797 -88254462 - Lx8 LINE L1 -350 7123 7073 4 1075 421 299 83 30 chr5 64282858 64283124 -88254135 - L1MC4 LINE L1 -817 7225 6946 4 1075 585 76 0 0 chr5 64284828 64284907 -88252352 + (TG)n Simple_repeat Simple_repeat 1 79 0 4 1075 263 277 134 78 chr5 64285543 64285774 -88251485 - MLT1D LTR MaLR -260 245 2 4 1075 993 121 0 0 chr5 64285818 64286026 -88251233 + (CCAA)n Simple_repeat Simple_repeat 1 208 0 4 1075 186 133 0 0 chr5 64286102 64286132 -88251127 + (GGAA)n Simple_repeat Simple_repeat 2 31 0 4 1075 266 311 77 11 chr5 64286641 64286732 -88250527 - ORR1A4 LTR MaLR -11 368 272 4 1075 1918 101 12 92 chr5 64286951 64287278 -88249981 - ORR1A4 LTR MaLR -28 301 1 4 1075 4780 69 8 0 chr5 64287773 64288370 -88248889 + L1_Mus1 LINE L1 5966 6567 0 4 1075 860 177 55 11 chr5 64288671 64288854 -88248405 + L1_Mus1 LINE L1 6377 6567 0 4 1075 25 0 0 0 chr5 64288854 64288879 -88248380 + AT_rich Low_complexity Low_complexity 1 25 0 4 1075 225 312 30 70 chr5 64290164 64290264 -88246995 - MamRep1894 DNA hAT -9 114 19 4 1075 417 103 0 0 chr5 64291546 64291614 -88245645 + (TC)n Simple_repeat Simple_repeat 2 69 0 4 1075 184 0 97 0 chr5 64292018 64292049 -88245210 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1075 396 0 0 0 chr5 64292051 64292095 -88245164 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1075 578 230 93 54 chr5 64292096 64292225 -88245034 - RSINE1 SINE B4 -29 136 3 4 1075 189 107 0 0 chr5 64292238 64292266 -88244993 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 4 1075 26 50 0 0 chr5 64292706 64292746 -88244513 + AT_rich Low_complexity Low_complexity 1 40 0 4 1075 405 102 0 0 chr5 64292756 64292815 -88244444 + (TA)n Simple_repeat Simple_repeat 1 59 0 4 1075 838 137 27 14 chr5 64292857 64293005 -88244254 - B1_Mur4 SINE Alu 0 150 1 4 1075 734 291 133 17 chr5 64293005 64293299 -88243960 - Lx8 LINE L1 -26 7447 7120 4 1075 288 0 0 0 chr5 64293328 64293360 -88243899 + (TC)n Simple_repeat Simple_repeat 2 33 0 4 1075 389 194 0 0 chr5 64293497 64293559 -88243700 - ID_B1 SINE B4 -7 217 156 4 1075 361 204 39 33 chr5 64293559 64293587 -88243672 - B1F SINE Alu -7 142 27 4 1075 531 0 0 0 chr5 64293676 64293735 -88243524 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 4 1075 441 0 0 0 chr5 64295052 64295101 -88242158 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1075 450 0 0 0 chr5 64295101 64295150 -88242109 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1075 351 291 24 114 chr5 64295372 64295539 -88241720 + B3A SINE B2 31 182 -16 4 1075 446 271 9 0 chr5 64295703 64295810 -88241449 + PB1D10 SINE Alu 1 108 -9 4 1075 247 250 0 0 chr5 64295813 64295869 -88241390 + GA-rich Low_complexity Low_complexity 3 58 0 4 1075 251 328 0 0 chr5 64295870 64295937 -88241322 + B4 SINE B4 5 71 -221 4 1075 292 309 10 41 chr5 64297002 64297100 -88240159 + MLT1A1 LTR MaLR 302 396 -12 4 1075 322 340 86 46 chr5 64297206 64297357 -88239902 + B4A SINE B4 136 292 0 4 1075 351 0 0 0 chr5 64297364 64297403 -88239856 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1075 186 246 55 55 chr5 64297460 64297533 -88239726 - MIRc SINE MIR -136 132 60 4 1075 573 229 42 74 chr5 64298435 64298559 -88238700 + L1MC4a LINE L1 6699 6823 -1059 4 1075 2450 140 103 19 chr5 64298559 64299046 -88238213 + RLTR11A LTR ERVK 1 528 0 5 1075 573 229 42 74 chr5 64299046 64299110 -88238149 + L1MC4a LINE L1 6824 6881 -1001 4 1075 422 269 101 39 chr5 64299281 64299459 -88237800 + MLT1C LTR MaLR 36 224 -243 5 1075 376 266 112 45 chr5 64299651 64299875 -88237384 + L1MC4a LINE L1 7194 7432 -450 4 1075 315 313 47 7 chr5 64300033 64300181 -88237078 + L1MC4a LINE L1 7707 7860 -22 4 1075 24 0 0 0 chr5 64300805 64300829 -88236430 + AT_rich Low_complexity Low_complexity 1 24 0 5 1075 253 207 48 124 chr5 64301473 64301578 -88235681 - ID_B1 SINE B4 -2 222 126 5 1075 759 121 16 8 chr5 64302646 64302771 -88234488 + URR1B DNA MER1_type 77 202 -23 5 1075 342 250 78 31 chr5 64303246 64303374 -88233885 + B1F1 SINE Alu 1 134 -15 5 1075 352 217 14 0 chr5 64303398 64303467 -88233792 + tRNA-Ala-GCY_ tRNA tRNA 1 70 -5 5 1075 233 289 29 126 chr5 64303400 64303503 -88233756 + BC1_Mm scRNA scRNA 7 99 -53 5 1075 889 212 60 5 chr5 64303582 64303781 -88233478 - B3 SINE B2 -2 214 5 5 1075 389 279 35 18 chr5 64304279 64304392 -88232867 + PB1D7 SINE Alu 5 119 -1 5 1075 530 285 81 32 chr5 64304944 64305129 -88232130 - RMER30 DNA MER1_type -1 201 8 5 1075 1669 158 138 28 chr5 64305215 64305569 -88231690 - Lx5 LINE L1 0 7050 6674 5 1075 466 274 26 0 chr5 64306342 64306459 -88230800 + PB1D7 SINE Alu 1 120 0 5 1075 326 231 241 0 chr5 64306736 64306844 -88230415 - B1_Mur2 SINE Alu -13 136 3 5 1075 209 33 33 0 chr5 64307731 64307761 -88229498 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1075 566 255 48 7 chr5 64307785 64307931 -88229328 - RSINE1 SINE B4 -13 152 1 5 1075 287 200 62 62 chr5 64308525 64308621 -88228638 + L2a LINE L2 3322 3417 -9 5 1075 399 41 0 0 chr5 64309001 64309050 -88228209 + (TCC)n Simple_repeat Simple_repeat 2 50 0 5 1075 804 120 0 0 chr5 64309211 64309361 -88227898 + (GA)n Simple_repeat Simple_repeat 2 151 0 5 1075 420 221 32 0 chr5 64309790 64309885 -88227374 - RMER1B Other Other -158 908 811 5 1075 457 177 168 0 chr5 64309859 64309972 -88227287 + RMER1B Other Other 906 1037 -29 5 1075 342 270 29 29 chr5 64310141 64310244 -88227015 + ID_B1 SINE B4 100 202 -22 5 1075 582 275 0 0 chr5 64310243 64310381 -88226878 + B1F1 SINE Alu 12 149 0 5 1075 425 66 16 0 chr5 64310391 64310452 -88226807 + (GGGGA)n Simple_repeat Simple_repeat 3 64 0 5 1075 346 249 152 6 chr5 64310745 64310923 -88226336 + L1M2 LINE L1 5022 5225 -918 5 1075 312 27 0 0 chr5 64311059 64311096 -88226163 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1075 820 169 6 6 chr5 64311097 64311276 -88225983 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 1075 871 348 48 18 chr5 64311859 64312193 -88225066 - MER2 DNA MER2_type 0 345 2 5 1075 230 265 0 56 chr5 64312214 64312229 -88225030 + polypurine Low_complexity Low_complexity 3 17 0 5 1075 338 39 0 38 chr5 64312229 64312282 -88224977 + (CAGAGA)n Simple_repeat Simple_repeat 4 54 0 5 1075 230 265 0 56 chr5 64312282 64312338 -88224921 + polypurine Low_complexity Low_complexity 18 69 0 5 1075 712 211 14 14 chr5 64312505 64312649 -88224610 - B1_Mur1 SINE Alu -5 144 1 5 1075 323 287 63 32 chr5 64313795 64313921 -88223338 + MER3 DNA MER1_type 20 149 -60 5 1075 446 285 27 14 chr5 64314345 64314491 -88222768 + B1F SINE Alu 1 148 -1 5 1075 273 29 0 0 chr5 64315455 64315489 -88221770 + (TTGTG)n Simple_repeat Simple_repeat 2 35 0 5 1075 275 258 156 0 chr5 64315489 64315578 -88221681 - PB1D10 SINE Alu -10 110 6 5 1075 306 373 40 0 chr5 64319277 64319427 -88217832 - MIR SINE MIR -93 169 14 5 1075 233 114 182 0 chr5 64320586 64320630 -88216629 - Helitron1Nb_Mam RC Helitron -173 943 892 5 1075 544 312 21 36 chr5 64321438 64321631 -88215628 + MER20 DNA MER1_type 27 216 -3 5 1075 221 159 0 0 chr5 64322068 64322112 -88215147 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1075 279 250 108 20 chr5 64322472 64322574 -88214685 - MER106B DNA MER1_type -54 1005 895 5 1075 210 279 130 14 chr5 64323317 64323386 -88213873 + ID2 SINE ID 2 78 -5 5 1075 278 232 59 72 chr5 64323480 64323632 -88213627 + MLT1A0 LTR MaLR 214 404 -4 5 1075 245 305 27 168 chr5 64324061 64324246 -88213013 + MER21B LTR ERV1 63 221 -642 5 1075 412 270 191 44 chr5 64324249 64324501 -88212758 + MER21B LTR ERV1 468 756 -107 5 1075 402 123 54 14 chr5 64324542 64324616 -88212643 + B3A SINE B2 2 78 -120 5 1075 491 262 26 52 chr5 64326003 64326156 -88211103 + MLT1A1 LTR MaLR 248 396 -12 5 1075 814 223 0 0 chr5 64326264 64326403 -88210856 + ID_B1 SINE B4 84 222 -2 5 1075 207 0 0 0 chr5 64326683 64326706 -88210553 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1075 514 242 38 0 chr5 64326725 64326857 -88210402 - B4A SINE B4 -8 284 148 5 1075 195 346 12 0 chr5 64329919 64330000 -88207259 - L2b LINE L2 0 3375 3294 5 1075 608 239 10 0 chr5 64330434 64330753 -88206506 + (TGGA)n Simple_repeat Simple_repeat 1 322 0 5 1075 200 261 0 0 chr5 64331767 64331813 -88205446 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1075 696 24 0 0 chr5 64332232 64332314 -88204945 + (TTCC)n Simple_repeat Simple_repeat 2 83 0 5 1075 264 284 48 65 chr5 64332673 64332797 -88204462 + MIR SINE MIR 21 142 -120 5 1075 259 214 86 0 chr5 64332823 64332893 -88204366 + B1F2 SINE Alu 5 80 -69 5 1075 1299 70 37 16 chr5 64333027 64333215 -88204044 + B2_Mm2 SINE B2 1 192 -3 5 1075 338 267 53 32 chr5 64333289 64333479 -88203780 + MLT1G1 LTR MaLR 218 468 -111 5 1075 409 97 0 10 chr5 64333725 64333800 -88203459 + B1_Mur4 SINE Alu 78 150 0 5 1075 625 311 101 6 chr5 64333814 64334131 -88203128 + L1MA7 LINE L1 5593 5939 -352 5 1075 472 239 92 50 chr5 64334134 64334275 -88202984 - Tigger7 DNA MER2_type -2 2489 2343 5 1075 689 211 105 6 chr5 64334348 64334519 -88202740 + ORR1C2 LTR MaLR 25 195 -164 5 1075 763 307 108 0 chr5 64334530 64334771 -88202488 - Tigger7 DNA MER2_type -2224 267 1 5 1075 627 14 0 0 chr5 64334961 64335033 -88202226 + (GGGA)n Simple_repeat Simple_repeat 1 72 0 5 1075 1178 75 0 0 chr5 64335144 64335291 -88201968 - B1_Mus2 SINE Alu 0 147 1 5 1075 814 186 14 7 chr5 64335367 64335513 -88201746 + B1_Mus2 SINE Alu 1 147 0 5 1075 249 307 21 54 chr5 64335771 64335864 -88201395 - MLT1A1 LTR MaLR -14 394 305 5 1075 568 111 0 20 chr5 64336412 64336513 -88200746 + (CATA)n Simple_repeat Simple_repeat 2 100 0 5 1075 263 274 104 46 chr5 64336686 64336891 -88200368 - MIR SINE MIR -2 266 44 5 1075 263 140 0 20 chr5 64337128 64337179 -88200080 + GA-rich Low_complexity Low_complexity 5 54 0 5 1075 228 67 0 0 chr5 64337187 64337217 -88200042 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 5 1075 1304 69 0 0 chr5 64337218 64337378 -88199881 - B2_Mm2 SINE B2 -34 161 2 5 1075 1080 58 0 0 chr5 64338290 64338429 -88198830 + B1_Mus1 SINE Alu 10 148 0 5 1075 2968 272 69 17 chr5 64338446 64339317 -88197942 - RCHARR1 DNA MER1_type -58 916 1 5 1075 192 40 0 0 chr5 64339764 64339789 -88197470 + (CCTA)n Simple_repeat Simple_repeat 4 28 0 5 1075 730 213 95 15 chr5 64341168 64341368 -88195891 + B3 SINE B2 1 216 0 5 1075 210 37 0 0 chr5 64341611 64341638 -88195621 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1075 826 264 77 26 chr5 64343399 64343553 -88193706 - B4A SINE B4 -5 287 121 5 1075 237 33 0 0 chr5 64343553 64343583 -88193676 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1075 826 264 77 26 chr5 64343583 64343700 -88193559 - B4A SINE B4 -172 120 3 5 1075 222 152 22 0 chr5 64343723 64343769 -88193490 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1075 225 293 2 16 chr5 64344069 64344159 -88193100 + MIR SINE MIR 80 175 -101 5 1075 341 255 53 0 chr5 64345366 64345460 -88191799 + PB1D10 SINE Alu 13 111 -6 5 1075 319 227 250 52 chr5 64345564 64345680 -88191579 - MIR SINE MIR -64 198 60 5 1075 37 0 0 0 chr5 64345895 64345932 -88191327 + AT_rich Low_complexity Low_complexity 1 37 0 5 1075 600 299 211 17 chr5 64346617 64346705 -88190554 - MER21B LTR ERV1 -125 738 647 5 1075 965 90 75 0 chr5 64346705 64346839 -88190420 + B1_Mus1 SINE Alu 4 147 -1 5 1075 600 299 211 17 chr5 64346839 64347168 -88190091 - MER21B LTR ERV1 -217 646 241 5 1075 277 256 21 85 chr5 64349337 64349431 -88187828 + RLTR25A LTR ERVK 485 572 -531 5 1075 811 21 0 0 chr5 64349384 64349480 -88187779 + B1_Mus2 SINE Alu 52 147 0 5 1075 293 250 23 45 chr5 64349555 64349584 -88187675 - B1F2 SINE Alu -5 144 118 5 1075 384 104 0 0 chr5 64349584 64349651 -88187608 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1075 293 250 23 45 chr5 64349651 64349709 -88187550 - B1F2 SINE Alu -32 117 59 5 1075 467 275 13 127 chr5 64349783 64349845 -88187414 + B1F1 SINE Alu 11 63 -86 5 1075 713 267 67 0 chr5 64349845 64350040 -88187219 - B3 SINE B2 -6 210 3 5 1075 467 275 13 127 chr5 64350040 64350127 -88187132 + B1F1 SINE Alu 64 143 -6 5 1075 314 314 81 54 chr5 64350816 64350964 -88186295 + MER5A DNA MER1_type 38 189 0 5 1075 292 229 11 67 chr5 64351841 64351930 -88185329 + MLT1A LTR MaLR 38 121 -253 5 1075 509 178 11 0 chr5 64352542 64352632 -88184627 + B3A SINE B2 51 141 -57 5 1075 456 51 0 0 chr5 64352634 64352693 -88184566 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1075 240 307 12 62 chr5 64352840 64352920 -88184339 + MIR3 SINE MIR 96 171 -37 5 1075 452 254 49 33 chr5 64353596 64353718 -88183541 - B1F SINE Alu 0 149 26 5 1075 275 326 53 40 chr5 64353800 64353950 -88183309 - MIRb SINE MIR 0 268 117 5 1075 761 229 87 36 chr5 64354587 64354782 -88182477 - B3 SINE B2 -3 213 9 5 1075 198 71 0 0 chr5 64355110 64355138 -88182121 + (TC)n Simple_repeat Simple_repeat 2 29 0 5 1075 783 186 0 0 chr5 64355137 64355293 -88181966 + (TA)n Simple_repeat Simple_repeat 1 156 0 5 1075 233 191 0 0 chr5 64355293 64355335 -88181924 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 134 536 239 0 1 chr5 64356335 64356443 -88180816 - B1_Mur3 SINE Alu -41 108 2 6 1076 346 279 41 41 chr5 64356357 64356454 -88180805 - B4A SINE B4 -116 176 80 6 1076 246 32 0 0 chr5 64356733 64356764 -88180495 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 6 1076 29 28 0 0 chr5 64357020 64357056 -88180203 + AT_rich Low_complexity Low_complexity 1 36 0 6 1076 1105 89 0 0 chr5 64357632 64357778 -88179481 + B1_Mus1 SINE Alu 3 148 0 6 1076 241 220 0 0 chr5 64358012 64358062 -88179197 + C-rich Low_complexity Low_complexity 1 50 0 6 1076 24 32 0 0 chr5 64360626 64360657 -88176602 + AT_rich Low_complexity Low_complexity 1 31 0 6 1076 242 296 62 0 chr5 64360809 64360890 -88176369 - MIRb SINE MIR -80 188 103 6 1076 1987 151 109 39 chr5 64361380 64361393 -88175866 + MTC LTR MaLR 1 13 -408 6 1076 219 36 0 0 chr5 64361393 64361421 -88175838 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1076 1987 151 109 39 chr5 64361421 64361738 -88175521 + MTC LTR MaLR 14 364 -57 6 1076 1746 166 102 3 chr5 64361738 64362082 -88175177 + ORR1C1 LTR MaLR 1 378 0 6 1076 1987 168 88 65 chr5 64362082 64362149 -88175110 + MTC LTR MaLR 326 409 -12 6 1076 268 229 78 119 chr5 64362701 64362894 -88174365 + L1MA4A LINE L1 5818 6002 -301 6 1076 1421 69 21 0 chr5 64363200 64363388 -88173871 - B2_Mm2 SINE B2 -3 192 1 6 1076 310 255 70 60 chr5 64363687 64363733 -88173526 + L1MEg LINE L1 1838 1887 -4197 6 1076 1183 74 0 0 chr5 64363733 64363881 -88173378 + B1_Mus1 SINE Alu 1 148 0 6 1076 310 255 70 60 chr5 64363881 64363934 -88173325 + L1MEg LINE L1 1888 1938 -4146 6 1076 533 270 44 78 chr5 64363973 64363993 -88173266 - B3A SINE B2 0 198 182 6 1076 492 59 0 0 chr5 64363993 64364061 -88173198 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1076 533 270 44 78 chr5 64364061 64364245 -88173014 - B3A SINE B2 -17 181 1 6 1076 514 80 17 130 chr5 64364408 64364523 -88172736 + L1Md_F2 LINE L1 6481 6582 0 6 1076 303 246 86 86 chr5 64365281 64365432 -88171827 + RMER15 LTR ERVL 403 553 -22 6 1076 2146 135 49 23 chr5 64365465 64365851 -88171408 - MTC LTR MaLR -19 402 7 6 1076 205 138 0 0 chr5 64366225 64366254 -88171005 + (GAA)n Simple_repeat Simple_repeat 2 30 0 6 1076 398 88 0 14 chr5 64366585 64366654 -88170605 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 1076 2717 147 24 34 chr5 64367035 64367501 -88169758 + RMER6B LTR ERVK 1 461 0 6 1076 713 192 249 6 chr5 64368367 64368540 -88168719 - B3 SINE B2 0 216 2 6 1076 207 0 0 0 chr5 64368566 64368589 -88168670 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1076 3408 60 0 18 chr5 64368597 64369040 -88168219 - L1_Mus1 LINE L1 -1 6566 6132 6 1076 1828 118 108 36 chr5 64369063 64369398 -88167861 + ORR1B2 LTR MaLR 1 359 -8 6 1076 585 144 28 37 chr5 64369437 64369545 -88167714 + B1_Mur4 SINE Alu 42 148 -2 6 1076 266 279 76 23 chr5 64369788 64369920 -88167339 + LTR16A LTR ERVL 227 365 -86 6 1076 522 0 0 0 chr5 64369980 64370038 -88167221 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 1076 1162 323 72 8 chr5 64370511 64370986 -88166273 + MLT1D LTR MaLR 1 505 0 6 1076 1062 182 23 46 chr5 64372013 64372232 -88165027 - ID_B1 SINE B4 -6 218 5 6 1076 427 289 86 20 chr5 64372765 64372917 -88164342 + MER3 DNA MER1_type 47 208 -1 6 1076 696 173 7 57 chr5 64373224 64373365 -88163894 - B1_Mur3 SINE Alu -13 136 3 6 1076 1254 283 96 22 chr5 64373734 64374303 -88162956 - MLT1C-int LTR MaLR -630 741 10 6 1076 1007 229 80 20 chr5 64374306 64374659 -88162600 - MLT1C LTR MaLR 0 467 2 6 1076 591 0 38 0 chr5 64374659 64374738 -88162521 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 6 1076 299 226 7 50 chr5 64374944 64375050 -88162209 - L1M5 LINE L1 -806 5434 5326 6 1076 976 40 8 0 chr5 64375052 64375178 -88162081 - B1_Mus1 SINE Alu -21 127 1 6 1076 259 238 84 56 chr5 64375481 64375588 -88161671 - L1M5 LINE L1 -1441 4705 4596 6 1076 22 35 0 0 chr5 64375588 64375617 -88161642 + AT_rich Low_complexity Low_complexity 1 29 0 6 1076 1282 20 0 0 chr5 64375622 64375769 -88161490 - B1_Mus2 SINE Alu 0 147 1 6 1076 4045 168 75 91 chr5 64375769 64376667 -88160592 - RMER19B LTR ERVK -17 885 1 6 1076 460 302 30 55 chr5 64376937 64377137 -88160122 + B3A SINE B2 3 197 -1 6 1076 327 188 0 99 chr5 64377229 64377244 -88160015 + B1_Mm SINE Alu 77 90 -57 6 1076 416 240 19 28 chr5 64377244 64377351 -88159908 + PB1D10 SINE Alu 5 110 -7 6 1076 327 188 0 99 chr5 64377351 64377406 -88159853 + B1_Mm SINE Alu 91 140 -7 6 1076 207 254 50 17 chr5 64377821 64377881 -88159378 - MIRc SINE MIR -61 207 146 6 1076 400 302 87 0 chr5 64378708 64378834 -88158425 + MLT1G1 LTR MaLR 139 275 -304 6 1076 731 304 77 73 chr5 64378847 64378919 -88158340 + B4 SINE B4 3 75 -217 6 1076 207 0 0 0 chr5 64378919 64378942 -88158317 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 6 1076 731 304 77 73 chr5 64378942 64379156 -88158103 + B4 SINE B4 76 290 -2 6 1076 359 21 21 0 chr5 64379188 64379236 -88158023 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1076 439 274 162 26 chr5 64379565 64379831 -88157428 + L1M5 LINE L1 5396 5697 -467 6 1076 1269 181 92 8 chr5 64379836 64380086 -88157173 - MTD LTR MaLR 0 419 149 6 1076 266 113 211 0 chr5 64380087 64380158 -88157101 + MTEb LTR MaLR 294 379 0 6 1076 405 0 0 0 chr5 64380225 64380270 -88156989 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 6 1076 843 235 18 12 chr5 64380270 64380438 -88156821 - B3 SINE B2 -4 212 44 6 1076 387 127 0 0 chr5 64380451 64380514 -88156745 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1076 377 341 0 8 chr5 64380880 64381004 -88156255 + B4A SINE B4 152 274 -18 6 1076 447 130 0 0 chr5 64381022 64381099 -88156160 + (CATA)n Simple_repeat Simple_repeat 2 78 0 6 1076 788 186 0 6 chr5 64381109 64381282 -88155977 + (CA)n Simple_repeat Simple_repeat 1 172 0 6 1076 181 345 53 121 chr5 64382123 64382255 -88155004 + L2c LINE L2 3056 3178 -209 6 1076 3407 47 2 2 chr5 64382359 64382766 -88154493 - MTB_Mm LTR MaLR 0 407 1 6 1076 321 314 141 0 chr5 64383319 64383440 -88153819 + B1F1 SINE Alu 12 149 0 6 1076 826 170 7 0 chr5 64385660 64385801 -88151458 + B1_Mur4 SINE Alu 1 142 -8 6 1076 369 62 0 0 chr5 64386027 64386075 -88151184 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1076 250 323 42 0 chr5 64386246 64386342 -88150917 + MIR SINE MIR 97 196 -66 6 1076 459 0 0 0 chr5 64386382 64386433 -88150826 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1076 221 273 0 0 chr5 64386433 64386477 -88150782 + ID4 SINE ID 11 54 -29 6 1076 241 358 97 0 chr5 64386822 64386987 -88150272 + MIR SINE MIR 61 241 -21 6 1076 615 14 0 0 chr5 64387031 64387103 -88150156 + (TG)n Simple_repeat Simple_repeat 1 72 0 6 1076 221 317 33 0 chr5 64387106 64387166 -88150093 - B2_Mm2 SINE B2 -120 75 14 6 1076 188 315 96 21 chr5 64387372 64387466 -88149793 - L2 LINE L2 -505 2914 2814 6 1076 390 189 26 259 chr5 64388116 64388140 -88149119 + ORR1A3-int LTR MaLR 588 735 -1228 6 1076 1291 71 12 0 chr5 64388140 64388309 -88148950 + MT2B2 LTR ERVL 1 171 -413 6 1076 1674 79 104 0 chr5 64388306 64388547 -88148712 + MT2B2 LTR ERVL 319 584 0 6 1076 947 246 19 5 chr5 64388687 64388899 -88148360 + B3 SINE B2 1 215 -1 6 1076 459 0 0 0 chr5 64388966 64389017 -88148242 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 6 1076 399 234 87 35 chr5 64389242 64389357 -88147902 + B1F1 SINE Alu 29 149 0 6 1076 659 293 94 116 chr5 64389406 64389607 -88147652 + L1MC3 LINE L1 6007 6151 -1634 6 1076 416 338 6 24 chr5 64389607 64389771 -88147488 - RSINE1 SINE B4 -3 162 2 6 1076 659 293 94 116 chr5 64389771 64390145 -88147114 + L1MC3 LINE L1 6152 6569 -1216 6 1076 268 307 221 30 chr5 64390156 64390391 -88146868 - MLT1A0 LTR MaLR 0 365 86 6 1076 638 271 112 45 chr5 64390485 64390841 -88146418 + L1MC3 LINE L1 6633 7012 -773 6 1076 691 260 84 44 chr5 64390938 64391236 -88146023 + L1MC3 LINE L1 7460 7769 -16 6 1076 1330 115 11 0 chr5 64391753 64391944 -88145315 + B2_Mm1t SINE B2 1 193 0 6 1076 374 0 0 21 chr5 64391993 64392040 -88145219 + (TAA)n Simple_repeat Simple_repeat 2 47 0 6 1076 3222 225 76 127 chr5 64392191 64393249 -88144010 - RMER1B Other Other -13 1053 50 6 1076 851 219 48 5 chr5 64393856 64394044 -88143215 - B3 SINE B2 0 216 21 6 1076 324 195 13 8 chr5 64394322 64394405 -88142854 + PB1D10 SINE Alu 34 117 -3 6 1076 588 285 221 11 chr5 64395102 64395365 -88141894 + MLT1G LTR MaLR 208 525 -66 6 1076 239 359 0 0 chr5 64395732 64395810 -88141449 + MLT1A LTR MaLR 65 142 -232 6 1076 471 234 152 7 chr5 64396426 64396564 -88140695 + RSINE1 SINE B4 4 161 -4 6 1076 357 319 40 74 chr5 64397026 64397175 -88140084 + B4 SINE B4 80 223 -69 6 1076 681 209 22 22 chr5 64397042 64397179 -88140080 + B1_Mur1 SINE Alu 11 147 -2 6 1076 229 205 0 0 chr5 64397399 64397438 -88139821 - ID4_ SINE ID -27 56 18 6 1076 678 316 100 22 chr5 64397651 64397971 -88139288 + MLT1A LTR MaLR 15 359 -15 6 1076 327 218 140 56 chr5 64398628 64398735 -88138524 + PB1D10 SINE Alu 2 117 0 6 1076 191 146 24 0 chr5 64398902 64398943 -88138316 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1076 635 179 18 0 chr5 64399782 64399894 -88137365 + MTC LTR MaLR 1 114 -305 6 1076 648 0 0 0 chr5 64399895 64399967 -88137292 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 6 1076 230 176 20 0 chr5 64400124 64400175 -88137084 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 6 1076 1221 116 17 0 chr5 64400175 64400347 -88136912 - B2_Mm2 SINE B2 -18 177 3 6 1076 1158 141 10 25 chr5 64400355 64400552 -88136707 - B2_Mm2 SINE B2 -1 194 1 6 1076 1044 207 212 12 chr5 64400554 64400813 -88136446 + MTC LTR MaLR 111 421 0 6 1076 242 347 54 20 chr5 64401048 64401195 -88136064 + MIRb SINE MIR 73 224 -44 6 1076 252 290 87 39 chr5 64401364 64401468 -88135791 - L2a LINE L2 -9 3417 3309 6 1076 289 280 48 63 chr5 64401557 64401683 -88135576 + ORR1E LTR MaLR 5 128 -231 7 1076 270 73 0 0 chr5 64401727 64401768 -88135491 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 7 1076 261 226 0 19 chr5 64401769 64401823 -88135436 + CT-rich Low_complexity Low_complexity 4 56 0 7 1076 316 302 0 0 chr5 64401927 64401990 -88135269 + ID4_ SINE ID 12 74 -9 7 1076 368 318 140 10 chr5 64402251 64402451 -88134808 - L2a LINE L2 -1524 1895 1670 6 1076 408 309 90 110 chr5 64402472 64402817 -88134442 - ORR1E LTR MaLR 0 359 22 7 1076 249 310 52 87 chr5 64402852 64403025 -88134234 + RMER12 LTR ERVK 708 874 -448 7 1076 663 303 0 70 chr5 64403013 64403085 -88134174 - B4 SINE B4 0 292 225 7 1076 324 0 0 0 chr5 64403085 64403121 -88134138 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1076 663 303 0 70 chr5 64403121 64403261 -88133998 - B4 SINE B4 -68 224 95 7 1076 207 269 14 95 chr5 64403291 64403365 -88133894 - L2a LINE L2 -1882 1537 1470 6 1076 304 253 12 25 chr5 64403491 64403572 -88133687 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1076 234 368 23 31 chr5 64404342 64404471 -88132788 + MLT1J LTR MaLR 15 142 -370 7 1076 1960 99 31 22 chr5 64404479 64404798 -88132461 + RLTRETN_Mm LTR ERVK 1 322 0 7 1076 14807 20 1 19 chr5 64404798 64405886 -88131373 + ETnERV2-int LTR ERVK 1 1087 -2227 7 1076 1312 20 0 0 chr5 64405886 64406033 -88131226 + B1_Mm SINE Alu 1 147 0 7 1076 17755 165 42 31 chr5 64406033 64408464 -88128795 + ETnERV2-int LTR ERVK 1088 3659 -3747 7 1076 184 209 47 0 chr5 64408464 64408507 -88128752 - L4 LINE RTE -1231 798 754 7 1076 17755 165 42 31 chr5 64408507 64411780 -88125479 + ETnERV2-int LTR ERVK 3660 7124 -282 7 1076 1959 99 31 22 chr5 64411780 64412099 -88125160 + RLTRETN_Mm LTR ERVK 1 322 0 7 1076 775 263 35 55 chr5 64412161 64412304 -88124955 - B3A SINE B2 -1 197 53 7 1076 2466 104 0 0 chr5 64412304 64412631 -88124628 - ORR1A2 LTR MaLR 0 327 1 7 1076 775 263 35 55 chr5 64412631 64412688 -88124571 - B3A SINE B2 -146 52 1 7 1076 180 311 222 0 chr5 64413244 64413334 -88123925 - MER5A DNA MER1_type -22 167 58 7 1076 698 299 41 68 chr5 64414765 64415059 -88122200 + MER58B DNA MER1_type 56 341 0 7 1076 691 247 41 24 chr5 64415111 64415332 -88121927 - MTD LTR MaLR 0 419 181 7 1076 200 176 43 14 chr5 64415339 64415408 -88121851 + (TA)n Simple_repeat Simple_repeat 1 71 0 7 1076 231 36 0 0 chr5 64415431 64415459 -88121800 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1076 234 281 0 0 chr5 64415459 64415516 -88121743 - MTD LTR MaLR -353 68 12 7 1076 238 191 0 0 chr5 64416217 64416259 -88121000 - L1M5 LINE L1 -356 5768 5727 7 1076 609 246 120 0 chr5 64417772 64417914 -88119345 + ORR1C1 LTR MaLR 32 190 -188 7 1076 207 179 0 0 chr5 64417929 64417968 -88119291 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1076 237 300 28 46 chr5 64417974 64418257 -88119002 + RMER17D2 LTR ERVK 278 555 -254 7 1076 874 195 70 65 chr5 64418159 64418373 -88118886 + ORR1C1 LTR MaLR 164 378 0 7 1076 1436 265 69 0 chr5 64419826 64420173 -88117086 - MTEa LTR MaLR -7 372 2 7 1076 337 234 26 13 chr5 64420203 64420281 -88116978 + ID4 SINE ID 3 81 -2 7 1076 463 318 98 24 chr5 64420378 64420691 -88116568 + MLT1D LTR MaLR 131 503 -2 7 1076 248 238 59 12 chr5 64420723 64420808 -88116451 - MER5B DNA MER1_type -67 111 23 7 1076 292 377 37 12 chr5 64420918 64421079 -88116180 - MER5B DNA MER1_type -13 165 1 7 1076 346 298 34 34 chr5 64421542 64421688 -88115571 - RSINE1 SINE B4 -17 148 3 7 1076 2385 140 46 52 chr5 64422072 64422548 -88114711 + IAPLTR2_Mm LTR ERVK 1 473 -2 7 1076 58299 16 5 10 chr5 64422548 64429060 -88108199 + IAPEz-int LTR ERVK 3 6481 0 7 1076 2385 140 46 52 chr5 64429060 64429536 -88107723 + IAPLTR2_Mm LTR ERVK 1 473 -2 7 1076 1048 282 121 3 chr5 64429592 64429930 -88107329 + MTEa LTR MaLR 1 378 -1 7 1076 369 214 38 3 chr5 64430399 64430487 -88106772 + MTEb LTR MaLR 273 379 0 7 1076 300 346 122 9 chr5 64430813 64431026 -88106233 - MARNA DNA Mariner -167 419 183 7 1076 190 350 89 10 chr5 64431153 64431254 -88106005 + MIR SINE MIR 118 226 -36 7 1076 326 391 33 27 chr5 64431372 64431556 -88105703 - MLT1K LTR MaLR -16 579 395 7 1076 461 316 62 16 chr5 64431930 64432123 -88105136 - MIRb SINE MIR -54 214 13 7 1076 227 358 16 39 chr5 64432096 64432224 -88105035 - MIR SINE MIR -51 211 87 7 1076 207 358 114 0 chr5 64432277 64432400 -88104859 + MER91A DNA Tip100 2 138 -58 7 1076 21 0 0 0 chr5 64433016 64433037 -88104222 + AT_rich Low_complexity Low_complexity 1 21 0 7 1076 289 279 0 45 chr5 64433634 64433743 -88103516 + MLT1J LTR MaLR 29 165 -347 7 1076 200 194 0 0 chr5 64433943 64433979 -88103280 + GA-rich Low_complexity Low_complexity 1 36 0 7 1076 1404 71 11 0 chr5 64434019 64434201 -88103058 - B2_Mm1t SINE B2 -8 185 2 7 1076 234 62 0 0 chr5 64435317 64435349 -88101910 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1076 276 100 0 0 chr5 64436862 64436902 -88100357 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1076 1611 131 40 36 chr5 64437581 64437859 -88099400 + RLTR20B2 LTR ERVK 2 280 -280 7 1076 344 318 53 13 chr5 64437871 64438021 -88099238 + MLT1D LTR MaLR 290 445 -60 7 1076 23 0 0 0 chr5 64438876 64438899 -88098360 + AT_rich Low_complexity Low_complexity 1 23 0 7 1076 195 346 65 28 chr5 64440270 64440377 -88096882 - MIRm SINE MIR -3 273 163 7 1076 387 0 0 0 chr5 64440628 64440671 -88096588 + (A)n Simple_repeat Simple_repeat 1 43 0 7 1076 395 217 67 117 chr5 64440699 64440819 -88096440 + B1F SINE Alu 28 142 -7 7 1076 413 231 67 9 chr5 64440946 64441051 -88096208 + MER74A LTR ERVL 15 125 -433 7 1076 232 276 106 71 chr5 64441178 64441291 -88095968 + MER74A LTR ERVL 388 504 -54 7 1076 7160 40 33 5 chr5 64442015 64442891 -88094368 + L1Md_F2 LINE L1 5679 6579 -3 7 1076 3994 116 127 10 chr5 64443101 64443519 -88093740 - RMER6A LTR ERVK 0 756 324 7 1076 495 0 0 0 chr5 64443519 64443574 -88093685 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 1076 3994 116 127 10 chr5 64443574 64443832 -88093427 - RMER6A LTR ERVK -433 323 3 7 1076 1974 105 129 30 chr5 64444030 64444364 -88092895 + ORR1B2 LTR MaLR 1 367 0 7 1076 1247 165 4 22 chr5 64445518 64445747 -88091512 + URR1B DNA MER1_type 1 225 0 7 1076 333 295 191 20 chr5 64446472 64446718 -88090541 + MLT2B1 LTR ERVL 25 312 -208 7 1076 977 162 65 15 chr5 64446718 64446901 -88090358 + ORR1D1 LTR MaLR 1 193 -181 7 1076 1809 137 33 21 chr5 64446901 64447176 -88090083 - RMER6A LTR ERVK 0 756 477 7 1076 1998 104 12 51 chr5 64447176 64447511 -88089748 + RLTRETN_Mm LTR ERVK 1 322 0 7 1076 1809 137 33 21 chr5 64447511 64447571 -88089688 - RMER6A LTR ERVK -280 476 417 7 1076 418 113 0 0 chr5 64447565 64447627 -88089632 - RMER6A LTR ERVK -636 120 59 7 1076 1010 183 5 11 chr5 64447644 64447832 -88089427 + ORR1D1 LTR MaLR 188 374 0 7 1076 226 178 0 0 chr5 64448689 64448734 -88088525 + tRNA-Ala-GCY_ tRNA tRNA 2 46 -29 7 1076 1112 191 5 5 chr5 64449024 64449224 -88088035 - B3 SINE B2 -7 209 10 7 1076 203 159 0 43 chr5 64449276 64449287 -88087972 + A-rich Low_complexity Low_complexity 1 10 0 7 1076 1123 64 50 0 chr5 64449287 64449427 -88087832 + B1_Mus2 SINE Alu 1 147 0 7 1076 203 159 0 43 chr5 64449427 64449461 -88087798 + A-rich Low_complexity Low_complexity 11 44 0 7 1076 193 159 15 73 chr5 64450494 64450562 -88086697 + CT-rich Low_complexity Low_complexity 3 66 0 7 1076 399 41 0 0 chr5 64450594 64450643 -88086616 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1076 321 47 0 0 chr5 64450775 64450818 -88086441 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 7 1076 851 211 76 20 chr5 64450930 64451128 -88086131 - ORR1D1 LTR MaLR 0 374 166 7 1076 684 159 17 23 chr5 64451133 64451307 -88085952 + GA-rich Low_complexity Low_complexity 5 177 0 7 1076 911 171 12 17 chr5 64451308 64451481 -88085778 - ORR1D1 LTR MaLR -191 183 12 7 1076 289 206 31 31 chr5 64451650 64451715 -88085544 - ID4_ SINE ID -17 66 2 7 1076 329 261 103 9 chr5 64451723 64451839 -88085420 - B1F SINE Alu -1 148 22 7 1076 300 197 0 0 chr5 64453033 64453094 -88084165 - LTR85a LTR Gypsy? -620 82 22 7 1076 23 0 0 0 chr5 64453470 64453493 -88083766 + AT_rich Low_complexity Low_complexity 1 23 0 7 1076 1227 14 0 0 chr5 64454037 64454178 -88083081 + (GAAAA)n Simple_repeat Simple_repeat 2 142 0 7 1076 198 163 93 0 chr5 64455707 64455750 -88081509 - MIRc SINE MIR -136 132 86 7 1076 403 289 14 29 chr5 64455962 64456101 -88081158 + GA-rich Low_complexity Low_complexity 2 138 0 7 1076 3780 134 101 13 chr5 64456472 64457167 -88080092 - RMER6A LTR ERVK 0 756 1 7 1076 270 0 0 0 chr5 64459264 64459294 -88077965 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1076 465 180 0 0 chr5 64459294 64459383 -88077876 + (TA)n Simple_repeat Simple_repeat 2 90 0 7 1076 640 241 105 0 chr5 64459534 64459696 -88077563 + B3A SINE B2 2 180 -18 7 1076 773 232 15 40 chr5 64459777 64459979 -88077280 - B3 SINE B2 -15 201 5 7 1076 338 129 70 14 chr5 64460032 64460103 -88077156 + B1F SINE Alu 24 98 -51 7 1076 323 171 29 0 chr5 64460106 64460176 -88077083 + G-rich Low_complexity Low_complexity 3 74 0 7 1076 1219 69 17 0 chr5 64460179 64460353 -88076906 + (GGGAA)n Simple_repeat Simple_repeat 2 178 0 7 1076 861 190 128 21 chr5 64461813 64461888 -88075371 - Lx9 LINE L1 -16 7628 7551 7 1076 270 0 0 0 chr5 64461888 64461918 -88075341 + (TC)n Simple_repeat Simple_repeat 1 30 0 7 1076 861 190 128 21 chr5 64461918 64462084 -88075175 - Lx9 LINE L1 -94 7550 7361 7 1076 442 305 31 0 chr5 64462087 64462215 -88075044 - RSINE1 SINE B4 -29 136 5 7 1076 640 303 6 20 chr5 64462483 64462686 -88074573 + B3A SINE B2 3 206 -10 7 1076 399 279 0 0 chr5 64462767 64462853 -88074406 - B1F SINE Alu -49 100 15 7 1076 207 0 0 0 chr5 64463881 64463904 -88073355 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1076 1190 48 14 0 chr5 64463904 64464049 -88073210 - B1_Mur4 SINE Alu -3 147 1 7 1076 1567 211 92 32 chr5 64464730 64465197 -88072062 - RMER19C LTR ERVK 0 902 227 7 1076 1010 59 0 0 chr5 64465196 64465331 -88071928 - B1_Mus1 SINE Alu 0 148 14 7 1076 709 182 87 11 chr5 64465331 64465514 -88071745 - RMER19C LTR ERVK -414 197 1 7 1076 23 33 0 0 chr5 64465576 64465606 -88071653 + AT_rich Low_complexity Low_complexity 1 30 0 7 1076 888 249 14 32 chr5 64466144 64466364 -88070895 - B3 SINE B2 0 216 1 7 1076 315 0 0 0 chr5 64466382 64466417 -88070842 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1076 365 292 106 0 chr5 64466451 64466564 -88070695 - B3A SINE B2 -70 128 4 7 1076 252 0 0 0 chr5 64466709 64466737 -88070522 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7 1076 1215 57 0 0 chr5 64466737 64466894 -88070365 - B2_Mm1a SINE B2 -35 158 2 7 1076 3122 49 28 10 chr5 64467747 64468140 -88069119 + MTB LTR MaLR 1 400 0 8 1076 573 181 5 207 chr5 64468172 64468360 -88068899 - B1_Mur4 SINE Alu 0 150 1 8 1076 403 297 76 23 chr5 64468416 64468547 -88068712 - RSINE1 SINE B4 -25 140 3 8 1076 1146 69 0 0 chr5 64469423 64469568 -88067691 + B1_Mus2 SINE Alu 2 146 -1 8 1076 349 281 53 82 chr5 64469679 64469988 -88067271 + MTEa LTR MaLR 56 379 0 8 1076 665 244 102 24 chr5 64470016 64470222 -88067037 + ID_B1 SINE B4 1 222 -2 8 1076 628 177 0 14 chr5 64470231 64470374 -88066885 + GA-rich Low_complexity Low_complexity 4 144 0 8 1076 243 0 0 0 chr5 64470778 64470805 -88066454 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1076 2853 61 16 8 chr5 64471083 64471462 -88065797 + L1Md_F2 LINE L1 6200 6581 -1 8 1076 216 279 35 71 chr5 64471486 64471571 -88065688 - B1F SINE Alu 0 149 68 8 1076 244 51 49 33 chr5 64471573 64471634 -88065625 + (CCA)n Simple_repeat Simple_repeat 2 63 0 8 1076 599 338 34 0 chr5 64471637 64471841 -88065418 + MLT1A0 LTR MaLR 149 359 -6 8 1076 2868 150 149 30 chr5 64471976 64472513 -88064746 - MT2B LTR ERVL 0 601 1 8 1076 486 172 10 0 chr5 64472970 64473069 -88064190 + RMER5 LTR ERV1 2 101 -433 8 1076 1979 192 63 20 chr5 64473082 64473570 -88063689 - RLTR28 LTR ERVL -14 510 2 8 1076 1615 201 89 22 chr5 64473570 64473976 -88063283 + RMER5 LTR ERV1 102 534 0 8 1076 486 240 10 0 chr5 64474017 64474121 -88063138 + B1_Mur2 SINE Alu 34 138 -11 8 1076 435 202 0 92 chr5 64474179 64474277 -88062982 + ID_B1 SINE B4 103 191 -33 8 1076 461 227 92 8 chr5 64474296 64474416 -88062843 - B3A SINE B2 -66 132 3 8 1076 299 241 51 0 chr5 64475132 64475211 -88062048 - ID4 SINE ID 0 83 1 8 1076 24 67 0 0 chr5 64475748 64475793 -88061466 + AT_rich Low_complexity Low_complexity 1 45 0 8 1076 279 104 0 0 chr5 64475795 64475843 -88061416 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1076 560 289 25 31 chr5 64475846 64476007 -88061252 - B3A SINE B2 -38 160 1 8 1076 302 324 0 0 chr5 64476211 64476321 -88060938 + B1F SINE Alu 10 119 -1 8 1076 525 214 271 12 chr5 64476327 64476497 -88060762 + ID_B1 SINE B4 10 223 -1 8 1076 668 187 48 48 chr5 64476983 64477129 -88060130 - B1_Mus2 SINE Alu -1 146 1 8 1076 23 54 0 0 chr5 64477154 64477191 -88060068 + AT_rich Low_complexity Low_complexity 1 37 0 8 1076 1746 128 13 65 chr5 64477206 64477516 -88059743 - ORR1A3 LTR MaLR -2 324 31 8 1076 1279 245 54 0 chr5 64477727 64478041 -88059218 + ERVL-B4-int LTR ERVL 5125 5455 -259 8 1076 1248 205 115 9 chr5 64478253 64478583 -88058676 - ORR1D2 LTR MaLR -3 367 3 8 1076 429 319 143 25 chr5 64479236 64479557 -88057702 + LTR84b LTR ERVL 47 405 -356 8 1076 2414 182 2 5 chr5 64479650 64480070 -88057189 - MTC LTR MaLR 0 421 3 8 1076 1097 69 96 23 chr5 64480805 64480952 -88056307 + B2_Mm2 SINE B2 2 153 -42 8 1076 311 60 0 20 chr5 64480952 64481003 -88056256 + (CATA)n Simple_repeat Simple_repeat 4 53 0 8 1076 1097 69 96 23 chr5 64481003 64481032 -88056227 + B2_Mm2 SINE B2 154 190 -5 8 1076 484 239 53 0 chr5 64481071 64481184 -88056075 + ID_B1 SINE B4 88 206 -18 8 1076 414 0 0 0 chr5 64481233 64481279 -88055980 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1076 377 293 27 48 chr5 64481314 64481461 -88055798 + B1F SINE Alu 1 144 -5 8 1076 230 211 175 0 chr5 64481489 64481546 -88055713 + ID4 SINE ID 1 67 -16 8 1076 636 263 0 50 chr5 64481670 64481701 -88055558 + RSINE1 SINE B4 3 29 -136 8 1076 4372 131 48 32 chr5 64481701 64482445 -88054814 - RMER6A LTR ERVK 0 756 1 8 1076 636 263 0 50 chr5 64482445 64482553 -88054706 + RSINE1 SINE B4 30 135 -30 8 1076 369 0 0 0 chr5 64482559 64482600 -88054659 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1076 266 216 48 146 chr5 64482838 64483058 -88054201 - L1M5 LINE L1 -282 5891 5692 8 1076 276 77 0 0 chr5 64483065 64483104 -88054155 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1076 767 258 18 0 chr5 64483105 64483272 -88053987 - B3 SINE B2 -27 189 20 8 1076 204 40 0 0 chr5 64483314 64483339 -88053920 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 8 1076 300 208 52 0 chr5 64483339 64483416 -88053843 - B1F SINE Alu -12 137 57 8 1076 584 242 68 0 chr5 64483777 64483909 -88053350 - B1_Mur1 SINE Alu -8 141 1 8 1076 378 281 83 30 chr5 64485099 64485268 -88051991 + MER45A DNA Tip100 1 178 0 8 1076 209 272 25 0 chr5 64486092 64486173 -88051086 + (TG)n Simple_repeat Simple_repeat 1 83 0 8 1076 1819 111 38 35 chr5 64486213 64486530 -88050729 - ORR1A4 LTR MaLR 0 329 12 8 1076 230 354 30 23 chr5 64486597 64486730 -88050529 - B4 SINE B4 -158 134 1 8 1077 192 281 15 30 chr5 64487793 64487859 -88049400 - MIRc SINE MIR -85 183 119 8 1077 441 0 0 0 chr5 64488088 64488137 -88049122 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1077 209 227 52 0 chr5 64488578 64488650 -88048609 - L2a LINE L2 -7 3419 3305 8 1077 1560 48 16 0 chr5 64489068 64489254 -88048005 - B2_Mm2 SINE B2 -5 190 2 8 1077 801 261 6 11 chr5 64489892 64490074 -88047185 + B3A SINE B2 1 181 -17 8 1077 561 234 171 14 chr5 64490120 64490295 -88046964 + B3A SINE B2 1 189 -27 8 1077 198 0 0 0 chr5 64490348 64490370 -88046889 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1077 1093 241 22 55 chr5 64491305 64491577 -88045682 - B4 SINE B4 -11 281 19 8 1077 244 322 128 20 chr5 64491598 64491747 -88045512 - MIR SINE MIR -67 195 31 8 1077 270 207 0 0 chr5 64491749 64491807 -88045452 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 8 1077 234 0 0 0 chr5 64491807 64491833 -88045426 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1077 541 227 247 51 chr5 64492434 64492592 -88044667 - B3A SINE B2 -9 189 1 8 1077 641 95 0 0 chr5 64492667 64492762 -88044497 + B1_Mur3 SINE Alu 27 121 -28 8 1077 239 318 95 25 chr5 64492775 64492933 -88044326 + B4 SINE B4 55 223 -69 8 1077 456 175 128 26 chr5 64492822 64492939 -88044320 + B1_Mur3 SINE Alu 21 149 0 8 1077 292 314 38 9 chr5 64493346 64493452 -88043807 - PB1D10 SINE Alu -8 109 1 8 1077 268 239 14 0 chr5 64493944 64494015 -88043244 + ID SINE ID 1 72 -152 8 1077 349 274 19 0 chr5 64494282 64494388 -88042871 - Tigger7 DNA MER2_type -123 2368 2261 8 1077 234 242 24 97 chr5 64494703 64494868 -88042391 + C-rich Low_complexity Low_complexity 3 155 0 8 1077 441 0 0 0 chr5 64495474 64495523 -88041736 + (TA)n Simple_repeat Simple_repeat 1 49 0 8 1077 321 244 0 25 chr5 64495598 64495678 -88041581 + RSINE1 SINE B4 1 78 -87 8 1077 413 15 292 0 chr5 64496431 64496496 -88040763 - B1_Mus2 SINE Alu -4 143 60 8 1077 1055 122 0 0 chr5 64498638 64498785 -88038474 - B1_Mur4 SINE Alu 0 150 4 8 1077 879 206 66 9 chr5 64499161 64499372 -88037887 - ID_B1 SINE B4 -1 223 1 8 1077 339 25 0 0 chr5 64499527 64499567 -88037692 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1077 208 39 96 19 chr5 64499581 64499633 -88037626 + (TA)n Simple_repeat Simple_repeat 1 56 0 8 1077 441 190 19 48 chr5 64499887 64499992 -88037267 + RMER10A LTR ERVL 1 102 -340 8 1077 949 223 91 39 chr5 64500000 64500285 -88036974 + RMER10A LTR ERVL 137 436 -6 1 1077 1102 87 118 0 chr5 64500568 64500729 -88036530 - B2_Mm2 SINE B2 -14 181 2 2 1077 261 0 0 0 chr5 64501216 64501245 -88036014 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1077 1204 55 0 0 chr5 64501245 64501391 -88035868 - B1_Mus1 SINE Alu -2 146 1 4 1077 314 258 149 11 chr5 64501396 64501490 -88035769 - PB1D10 SINE Alu -2 115 9 5 1077 326 282 42 0 chr5 64501430 64501501 -88035758 - ID_B1 SINE B4 -74 150 77 6 1077 407 167 14 14 chr5 64501517 64501590 -88035669 - tRNA-Val-GTA tRNA tRNA -3 73 1 7 1077 498 270 222 10 chr5 64502312 64502510 -88034749 - B4 SINE B4 -51 241 2 8 1077 324 304 41 65 chr5 64502513 64502542 -88034717 - HAL1-3A_ME LINE L1 -779 2079 2051 9 1077 1095 210 9 61 chr5 64502542 64502770 -88034489 - B3 SINE B2 0 216 1 1 1077 324 304 41 65 chr5 64502770 64502863 -88034396 - HAL1-3A_ME LINE L1 -808 2050 1961 9 1077 216 0 0 0 chr5 64502863 64502887 -88034372 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1077 383 56 19 0 chr5 64502887 64502941 -88034318 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1077 631 253 33 0 chr5 64502943 64503093 -88034166 - RSINE1 SINE B4 -9 156 2 1 1077 312 308 0 27 chr5 64503534 64503656 -88033603 + BC1_Mm scRNA scRNA 3 121 -31 1 1077 292 279 10 140 chr5 64503889 64503989 -88033270 + B1_Mus2 SINE Alu 1 87 -60 1 1077 301 308 90 8 chr5 64503998 64504132 -88033127 - MER5A DNA MER1_type -44 145 1 1 1077 462 281 52 117 chr5 64505286 64505576 -88031683 - ORR1E LTR MaLR -8 351 81 1 1077 26 50 0 0 chr5 64506049 64506089 -88031170 + AT_rich Low_complexity Low_complexity 1 40 0 1 1077 2399 104 6 0 chr5 64506832 64507159 -88030100 - ORR1A4 LTR MaLR 0 329 1 1 1077 723 107 30 69 chr5 64508373 64508504 -88028755 - B1_Mur4 SINE Alu 0 150 25 2 1077 35995 35 0 0 chr5 64508986 64514605 -88022654 + L1Md_T LINE L1 1 5589 -297 2 1077 9123 8 0 0 chr5 64514605 64515601 -88021658 + L1Md_T LINE L1 5590 6585 0 2 1077 396 291 97 23 chr5 64516003 64516179 -88021080 - MIRb SINE MIR -16 252 64 2 1077 23 0 0 0 chr5 64516494 64516517 -88020742 + AT_rich Low_complexity Low_complexity 1 23 0 2 1077 234 215 25 25 chr5 64516524 64516605 -88020654 + T-rich Low_complexity Low_complexity 6 86 0 2 1077 324 0 0 0 chr5 64516605 64516641 -88020618 + (GA)n Simple_repeat Simple_repeat 1 36 0 2 1077 1227 116 3 7 chr5 64516719 64516909 -88020350 + B2_Mm2 SINE B2 1 193 0 2 1077 767 119 111 24 chr5 64517776 64517950 -88019309 - B3 SINE B2 -8 187 2 2 1077 418 265 45 36 chr5 64517980 64518162 -88019097 + B3A SINE B2 1 184 -11 2 1077 247 253 154 87 chr5 64518193 64518297 -88018962 + PB1D10 SINE Alu 1 111 -6 2 1077 1198 68 0 0 chr5 64518308 64518455 -88018804 + B1_Mus2 SINE Alu 1 147 0 3 1077 275 274 0 97 chr5 64518462 64518473 -88018786 + MT2B LTR ERVL 155 156 -445 3 1077 571 248 13 90 chr5 64518473 64518610 -88018649 + B1_Mur1 SINE Alu 1 129 -20 3 1077 2294 73 51 6 chr5 64518610 64518925 -88018334 - ORR1A4 LTR MaLR 0 329 1 3 1077 571 248 13 90 chr5 64518925 64518942 -88018317 + B1_Mur1 SINE Alu 130 143 -6 3 1077 28 0 0 0 chr5 64519258 64519286 -88017973 + AT_rich Low_complexity Low_complexity 1 28 0 3 1077 503 140 105 21 chr5 64519768 64519863 -88017396 - B1_Mur1 SINE Alu -10 139 37 3 1077 558 210 108 60 chr5 64520005 64520172 -88017087 + RMER5 LTR ERV1 360 534 0 3 1077 532 185 11 0 chr5 64520243 64520335 -88016924 + PB1D9 SINE Alu 10 102 -18 3 1077 315 0 0 0 chr5 64520335 64520370 -88016889 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1077 1086 79 0 0 chr5 64520370 64520509 -88016750 - B1_Mus2 SINE Alu -8 139 1 3 1077 190 308 165 13 chr5 64520703 64520782 -88016477 - L2b LINE L2 -36 3339 3249 4 1077 1876 220 41 78 chr5 64521116 64521734 -88015525 + RLTR31_Mur LTR ERVK 12 553 0 4 1077 260 290 34 0 chr5 64521752 64521848 -88015411 + MIRb SINE MIR 25 131 -137 4 1077 713 12 12 0 chr5 64521848 64521934 -88015325 + (TC)n Simple_repeat Simple_repeat 2 88 0 4 1077 381 236 75 75 chr5 64521943 64521994 -88015265 - L1MC1 LINE L1 0 6333 6305 4 1077 1086 93 0 0 chr5 64521994 64522133 -88015126 - B1_Mus1 SINE Alu -8 140 2 4 1077 381 236 75 75 chr5 64522133 64522290 -88014969 - L1MC1 LINE L1 -29 6304 6146 4 1077 609 290 56 28 chr5 64522287 64522500 -88014759 + L1MC1 LINE L1 5945 6163 -170 4 1077 359 353 50 0 chr5 64522575 64522694 -88014565 - RSINE1 SINE B4 -39 126 2 4 1077 274 232 265 65 chr5 64522870 64523097 -88014162 + RMER10A LTR ERVL 1 273 -169 4 1077 1010 246 19 0 chr5 64524316 64524523 -88012736 - B3 SINE B2 -5 211 1 4 1077 386 191 0 14 chr5 64524582 64524651 -88012608 + ID4_ SINE ID 2 69 -14 4 1077 273 103 4 0 chr5 64524670 64524716 -88012543 - MT2A LTR ERVL -3 530 444 5 1077 1064 194 4 101 chr5 64524736 64524983 -88012276 - MT2A LTR ERVL -309 224 2 5 1077 429 324 157 52 chr5 64525907 64526059 -88011200 - L1MC5 LINE L1 -91 7870 7694 5 1077 291 54 0 0 chr5 64526059 64526096 -88011163 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1077 429 324 157 52 chr5 64526096 64526458 -88010801 - L1MC5 LINE L1 -268 7693 7303 5 1077 317 298 0 77 chr5 64526541 64526632 -88010627 + RSINE1 SINE B4 82 165 0 5 1077 22 35 0 0 chr5 64526632 64526661 -88010598 + AT_rich Low_complexity Low_complexity 1 29 0 5 1077 477 254 93 58 chr5 64526708 64526915 -88010344 + B4A SINE B4 1 260 -32 5 1077 2511 129 10 20 chr5 64526915 64527311 -88009948 + ORR1B1 LTR MaLR 1 392 -2 5 1077 377 254 74 68 chr5 64527311 64527352 -88009907 + B4A SINE B4 261 292 0 5 1077 236 191 0 21 chr5 64527353 64527401 -88009858 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1077 621 217 15 15 chr5 64527683 64527814 -88009445 - B3 SINE B2 -3 213 83 5 1077 336 48 0 0 chr5 64528138 64528180 -88009079 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1077 2672 139 101 34 chr5 64528551 64528639 -88008620 - RLTR20A LTR ERVK 0 541 450 6 1077 393 22 0 0 chr5 64528639 64528685 -88008574 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1077 2672 139 101 34 chr5 64528685 64529101 -88008158 - RLTR20A LTR ERVK -92 449 4 6 1077 557 187 0 0 chr5 64529122 64529213 -88008046 + B3 SINE B2 3 93 -123 6 1077 447 137 0 0 chr5 64529730 64529803 -88007456 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 1077 240 35 0 0 chr5 64529803 64529832 -88007427 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1077 317 109 0 0 chr5 64529857 64529903 -88007356 + B2_Mm2 SINE B2 1 46 -149 6 1077 384 230 22 54 chr5 64529897 64529989 -88007270 + B3 SINE B2 128 216 0 6 1077 348 350 102 55 chr5 64530084 64530377 -88006882 - ORR1E LTR MaLR -43 316 10 6 1077 635 234 29 21 chr5 64530618 64530758 -88006501 - B1_Mur3 SINE Alu 0 149 9 6 1077 371 272 6 93 chr5 64530758 64530780 -88006479 - ID_B1 SINE B4 0 224 77 6 1077 598 279 159 53 chr5 64530806 64530829 -88006430 - B4 SINE B4 -61 231 210 7 1077 1912 109 111 10 chr5 64530829 64531126 -88006133 - ORR1A2 LTR MaLR 0 327 1 7 1077 598 279 159 53 chr5 64531126 64531310 -88005949 - B4 SINE B4 -83 209 2 7 1077 654 302 89 67 chr5 64532477 64532885 -88004374 + RMER13A LTR ERVK 145 607 -20 7 1077 333 0 0 0 chr5 64533227 64533264 -88003995 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 1077 632 180 140 26 chr5 64533296 64533455 -88003804 - MTD LTR MaLR -14 405 237 7 1077 346 296 61 88 chr5 64533421 64533467 -88003792 + MT2B LTR ERVL 130 270 -328 7 1077 631 182 0 0 chr5 64533467 64533566 -88003693 + B1_Mm SINE Alu 19 117 -30 7 1077 261 244 123 57 chr5 64533489 64533611 -88003648 + RLTR25B LTR ERVK 442 571 -457 7 1077 425 255 86 75 chr5 64533585 64533759 -88003500 - MTD LTR MaLR -190 189 14 7 1077 795 212 108 5 chr5 64534227 64534412 -88002847 - B3 SINE B2 -11 205 2 7 1077 23 0 0 0 chr5 64534440 64534463 -88002796 + AT_rich Low_complexity Low_complexity 1 23 0 7 1077 230 203 68 0 chr5 64534627 64534686 -88002573 + LTR40a LTR ERVL 1 63 -456 8 1077 2297 168 11 5 chr5 64534690 64535072 -88002187 - ORR1B1 LTR MaLR -10 384 1 8 1077 419 233 114 100 chr5 64535086 64535296 -88001963 + LTR40a LTR ERVL 72 284 -235 8 1077 503 188 52 0 chr5 64535389 64535485 -88001774 + Lx7 LINE L1 5498 5598 -282 8 1077 261 0 0 0 chr5 64535897 64535926 -88001333 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 8 1077 678 199 0 0 chr5 64536007 64536138 -88001121 + RMER1B Other Other 44 174 -892 8 1077 2022 77 0 0 chr5 64536138 64536412 -88000847 - MTB-int LTR MaLR -824 274 1 8 1077 1636 75 15 13 chr5 64536414 64536642 -88000617 - MTB LTR MaLR -2 398 135 8 1077 685 187 172 18 chr5 64536651 64536814 -88000445 + RMER1B Other Other 227 414 -652 8 1077 279 278 67 100 chr5 64536800 64536920 -88000339 + RMER1A Other Other 16 131 -899 8 1077 342 0 0 0 chr5 64536952 64536990 -88000269 + (GA)n Simple_repeat Simple_repeat 1 38 0 8 1077 1229 284 74 13 chr5 64537002 64537380 -87999879 + RMER1A Other Other 55 455 -575 8 1077 3299 232 195 7 chr5 64537416 64538278 -87998981 + RMER1A Other Other 1 1024 -6 8 1077 5436 195 142 37 chr5 64538289 64538422 -87998837 + Lx7 LINE L1 5587 5744 -1716 8 1077 396 0 0 0 chr5 64538422 64538466 -87998793 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 1077 5436 195 142 37 chr5 64538466 64538713 -87998546 + Lx7 LINE L1 5745 6037 -1423 8 1077 243 0 0 0 chr5 64538713 64538740 -87998519 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 9 1077 6659 196 111 44 chr5 64538740 64540317 -87996942 + Lx7 LINE L1 6038 7695 -1 8 1077 27 0 0 0 chr5 64540654 64540681 -87996578 + AT_rich Low_complexity Low_complexity 1 27 0 9 1077 307 250 170 21 chr5 64542341 64542435 -87994824 + PB1D10 SINE Alu 10 117 0 9 1077 264 242 20 59 chr5 64542467 64542487 -87994772 + MT2B2 LTR ERVL 144 159 -425 9 1077 652 174 61 0 chr5 64542487 64542602 -87994657 + B1_Mur1 SINE Alu 2 123 -26 9 1077 306 0 0 0 chr5 64542604 64542638 -87994621 + (TC)n Simple_repeat Simple_repeat 2 35 0 9 1077 441 0 0 0 chr5 64542638 64542686 -87994573 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1077 2545 152 12 33 chr5 64542918 64543346 -87993913 - MTC LTR MaLR -2 419 1 9 1077 421 275 23 125 chr5 64543448 64543664 -87993595 + Charlie18a DNA MER1_type 133 326 -16 9 1077 213 39 0 0 chr5 64543736 64543762 -87993497 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1077 240 35 0 0 chr5 64543762 64543790 -87993469 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1077 1689 26 0 0 chr5 64543876 64544065 -87993194 + B2_Mm1a SINE B2 1 189 -4 1 1077 1059 77 21 0 chr5 64545744 64545887 -87991372 - B1_Mm SINE Alu -1 146 1 1 1077 591 185 174 33 chr5 64545908 64546092 -87991167 - B3 SINE B2 -4 212 3 1 1077 472 322 157 34 chr5 64546114 64546315 -87990944 - L2a LINE L2 0 3426 3196 1 1077 330 26 0 0 chr5 64546315 64546354 -87990905 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1077 472 322 157 34 chr5 64546354 64546599 -87990660 - L2a LINE L2 -231 3195 2925 1 1077 2287 164 35 21 chr5 64546636 64547059 -87990200 + RMER10A LTR ERVL 1 429 -13 1 1077 25 51 0 0 chr5 64547081 64547120 -87990139 + AT_rich Low_complexity Low_complexity 1 39 0 1 1077 289 324 93 29 chr5 64547141 64547281 -87989978 - L2a LINE L2 -565 2854 2706 1 1077 512 236 38 0 chr5 64548421 64548527 -87988732 + PB1D10 SINE Alu 1 110 -7 1 1077 259 260 272 0 chr5 64548560 64548733 -87988526 - ID_B1 SINE B4 -4 220 1 1 1077 387 0 0 0 chr5 64549167 64549210 -87988049 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1077 276 102 0 0 chr5 64549563 64549612 -87987647 + (T)n Simple_repeat Simple_repeat 1 49 0 1 1077 576 0 0 0 chr5 64550337 64550401 -87986858 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1077 491 0 17 0 chr5 64553859 64553918 -87983341 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1077 341 286 73 37 chr5 64554540 64554649 -87982610 + ID_B1 SINE B4 86 198 -26 1 1077 293 226 32 16 chr5 64554748 64554811 -87982448 + PB1 SINE Alu 11 74 -43 1 1077 353 211 14 0 chr5 64554855 64554926 -87982333 + ID4_ SINE ID 1 72 -11 1 1077 233 367 13 0 chr5 64555211 64555290 -87981969 + MIRb SINE MIR 20 99 -169 1 1077 262 309 62 26 chr5 64555379 64555492 -87981767 + MIRm SINE MIR 20 136 -140 1 1077 804 206 0 0 chr5 64556148 64556284 -87980975 - B1_Mur2 SINE Alu -9 140 5 1 1077 1532 238 71 13 chr5 64556362 64556758 -87980501 + MTD LTR MaLR 1 419 0 1 1077 241 270 77 39 chr5 64557012 64557116 -87980143 - ORR1E LTR MaLR -248 111 4 1 1077 437 254 0 26 chr5 64558105 64558218 -87979041 - MTEb LTR MaLR 0 379 270 1 1077 22 0 0 0 chr5 64559141 64559163 -87978096 + AT_rich Low_complexity Low_complexity 1 22 0 1 1077 551 269 55 65 chr5 64559179 64559378 -87977881 + B3A SINE B2 1 197 -1 1 1077 501 320 17 19 chr5 64559765 64559978 -87977281 + LTR40a LTR ERVL 2 223 -239 1 1077 186 43 0 0 chr5 64560076 64560099 -87977160 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1077 1335 24 130 0 chr5 64560132 64560301 -87976958 - B2_Mm1a SINE B2 -1 192 2 1 1077 448 325 62 47 chr5 64561649 64561907 -87975352 + B4A SINE B4 28 289 -3 1 1077 1182 237 185 27 chr5 64562801 64562829 -87974430 - RLTR20A2 LTR ERVK -17 561 535 1 1077 333 0 0 0 chr5 64562829 64562866 -87974393 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1077 1182 237 185 27 chr5 64562866 64563318 -87973941 - RLTR20A2 LTR ERVK -44 534 5 1 1077 1329 114 109 0 chr5 64563326 64563528 -87973731 + URR1A DNA MER1_type 3 226 0 1 1077 720 218 207 0 chr5 64563699 64563878 -87973381 + B3 SINE B2 1 216 0 1 1077 228 250 0 0 chr5 64563937 64563993 -87973266 + ID4 SINE ID 5 60 -23 1 1077 364 250 0 0 chr5 64564246 64564326 -87972933 - B3A SINE B2 -118 80 1 1 1077 292 323 116 75 chr5 64565697 64566042 -87971217 - Charlie7 DNA MER1_type -1931 681 323 1 1077 315 264 0 11 chr5 64566260 64566348 -87970911 - ID_B1 SINE B4 -56 168 82 1 1077 677 311 98 19 chr5 64566487 64566802 -87970457 + MER2 DNA MER2_type 4 343 -2 1 1077 306 87 0 0 chr5 64567010 64567056 -87970203 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1077 446 244 130 0 chr5 64567194 64567325 -87969934 + MIR SINE MIR 48 195 -67 1 1077 612 234 35 7 chr5 64567529 64567671 -87969588 - RSINE1 SINE B4 -17 148 3 1 1077 579 29 0 0 chr5 64567876 64567945 -87969314 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1077 472 206 85 35 chr5 64568693 64568806 -87968453 + B1_Mur1 SINE Alu 1 117 -32 1 1077 963 158 0 0 chr5 64568806 64568952 -87968307 - B1_Mus1 SINE Alu -1 147 2 1 1077 472 206 85 35 chr5 64568952 64568979 -87968280 + B1_Mur1 SINE Alu 118 147 -2 1 1077 1013 320 87 19 chr5 64568982 64569559 -87967700 - Charlie1a DNA MER1_type -46 1409 794 1 1077 464 207 139 79 chr5 64569579 64569730 -87967529 - B3A SINE B2 -25 173 1 1 1077 648 280 72 10 chr5 64569747 64569942 -87967317 - B3 SINE B2 -4 212 6 1 1077 455 320 14 7 chr5 64570445 64570593 -87966666 - RSINE1 SINE B4 -14 151 3 1 1077 862 299 76 45 chr5 64570899 64571256 -87966003 - MTEb LTR MaLR -9 370 3 1 1077 486 184 0 0 chr5 64571422 64571509 -87965750 + B1_Mur3 SINE Alu 58 144 -5 1 1077 189 0 0 0 chr5 64572205 64572226 -87965033 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1077 456 292 74 32 chr5 64572371 64572654 -87964605 + MER33 DNA MER1_type 26 320 -4 1 1077 228 194 0 0 chr5 64572661 64572697 -87964562 + L1M3e LINE L1 1808 1843 -5187 1 1077 267 31 0 0 chr5 64573152 64573184 -87964075 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1077 298 205 167 67 chr5 64573186 64573306 -87963953 - MLT2B4 LTR ERVL -424 132 1 1 1077 3404 89 4 41 chr5 64573413 64573927 -87963332 + L1_Mus3 LINE L1 6143 6637 -1 1 1077 989 168 178 0 chr5 64573932 64574123 -87963136 + URR1B DNA MER1_type 1 225 0 1 1077 1193 184 5 10 chr5 64574419 64574627 -87962632 + B3 SINE B2 1 207 -9 1 1077 22 0 0 0 chr5 64574627 64574649 -87962610 + AT_rich Low_complexity Low_complexity 1 22 0 1 1077 526 222 8 8 chr5 64574673 64574791 -87962468 + B1F2 SINE Alu 1 118 -31 1 1077 201 39 0 0 chr5 64574859 64574885 -87962374 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1077 972 82 59 0 chr5 64575788 64575923 -87961336 + B1_Mus1 SINE Alu 3 145 -3 1 1077 513 213 0 36 chr5 64576102 64576214 -87961045 + ORR1D1 LTR MaLR 259 366 -8 1 1077 681 171 25 8 chr5 64576238 64576356 -87960903 - PB1D9 SINE Alu 0 120 1 1 1077 21 0 0 0 chr5 64577295 64577316 -87959943 + AT_rich Low_complexity Low_complexity 1 21 0 1 1077 224 149 21 0 chr5 64577490 64577537 -87959722 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 1 1077 1142 68 0 0 chr5 64577630 64577776 -87959483 - B1_Mus1 SINE Alu -1 147 2 1 1077 485 245 9 0 chr5 64577847 64577953 -87959306 - ID_B1 SINE B4 -37 187 81 1 1077 233 244 36 60 chr5 64578333 64578416 -87958843 + MIR SINE MIR 69 149 -113 1 1077 207 0 0 0 chr5 64578441 64578464 -87958795 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1077 351 0 0 0 chr5 64578574 64578613 -87958646 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1077 420 276 136 66 chr5 64578659 64578931 -87958328 - B4A SINE B4 -1 291 1 1 1077 241 281 67 0 chr5 64578934 64579023 -87958236 - PB1D7 SINE Alu -20 100 6 1 1077 941 118 28 0 chr5 64579046 64579190 -87958069 - B1_Mur4 SINE Alu 0 150 3 1 1077 233 322 33 11 chr5 64579992 64580083 -87957176 - MIRc SINE MIR -116 152 60 1 1077 456 197 0 0 chr5 64580409 64580485 -87956774 + ID4 SINE ID 2 77 -6 1 1077 234 0 0 0 chr5 64580485 64580511 -87956748 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 1077 255 137 27 14 chr5 64581634 64581708 -87955551 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 1 1077 648 236 79 0 chr5 64582318 64582458 -87954801 - B3A SINE B2 -47 151 1 1 1077 270 0 0 0 chr5 64582715 64582745 -87954514 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1077 237 337 87 0 chr5 64582965 64583137 -87954122 + L1M5 LINE L1 5677 5863 -377 1 1077 551 261 36 12 chr5 64583306 64583473 -87953786 + ORR1D2 LTR MaLR 22 192 -178 1 1077 345 109 0 0 chr5 64583824 64583888 -87953371 + (TA)n Simple_repeat Simple_repeat 1 64 0 1 1077 423 0 0 0 chr5 64583954 64584001 -87953258 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1077 328 312 23 0 chr5 64584121 64584249 -87953010 + B1F SINE Alu 2 132 -17 1 1077 1174 30 0 0 chr5 64585323 64585458 -87951801 + B1_Mus2 SINE Alu 4 138 -9 1 1077 476 212 0 7 chr5 64585608 64585746 -87951513 + CT-rich Low_complexity Low_complexity 2 138 0 1 1077 495 231 0 92 chr5 64585759 64585878 -87951381 - B1_Mur1 SINE Alu -41 108 1 1 1077 454 233 253 11 chr5 64585909 64586083 -87951176 - B3 SINE B2 0 216 1 1 1077 234 0 0 0 chr5 64586270 64586296 -87950963 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1077 301 214 19 0 chr5 64586354 64586457 -87950802 + (TA)n Simple_repeat Simple_repeat 2 106 0 1 1077 342 91 0 0 chr5 64586507 64586562 -87950697 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1077 568 231 15 8 chr5 64586631 64586762 -87950497 - RSINE1 SINE B4 -31 134 3 1 1077 895 102 31 5 chr5 64586766 64587188 -87950071 + (TG)n Simple_repeat Simple_repeat 1 433 0 1 1077 392 300 23 0 chr5 64587188 64587318 -87949941 - ID_B1 SINE B4 -5 219 87 1 1077 613 179 75 192 chr5 64587685 64587899 -87949360 - B3A SINE B2 -5 190 2 1 1077 267 31 0 0 chr5 64588447 64588479 -87948780 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1077 815 203 197 6 chr5 64589007 64589185 -87948074 - B3 SINE B2 -4 212 1 1 1077 190 284 101 11 chr5 64589679 64589768 -87947491 + L2a LINE L2 3298 3394 -32 1 1077 243 88 0 0 chr5 64589788 64589822 -87947437 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 2 1077 195 42 0 0 chr5 64591492 64591516 -87945743 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1077 792 165 38 0 chr5 64591517 64591650 -87945609 - B1_Mus1 SINE Alu -10 138 1 2 1077 1209 40 0 0 chr5 64591660 64591811 -87945448 + (TTTC)n Simple_repeat Simple_repeat 1 151 0 2 1077 370 272 0 17 chr5 64591872 64591973 -87945286 - ID4_ SINE ID -53 99 6 2 1077 418 212 0 30 chr5 64592889 64593193 -87944066 + (TG)n Simple_repeat Simple_repeat 1 294 0 2 1077 344 222 24 0 chr5 64593560 64593643 -87943616 - MIRc SINE MIR -110 158 77 2 1077 532 156 229 0 chr5 64593816 64593925 -87943334 + B1_Mur3 SINE Alu 9 142 -7 2 1077 508 300 92 43 chr5 64593948 64594221 -87943038 - L1MB8 LINE L1 -11 6167 5884 2 1077 231 61 0 0 chr5 64594221 64594254 -87943005 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2 1077 508 300 92 43 chr5 64594254 64594425 -87942834 - L1MB8 LINE L1 -295 5883 5702 2 1077 228 246 54 68 chr5 64594450 64594524 -87942735 - tRNA-Ala-GCG tRNA tRNA -2 73 1 2 1077 488 354 38 0 chr5 64595205 64595417 -87941842 - MER58A DNA MER1_type -2 222 3 2 1077 602 261 169 24 chr5 64595958 64596213 -87941046 - B4 SINE B4 0 292 1 2 1077 289 257 65 28 chr5 64596350 64596458 -87940801 - L1MC1 LINE L1 -163 6170 6059 2 1077 359 320 68 0 chr5 64596560 64596766 -87940493 + L1MC5 LINE L1 7697 7916 -45 2 1077 791 272 19 148 chr5 64597681 64598108 -87939151 + MTE2b LTR MaLR 8 379 0 2 1077 246 32 0 0 chr5 64598637 64598668 -87938591 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1077 425 274 9 0 chr5 64599244 64599350 -87937909 + MER5A1 DNA MER1_type 50 156 -10 2 1077 765 190 0 0 chr5 64600097 64600234 -87937025 + B1_Mur4 SINE Alu 4 140 -10 2 1077 531 0 0 0 chr5 64600237 64600296 -87936963 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1077 477 179 69 34 chr5 64600360 64600536 -87936723 - RMER4B LTR ERVK -194 272 74 2 1077 22 70 0 0 chr5 64600977 64601020 -87936239 + AT_rich Low_complexity Low_complexity 1 43 0 2 1077 477 0 0 0 chr5 64601291 64601344 -87935915 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1077 279 0 0 0 chr5 64601491 64601522 -87935737 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1077 242 341 0 12 chr5 64601847 64601930 -87935329 + ID4 SINE ID 2 83 0 2 1077 252 0 0 0 chr5 64602013 64602041 -87935218 + (CTAA)n Simple_repeat Simple_repeat 3 30 0 2 1077 195 100 0 0 chr5 64602083 64602113 -87935146 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1077 542 283 14 20 chr5 64602113 64602261 -87934998 - RSINE1 SINE B4 -16 149 3 2 1077 1509 283 36 26 chr5 64602274 64602742 -87934517 - RCHARR1 DNA MER1_type -493 481 9 2 1077 327 252 10 76 chr5 64602878 64603009 -87934250 + MLT1A1 LTR MaLR 241 408 0 2 1077 26 0 0 0 chr5 64603073 64603099 -87934160 + AT_rich Low_complexity Low_complexity 1 26 0 2 1077 223 302 83 53 chr5 64603262 64603395 -87933864 - MIRm SINE MIR -137 139 3 2 1077 375 41 0 0 chr5 64604732 64604781 -87932478 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2 1077 490 217 57 98 chr5 64604781 64604975 -87932284 - Lx5 LINE L1 -1 7049 6864 2 1077 1336 70 16 0 chr5 64605579 64605764 -87931495 - B2_Mm2 SINE B2 -5 190 3 2 1077 7021 31 14 0 chr5 64606086 64606900 -87930359 - L1Md_A LINE L1 0 6582 5758 2 1077 782 256 64 39 chr5 64607101 64607382 -87929877 + B4A SINE B4 5 292 0 2 1077 242 280 88 36 chr5 64607486 64607623 -87929636 - MLT1A1 LTR MaLR 0 408 265 2 1077 1029 184 86 10 chr5 64607968 64608166 -87929093 + B3 SINE B2 1 213 -3 2 1077 383 290 61 0 chr5 64609002 64609133 -87928126 - B1F1 SINE Alu -1 148 10 2 1077 383 173 0 12 chr5 64609768 64609850 -87927409 + C-rich Low_complexity Low_complexity 5 85 0 2 1077 514 269 15 8 chr5 64610027 64610158 -87927101 + RSINE1 SINE B4 3 134 -31 2 1077 21 0 0 0 chr5 64610491 64610512 -87926747 + AT_rich Low_complexity Low_complexity 1 21 0 2 1077 730 228 29 190 chr5 64610520 64610867 -87926392 - B4 SINE B4 0 292 2 2 1077 2526 105 108 22 chr5 64612127 64612544 -87924715 - RLTR11B LTR ERVK 0 453 1 2 1077 242 56 0 27 chr5 64612896 64612933 -87924326 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1077 509 280 70 70 chr5 64613114 64613398 -87923861 + B4A SINE B4 1 284 -8 2 1077 365 220 73 0 chr5 64613604 64613713 -87923546 - L1MB7 LINE L1 -88 6096 5980 2 1077 2997 184 16 27 chr5 64613730 64613929 -87923330 - RMER15 LTR ERVL 0 575 381 2 1077 1452 57 0 6 chr5 64613929 64614097 -87923162 + B2_Mm1t SINE B2 1 168 -25 2 1077 216 0 0 0 chr5 64614097 64614121 -87923138 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1077 2997 184 16 27 chr5 64614130 64614478 -87922781 - RMER15 LTR ERVL -195 380 34 2 1077 508 215 108 0 chr5 64614492 64614622 -87922637 - L1MB8 LINE L1 -198 5980 5837 2 1077 2127 144 10 67 chr5 64614790 64614862 -87922397 - ORR1C1 LTR MaLR 0 378 308 2 1077 1305 92 54 0 chr5 64614862 64615046 -87922213 + B2_Mm2 SINE B2 2 195 0 2 1077 2127 144 10 67 chr5 64615046 64615374 -87921885 - ORR1C1 LTR MaLR -71 307 1 2 1077 890 196 77 0 chr5 64615436 64615630 -87921629 - B3 SINE B2 -7 209 1 2 1077 235 246 0 32 chr5 64615709 64615772 -87921487 + C-rich Low_complexity Low_complexity 1 61 0 2 1077 192 248 103 56 chr5 64615997 64616104 -87921155 + L2a LINE L2 3315 3426 0 2 1077 216 0 0 0 chr5 64616266 64616290 -87920969 + (TCC)n Simple_repeat Simple_repeat 3 26 0 2 1077 281 91 0 64 chr5 64616425 64616472 -87920787 + L1_Rod LINE L1 5137 5180 -667 2 1077 330 26 0 0 chr5 64616807 64616846 -87920413 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 2 1077 977 254 39 51 chr5 64616869 64617126 -87920133 - MTEa LTR MaLR -108 271 18 2 1077 288 0 0 0 chr5 64618196 64618228 -87919031 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 1077 498 191 80 18 chr5 64618243 64618355 -87918904 - PB1 SINE Alu -6 121 3 2 1078 439 327 43 48 chr5 64618774 64618983 -87918276 - MER21B LTR ERV1 -61 802 595 2 1078 387 220 69 10 chr5 64618988 64619089 -87918170 - PB1D10 SINE Alu 0 117 11 2 1078 595 299 167 10 chr5 64619080 64619192 -87918067 - MER21B LTR ERV1 -266 597 466 2 1078 1310 113 111 19 chr5 64619192 64619399 -87917860 - URR1A DNA MER1_type 0 226 1 2 1078 595 299 167 10 chr5 64619399 64619580 -87917679 - MER21B LTR ERV1 -398 465 258 2 1078 427 256 89 26 chr5 64620307 64620460 -87916799 + MLT1F2 LTR MaLR 40 249 -346 2 1078 21 0 0 0 chr5 64621797 64621818 -87915441 + GC_rich Low_complexity Low_complexity 1 21 0 2 1078 243 216 27 95 chr5 64622348 64622496 -87914763 + RMER17A LTR ERVK 329 466 -285 2 1078 243 0 0 0 chr5 64622545 64622572 -87914687 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1078 824 167 57 6 chr5 64622852 64623027 -87914232 - B2_Mm2 SINE B2 -8 187 4 2 1078 533 248 0 78 chr5 64623588 64623741 -87913518 - B1_Mur2 SINE Alu -6 143 3 2 1078 580 267 94 12 chr5 64623810 64623865 -87913394 + ID_B1 SINE B4 29 91 -201 2 1078 215 336 88 68 chr5 64623865 64624012 -87913247 + B1_Mur4 SINE Alu 1 150 0 2 1078 384 200 37 24 chr5 64625060 64625142 -87912117 - PB1D9 SINE Alu 0 120 38 2 1078 333 0 0 0 chr5 64625183 64625220 -87912039 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1078 383 257 2 7 chr5 64625220 64625310 -87911949 - PB1D9 SINE Alu -226 88 1 2 1078 228 303 124 42 chr5 64625453 64625646 -87911613 - L2a LINE L2 -28 3398 3190 2 1078 1128 48 0 52 chr5 64627247 64627400 -87909859 + B1_Mus1 SINE Alu 3 147 -1 2 1078 225 0 0 0 chr5 64628383 64628408 -87908851 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1078 629 239 69 60 chr5 64628871 64629103 -87908156 - Lx9 LINE L1 -294 7350 7117 2 1078 234 0 0 0 chr5 64629173 64629199 -87908060 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1078 950 152 96 10 chr5 64630238 64630437 -87906822 - B3 SINE B2 0 216 1 2 1078 448 272 88 10 chr5 64630462 64630655 -87906604 - L1MA8 LINE L1 -5 6286 6079 2 1078 202 233 33 16 chr5 64631117 64631178 -87906081 + CT-rich Low_complexity Low_complexity 2 63 0 2 1078 372 211 0 0 chr5 64631725 64631796 -87905463 - ID4_ SINE ID -9 74 4 2 1078 545 271 105 65 chr5 64631866 64632142 -87905117 + B4A SINE B4 1 287 -5 2 1078 217 267 57 149 chr5 64633523 64633664 -87903595 + ID_B1 SINE B4 2 129 -95 2 1078 215 170 21 0 chr5 64633666 64633713 -87903546 + (GGGTG)n Simple_repeat Simple_repeat 5 52 0 2 1078 781 248 64 0 chr5 64633804 64634006 -87903253 + B3 SINE B2 2 216 0 2 1078 206 200 40 0 chr5 64634091 64634141 -87903118 + (CATG)n Simple_repeat Simple_repeat 1 52 0 2 1078 186 295 168 9 chr5 64634620 64634733 -87902526 + MIR3 SINE MIR 31 161 -47 2 1078 29 0 0 0 chr5 64635891 64635920 -87901339 + AT_rich Low_complexity Low_complexity 1 29 0 2 1078 343 220 84 42 chr5 64636549 64636644 -87900615 - PB1D9 SINE Alu -5 115 17 2 1078 360 0 0 0 chr5 64637608 64637648 -87899611 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1078 515 238 125 45 chr5 64638302 64638478 -87898781 + Charlie4a DNA MER1_type 1 190 -318 2 1078 974 241 62 55 chr5 64638515 64638787 -87898472 - B4A SINE B4 -5 287 14 2 1078 213 213 48 62 chr5 64638795 64638940 -87898319 + (CACTG)n Simple_repeat Simple_repeat 5 147 0 2 1078 243 190 34 81 chr5 64638983 64639132 -87898127 + (CACTG)n Simple_repeat Simple_repeat 1 142 0 2 1078 224 214 47 60 chr5 64639175 64639324 -87897935 + (CACTG)n Simple_repeat Simple_repeat 1 147 0 2 1078 284 201 44 66 chr5 64639495 64639676 -87897583 + (CACTG)n Simple_repeat Simple_repeat 1 177 0 2 1078 591 263 191 68 chr5 64639707 64640090 -87897169 - MER21B LTR ERV1 -202 661 232 2 1078 774 105 0 0 chr5 64640118 64640232 -87897027 + (TC)n Simple_repeat Simple_repeat 1 114 0 3 1078 223 170 42 21 chr5 64640234 64640282 -87896977 + CT-rich Low_complexity Low_complexity 4 52 0 3 1078 1319 139 21 17 chr5 64640282 64640516 -87896743 + RLTR22_Mus LTR ERVK 504 738 -1070 3 1078 219 36 0 0 chr5 64640996 64641024 -87896235 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1078 951 121 0 29 chr5 64641166 64641302 -87895957 + B1_Mur3 SINE Alu 5 136 -13 3 1078 490 272 179 21 chr5 64642008 64642248 -87895011 - B4A SINE B4 -8 284 7 3 1078 1257 48 0 0 chr5 64642314 64642461 -87894798 - B1_Mus2 SINE Alu 0 147 1 3 1078 1659 21 5 0 chr5 64643549 64643740 -87893519 - B2_Mm1a SINE B2 0 193 2 3 1078 249 108 0 0 chr5 64644104 64644141 -87893118 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1078 1219 42 0 0 chr5 64644141 64644284 -87892975 - B1_Mus2 SINE Alu 0 147 5 3 1078 496 271 25 0 chr5 64646360 64646482 -87890777 + RSINE1 SINE B4 3 127 -38 3 1078 562 238 35 14 chr5 64646553 64646698 -87890561 - B1_Mur3 SINE Alu -1 148 1 3 1078 616 233 67 17 chr5 64646742 64646759 -87890500 - B2_Mm2 SINE B2 -3 192 176 3 1078 225 0 0 0 chr5 64646759 64646784 -87890475 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1078 654 233 67 17 chr5 64646784 64646945 -87890314 - B3 SINE B2 -32 184 5 3 1078 253 83 0 40 chr5 64648590 64648640 -87888619 - L1Md_F2 LINE L1 -11 6571 6524 3 1078 604 205 70 7 chr5 64649036 64649173 -87888086 + B3A SINE B2 1 151 -44 3 1078 279 0 0 0 chr5 64649173 64649204 -87888055 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1078 453 245 137 30 chr5 64649204 64649234 -87888025 + B2_Mm2 SINE B2 152 186 -9 3 1078 247 248 50 38 chr5 64649855 64649964 -87887295 + L2a LINE L2 3253 3373 -53 3 1078 284 355 170 7 chr5 64649988 64650258 -87887001 - L2 LINE L2 -456 2963 2650 3 1078 546 84 0 0 chr5 64651715 64651798 -87885461 + Lx LINE L1 6557 6639 -15 3 1078 3000 48 5 29 chr5 64651967 64652164 -87885095 - L1Md_T LINE L1 0 6582 6394 3 1078 1473 49 55 0 chr5 64652164 64652186 -87885073 - B2_Mm1t SINE B2 0 193 162 3 1078 243 0 0 0 chr5 64652186 64652213 -87885046 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 1078 1473 49 55 0 chr5 64652213 64652373 -87884886 - B2_Mm1t SINE B2 -32 161 2 3 1078 3000 48 5 29 chr5 64652373 64652560 -87884699 - L1Md_T LINE L1 -189 6393 6207 3 1078 468 0 0 0 chr5 64653341 64653393 -87883866 + (TC)n Simple_repeat Simple_repeat 1 52 0 3 1078 605 156 7 123 chr5 64653393 64653539 -87883720 - B1_Mur4 SINE Alu -14 136 8 3 1078 583 256 91 0 chr5 64653708 64653884 -87883375 - MTE2a LTR MaLR -179 200 9 3 1078 561 246 142 0 chr5 64653889 64654072 -87883187 + B3 SINE B2 1 209 -7 3 1078 281 238 12 0 chr5 64655182 64655262 -87881997 + GA-rich Low_complexity Low_complexity 1 81 0 3 1078 182 362 41 41 chr5 64655994 64656115 -87881144 - L2 LINE L2 -1357 2062 1942 3 1078 30 0 0 0 chr5 64656491 64656521 -87880738 + AT_rich Low_complexity Low_complexity 1 30 0 3 1078 441 0 0 0 chr5 64657133 64657182 -87880077 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1078 499 325 42 16 chr5 64657213 64657444 -87879815 - B4A SINE B4 -2 290 52 3 1078 702 281 116 3 chr5 64657465 64657783 -87879476 - L1MB3 LINE L1 -219 5964 5611 3 1078 2619 131 33 0 chr5 64657793 64658190 -87879069 - MTC LTR MaLR -11 410 1 3 1078 281 220 0 0 chr5 64659030 64659089 -87878170 + ID4_ SINE ID 3 61 -22 3 1078 245 307 0 0 chr5 64659034 64659109 -87878150 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 3 1078 345 257 0 0 chr5 64659174 64659244 -87878015 + ID4_ SINE ID 9 78 -5 3 1078 347 160 0 17 chr5 64659352 64659455 -87877804 - B2_Mm2 SINE B2 -12 183 47 3 1078 1250 103 40 0 chr5 64659485 64659660 -87877599 - B2_Mm2 SINE B2 -12 183 2 3 1078 1330 106 11 0 chr5 64660493 64660681 -87876578 + B2_Mm1t SINE B2 2 191 -2 3 1078 198 0 0 0 chr5 64663341 64663363 -87873896 + (CAGG)n Simple_repeat Simple_repeat 3 24 0 3 1078 210 37 0 0 chr5 64664291 64664318 -87872941 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1078 1194 48 0 7 chr5 64664326 64664474 -87872785 - B1_Mus2 SINE Alu 0 147 1 3 1078 280 325 24 0 chr5 64665450 64665533 -87871726 - RSINE1 SINE B4 -77 88 4 3 1078 218 266 12 25 chr5 64666055 64666136 -87871123 + GA-rich Low_complexity Low_complexity 4 83 0 3 1078 303 359 8 0 chr5 64667191 64667319 -87869940 + L1M5 LINE L1 5606 5734 -506 3 1078 252 0 0 0 chr5 64667491 64667519 -87869740 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1078 1349 280 13 0 chr5 64667530 64667908 -87869351 - L1MA4A LINE L1 -368 5935 5553 3 1078 287 307 0 22 chr5 64669414 64669504 -87867755 - PB1D10 SINE Alu -6 111 24 3 1078 450 303 78 36 chr5 64669706 64669898 -87867361 + MER58A DNA MER1_type 19 218 -6 3 1078 238 293 13 0 chr5 64671334 64671409 -87865850 - Charlie9 DNA MER1_type -5 2752 2677 3 1078 259 261 56 11 chr5 64671478 64671567 -87865692 - Charlie9 DNA MER1_type -2658 99 7 3 1078 296 256 32 95 chr5 64672177 64672272 -87864987 - PB1D10 SINE Alu -19 98 10 3 1078 298 299 26 0 chr5 64672205 64672282 -87864977 - ID_B1 SINE B4 -65 159 81 3 1078 191 271 0 40 chr5 64672437 64672487 -87864772 - MIRm SINE MIR -129 147 100 3 1078 2366 137 65 8 chr5 64673788 64674186 -87863073 - MTC LTR MaLR 0 421 1 3 1078 291 174 21 52 chr5 64676679 64676776 -87860483 + (TG)n Simple_repeat Simple_repeat 2 95 0 3 1078 436 258 15 52 chr5 64677647 64677666 -87859593 - ID_B1 SINE B4 -10 214 85 3 1078 638 198 17 0 chr5 64677666 64677782 -87859477 - B1F2 SINE Alu -28 121 4 3 1078 279 253 33 98 chr5 64677700 64677792 -87859467 - MT2B LTR ERVL -361 240 155 3 1078 345 186 0 0 chr5 64678293 64678352 -87858907 - ID4_ SINE ID -10 73 15 3 1078 230 194 145 2 chr5 64679328 64679398 -87857861 - ID4 SINE ID -61 91 13 3 1078 189 0 0 0 chr5 64679975 64679996 -87857263 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 3 1078 431 241 93 14 chr5 64680291 64680430 -87856829 - ID_B1 SINE B4 -7 217 68 3 1078 224 269 0 0 chr5 64680974 64681026 -87856233 - B1F1 SINE Alu -96 53 2 3 1078 210 93 36 36 chr5 64681131 64681187 -87856072 + T-rich Low_complexity Low_complexity 6 61 0 3 1078 222 337 37 37 chr5 64681539 64681551 -87855708 - PB1 SINE Alu -2 125 18 3 1078 422 240 167 0 chr5 64681551 64681647 -87855612 - ID_B1 SINE B4 -14 210 99 3 1078 1094 278 51 55 chr5 64682006 64682494 -87854765 - L1MB8 LINE L1 -9 6169 5684 3 1078 2828 30 39 3 chr5 64682501 64682839 -87854420 + L1_Mus1 LINE L1 6215 6564 -3 3 1078 232 300 25 0 chr5 64682873 64682953 -87854306 + ID4 SINE ID 2 83 0 3 1078 273 330 36 27 chr5 64683259 64683371 -87853888 - MER5A DNA MER1_type 0 189 77 3 1078 4290 87 7 2 chr5 64685033 64685606 -87851653 + MT2B2 LTR ERVL 1 576 -8 3 1078 245 329 0 0 chr5 64685826 64685899 -87851360 - MLT1J LTR MaLR -340 172 100 3 1078 1242 48 0 0 chr5 64686333 64686480 -87850779 + B1_Mus2 SINE Alu 1 147 0 3 1078 241 321 122 9 chr5 64686841 64686948 -87850311 - MIR3 SINE MIR -23 185 67 3 1078 404 250 11 22 chr5 64687192 64687282 -87849977 - B3A SINE B2 -105 93 5 3 1078 187 229 0 0 chr5 64687432 64687467 -87849792 - MIR SINE MIR -62 146 112 3 1078 339 241 73 9 chr5 64688046 64688155 -87849104 + PB1D10 SINE Alu 2 117 0 3 1078 382 237 141 26 chr5 64688440 64688596 -87848663 - L1MB2 LINE L1 -119 6052 5879 3 1078 342 0 0 0 chr5 64688854 64688892 -87848367 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1078 337 235 152 24 chr5 64689167 64689283 -87847976 - PB1D10 SINE Alu -27 121 1 3 1078 246 274 14 14 chr5 64690839 64690913 -87846346 + MLT1A LTR MaLR 3 76 -298 3 1078 425 19 0 18 chr5 64691230 64691285 -87845974 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1078 231 310 139 0 chr5 64691697 64691777 -87845482 + ID4 SINE ID 1 90 -62 3 1078 338 284 116 58 chr5 64691889 64692061 -87845198 - MER5A DNA MER1_type -4 185 4 3 1078 387 0 0 0 chr5 64692874 64692917 -87844342 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 3 1078 287 323 19 66 chr5 64693498 64693604 -87843655 + B3 SINE B2 3 103 -113 3 1078 231 36 0 0 chr5 64693641 64693669 -87843590 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1078 3556 216 50 75 chr5 64694359 64695350 -87841909 - Lx7 LINE L1 0 7696 6730 3 1078 3899 201 55 51 chr5 64695347 64695759 -87841500 - Lx7 LINE L1 -1177 6519 6097 3 1078 4149 129 28 52 chr5 64695759 64696533 -87840726 - RMER6A LTR ERVK 0 756 1 3 1078 17946 192 54 46 chr5 64696533 64696793 -87840466 - Lx7 LINE L1 -1600 6096 5830 3 1078 868 145 65 0 chr5 64696793 64696931 -87840328 - B1_Mur3 SINE Alu 0 149 3 3 1078 17946 154 52 23 chr5 64696931 64698067 -87839192 - Lx7 LINE L1 -51 5829 4671 3 1078 1006 124 23 23 chr5 64698067 64698240 -87839019 - B2_Mm2 SINE B2 -19 176 4 3 1078 17946 154 52 23 chr5 64698240 64700508 -87836751 - Lx7 LINE L1 -1210 4670 2326 3 1078 191 258 121 22 chr5 64701524 64701615 -87835644 + MIR SINE MIR 37 136 -126 3 1078 645 270 6 74 chr5 64701906 64702082 -87835177 - RSINE1 SINE B4 0 165 2 3 1078 573 197 137 27 chr5 64702096 64702242 -87835017 + RSINE1 SINE B4 2 163 -2 3 1078 471 100 0 0 chr5 64702718 64702788 -87834471 + (TTGG)n Simple_repeat Simple_repeat 2 71 0 3 1078 306 0 0 0 chr5 64703659 64703693 -87833566 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1078 2206 163 98 5 chr5 64703695 64704102 -87833157 - Lx7 LINE L1 -419 7277 6833 3 1078 23 33 0 0 chr5 64704115 64704145 -87833114 + AT_rich Low_complexity Low_complexity 1 30 0 3 1078 1118 175 182 9 chr5 64704145 64704447 -87832812 + Lx7 LINE L1 7253 7678 -18 3 1078 36 53 0 0 chr5 64704467 64704524 -87832735 + AT_rich Low_complexity Low_complexity 1 57 0 4 1078 504 229 149 7 chr5 64704524 64704665 -87832594 + RSINE1 SINE B4 3 163 -2 4 1078 776 223 199 79 chr5 64705663 64705980 -87831279 - MTD LTR MaLR 0 419 65 4 1078 210 267 109 22 chr5 64707389 64707481 -87829778 - AmnSINE1 SINE SINE -470 105 6 4 1078 243 0 0 0 chr5 64708226 64708253 -87829006 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1078 445 302 101 0 chr5 64708255 64708394 -87828865 - B3A SINE B2 -31 167 15 4 1078 229 247 136 0 chr5 64708532 64708613 -87828646 + Charlie10 DNA MER1_type 33 124 -2698 4 1078 457 329 17 69 chr5 64708857 64709030 -87828229 + RSINE1 SINE B4 2 165 0 4 1078 1136 206 60 50 chr5 64709526 64709933 -87827326 - BGLII_B LTR ERVK -12 433 1 4 1078 693 243 14 7 chr5 64709937 64710078 -87827181 - B3 SINE B2 0 216 75 4 1078 883 292 61 15 chr5 64710147 64710411 -87826848 + B4A SINE B4 8 283 -9 4 1078 293 155 17 0 chr5 64712588 64712646 -87824613 + CT-rich Low_complexity Low_complexity 3 61 0 4 1078 423 0 0 0 chr5 64713251 64713298 -87823961 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1078 276 288 15 0 chr5 64713374 64713440 -87823819 - MLT1D LTR MaLR 0 505 439 4 1078 410 331 50 0 chr5 64713440 64713561 -87823698 + RSINE1 SINE B4 4 130 -35 4 1078 569 14 14 0 chr5 64713580 64713650 -87823609 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 4 1078 715 262 91 26 chr5 64713651 64713882 -87823377 + Lx7 LINE L1 7100 7345 -351 4 1078 733 135 0 87 chr5 64714188 64714383 -87822876 + CT-rich Low_complexity Low_complexity 3 180 0 4 1078 1197 48 7 0 chr5 64714387 64714534 -87822725 - B1_Mus1 SINE Alu 0 148 1 4 1078 242 310 133 62 chr5 64714663 64714873 -87822386 - MLT1D LTR MaLR -269 236 12 4 1078 526 277 133 55 chr5 64715287 64715558 -87821701 + B4 SINE B4 1 292 0 4 1078 267 103 0 0 chr5 64716800 64716839 -87820420 + (TTA)n Simple_repeat Simple_repeat 2 40 0 4 1078 211 305 89 0 chr5 64716930 64717024 -87820235 - MIR SINE MIR -87 121 12 4 1078 303 241 0 0 chr5 64717066 64717124 -87820135 + L2a LINE L2 3355 3412 -14 4 1078 1028 117 82 16 chr5 64719263 64719276 -87817983 - B2_Mm2 SINE B2 0 195 184 4 1078 231 36 0 0 chr5 64719276 64719304 -87817955 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1078 1028 117 82 16 chr5 64719304 64719472 -87817787 - B2_Mm2 SINE B2 -12 183 2 4 1078 1266 229 19 120 chr5 64719949 64720366 -87816893 + MTE2a LTR MaLR 2 376 -3 4 1078 523 257 201 35 chr5 64720791 64721020 -87816239 - B4A SINE B4 -23 269 3 4 1078 841 244 128 33 chr5 64721711 64722071 -87815188 - Charlie1a DNA MER1_type -24 1431 1038 4 1078 779 178 8 8 chr5 64722076 64722206 -87815053 + B3 SINE B2 1 130 -86 4 1078 180 0 0 0 chr5 64722271 64722291 -87814968 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 4 1078 372 248 76 0 chr5 64722412 64722517 -87814742 + RSINE1 SINE B4 34 146 -19 4 1078 696 263 111 0 chr5 64722683 64722900 -87814359 + MER33 DNA MER1_type 6 246 -78 4 1078 523 250 68 20 chr5 64722931 64723078 -87814181 - RSINE1 SINE B4 -10 155 2 4 1078 602 228 65 32 chr5 64723772 64723926 -87813333 - RSINE1 SINE B4 -4 161 3 4 1078 471 226 0 146 chr5 64724202 64724373 -87812886 + B1F2 SINE Alu 3 148 -1 4 1078 240 308 37 128 chr5 64724751 64724915 -87812344 - LTR86B1 LTR ERVL -160 333 185 4 1078 225 306 53 40 chr5 64724976 64725051 -87812208 - MIR SINE MIR -55 153 77 4 1078 196 229 0 77 chr5 64725090 64725142 -87812117 - MIR SINE MIR -182 80 33 4 1078 299 225 139 58 chr5 64725557 64725694 -87811565 + B1F SINE Alu 1 148 -1 4 1078 643 276 207 0 chr5 64726950 64727182 -87810077 - B4A SINE B4 -12 280 1 4 1078 656 244 68 19 chr5 64727282 64727487 -87809772 - B3 SINE B2 0 216 2 4 1078 742 142 53 30 chr5 64727763 64727894 -87809365 + B1_Mm SINE Alu 2 135 -12 4 1078 297 68 0 0 chr5 64727895 64727939 -87809320 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4 1078 529 267 6 133 chr5 64728937 64729110 -87808149 + RSINE1 SINE B4 1 151 -14 4 1078 210 71 0 0 chr5 64729114 64729142 -87808117 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 4 1078 861 237 10 16 chr5 64729361 64729554 -87807705 + B3A SINE B2 1 192 -6 4 1078 1258 82 0 0 chr5 64730182 64730341 -87806918 + B2_Mm1a SINE B2 2 160 -33 4 1078 423 0 0 0 chr5 64730341 64730388 -87806871 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 4 1078 322 248 168 64 chr5 64731637 64731869 -87805390 - MLT2B3 LTR ERVL -65 652 414 4 1078 1149 121 4 0 chr5 64731909 64732157 -87805102 + (TCC)n Simple_repeat Simple_repeat 1 248 0 4 1078 742 165 24 0 chr5 64732157 64732284 -87804975 - B1_Mur4 SINE Alu -1 149 20 4 1078 276 347 79 15 chr5 64732282 64732484 -87804775 - MLT2B3 LTR ERVL -339 331 117 4 1078 234 0 0 0 chr5 64732608 64732634 -87804625 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 4 1078 299 318 59 55 chr5 64733066 64733319 -87803940 + L1M5 LINE L1 5487 5740 -384 4 1078 745 300 96 8 chr5 64735029 64735268 -87801991 + MTE2b LTR MaLR 1 260 -119 4 1078 365 250 144 29 chr5 64735444 64735609 -87801650 + MTEb LTR MaLR 208 379 0 4 1078 927 176 48 6 chr5 64736079 64736245 -87801014 - B3 SINE B2 -42 174 2 4 1078 21 36 0 0 chr5 64738274 64738302 -87798957 + AT_rich Low_complexity Low_complexity 1 28 0 4 1078 332 322 92 7 chr5 64738715 64738868 -87798391 + L1ME4a LINE L1 5858 6023 -101 4 1078 1670 36 0 0 chr5 64739180 64739372 -87797887 - B2_Mm1a SINE B2 0 193 2 4 1078 30 0 0 0 chr5 64739378 64739408 -87797851 + AT_rich Low_complexity Low_complexity 1 30 0 4 1078 315 0 0 0 chr5 64739895 64739930 -87797329 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1078 320 319 120 7 chr5 64743537 64743679 -87793580 - MLT2E LTR ERVL -468 160 3 4 1078 196 30 0 57 chr5 64744531 64744566 -87792693 + (TCC)n Simple_repeat Simple_repeat 2 34 0 4 1078 348 213 40 0 chr5 64744944 64745019 -87792240 - ID4_ SINE ID -4 79 2 4 1078 676 329 27 8 chr5 64745107 64745367 -87791892 - Lx8 LINE L1 -628 6845 6581 4 1078 243 264 27 14 chr5 64745844 64745917 -87791342 - PB1D10 SINE Alu -20 97 24 4 1078 766 254 22 11 chr5 64745915 64746098 -87791161 + MTE2a LTR MaLR 195 379 0 4 1078 365 228 0 12 chr5 64746403 64746483 -87790776 - B1F SINE Alu 0 149 71 4 1078 788 202 20 161 chr5 64747078 64747332 -87789927 - ID_B1 SINE B4 -2 222 5 4 1078 367 236 135 73 chr5 64747699 64747877 -87789382 + MER5A DNA MER1_type 1 189 0 4 1078 493 242 182 71 chr5 64747963 64748216 -87789043 + B4 SINE B4 2 282 -10 4 1078 189 107 0 0 chr5 64748256 64748284 -87788975 + (CACG)n Simple_repeat Simple_repeat 4 31 0 4 1078 817 238 42 16 chr5 64748304 64748496 -87788763 - B3 SINE B2 -1 215 19 4 1079 457 257 9 28 chr5 64751073 64751181 -87786078 - PB1D10 SINE Alu -10 107 2 4 1079 3208 54 8 3 chr5 64752066 64752458 -87784801 - MTA_Mm LTR MaLR 0 396 3 4 1079 8455 66 7 4 chr5 64752461 64753555 -87783704 - MTA_Mm-int LTR MaLR 0 1098 1 4 1079 485 277 55 35 chr5 64754318 64754520 -87782739 + MER33 DNA MER1_type 88 293 -31 4 1079 434 161 23 0 chr5 64756297 64756384 -87780875 + GA-rich Low_complexity Low_complexity 2 90 0 4 1079 268 272 73 42 chr5 64757272 64757368 -87779891 - MLT1A LTR MaLR -220 154 56 4 1079 464 72 14 0 chr5 64758041 64758110 -87779149 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 4 1079 816 196 174 51 chr5 64758179 64758332 -87778927 + MTEa LTR MaLR 1 181 -198 4 1079 195 42 0 0 chr5 64758332 64758356 -87778903 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 4 1079 816 217 324 33 chr5 64758356 64758510 -87778749 + MTEa LTR MaLR 182 372 -7 4 1079 546 356 102 47 chr5 64758511 64759197 -87778062 - LTR78 LTR ERV1 -62 1242 519 4 1079 283 282 103 52 chr5 64759472 64759588 -87777671 + MIR3 SINE MIR 76 197 -11 4 1079 226 311 48 10 chr5 64759835 64759939 -87777320 + L1M5 LINE L1 5594 5701 -423 4 1079 378 247 0 12 chr5 64760046 64760132 -87777127 + B4 SINE B4 2 86 -206 4 1079 725 238 14 0 chr5 64760147 64760290 -87776969 + B1_Mur2 SINE Alu 5 149 0 4 1079 723 158 0 0 chr5 64760290 64760417 -87776842 + GA-rich Low_complexity Low_complexity 2 128 0 4 1079 485 217 223 49 chr5 64760433 64760617 -87776642 + B3 SINE B2 1 216 0 4 1079 632 289 71 20 chr5 64760620 64760818 -87776441 + B4A SINE B4 85 292 0 4 1079 227 186 23 0 chr5 64760818 64760861 -87776398 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1079 234 367 0 0 chr5 64761118 64761208 -87776051 + L2a LINE L2 3332 3421 -5 4 1079 366 335 73 30 chr5 64761332 64761744 -87775515 + MLT1J LTR MaLR 13 481 -31 4 1079 2196 168 37 27 chr5 64762286 64762495 -87774764 - MTC LTR MaLR -13 408 205 4 1079 207 0 0 0 chr5 64762495 64762518 -87774741 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1079 2196 168 37 27 chr5 64762518 64762712 -87774547 - MTC LTR MaLR -217 204 1 4 1079 730 278 205 26 chr5 64763203 64763506 -87773753 - MLT1A0 LTR MaLR -2 363 7 4 1079 228 370 11 0 chr5 64764308 64764400 -87772859 + MLT1J LTR MaLR 38 130 -382 4 1079 305 276 26 0 chr5 64764461 64764537 -87772722 + MLT1J LTR MaLR 242 319 -193 4 1079 237 65 0 0 chr5 64764787 64764818 -87772441 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 4 1079 584 50 12 0 chr5 64764823 64764903 -87772356 + (TG)n Simple_repeat Simple_repeat 1 81 0 4 1079 719 223 22 0 chr5 64764904 64765043 -87772216 - RSINE1 SINE B4 -22 143 2 4 1079 183 42 0 0 chr5 64765739 64765763 -87771496 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 4 1079 225 0 0 0 chr5 64767034 64767059 -87770200 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1079 339 355 61 44 chr5 64767097 64767277 -87769982 - LTR79 LTR ERVL -344 183 1 4 1079 441 0 0 0 chr5 64767700 64767749 -87769510 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 5 1079 271 306 99 0 chr5 64767856 64767977 -87769282 + L1MA5 LINE L1 5886 6018 -282 5 1079 499 63 0 12 chr5 64768022 64768102 -87769157 + L1Md_F3 LINE L1 6492 6570 -14 5 1079 291 326 72 42 chr5 64768912 64769359 -87767900 - L1M2 LINE L1 -2459 3684 3222 5 1079 226 236 160 16 chr5 64769485 64769609 -87767650 - MIR SINE MIR -114 154 4 5 1079 192 232 157 14 chr5 64769609 64769667 -87767592 - MIRc SINE MIR -80 188 121 5 1079 297 266 128 0 chr5 64771281 64771375 -87765884 + PB1 SINE Alu 9 114 -13 5 1079 223 156 22 22 chr5 64771390 64771436 -87765823 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 5 1079 351 250 31 31 chr5 64771498 64771626 -87765633 - MER2 DNA MER2_type -134 211 84 5 1079 626 0 14 0 chr5 64772245 64772319 -87764940 + (TC)n Simple_repeat Simple_repeat 1 75 0 5 1079 21 0 0 0 chr5 64772780 64772801 -87764458 + GC_rich Low_complexity Low_complexity 1 21 0 5 1079 321 118 0 0 chr5 64773428 64773479 -87763780 + (A)n Simple_repeat Simple_repeat 1 51 0 5 1079 193 336 126 36 chr5 64774159 64774270 -87762989 + MIRm SINE MIR 14 134 -142 5 1079 252 179 0 0 chr5 64774953 64774992 -87762267 - B1F SINE Alu -110 39 1 5 1079 251 337 61 0 chr5 64774997 64775095 -87762164 - MIRb SINE MIR -40 228 125 5 1079 194 222 0 0 chr5 64775068 64775104 -87762155 - MIRm SINE MIR -125 151 116 5 1079 3409 38 5 0 chr5 64775187 64775581 -87761678 - MTA_Mm LTR MaLR 0 396 1 5 1079 330 362 43 0 chr5 64776288 64776426 -87760833 - RSINE1 SINE B4 -19 146 3 5 1079 180 158 0 0 chr5 64776519 64776557 -87760702 + A-rich Low_complexity Low_complexity 3 40 0 5 1079 878 17 246 0 chr5 64776624 64776742 -87760517 - B1_Mus1 SINE Alu 0 148 2 5 1079 859 277 104 8 chr5 64776766 64777017 -87760242 - MTEa LTR MaLR -2 377 103 5 1079 391 320 38 45 chr5 64777225 64777382 -87759877 - ORR1D2 LTR MaLR -214 156 1 5 1079 1020 316 70 6 chr5 64777382 64777690 -87759569 - ORR1D2-int LTR MaLR -53 1527 1199 5 1079 250 229 0 41 chr5 64777945 64778018 -87759241 + A-rich Low_complexity Low_complexity 2 71 0 5 1079 765 278 77 47 chr5 64778018 64778358 -87758901 - Lx7 LINE L1 -318 7378 7029 5 1079 1522 311 78 68 chr5 64778395 64778731 -87758528 - ORR1D2-int LTR MaLR -893 687 336 5 1079 914 153 21 0 chr5 64778731 64778875 -87758384 + B1_Mus2 SINE Alu 1 147 0 5 1079 1522 311 78 68 chr5 64778875 64779218 -87758041 - ORR1D2-int LTR MaLR -1245 335 1 5 1079 242 279 41 83 chr5 64779320 64779441 -87757818 - MTEb LTR MaLR -60 319 204 5 1079 287 281 24 24 chr5 64779614 64779698 -87757561 + B4A SINE B4 50 133 -159 5 1079 1483 184 189 77 chr5 64779708 64780185 -87757074 - RLTR20C LTR ERVK -3 575 1 5 1079 270 347 40 10 chr5 64780199 64780298 -87756961 + B4A SINE B4 191 292 0 5 1079 460 203 181 42 chr5 64782297 64782441 -87754818 + MER5A DNA MER1_type 14 177 -12 5 1079 189 0 0 0 chr5 64782753 64782774 -87754485 + (TGGGGG)n Simple_repeat Simple_repeat 2 22 0 5 1079 181 316 68 54 chr5 64782958 64783105 -87754154 + MIRc SINE MIR 11 159 -109 5 1079 195 42 0 0 chr5 64783949 64783973 -87753286 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 1079 679 148 34 0 chr5 64785166 64785315 -87751944 + (TGGA)n Simple_repeat Simple_repeat 4 157 0 5 1079 192 306 13 89 chr5 64785356 64785435 -87751824 - L2a LINE L2 -20 3406 3334 5 1079 180 295 10 87 chr5 64785471 64785575 -87751684 - L2a LINE L2 -78 3348 3253 5 1079 182 304 22 0 chr5 64785826 64785872 -87751387 + MIRm SINE MIR 212 258 -18 5 1079 459 277 14 80 chr5 64785884 64786096 -87751163 + B3A SINE B2 1 198 0 5 1079 1800 201 94 5 chr5 64786228 64786612 -87750647 - MTD LTR MaLR -1 418 1 5 1079 260 188 0 70 chr5 64787608 64787694 -87749565 + CT-rich Low_complexity Low_complexity 1 80 0 5 1079 497 134 131 0 chr5 64787744 64787857 -87749402 - B3A SINE B2 -41 154 9 5 1079 353 265 7 48 chr5 64787871 64787970 -87749289 - PB1D10 SINE Alu -50 99 1 5 1079 297 0 0 0 chr5 64788863 64788896 -87748363 + (TGG)n Simple_repeat Simple_repeat 1 33 0 5 1079 845 246 44 52 chr5 64790255 64790605 -87746654 + Lx8 LINE L1 6189 6544 -1100 5 1079 731 204 23 9 chr5 64790605 64790772 -87746487 + MTD LTR MaLR 250 402 -17 5 1079 1066 247 72 89 chr5 64790821 64791168 -87746091 + ORR1E LTR MaLR 6 346 -13 5 1079 579 262 14 0 chr5 64791256 64791397 -87745862 - B1F SINE Alu -6 143 1 5 1079 536 313 47 79 chr5 64791748 64792129 -87745130 - MLT1H LTR MaLR -168 381 13 5 1079 282 298 117 77 chr5 64792130 64792326 -87744933 - MIRb SINE MIR -39 229 26 5 1079 243 0 0 0 chr5 64792835 64792862 -87744397 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1079 408 20 0 0 chr5 64792862 64792910 -87744349 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1079 685 269 95 34 chr5 64792939 64793201 -87744058 - B4A SINE B4 -13 279 2 5 1079 347 377 65 30 chr5 64793312 64793542 -87743717 + L3 LINE CR1 3313 3550 -939 5 1079 224 183 210 32 chr5 64793580 64793642 -87743617 + L3 LINE CR1 3534 3606 -883 5 1079 183 295 150 79 chr5 64793779 64793919 -87743340 - MIRc SINE MIR -87 181 32 5 1079 303 152 152 0 chr5 64793946 64794005 -87743254 + ID SINE ID 8 75 -149 5 1079 323 45 0 22 chr5 64794153 64794199 -87743060 + (CAA)n Simple_repeat Simple_repeat 2 46 0 5 1079 237 324 92 9 chr5 64794480 64794589 -87742670 + MIR SINE MIR 76 193 -69 5 1079 506 253 115 25 chr5 64795938 64796181 -87741078 - L1MB8 LINE L1 -292 5886 5622 5 1079 1332 79 22 6 chr5 64796221 64796400 -87740859 + B2_Mm2 SINE B2 1 182 -13 5 1079 14375 78 21 6 chr5 64796408 64799106 -87738153 + L1VL2 LINE L1 247 2988 -627 5 1079 243 0 0 0 chr5 64799316 64799343 -87737916 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1079 937 34 0 0 chr5 64799346 64799463 -87737796 - B1_Mm SINE Alu 0 147 31 5 1079 28 29 0 0 chr5 64799825 64799860 -87737399 + AT_rich Low_complexity Low_complexity 1 35 0 5 1079 252 299 73 18 chr5 64800140 64800249 -87737010 - PB1D10 SINE Alu -1 116 2 5 1079 607 228 103 97 chr5 64800272 64800457 -87736802 + B3A SINE B2 1 186 -9 5 1079 832 224 142 0 chr5 64801478 64801661 -87735598 - B3 SINE B2 -7 209 1 5 1079 549 231 244 68 chr5 64802539 64802818 -87734441 + MTD LTR MaLR 3 330 -89 5 1079 383 167 15 0 chr5 64802846 64802912 -87734347 - MTEa LTR MaLR -311 68 2 5 1079 539 153 270 0 chr5 64803497 64803608 -87733651 + URR1B DNA MER1_type 1 141 -84 5 1079 2260 180 32 12 chr5 64804504 64804909 -87732350 - MTC LTR MaLR -8 413 1 5 1079 710 128 142 47 chr5 64805034 64805182 -87732077 - ORR1D1 LTR MaLR -4 370 209 5 1079 23 33 0 0 chr5 64805313 64805343 -87731916 + AT_rich Low_complexity Low_complexity 1 30 0 5 1079 394 312 117 27 chr5 64805589 64805870 -87731389 - L1M5 LINE L1 -2807 3339 3040 5 1079 513 0 0 0 chr5 64806444 64806501 -87730758 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1079 307 367 56 32 chr5 64806814 64807188 -87730071 - L1MC4a LINE L1 -1977 5905 5523 5 1079 249 33 0 0 chr5 64807243 64807273 -87729986 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5 1079 363 23 0 0 chr5 64807462 64807506 -87729753 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1079 2248 99 12 12 chr5 64807527 64807854 -87729405 - ORR1A2 LTR MaLR 0 327 1 5 1079 4064 197 37 67 chr5 64807854 64809010 -87728249 - ORR1A2-int LTR MaLR 0 1963 359 5 1079 2101 111 14 72 chr5 64809010 64809359 -87727900 + ORR1A4 LTR MaLR 1 329 0 5 1079 4064 222 62 32 chr5 64809359 64809525 -87727734 - ORR1A2-int LTR MaLR -1012 358 195 5 1079 1661 87 17 0 chr5 64809549 64809780 -87727479 - ORR1A2 LTR MaLR 0 327 93 5 1079 235 208 38 0 chr5 64809816 64809869 -87727390 - B2_Mm2 SINE B2 -94 101 47 5 1079 1313 90 11 0 chr5 64809920 64810097 -87727162 - B2_Mm1t SINE B2 -14 179 1 5 1079 733 114 27 12 chr5 64810097 64810227 -87727032 - ORR1A2 LTR MaLR -241 137 1 5 1079 243 232 44 182 chr5 64810227 64810293 -87726966 - ORR1A2-int LTR MaLR -1275 95 43 5 1079 777 11 0 0 chr5 64810293 64810383 -87726876 + (CA)n Simple_repeat Simple_repeat 2 91 0 5 1079 243 232 44 182 chr5 64810383 64810430 -87726829 - ORR1A2-int LTR MaLR -1328 42 1 5 1079 561 241 59 147 chr5 64810433 64810494 -87726765 - ORR1A2 LTR MaLR -7 367 308 5 1079 1647 21 11 0 chr5 64810494 64810680 -87726579 + B2_Mm1t SINE B2 2 189 -4 5 1079 561 241 59 147 chr5 64810680 64810822 -87726437 - ORR1A2 LTR MaLR -67 307 182 5 1079 2812 247 162 56 chr5 64810820 64811853 -87725406 + MTD-int LTR MaLR 113 1254 -4 5 1079 1109 279 72 33 chr5 64811860 64812253 -87725006 + MTD LTR MaLR 5 404 -15 5 1079 287 284 12 24 chr5 64812251 64812334 -87724925 - RSINE1 SINE B4 -81 84 3 5 1079 628 231 124 29 chr5 64812561 64812770 -87724489 + L1MC1 LINE L1 6087 6315 -18 5 1079 333 338 36 65 chr5 64812983 64813151 -87724108 + MIR SINE MIR 35 197 -65 5 1079 384 22 0 0 chr5 64813197 64813242 -87724017 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1079 423 0 0 0 chr5 64813464 64813511 -87723748 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1079 937 250 5 23 chr5 64813511 64813732 -87723527 - ID_B1 SINE B4 -7 217 1 5 1079 312 324 0 0 chr5 64814950 64815021 -87722238 - PB1D10 SINE Alu -15 102 32 5 1079 324 330 150 19 chr5 64815498 64815705 -87721554 - MLT1A0 LTR MaLR -2 363 130 5 1079 431 341 30 26 chr5 64815710 64815981 -87721278 + B4A SINE B4 4 275 -17 5 1079 371 306 44 7 chr5 64816084 64816219 -87721040 - MLT1A0 LTR MaLR -223 142 3 5 1079 715 326 63 95 chr5 64816229 64816660 -87720599 - MLT1A0-int LTR MaLR -55 1525 964 5 1079 498 372 48 28 chr5 64816720 64817074 -87720185 + L2 LINE L2 2403 2763 -656 5 1079 1060 193 5 29 chr5 64817087 64817295 -87719964 + ORR1C2 LTR MaLR 180 382 -2 5 1079 3059 34 2 116 chr5 64817295 64817733 -87719526 + RLTR10 LTR ERVK 1 388 -2 5 1079 17159 27 5 3 chr5 64817745 64819686 -87717573 + RLTR10-int LTR ERVK 41 1984 -3 5 1079 2954 39 2 117 chr5 64819688 64820124 -87717135 + RLTR10 LTR ERVK 1 386 -4 5 1079 279 239 15 0 chr5 64820145 64820212 -87717047 + HAL1 LINE L1 95 162 -2345 5 1079 238 67 22 22 chr5 64820765 64820811 -87716448 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 5 1079 309 224 0 0 chr5 64823974 64824032 -87713227 - ID4 SINE ID -18 65 8 5 1079 584 279 80 84 chr5 64824362 64824673 -87712586 + B4A SINE B4 2 290 -2 5 1079 226 226 111 19 chr5 64824677 64824785 -87712474 + MER112 DNA MER1_type 77 194 -67 6 1079 268 233 26 64 chr5 64824785 64824863 -87712396 - ID4 SINE ID -6 77 3 6 1079 2595 197 25 55 chr5 64824922 64825457 -87711802 + RMER19C LTR ERVK 1 611 0 6 1079 373 396 32 55 chr5 64825826 64826121 -87711138 - MLT1I LTR MaLR 0 411 119 6 1079 1551 204 132 0 chr5 64826121 64826454 -87710805 - MTE2a LTR MaLR -2 377 1 6 1079 373 396 32 55 chr5 64826454 64826505 -87710754 - MLT1I LTR MaLR -293 118 73 6 1079 180 0 0 0 chr5 64826522 64826542 -87710717 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1079 509 144 8 0 chr5 64827655 64827773 -87709486 + CT-rich Low_complexity Low_complexity 1 119 0 6 1079 731 286 39 86 chr5 64827837 64828116 -87709143 - B4A SINE B4 -23 269 4 6 1079 390 278 0 0 chr5 64828992 64829082 -87708177 + L2a LINE L2 3337 3426 0 6 1079 292 405 58 0 chr5 64829317 64829490 -87707769 - LTR33 LTR ERVL 0 515 333 6 1079 524 217 17 42 chr5 64830397 64830517 -87706742 - PB1D10 SINE Alu 0 117 1 6 1079 903 164 14 0 chr5 64830617 64830763 -87706496 + B1_Mus1 SINE Alu 1 148 0 6 1079 200 133 0 43 chr5 64830974 64831021 -87706238 + (CATG)n Simple_repeat Simple_repeat 1 45 0 6 1079 267 133 0 0 chr5 64831012 64831057 -87706202 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1079 221 220 17 17 chr5 64831126 64831186 -87706073 + CT-rich Low_complexity Low_complexity 1 60 0 6 1079 482 258 98 34 chr5 64831186 64831336 -87705923 - ID_B1 SINE B4 -59 233 82 6 1079 189 0 0 0 chr5 64831992 64832013 -87705246 + (TTG)n Simple_repeat Simple_repeat 1 21 0 6 1079 223 261 13 104 chr5 64832013 64832079 -87705180 - B1F SINE Alu -12 137 78 6 1079 609 14 0 0 chr5 64833563 64833633 -87703626 + (GA)n Simple_repeat Simple_repeat 1 70 0 6 1079 808 193 5 14 chr5 64833827 64834042 -87703217 + (TG)n Simple_repeat Simple_repeat 1 212 0 6 1079 3477 25 5 0 chr5 64834042 64834436 -87702823 + MTA_Mm LTR MaLR 1 396 0 6 1079 808 151 0 32 chr5 64834436 64834556 -87702703 + (TG)n Simple_repeat Simple_repeat 2 117 0 6 1079 1201 62 0 0 chr5 64834957 64835102 -87702157 - B1_Mus2 SINE Alu -1 146 2 6 1079 22 0 0 0 chr5 64835103 64835125 -87702134 + AT_rich Low_complexity Low_complexity 1 22 0 6 1079 825 276 14 0 chr5 64835125 64835339 -87701920 - ID_B1 SINE B4 -6 218 2 6 1079 422 230 71 45 chr5 64835663 64835818 -87701441 + MLT1A0 LTR MaLR 1 159 -206 6 1079 440 219 52 0 chr5 64835825 64835921 -87701338 + PB1D7 SINE Alu 18 118 -2 6 1079 629 272 44 0 chr5 64835956 64836114 -87701145 + MLT1A0 LTR MaLR 201 365 0 6 1079 1163 265 149 38 chr5 64836373 64836790 -87700469 - L1ME1 LINE L1 -76 6103 5622 6 1079 2036 136 9 58 chr5 64836790 64837133 -87700126 + ORR1A3 LTR MaLR 1 326 0 6 1079 1163 265 149 38 chr5 64837133 64837428 -87699831 - L1ME1 LINE L1 -558 5621 5313 6 1079 1215 55 0 0 chr5 64837631 64837777 -87699482 + B1_Mus2 SINE Alu 1 146 -1 6 1079 511 257 0 0 chr5 64837812 64837925 -87699334 + PB1D10 SINE Alu 2 114 -3 6 1079 315 282 16 33 chr5 64839423 64839544 -87697715 + GA-rich Low_complexity Low_complexity 1 119 0 6 1079 21 57 0 0 chr5 64839555 64839590 -87697669 + AT_rich Low_complexity Low_complexity 1 35 0 6 1079 418 292 85 21 chr5 64839734 64840129 -87697130 + L1ME1 LINE L1 5011 5434 -745 6 1079 21 36 0 0 chr5 64840449 64840477 -87696782 + AT_rich Low_complexity Low_complexity 1 28 0 6 1079 345 278 39 34 chr5 64840493 64840651 -87696608 + L1ME1 LINE L1 5880 6034 -1751 6 1079 741 267 39 5 chr5 64840797 64841000 -87696259 + B3 SINE B2 2 211 -5 6 1079 420 71 0 0 chr5 64841012 64841068 -87696191 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 1079 1191 103 0 0 chr5 64841068 64841409 -87695850 + (GGAA)n Simple_repeat Simple_repeat 1 341 0 6 1079 222 224 17 0 chr5 64841623 64841681 -87695578 - ID4 SINE ID -22 61 3 6 1079 430 305 49 74 chr5 64841886 64842197 -87695062 - B4 SINE B4 -14 278 8 6 1079 1885 156 20 11 chr5 64842326 64842677 -87694582 - ORR1B1 LTR MaLR 0 394 41 6 1079 937 78 54 0 chr5 64843706 64843872 -87693387 + (GGGA)n Simple_repeat Simple_repeat 3 177 0 6 1079 391 165 24 0 chr5 64843873 64843958 -87693301 + GA-rich Low_complexity Low_complexity 2 88 0 6 1079 215 195 36 24 chr5 64844860 64844944 -87692315 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 6 1079 264 333 0 0 chr5 64844983 64845052 -87692207 - B1_Mur4 SINE Alu -79 71 3 6 1079 219 185 0 0 chr5 64845070 64845106 -87692153 + T-rich Low_complexity Low_complexity 30 65 0 6 1079 1118 89 7 0 chr5 64845106 64845252 -87692007 - B1_Mus2 SINE Alu 0 147 1 6 1079 219 185 0 0 chr5 64845252 64845280 -87691979 + T-rich Low_complexity Low_complexity 2 29 0 6 1079 496 163 12 0 chr5 64845291 64845377 -87691882 - L1M2 LINE L1 -521 5779 5693 6 1079 668 154 16 16 chr5 64845380 64845505 -87691754 - B1_Mur4 SINE Alu -25 125 1 6 1079 443 278 15 8 chr5 64845616 64845750 -87691509 - MTE-int LTR MaLR -1417 163 29 6 1079 309 335 28 11 chr5 64845750 64845928 -87691331 - L1M2 LINE L1 -1246 4897 4717 6 1079 792 239 58 160 chr5 64845964 64846330 -87690929 - L1_Mur3 LINE L1 -1323 4557 4232 6 1079 837 219 67 43 chr5 64846330 64846540 -87690719 + B3 SINE B2 2 216 0 6 1079 792 241 68 140 chr5 64846540 64846714 -87690545 - L1_Mur3 LINE L1 -1649 4231 4093 6 1079 900 314 85 27 chr5 64846711 64847313 -87689946 - L1M2 LINE L1 -2911 3232 2596 6 1079 654 186 163 0 chr5 64847347 64847476 -87689783 + RSINE1 SINE B4 3 152 -13 6 1079 423 248 96 62 chr5 64847560 64847706 -87689553 - RMER1C Other Other -27 1315 1165 6 1079 248 182 109 0 chr5 64847674 64847729 -87689530 - Lx8 LINE L1 -149 7324 7264 6 1079 235 260 13 25 chr5 64848505 64848584 -87688675 + MER5A1 DNA MER1_type 86 163 -3 6 1079 235 211 19 0 chr5 64849788 64849840 -87687419 + PB1 SINE Alu 66 118 -9 6 1079 195 100 0 0 chr5 64850284 64850314 -87686945 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1079 809 216 93 21 chr5 64850612 64850806 -87686453 - B3 SINE B2 -7 209 2 6 1079 400 292 29 12 chr5 64850944 64851114 -87686145 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 6 1079 699 12 0 0 chr5 64851581 64851661 -87685598 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1079 800 294 38 11 chr5 64851714 64851979 -87685280 - B4 SINE B4 -1 291 20 6 1079 390 216 0 0 chr5 64853116 64853241 -87684018 + (CCAA)n Simple_repeat Simple_repeat 1 125 0 6 1079 210 264 79 70 chr5 64853326 64853440 -87683819 + MIRb SINE MIR 91 205 -63 6 1079 21 0 0 0 chr5 64853445 64853466 -87683793 + AT_rich Low_complexity Low_complexity 1 21 0 6 1079 234 276 40 10 chr5 64853963 64854062 -87683197 + G-rich Low_complexity Low_complexity 1 102 0 6 1079 421 271 120 33 chr5 64854536 64854719 -87682540 + MER58A DNA MER1_type 26 224 0 6 1079 934 268 124 21 chr5 64855066 64855486 -87681773 - MLT1C LTR MaLR 0 467 5 6 1079 963 216 42 17 chr5 64855592 64855832 -87681427 + RLTR15 LTR ERVK 1 246 -113 6 1079 868 231 84 20 chr5 64855849 64856052 -87681207 + ID_B1 SINE B4 6 221 -3 6 1079 339 291 9 19 chr5 64856170 64856275 -87680984 + MLT1D LTR MaLR 244 347 -158 6 1079 2207 133 75 0 chr5 64856564 64856939 -87680320 + MTC LTR MaLR 1 403 -18 6 1079 678 25 0 0 chr5 64858422 64858502 -87678757 + (TTC)n Simple_repeat Simple_repeat 3 82 0 6 1079 1026 109 14 7 chr5 64858801 64858948 -87678311 + B1_Mus1 SINE Alu 1 148 0 6 1079 250 270 0 0 chr5 64859635 64859698 -87677561 - tRNA-Ala-GCY_ tRNA tRNA -10 65 3 6 1079 633 103 0 30 chr5 64860260 64860273 -87676986 - B1_Mur4 SINE Alu -3 147 137 6 1079 261 0 0 0 chr5 64860273 64860302 -87676957 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 6 1079 633 103 0 30 chr5 64860302 64860388 -87676871 - B1_Mur4 SINE Alu -14 136 51 6 1079 280 229 98 62 chr5 64860323 64860435 -87676824 - MT2B LTR ERVL -337 264 149 6 1079 451 290 62 17 chr5 64860864 64861043 -87676216 - MIR SINE MIR -34 228 42 6 1079 360 0 0 0 chr5 64861451 64861491 -87675768 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1079 311 289 151 27 chr5 64861494 64861640 -87675619 - B3A SINE B2 -34 164 1 6 1079 229 137 19 56 chr5 64861883 64861937 -87675322 + RLTR11A LTR ERVK 125 176 -352 6 1079 203 273 32 74 chr5 64862296 64862336 -87674923 + MIR SINE MIR 56 89 -173 6 1079 2312 107 113 0 chr5 64862336 64862690 -87674569 - ORR1B1 LTR MaLR 0 394 1 6 1079 203 273 32 74 chr5 64862690 64862744 -87674515 + MIR SINE MIR 90 146 -116 6 1079 192 346 61 67 chr5 64863814 64863978 -87673281 - MIRb SINE MIR -84 184 22 6 1079 252 247 61 12 chr5 64864627 64864709 -87672550 + B1F1 SINE Alu 2 87 -62 6 1079 22 0 0 0 chr5 64864824 64864846 -87672413 + AT_rich Low_complexity Low_complexity 1 22 0 6 1079 273 294 136 38 chr5 64864923 64865107 -87672152 - LTR81C LTR ERV1? -7 1146 945 6 1079 23 0 0 0 chr5 64865131 64865154 -87672105 + AT_rich Low_complexity Low_complexity 1 23 0 6 1079 226 378 0 40 chr5 64865503 64865627 -87671632 - MamGypLTR2 LTR Gypsy -781 408 290 6 1079 389 180 169 0 chr5 64865693 64865782 -87671477 - B1_Mur1 SINE Alu -10 139 36 6 1079 348 282 62 18 chr5 64866639 64866751 -87670508 - MTE2b LTR MaLR -224 155 39 6 1079 520 211 11 0 chr5 64866730 64866825 -87670434 - MTE2b LTR MaLR -281 98 3 6 1079 1988 167 76 20 chr5 64867396 64867793 -87669466 + MTD LTR MaLR 1 419 0 6 1079 198 0 0 0 chr5 64867844 64867866 -87669393 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1079 396 0 0 0 chr5 64868791 64868835 -87668424 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 6 1079 225 0 0 0 chr5 64868844 64868869 -87668390 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1079 532 316 0 51 chr5 64868879 64869036 -87668223 - RSINE1 SINE B4 -12 153 5 6 1079 22 0 0 0 chr5 64869407 64869429 -87667830 + AT_rich Low_complexity Low_complexity 1 22 0 6 1079 1177 154 33 19 chr5 64871067 64871279 -87665980 - URR1B DNA MER1_type -10 215 1 7 1079 4376 121 45 22 chr5 64871409 64872145 -87665114 - RMER6A LTR ERVK 0 756 4 7 1079 293 359 85 21 chr5 64872148 64872210 -87665049 + L2 LINE L2 2034 2094 -1325 7 1079 1184 187 205 6 chr5 64872210 64872522 -87664737 + ORR1D1 LTR MaLR 1 374 0 7 1079 293 359 85 21 chr5 64872522 64872695 -87664564 + L2 LINE L2 2095 2283 -1136 7 1079 402 21 0 0 chr5 64872755 64872802 -87664457 + (TATG)n Simple_repeat Simple_repeat 1 47 0 7 1079 788 260 137 0 chr5 64872839 64873066 -87664193 - B4A SINE B4 -33 259 2 7 1079 541 224 188 11 chr5 64873218 64873394 -87663865 - B3A SINE B2 -12 204 1 7 1079 499 281 58 7 chr5 64874323 64874477 -87662782 + MLT1F LTR MaLR 1 162 -386 7 1079 399 312 134 19 chr5 64874657 64874814 -87662445 + MLT1F LTR MaLR 286 460 -88 7 1079 964 327 156 37 chr5 64874995 64875991 -87661268 + MLT1F-int LTR MaLR 156 1269 -220 7 1079 548 278 76 85 chr5 64876289 64876525 -87660734 + MLT1F LTR MaLR 15 248 -300 7 1079 238 260 77 39 chr5 64876533 64876637 -87660622 + MLT1F LTR MaLR 462 569 0 7 1079 233 262 49 12 chr5 64876697 64876778 -87660481 - MTEb LTR MaLR -2 377 294 7 1079 542 121 0 11 chr5 64876812 64876904 -87660355 + B1_Mur4 SINE Alu 60 150 0 7 1079 518 269 23 15 chr5 64876963 64877189 -87660070 + L1M3 LINE L1 2935 3156 -2987 7 1079 467 309 83 22 chr5 64877459 64877687 -87659572 + RMER15 LTR ERVL 319 560 -15 7 1079 565 290 83 24 chr5 64877698 64877988 -87659271 + L1M3 LINE L1 3174 3480 -2660 7 1079 835 168 249 0 chr5 64879714 64879887 -87657372 + B3 SINE B2 1 216 0 7 1079 216 194 48 0 chr5 64879938 64880000 -87657259 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 1079 330 26 0 0 chr5 64880263 64880302 -87656957 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1079 423 0 0 0 chr5 64880302 64880348 -87656911 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1079 403 246 27 54 chr5 64880364 64880558 -87656701 + B4 SINE B4 44 290 -2 7 1080 429 79 0 16 chr5 64880842 64880906 -87656353 + B2_Mm2 SINE B2 2 64 -131 7 1080 218 272 36 24 chr5 64880906 64880925 -87656334 + B4A SINE B4 2 85 -207 7 1080 488 244 63 0 chr5 64881901 64882028 -87655231 + RSINE1 SINE B4 2 136 -29 7 1080 378 0 0 0 chr5 64882210 64882252 -87655007 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1080 366 180 301 18 chr5 64882912 64883025 -87654234 - B1_Mm SINE Alu -1 146 2 7 1080 444 215 93 0 chr5 64883404 64883511 -87653748 + ID_B1 SINE B4 104 220 -4 7 1080 929 191 65 32 chr5 64884071 64884288 -87652971 - URR1A DNA MER1_type -2 224 1 7 1080 488 299 0 55 chr5 64884583 64884746 -87652513 + RSINE1 SINE B4 12 165 0 7 1080 704 61 10 0 chr5 64884750 64884848 -87652411 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 1080 1151 51 0 0 chr5 64885170 64885308 -87651951 + B1_Mm SINE Alu 1 138 -9 7 1080 255 122 345 52 chr5 64885486 64885599 -87651660 - B2_Mm2 SINE B2 -3 192 47 7 1080 1080 121 72 0 chr5 64885612 64885778 -87651481 - B2_Mm1t SINE B2 -14 179 2 7 1080 518 183 0 0 chr5 64885782 64885875 -87651384 - ID_B1 SINE B4 0 224 132 7 1080 494 304 14 0 chr5 64885964 64886102 -87651157 - B1F2 SINE Alu -8 141 2 7 1080 312 300 16 86 chr5 64886163 64886349 -87650910 + MER65-int LTR ERV1 4605 4777 -94 7 1080 395 258 20 40 chr5 64886457 64886558 -87650701 + PB1D10 SINE Alu 11 109 -8 7 1080 1148 75 0 13 chr5 64886868 64887017 -87650242 - B1_Mus2 SINE Alu 0 147 1 7 1080 670 271 40 36 chr5 64887842 64888064 -87649195 + ID_B1 SINE B4 2 224 0 7 1080 466 305 77 48 chr5 64889873 64890238 -87647021 + L1MC5 LINE L1 7302 7677 -284 7 1080 2501 172 62 64 chr5 64890238 64890772 -87646487 - MT2A LTR ERVL 0 533 1 7 1080 466 305 77 48 chr5 64890772 64890888 -87646371 + L1MC5 LINE L1 7678 7796 -165 7 1080 393 22 0 0 chr5 64890970 64891016 -87646243 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 7 1080 764 273 32 14 chr5 64891019 64891238 -87646021 - ID_B1 SINE B4 -1 223 1 7 1080 187 277 0 0 chr5 64891398 64891445 -87645814 + MIRb SINE MIR 216 262 -6 7 1080 360 0 0 0 chr5 64892977 64893017 -87644242 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1080 262 321 37 0 chr5 64893756 64893837 -87643422 + B1F SINE Alu 1 84 -65 7 1080 544 189 9 9 chr5 64893849 64893956 -87643303 + B1_Mur2 SINE Alu 41 147 -2 7 1080 236 146 0 40 chr5 64893980 64894030 -87643229 - MLT1A1 LTR MaLR -4 404 357 7 1080 743 188 0 15 chr5 64894037 64894172 -87643087 - B1_Mus1 SINE Alu -11 137 5 7 1080 294 279 206 51 chr5 64894658 64894911 -87642348 + MLT1B LTR MaLR 91 382 -8 7 1080 27 0 0 0 chr5 64895570 64895597 -87641662 + AT_rich Low_complexity Low_complexity 1 27 0 7 1080 342 0 0 0 chr5 64895624 64895662 -87641597 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1080 459 0 0 0 chr5 64895930 64895981 -87641278 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1080 201 74 0 0 chr5 64896916 64896943 -87640316 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 7 1080 264 307 0 13 chr5 64897100 64897176 -87640083 + GA-rich Low_complexity Low_complexity 1 75 0 7 1080 784 189 0 40 chr5 64898225 64898374 -87638885 + B1_Mur4 SINE Alu 2 144 -6 7 1080 246 174 0 0 chr5 64898383 64898429 -87638830 + GA-rich Low_complexity Low_complexity 3 48 0 7 1080 893 244 122 47 chr5 64898600 64898944 -87638315 + MTEa LTR MaLR 3 372 -7 7 1080 193 281 15 30 chr5 64899369 64899435 -87637824 + MER5A DNA MER1_type 119 183 -6 7 1080 1003 117 12 0 chr5 64900427 64900598 -87636661 + (TCC)n Simple_repeat Simple_repeat 2 174 0 7 1080 761 281 32 0 chr5 64900619 64900804 -87636455 - ID_B1 SINE B4 -33 191 1 7 1080 644 225 128 41 chr5 64901309 64901504 -87635755 + ID_B1 SINE B4 12 223 -1 7 1080 300 27 0 0 chr5 64902299 64902336 -87634923 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 7 1080 226 298 66 58 chr5 64902692 64902813 -87634446 - MIRb SINE MIR -143 125 4 7 1080 1356 94 16 10 chr5 64903079 64903272 -87633987 + B2_Mm2 SINE B2 2 195 0 7 1080 399 350 113 12 chr5 64903330 64903587 -87633672 - MLT1J LTR MaLR -127 385 103 7 1080 237 287 40 50 chr5 64903675 64903774 -87633485 - MIRb SINE MIR -74 194 97 7 1080 256 269 10 51 chr5 64904640 64904738 -87632521 + CT-rich Low_complexity Low_complexity 6 99 0 7 1080 25 0 0 0 chr5 64905266 64905291 -87631968 + AT_rich Low_complexity Low_complexity 1 25 0 7 1080 1061 283 80 67 chr5 64905335 64905976 -87631283 - Lx9 LINE L1 -7 7637 6989 7 1080 1449 79 0 16 chr5 64906048 64906240 -87631019 - B2_Mm2 SINE B2 -6 189 1 7 1080 350 250 0 42 chr5 64906695 64906791 -87630468 + PB1D10 SINE Alu 25 116 -1 7 1080 323 323 158 25 chr5 64907320 64907759 -87629500 - LTR50 LTR ERVL -178 617 23 7 1080 470 139 12 0 chr5 64907977 64908063 -87629196 + GA-rich Low_complexity Low_complexity 1 87 0 7 1080 323 110 0 68 chr5 64908919 64909007 -87628252 + (TAA)n Simple_repeat Simple_repeat 3 84 0 7 1080 411 21 0 0 chr5 64909507 64909555 -87627704 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1080 751 140 29 0 chr5 64909599 64909770 -87627489 + (TA)n Simple_repeat Simple_repeat 1 176 0 7 1080 187 282 78 71 chr5 64909866 64910007 -87627252 - L2 LINE L2 -1760 1659 1518 7 1080 245 53 0 50 chr5 64910058 64910098 -87627161 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 7 1080 880 231 62 0 chr5 64910120 64910328 -87626931 - ID_B1 SINE B4 0 224 4 7 1080 505 291 37 42 chr5 64910857 64911072 -87626187 - B3 SINE B2 -2 214 1 7 1080 239 252 78 35 chr5 64911361 64911476 -87625783 + PB1D9 SINE Alu 1 120 0 7 1080 2969 136 17 45 chr5 64911930 64912468 -87624791 - RLTR28 LTR ERVL -1 523 1 7 1080 207 0 0 0 chr5 64913074 64913097 -87624162 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1080 304 138 12 48 chr5 64913594 64913678 -87623581 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1080 793 157 0 27 chr5 64913689 64913872 -87623387 + (CA)n Simple_repeat Simple_repeat 2 179 0 7 1080 316 326 102 0 chr5 64914355 64914591 -87622668 + L1M5 LINE L1 3226 3485 -2661 7 1080 516 295 0 21 chr5 64914595 64914737 -87622522 + RSINE1 SINE B4 2 140 -25 7 1080 254 277 15 11 chr5 64914753 64914843 -87622416 + L1M5 LINE L1 3475 3562 -2584 7 1080 883 177 0 0 chr5 64914974 64915121 -87622138 + B1_Mur1 SINE Alu 2 148 -1 7 1080 343 310 93 42 chr5 64915153 64915271 -87621988 - B1F1 SINE Alu -24 125 2 7 1080 586 302 6 6 chr5 64915400 64915560 -87621699 + B3A SINE B2 1 160 -38 7 1080 238 248 125 29 chr5 64915602 64915706 -87621553 + L1M5 LINE L1 3836 3949 -2197 7 1080 344 261 33 0 chr5 64915995 64916087 -87621172 + ID_B1 SINE B4 130 224 0 7 1080 249 33 0 0 chr5 64916141 64916171 -87621088 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1080 418 271 193 44 chr5 64916230 64916300 -87620959 - B4A SINE B4 -20 272 207 7 1080 504 0 0 0 chr5 64916300 64916356 -87620903 + (TC)n Simple_repeat Simple_repeat 1 56 0 7 1080 418 271 193 44 chr5 64916356 64916513 -87620746 - B4A SINE B4 -86 206 13 7 1080 1485 188 130 110 chr5 64917576 64918103 -87619156 + RMER19B LTR ERVK 1 714 -188 7 1080 601 268 128 28 chr5 64918337 64918587 -87618672 + B4A SINE B4 2 276 -16 7 1080 360 0 0 0 chr5 64918612 64918652 -87618607 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1080 313 351 68 36 chr5 64918955 64919147 -87618112 + LTR16E2 LTR ERVL 369 566 -2 7 1080 21 36 0 0 chr5 64919249 64919277 -87617982 + AT_rich Low_complexity Low_complexity 1 28 0 7 1080 257 226 16 0 chr5 64919383 64919445 -87617814 - Tigger16a DNA Tigger -33 900 838 7 1080 326 260 8 60 chr5 64919763 64919876 -87617383 + MLT1C LTR MaLR 60 175 -215 7 1080 513 0 0 0 chr5 64919876 64919933 -87617326 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1080 307 292 65 130 chr5 64919933 64920173 -87617086 + MLT1C LTR MaLR 176 390 0 7 1080 1689 198 20 20 chr5 64920502 64920848 -87616411 + ORR1A4 LTR MaLR 9 354 -40 7 1080 9852 138 16 84 chr5 64920838 64922896 -87614363 + ORR1A4-int LTR MaLR 46 1963 0 7 1080 1887 125 0 154 chr5 64922896 64923285 -87613974 + ORR1A4 LTR MaLR 1 329 0 7 1080 451 330 93 34 chr5 64923336 64923540 -87613719 + B4A SINE B4 75 290 -2 7 1080 3884 105 56 2 chr5 64924648 64925202 -87612057 - MT2B2 LTR ERVL 0 584 1 8 1080 1406 229 33 52 chr5 64925227 64925710 -87611549 + RLTR20A LTR ERVK 67 540 -1 8 1080 377 318 137 30 chr5 64925714 64925977 -87611282 - MER97c DNA MER1_type? -628 462 172 8 1080 504 269 0 30 chr5 64925981 64926115 -87611144 - B1F SINE Alu -10 139 10 8 1080 303 28 0 0 chr5 64926124 64926160 -87611099 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1080 585 240 222 18 chr5 64926259 64926607 -87610652 + MTD LTR MaLR 1 405 -14 8 1080 498 231 104 7 chr5 64927196 64927331 -87609928 - RSINE1 SINE B4 -17 148 1 8 1080 246 224 17 17 chr5 64928829 64928888 -87608371 + CT-rich Low_complexity Low_complexity 1 59 0 8 1080 214 277 0 186 chr5 64928888 64928990 -87608269 - PB1 SINE Alu -7 120 38 8 1080 249 261 76 59 chr5 64929791 64929909 -87607350 - MIRb SINE MIR -64 204 85 8 1080 294 29 0 0 chr5 64930045 64930080 -87607179 + (TTG)n Simple_repeat Simple_repeat 2 36 0 8 1080 215 298 0 0 chr5 64930083 64930130 -87607129 - ID4_ SINE ID -16 67 21 8 1080 564 279 12 47 chr5 64930252 64930421 -87606838 - RSINE1 SINE B4 0 165 3 8 1080 286 340 55 61 chr5 64930436 64930599 -87606660 - B4A SINE B4 -129 163 2 8 1080 230 333 84 19 chr5 64931272 64931379 -87605880 - MIRc SINE MIR -39 229 116 8 1080 698 293 48 46 chr5 64931976 64932336 -87604923 - MTE2a LTR MaLR -54 365 1 8 1080 231 167 0 0 chr5 64932510 64932552 -87604707 + CT-rich Low_complexity Low_complexity 3 44 0 8 1080 512 243 9 0 chr5 64933476 64933583 -87603676 + MTEa LTR MaLR 8 115 -264 8 1080 6087 81 26 14 chr5 64933585 64935172 -87602087 + L1VL2 LINE L1 177 1790 -1825 8 1080 3214 80 37 116 chr5 64935172 64935735 -87601524 - MURVY-LTR LTR ERV1 0 519 1 8 1080 6058 83 19 15 chr5 64935735 64935775 -87601484 + L1VL2 LINE L1 1791 1826 -1789 8 1080 246 303 0 0 chr5 64935916 64936005 -87601254 - PB1D10 SINE Alu -2 115 27 8 1080 38857 14 1 0 chr5 64936094 64941430 -87595829 + L1Md_A LINE L1 244 5586 -297 8 1080 8865 20 0 0 chr5 64941430 64942426 -87594833 + L1Md_A LINE L1 5587 6582 0 8 1080 1048 250 60 18 chr5 64942983 64943264 -87593995 + MTEa LTR MaLR 87 379 0 8 1080 590 311 49 5 chr5 64943410 64943594 -87593665 + B4A SINE B4 4 195 -97 8 1080 193 306 172 10 chr5 64943820 64943919 -87593340 + MIRc SINE MIR 19 133 -135 8 1080 797 289 96 60 chr5 64944130 64944495 -87592764 + MTE2b LTR MaLR 2 379 0 8 1080 354 319 42 0 chr5 64944526 64944645 -87592614 + LTR16A LTR ERVL 230 353 -98 8 1080 894 132 78 18 chr5 64945416 64945689 -87591570 + ORR1A4 LTR MaLR 1 360 -14 8 1080 241 347 106 14 chr5 64946187 64946462 -87590797 + L2a LINE L2 3126 3425 -1 8 1080 234 0 0 0 chr5 64946509 64946535 -87590724 + (TA)n Simple_repeat Simple_repeat 2 27 0 8 1080 432 179 13 0 chr5 64946798 64946876 -87590383 + ID4 SINE ID 2 80 -3 8 1080 22 0 0 0 chr5 64946973 64946995 -87590264 + AT_rich Low_complexity Low_complexity 1 22 0 8 1080 442 276 41 87 chr5 64947055 64947273 -87589986 - MER3 DNA MER1_type -1 208 1 8 1080 241 366 0 0 chr5 64947502 64947584 -87589675 - Tigger5 DNA MER2_type -2 2404 2323 8 1080 238 279 16 0 chr5 64947752 64947813 -87589446 - Tigger5 DNA MER2_type -2342 64 3 8 1080 260 311 172 71 chr5 64948146 64948513 -87588746 + LTR81B LTR ERV1? 981 1384 -9 8 1080 615 214 13 73 chr5 64948562 64948713 -87588546 + B1_Mur1 SINE Alu 1 142 -7 8 1080 2865 26 45 6 chr5 64949199 64949552 -87587707 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1080 55043 33 16 3 chr5 64949552 64955948 -87581311 - IAPEz-int LTR ERVK 0 6481 8 8 1080 2865 26 45 6 chr5 64955948 64956301 -87580958 - IAPLTR1_Mm LTR ERVK 0 367 1 8 1080 748 210 71 35 chr5 64956337 64956653 -87580606 - RMER19B LTR ERVK -261 350 1 8 1080 636 227 106 0 chr5 64956950 64957082 -87580177 - RSINE1 SINE B4 -17 148 3 8 1080 765 267 14 19 chr5 64957089 64957299 -87579960 - ID_B1 SINE B4 -6 218 10 8 1080 258 301 0 24 chr5 64957224 64957309 -87579950 - BC1_Mm scRNA scRNA -69 83 1 8 1080 321 259 11 148 chr5 64957814 64957963 -87579296 + MLT1F2 LTR MaLR 10 149 -411 8 1080 225 326 23 0 chr5 64958517 64958603 -87578656 + L1M5 LINE L1 5598 5685 -439 8 1080 505 238 166 25 chr5 64959623 64959864 -87577395 + ORR1E LTR MaLR 43 317 -42 8 1080 614 37 12 0 chr5 64959864 64959945 -87577314 + (TTTC)n Simple_repeat Simple_repeat 4 85 0 8 1080 3770 123 36 21 chr5 64959968 64960573 -87576686 - Lx LINE L1 0 6654 6041 8 1080 270 262 12 36 chr5 64960797 64960880 -87576379 - LTR40b LTR ERVL -59 403 323 8 1080 385 315 94 29 chr5 64960914 64961084 -87576175 - MTEa LTR MaLR -4 375 195 8 1080 768 239 5 53 chr5 64961191 64961381 -87575878 - B3A SINE B2 -16 182 2 8 1080 310 266 10 41 chr5 64961471 64961569 -87575690 - MTEa LTR MaLR -281 98 4 8 1080 243 338 107 7 chr5 64961698 64961762 -87575497 - LTR40b LTR ERVL -362 157 81 8 1080 1141 174 27 9 chr5 64961762 64961983 -87575276 - URR1B DNA MER1_type 0 225 1 8 1080 243 338 107 7 chr5 64961983 64962058 -87575201 - LTR40b LTR ERVL -439 80 4 8 1080 2484 122 25 50 chr5 64962213 64962617 -87574642 + ORR1B1 LTR MaLR 1 394 0 8 1080 392 311 43 22 chr5 64962979 64963117 -87574142 - RSINE1 SINE B4 -22 143 3 8 1080 312 102 0 0 chr5 64963471 64963520 -87573739 + (TGGA)n Simple_repeat Simple_repeat 2 50 0 8 1080 11101 26 0 1 chr5 64963590 64965540 -87571719 - L1Md_A LINE L1 -11 6571 4623 8 1080 201 39 0 0 chr5 64965926 64965952 -87571307 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 8 1080 234 368 45 32 chr5 64965956 64966113 -87571146 - MIR SINE MIR -64 198 40 8 1080 22 0 0 0 chr5 64966493 64966515 -87570744 + AT_rich Low_complexity Low_complexity 1 22 0 8 1080 449 246 130 77 chr5 64966568 64966775 -87570484 + B4A SINE B4 25 242 -50 8 1080 389 36 18 0 chr5 64966798 64966853 -87570406 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1080 224 330 43 0 chr5 64967472 64967566 -87569693 + MIR SINE MIR 33 130 -132 8 1080 354 107 0 0 chr5 64969026 64969082 -87568177 + (TGAA)n Simple_repeat Simple_repeat 1 56 0 8 1080 1062 253 14 35 chr5 64969831 64970114 -87567145 + B4A SINE B4 1 277 -15 8 1080 279 0 0 0 chr5 64970126 64970157 -87567102 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1080 402 227 20 20 chr5 64970225 64970324 -87566935 + PB1D10 SINE Alu 17 115 -2 8 1080 527 162 270 0 chr5 64971834 64971945 -87565314 + B1_Mur4 SINE Alu 3 143 -7 8 1080 220 0 86 0 chr5 64971949 64971984 -87565275 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 8 1080 21 0 0 0 chr5 64972414 64972435 -87564824 + AT_rich Low_complexity Low_complexity 1 21 0 8 1080 188 341 101 32 chr5 64972444 64972632 -87564627 - MIR SINE MIR -21 241 41 8 1080 905 273 30 44 chr5 64973929 64974224 -87563035 - B4A SINE B4 0 292 2 8 1080 313 293 12 0 chr5 64974571 64974653 -87562606 - MIRb SINE MIR -150 118 36 8 1080 208 191 21 21 chr5 64974653 64974701 -87562558 + GA-rich Low_complexity Low_complexity 2 49 0 8 1080 390 217 0 0 chr5 64975259 64975374 -87561885 + (CA)n Simple_repeat Simple_repeat 2 116 0 8 1080 627 71 0 0 chr5 64975777 64975862 -87561397 + (GA)n Simple_repeat Simple_repeat 2 86 0 8 1080 591 230 90 35 chr5 64976702 64976846 -87560413 - MER5B DNA MER1_type -25 153 2 8 1080 736 209 14 0 chr5 64977133 64977272 -87559987 + B3 SINE B2 1 141 -75 8 1080 3866 161 70 20 chr5 64977285 64977864 -87559395 + RMER1A Other Other 291 909 -121 8 1080 225 0 0 0 chr5 64977864 64977889 -87559370 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 8 1080 3866 161 70 20 chr5 64977889 64978014 -87559245 + RMER1A Other Other 910 1030 0 8 1080 630 340 58 25 chr5 64978061 64978339 -87558920 + MER44B DNA MER2_type 4 290 -260 8 1080 611 275 75 0 chr5 64978294 64978494 -87558765 - B3 SINE B2 0 216 2 8 1080 210 244 0 0 chr5 64978548 64978589 -87558670 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 8 1080 804 255 28 9 chr5 64978589 64978807 -87558452 - ID_B1 SINE B4 0 224 3 8 1080 188 250 184 0 chr5 64979314 64979390 -87557869 + MIR SINE MIR 94 183 -79 8 1080 190 267 117 0 chr5 64979555 64979615 -87557644 - MIRm SINE MIR -1 275 209 8 1080 280 239 10 102 chr5 64979887 64979985 -87557274 - L1M2 LINE L1 -427 5864 5776 8 1080 459 215 0 0 chr5 64979985 64980106 -87557153 + (CA)n Simple_repeat Simple_repeat 2 122 0 8 1080 801 231 156 8 chr5 64980106 64980180 -87557079 - L1M2 LINE L1 -532 5780 5704 8 1080 1002 44 82 0 chr5 64980180 64980315 -87556944 + B1_Mus2 SINE Alu 2 147 0 8 1080 1197 103 32 26 chr5 64980318 64980470 -87556789 + B2_Mm2 SINE B2 2 157 -38 8 1080 351 60 0 0 chr5 64980470 64980520 -87556739 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 8 1080 1197 103 32 26 chr5 64980520 64980556 -87556703 + B2_Mm2 SINE B2 158 191 -4 8 1080 801 231 156 8 chr5 64980556 64980734 -87556525 - L1M2 LINE L1 -609 5703 5495 8 1080 445 290 19 3 chr5 64980778 64980960 -87556299 - L1ME1 LINE L1 -1136 5872 5683 8 1080 355 322 22 11 chr5 64981006 64981188 -87556071 - L1ME1 LINE L1 -730 5714 5531 8 1080 1130 257 4 4 chr5 64981202 64981456 -87555803 - MTEa-int LTR MaLR -1319 261 8 8 1080 718 312 118 9 chr5 64981467 64981806 -87555453 - MTEa LTR MaLR -3 376 1 8 1080 386 282 68 34 chr5 64981920 64982067 -87555192 - L1ME1 LINE L1 -1243 4903 4752 8 1080 574 347 118 60 chr5 64982085 64982566 -87554693 - MLT1F2 LTR MaLR -5 543 35 8 1080 240 244 64 133 chr5 64984073 64984276 -87552983 - L1MB4 LINE L1 -104 6079 5890 8 1080 336 339 39 0 chr5 64984379 64984506 -87552753 - B1F SINE Alu -16 133 2 8 1080 421 302 24 21 chr5 64984509 64984654 -87552605 - L1MB4 LINE L1 -485 5827 5663 8 1080 653 172 43 0 chr5 64984657 64984889 -87552370 + (TAGA)n Simple_repeat Simple_repeat 1 241 0 8 1080 231 152 0 0 chr5 64984890 64984936 -87552323 + (ATATG)n Simple_repeat Simple_repeat 3 48 0 8 1080 363 232 12 29 chr5 64984940 64985063 -87552196 - L1MB4 LINE L1 -539 5639 5485 8 1080 1138 274 54 40 chr5 64985124 64985553 -87551706 + MLT1C LTR MaLR 1 435 -32 8 1080 840 258 88 12 chr5 64985608 64985859 -87551400 - B4A SINE B4 -22 270 1 8 1080 224 100 25 0 chr5 64987698 64987738 -87549521 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1080 185 41 122 0 chr5 64988054 64988103 -87549156 + T-rich Low_complexity Low_complexity 3 57 0 8 1080 3182 68 0 17 chr5 64988968 64989375 -87547884 + MTB LTR MaLR 1 400 0 8 1080 1318 147 0 100 chr5 64989533 64989783 -87547476 + URR1B DNA MER1_type 1 225 0 8 1080 216 0 0 0 chr5 64990408 64990432 -87546827 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1080 202 221 240 10 chr5 64990830 64990926 -87546333 + MIR3 SINE MIR 73 190 -18 9 1080 824 197 82 10 chr5 64992236 64992431 -87544828 + B3 SINE B2 8 216 0 9 1080 206 32 32 0 chr5 64993421 64993452 -87543807 + (TTG)n Simple_repeat Simple_repeat 2 33 0 9 1080 237 65 0 0 chr5 64993477 64993508 -87543751 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1080 261 0 0 0 chr5 64993604 64993633 -87543626 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1080 284 200 0 0 chr5 64993654 64993704 -87543555 - B4 SINE B4 -15 277 228 9 1080 246 32 0 0 chr5 64993732 64993763 -87543496 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 9 1080 472 294 24 63 chr5 64993792 64994046 -87543213 - B4A SINE B4 -48 244 1 9 1080 550 257 76 93 chr5 64994046 64994280 -87542979 - B4 SINE B4 -62 230 1 9 1080 384 198 96 32 chr5 64994700 64994825 -87542434 - B3 SINE B2 0 216 84 9 1080 317 286 11 11 chr5 64995638 64995730 -87541529 - MER3 DNA MER1_type -70 139 48 9 1080 365 194 28 0 chr5 64995730 64995802 -87541457 - MER3 DNA MER1_type -129 80 7 9 1080 212 271 17 17 chr5 64996247 64996307 -87540952 + CT-rich Low_complexity Low_complexity 3 62 0 9 1080 296 48 24 0 chr5 64996348 64996390 -87540869 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 9 1080 210 71 0 0 chr5 64996395 64996423 -87540836 + (CTTTG)n Simple_repeat Simple_repeat 1 28 0 9 1080 1298 263 34 58 chr5 64996479 64996859 -87540400 + MTE2b LTR MaLR 1 371 -8 9 1080 715 296 69 4 chr5 64998272 64998533 -87538726 - MLT1B LTR MaLR -5 385 108 9 1080 1940 212 29 22 chr5 64998535 64999027 -87538232 + RLTR16 LTR ERVK 6 500 -5 9 1080 647 219 0 0 chr5 64999092 64999220 -87538039 - RSINE1 SINE B4 -35 130 3 9 1080 810 178 7 0 chr5 64999297 64999443 -87537816 + B1_Mur4 SINE Alu 3 149 -1 9 1080 256 333 19 45 chr5 64999306 64999460 -87537799 + B4A SINE B4 96 245 -47 9 1080 767 143 0 13 chr5 64999461 64999610 -87537649 + GA-rich Low_complexity Low_complexity 3 149 0 9 1080 776 133 16 0 chr5 64999871 64999999 -87537260 - RMER6A LTR ERVK 0 756 627 9 1080 3431 124 78 14 chr5 65000000 65000587 -87536672 - RMER6A LTR ERVK -131 625 1 1 1080 180 0 0 0 chr5 65001871 65001891 -87535368 + (C)n Simple_repeat Simple_repeat 1 20 0 2 1080 472 260 106 0 chr5 65002514 65002637 -87534622 + B1F SINE Alu 3 138 -11 3 1080 1133 64 21 0 chr5 65002658 65002799 -87534460 + B1_Mus1 SINE Alu 5 148 0 4 1080 305 282 97 0 chr5 65003038 65003141 -87534118 - L1MDa LINE L1 -4543 2090 1978 5 1080 710 269 62 142 chr5 65003812 65003963 -87533296 + MLT1A1 LTR MaLR 1 154 -254 6 1080 1211 41 7 7 chr5 65003963 65004109 -87533150 + B1_Mm SINE Alu 1 146 -1 7 1080 710 269 62 142 chr5 65004109 65004281 -87532978 + MLT1A1 LTR MaLR 155 298 -110 6 1080 1074 173 94 0 chr5 65004281 65004483 -87532776 + URR1A DNA MER1_type 1 221 -5 8 1080 342 0 0 0 chr5 65004546 65004584 -87532675 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 9 1080 621 231 0 30 chr5 65005101 65005235 -87532024 + B1_Mus2 SINE Alu 1 130 -17 1 1080 550 310 39 44 chr5 65005518 65005724 -87531535 + MER58A DNA MER1_type 11 215 -9 1 1080 399 41 0 0 chr5 65005842 65005891 -87531368 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1080 433 274 19 9 chr5 65007204 65007311 -87529948 + ID_B1 SINE B4 96 203 -21 1 1080 472 292 176 40 chr5 65008893 65009171 -87528088 + MLT1B LTR MaLR 1 316 -74 1 1080 194 0 39 0 chr5 65009193 65009219 -87528040 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1080 220 350 62 31 chr5 65009628 65009767 -87527492 + MIRm SINE MIR 56 193 -69 1 1080 789 301 53 80 chr5 65009835 65010196 -87527063 - MLT2D LTR ERVL -63 351 1 1 1080 189 304 0 148 chr5 65010769 65010850 -87526409 - L3 LINE CR1 -3547 942 874 1 1080 1146 230 61 127 chr5 65011074 65011189 -87526070 + ORR1D2 LTR MaLR 3 128 -242 1 1080 2602 145 19 12 chr5 65011189 65011607 -87525652 - MTC LTR MaLR 0 421 1 2 16 1146 230 61 127 chr5 65011607 65011814 -87525445 + ORR1D2 LTR MaLR 129 313 -57 1 1081 1239 48 0 0 chr5 65011814 65011960 -87525299 - B1_Mm SINE Alu 0 147 2 2 1081 1146 230 61 127 chr5 65011960 65012030 -87525229 + ORR1D2 LTR MaLR 314 370 0 1 1081 563 131 101 18 chr5 65012420 65012529 -87524730 + RMER17C LTR ERVK 293 410 0 2 1081 522 230 45 68 chr5 65012912 65013089 -87524170 - MTEa LTR MaLR -4 375 203 2 1081 542 253 113 93 chr5 65013135 65013392 -87523867 - ORR1E LTR MaLR -108 262 1 2 1081 233 280 151 0 chr5 65013437 65013530 -87523729 - L1MEc LINE L1 -6127 273 167 2 1081 1604 163 48 72 chr5 65013633 65014050 -87523209 + RMER17C LTR ERVK 4 410 0 2 1081 236 220 51 0 chr5 65014155 65014214 -87523045 - ID4_ SINE ID -16 67 6 2 1081 694 219 20 7 chr5 65014291 65014438 -87522821 - B1_Mur4 SINE Alu -1 149 1 2 1081 873 279 32 0 chr5 65015735 65015925 -87521334 + ID_B1 SINE B4 16 211 -13 2 1081 204 135 27 0 chr5 65017077 65017114 -87520145 + C-rich Low_complexity Low_complexity 1 38 0 3 1081 310 95 15 31 chr5 65018368 65018433 -87518826 + (CATA)n Simple_repeat Simple_repeat 3 66 0 3 1081 237 259 34 80 chr5 65018942 65019030 -87518229 - Charlie4z DNA MER1_type -81 86 3 3 1081 228 289 102 37 chr5 65019530 65019638 -87517621 - Arthur1B DNA Tip100 -1110 115 1 3 1081 325 254 228 8 chr5 65020099 65020222 -87517037 + RSINE1 SINE B4 2 151 -14 3 1081 225 245 160 38 chr5 65020256 65020362 -87516897 - MIRm SINE MIR -3 273 155 3 1081 186 43 0 0 chr5 65020861 65020884 -87516375 + (AGGGGG)n Simple_repeat Simple_repeat 6 28 0 3 1081 287 61 41 0 chr5 65021068 65021117 -87516142 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1081 813 371 108 44 chr5 65021691 65022423 -87514836 + MER45C DNA Tip100 37 802 -151 3 1081 475 289 13 44 chr5 65022427 65022586 -87514673 + B4 SINE B4 1 154 -138 3 1081 926 197 0 0 chr5 65022540 65022692 -87514567 - B3 SINE B2 -63 153 2 4 1081 386 235 23 98 chr5 65022697 65022829 -87514430 - ID_B1 SINE B4 -1 223 102 4 1081 216 0 0 0 chr5 65022847 65022871 -87514388 + (GA)n Simple_repeat Simple_repeat 2 25 0 4 1081 297 0 0 0 chr5 65022871 65022903 -87514356 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1081 242 277 121 0 chr5 65023249 65023332 -87513927 + MER5A DNA MER1_type 96 188 -1 4 1081 528 317 71 6 chr5 65023934 65024027 -87513232 + ORR1E LTR MaLR 4 107 -252 4 1081 189 0 0 0 chr5 65024027 65024048 -87513211 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 4 1081 528 271 31 22 chr5 65024048 65024200 -87513059 + ORR1E LTR MaLR 108 354 -25 4 1081 250 299 15 0 chr5 65024550 65024617 -87512642 + RSINE1 SINE B4 54 121 -44 4 1081 480 35 0 0 chr5 65024617 65024675 -87512584 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1081 348 24 0 0 chr5 65024675 65024715 -87512544 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1081 360 236 75 11 chr5 65025780 65025874 -87511385 + MIRc SINE MIR 31 130 -138 5 1081 704 12 12 0 chr5 65025982 65026067 -87511192 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 5 1081 231 310 98 49 chr5 65026112 65026295 -87510964 + L1MC LINE L1 2551 2742 -3404 5 1081 222 37 0 0 chr5 65026573 65026600 -87510659 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 5 1081 956 133 0 7 chr5 65026600 65026736 -87510523 - B1_Mus1 SINE Alu -13 135 1 5 1081 300 27 0 0 chr5 65026810 65026847 -87510412 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1081 492 72 0 0 chr5 65027658 65027727 -87509532 + (CAGCC)n Simple_repeat Simple_repeat 3 71 0 5 1081 237 306 164 13 chr5 65027951 65028109 -87509150 + Helitron1Na_Mam RC Helitron 8 189 -873 5 1081 795 228 0 32 chr5 65028109 65028263 -87508996 + RSINE1 SINE B4 1 149 -16 5 1081 244 272 114 80 chr5 65028121 65028265 -87508994 + B2_Mm1t SINE B2 11 161 -32 5 1081 288 0 0 0 chr5 65028265 65028297 -87508962 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1081 244 272 114 80 chr5 65028297 65028328 -87508931 + B2_Mm1t SINE B2 162 192 -1 5 1081 255 388 82 36 chr5 65028686 65028881 -87508378 - ORR1E LTR MaLR -155 204 1 6 1081 312 310 45 85 chr5 65028941 65029301 -87507958 + MLT1J2 LTR MaLR 1 421 -27 6 1081 366 200 61 43 chr5 65029303 65029339 -87507920 - BC1_Mm scRNA scRNA -35 117 78 6 1081 207 0 0 0 chr5 65029339 65029362 -87507897 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 6 1081 366 200 61 43 chr5 65029362 65029440 -87507819 - BC1_Mm scRNA scRNA -75 77 1 6 1081 387 286 25 59 chr5 65029443 65029562 -87507697 - PB1D10 SINE Alu 0 117 3 6 1081 207 0 0 0 chr5 65029580 65029603 -87507656 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1081 2783 276 91 31 chr5 65029644 65030602 -87506657 - Lx8 LINE L1 -3 7470 6455 6 1081 232 348 56 0 chr5 65031010 65031099 -87506160 + L2 LINE L2 2269 2362 -1057 6 1081 194 391 91 0 chr5 65031544 65031654 -87505605 + MIR SINE MIR 25 144 -118 6 1081 226 253 253 0 chr5 65031730 65031821 -87505438 + MLT1K LTR MaLR 327 440 -155 7 1081 430 285 14 65 chr5 65031865 65031892 -87505367 + RSINE1 SINE B4 5 28 -137 7 1081 302 0 26 0 chr5 65031892 65031930 -87505329 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1081 430 285 14 65 chr5 65031930 65032041 -87505218 + RSINE1 SINE B4 29 136 -29 7 1081 748 150 360 0 chr5 65032061 65032214 -87505045 - B3 SINE B2 -6 210 3 7 1081 963 89 0 0 chr5 65032225 65032360 -87504899 + (GAA)n Simple_repeat Simple_repeat 1 135 0 7 1081 476 301 75 34 chr5 65032479 65032703 -87504556 + RLTR12B LTR ERVK 1 238 -290 7 1081 225 83 0 0 chr5 65032703 65032739 -87504520 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 7 1081 476 311 60 29 chr5 65032739 65032866 -87504393 + RLTR12B LTR ERVK 105 279 -249 7 1081 273 250 79 53 chr5 65033275 65033389 -87503870 + MLT1H LTR MaLR 71 187 -362 7 1081 312 83 0 0 chr5 65033442 65033490 -87503769 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1081 276 284 27 0 chr5 65033848 65033922 -87503337 - ID4 SINE ID -1 82 7 7 1081 432 118 0 0 chr5 65033938 65034006 -87503253 + (TG)n Simple_repeat Simple_repeat 2 69 0 8 1081 560 270 36 0 chr5 65034104 65034215 -87503044 - B4A SINE B4 -79 213 99 8 1081 982 131 0 17 chr5 65034228 65034407 -87502852 + (TCC)n Simple_repeat Simple_repeat 2 177 0 8 1081 288 250 169 27 chr5 65034802 65034950 -87502309 - Lx8 LINE L1 -2 7471 7303 8 1081 1935 237 109 8 chr5 65034962 65035456 -87501803 - Lx8 LINE L1 -343 7130 6587 8 1081 3953 167 116 67 chr5 65035486 65036346 -87500913 + RMER19B LTR ERVK 1 902 0 8 1081 1298 205 60 22 chr5 65036400 65036669 -87500590 - Lx8 LINE L1 -983 6490 6212 8 1081 351 65 0 0 chr5 65036681 65036727 -87500532 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 8 1081 1823 114 135 0 chr5 65036989 65037286 -87499973 - MTC LTR MaLR -84 337 1 8 1081 567 122 0 0 chr5 65037499 65037589 -87499670 + (TC)n Simple_repeat Simple_repeat 1 90 0 8 1081 300 137 0 0 chr5 65037588 65037639 -87499620 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1081 204 125 0 0 chr5 65037704 65037736 -87499523 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1081 447 222 0 0 chr5 65038098 65038179 -87499080 + ID SINE ID 2 82 -142 9 1081 203 0 0 36 chr5 65038191 65038219 -87499040 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 9 1081 311 65 0 21 chr5 65038955 65039002 -87498257 + (TCCC)n Simple_repeat Simple_repeat 1 46 0 9 1081 21 0 0 0 chr5 65039056 65039077 -87498182 + AT_rich Low_complexity Low_complexity 1 21 0 9 1081 222 128 0 0 chr5 65039344 65039383 -87497876 + (T)n Simple_repeat Simple_repeat 1 39 0 9 1081 185 307 43 54 chr5 65040225 65040318 -87496941 - L2a LINE L2 -1 3425 3334 9 1081 351 212 0 0 chr5 65040349 65040434 -87496825 + (CA)n Simple_repeat Simple_repeat 2 86 0 9 1081 1959 173 17 17 chr5 65040534 65040893 -87496366 + ORR1B2 LTR MaLR 1 359 -8 9 1081 872 160 34 51 chr5 65040926 65041104 -87496155 + B2_Mm2 SINE B2 1 175 -20 9 1081 1982 130 15 50 chr5 65041329 65041670 -87495589 + ORR1A4 LTR MaLR 1 329 0 9 1081 279 0 0 0 chr5 65041732 65041763 -87495496 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1081 27 0 0 0 chr5 65043126 65043153 -87494106 + AT_rich Low_complexity Low_complexity 1 27 0 1 1081 357 240 30 104 chr5 65043170 65043305 -87493954 + MT2B LTR ERVL 141 265 -336 1 1081 714 97 108 39 chr5 65043214 65043343 -87493916 + B1_Mur4 SINE Alu 12 149 -1 1 1081 582 302 97 29 chr5 65043484 65043753 -87493506 + MER58B DNA MER1_type 54 340 -1 1 1081 658 278 107 30 chr5 65044078 65044349 -87492910 - B4 SINE B4 0 292 1 1 1081 834 78 0 0 chr5 65044414 65044529 -87492730 + (TC)n Simple_repeat Simple_repeat 2 116 0 1 1081 23 68 0 0 chr5 65044547 65044591 -87492668 + AT_rich Low_complexity Low_complexity 1 44 0 1 1081 4911 122 37 1 chr5 65045610 65046358 -87490901 + Lx3C LINE L1 6195 6969 -7 1 1081 235 177 0 31 chr5 65046381 65046445 -87490814 + GA-rich Low_complexity Low_complexity 1 62 0 1 1081 286 210 35 47 chr5 65046456 65046541 -87490718 + GA-rich Low_complexity Low_complexity 2 85 0 1 1081 21 0 0 0 chr5 65047724 65047745 -87489514 + GC_rich Low_complexity Low_complexity 1 21 0 1 1081 396 310 0 50 chr5 65048456 65048575 -87488684 - PB1D10 SINE Alu -4 113 1 1 1081 402 126 862 29 chr5 65048884 65049007 -87488252 + URR1B DNA MER1_type 1 225 0 1 1081 572 275 69 60 chr5 65049024 65049256 -87488003 - ORR1E LTR MaLR -94 265 32 1 1081 407 258 65 24 chr5 65049688 65049811 -87487448 + MLT1A LTR MaLR 27 154 -220 1 1081 770 337 66 18 chr5 65050604 65050936 -87486323 - LTR33 LTR ERVL -159 356 9 1 1081 196 30 29 29 chr5 65050959 65050993 -87486266 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1 1081 244 223 198 21 chr5 65051692 65051788 -87485471 + MIRc SINE MIR 37 149 -119 1 1081 382 188 0 14 chr5 65052024 65052094 -87485165 + PB1D10 SINE Alu 47 115 -2 1 1081 596 279 92 5 chr5 65052819 65053003 -87484256 + ID_B1 SINE B4 2 201 -23 1 1081 273 29 0 0 chr5 65053024 65053058 -87484201 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1081 373 214 43 0 chr5 65054252 65054322 -87482937 + RSINE1 SINE B4 48 120 -45 1 1081 22 56 0 0 chr5 65054653 65054689 -87482570 + AT_rich Low_complexity Low_complexity 1 36 0 1 1081 276 319 72 92 chr5 65054770 65054922 -87482337 + RMER21A LTR ERV1 577 842 -105 1 1081 1538 243 8 28 chr5 65055222 65055574 -87481685 + Lx5 LINE L1 6685 7029 -21 1 1081 315 49 0 0 chr5 65055576 65055617 -87481642 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1 1081 263 308 28 78 chr5 65055881 65056022 -87481237 + L1M5 LINE L1 2349 2482 -3664 1 1081 748 266 75 115 chr5 65057320 65057651 -87479608 - MLT1B LTR MaLR -42 348 31 1 1081 246 267 17 129 chr5 65057955 65058071 -87479188 + MT2B LTR ERVL 154 256 -345 1 1081 677 250 0 0 chr5 65057975 65058115 -87479144 + B1_Mur3 SINE Alu 8 147 -2 1 1081 723 144 0 0 chr5 65058117 65058242 -87479017 + (GGGA)n Simple_repeat Simple_repeat 4 128 0 1 1081 692 283 92 66 chr5 65058558 65058785 -87478474 + B4A SINE B4 60 292 0 1 1081 387 0 0 0 chr5 65059521 65059564 -87477695 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1081 189 254 0 0 chr5 65060130 65060185 -87477074 + (TA)n Simple_repeat Simple_repeat 2 56 0 1 1081 280 0 50 0 chr5 65060364 65060404 -87476855 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1081 261 0 0 0 chr5 65060404 65060432 -87476827 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1081 411 236 44 8 chr5 65060504 65060622 -87476637 - B1F SINE Alu -19 129 14 1 1081 230 277 46 46 chr5 65060559 65060646 -87476613 - B4A SINE B4 -132 160 74 1 1081 1461 78 5 0 chr5 65061170 65061361 -87475898 + B2_Mm1a SINE B2 2 193 0 1 1081 903 178 63 6 chr5 65061445 65061672 -87475587 - Lx7 LINE L1 -114 7582 7369 1 1081 627 51 0 0 chr5 65061672 65061751 -87475508 + (TC)n Simple_repeat Simple_repeat 1 79 0 1 1081 6011 178 27 58 chr5 65061759 65063451 -87473808 - Lx7 LINE L1 -799 6897 5256 1 1081 5590 146 27 37 chr5 65063438 65064706 -87472553 - Lx7 LINE L1 -4325 1555 303 1 1081 489 237 166 34 chr5 65065105 65065386 -87471873 + L1MC3 LINE L1 6848 7140 -645 1 1081 258 330 31 0 chr5 65065766 65065863 -87471396 + Lx7 LINE L1 7579 7678 -18 1 1081 369 316 43 73 chr5 65065867 65066099 -87471160 + L1M4 LINE L1 5154 5378 -768 1 1081 300 280 152 46 chr5 65066164 65066381 -87470878 + L1MC3 LINE L1 7525 7764 -21 1 1081 231 250 39 13 chr5 65067276 65067353 -87469906 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1081 1156 225 20 31 chr5 65067355 65067648 -87469611 - B4A SINE B4 -2 290 1 1 1081 207 0 0 0 chr5 65068717 65068740 -87468519 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1081 1171 82 0 0 chr5 65069257 65069403 -87467856 + B1_Mus2 SINE Alu 2 147 0 1 1081 209 161 0 0 chr5 65069404 65069435 -87467824 + polypurine Low_complexity Low_complexity 2 32 0 1 1081 654 136 129 53 chr5 65070244 65070376 -87466883 + B1_Mur3 SINE Alu 1 142 -7 1 1081 577 193 9 18 chr5 65070585 65070696 -87466563 - PB1D9 SINE Alu -9 111 2 1 1081 27 0 0 0 chr5 65070709 65070736 -87466523 + AT_rich Low_complexity Low_complexity 1 27 0 1 1081 801 177 0 58 chr5 65070745 65070901 -87466358 - B1_Mur2 SINE Alu -2 147 1 1 1081 188 67 33 0 chr5 65071647 65071677 -87465582 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 1 1081 1070 209 0 28 chr5 65071985 65072197 -87465062 + B3 SINE B2 1 206 -10 1 1081 236 111 22 0 chr5 65072197 65072242 -87465017 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 1 1081 262 270 0 98 chr5 65072316 65072398 -87464861 + MLT1A LTR MaLR 4 77 -297 1 1081 241 335 99 35 chr5 65072412 65072613 -87464646 + MLT1A LTR MaLR 143 356 -18 1 1081 340 200 188 0 chr5 65072629 65072709 -87464550 - PB1 SINE Alu 0 127 33 1 1081 426 239 54 101 chr5 65072931 65073080 -87464179 - RSINE1 SINE B4 -1 164 23 1 1081 489 231 19 0 chr5 65073052 65073156 -87464103 + B1_Mur4 SINE Alu 7 112 -38 1 1081 366 246 76 34 chr5 65073055 65073173 -87464086 + ID_B1 SINE B4 90 212 -12 1 1081 183 80 0 0 chr5 65073174 65073199 -87464060 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 1081 313 276 100 45 chr5 65073335 65073445 -87463814 - MER45A DNA Tip100 -4 174 59 1 1081 641 184 83 56 chr5 65074373 65074517 -87462742 + B1_Mur3 SINE Alu 2 149 0 1 1081 497 291 45 32 chr5 65074606 65074762 -87462497 + MLT1A LTR MaLR 19 176 -198 1 1081 1174 155 106 18 chr5 65074868 65075085 -87462174 + RLTR42 LTR ERVK 2 237 -2 1 1081 192 125 0 30 chr5 65075469 65075502 -87461757 + L2b LINE L2 3322 3353 -22 1 1081 214 293 34 17 chr5 65076845 65076904 -87460355 + PB1D10 SINE Alu 35 94 -23 1 1081 217 344 0 0 chr5 65077575 65077639 -87459620 + MIR3 SINE MIR 91 154 -54 1 1081 245 339 67 17 chr5 65077767 65077887 -87459372 - Charlie15a DNA MER1_type -79 145 20 1 1081 2420 224 84 28 chr5 65077998 65078517 -87458742 + Lx8 LINE L1 6418 6962 -511 1 1081 468 0 0 0 chr5 65078517 65078569 -87458690 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1081 2420 224 84 28 chr5 65078569 65078647 -87458612 + Lx8 LINE L1 6963 7047 -426 1 1081 303 389 7 9 chr5 65078912 65079092 -87458167 + MIRm SINE MIR 2 183 -85 1 1081 232 258 84 63 chr5 65079316 65079411 -87457848 - MLT1B LTR MaLR -8 382 286 1 1081 2499 120 28 10 chr5 65079516 65079903 -87457356 - ORR1B1 LTR MaLR 0 394 1 1 1081 646 236 8 0 chr5 65080482 65080609 -87456650 - ID_B1 SINE B4 -13 211 84 1 1081 363 306 133 36 chr5 65080685 65080933 -87456326 - Charlie2b DNA MER1_type -62 2720 2449 1 1081 244 269 198 53 chr5 65080971 65081218 -87456041 - Charlie2b DNA MER1_type -380 2402 2120 1 1081 22 35 0 0 chr5 65081240 65081269 -87455990 + AT_rich Low_complexity Low_complexity 1 29 0 1 1081 310 264 107 15 chr5 65081326 65081457 -87455802 - Charlie2b DNA MER1_type -693 2089 1947 1 1081 267 157 0 0 chr5 65082462 65082513 -87454746 + GA-rich Low_complexity Low_complexity 2 52 0 1 1081 1290 80 0 0 chr5 65082516 65082692 -87454567 + (GGAGA)n Simple_repeat Simple_repeat 1 176 0 1 1081 584 273 0 0 chr5 65083022 65083143 -87454116 + B1F SINE Alu 9 129 -20 1 1081 863 213 6 28 chr5 65083148 65083228 -87454031 + ID SINE ID 1 76 -148 1 1081 372 250 28 69 chr5 65083228 65083378 -87453881 + PB1D10 SINE Alu 1 149 0 1 1081 231 88 0 0 chr5 65083923 65083957 -87453302 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1081 910 220 10 31 chr5 65083964 65084134 -87453125 + B3 SINE B2 24 190 -26 1 1081 1831 161 129 110 chr5 65084134 65084624 -87452635 + RLTR19 LTR ERVK 1 499 0 1 1081 910 220 10 31 chr5 65084624 65084645 -87452614 + B3 SINE B2 191 211 -5 1 1081 625 171 18 37 chr5 65084707 65084816 -87452443 - PB1D9 SINE Alu -5 115 9 1 1081 422 258 0 29 chr5 65085154 65085276 -87451983 + MLT1A1 LTR MaLR 248 408 0 1 1081 917 205 62 24 chr5 65086404 65086614 -87450645 + ID_B1 SINE B4 5 222 -2 1 1081 1462 246 158 46 chr5 65086794 65087356 -87449903 - RMER1C Other Other -1 1341 717 1 1081 343 360 0 9 chr5 65087410 65087522 -87449737 - RMER1C Other Other -1202 140 30 1 1081 223 293 0 0 chr5 65087974 65088015 -87449244 - B1_Mus2 SINE Alu -104 43 3 1 1081 461 202 0 0 chr5 65088060 65088144 -87449115 + B3A SINE B2 2 85 -113 1 1081 1043 243 100 12 chr5 65088553 65088882 -87448377 + ORR1E LTR MaLR 1 358 -1 1 1081 441 0 0 0 chr5 65089532 65089581 -87447678 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1081 195 69 0 0 chr5 65090420 65090449 -87446810 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1081 2049 125 125 27 chr5 65090621 65090990 -87446269 + MTB_Mm LTR MaLR 3 407 0 1 1081 958 284 5 9 chr5 65091091 65091315 -87445944 - ID_B1 SINE B4 0 224 2 1 1081 314 301 151 19 chr5 65091828 65091987 -87445272 - MIRc SINE MIR -17 251 72 1 1081 641 243 169 0 chr5 65092273 65092462 -87444797 + ID_B1 SINE B4 1 221 -3 1 1081 1421 272 106 8 chr5 65092997 65093467 -87443792 - LTR33A_ LTR ERVL -7 524 9 2 1081 406 336 22 0 chr5 65093469 65093603 -87443656 + B1F2 SINE Alu 1 137 -12 2 1081 252 0 0 0 chr5 65093819 65093847 -87443412 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 1081 261 0 0 0 chr5 65093893 65093922 -87443337 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1081 991 79 0 0 chr5 65093922 65094048 -87443211 - B1_Mus2 SINE Alu 0 147 22 2 1081 269 231 0 161 chr5 65093971 65094064 -87443195 - RLTR25A LTR ERVK -531 572 495 2 1081 612 27 0 0 chr5 65094163 65094237 -87443022 + (TG)n Simple_repeat Simple_repeat 2 75 0 2 1081 387 0 0 0 chr5 65095350 65095393 -87441866 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1081 423 0 0 0 chr5 65096374 65096421 -87440838 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1081 383 277 154 14 chr5 65096455 65096598 -87440661 - RSINE1 SINE B4 -1 164 2 2 1081 1283 80 57 0 chr5 65096609 65096784 -87440475 - B2_Mm2 SINE B2 -10 185 1 2 1081 38 0 0 0 chr5 65096963 65097001 -87440258 + AT_rich Low_complexity Low_complexity 1 38 0 2 1081 799 67 242 8 chr5 65097001 65097121 -87440138 - B1_Mus1 SINE Alu 0 148 1 2 1081 189 0 0 0 chr5 65097121 65097142 -87440117 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1081 1412 75 0 16 chr5 65097179 65097370 -87439889 - B2_Mm2 SINE B2 -5 190 3 2 1081 545 286 69 7 chr5 65097927 65098202 -87439057 + B4A SINE B4 1 292 0 2 1081 316 194 87 29 chr5 65099192 65099247 -87438012 + B1F SINE Alu 77 137 -12 2 1081 462 36 0 0 chr5 65099247 65099303 -87437956 + (TAAAA)n Simple_repeat Simple_repeat 4 59 0 2 1081 316 194 87 29 chr5 65099303 65099316 -87437943 + B1F SINE Alu 138 149 0 2 1081 427 278 0 10 chr5 65099503 65099601 -87437658 - RSINE1 SINE B4 -21 144 48 2 1081 784 91 190 0 chr5 65100047 65100168 -87437091 + B1_Mus1 SINE Alu 5 148 0 2 1081 668 141 0 8 chr5 65100169 65100291 -87436968 + (GAAA)n Simple_repeat Simple_repeat 2 122 0 2 1081 197 290 16 16 chr5 65101062 65101125 -87436134 - MIRb SINE MIR -182 86 24 2 1081 441 0 0 0 chr5 65101201 65101250 -87436009 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1081 428 197 271 45 chr5 65102770 65102903 -87434356 + RSINE1 SINE B4 3 165 0 2 1081 2463 38 7 0 chr5 65103316 65103649 -87433610 + L1Md_F2 LINE L1 6266 6582 0 2 1081 252 0 0 0 chr5 65104247 65104275 -87432984 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1081 431 304 35 43 chr5 65104366 65104507 -87432752 - B4A SINE B4 -152 140 1 2 1081 621 0 0 0 chr5 65104693 65104762 -87432497 + (GGGGA)n Simple_repeat Simple_repeat 3 71 0 2 1081 885 271 28 24 chr5 65104964 65105255 -87432004 + B4A SINE B4 1 292 0 2 1081 198 0 0 0 chr5 65105366 65105388 -87431871 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1081 190 270 100 11 chr5 65105467 65105557 -87431702 - L2c LINE L2 -33 3354 3257 2 1081 180 27 81 0 chr5 65105907 65105944 -87431315 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 2 1081 350 274 147 0 chr5 65106459 65106554 -87430705 - PB1D10 SINE Alu -8 109 1 2 1081 424 277 115 0 chr5 65106683 65106813 -87430446 + RSINE1 SINE B4 11 155 -10 2 1081 200 167 0 0 chr5 65107232 65107262 -87429997 + (CAG)n Simple_repeat Simple_repeat 2 31 0 2 1081 405 0 0 0 chr5 65107449 65107494 -87429765 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1081 988 293 66 56 chr5 65108010 65108404 -87428855 + MLT1C LTR MaLR 50 447 -20 2 1081 473 0 18 0 chr5 65108559 65108616 -87428643 + (TTTTTG)n Simple_repeat Simple_repeat 3 60 0 2 1081 596 93 0 11 chr5 65108617 65108704 -87428555 - B1_Mur4 SINE Alu 0 150 65 2 1081 1163 56 7 0 chr5 65109006 65109148 -87428111 + B1_Mus1 SINE Alu 1 143 -5 2 1081 997 133 186 37 chr5 65109325 65109513 -87427746 - B3 SINE B2 0 216 1 2 1081 273 347 17 8 chr5 65109548 65109667 -87427592 - L1M3 LINE L1 -401 5782 5663 2 1081 272 111 19 0 chr5 65109672 65109726 -87427533 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 2 1081 801 196 25 20 chr5 65110633 65110818 -87426441 + B3 SINE B2 2 189 -6 2 1081 264 236 26 53 chr5 65110847 65110923 -87426336 - RSINE1 SINE B4 -25 140 67 2 1081 2306 83 3 84 chr5 65111050 65111117 -87426142 - ORR1A2 LTR MaLR 0 327 269 2 1081 1676 57 0 5 chr5 65111117 65111330 -87425929 - L1Md_F2 LINE L1 -12 6570 6359 2 1081 2306 83 3 84 chr5 65111330 65111618 -87425641 - ORR1A2 LTR MaLR -59 268 1 2 1081 867 135 60 27 chr5 65111887 65111926 -87425333 + URR1A DNA MER1_type 38 78 -148 2 1081 3337 43 5 2 chr5 65111926 65112321 -87424938 - MTA_Mm LTR MaLR 0 396 1 2 1081 867 135 60 27 chr5 65112321 65112464 -87424795 + URR1A DNA MER1_type 79 226 0 2 1081 2626 148 212 3 chr5 65112467 65113038 -87424221 + RMER6C LTR ERVK 1 690 0 2 1081 513 342 68 26 chr5 65113420 65113759 -87423500 + MLT1H LTR MaLR 13 365 -184 2 1081 649 229 36 0 chr5 65113887 65114027 -87423232 - B1_Mur3 SINE Alu -3 146 2 2 1081 2338 119 3 0 chr5 65114123 65114451 -87422808 + ORR1A4 LTR MaLR 1 329 0 2 1081 1042 188 5 9 chr5 65114451 65114661 -87422598 + ORR1A4-int LTR MaLR 1 209 -1754 2 1081 802 210 0 12 chr5 65114655 65114824 -87422435 - ORR1B2 LTR MaLR -200 167 1 2 1081 909 258 207 3 chr5 65114907 65115245 -87422014 + MTB_Mm LTR MaLR 1 407 0 2 1081 1923 153 41 9 chr5 65115196 65115539 -87421720 - ORR1B1 LTR MaLR 0 394 41 2 1081 829 280 100 64 chr5 65115623 65116073 -87421186 - MLT1D LTR MaLR -9 496 31 2 1081 1698 119 253 0 chr5 65116077 65116370 -87420889 + ORR1B2 LTR MaLR 1 367 0 2 1081 1975 238 30 115 chr5 65116371 65116807 -87420452 + ORR1B2-int LTR MaLR 2 399 -971 2 1081 1215 48 7 0 chr5 65116807 65116952 -87420307 - B1_Mus2 SINE Alu -1 146 1 2 1081 1975 238 30 115 chr5 65116952 65117142 -87420117 + ORR1B2-int LTR MaLR 400 575 -795 2 1081 418 136 193 5 chr5 65117140 65117283 -87419976 + ORR1B2-int LTR MaLR 1405 1527 -53 2 1081 549 155 0 0 chr5 65117283 65117386 -87419873 + ORR1B2 LTR MaLR 1 103 -264 2 1081 641 111 0 0 chr5 65117386 65117485 -87419774 + ORR1B2 LTR MaLR 269 367 0 2 1081 399 21 0 0 chr5 65117511 65117559 -87419700 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1081 253 331 28 0 chr5 65117721 65117849 -87419410 - MIRm SINE MIR -91 185 51 2 1081 208 304 0 0 chr5 65118851 65118897 -87418362 - L2a LINE L2 -22 3404 3359 2 1081 216 0 0 0 chr5 65118899 65118923 -87418336 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1081 736 285 146 73 chr5 65119046 65119099 -87418160 + MLT1F LTR MaLR 1 58 -490 2 1081 405 0 0 0 chr5 65119099 65119144 -87418115 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1081 736 285 146 73 chr5 65119144 65119529 -87417730 + MLT1F LTR MaLR 59 471 -77 2 1081 37 69 0 0 chr5 65119764 65119836 -87417423 + AT_rich Low_complexity Low_complexity 1 72 0 2 1081 575 279 29 0 chr5 65119836 65119976 -87417283 + ID_B1 SINE B4 78 221 -3 2 1081 21 0 0 0 chr5 65120462 65120483 -87416776 + AT_rich Low_complexity Low_complexity 1 21 0 2 1081 322 218 48 38 chr5 65120875 65120980 -87416279 - PB1D10 SINE Alu -10 107 2 2 1081 311 279 192 0 chr5 65121096 65121257 -87416002 + MIR SINE MIR 44 235 -27 2 1081 1287 106 32 0 chr5 65121385 65121573 -87415686 - B2_Mm2 SINE B2 -1 194 1 2 1081 938 124 222 0 chr5 65122321 65122506 -87414753 + URR1A DNA MER1_type 1 226 0 2 1081 279 68 16 33 chr5 65123417 65123478 -87413781 + (CAAAAA)n Simple_repeat Simple_repeat 2 61 0 2 1081 202 292 31 0 chr5 65123848 65123913 -87413346 - L2a LINE L2 -18 3408 3342 2 1081 188 161 0 0 chr5 65124038 65124069 -87413190 - L2a LINE L2 -268 3158 3128 2 1081 1630 135 239 3 chr5 65124116 65124413 -87412846 + ORR1B2 LTR MaLR 1 367 0 2 1081 694 332 104 17 chr5 65124808 65125154 -87412105 + RMER1C Other Other 317 692 -650 2 1081 2960 285 45 24 chr5 65125155 65126114 -87411145 + RMER1C Other Other 362 1340 -2 2 1081 464 212 115 133 chr5 65126437 65126655 -87410604 + B3A SINE B2 3 216 0 2 1081 211 177 37 25 chr5 65126755 65126836 -87410423 + (TTGG)n Simple_repeat Simple_repeat 2 83 0 2 1081 207 131 115 0 chr5 65126803 65126864 -87410395 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 2 1081 1059 144 31 36 chr5 65126865 65127060 -87410199 - B2_Mm2 SINE B2 0 195 2 2 1081 785 224 0 26 chr5 65127064 65127215 -87410044 - B1_Mur1 SINE Alu -1 148 2 2 1081 389 200 59 0 chr5 65127347 65127432 -87409827 + ID_B1 SINE B4 130 219 -5 2 1081 763 111 45 7 chr5 65127456 65127610 -87409649 + GA-rich Low_complexity Low_complexity 2 161 0 2 1081 697 118 8 8 chr5 65128025 65128145 -87409114 + (GGA)n Simple_repeat Simple_repeat 2 121 0 2 1081 509 188 139 165 chr5 65128371 65128556 -87408703 + ORR1C1 LTR MaLR 1 164 -214 2 1081 862 9 9 9 chr5 65128556 65128664 -87408595 + (TC)n Simple_repeat Simple_repeat 2 109 0 2 1081 509 188 139 165 chr5 65128664 65128708 -87408551 + ORR1C1 LTR MaLR 165 224 -154 2 1081 285 29 0 0 chr5 65128810 65128844 -87408415 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1081 187 98 63 191 chr5 65128942 65129005 -87408254 + L2c LINE L2 3317 3371 -16 2 1081 379 270 236 0 chr5 65129466 65129644 -87407615 + L2 LINE L2 2691 2910 -509 2 1081 491 319 34 42 chr5 65130053 65130289 -87406970 + B4A SINE B4 8 241 -51 2 1081 285 29 0 0 chr5 65130298 65130332 -87406927 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1081 333 0 0 0 chr5 65131192 65131229 -87406030 + (CCCCCA)n Simple_repeat Simple_repeat 2 38 0 2 1081 426 236 104 0 chr5 65131460 65131566 -87405693 - B3 SINE B2 -82 134 18 2 1081 630 0 0 0 chr5 65131567 65131637 -87405622 + (TTTC)n Simple_repeat Simple_repeat 1 70 0 2 1081 1415 39 0 6 chr5 65131637 65131816 -87405443 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2 1081 329 93 19 0 chr5 65131832 65131886 -87405373 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1081 451 296 0 0 chr5 65131886 65132001 -87405258 - PB1D7 SINE Alu 0 120 6 2 1081 569 254 30 7 chr5 65132203 65132338 -87404921 - RSINE1 SINE B4 -25 140 3 2 1081 2467 157 31 14 chr5 65133064 65133478 -87403781 + MTC LTR MaLR 1 421 0 3 1081 434 282 23 8 chr5 65133799 65133931 -87403328 - MIRb SINE MIR -78 190 57 3 1081 210 307 28 47 chr5 65134061 65134155 -87403104 + B1F1 SINE Alu 1 92 -57 3 1081 1279 229 93 20 chr5 65134155 65134498 -87402761 + ORR1D2 LTR MaLR 3 370 0 3 1081 329 213 26 13 chr5 65134498 65134574 -87402685 + ORR1D2-int LTR MaLR 1 77 -1293 3 1081 1797 181 33 72 chr5 65134575 65134776 -87402483 + MTD LTR MaLR 1 210 -209 3 1081 1625 103 33 14 chr5 65134776 65135051 -87402208 + Lx LINE L1 6374 6653 -1 3 1081 1797 181 33 72 chr5 65135051 65135277 -87401982 + MTD LTR MaLR 211 411 -8 3 1081 4050 235 72 48 chr5 65135280 65136379 -87400880 + ORR1D2-int LTR MaLR 73 1189 -181 3 1081 207 0 0 0 chr5 65136379 65136402 -87400857 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1081 4050 235 72 48 chr5 65136402 65136531 -87400728 + ORR1D2-int LTR MaLR 1190 1330 -40 3 1081 914 275 98 11 chr5 65136546 65136833 -87400426 + ORR1D2 LTR MaLR 1 312 -58 3 1081 798 120 256 6 chr5 65136842 65137018 -87400241 + URR1A DNA MER1_type 7 226 0 3 1081 273 180 0 0 chr5 65137019 65137069 -87400190 + ORR1D2 LTR MaLR 317 366 -8 3 1081 259 286 0 13 chr5 65137086 65137099 -87400160 + polypurine Low_complexity Low_complexity 2 14 0 3 1081 1214 48 0 0 chr5 65137099 65137246 -87400013 + B1_Mus2 SINE Alu 1 147 0 3 1081 259 286 0 13 chr5 65137246 65137310 -87399949 + GA-rich Low_complexity Low_complexity 15 77 0 3 1081 844 120 83 0 chr5 65137417 65137550 -87399709 + B1_Mur4 SINE Alu 7 150 0 3 1081 260 263 116 89 chr5 65137421 65137567 -87399692 + B4A SINE B4 95 244 -48 3 1081 681 238 81 29 chr5 65137696 65137869 -87399390 - B3A SINE B2 -16 182 1 3 1081 566 95 11 0 chr5 65139012 65139107 -87398152 - L1Md_F2 LINE L1 -2 6580 6485 3 1081 336 48 0 0 chr5 65139472 65139514 -87397745 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 3 1081 360 0 0 0 chr5 65139514 65139553 -87397706 + (GAGAA)n Simple_repeat Simple_repeat 5 44 0 3 1081 843 270 26 48 chr5 65140248 65140520 -87396739 - B4A SINE B4 -3 289 24 3 1081 351 44 0 0 chr5 65140701 65140746 -87396513 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1081 259 229 16 16 chr5 65140754 65140816 -87396443 + GA-rich Low_complexity Low_complexity 2 63 0 3 1081 396 0 0 0 chr5 65141247 65141291 -87395968 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1081 601 222 34 27 chr5 65141446 65141594 -87395665 - B1F SINE Alu 0 149 1 3 1081 414 0 0 0 chr5 65142146 65142192 -87395067 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1081 498 17 0 0 chr5 65142192 65142250 -87395009 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1081 297 290 18 45 chr5 65142431 65142543 -87394716 - PB1D9 SINE Alu -8 112 4 3 1082 305 225 56 14 chr5 65143379 65143451 -87393808 + PB1 SINE Alu 13 87 -40 3 1082 992 106 35 0 chr5 65143453 65143595 -87393664 + B1_Mur4 SINE Alu 3 149 -1 3 1082 290 253 65 21 chr5 65143794 65143887 -87393372 + B3A SINE B2 5 101 -97 3 1082 240 35 0 0 chr5 65143949 65143978 -87393281 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 3 1082 229 204 0 0 chr5 65145161 65145205 -87392054 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 3 1082 228 303 106 37 chr5 65145298 65145459 -87391800 - MER102c DNA MER1_type -71 260 89 3 1082 601 220 171 35 chr5 65145476 65145646 -87391613 - B3A SINE B2 -5 193 1 3 1082 336 327 141 0 chr5 65145698 65145746 -87391513 + B4A SINE B4 2 62 -230 3 1082 225 0 0 0 chr5 65145746 65145771 -87391488 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1082 336 293 378 0 chr5 65145771 65145939 -87391320 + B4A SINE B4 63 286 -6 3 1082 448 95 0 0 chr5 65146091 65146154 -87391105 + MTC LTR MaLR 1 63 -358 3 1082 470 186 0 38 chr5 65146157 65146263 -87390996 + MTC LTR MaLR 320 421 0 3 1082 737 230 60 57 chr5 65146322 65146654 -87390605 - RLTR15 LTR ERVK -26 333 1 3 1082 4597 165 128 87 chr5 65146654 65146794 -87390465 + MTC-int LTR MaLR 36 173 -1085 3 1082 815 152 13 40 chr5 65146794 65146945 -87390314 + B1_Mur3 SINE Alu 3 149 0 3 1082 4597 165 128 87 chr5 65146945 65147761 -87389498 + MTC-int LTR MaLR 174 1076 -182 3 1082 1219 41 0 0 chr5 65147761 65147908 -87389351 - B1_Mus1 SINE Alu -1 147 1 3 1082 4597 165 128 87 chr5 65147908 65148086 -87389173 + MTC-int LTR MaLR 1077 1217 -41 3 1082 374 178 0 0 chr5 65148086 65148159 -87389100 + MTC LTR MaLR 1 73 -348 3 1082 437 145 12 12 chr5 65148165 65148249 -87389010 + MTC LTR MaLR 330 413 -8 3 1082 567 204 0 9 chr5 65148394 65148503 -87388756 + B1_Mur2 SINE Alu 1 108 -41 3 1082 496 260 43 80 chr5 65148564 65148727 -87388532 + RSINE1 SINE B4 5 161 -4 3 1082 423 254 40 47 chr5 65149324 65149473 -87387786 + B1F SINE Alu 1 148 -1 3 1082 312 27 0 0 chr5 65150089 65150126 -87387133 + (CTTG)n Simple_repeat Simple_repeat 1 37 0 3 1082 285 316 0 0 chr5 65150127 65150203 -87387056 - ID4_ SINE ID -4 79 4 3 1082 473 170 43 35 chr5 65150252 65150368 -87386891 + PB1D10 SINE Alu 1 117 0 3 1082 587 295 72 98 chr5 65150698 65151033 -87386226 + MTEa LTR MaLR 1 326 -53 3 1082 284 294 0 0 chr5 65151098 65151166 -87386093 + ID4 SINE ID 7 74 -9 3 1082 330 26 0 0 chr5 65151172 65151211 -87386048 + (CATA)n Simple_repeat Simple_repeat 4 42 0 3 1082 906 238 14 19 chr5 65151271 65151481 -87385778 + B3 SINE B2 1 209 -7 3 1082 295 23 22 22 chr5 65151569 65151614 -87385645 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 3 1082 2157 155 51 15 chr5 65151622 65152015 -87385244 - MTB_Mm LTR MaLR 0 407 1 3 1082 262 260 0 88 chr5 65152053 65152133 -87385126 - B1F2 SINE Alu -74 75 3 3 1082 230 303 0 0 chr5 65152151 65152217 -87385042 - L1M5 LINE L1 -419 5705 5640 3 1082 473 252 19 43 chr5 65152222 65152384 -87384875 + RSINE1 SINE B4 4 161 -4 3 1082 243 0 0 0 chr5 65152411 65152438 -87384821 + (TTAAA)n Simple_repeat Simple_repeat 5 31 0 3 1082 1212 232 72 20 chr5 65153559 65153907 -87383352 - ORR1D2 LTR MaLR -4 366 1 3 1082 2186 206 45 67 chr5 65154007 65154270 -87382989 + ORR1D-int LTR MaLR 34 269 -1101 3 1082 279 0 0 0 chr5 65154270 65154301 -87382958 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1082 2186 206 45 67 chr5 65154301 65154666 -87382593 + ORR1D-int LTR MaLR 270 648 -722 3 1082 432 0 0 0 chr5 65155185 65155233 -87382026 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1082 2210 138 129 15 chr5 65156005 65156462 -87380797 + RLTR11A2 LTR ERVK 19 527 0 3 1082 1223 118 6 11 chr5 65156554 65156734 -87380525 + B2_Mm1a SINE B2 1 179 -14 3 1082 308 80 316 26 chr5 65156783 65156897 -87380362 + B2_Mm2 SINE B2 49 195 0 3 1082 389 231 0 81 chr5 65156902 65157001 -87380258 + B3A SINE B2 107 197 -1 3 1082 286 315 64 35 chr5 65157080 65157251 -87380008 - L2a LINE L2 -53 3373 3198 3 1082 320 147 28 42 chr5 65157306 65157377 -87379882 + B1_Mus1 SINE Alu 2 71 -77 3 1082 388 230 46 31 chr5 65157319 65157392 -87379867 + ID_B1 SINE B4 92 164 -60 3 1082 2189 123 25 0 chr5 65157392 65157710 -87379549 - ORR1A3 LTR MaLR 0 326 1 3 1082 388 230 46 31 chr5 65157710 65157766 -87379493 + ID_B1 SINE B4 165 222 -2 3 1082 993 236 19 0 chr5 65158696 65158912 -87378347 - ID_B1 SINE B4 -2 222 3 3 1082 867 114 8 15 chr5 65158918 65159051 -87378208 - B1_Mur3 SINE Alu -6 143 12 3 1082 369 179 63 111 chr5 65158940 65159066 -87378193 - MT2B LTR ERVL -322 279 160 3 1082 1660 199 224 55 chr5 65159571 65160313 -87376946 + RMER6C LTR ERVK 4 720 0 3 1082 898 132 235 28 chr5 65160520 65160699 -87376560 + B3 SINE B2 1 216 0 3 1082 780 213 75 0 chr5 65160806 65160994 -87376265 + ORR1D2 LTR MaLR 158 359 -11 3 1082 1505 300 79 72 chr5 65161005 65161831 -87375428 - L1MEc LINE L1 -2749 3570 2704 3 1082 230 301 123 0 chr5 65161831 65161904 -87375355 + ID4_ SINE ID 2 83 0 3 1082 1505 300 79 72 chr5 65161904 65162401 -87374858 - L1MEc LINE L1 -2749 2703 2180 3 1082 660 243 114 9 chr5 65162468 65162688 -87374571 + MER47B DNA MER2_type 9 251 -167 3 1082 249 272 127 53 chr5 65162756 65163055 -87374204 - L1MEc LINE L1 -4278 2122 1802 3 1082 252 270 137 51 chr5 65163201 65163318 -87373941 - MTEa LTR MaLR -250 129 3 3 1082 285 368 84 13 chr5 65163713 65164024 -87373235 - L1MEc LINE L1 -6020 380 48 3 1082 570 124 0 0 chr5 65164267 65164356 -87372903 + (TA)n Simple_repeat Simple_repeat 1 89 0 3 1082 951 79 29 0 chr5 65164356 65164495 -87372764 - B2_Mm2 SINE B2 -51 144 2 3 1082 408 130 0 0 chr5 65164545 65164614 -87372645 + (TCTCCC)n Simple_repeat Simple_repeat 3 71 0 3 1082 333 0 0 0 chr5 65164641 65164682 -87372577 + B1_Mus2 SINE Alu 92 132 -15 3 1082 1783 161 34 31 chr5 65164688 65165041 -87372218 + ORR1B1 LTR MaLR 41 394 0 3 1082 795 191 7 7 chr5 65165533 65165675 -87371584 + B1_Mus2 SINE Alu 2 143 -4 3 1082 218 274 160 104 chr5 65165692 65165736 -87371523 + RSINE1 SINE B4 54 114 -51 3 1082 3991 41 19 0 chr5 65165736 65166202 -87371057 + MT2C_Mm LTR ERVL 1 475 0 3 1082 218 274 160 104 chr5 65166202 65166234 -87371025 + RSINE1 SINE B4 115 141 -24 3 1082 516 59 0 0 chr5 65166234 65166302 -87370957 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1082 218 274 160 104 chr5 65166302 65166330 -87370929 + RSINE1 SINE B4 142 165 0 3 1082 225 268 100 44 chr5 65166409 65166499 -87370760 + PB1D10 SINE Alu 1 95 -22 3 1082 1178 218 161 19 chr5 65166701 65167024 -87370235 - ORR1D2 LTR MaLR -1 369 1 3 1082 3064 214 119 27 chr5 65167029 65168282 -87368977 - ORR1D2-int LTR MaLR -2 1368 1 3 1082 502 167 0 97 chr5 65168712 65168825 -87368434 + U5 snRNA snRNA 1 102 -14 3 1082 353 211 0 27 chr5 65169356 65169429 -87367830 - RLTR25A LTR ERVK -511 592 522 3 1082 424 164 0 0 chr5 65169364 65169437 -87367822 - B1_Mus2 SINE Alu -37 110 38 3 1082 412 159 10 83 chr5 65169372 65169468 -87367791 - MT2B LTR ERVL -344 257 169 3 1082 247 158 0 0 chr5 65169955 65169993 -87367266 + polypurine Low_complexity Low_complexity 2 39 0 3 1082 630 104 0 0 chr5 65169993 65170089 -87367170 + (GA)n Simple_repeat Simple_repeat 1 96 0 3 1082 746 167 74 6 chr5 65170092 65170255 -87367004 - ORR1D2 LTR MaLR -191 176 3 3 1082 254 322 83 68 chr5 65170365 65170710 -87366549 + MLT1A LTR MaLR 1 359 0 3 1082 384 276 154 0 chr5 65170785 65170908 -87366351 - B1F1 SINE Alu -3 146 5 3 1082 649 296 6 48 chr5 65170946 65171113 -87366146 + RSINE1 SINE B4 6 165 0 3 1082 264 349 72 58 chr5 65171113 65171153 -87366106 + B3 SINE B2 5 214 -2 3 1082 1135 110 6 0 chr5 65171164 65171327 -87365932 - B2_Mm2 SINE B2 -30 165 2 3 1082 280 264 28 0 chr5 65171570 65171642 -87365617 - ORR1E LTR MaLR -221 138 65 3 1082 1126 111 77 6 chr5 65172860 65173042 -87364217 - B2_Mm2 SINE B2 0 195 1 4 1082 1009 40 0 0 chr5 65173298 65173422 -87363837 + B1_Mus1 SINE Alu 25 148 0 4 1082 2829 84 11 0 chr5 65173508 65173888 -87363371 - L1_Mus1 LINE L1 0 6567 6184 4 1082 702 184 0 54 chr5 65174318 65174405 -87362854 + MT2A LTR ERVL 376 462 -71 4 1082 477 0 0 0 chr5 65174405 65174458 -87362801 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 4 1082 702 184 0 54 chr5 65174458 65174537 -87362722 + MT2A LTR ERVL 463 533 0 4 1082 452 174 76 0 chr5 65174541 65174633 -87362626 + MERVL_2A-int LTR ERVL 5 103 -5658 4 1082 1639 164 42 29 chr5 65174626 65174866 -87362393 + MERVL_2A-int LTR ERVL 205 456 -5305 4 1082 1200 155 60 9 chr5 65174866 65175081 -87362178 + URR1A DNA MER1_type 1 226 0 4 1082 1639 164 42 29 chr5 65175081 65175147 -87362112 + MERVL_2A-int LTR ERVL 457 515 -5246 4 1082 1958 133 21 18 chr5 65175155 65175483 -87361776 - ORR1A4 LTR MaLR 0 329 1 4 1082 6460 122 24 27 chr5 65175483 65176758 -87360501 - ORR1A4-int LTR MaLR -191 1772 795 4 1082 331 336 106 0 chr5 65176704 65176817 -87360442 - B1_Mur3 SINE Alu -22 127 3 4 1082 1406 131 208 0 chr5 65176817 65177025 -87360234 - MT2B LTR ERVL -342 259 3 4 1082 23076 142 76 41 chr5 65177026 65177734 -87359525 + MERVL_2A-int LTR ERVL 531 1284 -4477 4 1082 670 127 0 19 chr5 65177734 65177838 -87359421 + B1_Mur4 SINE Alu 14 115 -35 4 1082 23076 142 76 41 chr5 65177838 65179874 -87357385 + MERVL_2A-int LTR ERVL 1285 3454 -2307 4 1082 3522 132 209 8 chr5 65179874 65180486 -87356773 - RMER19A LTR ERVK 0 737 3 4 1082 23076 142 76 41 chr5 65180486 65181644 -87355615 + MERVL_2A-int LTR ERVL 3455 4676 -1085 4 1082 1011 198 130 106 chr5 65181684 65182137 -87355122 + MT2B LTR ERVL 1 599 -2 4 1082 300 330 78 0 chr5 65182143 65182246 -87355013 + Tigger5 DNA MER2_type 46 156 -2250 4 1082 630 189 135 8 chr5 65182348 65182481 -87354778 + B1_Mur4 SINE Alu 1 150 0 4 1082 27 62 0 0 chr5 65182581 65182629 -87354630 + AT_rich Low_complexity Low_complexity 1 48 0 4 1082 587 255 29 82 chr5 65182633 65182804 -87354455 - RSINE1 SINE B4 0 165 4 4 1082 258 340 32 0 chr5 65182823 65182836 -87354423 - ID_B1 SINE B4 -35 189 93 4 1082 291 284 12 0 chr5 65182836 65182917 -87354342 - PB1D10 SINE Alu -24 93 12 4 1082 236 322 11 11 chr5 65182839 65182927 -87354332 - 4.5SRNA scRNA scRNA -6 88 1 4 1082 297 0 0 0 chr5 65182954 65182987 -87354272 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1082 599 274 105 38 chr5 65183031 65183297 -87353962 - B4A SINE B4 -8 284 1 4 1082 312 27 0 0 chr5 65183807 65183844 -87353415 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1082 565 172 20 0 chr5 65183845 65183944 -87353315 - B1_Mur3 SINE Alu -15 134 34 4 1082 583 187 109 29 chr5 65184000 65184138 -87353121 + B1_Mur3 SINE Alu 1 149 0 4 1082 405 287 39 83 chr5 65184358 65184563 -87352696 - L1M LINE L1 -760 5480 5285 4 1082 245 330 45 0 chr5 65184621 65184709 -87352550 - PB1D10 SINE Alu -17 100 9 4 1082 819 162 35 0 chr5 65184845 65184987 -87352272 + B1_Mus1 SINE Alu 1 147 -1 4 1082 183 42 0 0 chr5 65184994 65185018 -87352241 + (TAAAAA)n Simple_repeat Simple_repeat 4 27 0 4 1082 1939 149 135 10 chr5 65185525 65185911 -87351348 - Lx3C LINE L1 -2 6974 6541 4 1082 2835 140 158 76 chr5 65186040 65186678 -87350581 + RMER6C LTR ERVK 1 690 0 4 1082 325 321 0 52 chr5 65186705 65186820 -87350439 + PB1D10 SINE Alu 7 115 -2 4 1082 348 83 0 0 chr5 65186883 65186931 -87350328 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 4 1082 273 125 0 0 chr5 65187448 65187504 -87349755 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 4 1082 545 258 86 57 chr5 65187543 65187823 -87349436 + B4A SINE B4 5 292 0 4 1082 207 0 0 0 chr5 65187836 65187859 -87349400 + (GGA)n Simple_repeat Simple_repeat 2 24 0 4 1082 477 0 0 0 chr5 65187928 65187981 -87349278 + (GA)n Simple_repeat Simple_repeat 2 54 0 4 1082 926 148 194 6 chr5 65187981 65188151 -87349108 + B3 SINE B2 14 215 -1 4 1082 607 284 217 27 chr5 65188226 65188526 -87348733 + MTEa LTR MaLR 21 377 -2 4 1082 316 361 147 10 chr5 65188617 65188821 -87348438 - MLT1L LTR MaLR -225 385 154 4 1082 1364 157 147 67 chr5 65189044 65189344 -87347915 + ORR1A3 LTR MaLR 1 324 -2 4 1082 2420 133 3 3 chr5 65189344 65189722 -87347537 + ORR1A3-int LTR MaLR 3 380 -1583 4 1082 266 312 64 77 chr5 65189707 65189721 -87347538 + CYRA11_Mm Unknown Y-chromosome 256 320 -297 4 1082 777 143 32 0 chr5 65189721 65189847 -87347412 - URR1A DNA MER1_type -96 130 1 4 1082 266 312 64 77 chr5 65189847 65189863 -87347396 + CYRA11_Mm Unknown Y-chromosome 321 409 -208 4 1082 489 203 54 47 chr5 65189952 65190081 -87347178 + ORR1D2 LTR MaLR 1 130 -240 4 1082 2416 155 31 61 chr5 65190096 65190871 -87346388 - RMER6C LTR ERVK 0 756 56 4 1082 776 206 62 47 chr5 65190888 65191081 -87346178 + ORR1D2 LTR MaLR 170 365 -5 4 1082 4957 219 92 11 chr5 65191086 65192354 -87344905 + ORR1D2-int LTR MaLR 1 1370 0 4 1082 966 253 109 24 chr5 65192355 65192695 -87344564 + ORR1D2 LTR MaLR 2 370 0 4 1082 21 0 0 0 chr5 65194473 65194494 -87342765 + GC_rich Low_complexity Low_complexity 1 21 0 4 1082 198 128 0 0 chr5 65194541 65194580 -87342679 + (CGGGGG)n Simple_repeat Simple_repeat 3 41 0 4 1082 23 0 0 0 chr5 65195424 65195447 -87341812 + GC_rich Low_complexity Low_complexity 1 23 0 4 1082 198 118 0 0 chr5 65198827 65198861 -87338398 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1082 233 268 27 40 chr5 65200830 65200904 -87336355 + MIRc SINE MIR 122 194 -74 4 1082 222 206 143 61 chr5 65201206 65201304 -87335955 + MIR SINE MIR 37 142 -120 4 1082 271 343 28 0 chr5 65201448 65201556 -87335703 - PB1D9 SINE Alu -8 112 2 4 1082 213 65 0 0 chr5 65204619 65204650 -87332609 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1082 329 214 68 0 chr5 65205001 65205098 -87332161 + B1_Mur1 SINE Alu 10 149 0 4 1082 212 207 32 79 chr5 65205284 65205347 -87331912 - ID4_ SINE ID -16 67 8 4 1082 268 287 16 107 chr5 65205549 65205670 -87331589 - ID_B1 SINE B4 -34 190 81 4 1082 231 36 0 0 chr5 65206228 65206256 -87331003 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1082 438 236 192 104 chr5 65206607 65206818 -87330441 - B3A SINE B2 0 216 1 4 1082 339 243 0 13 chr5 65206826 65206901 -87330358 - PB1D7 SINE Alu -1 119 46 4 1082 441 36 0 0 chr5 65207147 65207202 -87330057 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1082 232 333 0 0 chr5 65207227 65207287 -87329972 - RSINE1 SINE B4 -103 62 3 4 1082 642 162 84 49 chr5 65207321 65207464 -87329795 - B1_Mur3 SINE Alu 0 149 2 4 1082 28 29 0 0 chr5 65209022 65209057 -87328202 + AT_rich Low_complexity Low_complexity 1 35 0 4 1082 922 155 104 85 chr5 65209073 65209285 -87327974 + URR1A DNA MER1_type 1 216 -10 4 1082 593 228 203 37 chr5 65209457 65209698 -87327561 - MTD LTR MaLR -133 286 6 4 1082 435 208 9 38 chr5 65209957 65210062 -87327197 - PB1D10 SINE Alu 0 117 16 4 1082 812 235 22 0 chr5 65210049 65210232 -87327027 - B3 SINE B2 -29 187 1 4 1082 354 23 0 0 chr5 65210270 65210313 -87326946 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1082 21 0 0 0 chr5 65210359 65210380 -87326879 + AT_rich Low_complexity Low_complexity 1 21 0 4 1082 398 235 34 0 chr5 65211924 65212026 -87325233 + PB1D7 SINE Alu 1 111 -9 4 1082 234 0 0 0 chr5 65212169 65212195 -87325064 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1082 401 179 179 0 chr5 65212721 65212816 -87324443 + PB1D7 SINE Alu 2 113 -7 4 1082 396 302 0 25 chr5 65215413 65215532 -87321727 - PB1D10 SINE Alu -1 116 1 4 1082 419 269 11 0 chr5 65215798 65215891 -87321368 + PB1D10 SINE Alu 1 94 -23 4 1082 25 0 0 0 chr5 65215913 65215938 -87321321 + AT_rich Low_complexity Low_complexity 1 25 0 4 1082 976 57 0 0 chr5 65216548 65216672 -87320587 + B1_Mus1 SINE Alu 25 148 0 4 1082 236 216 93 13 chr5 65216979 65217054 -87320205 - MIR SINE MIR -77 185 105 4 1082 22 0 0 0 chr5 65217335 65217357 -87319902 + AT_rich Low_complexity Low_complexity 1 22 0 4 1082 695 224 49 6 chr5 65217991 65218153 -87319106 + L2b LINE L2 3203 3371 -4 4 1082 276 111 0 0 chr5 65218186 65218231 -87319028 + (T)n Simple_repeat Simple_repeat 1 45 0 4 1082 1156 49 28 0 chr5 65218698 65218842 -87318417 + B1_Mus1 SINE Alu 1 148 0 4 1082 1427 149 0 9 chr5 65219370 65219594 -87317665 - URR1B DNA MER1_type -2 223 2 4 1082 254 73 24 0 chr5 65220439 65220480 -87316779 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1082 354 98 0 0 chr5 65222835 65222886 -87314373 + (TATG)n Simple_repeat Simple_repeat 2 52 0 4 1082 235 93 18 53 chr5 65222955 65223012 -87314247 + T-rich Low_complexity Low_complexity 6 60 0 4 1082 1246 209 95 65 chr5 65224434 65224864 -87312395 - MTD-int LTR MaLR -815 443 1 4 1082 1545 199 44 93 chr5 65224877 65225056 -87312203 - MTD LTR MaLR -30 389 211 4 1082 1416 60 38 0 chr5 65225056 65225241 -87312018 - B2_Mm1a SINE B2 0 193 2 4 1082 1545 199 44 93 chr5 65225241 65225470 -87311789 - MTD LTR MaLR -209 210 1 4 1082 410 155 46 55 chr5 65225749 65225858 -87311401 + MLT1A1 LTR MaLR 300 407 -1 4 1082 27 0 0 0 chr5 65225861 65225888 -87311371 + AT_rich Low_complexity Low_complexity 1 27 0 4 1082 288 0 0 0 chr5 65225954 65225986 -87311273 + (TC)n Simple_repeat Simple_repeat 2 33 0 4 1082 297 0 0 0 chr5 65225986 65226018 -87311241 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1082 683 252 0 7 chr5 65226019 65226167 -87311092 - RSINE1 SINE B4 -16 149 3 4 1082 430 241 156 28 chr5 65226373 65226514 -87310745 - RSINE1 SINE B4 -4 161 3 4 1082 344 270 239 0 chr5 65226898 65227057 -87310202 - MTE-int LTR MaLR -57 1523 1327 4 1082 318 248 58 19 chr5 65227061 65227164 -87310095 - RLTR23 LTR ERV1 -2 428 322 4 1082 1529 217 34 13 chr5 65227214 65227601 -87309658 + RLTR22_Mur LTR ERVK 415 809 -1039 4 1082 417 256 14 43 chr5 65227639 65227778 -87309481 + RLTR22_Mur LTR ERVK 1581 1715 -133 4 1082 707 166 79 6 chr5 65227817 65227981 -87309278 - MTE-int LTR MaLR -1404 176 1 4 1082 431 292 99 0 chr5 65228136 65228297 -87308962 - ORR1E LTR MaLR -182 177 1 4 1082 227 29 57 0 chr5 65228472 65228507 -87308752 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1082 726 12 0 0 chr5 65228621 65228704 -87308555 + (TC)n Simple_repeat Simple_repeat 1 83 0 4 1082 312 172 0 0 chr5 65228725 65228783 -87308476 + CT-rich Low_complexity Low_complexity 3 60 0 4 1082 286 140 330 27 chr5 65228799 65228908 -87308351 - B2_Mm2 SINE B2 -7 188 47 5 1082 1097 109 11 28 chr5 65228955 65229135 -87308124 - B2_Mm1t SINE B2 -14 179 3 5 1082 4348 49 2 0 chr5 65229310 65229839 -87307420 - L1_Mus3 LINE L1 -484 6154 5625 5 1082 2165 81 7 3 chr5 65229840 65230136 -87307123 + L1_Mus3 LINE L1 6342 6638 0 5 1082 1333 162 283 30 chr5 65230372 65230740 -87306519 - RMER6B LTR ERVK 0 461 1 5 1082 347 186 0 14 chr5 65231084 65231155 -87306104 - B3 SINE B2 -1 215 146 5 1082 628 318 0 27 chr5 65231758 65231981 -87305278 + L1M2 LINE L1 3620 3836 -2307 5 1082 253 155 51 17 chr5 65231981 65232040 -87305219 - MTC LTR MaLR 0 421 361 5 1082 1461 225 39 31 chr5 65232040 65232398 -87304861 - ORR1B1 LTR MaLR -1 369 9 5 1082 269 224 35 12 chr5 65232440 65232526 -87304733 - ORR1B1-int LTR MaLR -42 1328 1241 5 1082 563 275 174 0 chr5 65232592 65232695 -87304564 + RMER1C Other Other 585 641 -701 5 1082 4128 164 75 106 chr5 65232695 65233626 -87303633 + RMER19B LTR ERVK 1 902 0 5 1082 4537 199 26 47 chr5 65233626 65234615 -87302644 + RMER1B Other Other 164 1066 0 5 1082 1205 48 0 20 chr5 65234620 65234770 -87302489 + B1_Mm SINE Alu 1 147 0 5 1082 237 132 0 0 chr5 65234772 65234810 -87302449 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1082 1202 150 26 22 chr5 65234812 65235044 -87302215 - ORR1B1-int LTR MaLR -112 1258 1026 5 1082 963 239 98 4 chr5 65235045 65235322 -87301937 - ORR1B1-int LTR MaLR -1067 303 1 5 1082 1205 231 64 38 chr5 65235322 65235692 -87301567 - ORR1B1 LTR MaLR 0 394 15 5 1082 6043 169 122 29 chr5 65235692 65237073 -87300186 - ORR1B1-int LTR MaLR 0 1509 1 5 1082 2121 154 45 11 chr5 65237073 65237453 -87299806 - ORR1B1 LTR MaLR 0 394 2 5 1082 349 277 0 47 chr5 65237454 65237560 -87299699 - ORR1D2 LTR MaLR -267 103 3 5 1082 1405 241 55 9 chr5 65237562 65237905 -87299354 - MTD LTR MaLR -58 361 3 5 1082 695 270 49 93 chr5 65237907 65238033 -87299226 + L1M2 LINE L1 3832 3952 -2191 5 1082 1330 60 32 37 chr5 65238033 65238206 -87299053 + B2_Mm1t SINE B2 2 180 -13 5 1082 813 114 0 0 chr5 65238206 65238329 -87298930 + (GAAA)n Simple_repeat Simple_repeat 2 124 0 5 1082 1330 60 32 37 chr5 65238329 65238344 -87298915 + B2_Mm1t SINE B2 181 189 -4 5 1082 695 270 49 93 chr5 65238344 65238572 -87298687 + L1M2 LINE L1 3953 4182 -1961 5 1082 1719 160 82 51 chr5 65238572 65238928 -87298331 + ORR1B2 LTR MaLR 1 367 0 5 1082 695 270 49 93 chr5 65238928 65239079 -87298180 + L1M2 LINE L1 4183 4316 -1827 5 1082 486 0 0 0 chr5 65239193 65239247 -87298012 + (TTTTA)n Simple_repeat Simple_repeat 3 56 0 5 1082 281 247 11 86 chr5 65239289 65239382 -87297877 - RSINE1 SINE B4 -37 128 43 5 1082 273 232 0 0 chr5 65239412 65239481 -87297778 + GA-rich Low_complexity Low_complexity 5 73 0 5 1082 192 83 0 59 chr5 65239637 65239688 -87297571 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 5 1082 360 264 0 22 chr5 65240084 65240173 -87297086 - RSINE1 SINE B4 -57 108 22 5 1082 1004 136 11 33 chr5 65240181 65240364 -87296895 + ORR1D1 LTR MaLR 3 181 -193 5 1082 524 160 10 0 chr5 65240365 65240465 -87296794 + CT-rich Low_complexity Low_complexity 3 103 0 5 1082 754 175 46 25 chr5 65240465 65240674 -87296585 + ORR1D1 LTR MaLR 174 384 0 5 1082 27 0 0 0 chr5 65240683 65240710 -87296549 + AT_rich Low_complexity Low_complexity 1 27 0 5 1082 491 233 50 0 chr5 65240737 65240857 -87296402 + B1_Mur1 SINE Alu 5 130 -19 5 1082 576 40 0 0 chr5 65241899 65241974 -87295285 + (TG)n Simple_repeat Simple_repeat 1 75 0 5 1082 406 77 51 0 chr5 65241976 65242054 -87295205 + (CAGAGA)n Simple_repeat Simple_repeat 2 83 0 5 1082 351 0 0 0 chr5 65242122 65242161 -87295098 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1082 315 49 0 0 chr5 65242161 65242201 -87295058 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1082 559 244 0 0 chr5 65242243 65242362 -87294897 - B1_Mur4 SINE Alu -10 140 22 5 1082 339 270 29 29 chr5 65242453 65242556 -87294703 - PB1D10 SINE Alu -11 106 4 5 1082 586 75 21 0 chr5 65242643 65242736 -87294523 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 5 1082 572 301 0 14 chr5 65242760 65242908 -87294351 - RSINE1 SINE B4 -17 148 3 5 1082 386 165 0 12 chr5 65243203 65243283 -87293976 + GA-rich Low_complexity Low_complexity 3 81 0 5 1082 452 332 54 46 chr5 65243289 65243529 -87293730 - Arthur1 DNA Tip100 -3237 710 469 5 1082 650 274 53 16 chr5 65243541 65243730 -87293529 - B3A SINE B2 -2 196 1 5 1082 434 318 77 74 chr5 65244028 65244313 -87292946 - Arthur1 DNA Tip100 -3473 474 189 5 1082 369 0 0 0 chr5 65244807 65244848 -87292411 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1082 401 235 46 115 chr5 65244960 65245090 -87292169 - RSINE1 SINE B4 -29 136 16 5 1082 26 0 0 0 chr5 65245118 65245144 -87292115 + AT_rich Low_complexity Low_complexity 1 26 0 5 1082 264 137 0 0 chr5 65245219 65245270 -87291989 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1082 776 274 1 24 chr5 65245375 65245603 -87291656 + B3A SINE B2 1 215 -1 5 1082 4566 138 52 11 chr5 65245893 65246001 -87291258 + RLTR25A LTR ERVK 1 115 -988 5 1082 264 30 0 0 chr5 65246001 65246034 -87291225 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1082 504 0 0 0 chr5 65246034 65246089 -87291170 + (TA)n Simple_repeat Simple_repeat 1 56 0 5 1082 4566 138 52 11 chr5 65246089 65246794 -87290465 + RLTR25A LTR ERVK 116 845 -258 5 1082 225 218 18 0 chr5 65246975 65247030 -87290229 + U7 snRNA snRNA 6 61 -2 5 1082 885 212 152 4 chr5 65247262 65247499 -87289760 + RLTR25B LTR ERVK 757 1028 0 5 1082 638 253 50 61 chr5 65247502 65247700 -87289559 + B3A SINE B2 3 198 0 5 1082 667 167 53 168 chr5 65247803 65248012 -87289247 - B2_Mm2 SINE B2 -2 193 9 5 1082 468 0 0 0 chr5 65248316 65248368 -87288891 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 5 1082 186 43 0 0 chr5 65248368 65248391 -87288868 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1082 1187 48 0 7 chr5 65248400 65248546 -87288713 - B1_Mm SINE Alu -2 145 1 5 1082 549 168 9 45 chr5 65248563 65248675 -87288584 - B1_Mur1 SINE Alu 0 149 42 5 1082 356 325 0 0 chr5 65248678 65248847 -87288412 + C-rich Low_complexity Low_complexity 1 169 0 5 1082 1192 157 276 58 chr5 65248967 65249274 -87287985 + ORR1D1 LTR MaLR 1 374 0 5 1082 246 211 62 50 chr5 65249616 65249696 -87287563 - MER34A1 LTR ERV1 -444 143 63 5 1082 2635 175 37 26 chr5 65249706 65250276 -87286983 - RLTR20B3 LTR ERVK -1 576 1 5 1082 1492 248 78 35 chr5 65250436 65250899 -87286360 + RCHARR1 DNA MER1_type 1 483 -491 5 1082 22 0 0 0 chr5 65250899 65250921 -87286338 + AT_rich Low_complexity Low_complexity 1 22 0 5 1082 427 205 0 0 chr5 65250931 65251008 -87286251 + B1_Mur3 SINE Alu 8 84 -65 5 1082 748 132 152 7 chr5 65251008 65251153 -87286106 + ORR1B2 LTR MaLR 4 169 -198 5 1082 510 150 0 0 chr5 65251153 65251273 -87285986 + (TC)n Simple_repeat Simple_repeat 2 121 0 5 1082 812 209 110 0 chr5 65251273 65251464 -87285795 + ORR1B2 LTR MaLR 156 367 0 5 1082 268 180 16 32 chr5 65251465 65251528 -87285731 + B1F1 SINE Alu 87 148 -1 5 1082 405 271 187 8 chr5 65251571 65251705 -87285554 - RSINE1 SINE B4 -5 160 3 5 1082 1974 234 12 25 chr5 65251705 65252219 -87285040 + RCHARR1 DNA MER1_type 467 973 -1 5 1082 184 111 44 0 chr5 65252578 65252623 -87284636 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1082 242 250 203 0 chr5 65252660 65252724 -87284535 + L1MEg1 LINE L1 2 78 -6157 5 1082 182 208 159 56 chr5 65252952 65253059 -87284200 + L2a LINE L2 3276 3393 -33 5 1082 281 248 25 99 chr5 65254006 65254127 -87283132 + RMER30 DNA MER1_type 90 201 -1 5 1082 347 100 17 0 chr5 65254218 65254278 -87282981 - L1Md_F2 LINE L1 -2 6580 6520 5 1082 260 86 0 0 chr5 65254278 65254313 -87282946 - ORR1A3 LTR MaLR -199 127 93 5 1082 7327 81 10 2 chr5 65254315 65255281 -87281978 - L1Md_F2 LINE L1 0 6582 5609 5 1082 1379 70 16 11 chr5 65255605 65255794 -87281465 + B2_Mm2 SINE B2 1 190 -5 5 1082 182 351 59 42 chr5 65256632 65256751 -87280508 - MIRm SINE MIR -106 170 50 5 1082 437 323 8 8 chr5 65256843 65256974 -87280285 - MLT1A0 LTR MaLR 0 365 235 5 1082 526 101 162 18 chr5 65257253 65257364 -87279895 + B1_Mus1 SINE Alu 13 139 -9 5 1082 776 220 220 0 chr5 65257377 65257554 -87279705 + B3 SINE B2 1 216 0 5 1082 209 299 156 52 chr5 65258161 65258334 -87278925 + MIRb SINE MIR 7 197 -71 5 1082 193 289 88 49 chr5 65259043 65259145 -87278114 + L2a LINE L2 3321 3426 0 5 1082 228 310 0 27 chr5 65259145 65259218 -87278041 + (TGGA)n Simple_repeat Simple_repeat 2 72 0 5 1082 777 227 159 69 chr5 65259235 65259581 -87277678 - MTE2b LTR MaLR -2 377 1 5 1082 468 0 0 0 chr5 65259611 65259663 -87277596 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1082 238 336 45 8 chr5 65259840 65259972 -87277287 + ORR1E LTR MaLR 1 137 -222 5 1082 220 287 245 0 chr5 65260216 65260310 -87276949 - MIRb SINE MIR -93 175 59 5 1082 269 335 55 87 chr5 65260458 65260641 -87276618 - MLT1J1 LTR MaLR -265 179 3 5 1082 311 323 20 10 chr5 65260993 65261093 -87276166 - PB1D10 SINE Alu -10 107 7 5 1082 205 397 86 8 chr5 65261094 65261211 -87276048 + MIRb SINE MIR 59 184 -84 5 1082 301 187 0 36 chr5 65261458 65261535 -87275724 + B1_Mur4 SINE Alu 6 79 -69 5 1082 285 12 0 134 chr5 65261547 65261644 -87275615 + (GGGAGA)n Simple_repeat Simple_repeat 4 87 0 5 1082 507 141 121 0 chr5 65261644 65261743 -87275516 + B1_Mus2 SINE Alu 39 150 0 5 1082 324 275 95 40 chr5 65261749 65261851 -87275408 - RLTR20C LTR ERVK 0 578 477 5 1082 540 0 0 0 chr5 65261851 65261911 -87275348 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1082 324 275 95 40 chr5 65261911 65261956 -87275303 - RLTR20C LTR ERVK -102 476 424 5 1082 448 187 41 128 chr5 65261972 65262116 -87275143 - RLTR20C LTR ERVK -261 273 147 5 1082 2525 140 50 145 chr5 65262116 65262513 -87274746 - RLTR31_Mm LTR ERVK 0 561 167 5 1082 239 0 0 31 chr5 65262513 65262545 -87274714 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1082 2525 140 50 145 chr5 65262545 65262767 -87274492 - RLTR31_Mm LTR ERVK -395 166 1 5 1082 448 187 41 128 chr5 65262767 65262818 -87274441 - RLTR20C LTR ERVK -388 146 95 5 1082 2950 37 3 5 chr5 65263072 65263456 -87273803 + MTA_Mm LTR MaLR 3 385 -11 5 1082 643 37 0 0 chr5 65263577 65263658 -87273601 + MTA_Mm LTR MaLR 316 396 0 5 1082 833 168 152 49 chr5 65265111 65265488 -87271771 - MT2A LTR ERVL -165 328 1 5 1082 2235 231 84 29 chr5 65265488 65266140 -87271119 + ORR1D-int LTR MaLR 128 815 -555 5 1082 1488 197 76 101 chr5 65266124 65266530 -87270729 - RLTR18B LTR ERVK -53 459 64 5 1082 676 194 39 33 chr5 65266537 65266718 -87270541 - RMER13B LTR ERVK -722 186 5 5 1082 492 72 0 0 chr5 65266729 65266798 -87270461 + URR1B DNA MER1_type 157 225 0 6 1082 251 247 74 21 chr5 65266798 65266821 -87270438 - CYRA11_Mm Unknown Y-chromosome -371 243 147 6 1082 351 285 17 17 chr5 65266995 65267170 -87270089 + (CA)n Simple_repeat Simple_repeat 2 176 0 6 1082 282 225 21 0 chr5 65267195 65267337 -87269922 + (CA)n Simple_repeat Simple_repeat 2 146 0 6 1082 401 276 86 56 chr5 65268173 65268407 -87268852 + RMER5 LTR ERV1 51 291 -243 6 1082 354 291 44 15 chr5 65268426 65268562 -87268697 + RMER5 LTR ERV1 349 488 -46 6 1082 198 0 0 0 chr5 65269211 65269233 -87268026 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1082 268 197 122 40 chr5 65269851 65269925 -87267334 + MIRb SINE MIR 56 135 -133 6 1082 1994 144 39 17 chr5 65270345 65270704 -87266555 - MTC LTR MaLR -53 368 2 6 1082 796 115 11 44 chr5 65270919 65270966 -87266293 + polypurine Low_complexity Low_complexity 4 48 0 6 1082 1126 50 0 62 chr5 65270966 65271158 -87266101 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 6 1082 796 115 11 44 chr5 65271158 65271292 -87265967 + polypurine Low_complexity Low_complexity 49 179 0 6 1082 384 77 0 0 chr5 65271384 65271436 -87265823 + (TTGG)n Simple_repeat Simple_repeat 4 55 0 6 1082 330 91 0 0 chr5 65272006 65272061 -87265198 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 6 1082 479 239 16 54 chr5 65272414 65272600 -87264659 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1082 569 246 16 0 chr5 65272682 65272804 -87264455 + MTE2a LTR MaLR 206 329 -50 6 1082 212 196 43 0 chr5 65272830 65272876 -87264383 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1082 433 266 24 48 chr5 65272879 65273045 -87264214 - RSINE1 SINE B4 0 165 4 6 1082 558 229 114 6 chr5 65273378 65273536 -87263723 + MTE2b LTR MaLR 202 376 -3 6 135 297 301 155 0 chr5 65273757 65273860 -87263399 + PB1D7 SINE Alu 2 120 0 6 1083 431 106 0 0 chr5 65273990 65274056 -87263203 - PB1D9 SINE Alu -6 114 49 6 1083 374 200 135 39 chr5 65274065 65274169 -87263090 - PB1D10 SINE Alu -3 114 1 6 1083 1072 133 50 0 chr5 65274279 65274460 -87262799 + B2_Mm2 SINE B2 3 192 -3 6 1083 419 97 0 0 chr5 65274526 65274588 -87262671 - B1_Mus2 SINE Alu -4 143 82 6 1083 346 231 13 0 chr5 65275026 65275104 -87262155 - MER5A1 DNA MER1_type -42 124 46 6 1083 180 176 0 0 chr5 65275239 65275273 -87261986 + G-rich Low_complexity Low_complexity 5 38 0 6 1083 578 163 40 7 chr5 65275852 65276000 -87261259 + C-rich Low_complexity Low_complexity 6 158 0 6 1083 595 250 40 6 chr5 65276000 65276177 -87261082 - ID_B1 SINE B4 -41 183 1 6 1083 735 66 0 36 chr5 65276779 65276889 -87260370 + B2_Mm2 SINE B2 2 107 -88 6 1083 292 56 56 0 chr5 65276970 65277024 -87260235 + (TAAAA)n Simple_repeat Simple_repeat 3 59 0 6 1083 558 250 24 0 chr5 65277311 65277435 -87259824 - RSINE1 SINE B4 -36 129 3 6 1083 432 0 0 0 chr5 65277616 65277664 -87259595 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1083 234 326 23 0 chr5 65277799 65277885 -87259374 + B4A SINE B4 17 104 -188 6 1083 423 76 30 0 chr5 65277888 65277954 -87259305 + B1_Mus2 SINE Alu 80 147 0 6 1083 387 0 0 0 chr5 65277965 65278008 -87259251 + (TA)n Simple_repeat Simple_repeat 2 44 0 6 1083 603 263 0 0 chr5 65279338 65279475 -87257784 + B1_Mur1 SINE Alu 1 137 -12 6 1083 319 312 61 20 chr5 65280704 65280851 -87256408 + RSINE1 SINE B4 2 154 -11 6 1083 2259 119 47 51 chr5 65280950 65281419 -87255840 - IAPLTR2_Mm LTR ERVK -8 467 1 6 1083 29448 14 4 0 chr5 65281419 65284644 -87252615 - IAPEz-int LTR ERVK 0 6481 3244 6 1083 24009 11 12 32 chr5 65284636 65287444 -87249815 - IAPEz-int LTR ERVK -3730 2751 1 6 1083 2259 119 47 51 chr5 65287445 65287914 -87249345 - IAPLTR2_Mm LTR ERVK -8 467 1 6 1083 1088 80 0 0 chr5 65288812 65288950 -87248309 + B1_Mus1 SINE Alu 2 139 -9 6 1083 228 86 0 0 chr5 65288950 65288985 -87248274 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1083 267 303 0 13 chr5 65291007 65291084 -87246175 + RSINE1 SINE B4 2 77 -88 6 1083 273 286 140 18 chr5 65291284 65291448 -87245811 + MER96B DNA hAT 52 235 -182 6 1083 460 324 53 40 chr5 65292136 65292361 -87244898 - MIRb SINE MIR 0 268 41 6 1083 928 25 8 0 chr5 65292374 65292495 -87244764 + B1_Mus2 SINE Alu 26 147 0 6 1083 2721 81 53 30 chr5 65292551 65292948 -87244311 - RLTR9E LTR ERVK 0 409 4 6 1083 246 105 0 0 chr5 65293401 65293439 -87243820 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 6 1083 3889 38 31 95 chr5 65293725 65294272 -87242987 - RLTR1B LTR ERV1 0 512 1 6 1083 7640 51 22 110 chr5 65294272 65294621 -87242638 - RLTR1B-int LTR ERV1 0 3299 2937 6 1083 1517 33 60 0 chr5 65294621 65294803 -87242456 + B2_Mm1a SINE B2 1 193 0 6 1083 9521 106 53 56 chr5 65294803 65297214 -87240045 - RLTR1B-int LTR ERV1 -363 2936 1020 6 1083 278 89 16 97 chr5 65297340 65297402 -87239857 - RLTR1B-int LTR ERV1 -2521 778 722 6 1083 1281 70 65 0 chr5 65297554 65297740 -87239519 - RLTR1B-int LTR ERV1 -2838 461 264 6 1083 967 165 148 22 chr5 65297711 65297934 -87239325 - MMERGLN-int LTR ERV1 -7178 378 128 6 1083 1625 126 63 2 chr5 65297909 65298211 -87239048 - RLTR1B-int LTR ERV1 -3024 275 1 6 1083 4263 47 6 2 chr5 65298211 65298721 -87238538 - RLTR1B LTR ERV1 0 512 1 6 1083 812 238 111 67 chr5 65298833 65299238 -87238021 - L1MB4 LINE L1 -60 6120 5698 6 1083 322 179 12 23 chr5 65299705 65299791 -87237468 + G-rich Low_complexity Low_complexity 2 86 0 6 1083 22 35 0 0 chr5 65299847 65299876 -87237383 + AT_rich Low_complexity Low_complexity 1 29 0 6 1083 459 278 92 7 chr5 65300089 65300241 -87237018 - B4A SINE B4 -126 166 2 6 1083 285 257 34 34 chr5 65300246 65300363 -87236896 - PB1D10 SINE Alu 0 117 1 6 1083 440 356 38 17 chr5 65300725 65301014 -87236245 + MER63C DNA AcHobo 17 311 -619 6 1083 180 135 0 0 chr5 65301064 65301101 -87236158 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1083 282 345 81 20 chr5 65301441 65301552 -87235707 + RSINE1 SINE B4 9 124 -41 6 1083 983 139 0 6 chr5 65301552 65301733 -87235526 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1083 282 345 81 20 chr5 65301733 65301769 -87235490 + RSINE1 SINE B4 125 164 -1 6 1083 275 104 0 20 chr5 65301776 65301825 -87235434 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1083 21 57 0 0 chr5 65302150 65302185 -87235074 + AT_rich Low_complexity Low_complexity 1 35 0 6 1083 447 94 0 0 chr5 65302227 65302291 -87234968 - ORR1C2 LTR MaLR -2 382 319 6 1083 298 263 0 0 chr5 65302408 65302484 -87234775 + ID SINE ID 2 77 -147 6 1083 1409 171 21 52 chr5 65302508 65302834 -87234425 - RLTRETN_Mm LTR ERVK 0 322 7 6 1083 8001 137 11 32 chr5 65302846 65304222 -87233037 - MMETn-int LTR ERVK 0 4844 3498 6 1083 6201 144 18 20 chr5 65304218 65305575 -87231684 - MMETn-int LTR ERVK -3306 4100 2356 6 1083 4556 8 0 0 chr5 65305575 65306068 -87231191 - MT2_Mm LTR ERVL 0 493 1 6 1083 2141 147 26 34 chr5 65306068 65306152 -87231107 - MMETn-int LTR ERVK -3595 3811 3724 6 1083 4028 89 5 76 chr5 65306360 65307015 -87230244 - MMETn-int LTR ERVK -2657 2187 1580 6 1083 8338 99 14 49 chr5 65307029 65308350 -87228909 - MMETn-int LTR ERVK -3538 1306 33 6 1083 1324 187 50 3 chr5 65308363 65308663 -87228596 - RLTRETN_Mm LTR ERVK 0 322 9 6 1083 374 198 64 82 chr5 65308706 65308816 -87228443 + ID_B1 SINE B4 116 223 -1 6 1083 201 94 0 0 chr5 65308906 65308938 -87228321 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1083 637 273 0 25 chr5 65309359 65309517 -87227742 - RSINE1 SINE B4 -8 157 4 6 1083 316 311 38 0 chr5 65309620 65309726 -87227533 - L1M5 LINE L1 -445 5679 5570 6 1083 225 341 22 11 chr5 65310027 65310040 -87227219 + B4A SINE B4 75 88 -204 6 1083 380 321 7 0 chr5 65310040 65310155 -87227104 + PB1D7 SINE Alu 4 126 -1 6 1083 1424 203 85 34 chr5 65310609 65310987 -87226272 - MTC LTR MaLR -17 404 8 6 1083 825 73 40 16 chr5 65311166 65311292 -87225967 - L1_Mm LINE L1 -1863 4020 3892 6 1083 6040 93 15 10 chr5 65311290 65312179 -87225080 - MusHAL1 LINE L1 -509 2203 1311 6 1083 8586 88 3 3 chr5 65312165 65314027 -87223232 + L1_Mus3 LINE L1 4777 6638 0 6 1083 328 279 130 35 chr5 65314067 65314297 -87222962 + MLT1C LTR MaLR 163 414 -53 6 1083 377 208 58 19 chr5 65314616 65314719 -87222540 - PB1D10 SINE Alu -10 107 1 6 1083 500 205 51 8 chr5 65314958 65315076 -87222183 - B1_Mur2 SINE Alu -1 148 26 6 1083 761 206 172 11 chr5 65315520 65315706 -87221553 + B3 SINE B2 1 216 0 6 1083 600 224 0 16 chr5 65315709 65315825 -87221434 + B1_Mur3 SINE Alu 24 139 -10 6 1083 527 15 30 0 chr5 65315825 65315892 -87221367 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 6 1083 377 54 18 0 chr5 65318709 65318765 -87218494 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 6 1083 282 95 0 0 chr5 65318809 65318851 -87218408 + (TATG)n Simple_repeat Simple_repeat 2 43 0 6 1083 688 232 58 19 chr5 65318855 65319009 -87218250 - RSINE1 SINE B4 -4 161 2 6 1083 265 259 134 25 chr5 65319035 65319154 -87218105 + MLT1B LTR MaLR 247 378 -12 6 1083 2185 145 75 0 chr5 65319191 65319577 -87217682 + MTC LTR MaLR 6 420 -1 6 1083 204 40 0 0 chr5 65319798 65319823 -87217436 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 6 1083 1201 36 0 0 chr5 65319999 65320137 -87217122 + B1_Mus1 SINE Alu 2 139 -9 6 1083 222 37 0 0 chr5 65320137 65320164 -87217095 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1083 1155 225 138 12 chr5 65320463 65320614 -87216645 - ORR1E LTR MaLR 0 359 172 6 1083 393 22 0 0 chr5 65320614 65320660 -87216599 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1083 1155 225 138 12 chr5 65320660 65320827 -87216432 - ORR1E LTR MaLR -188 171 2 6 1083 489 71 0 0 chr5 65320865 65320935 -87216324 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 6 1083 453 330 90 10 chr5 65321619 65321907 -87215352 + MLT1A0 LTR MaLR 1 311 -54 6 1083 381 86 0 0 chr5 65321911 65321969 -87215290 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1083 319 197 15 0 chr5 65321976 65322042 -87215217 - ID4 SINE ID -16 67 1 6 1083 1440 60 16 16 chr5 65322573 65322759 -87214500 + B2_Mm2 SINE B2 2 187 -8 6 1083 474 228 184 0 chr5 65322787 65322923 -87214336 + RSINE1 SINE B4 3 163 -2 6 1083 239 19 35 86 chr5 65323103 65323161 -87214098 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 6 1083 547 247 13 52 chr5 65323161 65323315 -87213944 - B1F1 SINE Alu 0 149 2 6 1083 609 14 0 0 chr5 65324443 65324513 -87212746 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1083 342 0 0 0 chr5 65324513 65324550 -87212709 + (GA)n Simple_repeat Simple_repeat 2 39 0 6 1083 308 167 0 35 chr5 65325845 65325892 -87211367 + A-rich Low_complexity Low_complexity 1 45 0 6 1083 1241 34 0 0 chr5 65325892 65326039 -87211220 + B1_Mus2 SINE Alu 1 147 0 6 1083 308 167 0 35 chr5 65326039 65326078 -87211181 + A-rich Low_complexity Low_complexity 46 84 0 7 1083 314 22 0 62 chr5 65326090 65326138 -87211121 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1083 1215 201 238 84 chr5 65326199 65326661 -87210598 - MT2A LTR ERVL 0 533 1 7 1083 1396 272 22 22 chr5 65326707 65327068 -87210191 + Lx8 LINE L1 6584 6944 -529 7 1083 22 88 0 0 chr5 65327160 65327217 -87210042 + AT_rich Low_complexity Low_complexity 1 57 0 7 1083 414 39 0 0 chr5 65327247 65327299 -87209960 + (GA)n Simple_repeat Simple_repeat 2 53 0 7 1083 315 0 0 0 chr5 65327299 65327333 -87209926 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1083 402 227 72 41 chr5 65327336 65327478 -87209781 - MER33 DNA MER1_type -86 123 5 7 1083 235 206 48 0 chr5 65327798 65327861 -87209398 - L1M4 LINE L1 -267 5901 5836 7 1083 201 208 0 0 chr5 65327864 65327936 -87209323 + CT-rich Low_complexity Low_complexity 2 73 0 7 1083 249 33 0 0 chr5 65327938 65327968 -87209291 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1083 915 113 21 7 chr5 65327981 65328123 -87209136 - B1_Mur4 SINE Alu 0 150 7 7 1083 475 249 154 16 chr5 65328129 65328421 -87208838 - L1M4 LINE L1 -356 5823 5491 7 1083 2906 217 248 8 chr5 65328416 65329244 -87208015 - RMER1A Other Other -4 1026 1 7 1083 751 208 49 46 chr5 65329273 65329548 -87207711 - RMER1A Other Other -677 353 31 7 1083 1588 107 4 0 chr5 65329551 65329785 -87207474 - ORR1A2 LTR MaLR 0 327 93 7 1083 16636 63 7 2 chr5 65329786 65332583 -87204676 - L1Md_F2 LINE L1 -12 6570 3762 7 1083 3478 38 0 0 chr5 65332583 65332979 -87204280 + MTA_Mm LTR MaLR 1 396 0 7 1083 9568 31 0 0 chr5 65332979 65334077 -87203182 + MTA_Mm-int LTR MaLR 1 1098 0 7 1083 3487 38 0 0 chr5 65334077 65334473 -87202786 + MTA_Mm LTR MaLR 1 396 0 7 1083 23926 101 25 8 chr5 65334473 65337924 -87199335 - L1Md_F2 LINE L1 -2117 3766 244 7 1083 256 150 0 0 chr5 65337925 65337965 -87199294 - ORR1A2 LTR MaLR -218 108 69 7 1083 239 214 0 28 chr5 65338055 65338127 -87199132 + (TTA)n Simple_repeat Simple_repeat 3 72 0 7 1083 469 269 14 29 chr5 65338160 65338298 -87198961 - RSINE1 SINE B4 -28 137 2 7 1083 525 238 149 22 chr5 65338299 65338574 -87198685 - L1M4 LINE L1 -838 5308 4999 7 1083 455 262 18 36 chr5 65338578 65338689 -87198570 - PB1D10 SINE Alu -7 110 2 7 1083 524 250 38 97 chr5 65338689 65338779 -87198480 - ID SINE ID -144 80 2 7 1083 253 176 78 0 chr5 65338803 65338854 -87198405 - L1M4 LINE L1 -1163 4983 4929 7 1083 1683 113 127 0 chr5 65338854 65339137 -87198122 + ORR1A2 LTR MaLR 1 319 -8 7 1083 405 271 25 25 chr5 65339142 65339263 -87197996 - L1M4 LINE L1 -1214 4932 4812 7 1083 22 56 0 0 chr5 65339302 65339338 -87197921 + AT_rich Low_complexity Low_complexity 1 36 0 7 1083 328 194 0 0 chr5 65339354 65339416 -87197843 - B3 SINE B2 -86 130 69 7 1083 493 202 19 9 chr5 65339409 65339514 -87197745 + PB1D10 SINE Alu 11 116 -1 7 1083 727 115 0 0 chr5 65339669 65339773 -87197486 + B3 SINE B2 3 106 -110 7 1083 21 36 0 0 chr5 65339888 65339916 -87197343 + AT_rich Low_complexity Low_complexity 1 28 0 7 1083 316 200 167 20 chr5 65339954 65340056 -87197203 - ORR1A2 LTR MaLR -262 117 1 7 1083 502 150 48 39 chr5 65340121 65340225 -87197034 - RMER20B LTR ERVK -16 611 507 7 1083 1141 219 155 19 chr5 65340265 65340403 -87196856 - RMER20B LTR ERVK -248 379 235 7 1083 3133 39 0 0 chr5 65340403 65340760 -87196499 - IAPEY2_LTR LTR ERVK 0 357 1 7 1083 1141 219 155 19 chr5 65340760 65340937 -87196322 - RMER20B LTR ERVK -393 234 23 7 1083 1281 274 91 36 chr5 65340973 65341410 -87195849 - L1_Rod LINE L1 -302 5545 5092 7 1083 510 17 0 0 chr5 65341410 65341469 -87195790 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1083 333 0 0 0 chr5 65341469 65341505 -87195754 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1083 1281 274 91 36 chr5 65341505 65341659 -87195600 - L1_Rod LINE L1 -756 5091 4928 7 1083 207 0 0 0 chr5 65341659 65341682 -87195577 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1083 1281 274 91 36 chr5 65341682 65341782 -87195477 - L1_Rod LINE L1 -920 4927 4816 7 1083 609 255 7 34 chr5 65341842 65341988 -87195271 - B1_Mur1 SINE Alu 0 149 8 7 1083 36 0 0 0 chr5 65342135 65342171 -87195088 + AT_rich Low_complexity Low_complexity 1 36 0 7 1083 208 143 0 0 chr5 65342606 65342641 -87194618 + (TTTAA)n Simple_repeat Simple_repeat 4 38 0 7 1083 375 168 6 6 chr5 65342993 65343074 -87194185 - B1_Mus1 SINE Alu -3 117 37 7 1083 396 0 0 0 chr5 65343377 65343421 -87193838 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1083 307 343 38 52 chr5 65343442 65343654 -87193605 + LTR81A LTR ERV1? 791 1170 -180 7 1083 278 250 0 14 chr5 65343976 65344049 -87193210 + B4A SINE B4 85 156 -136 7 1083 412 250 0 26 chr5 65343985 65344100 -87193159 + PB1D7 SINE Alu 9 120 0 7 1083 299 342 0 43 chr5 65347439 65347555 -87189704 - MLT1A0 LTR MaLR -254 111 1 7 1083 283 253 130 3 chr5 65347598 65347715 -87189544 - MLT1A1 LTR MaLR -16 392 215 7 1083 331 282 0 0 chr5 65348616 65348687 -87188572 + ID4_ SINE ID 13 83 0 7 1083 421 216 29 43 chr5 65349637 65349777 -87187482 + Lx4B LINE L1 6916 7053 -5 7 1083 207 0 0 0 chr5 65349780 65349803 -87187456 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 7 1083 243 331 204 12 chr5 65349821 65349983 -87187276 + Lx8 LINE L1 7135 7327 -146 7 1083 185 119 24 0 chr5 65351543 65351585 -87185674 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 7 1083 228 214 0 0 chr5 65352428 65352470 -87184789 + (CACG)n Simple_repeat Simple_repeat 4 45 0 7 1083 254 296 28 14 chr5 65352675 65352747 -87184512 + MIRc SINE MIR 75 147 -121 7 1083 288 306 8 21 chr5 65353230 65353358 -87183901 + MLT1D LTR MaLR 336 503 -2 7 1083 272 261 25 0 chr5 65353519 65353597 -87183662 - ID_B1 SINE B4 -133 159 75 7 1083 226 333 154 45 chr5 65354956 65355036 -87182223 + L2 LINE L2 1648 1725 -1694 7 1083 2392 125 23 8 chr5 65355036 65355190 -87182069 + ORR1B1 LTR MaLR 1 159 -235 7 1083 180 0 0 0 chr5 65355190 65355210 -87182049 + (TG)n Simple_repeat Simple_repeat 2 21 0 7 1083 2392 125 23 8 chr5 65355210 65355443 -87181816 + ORR1B1 LTR MaLR 160 394 0 7 1083 226 333 154 45 chr5 65355443 65355758 -87181501 + L2 LINE L2 1726 2085 -1334 7 1083 707 163 8 0 chr5 65355790 65355913 -87181346 - B1_Mur4 SINE Alu -26 124 1 7 1083 540 317 35 38 chr5 65356338 65356627 -87180632 + B4A SINE B4 5 292 0 7 1083 244 277 15 0 chr5 65356629 65356694 -87180565 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1083 1099 210 18 5 chr5 65356993 65357213 -87180046 + ID_B1 SINE B4 2 224 0 7 1083 2502 134 167 2 chr5 65358064 65358514 -87178745 + RLTR11A LTR ERVK 1 524 -4 7 1083 911 172 0 0 chr5 65358589 65358734 -87178525 + B1_Mm SINE Alu 1 145 -2 7 1083 299 298 47 19 chr5 65358975 65359081 -87178178 - B1F SINE Alu 0 149 41 7 1083 435 19 0 0 chr5 65359089 65359141 -87178118 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1083 289 232 48 78 chr5 65359190 65359293 -87177966 + B1F SINE Alu 13 144 -5 7 1083 360 0 0 0 chr5 65359333 65359373 -87177886 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1083 249 180 0 0 chr5 65359398 65359448 -87177811 + (ATG)n Simple_repeat Simple_repeat 2 51 0 7 1083 22 35 0 0 chr5 65359753 65359782 -87177477 + AT_rich Low_complexity Low_complexity 1 29 0 7 1083 1995 85 6 62 chr5 65360132 65360457 -87176802 - ORR1A2 LTR MaLR -8 319 13 7 1083 566 178 85 0 chr5 65360685 65360803 -87176456 + B1_Mus1 SINE Alu 1 128 -20 7 1083 189 171 0 0 chr5 65360815 65360850 -87176409 + (CACCC)n Simple_repeat Simple_repeat 2 36 0 7 1083 225 0 0 0 chr5 65360862 65360887 -87176372 + (GGGGA)n Simple_repeat Simple_repeat 2 26 0 7 1083 210 254 0 17 chr5 65361226 65361286 -87175973 + (CAGGG)n Simple_repeat Simple_repeat 5 63 0 7 1083 192 163 0 0 chr5 65361548 65361591 -87175668 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1083 204 208 0 0 chr5 65362440 65362488 -87174771 + G-rich Low_complexity Low_complexity 1 48 0 7 1083 889 157 8 175 chr5 65363004 65363244 -87174015 - B3 SINE B2 -16 200 1 7 1083 275 287 101 6 chr5 65363444 65363612 -87173647 - Charlie18a DNA MER1_type -85 257 74 7 1083 414 247 7 0 chr5 65363947 65364079 -87173180 - ID4 SINE ID -18 134 1 7 1083 908 239 41 23 chr5 65364604 65364822 -87172437 + ID_B1 SINE B4 2 223 -1 7 1083 301 266 8 99 chr5 65365873 65365994 -87171265 + MT2B LTR ERVL 154 263 -338 7 1083 682 204 36 21 chr5 65365892 65366032 -87171227 + B1_Mur1 SINE Alu 8 149 0 7 1083 194 160 20 0 chr5 65366170 65366220 -87171039 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1083 30 27 0 0 chr5 65367138 65367175 -87170084 + AT_rich Low_complexity Low_complexity 1 37 0 7 1083 638 247 78 30 chr5 65367400 65367726 -87169533 - MERVL_2A-int LTR ERVL -4034 1727 1195 7 1083 320 198 297 0 chr5 65368121 65368232 -87169027 + MIRb SINE MIR 119 262 -6 7 1083 2163 289 62 12 chr5 65368296 65369017 -87168242 - Lx9 LINE L1 -24 7620 6864 7 1083 750 117 8 8 chr5 65369146 65369267 -87167992 + B1_Mus1 SINE Alu 28 148 0 7 1083 471 113 0 0 chr5 65369274 65369345 -87167914 + (GGGA)n Simple_repeat Simple_repeat 2 72 0 7 1083 1047 112 11 11 chr5 65369345 65369525 -87167734 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 7 1083 219 69 0 0 chr5 65369994 65370023 -87167236 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 7 1083 240 170 0 0 chr5 65370115 65370168 -87167091 + T-rich Low_complexity Low_complexity 1 53 0 7 1083 769 306 36 96 chr5 65370317 65370794 -87166465 - MLT1D LTR MaLR -31 474 27 7 1083 375 23 0 0 chr5 65371458 65371502 -87165757 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1083 304 281 11 2 chr5 65371689 65371781 -87165478 - ID4 SINE ID -59 93 3 7 1083 193 375 73 0 chr5 65372063 65372199 -87165060 - MIRb SINE MIR -6 262 117 7 1083 486 202 29 48 chr5 65372498 65372602 -87164657 - PB1D10 SINE Alu -7 110 9 7 1083 219 360 0 0 chr5 65372854 65372954 -87164305 + MIR3 SINE MIR 82 181 -27 7 1083 181 311 0 47 chr5 65373013 65373077 -87164182 + L3 LINE CR1 4302 4362 -127 7 1083 562 214 39 52 chr5 65373081 65373234 -87164025 + RMER30 DNA MER1_type 10 160 -42 7 1083 194 333 12 0 chr5 65373446 65373530 -87163729 - MER5B DNA MER1_type -7 171 87 7 1083 562 246 204 6 chr5 65374067 65374239 -87163020 + ID_B1 SINE B4 3 208 -16 8 1083 471 18 0 0 chr5 65374268 65374324 -87162935 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1083 2276 82 3 0 chr5 65374518 65374836 -87162423 - ORR1A2 LTR MaLR -8 319 1 8 1083 1375 305 97 12 chr5 65374906 65375473 -87161786 - Lx8 LINE L1 0 7473 6859 8 1083 1124 89 7 0 chr5 65375568 65375714 -87161545 + B1_Mm SINE Alu 1 147 0 8 1083 1997 249 101 34 chr5 65375874 65376518 -87160741 + Lx8 LINE L1 6125 6811 -662 8 1083 279 0 0 0 chr5 65376774 65376805 -87160454 + (CAA)n Simple_repeat Simple_repeat 3 33 0 8 1083 259 335 29 77 chr5 65377242 65377449 -87159810 - ORR1E LTR MaLR -45 314 118 8 1083 383 149 0 13 chr5 65378095 65378170 -87159089 + (TG)n Simple_repeat Simple_repeat 1 74 0 8 1083 723 332 32 14 chr5 65378190 65378471 -87158788 - B4A SINE B4 -6 286 1 8 1083 333 0 0 0 chr5 65378689 65378726 -87158533 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1083 1710 221 31 62 chr5 65378726 65378828 -87158431 + MTD LTR MaLR 5 97 -322 8 1083 973 125 200 22 chr5 65378828 65379008 -87158251 + B3 SINE B2 1 212 -4 8 1083 1710 221 31 62 chr5 65379008 65379325 -87157934 + MTD LTR MaLR 98 411 -8 8 1083 442 149 261 9 chr5 65379447 65379562 -87157697 + B1_Mur2 SINE Alu 3 146 -3 8 1083 269 288 117 58 chr5 65379768 65380008 -87157251 - LTR82A LTR ERVL -156 716 463 8 1083 677 268 19 0 chr5 65380042 65380199 -87157060 - RSINE1 SINE B4 0 165 6 8 1083 716 331 75 11 chr5 65380220 65380593 -87156666 - LTR82A LTR ERVL -475 397 1 8 1083 305 263 68 26 chr5 65380939 65381056 -87156203 + MLT1A1 LTR MaLR 268 389 -19 8 1083 193 376 46 0 chr5 65381117 65381226 -87156033 - L2 LINE L2 -1339 2080 1967 8 1083 223 333 14 0 chr5 65382556 65382625 -87154634 - ID4 SINE ID -13 70 1 8 1083 1308 178 9 0 chr5 65382902 65383116 -87154143 - B3 SINE B2 0 216 1 8 1083 459 0 0 0 chr5 65383378 65383429 -87153830 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1083 438 290 56 8 chr5 65383431 65383556 -87153703 - RSINE1 SINE B4 -29 136 6 8 1083 209 223 227 54 chr5 65384340 65384484 -87152775 - MIRb SINE MIR -90 186 19 8 1083 255 125 0 0 chr5 65385228 65385268 -87151991 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1083 539 39 0 25 chr5 65385268 65385347 -87151912 + (CAGAGA)n Simple_repeat Simple_repeat 6 82 0 8 1083 2633 91 30 2 chr5 65385397 65385803 -87151456 - BGLII_Mus LTR ERVK -5 417 1 8 1083 31 44 0 0 chr5 65386006 65386051 -87151208 + AT_rich Low_complexity Low_complexity 1 45 0 8 1083 2153 54 11 11 chr5 65386052 65386331 -87150928 - L1Md_F2 LINE L1 -11 6571 6293 8 1083 274 328 31 8 chr5 65387256 65387385 -87149874 - MIR SINE MIR -41 221 90 8 1083 411 83 0 0 chr5 65387508 65387568 -87149691 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1083 513 223 18 9 chr5 65387568 65387674 -87149585 - PB1D10 SINE Alu -7 110 4 8 1083 1017 257 9 0 chr5 65388128 65388342 -87148917 - MTE2b LTR MaLR -1 378 163 8 1083 476 273 16 0 chr5 65388382 65388503 -87148756 - RSINE1 SINE B4 -40 125 3 8 1083 778 206 26 189 chr5 65388503 65388721 -87148538 - MTE2b LTR MaLR -198 181 1 8 1083 273 283 87 0 chr5 65388905 65388997 -87148262 - ORR1E LTR MaLR -4 355 256 8 1083 1478 64 0 16 chr5 65389765 65389955 -87147304 + B2_Mm2 SINE B2 1 187 -8 8 1083 261 83 0 0 chr5 65390851 65390887 -87146372 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 8 1083 252 141 0 15 chr5 65390936 65391001 -87146258 - MT2A LTR ERVL -3 530 467 8 1083 308 161 16 0 chr5 65391028 65391090 -87146169 + (TA)n Simple_repeat Simple_repeat 2 64 0 8 1083 1048 199 100 94 chr5 65391099 65391536 -87145723 - MT2A LTR ERVL -57 544 2 8 1083 1391 261 44 17 chr5 65392414 65392827 -87144432 + L1MB2 LINE L1 5607 6030 -141 8 1083 409 363 46 21 chr5 65393557 65393751 -87143508 + MIR SINE MIR 2 200 -62 8 1083 191 383 9 53 chr5 65393784 65393897 -87143362 - MIRb SINE MIR -92 176 69 8 1083 328 30 60 15 chr5 65394051 65394118 -87143141 + (TTTTG)n Simple_repeat Simple_repeat 2 71 0 8 1083 482 231 102 0 chr5 65394718 65394826 -87142433 - ID_B1 SINE B4 -4 220 102 8 1083 857 307 12 40 chr5 65395498 65395746 -87141513 - B4 SINE B4 -1 291 51 8 1083 235 257 51 103 chr5 65396386 65396542 -87140717 + YREP_Mm Unknown Unknown 146 293 -1519 8 1083 599 203 40 16 chr5 65396420 65396545 -87140714 - B1F SINE Alu -1 148 21 8 1083 191 196 130 0 chr5 65396824 65396870 -87140389 - MIRm SINE MIR -138 138 87 8 1083 21 0 0 0 chr5 65398460 65398481 -87138778 + AT_rich Low_complexity Low_complexity 1 21 0 8 1083 690 244 0 89 chr5 65398494 65398674 -87138585 - RSINE1 SINE B4 0 165 2 8 1083 490 314 65 92 chr5 65398904 65399272 -87137987 - ORR1E LTR MaLR 0 359 2 8 1083 408 287 51 14 chr5 65400709 65400847 -87136412 + MIR SINE MIR 58 200 -62 8 1083 357 304 39 81 chr5 65401358 65401616 -87135643 - LTR16B2 LTR ERVL -6 456 210 8 1083 357 296 123 31 chr5 65401618 65401813 -87135446 + L1MA5 LINE L1 6082 6294 -6 8 1083 742 202 33 117 chr5 65401831 65402044 -87135215 + B3A SINE B2 4 198 0 8 1083 205 323 170 26 chr5 65402244 65402438 -87134821 - L2 LINE L2 -684 2735 2514 8 1083 397 298 103 88 chr5 65402454 65402785 -87134474 - ORR1E LTR MaLR -4 355 20 8 1083 213 239 22 0 chr5 65403737 65403783 -87133476 + ID4 SINE ID 32 78 -5 8 1083 233 310 0 0 chr5 65403791 65403849 -87133410 + G-rich Low_complexity Low_complexity 4 61 0 8 1083 335 225 116 8 chr5 65404072 65404193 -87133066 - B2_Mm2 SINE B2 -15 180 47 8 1083 1226 124 6 0 chr5 65404229 65404407 -87132852 - B2_Mm1t SINE B2 -13 180 2 8 1083 232 281 146 58 chr5 65404444 65404546 -87132713 + RMER10B LTR ERVL 8 96 -302 8 1083 426 20 0 0 chr5 65404546 65404597 -87132662 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1083 232 281 146 58 chr5 65404597 65404755 -87132504 + RMER10B LTR ERVL 97 290 -108 8 135 736 177 12 6 chr5 65404770 65404935 -87132324 + CT-rich Low_complexity Low_complexity 5 170 0 8 1084 1927 179 56 112 chr5 65405030 65405496 -87131763 - RLTR41 LTR ERV1 -6 440 1 8 1084 222 118 0 0 chr5 65405708 65405742 -87131517 + (A)n Simple_repeat Simple_repeat 1 34 0 8 1084 1742 216 31 49 chr5 65405816 65406263 -87130996 - Lx9 LINE L1 0 7644 7206 8 1084 794 222 74 0 chr5 65406263 65406425 -87130834 + Lx9 LINE L1 6593 6766 -878 8 1084 684 222 0 29 chr5 65407344 65407483 -87129776 + RSINE1 SINE B4 2 136 -29 8 1084 354 271 13 114 chr5 65407527 65407685 -87129574 - LTR37A LTR ERV1 -2 424 283 8 1084 300 293 37 0 chr5 65407746 65407828 -87129431 - LTR37A LTR ERV1 -250 176 92 8 1084 226 265 83 66 chr5 65407997 65408042 -87129217 + MIRb SINE MIR 138 177 -91 8 1084 1423 75 16 0 chr5 65408042 65408230 -87129029 - B2_Mm1a SINE B2 0 193 3 8 1084 226 265 83 66 chr5 65408230 65408305 -87128954 + MIRb SINE MIR 178 260 -8 8 1084 265 265 0 81 chr5 65408496 65408514 -87128745 - ID_B1 SINE B4 -63 161 94 8 1084 313 214 18 0 chr5 65408514 65408570 -87128689 - PB1D7 SINE Alu -51 69 13 8 1084 291 261 124 50 chr5 65408635 65408796 -87128463 - ORR1E LTR MaLR -167 192 20 8 1084 382 322 7 7 chr5 65409125 65409278 -87127981 + L1MA7 LINE L1 6109 6261 -30 8 1084 480 234 43 7 chr5 65409455 65409593 -87127666 + B1F SINE Alu 5 147 -2 8 1084 25 51 0 0 chr5 65409663 65409702 -87127557 + AT_rich Low_complexity Low_complexity 1 39 0 8 1084 396 261 126 0 chr5 65409702 65409821 -87127438 + RSINE1 SINE B4 3 136 -29 8 1084 300 53 0 0 chr5 65409824 65409862 -87127397 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 8 1084 225 283 0 32 chr5 65409910 65409972 -87127287 + ID2 SINE ID 21 80 -3 8 1084 234 295 93 54 chr5 65410089 65410218 -87127041 - MER115 DNA Tip100 -74 619 486 8 1084 273 269 57 27 chr5 65410647 65410741 -87126518 + B3A SINE B2 4 96 -120 8 1084 941 171 30 0 chr5 65411711 65411875 -87125384 - URR1A DNA MER1_type 0 226 58 8 1084 338 304 66 25 chr5 65411875 65411901 -87125358 + CYRA11_Mm Unknown Y-chromosome 197 369 -248 8 1084 330 26 0 0 chr5 65411978 65412017 -87125242 + (TA)n Simple_repeat Simple_repeat 1 39 0 8 1084 585 69 0 0 chr5 65412017 65412103 -87125156 + (GA)n Simple_repeat Simple_repeat 2 88 0 8 1084 213 226 0 0 chr5 65412103 65412156 -87125103 + (TA)n Simple_repeat Simple_repeat 2 54 0 8 1084 225 332 169 3 chr5 65412160 65412364 -87124895 - MIR SINE MIR -5 263 10 8 1084 481 276 52 0 chr5 65412485 65412601 -87124658 + B1F SINE Alu 7 128 -21 8 1084 1486 187 35 156 chr5 65413640 65413794 -87123465 - ORR1D1 LTR MaLR -1 373 210 8 1084 1188 35 0 0 chr5 65413794 65413939 -87123320 + (GGGAGA)n Simple_repeat Simple_repeat 3 147 0 8 1084 1486 187 35 156 chr5 65413939 65414208 -87123051 - ORR1D1 LTR MaLR -165 209 1 8 1084 192 298 56 127 chr5 65414552 65414694 -87122565 + MIRb SINE MIR 137 268 0 8 1084 673 275 57 53 chr5 65415341 65415616 -87121643 + B4 SINE B4 2 292 0 8 1084 1128 75 23 20 chr5 65415664 65415973 -87121286 + (CA)n Simple_repeat Simple_repeat 1 310 0 8 1084 21 57 0 0 chr5 65416333 65416368 -87120891 + AT_rich Low_complexity Low_complexity 1 35 0 8 1084 531 0 0 0 chr5 65417438 65417497 -87119762 + (TC)n Simple_repeat Simple_repeat 1 59 0 8 1084 272 284 60 22 chr5 65417707 65417847 -87119412 + L2a LINE L2 2937 3081 -345 8 1084 183 80 0 0 chr5 65417949 65417974 -87119285 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1084 875 269 78 0 chr5 65418125 65418370 -87118889 - MLT1A0 LTR MaLR -2 363 100 8 1084 512 42 14 0 chr5 65418668 65418739 -87118520 + (GTTTG)n Simple_repeat Simple_repeat 2 73 0 8 1084 843 194 0 7 chr5 65418739 65418884 -87118375 - B1_Mur4 SINE Alu -2 148 5 9 1084 25 75 0 0 chr5 65418892 65418945 -87118314 + AT_rich Low_complexity Low_complexity 1 53 0 9 1084 206 323 91 15 chr5 65418982 65419114 -87118145 - L2c LINE L2 -2 3385 3244 9 1084 236 327 29 19 chr5 65420323 65420426 -87116833 - MamGypLTR1c LTR Gypsy -654 149 46 9 1084 225 268 0 0 chr5 65421375 65421431 -87115828 + GA-rich Low_complexity Low_complexity 1 56 0 9 1084 324 0 0 0 chr5 65422069 65422105 -87115154 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1084 649 254 112 15 chr5 65422138 65422334 -87114925 - B4A SINE B4 -77 215 1 9 1084 316 343 42 35 chr5 65422608 65422750 -87114509 + RMER12 LTR ERVK 714 856 -466 9 1084 614 243 6 0 chr5 65422780 65422957 -87114302 + (TG)n Simple_repeat Simple_repeat 1 178 0 9 1084 303 93 0 0 chr5 65423542 65423585 -87113674 + (TA)n Simple_repeat Simple_repeat 2 44 0 9 1084 192 77 0 0 chr5 65423753 65423779 -87113480 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1084 267 239 70 0 chr5 65424250 65424321 -87112938 + ID4 SINE ID 2 77 -6 9 1084 313 300 73 0 chr5 65424331 65424441 -87112818 + B4A SINE B4 2 119 -173 9 1084 305 263 0 57 chr5 65424937 65425042 -87112217 + PB1D10 SINE Alu 3 101 -16 9 1084 188 167 21 0 chr5 65425120 65425168 -87112091 + (CATG)n Simple_repeat Simple_repeat 2 50 0 9 1084 723 266 124 38 chr5 65426277 65426543 -87110716 + B4A SINE B4 2 290 -2 9 1084 1076 62 0 0 chr5 65426980 65427109 -87110150 - B1_Mus2 SINE Alu -16 131 3 9 1084 230 220 32 48 chr5 65427622 65427684 -87109575 - MER70B LTR ERVL -477 101 41 9 1084 488 274 40 40 chr5 65427889 65428041 -87109218 - MER5A1 DNA MER1_type -1 165 14 9 1084 781 230 9 71 chr5 65429021 65429232 -87108027 + B3A SINE B2 1 198 0 9 1084 1193 62 0 0 chr5 65429239 65429385 -87107874 + B1_Mus2 SINE Alu 1 146 -1 9 1084 215 244 0 0 chr5 65429455 65429496 -87107763 + B1F1 SINE Alu 15 55 -94 9 1084 232 313 24 80 chr5 65429668 65429793 -87107466 + MIR SINE MIR 71 188 -74 9 1084 369 0 0 0 chr5 65430116 65430157 -87107102 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1084 343 257 0 0 chr5 65430994 65431064 -87106195 + PB1D10 SINE Alu 37 106 -11 9 1084 965 101 7 0 chr5 65431571 65431709 -87105550 + B2_Mm2 SINE B2 2 140 -55 9 1084 279 0 0 0 chr5 65431712 65431743 -87105516 + (TA)n Simple_repeat Simple_repeat 1 31 0 9 1084 250 26 51 0 chr5 65431745 65431784 -87105475 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 1084 553 188 10 0 chr5 65432436 65432532 -87104727 - B1_Mur2 SINE Alu -52 97 1 9 1084 661 196 156 0 chr5 65433364 65433537 -87103722 + B4A SINE B4 4 203 -89 9 1084 1274 95 25 6 chr5 65433537 65433814 -87103445 + ORR1A3 LTR MaLR 1 321 -8 9 1084 685 224 30 0 chr5 65433967 65434101 -87103158 + ID_B1 SINE B4 80 217 -7 9 1084 263 249 89 179 chr5 65435060 65435295 -87101964 - ORR1E LTR MaLR -120 239 26 9 1084 1183 50 0 0 chr5 65435339 65435478 -87101781 + B1_Mus1 SINE Alu 1 139 -9 9 1084 1044 84 36 0 chr5 65435478 65435645 -87101614 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 9 1084 227 79 26 0 chr5 65436602 65436640 -87100619 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 9 1084 450 0 0 0 chr5 65437549 65437599 -87099660 + (T)n Simple_repeat Simple_repeat 1 50 0 9 1084 204 329 29 0 chr5 65437691 65437761 -87099498 - MIRb SINE MIR -24 244 173 9 1084 2178 108 9 104 chr5 65437762 65438215 -87099044 - RMER17C LTR ERVK 0 410 1 9 1084 401 306 48 8 chr5 65438231 65438356 -87098903 - MIR SINE MIR -99 163 34 9 1084 225 0 0 0 chr5 65438859 65438884 -87098375 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1084 359 338 52 28 chr5 65438987 65439200 -87098059 - MIR SINE MIR 0 262 45 9 1084 916 79 55 0 chr5 65439659 65439786 -87097473 + B1_Mus1 SINE Alu 6 139 -9 9 1084 216 0 0 0 chr5 65439786 65439810 -87097449 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1084 2096 144 3 32 chr5 65439831 65440204 -87097055 + RLTR11B LTR ERVK 1 362 -91 9 1084 188 349 118 0 chr5 65440226 65440421 -87096838 + L2a LINE L2 3206 3423 -3 9 1084 1054 167 79 20 chr5 65440755 65440957 -87096302 - B3 SINE B2 -2 214 1 9 1084 731 265 54 82 chr5 65441997 65442387 -87094872 - MTEa LTR MaLR 0 379 1 9 1084 689 272 5 59 chr5 65442878 65443081 -87094178 + B3A SINE B2 7 198 0 9 1084 1010 253 26 90 chr5 65443099 65443486 -87093773 - Lx8 LINE L1 -2 7471 7110 9 1084 396 0 0 0 chr5 65444006 65444050 -87093209 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1084 2929 67 47 3 chr5 65444386 65444773 -87092486 + MTB_Mm LTR MaLR 1 404 -3 9 1084 244 340 127 32 chr5 65445206 65445364 -87091895 - B4A SINE B4 -119 173 1 9 1084 228 67 0 0 chr5 65445555 65445585 -87091674 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1084 633 213 62 28 chr5 65445633 65445839 -87091420 + B3 SINE B2 11 216 0 9 1084 531 112 0 0 chr5 65445909 65445989 -87091270 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 9 1084 741 148 78 8 chr5 65445989 65446118 -87091141 - B1_Mur2 SINE Alu -11 138 1 9 1084 712 244 53 37 chr5 65446294 65446481 -87090778 + B3 SINE B2 5 194 -22 9 1084 1909 182 83 77 chr5 65446481 65447012 -87090247 + RLTR20C LTR ERVK 1 534 0 9 1084 304 273 143 18 chr5 65447332 65447444 -87089815 + B4 SINE B4 4 129 -163 9 1084 408 263 8 42 chr5 65447457 65447576 -87089683 + B3A SINE B2 68 182 -16 9 1084 258 250 0 0 chr5 65447576 65447640 -87089619 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 1084 360 164 15 15 chr5 65448601 65448691 -87088568 + BC1_Mm scRNA scRNA 2 91 -61 9 1084 2196 163 11 21 chr5 65448779 65449161 -87088098 - ORR1C1 LTR MaLR 0 378 1 9 1084 360 0 0 0 chr5 65450130 65450170 -87087089 + (TAA)n Simple_repeat Simple_repeat 2 41 0 9 1084 2484 184 69 6 chr5 65451194 65451687 -87085572 + RLTR11A2 LTR ERVK 1 524 -3 9 1084 336 77 0 0 chr5 65451976 65452028 -87085231 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1084 23 0 0 0 chr5 65452525 65452548 -87084711 + AT_rich Low_complexity Low_complexity 1 23 0 9 1084 381 22 0 0 chr5 65452703 65452749 -87084510 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 1084 477 0 0 0 chr5 65452814 65452867 -87084392 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 9 1084 404 37 0 18 chr5 65452912 65452967 -87084292 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1084 720 270 6 0 chr5 65453048 65453211 -87084048 - RSINE1 SINE B4 0 165 2 9 1084 746 246 99 9 chr5 65453211 65453421 -87083838 - B4A SINE B4 -62 230 2 9 1084 963 293 164 24 chr5 65456927 65457420 -87079839 + MLT1E1A LTR MaLR 119 680 0 9 1084 417 167 0 0 chr5 65458607 65458685 -87078574 + (CATA)n Simple_repeat Simple_repeat 3 80 0 9 1084 574 216 70 57 chr5 65458783 65458940 -87078319 - B4 SINE B4 -6 286 128 9 1084 249 143 0 0 chr5 65460425 65460467 -87076792 + B3A SINE B2 3 44 -154 9 1084 414 0 0 0 chr5 65460532 65460578 -87076681 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 9 1084 818 193 0 0 chr5 65460578 65460714 -87076545 - B1_Mur2 SINE Alu -11 138 3 9 1084 331 215 16 38 chr5 65462408 65462495 -87074764 + PB1D10 SINE Alu 14 101 -48 9 1084 450 0 0 0 chr5 65462496 65462546 -87074713 + (TC)n Simple_repeat Simple_repeat 1 50 0 9 1084 360 0 0 0 chr5 65462546 65462586 -87074673 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1084 186 133 0 0 chr5 65462588 65462618 -87074641 + (GGGAGA)n Simple_repeat Simple_repeat 2 31 0 9 1084 321 262 17 101 chr5 65462650 65462769 -87074490 + PB1D10 SINE Alu 1 109 -8 9 1084 270 227 0 85 chr5 65462779 65462861 -87074398 + ID4 SINE ID 7 81 -2 9 1084 526 146 22 0 chr5 65463616 65463705 -87073554 + PB1D10 SINE Alu 9 99 -18 9 1084 540 184 0 66 chr5 65463849 65463957 -87073302 + PB1D9 SINE Alu 5 107 -13 9 1084 189 0 0 0 chr5 65463957 65463978 -87073281 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 9 1084 540 184 0 66 chr5 65463978 65463991 -87073268 + PB1D9 SINE Alu 108 118 -2 9 1084 406 226 50 1 chr5 65464596 65464713 -87072546 - MTD LTR MaLR -15 404 256 9 1084 30 0 0 0 chr5 65465110 65465140 -87072119 + AT_rich Low_complexity Low_complexity 1 30 0 9 1084 267 306 28 101 chr5 65465210 65465319 -87071940 + RSINE1 SINE B4 65 165 0 9 1084 21 0 0 0 chr5 65466418 65466439 -87070820 + AT_rich Low_complexity Low_complexity 1 21 0 9 1084 233 230 95 0 chr5 65467159 65467233 -87070026 + PB1D10 SINE Alu 30 110 -7 9 1084 323 237 13 0 chr5 65467356 65467432 -87069827 - MLT1C LTR MaLR -199 268 192 9 1084 551 314 60 0 chr5 65467537 65467722 -87069537 - B4A SINE B4 -95 197 2 9 1084 469 254 88 44 chr5 65467722 65467899 -87069360 - MLT1C LTR MaLR -282 185 1 9 1084 1220 35 0 0 chr5 65468618 65468761 -87068498 + B1_Mus2 SINE Alu 5 147 0 9 1084 648 240 49 79 chr5 65468767 65468934 -87068325 + L1M3 LINE L1 5166 5330 -982 9 1084 544 242 8 0 chr5 65468934 65469054 -87068205 + PB1 SINE Alu 4 124 -3 9 1084 648 311 69 81 chr5 65469054 65469508 -87067751 + L1M3 LINE L1 5331 5782 -530 9 1084 811 160 29 35 chr5 65469531 65469707 -87067552 + B3 SINE B2 9 182 -34 9 1084 450 0 0 0 chr5 65469707 65469757 -87067502 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1084 510 173 30 147 chr5 65469757 65469777 -87067482 + B2_Mm2 SINE B2 164 182 -13 9 1084 381 117 0 0 chr5 65470136 65470196 -87067063 + (ATGGTG)n Simple_repeat Simple_repeat 4 63 0 9 1084 728 228 10 50 chr5 65470601 65470800 -87066459 - B4 SINE B4 -20 272 82 1 1084 493 219 187 41 chr5 65470813 65470984 -87066275 - B3A SINE B2 0 198 3 1 1084 402 200 32 32 chr5 65470988 65471081 -87066178 - B4 SINE B4 -198 94 2 1 1084 387 141 0 0 chr5 65471705 65471769 -87065490 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1084 751 220 70 18 chr5 65471789 65471960 -87065299 - B3A SINE B2 -16 182 3 1 1084 249 123 138 0 chr5 65472340 65472405 -87064854 - MLT2B5 LTR ERVL -6 549 476 1 1084 596 232 37 27 chr5 65472452 65472682 -87064577 - MT2A LTR ERVL -63 538 316 1 1084 2996 142 31 20 chr5 65472684 65473237 -87064022 - RLTR20B2 LTR ERVK 0 560 2 1 1084 637 177 89 0 chr5 65473343 65473467 -87063792 + B3 SINE B2 7 141 -75 1 1084 250 270 333 0 chr5 65473538 65473649 -87063610 + B3 SINE B2 69 216 0 1 1084 1121 69 0 6 chr5 65474281 65474442 -87062817 + B2_Mm2 SINE B2 28 187 -8 1 1084 878 150 0 0 chr5 65475218 65475351 -87061908 + B1_Mus1 SINE Alu 3 135 -13 1 1084 357 238 173 17 chr5 65475465 65475677 -87061582 - L1ME3B LINE L1 -226 5938 5698 1 1084 1097 243 139 46 chr5 65475685 65476182 -87061077 + L1ME1 LINE L1 5528 6070 -109 1 1084 372 320 82 24 chr5 65476285 65476493 -87060766 - L1M3 LINE L1 -985 5155 4936 1 1084 23 33 0 0 chr5 65476556 65476586 -87060673 + AT_rich Low_complexity Low_complexity 1 30 0 1 1084 248 204 193 0 chr5 65477199 65477287 -87059972 + MLT1B LTR MaLR 5 109 -281 1 1084 817 298 103 37 chr5 65477430 65477563 -87059696 + L1_Mur3 LINE L1 5109 5270 -610 1 1084 333 0 0 0 chr5 65477563 65477600 -87059659 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1084 399 21 0 0 chr5 65477600 65477647 -87059612 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1084 817 298 103 37 chr5 65477647 65477947 -87059312 + L1_Mur3 LINE L1 5271 5571 -309 1 1084 334 317 23 64 chr5 65477948 65478120 -87059139 + B4A SINE B4 2 166 -126 1 1084 1231 21 14 0 chr5 65478223 65478368 -87058891 + B1_Mus2 SINE Alu 1 147 0 1 1084 847 276 23 57 chr5 65478477 65478777 -87058482 + B4A SINE B4 2 291 -1 1 1084 302 253 63 0 chr5 65478784 65478863 -87058396 + 7SLRNA srpRNA srpRNA 1 84 -230 1 1084 971 210 35 0 chr5 65479737 65479937 -87057322 - B3 SINE B2 -9 207 1 1 1084 786 127 0 0 chr5 65480582 65480700 -87056559 + B1_Mur2 SINE Alu 2 119 -30 1 1084 23 0 0 0 chr5 65481685 65481708 -87055551 + AT_rich Low_complexity Low_complexity 1 23 0 1 1084 31 0 0 0 chr5 65482073 65482104 -87055155 + AT_rich Low_complexity Low_complexity 1 31 0 1 1084 1314 257 82 29 chr5 65483933 65484410 -87052849 - Lx7 LINE L1 -1213 6483 5982 1 1084 239 237 51 10 chr5 65484527 65484625 -87052634 - MTEb LTR MaLR 0 379 278 1 1084 198 0 0 0 chr5 65485379 65485401 -87051858 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1084 306 0 0 0 chr5 65485401 65485434 -87051825 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1084 402 193 0 65 chr5 65485448 65485541 -87051718 - RSINE1 SINE B4 -45 120 33 1 1084 378 108 25 75 chr5 65485593 65485673 -87051586 + ORR1A3 LTR MaLR 1 76 -251 1 1084 1712 119 0 7 chr5 65485942 65486213 -87051046 + ORR1A3 LTR MaLR 50 318 -8 1 1084 247 114 0 0 chr5 65486616 65486651 -87050608 - RSINE1 SINE B4 -123 42 8 1 1084 1370 143 248 10 chr5 65486834 65487004 -87050255 - ORR1C2 LTR MaLR 0 384 173 1 1084 732 71 0 0 chr5 65487004 65487103 -87050156 + (GA)n Simple_repeat Simple_repeat 2 100 0 1 1084 1370 143 248 10 chr5 65487103 65487242 -87050017 - ORR1C2 LTR MaLR -212 172 2 1 1084 897 262 97 78 chr5 65487382 65487892 -87049367 + RMER4B LTR ERVK 1 588 -23 1 1084 872 217 39 29 chr5 65487951 65488155 -87049104 + B3 SINE B2 10 215 -1 1 1084 460 257 70 42 chr5 65488663 65488805 -87048454 + ID_B1 SINE B4 78 223 -1 1 1084 4403 183 39 53 chr5 65488863 65489855 -87047404 - MTC-int LTR MaLR -274 984 7 1 1084 819 130 102 30 chr5 65489869 65490035 -87047224 - MTC LTR MaLR 0 421 244 1 1084 360 0 0 0 chr5 65491085 65491125 -87046134 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1084 352 365 76 9 chr5 65491324 65491534 -87045725 - MIR SINE MIR -15 247 24 1 1084 494 271 0 33 chr5 65491602 65491724 -87045535 + B3A SINE B2 2 119 -79 1 1084 315 0 0 0 chr5 65491788 65491823 -87045436 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1084 22 0 0 0 chr5 65491867 65491889 -87045370 + AT_rich Low_complexity Low_complexity 1 22 0 1 1084 481 229 167 19 chr5 65491941 65492097 -87045162 - MER20 DNA MER1_type -40 179 1 1 1084 198 301 161 63 chr5 65492404 65492578 -87044681 - L2a LINE L2 -6 3420 3230 1 1084 286 269 63 30 chr5 65492629 65492856 -87044403 + L1MC4 LINE L1 5910 6150 -14 1 1084 369 0 0 0 chr5 65494928 65494969 -87042290 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1084 778 205 232 0 chr5 65495510 65495734 -87041525 - ORR1D2 LTR MaLR -4 366 91 1 1084 464 257 18 0 chr5 65495725 65495834 -87041425 - B1F2 SINE Alu -38 111 1 1 1084 212 349 43 62 chr5 65495858 65496020 -87041239 - RSINE1 SINE B4 -4 161 3 1 1084 1140 69 0 7 chr5 65496508 65496654 -87040605 - B1_Mus2 SINE Alu -1 146 2 1 1084 1223 48 0 0 chr5 65497168 65497315 -87039944 + B1_Mm SINE Alu 1 147 0 1 1084 213 39 0 0 chr5 65497315 65497341 -87039918 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1084 255 31 0 0 chr5 65498035 65498067 -87039192 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1084 22 0 0 0 chr5 65498790 65498812 -87038447 + GC_rich Low_complexity Low_complexity 1 22 0 1 1084 30 59 0 0 chr5 65499014 65499065 -87038194 + GC_rich Low_complexity Low_complexity 1 51 0 1 1084 766 201 0 57 chr5 65501302 65501460 -87035799 + B1_Mur1 SINE Alu 1 149 0 1 1084 641 279 152 30 chr5 65501951 65502313 -87034946 - MLT1I LTR MaLR -1 410 5 2 1084 399 21 0 0 chr5 65502712 65502760 -87034499 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1084 1161 162 41 18 chr5 65503141 65503361 -87033898 + URR1A DNA MER1_type 1 225 -1 4 1084 3101 47 34 3 chr5 65503534 65503922 -87033337 + MTB LTR MaLR 1 400 0 5 1084 21 0 0 0 chr5 65504040 65504061 -87033198 + AT_rich Low_complexity Low_complexity 1 21 0 6 1084 435 245 22 36 chr5 65504494 65504624 -87032635 + B1F1 SINE Alu 1 136 -13 7 1084 409 301 208 35 chr5 65504942 65505259 -87032000 + LTR87 LTR ERVL? 241 612 -12 8 1084 844 134 90 0 chr5 65505885 65506019 -87031240 - B1_Mus1 SINE Alu 0 148 3 9 1084 863 140 9 26 chr5 65506302 65506533 -87030726 + CT-rich Low_complexity Low_complexity 1 226 0 1 1084 531 220 64 0 chr5 65506561 65506670 -87030589 + B1_Mur3 SINE Alu 2 117 -32 1 1084 268 234 78 0 chr5 65506703 65506767 -87030492 - ID2 SINE ID -14 69 1 1 1084 224 322 0 17 chr5 65507318 65507378 -87029881 - BC1_Mm scRNA scRNA -68 84 26 1 1084 721 164 8 0 chr5 65507428 65507556 -87029703 - B1_Mur2 SINE Alu -20 129 1 1 1084 674 229 0 35 chr5 65507573 65507718 -87029541 - B1F SINE Alu -9 140 1 1 1084 379 186 0 134 chr5 65508107 65508219 -87029040 + MT2B LTR ERVL 155 251 -350 1 1084 651 169 17 0 chr5 65508123 65508241 -87029018 + B1_Mur3 SINE Alu 2 121 -28 1 1084 1342 157 65 94 chr5 65508385 65508850 -87028409 + RMER4A LTR ERVK 30 585 0 1 1084 287 301 44 0 chr5 65509455 65509568 -87027691 + Tigger13a DNA MER2_type 315 432 -339 1 1084 475 275 137 20 chr5 65509741 65509990 -87027269 + Tigger13a DNA MER2_type 444 721 -50 1 1084 904 174 69 35 chr5 65510150 65510352 -87026907 - B3 SINE B2 -6 210 2 2 1084 24 0 0 0 chr5 65510726 65510750 -87026509 + AT_rich Low_complexity Low_complexity 1 24 0 2 1084 363 325 24 0 chr5 65510842 65510968 -87026291 + B1F1 SINE Alu 14 142 -7 2 1084 371 235 12 0 chr5 65510972 65511053 -87026206 + ID4_ SINE ID 2 83 0 2 1084 1268 211 112 17 chr5 65511153 65511447 -87025812 - ORR1D2 LTR MaLR 0 370 49 2 1084 6371 188 95 42 chr5 65511447 65513573 -87023686 + MERVL_2A-int LTR ERVL 2860 5571 -190 2 1084 561 202 35 0 chr5 65513573 65513687 -87023572 - PB1D9 SINE Alu -2 118 1 2 1084 6371 194 76 65 chr5 65513687 65513894 -87023365 + MERVL_2A-int LTR ERVL 5572 5761 0 2 1084 1677 219 202 5 chr5 65513894 65514339 -87022920 + MT2A LTR ERVL 1 533 0 2 1084 535 159 261 0 chr5 65514794 65514932 -87022327 - Lx5 LINE L1 -5 7053 6857 2 1084 4027 147 63 55 chr5 65514932 65515270 -87021989 - RLTR13B1 LTR ERVK -89 934 476 2 1084 270 56 0 0 chr5 65515270 65515306 -87021953 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1084 4027 136 68 50 chr5 65515306 65515762 -87021497 - RLTR13B1 LTR ERVK -418 475 6 2 1084 1134 144 50 0 chr5 65515769 65515949 -87021310 - Lx5 LINE L1 -223 6827 6639 2 1084 714 177 49 14 chr5 65517032 65517175 -87020084 + B1_Mur1 SINE Alu 1 148 -1 3 1084 692 219 74 32 chr5 65517431 65517620 -87019639 + B3A SINE B2 2 198 0 3 1084 267 286 0 12 chr5 65517772 65517857 -87019402 + L1M5 LINE L1 5685 5768 -472 3 1084 254 194 44 15 chr5 65517876 65517944 -87019315 + (TATATG)n Simple_repeat Simple_repeat 1 70 0 3 1084 717 110 0 0 chr5 65518735 65518844 -87018415 + (GTCTG)n Simple_repeat Simple_repeat 4 112 0 3 1084 530 260 8 8 chr5 65518845 65518977 -87018282 - B1F SINE Alu -11 138 7 3 1084 523 195 169 107 chr5 65519095 65519243 -87018016 + B3A SINE B2 2 168 -30 3 1084 1263 99 0 0 chr5 65519243 65519457 -87017802 + (CA)n Simple_repeat Simple_repeat 1 214 0 3 1084 523 195 169 107 chr5 65519457 65519483 -87017776 + B3A SINE B2 169 190 -8 3 1084 27 62 0 0 chr5 65520027 65520075 -87017184 + AT_rich Low_complexity Low_complexity 1 48 0 3 1084 732 245 88 34 chr5 65520076 65520338 -87016921 + B4A SINE B4 6 281 -11 3 1084 500 0 0 16 chr5 65520338 65520399 -87016860 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1084 21 0 0 0 chr5 65521435 65521456 -87015803 + AT_rich Low_complexity Low_complexity 1 21 0 4 1084 22 0 0 0 chr5 65521578 65521600 -87015659 + AT_rich Low_complexity Low_complexity 1 22 0 4 1084 950 41 0 0 chr5 65525163 65525284 -87011975 + B1_Mm SINE Alu 27 147 0 4 1084 216 0 0 0 chr5 65525296 65525320 -87011939 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1084 213 154 0 0 chr5 65526025 65526064 -87011195 + (TTA)n Simple_repeat Simple_repeat 2 40 0 4 1084 526 178 75 0 chr5 65526069 65526176 -87011083 - PB1D9 SINE Alu -3 117 3 4 1084 460 234 18 0 chr5 65526364 65526475 -87010784 - B3 SINE B2 0 216 104 4 1084 290 203 54 0 chr5 65526599 65526673 -87010586 - Lx9 LINE L1 -24 7620 7543 4 1084 417 86 0 0 chr5 65526687 65526745 -87010514 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1084 292 256 12 25 chr5 65527389 65527469 -87009790 - ID2 SINE ID -3 80 2 5 1084 401 152 127 0 chr5 65527540 65527619 -87009640 + 5S rRNA rRNA 1 89 -32 5 1084 295 271 81 36 chr5 65527837 65527948 -87009311 - PB1D10 SINE Alu -1 116 1 5 1084 304 318 98 25 chr5 65528099 65528302 -87008957 + Tigger12c DNA MER2_type 24 241 -493 5 1084 477 221 20 111 chr5 65528370 65528523 -87008736 + B1F2 SINE Alu 2 140 -9 5 1084 201 348 35 69 chr5 65529290 65529463 -87007796 - MIR SINE MIR -28 234 68 5 1084 239 172 0 65 chr5 65529576 65529638 -87007621 + Charlie5 DNA MER1_type 40 97 -2527 5 1084 1172 49 0 0 chr5 65529651 65529794 -87007465 - B1_Mus1 SINE Alu -4 144 2 5 1084 26 0 0 0 chr5 65529794 65529820 -87007439 + AT_rich Low_complexity Low_complexity 1 26 0 5 1084 424 316 107 6 chr5 65530841 65531000 -87006259 + B3 SINE B2 10 184 -32 5 1084 270 0 0 0 chr5 65531000 65531030 -87006229 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1084 468 0 0 0 chr5 65531030 65531081 -87006178 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1084 201 329 24 0 chr5 65531217 65531299 -87005960 + MER5B DNA MER1_type 1 84 -94 6 1084 253 242 50 10 chr5 65532259 65532359 -87004900 + PB1D9 SINE Alu 17 120 0 6 1084 352 205 39 0 chr5 65534702 65534780 -87002479 - ID_B1 SINE B4 -1 223 143 6 1084 393 168 227 23 chr5 65535049 65535177 -87002082 - B3A SINE B2 -43 155 2 6 1084 526 267 124 58 chr5 65535220 65535494 -87001765 + B4A SINE B4 1 292 0 6 1085 508 228 106 0 chr5 65536547 65536670 -87000589 - RSINE1 SINE B4 -6 159 24 6 1085 194 254 127 0 chr5 65537245 65537316 -86999943 + MIRc SINE MIR 37 116 -152 6 1085 325 215 148 9 chr5 65537664 65537783 -86999476 - B1F1 SINE Alu -15 134 1 6 1085 310 273 13 0 chr5 65538052 65538129 -86999130 - ID4_ SINE ID -4 79 2 7 1085 531 192 159 82 chr5 65538679 65538861 -86998398 + B3A SINE B2 3 198 0 7 1085 200 316 25 38 chr5 65542472 65542551 -86994708 + MER5A DNA MER1_type 17 94 -95 7 1085 585 0 0 0 chr5 65542921 65542986 -86994273 + (GA)n Simple_repeat Simple_repeat 2 66 0 7 1085 1040 244 24 24 chr5 65543024 65543322 -86993937 - Lx8 LINE L1 -237 7236 6939 7 1085 21 36 0 0 chr5 65543465 65543493 -86993766 + AT_rich Low_complexity Low_complexity 1 28 0 7 1085 533 273 18 12 chr5 65543786 65543949 -86993310 - RSINE1 SINE B4 -1 164 1 7 1085 202 333 0 16 chr5 65543977 65544041 -86993218 + (TG)n Simple_repeat Simple_repeat 2 64 0 7 1085 776 291 80 11 chr5 65544064 65544328 -86992931 - B4A SINE B4 -6 286 5 7 1085 681 285 167 22 chr5 65545240 65545732 -86991527 + L1MB7 LINE L1 5391 5953 -231 7 1085 584 116 11 0 chr5 65546438 65546533 -86990726 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 8 1085 219 264 213 32 chr5 65546882 65546976 -86990283 + B1F SINE Alu 11 121 -28 8 1085 472 305 23 0 chr5 65547061 65547192 -86990067 + B1F SINE Alu 9 142 -7 8 1085 344 286 190 21 chr5 65547536 65547815 -86989444 + L1MC4 LINE L1 6818 7143 -899 8 1085 268 293 14 89 chr5 65547898 65548044 -86989215 + L1MC4 LINE L1 7804 7938 -104 8 1085 307 281 222 0 chr5 65548250 65548385 -86988874 - B3 SINE B2 -46 170 6 8 1085 1070 228 58 4 chr5 65549647 65549924 -86987335 + B4A SINE B4 1 292 0 8 1085 270 0 0 0 chr5 65550561 65550591 -86986668 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1085 414 0 0 0 chr5 65550591 65550636 -86986623 + (GA)n Simple_repeat Simple_repeat 1 46 0 8 1085 223 259 0 0 chr5 65550716 65550770 -86986489 - B3 SINE B2 -87 129 76 8 1085 294 29 0 0 chr5 65551035 65551070 -86986189 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1085 1038 52 0 0 chr5 65551239 65551374 -86985885 + B2_Mm2 SINE B2 1 135 -60 9 1085 411 274 10 0 chr5 65551410 65551512 -86985747 + PB1D10 SINE Alu 4 106 -11 9 1085 207 0 0 0 chr5 65551512 65551535 -86985724 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1085 209 285 165 23 chr5 65551544 65551677 -86985582 + L2 LINE L2 2842 2993 -426 9 1085 419 314 53 25 chr5 65552677 65552958 -86984301 + B4A SINE B4 2 290 -2 9 1085 234 0 0 0 chr5 65553183 65553209 -86984050 + (TC)n Simple_repeat Simple_repeat 2 27 0 9 1085 225 327 0 0 chr5 65553209 65553264 -86983995 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1085 433 176 48 29 chr5 65553644 65553749 -86983510 + B1_Mur2 SINE Alu 43 149 0 9 1085 501 127 0 0 chr5 65555298 65555377 -86981882 + (CA)n Simple_repeat Simple_repeat 1 79 0 9 1085 768 180 140 21 chr5 65556045 65556238 -86981021 + B3 SINE B2 1 216 0 9 1085 21 0 0 0 chr5 65556334 65556355 -86980904 + AT_rich Low_complexity Low_complexity 1 21 0 1 1085 627 244 44 39 chr5 65556683 65556928 -86980331 - ORR1D1 LTR MaLR -115 244 1 1 1085 477 234 150 12 chr5 65556930 65557090 -86980169 - MTEa LTR MaLR -190 189 8 1 1085 1522 162 48 65 chr5 65557305 65557642 -86979617 - Lx5 LINE L1 -8 7042 6712 1 1085 781 190 49 27 chr5 65557642 65557826 -86979433 - RLTR24 LTR ERV1 -79 450 263 1 1085 309 102 20 0 chr5 65557809 65557858 -86979401 - RLTR24 LTR ERV1 -439 90 41 1 1085 582 183 35 0 chr5 65559465 65559580 -86977679 - PB1D9 SINE Alu 0 120 2 1 1085 468 0 0 0 chr5 65559625 65559677 -86977582 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1085 380 293 33 39 chr5 65559747 65559928 -86977331 + L1MB5 LINE L1 3337 3516 -2630 1 1085 279 210 48 0 chr5 65560033 65560095 -86977164 + L1MB5 LINE L1 3966 4030 -2116 1 1085 522 301 161 50 chr5 65560516 65561001 -86976258 + L1MB5 LINE L1 4579 5117 -1029 1 1085 352 190 171 48 chr5 65561029 65561134 -86976125 + PB1D9 SINE Alu 2 119 -1 1 1085 401 297 72 12 chr5 65561182 65561349 -86975910 + B4A SINE B4 29 205 -87 1 1085 1496 268 141 10 chr5 65561384 65562217 -86975042 + L1MB5 LINE L1 5192 6127 -47 1 1085 543 160 90 39 chr5 65562255 65562384 -86974875 + B1_Mus1 SINE Alu 13 147 -1 1 1085 396 0 0 0 chr5 65562951 65562995 -86974264 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1085 687 276 188 4 chr5 65562995 65563235 -86974024 - B4A SINE B4 0 292 9 1 1085 1272 202 43 0 chr5 65563431 65563689 -86973570 + RMER1B Other Other 1 269 -797 1 1085 2348 11 43 11 chr5 65563708 65563986 -86973273 - L1Md_F2 LINE L1 -839 5044 4758 1 1085 5135 22 0 0 chr5 65563986 65564570 -86972689 + L1Md_F2 LINE L1 5003 5586 -297 1 1085 8271 42 1 3 chr5 65564570 65565560 -86971699 + L1Md_F2 LINE L1 5587 6574 -8 1 1085 2525 142 114 100 chr5 65565561 65566133 -86971126 - RMER19C LTR ERVK -27 584 5 1 1085 3443 162 103 12 chr5 65566135 65566873 -86970386 + RMER1A Other Other 259 1034 -32 1 1085 482 243 160 20 chr5 65567769 65567951 -86969308 + B3A SINE B2 1 203 -13 1 1085 445 235 0 0 chr5 65568188 65568273 -86968986 - PB1D9 SINE Alu -30 90 6 1 1085 1944 255 72 60 chr5 65568547 65569111 -86968148 + Lx8 LINE L1 6423 7014 -459 1 1085 492 303 58 13 chr5 65569111 65569265 -86967994 + RSINE1 SINE B4 3 163 -2 1 1085 1944 255 72 60 chr5 65569265 65569384 -86967875 + Lx8 LINE L1 7015 7114 -359 1 1085 271 73 0 0 chr5 65569460 65569501 -86967758 + B1_Mur4 SINE Alu 110 150 0 1 1085 306 312 0 48 chr5 65569896 65569980 -86967279 + B4 SINE B4 82 161 -131 1 1085 305 323 54 0 chr5 65569900 65569993 -86967266 + PB1D7 SINE Alu 1 98 -22 1 1085 753 281 10 19 chr5 65570198 65570405 -86966854 + ID_B1 SINE B4 5 209 -15 1 1085 369 62 0 0 chr5 65570490 65570538 -86966721 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1085 3661 269 54 47 chr5 65570538 65571826 -86965433 + Lx9 LINE L1 6348 7644 0 1 1085 220 345 0 23 chr5 65572063 65572149 -86965110 - MIRb SINE MIR -46 222 139 1 1085 345 102 0 0 chr5 65572410 65572469 -86964790 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1085 243 0 0 0 chr5 65572470 65572497 -86964762 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1085 486 295 77 31 chr5 65572889 65573085 -86964174 - LTR40b LTR ERVL -15 447 243 1 1085 473 246 78 0 chr5 65573229 65573371 -86963888 - LTR41 LTR ERVL -612 156 4 1 1085 388 158 21 0 chr5 65573467 65573562 -86963697 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 1 1085 473 176 24 0 chr5 65573645 65573730 -86963529 + MTEb LTR MaLR 1 87 -292 1 1085 324 226 96 11 chr5 65573735 65573829 -86963430 - MTD LTR MaLR -166 253 152 1 1085 548 266 7 28 chr5 65574170 65574313 -86962946 - ID_B1 SINE B4 -6 218 79 1 1085 2281 192 63 70 chr5 65574644 65574784 -86962475 + RMER15 LTR ERVL 9 140 -435 1 1085 2647 155 52 10 chr5 65574784 65575287 -86961972 - RLTR28 LTR ERVL 0 524 1 1 1085 2281 192 63 70 chr5 65575287 65575683 -86961576 + RMER15 LTR ERVL 141 533 -42 1 1085 378 0 0 0 chr5 65575683 65575725 -86961534 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1085 2281 192 63 70 chr5 65575725 65575754 -86961505 + RMER15 LTR ERVL 534 570 -5 1 1085 713 241 0 83 chr5 65575801 65576005 -86961254 + B3A SINE B2 11 197 -1 1 1085 391 273 37 118 chr5 65576843 65576913 -86960346 + L1M5 LINE L1 5318 5383 -781 1 1085 978 177 59 20 chr5 65576913 65577115 -86960144 + B3 SINE B2 1 210 -6 1 1085 433 273 37 118 chr5 65577115 65577289 -86959970 + L1M5 LINE L1 5383 5542 -622 1 1085 472 169 12 0 chr5 65577289 65577372 -86959887 + ID_B1 SINE B4 126 209 -15 1 1085 225 0 0 0 chr5 65577374 65577399 -86959860 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1 1085 272 292 116 17 chr5 65577400 65577581 -86959678 + L1M5 LINE L1 5686 5884 -560 1 1085 225 0 0 0 chr5 65577638 65577663 -86959596 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1085 1038 88 0 57 chr5 65577706 65577863 -86959396 - B1_Mus1 SINE Alu 0 148 1 1 1085 267 217 96 0 chr5 65577873 65577956 -86959303 - L1M4 LINE L1 -491 5683 5593 1 1085 270 316 13 0 chr5 65578024 65578103 -86959156 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 1085 341 262 115 55 chr5 65578122 65578517 -86958742 + RLTR12B LTR ERVK 1 294 -65 1 1085 242 273 0 0 chr5 65578638 65578693 -86958566 + GA-rich Low_complexity Low_complexity 6 60 0 1 1085 230 254 0 0 chr5 65580165 65580220 -86957039 + B1F SINE Alu 1 55 -94 1 1085 309 118 0 0 chr5 65580261 65580312 -86956947 + (TAG)n Simple_repeat Simple_repeat 3 53 0 1 1085 342 196 1 143 chr5 65580490 65580591 -86956668 - ORR1D1 LTR MaLR -270 89 1 1 1085 2457 101 0 0 chr5 65580659 65580986 -86956273 - ORR1A2 LTR MaLR 0 327 1 1 1085 305 114 0 0 chr5 65580986 65581030 -86956229 + ORR1B1 LTR MaLR 24 67 -327 1 1085 2719 137 9 7 chr5 65581030 65581494 -86955765 + RMER12B LTR ERVK 1 465 -939 1 1085 1180 70 0 0 chr5 65581496 65581654 -86955605 + B2_Mm2 SINE B2 1 158 -37 1 1085 770 107 0 0 chr5 65581651 65581763 -86955496 + ORR1B1 LTR MaLR 283 394 0 1 1085 395 252 15 61 chr5 65582058 65582189 -86955070 + ID_B1 SINE B4 100 224 0 1 1085 923 237 28 19 chr5 65582212 65582423 -86954836 + B3 SINE B2 2 214 -2 1 1085 44 0 0 0 chr5 65582656 65582700 -86954559 + AT_rich Low_complexity Low_complexity 1 44 0 1 1085 797 138 0 23 chr5 65583511 65583644 -86953615 + B1_Mur4 SINE Alu 1 130 -20 1 1085 297 0 0 0 chr5 65583652 65583685 -86953574 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1085 423 224 84 0 chr5 65583715 65583822 -86953437 - B3 SINE B2 0 216 101 1 1085 260 114 0 0 chr5 65583822 65583857 -86953402 - MurSatRep1 Unknown Unknown -1879 258 224 1 1085 666 154 34 0 chr5 65584518 65584635 -86952624 + B1_Mur2 SINE Alu 28 148 -1 1 1085 1290 63 15 31 chr5 65584639 65584723 -86952536 + B2_Mm2 SINE B2 2 85 -110 1 1085 4106 41 61 0 chr5 65584723 65585212 -86952047 - MURVY-LTR LTR ERV1 0 519 1 1 1085 1290 63 15 31 chr5 65585212 65585322 -86951937 + B2_Mm2 SINE B2 86 193 -2 1 1085 277 140 228 0 chr5 65585322 65585379 -86951880 + L1_Mur3 LINE L1 3295 3364 -2516 1 1085 1695 36 0 0 chr5 65585427 65585620 -86951639 + B2_Mm1t SINE B2 1 193 0 1 1085 308 327 9 17 chr5 65585685 65585800 -86951459 + MLT1H1 LTR MaLR 11 124 -431 1 1085 482 270 0 9 chr5 65586400 65586512 -86950747 + PB1 SINE Alu 9 119 -8 1 1085 513 265 53 0 chr5 65586640 65586772 -86950487 - RSINE1 SINE B4 -21 144 6 1 1085 946 230 15 10 chr5 65586871 65587077 -86950182 - B3 SINE B2 -7 209 3 1 1085 349 254 103 44 chr5 65587277 65587414 -86949845 - L1MB7 LINE L1 0 6178 6035 1 1085 674 162 120 23 chr5 65587481 65587614 -86949645 - B1_Mus2 SINE Alu 0 147 2 1 1085 838 265 25 0 chr5 65587692 65587896 -86949363 - L1MC LINE L1 -559 5774 5566 1 1085 446 279 31 8 chr5 65588038 65588168 -86949091 - RSINE1 SINE B4 -29 136 4 1 1085 286 300 36 9 chr5 65588170 65588281 -86948978 - L1MC LINE L1 -983 5163 5050 1 1085 1773 130 101 3 chr5 65588285 65588601 -86948658 - ORR1B1 LTR MaLR -1 393 47 1 1085 641 228 80 10 chr5 65588625 65588824 -86948435 - L1MC LINE L1 -1113 5033 4821 1 1085 430 233 146 0 chr5 65588924 65589027 -86948232 - RSINE1 SINE B4 -25 140 23 1 1085 242 170 75 0 chr5 65589070 65589123 -86948136 - RLTR20B3 LTR ERVK 0 577 521 1 1085 1096 286 72 94 chr5 65589123 65589328 -86947931 - L1MC LINE L1 -1470 4676 4491 1 1085 328 233 133 98 chr5 65589328 65589471 -86947788 - RSINE1 SINE B4 -15 150 3 1 1085 1096 286 72 94 chr5 65589471 65590084 -86947175 - L1MC LINE L1 -1656 4490 3876 1 1085 765 179 0 7 chr5 65592376 65592511 -86944748 + B1_Mur2 SINE Alu 15 148 -1 1 1085 601 193 42 8 chr5 65592877 65592997 -86944262 + B1_Mur2 SINE Alu 17 140 -9 1 1085 932 272 37 48 chr5 65593055 65593410 -86943849 - MTE2a LTR MaLR 0 379 29 1 1085 252 0 0 0 chr5 65593471 65593499 -86943760 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1085 679 178 54 8 chr5 65593499 65593629 -86943630 - B1_Mur1 SINE Alu -12 137 2 1 1085 231 88 0 0 chr5 65593637 65593671 -86943588 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1085 550 163 154 19 chr5 65594353 65594509 -86942750 + B3 SINE B2 40 216 0 1 1085 366 229 23 92 chr5 65594683 65594856 -86942403 + RSINE1 SINE B4 2 162 -3 1 1085 23 68 0 0 chr5 65595715 65595759 -86941500 + AT_rich Low_complexity Low_complexity 1 44 0 1 1085 2042 181 26 12 chr5 65595840 65596255 -86941004 - MTC LTR MaLR 0 421 1 1 1085 5248 173 61 24 chr5 65596263 65597460 -86939799 - MTC-int LTR MaLR -16 1242 2 1 1085 509 172 45 20 chr5 65597461 65597592 -86939667 - MTC LTR MaLR 0 421 246 1 1085 836 174 0 40 chr5 65598134 65598284 -86938975 - B1_Mur2 SINE Alu -4 145 2 1 1085 397 236 126 31 chr5 65598329 65598456 -86938803 - ID_B1 SINE B4 -1 223 85 1 1085 367 240 18 46 chr5 65598528 65598637 -86938622 + MT2B LTR ERVL 152 257 -344 1 1085 695 179 58 22 chr5 65598548 65598685 -86938574 + B1_Mur3 SINE Alu 8 149 0 1 1085 4310 203 81 13 chr5 65598726 65599628 -86937631 - Lx5 LINE L1 0 7050 6088 1 1085 14226 126 16 13 chr5 65599626 65601262 -86935997 - Lx5 LINE L1 -1100 5950 4278 1 1085 378 0 0 0 chr5 65601262 65601304 -86935955 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 1 1085 14226 131 16 16 chr5 65601304 65602020 -86935239 - Lx5 LINE L1 -1600 4277 3593 1 1085 566 63 0 0 chr5 65602021 65602100 -86935159 + ORR1A3 LTR MaLR 220 298 -28 1 1085 1487 135 0 4 chr5 65602099 65602337 -86934922 - MTC LTR MaLR -109 237 1 1 1085 2224 130 25 0 chr5 65602337 65602692 -86934567 + L1_Mur2 LINE L1 2483 2846 -3031 1 1085 306 45 0 22 chr5 65602693 65602738 -86934521 + ORR1A3 LTR MaLR 283 326 0 1 1085 2431 143 64 0 chr5 65602738 65603144 -86934115 - L1_Mur2 LINE L1 -3390 2487 2056 1 1085 536 77 0 13 chr5 65603144 65603223 -86934036 + (GGA)n Simple_repeat Simple_repeat 2 79 0 2 1085 237 316 43 57 chr5 65603273 65603414 -86933845 - RMER4B LTR ERVK -442 143 5 2 1085 534 242 128 64 chr5 65603537 65603740 -86933519 - B3 SINE B2 0 216 1 2 1085 596 112 0 30 chr5 65603817 65603918 -86933341 - PB1D9 SINE Alu 0 120 23 2 1085 899 152 21 0 chr5 65605180 65605325 -86931934 - B1_Mur4 SINE Alu -1 149 2 2 1085 693 266 31 16 chr5 65605487 65605678 -86931581 - B3A SINE B2 -4 194 1 2 1085 358 244 0 0 chr5 65605803 65605881 -86931378 + Tigger6b DNA MER2_type 3 80 -1517 2 1085 854 218 6 13 chr5 65606030 65606188 -86931071 + RSINE1 SINE B4 3 159 -6 2 1085 24 0 0 0 chr5 65606226 65606250 -86931009 + AT_rich Low_complexity Low_complexity 1 24 0 2 1085 202 186 0 0 chr5 65606364 65606407 -86930852 + L2 LINE L2 416 458 -2961 2 1085 605 67 260 0 chr5 65606437 65606541 -86930718 + B1_Mus2 SINE Alu 2 132 -15 2 1085 1668 26 0 10 chr5 65606645 65606838 -86930421 + B2_Mm1a SINE B2 2 192 -1 2 1085 1057 207 14 14 chr5 65607293 65607509 -86929750 - B3 SINE B2 0 216 1 2 1085 285 75 0 0 chr5 65607610 65607650 -86929609 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1085 476 283 80 0 chr5 65608218 65608356 -86928903 - MLT1F2 LTR MaLR 0 560 412 2 1085 275 235 57 76 chr5 65608353 65608485 -86928774 - MLT1F2 LTR MaLR -191 462 308 2 1085 458 360 6 36 chr5 65609330 65609497 -86927762 - RSINE1 SINE B4 -1 164 3 2 1085 515 226 0 0 chr5 65610094 65610196 -86927063 - B1F SINE Alu -9 140 39 2 1085 795 224 82 10 chr5 65610571 65610765 -86926494 + B3 SINE B2 3 210 -6 2 1085 25 51 0 0 chr5 65610801 65610840 -86926419 + AT_rich Low_complexity Low_complexity 1 39 0 2 1085 228 135 0 0 chr5 65611263 65611300 -86925959 + (C)n Simple_repeat Simple_repeat 1 37 0 2 1085 267 298 23 61 chr5 65611335 65611467 -86925792 - L1MEd LINE L1 -5956 163 37 2 1085 226 279 47 71 chr5 65612170 65612255 -86925004 + Kanga11a DNA Tc2 888 970 0 2 1085 571 306 71 8 chr5 65613744 65614011 -86923248 + L1MD2 LINE L1 54 337 -6210 2 1085 206 135 27 0 chr5 65614011 65614048 -86923211 + (CACG)n Simple_repeat Simple_repeat 3 40 0 2 1085 270 0 0 0 chr5 65614167 65614197 -86923062 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1085 450 316 226 4 chr5 65616110 65616367 -86920892 - LTR87 LTR ERVL? -138 486 173 2 1085 972 214 23 37 chr5 65617029 65617247 -86920012 - B3 SINE B2 0 216 2 2 1085 544 212 52 17 chr5 65617287 65617402 -86919857 - B1_Mur1 SINE Alu 0 149 31 2 1085 271 289 91 32 chr5 65617402 65617556 -86919703 - L1M3 LINE L1 -2452 3688 3526 2 1085 291 36 71 18 chr5 65618222 65618278 -86918981 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2 1085 231 266 37 25 chr5 65618462 65618543 -86918716 + BC1_Mm scRNA scRNA 8 89 -63 2 1085 1283 20 0 0 chr5 65618563 65618709 -86918550 + B1_Mus2 SINE Alu 2 147 0 2 1085 660 171 68 23 chr5 65618775 65618907 -86918352 - B1_Mur2 SINE Alu -8 141 4 2 1085 855 253 113 51 chr5 65619999 65620274 -86916985 + B4 SINE B4 1 292 0 2 1085 345 236 214 0 chr5 65620784 65620873 -86916386 + PB1D7 SINE Alu 13 120 0 2 1085 919 104 20 14 chr5 65620966 65621112 -86916147 - URR1B DNA MER1_type 0 225 79 2 1085 203 79 26 0 chr5 65621114 65621152 -86916107 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2 1085 750 164 24 24 chr5 65621154 65621279 -86915980 - B1_Mm SINE Alu -7 140 16 2 1085 409 271 26 65 chr5 65621279 65621298 -86915961 - ID_B1 SINE B4 -7 215 77 2 1085 372 195 26 13 chr5 65621283 65621361 -86915898 - URR1B DNA MER1_type -146 79 1 2 1085 279 0 0 0 chr5 65621544 65621575 -86915684 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 2 1085 686 191 0 0 chr5 65621576 65621686 -86915573 - PB1D9 SINE Alu -9 111 2 2 1085 247 324 89 12 chr5 65621780 65621997 -86915262 + B4A SINE B4 1 284 -8 2 1085 197 250 31 15 chr5 65622895 65622960 -86914299 - MIRb SINE MIR -8 260 195 2 1085 240 149 45 11 chr5 65623137 65623225 -86914034 + GA-rich Low_complexity Low_complexity 5 95 0 2 1085 350 28 130 0 chr5 65623229 65623337 -86913922 + (CAGG)n Simple_repeat Simple_repeat 2 123 0 2 1085 590 138 85 0 chr5 65623322 65623586 -86913673 + (CAGAGA)n Simple_repeat Simple_repeat 1 286 0 2 1085 216 231 0 0 chr5 65623617 65623695 -86913564 + GA-rich Low_complexity Low_complexity 2 79 0 2 1085 436 161 115 0 chr5 65623698 65623785 -86913474 + B1F2 SINE Alu 40 136 -13 2 1085 415 230 189 8 chr5 65623821 65623948 -86913311 + MIRb SINE MIR 47 196 -72 2 1085 236 336 95 8 chr5 65624257 65624383 -86912876 + MIRb SINE MIR 66 202 -66 2 1085 667 268 32 0 chr5 65624622 65624779 -86912480 + RSINE1 SINE B4 2 163 -2 2 1085 723 189 38 0 chr5 65624841 65624973 -86912286 + B1F SINE Alu 1 137 -12 2 1085 639 229 35 186 chr5 65625477 65625785 -86911474 - ORR1A3 LTR MaLR -70 324 1 2 1085 633 219 92 38 chr5 65625815 65626000 -86911259 + B3A SINE B2 3 197 -1 2 1085 25 31 0 0 chr5 65626742 65626774 -86910485 + AT_rich Low_complexity Low_complexity 1 32 0 2 1085 341 209 232 80 chr5 65626871 65627022 -86910237 + B4A SINE B4 48 221 -71 2 1085 819 50 158 0 chr5 65626908 65627028 -86910231 + B1_Mus1 SINE Alu 10 148 0 2 1085 180 0 0 0 chr5 65627028 65627048 -86910211 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1085 315 233 0 32 chr5 65627048 65627110 -86910149 + B3A SINE B2 27 86 -112 2 1085 1305 76 0 0 chr5 65627149 65627481 -86909778 + (CA)n Simple_repeat Simple_repeat 1 332 0 2 1085 749 224 51 22 chr5 65627592 65627770 -86909489 + B3A SINE B2 1 183 -15 2 1085 940 130 0 0 chr5 65627883 65628021 -86909238 + B1_Mus1 SINE Alu 5 142 -6 2 1085 182 118 0 29 chr5 65628021 65628056 -86909203 + (GGGGA)n Simple_repeat Simple_repeat 3 36 0 2 1085 489 207 90 0 chr5 65628998 65629107 -86908152 - RCHARR1 DNA MER1_type -30 944 826 2 1085 459 223 258 67 chr5 65629107 65629285 -86907974 + B4A SINE B4 1 212 -80 2 1085 2142 119 118 11 chr5 65629281 65629442 -86907817 - RLTR11B LTR ERVK -58 395 207 2 1085 252 0 0 0 chr5 65629442 65629470 -86907789 + (TCC)n Simple_repeat Simple_repeat 1 28 0 2 1085 2142 119 118 11 chr5 65629470 65629665 -86907594 - RLTR11B LTR ERVK -247 206 2 2 1085 760 206 132 0 chr5 65629689 65629878 -86907381 + B3 SINE B2 2 215 -1 2 1085 352 288 0 0 chr5 65629883 65629956 -86907303 + B4A SINE B4 212 284 -8 2 1085 801 31 0 0 chr5 65629990 65630086 -86907173 + (TA)n Simple_repeat Simple_repeat 2 97 0 2 1085 333 0 0 0 chr5 65630224 65630261 -86906998 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1085 464 314 56 21 chr5 65630277 65630420 -86906839 - RSINE1 SINE B4 -1 164 17 2 1085 657 161 305 36 chr5 65631414 65631581 -86905678 + B3 SINE B2 2 213 -3 2 1085 279 203 0 0 chr5 65631594 65631663 -86905596 + (TA)n Simple_repeat Simple_repeat 2 70 0 2 1085 1231 108 57 0 chr5 65633435 65633611 -86903648 + B2_Mm2 SINE B2 1 186 -9 2 1085 576 0 0 0 chr5 65633615 65633679 -86903580 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 2 1085 1044 106 0 32 chr5 65633679 65633865 -86903394 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1085 650 44 120 11 chr5 65633999 65634091 -86903168 + B1_Mm SINE Alu 45 146 -1 2 1085 261 0 0 0 chr5 65634096 65634125 -86903134 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 2 1085 1349 234 52 19 chr5 65634944 65635310 -86901949 - MTEa LTR MaLR -1 378 1 2 1085 635 248 83 0 chr5 65635676 65635833 -86901426 - L1MB3 LINE L1 -127 6056 5887 2 1085 229 254 127 0 chr5 65635961 65636024 -86901235 + PB1D7 SINE Alu 25 95 -25 2 1085 782 184 6 0 chr5 65636031 65636210 -86901049 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 2 1085 539 72 0 23 chr5 65636207 65636293 -86900966 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 2 1085 618 68 0 0 chr5 65636663 65636751 -86900508 + (TG)n Simple_repeat Simple_repeat 2 89 0 2 1085 480 269 22 44 chr5 65636796 65636932 -86900327 - RSINE1 SINE B4 -31 134 2 2 1085 276 292 94 91 chr5 65637469 65637776 -86899483 - MER102b DNA MER1_type -11 330 2 2 1085 683 185 77 0 chr5 65638451 65638581 -86898678 + B1_Mur1 SINE Alu 7 146 -3 2 1085 474 257 62 41 chr5 65638581 65638597 -86898662 + B4 SINE B4 92 240 -52 2 1085 754 188 201 16 chr5 65638838 65639027 -86898232 + ID_B1 SINE B4 1 224 0 2 1085 628 282 32 42 chr5 65639260 65639449 -86897810 + B4A SINE B4 106 292 0 2 1085 326 264 16 0 chr5 65639450 65639571 -86897688 + (CATATA)n Simple_repeat Simple_repeat 6 128 0 2 1085 537 279 7 58 chr5 65639575 65639764 -86897495 - B3A SINE B2 -34 182 12 2 1085 1034 59 81 0 chr5 65641099 65641235 -86896024 + B1_Mus2 SINE Alu 1 147 0 2 1085 209 298 16 2 chr5 65641538 65641614 -86895645 - MIR SINE MIR -110 166 85 2 1085 231 189 153 42 chr5 65643120 65643192 -86894067 - ID4_ SINE ID -3 80 1 2 1085 292 65 43 0 chr5 65643981 65644027 -86893232 - B1F SINE Alu 0 149 102 2 1085 496 244 35 49 chr5 65644191 65644333 -86892926 - B1F2 SINE Alu -9 140 1 2 1085 369 0 0 0 chr5 65644372 65644413 -86892846 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1085 306 294 75 11 chr5 65644418 65644511 -86892748 - B3A SINE B2 -53 145 47 2 1085 291 54 0 0 chr5 65644527 65644564 -86892695 + (CCCCCA)n Simple_repeat Simple_repeat 1 37 0 3 1085 316 308 110 8 chr5 65644806 65644924 -86892335 + MER3 DNA MER1_type 45 174 -35 3 1085 729 194 21 0 chr5 65645360 65645504 -86891755 + B1_Mur2 SINE Alu 3 149 0 3 1085 895 134 0 29 chr5 65645516 65645654 -86891605 + B1_Mus2 SINE Alu 9 142 -5 3 1085 627 279 81 37 chr5 65646593 65646839 -86890420 - MER68 LTR ERVL -118 445 189 3 1085 477 261 151 10 chr5 65647165 65647435 -86889824 - MER58B DNA MER1_type 0 341 27 3 1085 260 304 132 18 chr5 65647781 65647895 -86889364 - Charlie5 DNA MER1_type -2497 127 1 3 1085 838 158 7 14 chr5 65648575 65648716 -86888543 + B1_Mur4 SINE Alu 1 140 -10 3 1085 261 0 0 0 chr5 65649738 65649767 -86887492 + (TTTTG)n Simple_repeat Simple_repeat 4 32 0 3 1085 891 78 76 23 chr5 65649767 65649889 -86887370 - B1_Mm SINE Alu -16 131 2 3 1085 249 218 200 0 chr5 65650355 65650410 -86886849 - RSINE1 SINE B4 -99 66 1 3 1085 218 347 116 0 chr5 65650410 65650500 -86886759 - PB1D7 SINE Alu -13 107 7 3 1085 249 139 0 0 chr5 65651893 65651936 -86885323 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1085 1194 61 0 0 chr5 65651936 65652083 -86885176 - B1_Mus2 SINE Alu 0 147 1 3 1085 685 269 90 54 chr5 65655012 65655291 -86881968 + B4A SINE B4 1 289 -3 3 1085 1897 75 0 0 chr5 65655958 65656197 -86881062 + L1_Mus1 LINE L1 6329 6567 0 3 1085 364 261 10 42 chr5 65656223 65656319 -86880940 + MT2B LTR ERVL 164 256 -345 3 1085 701 138 83 15 chr5 65656234 65656366 -86880893 + B1_Mur3 SINE Alu 9 149 0 3 1085 312 189 87 78 chr5 65656472 65656584 -86880675 + B1F SINE Alu 12 124 -25 3 1085 226 341 2 0 chr5 65656584 65656665 -86880594 + BC1_Mm scRNA scRNA 2 83 0 3 1085 256 241 29 3 chr5 65657759 65657839 -86879420 + B4 SINE B4 4 87 -78 3 1085 532 258 32 0 chr5 65657977 65658101 -86879158 + B1_Mur1 SINE Alu 1 128 -21 3 1085 544 14 27 0 chr5 65658101 65658174 -86879085 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 1085 1046 78 0 37 chr5 65658193 65658380 -86878879 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1085 649 208 69 0 chr5 65658922 65659052 -86878207 + B1_Mm SINE Alu 9 147 0 3 1085 265 282 33 56 chr5 65660645 65660735 -86876524 + MLT1A LTR MaLR 278 365 -9 3 1085 576 257 135 31 chr5 65660843 65661036 -86876223 + B4A SINE B4 3 215 -77 3 1085 547 272 123 6 chr5 65661045 65661208 -86876051 + B3A SINE B2 1 182 -16 3 1085 777 260 5 22 chr5 65661254 65661439 -86875820 + B3A SINE B2 1 182 -16 3 1085 838 71 16 0 chr5 65661451 65661578 -86875681 + (TC)n Simple_repeat Simple_repeat 1 129 0 3 1085 623 179 70 56 chr5 65661590 65661732 -86875527 + B1_Mur2 SINE Alu 1 144 -5 3 1085 1217 119 0 0 chr5 65662039 65662207 -86875052 + B2_Mm2 SINE B2 2 169 -26 3 1085 756 86 0 0 chr5 65662208 65662313 -86874946 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 3 1085 647 140 70 9 chr5 65662647 65662762 -86874497 - B1_Mur3 SINE Alu -8 141 20 3 1085 348 229 45 62 chr5 65662666 65662778 -86874481 - MT2B LTR ERVL -323 278 169 3 1085 302 328 50 64 chr5 65662762 65662865 -86874394 - ID_B1 SINE B4 -8 216 2 3 1085 211 0 28 56 chr5 65662924 65662960 -86874299 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 3 1085 592 229 49 14 chr5 65662961 65663103 -86874156 - B1F1 SINE Alu -1 148 2 3 1085 227 104 43 43 chr5 65663203 65663273 -86873986 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 3 1085 354 45 0 0 chr5 65663276 65663320 -86873939 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1085 198 91 0 0 chr5 65663320 65663353 -86873906 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 3 1085 240 258 0 61 chr5 65663804 65663870 -86873389 + L1MC1 LINE L1 5487 5548 -796 3 1085 334 259 70 21 chr5 65663890 65664032 -86873227 + L1MC1 LINE L1 5650 5798 -535 3 1085 316 288 148 35 chr5 65664065 65664180 -86873079 + ID_B1 SINE B4 91 218 -6 3 1085 306 230 167 87 chr5 65664180 65664194 -86873065 + B1F1 SINE Alu 51 149 0 3 1085 618 284 125 14 chr5 65664203 65664349 -86872910 + L1MC1 LINE L1 5836 5990 -343 3 1085 1521 52 10 35 chr5 65664349 65664548 -86872711 + B2_Mm2 SINE B2 1 194 -1 3 1085 618 284 125 14 chr5 65664548 65664680 -86872579 + L1MC1 LINE L1 5991 6144 -189 3 1085 355 248 7 3 chr5 65664686 65664799 -86872460 + L1MC1 LINE L1 6257 6326 -7 3 1085 754 209 29 88 chr5 65665359 65665586 -86871673 + B3 SINE B2 8 216 0 3 1085 848 140 15 7 chr5 65665814 65665951 -86871308 + B1_Mur3 SINE Alu 11 148 -1 3 1085 312 286 0 0 chr5 65665961 65666031 -86871228 - U4 snRNA snRNA -75 70 1 3 1085 22 56 0 0 chr5 65666042 65666078 -86871181 + AT_rich Low_complexity Low_complexity 1 36 0 3 1085 1263 191 162 2 chr5 65666087 65666409 -86870850 + MTC LTR MaLR 1 365 -14 3 1085 312 316 79 50 chr5 65666413 65666553 -86870706 + RSINE1 SINE B4 11 154 -11 3 1085 26 74 0 0 chr5 65666784 65666838 -86870421 + AT_rich Low_complexity Low_complexity 1 54 0 3 1086 213 39 0 0 chr5 65667229 65667255 -86870004 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 3 1086 462 203 0 0 chr5 65667513 65667631 -86869628 + (TG)n Simple_repeat Simple_repeat 2 119 0 3 1086 429 248 10 29 chr5 65667784 65667888 -86869371 + B4 SINE B4 6 107 -185 3 1086 220 212 30 0 chr5 65667950 65668016 -86869243 + GA-rich Low_complexity Low_complexity 3 70 0 3 1086 271 188 109 0 chr5 65668946 65669010 -86868249 + Tigger7 DNA MER2_type 254 324 -2167 3 1086 2194 140 90 8 chr5 65669010 65669398 -86867861 - MTC LTR MaLR 0 421 2 3 1086 537 183 66 18 chr5 65669630 65669768 -86867491 - B1_Mur2 SINE Alu 0 149 2 3 1086 342 45 0 0 chr5 65669872 65669916 -86867343 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1086 222 250 52 13 chr5 65670520 65670597 -86866662 + L2a LINE L2 3337 3416 -10 3 1086 710 250 146 22 chr5 65671373 65671688 -86865571 + L1MB7 LINE L1 5715 6068 -116 3 1086 639 242 0 0 chr5 65671697 65671829 -86865430 + RSINE1 SINE B4 3 134 -31 3 1086 22 35 0 0 chr5 65671851 65671880 -86865379 + AT_rich Low_complexity Low_complexity 1 29 0 3 1086 613 191 8 34 chr5 65671920 65672039 -86865220 - B3 SINE B2 -100 116 1 3 1086 21 36 0 0 chr5 65672040 65672068 -86865191 + AT_rich Low_complexity Low_complexity 1 28 0 3 1086 316 219 305 0 chr5 65672282 65672446 -86864813 + L1MC4a LINE L1 7320 7533 -349 3 1086 212 86 0 28 chr5 65672833 65672869 -86864390 + (TTTTC)n Simple_repeat Simple_repeat 4 38 0 3 1086 12863 63 7 32 chr5 65672956 65675457 -86861802 + L1_Mus1 LINE L1 4141 6567 0 3 1086 21 0 0 0 chr5 65675467 65675488 -86861771 + AT_rich Low_complexity Low_complexity 1 21 0 3 1086 560 221 11 168 chr5 65675488 65675673 -86861586 + B3A SINE B2 27 182 -16 3 1086 481 216 22 76 chr5 65675707 65675860 -86861399 + B1_Mur1 SINE Alu 2 148 -1 3 1086 779 240 30 15 chr5 65676336 65676535 -86860724 - B3 SINE B2 0 216 15 3 1086 706 114 91 8 chr5 65676723 65676855 -86860404 + B1_Mus1 SINE Alu 6 148 0 3 1086 510 311 108 48 chr5 65677068 65677318 -86859941 + B4A SINE B4 1 265 -27 3 1086 327 49 0 0 chr5 65677353 65677394 -86859865 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1086 295 333 18 44 chr5 65677493 65677606 -86859653 + PB1D10 SINE Alu 2 111 -6 3 1086 244 333 0 0 chr5 65677610 65677673 -86859586 + ID4_ SINE ID 2 64 -19 3 1086 1244 101 62 0 chr5 65677742 65677921 -86859338 + B2_Mm2 SINE B2 2 191 -4 3 1086 734 245 124 17 chr5 65677925 65678166 -86859093 - MTC LTR MaLR 0 421 155 3 1086 282 29 0 0 chr5 65678825 65678860 -86858399 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1086 24 53 0 0 chr5 65678875 65678913 -86858346 + AT_rich Low_complexity Low_complexity 1 38 0 3 1086 1242 27 0 7 chr5 65680235 65680383 -86856876 + B1_Mus1 SINE Alu 2 148 0 3 1086 432 303 5 101 chr5 65680430 65680527 -86856732 - Lx6 LINE L1 -103 7357 7276 3 1086 189 0 0 0 chr5 65680527 65680548 -86856711 + (TTATA)n Simple_repeat Simple_repeat 3 23 0 3 1086 432 306 7 103 chr5 65680548 65680670 -86856589 - Lx6 LINE L1 -185 7275 7179 3 1086 566 178 70 76 chr5 65680813 65680971 -86856288 + RMER10B LTR ERVL 195 351 -47 3 1086 198 0 0 0 chr5 65680971 65680993 -86856266 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1086 503 224 164 0 chr5 65681393 65681576 -86855683 + B3 SINE B2 1 213 -3 3 1086 803 236 60 0 chr5 65681613 65681795 -86855464 + B3 SINE B2 2 194 -22 3 1086 411 269 83 15 chr5 65681825 65681957 -86855302 + B3 SINE B2 42 182 -34 3 1086 22 0 0 0 chr5 65682493 65682515 -86854744 + AT_rich Low_complexity Low_complexity 1 22 0 3 1086 285 29 0 0 chr5 65682775 65682809 -86854450 + (CTG)n Simple_repeat Simple_repeat 1 34 0 3 1086 676 248 15 0 chr5 65682809 65682942 -86854317 - B1_Mur1 SINE Alu -13 136 2 3 1086 1508 54 5 0 chr5 65683047 65683231 -86854028 - B2_Mm1a SINE B2 -8 185 1 3 1086 428 250 26 43 chr5 65683363 65683480 -86853779 - PB1D10 SINE Alu -2 115 1 3 1086 414 0 0 0 chr5 65683852 65683898 -86853361 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1086 551 226 146 0 chr5 65684070 65684207 -86853052 - RSINE1 SINE B4 -7 158 2 3 1086 284 280 56 0 chr5 65684518 65684625 -86852634 + MIR SINE MIR 74 186 -76 3 1086 248 250 29 14 chr5 65684733 65684802 -86852457 - ID4 SINE ID -13 70 1 3 1086 228 268 28 14 chr5 65685438 65685510 -86851749 + ID4_ SINE ID 9 81 -2 3 1086 526 329 70 21 chr5 65685736 65685978 -86851281 + MER2 DNA MER2_type 87 340 -5 4 1086 330 270 8 105 chr5 65685984 65686108 -86851151 + PB1 SINE Alu 14 125 -2 4 1086 256 354 0 0 chr5 65686118 65686200 -86851059 + ID4 SINE ID 2 83 0 4 1086 1194 48 7 0 chr5 65686530 65686676 -86850583 + B1_Mm SINE Alu 1 147 0 4 1086 207 0 0 0 chr5 65686679 65686702 -86850557 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1086 355 99 194 14 chr5 65686715 65686787 -86850472 + Lx2B LINE L1 6892 6976 -24 4 1086 207 0 0 0 chr5 65687604 65687627 -86849632 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1086 225 258 88 66 chr5 65687680 65687817 -86849442 + B1F SINE Alu 9 148 -1 4 1086 1195 114 23 0 chr5 65688024 65688199 -86849060 + B2_Mm2 SINE B2 2 180 -15 4 1086 452 235 172 79 chr5 65688411 65688614 -86848645 + B4A SINE B4 71 292 0 4 1086 413 283 143 14 chr5 65688935 65689075 -86848184 - RSINE1 SINE B4 -4 161 4 4 1086 267 349 47 0 chr5 65689213 65689299 -86847960 - B3A SINE B2 -22 176 87 4 1086 767 209 7 7 chr5 65689361 65689510 -86847749 - B1_Mur1 SINE Alu 0 149 1 4 1086 232 268 0 0 chr5 65689537 65689593 -86847666 - B1_Mur2 SINE Alu -13 136 81 4 1086 210 118 0 0 chr5 65689593 65689627 -86847632 + (GGGGA)n Simple_repeat Simple_repeat 5 38 0 4 1086 675 178 88 15 chr5 65690119 65690256 -86847003 - B1F2 SINE Alu -2 147 1 4 1086 334 137 361 0 chr5 65690615 65690723 -86846536 - B2_Mm2 SINE B2 -2 193 47 4 1086 1107 75 119 0 chr5 65690771 65690931 -86846328 - B2_Mm1t SINE B2 -14 179 1 4 1086 858 87 6 47 chr5 65691142 65691312 -86845947 + (TG)n Simple_repeat Simple_repeat 1 163 0 4 1086 287 302 129 40 chr5 65691316 65691440 -86845819 - RSINE1 SINE B4 -28 137 3 4 1086 408 305 57 0 chr5 65692864 65692969 -86844290 + B1F1 SINE Alu 1 111 -38 4 1086 249 33 0 0 chr5 65692976 65693006 -86844253 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 4 1086 189 107 0 0 chr5 65693948 65693976 -86843283 + (TA)n Simple_repeat Simple_repeat 2 29 0 4 1086 291 331 27 27 chr5 65694051 65694197 -86843062 - B1F1 SINE Alu -1 148 3 4 1086 21 57 0 0 chr5 65694694 65694729 -86842530 + AT_rich Low_complexity Low_complexity 1 35 0 4 1086 690 129 6 178 chr5 65695113 65695222 -86842037 - B1_Mus1 SINE Alu -1 147 59 4 1086 864 67 0 0 chr5 65695222 65695342 -86841917 + (TC)n Simple_repeat Simple_repeat 2 121 0 4 1086 690 129 6 178 chr5 65695342 65695401 -86841858 - B1_Mus1 SINE Alu -90 58 8 4 1086 239 220 51 0 chr5 65695351 65695410 -86841849 - B4A SINE B4 -150 142 81 4 1086 361 297 42 0 chr5 65695428 65695546 -86841713 - B1F1 SINE Alu -26 123 1 4 1086 251 200 42 14 chr5 65696038 65696109 -86841150 + RSINE1 SINE B4 5 77 -88 4 1086 210 71 0 0 chr5 65696159 65696187 -86841072 + (CATA)n Simple_repeat Simple_repeat 1 28 0 4 1086 219 329 0 12 chr5 65696294 65696374 -86840885 + PB1D7 SINE Alu 1 79 -41 4 1086 668 258 35 9 chr5 65698430 65698638 -86838621 + B3A SINE B2 2 216 0 4 1086 773 124 241 0 chr5 65698743 65698888 -86838371 + B2_Mm1t SINE B2 1 180 -13 4 1086 375 90 305 10 chr5 65698933 65699034 -86838225 + B2_Mm2 SINE B2 46 181 -14 4 1086 324 264 0 0 chr5 65699066 65699138 -86838121 + ID4_ SINE ID 12 83 0 4 1086 536 146 129 65 chr5 65699182 65699237 -86838022 - B1_Mur1 SINE Alu 0 149 98 4 1086 2199 122 19 0 chr5 65699237 65699557 -86837702 - ORR1A2 LTR MaLR 0 327 2 4 1086 536 146 129 65 chr5 65699557 65699640 -86837619 - B1_Mur1 SINE Alu -52 97 2 4 1086 414 281 61 6 chr5 65699640 65699795 -86837464 + ID_B1 SINE B4 52 215 -9 4 1086 915 168 74 25 chr5 65699831 65700033 -86837226 + B3 SINE B2 1 212 -4 4 1086 966 281 81 21 chr5 65700099 65700434 -86836825 + MTE2b LTR MaLR 20 374 -5 4 1086 493 187 11 0 chr5 65700530 65700621 -86836638 + B1F1 SINE Alu 1 92 -57 4 1086 213 39 0 0 chr5 65700622 65700648 -86836611 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1086 279 159 0 0 chr5 65701131 65701173 -86836086 + B3 SINE B2 2 43 -173 4 1086 310 262 151 23 chr5 65701173 65701259 -86836000 + B1_Mus1 SINE Alu 3 99 -49 4 1086 471 195 142 0 chr5 65701261 65701374 -86835885 + B1_Mus1 SINE Alu 20 148 0 4 1086 1168 32 2 82 chr5 65701374 65701935 -86835324 + (GAA)n Simple_repeat Simple_repeat 1 515 0 4 1086 258 273 26 0 chr5 65701954 65702031 -86835228 + B3 SINE B2 27 105 -111 4 1086 406 182 0 13 chr5 65702025 65702103 -86835156 + BC1_Mm scRNA scRNA 14 90 -62 4 1086 239 254 111 0 chr5 65702114 65702177 -86835082 + ID4_ SINE ID 3 72 -11 4 1086 495 310 19 0 chr5 65702604 65702759 -86834500 + RSINE1 SINE B4 4 161 -4 4 1086 294 258 43 11 chr5 65702847 65702941 -86834318 - MLT1D LTR MaLR -158 347 251 4 1086 291 225 70 0 chr5 65703042 65703113 -86834146 + ID4_ SINE ID 2 77 -6 4 1086 639 33 22 0 chr5 65703184 65703274 -86833985 + B1_Mm SINE Alu 35 126 -21 4 1086 306 0 0 0 chr5 65703281 65703315 -86833944 + (TAA)n Simple_repeat Simple_repeat 2 35 0 4 1086 279 250 13 13 chr5 65703321 65703398 -86833861 + ID4_ SINE ID 2 78 -5 4 1086 297 0 0 0 chr5 65703398 65703431 -86833828 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 4 1086 479 284 87 7 chr5 65703535 65703684 -86833575 + RSINE1 SINE B4 2 162 -3 4 1086 299 292 0 0 chr5 65703816 65703881 -86833378 + ID4 SINE ID 1 65 -18 4 1086 414 0 0 0 chr5 65703881 65703927 -86833332 + (CATA)n Simple_repeat Simple_repeat 4 49 0 4 1086 194 108 54 0 chr5 65703927 65703964 -86833295 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 4 1086 1673 31 0 0 chr5 65705199 65705390 -86831869 + B2_Mm1t SINE B2 2 192 -1 4 1086 180 0 0 0 chr5 65705429 65705449 -86831810 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1086 394 260 45 58 chr5 65705671 65705826 -86831433 + L1MEf LINE L1 476 628 -5466 4 1086 798 298 129 11 chr5 65705923 65706296 -86830963 + MLT2B4 LTR ERVL 132 548 -8 4 1086 235 289 224 17 chr5 65706305 65706421 -86830838 + MLT1B-int LTR MaLR 3 142 -1347 4 1086 219 303 0 43 chr5 65706530 65706599 -86830660 + BC1_Mm scRNA scRNA 6 71 -81 4 1086 609 144 184 0 chr5 65706718 65706843 -86830416 + B1_Mus1 SINE Alu 1 148 0 4 1086 382 298 23 15 chr5 65706892 65707025 -86830234 + B1_Mur1 SINE Alu 3 136 -13 4 1086 881 187 10 94 chr5 65707079 65707200 -86830059 + B3 SINE B2 8 120 -96 4 1086 3024 57 20 15 chr5 65707200 65707594 -86829665 - MTA_Mm LTR MaLR 0 396 1 4 1086 881 187 10 94 chr5 65707594 65707673 -86829586 + B3 SINE B2 121 191 -25 4 1086 611 282 103 20 chr5 65707680 65707933 -86829326 + MLT1B-int LTR MaLR 382 655 -716 4 1086 392 321 204 8 chr5 65708192 65708456 -86828803 + MLT-int LTR MaLR 1316 1631 -104 4 1086 585 189 25 0 chr5 65708581 65708703 -86828556 + B1_Mur1 SINE Alu 23 147 -2 4 1086 436 279 49 25 chr5 65708785 65708947 -86828312 + MLT1B LTR MaLR 209 374 -16 4 1086 350 214 9 101 chr5 65709228 65709337 -86827922 + ID_B1 SINE B4 83 181 -43 4 1086 569 270 90 93 chr5 65709353 65709630 -86827629 + L1MEf LINE L1 1408 1686 -4514 4 1086 866 129 72 0 chr5 65709630 65709769 -86827490 - B1_Mur4 SINE Alu -1 149 1 4 1086 569 270 90 93 chr5 65709769 65709858 -86827401 + L1MEf LINE L1 1687 1773 -4427 4 1086 193 29 29 29 chr5 65710109 65710144 -86827115 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 1086 940 231 28 14 chr5 65710254 65710465 -86826794 - B3 SINE B2 -1 215 2 4 1086 980 47 71 0 chr5 65711065 65711192 -86826067 - B1_Mus2 SINE Alu -10 137 2 4 1086 804 137 15 0 chr5 65711193 65711324 -86825935 + B1_Mus1 SINE Alu 16 148 0 4 1086 21 0 0 31 chr5 65711324 65711339 -86825920 + AT_rich Low_complexity Low_complexity 1 15 0 4 1086 394 214 196 34 chr5 65711339 65711518 -86825741 + B3 SINE B2 1 208 -8 4 1086 21 0 0 31 chr5 65711518 65711534 -86825725 + AT_rich Low_complexity Low_complexity 1 16 0 4 1086 560 204 20 47 chr5 65711921 65712070 -86825189 - B1_Mur2 SINE Alu 0 149 5 4 1086 209 282 202 0 chr5 65712109 65712233 -86825026 + MIRc SINE MIR 18 166 -102 4 1086 484 231 107 0 chr5 65712451 65712572 -86824687 + ID_B1 SINE B4 91 224 0 4 1086 295 324 38 29 chr5 65712625 65712730 -86824529 + RSINE1 SINE B4 58 163 -2 4 1086 180 0 0 0 chr5 65712748 65712768 -86824491 + (TAA)n Simple_repeat Simple_repeat 2 21 0 4 1086 509 277 99 26 chr5 65713791 65713943 -86823316 - RSINE1 SINE B4 0 165 3 4 1086 366 266 44 35 chr5 65714050 65714163 -86823096 + PB1D10 SINE Alu 3 116 -1 4 1086 1182 54 14 0 chr5 65714165 65714313 -86822946 + B1_Mur4 SINE Alu 1 150 0 4 1086 449 180 25 19 chr5 65714335 65714433 -86822826 + B1_Mur2 SINE Alu 11 144 -5 4 1086 280 229 0 44 chr5 65714478 65714576 -86822683 + B1F1 SINE Alu 25 141 -8 4 1086 352 165 27 27 chr5 65714576 65714688 -86822571 + GA-rich Low_complexity Low_complexity 1 112 0 4 1086 289 308 57 16 chr5 65714695 65714817 -86822442 + ID_B1 SINE B4 78 204 -20 4 1086 823 215 5 58 chr5 65715146 65715334 -86821925 + B3A SINE B2 20 197 -1 4 1086 871 142 266 0 chr5 65715342 65715511 -86821748 + B3 SINE B2 2 215 -1 4 1086 242 38 57 19 chr5 65715512 65715565 -86821694 + (TAA)n Simple_repeat Simple_repeat 3 57 0 4 1086 309 286 0 13 chr5 65716074 65716152 -86821107 - ID4_ SINE ID -5 78 2 4 1086 373 305 39 0 chr5 65716160 65716288 -86820971 - B1F SINE Alu -7 142 10 4 1086 798 233 71 20 chr5 65716333 65716530 -86820729 + B3 SINE B2 9 215 -1 4 1086 541 229 156 0 chr5 65716557 65716679 -86820580 + B1_Mur1 SINE Alu 9 149 0 5 1086 355 200 47 141 chr5 65716769 65716869 -86820390 + PB1D10 SINE Alu 3 94 -23 5 1086 1248 97 40 0 chr5 65716869 65717044 -86820215 + B2_Mm1a SINE B2 2 183 -10 5 1086 354 200 47 141 chr5 65717044 65717071 -86820188 + B1F1 SINE Alu 92 118 -31 5 1086 727 239 122 41 chr5 65717161 65717431 -86819828 + B4A SINE B4 1 292 0 5 1086 21 0 0 0 chr5 65718096 65718117 -86819142 + AT_rich Low_complexity Low_complexity 1 21 0 5 1086 726 144 85 0 chr5 65718132 65718250 -86819009 - B1_Mus1 SINE Alu -18 130 3 5 1086 258 105 0 0 chr5 65718342 65718380 -86818879 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1086 1186 36 0 0 chr5 65718474 65718612 -86818647 - B1_Mus2 SINE Alu -8 139 2 5 1086 252 0 0 0 chr5 65718883 65718911 -86818348 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1086 323 161 259 0 chr5 65718922 65719003 -86818256 - B1F2 SINE Alu -16 133 32 5 1086 1119 175 23 14 chr5 65719074 65719288 -86817971 - B3 SINE B2 0 216 1 5 1086 791 152 14 14 chr5 65719319 65719459 -86817800 - URR1B DNA MER1_type -84 141 2 5 1086 445 248 314 0 chr5 65720074 65720195 -86817064 + RSINE1 SINE B4 3 161 -4 5 1086 383 280 99 25 chr5 65720253 65720374 -86816885 + ID_B1 SINE B4 84 213 -11 5 1086 408 188 214 0 chr5 65720506 65720623 -86816636 + B1_Mus1 SINE Alu 7 148 0 5 1086 329 314 70 32 chr5 65720662 65720820 -86816439 + B3A SINE B2 5 168 -30 5 1086 183 129 0 0 chr5 65720956 65720987 -86816272 + (CAGAGA)n Simple_repeat Simple_repeat 6 36 0 5 1086 609 184 3 43 chr5 65721653 65721796 -86815463 - B1_Mus1 SINE Alu 0 148 16 5 1086 663 135 164 60 chr5 65721923 65722057 -86815202 - B1_Mur3 SINE Alu -1 148 1 5 1086 263 314 55 35 chr5 65722159 65722304 -86814955 + Charlie4z DNA MER1_type 20 167 0 5 1086 29 0 0 0 chr5 65722414 65722443 -86814816 + AT_rich Low_complexity Low_complexity 1 29 0 5 1086 955 222 14 19 chr5 65722445 65722656 -86814603 - B3 SINE B2 -6 210 1 5 1086 396 278 61 1 chr5 65722662 65722782 -86814477 - B3A SINE B2 -14 202 77 5 1086 386 272 39 0 chr5 65722822 65722925 -86814334 - ID_B1 SINE B4 -6 218 112 5 1086 325 278 104 0 chr5 65722925 65722937 -86814322 - B1F SINE Alu -6 143 17 5 1086 621 200 37 30 chr5 65723005 65723139 -86814120 + B1_Mur1 SINE Alu 2 136 -13 5 1086 709 249 34 48 chr5 65723236 65723443 -86813816 - B4A SINE B4 -87 205 2 5 1086 1040 202 5 5 chr5 65723476 65723680 -86813579 + B3 SINE B2 9 212 -4 5 1086 249 246 17 50 chr5 65723703 65723763 -86813496 - B3A SINE B2 -97 101 44 5 1086 25 41 0 20 chr5 65723785 65723807 -86813452 + AT_rich Low_complexity Low_complexity 1 22 0 5 1086 1584 42 0 20 chr5 65723807 65724003 -86813256 + B2_Mm1a SINE B2 2 193 0 5 1086 25 41 0 20 chr5 65724003 65724030 -86813229 + AT_rich Low_complexity Low_complexity 1 27 0 5 1086 282 158 53 0 chr5 65724101 65724158 -86813101 + PB1D7 SINE Alu 12 71 -49 5 1086 1058 44 81 0 chr5 65724233 65724369 -86812890 + B1_Mus2 SINE Alu 1 147 0 5 1086 1130 69 0 20 chr5 65724544 65724692 -86812567 + B1_Mus2 SINE Alu 1 145 -2 5 1086 850 168 0 20 chr5 65724845 65724997 -86812262 + B1_Mur2 SINE Alu 1 149 0 5 1086 909 243 10 0 chr5 65725024 65725226 -86812033 + B3 SINE B2 1 204 -12 5 1086 845 148 0 0 chr5 65725226 65725361 -86811898 - B1_Mur4 SINE Alu -5 145 11 5 1086 575 213 244 17 chr5 65725378 65725550 -86811709 + B3 SINE B2 3 213 -3 5 1086 696 292 0 48 chr5 65725562 65725789 -86811470 + B3A SINE B2 1 216 0 5 1086 22 0 0 0 chr5 65726876 65726898 -86810361 + GC_rich Low_complexity Low_complexity 1 22 0 5 1086 645 290 72 5 chr5 65727449 65727657 -86809602 - ID_B1 SINE B4 -2 222 1 5 1086 1299 98 49 0 chr5 65727701 65727885 -86809374 + B2_Mm2 SINE B2 1 193 -2 5 1086 221 170 19 19 chr5 65728074 65728128 -86809131 - B4A SINE B4 -152 140 87 5 1086 476 187 9 18 chr5 65728389 65728498 -86808761 - PB1D9 SINE Alu 0 120 13 5 1086 260 235 46 23 chr5 65728425 65728512 -86808747 - B4 SINE B4 -123 169 81 5 1086 182 264 198 0 chr5 65728635 65728726 -86808533 + MIR SINE MIR 31 139 -123 5 1086 205 261 0 0 chr5 65728770 65728816 -86808443 + (TGG)n Simple_repeat Simple_repeat 1 46 0 5 1086 350 250 19 94 chr5 65728839 65728945 -86808314 - PB1D10 SINE Alu -10 107 10 5 1086 264 59 0 0 chr5 65729101 65729135 -86808124 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1086 303 246 29 0 chr5 65729436 65729505 -86807754 + B1_Mur3 SINE Alu 2 72 -77 5 1086 328 293 205 7 chr5 65729565 65729716 -86807543 + B3 SINE B2 1 181 -35 5 1086 952 120 52 52 chr5 65729745 65729938 -86807321 - B2_Mm2 SINE B2 -1 194 2 5 1086 25 31 0 0 chr5 65729943 65729975 -86807284 + AT_rich Low_complexity Low_complexity 1 32 0 5 1086 1866 115 81 19 chr5 65729980 65730290 -86806969 - ORR1A4 LTR MaLR 0 329 1 5 1086 652 236 7 7 chr5 65730328 65730469 -86806790 + B1_Mm SINE Alu 1 141 -6 5 1086 1379 62 78 0 chr5 65730520 65730538 -86806721 - B2_Mm1t SINE B2 0 193 176 5 1086 186 43 0 0 chr5 65730538 65730561 -86806698 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 1086 1379 62 78 0 chr5 65730561 65730721 -86806538 - B2_Mm1t SINE B2 -18 175 2 5 1086 722 265 55 32 chr5 65730724 65730942 -86806317 - ID_B1 SINE B4 -1 223 1 5 1086 22 0 0 0 chr5 65731937 65731959 -86805300 + AT_rich Low_complexity Low_complexity 1 22 0 5 1086 228 224 17 0 chr5 65732038 65732096 -86805163 - ID4_ SINE ID -13 70 12 5 1086 430 241 26 65 chr5 65732182 65732337 -86804922 - B1_Mur3 SINE Alu 0 149 1 5 1086 540 214 0 8 chr5 65732221 65732339 -86804920 - ID_B1 SINE B4 -28 196 80 5 1086 478 302 78 5 chr5 65732724 65732917 -86804342 - B4A SINE B4 -83 209 3 5 1086 360 308 18 36 chr5 65732957 65733068 -86804191 + PB1 SINE Alu 12 120 -7 5 1086 274 282 14 0 chr5 65733068 65733139 -86804120 + GA-rich Low_complexity Low_complexity 3 74 0 5 1086 284 143 15 45 chr5 65733365 65733431 -86803828 + PB1 SINE Alu 64 127 0 5 1086 392 181 0 122 chr5 65733478 65733585 -86803674 - PB1D9 SINE Alu -15 105 12 5 1086 865 113 25 102 chr5 65733667 65733824 -86803435 + B1_Mur3 SINE Alu 2 146 -3 5 1086 269 224 0 0 chr5 65733854 65733912 -86803347 + B1_Mur2 SINE Alu 41 98 -51 5 1086 21 82 0 0 chr5 65733938 65733987 -86803272 + AT_rich Low_complexity Low_complexity 1 49 0 5 1086 527 258 32 40 chr5 65734013 65734138 -86803121 + RSINE1 SINE B4 13 136 -29 5 1086 484 231 28 0 chr5 65734325 65734433 -86802826 + B1_Mus2 SINE Alu 36 146 -1 5 1086 1374 45 57 0 chr5 65734444 65734620 -86802639 - B2_Mm2 SINE B2 -8 187 2 5 1086 483 165 33 11 chr5 65734878 65734970 -86802289 + PB1 SINE Alu 29 122 -5 5 1086 686 251 54 14 chr5 65734993 65735215 -86802044 + L1MB3 LINE L1 5846 6076 -107 5 1086 331 233 0 43 chr5 65735359 65735453 -86801806 - PB1D7 SINE Alu -1 119 30 5 1086 256 282 14 0 chr5 65735447 65735518 -86801741 - ID SINE ID -152 72 1 5 1086 410 0 0 20 chr5 65735610 65735661 -86801598 + (TTG)n Simple_repeat Simple_repeat 2 51 0 5 1086 217 215 277 11 chr5 65735661 65735687 -86801572 - B1F SINE Alu -9 140 22 5 1086 274 235 44 0 chr5 65735687 65735755 -86801504 - ID_B1 SINE B4 -51 173 103 5 1086 381 296 22 71 chr5 65736021 65736203 -86801056 - B4A SINE B4 -118 174 2 5 1086 953 231 54 67 chr5 65736225 65736303 -86800956 - ID_B1 SINE B4 -3 221 157 5 1086 1089 130 10 63 chr5 65736303 65736509 -86800750 - B2_Mm2 SINE B2 0 195 1 5 1086 953 231 54 67 chr5 65736509 65736653 -86800606 - ID_B1 SINE B4 -68 156 2 5 1086 482 71 34 34 chr5 65736824 65736912 -86800347 - L1Md_F2 LINE L1 -2 6580 6493 5 1086 617 211 16 0 chr5 65737410 65737533 -86799726 - B1_Mur1 SINE Alu -16 133 9 5 1086 503 246 50 124 chr5 65737430 65737648 -86799611 - B4 SINE B4 -90 202 1 5 1086 475 277 83 40 chr5 65737657 65737909 -86799350 - L1MC LINE L1 -1773 4373 4111 5 1086 327 65 0 0 chr5 65737963 65738009 -86799250 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1086 237 210 81 0 chr5 65738012 65738074 -86799185 - L1MC LINE L1 -2044 4102 4036 5 1086 961 209 48 14 chr5 65738140 65738349 -86798910 - B3 SINE B2 0 216 1 5 1086 249 108 0 0 chr5 65738377 65738414 -86798845 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1086 1474 72 0 15 chr5 65738424 65738622 -86798637 + B2_Mm2 SINE B2 1 195 0 5 1086 317 243 29 3 chr5 65738658 65738749 -86798510 + B1F SINE Alu 46 144 -5 5 1086 334 256 13 0 chr5 65738762 65738840 -86798419 + ID4 SINE ID 5 83 0 5 1086 339 302 0 10 chr5 65738901 65738998 -86798261 - ID_B1 SINE B4 -24 200 105 5 1086 290 284 83 10 chr5 65739029 65739125 -86798134 - B1F1 SINE Alu -7 142 40 5 1086 21 36 0 0 chr5 65741661 65741689 -86795570 + AT_rich Low_complexity Low_complexity 1 28 0 5 1086 612 254 0 0 chr5 65741921 65742063 -86795196 - RSINE1 SINE B4 -14 151 10 5 1086 519 17 0 0 chr5 65742290 65742350 -86794909 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1086 408 82 0 56 chr5 65742657 65742747 -86794512 + (TTTTG)n Simple_repeat Simple_repeat 1 85 0 5 1086 1070 58 73 0 chr5 65742747 65742884 -86794375 - B1_Mus2 SINE Alu 0 147 1 5 1086 682 317 18 5 chr5 65742887 65743106 -86794153 - ID_B1 SINE B4 -1 223 2 6 1086 215 255 0 0 chr5 65743299 65743350 -86793909 - MIRb SINE MIR -79 189 139 6 1086 327 147 29 24 chr5 65743738 65743824 -86793435 - B3 SINE B2 -111 87 1 6 1086 466 310 7 0 chr5 65743942 65744084 -86793175 - RSINE1 SINE B4 -22 143 1 6 1086 697 197 204 43 chr5 65744189 65744375 -86792884 - B3 SINE B2 0 216 1 6 1086 345 230 24 41 chr5 65744475 65744598 -86792661 - MLT1K LTR MaLR 0 610 494 6 1086 422 209 47 0 chr5 65744701 65744787 -86792472 + B1_Mur1 SINE Alu 52 141 -8 6 1086 509 265 0 41 chr5 65744856 65744978 -86792281 + PB1D10 SINE Alu 1 117 0 6 1086 283 303 185 39 chr5 65745222 65745476 -86791783 + Charlie21a DNA MER1_type 52 342 -871 6 1086 589 248 4 122 chr5 65745487 65745717 -86791542 - MER20 DNA MER1_type -1 218 16 6 1086 1618 27 5 0 chr5 65745921 65746105 -86791154 - B2_Mm1t SINE B2 -7 186 2 6 1086 713 187 65 0 chr5 65746135 65746274 -86790985 + B1_Mur3 SINE Alu 1 148 -1 6 1086 656 195 105 41 chr5 65746299 65746470 -86790789 + B3A SINE B2 1 182 -16 6 1086 696 215 15 0 chr5 65746523 65746653 -86790606 + B1_Mur2 SINE Alu 1 132 -17 6 1086 645 14 0 0 chr5 65746677 65746751 -86790508 + (GAAA)n Simple_repeat Simple_repeat 4 77 0 6 1086 411 313 26 9 chr5 65746751 65746867 -86790392 + PB1D7 SINE Alu 3 120 0 6 1086 672 245 12 77 chr5 65746885 65747053 -86790206 + RSINE1 SINE B4 9 165 0 6 1086 1182 61 0 0 chr5 65747253 65747400 -86789859 + B1_Mus2 SINE Alu 1 147 0 6 1086 1211 54 0 0 chr5 65747556 65747703 -86789556 - B1_Mm SINE Alu 0 147 1 6 1086 861 139 0 46 chr5 65747730 65747881 -86789378 - B1_Mur4 SINE Alu 0 150 7 6 1086 593 274 14 0 chr5 65747893 65748039 -86789220 + B1_Mur2 SINE Alu 2 149 0 6 1086 441 344 6 6 chr5 65748064 65748225 -86789034 - RSINE1 SINE B4 -2 163 3 6 1086 233 312 69 64 chr5 65748234 65748422 -86788837 + Charlie21a DNA MER1_type 1024 1212 -1 6 1086 649 200 8 0 chr5 65748676 65748801 -86788458 - B1_Mur2 SINE Alu -23 126 1 6 1086 257 295 9 95 chr5 65748698 65748814 -86788445 - MT2B LTR ERVL -344 257 152 6 1086 382 263 140 0 chr5 65748820 65748934 -86788325 + ID_B1 SINE B4 88 217 -7 6 1086 24 0 0 0 chr5 65748942 65748966 -86788293 + AT_rich Low_complexity Low_complexity 1 24 0 6 1086 799 156 7 0 chr5 65748970 65749105 -86788154 + B1_Mur4 SINE Alu 15 150 0 6 1086 369 242 163 64 chr5 65749144 65749316 -86787943 + B3A SINE B2 9 197 -1 6 1086 1157 76 0 0 chr5 65749515 65749660 -86787599 + B1_Mus2 SINE Alu 1 145 -2 6 1086 188 35 35 0 chr5 65749660 65749689 -86787570 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 6 1086 262 290 54 0 chr5 65749891 65749984 -86787275 + PB1D10 SINE Alu 19 116 -1 6 1086 3407 28 5 2 chr5 65750000 65750395 -86786864 + MTA_Mm LTR MaLR 1 396 0 6 1086 1232 48 0 0 chr5 65750456 65750601 -86786658 - B1_Mus2 SINE Alu 0 147 3 6 1086 243 235 29 14 chr5 65750829 65750898 -86786361 - B4A SINE B4 -21 271 202 6 1086 274 202 37 12 chr5 65751083 65751166 -86786093 - B1_Mus2 SINE Alu 0 147 31 6 1086 198 0 0 0 chr5 65751211 65751233 -86786026 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 6 1086 183 42 0 0 chr5 65751447 65751471 -86785788 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1086 1161 36 0 0 chr5 65751471 65751608 -86785651 - B1_Mus2 SINE Alu -10 137 1 6 1086 441 117 0 0 chr5 65751683 65751760 -86785499 + L1_Mus3 LINE L1 6556 6632 -6 6 1086 256 270 130 38 chr5 65751954 65752085 -86785174 + B4A SINE B4 77 219 -73 6 1086 552 151 134 0 chr5 65751971 65752090 -86785169 + B1_Mur4 SINE Alu 13 147 -3 6 1086 710 259 82 26 chr5 65752125 65752394 -86784865 + B4A SINE B4 1 284 -8 6 1086 252 0 0 0 chr5 65752465 65752493 -86784766 + (TAA)n Simple_repeat Simple_repeat 2 29 0 6 1086 383 256 182 0 chr5 65752717 65752838 -86784421 + B1F1 SINE Alu 7 149 0 6 1086 1080 118 0 12 chr5 65752945 65753117 -86784142 - B2_Mm2 SINE B2 -25 170 1 6 1086 222 263 121 0 chr5 65753457 65753556 -86783703 - PB1D10 SINE Alu -6 111 1 6 1086 520 172 101 126 chr5 65753573 65753593 -86783666 - Lx4B LINE L1 0 7058 7039 6 1086 294 50 0 0 chr5 65753593 65753633 -86783626 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 6 1086 520 181 119 111 chr5 65753633 65753873 -86783386 - Lx4B LINE L1 -20 7038 6689 6 1086 189 132 0 0 chr5 65754060 65754098 -86783161 + (TATG)n Simple_repeat Simple_repeat 1 38 0 6 1086 404 222 80 36 chr5 65754098 65754210 -86783049 - PB1D7 SINE Alu -3 117 1 6 1086 327 150 0 0 chr5 65754210 65754270 -86782989 + (TTCA)n Simple_repeat Simple_repeat 4 63 0 6 1086 204 40 0 0 chr5 65754297 65754322 -86782937 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 6 1086 1488 131 188 7 chr5 65754323 65754616 -86782643 - ORR1B1 LTR MaLR -2 392 47 6 1086 415 246 215 16 chr5 65754645 65754831 -86782428 - ID_B1 SINE B4 0 224 2 6 1086 590 203 8 0 chr5 65755009 65755127 -86782132 + PB1D9 SINE Alu 2 120 0 6 1086 218 351 31 31 chr5 65755204 65755301 -86781958 + MIRb SINE MIR 101 197 -71 6 1086 531 0 0 0 chr5 65755522 65755581 -86781678 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1086 243 0 0 0 chr5 65755583 65755610 -86781649 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 6 1086 398 256 94 42 chr5 65756207 65756300 -86780959 - ID_B1 SINE B4 0 224 121 6 1086 605 47 12 0 chr5 65756300 65756385 -86780874 + (TCC)n Simple_repeat Simple_repeat 3 88 0 6 1086 398 256 94 42 chr5 65756385 65756503 -86780756 - ID_B1 SINE B4 -104 120 2 6 1086 898 163 27 0 chr5 65756666 65756813 -86780446 - Lx5 LINE L1 -168 6882 6732 6 1086 556 272 13 75 chr5 65756865 65757024 -86780235 + RSINE1 SINE B4 16 164 -1 6 1086 278 118 39 0 chr5 65757196 65757247 -86780012 + (CATA)n Simple_repeat Simple_repeat 4 56 0 6 1086 743 226 75 80 chr5 65757262 65757474 -86779785 - B3 SINE B2 -5 211 1 6 1086 914 153 0 0 chr5 65757511 65757642 -86779617 - B1_Mus1 SINE Alu -17 131 1 6 1086 22 0 0 0 chr5 65757647 65757669 -86779590 + AT_rich Low_complexity Low_complexity 1 22 0 6 1086 550 271 14 7 chr5 65758004 65758145 -86779114 - B1F1 SINE Alu 0 149 8 6 1086 306 0 0 0 chr5 65758300 65758334 -86778925 + (TAG)n Simple_repeat Simple_repeat 2 35 0 6 1086 688 206 0 6 chr5 65758334 65758478 -86778781 - B1_Mur1 SINE Alu -8 141 5 6 1086 394 211 0 31 chr5 65759696 65759794 -86777465 - PB1D10 SINE Alu -22 95 1 6 1086 234 0 128 21 chr5 65760223 65760270 -86776989 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1086 644 227 73 73 chr5 65760500 65760761 -86776498 + Lx7 LINE L1 6854 7114 -582 6 1086 935 16 0 61 chr5 65760851 65760983 -86776276 + B1_Mus1 SINE Alu 25 148 0 6 1086 723 213 37 0 chr5 65761011 65761147 -86776112 + B1_Mur2 SINE Alu 5 145 -4 6 1086 2221 59 10 0 chr5 65761168 65761458 -86775801 + L1_Mus2 LINE L1 6274 6566 0 6 1086 447 277 27 0 chr5 65761475 65761587 -86775672 + PB1D7 SINE Alu 1 115 -5 6 1086 561 221 95 69 chr5 65761715 65761736 -86775523 + ID SINE ID 26 46 -178 6 1086 715 208 207 6 chr5 65761736 65761905 -86775354 + B3 SINE B2 3 205 -11 6 1086 561 221 95 69 chr5 65761905 65762072 -86775187 + ID_B1 SINE B4 47 217 -7 6 1086 189 107 0 0 chr5 65762235 65762263 -86774996 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1086 1079 73 0 0 chr5 65762276 65762413 -86774846 - B1_Mus2 SINE Alu -10 137 1 6 1086 310 272 32 11 chr5 65762783 65762864 -86774395 + B4 SINE B4 1 83 -209 6 1086 387 0 0 0 chr5 65762864 65762907 -86774352 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1086 310 272 32 11 chr5 65762907 65762918 -86774341 + B4 SINE B4 84 94 -198 6 1086 540 231 36 66 chr5 65762919 65763086 -86774173 + RSINE1 SINE B4 2 163 -2 6 1086 480 281 37 16 chr5 65763741 65763929 -86773330 - B3A SINE B2 -6 192 1 6 1086 330 26 0 0 chr5 65763948 65763987 -86773272 + (TTGG)n Simple_repeat Simple_repeat 2 40 0 6 1086 428 217 0 0 chr5 65764376 65764468 -86772791 + B4 SINE B4 3 94 -198 6 1086 546 238 82 0 chr5 65764468 65764615 -86772644 + RSINE1 SINE B4 1 159 -6 6 1086 501 184 36 0 chr5 65764622 65764790 -86772469 + (CA)n Simple_repeat Simple_repeat 1 174 0 6 1086 237 65 0 0 chr5 65765198 65765229 -86772030 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1086 1185 61 0 0 chr5 65765230 65765377 -86771882 - B1_Mus1 SINE Alu -1 147 1 6 1086 629 165 37 0 chr5 65765377 65765486 -86771773 - B2_Mm2 SINE B2 -82 113 1 6 1086 690 237 21 98 chr5 65765624 65765858 -86771401 + B3 SINE B2 1 216 0 6 1086 573 163 0 0 chr5 65765902 65765994 -86771265 - B1_Mur3 SINE Alu -57 92 1 6 1086 252 312 13 0 chr5 65766001 65766078 -86771181 - MIR3 SINE MIR -15 193 116 6 1086 725 214 14 28 chr5 65766395 65766539 -86770720 - B1_Mur1 SINE Alu -7 142 1 6 1086 388 306 73 0 chr5 65766651 65766775 -86770484 - RSINE1 SINE B4 -31 134 2 6 1086 632 197 176 0 chr5 65767300 65767442 -86769817 - ORR1C1 LTR MaLR 0 378 212 6 1086 277 119 0 0 chr5 65767441 65767483 -86769776 - ORR1C1 LTR MaLR -325 42 1 6 1086 354 210 136 0 chr5 65767485 65767566 -86769693 - B3 SINE B2 -25 191 100 6 1086 369 86 0 0 chr5 65767566 65767624 -86769635 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1086 400 310 31 12 chr5 65767686 65767846 -86769413 - RSINE1 SINE B4 0 165 3 6 1086 694 104 121 9 chr5 65767869 65767985 -86769274 - B1_Mur3 SINE Alu -4 145 17 6 1086 299 77 19 0 chr5 65768659 65768711 -86768548 - B1_Mur4 SINE Alu 0 150 98 7 1086 612 309 21 10 chr5 65768859 65769052 -86768207 + ID_B1 SINE B4 1 195 -29 7 1086 213 39 0 0 chr5 65769066 65769092 -86768167 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 7 1086 206 265 0 0 chr5 65769092 65769141 -86768118 + A-rich Low_complexity Low_complexity 1 49 0 7 1086 319 281 25 42 chr5 65769355 65769474 -86767785 - PB1D10 SINE Alu 0 117 1 7 1086 1191 55 7 0 chr5 65769881 65770027 -86767232 - B1_Mus1 SINE Alu -1 147 1 7 1086 291 158 11 146 chr5 65771358 65771379 -86765880 + MT2B LTR ERVL 148 224 -377 7 1086 508 73 0 0 chr5 65771379 65771447 -86765812 + B1_Mus1 SINE Alu 1 68 -80 7 1086 741 201 27 14 chr5 65771558 65771704 -86765555 - B1_Mur2 SINE Alu -1 148 1 7 1086 250 225 178 11 chr5 65771730 65771820 -86765439 - PB1D9 SINE Alu -3 117 13 7 1086 1261 107 6 6 chr5 65771822 65772001 -86765258 + B2_Mm1t SINE B2 1 179 -14 7 1086 1068 82 7 40 chr5 65772074 65772226 -86765033 + B1_Mus2 SINE Alu 1 147 0 7 1086 291 109 321 47 chr5 65772248 65772354 -86764905 + B2_Mm2 SINE B2 61 195 0 7 1086 350 229 10 30 chr5 65772611 65772710 -86764549 - ID4_ SINE ID -48 104 8 7 1086 258 297 31 0 chr5 65772714 65772778 -86764481 - ID_B1 SINE B4 -129 95 30 7 1086 729 208 27 14 chr5 65772840 65772986 -86764273 - B1_Mur2 SINE Alu -1 148 1 7 1086 229 281 146 0 chr5 65773017 65773106 -86764153 - PB1D10 SINE Alu -3 114 13 7 1086 459 113 0 0 chr5 65773109 65773180 -86764079 + B2_Mm2 SINE B2 1 71 -124 7 1086 698 131 0 8 chr5 65773180 65773303 -86763956 + B1_Mur4 SINE Alu 28 149 -1 7 1086 186 43 0 0 chr5 65773335 65773358 -86763901 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1086 204 40 0 0 chr5 65773426 65773451 -86763808 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1086 1081 62 0 70 chr5 65773451 65773607 -86763652 - B1_Mus2 SINE Alu 0 147 3 7 1086 965 166 133 20 chr5 65773669 65773872 -86763387 + URR1A DNA MER1_type 1 226 0 7 1086 678 262 42 5 chr5 65773900 65774092 -86763167 + ID_B1 SINE B4 2 200 -24 7 1086 1332 88 22 0 chr5 65774173 65774355 -86762904 - B2_Mm2 SINE B2 -9 186 1 7 1086 381 226 0 47 chr5 65774379 65774486 -86762773 - Lx2B LINE L1 -19 6981 6880 7 1086 859 174 14 0 chr5 65775291 65775435 -86761824 - B1_Mur2 SINE Alu -3 146 1 7 1086 967 76 0 0 chr5 65775603 65775734 -86761525 + B1_Mus1 SINE Alu 16 146 -2 7 1086 252 0 0 0 chr5 65775734 65775762 -86761497 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 7 1086 845 140 14 14 chr5 65775906 65776044 -86761215 - B1_Mur3 SINE Alu -9 140 3 7 1086 878 173 208 0 chr5 65776074 65776242 -86761017 + B3 SINE B2 3 205 -11 7 1086 1039 99 14 7 chr5 65776714 65776857 -86760402 - B1_Mus1 SINE Alu 0 148 5 7 1086 850 225 53 0 chr5 65777032 65777219 -86760040 - B3 SINE B2 -14 202 6 7 1086 512 253 141 31 chr5 65777344 65777507 -86759752 - B3 SINE B2 -25 191 11 7 1086 404 201 36 0 chr5 65777682 65777778 -86759481 - B1F1 SINE Alu 0 120 21 7 1086 372 244 97 62 chr5 65777806 65777950 -86759309 - B1F SINE Alu 0 149 1 7 1086 422 159 383 0 chr5 65778880 65778987 -86758272 + B2_Mm2 SINE B2 11 158 -37 7 1086 273 140 100 0 chr5 65779038 65779088 -86758171 + B2_Mm2 SINE B2 47 101 -94 7 1086 232 257 200 0 chr5 65783179 65783284 -86753975 - B1F SINE Alu -16 133 8 7 1086 231 254 162 60 chr5 65783284 65783296 -86753963 - ID_B1 SINE B4 -16 208 80 7 1086 207 0 0 0 chr5 65783673 65783696 -86753563 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1086 1137 43 58 0 chr5 65783699 65783838 -86753421 - B1_Mus1 SINE Alu 0 148 2 7 1086 312 27 0 0 chr5 65783845 65783882 -86753377 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1086 775 199 27 0 chr5 65784026 65784172 -86753087 - B1_Mur4 SINE Alu 0 150 1 7 1086 923 155 0 20 chr5 65784243 65784394 -86752865 - B1_Mur1 SINE Alu -1 148 1 7 1086 207 0 0 0 chr5 65784638 65784661 -86752598 + (TTG)n Simple_repeat Simple_repeat 2 24 0 7 1086 388 270 0 43 chr5 65784673 65784766 -86752493 - ID_B1 SINE B4 -4 220 132 7 1086 248 318 8 93 chr5 65784766 65784787 -86752472 - PB1D7 SINE Alu -1 115 12 7 1086 373 293 0 25 chr5 65785342 65785461 -86751798 - ID_B1 SINE B4 -1 223 108 7 1086 811 236 34 132 chr5 65785702 65785734 -86751525 + B3 SINE B2 6 34 -182 7 1086 1226 83 72 0 chr5 65785734 65785914 -86751345 + B2_Mm1t SINE B2 1 193 0 7 1086 811 236 34 132 chr5 65785914 65786115 -86751144 + B3 SINE B2 35 216 0 7 1086 200 233 0 0 chr5 65786120 65786163 -86751096 + T-rich Low_complexity Low_complexity 1 43 0 7 1086 816 168 35 0 chr5 65786165 65786308 -86750951 - B1_Mus1 SINE Alu 0 148 1 7 1086 1269 74 74 0 chr5 65786319 65786494 -86750765 - B2_Mm1a SINE B2 -4 189 2 7 1086 301 250 21 32 chr5 65786904 65786999 -86750260 - L1MEc LINE L1 -5022 1378 1285 7 1086 481 260 110 0 chr5 65787074 65787220 -86750039 + RSINE1 SINE B4 1 162 -3 7 1086 1110 114 7 0 chr5 65787270 65787419 -86749840 + B1_Mur4 SINE Alu 1 150 0 7 1086 184 72 23 45 chr5 65787419 65787463 -86749796 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 7 1086 916 148 21 0 chr5 65787632 65787774 -86749485 - B1_Mur4 SINE Alu -5 145 1 7 1086 346 191 132 0 chr5 65787820 65787888 -86749371 - B3A SINE B2 -114 84 8 7 1086 572 248 0 0 chr5 65787895 65788004 -86749255 - PB1D10 SINE Alu -8 109 1 7 1086 192 77 0 0 chr5 65788027 65788053 -86749206 + (ATG)n Simple_repeat Simple_repeat 1 26 0 7 1086 591 203 49 0 chr5 65788072 65788195 -86749064 - RSINE1 SINE B4 -35 130 2 7 1086 1211 55 0 0 chr5 65788320 65788466 -86748793 - B1_Mus2 SINE Alu 0 147 2 7 1086 1227 111 61 0 chr5 65788525 65788543 -86748716 - B2_Mm2 SINE B2 -2 193 165 7 1086 180 0 0 0 chr5 65788543 65788563 -86748696 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7 1086 1227 111 61 0 chr5 65788563 65788725 -86748534 - B2_Mm2 SINE B2 -31 164 3 7 1086 435 173 0 0 chr5 65789164 65789245 -86748014 + CT-rich Low_complexity Low_complexity 1 81 0 7 1086 574 171 122 15 chr5 65789259 65789390 -86747869 - B1_Mur2 SINE Alu 0 149 5 7 1086 897 115 54 0 chr5 65789548 65789678 -86747581 + B1_Mur4 SINE Alu 1 137 -13 7 1086 506 211 87 31 chr5 65789736 65789863 -86747396 + B3 SINE B2 83 216 0 7 1086 853 146 22 0 chr5 65790050 65790187 -86747072 + B1_Mur1 SINE Alu 10 149 0 7 1086 232 204 20 0 chr5 65791360 65791409 -86745850 + B3A SINE B2 2 51 -147 7 1086 367 245 47 47 chr5 65791549 65791648 -86745611 + PB1D10 SINE Alu 11 112 -5 7 1086 603 174 97 15 chr5 65791648 65791782 -86745477 + B1_Mur1 SINE Alu 1 145 -4 7 1086 479 276 39 8 chr5 65792126 65792254 -86745005 + RSINE1 SINE B4 3 134 -31 7 1086 477 90 0 0 chr5 65792269 65792336 -86744923 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 1086 264 258 53 53 chr5 65792375 65792469 -86744790 + PB1D10 SINE Alu 17 110 -7 7 1086 662 195 146 22 chr5 65792618 65792796 -86744463 - B3 SINE B2 -15 201 2 7 1086 1188 55 0 0 chr5 65793259 65793405 -86743854 - B1_Mm SINE Alu 0 147 2 7 1086 833 204 29 6 chr5 65793572 65793745 -86743514 - URR1B DNA MER1_type 0 225 49 7 1086 194 300 53 53 chr5 65794569 65794664 -86742595 - L3 LINE CR1 -2264 2225 2131 7 1086 1256 34 0 0 chr5 65794677 65794823 -86742436 + B1_Mus2 SINE Alu 2 147 0 7 1086 195 129 0 0 chr5 65794931 65794962 -86742297 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1086 286 203 108 0 chr5 65795826 65795900 -86741359 + ID4_ SINE ID 2 83 0 7 1086 824 286 22 27 chr5 65796010 65796233 -86741026 + B4 SINE B4 55 276 -16 7 1086 1372 89 21 5 chr5 65797181 65797373 -86739886 - B2_Mm2 SINE B2 0 195 1 7 1086 303 293 12 0 chr5 65797468 65797550 -86739709 + ID4_ SINE ID 1 83 0 7 1086 186 43 0 0 chr5 65797759 65797782 -86739477 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1086 258 217 117 45 chr5 65797834 65797945 -86739314 + PB1D7 SINE Alu 1 119 -1 7 135 253 195 64 13 chr5 65798081 65798159 -86739100 + Lx8 LINE L1 7379 7460 -13 7 1087 216 0 0 0 chr5 65798173 65798197 -86739062 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7 1087 359 109 0 40 chr5 65798212 65798279 -86738980 - B2_Mm2 SINE B2 -107 109 47 7 1087 1283 114 11 0 chr5 65798342 65798518 -86738741 - B2_Mm1t SINE B2 -14 179 2 7 1087 718 57 32 24 chr5 65798621 65798747 -86738512 + (CATA)n Simple_repeat Simple_repeat 2 128 0 7 1087 692 224 0 87 chr5 65798848 65799009 -86738250 - B1_Mur1 SINE Alu -1 148 2 7 1087 247 314 118 8 chr5 65798903 65799022 -86738237 - ID_B1 SINE B4 -23 201 70 7 1087 207 204 0 0 chr5 65800192 65800236 -86737023 + A-rich Low_complexity Low_complexity 1 44 0 7 1087 261 98 0 0 chr5 65800449 65800490 -86736769 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1087 261 186 85 0 chr5 65800602 65800661 -86736598 + Lx8 LINE L1 7211 7274 -199 7 1087 734 185 82 6 chr5 65800663 65800821 -86736438 - URR1A DNA MER1_type 0 226 57 7 1087 272 244 154 0 chr5 65801048 65801126 -86736133 + PB1D7 SINE Alu 6 95 -25 8 1087 518 211 89 0 chr5 65801164 65801287 -86735972 - ID_B1 SINE B4 0 224 91 8 1087 391 248 94 16 chr5 65801485 65801612 -86735647 - B1F SINE Alu -11 138 2 8 1087 291 111 0 0 chr5 65802298 65802343 -86734916 - B3A SINE B2 -153 45 1 8 1087 195 42 0 0 chr5 65802344 65802368 -86734891 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 8 1087 399 195 98 0 chr5 65802368 65802450 -86734809 - ID_B1 SINE B4 -13 211 122 8 1087 364 283 27 45 chr5 65802480 65802591 -86734668 - RSINE1 SINE B4 -2 163 55 8 1087 493 250 72 22 chr5 65802733 65802872 -86734387 - RSINE1 SINE B4 -18 147 2 8 1087 441 111 0 0 chr5 65803120 65803183 -86734076 - B1_Mur4 SINE Alu 0 150 88 8 1087 853 75 8 0 chr5 65803475 65803591 -86733668 + B1_Mus1 SINE Alu 33 148 0 8 1087 431 178 175 19 chr5 65803625 65803728 -86733531 + B3A SINE B2 1 119 -79 8 1087 610 289 24 8 chr5 65803873 65804047 -86733212 + B3 SINE B2 2 185 -10 8 1087 351 305 30 30 chr5 65804095 65804227 -86733032 + RSINE1 SINE B4 3 134 -31 8 1087 480 230 31 47 chr5 65804271 65804399 -86732860 + RSINE1 SINE B4 11 136 -29 8 1087 277 289 135 38 chr5 65805446 65805491 -86731768 - B4A SINE B4 -53 239 94 8 1087 376 159 136 0 chr5 65805491 65805579 -86731680 - PB1D7 SINE Alu -12 108 9 8 1087 247 111 182 18 chr5 65805694 65805749 -86731510 - B1_Mur4 SINE Alu 0 150 87 8 1087 350 316 0 26 chr5 65805729 65805750 -86731509 - B3 SINE B2 -101 115 95 8 1087 225 0 0 0 chr5 65805750 65805775 -86731484 + (CATA)n Simple_repeat Simple_repeat 1 25 0 8 1087 387 220 0 8 chr5 65805775 65805870 -86731389 - B2_Mm2 SINE B2 -122 94 2 8 1087 320 280 43 64 chr5 65806046 65806080 -86731179 - B1_Mur1 SINE Alu -11 138 1 8 1087 361 280 19 0 chr5 65806080 65806187 -86731072 - ID_B1 SINE B4 -34 190 82 8 1087 1576 41 10 5 chr5 65806249 65806443 -86730816 - B2_Mm2 SINE B2 0 195 1 8 1087 653 234 124 12 chr5 65806450 65806619 -86730640 - B3 SINE B2 0 216 29 8 1087 324 0 0 0 chr5 65806628 65806664 -86730595 + (TTAG)n Simple_repeat Simple_repeat 3 38 0 8 1087 584 158 85 34 chr5 65806665 65806783 -86730476 - B1_Mm SINE Alu -10 137 14 8 1087 414 234 104 58 chr5 65807834 65807988 -86729271 + RSINE1 SINE B4 3 163 -2 8 1087 378 143 0 0 chr5 65809006 65809069 -86728190 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1087 330 26 0 0 chr5 65809300 65809339 -86727920 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1087 526 147 0 82 chr5 65809514 65809611 -86727648 - B1_Mur1 SINE Alu -22 127 38 8 1087 685 214 42 14 chr5 65810018 65810160 -86727099 + B1_Mus2 SINE Alu 2 147 0 8 1087 237 285 168 10 chr5 65810778 65810912 -86726347 + MIRm SINE MIR 88 246 -16 8 1087 304 257 27 13 chr5 65811023 65811098 -86726161 + B1_Mur2 SINE Alu 62 137 -12 8 1087 483 221 88 0 chr5 65811101 65811214 -86726045 + ID_B1 SINE B4 91 213 -11 8 1087 232 211 0 0 chr5 65811719 65811757 -86725502 + ID_B1 SINE B4 162 199 -25 8 1087 528 292 56 23 chr5 65812091 65812305 -86724954 - MER58A DNA MER1_type -3 221 1 8 1087 462 18 0 0 chr5 65812714 65812769 -86724490 + (TG)n Simple_repeat Simple_repeat 1 55 0 8 1087 258 189 0 54 chr5 65812772 65812828 -86724431 - ID4_ SINE ID -30 53 1 8 1087 383 257 38 150 chr5 65812987 65813120 -86724139 + B1F SINE Alu 2 119 -8 8 1087 497 229 93 0 chr5 65813202 65813320 -86723939 - RSINE1 SINE B4 -34 131 3 8 1087 872 227 64 0 chr5 65813347 65813550 -86723709 - B3 SINE B2 0 216 1 8 1087 208 128 0 78 chr5 65813558 65813594 -86723665 + T-rich Low_complexity Low_complexity 12 47 0 8 1087 845 164 64 0 chr5 65813594 65813734 -86723525 - B1_Mur4 SINE Alu 0 150 2 8 1087 208 128 0 78 chr5 65813734 65813748 -86723511 + T-rich Low_complexity Low_complexity 1 11 0 8 1087 441 0 0 0 chr5 65814280 65814329 -86722930 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1087 278 301 94 39 chr5 65815494 65815516 -86721743 + ID_B1 SINE B4 65 199 -25 8 1087 285 311 142 0 chr5 65815516 65815622 -86721637 + B1F1 SINE Alu 1 121 -28 8 1087 22 56 0 0 chr5 65815884 65815920 -86721339 + AT_rich Low_complexity Low_complexity 1 36 0 8 1087 845 174 14 27 chr5 65815923 65816071 -86721188 + B1_Mus2 SINE Alu 1 146 -1 8 1087 204 125 0 0 chr5 65816119 65816151 -86721108 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1087 1022 232 19 15 chr5 65816219 65816425 -86720834 + B3 SINE B2 1 207 -9 8 1087 456 19 0 0 chr5 65816453 65816506 -86720753 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1087 519 250 8 55 chr5 65816541 65816668 -86720591 - RSINE1 SINE B4 -17 148 28 8 1087 1571 53 16 0 chr5 65816862 65817052 -86720207 + B2_Mm1t SINE B2 1 193 0 8 1087 882 160 41 7 chr5 65817260 65817405 -86719854 - B1_Mur4 SINE Alu 0 150 1 8 1087 343 250 56 11 chr5 65817578 65817667 -86719592 - PB1D9 SINE Alu -1 119 27 8 1087 519 200 121 9 chr5 65817669 65817785 -86719474 - B1_Mur3 SINE Alu -18 131 3 8 1087 316 235 302 18 chr5 65817795 65817964 -86719295 - ID_B1 SINE B4 -6 218 2 8 1087 491 252 135 21 chr5 65818113 65818263 -86718996 - B1F SINE Alu -5 144 1 8 1087 286 273 0 29 chr5 65818203 65818271 -86718988 - B4A SINE B4 -147 145 80 8 1087 212 238 175 0 chr5 65818265 65818345 -86718914 - BC1_Mm scRNA scRNA -48 104 11 8 1087 432 221 118 30 chr5 65818391 65818526 -86718733 - B1F2 SINE Alu 0 149 3 8 1087 750 174 28 21 chr5 65819095 65819236 -86718023 + B1_Mur4 SINE Alu 1 142 -8 8 1087 759 224 0 0 chr5 65819272 65819451 -86717808 + GA-rich Low_complexity Low_complexity 2 180 0 8 1087 219 139 0 0 chr5 65819464 65819500 -86717759 + (GGA)n Simple_repeat Simple_repeat 2 37 0 8 1087 351 296 164 81 chr5 65819631 65819929 -86717330 + MLT1A1 LTR MaLR 26 348 -17 8 1087 400 269 180 0 chr5 65820034 65820201 -86717058 - B4A SINE B4 -93 199 3 8 1087 456 19 0 0 chr5 65820596 65820649 -86716610 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1087 387 253 84 0 chr5 65820742 65820837 -86716422 - RSINE1 SINE B4 -61 104 2 8 1087 289 325 100 70 chr5 65821006 65821150 -86716109 - RLTR21 LTR ERVK -319 1253 1100 8 1087 549 186 123 33 chr5 65821150 65821272 -86715987 - B1_Mur1 SINE Alu -15 134 2 8 1087 289 325 100 70 chr5 65821272 65821428 -86715831 - RLTR21 LTR ERVK -473 1099 944 8 1087 920 118 27 14 chr5 65821814 65821960 -86715299 + B1_Mur3 SINE Alu 1 148 -1 8 1087 338 276 160 25 chr5 65822071 65822190 -86715069 + RSINE1 SINE B4 2 136 -29 8 1087 375 23 0 0 chr5 65822883 65822927 -86714332 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1087 479 246 114 41 chr5 65822927 65823050 -86714209 + B1_Mur1 SINE Alu 18 149 0 8 1087 832 281 28 35 chr5 65823058 65823143 -86714116 + MER2 DNA MER2_type 91 176 -169 8 1087 368 302 57 7 chr5 65823143 65823283 -86713976 - B1F SINE Alu -2 147 1 8 1087 832 281 28 35 chr5 65823283 65823452 -86713807 + MER2 DNA MER2_type 177 343 -2 8 1087 953 227 44 0 chr5 65823626 65823829 -86713430 + B3 SINE B2 3 214 -2 8 1087 21 57 0 0 chr5 65824102 65824137 -86713122 + AT_rich Low_complexity Low_complexity 1 35 0 8 1087 274 292 102 42 chr5 65824140 65824154 -86713105 - ID_B1 SINE B4 -96 128 4 8 1087 481 186 29 19 chr5 65824154 65824258 -86713001 - B3 SINE B2 -108 108 4 8 1087 185 364 0 15 chr5 65824285 65824352 -86712907 + L2a LINE L2 3345 3410 -16 8 1087 226 268 123 27 chr5 65824503 65824576 -86712683 - ID4_ SINE ID -2 81 2 8 1087 479 230 30 0 chr5 65824777 65824877 -86712382 - PB1D7 SINE Alu -17 103 1 8 1087 1076 95 0 0 chr5 65825047 65825195 -86712064 + B1_Mus1 SINE Alu 1 148 0 8 1087 427 233 96 22 chr5 65825319 65825455 -86711804 - RSINE1 SINE B4 -12 153 8 8 1087 207 0 0 0 chr5 65826127 65826150 -86711109 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1087 492 18 0 0 chr5 65827831 65827888 -86709371 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1087 287 319 53 0 chr5 65827986 65828099 -86709160 + B3A SINE B2 59 177 -21 8 1087 419 278 43 57 chr5 65828139 65828280 -86708979 - B1F1 SINE Alu -6 143 5 8 1087 252 229 184 46 chr5 65828688 65828775 -86708484 + B3A SINE B2 1 99 -99 8 1087 1219 48 7 0 chr5 65828821 65828967 -86708292 - B1_Mus2 SINE Alu 0 147 1 8 1087 341 277 72 0 chr5 65829037 65829120 -86708139 + B3A SINE B2 97 185 -13 8 1087 1061 207 43 17 chr5 65829425 65829656 -86707603 - RMER5 LTR ERV1 -297 237 1 8 1087 333 152 0 17 chr5 65829743 65829803 -86707456 - B1_Mus2 SINE Alu 0 147 89 8 1087 254 30 0 0 chr5 65829797 65829830 -86707429 - B3A SINE B2 -165 33 1 8 1087 731 154 73 0 chr5 65829923 65830046 -86707213 - B1_Mur1 SINE Alu -11 138 7 8 1087 817 198 9 65 chr5 65830135 65830351 -86706908 - RMER10B LTR ERVL -1 397 194 8 1087 198 0 0 0 chr5 65830351 65830373 -86706886 + (GA)n Simple_repeat Simple_repeat 1 22 0 8 1087 1119 169 25 83 chr5 65830374 65830652 -86706607 - RMER10B LTR ERVL -131 267 6 8 1087 1679 21 0 25 chr5 65830837 65831035 -86706224 + B2_Mm1a SINE B2 1 193 0 8 1087 699 281 113 19 chr5 65831212 65831477 -86705782 - B4A SINE B4 0 292 3 8 1087 239 360 174 5 chr5 65831609 65831799 -86705460 + Charlie2a DNA MER1_type 210 431 -2430 9 1087 264 286 29 0 chr5 65831814 65831884 -86705375 + ID4_ SINE ID 1 72 -11 9 1087 2002 36 71 0 chr5 65832044 65832296 -86704963 - MTB LTR MaLR -1 399 130 9 1087 479 303 38 31 chr5 65832296 65832456 -86704803 - RSINE1 SINE B4 -2 163 3 9 1087 1278 63 46 0 chr5 65832880 65833054 -86704205 - B2_Mm2 SINE B2 -3 192 11 9 1087 559 225 138 11 chr5 65833143 65833311 -86703948 + B3 SINE B2 3 194 -22 9 1087 185 0 40 0 chr5 65833311 65833336 -86703923 + (CATA)n Simple_repeat Simple_repeat 3 28 0 9 1087 559 225 138 11 chr5 65833336 65833356 -86703903 + B3 SINE B2 195 214 -2 9 1087 479 193 132 0 chr5 65833361 65833475 -86703784 - B1F2 SINE Alu -2 147 19 9 1087 340 237 16 56 chr5 65833542 65833667 -86703592 - Lx8 LINE L1 -1 7472 7353 9 1087 210 37 0 0 chr5 65833785 65833812 -86703447 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1087 813 74 198 0 chr5 65834007 65834128 -86703131 - B1_Mus2 SINE Alu -1 146 2 9 1087 552 198 9 26 chr5 65834136 65834250 -86703009 - Lx8 LINE L1 -135 7338 7227 9 1087 336 217 14 0 chr5 65834263 65834332 -86702927 - RSINE1 SINE B4 -93 72 3 9 1087 450 94 0 0 chr5 65835828 65835892 -86701367 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 1087 195 139 0 0 chr5 65836397 65836433 -86700826 + (C)n Simple_repeat Simple_repeat 1 36 0 9 1087 326 230 67 13 chr5 65836957 65837032 -86700227 - PB1D7 SINE Alu 0 120 42 9 1087 1155 36 0 0 chr5 65837328 65837465 -86699794 + B1_Mus2 SINE Alu 2 138 -9 9 1087 627 269 58 19 chr5 65837735 65837940 -86699319 - ID_B1 SINE B4 -7 217 5 9 1087 463 194 73 9 chr5 65839217 65839326 -86697933 + PB1D9 SINE Alu 2 117 -3 9 1087 650 202 237 0 chr5 65839609 65839782 -86697477 - B3 SINE B2 0 216 3 9 1087 303 266 0 25 chr5 65839981 65840062 -86697197 - B1F SINE Alu 0 149 71 9 1087 24 0 0 0 chr5 65840832 65840856 -86696403 + AT_rich Low_complexity Low_complexity 1 24 0 9 1087 1234 34 0 0 chr5 65842362 65842508 -86694751 + B1_Mm SINE Alu 2 147 0 9 1087 387 250 43 0 chr5 65842621 65842713 -86694546 + B1F SINE Alu 45 140 -9 9 1087 198 0 0 0 chr5 65842806 65842828 -86694431 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1087 1693 16 5 0 chr5 65843301 65843489 -86693770 + B2_Mm1a SINE B2 2 190 -3 9 1087 849 210 34 14 chr5 65843591 65843799 -86693460 - ID_B1 SINE B4 -5 219 8 9 1087 900 177 223 0 chr5 65843912 65844087 -86693172 - B3 SINE B2 -1 215 2 9 1087 463 284 0 0 chr5 65844133 65844235 -86693024 - PB1D7 SINE Alu -7 113 12 9 1087 590 216 59 54 chr5 65844895 65845081 -86692178 + B3A SINE B2 1 187 -11 9 1087 603 236 29 0 chr5 65845113 65845253 -86692006 + B1_Mur1 SINE Alu 6 149 0 9 1087 213 137 19 38 chr5 65845253 65845306 -86691953 + A-rich Low_complexity Low_complexity 4 55 0 9 1087 257 237 40 0 chr5 65845689 65845765 -86691494 - ID4_ SINE ID -4 79 1 9 1087 315 230 0 13 chr5 65845858 65845933 -86691326 - RSINE1 SINE B4 -38 127 54 9 1087 198 355 41 34 chr5 65846249 65846395 -86690864 + MER5A DNA MER1_type 21 167 -22 9 1087 208 111 44 0 chr5 65846867 65846912 -86690347 + CT-rich Low_complexity Low_complexity 2 48 0 9 1087 189 0 0 0 chr5 65847300 65847321 -86689938 + (TG)n Simple_repeat Simple_repeat 1 21 0 9 1087 442 296 49 73 chr5 65847330 65847494 -86689765 - RSINE1 SINE B4 -5 160 1 9 1087 215 241 162 12 chr5 65847520 65847600 -86689659 - PB1D10 SINE Alu -25 92 1 9 1087 232 27 0 51 chr5 65847715 65847754 -86689505 + (CAG)n Simple_repeat Simple_repeat 3 39 0 9 1087 292 172 17 0 chr5 65847830 65847888 -86689371 + B1F SINE Alu 72 130 -19 9 1087 662 196 64 21 chr5 65848862 65849003 -86688256 + B1_Mur1 SINE Alu 2 148 -1 9 1087 236 236 149 11 chr5 65849262 65849356 -86687903 - L2 LINE L2 -1082 2337 2231 9 1087 574 245 96 93 chr5 65849530 65849800 -86687459 + B4 SINE B4 4 274 -18 9 1087 397 278 31 76 chr5 65849881 65850033 -86687226 + B1_Mur2 SINE Alu 1 147 -2 9 1087 1137 64 0 0 chr5 65850051 65850191 -86687068 + B1_Mus1 SINE Alu 1 140 -8 9 1087 507 123 0 0 chr5 65850192 65850273 -86686986 + (GA)n Simple_repeat Simple_repeat 2 82 0 9 1087 658 250 39 28 chr5 65850546 65850679 -86686580 - ID_B1 SINE B4 -3 221 85 9 1087 201 121 0 0 chr5 65850679 65850712 -86686547 + (TA)n Simple_repeat Simple_repeat 2 34 0 9 1087 658 250 39 28 chr5 65850712 65850759 -86686500 - ID SINE ID -140 84 39 9 1087 222 128 0 0 chr5 65850788 65850827 -86686432 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1087 228 35 0 0 chr5 65851075 65851104 -86686155 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1087 441 250 0 9 chr5 65851372 65851481 -86685778 - PB1D10 SINE Alu -1 116 9 9 1087 363 289 0 20 chr5 65851611 65851710 -86685549 + ID_B1 SINE B4 82 178 -46 9 1087 794 177 88 33 chr5 65852003 65852184 -86685075 - B3 SINE B2 -25 191 1 9 1087 351 204 111 10 chr5 65852184 65852283 -86684976 - ID_B1 SINE B4 -4 220 112 9 1087 188 242 130 43 chr5 65852454 65852523 -86684736 + MIRb SINE MIR 101 175 -93 9 1087 686 96 10 0 chr5 65852723 65852827 -86684432 + (TA)n Simple_repeat Simple_repeat 2 106 0 9 1087 968 106 0 0 chr5 65852833 65852974 -86684285 - B1_Mur3 SINE Alu 0 149 9 9 1087 969 127 18 6 chr5 65853038 65853205 -86684054 + B2_Mm2 SINE B2 27 195 0 9 1087 1397 80 32 5 chr5 65853225 65853414 -86683845 + B2_Mm2 SINE B2 2 195 0 9 1087 275 181 31 31 chr5 65853546 65853643 -86683616 + (CATA)n Simple_repeat Simple_repeat 2 98 0 9 1087 518 105 392 19 chr5 65853689 65853796 -86683463 - B1_Mus1 SINE Alu 0 148 2 9 1087 347 246 9 18 chr5 65853872 65853984 -86683275 + (CA)n Simple_repeat Simple_repeat 1 111 0 9 1087 560 202 0 18 chr5 65854028 65854139 -86683120 - B1_Mus1 SINE Alu -38 110 2 9 1087 30 0 0 0 chr5 65854139 65854169 -86683090 + AT_rich Low_complexity Low_complexity 1 30 0 9 1087 573 201 82 2 chr5 65854196 65854330 -86682929 - B1_Mur1 SINE Alu 0 148 9 9 1087 1186 39 0 0 chr5 65854370 65854523 -86682736 + B2_Mm2 SINE B2 2 154 -41 9 1087 468 0 0 0 chr5 65854526 65854578 -86682681 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 1087 429 193 303 0 chr5 65854878 65854987 -86682272 + B1_Mur1 SINE Alu 1 142 -7 9 1087 198 0 0 0 chr5 65854987 65855009 -86682250 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 9 1087 1122 57 38 0 chr5 65855171 65855329 -86681930 - B2_Mm2 SINE B2 -5 190 27 9 1087 1323 66 55 6 chr5 65855330 65855513 -86681746 - B2_Mm1t SINE B2 0 193 2 9 1087 317 306 114 60 chr5 65855514 65855698 -86681561 - B4A SINE B4 -96 196 3 9 1087 23 0 0 0 chr5 65856102 65856125 -86681134 + AT_rich Low_complexity Low_complexity 1 23 0 9 1087 529 243 58 63 chr5 65856196 65856385 -86680874 + B3A SINE B2 6 193 -5 9 1087 500 123 246 34 chr5 65856405 65856523 -86680736 - B1_Mm SINE Alu 0 147 5 9 1087 220 86 86 0 chr5 65856530 65856565 -86680694 - B3A SINE B2 -159 39 2 9 1087 796 186 169 0 chr5 65856640 65856817 -86680442 - B3 SINE B2 -9 207 1 9 1087 451 117 65 0 chr5 65856890 65856967 -86680292 + B1_Mur4 SINE Alu 69 150 0 9 1087 243 0 0 0 chr5 65857001 65857028 -86680231 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 9 1087 378 0 0 0 chr5 65857152 65857194 -86680065 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1087 313 216 175 54 chr5 65857200 65857366 -86679893 - B3 SINE B2 -30 186 1 9 1087 280 228 211 35 chr5 65857448 65857600 -86679659 - L1M2 LINE L1 -1343 4800 4612 9 1087 567 275 153 10 chr5 65857604 65857905 -86679354 - L1M2 LINE L1 -3595 2548 2205 9 1087 639 255 44 74 chr5 65857917 65858120 -86679139 - B3A SINE B2 0 198 2 9 1087 1567 185 72 35 chr5 65858150 65858497 -86678762 + RMER21A LTR ERV1 1 360 -587 9 1087 581 167 28 0 chr5 65858727 65858835 -86678424 + B1_Mur4 SINE Alu 1 111 -39 9 1087 241 238 48 36 chr5 65858801 65858884 -86678375 - B1_Mur4 SINE Alu -64 86 3 9 1087 1026 216 225 23 chr5 65859225 65859571 -86677688 + MTD LTR MaLR 2 417 -2 9 1087 1080 45 8 0 chr5 65859779 65859913 -86677346 + B1_Mus1 SINE Alu 1 135 -13 9 1087 207 0 0 0 chr5 65859913 65859936 -86677323 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 9 1087 896 205 39 14 chr5 65860372 65860580 -86676679 + B3 SINE B2 1 213 -3 9 1087 858 228 64 10 chr5 65860657 65860861 -86676398 + B3 SINE B2 1 215 -1 9 1087 1148 68 0 7 chr5 65860909 65861057 -86676202 - B1_Mus2 SINE Alu 0 147 1 9 1087 270 250 50 50 chr5 65861092 65861172 -86676087 + L1MEc LINE L1 45 124 -6276 9 1087 486 242 75 19 chr5 65861172 65861332 -86675927 + B3 SINE B2 2 170 -46 9 1087 270 0 0 0 chr5 65861346 65861376 -86675883 + (TC)n Simple_repeat Simple_repeat 1 30 0 9 1087 225 0 0 0 chr5 65861376 65861400 -86675859 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1087 201 74 0 0 chr5 65861476 65861503 -86675756 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 9 1087 513 211 0 0 chr5 65861540 65861630 -86675629 - B3 SINE B2 -80 136 47 9 1087 1025 107 0 19 chr5 65861952 65862114 -86675145 + B2_Mm2 SINE B2 1 159 -36 9 1087 387 0 0 0 chr5 65862114 65862157 -86675102 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 9 1087 561 42 0 0 chr5 65862161 65862233 -86675026 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 1 1087 259 263 7 175 chr5 65862271 65862414 -86674845 + PB1 SINE Alu 2 120 -7 1 1087 362 225 128 40 chr5 65862828 65862953 -86674306 - ID_B1 SINE B4 -8 216 81 1 1087 642 183 122 0 chr5 65863420 65863551 -86673708 + B1_Mur4 SINE Alu 4 150 0 1 1087 343 291 130 34 chr5 65863913 65864059 -86673200 + ID_B1 SINE B4 2 161 -63 1 1087 435 228 126 69 chr5 65864114 65864288 -86672971 + B3A SINE B2 2 185 -10 1 1087 986 78 0 14 chr5 65864318 65864450 -86672809 + B1_Mus1 SINE Alu 7 138 -10 1 1087 198 0 0 0 chr5 65864450 65864472 -86672787 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1087 312 27 0 0 chr5 65864728 65864765 -86672494 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1087 609 221 61 0 chr5 65865703 65865834 -86671425 - B1_Mur1 SINE Alu -2 147 9 1 1087 669 249 21 48 chr5 65866019 65866205 -86671054 + B3A SINE B2 2 182 -16 1 1087 25 31 0 0 chr5 65866466 65866498 -86670761 + AT_rich Low_complexity Low_complexity 1 32 0 1 1087 429 209 27 54 chr5 65866501 65866612 -86670647 + B1_Mus1 SINE Alu 28 135 -13 1 1087 462 79 0 0 chr5 65866619 65866682 -86670577 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 1 1087 195 42 0 0 chr5 65866682 65866706 -86670553 + (CGGA)n Simple_repeat Simple_repeat 1 24 0 1 1087 261 0 0 0 chr5 65866707 65866736 -86670523 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1 1087 219 246 27 14 chr5 65866767 65866841 -86670418 + B1_Mm SINE Alu 65 139 -8 1 1087 333 0 0 0 chr5 65867160 65867197 -86670062 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1087 520 242 97 63 chr5 65867513 65867720 -86669539 + B3 SINE B2 3 216 0 1 1087 346 194 159 41 chr5 65867750 65867895 -86669364 + RSINE1 SINE B4 4 165 0 1 1087 1155 35 7 40 chr5 65868299 65868450 -86668809 + B1_Mus1 SINE Alu 3 148 0 1 1087 569 229 119 39 chr5 65868476 65868644 -86668615 + B3 SINE B2 9 189 -4 1 1087 2299 70 7 10 chr5 65868673 65868964 -86668295 - L1_Mus3 LINE L1 -655 5981 5694 1 1087 4042 80 118 5 chr5 65868964 65869558 -86667701 + L1_Mus3 LINE L1 5978 6638 0 1 1087 2299 70 7 10 chr5 65869558 65869571 -86667688 - L1_Mus4 LINE L1 -943 5693 5679 1 1087 314 319 175 12 chr5 65869606 65869857 -86667402 - B4A SINE B4 0 292 1 1 1087 657 150 58 0 chr5 65870075 65870195 -86667064 + B1_Mur4 SINE Alu 1 127 -23 1 1087 306 253 71 12 chr5 65870174 65870258 -86667001 - B1_Mur4 SINE Alu -60 90 2 1 1087 576 231 26 50 chr5 65870275 65870466 -86666793 - B3 SINE B2 0 195 1 1 1087 351 65 0 0 chr5 65870487 65870533 -86666726 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 1 1087 256 283 64 21 chr5 65870535 65870629 -86666630 - PB1D7 SINE Alu 0 120 23 1 1087 439 296 50 6 chr5 65870761 65870921 -86666338 - Tigger7 DNA MER2_type -2021 470 304 1 1087 356 314 32 8 chr5 65870942 65871067 -86666192 - Tigger7 DNA MER2_type -2240 251 124 1 1087 382 321 55 60 chr5 65871182 65871381 -86665878 - B4 SINE B4 -64 228 31 1 1087 306 229 0 101 chr5 65871383 65871482 -86665777 + PB1D9 SINE Alu 11 99 -21 1 1087 303 269 84 45 chr5 65871492 65871701 -86665558 + ID_B1 SINE B4 2 234 -58 1 1087 204 40 0 0 chr5 65871701 65871726 -86665533 + (CATA)n Simple_repeat Simple_repeat 4 28 0 1 1087 270 286 136 77 chr5 65871726 65871789 -86665470 + B4A SINE B4 235 290 -2 1 1087 294 256 98 0 chr5 65871787 65871869 -86665390 + ID_B1 SINE B4 133 222 -2 1 1087 336 296 65 0 chr5 65872353 65872461 -86664798 + RSINE1 SINE B4 3 117 -48 1 1087 330 148 0 0 chr5 65872512 65872563 -86664696 + (T)n Simple_repeat Simple_repeat 1 51 0 1 1087 1156 55 0 14 chr5 65872563 65872711 -86664548 - B1_Mus1 SINE Alu -2 146 1 1 1087 330 148 0 0 chr5 65872711 65872720 -86664539 + (T)n Simple_repeat Simple_repeat 1 9 0 1 1087 720 200 0 0 chr5 65872720 65872850 -86664409 - B1_Mur4 SINE Alu 0 150 21 1 1087 267 358 41 16 chr5 65872754 65872876 -86664383 - B4 SINE B4 -88 204 80 1 1087 700 215 44 0 chr5 65872891 65873026 -86664233 + B1_Mur4 SINE Alu 5 145 -5 1 1087 1219 48 0 0 chr5 65873235 65873382 -86663877 + B1_Mus2 SINE Alu 1 147 0 1 1087 482 251 26 87 chr5 65873461 65873692 -86663567 - ID_B1 SINE B4 -7 217 1 1 1087 292 195 37 11 chr5 65873719 65873812 -86663447 + B1F1 SINE Alu 2 136 -13 1 1087 414 100 0 0 chr5 65873812 65873872 -86663387 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 1 1087 180 176 0 0 chr5 65873879 65873913 -86663346 + GA-rich Low_complexity Low_complexity 3 36 0 1 1087 522 282 40 17 chr5 65874355 65874528 -86662731 - MLT1A0 LTR MaLR -152 213 37 1 1087 454 237 35 0 chr5 65874666 65874780 -86662479 + RSINE1 SINE B4 12 129 -36 1 1087 797 184 7 0 chr5 65874846 65874993 -86662266 + B1_Mur4 SINE Alu 3 150 0 1 1087 508 283 96 7 chr5 65874997 65875143 -86662116 + B3A SINE B2 3 161 -37 1 1087 327 25 0 0 chr5 65875146 65875186 -86662073 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1087 283 211 92 0 chr5 65875302 65875378 -86661881 - MLT-int LTR MaLR -127 1608 1526 1 1087 259 283 175 35 chr5 65875500 65875643 -86661616 - MLT-int LTR MaLR -943 792 630 1 1087 1222 35 7 0 chr5 65875768 65875912 -86661347 - B1_Mus1 SINE Alu -1 147 3 1 1087 206 337 92 0 chr5 65876045 65876143 -86661116 + MIRc SINE MIR 97 203 -65 1 1087 243 0 0 0 chr5 65876570 65876597 -86660662 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1087 489 69 0 0 chr5 65876720 65876755 -86660504 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1087 1256 34 0 0 chr5 65876755 65876902 -86660357 - B1_Mus2 SINE Alu 0 147 1 1 1087 489 69 0 0 chr5 65876902 65876938 -86660321 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1087 480 174 82 0 chr5 65877011 65877109 -86660150 + B1_Mus2 SINE Alu 41 146 -1 1 1087 222 260 0 0 chr5 65877725 65877774 -86659485 + T-rich Low_complexity Low_complexity 25 73 0 1 1087 1047 78 28 0 chr5 65877774 65877915 -86659344 - B1_Mus1 SINE Alu 0 148 4 1 1087 222 260 0 0 chr5 65877915 65877938 -86659321 + T-rich Low_complexity Low_complexity 2 24 0 1 1087 658 206 15 31 chr5 65877941 65878071 -86659188 - B1_Mur1 SINE Alu -21 128 1 1 1087 274 283 33 117 chr5 65877970 65878090 -86659169 - MT2B LTR ERVL -345 256 147 1 1087 1280 161 0 5 chr5 65878381 65878593 -86658666 + B3 SINE B2 5 215 -1 1 1087 250 289 144 0 chr5 65879109 65879206 -86658053 - PB1 SINE Alu 0 127 17 1 1087 198 0 0 0 chr5 65879266 65879288 -86657971 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1087 1159 68 7 0 chr5 65879288 65879434 -86657825 - B1_Mus1 SINE Alu 0 148 2 1 1087 652 227 157 0 chr5 65879507 65879692 -86657567 + B3 SINE B2 2 215 -1 1 1087 220 271 33 17 chr5 65879993 65880053 -86657206 - MER5A DNA MER1_type -6 183 123 1 1087 328 234 25 108 chr5 65880053 65880173 -86657086 + PB1D10 SINE Alu 1 110 -7 1 1087 288 208 25 38 chr5 65880276 65880356 -86656903 + ID4_ SINE ID 2 80 -3 1 1087 214 378 34 0 chr5 65880689 65880808 -86656451 - L2b LINE L2 -227 3148 3026 1 1087 340 207 0 35 chr5 65880919 65881004 -86656255 - B1_Mur3 SINE Alu -66 83 2 1 1087 534 16 0 0 chr5 65881043 65881106 -86656153 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1087 351 0 0 0 chr5 65881106 65881144 -86656115 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1087 722 223 30 80 chr5 65881361 65881561 -86655698 + B3A SINE B2 3 192 -6 1 1087 294 29 0 0 chr5 65882204 65882239 -86655020 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 1087 782 214 88 5 chr5 65882272 65882465 -86654794 + B3 SINE B2 8 216 0 1 1087 336 160 68 13 chr5 65884678 65884769 -86652490 + B1_Mur3 SINE Alu 1 133 -16 1 1087 678 179 43 7 chr5 65885540 65885681 -86651578 + B1_Mus1 SINE Alu 3 148 0 1 1087 974 53 0 8 chr5 65885692 65885825 -86651434 + B1_Mus1 SINE Alu 7 138 -10 1 1087 783 161 209 17 chr5 65886036 65886213 -86651046 - B3 SINE B2 -1 215 5 1 1087 705 199 21 0 chr5 65886268 65886409 -86650850 - B1_Mus2 SINE Alu -1 146 3 1 1087 2448 159 116 91 chr5 65886768 65887364 -86649895 + RLTR18 LTR ERVK 3 613 -3 1 1087 534 171 188 0 chr5 65887389 65887506 -86649753 - B1_Mur4 SINE Alu -10 140 2 1 1087 1083 69 14 20 chr5 65887809 65887957 -86649302 + B1_Mus1 SINE Alu 2 148 0 1 1087 207 100 0 0 chr5 65887957 65887987 -86649272 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1087 293 299 108 23 chr5 65888091 65888221 -86649038 + MLT1F1 LTR MaLR 140 280 -289 1 1087 246 294 9 29 chr5 65888233 65888338 -86648921 + PB1D10 SINE Alu 1 103 -14 1 1087 211 254 55 0 chr5 65888380 65888435 -86648824 + ID4_ SINE ID 3 60 -23 1 1087 376 136 0 0 chr5 65888449 65888508 -86648751 - B1_Mus2 SINE Alu 0 147 89 1 1087 568 275 24 63 chr5 65888867 65889073 -86648186 - B3A SINE B2 0 198 1 1 1087 1425 55 27 6 chr5 65889114 65889297 -86647962 + B2_Mm2 SINE B2 2 188 -7 1 1087 511 285 43 0 chr5 65889319 65889470 -86647789 - B3A SINE B2 -26 172 15 1 1087 243 0 0 0 chr5 65889511 65889538 -86647721 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1087 1083 73 0 0 chr5 65889538 65889675 -86647584 - B1_Mm SINE Alu -9 138 2 1 1087 271 254 14 32 chr5 65889780 65889884 -86647375 + PB1D10 SINE Alu 6 105 -15 1 1087 1189 80 0 0 chr5 65890025 65890188 -86647071 - B2_Mm2 SINE B2 -31 164 2 1 1087 791 170 50 0 chr5 65890220 65890361 -86646898 + B1_Mur3 SINE Alu 1 148 -1 1 1087 330 262 73 18 chr5 65890723 65890832 -86646427 - PB1D9 SINE Alu -1 119 5 1 1087 360 277 25 25 chr5 65890907 65891029 -86646230 - MLT1B LTR MaLR -68 322 201 1 1087 1164 252 40 132 chr5 65891062 65891747 -86645512 - RMER19C LTR ERVK -27 710 18 1 1087 1138 95 0 0 chr5 65891750 65891898 -86645361 + B1_Mus1 SINE Alu 1 148 0 1 1087 701 254 14 0 chr5 65892001 65892143 -86645116 + B1_Mur2 SINE Alu 3 146 -3 1 1087 439 217 11 11 chr5 65892177 65892270 -86644989 + B1_Mur2 SINE Alu 1 93 -56 1 1087 663 225 54 79 chr5 65892389 65892592 -86644667 - B3A SINE B2 0 198 1 1 1087 345 220 0 0 chr5 65892959 65893068 -86644191 + (CA)n Simple_repeat Simple_repeat 1 109 0 1 1087 208 239 15 15 chr5 65893271 65893339 -86643920 + (CATA)n Simple_repeat Simple_repeat 3 70 0 1 1087 920 125 35 0 chr5 65893362 65893506 -86643753 - B1_Mur4 SINE Alu 0 150 2 1 1087 976 125 102 45 chr5 65893702 65893878 -86643381 + B2_Mm2 SINE B2 4 189 -6 1 1087 189 121 0 0 chr5 65893886 65893919 -86643340 + (TATG)n Simple_repeat Simple_repeat 3 35 0 1 1087 1316 89 39 0 chr5 65894122 65894302 -86642957 - B2_Mm2 SINE B2 -8 187 1 1 1087 226 327 109 50 chr5 65894390 65894509 -86642750 + B4 SINE B4 73 198 -94 1 1087 553 205 80 0 chr5 65894420 65894532 -86642727 + B1_Mur1 SINE Alu 12 132 -17 1 1087 417 328 58 14 chr5 65894554 65894693 -86642566 + ID_B1 SINE B4 78 222 -2 1 1087 1556 255 33 50 chr5 65894788 65895112 -86642147 - Lx6 LINE L1 -12 7448 7130 1 1087 459 0 0 0 chr5 65895112 65895163 -86642096 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1087 1556 255 33 50 chr5 65895163 65895296 -86641963 - Lx6 LINE L1 -331 7129 6999 1 1087 379 244 13 0 chr5 65895465 65895543 -86641716 + ID4_ SINE ID 4 82 -1 1 1087 346 72 28 28 chr5 65895543 65895614 -86641645 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 1 1087 337 336 8 33 chr5 65896310 65896430 -86640829 - PB1D10 SINE Alu 0 117 1 1 1087 321 227 44 0 chr5 65896541 65896623 -86640636 + B1_Mus2 SINE Alu 45 138 -11 1 1087 392 158 13 0 chr5 65897437 65897513 -86639746 + GA-rich Low_complexity Low_complexity 2 78 0 1 1087 1121 68 0 20 chr5 65897516 65897666 -86639593 + B1_Mus2 SINE Alu 1 147 0 1 1087 350 154 0 0 chr5 65897713 65897778 -86639481 - B3 SINE B2 -104 112 48 1 1087 1405 73 17 0 chr5 65897882 65898059 -86639200 - B2_Mm2 SINE B2 -13 182 3 1 1087 252 296 0 24 chr5 65898562 65898645 -86638614 + MTEb LTR MaLR 278 358 -21 1 1087 918 224 54 0 chr5 65898738 65898943 -86638316 + B3 SINE B2 1 216 0 1 1087 785 184 0 0 chr5 65899094 65899230 -86638029 + B1_Mur3 SINE Alu 5 140 -9 1 1087 1134 112 0 11 chr5 65899230 65899512 -86637747 + (GAAA)n Simple_repeat Simple_repeat 1 278 0 1 1087 539 296 14 14 chr5 65899992 65900139 -86637120 + B1F2 SINE Alu 3 149 0 1 1087 514 158 23 13 chr5 65900196 65900314 -86636945 + B1_Mur4 SINE Alu 1 119 -1 1 1087 792 178 154 16 chr5 65900373 65900561 -86636698 + B3 SINE B2 2 215 -1 1 1087 790 199 7 0 chr5 65900567 65900713 -86636546 - B1_Mus1 SINE Alu -1 147 1 1 1087 23 0 0 0 chr5 65900718 65900741 -86636518 + AT_rich Low_complexity Low_complexity 1 23 0 1 1087 1000 261 29 25 chr5 65900853 65901127 -86636132 - B4A SINE B4 -4 288 14 1 1087 1796 117 70 98 chr5 65901127 65901526 -86635733 + RMER6A LTR ERVK 1 388 -368 1 1087 262 254 113 0 chr5 65901529 65901600 -86635659 - B3 SINE B2 -42 174 96 1 1087 679 122 104 16 chr5 65901611 65901736 -86635523 + B1_Mur4 SINE Alu 9 144 -6 1 1087 491 29 29 0 chr5 65902336 65902404 -86634855 + (CAGAGA)n Simple_repeat Simple_repeat 2 71 0 1 1087 595 230 37 7 chr5 65902404 65902540 -86634719 - RSINE1 SINE B4 -22 143 4 1 1087 428 260 0 10 chr5 65903137 65903238 -86634021 + PB1D10 SINE Alu 18 117 0 1 1087 1242 111 31 11 chr5 65903240 65903431 -86633828 + B2_Mm2 SINE B2 1 195 0 1 1087 198 0 0 0 chr5 65903485 65903507 -86633752 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 1 1087 994 148 122 0 chr5 65903529 65903718 -86633541 + MTD LTR MaLR 196 407 -12 1 1087 368 226 11 35 chr5 65903717 65903804 -86633455 + B4A SINE B4 190 274 -18 1 1087 348 242 1 119 chr5 65903904 65904017 -86633242 + B1F2 SINE Alu 8 115 -12 1 1087 1175 75 0 0 chr5 65904017 65904164 -86633095 + B1_Mm SINE Alu 1 147 0 1 1087 546 194 28 0 chr5 65904283 65904391 -86632868 - PB1D9 SINE Alu -1 119 9 1 1087 332 202 23 81 chr5 65904316 65904402 -86632857 - MT2B LTR ERVL -361 240 160 1 1087 21 36 0 0 chr5 65904409 65904437 -86632822 + AT_rich Low_complexity Low_complexity 1 28 0 1 1087 538 250 140 11 chr5 65904459 65904637 -86632622 - B3 SINE B2 0 216 16 1 1087 230 97 0 0 chr5 65904637 65904668 -86632591 + B1_Mus1 SINE Alu 14 44 -104 1 1087 483 18 0 0 chr5 65904697 65904753 -86632506 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1087 354 237 92 0 chr5 65904753 65904829 -86632430 - B3 SINE B2 -15 201 119 1 1087 623 210 49 28 chr5 65905256 65905398 -86631861 + B1_Mur1 SINE Alu 1 145 -4 1 1087 21 36 0 0 chr5 65905818 65905846 -86631413 + AT_rich Low_complexity Low_complexity 1 28 0 1 1087 513 0 0 0 chr5 65906456 65906513 -86630746 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1087 198 0 0 0 chr5 65906513 65906534 -86630725 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 1087 263 237 34 0 chr5 65906561 65906620 -86630639 + B3A SINE B2 2 62 -136 1 1087 355 310 95 40 chr5 65906739 65906887 -86630372 + RSINE1 SINE B4 3 158 -7 1 1087 324 267 152 0 chr5 65906941 65907046 -86630213 + ID_B1 SINE B4 90 210 -14 1 1087 246 282 41 91 chr5 65907046 65907062 -86630197 + PB1 SINE Alu 9 123 -4 1 1087 1453 78 5 5 chr5 65907559 65907751 -86629508 + B2_Mm2 SINE B2 2 193 -2 1 1087 766 274 99 60 chr5 65907989 65908354 -86628905 + MTEb LTR MaLR 1 379 0 1 1087 882 255 108 31 chr5 65908354 65908678 -86628581 + MTEb-int LTR MaLR 1 349 -1231 1 1087 664 223 10 96 chr5 65908933 65909141 -86628118 - B3 SINE B2 0 216 27 1 1087 286 210 36 24 chr5 65909167 65909250 -86628009 + L1M2 LINE L1 4242 4325 -1818 1 1087 1153 62 0 0 chr5 65909254 65909398 -86627861 + B1_Mus1 SINE Alu 3 146 -2 1 1087 1549 23 23 0 chr5 65909402 65909577 -86627682 + B2_Mm1t SINE B2 2 180 -13 1 1087 195 42 0 0 chr5 65909577 65909601 -86627658 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1087 342 234 0 49 chr5 65909844 65909915 -86627344 + RSINE1 SINE B4 60 128 -37 1 1087 564 15 0 0 chr5 65909915 65909980 -86627279 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1087 187 29 0 79 chr5 65909993 65910031 -86627228 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1087 877 76 7 44 chr5 65910047 65910184 -86627075 + B2_Mm2 SINE B2 24 155 -40 1 1087 286 22 0 61 chr5 65910184 65910233 -86627026 + (TAAAA)n Simple_repeat Simple_repeat 5 50 0 1 1087 425 176 0 0 chr5 65910235 65910303 -86626956 + ID4_ SINE ID 1 68 -15 1 1087 589 152 0 62 chr5 65910312 65910424 -86626835 + PB1D9 SINE Alu 14 118 -2 1 1087 855 153 7 40 chr5 65910643 65910793 -86626466 + B1_Mus2 SINE Alu 3 147 0 1 1087 432 0 0 0 chr5 65910857 65910905 -86626354 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1087 233 304 0 0 chr5 65910944 65911000 -86626259 - RSINE1 SINE B4 -21 144 89 1 1087 776 72 11 0 chr5 65910989 65911099 -86626160 + B1_Mus1 SINE Alu 26 135 -13 1 1087 234 0 0 0 chr5 65911099 65911125 -86626134 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 1087 1401 195 82 34 chr5 65911173 65911550 -86625709 + RMER17C LTR ERVK 1 396 -14 1 1087 261 0 0 0 chr5 65911550 65911579 -86625680 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1087 566 183 135 15 chr5 65911703 65911836 -86625423 - B1_Mur3 SINE Alu 0 149 1 1 1087 890 251 6 6 chr5 65911845 65912021 -86625238 + Lx8 LINE L1 6191 6366 -1107 1 1087 457 169 0 12 chr5 65912027 65912111 -86625148 - MTC LTR MaLR -10 411 329 1 1087 323 268 0 12 chr5 65912118 65912201 -86625058 + ID_B1 SINE B4 143 224 0 1 1087 663 236 0 26 chr5 65912205 65912357 -86624902 + B1_Mus1 SINE Alu 1 148 0 1 1087 1163 88 0 0 chr5 65912490 65912637 -86624622 - B1_Mus2 SINE Alu 0 147 1 1 1087 919 204 75 0 chr5 65913144 65913345 -86623914 - B3 SINE B2 0 216 1 1 1087 1170 46 0 0 chr5 65913473 65913625 -86623634 - MTB_Mm LTR MaLR 0 407 256 1 1087 1061 43 7 0 chr5 65913684 65913823 -86623436 - B1_Mus1 SINE Alu 0 148 9 1 1087 1158 47 23 34 chr5 65913825 65914002 -86623257 - MTB_Mm LTR MaLR -230 177 3 1 1087 803 165 233 12 chr5 65914120 65914292 -86622967 + B3 SINE B2 2 211 -5 1 1087 239 292 97 0 chr5 65914432 65914504 -86622755 + ID4_ SINE ID 1 79 -4 1 1087 21 0 0 0 chr5 65914504 65914525 -86622734 + AT_rich Low_complexity Low_complexity 1 21 0 1 1087 604 179 202 8 chr5 65914534 65914658 -86622601 + B1_Mur4 SINE Alu 2 149 -1 1 1087 1633 42 0 0 chr5 65914690 65914881 -86622378 - B2_Mm1t SINE B2 -1 192 2 1 1087 909 83 15 0 chr5 65915111 65915244 -86622015 + B1_Mus1 SINE Alu 14 148 0 1 1087 266 82 41 0 chr5 65915244 65915293 -86621966 + (CAAAA)n Simple_repeat Simple_repeat 1 51 0 1 1087 354 149 29 2 chr5 65915363 65915431 -86621828 + B1_Mur1 SINE Alu 75 142 -7 1 1087 1141 70 0 0 chr5 65915459 65915617 -86621642 + B2_Mm1a SINE B2 1 158 -35 1 1087 180 0 0 0 chr5 65915619 65915639 -86621620 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 1 1087 615 272 80 80 chr5 65916024 65916360 -86620899 + ORR1E LTR MaLR 1 336 -23 1 1087 765 211 160 18 chr5 65916729 65917183 -86620076 - RMER5 LTR ERV1 -4 530 13 1 1087 676 183 53 8 chr5 65917438 65917570 -86619689 - B1_Mur1 SINE Alu -11 138 1 1 1087 721 226 20 0 chr5 65917763 65917909 -86619350 + B1_Mur1 SINE Alu 1 149 0 1 1087 1211 35 7 0 chr5 65918327 65918472 -86618787 + B1_Mus2 SINE Alu 2 147 0 1 1087 1183 237 102 15 chr5 65919108 65919450 -86617809 - MTEb LTR MaLR -5 374 3 1 1087 423 0 0 0 chr5 65919462 65919509 -86617750 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1087 628 220 8 0 chr5 65919509 65919627 -86617632 - B1_Mur1 SINE Alu -12 137 19 1 1087 717 274 38 24 chr5 65919658 65919871 -86617388 - B3 SINE B2 0 216 1 1 1087 243 254 59 15 chr5 65919895 65919963 -86617296 - B3A SINE B2 -23 175 105 1 1087 1151 68 0 0 chr5 65920315 65920461 -86616798 + B1_Mus2 SINE Alu 2 147 0 1 1087 330 213 13 0 chr5 65920603 65920678 -86616581 + RMER15 LTR ERVL 422 497 -78 1 1087 406 146 60 80 chr5 65920694 65920895 -86616364 - RMER17C LTR ERVK -134 276 80 1 1087 391 329 0 83 chr5 65921725 65921881 -86615378 - LTR33 LTR ERVL -355 160 18 1 1087 416 60 0 29 chr5 65922021 65922090 -86615169 + (TCTCTG)n Simple_repeat Simple_repeat 3 69 0 1 1087 418 212 24 0 chr5 65922277 65922362 -86614897 - B1_Mur2 SINE Alu -56 93 7 1 1087 214 312 16 0 chr5 65922308 65922372 -86614887 - B4A SINE B4 -146 146 82 1 1087 513 150 11 214 chr5 65922395 65922582 -86614677 - B1_Mur3 SINE Alu 0 149 1 1 1087 301 272 19 19 chr5 65922637 65922742 -86614517 - Charlie1a DNA MER1_type -644 811 707 1 1087 330 26 0 0 chr5 65922767 65922806 -86614453 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1087 22 56 0 0 chr5 65922896 65922932 -86614327 + AT_rich Low_complexity Low_complexity 1 36 0 1 1087 22 0 0 0 chr5 65922957 65922979 -86614280 + AT_rich Low_complexity Low_complexity 1 22 0 1 1087 1095 28 7 0 chr5 65922988 65923130 -86614129 - B1_Mus1 SINE Alu 0 148 6 1 1087 786 216 13 78 chr5 65923130 65923219 -86614040 - ID_B1 SINE B4 -1 223 8 1 1087 451 239 65 7 chr5 65923227 65923366 -86613893 - Charlie1a DNA MER1_type -891 564 418 1 1087 439 237 46 12 chr5 65923404 65923521 -86613738 + PB1D7 SINE Alu 3 120 0 1 1087 365 261 47 68 chr5 65923570 65923718 -86613541 - RSINE1 SINE B4 0 165 21 1 1087 3331 133 209 2 chr5 65923888 65924497 -86612762 + RMER19A LTR ERVK 1 735 -2 1 1087 237 246 188 0 chr5 65925145 65925214 -86612045 + RSINE1 SINE B4 39 120 -45 1 1087 26 0 0 0 chr5 65925216 65925242 -86612017 + AT_rich Low_complexity Low_complexity 1 26 0 1 1087 648 148 8 45 chr5 65925284 65925418 -86611841 + B1_Mur4 SINE Alu 22 150 0 1 1087 479 200 96 0 chr5 65925478 65925593 -86611666 + B1_Mur1 SINE Alu 24 149 0 1 1087 320 271 126 0 chr5 65926132 65926283 -86610976 - L1MD3 LINE L1 -36 7959 7790 1 1087 276 347 0 0 chr5 65926379 65926474 -86610785 + PB1D10 SINE Alu 2 96 -21 1 1087 232 259 17 0 chr5 65926522 65926580 -86610679 + tRNA-Ala-GCY_ tRNA tRNA 8 66 -9 1 1087 1183 102 46 41 chr5 65926882 65927076 -86610183 + B2_Mm2 SINE B2 1 195 0 1 1087 326 186 71 0 chr5 65927139 65927209 -86610050 - B1F2 SINE Alu -74 75 1 1 1087 1171 48 7 0 chr5 65927332 65927477 -86609782 - B1_Mus2 SINE Alu 0 147 2 1 1087 296 221 97 80 chr5 65927763 65927876 -86609383 + MER5A DNA MER1_type 50 187 -2 1 1087 189 0 0 0 chr5 65928419 65928440 -86608819 + (CGCGG)n Simple_repeat Simple_repeat 1 21 0 1 1087 286 250 0 0 chr5 65928629 65928697 -86608562 + (CGG)n Simple_repeat Simple_repeat 2 69 0 1 1088 281 233 108 14 chr5 65930684 65930758 -86606501 + RSINE1 SINE B4 3 83 -82 1 1088 216 111 0 0 chr5 65931271 65931307 -86605952 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1088 300 188 79 45 chr5 65931352 65931441 -86605818 + PB1D9 SINE Alu 23 114 -6 1 1088 378 0 0 0 chr5 65931533 65931575 -86605684 + (TGG)n Simple_repeat Simple_repeat 2 43 0 1 1088 180 77 0 0 chr5 65932191 65932217 -86605042 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1088 835 83 0 0 chr5 65932252 65932373 -86604886 - B1_Mus2 SINE Alu 0 147 27 1 1088 590 215 52 7 chr5 65932371 65932507 -86604752 - B1_Mur4 SINE Alu -8 142 1 1 1088 211 200 44 0 chr5 65932540 65932585 -86604674 - MIRm SINE MIR -127 149 103 1 1088 1390 73 51 0 chr5 65932612 65932789 -86604470 - B2_Mm2 SINE B2 -8 187 2 1 1088 985 59 0 0 chr5 65932838 65932974 -86604285 - B1_Mm SINE Alu -1 146 11 1 1088 852 181 14 0 chr5 65933179 65933323 -86603936 - B1_Mur4 SINE Alu 0 150 5 1 1088 1509 59 0 5 chr5 65933478 65933666 -86603593 - B2_Mm2 SINE B2 -6 189 3 1 1088 294 192 0 99 chr5 65934235 65934316 -86602943 - B1_Mur1 SINE Alu 0 149 77 1 1088 515 191 120 15 chr5 65934323 65934456 -86602803 - B1_Mur2 SINE Alu -2 147 1 1 1088 643 203 27 27 chr5 65934784 65934931 -86602328 + B1_Mur2 SINE Alu 3 149 0 1 1088 647 163 46 15 chr5 65934960 65935081 -86602178 + B1_Mur4 SINE Alu 9 135 -15 1 1088 225 0 0 0 chr5 65935081 65935106 -86602153 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1088 402 275 45 27 chr5 65935139 65935251 -86602008 + PB1D10 SINE Alu 3 116 -1 1 1088 30 0 0 0 chr5 65935306 65935336 -86601923 + AT_rich Low_complexity Low_complexity 1 30 0 1 1088 1661 26 5 0 chr5 65935607 65935796 -86601463 + B2_Mm1t SINE B2 1 190 -3 1 1088 28 0 0 0 chr5 65936228 65936256 -86601003 + AT_rich Low_complexity Low_complexity 1 28 0 1 1088 538 180 142 45 chr5 65936256 65936390 -86600869 - B1_Mus1 SINE Alu 0 148 2 1 1088 225 0 0 0 chr5 65936506 65936531 -86600728 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1088 636 267 129 30 chr5 65936730 65936993 -86600266 - L1MB3 LINE L1 -24 6159 5871 1 1088 723 265 68 30 chr5 65937021 65937241 -86600018 + B4A SINE B4 2 230 -62 1 1088 580 248 63 14 chr5 65937241 65937384 -86599875 + RSINE1 SINE B4 2 151 -14 1 1088 568 248 63 14 chr5 65937449 65937592 -86599667 + RSINE1 SINE B4 2 151 -14 1 1088 289 192 36 71 chr5 65937732 65937816 -86599443 + B3A SINE B2 83 163 -35 1 1088 574 217 116 0 chr5 65937845 65937974 -86599285 + B1_Mur1 SINE Alu 3 146 -3 1 1088 1506 63 5 0 chr5 65938097 65938286 -86598973 - B2_Mm1a SINE B2 -3 190 1 1 1088 292 253 53 0 chr5 65938412 65938487 -86598772 - RSINE1 SINE B4 -11 154 76 1 1088 932 93 103 18 chr5 65938541 65938679 -86598580 + B2_Mm2 SINE B2 1 153 -42 1 1088 200 35 35 0 chr5 65938679 65938708 -86598551 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 1 1088 932 93 103 18 chr5 65938708 65938734 -86598525 + B2_Mm2 SINE B2 154 179 -16 1 1088 277 326 61 0 chr5 65938761 65938859 -86598400 - RSINE1 SINE B4 -42 123 20 1 1088 510 145 154 46 chr5 65938879 65939009 -86598250 - B1_Mur1 SINE Alu -1 148 5 1 1088 1250 55 28 6 chr5 65939265 65939292 -86597967 - B2_Mm1a SINE B2 -1 192 161 1 1088 243 0 0 0 chr5 65939292 65939319 -86597940 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1088 1250 55 28 6 chr5 65939319 65939473 -86597786 - B2_Mm1a SINE B2 -33 160 7 1 1088 43 20 0 0 chr5 65939647 65939697 -86597562 + AT_rich Low_complexity Low_complexity 1 50 0 1 1088 498 314 23 46 chr5 65939876 65940093 -86597166 - ID_B1 SINE B4 -11 213 2 1 1088 211 28 56 0 chr5 65940106 65940142 -86597117 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1 1088 706 148 42 49 chr5 65940163 65940305 -86596954 - B1_Mur4 SINE Alu 0 150 10 1 1088 855 227 40 6 chr5 65940327 65940500 -86596759 - B3 SINE B2 -37 179 1 1 1088 471 133 83 37 chr5 65941123 65941232 -86596027 + B1_Mus2 SINE Alu 33 146 -1 1 1088 622 174 90 8 chr5 65942008 65942141 -86595118 - B1_Mur2 SINE Alu -5 144 1 1 1088 200 273 181 29 chr5 65942410 65942614 -86594645 - L2 LINE L2 -1367 2052 1818 1 1088 188 253 105 13 chr5 65942822 65942898 -86594361 - L2 LINE L2 -2054 1365 1283 1 1088 389 107 313 26 chr5 65943278 65943393 -86593866 - B2_Mm2 SINE B2 -1 194 47 1 1088 1399 73 11 0 chr5 65943444 65943621 -86593638 - B2_Mm1t SINE B2 -14 179 1 1 1088 847 262 5 53 chr5 65943687 65943893 -86593366 + B3 SINE B2 4 199 -17 1 1088 919 129 152 49 chr5 65943979 65944183 -86593076 - URR1A DNA MER1_type 0 226 2 1 1088 1481 22 43 5 chr5 65944513 65944698 -86592561 - B2_Mm1a SINE B2 0 193 2 1 1088 1175 57 0 0 chr5 65944709 65944849 -86592410 - B1_Mus1 SINE Alu -8 140 1 1 1088 1905 133 76 57 chr5 65945131 65945498 -86591761 - ORR1C1 LTR MaLR 0 378 5 1 1088 810 255 29 24 chr5 65945552 65945761 -86591498 + B3 SINE B2 1 210 -6 1 1088 1287 96 37 0 chr5 65945765 65945952 -86591307 - B2_Mm2 SINE B2 0 195 2 1 1088 245 273 80 10 chr5 65946059 65946159 -86591100 - L1MCa LINE L1 -5984 524 418 1 1088 1222 48 0 0 chr5 65946188 65946335 -86590924 - B1_Mm SINE Alu 0 147 1 1 1088 344 268 254 35 chr5 65946397 65946598 -86590661 - L1MCa LINE L1 -6195 313 69 1 1088 216 0 0 0 chr5 65946791 65946815 -86590444 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1088 635 338 3 28 chr5 65946820 65947043 -86590216 - B4 SINE B4 -20 272 58 1 1088 489 241 34 17 chr5 65947029 65947147 -86590112 - B3 SINE B2 -96 120 1 1 1088 291 267 153 70 chr5 65947141 65947157 -86590102 - B4 SINE B4 -56 236 184 1 1088 613 133 28 37 chr5 65947157 65947266 -86589993 - PB1D9 SINE Alu -1 119 12 1 1088 291 267 153 70 chr5 65947266 65947298 -86589961 - B4 SINE B4 -56 183 67 1 1088 698 184 149 30 chr5 65947328 65947496 -86589763 - B3 SINE B2 0 216 29 1 1088 1464 73 0 5 chr5 65947658 65947850 -86589409 - B2_Mm2 SINE B2 -4 191 1 1 1088 309 262 9 28 chr5 65947895 65948001 -86589258 - L1MC LINE L1 -1540 4606 4503 1 1088 542 306 36 131 chr5 65948059 65948364 -86588895 - B4A SINE B4 0 292 17 1 1088 486 202 154 0 chr5 65948425 65948529 -86588730 + B1_Mur2 SINE Alu 5 124 -25 1 1088 508 131 36 0 chr5 65948616 65948700 -86588559 - URR1B DNA MER1_type 0 225 139 1 1088 353 209 24 62 chr5 65948977 65949075 -86588184 - B1_Mur3 SINE Alu 0 149 24 1 1088 1727 43 59 13 chr5 65949111 65949347 -86587912 + L1Md_F2 LINE L1 6336 6582 0 1 1088 1045 69 21 0 chr5 65949382 65949527 -86587732 + B1_Mus1 SINE Alu 1 148 0 1 1088 228 67 0 0 chr5 65949527 65949557 -86587702 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1088 210 171 0 0 chr5 65949625 65949666 -86587593 + T-rich Low_complexity Low_complexity 1 41 0 1 1088 482 198 126 25 chr5 65949669 65949788 -86587471 - B1_Mus2 SINE Alu -1 146 16 1 1088 559 217 8 80 chr5 65949800 65949925 -86587334 - B1_Mur4 SINE Alu -1 149 34 1 1088 600 138 214 8 chr5 65949934 65950051 -86587208 - B1_Mus1 SINE Alu -7 141 1 1 1088 604 236 63 79 chr5 65950165 65950354 -86586905 + ID_B1 SINE B4 18 203 -21 1 1088 222 333 11 65 chr5 65950580 65950673 -86586586 - RSINE1 SINE B4 -7 158 71 1 1088 288 144 316 26 chr5 65950719 65950833 -86586426 - B1_Mur1 SINE Alu 0 149 3 1 1088 1297 84 16 21 chr5 65950907 65951101 -86586158 - B2_Mm2 SINE B2 -2 193 1 1 1088 238 269 29 15 chr5 65951177 65951245 -86586014 + BC1_Mm scRNA scRNA 1 69 -83 1 1088 986 108 0 0 chr5 65951803 65951942 -86585317 - B1_Mus1 SINE Alu -9 139 1 1 1088 363 306 0 39 chr5 65951944 65952046 -86585213 - B1F SINE Alu -51 98 1 1 1088 2906 149 58 78 chr5 65952452 65953107 -86584152 - RLTR26 LTR ERVK 0 642 1 1 1088 409 228 13 0 chr5 65953197 65953276 -86583983 + B3 SINE B2 125 204 -12 1 1088 533 318 28 40 chr5 65953295 65953472 -86583787 + ID_B1 SINE B4 2 176 -48 1 1088 406 270 0 20 chr5 65953383 65953485 -86583774 + B1_Mur2 SINE Alu 10 109 -40 1 1088 255 308 158 43 chr5 65953695 65953711 -86583548 - RSINE1 SINE B4 -9 156 142 1 1088 456 67 0 0 chr5 65953711 65953771 -86583488 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1088 255 308 158 43 chr5 65953771 65953893 -86583366 - RSINE1 SINE B4 -24 141 2 1 1088 544 205 62 0 chr5 65953920 65954032 -86583227 - ID_B1 SINE B4 -1 223 105 1 1088 431 165 155 58 chr5 65954264 65954367 -86582892 - B1_Mur2 SINE Alu -34 115 3 1 1088 24 77 0 0 chr5 65955081 65955133 -86582126 + AT_rich Low_complexity Low_complexity 1 52 0 1 1088 1089 55 21 0 chr5 65955926 65956071 -86581188 - B1_Mus1 SINE Alu 0 148 1 1 1088 24 67 0 0 chr5 65957131 65957176 -86580083 + AT_rich Low_complexity Low_complexity 1 45 0 1 1088 311 281 198 12 chr5 65958148 65958310 -86578949 - MIRb SINE MIR -51 217 26 1 1088 500 237 16 25 chr5 65958499 65958620 -86578639 - PB1D7 SINE Alu 0 120 1 1 1088 238 312 26 9 chr5 65958663 65958776 -86578483 - ID_B1 SINE B4 -9 215 101 1 1088 1171 48 155 0 chr5 65958878 65959046 -86578213 - B2_Mm2 SINE B2 -1 194 1 1 1088 397 250 109 0 chr5 65959148 65959240 -86578019 + B1F SINE Alu 3 104 -45 1 1088 490 277 9 26 chr5 65959327 65959442 -86577817 + PB1 SINE Alu 15 127 0 1 1088 3150 39 2 20 chr5 65959491 65959887 -86577372 - L1Md_F2 LINE L1 -2 6580 6192 1 1088 1147 62 14 0 chr5 65959906 65960051 -86577208 - B1_Mus1 SINE Alu 0 148 2 1 1088 23 33 0 0 chr5 65960421 65960451 -86576808 + AT_rich Low_complexity Low_complexity 1 30 0 1 1088 189 0 0 0 chr5 65960596 65960617 -86576642 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1088 1679 26 0 0 chr5 65960621 65960813 -86576446 - B2_Mm1t SINE B2 0 193 2 1 1088 1064 75 13 27 chr5 65960939 65961089 -86576170 - B1_Mus1 SINE Alu 0 148 1 1 1088 367 284 52 21 chr5 65961227 65961324 -86575935 + PB1D7 SINE Alu 5 104 -16 1 1088 353 66 246 0 chr5 65962204 65962265 -86574994 - BC1_Mm scRNA scRNA -76 76 1 1 1088 1129 82 0 7 chr5 65962356 65962503 -86574756 - B1_Mus2 SINE Alu -1 146 1 1 1088 21 0 0 0 chr5 65962605 65962626 -86574633 + AT_rich Low_complexity Low_complexity 1 21 0 1 1088 377 148 91 0 chr5 65962979 65963067 -86574192 - Lx2 LINE L1 0 6997 6902 1 1088 32 43 0 0 chr5 65963264 65963310 -86573949 + AT_rich Low_complexity Low_complexity 1 46 0 1 1088 266 288 0 114 chr5 65963312 65963461 -86573798 + BC1_Mm scRNA scRNA 2 133 -19 1 1088 369 208 292 0 chr5 65963496 65963626 -86573633 - B2_Mm2 SINE B2 -27 168 1 1 1088 638 124 0 8 chr5 65964211 65964333 -86572926 + (TCCC)n Simple_repeat Simple_repeat 2 122 0 1 1088 295 270 0 0 chr5 65964335 65964398 -86572861 - B1_Mur2 SINE Alu -40 109 47 1 1088 1620 219 61 15 chr5 65964406 65964813 -86572446 - BGLII_B LTR ERVK -10 431 6 1 1088 326 374 41 18 chr5 65964853 65964889 -86572370 - B4 SINE B4 -35 257 87 1 1088 447 285 99 8 chr5 65964889 65965020 -86572239 - B1_Mur1 SINE Alu -5 144 2 1 1088 278 197 106 0 chr5 65965092 65965158 -86572101 - ID4 SINE ID -10 73 1 1 1088 310 236 81 0 chr5 65965158 65965281 -86571978 - L1MB3 LINE L1 -44 6139 6007 1 1088 788 75 9 0 chr5 65965372 65965479 -86571780 - B1_Mm SINE Alu 0 147 40 1 1088 3900 108 68 63 chr5 65965781 65966528 -86570731 + RMER6A LTR ERVK 1 751 -5 1 1088 488 261 36 0 chr5 65966535 65966646 -86570613 - PB1D9 SINE Alu 0 120 6 1 1088 371 269 0 41 chr5 65966654 65966751 -86570508 - PB1 SINE Alu -2 125 33 1 1088 219 180 0 20 chr5 65967019 65967070 -86570189 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1088 241 140 59 20 chr5 65967753 65967804 -86569455 + B3A SINE B2 3 55 -143 1 1088 864 176 7 7 chr5 65968299 65968448 -86568811 - B1_Mur4 SINE Alu 0 150 2 1 1088 364 263 0 0 chr5 65968506 65968582 -86568677 - B3 SINE B2 -54 162 87 1 1088 559 314 19 10 chr5 65968582 65968791 -86568468 + B3 SINE B2 1 211 -5 1 1088 306 312 0 0 chr5 65968846 65968923 -86568336 - B3 SINE B2 -135 81 5 1 1088 248 226 47 31 chr5 65969746 65969810 -86567449 - B1_Mus1 SINE Alu -83 65 1 1 1088 382 250 104 15 chr5 65969869 65970003 -86567256 - B1_Mur1 SINE Alu -2 147 2 1 1088 543 233 45 0 chr5 65970059 65970192 -86567067 - ID_B1 SINE B4 -1 223 85 1 1088 27 49 0 0 chr5 65970226 65970267 -86566992 + AT_rich Low_complexity Low_complexity 1 41 0 1 1088 612 234 20 41 chr5 65970729 65970876 -86566383 + B1_Mur1 SINE Alu 6 149 0 1 1088 483 248 38 0 chr5 65971019 65971124 -86566135 + B3A SINE B2 2 110 -88 1 1088 687 186 56 14 chr5 65971179 65971321 -86565938 + B1_Mus1 SINE Alu 1 148 0 1 1088 1121 58 0 0 chr5 65971460 65971598 -86565661 + B1_Mus2 SINE Alu 2 139 -8 1 1088 434 100 43 0 chr5 65971607 65971677 -86565582 - B1_Mus2 SINE Alu -73 74 2 1 1088 367 106 91 0 chr5 65971622 65971688 -86565571 - B4 SINE B4 -151 141 70 1 1088 445 252 42 25 chr5 65972151 65972269 -86564990 - B1_Mur1 SINE Alu -29 120 1 1 1088 201 143 0 0 chr5 65972542 65972577 -86564682 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1088 27 62 0 0 chr5 65972907 65972955 -86564304 + AT_rich Low_complexity Low_complexity 1 48 0 1 1088 349 242 79 97 chr5 65973169 65973334 -86563925 - RSINE1 SINE B4 -1 164 3 1 1088 906 92 69 0 chr5 65973505 65973636 -86563623 - B1_Mus1 SINE Alu -7 141 2 1 1088 294 346 28 9 chr5 65973882 65973990 -86563269 + PB1D7 SINE Alu 11 120 0 1 1088 329 0 24 0 chr5 65974493 65974534 -86562725 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1088 560 252 47 0 chr5 65974546 65974673 -86562586 - B1_Mur3 SINE Alu -16 133 1 1 1088 1238 109 11 11 chr5 65975131 65975316 -86561943 + B2_Mm2 SINE B2 2 186 -9 1 1088 225 240 0 20 chr5 65975489 65975559 -86561700 + (TCCG)n Simple_repeat Simple_repeat 1 68 0 1 1088 464 211 31 31 chr5 65975569 65975667 -86561592 - B1_Mur2 SINE Alu -51 98 1 1 1088 24 53 0 0 chr5 65975667 65975705 -86561554 + AT_rich Low_complexity Low_complexity 1 38 0 1 1088 833 63 0 26 chr5 65976017 65976131 -86561128 - B1_Mus2 SINE Alu 0 147 37 1 1088 456 287 18 60 chr5 65976131 65976182 -86561077 - ID_B1 SINE B4 0 222 65 1 1088 915 283 100 41 chr5 65976191 65976530 -86560729 - ORR1E LTR MaLR 0 359 1 1 1088 198 0 0 0 chr5 65976837 65976859 -86560400 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1088 988 88 13 33 chr5 65976859 65977012 -86560247 - B1_Mur4 SINE Alu 0 150 1 1 1088 1638 31 0 5 chr5 65977025 65977219 -86560040 - B2_Mm1a SINE B2 0 193 1 1 1088 870 160 0 20 chr5 65978020 65978173 -86559086 - B1_Mur4 SINE Alu 0 150 1 1 1088 912 204 45 6 chr5 65978218 65978395 -86558864 + B3 SINE B2 33 216 0 1 1088 320 133 0 16 chr5 65978464 65978525 -86558734 + (TCCC)n Simple_repeat Simple_repeat 2 61 0 1 1088 200 114 29 0 chr5 65978687 65978722 -86558537 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 1 1088 23 33 0 0 chr5 65978735 65978765 -86558494 + AT_rich Low_complexity Low_complexity 1 30 0 1 1088 392 307 59 20 chr5 65979132 65979285 -86557974 - B3 SINE B2 0 216 58 1 1088 793 154 14 14 chr5 65979285 65979423 -86557836 - B1_Mur2 SINE Alu -11 138 1 1 1088 25 51 0 0 chr5 65979450 65979489 -86557770 + AT_rich Low_complexity Low_complexity 1 39 0 1 1088 382 310 31 43 chr5 65979605 65979767 -86557492 - RSINE1 SINE B4 -4 161 2 1 1088 1230 48 0 0 chr5 65980132 65980279 -86556980 - B1_Mus2 SINE Alu 0 147 1 1 1088 308 294 130 0 chr5 65980505 65980597 -86556662 - PB1D10 SINE Alu -13 104 1 1 1088 21 0 0 0 chr5 65980633 65980654 -86556605 + AT_rich Low_complexity Low_complexity 1 21 0 1 1088 1471 53 5 16 chr5 65980764 65980955 -86556304 - B2_Mm1t SINE B2 -4 189 1 1 1088 261 301 57 28 chr5 65981000 65981106 -86556153 + PB1D9 SINE Alu 5 113 -7 1 1088 223 177 16 16 chr5 65981209 65981272 -86555987 + CT-rich Low_complexity Low_complexity 2 64 0 1 1088 1138 101 6 11 chr5 65981277 65981458 -86555801 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 1 1088 695 194 93 0 chr5 65981723 65981852 -86555407 - B1_Mur4 SINE Alu -5 145 5 1 1088 406 289 30 56 chr5 65981973 65982171 -86555088 - B3A SINE B2 -5 193 1 1 1088 1160 68 0 0 chr5 65982536 65982683 -86554576 + B1_Mus1 SINE Alu 1 147 -1 1 1088 351 260 233 27 chr5 65982704 65982854 -86554405 + B3 SINE B2 27 207 -9 1 1088 1165 90 38 38 chr5 65983366 65983550 -86553709 + B2_Mm2 SINE B2 3 186 -9 1 1088 585 254 14 18 chr5 65983842 65984023 -86553236 + B3 SINE B2 4 185 -10 1 1088 1298 109 0 10 chr5 65984025 65984220 -86553039 - B2_Mm2 SINE B2 -1 194 2 1 1088 21 0 0 0 chr5 65984361 65984382 -86552877 + AT_rich Low_complexity Low_complexity 1 21 0 1 1088 329 184 245 0 chr5 65984409 65984507 -86552752 - B3 SINE B2 -86 130 9 1 1088 332 326 21 92 chr5 65984601 65984743 -86552516 + B1_Mur1 SINE Alu 13 144 -5 1 1088 216 122 0 0 chr5 65988110 65988151 -86549108 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1088 381 318 139 0 chr5 65990739 65990868 -86546391 + B1_Mur1 SINE Alu 3 149 0 1 1088 874 103 73 7 chr5 65991365 65991502 -86545757 - B1_Mus2 SINE Alu 0 147 2 1 1088 550 235 102 21 chr5 65991502 65991552 -86545707 - ID_B1 SINE B4 0 224 23 1 1088 249 375 8 51 chr5 65991644 65991762 -86545497 + B4A SINE B4 45 157 -135 1 1088 348 284 29 19 chr5 65991702 65991809 -86545450 + PB1D7 SINE Alu 13 120 0 1 1088 320 300 132 28 chr5 65992621 65992643 -86544616 - B4 SINE B4 -43 249 91 1 1088 344 229 213 33 chr5 65992643 65992765 -86544494 - B1F2 SINE Alu 0 149 6 1 1088 245 209 209 0 chr5 65992899 65992966 -86544293 + B1_Mus2 SINE Alu 3 83 -64 1 1088 1091 70 28 0 chr5 65992984 65993127 -86544132 - B1_Mus2 SINE Alu 0 147 1 1 1088 345 273 91 0 chr5 65993376 65993464 -86543795 - B4 SINE B4 -188 104 9 1 1088 730 125 0 0 chr5 65994372 65994500 -86542759 - L1_Mm LINE L1 -3768 2115 1988 1 1088 766 11 0 0 chr5 65994500 65994589 -86542670 - MT2_Mm LTR ERVL 0 493 405 1 1088 7202 19 8 0 chr5 65994593 65995455 -86541804 - MT-int LTR MaLR -73 1025 157 1 1088 3796 16 0 0 chr5 65995457 65995906 -86541353 - MERVL-int LTR ERVL -1287 4198 3750 1 1088 233 277 121 50 chr5 65997042 65997203 -86540056 + ID_B1 SINE B4 40 214 -10 1 1088 436 342 62 6 chr5 65997785 65997947 -86539312 + ID_B1 SINE B4 48 218 -6 1 1088 684 231 139 0 chr5 65997969 65998142 -86539117 + B3 SINE B2 1 197 -19 1 1088 346 120 0 0 chr5 65998721 65998771 -86538488 + B1_Mur4 SINE Alu 2 51 -99 1 1088 209 204 0 0 chr5 66001704 66001753 -86535506 + A-rich Low_complexity Low_complexity 1 49 0 1 1088 235 304 129 9 chr5 66001909 66002025 -86535234 - ID_B1 SINE B4 -72 152 23 2 1088 346 262 24 0 chr5 66002349 66002433 -86534826 - B1_Mus1 SINE Alu -56 92 7 3 1088 322 186 0 0 chr5 66002450 66002509 -86534750 - PB1D10 SINE Alu 0 117 59 4 1088 296 261 119 15 chr5 66002869 66002985 -86534274 + B3A SINE B2 5 128 -70 5 1088 1090 125 22 33 chr5 66002996 66003178 -86534081 - B2_Mm2 SINE B2 -14 181 2 6 1088 248 213 0 26 chr5 66003257 66003285 -86533974 + A-rich Low_complexity Low_complexity 1 27 0 7 1088 1202 41 7 0 chr5 66003285 66003431 -86533828 + B1_Mus2 SINE Alu 1 147 0 8 1088 248 213 0 26 chr5 66003431 66003479 -86533780 + A-rich Low_complexity Low_complexity 28 75 0 9 1088 647 215 32 16 chr5 66003490 66003664 -86533595 + B3 SINE B2 17 198 0 1 1088 521 127 0 0 chr5 66003728 66003807 -86533452 + B2_Mm2 SINE B2 2 80 -115 1 1088 355 319 21 0 chr5 66003978 66004122 -86533137 + B1_Mur2 SINE Alu 1 147 -2 1 1088 701 117 67 0 chr5 66004398 66004518 -86532741 - URR1B DNA MER1_type 0 225 98 1 1088 281 320 0 13 chr5 66005149 66005225 -86532034 - ID SINE ID -149 75 1 1 1088 546 291 14 7 chr5 66005263 66005405 -86531854 + B1F SINE Alu 6 148 -1 1 1088 209 235 23 12 chr5 66005414 66005500 -86531759 + A-rich Low_complexity Low_complexity 2 88 0 1 1088 642 195 94 0 chr5 66005511 66005639 -86531620 + B1_Mm SINE Alu 1 140 -7 1 1088 207 133 0 0 chr5 66005645 66005690 -86531569 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 1 1088 395 191 13 0 chr5 66006066 66006155 -86531104 - L1MB3 LINE L1 -264 5904 5815 1 1088 416 262 39 0 chr5 66006221 66006324 -86530935 - PB1D10 SINE Alu -6 111 5 2 1088 402 328 15 7 chr5 66007977 66008112 -86529147 + B1F1 SINE Alu 13 148 -1 2 1088 298 285 70 1 chr5 66008469 66008582 -86528677 + B1F SINE Alu 3 121 -28 2 1088 347 333 67 0 chr5 66008772 66008907 -86528352 + B1F1 SINE Alu 1 144 -5 2 1088 545 240 24 0 chr5 66009376 66009501 -86527758 + B3 SINE B2 89 216 0 2 1088 385 269 65 4 chr5 66009535 66009686 -86527573 + B3 SINE B2 29 192 -24 2 1088 471 100 0 0 chr5 66009686 66009756 -86527503 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 2 1088 356 186 43 0 chr5 66010066 66010136 -86527123 - B3 SINE B2 -142 74 2 2 1088 284 266 51 41 chr5 66010458 66010556 -86526703 + PB1D10 SINE Alu 12 110 -7 2 1088 354 252 198 16 chr5 66010566 66010687 -86526572 + B1_Mur2 SINE Alu 1 143 -6 2 1088 596 50 0 12 chr5 66011009 66011090 -86526169 + (GAAAA)n Simple_repeat Simple_repeat 1 80 0 3 1088 426 181 257 0 chr5 66011455 66011560 -86525699 - B1_Mur4 SINE Alu -18 132 1 3 1088 583 214 76 8 chr5 66012085 66012217 -86525042 - B1_Mm SINE Alu -1 146 6 3 1088 271 230 27 13 chr5 66012226 66012301 -86524958 - B3 SINE B2 -2 214 139 3 1088 244 236 128 11 chr5 66012610 66012704 -86524555 + PB1D9 SINE Alu 9 113 -7 3 1088 282 244 291 0 chr5 66012891 66012977 -86524282 - B1_Mur1 SINE Alu -32 117 7 3 1088 300 277 32 0 chr5 66013074 66013168 -86524091 + PB1 SINE Alu 31 127 0 3 1088 207 0 0 0 chr5 66013458 66013481 -86523778 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1088 384 295 71 0 chr5 66013628 66013740 -86523519 + RSINE1 SINE B4 3 122 -43 3 1088 24 53 0 0 chr5 66013995 66014033 -86523226 + AT_rich Low_complexity Low_complexity 1 38 0 3 1088 1034 64 43 0 chr5 66014579 66014720 -86522539 - B1_Mm SINE Alu 0 147 1 4 1088 635 253 75 11 chr5 66014819 66015007 -86522252 + B3 SINE B2 2 201 -15 4 1088 260 293 158 20 chr5 66015439 66015540 -86521719 - PB1D7 SINE Alu -5 115 1 4 1088 1332 102 0 11 chr5 66016406 66016595 -86520664 + B2_Mm2 SINE B2 2 188 -7 4 1088 577 183 9 1 chr5 66016604 66016714 -86520545 + B1_Mus1 SINE Alu 1 115 -5 4 1088 240 111 0 0 chr5 66016715 66016760 -86520499 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 4 1088 1019 116 7 0 chr5 66017020 66017166 -86520093 - B1_Mus1 SINE Alu 0 148 2 4 1088 292 292 60 2 chr5 66017683 66017785 -86519474 - ID_B1 SINE B4 -177 115 5 4 1088 1335 35 123 0 chr5 66017864 66018035 -86519224 - B2_Mm1a SINE B2 0 193 2 4 1088 216 237 0 26 chr5 66018201 66018279 -86518980 + A-rich Low_complexity Low_complexity 1 76 0 4 1088 1090 48 14 14 chr5 66020538 66020685 -86516574 + B1_Mus2 SINE Alu 1 147 0 5 1088 180 97 0 0 chr5 66020689 66020720 -86516539 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1088 21 0 0 0 chr5 66020976 66020997 -86516262 + AT_rich Low_complexity Low_complexity 1 21 0 5 1088 596 197 80 7 chr5 66021874 66022012 -86515247 - B1_Mur2 SINE Alu -1 148 1 5 1088 508 269 106 30 chr5 66022648 66022847 -86514412 + B3A SINE B2 3 216 0 5 1088 399 208 75 0 chr5 66023097 66023203 -86514056 + L1M4 LINE L1 4700 4813 -1333 5 1088 183 42 0 0 chr5 66023229 66023253 -86514006 + (CAA)n Simple_repeat Simple_repeat 2 25 0 5 1088 262 332 54 47 chr5 66023444 66023511 -86513748 + ID_B1 SINE B4 33 216 -8 5 1088 273 330 129 9 chr5 66023511 66023627 -86513632 + B1_Mur1 SINE Alu 12 141 -8 5 1088 305 102 50 17 chr5 66023668 66023728 -86513531 + L1M LINE L1 5328 5389 -2396 5 1088 24 0 0 0 chr5 66023764 66023788 -86513471 + AT_rich Low_complexity Low_complexity 1 24 0 6 1088 279 282 68 15 chr5 66023800 66023933 -86513326 + L1M LINE L1 5509 5648 -526 5 1088 411 283 53 30 chr5 66024211 66024342 -86512917 + RSINE1 SINE B4 7 140 -25 6 1088 559 299 15 0 chr5 66024380 66024514 -86512745 + B1_Mur3 SINE Alu 3 138 -11 6 1088 393 284 101 29 chr5 66024551 66024676 -86512583 + B1_Mur1 SINE Alu 2 136 -13 6 1088 225 83 0 0 chr5 66024676 66024712 -86512547 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 6 1088 393 284 101 29 chr5 66024712 66024724 -86512535 + B1_Mur1 SINE Alu 137 148 -1 6 1088 638 233 116 5 chr5 66024974 66025164 -86512095 + B3 SINE B2 2 212 -4 6 1088 306 0 0 0 chr5 66025288 66025322 -86511937 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1088 1419 223 111 12 chr5 66025732 66026064 -86511195 + ORR1D1 LTR MaLR 3 367 -7 6 1088 22 80 0 0 chr5 66026859 66026909 -86510350 + AT_rich Low_complexity Low_complexity 1 50 0 6 1088 294 269 275 42 chr5 66027695 66027815 -86509444 - B3A SINE B2 -49 149 2 6 1088 246 273 15 29 chr5 66028197 66028265 -86508994 - ID4_ SINE ID -15 68 2 7 1088 400 279 0 42 chr5 66029365 66029484 -86507775 + PB1D7 SINE Alu 4 118 -2 7 1088 1258 34 0 0 chr5 66029489 66029635 -86507624 + B1_Mm SINE Alu 2 147 0 7 1088 206 159 23 0 chr5 66029635 66029679 -86507580 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 7 1088 25 31 0 0 chr5 66030202 66030234 -86507025 + AT_rich Low_complexity Low_complexity 1 32 0 7 1088 499 344 65 7 chr5 66030280 66030435 -86506824 + RSINE1 SINE B4 2 165 0 7 1088 480 286 56 33 chr5 66030831 66031044 -86506215 + ID_B1 SINE B4 1 218 -6 7 1088 1356 62 51 0 chr5 66031203 66031380 -86505879 - B2_Mm2 SINE B2 -9 186 1 7 1088 195 42 0 0 chr5 66031578 66031602 -86505657 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1088 235 333 62 62 chr5 66031715 66031827 -86505432 + B3A SINE B2 3 114 -84 7 1088 533 277 45 107 chr5 66032184 66032362 -86504897 - B3A SINE B2 0 195 29 8 1088 472 200 101 31 chr5 66032364 66032493 -86504766 + B1_Mur3 SINE Alu 1 138 -11 8 1088 329 312 0 30 chr5 66032541 66032640 -86504619 - RSINE1 SINE B4 -61 104 9 8 1088 576 264 23 23 chr5 66032846 66032978 -86504281 - B1_Mur2 SINE Alu 0 149 18 8 1088 475 281 23 23 chr5 66033051 66033182 -86504077 + B1F2 SINE Alu 11 141 -8 8 1088 489 326 15 7 chr5 66033787 66033923 -86503336 - B1_Mur1 SINE Alu 0 149 13 8 1088 238 254 13 118 chr5 66034199 66034275 -86502984 + ID4_ SINE ID 4 71 -12 8 1088 225 0 0 0 chr5 66034275 66034300 -86502959 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1088 674 313 80 66 chr5 66034535 66034898 -86502361 + MLT1B LTR MaLR 18 385 -5 8 1088 26 0 0 0 chr5 66035083 66035109 -86502150 + AT_rich Low_complexity Low_complexity 1 26 0 8 1088 28 0 0 0 chr5 66036030 66036058 -86501201 + AT_rich Low_complexity Low_complexity 1 28 0 9 1088 282 281 112 37 chr5 66036075 66036182 -86501077 - RSINE1 SINE B4 -8 157 43 9 1088 328 311 230 0 chr5 66037784 66037945 -86499314 + B3A SINE B2 1 198 0 9 1088 609 191 236 28 chr5 66038093 66038271 -86498988 + B3 SINE B2 2 216 0 9 1088 499 260 44 57 chr5 66038697 66038856 -86498403 + MTEa LTR MaLR 223 379 0 9 1088 814 147 35 14 chr5 66039312 66039457 -86497802 - B1_Mur3 SINE Alu -1 148 1 9 1088 2033 251 178 41 chr5 66039863 66040807 -86496452 + Lx9 LINE L1 6567 7639 -5 9 1088 274 218 13 0 chr5 66040820 66040890 -86496369 - B1_Mur2 SINE Alu 0 149 47 9 1088 1938 222 76 39 chr5 66041061 66041577 -86495682 + RMER1B Other Other 521 1055 -11 9 1088 341 206 35 21 chr5 66041879 66041993 -86495266 - PB1D7 SINE Alu -35 114 6 9 1088 189 0 0 0 chr5 66042041 66042062 -86495197 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 9 1088 438 183 0 0 chr5 66043159 66043230 -86494029 + B1_Mur2 SINE Alu 48 118 -31 1 1088 1160 56 0 0 chr5 66043342 66043485 -86493774 + B1_Mus1 SINE Alu 1 143 -5 1 1088 377 128 26 0 chr5 66043492 66043570 -86493689 + GA-rich Low_complexity Low_complexity 3 82 0 1 1088 279 0 0 0 chr5 66043570 66043601 -86493658 + (CAGT)n Simple_repeat Simple_repeat 1 31 0 1 1088 22 0 0 0 chr5 66043867 66043889 -86493370 + AT_rich Low_complexity Low_complexity 1 22 0 1 1088 206 108 54 0 chr5 66044039 66044076 -86493183 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1088 793 222 80 21 chr5 66044089 66044328 -86492931 + Lx4B LINE L1 6802 7054 -4 1 1088 25 31 0 0 chr5 66044415 66044447 -86492812 + AT_rich Low_complexity Low_complexity 1 32 0 1 1088 322 221 0 136 chr5 66044578 66044688 -86492571 + B1_Mm SINE Alu 40 135 -14 1 1088 234 128 0 0 chr5 66044804 66044843 -86492416 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 1088 780 120 0 88 chr5 66044853 66044990 -86492269 - B1_Mur2 SINE Alu -8 141 17 1 1088 442 205 115 41 chr5 66045504 66045626 -86491633 + B1_Mur2 SINE Alu 10 140 -9 1 1088 1171 207 109 181 chr5 66047885 66048381 -86488878 + RMER4B LTR ERVK 1 467 -118 1 1088 641 231 214 0 chr5 66048656 66048829 -86488430 + B3 SINE B2 1 210 -6 1 1088 1136 51 0 0 chr5 66048853 66048991 -86488268 + B1_Mus1 SINE Alu 2 139 -9 1 1088 240 59 0 0 chr5 66048991 66049025 -86488234 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1088 21 0 0 0 chr5 66049146 66049167 -86488092 + AT_rich Low_complexity Low_complexity 1 21 0 1 1088 291 208 221 0 chr5 66049248 66049325 -86487934 + B1_Mur1 SINE Alu 47 140 -9 1 1088 249 347 0 62 chr5 66050006 66050086 -86487173 + ID4 SINE ID 5 79 -4 1 1088 219 404 26 35 chr5 66050086 66050119 -86487140 + ID_B1 SINE B4 5 116 -108 1 1088 251 223 165 31 chr5 66050141 66050238 -86487021 - PB1D9 SINE Alu -4 116 7 1 1088 599 229 149 29 chr5 66050496 66050671 -86486588 + B3 SINE B2 15 210 -6 1 1088 311 308 11 0 chr5 66051043 66051134 -86486125 - PB1D10 SINE Alu -1 116 25 1 1088 214 300 36 36 chr5 66051180 66051263 -86485996 + PB1D7 SINE Alu 25 107 -13 1 1088 227 339 0 16 chr5 66051278 66051341 -86485918 + ID4 SINE ID 4 65 -18 1 1088 226 325 26 13 chr5 66051341 66051356 -86485903 + ID SINE ID 4 82 -142 1 1088 478 114 0 0 chr5 66052046 66052116 -86485143 + U6 snRNA snRNA 36 105 -2 1 1088 729 110 0 0 chr5 66052117 66052226 -86485033 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 1 1088 262 241 19 0 chr5 66052256 66052310 -86484949 + PB1D9 SINE Alu 2 56 -64 1 1088 945 119 0 0 chr5 66052377 66052511 -86484748 + B1_Mus1 SINE Alu 5 138 -10 1 1088 270 0 0 0 chr5 66052533 66052563 -86484696 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1088 525 282 186 0 chr5 66052750 66052906 -86484353 - B4 SINE B4 -105 187 3 1 1088 235 215 99 25 chr5 66053065 66053146 -86484113 + MER33 DNA MER1_type 215 301 -23 1 1088 311 211 13 90 chr5 66053312 66053390 -86483869 + ID2 SINE ID 1 72 -11 1 1088 189 154 0 0 chr5 66053408 66053447 -86483812 + (CATA)n Simple_repeat Simple_repeat 3 41 0 1 1088 1852 290 123 43 chr5 66053571 66054393 -86482866 + Lx8 LINE L1 6267 7154 -319 1 1088 396 0 0 0 chr5 66054479 66054523 -86482736 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1088 723 43 0 0 chr5 66054528 66054622 -86482637 - BC1_Mm scRNA scRNA -58 94 1 1 1088 26 0 0 0 chr5 66054629 66054655 -86482604 + AT_rich Low_complexity Low_complexity 1 26 0 1 1088 21 57 0 0 chr5 66054667 66054702 -86482557 + AT_rich Low_complexity Low_complexity 1 35 0 1 1088 312 297 76 30 chr5 66054775 66054907 -86482352 + B1F SINE Alu 1 138 -11 1 1088 22 35 0 0 chr5 66055756 66055785 -86481474 + AT_rich Low_complexity Low_complexity 1 29 0 1 1088 345 234 53 11 chr5 66056326 66056421 -86480838 - Tigger7 DNA MER2_type -82 2409 2311 1 1088 638 260 98 16 chr5 66056738 66056922 -86480337 + B3 SINE B2 7 205 -11 1 1088 310 296 0 0 chr5 66058201 66058272 -86478987 + B1F SINE Alu 66 136 -13 1 1088 253 291 190 22 chr5 66058308 66058487 -86478772 - MLT1F1 LTR MaLR 0 569 361 1 1088 226 286 0 0 chr5 66058601 66058664 -86478595 - MLT1F1 LTR MaLR -428 120 58 1 1088 280 151 19 19 chr5 66058730 66058784 -86478475 + MTD LTR MaLR 1 54 -365 1 1088 782 234 59 15 chr5 66058792 66058996 -86478263 - B3 SINE B2 0 216 4 1 1088 947 127 177 0 chr5 66059031 66059189 -86478070 + B2_Mm1t SINE B2 2 187 -6 1 1088 192 40 0 0 chr5 66059217 66059242 -86478017 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1088 880 198 132 184 chr5 66059243 66059431 -86477828 + MTD LTR MaLR 66 215 -204 1 1088 1243 41 0 0 chr5 66059431 66059578 -86477681 + B1_Mus2 SINE Alu 1 147 0 1 1088 880 198 132 184 chr5 66059578 66059754 -86477505 + MTD LTR MaLR 216 411 -8 1 1088 292 323 137 87 chr5 66059757 66059998 -86477261 + MLT1H2 LTR MaLR 31 283 -206 1 1089 267 287 43 17 chr5 66060321 66060438 -86476821 - L1MD LINE L1 -1050 5096 4977 1 1089 439 328 78 26 chr5 66060776 66061045 -86476214 - B4A SINE B4 -8 284 2 1 1089 249 262 17 86 chr5 66061091 66061105 -86476154 + ID_B1 SINE B4 114 181 -43 1 1089 547 144 21 0 chr5 66061105 66061202 -86476057 + B1_Mus2 SINE Alu 41 139 -8 1 1089 561 185 116 16 chr5 66061299 66061420 -86475839 + B1_Mur3 SINE Alu 1 133 -16 1 1089 315 195 109 54 chr5 66061420 66061512 -86475747 + B1_Mur1 SINE Alu 52 148 -1 1 1089 375 302 75 66 chr5 66061799 66061892 -86475367 - MER21B LTR ERV1 -109 754 655 1 1089 988 152 33 33 chr5 66061892 66062076 -86475183 + B2_Mm2 SINE B2 2 185 -10 1 1089 375 302 75 66 chr5 66062076 66062209 -86475050 - MER21B LTR ERV1 -209 654 526 1 1089 290 330 53 0 chr5 66062309 66062403 -86474856 + B1F1 SINE Alu 14 112 -37 1 1089 187 79 26 26 chr5 66062443 66062482 -86474777 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1089 455 197 241 33 chr5 66062596 66062780 -86474479 - MTD LTR MaLR -14 405 194 1 1089 609 183 0 17 chr5 66062772 66062889 -86474370 - B1F1 SINE Alu -6 143 29 1 1089 28 61 0 0 chr5 66063079 66063128 -86474131 + AT_rich Low_complexity Low_complexity 1 49 0 1 1089 570 199 215 4 chr5 66063323 66063560 -86473699 + L1M4 LINE L1 3176 3462 -2684 1 1089 246 226 140 0 chr5 66063694 66063787 -86473472 + L1M4 LINE L1 3664 3769 -2377 1 1089 813 139 78 28 chr5 66063837 66063978 -86473281 - B1_Mus1 SINE Alu 0 148 1 1 1089 1359 200 76 68 chr5 66063980 66064195 -86473064 + MTD LTR MaLR 6 209 -210 1 1089 644 226 32 0 chr5 66064195 66064319 -86472940 + B1_Mur2 SINE Alu 5 132 -17 1 1089 1359 200 76 68 chr5 66064319 66064500 -86472759 + MTD LTR MaLR 210 405 -14 1 1089 584 202 99 16 chr5 66064500 66064691 -86472568 + L1M4 LINE L1 3751 3957 -2189 1 1089 1087 56 42 14 chr5 66065808 66065952 -86471307 + B1_Mus1 SINE Alu 1 148 0 1 1089 352 260 36 0 chr5 66066008 66066117 -86471142 + MTD LTR MaLR 14 135 -286 1 1089 716 216 88 16 chr5 66066136 66066329 -86470930 + MTD LTR MaLR 200 406 -13 1 1089 431 242 58 43 chr5 66066395 66066533 -86470726 + ID_B1 SINE B4 80 219 -5 1 1089 489 260 54 16 chr5 66066545 66066732 -86470527 + B3 SINE B2 1 207 -9 1 1089 447 288 30 22 chr5 66066781 66066916 -86470343 + RSINE1 SINE B4 2 137 -28 1 1089 846 266 68 64 chr5 66066918 66067419 -86469840 + L1M2 LINE L1 4386 4888 -1255 1 1089 383 264 43 136 chr5 66067432 66067594 -86469665 + B1_Mur1 SINE Alu 2 148 -1 1 1089 218 0 0 0 chr5 66067751 66067780 -86469479 + B3 SINE B2 2 30 -186 1 1089 1118 76 0 20 chr5 66067823 66067971 -86469288 + B1_Mus2 SINE Alu 3 147 0 1 1089 270 204 90 3 chr5 66067975 66068067 -86469192 + L1M4 LINE L1 4741 4842 -1304 1 1089 1458 73 0 20 chr5 66068067 66068262 -86468997 - B2_Mm2 SINE B2 -4 191 1 1 1089 240 250 143 13 chr5 66068262 66068323 -86468936 + L1M4 LINE L1 4843 4913 -1233 1 1089 589 102 0 48 chr5 66068367 66068470 -86468789 + B1_Mus2 SINE Alu 37 134 -13 1 1089 384 251 26 113 chr5 66068493 66068582 -86468677 + L1M4 LINE L1 4921 4999 -1147 1 1089 673 239 139 16 chr5 66068582 66068769 -86468490 + B3 SINE B2 1 210 -6 1 1089 384 251 26 113 chr5 66068769 66068804 -86468455 + L1M4 LINE L1 5000 5021 -1125 1 1089 617 126 71 18 chr5 66068804 66068917 -86468342 + PB1D9 SINE Alu 2 120 0 1 1089 384 251 26 113 chr5 66068917 66069056 -86468203 + L1M4 LINE L1 5022 5162 -984 1 1089 468 0 0 0 chr5 66069151 66069203 -86468056 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1089 367 283 71 0 chr5 66069261 66069374 -86467885 - RSINE1 SINE B4 -30 135 15 1 1089 1242 34 0 0 chr5 66069485 66069632 -86467627 + B1_Mus2 SINE Alu 1 147 0 1 1089 464 315 24 0 chr5 66069666 66069793 -86467466 + ID_B1 SINE B4 81 210 -14 1 1089 4385 155 104 18 chr5 66069804 66070633 -86466626 + RMER19B LTR ERVK 3 902 0 1 1089 399 114 136 0 chr5 66070745 66070833 -86466426 + Lx3_Mus LINE L1 6910 7009 0 1 1089 273 330 0 0 chr5 66071884 66071975 -86465284 + ID_B1 SINE B4 133 223 -1 1 1089 307 208 223 8 chr5 66072062 66072183 -86465076 + B1_Mus2 SINE Alu 1 147 0 1 1089 447 329 0 46 chr5 66072320 66072481 -86464778 + ID_B1 SINE B4 69 216 -8 1 1089 1239 126 22 0 chr5 66072525 66072708 -86464551 + B2_Mm2 SINE B2 1 187 -8 1 1089 1135 49 21 0 chr5 66072718 66072861 -86464398 + B1_Mus2 SINE Alu 1 146 -1 1 1089 1504 17 78 0 chr5 66073385 66073545 -86463714 + B2_Mm1a SINE B2 1 160 -33 1 1089 186 43 0 0 chr5 66073545 66073568 -86463691 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1089 1504 17 78 0 chr5 66073568 66073586 -86463673 + B2_Mm1a SINE B2 161 191 -2 1 1089 1454 68 0 30 chr5 66073699 66073897 -86463362 - B2_Mm2 SINE B2 -2 193 2 1 1089 33 25 0 0 chr5 66073900 66073940 -86463319 + AT_rich Low_complexity Low_complexity 1 40 0 1 1089 546 253 119 16 chr5 66074029 66074222 -86463037 + B3 SINE B2 1 213 -3 1 1089 269 299 46 0 chr5 66074257 66074344 -86462915 + B1_Mus2 SINE Alu 2 92 -55 1 1089 198 0 0 0 chr5 66074355 66074377 -86462882 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2 1089 646 273 75 60 chr5 66074400 66074665 -86462594 + B4A SINE B4 5 273 -19 2 1089 296 341 94 8 chr5 66074875 66074898 -86462361 + B4 SINE B4 65 98 -194 2 1089 659 186 65 0 chr5 66074898 66075022 -86462237 + B1_Mur3 SINE Alu 2 133 -16 2 1089 327 313 40 0 chr5 66075146 66075245 -86462014 - PB1D10 SINE Alu -17 103 1 2 1089 536 239 8 10 chr5 66075409 66075559 -86461700 + B1_Mur3 SINE Alu 1 144 -5 2 1089 1501 73 16 0 chr5 66075718 66075909 -86461350 + B2_Mm2 SINE B2 2 195 0 2 1089 1203 54 0 0 chr5 66076191 66076338 -86460921 + B1_Mus1 SINE Alu 1 147 -1 2 1089 245 29 0 29 chr5 66076338 66076373 -86460886 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2 1089 687 211 35 47 chr5 66076544 66076713 -86460546 + B3 SINE B2 46 212 -4 2 1089 503 259 122 12 chr5 66076730 66076894 -86460365 + B3A SINE B2 2 183 -15 2 1089 802 244 76 0 chr5 66077024 66077221 -86460038 + B3 SINE B2 2 213 -3 2 1089 528 198 213 8 chr5 66077232 66077354 -86459905 + B1_Mus1 SINE Alu 1 147 -1 2 1089 1042 71 43 0 chr5 66077390 66077530 -86459729 + B1_Mus2 SINE Alu 2 147 0 2 1089 657 258 25 12 chr5 66077611 66077772 -86459487 + RSINE1 SINE B4 3 165 0 2 1089 647 85 0 0 chr5 66077909 66078003 -86459256 + B1_Mm SINE Alu 54 147 0 2 1089 222 358 0 0 chr5 66078084 66078151 -86459108 + B4A SINE B4 11 77 -215 2 1089 491 236 74 57 chr5 66078216 66078391 -86458868 + B3 SINE B2 39 216 0 2 1089 222 204 20 0 chr5 66078446 66078495 -86458764 + B1F2 SINE Alu 49 98 -51 2 1089 374 145 0 0 chr5 66078982 66079044 -86458215 + L1MC1 LINE L1 6271 6332 -1 2 1089 623 182 63 0 chr5 66079060 66079186 -86458073 + B1_Mus2 SINE Alu 14 147 0 2 1089 385 283 80 19 chr5 66079954 66080116 -86457143 + L1MC4 LINE L1 6701 6872 -1170 2 1089 440 247 0 0 chr5 66080840 66080937 -86456322 + MTD LTR MaLR 11 107 -312 2 1089 1707 21 0 0 chr5 66080966 66081155 -86456104 - B2_Mm1a SINE B2 -4 189 1 2 1089 490 198 81 0 chr5 66081158 66081269 -86455990 - B1_Mur1 SINE Alu 0 149 30 2 1089 548 224 132 26 chr5 66081267 66081418 -86455841 + MTD LTR MaLR 108 274 -145 2 1089 955 196 66 10 chr5 66081764 66081960 -86455299 + B3 SINE B2 3 209 -7 2 1089 221 290 0 0 chr5 66081991 66082053 -86455206 + ID2 SINE ID 2 63 -20 2 1089 761 119 75 53 chr5 66082097 66082230 -86455029 + B1_Mur4 SINE Alu 3 138 -12 2 1089 189 0 0 0 chr5 66082230 66082251 -86455008 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 2 1089 873 85 46 0 chr5 66082594 66082724 -86454535 - B1_Mus1 SINE Alu -1 147 12 2 1089 309 26 0 0 chr5 66082759 66082797 -86454462 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1089 1207 62 0 0 chr5 66082935 66083081 -86454178 + B1_Mus2 SINE Alu 1 146 -1 2 1089 365 220 182 9 chr5 66083420 66083530 -86453729 + B1_Mur2 SINE Alu 13 141 -8 2 1089 937 32 8 0 chr5 66083534 66083657 -86453602 + B1_Mus2 SINE Alu 24 147 0 2 1089 402 219 37 0 chr5 66083736 66083806 -86453453 + ID_B1 SINE B4 106 178 -46 2 1089 453 260 34 102 chr5 66083806 66083982 -86453277 + RSINE1 SINE B4 1 164 -1 2 1089 1081 84 14 0 chr5 66084107 66084250 -86453009 + B1_Mus1 SINE Alu 2 146 -2 2 1089 460 301 89 47 chr5 66084294 66084507 -86452752 + ID_B1 SINE B4 3 224 0 2 1089 189 0 0 0 chr5 66084507 66084528 -86452731 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1089 354 255 134 18 chr5 66084746 66084858 -86452401 - RSINE1 SINE B4 -25 140 16 2 1089 670 234 21 0 chr5 66084924 66085069 -86452190 - B1_Mur1 SINE Alu -1 148 1 2 1089 24 0 0 0 chr5 66085074 66085098 -86452161 + AT_rich Low_complexity Low_complexity 1 24 0 2 1089 469 184 188 60 chr5 66085098 66085231 -86452028 - B1_Mur4 SINE Alu 0 150 1 2 1089 411 274 56 56 chr5 66085367 66085510 -86451749 + B4 SINE B4 142 284 -8 2 1089 294 50 0 0 chr5 66085543 66085583 -86451676 + (T)n Simple_repeat Simple_repeat 1 40 0 2 1089 1174 48 0 27 chr5 66085583 66085733 -86451526 - B1_Mm SINE Alu 0 147 2 2 1089 1571 154 191 8 chr5 66085763 66086130 -86451129 + RMER4A LTR ERVK 33 466 0 2 1089 241 242 197 0 chr5 66086224 66086290 -86450969 + B1_Mus1 SINE Alu 30 108 -40 2 1089 848 141 277 0 chr5 66086658 66086835 -86450424 - URR1A DNA MER1_type 0 226 1 2 1089 1551 43 37 0 chr5 66086933 66087120 -86450139 - B2_Mm2 SINE B2 0 195 2 2 1089 21 0 0 0 chr5 66088632 66088653 -86448606 + GC_rich Low_complexity Low_complexity 1 21 0 2 1089 31 82 0 0 chr5 66088677 66088750 -86448509 + GC_rich Low_complexity Low_complexity 1 73 0 2 1089 207 0 0 0 chr5 66089096 66089119 -86448140 + (CCG)n Simple_repeat Simple_repeat 2 24 0 2 1089 210 162 13 26 chr5 66089284 66089360 -86447899 + (CCCG)n Simple_repeat Simple_repeat 4 78 0 2 1089 23 54 0 0 chr5 66089374 66089411 -86447848 + GC_rich Low_complexity Low_complexity 1 37 0 2 1089 26 64 0 0 chr5 66089589 66089636 -86447623 + GC_rich Low_complexity Low_complexity 1 47 0 2 1089 1111 41 19 65 chr5 66090289 66090444 -86446815 + B1_Mus1 SINE Alu 1 148 0 2 1089 741 155 27 53 chr5 66090459 66090609 -86446650 + B1_Mur4 SINE Alu 5 150 0 2 1089 701 155 147 0 chr5 66090640 66090769 -86446490 + B1_Mus1 SINE Alu 1 148 0 2 1089 219 233 0 0 chr5 66090948 66090991 -86446268 + B1F SINE Alu 19 61 -88 2 1089 437 200 77 129 chr5 66091045 66091200 -86446059 - B1F1 SINE Alu -1 148 2 2 1089 963 182 325 14 chr5 66091278 66091567 -86445692 - ORR1C2 LTR MaLR -2 382 4 2 1089 392 132 0 35 chr5 66091894 66091918 -86445341 + T-rich Low_complexity Low_complexity 60 83 0 2 1089 1248 54 0 0 chr5 66091918 66092066 -86445193 - B1_Mus1 SINE Alu 0 148 1 2 1089 392 132 0 35 chr5 66092066 66092127 -86445132 + T-rich Low_complexity Low_complexity 2 59 0 2 1089 937 102 0 21 chr5 66092127 66092268 -86444991 - B1_Mus1 SINE Alu 0 148 11 2 1089 3234 66 19 0 chr5 66092277 66092699 -86444560 - L1_Mus3 LINE L1 -16 6622 6193 2 1089 535 188 243 0 chr5 66092821 66092965 -86444294 + ID_B1 SINE B4 4 182 -42 2 1089 343 208 122 20 chr5 66092883 66092981 -86444278 + PB1D10 SINE Alu 10 117 0 2 1089 875 125 263 17 chr5 66093101 66093280 -86443979 - URR1A DNA MER1_type -3 223 1 2 1089 189 0 0 0 chr5 66093461 66093482 -86443777 + (CTG)n Simple_repeat Simple_repeat 2 22 0 2 1089 1161 73 30 6 chr5 66093559 66093725 -86443534 + B2_Mm1t SINE B2 2 171 -22 2 1089 189 0 0 0 chr5 66093729 66093750 -86443509 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 1089 2182 86 13 6 chr5 66093879 66094196 -86443063 + ORR1A2 LTR MaLR 1 319 -8 2 1089 300 186 0 0 chr5 66094247 66094306 -86442953 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1089 521 246 89 93 chr5 66094306 66094597 -86442662 - B4A SINE B4 0 292 3 2 1089 182 65 65 0 chr5 66094614 66094645 -86442614 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 2 1089 567 234 65 7 chr5 66095039 66095177 -86442082 - B1F SINE Alu 0 149 4 2 1089 376 130 43 0 chr5 66095321 66095390 -86441869 + B1F SINE Alu 78 149 0 2 1089 202 316 0 0 chr5 66095990 66096047 -86441212 + CT-rich Low_complexity Low_complexity 4 60 0 2 1089 219 114 0 0 chr5 66096063 66096098 -86441161 + (TCC)n Simple_repeat Simple_repeat 2 36 0 2 1089 250 0 0 91 chr5 66096309 66096353 -86440906 + (CCCTG)n Simple_repeat Simple_repeat 3 42 0 2 1089 263 38 75 0 chr5 66096485 66096538 -86440721 + (TC)n Simple_repeat Simple_repeat 1 57 0 2 1089 242 256 45 68 chr5 66096569 66096657 -86440602 - B3 SINE B2 -1 215 130 2 1089 250 234 246 27 chr5 66097034 66097144 -86440115 + B1F2 SINE Alu 1 134 -15 2 1089 1027 102 24 0 chr5 66097147 66097313 -86439946 + (GGAA)n Simple_repeat Simple_repeat 3 172 0 2 1089 860 151 7 0 chr5 66097324 66097463 -86439796 + B1_Mur4 SINE Alu 11 150 0 2 1089 258 193 0 0 chr5 66097463 66097520 -86439739 + A-rich Low_complexity Low_complexity 1 57 0 2 1089 340 189 92 57 chr5 66097523 66097680 -86439579 + B3 SINE B2 8 209 -7 2 1089 470 223 101 61 chr5 66097690 66097838 -86439421 + ID_B1 SINE B4 2 155 -69 2 1089 1357 78 0 45 chr5 66097848 66098049 -86439210 + B2_Mm2 SINE B2 3 194 -1 2 1089 293 211 0 0 chr5 66098189 66098246 -86439013 + MER31A LTR ERV1 27 83 -402 2 1089 798 260 60 60 chr5 66098261 66098609 -86438650 + MER54A LTR ERVL 530 877 -24 2 1089 1262 109 60 0 chr5 66098818 66099001 -86438258 - B2_Mm2 SINE B2 -1 194 1 2 1089 567 0 0 0 chr5 66099011 66099074 -86438185 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 2 1089 1064 73 15 0 chr5 66099074 66099211 -86438048 - B1_Mus2 SINE Alu -8 139 1 2 1089 408 239 54 30 chr5 66099213 66099381 -86437878 + MER57A-int LTR ERV1 1404 1575 -4612 2 1089 577 216 108 49 chr5 66099421 66099625 -86437634 + B3 SINE B2 1 216 0 2 1089 521 163 0 42 chr5 66099663 66099759 -86437500 + B3 SINE B2 16 107 -109 2 1089 654 210 49 7 chr5 66099845 66099989 -86437270 + B3A SINE B2 1 150 -48 2 1089 1489 78 5 0 chr5 66100211 66100402 -86436857 + B2_Mm1t SINE B2 2 193 0 2 1089 759 145 78 48 chr5 66100414 66100581 -86436678 + B2_Mm2 SINE B2 2 173 -22 3 1089 270 185 19 0 chr5 66100640 66100694 -86436565 + ID4_ SINE ID 13 67 -16 3 1089 1082 123 23 0 chr5 66100767 66100938 -86436321 + B2_Mm1t SINE B2 2 176 -17 3 1089 654 92 8 114 chr5 66100960 66101083 -86436176 + B1_Mus2 SINE Alu 38 147 0 3 1089 194 0 39 0 chr5 66101088 66101114 -86436145 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 3 1089 292 94 398 18 chr5 66101170 66101278 -86435981 + B2_Mm2 SINE B2 47 195 0 3 1089 615 255 13 26 chr5 66101618 66101771 -86435488 - RSINE1 SINE B4 -4 161 11 3 1089 329 311 28 28 chr5 66101891 66102000 -86435259 + PB1D10 SINE Alu 8 116 -1 3 1089 279 177 80 40 chr5 66102178 66102278 -86434981 - B2_Mm2 SINE B2 -4 191 88 3 1089 525 236 203 31 chr5 66102260 66102491 -86434768 + RMER4B LTR ERVK 343 576 -9 3 1089 739 54 59 0 chr5 66102543 66102656 -86434603 - B2_Mm2 SINE B2 -5 190 73 3 1089 363 44 0 0 chr5 66102673 66102718 -86434541 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 3 1089 621 221 97 0 chr5 66102718 66102872 -86434387 - B3 SINE B2 -16 200 32 3 1089 586 200 100 0 chr5 66102901 66103031 -86434228 - B1_Mur3 SINE Alu -6 143 1 3 1089 356 300 92 8 chr5 66103042 66103173 -86434086 - ID_B1 SINE B4 -2 222 81 3 1089 1121 67 0 0 chr5 66103213 66103363 -86433896 - B2_Mm2 SINE B2 -44 151 2 3 1089 550 202 19 0 chr5 66103482 66103586 -86433673 + B1_Mur1 SINE Alu 44 149 0 3 1089 398 53 0 17 chr5 66103620 66103678 -86433581 + B2_Mm2 SINE B2 1 57 -138 3 1089 1025 244 217 10 chr5 66103718 66104119 -86433140 - Lx8 LINE L1 -22 7451 6968 3 1089 458 307 26 0 chr5 66104157 66104271 -86432988 + ID_B1 SINE B4 82 198 -26 3 1089 218 105 26 0 chr5 66104272 66104310 -86432949 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1089 280 147 137 0 chr5 66104310 66104405 -86432854 + RCHARR1 DNA MER1_type 797 904 -70 3 1089 403 313 105 38 chr5 66104736 66104945 -86432314 - B4A SINE B4 -68 224 2 3 1089 281 247 110 0 chr5 66105115 66105188 -86432071 + PB1 SINE Alu 12 92 -35 3 1089 1252 41 0 0 chr5 66105212 66105359 -86431900 + B1_Mus1 SINE Alu 1 147 -1 3 1089 218 256 44 44 chr5 66105375 66105465 -86431794 + B4A SINE B4 85 174 -118 3 1089 397 211 19 9 chr5 66105385 66105490 -86431769 + PB1D10 SINE Alu 11 116 -1 3 1089 279 197 41 27 chr5 66105551 66105624 -86431635 + ID_B1 SINE B4 151 224 0 3 1089 231 254 119 0 chr5 66106137 66106204 -86431055 + ID SINE ID 1 75 -149 3 1089 323 264 35 0 chr5 66106249 66106336 -86430923 - MER2 DNA MER2_type -45 300 211 3 1089 845 209 21 11 chr5 66106336 66106525 -86430734 - B3 SINE B2 -25 191 1 3 1089 222 313 9 83 chr5 66106525 66106609 -86430650 - RSINE1 SINE B4 -81 84 4 3 1089 603 209 116 0 chr5 66106614 66106743 -86430516 - B1_Mus2 SINE Alu -2 145 2 3 1089 252 291 0 60 chr5 66106743 66106821 -86430438 - B1F2 SINE Alu -75 74 1 3 1089 304 244 84 78 chr5 66106821 66106961 -86430298 - MER2 DNA MER2_type -123 222 82 3 1089 327 241 26 53 chr5 66106984 66107098 -86430161 - PB1D10 SINE Alu 0 117 7 3 1089 508 267 8 0 chr5 66107119 66107250 -86430009 - ID_B1 SINE B4 0 224 93 3 1089 573 279 7 7 chr5 66107489 66107626 -86429633 - RSINE1 SINE B4 -17 148 12 3 1089 1213 102 32 0 chr5 66107697 66107883 -86429376 + B2_Mm1t SINE B2 1 192 -1 3 1089 1163 75 0 0 chr5 66107955 66108101 -86429158 + B1_Mm SINE Alu 2 147 0 3 1089 189 0 0 0 chr5 66108101 66108122 -86429137 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1089 29 0 0 0 chr5 66108261 66108290 -86428969 + AT_rich Low_complexity Low_complexity 1 29 0 3 1089 1223 35 89 89 chr5 66108343 66108534 -86428725 - B2_Mm1a SINE B2 -1 192 2 3 1089 208 121 0 0 chr5 66108652 66108685 -86428574 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 3 1089 252 0 0 0 chr5 66108699 66108727 -86428532 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1089 388 276 22 52 chr5 66108980 66109114 -86428145 + ID_B1 SINE B4 87 216 -8 3 1089 439 254 48 32 chr5 66108996 66109122 -86428137 + B1F SINE Alu 22 149 0 3 1089 461 259 61 0 chr5 66109127 66109258 -86428001 + ID_B1 SINE B4 79 217 -7 3 1089 1162 21 50 0 chr5 66109346 66109487 -86427772 - B1_Mus1 SINE Alu 0 148 1 3 1089 227 281 68 34 chr5 66109855 66109973 -86427286 - PB1 SINE Alu -4 123 2 3 1089 214 279 0 0 chr5 66109994 66110055 -86427204 + T-rich Low_complexity Low_complexity 1 61 0 3 1089 1311 98 60 0 chr5 66110086 66110269 -86426990 - B2_Mm2 SINE B2 0 195 2 3 1089 195 42 0 0 chr5 66110271 66110295 -86426964 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1089 516 134 196 0 chr5 66110295 66110392 -86426867 - PB1D9 SINE Alu -3 117 2 3 1089 935 41 0 0 chr5 66110412 66110534 -86426725 - B1_Mus2 SINE Alu -1 146 25 3 1089 459 264 190 6 chr5 66110536 66110715 -86426544 - B3 SINE B2 -4 212 1 3 1089 256 290 14 0 chr5 66110869 66110938 -86426321 - RSINE1 SINE B4 -43 122 53 3 1089 362 85 51 0 chr5 66110953 66111012 -86426247 - ORR1A4 LTR MaLR 0 329 268 3 1089 334 90 371 20 chr5 66111001 66111106 -86426153 - B2_Mm2 SINE B2 -7 188 47 3 1089 491 85 158 0 chr5 66111142 66111224 -86426035 - B2_Mm1a SINE B2 -22 171 77 3 1089 396 198 12 0 chr5 66111213 66111294 -86425965 - ORR1A4 LTR MaLR -244 85 4 3 1089 308 182 45 0 chr5 66111343 66111409 -86425850 - ID_B1 SINE B4 0 224 156 3 1089 433 327 0 6 chr5 66111437 66111597 -86425662 - MuRRS4-int LTR ERV1 -242 4821 4663 3 1089 184 254 136 0 chr5 66111997 66112056 -86425203 + L4 LINE RTE 1801 1867 -162 3 1089 362 355 6 6 chr5 66112122 66112292 -86424967 - MMERGLN-int LTR ERV1 -2030 5526 5357 3 1089 1863 244 66 19 chr5 66112403 66112871 -86424388 - MuRRS4-int LTR ERV1 -1043 4020 3531 3 1089 697 309 77 36 chr5 66113164 66113580 -86423679 - MuLV-int LTR ERV1 -3156 4450 4018 3 1089 1214 277 121 82 chr5 66113579 66114565 -86422694 - MuRRS4-int LTR ERV1 -5210 2568 1545 3 1089 216 0 0 0 chr5 66114681 66114705 -86422554 + (TGGGGG)n Simple_repeat Simple_repeat 2 25 0 3 1089 325 100 20 0 chr5 66115383 66115433 -86421826 + B1_Mur4 SINE Alu 53 103 -47 3 1089 431 247 0 0 chr5 66115433 66115514 -86421745 + ID4 SINE ID 1 81 -2 3 1089 21 57 0 0 chr5 66115650 66115685 -86421574 + GC_rich Low_complexity Low_complexity 1 35 0 3 1089 300 325 70 23 chr5 66115850 66115979 -86421280 + ERVL-B4-int LTR ERVL 572 706 -5008 3 1089 890 272 70 60 chr5 66116109 66116500 -86420759 + ERVL-B4-int LTR ERVL 723 1157 -4600 3 1089 889 223 66 0 chr5 66116856 66117053 -86420206 + B3 SINE B2 1 210 -6 3 1089 396 333 129 22 chr5 66117075 66117253 -86420006 - B3A SINE B2 -1 197 1 3 1089 635 220 61 0 chr5 66117275 66117294 -86419965 - B1_Mur1 SINE Alu -7 142 124 3 1089 336 48 0 0 chr5 66117294 66117336 -86419923 + (CATATA)n Simple_repeat Simple_repeat 4 45 0 3 1089 635 220 61 0 chr5 66117336 66117448 -86419811 - B1_Mur1 SINE Alu -26 123 4 3 1089 1043 184 45 12 chr5 66117475 66117690 -86419569 - MTC LTR MaLR -1 420 181 3 1089 1251 41 7 0 chr5 66117691 66117838 -86419421 - B1_Mus1 SINE Alu 0 148 1 3 1089 1424 85 11 0 chr5 66117849 66118037 -86419222 - B2_Mm1t SINE B2 -2 191 2 3 1089 883 253 16 0 chr5 66118037 66118223 -86419036 - MTC LTR MaLR -183 236 48 3 1089 1029 117 0 0 chr5 66118248 66118385 -86418874 - B1_Mus2 SINE Alu -10 137 1 3 1089 390 238 0 0 chr5 66118391 66118475 -86418784 - B4A SINE B4 -207 85 2 3 1089 840 20 0 0 chr5 66118489 66118587 -86418672 + (TTC)n Simple_repeat Simple_repeat 2 99 0 3 1089 1376 115 16 0 chr5 66118605 66118797 -86418462 - B2_Mm2 SINE B2 0 195 1 3 1089 489 34 0 0 chr5 66118798 66118857 -86418402 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 3 1089 1198 48 14 0 chr5 66118858 66119003 -86418256 - B1_Mus2 SINE Alu 0 147 1 3 1089 748 185 59 0 chr5 66119281 66119416 -86417843 + B1_Mur2 SINE Alu 1 143 -6 3 1089 461 67 0 0 chr5 66119627 66119687 -86417572 - B1_Mus1 SINE Alu -88 60 1 3 1089 972 212 74 0 chr5 66119711 66119900 -86417359 - B3 SINE B2 -5 211 9 3 1089 318 316 41 0 chr5 66120199 66120297 -86416962 + RSINE1 SINE B4 3 104 -61 3 1089 573 121 0 0 chr5 66120370 66120453 -86416806 + RLTR23 LTR ERV1 8 90 -340 3 1089 1070 68 0 0 chr5 66120635 66120768 -86416491 + B1_Mus2 SINE Alu 2 134 -13 3 1089 431 254 113 70 chr5 66120798 66120984 -86416275 + RLTR23 LTR ERV1 237 430 0 3 1089 701 257 54 10 chr5 66121018 66121222 -86416037 + ID_B1 SINE B4 5 217 -7 3 1089 27 0 0 0 chr5 66121224 66121251 -86416008 + AT_rich Low_complexity Low_complexity 1 27 0 3 1089 1546 47 11 0 chr5 66121274 66121464 -86415795 - B2_Mm1t SINE B2 -1 192 1 3 1089 352 138 13 37 chr5 66121464 66121575 -86415684 - B2_Mm2 SINE B2 -2 193 47 3 1089 853 108 162 0 chr5 66121646 66121794 -86415465 - B2_Mm1t SINE B2 -20 173 2 3 1089 1039 77 0 13 chr5 66121867 66122024 -86415235 + (TG)n Simple_repeat Simple_repeat 1 155 0 3 1089 1241 236 100 46 chr5 66122175 66122213 -86415046 - MTD LTR MaLR -8 411 374 3 1089 551 230 0 98 chr5 66122213 66122367 -86414892 + B1_Mur2 SINE Alu 1 140 -9 3 1089 276 30 0 0 chr5 66122367 66122400 -86414859 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1089 1241 236 100 46 chr5 66122409 66122760 -86414499 - MTD LTR MaLR -46 373 1 3 1089 515 251 25 94 chr5 66123227 66123429 -86413830 + ERVL-B4-int LTR ERVL 1297 1484 -4230 3 1089 226 0 29 29 chr5 66123509 66123544 -86413715 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3 1089 601 306 93 39 chr5 66123549 66123913 -86413346 + L1MA4A LINE L1 5476 5859 -444 3 1089 661 215 46 8 chr5 66123934 66124065 -86413194 - B1_Mus2 SINE Alu -1 146 11 4 1089 277 225 24 145 chr5 66123994 66124077 -86413182 - MT2B LTR ERVL -361 240 168 4 1089 293 68 0 22 chr5 66124085 66124130 -86413129 + (TCC)n Simple_repeat Simple_repeat 2 45 0 4 1089 521 245 19 0 chr5 66124159 66124265 -86412994 - PB1D10 SINE Alu -1 116 9 4 1089 304 368 96 32 chr5 66124394 66124582 -86412677 + Arthur1 DNA Tip100 204 403 -3544 4 1089 522 0 0 0 chr5 66124752 66124810 -86412449 + (TTC)n Simple_repeat Simple_repeat 2 59 0 4 1089 637 164 148 0 chr5 66124819 66124947 -86412312 - B1_Mur2 SINE Alu -2 147 1 4 1089 387 0 0 0 chr5 66124968 66125011 -86412248 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1089 357 321 59 15 chr5 66125011 66125147 -86412112 - B3A SINE B2 -33 165 24 4 1089 516 280 64 60 chr5 66125213 66125464 -86411795 + Arthur1 DNA Tip100 3421 3672 -275 4 1089 999 155 0 0 chr5 66125465 66125607 -86411652 + B1_Mur4 SINE Alu 1 142 -8 4 1089 405 0 0 0 chr5 66125613 66125658 -86411601 + (CAAAC)n Simple_repeat Simple_repeat 4 48 0 4 1089 623 251 41 87 chr5 66125872 66125936 -86411323 - MTEb LTR MaLR -6 373 311 4 1089 195 42 0 0 chr5 66125936 66125960 -86411299 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 4 1089 1141 66 0 0 chr5 66125962 66126098 -86411161 - B1_Mus1 SINE Alu -12 136 1 4 1089 623 251 41 87 chr5 66126098 66126226 -86411033 - MTEb LTR MaLR -69 310 187 4 1089 4761 163 148 6 chr5 66126226 66127126 -86410133 - RLTR25B LTR ERVK 0 1028 1 4 1089 627 203 0 17 chr5 66127157 66127277 -86409982 - PB1D9 SINE Alu -1 119 2 4 1089 584 248 55 67 chr5 66127366 66127530 -86409729 + RSINE1 SINE B4 4 165 0 4 1089 629 303 70 28 chr5 66127567 66127781 -86409478 + ID_B1 SINE B4 2 224 0 4 1089 1284 75 6 6 chr5 66127788 66127962 -86409297 + B2_Mm2 SINE B2 1 174 -21 4 1089 1291 91 11 0 chr5 66127962 66128138 -86409121 + B2_Mm1t SINE B2 1 178 -15 4 1089 305 89 0 69 chr5 66128173 66128245 -86409014 + B2_Mm1a SINE B2 127 193 0 4 1089 5848 52 17 7 chr5 66128534 66129283 -86407976 - RLTR13B3 LTR ERVK -163 766 10 4 1089 484 223 41 0 chr5 66129430 66129551 -86407708 + L1MD2 LINE L1 5819 5944 -415 4 1089 425 341 0 8 chr5 66129596 66129726 -86407533 - RSINE1 SINE B4 -35 130 2 4 1089 872 281 23 46 chr5 66129891 66130152 -86407107 - MTEa LTR MaLR -1 378 124 4 1089 301 289 172 59 chr5 66130520 66130638 -86406621 + MER89 LTR ERV1 184 314 -245 4 1089 2236 139 71 34 chr5 66130638 66131018 -86406241 + ORR1B1 LTR MaLR 1 394 0 4 1089 301 289 172 59 chr5 66131018 66131068 -86406191 + MER89 LTR ERV1 315 371 -188 4 1089 563 67 13 0 chr5 66131104 66131179 -86406080 - B1_Mus2 SINE Alu -1 146 71 4 1089 25 31 0 0 chr5 66131189 66131221 -86406038 + AT_rich Low_complexity Low_complexity 1 32 0 4 1089 904 89 0 8 chr5 66131235 66131354 -86405905 + B2_Mm1t SINE B2 40 158 -35 4 1089 468 0 0 0 chr5 66131354 66131406 -86405853 + (TAA)n Simple_repeat Simple_repeat 3 54 0 4 1089 450 82 319 35 chr5 66131482 66131595 -86405664 + B2_Mm2 SINE B2 47 191 -4 4 1089 1659 276 37 45 chr5 66131598 66132326 -86404933 + L1_Rod LINE L1 3904 4625 -1222 4 1089 802 69 0 0 chr5 66132424 66132526 -86404733 - MusHAL1 LINE L1 -1586 1126 1025 4 1089 225 204 20 0 chr5 66132526 66132575 -86404684 - ID_B1 SINE B4 -52 172 123 4 1089 860 270 32 5 chr5 66132655 66132871 -86404388 - ID_B1 SINE B4 -1 223 2 4 1089 316 381 0 0 chr5 66132887 66132992 -86404267 - B1F1 SINE Alu -15 134 30 4 1089 511 288 16 0 chr5 66133058 66133183 -86404076 + RSINE1 SINE B4 4 130 -35 4 1089 789 93 0 9 chr5 66133240 66133348 -86403911 + B1_Mur1 SINE Alu 43 149 0 4 1089 35 41 0 0 chr5 66133354 66133403 -86403856 + AT_rich Low_complexity Low_complexity 1 49 0 4 1089 1092 79 59 0 chr5 66133559 66133711 -86403548 + B2_Mm2 SINE B2 1 161 -34 4 1089 301 187 147 0 chr5 66133736 66133811 -86403448 - B3 SINE B2 -130 86 1 4 1089 1476 73 5 0 chr5 66134141 66134332 -86402927 - B2_Mm1a SINE B2 0 193 2 4 1089 269 247 68 0 chr5 66134416 66134489 -86402770 + ID4_ SINE ID 4 81 -2 4 1089 540 111 0 0 chr5 66134552 66134633 -86402626 + (CCA)n Simple_repeat Simple_repeat 1 81 0 4 1089 1173 74 0 7 chr5 66134655 66134804 -86402455 - B1_Mus1 SINE Alu 0 148 1 4 1089 1496 64 37 0 chr5 66134804 66134991 -86402268 - B2_Mm2 SINE B2 0 195 1 4 1089 321 274 98 54 chr5 66135041 66135153 -86402106 - PB1D9 SINE Alu -3 146 30 4 1089 3169 151 23 102 chr5 66135164 66135359 -86401900 + MT2B LTR ERVL 1 176 -425 4 1089 1501 68 0 15 chr5 66135359 66135554 -86401705 - B2_Mm1t SINE B2 -1 192 1 4 1089 3169 151 23 102 chr5 66135554 66136002 -86401257 + MT2B LTR ERVL 177 593 -8 4 1089 397 136 0 0 chr5 66136006 66136065 -86401194 + B1F SINE Alu 81 139 -10 4 1089 1260 14 14 0 chr5 66136159 66136304 -86400955 + B1_Mus2 SINE Alu 1 147 0 4 1089 1026 95 0 20 chr5 66136468 66136619 -86400640 + B1_Mus1 SINE Alu 1 148 0 4 1089 696 56 0 0 chr5 66136636 66136725 -86400534 + (GAAA)n Simple_repeat Simple_repeat 1 89 0 4 1089 4052 182 50 53 chr5 66136819 66137419 -86399840 - RMER13B LTR ERVK -50 858 275 4 1089 231 36 0 0 chr5 66137419 66137447 -86399812 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1089 252 0 0 0 chr5 66137447 66137474 -86399785 + (GA)n Simple_repeat Simple_repeat 2 29 0 4 1089 4052 182 50 53 chr5 66137474 66137732 -86399527 - RMER13B LTR ERVK -634 274 3 4 1089 880 241 41 0 chr5 66137860 66138055 -86399204 + ID_B1 SINE B4 2 204 -20 4 1089 629 94 0 0 chr5 66138050 66138135 -86399124 + B1_Mur2 SINE Alu 48 132 -17 4 1089 432 0 0 0 chr5 66138136 66138184 -86399075 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1089 622 295 138 55 chr5 66138514 66138912 -86398347 + LTR73 LTR ERV1 2 432 -140 4 1089 220 318 89 22 chr5 66139101 66139191 -86398068 + PB1D10 SINE Alu 1 96 -21 4 1089 262 254 0 0 chr5 66139193 66139248 -86398011 + ID4 SINE ID 1 55 -28 4 1089 461 261 18 9 chr5 66139526 66139638 -86397621 - B1F SINE Alu 0 149 37 4 1089 1024 242 47 110 chr5 66139770 66140205 -86397054 + RMER17C LTR ERVK 3 484 -422 4 1089 709 164 102 23 chr5 66140231 66140502 -86396757 + ORR1B2 LTR MaLR 1 367 0 4 1089 401 209 16 68 chr5 66140846 66140933 -86396326 + PB1D10 SINE Alu 20 115 -34 4 1089 638 243 69 16 chr5 66140933 66141121 -86396138 + B3A SINE B2 1 198 0 4 1089 401 238 41 51 chr5 66141121 66141151 -86396108 + PB1D10 SINE Alu 108 142 -7 4 1089 548 258 40 0 chr5 66141250 66141374 -86395885 + ID_B1 SINE B4 80 208 -16 4 1089 459 0 0 0 chr5 66141983 66142034 -86395225 + (TTA)n Simple_repeat Simple_repeat 2 52 0 4 1089 852 173 0 0 chr5 66142036 66142169 -86395090 - B1_Mus1 SINE Alu -14 134 2 4 1089 1445 75 5 5 chr5 66142333 66142521 -86394738 + B2_Mm2 SINE B2 1 188 -7 4 1089 234 191 0 0 chr5 66142657 66142704 -86394555 + GA-rich Low_complexity Low_complexity 2 48 0 4 1089 495 242 46 26 chr5 66142768 66142921 -86394338 - ID_B1 SINE B4 -2 222 67 4 1089 1127 72 0 0 chr5 66143079 66143217 -86394042 + B1_Mus2 SINE Alu 1 138 -9 4 1089 324 0 0 0 chr5 66143217 66143253 -86394006 + (CAA)n Simple_repeat Simple_repeat 2 37 0 4 1089 403 304 77 56 chr5 66143253 66143644 -86393615 - HAL1 LINE L1 -1516 991 593 4 1089 209 281 20 59 chr5 66143735 66143837 -86393422 + CT-rich Low_complexity Low_complexity 5 102 0 4 1089 212 279 44 0 chr5 66143866 66143934 -86393325 - PB1D10 SINE Alu -45 72 2 4 1089 676 78 73 147 chr5 66144049 66144199 -86393060 - B1_Mur4 SINE Alu -7 143 5 4 1089 428 163 93 0 chr5 66144250 66144336 -86392923 + B1_Mus1 SINE Alu 33 126 -22 4 1089 504 0 0 0 chr5 66144336 66144392 -86392867 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1089 236 191 0 0 chr5 66144452 66144499 -86392760 - L1_Mur2 LINE L1 -2293 3584 3538 4 1089 475 282 18 14 chr5 66144502 66144630 -86392629 - B1F SINE Alu -22 125 2 4 1089 1160 271 116 24 chr5 66144639 66145141 -86392118 + L1MC4a LINE L1 6640 7187 -695 4 1089 457 248 184 30 chr5 66145451 66145684 -86391575 + L1MC4a LINE L1 7258 7526 -356 4 1089 615 354 82 36 chr5 66145757 66146147 -86391112 + MLT2B3 LTR ERVL 91 498 -56 4 1089 306 0 0 0 chr5 66146196 66146230 -86391029 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1089 1191 43 0 0 chr5 66146230 66146368 -86390891 - B1_Mus1 SINE Alu -10 138 1 4 1089 334 276 152 72 chr5 66146434 66146559 -86390700 - RSINE1 SINE B4 -5 160 26 4 1089 1183 68 0 0 chr5 66146560 66146707 -86390552 + B1_Mus1 SINE Alu 2 148 0 4 1089 550 327 68 36 chr5 66146779 66146942 -86390317 - Tigger5 DNA MER2_type -2177 229 56 4 1089 1093 88 103 17 chr5 66146942 66147116 -86390143 - B2_Mm2 SINE B2 -6 189 1 4 1089 550 327 68 36 chr5 66147116 66147171 -86390088 - Tigger5 DNA MER2_type -2351 55 5 4 1089 311 228 51 39 chr5 66147196 66147314 -86389945 + L1MC4a LINE L1 7585 7812 -183 4 1089 244 288 36 36 chr5 66147317 66147400 -86389859 + ORR1E LTR MaLR 2 84 -275 4 1089 759 184 39 30 chr5 66147705 66147888 -86389371 + B3 SINE B2 3 195 0 4 1089 305 276 84 63 chr5 66147980 66148123 -86389136 + L1MC4a LINE L1 7730 7875 -7 4 1089 824 141 67 0 chr5 66148177 66148312 -86388947 + B1_Mus1 SINE Alu 5 148 0 4 1089 3216 35 3 0 chr5 66148863 66149240 -86388019 + L1Md_F2 LINE L1 6202 6579 -3 4 1089 457 239 83 0 chr5 66149512 66149621 -86387638 - ID_B1 SINE B4 -2 222 105 4 1089 3729 116 51 3 chr5 66149911 66150475 -86386784 + MT2B LTR ERVL 1 591 -10 4 1089 265 182 0 52 chr5 66150709 66150767 -86386492 + B1F SINE Alu 95 149 0 4 1089 497 310 58 16 chr5 66150772 66150956 -86386303 + B3A SINE B2 1 193 -5 5 1089 1220 48 0 13 chr5 66150956 66151095 -86386164 + B1_Mus2 SINE Alu 1 139 -8 5 1089 396 0 0 0 chr5 66151095 66151139 -86386120 + (CCAA)n Simple_repeat Simple_repeat 2 45 0 5 1089 641 176 353 0 chr5 66151182 66151250 -86386009 - RLTR20B2 LTR ERVK -112 451 408 5 1089 212 59 29 0 chr5 66151250 66151284 -86385975 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1089 1105 170 79 45 chr5 66151284 66151610 -86385649 - RLTR20B2 LTR ERVK -156 407 1 5 1089 370 36 0 35 chr5 66151660 66151718 -86385541 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1089 220 296 0 18 chr5 66151831 66151886 -86385373 - B4 SINE B4 -200 92 39 5 1089 23 33 0 0 chr5 66154648 66154678 -86382581 + GC_rich Low_complexity Low_complexity 1 30 0 5 1089 23 33 0 0 chr5 66155057 66155087 -86382172 + GC_rich Low_complexity Low_complexity 1 30 0 5 1089 22 0 0 0 chr5 66155143 66155165 -86382094 + GC_rich Low_complexity Low_complexity 1 22 0 5 1089 207 0 0 0 chr5 66155362 66155385 -86381874 + (CCGCG)n Simple_repeat Simple_repeat 1 23 0 5 1089 203 206 31 16 chr5 66155613 66155677 -86381582 + (CGGG)n Simple_repeat Simple_repeat 1 65 0 5 1089 180 0 0 0 chr5 66156733 66156753 -86380506 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5 1089 385 259 62 0 chr5 66157240 66157352 -86379907 - PB1D9 SINE Alu 0 120 2 5 1089 1154 55 7 0 chr5 66157383 66157528 -86379731 - B1_Mus2 SINE Alu 0 147 2 5 1089 1492 52 0 40 chr5 66157960 66158000 -86379259 - B2_Mm1a SINE B2 0 193 161 5 1089 207 0 0 0 chr5 66158000 66158023 -86379236 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 1089 1492 52 0 40 chr5 66158023 66158182 -86379077 - B2_Mm1a SINE B2 -33 160 2 5 1089 1344 55 0 0 chr5 66158228 66158392 -86378867 - B2_Mm2 SINE B2 -31 164 1 5 1089 1439 43 49 0 chr5 66158401 66158585 -86378674 - B2_Mm1a SINE B2 0 193 1 5 1089 713 159 71 14 chr5 66158638 66158778 -86378481 - B1_Mur2 SINE Alu 0 149 2 5 1089 237 278 103 73 chr5 66158809 66158945 -86378314 - MER104 DNA Tc2 -15 166 27 5 1089 477 258 44 66 chr5 66159644 66159781 -86377478 + B1F SINE Alu 9 142 -7 5 1089 1076 238 0 0 chr5 66159790 66159992 -86377267 + B3 SINE B2 1 202 -14 5 1089 364 249 12 2 chr5 66160064 66160167 -86377092 - B1_Mur4 SINE Alu -39 110 9 5 1089 234 317 0 0 chr5 66160114 66160174 -86377085 - ID_B1 SINE B4 -83 141 82 5 1089 424 275 13 90 chr5 66160286 66160442 -86376817 + B1F2 SINE Alu 5 148 -1 5 1089 1448 130 13 18 chr5 66160710 66160937 -86376322 - URR1A DNA MER1_type 0 226 1 5 1089 1469 82 0 20 chr5 66161115 66161313 -86375946 - B2_Mm2 SINE B2 0 195 2 5 1089 182 299 85 59 chr5 66163000 66163153 -86374106 - L2 LINE L2 -431 2988 2832 5 1089 598 298 19 0 chr5 66163604 66163765 -86373494 + RSINE1 SINE B4 2 165 0 5 1089 262 302 182 36 chr5 66164076 66164186 -86373073 + ID_B1 SINE B4 85 210 -14 5 1089 576 247 15 169 chr5 66164395 66164442 -86372817 - Tigger7 DNA MER2_type -89 2402 2361 5 1089 1351 35 116 0 chr5 66164442 66164614 -86372645 + B2_Mm2 SINE B2 1 192 -3 5 1089 576 247 15 169 chr5 66164614 66164744 -86372515 - Tigger7 DNA MER2_type -131 2360 2260 5 1089 963 177 126 0 chr5 66164744 66164919 -86372340 + B3 SINE B2 1 197 -19 5 1089 576 247 15 169 chr5 66164919 66165013 -86372246 - Tigger7 DNA MER2_type -232 2259 2172 5 1089 261 0 0 0 chr5 66165095 66165124 -86372135 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1089 258 143 0 0 chr5 66165131 66165173 -86372086 - PB1D10 SINE Alu -9 108 67 5 1089 1567 43 16 0 chr5 66165173 66165361 -86371898 - B2_Mm2 SINE B2 -4 191 1 5 1089 231 259 0 73 chr5 66165361 66165403 -86371856 - PB1 SINE Alu -50 100 64 5 1089 1113 62 14 0 chr5 66165714 66165859 -86371400 - B1_Mus1 SINE Alu 0 148 2 5 1089 816 254 20 15 chr5 66165919 66166115 -86371144 + B3 SINE B2 3 199 -17 5 1089 632 203 66 29 chr5 66166620 66166757 -86370502 + B1_Mur2 SINE Alu 2 143 -6 5 1089 604 148 167 32 chr5 66167134 66167260 -86369999 - B1_Mur3 SINE Alu -2 147 5 5 1089 1801 184 118 3 chr5 66167395 66167743 -86369516 - ORR1B1 LTR MaLR -2 392 5 5 1089 537 239 23 142 chr5 66167809 66168083 -86369176 - RMER4B LTR ERVK 0 611 330 5 1089 453 206 18 27 chr5 66168142 66168252 -86369007 - RMER4B LTR ERVK -460 125 17 5 1089 431 292 77 12 chr5 66168273 66168443 -86368816 + U17 snRNA snRNA 24 204 -3 5 1089 276 256 54 23 chr5 66168885 66168991 -86368268 - PB1D10 SINE Alu -3 114 13 5 1089 1586 54 21 0 chr5 66169029 66169215 -86368044 - B2_Mm1a SINE B2 -3 190 1 5 1089 243 88 0 0 chr5 66169283 66169317 -86367942 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1089 28 0 0 0 chr5 66169317 66169345 -86367914 + AT_rich Low_complexity Low_complexity 1 28 0 5 1089 740 190 14 14 chr5 66169347 66169486 -86367773 - B1_Mur2 SINE Alu -5 144 6 5 1089 438 159 0 0 chr5 66169488 66169557 -86367702 - ID_B1 SINE B4 -73 151 83 5 1089 765 246 17 17 chr5 66169534 66169708 -86367551 - ID_B1 SINE B4 -50 174 1 5 1089 248 330 24 0 chr5 66169746 66169822 -86367437 + B1_Mur1 SINE Alu 38 117 -32 5 1089 21 95 0 0 chr5 66169850 66169913 -86367346 + AT_rich Low_complexity Low_complexity 1 63 0 5 1089 1225 48 7 7 chr5 66170282 66170429 -86366830 - B1_Mus1 SINE Alu 0 148 2 5 1089 767 195 94 0 chr5 66170429 66170578 -86366681 + B3 SINE B2 54 216 0 5 1089 751 226 127 65 chr5 66170589 66170939 -86366320 + L1MB7 LINE L1 5693 6087 -97 5 1089 2713 112 61 46 chr5 66170939 66171398 -86365861 - RMER4A LTR ERVK 0 466 1 5 1089 751 218 119 68 chr5 66171398 66171459 -86365800 + L1MB7 LINE L1 6088 6141 -43 5 1089 655 220 162 9 chr5 66171579 66171768 -86365491 + B3A SINE B2 1 195 0 5 1089 1387 161 28 0 chr5 66171784 66172002 -86365257 + URR1B DNA MER1_type 2 225 0 5 1089 209 260 125 38 chr5 66172081 66172161 -86365098 - L2 LINE L2 -698 2721 2635 5 1089 769 180 35 21 chr5 66172177 66172319 -86364940 - B1_Mur2 SINE Alu -5 144 1 5 1089 303 295 102 62 chr5 66172905 66173082 -86364177 - L2 LINE L2 -1034 2385 2202 5 1089 230 295 30 59 chr5 66173337 66173438 -86363821 + RSINE1 SINE B4 45 142 -23 5 1089 234 296 192 43 chr5 66173655 66174004 -86363255 - L1M5 LINE L1 -1971 4175 3775 5 1089 231 284 12 58 chr5 66174060 66174146 -86363113 + C573_MM Other Other 78 159 -363 5 1089 293 85 442 96 chr5 66174445 66174549 -86362710 + B1_Mus1 SINE Alu 5 144 -4 5 1089 646 160 9 0 chr5 66174562 66174668 -86362591 + B2_Mm1t SINE B2 2 108 -85 5 1089 394 260 68 45 chr5 66174829 66175006 -86362253 - B4A SINE B4 -111 181 1 5 1089 732 257 178 30 chr5 66175006 66175507 -86361752 - L1MD LINE L1 -3238 2908 2334 5 1089 323 169 56 14 chr5 66175515 66175587 -86361672 + MER3 DNA MER1_type 135 209 0 5 1089 216 299 0 29 chr5 66175959 66176028 -86361231 - L2 LINE L2 -958 2461 2395 5 1089 652 199 223 37 chr5 66176165 66176353 -86360906 + ID_B1 SINE B4 1 223 -1 5 1089 383 318 267 19 chr5 66176448 66176965 -86360294 - L2 LINE L2 -353 3066 2422 5 1089 24 53 0 0 chr5 66177305 66177343 -86359916 + AT_rich Low_complexity Low_complexity 1 38 0 5 1089 1039 46 107 0 chr5 66178636 66178767 -86358492 + B1_Mus2 SINE Alu 1 145 -2 5 1089 22 70 0 0 chr5 66178930 66178973 -86358286 + AT_rich Low_complexity Low_complexity 1 43 0 5 1089 472 291 31 66 chr5 66179307 66179535 -86357724 - MIRb SINE MIR -27 241 22 5 1089 241 317 12 24 chr5 66179623 66179707 -86357552 - ID4 SINE ID 0 83 1 5 1089 206 312 192 6 chr5 66179735 66179912 -86357347 + MIRb SINE MIR 13 222 -46 5 1089 774 32 0 0 chr5 66180086 66180179 -86357080 + (TTTCC)n Simple_repeat Simple_repeat 4 96 0 5 1089 300 288 120 21 chr5 66180207 66180349 -86356910 - HAL1-3A_ME LINE L1 -419 2439 2284 5 1089 812 176 6 57 chr5 66180389 66180546 -86356713 - B1_Mur1 SINE Alu 0 149 1 5 1089 30 27 0 0 chr5 66180678 66180715 -86356544 + AT_rich Low_complexity Low_complexity 1 37 0 5 1089 261 0 0 0 chr5 66181138 66181167 -86356092 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1089 318 148 0 0 chr5 66181167 66181221 -86356038 + (CATA)n Simple_repeat Simple_repeat 2 55 0 5 1089 180 77 0 0 chr5 66181221 66181247 -86356012 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1089 597 168 28 9 chr5 66182880 66182988 -86354271 + PB1D9 SINE Alu 1 110 -10 5 1089 322 153 337 0 chr5 66183084 66183182 -86354077 - B1_Mur2 SINE Alu 0 149 19 5 1089 658 294 23 36 chr5 66183460 66183679 -86353580 - ID_B1 SINE B4 -8 216 1 5 1089 282 257 108 54 chr5 66183982 66184093 -86353166 - B4A SINE B4 -150 142 26 5 1089 568 279 29 0 chr5 66184185 66184321 -86352938 + ID_B1 SINE B4 83 222 -2 5 1089 558 148 46 19 chr5 66184836 66184961 -86352298 + B1_Mus2 SINE Alu 2 130 -20 5 1089 592 269 110 76 chr5 66185012 66185050 -86352209 + B4A SINE B4 44 141 -151 5 1089 607 296 14 21 chr5 66185050 66185195 -86352064 + B1_Mur2 SINE Alu 1 144 -5 5 1089 592 269 110 76 chr5 66185195 66185249 -86352010 + B4A SINE B4 142 288 -4 5 1089 394 129 19 19 chr5 66185252 66185355 -86351904 + (CAGAGA)n Simple_repeat Simple_repeat 2 104 0 5 1089 315 0 0 0 chr5 66185529 66185564 -86351695 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 5 1089 204 280 0 0 chr5 66186062 66186112 -86351147 + CT-rich Low_complexity Low_complexity 4 53 0 5 1089 441 0 0 0 chr5 66186270 66186319 -86350940 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1089 437 218 110 24 chr5 66186959 66187086 -86350173 + B1_Mur3 SINE Alu 1 138 -11 5 1089 722 226 43 33 chr5 66187275 66187485 -86349774 - B3 SINE B2 -4 212 1 5 1089 474 209 11 34 chr5 66187580 66187613 -86349646 + C-rich Low_complexity Low_complexity 142 174 0 6 1089 1032 22 0 91 chr5 66187613 66187810 -86349449 + (TTCCC)n Simple_repeat Simple_repeat 1 179 0 6 1089 474 209 11 34 chr5 66187810 66187939 -86349320 + C-rich Low_complexity Low_complexity 15 141 0 6 1089 593 61 12 0 chr5 66187939 66188021 -86349238 + (TTTTC)n Simple_repeat Simple_repeat 3 85 0 6 1089 474 209 11 34 chr5 66188021 66188035 -86349224 + C-rich Low_complexity Low_complexity 1 14 0 6 1089 390 291 0 25 chr5 66188060 66188141 -86349118 - PB1D7 SINE Alu -13 107 29 6 1089 248 352 62 52 chr5 66188070 66188166 -86349093 - ID_B1 SINE B4 -49 175 79 6 1089 382 179 24 12 chr5 66188800 66188885 -86348374 - RMER10A LTR ERVL -13 429 344 6 1089 369 300 81 62 chr5 66189617 66189777 -86347482 - RSINE1 SINE B4 0 165 3 6 1089 24 0 0 0 chr5 66189806 66189830 -86347429 + AT_rich Low_complexity Low_complexity 1 24 0 6 1089 416 87 316 97 chr5 66189992 66190106 -86347153 - B2_Mm2 SINE B2 -10 185 47 6 1089 1392 91 11 0 chr5 66190174 66190350 -86346909 - B2_Mm1t SINE B2 -14 179 2 6 1089 675 218 140 52 chr5 66190475 66190746 -86346513 - L1MB7 LINE L1 -79 6105 5811 6 136 379 304 190 48 chr5 66191062 66191415 -86345844 - L1MEd LINE L1 -2936 3210 2808 6 1090 501 284 44 19 chr5 66191611 66191769 -86345490 + RSINE1 SINE B4 2 163 -2 6 1090 271 305 50 18 chr5 66192048 66192244 -86345015 - L1MEd LINE L1 -3724 2442 2232 6 1090 438 36 0 0 chr5 66192277 66192333 -86344926 + (TC)n Simple_repeat Simple_repeat 2 57 0 6 1090 311 244 67 0 chr5 66192362 66192452 -86344807 - PB1D10 SINE Alu -9 108 13 6 1090 240 262 22 101 chr5 66192397 66192486 -86344773 + MLT2B2 LTR ERVL 320 401 -161 6 1090 1069 125 0 7 chr5 66192584 66192729 -86344530 - B1_Mur1 SINE Alu -5 144 1 6 1090 300 256 101 64 chr5 66192814 66193002 -86344257 - L1MEd LINE L1 -4140 2026 1832 6 1090 384 257 103 55 chr5 66193169 66193607 -86343652 - L1MEd LINE L1 -4678 1564 1060 6 1090 502 213 70 53 chr5 66194269 66194383 -86342876 + PB1D10 SINE Alu 2 117 0 6 1090 360 244 13 0 chr5 66194493 66194571 -86342688 + ID4_ SINE ID 4 82 -1 6 1090 1270 68 0 0 chr5 66194868 66195015 -86342244 - B1_Mm SINE Alu 0 147 1 6 1090 181 83 0 53 chr5 66195285 66195323 -86341936 + (TTTTTA)n Simple_repeat Simple_repeat 4 39 0 6 1090 291 355 0 0 chr5 66195377 66195390 -86341869 - RSINE1 SINE B4 -69 96 4 6 1090 628 75 0 0 chr5 66195390 66195470 -86341789 - B2_Mm2 SINE B2 -113 82 3 6 1090 1229 89 0 0 chr5 66195473 66195619 -86341640 - B1_Mus2 SINE Alu 0 147 2 6 1090 297 75 0 0 chr5 66195915 66195955 -86341304 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 6 1090 787 206 27 0 chr5 66195955 66196101 -86341158 - B1_Mur4 SINE Alu 0 150 1 6 1090 1561 58 11 0 chr5 66196132 66196320 -86340939 - B2_Mm1t SINE B2 -2 191 2 6 1090 1092 132 102 0 chr5 66196725 66196922 -86340337 - URR1B DNA MER1_type -2 223 7 6 1090 255 288 0 6 chr5 66197182 66197255 -86340004 - ID2 SINE ID -67 85 15 6 1090 228 135 0 0 chr5 66200614 66200651 -86336608 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 6 1090 762 170 281 12 chr5 66200676 66200843 -86336416 - B3 SINE B2 0 216 5 6 1090 367 254 161 51 chr5 66201160 66201297 -86335962 - RSINE1 SINE B4 -1 164 13 6 1090 387 0 0 0 chr5 66201309 66201352 -86335907 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1090 546 254 17 26 chr5 66201354 66201471 -86335788 - B1_Mur4 SINE Alu -33 117 2 6 1090 1407 83 50 0 chr5 66201480 66201661 -86335598 - B2_Mm2 SINE B2 -4 191 2 6 1090 472 185 17 100 chr5 66201676 66201796 -86335463 + MT2B LTR ERVL 155 264 -337 6 1090 1097 43 7 0 chr5 66201691 66201830 -86335429 + B1_Mm SINE Alu 8 147 0 6 1090 197 33 33 0 chr5 66201872 66201902 -86335357 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1090 244 270 179 51 chr5 66201929 66202007 -86335252 - PB1D10 SINE Alu -29 88 1 6 1090 227 73 0 47 chr5 66202019 66202062 -86335197 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 6 1090 189 0 0 0 chr5 66202959 66202980 -86334279 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 6 1090 836 153 44 0 chr5 66203644 66203781 -86333478 - B1_Mur4 SINE Alu -7 143 1 6 1090 226 237 26 0 chr5 66204412 66204488 -86332771 + CT-rich Low_complexity Low_complexity 3 80 0 6 1090 807 181 65 0 chr5 66204490 66204628 -86332631 - B1_Mus1 SINE Alu -1 147 1 6 1090 261 304 25 12 chr5 66204687 66204767 -86332492 + B4A SINE B4 5 85 -207 6 1090 373 312 102 35 chr5 66205297 66205523 -86331736 + L4 LINE RTE 1649 1889 -140 6 1090 25 0 0 0 chr5 66206283 66206308 -86330951 + AT_rich Low_complexity Low_complexity 1 25 0 6 1090 822 301 0 0 chr5 66206683 66206866 -86330393 - ID_B1 SINE B4 -25 199 17 6 1090 760 148 9 0 chr5 66206988 66207103 -86330156 - B1_Mur3 SINE Alu -32 117 2 6 1090 300 53 0 0 chr5 66207130 66207168 -86330091 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 6 1090 499 299 34 0 chr5 66207168 66207315 -86329944 - RSINE1 SINE B4 -11 154 3 6 1090 982 218 20 10 chr5 66207358 66207553 -86329706 + B3 SINE B2 20 216 0 6 1090 389 167 0 13 chr5 66207580 66207659 -86329600 + CT-rich Low_complexity Low_complexity 1 78 0 6 1090 245 301 9 61 chr5 66207664 66207745 -86329514 - ID4 SINE ID -1 82 3 6 1090 553 233 8 33 chr5 66207747 66207867 -86329392 - PB1D10 SINE Alu 0 117 1 6 1090 457 224 56 9 chr5 66207958 66208066 -86329193 + B1_Mur3 SINE Alu 32 144 -5 6 1090 764 196 141 12 chr5 66208157 66208327 -86328932 - B3 SINE B2 -1 215 24 6 1090 564 125 37 37 chr5 66208799 66208907 -86328352 - B1_Mur3 SINE Alu 0 149 42 6 1090 948 241 29 15 chr5 66209131 66209337 -86327922 - B3 SINE B2 -7 209 1 6 1090 810 203 42 7 chr5 66209345 66209489 -86327770 - B1_Mur1 SINE Alu 0 149 1 6 1090 707 184 257 0 chr5 66209871 66210050 -86327209 - URR1B DNA MER1_type 0 225 1 6 1090 241 289 179 16 chr5 66210534 66210657 -86326602 - B1F2 SINE Alu -1 148 6 6 1090 876 90 1 36 chr5 66210801 66210943 -86326316 + B1_Mus1 SINE Alu 6 139 -11 6 1090 587 138 33 92 chr5 66211119 66211239 -86326020 - B1_Mus2 SINE Alu -11 136 24 6 1090 269 311 8 88 chr5 66211269 66211406 -86325853 - B1F2 SINE Alu -25 124 1 6 1090 306 164 0 0 chr5 66211968 66212023 -86325236 + C-rich Low_complexity Low_complexity 4 58 0 6 1090 302 346 9 9 chr5 66212037 66212142 -86325117 - PB1D10 SINE Alu -10 107 3 6 1090 612 316 53 49 chr5 66212383 66212629 -86324630 - B4A SINE B4 0 292 46 6 1090 385 209 143 0 chr5 66213269 66213360 -86323899 - PB1D9 SINE Alu -13 107 4 6 1090 267 31 0 0 chr5 66213361 66213393 -86323866 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1090 641 224 174 5 chr5 66213468 66213652 -86323607 - B3 SINE B2 0 216 2 6 1090 342 280 117 14 chr5 66213699 66213834 -86323425 - RMER15 LTR ERVL 0 575 426 6 1090 1126 203 89 8 chr5 66213834 66214092 -86323167 + ORR1D1 LTR MaLR 1 279 -95 6 1090 498 162 60 0 chr5 66214289 66214406 -86322853 - L1MA9 LINE L1 -344 5968 5845 6 1090 615 27 0 0 chr5 66214406 66214479 -86322780 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 6 1090 306 0 0 0 chr5 66214480 66214514 -86322745 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1090 425 218 87 24 chr5 66214818 66214966 -86322293 - B1F SINE Alu -29 120 1 6 1090 273 290 81 11 chr5 66215235 66215420 -86321839 + L1MC5 LINE L1 7310 7507 -454 6 1090 556 252 16 0 chr5 66215443 66215566 -86321693 + B1_Mus2 SINE Alu 2 126 -21 6 1090 343 310 17 17 chr5 66215907 66216025 -86321234 - MIR SINE MIR -93 169 52 6 1090 225 289 67 0 chr5 66216194 66216298 -86320961 - B1F SINE Alu 0 149 39 6 1090 28 29 0 0 chr5 66216822 66216857 -86320402 + AT_rich Low_complexity Low_complexity 1 35 0 6 1090 1682 47 5 0 chr5 66216978 66217170 -86320089 + B2_Mm1t SINE B2 1 193 0 6 1090 23 0 0 0 chr5 66217800 66217823 -86319436 + AT_rich Low_complexity Low_complexity 1 23 0 6 1090 1080 79 58 0 chr5 66218152 66218291 -86318968 - B1_Mus2 SINE Alu 0 147 1 6 1090 412 325 25 42 chr5 66219725 66219844 -86317415 - PB1D10 SINE Alu -32 117 1 6 1090 199 152 0 0 chr5 66221666 66221699 -86315560 - L2b LINE L2 -4 3371 3339 6 1090 221 280 168 10 chr5 66221845 66221946 -86315313 - MIRc SINE MIR -118 150 34 6 1090 592 138 53 0 chr5 66221998 66222092 -86315167 + B1_Mur2 SINE Alu 45 143 -6 6 1090 197 65 0 31 chr5 66222099 66222131 -86315128 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 6 1090 240 394 45 10 chr5 66222376 66222576 -86314683 - MLT1J LTR MaLR -262 250 44 6 1090 888 150 7 13 chr5 66224469 66224654 -86312605 - B2_Mm2 SINE B2 -2 191 2 6 1090 225 0 0 0 chr5 66225253 66225278 -86311981 + (TTTCC)n Simple_repeat Simple_repeat 1 25 0 6 1090 930 147 0 0 chr5 66225280 66225437 -86311822 + (TC)n Simple_repeat Simple_repeat 2 158 0 6 1090 406 178 154 11 chr5 66225989 66226080 -86311179 - MTE2b LTR MaLR -7 372 269 6 1090 324 0 0 0 chr5 66226080 66226116 -86311143 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1090 5955 64 2 1 chr5 66226116 66226909 -86310350 + RLTR13B4 LTR ERVK 10 803 0 6 1090 368 254 104 9 chr5 66226910 66227025 -86310234 - MTE2b LTR MaLR -249 130 5 6 1090 324 70 0 0 chr5 66227950 66227993 -86309266 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1090 283 244 244 0 chr5 66228003 66228130 -86309129 - B4A SINE B4 -31 261 104 7 1090 195 100 0 0 chr5 66228197 66228227 -86309032 + (CAA)n Simple_repeat Simple_repeat 1 30 0 7 1090 2207 64 37 0 chr5 66228227 66228524 -86308735 + L1_Mus3 LINE L1 6325 6632 -6 7 1090 568 245 0 176 chr5 66229682 66229738 -86307521 + RSINE1 SINE B4 5 51 -114 7 1090 2082 114 15 41 chr5 66229738 66230076 -86307183 - ORR1A4 LTR MaLR 0 329 1 7 1090 568 245 0 176 chr5 66230076 66230207 -86307052 + RSINE1 SINE B4 52 159 -6 7 1090 633 186 164 23 chr5 66230556 66230727 -86306532 + B2_Mm2 SINE B2 1 195 0 7 1090 324 120 0 0 chr5 66230727 66230777 -86306482 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1090 308 268 14 84 chr5 66230797 66230921 -86306338 - RSINE1 SINE B4 -170 122 1 7 1090 585 285 154 19 chr5 66231204 66231475 -86305784 + B4A SINE B4 3 292 0 7 1090 237 200 0 77 chr5 66231492 66231557 -86305702 + L1MB5 LINE L1 5874 5933 -241 7 1090 736 266 28 22 chr5 66231565 66231746 -86305513 + B3A SINE B2 1 182 -16 7 1090 21 57 0 0 chr5 66231761 66231796 -86305463 + AT_rich Low_complexity Low_complexity 1 35 0 7 1090 576 0 0 0 chr5 66231822 66231886 -86305373 + (TC)n Simple_repeat Simple_repeat 1 64 0 7 1090 1396 127 4 17 chr5 66231925 66232157 -86305102 - MTC LTR MaLR -8 413 185 7 1090 246 294 29 139 chr5 66233115 66233360 -86303899 - RLTR25B LTR ERVK -796 232 15 7 1090 997 122 29 6 chr5 66233377 66233550 -86303709 - MTB LTR MaLR -223 177 1 7 1090 483 208 122 76 chr5 66233606 66233778 -86303481 + B3A SINE B2 3 182 -16 7 1090 459 0 0 0 chr5 66234010 66234061 -86303198 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1090 945 169 196 0 chr5 66234107 66234296 -86302963 + URR1A DNA MER1_type 1 226 0 7 1090 254 238 139 25 chr5 66234679 66234787 -86302472 - L1MA5 LINE L1 0 6300 6183 7 1090 428 99 14 0 chr5 66235233 66235304 -86301955 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1090 231 191 43 0 chr5 66235432 66235479 -86301780 + (CATA)n Simple_repeat Simple_repeat 4 52 0 7 1090 1314 86 11 0 chr5 66235557 66235732 -86301527 + B2_Mm1t SINE B2 2 178 -15 7 1090 332 74 365 0 chr5 66235806 66235913 -86301346 + B2_Mm2 SINE B2 47 192 -3 7 1090 541 186 16 81 chr5 66236027 66236150 -86301109 + B1_Mur2 SINE Alu 3 117 -32 7 1090 380 248 12 134 chr5 66236457 66236629 -86300630 - MLT1G3 LTR MaLR 0 595 445 7 1090 309 299 35 28 chr5 66236737 66236878 -86300381 + RLTR15 LTR ERVK 150 291 -68 7 1090 185 178 22 0 chr5 66237612 66237657 -86299602 + GA-rich Low_complexity Low_complexity 2 47 0 7 1090 1126 75 0 0 chr5 66237824 66237971 -86299288 - B1_Mus2 SINE Alu 0 147 1 7 1090 968 206 88 0 chr5 66238041 66238245 -86299014 - ID_B1 SINE B4 -2 222 1 7 1090 405 0 0 0 chr5 66238716 66238761 -86298498 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1090 1232 279 81 39 chr5 66238854 66239068 -86298191 + L1MA9 LINE L1 5475 5687 -625 7 1090 261 0 0 0 chr5 66239068 66239097 -86298162 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1090 1232 279 81 39 chr5 66239097 66239416 -86297843 + L1MA9 LINE L1 5688 6029 -283 7 1090 490 286 18 61 chr5 66239656 66239820 -86297439 - RSINE1 SINE B4 0 165 9 7 1090 906 108 16 0 chr5 66239911 66240040 -86297219 - B1_Mur4 SINE Alu -18 132 2 7 1090 360 0 0 0 chr5 66240763 66240803 -86296456 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1090 858 178 55 77 chr5 66240811 66240994 -86296265 - B4 SINE B4 -31 261 83 7 1090 650 196 0 71 chr5 66241001 66241155 -86296104 - B1_Mur2 SINE Alu -1 148 6 7 1090 552 268 20 127 chr5 66241010 66241254 -86296005 - B4 SINE B4 -73 219 2 7 1090 398 268 72 16 chr5 66241630 66241755 -86295504 + B1F SINE Alu 2 133 -16 7 1090 180 0 0 0 chr5 66241766 66241786 -86295473 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1090 210 71 0 0 chr5 66241817 66241845 -86295414 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 7 1090 517 193 0 33 chr5 66242717 66242867 -86294392 + (TA)n Simple_repeat Simple_repeat 1 145 0 7 1090 279 54 0 0 chr5 66242862 66242899 -86294360 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1090 288 70 0 0 chr5 66242901 66242944 -86294315 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1090 268 235 30 186 chr5 66243337 66243359 -86293900 + B4 SINE B4 79 219 -73 7 1090 640 204 0 55 chr5 66243359 66243504 -86293755 + B1_Mur2 SINE Alu 6 142 -7 7 1090 231 189 56 178 chr5 66243519 66243609 -86293650 + PB1 SINE Alu 49 127 0 7 1090 1438 45 39 17 chr5 66243694 66243875 -86293384 - B2_Mm2 SINE B2 -9 186 2 7 1090 283 265 29 0 chr5 66244218 66244286 -86292973 - MLT1J2 LTR MaLR -306 142 73 7 1090 219 36 0 0 chr5 66244512 66244540 -86292719 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1090 393 22 0 0 chr5 66244657 66244703 -86292556 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1090 540 0 0 0 chr5 66244932 66244992 -86292267 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 1090 275 208 0 0 chr5 66245096 66245144 -86292115 + B3 SINE B2 1 48 -168 7 1090 267 268 24 12 chr5 66245409 66245492 -86291767 + MIRb SINE MIR 65 148 -120 7 1090 21 57 0 0 chr5 66246550 66246585 -86290674 + AT_rich Low_complexity Low_complexity 1 35 0 7 1090 396 0 0 0 chr5 66246585 66246629 -86290630 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1090 680 203 6 63 chr5 66246631 66246789 -86290470 - B3A SINE B2 -48 150 2 7 1090 375 216 17 8 chr5 66247184 66247301 -86289958 + GA-rich Low_complexity Low_complexity 1 118 0 7 1090 326 326 0 0 chr5 66247382 66247471 -86289788 - PB1D10 SINE Alu -11 106 18 7 1090 501 17 0 0 chr5 66248394 66248452 -86288807 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1090 402 21 0 0 chr5 66248452 66248499 -86288760 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1090 230 280 26 26 chr5 66248545 66248622 -86288637 + L2a LINE L2 3333 3409 -17 7 1090 1053 44 38 0 chr5 66249508 66249668 -86287591 + (TCC)n Simple_repeat Simple_repeat 1 166 0 7 1090 237 33 0 0 chr5 66249987 66250017 -86287242 + (TTA)n Simple_repeat Simple_repeat 1 30 0 7 1090 218 156 0 43 chr5 66250409 66250456 -86286803 + (TGG)n Simple_repeat Simple_repeat 2 46 0 7 1090 392 97 0 16 chr5 66250926 66250989 -86286270 + (GAAAA)n Simple_repeat Simple_repeat 1 62 0 7 1090 234 81 0 0 chr5 66251376 66251413 -86285846 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1090 468 0 0 0 chr5 66251913 66251965 -86285294 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 1090 180 0 0 0 chr5 66252322 66252342 -86284917 + (C)n Simple_repeat Simple_repeat 1 20 0 7 1090 233 217 0 62 chr5 66252743 66252807 -86284452 - PB1D7 SINE Alu -1 119 60 7 1090 261 274 82 31 chr5 66253008 66253106 -86284153 - B1F SINE Alu -10 139 37 7 1090 599 144 30 15 chr5 66253419 66253553 -86283706 + CT-rich Low_complexity Low_complexity 6 141 0 7 1090 727 65 93 0 chr5 66253553 66253660 -86283599 - B1_Mus2 SINE Alu -14 133 17 7 1090 216 97 0 0 chr5 66253822 66253853 -86283406 + (AGGGGG)n Simple_repeat Simple_repeat 4 34 0 7 1090 288 252 156 71 chr5 66254156 66254202 -86283057 - ID_B1 SINE B4 -20 204 160 7 1090 746 208 21 7 chr5 66254202 66254347 -86282912 - B1_Mur3 SINE Alu 0 149 3 7 1090 288 252 156 71 chr5 66254347 66254441 -86282818 - ID_B1 SINE B4 -65 159 52 7 1090 544 258 66 2 chr5 66255341 66255479 -86281780 - ID_B1 SINE B4 -2 222 81 7 1090 225 345 26 59 chr5 66256676 66256909 -86280350 + MIRb SINE MIR 22 248 -20 7 1090 238 242 48 0 chr5 66258154 66258216 -86279043 - L1M5 LINE L1 -463 5661 5597 7 1090 1110 112 207 5 chr5 66258257 66258445 -86278814 - URR1A DNA MER1_type 0 226 1 7 1090 299 290 75 25 chr5 66259156 66259315 -86277944 + MER63D DNA AcHobo 209 375 -686 7 1090 774 193 263 0 chr5 66259394 66259565 -86277694 + B3 SINE B2 1 216 0 7 1090 624 116 0 0 chr5 66259594 66259689 -86277570 + (GAAA)n Simple_repeat Simple_repeat 3 97 0 7 1090 466 216 26 18 chr5 66260087 66260200 -86277059 + PB1D10 SINE Alu 1 114 -3 7 1090 291 54 0 0 chr5 66260200 66260237 -86277022 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 1090 503 164 496 7 chr5 66260538 66260679 -86276580 + B3 SINE B2 1 210 -6 7 1090 621 96 0 0 chr5 66260738 66260832 -86276427 + (TG)n Simple_repeat Simple_repeat 1 94 0 7 1090 423 0 0 0 chr5 66260832 66260878 -86276381 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 1090 219 226 0 0 chr5 66261066 66261119 -86276140 + (TCTG)n Simple_repeat Simple_repeat 1 53 0 7 1090 242 194 340 20 chr5 66262006 66262106 -86275153 - B1F SINE Alu -14 135 4 7 1090 927 122 181 62 chr5 66262156 66262349 -86274910 - B3 SINE B2 0 216 1 7 1090 23 33 0 0 chr5 66262479 66262509 -86274750 + AT_rich Low_complexity Low_complexity 1 30 0 7 1090 285 167 0 0 chr5 66263071 66263149 -86274110 + (TG)n Simple_repeat Simple_repeat 1 78 0 7 1090 233 200 19 39 chr5 66263159 66263211 -86274048 - ID4_ SINE ID -8 75 25 7 1090 535 327 80 4 chr5 66263858 66264107 -86273152 + Tigger5 DNA MER2_type 2135 2402 -4 7 1090 24 53 0 0 chr5 66265774 66265812 -86271447 + AT_rich Low_complexity Low_complexity 1 38 0 7 1090 487 331 0 22 chr5 66266077 66266259 -86271000 + (TATG)n Simple_repeat Simple_repeat 1 178 0 7 1090 512 358 0 6 chr5 66266201 66266381 -86270878 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1090 612 288 84 19 chr5 66266402 66266664 -86270595 - B4A SINE B4 -12 280 2 7 1090 443 228 0 0 chr5 66267298 66267377 -86269882 + PB1D7 SINE Alu 1 79 -41 7 1090 360 0 0 0 chr5 66267383 66267423 -86269836 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1090 203 348 33 0 chr5 66267626 66267718 -86269541 + MIR SINE MIR 159 253 -9 8 1090 322 269 103 15 chr5 66267935 66268071 -86269188 + B1F SINE Alu 1 148 -1 8 1090 200 125 75 0 chr5 66268072 66268112 -86269147 + A-rich Low_complexity Low_complexity 6 48 0 8 1090 276 319 0 0 chr5 66268112 66268184 -86269075 + ID4_ SINE ID 2 73 -10 8 1090 242 206 52 42 chr5 66268538 66268634 -86268625 + MER53 DNA hAT 1 97 -96 8 1090 452 226 28 19 chr5 66268979 66269087 -86268172 + RSINE1 SINE B4 2 110 -55 8 1090 1069 89 7 0 chr5 66269183 66269329 -86267930 + B1_Mus1 SINE Alu 1 147 -1 8 1090 465 225 0 0 chr5 66270003 66270123 -86267136 + (CA)n Simple_repeat Simple_repeat 2 121 0 8 1090 213 39 0 0 chr5 66270215 66270241 -86267018 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 1090 477 0 0 0 chr5 66272095 66272148 -86265111 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1090 218 204 0 22 chr5 66272462 66272507 -86264752 + CT-rich Low_complexity Low_complexity 4 47 0 8 1090 318 50 0 0 chr5 66272542 66272582 -86264677 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 8 1090 509 256 75 0 chr5 66272626 66272759 -86264500 - B1F1 SINE Alu -6 143 1 8 1090 233 296 11 22 chr5 66272800 66272890 -86264369 + MER97c DNA MER1_type? 504 592 -498 8 1090 279 262 23 69 chr5 66273271 66273402 -86263857 - RMER20B LTR ERVK -502 125 1 8 1090 231 237 104 13 chr5 66273614 66273691 -86263568 - BC1_Mm scRNA scRNA -53 99 16 8 1090 243 0 0 0 chr5 66273703 66273730 -86263529 + (CAA)n Simple_repeat Simple_repeat 1 27 0 8 1090 347 250 76 65 chr5 66273946 66274130 -86263129 + MIR SINE MIR 43 228 -34 8 1090 331 257 0 0 chr5 66275336 66275410 -86261849 + PB1D10 SINE Alu 1 74 -43 8 1090 598 278 7 46 chr5 66275508 66275659 -86261600 - RSINE1 SINE B4 -17 148 4 8 1090 25 51 0 0 chr5 66275661 66275700 -86261559 + AT_rich Low_complexity Low_complexity 1 39 0 8 1090 650 192 178 17 chr5 66275781 66275961 -86261298 - B3 SINE B2 -4 212 4 8 1090 339 258 29 49 chr5 66276415 66276517 -86260742 + RSINE1 SINE B4 41 140 -25 8 1090 243 291 24 48 chr5 66276953 66277036 -86260223 - ID4 SINE ID -1 82 2 8 1090 301 246 14 14 chr5 66277214 66277284 -86259975 + ID2 SINE ID 3 72 -11 8 1090 411 21 0 0 chr5 66277286 66277334 -86259925 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1090 378 0 0 0 chr5 66277780 66277822 -86259437 + (TTTTA)n Simple_repeat Simple_repeat 3 44 0 8 1090 919 125 0 14 chr5 66277822 66277960 -86259299 - B1_Mus1 SINE Alu -12 136 1 8 1090 327 250 14 27 chr5 66278604 66278645 -86258614 + ORR1B1-int LTR MaLR 609 647 -862 8 1090 854 93 0 0 chr5 66278645 66278763 -86258496 + B1_Mus1 SINE Alu 2 119 -29 8 1090 248 219 103 58 chr5 66278690 66278777 -86258482 + RLTR25A LTR ERVK 522 612 -491 8 1090 273 381 76 25 chr5 66278869 66279184 -86258075 - Lx8 LINE L1 -7 7466 7136 8 1090 436 222 0 50 chr5 66279248 66279356 -86257903 - B1F SINE Alu -15 105 3 8 1090 248 345 20 40 chr5 66280998 66281146 -86256113 - MIRb SINE MIR -83 185 41 8 1090 890 135 21 14 chr5 66281161 66281172 -86256087 - B1_Mus2 SINE Alu 0 147 138 8 1090 1211 86 0 6 chr5 66281172 66281347 -86255912 + (TTTC)n Simple_repeat Simple_repeat 2 175 0 8 1090 890 135 21 14 chr5 66281347 66281478 -86255781 - B1_Mus2 SINE Alu -10 137 4 8 1090 329 245 68 98 chr5 66281478 66281535 -86255724 - MT2B2 LTR ERVL -426 158 107 8 1090 393 277 58 116 chr5 66281478 66281502 -86255757 - B4 SINE B4 -76 216 71 8 1090 254 253 71 12 chr5 66281848 66281932 -86255327 - MIR SINE MIR -118 144 56 8 1090 445 104 26 0 chr5 66282986 66283063 -86254196 + (TCCCC)n Simple_repeat Simple_repeat 4 82 0 8 1090 419 272 0 0 chr5 66283072 66283164 -86254095 - PB1D10 SINE Alu -21 96 5 8 1090 1154 69 14 0 chr5 66285403 66285548 -86251711 - B1_Mm SINE Alu 0 147 1 8 1090 398 290 0 0 chr5 66286188 66286281 -86250978 - PB1D7 SINE Alu -22 98 6 8 1090 455 283 128 60 chr5 66286899 66287156 -86250103 - MLT1A LTR MaLR -10 380 94 8 1090 217 309 44 35 chr5 66287391 66287505 -86249754 - MIRb SINE MIR -126 142 28 8 1090 288 130 0 0 chr5 66287619 66287665 -86249594 + (ATGGTG)n Simple_repeat Simple_repeat 4 49 0 8 1090 313 282 113 28 chr5 66287693 66287799 -86249460 - PB1D10 SINE Alu -2 115 1 8 1090 304 256 12 24 chr5 66287819 66287903 -86249356 - ID4 SINE ID 0 83 1 8 1090 1259 41 0 0 chr5 66288481 66288627 -86248632 + B1_Mus2 SINE Alu 2 147 0 8 1090 243 0 0 0 chr5 66288627 66288654 -86248605 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1090 207 0 0 0 chr5 66289232 66289255 -86248004 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1090 279 339 33 0 chr5 66289306 66289427 -86247832 - Charlie13b DNA Charlie -184 328 204 8 1090 291 250 14 0 chr5 66290280 66290352 -86246907 + PB1D10 SINE Alu 45 117 0 8 1090 264 312 45 30 chr5 66290450 66290582 -86246677 + L1ME3B LINE L1 5437 5570 -624 8 1090 320 317 84 10 chr5 66290640 66290936 -86246323 + L1ME3B LINE L1 5650 5967 -273 8 1090 276 30 0 0 chr5 66291139 66291172 -86246087 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1090 893 110 66 0 chr5 66291172 66291308 -86245951 - B2_Mm2 SINE B2 -50 145 1 8 1090 362 360 94 5 chr5 66291355 66291567 -86245692 + MIR SINE MIR 18 248 -14 8 1090 297 0 0 0 chr5 66292712 66292745 -86244514 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1090 483 18 0 0 chr5 66292745 66292800 -86244459 + (GA)n Simple_repeat Simple_repeat 1 56 0 8 1090 784 256 46 98 chr5 66292805 66293031 -86244228 - RMER16 LTR ERVK -27 506 292 8 1090 1263 27 7 0 chr5 66293031 66293177 -86244082 + B1_Mus2 SINE Alu 1 147 0 8 1090 784 233 54 93 chr5 66293177 66293342 -86243917 - RMER16 LTR ERVK -242 291 2 8 1090 263 331 108 108 chr5 66293435 66293571 -86243688 - B4 SINE B4 -59 233 90 8 1090 2158 141 42 51 chr5 66293571 66293981 -86243278 + MTB_Mm LTR MaLR 2 407 0 8 1090 263 331 108 108 chr5 66293981 66294030 -86243229 - B4 SINE B4 -203 89 48 8 1090 1250 255 118 11 chr5 66294450 66294799 -86242460 + MTD LTR MaLR 33 418 -1 8 1090 258 245 0 20 chr5 66295048 66295098 -86242161 + ID4 SINE ID 21 69 -14 8 1090 513 195 186 46 chr5 66296063 66296257 -86241002 + Lx9 LINE L1 7424 7644 0 8 1090 313 342 42 56 chr5 66296384 66296598 -86240661 - RMER12 LTR ERVK 0 1322 1112 8 1090 189 147 0 0 chr5 66296603 66296637 -86240622 + (AGGGGG)n Simple_repeat Simple_repeat 2 35 0 8 1090 5131 99 69 6 chr5 66296866 66297649 -86239610 - RLTR22_Mur LTR ERVK -1016 832 1 8 1090 208 333 0 0 chr5 66298350 66298404 -86238855 - L2c LINE L2 -1 3386 3333 8 1090 377 105 0 109 chr5 66298573 66298701 -86238558 + (TCTCTG)n Simple_repeat Simple_repeat 2 115 0 8 1090 961 229 22 26 chr5 66298703 66298932 -86238327 + ORR1D1 LTR MaLR 147 374 0 8 1090 830 190 7 26 chr5 66299376 66299527 -86237732 - B1_Mur4 SINE Alu -1 149 2 8 1090 359 266 65 79 chr5 66300389 66300409 -86236850 + MT2B LTR ERVL 142 159 -442 8 1090 785 201 15 0 chr5 66300409 66300543 -86236716 + B1_Mur1 SINE Alu 4 139 -10 8 1090 360 219 0 0 chr5 66300545 66300627 -86236632 + GA-rich Low_complexity Low_complexity 5 86 0 8 1090 418 271 60 46 chr5 66300772 66300923 -86236336 + MER34 LTR ERV1 5 157 -385 8 1090 485 326 29 54 chr5 66301030 66301234 -86236025 + MER34 LTR ERV1 321 519 -23 8 1090 994 86 0 0 chr5 66301357 66301485 -86235774 + B1_Mus1 SINE Alu 2 129 -19 8 1090 342 337 63 74 chr5 66302052 66302241 -86235018 - MER91A DNA Tip100 -9 187 1 8 1090 27 0 0 0 chr5 66302383 66302410 -86234849 + AT_rich Low_complexity Low_complexity 1 27 0 8 1090 1151 95 0 0 chr5 66302486 66302634 -86234625 + B1_Mus1 SINE Alu 1 148 0 8 1090 198 0 0 0 chr5 66303684 66303706 -86233553 + (CACCC)n Simple_repeat Simple_repeat 4 25 0 8 1090 366 42 0 0 chr5 66304046 66304094 -86233165 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1090 369 0 0 0 chr5 66304094 66304134 -86233125 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 1090 312 346 0 13 chr5 66304145 66304224 -86233035 - ID4_ SINE ID -3 80 3 8 1090 220 80 19 57 chr5 66305021 66305074 -86232185 + A-rich Low_complexity Low_complexity 2 52 0 8 1090 399 182 0 0 chr5 66305127 66305204 -86232055 + T-rich Low_complexity Low_complexity 1 77 0 8 1090 468 251 106 25 chr5 66305204 66305456 -86231803 + L1MA4 LINE L1 5761 6027 -1617 8 1090 473 226 47 47 chr5 66306115 66306222 -86231037 - PB1D10 SINE Alu 0 117 11 8 1090 368 254 237 0 chr5 66306120 66306238 -86231021 - ID_B1 SINE B4 -3 221 76 8 1090 3456 25 5 2 chr5 66306634 66307029 -86230230 + MTA_Mm LTR MaLR 1 396 0 8 1090 232 256 24 24 chr5 66307031 66307115 -86230144 + CT-rich Low_complexity Low_complexity 3 86 0 8 1090 278 27 0 0 chr5 66307159 66307196 -86230063 + B1_Mus2 SINE Alu 111 147 0 8 1090 1186 103 26 26 chr5 66307504 66307693 -86229566 - B2_Mm1t SINE B2 -2 191 3 8 1090 2110 152 43 9 chr5 66308090 66308435 -86228824 - ORR1B2 LTR MaLR -10 357 1 8 1090 936 96 11 22 chr5 66308765 66308946 -86228313 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1090 1250 41 7 0 chr5 66309170 66309316 -86227943 + B1_Mm SINE Alu 1 147 0 8 1090 195 69 0 0 chr5 66309326 66309355 -86227904 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1090 180 0 0 0 chr5 66309442 66309462 -86227797 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1090 313 310 46 0 chr5 66310254 66310341 -86226918 + B1F2 SINE Alu 2 92 -57 9 1090 284 368 9 17 chr5 66310255 66310371 -86226888 + ID_B1 SINE B4 84 198 -26 9 1090 182 260 273 30 chr5 66310383 66310482 -86226777 + MIRm SINE MIR 64 186 -90 9 1090 248 355 138 32 chr5 66310750 66311032 -86226227 - LTR85a LTR Gypsy? -61 641 330 9 1090 291 77 651 12 chr5 66311460 66311546 -86225713 - B2_Mm2 SINE B2 -8 187 47 9 1090 1087 83 134 0 chr5 66311597 66311754 -86225505 - B2_Mm1t SINE B2 -14 179 2 9 1090 2553 72 6 0 chr5 66311756 66312077 -86225182 - ORR1A2 LTR MaLR -4 323 1 9 1090 307 336 77 54 chr5 66312078 66312273 -86224986 - LTR85a LTR Gypsy? -433 269 76 9 1090 234 0 0 0 chr5 66312273 66312299 -86224960 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 9 1090 307 336 77 54 chr5 66312299 66312364 -86224895 - LTR85a LTR Gypsy? -627 75 4 9 1090 697 253 127 12 chr5 66313335 66313587 -86223672 - MLT2D LTR ERVL -50 364 84 9 1090 1433 76 16 0 chr5 66313591 66313776 -86223483 + B2_Mm2 SINE B2 2 189 -6 9 1090 622 283 119 89 chr5 66313908 66314245 -86223014 + MLT1A0 LTR MaLR 1 347 -18 9 1090 567 85 0 0 chr5 66314461 66314543 -86222716 + (TG)n Simple_repeat Simple_repeat 1 82 0 9 1090 1336 79 45 0 chr5 66314767 66314945 -86222314 + B2_Mm2 SINE B2 2 187 -8 9 1090 788 130 290 0 chr5 66315047 66315209 -86222050 - B3 SINE B2 -6 210 2 9 1090 284 274 97 57 chr5 66315396 66315520 -86221739 - MIR SINE MIR -20 242 114 9 1090 300 0 0 0 chr5 66315534 66315578 -86221681 - L1Md_T LINE L1 0 6582 6539 9 1090 763 200 14 20 chr5 66316107 66316255 -86221004 + B1_Mur3 SINE Alu 1 147 -2 9 1090 348 161 0 0 chr5 66316611 66316673 -86220586 + (TA)n Simple_repeat Simple_repeat 2 63 0 9 1090 1427 285 149 25 chr5 66316674 66317239 -86220020 - Lx8 LINE L1 -22 7451 6817 9 1090 226 150 0 3 chr5 66317286 66317333 -86219926 + ID4 SINE ID 1 46 -37 9 1090 1337 255 52 3 chr5 66317364 66317691 -86219568 - ORR1E LTR MaLR -11 348 6 9 1090 1218 55 0 7 chr5 66318327 66318475 -86218784 - B1_Mus2 SINE Alu 0 147 1 9 1090 494 239 137 0 chr5 66318477 66318594 -86218665 + B1_Mur1 SINE Alu 16 148 -1 9 1090 513 276 43 130 chr5 66318632 66318840 -86218419 + B3A SINE B2 9 198 0 9 1090 470 270 20 0 chr5 66318872 66318972 -86218287 + B3A SINE B2 1 102 -96 9 1090 426 39 0 0 chr5 66318984 66319036 -86218223 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1090 274 345 0 0 chr5 66319047 66319131 -86218128 - MIRb SINE MIR -152 116 33 9 1090 340 278 57 7 chr5 66319265 66319370 -86217889 - PB1D10 SINE Alu -3 114 10 9 1090 260 323 158 0 chr5 66319721 66319848 -86217411 + RSINE1 SINE B4 2 148 -17 9 1090 978 167 0 0 chr5 66319876 66320056 -86217203 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1090 1017 130 0 0 chr5 66320079 66320241 -86217018 + (CA)n Simple_repeat Simple_repeat 2 163 0 9 1090 631 295 0 0 chr5 66321043 66321182 -86216077 + ID_B1 SINE B4 86 224 0 9 1090 273 319 36 7 chr5 66321214 66321353 -86215906 + MER113 DNA MER1_type 262 404 -117 9 1090 681 90 0 0 chr5 66321788 66321899 -86215360 + (CAAAA)n Simple_repeat Simple_repeat 3 113 0 9 1090 1434 68 0 0 chr5 66321956 66322133 -86215126 + B2_Mm2 SINE B2 2 178 -17 9 1090 239 100 50 0 chr5 66322133 66322173 -86215086 + PB1D7 SINE Alu 78 119 -1 9 1091 285 301 86 0 chr5 66322828 66322921 -86214338 - LTR16B LTR ERVL -361 102 2 9 1091 369 344 106 27 chr5 66323234 66323422 -86213837 + MER102b DNA MER1_type 1 203 -138 9 1091 611 292 18 18 chr5 66323464 66323628 -86213631 + RSINE1 SINE B4 2 165 0 9 1091 977 323 97 32 chr5 66323754 66324166 -86213093 + MLT1J LTR MaLR 4 442 -70 9 1091 580 278 173 0 chr5 66324166 66324357 -86212902 + ID_B1 SINE B4 1 224 0 9 1091 1350 100 0 6 chr5 66324399 66324580 -86212679 - B2_Mm2 SINE B2 -14 181 2 9 1091 377 309 121 29 chr5 66324587 66324607 -86212652 - B2_Mm2 SINE B2 -5 190 172 9 1091 231 36 0 0 chr5 66324607 66324635 -86212624 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1091 189 0 0 0 chr5 66324635 66324655 -86212604 + (GA)n Simple_repeat Simple_repeat 1 21 0 9 1091 632 249 90 1 chr5 66324655 66324806 -86212453 - B3A SINE B2 -24 171 2 9 1091 2585 55 61 3 chr5 66325612 66325939 -86211320 - ORR1A1 LTR MaLR 0 346 1 9 1091 201 147 0 0 chr5 66325969 66326003 -86211256 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 9 1091 263 161 0 18 chr5 66326062 66326119 -86211140 + A-rich Low_complexity Low_complexity 2 57 0 9 1091 1073 196 56 5 chr5 66327207 66327402 -86209857 - B3 SINE B2 -10 206 2 9 1091 194 116 0 23 chr5 66327935 66327979 -86209280 + (CAAAAA)n Simple_repeat Simple_repeat 5 47 0 9 1091 464 266 67 47 chr5 66328101 66328251 -86209008 + B3A SINE B2 5 157 -41 9 1091 277 234 92 41 chr5 66328362 66328460 -86208799 - MIR SINE MIR -126 136 34 9 1091 180 0 0 0 chr5 66329142 66329162 -86208097 + (TA)n Simple_repeat Simple_repeat 1 20 0 9 1091 521 248 31 8 chr5 66329769 66329899 -86207360 + B1F SINE Alu 1 133 -16 9 1091 578 112 0 0 chr5 66329938 66330018 -86207241 - B1_Mur3 SINE Alu -65 84 5 9 1091 863 288 63 62 chr5 66330354 66330864 -86206395 + Tigger7 DNA MER2_type 69 557 -148 9 1091 1223 55 7 0 chr5 66330897 66331043 -86206216 - B1_Mus1 SINE Alu 0 148 2 9 1091 492 18 0 0 chr5 66331081 66331138 -86206121 + (TA)n Simple_repeat Simple_repeat 2 58 0 9 1091 207 0 0 0 chr5 66331138 66331161 -86206098 + (TG)n Simple_repeat Simple_repeat 1 23 0 9 1091 548 256 41 68 chr5 66331161 66331308 -86205951 - B3A SINE B2 -16 182 40 9 1091 205 234 0 21 chr5 66332361 66332409 -86204850 - MIR SINE MIR -12 250 204 9 1091 2281 146 92 13 chr5 66332438 66332757 -86204502 - MTC LTR MaLR 0 421 107 9 1091 1183 68 0 0 chr5 66332757 66332904 -86204355 + B1_Mus2 SINE Alu 1 147 0 9 1091 2281 146 92 13 chr5 66332904 66332974 -86204285 - MTC LTR MaLR -315 106 1 9 1091 247 208 170 0 chr5 66332988 66333041 -86204218 - B1F SINE Alu -31 118 57 9 1091 21 0 0 0 chr5 66333068 66333089 -86204170 + AT_rich Low_complexity Low_complexity 1 21 0 9 1091 265 295 121 23 chr5 66333097 66333229 -86204030 - MIRb SINE MIR -107 161 17 9 1091 230 383 83 18 chr5 66333498 66333716 -86203543 - MIR SINE MIR -20 242 11 9 1091 1288 34 0 0 chr5 66333934 66334081 -86203178 + B1_Mm SINE Alu 1 147 0 9 1091 335 379 102 12 chr5 66334169 66334423 -86202836 + L1MC4 LINE L1 6937 7213 -829 9 1091 450 182 221 26 chr5 66334545 66334658 -86202601 - B3A SINE B2 -59 136 2 9 1091 1526 160 206 25 chr5 66334980 66335301 -86201958 - ORR1B1 LTR MaLR -8 386 8 9 1091 2070 138 36 9 chr5 66335644 66335974 -86201285 - ORR1C1 LTR MaLR -39 339 1 9 1091 213 244 0 0 chr5 66336024 66336069 -86201190 + (CATA)n Simple_repeat Simple_repeat 2 46 0 9 1091 440 296 67 104 chr5 66336089 66336357 -86200902 + L1MC4 LINE L1 7552 7809 -233 9 1091 1264 48 0 0 chr5 66336365 66336512 -86200747 + B1_Mm SINE Alu 1 147 0 9 1091 423 132 0 0 chr5 66336512 66336580 -86200679 + (A)n Simple_repeat Simple_repeat 1 68 0 9 1091 793 308 42 4 chr5 66336880 66337118 -86200141 + MER2 DNA MER2_type 99 345 0 9 1091 215 321 178 20 chr5 66337244 66337537 -86199722 - L2 LINE L2 -628 2791 2453 9 1091 483 285 29 0 chr5 66337538 66337675 -86199584 + Charlie7 DNA MER1_type 317 457 -2155 9 1091 300 310 88 31 chr5 66337723 66337883 -86199376 + Charlie7 DNA MER1_type 2168 2336 -276 9 1091 922 231 65 124 chr5 66337903 66338259 -86199000 - Lx8 LINE L1 -204 7269 6935 9 1091 600 73 0 0 chr5 66338287 66338369 -86198890 + (TA)n Simple_repeat Simple_repeat 2 83 0 9 1091 867 163 15 0 chr5 66338373 66338508 -86198751 - B1_Mur4 SINE Alu -13 137 1 9 1091 1229 48 0 0 chr5 66338566 66338712 -86198547 - B1_Mm SINE Alu -1 146 1 9 1091 385 281 0 43 chr5 66338771 66338864 -86198395 - PB1D10 SINE Alu 0 117 29 9 1091 273 209 0 0 chr5 66339040 66339107 -86198152 + (TATG)n Simple_repeat Simple_repeat 4 70 0 9 1091 1209 61 0 0 chr5 66339239 66339386 -86197873 + B1_Mus2 SINE Alu 1 147 0 9 1091 185 0 40 0 chr5 66339390 66339415 -86197844 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 9 1091 531 251 101 101 chr5 66339813 66340030 -86197229 + B4 SINE B4 25 241 -51 9 1091 648 186 124 0 chr5 66340058 66340187 -86197072 + RSINE1 SINE B4 4 148 -17 9 1091 757 70 217 0 chr5 66340416 66340531 -86196728 + B1_Mm SINE Alu 6 145 -2 9 1091 243 0 0 0 chr5 66340536 66340563 -86196696 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1091 457 219 25 42 chr5 66340627 66340746 -86196513 + PB1D10 SINE Alu 1 117 0 9 1091 630 0 0 0 chr5 66340820 66340890 -86196369 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 9 1091 1007 221 29 24 chr5 66341185 66341394 -86195865 + B3 SINE B2 7 216 0 9 1091 307 241 48 62 chr5 66341395 66341541 -86195718 + L1ME4a LINE L1 5981 6124 0 9 1091 21 36 0 0 chr5 66341819 66341847 -86195412 + AT_rich Low_complexity Low_complexity 1 28 0 9 1091 254 250 36 0 chr5 66342336 66342392 -86194867 - ID_B1 SINE B4 -8 216 159 9 1091 200 111 0 27 chr5 66342395 66342432 -86194827 + (TGGGGG)n Simple_repeat Simple_repeat 1 36 0 9 1091 304 256 0 71 chr5 66342581 66342665 -86194594 + MLT1A1 LTR MaLR 323 400 -8 9 1091 277 177 195 14 chr5 66342789 66342863 -86194396 - ID4_ SINE ID -60 92 6 9 1091 610 191 0 42 chr5 66343456 66343576 -86193683 - PB1D10 SINE Alu 0 117 3 9 1091 236 329 82 27 chr5 66344344 66344491 -86192768 - L2c LINE L2 -211 3176 3022 9 1091 839 278 63 87 chr5 66344690 66345089 -86192170 + Lx8 LINE L1 7039 7447 -26 1 1091 846 206 91 19 chr5 66345297 66345505 -86191754 + URR1A DNA MER1_type 3 225 -1 1 1091 413 265 19 19 chr5 66345510 66345614 -86191645 + MTEa LTR MaLR 14 117 -242 1 1091 1188 34 0 75 chr5 66345680 66345839 -86191420 + B1_Mus2 SINE Alu 1 147 0 1 1091 234 0 0 0 chr5 66345839 66345865 -86191394 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1091 261 57 0 0 chr5 66345871 66345906 -86191353 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1091 420 218 48 38 chr5 66345914 66346019 -86191240 + MTEa LTR MaLR 272 377 -2 1 1091 219 69 0 0 chr5 66346027 66346056 -86191203 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1091 23 33 0 0 chr5 66347627 66347657 -86189602 + AT_rich Low_complexity Low_complexity 1 30 0 1 1091 324 0 0 0 chr5 66348008 66348044 -86189215 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1091 1716 141 139 32 chr5 66348280 66348618 -86188641 - ORR1D1 LTR MaLR 0 374 1 1 1091 336 224 12 50 chr5 66348865 66348945 -86188314 + RSINE1 SINE B4 3 79 -86 1 1091 814 271 84 29 chr5 66348972 66349283 -86187976 - RMER15 LTR ERVL -28 547 220 1 1091 540 135 26 33 chr5 66349445 66349598 -86187661 + (CATA)n Simple_repeat Simple_repeat 4 155 0 1 1091 302 0 26 0 chr5 66349924 66349962 -86187297 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1 1091 432 291 31 0 chr5 66350432 66350559 -86186700 - B1F2 SINE Alu -18 131 1 1 1091 358 302 0 19 chr5 66350606 66350714 -86186545 - PB1 SINE Alu -7 120 15 1 1091 453 235 258 0 chr5 66350923 66351055 -86186204 - ORR1C1 LTR MaLR -31 336 171 1 1091 450 0 0 0 chr5 66351067 66351117 -86186142 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1091 844 112 43 68 chr5 66351117 66351279 -86185980 - B2_Mm2 SINE B2 -15 180 23 1 1091 781 232 26 88 chr5 66351228 66351455 -86185804 - ORR1C1 LTR MaLR -165 213 1 1 1091 221 326 102 36 chr5 66352132 66352269 -86184990 - MIRb SINE MIR -11 257 112 1 1091 214 196 19 38 chr5 66352569 66352622 -86184637 + GA-rich Low_complexity Low_complexity 1 52 0 1 1091 309 320 46 34 chr5 66352818 66352993 -86184266 + L1M5 LINE L1 2287 2463 -3683 1 1091 1121 63 28 0 chr5 66353013 66353155 -86184104 - B1_Mus2 SINE Alu -1 146 1 1 1091 977 79 14 5 chr5 66353319 66353464 -86183795 + ORR1A4 LTR MaLR 203 374 0 1 1091 366 152 0 0 chr5 66354301 66354393 -86182866 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1091 351 190 45 26 chr5 66354481 66354588 -86182671 - B1F SINE Alu 0 120 4 1 1091 423 315 51 57 chr5 66354615 66354790 -86182469 + MER58B DNA MER1_type 167 340 -1 1 1091 235 273 18 18 chr5 66354865 66354921 -86182338 + ID_B1 SINE B4 159 214 -10 1 1091 415 199 199 83 chr5 66355012 66355193 -86182066 + B3 SINE B2 1 202 -14 1 1091 206 263 18 0 chr5 66355195 66355252 -86182007 + (CATATA)n Simple_repeat Simple_repeat 4 61 0 1 1091 306 0 0 0 chr5 66355434 66355468 -86181791 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1 1091 32 0 0 0 chr5 66355493 66355525 -86181734 + AT_rich Low_complexity Low_complexity 1 32 0 1 1091 495 293 35 35 chr5 66355551 66355724 -86181535 - MIR SINE MIR -13 249 77 1 1091 375 274 53 0 chr5 66355731 66355826 -86181433 + ID_B1 SINE B4 87 186 -38 1 1091 320 289 52 54 chr5 66355826 66355862 -86181397 + PB1D10 SINE Alu 6 149 0 1 1091 215 81 54 0 chr5 66355936 66355973 -86181286 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 1091 477 0 0 0 chr5 66355973 66356026 -86181233 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1091 420 20 0 0 chr5 66356037 66356087 -86181172 - B2_Mm2 SINE B2 -144 51 2 1 1091 216 245 19 0 chr5 66356242 66356295 -86180964 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 1 1091 396 0 0 0 chr5 66357481 66357525 -86179734 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1091 1310 47 47 0 chr5 66357591 66357760 -86179499 + B2_Mm1t SINE B2 2 178 -15 1 1091 429 20 0 0 chr5 66357760 66357810 -86179449 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 1 1091 23 33 0 0 chr5 66359173 66359203 -86178056 + AT_rich Low_complexity Low_complexity 1 30 0 1 1091 483 273 26 39 chr5 66359379 66359535 -86177724 - B3A SINE B2 0 198 45 1 1091 1062 74 0 0 chr5 66359530 66359665 -86177594 + B1_Mm SINE Alu 13 147 0 1 1091 1088 106 32 48 chr5 66359745 66359934 -86177325 - B2_Mm2 SINE B2 -8 187 2 1 1091 398 297 18 0 chr5 66361190 66361301 -86175958 - MER5A1 DNA MER1_type -3 163 51 1 1091 352 133 167 32 chr5 66361407 66361517 -86175742 - B2_Mm2 SINE B2 -7 186 47 1 1091 25 31 0 0 chr5 66361587 66361619 -86175640 + AT_rich Low_complexity Low_complexity 1 32 0 1 1091 1227 114 6 28 chr5 66361624 66361805 -86175454 - B2_Mm1t SINE B2 -15 178 2 1 1091 850 263 10 21 chr5 66362809 66363003 -86174256 - ID_B1 SINE B4 -8 216 25 1 1091 1473 74 16 0 chr5 66363154 66363344 -86173915 + B2_Mm2 SINE B2 1 193 -2 1 1091 1507 63 5 0 chr5 66363348 66363539 -86173720 + B2_Mm1a SINE B2 1 192 -1 1 1091 324 0 0 0 chr5 66363568 66363604 -86173655 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1091 798 78 0 0 chr5 66363628 66363743 -86173516 + (GA)n Simple_repeat Simple_repeat 2 116 0 1 1091 243 75 49 24 chr5 66363789 66363830 -86173429 - B3 SINE B2 -173 43 2 1 1091 589 228 0 26 chr5 66364193 66364310 -86172949 - ID_B1 SINE B4 0 224 111 1 1091 288 0 0 0 chr5 66364330 66364362 -86172897 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1091 244 297 164 71 chr5 66364433 66364473 -86172786 - LTR84a LTR ERVL -369 392 345 1 1091 431 204 73 18 chr5 66364473 66364583 -86172676 + PB1D10 SINE Alu 2 117 0 1 1091 248 299 160 70 chr5 66364583 66364824 -86172435 - LTR84a LTR ERVL -417 344 86 1 1091 265 289 53 43 chr5 66364855 66364949 -86172310 - PB1D7 SINE Alu -6 114 20 1 1091 1455 65 22 0 chr5 66365157 66365341 -86171918 - B2_Mm2 SINE B2 -7 188 1 1 1091 274 319 56 0 chr5 66365877 66366021 -86171238 - L1M5 LINE L1 -2213 3933 3782 1 1091 481 259 26 92 chr5 66366132 66366189 -86171070 + ID SINE ID 25 71 -153 1 1091 216 342 16 88 chr5 66366189 66366314 -86170945 + PB1D10 SINE Alu 1 116 -1 1 1091 1147 96 0 0 chr5 66366318 66366464 -86170795 + B1_Mus1 SINE Alu 2 147 -1 1 1091 31 26 0 0 chr5 66366470 66366508 -86170751 + AT_rich Low_complexity Low_complexity 1 38 0 1 1091 815 159 22 7 chr5 66366636 66366766 -86170493 + B1_Mus2 SINE Alu 2 134 -13 1 1091 216 0 0 0 chr5 66366766 66366790 -86170469 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1091 346 260 47 19 chr5 66366817 66366923 -86170336 - PB1 SINE Alu 0 127 19 1 1091 299 125 68 0 chr5 66366993 66367081 -86170178 + (CTGGGG)n Simple_repeat Simple_repeat 1 94 0 1 1091 579 324 92 9 chr5 66367130 66367348 -86169911 - B4A SINE B4 -47 245 10 1 1091 1363 105 11 0 chr5 66368810 66369000 -86168259 - B2_Mm1t SINE B2 0 193 2 1 1091 492 239 165 0 chr5 66369261 66369370 -86167889 + B1F2 SINE Alu 18 144 -5 1 1091 205 306 45 45 chr5 66369677 66369766 -86167493 - MIRc SINE MIR -78 190 102 1 1091 255 211 77 0 chr5 66369932 66369984 -86167275 - PB1D7 SINE Alu 0 120 65 1 1091 561 242 38 8 chr5 66369939 66370072 -86167187 - ID_B1 SINE B4 -7 217 81 1 1091 271 315 93 53 chr5 66370329 66370480 -86166779 + MLT1D LTR MaLR 128 284 -221 1 1091 404 266 120 8 chr5 66370512 66370637 -86166622 + MLT1D LTR MaLR 365 503 -2 1 1091 324 308 117 137 chr5 66370678 66371028 -86166231 + ORR1E LTR MaLR 6 348 -11 1 1091 338 94 0 15 chr5 66371133 66371198 -86166061 + (CAAA)n Simple_repeat Simple_repeat 2 65 0 1 1091 246 379 96 22 chr5 66371207 66371385 -86165874 - L2 LINE L2 -541 2878 2688 1 1091 756 153 114 0 chr5 66371636 66371767 -86165492 + B1_Mur4 SINE Alu 5 150 0 1 1091 1110 86 107 22 chr5 66371770 66371948 -86165311 + B2_Mm2 SINE B2 2 194 -1 1 1091 1262 97 11 26 chr5 66374133 66374323 -86162936 + B2_Mm1a SINE B2 1 187 -6 1 1091 528 229 28 0 chr5 66374422 66374531 -86162728 + PB1D7 SINE Alu 3 114 -6 1 1091 1527 68 0 10 chr5 66374732 66374926 -86162333 - B2_Mm2 SINE B2 -3 192 1 1 1091 1053 141 206 0 chr5 66374926 66375110 -86162149 - URR1A DNA MER1_type -4 222 1 1 1091 352 234 13 0 chr5 66375144 66375221 -86162038 + B4A SINE B4 1 78 -214 1 1091 446 151 0 48 chr5 66375229 66375375 -86161884 + (CCCCAG)n Simple_repeat Simple_repeat 1 139 0 1 1091 345 340 59 62 chr5 66375498 66375789 -86161470 + L1ME4a LINE L1 5756 6047 -77 1 1091 1271 41 0 0 chr5 66375789 66375936 -86161323 - B1_Mus2 SINE Alu 0 147 1 1 1091 345 340 59 62 chr5 66375936 66375951 -86161308 + L1ME4a LINE L1 6048 6061 -63 1 1091 243 169 0 63 chr5 66376018 66376081 -86161178 + T-rich Low_complexity Low_complexity 2 60 0 1 1091 546 311 44 104 chr5 66376104 66376488 -86160771 - MLT1B LTR MaLR -4 386 26 1 1091 964 266 91 91 chr5 66376507 66376840 -86160419 - MTE2a LTR MaLR -6 373 40 1 1091 1442 97 0 5 chr5 66376840 66377036 -86160223 - B2_Mm2 SINE B2 0 195 1 1 1091 964 266 91 91 chr5 66377036 66377075 -86160184 - MTE2a LTR MaLR -340 39 1 1 1091 21 0 0 0 chr5 66377117 66377138 -86160121 + AT_rich Low_complexity Low_complexity 1 21 0 1 1091 222 118 0 0 chr5 66377271 66377305 -86159954 + (TAA)n Simple_repeat Simple_repeat 1 34 0 1 1091 279 0 0 0 chr5 66377307 66377338 -86159921 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1 1091 1272 35 0 0 chr5 66377338 66377482 -86159777 + B1_Mus1 SINE Alu 1 144 -4 1 1091 213 39 0 0 chr5 66377484 66377510 -86159749 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 1091 1744 286 87 18 chr5 66377519 66378128 -86159131 + Lx8 LINE L1 6576 7226 -247 1 1091 379 293 0 39 chr5 66378135 66378238 -86159021 + RMER15 LTR ERVL 371 469 -106 1 1091 252 273 24 40 chr5 66378242 66378368 -86158891 + Lx8 LINE L1 7339 7462 -11 1 1091 1811 123 14 117 chr5 66378396 66378450 -86158809 - ORR1A2 LTR MaLR 0 327 278 1 1091 1224 65 154 0 chr5 66378450 66378619 -86158640 - B2_Mm2 SINE B2 0 195 1 1 1091 1811 123 14 117 chr5 66378619 66378914 -86158345 - ORR1A2 LTR MaLR -50 277 14 1 1091 1342 66 61 0 chr5 66378939 66379120 -86158139 + B2_Mm1a SINE B2 2 193 0 1 1091 227 273 44 80 chr5 66379883 66380134 -86157125 + RMER17D2 LTR ERVK 241 482 -327 1 1091 488 146 11 0 chr5 66380135 66380224 -86157035 + CT-rich Low_complexity Low_complexity 1 90 0 1 1091 180 0 0 0 chr5 66380224 66380244 -86157015 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 1 1091 749 130 8 54 chr5 66380256 66380386 -86156873 - B1_Mur3 SINE Alu -21 128 5 1 1091 371 279 86 29 chr5 66380273 66380413 -86156846 - B4 SINE B4 -88 204 57 1 1091 234 314 128 54 chr5 66381023 66381171 -86156088 + B4A SINE B4 48 206 -86 1 1091 422 272 0 37 chr5 66381068 66381175 -86156084 + PB1D10 SINE Alu 15 117 0 1 1091 397 228 41 58 chr5 66382028 66382149 -86155110 + PB1D9 SINE Alu 1 119 -1 1 1091 714 113 19 9 chr5 66382295 66382402 -86154857 + PB1D9 SINE Alu 2 109 -11 1 1091 243 0 0 0 chr5 66382403 66382430 -86154829 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1091 1219 118 136 9 chr5 66382584 66382797 -86154462 + ORR1B1 LTR MaLR 1 240 -154 1 1091 1206 21 49 28 chr5 66382892 66383328 -86153931 + (CA)n Simple_repeat Simple_repeat 1 445 0 1 1091 376 212 0 0 chr5 66383366 66383432 -86153827 + B1F SINE Alu 17 82 -67 1 1091 1341 91 10 26 chr5 66383493 66383685 -86153574 + B2_Mm2 SINE B2 2 190 -5 1 1091 652 239 81 27 chr5 66383781 66383887 -86153372 + B3A SINE B2 4 122 -76 1 1091 1496 58 11 0 chr5 66383887 66384076 -86153183 - B2_Mm1a SINE B2 -1 192 2 1 1091 652 244 80 38 chr5 66384076 66384178 -86153081 + B3A SINE B2 121 213 -3 1 1091 598 250 34 20 chr5 66384478 66384625 -86152634 - B1F1 SINE Alu 0 149 1 1 1091 316 297 8 85 chr5 66384661 66384790 -86152469 - MLT1F2 LTR MaLR -7 553 435 1 1091 271 274 0 0 chr5 66384790 66384874 -86152385 + CT-rich Low_complexity Low_complexity 3 86 0 1 1091 266 295 159 23 chr5 66384883 66385015 -86152244 - MLT1F2 LTR MaLR -169 400 251 1 1091 1127 69 7 7 chr5 66385047 66385193 -86152066 + B1_Mus2 SINE Alu 2 147 0 1 1091 311 290 59 20 chr5 66385280 66385382 -86151877 + MLT1B LTR MaLR 66 171 -219 1 1091 905 150 7 7 chr5 66385389 66385523 -86151736 + B1_Mur2 SINE Alu 2 136 -13 1 1091 690 75 0 0 chr5 66385523 66385616 -86151643 + (CAAGA)n Simple_repeat Simple_repeat 1 93 0 1 1091 357 276 87 22 chr5 66385932 66386167 -86151092 + L2a LINE L2 2858 3112 -314 1 1091 438 222 18 53 chr5 66386376 66386490 -86150769 - PB1D10 SINE Alu -7 110 1 1 1091 246 125 0 0 chr5 66386645 66386693 -86150566 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 1 1091 499 261 170 64 chr5 66386710 66386898 -86150361 + B3A SINE B2 9 216 0 1 1091 230 163 23 0 chr5 66386903 66386946 -86150313 + L1MC1 LINE L1 6027 6070 -263 1 1091 405 58 0 0 chr5 66386980 66387032 -86150227 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 1 1091 288 0 0 0 chr5 66387550 66387582 -86149677 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1091 320 141 218 38 chr5 66387583 66387646 -86149613 - Lx9 LINE L1 -30 7614 7536 1 1091 306 0 0 0 chr5 66387646 66387680 -86149579 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1091 561 187 340 25 chr5 66387681 66387840 -86149419 - B3 SINE B2 -7 209 1 1 1091 320 141 218 38 chr5 66387840 66387907 -86149352 - Lx9 LINE L1 -109 7535 7458 1 1091 339 150 0 0 chr5 66387907 66387967 -86149292 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1091 1634 141 96 4 chr5 66387977 66388248 -86149011 + MTC LTR MaLR 2 297 -124 1 1091 28 0 0 0 chr5 66388288 66388316 -86148943 + AT_rich Low_complexity Low_complexity 1 28 0 1 1091 267 154 0 88 chr5 66388341 66388398 -86148861 - B3 SINE B2 -161 55 4 1 1091 607 244 46 0 chr5 66388426 66388557 -86148702 + B1F SINE Alu 13 149 0 1 1091 3408 129 17 0 chr5 66388846 66389366 -86147893 - ORR1A4-int LTR MaLR -1434 529 1 1 1091 1656 174 48 19 chr5 66389366 66389682 -86147577 - ORR1A4 LTR MaLR 0 329 5 1 1091 277 284 19 112 chr5 66389686 66389793 -86147466 + MTE2a LTR MaLR 116 212 -167 1 1091 762 277 0 0 chr5 66389822 66389981 -86147278 - B3A SINE B2 -38 160 2 1 1091 1415 76 11 5 chr5 66390916 66391102 -86146157 - B2_Mm1t SINE B2 -6 187 1 1 1091 239 167 0 69 chr5 66391111 66391169 -86146090 - PB1D10 SINE Alu -1 116 63 1 1091 1076 82 7 7 chr5 66392873 66393020 -86144239 + B1_Mus2 SINE Alu 1 147 0 1 1091 189 107 0 0 chr5 66393020 66393048 -86144211 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1091 522 0 0 0 chr5 66393139 66393197 -86144062 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1091 355 264 149 37 chr5 66393236 66393370 -86143889 - B1F1 SINE Alu 0 149 1 1 1091 759 191 0 0 chr5 66393558 66393715 -86143544 + (TG)n Simple_repeat Simple_repeat 1 157 0 1 1091 235 273 96 71 chr5 66393715 66394038 -86143221 + RLTR21 LTR ERVK 1097 1427 -145 1 1091 1309 14 0 0 chr5 66394272 66394419 -86142840 - B1_Mm SINE Alu 0 147 1 1 1091 225 169 16 33 chr5 66394522 66394583 -86142676 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 1 1091 251 0 59 0 chr5 66394637 66394671 -86142588 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1 1091 738 199 20 14 chr5 66394707 66394855 -86142404 + B1_Mur2 SINE Alu 1 149 0 1 1091 265 61 0 0 chr5 66394855 66394888 -86142371 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1091 389 141 14 0 chr5 66394888 66394959 -86142300 + GA-rich Low_complexity Low_complexity 4 75 0 1 1091 291 54 0 0 chr5 66395306 66395343 -86141916 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1091 357 263 87 9 chr5 66395689 66395804 -86141455 - MIR3 SINE MIR -3 205 82 1 1091 192 125 0 0 chr5 66396109 66396141 -86141118 + (TGGGGG)n Simple_repeat Simple_repeat 3 34 0 1 1091 263 309 15 143 chr5 66397097 66397140 -86140119 + B4 SINE B4 17 187 -105 1 1091 318 268 0 196 chr5 66397140 66397181 -86140078 + MT2B LTR ERVL 129 251 -350 1 1091 612 85 0 161 chr5 66397181 66397293 -86139966 + B1_Mus1 SINE Alu 4 97 -51 1 1091 993 153 0 0 chr5 66397297 66397473 -86139786 + GA-rich Low_complexity Low_complexity 3 178 0 1 1091 1127 90 5 0 chr5 66397484 66397707 -86139552 + (GAA)n Simple_repeat Simple_repeat 1 224 0 1 1091 1513 62 0 10 chr5 66397718 66397914 -86139345 + B2_Mm2 SINE B2 2 195 0 1 1091 1183 61 0 0 chr5 66397965 66398112 -86139147 + B1_Mus2 SINE Alu 1 147 0 1 1091 745 148 281 12 chr5 66398139 66398310 -86138949 + URR1A DNA MER1_type 1 217 -9 1 1091 387 228 20 98 chr5 66398387 66398489 -86138770 + PB1 SINE Alu 27 120 -7 1 1091 222 161 91 61 chr5 66398510 66398576 -86138683 + BC1_Mm scRNA scRNA 32 99 -53 1 1091 212 114 57 0 chr5 66398614 66398649 -86138610 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 1 1091 1584 37 21 0 chr5 66398735 66398924 -86138335 - B2_Mm1t SINE B2 0 193 1 1 1091 345 240 0 6 chr5 66398925 66398940 -86138319 - ID4 SINE ID -48 104 57 1 1091 324 212 0 43 chr5 66398940 66399009 -86138250 - ID SINE ID -136 88 23 1 1091 345 240 0 6 chr5 66399009 66399021 -86138238 - ID4 SINE ID -48 56 11 1 1091 249 98 0 0 chr5 66399308 66399349 -86137910 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1091 753 145 8 0 chr5 66399441 66399565 -86137694 - B1_Mur4 SINE Alu -20 130 6 1 1091 27 0 0 0 chr5 66399565 66399592 -86137667 + AT_rich Low_complexity Low_complexity 1 27 0 1 1091 237 333 62 0 chr5 66399624 66399753 -86137506 + L1MB5 LINE L1 4291 4427 -1713 1 1091 631 251 55 92 chr5 66399870 66400206 -86137053 + RMER2 LTR ERV1 4 425 -142 1 1091 324 298 162 59 chr5 66400672 66400975 -86136284 + MLT1A LTR MaLR 41 374 0 1 1091 230 333 0 0 chr5 66401016 66401079 -86136180 + ID4 SINE ID 2 64 -19 1 1091 311 272 0 58 chr5 66401100 66401186 -86136073 + L1MB5 LINE L1 4980 5060 -1086 1 1091 317 255 59 39 chr5 66401357 66401459 -86135800 + ID_B1 SINE B4 109 212 -12 1 1091 1242 94 66 6 chr5 66401560 66401741 -86135518 + B2_Mm2 SINE B2 2 193 -2 1 1091 1120 289 106 52 chr5 66401855 66401866 -86135393 + L1MB5 LINE L1 5397 5407 -767 1 1091 1844 142 27 45 chr5 66401866 66401917 -86135342 - ORR1A3 LTR MaLR 0 326 288 1 1091 1376 95 11 0 chr5 66401917 66402106 -86135153 - B2_Mm1t SINE B2 -1 192 2 1 1091 1844 142 27 45 chr5 66402106 66402386 -86134873 - ORR1A3 LTR MaLR -39 287 1 1 1091 1120 289 106 52 chr5 66402386 66403112 -86134147 + L1MB5 LINE L1 5408 6174 0 1 1091 757 297 90 37 chr5 66403327 66403557 -86133702 + MTEb LTR MaLR 2 240 -139 1 1091 1140 109 54 0 chr5 66403557 66403584 -86133675 - B2_Mm2 SINE B2 0 195 159 1 1091 624 59 0 0 chr5 66403584 66403669 -86133590 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 1 1091 1140 109 54 0 chr5 66403669 66403825 -86133434 - B2_Mm2 SINE B2 -37 158 3 1 1091 757 304 95 41 chr5 66403825 66403952 -86133307 + MTEb LTR MaLR 241 379 0 1 1091 434 185 0 0 chr5 66404241 66404306 -86132953 - B3 SINE B2 -151 65 1 1 1091 1416 56 56 0 chr5 66404317 66404497 -86132762 - B2_Mm1a SINE B2 -2 191 2 1 1091 207 100 0 0 chr5 66404634 66404664 -86132595 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 1 1091 230 323 0 50 chr5 66405065 66405166 -86132093 - MamRep488 DNA hAT -87 132 37 1 1091 304 143 0 0 chr5 66405186 66405249 -86132010 - L1_Mus3 LINE L1 -2 6636 6574 1 1091 268 303 33 33 chr5 66406064 66406156 -86131103 - MT2B LTR ERVL -346 255 164 1 1091 616 27 0 0 chr5 66406194 66406267 -86130992 - B1_Mm SINE Alu -18 129 57 1 1091 226 152 164 33 chr5 66406225 66406286 -86130973 - RLTR25A LTR ERVK -531 572 504 1 1091 189 0 0 0 chr5 66406492 66406513 -86130746 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1091 1182 50 0 0 chr5 66406513 66406654 -86130605 - B1_Mus2 SINE Alu -3 144 4 1 1091 29 28 0 0 chr5 66406758 66406794 -86130465 + AT_rich Low_complexity Low_complexity 1 36 0 1 1091 201 286 56 28 chr5 66406860 66406932 -86130327 - MIR SINE MIR -169 93 20 1 1091 878 161 0 0 chr5 66407073 66407216 -86130043 - URR1B DNA MER1_type 0 225 83 1 1091 561 186 9 26 chr5 66407259 66407375 -86129884 + RMER17C LTR ERVK 1 114 -296 1 1091 816 57 0 0 chr5 66407363 66407468 -86129791 - B1_Mm SINE Alu 0 147 43 1 1091 31 26 0 0 chr5 66408146 66408184 -86129075 + AT_rich Low_complexity Low_complexity 1 38 0 1 1091 23 33 0 0 chr5 66408457 66408487 -86128772 + AT_rich Low_complexity Low_complexity 1 30 0 1 1091 186 43 0 0 chr5 66408860 66408883 -86128376 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1091 212 59 0 29 chr5 66409554 66409589 -86127670 + (CGGGG)n Simple_repeat Simple_repeat 5 38 0 1 1091 181 0 0 65 chr5 66409711 66409742 -86127517 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1091 180 0 0 0 chr5 66409988 66410008 -86127251 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1091 225 0 0 0 chr5 66410247 66410272 -86126987 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1091 311 302 57 25 chr5 66411069 66411191 -86126068 + HAL1N1_MD LINE L1 6447 6572 -1 1 1091 1366 88 0 35 chr5 66411317 66411517 -86125742 - B2_Mm2 SINE B2 0 195 3 1 1091 212 280 0 39 chr5 66411522 66411574 -86125685 - ID4_ SINE ID 0 83 34 1 1091 27 49 0 0 chr5 66411595 66411636 -86125623 + AT_rich Low_complexity Low_complexity 1 41 0 1 1091 498 281 8 15 chr5 66411638 66411768 -86125491 - ID_B1 SINE B4 -3 221 93 1 1091 457 252 29 71 chr5 66411769 66411921 -86125338 - ID_B1 SINE B4 -35 257 108 1 1091 259 270 31 92 chr5 66412083 66412181 -86125078 + MT2B LTR ERVL 149 240 -361 1 1091 603 188 111 0 chr5 66412111 66412228 -86125031 + B1_Mur1 SINE Alu 10 139 -10 1 1091 468 235 137 0 chr5 66412228 66412330 -86124929 - B3A SINE B2 -81 117 2 1 1091 324 120 0 0 chr5 66413285 66413335 -86123924 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1091 387 232 140 18 chr5 66413379 66413493 -86123766 - RSINE1 SINE B4 -24 141 14 1 1091 264 30 0 0 chr5 66413591 66413624 -86123635 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1091 204 135 0 0 chr5 66413903 66413940 -86123319 + (CAG)n Simple_repeat Simple_repeat 3 39 0 1 1091 405 0 0 0 chr5 66414940 66414985 -86122274 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1091 276 102 0 0 chr5 66414988 66415037 -86122222 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 1 1091 1079 56 27 40 chr5 66416776 66416925 -86120334 - B1_Mus2 SINE Alu 0 147 1 1 1091 395 186 43 0 chr5 66417028 66417098 -86120161 - B1F SINE Alu -59 90 18 1 1091 216 0 0 0 chr5 66418956 66418980 -86118279 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 1 1091 372 211 0 0 chr5 66418983 66419040 -86118219 - ID4_ SINE ID -22 61 5 1 1091 187 200 29 0 chr5 66419414 66419449 -86117810 - MIR SINE MIR -207 55 20 1 1091 356 237 56 88 chr5 66419483 66419608 -86117651 - B1F SINE Alu -1 148 28 1 1091 277 229 0 54 chr5 66419642 66419716 -86117543 - PB1D10 SINE Alu 0 117 48 1 1091 1174 89 6 0 chr5 66419897 66420055 -86117204 + B2_Mm1a SINE B2 2 160 -33 1 1091 288 0 0 0 chr5 66420055 66420087 -86117172 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1 1091 200 139 28 0 chr5 66420138 66420174 -86117085 + CT-rich Low_complexity Low_complexity 2 38 0 1 1091 948 75 88 15 chr5 66420177 66420313 -86116946 - B1_Mus2 SINE Alu -1 146 1 1 1091 1099 209 0 28 chr5 66420532 66420744 -86116515 - B3 SINE B2 -9 207 2 1 1091 1195 48 0 13 chr5 66420810 66420959 -86116300 + B1_Mm SINE Alu 1 147 0 1 1091 269 244 48 71 chr5 66421067 66421151 -86116108 + ID4 SINE ID 2 83 0 1 1091 268 312 40 155 chr5 66421151 66421165 -86116094 + ID SINE ID 2 82 -142 1 1091 220 336 117 36 chr5 66421165 66421276 -86115983 + PB1D7 SINE Alu 1 120 0 1 1091 330 342 24 24 chr5 66421328 66421451 -86115808 + MIR SINE MIR 37 159 -103 1 1091 627 251 62 16 chr5 66421484 66421678 -86115581 + ORR1D2 LTR MaLR 168 370 0 1 1091 455 203 4 86 chr5 66421683 66421786 -86115473 - PB1D10 SINE Alu -21 99 1 1 1091 442 278 147 9 chr5 66421945 66422061 -86115198 + RSINE1 SINE B4 6 137 -28 1 1091 890 194 48 5 chr5 66422568 66422755 -86114504 - B3A SINE B2 0 198 4 1 1091 264 381 67 30 chr5 66423105 66423169 -86114090 + MER58A DNA MER1_type 26 96 -128 1 1091 198 0 0 0 chr5 66423169 66423191 -86114068 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 1 1091 264 381 67 30 chr5 66423191 66423291 -86113968 + MER58A DNA MER1_type 97 196 -28 1 1091 528 297 126 52 chr5 66423455 66423725 -86113534 - B4A SINE B4 0 292 3 1 1091 361 262 25 2 chr5 66423756 66423864 -86113395 - B1F SINE Alu -2 118 5 1 1091 198 180 49 0 chr5 66424073 66424134 -86113125 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 1 1091 349 165 29 58 chr5 66424379 66424482 -86112777 + Lx9 LINE L1 7540 7639 -5 1 1091 442 301 19 71 chr5 66424545 66424699 -86112560 + B3A SINE B2 1 146 -52 1 1091 327 105 0 0 chr5 66424717 66424774 -86112485 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1091 258 369 0 112 chr5 66424818 66424943 -86112316 + ID_B1 SINE B4 80 190 -34 1 1091 260 296 0 0 chr5 66424943 66424997 -86112262 + BC1_Mm scRNA scRNA 5 58 -94 1 1091 521 156 136 30 chr5 66425000 66425132 -86112127 + B1_Mus1 SINE Alu 1 146 -2 1 1091 315 0 0 0 chr5 66425138 66425173 -86112086 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1091 297 0 0 0 chr5 66426666 66426699 -86110560 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1091 297 0 0 0 chr5 66426699 66426732 -86110527 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1091 492 62 0 0 chr5 66426729 66426793 -86110466 + (GAA)n Simple_repeat Simple_repeat 3 66 0 1 1091 313 361 0 0 chr5 66427037 66427120 -86110139 + B1F SINE Alu 12 94 -55 1 1091 385 294 18 35 chr5 66428385 66428554 -86108705 - MER20 DNA MER1_type -53 166 1 1 1091 379 252 67 57 chr5 66428692 66428797 -86108462 - PB1D10 SINE Alu -10 107 2 1 1091 473 302 71 45 chr5 66430749 66430936 -86106323 + MER58A DNA MER1_type 6 197 -27 1 1091 498 142 110 42 chr5 66430936 66431054 -86106205 + RLTR15 LTR ERVK 1 126 -233 1 1091 1464 135 0 0 chr5 66431074 66431304 -86105955 - ORR1A2-int LTR MaLR -1733 230 1 1 1091 2374 73 6 25 chr5 66431308 66431633 -86105626 - ORR1A2 LTR MaLR -8 319 1 1 1091 769 145 24 8 chr5 66431769 66431894 -86105365 + B3 SINE B2 4 130 -86 1 1091 405 0 0 0 chr5 66431960 66432005 -86105254 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1 1091 826 283 110 52 chr5 66432540 66433125 -86104134 + Lx9 LINE L1 6853 7470 -3 1 1091 1068 217 14 14 chr5 66433179 66433394 -86103865 + B3 SINE B2 2 216 0 1 1091 544 227 193 0 chr5 66433425 66433569 -86103690 + B3 SINE B2 1 169 -47 1 1091 423 0 0 0 chr5 66433569 66433616 -86103643 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1091 544 227 193 0 chr5 66433616 66433647 -86103612 + B3 SINE B2 170 209 -7 1 1091 1013 74 185 0 chr5 66433651 66433813 -86103446 + B2_Mm2 SINE B2 1 192 -3 1 1091 278 68 45 0 chr5 66433883 66433927 -86103332 + (GAAAA)n Simple_repeat Simple_repeat 3 48 0 1 1091 721 300 158 31 chr5 66435994 66436565 -86100694 + L1MB5 LINE L1 5261 5903 -280 1 1091 373 267 56 28 chr5 66436753 66436861 -86100398 + PB1D10 SINE Alu 5 115 -2 1 1091 313 274 71 16 chr5 66436898 66437024 -86100235 + L1MD LINE L1 3068 3200 -2946 1 1091 454 275 0 18 chr5 66438365 66438476 -86098783 - PB1D10 SINE Alu -3 114 6 1 1091 588 29 0 0 chr5 66438604 66438674 -86098585 + (CCAA)n Simple_repeat Simple_repeat 2 71 0 1 1091 1168 62 7 0 chr5 66438794 66438940 -86098319 + B1_Mus2 SINE Alu 1 147 0 1 1091 351 136 0 0 chr5 66439091 66439150 -86098109 + (A)n Simple_repeat Simple_repeat 1 59 0 1 1091 360 276 0 136 chr5 66439871 66439923 -86097336 + MT2B LTR ERVL 124 154 -447 1 1091 758 139 10 15 chr5 66439923 66440061 -86097198 + B1_Mm SINE Alu 2 149 -1 1 1091 228 143 0 0 chr5 66440343 66440385 -86096874 + (ATG)n Simple_repeat Simple_repeat 1 42 0 1 1091 520 307 45 0 chr5 66440590 66440777 -86096482 - B3 SINE B2 -4 212 10 1 1091 1319 14 0 0 chr5 66441239 66441386 -86095873 + B1_Mm SINE Alu 1 147 0 1 1091 256 350 49 41 chr5 66441487 66441609 -86095650 - B1F1 SINE Alu -20 129 7 1 1091 261 346 58 36 chr5 66443014 66443152 -86094107 - MIR SINE MIR -18 244 104 1 1091 611 0 27 0 chr5 66443211 66443285 -86093974 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 1 1091 432 252 29 19 chr5 66443596 66443701 -86093558 - PB1D7 SINE Alu -13 107 2 1 1091 412 216 44 63 chr5 66444490 66444628 -86092631 + RSINE1 SINE B4 2 141 -24 1 1091 450 53 0 0 chr5 66444628 66444685 -86092574 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1091 412 216 44 63 chr5 66444685 66444704 -86092555 + RSINE1 SINE B4 142 156 -9 1 1091 202 321 65 19 chr5 66446151 66446259 -86091000 + MIR SINE MIR 138 250 -12 1 1091 1314 79 22 22 chr5 66446548 66446729 -86090530 - B2_Mm2 SINE B2 -14 181 1 1 1091 216 0 0 0 chr5 66447015 66447039 -86090220 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1091 351 0 0 0 chr5 66447039 66447077 -86090182 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1091 448 278 118 20 chr5 66447181 66447376 -86089883 + ID_B1 SINE B4 3 216 -8 1 1091 24 0 0 0 chr5 66447666 66447690 -86089569 + AT_rich Low_complexity Low_complexity 1 24 0 1 1091 589 162 50 20 chr5 66447701 66447802 -86089457 + B1_Mur2 SINE Alu 5 108 -41 1 1091 426 262 92 26 chr5 66447851 66448004 -86089255 - RSINE1 SINE B4 0 165 3 1 1091 777 261 30 25 chr5 66448004 66448198 -86089061 + B3 SINE B2 20 214 -2 1 1091 243 0 0 0 chr5 66448616 66448643 -86088616 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1091 642 13 0 0 chr5 66448951 66449026 -86088233 + B2_Mm1t SINE B2 2 76 -117 1 1091 1167 36 0 0 chr5 66449017 66449157 -86088102 + B2_Mm1a SINE B2 34 173 -20 1 1091 732 103 0 0 chr5 66449157 66449264 -86087995 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 1 1091 230 276 20 39 chr5 66449407 66449509 -86087750 - RSINE1 SINE B4 -40 125 26 1 1091 460 314 88 21 chr5 66449518 66449538 -86087721 - ID_B1 SINE B4 -5 219 195 1 1091 288 0 0 0 chr5 66449538 66449570 -86087689 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1091 460 314 88 21 chr5 66449570 66449741 -86087518 - ID_B1 SINE B4 -30 194 15 1 1091 1223 76 35 6 chr5 66449756 66449927 -86087332 - B2_Mm2 SINE B2 -19 176 1 1 1091 673 179 8 0 chr5 66450159 66450276 -86086983 - RSINE1 SINE B4 -37 128 11 1 1091 264 320 13 0 chr5 66450650 66450728 -86086531 + ID4 SINE ID 1 79 -4 1 1091 1180 207 94 24 chr5 66450836 66451099 -86086160 - MTD LTR MaLR 0 419 136 1 1091 1669 152 67 42 chr5 66451099 66451455 -86085804 + ORR1D1 LTR MaLR 1 365 -9 1 1091 319 302 55 16 chr5 66451468 66451596 -86085663 - MTD LTR MaLR -286 133 1 1 1091 473 257 36 9 chr5 66451596 66451699 -86085560 + PB1D10 SINE Alu 12 117 0 1 1091 279 322 24 56 chr5 66451808 66451933 -86085326 - L2a LINE L2 -11 3415 3295 1 1091 290 296 104 22 chr5 66452068 66452194 -86085065 + B1F SINE Alu 2 139 -10 1 1091 249 57 0 0 chr5 66452194 66452229 -86085030 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1091 943 115 28 21 chr5 66452238 66452380 -86084879 + B1_Mur4 SINE Alu 1 143 -7 1 1091 198 0 0 0 chr5 66452381 66452403 -86084856 + (CCAA)n Simple_repeat Simple_repeat 3 24 0 1 1091 284 0 0 27 chr5 66452403 66452440 -86084819 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1 1091 444 73 267 83 chr5 66452560 66452680 -86084579 - B2_Mm2 SINE B2 -7 188 47 1 1091 220 297 51 51 chr5 66452837 66452915 -86084344 + B3A SINE B2 1 78 -120 1 1091 341 223 37 46 chr5 66453042 66453150 -86084109 - PB1D10 SINE Alu -8 109 3 1 1092 370 347 93 15 chr5 66453779 66453984 -86083275 - MIRb SINE MIR -35 233 13 1 1092 372 257 8 29 chr5 66454233 66454343 -86082916 + B1F1 SINE Alu 35 148 0 1 1092 411 295 68 48 chr5 66454780 66454926 -86082333 + B3A SINE B2 1 149 -49 1 1092 453 235 18 92 chr5 66454928 66455092 -86082167 + ORR1E LTR MaLR 208 359 0 1 1092 408 304 102 59 chr5 66455271 66455663 -86081596 + L1MB5 LINE L1 3775 4183 -1963 1 1092 262 211 0 0 chr5 66455794 66455846 -86081413 + RSINE1 SINE B4 76 127 -38 1 1092 582 248 76 8 chr5 66455964 66456231 -86081028 + L1MB5 LINE L1 5207 5485 -686 1 1092 306 206 158 40 chr5 66456230 66456281 -86080978 + Lx4B LINE L1 6879 6945 -113 1 1092 387 0 0 0 chr5 66456281 66456324 -86080935 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1092 324 0 0 0 chr5 66456324 66456359 -86080900 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1092 306 206 158 40 chr5 66456359 66456407 -86080852 + Lx4B LINE L1 6946 6990 -68 1 1092 308 352 63 8 chr5 66456440 66456566 -86080693 + L1MB5 LINE L1 5471 5603 -575 1 1092 1179 74 0 0 chr5 66456568 66456716 -86080543 + B1_Mus1 SINE Alu 1 148 0 1 1092 500 292 103 23 chr5 66456835 66457098 -86080161 + B4A SINE B4 1 284 -8 1 1092 326 227 128 76 chr5 66457106 66457299 -86079960 + L1MB5 LINE L1 5647 5851 -323 1 1092 450 0 0 0 chr5 66457303 66457353 -86079906 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1092 876 58 175 0 chr5 66457370 66457490 -86079769 - B1_Mus1 SINE Alu -6 142 2 1 1092 489 260 19 32 chr5 66457637 66457792 -86079467 + B3A SINE B2 16 168 -30 1 1092 24 32 0 0 chr5 66457918 66457949 -86079310 + AT_rich Low_complexity Low_complexity 1 31 0 1 1092 398 110 123 57 chr5 66457976 66458082 -86079177 - Lx4A LINE L1 -1 7057 6945 1 1092 207 0 0 0 chr5 66458440 66458463 -86078796 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 1 1092 293 296 12 12 chr5 66458959 66459041 -86078218 + MIRb SINE MIR 24 105 -163 1 1092 246 191 21 0 chr5 66459447 66459494 -86077765 - ID_B1 SINE B4 -7 217 170 1 1092 219 153 320 40 chr5 66459494 66459512 -86077747 - PB1D7 SINE Alu 0 90 25 1 1092 458 167 0 72 chr5 66460101 66460198 -86077061 - MTEa LTR MaLR 0 379 290 1 1092 378 0 0 0 chr5 66460201 66460243 -86077016 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1092 455 191 8 68 chr5 66460514 66460632 -86076627 + B3A SINE B2 84 194 -4 1 1092 180 0 0 0 chr5 66460719 66460739 -86076520 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1092 1077 206 25 0 chr5 66461773 66461977 -86075282 + B3 SINE B2 2 210 -6 1 1092 495 0 0 0 chr5 66462117 66462172 -86075087 + (TATG)n Simple_repeat Simple_repeat 2 56 0 1 1092 504 0 0 0 chr5 66462253 66462309 -86074950 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1092 1658 36 0 0 chr5 66462539 66462732 -86074527 + B2_Mm1a SINE B2 1 193 0 1 1092 464 229 192 39 chr5 66462785 66462967 -86074292 - B3 SINE B2 -6 210 1 1 1092 575 225 71 14 chr5 66463240 66463380 -86073879 + B1_Mur1 SINE Alu 2 149 0 1 1092 602 226 190 16 chr5 66463530 66463714 -86073545 - B3 SINE B2 0 216 1 1 1092 1270 100 10 31 chr5 66463898 66464094 -86073165 + B2_Mm1t SINE B2 2 193 0 1 1092 442 241 62 9 chr5 66464125 66464238 -86073021 - PB1D9 SINE Alu -1 119 1 1 1092 565 170 18 45 chr5 66464268 66464379 -86072880 + PB1D9 SINE Alu 3 110 -10 1 1092 331 224 172 78 chr5 66464875 66464991 -86072268 + B1F SINE Alu 23 149 0 1 1092 409 291 89 7 chr5 66465699 66465834 -86071425 + B1F1 SINE Alu 4 149 0 1 1092 800 256 23 28 chr5 66465837 66466054 -86071205 + B3 SINE B2 1 216 0 1 1092 377 301 146 29 chr5 66466081 66466251 -86071008 + B4A SINE B4 21 210 -82 1 1092 491 237 44 5 chr5 66466251 66466395 -86070864 + ORR1D1 LTR MaLR 1 140 -234 1 1092 517 295 121 0 chr5 66466408 66466574 -86070685 - B3 SINE B2 -11 205 20 1 1092 427 206 35 53 chr5 66466583 66466696 -86070563 + ORR1D1 LTR MaLR 140 250 -109 1 1092 279 0 0 0 chr5 66466733 66466764 -86070495 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1092 322 365 51 0 chr5 66467136 66467292 -86069967 + MIRb SINE MIR 89 252 -16 1 1092 367 233 225 7 chr5 66467572 66467723 -86069536 - B3A SINE B2 -13 185 2 1 1092 311 292 43 43 chr5 66468487 66468580 -86068679 + RSINE1 SINE B4 55 147 -18 1 1092 229 242 38 104 chr5 66468926 66469032 -86068227 + LTR41 LTR ERVL 166 264 -504 1 1092 22 0 0 0 chr5 66469228 66469250 -86068009 + AT_rich Low_complexity Low_complexity 1 22 0 1 1092 337 242 73 0 chr5 66469483 66469590 -86067669 + PB1D7 SINE Alu 1 115 -5 1 1092 303 161 0 0 chr5 66469653 66469709 -86067550 + (TGGA)n Simple_repeat Simple_repeat 2 57 0 1 1092 497 261 107 8 chr5 66469758 66469889 -86067370 - Lx7 LINE L1 -865 6831 6688 1 1092 356 321 0 85 chr5 66469906 66469952 -86067307 + ID_B1 SINE B4 56 195 -29 1 1092 423 299 9 0 chr5 66469952 66470059 -86067200 + B1F SINE Alu 10 117 -32 1 1092 398 293 88 116 chr5 66470050 66470081 -86067178 + B4 SINE B4 53 139 -153 1 1092 657 243 1 18 chr5 66470081 66470225 -86067034 + B1_Mur1 SINE Alu 5 144 -5 1 1092 326 196 127 136 chr5 66470231 66470349 -86066910 + PB1D10 SINE Alu 1 117 0 1 1092 537 177 132 39 chr5 66470819 66470948 -86066311 - B1_Mur3 SINE Alu -8 141 1 1 1092 198 0 0 0 chr5 66471425 66471447 -86065812 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1092 233 330 34 25 chr5 66473237 66473355 -86063904 + MIRb SINE MIR 57 175 -93 1 1092 293 276 34 103 chr5 66474173 66474290 -86062969 - B1F SINE Alu -1 148 40 1 1092 250 156 152 25 chr5 66474526 66474605 -86062654 + PB1 SINE Alu 39 127 0 1 1092 285 290 0 0 chr5 66474617 66474686 -86062573 + B4A SINE B4 84 152 -140 1 1092 497 252 19 0 chr5 66474630 66474737 -86062522 + PB1D7 SINE Alu 12 120 0 1 1092 562 247 57 31 chr5 66474757 66474949 -86062310 - B3 SINE B2 -19 197 1 1 1092 608 246 56 7 chr5 66474983 66475126 -86062133 + RSINE1 SINE B4 8 157 -8 1 1092 354 23 0 0 chr5 66475185 66475228 -86062031 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1092 1358 90 32 0 chr5 66475236 66475424 -86061835 + B2_Mm2 SINE B2 1 194 -1 1 1092 237 288 100 0 chr5 66476226 66476306 -86060953 - PB1D9 SINE Alu 0 120 33 1 1092 1298 292 142 16 chr5 66476827 66477342 -86059917 + Charlie1a DNA MER1_type 393 972 -483 1 1092 452 158 0 0 chr5 66477394 66477470 -86059789 + HAL1-3A_ME LINE L1 1948 2023 -835 1 1092 270 73 0 0 chr5 66477472 66477513 -86059746 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1 1092 315 0 0 0 chr5 66477580 66477615 -86059644 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1092 658 289 93 38 chr5 66477623 66477860 -86059399 + B4A SINE B4 41 290 -2 1 1092 302 239 0 6 chr5 66477864 66478020 -86059239 + (CA)n Simple_repeat Simple_repeat 1 155 0 1 1092 607 213 178 1 chr5 66478166 66478354 -86058905 + B3A SINE B2 1 215 -1 1 1092 262 179 87 109 chr5 66478580 66478653 -86058606 - MER53 DNA hAT -42 151 72 1 1092 1216 63 71 44 chr5 66478653 66478836 -86058423 - B2_Mm2 SINE B2 -7 188 1 1 1092 262 179 87 109 chr5 66478836 66478900 -86058359 - MER53 DNA hAT -122 71 17 1 1092 690 208 0 0 chr5 66478979 66479104 -86058155 - ID_B1 SINE B4 -1 223 99 1 1092 31 0 0 0 chr5 66479122 66479153 -86058106 + AT_rich Low_complexity Low_complexity 1 31 0 1 1092 999 112 28 0 chr5 66479153 66479296 -86057963 - B1_Mus1 SINE Alu 0 148 2 1 1092 293 168 106 29 chr5 66479300 66479404 -86057855 - Lx9 LINE L1 0 7644 7533 1 1092 369 0 0 0 chr5 66479426 66479467 -86057792 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1092 397 260 105 48 chr5 66479551 66479656 -86057603 - PB1D7 SINE Alu -8 112 2 1 1092 333 62 0 0 chr5 66479977 66480025 -86057234 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1092 276 185 0 0 chr5 66480588 66480642 -86056617 + T-rich Low_complexity Low_complexity 1 54 0 1 1092 698 220 94 44 chr5 66480652 66480833 -86056426 - B3A SINE B2 -25 191 2 1 1092 338 173 13 0 chr5 66480886 66480961 -86056298 + CT-rich Low_complexity Low_complexity 1 76 0 1 1092 337 194 107 40 chr5 66481795 66481870 -86055389 + B1F1 SINE Alu 68 147 -2 1 1092 299 249 4 40 chr5 66481911 66482002 -86055257 - MER58C DNA MER1_type -9 206 117 1 1092 373 329 22 84 chr5 66482027 66482206 -86055053 + B4A SINE B4 3 170 -122 1 1092 218 192 19 0 chr5 66482311 66482363 -86054896 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 1 1092 364 267 249 37 chr5 66482377 66482618 -86054641 + B4A SINE B4 1 292 0 1 1092 585 28 0 0 chr5 66482635 66482706 -86054553 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1092 1326 93 33 0 chr5 66482958 66483141 -86054118 - B2_Mm2 SINE B2 -5 190 2 1 1092 257 257 81 0 chr5 66483148 66483222 -86054037 - B1F SINE Alu -3 146 67 1 1092 595 268 8 0 chr5 66483474 66483597 -86053662 - ID_B1 SINE B4 -10 214 91 1 1092 334 343 0 0 chr5 66483613 66483721 -86053538 - PB1D10 SINE Alu 0 117 10 1 1092 266 314 0 23 chr5 66483644 66483732 -86053527 - ID_B1 SINE B4 -57 167 82 1 1092 195 188 0 0 chr5 66483803 66483851 -86053408 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1092 204 182 0 0 chr5 66483858 66483891 -86053368 + MIR SINE MIR 224 256 -6 1 1092 306 278 0 14 chr5 66484428 66484501 -86052758 - ID4 SINE ID -4 79 8 1 1092 312 279 82 44 chr5 66484875 66485010 -86052249 + YREP_Mm Unknown Unknown 167 306 -1506 1 1092 991 247 5 34 chr5 66484902 66485041 -86052218 - ID_B1 SINE B4 -23 201 68 1 1092 2239 126 76 3 chr5 66485041 66485408 -86051851 - ORR1B1 LTR MaLR 0 394 1 1 1092 991 247 5 34 chr5 66485408 66485473 -86051786 - ID SINE ID -157 67 3 1 1092 1264 81 35 0 chr5 66485772 66485944 -86051315 + B2_Mm2 SINE B2 2 179 -16 1 1092 702 0 0 0 chr5 66485946 66486024 -86051235 + (GAA)n Simple_repeat Simple_repeat 2 79 0 1 1092 1250 41 0 0 chr5 66486024 66486170 -86051089 + B1_Mus1 SINE Alu 3 148 0 1 1092 1347 72 0 0 chr5 66486184 66486364 -86050895 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 1 1092 547 231 65 0 chr5 66486776 66486884 -86050375 + RSINE1 SINE B4 34 148 -17 1 1092 201 39 0 0 chr5 66487085 66487111 -86050148 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1092 571 275 101 0 chr5 66487114 66487263 -86049996 - ID_B1 SINE B4 0 224 61 1 1092 753 142 11 17 chr5 66487769 66487948 -86049311 + CT-rich Low_complexity Low_complexity 1 178 0 1 1092 285 29 0 0 chr5 66487948 66487982 -86049277 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1092 659 218 141 16 chr5 66488618 66488809 -86048450 + B3 SINE B2 2 216 0 1 1092 316 247 42 31 chr5 66489094 66489190 -86048069 + ID_B1 SINE B4 72 168 -56 1 1092 540 147 53 0 chr5 66489108 66489203 -86048056 + B1_Mur3 SINE Alu 9 108 -41 1 1092 238 265 89 133 chr5 66489112 66489247 -86048012 + MT2B LTR ERVL 177 305 -296 1 1092 527 277 98 49 chr5 66490001 66490200 -86047059 + MLT1B LTR MaLR 31 239 -151 1 1092 631 212 76 0 chr5 66490200 66490332 -86046927 + RSINE1 SINE B4 3 144 -21 1 1092 294 354 26 0 chr5 66490380 66490493 -86046766 + MLT1B LTR MaLR 274 389 -1 1 1092 247 250 15 30 chr5 66491432 66491498 -86045761 + GA-rich Low_complexity Low_complexity 4 68 0 1 1092 403 210 55 91 chr5 66491519 66491629 -86045630 - ID_B1 SINE B4 -23 201 96 1 1092 272 291 0 37 chr5 66492158 66492240 -86045019 + PB1D10 SINE Alu 20 98 -19 1 1092 312 295 96 87 chr5 66492247 66492274 -86044985 + B4A SINE B4 61 87 -205 1 1092 330 26 0 0 chr5 66492274 66492313 -86044946 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1092 312 295 96 87 chr5 66492313 66492515 -86044744 + B4A SINE B4 88 292 0 1 1092 594 198 0 0 chr5 66492517 66492689 -86044570 + (CA)n Simple_repeat Simple_repeat 1 172 0 1 1092 279 122 0 0 chr5 66492703 66492752 -86044507 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1092 419 229 132 25 chr5 66493478 66493599 -86043660 + ID_B1 SINE B4 91 224 0 1 1092 238 279 36 71 chr5 66493703 66493815 -86043444 - MT2B2 LTR ERVL -279 305 198 1 1092 584 248 0 32 chr5 66493725 66493850 -86043409 - ID_B1 SINE B4 -17 207 87 1 1092 436 179 59 12 chr5 66493878 66493963 -86043296 - B3 SINE B2 0 216 128 1 1092 361 83 0 0 chr5 66493977 66494025 -86043234 - B3 SINE B2 -133 83 36 1 1092 230 268 89 0 chr5 66493980 66494036 -86043223 - B4 SINE B4 -212 80 20 1 1092 483 18 0 0 chr5 66494036 66494092 -86043167 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1092 274 256 11 23 chr5 66494200 66494288 -86042971 + B4 SINE B4 2 88 -204 1 1092 411 340 0 47 chr5 66495156 66495304 -86041955 - ID_B1 SINE B4 0 224 84 1 1092 252 275 62 12 chr5 66495423 66495504 -86041755 + B1F2 SINE Alu 3 87 -62 1 1092 252 288 128 70 chr5 66495656 66495914 -86041345 + L2c LINE L2 3091 3363 -24 1 1092 513 294 112 4 chr5 66496036 66496285 -86040974 + L1MA8 LINE L1 5662 5937 -354 1 1092 354 247 37 133 chr5 66496396 66496554 -86040705 + PB1D10 SINE Alu 2 147 0 1 1092 561 15 0 0 chr5 66496959 66497025 -86040234 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1092 236 289 0 0 chr5 66497560 66497612 -86039647 + G-rich Low_complexity Low_complexity 6 57 0 1 1092 511 31 0 0 chr5 66497679 66497743 -86039516 + B1_Mm SINE Alu 84 147 0 1 1092 252 286 19 67 chr5 66497791 66497896 -86039363 + PB1D7 SINE Alu 1 100 -20 1 1092 402 69 0 0 chr5 66498088 66498146 -86039113 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1092 21 0 0 0 chr5 66498307 66498328 -86038931 + AT_rich Low_complexity Low_complexity 1 21 0 1 1092 2357 159 29 21 chr5 66498832 66499250 -86038009 - MTC LTR MaLR 0 421 1 1 1092 384 22 0 0 chr5 66499300 66499345 -86037914 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1092 404 185 111 0 chr5 66499506 66499587 -86037672 + PB1D7 SINE Alu 24 113 -7 1 1092 234 273 11 115 chr5 66499518 66499605 -86037654 + MT2B LTR ERVL 194 271 -330 1 1092 206 314 136 32 chr5 66499771 66499896 -86037363 + MIRc SINE MIR 2 139 -129 1 1092 742 286 97 0 chr5 66500170 66500366 -86036893 + B3 SINE B2 2 216 0 1 1092 1422 86 11 0 chr5 66500491 66500678 -86036581 + B2_Mm2 SINE B2 2 190 -5 2 1092 260 27 27 0 chr5 66501051 66501088 -86036171 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 1092 2546 56 78 0 chr5 66501102 66501423 -86035836 + ORR1A1 LTR MaLR 1 346 0 4 1092 1166 61 0 7 chr5 66501605 66501754 -86035505 + B1_Mus1 SINE Alu 1 148 0 5 1092 379 259 210 0 chr5 66501859 66502002 -86035257 + MER20 DNA MER1_type 30 202 -17 6 1092 21 36 0 0 chr5 66502821 66502849 -86034410 + AT_rich Low_complexity Low_complexity 1 28 0 7 1092 380 331 42 48 chr5 66502991 66503156 -86034103 + RSINE1 SINE B4 2 165 0 8 1092 212 206 36 6 chr5 66503191 66503273 -86033986 - MIRb SINE MIR -101 167 79 9 1092 234 133 56 167 chr5 66503788 66503860 -86033399 - B1_Mur1 SINE Alu -7 142 79 1 1092 372 264 0 21 chr5 66503927 66504020 -86033239 - B3A SINE B2 -107 91 1 1 1092 514 253 238 36 chr5 66504409 66504577 -86032682 - B3 SINE B2 -14 202 1 1 1092 233 354 44 9 chr5 66504580 66504694 -86032565 - MIRc SINE MIR -128 140 23 1 1092 458 192 181 16 chr5 66504762 66504889 -86032370 - B1_Mur2 SINE Alu 0 149 2 1 1092 542 232 0 9 chr5 66504929 66505042 -86032217 + B3 SINE B2 15 126 -90 1 1092 832 143 12 87 chr5 66505147 66505308 -86031951 + B1_Mur4 SINE Alu 2 150 0 1 1092 201 94 0 0 chr5 66505309 66505341 -86031918 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 1 1092 432 0 0 0 chr5 66506540 66506588 -86030671 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1 1092 426 260 0 48 chr5 66506773 66506878 -86030381 - ID_B1 SINE B4 -4 220 121 1 1092 223 146 36 0 chr5 66507392 66507447 -86029812 + (TAA)n Simple_repeat Simple_repeat 1 57 0 2 1092 56 83 0 0 chr5 66507465 66507598 -86029661 + AT_rich Low_complexity Low_complexity 1 133 0 2 1092 26 50 0 0 chr5 66507634 66507674 -86029585 + AT_rich Low_complexity Low_complexity 1 40 0 2 1092 343 306 10 39 chr5 66507692 66507794 -86029465 + ID_B1 SINE B4 78 176 -48 2 1092 314 303 41 113 chr5 66507712 66507818 -86029441 + PB1D10 SINE Alu 13 116 -1 2 1092 1260 96 11 0 chr5 66507818 66507995 -86029264 + B2_Mm1a SINE B2 2 180 -13 2 1092 222 301 42 127 chr5 66507995 66508018 -86029241 + B1_Mur2 SINE Alu 114 133 -16 2 1092 358 84 346 9 chr5 66508007 66508114 -86029145 + B2_Mm2 SINE B2 47 189 -6 2 1092 223 302 70 98 chr5 66508152 66508295 -86028964 + B1_Mm SINE Alu 1 139 -8 2 1092 525 248 34 8 chr5 66508389 66508507 -86028752 + RSINE1 SINE B4 16 136 -29 2 1092 354 293 129 2 chr5 66508551 66508704 -86028555 + L1MB5 LINE L1 5887 6055 -129 2 1092 494 264 60 13 chr5 66508716 66508866 -86028393 + RSINE1 SINE B4 4 160 -5 3 1092 216 135 0 0 chr5 66509089 66509126 -86028133 + (TCC)n Simple_repeat Simple_repeat 3 39 0 3 1092 392 220 121 0 chr5 66509133 66509224 -86028035 - B1_Mus2 SINE Alu -45 102 1 3 1092 273 57 0 0 chr5 66509242 66509277 -86027982 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1092 334 330 10 0 chr5 66509314 66509417 -86027842 + U6 snRNA snRNA 1 104 -3 3 1092 824 92 7 21 chr5 66509417 66509561 -86027698 + (GAA)n Simple_repeat Simple_repeat 2 143 0 3 1092 843 178 32 26 chr5 66510001 66510157 -86027102 + B3 SINE B2 2 158 -58 3 1092 423 0 0 0 chr5 66510164 66510211 -86027048 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1092 477 34 0 0 chr5 66510211 66510269 -86026990 + (GA)n Simple_repeat Simple_repeat 2 60 0 3 1092 529 256 11 96 chr5 66510301 66510459 -86026800 + RSINE1 SINE B4 4 146 -19 3 1092 650 75 11 0 chr5 66510459 66510552 -86026707 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 4 1092 529 256 11 96 chr5 66510552 66510570 -86026689 + RSINE1 SINE B4 147 164 -1 3 1092 433 219 12 0 chr5 66510584 66510666 -86026593 + PB1D9 SINE Alu 25 107 -13 4 1092 966 18 0 0 chr5 66510671 66510783 -86026476 + (GGAAA)n Simple_repeat Simple_repeat 3 114 0 4 1092 811 171 29 0 chr5 66510792 66510932 -86026327 + B1_Mur3 SINE Alu 4 147 -2 4 1092 21 36 0 0 chr5 66511049 66511077 -86026182 + AT_rich Low_complexity Low_complexity 1 28 0 4 1092 231 328 22 88 chr5 66511299 66511436 -86025823 - MLT1H LTR MaLR -366 183 56 4 1092 282 253 55 0 chr5 66511447 66511538 -86025721 + L1MB3 LINE L1 5533 5628 -540 4 1092 543 31 0 0 chr5 66511625 66511690 -86025569 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 4 1092 363 210 105 40 chr5 66511693 66511817 -86025442 + L1MB3 LINE L1 5771 5902 -281 4 1092 279 0 0 0 chr5 66511819 66511850 -86025409 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1092 349 306 25 15 chr5 66511854 66511976 -86025283 + PB1D10 SINE Alu 1 128 -21 4 1092 371 259 0 0 chr5 66512101 66512182 -86025077 + L1MB3 LINE L1 6057 6137 -46 4 1092 533 296 33 0 chr5 66512187 66512339 -86024920 + RSINE1 SINE B4 1 157 -8 5 1092 267 220 119 0 chr5 66512400 66512459 -86024800 + ID4_ SINE ID 1 66 -17 5 1092 398 268 30 59 chr5 66512599 66512670 -86024589 + ID_B1 SINE B4 91 158 -66 5 1092 1177 173 198 41 chr5 66512670 66512989 -86024270 + ORR1D2 LTR MaLR 1 369 -1 5 1092 398 268 30 59 chr5 66512989 66513052 -86024207 + ID_B1 SINE B4 159 221 -3 5 1092 485 209 0 24 chr5 66513146 66513313 -86023946 + (CA)n Simple_repeat Simple_repeat 1 163 0 5 1092 201 308 45 15 chr5 66513313 66513379 -86023880 - MER5A DNA MER1_type -53 136 69 5 1092 279 79 0 0 chr5 66514275 66514313 -86022946 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1092 1228 54 0 0 chr5 66514317 66514465 -86022794 - B1_Mus1 SINE Alu 0 148 1 5 1092 339 113 0 0 chr5 66514578 66514640 -86022619 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1092 246 276 77 112 chr5 66514930 66515073 -86022186 - MT2B LTR ERVL -285 316 179 5 1092 744 179 0 31 chr5 66514947 66515074 -86022185 - B1_Mur2 SINE Alu -13 136 14 6 1092 308 295 84 28 chr5 66514982 66515125 -86022134 - B4A SINE B4 -98 194 44 6 1092 378 222 50 20 chr5 66515632 66515733 -86021526 - MER58B DNA MER1_type -162 179 76 6 1092 1099 91 0 14 chr5 66515736 66515881 -86021378 + B1_Mus2 SINE Alu 5 147 0 6 1092 715 198 6 12 chr5 66515885 66516054 -86021205 + GA-rich Low_complexity Low_complexity 2 169 0 6 1092 656 265 8 72 chr5 66516058 66516294 -86020965 + ID_B1 SINE B4 2 222 -2 6 1092 274 254 28 0 chr5 66516304 66516375 -86020884 + ID4 SINE ID 2 74 -9 6 1092 469 237 41 48 chr5 66516852 66516998 -86020261 + B1F2 SINE Alu 2 146 -3 6 1092 482 338 7 7 chr5 66516998 66517144 -86020115 + RSINE1 SINE B4 9 154 -11 6 1092 386 238 139 0 chr5 66517331 66517432 -86019827 - B1_Mur1 SINE Alu -34 115 1 6 1092 246 216 39 19 chr5 66517614 66517666 -86019593 + ID4 SINE ID 5 57 -26 7 1092 1394 34 11 0 chr5 66518008 66518183 -86019076 + (TTCCC)n Simple_repeat Simple_repeat 3 179 0 7 1092 198 171 0 0 chr5 66518186 66518227 -86019032 + CT-rich Low_complexity Low_complexity 3 43 0 7 1092 620 209 36 22 chr5 66518239 66518376 -86018883 - B1_Mur4 SINE Alu -6 144 6 7 1092 590 196 9 27 chr5 66518662 66518772 -86018487 + PB1D10 SINE Alu 1 108 -9 7 1092 461 188 220 8 chr5 66518773 66518891 -86018368 + B1_Mur1 SINE Alu 5 147 -2 7 1092 190 274 47 31 chr5 66518938 66519002 -86018257 + MIR SINE MIR 93 157 -105 7 1092 218 333 26 13 chr5 66519038 66519114 -86018145 + L3 LINE CR1 4392 4468 -21 7 1092 3138 238 57 70 chr5 66519602 66520504 -86016755 + Lx9 LINE L1 6617 7526 -118 7 1092 973 171 193 0 chr5 66520504 66520685 -86016574 + B3 SINE B2 1 216 0 7 1092 3138 238 57 70 chr5 66520685 66520803 -86016456 + Lx9 LINE L1 7527 7623 -21 7 1092 732 194 28 0 chr5 66520813 66520957 -86016302 - B1_Mus1 SINE Alu 0 148 1 8 1092 916 254 29 24 chr5 66520961 66521167 -86016092 - B3 SINE B2 -4 212 6 8 1092 22 0 0 0 chr5 66521167 66521189 -86016070 + AT_rich Low_complexity Low_complexity 1 22 0 8 1092 1399 91 0 5 chr5 66521198 66521385 -86015874 + B2_Mm2 SINE B2 1 186 -9 8 1092 347 315 11 0 chr5 66521421 66521510 -86015749 + PB1D10 SINE Alu 1 90 -27 8 1092 605 205 17 0 chr5 66521430 66521544 -86015715 + ID_B1 SINE B4 91 206 -18 8 1092 264 57 0 28 chr5 66521544 66521580 -86015679 + ORR1C1 LTR MaLR 1 35 -349 8 1092 824 29 9 9 chr5 66521592 66521698 -86015561 + B1_Mus2 SINE Alu 42 147 0 8 1092 1836 135 127 63 chr5 66521709 66522041 -86015218 + ORR1C1 LTR MaLR 24 376 -2 8 1092 586 240 91 38 chr5 66522065 66522251 -86015008 + B3A SINE B2 3 198 0 8 1092 330 279 0 11 chr5 66522341 66522428 -86014831 + ID_B1 SINE B4 82 167 -57 8 1092 315 310 20 10 chr5 66522428 66522442 -86014817 + PB1D10 SINE Alu 1 102 -15 9 1092 293 248 61 135 chr5 66522756 66522778 -86014481 + B4 SINE B4 70 79 -213 9 1092 723 140 27 40 chr5 66522778 66522927 -86014332 + B1_Mm SINE Alu 1 147 0 9 1092 941 69 8 0 chr5 66522937 66523067 -86014192 + (GGGA)n Simple_repeat Simple_repeat 2 132 0 9 1092 213 328 15 30 chr5 66523126 66523192 -86014067 + ID4_ SINE ID 19 83 0 9 1092 782 140 80 7 chr5 66523377 66523514 -86013745 + B1_Mur4 SINE Alu 3 149 -1 9 1092 486 301 159 48 chr5 66523728 66523938 -86013321 + B4A SINE B4 1 238 -54 9 1092 1233 48 0 0 chr5 66523938 66524085 -86013174 + B1_Mus1 SINE Alu 2 148 0 9 1092 486 301 159 48 chr5 66524085 66524125 -86013134 + B4A SINE B4 239 278 -14 9 1092 226 275 217 0 chr5 66524381 66524450 -86012809 - RSINE1 SINE B4 -6 159 76 9 1092 183 80 0 0 chr5 66524976 66525001 -86012258 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1092 312 224 171 0 chr5 66525036 66525112 -86012147 + B1_Mm SINE Alu 59 147 0 1 1092 1174 44 12 12 chr5 66525137 66525298 -86011961 + (GAAA)n Simple_repeat Simple_repeat 2 162 0 1 1092 363 44 0 0 chr5 66525307 66525352 -86011907 + (GGGAGA)n Simple_repeat Simple_repeat 5 49 0 1 1092 1327 86 11 0 chr5 66525353 66525527 -86011732 + B2_Mm1t SINE B2 4 179 -14 1 1092 378 138 163 32 chr5 66525574 66525691 -86011568 + B2_Mm2 SINE B2 47 193 0 1 1092 227 173 77 0 chr5 66525752 66525804 -86011455 + ID_B1 SINE B4 131 186 -38 1 1092 488 262 186 0 chr5 66525925 66526070 -86011189 + B3A SINE B2 1 172 -26 1 1092 27 29 0 0 chr5 66526152 66526186 -86011073 + AT_rich Low_complexity Low_complexity 1 34 0 1 1092 305 250 89 50 chr5 66526254 66526355 -86010904 - MER20 DNA MER1_type -8 211 107 1 1092 220 310 159 40 chr5 66526714 66526865 -86010394 + MIRb SINE MIR 99 267 -1 1 1092 183 26 49 49 chr5 66527067 66527108 -86010151 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 1 1092 222 213 21 21 chr5 66527540 66527588 -86009671 + B1F SINE Alu 65 112 -37 1 1092 483 256 84 42 chr5 66528178 66528345 -86008914 - ID_B1 SINE B4 -21 203 30 1 1092 412 237 194 86 chr5 66528382 66528557 -86008702 - B3A SINE B2 0 198 5 1 1092 346 250 0 0 chr5 66528592 66528660 -86008599 - PB1D10 SINE Alu -49 68 1 1 1092 369 294 20 0 chr5 66528857 66528959 -86008300 + PB1D10 SINE Alu 14 117 0 1 1092 417 243 112 37 chr5 66529201 66529308 -86007951 + PB1D10 SINE Alu 1 115 -2 1 1092 243 159 206 0 chr5 66529656 66529719 -86007540 + ID4_ SINE ID 1 76 -7 1 1092 229 318 76 57 chr5 66530285 66530442 -86006817 - L2a LINE L2 0 3426 3228 1 1092 639 277 28 17 chr5 66530442 66530622 -86006637 + B3A SINE B2 1 182 -16 1 1092 249 367 0 0 chr5 66530773 66530852 -86006407 + PB1 SINE Alu 43 121 -6 1 1092 448 302 15 4 chr5 66530833 66530968 -86006291 + ID_B1 SINE B4 6 143 -149 1 1092 308 248 17 87 chr5 66532123 66532238 -86005021 + PB1D10 SINE Alu 10 116 -1 1 1092 2921 150 40 55 chr5 66532536 66533115 -86004144 + RMER15 LTR ERVL 6 575 0 1 1092 1064 101 0 0 chr5 66533711 66533849 -86003410 + B1_Mm SINE Alu 1 138 -9 1 1092 353 44 43 14 chr5 66533849 66533918 -86003341 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 1 1092 479 258 129 0 chr5 66533953 66534077 -86003182 + B1F2 SINE Alu 9 148 -1 1 1092 1134 77 102 34 chr5 66534115 66534291 -86002968 - B2_Mm2 SINE B2 -2 193 6 1 1092 483 266 32 17 chr5 66534302 66534449 -86002810 - B1_Mur4 SINE Alu 0 150 2 1 1092 660 322 102 0 chr5 66534505 66534750 -86002509 + B4A SINE B4 4 273 -19 1 1092 447 19 0 0 chr5 66534762 66534814 -86002445 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1092 230 220 49 33 chr5 66534897 66534958 -86002301 - ID SINE ID -162 62 1 1 1092 322 289 0 0 chr5 66535861 66535937 -86001322 + PB1D7 SINE Alu 38 113 -7 1 1092 231 279 16 16 chr5 66536260 66536322 -86000937 + PB1D10 SINE Alu 24 85 -32 1 1092 246 250 0 45 chr5 66536347 66536414 -86000845 + ID2 SINE ID 4 67 -16 1 1092 270 0 0 0 chr5 66536986 66537016 -86000243 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1092 228 98 19 56 chr5 66537378 66537432 -85999827 + A-rich Low_complexity Low_complexity 2 53 0 1 1092 230 169 13 90 chr5 66537452 66537530 -85999729 + ID4 SINE ID 7 78 -5 1 1092 436 223 68 0 chr5 66537924 66538027 -85999232 + PB1D10 SINE Alu 1 110 -7 1 1092 1248 98 46 0 chr5 66538035 66538208 -85999051 + B2_Mm2 SINE B2 1 181 -14 1 1092 407 126 7 29 chr5 66538255 66538359 -85998900 + B2_Mm2 SINE B2 48 184 -11 1 1092 337 260 0 40 chr5 66538454 66538530 -85998729 + RSINE1 SINE B4 57 129 -36 1 1092 204 125 0 0 chr5 66538560 66538592 -85998667 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1092 445 260 119 40 chr5 66538631 66538807 -85998452 + B3A SINE B2 5 194 -4 1 1092 416 298 17 119 chr5 66538840 66539076 -85998183 + B3A SINE B2 4 215 -1 1 1092 754 177 177 0 chr5 66539086 66539222 -85998037 + B3 SINE B2 1 149 -67 1 1092 393 22 0 0 chr5 66539222 66539268 -85997991 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1092 754 177 177 0 chr5 66539268 66539306 -85997953 + B3 SINE B2 150 205 -11 1 1092 834 103 6 76 chr5 66539334 66539492 -85997767 + B1_Mus2 SINE Alu 1 147 0 1 1092 213 299 0 82 chr5 66539669 66539742 -85997517 + PB1D10 SINE Alu 18 84 -33 1 1092 488 227 51 96 chr5 66540497 66540653 -85996606 - B1F2 SINE Alu 0 149 1 1 1092 225 94 0 0 chr5 66540747 66540779 -85996480 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 1 1092 317 208 75 38 chr5 66540785 66540865 -85996394 - RSINE1 SINE B4 -49 116 34 1 1092 207 0 0 0 chr5 66541318 66541341 -85995918 + (C)n Simple_repeat Simple_repeat 1 23 0 1 1092 324 0 0 0 chr5 66541463 66541499 -85995760 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1092 233 233 186 72 chr5 66543424 66543521 -85993738 + MIRc SINE MIR 18 125 -143 1 1092 1116 54 7 39 chr5 66543779 66543932 -85993327 + B1_Mus1 SINE Alu 1 148 0 1 1092 267 0 70 0 chr5 66543932 66543975 -85993284 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1 1092 244 187 41 18 chr5 66545031 66545096 -85992163 - PB1D10 SINE Alu -25 95 27 1 1092 573 88 0 0 chr5 66545096 66545176 -85992083 + (CACG)n Simple_repeat Simple_repeat 4 83 0 1 1092 762 167 20 34 chr5 66545487 66545636 -85991623 + B1_Mur3 SINE Alu 1 147 -2 1 1092 276 272 198 38 chr5 66545830 66546067 -85991192 + B4 SINE B4 2 276 -16 1 1092 192 77 0 0 chr5 66546075 66546101 -85991158 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1092 304 351 167 0 chr5 66546137 66546311 -85990948 + MIRb SINE MIR 51 253 -15 1 1092 568 217 8 37 chr5 66546739 66546873 -85990386 + B1_Mur2 SINE Alu 2 131 -18 1 1092 253 242 0 75 chr5 66546997 66547107 -85990152 - ID2 SINE ID -41 111 17 1 1092 393 318 90 34 chr5 66548253 66548473 -85988786 - MIR SINE MIR -8 254 36 1 1092 534 262 48 0 chr5 66548586 66548712 -85988547 + B1F SINE Alu 1 132 -17 1 1092 279 298 8 119 chr5 66549078 66549196 -85988063 + PB1D10 SINE Alu 4 108 -9 1 1092 712 225 83 57 chr5 66549208 66549401 -85987858 + B3A SINE B2 1 198 0 1 1092 650 277 27 7 chr5 66549451 66549600 -85987659 - RSINE1 SINE B4 -10 155 4 1 1092 258 280 80 0 chr5 66549727 66549802 -85987457 + B4A SINE B4 87 167 -125 1 1092 357 208 75 28 chr5 66549743 66549863 -85987396 + PB1D10 SINE Alu 18 131 -16 1 1092 387 0 0 0 chr5 66550054 66550097 -85987162 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1092 228 372 103 11 chr5 66550137 66550224 -85987035 - ID_B1 SINE B4 -3 221 127 1 1092 1187 84 30 0 chr5 66550214 66550256 -85987003 - B2_Mm2 SINE B2 -23 172 131 1 1092 288 0 0 0 chr5 66550256 66550288 -85986971 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1092 1187 84 30 0 chr5 66550288 66550411 -85986848 - B2_Mm2 SINE B2 -65 130 3 1 1092 302 279 0 29 chr5 66550414 66550484 -85986775 - ID_B1 SINE B4 -70 154 87 1 1092 186 343 49 69 chr5 66550494 66550638 -85986621 - L2c LINE L2 0 3426 3286 1 1092 189 252 219 61 chr5 66550785 66550899 -85986360 - L2c LINE L2 -282 3105 2974 1 1092 413 277 26 9 chr5 66550977 66551090 -85986169 - PB1D7 SINE Alu -5 115 1 1 1092 1351 111 5 0 chr5 66551107 66551297 -85985962 - B2_Mm2 SINE B2 -4 191 1 1 1092 249 191 0 45 chr5 66551335 66551401 -85985858 + RLTR22_Mur LTR ERVK 1311 1373 -475 1 1092 371 302 48 40 chr5 66551427 66551551 -85985708 - B4A SINE B4 -163 129 5 1 1092 360 222 82 30 chr5 66551574 66551678 -85985581 + PB1D10 SINE Alu 14 117 0 1 1092 291 190 0 0 chr5 66551881 66551939 -85985320 + CT-rich Low_complexity Low_complexity 2 59 0 1 1092 240 316 60 20 chr5 66551942 66552042 -85985217 - PB1D10 SINE Alu -1 116 13 1 1092 335 280 59 20 chr5 66551962 66552064 -85985195 - ID_B1 SINE B4 -46 178 73 1 1092 266 139 13 40 chr5 66552100 66552175 -85985084 + GA-rich Low_complexity Low_complexity 3 75 0 1 1092 403 335 32 59 chr5 66552183 66552350 -85984909 + ID_B1 SINE B4 86 245 -47 1 1092 263 318 47 12 chr5 66552364 66552450 -85984809 - L2c LINE L2 -1 3386 3298 1 1092 1975 142 85 28 chr5 66552815 66552849 -85984410 - RMER15 LTR ERVL 0 575 542 1 1092 324 0 0 0 chr5 66552849 66552885 -85984374 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1092 1975 142 85 28 chr5 66552885 66553213 -85984046 - RMER15 LTR ERVL -34 541 193 1 1092 444 319 24 24 chr5 66553264 66553428 -85983831 + RSINE1 SINE B4 2 165 0 1 1092 633 244 43 64 chr5 66553463 66553651 -85983608 + B3A SINE B2 2 185 -13 1 1092 365 257 0 0 chr5 66553774 66553844 -85983415 - ID4 SINE ID -13 70 1 1 1092 189 94 0 0 chr5 66553849 66553881 -85983378 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 1 1092 806 191 0 0 chr5 66553883 66554014 -85983245 - ID_B1 SINE B4 -6 218 88 1 1092 288 77 0 0 chr5 66554050 66554089 -85983170 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1092 480 35 0 0 chr5 66554089 66554147 -85983112 + (TTG)n Simple_repeat Simple_repeat 2 59 0 1 1092 1258 78 12 0 chr5 66554147 66554313 -85982946 - B2_Mm1t SINE B2 -11 182 15 1 1092 251 283 17 0 chr5 66554330 66554390 -85982869 - B1F SINE Alu -71 78 18 1 1092 561 210 26 59 chr5 66554419 66554571 -85982688 - B1F SINE Alu -1 148 2 1 1092 1292 102 11 0 chr5 66554660 66554836 -85982423 + B2_Mm1t SINE B2 2 179 -14 2 1092 884 147 15 0 chr5 66554868 66555004 -85982255 - B1_Mur4 SINE Alu -12 138 1 2 1092 231 129 14 28 chr5 66555157 66555194 -85982065 + T-rich Low_complexity Low_complexity 36 72 0 2 1092 1084 122 0 0 chr5 66555194 66555342 -85981917 - B1_Mus1 SINE Alu 0 148 1 2 1092 231 129 14 28 chr5 66555342 66555376 -85981883 + T-rich Low_complexity Low_complexity 3 35 0 2 1092 355 194 14 0 chr5 66555657 66555729 -85981530 - ID4_ SINE ID -9 74 2 2 1092 501 204 0 0 chr5 66555803 66555896 -85981363 - U6 snRNA snRNA -9 98 6 2 1092 295 238 62 12 chr5 66556946 66557027 -85980232 + LTR16C LTR ERVL 401 485 -4 2 1092 266 256 0 128 chr5 66557223 66557317 -85979942 + L2c LINE L2 3305 3386 -1 2 1092 223 325 11 11 chr5 66558275 66558362 -85978897 - MIRb SINE MIR -124 144 58 2 1092 248 311 27 0 chr5 66558625 66558699 -85978560 + ID4_ SINE ID 2 77 -6 2 1092 490 236 322 35 chr5 66559118 66559289 -85977970 + ID_B1 SINE B4 3 222 -2 2 1092 261 301 53 11 chr5 66559531 66559625 -85977634 - ID_B1 SINE B4 -28 196 99 2 1092 459 191 0 35 chr5 66559637 66559724 -85977535 + B1F1 SINE Alu 54 137 -12 2 1092 556 184 54 27 chr5 66560111 66560223 -85977036 - PB1D9 SINE Alu -1 119 5 2 1092 361 270 0 0 chr5 66560318 66560392 -85976867 + RSINE1 SINE B4 54 127 -38 2 1092 293 262 60 48 chr5 66560474 66560558 -85976701 + RSINE1 SINE B4 9 93 -72 2 1092 259 211 70 0 chr5 66560557 66560614 -85976645 + B1F SINE Alu 89 149 0 2 1092 1881 164 5 92 chr5 66560780 66561170 -85976089 + MTC LTR MaLR 62 417 -4 2 1092 186 43 0 0 chr5 66561186 66561209 -85976050 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1092 727 180 41 0 chr5 66561218 66561340 -85975919 - B3 SINE B2 -88 128 2 2 1092 23 0 0 0 chr5 66561347 66561370 -85975889 + AT_rich Low_complexity Low_complexity 1 23 0 2 1092 240 35 0 0 chr5 66561377 66561406 -85975853 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 1092 267 307 29 10 chr5 66561794 66561896 -85975363 - PB1D10 SINE Alu 0 117 14 2 1092 218 333 0 0 chr5 66561850 66561910 -85975349 - B4A SINE B4 -148 144 85 2 1092 490 136 123 0 chr5 66562310 66562391 -85974868 - B1_Mur2 SINE Alu -40 109 19 2 1092 342 237 59 40 chr5 66562315 66562416 -85974843 - MT2B LTR ERVL -344 257 155 2 1092 687 257 114 27 chr5 66562422 66562606 -85974653 - B3 SINE B2 -7 209 10 2 1092 240 210 37 0 chr5 66562609 66562690 -85974569 + C-rich Low_complexity Low_complexity 3 86 0 2 1092 3785 167 37 11 chr5 66562775 66563427 -85973832 - RMER1B Other Other -14 1052 384 2 1092 580 211 43 62 chr5 66563493 66563655 -85973604 + B3A SINE B2 40 198 0 2 1092 517 301 73 43 chr5 66564087 66564373 -85972886 + MTD LTR MaLR 1 292 -127 2 1092 532 217 16 16 chr5 66564403 66564525 -85972734 + MTD LTR MaLR 282 403 -16 2 1092 683 181 13 46 chr5 66564532 66564683 -85972576 + MTEa LTR MaLR 38 183 -196 2 1092 507 194 0 0 chr5 66564685 66564788 -85972471 + GA-rich Low_complexity Low_complexity 4 106 0 2 1092 185 0 0 39 chr5 66564792 66564818 -85972441 + (CAAG)n Simple_repeat Simple_repeat 2 26 0 2 1092 840 194 49 27 chr5 66564818 66565003 -85972256 + MTEa LTR MaLR 191 379 0 2 1092 304 257 157 65 chr5 66565003 66565110 -85972149 - B1F1 SINE Alu -16 133 17 2 1092 385 322 92 48 chr5 66565129 66565380 -85971879 + MER63B DNA AcHobo 11 272 -164 2 1092 249 300 50 91 chr5 66565395 66565516 -85971743 + MER63B DNA AcHobo 320 435 -1 2 1092 254 340 118 20 chr5 66566866 66566968 -85970291 + PB1D10 SINE Alu 1 112 -5 2 1092 248 291 12 71 chr5 66566984 66567026 -85970233 + PB1D10 SINE Alu 36 72 -45 2 1092 1527 151 175 9 chr5 66567026 66567341 -85969918 - ORR1B2 LTR MaLR 0 367 1 2 1092 248 291 12 71 chr5 66567341 66567383 -85969876 + PB1D10 SINE Alu 73 115 -2 2 1092 261 247 55 0 chr5 66567423 66567496 -85969763 - Lx8 LINE L1 -12 7461 7385 2 1092 21 57 0 0 chr5 66567592 66567627 -85969632 + AT_rich Low_complexity Low_complexity 1 35 0 2 1092 1183 61 0 0 chr5 66567627 66567774 -85969485 - B1_Mus2 SINE Alu 0 147 1 2 1092 289 343 19 0 chr5 66567775 66567880 -85969379 - L1MC4a LINE L1 -110 7772 7666 2 1092 1512 205 63 33 chr5 66568110 66568473 -85968786 + ORR1D1 LTR MaLR 1 374 0 2 1092 1205 218 234 0 chr5 66568497 66568800 -85968459 + ORR1D1 LTR MaLR 1 374 0 2 1092 384 111 0 0 chr5 66568800 66568872 -85968387 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 2 1092 1148 83 0 0 chr5 66568872 66569016 -85968243 - B1_Mus1 SINE Alu 0 148 5 2 1092 576 259 9 9 chr5 66569272 66569385 -85967874 - B3A SINE B2 -85 113 1 2 1092 629 200 41 41 chr5 66569399 66569545 -85967714 - B1_Mur2 SINE Alu -1 148 3 2 1092 554 289 8 0 chr5 66569561 66569689 -85967570 - B1_Mur1 SINE Alu -1 148 20 2 1092 38 68 0 0 chr5 66569692 66569765 -85967494 + AT_rich Low_complexity Low_complexity 1 73 0 2 1092 315 0 0 0 chr5 66569787 66569822 -85967437 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1092 575 276 7 40 chr5 66569825 66569976 -85967283 - RSINE1 SINE B4 -18 147 2 2 1092 375 310 146 0 chr5 66570058 66570216 -85967043 + B3A SINE B2 1 181 -17 2 1092 534 165 122 37 chr5 66570283 66570390 -85966869 + B1_Mur1 SINE Alu 34 149 0 2 1092 360 0 0 0 chr5 66570416 66570456 -85966803 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1092 321 280 13 0 chr5 66570497 66570572 -85966687 - ID4 SINE ID -5 78 3 2 1092 429 248 27 27 chr5 66570723 66570835 -85966424 + PB1D10 SINE Alu 3 114 -3 2 1092 492 273 26 18 chr5 66570865 66570997 -85966262 + PB1D9 SINE Alu 3 130 -17 2 1092 611 254 66 50 chr5 66570997 66571179 -85966080 + B3A SINE B2 3 187 -11 2 1092 1113 101 0 0 chr5 66571588 66571736 -85965523 + B1_Mus1 SINE Alu 1 148 0 2 1092 212 179 0 0 chr5 66571736 66571775 -85965484 + A-rich Low_complexity Low_complexity 1 39 0 2 1092 1255 41 0 0 chr5 66571887 66572033 -85965226 + B1_Mm SINE Alu 1 146 -1 2 1092 197 280 79 61 chr5 66573472 66573586 -85963673 + L3 LINE CR1 3935 4050 -439 2 1092 681 114 0 0 chr5 66574804 66574909 -85962350 + (TTCC)n Simple_repeat Simple_repeat 3 107 0 2 1092 1266 41 0 0 chr5 66574909 66575056 -85962203 - B1_Mus1 SINE Alu 0 148 2 2 1092 399 345 33 47 chr5 66575680 66575954 -85961305 + MYSERV6-int LTR ERVK 5322 5591 -3368 2 1092 250 323 48 108 chr5 66576024 66576277 -85960982 + MYSERV6-int LTR ERVK 5639 6093 -2866 2 1092 355 266 46 92 chr5 66576277 66576527 -85960732 + MER70-int LTR ERVL 2559 2647 -2376 2 1092 250 323 48 108 chr5 66576527 66576544 -85960715 + MYSERV6-int LTR ERVK 6094 6127 -2832 2 1092 1282 81 35 0 chr5 66576551 66576724 -85960535 + B2_Mm1t SINE B2 1 179 -14 2 1092 336 228 19 25 chr5 66576974 66577072 -85960187 + MTE2a LTR MaLR 268 367 -7 2 1092 354 343 179 0 chr5 66577273 66577291 -85959968 - RSINE1 SINE B4 0 165 147 2 1092 324 0 0 0 chr5 66577291 66577327 -85959932 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1092 354 343 179 0 chr5 66577327 66577448 -85959811 - RSINE1 SINE B4 -19 146 2 2 1092 233 299 82 10 chr5 66577446 66577544 -85959715 - PB1D10 SINE Alu -3 114 10 2 1092 227 253 160 0 chr5 66577605 66577680 -85959579 - MER2 DNA MER2_type -172 173 87 2 1092 349 278 0 11 chr5 66577714 66577725 -85959534 - PB1D10 SINE Alu -27 90 5 2 1092 394 200 0 13 chr5 66577725 66577801 -85959458 - ID_B1 SINE B4 -64 160 86 2 1092 1146 55 7 7 chr5 66578121 66578267 -85958992 + B1_Mm SINE Alu 2 147 0 2 1092 468 296 66 7 chr5 66578795 66578931 -85958328 - B1F SINE Alu -3 146 3 2 1092 335 268 12 0 chr5 66578955 66579037 -85958222 - ID4 SINE ID 0 83 1 2 1092 450 266 0 11 chr5 66579075 66579170 -85958089 - PB1D10 SINE Alu -1 116 23 2 1092 700 165 35 0 chr5 66579181 66579296 -85957963 + B3 SINE B2 1 119 -97 2 1092 273 256 183 46 chr5 66579296 66579312 -85957947 + B4 SINE B4 1 149 -143 2 1092 465 268 9 0 chr5 66579395 66579507 -85957752 - B1F SINE Alu -5 144 32 2 1092 1230 48 0 0 chr5 66579834 66579980 -85957279 - B1_Mus2 SINE Alu 0 147 2 2 1092 1271 93 11 32 chr5 66580254 66580442 -85956817 - B2_Mm2 SINE B2 -9 186 3 2 1092 274 312 12 0 chr5 66580860 66580940 -85956319 + ID4 SINE ID 1 81 -2 2 1092 196 53 26 26 chr5 66580943 66580982 -85956277 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1092 541 247 126 6 chr5 66581014 66581181 -85956078 + B4A SINE B4 49 235 -57 2 1092 393 22 0 0 chr5 66581283 66581329 -85955930 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 1092 351 0 0 0 chr5 66581329 66581367 -85955892 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1092 968 71 0 0 chr5 66581375 66581501 -85955758 - B1_Mus1 SINE Alu -21 127 2 2 1092 296 220 25 8 chr5 66581394 66581513 -85955746 - ORR1B1-int LTR MaLR -755 754 634 2 1092 1314 115 5 5 chr5 66581520 66581713 -85955546 - B2_Mm2 SINE B2 -2 193 1 2 1092 210 143 0 0 chr5 66581722 66581757 -85955502 + (A)n Simple_repeat Simple_repeat 1 35 0 2 1092 2512 91 234 4 chr5 66582705 66583247 -85954012 - Lx LINE L1 -1 6653 5987 2 1092 392 280 18 53 chr5 66583254 66583367 -85953892 - MLT1E3 LTR MaLR -209 415 307 2 1092 877 222 124 89 chr5 66583466 66583748 -85953511 + B4A SINE B4 1 292 0 2 1092 1382 79 17 0 chr5 66583765 66583943 -85953316 + B2_Mm2 SINE B2 1 181 -14 2 1092 609 14 0 0 chr5 66583943 66584013 -85953246 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 2 1092 473 265 0 10 chr5 66584036 66584139 -85953120 + ID_B1 SINE B4 114 215 -9 3 1092 231 167 0 0 chr5 66584164 66584206 -85953053 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1092 216 217 145 32 chr5 66584275 66584337 -85952922 - ID4 SINE ID -13 70 2 3 136 701 204 90 25 chr5 66584402 66584603 -85952656 - ID_B1 SINE B4 -8 216 3 3 1093 332 318 113 6 chr5 66584639 66584816 -85952443 + MIRb SINE MIR 22 217 -51 3 1093 370 234 13 0 chr5 66584873 66584950 -85952309 - ID4_ SINE ID -2 81 4 3 1093 466 318 70 0 chr5 66585058 66585187 -85952072 - ID_B1 SINE B4 -4 220 83 3 1093 185 108 0 26 chr5 66585250 66585288 -85951971 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 3 1093 3170 58 5 8 chr5 66585294 66585691 -85951568 + MTA_Mm LTR MaLR 1 396 0 3 1093 6111 62 32 2 chr5 66585761 66586548 -85950711 + L1_Mus3 LINE L1 5828 6637 -1 3 1093 558 290 0 28 chr5 66587086 66587228 -85950031 + ID_B1 SINE B4 81 218 -6 3 1093 869 147 0 0 chr5 66587450 66587579 -85949680 - B1_Mus1 SINE Alu -18 130 2 3 1093 21 0 0 0 chr5 66587899 66587920 -85949339 + AT_rich Low_complexity Low_complexity 1 21 0 3 1093 1699 141 52 13 chr5 66588177 66588487 -85948772 - RMER6A LTR ERVK 0 756 435 3 1093 1374 88 42 0 chr5 66588483 66588676 -85948583 - RMER6A LTR ERVK -529 227 27 3 1093 362 291 87 18 chr5 66588865 66589086 -85948173 - MTEb LTR MaLR 0 379 103 3 1093 228 111 0 0 chr5 66589878 66589914 -85947345 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 3 1093 216 97 0 0 chr5 66589959 66589990 -85947269 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1093 544 265 6 85 chr5 66589995 66590160 -85947099 - RSINE1 SINE B4 -10 155 4 3 1093 1376 69 35 0 chr5 66590203 66590377 -85946882 + B2_Mm2 SINE B2 2 181 -14 3 1093 351 0 0 0 chr5 66590540 66590579 -85946680 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1093 180 0 0 0 chr5 66590579 66590598 -85946661 + (GA)n Simple_repeat Simple_repeat 1 20 0 3 1093 210 312 62 0 chr5 66590600 66590664 -85946595 - ID4_ SINE ID -11 72 5 3 1093 409 242 91 0 chr5 66590784 66590883 -85946376 - PB1D7 SINE Alu 0 120 13 3 1093 916 231 34 0 chr5 66591059 66591267 -85945992 - B3 SINE B2 0 216 2 3 1093 280 0 0 48 chr5 66591873 66591915 -85945344 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 3 1093 1122 58 0 28 chr5 66591915 66592057 -85945202 - B1_Mus1 SINE Alu -10 138 1 3 1093 584 279 47 72 chr5 66592059 66592206 -85945053 + B3A SINE B2 11 166 -32 3 1093 396 0 0 0 chr5 66592206 66592250 -85945009 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1093 584 279 47 72 chr5 66592250 66592295 -85944964 + B3A SINE B2 167 198 0 3 1093 304 320 0 0 chr5 66592318 66592393 -85944866 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 3 1093 225 235 148 21 chr5 66592440 66592575 -85944684 - B4A SINE B4 0 165 11 3 1093 594 265 11 69 chr5 66592902 66593076 -85944183 + RSINE1 SINE B4 2 165 0 3 1093 563 160 28 28 chr5 66593081 66593261 -85943998 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1093 206 156 22 0 chr5 66593282 66593327 -85943932 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1093 223 159 91 0 chr5 66593458 66593502 -85943757 - RSINE1 SINE B4 -69 96 49 3 1093 369 196 17 121 chr5 66593512 66593628 -85943631 + MT2B LTR ERVL 154 257 -344 3 1093 828 175 0 40 chr5 66593528 66593677 -85943582 + B1_Mus1 SINE Alu 6 148 0 3 1093 424 167 57 32 chr5 66594613 66594737 -85942522 + Lx9 LINE L1 7517 7643 -1 3 1093 424 214 241 0 chr5 66594759 66594871 -85942388 + B1F2 SINE Alu 10 148 -1 3 1093 576 42 0 0 chr5 66595467 66595538 -85941721 + (TCC)n Simple_repeat Simple_repeat 1 71 0 3 1093 253 269 38 13 chr5 66595540 66595619 -85941640 - ID4_ SINE ID 0 83 3 3 1093 200 31 62 0 chr5 66595652 66595684 -85941575 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 3 1093 411 21 0 0 chr5 66595684 66595732 -85941527 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1093 594 225 7 44 chr5 66595733 66595868 -85941391 - B1F SINE Alu -13 136 7 3 1093 237 33 0 0 chr5 66596021 66596051 -85941208 + (TTG)n Simple_repeat Simple_repeat 2 31 0 3 1093 918 155 14 0 chr5 66596051 66596193 -85941066 - B1_Mur4 SINE Alu -6 144 1 3 1093 186 71 0 0 chr5 66596229 66596257 -85941002 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1093 320 220 97 21 chr5 66596583 66596674 -85940585 - ID_B1 SINE B4 -9 215 118 3 1093 1835 193 159 30 chr5 66596674 66596769 -85940490 - RLTR20D LTR ERVK 0 568 479 3 1093 360 0 0 0 chr5 66596769 66596809 -85940450 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1093 1835 193 159 30 chr5 66596809 66597172 -85940087 - RLTR20D LTR ERVK -90 478 53 3 1093 413 288 9 46 chr5 66597180 66597288 -85939971 - ID_B1 SINE B4 -93 131 28 3 1093 2713 168 13 8 chr5 66597288 66597762 -85939497 + RLTR20D LTR ERVK 1 476 -92 3 1093 351 238 23 45 chr5 66597792 66597880 -85939379 + RLTR20D LTR ERVK 465 550 -18 3 1093 252 321 93 19 chr5 66598110 66598218 -85939041 + ORR1E LTR MaLR 2 117 -242 3 1093 336 256 60 24 chr5 66598317 66598401 -85938858 + PB1D7 SINE Alu 17 103 -17 3 1093 183 100 0 0 chr5 66598403 66598433 -85938826 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1093 382 256 0 0 chr5 66598516 66598594 -85938665 - B3 SINE B2 -109 107 30 3 1093 1269 139 0 5 chr5 66598600 66598795 -85938464 - B2_Mm2 SINE B2 0 195 2 3 1093 194 0 39 0 chr5 66598854 66598880 -85938379 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1093 213 238 0 0 chr5 66598907 66598949 -85938310 - MER5A DNA MER1_type -126 63 22 3 1093 288 215 154 0 chr5 66599002 66599067 -85938192 + MTE2b LTR MaLR 57 131 -248 3 1093 638 238 68 31 chr5 66599298 66599609 -85937650 + RMER17C LTR ERVK 1 378 -32 3 1093 403 282 16 16 chr5 66599769 66599895 -85937364 + RMER17C-int LTR ERVK 81 206 -3032 3 1093 328 121 46 0 chr5 66599977 66600002 -85937257 - B2_Mm2 SINE B2 -1 192 161 3 1093 222 37 0 0 chr5 66600002 66600029 -85937230 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 3 1093 328 109 0 0 chr5 66600029 66600071 -85937188 - B2_Mm2 SINE B2 -35 160 119 3 1093 1126 112 72 6 chr5 66600077 66600097 -85937162 - B2_Mm1a SINE B2 0 193 162 3 1093 279 0 0 0 chr5 66600097 66600128 -85937131 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 3 1093 1126 112 72 6 chr5 66600128 66600287 -85936972 - B2_Mm1a SINE B2 -32 161 3 3 1093 362 216 83 83 chr5 66600618 66600739 -85936520 + RodERV21-int LTR ERV1 898 1018 -3973 3 1093 1681 158 11 93 chr5 66601192 66601556 -85935703 + RMER17C-int LTR ERVK 1116 1449 -1789 3 1093 583 85 0 0 chr5 66601557 66601639 -85935620 + RMER17C-int LTR ERVK 2556 2637 -601 3 1093 4099 160 42 58 chr5 66601645 66602362 -85934897 + RMER17C-int LTR ERVK 1431 2155 -1083 3 1093 1165 48 14 0 chr5 66602362 66602507 -85934752 + B1_Mus2 SINE Alu 1 147 0 3 1093 4099 160 42 58 chr5 66602507 66602606 -85934653 + RMER17C-int LTR ERVK 2156 2234 -1004 3 1093 925 26 9 0 chr5 66602729 66602842 -85934417 - B1_Mus1 SINE Alu -24 124 11 3 1093 4729 143 81 106 chr5 66602893 66603246 -85934013 + RMER17C-int LTR ERVK 2223 2584 -654 3 1093 240 211 0 55 chr5 66603246 66603301 -85933958 - LSU-rRNA_Hsa rRNA rRNA -782 4253 4202 3 1093 4729 143 81 106 chr5 66603301 66603935 -85933324 + RMER17C-int LTR ERVK 2585 3238 0 3 1093 474 203 113 21 chr5 66603935 66604076 -85933183 + RMER17C LTR ERVK 1 154 -256 3 1093 333 140 0 0 chr5 66604165 66604222 -85933037 + (GGA)n Simple_repeat Simple_repeat 1 57 0 3 1093 1139 82 14 0 chr5 66604530 66604676 -85932583 - B1_Mus1 SINE Alu 0 148 1 3 1093 1034 61 0 0 chr5 66604688 66604819 -85932440 - B1_Mm SINE Alu 0 147 17 3 1093 349 269 25 16 chr5 66604959 66605080 -85932179 + GA-rich Low_complexity Low_complexity 5 126 0 3 1093 390 368 17 0 chr5 66605100 66605217 -85932042 - RSINE1 SINE B4 -44 121 3 3 1093 379 284 99 1 chr5 66605301 66605426 -85931833 - MIRc SINE MIR -48 160 25 3 1093 1542 175 52 40 chr5 66605473 66605878 -85931381 - RMER17C LTR ERVK 0 410 1 3 1093 328 190 11 92 chr5 66606548 66606620 -85930639 - MTC LTR MaLR -131 290 221 3 1093 488 246 20 14 chr5 66606620 66606768 -85930491 - B1F1 SINE Alu 0 149 1 3 1093 328 190 11 92 chr5 66606768 66606782 -85930477 - MTC LTR MaLR -201 220 211 3 1093 197 379 0 0 chr5 66606821 66606887 -85930372 - MIR SINE MIR -69 193 128 3 1093 227 254 160 56 chr5 66606966 66607216 -85930043 + RMER10A LTR ERVL 167 442 0 3 1093 233 300 73 24 chr5 66607221 66607303 -85929956 - MIR SINE MIR -135 127 42 3 1093 303 244 100 25 chr5 66607834 66607914 -85929345 + MLT1G1 LTR MaLR 423 508 -71 3 1093 471 250 138 11 chr5 66607984 66608158 -85929101 - L1MB3 LINE L1 -44 6139 5944 3 1093 207 233 44 37 chr5 66608418 66608533 -85928726 - MIRc SINE MIR -76 192 84 3 1093 324 0 0 0 chr5 66609031 66609067 -85928192 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 3 1093 374 309 110 87 chr5 66609657 66609914 -85927345 - B4A SINE B4 0 292 36 3 1093 203 133 0 0 chr5 66610609 66610639 -85926620 + (CTCG)n Simple_repeat Simple_repeat 4 33 0 3 1093 306 235 235 0 chr5 66612351 66612436 -85924823 - PB1D10 SINE Alu -12 105 1 3 1093 371 254 96 82 chr5 66612545 66612594 -85924665 - RSINE1 SINE B4 0 165 127 3 1093 378 0 0 0 chr5 66612594 66612636 -85924623 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1093 371 254 96 82 chr5 66612636 66612732 -85924527 - RSINE1 SINE B4 -39 126 18 3 1093 731 214 7 14 chr5 66612876 66613023 -85924236 - B1_Mur1 SINE Alu -1 148 3 3 1093 237 132 0 0 chr5 66613107 66613145 -85924114 + (ATG)n Simple_repeat Simple_repeat 2 39 0 3 1093 898 210 103 0 chr5 66613149 66613344 -85923915 + B3 SINE B2 2 216 0 3 1093 1546 53 16 0 chr5 66613412 66613599 -85923660 + B2_Mm2 SINE B2 1 190 -5 3 1093 242 284 94 8 chr5 66614585 66614702 -85922557 - L2a LINE L2 -82 3344 3218 3 1093 249 0 73 0 chr5 66614921 66614962 -85922297 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1093 348 340 50 50 chr5 66614990 66615210 -85922049 - L2a LINE L2 -288 3138 2919 3 1093 451 131 0 28 chr5 66615935 66616006 -85921253 - ID4_ SINE ID -12 71 3 3 1093 576 266 21 7 chr5 66616036 66616176 -85921083 - RSINE1 SINE B4 -20 145 4 3 1093 494 185 70 61 chr5 66616179 66616294 -85920965 - PB1D10 SINE Alu -1 116 1 3 1093 520 278 11 69 chr5 66616439 66616613 -85920646 + RSINE1 SINE B4 2 165 0 3 1093 264 224 0 0 chr5 66616616 66616683 -85920576 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1093 226 216 20 0 chr5 66616708 66616759 -85920500 + L1MC1 LINE L1 5879 5930 -403 3 1093 242 254 28 0 chr5 66616824 66616895 -85920364 + L1MC1 LINE L1 6241 6313 -20 3 1093 240 35 0 0 chr5 66617013 66617042 -85920217 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 3 1093 622 233 68 0 chr5 66617093 66617226 -85920033 - B1_Mur3 SINE Alu -6 143 2 4 1093 25 41 0 20 chr5 66617226 66617246 -85920013 + AT_rich Low_complexity Low_complexity 1 20 0 4 1093 729 223 147 49 chr5 66617246 66617430 -85919829 + B3 SINE B2 2 203 -13 4 1093 25 41 0 20 chr5 66617430 66617459 -85919800 + AT_rich Low_complexity Low_complexity 1 29 0 4 1093 489 204 24 12 chr5 66617478 66617647 -85919612 + (TG)n Simple_repeat Simple_repeat 1 171 0 4 1093 221 176 54 0 chr5 66617668 66617742 -85919517 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1093 384 358 14 0 chr5 66617748 66617896 -85919363 - RSINE1 SINE B4 -3 162 13 4 1093 353 305 75 15 chr5 66617910 66618043 -85919216 - ID_B1 SINE B4 0 224 84 4 1093 847 161 36 0 chr5 66618143 66618280 -85918979 + B1_Mur4 SINE Alu 4 145 -5 4 1093 228 134 14 56 chr5 66618882 66618953 -85918306 + (CAAA)n Simple_repeat Simple_repeat 2 69 0 4 1093 256 299 74 33 chr5 66619253 66619374 -85917885 + MLT1A1 LTR MaLR 265 390 -18 4 1093 223 208 19 0 chr5 66619594 66619647 -85917612 + CT-rich Low_complexity Low_complexity 3 56 0 4 1093 798 121 41 41 chr5 66619648 66619794 -85917465 - B1_Mus2 SINE Alu -1 146 1 4 1093 444 269 6 121 chr5 66619802 66619846 -85917413 - B3A SINE B2 0 198 157 4 1093 180 0 0 0 chr5 66619846 66619866 -85917393 + (TC)n Simple_repeat Simple_repeat 1 20 0 4 1093 180 0 0 0 chr5 66619866 66619885 -85917374 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1093 450 0 0 0 chr5 66619890 66619940 -85917319 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1093 444 269 6 121 chr5 66619940 66620070 -85917189 - B3A SINE B2 -42 156 39 4 1093 323 278 8 122 chr5 66620481 66620548 -85916711 + PB1D10 SINE Alu 1 61 -56 4 1093 1130 63 0 14 chr5 66620548 66620686 -85916573 + B1_Mus1 SINE Alu 1 138 -10 4 1093 369 0 0 0 chr5 66620686 66620727 -85916532 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 1093 323 278 8 122 chr5 66620733 66620796 -85916463 + PB1D10 SINE Alu 62 116 -1 4 1093 895 212 88 0 chr5 66620932 66621125 -85916134 + B3 SINE B2 1 210 -6 4 1093 1212 28 14 0 chr5 66621196 66621340 -85915919 - B1_Mm SINE Alu 0 147 2 4 1093 780 230 66 0 chr5 66621397 66621549 -85915710 + RSINE1 SINE B4 4 165 0 4 1093 267 282 0 0 chr5 66621554 66621639 -85915620 + (CA)n Simple_repeat Simple_repeat 2 86 0 4 1093 1426 47 20 59 chr5 66621720 66621922 -85915337 + B2_Mm2 SINE B2 2 195 0 4 1093 1674 26 5 0 chr5 66621961 66622152 -85915107 + B2_Mm1a SINE B2 2 193 0 4 1093 249 83 0 0 chr5 66622229 66622265 -85914994 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4 1093 715 206 113 11 chr5 66622377 66622554 -85914705 - B3A SINE B2 0 198 4 4 1093 1316 80 5 41 chr5 66622562 66622757 -85914502 - B2_Mm2 SINE B2 -7 188 1 4 1093 260 309 0 0 chr5 66622869 66622937 -85914322 - tRNA-Ala-GCY_ tRNA tRNA -1 74 7 4 1093 469 269 86 69 chr5 66622976 66623067 -85914192 - MER58B DNA MER1_type -38 303 218 4 1093 292 264 63 45 chr5 66623067 66623178 -85914081 + PB1D10 SINE Alu 5 117 0 4 1093 469 269 86 69 chr5 66623178 66623318 -85913941 - MER58B DNA MER1_type -124 217 68 4 1093 644 249 52 36 chr5 66623610 66623643 -85913616 - B3A SINE B2 -1 197 166 4 1093 348 24 0 0 chr5 66623643 66623684 -85913575 + (TATG)n Simple_repeat Simple_repeat 3 43 0 4 1093 681 242 27 7 chr5 66623684 66623842 -85913417 - B3 SINE B2 -33 165 3 4 1093 196 0 118 0 chr5 66623884 66623918 -85913341 + (CCCCCA)n Simple_repeat Simple_repeat 4 41 0 4 1093 316 231 61 0 chr5 66624032 66624117 -85913142 + B1_Mm SINE Alu 1 95 -55 4 1093 1378 64 32 11 chr5 66624234 66624424 -85912835 - B2_Mm2 SINE B2 0 195 2 4 1093 847 197 0 0 chr5 66624428 66624575 -85912684 - B1_Mur4 SINE Alu -1 149 3 4 1093 181 53 0 73 chr5 66625201 66625242 -85912017 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1093 338 123 35 0 chr5 66625478 66625535 -85911724 + B1_Mur4 SINE Alu 82 140 -10 4 1093 267 177 0 0 chr5 66625610 66625672 -85911587 + T-rich Low_complexity Low_complexity 1 62 0 4 1093 1077 29 7 0 chr5 66625674 66625812 -85911447 - B1_Mus1 SINE Alu 0 148 10 4 1093 542 203 39 98 chr5 66625676 66625829 -85911430 - B4 SINE B4 -69 223 80 4 1093 493 213 40 121 chr5 66625829 66626027 -85911232 - L1M3 LINE L1 -613 5567 5386 4 1093 182 171 24 0 chr5 66626029 66626070 -85911189 + (TTA)n Simple_repeat Simple_repeat 2 43 0 4 1093 198 0 0 0 chr5 66626086 66626108 -85911151 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1093 607 191 0 0 chr5 66626143 66626248 -85911011 - PB1D9 SINE Alu -15 105 1 4 1093 258 32 0 0 chr5 66626271 66626302 -85910957 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1093 362 254 58 17 chr5 66626325 66626366 -85910893 - B1_Mur3 SINE Alu -17 132 89 4 1093 351 0 0 0 chr5 66626366 66626405 -85910854 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1093 362 254 58 17 chr5 66626405 66626483 -85910776 - B1_Mur3 SINE Alu -61 88 8 4 1093 783 245 78 0 chr5 66626725 66626929 -85910330 - ID_B1 SINE B4 -2 222 3 4 1093 778 227 46 11 chr5 66627165 66627339 -85909920 + B3A SINE B2 3 182 -16 4 1093 33 0 0 0 chr5 66627358 66627391 -85909868 + AT_rich Low_complexity Low_complexity 1 33 0 4 1093 1099 64 50 0 chr5 66627391 66627531 -85909728 - B1_Mm SINE Alu 0 147 1 4 1093 1285 97 0 36 chr5 66628028 66628185 -85909074 + B2_Mm2 SINE B2 2 158 -37 4 1093 288 0 0 0 chr5 66628185 66628217 -85909042 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 4 1093 1285 97 0 36 chr5 66628217 66628251 -85909008 + B2_Mm2 SINE B2 159 186 -9 4 1093 21 0 0 0 chr5 66628276 66628297 -85908962 + AT_rich Low_complexity Low_complexity 1 21 0 4 1093 492 125 0 0 chr5 66628332 66628428 -85908831 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 4 1093 258 240 133 0 chr5 66628436 66628511 -85908748 + PB1 SINE Alu 41 125 -2 4 1093 269 227 0 145 chr5 66628529 66628605 -85908654 + ID4 SINE ID 4 69 -83 4 1093 234 0 0 0 chr5 66628605 66628631 -85908628 + (CAA)n Simple_repeat Simple_repeat 3 28 0 4 1093 269 254 0 136 chr5 66628631 66628660 -85908599 + ID4 SINE ID 69 96 -56 4 1093 207 0 0 0 chr5 66628750 66628773 -85908486 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1093 1181 49 14 0 chr5 66628773 66628916 -85908343 - B1_Mm SINE Alu -2 145 1 4 1093 326 211 140 0 chr5 66628939 66629053 -85908206 - MER33 DNA MER1_type -152 172 43 4 1093 261 269 30 0 chr5 66629135 66629202 -85908057 + CT-rich Low_complexity Low_complexity 3 71 0 4 1093 427 85 0 0 chr5 66629242 66629301 -85907958 - B2_Mm2 SINE B2 -86 109 51 4 1093 551 231 142 12 chr5 66629543 66629705 -85907554 - B3A SINE B2 -15 183 1 4 1093 1265 57 3 7 chr5 66629715 66630015 -85907244 + (TCC)n Simple_repeat Simple_repeat 1 298 0 4 1093 665 243 7 0 chr5 66630046 66630194 -85907065 - B1F SINE Alu 0 149 1 4 1093 427 221 7 14 chr5 66630219 66630357 -85906902 + (TATG)n Simple_repeat Simple_repeat 3 139 0 4 1093 677 283 179 20 chr5 66630357 66630609 -85906650 - B4 SINE B4 0 292 1 4 1093 632 292 87 9 chr5 66630885 66631103 -85906156 + Lx8 LINE L1 7022 7256 -217 4 1093 593 207 131 49 chr5 66631347 66631530 -85905729 - B3A SINE B2 0 198 1 4 1093 180 111 0 0 chr5 66631833 66631860 -85905399 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1093 773 114 0 8 chr5 66632001 66632125 -85905134 + (TTTTC)n Simple_repeat Simple_repeat 2 124 0 4 1093 1043 41 6 116 chr5 66632130 66632294 -85904965 - B1_Mus2 SINE Alu -1 146 1 4 1093 243 0 0 0 chr5 66632313 66632340 -85904919 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 4 1093 678 240 194 0 chr5 66632340 66632515 -85904744 - B3 SINE B2 -7 209 1 4 1093 1642 36 0 20 chr5 66632521 66632718 -85904541 - B2_Mm1a SINE B2 0 193 1 4 1093 308 267 197 44 chr5 66632776 66632913 -85904346 - RSINE1 SINE B4 -3 162 5 4 1093 207 152 0 0 chr5 66633056 66633102 -85904157 + (TTA)n Simple_repeat Simple_repeat 1 46 0 4 1093 622 126 117 0 chr5 66633220 66633331 -85903928 + B2_Mm2 SINE B2 2 125 -70 4 1093 360 0 0 0 chr5 66633362 66633402 -85903857 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1093 579 158 0 0 chr5 66633402 66633503 -85903756 + B1_Mur3 SINE Alu 49 149 0 4 1093 333 296 0 0 chr5 66633829 66633900 -85903359 + RSINE1 SINE B4 22 92 -73 4 1093 263 50 50 0 chr5 66633919 66633959 -85903300 + (TATG)n Simple_repeat Simple_repeat 2 43 0 4 1093 24 0 0 0 chr5 66633964 66633988 -85903271 + AT_rich Low_complexity Low_complexity 1 24 0 4 1093 220 380 50 0 chr5 66633994 66634094 -85903165 - MIRm SINE MIR -149 127 23 4 1093 21 0 0 0 chr5 66634149 66634170 -85903089 + AT_rich Low_complexity Low_complexity 1 21 0 4 1093 365 229 14 0 chr5 66634173 66634243 -85903016 - ID4_ SINE ID -11 72 2 4 1093 721 266 20 30 chr5 66634264 66634462 -85902797 - B3A SINE B2 -2 196 1 4 1093 308 164 15 0 chr5 66634589 66634656 -85902603 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 4 1093 597 299 68 65 chr5 66634960 66635318 -85901941 - RLTR26 LTR ERVK -207 420 1 4 1093 739 201 155 77 chr5 66635989 66636183 -85901076 - B3 SINE B2 -7 209 1 4 1093 270 56 0 0 chr5 66636383 66636419 -85900840 + (CCAA)n Simple_repeat Simple_repeat 4 39 0 4 1093 234 329 25 0 chr5 66636481 66636560 -85900699 + ID4 SINE ID 2 82 -1 4 1093 694 152 42 164 chr5 66636576 66636616 -85900643 + B1_Mur3 SINE Alu 1 40 -109 4 1093 1428 78 0 25 chr5 66636616 66636813 -85900446 + B2_Mm2 SINE B2 1 192 -3 4 1093 694 152 42 164 chr5 66636813 66636937 -85900322 + B1_Mur3 SINE Alu 41 145 -4 4 1093 1206 48 7 0 chr5 66636944 66637091 -85900168 + B1_Mus1 SINE Alu 1 148 0 4 1093 1291 20 0 0 chr5 66637179 66637325 -85899934 + B1_Mm SINE Alu 2 147 0 4 1093 186 43 0 0 chr5 66637325 66637348 -85899911 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1093 360 0 0 0 chr5 66637734 66637774 -85899485 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1093 195 69 0 0 chr5 66638243 66638272 -85898987 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 5 1093 250 59 38 38 chr5 66638566 66638619 -85898640 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 5 1093 1603 165 64 22 chr5 66638891 66639300 -85897959 + RMER19B LTR ERVK 142 662 -240 5 1093 220 179 0 130 chr5 66639890 66639967 -85897292 - B4 SINE B4 -224 68 2 5 1093 534 238 16 39 chr5 66640369 66640496 -85896763 + RSINE1 SINE B4 2 125 -40 5 1093 180 0 0 0 chr5 66640614 66640634 -85896625 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1093 549 243 7 85 chr5 66640635 66640788 -85896471 - RSINE1 SINE B4 -20 145 5 5 1093 1329 74 6 28 chr5 66640941 66641121 -85896138 - B2_Mm2 SINE B2 -18 177 2 5 1093 243 0 0 0 chr5 66641398 66641425 -85895834 + (TC)n Simple_repeat Simple_repeat 1 27 0 5 1093 315 0 0 0 chr5 66641425 66641459 -85895800 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1093 388 331 93 12 chr5 66641739 66641996 -85895263 + MER90a LTR ERV1 320 597 -17 5 1093 940 61 15 0 chr5 66642038 66642170 -85895089 + (TTC)n Simple_repeat Simple_repeat 2 135 0 5 1093 441 119 0 0 chr5 66642184 66642251 -85895008 - B2_Mm2 SINE B2 -128 67 1 5 1093 333 0 0 0 chr5 66642275 66642312 -85894947 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1093 270 50 25 0 chr5 66642317 66642357 -85894902 - B2_Mm2 SINE B2 -154 41 1 5 1093 198 0 0 0 chr5 66642455 66642477 -85894782 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1093 248 233 11 117 chr5 66642952 66643013 -85894246 + PB1D10 SINE Alu 19 80 -40 5 1093 4815 115 45 96 chr5 66643013 66643967 -85893292 + RMER17A2 LTR ERVK 2 906 0 5 1093 248 200 0 128 chr5 66643967 66644015 -85893244 + PB1D10 SINE Alu 78 117 0 5 1093 1288 25 0 0 chr5 66644166 66644325 -85892934 + B2_Mm1a SINE B2 2 160 -33 5 1093 270 73 0 0 chr5 66644325 66644366 -85892893 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 5 1093 22 0 0 0 chr5 66644624 66644646 -85892613 + AT_rich Low_complexity Low_complexity 1 22 0 5 1093 376 241 129 45 chr5 66645035 66645213 -85892046 - L1MA4 LINE L1 -56 6244 6051 5 1093 351 0 0 0 chr5 66645286 66645325 -85891934 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1093 1193 55 0 7 chr5 66645629 66645777 -85891482 - B1_Mm SINE Alu 0 147 1 5 1093 899 240 45 5 chr5 66645809 66646010 -85891249 + ID_B1 SINE B4 7 215 -9 5 1093 1119 56 20 27 chr5 66646281 66646429 -85890830 + B1_Mus2 SINE Alu 1 147 0 5 1093 626 165 35 9 chr5 66646494 66646610 -85890649 + PB1D9 SINE Alu 2 120 0 5 1093 2090 178 24 53 chr5 66646621 66646918 -85890341 + RMER1C Other Other 906 1192 -150 5 1093 1118 85 0 22 chr5 66646918 66647099 -85890160 + (TTC)n Simple_repeat Simple_repeat 3 179 0 5 1093 2090 178 24 53 chr5 66647099 66647251 -85890008 + RMER1C Other Other 1193 1342 0 5 1093 1222 54 0 0 chr5 66647418 66647565 -85889694 - B1_Mus2 SINE Alu 0 147 1 5 1093 1064 126 200 0 chr5 66647586 66647761 -85889498 - B3 SINE B2 -6 210 1 5 1093 1170 108 16 11 chr5 66647847 66648034 -85889225 - B2_Mm2 SINE B2 -7 188 1 5 1093 7561 74 1 24 chr5 66648746 66649948 -85887311 + L1_Mus1 LINE L1 5394 6567 0 5 1093 339 307 78 0 chr5 66650317 66650470 -85886789 + MLT1J LTR MaLR 106 270 -242 5 1093 450 0 0 0 chr5 66650611 66650661 -85886598 + (GA)n Simple_repeat Simple_repeat 2 51 0 5 1093 953 41 0 8 chr5 66650661 66650784 -85886475 + (GAAAA)n Simple_repeat Simple_repeat 5 126 0 5 1093 223 269 139 13 chr5 66650784 66650863 -85886396 + MER5A DNA MER1_type 68 156 -33 5 1093 213 108 0 0 chr5 66651640 66651677 -85885582 + (TGG)n Simple_repeat Simple_repeat 2 38 0 5 1093 1121 64 0 0 chr5 66651805 66651945 -85885314 + B1_Mus1 SINE Alu 1 140 -8 5 1093 693 0 0 0 chr5 66651945 66652022 -85885237 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 1093 226 214 0 0 chr5 66652554 66652596 -85884663 + PB1D10 SINE Alu 65 106 -11 5 1093 238 156 0 43 chr5 66652596 66652643 -85884616 + G-rich Low_complexity Low_complexity 2 46 0 5 1093 362 226 94 0 chr5 66652781 66652887 -85884372 + PB1D10 SINE Alu 1 116 -1 5 1093 231 36 0 0 chr5 66653319 66653347 -85883912 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1093 207 0 0 0 chr5 66653362 66653385 -85883874 + (TTTTTA)n Simple_repeat Simple_repeat 6 28 0 5 1093 1268 73 33 6 chr5 66653718 66653898 -85883361 - B2_Mm1t SINE B2 -8 185 1 5 1093 1626 36 0 25 chr5 66654348 66654546 -85882713 + B2_Mm1a SINE B2 1 193 0 5 1093 244 246 189 15 chr5 66654546 66654678 -85882581 + L1M5 LINE L1 3599 3753 -2393 5 1093 744 219 41 17 chr5 66654747 66654919 -85882340 - B3 SINE B2 -40 176 1 5 1093 1216 27 0 14 chr5 66656082 66656230 -85881029 + B1_Mm SINE Alu 2 147 0 5 1093 242 273 33 22 chr5 66656634 66656724 -85880535 + MLT1A0 LTR MaLR 20 110 -255 5 1093 807 286 40 60 chr5 66656773 66657071 -85880188 - B4A SINE B4 0 292 1 5 1093 519 273 0 15 chr5 66657083 66657217 -85880042 - ID_B1 SINE B4 -9 215 84 5 1093 340 279 13 0 chr5 66657240 66657319 -85879940 + ID4_ SINE ID 4 83 0 5 1093 1093 82 7 0 chr5 66657417 66657563 -85879696 - B1_Mus1 SINE Alu 0 148 2 5 1093 230 200 0 18 chr5 66657563 66657619 -85879640 + MLT1A0 LTR MaLR 342 396 -12 5 1093 180 0 0 0 chr5 66657719 66657739 -85879520 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1093 1451 60 0 16 chr5 66658466 66658653 -85878606 + B2_Mm2 SINE B2 4 187 -8 5 1093 239 211 13 78 chr5 66658863 66659017 -85878242 + C-rich Low_complexity Low_complexity 2 145 0 5 1093 429 250 0 53 chr5 66659092 66659206 -85878053 + PB1D10 SINE Alu 4 111 -6 5 1093 530 213 138 106 chr5 66659378 66659567 -85877692 + B3A SINE B2 1 195 -3 5 1093 297 237 0 0 chr5 66659614 66659673 -85877586 - PB1 SINE Alu -24 103 45 5 1093 272 49 49 0 chr5 66660000 66660041 -85877218 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 5 1093 330 161 313 26 chr5 66660044 66660159 -85877100 - B2_Mm2 SINE B2 -1 194 47 5 1093 21 36 0 0 chr5 66660229 66660257 -85877002 + AT_rich Low_complexity Low_complexity 1 28 0 5 1093 609 126 0 18 chr5 66660269 66660391 -85876868 - B2_Mm1t SINE B2 -11 184 72 5 1093 217 149 61 41 chr5 66660736 66660785 -85876474 - PB1D7 SINE Alu -1 119 70 5 1093 506 290 0 35 chr5 66660741 66660884 -85876375 - ID_B1 SINE B4 -4 220 83 5 1093 255 315 107 30 chr5 66661007 66661138 -85876121 + L1MEc LINE L1 166 306 -6094 5 1093 189 0 0 0 chr5 66661863 66661884 -85875375 + (CCTG)n Simple_repeat Simple_repeat 1 21 0 5 1093 293 239 16 124 chr5 66662822 66662867 -85874392 + MT2B LTR ERVL 125 155 -446 5 1093 689 108 0 67 chr5 66662867 66662986 -85874273 + B1_Mur4 SINE Alu 2 112 -38 5 1093 7101 85 52 15 chr5 66662986 66664523 -85872736 + L1_Mus3 LINE L1 5034 6636 -2 5 1093 24 0 0 0 chr5 66664527 66664551 -85872708 + AT_rich Low_complexity Low_complexity 1 24 0 5 1093 541 254 39 22 chr5 66664563 66664774 -85872485 + L1_Mur1 LINE L1 5446 5661 -219 5 1093 363 355 25 0 chr5 66665744 66665865 -85871394 - B1F2 SINE Alu -16 133 10 5 1093 188 170 43 0 chr5 66666139 66666186 -85871073 + G-rich Low_complexity Low_complexity 3 51 0 5 1093 423 0 0 0 chr5 66667073 66667120 -85870139 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1093 453 309 0 16 chr5 66667383 66667511 -85869748 - MIRc SINE MIR -125 143 18 5 1093 696 225 0 26 chr5 66668622 66668777 -85868482 + B3 SINE B2 54 204 -12 5 1093 498 75 0 0 chr5 66668920 66668987 -85868272 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 5 1093 315 272 0 80 chr5 66669151 66669239 -85868020 - PB1D7 SINE Alu 0 120 40 5 1093 356 298 64 8 chr5 66669422 66669547 -85867712 + B3 SINE B2 81 212 -4 5 1093 1419 108 0 5 chr5 66670666 66670862 -85866397 - B2_Mm2 SINE B2 0 195 1 5 1093 276 267 104 74 chr5 66670863 66671065 -85866194 + L1MEg LINE L1 436 643 -5441 5 1093 2086 151 58 73 chr5 66671734 66672133 -85865126 - ORR1B1 LTR MaLR -1 393 1 5 1093 204 40 0 0 chr5 66672511 66672536 -85864723 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1093 462 266 95 27 chr5 66672846 66672993 -85864266 + RSINE1 SINE B4 3 159 -6 5 1093 237 132 0 0 chr5 66673008 66673046 -85864213 + (ATG)n Simple_repeat Simple_repeat 2 39 0 5 1093 1259 73 84 6 chr5 66673122 66673300 -85863959 + B2_Mm2 SINE B2 1 192 -3 5 1093 424 289 124 51 chr5 66673342 66673656 -85863603 + L1M5 LINE L1 5398 5734 -439 5 1093 1556 215 96 14 chr5 66673858 66674202 -85863057 - MTD LTR MaLR -47 372 1 5 1093 24 53 0 0 chr5 66674228 66674266 -85862993 + AT_rich Low_complexity Low_complexity 1 38 0 5 1093 902 259 10 19 chr5 66674276 66674481 -85862778 + B3 SINE B2 3 205 -11 5 1093 24 0 0 0 chr5 66674483 66674507 -85862752 + AT_rich Low_complexity Low_complexity 1 24 0 5 1093 241 160 19 57 chr5 66674516 66674569 -85862690 + B3A SINE B2 2 52 -146 5 1093 324 0 0 0 chr5 66674569 66674605 -85862654 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1093 395 270 45 0 chr5 66675766 66675877 -85861382 - PB1D10 SINE Alu -1 116 1 5 1093 270 306 122 0 chr5 66676016 66676114 -85861145 - PB1D7 SINE Alu -5 115 6 5 1093 2200 118 0 65 chr5 66676702 66677054 -85860205 + ORR1A4 LTR MaLR 1 329 0 5 1093 9575 121 114 110 chr5 66677054 66679006 -85858253 + ORR1A4-int LTR MaLR 1 1959 -4 5 1093 2000 83 31 103 chr5 66679015 66679364 -85857895 + ORR1A4 LTR MaLR 6 329 0 5 1093 300 53 0 0 chr5 66679657 66679695 -85857564 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 6 1093 1733 10 0 15 chr5 66679779 66679979 -85857280 - L1Md_A LINE L1 -496 6086 5890 6 1093 4496 8 0 0 chr5 66679979 66680470 -85856789 + L1Md_A LINE L1 6092 6582 0 6 1093 318 267 0 0 chr5 66680477 66680537 -85856722 + RSINE1 SINE B4 102 161 -4 6 1093 26 0 0 0 chr5 66680537 66680563 -85856696 + AT_rich Low_complexity Low_complexity 1 26 0 6 1093 25 51 0 0 chr5 66680838 66680877 -85856382 + AT_rich Low_complexity Low_complexity 1 39 0 6 1093 595 325 12 36 chr5 66680969 66681135 -85856124 - RSINE1 SINE B4 0 165 4 6 1093 474 234 36 0 chr5 66681771 66681882 -85855377 + PB1D7 SINE Alu 1 115 -5 6 1093 311 286 78 0 chr5 66681892 66681969 -85855290 + ID SINE ID 2 84 -140 6 1093 270 296 61 53 chr5 66681896 66682010 -85855249 + BC1_Mm scRNA scRNA 6 120 -32 6 1093 463 209 184 54 chr5 66682247 66682394 -85854865 - MTC LTR MaLR -9 412 247 6 1093 1427 142 56 30 chr5 66682394 66682528 -85854731 - Lx5 LINE L1 -961 6089 5956 6 1093 1271 34 0 0 chr5 66682528 66682674 -85854585 - B1_Mus1 SINE Alu 0 148 3 6 1093 1427 142 56 30 chr5 66682674 66682843 -85854416 - Lx5 LINE L1 -1095 5955 5778 6 1093 1856 128 10 29 chr5 66682836 66683149 -85854110 + L1_Mur2 LINE L1 3386 3692 -2185 6 1093 903 106 6 6 chr5 66683266 66683427 -85853832 - Lx3_Mus LINE L1 -10 6999 6839 6 1093 480 82 64 23 chr5 66683443 66683562 -85853697 - B1_Mm SINE Alu -13 135 8 6 1093 2377 47 0 0 chr5 66683562 66683841 -85853418 - Lx3_Mus LINE L1 -195 6814 6536 6 1093 253 321 24 12 chr5 66684205 66684287 -85852972 - L2a LINE L2 -3 3423 3341 6 1093 484 174 59 30 chr5 66684703 66684797 -85852462 + B1_Mur1 SINE Alu 40 137 -12 6 1093 435 63 0 0 chr5 66684797 66684860 -85852399 + (CTAA)n Simple_repeat Simple_repeat 3 65 0 6 1093 418 215 0 0 chr5 66685204 66685283 -85851976 - ID_B1 SINE B4 -1 223 145 6 1093 304 360 88 22 chr5 66685293 66685353 -85851906 - B4 SINE B4 0 292 231 6 1093 303 232 126 60 chr5 66685353 66685504 -85851755 - RSINE1 SINE B4 -4 161 1 6 1093 670 281 40 11 chr5 66685504 66685716 -85851543 - ID_B1 SINE B4 -62 230 2 6 1093 636 185 9 0 chr5 66689447 66689555 -85847704 + PB1D7 SINE Alu 5 113 -7 6 1093 468 0 0 0 chr5 66689724 66689776 -85847483 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1093 24 32 0 0 chr5 66691113 66691144 -85846115 + AT_rich Low_complexity Low_complexity 1 31 0 6 1093 22 0 0 0 chr5 66691162 66691184 -85846075 + AT_rich Low_complexity Low_complexity 1 22 0 6 1093 261 0 0 0 chr5 66691562 66691591 -85845668 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1093 478 191 0 15 chr5 66694072 66694205 -85843054 + (CCA)n Simple_repeat Simple_repeat 1 131 0 6 1093 395 308 80 27 chr5 66694826 66694976 -85842283 + RSINE1 SINE B4 1 158 -7 6 1093 438 20 0 0 chr5 66694981 66695032 -85842227 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1093 25 31 0 0 chr5 66695046 66695078 -85842181 + AT_rich Low_complexity Low_complexity 1 32 0 6 1093 33 25 0 0 chr5 66695816 66695856 -85841403 + AT_rich Low_complexity Low_complexity 1 40 0 6 1093 337 212 9 9 chr5 66696295 66696409 -85840850 + (TG)n Simple_repeat Simple_repeat 2 115 0 6 1093 689 239 38 25 chr5 66696411 66696570 -85840689 - RSINE1 SINE B4 -1 164 4 6 1093 464 307 7 21 chr5 66697808 66697948 -85839311 + ID_B1 SINE B4 79 216 -8 6 1093 648 189 45 0 chr5 66697823 66697955 -85839304 + B1F SINE Alu 11 148 -1 6 1093 21 0 0 0 chr5 66698426 66698447 -85838812 + AT_rich Low_complexity Low_complexity 1 21 0 6 1093 186 284 88 15 chr5 66699774 66699842 -85837417 + MIR SINE MIR 33 105 -157 6 1093 198 0 0 0 chr5 66700619 66700641 -85836618 + (TATG)n Simple_repeat Simple_repeat 4 25 0 6 1093 611 245 43 43 chr5 66700953 66701115 -85836144 - RSINE1 SINE B4 -1 164 3 6 1093 849 307 107 44 chr5 66701120 66701737 -85835522 - L1MB8 LINE L1 -12 6166 5511 6 1093 245 290 64 83 chr5 66702884 66702993 -85834266 - PB1D7 SINE Alu -13 107 1 6 1093 554 247 144 11 chr5 66703001 66703189 -85834070 - B3 SINE B2 -2 214 2 6 1093 544 194 7 7 chr5 66703247 66703382 -85833877 + GA-rich Low_complexity Low_complexity 2 136 0 6 1093 292 241 197 8 chr5 66703869 66703986 -85833273 + MIRb SINE MIR 58 196 -72 6 1093 228 320 103 0 chr5 66704255 66704352 -85832907 + MER2B DNA MER2_type 172 278 -58 6 1093 312 260 63 25 chr5 66705414 66705493 -85831766 - B1F SINE Alu -51 98 17 6 1093 305 252 86 19 chr5 66705570 66705675 -85831584 - B3A SINE B2 -2 196 85 6 1093 310 296 25 13 chr5 66705724 66705822 -85831437 - PB1D7 SINE Alu -7 113 7 6 1093 34 0 0 0 chr5 66706256 66706290 -85830969 + AT_rich Low_complexity Low_complexity 1 34 0 6 1093 3665 59 35 0 chr5 66706299 66706758 -85830501 - L1_Mus1 LINE L1 0 6567 6093 6 1093 212 333 46 31 chr5 66706830 66706960 -85830299 + L2b LINE L2 3238 3369 -6 6 1093 863 169 0 0 chr5 66707877 66708013 -85829246 - B1_Mur4 SINE Alu -13 137 2 6 1093 504 190 50 10 chr5 66709174 66709275 -85827984 + MLT1D LTR MaLR 396 500 -5 6 1093 220 27 26 26 chr5 66709318 66709356 -85827903 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 6 1093 1258 34 7 0 chr5 66709359 66709505 -85827754 - B1_Mus2 SINE Alu 0 147 1 6 1093 180 0 0 0 chr5 66709522 66709542 -85827717 + (TA)n Simple_repeat Simple_repeat 2 21 0 6 1093 1508 59 11 0 chr5 66710328 66710514 -85826745 + B2_Mm2 SINE B2 1 188 -7 6 1093 183 171 29 0 chr5 66711608 66711643 -85825616 - L3 LINE CR1 -75 4414 4379 6 1093 192 77 0 0 chr5 66711736 66711762 -85825497 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1093 561 30 0 0 chr5 66711762 66711828 -85825431 + (GA)n Simple_repeat Simple_repeat 1 67 0 6 1093 195 184 0 0 chr5 66711838 66711876 -85825383 + (TA)n Simple_repeat Simple_repeat 1 38 0 6 1093 1242 48 0 0 chr5 66711894 66712041 -85825218 - B1_Mus2 SINE Alu 0 147 1 6 1093 1543 124 50 148 chr5 66712414 66712718 -85824541 + ORR1A4 LTR MaLR 1 286 -43 6 1093 1096 93 0 0 chr5 66712718 66712858 -85824401 + B1_Mus1 SINE Alu 1 140 -8 6 1093 261 0 0 0 chr5 66712858 66712887 -85824372 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1093 1543 124 50 148 chr5 66712887 66712940 -85824319 + ORR1A4 LTR MaLR 287 323 -6 6 1093 216 105 0 0 chr5 66714123 66714156 -85823103 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1093 779 101 0 8 chr5 66714156 66714276 -85822983 + (TG)n Simple_repeat Simple_repeat 2 120 0 6 1093 459 0 0 0 chr5 66715193 66715244 -85822015 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1093 228 35 0 0 chr5 66715244 66715273 -85821986 + (CCA)n Simple_repeat Simple_repeat 1 29 0 6 1093 200 35 35 0 chr5 66715544 66715573 -85821686 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 6 1094 943 117 28 0 chr5 66716080 66716225 -85821034 + B1_Mur4 SINE Alu 1 149 -1 6 1094 216 207 0 17 chr5 66716227 66716286 -85820973 + A-rich Low_complexity Low_complexity 3 60 0 6 1094 214 296 39 39 chr5 66716571 66716673 -85820586 - MIRc SINE MIR -128 140 39 6 1094 1046 277 17 4 chr5 66717062 66717298 -85819961 - 7SK RNA RNA -89 242 4 6 1094 309 109 0 0 chr5 66717492 66717538 -85819721 + (TAA)n Simple_repeat Simple_repeat 3 48 0 6 1094 184 302 88 48 chr5 66720148 66720273 -85816986 - MIRb SINE MIR -122 146 17 6 1094 2549 102 11 6 chr5 66720597 66720962 -85816297 + RLTR9A LTR ERVK 1 367 -1 6 1094 182 310 202 9 chr5 66721080 66721194 -85816065 + L2a LINE L2 3290 3425 -1 6 1094 241 291 104 22 chr5 66721797 66721853 -85815406 + RLTR21 LTR ERVK 1055 1116 -456 6 1094 285 29 0 0 chr5 66721853 66721887 -85815372 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 1094 417 250 12 0 chr5 66721887 66721971 -85815288 - RSINE1 SINE B4 -29 136 52 6 1094 241 291 104 22 chr5 66721971 66722013 -85815246 + RLTR21 LTR ERVK 1117 1252 -320 6 1094 396 0 0 0 chr5 66722070 66722114 -85815145 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1094 218 368 0 0 chr5 66722144 66722201 -85815058 - ID4 SINE ID -25 58 2 6 1094 401 245 0 45 chr5 66722209 66722320 -85814939 - PB1D10 SINE Alu -8 109 4 6 1094 1106 125 33 28 chr5 66722484 66722665 -85814594 + B2_Mm1t SINE B2 1 182 -11 6 1094 364 126 0 22 chr5 66722703 66722769 -85814490 + B2_Mm2 SINE B2 47 109 -107 6 1094 372 133 0 0 chr5 66722784 66722844 -85814415 + (GAAA)n Simple_repeat Simple_repeat 3 62 0 6 1094 24 0 0 0 chr5 66722960 66722984 -85814275 + AT_rich Low_complexity Low_complexity 1 24 0 6 1094 368 209 120 17 chr5 66723477 66723594 -85813665 - MLT1A1 LTR MaLR 0 408 280 6 1094 191 266 61 30 chr5 66723952 66724018 -85813241 + MIRm SINE MIR 19 86 -190 6 1094 392 0 21 0 chr5 66724020 66724068 -85813191 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1094 1165 74 0 13 chr5 66724690 66724840 -85812419 + B1_Mus1 SINE Alu 1 148 0 6 1094 657 264 73 63 chr5 66724843 66725049 -85812210 + Tigger5 DNA MER2_type 7 214 -2192 6 1094 415 271 59 0 chr5 66725085 66725203 -85812056 + Tigger5 DNA MER2_type 2282 2406 0 6 1094 1050 79 50 0 chr5 66725364 66725504 -85811755 + B1_Mm SINE Alu 1 147 0 6 1094 234 229 70 14 chr5 66728822 66728893 -85808366 + MER45R DNA Tip100 312 386 -1195 6 1094 23 0 0 0 chr5 66728912 66728935 -85808324 + GC_rich Low_complexity Low_complexity 1 23 0 6 1094 270 0 0 0 chr5 66729128 66729158 -85808101 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1094 512 286 211 31 chr5 66730340 66730690 -85806569 + MER77 LTR ERVL 183 595 -12 6 1094 414 0 0 0 chr5 66731124 66731170 -85806089 + (CAA)n Simple_repeat Simple_repeat 3 48 0 6 1094 318 26 0 0 chr5 66733219 66733258 -85804001 + (CCCCG)n Simple_repeat Simple_repeat 5 43 0 7 1094 949 183 88 39 chr5 66733494 66733593 -85803666 - B3 SINE B2 -1 215 106 7 1094 2982 155 165 13 chr5 66733593 66734194 -85803065 + RLTR17 LTR ERVK 1 692 0 7 1094 949 183 88 39 chr5 66734194 66734299 -85802960 - B3 SINE B2 -111 105 1 7 1094 422 304 71 11 chr5 66734323 66734587 -85802672 - L1MD3 LINE L1 -189 5990 5705 7 1094 1177 254 235 47 chr5 66734589 66735129 -85802130 - RLTR26 LTR ERVK 0 642 1 7 1094 392 176 189 0 chr5 66735155 66735241 -85802018 + PB1D10 SINE Alu 6 112 -37 7 1094 219 321 12 24 chr5 66735241 66735324 -85801935 + ID4_ SINE ID 2 83 0 7 1094 310 312 32 0 chr5 66735344 66735437 -85801822 + L1M5 LINE L1 5345 5440 -739 7 1094 255 114 0 0 chr5 66735487 66735531 -85801728 + (CCAA)n Simple_repeat Simple_repeat 2 45 0 7 1094 369 145 0 0 chr5 66735784 66735860 -85801399 + (GA)n Simple_repeat Simple_repeat 1 76 0 7 1094 741 185 17 0 chr5 66735881 66736054 -85801205 + GA-rich Low_complexity Low_complexity 1 176 0 7 1094 540 201 18 18 chr5 66736470 66736614 -85800645 - B3 SINE B2 -54 144 1 7 1094 431 312 57 0 chr5 66736743 66736884 -85800375 + MER58A DNA MER1_type 46 194 -30 7 1094 225 65 0 0 chr5 66737083 66737114 -85800145 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1094 228 67 0 0 chr5 66737779 66737809 -85799450 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 1094 242 312 71 55 chr5 66738494 66738677 -85798582 - ORR1E LTR MaLR -142 217 32 7 1094 189 325 37 12 chr5 66739199 66739280 -85797979 - MIRm SINE MIR -136 140 58 7 1094 1234 200 55 22 chr5 66739668 66739939 -85797320 - MTEb LTR MaLR -99 280 1 7 1094 345 172 0 0 chr5 66740424 66740488 -85796771 + (CCA)n Simple_repeat Simple_repeat 1 64 0 7 1094 243 337 101 0 chr5 66740491 66740580 -85796679 - B1F1 SINE Alu -19 130 33 7 1094 873 101 28 41 chr5 66740734 66740879 -85796380 + B1_Mus2 SINE Alu 1 143 -4 7 1094 1232 66 65 16 chr5 66741624 66741808 -85795451 - B2_Mm2 SINE B2 0 195 3 7 1094 410 316 71 27 chr5 66741915 66742139 -85795120 + MLT1D LTR MaLR 210 443 -62 7 1094 2084 108 8 97 chr5 66743891 66744251 -85793008 - ORR1A4 LTR MaLR -1 328 1 7 1094 399 341 97 46 chr5 66744253 66744278 -85792981 - B4A SINE B4 -32 260 237 7 1094 546 294 7 33 chr5 66744278 66744429 -85792830 - B1_Mur1 SINE Alu -2 147 1 7 1094 405 233 109 25 chr5 66744437 66744556 -85792703 - B1F SINE Alu -3 146 18 7 1094 788 271 58 5 chr5 66744556 66744640 -85792619 - ID_B1 SINE B4 -56 219 12 7 1094 2539 158 33 18 chr5 66745253 66745705 -85791554 + RMER20B LTR ERVK 1 459 -168 7 1094 723 228 39 111 chr5 66746581 66746788 -85790471 + B3A SINE B2 7 198 0 7 1094 2157 131 19 0 chr5 66746913 66747233 -85790026 - ORR1A3 LTR MaLR 0 326 1 7 1094 604 297 132 41 chr5 66747476 66747795 -85789464 + ORR1E LTR MaLR 1 348 -11 7 1094 994 165 67 34 chr5 66747888 66747904 -85789355 - Lx5 LINE L1 0 7050 7037 7 1094 204 40 0 0 chr5 66747904 66747929 -85789330 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 7 1094 994 165 67 34 chr5 66747929 66748150 -85789109 - Lx5 LINE L1 -14 7036 6806 7 1094 233 356 50 0 chr5 66748515 66748616 -85788643 - LTR50 LTR ERVL -119 676 571 7 1094 198 0 0 0 chr5 66748625 66748647 -85788612 + (TA)n Simple_repeat Simple_repeat 2 23 0 7 1094 382 256 12 0 chr5 66748890 66748972 -85788287 + ID4_ SINE ID 1 83 0 7 1094 369 0 0 0 chr5 66749384 66749425 -85787834 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1094 21 0 0 0 chr5 66750077 66750098 -85787161 + AT_rich Low_complexity Low_complexity 1 21 0 7 1094 904 132 178 35 chr5 66750238 66750435 -85786824 - URR1B DNA MER1_type 0 225 1 7 1094 279 307 98 38 chr5 66750477 66750660 -85786599 + LTR84a LTR ERVL 19 212 -545 7 1094 306 315 44 66 chr5 66750942 66751090 -85786169 + LTR84a LTR ERVL 613 761 0 7 1094 260 269 51 0 chr5 66752412 66752490 -85784769 + ID4 SINE ID 2 83 0 7 1094 294 73 0 0 chr5 66753033 66753074 -85784185 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 7 1094 214 184 0 0 chr5 66755667 66755705 -85781554 - B3 SINE B2 -177 39 2 7 1094 2738 196 44 32 chr5 66757106 66757724 -85779535 + Lx7 LINE L1 6508 7132 -564 7 1094 302 214 0 14 chr5 66757734 66757805 -85779454 + Lx7 LINE L1 7262 7331 -365 7 1094 578 210 76 123 chr5 66757841 66757985 -85779274 + Lx7 LINE L1 7325 7476 -220 7 1094 1237 54 0 0 chr5 66757985 66758132 -85779127 - B1_Mus1 SINE Alu 0 148 2 7 1094 578 210 76 123 chr5 66758132 66758368 -85778891 + Lx7 LINE L1 7477 7687 -9 7 1094 689 180 6 0 chr5 66758368 66758540 -85778719 + (TCCA)n Simple_repeat Simple_repeat 1 173 0 7 1094 303 28 0 0 chr5 66759171 66759207 -85778052 + (CGTG)n Simple_repeat Simple_repeat 3 38 0 7 1094 677 216 108 0 chr5 66759706 66759854 -85777405 - B4A SINE B4 0 292 129 7 1094 794 175 28 28 chr5 66760526 66760667 -85776592 + B1_Mur3 SINE Alu 1 141 -8 7 1094 194 0 39 0 chr5 66760667 66760693 -85776566 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1094 263 297 103 12 chr5 66760825 66760984 -85776275 + MIRm SINE MIR 2 169 -93 7 1094 414 0 0 0 chr5 66761149 66761195 -85776064 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1094 316 322 11 0 chr5 66761211 66761298 -85775961 - MER5A DNA MER1_type -65 124 37 7 1094 545 224 71 142 chr5 66761483 66761779 -85775480 - B4 SINE B4 -17 275 1 7 1094 843 250 90 0 chr5 66762769 66762913 -85774346 + B3 SINE B2 2 148 -68 7 1094 456 19 0 0 chr5 66762913 66762966 -85774293 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1094 843 250 90 0 chr5 66762966 66763009 -85774250 + B3 SINE B2 149 204 -12 7 1094 523 165 49 4 chr5 66763533 66763637 -85773622 + PB1D10 SINE Alu 5 112 -8 7 1094 903 184 7 0 chr5 66763649 66763796 -85773463 + B1_Mur2 SINE Alu 2 149 0 7 1094 193 29 59 0 chr5 66763845 66763879 -85773380 + (CAA)n Simple_repeat Simple_repeat 1 36 0 7 1094 392 250 91 0 chr5 66764605 66764693 -85772566 + PB1D10 SINE Alu 10 105 -12 7 1094 338 224 243 0 chr5 66764693 66764712 -85772547 + ID_B1 SINE B4 91 223 -1 7 1094 251 196 0 0 chr5 66765626 66765672 -85771587 - MamRep605 Unknown Unknown -254 622 577 7 1094 180 111 0 0 chr5 66766013 66766040 -85771219 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1094 256 356 62 28 chr5 66766094 66766273 -85770986 - MIR SINE MIR -14 248 64 7 1094 260 333 56 16 chr5 66766600 66766725 -85770534 + MIR SINE MIR 31 160 -102 7 1094 706 62 0 67 chr5 66767032 66767136 -85770123 - URR1B DNA MER1_type 0 225 129 7 1094 198 0 0 0 chr5 66768573 66768595 -85768664 + (TTA)n Simple_repeat Simple_repeat 2 23 0 7 1094 413 276 10 0 chr5 66768831 66768929 -85768330 - MER82 DNA MER2_type -148 505 407 7 1094 683 294 61 75 chr5 66769012 66769240 -85768019 + B4A SINE B4 68 292 0 7 1094 288 172 0 0 chr5 66769240 66769298 -85767961 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1094 209 298 10 0 chr5 66769278 66769382 -85767877 + (TA)n Simple_repeat Simple_repeat 2 106 0 7 1094 569 258 227 0 chr5 66769413 66769642 -85767617 - MER82 DNA MER2_type -323 330 50 7 1094 181 305 0 17 chr5 66770200 66770260 -85766999 + L3 LINE CR1 2158 2216 -2273 7 1094 198 343 0 43 chr5 66770295 66770365 -85766894 + MIR SINE MIR 170 236 -26 7 1094 188 326 29 58 chr5 66770636 66770740 -85766519 - MIR3 SINE MIR -1 207 107 7 1094 184 228 86 17 chr5 66771386 66771444 -85765815 - MIR SINE MIR -86 122 61 7 1094 228 220 40 0 chr5 66771980 66772030 -85765229 + CT-rich Low_complexity Low_complexity 3 54 0 7 1094 419 283 10 0 chr5 66772035 66772134 -85765125 - PB1D10 SINE Alu -16 101 2 7 1094 944 56 0 0 chr5 66772225 66772350 -85764909 + L1_Mus4 LINE L1 6251 6375 -261 7 1094 222 241 138 0 chr5 66773016 66773074 -85764185 + ID4 SINE ID 15 80 -3 7 1094 1496 68 16 0 chr5 66773895 66774087 -85763172 - B2_Mm2 SINE B2 0 195 1 7 1094 1415 71 27 0 chr5 66774093 66774276 -85762983 - B2_Mm2 SINE B2 -7 188 1 7 1094 411 308 28 70 chr5 66774277 66774420 -85762839 - MIR3 SINE MIR -62 146 10 7 1094 229 305 0 17 chr5 66774493 66774553 -85762706 - B1F2 SINE Alu -15 134 76 7 1094 988 127 6 93 chr5 66774724 66774907 -85762352 - URR1B DNA MER1_type 0 225 59 7 1094 486 270 98 53 chr5 66775020 66775286 -85761973 - ORR1E LTR MaLR -3 356 79 7 1094 188 276 67 33 chr5 66775339 66775399 -85761860 + MIRb SINE MIR 20 81 -187 7 1094 292 277 164 85 chr5 66776831 66777223 -85760036 + MLT1H LTR MaLR 51 539 -16 7 1094 199 176 0 0 chr5 66778595 66778629 -85758630 - MIR SINE MIR -63 145 112 7 1094 246 280 92 18 chr5 66780074 66780183 -85757076 + L1MC4a LINE L1 7758 7874 -8 7 1094 792 164 0 15 chr5 66780422 66780558 -85756701 - B1_Mus2 SINE Alu 0 147 14 7 1094 504 254 129 62 chr5 66780620 66780813 -85756446 - B3 SINE B2 -10 206 1 7 1094 297 0 0 0 chr5 66780936 66780969 -85756290 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1094 1309 81 31 51 chr5 66781923 66782119 -85755140 + B2_Mm2 SINE B2 3 194 -1 7 1094 298 225 24 24 chr5 66782495 66782577 -85754682 - Tigger5 DNA MER2_type -2228 178 97 7 1094 249 108 0 0 chr5 66783620 66783657 -85753602 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1094 399 218 13 0 chr5 66784888 66784966 -85752293 - ID4_ SINE ID -3 80 2 7 1094 602 338 20 0 chr5 66786696 66786894 -85750365 + Tigger7 DNA MER2_type 54 255 -2236 7 1094 187 54 54 0 chr5 66787020 66787057 -85750202 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1094 3115 55 60 0 chr5 66787089 66787473 -85749786 + MTB_Mm LTR MaLR 1 407 0 7 1094 225 0 0 0 chr5 66787818 66787843 -85749416 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 7 1094 925 93 0 0 chr5 66787866 66787995 -85749264 - B2_Mm2 SINE B2 -66 129 1 7 1094 239 336 19 7 chr5 66789223 66789337 -85747922 + MIRc SINE MIR 1 118 -150 8 1094 350 194 24 24 chr5 66793531 66793695 -85743564 + (TGGA)n Simple_repeat Simple_repeat 2 165 0 8 1094 378 299 163 53 chr5 66794468 66794976 -85742283 + L1ME3B LINE L1 5599 6162 -78 8 1094 306 0 0 0 chr5 66794980 66795014 -85742245 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1094 668 182 0 7 chr5 66795469 66795607 -85741652 + CT-rich Low_complexity Low_complexity 4 140 0 8 1094 1225 48 0 0 chr5 66795607 66795754 -85741505 - B1_Mm SINE Alu 0 147 1 8 1094 274 58 58 0 chr5 66796000 66796052 -85741207 + (TTTTTG)n Simple_repeat Simple_repeat 3 57 0 8 1094 23 0 0 0 chr5 66796938 66796961 -85740298 + AT_rich Low_complexity Low_complexity 1 23 0 8 1094 2150 151 60 67 chr5 66797746 66797955 -85739304 + MTD LTR MaLR 1 210 -209 8 1094 1169 81 122 0 chr5 66797955 66798109 -85739150 + B2_Mm1a SINE B2 1 160 -33 8 1094 180 0 0 0 chr5 66798109 66798129 -85739130 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 8 1094 1169 81 122 0 chr5 66798129 66798146 -85739113 + B2_Mm1a SINE B2 161 191 -2 8 1094 2150 151 60 67 chr5 66798146 66798356 -85738903 + MTD LTR MaLR 211 417 -2 8 1094 243 0 0 0 chr5 66798358 66798385 -85738874 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1094 548 95 12 0 chr5 66799184 66799268 -85737991 + (TC)n Simple_repeat Simple_repeat 2 86 0 8 1094 304 221 15 0 chr5 66799286 66799354 -85737905 - ID4 SINE ID -7 76 8 8 1094 244 254 0 0 chr5 66799360 66799419 -85737840 + C-rich Low_complexity Low_complexity 1 59 0 8 1094 315 164 0 0 chr5 66800470 66800531 -85736728 + T-rich Low_complexity Low_complexity 1 61 0 8 1094 1197 35 21 0 chr5 66800533 66800677 -85736582 - B1_Mm SINE Alu 0 147 1 8 1094 418 171 12 35 chr5 66801884 66801969 -85735290 - PB1D9 SINE Alu -16 104 22 8 1094 220 250 0 0 chr5 66802134 66802174 -85735085 + C-rich Low_complexity Low_complexity 2 41 0 8 1094 26 0 0 0 chr5 66802188 66802214 -85735045 + AT_rich Low_complexity Low_complexity 1 26 0 8 1094 201 74 0 0 chr5 66802267 66802294 -85734965 + (CCCCCT)n Simple_repeat Simple_repeat 1 27 0 8 1094 594 239 67 7 chr5 66802311 66802446 -85734813 - B1_Mur1 SINE Alu -5 144 2 8 1094 288 182 36 0 chr5 66802762 66802817 -85734442 + MLT1J1 LTR MaLR 50 106 -338 8 1094 225 0 0 0 chr5 66805086 66805111 -85732148 + (TTCTC)n Simple_repeat Simple_repeat 1 25 0 8 1094 630 39 0 0 chr5 66805112 66805189 -85732070 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 8 1094 2000 154 47 28 chr5 66805439 66805799 -85731460 + ORR1B2 LTR MaLR 1 367 0 8 1094 486 0 0 0 chr5 66805805 66805859 -85731400 + (GA)n Simple_repeat Simple_repeat 2 55 0 8 1094 243 349 8 0 chr5 66807924 66808050 -85729209 + (TG)n Simple_repeat Simple_repeat 1 127 0 8 1094 182 31 0 111 chr5 66808103 66808127 -85729132 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1094 1145 68 0 13 chr5 66808127 66808277 -85728982 + B1_Mus1 SINE Alu 1 148 0 8 1094 182 31 0 111 chr5 66808277 66808288 -85728971 + (A)n Simple_repeat Simple_repeat 1 11 0 8 1094 548 206 0 106 chr5 66808316 66808457 -85728802 - B4 SINE B4 -70 222 97 8 1094 259 253 53 32 chr5 66808681 66808775 -85728484 + MER81 DNA AcHobo 1 96 -18 8 1094 196 150 74 12 chr5 66809032 66809194 -85728065 + (TA)n Simple_repeat Simple_repeat 2 173 0 8 1094 267 189 0 0 chr5 66809924 66809977 -85727282 + A-rich Low_complexity Low_complexity 1 53 0 8 1094 315 234 26 0 chr5 66810032 66810109 -85727150 - PB1D9 SINE Alu -8 112 34 8 1094 191 36 0 35 chr5 66810158 66810187 -85727072 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 8 1094 1057 135 0 6 chr5 66810270 66810441 -85726818 + URR1A DNA MER1_type 57 226 0 8 1094 230 243 174 55 chr5 66810895 66811004 -85726255 + L2b LINE L2 3249 3370 -5 8 1094 622 13 0 0 chr5 66811105 66811182 -85726077 + B1_Mm SINE Alu 61 137 -10 8 1094 266 319 11 21 chr5 66811688 66811781 -85725478 - MLT1B LTR MaLR -56 411 320 8 1094 994 278 39 4 chr5 66811900 66812156 -85725103 - B4A SINE B4 -25 267 3 8 1094 323 226 158 24 chr5 66812167 66812294 -85724965 - MLT1B LTR MaLR -246 144 1 8 1094 2232 104 28 0 chr5 66813850 66814168 -85723091 + ORR1A2 LTR MaLR 1 327 0 8 1094 321 258 112 8 chr5 66814319 66814444 -85722815 + L1MA6 LINE L1 6146 6283 -17 8 1094 417 297 23 0 chr5 66814840 66814968 -85722291 - B1F SINE Alu -18 131 1 8 1094 285 181 137 14 chr5 66816394 66816467 -85720792 + ID_B1 SINE B4 132 213 -11 8 1094 22 0 0 0 chr5 66817874 66817896 -85719363 + AT_rich Low_complexity Low_complexity 1 22 0 8 1094 727 193 40 13 chr5 66817896 66818048 -85719211 + B3A SINE B2 1 156 -42 8 1094 324 0 0 0 chr5 66818051 66818087 -85719172 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1094 252 333 128 46 chr5 66818156 66818351 -85718908 + MLT1E1 LTR MaLR 41 251 -403 8 1094 1367 239 97 5 chr5 66818432 66818803 -85718456 - MTD LTR MaLR -14 405 1 8 1094 182 281 169 12 chr5 66818919 66819002 -85718257 + MER5A DNA MER1_type 31 126 -63 8 1094 376 266 32 8 chr5 66819060 66819168 -85718091 + RSINE1 SINE B4 26 136 -29 8 1094 627 14 0 0 chr5 66819168 66819240 -85718019 + (CA)n Simple_repeat Simple_repeat 1 72 0 8 1094 376 266 32 8 chr5 66819240 66819256 -85718003 + RSINE1 SINE B4 137 152 -13 8 1094 1294 145 22 9 chr5 66819837 66820059 -85717200 - URR1B DNA MER1_type 0 225 1 8 1094 353 136 15 0 chr5 66820112 66820178 -85717081 + GA-rich Low_complexity Low_complexity 3 69 0 8 1094 1022 140 0 6 chr5 66820185 66820365 -85716894 + (GGA)n Simple_repeat Simple_repeat 2 180 0 8 1094 496 253 85 11 chr5 66820382 66820570 -85716689 + MLT1B LTR MaLR 186 387 -3 8 1094 645 263 83 16 chr5 66821141 66821330 -85715929 - B3 SINE B2 -1 194 1 8 1094 245 206 21 21 chr5 66821645 66821739 -85715520 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 8 1094 21 0 0 0 chr5 66821913 66821934 -85715325 + AT_rich Low_complexity Low_complexity 1 21 0 8 1094 23 33 0 0 chr5 66822317 66822347 -85714912 + AT_rich Low_complexity Low_complexity 1 30 0 8 1094 330 26 0 0 chr5 66823347 66823386 -85713873 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1094 1158 68 0 0 chr5 66823404 66823551 -85713708 + B1_Mus1 SINE Alu 2 148 0 8 1094 1225 119 16 0 chr5 66824465 66824650 -85712609 - B2_Mm2 SINE B2 -7 188 1 8 1094 193 268 71 35 chr5 66824863 66824948 -85712311 + MIRb SINE MIR 113 200 -68 8 1094 225 283 21 32 chr5 66825651 66825746 -85711513 - MER121 Unknown Unknown -172 240 147 8 1094 1961 93 82 53 chr5 66825828 66826146 -85711113 + ORR1A2 LTR MaLR 1 327 0 8 1094 558 0 0 0 chr5 66826230 66826292 -85710967 + (CAGAA)n Simple_repeat Simple_repeat 3 64 0 8 1094 1321 88 22 0 chr5 66827688 66827870 -85709389 - B2_Mm2 SINE B2 -9 186 1 8 1094 261 57 0 0 chr5 66828158 66828193 -85709066 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 8 1094 257 264 97 0 chr5 66828775 66828847 -85708412 + ID4 SINE ID 1 79 -4 8 1094 409 243 142 13 chr5 66829263 66829496 -85707763 + Charlie1b DNA MER1_type 190 452 -71 8 1094 1135 51 0 0 chr5 66830041 66830178 -85707081 - B1_Mus2 SINE Alu -10 137 1 8 1094 244 271 7 157 chr5 66830729 66830760 -85706499 + MT2B LTR ERVL 139 232 -369 8 1094 256 309 0 87 chr5 66830760 66830863 -85706396 + PB1D10 SINE Alu 2 95 -22 8 1094 348 247 22 0 chr5 66830973 66831062 -85706197 + MER5A1 DNA MER1_type 73 163 -3 8 1094 186 43 0 0 chr5 66831300 66831323 -85705936 + (CAA)n Simple_repeat Simple_repeat 1 23 0 8 1094 420 301 9 9 chr5 66831850 66831964 -85705295 - RSINE1 SINE B4 -8 157 44 8 1094 227 103 26 0 chr5 66832330 66832369 -85704890 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 8 1094 320 188 31 0 chr5 66833441 66833505 -85703754 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 8 1094 258 32 0 0 chr5 66833904 66833935 -85703324 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1094 515 267 22 13 chr5 66834120 66834310 -85702949 - B3 SINE B2 -3 192 1 8 1094 596 252 14 28 chr5 66834444 66834587 -85702672 - B1_Mur1 SINE Alu -8 141 1 8 1094 227 192 0 0 chr5 66834939 66834991 -85702268 + T-rich Low_complexity Low_complexity 1 52 0 8 1094 5630 2 0 0 chr5 66835597 66836204 -85701055 - L1Md_A LINE L1 0 6582 5976 8 1094 186 225 0 0 chr5 66836604 66836644 -85700615 - L3 LINE CR1 -3606 883 844 8 1094 297 245 95 142 chr5 66836936 66837126 -85700133 + B3A SINE B2 16 196 -2 8 1094 591 138 98 27 chr5 66838608 66838720 -85698539 - B2_Mm2 SINE B2 -74 121 2 8 1094 1438 75 37 0 chr5 66838738 66838926 -85698333 - B2_Mm2 SINE B2 0 195 1 8 1094 4754 63 22 2 chr5 66838959 66839561 -85697698 + L1Md_F2 LINE L1 5967 6580 -2 8 1094 675 240 16 74 chr5 66839563 66839752 -85697507 - B3 SINE B2 -1 215 38 8 1094 530 265 140 6 chr5 66839910 66840081 -85697178 + B4A SINE B4 21 214 -78 8 1094 213 39 0 0 chr5 66840081 66840107 -85697152 + (CTAA)n Simple_repeat Simple_repeat 1 26 0 8 1094 470 294 44 0 chr5 66840131 66840267 -85696992 + RSINE1 SINE B4 5 146 -19 8 1094 214 50 50 0 chr5 66840525 66840565 -85696694 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 8 1094 314 254 75 0 chr5 66840650 66840717 -85696542 - ID4 SINE ID -2 81 10 8 1094 295 241 17 17 chr5 66840944 66841003 -85696256 - MER2 DNA MER2_type 0 345 287 8 1094 485 284 168 0 chr5 66841020 66841175 -85696084 - MER2 DNA MER2_type -164 181 1 8 1094 254 300 77 50 chr5 66842115 66842375 -85694884 - MamRep434 DNA TcMar -56 370 104 8 1094 217 222 0 0 chr5 66844176 66844221 -85693038 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1095 363 265 45 154 chr5 66847107 66847263 -85689996 + B1F SINE Alu 1 139 -10 9 1095 459 288 43 14 chr5 66848007 66848148 -85689111 - ID_B1 SINE B4 0 224 80 9 1095 24 0 0 0 chr5 66848160 66848184 -85689075 + AT_rich Low_complexity Low_complexity 1 24 0 9 1095 183 346 51 13 chr5 66848226 66848305 -85688954 - L2a LINE L2 0 3426 3345 9 1095 437 267 236 74 chr5 66848468 66848786 -85688473 + MTE2b LTR MaLR 10 378 -1 9 1095 469 248 0 9 chr5 66849255 66849365 -85687894 + PB1D7 SINE Alu 1 109 -11 9 1095 396 0 0 0 chr5 66849407 66849451 -85687808 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1095 1165 76 6 50 chr5 66850512 66850691 -85686568 - L1_Mus1 LINE L1 0 6567 6397 9 1095 2327 114 23 44 chr5 66851805 66852191 -85685068 + ORR1C1 LTR MaLR 1 378 0 9 1095 242 315 123 26 chr5 66852389 66852503 -85684756 - RMER15 LTR ERVL -108 467 343 9 1095 533 167 0 13 chr5 66852729 66852832 -85684427 - B1_Mus2 SINE Alu -1 146 24 9 1095 399 324 32 65 chr5 66854434 66854589 -85682670 - B4A SINE B4 -19 273 124 9 1095 231 329 14 54 chr5 66854622 66854696 -85682563 - ID_B1 SINE B4 -105 119 49 9 1095 661 298 82 31 chr5 66854733 66854989 -85682270 + B4 SINE B4 1 269 -23 9 1095 306 0 0 0 chr5 66854991 66855025 -85682234 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1095 1570 193 68 35 chr5 66856308 66856646 -85680613 + ORR1D1 LTR MaLR 26 374 0 9 1095 403 306 109 56 chr5 66856773 66857058 -85680201 + MER3 DNA MER1_type 11 186 -2438 9 1095 418 191 264 100 chr5 66857357 66857576 -85679683 + B4 SINE B4 2 272 -20 9 1095 1295 67 11 0 chr5 66857576 66857754 -85679505 + (CACG)n Simple_repeat Simple_repeat 1 180 0 9 1095 418 191 264 100 chr5 66857754 66857784 -85679475 + B4 SINE B4 273 292 0 9 1095 243 88 0 0 chr5 66857784 66857818 -85679441 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1095 1584 172 176 22 chr5 66858410 66858773 -85678486 + MTD LTR MaLR 1 419 0 9 1095 293 367 119 23 chr5 66859645 66860030 -85677229 - MER20B DNA MER1_type -165 618 197 9 1095 226 340 32 128 chr5 66862334 66862553 -85674706 + MLT1H LTR MaLR 238 435 -114 9 1095 758 251 23 23 chr5 66862921 66863092 -85674167 - B4 SINE B4 -119 173 3 9 1095 329 270 113 77 chr5 66863636 66863857 -85673402 - L1MC5 LINE L1 -797 7164 6936 9 1095 611 248 120 9 chr5 66864182 66864389 -85672870 - B3A SINE B2 0 216 2 9 1095 355 267 58 0 chr5 66864429 66864515 -85672744 + L2c LINE L2 3295 3385 -2 9 1095 393 348 0 9 chr5 66864647 66864763 -85672496 - PB1D7 SINE Alu 0 120 6 9 1095 275 260 122 85 chr5 66865664 66865828 -85671431 - RMER13A LTR ERVK -673 187 18 9 1095 236 333 0 0 chr5 66866565 66866643 -85670616 + GA-rich Low_complexity Low_complexity 1 78 0 9 1095 990 273 46 8 chr5 66866971 66867233 -85670026 + B4 SINE B4 1 272 -20 9 1095 520 239 60 87 chr5 66867531 66867882 -85669377 + MTEa LTR MaLR 18 379 0 9 1095 861 256 86 70 chr5 66868307 66868829 -85668430 + RLTR12B LTR ERVK 1 485 -43 9 1095 451 254 0 73 chr5 66868891 66869014 -85668245 + Lx9 LINE L1 6763 6876 -768 9 1095 1712 158 147 12 chr5 66869164 66869573 -85667686 + Lx9 LINE L1 7181 7644 0 9 1095 360 64 0 0 chr5 66869574 66869621 -85667638 + (GA)n Simple_repeat Simple_repeat 2 48 0 9 1095 253 234 216 29 chr5 66870527 66870709 -85666550 - MLT1J LTR MaLR -79 531 233 9 1095 381 347 29 11 chr5 66872279 66872454 -85664805 - MTEb LTR MaLR -4 375 198 9 1095 263 258 320 16 chr5 66872526 66872648 -85664611 + MIR SINE MIR 14 172 -90 9 1095 246 189 18 54 chr5 66873633 66873689 -85663570 - PB1D7 SINE Alu -1 119 66 9 1095 310 316 26 0 chr5 66873909 66874023 -85663236 + PB1D7 SINE Alu 1 117 -3 9 1095 351 121 0 0 chr5 66874030 66874088 -85663171 + (CATA)n Simple_repeat Simple_repeat 2 59 0 9 1095 786 282 86 22 chr5 66875191 66875459 -85661800 + B4A SINE B4 1 285 -7 9 1095 210 284 0 0 chr5 66875464 66875531 -85661728 + (CA)n Simple_repeat Simple_repeat 1 67 0 9 1095 1255 58 58 0 chr5 66875547 66875718 -85661541 + B2_Mm2 SINE B2 1 181 -14 9 1095 505 246 138 29 chr5 66875760 66875999 -85661260 + L1M4 LINE L1 4382 4646 -1500 9 1095 353 232 76 51 chr5 66876051 66876169 -85661090 + L1M4 LINE L1 4975 5095 -1051 9 1095 252 86 0 0 chr5 66876215 66876250 -85661009 + (G)n Simple_repeat Simple_repeat 1 35 0 9 1095 590 317 117 5 chr5 66876451 66876527 -85660732 + L1M4 LINE L1 5389 5476 -702 9 1095 261 0 0 0 chr5 66876527 66876556 -85660703 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1095 590 317 117 5 chr5 66876556 66876872 -85660387 + L1M4 LINE L1 5477 5824 -354 9 1095 407 250 52 26 chr5 66876883 66876998 -85660261 + MLT1D LTR MaLR 384 501 -4 9 1095 2725 112 28 33 chr5 66877575 66877998 -85659261 + MTC LTR MaLR 1 421 0 9 1095 1146 245 35 24 chr5 66878777 66879032 -85658227 + ORR1C1 LTR MaLR 121 378 0 9 1095 284 182 55 0 chr5 66881850 66881905 -85655354 - MER58D DNA MER1_type -45 341 284 9 1095 914 224 51 0 chr5 66882051 66882247 -85655012 - B3 SINE B2 -7 209 4 9 1095 275 309 12 0 chr5 66883175 66883256 -85654003 + GA-rich Low_complexity Low_complexity 2 83 0 9 1095 1365 136 5 9 chr5 66884623 66884845 -85652414 - URR1A DNA MER1_type -1 225 5 9 1095 499 287 6 141 chr5 66885614 66885947 -85651312 + B4A SINE B4 2 289 -3 9 1095 234 0 0 0 chr5 66886307 66886333 -85650926 + (TCTG)n Simple_repeat Simple_repeat 4 29 0 9 1095 3150 101 39 13 chr5 66887612 66888075 -85649184 + MT2C_Mm LTR ERVL 1 475 0 9 1095 365 0 22 0 chr5 66888104 66888149 -85649110 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1095 191 62 62 0 chr5 66889020 66889052 -85648207 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 9 1095 198 0 0 0 chr5 66889333 66889355 -85647904 + (TCTG)n Simple_repeat Simple_repeat 4 25 0 9 1095 245 91 0 0 chr5 66890084 66890117 -85647142 - ID_B1 SINE B4 -11 213 181 9 1095 789 285 169 57 chr5 66890404 66890932 -85646327 + RLTR18 LTR ERVK 5 591 -25 9 1095 2044 168 73 14 chr5 66890991 66891360 -85645899 - ORR1B1 LTR MaLR 0 394 4 9 1095 1016 157 203 35 chr5 66891448 66891834 -85645425 - RMER6B LTR ERVK -10 451 1 9 1095 901 113 157 0 chr5 66893318 66893477 -85643782 + ORR1B2 LTR MaLR 2 185 -182 9 1095 1596 93 20 134 chr5 66893477 66893833 -85643426 + L1_Rod LINE L1 2797 3131 -2716 9 1095 418 254 110 55 chr5 66893933 66894170 -85643089 + B4A SINE B4 3 252 -40 9 1095 302 0 0 26 chr5 66894170 66894209 -85643050 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1095 536 305 19 38 chr5 66894486 66894643 -85642616 + RSINE1 SINE B4 8 161 -4 9 1095 318 343 105 92 chr5 66894795 66895100 -85642159 + MLT1N2 LTR MaLR 34 342 -220 9 1095 35 0 0 0 chr5 66896137 66896172 -85641087 + AT_rich Low_complexity Low_complexity 1 35 0 9 1095 351 0 0 0 chr5 66896458 66896497 -85640762 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1095 506 272 191 9 chr5 66896499 66896729 -85640530 - B4A SINE B4 -18 274 3 9 1095 516 308 85 53 chr5 66896917 66897242 -85640017 - Lx7 LINE L1 -1472 6001 5667 9 1095 303 28 0 0 chr5 66897242 66897278 -85639981 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1095 579 238 271 21 chr5 66897307 66897600 -85639659 + L1M4 LINE L1 4266 4631 -1515 9 1095 1136 59 0 0 chr5 66898684 66898820 -85638439 + B1_Mus1 SINE Alu 2 137 -11 9 1095 450 0 0 0 chr5 66898820 66898870 -85638389 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 9 1095 982 188 43 14 chr5 66898923 66899133 -85638126 - B3 SINE B2 0 216 1 9 1095 291 113 0 0 chr5 66900741 66900794 -85636465 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1095 237 98 0 0 chr5 66901394 66901435 -85635824 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 9 1095 620 224 108 14 chr5 66901462 66901675 -85635584 - B4A SINE B4 -2 290 58 9 1095 243 146 0 0 chr5 66902076 66902117 -85635142 + (CCCCCT)n Simple_repeat Simple_repeat 3 43 0 9 1095 287 205 67 67 chr5 66903771 66903891 -85633368 - PB1D7 SINE Alu 0 120 1 9 1095 652 264 7 0 chr5 66903922 66904062 -85633197 + RSINE1 SINE B4 8 148 -17 9 1095 21 36 0 0 chr5 66904091 66904119 -85633140 + AT_rich Low_complexity Low_complexity 1 28 0 9 1095 862 146 0 0 chr5 66904206 66904343 -85632916 - B1_Mus2 SINE Alu 0 147 11 9 1095 21 57 0 0 chr5 66905295 66905330 -85631929 + AT_rich Low_complexity Low_complexity 1 35 0 9 1095 415 318 19 31 chr5 66905660 66905819 -85631440 + RSINE1 SINE B4 9 165 0 9 1095 720 294 0 0 chr5 66906768 66906931 -85630328 + RSINE1 SINE B4 3 165 0 9 1095 1453 65 21 0 chr5 66906962 66907148 -85630111 + B2_Mm1t SINE B2 1 190 -3 9 1095 724 297 16 8 chr5 66907658 66907906 -85629353 + Tigger9b DNA MER2_type 96 345 -279 9 1095 32 26 0 0 chr5 66908530 66908569 -85628690 + AT_rich Low_complexity Low_complexity 1 39 0 9 1095 221 320 39 0 chr5 66909371 66909449 -85627810 - PB1D10 SINE Alu -36 81 1 9 1095 625 249 154 34 chr5 66909761 66909969 -85627290 + Lx8 LINE L1 7061 7293 -180 9 1095 180 97 0 0 chr5 66910174 66910205 -85627054 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 9 1095 23 0 0 0 chr5 66911144 66911167 -85626092 + AT_rich Low_complexity Low_complexity 1 23 0 9 1095 378 299 10 74 chr5 66911317 66911476 -85625783 + L1MC4 LINE L1 6855 7005 -1037 9 1095 387 273 84 32 chr5 66911476 66911631 -85625628 + RSINE1 SINE B4 3 165 0 9 1095 378 299 10 74 chr5 66911631 66911665 -85625594 + L1MC4 LINE L1 7006 7035 -1007 9 1095 302 45 23 0 chr5 66911665 66911709 -85625550 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1095 330 288 49 25 chr5 66911711 66911914 -85625345 + L1MC4 LINE L1 7162 7369 -673 9 1095 1114 139 5 46 chr5 66912027 66912223 -85625036 - URR1B DNA MER1_type -14 211 24 1 1095 229 244 162 49 chr5 66912228 66912370 -85624889 + L1MC4 LINE L1 7575 7732 -310 9 1095 241 49 0 0 chr5 66912973 66913014 -85624245 + L1Md_T LINE L1 6542 6582 0 1 1095 201 139 0 0 chr5 66914291 66914334 -85622925 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1095 242 115 0 19 chr5 66915372 66915425 -85621834 + (TTTTA)n Simple_repeat Simple_repeat 3 54 0 1 1095 229 117 33 0 chr5 66915789 66915849 -85621410 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 1 1095 192 97 0 0 chr5 66916217 66916248 -85621011 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1095 413 232 25 53 chr5 66916458 66916601 -85620658 + L1MC3 LINE L1 7649 7771 -14 1 1095 228 314 0 0 chr5 66916786 66916856 -85620403 - ID_B1 SINE B4 -70 154 85 1 1095 694 246 35 15 chr5 66917269 66917467 -85619792 + RMER15-int LTR ERVL 4581 4782 -217 1 1095 558 256 198 8 chr5 66917494 66917762 -85619497 + Lx8 LINE L1 6936 7254 -219 1 1095 952 104 11 23 chr5 66917815 66917992 -85619267 + (GGAGA)n Simple_repeat Simple_repeat 2 176 0 1 1095 342 45 0 0 chr5 66918216 66918260 -85618999 + (TCTG)n Simple_repeat Simple_repeat 1 44 0 1 1095 505 304 50 0 chr5 66918810 66918971 -85618288 - Tigger5 DNA MER2_type -2199 207 39 1 1095 258 211 30 16 chr5 66920286 66920359 -85616900 - MTE2a LTR MaLR 0 379 306 1 1095 349 253 40 40 chr5 66920370 66920469 -85616790 - MTE2a LTR MaLR -115 264 166 1 1095 364 107 0 39 chr5 66920490 66920568 -85616691 + (TTA)n Simple_repeat Simple_repeat 2 76 0 1 1095 228 67 0 0 chr5 66920567 66920597 -85616662 + (TTC)n Simple_repeat Simple_repeat 1 30 0 1 1095 920 212 120 0 chr5 66920617 66920801 -85616458 - B3 SINE B2 -10 206 1 1 1095 225 0 0 0 chr5 66921553 66921578 -85615681 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1095 198 321 55 35 chr5 66921934 66922079 -85615180 + L2a LINE L2 3279 3426 0 1 1095 237 351 47 26 chr5 66922347 66922540 -85614719 - MER58B DNA MER1_type -18 323 127 1 1095 360 0 0 0 chr5 66922738 66922778 -85614481 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1095 262 325 64 13 chr5 66923112 66923268 -85613991 + RSINE1 SINE B4 2 165 0 1 1095 322 314 10 0 chr5 66923269 66923371 -85613888 + (CA)n Simple_repeat Simple_repeat 2 104 0 1 1095 308 89 36 0 chr5 66923400 66923456 -85613803 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 1 1095 482 254 221 71 chr5 66924625 66924951 -85612308 - MLT1B LTR MaLR -11 379 5 1 1095 306 180 0 0 chr5 66925274 66925335 -85611924 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1095 239 148 0 36 chr5 66925677 66925733 -85611526 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 1 1095 293 342 157 3 chr5 66925984 66926277 -85610982 - L2 LINE L2 -353 3066 2729 1 1095 423 0 0 0 chr5 66927301 66927348 -85609911 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1095 560 269 0 8 chr5 66928872 66928992 -85608267 - RSINE1 SINE B4 -46 119 1 1 1095 278 290 129 42 chr5 66930900 66931163 -85606096 + L1M4 LINE L1 4823 5108 -1038 1 1095 365 282 34 0 chr5 66931181 66931298 -85605961 + B1F1 SINE Alu 13 133 -16 1 1095 1766 138 3 42 chr5 66931473 66931784 -85605475 + MTC LTR MaLR 1 299 -122 1 1095 266 135 0 39 chr5 66931875 66931952 -85605307 + T-rich Low_complexity Low_complexity 1 74 0 1 1095 1195 49 7 0 chr5 66931953 66932097 -85605162 - B1_Mus2 SINE Alu -1 146 2 1 1095 597 259 5 84 chr5 66932213 66932403 -85604856 - MTD LTR MaLR -244 175 1 1 1095 447 220 210 20 chr5 66932474 66932669 -85604590 + L1MC2 LINE L1 6105 6336 -8 1 1095 385 267 0 12 chr5 66933472 66933639 -85603620 + (TA)n Simple_repeat Simple_repeat 2 166 0 1 1095 234 0 0 0 chr5 66936703 66936729 -85600530 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 1 1095 953 116 0 52 chr5 66937480 66937635 -85599624 + B1_Mur3 SINE Alu 3 149 0 1 1095 200 114 68 0 chr5 66937638 66937682 -85599577 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1095 1629 309 113 9 chr5 66939756 66940457 -85596802 + Lx8 LINE L1 6573 7346 -127 1 1095 534 31 0 0 chr5 66940940 66941004 -85596255 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 1095 423 0 0 0 chr5 66941004 66941050 -85596209 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1095 23 0 0 0 chr5 66941290 66941313 -85595946 + AT_rich Low_complexity Low_complexity 1 23 0 1 1095 311 256 0 91 chr5 66942645 66942689 -85594570 + MTE2b LTR MaLR 9 52 -327 1 1095 934 132 299 0 chr5 66942689 66942863 -85594396 + URR1A DNA MER1_type 1 226 0 1 1095 311 256 0 91 chr5 66942863 66942917 -85594342 + MTE2b LTR MaLR 53 98 -281 1 1095 593 255 121 94 chr5 66942996 66943303 -85593956 + MTE2a LTR MaLR 1 315 -64 1 1095 517 251 19 7 chr5 66943306 66943451 -85593808 + MTE2b LTR MaLR 224 373 -6 1 1095 1727 251 64 88 chr5 66943511 66944166 -85593093 - RLTR26 LTR ERVK -3 639 1 1 1095 319 286 116 16 chr5 66944445 66944566 -85592693 + MER3 DNA MER1_type 1 133 -76 1 1095 306 0 0 0 chr5 66945723 66945757 -85591502 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1095 1138 218 57 36 chr5 66945848 66946129 -85591130 + B4 SINE B4 2 288 -4 1 1095 550 286 6 64 chr5 66946147 66946319 -85590940 + RSINE1 SINE B4 1 162 -3 1 1095 279 0 0 0 chr5 66947528 66947559 -85589700 + (CTCA)n Simple_repeat Simple_repeat 2 32 0 1 1095 276 309 183 27 chr5 66947710 66947896 -85589363 + MIRb SINE MIR 23 237 -31 1 1095 346 273 162 71 chr5 66948678 66948971 -85588288 + ORR1E LTR MaLR 13 353 -6 1 1095 1131 210 184 3 chr5 66948981 66949297 -85587962 - ORR1D1 LTR MaLR 0 374 2 1 1095 223 272 89 74 chr5 66950377 66950512 -85586747 - MIR SINE MIR -71 191 55 1 1095 204 135 0 0 chr5 66951472 66951509 -85585750 + (GGGA)n Simple_repeat Simple_repeat 2 38 0 1 1095 780 171 192 6 chr5 66952258 66952435 -85584824 + B3 SINE B2 2 211 -5 1 1095 328 361 8 0 chr5 66952607 66952726 -85584533 + ID_B1 SINE B4 82 201 -23 1 1095 675 0 0 0 chr5 66952726 66952801 -85584458 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 1 1095 387 172 8 0 chr5 66952801 66952923 -85584336 + GA-rich Low_complexity Low_complexity 1 123 0 1 1095 2589 56 267 0 chr5 66955330 66955571 -85581688 + MT2C_Mm LTR ERVL 1 285 -190 1 1095 465 19 0 0 chr5 66955571 66955625 -85581634 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1095 2589 56 267 0 chr5 66955625 66955758 -85581501 + MT2C_Mm LTR ERVL 286 473 -2 1 1095 1885 122 24 56 chr5 66955778 66956118 -85581141 - ORR1A4 LTR MaLR 0 329 1 1 1095 242 341 0 12 chr5 66956401 66956487 -85580772 - MER21B LTR ERV1 -516 347 263 1 1095 613 319 96 26 chr5 66957111 66957442 -85579817 - Tigger7 DNA MER2_type -14 536 180 1 1095 779 296 42 5 chr5 66957495 66957701 -85579558 - MER44B DNA MER2_type -320 230 17 1 1095 1127 70 0 0 chr5 66957701 66957844 -85579415 + B2_Mm2 SINE B2 3 145 -50 1 1095 285 182 0 0 chr5 66957864 66957919 -85579340 + GA-rich Low_complexity Low_complexity 2 56 0 1 1095 278 295 84 0 chr5 66958022 66958117 -85579142 - PB1D10 SINE Alu -6 111 9 1 1095 397 333 0 16 chr5 66958776 66958904 -85578355 + B4A SINE B4 166 291 -1 1 1095 460 325 17 0 chr5 66959032 66959152 -85578107 - RSINE1 SINE B4 -40 125 4 1 1095 235 264 52 0 chr5 66959863 66959880 -85577379 + ID SINE ID 66 86 -206 1 1095 256 262 288 0 chr5 66959880 66959960 -85577299 + PB1D10 SINE Alu 1 103 -14 1 1095 409 263 63 11 chr5 66960194 66960380 -85576879 + L1MC4a LINE L1 7696 7880 -2 1 1095 366 269 68 88 chr5 66960636 66960783 -85576476 + MamRep605 Unknown Unknown 612 755 -121 1 1095 254 225 95 63 chr5 66961025 66961120 -85576139 + RMER15 LTR ERVL 359 456 -119 1 1095 1166 226 37 158 chr5 66961140 66961192 -85576067 - MTE2a LTR MaLR 0 379 326 1 1095 727 197 23 0 chr5 66961192 66961324 -85575935 + B1_Mur1 SINE Alu 2 136 -13 1 1095 1166 226 37 158 chr5 66961324 66961702 -85575557 - MTE2a LTR MaLR -54 325 1 1 1095 388 152 0 0 chr5 66961702 66961761 -85575498 + L1_Mur3 LINE L1 5377 5435 -445 1 1095 4446 210 9 16 chr5 66961780 66962659 -85574600 + Lx7 LINE L1 6407 7279 -417 1 1095 343 296 60 9 chr5 66962728 66962844 -85574415 + MTE-int LTR MaLR 349 470 -1110 1 1095 437 115 52 17 chr5 66962846 66962961 -85574298 + (TAGA)n Simple_repeat Simple_repeat 3 121 0 1 1095 952 109 29 0 chr5 66962972 66963147 -85574112 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1095 323 302 0 0 chr5 66963334 66963420 -85573839 + MTE-int LTR MaLR 623 708 -872 1 1095 986 274 114 78 chr5 66965030 66965747 -85571512 + Charlie10 DNA MER1_type 2037 2779 -43 1 1095 413 370 81 38 chr5 66965775 66966120 -85571139 + Tigger13a DNA MER2_type 152 511 -260 1 1095 338 203 15 92 chr5 66966185 66966308 -85570951 - PB1D10 SINE Alu 0 120 10 1 1095 702 163 220 12 chr5 66966447 66966615 -85570644 - B3 SINE B2 -12 204 2 1 1095 1130 36 65 0 chr5 66967107 66967246 -85570013 + B1_Mus1 SINE Alu 1 148 0 1 1095 190 0 67 0 chr5 66967610 66967640 -85569619 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1095 774 171 8 8 chr5 66968897 66969027 -85568232 + B1_Mur1 SINE Alu 2 131 -18 1 1095 2017 29 8 12 chr5 66969102 66969348 -85567911 - L1Md_F3 LINE L1 -1 6583 6339 1 1095 549 44 0 0 chr5 66969353 66969421 -85567838 + (GGA)n Simple_repeat Simple_repeat 3 70 0 1 1095 264 282 0 0 chr5 66969916 66969987 -85567272 + MER46C DNA MER2_type 264 334 -4 1 1095 300 27 0 0 chr5 66970191 66970228 -85567031 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1095 198 296 115 44 chr5 66970484 66970597 -85566662 - MIRc SINE MIR -129 139 19 1 1095 1400 84 10 20 chr5 66970909 66971104 -85566155 + B2_Mm2 SINE B2 1 193 -2 1 1095 729 182 13 47 chr5 66971515 66971665 -85565594 + B1F SINE Alu 4 148 -1 1 1095 674 256 0 0 chr5 66971718 66971843 -85565416 + B1_Mur2 SINE Alu 12 136 -13 1 1095 1426 244 95 14 chr5 66972717 66973088 -85564171 - MTD LTR MaLR -14 405 13 1 1095 559 303 194 6 chr5 66973766 66974234 -85563025 + L2 LINE L2 1931 2486 -933 1 1095 473 215 106 21 chr5 66975672 66975808 -85561451 - B1F SINE Alu -5 144 32 1 1095 274 271 66 109 chr5 66976054 66976086 -85561173 - ID_B1 SINE B4 0 224 94 1 1095 362 281 0 86 chr5 66976086 66976191 -85561068 - PB1D10 SINE Alu -9 108 13 1 1095 1594 112 11 72 chr5 66976189 66976468 -85560791 - ORR1A4 LTR MaLR -67 262 1 1 1095 4333 80 0 2 chr5 66976561 66977147 -85560112 + L1_Mus4 LINE L1 6066 6636 0 1 1096 199 321 24 47 chr5 66978108 66978193 -85559066 - MIRm SINE MIR -160 116 34 1 1096 1303 187 129 20 chr5 66978885 66979180 -85558079 - ORR1D1 LTR MaLR -45 329 3 1 1096 1212 193 28 0 chr5 66979771 66979989 -85557270 - URR1B DNA MER1_type 0 225 2 1 1096 606 328 88 91 chr5 66980077 66980450 -85556809 + MLT1A LTR MaLR 1 372 -2 1 1096 291 266 215 7 chr5 66980630 66980844 -85556415 + L1ME3B LINE L1 5681 5932 -241 1 1096 378 223 155 0 chr5 66981005 66981108 -85556151 + PB1D7 SINE Alu 1 119 -1 1 1096 1090 165 79 14 chr5 66981118 66981333 -85555926 - MTD LTR MaLR -11 408 180 1 1096 324 0 0 0 chr5 66981458 66981494 -85555765 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1096 299 305 30 40 chr5 66981494 66981593 -85555666 + PB1 SINE Alu 3 100 -27 1 1096 381 289 8 16 chr5 66981511 66981634 -85555625 + ID_B1 SINE B4 98 219 -5 1 1096 1066 272 110 30 chr5 66982194 66982900 -85554359 + L1MA9 LINE L1 4837 5599 -713 1 1096 526 271 0 35 chr5 66983060 66983205 -85554054 + B1F2 SINE Alu 5 144 -5 1 1096 386 292 146 68 chr5 66983257 66983833 -85553426 + L1MA9 LINE L1 5648 6268 -44 1 1096 306 0 0 0 chr5 66983862 66983896 -85553363 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1096 915 185 7 0 chr5 66984348 66984494 -85552765 + B1_Mur1 SINE Alu 2 148 -1 1 1096 793 63 50 0 chr5 66984497 66984656 -85552603 + (TGGA)n Simple_repeat Simple_repeat 4 170 0 1 1096 198 0 0 0 chr5 66984770 66984792 -85552467 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1096 280 368 56 78 chr5 66984892 66985213 -85552046 + ORR1E LTR MaLR 3 316 -43 1 1096 284 342 118 10 chr5 66985532 66985727 -85551532 - MIRb SINE MIR -52 216 1 1 1096 224 313 118 78 chr5 66986326 66986648 -85550611 + L2c LINE L2 2567 2901 -518 1 1096 1002 71 0 0 chr5 66986653 66986780 -85550479 + B1_Mus1 SINE Alu 22 148 0 1 1096 291 71 0 0 chr5 66986787 66986829 -85550430 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1096 214 200 0 0 chr5 66986963 66986998 -85550261 + B1F1 SINE Alu 57 91 -58 1 1096 182 33 0 62 chr5 66986999 66987031 -85550228 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1096 186 348 80 60 chr5 66988122 66988272 -85548987 + L2c LINE L2 2989 3141 -246 1 1096 181 338 0 40 chr5 66988504 66988578 -85548681 - MIR SINE MIR -62 200 130 1 1096 544 330 43 43 chr5 66988902 66989184 -85548075 - MLT1C LTR MaLR -181 286 5 1 1096 237 338 0 61 chr5 66989624 66989663 -85547596 - B4A SINE B4 -4 288 254 1 1096 2500 89 6 0 chr5 66989663 66989988 -85547271 + ORR1A2 LTR MaLR 1 327 0 1 1096 237 338 0 61 chr5 66989988 66990030 -85547229 - B4A SINE B4 -39 253 212 1 1096 350 215 0 21 chr5 66990087 66990182 -85547077 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 1 1096 2513 156 45 49 chr5 66990219 66990675 -85546584 + RLTR11A LTR ERVK 4 458 -70 1 1096 207 0 0 0 chr5 66990675 66990698 -85546561 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1096 2513 156 45 49 chr5 66990698 66990768 -85546491 + RLTR11A LTR ERVK 459 528 0 1 1096 666 209 214 51 chr5 66990797 66991054 -85546205 + ORR1C2 LTR MaLR 86 384 0 1 1096 461 223 53 67 chr5 66992511 66992721 -85544538 + B4A SINE B4 15 292 0 1 1096 411 295 48 24 chr5 66992793 66992918 -85544341 + RSINE1 SINE B4 5 132 -33 1 1096 31 44 0 0 chr5 66992930 66992975 -85544284 + AT_rich Low_complexity Low_complexity 1 45 0 1 1096 421 238 0 0 chr5 66992994 66993078 -85544181 + B1F SINE Alu 37 120 -29 1 1096 26 0 0 0 chr5 66993217 66993243 -85544016 + AT_rich Low_complexity Low_complexity 1 26 0 1 1096 809 235 48 10 chr5 66993315 66993521 -85543738 + B3 SINE B2 3 216 0 1 1096 348 276 65 29 chr5 66994021 66994159 -85543100 - L1MB3 LINE L1 -33 6150 6008 1 1096 275 315 0 0 chr5 66995484 66995595 -85541664 + (CCCTG)n Simple_repeat Simple_repeat 5 115 0 1 1096 186 171 0 0 chr5 66995619 66995660 -85541599 + (CCCTG)n Simple_repeat Simple_repeat 5 45 0 1 1096 231 349 14 0 chr5 66995762 66995908 -85541351 + (CCCTG)n Simple_repeat Simple_repeat 5 152 0 1 1096 23 0 0 0 chr5 66996109 66996132 -85541127 + GC_rich Low_complexity Low_complexity 1 23 0 1 1096 204 67 0 0 chr5 66996818 66996848 -85540411 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 1096 31 0 0 0 chr5 66997336 66997367 -85539892 + AT_rich Low_complexity Low_complexity 1 31 0 1 1096 465 287 69 19 chr5 66998930 66999090 -85538169 + MER5A DNA MER1_type 1 168 -21 1 1096 1061 135 12 0 chr5 66999831 66999994 -85537265 + ORR1D1 LTR MaLR 1 165 -209 1 1096 186 191 0 0 chr5 67000004 67000051 -85537208 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 1096 1110 158 44 10 chr5 67000062 67000266 -85536993 + ORR1C2 LTR MaLR 174 384 0 2 1096 304 293 218 0 chr5 67001324 67001457 -85535802 - MER20 DNA MER1_type -40 179 18 3 1096 225 314 0 14 chr5 67001700 67001771 -85535488 + L2a LINE L2 3357 3426 0 4 1096 214 299 228 15 chr5 67003136 67003272 -85533987 + MIRb SINE MIR 89 253 -15 5 1096 904 121 0 67 chr5 67003635 67003785 -85533474 - B1_Mus1 SINE Alu -6 142 3 6 1096 955 225 69 18 chr5 67003786 67004003 -85533256 - B4A SINE B4 -60 232 5 7 1096 195 42 0 0 chr5 67004139 67004163 -85533096 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1096 253 237 85 85 chr5 67004740 67004846 -85532413 - Charlie18a DNA MER1_type -130 212 107 9 1096 180 77 0 0 chr5 67005445 67005471 -85531788 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1 1096 185 322 16 33 chr5 67006515 67006576 -85530683 - MIR SINE MIR -83 125 66 1 1096 501 328 72 72 chr5 67007114 67007406 -85529853 + B4 SINE B4 1 292 0 1 1096 204 265 10 48 chr5 67010007 67010110 -85527149 + (CGGGG)n Simple_repeat Simple_repeat 4 102 0 1 1096 211 350 74 18 chr5 67010583 67010746 -85526513 - MER5A DNA MER1_type 0 189 18 1 1096 26 30 0 0 chr5 67011600 67011633 -85525626 + GC_rich Low_complexity Low_complexity 1 33 0 1 1096 317 211 136 11 chr5 67012531 67012656 -85524603 + PB1D10 SINE Alu 21 138 -11 1 1096 740 141 172 0 chr5 67012913 67013041 -85524218 + B2_Mm2 SINE B2 1 150 -45 1 1096 186 43 0 0 chr5 67013042 67013065 -85524194 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1096 623 229 15 0 chr5 67013246 67013377 -85523882 + B1_Mur1 SINE Alu 1 133 -16 1 1096 646 227 16 0 chr5 67013620 67013748 -85523511 - ID_B1 SINE B4 -4 220 91 2 1096 251 200 28 84 chr5 67013870 67013911 -85523348 + T-rich Low_complexity Low_complexity 96 137 0 2 1096 579 237 8 0 chr5 67013911 67014029 -85523230 - PB1D7 SINE Alu -1 119 1 2 1096 251 200 28 84 chr5 67014029 67014129 -85523130 + T-rich Low_complexity Low_complexity 4 95 0 2 1096 321 26 0 0 chr5 67014129 67014167 -85523092 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1096 1468 304 4 48 chr5 67014170 67014668 -85522591 - RMER5 LTR ERV1 -10 524 49 2 1096 286 219 103 64 chr5 67014851 67014929 -85522330 - B1_Mur4 SINE Alu -61 89 9 2 1096 634 200 128 0 chr5 67014967 67015092 -85522167 + B1_Mur3 SINE Alu 1 141 -8 2 1096 3106 21 14 238 chr5 67015116 67015678 -85521581 + RLTR10C LTR ERVK 1 436 0 2 1096 305 276 102 0 chr5 67015687 67015785 -85521474 - MER3 DNA MER1_type -80 129 22 2 1096 1275 27 0 13 chr5 67015941 67016090 -85521169 + B1_Mm SINE Alu 1 147 0 3 1096 1199 104 71 0 chr5 67016116 67016298 -85520961 + B2_Mm2 SINE B2 1 195 0 3 1096 607 260 70 25 chr5 67017513 67017671 -85519588 + RSINE1 SINE B4 1 165 0 3 1096 594 274 25 25 chr5 67018414 67018575 -85518684 + RSINE1 SINE B4 3 163 -2 3 1096 204 40 0 0 chr5 67018879 67018904 -85518355 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1096 321 297 51 0 chr5 67019840 67019930 -85517329 - B1F1 SINE Alu -15 102 1 3 1096 790 176 162 81 chr5 67019969 67020167 -85517092 + B3 SINE B2 1 214 -2 3 1096 711 270 79 0 chr5 67020244 67020433 -85516826 + ID_B1 SINE B4 1 204 -20 3 1096 546 75 28 56 chr5 67020436 67020578 -85516681 + (CAGAGA)n Simple_repeat Simple_repeat 2 139 0 3 1096 314 272 100 71 chr5 67020578 67020748 -85516511 + L1MEg LINE L1 924 1098 -4986 3 1096 956 168 20 59 chr5 67021473 67021675 -85515584 - B2_Mm2 SINE B2 -1 194 1 4 1096 444 250 0 107 chr5 67021749 67021870 -85515389 - B1F1 SINE Alu -39 110 3 4 1096 375 327 0 114 chr5 67021870 67021918 -85515341 - ID_B1 SINE B4 -29 178 40 4 1096 862 216 27 38 chr5 67021933 67022116 -85515143 - B3 SINE B2 0 216 36 4 1096 859 193 181 6 chr5 67022131 67022313 -85514946 - B3 SINE B2 -1 215 2 4 1096 360 291 27 0 chr5 67022569 67022679 -85514580 + PB1D10 SINE Alu 1 113 -4 4 1096 337 296 0 0 chr5 67022988 67023059 -85514200 + ID4_ SINE ID 9 79 -4 4 1096 328 304 76 0 chr5 67023059 67023080 -85514179 + ID_B1 SINE B4 9 107 -117 4 1096 610 264 95 0 chr5 67023106 67023254 -85514005 + MLT1C LTR MaLR 300 461 -6 4 1096 429 269 128 0 chr5 67023632 67023788 -85513471 + L1MB2 LINE L1 5975 6150 -21 4 1096 360 0 0 0 chr5 67023861 67023901 -85513358 + (CCCCCA)n Simple_repeat Simple_repeat 3 42 0 5 1096 1520 141 195 26 chr5 67023958 67024265 -85512994 + RLTR15 LTR ERVK 1 359 0 5 1096 506 233 130 15 chr5 67024277 67024408 -85512851 - B1_Mur1 SINE Alu -2 147 2 5 1096 1497 292 101 56 chr5 67024471 67025262 -85511997 + Charlie2b DNA MER1_type 1906 2732 -50 5 1096 1069 29 14 23 chr5 67025399 67025621 -85511638 + (TG)n Simple_repeat Simple_repeat 1 219 0 5 1096 482 298 45 8 chr5 67025629 67025761 -85511498 - RSINE1 SINE B4 -25 140 4 5 1096 634 143 0 20 chr5 67025779 67025879 -85511380 - PB1D9 SINE Alu 0 120 23 5 1096 605 303 81 0 chr5 67026104 67026289 -85510970 + ID_B1 SINE B4 1 200 -24 5 1096 180 0 0 0 chr5 67026332 67026352 -85510907 + (CCA)n Simple_repeat Simple_repeat 1 20 0 5 1096 1793 207 54 27 chr5 67027376 67027759 -85509500 - MTD LTR MaLR 0 419 20 5 1096 333 0 0 0 chr5 67027759 67027796 -85509463 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1096 1793 207 54 27 chr5 67027796 67027819 -85509440 - MTD LTR MaLR -400 19 2 5 1096 605 261 68 42 chr5 67027847 67028039 -85509220 + B3A SINE B2 2 198 0 6 1096 380 260 106 0 chr5 67028506 67028610 -85508649 + PB1D10 SINE Alu 1 115 -2 6 1096 371 300 91 142 chr5 67028848 67029180 -85508079 - MTEb LTR MaLR -13 366 52 6 1096 252 306 194 30 chr5 67029032 67029197 -85508062 - MLT2B3 LTR ERVL -319 235 44 6 1096 905 114 8 0 chr5 67029223 67029355 -85507904 - B1_Mur4 SINE Alu -9 141 9 6 1096 345 198 24 138 chr5 67029249 67029372 -85507887 - MT2B LTR ERVL -337 264 156 6 1096 322 259 24 97 chr5 67029631 67029755 -85507504 + B3 SINE B2 25 139 -77 6 1096 369 0 0 0 chr5 67029763 67029804 -85507455 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1096 501 105 0 0 chr5 67029804 67029890 -85507369 + (GA)n Simple_repeat Simple_repeat 1 86 0 6 1096 1313 110 0 10 chr5 67029901 67030094 -85507165 + B2_Mm2 SINE B2 1 191 -4 7 1096 261 145 0 0 chr5 67030385 67030447 -85506812 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 1096 294 282 109 39 chr5 67030555 67030735 -85506524 - MIRb SINE MIR -49 219 10 7 1096 646 257 80 77 chr5 67031743 67032051 -85505208 + B4 SINE B4 1 268 -24 7 1096 721 149 6 22 chr5 67032064 67032243 -85505016 + (CA)n Simple_repeat Simple_repeat 1 176 0 7 1096 1378 284 14 17 chr5 67032410 67032765 -85504494 + MTE2b LTR MaLR 20 373 -6 7 1096 342 224 200 0 chr5 67032762 67032847 -85504412 + ORR1D1 LTR MaLR 273 374 0 7 1096 757 231 14 91 chr5 67033043 67033252 -85504007 + B3A SINE B2 6 198 0 7 1096 236 341 0 0 chr5 67033261 67033343 -85503916 + GA-rich Low_complexity Low_complexity 3 84 0 7 1096 180 348 29 14 chr5 67033628 67033698 -85503561 + MIRc SINE MIR 54 124 -144 7 1096 308 355 96 64 chr5 67033815 67034128 -85503131 + L1ME1 LINE L1 5842 6164 -15 8 1096 638 296 24 33 chr5 67034136 67034175 -85503084 - B3 SINE B2 -1 215 178 8 1096 1685 214 24 21 chr5 67034175 67034378 -85502881 - ORR1D1 LTR MaLR 0 374 167 8 1096 1344 30 0 0 chr5 67034378 67034543 -85502716 + (GGGAGA)n Simple_repeat Simple_repeat 2 166 0 8 1096 425 62 0 30 chr5 67034543 67034609 -85502650 + (CAGAGA)n Simple_repeat Simple_repeat 1 64 0 8 1096 1685 214 24 21 chr5 67034609 67034777 -85502482 - ORR1D1 LTR MaLR -208 166 2 8 1096 685 292 12 12 chr5 67034777 67034947 -85502312 - B3A SINE B2 -21 177 8 8 1096 1115 88 35 132 chr5 67035081 67035209 -85502050 + B2_Mm2 SINE B2 4 109 -86 8 1096 945 109 65 0 chr5 67035209 67035347 -85501912 - B1_Mus1 SINE Alu 0 148 2 8 1096 1115 88 35 132 chr5 67035347 67035415 -85501844 + B2_Mm2 SINE B2 110 181 -14 8 1096 1110 103 0 0 chr5 67035433 67035578 -85501681 + B1_Mus2 SINE Alu 3 147 0 8 1096 35 24 0 0 chr5 67035578 67035620 -85501639 + AT_rich Low_complexity Low_complexity 1 42 0 8 1096 1299 61 72 0 chr5 67035620 67035801 -85501458 + B2_Mm2 SINE B2 1 194 -1 8 1096 1028 257 10 56 chr5 67035981 67036088 -85501171 + B4A SINE B4 1 100 -192 9 1096 2433 163 42 2 chr5 67036088 67036493 -85500766 + MTC LTR MaLR 1 421 0 9 1096 1028 257 10 56 chr5 67036493 67036673 -85500586 + B4A SINE B4 101 275 -17 9 1096 636 302 88 51 chr5 67036751 67037077 -85500182 - L2 LINE L2 -757 2662 2324 9 1096 1881 169 145 3 chr5 67037077 67037422 -85499837 + ORR1B1 LTR MaLR 1 394 0 9 1096 636 302 88 51 chr5 67037422 67037504 -85499755 - L2 LINE L2 -1096 2323 2239 9 1096 573 267 130 66 chr5 67037572 67037949 -85499310 + L1M4 LINE L1 5351 5751 -433 9 1096 209 146 21 0 chr5 67037955 67038003 -85499256 + GA-rich Low_complexity Low_complexity 2 50 0 9 1096 504 238 90 7 chr5 67038277 67038421 -85498838 - L1M4 LINE L1 -5583 959 804 9 1096 288 223 11 102 chr5 67038477 67038565 -85498694 - B1F1 SINE Alu -20 97 10 9 1096 358 292 11 0 chr5 67038575 67038664 -85498595 - L1M4 LINE L1 -5811 731 642 9 1096 1347 238 48 11 chr5 67038823 67039176 -85498083 + ORR1D2 LTR MaLR 1 366 -4 9 1096 227 299 15 0 chr5 67039352 67039419 -85497840 - ID4_ SINE ID -13 70 3 9 1096 242 241 37 0 chr5 67039501 67039555 -85497704 - L1M4 LINE L1 -6122 420 365 9 1096 509 252 9 28 chr5 67039811 67039917 -85497342 + B1F1 SINE Alu 6 109 -40 1 1096 414 0 0 0 chr5 67039917 67039963 -85497296 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1096 354 343 56 63 chr5 67040154 67040406 -85496853 - L1MEe LINE L1 -3231 2915 2666 1 1096 389 280 223 0 chr5 67040438 67040613 -85496646 - ID_B1 SINE B4 -3 221 8 1 1096 364 283 131 16 chr5 67040603 67040725 -85496534 - B4A SINE B4 -51 241 106 1 1096 23 0 0 0 chr5 67040737 67040760 -85496499 + AT_rich Low_complexity Low_complexity 1 23 0 1 1096 216 0 0 0 chr5 67040785 67040809 -85496450 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1096 9086 143 20 63 chr5 67040830 67042446 -85494813 + RLTR21 LTR ERVK 1 1546 -26 1 1096 944 92 56 14 chr5 67042663 67042807 -85494452 - B1_Mur4 SINE Alu 0 150 1 1 1096 414 0 0 0 chr5 67042852 67042898 -85494361 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1096 673 234 41 28 chr5 67042963 67043108 -85494151 + B3 SINE B2 1 147 -69 1 1096 484 268 277 33 chr5 67043125 67043519 -85493740 - MER76 LTR ERVL -60 631 142 1 1096 299 347 0 0 chr5 67043519 67043692 -85493567 + G-rich Low_complexity Low_complexity 1 173 0 1 1096 334 335 0 0 chr5 67043782 67043949 -85493310 + G-rich Low_complexity Low_complexity 1 167 0 1 1096 573 250 37 31 chr5 67044071 67044232 -85493027 - RSINE1 SINE B4 -2 163 2 1 1096 206 42 20 59 chr5 67044416 67044467 -85492792 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1 1096 740 98 74 0 chr5 67044488 67044610 -85492649 - B2_Mm2 SINE B2 -50 145 15 1 1096 610 324 165 32 chr5 67044613 67045110 -85492149 - L1MEe LINE L1 -3869 2297 1735 1 1096 941 173 0 7 chr5 67045128 67045279 -85491980 + B1_Mur4 SINE Alu 1 150 0 1 1096 450 0 0 0 chr5 67045302 67045352 -85491907 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1096 356 291 106 61 chr5 67045477 67045553 -85491706 - L1MEe LINE L1 -4585 1581 1514 1 1096 719 267 67 10 chr5 67045553 67045761 -85491498 - ID_B1 SINE B4 -3 221 2 1 1096 356 291 106 61 chr5 67045761 67045929 -85491330 - L1MEe LINE L1 -4653 1513 1326 1 1096 304 176 16 7 chr5 67045980 67046042 -85491217 - B1_Mm SINE Alu 0 147 89 1 1096 909 146 0 0 chr5 67046042 67046172 -85491087 - B3 SINE B2 -86 130 1 1 1096 609 238 47 12 chr5 67046540 67046710 -85490549 - Tigger7 DNA MER2_type -87 2404 2229 1 1096 428 252 94 51 chr5 67046796 67046934 -85490325 - B3A SINE B2 -4 194 51 1 1096 1165 42 21 0 chr5 67046994 67047137 -85490122 - B1_Mus2 SINE Alu 0 147 2 1 1096 232 282 105 12 chr5 67047182 67047268 -85489991 - MIR3 SINE MIR -18 190 97 1 1096 589 275 140 25 chr5 67047362 67047597 -85489662 + B4A SINE B4 30 291 -1 1 1096 288 224 0 0 chr5 67047598 67047696 -85489563 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 1096 1188 61 0 7 chr5 67047879 67048027 -85489232 + B1_Mus1 SINE Alu 2 148 0 1 1096 266 0 29 0 chr5 67048064 67048098 -85489161 + (CAA)n Simple_repeat Simple_repeat 1 35 0 1 1096 1582 204 94 50 chr5 67049197 67049492 -85487767 - MTD LTR MaLR -1 418 99 1 1096 1385 217 135 3 chr5 67049492 67049862 -85487397 - MTD LTR MaLR 0 419 1 1 1096 1582 204 94 50 chr5 67049862 67049948 -85487311 - MTD LTR MaLR -321 98 20 1 1096 1174 136 22 0 chr5 67050177 67050361 -85486898 + B2_Mm1t SINE B2 2 189 -4 1 1096 301 272 91 45 chr5 67050702 67050856 -85486403 - RMER15 LTR ERVL -64 511 351 1 1096 28 0 0 0 chr5 67051410 67051438 -85485821 + AT_rich Low_complexity Low_complexity 1 28 0 1 1096 1456 68 0 25 chr5 67051564 67051761 -85485498 + B2_Mm2 SINE B2 1 192 -3 1 1096 697 87 65 65 chr5 67051805 67051928 -85485331 + B1_Mur4 SINE Alu 28 150 0 1 1096 279 133 0 0 chr5 67051973 67052018 -85485241 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 1 1096 287 248 119 42 chr5 67052021 67052139 -85485120 - Lx7 LINE L1 -318 7378 7252 1 1096 291 306 61 10 chr5 67052377 67052451 -85484808 + RSINE1 SINE B4 62 140 -25 1 1096 1155 117 0 0 chr5 67052451 67052631 -85484628 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1096 291 306 61 10 chr5 67052631 67052655 -85484604 + RSINE1 SINE B4 141 164 -1 1 1096 629 149 9 0 chr5 67052655 67052769 -85484490 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 1096 231 36 0 0 chr5 67053423 67053451 -85483808 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1096 375 23 0 0 chr5 67053552 67053596 -85483663 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1096 264 289 54 15 chr5 67053930 67054060 -85483199 + L1M4 LINE L1 4333 4467 -1679 1 1096 657 258 0 16 chr5 67054067 67054226 -85483033 + B3A SINE B2 6 146 -49 1 1096 322 311 83 77 chr5 67054447 67054679 -85482580 + L1M4c LINE L1 672 908 -5476 1 1096 846 123 100 105 chr5 67054679 67054869 -85482390 - B2_Mm2 SINE B2 -6 189 1 1 1096 322 311 83 77 chr5 67054869 67054936 -85482323 + L1M4c LINE L1 909 973 -5411 1 1096 1103 251 82 20 chr5 67055041 67055394 -85481865 - MTE2b LTR MaLR -3 376 2 1 1096 814 283 166 51 chr5 67055533 67056478 -85480781 + L1M4c LINE L1 2594 3647 -2732 1 1096 1158 65 0 0 chr5 67056550 67056689 -85480570 - B1_Mus2 SINE Alu -8 139 1 1 1096 620 143 48 143 chr5 67056738 67056885 -85480374 - B1_Mur4 SINE Alu -8 142 10 1 1096 1184 48 7 0 chr5 67056979 67057124 -85480135 + B1_Mm SINE Alu 2 147 0 1 1096 1624 119 7 56 chr5 67057479 67057763 -85479496 + Lx4A LINE L1 6782 7051 -7 1 1096 717 203 51 0 chr5 67057982 67058120 -85479139 + B1_Mur1 SINE Alu 5 149 0 1 1096 416 136 11 0 chr5 67058129 67058217 -85479042 + (GGA)n Simple_repeat Simple_repeat 3 91 0 1 1096 265 200 0 74 chr5 67058217 67058271 -85478988 + L1M4c LINE L1 3840 3889 -2490 1 1096 721 229 103 27 chr5 67058281 67058465 -85478794 - B3A SINE B2 0 198 1 1 1096 1053 267 146 27 chr5 67058485 67058666 -85478593 + L1M4c LINE L1 3920 4096 -2283 1 1096 2116 174 73 8 chr5 67058666 67059061 -85478198 - MTC LTR MaLR 0 421 1 1 1096 1053 267 146 27 chr5 67059061 67059284 -85477975 + L1M4c LINE L1 4097 4372 -2007 1 1096 357 111 0 18 chr5 67059288 67059343 -85477916 - B2_Mm2 SINE B2 -139 56 3 1 1096 402 257 129 124 chr5 67059379 67059837 -85477422 + L1M4c LINE L1 4512 4971 -1408 1 1096 377 182 0 0 chr5 67059934 67060009 -85477250 - L1M2 LINE L1 -1202 4941 4870 1 1096 280 336 84 92 chr5 67060011 67060368 -85476891 - ORR1E LTR MaLR 0 359 6 1 1096 548 221 49 2 chr5 67060488 67060714 -85476545 + L1M4c LINE L1 5450 5696 -840 1 1096 298 229 36 45 chr5 67060889 67060999 -85476260 + L1ME1 LINE L1 4557 4665 -1481 1 1096 451 331 0 7 chr5 67060999 67061014 -85476245 + ID_B1 SINE B4 78 222 -2 1 1096 510 254 46 8 chr5 67061014 67061145 -85476114 + B1F1 SINE Alu 12 147 -2 1 1096 263 281 2 0 chr5 67061155 67061221 -85476038 + ID4 SINE ID 3 69 -14 1 1096 507 262 210 37 chr5 67061500 67061881 -85475378 + L1ME1 LINE L1 4853 5299 -847 1 1096 1038 140 0 0 chr5 67061902 67062052 -85475207 + B1_Mur4 SINE Alu 1 150 0 1 1096 386 303 0 0 chr5 67062303 67062402 -85474857 - PB1D10 SINE Alu -18 99 1 1 1096 416 311 48 41 chr5 67062505 67062797 -85474462 + L1ME1 LINE L1 5654 5947 -232 1 1096 673 216 19 125 chr5 67063229 67063414 -85473845 - B3A SINE B2 0 198 29 1 1096 1832 175 117 11 chr5 67063602 67063977 -85473282 - MTC LTR MaLR -6 415 1 1 1096 180 0 0 0 chr5 67064002 67064022 -85473237 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1096 632 216 21 7 chr5 67064158 67064298 -85472961 + B1_Mur1 SINE Alu 1 142 -7 1 1096 440 296 0 27 chr5 67064436 67064547 -85472712 - ID_B1 SINE B4 -11 213 106 1 1096 1009 58 47 0 chr5 67065027 67065198 -85472061 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1 1096 461 151 0 11 chr5 67065198 67065285 -85471974 + CT-rich Low_complexity Low_complexity 2 87 0 1 1096 642 197 0 0 chr5 67065464 67065606 -85471653 + (TA)n Simple_repeat Simple_repeat 1 142 0 1 1096 232 196 0 0 chr5 67066025 67066076 -85471183 - L1MB8 LINE L1 0 6178 6128 1 1096 21 0 0 0 chr5 67071082 67071103 -85466156 + AT_rich Low_complexity Low_complexity 1 21 0 1 1096 426 150 211 61 chr5 67071310 67071424 -85465835 - B1F1 SINE Alu -14 135 5 1 1096 243 225 0 0 chr5 67071645 67071716 -85465543 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 1096 264 175 123 0 chr5 67072258 67072315 -85464944 + PB1 SINE Alu 24 87 -40 1 1096 263 253 11 22 chr5 67072389 67072478 -85464781 + (CA)n Simple_repeat Simple_repeat 1 88 0 1 1096 832 149 7 34 chr5 67073136 67073282 -85463977 + B1_Mur3 SINE Alu 2 143 -6 1 1096 790 220 124 5 chr5 67074165 67074366 -85462893 + URR1A DNA MER1_type 1 225 -1 1 1096 801 217 8 106 chr5 67074623 67074860 -85462399 - B3 SINE B2 0 216 3 1 1096 651 236 7 0 chr5 67075355 67075499 -85461760 - B1_Mur3 SINE Alu 0 149 5 1 1096 631 228 130 12 chr5 67076565 67076734 -85460525 + B3A SINE B2 3 191 -7 1 1096 778 250 12 18 chr5 67076747 67076918 -85460341 + B3 SINE B2 39 208 -8 1 1096 1440 68 15 25 chr5 67076936 67077133 -85460126 - B2_Mm2 SINE B2 0 195 1 1 1096 225 0 0 0 chr5 67077406 67077431 -85459828 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1096 433 342 50 5 chr5 67077431 67077631 -85459628 - MER58A DNA MER1_type -15 209 1 1 1096 462 204 51 0 chr5 67078656 67078754 -85458505 + B1F SINE Alu 2 104 -45 1 1096 212 143 0 23 chr5 67078754 67078797 -85458462 + GA-rich Low_complexity Low_complexity 4 45 0 1 1096 234 258 48 16 chr5 67079140 67079203 -85458056 - RSINE1 SINE B4 -22 143 79 1 1096 423 310 18 96 chr5 67079491 67079635 -85457624 - B4A SINE B4 -85 207 81 1 1096 1212 229 122 36 chr5 67079635 67080021 -85457238 + MTD LTR MaLR 1 419 0 1 1096 423 310 18 96 chr5 67080021 67080094 -85457165 - B4A SINE B4 -212 80 7 1 1096 440 309 87 0 chr5 67080117 67080243 -85457016 - ID_B1 SINE B4 -86 138 2 1 1096 447 268 155 0 chr5 67080291 67080433 -85456826 + RSINE1 SINE B4 2 165 0 1 1096 740 193 133 25 chr5 67080450 67080749 -85456510 - L1MA5 LINE L1 -4 6296 5982 1 1096 189 171 0 0 chr5 67080758 67080793 -85456466 + CT-rich Low_complexity Low_complexity 2 36 0 1 1096 457 259 51 71 chr5 67080887 67081299 -85455960 - RLTR15 LTR ERVK 0 359 33 1 1096 237 324 35 44 chr5 67081305 67081418 -85455841 - L1MA5 LINE L1 -403 5900 5789 1 1096 1155 221 25 42 chr5 67081499 67081782 -85455477 - MTE2b LTR MaLR 0 379 102 1 1096 205 320 0 48 chr5 67082896 67082963 -85454296 + polypyrimidine Low_complexity Low_complexity 40 103 0 2 1096 527 239 9 9 chr5 67082963 67083077 -85454182 - PB1D9 SINE Alu -5 115 2 2 1096 205 320 0 48 chr5 67083077 67083114 -85454145 + polypyrimidine Low_complexity Low_complexity 4 39 0 2 1096 541 227 18 0 chr5 67083170 67083280 -85453979 - B3 SINE B2 -90 126 15 2 1096 1109 60 0 0 chr5 67083335 67083469 -85453790 - B1_Mus1 SINE Alu -13 135 2 2 1096 412 317 7 14 chr5 67083771 67083912 -85453347 - B4A SINE B4 0 292 153 2 1096 28 0 0 0 chr5 67084078 67084106 -85453153 + AT_rich Low_complexity Low_complexity 1 28 0 2 1096 1900 45 82 0 chr5 67084110 67084355 -85452904 - L1_Mus1 LINE L1 -5 6562 6298 2 1096 346 231 13 13 chr5 67084792 67084871 -85452388 + PB1 SINE Alu 38 116 -11 2 1096 327 49 0 0 chr5 67084887 67084928 -85452331 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1096 431 257 153 7 chr5 67084943 67085080 -85452179 - RSINE1 SINE B4 -7 158 2 2 1096 330 158 0 0 chr5 67085112 67085137 -85452122 + A-rich Low_complexity Low_complexity 1 25 0 2 1096 1207 61 0 0 chr5 67085137 67085284 -85451975 + B1_Mus2 SINE Alu 1 147 0 2 1096 330 158 0 0 chr5 67085284 67085334 -85451925 + A-rich Low_complexity Low_complexity 26 75 0 2 1096 1356 69 35 0 chr5 67085484 67085657 -85451602 + B2_Mm1t SINE B2 1 179 -14 2 1096 349 106 26 29 chr5 67085686 67085799 -85451460 + B2_Mm2 SINE B2 47 195 0 2 1096 385 149 26 26 chr5 67085871 67085947 -85451312 - B3A SINE B2 -121 77 2 2 1096 806 179 213 6 chr5 67086515 67086684 -85450575 + B3 SINE B2 1 204 -12 2 1096 2632 164 61 87 chr5 67086706 67087248 -85450011 - Lx6 LINE L1 -22 7438 6911 2 1096 3448 215 16 52 chr5 67087245 67088027 -85449232 + Lx6 LINE L1 6179 6893 -567 2 1096 662 133 40 17 chr5 67088058 67088234 -85449025 + GA-rich Low_complexity Low_complexity 1 180 0 2 1096 973 103 23 11 chr5 67088262 67088438 -85448821 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 2 1096 381 257 66 9 chr5 67089046 67089152 -85448107 + PB1D9 SINE Alu 1 112 -8 2 1096 519 269 28 0 chr5 67089363 67089471 -85447788 - ID_B1 SINE B4 -112 112 2 2 1096 253 225 49 12 chr5 67089481 67089562 -85447697 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 2 1096 291 243 0 22 chr5 67089571 67089710 -85447549 + (TG)n Simple_repeat Simple_repeat 2 137 0 2 1096 421 186 18 42 chr5 67089764 67089932 -85447327 + (TG)n Simple_repeat Simple_repeat 2 165 0 2 1096 1002 280 51 0 chr5 67089937 67090212 -85447047 - B4A SINE B4 0 292 4 2 1096 300 250 12 0 chr5 67090245 67090325 -85446934 - L1MA6 LINE L1 -22 6278 6198 2 1096 423 364 78 17 chr5 67090604 67090836 -85446423 + MLT1E3 LTR MaLR 1 246 -378 2 1096 504 311 55 25 chr5 67090812 67091082 -85446177 + MLT1E3 LTR MaLR 376 651 -3 2 1096 321 338 147 52 chr5 67091636 67091783 -85445476 - HAL1-3A_ME LINE L1 -632 2226 2059 2 1096 180 0 0 0 chr5 67091783 67091803 -85445456 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2 1096 321 338 147 52 chr5 67091803 67091886 -85445373 - HAL1-3A_ME LINE L1 -800 2058 1976 2 1096 234 125 49 24 chr5 67091886 67091968 -85445291 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1096 1215 86 40 11 chr5 67092051 67092201 -85445058 + B2_Mm2 SINE B2 3 159 -36 2 1096 186 43 0 0 chr5 67092201 67092224 -85445035 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 1096 1215 86 40 11 chr5 67092224 67092249 -85445010 + B2_Mm2 SINE B2 160 183 -12 2 1096 210 37 0 0 chr5 67092261 67092288 -85444971 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 1096 965 117 35 0 chr5 67092302 67092447 -85444812 + B1_Mur4 SINE Alu 1 150 0 2 1096 945 113 21 14 chr5 67093072 67093216 -85444043 + B1_Mur1 SINE Alu 2 146 -3 2 1096 257 346 64 46 chr5 67093512 67093550 -85443709 - MER2 DNA MER2_type -231 114 70 2 1096 238 242 153 71 chr5 67093550 67093648 -85443611 - PB1D10 SINE Alu -7 110 5 2 1096 257 346 64 46 chr5 67093648 67093718 -85443541 - MER2 DNA MER2_type -276 69 4 2 1096 188 333 63 0 chr5 67094556 67094619 -85442640 - L2b LINE L2 -5 3370 3304 2 1096 317 188 0 104 chr5 67094685 67094762 -85442497 + MER5A DNA MER1_type 90 158 -31 2 1096 297 0 0 0 chr5 67094791 67094824 -85442435 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1096 225 194 50 20 chr5 67095362 67095462 -85441797 + (TA)n Simple_repeat Simple_repeat 1 103 0 2 1096 941 224 40 0 chr5 67095463 67095664 -85441595 - B3 SINE B2 -6 210 2 2 1096 254 231 138 0 chr5 67096154 67096219 -85441040 + PB1 SINE Alu 51 124 -3 2 1096 473 236 38 0 chr5 67096235 67096341 -85440918 + B1F1 SINE Alu 1 110 -39 2 1096 217 144 44 11 chr5 67096809 67096900 -85440359 + (TA)n Simple_repeat Simple_repeat 1 94 0 2 1096 230 192 40 14 chr5 67096951 67097025 -85440234 + (TA)n Simple_repeat Simple_repeat 1 76 0 2 1096 555 53 0 0 chr5 67097025 67097100 -85440159 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 2 1096 423 192 0 0 chr5 67097233 67097306 -85439953 + LTR16A1 LTR ERVL 54 126 -330 2 1096 346 260 34 111 chr5 67097637 67097754 -85439505 + PB1D9 SINE Alu 2 109 -11 2 1096 972 142 0 0 chr5 67097752 67097893 -85439366 + B1_Mus1 SINE Alu 8 148 0 2 1096 200 120 25 51 chr5 67097895 67097974 -85439285 + A-rich Low_complexity Low_complexity 2 78 0 2 1096 660 212 0 0 chr5 67097992 67098110 -85439149 + PB1D9 SINE Alu 3 120 0 2 1096 585 298 72 7 chr5 67098136 67098288 -85438971 + RSINE1 SINE B4 1 162 -3 2 1096 472 336 0 7 chr5 67098361 67098499 -85438760 + B3A SINE B2 46 182 -16 2 1096 234 0 0 0 chr5 67098599 67098625 -85438634 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1096 821 218 140 0 chr5 67098632 67098825 -85438434 + ID_B1 SINE B4 5 224 0 2 1096 563 271 23 15 chr5 67098853 67098984 -85438275 + RSINE1 SINE B4 3 134 -31 2 1096 501 80 0 0 chr5 67098988 67099063 -85438196 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1096 524 159 141 16 chr5 67099592 67099720 -85437539 + B1F SINE Alu 6 149 0 2 1096 721 190 58 7 chr5 67100198 67100336 -85436923 - RSINE1 SINE B4 -16 149 5 2 1096 287 312 35 26 chr5 67100546 67100661 -85436598 - PB1D10 SINE Alu -1 116 1 2 1096 333 0 0 0 chr5 67100967 67101004 -85436255 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1096 510 17 0 0 chr5 67101004 67101062 -85436197 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1096 533 231 83 0 chr5 67101074 67101195 -85436064 + B1F SINE Alu 3 133 -16 2 1096 1009 236 27 9 chr5 67101449 67101671 -85435588 + URR1A DNA MER1_type 1 226 0 2 1096 188 326 20 71 chr5 67101694 67101793 -85435466 - L2a LINE L2 -264 3162 3069 2 1096 266 280 138 18 chr5 67102027 67102194 -85435065 + L1MD3 LINE L1 7790 7976 -19 2 1096 1173 61 0 26 chr5 67102375 67102527 -85434732 - B1_Mus1 SINE Alu 0 148 1 2 1096 504 266 140 18 chr5 67102767 67103039 -85434220 + L1M5 LINE L1 5022 5326 -820 2 1096 195 69 0 0 chr5 67103297 67103326 -85433933 + (C)n Simple_repeat Simple_repeat 1 29 0 2 1096 1130 52 0 0 chr5 67103326 67103460 -85433799 - B1_Mus1 SINE Alu -13 135 2 2 1096 444 19 0 0 chr5 67103550 67103603 -85433656 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1096 254 244 0 0 chr5 67103631 67103676 -85433583 + B1F2 SINE Alu 15 59 -90 2 1096 300 159 55 6 chr5 67103694 67103859 -85433400 - RMER17C LTR ERVK -135 275 103 2 1096 259 255 56 27 chr5 67103935 67104009 -85433250 + B1F SINE Alu 40 116 -33 2 1096 961 264 99 32 chr5 67104108 67104483 -85432776 - MLT1F LTR MaLR -13 535 136 2 1096 250 245 0 0 chr5 67104582 67104635 -85432624 - MTEb LTR MaLR -7 372 320 2 1096 305 284 146 22 chr5 67104649 67104786 -85432473 - HAL1-3A_ME LINE L1 -421 2437 2284 2 1096 267 189 0 0 chr5 67104787 67104840 -85432419 + CT-rich Low_complexity Low_complexity 2 54 0 2 1096 467 261 13 86 chr5 67104840 67104991 -85432268 - B3 SINE B2 -27 189 50 2 1096 23 0 0 0 chr5 67105016 67105039 -85432220 + AT_rich Low_complexity Low_complexity 1 23 0 2 1096 335 241 50 12 chr5 67105247 67105327 -85431932 - ORR1E LTR MaLR -276 83 1 2 1096 217 296 0 14 chr5 67105677 67105749 -85431510 + MER5B DNA MER1_type 1 71 -107 2 1096 448 225 7 111 chr5 67105755 67105890 -85431369 + B1_Mur1 SINE Alu 29 149 0 2 1096 452 333 26 42 chr5 67105948 67106139 -85431120 + B3A SINE B2 11 198 0 2 1096 567 314 23 75 chr5 67106231 67106537 -85430722 + B4A SINE B4 2 291 -1 2 1096 448 295 97 11 chr5 67107155 67107330 -85429929 + L2a LINE L2 2935 3124 -302 2 1096 1013 291 126 24 chr5 67107380 67107841 -85429418 - MT2A LTR ERVL -25 508 1 2 1096 419 263 84 13 chr5 67107950 67108104 -85429155 - L1MA6 LINE L1 0 6300 6136 2 1096 478 282 17 25 chr5 67108104 67108224 -85429035 + B4A SINE B4 1 119 -173 2 1096 540 279 68 105 chr5 67108234 67108559 -85428700 + ORR1E LTR MaLR 46 370 0 2 0 798 250 86 129 chr5 67108686 67109058 -85428201 - RLTR14 LTR ERV1 0 382 27 2 1097 1396 233 55 50 chr5 67109071 67109487 -85427772 + MTD LTR MaLR 1 418 -1 2 1097 242 250 33 0 chr5 67111652 67111712 -85425547 - B4A SINE B4 -15 277 216 2 1097 32 0 0 0 chr5 67111708 67111740 -85425519 + AT_rich Low_complexity Low_complexity 1 32 0 2 1097 346 238 24 0 chr5 67111740 67111824 -85425435 - B4A SINE B4 -206 86 1 2 1097 1469 273 69 28 chr5 67112555 67113120 -85424139 + L1MB8 LINE L1 5582 6169 -9 2 1097 35 41 0 0 chr5 67113592 67113641 -85423618 + AT_rich Low_complexity Low_complexity 1 49 0 2 1097 600 225 0 0 chr5 67113839 67113959 -85423300 + RSINE1 SINE B4 3 122 -43 2 1097 292 196 0 0 chr5 67114924 67114975 -85422284 - B1F1 SINE Alu -90 59 9 2 1097 1174 77 249 0 chr5 67115814 67115995 -85421264 - URR1A DNA MER1_type 0 226 1 2 1097 573 315 73 23 chr5 67116737 67116997 -85420262 + B4A SINE B4 1 273 -19 2 1097 21 0 0 0 chr5 67117094 67117115 -85420144 + AT_rich Low_complexity Low_complexity 1 21 0 3 1097 269 250 111 41 chr5 67117122 67117293 -85419966 + L1ME2z LINE L1 6262 6444 0 3 1097 534 70 0 0 chr5 67117932 67118003 -85419256 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1097 275 104 21 0 chr5 67118088 67118136 -85419123 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1097 268 311 0 11 chr5 67118416 67118507 -85418752 + MLT1C LTR MaLR 375 464 -3 3 1097 34 89 0 0 chr5 67119083 67119173 -85418086 + AT_rich Low_complexity Low_complexity 1 90 0 3 1097 3283 188 3 9 chr5 67119190 67119763 -85417496 + Lx5 LINE L1 6157 6726 -324 3 1097 1022 247 83 12 chr5 67119954 67120290 -85416969 + RCHARR1 DNA MER1_type 366 725 -249 3 1097 274 238 19 47 chr5 67120293 67120399 -85416860 - ID_B1 SINE B4 0 224 122 3 1097 303 293 12 0 chr5 67120371 67120453 -85416806 + RLTR18B LTR ERVK 426 508 -4 3 1097 472 253 69 37 chr5 67120456 67120654 -85416605 + MER2 DNA MER2_type 93 297 -48 3 1097 414 302 51 15 chr5 67121174 67121369 -85415890 - B4A SINE B4 0 292 91 3 1097 489 238 88 93 chr5 67121371 67121575 -85415684 - B3 SINE B2 -13 203 1 3 1097 395 324 77 43 chr5 67121762 67122113 -85415146 - Lx8 LINE L1 -1 7472 7110 3 1097 252 0 0 0 chr5 67122832 67122860 -85414399 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 3 1097 587 142 0 3 chr5 67122863 67122966 -85414293 - B1_Mur4 SINE Alu -9 139 40 3 1097 555 16 0 0 chr5 67123023 67123087 -85414172 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 1097 687 334 93 44 chr5 67123790 67124241 -85413018 + Arthur1 DNA Tip100 165 637 -3310 3 1097 338 302 16 87 chr5 67124266 67124393 -85412866 + PB1 SINE Alu 5 122 -5 3 1097 231 309 0 0 chr5 67124412 67124480 -85412779 + ID4_ SINE ID 2 69 -14 3 1097 324 70 0 0 chr5 67124488 67124531 -85412728 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 3 1097 739 241 64 0 chr5 67124586 67124789 -85412470 - B3 SINE B2 0 216 1 3 1097 283 331 16 32 chr5 67124843 67124968 -85412291 + Arthur1 DNA Tip100 3275 3397 -550 3 1097 970 126 23 35 chr5 67124978 67125151 -85412108 + B2_Mm2 SINE B2 3 173 -22 3 1097 384 234 97 13 chr5 67125344 67125490 -85411769 + MTEa LTR MaLR 258 414 -5 3 1097 317 305 5 0 chr5 67125690 67125807 -85411452 + B2_Mm2 SINE B2 1 119 -79 3 1097 237 251 10 0 chr5 67125774 67125849 -85411410 - PB1D10 SINE Alu -71 78 1 3 1097 333 0 0 0 chr5 67126096 67126133 -85411126 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 3 1097 229 264 103 71 chr5 67126253 67126408 -85410851 - L1MEd LINE L1 -5934 185 26 3 1097 209 161 0 0 chr5 67126430 67126475 -85410784 + (CAT)n Simple_repeat Simple_repeat 1 45 0 3 1097 922 110 81 0 chr5 67126476 67126612 -85410647 - B1_Mus1 SINE Alu -1 147 1 3 1097 5198 197 75 19 chr5 67126718 67127819 -85409440 - Lx6 LINE L1 -4 7456 6295 3 1097 9192 7 0 0 chr5 67128044 67129258 -85408001 - L1Md_T LINE L1 0 6582 5369 3 1097 921 28 0 0 chr5 67129261 67129370 -85407889 + L1Md_T LINE L1 5258 5366 -517 3 1097 880 298 31 39 chr5 67129408 67129795 -85407464 - MTD LTR MaLR -14 405 22 3 1097 680 260 19 7 chr5 67129946 67130101 -85407158 + ID_B1 SINE B4 60 216 -8 3 1097 636 251 129 16 chr5 67130108 67130294 -85406965 + ID_B1 SINE B4 1 207 -17 3 1097 1187 74 20 36 chr5 67130470 67130622 -85406637 + B2_Mm2 SINE B2 2 149 -46 3 1097 438 20 0 0 chr5 67130622 67130673 -85406586 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1097 1187 74 20 36 chr5 67130673 67130716 -85406543 + B2_Mm2 SINE B2 150 194 -1 3 1097 252 309 75 0 chr5 67130727 67130821 -85406438 + LTR16B2 LTR ERVL 126 226 -236 3 1097 492 282 57 0 chr5 67130854 67130978 -85406281 - ID_B1 SINE B4 -6 218 88 3 1097 373 272 55 18 chr5 67131155 67131320 -85405939 + L1M4 LINE L1 5030 5200 -946 3 1097 634 304 39 0 chr5 67131330 67131511 -85405748 + B3A SINE B2 11 198 0 3 1097 544 216 0 0 chr5 67131518 67131652 -85405607 + L1M4 LINE L1 5191 5324 -822 3 1097 352 317 20 0 chr5 67131661 67131762 -85405497 + B1F1 SINE Alu 1 103 -46 3 1097 501 0 0 42 chr5 67131778 67131850 -85405409 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 3 1097 372 232 21 10 chr5 67131852 67131948 -85405311 + L1M4 LINE L1 5337 5433 -745 3 1097 621 236 148 25 chr5 67131958 67132154 -85405105 + ID_B1 SINE B4 3 222 -2 3 1097 255 281 31 109 chr5 67132179 67132307 -85404952 + MT2B LTR ERVL 140 257 -344 3 1097 633 214 0 22 chr5 67132214 67132348 -85404911 + B1_Mur1 SINE Alu 14 144 -5 3 1097 625 298 125 0 chr5 67132357 67132605 -85404654 + L1M4 LINE L1 5500 5778 -406 3 1097 289 292 90 0 chr5 67132672 67132761 -85404498 + PB1 SINE Alu 20 116 -11 3 1097 25 0 0 0 chr5 67132884 67132909 -85404350 + AT_rich Low_complexity Low_complexity 1 25 0 3 1097 3504 135 36 7 chr5 67132933 67133174 -85404085 + RLTR12A LTR ERVK 1 252 -316 3 1097 1044 101 0 0 chr5 67133174 67133352 -85403907 + (GA)n Simple_repeat Simple_repeat 1 178 0 3 1097 3504 135 36 7 chr5 67133352 67133662 -85403597 + RLTR12A LTR ERVK 253 567 -1 3 1097 321 91 0 0 chr5 67133662 67133706 -85403553 - tRNA-Ala-GCY_ tRNA tRNA -23 52 9 3 1097 282 289 0 159 chr5 67133697 67133886 -85403373 - ZP3AR Satellite Satellite -12 200 42 3 1097 349 246 136 0 chr5 67133884 67134002 -85403257 - B1F SINE Alu -1 148 15 3 1097 3095 127 33 52 chr5 67134840 67135421 -85401838 + RMER15 LTR ERVL 1 570 -5 3 1097 617 240 128 6 chr5 67135886 67136066 -85401193 - ID_B1 SINE B4 -15 209 8 3 1097 1492 147 100 12 chr5 67136098 67136438 -85400821 - MTC LTR MaLR -8 413 1 3 1097 243 0 0 0 chr5 67136451 67136478 -85400781 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1097 279 0 0 0 chr5 67139265 67139296 -85397963 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1097 236 259 66 27 chr5 67140157 67140284 -85396975 + MIR SINE MIR 6 128 -134 3 1097 206 269 31 41 chr5 67140347 67140444 -85396815 + MIR SINE MIR 130 225 -37 3 1097 408 298 117 18 chr5 67140510 67140681 -85396578 + B4A SINE B4 105 292 0 3 1097 27 29 0 0 chr5 67140901 67140935 -85396324 + AT_rich Low_complexity Low_complexity 1 34 0 3 1097 215 212 299 15 chr5 67141177 67141244 -85396015 - PB1D10 SINE Alu -30 87 2 3 1097 1201 68 0 0 chr5 67141480 67141628 -85395631 - B1_Mus1 SINE Alu 0 148 1 3 1097 213 121 0 0 chr5 67143120 67143153 -85394106 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 3 1097 426 284 0 9 chr5 67143155 67143265 -85393994 - B1_Mur1 SINE Alu -1 148 40 3 1097 287 298 45 9 chr5 67143278 67143402 -85393857 - MIR SINE MIR -85 191 59 3 1097 200 231 55 0 chr5 67143422 67143513 -85393746 + (TA)n Simple_repeat Simple_repeat 1 96 0 3 1097 220 158 17 17 chr5 67143524 67143582 -85393677 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 3 1097 212 125 0 48 chr5 67144519 67144561 -85392698 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1097 240 281 53 63 chr5 67144571 67144666 -85392593 - B1F SINE Alu -55 94 1 3 1097 1134 51 0 0 chr5 67145922 67146059 -85391200 + B1_Mus2 SINE Alu 2 138 -9 3 1097 180 359 32 11 chr5 67146102 67146195 -85391064 - L2b LINE L2 -22 3353 3259 3 1097 549 30 0 0 chr5 67146554 67146621 -85390638 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1097 245 270 0 31 chr5 67147259 67147324 -85389935 + CT-rich Low_complexity Low_complexity 6 68 0 3 1097 369 0 0 0 chr5 67148187 67148228 -85389031 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1097 559 252 0 16 chr5 67148661 67148786 -85388473 - MIR SINE MIR -113 149 27 3 1097 201 39 0 0 chr5 67148981 67149007 -85388252 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 3 1097 211 259 18 18 chr5 67149824 67149879 -85387380 - ID4 SINE ID -26 57 3 3 1097 235 262 15 15 chr5 67149895 67149961 -85387298 - ORR1E LTR MaLR -1 378 313 3 1097 488 268 24 0 chr5 67149962 67150085 -85387174 - ORR1E LTR MaLR -230 129 4 3 1097 849 279 99 8 chr5 67151178 67151431 -85385828 + B4 SINE B4 10 285 -7 3 1097 308 111 19 0 chr5 67151461 67151515 -85385744 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1097 363 287 9 53 chr5 67151668 67151782 -85385477 - PB1D10 SINE Alu -7 110 2 3 1097 322 34 0 78 chr5 67152518 67152582 -85384677 - L1Md_F3 LINE L1 0 6584 6526 3 1097 250 288 25 0 chr5 67153452 67153532 -85383727 - MLT1H2 LTR MaLR -337 152 71 3 1097 2777 208 16 19 chr5 67153657 67154227 -85383032 - Lx5 LINE L1 0 7050 6483 3 1097 411 136 0 0 chr5 67154258 67154317 -85382942 - Lx5 LINE L1 -206 6844 6786 3 1097 372 167 0 0 chr5 67154701 67154773 -85382486 + (ATG)n Simple_repeat Simple_repeat 3 74 0 3 1097 241 336 52 17 chr5 67154792 67154907 -85382352 + MIRb SINE MIR 36 154 -114 3 1097 334 195 43 5 chr5 67154929 67155015 -85382244 - ID4 SINE ID -56 96 10 3 1097 225 170 0 21 chr5 67155900 67155948 -85381311 - MLT1F1 LTR MaLR -12 612 566 3 1097 855 344 68 4 chr5 67156375 67156828 -85380431 - MLT1F1 LTR MaLR -86 483 2 3 1097 214 222 0 0 chr5 67157262 67157307 -85379952 + MER5B DNA MER1_type 6 50 -128 3 1097 839 88 16 0 chr5 67157783 67157908 -85379351 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 3 1097 691 71 76 42 chr5 67157917 67158035 -85379224 - B2_Mm2 SINE B2 -72 123 2 3 1097 959 101 47 0 chr5 67158072 67158221 -85379038 + B2_Mm2 SINE B2 40 195 0 3 1097 530 303 13 0 chr5 67158717 67158872 -85378387 - RSINE1 SINE B4 -5 160 4 3 1097 246 222 46 31 chr5 67159118 67159183 -85378076 + B1_Mur2 SINE Alu 32 97 -52 3 1097 698 199 93 22 chr5 67159582 67159721 -85377538 - B1_Mur3 SINE Alu 0 149 1 3 1097 852 127 0 0 chr5 67159915 67160057 -85377202 + (TCCCC)n Simple_repeat Simple_repeat 4 145 0 3 1097 432 257 29 0 chr5 67160064 67160169 -85377090 - PB1D10 SINE Alu 0 117 10 3 1097 448 158 0 21 chr5 67160300 67160397 -85376862 + CT-rich Low_complexity Low_complexity 1 95 0 3 1097 663 229 0 0 chr5 67161130 67161300 -85375959 + (TG)n Simple_repeat Simple_repeat 2 171 0 4 1097 302 280 84 0 chr5 67161457 67161564 -85375695 - L1MA4 LINE L1 -368 5932 5817 4 1097 496 212 79 21 chr5 67161673 67161813 -85375446 - L1MD3 LINE L1 -417 7578 7431 4 1097 405 145 0 0 chr5 67161837 67161913 -85375346 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1097 653 251 14 71 chr5 67161941 67162151 -85375108 - B4A SINE B4 -13 279 82 4 1097 216 0 0 0 chr5 67162151 67162175 -85375084 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1097 759 186 2 8 chr5 67162262 67162788 -85374471 + (TG)n Simple_repeat Simple_repeat 1 522 0 4 1097 278 313 0 0 chr5 67164797 67164864 -85372395 - ID4_ SINE ID -14 69 3 4 1097 332 273 28 33 chr5 67164881 67165011 -85372248 - B1F SINE Alu -8 141 10 4 1097 268 308 46 40 chr5 67165011 67165027 -85372232 - ID_B1 SINE B4 -2 188 70 4 1097 621 100 0 0 chr5 67166518 67166608 -85370651 + (TCCC)n Simple_repeat Simple_repeat 3 92 0 4 1097 258 105 0 0 chr5 67167096 67167134 -85370125 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1097 287 115 39 0 chr5 67167835 67167887 -85369372 + CT-rich Low_complexity Low_complexity 5 58 0 4 1097 861 232 87 29 chr5 67167905 67168180 -85369079 - B4A SINE B4 0 292 2 4 1097 23 0 0 0 chr5 67168746 67168769 -85368490 + AT_rich Low_complexity Low_complexity 1 23 0 4 1097 1173 83 0 0 chr5 67168891 67169036 -85368223 + B1_Mus1 SINE Alu 2 146 -2 4 1097 824 216 40 10 chr5 67169050 67169251 -85368008 - B3 SINE B2 -4 212 6 4 1097 249 247 39 58 chr5 67169248 67169351 -85367908 - MLT1A1 LTR MaLR -307 101 1 4 1097 583 195 15 15 chr5 67170896 67171026 -85366233 - B1_Mus2 SINE Alu 0 147 18 4 1097 469 264 7 40 chr5 67170898 67171048 -85366211 - ID_B1 SINE B4 0 224 80 4 1097 792 244 88 29 chr5 67171198 67171472 -85365787 - B4 SINE B4 0 292 3 4 1097 843 192 262 7 chr5 67172000 67172294 -85364965 - ORR1D1 LTR MaLR 0 374 6 4 1097 877 265 75 42 chr5 67173101 67173432 -85363827 + MTEb LTR MaLR 1 342 -37 4 1097 666 289 5 57 chr5 67173549 67173758 -85363501 + B3A SINE B2 1 198 0 4 1097 1374 99 16 0 chr5 67174189 67174381 -85362878 + B2_Mm2 SINE B2 1 195 0 4 1097 546 174 8 18 chr5 67175054 67175179 -85362080 + ORR1A4 LTR MaLR 232 356 -14 4 1097 264 339 37 0 chr5 67175376 67175485 -85361774 - MIR SINE MIR -2 260 148 4 1097 427 155 0 87 chr5 67175740 67175832 -85361427 + B1_Mus2 SINE Alu 53 136 -11 4 1097 263 49 0 24 chr5 67175839 67175881 -85361378 + (CACAA)n Simple_repeat Simple_repeat 2 42 0 4 1097 405 0 0 0 chr5 67175887 67175932 -85361327 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1097 411 141 21 11 chr5 67176665 67176758 -85360501 + (TG)n Simple_repeat Simple_repeat 1 94 0 4 1097 258 304 51 0 chr5 67177389 67177468 -85359791 + ID SINE ID 2 84 -140 4 1097 1267 238 20 103 chr5 67178696 67179094 -85358165 - MTE2a LTR MaLR -10 369 5 4 1097 518 229 24 20 chr5 67180889 67181145 -85356114 + CT-rich Low_complexity Low_complexity 1 256 0 4 1097 369 277 129 52 chr5 67181302 67181570 -85355689 + B4 SINE B4 1 274 -18 4 1097 463 282 122 0 chr5 67181631 67181762 -85355497 + B3A SINE B2 10 156 -42 4 1097 717 45 0 0 chr5 67183056 67183145 -85354114 + (TTCC)n Simple_repeat Simple_repeat 3 91 0 4 1097 632 210 0 32 chr5 67183151 67183274 -85353985 - B1_Mur4 SINE Alu -31 119 1 4 1097 183 80 0 0 chr5 67184207 67184232 -85353027 + (TGGGGG)n Simple_repeat Simple_repeat 1 25 0 4 1097 704 245 23 120 chr5 67185614 67186070 -85351189 + MTD LTR MaLR 3 406 -13 4 1097 338 342 13 0 chr5 67186146 67186304 -85350955 + MIR SINE MIR 101 260 -2 4 1097 2620 127 10 29 chr5 67186476 67186889 -85350370 - MTB_Mm LTR MaLR 0 407 3 4 1097 360 0 0 0 chr5 67187132 67187172 -85350087 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 4 1097 271 277 57 42 chr5 67187968 67188114 -85349145 + B1F1 SINE Alu 3 143 -6 4 1097 299 291 108 36 chr5 67188291 67188430 -85348829 - MER46C DNA MER2_type -95 243 95 4 1097 542 194 134 37 chr5 67188452 67188586 -85348673 - B1_Mur1 SINE Alu -2 147 1 4 1097 301 241 69 46 chr5 67189270 67189357 -85347902 - B1F1 SINE Alu -60 89 1 4 1097 437 256 96 84 chr5 67190436 67190602 -85346657 - B4A SINE B4 -123 169 2 4 1097 231 36 0 0 chr5 67190629 67190657 -85346602 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1097 195 42 0 0 chr5 67191079 67191103 -85346156 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1097 220 313 58 58 chr5 67192106 67192245 -85345014 + MIR SINE MIR 114 252 -10 4 1097 369 329 71 14 chr5 67192312 67192522 -85344737 + B4A SINE B4 2 223 -69 4 1097 468 0 0 0 chr5 67192863 67192915 -85344344 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1097 829 281 44 55 chr5 67192956 67193231 -85344028 - B4A SINE B4 0 292 21 4 1097 186 171 0 0 chr5 67194180 67194221 -85343038 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1097 864 294 14 20 chr5 67194249 67194541 -85342718 - B4 SINE B4 -2 290 1 4 1097 675 236 214 0 chr5 67194551 67194733 -85342526 - ID_B1 SINE B4 -2 222 2 4 1097 461 347 97 21 chr5 67194750 67195130 -85342129 - MLT1I LTR MaLR -2 409 1 4 1097 33 0 0 0 chr5 67195335 67195368 -85341891 + AT_rich Low_complexity Low_complexity 1 33 0 4 1097 205 256 0 0 chr5 67195487 67195530 -85341729 + (CGTG)n Simple_repeat Simple_repeat 4 46 0 4 1097 236 385 10 0 chr5 67195736 67195840 -85341419 + MIRb SINE MIR 49 153 -115 4 1097 849 194 0 0 chr5 67197409 67197589 -85339670 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1097 537 288 141 25 chr5 67197635 67197877 -85339382 - B4A SINE B4 -14 278 9 4 1097 258 276 293 0 chr5 67198529 67198703 -85338556 + MLT1D LTR MaLR 139 363 -142 4 1097 807 108 0 0 chr5 67198943 67199063 -85338196 + (TTTC)n Simple_repeat Simple_repeat 4 123 0 4 1097 200 200 0 39 chr5 67199442 67199494 -85337765 + T-rich Low_complexity Low_complexity 1 50 0 4 1097 288 317 54 59 chr5 67199497 67199635 -85337624 - Lx8 LINE L1 -5 7468 7330 4 1097 387 0 0 0 chr5 67199635 67199678 -85337581 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1097 288 317 54 59 chr5 67199678 67199760 -85337499 - Lx8 LINE L1 -144 7329 7249 4 1097 643 195 16 0 chr5 67199789 67199912 -85337347 - B3A SINE B2 -73 125 1 4 1097 354 266 13 0 chr5 67200115 67200194 -85337065 - ID4_ SINE ID -2 81 2 4 1097 468 260 62 0 chr5 67200855 67201001 -85336258 + B4 SINE B4 23 177 -115 4 1097 423 0 0 0 chr5 67201149 67201196 -85336063 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1097 336 24 0 0 chr5 67201196 67201236 -85336023 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1097 441 231 0 0 chr5 67201257 67201430 -85335829 + (CA)n Simple_repeat Simple_repeat 2 174 0 4 1097 315 0 0 0 chr5 67202316 67202351 -85334908 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1097 313 236 85 0 chr5 67202397 67202503 -85334756 - MIRb SINE MIR -137 131 17 4 1097 561 42 0 0 chr5 67203159 67203231 -85334028 + (TA)n Simple_repeat Simple_repeat 2 73 0 4 1097 473 298 189 46 chr5 67203286 67203306 -85333953 + Lx9 LINE L1 7057 7075 -569 4 1097 2993 45 85 8 chr5 67203306 67203684 -85333575 - MTB_Mm LTR MaLR 0 407 1 4 1097 473 298 189 46 chr5 67203684 67203871 -85333388 + Lx9 LINE L1 7076 7256 -388 4 1097 1518 60 5 0 chr5 67203871 67204055 -85333204 + B2_Mm1a SINE B2 2 186 -7 4 1097 473 298 189 46 chr5 67204055 67204328 -85332931 + Lx9 LINE L1 7257 7607 -37 4 1097 318 145 203 0 chr5 67204410 67204479 -85332780 + ID_B1 SINE B4 84 166 -58 4 1097 451 332 48 60 chr5 67204610 67204946 -85332313 - MLT1A LTR MaLR -42 332 1 4 1097 517 131 0 0 chr5 67205602 67205694 -85331565 - B1_Mus1 SINE Alu -55 93 1 4 1097 1002 84 0 0 chr5 67205707 67205849 -85331410 - B1_Mus1 SINE Alu 0 148 7 4 1097 267 259 0 0 chr5 67205958 67206016 -85331243 + B1F SINE Alu 29 86 -63 4 1097 432 0 0 0 chr5 67206218 67206266 -85330993 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1097 525 276 29 15 chr5 67209211 67209347 -85327912 - B4 SINE B4 -153 139 2 4 1097 507 223 36 0 chr5 67210668 67210780 -85326479 + PB1D10 SINE Alu 2 117 0 4 1097 1324 112 16 0 chr5 67210816 67211004 -85326255 + B2_Mm2 SINE B2 1 191 -4 4 1097 280 281 34 0 chr5 67211015 67211104 -85326155 + B4A SINE B4 1 92 -200 4 1097 369 294 0 0 chr5 67211130 67211222 -85326037 + B4A SINE B4 201 292 0 4 1097 985 130 0 0 chr5 67211274 67211412 -85325847 - B1_Mur4 SINE Alu -12 138 1 4 1097 231 114 0 0 chr5 67211452 67211496 -85325763 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1097 432 0 0 0 chr5 67211501 67211549 -85325710 + (TC)n Simple_repeat Simple_repeat 2 49 0 4 1097 21 0 0 0 chr5 67212963 67212984 -85324275 + AT_rich Low_complexity Low_complexity 1 21 0 4 1097 2854 107 32 0 chr5 67212993 67213404 -85323855 - Lx3B LINE L1 0 6973 6550 4 1097 542 349 73 49 chr5 67214551 67214895 -85322364 - ORR1E LTR MaLR -7 352 1 4 1097 722 175 101 39 chr5 67214905 67215083 -85322176 + B2_Mm2 SINE B2 1 189 -6 4 1097 505 279 0 83 chr5 67215413 67215581 -85321678 - RSINE1 SINE B4 -1 164 11 4 1097 375 232 10 50 chr5 67216468 67216568 -85320691 - B4A SINE B4 0 292 197 4 1097 1219 211 7 51 chr5 67216578 67216873 -85320386 - B4A SINE B4 0 292 11 4 1097 958 176 101 39 chr5 67218835 67219143 -85318116 - RMER17C LTR ERVK 0 410 84 5 1097 655 243 24 60 chr5 67219140 67219230 -85318029 - RMER17C LTR ERVK -166 244 191 5 1097 1389 61 0 0 chr5 67219230 67219410 -85317849 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1097 655 224 21 42 chr5 67219410 67219591 -85317668 - RMER17C LTR ERVK -220 190 12 5 1097 1016 241 78 4 chr5 67219621 67219892 -85317367 - B4A SINE B4 0 292 2 5 1097 195 39 0 0 chr5 67220058 67220074 -85317185 + (TTC)n Simple_repeat Simple_repeat 1 16 0 5 1097 1392 56 0 0 chr5 67220074 67220252 -85317007 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 5 1097 195 39 0 0 chr5 67220252 67220261 -85316998 + (TTC)n Simple_repeat Simple_repeat 1 9 0 5 1097 271 228 84 0 chr5 67221015 67221093 -85316166 - MLT1G3 LTR MaLR -251 328 244 5 1097 24 77 0 0 chr5 67222494 67222546 -85314713 + AT_rich Low_complexity Low_complexity 1 52 0 5 1097 430 289 7 29 chr5 67222553 67222692 -85314567 - RSINE1 SINE B4 0 165 30 5 1097 1011 241 71 44 chr5 67222699 67223037 -85314222 + MTD LTR MaLR 49 395 -24 5 1097 234 239 29 15 chr5 67224388 67224456 -85312803 - MIR SINE MIR -101 161 93 5 1097 278 67 0 22 chr5 67224657 67224703 -85312556 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 5 1097 857 261 41 86 chr5 67224757 67224860 -85312399 + MER2 DNA MER2_type 17 120 -225 5 1097 1299 111 16 5 chr5 67224860 67225051 -85312208 - B2_Mm2 SINE B2 -1 194 2 5 1097 857 261 41 86 chr5 67225051 67225286 -85311973 + MER2 DNA MER2_type 121 340 -5 5 1097 297 0 0 0 chr5 67225628 67225661 -85311598 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1097 303 28 0 0 chr5 67225661 67225696 -85311563 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1097 477 0 0 0 chr5 67225696 67225748 -85311511 + (GA)n Simple_repeat Simple_repeat 1 53 0 5 1097 557 191 27 0 chr5 67225750 67225860 -85311399 - PB1D9 SINE Alu -3 117 5 5 1097 842 29 0 9 chr5 67226478 67226584 -85310675 + (GGA)n Simple_repeat Simple_repeat 2 106 0 5 1097 492 156 0 0 chr5 67227309 67227437 -85309822 + CT-rich Low_complexity Low_complexity 1 128 0 5 1097 273 119 0 0 chr5 67227437 67227479 -85309780 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1097 573 277 104 42 chr5 67227487 67227747 -85309512 - B4A SINE B4 -14 278 3 5 1097 397 306 68 79 chr5 67228247 67228628 -85308631 - MTEa LTR MaLR 0 379 6 5 1097 500 329 12 6 chr5 67228707 67228872 -85308387 + MER58A DNA MER1_type 30 195 -29 5 1097 307 267 0 0 chr5 67228955 67229030 -85308229 + Charlie12 DNA MER1_type 2799 2873 0 5 1097 186 321 12 58 chr5 67229109 67229195 -85308064 + MER5B DNA MER1_type 21 102 -76 5 1097 338 268 156 32 chr5 67229546 67229700 -85307559 - B4A SINE B4 -17 275 103 5 1097 1340 271 105 4 chr5 67229885 67230352 -85306907 - L1MB3 LINE L1 -1 6182 5669 5 1097 255 284 40 0 chr5 67230784 67230858 -85306401 + ID SINE ID 2 78 -146 5 1097 282 56 0 0 chr5 67230858 67230894 -85306365 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1097 1657 218 162 19 chr5 67231409 67231891 -85305368 - RMER15 LTR ERVL -3 572 22 5 1097 284 312 425 0 chr5 67232065 67232213 -85305046 - ID_B1 SINE B4 -12 212 3 5 1097 919 178 68 15 chr5 67232239 67232444 -85304815 - B3 SINE B2 0 216 1 5 1097 387 0 0 0 chr5 67232522 67232565 -85304694 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1097 554 230 50 7 chr5 67232579 67232719 -85304540 - RSINE1 SINE B4 -17 148 3 5 1097 210 71 0 0 chr5 67232921 67232949 -85304310 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 5 1097 1094 88 0 6 chr5 67232949 67233110 -85304149 - B2_Mm2 SINE B2 -34 161 2 5 1097 348 256 13 0 chr5 67233802 67233880 -85303379 - ID4_ SINE ID -2 81 3 5 1097 883 277 29 4 chr5 67233936 67234211 -85303048 - B4A SINE B4 -9 283 2 5 1097 523 240 23 23 chr5 67234957 67235085 -85302174 - RSINE1 SINE B4 -35 130 3 5 1097 454 196 10 10 chr5 67235158 67235261 -85301998 - MLT1A1 LTR MaLR 0 408 306 5 1097 486 0 0 0 chr5 67235346 67235400 -85301859 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1097 304 295 44 18 chr5 67235444 67235558 -85301701 - MLT1A1 LTR MaLR -291 117 1 5 1097 444 315 40 20 chr5 67236714 67236866 -85300393 + MER63A DNA AcHobo 3 157 -53 5 1097 372 178 0 0 chr5 67237033 67237106 -85300153 + CT-rich Low_complexity Low_complexity 1 73 0 5 1097 812 168 0 0 chr5 67237490 67237633 -85299626 - URR1B DNA MER1_type 0 225 83 5 1097 925 127 15 0 chr5 67238083 67238217 -85299042 + B1_Mus2 SINE Alu 2 137 -10 5 1097 323 281 96 42 chr5 67238631 67238798 -85298461 + MIR SINE MIR 2 177 -85 5 1097 288 0 0 0 chr5 67239244 67239276 -85297983 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 5 1097 266 0 29 0 chr5 67239355 67239389 -85297870 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 5 1097 501 17 0 0 chr5 67239875 67239933 -85297326 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1098 672 280 51 14 chr5 67239963 67240180 -85297079 - B4A SINE B4 -65 227 3 5 1098 344 246 38 53 chr5 67240816 67240949 -85296310 + GA-rich Low_complexity Low_complexity 1 131 0 5 1098 342 0 0 0 chr5 67243008 67243046 -85294213 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1098 222 333 59 13 chr5 67243553 67243705 -85293554 - MIRb SINE MIR -15 253 95 5 1098 402 291 78 16 chr5 67244505 67244634 -85292625 + B1F1 SINE Alu 5 141 -8 5 1098 1067 62 7 0 chr5 67244634 67244778 -85292481 + (CAGT)n Simple_repeat Simple_repeat 4 148 0 5 1098 1074 203 0 62 chr5 67244778 67245004 -85292255 + B3 SINE B2 3 214 -2 5 1098 228 35 0 0 chr5 67245889 67245918 -85291341 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1098 561 298 46 36 chr5 67246100 67246295 -85290964 - RMER30 DNA MER1_type -1 201 5 5 1098 432 37 0 0 chr5 67246568 67246622 -85290637 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1098 608 207 74 8 chr5 67246631 67246753 -85290506 - B1_Mur1 SINE Alu -13 136 7 5 1098 488 250 34 63 chr5 67247195 67247370 -85289889 - L1MEc LINE L1 -2727 3592 3423 5 1098 543 331 119 41 chr5 67247478 67247989 -85289270 - L1MEc LINE L1 -3261 3058 2508 5 1098 277 313 50 11 chr5 67248051 67248232 -85289027 - L1MEc LINE L1 -3992 2408 2221 5 1098 300 306 142 0 chr5 67248232 67248366 -85288893 - HAL1-3A_ME LINE L1 -422 2436 2284 5 1098 202 175 63 0 chr5 67248374 67248437 -85288822 + C-rich Low_complexity Low_complexity 5 71 0 5 1098 322 239 81 18 chr5 67249304 67249415 -85287844 - B1_Mur4 SINE Alu -1 149 32 5 1098 261 0 0 0 chr5 67249788 67249817 -85287442 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1098 1781 125 10 3 chr5 67249906 67250204 -85287055 - RLTR11A2 LTR ERVK 0 527 228 5 1098 417 183 9 46 chr5 67250224 67250333 -85286926 - RLTR11A2 LTR ERVK -267 260 156 5 1098 281 236 36 15 chr5 67250333 67250429 -85286830 - L1ME3 LINE L1 -192 5972 5877 5 1098 22 0 0 0 chr5 67251024 67251046 -85286213 + AT_rich Low_complexity Low_complexity 1 22 0 5 1098 952 197 25 5 chr5 67251046 67251238 -85286021 + MTD LTR MaLR 18 213 -206 5 1098 1058 112 0 0 chr5 67251238 67251390 -85285869 + B2_Mm2 SINE B2 1 152 -43 5 1098 917 237 23 9 chr5 67251371 67251592 -85285667 + MTD LTR MaLR 196 419 0 5 1098 216 0 0 0 chr5 67253168 67253192 -85284067 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1098 309 26 0 0 chr5 67253206 67253244 -85284015 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1098 882 180 0 0 chr5 67253828 67254006 -85283253 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 1098 814 274 38 5 chr5 67254333 67254542 -85282717 - B3 SINE B2 0 216 1 5 1098 239 298 12 12 chr5 67254557 67254642 -85282617 - MER21B LTR ERV1 -169 694 610 5 1098 2023 63 11 4 chr5 67255304 67255576 -85281683 + L1_Mus3 LINE L1 6365 6638 0 5 1098 243 61 0 0 chr5 67255580 67255613 -85281646 + (TTTTA)n Simple_repeat Simple_repeat 5 37 0 5 1098 762 187 0 7 chr5 67255651 67255791 -85281468 - B3 SINE B2 -76 140 2 5 1098 182 276 17 0 chr5 67256610 67256668 -85280591 - L2 LINE L2 -1243 2176 2118 5 1098 263 250 44 0 chr5 67257014 67257082 -85280177 - BLACKJACK DNA AcHobo -2873 71 1 5 1098 301 277 97 40 chr5 67259384 67259508 -85277751 - ORR1E LTR MaLR -210 149 19 5 1098 182 105 0 26 chr5 67259770 67259809 -85277450 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1098 263 226 0 0 chr5 67259882 67259935 -85277324 - PB1D10 SINE Alu -2 115 63 5 1098 470 214 0 1 chr5 67259950 67260065 -85277194 + L1MB8 LINE L1 5228 5341 -805 5 1098 3819 189 28 52 chr5 67260067 67260972 -85276287 + RMER13B LTR ERVK 1 883 -25 5 1098 230 242 32 0 chr5 67260982 67261044 -85276215 + L1MB8 LINE L1 5339 5402 -744 5 1098 712 255 155 43 chr5 67261068 67261461 -85275798 + L1MB8 LINE L1 5646 6082 -96 5 1098 254 38 37 37 chr5 67263629 67263683 -85273576 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1098 1601 196 90 41 chr5 67264338 67264726 -85272533 - MTD LTR MaLR 0 419 13 5 1098 1085 206 295 42 chr5 67264903 67265289 -85271970 + Lx8 LINE L1 6919 7402 -71 5 1098 198 0 0 0 chr5 67267041 67267063 -85270196 + (TTTTTG)n Simple_repeat Simple_repeat 1 22 0 5 1098 228 35 0 0 chr5 67267081 67267110 -85270149 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1098 1997 192 17 5 chr5 67267599 67268003 -85269256 - MTC LTR MaLR -2 419 11 5 1098 22 0 0 0 chr5 67268672 67268694 -85268565 + AT_rich Low_complexity Low_complexity 1 22 0 5 1098 624 227 0 0 chr5 67269756 67269932 -85267327 + (TA)n Simple_repeat Simple_repeat 2 177 0 5 1098 303 250 0 0 chr5 67269934 67270002 -85267257 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 5 1098 279 0 0 0 chr5 67270002 67270033 -85267226 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1098 218 125 50 0 chr5 67270034 67270074 -85267185 - PB1D9 SINE Alu -77 43 2 5 1098 731 175 70 0 chr5 67270950 67271107 -85266152 - B2_Mm2 SINE B2 -15 201 1 5 1098 388 248 152 8 chr5 67271656 67271774 -85265485 + MER2 DNA MER2_type 1 135 -210 5 1098 462 114 0 0 chr5 67273963 67274033 -85263226 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1098 423 309 288 13 chr5 67274943 67275172 -85262087 - B4A SINE B4 0 292 1 6 1098 21 71 0 0 chr5 67275363 67275405 -85261854 + AT_rich Low_complexity Low_complexity 1 42 0 6 1098 225 0 0 0 chr5 67276186 67276211 -85261048 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 6 1098 427 97 0 0 chr5 67276247 67276309 -85260950 + B1_Mur4 SINE Alu 12 73 -77 6 1098 506 234 31 55 chr5 67276995 67277158 -85260101 - RLTR14 LTR ERV1 0 382 224 6 1098 768 156 0 0 chr5 67277566 67277746 -85259513 + GA-rich Low_complexity Low_complexity 1 180 0 6 1098 213 182 0 0 chr5 67277759 67277814 -85259445 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1098 870 249 19 5 chr5 67279942 67280148 -85257111 + B3 SINE B2 1 209 -7 6 1098 333 0 0 0 chr5 67280290 67280327 -85256932 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1098 186 43 0 0 chr5 67281021 67281044 -85256215 + (TTTC)n Simple_repeat Simple_repeat 1 23 0 6 1098 484 279 130 0 chr5 67282525 67282679 -85254580 + Tigger5 DNA MER2_type 37 210 -2196 6 1098 467 219 98 42 chr5 67282838 67282981 -85254278 - MLT1F2 LTR MaLR 0 548 398 6 1098 236 225 28 0 chr5 67282984 67283055 -85254204 + GA-rich Low_complexity Low_complexity 1 73 0 6 1098 525 277 68 59 chr5 67283061 67283280 -85253979 - MLT1F2 LTR MaLR -339 221 1 6 1098 476 293 131 0 chr5 67283317 67283508 -85253751 + Tigger5 DNA MER2_type 22 237 -2169 6 1098 269 237 0 0 chr5 67283555 67283614 -85253645 + Tigger5 DNA MER2_type 2347 2405 -1 6 1098 1358 239 49 49 chr5 67283684 67284137 -85253122 + RLTR11A2 LTR ERVK 73 525 -2 6 1098 378 241 116 20 chr5 67285102 67285214 -85252045 - MLT1A1 LTR MaLR -285 123 10 6 1098 655 246 180 30 chr5 67286226 67286557 -85250702 - MLT1B LTR MaLR 0 467 1 6 1098 1354 143 13 39 chr5 67287390 67287622 -85249637 - URR1A DNA MER1_type 0 226 1 6 1098 445 276 26 87 chr5 67287674 67287789 -85249470 + PB1 SINE Alu 4 111 -38 6 1098 988 141 6 6 chr5 67287804 67287982 -85249277 + GA-rich Low_complexity Low_complexity 2 179 0 6 1098 1385 45 6 0 chr5 67287996 67288173 -85249086 + (GAA)n Simple_repeat Simple_repeat 3 180 0 6 1098 405 260 180 42 chr5 67288191 67288408 -85248851 + L1MC3 LINE L1 7303 7549 -236 6 1098 187 367 90 16 chr5 67289156 67289278 -85247981 + MIRb SINE MIR 129 259 -9 6 1098 330 246 41 24 chr5 67289348 67289478 -85247781 - MIR SINE MIR -56 152 29 6 1098 217 309 55 0 chr5 67291086 67291141 -85246118 + L2c LINE L2 3329 3386 -1 6 1098 311 148 11 33 chr5 67291396 67291487 -85245772 + GA-rich Low_complexity Low_complexity 2 90 0 6 1098 182 156 22 0 chr5 67291607 67291652 -85245607 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1098 298 61 41 0 chr5 67293294 67293343 -85243916 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 6 1098 423 0 0 0 chr5 67294237 67294284 -85242975 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1098 258 105 0 0 chr5 67295754 67295792 -85241467 + (ATGGTG)n Simple_repeat Simple_repeat 4 41 0 6 1098 204 40 0 0 chr5 67296377 67296402 -85240857 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1098 894 282 55 18 chr5 67298121 67298312 -85238947 - B4A SINE B4 -8 284 84 6 1098 504 0 0 0 chr5 67298312 67298368 -85238891 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1098 894 282 55 18 chr5 67298368 67298450 -85238809 - B4A SINE B4 -209 83 1 6 1098 651 265 134 31 chr5 67298908 67299259 -85238000 - L1MA7 LINE L1 -7 6284 5898 6 1098 282 87 0 0 chr5 67299915 67299961 -85237298 + (A)n Simple_repeat Simple_repeat 1 46 0 6 1098 738 269 111 28 chr5 67300642 67300894 -85236365 + B4A SINE B4 3 275 -17 6 1098 257 239 30 0 chr5 67300921 67300988 -85236271 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1098 558 91 30 0 chr5 67301069 67301168 -85236091 + (TTATA)n Simple_repeat Simple_repeat 5 106 0 6 1098 306 336 46 0 chr5 67301712 67301843 -85235416 - L4 LINE RTE -177 1852 1716 6 1098 369 84 42 0 chr5 67301843 67301914 -85235345 + (TA)n Simple_repeat Simple_repeat 1 74 0 6 1098 609 326 70 4 chr5 67302417 67302688 -85234571 + MER58B DNA MER1_type 51 339 -2 6 1098 555 78 0 0 chr5 67303327 67303404 -85233855 + (TTA)n Simple_repeat Simple_repeat 2 78 0 6 1098 183 378 0 26 chr5 67303721 67303797 -85233462 - L2c LINE L2 -181 3206 3133 6 1098 281 82 20 0 chr5 67304618 67304667 -85232592 + (TTAA)n Simple_repeat Simple_repeat 3 52 0 6 1098 196 308 159 53 chr5 67305813 67305964 -85231295 - MIRb SINE MIR -100 168 2 6 1098 281 256 26 0 chr5 67306041 67306119 -85231140 + ID4 SINE ID 3 82 -1 6 1098 216 149 0 0 chr5 67309996 67310043 -85227216 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 6 1098 318 148 0 90 chr5 67311057 67311096 -85226163 + HAL1-3A_ME LINE L1 1974 2012 -846 6 1098 462 75 0 0 chr5 67311096 67311163 -85226096 + (CCA)n Simple_repeat Simple_repeat 2 68 0 6 1098 318 148 0 90 chr5 67311163 67311190 -85226069 + HAL1-3A_ME LINE L1 2013 2034 -824 6 1098 703 236 168 4 chr5 67311636 67311874 -85225385 - B4A SINE B4 -9 283 7 6 1098 213 339 73 28 chr5 67312019 67312198 -85225061 + MIRb SINE MIR 66 252 -16 6 1098 321 337 62 22 chr5 67312546 67312819 -85224440 - B4A SINE B4 -7 285 2 6 1098 1276 236 78 14 chr5 67312921 67313305 -85223954 - MTD LTR MaLR -14 405 18 6 1098 244 240 127 40 chr5 67313643 67313746 -85223513 - MIRc SINE MIR -22 186 78 6 1098 447 312 9 74 chr5 67315200 67315348 -85221911 - B1_Mur1 SINE Alu 0 147 1 6 1098 258 284 33 92 chr5 67315242 67315362 -85221897 - MT2B LTR ERVL -336 265 153 6 1098 813 184 70 50 chr5 67315925 67316125 -85221134 + B3 SINE B2 1 204 -12 6 1098 393 39 0 0 chr5 67316536 67316587 -85220672 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1098 504 304 25 42 chr5 67316596 67316801 -85220458 - B4A SINE B4 -4 288 87 6 1098 1170 73 12 0 chr5 67317633 67317797 -85219462 + B2_Mm2 SINE B2 2 167 -28 6 1098 30 59 0 0 chr5 67317840 67317891 -85219368 + AT_rich Low_complexity Low_complexity 1 51 0 6 1098 204 143 0 0 chr5 67319228 67319270 -85217989 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 6 1098 26 64 0 0 chr5 67320117 67320164 -85217095 + AT_rich Low_complexity Low_complexity 1 47 0 6 1098 598 306 38 35 chr5 67320288 67320633 -85216626 - L1ME4a LINE L1 -221 5903 5558 6 1098 274 266 53 11 chr5 67321225 67321320 -85215939 - PB1D10 SINE Alu -18 99 1 6 1098 205 191 24 0 chr5 67322263 67322305 -85214954 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1098 748 238 131 16 chr5 67322342 67322586 -85214673 - B4A SINE B4 -19 273 2 6 1098 400 279 21 14 chr5 67322837 67322979 -85214280 - B1F SINE Alu 0 149 7 6 1098 306 123 0 0 chr5 67323076 67323133 -85214126 + (CACCAT)n Simple_repeat Simple_repeat 4 60 0 6 1098 789 333 27 13 chr5 67323139 67323437 -85213822 + ORR1D2 LTR MaLR 1 302 -68 6 1098 464 319 11 63 chr5 67325616 67325766 -85211493 + RSINE1 SINE B4 1 147 -18 6 1098 426 20 0 0 chr5 67325766 67325817 -85211442 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1098 464 319 11 63 chr5 67325817 67325840 -85211419 + RSINE1 SINE B4 148 165 0 6 1098 665 245 87 44 chr5 67326387 67326823 -85210436 + RLTR15 LTR ERVK 1 333 -26 6 1098 501 289 131 17 chr5 67327146 67327382 -85209877 - L1MA7 LINE L1 -319 5972 5710 6 1098 213 132 0 0 chr5 67328242 67328280 -85208979 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1098 411 193 0 0 chr5 67328279 67328362 -85208897 + (TA)n Simple_repeat Simple_repeat 1 83 0 6 1098 664 252 20 0 chr5 67329238 67329385 -85207874 + B3 SINE B2 1 150 -66 6 1098 255 78 59 0 chr5 67329417 67329468 -85207791 + (CATA)n Simple_repeat Simple_repeat 1 54 0 6 1098 594 63 0 0 chr5 67329616 67329695 -85207564 + (TTCCC)n Simple_repeat Simple_repeat 2 80 0 6 1098 600 263 176 34 chr5 67329781 67330089 -85207170 - MLT1A0 LTR MaLR -14 351 1 6 1098 1425 302 65 15 chr5 67330092 67330678 -85206581 - L1MB4 LINE L1 -128 6052 5417 6 1098 690 53 0 0 chr5 67331935 67332030 -85205229 + (CAAAA)n Simple_repeat Simple_repeat 3 97 0 6 1098 25 31 0 0 chr5 67332564 67332596 -85204663 + AT_rich Low_complexity Low_complexity 1 32 0 6 1098 247 348 95 26 chr5 67332854 67333158 -85204101 - LTR79 LTR ERVL -60 467 143 6 1098 203 261 0 0 chr5 67333646 67333692 -85203567 + L2a LINE L2 3368 3413 -13 6 1098 1148 63 14 0 chr5 67333722 67333865 -85203394 + B1_Mus1 SINE Alu 3 147 -1 6 1098 207 0 0 0 chr5 67334093 67334116 -85203143 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1098 371 244 0 0 chr5 67336315 67336393 -85200866 - MER44B DNA MER2_type -4 546 469 6 1098 1010 286 130 28 chr5 67336759 67337158 -85200101 - MER44B DNA MER2_type -103 447 8 6 1098 214 357 41 14 chr5 67337189 67337334 -85199925 - MIRb SINE MIR -36 232 84 6 1098 306 0 0 0 chr5 67337432 67337466 -85199793 + (TC)n Simple_repeat Simple_repeat 2 35 0 6 1098 474 18 0 0 chr5 67337466 67337520 -85199739 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1098 399 271 39 39 chr5 67337559 67337686 -85199573 - RSINE1 SINE B4 -31 134 8 6 1098 462 294 82 29 chr5 67338410 67338617 -85198642 + MER58A DNA MER1_type 5 222 -2 6 1098 250 300 22 11 chr5 67339891 67339982 -85197277 + GA-rich Low_complexity Low_complexity 2 93 0 6 1098 322 272 57 64 chr5 67339982 67340139 -85197120 + HAL1-3A_ME LINE L1 2284 2439 -419 6 1098 228 269 72 41 chr5 67340301 67340398 -85196861 + MIR SINE MIR 77 176 -86 6 1098 315 92 222 62 chr5 67340854 67340935 -85196324 - URR1B DNA MER1_type -39 186 93 6 1098 414 88 0 0 chr5 67341153 67341221 -85196038 + (CAGA)n Simple_repeat Simple_repeat 3 70 0 6 1098 499 263 68 0 chr5 67341346 67341479 -85195780 + B1F SINE Alu 8 149 0 6 1098 614 301 46 23 chr5 67342353 67342571 -85194688 - MLT1E3 LTR MaLR -2 622 400 7 1098 240 217 116 0 chr5 67342739 67342808 -85194451 - MLT1E3 LTR MaLR -573 81 5 7 1098 360 0 0 0 chr5 67342986 67343026 -85194233 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 7 1098 346 142 45 6 chr5 67343361 67343517 -85193742 + CT-rich Low_complexity Low_complexity 1 162 0 7 1098 1459 189 88 3 chr5 67343916 67344245 -85193014 - ORR1D1 LTR MaLR -9 365 9 7 1098 938 259 54 14 chr5 67344253 67344476 -85192783 - B4A SINE B4 -59 233 2 7 1098 682 283 6 11 chr5 67345749 67345931 -85191328 + B3A SINE B2 3 183 -15 7 1098 509 270 14 14 chr5 67345979 67346118 -85191141 + B1F2 SINE Alu 1 139 -10 7 1098 405 58 0 0 chr5 67346312 67346364 -85190895 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 7 1098 1254 90 0 0 chr5 67346786 67346964 -85190295 + (TCC)n Simple_repeat Simple_repeat 3 180 0 7 1098 776 196 6 0 chr5 67346966 67347145 -85190114 + CT-rich Low_complexity Low_complexity 1 180 0 7 1098 3750 57 4 11 chr5 67347471 67347948 -85189311 + L1_Mus3 LINE L1 6165 6638 0 7 1098 299 276 14 50 chr5 67348038 67348179 -85189080 + CT-rich Low_complexity Low_complexity 3 138 0 7 1098 204 135 0 0 chr5 67348218 67348255 -85189004 + (TCCCC)n Simple_repeat Simple_repeat 5 41 0 7 1098 228 236 18 0 chr5 67348272 67348327 -85188932 - L2a LINE L2 0 3426 3371 7 1098 216 0 0 0 chr5 67349815 67349839 -85187420 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1098 932 68 23 0 chr5 67350542 67350675 -85186584 - B2_Mm2 SINE B2 -6 189 54 7 1098 195 42 0 0 chr5 67352133 67352157 -85185102 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1098 1272 20 7 0 chr5 67352596 67352742 -85184517 - B1_Mus1 SINE Alu 0 148 2 7 1098 786 214 0 0 chr5 67352774 67352919 -85184340 + B3 SINE B2 4 148 -68 7 1098 582 238 8 0 chr5 67353829 67353955 -85183304 + RSINE1 SINE B4 3 129 -36 7 1098 441 0 0 0 chr5 67353971 67354020 -85183239 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1098 816 117 0 0 chr5 67354021 67354166 -85183093 + (GA)n Simple_repeat Simple_repeat 2 146 0 7 1098 975 121 0 0 chr5 67354295 67354444 -85182815 + URR1A DNA MER1_type 78 226 0 7 1098 281 231 37 49 chr5 67354513 67354595 -85182664 + ID4 SINE ID 3 83 0 7 1098 500 277 64 85 chr5 67355170 67355498 -85181761 - MLT1J LTR MaLR -74 438 118 7 1098 334 181 72 19 chr5 67355703 67355809 -85181450 + MLT1A1 LTR MaLR 259 401 -7 7 1098 639 39 0 0 chr5 67357228 67357306 -85179953 + (CA)n Simple_repeat Simple_repeat 1 78 0 7 1098 183 80 0 0 chr5 67358300 67358325 -85178934 + (TTC)n Simple_repeat Simple_repeat 3 27 0 7 1098 1355 148 13 18 chr5 67358627 67358854 -85178405 + URR1A DNA MER1_type 1 226 0 7 1098 233 29 29 0 chr5 67359218 67359252 -85178007 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1098 252 0 0 0 chr5 67361445 67361473 -85175786 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1098 354 260 0 0 chr5 67361475 67361552 -85175707 - ID4 SINE ID -3 80 4 7 1098 189 247 206 0 chr5 67363493 67363566 -85173693 - MIR SINE MIR -134 128 41 7 1098 329 319 84 28 chr5 67364389 67364531 -85172728 - MIR SINE MIR -9 253 104 7 1098 239 327 19 19 chr5 67366340 67366443 -85170816 - L2a LINE L2 -4 3422 3320 7 1098 593 338 35 67 chr5 67367907 67368278 -85168981 - ORR1E LTR MaLR 0 359 1 7 1098 1132 89 0 0 chr5 67368509 67368655 -85168604 + B1_Mm SINE Alu 2 147 0 7 1098 441 264 42 18 chr5 67369535 67369701 -85167558 + (CA)n Simple_repeat Simple_repeat 1 170 0 7 1098 181 57 28 28 chr5 67369853 67369889 -85167370 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 7 1099 477 0 0 0 chr5 67371069 67371122 -85166137 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1099 241 280 26 78 chr5 67371480 67371535 -85165724 - ID_B1 SINE B4 0 224 115 7 1099 256 262 0 0 chr5 67371535 67371596 -85165663 - PB1D10 SINE Alu -23 94 34 7 1099 255 304 122 0 chr5 67372823 67372938 -85164321 + MIR SINE MIR 21 149 -113 7 1099 738 221 25 49 chr5 67373652 67373814 -85163445 - RSINE1 SINE B4 0 165 8 7 1099 268 315 0 0 chr5 67373848 67373921 -85163338 - ID4 SINE ID -6 77 5 7 1099 332 311 94 90 chr5 67375747 67375980 -85161279 + B4A SINE B4 3 236 -56 7 1099 247 169 203 58 chr5 67377846 67377915 -85159344 + ID4 SINE ID 2 80 -3 7 1099 226 224 0 0 chr5 67381380 67381429 -85155830 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1099 350 291 112 0 chr5 67381449 67381583 -85155676 - RSINE1 SINE B4 -14 151 3 7 1099 755 108 8 0 chr5 67381991 67382111 -85155148 + (GA)n Simple_repeat Simple_repeat 1 121 0 7 1099 360 0 0 0 chr5 67383120 67383160 -85154099 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1099 1033 70 0 0 chr5 67383344 67383487 -85153772 + B1_Mus1 SINE Alu 6 148 0 7 1099 198 103 0 0 chr5 67383487 67383516 -85153743 + (GAAAA)n Simple_repeat Simple_repeat 5 33 0 7 1099 216 0 0 0 chr5 67384831 67384855 -85152404 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1099 405 0 0 0 chr5 67387013 67387058 -85150201 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1099 459 0 0 0 chr5 67387273 67387324 -85149935 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1099 317 283 195 6 chr5 67388817 67388991 -85148268 - MIR SINE MIR -9 253 47 7 1099 420 20 0 0 chr5 67389831 67389880 -85147379 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 1099 661 122 17 0 chr5 67390641 67390756 -85146503 + (GA)n Simple_repeat Simple_repeat 1 117 0 7 1099 657 38 0 0 chr5 67392104 67392184 -85145075 + (TG)n Simple_repeat Simple_repeat 1 80 0 7 1099 360 88 0 0 chr5 67392305 67392362 -85144897 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1099 266 279 35 80 chr5 67392467 67392580 -85144679 + Charlie9 DNA MER1_type 1 108 -2649 7 1099 264 313 48 0 chr5 67392887 67392970 -85144289 - MIR SINE MIR -144 118 32 7 1099 21 36 0 0 chr5 67393111 67393139 -85144120 + AT_rich Low_complexity Low_complexity 1 28 0 7 1099 306 0 0 0 chr5 67393193 67393227 -85144032 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1099 288 0 0 0 chr5 67393227 67393258 -85144001 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1099 1260 48 0 0 chr5 67393300 67393447 -85143812 + B1_Mus2 SINE Alu 1 147 0 7 1099 655 317 123 37 chr5 67393982 67394241 -85143018 - MLT1C LTR MaLR 0 467 205 7 1099 981 17 0 0 chr5 67394241 67394356 -85142903 + (TG)n Simple_repeat Simple_repeat 2 116 0 7 1099 655 317 123 37 chr5 67394356 67394479 -85142780 - MLT1C LTR MaLR -263 204 54 7 1099 342 252 0 108 chr5 67394672 67394725 -85142534 + PB1D10 SINE Alu 1 53 -64 7 1099 1048 112 75 53 chr5 67394725 67394913 -85142346 + B2_Mm2 SINE B2 1 192 -3 7 1099 342 252 0 108 chr5 67394913 67394979 -85142280 + PB1D10 SINE Alu 54 107 -10 7 1099 912 19 0 0 chr5 67395024 67395130 -85142129 + (TC)n Simple_repeat Simple_repeat 1 106 0 7 1099 516 16 0 0 chr5 67395693 67395754 -85141505 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1099 10022 64 14 11 chr5 67396363 67398292 -85138967 - L1_Mus2 LINE L1 0 6566 4634 7 1099 267 54 0 0 chr5 67398292 67398329 -85138930 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 7 1099 10022 79 7 17 chr5 67398329 67398433 -85138826 - L1_Mus2 LINE L1 -1250 4633 4530 7 1099 806 117 34 21 chr5 67398555 67398789 -85138470 + (TCTA)n Simple_repeat Simple_repeat 1 236 0 7 1099 207 259 19 0 chr5 67398810 67398864 -85138395 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1099 335 353 15 0 chr5 67399003 67399136 -85138123 + B1F SINE Alu 2 136 -13 7 1099 198 103 0 0 chr5 67399138 67399167 -85138092 + (CTAA)n Simple_repeat Simple_repeat 3 31 0 7 1099 531 0 0 0 chr5 67400336 67400395 -85136864 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1099 315 0 0 0 chr5 67400395 67400429 -85136830 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1099 1051 265 147 15 chr5 67400613 67400946 -85136313 + MTEa LTR MaLR 3 379 0 7 1099 306 0 0 0 chr5 67403234 67403268 -85133991 + (TC)n Simple_repeat Simple_repeat 2 35 0 7 1099 306 0 0 0 chr5 67404127 67404161 -85133098 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1099 808 43 198 0 chr5 67404161 67404277 -85132982 - B1_Mus1 SINE Alu 0 148 10 7 1099 481 187 124 22 chr5 67404166 67404303 -85132956 - B4 SINE B4 -71 221 71 7 1099 423 239 90 14 chr5 67404308 67404452 -85132807 + MER104 DNA Tc2 24 178 -3 7 1099 361 189 22 0 chr5 67404831 67404921 -85132338 + (TA)n Simple_repeat Simple_repeat 1 92 0 7 1099 255 322 71 94 chr5 67405280 67405407 -85131852 + PB1 SINE Alu 1 124 -3 7 1099 298 325 102 8 chr5 67405293 67405411 -85131848 + ID_B1 SINE B4 96 224 0 7 1099 258 301 41 0 chr5 67405422 67405495 -85131764 + ID4_ SINE ID 8 83 0 7 1099 34 24 0 0 chr5 67405676 67405717 -85131542 + AT_rich Low_complexity Low_complexity 1 41 0 7 1099 482 165 22 29 chr5 67405717 67405854 -85131405 + (TATG)n Simple_repeat Simple_repeat 2 137 0 7 1099 426 311 0 8 chr5 67405854 67405977 -85131282 + RMER12 LTR ERVK 770 891 -431 7 1099 423 0 0 0 chr5 67406139 67406186 -85131073 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 7 1099 277 326 14 20 chr5 67406651 67406798 -85130461 + (CATATA)n Simple_repeat Simple_repeat 6 151 0 7 1099 246 244 24 49 chr5 67406884 67406966 -85130293 - ID4_ SINE ID -1 82 3 7 1099 816 277 42 27 chr5 67408255 67408518 -85128741 + B4A SINE B4 6 272 -20 7 1099 468 0 0 0 chr5 67409172 67409224 -85128035 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1099 1914 173 3 44 chr5 67409237 67409420 -85127839 - ORR1D1 LTR MaLR -23 351 176 7 1099 821 45 12 71 chr5 67409420 67409589 -85127670 + (CAGAGA)n Simple_repeat Simple_repeat 4 162 0 8 1099 1914 173 3 44 chr5 67409589 67409767 -85127492 - ORR1D1 LTR MaLR -199 175 5 7 1099 339 336 48 0 chr5 67410484 67410588 -85126671 - L2b LINE L2 -4 3371 3263 8 1099 358 317 175 7 chr5 67411506 67411649 -85125610 + B3A SINE B2 4 170 -28 8 1099 303 130 0 0 chr5 67411655 67411709 -85125550 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1099 314 98 0 19 chr5 67411722 67411774 -85125485 + (AGGGGG)n Simple_repeat Simple_repeat 5 55 0 8 1099 301 304 192 0 chr5 67412504 67412629 -85124630 + B1_Mur2 SINE Alu 1 149 0 8 1099 215 167 19 0 chr5 67412632 67412650 -85124609 + polypurine Low_complexity Low_complexity 1 19 0 8 1099 1061 78 0 24 chr5 67412650 67412820 -85124439 + (GAA)n Simple_repeat Simple_repeat 3 168 0 8 1099 215 167 19 0 chr5 67412820 67412855 -85124404 + polypurine Low_complexity Low_complexity 20 54 0 8 1099 228 163 0 0 chr5 67412842 67412885 -85124374 + GA-rich Low_complexity Low_complexity 1 43 0 8 1099 254 264 21 62 chr5 67413848 67413945 -85123314 + ORSL-2b DNA Tip100 404 496 -12 8 1099 22 0 0 0 chr5 67414754 67414776 -85122483 + AT_rich Low_complexity Low_complexity 1 22 0 8 1099 650 47 0 11 chr5 67415124 67415211 -85122048 + (GAGAA)n Simple_repeat Simple_repeat 4 89 0 8 1099 554 28 14 0 chr5 67415213 67415285 -85121974 + (GGGA)n Simple_repeat Simple_repeat 3 75 0 8 1099 426 39 0 0 chr5 67415285 67415337 -85121922 + (CAAG)n Simple_repeat Simple_repeat 3 54 0 8 1099 186 43 0 0 chr5 67416879 67416902 -85120357 + (C)n Simple_repeat Simple_repeat 1 23 0 8 1099 204 301 40 27 chr5 67417647 67417722 -85119537 + MIRb SINE MIR 158 233 -35 8 1099 383 353 22 8 chr5 67419348 67419482 -85117777 - MIRb SINE MIR -117 151 16 8 1099 860 228 11 6 chr5 67419623 67419804 -85117455 - ORR1E LTR MaLR -177 182 1 8 1099 1178 75 0 0 chr5 67422323 67422470 -85114789 + B1_Mm SINE Alu 1 147 0 8 1099 473 282 12 37 chr5 67422666 67422828 -85114431 + RSINE1 SINE B4 3 160 -5 8 1099 212 266 120 82 chr5 67422672 67422856 -85114403 + B3A SINE B2 8 198 0 8 1099 433 221 108 16 chr5 67423830 67423959 -85113300 - B1F SINE Alu -8 141 1 8 1099 183 42 0 0 chr5 67424286 67424310 -85112949 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1099 364 258 227 0 chr5 67424662 67424794 -85112465 + RSINE1 SINE B4 4 165 0 8 1099 327 146 0 0 chr5 67424800 67424855 -85112404 + (CACG)n Simple_repeat Simple_repeat 1 55 0 8 1099 1009 211 19 5 chr5 67424922 67425127 -85112132 + B3 SINE B2 2 209 -7 8 1099 21 0 0 0 chr5 67425561 67425582 -85111677 + AT_rich Low_complexity Low_complexity 1 21 0 8 1099 293 305 68 30 chr5 67425878 67426010 -85111249 + MIR SINE MIR 33 169 -93 8 1099 429 322 9 9 chr5 67427017 67427133 -85110126 + PB1D10 SINE Alu 1 116 -1 8 1099 183 80 0 0 chr5 67427167 67427192 -85110067 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 8 1099 2176 140 91 30 chr5 67428424 67428821 -85108438 + MTC LTR MaLR 1 421 0 8 1099 4467 10 4 0 chr5 67428847 67429338 -85107921 + MT2_Mm LTR ERVL 1 493 0 8 1099 48665 13 6 0 chr5 67429338 67434668 -85102591 + MERVL-int LTR ERVL 1 5364 -121 8 1099 386 132 12 50 chr5 67434668 67434748 -85102511 + ORR1A3-int LTR MaLR 564 640 -1323 8 1099 319 0 0 0 chr5 67434748 67434786 -85102473 + MERVL-int LTR ERVL 5448 5485 0 8 1099 4467 10 4 0 chr5 67434786 67435277 -85101982 + MT2_Mm LTR ERVL 1 493 0 8 1099 488 234 9 38 chr5 67436235 67436363 -85100896 - PB1D10 SINE Alu -20 127 6 8 1099 1400 201 18 57 chr5 67436738 67437092 -85100167 - Lx2B LINE L1 -4 6996 6657 8 1099 1700 171 64 20 chr5 67437511 67437868 -85099391 - ORR1D1 LTR MaLR -1 373 1 8 1099 4505 154 62 5 chr5 67438556 67439033 -85098226 - Lx4B LINE L1 -2 7056 6552 8 1099 378 0 0 0 chr5 67439033 67439075 -85098184 + (CTG)n Simple_repeat Simple_repeat 1 42 0 8 1099 4505 154 62 5 chr5 67439075 67439404 -85097855 - Lx4B LINE L1 -507 6551 6205 8 1099 183 42 0 0 chr5 67440161 67440185 -85097074 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 8 1099 238 88 0 0 chr5 67440185 67440219 -85097040 - B2_Mm1a SINE B2 -33 160 127 8 1099 243 79 0 0 chr5 67440258 67440296 -85096963 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 8 1099 1074 75 61 0 chr5 67440296 67440443 -85096816 - B2_Mm2 SINE B2 -38 157 2 8 1099 189 245 0 0 chr5 67440914 67440963 -85096296 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1099 275 358 0 0 chr5 67441797 67441864 -85095395 - B4A SINE B4 0 292 226 8 1099 324 0 0 0 chr5 67441866 67441902 -85095357 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1099 4023 87 49 0 chr5 67441906 67442459 -85094800 - L1_Mus4 LINE L1 -46 6590 6011 8 1099 635 106 0 31 chr5 67442459 67442556 -85094703 + 4.5SRNA scRNA scRNA 1 94 0 8 1099 447 262 9 37 chr5 67442541 67442648 -85094611 - B4A SINE B4 -62 230 127 8 1099 319 292 63 84 chr5 67442644 67442786 -85094473 - ID_B1 SINE B4 -85 139 1 8 1099 200 98 73 0 chr5 67442971 67443012 -85094247 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 8 1099 187 54 26 26 chr5 67443451 67443489 -85093770 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 8 1099 414 0 0 0 chr5 67444396 67444442 -85092817 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1099 527 241 22 29 chr5 67444722 67444859 -85092400 - B1F SINE Alu -9 140 5 8 1099 367 265 50 17 chr5 67444946 67445065 -85092194 - MER53 DNA hAT -67 126 4 8 1099 225 265 0 0 chr5 67447294 67447362 -85089897 + A-rich Low_complexity Low_complexity 1 68 0 8 1099 198 103 0 0 chr5 67449028 67449057 -85088202 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1099 412 221 0 103 chr5 67449208 67449324 -85087935 + B3A SINE B2 95 198 0 8 1099 342 241 0 46 chr5 67449742 67449829 -85087430 + RSINE1 SINE B4 3 85 -80 8 1099 318 106 0 0 chr5 67449960 67450007 -85087252 + (TATG)n Simple_repeat Simple_repeat 2 48 0 8 1099 397 215 54 7 chr5 67451281 67451417 -85085842 - B3 SINE B2 -3 213 1 8 1099 195 42 0 0 chr5 67452032 67452056 -85085203 + (G)n Simple_repeat Simple_repeat 1 24 0 8 1099 293 157 49 45 chr5 67453740 67454009 -85083250 + (GGATG)n Simple_repeat Simple_repeat 1 270 0 8 1099 799 269 33 51 chr5 67454927 67455100 -85082159 - ORR1E LTR MaLR -88 271 102 8 1099 1034 153 129 25 chr5 67455100 67455301 -85081958 + URR1B DNA MER1_type 1 222 -3 8 1099 799 269 33 51 chr5 67455301 67455401 -85081858 - ORR1E LTR MaLR -258 101 3 8 1099 261 0 0 0 chr5 67456502 67456531 -85080728 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1099 4447 106 66 31 chr5 67458024 67458755 -85078504 - RMER6A LTR ERVK 0 756 1 8 1099 254 29 29 0 chr5 67460288 67460323 -85076936 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 8 1099 452 257 113 20 chr5 67460853 67461004 -85076255 + B3A SINE B2 16 180 -18 8 1099 386 179 0 59 chr5 67461179 67461280 -85075979 + MLT1A1 LTR MaLR 313 407 -1 8 1099 841 272 5 5 chr5 67461880 67462094 -85075165 + ID_B1 SINE B4 1 214 -10 8 1099 530 302 97 34 chr5 67462638 67462905 -85074354 + B4A SINE B4 8 291 -1 8 1099 407 248 24 16 chr5 67462905 67463028 -85074231 + (CA)n Simple_repeat Simple_repeat 1 124 0 8 1099 323 113 16 0 chr5 67463549 67463611 -85073648 + (TGG)n Simple_repeat Simple_repeat 1 63 0 8 1099 312 70 0 0 chr5 67463679 67463722 -85073537 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1099 1546 48 27 0 chr5 67463785 67463973 -85073286 - B2_Mm1a SINE B2 0 193 1 8 1099 866 161 15 0 chr5 67464223 67464360 -85072899 + B1_Mm SINE Alu 1 139 -8 8 1099 2032 139 40 9 chr5 67465772 67466120 -85071139 - RLTR15 LTR ERVK 0 359 1 8 1099 235 212 45 15 chr5 67466185 67466252 -85071007 - ORR1B1 LTR MaLR -320 74 6 8 1099 222 267 0 16 chr5 67467156 67467217 -85070042 + CT-rich Low_complexity Low_complexity 2 61 0 8 1099 198 0 0 0 chr5 67467230 67467252 -85070007 + (TC)n Simple_repeat Simple_repeat 1 22 0 8 1099 595 325 97 70 chr5 67467991 67468209 -85069050 + MER2 DNA MER2_type 5 231 -114 8 1099 1321 106 0 6 chr5 67468209 67468390 -85068869 + B2_Mm2 SINE B2 2 181 -14 8 1099 595 325 97 70 chr5 67468390 67468502 -85068757 + MER2 DNA MER2_type 232 344 -1 8 1099 236 231 39 0 chr5 67468759 67468863 -85068396 + CT-rich Low_complexity Low_complexity 4 111 0 8 1099 357 228 114 0 chr5 67468898 67468977 -85068282 - B1F SINE Alu -40 109 22 8 1099 341 254 97 26 chr5 67468977 67469011 -85068248 - ID_B1 SINE B4 -37 187 67 8 1099 838 227 19 33 chr5 67470117 67470331 -85066928 + B3 SINE B2 3 213 -3 8 1099 183 156 0 0 chr5 67470546 67470578 -85066681 + (CA)n Simple_repeat Simple_repeat 2 33 0 8 1099 324 0 0 0 chr5 67470634 67470670 -85066589 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 8 1099 722 157 0 0 chr5 67470671 67470792 -85066467 - B1_Mur4 SINE Alu -11 139 19 8 1099 597 14 0 0 chr5 67470794 67470864 -85066395 + (CA)n Simple_repeat Simple_repeat 2 71 0 8 1099 657 154 0 0 chr5 67470864 67470974 -85066285 - B1_Mus2 SINE Alu -27 120 11 8 1099 245 271 104 70 chr5 67472080 67472149 -85065110 - L1MA4 LINE L1 -292 6008 5930 8 1099 1162 223 156 68 chr5 67472149 67472297 -85064962 - RMER10B LTR ERVL 0 398 195 8 1099 207 0 0 0 chr5 67472297 67472320 -85064939 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1099 384 22 0 0 chr5 67472320 67472364 -85064895 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1099 1162 223 156 68 chr5 67472364 67472580 -85064679 - RMER10B LTR ERVL -204 194 2 8 1099 245 271 104 70 chr5 67472580 67472625 -85064634 - L1MA4 LINE L1 -371 5929 5890 8 1099 237 292 82 10 chr5 67472636 67472733 -85064526 - L1MA4 LINE L1 -526 5774 5671 8 1099 229 0 54 27 chr5 67473428 67473465 -85063794 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 8 1099 610 247 73 5 chr5 67473467 67473658 -85063601 - ID_B1 SINE B4 -20 204 1 8 1099 216 0 0 0 chr5 67474718 67474742 -85062517 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1099 200 263 27 116 chr5 67474852 67474964 -85062295 + MIRm SINE MIR 77 178 -98 8 1099 722 224 7 13 chr5 67475544 67475683 -85061576 + B1_Mus1 SINE Alu 1 140 -8 8 1099 207 0 0 0 chr5 67475683 67475706 -85061553 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 9 1099 224 304 169 34 chr5 67475830 67476007 -85061252 + MIR SINE MIR 28 228 -40 9 1099 238 178 0 0 chr5 67476119 67476164 -85061095 + RMER19C LTR ERVK 1 45 -566 9 1099 1314 243 39 89 chr5 67476174 67476705 -85060554 + RMER19C LTR ERVK 159 611 0 9 1099 777 249 107 69 chr5 67476705 67477068 -85060191 - MTEb LTR MaLR 0 379 3 9 1099 235 259 22 45 chr5 67477304 67477393 -85059866 - MLT1A LTR MaLR -218 156 70 9 1099 366 23 0 0 chr5 67477599 67477642 -85059617 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1099 320 260 67 13 chr5 67477696 67477826 -85059433 - B1_Mus1 SINE Alu 0 149 4 9 1099 1116 151 0 173 chr5 67478282 67478554 -85058705 - URR1A DNA MER1_type 0 226 2 9 1099 189 0 0 0 chr5 67479019 67479040 -85058219 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1099 459 0 0 0 chr5 67479616 67479667 -85057592 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1099 324 0 0 0 chr5 67480035 67480071 -85057188 + (GA)n Simple_repeat Simple_repeat 1 36 0 9 1099 1098 166 54 0 chr5 67480409 67480614 -85056645 + URR1A DNA MER1_type 11 226 0 9 1099 291 28 0 0 chr5 67480791 67480827 -85056432 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1099 503 244 151 48 chr5 67480890 67481161 -85056098 + L1MA8 LINE L1 5990 6288 -3 9 1099 564 296 26 34 chr5 67481330 67481564 -85055695 - Charlie4a DNA MER1_type -155 353 122 9 1099 377 294 105 15 chr5 67482230 67482430 -85054829 + MIR SINE MIR 20 237 -25 9 1099 411 231 110 15 chr5 67483697 67483825 -85053434 - ID_B1 SINE B4 -7 217 77 9 1099 243 0 0 0 chr5 67483825 67483852 -85053407 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 9 1099 243 0 0 0 chr5 67484208 67484235 -85053024 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1099 284 256 62 37 chr5 67484878 67484959 -85052300 - MER5A DNA MER1_type -106 83 1 9 1099 26 0 0 0 chr5 67486109 67486135 -85051124 + AT_rich Low_complexity Low_complexity 1 26 0 9 1099 182 37 37 0 chr5 67487115 67487142 -85050117 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 9 1099 25 31 0 0 chr5 67487303 67487335 -85049924 + GC_rich Low_complexity Low_complexity 1 32 0 9 1099 222 180 0 0 chr5 67487509 67487570 -85049689 + (CCG)n Simple_repeat Simple_repeat 3 63 0 9 1099 29 0 0 0 chr5 67487592 67487621 -85049638 + GC_rich Low_complexity Low_complexity 1 29 0 9 1099 459 0 0 0 chr5 67487940 67487991 -85049268 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1099 600 179 0 0 chr5 67488165 67488282 -85048977 + T-rich Low_complexity Low_complexity 1 117 0 9 1099 231 36 0 0 chr5 67492675 67492703 -85044556 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1099 219 139 0 0 chr5 67494139 67494175 -85043084 + (TTC)n Simple_repeat Simple_repeat 1 36 0 9 1099 22 0 0 0 chr5 67494673 67494695 -85042564 + AT_rich Low_complexity Low_complexity 1 22 0 9 1099 243 146 0 0 chr5 67494904 67494945 -85042314 + (ATG)n Simple_repeat Simple_repeat 3 43 0 9 1099 894 248 48 0 chr5 67496152 67496358 -85040901 + B3 SINE B2 1 216 0 9 1099 324 0 0 0 chr5 67496485 67496521 -85040738 + (TC)n Simple_repeat Simple_repeat 2 37 0 9 1099 450 0 0 0 chr5 67496521 67496570 -85040689 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1099 3932 93 5 57 chr5 67496680 67497207 -85040052 - Lx LINE L1 0 6654 6148 9 1099 195 42 0 0 chr5 67497207 67497231 -85040028 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1099 1063 74 0 0 chr5 67497232 67497367 -85039892 - B1_Mus1 SINE Alu -12 136 2 9 1099 3932 93 5 57 chr5 67497367 67497432 -85039827 - Lx LINE L1 -507 6147 6091 9 1099 206 222 0 53 chr5 67497727 67497784 -85039475 + C-rich Low_complexity Low_complexity 1 54 0 9 1099 335 349 142 4 chr5 67497951 67498190 -85039069 + MLT1I LTR MaLR 17 288 -123 9 1099 2033 157 49 27 chr5 67498337 67498453 -85038806 + MTC LTR MaLR 1 130 -291 9 1099 3400 38 0 5 chr5 67498453 67498851 -85038408 + MTA_Mm LTR MaLR 1 396 0 9 1099 2033 157 49 27 chr5 67498851 67499139 -85038120 + MTC LTR MaLR 131 414 -7 9 1099 189 0 0 0 chr5 67500381 67500402 -85036857 + (CAG)n Simple_repeat Simple_repeat 3 23 0 1 1099 350 42 0 20 chr5 67501092 67501141 -85036118 + (TAAAA)n Simple_repeat Simple_repeat 3 50 0 2 1099 187 270 81 0 chr5 67501825 67501899 -85035360 + L3 LINE CR1 2789 2868 -1621 3 1100 969 280 57 39 chr5 67502083 67502362 -85034897 + B4 SINE B4 9 292 0 4 1100 207 250 0 0 chr5 67502362 67502414 -85034845 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1100 297 236 0 0 chr5 67502442 67502590 -85034669 + (CA)n Simple_repeat Simple_repeat 1 148 0 5 1100 197 198 12 0 chr5 67502605 67502686 -85034573 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1100 29 0 0 0 chr5 67503116 67503145 -85034114 + AT_rich Low_complexity Low_complexity 1 29 0 6 1100 256 247 24 83 chr5 67503420 67503504 -85033755 - ID2 SINE ID -3 80 2 7 1100 569 202 96 8 chr5 67503655 67503780 -85033479 - B1_Mur1 SINE Alu 0 149 14 8 1100 230 259 17 0 chr5 67504191 67504249 -85033010 + GA-rich Low_complexity Low_complexity 3 61 0 9 1100 278 197 0 29 chr5 67504288 67504356 -85032903 - L1MC5 LINE L1 -897 7064 6999 1 1100 321 26 0 0 chr5 67504473 67504511 -85032748 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1100 400 272 16 23 chr5 67504533 67504661 -85032598 - B4A SINE B4 0 292 166 1 1100 7424 76 56 9 chr5 67504726 67506001 -85031258 - L1_Mus3 LINE L1 0 6638 5312 1 1100 269 266 89 0 chr5 67506001 67506080 -85031179 - B4A SINE B4 -206 86 1 1 1100 262 309 38 17 chr5 67506195 67506316 -85030943 - L1MC5 LINE L1 -1147 6895 6692 1 1100 688 297 91 30 chr5 67506661 67506925 -85030334 + L3 LINE CR1 3278 3557 -932 1 1100 517 220 8 41 chr5 67507044 67507167 -85030092 - B4A SINE B4 -30 262 144 1 1100 2116 123 35 0 chr5 67507237 67507553 -85029706 - ORR1A2 LTR MaLR 0 327 1 1 1100 7569 121 22 40 chr5 67507553 67508923 -85028336 - ORR1A2-int LTR MaLR 0 1963 619 1 1100 545 175 35 6 chr5 67509194 67509366 -85027893 + (TG)n Simple_repeat Simple_repeat 1 177 0 1 1100 333 171 51 0 chr5 67509377 67509494 -85027765 + (TG)n Simple_repeat Simple_repeat 2 124 0 1 1100 714 142 35 6 chr5 67509518 67509830 -85027429 + (TG)n Simple_repeat Simple_repeat 1 321 0 1 1100 778 176 220 0 chr5 67510115 67510297 -85026962 - URR1A DNA MER1_type 0 226 5 1 1100 182 37 0 36 chr5 67510695 67510723 -85026536 + (GGA)n Simple_repeat Simple_repeat 1 27 0 1 1100 313 268 71 21 chr5 67510982 67511123 -85026136 - RMER15 LTR ERVL -13 562 415 2 1100 769 299 89 33 chr5 67511416 67511844 -85025415 - Charlie1b DNA MER1_type -11 512 61 2 1100 591 217 7 65 chr5 67511916 67512054 -85025205 + B1_Mur3 SINE Alu 2 131 -18 2 1100 639 278 11 32 chr5 67512328 67512514 -85024745 - ID_B1 SINE B4 -42 182 1 2 1100 570 274 19 58 chr5 67513336 67513370 -85023889 - B1F SINE Alu 0 149 119 2 1100 2015 149 131 11 chr5 67513370 67513743 -85023516 + MTC LTR MaLR 4 421 0 2 1100 570 274 19 58 chr5 67513743 67513863 -85023396 - B1F SINE Alu -31 118 1 2 1100 1659 30 5 0 chr5 67514053 67514255 -85023004 + L1Md_F2 LINE L1 6373 6575 -7 2 1100 1178 63 0 0 chr5 67514263 67514405 -85022854 + B1_Mus1 SINE Alu 2 143 -5 2 1100 486 0 0 0 chr5 67514874 67514928 -85022331 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1100 445 235 0 20 chr5 67515157 67515254 -85022005 + B4A SINE B4 1 95 -197 2 1100 1070 158 16 83 chr5 67515254 67515496 -85021763 - MTC LTR MaLR 0 421 196 3 1100 7436 55 1 2 chr5 67515526 67516437 -85020822 - L1_Mus1 LINE L1 0 6567 5658 3 1100 1139 121 75 10 chr5 67516437 67516637 -85020622 - MTC LTR MaLR -207 214 2 3 1100 628 312 0 34 chr5 67516649 67516825 -85020434 + B4A SINE B4 100 269 -23 2 1100 879 155 0 0 chr5 67516834 67516989 -85020270 + GA-rich Low_complexity Low_complexity 2 156 0 3 1100 815 214 98 2 chr5 67516989 67517320 -85019939 + L1MD LINE L1 5106 5474 -885 3 1100 495 282 103 48 chr5 67517399 67517671 -85019588 - B4A SINE B4 -4 288 2 3 1100 452 262 121 0 chr5 67517683 67517832 -85019427 + L1MD LINE L1 5474 5640 -719 3 1100 253 265 122 16 chr5 67517854 67517979 -85019280 + L1M5 LINE L1 5694 5826 -2056 3 1100 215 227 0 0 chr5 67518075 67518119 -85019140 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1100 198 208 0 0 chr5 67518176 67518224 -85019035 + CT-rich Low_complexity Low_complexity 3 50 0 3 1100 373 261 110 13 chr5 67518274 67518429 -85018830 + MLT1I LTR MaLR 19 188 -223 3 1100 3180 65 8 12 chr5 67518840 67519242 -85018017 + MTB LTR MaLR 1 400 0 3 1100 437 290 55 88 chr5 67519457 67519729 -85017530 + L1MA5 LINE L1 5491 5753 -547 4 1100 495 302 89 4 chr5 67519733 67519969 -85017290 + L1MA5 LINE L1 6030 6285 -15 4 1100 452 187 36 36 chr5 67520052 67520163 -85017096 + PB1D7 SINE Alu 9 119 -1 4 1100 549 44 0 0 chr5 67520437 67520505 -85016754 + (TC)n Simple_repeat Simple_repeat 1 68 0 4 1100 225 0 0 0 chr5 67520505 67520529 -85016730 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1100 2610 160 60 22 chr5 67520544 67521082 -85016177 + RLTR12A LTR ERVK 1 558 -10 4 1100 22 35 0 0 chr5 67521088 67521117 -85016142 + AT_rich Low_complexity Low_complexity 1 29 0 4 1100 187 378 30 45 chr5 67521665 67521798 -85015461 + MIRc SINE MIR 19 149 -119 4 1100 331 297 0 0 chr5 67521840 67521941 -85015318 + (CA)n Simple_repeat Simple_repeat 1 101 0 4 1100 588 121 0 0 chr5 67521964 67522055 -85015204 + (CA)n Simple_repeat Simple_repeat 1 91 0 4 1100 1135 207 14 5 chr5 67522337 67522551 -85014708 - B3 SINE B2 0 216 1 4 1100 840 208 29 6 chr5 67522584 67522758 -85014501 - B3A SINE B2 -18 180 3 4 1100 530 220 71 102 chr5 67522780 67522823 -85014436 - B2_Mm2 SINE B2 0 195 152 5 1100 342 0 0 0 chr5 67522823 67522861 -85014398 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1100 679 214 20 17 chr5 67522861 67523014 -85014245 - B3A SINE B2 -44 151 5 5 1100 398 240 113 24 chr5 67523396 67523520 -85013739 + RSINE1 SINE B4 17 151 -14 5 1100 231 320 172 30 chr5 67524338 67524541 -85012718 + MIRb SINE MIR 26 257 -11 5 1100 2176 95 6 0 chr5 67524665 67524982 -85012277 + ORR1A2 LTR MaLR 1 319 -8 5 1100 231 42 40 40 chr5 67525268 67525318 -85011941 + (CAAA)n Simple_repeat Simple_repeat 1 50 0 5 1100 660 223 7 26 chr5 67525394 67525546 -85011713 - RSINE1 SINE B4 -14 151 3 5 1100 808 258 35 120 chr5 67526168 67526374 -85010885 + B4 SINE B4 3 213 -79 5 1100 213 39 0 0 chr5 67526374 67526400 -85010859 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 5 1100 808 258 35 120 chr5 67526400 67526510 -85010749 + B4 SINE B4 214 292 0 5 1100 476 81 14 0 chr5 67526522 67526596 -85010663 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1100 388 306 108 42 chr5 67526674 67526886 -85010373 + B4A SINE B4 1 226 -66 6 1100 860 177 0 7 chr5 67527144 67527292 -85009967 + B1_Mur2 SINE Alu 2 148 -1 6 1100 292 330 0 9 chr5 67527379 67527489 -85009770 - PB1D10 SINE Alu -4 113 5 6 1100 598 193 9 9 chr5 67528016 67528126 -85009133 - Lx8 LINE L1 -192 7281 7172 6 1100 262 250 36 36 chr5 67528134 67528217 -85009042 - Lx8 LINE L1 -573 6900 6818 6 1100 297 140 0 0 chr5 67528431 67528488 -85008771 + (TCC)n Simple_repeat Simple_repeat 3 59 0 6 1100 195 100 0 0 chr5 67528488 67528518 -85008741 + (CACCAT)n Simple_repeat Simple_repeat 6 35 0 6 1100 689 169 14 14 chr5 67528830 67528968 -85008291 + B1_Mur4 SINE Alu 2 139 -11 6 1100 180 0 0 0 chr5 67528968 67528988 -85008271 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 6 1100 1253 59 18 22 chr5 67528990 67529264 -85007995 + (TAGA)n Simple_repeat Simple_repeat 1 273 0 6 1100 346 277 6 4 chr5 67532914 67533016 -85004243 - PB1D10 SINE Alu 0 117 17 6 1100 486 0 0 0 chr5 67533016 67533070 -85004189 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1100 498 136 0 0 chr5 67533188 67533269 -85003990 + (GA)n Simple_repeat Simple_repeat 1 81 0 7 1100 313 116 0 28 chr5 67533339 67533410 -85003849 + (TA)n Simple_repeat Simple_repeat 1 69 0 7 1100 204 214 0 0 chr5 67534268 67534324 -85002935 + GA-rich Low_complexity Low_complexity 2 57 0 7 1100 282 309 104 11 chr5 67534809 67534992 -85002267 + MIR SINE MIR 13 212 -50 7 1100 876 265 125 37 chr5 67534993 67535346 -85001913 - MTD LTR MaLR -30 389 6 7 1100 317 290 0 42 chr5 67535914 67535986 -85001273 + ID_B1 SINE B4 85 153 -71 7 1100 1175 54 0 20 chr5 67535989 67536139 -85001120 + B1_Mus2 SINE Alu 1 147 0 7 1100 212 307 13 26 chr5 67536528 67536605 -85000654 - ID2 SINE ID 0 83 8 7 1100 386 232 0 75 chr5 67536614 67536721 -85000538 + ID_B1 SINE B4 78 176 -48 7 1100 225 0 0 0 chr5 67537175 67537200 -85000059 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 1100 653 0 13 0 chr5 67537623 67537700 -84999559 + (TG)n Simple_repeat Simple_repeat 1 78 0 8 1100 884 236 40 0 chr5 67538878 67539077 -84998182 + B3 SINE B2 4 210 -6 8 1100 231 189 0 0 chr5 67539303 67539356 -84997903 + (GGATG)n Simple_repeat Simple_repeat 4 56 0 8 1100 1070 52 52 0 chr5 67539398 67539534 -84997725 + B1_Mus1 SINE Alu 5 147 -1 8 1100 460 143 40 30 chr5 67539551 67539652 -84997607 + MLT1A1 LTR MaLR 303 404 -4 8 1100 3677 40 67 9 chr5 67539824 67540273 -84996986 + MT2C_Mm LTR ERVL 1 475 0 8 1100 642 26 0 0 chr5 67541266 67541342 -84995917 + (TG)n Simple_repeat Simple_repeat 2 77 0 8 1100 486 252 25 0 chr5 67544458 67544577 -84992682 - B1_Mur1 SINE Alu -5 144 23 8 1100 237 281 10 0 chr5 67544625 67544721 -84992538 - L1M3f LINE L1 -4095 1233 1137 8 1100 306 51 0 78 chr5 67544814 67544878 -84992381 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 9 1100 306 0 0 0 chr5 67544879 67544913 -84992346 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1100 528 224 87 29 chr5 67545234 67545372 -84991887 - ORR1D2 LTR MaLR -224 146 1 9 1100 898 294 92 9 chr5 67545613 67545959 -84991300 - MTE2b LTR MaLR -4 375 1 9 1100 24 32 0 0 chr5 67546098 67546129 -84991130 + AT_rich Low_complexity Low_complexity 1 31 0 9 1100 446 276 23 0 chr5 67546871 67547045 -84990214 + (CCCCAG)n Simple_repeat Simple_repeat 2 179 0 9 1100 184 246 14 0 chr5 67547090 67547228 -84990031 + (CCCCAG)n Simple_repeat Simple_repeat 4 143 0 9 1100 491 297 88 70 chr5 67547582 67547801 -84989458 - MLT1F1 LTR MaLR -233 327 108 9 1100 815 204 7 0 chr5 67547801 67547948 -84989311 + B1_Mur4 SINE Alu 1 148 -2 9 1100 491 284 88 55 chr5 67547948 67548050 -84989209 - MLT1F1 LTR MaLR -462 107 6 9 1100 666 58 0 0 chr5 67548611 67548698 -84988561 + (TG)n Simple_repeat Simple_repeat 2 88 0 9 1100 601 230 27 48 chr5 67548702 67548848 -84988411 + B1_Mur1 SINE Alu 6 148 -1 9 1100 224 29 86 0 chr5 67548856 67548891 -84988368 + (TAAAA)n Simple_repeat Simple_repeat 4 41 0 1 1100 783 304 86 32 chr5 67548891 67549265 -84987994 - MT2A LTR ERVL -139 394 1 1 1100 225 263 117 13 chr5 67549553 67549630 -84987629 - MER81 DNA AcHobo -14 100 16 1 1100 1306 122 23 5 chr5 67549783 67549998 -84987261 + URR1B DNA MER1_type 7 225 0 1 1100 182 211 183 73 chr5 67550531 67550613 -84986646 + MIR3 SINE MIR 97 187 -21 1 1100 1054 65 58 0 chr5 67550755 67550894 -84986365 + B1_Mus2 SINE Alu 1 147 0 1 1100 315 355 74 0 chr5 67552659 67552848 -84984411 + MER3 DNA MER1_type 7 209 0 1 1100 386 213 0 0 chr5 67552870 67552945 -84984314 + MIRb SINE MIR 37 111 -157 1 1100 289 261 0 0 chr5 67553175 67553240 -84984019 + L2a LINE L2 3358 3422 -4 1 1100 980 252 9 5 chr5 67554652 67554863 -84982396 - ID_B1 SINE B4 -4 220 9 1 1100 1437 205 144 3 chr5 67555048 67555415 -84981844 - Lx2B LINE L1 -3 6997 6579 1 1100 2181 273 155 27 chr5 67555457 67555917 -84981342 - L1MC2 LINE L1 -2 6342 5840 1 1100 3535 121 18 63 chr5 67555917 67556517 -84980742 - RMER15 LTR ERVL -2 573 1 1 1100 2181 258 125 30 chr5 67556517 67557090 -84980169 - L1MC2 LINE L1 -505 5839 5186 1 1100 580 301 19 5 chr5 67557569 67557776 -84979483 + L2b LINE L2 2699 2908 -511 1 1100 1095 82 29 0 chr5 67557910 67558081 -84979178 + (TTCTCC)n Simple_repeat Simple_repeat 3 178 0 1 1100 695 44 11 0 chr5 67558081 67558172 -84979087 + (TC)n Simple_repeat Simple_repeat 1 92 0 1 1100 190 282 132 33 chr5 67558258 67558379 -84978880 + L2b LINE L2 3240 3372 -3 1 1100 1730 150 31 19 chr5 67558431 67558485 -84978774 - ORR1B1 LTR MaLR 0 394 345 1 1100 1154 62 0 14 chr5 67558485 67558632 -84978627 + B1_Mus2 SINE Alu 1 145 -2 1 1100 1730 150 31 19 chr5 67558632 67558896 -84978363 - ORR1B1 LTR MaLR -50 344 72 1 1100 7611 104 18 16 chr5 67558896 67560261 -84976998 + Lx LINE L1 5289 6653 -1 1 1100 439 158 24 0 chr5 67560261 67560343 -84976916 - ORR1B1 LTR MaLR -310 84 1 1 1100 468 0 0 0 chr5 67560520 67560572 -84976687 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 1 1100 7677 158 31 20 chr5 67560782 67562107 -84975152 - Lx5 LINE L1 -89 6961 5622 1 1100 219 36 0 0 chr5 67562225 67562253 -84975006 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1100 1565 288 41 13 chr5 67563502 67563967 -84973292 + Lx8 LINE L1 6845 7322 -151 1 1100 270 245 185 0 chr5 67564082 67564266 -84972993 + Lx7 LINE L1 7299 7516 -180 1 1100 459 0 0 0 chr5 67564273 67564324 -84972935 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1100 374 216 29 0 chr5 67564327 67564429 -84972830 + Lx7 LINE L1 7592 7696 0 1 1100 22 0 0 0 chr5 67564606 67564628 -84972631 + AT_rich Low_complexity Low_complexity 1 22 0 1 1100 6478 58 4 1 chr5 67565098 67565900 -84971359 - L1Md_F2 LINE L1 -163 5720 4917 1 1100 7249 46 1 0 chr5 67565900 67566768 -84970491 + L1Md_F2 LINE L1 5714 6582 0 1 1100 219 36 0 0 chr5 67567266 67567294 -84969965 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1100 795 140 0 14 chr5 67568956 67569094 -84968165 + B1_Mur2 SINE Alu 9 144 -5 1 1100 549 0 0 0 chr5 67570888 67570949 -84966310 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 1 1100 504 45 0 0 chr5 67571164 67571231 -84966028 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1100 22 35 0 0 chr5 67571697 67571726 -84965533 + AT_rich Low_complexity Low_complexity 1 29 0 1 1100 600 281 19 12 chr5 67571726 67571888 -84965371 - RSINE1 SINE B4 0 165 3 1 1100 1074 124 0 0 chr5 67571898 67572108 -84965151 + (TTC)n Simple_repeat Simple_repeat 1 210 0 1 1100 345 99 56 0 chr5 67573041 67573112 -84964147 + (TATATG)n Simple_repeat Simple_repeat 1 75 0 1 1100 233 282 136 61 chr5 67573217 67573349 -84963910 - MLT1J LTR MaLR -146 366 225 1 1100 297 0 0 0 chr5 67573531 67573564 -84963695 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1100 273 293 16 57 chr5 67573567 67573690 -84963569 - MLT1A1 LTR MaLR 0 408 291 1 1100 864 231 36 0 chr5 67573691 67573886 -84963373 + B3 SINE B2 1 202 -14 1 1100 737 203 4 129 chr5 67574051 67574168 -84963091 + B3 SINE B2 8 116 -100 1 1100 797 129 322 0 chr5 67574168 67574339 -84962920 + URR1A DNA MER1_type 1 226 0 1 1100 737 203 4 129 chr5 67574339 67574453 -84962806 + B3 SINE B2 117 210 -6 1 1100 501 271 42 12 chr5 67574468 67574636 -84962623 - MIR SINE MIR -49 213 41 1 1100 291 270 0 0 chr5 67574669 67574732 -84962527 + B4A SINE B4 83 145 -147 1 1100 533 206 0 0 chr5 67574680 67574777 -84962482 + PB1D10 SINE Alu 9 105 -12 1 1100 609 301 71 50 chr5 67574782 67575065 -84962194 + B4 SINE B4 2 290 -2 1 1100 745 196 4 25 chr5 67575374 67575526 -84961733 + B3 SINE B2 10 160 -35 1 1100 849 20 0 0 chr5 67575526 67575625 -84961634 + (TC)n Simple_repeat Simple_repeat 1 99 0 1 1100 225 0 0 0 chr5 67575625 67575649 -84961610 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1100 504 238 71 87 chr5 67575649 67575679 -84961580 + B2_Mm2 SINE B2 161 189 -6 1 1100 442 196 103 0 chr5 67576672 67576779 -84960480 + RLTR42-int LTR ERVK 2855 2972 -2550 1 1100 468 0 0 0 chr5 67576829 67576881 -84960378 + (TTTTG)n Simple_repeat Simple_repeat 2 53 0 1 1100 1000 110 0 0 chr5 67576882 67577018 -84960241 - B1_Mus1 SINE Alu -12 136 1 1 1100 4349 183 38 56 chr5 67577043 67578009 -84959250 + RLTR42-int LTR ERVK 4002 4950 -572 1 1100 341 225 0 22 chr5 67577997 67578088 -84959171 + RLTR42-int LTR ERVK 5390 5478 -44 1 1100 465 19 0 0 chr5 67578990 67579044 -84958215 + (TTA)n Simple_repeat Simple_repeat 3 56 0 1 1100 586 192 0 0 chr5 67579050 67579154 -84958105 - B1F2 SINE Alu -10 139 36 1 1100 236 234 118 47 chr5 67579085 67579170 -84958089 - MT2B LTR ERVL -344 257 167 1 1100 637 329 107 40 chr5 67579854 67580228 -84957031 - MLT2C2 LTR ERVL -64 400 2 1 1100 288 257 0 0 chr5 67580291 67580431 -84956828 + CT-rich Low_complexity Low_complexity 2 141 0 1 1100 333 0 0 0 chr5 67580985 67581022 -84956237 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1100 417 123 0 0 chr5 67581598 67581663 -84955596 + (T)n Simple_repeat Simple_repeat 1 65 0 1 1100 251 239 79 135 chr5 67581981 67582107 -84955152 + L1_Mur3 LINE L1 5643 5761 -119 1 1100 962 108 14 0 chr5 67582903 67583042 -84954217 + B1_Mur3 SINE Alu 1 141 -8 1 1100 413 346 8 8 chr5 67583042 67583170 -84954089 + B4A SINE B4 6 133 -159 1 1100 254 325 0 11 chr5 67583549 67583636 -84953623 - L1M5 LINE L1 -534 5590 5505 1 1100 913 126 0 20 chr5 67583752 67583898 -84953361 - B1_Mus1 SINE Alu 0 148 6 1 1100 355 328 43 0 chr5 67585107 67585223 -84952036 + B1F1 SINE Alu 6 126 -23 1 1100 348 24 0 0 chr5 67585358 67585399 -84951860 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1100 348 277 79 22 chr5 67585453 67585614 -84951645 + MLT1J LTR MaLR 51 263 -249 1 1100 5266 41 0 13 chr5 67585895 67586531 -84950728 - L1_Mus1 LINE L1 0 6567 5940 1 1100 675 161 73 0 chr5 67586563 67586687 -84950572 - B3 SINE B2 -83 133 1 1 1100 328 211 18 174 chr5 67586695 67586804 -84950455 + PB1D10 SINE Alu 24 115 -2 1 1100 447 229 69 38 chr5 67586826 67586985 -84950274 + Charlie7 DNA MER1_type 554 717 -1895 1 1100 320 335 105 84 chr5 67587648 67587980 -84949279 - MER2 DNA MER2_type -2 343 5 1 1100 388 313 82 29 chr5 67587991 67588163 -84949096 - MIR SINE MIR -74 194 15 1 1100 8424 85 29 0 chr5 67588229 67589409 -84947850 + MusHAL1 LINE L1 873 2086 -626 1 1100 657 151 0 0 chr5 67589629 67589748 -84947511 + (TG)n Simple_repeat Simple_repeat 1 119 0 1 1100 525 241 43 7 chr5 67589946 67590084 -84947175 - B1F SINE Alu -1 148 6 1 1100 789 298 52 75 chr5 67590660 67591079 -84946180 + MTE2a LTR MaLR 1 419 0 1 1100 295 202 28 66 chr5 67591867 67591973 -84945286 - L1ME3A LINE L1 -11 6162 6061 1 1100 232 127 73 37 chr5 67591974 67592056 -84945203 + (TATAA)n Simple_repeat Simple_repeat 4 88 0 1 1100 573 274 119 75 chr5 67592121 67592328 -84944931 - L1ME3A LINE L1 -247 5926 5728 1 1100 1515 159 72 113 chr5 67592328 67592718 -84944541 - ORR1D1 LTR MaLR 0 374 1 1 1100 573 274 119 75 chr5 67592718 67592897 -84944362 - L1ME3A LINE L1 -446 5727 5523 1 1100 236 289 9 96 chr5 67593121 67593236 -84944023 + L1MEd LINE L1 389 493 -5626 1 1100 558 0 0 0 chr5 67597244 67597306 -84939953 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1100 275 49 0 24 chr5 67597419 67597461 -84939798 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 1 1100 245 218 24 71 chr5 67601250 67601334 -84935925 - Lx8 LINE L1 0 7473 7394 1 1100 420 315 54 0 chr5 67601383 67601532 -84935727 - Lx8 LINE L1 -250 7223 7067 1 1100 213 196 0 0 chr5 67601552 67601608 -84935651 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1100 396 40 0 0 chr5 67601682 67601732 -84935527 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1100 477 0 0 0 chr5 67601734 67601787 -84935472 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1100 337 262 48 0 chr5 67601986 67602089 -84935170 + PB1D10 SINE Alu 1 108 -9 1 1100 36 0 0 0 chr5 67602091 67602127 -84935132 + AT_rich Low_complexity Low_complexity 1 36 0 1 1100 372 211 26 0 chr5 67602138 67602214 -84935045 + RSINE1 SINE B4 3 80 -85 1 1100 2035 186 40 10 chr5 67602234 67602635 -84934624 + MTC LTR MaLR 1 413 -8 1 1100 270 179 0 0 chr5 67602662 67602718 -84934541 + (CATA)n Simple_repeat Simple_repeat 4 59 0 1 1100 285 327 27 9 chr5 67603098 67603209 -84934050 + PB1D10 SINE Alu 4 116 -1 1 1100 684 266 10 24 chr5 67603213 67603421 -84933838 + ID_B1 SINE B4 3 207 -17 1 1100 236 231 0 55 chr5 67603669 67603724 -84933535 - tRNA-Ala-GCG tRNA tRNA -7 68 17 1 1100 441 0 0 0 chr5 67603973 67604022 -84933237 + (TTGG)n Simple_repeat Simple_repeat 4 52 0 1 1100 284 49 15 76 chr5 67604277 67604343 -84932916 + (TCTCCC)n Simple_repeat Simple_repeat 5 66 0 1 1100 441 0 0 0 chr5 67604344 67604393 -84932866 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1100 753 12 0 0 chr5 67605023 67605109 -84932150 + (GGAA)n Simple_repeat Simple_repeat 1 86 0 1 1100 279 0 0 0 chr5 67606266 67606297 -84930962 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1100 189 0 0 0 chr5 67607315 67607336 -84929923 + (CG)n Simple_repeat Simple_repeat 2 22 0 1 1100 387 0 0 0 chr5 67607336 67607378 -84929881 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1100 522 93 152 20 chr5 67608476 67608575 -84928684 + B1_Mur4 SINE Alu 23 134 -16 2 1100 621 40 0 0 chr5 67608607 67608683 -84928576 + (GA)n Simple_repeat Simple_repeat 1 76 0 2 1100 929 57 8 0 chr5 67608687 67608811 -84928448 + (GAA)n Simple_repeat Simple_repeat 1 125 0 2 1100 216 309 0 0 chr5 67610592 67610647 -84926612 + GA-rich Low_complexity Low_complexity 2 56 0 2 1100 223 203 0 28 chr5 67610978 67611049 -84926210 + CT-rich Low_complexity Low_complexity 4 72 0 2 1100 252 0 0 0 chr5 67611668 67611696 -84925563 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1100 303 130 0 0 chr5 67616163 67616217 -84921042 + (CATA)n Simple_repeat Simple_repeat 2 55 0 2 1100 623 256 25 12 chr5 67616243 67616405 -84920854 + B3A SINE B2 3 166 -32 2 1100 237 33 0 0 chr5 67616405 67616435 -84920824 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1100 30 0 0 0 chr5 67616438 67616468 -84920791 + AT_rich Low_complexity Low_complexity 1 30 0 2 1100 238 158 263 0 chr5 67616649 67616706 -84920553 - PB1D9 SINE Alu -8 112 41 2 1100 276 229 208 0 chr5 67617397 67617493 -84919766 - B1F SINE Alu 0 149 34 2 1100 303 96 0 0 chr5 67617837 67617889 -84919370 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1100 573 15 0 0 chr5 67618229 67618295 -84918964 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1100 215 139 70 0 chr5 67618366 67618409 -84918850 + C-rich Low_complexity Low_complexity 3 48 0 2 1100 230 81 27 0 chr5 67618651 67618688 -84918571 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 1100 261 0 0 0 chr5 67620778 67620807 -84916452 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1100 221 274 0 0 chr5 67621377 67621428 -84915831 + T-rich Low_complexity Low_complexity 4 54 0 2 1100 222 37 0 0 chr5 67621459 67621486 -84915773 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1100 197 0 0 67 chr5 67623688 67623718 -84913541 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1100 180 0 0 0 chr5 67623794 67623814 -84913445 + (CTAG)n Simple_repeat Simple_repeat 4 23 0 2 1100 266 315 0 0 chr5 67624034 67624107 -84913152 - tRNA-Ala-GCY_ tRNA tRNA -2 73 1 2 1100 257 25 0 70 chr5 67624632 67624675 -84912584 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2 1100 497 58 14 0 chr5 67624738 67624807 -84912452 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 2 1100 327 49 0 0 chr5 67625607 67625648 -84911611 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1100 522 0 0 0 chr5 67625681 67625739 -84911520 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1100 279 79 0 0 chr5 67627032 67627070 -84910189 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 2 1100 1440 0 0 37 chr5 67627070 67627257 -84910002 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 2 1100 1113 50 0 0 chr5 67627257 67627397 -84909862 + (GGAAA)n Simple_repeat Simple_repeat 1 140 0 2 1100 1587 165 61 35 chr5 67627635 67627980 -84909279 + ORR1B1 LTR MaLR 41 394 0 2 1100 195 157 0 0 chr5 67628007 67628058 -84909201 + T-rich Low_complexity Low_complexity 1 51 0 2 1100 668 124 0 34 chr5 67628060 67628177 -84909082 - B1_Mus1 SINE Alu 0 148 36 2 1100 1483 73 16 0 chr5 67628190 67628381 -84908878 - B2_Mm2 SINE B2 0 195 2 2 1100 1319 57 96 0 chr5 67628883 67629060 -84908199 - B2_Mm2 SINE B2 -1 194 1 2 1100 1166 49 0 0 chr5 67630745 67630887 -84906372 + B1_Mus1 SINE Alu 1 142 -6 2 1100 618 244 0 15 chr5 67631081 67631218 -84906041 + B1_Mus1 SINE Alu 5 139 -9 2 1100 482 0 0 17 chr5 67631218 67631277 -84905982 + (GGA)n Simple_repeat Simple_repeat 3 60 0 2 1100 280 276 82 0 chr5 67631355 67631453 -84905806 + PB1D7 SINE Alu 13 118 -2 2 1100 1183 54 0 13 chr5 67631911 67632060 -84905199 + B1_Mus1 SINE Alu 2 148 0 2 1100 600 260 13 26 chr5 67632072 67632226 -84905033 + RSINE1 SINE B4 12 163 -2 2 1100 594 113 0 0 chr5 67632281 67632378 -84904881 + (TG)n Simple_repeat Simple_repeat 2 98 0 2 1100 628 252 25 97 chr5 67632429 67632666 -84904593 + ID_B1 SINE B4 3 222 -2 2 1101 189 121 0 0 chr5 67633867 67633900 -84903359 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2 1101 1023 253 9 13 chr5 67633900 67634124 -84903135 - ID_B1 SINE B4 0 224 2 2 1101 1390 99 16 10 chr5 67634153 67634346 -84902913 + B2_Mm2 SINE B2 2 195 0 2 1101 2226 130 42 50 chr5 67634612 67634993 -84902266 + ORR1C1 LTR MaLR 1 378 0 2 1101 883 144 256 6 chr5 67635522 67635690 -84901569 + B3 SINE B2 1 210 -6 2 1101 529 189 130 30 chr5 67635791 67635922 -84901337 + B1_Mur2 SINE Alu 6 149 0 2 1101 399 269 70 51 chr5 67635922 67635948 -84901311 + B4A SINE B4 91 250 -42 2 1101 605 151 0 14 chr5 67635996 67636144 -84901115 + (TCTG)n Simple_repeat Simple_repeat 1 146 0 2 1101 210 71 0 0 chr5 67636503 67636531 -84900728 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1101 1511 201 7 19 chr5 67636534 67636844 -84900415 + MTD LTR MaLR 6 311 -108 2 1101 268 286 14 0 chr5 67637172 67637242 -84900017 + ID4 SINE ID 13 83 0 2 1101 340 190 0 0 chr5 67637897 67637955 -84899304 - B1F1 SINE Alu -86 63 6 2 1101 200 212 169 36 chr5 67638782 67638865 -84898394 + L2c LINE L2 3281 3374 -13 2 1101 492 18 0 0 chr5 67639012 67639069 -84898190 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1101 411 247 172 33 chr5 67639070 67639221 -84898038 - B4A SINE B4 -20 272 101 2 1101 1009 222 166 17 chr5 67639231 67639533 -84897726 + ORR1D2 LTR MaLR 24 370 0 2 1101 24 0 0 0 chr5 67640207 67640231 -84897028 + AT_rich Low_complexity Low_complexity 1 24 0 2 1101 540 316 122 15 chr5 67640348 67640745 -84896514 - MLT1C LTR MaLR -1 466 27 2 1101 470 221 177 0 chr5 67640754 67640867 -84896392 + B1F2 SINE Alu 2 134 -15 2 1101 692 159 0 15 chr5 67640873 67641007 -84896252 + GA-rich Low_complexity Low_complexity 1 132 0 2 1101 242 128 0 0 chr5 67641064 67641103 -84896156 + B2_Mm2 SINE B2 1 39 -156 2 1101 511 243 9 0 chr5 67641392 67641503 -84895756 + PB1D7 SINE Alu 2 113 -7 2 1101 863 66 16 0 chr5 67641589 67641711 -84895548 + (TTTC)n Simple_repeat Simple_repeat 1 124 0 2 1101 844 144 14 0 chr5 67641741 67641880 -84895379 - B1_Mur3 SINE Alu 0 149 9 2 1101 290 333 82 78 chr5 67642108 67642352 -84894907 + MLT1I LTR MaLR 46 290 -121 2 1101 246 227 76 51 chr5 67642673 67642752 -84894507 - ID4 SINE ID -1 82 2 2 1101 287 275 208 0 chr5 67643193 67643342 -84893917 - LTR31 LTR ERV1 -125 494 315 2 1101 702 189 25 6 chr5 67643421 67643576 -84893683 + ORR1C2 LTR MaLR 3 161 -213 2 1101 366 23 0 0 chr5 67643576 67643619 -84893640 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1101 1404 201 110 34 chr5 67643637 67644081 -84893178 + RMER19B LTR ERVK 138 620 -282 2 1101 432 86 0 0 chr5 67644081 67644151 -84893108 + (TC)n Simple_repeat Simple_repeat 2 71 0 2 1101 1082 168 33 14 chr5 67644151 67644363 -84892896 + ORR1C2 LTR MaLR 167 382 -2 2 1101 260 111 0 22 chr5 67644998 67645044 -84892215 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2 1101 392 250 44 9 chr5 67645089 67645202 -84892057 - PB1D10 SINE Alu 0 117 1 2 1101 471 35 0 0 chr5 67645865 67645922 -84891337 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1101 895 176 14 0 chr5 67646040 67646188 -84891071 + B1_Mur4 SINE Alu 1 150 0 2 1101 642 316 77 55 chr5 67646372 67646827 -84890432 + MLT1D LTR MaLR 41 505 0 2 1101 186 40 0 0 chr5 67647439 67647455 -84889804 + (A)n Simple_repeat Simple_repeat 1 16 0 2 1101 1146 88 0 0 chr5 67647455 67647602 -84889657 + B1_Mus2 SINE Alu 1 147 0 2 1101 186 40 0 0 chr5 67647602 67647610 -84889649 + (A)n Simple_repeat Simple_repeat 1 8 0 2 1101 521 288 60 51 chr5 67648095 67648329 -84888930 - Tigger7 DNA MER2_type -19 2472 2237 2 1101 521 211 0 9 chr5 67648366 67648471 -84888788 + PB1D9 SINE Alu 1 104 -16 2 1101 612 40 0 0 chr5 67648481 67648556 -84888703 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 1101 435 135 0 0 chr5 67648556 67648652 -84888607 + (GA)n Simple_repeat Simple_repeat 2 97 0 2 1101 502 269 8 23 chr5 67648818 67648951 -84888308 - ID_B1 SINE B4 0 224 94 2 1101 283 154 19 0 chr5 67649095 67649147 -84888112 + RSINE1 SINE B4 3 55 -110 2 1101 204 40 0 0 chr5 67649576 67649601 -84887658 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1101 332 278 44 0 chr5 67649629 67649719 -84887540 - RSINE1 SINE B4 -15 150 57 2 1101 421 273 44 22 chr5 67650325 67650460 -84886799 + MLT1B LTR MaLR 253 390 0 2 1101 306 50 0 0 chr5 67650475 67650515 -84886744 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1101 28 0 0 0 chr5 67651212 67651240 -84886019 + AT_rich Low_complexity Low_complexity 1 28 0 2 1101 588 197 124 65 chr5 67653440 67653625 -84883634 + B3A SINE B2 2 197 -1 2 1101 382 299 31 0 chr5 67653723 67653850 -84883409 - RSINE1 SINE B4 -32 133 3 2 1101 1041 234 5 0 chr5 67655979 67656188 -84881071 - B3 SINE B2 -5 211 2 2 1101 437 225 171 24 chr5 67656341 67656464 -84880795 + B1F2 SINE Alu 9 149 0 2 1101 252 149 0 21 chr5 67656773 67656821 -84880438 + ID_B1 SINE B4 178 224 0 2 1101 392 268 0 10 chr5 67657196 67657294 -84879965 + PB1D10 SINE Alu 1 97 -20 2 1101 921 167 86 0 chr5 67657494 67657668 -84879591 - B2_Mm2 SINE B2 -5 190 2 2 1101 322 232 44 109 chr5 67658068 67658221 -84879038 + B3 SINE B2 48 194 -4 3 1101 201 94 0 0 chr5 67658934 67658966 -84878293 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 3 1101 554 185 36 29 chr5 67658968 67659107 -84878152 - B1_Mur1 SINE Alu -8 141 2 3 1101 376 291 202 0 chr5 67659469 67659682 -84877577 + MER2 DNA MER2_type 40 295 -50 3 1101 356 333 47 7 chr5 67660323 67660471 -84876788 - Lx8 LINE L1 -123 7350 7197 3 1101 1818 154 117 23 chr5 67660560 67660945 -84876314 - MTC LTR MaLR 0 421 1 3 1101 2358 36 0 79 chr5 67661037 67661365 -84875894 - L1Md_F3 LINE L1 0 6584 6283 3 1101 4487 14 2 0 chr5 67661365 67661857 -84875402 - MT2_Mm LTR ERVL 0 493 1 3 1101 321 0 0 0 chr5 67661857 67661895 -84875364 - MERVL-int LTR ERVL 0 5485 5448 3 1101 362 167 46 35 chr5 67661895 67661982 -84875277 - ORR1A3-int LTR MaLR -1323 640 553 3 1101 48503 14 6 0 chr5 67661982 67667308 -84869951 - MERVL-int LTR ERVL -125 5360 1 3 1101 4694 14 2 0 chr5 67667308 67667800 -84869459 - MT2_Mm LTR ERVL 0 493 1 3 1101 2622 46 5 94 chr5 67667800 67668181 -84869078 - L1Md_F2 LINE L1 -294 6288 5942 3 1101 180 0 0 0 chr5 67668404 67668424 -84868835 + (CTGTG)n Simple_repeat Simple_repeat 2 21 0 3 1101 493 182 33 10 chr5 67669039 67669147 -84868112 + PB1D10 SINE Alu 7 119 -1 3 1101 696 111 0 0 chr5 67669255 67669363 -84867896 + (TTCC)n Simple_repeat Simple_repeat 3 110 0 3 1101 220 292 0 65 chr5 67669363 67669440 -84867819 - ID2 SINE ID -10 73 2 3 1101 269 283 152 11 chr5 67669463 67669574 -84867685 - PB1 SINE Alu -2 125 1 3 1101 722 234 20 7 chr5 67669699 67669845 -84867414 - B1_Mur2 SINE Alu -1 148 1 3 1101 225 65 0 0 chr5 67670203 67670234 -84867025 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1101 1307 41 0 0 chr5 67670234 67670381 -84866878 - B1_Mus2 SINE Alu 0 147 1 3 1101 180 0 0 0 chr5 67670389 67670409 -84866850 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1101 1264 62 0 0 chr5 67670412 67670558 -84866701 - B1_Mm SINE Alu 0 147 2 3 1101 372 94 0 0 chr5 67670615 67670668 -84866591 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1101 516 249 111 24 chr5 67670678 67670873 -84866386 - B4A SINE B4 0 292 3 3 1101 261 282 58 0 chr5 67670891 67670994 -84866265 - L1MA5 LINE L1 -276 6024 5916 3 1101 403 258 38 47 chr5 67671012 67671118 -84866141 - B3 SINE B2 -6 210 106 3 1101 540 297 71 2 chr5 67671133 67671433 -84865826 - L1MA5 LINE L1 -378 5793 5476 3 1101 426 252 58 0 chr5 67671436 67671603 -84865656 - L1MA5 LINE L1 -1507 4636 4448 3 1101 225 217 32 32 chr5 67671908 67671970 -84865289 + CT-rich Low_complexity Low_complexity 5 66 0 3 1101 279 304 37 25 chr5 67671991 67672072 -84865187 - PB1D10 SINE Alu -8 109 28 3 1101 560 73 0 12 chr5 67672224 67672307 -84864952 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 3 1101 1403 75 32 0 chr5 67672310 67672496 -84864763 - B2_Mm2 SINE B2 -2 193 2 3 1101 2195 161 102 19 chr5 67673060 67673530 -84863729 - RMER20A LTR ERVK -7 509 1 3 1101 922 161 28 0 chr5 67673634 67673777 -84863482 - B1_Mur2 SINE Alu -2 147 1 3 1101 449 234 156 0 chr5 67673807 67673935 -84863324 - RSINE1 SINE B4 -8 157 10 3 1101 435 280 134 16 chr5 67673984 67674111 -84863148 - ID_B1 SINE B4 -1 223 82 3 1101 650 136 29 0 chr5 67674560 67674663 -84862596 + B1_Mur4 SINE Alu 2 107 -43 3 1101 239 191 0 41 chr5 67674767 67674816 -84862443 + PB1 SINE Alu 81 127 0 3 1101 292 234 54 161 chr5 67674841 67674953 -84862306 + RSINE1 SINE B4 33 132 -33 3 1101 1771 26 0 0 chr5 67675535 67675727 -84861532 - B2_Mm1t SINE B2 0 193 2 3 1101 352 327 58 13 chr5 67675930 67676085 -84861174 - Tigger5 DNA MER2_type -2224 182 21 3 1101 961 158 14 7 chr5 67677080 67677227 -84860032 - B1_Mur2 SINE Alu -1 148 1 3 1101 361 305 78 21 chr5 67679107 67679298 -84857961 - L1MD3 LINE L1 -18 7977 7776 3 1101 187 281 64 53 chr5 67680248 67680342 -84856917 - L2 LINE L2 -1776 1643 1549 3 1101 253 179 268 0 chr5 67680616 67680672 -84856587 - ID4_ SINE ID -9 74 4 3 1101 261 118 0 0 chr5 67681593 67681644 -84855615 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 3 1101 245 167 167 0 chr5 67681647 67681707 -84855552 - PB1D9 SINE Alu -11 109 40 3 1101 25 31 0 0 chr5 67682137 67682169 -84855090 + AT_rich Low_complexity Low_complexity 1 32 0 3 1101 738 141 149 10 chr5 67683182 67683342 -84853917 + B2_Mm2 SINE B2 1 211 -5 3 1101 231 307 24 107 chr5 67683572 67683656 -84853603 + ID4 SINE ID 1 77 -6 3 1101 1029 212 29 19 chr5 67683701 67683908 -84853351 - B3 SINE B2 -7 209 1 3 1101 306 50 0 0 chr5 67684032 67684072 -84853187 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 3 1101 750 218 0 22 chr5 67684076 67684212 -84853047 - B1_Mur2 SINE Alu -16 133 1 3 1101 530 295 188 16 chr5 67684330 67684575 -84852684 + B4A SINE B4 3 289 -3 3 1101 1609 212 114 21 chr5 67684837 67685213 -84852046 + MTD LTR MaLR 1 411 -8 3 1101 3367 216 236 37 chr5 67685217 67686266 -84850993 + MTD-int LTR MaLR 1 1258 0 3 1101 1313 209 50 139 chr5 67686266 67686726 -84850533 + MTD LTR MaLR 1 419 0 3 1101 376 277 48 119 chr5 67686984 67687152 -84850107 - RSINE1 SINE B4 0 165 10 3 1101 371 308 16 33 chr5 67687293 67687414 -84849845 + PB1D7 SINE Alu 2 120 0 3 1101 643 263 157 48 chr5 67687560 67687808 -84849451 + B4A SINE B4 1 275 -17 3 1101 278 239 87 29 chr5 67687883 67687952 -84849307 + ID4_ SINE ID 2 74 -9 3 1101 552 252 140 1 chr5 67688039 67688175 -84849084 + ID_B1 SINE B4 69 220 -72 3 1101 258 261 42 42 chr5 67688446 67688518 -84848741 + ID4 SINE ID 1 72 -11 3 1101 195 42 0 0 chr5 67689170 67689194 -84848065 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1101 699 69 0 0 chr5 67689657 67689759 -84847500 + (TC)n Simple_repeat Simple_repeat 1 102 0 3 1101 378 0 0 0 chr5 67689759 67689800 -84847459 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1101 465 230 62 35 chr5 67689839 67689983 -84847276 + B4A SINE B4 2 149 -143 3 1101 246 62 0 0 chr5 67690095 67690127 -84847132 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1101 336 245 32 0 chr5 67690234 67690328 -84846931 - MER33 DNA MER1_type -6 318 222 3 1101 225 303 65 13 chr5 67690949 67691026 -84846233 - MLT1C LTR MaLR -6 461 381 3 1101 249 83 0 0 chr5 67691061 67691097 -84846162 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 3 1101 496 337 118 12 chr5 67691246 67691501 -84845758 - B4A SINE B4 -3 289 8 3 1101 194 356 128 14 chr5 67691659 67691870 -84845389 + L2 LINE L2 2612 2846 -573 3 1101 477 0 0 0 chr5 67692832 67692885 -84844374 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3 1101 1250 48 0 7 chr5 67692885 67693031 -84844228 - B1_Mus2 SINE Alu -2 145 1 3 1101 261 0 0 0 chr5 67693031 67693060 -84844199 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1101 240 218 36 18 chr5 67693175 67693231 -84844028 + B1F SINE Alu 27 83 -66 3 1101 282 125 0 0 chr5 67693661 67693709 -84843550 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1101 1286 34 7 0 chr5 67693712 67693859 -84843400 - B1_Mus1 SINE Alu 0 148 1 3 1101 396 304 0 67 chr5 67694122 67694274 -84842985 + RSINE1 SINE B4 3 148 -17 3 1101 447 271 31 68 chr5 67694326 67694488 -84842771 + RSINE1 SINE B4 2 157 -8 3 1101 292 231 77 0 chr5 67694531 67694596 -84842663 + B4A SINE B4 223 292 0 3 1101 333 260 9 74 chr5 67695492 67695600 -84841659 + ID_B1 SINE B4 121 221 -3 3 1101 1682 283 57 32 chr5 67695864 67696230 -84841029 - Lx8 LINE L1 -241 7232 6851 3 1101 189 0 0 0 chr5 67696230 67696251 -84841008 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 3 1101 1682 283 57 32 chr5 67696251 67696334 -84840925 - Lx8 LINE L1 -623 6850 6770 3 1101 4014 108 114 39 chr5 67696334 67696486 -84840773 - RLTR19B LTR ERVK 0 715 551 3 1101 192 40 0 0 chr5 67696486 67696511 -84840748 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1101 1175 68 0 7 chr5 67696518 67696653 -84840606 + B1_Mus2 SINE Alu 2 136 -11 3 1101 243 0 0 0 chr5 67696653 67696680 -84840579 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1101 1175 68 0 7 chr5 67696680 67696691 -84840568 + B1_Mus2 SINE Alu 137 147 0 3 1101 4014 108 114 39 chr5 67696691 67697195 -84840064 - RLTR19B LTR ERVK -165 550 1 3 1101 1682 283 57 32 chr5 67697195 67697339 -84839920 - Lx8 LINE L1 -704 6769 6624 3 1101 575 67 0 0 chr5 67697370 67697445 -84839814 - L1_Mus1 LINE L1 0 6567 6493 3 1101 758 207 82 0 chr5 67700054 67700189 -84837070 + B1_Mus2 SINE Alu 2 147 0 3 1101 251 291 154 0 chr5 67700367 67700477 -84836782 - MER33 DNA MER1_type -144 180 54 3 1101 294 278 10 72 chr5 67700668 67700765 -84836494 - B3A SINE B2 -11 187 97 3 1101 368 309 11 0 chr5 67701090 67701184 -84836075 - PB1D10 SINE Alu 0 117 23 3 1101 1130 186 67 0 chr5 67701547 67701740 -84835519 - B3 SINE B2 -10 206 1 3 1101 1355 98 43 0 chr5 67701750 67701934 -84835325 - B2_Mm2 SINE B2 -1 194 3 3 1101 981 149 14 0 chr5 67702010 67702151 -84835108 - B1_Mm SINE Alu -3 144 2 3 1101 23 68 0 0 chr5 67702162 67702206 -84835053 + AT_rich Low_complexity Low_complexity 1 44 0 3 1101 1393 249 44 47 chr5 67702354 67702762 -84834497 - Lx6 LINE L1 -27 7433 7027 3 1101 333 267 32 116 chr5 67703653 67703869 -84833390 + L1MC5 LINE L1 6849 7046 -915 3 1101 225 304 10 71 chr5 67704515 67704614 -84832645 - RSINE1 SINE B4 0 165 73 3 1101 234 0 0 0 chr5 67704630 67704656 -84832603 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 3 1101 786 194 22 0 chr5 67704924 67705063 -84832196 - B1_Mur1 SINE Alu -7 142 1 3 1101 1543 65 43 0 chr5 67705108 67705294 -84831965 - B2_Mm2 SINE B2 0 195 2 3 1101 1288 93 10 47 chr5 67706081 67706273 -84830986 + B2_Mm2 SINE B2 2 186 -9 3 1101 711 209 54 43 chr5 67706360 67706545 -84830714 - B2_Mm2 SINE B2 -8 187 1 3 1101 237 256 183 0 chr5 67707228 67707310 -84829949 + B4 SINE B4 194 290 -2 3 1101 303 290 61 8 chr5 67707729 67707861 -84829398 - L1MEe LINE L1 -4216 638 500 3 1101 200 217 0 0 chr5 67707887 67707933 -84829326 + T-rich Low_complexity Low_complexity 1 46 0 4 1101 381 93 0 0 chr5 67707950 67708004 -84829255 + (CAT)n Simple_repeat Simple_repeat 1 54 0 4 1101 410 269 113 33 chr5 67708006 67708156 -84829103 - RSINE1 SINE B4 0 165 4 4 1101 264 224 35 116 chr5 67708212 67708298 -84828961 - PB1D9 SINE Alu -5 115 37 4 1101 352 237 36 60 chr5 67708517 67708683 -84828576 + RMER17A2 LTR ERVK 251 412 -494 4 1101 231 278 0 69 chr5 67708684 67708742 -84828517 - ID4 SINE ID -23 60 7 4 1101 317 250 12 12 chr5 67708880 67708961 -84828298 + B4 SINE B4 3 83 -209 4 1101 197 320 103 65 chr5 67709241 67709297 -84827962 + L2 LINE L2 2693 2740 -679 4 1101 1667 183 106 34 chr5 67709297 67709654 -84827605 - ORR1C2 LTR MaLR -1 383 1 4 1101 197 320 103 65 chr5 67709654 67709781 -84827478 + L2 LINE L2 2741 2883 -536 4 1101 952 224 232 107 chr5 67709825 67710235 -84827024 + MT2A LTR ERVL 1 461 -72 4 1101 227 346 0 0 chr5 67710232 67710284 -84826975 + RSINE1 SINE B4 114 165 0 4 1101 1490 85 32 0 chr5 67710591 67710780 -84826479 - B2_Mm2 SINE B2 0 195 1 4 1101 286 234 14 29 chr5 67711437 67711511 -84825748 + PB1D7 SINE Alu 45 120 0 4 1101 555 287 144 52 chr5 67711616 67711866 -84825393 + B4A SINE B4 2 274 -18 4 1101 848 163 57 0 chr5 67712069 67712210 -84825049 + B1_Mur2 SINE Alu 1 149 0 4 1101 294 253 111 20 chr5 67713557 67713701 -84823558 + MIR SINE MIR 78 235 -33 4 1101 189 0 0 0 chr5 67713927 67713948 -84823311 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1101 542 214 100 65 chr5 67713966 67714136 -84823123 + B3A SINE B2 17 192 -6 4 1101 303 230 78 20 chr5 67714188 67714290 -84822969 - L1ME3B LINE L1 -284 5956 5849 4 1101 1179 69 21 0 chr5 67714934 67715078 -84822181 + B1_Mus2 SINE Alu 1 147 0 4 1101 207 0 0 0 chr5 67715170 67715193 -84822066 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1101 226 312 0 0 chr5 67715659 67715736 -84821523 - L1M5 LINE L1 -2206 3940 3864 4 1101 372 306 45 50 chr5 67716317 67716496 -84820763 + MIRb SINE MIR 13 190 -78 4 1101 1158 95 0 7 chr5 67717370 67717518 -84819741 + B1_Mm SINE Alu 1 147 0 4 1101 413 278 50 57 chr5 67718431 67718572 -84818687 - RSINE1 SINE B4 -1 164 25 4 1101 241 217 129 14 chr5 67718684 67718754 -84818505 - 5S rRNA rRNA -34 87 10 4 1101 374 119 183 0 chr5 67719099 67719206 -84818053 - B2_Mm2 SINE B2 -1 194 47 4 1101 1357 107 11 0 chr5 67719257 67719434 -84817825 - B2_Mm1t SINE B2 -14 179 1 4 1101 191 133 0 22 chr5 67720076 67720122 -84817137 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 4 1101 21 0 0 0 chr5 67720257 67720278 -84816981 + AT_rich Low_complexity Low_complexity 1 21 0 4 1101 536 294 60 69 chr5 67720481 67720697 -84816562 - B3A SINE B2 -2 214 1 4 1101 785 290 70 5 chr5 67720844 67721031 -84816228 - ID_B1 SINE B4 -16 208 10 4 1101 252 0 0 0 chr5 67721456 67721484 -84815775 + (TC)n Simple_repeat Simple_repeat 1 28 0 4 1101 369 0 0 0 chr5 67721484 67721524 -84815735 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1101 586 300 119 12 chr5 67721907 67722160 -84815099 + Tigger5 DNA MER2_type 2127 2406 0 4 1101 281 360 9 0 chr5 67722563 67722674 -84814585 + PB1D7 SINE Alu 1 112 -8 4 1101 198 0 0 0 chr5 67723351 67723373 -84813886 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1101 295 116 76 65 chr5 67723373 67723465 -84813794 - IAPLTR1_Mm LTR ERVK -52 315 223 4 1101 283 211 0 21 chr5 67723468 67723565 -84813694 + GA-rich Low_complexity Low_complexity 2 96 0 4 1101 231 36 0 0 chr5 67723646 67723674 -84813585 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 4 1101 431 252 108 0 chr5 67723675 67723786 -84813473 - RSINE1 SINE B4 -6 159 37 4 1101 580 229 4 143 chr5 67723898 67724128 -84813131 - B3A SINE B2 0 198 1 4 1101 1376 75 21 11 chr5 67724847 67725036 -84812223 - B2_Mm1a SINE B2 -2 191 1 4 1101 275 309 21 35 chr5 67725476 67725617 -84811642 - L2 LINE L2 -1025 2394 2256 4 1101 347 252 75 103 chr5 67726096 67726125 -84811134 + B4 SINE B4 77 218 -74 4 1101 562 188 0 43 chr5 67726125 67726242 -84811017 + B1_Mur4 SINE Alu 31 142 -8 4 1101 711 193 228 0 chr5 67726324 67726495 -84810764 - B3 SINE B2 -6 210 1 4 1101 634 182 103 0 chr5 67726655 67726781 -84810478 + B1_Mur2 SINE Alu 3 141 -8 4 1101 205 138 0 0 chr5 67726784 67726813 -84810446 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 4 1101 291 167 52 0 chr5 67726919 67726984 -84810275 - B3 SINE B2 -98 100 31 4 1101 620 169 76 8 chr5 67727030 67727149 -84810110 - B3 SINE B2 -89 127 1 4 1101 452 226 26 0 chr5 67727167 67727285 -84809974 - B1_Mur4 SINE Alu -18 132 1 4 1101 249 325 8 0 chr5 67727647 67727763 -84809496 + ID2 SINE ID 12 129 -23 4 1101 748 275 86 41 chr5 67727923 67728192 -84809067 - B4A SINE B4 0 292 12 4 1101 23 33 0 0 chr5 67728327 67728357 -84808902 + AT_rich Low_complexity Low_complexity 1 30 0 4 1101 2015 174 93 3 chr5 67728399 67728785 -84808474 - MTC LTR MaLR 0 421 1 4 1101 186 43 0 0 chr5 67729166 67729189 -84808070 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1101 228 268 108 26 chr5 67729622 67729817 -84807442 + L1MEf LINE L1 911 1121 -5121 4 1101 1688 36 0 0 chr5 67729840 67730032 -84807227 - B2_Mm1a SINE B2 0 193 2 4 1101 348 327 92 4 chr5 67730042 67730303 -84806956 + L1MEf LINE L1 3559 3842 -2304 4 1101 273 275 133 55 chr5 67730295 67730476 -84806783 + L1MEf LINE L1 4305 4499 -1647 4 1101 366 275 27 18 chr5 67730869 67730980 -84806279 - PB1D10 SINE Alu -5 112 1 4 1101 192 163 0 0 chr5 67731860 67731903 -84805356 + (TAA)n Simple_repeat Simple_repeat 1 43 0 4 1101 189 0 0 0 chr5 67732594 67732615 -84804644 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 4 1101 910 205 26 0 chr5 67733657 67733847 -84803412 - B3 SINE B2 -7 209 15 4 1101 258 279 17 96 chr5 67734930 67735045 -84802214 - PB1D10 SINE Alu -10 107 2 4 1101 21 89 0 0 chr5 67735386 67735442 -84801817 + AT_rich Low_complexity Low_complexity 1 56 0 4 1101 907 145 7 0 chr5 67735463 67735601 -84801658 - B1_Mus2 SINE Alu -8 139 1 4 1101 336 295 64 91 chr5 67736274 67736494 -84800765 - B3 SINE B2 -2 214 1 4 1101 267 260 55 0 chr5 67737608 67737681 -84799578 + L1MA4 LINE L1 5848 5924 -376 4 1101 261 0 0 0 chr5 67737715 67737744 -84799515 + (TTG)n Simple_repeat Simple_repeat 1 29 0 4 1101 412 173 0 16 chr5 67738536 67738631 -84798628 - B1_Mur3 SINE Alu -8 112 21 4 1101 371 320 82 57 chr5 67738669 67738828 -84798431 + RSINE1 SINE B4 3 165 0 4 1101 611 248 22 14 chr5 67738862 67739001 -84798258 - B1_Mur1 SINE Alu -5 144 5 4 1101 216 111 0 0 chr5 67739355 67739391 -84797868 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1101 373 268 55 31 chr5 67739635 67739762 -84797497 - MLT1A1 LTR MaLR -1 407 278 4 1101 186 250 21 0 chr5 67740331 67740379 -84796880 + MIRc SINE MIR 61 109 -159 4 1101 244 221 132 9 chr5 67741728 67741842 -84795417 + Tigger7 DNA MER2_type 2272 2399 -92 4 1101 819 179 220 0 chr5 67741843 67742016 -84795243 + B3 SINE B2 1 211 -5 4 1101 603 0 0 0 chr5 67742033 67742100 -84795159 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1101 460 253 77 0 chr5 67742378 67742548 -84794711 - ID_B1 SINE B4 -1 223 41 4 1101 325 286 112 0 chr5 67743058 67743156 -84794103 + PB1D10 SINE Alu 1 109 -8 4 1101 446 155 10 40 chr5 67743400 67743501 -84793758 - B1_Mur1 SINE Alu -15 134 37 4 1101 895 130 0 46 chr5 67744271 67744424 -84792835 + B1_Mur4 SINE Alu 5 150 0 4 1101 862 256 28 19 chr5 67744607 67744818 -84792441 - B3 SINE B2 -1 215 3 4 1101 256 232 59 35 chr5 67744866 67744951 -84792308 - Charlie1a DNA MER1_type -290 1165 1079 4 1101 398 194 0 0 chr5 67745092 67745164 -84792095 + B1_Mur2 SINE Alu 77 148 -1 4 1101 256 191 0 50 chr5 67747121 67747194 -84790065 - B1F SINE Alu -5 142 77 4 1101 381 252 19 39 chr5 67747212 67747315 -84789944 + RSINE1 SINE B4 2 102 -63 4 1101 764 101 8 0 chr5 67748439 67748558 -84788701 + B1_Mur4 SINE Alu 18 137 -13 4 1101 325 232 27 103 chr5 67748817 67748965 -84788294 - B4A SINE B4 -153 139 4 4 1101 352 215 159 40 chr5 67750085 67750211 -84787048 + B3 SINE B2 71 211 -5 4 1101 1431 189 114 17 chr5 67750582 67750932 -84786327 - ORR1C2 LTR MaLR 0 384 1 4 1101 688 274 103 33 chr5 67751013 67751285 -84785974 - B4A SINE B4 0 292 2 4 1101 907 208 77 15 chr5 67751872 67752067 -84785192 + B3 SINE B2 1 207 -9 4 1101 251 314 103 82 chr5 67752193 67752339 -84784920 - B4A SINE B4 -141 151 3 4 1101 306 331 69 0 chr5 67753345 67753475 -84783784 + L1M5 LINE L1 5508 5646 -478 4 1101 270 310 99 155 chr5 67753482 67753856 -84783403 + ORR1E LTR MaLR 1 353 -6 4 1101 1237 14 0 0 chr5 67753867 67754005 -84783254 + B1_Mm SINE Alu 1 138 -9 4 1101 221 0 0 33 chr5 67754005 67754035 -84783224 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1101 636 307 107 13 chr5 67754114 67754424 -84782835 + Tigger7 DNA MER2_type 2 340 -2151 4 1101 252 256 152 22 chr5 67754441 67754533 -84782726 + PB1D7 SINE Alu 10 113 -7 4 1101 253 306 0 0 chr5 67754583 67754655 -84782604 - ID4 SINE ID -2 81 10 5 1101 277 248 136 0 chr5 67754707 67754811 -84782448 - Lx9 LINE L1 -1 7643 7523 5 1101 423 0 0 0 chr5 67754811 67754858 -84782401 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1101 1621 233 61 3 chr5 67754858 67755237 -84782022 - Lx9 LINE L1 -167 7477 7077 5 1101 1871 175 12 9 chr5 67755240 67755580 -84781679 + Lx9 LINE L1 6603 6943 -701 5 1101 235 312 17 76 chr5 67755580 67755698 -84781561 - PB1D7 SINE Alu 0 120 10 5 1101 496 325 30 0 chr5 67756260 67756429 -84780830 + B3A SINE B2 9 182 -16 5 1101 729 176 175 11 chr5 67756904 67757093 -84780166 + URR1A DNA MER1_type 7 226 0 5 1101 267 286 73 18 chr5 67758900 67759064 -84778195 - MARNA DNA Mariner -217 369 197 5 1101 713 214 0 0 chr5 67759126 67759257 -84778002 + RSINE1 SINE B4 14 144 -21 5 1101 832 271 33 0 chr5 67759449 67759663 -84777596 + ID_B1 SINE B4 2 222 -2 5 1101 575 210 0 0 chr5 67759675 67759794 -84777465 + B1_Mur4 SINE Alu 12 130 -20 5 1101 303 252 141 0 chr5 67759838 67759937 -84777322 + L1M5 LINE L1 2137 2249 -3897 5 1101 260 146 330 18 chr5 67759957 67759977 -84777282 + B1F2 SINE Alu 1 136 -13 5 1101 330 209 54 11 chr5 67759977 67760058 -84777201 + ID_B1 SINE B4 127 211 -13 5 1101 351 0 0 0 chr5 67760058 67760097 -84777162 + (CAAAC)n Simple_repeat Simple_repeat 1 39 0 5 1101 253 0 54 0 chr5 67760122 67760159 -84777100 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1101 941 132 63 42 chr5 67760166 67760356 -84776903 + B2_Mm2 SINE B2 1 194 -1 5 1101 656 319 109 5 chr5 67760495 67760880 -84776379 + L1MD LINE L1 2404 2828 -3318 5 1101 366 23 0 0 chr5 67761030 67761073 -84776186 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1101 411 218 0 0 chr5 67761087 67761188 -84776071 + CT-rich Low_complexity Low_complexity 4 104 0 5 1101 995 308 99 21 chr5 67761331 67761895 -84775364 - L1MC1 LINE L1 -265 6068 5461 5 1101 809 259 4 22 chr5 67761911 67762136 -84775123 - ID_B1 SINE B4 -1 223 3 5 1101 749 272 184 8 chr5 67762153 67762573 -84774686 - L1MC1 LINE L1 -791 5355 4861 5 1101 246 274 11 35 chr5 67762554 67762641 -84774618 - L1M2 LINE L1 -1342 4801 4717 5 1101 2458 201 63 50 chr5 67762649 67763164 -84774095 + Lx7 LINE L1 6227 6756 -940 5 1101 1383 138 36 9 chr5 67763164 67763383 -84773876 - URR1B DNA MER1_type 0 225 1 5 1101 2458 201 63 50 chr5 67763383 67763406 -84773853 + Lx7 LINE L1 6757 6772 -924 5 137 12229 20 0 0 chr5 67763413 67765482 -84771777 - L1Md_T LINE L1 0 6582 4513 5 1102 402 268 10 10 chr5 67765480 67765578 -84771681 + Lx7 LINE L1 6763 6860 -836 5 1102 222 62 0 0 chr5 67765629 67765661 -84771598 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 5 1102 630 216 12 54 chr5 67765834 67766000 -84771259 - B3A SINE B2 0 198 40 5 1102 251 271 11 34 chr5 67766123 67766211 -84771048 + C-rich Low_complexity Low_complexity 4 89 0 5 1102 333 0 0 0 chr5 67766678 67766715 -84770544 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1102 879 71 167 0 chr5 67767014 67767140 -84770119 - B1_Mus1 SINE Alu 0 148 2 5 1102 1212 49 37 0 chr5 67767415 67767578 -84769681 - B2_Mm2 SINE B2 -23 172 4 5 1102 4019 18 0 0 chr5 67767731 67768181 -84769078 - L1Md_A LINE L1 0 6582 6133 5 1102 32 26 0 0 chr5 67769068 67769107 -84768152 + AT_rich Low_complexity Low_complexity 1 39 0 5 1102 923 112 0 0 chr5 67769108 67769242 -84768017 - B2_Mm2 SINE B2 -60 135 2 5 1102 28 0 0 0 chr5 67769242 67769270 -84767989 + AT_rich Low_complexity Low_complexity 1 28 0 5 1102 336 251 5 72 chr5 67769738 67769931 -84767328 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1102 204 272 11 60 chr5 67769907 67770091 -84767168 + (CAGA)n Simple_repeat Simple_repeat 4 178 0 5 1102 488 288 11 0 chr5 67770064 67770241 -84767018 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1102 309 297 8 23 chr5 67770198 67770329 -84766930 + (CATATA)n Simple_repeat Simple_repeat 2 130 0 5 1102 319 233 6 23 chr5 67770354 67770530 -84766729 + (CA)n Simple_repeat Simple_repeat 2 174 0 5 1102 745 261 19 0 chr5 67770791 67771002 -84766257 - ID_B1 SINE B4 -8 216 2 5 1102 1239 52 6 11 chr5 67771016 67771190 -84766069 + (TTC)n Simple_repeat Simple_repeat 2 174 0 5 1102 1212 55 0 7 chr5 67771192 67771339 -84765920 - B1_Mus2 SINE Alu 0 147 2 5 1102 348 83 0 0 chr5 67771464 67771512 -84765747 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1102 240 35 0 0 chr5 67771512 67771540 -84765719 + (GA)n Simple_repeat Simple_repeat 1 29 0 5 1102 807 224 39 19 chr5 67771782 67771987 -84765272 - B4 SINE B4 0 292 84 5 1102 450 232 62 33 chr5 67771995 67772184 -84765075 - B3A SINE B2 0 216 23 5 1102 289 280 13 39 chr5 67772305 67772383 -84764876 - B1F SINE Alu -52 97 22 5 1102 703 216 0 93 chr5 67772819 67773023 -84764236 - B3A SINE B2 -9 189 5 5 1102 676 116 67 0 chr5 67773304 67773460 -84763799 - B2_Mm2 SINE B2 -8 185 2 5 1102 380 293 69 0 chr5 67775201 67775375 -84761884 - L1M4 LINE L1 -1676 4470 4285 5 1102 39183 5 0 0 chr5 67775521 67781101 -84756158 + L1Md_A LINE L1 7 5586 -297 5 1102 9182 4 0 0 chr5 67781101 67782097 -84755162 + L1Md_A LINE L1 5587 6582 0 5 1102 393 287 0 50 chr5 67782520 67782641 -84754618 - RSINE1 SINE B4 -45 120 6 5 1102 1300 98 33 0 chr5 67782760 67782944 -84754315 + B2_Mm1a SINE B2 2 191 -2 5 1102 685 301 45 42 chr5 67783023 67783311 -84753948 + B4A SINE B4 4 292 0 5 1102 477 97 0 0 chr5 67785112 67785184 -84752075 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1102 225 0 0 0 chr5 67785597 67785622 -84751637 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1102 198 0 0 0 chr5 67787945 67787967 -84749292 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1102 269 219 200 27 chr5 67789949 67790024 -84747235 - B4A SINE B4 -200 92 5 5 1102 35 0 0 0 chr5 67791171 67791206 -84746053 + AT_rich Low_complexity Low_complexity 1 35 0 5 1102 189 0 0 0 chr5 67792067 67792088 -84745171 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1102 510 219 105 0 chr5 67793349 67793454 -84743805 + B3 SINE B2 1 116 -100 5 1102 323 202 13 0 chr5 67793484 67793563 -84743696 + (TATG)n Simple_repeat Simple_repeat 1 80 0 5 1102 242 0 0 57 chr5 67793564 67793599 -84743660 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1102 433 311 0 0 chr5 67793691 67793810 -84743449 + B1F SINE Alu 23 141 -8 5 1102 331 259 59 0 chr5 67793893 67793978 -84743281 + B3 SINE B2 127 216 0 5 1102 596 266 22 142 chr5 67794672 67794739 -84742520 - B4A SINE B4 -5 287 127 5 1102 892 128 0 54 chr5 67794739 67794888 -84742371 - B1_Mur2 SINE Alu 0 149 9 5 1102 596 266 22 142 chr5 67794888 67794904 -84742355 - B4A SINE B4 -5 126 84 5 1102 729 236 74 61 chr5 67794901 67795131 -84742128 - B4A SINE B4 -59 233 1 5 1102 326 234 9 0 chr5 67795705 67795812 -84741447 + GA-rich Low_complexity Low_complexity 2 109 0 5 1102 654 224 73 47 chr5 67796801 67797035 -84740224 + Lx7 LINE L1 7173 7412 -284 5 1102 288 173 120 0 chr5 67797090 67797165 -84740094 + Lx7 LINE L1 7613 7696 0 5 1102 974 136 7 26 chr5 67797170 67797321 -84739938 + B1_Mus1 SINE Alu 1 148 0 5 1102 277 250 28 0 chr5 67797482 67797554 -84739705 + PB1D10 SINE Alu 31 104 -13 5 1102 579 229 179 0 chr5 67798585 67798725 -84738534 + B3A SINE B2 1 165 -33 5 1102 305 311 38 28 chr5 67799442 67799568 -84737691 + B1F2 SINE Alu 3 130 -18 5 1102 460 263 56 35 chr5 67799804 67799946 -84737313 + MIRb SINE MIR 68 212 -56 5 1102 387 278 2 11 chr5 67800143 67800255 -84737004 - PB1D10 SINE Alu -41 106 1 5 1102 398 261 65 43 chr5 67800894 67800929 -84736330 + ID SINE ID 48 81 -143 5 1102 386 273 0 91 chr5 67800929 67801050 -84736209 + PB1D10 SINE Alu 2 111 -6 5 1102 339 267 47 56 chr5 67801196 67801303 -84735956 - PB1D10 SINE Alu 0 117 12 5 1102 945 194 71 10 chr5 67801343 67801541 -84735718 - B3 SINE B2 -6 210 1 5 1102 677 268 174 7 chr5 67801833 67802108 -84735151 - MER82 DNA MER2_type -1 652 332 5 1102 277 109 22 0 chr5 67802386 67802432 -84734827 - B3A SINE B2 -151 47 1 5 1102 207 0 0 0 chr5 67802447 67802470 -84734789 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1102 1241 48 0 0 chr5 67802544 67802691 -84734568 + B1_Mus2 SINE Alu 1 147 0 5 1102 371 237 35 18 chr5 67802764 67802925 -84734334 + B4 SINE B4 16 209 -83 5 1102 373 283 94 2 chr5 67803054 67803255 -84734004 + L1M2 LINE L1 5476 5704 -596 5 1102 874 204 39 0 chr5 67803423 67803604 -84733655 - B3 SINE B2 -27 189 2 5 1102 186 43 0 0 chr5 67803635 67803658 -84733601 + (CAAAT)n Simple_repeat Simple_repeat 2 24 0 5 1102 840 203 0 0 chr5 67803680 67803823 -84733436 + B1_Mur1 SINE Alu 1 143 -6 5 1102 324 321 113 36 chr5 67803919 67804113 -84733146 + ID_B1 SINE B4 15 223 -1 5 1102 3043 57 5 3 chr5 67804184 67804569 -84732690 + L1_Mus1 LINE L1 6181 6566 -1 5 1102 946 141 54 43 chr5 67804830 67805015 -84732244 - B2_Mm2 SINE B2 -7 188 2 5 1102 180 0 0 0 chr5 67805056 67805076 -84732183 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1102 444 282 57 0 chr5 67805984 67806108 -84731151 - ID_B1 SINE B4 -14 210 80 5 1102 615 27 0 0 chr5 67807002 67807075 -84730184 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1102 614 233 30 0 chr5 67807075 67807208 -84730051 - ID_B1 SINE B4 -10 214 78 5 1102 770 166 211 28 chr5 67807623 67807803 -84729456 - B3 SINE B2 -3 213 1 5 1102 1203 28 0 27 chr5 67807860 67808009 -84729250 + B1_Mm SINE Alu 2 146 -1 5 1102 186 43 0 0 chr5 67808011 67808034 -84729225 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 5 1102 255 329 25 12 chr5 67809467 67809547 -84727712 - MamSINE1 SINE tRNA -209 81 1 6 1102 3509 127 112 26 chr5 67810046 67810707 -84726552 + RMER6A LTR ERVK 5 722 -34 6 1102 410 245 10 21 chr5 67811180 67811276 -84725983 + PB1 SINE Alu 28 122 -5 6 1102 491 257 222 36 chr5 67811635 67811788 -84725471 + B4A SINE B4 2 163 -129 6 1102 213 65 0 0 chr5 67811788 67811819 -84725440 + (CAGC)n Simple_repeat Simple_repeat 3 33 0 6 1102 491 257 222 36 chr5 67811819 67811858 -84725401 + B4A SINE B4 164 229 -63 6 1102 765 296 13 30 chr5 67811858 67812088 -84725171 + B4A SINE B4 3 228 -64 6 1102 447 253 216 43 chr5 67812106 67812337 -84724922 + Lx8 LINE L1 7161 7431 -42 6 1102 329 146 55 0 chr5 67812388 67812443 -84724816 + B4A SINE B4 216 273 -19 6 1102 284 231 0 74 chr5 67812753 67812857 -84724402 - B4 SINE B4 -200 92 5 6 1102 450 195 0 56 chr5 67813110 67813379 -84723880 + (ATG)n Simple_repeat Simple_repeat 1 253 0 6 1102 21 57 0 0 chr5 67814357 67814392 -84722867 + AT_rich Low_complexity Low_complexity 1 35 0 6 1102 225 94 0 0 chr5 67816402 67816434 -84720825 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1102 334 368 52 72 chr5 67816827 67817117 -84720142 + HAL1b LINE L1 300 583 -1426 6 1102 243 250 97 11 chr5 67817165 67817258 -84720001 - ORR1A1-int LTR MaLR -568 1224 1124 6 1102 234 162 13 26 chr5 67818385 67818461 -84718798 + (CGG)n Simple_repeat Simple_repeat 1 75 0 6 1102 216 212 58 23 chr5 67818498 67818585 -84718674 + (CGG)n Simple_repeat Simple_repeat 2 91 0 6 1102 252 100 0 0 chr5 67818624 67818664 -84718595 + (CGG)n Simple_repeat Simple_repeat 2 41 0 6 1102 213 114 0 28 chr5 67818923 67818959 -84718300 + (CCG)n Simple_repeat Simple_repeat 1 35 0 6 1102 31 26 0 0 chr5 67819089 67819127 -84718132 + GC_rich Low_complexity Low_complexity 1 38 0 6 1102 246 336 59 25 chr5 67819575 67819694 -84717565 - MIRc SINE MIR -46 222 100 6 1102 634 162 201 0 chr5 67821058 67821229 -84716030 - B3 SINE B2 0 216 2 6 1102 321 286 30 67 chr5 67821395 67821530 -84715729 + MLT1A1 LTR MaLR 39 168 -240 6 1102 324 333 102 0 chr5 67821728 67821874 -84715385 + MLT1A0-int LTR MaLR 4 164 -1571 6 1102 710 217 138 6 chr5 67821874 67822055 -84715204 + RMER6B LTR ERVK 1 205 -256 6 1102 1023 54 0 0 chr5 67822064 67822194 -84715065 + B1_Mus2 SINE Alu 18 147 0 6 1102 603 202 144 79 chr5 67822187 67822402 -84714857 + RMER6B LTR ERVK 233 461 0 6 1102 1092 302 200 74 chr5 67822606 67822673 -84714586 + MLT1A0-int LTR MaLR 259 336 -1399 6 1102 1160 58 0 0 chr5 67822673 67822811 -84714448 + B1_Mus1 SINE Alu 1 138 -10 6 1102 1092 302 200 74 chr5 67822811 67823484 -84713775 + MLT1A0-int LTR MaLR 337 1092 -643 6 1102 752 123 318 34 chr5 67823614 67823790 -84713469 - URR1A DNA MER1_type 0 226 1 6 1102 505 281 23 0 chr5 67823888 67824016 -84713243 - B1F SINE Alu -1 148 18 6 1102 507 301 150 18 chr5 67824038 67824265 -84712994 + MLT1A0-int LTR MaLR 1474 1730 -5 6 1102 449 297 156 55 chr5 67824287 67824615 -84712644 + MLT1A0 LTR MaLR 5 365 0 6 1102 390 253 22 0 chr5 67824747 67824838 -84712421 + PB1D10 SINE Alu 17 109 -8 6 1102 812 285 112 55 chr5 67824959 67825431 -84711828 + RMER5 LTR ERV1 36 534 0 6 1102 262 220 0 0 chr5 67825499 67825549 -84711710 - RSINE1 SINE B4 -31 134 85 6 1102 1193 84 67 6 chr5 67825557 67825736 -84711523 - B2_Mm1t SINE B2 -2 191 2 6 1102 194 341 73 0 chr5 67826407 67826489 -84710770 - L3 LINE CR1 -85 4404 4317 6 1102 218 288 51 16 chr5 67826499 67826585 -84710674 - L2a LINE L2 -6 3420 3278 6 1102 195 220 0 20 chr5 67826919 67826970 -84710289 - L2a LINE L2 -567 2852 2803 6 1102 975 110 7 27 chr5 67826980 67827130 -84710129 + B1_Mus1 SINE Alu 1 147 -1 6 1102 347 224 0 26 chr5 67827141 67827219 -84710040 - LTR37A LTR ERV1 -4 422 347 6 1102 234 0 0 0 chr5 67827396 67827422 -84709837 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 6 1102 317 330 42 34 chr5 67827658 67827896 -84709363 - L1MD2 LINE L1 -446 5913 5674 6 1102 354 45 0 0 chr5 67827907 67827951 -84709308 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1102 586 165 117 0 chr5 67827951 67828054 -84709205 - B1_Mus2 SINE Alu -9 138 24 6 1102 187 179 26 0 chr5 67828212 67828251 -84709008 + L2a LINE L2 2776 2815 -604 6 1102 675 223 0 15 chr5 67828268 67828400 -84708859 + B1_Mur2 SINE Alu 5 134 -15 6 1102 195 42 0 0 chr5 67828414 67828438 -84708821 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1102 360 0 0 0 chr5 67828443 67828483 -84708776 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1102 267 343 134 6 chr5 67828600 67828738 -84708521 + L2a LINE L2 3060 3205 -221 6 1102 423 0 0 0 chr5 67828738 67828785 -84708474 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1102 267 343 134 6 chr5 67828785 67828825 -84708434 + L2a LINE L2 3206 3261 -165 6 1102 516 16 0 0 chr5 67829348 67829409 -84707850 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1102 2014 91 3 119 chr5 67830157 67830518 -84706741 + ORR1A2 LTR MaLR 1 319 -8 6 1102 529 282 0 0 chr5 67831021 67831131 -84706128 + RSINE1 SINE B4 7 116 -49 6 1102 277 292 94 0 chr5 67831279 67831375 -84705884 - MLT1C LTR MaLR -6 461 357 6 1102 434 194 11 11 chr5 67831384 67831478 -84705781 + PB1 SINE Alu 22 115 -12 6 1102 279 227 88 33 chr5 67832438 67832529 -84704730 + MER5B DNA MER1_type 39 134 -44 6 1102 410 246 51 26 chr5 67832542 67832659 -84704600 + PB1D7 SINE Alu 1 120 0 6 1102 563 261 4 0 chr5 67832671 67832796 -84704463 - B1F SINE Alu -20 129 1 6 1102 540 81 0 0 chr5 67833264 67833338 -84703921 + (GGGA)n Simple_repeat Simple_repeat 4 77 0 6 1102 180 0 0 0 chr5 67833780 67833800 -84703459 + (TC)n Simple_repeat Simple_repeat 1 20 0 6 1102 234 0 0 0 chr5 67835014 67835040 -84702219 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1102 272 83 21 0 chr5 67836156 67836204 -84701055 + (TGGGGG)n Simple_repeat Simple_repeat 3 51 0 6 1102 215 182 0 52 chr5 67836517 67836532 -84700727 + C-rich Low_complexity Low_complexity 44 58 0 6 1102 476 0 34 0 chr5 67836532 67836591 -84700668 + (TTTTC)n Simple_repeat Simple_repeat 5 65 0 6 1102 215 182 0 52 chr5 67836591 67836633 -84700626 + C-rich Low_complexity Low_complexity 4 43 0 6 1102 1022 72 0 53 chr5 67836638 67836828 -84700431 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 6 1102 186 189 0 0 chr5 67836828 67836865 -84700394 + T-rich Low_complexity Low_complexity 3 39 0 6 1102 543 31 0 0 chr5 67836865 67836930 -84700329 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 6 1102 789 174 0 39 chr5 67837630 67837785 -84699474 - B1_Mur2 SINE Alu 0 149 1 6 1102 195 341 106 0 chr5 67838140 67838225 -84699034 + L2a LINE L2 3289 3382 -44 6 1102 711 83 0 0 chr5 67838597 67838705 -84698554 + (TTG)n Simple_repeat Simple_repeat 2 109 0 6 1102 333 0 0 0 chr5 67839091 67839128 -84698131 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1102 617 275 94 21 chr5 67839489 67839723 -84697536 + B4A SINE B4 1 251 -41 6 1102 557 28 0 14 chr5 67839724 67839796 -84697463 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1102 270 211 53 0 chr5 67840306 67840382 -84696877 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 6 1102 4826 188 81 5 chr5 67840620 67841573 -84695686 + RMER1B Other Other 42 1066 0 6 1102 252 111 0 45 chr5 67841962 67842028 -84695231 + T-rich Low_complexity Low_complexity 4 66 0 6 1102 1374 208 147 3 chr5 67842268 67842615 -84694644 - MTD LTR MaLR -2 417 21 6 1102 228 100 0 0 chr5 67842617 67842657 -84694602 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 6 1102 893 128 51 0 chr5 67842795 67842951 -84694308 + B2_Mm2 SINE B2 1 164 -31 6 1102 1019 142 6 0 chr5 67842960 67843136 -84694123 + (GA)n Simple_repeat Simple_repeat 1 177 0 6 1102 490 240 168 11 chr5 67843349 67843534 -84693725 - B3 SINE B2 -1 215 2 6 1102 252 360 51 14 chr5 67843643 67843781 -84693478 + Charlie15a DNA MER1_type 61 203 -21 6 1102 1249 27 7 0 chr5 67843826 67843973 -84693286 + B1_Mus1 SINE Alu 1 148 0 6 1102 209 33 33 0 chr5 67843975 67844005 -84693254 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1102 570 250 29 0 chr5 67844220 67844356 -84692903 + B1F1 SINE Alu 2 141 -8 6 1102 573 210 0 0 chr5 67844379 67844522 -84692737 + (TG)n Simple_repeat Simple_repeat 1 143 0 6 1102 329 227 0 9 chr5 67844546 67844657 -84692602 + (TG)n Simple_repeat Simple_repeat 1 110 0 6 1102 471 280 15 36 chr5 67845336 67845532 -84691727 + B4A SINE B4 3 194 -98 6 1102 294 246 31 0 chr5 67845511 67845576 -84691683 - ID4 SINE ID -9 74 8 6 1102 2387 137 20 35 chr5 67845830 67846230 -84691029 - ORR1B1 LTR MaLR 0 394 1 6 1102 1731 5 0 0 chr5 67846260 67846446 -84690813 - B2_Mm1a SINE B2 -6 187 2 6 1102 415 192 0 13 chr5 67846448 67846527 -84690732 - BC1_Mm scRNA scRNA -59 93 16 6 1102 225 274 0 31 chr5 67846471 67846535 -84690724 - tRNA-Gly-GGG tRNA tRNA -10 64 3 6 1102 513 199 87 8 chr5 67847335 67847462 -84689797 + RSINE1 SINE B4 5 141 -24 6 1102 216 111 0 0 chr5 67847711 67847747 -84689512 + (T)n Simple_repeat Simple_repeat 1 36 0 6 1102 1932 107 5 121 chr5 67847994 67848366 -84688893 - ORR1A4 LTR MaLR 0 329 1 6 1102 1276 25 0 0 chr5 67848546 67848705 -84688554 + B2_Mm1t SINE B2 2 160 -33 6 1102 207 0 0 0 chr5 67848705 67848728 -84688531 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 6 1102 261 0 0 0 chr5 67848757 67848786 -84688473 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1102 247 254 58 58 chr5 67848948 67849069 -84688190 + MLT1C LTR MaLR 5 125 -342 6 1102 210 186 0 0 chr5 67849136 67849148 -84688111 + T-rich Low_complexity Low_complexity 48 59 0 6 1102 854 68 8 0 chr5 67849148 67849266 -84687993 + (TTTCC)n Simple_repeat Simple_repeat 2 120 0 6 1102 210 186 0 0 chr5 67849266 67849312 -84687947 + T-rich Low_complexity Low_complexity 2 47 0 6 1102 1234 61 0 0 chr5 67849314 67849462 -84687797 - B1_Mus1 SINE Alu 0 148 1 6 1102 5887 123 23 42 chr5 67849483 67849686 -84687573 - Lx3B LINE L1 -2 6971 6763 6 1102 180 0 0 0 chr5 67849686 67849706 -84687553 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1102 5887 123 23 42 chr5 67849706 67850511 -84686748 - Lx3B LINE L1 -211 6762 5983 6 1102 805 328 47 47 chr5 67850861 67851203 -84686056 + MLT1C LTR MaLR 117 458 -9 6 1102 278 356 35 104 chr5 67851361 67851562 -84685697 + ORR1E LTR MaLR 8 194 -165 6 1102 21 36 0 0 chr5 67852831 67852859 -84684400 + AT_rich Low_complexity Low_complexity 1 28 0 7 1102 363 217 76 25 chr5 67852951 67853069 -84684190 - MER91B DNA Tip100 -60 130 7 7 1102 933 161 42 26 chr5 67854131 67854322 -84682937 - B2_Mm2 SINE B2 -1 194 1 7 1102 689 252 7 0 chr5 67854597 67854744 -84682515 - RSINE1 SINE B4 -15 150 3 7 1102 198 167 0 0 chr5 67854846 67854882 -84682377 + A-rich Low_complexity Low_complexity 1 36 0 7 1102 814 252 87 77 chr5 67854948 67855271 -84681988 + ORR1D2 LTR MaLR 4 329 -41 7 1102 1201 172 118 0 chr5 67855439 67855677 -84681582 - MTC LTR MaLR -152 269 4 7 1102 1017 189 60 23 chr5 67855761 67855978 -84681281 + URR1B DNA MER1_type 1 225 0 7 1102 293 236 180 0 chr5 67856089 67856178 -84681081 - MER46C DNA MER2_type -232 106 2 7 1102 273 314 77 44 chr5 67856581 67856764 -84680495 - MIRc SINE MIR -15 253 65 7 1102 423 340 35 0 chr5 67857075 67857219 -84680040 + LTR16A LTR ERVL 140 288 -163 7 1102 245 51 26 0 chr5 67857913 67857952 -84679307 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 7 1102 1721 171 116 14 chr5 67859334 67859689 -84677570 + ORR1B1 LTR MaLR 3 393 -1 7 1102 3456 67 47 4 chr5 67860180 67860659 -84676600 - L1_Mus1 LINE L1 0 6567 6096 7 1102 2201 139 47 53 chr5 67860987 67861367 -84675892 + ORR1C1 LTR MaLR 1 378 0 7 1102 593 205 253 0 chr5 67861422 67861584 -84675675 - B3 SINE B2 -13 203 1 7 1102 840 101 207 0 chr5 67861755 67861924 -84675335 - URR1B DNA MER1_type -21 204 1 7 1102 298 265 12 12 chr5 67862145 67862229 -84675030 + B3A SINE B2 55 138 -60 7 1102 1089 307 93 5 chr5 67862235 67862612 -84674647 - MER70B LTR ERVL -104 474 65 7 1102 1060 254 108 12 chr5 67862834 67863157 -84674102 - MTEa LTR MaLR -25 354 1 7 1102 2034 268 98 18 chr5 67863850 67864566 -84672693 - L1MB3 LINE L1 -46 6137 5365 7 1102 708 295 50 0 chr5 67864706 67864906 -84672353 - B3 SINE B2 -6 210 1 7 1102 314 233 105 19 chr5 67865441 67865546 -84671713 + L3 LINE CR1 3210 3323 -1166 7 1102 1282 112 43 0 chr5 67865870 67866057 -84671202 + B2_Mm2 SINE B2 1 195 0 7 1102 936 199 62 86 chr5 67866268 67866559 -84670700 + B4 SINE B4 1 284 -8 7 1102 236 175 62 31 chr5 67866599 67866664 -84670595 + MER5A1 DNA MER1_type 62 128 -38 7 1102 193 22 0 98 chr5 67866667 67866718 -84670541 + (CCCCCA)n Simple_repeat Simple_repeat 3 48 0 7 1102 259 259 65 55 chr5 67867503 67867762 -84669497 - L1MB3 LINE L1 0 6180 5900 7 1102 467 187 79 16 chr5 67869555 67869669 -84667590 - B1_Mur4 SINE Alu 0 120 18 7 1102 180 0 0 0 chr5 67869694 67869714 -84667545 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1102 376 242 87 39 chr5 67869746 67869849 -84667410 - PB1D10 SINE Alu -9 108 1 7 1102 1968 77 7 30 chr5 67870016 67870311 -84666948 + L1_Mus4 LINE L1 6346 6633 -3 7 1102 1009 262 6 79 chr5 67871042 67871382 -84665877 - Lx5 LINE L1 0 7050 6736 7 1102 424 192 152 0 chr5 67871382 67871481 -84665778 + B1_Mur1 SINE Alu 11 124 -25 7 1102 646 174 30 0 chr5 67871492 67871659 -84665600 + CT-rich Low_complexity Low_complexity 1 172 0 7 1102 225 226 9 38 chr5 67871707 67871813 -84665446 + CT-rich Low_complexity Low_complexity 2 104 0 7 1102 291 240 76 9 chr5 67871964 67872069 -84665190 - PB1D7 SINE Alu -7 113 2 7 1102 271 349 95 21 chr5 67872404 67872647 -84664612 + L1ME3A LINE L1 4746 5006 -1140 7 1102 254 295 69 69 chr5 67872770 67872901 -84664358 + L1MC LINE L1 5694 5824 -2058 7 1102 397 299 104 25 chr5 67874533 67874811 -84662448 + L1ME3A LINE L1 5799 6098 -75 7 1102 693 253 0 0 chr5 67874874 67875020 -84662239 + B1F SINE Alu 2 147 -2 7 1102 492 18 0 0 chr5 67875850 67875907 -84661352 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1102 253 295 45 11 chr5 67876162 67876251 -84661008 - MLT1A1 LTR MaLR -3 405 314 7 1102 1044 252 54 95 chr5 67876995 67877385 -84659874 - MTEa LTR MaLR -5 374 1 7 1102 530 264 15 15 chr5 67878253 67878384 -84658875 - ID_B1 SINE B4 -92 132 2 7 1102 846 169 211 0 chr5 67878572 67878738 -84658521 - B3 SINE B2 -15 201 1 7 1102 234 296 14 0 chr5 67878751 67878822 -84658437 - L1MC4 LINE L1 -480 7562 7491 7 1102 198 128 0 0 chr5 67879803 67879842 -84657417 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1102 419 228 9 37 chr5 67879842 67879972 -84657287 - L1M2 LINE L1 -535 5648 5523 7 1102 1095 122 0 0 chr5 67879981 67880197 -84657062 + (TG)n Simple_repeat Simple_repeat 1 216 0 7 1102 290 261 0 0 chr5 67880244 67880309 -84656950 - B4A SINE B4 -12 280 216 7 1102 396 316 7 29 chr5 67880348 67880488 -84656771 - RSINE1 SINE B4 -2 163 27 7 1102 389 270 186 50 chr5 67880499 67880698 -84656561 - B4 SINE B4 -57 235 10 7 1102 303 28 0 0 chr5 67881799 67881835 -84655424 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1102 1090 75 98 0 chr5 67881841 67882014 -84655245 + B2_Mm2 SINE B2 6 195 0 7 1102 587 252 29 7 chr5 67882055 67882191 -84655068 - B3 SINE B2 -9 207 69 7 1102 3360 68 53 1 chr5 67882191 67882820 -84654439 - L1_Mus4 LINE L1 -599 6037 5380 7 1102 447 107 12 12 chr5 67882820 67882905 -84654354 + Lx9 LINE L1 7559 7643 -1 7 1102 242 301 93 115 chr5 67882924 67883194 -84654065 + MLT1I LTR MaLR 146 409 -2 7 1102 384 82 0 0 chr5 67883209 67883270 -84653989 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1102 1126 219 55 87 chr5 67883316 67883511 -84653748 + ORR1E LTR MaLR 6 198 -161 7 1102 1858 168 77 6 chr5 67883511 67883877 -84653382 + ORR1B1 LTR MaLR 1 392 -2 7 1102 1126 219 55 87 chr5 67883877 67884047 -84653212 + ORR1E LTR MaLR 199 359 0 7 1102 33 0 0 0 chr5 67884893 67884926 -84652333 + AT_rich Low_complexity Low_complexity 1 33 0 7 1102 946 189 100 20 chr5 67886224 67886424 -84650835 - ID_B1 SINE B4 -7 217 2 7 1102 220 200 0 0 chr5 67886645 67886685 -84650574 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1102 1606 63 22 0 chr5 67887553 67887775 -84649484 + MusHAL1 LINE L1 1860 2086 -626 7 1102 212 0 36 0 chr5 67887852 67887880 -84649379 + (CAA)n Simple_repeat Simple_repeat 2 30 0 7 1102 466 337 102 16 chr5 67889207 67889327 -84647932 + MLT1A0 LTR MaLR 1 133 -232 7 1102 189 0 0 0 chr5 67889327 67889348 -84647911 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1102 466 337 102 16 chr5 67889348 67889483 -84647776 + MLT1A0 LTR MaLR 134 278 -87 7 1102 292 228 33 0 chr5 67890326 67890418 -84646841 + A-rich Low_complexity Low_complexity 3 97 0 7 1102 1202 254 41 62 chr5 67890969 67891338 -84645921 - MTE2a LTR MaLR -16 363 3 7 1102 244 286 66 0 chr5 67891514 67891605 -84645654 - L1M2 LINE L1 -4235 2614 2518 7 1102 288 294 59 0 chr5 67891670 67891789 -84645470 - MIR SINE MIR -30 232 107 7 1102 261 0 0 0 chr5 67891889 67891918 -84645341 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1102 594 332 75 59 chr5 67891951 67892352 -84644907 + MLT2B3 LTR ERVL 88 496 -71 7 1102 450 0 0 0 chr5 67892434 67892484 -84644775 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1102 234 315 27 0 chr5 67892539 67892612 -84644647 + MIR SINE MIR 8 82 -180 7 1102 317 234 0 0 chr5 67892760 67892824 -84644435 - ID4_ SINE ID -19 64 1 7 1102 220 321 7 44 chr5 67893509 67893646 -84643613 + L2a LINE L2 3294 3425 -1 7 1102 322 188 10 124 chr5 67894620 67894717 -84642542 + PB1 SINE Alu 35 120 -7 7 1102 384 227 227 0 chr5 67894728 67894847 -84642412 + RSINE1 SINE B4 3 148 -17 7 1102 234 338 25 0 chr5 67894976 67895056 -84642203 + ID SINE ID 1 82 -142 7 1102 291 121 0 0 chr5 67895124 67895182 -84642077 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 1102 243 0 0 0 chr5 67895182 67895209 -84642050 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1103 251 353 43 35 chr5 67895433 67895574 -84641685 - MLT1J2 LTR MaLR -285 163 22 7 1103 2256 152 25 10 chr5 67895700 67896098 -84641161 - MTC LTR MaLR -17 404 1 7 1103 189 0 0 0 chr5 67896818 67896839 -84640420 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 7 1103 1111 81 0 0 chr5 67896839 67896999 -84640260 - B2_Mm2 SINE B2 -34 161 2 7 1103 1338 102 16 0 chr5 67897018 67897205 -84640054 - B2_Mm2 SINE B2 -5 190 1 7 1103 520 302 53 29 chr5 67897246 67897469 -84639790 - MLT1E LTR MaLR -8 672 441 7 1103 252 310 132 60 chr5 67897477 67897779 -84639480 - MLT1E LTR MaLR -356 324 1 7 1103 648 277 7 7 chr5 67898501 67898650 -84638609 + B1F SINE Alu 1 149 0 7 1103 225 203 16 33 chr5 67898650 67898711 -84638548 + A-rich Low_complexity Low_complexity 6 65 0 7 1103 238 242 118 52 chr5 67898803 67898938 -84638321 - MIRb SINE MIR -21 241 98 7 1103 204 40 0 0 chr5 67898995 67899020 -84638239 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7 1103 825 171 0 0 chr5 67899024 67899164 -84638095 - B1_Mur3 SINE Alu -5 144 5 7 1103 234 237 0 0 chr5 67899245 67899321 -84637938 + (ATG)n Simple_repeat Simple_repeat 3 78 0 7 1103 1005 178 182 0 chr5 67901848 67901953 -84635306 - RMER1B Other Other 0 1066 921 7 1103 243 0 0 0 chr5 67901953 67901980 -84635279 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1103 1005 178 182 0 chr5 67901980 67902099 -84635160 - RMER1B Other Other -146 920 802 7 1103 1396 176 175 7 chr5 67902087 67902379 -84634880 - RMER1B Other Other -722 344 4 7 1103 408 174 141 0 chr5 67902581 67902673 -84634586 - Lx9 LINE L1 -180 7464 7360 7 1103 1650 177 155 0 chr5 67903023 67903391 -84633868 + Lx9 LINE L1 7198 7622 -22 7 1103 648 204 18 0 chr5 67903452 67903565 -84633694 + PB1D9 SINE Alu 1 115 -5 7 1103 6685 160 35 5 chr5 67903600 67904733 -84632526 + Lx2A1 LINE L1 5841 7007 -1 7 1103 304 286 75 8 chr5 67904794 67904928 -84632331 - L1MA9 LINE L1 0 6312 6170 7 1103 477 0 0 0 chr5 67905003 67905056 -84632203 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1103 854 324 129 21 chr5 67905067 67905625 -84631634 - Arthur1 DNA Tip100 -2867 1080 463 8 1103 188 184 20 0 chr5 67906705 67906754 -84630505 + GA-rich Low_complexity Low_complexity 3 52 0 8 1103 633 268 20 0 chr5 67906761 67906914 -84630345 - MTE2b LTR MaLR -223 156 1 8 1103 2268 85 13 7 chr5 67907129 67907436 -84629823 + RLTR27 LTR ERVK 1 309 0 8 1103 757 263 54 173 chr5 67908360 67908985 -84628274 + RMER15 LTR ERVL 1 551 -24 8 1103 249 364 130 13 chr5 67909355 67909656 -84627603 + L2c LINE L2 3052 3387 0 8 1103 21 0 0 0 chr5 67910058 67910079 -84627180 + AT_rich Low_complexity Low_complexity 1 21 0 8 1103 1076 64 43 0 chr5 67910270 67910411 -84626848 + B1_Mus1 SINE Alu 2 148 0 8 1103 1158 275 68 11 chr5 67912787 67913169 -84624090 - RMER15 LTR ERVL 0 575 172 8 1103 685 76 0 0 chr5 67913195 67913287 -84623972 + B1_Mus2 SINE Alu 46 137 -10 8 1103 306 274 60 60 chr5 67914023 67914190 -84623069 + LTR48 LTR ERV1 510 676 -111 8 1103 225 0 0 0 chr5 67914190 67914215 -84623044 + (TA)n Simple_repeat Simple_repeat 2 26 0 8 1103 577 306 84 8 chr5 67914222 67914459 -84622800 - B4A SINE B4 -30 262 8 8 1103 229 305 0 24 chr5 67914504 67914560 -84622699 - MER34 LTR ERV1 -44 498 443 8 1103 387 0 0 0 chr5 67914560 67914603 -84622656 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 8 1103 229 305 0 24 chr5 67914603 67914630 -84622629 - MER34 LTR ERV1 -100 442 417 8 1103 669 203 16 0 chr5 67914645 67914773 -84622486 - B3 SINE B2 -86 130 1 8 1103 326 225 14 0 chr5 67914776 67914847 -84622412 - MER34 LTR ERV1 -101 441 370 8 1103 760 195 16 0 chr5 67914865 67914993 -84622266 + B3 SINE B2 1 130 -86 8 1103 5285 48 6 0 chr5 67915042 67915693 -84621566 - L1_Mm LINE L1 -471 5412 4758 8 1103 5091 58 0 16 chr5 67915697 67916342 -84620917 + L1Md_F2 LINE L1 5936 6570 -12 8 1103 572 305 34 22 chr5 67916385 67916652 -84620607 - MER34 LTR ERV1 -300 271 5 8 1103 282 300 0 0 chr5 67917650 67917730 -84619529 + (CA)n Simple_repeat Simple_repeat 2 81 0 8 1103 3199 58 12 10 chr5 67918219 67918618 -84618641 + MTB LTR MaLR 1 400 0 8 1103 477 0 0 0 chr5 67919185 67919238 -84618021 + (TATG)n Simple_repeat Simple_repeat 4 56 0 8 1103 737 189 0 26 chr5 67919238 67919384 -84617875 - B1_Mur4 SINE Alu -6 144 3 8 1103 1330 90 26 5 chr5 67919437 67919627 -84617632 + B2_Mm2 SINE B2 2 195 0 8 1103 264 315 52 30 chr5 67919834 67919968 -84617291 - MLT1A1 LTR MaLR 0 408 272 8 1103 595 159 142 0 chr5 67923212 67923325 -84613934 + B3 SINE B2 2 130 -86 8 1103 429 20 0 0 chr5 67923348 67923398 -84613861 + (TCC)n Simple_repeat Simple_repeat 3 52 0 8 1103 186 292 68 14 chr5 67924655 67924728 -84612531 + L2 LINE L2 2744 2820 -599 8 1103 587 51 13 0 chr5 67925138 67925217 -84612042 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 8 1103 880 9 18 0 chr5 67925272 67925381 -84611878 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 8 1103 23 0 0 0 chr5 67926964 67926987 -84610272 + AT_rich Low_complexity Low_complexity 1 23 0 8 1103 351 0 0 0 chr5 67927078 67927117 -84610142 + (TTA)n Simple_repeat Simple_repeat 2 40 0 8 1103 747 152 23 0 chr5 67927117 67927249 -84610010 - B1_Mus1 SINE Alu -2 146 12 8 1103 310 312 39 23 chr5 67927778 67927906 -84609353 + MIRb SINE MIR 79 208 -60 8 1103 911 160 226 0 chr5 67928894 67929075 -84608184 + URR1A DNA MER1_type 1 222 -4 8 1103 2803 73 65 0 chr5 67930139 67930511 -84606748 - MTB LTR MaLR 0 400 5 8 1103 273 303 30 70 chr5 67932119 67932318 -84604941 - MLT1H LTR MaLR -249 300 110 8 1103 491 283 155 20 chr5 67932333 67932615 -84604644 + ORR1E LTR MaLR 1 340 -39 8 1103 22 0 0 0 chr5 67933065 67933087 -84604172 + AT_rich Low_complexity Low_complexity 1 22 0 8 1103 432 0 0 0 chr5 67933432 67933480 -84603779 + (TC)n Simple_repeat Simple_repeat 1 48 0 8 1103 424 166 32 101 chr5 67933595 67933843 -84603416 + C-rich Low_complexity Low_complexity 1 230 0 8 1103 268 253 55 0 chr5 67933844 67933935 -84603324 + MLT1A LTR MaLR 5 100 -274 8 1103 183 80 0 0 chr5 67933960 67933985 -84603274 + (CCCTAA)n Simple_repeat Simple_repeat 4 28 0 8 1103 415 186 10 10 chr5 67934010 67934108 -84603151 + GA-rich Low_complexity Low_complexity 3 100 0 8 1103 257 358 8 32 chr5 67934121 67934245 -84603014 + MLT1A LTR MaLR 254 374 0 8 1103 270 341 46 38 chr5 67934245 67934374 -84602885 + MTEb LTR MaLR 248 377 -2 8 1103 278 118 39 0 chr5 67934598 67934649 -84602610 + GA-rich Low_complexity Low_complexity 4 56 0 8 1103 984 213 195 19 chr5 67937359 67937666 -84599593 + ORR1D2 LTR MaLR 2 362 -8 8 1103 554 196 18 0 chr5 67938043 67938155 -84599104 + MLT1C LTR MaLR 308 421 -46 8 1103 225 291 0 0 chr5 67938700 67938755 -84598504 + Tigger16b DNA Tigger 248 302 -35 8 1103 27 0 0 0 chr5 67939151 67939178 -84598081 + AT_rich Low_complexity Low_complexity 1 27 0 8 1103 4201 65 0 4 chr5 67939678 67940206 -84597053 - L1Md_F2 LINE L1 0 6582 6057 8 1103 1654 233 72 95 chr5 67940751 67941268 -84595991 + RLTR18B LTR ERVK 2 506 -6 8 1103 469 179 9 18 chr5 67941379 67941493 -84595766 + GA-rich Low_complexity Low_complexity 3 115 0 8 1103 360 0 0 0 chr5 67942679 67942719 -84594540 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1103 260 287 144 29 chr5 67943508 67943755 -84593504 + L1M5 LINE L1 5383 5671 -453 8 1103 598 242 33 20 chr5 67943776 67943928 -84593331 + RSINE1 SINE B4 3 156 -9 8 1103 249 33 0 0 chr5 67944067 67944097 -84593162 + (TA)n Simple_repeat Simple_repeat 2 31 0 8 1103 1855 219 17 7 chr5 67944138 67944547 -84592712 - MTD LTR MaLR -5 414 2 8 1103 660 190 75 87 chr5 67944548 67944893 -84592366 - MTD-int LTR MaLR 0 1258 950 8 1103 681 271 132 11 chr5 67945130 67945417 -84591842 + MER44A DNA MER2_type 14 335 -4 8 1103 1008 244 51 94 chr5 67945481 67945833 -84591426 - ORR1E LTR MaLR -2 357 21 8 1103 268 197 211 0 chr5 67946265 67946336 -84590923 + ID_B1 SINE B4 109 194 -30 8 1103 250 225 270 0 chr5 67946336 67946354 -84590905 + B1F SINE Alu 28 140 -9 8 1103 381 240 0 40 chr5 67946563 67946663 -84590596 + ID_B1 SINE B4 1 96 -128 8 1103 4059 152 194 20 chr5 67946676 67947552 -84589707 + RLTR25B LTR ERVK 1 1028 0 8 1103 377 235 0 84 chr5 67947552 67947658 -84589601 + ID_B1 SINE B4 110 206 -18 8 1103 533 194 10 0 chr5 67948230 67948431 -84588828 + CT-rich Low_complexity Low_complexity 1 203 0 8 1103 1040 87 7 0 chr5 67948829 67948978 -84588281 + B2_Mm1t SINE B2 1 150 -43 8 1103 534 70 0 0 chr5 67949223 67949294 -84587965 + (TG)n Simple_repeat Simple_repeat 1 71 0 8 1103 373 328 23 15 chr5 67949300 67949430 -84587829 - RSINE1 SINE B4 -33 132 2 8 1103 22 0 0 0 chr5 67950312 67950334 -84586925 + AT_rich Low_complexity Low_complexity 1 22 0 8 1103 186 357 11 45 chr5 67950723 67950811 -84586448 - MIRc SINE MIR -62 206 122 8 1103 331 38 0 36 chr5 67950932 67950987 -84586272 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 8 1103 6544 33 3 0 chr5 67951032 67951790 -84585469 - L1Md_T LINE L1 -3 6579 5820 8 1103 248 308 13 0 chr5 67952242 67952320 -84584939 + ID_B1 SINE B4 37 115 -109 8 1103 404 260 0 9 chr5 67952429 67952534 -84584725 + B1_Mur2 SINE Alu 45 148 -1 8 1103 887 39 30 38 chr5 67952884 67953016 -84584243 + L1_Mus1 LINE L1 6437 6567 0 8 1103 258 130 0 0 chr5 67953198 67953225 -84584034 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1103 935 119 6 0 chr5 67953225 67953401 -84583858 + (GA)n Simple_repeat Simple_repeat 2 178 0 8 1103 258 130 0 0 chr5 67953401 67953419 -84583840 + (CA)n Simple_repeat Simple_repeat 2 19 0 8 1103 498 70 0 0 chr5 67953420 67953491 -84583768 + (GA)n Simple_repeat Simple_repeat 2 72 0 8 1103 589 231 12 81 chr5 67954580 67954740 -84582519 + B1_Mur1 SINE Alu 1 149 0 8 1103 186 43 0 0 chr5 67954865 67954888 -84582371 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 8 1103 231 156 43 22 chr5 67954923 67955015 -84582244 + (CAGAGA)n Simple_repeat Simple_repeat 3 96 0 8 1103 465 254 76 25 chr5 67955015 67955208 -84582051 - MLT1A0 LTR MaLR -210 198 3 8 1103 594 268 72 40 chr5 67956430 67956652 -84580607 + B4 SINE B4 2 230 -62 8 1103 233 270 16 0 chr5 67956791 67956854 -84580405 + B4 SINE B4 220 283 -9 8 1103 1649 118 66 21 chr5 67957125 67957532 -84579727 + ORR1A2 LTR MaLR 1 386 -8 8 1103 375 258 200 41 chr5 67958538 67958751 -84578508 - RLTR15 LTR ERVK -17 342 102 8 1103 414 0 0 0 chr5 67958751 67958797 -84578462 + (TC)n Simple_repeat Simple_repeat 2 47 0 8 1103 375 258 200 41 chr5 67958797 67958878 -84578381 - RLTR15 LTR ERVK -258 101 1 8 1103 231 114 0 0 chr5 67959275 67959310 -84577949 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 8 1103 305 274 38 27 chr5 67959311 67959495 -84577764 + L1MD LINE L1 4958 5143 -1003 8 1103 504 296 43 55 chr5 67959474 67959731 -84577528 + L1_Mur3 LINE L1 291 544 -7168 8 1103 2989 164 55 51 chr5 67959727 67960330 -84576929 + Lx7 LINE L1 6804 7408 -288 8 1103 600 182 246 43 chr5 67960536 67960633 -84576626 + Lx7 LINE L1 7447 7577 -119 8 1103 777 22 0 0 chr5 67960633 67960724 -84576535 + (GA)n Simple_repeat Simple_repeat 1 91 0 8 1103 600 182 246 43 chr5 67960724 67960833 -84576426 + Lx7 LINE L1 7578 7694 -2 8 1103 640 308 45 20 chr5 67960839 67961161 -84576098 + L1MC LINE L1 5122 5444 -735 8 1103 449 115 42 0 chr5 67961236 67961332 -84575927 + GA-rich Low_complexity Low_complexity 1 100 0 8 1103 4132 43 4 0 chr5 67961545 67962034 -84575225 + L1Md_F3 LINE L1 6094 6584 0 8 1103 210 241 16 65 chr5 67962587 67962649 -84574610 + L2b LINE L2 3285 3343 -32 8 1103 430 241 64 9 chr5 67964890 67964999 -84572260 - PB1 SINE Alu -7 120 6 8 1103 455 315 6 30 chr5 67965698 67965865 -84571394 + RSINE1 SINE B4 3 165 0 8 1103 456 19 0 0 chr5 67965882 67965935 -84571324 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 1103 422 236 135 0 chr5 67967195 67967343 -84569916 - MLT1D LTR MaLR 0 505 338 8 1103 882 189 87 0 chr5 67967343 67967539 -84569720 - ORR1C1 LTR MaLR 0 378 166 9 1103 274 138 17 17 chr5 67967573 67967632 -84569627 + GA-rich Low_complexity Low_complexity 3 61 0 9 1103 700 217 32 48 chr5 67967632 67967821 -84569438 - ORR1C1 LTR MaLR -188 186 1 9 1103 930 286 45 48 chr5 67968009 67968147 -84569112 + MLT1A LTR MaLR 2 139 -235 9 1103 2920 132 107 0 chr5 67968147 67968623 -84568636 + RLTR11A2 LTR ERVK 1 527 0 9 1103 930 286 45 48 chr5 67968623 67968858 -84568401 + MLT1A LTR MaLR 140 374 0 9 1103 233 122 0 24 chr5 67968911 67968953 -84568306 + MTC LTR MaLR 13 53 -368 9 1103 447 273 45 8 chr5 67968958 67969091 -84568168 - Lx8 LINE L1 -886 6587 6450 9 1103 270 81 0 0 chr5 67969435 67969472 -84567787 - RLTR31B_Mm LTR ERVK 0 557 521 9 1103 402 21 0 0 chr5 67969793 67969840 -84567419 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1103 443 311 41 31 chr5 67969917 67970113 -84567146 - B4A SINE B4 -56 236 39 9 1103 599 252 0 0 chr5 67970120 67970263 -84566996 + ID_B1 SINE B4 82 224 0 9 1103 623 274 120 58 chr5 67970282 67970557 -84566702 + B4A SINE B4 1 292 0 9 1103 244 204 0 0 chr5 67970621 67970670 -84566589 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1103 193 89 56 69 chr5 67972172 67972244 -84565015 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 9 1103 258 32 0 0 chr5 67972254 67972285 -84564974 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 9 1103 770 92 34 22 chr5 67972285 67972462 -84564797 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 9 1103 2721 67 3 11 chr5 67973174 67973523 -84563736 - ORR1A1 LTR MaLR 0 346 1 9 1103 1293 83 0 0 chr5 67973701 67973881 -84563378 + (TTC)n Simple_repeat Simple_repeat 1 180 0 9 1103 261 313 39 29 chr5 67973881 67973983 -84563276 - PB1D10 SINE Alu -5 112 10 9 1103 219 36 0 0 chr5 67974040 67974068 -84563191 + (TTG)n Simple_repeat Simple_repeat 1 28 0 9 1103 233 333 0 0 chr5 67974072 67974144 -84563115 - ID4 SINE ID -3 80 9 9 1103 481 234 18 26 chr5 67974354 67974468 -84562791 + PB1D10 SINE Alu 3 115 -2 9 1103 1121 122 20 41 chr5 67974637 67974834 -84562425 + B2_Mm2 SINE B2 3 195 0 9 1103 241 197 0 0 chr5 67975007 67975054 -84562205 + PB1D10 SINE Alu 67 119 -8 9 1103 601 308 67 38 chr5 67975172 67975513 -84561746 - MLT1D LTR MaLR -140 365 15 9 1103 188 61 0 57 chr5 67975871 67975906 -84561353 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 9 1103 270 176 0 0 chr5 67975924 67975975 -84561284 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1103 20685 19 0 0 chr5 67976026 67979058 -84558201 - L1Md_A LINE L1 -1 6581 3551 9 1103 14707 37 5 0 chr5 67979056 67980850 -84556409 + L1Md_A LINE L1 1736 3537 -2346 9 1103 290 271 91 34 chr5 67980875 67980963 -84556296 - RSINE1 SINE B4 -68 97 5 9 1103 750 139 0 0 chr5 67981189 67981354 -84555905 + (CA)n Simple_repeat Simple_repeat 2 166 0 9 1103 282 355 45 82 chr5 67981526 67981793 -84555466 - LTR80B LTR ERVL -322 262 6 9 1103 233 335 77 14 chr5 67982049 67982270 -84554989 - L1MA8 LINE L1 -1 6290 6056 9 1103 480 273 118 0 chr5 67982349 67982510 -84554749 - B3A SINE B2 -18 180 1 9 1103 375 60 0 0 chr5 67982525 67982575 -84554684 + (TCTCTG)n Simple_repeat Simple_repeat 5 54 0 9 1103 4399 76 19 0 chr5 67983003 67983568 -84553691 - L1_Mus3 LINE L1 -118 6520 5945 9 1103 549 0 0 0 chr5 67983922 67983983 -84553276 + (TC)n Simple_repeat Simple_repeat 1 61 0 9 1103 186 143 0 0 chr5 67985106 67985141 -84552118 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 9 1103 686 241 0 48 chr5 67985141 67985307 -84551952 - RSINE1 SINE B4 0 165 8 9 1103 1745 179 68 84 chr5 67985339 67985765 -84551494 + MTC LTR MaLR 3 421 0 9 1103 427 243 9 19 chr5 67985774 67985879 -84551380 - PB1D10 SINE Alu -5 112 9 9 1103 473 237 122 0 chr5 67987095 67987226 -84550033 + RSINE1 SINE B4 3 149 -16 9 1103 892 257 78 14 chr5 67987283 67987567 -84549692 + MER58B DNA MER1_type 29 330 -11 9 1103 213 154 0 0 chr5 67988046 67988085 -84549174 + T-rich Low_complexity Low_complexity 1 39 0 9 1103 266 388 22 71 chr5 67988099 67988282 -84548977 - B4 SINE B4 -118 174 1 9 1103 590 39 0 0 chr5 67988680 67988757 -84548502 + B2_Mm2 SINE B2 1 77 -118 9 1103 889 189 0 0 chr5 67988813 67988961 -84548298 + B1_Mur4 SINE Alu 1 148 -2 9 1103 188 135 0 26 chr5 67988972 67989010 -84548249 + GA-rich Low_complexity Low_complexity 3 39 0 9 1103 261 0 0 0 chr5 67990773 67990802 -84546457 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1103 396 0 0 0 chr5 67990802 67990845 -84546414 + (TA)n Simple_repeat Simple_repeat 1 44 0 9 1103 2876 50 55 21 chr5 67992600 67992985 -84544274 - MTB LTR MaLR 0 400 3 9 1103 512 345 68 44 chr5 67993089 67993383 -84543876 - Lx9 LINE L1 -233 7411 7111 9 1103 189 179 103 0 chr5 67993739 67993778 -84543481 - L2b LINE L2 -2 3373 3331 9 1103 1103 75 60 55 chr5 67995115 67995297 -84541962 - L1Md_F2 LINE L1 0 6582 6400 9 1103 536 60 24 0 chr5 67995370 67995454 -84541805 + (TCTCTG)n Simple_repeat Simple_repeat 3 88 0 9 1103 198 0 0 0 chr5 67995554 67995576 -84541683 + (CCCTAA)n Simple_repeat Simple_repeat 3 24 0 9 1103 2105 57 4 0 chr5 67995775 67996040 -84541219 - L1_Mus1 LINE L1 -9 6558 6293 9 1103 3187 66 0 2 chr5 67996041 67996435 -84540824 + L1_Mm LINE L1 5309 5701 -182 9 1103 232 48 48 0 chr5 67997659 67997701 -84539558 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 9 1103 23 0 0 0 chr5 67997938 67997961 -84539298 + AT_rich Low_complexity Low_complexity 1 23 0 9 1103 21 0 0 0 chr5 68003708 68003729 -84533530 + AT_rich Low_complexity Low_complexity 1 21 0 1 1103 255 326 136 0 chr5 68004155 68004302 -84532957 - MIR SINE MIR -35 227 61 2 1103 330 279 8 59 chr5 68004358 68004476 -84532783 - PB1D10 SINE Alu -5 112 1 3 1103 569 171 0 7 chr5 68004606 68004753 -84532506 + GA-rich Low_complexity Low_complexity 1 146 0 4 1103 574 296 63 56 chr5 68005417 68005703 -84531556 + B4A SINE B4 1 288 -4 5 1103 280 313 10 0 chr5 68014331 68014430 -84522829 + L1MA7 LINE L1 6179 6278 -13 6 1103 22 35 0 0 chr5 68015901 68015930 -84521329 + AT_rich Low_complexity Low_complexity 1 29 0 7 1103 210 118 0 0 chr5 68016938 68016972 -84520287 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 8 1103 269 324 144 2 chr5 68016990 68017149 -84520110 + MIRb SINE MIR 3 171 -91 9 1103 217 91 0 64 chr5 68017272 68017319 -84519940 + T-rich Low_complexity Low_complexity 2 45 0 1 1103 933 249 70 114 chr5 68018110 68018495 -84518764 + MTD LTR MaLR 1 368 -51 1 1103 499 300 101 27 chr5 68018750 68018969 -84518290 - B4A SINE B4 -4 288 54 1 1103 643 272 89 27 chr5 68019497 68019754 -84517505 - B4A SINE B4 -18 274 2 1 1103 234 0 0 0 chr5 68020030 68020056 -84517203 + (GGGTG)n Simple_repeat Simple_repeat 5 30 0 1 1103 912 230 5 5 chr5 68020142 68020352 -84516907 - B3 SINE B2 -6 210 1 1 1103 455 262 41 0 chr5 68021505 68021627 -84515632 - B1F SINE Alu -1 148 22 1 1103 317 344 49 0 chr5 68021645 68021808 -84515451 - MIRb SINE MIR -66 202 32 1 1103 21 0 0 0 chr5 68022318 68022339 -84514920 + AT_rich Low_complexity Low_complexity 1 21 0 1 1103 267 31 0 0 chr5 68022659 68022691 -84514568 + (CGTG)n Simple_repeat Simple_repeat 1 32 0 1 1103 273 57 0 0 chr5 68023069 68023104 -84514155 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1103 222 37 0 0 chr5 68023106 68023133 -84514126 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1103 24 32 0 0 chr5 68026324 68026355 -84510904 + AT_rich Low_complexity Low_complexity 1 31 0 2 1104 303 28 0 0 chr5 68026394 68026430 -84510829 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 2 1104 313 78 24 83 chr5 68026432 68026516 -84510743 - RMER17C LTR ERVK -135 275 197 2 1104 222 208 0 0 chr5 68026537 68026585 -84510674 + CT-rich Low_complexity Low_complexity 4 51 0 2 1104 243 0 0 0 chr5 68026598 68026625 -84510634 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1104 430 260 0 39 chr5 68026625 68026729 -84510530 - PB1D10 SINE Alu -17 100 1 2 1104 783 123 0 0 chr5 68026747 68026869 -84510390 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 2 1104 218 222 0 0 chr5 68026870 68026915 -84510344 + T-rich Low_complexity Low_complexity 1 45 0 2 1104 1261 34 0 0 chr5 68026935 68027081 -84510178 + B1_Mus2 SINE Alu 2 147 0 3 1104 221 309 12 24 chr5 68027162 68027245 -84510014 + ID4 SINE ID 2 83 0 3 1104 255 61 0 0 chr5 68027567 68027600 -84509659 + (CAA)n Simple_repeat Simple_repeat 1 33 0 3 1104 297 266 12 37 chr5 68028158 68028240 -84509019 - Lx9 LINE L1 -901 6743 6664 3 1104 1404 232 67 0 chr5 68028238 68028535 -84508724 - Lx9 LINE L1 -902 6742 6426 3 1104 468 0 0 0 chr5 68028595 68028647 -84508612 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1104 2286 198 14 48 chr5 68028654 68029169 -84508090 + RLTR18B LTR ERVK 2 498 -14 3 1104 198 0 0 0 chr5 68031014 68031036 -84506223 + (AGGGGG)n Simple_repeat Simple_repeat 1 22 0 3 1104 27 29 0 0 chr5 68032902 68032936 -84504323 + AT_rich Low_complexity Low_complexity 1 34 0 3 1104 1018 66 0 0 chr5 68034222 68034359 -84502900 + B1_Mus2 SINE Alu 11 147 0 3 1104 243 88 0 0 chr5 68034359 68034393 -84502866 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1104 1831 170 0 6 chr5 68034415 68034740 -84502519 + RLTR15 LTR ERVK 37 359 0 4 1104 219 288 68 0 chr5 68035441 68035514 -84501745 - L3 LINE CR1 -212 4277 4200 4 1104 279 279 114 15 chr5 68036002 68036133 -84501126 + L2a LINE L2 3270 3413 -13 4 1104 2059 167 65 20 chr5 68040344 68040747 -84496512 + MTC LTR MaLR 1 421 0 4 1104 255 253 34 67 chr5 68040814 68040903 -84496356 + MTEa LTR MaLR 33 118 -261 4 1104 2274 226 60 86 chr5 68040992 68041802 -84495457 - MTD-int LTR MaLR -469 789 1 4 1104 367 198 138 16 chr5 68041804 68041927 -84495332 - MTD LTR MaLR -2 417 280 4 1104 617 218 45 8 chr5 68041918 68042052 -84495207 - B3 SINE B2 -77 139 1 4 1104 273 269 52 69 chr5 68042182 68042298 -84494961 + PB1D10 SINE Alu 4 117 0 4 1104 2137 90 34 11 chr5 68042320 68042669 -84494590 - BGLII_B LTR ERVK 0 441 85 4 1104 703 216 106 23 chr5 68043664 68043929 -84493330 - Charlie1a DNA MER1_type -42 1413 1127 5 1104 625 164 57 26 chr5 68044078 68044265 -84492994 - B3 SINE B2 -4 191 8 5 1104 396 0 0 0 chr5 68044265 68044309 -84492950 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 1104 21 0 0 0 chr5 68044662 68044683 -84492576 + AT_rich Low_complexity Low_complexity 1 21 0 5 1104 207 0 0 0 chr5 68045083 68045106 -84492153 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 5 1104 1065 96 140 0 chr5 68045106 68045263 -84491996 - B2_Mm2 SINE B2 -15 180 2 5 1104 949 267 131 30 chr5 68045450 68045844 -84491415 + L1MB7 LINE L1 5723 6149 -30 5 1104 315 0 0 0 chr5 68046852 68046887 -84490372 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1104 252 122 0 0 chr5 68047511 68047552 -84489707 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1104 723 270 42 11 chr5 68049933 68050217 -84487042 + Lx7 LINE L1 5657 5993 -1480 5 1104 255 39 77 19 chr5 68050467 68050519 -84486740 + (CAAA)n Simple_repeat Simple_repeat 1 55 0 6 1104 285 252 117 8 chr5 68052144 68052264 -84484995 - B3A SINE B2 -1 215 83 6 1104 496 242 16 16 chr5 68055867 68055989 -84481270 + RSINE1 SINE B4 3 124 -41 6 1104 454 272 49 32 chr5 68056130 68056377 -84480882 + MER33 DNA MER1_type 44 294 -30 6 1104 789 237 120 4 chr5 68056559 68056817 -84480442 - B4 SINE B4 0 292 5 6 1104 720 254 83 18 chr5 68056998 68057226 -84480033 + MurERV4-int LTR ERVK 1459 1701 -3559 6 1104 1231 120 15 25 chr5 68057268 68057464 -84479795 + B2_Mm2 SINE B2 2 195 0 6 1104 277 264 0 0 chr5 68057817 68057870 -84479389 + B3 SINE B2 7 59 -157 6 1104 314 295 68 74 chr5 68057889 68058226 -84479033 - RLTR15 LTR ERVK -21 338 4 6 1104 570 205 57 44 chr5 68058228 68058386 -84478873 + B3 SINE B2 57 216 0 6 1104 761 229 26 42 chr5 68059229 68059420 -84477839 + B3A SINE B2 1 188 -10 6 1104 471 222 10 39 chr5 68059996 68060099 -84477160 + PB1D10 SINE Alu 2 101 -16 7 1104 189 147 0 0 chr5 68060153 68060187 -84477072 + (CAT)n Simple_repeat Simple_repeat 3 36 0 7 1104 339 268 70 26 chr5 68060196 68060311 -84476948 - ID_B1 SINE B4 -9 215 96 7 1104 856 68 0 0 chr5 68060350 68060467 -84476792 - B1_Mm SINE Alu 0 147 31 7 1104 23 0 0 0 chr5 68061238 68061261 -84475998 + AT_rich Low_complexity Low_complexity 1 23 0 7 1104 958 213 56 60 chr5 68061413 68061682 -84475577 + MTEa LTR MaLR 4 271 -108 7 1104 468 0 0 0 chr5 68062111 68062163 -84475096 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1104 187 234 26 0 chr5 68062596 68062673 -84474586 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 1104 518 254 77 89 chr5 68062709 68062884 -84474375 - B4 SINE B4 -22 270 100 7 1104 468 0 0 0 chr5 68062884 68062936 -84474323 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1104 518 254 77 89 chr5 68062936 68063019 -84474240 - B4 SINE B4 -193 99 15 7 1104 708 193 62 7 chr5 68063398 68063544 -84473715 + MTEa LTR MaLR 225 378 -1 7 1104 1296 129 8 55 chr5 68063815 68064052 -84473207 - URR1A DNA MER1_type 0 226 1 8 1104 973 199 102 0 chr5 68064612 68064808 -84472451 - B3 SINE B2 0 216 1 8 1104 1109 239 121 27 chr5 68065141 68065506 -84471753 - MTD LTR MaLR -16 403 5 8 1104 230 265 14 56 chr5 68066453 68066525 -84470734 + ID4_ SINE ID 12 80 -3 8 1104 796 70 9 0 chr5 68067071 68067186 -84470073 - B1_Mus1 SINE Alu 0 148 33 8 1104 3361 100 40 1 chr5 68067393 68068039 -84469220 + Lx3_Mus LINE L1 5409 6072 -937 8 1104 255 152 0 0 chr5 68068880 68068926 -84468333 + T-rich Low_complexity Low_complexity 1 46 0 8 1104 480 291 0 23 chr5 68069928 68070058 -84467201 + ID_B1 SINE B4 86 212 -12 8 1104 1294 67 90 0 chr5 68070303 68070481 -84466778 + B2_Mm2 SINE B2 1 194 -1 8 1104 267 31 0 0 chr5 68070514 68070546 -84466713 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1104 813 204 0 0 chr5 68070546 68070718 -84466541 + (TA)n Simple_repeat Simple_repeat 1 172 0 9 1104 233 388 8 8 chr5 68073454 68073571 -84463688 - PB1D10 SINE Alu 0 117 1 9 1104 394 234 131 60 chr5 68073765 68073933 -84463326 + B3A SINE B2 3 182 -16 9 1104 558 89 0 0 chr5 68075821 68075911 -84461348 + (CA)n Simple_repeat Simple_repeat 2 91 0 9 1104 201 226 0 0 chr5 68075978 68076031 -84461228 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1104 317 185 57 132 chr5 68077198 68077304 -84459955 + MTD LTR MaLR 2 99 -320 9 1104 661 257 87 5 chr5 68077323 68077507 -84459752 + MTD LTR MaLR 205 403 -16 9 1104 605 314 88 58 chr5 68079204 68079546 -84457713 + MLT1A0 LTR MaLR 14 365 0 9 1104 1044 120 100 5 chr5 68080209 68080419 -84456840 + RMER4B LTR ERVK 17 246 -339 9 1104 183 239 0 0 chr5 68080424 68080470 -84456789 + G-rich Low_complexity Low_complexity 2 47 0 9 1104 267 250 32 154 chr5 68080479 68080496 -84456763 + RMER4B LTR ERVK 388 404 -207 9 1104 201 74 0 0 chr5 68080496 68080523 -84456736 + (CTG)n Simple_repeat Simple_repeat 1 27 0 1 1104 385 236 74 42 chr5 68080523 68080661 -84456598 + RMER4B LTR ERVK 343 524 -87 9 1104 209 163 20 0 chr5 68080767 68080816 -84456443 + G-rich Low_complexity Low_complexity 5 54 0 1 1104 500 254 18 0 chr5 68080845 68080955 -84456304 - B1F1 SINE Alu -35 114 3 1 1104 868 196 83 60 chr5 68081221 68081438 -84455821 + URR1A DNA MER1_type 1 222 -4 1 1104 423 98 0 0 chr5 68082187 68082248 -84455011 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1104 21 0 0 0 chr5 68083390 68083411 -84453848 + AT_rich Low_complexity Low_complexity 1 21 0 1 1104 1202 62 0 0 chr5 68086191 68086336 -84450923 + B1_Mus2 SINE Alu 3 147 0 1 1104 297 0 0 0 chr5 68086995 68087028 -84450231 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1104 432 67 0 0 chr5 68087028 68087088 -84450171 + (GA)n Simple_repeat Simple_repeat 2 61 0 1 1104 665 331 63 4 chr5 68087089 68087344 -84449915 - B4A SINE B4 -20 272 3 1 1104 369 245 53 11 chr5 68087722 68087817 -84449442 - PB1D10 SINE Alu -5 112 14 1 1104 447 19 0 0 chr5 68088147 68088199 -84449060 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1104 517 120 11 11 chr5 68088828 68088921 -84448338 + (TTTTC)n Simple_repeat Simple_repeat 2 94 0 1 1104 186 323 15 15 chr5 68088969 68089035 -84448224 - MIRm SINE MIR -16 260 195 1 1104 1197 240 73 16 chr5 68089261 68089574 -84447685 + MTD LTR MaLR 75 405 -14 1 1104 5503 102 55 17 chr5 68090182 68091012 -84446247 + Lx4A LINE L1 6197 7058 0 1 1104 836 290 69 24 chr5 68091903 68092193 -84445066 + MTE2a LTR MaLR 19 321 -58 1 1104 243 0 0 0 chr5 68092197 68092224 -84445035 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1104 404 243 16 0 chr5 68092330 68092424 -84444835 - B3 SINE B2 -73 125 28 1 1104 401 247 0 82 chr5 68092487 68092584 -84444675 + RSINE1 SINE B4 71 159 -6 1 1104 435 244 0 97 chr5 68093619 68093662 -84443597 + MT2B LTR ERVL 126 154 -447 1 1104 868 73 0 12 chr5 68093662 68093792 -84443467 + B1_Mus1 SINE Alu 1 117 0 1 1104 254 197 0 14 chr5 68093792 68093864 -84443395 + A-rich Low_complexity Low_complexity 5 75 0 1 1104 196 345 73 13 chr5 68094679 68094829 -84442430 + L2 LINE L2 1161 1319 -2100 1 1104 2680 220 19 16 chr5 68094878 68095459 -84441800 + Lx7 LINE L1 6807 7389 -307 1 1104 1416 182 51 51 chr5 68095430 68095765 -84441494 + Lx7 LINE L1 7327 7661 -35 1 1104 1379 214 82 43 chr5 68096272 68096663 -84440596 - MTD LTR MaLR -13 406 1 1 1104 741 60 0 19 chr5 68097373 68097476 -84439783 - B1_Mm SINE Alu -1 146 46 1 1104 240 246 17 34 chr5 68097423 68097482 -84439777 - RLTR25A LTR ERVK -531 572 515 1 1104 216 0 0 0 chr5 68097699 68097723 -84439536 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 1 1104 477 0 0 0 chr5 68097726 68097779 -84439480 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1104 4084 268 94 25 chr5 68098083 68099642 -84437617 - Tigger1 DNA MER2_type -13 2405 739 1 1104 38924 10 0 7 chr5 68099642 68104802 -84432457 + L1Md_A LINE L1 469 5586 -297 1 1104 8971 15 0 0 chr5 68104802 68105798 -84431461 + L1Md_A LINE L1 5587 6582 0 1 1104 1867 247 109 41 chr5 68105872 68106459 -84430800 - Tigger1 DNA MER2_type -1670 748 122 1 1104 24 0 0 0 chr5 68107044 68107068 -84430191 + AT_rich Low_complexity Low_complexity 1 24 0 1 1104 1530 97 9 0 chr5 68108439 68108665 -84428594 - Lx2 LINE L1 0 6997 6770 1 1104 3165 133 0 16 chr5 68108665 68109161 -84428098 - Lx2 LINE L1 -366 6631 6144 1 1104 318 50 0 0 chr5 68110566 68110606 -84426653 + (TTCG)n Simple_repeat Simple_repeat 2 41 0 1 1104 211 342 13 0 chr5 68110677 68110692 -84426567 + B4 SINE B4 70 85 -207 1 1104 383 298 0 9 chr5 68110692 68110797 -84426462 + B1F SINE Alu 1 104 -45 1 1104 208 327 146 32 chr5 68110891 68111049 -84426210 - MER5A DNA MER1_type -13 176 1 1 1104 441 54 0 0 chr5 68111082 68111138 -84426121 + (TAA)n Simple_repeat Simple_repeat 2 57 0 1 1104 293 325 0 0 chr5 68111175 68111252 -84426007 - Cheshire DNA MER1_type -2161 259 183 1 1104 636 54 0 0 chr5 68111388 68111462 -84425797 + L1Md_F2 LINE L1 5513 5586 -297 1 1104 8501 29 4 2 chr5 68111463 68112453 -84424806 + L1Md_F2 LINE L1 5588 6579 -3 1 1104 4407 32 0 0 chr5 68112621 68113127 -84424132 - L1Md_F3 LINE L1 -329 6255 5750 1 1104 852 40 32 8 chr5 68113127 68113252 -84424007 + L1Md_F3 LINE L1 6457 6584 0 1 1104 360 222 25 0 chr5 68113269 68113350 -84423909 + B4A SINE B4 1 83 -209 1 1104 211 375 5 37 chr5 68114320 68114511 -84422748 + MIRb SINE MIR 40 224 -44 1 1104 2084 142 49 39 chr5 68114555 68114942 -84422317 + ORR1B1 LTR MaLR 4 394 0 1 1104 246 387 48 0 chr5 68116183 68116307 -84420952 - L2b LINE L2 0 3375 3246 1 1104 21 36 0 0 chr5 68116650 68116678 -84420581 + AT_rich Low_complexity Low_complexity 1 28 0 1 1104 300 111 0 0 chr5 68117664 68117709 -84419550 + (TCCA)n Simple_repeat Simple_repeat 2 46 0 1 1104 717 193 30 0 chr5 68117709 68117844 -84419415 - B1_Mur1 SINE Alu -9 140 2 1 1104 255 341 59 64 chr5 68118211 68118430 -84418829 + Charlie15a DNA MER1_type 6 223 -1 1 1104 528 81 0 0 chr5 68118729 68118803 -84418456 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1104 398 211 139 30 chr5 68119892 68120058 -84417201 + MIR SINE MIR 79 262 0 1 1104 1137 82 0 0 chr5 68122005 68122163 -84415096 + (TCTA)n Simple_repeat Simple_repeat 4 161 0 1 1104 3609 53 0 30 chr5 68122870 68123375 -84413884 - L1Md_F2 LINE L1 0 6582 6116 1 1104 317 286 0 0 chr5 68125414 68125512 -84411747 + T-rich Low_complexity Low_complexity 1 98 0 1 1104 361 253 13 0 chr5 68125517 68125596 -84411663 - ID_B1 SINE B4 -53 171 92 1 1104 714 321 44 11 chr5 68125691 68125962 -84411297 - B4 SINE B4 -12 280 1 1 1104 226 83 0 0 chr5 68125987 68126023 -84411236 - Lx9 LINE L1 -311 7333 7298 1 1104 377 103 35 0 chr5 68126017 68126075 -84411184 + Lx9 LINE L1 7325 7384 -260 1 1104 1913 158 91 6 chr5 68126094 68126445 -84410814 + ORR1C2 LTR MaLR 1 381 -3 1 1104 533 40 67 0 chr5 68126462 68126537 -84410722 + ORR1C2 LTR MaLR 285 364 -20 1 1104 21 0 0 0 chr5 68126706 68126727 -84410532 + AT_rich Low_complexity Low_complexity 1 21 0 1 1104 1630 254 194 27 chr5 68127245 68127724 -84409535 + Lx9 LINE L1 6779 7337 -307 1 1104 313 260 0 14 chr5 68127780 68127854 -84409405 - B3A SINE B2 -121 77 5 1 1104 435 209 121 12 chr5 68130198 68130363 -84406896 - Tigger7 DNA MER2_type -33 2458 2276 1 1104 277 329 0 0 chr5 68130366 68130451 -84406808 - Tigger7 DNA MER2_type -2378 113 29 1 1104 4289 132 25 3 chr5 68130950 68131686 -84405573 + ORR1B1-int LTR MaLR 758 1509 0 1 1104 2218 148 15 57 chr5 68131686 68132031 -84405228 + ORR1B1 LTR MaLR 1 348 -46 1 1104 5492 83 16 4 chr5 68132031 68132777 -84404482 + L1_Mus3 LINE L1 5884 6638 0 1 1104 2218 148 15 57 chr5 68132777 68132833 -84404426 + ORR1B1 LTR MaLR 349 385 -9 1 1104 369 326 28 7 chr5 68133333 68133478 -84403781 - B1F1 SINE Alu -1 148 1 1 1104 304 372 72 31 chr5 68133536 68133952 -84403307 + L2 LINE L2 2205 2637 -782 1 1104 199 71 48 0 chr5 68133959 68134001 -84403258 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 1 1104 360 266 80 31 chr5 68134683 68134846 -84402413 + ORR1E LTR MaLR 19 189 -170 1 1104 219 36 0 0 chr5 68135652 68135680 -84401579 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 1104 983 88 0 109 chr5 68135794 68135959 -84401300 + B1_Mm SINE Alu 1 147 0 1 1104 411 323 60 8 chr5 68137378 68137628 -84399631 - L1ME2 LINE L1 -17 6147 5885 1 1104 273 291 48 41 chr5 68137706 68137853 -84399406 - L1ME2 LINE L1 -390 5774 5627 1 1104 308 115 58 0 chr5 68138066 68138118 -84399141 - PB1D7 SINE Alu -1 119 65 1 1104 470 186 19 29 chr5 68138073 68138178 -84399081 - ID_B1 SINE B4 -8 216 113 1 1104 354 181 0 137 chr5 68138835 68139251 -84398008 + (CAGT)n Simple_repeat Simple_repeat 1 359 0 1 1104 216 97 0 0 chr5 68140096 68140127 -84397132 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1104 255 125 0 0 chr5 68140749 68140789 -84396470 + (ATG)n Simple_repeat Simple_repeat 1 40 0 1 1104 444 118 0 0 chr5 68140850 68140918 -84396341 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1104 21 36 0 0 chr5 68142119 68142147 -84395112 + AT_rich Low_complexity Low_complexity 1 28 0 1 1104 1040 198 61 9 chr5 68142503 68142717 -84394542 + URR1A DNA MER1_type 1 225 -1 1 1104 406 311 78 66 chr5 68144217 68144565 -84392694 - MARNA DNA Mariner -174 412 61 1 1104 212 0 36 0 chr5 68144732 68144760 -84392499 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1104 234 0 0 0 chr5 68146228 68146254 -84391005 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1104 1429 68 5 26 chr5 68148472 68148667 -84388592 - B2_Mm1t SINE B2 -1 192 2 1 1104 288 0 0 0 chr5 68148923 68148955 -84388304 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 1 1104 22 35 0 0 chr5 68150422 68150451 -84386808 + AT_rich Low_complexity Low_complexity 1 29 0 1 1104 183 42 0 0 chr5 68150501 68150525 -84386734 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1104 1318 72 72 0 chr5 68152601 68152781 -84384478 - B2_Mm1a SINE B2 0 193 1 1 1104 468 0 0 0 chr5 68154145 68154197 -84383062 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1104 354 286 14 83 chr5 68156685 68156830 -84380429 + B4 SINE B4 79 213 -79 1 1104 682 151 15 31 chr5 68156702 68156832 -84380427 + B1_Mus2 SINE Alu 9 136 -11 1 1105 279 0 0 0 chr5 68157627 68157658 -84379601 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 1 1105 1185 106 0 0 chr5 68157660 68157840 -84379419 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 1 1105 239 79 0 26 chr5 68158428 68158467 -84378792 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1 1105 512 48 169 0 chr5 68159373 68159456 -84377803 - L1_Mur1 LINE L1 -578 5308 5212 1 1105 3470 63 21 13 chr5 68159456 68159922 -84377337 + Lx3_Mus LINE L1 6540 7009 0 1 1105 373 296 44 0 chr5 68160665 68160800 -84376459 + MLT1A LTR MaLR 39 179 -195 1 1105 1981 141 21 116 chr5 68160849 68161282 -84375977 + ORR1B1 LTR MaLR 1 392 -2 1 1105 477 0 0 0 chr5 68161915 68161968 -84375291 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1105 241 294 106 0 chr5 68164283 68164368 -84372891 + MLT1A0 LTR MaLR 15 108 -257 2 1105 725 277 39 62 chr5 68164400 68164658 -84372601 + B4 SINE B4 21 272 -20 2 1105 324 0 0 0 chr5 68164689 68164725 -84372534 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1105 393 22 0 0 chr5 68164725 68164770 -84372489 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 1105 1139 176 10 14 chr5 68165038 68165246 -84372013 + URR1B DNA MER1_type 1 207 -18 2 1105 380 191 81 35 chr5 68166878 68166965 -84370294 + B1_Mur1 SINE Alu 26 116 -33 2 1105 216 212 0 0 chr5 68166980 68167046 -84370213 + CT-rich Low_complexity Low_complexity 2 67 0 2 1105 375 60 0 0 chr5 68167049 68167099 -84370160 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1105 1007 261 22 32 chr5 68168113 68168390 -84368869 - B4 SINE B4 -16 276 3 2 1105 29 0 0 0 chr5 68172346 68172375 -84364884 + AT_rich Low_complexity Low_complexity 1 29 0 2 1105 21 0 0 0 chr5 68174569 68174590 -84362669 + AT_rich Low_complexity Low_complexity 1 21 0 2 1105 213 264 144 33 chr5 68174821 68174911 -84362348 + L2a LINE L2 3327 3426 0 2 1105 222 37 0 0 chr5 68175305 68175332 -84361927 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1105 25 51 0 0 chr5 68175699 68175738 -84361521 + AT_rich Low_complexity Low_complexity 1 39 0 2 1105 468 315 0 0 chr5 68175821 68175929 -84361330 - PB1D7 SINE Alu -12 108 1 2 1105 1082 125 0 6 chr5 68176464 68176641 -84360618 + (GAA)n Simple_repeat Simple_repeat 1 176 0 2 1105 24 53 0 0 chr5 68176986 68177024 -84360235 + AT_rich Low_complexity Low_complexity 1 38 0 2 1105 3120 62 20 15 chr5 68179428 68179822 -84357437 + MTA_Mm LTR MaLR 1 396 0 2 1105 288 283 0 0 chr5 68180072 68180178 -84357081 + (TG)n Simple_repeat Simple_repeat 1 106 0 2 1105 666 284 171 12 chr5 68180178 68180424 -84356835 - B4A SINE B4 0 292 8 2 1105 334 250 106 20 chr5 68180529 68180706 -84356553 + L1MA9 LINE L1 6042 6229 -62 2 1105 701 333 51 30 chr5 68180707 68181038 -84356221 - MER2 DNA MER2_type -6 339 2 2 1105 33 56 0 0 chr5 68181343 68181397 -84355862 + AT_rich Low_complexity Low_complexity 1 54 0 2 1105 216 0 0 0 chr5 68181399 68181423 -84355836 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 2 1105 259 337 22 0 chr5 68181433 68181525 -84355734 - ID_B1 SINE B4 -49 175 82 2 1105 1283 187 15 0 chr5 68181547 68181745 -84355514 - B3 SINE B2 -14 202 2 2 1105 642 269 57 57 chr5 68182244 68182453 -84354806 + B3 SINE B2 6 214 -2 2 1105 888 169 0 0 chr5 68182455 68182633 -84354626 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 2 1105 894 172 0 10 chr5 68182640 68183231 -84354028 + (CATA)n Simple_repeat Simple_repeat 1 584 0 2 1105 972 156 0 0 chr5 68183261 68183441 -84353818 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2 1105 906 167 0 0 chr5 68183453 68183633 -84353626 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2 1105 432 82 0 0 chr5 68183722 68183783 -84353476 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1105 531 282 112 65 chr5 68183820 68184097 -84353162 - B4A SINE B4 -2 290 1 2 1105 213 159 0 0 chr5 68184363 68184407 -84352852 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 2 1105 3440 30 2 39 chr5 68184620 68185034 -84352225 + L1Md_T LINE L1 6184 6582 0 2 1105 852 299 112 8 chr5 68185143 68185517 -84351742 + L1MB5 LINE L1 5572 5984 -190 2 1105 667 245 61 0 chr5 68186224 68186371 -84350888 - RSINE1 SINE B4 -8 157 2 2 1105 565 272 36 7 chr5 68186371 68186508 -84350751 - B1_Mur1 SINE Alu 0 149 9 2 1105 311 336 23 85 chr5 68186510 68186640 -84350619 - B1F SINE Alu -27 122 1 2 1105 442 140 21 21 chr5 68186784 68186879 -84350380 + (CATA)n Simple_repeat Simple_repeat 2 96 0 2 1105 229 333 25 13 chr5 68186990 68187069 -84350190 + B4 SINE B4 1 80 -212 2 1105 3477 6 0 0 chr5 68187639 68188004 -84349255 - L1Md_A LINE L1 0 6582 6218 2 1105 216 97 0 0 chr5 68189381 68189412 -84347847 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1105 302 333 76 0 chr5 68189846 68189951 -84347308 + MER5A DNA MER1_type 74 186 -3 2 1105 1819 142 108 9 chr5 68191097 68191432 -84345827 + RLTR9A LTR ERVK 1 368 0 2 1105 206 139 0 44 chr5 68191630 68191675 -84345584 + GA-rich Low_complexity Low_complexity 3 45 0 2 1105 840 236 107 10 chr5 68192475 68192672 -84344587 + B3 SINE B2 1 216 0 2 1105 237 98 0 0 chr5 68193272 68193313 -84343946 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 2 1105 1128 138 109 38 chr5 68195991 68196202 -84341057 - URR1A DNA MER1_type 0 226 1 2 1105 23 33 0 0 chr5 68197866 68197896 -84339363 + AT_rich Low_complexity Low_complexity 1 30 0 2 1105 237 316 79 37 chr5 68199427 68199591 -84337668 - L2a LINE L2 -18 3408 3238 2 1105 383 194 0 10 chr5 68200191 68200295 -84336964 + (TA)n Simple_repeat Simple_repeat 2 104 0 2 1105 452 266 215 23 chr5 68201662 68201839 -84335420 - B3 SINE B2 -5 211 1 2 1105 648 0 0 0 chr5 68201973 68202045 -84335214 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 2 1105 435 38 0 0 chr5 68202987 68203040 -84334219 + (CTATT)n Simple_repeat Simple_repeat 3 55 0 2 1105 1224 82 0 0 chr5 68203059 68203205 -84334054 - B1_Mus1 SINE Alu -1 147 2 2 1105 738 155 0 8 chr5 68205654 68205771 -84331488 - B1_Mur2 SINE Alu -32 117 2 2 1105 194 116 0 23 chr5 68206563 68206607 -84330652 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 2 1105 291 331 67 7 chr5 68206936 68207085 -84330174 + L2c LINE L2 3216 3373 -14 2 1105 642 331 12 28 chr5 68207579 68207828 -84329431 + B4A SINE B4 1 245 -47 2 1105 1166 42 0 0 chr5 68208235 68208378 -84328881 + B1_Mus1 SINE Alu 6 148 0 2 1105 3533 162 78 42 chr5 68208793 68209483 -84327776 - RLTR19B LTR ERVK 0 715 1 2 1105 337 323 60 0 chr5 68209775 68209908 -84327351 - ID_B1 SINE B4 0 224 84 2 1105 281 152 67 0 chr5 68211748 68211853 -84325406 + (TA)n Simple_repeat Simple_repeat 1 112 0 2 1105 297 302 0 11 chr5 68212628 68212715 -84324544 + CT-rich Low_complexity Low_complexity 3 88 0 2 1105 180 77 0 0 chr5 68212715 68212741 -84324518 + (TTCTC)n Simple_repeat Simple_repeat 4 29 0 2 1105 237 247 60 24 chr5 68212862 68212945 -84324314 + MTEb LTR MaLR 294 379 0 2 1105 279 173 0 0 chr5 68216680 68216732 -84320527 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 2 1105 189 224 155 0 chr5 68218335 68218393 -84318866 + L3 LINE CR1 2788 2854 -1635 2 1105 200 182 0 0 chr5 68218496 68218529 -84318730 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1105 474 18 0 0 chr5 68218529 68218584 -84318675 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1105 504 0 0 0 chr5 68219142 68219198 -84318061 + (TTTCC)n Simple_repeat Simple_repeat 5 60 0 2 1105 609 123 0 0 chr5 68219198 68219304 -84317955 + (TCCC)n Simple_repeat Simple_repeat 1 106 0 2 1105 857 175 22 14 chr5 68219311 68219450 -84317809 - B1_Mur1 SINE Alu -8 141 2 2 1105 282 238 34 137 chr5 68219842 68219959 -84317300 + MLT1A LTR MaLR 19 123 -251 2 1105 504 0 0 0 chr5 68219999 68220055 -84317204 + (TC)n Simple_repeat Simple_repeat 1 56 0 2 1105 309 132 98 25 chr5 68220089 68220252 -84317007 + (TCTCTG)n Simple_repeat Simple_repeat 2 176 0 2 1105 231 284 23 80 chr5 68220328 68220416 -84316843 + MLT1A LTR MaLR 305 387 -21 2 1105 1023 166 128 20 chr5 68220416 68220619 -84316640 - URR1B DNA MER1_type 0 225 1 2 1105 199 365 65 18 chr5 68221028 68221198 -84316061 + L3 LINE CR1 4292 4469 -20 2 1105 432 145 51 0 chr5 68221216 68221333 -84315926 + (TA)n Simple_repeat Simple_repeat 2 124 0 2 1105 594 226 28 65 chr5 68221334 68221509 -84315750 + Lx9 LINE L1 6792 7093 -551 2 1105 946 267 78 34 chr5 68221521 68221932 -84315327 + Lx9 LINE L1 7198 7626 -18 2 1105 24 0 0 0 chr5 68221972 68221996 -84315263 + AT_rich Low_complexity Low_complexity 1 24 0 2 1105 378 0 0 0 chr5 68222487 68222529 -84314730 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1105 228 35 0 0 chr5 68223293 68223322 -84313937 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1105 915 41 0 0 chr5 68223324 68223446 -84313813 - B1_Mm SINE Alu -13 134 13 2 1105 300 137 0 0 chr5 68224009 68224060 -84313199 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 2 1105 1314 279 21 8 chr5 68224776 68225155 -84312104 + Lx9 LINE L1 6603 6986 -658 2 1105 1717 124 12 84 chr5 68225223 68225567 -84311692 + ORR1A2 LTR MaLR 9 327 0 2 1105 545 248 0 76 chr5 68225567 68225711 -84311548 + Lx9 LINE L1 7028 7160 -484 2 1105 315 0 0 0 chr5 68227340 68227375 -84309884 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1105 1119 194 4 29 chr5 68227896 68228135 -84309124 + RMER4B LTR ERVK 14 246 -339 2 1105 448 214 237 0 chr5 68228179 68228366 -84308893 + RMER4B LTR ERVK 343 574 -11 2 1105 857 298 37 42 chr5 68228368 68228722 -84308537 - L1_Mur3 LINE L1 -19 5861 5510 2 1105 1171 253 101 0 chr5 68230099 68230478 -84306781 - MTD LTR MaLR -16 403 4 2 1105 952 242 71 39 chr5 68230822 68231102 -84306157 + B4 SINE B4 2 290 -2 2 1105 327 330 42 36 chr5 68231568 68231760 -84305499 + L1M5 LINE L1 5513 5705 -419 2 1105 192 217 0 42 chr5 68232284 68232332 -84304927 - L2a LINE L2 -49 3377 3332 2 1105 1557 225 52 80 chr5 68232332 68232405 -84304854 - RLTR11A LTR ERVK 0 528 457 2 1105 261 0 0 0 chr5 68232405 68232434 -84304825 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1105 1557 225 52 80 chr5 68232434 68232838 -84304421 - RLTR11A LTR ERVK -72 456 66 2 1105 508 261 0 16 chr5 68234366 68234487 -84302772 - PB1D7 SINE Alu 0 120 2 2 1105 255 31 0 0 chr5 68234799 68234831 -84302428 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1105 209 273 34 0 chr5 68234872 68234960 -84302299 + L2a LINE L2 2996 3086 -340 2 1105 234 0 0 0 chr5 68236338 68236364 -84300895 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 1105 282 29 0 0 chr5 68238291 68238326 -84298933 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1105 203 178 0 22 chr5 68238676 68238722 -84298537 + G-rich Low_complexity Low_complexity 3 47 0 3 1105 468 0 0 0 chr5 68239750 68239802 -84297457 + (GA)n Simple_repeat Simple_repeat 1 52 0 3 1105 180 0 0 0 chr5 68241224 68241244 -84296015 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 1105 1174 44 0 0 chr5 68241244 68241380 -84295879 - B1_Mus1 SINE Alu -12 136 1 3 1105 1350 114 0 0 chr5 68241698 68241900 -84295359 + MTC LTR MaLR 1 202 -219 3 1105 286 338 2 8 chr5 68242106 68242226 -84295033 + MLT1A1 LTR MaLR 239 402 -6 3 1105 323 258 9 47 chr5 68242347 68242453 -84294806 + L1MB7 LINE L1 4947 5048 -1098 3 1105 1751 135 171 14 chr5 68242466 68242811 -84294448 + MTC LTR MaLR 1 399 -22 3 1105 764 273 134 32 chr5 68242849 68243287 -84293972 + L1MB7 LINE L1 5088 5585 -599 3 1105 1244 90 67 0 chr5 68243287 68243305 -84293954 - B2_Mm1a SINE B2 -3 190 162 3 1105 231 36 0 0 chr5 68243305 68243333 -84293926 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3 1105 1244 90 67 0 chr5 68243333 68243492 -84293767 - B2_Mm1a SINE B2 -32 161 2 3 1105 764 294 147 28 chr5 68243492 68243756 -84293503 + L1MB7 LINE L1 5586 5867 -317 3 1105 1184 55 0 7 chr5 68243763 68243910 -84293349 + B1_Mus1 SINE Alu 2 147 -1 3 1105 296 322 54 92 chr5 68244203 68244474 -84292785 + MLT2B3 LTR ERVL 187 488 -66 3 1105 234 91 0 0 chr5 68244477 68244510 -84292749 + (CATA)n Simple_repeat Simple_repeat 4 36 0 3 1105 212 86 29 0 chr5 68244512 68244547 -84292712 + (CACAC)n Simple_repeat Simple_repeat 1 36 0 3 1105 230 172 47 0 chr5 68245678 68245742 -84291517 + A-rich Low_complexity Low_complexity 2 68 0 3 1105 666 68 0 0 chr5 68245917 68246005 -84291254 + (GGAA)n Simple_repeat Simple_repeat 1 88 0 3 1105 329 295 29 0 chr5 68246213 68246318 -84290941 + PB1D7 SINE Alu 11 118 -2 3 1105 567 300 19 0 chr5 68246793 68246953 -84290306 - Lx9 LINE L1 -1014 6630 6468 3 1105 826 212 0 13 chr5 68247313 68247471 -84289788 + B3 SINE B2 1 156 -60 3 1105 522 0 0 0 chr5 68247472 68247530 -84289729 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 3 1105 676 74 0 0 chr5 68247530 68247625 -84289634 - B1_Mus2 SINE Alu -9 138 44 3 1105 1916 248 164 106 chr5 68248130 68248994 -84288265 + Lx6 LINE L1 6239 7368 -92 3 1105 264 30 0 0 chr5 68248994 68249027 -84288232 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1105 358 106 23 23 chr5 68249029 68249116 -84288143 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 3 1105 3393 64 7 5 chr5 68249223 68249661 -84287598 + L1_Mus3 LINE L1 6194 6632 -6 3 1105 22 56 0 0 chr5 68250023 68250059 -84287200 + AT_rich Low_complexity Low_complexity 1 36 0 3 1105 22 0 0 0 chr5 68250472 68250494 -84286765 + AT_rich Low_complexity Low_complexity 1 22 0 3 1105 747 87 0 0 chr5 68250591 68250695 -84286564 + (TA)n Simple_repeat Simple_repeat 1 104 0 3 1105 180 111 0 0 chr5 68250775 68250802 -84286457 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1105 845 313 21 55 chr5 68250824 68251243 -84286016 - Lx9 LINE L1 -201 7443 7039 3 1105 453 270 142 47 chr5 68251535 68251650 -84285609 + MER2 DNA MER2_type 89 235 -110 3 1105 225 0 0 0 chr5 68251650 68251675 -84285584 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1105 405 0 0 0 chr5 68251675 68251719 -84285540 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1105 453 270 142 47 chr5 68251719 68251835 -84285424 + MER2 DNA MER2_type 236 341 -4 3 1105 397 308 147 27 chr5 68252049 68252349 -84284910 - L1MC4 LINE L1 -381 7661 7326 3 1105 1717 165 122 32 chr5 68252417 68252762 -84284497 - ORR1C1 LTR MaLR 0 378 3 3 1105 23 0 0 0 chr5 68252953 68252976 -84284283 + AT_rich Low_complexity Low_complexity 1 23 0 3 1105 316 265 97 19 chr5 68252978 68253132 -84284127 - Lx7 LINE L1 -3 7693 7528 3 1105 4760 225 59 18 chr5 68253164 68254252 -84283007 - Lx7 LINE L1 -260 7436 6304 3 1105 22 0 0 0 chr5 68254565 68254587 -84282672 + AT_rich Low_complexity Low_complexity 1 22 0 3 1105 340 266 0 44 chr5 68254663 68254777 -84282482 - PB1D10 SINE Alu -8 109 1 3 1105 2685 98 116 7 chr5 68256150 68256583 -84280676 + Lx LINE L1 6175 6654 0 3 1105 675 94 0 0 chr5 68256673 68256769 -84280490 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 3 1105 250 321 29 81 chr5 68256771 68256944 -84280315 - MLT2B5 LTR ERVL -313 288 125 3 1105 276 311 39 39 chr5 68256829 68256956 -84280303 - MTEa LTR MaLR -166 213 87 3 1105 274 276 89 8 chr5 68257194 68257318 -84279941 + MIR SINE MIR 5 138 -124 3 1105 396 0 0 0 chr5 68257318 68257362 -84279897 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1105 1414 324 58 8 chr5 68257383 68257918 -84279341 + MTE-int LTR MaLR 864 1425 -155 3 1105 189 284 189 0 chr5 68257996 68258070 -84279189 - MER5A DNA MER1_type -101 88 1 3 1105 280 390 82 31 chr5 68259643 68259900 -84277359 - MLT1L LTR MaLR -242 368 99 3 1105 2064 217 32 149 chr5 68260460 68261152 -84276107 - RMER19C LTR ERVK 0 611 1 3 1105 227 320 167 11 chr5 68261179 68261466 -84275793 + L1M5 LINE L1 4490 4821 -1325 3 1105 374 333 48 89 chr5 68261846 68262014 -84275245 - RSINE1 SINE B4 -2 163 3 3 1105 471 271 0 113 chr5 68262073 68262153 -84275106 + B1_Mur2 SINE Alu 13 85 -64 3 1105 1058 164 32 0 chr5 68262153 68262342 -84274917 + B2_Mm2 SINE B2 1 195 0 3 1105 471 271 0 113 chr5 68262342 68262411 -84274848 + B1_Mur2 SINE Alu 86 145 -4 3 1105 1185 41 7 14 chr5 68262453 68262600 -84274659 + B1_Mm SINE Alu 2 147 0 3 1105 305 100 20 0 chr5 68262613 68262663 -84274596 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 3 1105 234 263 35 0 chr5 68262929 68262986 -84274273 + MLT1D LTR MaLR 5 63 -442 3 1105 1659 273 137 26 chr5 68263116 68264006 -84273253 + L1MD LINE L1 2825 3813 -2333 3 1105 207 0 0 0 chr5 68264659 68264682 -84272577 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 3 1105 393 250 42 0 chr5 68264683 68264779 -84272480 - B1F2 SINE Alu -8 141 42 3 1105 6173 215 68 26 chr5 68265524 68265591 -84271668 - Lx5 LINE L1 -3 7047 6967 3 1105 747 0 0 0 chr5 68265591 68265674 -84271585 + (TCCCC)n Simple_repeat Simple_repeat 1 83 0 3 1105 6173 184 45 24 chr5 68265674 68267528 -84269731 - Lx5 LINE L1 -84 6966 5067 3 1105 1754 105 4 18 chr5 68267521 68267793 -84269466 - Lx5 LINE L1 -2060 3817 3550 3 1105 499 296 12 53 chr5 68268026 68268197 -84269062 - RSINE1 SINE B4 0 165 2 3 1105 609 249 97 24 chr5 68268984 68269231 -84268028 - MER34 LTR ERV1 -200 342 78 3 1105 755 85 8 30 chr5 68269364 68269497 -84267762 + (TCTCC)n Simple_repeat Simple_repeat 2 131 0 3 1105 217 200 0 0 chr5 68269498 68269533 -84267726 + polypyrimidine Low_complexity Low_complexity 3 37 0 3 1105 3139 191 52 3 chr5 68269533 68270129 -84267130 - RMER1B Other Other -13 1053 239 3 1105 2293 85 101 87 chr5 68270234 68270660 -84266599 + Lx LINE L1 6220 6651 -3 3 1105 180 0 0 0 chr5 68270722 68270742 -84266517 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 3 1105 207 0 0 0 chr5 68271075 68271098 -84266161 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1105 2692 100 11 0 chr5 68271100 68271481 -84265778 - L1_Mus3 LINE L1 -15 6623 6239 3 1105 277 274 36 0 chr5 68271721 68271805 -84265454 - MLT1J LTR MaLR -179 333 247 3 1105 188 135 0 26 chr5 68272513 68272551 -84264708 + (TATG)n Simple_repeat Simple_repeat 4 40 0 3 1105 968 255 20 63 chr5 68272554 68272855 -84264404 - B4A SINE B4 0 292 5 3 1105 255 256 88 11 chr5 68272876 68272967 -84264292 - MLT1J LTR MaLR -230 282 185 3 1105 238 178 0 61 chr5 68273042 68273108 -84264151 - L1ME2z LINE L1 -113 6331 6270 3 1105 1989 172 99 5 chr5 68273205 68273590 -84263669 + MTC LTR MaLR 1 421 0 3 1105 287 299 108 16 chr5 68276563 68276692 -84260567 - MER63B DNA AcHobo -5 431 291 3 1105 1632 239 70 20 chr5 68276805 68276934 -84260325 - Lx9 LINE L1 0 7644 7513 3 1105 206 83 0 53 chr5 68276934 68276972 -84260287 + (CATA)n Simple_repeat Simple_repeat 3 38 0 3 1105 1632 239 70 20 chr5 68276972 68277298 -84259961 - Lx9 LINE L1 -132 7512 7166 3 1105 2124 247 63 66 chr5 68277304 68278005 -84259254 - RLTR40 LTR ERVK -118 699 1 3 1105 359 307 19 38 chr5 68278208 68278313 -84258946 - RSINE1 SINE B4 -61 104 2 3 1105 1916 168 46 35 chr5 68278616 68278791 -84258468 + ORR1D1 LTR MaLR 1 180 -194 3 1105 180 0 0 0 chr5 68278791 68278811 -84258448 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 1105 1916 168 46 35 chr5 68278811 68279005 -84258254 + ORR1D1 LTR MaLR 181 374 0 3 1105 278 254 9 42 chr5 68279112 68279211 -84258048 + MIR SINE MIR 36 122 -146 3 1105 290 67 22 0 chr5 68279220 68279265 -84257994 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 3 1105 651 356 0 39 chr5 68279283 68279517 -84257742 + Tigger5 DNA MER2_type 1 225 -2181 3 1105 317 241 0 54 chr5 68279550 68279642 -84257617 - MLT1A0 LTR MaLR -4 404 318 3 1105 353 250 118 129 chr5 68279786 68279956 -84257303 - MLT1A0 LTR MaLR -240 168 1 3 1105 1436 242 76 13 chr5 68280292 68280685 -84256574 - Lx6 LINE L1 -32 7428 7011 3 1105 4447 211 112 88 chr5 68281128 68281586 -84255673 - Lx6 LINE L1 -2 7458 7091 3 1105 408 104 0 0 chr5 68281586 68281653 -84255606 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1105 4447 211 112 88 chr5 68281653 68282634 -84254625 - Lx6 LINE L1 -370 7090 5983 3 1105 269 327 56 9 chr5 68282911 68283019 -84254240 - LTR33A_ LTR ERVL -403 128 16 3 1105 360 0 0 0 chr5 68283020 68283060 -84254199 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1105 210 171 0 0 chr5 68283170 68283205 -84254054 + A-rich Low_complexity Low_complexity 1 35 0 3 1105 5278 60 0 3 chr5 68284350 68285013 -84252246 - L1_Mus1 LINE L1 0 6567 5907 3 1105 6294 84 1 1 chr5 68285013 68285918 -84251341 + L1_Mm LINE L1 4111 5015 -868 3 1105 509 270 201 15 chr5 68285920 68286183 -84251076 - LTR50 LTR ERVL -40 755 444 3 1105 500 316 132 11 chr5 68286287 68286476 -84250783 + MLT1A0 LTR MaLR 133 344 -21 3 1105 33 66 0 0 chr5 68287015 68287076 -84250183 + AT_rich Low_complexity Low_complexity 1 61 0 3 1105 876 220 79 0 chr5 68287793 68287970 -84249289 + B3 SINE B2 16 206 -10 3 1105 453 268 21 0 chr5 68287976 68288073 -84249186 - MTEa LTR MaLR -262 117 19 3 1105 450 0 0 0 chr5 68288243 68288293 -84248966 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1105 288 335 96 54 chr5 68288300 68288467 -84248792 + MER2B DNA MER2_type 163 336 0 4 1106 270 337 17 17 chr5 68288571 68288749 -84248510 + L1M5 LINE L1 5624 5801 -323 4 1106 25 0 0 0 chr5 68289110 68289135 -84248124 + AT_rich Low_complexity Low_complexity 1 25 0 4 1106 1509 236 57 12 chr5 68289596 68289930 -84247329 - ORR1D1 LTR MaLR -24 350 2 4 1106 2539 183 82 10 chr5 68289930 68290501 -84246758 - ORR1D1-int LTR MaLR -52 1528 849 4 1106 447 221 92 85 chr5 68290404 68290557 -84246702 + MTD LTR MaLR 252 405 -14 4 1106 372 22 0 0 chr5 68290600 68290645 -84246614 + (CCAA)n Simple_repeat Simple_repeat 2 46 0 4 1106 1156 305 30 25 chr5 68290843 68291247 -84246012 - MLT1C LTR MaLR -2 465 60 4 1106 552 219 76 22 chr5 68292921 68293090 -84244169 - MLT1A1 LTR MaLR 0 408 173 4 1106 224 196 0 42 chr5 68293302 68293350 -84243909 + (TATG)n Simple_repeat Simple_repeat 3 48 0 4 1106 252 0 0 0 chr5 68294181 68294209 -84243050 + (TAA)n Simple_repeat Simple_repeat 3 30 0 4 1106 622 324 63 74 chr5 68294572 68294952 -84242307 + MLT1B LTR MaLR 15 390 0 4 1106 318 208 165 25 chr5 68295013 68295092 -84242167 - 4.5SRNA scRNA scRNA -3 91 2 4 1106 1852 226 46 16 chr5 68295094 68295526 -84241733 + Lx6 LINE L1 6990 7434 -26 4 1106 26 0 0 0 chr5 68295718 68295744 -84241515 + AT_rich Low_complexity Low_complexity 1 26 0 4 1106 7569 126 32 8 chr5 68296469 68296573 -84240686 - Lx2B LINE L1 -10 6990 6882 4 1106 198 71 0 0 chr5 68296573 68296601 -84240658 + (CCCA)n Simple_repeat Simple_repeat 2 29 0 4 1106 7569 126 32 8 chr5 68296601 68297502 -84239757 - Lx2B LINE L1 -119 6881 5956 4 1106 432 0 0 0 chr5 68297502 68297550 -84239709 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 4 1106 7569 126 32 8 chr5 68297550 68297735 -84239524 - Lx2B LINE L1 -1045 5955 5772 4 1106 315 0 0 0 chr5 68298813 68298848 -84238411 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 4 1106 568 281 12 20 chr5 68298853 68299013 -84238246 - RSINE1 SINE B4 0 165 7 4 1106 288 281 65 33 chr5 68299719 68299903 -84237356 - L1MC5 LINE L1 -446 7515 7326 4 1106 21 0 0 0 chr5 68300039 68300060 -84237199 + AT_rich Low_complexity Low_complexity 1 21 0 4 1106 835 151 240 0 chr5 68300373 68300552 -84236707 + URR1A DNA MER1_type 1 222 -4 4 1106 278 255 0 0 chr5 68300961 68301012 -84236247 - Lx7 LINE L1 -1063 6633 6583 4 1106 422 260 0 37 chr5 68301040 68301176 -84236083 + Lx7 LINE L1 7559 7689 -7 4 1106 36133 30 1 1 chr5 68301183 68307819 -84229440 - L1Md_T LINE L1 0 6585 1 4 1106 1489 60 0 43 chr5 68307826 68308034 -84229225 - L1Md_F2 LINE L1 -11 6571 6373 4 1106 3413 28 2 2 chr5 68308034 68308430 -84228829 - MTA_Mm LTR MaLR 0 396 1 4 1106 5752 26 0 0 chr5 68308430 68309125 -84228134 - MTA_Mm-int LTR MaLR 0 1098 404 4 1106 29970 71 4 1 chr5 68309125 68314174 -84223085 - L1Md_F LINE L1 -430 5453 389 4 1106 557 320 192 10 chr5 68314820 68315132 -84222127 - MLT1D LTR MaLR -64 441 73 4 1106 217 342 0 0 chr5 68315776 68315852 -84221407 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 4 1106 267 31 0 0 chr5 68315854 68315886 -84221373 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1106 347 338 141 0 chr5 68316005 68316203 -84221056 + L1M5 LINE L1 3535 3760 -2386 4 1106 22 35 0 0 chr5 68316475 68316504 -84220755 + AT_rich Low_complexity Low_complexity 1 29 0 4 1106 26 30 0 0 chr5 68316718 68316751 -84220508 + AT_rich Low_complexity Low_complexity 1 33 0 4 1106 570 253 149 26 chr5 68316767 68317035 -84220224 - Lx8 LINE L1 -36 7437 7137 4 1106 1947 308 57 3 chr5 68317029 68317118 -84220141 - Lx8 LINE L1 -525 6948 6859 4 1106 468 0 0 0 chr5 68317118 68317170 -84220089 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1106 1947 308 57 3 chr5 68317170 68317783 -84219476 - Lx8 LINE L1 -615 6858 6209 4 1106 360 0 0 0 chr5 68317786 68317826 -84219433 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1106 1693 239 75 31 chr5 68318070 68318923 -84218336 - Lx6 LINE L1 -2 7458 6285 4 1106 737 254 59 5 chr5 68319227 68319429 -84217830 - Lx6 LINE L1 -95 7365 7153 4 1106 25 83 0 0 chr5 68320449 68320509 -84216750 + AT_rich Low_complexity Low_complexity 1 60 0 4 1106 258 289 0 50 chr5 68320812 68320892 -84216367 - ID4_ SINE ID -7 76 1 4 1106 283 193 12 12 chr5 68322260 68322344 -84214915 + GA-rich Low_complexity Low_complexity 1 84 0 4 1106 326 335 0 43 chr5 68322379 68322554 -84214705 + GA-rich Low_complexity Low_complexity 3 169 0 4 1106 192 97 0 0 chr5 68322554 68322585 -84214674 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 1106 353 345 14 0 chr5 68322585 68322658 -84214601 + polypurine Low_complexity Low_complexity 72 146 0 4 1106 185 213 0 32 chr5 68322696 68322759 -84214500 + GA-rich Low_complexity Low_complexity 1 61 0 4 1106 292 273 30 0 chr5 68324459 68324525 -84212734 - ID4_ SINE ID -6 77 10 4 1106 262 284 85 17 chr5 68324532 68324650 -84212609 - PB1 SINE Alu -2 125 1 4 1106 230 261 14 0 chr5 68324661 68324730 -84212529 - L1MEf LINE L1 -4694 1506 1437 4 1106 189 0 0 0 chr5 68324730 68324751 -84212508 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1106 232 380 68 28 chr5 68325116 68325292 -84211967 + MIR SINE MIR 18 200 -68 4 1106 238 250 27 13 chr5 68325469 68325552 -84211707 - LTR41 LTR ERVL -2 766 673 4 1106 847 239 49 0 chr5 68325553 68325737 -84211522 + B3 SINE B2 11 203 -13 4 1106 695 305 67 48 chr5 68325741 68326054 -84211205 + MTEa LTR MaLR 1 319 -60 4 1106 298 219 31 15 chr5 68326084 68326149 -84211110 - PB1D10 SINE Alu -12 105 40 4 1106 259 358 47 92 chr5 68326834 68327172 -84210087 + Charlie18a DNA MER1_type 1 323 -19 4 1106 228 35 0 0 chr5 68327434 68327463 -84209796 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 4 1106 4920 131 4 0 chr5 68327815 68328541 -84208718 + Lx4A LINE L1 6323 7051 -7 4 1106 246 62 0 0 chr5 68329087 68329119 -84208140 + Lx4A LINE L1 6495 6526 -532 4 1106 507 134 0 0 chr5 68329167 68329249 -84208010 + (TC)n Simple_repeat Simple_repeat 1 82 0 4 1106 216 0 0 0 chr5 68329251 68329275 -84207984 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 4 1106 895 237 38 0 chr5 68329343 68329605 -84207654 + Lx9 LINE L1 7372 7643 -1 4 1106 188 306 67 56 chr5 68331034 68331124 -84206135 + MIR SINE MIR 20 110 -98 4 1106 281 280 54 25 chr5 68331379 68331591 -84205668 - L1MB8 LINE L1 -267 5911 5685 4 1106 207 186 0 0 chr5 68331849 68331892 -84205367 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 4 1106 4562 80 22 121 chr5 68332253 68333087 -84204172 - RMER17A LTR ERVK 0 751 1 4 1106 3138 65 7 9 chr5 68333115 68333535 -84203724 + L1_Mus3 LINE L1 6220 6638 0 4 1106 244 243 69 16 chr5 68333772 68333960 -84203299 + RMER17D LTR ERVK 242 439 -450 4 1106 190 369 66 36 chr5 68334350 68334516 -84202743 - L2b LINE L2 -199 3176 3006 4 1106 468 0 0 0 chr5 68335032 68335084 -84202175 + (CAA)n Simple_repeat Simple_repeat 3 54 0 4 1106 504 384 83 47 chr5 68335177 68335474 -84201785 + LTR33 LTR ERVL 91 401 -114 4 1106 331 302 63 45 chr5 68335474 68335585 -84201674 - PB1D10 SINE Alu 0 117 5 4 1106 504 384 83 47 chr5 68335585 68335694 -84201565 + LTR33 LTR ERVL 402 512 -3 4 1106 768 260 128 0 chr5 68336438 68336688 -84200571 - Lx6 LINE L1 0 7460 7179 4 1106 405 0 0 0 chr5 68336713 68336758 -84200501 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1106 195 114 0 0 chr5 68337238 68337273 -84199986 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1106 245 348 53 18 chr5 68337793 68337907 -84199352 + LTR40b LTR ERVL 1 118 -347 4 1106 367 321 158 16 chr5 68337937 68338190 -84199069 - B4 SINE B4 -2 290 2 4 1106 401 295 70 21 chr5 68338264 68338549 -84198710 + LTR40b LTR ERVL 159 457 -5 4 1106 374 162 14 0 chr5 68339222 68339296 -84197963 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1106 23 0 0 0 chr5 68339337 68339360 -84197899 + AT_rich Low_complexity Low_complexity 1 23 0 4 1106 360 313 26 0 chr5 68339863 68339978 -84197281 - Lx8 LINE L1 -1094 6379 6262 4 1106 522 200 0 0 chr5 68340867 68341187 -84196072 + (CA)n Simple_repeat Simple_repeat 1 320 0 4 1106 420 255 149 65 chr5 68342257 68342425 -84194834 + B3A SINE B2 1 182 -16 4 1106 4192 140 4 3 chr5 68342465 68343172 -84194087 - L1_Mm LINE L1 -212 5671 4964 4 1106 1781 48 0 0 chr5 68343172 68343402 -84193857 + L1_Mus4 LINE L1 5681 5910 -726 4 1106 262 272 63 8 chr5 68343415 68343428 -84193831 - L1_Mur2 LINE L1 -6036 676 664 4 1106 1214 108 0 0 chr5 68343428 68343613 -84193646 - L1_Mus4 LINE L1 0 6636 6452 4 1106 680 108 0 8 chr5 68343613 68343734 -84193525 - L1VL4 LINE L1 -5629 673 554 4 1106 842 263 34 34 chr5 68343780 68344162 -84193097 - L1_Mur3 LINE L1 -1403 4477 4096 4 1106 454 271 47 0 chr5 68344846 68344953 -84192306 - PB1D7 SINE Alu -8 112 1 4 1106 29 0 0 0 chr5 68344989 68345018 -84192241 + AT_rich Low_complexity Low_complexity 1 29 0 4 1106 24 53 0 0 chr5 68345101 68345139 -84192120 + AT_rich Low_complexity Low_complexity 1 38 0 4 1106 295 277 75 60 chr5 68345437 68345637 -84191622 + L1MC4 LINE L1 6800 7002 -1040 4 1106 234 0 0 0 chr5 68345703 68345729 -84191530 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1106 248 160 0 26 chr5 68345800 68345877 -84191382 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 4 1106 468 0 0 0 chr5 68345880 68345932 -84191327 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1106 243 266 0 27 chr5 68346358 68346470 -84190789 + (CAAA)n Simple_repeat Simple_repeat 3 111 0 4 1106 2909 120 16 0 chr5 68347235 68347677 -84189582 - Lx4A LINE L1 -302 6756 6308 4 1106 855 166 94 6 chr5 68347673 68347843 -84189416 + Lx4A LINE L1 6830 7014 -44 4 1106 1654 143 49 3 chr5 68347843 68348131 -84189128 + ORR1A2 LTR MaLR 46 327 0 4 1106 594 41 0 0 chr5 68348882 68348955 -84188304 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 4 1106 305 308 0 0 chr5 68348964 68349042 -84188217 - ID4_ SINE ID -4 79 2 4 1106 528 287 137 33 chr5 68349114 68349861 -84187398 + L1MA9 LINE L1 4890 5721 -570 4 1106 888 158 30 0 chr5 68349857 68349873 -84187386 + Lx5 LINE L1 5814 5829 -1221 5 1106 216 0 0 0 chr5 68349873 68349897 -84187362 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1106 888 158 30 0 chr5 68349897 68350045 -84187214 + Lx5 LINE L1 5830 5982 -1068 5 1106 2205 206 55 28 chr5 68350057 68350565 -84186694 - RLTR11A LTR ERVK 0 528 7 5 1106 2210 272 87 80 chr5 68350569 68351481 -84185778 + Lx5 LINE L1 6116 7033 -17 5 1106 432 0 0 0 chr5 68351490 68351538 -84185721 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1106 342 174 0 0 chr5 68351538 68351607 -84185652 + L1MA9 LINE L1 5725 5793 -396 4 1106 522 0 0 0 chr5 68351653 68351711 -84185548 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 5 1106 547 277 94 14 chr5 68351717 68352072 -84185187 + L1MA9 LINE L1 5797 6190 -113 4 1106 316 353 65 14 chr5 68352302 68352440 -84184819 + RSINE1 SINE B4 4 148 -17 5 1106 333 0 0 0 chr5 68352447 68352484 -84184775 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1106 21 0 0 0 chr5 68352489 68352510 -84184749 + AT_rich Low_complexity Low_complexity 1 21 0 5 1106 189 315 109 0 chr5 68352552 68352644 -84184615 + MIRb SINE MIR 101 202 -66 5 1106 543 16 0 0 chr5 68354349 68354413 -84182846 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1106 363 295 107 20 chr5 68354573 68354770 -84182489 - Lx8 LINE L1 -28 7445 7232 5 1106 472 311 0 0 chr5 68354856 68354959 -84182300 - RSINE1 SINE B4 -18 147 45 5 1106 458 253 96 85 chr5 68355559 68355736 -84181523 + Arthur1B DNA Tip100 117 295 -930 5 1106 378 304 137 31 chr5 68355884 68356139 -84181120 + L1M5 LINE L1 5482 5763 -431 5 1106 303 85 0 0 chr5 68356176 68356223 -84181036 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1106 237 83 0 0 chr5 68356231 68356267 -84180992 + (GGGAGA)n Simple_repeat Simple_repeat 1 36 0 5 1106 35 0 0 0 chr5 68357157 68357192 -84180067 + AT_rich Low_complexity Low_complexity 1 35 0 5 1106 1206 62 0 0 chr5 68357204 68357350 -84179909 - B1_Mus1 SINE Alu 0 148 3 5 1106 3710 85 46 28 chr5 68357351 68357933 -84179326 - Lx3_Mus LINE L1 -21 6988 6396 5 1106 2253 74 10 0 chr5 68357932 68358242 -84179017 - L1_Mur1 LINE L1 -7 5879 5567 5 1106 1182 87 0 6 chr5 68358266 68358440 -84178819 - L1_Mus4 LINE L1 -5 6631 6459 5 1106 608 51 0 0 chr5 68358442 68358521 -84178738 + Lx LINE L1 5931 6009 -645 5 1106 1117 65 58 0 chr5 68358522 68358676 -84178583 + L1_Mus4 LINE L1 6162 6324 -312 5 1106 2859 43 3 3 chr5 68359689 68360035 -84177224 - ORR1A0 LTR MaLR 0 346 1 5 1106 369 0 0 0 chr5 68360588 68360629 -84176630 + (TAA)n Simple_repeat Simple_repeat 3 43 0 5 1106 327 123 0 0 chr5 68362106 68362150 -84175109 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1106 324 64 0 0 chr5 68362150 68362197 -84175062 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1106 327 123 0 0 chr5 68362197 68362217 -84175042 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1106 252 86 0 0 chr5 68362485 68362520 -84174739 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 5 1106 439 301 28 14 chr5 68362579 68362724 -84174535 - B1F1 SINE Alu -2 147 1 5 1106 190 278 0 18 chr5 68364870 68364925 -84172334 - MIR SINE MIR 0 262 209 5 1106 387 0 0 0 chr5 68366447 68366490 -84170769 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 5 1106 591 231 8 8 chr5 68366492 68366623 -84170636 + Lx8 LINE L1 6973 7103 -370 5 1106 389 283 31 8 chr5 68368101 68368229 -84169030 + Lx8 LINE L1 6976 7106 -367 5 1106 182 37 37 0 chr5 68368233 68368260 -84168999 + (TGG)n Simple_repeat Simple_repeat 2 29 0 5 1106 317 229 0 0 chr5 68369705 68369766 -84167493 + RMER30 DNA MER1_type 134 194 -8 5 1106 1386 214 125 133 chr5 68369918 68370413 -84166846 + RMER19C LTR ERVK 1 491 -120 5 1106 216 0 0 0 chr5 68370429 68370453 -84166806 + (CAA)n Simple_repeat Simple_repeat 2 25 0 5 1106 878 264 56 22 chr5 68370763 68371030 -84166229 - RLTR16 LTR ERVK -207 298 23 5 1106 728 192 0 0 chr5 68371033 68371163 -84166096 + RMER19C LTR ERVK 482 611 0 5 1106 1255 297 86 12 chr5 68371177 68371668 -84165591 + Lx8 LINE L1 6946 7472 -1 5 1106 387 41 0 0 chr5 68371769 68371818 -84165441 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1106 928 308 55 25 chr5 68372332 68372671 -84164588 - ORR1E LTR MaLR 0 379 1 5 1106 197 407 37 0 chr5 68372866 68372974 -84164285 - L2 LINE L2 -339 3080 2969 5 1106 289 350 80 58 chr5 68373008 68373372 -84163887 - L2 LINE L2 -915 2504 2133 5 1106 252 0 0 0 chr5 68373581 68373609 -84163650 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1106 214 363 106 0 chr5 68374145 68374258 -84163001 - MIRc SINE MIR -123 145 21 5 1106 207 0 0 0 chr5 68374568 68374591 -84162668 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1106 273 0 0 0 chr5 68374905 68374936 -84162323 - L1Md_F2 LINE L1 -140 6442 6412 5 1106 186 143 0 0 chr5 68374939 68374974 -84162285 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1106 25675 91 21 2 chr5 68375062 68379715 -84157544 - L1_Mus2 LINE L1 0 6566 1825 5 1106 3459 94 0 0 chr5 68380286 68380818 -84156441 - L1_Mus2 LINE L1 -4043 1840 1309 5 1106 1187 319 82 52 chr5 68381014 68381549 -84155710 + MER21B LTR ERV1 293 843 -20 5 1106 1100 124 0 6 chr5 68382361 68382540 -84154719 + (TTC)n Simple_repeat Simple_repeat 2 179 0 5 1106 214 286 122 0 chr5 68382714 68382812 -84154447 - MIR SINE MIR -116 146 37 5 1106 1023 329 88 0 chr5 68383272 68383704 -84153555 - Lx8 LINE L1 -292 7181 6712 5 1106 24 32 0 0 chr5 68383728 68383759 -84153500 + AT_rich Low_complexity Low_complexity 1 31 0 5 1106 461 58 14 0 chr5 68383759 68383828 -84153431 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1106 468 336 87 0 chr5 68383834 68383983 -84153276 - B3A SINE B2 -30 168 7 5 1106 1104 272 28 14 chr5 68383994 68384285 -84152974 - Lx8 LINE L1 -756 6717 6423 5 1106 2419 103 0 0 chr5 68384311 68384661 -84152598 - L1_Mm LINE L1 -10 5873 5524 5 1106 5222 46 0 0 chr5 68384663 68385293 -84151966 + L1_Mus1 LINE L1 5924 6553 -14 5 1106 375 23 0 0 chr5 68385867 68385911 -84151348 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1106 1007 84 65 0 chr5 68385954 68386109 -84151150 - Lx2 LINE L1 -4 6993 6829 5 1106 3401 124 86 33 chr5 68386138 68386711 -84150548 - Lx2 LINE L1 0 6997 6395 5 1106 28 0 0 0 chr5 68386737 68386765 -84150494 + AT_rich Low_complexity Low_complexity 1 28 0 5 1106 193 362 14 0 chr5 68386966 68387035 -84150224 + MIR SINE MIR 164 233 -29 5 1106 974 262 133 3 chr5 68387035 68387357 -84149902 - MER57E1 LTR ERV1 0 372 9 5 1106 8030 129 45 8 chr5 68387448 68389070 -84148189 - Lx2B LINE L1 0 7000 5326 5 1106 251 268 136 38 chr5 68390154 68390286 -84146973 + RMER13A LTR ERVK 253 397 -463 5 1106 3963 92 14 26 chr5 68390287 68390913 -84146346 + Lx2 LINE L1 6337 6955 -42 5 1106 1504 84 91 30 chr5 68390913 68391145 -84146114 + L1_Mus2 LINE L1 6321 6566 0 5 1106 3416 125 12 55 chr5 68391145 68391211 -84146048 + Lx LINE L1 6607 6654 0 5 1106 210 239 0 0 chr5 68391659 68391705 -84145554 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 5 1106 348 301 110 171 chr5 68392019 68392283 -84144976 + MLT1A0 LTR MaLR 47 294 -71 5 1106 225 277 15 0 chr5 68392555 68392620 -84144639 - L1MC1 LINE L1 -280 6053 5988 5 1106 1634 214 29 9 chr5 68392662 68392978 -84144281 + MTD LTR MaLR 98 419 0 5 1106 427 346 128 11 chr5 68393204 68393578 -84143681 + L2 LINE L2 1924 2341 -1078 5 1106 606 28 0 0 chr5 68393742 68393814 -84143445 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1106 444 82 0 0 chr5 68394261 68394322 -84142937 + (A)n Simple_repeat Simple_repeat 1 61 0 5 1106 213 232 0 18 chr5 68395669 68395726 -84141533 + T-rich Low_complexity Low_complexity 1 56 0 5 1106 252 333 28 56 chr5 68395785 68395963 -84141296 - MLT1A1 LTR MaLR -235 173 1 5 1106 1019 258 8 36 chr5 68396216 68396465 -84140794 - MTEa LTR MaLR 0 379 138 5 1106 219 69 0 0 chr5 68396465 68396494 -84140765 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1106 432 0 0 0 chr5 68396531 68396579 -84140680 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1106 1357 188 4 4 chr5 68396632 68396867 -84140392 + RMER10B LTR ERVL 1 235 -163 5 1106 270 131 0 21 chr5 68396860 68396907 -84140352 + RMER10B LTR ERVL 353 398 0 5 1106 251 287 102 11 chr5 68396908 68396996 -84140263 - MTEa LTR MaLR -278 101 6 5 1106 700 296 37 57 chr5 68397331 68397628 -84139631 + B4A SINE B4 2 292 0 5 1106 24 32 0 0 chr5 68397689 68397720 -84139539 + AT_rich Low_complexity Low_complexity 1 31 0 5 1106 244 336 25 49 chr5 68398235 68398357 -84138902 + L4 LINE RTE 1902 2020 -9 5 1106 252 300 0 12 chr5 68399184 68399265 -84137994 + GA-rich Low_complexity Low_complexity 2 81 0 5 1106 200 227 0 22 chr5 68399741 68399786 -84137473 + GA-rich Low_complexity Low_complexity 4 47 0 5 1106 487 43 29 0 chr5 68400278 68400348 -84136911 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1106 234 0 0 0 chr5 68401225 68401251 -84136008 + (CAA)n Simple_repeat Simple_repeat 3 28 0 5 1106 459 0 0 0 chr5 68403128 68403179 -84134080 + (GA)n Simple_repeat Simple_repeat 1 51 0 5 1106 400 318 83 32 chr5 68403219 68403437 -84133822 + MIR SINE MIR 30 258 -4 5 1106 198 0 0 0 chr5 68403584 68403606 -84133653 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1106 189 107 0 0 chr5 68403736 68403764 -84133495 + (CAG)n Simple_repeat Simple_repeat 1 28 0 5 1106 366 320 74 66 chr5 68405886 68406188 -84131071 - B4A SINE B4 -16 276 7 5 1106 16156 98 2 26 chr5 68406517 68410290 -84126969 - L1Md_F2 LINE L1 -6 6576 3031 5 1106 281 201 34 48 chr5 68410290 68410395 -84126864 - RLTR12A LTR ERVK -435 133 24 5 1106 738 62 0 0 chr5 68410985 68411081 -84126178 + (GAA)n Simple_repeat Simple_repeat 3 98 0 5 1106 979 142 11 0 chr5 68411086 68411262 -84125997 + GA-rich Low_complexity Low_complexity 3 180 0 5 1106 399 155 48 0 chr5 68413919 68414003 -84123256 - Lx9 LINE L1 -2 7642 7555 5 1106 1258 195 34 8 chr5 68414003 68414267 -84122992 - Lx9 LINE L1 -308 7336 7066 5 1106 631 229 100 19 chr5 68414430 68414580 -84122679 + Lx8 LINE L1 7169 7334 -139 5 1106 257 27 0 51 chr5 68414580 68414619 -84122640 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1106 1919 137 0 0 chr5 68416357 68416642 -84120617 + MTC LTR MaLR 137 421 0 6 1106 437 308 158 36 chr5 68416673 68416895 -84120364 - Kanga1d DNA Tc2 -255 354 106 6 1107 227 305 84 0 chr5 68419928 68420023 -84117236 + L2a LINE L2 3322 3424 -2 6 1107 28 29 0 0 chr5 68420532 68420567 -84116692 + AT_rich Low_complexity Low_complexity 1 35 0 6 1107 5026 104 8 15 chr5 68420568 68421309 -84115950 - Lx LINE L1 0 6654 5919 6 1107 1167 299 61 9 chr5 68421368 68421796 -84115463 + Lx8 LINE L1 6685 7134 -339 6 1107 280 341 58 15 chr5 68422310 68422447 -84114812 + 7SK RNA RNA 7 149 -182 6 1107 874 124 0 49 chr5 68427461 68427605 -84109654 - B1_Mus1 SINE Alu -11 137 1 6 1107 299 297 39 43 chr5 68428436 68428668 -84108591 - L1MB8 LINE L1 -12 6166 5936 6 1107 383 299 116 41 chr5 68428701 68429064 -84108195 - L1MA6 LINE L1 -237 6063 5674 6 1107 1654 278 19 29 chr5 68429098 68429684 -84107575 - L1M3c LINE L1 -3454 3391 2812 6 1107 919 275 24 12 chr5 68430070 68430317 -84106942 - B4 SINE B4 -1 291 42 6 1107 502 332 52 12 chr5 68430416 68430970 -84106289 - L1M3c LINE L1 -4247 2602 2023 6 1107 1225 299 31 14 chr5 68430976 68431464 -84105795 + L1M3c LINE L1 1554 2049 -4730 6 1107 25 90 0 0 chr5 68431563 68431630 -84105629 + AT_rich Low_complexity Low_complexity 1 67 0 6 1107 667 279 177 0 chr5 68432595 68432849 -84104410 - MLT1D LTR MaLR -7 498 200 6 1107 411 296 69 126 chr5 68432910 68433243 -84104016 + ORR1E LTR MaLR 27 340 -19 6 1107 981 358 68 30 chr5 68433255 68433846 -84103413 + ORR1E-int LTR MaLR 3 615 -965 6 1107 413 60 45 0 chr5 68434041 68434108 -84103151 + (TTTTA)n Simple_repeat Simple_repeat 5 74 0 6 1107 1148 349 72 51 chr5 68435890 68436670 -84100589 + MLT-int LTR MaLR 38 833 -902 6 1107 213 178 0 0 chr5 68437029 68437074 -84100185 + CT-rich Low_complexity Low_complexity 2 46 0 6 1107 3246 105 48 2 chr5 68437080 68437584 -84099675 - Lx3B LINE L1 -201 6772 6246 6 1107 1831 216 180 41 chr5 68437736 68438048 -84099211 - Lx7 LINE L1 0 7696 7328 6 1107 288 77 0 0 chr5 68438048 68438087 -84099172 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 6 1107 1831 216 180 41 chr5 68438087 68438431 -84098828 - Lx7 LINE L1 -369 7327 6949 6 1107 234 91 0 0 chr5 68439319 68439352 -84097907 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 6 1107 807 199 128 4 chr5 68439508 68439781 -84097478 + Lx9 LINE L1 7337 7643 -1 6 1107 252 77 0 0 chr5 68440724 68440763 -84096496 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 6 1107 604 154 0 16 chr5 68441487 68441612 -84095647 + CT-rich Low_complexity Low_complexity 2 124 0 6 1107 1496 260 138 50 chr5 68441620 68442259 -84095000 - Lx6 LINE L1 -26 7434 6740 6 1107 825 168 112 28 chr5 68442784 68442998 -84094261 - Lx7 LINE L1 -1 7695 7464 6 1107 1793 190 87 15 chr5 68443002 68443414 -84093845 + RMER10A LTR ERVL 1 442 0 6 1107 377 192 0 49 chr5 68443414 68443484 -84093775 - Lx6 LINE L1 -264 7196 7129 6 1107 279 0 0 0 chr5 68443484 68443515 -84093744 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1107 377 192 0 49 chr5 68443515 68443526 -84093733 - Lx6 LINE L1 -332 7128 7119 6 1107 381 232 0 0 chr5 68443526 68443621 -84093638 + (TA)n Simple_repeat Simple_repeat 2 96 0 6 1107 1377 181 43 94 chr5 68443627 68443956 -84093303 - Lx6 LINE L1 -338 7122 6811 6 1107 494 103 0 13 chr5 68443958 68444037 -84093222 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 6 1107 1239 68 0 7 chr5 68444037 68444185 -84093074 - B1_Mus2 SINE Alu 0 147 1 6 1107 710 75 0 9 chr5 68445160 68445267 -84091992 + (TG)n Simple_repeat Simple_repeat 1 106 0 6 1107 348 312 155 8 chr5 68445267 68445396 -84091863 - B3A SINE B2 -50 148 1 6 1107 235 282 27 27 chr5 68446970 68447043 -84090216 + MER63B DNA AcHobo 315 387 -49 6 1107 754 343 113 58 chr5 68448172 68448704 -84088555 - LTR16E2 LTR ERVL -7 561 1 6 1107 1224 91 0 5 chr5 68448709 68448928 -84088331 + (CA)n Simple_repeat Simple_repeat 1 218 0 6 1107 238 219 31 15 chr5 68448930 68448995 -84088264 + G-rich Low_complexity Low_complexity 4 69 0 6 1107 2150 95 42 13 chr5 68449494 68449804 -84087455 + ORR1A2 LTR MaLR 1 319 -8 6 1107 6766 71 110 1 chr5 68450782 68451693 -84085566 + L1Md_F2 LINE L1 4575 5584 -299 6 1107 8235 61 2 14 chr5 68451695 68452703 -84084556 + L1Md_F2 LINE L1 5587 6582 0 6 1107 258 320 90 0 chr5 68452748 68452848 -84084411 + MIR SINE MIR 120 228 -34 6 1107 967 146 45 72 chr5 68453489 68453648 -84083611 - RMER17A LTR ERVK -175 634 470 6 1107 1029 90 17 0 chr5 68453648 68453825 -84083434 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1107 2351 78 6 39 chr5 68453825 68454178 -84083081 - RMER17A LTR ERVK -409 342 1 6 1107 1975 201 135 25 chr5 68455148 68455667 -84081592 - L1_Rod LINE L1 -314 5533 4958 6 1107 485 163 102 0 chr5 68455669 68455767 -84081492 + Lx9 LINE L1 7387 7494 -150 6 1107 312 319 116 16 chr5 68456295 68456553 -84080706 - L1MC4 LINE L1 -505 7537 7254 6 1107 333 284 52 10 chr5 68456668 68456764 -84080495 + B1F1 SINE Alu 7 106 -43 6 1107 547 300 95 20 chr5 68456798 68457155 -84080104 - L1MC4 LINE L1 -907 7135 6752 6 1107 9760 82 10 7 chr5 68457476 68458806 -84078453 - Lx3_Mus LINE L1 -4 7005 5672 6 1107 4323 86 10 2 chr5 68458805 68459388 -84077871 + Lx3_Mus LINE L1 5087 5674 -212 6 1107 551 200 0 22 chr5 68459507 68459691 -84077568 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1107 273 179 0 0 chr5 68459705 68459789 -84077470 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 1107 490 143 16 25 chr5 68459788 68459910 -84077349 + (TA)n Simple_repeat Simple_repeat 1 121 0 6 1107 513 214 98 0 chr5 68460402 68460514 -84076745 + RSINE1 SINE B4 2 124 -41 6 1107 390 239 51 29 chr5 68461002 68461140 -84076119 + MER5A1 DNA MER1_type 26 166 0 6 1107 380 308 105 38 chr5 68461189 68461438 -84075821 - MLT1A1 LTR MaLR -21 344 86 6 1107 334 266 75 85 chr5 68461947 68462223 -84075036 + MER102a DNA MER1_type 80 330 0 6 1107 537 134 0 39 chr5 68463485 68463640 -84073619 + (TA)n Simple_repeat Simple_repeat 1 149 0 6 1107 523 274 87 114 chr5 68464204 68464571 -84072688 - L1MA8 LINE L1 -1 6290 5934 6 1107 591 388 68 63 chr5 68464856 68465426 -84071833 - MER115 DNA Tip100 -3 690 118 6 1107 783 130 14 7 chr5 68465486 68465633 -84071626 + CT-rich Low_complexity Low_complexity 3 150 0 6 1107 238 36 0 0 chr5 68465633 68465661 -84071598 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 6 1107 693 0 0 0 chr5 68465661 68465738 -84071521 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 6 1107 728 315 81 38 chr5 68465738 68466184 -84071075 - Lx8 LINE L1 -21 7452 6988 6 1107 300 333 137 15 chr5 68467415 68467546 -84069713 + HAL1-3A_ME LINE L1 2293 2439 -419 6 1107 1932 109 231 0 chr5 68468227 68468538 -84068721 + L1VL2 LINE L1 290 672 -5663 6 1107 26 50 0 0 chr5 68468949 68468989 -84068270 + AT_rich Low_complexity Low_complexity 1 40 0 6 1107 261 83 0 0 chr5 68470330 68470366 -84066893 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1107 551 309 217 0 chr5 68470377 68470607 -84066652 - B4A SINE B4 -11 281 2 6 1107 228 256 32 32 chr5 68470737 68470830 -84066429 - L1MA8 LINE L1 -81 6210 6118 6 1107 535 314 184 29 chr5 68470854 68471304 -84065955 - Lx8 LINE L1 -6 7467 6948 6 1107 2352 64 11 0 chr5 68471319 68471601 -84065658 + L1_Mus1 LINE L1 6274 6558 -9 6 1107 9785 49 0 1 chr5 68471601 68472946 -84064313 - L1Md_F2 LINE L1 -543 6039 4696 6 1107 4814 36 34 0 chr5 68472946 68473501 -84063758 + L1Md_F2 LINE L1 6008 6581 -1 6 1107 1168 89 0 20 chr5 68473528 68473677 -84063582 + B1_Mus2 SINE Alu 2 147 0 6 1107 597 286 88 21 chr5 68473739 68473932 -84063327 - Lx8 LINE L1 -561 6912 6707 6 1107 335 320 15 23 chr5 68474398 68474529 -84062730 - MER5A1 DNA MER1_type -23 143 14 6 1107 790 66 19 0 chr5 68474692 68474798 -84062461 - MT2C_Mm LTR ERVL 0 475 368 6 1107 5184 58 13 0 chr5 68474798 68475431 -84061828 - MERVL-int LTR ERVL -4844 641 1 6 1107 4280 36 8 0 chr5 68475431 68475902 -84061357 - MT2C_Mm LTR ERVL 0 475 1 6 1107 266 273 65 20 chr5 68476709 68476862 -84060397 + L1MA4 LINE L1 5936 6095 -205 6 1107 359 287 31 21 chr5 68476866 68476962 -84060297 + RSINE1 SINE B4 16 112 -53 6 1107 503 312 121 28 chr5 68477003 68477259 -84060000 + B4A SINE B4 7 265 -27 6 1107 22 56 0 0 chr5 68478395 68478431 -84058828 + AT_rich Low_complexity Low_complexity 1 36 0 6 1107 182 309 36 18 chr5 68478757 68478813 -84058446 - MER5A1 DNA MER1_type -107 59 9 6 1107 409 280 140 55 chr5 68479771 68479971 -84057288 + MER20 DNA MER1_type 2 218 -1 6 1107 297 51 0 0 chr5 68480222 68480261 -84056998 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 6 1107 21 36 0 0 chr5 68480647 68480675 -84056584 + AT_rich Low_complexity Low_complexity 1 28 0 6 1107 419 301 78 42 chr5 68481168 68481310 -84055949 - B4 SINE B4 0 292 146 6 1107 531 0 0 0 chr5 68481310 68481369 -84055890 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 6 1107 879 291 20 24 chr5 68481374 68481670 -84055589 + Lx8 LINE L1 6857 7151 -322 6 1107 888 182 0 7 chr5 68481685 68481823 -84055436 - B1_Mus2 SINE Alu -6 141 5 6 1107 3384 83 0 2 chr5 68481973 68482381 -84054878 - MTB_Mm LTR MaLR 0 407 1 6 1107 227 103 26 0 chr5 68482495 68482534 -84054725 + (TCC)n Simple_repeat Simple_repeat 3 42 0 6 1107 1047 123 0 0 chr5 68482540 68482686 -84054573 - B2_Mm2 SINE B2 -39 156 11 6 1107 488 120 10 0 chr5 68482968 68483068 -84054191 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 6 1107 465 332 49 71 chr5 68483112 68483336 -84053923 + MLT1D LTR MaLR 1 219 -408 6 1107 387 0 0 0 chr5 68484332 68484375 -84052884 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1107 234 191 0 0 chr5 68484375 68484422 -84052837 + (TATG)n Simple_repeat Simple_repeat 3 49 0 6 1107 644 182 175 6 chr5 68484422 68484477 -84052782 - Lx4B LINE L1 -7 7051 6973 6 1107 186 43 0 0 chr5 68484477 68484500 -84052759 + (TCTCC)n Simple_repeat Simple_repeat 3 25 0 6 1107 644 166 49 2 chr5 68484500 68484631 -84052628 - Lx4B LINE L1 -86 6972 6747 6 1107 881 236 79 47 chr5 68485290 68485585 -84051674 + MTD LTR MaLR 1 419 0 6 1107 444 356 70 44 chr5 68485768 68485997 -84051262 - MLT2B3 LTR ERVL -289 265 31 6 1107 281 180 40 0 chr5 68486088 68486138 -84051121 + B1F SINE Alu 1 52 -97 6 1107 183 299 70 56 chr5 68488141 68488212 -84049047 + MIR SINE MIR 40 111 -97 6 1107 300 111 0 0 chr5 68488742 68488787 -84048472 + (ATG)n Simple_repeat Simple_repeat 1 45 0 6 1107 26 30 0 0 chr5 68489472 68489505 -84047754 + AT_rich Low_complexity Low_complexity 1 33 0 7 1107 209 374 47 0 chr5 68489633 68489740 -84047519 - MER91C DNA Tip100 -14 126 15 7 1107 1130 112 0 6 chr5 68490476 68490655 -84046604 + (GAA)n Simple_repeat Simple_repeat 1 178 0 7 1107 354 98 0 0 chr5 68490656 68490707 -84046552 + (GGA)n Simple_repeat Simple_repeat 1 51 0 7 1107 38845 30 0 1 chr5 68490790 68497211 -84040048 - L1Md_T LINE L1 0 6585 71 7 1107 299 25 0 24 chr5 68497536 68497577 -84039682 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 7 1107 960 173 0 0 chr5 68497579 68497758 -84039501 + CT-rich Low_complexity Low_complexity 2 180 0 7 1107 1274 55 0 0 chr5 68497769 68497915 -84039344 - B1_Mm SINE Alu -1 146 1 7 1107 1986 200 60 19 chr5 68497998 68498480 -84038779 - RMER4B LTR ERVK -9 576 60 7 1107 195 69 0 0 chr5 68498480 68498509 -84038750 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 7 1107 1986 194 72 22 chr5 68498509 68498550 -84038709 - RMER4B LTR ERVK -526 59 3 7 1107 279 331 109 16 chr5 68498595 68498723 -84038536 - MIRb SINE MIR -48 220 75 7 1107 396 0 0 0 chr5 68498723 68498767 -84038492 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1107 279 331 109 16 chr5 68498767 68498822 -84038437 - MIRb SINE MIR -194 74 20 7 1107 241 324 28 9 chr5 68499092 68499201 -84038058 + MTEb LTR MaLR 268 378 -1 7 1107 953 154 211 0 chr5 68499268 68499443 -84037816 - B3 SINE B2 -2 214 3 7 1107 294 276 13 13 chr5 68499844 68499921 -84037338 + Lx8 LINE L1 7242 7318 -155 7 1107 21 57 0 0 chr5 68501286 68501321 -84035938 + AT_rich Low_complexity Low_complexity 1 35 0 1 1107 671 245 110 40 chr5 68503346 68503546 -84033713 + ID_B1 SINE B4 3 216 -8 2 1107 4147 53 0 6 chr5 68504991 68505503 -84031756 - L1Md_F2 LINE L1 -12 6570 6062 3 1107 188 304 0 81 chr5 68505656 68505742 -84031517 - L3 LINE CR1 -7 4482 4404 4 1107 290 293 34 25 chr5 68505747 68505866 -84031393 - L1M4 LINE L1 -548 5626 5507 5 1107 742 276 28 5 chr5 68505978 68506189 -84031070 - B3 SINE B2 0 216 1 6 1107 25 51 0 0 chr5 68506377 68506416 -84030843 + AT_rich Low_complexity Low_complexity 1 39 0 7 1107 2867 71 7 22 chr5 68506416 68506821 -84030438 + MTB_Mm LTR MaLR 1 399 -8 8 1107 359 371 57 0 chr5 68506852 68506976 -84030283 - B1F2 SINE Alu -9 140 10 9 1107 411 21 0 0 chr5 68507070 68507118 -84030141 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 1 1107 809 68 0 0 chr5 68507118 68507221 -84030038 - B1_Mm SINE Alu -11 136 34 1 1107 266 189 20 0 chr5 68507801 68507856 -84029403 - MLT1H1 LTR MaLR 0 560 500 1 1107 3913 201 33 1 chr5 68507981 68508713 -84028546 - Lx5 LINE L1 -8 7042 6288 1 1107 646 291 40 97 chr5 68508915 68509329 -84027930 - Lx9 LINE L1 -1685 5959 5532 1 1107 264 392 33 16 chr5 68509416 68509538 -84027721 - MLT1H2 LTR MaLR -304 185 62 1 1107 295 239 0 82 chr5 68510262 68510295 -84026964 - B4 SINE B4 -223 69 40 1 1107 1471 211 49 62 chr5 68510295 68510684 -84026575 - ORR1C2 LTR MaLR 0 384 1 1 1107 295 239 0 82 chr5 68510684 68510723 -84026536 - B4 SINE B4 -253 39 3 1 1107 3532 162 31 2 chr5 68510930 68511519 -84025740 + RMER19C LTR ERVK 1 606 -5 1 1107 1131 67 0 0 chr5 68511714 68511849 -84025410 - B1_Mm SINE Alu -12 135 1 1 1107 180 0 0 0 chr5 68512798 68512818 -84024441 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1107 205 352 53 42 chr5 68513793 68513888 -84023371 - L2c LINE L2 -206 3181 3086 2 1107 261 0 0 0 chr5 68514052 68514081 -84023178 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1107 304 234 3 40 chr5 68515337 68515433 -84021826 + MTE2a LTR MaLR 276 369 -10 2 1107 522 0 0 0 chr5 68515433 68515491 -84021768 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1107 466 329 114 0 chr5 68515885 68516043 -84021216 - MLT1B LTR MaLR 0 390 215 2 1107 469 283 106 6 chr5 68516256 68516416 -84020843 + B4A SINE B4 117 292 0 2 1107 203 250 0 12 chr5 68516437 68516522 -84020737 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1107 242 248 200 44 chr5 68516565 68516700 -84020559 - MLT1A0 LTR MaLR -39 326 171 2 1107 406 331 19 31 chr5 68516922 68517084 -84020175 - RSINE1 SINE B4 -4 161 2 2 1107 968 139 165 0 chr5 68517147 68517341 -84019918 - URR1A DNA MER1_type 0 226 1 3 1107 598 256 27 35 chr5 68518089 68518248 -84019011 - ID_B1 SINE B4 -54 238 83 3 1107 1182 114 5 54 chr5 68518280 68518484 -84018775 - B2_Mm2 SINE B2 0 195 2 3 1107 701 265 41 0 chr5 68518947 68519094 -84018165 - B4 SINE B4 -2 290 138 3 1107 333 0 0 0 chr5 68519113 68519150 -84018109 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1107 306 0 0 0 chr5 68520915 68520949 -84016310 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1107 2863 141 31 19 chr5 68521652 68522130 -84015129 + RLTR25B LTR ERVK 1 484 -544 3 1107 214 236 73 0 chr5 68522094 68522149 -84015110 + B1_Mus2 SINE Alu 47 105 -42 3 1107 534 333 59 21 chr5 68522212 68522399 -84014860 - B4A SINE B4 -17 275 82 3 1107 387 0 0 0 chr5 68522713 68522756 -84014503 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1107 340 294 24 0 chr5 68522758 68522843 -84014416 - MTD LTR MaLR -239 180 94 4 1107 3045 119 53 38 chr5 68522843 68523349 -84013910 - MT2B2 LTR ERVL 0 584 71 4 1107 3412 149 67 26 chr5 68523349 68524318 -84012941 - RLTR13D1 LTR ERVK 0 1023 1 4 1107 566 92 0 0 chr5 68524318 68524394 -84012865 - MT2B LTR ERVL -525 76 1 4 1107 292 295 39 0 chr5 68524481 68524559 -84012700 - B4A SINE B4 -211 81 1 3 1107 268 241 0 0 chr5 68524903 68524961 -84012298 - Lx4B LINE L1 -107 6951 6894 4 1107 860 145 14 0 chr5 68525441 68525579 -84011680 - RMER19C LTR ERVK 0 611 472 4 1107 235 169 16 48 chr5 68525582 68525644 -84011615 + T-rich Low_complexity Low_complexity 1 60 0 4 1107 549 138 0 0 chr5 68525801 68525895 -84011364 + (GA)n Simple_repeat Simple_repeat 1 94 0 4 1107 516 211 140 0 chr5 68525900 68526014 -84011245 - ID_B1 SINE B4 -1 223 94 4 1107 252 220 19 149 chr5 68525924 68526031 -84011228 - B1_Mur4 SINE Alu -57 93 1 4 1107 238 244 63 137 chr5 68526153 68526195 -84011064 + B4 SINE B4 52 86 -206 5 1107 323 351 0 26 chr5 68526195 68526312 -84010947 + PB1D10 SINE Alu 3 116 -1 5 1107 584 147 211 0 chr5 68527723 68527832 -84009427 + URR1A DNA MER1_type 1 132 -94 5 1107 237 262 95 48 chr5 68527950 68527971 -84009288 - B4 SINE B4 -200 92 5 5 1107 245 242 48 16 chr5 68527971 68528034 -84009225 - ID4_ SINE ID -14 69 5 5 1107 23 33 0 0 chr5 68528048 68528078 -84009181 + AT_rich Low_complexity Low_complexity 1 30 0 5 1107 634 167 26 0 chr5 68528328 68528442 -84008817 + URR1A DNA MER1_type 102 218 -8 5 1107 36616 11 0 7 chr5 68528443 68534254 -84003005 + L1Md_A LINE L1 1 5586 -297 5 1107 8843 14 0 0 chr5 68534254 68535249 -84002010 + L1Md_A LINE L1 5587 6581 -1 5 1107 198 0 0 0 chr5 68535288 68535310 -84001949 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1107 802 315 21 76 chr5 68536484 68536865 -84000394 - MLT1A0 LTR MaLR -2 363 4 5 1107 906 161 75 0 chr5 68537011 68537172 -84000087 - MTC LTR MaLR -248 173 1 5 1107 2202 184 65 31 chr5 68537424 68537967 -83999292 + RLTR31_Mm LTR ERVK 1 561 0 6 1107 2717 133 16 2 chr5 68538666 68539095 -83998164 + Lx2B LINE L1 6563 6997 -3 6 1107 499 311 51 5 chr5 68539097 68539294 -83997965 - B3 SINE B2 -6 210 5 6 1107 3464 155 63 64 chr5 68539586 68539738 -83997521 + RLTR19B LTR ERVK 1 142 -573 6 1107 234 0 0 0 chr5 68539738 68539764 -83997495 + (TACTG)n Simple_repeat Simple_repeat 3 28 0 6 1107 3464 155 63 64 chr5 68539764 68540327 -83996932 + RLTR19B LTR ERVK 143 715 0 6 1107 210 67 0 62 chr5 68540742 68540790 -83996469 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 6 1107 412 357 195 34 chr5 68540864 68541310 -83995949 + L4 LINE RTE 651 1168 -861 6 1107 306 0 0 0 chr5 68542613 68542647 -83994612 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1107 494 202 12 12 chr5 68542924 68543089 -83994170 + CT-rich Low_complexity Low_complexity 2 166 0 6 1107 699 157 8 0 chr5 68545212 68545346 -83991913 + Lx LINE L1 6520 6654 0 6 1107 6896 68 0 18 chr5 68545378 68546290 -83990969 + L1Md_F2 LINE L1 5675 6570 -12 7 1107 237 280 40 0 chr5 68547633 68547708 -83989551 - MER94 DNA AcHobo 0 134 57 7 1107 210 380 30 0 chr5 68548472 68548572 -83988687 + MIR3 SINE MIR 81 183 -25 7 1107 26 0 0 0 chr5 68548693 68548719 -83988540 + AT_rich Low_complexity Low_complexity 1 26 0 7 1107 368 323 23 8 chr5 68548830 68548961 -83988298 + MER3 DNA MER1_type 1 133 -76 7 1107 318 250 97 11 chr5 68548956 68549049 -83988210 - ID_B1 SINE B4 -3 221 121 7 1107 2270 177 45 5 chr5 68549122 68549519 -83987740 + MTC LTR MaLR 1 413 -8 7 1107 971 204 57 77 chr5 68550010 68550366 -83986893 - RLTRETN_Mm LTR ERVK 0 403 6 7 138 11831 46 3 4 chr5 68550445 68552604 -83984655 - L1Md_F2 LINE L1 -1 6581 4429 7 1108 3309 53 7 5 chr5 68552604 68553025 -83984234 - L1Md_F3 LINE L1 -15 6569 6148 7 1108 11831 59 4 3 chr5 68553025 68553149 -83984110 - L1Md_F2 LINE L1 -1455 4428 4299 7 1108 352 366 72 0 chr5 68553250 68553403 -83983856 - MIR SINE MIR -96 166 3 8 1108 323 366 0 78 chr5 68554445 68554599 -83982660 + Tigger12c DNA MER2_type 2 143 -591 8 1108 272 207 47 35 chr5 68554978 68554994 -83982265 - MER53 DNA hAT -106 87 74 8 1108 414 0 0 0 chr5 68554994 68555040 -83982219 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1108 272 207 47 35 chr5 68555040 68555108 -83982151 - MER53 DNA hAT -120 73 2 8 1108 545 0 15 0 chr5 68555256 68555321 -83981938 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 8 1108 495 283 0 0 chr5 68555325 68555438 -83981821 - ID_B1 SINE B4 -31 193 81 8 1108 590 0 14 0 chr5 68555873 68555943 -83981316 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 8 1108 335 153 0 39 chr5 68555950 68556052 -83981207 + (TA)n Simple_repeat Simple_repeat 2 99 0 8 1108 286 314 102 42 chr5 68556352 68556568 -83980691 - LTR81B LTR ERV1? -1158 235 7 8 1108 200 59 0 29 chr5 68557282 68557317 -83979942 + (TTTTC)n Simple_repeat Simple_repeat 4 37 0 8 1108 1987 99 14 0 chr5 68557754 68558048 -83979211 + L1_Mus3 LINE L1 6341 6638 0 9 1108 3942 189 50 22 chr5 68558048 68558999 -83978260 + Lx2B LINE L1 5949 6994 -6 9 1108 7644 25 1 0 chr5 68559124 68560052 -83977207 - L1Md_A LINE L1 0 6582 5654 9 1108 422 346 68 65 chr5 68560457 68560735 -83976524 + B4A SINE B4 4 282 -10 9 1108 420 20 0 0 chr5 68560769 68560818 -83976441 + (CAGA)n Simple_repeat Simple_repeat 4 52 0 9 1108 1497 216 74 11 chr5 68561107 68561459 -83975800 - ORR1D1 LTR MaLR 0 374 1 9 1108 274 221 172 19 chr5 68562304 68562461 -83974798 + L1M5 LINE L1 5261 5441 -738 9 1108 773 237 0 57 chr5 68562664 68562874 -83974385 - B3A SINE B2 0 198 1 9 1108 200 163 23 0 chr5 68563356 68563399 -83973860 + CT-rich Low_complexity Low_complexity 3 46 0 9 1108 532 182 96 32 chr5 68563401 68563526 -83973733 + RLTR15 LTR ERVK 1 133 -226 9 1108 699 81 0 0 chr5 68563535 68563634 -83973625 + (TC)n Simple_repeat Simple_repeat 2 100 0 1 1108 1657 30 0 0 chr5 68563873 68564074 -83973185 - L1Md_F3 LINE L1 -3 6581 6381 1 1108 7690 48 2 4 chr5 68564077 68565188 -83972071 - L1Md_F2 LINE L1 -12 6570 5463 1 1108 1389 29 0 6 chr5 68565168 68565343 -83971916 - L1Md_F3 LINE L1 -196 6388 6215 1 1108 290 225 0 12 chr5 68565555 68565636 -83971623 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 1108 456 72 0 0 chr5 68565649 68565718 -83971541 + (TG)n Simple_repeat Simple_repeat 1 69 0 1 1108 380 283 92 84 chr5 68565731 68565862 -83971397 - B3A SINE B2 -39 159 28 1 1108 183 42 0 0 chr5 68566204 68566228 -83971031 + (CAAAT)n Simple_repeat Simple_repeat 1 24 0 1 1108 269 335 30 12 chr5 68566441 68566610 -83970649 - Tigger13a DNA MER2_type -309 462 291 1 1108 351 0 0 0 chr5 68566674 68566713 -83970546 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1108 32389 78 18 4 chr5 68566801 68572936 -83964323 - L1Md_F2 LINE L1 -11 6571 347 1 1108 750 282 27 110 chr5 68575246 68575439 -83961820 + B3A SINE B2 5 196 -2 1 1108 421 0 0 0 chr5 68575439 68575492 -83961767 + L1Md_F3 LINE L1 6518 6570 -14 1 1108 658 282 27 110 chr5 68575492 68575517 -83961742 + B3 SINE B2 179 205 -11 1 1108 270 289 55 36 chr5 68575682 68575847 -83961412 + ERVL-B4-int LTR ERVL 4870 5037 -677 1 1108 3495 174 27 9 chr5 68576633 68577289 -83959970 - Lx3C LINE L1 -5 6971 6304 1 1108 558 133 0 42 chr5 68577286 68577404 -83959855 + Lx4B LINE L1 6942 7054 -4 1 1108 242 292 9 0 chr5 68577748 68577854 -83959405 - Lx9 LINE L1 -6 7638 7532 1 1108 519 17 0 0 chr5 68577864 68577924 -83959335 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1108 939 230 66 7 chr5 68577933 68578205 -83959054 - Lx9 LINE L1 -207 7437 7150 1 1108 575 24 36 0 chr5 68578489 68578573 -83958686 + L1Md_F3 LINE L1 6480 6566 -18 1 1108 701 260 29 34 chr5 68578958 68579165 -83958094 - B3 SINE B2 -10 206 1 1 1108 359 311 38 0 chr5 68580640 68580746 -83956513 - PB1D10 SINE Alu -5 112 3 1 1108 983 140 64 0 chr5 68580993 68581150 -83956109 + B2_Mm1t SINE B2 1 167 -26 1 1108 372 100 316 9 chr5 68581186 68581292 -83955967 + B2_Mm2 SINE B2 47 188 -7 1 1108 1219 343 40 15 chr5 68581517 68582192 -83955067 + Lx8 LINE L1 6518 7209 -264 1 1108 2597 95 55 3 chr5 68582999 68583379 -83953880 - MTB LTR MaLR 0 400 1 1 1108 5169 151 95 110 chr5 68583379 68584283 -83952976 - MTB-int LTR MaLR 0 1258 390 1 1108 1108 74 6 0 chr5 68584283 68584445 -83952814 - L1_Mus2 LINE L1 -6 6560 6398 1 1108 5169 151 95 110 chr5 68584445 68584817 -83952442 - MTB-int LTR MaLR -869 389 2 1 1108 2670 83 39 3 chr5 68584818 68585202 -83952057 - MTB LTR MaLR -2 398 1 1 1108 1140 50 12 6 chr5 68586449 68586610 -83950649 + (TTC)n Simple_repeat Simple_repeat 2 163 0 1 1108 780 267 70 0 chr5 68586677 68586864 -83950395 - B3 SINE B2 -13 203 4 1 1108 21 57 0 0 chr5 68587014 68587049 -83950210 + AT_rich Low_complexity Low_complexity 1 35 0 1 1108 22 35 0 0 chr5 68587457 68587486 -83949773 + AT_rich Low_complexity Low_complexity 1 29 0 1 1108 295 330 5 21 chr5 68587720 68587906 -83949353 - L1ME2 LINE L1 -264 5900 5718 1 1108 262 279 76 0 chr5 68587992 68588071 -83949188 + PB1D9 SINE Alu 2 86 -34 1 1108 225 280 61 0 chr5 68588158 68588290 -83948969 - L1MC4 LINE L1 -197 7845 7706 1 1108 1512 91 9 5 chr5 68588468 68588690 -83948569 - L1_Mus2 LINE L1 0 6566 6344 1 1108 247 154 31 0 chr5 68588914 68588979 -83948280 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1108 277 323 62 84 chr5 68589125 68589578 -83947681 - L1MC4 LINE L1 -551 7491 7049 1 1108 306 184 0 0 chr5 68589861 68589910 -83947349 + RLTR21 LTR ERVK 5 53 -1519 1 1108 1414 130 34 8 chr5 68589910 68590173 -83947086 - Lx2B LINE L1 -1910 3976 3707 1 1108 11209 139 13 3 chr5 68590175 68592434 -83944825 + Lx2B LINE L1 3972 6257 -743 1 1108 3105 48 0 0 chr5 68592431 68592823 -83944436 - L1Md_F2 LINE L1 -242 6340 5949 1 1108 1921 49 4 12 chr5 68592824 68593072 -83944187 + L1Md_F2 LINE L1 6326 6571 -11 1 1108 642 212 20 7 chr5 68593073 68593220 -83944039 + Lx2B LINE L1 6250 6398 -602 1 1108 1968 195 37 111 chr5 68593246 68593490 -83943769 + RLTR21 LTR ERVK 1097 1336 -236 1 1108 996 58 0 0 chr5 68593490 68593627 -83943632 + L1Md_F2 LINE L1 6445 6581 -1 1 1108 1968 195 37 111 chr5 68593627 68593896 -83943363 + RLTR21 LTR ERVK 1337 1572 0 1 1108 386 330 18 0 chr5 68594495 68594604 -83942655 - PB1D10 SINE Alu -2 115 5 1 1108 234 0 0 0 chr5 68594748 68594774 -83942485 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1108 3255 121 46 4 chr5 68594774 68595273 -83941986 + Lx LINE L1 6130 6649 -5 1 1108 265 274 47 9 chr5 68595863 68595970 -83941289 + Charlie13b DNA Charlie 200 310 -202 1 1108 591 271 94 52 chr5 68596191 68596479 -83940780 - MER67C LTR ERV1 -407 304 5 1 1108 3727 53 2 29 chr5 68596493 68596979 -83940280 - L1Md_F2 LINE L1 -3 6579 6107 1 1108 8097 37 1 0 chr5 68597005 68598021 -83939238 - L1Md_T LINE L1 0 6582 5590 1 1108 289 242 56 112 chr5 68598066 68598173 -83939086 - PB1D10 SINE Alu -34 115 15 1 1108 2817 214 57 35 chr5 68598344 68598994 -83938265 + Lx6 LINE L1 6795 7458 -2 1 1108 305 286 101 0 chr5 68599022 68599221 -83938038 + L1M2 LINE L1 2961 3179 -2961 1 1108 369 0 0 0 chr5 68599244 68599285 -83937974 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1108 332 320 151 30 chr5 68599302 68599534 -83937725 + L1M2 LINE L1 3252 3511 -2632 1 1108 1567 115 10 80 chr5 68599808 68600110 -83937149 - Lx2 LINE L1 -331 6666 6386 1 1108 1834 129 9 18 chr5 68600111 68600442 -83936817 + Lx2 LINE L1 6669 6996 -1 1 1108 4361 24 0 0 chr5 68601626 68602119 -83935140 - MT2_Mm LTR ERVL 0 493 1 1 1108 484 246 209 16 chr5 68602231 68602413 -83934846 - MTD LTR MaLR 0 419 203 1 1108 238 269 0 0 chr5 68602582 68602634 -83934625 + CT-rich Low_complexity Low_complexity 3 54 0 1 1108 274 297 159 31 chr5 68602974 68603137 -83934122 + MIRc SINE MIR 72 255 -13 1 1108 381 291 0 23 chr5 68603597 68603685 -83933574 + B4A SINE B4 1 86 -206 1 1108 300 289 48 79 chr5 68604207 68604372 -83932887 - L1MD LINE L1 -1462 4684 4525 1 1108 39418 21 1 5 chr5 68604420 68613477 -83923782 - L1Md_A LINE L1 -3 6579 1 1 1108 27 0 0 0 chr5 68613498 68613525 -83923734 + AT_rich Low_complexity Low_complexity 1 27 0 1 1108 281 287 9 0 chr5 68613605 68613713 -83923546 + (TA)n Simple_repeat Simple_repeat 2 110 0 1 1108 6832 52 13 6 chr5 68613831 68614690 -83922569 + L1Md_F2 LINE L1 5706 6570 -12 1 1108 189 74 0 0 chr5 68614723 68614750 -83922509 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 1 1108 991 333 75 5 chr5 68614757 68615186 -83922073 + MER82 DNA MER2_type 4 462 -191 1 1108 9531 79 26 9 chr5 68615312 68616392 -83920867 - Lx3_Mus LINE L1 0 7009 5906 1 1108 288 0 0 0 chr5 68616392 68616424 -83920835 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1108 9531 69 1 6 chr5 68616424 68616945 -83920314 - Lx3_Mus LINE L1 -1104 5905 5391 1 1108 262 256 104 15 chr5 68617193 68617328 -83919931 - L1M5 LINE L1 -747 5432 5286 1 1108 532 216 22 0 chr5 68617335 68617474 -83919785 + Lx9 LINE L1 7490 7631 -13 1 1108 555 75 0 0 chr5 68617497 68617577 -83919682 + MTA_Mm-int LTR MaLR 1019 1098 0 1 1108 3054 76 0 2 chr5 68617577 68617972 -83919287 + MTA_Mm LTR MaLR 1 394 -2 1 1108 371 290 21 42 chr5 68618346 68618537 -83918722 + L1ME1 LINE L1 5733 5919 -260 1 1108 549 30 0 0 chr5 68618824 68618891 -83918368 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1108 507 220 15 0 chr5 68619920 68620052 -83917207 + L1MA5 LINE L1 6165 6298 -2 1 1108 633 314 117 37 chr5 68620219 68620629 -83916630 - Lx8 LINE L1 -8 7465 7023 1 1108 23 0 0 0 chr5 68620655 68620678 -83916581 + AT_rich Low_complexity Low_complexity 1 23 0 1 1108 4752 110 33 9 chr5 68621342 68622040 -83915219 + Lx2 LINE L1 6264 6978 -19 1 1108 423 0 0 0 chr5 68623024 68623071 -83914188 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1108 23 78 0 0 chr5 68623401 68623452 -83913807 + AT_rich Low_complexity Low_complexity 1 51 0 1 1108 1069 58 0 0 chr5 68623511 68623650 -83913609 - L1_Mus1 LINE L1 0 6567 6429 1 1108 272 355 87 17 chr5 68623695 68623867 -83913392 - LTR33A_ LTR ERVL -319 212 29 1 1108 548 159 18 0 chr5 68624051 68624164 -83913095 - Lx5 LINE L1 -515 5362 5248 1 1108 4277 184 34 11 chr5 68624165 68624815 -83912444 + Lx5 LINE L1 5366 6014 -1036 1 1108 6062 57 0 1 chr5 68624815 68625574 -83911685 + L1Md_F2 LINE L1 5824 6581 -1 1 1108 4277 202 48 42 chr5 68625574 68626161 -83911098 + Lx5 LINE L1 6015 6615 -435 1 1108 431 171 49 192 chr5 68626168 68626371 -83910888 + Lx4B LINE L1 6879 7052 -6 1 1108 249 300 21 53 chr5 68626834 68626929 -83910330 + MLT1G LTR MaLR 60 151 -440 1 1108 192 152 0 0 chr5 68627141 68627174 -83910085 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 1 1108 31 68 0 0 chr5 68627184 68627243 -83910016 + AT_rich Low_complexity Low_complexity 1 59 0 1 1108 1040 116 24 0 chr5 68627497 68627661 -83909598 - URR1B DNA MER1_type 0 225 58 1 1108 564 15 0 0 chr5 68628455 68628520 -83908739 + (TCCC)n Simple_repeat Simple_repeat 1 65 0 1 1108 777 11 0 0 chr5 68628520 68628610 -83908649 + (TTTC)n Simple_repeat Simple_repeat 1 90 0 1 1108 22 0 0 0 chr5 68628825 68628847 -83908412 + AT_rich Low_complexity Low_complexity 1 22 0 1 1108 396 224 0 0 chr5 68629054 68629152 -83908107 + (CA)n Simple_repeat Simple_repeat 2 99 0 1 1108 316 378 107 85 chr5 68629770 68630134 -83907125 - LTR16A1 LTR ERVL -9 447 76 1 1108 341 283 115 55 chr5 68630262 68630445 -83906814 + Lx8 LINE L1 6128 6321 -1152 1 1108 30 45 0 0 chr5 68630573 68630617 -83906642 + AT_rich Low_complexity Low_complexity 1 44 0 1 1108 1662 235 40 13 chr5 68631400 68631796 -83905463 + MTD LTR MaLR 1 407 -12 1 1108 1925 266 124 6 chr5 68631883 68632510 -83904749 - Lx9 LINE L1 -617 7027 6327 1 1108 1198 62 0 0 chr5 68632721 68632867 -83904392 - B1_Mm SINE Alu 0 147 2 1 1108 361 321 66 0 chr5 68633635 68633772 -83903487 + MIR SINE MIR 85 230 -32 1 1108 1895 276 112 24 chr5 68633822 68634542 -83902717 + Lx6 LINE L1 6309 7434 -26 1 1108 301 325 119 37 chr5 68634605 68634848 -83902411 + MLT1B LTR MaLR 40 302 -88 1 1108 1207 252 113 6 chr5 68634982 68635434 -83901825 - Lx2B LINE L1 -3 7005 6465 1 1108 344 322 129 49 chr5 68635629 68635685 -83901574 - Charlie2b DNA MER1_type -2159 623 569 1 1108 2304 152 137 122 chr5 68635685 68636365 -83900894 - RMER6C LTR ERVK 0 690 1 2 1108 344 322 129 49 chr5 68636365 68636533 -83900726 - Charlie2b DNA MER1_type -2214 568 381 1 1108 446 281 205 10 chr5 68639067 68639533 -83897726 - L1MB1 LINE L1 -95 6239 5671 2 1108 654 265 50 45 chr5 68639566 68639787 -83897472 - MER2 DNA MER2_type 0 345 124 2 1108 293 262 38 87 chr5 68639896 68640080 -83897179 + L1M2 LINE L1 5391 5565 -747 2 1108 627 288 113 20 chr5 68640297 68640623 -83896636 - Lx8 LINE L1 -30 7443 7076 2 1108 4762 106 0 23 chr5 68641675 68642498 -83894761 - Lx3B LINE L1 -661 6312 5508 2 1108 4294 122 20 3 chr5 68642498 68643145 -83894114 + Lx3B LINE L1 6304 6961 -12 2 1108 195 204 0 0 chr5 68643216 68643260 -83893999 + CT-rich Low_complexity Low_complexity 3 46 0 2 1108 549 0 0 0 chr5 68644249 68644310 -83892949 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1108 270 326 78 0 chr5 68644500 68644629 -83892630 - MER5A1 DNA MER1_type -22 144 6 2 1108 22 35 0 0 chr5 68644804 68644833 -83892426 + AT_rich Low_complexity Low_complexity 1 29 0 2 1108 385 329 105 0 chr5 68644833 68644985 -83892274 + B3A SINE B2 2 169 -29 2 1108 423 292 17 17 chr5 68647210 68647325 -83889934 - ID_B1 SINE B4 -39 185 71 2 1108 3578 241 101 8 chr5 68647511 68648453 -83888806 + Lx6 LINE L1 6148 7176 -284 2 1108 1886 257 28 22 chr5 68648743 68649353 -83887906 + Lx5 LINE L1 6457 7033 -17 2 1108 369 75 0 0 chr5 68651551 68651604 -83885655 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1108 217 299 43 54 chr5 68651638 68651730 -83885529 - L2c LINE L2 -30 3357 3267 2 1108 2627 83 37 5 chr5 68651919 68652293 -83884966 - L1Md_F2 LINE L1 0 6582 6197 2 1108 5521 210 46 6 chr5 68652653 68653920 -83883339 + Lx9 LINE L1 6326 7643 -1 2 1108 422 347 86 20 chr5 68653926 68654058 -83883201 + B4 SINE B4 81 211 -81 2 1108 414 88 0 0 chr5 68654058 68654126 -83883133 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1108 422 347 86 20 chr5 68654126 68654190 -83883069 + B4 SINE B4 212 289 -3 2 1108 339 25 0 0 chr5 68654215 68654255 -83883004 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1108 722 188 14 27 chr5 68654942 68655090 -83882169 + B1_Mur1 SINE Alu 3 148 -1 2 1108 23 0 0 0 chr5 68655186 68655209 -83882050 + AT_rich Low_complexity Low_complexity 1 23 0 2 1108 816 134 0 0 chr5 68655899 68656033 -83881226 + (TTCC)n Simple_repeat Simple_repeat 3 136 0 2 1108 3922 73 58 2 chr5 68656041 68656572 -83880687 - L1_Mus3 LINE L1 -8 6630 6070 2 1108 324 360 96 78 chr5 68658901 68659223 -83878036 + LTR33 LTR ERVL 118 445 -70 2 1108 181 267 142 58 chr5 68659374 68659529 -83877730 - L2c LINE L2 0 3387 3220 2 1108 241 296 83 60 chr5 68660697 68660999 -83876260 + L1M5 LINE L1 5325 5633 -491 2 1108 443 378 65 72 chr5 68661545 68661836 -83875423 + B4A SINE B4 2 290 -2 2 1108 422 253 159 5 chr5 68661951 68662146 -83875113 - MER34A1 LTR ERV1 -76 511 287 2 1108 1338 206 76 68 chr5 68662412 68662781 -83874478 + ORR1C2 LTR MaLR 1 372 -12 2 1108 352 219 12 24 chr5 68663123 68663207 -83874052 - PB1D10 SINE Alu -1 116 34 2 1108 1679 279 21 6 chr5 68663928 68664429 -83872830 - Lx6 LINE L1 -56 7404 6513 2 1108 361 95 0 31 chr5 68664747 68664812 -83872447 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 2 1108 506 304 116 34 chr5 68667683 68668150 -83869109 - L1MA6 LINE L1 0 6300 5796 2 1108 288 137 0 0 chr5 68668174 68668225 -83869034 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 2 1108 297 51 0 0 chr5 68668268 68668307 -83868952 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1108 589 276 107 37 chr5 68668318 68668748 -83868511 - L1MA6 LINE L1 -529 5762 5303 2 1108 643 228 63 23 chr5 68669119 68669294 -83867965 + RMER12 LTR ERVK 1141 1322 0 2 1108 1103 155 188 56 chr5 68669294 68669559 -83867700 - RMER6A LTR ERVK -448 308 9 2 1108 235 242 146 36 chr5 68669668 68669805 -83867454 + Lx7 LINE L1 7217 7368 -328 2 1108 696 235 65 25 chr5 68669817 68670096 -83867163 - L1MA6 LINE L1 -842 5301 5012 2 1108 282 324 64 7 chr5 68670255 68670395 -83866864 - MLT1A LTR MaLR -205 185 38 2 1108 459 35 0 0 chr5 68670927 68670984 -83866275 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1108 191 234 0 13 chr5 68671369 68671447 -83865812 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 1108 255 255 131 10 chr5 68671465 68671564 -83865695 - RSINE1 SINE B4 -7 158 48 2 1108 2175 38 11 0 chr5 68671635 68671902 -83865357 + L1Md_F3 LINE L1 6313 6582 -2 2 1108 2814 125 52 5 chr5 68671942 68672383 -83864876 - Lx3A LINE L1 -78 6903 6442 2 1108 477 134 24 0 chr5 68672379 68672461 -83864798 + Lx3_Mus LINE L1 5837 5920 -1089 2 1108 614 146 9 0 chr5 68672461 68672571 -83864688 + GA-rich Low_complexity Low_complexity 1 111 0 2 1108 2931 139 11 30 chr5 68672582 68673124 -83864135 + Lx3_Mus LINE L1 5908 6439 -570 2 1108 3087 67 35 2 chr5 68673472 68673894 -83863365 - L1_Mus3 LINE L1 -6 6632 6197 2 1108 536 40 13 0 chr5 68673917 68673992 -83863267 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1108 219 308 19 0 chr5 68674035 68674087 -83863172 - ID4 SINE ID -3 80 28 2 1108 436 307 127 47 chr5 68674246 68674506 -83862753 - L1MC4a LINE L1 -248 7634 7337 2 1108 894 131 0 0 chr5 68674506 68674651 -83862608 + (TTCC)n Simple_repeat Simple_repeat 4 148 0 2 1108 436 307 127 47 chr5 68674651 68675156 -83862103 - L1MC4a LINE L1 -546 7336 6809 2 1108 230 175 140 0 chr5 68675840 68675897 -83861362 + RLTR15 LTR ERVK 1 65 -294 2 1108 2858 99 29 13 chr5 68675897 68676348 -83860911 + Lx3_Mus LINE L1 6551 7008 -1 2 1108 1119 219 35 21 chr5 68676361 68676650 -83860609 + RLTR15 LTR ERVK 49 341 -18 2 1108 459 0 0 0 chr5 68676708 68676759 -83860500 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1108 3455 78 0 0 chr5 68677427 68677873 -83859386 + L1_Mus1 LINE L1 6122 6567 0 2 1108 1557 17 0 0 chr5 68680243 68680423 -83856836 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1108 1256 84 0 6 chr5 68680426 68680606 -83856653 + (TTCTCC)n Simple_repeat Simple_repeat 2 180 0 2 1108 484 149 9 18 chr5 68680606 68680715 -83856544 + CT-rich Low_complexity Low_complexity 1 108 0 2 1108 484 292 66 30 chr5 68680942 68681108 -83856151 - B3A SINE B2 -22 176 5 2 1108 23 33 0 0 chr5 68681435 68681465 -83855794 + AT_rich Low_complexity Low_complexity 1 30 0 2 1109 4640 159 40 6 chr5 68682876 68683685 -83853574 + Lx4A LINE L1 6223 7058 0 2 1109 303 88 0 34 chr5 68684424 68684483 -83852776 - L1Md_F2 LINE L1 -5 6577 6521 2 1109 374 275 197 0 chr5 68684780 68684922 -83852337 - RMER15 LTR ERVL -68 507 338 2 1109 450 0 0 0 chr5 68685175 68685225 -83852034 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1109 304 231 48 0 chr5 68685251 68685355 -83851904 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 2 1109 288 175 109 16 chr5 68685395 68685459 -83851800 + Lx9 LINE L1 7356 7425 -219 2 1109 2272 147 21 10 chr5 68686897 68687282 -83849977 - RLTR9D LTR ERVK -14 389 1 2 1109 351 141 0 0 chr5 68687632 68687696 -83849563 + (TCTCCC)n Simple_repeat Simple_repeat 3 66 0 2 1109 226 361 20 49 chr5 68687989 68688091 -83849168 - MER103 DNA DNA -67 99 1 2 1109 1665 132 19 4 chr5 68688659 68688925 -83848334 + Lx3A LINE L1 6704 6973 -8 2 1109 21 36 0 0 chr5 68688926 68688954 -83848305 + AT_rich Low_complexity Low_complexity 1 28 0 2 1109 349 213 116 11 chr5 68689136 68689231 -83848028 + MLT1A0 LTR MaLR 23 127 -238 2 1109 673 334 116 19 chr5 68689839 68690159 -83847100 + LTR53 LTR ERVL 148 498 -21 2 1109 187 303 40 0 chr5 68690490 68690566 -83846693 + MIRc SINE MIR 190 268 0 2 1109 33712 87 13 2 chr5 68691546 68697734 -83839525 - L1Md_F2 LINE L1 0 6582 366 2 1109 2187 283 55 59 chr5 68697886 68698633 -83838626 - RMER1C Other Other -1 1341 598 2 1109 573 15 0 0 chr5 68698639 68698705 -83838554 + (GGA)n Simple_repeat Simple_repeat 2 67 0 2 1109 474 340 132 18 chr5 68698786 68699113 -83838146 + Lx8 LINE L1 7105 7468 -5 2 1109 612 258 8 0 chr5 68699204 68699328 -83837931 + RSINE1 SINE B4 3 127 -38 2 1109 978 339 43 21 chr5 68700548 68700990 -83836269 - MLT2B3 LTR ERVL -73 442 3 2 1109 198 0 0 0 chr5 68701491 68701513 -83835746 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2 1109 1802 164 15 6 chr5 68701646 68701971 -83835288 + ORR1A4 LTR MaLR 1 328 -1 2 1109 748 125 0 9 chr5 68702847 68702960 -83834299 - L1_Mus1 LINE L1 -381 6186 6075 2 1109 751 71 124 0 chr5 68702942 68703055 -83834204 + L1Md_F2 LINE L1 6169 6295 -287 2 1109 3882 106 10 25 chr5 68703055 68703663 -83833596 + RLTR5_Mm LTR ERV1 1 599 -29 2 1109 2179 81 0 0 chr5 68703671 68703954 -83833305 + L1_Mus1 LINE L1 6284 6566 -1 2 1109 45 0 0 0 chr5 68704316 68704361 -83832898 + AT_rich Low_complexity Low_complexity 1 45 0 2 1109 766 224 32 0 chr5 68704978 68705134 -83832125 - Lx9 LINE L1 -344 7300 7140 2 1109 372 22 0 0 chr5 68705172 68705217 -83832042 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1109 23 0 0 0 chr5 68705325 68705348 -83831911 + AT_rich Low_complexity Low_complexity 1 23 0 2 1109 180 0 0 0 chr5 68705852 68705872 -83831387 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1109 234 349 35 24 chr5 68705906 68705991 -83831268 - RSINE1 SINE B4 -2 163 78 2 1109 229 378 97 41 chr5 68706258 68706597 -83830662 - L1MEd LINE L1 -5749 370 13 2 1109 21 71 0 0 chr5 68706671 68706713 -83830546 + AT_rich Low_complexity Low_complexity 1 42 0 2 1109 190 298 39 155 chr5 68707292 68707447 -83829812 - MER5A DNA MER1_type -27 162 26 2 1109 3436 18 5 0 chr5 68707463 68707857 -83829402 - MTA_Mm LTR MaLR 0 396 1 2 1109 1579 243 79 53 chr5 68707981 68708249 -83829010 - RLTR31_Mm LTR ERVK 0 561 312 2 1109 2230 65 7 10 chr5 68708249 68708557 -83828702 + Lx3_Mus LINE L1 6703 7009 0 2 1109 1579 243 79 53 chr5 68708557 68708835 -83828424 - RLTR31_Mm LTR ERVK -250 311 2 2 1109 509 289 63 13 chr5 68709283 68709441 -83827818 + ID_B1 SINE B4 1 166 -58 3 1109 641 282 170 14 chr5 68709530 68709742 -83827517 - MTD LTR MaLR -14 405 161 3 1109 249 250 0 0 chr5 68709742 68709818 -83827441 - Lx9 LINE L1 -133 7511 7436 3 1109 1038 188 10 0 chr5 68709818 68710010 -83827249 + Lx9 LINE L1 7223 7416 -228 3 1109 356 103 0 17 chr5 68710902 68710961 -83826298 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1109 423 0 0 0 chr5 68710961 68711007 -83826252 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1109 3254 51 2 0 chr5 68712017 68712412 -83824847 - MTA_Mm LTR MaLR 0 396 1 3 1109 8275 71 25 3 chr5 68712523 68714268 -83822991 - L1Md_F2 LINE L1 -14 6568 4786 3 1109 364 147 43 14 chr5 68715135 68715273 -83821986 + (TA)n Simple_repeat Simple_repeat 1 142 0 3 1109 32 0 0 0 chr5 68716603 68716635 -83820624 + AT_rich Low_complexity Low_complexity 1 32 0 3 1109 198 0 0 0 chr5 68716716 68716738 -83820521 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 3 1109 517 72 24 0 chr5 68716778 68716861 -83820398 + (TG)n Simple_repeat Simple_repeat 1 85 0 3 1109 320 278 0 0 chr5 68716861 68716933 -83820326 - RSINE1 SINE B4 -18 147 76 3 1109 1207 121 11 0 chr5 68717024 68717206 -83820053 + B2_Mm1t SINE B2 2 185 -8 3 1109 27 29 0 0 chr5 68717652 68717686 -83819573 + AT_rich Low_complexity Low_complexity 1 34 0 3 1109 207 108 0 26 chr5 68717711 68717749 -83819510 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 3 1109 315 0 0 0 chr5 68717924 68717959 -83819300 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1109 618 14 0 0 chr5 68717959 68718029 -83819230 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 1109 1186 118 78 5 chr5 68718256 68718461 -83818798 - L1_Mus3 LINE L1 -7 6631 6412 3 1109 387 0 0 0 chr5 68718826 68718869 -83818390 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 3 1109 306 325 81 28 chr5 68719755 68720078 -83817181 + L1MC4 LINE L1 7523 7862 -180 3 1109 622 298 31 19 chr5 68720178 68720438 -83816821 + BLACKJACK DNA AcHobo 1398 1660 -1284 3 1109 3902 44 2 0 chr5 68721374 68721848 -83815411 - L1Md_F2 LINE L1 -5 6577 6103 3 1109 321 82 0 0 chr5 68721939 68721988 -83815271 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1109 207 0 0 0 chr5 68724463 68724486 -83812773 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1109 4116 135 42 20 chr5 68725313 68726166 -83811093 + L1_Mus3 LINE L1 5699 6634 -4 3 1109 209 83 28 0 chr5 68726187 68726223 -83811036 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 3 1109 709 256 160 93 chr5 68726252 68726448 -83810811 - RLTR22_Mur LTR ERVK -674 1174 905 3 1109 967 71 0 0 chr5 68726448 68726575 -83810684 + B1_Mus1 SINE Alu 1 127 -21 3 1109 709 256 160 93 chr5 68726575 68726803 -83810456 - RLTR22_Mur LTR ERVK -674 904 587 3 1109 14812 48 1 43 chr5 68726806 68729704 -83807555 - L1Md_F3 LINE L1 -14 6570 3815 3 1109 1167 283 99 48 chr5 68729780 68730325 -83806934 - RLTR22_Mur LTR ERVK -1272 576 4 3 1109 986 159 85 4 chr5 68731112 68731353 -83805906 - RLTR45 LTR ERVK 0 482 175 3 1109 2388 116 24 5 chr5 68731368 68731740 -83805519 + Lx3_Mus LINE L1 6631 7009 0 3 1109 200 86 29 0 chr5 68731750 68731785 -83805474 + (CAA)n Simple_repeat Simple_repeat 1 36 0 3 1109 1436 83 0 0 chr5 68731810 68732014 -83805245 - Lx3_Mus LINE L1 -213 6796 6593 3 1109 319 246 11 39 chr5 68732490 68732592 -83804667 - BC1_Mm scRNA scRNA -49 103 5 3 1109 679 194 7 15 chr5 68733204 68733340 -83803919 + B1_Mus2 SINE Alu 5 139 -8 3 1109 378 309 83 2 chr5 68734156 68734281 -83802978 + PB1D10 SINE Alu 10 149 0 3 1109 465 252 47 0 chr5 68734788 68734895 -83802364 + PB1D10 SINE Alu 4 115 -2 3 1109 618 204 74 0 chr5 68734900 68735008 -83802251 + B3 SINE B2 1 116 -100 3 1109 30 45 0 0 chr5 68735040 68735084 -83802175 + AT_rich Low_complexity Low_complexity 1 44 0 3 1109 522 0 0 0 chr5 68738507 68738565 -83798694 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1109 410 214 0 7 chr5 68738565 68738711 -83798548 + (CA)n Simple_repeat Simple_repeat 2 146 0 3 1109 258 217 26 0 chr5 68738716 68738831 -83798428 + GA-rich Low_complexity Low_complexity 1 118 0 3 1109 614 65 11 0 chr5 68738840 68738932 -83798327 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 1109 423 0 0 0 chr5 68738932 68738978 -83798281 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1109 236 206 0 73 chr5 68739381 68739449 -83797810 + Tigger5 DNA MER2_type 2281 2343 -63 3 1109 24 0 0 0 chr5 68740048 68740072 -83797187 + AT_rich Low_complexity Low_complexity 1 24 0 3 1109 254 329 0 0 chr5 68742049 68742119 -83795140 + GA-rich Low_complexity Low_complexity 6 75 0 3 1109 522 0 0 0 chr5 68743620 68743678 -83793581 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1109 516 16 0 0 chr5 68743678 68743738 -83793521 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1109 297 0 0 0 chr5 68744403 68744436 -83792823 + (TAA)n Simple_repeat Simple_repeat 3 35 0 3 1109 672 298 5 0 chr5 68744947 68745152 -83792107 - Lx9 LINE L1 -696 6948 6743 3 1109 2138 233 48 61 chr5 68745150 68745224 -83792035 + Lx9 LINE L1 6949 7022 -622 3 1109 4032 87 125 46 chr5 68745224 68745550 -83791709 + RMER17A LTR ERVK 1 366 -385 3 1109 486 49 0 0 chr5 68745550 68745611 -83791648 + (TCCC)n Simple_repeat Simple_repeat 2 62 0 3 1109 4032 87 125 46 chr5 68745611 68745980 -83791279 + RMER17A LTR ERVK 367 750 -1 3 1109 2138 233 48 61 chr5 68745980 68746444 -83790815 + Lx9 LINE L1 7023 7499 -145 3 1109 234 0 0 0 chr5 68746444 68746470 -83790789 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1109 2138 233 48 61 chr5 68746470 68746635 -83790624 + Lx9 LINE L1 7500 7643 -1 3 1109 511 207 6 211 chr5 68746649 68746820 -83790439 + B1_Mur2 SINE Alu 7 142 -7 3 1109 406 273 19 39 chr5 68747232 68747388 -83789871 - RLTR26 LTR ERVK 0 642 490 3 1109 1771 196 91 69 chr5 68747404 68747892 -83789367 - RLTR26 LTR ERVK -97 545 2 3 1109 421 176 0 0 chr5 68747899 68747973 -83789286 - Lx9 LINE L1 -614 7030 6957 3 1109 290 243 13 26 chr5 68747976 68748052 -83789207 + Lx9 LINE L1 6740 6814 -830 3 1109 588 125 0 0 chr5 68748885 68748981 -83788278 + (GGAA)n Simple_repeat Simple_repeat 2 97 0 3 1109 1247 311 54 18 chr5 68749033 68749624 -83787635 + Lx7 LINE L1 5985 6583 -877 3 1109 2662 69 0 0 chr5 68749620 68749983 -83787276 - L1_Mus1 LINE L1 -413 6153 5791 3 1109 2927 55 15 15 chr5 68749983 68750373 -83786886 + L1_Mus1 LINE L1 6178 6567 0 3 1109 1572 297 78 27 chr5 68750392 68751060 -83786199 + Lx7 LINE L1 6598 7299 -397 3 1109 204 40 0 0 chr5 68751126 68751151 -83786108 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 3 1109 45 45 0 0 chr5 68751246 68751312 -83785947 + AT_rich Low_complexity Low_complexity 1 66 0 3 1109 3591 188 52 8 chr5 68752131 68752280 -83784979 - RMER1A Other Other -11 1019 862 3 1109 450 36 0 0 chr5 68752280 68752336 -83784923 + (CAA)n Simple_repeat Simple_repeat 2 57 0 3 1109 3591 209 48 18 chr5 68752336 68753066 -83784193 - RMER1A Other Other -169 861 1 3 1109 1201 287 49 75 chr5 68753080 68753719 -83783540 - RMER1B Other Other -556 510 8 3 1109 186 43 0 0 chr5 68754004 68754027 -83783232 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1109 279 71 0 0 chr5 68755315 68755357 -83781902 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1109 3093 19 87 0 chr5 68755738 68756116 -83781143 + IAPLTR2a LTR ERVK 1 411 0 3 1109 638 229 97 11 chr5 68756374 68756559 -83780700 - B3 SINE B2 -15 201 1 3 1109 393 246 134 45 chr5 68756666 68756845 -83780414 - MLT1B LTR MaLR -164 226 32 3 1109 484 350 75 52 chr5 68757379 68757528 -83779731 - ORR1E LTR MaLR -1 358 201 3 1109 414 0 0 0 chr5 68757528 68757574 -83779685 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1109 484 350 75 52 chr5 68757574 68757773 -83779486 - ORR1E LTR MaLR -159 200 2 3 1109 241 327 68 80 chr5 68758257 68758433 -83778826 - MIR SINE MIR -70 192 19 3 1109 180 0 0 0 chr5 68759231 68759251 -83778008 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1109 1212 48 7 0 chr5 68759251 68759398 -83777861 - B1_Mus1 SINE Alu 0 148 1 3 1109 2762 135 4 26 chr5 68759417 68759880 -83777379 + RLTR11B LTR ERVK 1 453 0 3 1109 296 250 0 0 chr5 68761690 68761746 -83775513 + ORR1C1 LTR MaLR 1 56 -322 3 1109 3390 196 30 4 chr5 68761747 68762449 -83774810 - Lx9 LINE L1 -379 7265 6546 3 1109 311 169 14 0 chr5 68762782 68762853 -83774406 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 1109 348 279 22 122 chr5 68763817 68763956 -83773303 + MER2B DNA MER2_type 211 335 -1 3 1109 227 361 81 8 chr5 68764188 68764311 -83772948 - MLT1E1 LTR MaLR -14 640 509 3 1109 21 0 0 0 chr5 68764960 68764981 -83772278 + AT_rich Low_complexity Low_complexity 1 21 0 3 1109 5428 161 60 1 chr5 68764981 68765948 -83771311 - Lx2 LINE L1 0 6997 5974 3 1109 222 118 0 0 chr5 68766260 68766294 -83770965 + (TTG)n Simple_repeat Simple_repeat 2 35 0 3 1109 6838 62 1 1 chr5 68766917 68767831 -83769428 + L1Md_F2 LINE L1 4673 5586 -297 3 1109 7126 84 27 6 chr5 68767831 68768807 -83768452 + L1Md_F2 LINE L1 5587 6582 0 3 1109 1912 262 97 17 chr5 68768865 68769624 -83767635 + Lx5 LINE L1 6207 7053 -5 3 1109 28 0 0 0 chr5 68770816 68770844 -83766415 + AT_rich Low_complexity Low_complexity 1 28 0 3 1109 23 0 0 0 chr5 68771307 68771330 -83765929 + AT_rich Low_complexity Low_complexity 1 23 0 3 1109 261 0 0 0 chr5 68773201 68773230 -83764029 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1109 11006 154 22 13 chr5 68773239 68776496 -83760763 + Lx4A LINE L1 3765 7054 -4 3 1109 326 384 109 0 chr5 68776775 68776913 -83760346 - LTR16A LTR ERVL -232 219 67 3 1109 220 300 50 0 chr5 68778670 68778750 -83758509 - L2b LINE L2 -50 3325 3242 3 1109 1600 154 0 4 chr5 68779352 68779619 -83757640 + L1VL1 LINE L1 1 266 -6156 3 1109 29252 92 19 1 chr5 68779619 68784833 -83752426 + L1Md_F LINE L1 277 5586 -297 3 1109 7136 85 7 13 chr5 68784833 68785832 -83751427 + L1Md_F2 LINE L1 5587 6579 -3 3 1109 188 35 35 0 chr5 68786637 68786666 -83750593 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1109 562 60 24 0 chr5 68787552 68787635 -83749624 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 1109 192 77 0 0 chr5 68789220 68789246 -83748013 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1109 311 100 14 41 chr5 68789295 68789368 -83747891 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1109 953 61 11 0 chr5 68789421 68789557 -83747702 - B1_Mus1 SINE Alu 0 148 10 4 1109 1059 38 12 43 chr5 68789604 68789768 -83747491 - L1_Mus3 LINE L1 -18 6620 6462 4 1109 414 301 7 36 chr5 68789830 68789968 -83747291 - Lx9 LINE L1 -1006 6638 6505 4 1109 282 262 19 0 chr5 68789975 68790078 -83747181 + Lx9 LINE L1 6947 7034 -610 4 1109 214 186 23 0 chr5 68790760 68790803 -83746456 + (CTAA)n Simple_repeat Simple_repeat 4 47 0 4 1109 22 35 0 0 chr5 68791020 68791049 -83746210 + AT_rich Low_complexity Low_complexity 1 29 0 4 1109 216 0 0 0 chr5 68791152 68791176 -83746083 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 4 1109 228 430 14 7 chr5 68793004 68793147 -83744112 - MER5A DNA MER1_type -45 144 1 4 1109 292 374 137 10 chr5 68793871 68794076 -83743183 + MIRb SINE MIR 24 254 -14 4 1109 747 167 19 0 chr5 68794765 68794927 -83742332 + (TA)n Simple_repeat Simple_repeat 1 165 0 4 1109 252 338 49 49 chr5 68795156 68795299 -83741960 + Tigger5 DNA MER2_type 1 143 -2263 4 1109 450 0 0 0 chr5 68795530 68795580 -83741679 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 4 1109 23 33 0 0 chr5 68795658 68795688 -83741571 + AT_rich Low_complexity Low_complexity 1 30 0 4 1109 207 69 0 0 chr5 68795800 68795829 -83741430 + (TATTG)n Simple_repeat Simple_repeat 2 30 0 4 1109 289 328 38 15 chr5 68796125 68796258 -83741001 - Lx8 LINE L1 -785 6688 6553 4 1109 740 313 72 51 chr5 68796273 68796761 -83740498 + Lx8 LINE L1 6971 7468 -5 4 1109 357 332 135 86 chr5 68796825 68797254 -83740005 + MLT1C LTR MaLR 16 465 -2 4 1109 771 113 0 60 chr5 68797270 68797421 -83739838 + Lx LINE L1 6511 6652 -2 4 1109 35 88 0 0 chr5 68797548 68797639 -83739620 + AT_rich Low_complexity Low_complexity 1 91 0 4 1109 23 0 0 0 chr5 68798838 68798861 -83738398 + AT_rich Low_complexity Low_complexity 1 23 0 4 1109 821 80 22 2 chr5 68799156 68799282 -83737977 + B1_Mm SINE Alu 14 147 0 4 1109 456 91 60 8 chr5 68799282 68799415 -83737844 + A-rich Low_complexity Low_complexity 2 141 0 4 1109 393 86 0 0 chr5 68799588 68799646 -83737613 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1109 992 216 140 0 chr5 68800346 68800661 -83736598 + Lx9 LINE L1 7284 7642 -2 4 1109 2121 88 17 3 chr5 68800728 68801025 -83736234 + Lx3_Mus LINE L1 6709 7009 0 4 1109 1132 258 135 52 chr5 68801030 68801533 -83735726 + RMER4B LTR ERVK 30 574 -11 4 1109 2777 157 20 32 chr5 68801773 68802063 -83735196 - RLTR12B LTR ERVK -35 493 215 4 1109 2411 67 0 0 chr5 68802063 68802378 -83734881 - L1Md_A LINE L1 0 6582 6268 4 1109 2777 157 20 32 chr5 68802378 68802586 -83734673 - RLTR12B LTR ERVK -314 214 1 4 1109 364 326 53 42 chr5 68802586 68802775 -83734484 + L1M2 LINE L1 4849 5039 -1104 4 1109 253 279 92 62 chr5 68803787 68803917 -83733342 + LTR86B1 LTR ERVL 1 134 -359 4 1109 748 214 187 31 chr5 68803939 68804233 -83733026 + RLTR9A LTR ERVK 1 340 -28 4 1109 2811 39 0 3 chr5 68804233 68804571 -83732688 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1109 24238 31 35 12 chr5 68804571 68807658 -83729601 + IAPEz-int LTR ERVK 8 3165 -3316 4 1109 9356 25 2 8 chr5 68807647 68808791 -83728468 + IAPEz-int LTR ERVK 5345 6481 0 4 1109 2811 39 0 3 chr5 68808791 68809129 -83728130 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1109 288 0 0 0 chr5 68809172 68809204 -83728055 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1109 837 30 0 0 chr5 68809213 68809313 -83727946 + (GA)n Simple_repeat Simple_repeat 1 100 0 4 1109 432 0 0 0 chr5 68811035 68811083 -83726176 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1109 668 237 0 22 chr5 68811579 68811717 -83725542 - B1_Mur1 SINE Alu -1 148 14 4 1109 440 324 0 46 chr5 68811583 68811735 -83725524 - ID_B1 SINE B4 -2 222 78 4 1109 251 333 141 0 chr5 68812054 68812153 -83725106 + MLT1A0 LTR MaLR 163 275 -90 4 1109 836 295 66 52 chr5 68812433 68812798 -83724461 + ORR1D2 LTR MaLR 1 370 0 4 1110 833 259 29 0 chr5 68814624 68814798 -83722461 - B3 SINE B2 -6 210 32 4 1110 415 87 29 0 chr5 68815603 68815672 -83721587 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 1110 22 56 0 0 chr5 68815703 68815739 -83721520 + AT_rich Low_complexity Low_complexity 1 36 0 4 1110 846 30 0 0 chr5 68815931 68816032 -83721227 + (GAA)n Simple_repeat Simple_repeat 3 103 0 4 1110 2613 147 32 206 chr5 68816372 68817100 -83720159 + MT2B LTR ERVL 1 601 0 4 1110 1504 202 17 78 chr5 68817145 68817554 -83719705 + ORR1C2 LTR MaLR 1 384 0 4 1110 283 224 39 13 chr5 68817765 68817842 -83719417 - MLT1A0 LTR MaLR -273 92 14 4 1110 248 319 42 0 chr5 68817842 68818005 -83719254 - MER47B DNA MER2_type -1 417 184 4 1110 1326 69 34 11 chr5 68818532 68818708 -83718551 + B2_Mm2 SINE B2 2 181 -14 4 1110 343 148 164 32 chr5 68818738 68818845 -83718414 + B2_Mm2 SINE B2 47 183 -10 4 1110 1902 224 62 29 chr5 68819698 68820149 -83717110 - RMER19C LTR ERVK 0 611 146 4 1110 4053 42 2 0 chr5 68820335 68820836 -83716423 + RLTR13A LTR ERVK 1 502 -353 4 1110 8007 32 3 5 chr5 68820848 68822191 -83715068 - L1Md_F2 LINE L1 0 6582 5243 4 1110 37158 64 2 23 chr5 68822197 68829280 -83707979 - L1Md_T LINE L1 0 6582 99 4 1110 2240 61 98 0 chr5 68829286 68829624 -83707635 + RLTR13A LTR ERVK 485 855 0 4 1110 3720 179 21 52 chr5 68829681 68830584 -83706675 + Lx7 LINE L1 4519 5393 -487 4 1110 225 88 0 0 chr5 68830609 68830616 -83706643 + (TA)n Simple_repeat Simple_repeat 2 8 0 4 1110 261 0 0 0 chr5 68830616 68830645 -83706614 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1110 225 88 0 0 chr5 68830645 68830671 -83706588 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1110 2922 68 0 3 chr5 68830932 68831316 -83705943 - L1_Mus1 LINE L1 -122 6445 6063 4 1110 890 77 74 34 chr5 68831316 68831464 -83705795 + L1_Mus1 LINE L1 6414 6567 0 4 1110 525 296 7 15 chr5 68831491 68831628 -83705631 - B3A SINE B2 -62 136 1 4 1110 1592 226 57 33 chr5 68831721 68832428 -83704831 + Lx7 LINE L1 5389 6114 -1582 4 1110 2944 204 18 128 chr5 68832458 68833211 -83704048 + Lx7 LINE L1 6660 7417 -279 4 1110 464 137 0 38 chr5 68833211 68833317 -83703942 + (TA)n Simple_repeat Simple_repeat 1 102 0 4 1110 312 27 0 0 chr5 68833317 68833354 -83703905 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1110 744 140 16 76 chr5 68833355 68833540 -83703719 + Lx7 LINE L1 7418 7591 -105 4 1110 657 269 6 23 chr5 68833552 68833723 -83703536 - Lx8 LINE L1 -490 6983 6816 4 1110 288 247 21 21 chr5 68834097 68834192 -83703067 + (CATATA)n Simple_repeat Simple_repeat 1 95 0 4 1110 289 250 0 14 chr5 68834114 68834183 -83703076 + (CA)n Simple_repeat Simple_repeat 2 69 0 4 1110 25 0 0 0 chr5 68835322 68835347 -83701912 + AT_rich Low_complexity Low_complexity 1 25 0 4 1110 24 0 0 0 chr5 68836112 68836136 -83701123 + AT_rich Low_complexity Low_complexity 1 24 0 4 1110 2545 73 14 9 chr5 68836594 68836941 -83700318 - L1_Mus1 LINE L1 0 6567 6219 4 1110 3272 70 0 0 chr5 68836941 68837353 -83699906 + L1_Mm LINE L1 5472 5883 0 4 1110 533 288 14 7 chr5 68837375 68837515 -83699744 - Lx8 LINE L1 -124 7349 7209 4 1110 488 270 72 69 chr5 68838415 68838649 -83698610 - MTEa LTR MaLR 0 379 142 4 1110 772 151 4 28 chr5 68838656 68838904 -83698355 + (TA)n Simple_repeat Simple_repeat 1 241 0 4 1110 481 202 0 75 chr5 68838911 68839045 -83698214 - Lx7 LINE L1 -277 7419 7296 4 1110 262 306 154 73 chr5 68839315 68839608 -83697651 + MLT1F2 LTR MaLR 74 390 -170 4 1110 38095 17 26 0 chr5 68840025 68846054 -83691205 - L1Md_A LINE L1 0 6582 443 4 1110 562 313 6 0 chr5 68846385 68846564 -83690695 - B3A SINE B2 -16 182 3 4 1110 257 271 0 0 chr5 68847331 68847390 -83689869 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1110 398 328 85 134 chr5 68847392 68847698 -83689561 - B4 SINE B4 0 292 2 4 1110 25 0 0 0 chr5 68847799 68847824 -83689435 + AT_rich Low_complexity Low_complexity 1 25 0 4 1110 3271 21 0 0 chr5 68847869 68848247 -83689012 + L1Md_A LINE L1 5209 5586 -297 4 1110 8415 30 2 0 chr5 68848247 68849241 -83688018 + L1Md_A LINE L1 5587 6582 0 4 1110 219 36 0 0 chr5 68851654 68851682 -83685577 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1110 299 378 0 0 chr5 68851981 68852092 -83685167 - Helitron3Na_Mam RC Helitron -44 442 332 4 1110 1306 241 63 19 chr5 68852102 68852529 -83684730 + Lx9 LINE L1 7190 7635 -9 4 1110 2155 152 56 21 chr5 68853128 68853494 -83683765 - RMER17D2 LTR ERVK 0 809 336 4 1110 726 31 69 0 chr5 68853494 68853624 -83683635 + (GA)n Simple_repeat Simple_repeat 1 139 0 4 1110 2155 130 18 40 chr5 68853624 68853714 -83683545 - RMER17D2 LTR ERVK -474 335 251 4 1110 5103 87 80 102 chr5 68853714 68854627 -83682632 + RLTR13B1 LTR ERVK 1 893 0 4 1110 2155 130 18 40 chr5 68854627 68854875 -83682384 - RMER17D2 LTR ERVK -559 250 2 4 1110 4028 188 70 8 chr5 68855206 68856003 -83681256 + RLTR25A LTR ERVK 1 847 -256 4 1110 2033 152 15 78 chr5 68857820 68858219 -83679040 + RMER6B LTR ERVK 1 374 -87 4 1110 3249 244 103 2 chr5 68858573 68858699 -83678560 - Lx9 LINE L1 -22 7622 7494 4 1110 2101 127 15 21 chr5 68858699 68859030 -83678229 - ORR1A4 LTR MaLR 0 329 1 4 1110 3249 244 103 2 chr5 68859030 68859826 -83677433 - Lx9 LINE L1 -151 7493 6608 4 1110 382 318 135 29 chr5 68860139 68860346 -83676913 - MIR SINE MIR -2 260 32 4 1110 308 161 16 0 chr5 68860904 68860966 -83676293 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 1110 259 226 32 0 chr5 68861204 68861266 -83675993 + 4.5SRNA scRNA scRNA 1 64 -30 4 1110 7770 48 7 7 chr5 68862718 68862848 -83674411 + L1Md_F2 LINE L1 5606 5735 -847 4 1110 2652 20 184 3 chr5 68862848 68863196 -83674063 + IAPLTR2a LTR ERVK 1 411 0 4 1110 7770 48 7 7 chr5 68863196 68864042 -83673217 + L1Md_F2 LINE L1 5736 6582 0 4 1110 1430 80 0 34 chr5 68864200 68864407 -83672852 + MTB LTR MaLR 201 400 0 4 1110 462 90 64 0 chr5 68864407 68864485 -83672774 + MTB-int LTR MaLR 1 83 -1015 4 1110 2076 127 11 36 chr5 68864618 68864979 -83672280 + Lx3B LINE L1 6618 6969 -4 4 1110 24 67 0 0 chr5 68866969 68867014 -83670245 + AT_rich Low_complexity Low_complexity 1 45 0 4 1110 1017 73 0 0 chr5 68867358 68867495 -83669764 - L1_Mus2 LINE L1 -1 6565 6429 4 1110 33 25 0 0 chr5 68867551 68867591 -83669668 + AT_rich Low_complexity Low_complexity 1 40 0 5 1110 203 182 23 0 chr5 68867655 68867699 -83669560 + T-rich Low_complexity Low_complexity 4 48 0 5 1110 1870 250 62 15 chr5 68869675 68870142 -83667117 - Lx6 LINE L1 -177 7283 6795 5 1110 222 37 0 0 chr5 68871056 68871083 -83666176 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1110 219 103 0 0 chr5 68871201 68871240 -83666019 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 5 1110 387 0 0 0 chr5 68871248 68871291 -83665968 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1110 240 264 14 27 chr5 68872153 68872227 -83665032 + RMER15 LTR ERVL 3 75 -500 5 1110 2050 231 53 49 chr5 68872250 68872777 -83664482 + RMER15 LTR ERVL 35 563 -12 5 1110 267 375 0 0 chr5 68873733 68873813 -83663446 - MER5A DNA MER1_type -83 106 27 5 1110 444 67 0 0 chr5 68873861 68873921 -83663338 + (TATG)n Simple_repeat Simple_repeat 1 60 0 5 1110 28 48 0 0 chr5 68874041 68874083 -83663176 + AT_rich Low_complexity Low_complexity 1 42 0 5 1110 872 333 179 16 chr5 68874158 68874869 -83662390 - Lx8 LINE L1 -175 7298 6472 5 1110 565 300 80 112 chr5 68874871 68875143 -83662116 - Lx8 LINE L1 -1202 6271 5989 5 1110 984 109 0 0 chr5 68875143 68875318 -83661941 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 5 1110 1529 289 51 42 chr5 68875318 68876066 -83661193 - Lx8 LINE L1 -1485 5988 5270 5 1110 314 350 25 10 chr5 68876393 68876589 -83660670 - Lx8 LINE L1 -631 5249 5051 5 1110 1207 80 17 11 chr5 68876704 68876880 -83660379 - B2_Mm2 SINE B2 -1 194 18 5 1110 3209 30 29 162 chr5 68877061 68877609 -83659650 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1110 214 177 48 0 chr5 68878668 68878730 -83658529 + (TTTA)n Simple_repeat Simple_repeat 3 67 0 5 1110 653 308 86 45 chr5 68878730 68878831 -83658428 - Lx6 LINE L1 -21 7439 7342 5 1110 2567 160 47 27 chr5 68878831 68879228 -83658031 + RLTR19 LTR ERVK 1 401 -98 5 1110 399 21 0 0 chr5 68879228 68879276 -83657983 + (ATCTG)n Simple_repeat Simple_repeat 1 48 0 5 1110 2567 160 47 27 chr5 68879276 68879367 -83657892 + RLTR19 LTR ERVK 402 498 -1 5 1110 653 308 86 45 chr5 68879367 68879578 -83657681 - Lx6 LINE L1 -119 7341 7114 5 1110 1806 197 203 57 chr5 68879580 68880331 -83656928 + RMER6C LTR ERVK 1 716 -4 5 1110 759 309 8 43 chr5 68880340 68880643 -83656616 - Lx5 LINE L1 -818 6878 6454 5 1110 18809 97 11 1 chr5 68880713 68884163 -83653096 - L1_Mus1 LINE L1 -1 6566 3083 5 1110 2180 85 3 75 chr5 68884163 68884521 -83652738 + IAPLTR1a_Mm LTR ERVK 1 332 -5 5 1110 4963 51 6 14 chr5 68884533 68885166 -83652093 + IAPEz-int LTR ERVK 35 662 -5819 5 1110 956 59 0 0 chr5 68885166 68885285 -83651974 + IAPEz-int LTR ERVK 1359 1477 -5004 5 1110 1829 92 12 4 chr5 68885280 68885532 -83651727 + IAPEz-int LTR ERVK 2244 2497 -5183 5 1110 932 73 24 0 chr5 68885529 68885652 -83651607 + IAPEz-int LTR ERVK 4785 4910 -2770 5 1110 26289 12 6 0 chr5 68885652 68888591 -83648668 + IAPEz-int LTR ERVK 3525 6481 0 5 1110 2180 85 3 75 chr5 68888591 68888949 -83648310 + IAPLTR1a_Mm LTR ERVK 1 332 -5 5 1110 11942 104 12 4 chr5 68888951 68891799 -83645460 - L1_Mus1 LINE L1 -2795 3088 217 5 1110 1799 141 16 19 chr5 68892283 68892594 -83644665 - Lx LINE L1 0 6654 6345 5 1110 2966 118 16 39 chr5 68893511 68893996 -83643263 - MT2C_Mm LTR ERVL -1 474 1 5 1110 1038 224 65 43 chr5 68894118 68894440 -83642819 + Lx7 LINE L1 5863 6191 -1505 5 1110 1863 262 100 21 chr5 68894456 68895086 -83642173 + RMER6C LTR ERVK 9 688 -2 5 1110 1819 199 22 20 chr5 68895090 68895201 -83642058 + Lx6 LINE L1 6184 6296 -1164 5 1110 3181 33 18 5 chr5 68895201 68895592 -83641667 + MTA_Mm LTR MaLR 1 396 0 5 1110 1819 199 22 20 chr5 68895592 68895838 -83641421 + Lx6 LINE L1 6297 6542 -918 5 1110 517 209 60 39 chr5 68895834 68896015 -83641244 + Lx7 LINE L1 7470 7628 -68 5 1110 263 98 24 0 chr5 68896016 68896057 -83641202 - MT2A LTR ERVL 0 533 492 5 1110 21755 122 10 100 chr5 68897427 68900201 -83637058 + L1VL1 LINE L1 218 3007 -2876 5 1110 2023 170 132 76 chr5 68900201 68900756 -83636503 - RLTR6_Mm LTR ERV1 -68 586 1 5 1110 21755 122 10 100 chr5 68900756 68903008 -83634251 + L1VL1 LINE L1 3008 5274 -609 5 1110 3751 106 61 5 chr5 68903002 68903767 -83633492 + L1Md_F LINE L1 575 1394 -4489 5 1110 16184 80 2 2 chr5 68903766 68907002 -83630257 - L1Md_F LINE L1 -2390 3493 259 5 1110 2531 120 10 20 chr5 68907003 68907394 -83629865 - L1VL2 LINE L1 -5665 670 284 5 1110 381 43 0 0 chr5 68907601 68907648 -83629611 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1110 243 328 155 44 chr5 68909284 68909555 -83627704 - L2a LINE L2 -2 3424 3124 5 1110 2285 107 0 0 chr5 68910380 68910688 -83626571 + L1_Mur1 LINE L1 5528 5835 -51 5 1110 324 365 43 0 chr5 68910688 68910802 -83626457 - Arthur1B DNA Tip100 -564 661 543 5 1110 256 297 163 8 chr5 68910802 68910931 -83626328 - MER57C2 LTR ERV1 0 434 286 5 1110 405 0 0 0 chr5 68910950 68910995 -83626264 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1110 396 0 0 0 chr5 68910995 68911038 -83626221 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1110 304 308 158 0 chr5 68911618 68911738 -83625521 - B1F SINE Alu -10 139 1 5 1110 387 0 0 0 chr5 68912031 68912074 -83625185 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1110 481 293 95 12 chr5 68912105 68912274 -83624985 - Lx4B LINE L1 0 7058 6876 5 1110 474 185 55 9 chr5 68912355 68912464 -83624795 - Lx5 LINE L1 -1091 5959 5846 5 1110 4752 204 97 7 chr5 68912481 68912804 -83624455 - Lx4B LINE L1 -283 6775 6419 5 1110 2868 102 5 7 chr5 68912804 68913227 -83624032 - BGLII_Mus LTR ERVK 0 422 1 5 1110 4752 204 97 7 chr5 68913227 68913992 -83623267 - Lx4B LINE L1 -640 6418 5590 5 1110 3529 42 28 0 chr5 68914362 68914786 -83622473 - RLTR10C LTR ERVK 0 436 1 5 1110 201 167 0 0 chr5 68915492 68915528 -83621731 + T-rich Low_complexity Low_complexity 1 36 0 5 1110 273 369 49 49 chr5 68916227 68916412 -83620847 + B4A SINE B4 73 257 -35 5 1110 312 182 0 0 chr5 68916420 68916508 -83620751 + GA-rich Low_complexity Low_complexity 2 89 0 5 1110 24 67 0 0 chr5 68916580 68916625 -83620634 + AT_rich Low_complexity Low_complexity 1 45 0 5 1110 364 243 40 9 chr5 68917133 68917236 -83620023 - ORR1D1 LTR MaLR 0 421 285 5 1110 265 262 143 0 chr5 68917216 68917300 -83619959 - ORR1D1 LTR MaLR -204 180 85 5 1110 480 240 10 0 chr5 68917562 68917662 -83619597 - ORR1D1 LTR MaLR -273 101 1 5 1110 22 0 0 0 chr5 68918136 68918158 -83619101 + AT_rich Low_complexity Low_complexity 1 22 0 5 1110 33 25 0 0 chr5 68918180 68918220 -83619039 + AT_rich Low_complexity Low_complexity 1 40 0 5 1110 1450 11 6 11 chr5 68918254 68918435 -83618824 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 5 1110 447 145 0 0 chr5 68918953 68919036 -83618223 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1110 8125 78 6 5 chr5 68919133 68920990 -83616269 - L1_Mus1 LINE L1 0 6567 4706 5 1110 710 289 137 48 chr5 68921155 68921570 -83615689 + LTR55 LTR ERV 8 459 -89 5 1110 562 278 127 41 chr5 68921638 68921859 -83615400 + MLT1F1 LTR MaLR 175 414 -155 5 1110 35 24 0 0 chr5 68921913 68921955 -83615304 + AT_rich Low_complexity Low_complexity 1 42 0 5 1110 321 226 49 25 chr5 68921959 68922122 -83615137 + (TATAA)n Simple_repeat Simple_repeat 3 169 0 5 1110 22 0 0 0 chr5 68922149 68922171 -83615088 + AT_rich Low_complexity Low_complexity 1 22 0 5 1110 3109 65 0 3 chr5 68923446 68923835 -83613424 - L1Md_F2 LINE L1 -117 5766 5379 5 1110 6004 70 10 1 chr5 68923835 68924625 -83612634 + L1Md_F2 LINE L1 5774 6570 -12 5 1110 435 38 0 0 chr5 68924899 68924952 -83612307 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1110 261 0 0 0 chr5 68924952 68924980 -83612279 + (GA)n Simple_repeat Simple_repeat 2 30 0 5 1110 361 371 36 72 chr5 68925090 68925421 -83611838 + ORR1E LTR MaLR 39 357 -2 5 1110 191 103 0 25 chr5 68925624 68925664 -83611595 + (TTG)n Simple_repeat Simple_repeat 2 40 0 5 1110 23 33 0 0 chr5 68926129 68926159 -83611100 + AT_rich Low_complexity Low_complexity 1 30 0 5 1110 216 97 0 0 chr5 68926159 68926190 -83611069 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1110 23 0 0 0 chr5 68927571 68927594 -83609665 + AT_rich Low_complexity Low_complexity 1 23 0 5 1110 369 0 0 0 chr5 68928325 68928366 -83608893 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1110 378 309 26 58 chr5 68928369 68928687 -83608572 + L1MA5 LINE L1 4661 4930 -1213 5 1110 275 72 0 23 chr5 68928841 68928884 -83608375 + (CAA)n Simple_repeat Simple_repeat 1 42 0 5 1110 690 332 117 15 chr5 68928985 68929642 -83607617 + L1MA5 LINE L1 5338 6063 -237 5 1110 5514 255 51 93 chr5 68930478 68930813 -83606446 - Lx6 LINE L1 -13 7447 7205 5 1110 1735 102 136 11 chr5 68930813 68931100 -83606159 + Lx3_Mus LINE L1 6687 7009 0 5 1110 5652 228 56 60 chr5 68931100 68933773 -83603486 - Lx6 LINE L1 -256 7204 4467 5 1110 2485 174 42 18 chr5 68933781 68934278 -83602981 + Lx4B LINE L1 6546 7054 -4 5 1110 735 326 99 46 chr5 68934595 68935141 -83602118 + MER67C LTR ERV1 37 611 -100 5 1110 240 163 0 0 chr5 68935154 68935197 -83602062 + (CATA)n Simple_repeat Simple_repeat 1 43 0 5 1110 1212 271 105 28 chr5 68935360 68936410 -83600849 - L1MA8 LINE L1 -258 6033 4885 5 1110 230 279 174 27 chr5 68936410 68936594 -83600665 + B3 SINE B2 2 212 -4 5 1110 969 302 71 13 chr5 68936594 68936672 -83600587 - L1MA8 LINE L1 -1259 4884 4812 5 1110 218 171 49 0 chr5 68936752 68936793 -83600466 + CT-rich Low_complexity Low_complexity 2 44 0 5 1110 239 224 47 106 chr5 68937238 68937323 -83599936 - MTEa LTR MaLR -299 80 1 5 1110 791 52 0 87 chr5 68937902 68938028 -83599231 + L1_Mus1 LINE L1 6249 6363 -204 5 1110 901 75 0 26 chr5 68938026 68938174 -83599085 + L1_Mus2 LINE L1 6437 6582 0 5 1110 2491 166 68 20 chr5 68938204 68938701 -83598558 + RLTR11A LTR ERVK 7 527 -1 5 1110 309 310 70 19 chr5 68938751 68938909 -83598350 + L1M4 LINE L1 1311 1476 -5066 5 1110 452 356 144 37 chr5 68939471 68940194 -83597065 - Charlie24 DNA MER1_type -1026 1424 625 5 1110 690 289 41 5 chr5 68940710 68940905 -83596354 - B3 SINE B2 0 216 15 5 1110 6489 48 0 6 chr5 68941268 68942067 -83595192 + L1_Mus1 LINE L1 5774 6567 0 5 1110 1144 82 0 0 chr5 68942070 68942217 -83595042 + B1_Mm SINE Alu 1 147 0 5 1110 25 31 0 0 chr5 68942947 68942979 -83594280 + AT_rich Low_complexity Low_complexity 1 32 0 5 1110 222 309 180 0 chr5 68943078 68943217 -83594042 - MIRc SINE MIR -54 214 51 5 1110 188 35 35 0 chr5 68943316 68943345 -83593914 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 1110 2214 108 24 22 chr5 68943439 68943808 -83593451 + L1_Mus3 LINE L1 6269 6638 0 5 138 31 82 0 0 chr5 68943847 68943920 -83593339 + AT_rich Low_complexity Low_complexity 1 73 0 5 1111 186 71 0 0 chr5 68944030 68944058 -83593201 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1111 22 0 0 0 chr5 68944341 68944363 -83592896 + AT_rich Low_complexity Low_complexity 1 22 0 5 1111 38780 41 1 14 chr5 68944400 68950604 -83586655 - L1Md_A LINE L1 0 6582 466 6 1111 448 95 0 0 chr5 68950605 68950668 -83586591 - L1Md_A LINE L1 -6291 325 263 6 1111 490 318 48 35 chr5 68950740 68950968 -83586291 - MLT1B LTR MaLR -22 368 138 6 1111 248 211 12 50 chr5 68952392 68952472 -83584787 + CT-rich Low_complexity Low_complexity 3 79 0 6 1111 182 37 37 0 chr5 68952999 68953026 -83584233 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 6 1111 537 277 60 7 chr5 68953044 68953193 -83584066 - B3 SINE B2 -58 158 2 6 1111 861 62 0 0 chr5 68953248 68953360 -83583899 + (TTCCC)n Simple_repeat Simple_repeat 2 113 0 6 1111 288 130 0 0 chr5 68953361 68953407 -83583852 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1111 2209 15 114 0 chr5 68953743 68954005 -83583254 - RLTR10B LTR ERVK 0 292 1 6 1111 277 280 54 0 chr5 68954008 68954101 -83583158 - URR1B DNA MER1_type -3 222 125 6 1111 1486 250 78 18 chr5 68954101 68954624 -83582635 - RMER1B Other Other -36 1030 221 6 1111 254 214 26 79 chr5 68954672 68954748 -83582511 - RLTR9A LTR ERVK -296 72 1 6 1111 1153 285 47 48 chr5 68954824 68955628 -83581631 - RMER1A Other Other -556 510 1 6 1111 921 71 0 0 chr5 68955628 68955754 -83581505 + (TC)n Simple_repeat Simple_repeat 1 126 0 6 1111 2117 116 50 14 chr5 68955755 68956114 -83581145 - Lx LINE L1 -13 6641 6270 6 1111 1126 284 69 65 chr5 68956114 68956145 -83581114 - RMER1B Other Other -961 105 76 6 1111 6133 91 4 48 chr5 68956145 68957081 -83580178 - L1Md_F2 LINE L1 0 6582 5688 6 1111 648 94 0 0 chr5 68957066 68957151 -83580108 - Lx LINE L1 -375 6279 6195 6 1111 829 237 18 0 chr5 68957533 68957702 -83579557 - URR1B DNA MER1_type -41 184 13 6 1111 234 0 0 0 chr5 68958330 68958356 -83578903 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1111 631 314 19 0 chr5 68959641 68959851 -83577408 + B3 SINE B2 3 216 0 6 1111 25 31 0 0 chr5 68959853 68959885 -83577374 + AT_rich Low_complexity Low_complexity 1 32 0 6 1111 225 318 105 63 chr5 68960169 68960454 -83576805 - L1MA7 LINE L1 -89 6202 5906 6 1111 24 32 0 0 chr5 68960506 68960537 -83576722 + AT_rich Low_complexity Low_complexity 1 31 0 6 1111 342 317 0 16 chr5 68962914 68963036 -83574223 + (TATG)n Simple_repeat Simple_repeat 4 123 0 6 1111 1059 323 111 78 chr5 68964291 68964827 -83572432 - Lx8 LINE L1 -350 7123 6596 6 1111 3060 68 5 2 chr5 68964827 68965224 -83572035 - MTB LTR MaLR -2 398 1 6 1111 1059 323 111 78 chr5 68965224 68965497 -83571762 - Lx8 LINE L1 -878 6595 6287 6 1111 451 313 27 0 chr5 68965652 68965799 -83571460 - RMER15-int LTR ERVL -2550 2449 2299 6 1111 456 318 76 31 chr5 68966347 68966636 -83570623 - RMER15-int LTR ERVL -3314 1685 1384 6 1111 22 56 0 0 chr5 68966657 68966693 -83570566 + AT_rich Low_complexity Low_complexity 1 36 0 6 1111 199 54 54 0 chr5 68966834 68966871 -83570388 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 6 1111 245 286 114 0 chr5 68966947 68967017 -83570242 - Lx7 LINE L1 -412 7284 7207 6 1111 2098 298 73 124 chr5 68967090 68967686 -83569573 - Lx6 LINE L1 -170 7290 6740 6 1111 1066 83 14 0 chr5 68967686 68967831 -83569428 - B1_Mus1 SINE Alu 0 148 2 6 1111 2098 298 73 124 chr5 68967831 68967886 -83569373 - Lx6 LINE L1 -721 6739 6712 6 1111 304 40 20 20 chr5 68967886 68967937 -83569322 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 6 1111 2098 298 73 124 chr5 68967937 68968116 -83569143 - Lx6 LINE L1 -749 6711 6538 6 1111 3988 45 2 2 chr5 68968116 68968603 -83568656 + L1Md_F2 LINE L1 6094 6580 -2 6 1111 2098 298 73 124 chr5 68968603 68968633 -83568626 - Lx6 LINE L1 -923 6537 6508 6 1111 210 37 0 0 chr5 68968633 68968660 -83568599 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 6 1111 2098 298 73 124 chr5 68968660 68969029 -83568230 - Lx6 LINE L1 -953 6507 6121 6 1111 35 71 0 0 chr5 68969567 68969637 -83567622 + AT_rich Low_complexity Low_complexity 1 70 0 6 1111 208 333 39 29 chr5 68969651 68969753 -83567506 - L2a LINE L2 -274 3152 3050 6 1111 423 301 123 48 chr5 68969902 68970195 -83567064 - MLT1A0 LTR MaLR -50 315 1 6 1111 1183 124 11 0 chr5 68970330 68970507 -83566752 + B2_Mm1t SINE B2 1 179 -14 6 1111 6187 91 60 5 chr5 68970761 68971842 -83565417 - L1_Mus2 LINE L1 -1 6565 5416 6 1111 498 192 0 0 chr5 68972073 68972219 -83565040 + (TCTA)n Simple_repeat Simple_repeat 4 149 0 6 1111 26 64 0 0 chr5 68972501 68972548 -83564711 + AT_rich Low_complexity Low_complexity 1 47 0 6 1111 23 0 0 0 chr5 68972877 68972900 -83564359 + AT_rich Low_complexity Low_complexity 1 23 0 6 1111 22 70 0 0 chr5 68973231 68973274 -83563985 + AT_rich Low_complexity Low_complexity 1 43 0 6 1111 620 164 0 159 chr5 68974238 68974383 -83562876 - ORR1B1 LTR MaLR -239 155 1 6 1111 376 177 49 25 chr5 68974817 68974898 -83562361 - ORR1D2 LTR MaLR -1 369 287 6 1111 515 336 14 0 chr5 68974895 68975035 -83562224 - ORR1D2 LTR MaLR -191 179 38 6 1111 207 250 0 0 chr5 68975252 68975324 -83561935 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 6 1111 24 32 0 0 chr5 68975918 68975949 -83561310 + AT_rich Low_complexity Low_complexity 1 31 0 6 1111 756 62 27 0 chr5 68976857 68976969 -83560290 + L1_Mus2 LINE L1 6452 6566 0 6 1111 26 0 0 0 chr5 68977689 68977715 -83559544 + AT_rich Low_complexity Low_complexity 1 26 0 6 1111 1107 245 57 118 chr5 68977722 68977917 -83559342 - Lx6 LINE L1 0 7460 7266 6 1111 1885 80 4 0 chr5 68977917 68978179 -83559080 + L1_Mus2 LINE L1 6303 6565 -1 6 1111 1107 245 57 118 chr5 68978179 68978277 -83558982 - Lx6 LINE L1 -195 7265 7204 6 1111 5328 10 0 0 chr5 68978277 68978875 -83558384 + L1Md_T LINE L1 5985 6582 0 6 1111 1107 245 57 118 chr5 68978875 68979020 -83558239 - Lx6 LINE L1 -257 7203 7048 6 1111 234 0 0 0 chr5 68979328 68979354 -83557905 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1111 1148 60 0 46 chr5 68981318 68981492 -83555767 - L1Md_F2 LINE L1 0 6582 6417 6 1111 238 266 51 41 chr5 68981615 68981713 -83555546 - MER105 DNA DNA -57 147 49 6 1111 34 55 0 0 chr5 68983308 68983363 -83553896 + AT_rich Low_complexity Low_complexity 1 55 0 6 1111 802 272 176 10 chr5 68983833 68984145 -83553114 + ORR1D1 LTR MaLR 3 366 -8 6 1111 1622 270 47 17 chr5 68985065 68985257 -83552002 + L1_Rod LINE L1 760 949 -6659 6 1111 270 0 0 0 chr5 68985257 68985287 -83551972 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1111 1622 252 46 19 chr5 68985287 68985802 -83551457 + L1_Rod LINE L1 950 1490 -4357 6 1111 230 321 0 0 chr5 68987450 68987506 -83549753 - MER5A DNA MER1_type -53 136 81 6 1111 363 319 54 27 chr5 68988032 68988254 -83549005 - MER20B DNA MER1_type -345 438 211 6 1111 2103 17 0 0 chr5 68988262 68988501 -83548758 - L1Md_T LINE L1 -201 6381 6143 6 1111 1431 39 6 0 chr5 68988501 68988681 -83548578 + L1Md_T LINE L1 6402 6582 0 6 1111 1120 174 0 76 chr5 68989054 68989291 -83547968 + URR1B DNA MER1_type 7 225 0 6 1111 26 64 0 0 chr5 68989332 68989379 -83547880 + AT_rich Low_complexity Low_complexity 1 47 0 6 1111 46 54 0 0 chr5 68989460 68989534 -83547725 + AT_rich Low_complexity Low_complexity 1 74 0 6 1111 235 290 17 70 chr5 68989566 68989681 -83547578 - L2 LINE L2 -971 2448 2340 6 1111 1745 161 3 13 chr5 68991169 68991471 -83545788 - Lx LINE L1 -1342 4541 4243 6 1111 6276 167 45 6 chr5 68991468 68991543 -83545716 + Lx LINE L1 4552 4627 -1256 6 1111 219 69 0 0 chr5 68991543 68991572 -83545687 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1111 6276 167 45 6 chr5 68991572 68992026 -83545233 + Lx LINE L1 4628 5093 -790 6 1111 3663 83 6 6 chr5 68992026 68992525 -83544734 + L1_Mus4 LINE L1 6135 6633 -3 6 1111 6276 167 45 6 chr5 68992525 68993177 -83544082 + Lx LINE L1 5094 5780 -103 6 1111 2347 45 0 0 chr5 68993176 68993465 -83543794 + L1Md_F2 LINE L1 6281 6569 -13 6 1111 244 0 56 0 chr5 68993473 68993509 -83543750 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 1111 5847 120 1 2 chr5 68993509 68994367 -83542892 + Lx LINE L1 5791 6648 -6 6 1111 1899 44 0 0 chr5 68994388 68994614 -83542645 - L1_Mus2 LINE L1 -234 6332 6107 6 1111 1731 68 17 4 chr5 68994614 68994874 -83542385 + L1_Mus2 LINE L1 6324 6566 0 6 1111 236 100 0 24 chr5 68995014 68995055 -83542204 + (GGGAGA)n Simple_repeat Simple_repeat 4 43 0 6 1111 196 258 95 16 chr5 68995094 68995157 -83542102 + MIR3 SINE MIR 3 70 -138 6 1111 503 278 92 39 chr5 68995834 68996040 -83541219 - Lx8 LINE L1 -97 7376 7160 6 1111 226 267 22 65 chr5 68996050 68996142 -83541117 + MLT1A LTR MaLR 247 334 -40 6 1111 1459 261 61 22 chr5 68996662 68997121 -83540138 + Lx7 LINE L1 6345 6821 -875 6 1111 488 253 91 48 chr5 68997739 68997926 -83539333 - Lx6 LINE L1 -2 7458 7264 6 1111 3180 143 0 6 chr5 68999522 69000000 -83537259 + L1VL4 LINE L1 34 508 -5794 6 1111 349 210 0 0 chr5 69000000 69000100 -83537159 + L1VL4 LINE L1 509 608 -5694 1 1111 4797 104 64 18 chr5 69000100 69000900 -83536359 + MusHAL1 LINE L1 481 1317 -1395 2 1111 3404 131 1 161 chr5 69000897 69001617 -83535642 - L1VL2 LINE L1 -5667 668 64 3 1111 260 224 57 43 chr5 69001630 69001700 -83535559 - B2_Mm2 SINE B2 -124 71 1 4 1111 6372 99 10 1 chr5 69002083 69002974 -83534285 - Lx LINE L1 -1 6653 5755 5 1111 1466 37 5 0 chr5 69004128 69004344 -83532915 + (TCTA)n Simple_repeat Simple_repeat 1 216 0 6 1111 7972 118 57 18 chr5 69004349 69006470 -83530789 - Lx3A LINE L1 -11 6970 4791 7 1111 21 0 0 0 chr5 69006718 69006739 -83530520 + AT_rich Low_complexity Low_complexity 1 21 0 8 1111 1348 216 92 14 chr5 69007625 69007996 -83529263 + Lx9 LINE L1 7245 7644 0 9 1111 412 322 92 67 chr5 69009233 69009549 -83527710 - MER67D LTR ERV1 -171 343 20 1 1111 273 119 0 0 chr5 69009571 69009613 -83527646 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1111 779 168 96 13 chr5 69010940 69011097 -83526162 - B2_Mm2 SINE B2 -10 185 16 1 1111 312 27 0 0 chr5 69011639 69011676 -83525583 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1111 24 53 0 0 chr5 69011751 69011789 -83525470 + AT_rich Low_complexity Low_complexity 1 38 0 1 1111 216 182 0 0 chr5 69011796 69011840 -83525419 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1 1111 403 350 91 20 chr5 69011915 69012113 -83525146 + ID_B1 SINE B4 7 218 -6 1 1111 21 0 0 0 chr5 69012372 69012393 -83524866 + AT_rich Low_complexity Low_complexity 1 21 0 1 1111 428 300 61 25 chr5 69012679 69012956 -83524303 + MER63D DNA AcHobo 82 368 -693 1 1111 2400 175 77 32 chr5 69013291 69013346 -83523913 - RLTR20B3 LTR ERVK -21 556 485 1 1111 414 0 0 0 chr5 69013346 69013392 -83523867 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1111 2400 175 77 32 chr5 69013392 69013868 -83523391 - RLTR20B3 LTR ERVK -93 484 2 1 1111 29 28 0 0 chr5 69014437 69014473 -83522786 + AT_rich Low_complexity Low_complexity 1 36 0 2 1111 678 241 0 0 chr5 69014530 69014663 -83522596 + B1_Mur4 SINE Alu 3 135 -15 2 1111 621 27 0 0 chr5 69014663 69014738 -83522521 + (CCA)n Simple_repeat Simple_repeat 3 77 0 2 1111 315 0 0 0 chr5 69014738 69014773 -83522486 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1111 238 239 0 32 chr5 69014943 69014984 -83522275 + A-rich Low_complexity Low_complexity 1 40 0 2 1111 4016 158 57 1 chr5 69014984 69015682 -83521577 + RMER19A LTR ERVK 1 737 0 2 1111 238 239 0 32 chr5 69015682 69015735 -83521524 + A-rich Low_complexity Low_complexity 41 92 0 2 1111 2949 145 75 8 chr5 69015774 69016507 -83520752 + L1_Mur1 LINE L1 1021 1808 -2104 2 1111 1017 204 0 35 chr5 69016508 69016711 -83520548 - Lx6 LINE L1 -625 6835 6640 2 1111 309 242 8 24 chr5 69016784 69016907 -83520352 - Lx7 LINE L1 -149 7547 7427 3 1111 1757 237 5 16 chr5 69016906 69017292 -83519967 - Lx6 LINE L1 -835 6625 6244 2 1111 216 271 0 0 chr5 69017420 69017468 -83519791 + GA-rich Low_complexity Low_complexity 2 49 0 3 1111 189 330 90 33 chr5 69017562 69017684 -83519575 + MIR SINE MIR 60 188 -74 3 1111 369 0 0 0 chr5 69017864 69017905 -83519354 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 3 1111 312 340 20 0 chr5 69018293 69018401 -83518858 - RSINE1 SINE B4 -178 114 2 3 1111 468 281 54 15 chr5 69018713 69018843 -83518416 - ID_B1 SINE B4 -8 216 82 3 1111 1060 272 48 8 chr5 69018843 69019199 -83518060 - ORR1D2 LTR MaLR 0 370 1 3 1111 225 0 0 0 chr5 69019316 69019341 -83517918 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1111 528 16 0 0 chr5 69019341 69019401 -83517858 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 1111 234 321 9 77 chr5 69019481 69019585 -83517674 - Lx7 LINE L1 -713 6760 6650 3 1111 4594 33 0 0 chr5 69019585 69020124 -83517135 - L1Md_T LINE L1 0 6582 6044 4 1111 234 314 9 87 chr5 69020124 69020149 -83517110 - Lx7 LINE L1 -1047 6649 6629 3 1111 1009 331 69 22 chr5 69020188 69020698 -83516561 - Lx8 LINE L1 -809 6664 6131 4 1111 2610 62 26 15 chr5 69021996 69022338 -83514921 + ORR1A1 LTR MaLR 1 346 0 4 1111 23 0 0 0 chr5 69022495 69022518 -83514741 + AT_rich Low_complexity Low_complexity 1 23 0 4 1111 22 56 0 0 chr5 69022919 69022955 -83514304 + AT_rich Low_complexity Low_complexity 1 36 0 4 1111 6734 217 38 29 chr5 69022991 69024021 -83513238 - L1_Mur2 LINE L1 -2814 3063 2049 4 1111 189 0 0 0 chr5 69024021 69024042 -83513217 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1111 6734 211 33 25 chr5 69024042 69024950 -83512309 - L1_Mur2 LINE L1 -3829 2048 1038 4 1111 559 119 69 48 chr5 69024950 69025123 -83512136 - RLTR13D1 LTR ERVK -8 800 562 4 1111 2792 88 69 7 chr5 69025097 69025519 -83511740 - RLTR13D1 LTR ERVK -358 448 1 4 1111 428 245 62 15 chr5 69025519 69025683 -83511576 - L1_Mur2 LINE L1 -6042 1044 882 4 1111 183 156 0 0 chr5 69026255 69026287 -83510972 + CT-rich Low_complexity Low_complexity 1 32 0 4 1111 1194 81 6 0 chr5 69027230 69027402 -83509857 + L1Md_T LINE L1 6409 6581 -1 4 1111 1804 148 51 38 chr5 69028106 69028477 -83508782 + Lx LINE L1 6275 6650 -4 5 1111 520 306 124 83 chr5 69029077 69029473 -83507786 + MER67D LTR ERV1 4 415 -99 5 1111 762 150 34 7 chr5 69029785 69029933 -83507326 + Lx3C LINE L1 6818 6969 -7 5 1111 583 351 53 41 chr5 69030416 69030942 -83506317 + L1MA9 LINE L1 5311 5859 -453 5 1111 523 62 25 0 chr5 69030942 69031022 -83506237 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 5 1111 799 208 0 0 chr5 69031022 69031166 -83506093 - B1_Mus2 SINE Alu -3 144 1 5 1111 583 351 53 41 chr5 69031166 69031423 -83505836 + L1MA9 LINE L1 5860 6104 -208 5 1111 1211 35 7 0 chr5 69031722 69031867 -83505392 + B1_Mm SINE Alu 2 147 0 5 1111 3631 105 26 4 chr5 69032077 69032614 -83504645 - L1_Mus4 LINE L1 -3 6633 6085 5 1111 273 288 0 0 chr5 69034706 69034772 -83502487 + CT-rich Low_complexity Low_complexity 2 67 0 5 1111 222 211 0 0 chr5 69034876 69034914 -83502345 + (CACCAT)n Simple_repeat Simple_repeat 5 42 0 5 1111 628 255 147 53 chr5 69035172 69035491 -83501768 + ORR1E LTR MaLR 1 349 -10 6 1111 651 26 0 0 chr5 69036015 69036092 -83501167 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 1111 408 333 92 31 chr5 69036139 69036399 -83500860 - B4A SINE B4 -16 276 1 6 1111 4044 60 0 2 chr5 69037883 69038384 -83498875 + L1_Mus1 LINE L1 6064 6563 -4 6 1111 322 398 50 6 chr5 69038515 69038775 -83498484 + MLT1E1A LTR MaLR 343 624 0 6 1111 1022 236 8 82 chr5 69039034 69039302 -83497957 + Lx6 LINE L1 6580 6827 -633 6 1111 447 101 0 0 chr5 69039504 69039583 -83497676 + (T)n Simple_repeat Simple_repeat 1 79 0 6 1111 200 213 21 0 chr5 69041146 69041193 -83496066 - L2 LINE L2 -948 2471 2424 6 1111 196 213 0 39 chr5 69041677 69041755 -83495504 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 6 1111 1842 207 32 43 chr5 69041778 69042128 -83495131 + RMER4A LTR ERVK 8 354 -112 6 1111 1002 125 17 0 chr5 69042128 69042304 -83494955 + (TCTCCC)n Simple_repeat Simple_repeat 1 179 0 7 1111 1842 207 32 43 chr5 69042304 69042417 -83494842 + RMER4A LTR ERVK 355 466 0 6 1111 2506 86 26 0 chr5 69042614 69042962 -83494297 - IAPEY2_LTR LTR ERVK 0 357 1 7 1111 192 77 0 0 chr5 69043605 69043631 -83493628 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 1111 3438 25 2 0 chr5 69043633 69044028 -83493231 - MTA_Mm LTR MaLR 0 396 1 7 1111 1774 243 156 0 chr5 69044512 69045030 -83492229 + Lx9 LINE L1 6592 7190 -454 7 1111 322 357 58 47 chr5 69045050 69045241 -83492018 + L1M2 LINE L1 4057 4249 -1894 7 1111 300 171 0 0 chr5 69045279 69045334 -83491925 + T-rich Low_complexity Low_complexity 16 70 0 7 1111 1201 41 0 7 chr5 69045334 69045482 -83491777 - B1_Mus2 SINE Alu 0 147 1 7 1111 300 171 0 0 chr5 69045482 69045496 -83491763 + T-rich Low_complexity Low_complexity 2 15 0 7 1111 3471 184 23 1 chr5 69045511 69046157 -83491102 - Lx2B LINE L1 0 7000 6341 7 1111 1347 316 25 29 chr5 69047012 69047459 -83489800 - Lx6 LINE L1 -26 7434 6990 8 1111 270 0 0 0 chr5 69047680 69047710 -83489549 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1111 3296 3 0 0 chr5 69047851 69048219 -83489040 - L1Md_A LINE L1 0 6582 6215 8 1111 259 255 70 84 chr5 69048334 69048561 -83488698 - RMER17A LTR ERVK -250 501 278 8 1111 1186 47 0 20 chr5 69049587 69049738 -83487521 - B1_Mus1 SINE Alu 0 148 1 8 1111 543 43 0 0 chr5 69050605 69050675 -83486584 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1111 371 283 40 0 chr5 69051310 69051409 -83485850 + B3 SINE B2 5 107 -109 8 1111 609 204 14 49 chr5 69051423 69051567 -83485692 - RMER20A LTR ERVK -377 139 1 8 1111 429 165 88 0 chr5 69051567 69051658 -83485601 + URR1B DNA MER1_type 127 225 0 8 1111 31 26 0 0 chr5 69051822 69051860 -83485399 + AT_rich Low_complexity Low_complexity 1 38 0 8 1111 971 312 49 34 chr5 69051977 69052471 -83484788 - Lx9 LINE L1 -171 7473 6973 9 1111 24 77 0 0 chr5 69052604 69052656 -83484603 + AT_rich Low_complexity Low_complexity 1 52 0 9 1111 1031 117 0 0 chr5 69052725 69052870 -83484389 - B1_Mus2 SINE Alu -2 145 1 9 1111 1324 164 3 102 chr5 69053035 69053340 -83483919 - L1_Mm LINE L1 -836 5047 4773 9 1111 3688 117 21 25 chr5 69053342 69053913 -83483346 + Lx LINE L1 6083 6651 -3 9 1111 430 255 99 95 chr5 69055158 69055401 -83481858 + Lx9 LINE L1 7386 7629 -15 9 1111 448 286 75 41 chr5 69055855 69056001 -83481258 + RSINE1 SINE B4 15 165 0 9 1111 522 190 0 0 chr5 69056021 69056142 -83481117 + (TA)n Simple_repeat Simple_repeat 2 122 0 9 1111 513 214 88 132 chr5 69056992 69057197 -83480062 - RMER12 LTR ERVK -101 1221 1026 9 1111 435 19 0 0 chr5 69057197 69057249 -83480010 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 1111 1540 27 2 11 chr5 69057252 69058120 -83479139 + (GAA)n Simple_repeat Simple_repeat 1 860 0 1 1111 1281 244 111 109 chr5 69058127 69059112 -83478147 - RMER12 LTR ERVK -182 1222 1 1 1111 8548 22 1 0 chr5 69059203 69060700 -83476559 - L1Md_A LINE L1 0 6582 5085 1 1111 315 0 0 0 chr5 69060728 69060763 -83476496 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1111 246 42 41 20 chr5 69061185 69061234 -83476025 + (TTTTTG)n Simple_repeat Simple_repeat 6 55 0 1 1111 23 0 0 0 chr5 69061604 69061627 -83475632 + AT_rich Low_complexity Low_complexity 1 23 0 1 1111 910 310 73 41 chr5 69061752 69062095 -83475164 + ORR1E LTR MaLR 3 356 -3 1 1111 3889 28 0 0 chr5 69062260 69062826 -83474433 + L1Md_A LINE L1 5479 6044 -538 1 1111 3616 107 13 0 chr5 69063203 69063725 -83473534 - L1_Mus3 LINE L1 -137 6501 5973 1 1111 787 73 14 62 chr5 69063727 69063873 -83473386 + L1_Mus3 LINE L1 6500 6638 0 1 1111 2969 152 5 57 chr5 69064880 69065457 -83471802 - Lx LINE L1 -10 6644 6098 1 1111 546 333 111 0 chr5 69065532 69065721 -83471538 - ID_B1 SINE B4 -9 215 6 1 1111 545 309 21 26 chr5 69066071 69066264 -83470995 + RMER15 LTR ERVL 343 534 -41 1 1111 572 307 62 31 chr5 69066961 69067314 -83469945 + Lx9 LINE L1 5690 6053 -1591 1 1111 230 152 17 0 chr5 69067410 69067469 -83469790 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 1111 746 265 19 24 chr5 69067484 69067693 -83469566 + Lx9 LINE L1 6392 6599 -1045 1 1111 498 297 99 9 chr5 69067943 69068154 -83469105 - Lx6 LINE L1 -21 7439 7210 1 1111 267 259 0 0 chr5 69068119 69068173 -83469086 + Lx9 LINE L1 6634 6687 -957 1 1111 4975 178 74 3 chr5 69068170 69069146 -83468113 - Lx5 LINE L1 -378 6672 5628 1 1111 895 285 108 18 chr5 69069144 69069476 -83467783 + Lx9 LINE L1 7077 7438 -206 1 1111 810 58 0 0 chr5 69069480 69069584 -83467675 + (CATATA)n Simple_repeat Simple_repeat 2 105 0 1 1111 456 67 0 0 chr5 69069584 69069643 -83467616 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1111 504 299 30 30 chr5 69069755 69070055 -83467204 + L1MCa LINE L1 1226 1525 -4983 1 1111 732 170 7 0 chr5 69070060 69070212 -83467047 + Lx2 LINE L1 6745 6997 0 1 1111 255 287 82 41 chr5 69070221 69070319 -83466940 + PB1D10 SINE Alu 1 102 -15 1 1111 412 248 106 53 chr5 69070482 69070614 -83466645 - MER5A DNA MER1_type -1 188 50 1 1111 213 39 0 0 chr5 69071009 69071035 -83466224 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1111 28 0 0 0 chr5 69071057 69071085 -83466174 + AT_rich Low_complexity Low_complexity 1 28 0 1 1111 270 250 156 17 chr5 69071103 69071282 -83465977 + L1MCa LINE L1 1546 1749 -4759 1 1111 1724 263 44 13 chr5 69071298 69071838 -83465421 + Lx9 LINE L1 7081 7637 -7 1 1111 235 278 21 53 chr5 69072031 69072054 -83465205 + ORR1A3-int LTR MaLR 592 611 -1352 1 1111 1283 138 60 39 chr5 69072054 69072287 -83464972 + MT2B LTR ERVL 1 238 -363 1 1111 3588 123 22 9 chr5 69072288 69072839 -83464420 - Lx3_Mus LINE L1 -170 6839 6282 1 1111 207 281 0 0 chr5 69073569 69073633 -83463626 + (TTTA)n Simple_repeat Simple_repeat 4 67 0 1 1111 543 48 12 0 chr5 69073777 69073861 -83463398 + L1_Mus3 LINE L1 6550 6634 -4 1 1111 290 406 72 47 chr5 69074433 69074795 -83462464 - MER77 LTR ERVL -6 601 231 1 138 372 337 41 110 chr5 69074714 69075004 -83462255 - MER21B LTR ERV1 -558 305 36 1 1112 477 271 146 35 chr5 69075121 69075320 -83461939 - ORR1D1 LTR MaLR 0 374 154 1 1112 1107 285 63 78 chr5 69077317 69077763 -83459496 + RMER15 LTR ERVL 63 501 -74 1 1112 21 57 0 0 chr5 69078096 69078131 -83459128 + AT_rich Low_complexity Low_complexity 1 35 0 1 1112 418 335 76 27 chr5 69078797 69079098 -83458161 + ALINE LINE RTE 83 398 -219 1 1112 345 140 0 0 chr5 69079289 69079346 -83457913 + (AGGGGG)n Simple_repeat Simple_repeat 5 61 0 1 1112 336 346 91 18 chr5 69079356 69079521 -83457738 - B4A SINE B4 -14 278 102 1 1112 1191 68 0 0 chr5 69079540 69079688 -83457571 - B1_Mus1 SINE Alu 0 148 1 1 1112 339 89 0 0 chr5 69079697 69079753 -83457506 + (A)n Simple_repeat Simple_repeat 1 56 0 1 1112 241 271 33 17 chr5 69079768 69079828 -83457431 - B4 SINE B4 -231 61 1 1 1112 1212 41 0 0 chr5 69081693 69081840 -83455419 - B1_Mm SINE Alu 0 147 1 1 1112 27 29 0 0 chr5 69082241 69082275 -83454984 + AT_rich Low_complexity Low_complexity 1 34 0 1 1112 440 282 36 164 chr5 69083710 69083905 -83453354 + B3A SINE B2 1 170 -28 1 1112 288 0 0 0 chr5 69083905 69083937 -83453322 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1112 429 20 0 0 chr5 69083946 69083996 -83453263 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1112 237 196 0 0 chr5 69084267 69084318 -83452941 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1112 1873 193 181 109 chr5 69084326 69084961 -83452298 - RMER6C LTR ERVK -7 683 3 1 1112 184 189 0 26 chr5 69086161 69086237 -83451022 + CT-rich Low_complexity Low_complexity 2 75 0 1 1112 453 35 0 0 chr5 69086281 69086326 -83450933 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1112 780 68 0 0 chr5 69086326 69086429 -83450830 + (TCCCC)n Simple_repeat Simple_repeat 4 106 0 1 1112 453 35 0 0 chr5 69086429 69086440 -83450819 + (TC)n Simple_repeat Simple_repeat 1 11 0 1 1112 4426 64 0 5 chr5 69087098 69087663 -83449596 - L1Md_F3 LINE L1 -299 5584 5023 1 1112 8237 35 5 2 chr5 69087678 69088671 -83448588 + L1Md_F3 LINE L1 5587 6582 -2 1 1112 21 71 0 0 chr5 69088913 69088955 -83448304 + AT_rich Low_complexity Low_complexity 1 42 0 1 1112 24 0 0 0 chr5 69089324 69089348 -83447911 + AT_rich Low_complexity Low_complexity 1 24 0 1 1112 222 367 22 22 chr5 69089527 69089619 -83447640 - RSINE1 SINE B4 0 165 74 1 1112 306 299 31 0 chr5 69089865 69089962 -83447297 - PB1 SINE Alu -11 116 17 1 1112 696 56 0 0 chr5 69090959 69091048 -83446211 + (TCCCC)n Simple_repeat Simple_repeat 3 91 0 1 1112 189 0 0 0 chr5 69092355 69092376 -83444883 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1112 197 83 0 27 chr5 69093350 69093387 -83443872 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 1 1112 1617 184 4 11 chr5 69093393 69093673 -83443586 - MTC LTR MaLR -54 367 90 1 1112 271 230 9 74 chr5 69093699 69093807 -83443452 - Lx3C LINE L1 -5 6971 6871 1 1112 408 206 0 0 chr5 69093818 69093910 -83443349 + 4.5SRNA scRNA scRNA 1 92 -2 1 1112 253 344 70 25 chr5 69094230 69094388 -83442871 - MIRc SINE MIR -70 198 34 1 1112 180 179 0 0 chr5 69094576 69094615 -83442644 + CT-rich Low_complexity Low_complexity 2 40 0 1 1112 1113 101 6 11 chr5 69094617 69094798 -83442461 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1112 324 0 0 0 chr5 69094825 69094861 -83442398 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1112 2162 239 41 48 chr5 69094862 69095491 -83441768 - Lx9 LINE L1 -185 7459 6835 1 1112 505 217 25 50 chr5 69095495 69095616 -83441643 - Lx5 LINE L1 -1 7049 6932 1 1112 719 249 35 0 chr5 69095618 69095791 -83441468 - Lx9 LINE L1 -643 7001 6823 1 1112 466 172 19 57 chr5 69095800 69095838 -83441421 + Lx9 LINE L1 7351 7387 -257 1 1112 2523 68 127 0 chr5 69095838 69096193 -83441066 + MTB LTR MaLR 1 400 0 1 1112 466 172 19 57 chr5 69096193 69096259 -83441000 + Lx9 LINE L1 7388 7451 -193 1 1112 549 44 0 0 chr5 69096267 69096335 -83440924 + (TA)n Simple_repeat Simple_repeat 1 68 0 1 1112 316 297 202 8 chr5 69097507 69097636 -83439623 + HAL1-3A_ME LINE L1 2283 2436 -422 1 1112 203 89 71 0 chr5 69097981 69098037 -83439222 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1112 361 192 26 0 chr5 69098233 69098311 -83438948 - L1_Mur2 LINE L1 -1678 4199 4120 1 1112 3333 87 2 2 chr5 69098322 69098774 -83438485 - L1_Mus2 LINE L1 -1 6565 6114 1 1112 3476 79 2 0 chr5 69098774 69099240 -83438019 + L1_Mus2 LINE L1 5649 6115 -451 1 1112 1381 194 39 10 chr5 69099236 69099543 -83437716 - L1_Mur2 LINE L1 -1751 4126 3811 1 1112 844 137 35 18 chr5 69099552 69099723 -83437536 - Lx LINE L1 -4 6650 6477 1 1112 1273 155 47 0 chr5 69099723 69099955 -83437304 - L1_Mur2 LINE L1 -2739 3138 2896 1 1112 28 29 0 0 chr5 69101867 69101902 -83435357 + AT_rich Low_complexity Low_complexity 1 35 0 1 1112 236 137 20 0 chr5 69102227 69102278 -83434981 + T-rich Low_complexity Low_complexity 2 53 0 1 1112 1185 55 0 7 chr5 69104664 69104812 -83432447 + B1_Mus1 SINE Alu 2 148 0 1 1112 956 287 26 72 chr5 69104918 69105305 -83431954 - Lx8 LINE L1 -892 6581 6213 1 1112 21 36 0 0 chr5 69105337 69105365 -83431894 + AT_rich Low_complexity Low_complexity 1 28 0 1 1112 475 131 0 0 chr5 69105372 69105456 -83431803 - Lx9 LINE L1 -8 7636 7553 1 1112 5435 198 31 9 chr5 69105459 69106974 -83430285 - Lx4B LINE L1 0 7000 5412 1 1112 616 142 26 0 chr5 69106969 69107082 -83430177 + L1_Mur2 LINE L1 4103 4218 -1659 1 1112 249 290 0 0 chr5 69107162 69107231 -83430028 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1112 2492 176 78 25 chr5 69107333 69107418 -83429841 - RLTR20B3 LTR ERVK -4 573 468 1 1112 402 39 0 0 chr5 69107418 69107470 -83429789 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1112 2492 176 78 25 chr5 69107470 69107909 -83429350 - RLTR20B3 LTR ERVK -110 467 22 1 1112 302 297 0 71 chr5 69107914 69108041 -83429218 + Lx7 LINE L1 7579 7696 0 1 1112 531 128 23 0 chr5 69108068 69108154 -83429105 + GA-rich Low_complexity Low_complexity 2 89 0 1 1112 1295 67 0 11 chr5 69108154 69108334 -83428925 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1 1112 1014 143 0 0 chr5 69108335 69108510 -83428749 + (GGAA)n Simple_repeat Simple_repeat 4 178 0 1 1112 1125 128 0 0 chr5 69108517 69108697 -83428562 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1112 297 290 190 56 chr5 69108697 69108868 -83428391 + MTD LTR MaLR 203 397 -22 1 1112 269 316 37 20 chr5 69109092 69109245 -83428014 - MTEa LTR MaLR -12 367 215 1 1112 3240 182 38 8 chr5 69109303 69109928 -83427331 - Lx2B LINE L1 0 7000 6357 1 1112 12593 75 2 3 chr5 69110005 69112365 -83424894 - L1Md_F2 LINE L1 -7 6575 4222 1 1112 21 36 0 0 chr5 69112741 69112769 -83424490 + AT_rich Low_complexity Low_complexity 1 28 0 1 1112 21 57 0 0 chr5 69114529 69114564 -83422695 + AT_rich Low_complexity Low_complexity 1 35 0 1 1112 514 327 45 19 chr5 69114693 69114961 -83422298 + B4A SINE B4 2 276 -16 1 1112 28 71 0 0 chr5 69115193 69115249 -83422010 + AT_rich Low_complexity Low_complexity 1 56 0 2 1112 626 305 74 25 chr5 69115914 69116116 -83421143 + B3 SINE B2 5 216 0 2 1112 285 270 95 74 chr5 69116335 69116483 -83420776 - Tigger7 DNA MER2_type 0 2491 2341 2 1112 728 154 6 0 chr5 69116650 69116806 -83420453 + CT-rich Low_complexity Low_complexity 2 158 0 2 1112 345 24 0 0 chr5 69116806 69116848 -83420411 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1112 21 0 0 0 chr5 69117032 69117053 -83420206 + AT_rich Low_complexity Low_complexity 1 21 0 2 1112 28 0 0 0 chr5 69117248 69117276 -83419983 + AT_rich Low_complexity Low_complexity 1 28 0 2 1112 425 301 50 22 chr5 69117716 69117855 -83419404 - B1F SINE Alu 0 149 7 2 1112 280 304 0 29 chr5 69118944 69119049 -83418210 + (TATATG)n Simple_repeat Simple_repeat 2 103 0 2 1112 372 133 0 0 chr5 69119760 69119820 -83417439 + (T)n Simple_repeat Simple_repeat 1 60 0 2 1112 1200 108 17 0 chr5 69119925 69120101 -83417158 - B2_Mm1t SINE B2 -14 179 1 2 1112 29 0 0 0 chr5 69120228 69120257 -83417002 + AT_rich Low_complexity Low_complexity 1 29 0 2 1112 2330 85 3 0 chr5 69120682 69121000 -83416259 - L1_Mus2 LINE L1 0 6566 6248 2 1112 389 361 48 24 chr5 69122381 69122591 -83414668 + RMER15 LTR ERVL 296 510 -65 2 1112 3019 136 14 0 chr5 69123122 69123614 -83413645 - Lx2 LINE L1 -700 6297 5799 2 1112 282 29 0 0 chr5 69123909 69123944 -83413315 + (CCAA)n Simple_repeat Simple_repeat 1 35 0 2 1112 341 164 14 0 chr5 69124538 69124611 -83412648 + GA-rich Low_complexity Low_complexity 3 76 0 2 1112 316 123 14 14 chr5 69126311 69126385 -83410874 + T-rich Low_complexity Low_complexity 1 74 0 2 1112 3682 11 123 0 chr5 69128995 69129434 -83407825 - MT2_Mm LTR ERVL 0 493 1 2 1112 314 0 0 0 chr5 69129434 69129472 -83407787 - MERVL-int LTR ERVL 0 5485 5448 2 1112 400 123 13 40 chr5 69129472 69129548 -83407711 - ORR1A3-int LTR MaLR -1323 640 567 2 1112 40649 16 14 0 chr5 69129548 69134846 -83402413 - MERVL-int LTR ERVL -114 5371 1 2 1112 4275 12 16 0 chr5 69134846 69135331 -83401928 - MT2_Mm LTR ERVL 0 493 1 2 1112 1544 137 8 4 chr5 69136283 69136532 -83400727 - L1_Mus3 LINE L1 -6 6632 6383 2 1112 1188 288 100 17 chr5 69137330 69137800 -83399459 + Lx8 LINE L1 6833 7341 -132 2 1112 28 0 0 0 chr5 69137882 69137910 -83399349 + AT_rich Low_complexity Low_complexity 1 28 0 2 1112 5219 237 95 23 chr5 69138169 69140560 -83396699 - Lx6 LINE L1 -19 7441 4878 2 1112 288 158 0 0 chr5 69142033 69142090 -83395169 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1112 239 224 14 43 chr5 69143277 69143347 -83393912 + LTRIS5 LTR ERV1 235 302 -145 2 1112 615 117 0 0 chr5 69144512 69144606 -83392653 + (TC)n Simple_repeat Simple_repeat 1 94 0 2 1112 1000 129 11 6 chr5 69144899 69145078 -83392181 + Lx3A LINE L1 6791 6970 -11 2 1112 359 102 0 17 chr5 69145086 69145146 -83392113 + Lx3_Mus LINE L1 6504 6562 -447 2 1112 678 109 0 0 chr5 69145177 69145278 -83391981 + (TC)n Simple_repeat Simple_repeat 1 101 0 2 1112 8583 121 12 40 chr5 69145286 69146686 -83390573 - Lx3A LINE L1 -1 6980 5620 2 1112 1908 101 1 8 chr5 69146686 69146970 -83390289 + Lx7 LINE L1 5372 5649 -2047 2 1112 712 355 58 17 chr5 69147441 69147788 -83389471 + Tigger7 DNA MER2_type 11 371 -2120 2 1112 282 329 90 28 chr5 69147917 69148061 -83389198 + Tigger7 DNA MER2_type 2339 2491 0 2 1112 884 214 214 109 chr5 69148132 69148463 -83388796 - ORR1D1 LTR MaLR -8 366 1 2 1112 830 83 8 0 chr5 69148663 69148783 -83388476 + (TG)n Simple_repeat Simple_repeat 1 121 0 2 1112 314 310 18 0 chr5 69148933 69149046 -83388213 - L1ME3B LINE L1 -388 5852 5738 2 1112 281 68 0 22 chr5 69149670 69149715 -83387544 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1112 29 28 0 0 chr5 69149825 69149861 -83387398 + AT_rich Low_complexity Low_complexity 1 36 0 2 1112 676 394 7 31 chr5 69150200 69150394 -83386865 + B4 SINE B4 1 195 -97 2 1112 991 125 7 0 chr5 69150394 69150538 -83386721 + B1_Mus1 SINE Alu 2 146 -2 2 1112 676 394 7 31 chr5 69150538 69150636 -83386623 + B4 SINE B4 196 286 -6 2 1112 207 0 0 0 chr5 69150657 69150680 -83386579 + (TTAG)n Simple_repeat Simple_repeat 2 24 0 2 1112 7787 127 25 69 chr5 69150680 69151013 -83386246 - Lx3A LINE L1 -15 6966 6632 2 1112 432 82 0 0 chr5 69151013 69151074 -83386185 + (TA)n Simple_repeat Simple_repeat 2 62 0 2 1112 7787 120 50 41 chr5 69151074 69152488 -83384771 - Lx3A LINE L1 -350 6631 5233 2 1112 243 0 0 0 chr5 69152488 69152515 -83384744 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1112 6294 110 83 4 chr5 69152515 69152899 -83384360 - Lx3A LINE L1 -654 5232 4827 2 1112 3970 73 30 30 chr5 69152896 69153471 -83383788 + Lx3A LINE L1 4210 4784 -1102 2 1112 1363 129 46 0 chr5 69153680 69153921 -83383338 + L1_Mur2 LINE L1 1465 1716 -4161 2 1112 206 32 0 31 chr5 69154090 69154122 -83383137 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1112 1949 57 9 3 chr5 69155374 69155699 -83381560 - L1_Mus1 LINE L1 0 6582 6169 2 1112 1006 95 7 20 chr5 69155699 69155850 -83381409 + L1_Mus1 LINE L1 6016 6164 -403 2 1112 2644 200 69 2 chr5 69155926 69156451 -83380808 - RMER15 LTR ERVL -8 567 8 2 1112 9214 21 0 0 chr5 69156474 69157541 -83379718 + L1Md_T LINE L1 4520 5586 -297 2 1112 8984 5 0 0 chr5 69157541 69158537 -83378722 + L1Md_T LINE L1 5587 6582 0 2 1112 1189 98 0 0 chr5 69158559 69158722 -83378537 - Lx3_Mus LINE L1 -393 6616 6454 2 1112 327 121 0 0 chr5 69158722 69158780 -83378479 + Lx3A LINE L1 6922 6979 -2 2 1112 4487 70 3 16 chr5 69158780 69159081 -83378178 - L1_Mm LINE L1 -355 5528 5237 2 1112 522 0 0 0 chr5 69159081 69159139 -83378120 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1112 4487 70 3 16 chr5 69159139 69159448 -83377811 - L1_Mm LINE L1 -647 5236 4926 2 1112 230 279 36 79 chr5 69159448 69159588 -83377671 + MER72B LTR ERV1 280 413 -355 2 1112 740 77 0 0 chr5 69159592 69159683 -83377576 + L1Md_F2 LINE L1 5496 5586 -297 2 1112 7583 62 12 9 chr5 69159683 69160676 -83376583 + L1Md_F2 LINE L1 5587 6582 0 2 1112 267 93 0 0 chr5 69160708 69160751 -83376508 + (A)n Simple_repeat Simple_repeat 1 43 0 2 1112 880 77 27 27 chr5 69160867 69161013 -83376246 + L1Md_F2 LINE L1 6436 6581 -1 2 1112 29 47 0 0 chr5 69162838 69162881 -83374378 + AT_rich Low_complexity Low_complexity 1 43 0 2 1112 200 309 0 0 chr5 69162881 69162936 -83374323 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 2 1112 553 328 39 19 chr5 69163151 69163356 -83373903 - B3 SINE B2 0 216 8 2 1112 342 323 85 47 chr5 69164342 69164553 -83372706 - RMER12 LTR ERVK 0 1322 1104 2 1112 3404 150 57 14 chr5 69164823 69165474 -83371785 - RLTR22_Mur LTR ERVK -1043 805 127 2 1112 3730 127 5 7 chr5 69165669 69166250 -83371009 + Lx3A LINE L1 6402 6981 0 2 1112 27 0 0 0 chr5 69166257 69166284 -83370975 + AT_rich Low_complexity Low_complexity 1 27 0 2 1112 24 32 0 0 chr5 69166764 69166795 -83370464 + AT_rich Low_complexity Low_complexity 1 31 0 2 1112 479 157 0 0 chr5 69167754 69167837 -83369422 - Lx3C LINE L1 -637 6339 6257 2 1112 3663 146 45 2 chr5 69167838 69168457 -83368802 + Lx3B LINE L1 6325 6970 -3 2 1112 1005 111 0 25 chr5 69168491 69168648 -83368611 + B2_Mm2 SINE B2 6 158 -37 2 1112 435 63 0 0 chr5 69168649 69168712 -83368547 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 2 1112 2509 298 57 48 chr5 69168780 69168942 -83368317 - Lx8 LINE L1 -24 7449 7307 2 1112 296 44 44 0 chr5 69168942 69168987 -83368272 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 1112 2509 298 57 48 chr5 69168987 69169873 -83367386 - Lx8 LINE L1 -167 7306 6391 2 1112 806 253 65 127 chr5 69170023 69170408 -83366851 + MTE2a LTR MaLR 1 361 -18 2 1112 26 0 0 0 chr5 69170811 69170837 -83366422 + AT_rich Low_complexity Low_complexity 1 26 0 2 1112 354 347 27 60 chr5 69170848 69171032 -83366227 - B3A SINE B2 -18 180 3 2 1112 465 214 136 8 chr5 69171524 69171642 -83365617 + B1_Mur3 SINE Alu 3 135 -14 2 1112 448 312 68 29 chr5 69171847 69172289 -83364970 - L1ME2 LINE L1 -192 5972 5514 2 1112 465 62 0 0 chr5 69172706 69172771 -83364488 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1112 426 392 23 0 chr5 69172796 69173061 -83364198 + Lx8 LINE L1 6889 7159 -314 2 1112 860 121 0 6 chr5 69173108 69173282 -83363977 + (GA)n Simple_repeat Simple_repeat 2 174 0 2 1112 336 146 68 15 chr5 69173285 69173417 -83363842 + (CAGAGA)n Simple_repeat Simple_repeat 4 142 0 2 1112 27 29 0 0 chr5 69173834 69173868 -83363391 + AT_rich Low_complexity Low_complexity 1 34 0 2 1112 1510 308 40 12 chr5 69175236 69175725 -83361534 - Lx5 LINE L1 -75 6975 6486 2 1112 513 0 0 0 chr5 69175733 69175790 -83361469 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1112 390 42 0 0 chr5 69175790 69175837 -83361422 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1112 238 355 0 0 chr5 69175844 69175920 -83361339 - Lx6 LINE L1 -731 6729 6654 2 1112 3169 236 64 97 chr5 69175937 69176966 -83360293 - Lx5 LINE L1 -1 6581 5587 2 1112 262 182 15 15 chr5 69177026 69177093 -83360166 + (TA)n Simple_repeat Simple_repeat 1 67 0 2 1112 504 223 16 0 chr5 69177093 69177214 -83360045 - Lx9 LINE L1 -127 7517 7395 2 1112 1161 277 15 28 chr5 69177220 69177547 -83359712 + Lx9 LINE L1 6547 6869 -775 2 1112 1198 41 0 13 chr5 69177599 69177748 -83359511 + B1_Mus1 SINE Alu 2 148 0 2 1112 267 54 0 0 chr5 69177905 69177942 -83359317 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2 1112 1330 315 109 22 chr5 69178061 69179119 -83358140 - Lx8 LINE L1 -1 7472 6281 2 1112 450 0 0 0 chr5 69179869 69179919 -83357340 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1112 306 0 0 0 chr5 69179919 69179952 -83357307 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1112 320 160 32 32 chr5 69179955 69180078 -83357181 + (CAGAGA)n Simple_repeat Simple_repeat 4 126 0 2 1112 592 58 0 23 chr5 69180605 69180693 -83356566 - L1Md_F2 LINE L1 -59 6523 6438 2 1112 23 68 0 0 chr5 69181470 69181514 -83355745 + AT_rich Low_complexity Low_complexity 1 44 0 2 1112 24 0 0 0 chr5 69181988 69182012 -83355247 + AT_rich Low_complexity Low_complexity 1 24 0 2 1112 3351 124 49 13 chr5 69182101 69182649 -83354610 + Lx LINE L1 6074 6641 -13 2 1112 1460 288 87 41 chr5 69182650 69183190 -83354069 - Lx6 LINE L1 -179 7281 6717 2 1112 734 311 63 36 chr5 69184979 69185232 -83352027 + MTD LTR MaLR 11 270 -149 2 1112 508 197 169 0 chr5 69186085 69186227 -83351032 + Lx5 LINE L1 6884 7049 -1 3 1112 192 77 0 0 chr5 69186538 69186564 -83350695 + (TATG)n Simple_repeat Simple_repeat 3 28 0 3 1112 1891 122 81 0 chr5 69187033 69187328 -83349931 - ORR1A2 LTR MaLR -8 319 1 3 1112 931 40 16 0 chr5 69187409 69187533 -83349726 + (TC)n Simple_repeat Simple_repeat 1 126 0 3 1112 1840 236 108 2 chr5 69187695 69188120 -83349139 - Lx5 LINE L1 -11 7039 6570 3 1112 396 128 168 11 chr5 69188101 69188196 -83349063 + Lx5 LINE L1 6213 6322 -728 3 1112 525 16 0 0 chr5 69188280 69188342 -83348917 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1112 27 29 0 0 chr5 69188721 69188755 -83348504 + AT_rich Low_complexity Low_complexity 1 34 0 3 1112 34305 82 6 9 chr5 69189327 69195640 -83341619 - L1Md_F2 LINE L1 0 6582 299 3 1112 747 367 85 22 chr5 69195741 69196318 -83340941 + MLT1E3 LTR MaLR 2 614 -10 3 1112 23 33 0 0 chr5 69196667 69196697 -83340562 + AT_rich Low_complexity Low_complexity 1 30 0 3 1112 295 331 106 19 chr5 69196838 69196998 -83340261 - MLT1J1 LTR MaLR -178 266 93 3 1112 25 51 0 0 chr5 69197243 69197282 -83339977 + AT_rich Low_complexity Low_complexity 1 39 0 3 1112 3663 250 43 67 chr5 69197833 69198867 -83338392 - Lx6 LINE L1 -169 7291 6283 3 1112 2903 244 57 19 chr5 69198866 69199881 -83337378 + L1_Mur3 LINE L1 1173 2229 -3651 3 1112 3960 240 36 15 chr5 69199886 69201175 -83336084 + Lx7 LINE L1 5426 6743 -953 3 1112 1544 194 25 15 chr5 69201910 69202234 -83335025 - RMER20B LTR ERVK -300 327 1 3 1112 295 328 114 8 chr5 69202667 69202904 -83334355 - MLT1C LTR MaLR -172 295 34 3 1112 3652 153 7 0 chr5 69203233 69203815 -83333444 + Lx2B LINE L1 6398 6983 -17 3 1112 1530 298 71 41 chr5 69203845 69204704 -83332555 + L1MC1 LINE L1 5404 6290 -43 3 1112 399 294 31 31 chr5 69204704 69204834 -83332425 + LTR48 LTR ERV1 1 130 -657 3 1112 386 285 34 27 chr5 69204849 69204997 -83332262 + LTR48 LTR ERV1 623 771 -16 3 1112 21 36 0 0 chr5 69205056 69205084 -83332175 + AT_rich Low_complexity Low_complexity 1 28 0 3 1112 4771 97 67 51 chr5 69205449 69205750 -83331509 - RLTR13C2 LTR ERVK 0 855 513 3 17 2734 55 0 6 chr5 69205750 69206097 -83331162 + L1_Mus1 LINE L1 6223 6567 0 3 1113 4771 83 70 48 chr5 69206097 69206585 -83330674 - RLTR13C2 LTR ERVK -296 512 1 3 1113 238 240 28 74 chr5 69208704 69208812 -83328447 - L1MC LINE L1 -1009 5137 5035 3 1113 675 291 27 28 chr5 69209282 69209571 -83327688 - L1MC LINE L1 -2031 4115 3797 3 1113 579 66 0 0 chr5 69210569 69210645 -83326614 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 3 1113 5365 115 48 21 chr5 69210656 69211525 -83325734 - Lx3A LINE L1 -27 6954 6062 3 1113 32 26 0 0 chr5 69212273 69212312 -83324947 + AT_rich Low_complexity Low_complexity 1 39 0 3 1113 21 0 0 0 chr5 69214141 69214162 -83323097 + AT_rich Low_complexity Low_complexity 1 21 0 3 1113 717 23 0 0 chr5 69214568 69214655 -83322604 + (TC)n Simple_repeat Simple_repeat 2 88 0 3 1113 978 84 0 84 chr5 69214660 69214815 -83322444 - B1_Mus1 SINE Alu -6 142 1 3 1113 1111 68 0 7 chr5 69214830 69214978 -83322281 - B1_Mm SINE Alu 0 147 1 3 1113 2471 159 111 40 chr5 69215017 69215548 -83321711 - RLTR26 LTR ERVK -46 596 28 3 1113 471 113 0 0 chr5 69215548 69215619 -83321640 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1113 444 309 21 31 chr5 69215684 69215878 -83321381 - Lx9 LINE L1 -187 7457 7266 3 1113 604 296 28 24 chr5 69215899 69216110 -83321149 + B3 SINE B2 5 216 0 3 1113 1340 187 34 14 chr5 69216574 69216867 -83320392 + RLTR11A LTR ERVK 146 444 -84 3 1113 803 132 28 0 chr5 69216936 69217080 -83320179 - L1_Mus3 LINE L1 -11 6627 6480 3 1113 2189 40 0 14 chr5 69217171 69217447 -83319812 - L1Md_F3 LINE L1 -14 6570 6299 3 1113 366 326 58 7 chr5 69218024 69218163 -83319096 - MLT1A0 LTR MaLR -219 146 1 3 1113 221 163 0 0 chr5 69219207 69219250 -83318009 + (TAA)n Simple_repeat Simple_repeat 2 44 0 3 1113 213 146 0 0 chr5 69219567 69219615 -83317644 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1113 3585 110 74 5 chr5 69219718 69220286 -83316973 - Lx3_Mus LINE L1 -8 7001 6395 3 1113 2290 88 38 0 chr5 69220286 69220625 -83316634 - Lx3_Mus LINE L1 -783 6226 5875 3 1113 1992 140 15 12 chr5 69221007 69221347 -83315912 + Lx3B LINE L1 6633 6973 0 3 1113 21 36 0 0 chr5 69221404 69221432 -83315827 + AT_rich Low_complexity Low_complexity 1 28 0 3 1113 296 195 65 54 chr5 69222220 69222312 -83314947 - L1MA9 LINE L1 -351 5961 5869 3 1113 2709 202 81 26 chr5 69222322 69222976 -83314283 - RMER6C LTR ERVK 0 690 1 3 1113 505 350 1 59 chr5 69223120 69223323 -83313936 + MTEa LTR MaLR 5 193 -186 3 1113 601 240 52 17 chr5 69223417 69223591 -83313668 - RLTR11A2 LTR ERVK -346 181 2 3 1113 287 333 67 19 chr5 69223705 69223809 -83313450 + RSINE1 SINE B4 11 119 -46 3 1113 267 79 0 0 chr5 69223837 69223875 -83313384 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1113 251 241 60 0 chr5 69223882 69223965 -83313294 - L1M2 LINE L1 -588 5703 5616 3 1113 2037 253 85 34 chr5 69224051 69224701 -83312558 - Lx9 LINE L1 -805 6839 6157 3 1113 1332 244 50 22 chr5 69224847 69225011 -83312248 + ORR1C2 LTR MaLR 1 171 -213 3 1113 588 73 0 0 chr5 69225011 69225093 -83312166 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1113 1332 244 50 22 chr5 69225093 69225285 -83311974 + ORR1C2 LTR MaLR 172 366 -18 3 1113 1644 258 68 18 chr5 69225345 69225846 -83311413 - RLTR11A2 LTR ERVK 0 527 2 3 1113 421 304 100 39 chr5 69226343 69226603 -83310656 + L1MC LINE L1 4881 5156 -990 3 1113 236 318 112 13 chr5 69226637 69227096 -83310163 + L1M4 LINE L1 4653 5156 -990 3 1113 26 64 0 0 chr5 69227171 69227218 -83310041 + AT_rich Low_complexity Low_complexity 1 47 0 3 1113 364 217 12 0 chr5 69227280 69227372 -83309887 + L1M4 LINE L1 5359 5451 -722 3 1113 490 240 26 8 chr5 69227610 69227740 -83309519 - ORR1D1 LTR MaLR -269 125 3 3 1113 816 97 0 0 chr5 69229043 69229167 -83308092 + (CA)n Simple_repeat Simple_repeat 2 125 0 3 1113 25 65 0 0 chr5 69229622 69229668 -83307591 + AT_rich Low_complexity Low_complexity 1 46 0 3 1113 776 71 9 0 chr5 69230309 69230421 -83306838 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 3 1113 3416 123 7 20 chr5 69230421 69230961 -83306298 - Lx3_Mus LINE L1 -21 6988 6456 3 1113 5103 106 57 48 chr5 69230960 69232335 -83304924 + Lx3_Mus LINE L1 5082 6444 -565 3 1113 26 0 0 0 chr5 69233328 69233354 -83303905 + AT_rich Low_complexity Low_complexity 1 26 0 3 1113 383 322 17 0 chr5 69233501 69233616 -83303643 + RSINE1 SINE B4 14 130 -35 3 1113 21 71 0 0 chr5 69234324 69234366 -83302893 + AT_rich Low_complexity Low_complexity 1 42 0 3 1113 21 0 0 0 chr5 69234562 69234583 -83302676 + AT_rich Low_complexity Low_complexity 1 21 0 3 1113 26 0 0 0 chr5 69235334 69235360 -83301899 + AT_rich Low_complexity Low_complexity 1 26 0 3 1113 180 0 0 0 chr5 69235766 69235786 -83301473 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1113 718 290 69 20 chr5 69236046 69236228 -83301031 + B3 SINE B2 3 197 -19 3 1113 495 0 0 0 chr5 69236228 69236283 -83300976 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1113 513 32 0 0 chr5 69236283 69236345 -83300914 + (TA)n Simple_repeat Simple_repeat 1 63 0 3 1113 718 290 69 20 chr5 69236345 69236365 -83300894 + B3 SINE B2 198 215 -1 3 1113 194 266 188 0 chr5 69237081 69237145 -83300114 + L2b LINE L2 3298 3373 -2 3 1113 24 0 0 0 chr5 69238309 69238333 -83298926 + AT_rich Low_complexity Low_complexity 1 24 0 3 1113 1038 313 33 0 chr5 69238928 69239292 -83297967 + Lx8 LINE L1 6581 6956 -517 3 1113 8132 36 0 0 chr5 69239375 69240670 -83296589 - L1Md_T LINE L1 0 6582 5288 3 1113 35667 16 0 0 chr5 69240680 69245549 -83291710 - L1Md_A LINE L1 0 6582 1713 3 1113 416 275 141 16 chr5 69245563 69245748 -83291511 + Lx8 LINE L1 7010 7217 -256 3 1113 356 12 95 36 chr5 69245752 69245836 -83291423 + (CAAAA)n Simple_repeat Simple_repeat 2 90 0 3 1113 561 90 0 0 chr5 69245896 69245985 -83291274 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 3 1113 35 0 0 0 chr5 69246103 69246138 -83291121 + AT_rich Low_complexity Low_complexity 1 35 0 3 1113 1554 261 72 134 chr5 69247149 69248013 -83289246 + RLTR22_Mur LTR ERVK 1 810 -1038 3 1113 1145 161 41 5 chr5 69248030 69248248 -83289011 + Lx2B LINE L1 5859 6084 -916 3 1113 2713 242 59 11 chr5 69248223 69248970 -83288289 + Lx3C LINE L1 6159 6941 -35 3 1113 198 0 0 0 chr5 69248987 69249009 -83288250 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 3 1113 267 125 67 22 chr5 69249013 69249103 -83288156 + GA-rich Low_complexity Low_complexity 3 96 0 3 1113 267 227 0 0 chr5 69250065 69250131 -83287128 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 1113 279 79 0 0 chr5 69250149 69250187 -83287072 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 3 1113 2780 3 0 0 chr5 69250985 69251296 -83285963 + L1Md_A LINE L1 6272 6582 0 3 1113 515 321 85 15 chr5 69251675 69251847 -83285412 + B3 SINE B2 1 188 -28 3 1113 1457 46 0 0 chr5 69251847 69252021 -83285238 - B2_Mm1a SINE B2 -19 174 1 3 1113 515 321 85 15 chr5 69252021 69252047 -83285212 + B3 SINE B2 189 212 -4 3 1113 1257 212 64 56 chr5 69252106 69252466 -83284793 - RMER6C LTR ERVK 0 690 328 3 1113 2992 154 33 8 chr5 69252469 69252985 -83284274 - Lx LINE L1 -5 6649 6121 3 1113 1244 135 5 0 chr5 69252985 69253192 -83284067 + L1_Mur2 LINE L1 4602 4809 -1068 3 1113 1514 81 9 7 chr5 69253192 69253431 -83283828 + MTB LTR MaLR 180 421 0 3 1113 458 181 0 41 chr5 69253437 69253535 -83283724 + L1_Mur2 LINE L1 4859 4952 -928 3 1113 895 148 13 7 chr5 69253528 69253678 -83283581 + L1_Mm LINE L1 5056 5206 -677 3 1113 1120 149 16 0 chr5 69253676 69253864 -83283395 + Lx LINE L1 5874 6064 -590 3 1113 1226 176 227 0 chr5 69253865 69254160 -83283099 - RMER6C LTR ERVK -358 362 1 3 1113 22 0 0 0 chr5 69254225 69254247 -83283012 + AT_rich Low_complexity Low_complexity 1 22 0 3 1113 647 207 36 36 chr5 69254664 69254804 -83282455 - B1_Mur4 SINE Alu -9 141 2 3 1113 1721 223 21 13 chr5 69255600 69255982 -83281277 + Lx4B LINE L1 6667 7051 -7 3 1113 1033 279 59 22 chr5 69256235 69256557 -83280702 - ORR1D1 LTR MaLR -40 334 1 4 1113 495 138 0 0 chr5 69257771 69257858 -83279401 + (CA)n Simple_repeat Simple_repeat 1 87 0 4 1113 3424 129 26 8 chr5 69257984 69258712 -83278547 + L1VL4 LINE L1 371 1110 -2449 4 1113 7196 101 25 1 chr5 69258709 69259996 -83277263 + L1_Mus4 LINE L1 5310 6632 -4 4 1113 303 133 13 13 chr5 69260761 69260837 -83276422 - Lx6 LINE L1 -27 7433 7358 4 1113 219 36 0 0 chr5 69260994 69261022 -83276237 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1113 329 295 66 108 chr5 69261022 69261189 -83276070 - RSINE1 SINE B4 0 165 6 4 1113 238 132 0 73 chr5 69261181 69261222 -83276037 - MER119 DNA MER1_type -251 332 295 4 1113 243 0 0 0 chr5 69261355 69261382 -83275877 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1113 885 116 0 0 chr5 69262236 69262382 -83274877 + (TG)n Simple_repeat Simple_repeat 1 146 0 4 1113 286 369 56 81 chr5 69262494 69262937 -83274322 + MLT2B3 LTR ERVL 1 432 -122 4 1113 286 257 132 14 chr5 69264814 69265027 -83272232 - L1M5 LINE L1 -612 5832 5595 4 1113 357 302 87 0 chr5 69265062 69265211 -83272048 + L1MA4 LINE L1 5777 5938 -362 4 1113 1565 339 59 65 chr5 69265464 69266524 -83270735 + Lx8 LINE L1 6237 7290 -183 4 1113 2403 112 28 31 chr5 69266907 69267295 -83269964 - Lx3_Mus LINE L1 -2 7007 6621 4 1113 279 240 9 28 chr5 69269934 69270041 -83267218 + (TA)n Simple_repeat Simple_repeat 2 106 0 4 1113 1423 144 0 0 chr5 69270086 69270308 -83266951 - L1_Mus3 LINE L1 -1027 4856 4635 4 1113 6836 142 22 1 chr5 69270305 69272023 -83265236 + L1_Mus3 LINE L1 4872 6632 -6 4 1113 797 110 8 0 chr5 69272033 69272160 -83265099 + (GGAA)n Simple_repeat Simple_repeat 2 129 0 4 1113 243 348 116 0 chr5 69272803 69272967 -83264292 + LTR33 LTR ERVL 242 424 -91 4 1113 30 0 0 0 chr5 69273072 69273102 -83264157 + AT_rich Low_complexity Low_complexity 1 30 0 4 1113 290 312 35 129 chr5 69273392 69273594 -83263665 - MER2 DNA MER2_type -13 332 150 4 1113 26 30 0 0 chr5 69273675 69273708 -83263551 + AT_rich Low_complexity Low_complexity 1 33 0 4 1113 21406 127 42 11 chr5 69274012 69278357 -83258902 + L1Md_F LINE L1 180 4662 -1221 4 1113 6256 54 73 0 chr5 69278354 69279184 -83258075 - L1Md_F2 LINE L1 0 6582 5692 4 1113 5325 69 4 0 chr5 69279181 69279875 -83257384 + L1Md_F2 LINE L1 5000 5696 -187 4 1113 8339 90 18 2 chr5 69279865 69281750 -83255509 + L1_Mus1 LINE L1 4646 6565 -2 4 1113 524 261 60 0 chr5 69282091 69282225 -83255034 - RMER1C Other Other -778 564 423 4 1113 2088 242 37 11 chr5 69282205 69282743 -83254516 + RMER1C Other Other 790 1341 -1 4 1113 241 45 0 0 chr5 69283674 69283718 -83253541 + L1Md_T LINE L1 6539 6582 0 4 1113 21 0 0 0 chr5 69283771 69283792 -83253467 + AT_rich Low_complexity Low_complexity 1 21 0 4 1113 405 274 70 87 chr5 69285567 69285739 -83251520 + MLT1E2 LTR MaLR 1 169 -458 4 1113 270 336 63 9 chr5 69285862 69285973 -83251286 - Lx8 LINE L1 -215 7258 7142 4 1113 363 157 0 0 chr5 69286128 69286198 -83251061 + (TG)n Simple_repeat Simple_repeat 1 70 0 4 1113 764 345 13 40 chr5 69286239 69286541 -83250718 - ORR1E LTR MaLR -64 295 2 4 1113 688 178 282 0 chr5 69286569 69286743 -83250516 + RMER6D LTR ERVK 1 223 -497 4 1113 885 331 75 20 chr5 69286762 69287172 -83250087 - ORR1E-int LTR MaLR -191 1601 998 4 1113 181 0 69 0 chr5 69287244 69287273 -83249986 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 4 1113 29 0 0 0 chr5 69287435 69287464 -83249795 + AT_rich Low_complexity Low_complexity 1 29 0 4 1113 345 430 14 5 chr5 69287525 69287733 -83249526 + MER44B DNA MER2_type 7 216 -334 4 1113 255 61 0 0 chr5 69287733 69287766 -83249493 + (TAA)n Simple_repeat Simple_repeat 1 33 0 4 1113 350 42 0 20 chr5 69288070 69288119 -83249140 + (TAA)n Simple_repeat Simple_repeat 3 50 0 4 1113 479 298 16 0 chr5 69288132 69288256 -83249003 + ID_B1 SINE B4 78 203 -21 4 1113 375 141 12 12 chr5 69288448 69288534 -83248725 + Lx2B LINE L1 6911 6996 -4 4 1113 978 291 68 10 chr5 69290011 69290406 -83246853 + MTD LTR MaLR 2 419 0 4 1113 246 62 0 0 chr5 69291461 69291493 -83245766 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 4 1113 7573 106 19 12 chr5 69291493 69292642 -83244617 - Lx3_Mus LINE L1 -21 6988 5832 4 1113 2961 102 0 0 chr5 69292639 69293040 -83244219 + Lx3_Mus LINE L1 5425 5825 -61 4 1113 468 0 0 0 chr5 69293056 69293108 -83244151 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 4 1113 238 203 0 68 chr5 69293155 69293229 -83244030 + T-rich Low_complexity Low_complexity 6 74 0 4 1113 25 0 0 0 chr5 69293256 69293281 -83243978 + AT_rich Low_complexity Low_complexity 1 25 0 4 1113 498 83 0 0 chr5 69293290 69293362 -83243897 + (TGG)n Simple_repeat Simple_repeat 3 74 0 4 1113 180 77 0 0 chr5 69293364 69293390 -83243869 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1113 437 387 99 0 chr5 69293400 69293622 -83243637 - B4A SINE B4 -6 286 43 4 1113 4769 224 32 17 chr5 69293852 69295035 -83242224 + Lx7 LINE L1 4627 5827 -53 4 1113 573 219 16 0 chr5 69295038 69295161 -83242098 + RMER15 LTR ERVL 451 575 0 4 1113 659 256 24 6 chr5 69295162 69295327 -83241932 + Lx7 LINE L1 6246 6413 -1283 4 1113 894 318 47 19 chr5 69295586 69295951 -83241308 + MTEb LTR MaLR 3 377 -2 4 1113 29 0 0 0 chr5 69296005 69296034 -83241225 + AT_rich Low_complexity Low_complexity 1 29 0 4 1113 531 122 0 0 chr5 69296526 69296616 -83240643 + (GGGA)n Simple_repeat Simple_repeat 4 93 0 4 1113 387 351 81 32 chr5 69297124 69297553 -83239706 - L2b LINE L2 -150 3276 2803 4 1113 275 313 12 0 chr5 69297586 69297669 -83239590 + MER67A LTR ERV1 1 84 -459 4 1113 363 23 0 0 chr5 69298124 69298168 -83239091 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1113 435 396 14 23 chr5 69298194 69298411 -83238848 - B4A SINE B4 -24 268 54 4 1113 972 58 0 80 chr5 69298364 69298515 -83238744 + B1_Mm SINE Alu 9 147 0 4 1113 189 0 0 0 chr5 69298515 69298536 -83238723 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1113 514 206 73 44 chr5 69298687 69298824 -83238435 + MT2A LTR ERVL 11 151 -382 4 1113 4726 146 15 10 chr5 69298824 69299626 -83237633 + RLTR22_Mur LTR ERVK 1 806 -1042 4 1113 1434 89 9 5 chr5 69299750 69299965 -83237294 - L1_Mus3 LINE L1 -12 6626 6411 4 1113 1218 108 12 2 chr5 69299965 69300158 -83237101 + L1_Mus3 LINE L1 6253 6414 -224 4 1113 403 337 40 23 chr5 69300217 69300390 -83236869 + RMER12 LTR ERVK 1101 1276 -46 4 1113 1364 264 25 49 chr5 69300401 69300816 -83236443 + MT2A LTR ERVL 77 554 -30 4 1113 193 125 11 81 chr5 69300841 69300928 -83236331 + (TTATA)n Simple_repeat Simple_repeat 5 85 0 4 1113 431 270 70 70 chr5 69301259 69301502 -83235757 - Lx8 LINE L1 -29 7444 7202 4 1113 327 350 121 54 chr5 69301546 69301878 -83235381 - L1ME2 LINE L1 -1 6163 5810 4 1113 553 381 22 44 chr5 69301901 69302261 -83234998 + MLT1A LTR MaLR 23 374 0 4 1113 245 302 54 0 chr5 69302800 69302929 -83234330 - L1ME2 LINE L1 -1127 5019 4884 4 1113 612 153 0 0 chr5 69302980 69303117 -83234142 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 4 1113 260 382 26 24 chr5 69305299 69305441 -83231818 + MIR SINE MIR 17 160 -108 4 1113 306 0 0 0 chr5 69306374 69306408 -83230851 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1113 430 274 7 7 chr5 69306940 69307076 -83230183 + (CA)n Simple_repeat Simple_repeat 1 136 0 4 1113 387 0 0 0 chr5 69307088 69307131 -83230128 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1113 288 0 0 0 chr5 69307131 69307162 -83230097 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1113 689 281 15 29 chr5 69307177 69307382 -83229877 - Lx7 LINE L1 -377 7319 7118 4 1113 5779 209 50 13 chr5 69307879 69309658 -83227601 - Lx5 LINE L1 -102 6948 5091 4 1113 2691 202 49 34 chr5 69309654 69310125 -83227134 - Lx5 LINE L1 -3930 1947 1471 4 1113 186 43 0 0 chr5 69310125 69310148 -83227111 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1113 2691 228 50 20 chr5 69310148 69310645 -83226614 - Lx5 LINE L1 -4407 1470 895 4 1113 23 33 0 0 chr5 69310837 69310867 -83226392 + AT_rich Low_complexity Low_complexity 1 30 0 4 1113 297 0 0 0 chr5 69312006 69312039 -83225220 + (CCA)n Simple_repeat Simple_repeat 3 35 0 4 1113 789 75 15 15 chr5 69314180 69314316 -83222943 + (TAGA)n Simple_repeat Simple_repeat 4 139 0 4 1113 212 369 82 33 chr5 69314558 69314740 -83222519 + L2a LINE L2 3209 3399 -27 4 1113 22 0 0 0 chr5 69316434 69316456 -83220803 + AT_rich Low_complexity Low_complexity 1 22 0 4 1113 25 0 0 0 chr5 69316931 69316956 -83220303 + AT_rich Low_complexity Low_complexity 1 25 0 4 1113 2212 94 22 75 chr5 69317828 69318229 -83219030 - L1_Mus3 LINE L1 -3 6635 6256 4 1113 722 42 0 11 chr5 69318303 69318398 -83218861 + (GA)n Simple_repeat Simple_repeat 1 94 0 4 1113 2285 241 68 30 chr5 69318751 69319458 -83217801 + Lx9 LINE L1 6909 7642 -2 4 1113 390 371 83 0 chr5 69320677 69320809 -83216450 + RSINE1 SINE B4 3 145 -20 4 1113 441 0 0 0 chr5 69320813 69320862 -83216397 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1113 555 355 58 78 chr5 69321176 69321524 -83215735 - ORR1E LTR MaLR -15 344 4 4 1113 219 327 0 0 chr5 69321588 69321643 -83215616 - B4 SINE B4 -147 145 91 4 1113 877 338 58 9 chr5 69321798 69322124 -83215135 + ORR1E LTR MaLR 7 348 -11 4 1113 789 79 0 0 chr5 69322167 69322281 -83214978 + (TG)n Simple_repeat Simple_repeat 2 115 0 4 1113 3346 192 18 25 chr5 69322419 69323236 -83214023 + RLTR25A LTR ERVK 1 795 -233 4 1113 3982 165 12 40 chr5 69323237 69324007 -83213252 + L1_Mm LINE L1 4862 5609 -274 4 1113 973 252 58 0 chr5 69324005 69324279 -83212980 + Lx3C LINE L1 6685 6974 -2 4 1113 28 29 0 0 chr5 69324285 69324320 -83212939 + AT_rich Low_complexity Low_complexity 1 35 0 4 1113 515 16 16 0 chr5 69324840 69324904 -83212355 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 4 1113 23 54 0 0 chr5 69324936 69324973 -83212286 + AT_rich Low_complexity Low_complexity 1 37 0 4 1113 21 0 0 0 chr5 69325090 69325111 -83212148 + AT_rich Low_complexity Low_complexity 1 21 0 4 1113 212 248 8 34 chr5 69325171 69325288 -83211971 + A-rich Low_complexity Low_complexity 4 117 0 5 1113 251 100 113 14 chr5 69325178 69325249 -83212010 + (TATAA)n Simple_repeat Simple_repeat 4 81 0 5 1113 379 319 99 47 chr5 69325298 69325763 -83211496 + L1M2 LINE L1 4977 5491 -800 5 1113 204 40 0 0 chr5 69325763 69325788 -83211471 + (CAT)n Simple_repeat Simple_repeat 3 27 0 5 1113 379 301 181 40 chr5 69325788 69325957 -83211302 + L1M2 LINE L1 5492 5671 -620 5 1113 604 246 0 24 chr5 69326025 69326199 -83211060 + Lx6 LINE L1 7111 7258 -202 5 1113 429 70 0 0 chr5 69326201 69326258 -83211001 + (GTTTG)n Simple_repeat Simple_repeat 2 58 0 5 1113 524 280 99 16 chr5 69326258 69326450 -83210809 + Lx6 LINE L1 7252 7459 -1 5 1113 312 315 81 20 chr5 69326461 69326707 -83210552 + L1MEc LINE L1 1906 2166 -4234 5 1113 893 251 38 19 chr5 69326729 69326940 -83210319 - RMER1C Other Other -344 998 784 5 1113 1598 178 6 22 chr5 69326950 69327261 -83209998 + RLTR10E LTR ERVK 1 306 -5 5 1113 386 219 40 87 chr5 69327269 69327419 -83209840 + IAPEY3-int LTR ERVK 1 143 -7537 5 1113 1969 260 55 16 chr5 69327470 69328379 -83208880 + IAPEY3-int LTR ERVK 535 1566 -6015 5 1113 334 193 0 0 chr5 69328396 69328453 -83208806 + IAP-d-int LTR ERVK 447 503 -6039 5 1113 1356 140 87 0 chr5 69328453 69328682 -83208577 + IAP-d-int LTR ERVK 5007 5255 -1287 5 1113 4097 110 18 1 chr5 69328682 69329360 -83207899 + IAPEY3-int LTR ERVK 6965 7680 0 5 1113 1621 178 6 19 chr5 69329360 69329677 -83207582 + RLTR10E LTR ERVK 1 390 0 5 1113 299 306 82 1 chr5 69329681 69329777 -83207482 - RMER1C Other Other -799 543 377 5 1113 351 324 78 35 chr5 69330061 69330202 -83207057 - B1F SINE Alu -2 147 1 5 1113 1880 209 101 2 chr5 69330239 69330519 -83206740 - Lx5 LINE L1 -4 7046 6744 5 1113 510 17 0 0 chr5 69330519 69330578 -83206681 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1113 1880 209 101 2 chr5 69330578 69330704 -83206555 - Lx5 LINE L1 -307 6743 6602 5 1113 21 0 0 0 chr5 69330704 69330725 -83206534 + AT_rich Low_complexity Low_complexity 1 21 0 5 1113 225 288 17 0 chr5 69331587 69331646 -83205613 + MIR SINE MIR 184 243 -19 5 1113 831 266 10 10 chr5 69331982 69332187 -83205072 + MTC LTR MaLR 209 413 -8 5 1113 479 338 95 0 chr5 69332290 69332512 -83204747 - MTE-int LTR MaLR -164 1416 1174 5 1113 294 382 69 23 chr5 69332519 69332822 -83204437 + MT2A LTR ERVL 146 462 -71 5 1113 408 389 51 47 chr5 69332976 69333251 -83204008 + B4A SINE B4 2 277 -15 5 1113 222 37 0 0 chr5 69333307 69333334 -83203925 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1113 23 0 0 0 chr5 69333436 69333459 -83203800 + AT_rich Low_complexity Low_complexity 1 23 0 5 1113 515 222 17 25 chr5 69333480 69333600 -83203659 - ORR1D2 LTR MaLR -2 368 250 5 1113 703 272 161 25 chr5 69333609 69333933 -83203326 - ORR1D2 LTR MaLR 0 370 3 5 1113 1223 94 0 6 chr5 69334050 69334231 -83203028 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 5 1113 261 0 0 0 chr5 69334231 69334260 -83202999 + (TC)n Simple_repeat Simple_repeat 2 30 0 5 1113 894 83 74 15 chr5 69334263 69334398 -83202861 - B1_Mus1 SINE Alu -5 143 1 5 1113 252 203 56 42 chr5 69335754 69335826 -83201433 - L1MA5 LINE L1 -365 5935 5863 5 1113 292 291 110 0 chr5 69335842 69336024 -83201235 + L1MA9 LINE L1 6083 6284 -28 5 139 8705 121 15 14 chr5 69336258 69337865 -83199394 + Lx3B LINE L1 5364 6970 -3 5 1114 596 148 9 0 chr5 69337894 69338002 -83199257 + GA-rich Low_complexity Low_complexity 4 112 0 5 1114 1428 218 3 10 chr5 69338020 69338312 -83198947 + Lx2B LINE L1 6700 6989 -11 5 1114 23 0 0 0 chr5 69338527 69338550 -83198709 + AT_rich Low_complexity Low_complexity 1 23 0 5 1114 58 28 0 0 chr5 69338647 69338719 -83198540 + AT_rich Low_complexity Low_complexity 1 72 0 5 1114 364 281 122 31 chr5 69339126 69339367 -83197892 - Tigger7 DNA MER2_type -1 2490 2233 5 1114 369 0 0 0 chr5 69340038 69340079 -83197180 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1114 209 102 59 39 chr5 69341555 69341606 -83195653 + A-rich Low_complexity Low_complexity 3 54 0 5 1114 2431 177 0 38 chr5 69342449 69342920 -83194339 + RLTR11B LTR ERVK 1 453 0 5 1114 4302 55 8 0 chr5 69342930 69343460 -83193799 + L1_Mus2 LINE L1 6033 6566 0 5 1114 1364 86 0 11 chr5 69344413 69344602 -83192657 + L1_Mus1 LINE L1 6381 6567 0 5 1114 333 271 28 7 chr5 69347740 69347881 -83189378 + L1MA7 LINE L1 6104 6247 -44 5 1114 348 324 65 75 chr5 69348899 69349099 -83188160 - ORR1E LTR MaLR -149 210 13 5 1114 473 44 0 14 chr5 69349099 69349168 -83188091 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1114 646 308 117 39 chr5 69349439 69349825 -83187434 + MTE2a LTR MaLR 1 379 0 5 1114 21 36 0 0 chr5 69350061 69350089 -83187170 + AT_rich Low_complexity Low_complexity 1 28 0 5 1114 624 14 0 0 chr5 69350736 69350809 -83186450 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1114 3559 65 22 0 chr5 69350892 69351355 -83185904 + L1_Mus2 LINE L1 6092 6564 -2 5 1114 33 43 0 0 chr5 69352629 69352676 -83184583 + AT_rich Low_complexity Low_complexity 1 47 0 5 1114 1181 284 103 26 chr5 69353182 69353581 -83183678 + RLTR20A2 LTR ERVK 46 486 -92 5 1114 417 20 0 0 chr5 69353581 69353631 -83183628 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1114 1181 284 103 26 chr5 69353631 69353726 -83183533 + RLTR20A2 LTR ERVK 487 578 0 5 1114 501 320 163 25 chr5 69353973 69354329 -83182930 + MLT1D LTR MaLR 90 494 -11 5 1114 423 0 0 0 chr5 69354592 69354639 -83182620 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 5 1114 537 58 0 0 chr5 69355410 69355479 -83181780 + (TA)n Simple_repeat Simple_repeat 1 69 0 5 1114 783 326 21 21 chr5 69355492 69355777 -83181482 - B4A SINE B4 -2 290 6 5 1114 2764 117 35 33 chr5 69356093 69356545 -83180714 - RLTR11B LTR ERVK 0 453 1 5 1114 24 0 0 0 chr5 69357001 69357025 -83180234 + AT_rich Low_complexity Low_complexity 1 24 0 5 1114 732 62 0 26 chr5 69357232 69357348 -83179911 + L1_Mus2 LINE L1 6453 6565 -1 5 1114 189 132 0 0 chr5 69359537 69359575 -83177684 + (TAAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1114 1137 82 0 0 chr5 69359733 69359880 -83177379 + B1_Mus2 SINE Alu 1 147 0 5 1114 315 0 0 0 chr5 69359887 69359922 -83177337 + (GA)n Simple_repeat Simple_repeat 2 36 0 5 1114 333 0 0 0 chr5 69359922 69359959 -83177300 + (GAA)n Simple_repeat Simple_repeat 3 39 0 5 1114 615 71 10 20 chr5 69359959 69360059 -83177200 + (GGAA)n Simple_repeat Simple_repeat 2 100 0 5 1114 189 0 0 0 chr5 69360137 69360158 -83177101 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 5 1114 2347 110 3 3 chr5 69360186 69360513 -83176746 + ORR1A2 LTR MaLR 1 327 0 5 1114 960 312 53 17 chr5 69360513 69360868 -83176391 - Lx8 LINE L1 -146 7327 6960 5 1114 754 284 25 5 chr5 69360876 69361074 -83176185 - Lx8 LINE L1 -941 6532 6331 5 1114 573 311 115 15 chr5 69361255 69361821 -83175438 - Lx7 LINE L1 -1662 5982 5333 5 1114 195 42 0 0 chr5 69361873 69361897 -83175362 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 5 1114 4359 122 20 3 chr5 69361897 69362557 -83174702 - Lx3A LINE L1 -15 6966 6296 5 1114 4775 54 16 2 chr5 69362573 69363183 -83174076 - L1Md_F2 LINE L1 -4 6578 5960 5 1114 3139 99 20 33 chr5 69363189 69363703 -83173556 - Lx3_Mus LINE L1 -707 6302 5793 5 1114 1166 319 33 40 chr5 69363715 69364482 -83172777 - L1M2 LINE L1 -847 5296 4536 5 1114 483 273 50 0 chr5 69364566 69364687 -83172572 - B3A SINE B2 -69 129 3 5 1114 1122 118 36 93 chr5 69364698 69364923 -83172336 - L1_Mus3 LINE L1 -2 6636 6425 5 1114 21 71 0 0 chr5 69366071 69366113 -83171146 + AT_rich Low_complexity Low_complexity 1 42 0 5 1114 546 157 0 0 chr5 69366711 69366832 -83170427 + (TAGA)n Simple_repeat Simple_repeat 2 122 0 5 1114 408 132 0 0 chr5 69366922 69367005 -83170254 + (TC)n Simple_repeat Simple_repeat 2 84 0 5 1114 267 54 0 0 chr5 69367000 69367037 -83170222 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1114 1139 324 100 72 chr5 69367093 69367935 -83169324 + Lx8 LINE L1 6298 7162 -311 5 1114 287 25 0 24 chr5 69368247 69368288 -83168971 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 5 1114 3211 98 8 11 chr5 69368288 69368764 -83168495 + L1_Mus3 LINE L1 6158 6632 -6 5 1114 4253 74 10 29 chr5 69368790 69369404 -83167855 + L1_Mus3 LINE L1 6029 6630 -8 5 1114 225 0 0 0 chr5 69369570 69369595 -83167664 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 5 1114 390 273 6 46 chr5 69369609 69369774 -83167485 - L1_Mur3 LINE L1 -3034 2843 2697 5 1114 317 283 54 60 chr5 69369854 69370038 -83167221 - L1_Mur3 LINE L1 -3564 2316 2134 5 1114 321 241 0 3 chr5 69370193 69370276 -83166983 - B4 SINE B4 -140 84 3 5 1114 190 365 14 0 chr5 69370735 69370809 -83166450 - MER5A DNA MER1_type -114 75 1 5 1114 200 340 73 21 chr5 69372076 69372172 -83165087 + MIRm SINE MIR 65 165 -111 5 1114 430 390 119 20 chr5 69372186 69372489 -83164770 + LTR16E2 LTR ERVL 11 343 -225 5 1114 28 0 0 0 chr5 69372804 69372832 -83164427 + AT_rich Low_complexity Low_complexity 1 28 0 5 1114 7012 161 73 12 chr5 69373083 69373558 -83163701 - RMER12B LTR ERVK 0 1404 858 5 1114 2876 93 23 14 chr5 69373558 69373985 -83163274 - L1_Mus1 LINE L1 0 6567 6137 5 1114 7012 161 73 12 chr5 69373985 69374832 -83162427 - RMER12B LTR ERVK -547 857 1 5 1114 297 372 67 10 chr5 69376851 69377060 -83160199 - L2 LINE L2 -1017 2402 2182 5 1114 290 193 182 0 chr5 69378977 69379065 -83158194 + MER73 LTR ERVL 12 115 -529 5 1114 2640 76 17 3 chr5 69379732 69380090 -83157169 - L1_Mus2 LINE L1 -1 6565 6203 5 1114 22 0 0 0 chr5 69380193 69380215 -83157044 + AT_rich Low_complexity Low_complexity 1 22 0 5 1114 418 286 64 0 chr5 69380327 69380479 -83156780 + ERVL-B4-int LTR ERVL 2364 2598 -3163 5 1114 2820 58 13 0 chr5 69380741 69381123 -83156136 - RLTR10 LTR ERVK -3 387 1 5 1114 25 0 0 0 chr5 69381953 69381978 -83155281 + AT_rich Low_complexity Low_complexity 1 25 0 5 1114 22 35 0 0 chr5 69382176 69382205 -83155054 + AT_rich Low_complexity Low_complexity 1 29 0 5 1114 343 345 37 28 chr5 69382846 69383061 -83154198 + RMER15 LTR ERVL 342 558 -17 5 1114 23 0 0 0 chr5 69383632 69383655 -83153604 + AT_rich Low_complexity Low_complexity 1 23 0 6 1114 234 0 0 0 chr5 69384544 69384570 -83152689 + (TTATA)n Simple_repeat Simple_repeat 2 27 0 6 1114 224 190 24 37 chr5 69384870 69384952 -83152307 + (TA)n Simple_repeat Simple_repeat 2 82 0 6 1114 353 289 11 53 chr5 69385002 69385097 -83152162 + RSINE1 SINE B4 23 113 -52 6 1114 288 0 0 0 chr5 69385123 69385155 -83152104 + (ATG)n Simple_repeat Simple_repeat 2 33 0 6 1114 354 23 0 0 chr5 69386427 69386470 -83150789 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 6 1114 746 253 74 20 chr5 69387039 69387106 -83150153 + Lx7 LINE L1 5684 5749 -1895 6 1114 310 74 37 0 chr5 69387106 69387160 -83150099 + (TA)n Simple_repeat Simple_repeat 1 56 0 6 1114 746 271 76 31 chr5 69387160 69387486 -83149773 + Lx7 LINE L1 5746 6082 -1614 6 1114 1214 129 5 0 chr5 69387553 69387746 -83149513 + L1_Mus2 LINE L1 6372 6565 -1 6 1114 350 57 19 0 chr5 69387879 69387932 -83149327 + (GA)n Simple_repeat Simple_repeat 2 55 0 6 1114 218 304 0 25 chr5 69388006 69388087 -83149172 + (TATATG)n Simple_repeat Simple_repeat 5 83 0 6 1114 5541 50 0 0 chr5 69388097 69388776 -83148483 - L1Md_T LINE L1 0 6582 5904 6 1114 2794 309 36 44 chr5 69388784 69388815 -83148444 + Lx7 LINE L1 6138 6167 -1529 6 1114 1304 237 118 16 chr5 69388815 69389196 -83148063 - MTC LTR MaLR -1 420 1 6 1114 2794 309 36 44 chr5 69389196 69390346 -83146913 + Lx7 LINE L1 6168 7310 -386 6 1114 274 273 0 0 chr5 69390365 69390442 -83146817 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1114 1582 302 115 2 chr5 69390477 69391123 -83146136 - Lx6 LINE L1 0 7460 6742 6 1114 238 294 30 60 chr5 69391102 69391236 -83146023 + Lx7 LINE L1 7550 7679 -17 6 1114 211 211 0 0 chr5 69391237 69391289 -83145970 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 6 1114 293 389 111 26 chr5 69391528 69391869 -83145390 - L3 LINE CR1 -779 3710 3341 6 1114 483 112 0 0 chr5 69392310 69392390 -83144869 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 1114 213 375 31 20 chr5 69392596 69392694 -83144565 - B1F1 SINE Alu -34 115 17 6 1114 236 283 20 71 chr5 69392784 69392883 -83144376 - Kanga1d DNA Tc2 -515 94 1 6 1114 21 57 0 0 chr5 69393040 69393075 -83144184 + AT_rich Low_complexity Low_complexity 1 35 0 6 1114 28 0 0 0 chr5 69393121 69393149 -83144110 + AT_rich Low_complexity Low_complexity 1 28 0 6 1114 1392 19 0 0 chr5 69394581 69394743 -83142516 - L1_Mm LINE L1 -79 5804 5643 6 1114 4346 28 0 0 chr5 69394743 69395246 -83142013 + L1Md_T LINE L1 6079 6581 -1 6 1114 59 59 0 0 chr5 69395522 69395623 -83141636 + AT_rich Low_complexity Low_complexity 1 101 0 6 1114 214 327 90 36 chr5 69395623 69395734 -83141525 + MIRc SINE MIR 30 146 -122 6 1114 4592 159 26 11 chr5 69396719 69397576 -83139683 - L1_Mur2 LINE L1 -613 5264 4395 6 1114 1176 151 19 0 chr5 69397576 69397781 -83139478 + Lx4B LINE L1 5668 5876 -1182 6 1114 1978 236 48 22 chr5 69397773 69398233 -83139026 + Lx5 LINE L1 6469 6940 -110 6 1114 3227 167 25 38 chr5 69398241 69398875 -83138384 - Lx3C LINE L1 -2 6974 6349 6 1114 1049 119 82 5 chr5 69398890 69399084 -83138175 - Lx2 LINE L1 0 6997 6789 6 1114 320 214 43 43 chr5 69399085 69399178 -83138081 - Lx3C LINE L1 -639 6337 6245 6 1114 278 264 90 9 chr5 69399167 69399278 -83137981 + Lx5 LINE L1 6927 7046 -4 6 1114 262 285 63 94 chr5 69399790 69399949 -83137310 + MamGypLTR2b LTR Gypsy 716 869 -53 6 1114 429 36 0 0 chr5 69400936 69400991 -83136268 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1114 571 311 31 42 chr5 69400999 69401471 -83135788 - Lx9 LINE L1 -183 7461 6961 6 1114 823 275 8 22 chr5 69401511 69401779 -83135480 - L1_Rod LINE L1 0 5847 5584 6 1114 554 293 35 35 chr5 69402057 69402255 -83135004 + B3A SINE B2 1 198 0 6 1114 434 330 122 5 chr5 69402279 69402483 -83134776 + MLT1B LTR MaLR 96 323 -67 6 1114 236 222 0 0 chr5 69402671 69402716 -83134543 + MLT1B LTR MaLR 378 422 -45 6 1114 610 240 5 103 chr5 69402965 69403169 -83134090 + ORR1C2 LTR MaLR 2 185 -199 6 1114 446 114 25 42 chr5 69403175 69403294 -83133965 + CT-rich Low_complexity Low_complexity 4 120 0 6 1114 952 209 10 15 chr5 69403298 69403502 -83133757 + ORR1C2 LTR MaLR 174 376 -8 6 1114 448 368 44 68 chr5 69403568 69403933 -83133326 - ORR1E LTR MaLR -3 356 1 6 1114 239 185 0 18 chr5 69405476 69405531 -83131728 + CT-rich Low_complexity Low_complexity 1 54 0 6 1114 250 250 13 26 chr5 69406155 69406233 -83131026 - Lx8 LINE L1 0 7473 7397 6 1114 746 323 24 60 chr5 69406250 69406718 -83130541 + L1_Rod LINE L1 5387 5837 -10 6 1114 989 140 6 0 chr5 69407243 69407421 -83129838 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 6 1114 696 286 82 27 chr5 69407520 69407739 -83129520 + MTE2b LTR MaLR 35 265 -114 6 1114 286 200 0 0 chr5 69407932 69407987 -83129272 - B3A SINE B2 -142 56 2 6 1114 645 350 80 18 chr5 69408034 69408360 -83128899 + MTE-int LTR MaLR 5 350 -1230 6 1114 610 255 239 23 chr5 69408441 69408750 -83128509 + MTE2a LTR MaLR 1 376 -3 6 1114 348 167 0 0 chr5 69409728 69409800 -83127459 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 6 1114 3087 128 29 4 chr5 69409839 69410324 -83126935 + L1_Mus4 LINE L1 6133 6629 -7 6 1114 451 356 131 11 chr5 69410372 69410724 -83126535 - Lx8 LINE L1 -240 7233 6840 6 1114 3998 110 20 7 chr5 69411306 69411911 -83125348 + L1_Mus3 LINE L1 6025 6637 -1 6 1114 21 104 0 0 chr5 69411930 69412007 -83125252 + AT_rich Low_complexity Low_complexity 1 77 0 6 1114 242 233 96 40 chr5 69412711 69412836 -83124423 - MLT2C1 LTR ERVL -231 166 35 6 1114 269 308 131 40 chr5 69412857 69413033 -83124226 + MLT1J-int LTR MaLR 520 711 -676 6 1114 239 104 21 0 chr5 69413680 69413728 -83123531 + (CAAAAA)n Simple_repeat Simple_repeat 1 49 0 6 1114 32 43 0 0 chr5 69413970 69414016 -83123243 + AT_rich Low_complexity Low_complexity 1 46 0 6 1114 3980 51 24 0 chr5 69415029 69415536 -83121723 - L1Md_F3 LINE L1 0 6584 6066 6 1114 3479 18 2 0 chr5 69415828 69416223 -83121036 + MTA_Mm LTR MaLR 1 396 0 6 1114 24 53 0 0 chr5 69416528 69416566 -83120693 + AT_rich Low_complexity Low_complexity 1 38 0 6 1114 492 342 32 32 chr5 69416678 69416962 -83120297 - B4A SINE B4 -4 288 5 6 1114 24 32 0 0 chr5 69417054 69417085 -83120174 + AT_rich Low_complexity Low_complexity 1 31 0 6 1114 542 312 33 33 chr5 69417167 69417649 -83119610 - L1MB8 LINE L1 -52 6132 5648 6 1114 1005 33 0 0 chr5 69417719 69417840 -83119419 + (TTC)n Simple_repeat Simple_repeat 3 123 0 6 1114 2991 97 189 2 chr5 69417840 69418336 -83118923 - L1_Mus4 LINE L1 -15 6621 6033 6 1114 24 32 0 0 chr5 69419215 69419246 -83118013 + AT_rich Low_complexity Low_complexity 1 31 0 6 1114 4845 60 19 2 chr5 69419246 69419877 -83117382 - L1_Mus1 LINE L1 -1 6566 5925 6 1114 21 0 0 0 chr5 69420936 69420957 -83116302 + AT_rich Low_complexity Low_complexity 1 21 0 6 1114 420 20 0 0 chr5 69421394 69421443 -83115816 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1114 819 87 134 0 chr5 69421443 69421570 -83115689 - B1_Mus1 SINE Alu -2 146 3 6 1114 246 308 86 9 chr5 69421925 69422030 -83115229 - ORR1E LTR MaLR -215 144 32 6 1114 240 35 0 0 chr5 69422621 69422650 -83114609 + (CAA)n Simple_repeat Simple_repeat 2 30 0 6 1114 288 214 112 56 chr5 69422659 69422748 -83114511 + MT2B LTR ERVL 171 264 -337 6 1114 790 49 0 0 chr5 69422669 69422771 -83114488 + B1_Mus1 SINE Alu 35 136 -12 6 1114 207 0 0 0 chr5 69422773 69422796 -83114463 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1114 1114 285 75 53 chr5 69422830 69422912 -83114347 - Lx6 LINE L1 -54 7406 7324 6 1114 252 77 0 0 chr5 69422912 69422951 -83114308 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 6 1114 1114 300 63 43 chr5 69422951 69423445 -83113814 - Lx6 LINE L1 -137 7323 6454 6 1114 216 67 0 0 chr5 69423445 69423475 -83113784 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1114 391 322 96 11 chr5 69423475 69423532 -83113727 - Lx6 LINE L1 -928 6768 6694 6 1114 283 352 30 11 chr5 69424865 69425024 -83112235 - Lx8 LINE L1 -238 7235 7060 6 1114 23 54 0 0 chr5 69425346 69425383 -83111876 + AT_rich Low_complexity Low_complexity 1 37 0 6 1114 6444 122 36 1 chr5 69425496 69426742 -83110517 + Lx LINE L1 5318 6608 -46 6 1114 195 114 0 0 chr5 69426747 69426782 -83110477 + (TA)n Simple_repeat Simple_repeat 1 35 0 6 1114 435 125 0 0 chr5 69427190 69427262 -83109997 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1114 386 352 22 16 chr5 69427298 69427483 -83109776 - Lx8 LINE L1 -866 6607 6422 6 1114 375 356 154 32 chr5 69427502 69427873 -83109386 - L1MCa LINE L1 -5934 574 159 6 1114 203 243 14 0 chr5 69427938 69428008 -83109251 + (TTG)n Simple_repeat Simple_repeat 2 72 0 6 1114 795 251 4 44 chr5 69430361 69430586 -83106673 - B3 SINE B2 0 216 1 6 1114 231 103 0 0 chr5 69431838 69431877 -83105382 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1114 611 193 90 69 chr5 69432704 69432720 -83104539 - B1_Mus1 SINE Alu 0 148 140 6 1114 360 0 0 0 chr5 69432720 69432760 -83104499 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1114 611 193 90 69 chr5 69432760 69432888 -83104371 - B1_Mus1 SINE Alu -9 139 1 6 1114 23 0 0 0 chr5 69432893 69432916 -83104343 + AT_rich Low_complexity Low_complexity 1 23 0 6 1114 4605 89 86 148 chr5 69432925 69433916 -83103343 + RLTR13B3 LTR ERVK 1 929 0 6 1114 466 305 76 5 chr5 69434358 69434582 -83102677 - LTR48 LTR ERV1 -46 741 502 6 1114 1000 122 7 0 chr5 69434717 69434864 -83102395 + B1_Mus1 SINE Alu 1 148 0 6 1114 725 157 0 7 chr5 69434864 69434999 -83102260 + GA-rich Low_complexity Low_complexity 2 135 0 6 1114 4194 184 43 69 chr5 69435093 69436019 -83101240 - RMER19B LTR ERVK 0 902 1 6 1114 417 308 103 83 chr5 69436058 69436359 -83100900 - MER31B LTR ERV1 -89 377 71 6 1114 972 158 0 42 chr5 69436495 69436687 -83100572 + Lx2 LINE L1 6552 6735 -262 6 1114 2246 78 15 24 chr5 69436687 69437017 -83100242 - IAPLTR2b LTR ERVK 0 327 1 6 1114 6527 54 12 6 chr5 69437019 69437843 -83099416 - IAPEz-int LTR ERVK -2 6479 5651 6 1114 11166 56 30 27 chr5 69437836 69439438 -83097821 - IAPEz-int LTR ERVK -4781 1700 168 6 1114 231 321 0 0 chr5 69439438 69439494 -83097765 - RLTR27 LTR ERVK -34 275 220 6 1114 565 69 16 164 chr5 69439494 69439616 -83097643 - IAPEz-int LTR ERVK -6369 112 9 6 1114 2217 81 15 24 chr5 69439617 69439946 -83097313 - IAPLTR2b LTR ERVK 0 327 2 6 1114 1593 128 8 4 chr5 69439946 69440212 -83097047 + Lx2 LINE L1 6729 6995 -2 6 1114 198 395 0 0 chr5 69441184 69441265 -83095994 + MIR3 SINE MIR 120 200 -8 7 1114 302 247 74 21 chr5 69441454 69441549 -83095710 + MIR SINE MIR 70 169 -93 7 1114 183 42 0 0 chr5 69441565 69441589 -83095670 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 7 1114 324 0 0 0 chr5 69443022 69443058 -83094201 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1114 24 0 0 0 chr5 69445094 69445118 -83092141 + AT_rich Low_complexity Low_complexity 1 24 0 7 1114 492 301 148 6 chr5 69445199 69445537 -83091722 + L1M2 LINE L1 5423 5808 -489 7 1114 346 319 81 0 chr5 69445870 69446030 -83091229 - MER67C LTR ERV1 -443 268 96 7 1114 207 0 0 0 chr5 69447663 69447686 -83089573 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1114 492 18 0 0 chr5 69448339 69448396 -83088863 + (TC)n Simple_repeat Simple_repeat 2 58 0 7 1114 446 46 15 0 chr5 69448396 69448461 -83088798 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 1114 381 307 54 54 chr5 69448469 69448617 -83088642 - B4 SINE B4 -50 242 95 7 1114 2255 210 27 20 chr5 69448620 69449068 -83088191 + RMER6B LTR ERVK 1 451 -10 7 1114 187 256 47 0 chr5 69450293 69450336 -83086923 + MIRm SINE MIR 113 157 -119 7 1114 458 365 58 0 chr5 69450595 69450751 -83086508 - MLT2B1 LTR ERVL -59 508 344 7 1114 2122 116 49 9 chr5 69451088 69451435 -83085824 + Lx LINE L1 6287 6647 -7 7 1114 852 176 171 0 chr5 69451739 69451932 -83085327 + URR1A DNA MER1_type 1 226 0 7 1114 683 284 39 44 chr5 69452593 69452796 -83084463 - B3 SINE B2 -13 203 2 7 1114 294 368 23 23 chr5 69452820 69452948 -83084311 + RSINE1 SINE B4 9 136 -29 7 1114 434 49 16 0 chr5 69452948 69453009 -83084250 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1114 315 0 0 0 chr5 69453020 69453055 -83084204 + (CATA)n Simple_repeat Simple_repeat 2 36 0 7 1114 645 301 43 32 chr5 69453167 69453513 -83083746 + RLTR15 LTR ERVK 1 350 -9 7 1114 29695 78 8 2 chr5 69453552 69457621 -83079638 + L1Md_F2 LINE L1 1493 5585 -298 7 1114 6739 83 45 20 chr5 69457622 69458592 -83078667 + L1Md_F2 LINE L1 5587 6581 -1 7 1114 868 70 0 45 chr5 69458607 69458741 -83078518 + B1_Mur3 SINE Alu 1 128 -21 7 1114 429 36 0 0 chr5 69458744 69458799 -83078460 + (TAAA)n Simple_repeat Simple_repeat 4 58 0 7 1114 318 301 164 61 chr5 69458949 69459211 -83078048 - L1MCa LINE L1 -4886 1622 1334 7 1114 1109 296 109 28 chr5 69459330 69459980 -83077279 - L1MCa LINE L1 -5309 1199 497 7 1114 341 335 81 9 chr5 69460041 69460252 -83077007 - L1MCa LINE L1 -6143 365 140 7 1114 568 328 25 5 chr5 69460825 69461024 -83076235 - B3 SINE B2 -6 210 8 7 1114 209 299 90 22 chr5 69461081 69461170 -83076089 + L2 LINE L2 1981 2075 -1344 7 1114 228 111 0 0 chr5 69461326 69461362 -83075897 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1114 228 86 0 0 chr5 69461363 69461398 -83075861 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1114 416 283 171 58 chr5 69461421 69461714 -83075545 - MLT1A0 LTR MaLR -37 328 3 7 1114 318 297 137 44 chr5 69461886 69462090 -83075169 - L1MC2 LINE L1 -26 6318 6096 7 1114 2363 191 81 38 chr5 69462108 69462972 -83074287 - Lx3_Mus LINE L1 0 7009 6022 7 1114 7322 37 0 0 chr5 69462981 69463853 -83073406 + L1Md_T LINE L1 5711 6582 0 7 1114 2137 176 102 33 chr5 69463872 69464353 -83072906 - RMER5 LTR ERV1 0 534 21 7 1114 1543 43 0 0 chr5 69464590 69464774 -83072485 - B2_Mm1t SINE B2 -8 185 2 7 1114 241 311 45 123 chr5 69464831 69465051 -83072208 - RMER2 LTR ERV1 -27 540 338 7 1114 267 286 67 8 chr5 69465302 69465422 -83071837 - L1MC2 LINE L1 -456 5888 5762 7 1114 830 312 43 13 chr5 69465717 69466022 -83071237 + MLT1A0 LTR MaLR 48 361 -4 7 1114 383 273 60 0 chr5 69466242 69466369 -83070890 - LTR40b LTR ERVL -15 504 348 7 1114 840 219 6 12 chr5 69466430 69466596 -83070663 + B2_Mm2 SINE B2 10 174 -21 7 1114 499 47 16 0 chr5 69466607 69466671 -83070588 - ORR1A3 LTR MaLR -51 275 211 7 1114 30 0 0 0 chr5 69466735 69466765 -83070494 + AT_rich Low_complexity Low_complexity 1 30 0 7 1114 824 300 77 28 chr5 69467538 69467891 -83069368 - ORR1D1 LTR MaLR -4 370 1 7 1115 1037 145 129 10 chr5 69468572 69468774 -83068485 + URR1A DNA MER1_type 1 226 0 7 1115 7029 38 0 2 chr5 69469041 69469893 -83067366 + L1Md_F3 LINE L1 5734 6583 -1 7 1115 1069 58 0 0 chr5 69470610 69470747 -83066512 + B1_Mus2 SINE Alu 11 147 0 7 1115 224 91 0 22 chr5 69470751 69470796 -83066463 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 7 1115 369 0 0 0 chr5 69473447 69473488 -83063771 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1115 564 15 0 0 chr5 69473636 69473701 -83063558 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1115 1151 280 63 112 chr5 69474675 69475246 -83062013 - RMER15 LTR ERVL -5 570 28 7 1115 22 35 0 0 chr5 69475540 69475569 -83061690 + AT_rich Low_complexity Low_complexity 1 29 0 7 1115 186 103 0 0 chr5 69475760 69475789 -83061470 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 7 1115 3269 142 19 2 chr5 69475794 69476336 -83060923 - Lx3_Mus LINE L1 -49 6960 6410 7 1115 537 16 0 0 chr5 69476352 69476414 -83060845 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 7 1115 346 274 137 34 chr5 69476533 69476614 -83060645 - L1M1 LINE L1 -559 5741 5652 7 1115 396 0 0 0 chr5 69476614 69476658 -83060601 + (TA)n Simple_repeat Simple_repeat 1 44 0 7 1115 346 274 137 34 chr5 69476658 69476810 -83060449 - L1M1 LINE L1 -649 5651 5484 7 1115 301 296 109 23 chr5 69477528 69477656 -83059603 + HAL1-3A_ME LINE L1 2300 2438 -420 7 1115 5561 97 24 4 chr5 69477981 69478771 -83058488 - L1_Mus4 LINE L1 0 6636 5831 7 1115 22 35 0 0 chr5 69479822 69479851 -83057408 + AT_rich Low_complexity Low_complexity 1 29 0 7 1115 243 321 14 64 chr5 69480148 69480288 -83056971 + LTR90B LTR LTR 660 792 -4 7 1115 185 65 0 31 chr5 69480504 69480536 -83056723 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 7 1115 449 354 80 9 chr5 69481445 69481670 -83055589 - LTR83 LTR ERVL -536 244 4 7 1115 671 304 44 152 chr5 69481860 69482268 -83054991 + MTE2a LTR MaLR 9 372 -7 7 1115 640 163 35 11 chr5 69482950 69482986 -83054273 + polypyrimidine Low_complexity Low_complexity 145 180 0 7 1115 1452 44 0 0 chr5 69482986 69483166 -83054093 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1115 640 163 35 11 chr5 69483166 69483303 -83053956 + CT-rich Low_complexity Low_complexity 3 144 0 7 1115 256 61 0 0 chr5 69483303 69483336 -83053923 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 7 1115 276 380 0 0 chr5 69483956 69484056 -83053203 + B1F1 SINE Alu 6 105 -44 7 1115 393 22 0 0 chr5 69484067 69484113 -83053146 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1115 180 0 0 0 chr5 69484419 69484439 -83052820 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1115 369 0 0 0 chr5 69484951 69484992 -83052267 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1115 318 26 0 0 chr5 69485069 69485108 -83052151 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1115 4588 175 40 1 chr5 69486098 69486898 -83050361 + Lx4A LINE L1 6223 7053 -5 7 1115 238 326 21 21 chr5 69487046 69487140 -83050119 - Tigger7 DNA MER2_type -8 2483 2390 7 1115 575 27 14 0 chr5 69487212 69487285 -83049974 + (CA)n Simple_repeat Simple_repeat 2 75 0 7 1115 21 36 0 0 chr5 69487503 69487531 -83049728 + AT_rich Low_complexity Low_complexity 1 28 0 7 1115 594 245 93 53 chr5 69488225 69488376 -83048883 - RSINE1 SINE B4 0 165 9 7 1115 1327 154 9 0 chr5 69488942 69489156 -83048103 - Lx4A LINE L1 -652 6406 6191 7 1115 875 131 15 0 chr5 69489170 69489307 -83047952 + Lx4B LINE L1 6595 6733 -325 7 1115 688 145 108 38 chr5 69489306 69489457 -83047802 + Lx4B LINE L1 6884 7047 -11 7 1115 615 51 0 0 chr5 69489457 69489536 -83047723 + (CATA)n Simple_repeat Simple_repeat 2 80 0 7 1115 2123 242 50 44 chr5 69490037 69490654 -83046605 + Lx7 LINE L1 6807 7427 -269 7 1115 572 255 0 20 chr5 69490692 69490840 -83046419 - B1_Mm SINE Alu -2 145 1 7 1115 285 266 16 114 chr5 69490735 69490858 -83046401 - MT2B LTR ERVL -344 257 147 7 1115 235 258 45 0 chr5 69490859 69490948 -83046311 + Lx7 LINE L1 7585 7677 -19 7 1115 7660 98 6 2 chr5 69491017 69492374 -83044885 + L1_Mus3 LINE L1 5275 6638 0 7 1115 228 259 0 18 chr5 69492875 69492930 -83044329 + GA-rich Low_complexity Low_complexity 3 56 0 7 1115 2026 219 197 50 chr5 69492976 69494381 -83042878 + Lx5 LINE L1 4853 6711 -749 7 1115 4183 197 216 43 chr5 69494406 69495069 -83042190 - RLTR22_Mur LTR ERVK -145 1703 959 7 1115 5013 87 1 6 chr5 69495069 69495748 -83041511 - L1_Mus1 LINE L1 0 6567 5892 7 1115 4183 197 216 43 chr5 69495748 69496535 -83040724 - RLTR22_Mur LTR ERVK -890 958 2 7 1115 1836 282 57 15 chr5 69496537 69497168 -83040091 + Lx5 LINE L1 6455 7042 -8 7 1115 315 322 51 0 chr5 69497424 69497542 -83039717 + MER97c DNA MER1_type? 86 209 -881 7 1115 425 180 112 0 chr5 69497626 69497715 -83039544 + RCHARR1 DNA MER1_type 414 512 -462 7 1115 489 97 0 0 chr5 69497718 69497790 -83039469 + (CA)n Simple_repeat Simple_repeat 2 73 0 7 1115 2293 77 19 0 chr5 69498713 69499023 -83038236 - L1_Mus1 LINE L1 -6 6561 6246 7 1115 346 233 25 6 chr5 69499663 69499757 -83037502 - B4A SINE B4 -63 102 2 7 1115 221 135 0 19 chr5 69500985 69501038 -83036221 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1 1115 6398 137 7 5 chr5 69502065 69503108 -83034151 + L1_Mur2 LINE L1 4080 5124 -753 2 1115 603 208 37 55 chr5 69503928 69504091 -83033168 + Lx9 LINE L1 6925 7084 -560 3 1115 28 29 0 0 chr5 69504819 69504854 -83032405 + AT_rich Low_complexity Low_complexity 1 35 0 4 1115 30 59 0 0 chr5 69506034 69506085 -83031174 + AT_rich Low_complexity Low_complexity 1 51 0 5 1115 2059 299 86 62 chr5 69506136 69506267 -83030992 + Lx9 LINE L1 6450 6577 -1067 6 1115 7393 49 1 3 chr5 69506267 69507189 -83030070 + L1Md_F2 LINE L1 5663 6582 0 7 1115 2059 299 86 62 chr5 69507189 69508042 -83029217 + Lx9 LINE L1 6578 7457 -187 6 1115 849 45 0 0 chr5 69508044 69508154 -83029105 + (TG)n Simple_repeat Simple_repeat 1 110 0 8 1115 513 0 0 0 chr5 69508154 69508210 -83029049 + (GA)n Simple_repeat Simple_repeat 1 57 0 9 1115 205 152 0 0 chr5 69508233 69508266 -83028993 + GA-rich Low_complexity Low_complexity 4 36 0 1 1115 41200 9 0 2 chr5 69508458 69515848 -83021411 - L1Md_A LINE L1 0 6582 1 1 1115 272 411 64 37 chr5 69516223 69516410 -83020849 - ORR1E LTR MaLR -167 192 1 1 1115 334 179 0 0 chr5 69516704 69516771 -83020488 - Lx7 LINE L1 0 7696 7630 1 1115 303 275 0 28 chr5 69516828 69516899 -83020360 + B1_Mur2 SINE Alu 80 148 -1 1 1115 202 197 60 15 chr5 69517110 69517177 -83020082 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1115 234 0 0 0 chr5 69517197 69517223 -83020036 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1115 199 217 98 16 chr5 69518070 69518131 -83019128 + MIRb SINE MIR 132 197 -71 1 1115 237 283 0 0 chr5 69518410 69518470 -83018789 + CT-rich Low_complexity Low_complexity 5 64 0 1 1115 517 262 87 53 chr5 69518470 69518736 -83018523 - B4 SINE B4 -14 278 4 1 1115 251 349 70 0 chr5 69518781 69518910 -83018349 + B1F SINE Alu 10 147 -2 1 1115 303 293 0 0 chr5 69519569 69519644 -83017615 - BC1_Mm scRNA scRNA -60 92 18 2 1115 246 277 131 0 chr5 69519647 69519784 -83017475 + L1MA4 LINE L1 5777 5931 -369 2 1115 208 135 0 0 chr5 69519996 69520033 -83017226 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1115 553 309 10 67 chr5 69521148 69521356 -83015903 - B3A SINE B2 0 198 3 2 1115 832 173 0 11 chr5 69522445 69522626 -83014633 + CT-rich Low_complexity Low_complexity 2 180 0 2 1115 23 33 0 0 chr5 69522810 69522840 -83014419 + AT_rich Low_complexity Low_complexity 1 30 0 2 1115 28 29 0 0 chr5 69524674 69524709 -83012550 + AT_rich Low_complexity Low_complexity 1 35 0 2 1115 1187 245 49 63 chr5 69525436 69525802 -83011457 + MTEa LTR MaLR 12 372 -7 2 1115 460 329 64 87 chr5 69526169 69526435 -83010824 - B4A SINE B4 -25 267 8 2 1115 1108 111 0 11 chr5 69526557 69526739 -83010520 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1115 239 276 117 21 chr5 69526778 69526883 -83010376 + MLT1A0 LTR MaLR 9 123 -285 3 1115 185 261 30 30 chr5 69526974 69527041 -83010218 + MIRm SINE MIR 162 228 -48 3 1115 1036 163 59 30 chr5 69527324 69527544 -83009715 - ORR1C1 LTR MaLR 0 421 200 3 1115 259 324 54 0 chr5 69527552 69527663 -83009596 + MER45B DNA Tip100 906 1022 -18 3 1115 312 246 14 82 chr5 69527942 69528150 -83009109 + Lx9 LINE L1 7451 7644 0 3 1115 21 0 0 0 chr5 69528811 69528832 -83008427 + AT_rich Low_complexity Low_complexity 1 21 0 3 1115 634 248 22 10 chr5 69528902 69529081 -83008178 - B3 SINE B2 -10 185 1 3 1115 644 305 111 31 chr5 69531454 69531806 -83005453 - MTD LTR MaLR -25 394 15 3 1115 25 0 0 0 chr5 69533211 69533236 -83004023 + AT_rich Low_complexity Low_complexity 1 25 0 3 1115 3907 53 2 18 chr5 69533948 69534450 -83002809 - L1Md_F2 LINE L1 -12 6570 6077 3 1115 749 110 0 8 chr5 69534451 69534570 -83002689 + (GAAA)n Simple_repeat Simple_repeat 3 120 0 4 1115 551 311 7 0 chr5 69534635 69534783 -83002476 - B1_Mur1 SINE Alu 0 149 1 4 1115 213 385 42 8 chr5 69534678 69534796 -83002463 - B4A SINE B4 -98 194 73 4 1115 221 0 35 0 chr5 69535447 69535476 -83001783 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1115 225 292 46 0 chr5 69535562 69535627 -83001632 + MTEb LTR MaLR 294 361 -18 4 1115 243 88 0 0 chr5 69536026 69536060 -83001199 + (A)n Simple_repeat Simple_repeat 1 34 0 4 1115 690 233 200 0 chr5 69536200 69536380 -83000879 + B3 SINE B2 1 216 0 4 1115 226 183 38 112 chr5 69536862 69536942 -83000317 + Arthur1 DNA Tip100 1666 1739 -2208 4 1115 28 61 0 0 chr5 69537607 69537656 -82999603 + AT_rich Low_complexity Low_complexity 1 49 0 4 1115 22 0 0 0 chr5 69537811 69537833 -82999426 + AT_rich Low_complexity Low_complexity 1 22 0 4 1115 3045 128 53 16 chr5 69537958 69538451 -82998808 - Lx2A1 LINE L1 -28 6980 6470 5 1115 421 259 63 74 chr5 69538706 69538881 -82998378 - RMER13B LTR ERVK -735 173 1 5 1115 778 315 64 43 chr5 69539648 69539976 -82997283 + ORR1D2 LTR MaLR 1 335 -35 5 1115 287 248 83 37 chr5 69539980 69540089 -82997170 + MT2A LTR ERVL 1 114 -419 5 1115 4452 142 92 4 chr5 69540144 69540915 -82996344 + Lx2B LINE L1 6156 6994 -6 5 1115 1169 228 146 24 chr5 69540935 69541303 -82995956 + MT2A LTR ERVL 121 533 0 5 1115 545 284 64 93 chr5 69541368 69541819 -82995440 + L1MA5 LINE L1 5861 6298 -2 5 1115 2312 11 0 0 chr5 69542348 69542611 -82994648 + L1Md_A LINE L1 6320 6582 0 5 1115 549 80 0 0 chr5 69542833 69542908 -82994351 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1115 745 348 11 4 chr5 69543104 69543375 -82993884 - B4A SINE B4 -10 282 10 5 1115 296 346 9 18 chr5 69544062 69544171 -82993088 + MER58A DNA MER1_type 49 156 -68 5 1115 23 0 0 0 chr5 69544329 69544352 -82992907 + AT_rich Low_complexity Low_complexity 1 23 0 6 1115 21 36 0 0 chr5 69544715 69544743 -82992516 + AT_rich Low_complexity Low_complexity 1 28 0 6 1115 271 0 51 0 chr5 69544812 69544851 -82992408 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 6 1115 655 320 60 16 chr5 69545351 69545602 -82991657 - MTD LTR MaLR -116 303 42 6 1115 490 293 61 25 chr5 69545701 69545897 -82991362 - MLT1B LTR MaLR -173 217 15 6 1115 189 0 0 0 chr5 69545922 69545943 -82991316 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1115 198 387 66 25 chr5 69546296 69546537 -82990722 + MIR SINE MIR 12 262 0 6 1115 817 286 15 0 chr5 69546995 69547198 -82990061 + B3 SINE B2 11 216 0 6 1115 3154 89 4 30 chr5 69548350 69548823 -82988436 + Lx LINE L1 6188 6648 -6 6 1115 27 81 0 0 chr5 69549087 69549149 -82988110 + AT_rich Low_complexity Low_complexity 1 62 0 6 1115 234 81 0 0 chr5 69549370 69549407 -82987852 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1115 234 0 0 0 chr5 69549583 69549609 -82987650 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1115 284 291 40 131 chr5 69549730 69549829 -82987430 - PB1D10 SINE Alu -33 116 27 7 1115 450 0 0 0 chr5 69550633 69550683 -82986576 + (TA)n Simple_repeat Simple_repeat 1 50 0 7 1115 271 276 41 88 chr5 69551023 69551170 -82986089 - MIRb SINE MIR 0 268 129 7 1115 395 315 201 37 chr5 69551991 69552235 -82985024 - Tigger7 DNA MER2_type -2195 296 13 7 1115 332 263 178 23 chr5 69552260 69552564 -82984695 + RMER17A2 LTR ERVK 171 521 -385 7 1115 564 120 0 99 chr5 69553788 69553899 -82983360 + ORR1A4 LTR MaLR 1 100 -229 7 1115 931 82 8 0 chr5 69553893 69554015 -82983244 + ORR1A4 LTR MaLR 207 329 0 7 1115 2372 301 35 42 chr5 69554123 69554952 -82982307 - RMER1C Other Other -138 1204 382 7 1115 621 236 17 17 chr5 69554956 69555120 -82982139 - RMER1B Other Other -710 356 224 7 1115 2315 168 29 17 chr5 69555120 69555531 -82981728 - MTC LTR MaLR -5 416 1 8 1115 699 12 0 0 chr5 69556465 69556545 -82980714 + (TCTCCC)n Simple_repeat Simple_repeat 3 82 0 8 1115 383 302 9 19 chr5 69556547 69556655 -82980604 - MTD LTR MaLR -201 218 112 8 1115 7439 106 20 2 chr5 69556657 69557751 -82979508 + Lx3_Mus LINE L1 5885 6998 -11 8 1115 238 356 0 10 chr5 69557771 69557873 -82979386 - MTD LTR MaLR -299 120 20 8 1115 22 0 0 0 chr5 69558219 69558241 -82979018 + AT_rich Low_complexity Low_complexity 1 22 0 8 1115 223 286 32 42 chr5 69559082 69559177 -82978082 + MIRm SINE MIR 45 138 -138 8 1115 275 181 35 190 chr5 69559181 69559297 -82977962 + RMER20B LTR ERVK 21 118 -509 8 1115 344 270 157 21 chr5 69559485 69559625 -82977634 + RMER20B LTR ERVK 181 339 -288 8 1115 483 307 88 0 chr5 69560020 69560157 -82977102 - B1_Mur1 SINE Alu 0 149 1 8 1115 467 321 24 36 chr5 69562029 69562194 -82975065 - RSINE1 SINE B4 0 165 3 8 1115 22 0 0 0 chr5 69562604 69562626 -82974633 + AT_rich Low_complexity Low_complexity 1 22 0 8 1115 373 89 15 15 chr5 69562752 69562820 -82974439 + (TG)n Simple_repeat Simple_repeat 1 68 0 9 1115 373 403 21 7 chr5 69562826 69562971 -82974288 - RSINE1 SINE B4 -16 149 3 9 1115 23 33 0 0 chr5 69563332 69563362 -82973897 + AT_rich Low_complexity Low_complexity 1 30 0 9 1115 1100 108 0 0 chr5 69565287 69565435 -82971824 + B1_Mus1 SINE Alu 1 148 0 9 1115 621 40 0 0 chr5 69565559 69565635 -82971624 + (TC)n Simple_repeat Simple_repeat 1 76 0 9 1115 477 232 262 21 chr5 69565641 69565923 -82971336 - L1MB1 LINE L1 -40 6149 5800 9 1115 232 307 48 19 chr5 69566047 69566150 -82971109 + L1M3 LINE L1 5580 5685 -486 9 1115 181 284 29 29 chr5 69566327 69566396 -82970863 - L4 LINE RTE -887 1142 1074 9 1115 2172 171 14 10 chr5 69566443 69566834 -82970425 - ORR1B1 LTR MaLR 0 419 1 9 1115 2111 132 0 58 chr5 69567491 69567836 -82969423 + ORR1A3 LTR MaLR 1 325 -1 9 1115 235 259 159 19 chr5 69567907 69568012 -82969247 - PB1D9 SINE Alu 0 120 10 1 1115 277 281 153 18 chr5 69568509 69568679 -82968580 - MIR SINE MIR -50 212 20 1 1115 1707 183 0 43 chr5 69568688 69569064 -82968195 - Lx LINE L1 -1 6653 6294 1 1115 286 194 0 101 chr5 69569231 69569300 -82967959 - ID4 SINE ID 0 83 22 1 1115 4267 220 24 15 chr5 69569938 69570892 -82966367 - Lx2B LINE L1 -13 6987 6025 1 1115 4060 158 36 7 chr5 69570891 69571738 -82965521 + Lx2B LINE L1 5152 6031 -969 1 1115 227 432 12 0 chr5 69571753 69571834 -82965425 + B3A SINE B2 80 161 -37 1 1115 23 33 0 0 chr5 69571857 69571887 -82965372 + AT_rich Low_complexity Low_complexity 1 30 0 1 1115 1188 94 67 0 chr5 69572737 69572917 -82964342 - B2_Mm2 SINE B2 -2 193 2 1 1115 592 169 78 121 chr5 69573937 69573959 -82963300 + B3 SINE B2 1 22 -194 1 1115 5474 86 3 0 chr5 69573959 69574694 -82962565 + L1_Mus2 LINE L1 5830 6566 0 1 1115 871 133 30 22 chr5 69574694 69574848 -82962411 + B2_Mm2 SINE B2 23 162 -33 1 1115 613 318 138 15 chr5 69575973 69576241 -82961018 + RMER15 LTR ERVL 272 572 -3 1 1115 253 279 28 46 chr5 69576256 69576365 -82960894 + L1M5 LINE L1 5506 5612 -561 1 1115 307 315 35 53 chr5 69576891 69577005 -82960254 + PB1D10 SINE Alu 6 117 0 1 1115 21 57 0 0 chr5 69577284 69577319 -82959940 + AT_rich Low_complexity Low_complexity 1 35 0 1 1115 1894 55 4 0 chr5 69578703 69578940 -82958319 - L1_Mus1 LINE L1 -2 6565 6328 1 1115 745 320 52 25 chr5 69579247 69579793 -82957466 + L1MB8 LINE L1 5287 5849 -329 1 1115 227 268 14 14 chr5 69579993 69580065 -82957194 + GA-rich Low_complexity Low_complexity 3 74 0 1 1115 6285 95 36 2 chr5 69580065 69580971 -82956288 + L1_Mus4 LINE L1 5694 6630 -6 1 1115 23 0 0 0 chr5 69581063 69581086 -82956173 + AT_rich Low_complexity Low_complexity 1 23 0 1 1115 465 122 0 0 chr5 69581115 69581197 -82956062 + L1_Mus3 LINE L1 6554 6635 -3 1 1115 552 193 0 40 chr5 69581210 69581361 -82955898 + GA-rich Low_complexity Low_complexity 1 145 0 1 1115 224 379 39 33 chr5 69581508 69581688 -82955571 + MIR SINE MIR 1 181 -81 1 1115 1292 236 60 34 chr5 69581693 69582109 -82955150 + Lx9 LINE L1 7184 7610 -34 1 1115 870 241 19 0 chr5 69582367 69582574 -82954685 - B3 SINE B2 -1 215 5 1 1115 443 280 94 103 chr5 69582790 69583013 -82954246 - RMER21B LTR ERV1 -275 567 347 1 1115 2695 112 0 8 chr5 69583097 69583476 -82953783 - MTA_Mm LTR MaLR 0 396 21 1 1115 507 17 0 0 chr5 69583476 69583536 -82953723 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1115 3552 257 58 20 chr5 69584418 69585033 -82952226 + Lx9 LINE L1 6461 7075 -569 1 1115 2223 191 85 20 chr5 69585033 69585529 -82951730 + RLTR12B LTR ERVK 1 528 0 1 1115 3552 257 58 20 chr5 69585529 69585881 -82951378 + Lx9 LINE L1 7076 7465 -179 1 1115 394 226 17 17 chr5 69585894 69586011 -82951248 + Lx9 LINE L1 7520 7636 -8 1 1115 228 263 79 0 chr5 69586249 69586325 -82950934 - L1M2 LINE L1 -438 5874 5793 1 1115 310 330 20 0 chr5 69586714 69586814 -82950445 - PB1D10 SINE Alu -7 110 9 1 1115 193 98 49 0 chr5 69587011 69587052 -82950207 + (TTCTC)n Simple_repeat Simple_repeat 3 45 0 1 1115 791 285 18 80 chr5 69587206 69587431 -82949828 - B3 SINE B2 -5 211 1 1 1115 468 117 0 0 chr5 69587690 69587767 -82949492 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1115 1104 89 0 0 chr5 69587899 69588079 -82949180 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1115 306 0 0 0 chr5 69588079 69588112 -82949147 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1115 3559 194 73 22 chr5 69592033 69592128 -82945131 + Lx5 LINE L1 6248 6342 -708 1 1115 2565 98 8 3 chr5 69592128 69592498 -82944761 + L1_Mus3 LINE L1 6265 6636 -2 1 1115 3559 194 73 22 chr5 69592498 69593165 -82944094 + Lx5 LINE L1 6343 7049 -1 1 1115 25 51 0 0 chr5 69593166 69593205 -82944054 + AT_rich Low_complexity Low_complexity 1 39 0 1 1115 558 0 0 0 chr5 69593855 69593917 -82943342 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1115 21 36 0 0 chr5 69594054 69594082 -82943177 + AT_rich Low_complexity Low_complexity 1 28 0 1 1115 1254 95 0 0 chr5 69594159 69594338 -82942921 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 1 1115 446 0 19 0 chr5 69594349 69594403 -82942856 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1115 2617 274 96 57 chr5 69594531 69595719 -82941540 + Lx9 LINE L1 6402 7635 -9 1 1115 186 43 0 0 chr5 69595950 69595973 -82941286 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1115 848 119 88 15 chr5 69595973 69596100 -82941159 - B1_Mus1 SINE Alu -9 139 1 1 1115 382 294 144 32 chr5 69596364 69596733 -82940526 + MER97a DNA MER1_type? 455 864 -30 1 1115 652 269 12 60 chr5 69596736 69596902 -82940357 + RSINE1 SINE B4 6 163 -2 1 1115 507 134 0 0 chr5 69596913 69596995 -82940264 + (TAAA)n Simple_repeat Simple_repeat 4 85 0 1 1115 193 287 38 45 chr5 69597078 69597184 -82940075 + MIR SINE MIR 121 221 -47 1 1115 345 24 0 0 chr5 69597336 69597378 -82939881 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1115 842 269 10 41 chr5 69597786 69597980 -82939279 - B3 SINE B2 -28 188 1 1 1115 222 171 0 0 chr5 69598179 69598220 -82939039 + (CGTG)n Simple_repeat Simple_repeat 2 42 0 1 139 2061 266 70 76 chr5 69598887 69599784 -82937475 - RMER17B LTR ERVK -4 904 1 1 1116 378 351 0 44 chr5 69600189 69600326 -82936933 - MLT1E3 LTR MaLR -8 616 486 1 1116 248 192 0 55 chr5 69602761 69602816 -82934443 - Charlie6 DNA MER1_type -1901 1599 1548 1 1116 184 344 28 84 chr5 69602904 69603082 -82934177 + L2 LINE L2 1758 1925 -1494 1 1116 2698 175 37 22 chr5 69603082 69603142 -82934117 - RMER20A LTR ERVK 0 516 456 1 1116 225 0 0 0 chr5 69603142 69603167 -82934092 + (ATG)n Simple_repeat Simple_repeat 1 25 0 1 1116 2698 175 37 22 chr5 69603167 69603614 -82933645 - RMER20A LTR ERVK -61 455 1 1 1116 278 327 112 12 chr5 69603617 69603778 -82933481 + L2 LINE L2 1926 2102 -1317 1 1116 196 162 27 0 chr5 69604457 69604494 -82932765 + L2 LINE L2 2515 2552 -867 1 1116 250 247 50 127 chr5 69604500 69604651 -82932608 + B2_Mm2 SINE B2 29 161 -34 1 1116 612 62 0 0 chr5 69604651 69604732 -82932527 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1116 250 247 50 127 chr5 69604732 69604761 -82932498 + B2_Mm2 SINE B2 162 195 0 1 1116 1018 70 35 21 chr5 69604761 69604906 -82932353 + B1_Mus2 SINE Alu 1 147 0 1 1116 282 156 0 0 chr5 69604909 69604973 -82932286 + A-rich Low_complexity Low_complexity 1 64 0 1 1116 190 301 68 0 chr5 69606391 69606464 -82930795 - L3 LINE CR1 -317 4172 4095 1 1116 929 198 148 74 chr5 69606753 69606901 -82930358 - MTD LTR MaLR -55 364 194 1 1116 183 42 0 0 chr5 69606901 69606925 -82930334 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1116 1058 82 0 0 chr5 69606925 69607060 -82930199 - B1_Mus2 SINE Alu -10 137 3 1 1116 929 198 148 74 chr5 69607060 69607194 -82930065 - MTD LTR MaLR -226 193 61 1 1116 737 220 7 7 chr5 69607313 69607455 -82929804 - B1_Mur3 SINE Alu -5 144 3 1 1116 22 0 0 0 chr5 69607742 69607764 -82929495 + AT_rich Low_complexity Low_complexity 1 22 0 1 1116 1038 121 13 0 chr5 69607849 69608006 -82929253 - B2_Mm1t SINE B2 0 193 35 1 1116 883 292 114 56 chr5 69608134 69608547 -82928712 + Lx8 LINE L1 6300 6736 -737 1 1116 26 0 0 0 chr5 69609273 69609299 -82927960 + AT_rich Low_complexity Low_complexity 1 26 0 1 1116 26 0 0 0 chr5 69609592 69609618 -82927641 + AT_rich Low_complexity Low_complexity 1 26 0 1 1116 553 321 50 15 chr5 69610327 69610526 -82926733 + ID_B1 SINE B4 6 211 -13 1 1116 495 0 0 0 chr5 69610530 69610585 -82926674 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1116 181 273 0 0 chr5 69611322 69611366 -82925893 - MIRc SINE MIR -102 166 123 1 1116 243 366 80 68 chr5 69611605 69611930 -82925329 - MLT1J LTR MaLR -46 466 138 1 1116 678 122 0 0 chr5 69612054 69612161 -82925098 + (GA)n Simple_repeat Simple_repeat 2 108 0 1 1116 27 29 0 0 chr5 69613131 69613165 -82924094 + AT_rich Low_complexity Low_complexity 1 34 0 1 1116 571 250 0 0 chr5 69613259 69613367 -82923892 + Lx5 LINE L1 6728 6835 -215 1 1116 395 200 34 12 chr5 69613358 69613466 -82923793 + L1_Mur3 LINE L1 4481 4590 -1293 1 1116 25 0 0 0 chr5 69613924 69613949 -82923310 + AT_rich Low_complexity Low_complexity 1 25 0 1 1116 776 242 60 93 chr5 69614415 69614684 -82922575 - RMER21B LTR ERV1 -279 563 304 1 1116 21 36 0 0 chr5 69614748 69614776 -82922483 + AT_rich Low_complexity Low_complexity 1 28 0 1 1116 1982 177 92 3 chr5 69615077 69615456 -82921803 + MTC LTR MaLR 1 413 -8 1 1116 567 230 105 7 chr5 69615595 69615748 -82921511 - Lx8 LINE L1 -249 7224 7057 1 1116 218 283 16 16 chr5 69615998 69616059 -82921200 - ID4_ SINE ID -19 64 4 1 1116 24 0 0 0 chr5 69616282 69616306 -82920953 + AT_rich Low_complexity Low_complexity 1 24 0 1 1116 32 43 0 0 chr5 69616524 69616570 -82920689 + AT_rich Low_complexity Low_complexity 1 46 0 1 1116 201 143 0 0 chr5 69616625 69616660 -82920599 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 1116 389 365 7 14 chr5 69617084 69617231 -82920028 + MER58A DNA MER1_type 79 224 0 1 1116 902 177 125 58 chr5 69617267 69617507 -82919752 - Lx4A LINE L1 -3 7055 6800 1 1116 1145 180 28 5 chr5 69617503 69617715 -82919544 + Lx4A LINE L1 6537 6753 -305 1 1116 1380 29 0 39 chr5 69619368 69619549 -82917710 + L1Md_F2 LINE L1 6392 6565 -17 1 1116 239 265 22 14 chr5 69619793 69619931 -82917328 + (TA)n Simple_repeat Simple_repeat 2 140 0 1 1116 455 0 18 0 chr5 69619946 69620001 -82917258 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1116 805 62 22 58 chr5 69621208 69621345 -82915914 + L1Md_F3 LINE L1 6452 6583 -1 1 1116 381 22 0 0 chr5 69621406 69621452 -82915807 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1116 1142 95 0 0 chr5 69621577 69621725 -82915534 + B1_Mus1 SINE Alu 1 148 0 1 1116 1830 187 11 11 chr5 69621753 69622120 -82915139 - Lx2 LINE L1 -370 5507 5141 1 1116 8052 171 25 8 chr5 69622121 69623594 -82913665 + Lx2 LINE L1 5504 6997 0 1 1116 506 349 114 26 chr5 69623655 69624040 -82913219 - MamRep605 Unknown Unknown -365 511 93 1 1116 339 113 0 0 chr5 69624442 69624495 -82912764 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1116 714 306 51 22 chr5 69626433 69626707 -82910552 + Lx8 LINE L1 6244 6525 -948 2 1116 1150 76 0 0 chr5 69626988 69627133 -82910126 - B1_Mus1 SINE Alu -2 146 2 2 1116 25 75 0 0 chr5 69627161 69627214 -82910045 + AT_rich Low_complexity Low_complexity 1 53 0 2 1116 4226 98 82 8 chr5 69627267 69627903 -82909356 - L1_Mus4 LINE L1 -6 6630 5948 2 1116 303 93 0 0 chr5 69628426 69628469 -82908790 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1116 525 121 0 0 chr5 69628470 69628553 -82908706 + (TA)n Simple_repeat Simple_repeat 2 84 0 2 1116 293 337 62 67 chr5 69629306 69629484 -82907775 + MIRb SINE MIR 38 214 -54 2 1116 1136 81 6 0 chr5 69629696 69629857 -82907402 + (GAAA)n Simple_repeat Simple_repeat 3 164 0 2 1116 21 36 0 0 chr5 69631417 69631445 -82905814 + AT_rich Low_complexity Low_complexity 1 28 0 2 1116 3323 183 106 43 chr5 69631638 69632374 -82904885 + RLTR25A LTR ERVK 1 782 -321 2 1116 664 114 106 0 chr5 69632407 69632530 -82904729 + RLTR23 LTR ERV1 11 146 -284 2 1116 359 0 0 42 chr5 69632537 69632585 -82904674 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1116 1759 147 11 92 chr5 69632585 69632944 -82904315 + RLTR23 LTR ERV1 101 430 0 2 1116 831 195 0 19 chr5 69632944 69633101 -82904158 + RLTR25A LTR ERVK 950 1103 0 2 1116 276 278 25 34 chr5 69633852 69633971 -82903288 + RLTR40 LTR ERVK 131 248 -569 2 1116 659 202 89 63 chr5 69633978 69634168 -82903091 - Lx5 LINE L1 0 7050 6856 2 1116 2799 208 11 25 chr5 69634174 69634736 -82902523 - Lx5 LINE L1 -420 6630 6077 2 1116 1343 130 79 0 chr5 69634729 69634944 -82902315 + Lx5 LINE L1 5603 5834 -1216 2 1116 1119 285 107 52 chr5 69634960 69635009 -82902250 + RLTR40 LTR ERVK 231 280 -537 2 1116 384 32 48 0 chr5 69635009 69635071 -82902188 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1116 1119 285 107 52 chr5 69635071 69635535 -82901724 + RLTR40 LTR ERVK 281 771 -46 2 1116 751 216 62 153 chr5 69635820 69636094 -82901165 + ORR1C2 LTR MaLR 135 383 -1 2 1116 324 0 0 0 chr5 69636096 69636132 -82901127 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1116 222 189 0 0 chr5 69637196 69637233 -82900026 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1116 2426 135 211 0 chr5 69637912 69638401 -82898858 - L1_Mm LINE L1 -2493 3390 2799 2 1116 3736 101 13 0 chr5 69638401 69638937 -82898322 + L1_Mus3 LINE L1 6089 6631 -7 2 1116 296 384 94 26 chr5 69639045 69639310 -82897949 + MLT1E2 LTR MaLR 199 481 -146 2 1116 300 380 25 0 chr5 69639405 69639526 -82897733 - B1F2 SINE Alu -25 124 1 2 1116 211 352 47 31 chr5 69639783 69639912 -82897347 - MIR SINE MIR -82 180 50 2 1116 260 287 28 9 chr5 69640469 69640576 -82896683 - MTE2a LTR MaLR -310 109 1 2 1116 26 0 0 0 chr5 69640618 69640644 -82896615 + AT_rich Low_complexity Low_complexity 1 26 0 2 1116 387 0 0 0 chr5 69641147 69641190 -82896069 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1116 418 328 103 38 chr5 69641202 69641465 -82895794 - B4A SINE B4 -11 281 2 2 1116 249 33 0 0 chr5 69642416 69642446 -82894813 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2 1116 275 268 0 78 chr5 69642640 69642717 -82894542 + B1_Mur2 SINE Alu 77 147 -2 2 1116 250 26 0 49 chr5 69645667 69645708 -82891551 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1116 237 65 0 0 chr5 69645830 69645861 -82891398 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1116 393 269 116 35 chr5 69646696 69646719 -82890540 - B2_Mm2 SINE B2 -6 189 169 2 1116 357 62 0 0 chr5 69646719 69646767 -82890492 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1116 547 269 116 35 chr5 69646767 69646916 -82890343 - B3A SINE B2 -27 168 3 2 1116 25 51 0 0 chr5 69647211 69647250 -82890009 + AT_rich Low_complexity Low_complexity 1 39 0 2 1116 273 57 0 0 chr5 69647462 69647497 -82889762 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1116 4044 134 117 8 chr5 69647678 69648449 -82888810 + Lx3C LINE L1 6090 6944 -32 2 1116 189 0 0 0 chr5 69648453 69648474 -82888785 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1116 246 160 0 0 chr5 69648503 69648553 -82888706 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 2 1116 1030 309 143 17 chr5 69648621 69649102 -82888157 - Lx8 LINE L1 -60 7413 6872 2 1116 661 291 86 38 chr5 69649143 69649458 -82887801 + Lx9 LINE L1 7001 7330 -314 2 1116 299 380 0 9 chr5 69649523 69649637 -82887622 - PB1D7 SINE Alu -7 113 1 2 1116 298 297 0 81 chr5 69650397 69650496 -82886763 - PB1D10 SINE Alu 0 117 27 2 1116 3771 75 2 0 chr5 69650708 69651202 -82886057 - L1_Mus1 LINE L1 0 6567 6073 2 1116 336 236 105 66 chr5 69653732 69653981 -82883278 - L1M2 LINE L1 -611 5572 5314 2 1116 613 296 136 29 chr5 69654048 69654952 -82882307 - L1M2 LINE L1 -831 5312 4287 2 1116 764 31 20 0 chr5 69655090 69655188 -82882071 + (TTTC)n Simple_repeat Simple_repeat 4 103 0 2 1116 268 348 11 0 chr5 69655724 69655813 -82881446 + Lx8 LINE L1 6229 6318 -1155 2 1116 568 98 10 0 chr5 69655854 69655956 -82881303 + Lx LINE L1 6547 6649 -5 2 1116 312 172 0 0 chr5 69656272 69656330 -82880929 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1116 243 0 0 0 chr5 69656330 69656357 -82880902 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1116 764 119 16 0 chr5 69657265 69657391 -82879868 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 2 1116 282 253 11 0 chr5 69657574 69657661 -82879598 + (TG)n Simple_repeat Simple_repeat 2 89 0 2 1116 604 326 49 44 chr5 69657688 69658096 -82879163 + L1M5 LINE L1 4660 5069 -1077 2 1116 243 258 0 31 chr5 69658892 69658956 -82878303 + CT-rich Low_complexity Low_complexity 3 64 0 2 1116 435 92 0 0 chr5 69658976 69659041 -82878218 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1116 289 320 45 30 chr5 69659144 69659276 -82877983 - B4A SINE B4 -158 134 1 2 1116 23 60 0 43 chr5 69659871 69659941 -82877318 + AT_rich Low_complexity Low_complexity 1 67 0 2 1116 432 0 0 0 chr5 69660817 69660865 -82876394 + (TAA)n Simple_repeat Simple_repeat 1 48 0 2 1116 1771 320 18 13 chr5 69660869 69661467 -82875792 + Lx5 LINE L1 6455 7041 -9 2 1116 35 0 0 0 chr5 69661467 69661502 -82875757 + AT_rich Low_complexity Low_complexity 1 35 0 2 1116 1488 288 24 19 chr5 69662296 69662831 -82874428 - Lx6 LINE L1 -112 7348 6469 2 1116 309 297 86 25 chr5 69662992 69663154 -82874105 + L1M2 LINE L1 4999 5170 -973 2 1116 388 311 78 29 chr5 69663322 69663757 -82873502 + Lx8 LINE L1 5080 5590 -293 2 1116 441 286 9 0 chr5 69663763 69663868 -82873391 + B3A SINE B2 13 118 -80 2 1116 648 337 54 8 chr5 69664011 69664271 -82872988 + Lx8 LINE L1 6271 6542 -931 2 1116 375 324 29 0 chr5 69664358 69664497 -82872762 - Lx8 LINE L1 -677 6796 6654 2 1116 512 370 54 7 chr5 69664499 69664793 -82872466 + Lx8 LINE L1 6956 7263 -210 2 1116 450 36 0 0 chr5 69665013 69665069 -82872190 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1116 244 284 29 15 chr5 69665085 69665221 -82872038 + L1MC LINE L1 5350 5487 -857 2 1116 779 206 0 6 chr5 69665232 69665408 -82871851 + GA-rich Low_complexity Low_complexity 2 176 0 2 1116 1524 100 4 4 chr5 69665468 69665699 -82871560 + Lx LINE L1 6409 6639 -15 2 1116 4788 223 85 50 chr5 69665701 69667040 -82870219 + ORR1B1-int LTR MaLR 35 1420 -89 2 1116 231 152 0 0 chr5 69667443 69667489 -82869770 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1116 495 78 0 0 chr5 69667490 69667567 -82869692 + (GA)n Simple_repeat Simple_repeat 1 77 0 2 1116 360 0 0 0 chr5 69667575 69667615 -82869644 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1116 852 89 0 0 chr5 69668561 69668684 -82868575 + (TC)n Simple_repeat Simple_repeat 2 124 0 2 1116 996 227 90 25 chr5 69670487 69670844 -82866415 - Lx9 LINE L1 -6 7638 7259 2 1116 1684 271 18 12 chr5 69670844 69671333 -82865926 + Lx9 LINE L1 6771 7262 -382 2 1116 227 203 17 0 chr5 69672256 69672315 -82864944 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1116 503 267 61 89 chr5 69672334 69672614 -82864645 - B4A SINE B4 -18 274 3 2 1116 267 383 102 5 chr5 69672615 69672812 -82864447 - MLT2B1 LTR ERVL -81 439 224 2 1116 468 163 8 15 chr5 69673316 69673447 -82863812 + (CA)n Simple_repeat Simple_repeat 2 131 0 2 1116 6074 145 87 18 chr5 69673457 69674624 -82862635 + MTB-int LTR MaLR 2 1248 -10 2 1116 2958 68 8 3 chr5 69674605 69674990 -82862269 + MTB LTR MaLR 14 400 0 2 1116 486 0 0 0 chr5 69675006 69675060 -82862199 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1116 282 357 41 45 chr5 69676179 69676338 -82860921 + MIR SINE MIR 50 202 -60 2 1116 247 356 29 9 chr5 69676850 69676955 -82860304 - PB1D10 SINE Alu 0 117 11 2 1116 232 372 0 47 chr5 69676873 69676980 -82860279 - ID_B1 SINE B4 -52 172 71 2 1116 269 51 0 25 chr5 69677277 69677317 -82859942 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1116 5870 103 60 1 chr5 69677680 69678567 -82858692 + Lx3A LINE L1 6031 6969 -12 2 1116 254 372 80 63 chr5 69678595 69678882 -82858377 - MLT1D LTR MaLR -91 414 123 2 1116 210 158 0 0 chr5 69679951 69679989 -82857270 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 2 1116 916 297 116 25 chr5 69680335 69681419 -82855840 + L1MB3 LINE L1 4258 5445 -735 2 1116 456 65 13 25 chr5 69681456 69681535 -82855724 + (GGAA)n Simple_repeat Simple_repeat 1 78 0 2 1116 609 294 43 45 chr5 69681535 69682013 -82855246 + L1MB3 LINE L1 5479 5955 -228 2 1116 271 242 126 8 chr5 69684857 69684947 -82852312 + B4 SINE B4 1 98 -67 2 1116 234 62 0 0 chr5 69684987 69685019 -82852240 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1116 240 143 0 0 chr5 69685654 69685696 -82851563 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1116 3068 112 59 12 chr5 69686652 69687158 -82850101 - Lx LINE L1 -3 6651 6122 2 1116 414 70 18 0 chr5 69688818 69688875 -82848384 - L1VL1 LINE L1 -5879 543 486 2 1116 606 79 0 0 chr5 69688876 69688952 -82848307 + L1Md_F2 LINE L1 5509 5584 -299 2 1116 6811 93 39 2 chr5 69688955 69689913 -82847346 + L1Md_F2 LINE L1 5588 6580 -2 2 1116 441 0 0 0 chr5 69690218 69690267 -82846992 + (TAA)n Simple_repeat Simple_repeat 2 50 0 2 1116 325 164 0 16 chr5 69691556 69691618 -82845641 - PB1D7 SINE Alu -8 112 52 2 1116 634 24 24 0 chr5 69692132 69692216 -82845043 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 1116 438 324 95 29 chr5 69693150 69693360 -82843899 + Arthur1 DNA Tip100 606 829 -3118 2 1116 4945 110 56 9 chr5 69693634 69694407 -82842852 + Lx3A LINE L1 6172 6980 -1 3 1116 495 73 0 0 chr5 69694605 69694673 -82842586 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1116 1176 55 0 0 chr5 69695337 69695483 -82841776 + B1_Mus2 SINE Alu 2 147 0 3 1116 207 204 0 0 chr5 69695483 69695527 -82841732 + A-rich Low_complexity Low_complexity 1 44 0 3 1116 300 53 0 0 chr5 69695645 69695683 -82841576 + (TATG)n Simple_repeat Simple_repeat 2 39 0 3 1116 443 319 156 55 chr5 69696670 69696998 -82840261 + ORR1D2 LTR MaLR 1 361 -9 3 1116 296 301 108 99 chr5 69697578 69697810 -82839449 + Lx8 LINE L1 7196 7429 -44 3 1116 22 80 0 0 chr5 69697850 69697900 -82839359 + AT_rich Low_complexity Low_complexity 1 50 0 3 1116 2199 108 31 34 chr5 69698914 69699268 -82837991 + Lx3B LINE L1 6618 6970 -3 3 1116 468 51 0 0 chr5 69699283 69699342 -82837917 + (TAA)n Simple_repeat Simple_repeat 2 60 0 3 1116 2137 86 51 0 chr5 69699424 69699737 -82837522 + L1_Mus4 LINE L1 6303 6631 -5 3 1116 328 337 83 58 chr5 69701050 69701255 -82836004 + MLT1D LTR MaLR 293 502 -3 3 1116 244 313 87 39 chr5 69701303 69701406 -82835853 + PB1D7 SINE Alu 3 110 -10 3 1116 24 32 0 0 chr5 69701539 69701570 -82835689 + AT_rich Low_complexity Low_complexity 1 31 0 3 1116 244 228 0 0 chr5 69702004 69702061 -82835198 + LTR84a LTR ERVL 648 704 -53 3 1116 21 0 0 0 chr5 69702347 69702368 -82834891 + AT_rich Low_complexity Low_complexity 1 21 0 3 1116 243 79 0 0 chr5 69702905 69702943 -82834316 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1116 1479 261 30 17 chr5 69703943 69704305 -82832954 - ORR1D2 LTR MaLR -3 367 1 3 1116 1003 96 0 0 chr5 69704424 69704559 -82832700 - B1_Mus1 SINE Alu -12 136 2 3 1116 319 363 16 24 chr5 69704738 69704865 -82832394 - B4 SINE B4 -165 127 2 3 1116 351 319 124 21 chr5 69705463 69705649 -82831610 + MER20 DNA MER1_type 2 206 -13 3 1116 21 0 0 0 chr5 69706023 69706044 -82831215 + AT_rich Low_complexity Low_complexity 1 21 0 3 1116 344 348 82 124 chr5 69706525 69706840 -82830419 + ORR1E LTR MaLR 57 358 -1 3 1116 222 128 0 0 chr5 69707210 69707249 -82830010 + (A)n Simple_repeat Simple_repeat 1 39 0 3 1116 1043 256 44 54 chr5 69707595 69707983 -82829276 + ORR1C2 LTR MaLR 1 384 0 3 1116 548 254 30 124 chr5 69707993 69708195 -82829064 + MLT1B LTR MaLR 208 390 0 3 1116 782 321 65 60 chr5 69708701 69709052 -82828207 + ORR1E LTR MaLR 1 353 -6 3 1116 7933 62 5 1 chr5 69709817 69711019 -82826240 + L1_Mus1 LINE L1 5361 6567 0 3 1116 180 298 18 0 chr5 69711304 69711361 -82825898 + L2 LINE L2 1995 2052 -1367 3 1116 2794 108 9 5 chr5 69711654 69712073 -82825186 + BGLII LTR ERVK 1 421 0 3 1116 203 32 65 0 chr5 69712128 69712159 -82825100 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 3 1116 730 164 38 49 chr5 69712159 69712322 -82824937 - B2_Mm2 SINE B2 -33 162 2 3 1116 882 314 82 50 chr5 69712577 69713042 -82824217 - LTR80A LTR ERVL -103 480 1 3 1116 480 81 0 0 chr5 69713394 69713468 -82823791 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1116 24 32 0 0 chr5 69714248 69714279 -82822980 + AT_rich Low_complexity Low_complexity 1 31 0 3 1116 198 0 0 0 chr5 69714695 69714717 -82822542 + (TGG)n Simple_repeat Simple_repeat 1 22 0 3 1116 413 278 72 13 chr5 69714845 69714998 -82822261 + RMER5 LTR ERV1 15 176 -358 3 1116 478 263 29 14 chr5 69715025 69715164 -82822095 + RMER5 LTR ERV1 384 524 -10 3 1116 21 0 0 0 chr5 69715872 69715893 -82821366 + AT_rich Low_complexity Low_complexity 1 21 0 3 1116 777 365 54 48 chr5 69716137 69716638 -82820621 + MLT1J-int LTR MaLR 707 1210 -177 3 1116 180 49 47 47 chr5 69716790 69716833 -82820426 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3 1116 1230 245 40 48 chr5 69716839 69717212 -82820047 + ORR1D2 LTR MaLR 1 370 0 3 1116 501 313 40 33 chr5 69717254 69717406 -82819853 - RSINE1 SINE B4 -10 155 3 3 1116 497 369 40 51 chr5 69718645 69718919 -82818340 - MLT1C LTR MaLR -24 443 173 3 1116 266 171 14 0 chr5 69720020 69720090 -82817169 + (CA)n Simple_repeat Simple_repeat 1 71 0 3 1116 723 220 21 0 chr5 69720190 69720331 -82816928 + ORR1D1 LTR MaLR 3 146 -228 3 1116 279 0 0 0 chr5 69720332 69720363 -82816896 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 1116 597 268 187 30 chr5 69721126 69721361 -82815898 + Charlie13a DNA Charlie 956 1227 -287 3 1116 237 369 19 0 chr5 69721750 69721853 -82815406 - MIRb SINE MIR -5 263 159 3 1116 677 242 71 20 chr5 69722594 69722792 -82814467 - B3 SINE B2 -6 210 3 3 1116 1830 87 23 56 chr5 69722858 69723162 -82814097 - L1_Mus1 LINE L1 -442 6125 5832 3 1116 3258 89 22 0 chr5 69723162 69723609 -82813650 + L1_Mus1 LINE L1 6111 6567 0 3 1116 216 182 0 0 chr5 69723625 69723669 -82813590 + A-rich Low_complexity Low_complexity 1 44 0 3 1116 1062 272 36 8 chr5 69723686 69724049 -82813210 + ORR1D1 LTR MaLR 1 373 -1 3 1116 309 314 0 19 chr5 69724867 69724971 -82812288 + G-rich Low_complexity Low_complexity 4 105 0 3 1116 365 304 14 21 chr5 69724977 69725118 -82812141 + B1F1 SINE Alu 1 140 -9 3 1116 1519 4 0 17 chr5 69725151 69725383 -82811876 + (TTC)n Simple_repeat Simple_repeat 1 227 0 3 1116 203 103 26 0 chr5 69726074 69726113 -82811146 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1116 258 32 0 0 chr5 69726122 69726153 -82811106 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1116 297 0 0 0 chr5 69726352 69726385 -82810874 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1116 450 0 0 0 chr5 69727154 69727204 -82810055 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 1116 246 136 0 0 chr5 69727256 69727300 -82809959 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1116 621 189 219 17 chr5 69727725 69727903 -82809356 - B3 SINE B2 0 216 3 3 1116 261 350 8 8 chr5 69728112 69728230 -82809029 - MIR SINE MIR -88 174 57 3 1116 393 22 0 0 chr5 69728581 69728627 -82808632 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 3 1116 590 26 13 0 chr5 69729529 69729605 -82807654 + (TG)n Simple_repeat Simple_repeat 2 78 0 3 1116 25 0 0 0 chr5 69729869 69729894 -82807365 + AT_rich Low_complexity Low_complexity 1 25 0 3 1116 248 288 38 9 chr5 69730018 69730123 -82807136 + PB1D10 SINE Alu 1 108 -9 3 1117 419 0 20 0 chr5 69730481 69730532 -82806727 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1117 378 0 0 0 chr5 69730737 69730779 -82806480 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1117 516 16 0 0 chr5 69731190 69731251 -82806008 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1117 21 36 0 0 chr5 69732423 69732451 -82804808 + GC_rich Low_complexity Low_complexity 1 28 0 3 1117 456 35 0 0 chr5 69733375 69733433 -82803826 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1117 360 0 0 0 chr5 69733437 69733477 -82803782 + (GA)n Simple_repeat Simple_repeat 2 41 0 3 1117 323 209 15 15 chr5 69736122 69736190 -82801069 + ID4_ SINE ID 10 77 -6 3 1117 234 262 74 149 chr5 69736600 69736748 -82800511 + B1F SINE Alu 10 146 -3 3 1117 23 33 0 0 chr5 69737158 69737188 -82800071 + AT_rich Low_complexity Low_complexity 1 30 0 3 1117 289 335 55 71 chr5 69738324 69738507 -82798752 + B3A SINE B2 1 180 -18 3 1117 1586 32 0 21 chr5 69738542 69738733 -82798526 - B2_Mm1a SINE B2 -6 187 1 3 1117 1219 143 10 0 chr5 69739306 69739515 -82797744 - Lx2 LINE L1 -1 6996 6786 3 1117 439 369 48 43 chr5 69739655 69739862 -82797397 + B3A SINE B2 4 211 -5 3 1117 491 315 86 42 chr5 69740323 69740609 -82796650 - MLT1G1 LTR MaLR -244 305 1 3 1117 244 215 12 12 chr5 69740654 69740734 -82796525 - Lx9 LINE L1 -1 7643 7564 3 1117 181 240 24 8 chr5 69740752 69740878 -82796381 + (TATATG)n Simple_repeat Simple_repeat 4 131 0 3 1117 2430 272 38 32 chr5 69740932 69741765 -82795494 - Lx9 LINE L1 -422 7222 6385 3 1117 429 141 0 0 chr5 69741794 69741865 -82795394 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1117 234 0 0 0 chr5 69741872 69741898 -82795361 + (GA)n Simple_repeat Simple_repeat 1 26 0 3 1117 454 57 29 0 chr5 69742785 69742855 -82794404 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 3 1117 273 29 0 0 chr5 69743696 69743730 -82793529 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1117 406 329 18 24 chr5 69745222 69745390 -82791869 - MIR SINE MIR -30 232 66 3 1117 350 362 93 39 chr5 69745893 69746226 -82791033 - MER77 LTR ERVL -4 603 253 3 1117 181 215 152 15 chr5 69746341 69746407 -82790852 + L3 LINE CR1 2845 2919 -1570 3 1117 378 167 0 0 chr5 69747522 69747606 -82789653 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 1117 261 0 0 0 chr5 69747839 69747868 -82789391 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1117 360 0 0 0 chr5 69748295 69748335 -82788924 + (CAAAC)n Simple_repeat Simple_repeat 1 40 0 3 1117 303 261 58 0 chr5 69748573 69748642 -82788617 + B3 SINE B2 1 73 -143 3 1117 213 39 0 0 chr5 69748780 69748806 -82788453 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1117 329 165 140 44 chr5 69748809 69748923 -82788336 + Lx4B LINE L1 6914 7038 -20 3 1117 219 36 0 0 chr5 69748925 69748953 -82788306 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1117 315 372 52 0 chr5 69749065 69749218 -82788041 + L1MC4a LINE L1 5739 5899 -1983 3 1117 21 36 0 0 chr5 69749314 69749342 -82787917 + AT_rich Low_complexity Low_complexity 1 28 0 3 1117 693 249 152 0 chr5 69750104 69750281 -82786978 - ORR1C1 LTR MaLR -174 204 1 3 1117 294 308 17 44 chr5 69750287 69750467 -82786792 + L1MC4a LINE L1 7419 7593 -192 3 1117 1761 216 154 14 chr5 69751309 69751821 -82785438 + RLTR31A_Mm LTR ERVK 1 584 0 3 1117 5991 174 20 22 chr5 69751884 69753056 -82784203 + RMER12B LTR ERVK 1 1169 -235 4 1117 254 232 162 20 chr5 69753109 69753327 -82783932 + RLTR21 LTR ERVK 1077 1253 -319 4 1117 2334 60 6 19 chr5 69753640 69753963 -82783296 - L1Md_F2 LINE L1 -2 6580 6262 4 1117 1133 90 0 0 chr5 69754434 69754579 -82782680 + B1_Mus1 SINE Alu 2 146 -2 4 1117 8969 98 4 3 chr5 69754891 69756297 -82780962 - L1_Mm LINE L1 -3174 2709 1302 4 1117 2709 116 11 7 chr5 69756293 69756737 -82780522 - L1_Mm LINE L1 -590 5293 4848 4 1117 523 341 68 10 chr5 69756839 69757297 -82779962 + L1MB5 LINE L1 5508 5993 -181 4 1117 1148 215 34 135 chr5 69757297 69757711 -82779548 - ORR1D1 LTR MaLR 0 374 3 4 1117 523 341 68 10 chr5 69757711 69757756 -82779503 + L1MB5 LINE L1 5994 6039 -135 4 1117 344 97 16 0 chr5 69757859 69757921 -82779338 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1117 21 36 0 0 chr5 69758190 69758218 -82779041 + AT_rich Low_complexity Low_complexity 1 28 0 4 1117 315 127 0 0 chr5 69759319 69759382 -82777877 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 4 1117 4347 14 2 12 chr5 69759530 69760028 -82777231 - MT2_Mm LTR ERVL 0 493 1 4 1117 302 0 0 0 chr5 69760028 69760066 -82777193 - MERVL-int LTR ERVL 0 5485 5448 4 1117 390 167 46 35 chr5 69760066 69760153 -82777106 - ORR1A3-int LTR MaLR -1323 640 553 4 1117 38735 16 14 0 chr5 69760153 69765440 -82771819 - MERVL-int LTR ERVL -125 5360 1 4 1117 4342 12 2 24 chr5 69765440 69765944 -82771315 - MT2_Mm LTR ERVL 0 493 1 4 1117 1542 242 58 64 chr5 69766335 69766803 -82770456 + RMER19C LTR ERVK 147 611 0 4 1117 227 371 17 81 chr5 69766805 69766978 -82770281 - MIRc SINE MIR -104 164 3 4 1117 265 258 91 30 chr5 69767983 69768115 -82769144 + MER82 DNA MER2_type 109 248 -405 4 1117 202 289 54 69 chr5 69768502 69768648 -82768611 + MIR SINE MIR 4 156 -52 4 1117 22 0 0 0 chr5 69769163 69769185 -82768074 + AT_rich Low_complexity Low_complexity 1 22 0 4 1117 201 167 0 0 chr5 69769266 69769302 -82767957 + A-rich Low_complexity Low_complexity 1 36 0 4 1117 360 0 0 0 chr5 69769635 69769675 -82767584 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 4 1117 758 301 36 60 chr5 69772550 69773091 -82764168 + RLTR12B LTR ERVK 1 499 -29 4 1117 243 258 14 101 chr5 69773329 69773398 -82763861 + AmnSINE1 SINE SINE 25 87 -488 4 1117 329 319 42 31 chr5 69773523 69773811 -82763448 - L1MA4A LINE L1 -450 5853 5563 4 1117 423 119 0 0 chr5 69773862 69773929 -82763330 + (CATA)n Simple_repeat Simple_repeat 3 69 0 4 1117 624 144 108 31 chr5 69773929 69774058 -82763201 - RMER12B LTR ERVK -151 1253 1115 4 1117 2822 161 18 18 chr5 69774065 69774571 -82762688 + Lx2B LINE L1 6482 6987 -13 4 1117 15869 133 7 1 chr5 69774571 69777303 -82759956 - L1_Mm LINE L1 -524 5359 2612 4 1117 779 103 0 0 chr5 69777304 69777411 -82759848 - U6 snRNA snRNA 0 107 1 4 1117 2798 156 73 4 chr5 69777411 69777893 -82759366 - RMER12B LTR ERVK -889 515 1 4 1117 423 211 92 3 chr5 69778192 69778315 -82758944 - B1F SINE Alu -1 148 9 4 1117 22 0 0 0 chr5 69778613 69778635 -82758624 + AT_rich Low_complexity Low_complexity 1 22 0 4 1117 2465 141 85 0 chr5 69779288 69779722 -82757537 + Lx3C LINE L1 6504 6974 -2 4 1117 405 0 0 0 chr5 69780582 69780627 -82756632 + (AAATG)n Simple_repeat Simple_repeat 3 47 0 4 1117 6339 143 24 11 chr5 69780674 69782550 -82754709 - Lx LINE L1 0 6654 4751 4 1117 5371 138 12 52 chr5 69782550 69783578 -82753681 + L1_Mm LINE L1 4178 5164 -719 4 1117 282 304 13 13 chr5 69783818 69783905 -82753354 + ID4 SINE ID 10 96 -56 4 1117 300 343 41 3 chr5 69784057 69784213 -82753046 + MER5A DNA MER1_type 1 166 0 4 1117 455 189 0 29 chr5 69784418 69784554 -82752705 + (TA)n Simple_repeat Simple_repeat 1 132 0 4 1117 604 307 0 0 chr5 69784821 69784958 -82752301 - RSINE1 SINE B4 -25 140 4 4 1117 541 270 114 6 chr5 69786039 69786214 -82751045 + L3 LINE CR1 2003 2196 -2293 4 1117 7316 81 10 4 chr5 69786721 69787743 -82749516 + Lx3_Mus LINE L1 5982 7009 0 4 1117 651 211 15 23 chr5 69788391 69788522 -82748737 + B1_Mus1 SINE Alu 19 148 0 4 1117 286 322 9 9 chr5 69788579 69788695 -82748564 - Tigger5 DNA MER2_type 0 2406 2291 4 1117 659 335 23 14 chr5 69788694 69788912 -82748347 - Tigger5 DNA MER2_type -2167 239 20 4 1117 460 307 58 19 chr5 69789000 69789156 -82748103 + RSINE1 SINE B4 4 165 0 4 1117 258 424 60 23 chr5 69790328 69790630 -82746629 + L2 LINE L2 1216 1528 -1891 4 1117 1845 142 46 19 chr5 69790863 69791187 -82746072 - Lx2 LINE L1 0 6997 6665 4 1117 367 245 123 0 chr5 69791203 69791309 -82745950 - PB1D9 SINE Alu 0 120 2 4 1117 296 221 19 57 chr5 69791761 69791855 -82745404 + MTE2a LTR MaLR 1 86 -293 4 1117 490 278 65 70 chr5 69791902 69792088 -82745171 + MTE2a LTR MaLR 194 378 -1 4 1117 276 30 0 0 chr5 69792632 69792665 -82744594 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 4 1117 2783 175 28 4 chr5 69792665 69793158 -82744101 - Lx5 LINE L1 -259 6791 6287 4 1117 204 67 0 0 chr5 69794274 69794304 -82742955 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1117 352 282 34 40 chr5 69794905 69795053 -82742206 - RSINE1 SINE B4 -16 149 3 4 1117 738 314 60 31 chr5 69795162 69795613 -82741646 - Lx8 LINE L1 -121 7352 6889 4 1117 933 9 0 0 chr5 69795707 69795813 -82741446 + (TTC)n Simple_repeat Simple_repeat 1 106 0 4 1117 302 286 85 9 chr5 69796290 69796396 -82740863 + B1F SINE Alu 21 134 -15 4 1117 1052 116 0 6 chr5 69796470 69796643 -82740616 + (GGAA)n Simple_repeat Simple_repeat 1 172 0 4 1117 423 375 17 11 chr5 69797959 69798137 -82739122 - LTR85b LTR Gypsy? 0 784 606 4 1117 218 208 0 0 chr5 69799011 69799059 -82738200 + T-rich Low_complexity Low_complexity 1 48 0 4 1117 545 329 84 26 chr5 69799170 69799513 -82737746 - Lx9 LINE L1 -182 7462 7100 4 1117 402 146 0 0 chr5 69799652 69799748 -82737511 + (TG)n Simple_repeat Simple_repeat 2 97 0 4 1117 495 324 36 0 chr5 69799753 69799892 -82737367 - RSINE1 SINE B4 0 165 22 4 1117 635 143 9 0 chr5 69800551 69800656 -82736603 + B1_Mus2 SINE Alu 42 147 0 4 1117 211 211 0 0 chr5 69800658 69800710 -82736549 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 4 1117 622 335 23 37 chr5 69802063 69802156 -82735103 + ID_B1 SINE B4 10 101 -123 4 1117 2751 170 43 4 chr5 69802156 69802663 -82734596 - RLTR11A2 LTR ERVK 0 527 1 4 1117 622 335 23 37 chr5 69802663 69802786 -82734473 + ID_B1 SINE B4 102 223 -1 4 1117 743 165 53 0 chr5 69802803 69802936 -82734323 + B1_Mus1 SINE Alu 9 148 0 4 1117 333 0 0 0 chr5 69803381 69803418 -82733841 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 4 1117 3323 78 43 11 chr5 69803421 69803885 -82733374 - L1_Mus4 LINE L1 -13 6623 6145 4 1117 1303 133 13 0 chr5 69803885 69804100 -82733159 + L1_Mur2 LINE L1 4652 4866 -1011 4 1117 5936 69 18 26 chr5 69804100 69804934 -82732325 - L1_Mus2 LINE L1 0 6566 5740 4 1117 588 358 107 35 chr5 69805024 69805619 -82731640 + L2a LINE L2 2479 3123 -303 4 1117 1368 67 0 0 chr5 69805629 69805809 -82731450 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1117 1151 106 0 16 chr5 69805812 69805995 -82731264 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1117 813 296 70 14 chr5 69806110 69806466 -82730793 - MTE2b LTR MaLR -2 377 2 4 1117 460 215 31 0 chr5 69807670 69807833 -82729426 + GA-rich Low_complexity Low_complexity 2 169 0 4 1117 268 244 12 12 chr5 69807838 69807921 -82729338 + L1MC LINE L1 5523 5605 -2180 4 1117 398 62 31 0 chr5 69807924 69807989 -82729270 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 4 1117 1486 257 102 19 chr5 69808068 69808553 -82728706 - RLTR20B3 LTR ERVK -27 541 21 4 1117 319 272 199 12 chr5 69808583 69808754 -82728505 + L1ME2 LINE L1 5795 5997 -167 4 1117 249 328 101 43 chr5 69808926 69809114 -82728145 - MIR SINE MIR -40 222 24 4 1117 587 222 7 0 chr5 69809462 69809615 -82727644 + (TA)n Simple_repeat Simple_repeat 2 155 0 4 1117 1097 311 22 14 chr5 69809616 69810125 -82727134 - L1MB3 LINE L1 -20 6163 5651 4 1117 1145 140 27 0 chr5 69810276 69810462 -82726797 - B2_Mm2 SINE B2 -4 191 1 4 1117 378 0 0 0 chr5 69810672 69810714 -82726545 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1117 814 170 7 0 chr5 69810853 69810994 -82726265 + RMER19B LTR ERVK 5 146 -756 4 1117 5447 84 28 24 chr5 69811008 69811469 -82725790 - L1_Mur1 LINE L1 -490 5396 4917 4 1117 240 35 0 0 chr5 69811469 69811498 -82725761 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1117 5447 84 28 24 chr5 69811498 69811905 -82725354 - L1_Mur1 LINE L1 -970 4916 4526 4 1117 1233 91 0 0 chr5 69811900 69812075 -82725184 + Lx3_Mus LINE L1 6496 6670 -339 4 1117 2457 103 56 0 chr5 69812075 69812169 -82725090 - RLTR10D LTR ERVK 0 359 266 4 1117 462 36 0 0 chr5 69812169 69812225 -82725034 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1117 2457 103 56 0 chr5 69812225 69812470 -82724789 - RLTR10D LTR ERVK -94 265 2 4 1117 46820 75 10 18 chr5 69812470 69819061 -82718198 - IAP-d-int LTR ERVK 0 6542 1 4 1117 2556 98 0 45 chr5 69819061 69819437 -82717822 - RLTR10D LTR ERVK 0 359 1 4 1117 1539 163 30 4 chr5 69819437 69819708 -82717551 + Lx3_Mus LINE L1 6665 6942 -67 4 1117 3447 188 51 5 chr5 69819776 69820425 -82716834 + RMER19B LTR ERVK 210 878 -24 4 1117 28866 109 28 2 chr5 69820446 69826463 -82710796 + L1_Mus1 LINE L1 380 6567 0 4 1117 22 0 0 0 chr5 69826472 69826494 -82710765 + AT_rich Low_complexity Low_complexity 1 22 0 4 1117 594 0 0 0 chr5 69827122 69827188 -82710071 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1117 429 20 0 0 chr5 69827726 69827776 -82709483 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1117 552 42 0 0 chr5 69827776 69827847 -82709412 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 4 1117 880 158 12 0 chr5 69827854 69828025 -82709234 + GA-rich Low_complexity Low_complexity 3 175 0 4 1117 22 0 0 0 chr5 69829973 69829995 -82707264 + AT_rich Low_complexity Low_complexity 1 22 0 4 1117 657 281 12 18 chr5 69830280 69830443 -82706816 + RSINE1 SINE B4 3 164 -1 4 1117 276 370 40 11 chr5 69830540 69830715 -82706544 + MIRb SINE MIR 81 260 -8 4 1117 191 224 122 0 chr5 69831466 69831515 -82705744 - MIR SINE MIR -137 125 71 4 1117 794 265 65 48 chr5 69832433 69832770 -82704489 + RLTR15 LTR ERVK 1 343 -16 4 1117 640 254 77 6 chr5 69832786 69832842 -82704417 - B3 SINE B2 0 216 150 5 1117 336 24 0 0 chr5 69832842 69832883 -82704376 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1117 640 256 67 17 chr5 69832883 69833031 -82704228 - B3 SINE B2 -54 162 9 5 1117 183 129 0 0 chr5 69833591 69833622 -82703637 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1117 384 22 0 0 chr5 69833622 69833667 -82703592 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1117 1370 249 80 0 chr5 69833806 69834167 -82703092 + Lx6 LINE L1 6407 6796 -664 5 1117 374 245 85 0 chr5 69834165 69834271 -82702988 + Lx6 LINE L1 7342 7456 -4 5 1117 21 36 0 0 chr5 69834324 69834352 -82702907 + AT_rich Low_complexity Low_complexity 1 28 0 5 1117 646 196 44 35 chr5 69834467 69834621 -82702638 - MTD LTR MaLR -15 404 248 5 1117 290 338 33 67 chr5 69834651 69834794 -82702465 - MTD LTR MaLR -148 271 115 5 1117 6193 52 3 0 chr5 69835107 69835875 -82701384 - L1Md_F2 LINE L1 0 6582 5813 5 1117 346 184 103 26 chr5 69837851 69837929 -82699330 + B3 SINE B2 133 216 0 5 1117 630 186 64 8 chr5 69837952 69838077 -82699182 + B3 SINE B2 1 132 -84 5 1117 230 116 23 0 chr5 69838565 69838608 -82698651 + (GGGAGA)n Simple_repeat Simple_repeat 2 45 0 5 1117 283 383 35 20 chr5 69838612 69838812 -82698447 - ID_B1 SINE B4 -19 205 3 5 1117 227 265 122 0 chr5 69839679 69839777 -82697482 - Tigger5 DNA MER2_type -3 2403 2294 5 1117 23 0 0 0 chr5 69840594 69840617 -82696642 + AT_rich Low_complexity Low_complexity 1 23 0 5 1117 22 0 0 0 chr5 69841680 69841702 -82695557 + AT_rich Low_complexity Low_complexity 1 22 0 5 1117 1750 208 26 6 chr5 69841948 69842292 -82694967 + ORR1D1 LTR MaLR 1 351 -23 5 1117 1771 155 10 3 chr5 69842360 69842664 -82694595 + Lx2 LINE L1 6687 6992 -5 5 1117 423 0 0 0 chr5 69843915 69843962 -82693297 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1117 631 199 0 25 chr5 69844189 69844349 -82692910 + GA-rich Low_complexity Low_complexity 2 157 0 5 1117 423 0 0 0 chr5 69844349 69844396 -82692863 + (CAAG)n Simple_repeat Simple_repeat 1 47 0 5 1117 306 102 0 0 chr5 69844623 69844640 -82692619 + (CA)n Simple_repeat Simple_repeat 2 18 0 5 1117 555 29 0 0 chr5 69844640 69844709 -82692550 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 1117 306 102 0 0 chr5 69844709 69844740 -82692519 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1117 211 248 28 28 chr5 69844787 69844895 -82692364 + (TATAA)n Simple_repeat Simple_repeat 1 108 0 5 1117 445 264 7 13 chr5 69845099 69845249 -82692010 + Lx9 LINE L1 7486 7634 -10 5 1117 3798 178 94 1 chr5 69845977 69846701 -82690558 - Lx5 LINE L1 -3 7047 6257 5 1117 374 353 20 46 chr5 69847671 69847867 -82689392 + Tigger1 DNA MER2_type 21 211 -2207 5 1117 229 290 0 16 chr5 69847998 69848061 -82689198 + B4A SINE B4 2 63 -229 5 1117 3832 237 73 18 chr5 69848073 69849013 -82688246 - RMER1B Other Other -1 1065 74 5 1117 971 271 52 13 chr5 69849312 69849622 -82687637 + Lx8 LINE L1 7134 7455 -18 5 1117 24 0 0 0 chr5 69849622 69849646 -82687613 + AT_rich Low_complexity Low_complexity 1 24 0 5 1117 2815 290 50 31 chr5 69849646 69850662 -82686597 + Tigger1 DNA MER2_type 1299 2333 -85 5 1117 483 293 58 40 chr5 69850938 69851112 -82686147 - MER34 LTR ERV1 -340 202 26 5 1117 181 362 26 71 chr5 69851740 69851853 -82685406 + L4 LINE RTE 548 655 -1374 5 1117 23 54 0 0 chr5 69853978 69854015 -82683244 + AT_rich Low_complexity Low_complexity 1 37 0 5 1117 241 474 23 11 chr5 69854379 69854554 -82682705 + MER91A DNA Tip100 20 196 0 5 1117 387 0 0 0 chr5 69854729 69854772 -82682487 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1117 1092 89 7 0 chr5 69855158 69855304 -82681955 + B1_Mus1 SINE Alu 2 148 0 5 1117 216 191 0 0 chr5 69855306 69855353 -82681906 + A-rich Low_complexity Low_complexity 1 47 0 5 1117 260 271 42 0 chr5 69856227 69856323 -82680936 + GA-rich Low_complexity Low_complexity 3 102 0 5 1117 529 344 38 19 chr5 69857052 69857316 -82679943 - Charlie25 DNA MER1_type -2173 351 83 5 1117 495 0 0 0 chr5 69857643 69857698 -82679561 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1117 560 183 269 35 chr5 69858061 69858290 -82678969 + ORR1C1 LTR MaLR 11 378 0 5 1117 319 284 64 9 chr5 69858311 69858421 -82678838 - RMER15 LTR ERVL -15 560 445 5 1117 223 85 43 0 chr5 69859134 69859181 -82678078 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 5 139 1807 82 179 13 chr5 69861093 69861400 -82675859 - L1_Mus3 LINE L1 -1 6637 6280 5 1118 2399 82 21 3 chr5 69861399 69861730 -82675529 + L1_Mus3 LINE L1 5918 6254 -384 5 1118 283 246 58 0 chr5 69862071 69862140 -82675119 - ORR1D2 LTR MaLR -290 80 8 5 1118 1186 131 56 0 chr5 69862353 69862551 -82674708 + L1_Mus3 LINE L1 6425 6633 -5 5 1118 357 188 12 59 chr5 69862988 69863073 -82674186 + MTEa LTR MaLR 279 359 -20 5 1118 218 207 17 0 chr5 69863447 69863505 -82673754 + G-rich Low_complexity Low_complexity 2 60 0 5 1118 898 68 8 15 chr5 69864228 69864362 -82672897 + L1_Mus2 LINE L1 6434 6566 0 5 1118 647 199 89 0 chr5 69864589 69864735 -82672524 - RMER4A LTR ERVK 0 466 308 5 1118 2051 160 94 28 chr5 69864737 69865174 -82672085 - RMER4A LTR ERVK 0 466 1 5 1118 333 0 0 0 chr5 69865707 69865744 -82671515 + (TAGA)n Simple_repeat Simple_repeat 3 39 0 5 1118 38393 6 0 0 chr5 69866769 69872347 -82664912 + L1Md_A LINE L1 9 5586 -297 5 1118 8997 4 0 0 chr5 69872347 69873343 -82663916 + L1Md_A LINE L1 5587 6582 0 5 1118 638 275 53 0 chr5 69874031 69874238 -82663021 - RLTR45 LTR ERVK 0 482 265 5 1118 424 301 103 43 chr5 69875059 69875340 -82661919 - L2a LINE L2 -2 3424 3127 5 1118 216 143 0 0 chr5 69875453 69875477 -82661782 + (TC)n Simple_repeat Simple_repeat 1 24 0 5 1118 348 43 0 0 chr5 69875477 69875523 -82661736 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1118 960 115 0 0 chr5 69875523 69875728 -82661531 + (TC)n Simple_repeat Simple_repeat 1 205 0 5 1118 1926 84 6 105 chr5 69876243 69876576 -82660683 + L1_Mus3 LINE L1 6335 6634 -4 5 1118 287 25 0 24 chr5 69876850 69876891 -82660368 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 5 1118 2229 205 64 60 chr5 69876894 69877412 -82659847 + RLTR25A LTR ERVK 1 520 -583 5 1118 995 248 147 27 chr5 69877344 69877443 -82659816 + ORR1A3-int LTR MaLR 499 742 -1221 5 1118 1044 184 80 33 chr5 69877443 69877656 -82659603 + MT2B LTR ERVL 35 257 -344 5 1118 995 248 147 27 chr5 69877656 69877731 -82659528 + ORR1A3-int LTR MaLR 743 932 -1031 5 1118 678 13 0 0 chr5 69877731 69877810 -82659449 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 5 1118 995 248 147 27 chr5 69877810 69877824 -82659435 + ORR1A3-int LTR MaLR 933 948 -1015 5 1118 13545 66 9 3 chr5 69877861 69880324 -82656935 - L1Md_F2 LINE L1 -3 6579 4099 5 1118 614 205 19 146 chr5 69880325 69880531 -82656728 + RLTR25A LTR ERVK 617 796 -232 5 1118 218 348 49 89 chr5 69880690 69880914 -82656345 + ID_B1 SINE B4 6 220 -4 5 1118 221 309 0 12 chr5 69880932 69881014 -82656245 + (CATA)n Simple_repeat Simple_repeat 4 84 0 5 1118 188 0 0 69 chr5 69881125 69881154 -82656105 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 5 1118 688 103 256 0 chr5 69881157 69881274 -82655985 + B1_Mm SINE Alu 1 147 0 5 1118 37823 43 0 2 chr5 69881859 69888058 -82649201 - L1Md_T LINE L1 0 6585 304 5 1118 314 359 0 17 chr5 69888596 69888715 -82648544 + MTEa LTR MaLR 4 120 -259 5 1118 294 386 31 36 chr5 69888715 69888819 -82648440 + MT2A LTR ERVL 4 225 -308 5 1118 535 321 52 35 chr5 69888863 69889092 -82648167 + MT2A LTR ERVL 228 460 -73 5 1118 1195 55 0 7 chr5 69889212 69889360 -82647899 + B1_Mm SINE Alu 1 147 0 5 1118 256 24 24 24 chr5 69889363 69889405 -82647854 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 5 1118 352 286 75 41 chr5 69889405 69889551 -82647708 - MLT1B LTR MaLR -229 161 11 5 1118 291 104 0 0 chr5 69889666 69889714 -82647545 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1118 626 356 29 41 chr5 69889786 69890126 -82647133 + MT2A LTR ERVL 76 411 -122 5 1118 3435 26 0 0 chr5 69890291 69890710 -82646549 - L1Md_T LINE L1 -242 6340 5922 5 1118 604 45 23 0 chr5 69891295 69891383 -82645876 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 5 1118 234 389 37 31 chr5 69891463 69891625 -82645634 - MER76 LTR ERVL -528 163 1 5 1118 225 182 23 0 chr5 69891923 69891967 -82645292 + CT-rich Low_complexity Low_complexity 1 45 0 5 1118 3111 242 45 24 chr5 69892597 69893629 -82643630 + RMER1B Other Other 67 1336 -6 5 1118 3271 21 39 0 chr5 69894544 69894925 -82642334 - MTA_Mm LTR MaLR 0 396 1 5 1118 9175 31 3 2 chr5 69894927 69896022 -82641237 - MTA_Mm-int LTR MaLR -2 1096 1 5 1118 3271 21 39 0 chr5 69896022 69896403 -82640856 - MTA_Mm LTR MaLR 0 396 1 5 1118 2670 284 75 26 chr5 69896430 69897491 -82639768 + Lx9 LINE L1 6383 7495 -149 5 1118 1963 181 62 31 chr5 69897628 69897972 -82639287 + Lx9 LINE L1 7143 7506 -138 5 1118 318 50 0 0 chr5 69897972 69898012 -82639247 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1118 1963 181 62 31 chr5 69898012 69898153 -82639106 + Lx9 LINE L1 7507 7643 -1 5 1118 1159 238 180 41 chr5 69898211 69898627 -82638632 - RLTR33 LTR ERVK -30 648 175 5 1118 242 158 18 0 chr5 69899526 69899565 -82637694 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1118 411 21 0 0 chr5 69899565 69899613 -82637646 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1118 242 158 18 0 chr5 69899613 69899630 -82637629 + (CA)n Simple_repeat Simple_repeat 1 17 0 5 1118 367 295 68 8 chr5 69899699 69899832 -82637427 + B1F SINE Alu 1 141 -8 5 1118 258 311 108 0 chr5 69899842 69899916 -82637343 + ID4_ SINE ID 2 83 0 5 1118 312 329 90 23 chr5 69899936 69900113 -82637146 + MLT1B LTR MaLR 191 379 -11 5 1118 330 228 56 16 chr5 69901811 69901936 -82635323 + (TAGA)n Simple_repeat Simple_repeat 1 130 0 5 1118 258 32 0 0 chr5 69901962 69901993 -82635266 + (TA)n Simple_repeat Simple_repeat 2 32 0 5 1118 315 0 0 0 chr5 69901993 69902027 -82635232 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1118 194 383 11 0 chr5 69902387 69902481 -82634778 - MIRb SINE MIR -6 262 168 5 1118 437 0 19 0 chr5 69902724 69902777 -82634482 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1118 279 358 72 13 chr5 69903797 69903950 -82633309 + MIR SINE MIR 92 253 -9 5 1118 517 223 71 14 chr5 69903959 69904100 -82633159 + B1F SINE Alu 1 149 0 6 1118 2244 208 33 4 chr5 69904527 69904986 -82632273 + Lx5 LINE L1 6578 7049 -1 6 1118 261 0 0 0 chr5 69905270 69905299 -82631960 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 6 1118 532 226 31 6 chr5 69905777 69905937 -82631322 - MER5A1 DNA MER1_type -1 165 2 6 1118 259 338 117 67 chr5 69906162 69906444 -82630815 - ORR1E LTR MaLR 0 359 64 6 1118 200 322 57 73 chr5 69907472 69907596 -82629663 - L2 LINE L2 -1948 1471 1350 6 1118 237 323 21 0 chr5 69907664 69907757 -82629502 - L2 LINE L2 -2224 1195 1101 6 1118 206 211 35 0 chr5 69910782 69910839 -82626420 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1118 229 349 0 0 chr5 69911212 69911278 -82625981 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 6 1118 351 0 0 0 chr5 69911906 69911945 -82625314 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1118 21 0 0 0 chr5 69912574 69912595 -82624664 + AT_rich Low_complexity Low_complexity 1 21 0 6 1118 374 215 11 21 chr5 69913345 69913440 -82623819 - B2_Mm2 SINE B2 -100 95 2 6 1118 21 82 0 0 chr5 69914056 69914105 -82623154 + AT_rich Low_complexity Low_complexity 1 49 0 6 1118 252 59 0 0 chr5 69914194 69914228 -82623031 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 6 1118 618 125 26 19 chr5 69914289 69914444 -82622815 + (TCTA)n Simple_repeat Simple_repeat 2 157 0 6 1118 511 105 9 19 chr5 69914508 69914615 -82622644 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 6 1118 556 179 70 0 chr5 69914616 69914772 -82622487 + Lx9 LINE L1 7477 7643 -1 6 1118 22 35 0 0 chr5 69916276 69916305 -82620954 + AT_rich Low_complexity Low_complexity 1 29 0 6 1118 1092 89 0 0 chr5 69918958 69919104 -82618155 + B1_Mus1 SINE Alu 1 146 -2 6 1118 180 0 0 0 chr5 69920361 69920381 -82616878 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1118 353 136 15 0 chr5 69920777 69920843 -82616416 + (TA)n Simple_repeat Simple_repeat 2 68 0 6 1118 743 189 59 32 chr5 69920918 69921104 -82616155 - B2_Mm2 SINE B2 -4 191 1 6 1118 1004 279 53 82 chr5 69921381 69921759 -82615500 + MTEa LTR MaLR 1 367 -12 6 1118 3070 175 62 26 chr5 69921869 69922533 -82614726 + RMER6C LTR ERVK 1 688 -2 6 1118 33933 53 0 4 chr5 69922717 69928619 -82608640 + L1Md_T LINE L1 1 5589 -297 6 1118 8513 31 0 0 chr5 69928619 69929687 -82607572 + L1Md_T LINE L1 5590 6585 0 6 1118 716 311 38 35 chr5 69930005 69930292 -82606967 - B4A SINE B4 0 292 5 6 1118 258 236 28 0 chr5 69930449 69930521 -82606738 + Lx9 LINE L1 6923 6996 -648 6 1118 4610 133 11 1 chr5 69930525 69931231 -82606028 + Lx4A LINE L1 6343 7055 -3 6 1118 938 311 48 25 chr5 69931276 69931715 -82605544 + Lx9 LINE L1 6985 7433 -211 6 1118 414 0 0 0 chr5 69931761 69931807 -82605452 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1118 24 0 0 0 chr5 69932055 69932079 -82605180 + AT_rich Low_complexity Low_complexity 1 24 0 6 1118 300 27 0 0 chr5 69932787 69932824 -82604435 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1118 26 0 0 0 chr5 69932852 69932878 -82604381 + AT_rich Low_complexity Low_complexity 1 26 0 6 1118 826 295 81 8 chr5 69934433 69934679 -82602580 - B4A SINE B4 -21 271 8 6 1118 3762 58 55 4 chr5 69934989 69935477 -82601782 - L1Md_F2 LINE L1 0 6582 6070 6 1118 452 282 36 0 chr5 69935568 69935678 -82601581 - B1_Mur1 SINE Alu -33 116 3 6 1118 249 254 80 88 chr5 69935577 69935702 -82601557 - MT2B LTR ERVL -341 260 137 6 1118 2268 191 12 40 chr5 69935950 69936041 -82601218 - MTC LTR MaLR -8 413 323 6 1118 3172 51 2 5 chr5 69936041 69936436 -82600823 - MTA_Mm LTR MaLR 0 396 3 6 1118 2268 191 12 40 chr5 69936436 69936769 -82600490 - MTC LTR MaLR -99 322 1 6 1118 1869 228 33 50 chr5 69937369 69937854 -82599405 + RMER19C LTR ERVK 135 611 0 6 1118 260 277 50 0 chr5 69937960 69938061 -82599198 - L1MA5 LINE L1 0 6300 6195 6 1118 462 157 0 0 chr5 69938713 69938796 -82598463 + CT-rich Low_complexity Low_complexity 3 85 0 6 1118 2206 65 3 3 chr5 69939963 69940254 -82597005 + L1_Mus2 LINE L1 6275 6565 -1 6 1118 477 110 0 0 chr5 69940276 69940349 -82596910 + Lx7 LINE L1 6825 6897 -799 6 1118 351 121 0 0 chr5 69940351 69940409 -82596850 + (GGGA)n Simple_repeat Simple_repeat 2 59 0 6 1118 2520 212 34 4 chr5 69940409 69940963 -82596296 + Lx6 LINE L1 6879 7449 -11 6 1118 399 73 0 0 chr5 69941110 69941165 -82596094 + (T)n Simple_repeat Simple_repeat 1 55 0 6 1118 263 341 86 72 chr5 69941219 69941440 -82595819 - MLT1H1 LTR MaLR -331 224 1 6 1118 206 291 114 23 chr5 69942242 69942330 -82594929 + MIR3 SINE MIR 82 177 -31 6 1118 200 86 29 0 chr5 69943090 69943125 -82594134 + (TCC)n Simple_repeat Simple_repeat 3 38 0 6 1118 2059 221 27 10 chr5 69943246 69943652 -82593607 + MTD LTR MaLR 1 413 -6 6 1118 252 250 0 32 chr5 69944504 69944566 -82592693 + MLT1B LTR MaLR 32 91 -299 6 1118 434 80 27 0 chr5 69944575 69944650 -82592609 + (TCTCTG)n Simple_repeat Simple_repeat 6 82 0 6 1118 532 333 74 58 chr5 69944670 69944912 -82592347 + MTEa LTR MaLR 8 253 -126 6 1118 268 293 115 7 chr5 69944915 69945053 -82592206 - B3 SINE B2 -37 179 16 6 1118 599 334 257 23 chr5 69945134 69945452 -82591807 + MTE-int LTR MaLR 3 413 -1167 6 1118 1950 216 11 39 chr5 69945452 69945885 -82591374 - MTC LTR MaLR 0 421 1 6 1118 518 288 32 43 chr5 69945987 69946128 -82591131 + MTE-int LTR MaLR 542 684 -896 6 1118 1895 154 22 3 chr5 69946128 69946448 -82590811 + ORR1A4 LTR MaLR 2 327 -2 6 1118 518 288 32 43 chr5 69946448 69946491 -82590768 + MTE-int LTR MaLR 685 724 -856 6 1118 599 249 40 40 chr5 69946493 69946694 -82590565 + MTD LTR MaLR 5 205 -214 6 1118 351 264 182 48 chr5 69947477 69947664 -82589595 + RMER5 LTR ERV1 323 534 0 6 1118 393 22 0 0 chr5 69947924 69947970 -82589289 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1118 197 65 0 31 chr5 69950939 69950971 -82586288 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6 1118 268 108 0 0 chr5 69951484 69951521 -82585738 + U2 snRNA snRNA 1 37 -151 6 1118 1863 162 83 0 chr5 69951777 69952128 -82585131 - MTC LTR MaLR 0 421 42 6 1118 46 0 0 0 chr5 69953489 69953535 -82583724 + AT_rich Low_complexity Low_complexity 1 46 0 6 1118 223 191 31 31 chr5 69953765 69953830 -82583429 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 6 1118 21 0 0 0 chr5 69954493 69954514 -82582745 + AT_rich Low_complexity Low_complexity 1 21 0 6 1118 260 158 18 0 chr5 69954579 69954636 -82582623 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1118 198 0 0 0 chr5 69955164 69955186 -82582073 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1118 1174 97 40 0 chr5 69955186 69955362 -82581897 - B2_Mm2 SINE B2 -12 183 1 6 1118 566 189 0 0 chr5 69956014 69956109 -82581150 - B1_Mur2 SINE Alu -10 139 45 6 1118 340 284 231 8 chr5 69956149 69956383 -82580876 - B4A SINE B4 -6 286 1 6 1118 1137 70 0 0 chr5 69957958 69958100 -82579159 + B1_Mus1 SINE Alu 5 146 -2 6 1118 22 35 0 0 chr5 69958776 69958805 -82578454 + AT_rich Low_complexity Low_complexity 1 29 0 6 1118 365 109 16 0 chr5 69961205 69961269 -82575990 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 1118 22 0 0 0 chr5 69961478 69961500 -82575759 + AT_rich Low_complexity Low_complexity 1 22 0 6 1118 1186 54 0 0 chr5 69962123 69962270 -82574989 - B1_Mm SINE Alu 0 147 1 6 1118 324 48 0 0 chr5 69962545 69962587 -82574672 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1118 412 255 57 101 chr5 69963017 69963064 -82574195 + CYRA11_Mm Unknown Y-chromosome 129 165 -452 6 1118 1111 166 13 40 chr5 69963064 69963290 -82573969 - URR1A DNA MER1_type 0 226 7 6 1118 1101 238 127 29 chr5 69963587 69963903 -82573356 - ORR1C1 LTR MaLR -31 347 1 6 1118 235 308 0 30 chr5 69963905 69963972 -82573287 - B1F1 SINE Alu -73 76 12 6 1118 193 332 157 39 chr5 69965401 69965605 -82571654 - L2 LINE L2 -831 2588 2361 6 1118 230 266 59 50 chr5 69965649 69965768 -82571491 + MLT2B5 LTR ERVL 396 515 -40 6 1118 683 258 5 91 chr5 69965887 69966096 -82571163 - B3 SINE B2 -25 191 1 6 1118 544 300 97 19 chr5 69967603 69967861 -82569398 - B4A SINE B4 -14 278 1 6 1118 721 101 0 0 chr5 69968618 69968717 -82568542 - URR1B DNA MER1_type 0 225 127 6 1118 198 0 0 0 chr5 69968934 69968956 -82568303 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1118 486 46 0 0 chr5 69969909 69969974 -82567285 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1118 218 194 0 0 chr5 69969985 69970021 -82567238 - RSINE1 SINE B4 -71 94 59 6 1118 2005 132 35 0 chr5 69970186 69970503 -82566756 + ORR1A4 LTR MaLR 1 328 -1 6 1118 188 176 36 73 chr5 69971186 69971241 -82566018 - MIRc SINE MIR -15 253 201 6 1118 324 0 0 0 chr5 69971525 69971561 -82565698 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1118 235 316 95 54 chr5 69971578 69971725 -82565534 - MER112 DNA MER1_type -95 166 14 6 1118 320 319 59 0 chr5 69973415 69973550 -82563709 + LTR79 LTR ERVL 354 496 -31 6 1118 2595 82 24 5 chr5 69973794 69974176 -82563083 + L1_Mus3 LINE L1 6239 6627 -11 6 1118 27 0 0 0 chr5 69975088 69975115 -82562144 + AT_rich Low_complexity Low_complexity 1 27 0 6 1118 242 218 176 33 chr5 69976540 69976632 -82560627 - MIR SINE MIR -97 165 71 6 1118 1257 219 128 28 chr5 69976723 69977123 -82560136 - Lx9 LINE L1 -1 7643 7204 6 1118 218 300 14 0 chr5 69977430 69977500 -82559759 + GA-rich Low_complexity Low_complexity 1 71 0 6 1118 222 286 0 0 chr5 69977450 69977499 -82559760 + polypurine Low_complexity Low_complexity 2 50 0 6 1118 21 36 0 0 chr5 69977852 69977880 -82559379 + AT_rich Low_complexity Low_complexity 1 28 0 6 1118 238 312 97 81 chr5 69979137 69979322 -82557937 - MIRb SINE MIR -31 237 50 7 1118 255 122 0 0 chr5 69982308 69982357 -82554902 + (A)n Simple_repeat Simple_repeat 1 49 0 7 1118 651 316 46 15 chr5 69983842 69984102 -82553157 - RMER5 LTR ERV1 -26 508 241 7 1118 2375 147 58 2 chr5 69984484 69984900 -82552359 + Lx2B LINE L1 6562 7000 0 7 1118 332 297 90 42 chr5 69984929 69985073 -82552186 - LTR65 LTR ERV1 -267 402 252 7 1118 980 88 0 0 chr5 69985260 69985396 -82551863 - B1_Mm SINE Alu 0 147 12 7 1118 1891 193 56 173 chr5 69986463 69987103 -82550156 + RMER15 LTR ERVL 3 567 -8 7 1118 319 257 0 19 chr5 69987149 69987256 -82550003 - L1M4 LINE L1 -743 5435 5331 7 1118 642 215 57 36 chr5 69987309 69987449 -82549810 - B1F2 SINE Alu 0 149 7 7 1118 207 0 0 0 chr5 69987474 69987497 -82549762 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1118 1241 267 73 52 chr5 69987522 69988209 -82549050 - L1M4 LINE L1 -895 5251 4551 7 1118 432 349 149 19 chr5 69988254 69988523 -82548736 + ORR1E LTR MaLR 56 359 0 7 1118 557 242 45 34 chr5 69988527 69988789 -82548470 - L1M4 LINE L1 -1614 4529 4261 7 1118 225 0 0 0 chr5 69988913 69988938 -82548321 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 1118 1070 81 0 0 chr5 69989100 69989236 -82548023 + B1_Mus1 SINE Alu 1 136 -12 7 1118 281 346 43 5 chr5 69989254 69989463 -82547796 - L1M4 LINE L1 -2085 4061 3845 7 1118 546 232 19 47 chr5 69989807 69990004 -82547255 + MT2B LTR ERVL 1 177 -356 7 1118 24 53 0 0 chr5 69990345 69990383 -82546876 + AT_rich Low_complexity Low_complexity 1 38 0 7 1118 434 289 21 7 chr5 69990486 69990629 -82546630 + B1F SINE Alu 4 148 -1 7 1119 217 197 26 0 chr5 69992590 69992666 -82544593 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 7 1119 372 207 49 28 chr5 69992668 69992812 -82544447 + Lx9 LINE L1 7498 7644 0 7 1119 561 282 37 32 chr5 69993058 69993245 -82544014 - ID_B1 SINE B4 0 224 37 7 1119 643 324 22 15 chr5 69993854 69994127 -82543132 + B4A SINE B4 2 276 -16 7 1119 942 159 196 0 chr5 69994720 69994909 -82542350 + URR1A DNA MER1_type 1 226 0 7 1119 576 278 21 31 chr5 69996338 69996531 -82540728 - MLT1D LTR MaLR 0 505 315 7 1119 418 298 44 101 chr5 69996581 69996809 -82540450 - MLT1D LTR MaLR -412 215 1 7 1119 890 246 26 53 chr5 69997112 69997426 -82539833 - RLTR22_Mur LTR ERVK -959 363 72 7 1119 1343 286 73 38 chr5 69998118 69998762 -82538497 - L1MB8 LINE L1 -11 6167 5500 7 1119 991 234 164 19 chr5 69998762 69999128 -82538131 - MTD LTR MaLR 0 419 1 7 1119 616 30 70 0 chr5 70000130 70000230 -82537029 + L1Md_F3 LINE L1 6476 6582 -2 1 1119 1636 213 97 29 chr5 70000561 70001053 -82536206 + RLTR20B1 LTR ERVK 1 529 -12 2 1119 721 52 21 0 chr5 70001967 70002063 -82535196 - B1_Mus2 SINE Alu 0 147 50 3 1119 185 0 40 0 chr5 70002439 70002464 -82534795 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1119 242 305 21 21 chr5 70002495 70002592 -82534667 + LTR59 LTR ERV1 225 321 -276 5 1119 366 121 340 66 chr5 70002565 70002671 -82534588 - B2_Mm2 SINE B2 -14 181 47 6 1119 944 118 7 0 chr5 70002694 70002830 -82534429 - B2_Mm1t SINE B2 -56 137 1 7 1119 227 219 78 0 chr5 70002971 70003035 -82534224 + Lx8 LINE L1 7283 7351 -122 8 1119 866 220 13 56 chr5 70003041 70003279 -82533980 - RLTR20B2 LTR ERVK -38 539 303 9 1119 229 269 0 70 chr5 70003281 70003381 -82533878 + Lx8 LINE L1 7373 7465 -8 8 1119 226 244 0 0 chr5 70003575 70003620 -82533639 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1119 832 183 200 0 chr5 70004052 70004227 -82533032 - B3 SINE B2 -6 210 1 1 1119 903 262 27 11 chr5 70005382 70005674 -82531585 - L1_Mur3 LINE L1 -518 5826 5493 1 1119 1352 146 0 0 chr5 70005691 70005903 -82531356 - RMER6C LTR ERVK 0 690 479 1 1119 1260 56 0 0 chr5 70005903 70006064 -82531195 + (TTC)n Simple_repeat Simple_repeat 2 162 0 1 1119 3902 32 0 17 chr5 70006071 70006544 -82530715 - L1Md_F2 LINE L1 -13 6569 6105 1 1119 2901 48 24 11 chr5 70006544 70006919 -82530340 + L1Md_F2 LINE L1 5737 6116 -466 1 1119 1707 166 90 154 chr5 70006919 70007069 -82530190 - RMER6C LTR ERVK -190 500 347 1 1119 605 69 0 11 chr5 70007069 70007157 -82530102 + (TTC)n Simple_repeat Simple_repeat 3 89 0 1 1119 1707 166 90 154 chr5 70007157 70007540 -82529719 - RMER6C LTR ERVK -344 346 1 1 1119 2906 220 51 57 chr5 70007541 70008398 -82528861 - L1_Mur3 LINE L1 -400 5480 4629 1 1119 491 340 34 29 chr5 70009225 70009431 -82527828 + RMER15 LTR ERVL 353 559 -16 1 1119 210 71 0 0 chr5 70009622 70009650 -82527609 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1119 282 184 0 0 chr5 70009714 70009763 -82527496 + MTD LTR MaLR 3 51 -368 1 1119 412 338 32 60 chr5 70010144 70010396 -82526863 + L1M4b LINE L1 3410 3654 -3680 2 1119 900 252 55 8 chr5 70010555 70010791 -82526468 + MTD LTR MaLR 68 314 -105 1 1119 341 186 35 0 chr5 70010864 70010950 -82526309 - RMER1B Other Other -2 1064 976 2 1119 276 262 23 35 chr5 70010965 70011052 -82526207 - RMER1B Other Other -163 903 818 2 1119 486 0 0 0 chr5 70012566 70012620 -82524639 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1119 288 0 0 0 chr5 70012806 70012838 -82524421 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1119 528 65 0 0 chr5 70012838 70012915 -82524344 + (CAGAGA)n Simple_repeat Simple_repeat 6 82 0 2 1119 358 290 138 25 chr5 70012929 70013212 -82524047 - L1MB4 LINE L1 -64 6116 5802 2 1119 215 114 0 22 chr5 70013555 70013600 -82523659 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 2 1119 21 0 0 0 chr5 70013692 70013713 -82523546 + AT_rich Low_complexity Low_complexity 1 21 0 2 1119 279 0 0 0 chr5 70014368 70014399 -82522860 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1119 198 0 0 0 chr5 70014400 70014422 -82522837 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 1119 920 262 21 11 chr5 70014422 70014611 -82522648 - B3 SINE B2 -24 192 2 3 1119 23 0 0 0 chr5 70014653 70014676 -82522583 + AT_rich Low_complexity Low_complexity 1 23 0 3 1119 1027 243 128 35 chr5 70014990 70015336 -82521923 + MTD LTR MaLR 7 405 -14 3 1119 294 261 33 22 chr5 70016088 70016178 -82521081 + MLT2B1 LTR ERVL 469 559 -8 3 1119 488 238 91 15 chr5 70016695 70016827 -82520432 - B1_Mur1 SINE Alu -7 142 1 3 1119 482 393 21 49 chr5 70016915 70017303 -82519956 - LTR40a LTR ERVL -16 503 127 3 1119 504 0 0 0 chr5 70018238 70018294 -82518965 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1119 1552 297 40 19 chr5 70018355 70018855 -82518404 - Lx5 LINE L1 -18 7032 6535 3 1119 21 0 0 0 chr5 70019302 70019323 -82517936 + AT_rich Low_complexity Low_complexity 1 21 0 3 1119 396 0 0 0 chr5 70019323 70019367 -82517892 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 3 1119 871 75 0 0 chr5 70019369 70019489 -82517770 - B1_Mm SINE Alu -6 141 22 4 1119 239 289 163 80 chr5 70019609 70019898 -82517361 - L1M4 LINE L1 -5794 748 436 4 1119 252 0 0 0 chr5 70020155 70020183 -82517076 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1119 307 289 8 8 chr5 70020403 70020525 -82516734 - L1M4 LINE L1 -6365 177 56 4 1119 979 95 6 70 chr5 70021736 70021894 -82515365 + B1_Mus1 SINE Alu 1 148 0 4 1119 319 85 33 17 chr5 70021894 70021954 -82515305 + (GAAAA)n Simple_repeat Simple_repeat 3 63 0 4 1119 4385 129 3 1 chr5 70023011 70023664 -82513595 - Lx LINE L1 -12 6642 5989 4 1119 554 290 41 17 chr5 70025073 70025245 -82512014 - Lx9 LINE L1 -254 7390 7215 4 1119 1278 210 128 17 chr5 70025246 70025599 -82511660 + Lx9 LINE L1 6815 7206 -438 4 1119 526 299 68 29 chr5 70026558 70026765 -82510494 - B3A SINE B2 0 216 2 4 1119 336 331 148 40 chr5 70027050 70027954 -82509305 - L1ME3A LINE L1 -238 5935 4909 4 1119 1237 77 18 6 chr5 70028001 70028170 -82509089 + Lx3_Mus LINE L1 5705 5875 -1134 4 1119 4639 56 18 0 chr5 70028170 70028773 -82508486 + Lx3_Mus LINE L1 6396 7009 0 4 1119 21 36 0 0 chr5 70029090 70029118 -82508141 + AT_rich Low_complexity Low_complexity 1 28 0 5 1119 391 344 104 0 chr5 70029364 70029518 -82507741 + B4 SINE B4 3 172 -120 5 1119 387 0 0 0 chr5 70029663 70029706 -82507553 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1119 2210 44 3 119 chr5 70029753 70030115 -82507144 + RLTR10 LTR ERVK 1 320 -70 5 1119 933 89 29 24 chr5 70030167 70030326 -82506933 + RLTR10 LTR ERVK 249 411 0 5 1119 14718 32 51 31 chr5 70030336 70032244 -82505015 + RLTR10-int LTR ERVK 41 1986 -1 5 1119 2210 44 3 119 chr5 70032244 70032606 -82504653 + RLTR10 LTR ERVK 1 320 -70 5 1119 933 89 29 24 chr5 70032658 70032817 -82504442 + RLTR10 LTR ERVK 249 411 0 5 1119 576 305 200 20 chr5 70032976 70033529 -82503730 - L1MC3 LINE L1 -159 7626 6975 5 1119 225 337 104 10 chr5 70033600 70033696 -82503563 - RSINE1 SINE B4 -52 113 9 5 1119 690 299 142 36 chr5 70033881 70034211 -82503048 - MLT1A0 LTR MaLR 0 365 1 5 1119 8191 39 8 0 chr5 70034270 70035439 -82501820 - L1Md_F2 LINE L1 -3 6579 5403 5 1119 1273 146 75 4 chr5 70035628 70035855 -82501404 + Lx2 LINE L1 6741 6983 -14 6 1119 311 274 108 46 chr5 70037227 70037386 -82499873 - MLT1C LTR MaLR -219 171 6 6 1119 215 135 79 26 chr5 70037783 70037859 -82499400 + (TTATA)n Simple_repeat Simple_repeat 5 84 0 6 1119 28 0 0 0 chr5 70037901 70037929 -82499330 + AT_rich Low_complexity Low_complexity 1 28 0 6 1119 192 97 0 0 chr5 70037939 70037970 -82499289 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1119 460 280 37 84 chr5 70037973 70038164 -82499095 - B3A SINE B2 -16 182 1 6 1119 579 29 0 0 chr5 70038165 70038234 -82499025 + (TG)n Simple_repeat Simple_repeat 1 69 0 6 1119 405 0 0 0 chr5 70038234 70038278 -82498981 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1119 334 333 104 0 chr5 70038841 70038976 -82498283 - MLT1A0 LTR MaLR -171 194 46 6 1119 719 300 38 10 chr5 70038982 70039256 -82498003 + ORR1E LTR MaLR 6 379 0 6 1119 752 305 109 122 chr5 70039306 70039940 -82497319 - MLT-int LTR MaLR -2 1733 1108 7 1119 228 296 122 22 chr5 70039974 70040064 -82497195 - MLT-int LTR MaLR -588 1147 1049 7 1119 287 306 67 67 chr5 70040077 70040182 -82497077 - MLT-int LTR MaLR -969 766 662 7 1119 561 312 81 8 chr5 70040206 70040464 -82496795 - MLT-int LTR MaLR -1237 498 222 7 1119 245 304 88 42 chr5 70041694 70041979 -82495280 - HAL1 LINE L1 -872 1635 1338 7 1119 537 16 0 0 chr5 70042332 70042394 -82494865 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1119 251 363 39 31 chr5 70042395 70042523 -82494736 - B1F SINE Alu -20 129 1 7 1119 200 114 0 28 chr5 70042574 70042610 -82494649 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 7 1119 818 276 68 8 chr5 70042663 70042911 -82494348 - Lx9 LINE L1 -320 7324 7062 7 1119 29 78 0 0 chr5 70042914 70042978 -82494281 + AT_rich Low_complexity Low_complexity 1 64 0 7 1119 252 0 0 0 chr5 70044785 70044813 -82492446 + (TC)n Simple_repeat Simple_repeat 2 29 0 7 1119 275 72 0 23 chr5 70044813 70044855 -82492404 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1119 643 234 30 97 chr5 70044912 70045412 -82491847 + RMER17C LTR ERVK 1 378 -32 7 1119 1118 75 0 20 chr5 70046999 70047148 -82490111 + B1_Mm SINE Alu 2 147 0 8 1119 195 42 0 0 chr5 70047148 70047172 -82490087 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1119 930 78 0 0 chr5 70047794 70047922 -82489337 + (TAGA)n Simple_repeat Simple_repeat 2 129 0 8 1119 876 89 0 0 chr5 70048442 70048565 -82488694 + (TTTC)n Simple_repeat Simple_repeat 3 125 0 8 1119 3877 71 20 13 chr5 70048567 70049108 -82488151 - L1Md_F2 LINE L1 -5 6577 6033 8 1119 351 0 0 0 chr5 70050572 70050611 -82486648 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1119 202 216 0 0 chr5 70051435 70051472 -82485787 + CT-rich Low_complexity Low_complexity 4 40 0 8 1119 7140 185 25 16 chr5 70051651 70053704 -82483555 + Lx5 LINE L1 4976 7045 -5 8 1119 654 268 0 17 chr5 70054253 70054428 -82482831 - Lx9 LINE L1 -371 7273 7102 8 1119 1192 61 0 0 chr5 70054558 70054705 -82482554 + B1_Mus2 SINE Alu 1 147 0 8 1119 479 342 35 5 chr5 70055332 70055518 -82481741 - MLT1F LTR MaLR -360 195 1 9 1119 718 218 83 1 chr5 70055601 70055781 -82481478 - Lx7 LINE L1 -336 5848 5617 9 1119 2003 194 30 8 chr5 70055975 70056369 -82480890 - MTC LTR MaLR -18 403 1 9 1119 224 59 29 0 chr5 70056545 70056579 -82480680 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 9 1119 231 279 44 0 chr5 70057269 70057337 -82479922 + PB1D7 SINE Alu 37 107 -13 9 1119 318 126 22 33 chr5 70057534 70057624 -82479635 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 9 1119 261 176 44 0 chr5 70058240 70058308 -82478951 + (TTATA)n Simple_repeat Simple_repeat 4 74 0 9 1119 396 234 0 0 chr5 70058446 70058523 -82478736 + PB1 SINE Alu 45 121 -6 9 1119 195 42 0 0 chr5 70058744 70058768 -82478491 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1119 1121 82 0 7 chr5 70058768 70058916 -82478343 - B1_Mm SINE Alu 0 147 1 9 1119 227 256 35 47 chr5 70060253 70060339 -82476920 - MIRb SINE MIR -74 194 110 1 1119 7689 38 15 0 chr5 70061233 70062167 -82475092 + L1Md_F2 LINE L1 5635 6582 0 1 1119 229 330 10 60 chr5 70062713 70062813 -82474446 + MIR SINE MIR 3 97 -165 1 1119 25 51 0 0 chr5 70063600 70063639 -82473620 + AT_rich Low_complexity Low_complexity 1 39 0 1 1119 271 361 40 40 chr5 70063935 70064059 -82473200 - B1F SINE Alu -4 145 22 1 1119 363 105 0 0 chr5 70064092 70064149 -82473110 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1119 833 316 41 11 chr5 70064151 70064420 -82472839 - B4 SINE B4 -8 284 8 1 1119 238 319 11 11 chr5 70064524 70064616 -82472643 - L1MEf LINE L1 -2001 4318 4227 1 1119 331 310 142 43 chr5 70064622 70064925 -82472334 - L1MEf LINE L1 -4971 1444 1112 1 1119 544 217 57 16 chr5 70065044 70065166 -82472093 - Lx7 LINE L1 -698 6998 6872 1 1119 820 200 23 38 chr5 70065735 70065955 -82471304 + LTRIS3 LTR ERV1 251 512 0 1 1119 253 331 0 0 chr5 70066181 70066305 -82470954 + T-rich Low_complexity Low_complexity 1 124 0 1 1119 236 322 50 8 chr5 70066630 70066749 -82470510 - L1MEf LINE L1 -5909 491 368 1 1119 633 27 0 0 chr5 70066824 70066899 -82470360 + (TTCTC)n Simple_repeat Simple_repeat 3 77 0 1 1119 214 136 45 0 chr5 70066899 70066943 -82470316 + CT-rich Low_complexity Low_complexity 4 49 0 1 1119 2910 41 0 3 chr5 70067089 70067435 -82469824 + IAPLTR4 LTR ERVK 1 345 0 1 1119 26 93 0 0 chr5 70067437 70067512 -82469747 + AT_rich Low_complexity Low_complexity 1 75 0 1 1119 1706 106 16 85 chr5 70067522 70067841 -82469418 - Lx3A LINE L1 -1 6980 6684 1 1119 396 143 44 0 chr5 70067896 70067987 -82469272 + Lx9 LINE L1 7533 7627 -17 1 1119 446 276 106 4 chr5 70068007 70068244 -82469015 - L1M2 LINE L1 -3225 2918 2658 1 1119 286 311 9 19 chr5 70068664 70068772 -82468487 + ID_B1 SINE B4 118 224 0 1 1119 439 110 0 12 chr5 70069214 70069297 -82467962 - L1Md_F2 LINE L1 0 6582 6501 1 1119 334 300 83 28 chr5 70069324 70069468 -82467791 - RSINE1 SINE B4 0 165 14 1 1119 816 255 31 0 chr5 70070791 70070987 -82466272 - B3 SINE B2 -10 206 5 1 1119 408 20 0 0 chr5 70072038 70072087 -82465172 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1119 770 0 11 0 chr5 70072681 70072771 -82464488 + (GAA)n Simple_repeat Simple_repeat 3 93 0 1 1119 712 107 186 12 chr5 70074607 70074768 -82462491 + Lx3A LINE L1 6793 6981 0 1 1119 375 329 146 28 chr5 70074792 70075183 -82462076 + L1MD2 LINE L1 5780 6216 -143 1 1119 201 125 24 24 chr5 70075401 70075442 -82461817 + A-rich Low_complexity Low_complexity 5 45 0 1 1119 258 281 44 22 chr5 70076195 70076286 -82460973 + PB1D10 SINE Alu 25 117 0 1 1119 220 275 0 42 chr5 70077957 70078029 -82459230 + (TATG)n Simple_repeat Simple_repeat 2 70 0 1 1119 305 24 24 0 chr5 70079655 70079697 -82457562 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1119 576 29 0 0 chr5 70079697 70079766 -82457493 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1119 3104 63 55 11 chr5 70082187 70082622 -82454637 - L1_Mus4 LINE L1 0 6636 6183 1 1119 1290 68 0 0 chr5 70083200 70083439 -82453820 + (CA)n Simple_repeat Simple_repeat 1 239 0 1 1119 538 315 18 18 chr5 70084360 70084407 -82452852 + L1MC LINE L1 5598 5640 -2242 1 1119 3717 92 20 2 chr5 70084407 70084949 -82452310 - L1_Mus3 LINE L1 -7 6631 6080 1 1119 3553 74 136 0 chr5 70084949 70085482 -82451777 + L1_Mus4 LINE L1 5616 6567 0 1 1119 1393 94 36 0 chr5 70086234 70086457 -82450802 + L1_Mus3 LINE L1 6408 6638 0 1 1119 1271 249 131 50 chr5 70086640 70087021 -82450238 - MTD LTR MaLR -3 416 5 1 1119 335 248 8 0 chr5 70087377 70087498 -82449761 + CT-rich Low_complexity Low_complexity 3 124 0 1 1119 2267 129 14 3 chr5 70088000 70088366 -82448893 - L1_Mur2 LINE L1 -1613 4264 3895 1 1119 1162 188 0 0 chr5 70088366 70088558 -82448701 + Lx2B LINE L1 6455 6646 -354 1 1119 2790 47 7 114 chr5 70088563 70089000 -82448259 + RLTR10 LTR ERVK 1 390 0 1 1119 16805 25 3 5 chr5 70089000 70090960 -82446299 + RLTR10-int LTR ERVK 1 1986 -1 1 1119 2842 41 7 110 chr5 70090960 70091395 -82445864 + RLTR10 LTR ERVK 1 390 0 1 1119 925 242 106 56 chr5 70091407 70091775 -82445484 + Lx2B LINE L1 6303 6958 -42 1 1119 8006 37 9 13 chr5 70091792 70092863 -82444396 - L1Md_F3 LINE L1 -3 6581 5513 1 1119 194 258 61 51 chr5 70092946 70093044 -82444215 - L3 LINE CR1 -317 4172 4074 1 1119 632 276 38 14 chr5 70093452 70093629 -82443630 - Lx6 LINE L1 -52 7408 7254 1 1119 1138 192 5 5 chr5 70093864 70094084 -82443175 - URR1B DNA MER1_type -2 223 4 1 1119 180 0 0 0 chr5 70094150 70094170 -82443089 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1119 2449 202 55 96 chr5 70094793 70095428 -82441831 + RMER19C LTR ERVK 3 611 0 1 1119 242 269 62 20 chr5 70096975 70097084 -82440175 + Lx7 LINE L1 5586 5698 -182 1 1119 256 308 87 101 chr5 70097701 70098069 -82439190 + L1_Rod LINE L1 5478 5840 -7 1 1119 1833 213 90 17 chr5 70099254 70099665 -82437594 - Lx5 LINE L1 -9 7041 6601 1 1119 441 0 0 0 chr5 70099817 70099866 -82437393 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1119 267 310 189 5 chr5 70099911 70100112 -82437147 + Charlie8 DNA MER1_type 24 261 -2167 1 1119 2362 115 29 27 chr5 70100571 70100947 -82436312 + L1_Mus3 LINE L1 6262 6638 0 1 1119 1572 60 0 0 chr5 70101201 70101401 -82435858 - L1_Mus1 LINE L1 0 6567 6368 1 1119 630 60 0 0 chr5 70101489 70101572 -82435687 + (TATG)n Simple_repeat Simple_repeat 4 86 0 1 1119 1276 196 41 57 chr5 70101774 70101816 -82435443 - MT2B LTR ERVL -8 593 544 1 1119 563 0 15 0 chr5 70101816 70101883 -82435376 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 1 1119 1276 196 41 57 chr5 70101883 70102154 -82435105 - MT2B LTR ERVL -58 543 285 1 1119 323 316 0 21 chr5 70102160 70102263 -82434996 - RMER1B Other Other -639 427 363 1 1119 6798 175 38 9 chr5 70102458 70103735 -82433524 + Lx3C LINE L1 5651 6964 -12 1 1119 267 79 0 0 chr5 70103735 70103773 -82433486 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1119 189 314 34 23 chr5 70103863 70103951 -82433308 + L3 LINE CR1 3821 3909 -580 1 1119 441 317 75 21 chr5 70103971 70104158 -82433101 + MER117 DNA MER1_type 1 197 0 1 1119 182 37 37 0 chr5 70104480 70104507 -82432752 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1 1119 233 387 53 19 chr5 70104545 70104753 -82432506 + MER20 DNA MER1_type 1 215 -4 1 1119 7996 41 5 0 chr5 70105030 70105996 -82431263 - L1Md_F2 LINE L1 -12 6570 5600 1 1119 381 22 0 0 chr5 70106780 70106826 -82430433 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1119 378 0 0 0 chr5 70106839 70106881 -82430378 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1119 22 56 0 0 chr5 70108396 70108432 -82428827 + AT_rich Low_complexity Low_complexity 1 36 0 1 1119 219 325 0 24 chr5 70108454 70108539 -82428720 - MIRc SINE MIR -55 213 131 1 1119 222 368 8 46 chr5 70108761 70108892 -82428367 + RSINE1 SINE B4 34 159 -6 1 1119 1685 242 34 29 chr5 70109863 70110275 -82426984 + MTC LTR MaLR 8 421 0 1 1119 444 82 0 0 chr5 70110728 70110789 -82426470 + (TTA)n Simple_repeat Simple_repeat 3 63 0 1 1119 182 128 26 0 chr5 70111078 70111117 -82426142 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 1119 3744 65 0 10 chr5 70111273 70111767 -82425492 + L1Md_F2 LINE L1 6093 6581 -1 1 1119 330 309 0 0 chr5 70111839 70111923 -82425336 - B4A SINE B4 -208 84 1 1 1119 584 316 94 42 chr5 70111964 70112506 -82424753 - L1_Mur3 LINE L1 -197 5683 5114 1 1119 4694 168 51 28 chr5 70112520 70113383 -82423876 - RMER19B LTR ERVK -11 891 9 1 1119 269 312 0 9 chr5 70113478 70113588 -82423671 - L1M2 LINE L1 -1837 4306 4198 1 1119 790 318 90 51 chr5 70113816 70113880 -82423379 - MTE2b LTR MaLR -1 378 318 1 1119 1029 71 35 7 chr5 70113880 70114022 -82423237 + B1_Mus2 SINE Alu 2 147 0 1 1119 790 318 90 51 chr5 70114022 70114289 -82422970 - MTE2b LTR MaLR -62 317 34 1 1119 567 0 0 0 chr5 70114457 70114520 -82422739 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1119 396 0 0 0 chr5 70114521 70114565 -82422694 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1119 332 364 36 0 chr5 70114569 70114679 -82422580 - B3 SINE B2 -52 164 51 1 1119 261 299 60 0 chr5 70114767 70114901 -82422358 - L1M2 LINE L1 -2989 3154 3013 1 1119 22 0 0 0 chr5 70115993 70116015 -82421244 + AT_rich Low_complexity Low_complexity 1 22 0 1 1119 678 157 0 0 chr5 70116015 70116136 -82421123 + (CA)n Simple_repeat Simple_repeat 2 122 0 1 1119 561 211 101 0 chr5 70116452 70116670 -82420589 + Lx9 LINE L1 7403 7642 -2 1 1119 24736 25 2 0 chr5 70116747 70120368 -82416891 - L1Md_T LINE L1 -1 6581 2953 1 139 31604 37 0 0 chr5 70120363 70125010 -82412249 - L1Md_Gf LINE L1 -733 5153 409 1 1120 2071 8 0 0 chr5 70125010 70125246 -82412013 + L1Md_T LINE L1 6347 6582 0 1 1120 14597 29 0 15 chr5 70125263 70127680 -82409579 - L1Md_T LINE L1 -2919 2964 591 1 1120 227 243 0 0 chr5 70127680 70127750 -82409509 - LTR37A LTR ERV1 -276 150 81 1 1120 2153 242 47 2 chr5 70127784 70128272 -82408987 + Lx6 LINE L1 6936 7445 -15 1 1120 441 0 0 0 chr5 70128285 70128334 -82408925 + (TAA)n Simple_repeat Simple_repeat 2 50 0 1 1120 834 90 0 0 chr5 70128786 70128920 -82408339 + (TC)n Simple_repeat Simple_repeat 2 135 0 1 1120 297 0 0 0 chr5 70128920 70128952 -82408307 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1120 389 304 39 0 chr5 70128960 70129075 -82408184 - B1F1 SINE Alu -28 121 3 1 1120 25 31 0 0 chr5 70129664 70129696 -82407563 + AT_rich Low_complexity Low_complexity 1 32 0 1 1120 5581 127 39 12 chr5 70129696 70130666 -82406593 - Lx3C LINE L1 -8 6968 5973 1 1120 695 278 132 50 chr5 70131328 70131646 -82405613 + ORR1E LTR MaLR 27 370 0 1 1120 243 0 0 0 chr5 70132110 70132137 -82405122 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 2 1120 474 252 0 0 chr5 70132160 70132259 -82405000 - B1_Mur2 SINE Alu -12 137 39 2 1120 210 37 0 0 chr5 70132261 70132288 -82404971 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1120 731 88 274 0 chr5 70132288 70132401 -82404858 - B1_Mm SINE Alu -3 144 1 2 1120 4638 102 32 9 chr5 70132422 70133107 -82404152 - L1_Mus3 LINE L1 -6 6632 5932 2 1120 831 10 0 0 chr5 70133332 70133428 -82403831 + (CA)n Simple_repeat Simple_repeat 2 97 0 2 1120 255 336 35 49 chr5 70133496 70133640 -82403619 + MLT1D LTR MaLR 1 142 -485 2 1120 327 352 82 0 chr5 70133696 70133818 -82403441 + MLT1D LTR MaLR 281 412 -93 2 1120 279 0 0 0 chr5 70133978 70134009 -82403250 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2 1120 351 281 89 89 chr5 70134034 70134214 -82403045 - B3A SINE B2 -16 182 3 2 1120 247 312 0 49 chr5 70134709 70134790 -82402469 - ID2 SINE ID 0 83 7 2 1120 23 33 0 0 chr5 70135759 70135789 -82401470 + AT_rich Low_complexity Low_complexity 1 30 0 2 1120 582 105 0 0 chr5 70136032 70136137 -82401122 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 2 1120 22 0 0 0 chr5 70137059 70137081 -82400178 + AT_rich Low_complexity Low_complexity 1 22 0 2 1120 651 309 72 30 chr5 70137521 70137855 -82399404 - MLT1A0 LTR MaLR -6 359 12 2 1120 302 123 18 0 chr5 70138093 70138150 -82399109 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1120 313 243 8 93 chr5 70138590 70138708 -82398551 + RMER30 DNA MER1_type 8 115 -87 2 1120 349 315 87 32 chr5 70138718 70139121 -82398138 - L1MC LINE L1 -1357 4789 4365 2 1120 26962 82 4 2 chr5 70139194 70143643 -82393616 - L1Md_F2 LINE L1 0 6582 2122 2 1120 187 380 32 24 chr5 70144018 70144142 -82393117 - L2a LINE L2 -13 3413 3289 2 1120 244 293 110 17 chr5 70145765 70145883 -82391376 + L1MA6 LINE L1 6142 6270 -30 2 1120 701 351 29 11 chr5 70145901 70146180 -82391079 + B4A SINE B4 6 289 -3 2 1120 234 167 49 16 chr5 70146186 70146247 -82391012 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1120 26 0 0 0 chr5 70146327 70146353 -82390906 + AT_rich Low_complexity Low_complexity 1 26 0 2 1120 37 52 0 0 chr5 70147050 70147108 -82390151 + AT_rich Low_complexity Low_complexity 1 58 0 2 1120 224 137 20 0 chr5 70147148 70147199 -82390060 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1120 2689 182 2 47 chr5 70148059 70148590 -82388669 - RLTR28 LTR ERVL -14 510 4 2 1120 754 300 18 18 chr5 70148892 70149167 -82388092 - Lx7 LINE L1 -478 7218 6944 2 1120 294 318 0 26 chr5 70149157 70149270 -82387989 + Lx7 LINE L1 7207 7316 -380 2 1120 408 67 0 0 chr5 70149289 70149349 -82387910 + (TCTG)n Simple_repeat Simple_repeat 3 62 0 2 1120 885 303 186 14 chr5 70149473 70149969 -82387290 + Lx8 LINE L1 6823 7403 -70 2 1120 486 0 0 0 chr5 70150048 70150102 -82387157 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1120 180 0 0 0 chr5 70150102 70150121 -82387138 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1120 378 152 0 0 chr5 70150121 70150213 -82387046 + GA-rich Low_complexity Low_complexity 1 92 0 2 1120 23 0 0 0 chr5 70150219 70150242 -82387017 + AT_rich Low_complexity Low_complexity 1 23 0 2 1120 489 283 133 20 chr5 70150628 70150823 -82386436 + RMER15 LTR ERVL 339 555 -20 2 1120 306 0 0 0 chr5 70151252 70151286 -82385973 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1120 260 299 67 17 chr5 70151387 70151506 -82385753 - MIR SINE MIR -46 216 92 2 1120 400 78 0 0 chr5 70152816 70152867 -82384392 + L1_Mus1 LINE L1 5974 6024 -543 2 1120 313 26 0 0 chr5 70152867 70152906 -82384353 + L1_Mus2 LINE L1 6514 6552 -14 2 1120 7371 52 9 1 chr5 70152905 70153840 -82383419 + L1Md_F3 LINE L1 5642 6583 -1 2 1120 613 325 91 57 chr5 70154820 70155179 -82382080 - MLT2B1 LTR ERVL -21 499 143 2 1120 870 10 0 0 chr5 70155179 70155278 -82381981 + (TTCTC)n Simple_repeat Simple_repeat 2 100 0 2 1120 613 325 91 57 chr5 70155278 70155371 -82381888 - MLT2B1 LTR ERVL -378 142 32 2 1120 5597 94 94 0 chr5 70155371 70156181 -82381078 - L1_Mus3 LINE L1 -165 6473 5588 2 1120 625 92 0 0 chr5 70156201 70156288 -82380971 - L1_Mus3 LINE L1 -464 5419 5333 2 1120 780 266 5 52 chr5 70156640 70156850 -82380409 - B3 SINE B2 -15 201 2 2 1120 207 0 0 0 chr5 70156884 70156907 -82380352 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1120 219 246 15 30 chr5 70157120 70157187 -82380072 + (TATG)n Simple_repeat Simple_repeat 4 69 0 2 1120 233 369 25 83 chr5 70158068 70158189 -82379070 + PB1D10 SINE Alu 1 114 -3 2 1120 5764 143 28 4 chr5 70158215 70159407 -82377852 - Lx2A1 LINE L1 -995 6013 4796 2 1120 5694 152 37 7 chr5 70159408 70160358 -82376901 + Lx2A1 LINE L1 6016 6993 -15 2 1120 4306 24 2 0 chr5 70163050 70163542 -82373717 + MT2_Mm LTR ERVL 1 493 0 2 1120 39855 13 6 0 chr5 70163542 70168868 -82368391 + MERVL-int LTR ERVL 1 5360 -125 2 1120 392 167 46 35 chr5 70168868 70168955 -82368304 + ORR1A3-int LTR MaLR 553 640 -1323 2 1120 314 0 0 0 chr5 70168955 70168993 -82368266 + MERVL-int LTR ERVL 5448 5485 0 2 1120 4306 24 2 0 chr5 70168993 70169485 -82367774 + MT2_Mm LTR ERVL 1 493 0 2 1120 1126 70 7 0 chr5 70169556 70169699 -82367560 - B1_Mus2 SINE Alu -2 145 2 2 1120 300 325 15 45 chr5 70169801 70169933 -82367326 + RSINE1 SINE B4 2 129 -36 2 1120 1125 236 56 38 chr5 70170752 70171089 -82366170 - RMER19C LTR ERVK 0 902 364 2 1120 3422 66 0 11 chr5 70171113 70171556 -82365703 + L1_Mus1 LINE L1 6123 6560 -7 2 1120 651 202 122 26 chr5 70171799 70172028 -82365231 - Lx9 LINE L1 -13 7631 7381 2 1120 1744 216 37 90 chr5 70172032 70172541 -82364718 + RLTR20B3 LTR ERVK 1 482 -95 2 1120 357 123 0 0 chr5 70172542 70172607 -82364652 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 2 1120 946 100 0 7 chr5 70172677 70172818 -82364441 - B1_Mus1 SINE Alu -2 146 7 2 1120 1090 273 0 15 chr5 70172850 70173114 -82364145 - Lx9 LINE L1 -262 7382 7123 2 1120 1283 231 61 51 chr5 70174224 70174415 -82362844 + L1_Rod LINE L1 2553 2755 -3092 2 1120 872 92 15 0 chr5 70174415 70174546 -82362713 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 2 1120 1283 231 61 51 chr5 70174546 70174828 -82362431 + L1_Rod LINE L1 2756 3031 -2816 2 1120 392 326 0 0 chr5 70176465 70176563 -82360696 - B1F SINE Alu -51 98 1 2 1120 551 15 15 0 chr5 70177819 70177887 -82359372 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 2 1120 1029 112 0 75 chr5 70177887 70178061 -82359198 - B2_Mm2 SINE B2 -34 161 1 2 1120 280 248 66 9 chr5 70178084 70178190 -82359069 - Lx5 LINE L1 0 7050 6939 2 1120 3688 166 25 10 chr5 70178185 70178856 -82358403 - L1_Mur2 LINE L1 -106 5771 5091 2 1120 271 313 0 0 chr5 70178857 70178924 -82358335 + B4A SINE B4 226 292 0 2 1120 25 31 0 0 chr5 70178959 70178991 -82358268 + AT_rich Low_complexity Low_complexity 1 32 0 2 1120 260 301 35 35 chr5 70179905 70179991 -82357268 + B1F SINE Alu 3 88 -32 2 1120 348 228 0 25 chr5 70180153 70180234 -82357025 - Lx9 LINE L1 -630 7014 6936 2 1120 697 261 4 102 chr5 70181113 70181248 -82356011 - RMER5 LTR ERV1 -13 521 390 2 1120 409 163 43 11 chr5 70181248 70181341 -82355918 + Lx3C LINE L1 6881 6976 0 2 1120 697 261 4 102 chr5 70181341 70181440 -82355819 - RMER5 LTR ERV1 -145 389 310 2 1120 867 197 63 81 chr5 70181445 70181666 -82355593 + URR1B DNA MER1_type 9 225 0 2 1120 360 328 112 49 chr5 70181676 70181961 -82355298 - RMER5 LTR ERV1 -230 304 2 2 1120 998 214 73 46 chr5 70182572 70182751 -82354508 + Lx4B LINE L1 6758 6928 -130 2 1120 302 0 26 0 chr5 70182751 70182789 -82354470 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1120 951 117 0 0 chr5 70182789 70182968 -82354291 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1120 998 214 73 46 chr5 70182968 70183046 -82354213 + Lx4B LINE L1 6929 7022 -36 2 1120 285 224 75 63 chr5 70183046 70183175 -82354084 + Lx5 LINE L1 6925 7052 -6 2 1120 23 0 0 0 chr5 70183432 70183455 -82353804 + AT_rich Low_complexity Low_complexity 1 23 0 2 1120 725 269 62 0 chr5 70184069 70184262 -82352997 + B3 SINE B2 7 211 -5 2 1120 408 311 32 48 chr5 70184402 70184527 -82352732 - Lx5 LINE L1 -74 6984 6839 2 1120 432 0 0 0 chr5 70184584 70184632 -82352627 + (TTA)n Simple_repeat Simple_repeat 1 48 0 2 1120 1249 117 63 0 chr5 70184688 70184894 -82352365 - L1_Mus3 LINE L1 -1 6637 6419 2 1120 1238 78 0 0 chr5 70184894 70185060 -82352199 + L1_Mus3 LINE L1 6251 6416 -222 2 1120 420 20 0 0 chr5 70186448 70186497 -82350762 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1120 369 103 77 0 chr5 70187144 70187261 -82349998 + (TCTA)n Simple_repeat Simple_repeat 3 128 0 2 1120 726 201 35 0 chr5 70187322 70187466 -82349793 + B1_Mur4 SINE Alu 2 150 0 2 1120 232 184 20 0 chr5 70187466 70187564 -82349695 + A-rich Low_complexity Low_complexity 1 100 0 2 1120 1119 298 123 11 chr5 70187715 70188595 -82348664 - L1MA6 LINE L1 -155 6145 5121 2 1120 390 95 81 0 chr5 70188735 70188809 -82348450 + L1Md_F2 LINE L1 6501 6580 -2 2 1120 1269 273 48 11 chr5 70190034 70190408 -82346851 - MLT1F1 LTR MaLR -5 564 177 2 1120 666 35 0 0 chr5 70190409 70190494 -82346765 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 1120 441 0 0 0 chr5 70190494 70190542 -82346717 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1120 1758 131 39 52 chr5 70190989 70191319 -82345940 - Lx LINE L1 -2 6652 6327 2 1120 401 308 45 23 chr5 70191405 70191581 -82345678 + MLT1B LTR MaLR 208 387 -3 2 1120 190 313 118 39 chr5 70192272 70192425 -82344834 - MIRb SINE MIR -67 201 37 2 1120 967 239 9 18 chr5 70192805 70193031 -82344228 + Lx6 LINE L1 7232 7455 -5 2 1120 230 312 78 60 chr5 70193598 70193765 -82343494 - MIR3 SINE MIR -13 195 26 2 1120 1232 101 31 16 chr5 70194938 70195129 -82342130 - B2_Mm2 SINE B2 0 195 2 2 1120 1322 91 16 5 chr5 70195129 70195306 -82341953 - B2_Mm2 SINE B2 -15 180 1 2 1120 292 288 30 74 chr5 70195998 70196133 -82341126 - MTE2a LTR MaLR -29 350 222 2 1120 23 0 0 0 chr5 70196161 70196184 -82341075 + AT_rich Low_complexity Low_complexity 1 23 0 2 1120 1971 261 134 8 chr5 70196234 70196837 -82340422 - Lx6 LINE L1 -26 7434 6756 2 1120 259 217 16 16 chr5 70196832 70196893 -82340366 + L1_Mm LINE L1 4513 4573 -1310 2 1120 672 48 0 0 chr5 70197326 70197410 -82339849 + (TCCC)n Simple_repeat Simple_repeat 4 87 0 3 1120 810 203 0 0 chr5 70197424 70197567 -82339692 - B1_Mus1 SINE Alu 0 148 6 3 1120 363 242 30 104 chr5 70197469 70197603 -82339656 - MT2B LTR ERVL -344 257 134 3 1120 323 326 22 16 chr5 70198315 70198434 -82338825 + MIRc SINE MIR 65 183 -85 3 1120 3169 104 13 2 chr5 70198862 70199324 -82337935 + L1_Mus4 LINE L1 6164 6630 -6 3 1120 192 77 0 0 chr5 70199330 70199356 -82337903 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 3 1120 1371 303 83 30 chr5 70199703 70200339 -82336920 - Lx8 LINE L1 -9 7464 6795 3 1120 24 32 0 0 chr5 70200981 70201012 -82336247 + AT_rich Low_complexity Low_complexity 1 31 0 3 1120 35 0 0 0 chr5 70201697 70201732 -82335527 + AT_rich Low_complexity Low_complexity 1 35 0 3 1120 884 262 14 40 chr5 70201807 70202030 -82335229 - Lx5 LINE L1 -5 7045 6829 3 1120 1095 228 8 16 chr5 70202033 70202283 -82334976 - Lx5 LINE L1 -485 6565 6318 3 1120 333 223 85 28 chr5 70203392 70203498 -82333761 - L2 LINE L2 -978 2441 2330 3 1120 261 317 95 34 chr5 70204010 70204157 -82333102 + RSINE1 SINE B4 4 159 -6 3 1120 414 0 0 0 chr5 70204864 70204910 -82332349 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1120 891 116 7 0 chr5 70205453 70205600 -82331659 - L1_Mus4 LINE L1 -20 6616 6469 3 1120 28 0 0 0 chr5 70207329 70207357 -82329902 + AT_rich Low_complexity Low_complexity 1 28 0 3 1120 222 37 0 0 chr5 70208334 70208361 -82328898 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1120 217 217 22 0 chr5 70209171 70209217 -82328042 + CT-rich Low_complexity Low_complexity 5 51 0 3 1120 238 238 11 121 chr5 70209226 70209317 -82327942 - L1MC4a LINE L1 -678 7283 7203 3 1120 336 364 72 49 chr5 70209409 70209756 -82327503 - L1MC4a LINE L1 -873 7088 6734 3 1120 717 97 0 0 chr5 70209879 70209982 -82327277 + (TCTG)n Simple_repeat Simple_repeat 2 104 0 3 1120 468 91 71 0 chr5 70209995 70210154 -82327105 + (TCTA)n Simple_repeat Simple_repeat 1 170 0 3 1120 368 306 68 34 chr5 70210774 70210980 -82326279 - L1MC4a LINE L1 -1950 5932 5720 3 1120 2593 176 49 36 chr5 70210981 70211534 -82325725 + Lx4B LINE L1 6491 7050 -8 3 1120 35327 71 2 14 chr5 70211810 70217951 -82319308 - L1Md_F2 LINE L1 -12 6570 510 3 1120 196 355 44 60 chr5 70218051 70218234 -82319025 - MIR SINE MIR -6 256 77 3 1120 266 244 52 58 chr5 70218776 70218931 -82318328 - L1M4 LINE L1 -2526 3620 3479 3 1120 369 0 0 0 chr5 70219386 70219427 -82317832 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1120 504 0 0 0 chr5 70220717 70220773 -82316486 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1120 255 234 39 13 chr5 70221591 70221669 -82315590 + GA-rich Low_complexity Low_complexity 5 84 0 3 1120 180 0 0 0 chr5 70221895 70221915 -82315344 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1120 2203 153 5 16 chr5 70221915 70222300 -82314959 - Lx3B LINE L1 0 6973 6593 3 1120 25 31 0 0 chr5 70223274 70223306 -82313953 + AT_rich Low_complexity Low_complexity 1 32 0 3 1120 788 294 110 47 chr5 70223375 70223739 -82313520 - Lx8 LINE L1 -11 7462 7076 3 1120 343 322 76 76 chr5 70223789 70224159 -82313100 - Arthur1 DNA Tip100 -1968 1979 1610 3 1120 320 343 46 76 chr5 70224488 70224750 -82312509 + L1ME2 LINE L1 5899 6152 -12 3 1120 1180 68 0 0 chr5 70224821 70224967 -82312292 - B1_Mus2 SINE Alu 0 147 2 3 1120 24 0 0 0 chr5 70225179 70225203 -82312056 + AT_rich Low_complexity Low_complexity 1 24 0 3 1120 2575 14 0 0 chr5 70227052 70227343 -82309916 - L1_Mm LINE L1 -818 5065 4775 3 1120 479 0 0 0 chr5 70227343 70227459 -82309800 + L1Md_T LINE L1 6522 6582 0 3 1120 22 35 0 0 chr5 70229190 70229219 -82308040 + AT_rich Low_complexity Low_complexity 1 29 0 3 1120 369 188 35 59 chr5 70229699 70229784 -82307475 + B3 SINE B2 70 152 -64 3 1120 315 0 0 0 chr5 70229784 70229819 -82307440 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1120 33 0 0 0 chr5 70229906 70229939 -82307320 + AT_rich Low_complexity Low_complexity 1 33 0 3 1120 314 70 42 14 chr5 70230258 70230330 -82306929 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 3 1120 3401 44 4 111 chr5 70231018 70231550 -82305709 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1120 507 33 0 0 chr5 70231574 70231635 -82305624 + (TATG)n Simple_repeat Simple_repeat 2 62 0 3 1120 6016 172 21 8 chr5 70231643 70232709 -82304550 - Lx LINE L1 -13 6641 5587 3 1120 2779 85 8 0 chr5 70232727 70233103 -82304156 - L1_Mus1 LINE L1 0 6567 6189 3 1120 1864 154 3 42 chr5 70233301 70233633 -82303626 + Lx4A LINE L1 6735 7053 -5 3 1120 504 111 0 0 chr5 70233633 70233714 -82303545 + (TAA)n Simple_repeat Simple_repeat 2 82 0 3 1120 977 291 120 24 chr5 70233998 70234493 -82302766 - L1MB7 LINE L1 -21 6163 5611 3 1120 7451 229 74 20 chr5 70235223 70238176 -82299083 - Lx6 LINE L1 0 7460 4331 3 1120 209 30 61 0 chr5 70238176 70238209 -82299050 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1120 7451 195 94 15 chr5 70238209 70238610 -82298649 - Lx6 LINE L1 -1550 4330 3912 3 1120 345 125 0 0 chr5 70239389 70239445 -82297814 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1120 425 195 0 24 chr5 70239806 70239890 -82297369 - Lx9 LINE L1 -387 7257 7176 3 1120 364 181 14 0 chr5 70239875 70239947 -82297312 + Lx9 LINE L1 7302 7374 -270 3 1120 257 146 55 0 chr5 70239940 70239995 -82297264 + Lx9 LINE L1 7587 7644 0 3 1120 464 320 83 89 chr5 70240103 70240644 -82296615 - L1MC1 LINE L1 -6 6327 5790 3 1120 283 206 104 70 chr5 70240957 70241072 -82296187 - Lx7 LINE L1 -1788 5908 5790 3 1120 456 275 25 55 chr5 70242568 70242768 -82294491 - L1MC1 LINE L1 -1771 4375 4182 3 1120 934 178 154 5 chr5 70242770 70242984 -82294275 - RMER1C Other Other -2 1340 1095 3 1120 506 289 104 22 chr5 70242989 70243354 -82293905 - L1MC1 LINE L1 -1985 4161 3767 3 1120 5664 188 95 22 chr5 70244143 70245786 -82291473 - Lx5 LINE L1 -211 6839 5094 3 1120 1815 148 36 7 chr5 70245786 70246091 -82291168 + ORR1A2 LTR MaLR 94 407 0 3 1120 9119 151 123 11 chr5 70246091 70246803 -82290456 + ORR1A2-int LTR MaLR 1 893 -1070 3 1120 180 0 0 0 chr5 70246803 70246823 -82290436 + (G)n Simple_repeat Simple_repeat 1 20 0 3 1120 9119 151 123 11 chr5 70246823 70247875 -82289384 + ORR1A2-int LTR MaLR 894 1962 -1 3 1120 2229 111 9 6 chr5 70247875 70248201 -82289058 + ORR1A2 LTR MaLR 1 327 0 3 1120 2625 169 56 2 chr5 70248201 70248735 -82288524 - L1_Mur2 LINE L1 -2138 3739 3177 3 1120 7548 72 14 5 chr5 70248747 70249919 -82287340 + L1_Mus1 LINE L1 5383 6566 -1 3 1120 8585 181 81 24 chr5 70249933 70252090 -82285169 - L1_Mur2 LINE L1 -2678 3199 919 3 1120 2193 107 17 22 chr5 70252730 70253085 -82284174 - L1_Mus3 LINE L1 0 6638 6286 3 1120 4208 91 0 27 chr5 70253114 70253713 -82283546 + L1_Mus3 LINE L1 5641 6223 -415 3 1120 22 56 0 0 chr5 70253893 70253929 -82283330 + AT_rich Low_complexity Low_complexity 1 36 0 3 1121 582 114 0 0 chr5 70254676 70254764 -82282495 + (TA)n Simple_repeat Simple_repeat 1 88 0 3 1121 351 0 0 0 chr5 70254774 70254813 -82282446 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1121 230 328 15 0 chr5 70254849 70254916 -82282343 + B1F SINE Alu 33 100 -49 3 1121 21 36 0 0 chr5 70255011 70255039 -82282220 + AT_rich Low_complexity Low_complexity 1 28 0 3 1121 285 216 66 33 chr5 70255180 70255271 -82281988 + MER53 DNA hAT 31 124 -69 3 1121 245 236 18 0 chr5 70255504 70255559 -82281700 + L2a LINE L2 3371 3426 0 3 1121 230 299 25 38 chr5 70256813 70256893 -82280366 - MLT1A1 LTR MaLR -12 396 318 3 1121 824 55 9 0 chr5 70257205 70257315 -82279944 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 3 1121 303 85 0 0 chr5 70258459 70258506 -82278753 + (T)n Simple_repeat Simple_repeat 1 47 0 3 1121 261 0 0 0 chr5 70259810 70259839 -82277420 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 1121 9135 158 48 8 chr5 70260187 70260698 -82276561 - L1_Mur1 LINE L1 0 5886 5362 3 1121 2381 189 2 2 chr5 70260698 70261148 -82276111 - Lx LINE L1 0 6654 6205 3 1121 9135 158 48 8 chr5 70261148 70262348 -82274911 - L1_Mur1 LINE L1 -525 5361 4106 3 1121 7425 108 6 0 chr5 70262352 70263396 -82273863 + L1_Mus4 LINE L1 5587 6636 0 3 1121 2055 59 0 4 chr5 70263954 70264210 -82273049 + L1Md_F2 LINE L1 5332 5586 -297 3 1121 7937 54 3 0 chr5 70264210 70265191 -82272068 + L1Md_F2 LINE L1 5587 6570 -12 3 1121 286 348 52 7 chr5 70265968 70266104 -82271155 - Charlie5 DNA MER1_type -2463 161 20 3 1121 1371 295 63 70 chr5 70266184 70266782 -82270477 - MTD-int LTR MaLR -663 595 2 3 1121 530 239 264 34 chr5 70266787 70267040 -82270219 - MTD LTR MaLR -20 399 83 3 1121 265 259 216 6 chr5 70267114 70267285 -82269974 + Tigger5 DNA MER2_type 2146 2352 -54 3 1121 243 241 0 0 chr5 70267477 70267531 -82269728 + MLT2B4 LTR ERVL 5 58 -498 3 1121 1325 25 0 6 chr5 70267540 70267702 -82269557 + (TCTCCC)n Simple_repeat Simple_repeat 3 163 0 3 1121 644 323 39 77 chr5 70267712 70267997 -82269262 + ORR1E LTR MaLR 84 357 -2 3 1121 22 35 0 0 chr5 70268020 70268049 -82269210 + AT_rich Low_complexity Low_complexity 1 29 0 3 1121 256 333 11 0 chr5 70269219 70269309 -82267950 - ERVL-E-int LTR ERVL -646 5021 4931 3 1121 318 340 32 6 chr5 70270310 70270467 -82266792 - MIR SINE MIR -5 257 97 3 1121 503 301 131 78 chr5 70270584 70270786 -82266473 - MTE2a LTR MaLR 0 379 175 3 1121 2556 70 120 3 chr5 70270786 70271161 -82266098 + L1_Mus3 LINE L1 6217 6635 -3 3 1121 503 301 131 78 chr5 70271161 70271318 -82265941 - MTE2a LTR MaLR -205 174 1 3 1121 24 53 0 0 chr5 70271328 70271366 -82265893 + AT_rich Low_complexity Low_complexity 1 38 0 3 1121 23 0 0 0 chr5 70271657 70271680 -82265579 + AT_rich Low_complexity Low_complexity 1 23 0 3 1121 225 0 0 0 chr5 70271845 70271870 -82265389 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3 1121 14753 159 6 112 chr5 70271883 70274824 -82262435 - L1Md_F2 LINE L1 0 6582 4434 3 1121 8972 4 0 1 chr5 70274824 70275821 -82261438 + L1Md_T LINE L1 5587 6582 0 3 1121 19943 87 5 4 chr5 70275821 70279017 -82258242 - L1Md_F2 LINE L1 -1440 4443 1250 3 1121 279 0 0 0 chr5 70279017 70279048 -82258211 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1121 16495 98 16 1 chr5 70279048 70279893 -82257366 - L1Md_F2 LINE L1 -4634 1249 392 3 1121 902 152 18 6 chr5 70279894 70280060 -82257199 - L1_Mus3 LINE L1 -14 6624 6457 3 1121 294 346 71 34 chr5 70280376 70280645 -82256614 - L1M2 LINE L1 -990 5153 4875 3 1121 471 354 24 53 chr5 70280698 70280904 -82256355 - MTE2a LTR MaLR -140 239 40 3 1121 622 289 68 6 chr5 70280977 70281314 -82255945 - L1M2 LINE L1 -1359 4784 4427 3 1121 250 317 163 34 chr5 70281415 70281562 -82255697 - MLT1H LTR MaLR -259 290 125 3 1121 189 175 0 0 chr5 70281666 70281706 -82255553 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 3 1121 405 0 0 0 chr5 70281805 70281850 -82255409 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1121 420 240 182 0 chr5 70282761 70282882 -82254377 + B1F SINE Alu 2 144 -5 4 1121 21 36 0 0 chr5 70282951 70282979 -82254280 + AT_rich Low_complexity Low_complexity 1 28 0 4 1121 350 299 35 50 chr5 70283119 70283260 -82253999 + MTE2a LTR MaLR 66 204 -175 4 1121 195 114 0 0 chr5 70283408 70283443 -82253816 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1121 629 238 130 63 chr5 70283444 70283622 -82253637 - Lx7 LINE L1 0 7696 7486 4 1121 4334 33 8 0 chr5 70283622 70284141 -82253118 + L1Md_T LINE L1 6059 6581 -1 4 1121 629 238 130 63 chr5 70284141 70284262 -82252997 - Lx7 LINE L1 -211 7485 7377 4 1121 2509 264 16 33 chr5 70284268 70284970 -82252289 - Lx7 LINE L1 -946 6750 6061 4 1121 310 338 51 74 chr5 70286179 70286515 -82250744 + L1ME3B LINE L1 5659 5986 -254 4 1121 878 239 119 46 chr5 70286775 70286893 -82250366 - Lx5 LINE L1 -3 7047 6898 4 1121 594 0 0 0 chr5 70286893 70286959 -82250300 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1121 369 0 0 0 chr5 70286959 70286999 -82250260 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1121 878 239 119 46 chr5 70286999 70287164 -82250095 - Lx5 LINE L1 -153 6897 6743 4 1121 1055 286 42 7 chr5 70287267 70287577 -82249682 - Lx6 LINE L1 -1261 6199 5879 4 1121 453 294 49 18 chr5 70287598 70287761 -82249498 - Lx9 LINE L1 -482 7162 6995 4 1121 575 336 43 43 chr5 70287768 70288045 -82249214 + Lx9 LINE L1 6531 6807 -837 4 1121 198 91 0 0 chr5 70288354 70288387 -82248872 + (T)n Simple_repeat Simple_repeat 1 33 0 4 1121 414 297 7 35 chr5 70288545 70288688 -82248571 + Lx9 LINE L1 6824 6962 -682 4 1121 3011 231 21 32 chr5 70289837 70290840 -82246419 + Lx7 LINE L1 5097 6083 -1613 4 1121 307 316 36 65 chr5 70290860 70291096 -82246163 - B4A SINE B4 -10 282 8 4 1121 420 20 0 0 chr5 70292968 70293017 -82244242 + (TAA)n Simple_repeat Simple_repeat 3 51 0 4 1121 261 128 0 0 chr5 70293471 70293518 -82243741 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1121 306 73 0 0 chr5 70293545 70293586 -82243673 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1121 285 51 0 0 chr5 70293726 70293765 -82243494 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1121 1833 67 0 4 chr5 70293773 70294014 -82243245 - L1_Mus2 LINE L1 0 6566 6327 4 1121 243 0 0 0 chr5 70294116 70294143 -82243116 + (TAA)n Simple_repeat Simple_repeat 2 28 0 4 1121 239 91 89 25 chr5 70294254 70294333 -82242926 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 1121 416 299 26 63 chr5 70294673 70294862 -82242397 + B3A SINE B2 1 182 -16 4 1121 213 297 79 26 chr5 70295436 70295512 -82241747 - L2 LINE L2 -510 2909 2830 4 1121 28591 76 2 2 chr5 70295723 70300542 -82236717 - L1Md_F LINE L1 -759 5124 307 4 1121 29 28 0 0 chr5 70300636 70300672 -82236587 + AT_rich Low_complexity Low_complexity 1 36 0 4 1121 861 308 130 20 chr5 70302100 70302454 -82234805 + Lx9 LINE L1 6545 6937 -707 4 1121 40717 12 0 6 chr5 70302784 70308989 -82228270 - L1Md_A LINE L1 0 6582 422 4 1121 514 338 23 50 chr5 70309248 70309469 -82227790 - ID_B1 SINE B4 -1 223 9 4 1121 198 0 0 0 chr5 70309499 70309521 -82227738 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1121 211 254 32 0 chr5 70309739 70309802 -82227457 + CT-rich Low_complexity Low_complexity 3 67 0 4 1121 446 97 28 0 chr5 70310333 70310405 -82226854 + U2 snRNA snRNA 1 74 -114 4 1121 22 56 0 0 chr5 70310437 70310473 -82226786 + AT_rich Low_complexity Low_complexity 1 36 0 4 1121 1017 280 67 36 chr5 70310871 70311230 -82226029 + ORR1D2 LTR MaLR 1 370 0 4 1121 194 258 75 15 chr5 70311255 70311322 -82225937 + L3 LINE CR1 741 811 -3678 4 1121 210 432 70 9 chr5 70311884 70312099 -82225160 - MIRb SINE MIR -11 257 30 4 1121 489 341 61 20 chr5 70312207 70312614 -82224645 - L1MC3 LINE L1 -45 7740 7317 4 1121 342 352 64 0 chr5 70312954 70313079 -82224180 + RCHARR1 DNA MER1_type 89 221 -753 4 1121 1496 92 0 5 chr5 70313096 70313303 -82223956 - L1_Mus2 LINE L1 -291 6275 6070 4 1121 1722 62 4 55 chr5 70313303 70313559 -82223700 + L1_Mus2 LINE L1 5840 6082 -484 4 1121 1052 192 0 117 chr5 70313559 70313807 -82223452 + URR1B DNA MER1_type 7 225 0 4 1121 386 353 90 0 chr5 70313849 70313982 -82223277 - B3 SINE B2 -58 158 14 4 1121 37 23 0 0 chr5 70314189 70314233 -82223026 + AT_rich Low_complexity Low_complexity 1 44 0 4 1121 1045 262 66 13 chr5 70314422 70314717 -82222542 - MTD LTR MaLR -2 417 107 4 1121 525 318 29 6 chr5 70314717 70314891 -82222368 + B3 SINE B2 1 178 -38 4 1121 270 254 63 0 chr5 70314897 70314960 -82222299 - MTD LTR MaLR -332 87 21 4 1121 405 248 0 17 chr5 70315180 70315295 -82221964 - L1_Rod LINE L1 -15 5832 5720 4 1121 3884 216 107 28 chr5 70315296 70316034 -82221225 + RMER12 LTR ERVK 1 761 -561 4 1121 858 102 0 0 chr5 70316034 70316161 -82221098 + (TCCA)n Simple_repeat Simple_repeat 1 127 0 4 1121 3884 231 114 34 chr5 70316161 70316684 -82220575 + RMER12 LTR ERVK 762 1167 -155 4 1121 227 247 0 11 chr5 70316938 70317028 -82220231 + (TATATG)n Simple_repeat Simple_repeat 6 94 0 4 1121 407 370 118 39 chr5 70317062 70317417 -82219842 - MLT2B2 LTR ERVL -78 437 55 4 1121 762 48 0 0 chr5 70317536 70317639 -82219620 + (TC)n Simple_repeat Simple_repeat 1 103 0 4 1121 441 0 0 0 chr5 70317639 70317687 -82219572 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1121 471 260 153 27 chr5 70317782 70318382 -82218877 - L1MEc LINE L1 -5075 1325 650 4 1121 235 209 58 29 chr5 70319876 70319945 -82217314 + Lx5 LINE L1 6299 6369 -681 4 1121 1840 251 147 72 chr5 70319912 70320581 -82216678 + Lx6 LINE L1 6555 7273 -187 4 1121 866 159 0 12 chr5 70320581 70320746 -82216513 + CT-rich Low_complexity Low_complexity 5 167 0 4 1121 705 97 0 0 chr5 70320748 70320851 -82216408 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 4 1121 583 201 14 27 chr5 70320855 70321003 -82216256 + Lx6 LINE L1 7301 7446 -14 4 1121 2791 221 15 48 chr5 70321231 70322012 -82215247 - RMER1A Other Other -5 1025 1 4 1121 477 0 0 0 chr5 70322032 70322085 -82215174 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1121 405 0 0 0 chr5 70322085 70322129 -82215130 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1121 1607 252 141 24 chr5 70322269 70322765 -82214494 - Lx4B LINE L1 -4 7054 6501 4 1121 28730 134 19 5 chr5 70323728 70329132 -82208127 - L1Md_F LINE L1 -19 5864 380 4 1121 316 235 107 48 chr5 70330813 70330916 -82206343 - B4 SINE B4 -182 110 2 4 1121 3043 163 43 88 chr5 70331923 70332595 -82204664 + RLTR26 LTR ERVK 1 642 0 4 1121 1278 98 16 0 chr5 70333501 70333685 -82203574 + ORR1A2 LTR MaLR 2 188 -139 4 1121 1154 167 4 3 chr5 70333685 70333892 -82203367 - Lx2B LINE L1 -446 5866 5657 4 1121 180 111 0 0 chr5 70333939 70333966 -82203293 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1121 3905 208 72 38 chr5 70333981 70334937 -82202322 + RLTR25B LTR ERVK 25 1013 -15 4 1121 3365 109 0 2 chr5 70335903 70336382 -82200877 - L1_Mm LINE L1 -725 5158 4681 4 1121 2767 71 19 3 chr5 70336382 70336750 -82200509 + L1_Mus1 LINE L1 6184 6557 -10 4 1121 1014 59 14 29 chr5 70337408 70337547 -82199712 + B1_Mus1 SINE Alu 1 137 -11 4 1121 655 205 182 12 chr5 70337778 70338025 -82199234 + Lx5 LINE L1 3081 3369 -2511 4 1121 423 0 0 0 chr5 70338053 70338100 -82199159 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 4 1121 637 299 4 8 chr5 70338213 70338449 -82198810 + Lx5 LINE L1 3394 3628 -2252 4 1121 614 287 28 17 chr5 70338445 70338622 -82198637 + Lx8 LINE L1 6368 6546 -927 4 1121 488 281 34 0 chr5 70338627 70338773 -82198486 + Lx8 LINE L1 6970 7120 -353 4 1121 378 114 0 0 chr5 70339236 70339306 -82197953 + (T)n Simple_repeat Simple_repeat 1 70 0 4 1121 1171 61 0 0 chr5 70339306 70339453 -82197806 - B1_Mus2 SINE Alu 0 147 1 4 1121 3151 211 30 139 chr5 70339580 70340761 -82196498 + Lx5 LINE L1 4991 6106 -944 4 1121 1113 71 13 0 chr5 70340761 70341071 -82196188 + (GA)n Simple_repeat Simple_repeat 1 313 0 4 1121 2569 283 94 117 chr5 70341071 70342067 -82195192 + Lx5 LINE L1 6107 7031 -19 4 1121 919 259 31 47 chr5 70342562 70342870 -82194389 + MTD LTR MaLR 64 419 0 4 1121 301 89 0 43 chr5 70344371 70344418 -82192841 + HAL1-3A_ME LINE L1 1974 2018 -840 4 1121 371 215 4 40 chr5 70344422 70344674 -82192585 + (CA)n Simple_repeat Simple_repeat 1 242 0 4 1121 199 262 60 112 chr5 70344752 70344868 -82192391 + L3 LINE CR1 3527 3636 -853 4 1121 338 337 59 35 chr5 70348391 70348560 -82188699 - MLT1J2 LTR MaLR -224 220 48 4 1121 1774 263 59 9 chr5 70349673 70350129 -82187130 - Lx6 LINE L1 -15 7445 6967 4 1121 25 0 0 0 chr5 70350396 70350421 -82186838 + AT_rich Low_complexity Low_complexity 1 25 0 4 1121 327 65 0 0 chr5 70350970 70351016 -82186243 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1121 5154 87 7 1 chr5 70351234 70351927 -82185332 - L1_Mus1 LINE L1 -1 6566 5870 4 1121 424 218 11 0 chr5 70352057 70352144 -82185115 - B1_Mus2 SINE Alu 0 147 60 4 1121 1127 314 101 45 chr5 70352150 70352796 -82184463 - Lx8 LINE L1 -151 7322 6641 4 1121 1204 251 23 55 chr5 70352847 70353231 -82184028 - ORR1D1 LTR MaLR -2 372 1 4 1121 2255 216 87 43 chr5 70353253 70353910 -82183349 + RMER6C LTR ERVK 1 686 -4 4 1121 28081 103 9 3 chr5 70353925 70358793 -82178466 + L1_Mus1 LINE L1 1664 6559 -8 4 1121 1238 61 6 12 chr5 70358793 70358959 -82178300 + MTB LTR MaLR 180 344 -56 4 1121 1909 105 0 0 chr5 70358985 70359251 -82178008 - Lx2A LINE L1 -174 6834 6569 4 1121 474 104 0 13 chr5 70359251 70359329 -82177930 + Lx2A LINE L1 6926 7002 -6 4 1121 618 286 65 20 chr5 70359366 70359566 -82177693 + Lx8 LINE L1 6326 6534 -939 4 1121 819 131 0 0 chr5 70359897 70360034 -82177225 + (TA)n Simple_repeat Simple_repeat 1 137 0 4 1121 255 349 12 0 chr5 70360517 70360600 -82176659 - MIR SINE MIR -166 96 13 4 1121 204 40 0 0 chr5 70361026 70361051 -82176208 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1121 1800 262 24 28 chr5 70361556 70362024 -82175235 + Lx6 LINE L1 6977 7442 -18 4 1121 1955 351 77 77 chr5 70362024 70362477 -82174782 - MTE-int LTR MaLR -261 1319 849 4 1121 2371 117 14 11 chr5 70362477 70362841 -82174418 - RLTR8 LTR ERVK 0 365 1 5 1121 1955 351 77 77 chr5 70362841 70363705 -82173554 - MTE-int LTR MaLR -732 848 2 4 1121 618 298 96 59 chr5 70363751 70364054 -82173205 - ORR1E LTR MaLR -37 322 9 5 1121 480 35 0 0 chr5 70364183 70364241 -82173018 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 5 1121 1287 267 74 23 chr5 70364321 70364470 -82172789 + ORR1C2 LTR MaLR 14 170 -214 5 1121 297 0 0 0 chr5 70364470 70364503 -82172756 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 5 1121 1287 267 74 23 chr5 70364503 70364706 -82172553 + ORR1C2 LTR MaLR 171 384 0 5 1121 635 312 199 3 chr5 70365079 70365391 -82171868 - LTR52 LTR ERVL -46 375 3 5 1121 426 305 122 47 chr5 70366064 70366236 -82171023 - B4 SINE B4 -6 286 102 5 1121 22 35 0 0 chr5 70366620 70366649 -82170610 + AT_rich Low_complexity Low_complexity 1 29 0 5 1121 347 326 13 46 chr5 70367237 70367388 -82169871 - RSINE1 SINE B4 -17 148 3 5 1121 1101 82 7 0 chr5 70367407 70367553 -82169706 + B1_Mm SINE Alu 1 147 0 5 1121 272 119 0 17 chr5 70367556 70367616 -82169643 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 5 1121 1579 142 46 3 chr5 70368613 70368896 -82168363 + Lx2A1 LINE L1 6697 6991 -17 5 1121 227 31 31 0 chr5 70368896 70368928 -82168331 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 5 1121 413 110 0 14 chr5 70369666 70369740 -82167519 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 1121 363 44 0 0 chr5 70369740 70369785 -82167474 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1121 7571 60 14 7 chr5 70370578 70371972 -82165287 - L1Md_F2 LINE L1 -3 6579 5175 5 1121 434 155 0 0 chr5 70371970 70372041 -82165218 + L1_Mur2 LINE L1 5098 5168 -709 5 1121 26 50 0 0 chr5 70372571 70372611 -82164648 + AT_rich Low_complexity Low_complexity 1 40 0 5 1121 27 0 0 0 chr5 70372652 70372679 -82164580 + AT_rich Low_complexity Low_complexity 1 27 0 5 1121 515 314 18 49 chr5 70372682 70372846 -82164413 - B3 SINE B2 -57 159 1 5 1121 278 277 34 57 chr5 70373150 70373238 -82164021 - MLT2C1 LTR ERVL -215 249 164 5 1121 1137 128 0 0 chr5 70373262 70373442 -82163817 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1121 198 103 0 0 chr5 70373442 70373471 -82163788 + (TCCCC)n Simple_repeat Simple_repeat 4 32 0 5 1121 8607 115 11 39 chr5 70373474 70375051 -82162208 - Lx3A LINE L1 -2 6979 5462 5 1121 329 266 133 64 chr5 70375051 70375113 -82162146 - MLT2C1 LTR ERVL -191 206 132 5 1121 1180 68 6 0 chr5 70375113 70375275 -82161984 - L1_Mus1 LINE L1 0 6567 6405 5 1121 329 266 133 64 chr5 70375275 70375385 -82161874 - MLT2C1 LTR ERVL -266 131 22 5 1121 261 208 0 0 chr5 70375775 70375847 -82161412 + T-rich Low_complexity Low_complexity 1 72 0 5 1121 1089 349 47 27 chr5 70377657 70378172 -82159087 - MT2A LTR ERVL -8 525 1 5 1121 1225 165 36 9 chr5 70378304 70378524 -82158735 - URR1A DNA MER1_type 0 226 1 5 1121 1720 204 38 50 chr5 70378990 70379407 -82157852 + MTC LTR MaLR 2 413 -8 5 1121 240 259 0 0 chr5 70380268 70380322 -82156937 + Lx4B LINE L1 6887 6940 -118 5 1121 5282 45 0 6 chr5 70380837 70381488 -82155771 + L1Md_F3 LINE L1 5934 6580 -4 5 1121 272 345 94 18 chr5 70381946 70382117 -82155142 + Ricksha_c DNA MuDR 602 785 -1263 5 1121 368 241 0 7 chr5 70382673 70382811 -82154448 + CT-rich Low_complexity Low_complexity 3 139 0 5 1121 358 299 19 87 chr5 70382828 70382983 -82154276 - B3A SINE B2 -46 170 20 5 1121 260 365 97 103 chr5 70384172 70384462 -82152797 + B4 SINE B4 1 288 -4 5 1121 197 128 0 21 chr5 70384508 70384556 -82152703 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 5 1121 258 161 18 0 chr5 70385388 70385444 -82151815 - L1MA5 LINE L1 -21 6279 6223 5 140 4216 253 27 14 chr5 70385454 70386431 -82150828 - Lx5 LINE L1 -3 7047 6059 5 1122 3194 170 131 65 chr5 70386444 70386809 -82150450 + RMER6-int LTR ERVK 2154 2583 -594 5 1122 263 178 22 0 chr5 70386809 70386854 -82150405 + LSU-rRNA_Hsa rRNA rRNA 1777 1822 -3213 5 1122 3194 170 131 65 chr5 70386854 70386902 -82150357 + RMER6-int LTR ERVK 2584 2642 -535 5 1122 3332 44 97 0 chr5 70386902 70387335 -82149924 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1122 3194 170 131 65 chr5 70387335 70387671 -82149588 + RMER6-int LTR ERVK 2643 3000 -177 5 1122 4126 204 75 21 chr5 70387686 70388801 -82148458 - L1_Mur2 LINE L1 -1659 4218 3044 5 1122 363 268 69 21 chr5 70390709 70390854 -82146405 - L1M2 LINE L1 -2483 3660 3509 5 1122 1840 182 50 0 chr5 70391209 70391550 -82145709 + RLTR14 LTR ERV1 15 372 -10 5 1122 25 65 0 0 chr5 70391829 70391875 -82145384 + AT_rich Low_complexity Low_complexity 1 46 0 5 1122 630 371 29 0 chr5 70393139 70393344 -82143915 + B4A SINE B4 10 220 -72 5 1122 387 254 48 82 chr5 70393357 70393503 -82143756 + B3A SINE B2 1 141 -54 5 1122 35924 35 2 7 chr5 70393503 70398577 -82138682 + L1Md_T LINE L1 547 5586 -297 5 1122 8102 45 2 1 chr5 70398577 70399572 -82137687 + L1Md_T LINE L1 5587 6582 0 5 1122 261 284 24 47 chr5 70399627 70399712 -82137547 + B3 SINE B2 91 173 -43 5 1122 519 82 0 0 chr5 70399717 70399790 -82137469 + (CA)n Simple_repeat Simple_repeat 1 73 0 5 1122 531 0 0 0 chr5 70399794 70399853 -82137406 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 1122 266 288 0 0 chr5 70400208 70400267 -82136992 - B3A SINE B2 -139 59 1 5 1122 211 330 20 20 chr5 70400627 70400729 -82136530 + MIRb SINE MIR 11 112 -156 5 1122 231 353 47 0 chr5 70401207 70401292 -82135967 + MLT1J1 LTR MaLR 3 91 -353 5 1122 750 303 40 39 chr5 70401502 70401808 -82135451 + ORR1E LTR MaLR 49 379 0 5 1122 263 356 107 28 chr5 70401860 70402149 -82135110 + L2a LINE L2 2935 3246 -180 5 1122 21 0 0 0 chr5 70402599 70402620 -82134639 + AT_rich Low_complexity Low_complexity 1 21 0 5 1122 21 0 0 0 chr5 70402969 70402990 -82134269 + AT_rich Low_complexity Low_complexity 1 21 0 5 1122 1176 103 0 0 chr5 70403059 70403233 -82134026 + (TTCC)n Simple_repeat Simple_repeat 2 175 0 5 1122 482 338 35 54 chr5 70404090 70404180 -82133079 - MER44A DNA MER2_type 0 339 253 5 1122 315 0 0 0 chr5 70404180 70404215 -82133044 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1122 482 338 35 54 chr5 70404215 70404251 -82133008 - MER44A DNA MER2_type -87 252 223 5 1122 462 49 0 0 chr5 70404251 70404312 -82132947 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1122 482 338 35 54 chr5 70404312 70404497 -82132762 - MER44A DNA MER2_type -117 222 33 5 1122 6436 74 47 27 chr5 70404982 70405901 -82131358 - L1_Mus2 LINE L1 -2 6564 5628 5 1122 7160 110 12 16 chr5 70405889 70407005 -82130254 + L1_Mus2 LINE L1 4471 5581 -302 5 1122 384 306 37 7 chr5 70408607 70408742 -82128517 + B1F SINE Alu 1 139 -10 5 1122 445 16 16 16 chr5 70408898 70408961 -82128298 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1122 8016 34 0 0 chr5 70411187 70412803 -82124456 - L1Md_T LINE L1 0 6582 4967 5 1122 669 261 19 9 chr5 70412955 70413166 -82124093 - B3A SINE B2 0 216 1 5 1122 272 245 0 0 chr5 70413711 70413764 -82123495 - ID_B1 SINE B4 -20 204 152 5 1122 3242 114 2 20 chr5 70414505 70415005 -82122254 - Lx3_Mus LINE L1 -150 6859 6369 5 1122 511 152 30 96 chr5 70414986 70415153 -82122106 + Lx3_Mus LINE L1 6854 7009 0 5 1122 23 0 0 0 chr5 70415449 70415472 -82121787 + AT_rich Low_complexity Low_complexity 1 23 0 5 1122 399 98 0 0 chr5 70415801 70415862 -82121397 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1122 387 162 0 0 chr5 70416279 70416359 -82120900 + T-rich Low_complexity Low_complexity 1 80 0 5 1122 1457 286 123 26 chr5 70416820 70417445 -82119814 - Lx8 LINE L1 -15 7458 6773 5 1122 385 303 58 43 chr5 70417446 70417653 -82119606 - L1MCb LINE L1 -5268 1483 1274 5 1122 485 360 60 42 chr5 70417969 70418470 -82118789 - L1MCb LINE L1 -4878 1167 658 5 1122 727 286 51 40 chr5 70418489 70418878 -82118381 - RLTR40 LTR ERVK -4 813 337 5 1122 1108 59 0 0 chr5 70418878 70419014 -82118245 + B1_Mm SINE Alu 1 136 -11 5 1122 483 48 0 0 chr5 70419014 70419076 -82118183 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 5 1122 727 270 61 58 chr5 70419076 70419148 -82118111 - RLTR40 LTR ERVK -481 336 259 5 1122 532 87 22 0 chr5 70419151 70419243 -82118016 + (GGGA)n Simple_repeat Simple_repeat 3 96 0 5 1122 355 157 29 0 chr5 70419246 70419316 -82117943 - RLTR40 LTR ERVK -534 283 212 5 1122 518 237 70 0 chr5 70419352 70419508 -82117751 - RLTR40 LTR ERVK -601 216 50 5 1122 877 105 15 0 chr5 70419517 70419650 -82117609 - L1_Mus3 LINE L1 -577 6061 5927 5 1122 4050 62 22 13 chr5 70419650 70420204 -82117055 + L1_Mus3 LINE L1 6080 6638 0 5 1122 792 170 13 20 chr5 70420204 70420220 -82117039 - L1_Mus3 LINE L1 -710 5926 5914 5 1122 963 116 0 40 chr5 70420395 70420547 -82116712 - B1_Mus2 SINE Alu 0 147 2 5 1122 952 130 6 6 chr5 70420600 70420770 -82116489 + Lx LINE L1 6485 6654 0 5 1122 25 0 0 0 chr5 70421464 70421489 -82115770 + AT_rich Low_complexity Low_complexity 1 25 0 5 1122 352 264 0 9 chr5 70421492 70421599 -82115660 - Lx9 LINE L1 -6 7638 7533 5 1122 1194 224 39 25 chr5 70421614 70421894 -82115365 + Lx9 LINE L1 7039 7322 -322 5 1122 339 121 0 0 chr5 70422102 70422160 -82115099 + (CCAA)n Simple_repeat Simple_repeat 3 60 0 5 1122 431 271 41 88 chr5 70422166 70422336 -82114923 + RSINE1 SINE B4 4 165 0 5 1122 735 224 0 7 chr5 70422686 70422834 -82114425 - B1_Mur4 SINE Alu 0 150 4 5 1122 234 280 109 98 chr5 70424069 70424243 -82113016 - MLT1K LTR MaLR -27 568 393 5 1122 624 316 64 62 chr5 70424549 70424907 -82112352 + MLT1A0 LTR MaLR 1 359 -6 5 1122 258 354 61 28 chr5 70424915 70425127 -82112132 + MLT2B3 LTR ERVL 1 219 -335 5 1122 335 436 30 0 chr5 70425720 70425917 -82111342 - LTR16D2 LTR ERVL -216 356 154 5 1122 225 322 144 0 chr5 70426739 70426829 -82110430 + MTEa LTR MaLR 19 121 -238 5 1122 256 339 8 17 chr5 70426931 70427048 -82110211 + MTEa LTR MaLR 256 371 -8 5 1122 23 54 0 0 chr5 70428347 70428384 -82108875 + AT_rich Low_complexity Low_complexity 1 37 0 5 1122 462 79 0 0 chr5 70429776 70429839 -82107420 + (TATG)n Simple_repeat Simple_repeat 4 66 0 5 1122 500 327 55 22 chr5 70430359 70430634 -82106625 - B4A SINE B4 -4 288 5 5 1122 291 265 67 17 chr5 70431168 70431287 -82105972 + RMER15 LTR ERVL 341 465 -110 5 1122 1620 154 60 15 chr5 70431372 70431707 -82105552 - Lx2A1 LINE L1 -5 7003 6654 5 1122 2170 244 79 34 chr5 70431922 70432488 -82104771 - Lx9 LINE L1 -1694 5950 5331 5 1122 261 0 0 0 chr5 70432488 70432517 -82104742 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1122 2170 242 80 33 chr5 70432517 70432860 -82104399 - Lx9 LINE L1 -517 5330 4970 5 1122 326 262 50 0 chr5 70433084 70433164 -82104095 + Lx9 LINE L1 6933 7016 -628 5 1122 298 303 98 8 chr5 70433188 70433321 -82103938 + Lx9 LINE L1 7226 7370 -274 5 1122 1498 282 22 65 chr5 70433327 70433835 -82103424 - RMER19C LTR ERVK 0 611 126 6 1122 340 291 41 50 chr5 70433890 70434132 -82103127 + Lx9 LINE L1 7402 7641 -3 5 1122 273 57 0 0 chr5 70434214 70434249 -82103010 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1122 225 0 0 0 chr5 70434257 70434282 -82102977 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1122 567 242 58 15 chr5 70434308 70434478 -82102781 - B3 SINE B2 -2 196 9 6 1122 35 54 0 0 chr5 70434478 70434534 -82102725 + AT_rich Low_complexity Low_complexity 1 56 0 6 1122 1182 286 86 51 chr5 70434780 70435313 -82101946 + Tigger6a DNA MER2_type 394 945 -138 6 1122 7128 102 16 12 chr5 70435318 70436101 -82101158 - L1_Mus3 LINE L1 0 6638 5863 6 1122 279 0 0 0 chr5 70436101 70436132 -82101127 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1122 7128 108 19 12 chr5 70436132 70436437 -82100822 - L1_Mus3 LINE L1 -21 5862 5546 6 1122 1601 181 21 67 chr5 70436426 70436799 -82100460 + L1_Mm LINE L1 4591 4946 -937 6 1122 37189 48 3 9 chr5 70436792 70442785 -82094474 - L1Md_F2 LINE L1 0 6582 643 6 1122 2117 168 0 8 chr5 70442785 70443154 -82094105 + L1_Mm LINE L1 4922 5288 -595 6 1122 679 45 27 0 chr5 70443154 70443264 -82093995 + L1Md_F3 LINE L1 6472 6584 0 6 1122 516 286 14 9 chr5 70443275 70443493 -82093766 + L1_Mus2 LINE L1 321 494 -6147 6 1122 28280 131 11 20 chr5 70443620 70449707 -82087552 + L1_Mus2 LINE L1 418 6569 0 6 1122 1614 128 3 91 chr5 70449719 70450079 -82087180 + L1_Mm LINE L1 5255 5621 -2374 6 1122 244 340 37 19 chr5 70450524 70450632 -82086627 - ORR1E LTR MaLR -5 374 265 6 1122 395 310 144 86 chr5 70450655 70450697 -82086562 - ORR1E LTR MaLR -124 235 200 6 1122 893 18 9 0 chr5 70450697 70450808 -82086451 + (CA)n Simple_repeat Simple_repeat 2 113 0 6 1122 395 310 144 86 chr5 70450808 70450987 -82086272 - ORR1E LTR MaLR -160 199 1 6 1122 264 120 0 0 chr5 70451792 70451842 -82085417 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 6 1122 1127 251 77 36 chr5 70452164 70452552 -82084707 + Lx7 LINE L1 6958 7361 -335 6 1122 219 157 0 41 chr5 70452560 70452633 -82084626 + T-rich Low_complexity Low_complexity 1 70 0 6 1122 267 31 0 0 chr5 70453024 70453056 -82084203 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1122 25 51 0 0 chr5 70454457 70454496 -82082763 + AT_rich Low_complexity Low_complexity 1 39 0 6 1122 355 372 56 5 chr5 70456138 70456335 -82080924 + MTEb LTR MaLR 5 211 -168 6 1122 1294 348 106 37 chr5 70456452 70457560 -82079699 + MTE-int LTR MaLR 2 1306 -274 6 1122 3849 144 27 8 chr5 70457560 70458230 -82079029 + Lx2 LINE L1 6315 6997 0 6 1122 1294 343 109 22 chr5 70458230 70458438 -82078821 + MTE-int LTR MaLR 1307 1533 -47 6 1122 483 349 45 13 chr5 70458471 70458695 -82078564 + MTEb LTR MaLR 1 231 -148 6 1122 249 289 82 0 chr5 70458741 70458838 -82078421 + L1M5 LINE L1 5781 5885 -559 6 1122 300 339 37 2 chr5 70458991 70459101 -82078158 - PB1D7 SINE Alu -5 115 1 6 1122 216 97 0 0 chr5 70459411 70459442 -82077817 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1122 274 266 0 0 chr5 70460368 70460432 -82076827 - Lx8 LINE L1 -826 6647 6584 6 1122 21 57 0 0 chr5 70460650 70460685 -82076574 + AT_rich Low_complexity Low_complexity 1 35 0 6 1122 288 296 79 69 chr5 70461245 70461448 -82075811 - B3 SINE B2 -8 208 4 6 1122 1297 92 49 0 chr5 70462113 70462298 -82074961 + Lx LINE L1 5891 6084 -570 6 1122 35350 34 1 0 chr5 70462295 70468132 -82069127 + L1Md_T LINE L1 1 5589 -297 6 1122 8888 5 5 0 chr5 70468132 70469139 -82068120 + L1Md_T LINE L1 5590 6585 0 6 1122 3666 112 17 45 chr5 70469139 70469735 -82067524 + Lx LINE L1 6074 6652 -2 6 1122 286 229 0 97 chr5 70469735 70469826 -82067433 + A-rich Low_complexity Low_complexity 17 95 0 6 1122 1140 88 0 0 chr5 70469826 70469973 -82067286 + B1_Mus2 SINE Alu 1 147 0 6 1122 286 229 0 97 chr5 70469973 70470009 -82067250 + A-rich Low_complexity Low_complexity 96 131 0 6 1122 2081 40 0 0 chr5 70470428 70470679 -82066580 + L1Md_A LINE L1 6331 6581 -1 6 1122 798 310 77 4 chr5 70471976 70472235 -82065024 + Lx8 LINE L1 7053 7330 -143 6 1122 275 65 22 0 chr5 70472798 70472844 -82064415 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6 1122 332 201 63 63 chr5 70472844 70473035 -82064224 - RMER17C LTR ERVK -133 277 87 6 1122 2981 170 9 8 chr5 70473260 70473787 -82063472 - Lx3B LINE L1 -247 5630 5103 6 1122 5379 141 34 26 chr5 70473787 70474218 -82063041 + Lx3B LINE L1 5645 6100 -873 6 1122 2694 125 10 0 chr5 70474218 70474619 -82062640 - MTB_Mm LTR MaLR 0 407 3 6 1122 5379 141 34 26 chr5 70474619 70475111 -82062148 + Lx3B LINE L1 6101 6575 -398 6 1122 489 227 119 38 chr5 70475119 70475279 -82061980 + Lx2B LINE L1 6818 6990 -10 6 1122 2125 122 3 59 chr5 70476629 70476970 -82060289 - ORR1A2 LTR MaLR -5 322 1 6 1122 762 180 171 21 chr5 70477030 70477223 -82060036 + URR1B DNA MER1_type 1 222 -3 6 1122 26439 148 17 21 chr5 70478161 70484368 -82052891 - L1_Mus3 LINE L1 -2 6636 465 6 1122 458 311 46 38 chr5 70485469 70485730 -82051529 + L1MA6 LINE L1 6035 6297 -3 6 1122 266 364 65 50 chr5 70486307 70486567 -82050692 + MLT1B LTR MaLR 76 339 -51 6 1122 450 0 0 0 chr5 70486646 70486696 -82050563 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1122 291 356 97 65 chr5 70487325 70487604 -82049655 - MLT2D LTR ERVL -4 410 123 6 1122 21 36 0 0 chr5 70487614 70487642 -82049617 + AT_rich Low_complexity Low_complexity 1 28 0 6 1122 293 303 98 72 chr5 70487649 70487802 -82049457 - MTE2a LTR MaLR -124 255 99 6 1122 324 0 0 0 chr5 70487955 70487991 -82049268 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1122 342 0 0 0 chr5 70487991 70488028 -82049231 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1122 339 174 0 0 chr5 70488105 70488191 -82049068 + CT-rich Low_complexity Low_complexity 2 87 0 6 1122 1644 205 30 19 chr5 70488342 70488705 -82048554 + ORR1B2 LTR MaLR 1 367 0 6 1122 3399 80 13 0 chr5 70489528 70489980 -82047279 - L1_Mus1 LINE L1 0 6567 6110 6 1122 377 290 97 0 chr5 70489980 70490135 -82047124 - L1Md_F LINE L1 -5772 747 578 6 1122 427 295 47 6 chr5 70490193 70490409 -82046850 - L1VL1 LINE L1 -6024 398 54 6 1122 225 164 0 187 chr5 70490562 70490637 -82046622 + MLT2D LTR ERVL 489 549 -11 6 1122 1214 311 16 54 chr5 70490881 70491323 -82045936 - Lx6 LINE L1 -2 7458 7034 6 1122 30866 126 30 24 chr5 70491528 70493267 -82043992 + L1Md_F2 LINE L1 214 1969 -3914 6 1122 258 32 0 0 chr5 70493267 70493298 -82043961 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1122 30866 88 6 8 chr5 70493298 70496928 -82040331 + L1Md_F2 LINE L1 1970 5585 -298 6 1122 7266 90 1 13 chr5 70496928 70497932 -82039327 + L1Md_F2 LINE L1 5587 6578 -4 6 1122 380 246 184 0 chr5 70498247 70498361 -82038898 - B4 SINE B4 -141 151 17 6 1122 198 0 0 0 chr5 70498363 70498385 -82038874 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1122 22 56 0 0 chr5 70498428 70498464 -82038795 + AT_rich Low_complexity Low_complexity 1 36 0 6 1122 230 297 0 26 chr5 70498660 70498736 -82038523 + CT-rich Low_complexity Low_complexity 2 75 0 6 1122 229 417 28 0 chr5 70499067 70499175 -82038084 - PB1D10 SINE Alu -6 111 1 6 1122 278 333 0 0 chr5 70500003 70500081 -82037178 - RSINE1 SINE B4 -73 92 15 1 1122 30 89 0 0 chr5 70500152 70500231 -82037028 + AT_rich Low_complexity Low_complexity 1 79 0 2 1122 372 333 54 54 chr5 70500265 70500414 -82036845 + RSINE1 SINE B4 11 159 -6 3 1122 25 51 0 0 chr5 70500466 70500505 -82036754 + AT_rich Low_complexity Low_complexity 1 39 0 4 1122 829 212 9 58 chr5 70500580 70500805 -82036454 + L1_Mur3 LINE L1 4951 5164 -716 5 1122 443 208 257 0 chr5 70500816 70500884 -82036375 + Lx LINE L1 6474 6555 -99 6 1122 192 40 0 0 chr5 70500884 70500909 -82036350 + (AGGGGG)n Simple_repeat Simple_repeat 3 27 0 7 1122 443 208 257 0 chr5 70500909 70500984 -82036275 + Lx LINE L1 6556 6652 -2 6 1122 737 239 8 0 chr5 70500986 70501235 -82036024 + GA-rich Low_complexity Low_complexity 1 251 0 8 1122 28 29 0 0 chr5 70501455 70501490 -82035769 + AT_rich Low_complexity Low_complexity 1 35 0 9 1122 255 216 0 6 chr5 70501490 70501555 -82035704 - Lx3B LINE L1 -1 6975 6914 1 1122 350 234 81 40 chr5 70501644 70501818 -82035441 - L1MDa LINE L1 -5360 1273 1093 1 1122 208 176 20 0 chr5 70501911 70501962 -82035297 + A-rich Low_complexity Low_complexity 3 54 0 1 1122 477 319 24 65 chr5 70502583 70502626 -82034633 - Ricksha_0 DNA MuDR -335 1398 1357 1 1122 600 53 0 0 chr5 70502626 70502702 -82034557 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1122 477 319 24 65 chr5 70502702 70502906 -82034353 - Ricksha_0 DNA MuDR -377 1356 1161 1 1122 707 301 27 45 chr5 70502926 70503149 -82034110 - ID_B1 SINE B4 -5 219 1 1 1122 316 284 51 8 chr5 70503151 70503268 -82033991 - Ricksha_0 DNA MuDR -563 1163 1042 1 1122 2342 294 79 48 chr5 70503328 70503480 -82033779 - L1MC3 LINE L1 -1143 6642 6485 1 1122 1872 183 68 10 chr5 70503480 70503878 -82033381 + MTC LTR MaLR 1 421 0 1 1122 2342 294 79 48 chr5 70503878 70505073 -82032186 - L1MC3 LINE L1 -1301 6484 5254 1 1122 358 294 102 55 chr5 70505180 70505516 -82031743 - MT2A LTR ERVL -1 566 181 1 1122 1729 262 38 16 chr5 70505625 70506071 -82031188 - RMER20B LTR ERVK -77 550 95 1 1122 21 36 0 0 chr5 70506168 70506196 -82031063 + AT_rich Low_complexity Low_complexity 1 28 0 2 1122 2941 73 27 7 chr5 70506279 70506692 -82030567 - BGLII LTR ERVK 0 421 1 2 1122 924 143 0 0 chr5 70507300 70507454 -82029805 + (GGAA)n Simple_repeat Simple_repeat 2 155 0 2 1122 450 0 0 0 chr5 70507454 70507504 -82029755 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1122 396 373 41 32 chr5 70507681 70507900 -82029359 + MLT1D LTR MaLR 229 449 -56 2 1122 337 355 9 9 chr5 70507897 70508005 -82029254 - RSINE1 SINE B4 -56 109 2 2 1122 3296 70 47 21 chr5 70508264 70508734 -82028525 + RLTR45 LTR ERVK 1 482 0 2 1122 835 137 0 0 chr5 70508734 70508858 -82028401 + RLTR45-int LTR ERVK 1 124 -7120 2 1122 6793 43 14 27 chr5 70508858 70509760 -82027499 + RLTR45-int LTR ERVK 2321 3211 -4033 2 1122 4428 56 7 15 chr5 70509750 70510350 -82026909 + RLTR45-int LTR ERVK 3392 3986 -3258 2 1122 9322 50 19 7 chr5 70510343 70512455 -82024804 + RLTR45-int LTR ERVK 5065 7242 -2 2 1122 3868 95 84 0 chr5 70512547 70513127 -82024132 - Lx3A LINE L1 -5 6976 6348 2 1122 3076 169 103 57 chr5 70513277 70513624 -82023635 + RMER6A LTR ERVK 7 383 -373 2 1122 540 0 0 0 chr5 70513624 70513684 -82023575 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1122 3076 169 103 57 chr5 70513684 70514053 -82023206 + RMER6A LTR ERVK 384 755 -1 2 1122 1253 255 62 43 chr5 70515023 70515462 -82021797 + Lx9 LINE L1 7055 7501 -143 3 1122 3349 102 8 12 chr5 70515581 70516078 -82021181 + L1_Mus3 LINE L1 6137 6631 -7 3 1123 23 0 0 0 chr5 70517373 70517396 -82019863 + AT_rich Low_complexity Low_complexity 1 23 0 3 1123 35 41 0 0 chr5 70517458 70517507 -82019752 + AT_rich Low_complexity Low_complexity 1 49 0 3 1123 222 91 0 0 chr5 70518757 70518790 -82018469 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1123 545 350 50 60 chr5 70518852 70519153 -82018106 - MLT2B1 LTR ERVL -94 426 129 3 1123 7606 84 5 0 chr5 70519153 70520558 -82016701 + L1_Mus2 LINE L1 5156 6566 0 3 1123 184 314 43 0 chr5 70521484 70521554 -82015705 - L2 LINE L2 -1051 2368 2296 3 1123 522 0 0 0 chr5 70521700 70521758 -82015501 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1123 22 0 0 0 chr5 70521860 70521882 -82015377 + AT_rich Low_complexity Low_complexity 1 22 0 3 1123 460 304 64 107 chr5 70521897 70522177 -82015082 - Lx6 LINE L1 -177 7283 7016 4 1123 1320 237 25 39 chr5 70522196 70522560 -82014699 - Lx3C LINE L1 -2 6974 6616 4 1123 1036 259 55 36 chr5 70522561 70522926 -82014333 - Lx6 LINE L1 -437 7023 6652 4 1123 618 329 86 42 chr5 70523236 70523668 -82013591 + MLT1D LTR MaLR 7 457 -48 4 1123 1021 323 40 87 chr5 70523796 70524654 -82012605 - Lx8 LINE L1 -31 7442 6627 4 1123 201 39 0 0 chr5 70524757 70524783 -82012476 + (CA)n Simple_repeat Simple_repeat 1 26 0 4 1123 4095 48 8 0 chr5 70524918 70525420 -82011839 + L1Md_F2 LINE L1 6074 6579 -3 4 1123 556 305 45 5 chr5 70525481 70525679 -82011580 - B3 SINE B2 -6 210 5 4 1123 28 29 0 0 chr5 70525689 70525724 -82011535 + AT_rich Low_complexity Low_complexity 1 35 0 4 1123 1209 113 0 31 chr5 70526368 70526560 -82010699 + B2_Mm2 SINE B2 2 187 -8 4 1123 1147 50 0 0 chr5 70526953 70527092 -82010167 + B1_Mm SINE Alu 2 140 -7 4 1123 315 0 0 0 chr5 70527094 70527129 -82010130 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 5 1123 621 210 9 12 chr5 70527560 70527706 -82009553 + B1_Mus2 SINE Alu 5 148 -1 5 1123 802 0 20 0 chr5 70527707 70527805 -82009454 + (CA)n Simple_repeat Simple_repeat 1 100 0 5 1123 189 0 0 0 chr5 70527805 70527825 -82009434 + (TA)n Simple_repeat Simple_repeat 1 21 0 5 1123 349 145 0 26 chr5 70528538 70528616 -82008643 + (TA)n Simple_repeat Simple_repeat 1 76 0 5 1123 258 105 0 0 chr5 70529947 70529985 -82007274 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 1123 226 214 0 0 chr5 70530473 70530515 -82006744 + G-rich Low_complexity Low_complexity 2 43 0 5 1123 21 71 0 0 chr5 70530554 70530596 -82006663 + AT_rich Low_complexity Low_complexity 1 42 0 5 1123 244 333 129 0 chr5 70531613 70531745 -82005514 + RMER15 LTR ERVL 426 574 -1 5 1123 432 0 0 0 chr5 70532116 70532164 -82005095 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 5 1123 504 0 0 0 chr5 70532164 70532219 -82005040 + (TTC)n Simple_repeat Simple_repeat 3 58 0 6 1123 432 55 0 0 chr5 70532219 70532274 -82004985 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 1123 415 295 477 0 chr5 70532468 70532701 -82004558 + ORR1C2 LTR MaLR 3 346 -38 6 1123 205 279 0 0 chr5 70533198 70533259 -82004000 + (TTA)n Simple_repeat Simple_repeat 3 63 0 6 1123 203 204 0 18 chr5 70533392 70533447 -82003812 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 6 1123 366 23 0 0 chr5 70534234 70534277 -82002982 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 6 1123 3534 207 74 13 chr5 70534300 70535046 -82002213 - Lx5 LINE L1 0 7050 6260 6 1123 287 401 45 13 chr5 70535522 70535676 -82001583 + RSINE1 SINE B4 2 160 -5 6 1123 542 41 14 0 chr5 70535676 70535749 -82001510 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1123 32 43 0 0 chr5 70537766 70537812 -81999447 + AT_rich Low_complexity Low_complexity 1 46 0 6 1123 612 81 0 0 chr5 70537936 70538023 -81999236 + (CA)n Simple_repeat Simple_repeat 2 88 0 7 1123 1022 345 91 31 chr5 70538095 70538812 -81998447 + Lx9 LINE L1 6435 7194 -450 7 1123 234 267 56 19 chr5 70538861 70538968 -81998291 - MER96B DNA hAT -42 375 265 7 1123 492 243 269 39 chr5 70539003 70539336 -81997923 + MTD LTR MaLR 11 419 0 7 1123 392 0 0 20 chr5 70539751 70539800 -81997459 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 7 1123 1022 112 0 0 chr5 70539801 70539944 -81997315 - B1_Mus1 SINE Alu -4 144 2 7 1123 29 0 0 0 chr5 70539944 70539973 -81997286 + AT_rich Low_complexity Low_complexity 1 29 0 7 1123 240 35 0 0 chr5 70540085 70540114 -81997145 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 7 1123 827 150 54 0 chr5 70540114 70540261 -81996998 - B2_Mm2 SINE B2 -34 161 7 7 1123 609 40 0 0 chr5 70540770 70540846 -81996413 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 1123 806 344 42 8 chr5 70543125 70543503 -81993756 + Lx8 LINE L1 6122 6512 -961 8 1123 804 340 131 19 chr5 70543525 70544053 -81993206 + Lx8 LINE L1 6568 7154 -319 8 1123 1603 234 51 23 chr5 70544094 70544487 -81992772 - Lx3C LINE L1 -2 6974 6571 8 1123 1759 193 44 33 chr5 70544572 70545254 -81992005 + L1_Mur2 LINE L1 889 1578 -4299 8 1123 4331 205 54 0 chr5 70545256 70546090 -81991169 + Lx5 LINE L1 6158 7036 -14 8 1123 396 0 0 0 chr5 70546090 70546134 -81991125 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 8 1123 2524 176 44 12 chr5 70547275 70547770 -81989489 + Lx2B LINE L1 6489 6999 -1 8 1123 1614 330 73 64 chr5 70547777 70548355 -81988904 + MTE-int LTR MaLR 680 1265 -315 8 1123 2166 127 9 60 chr5 70548355 70548775 -81988484 - Lx3B LINE L1 0 6973 6575 8 1123 1614 330 73 64 chr5 70548775 70549059 -81988200 + MTE-int LTR MaLR 1266 1550 -30 8 1123 444 161 0 0 chr5 70549208 70549289 -81987970 + (TA)n Simple_repeat Simple_repeat 2 82 0 8 1123 256 33 0 0 chr5 70549289 70549319 -81987940 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1123 211 213 20 78 chr5 70549445 70549547 -81987712 + A-rich Low_complexity Low_complexity 3 98 0 9 1123 984 137 0 0 chr5 70550273 70550419 -81986840 + B1_Mus1 SINE Alu 1 146 -2 9 1123 304 196 0 0 chr5 70550436 70550482 -81986777 - HAL1-3A_ME LINE L1 -838 2020 1975 9 1123 344 209 12 0 chr5 70550482 70550568 -81986691 + (TA)n Simple_repeat Simple_repeat 2 88 0 9 1123 327 368 65 76 chr5 70550628 70550890 -81986369 - B4 SINE B4 0 292 34 9 1123 23 33 0 0 chr5 70551343 70551373 -81985886 + AT_rich Low_complexity Low_complexity 1 30 0 9 1123 1129 75 0 0 chr5 70551450 70551597 -81985662 + B1_Mus2 SINE Alu 1 147 0 9 1123 219 184 20 0 chr5 70551849 70551898 -81985361 + (TTG)n Simple_repeat Simple_repeat 2 51 0 9 1123 243 274 22 56 chr5 70552081 70552170 -81985089 - Arthur1 DNA Tip100 -1305 2642 2557 9 1123 243 179 0 0 chr5 70552934 70552973 -81984286 - Lx2B LINE L1 -451 6549 6511 9 1123 448 206 65 0 chr5 70552958 70553050 -81984209 + Lx2B LINE L1 6529 6626 -374 9 1123 469 169 34 8 chr5 70553050 70553169 -81984090 + Lx2A1 LINE L1 6886 7007 -1 1 1123 251 246 18 0 chr5 70553172 70553229 -81984030 - MTD LTR MaLR -36 383 326 1 1123 884 122 192 0 chr5 70553239 70553411 -81983848 - Lx2A1 LINE L1 -1019 5989 5785 1 1123 1391 219 6 13 chr5 70553440 70553754 -81983505 - L1_Mur2 LINE L1 -3191 2686 2375 1 1123 1440 143 4 0 chr5 70553758 70553988 -81983271 - Lx2 LINE L1 -2 6995 6765 1 1123 6339 166 22 1 chr5 70553988 70555324 -81981935 - Lx2 LINE L1 -363 6634 5297 1 1123 2674 47 0 6 chr5 70555324 70555665 -81981594 - L1Md_F3 LINE L1 -1 6583 6245 1 1123 5973 189 82 2 chr5 70555665 70556309 -81980950 - Lx2 LINE L1 -590 5296 4554 1 1123 508 207 25 0 chr5 70556305 70556426 -81980833 - Lx2 LINE L1 -3492 2385 2262 1 1123 3262 254 71 31 chr5 70556422 70557279 -81979980 + Lx5 LINE L1 6142 7032 -18 1 1123 275 314 24 5 chr5 70558061 70558164 -81979095 + MIRc SINE MIR 5 110 -158 1 1123 337 270 54 23 chr5 70558771 70558900 -81978359 + L1MCc LINE L1 103 235 -6188 1 1123 252 342 0 37 chr5 70559189 70559271 -81977988 + MLT1A0 LTR MaLR 47 125 -240 1 1123 549 129 0 0 chr5 70560390 70560483 -81976776 + (GA)n Simple_repeat Simple_repeat 2 94 0 1 1123 329 436 0 47 chr5 70562241 70562412 -81974847 - RSINE1 SINE B4 0 165 3 1 1123 45 34 0 0 chr5 70562793 70562852 -81974407 + AT_rich Low_complexity Low_complexity 1 59 0 1 1123 4167 84 80 5 chr5 70562867 70563468 -81973791 - L1_Mus3 LINE L1 0 6638 5993 1 1123 2762 105 0 2 chr5 70563488 70563888 -81973371 + L1_Mus3 LINE L1 5588 5986 -652 1 1123 634 221 0 8 chr5 70564657 70564789 -81972470 + L1_Mur3 LINE L1 1848 1978 -3902 1 1123 678 103 0 0 chr5 70564786 70564883 -81972376 - Lx LINE L1 -261 6393 6297 1 1123 752 193 164 36 chr5 70564866 70565086 -81972173 + Lx2 LINE L1 6742 6989 -8 1 1123 345 235 0 0 chr5 70565107 70565192 -81972067 + L1_Mur3 LINE L1 1965 2049 -3828 1 1123 213 226 0 0 chr5 70565228 70565281 -81971978 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1123 402 271 198 25 chr5 70565281 70565478 -81971781 + HAL1-3A_ME LINE L1 1976 2206 -652 1 1123 284 148 0 16 chr5 70565481 70565543 -81971716 + GA-rich Low_complexity Low_complexity 2 62 0 1 1123 1690 228 40 16 chr5 70565547 70565993 -81971266 + L1_Mur3 LINE L1 2087 2543 -3337 1 1123 308 130 0 0 chr5 70566016 70566062 -81971197 + HAL1-3A_ME LINE L1 1967 2012 -846 1 1123 633 236 60 6 chr5 70566150 70566316 -81970943 - L1_Mur3 LINE L1 -3601 2279 2105 1 1123 11498 197 42 23 chr5 70566306 70569124 -81968135 + L1_Mur3 LINE L1 2539 5409 -471 1 1123 1386 152 0 0 chr5 70569122 70569365 -81967894 + L1_Mur2 LINE L1 4182 4424 -1453 1 1123 8635 114 32 8 chr5 70569365 70571533 -81965726 - L1VL2 LINE L1 -1337 2278 67 1 1123 917 248 21 25 chr5 70571751 70571987 -81965272 - Tigger12 DNA MER2_type -1168 791 557 1 1123 23 0 0 0 chr5 70572034 70572057 -81965202 + AT_rich Low_complexity Low_complexity 1 23 0 1 1123 436 315 26 26 chr5 70573701 70573854 -81963405 - RSINE1 SINE B4 -12 153 1 1 1123 180 77 0 0 chr5 70573963 70573989 -81963270 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1123 20883 25 0 0 chr5 70573991 70577100 -81960159 - L1Md_T LINE L1 0 6582 3474 1 1123 506 384 40 33 chr5 70577257 70577555 -81959704 + MTC LTR MaLR 1 300 -121 1 1123 765 180 97 67 chr5 70577555 70577793 -81959466 - RLTR25B LTR ERVK 0 1028 784 1 1123 230 173 18 55 chr5 70577884 70577939 -81959320 - U7 snRNA snRNA -3 60 8 1 1123 260 190 34 17 chr5 70578025 70578084 -81959175 - U7 snRNA snRNA -2 61 2 1 1123 1923 226 184 32 chr5 70578087 70578249 -81959010 - RLTR25B LTR ERVK -226 802 624 1 1123 540 56 11 22 chr5 70578249 70578340 -81958919 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 1123 1923 226 184 32 chr5 70578340 70578823 -81958436 - RLTR25B LTR ERVK -405 623 60 1 1123 268 307 57 33 chr5 70578783 70578933 -81958326 + ORR1E LTR MaLR 214 364 -15 1 1123 216 306 0 27 chr5 70580145 70580219 -81957040 + A-rich Low_complexity Low_complexity 2 73 0 1 1123 235 250 33 0 chr5 70580429 70580521 -81956738 + GA-rich Low_complexity Low_complexity 2 96 0 1 1123 901 80 62 49 chr5 70580601 70580745 -81956514 + B1_Mus1 SINE Alu 1 146 -2 1 1123 519 334 60 48 chr5 70580964 70581316 -81955943 - MLT1B LTR MaLR -34 356 1 1 1123 276 350 22 89 chr5 70582657 70582792 -81954467 - B4A SINE B4 -140 152 27 1 1123 23 54 0 0 chr5 70583285 70583322 -81953937 + AT_rich Low_complexity Low_complexity 1 37 0 1 1123 28 61 0 0 chr5 70583588 70583637 -81953622 + AT_rich Low_complexity Low_complexity 1 49 0 1 1123 2167 62 37 7 chr5 70583859 70584180 -81953079 + IAPLTR2b LTR ERVK 1 357 0 1 1123 4460 217 34 29 chr5 70584386 70585439 -81951820 - Lx2B LINE L1 -5 6995 5937 1 1123 22 0 0 0 chr5 70585815 70585837 -81951422 + AT_rich Low_complexity Low_complexity 1 22 0 1 1123 2744 181 56 7 chr5 70586555 70587146 -81950113 + L1VL2 LINE L1 426 1045 -5290 1 1123 9266 173 16 28 chr5 70587182 70588572 -81948687 + L1_Mur1 LINE L1 2023 3409 -2477 1 1123 4032 56 87 0 chr5 70588572 70589091 -81948168 - LTRIS2 LTR ERV1 0 564 1 1 1123 9266 173 16 28 chr5 70589091 70589646 -81947613 + L1_Mur1 LINE L1 3410 3945 -1941 1 1123 5916 173 48 15 chr5 70589647 70590095 -81947164 + Lx2 LINE L1 5811 6272 -725 1 1123 2330 125 22 77 chr5 70590095 70590511 -81946748 + RLTR9C LTR ERVK 1 393 0 1 1123 5916 173 48 15 chr5 70590511 70591211 -81946048 + Lx2 LINE L1 6273 6997 0 1 1123 462 79 0 0 chr5 70591661 70591724 -81945535 + (TA)n Simple_repeat Simple_repeat 2 64 0 1 1123 1594 214 97 171 chr5 70593264 70593923 -81943336 - RMER19C LTR ERVK 0 611 2 1 1123 759 116 31 0 chr5 70594230 70594421 -81942838 - L1_Mus4 LINE L1 0 6636 6496 1 1123 2479 166 47 0 chr5 70594421 70594849 -81942410 - RLTR20B2 LTR ERVK -112 448 1 1 1123 300 27 0 0 chr5 70594882 70594919 -81942340 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1123 1371 164 65 18 chr5 70594946 70595225 -81942034 - RMER12 LTR ERVK -540 782 491 1 1123 37917 30 0 0 chr5 70595227 70601667 -81935592 - L1Md_T LINE L1 0 6585 48 1 1123 21 0 0 0 chr5 70602015 70602036 -81935223 + AT_rich Low_complexity Low_complexity 1 21 0 1 1123 267 114 0 0 chr5 70602055 70602099 -81935160 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1123 255 303 19 66 chr5 70602267 70602373 -81934886 - B4A SINE B4 -187 105 5 1 1123 2895 264 28 81 chr5 70603068 70603421 -81933838 - Lx7 LINE L1 0 7696 7357 1 1123 519 17 0 0 chr5 70603421 70603481 -81933778 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1123 2895 264 28 81 chr5 70603481 70603968 -81933291 - Lx7 LINE L1 -340 7356 6904 1 1123 219 88 0 0 chr5 70603968 70604002 -81933257 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 1 1123 2895 264 28 81 chr5 70604002 70604211 -81933048 - Lx7 LINE L1 -793 6903 6702 1 1123 818 257 48 19 chr5 70604238 70604444 -81932815 - Lx7 LINE L1 -1165 6531 6320 1 1123 392 247 104 6 chr5 70604443 70604606 -81932653 + Lx7 LINE L1 5074 5252 -628 1 1123 1695 224 52 21 chr5 70604594 70605073 -81932186 + Lx7 LINE L1 5818 6311 -1385 1 1123 1059 119 0 0 chr5 70605085 70605261 -81931998 + (TCTCC)n Simple_repeat Simple_repeat 1 176 0 1 1123 654 93 0 0 chr5 70605264 70605372 -81931887 + (TC)n Simple_repeat Simple_repeat 1 108 0 1 1123 1919 145 13 3 chr5 70605390 70605702 -81931557 - Lx3C LINE L1 -272 6704 6390 1 1123 8181 137 48 8 chr5 70605699 70607224 -81930035 - Lx2 LINE L1 0 6997 5390 1 1123 438 271 22 43 chr5 70607224 70607363 -81929896 - MT2A LTR ERVL -397 136 1 1 1123 1099 45 0 0 chr5 70607698 70607831 -81929428 - L1_Mus1 LINE L1 -143 6424 6292 1 1123 742 49 0 0 chr5 70607831 70607933 -81929326 + L1_Mus1 LINE L1 6465 6566 -1 1 1123 552 30 0 0 chr5 70608077 70608143 -81929116 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 1 1123 2760 54 0 3 chr5 70608217 70608569 -81928690 + L1Md_F2 LINE L1 6220 6570 -12 1 1123 23 0 0 0 chr5 70608795 70608818 -81928441 + AT_rich Low_complexity Low_complexity 1 23 0 1 1123 231 36 0 0 chr5 70608835 70608863 -81928396 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1123 29 47 0 0 chr5 70609026 70609069 -81928190 + AT_rich Low_complexity Low_complexity 1 43 0 1 1123 534 305 23 41 chr5 70609285 70609504 -81927755 - B3 SINE B2 -1 215 1 1 1123 516 239 26 84 chr5 70609570 70609725 -81927534 - B1_Mur2 SINE Alu 0 150 5 1 1123 380 265 12 0 chr5 70610518 70610601 -81926658 - Lx8 LINE L1 -1175 6298 6215 1 1123 3041 174 41 111 chr5 70610611 70611443 -81925816 + L1_Mur2 LINE L1 3295 4068 -1809 1 1123 3908 266 64 12 chr5 70611441 70612512 -81924747 + Lx5 LINE L1 5906 7032 -18 1 1123 351 0 0 0 chr5 70612516 70612555 -81924704 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 1 1123 761 298 125 3 chr5 70612835 70613195 -81924064 + Lx8 LINE L1 6753 7156 -317 1 1123 405 0 0 0 chr5 70613443 70613488 -81923771 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1123 252 167 0 0 chr5 70613666 70613714 -81923545 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1123 189 121 0 0 chr5 70614685 70614718 -81922541 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1123 426 257 35 49 chr5 70614905 70615048 -81922211 + Lx6 LINE L1 7319 7459 -1 1 1123 792 173 0 0 chr5 70615068 70615218 -81922041 + GA-rich Low_complexity Low_complexity 2 151 0 1 1123 1135 46 13 7 chr5 70615220 70615374 -81921885 + (GAAA)n Simple_repeat Simple_repeat 4 158 0 1 1123 273 345 18 0 chr5 70615410 70615523 -81921736 + MLT1E3 LTR MaLR 79 193 -434 1 1123 336 369 39 86 chr5 70615529 70615784 -81921475 + MLT1E3 LTR MaLR 307 549 -131 1 1123 35 54 0 0 chr5 70616368 70616424 -81920835 + AT_rich Low_complexity Low_complexity 1 56 0 1 1123 242 57 0 0 chr5 70616838 70616873 -81920386 + L1_Mus2 LINE L1 5768 5802 -836 1 1123 1337 39 0 0 chr5 70616873 70617029 -81920230 + L1Md_F3 LINE L1 5431 5586 -297 1 1123 8261 39 2 1 chr5 70617029 70618026 -81919233 + L1Md_F3 LINE L1 5587 6584 0 1 1123 2399 73 6 0 chr5 70618027 70618344 -81918915 + L1_Mus2 LINE L1 5800 6118 -448 1 1123 198 0 0 0 chr5 70618930 70618952 -81918307 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1123 456 356 71 60 chr5 70619363 70619629 -81917630 - B4 SINE B4 -18 274 6 1 1123 528 59 0 0 chr5 70619802 70619870 -81917389 + (TTTC)n Simple_repeat Simple_repeat 1 68 0 1 1123 4409 88 40 2 chr5 70619903 70620528 -81916731 - L1_Mus1 LINE L1 0 6567 5919 1 1123 682 219 10 26 chr5 70620528 70620726 -81916533 + L1Md_F2 LINE L1 230 599 -6125 1 1123 30907 73 4 3 chr5 70620720 70624932 -81912327 + L1Md_F2 LINE L1 1372 5586 -297 1 1123 7324 78 9 4 chr5 70624933 70625923 -81911336 + L1Md_F2 LINE L1 5588 6582 0 1 1123 1342 142 46 25 chr5 70625962 70626201 -81911058 - RLTR11A2 LTR ERVK 0 527 284 1 1123 207 0 0 0 chr5 70626226 70626249 -81911010 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1123 2958 147 51 7 chr5 70626252 70626938 -81910321 - Lx2A LINE L1 0 7008 6219 2 1123 1056 236 71 8 chr5 70626977 70627229 -81910030 - RLTR11A2 LTR ERVK -259 268 1 1 1123 319 325 83 71 chr5 70627368 70627620 -81909639 + RLTR12B LTR ERVK 17 271 -257 2 1123 1780 131 35 0 chr5 70628163 70628453 -81908806 + L1_Mus3 LINE L1 6336 6635 -3 2 1123 240 143 0 0 chr5 70628669 70628711 -81908548 + (TATG)n Simple_repeat Simple_repeat 2 43 0 2 1123 548 156 9 35 chr5 70628915 70629028 -81908231 - RMER6B LTR ERVK -5 456 347 2 1123 1961 129 18 24 chr5 70629984 70630318 -81906941 + Lx LINE L1 6310 6641 -13 2 1123 391 349 110 11 chr5 70630663 70631017 -81906242 - L1M5 LINE L1 -815 5331 4943 2 1123 394 200 13 13 chr5 70631041 70631117 -81906142 - ID4 SINE ID -1 82 7 2 1123 582 15 0 0 chr5 70631199 70631266 -81905993 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1123 280 366 57 38 chr5 70631858 70632017 -81905242 + RSINE1 SINE B4 4 165 0 2 1123 414 0 0 0 chr5 70632018 70632064 -81905195 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1123 237 139 0 0 chr5 70632064 70632107 -81905152 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1123 22 56 0 0 chr5 70632133 70632169 -81905090 + AT_rich Low_complexity Low_complexity 1 36 0 2 1123 510 311 17 40 chr5 70632282 70632456 -81904803 - B3A SINE B2 -2 196 27 2 1123 31836 98 5 8 chr5 70632577 70634629 -81902630 - L1_Mus1 LINE L1 0 6567 4543 2 1123 1615 129 100 148 chr5 70634629 70635128 -81902131 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1123 31836 97 5 9 chr5 70635128 70635914 -81901345 - L1_Mus1 LINE L1 -1341 4542 3764 2 1123 2848 48 17 8 chr5 70635914 70636268 -81900991 + IAPEY2_LTR LTR ERVK 1 357 0 2 1123 31836 97 5 9 chr5 70636268 70638048 -81899211 - L1_Mus1 LINE L1 -2120 3763 1966 2 1123 1151 68 12 0 chr5 70638048 70638209 -81899050 + (TTTC)n Simple_repeat Simple_repeat 4 166 0 2 1123 31836 92 92 11 chr5 70638209 70639822 -81897437 - L1_Mus1 LINE L1 -3918 1965 217 2 1123 29 28 0 0 chr5 70640496 70640532 -81896727 + AT_rich Low_complexity Low_complexity 1 36 0 2 1123 3655 131 28 22 chr5 70640904 70640990 -81896269 - Lx LINE L1 -1 6653 6569 2 1123 471 18 0 0 chr5 70640990 70641046 -81896213 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1123 3655 131 28 22 chr5 70641046 70641562 -81895697 - Lx LINE L1 -86 6568 6048 2 1123 588 242 33 0 chr5 70641626 70641746 -81895513 - B1_Mur1 SINE Alu -24 125 2 2 1123 1467 281 96 15 chr5 70641970 70642520 -81894739 + Lx6 LINE L1 6455 7434 -26 2 1123 655 42 14 144 chr5 70642520 70642659 -81894600 + L1_Mus3 LINE L1 6511 6631 -7 2 1123 297 0 0 0 chr5 70642951 70642984 -81894275 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1123 333 68 0 0 chr5 70643963 70644007 -81893252 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2 1123 22 88 0 0 chr5 70644249 70644306 -81892953 + AT_rich Low_complexity Low_complexity 1 57 0 2 1123 1511 179 80 35 chr5 70644886 70645198 -81892061 - ORR1A3 LTR MaLR 0 326 1 2 1123 996 78 8 0 chr5 70645998 70646127 -81891132 + B1_Mus1 SINE Alu 5 134 -14 2 1123 753 93 0 0 chr5 70646128 70646235 -81891024 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 2 1123 468 0 0 0 chr5 70646864 70646916 -81890343 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1123 1155 123 0 26 chr5 70647126 70647318 -81889941 - B2_Mm2 SINE B2 -6 189 3 2 1123 21 0 0 0 chr5 70647595 70647616 -81889643 + AT_rich Low_complexity Low_complexity 1 21 0 2 1124 3644 34 0 5 chr5 70648036 70648478 -81888781 + L1Md_F2 LINE L1 5147 5586 -297 2 1124 8042 45 2 1 chr5 70648478 70649470 -81887789 + L1Md_F2 LINE L1 5587 6579 -3 2 1124 1113 106 0 0 chr5 70650270 70650450 -81886809 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1124 27 62 0 0 chr5 70650452 70650500 -81886759 + AT_rich Low_complexity Low_complexity 1 48 0 2 1124 327 85 0 0 chr5 70651312 70651359 -81885900 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1124 1311 206 39 7 chr5 70652425 70652708 -81884551 + Lx6 LINE L1 6665 6956 -504 2 1124 377 194 117 0 chr5 70652705 70652808 -81884451 - Lx7 LINE L1 -1462 6234 6120 2 1124 454 326 30 0 chr5 70653476 70653611 -81883648 + ID_B1 SINE B4 19 157 -67 2 1124 1101 196 45 0 chr5 70653617 70653837 -81883422 + L1Md_F2 LINE L1 173 402 -6214 2 1124 26376 82 5 6 chr5 70653813 70657908 -81879351 + L1Md_F2 LINE L1 2206 6301 -281 2 1124 2609 78 3 9 chr5 70657908 70658255 -81879004 + IAPLTR4 LTR ERVK 1 345 0 2 1124 5533 78 0 7 chr5 70658255 70658271 -81878988 + L1Md_F2 LINE L1 6302 6314 -268 2 1124 2135 261 56 83 chr5 70658271 70659327 -81877932 + IAPLTR3-int LTR ERVK 19 952 -6629 2 1124 1178 207 104 78 chr5 70659439 70659901 -81877358 + RMER16-int LTR ERVK 251 623 -4783 2 1124 440 174 96 0 chr5 70659947 70660062 -81877197 + ETnERV3-int LTR ERVK 1724 1849 -5557 2 1124 291 267 0 65 chr5 70660073 70660165 -81877094 + ETnERV3-int LTR ERVK 2454 2539 -4867 2 1124 6724 108 53 7 chr5 70660177 70661545 -81875714 + ETnERV3-int LTR ERVK 2735 4271 -3135 2 1124 531 194 12 0 chr5 70661547 70661666 -81875593 + ETnERV3-int LTR ERVK 2357 2464 -2380 2 1124 792 93 17 8 chr5 70661683 70661802 -81875457 + IAPLTR3-int LTR ERVK 4530 4649 -2932 2 1124 6043 253 48 42 chr5 70661944 70664457 -81872802 + IAPLTR3-int LTR ERVK 4881 7296 -384 2 1124 2676 64 6 14 chr5 70664462 70664810 -81872449 + IAPLTR4 LTR ERVK 1 345 0 2 1124 1654 124 36 14 chr5 70664810 70665081 -81872178 + L1_Mus1 LINE L1 6289 6567 0 2 1124 239 235 0 0 chr5 70665325 70665376 -81871883 - Lx6 LINE L1 -738 6722 6672 2 1124 1033 275 81 42 chr5 70665412 70665769 -81871490 + Lx6 LINE L1 7090 7460 0 2 1124 789 11 0 0 chr5 70666148 70666238 -81871021 + (TC)n Simple_repeat Simple_repeat 1 90 0 2 1124 260 309 79 18 chr5 70666319 70666599 -81870660 - L1MB4 LINE L1 -16 6164 5868 2 1124 522 31 0 0 chr5 70668428 70668492 -81868767 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 2 1124 593 344 55 33 chr5 70668559 70668830 -81868429 - B4 SINE B4 -4 288 12 2 1124 295 316 222 63 chr5 70668899 70669088 -81868171 - B4A SINE B4 -73 219 1 2 1124 22 94 0 0 chr5 70669471 70669535 -81867724 + AT_rich Low_complexity Low_complexity 1 64 0 2 1124 5803 141 34 16 chr5 70669535 70670526 -81866733 - Lx3C LINE L1 -8 6968 5960 2 1124 3173 118 24 0 chr5 70670526 70671027 -81866232 + L1_Mur1 LINE L1 4683 5195 -691 2 1124 22 35 0 0 chr5 70671031 70671060 -81866199 + AT_rich Low_complexity Low_complexity 1 29 0 2 1124 325 326 39 132 chr5 70671586 70671742 -81865517 + Lx7 LINE L1 6017 6168 -1528 2 1124 297 0 0 0 chr5 70671742 70671775 -81865484 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1124 325 326 39 132 chr5 70671775 70671788 -81865471 + Lx7 LINE L1 6169 6175 -1521 2 1124 906 123 18 0 chr5 70671788 70671959 -81865300 + (TA)n Simple_repeat Simple_repeat 1 174 0 2 1124 325 326 39 132 chr5 70671959 70672219 -81865040 + Lx7 LINE L1 6176 6407 -1289 2 1124 3059 79 10 0 chr5 70672578 70672994 -81864265 + BGLII LTR ERVK 1 420 -1 2 1124 6992 73 6 37 chr5 70673264 70674213 -81863046 + L1_Mus1 LINE L1 5603 6522 -45 2 1124 1230 14 7 0 chr5 70674213 70674359 -81862900 - B1_Mus2 SINE Alu 0 147 1 2 1124 6992 73 6 37 chr5 70674359 70674404 -81862855 + L1_Mus1 LINE L1 6523 6566 -1 2 1124 470 147 34 0 chr5 70674544 70674655 -81862604 + RMER3D-int LTR ERVK 489 583 -2259 2 1124 715 162 8 63 chr5 70674655 70675039 -81862220 + GA-rich Low_complexity Low_complexity 1 362 0 2 1124 2521 187 83 68 chr5 70675064 70675740 -81861519 + RMER3D-int LTR ERVK 470 1679 -1163 2 1124 2810 199 112 48 chr5 70675745 70676721 -81860538 + MYSERV16_I-int LTR ERVK 1289 2326 0 2 1124 3041 89 2 2 chr5 70676721 70677139 -81860120 + BGLII LTR ERVK 4 421 0 2 1124 1505 302 48 12 chr5 70677146 70677712 -81859547 + Lx7 LINE L1 6782 7378 -318 2 1124 201 39 0 0 chr5 70677712 70677738 -81859521 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1124 203 246 0 0 chr5 70677863 70677928 -81859331 + T-rich Low_complexity Low_complexity 1 65 0 2 1124 303 280 0 62 chr5 70678146 70678226 -81859033 + RSINE1 SINE B4 42 116 -49 2 1124 260 324 14 0 chr5 70678275 70678346 -81858913 - B4A SINE B4 -215 77 6 2 1124 544 244 17 8 chr5 70678377 70678497 -81858762 + Lx9 LINE L1 6521 6641 -1003 2 1124 45 19 0 0 chr5 70678599 70678651 -81858608 + AT_rich Low_complexity Low_complexity 1 52 0 2 1124 273 313 48 44 chr5 70678733 70678960 -81858299 - L1M6 LINE L1 -5130 1366 1139 2 1124 27 73 0 0 chr5 70679082 70679137 -81858122 + AT_rich Low_complexity Low_complexity 1 55 0 2 1124 189 147 0 0 chr5 70679159 70679193 -81858066 + (CCA)n Simple_repeat Simple_repeat 3 36 0 2 1124 221 161 48 0 chr5 70679383 70679445 -81857814 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 2 1124 322 261 59 50 chr5 70679753 70679928 -81857331 + MLT1A0 LTR MaLR 43 217 -148 2 1124 255 297 42 42 chr5 70680019 70680114 -81857145 - MTEa LTR MaLR -6 373 279 2 1124 35903 31 1 8 chr5 70680230 70685226 -81852033 + L1Md_T LINE L1 633 5586 -297 2 1124 8196 37 3 0 chr5 70685227 70686218 -81851041 + L1Md_T LINE L1 5588 6581 -1 2 1124 1108 95 0 0 chr5 70686227 70686374 -81850885 + B1_Mus1 SINE Alu 2 148 0 2 1124 249 108 0 0 chr5 70686374 70686411 -81850848 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1124 542 302 47 56 chr5 70687210 70687424 -81849835 + B3A SINE B2 2 213 -3 2 1124 21 0 0 0 chr5 70687434 70687455 -81849804 + AT_rich Low_complexity Low_complexity 1 21 0 2 1124 261 312 8 121 chr5 70688342 70688466 -81848793 + PB1D10 SINE Alu 6 115 -2 2 1124 189 107 0 0 chr5 70688481 70688509 -81848750 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1124 400 331 57 14 chr5 70688790 70688931 -81848328 - B1_Mur2 SINE Alu 0 149 3 2 1124 578 254 59 18 chr5 70689017 70689184 -81848075 - B3 SINE B2 0 216 42 2 1124 645 79 0 0 chr5 70689185 70689286 -81847973 + (CA)n Simple_repeat Simple_repeat 2 102 0 2 1124 560 211 0 39 chr5 70689292 70689445 -81847814 - RMER10B LTR ERVL -52 346 200 2 1124 2616 149 0 67 chr5 70689603 70690064 -81847195 + RLTR23 LTR ERV1 1 430 0 2 1124 1720 156 29 39 chr5 70690177 70690591 -81846668 + RMER17C LTR ERVK 1 410 0 2 1124 1387 19 0 0 chr5 70690950 70691110 -81846149 - L1Md_F2 LINE L1 -828 5754 5595 2 1124 1936 53 0 67 chr5 70691113 70691398 -81845861 + L1Md_F3 LINE L1 6319 6584 0 2 1124 551 286 21 46 chr5 70691398 70691592 -81845667 - RMER17C LTR ERVK -221 189 1 2 1124 27 29 0 0 chr5 70692153 70692187 -81845072 + AT_rich Low_complexity Low_complexity 1 34 0 2 1124 366 224 80 53 chr5 70692891 70692961 -81844298 + RMER17C LTR ERVK 1 79 -331 2 1124 405 0 0 0 chr5 70692961 70693006 -81844253 + (TC)n Simple_repeat Simple_repeat 1 45 0 2 1124 366 224 80 53 chr5 70693006 70693086 -81844173 + RMER17C LTR ERVK 80 155 -255 2 1124 1692 278 95 25 chr5 70694002 70694652 -81842607 + Lx7 LINE L1 6952 7647 -49 2 1124 931 263 119 0 chr5 70694724 70694975 -81842284 - ORR1C2 LTR MaLR 0 384 104 3 1124 755 235 42 78 chr5 70694975 70695192 -81842067 + Lx5 LINE L1 6837 7045 -5 3 1124 636 14 0 0 chr5 70695525 70695598 -81841661 + (TTTTG)n Simple_repeat Simple_repeat 2 74 0 3 1124 22 35 0 0 chr5 70696144 70696173 -81841086 + AT_rich Low_complexity Low_complexity 1 29 0 3 1124 861 104 0 63 chr5 70696260 70696403 -81840856 + L1_Mus4 LINE L1 6286 6419 -217 3 1124 732 299 71 4 chr5 70696467 70696736 -81840523 - Lx7 LINE L1 -584 7112 6826 3 1124 727 232 21 21 chr5 70696753 70696995 -81840264 - L1_Mur3 LINE L1 -4292 1588 1347 3 1124 847 284 72 23 chr5 70697101 70697487 -81839772 - L1_Mur3 LINE L1 -6455 1273 869 3 1124 298 206 0 45 chr5 70697753 70697819 -81839440 + Lx8 LINE L1 6821 6883 -590 3 1124 627 301 141 12 chr5 70697817 70698059 -81839200 + Lx8 LINE L1 7022 7294 -179 3 1124 33 43 0 0 chr5 70698922 70698969 -81838290 + AT_rich Low_complexity Low_complexity 1 47 0 3 1124 1612 178 31 25 chr5 70698988 70699310 -81837949 + RMER6B LTR ERVK 138 461 0 3 1124 3668 226 13 5 chr5 70699315 70700072 -81837187 + Lx5 LINE L1 6220 6982 -68 3 1124 207 0 0 0 chr5 70700087 70700110 -81837149 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 1124 900 290 21 47 chr5 70700468 70700848 -81836411 + ORR1D2 LTR MaLR 1 370 0 3 1124 363 405 67 32 chr5 70701219 70701684 -81835575 + L2 LINE L2 2329 2809 -610 3 1124 15232 76 1 2 chr5 70702108 70704855 -81832404 - L1Md_F2 LINE L1 0 6582 3841 3 1124 2109 127 197 0 chr5 70704846 70705232 -81832027 - L1Md_F2 LINE L1 -5675 941 480 3 1124 1584 127 4 4 chr5 70705232 70705478 -81831781 - L1VL1 LINE L1 -6156 266 21 3 1124 27 0 0 0 chr5 70706676 70706703 -81830556 + AT_rich Low_complexity Low_complexity 1 27 0 3 1124 5668 83 3 4 chr5 70707674 70708445 -81828814 - L1_Mus3 LINE L1 -7 6631 5862 3 1124 507 215 127 28 chr5 70708626 70708762 -81828497 + B1_Mur2 SINE Alu 15 147 0 3 1124 576 216 112 0 chr5 70708780 70708914 -81828345 + B1_Mur4 SINE Alu 2 150 0 3 1124 26 30 0 0 chr5 70709043 70709076 -81828183 + AT_rich Low_complexity Low_complexity 1 33 0 3 1124 625 346 16 0 chr5 70709436 70709679 -81827580 - Lx8 LINE L1 -700 6773 6527 3 1124 1841 189 26 55 chr5 70709681 70710062 -81827197 + ORR1C1 LTR MaLR 1 370 -8 3 1124 903 257 58 15 chr5 70710072 70710301 -81826958 + ORR1C1-int LTR MaLR 1 240 -1269 3 1124 1197 153 30 21 chr5 70710301 70710534 -81826725 + RMER4B LTR ERVK 1 235 -350 3 1124 348 279 61 155 chr5 70710553 70710850 -81826409 - RMER2 LTR ERV1 -27 540 272 3 1124 687 263 18 62 chr5 70710816 70711070 -81826189 + ORR1C1 LTR MaLR 139 366 -1 3 1124 1136 107 0 11 chr5 70711078 70711258 -81826001 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 3 1124 6114 67 5 1 chr5 70711575 70712673 -81824586 - L1Md_F2 LINE L1 -401 6181 5079 3 1124 2772 72 28 13 chr5 70712674 70713068 -81824191 + L1Md_F2 LINE L1 6178 6577 -5 3 1124 24 32 0 0 chr5 70713262 70713293 -81823966 + AT_rich Low_complexity Low_complexity 1 31 0 3 1124 180 0 0 0 chr5 70713348 70713368 -81823891 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 3 1124 1321 87 5 11 chr5 70713470 70713655 -81823604 - B2_Mm1a SINE B2 -8 185 2 3 1124 674 314 41 15 chr5 70713769 70714037 -81823222 - Lx7 LINE L1 -799 6897 6623 3 1124 1661 276 17 19 chr5 70714039 70714450 -81822809 - MTD LTR MaLR 0 419 10 3 1124 604 327 14 10 chr5 70714465 70714672 -81822587 - Lx8 LINE L1 -848 6625 6418 3 1124 764 331 70 39 chr5 70714864 70715351 -81821908 - Lx8 LINE L1 -98 7375 6874 3 1124 371 304 115 20 chr5 70715984 70716132 -81821127 + RSINE1 SINE B4 2 163 -2 3 1124 502 292 63 59 chr5 70716407 70716629 -81820630 - B4 SINE B4 -69 223 1 3 1124 1005 323 46 19 chr5 70716720 70717202 -81820057 - Lx8 LINE L1 -13 7460 6966 3 1124 8441 137 31 7 chr5 70717235 70717498 -81819761 + L1_Mm LINE L1 4141 4429 -1454 3 1124 1295 35 17 11 chr5 70717498 70717674 -81819585 + L1Md_F3 LINE L1 6407 6583 -1 3 1124 8441 137 31 7 chr5 70717674 70718456 -81818803 + L1_Mm LINE L1 4430 5222 -661 3 1124 6747 36 1 0 chr5 70718456 70719259 -81818000 - L1Md_F2 LINE L1 -1 6581 5778 3 1124 8441 137 31 7 chr5 70719259 70719283 -81817976 + L1_Mm LINE L1 5223 5250 -633 3 1124 531 0 0 0 chr5 70719283 70719342 -81817917 + (TC)n Simple_repeat Simple_repeat 2 60 0 3 1124 441 0 0 0 chr5 70719342 70719390 -81817869 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1124 387 0 0 0 chr5 70719390 70719432 -81817827 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1124 8441 137 31 7 chr5 70719432 70719802 -81817457 + L1_Mm LINE L1 5251 5617 -266 3 1124 424 229 34 76 chr5 70719802 70719920 -81817339 - RMER20B LTR ERVK -505 122 10 3 1124 705 293 172 14 chr5 70720023 70720314 -81816945 - Lx8 LINE L1 -705 6768 6432 3 1124 22 0 0 0 chr5 70720862 70720884 -81816375 + AT_rich Low_complexity Low_complexity 1 22 0 3 1124 206 233 0 0 chr5 70721082 70721125 -81816134 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 3 1124 24 0 0 0 chr5 70722138 70722162 -81815097 + AT_rich Low_complexity Low_complexity 1 24 0 3 1124 2437 85 6 0 chr5 70722323 70722654 -81814605 - L1_Mus1 LINE L1 0 6567 6235 3 1124 2036 198 21 0 chr5 70722655 70723033 -81814226 - ORR1B1 LTR MaLR -8 386 1 3 1124 251 320 27 0 chr5 70723310 70723457 -81813802 - L1MEc LINE L1 -4552 1848 1698 3 1124 1555 242 146 19 chr5 70723496 70723963 -81813296 - RMER15 LTR ERVL -23 552 27 3 1124 3306 173 44 11 chr5 70723984 70724616 -81812643 - Lx5 LINE L1 -637 6413 5761 3 1124 630 200 31 16 chr5 70724636 70724763 -81812496 + Lx4B LINE L1 6423 6551 -507 3 1124 21 36 0 0 chr5 70724989 70725017 -81812242 + AT_rich Low_complexity Low_complexity 1 28 0 3 1124 221 175 15 31 chr5 70726772 70726837 -81810422 + A-rich Low_complexity Low_complexity 2 65 0 3 1124 365 314 127 0 chr5 70726917 70726969 -81810290 + ID SINE ID 15 81 -143 3 1124 309 311 107 0 chr5 70726969 70727072 -81810187 + PB1D10 SINE Alu 1 114 -3 3 1124 243 298 0 0 chr5 70727561 70727618 -81809641 - MLT1B LTR MaLR -34 356 300 3 1124 433 106 0 12 chr5 70727943 70728029 -81809230 + L1Md_F2 LINE L1 6496 6580 -2 3 1124 299 272 80 63 chr5 70728120 70728359 -81808900 + Lx9 LINE L1 7395 7637 -7 3 1124 434 230 47 13 chr5 70728388 70728538 -81808721 + Lx6 LINE L1 7291 7445 -15 3 1124 27 49 0 0 chr5 70728540 70728581 -81808678 + AT_rich Low_complexity Low_complexity 1 41 0 3 1124 513 291 7 7 chr5 70728748 70728890 -81808369 - B1_Mur1 SINE Alu -2 147 6 3 1124 233 205 128 35 chr5 70728912 70728998 -81808261 - MLT1B LTR MaLR -34 340 247 3 1124 4564 227 83 66 chr5 70729484 70730850 -81806409 + RMER12B LTR ERVK 15 1404 0 3 1124 329 131 0 16 chr5 70730887 70730949 -81806310 + (CATA)n Simple_repeat Simple_repeat 2 62 0 3 1124 285 75 0 0 chr5 70730949 70730989 -81806270 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1124 762 200 98 22 chr5 70731204 70731388 -81805871 - Lx9 LINE L1 -235 7409 7212 3 1124 433 175 7 81 chr5 70731389 70731538 -81805721 + Lx9 LINE L1 7506 7643 -1 3 1124 663 293 82 32 chr5 70731766 70732108 -81805151 + RLTR10D LTR ERVK 1 359 0 3 1124 31820 76 41 3 chr5 70732143 70737372 -81799887 + L1Md_F3 LINE L1 205 5586 -297 3 1124 7690 52 11 0 chr5 70737374 70738347 -81798912 + L1Md_F3 LINE L1 5589 6572 -12 3 1124 965 313 49 11 chr5 70738544 70738912 -81798347 - Lx9 LINE L1 -626 7018 6637 3 1124 306 299 102 68 chr5 70738957 70739280 -81797979 + Lx9 LINE L1 7297 7630 -14 3 1124 4505 57 4 0 chr5 70739547 70740331 -81796928 - L1Md_F2 LINE L1 -488 6094 5306 3 1124 2554 47 3 0 chr5 70740331 70740649 -81796610 + L1Md_F2 LINE L1 6262 6580 -2 3 1124 23 0 0 0 chr5 70741733 70741756 -81795503 + AT_rich Low_complexity Low_complexity 1 23 0 3 1124 30 59 0 0 chr5 70742071 70742122 -81795137 + AT_rich Low_complexity Low_complexity 1 51 0 3 1124 519 328 77 48 chr5 70744151 70744733 -81792526 + L1_Rod LINE L1 5049 5651 -229 3 1124 297 0 0 0 chr5 70744776 70744809 -81792450 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1124 481 290 93 19 chr5 70745438 70745652 -81791607 - Lx9 LINE L1 -209 7435 7206 3 1124 819 161 214 5 chr5 70747922 70748109 -81789150 - URR1A DNA MER1_type 0 226 1 3 1124 193 0 61 30 chr5 70748676 70748709 -81788550 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1124 1014 95 0 0 chr5 70748709 70748846 -81788413 - B1_Mus1 SINE Alu -10 138 2 3 1124 375 127 0 0 chr5 70749600 70749655 -81787604 + B1_Mus2 SINE Alu 1 55 -92 3 1124 1935 46 0 0 chr5 70749664 70749905 -81787354 + L1_Mus2 LINE L1 5711 5951 -615 3 1124 1507 265 74 73 chr5 70750081 70750713 -81786546 + Tigger1 DNA MER2_type 1429 2061 -357 3 1124 451 318 75 13 chr5 70750925 70751151 -81786108 + Tigger1 DNA MER2_type 2063 2302 -116 3 1124 441 0 0 0 chr5 70751152 70751201 -81786058 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1124 955 311 41 3 chr5 70751395 70751689 -81785570 - MTD LTR MaLR 0 419 115 3 1124 942 55 8 0 chr5 70751899 70752026 -81785233 + L1_Mus1 LINE L1 6440 6567 0 3 1124 186 103 0 0 chr5 70753223 70753252 -81784007 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1124 517 12 46 23 chr5 70753552 70753639 -81783620 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 3 1124 189 107 0 0 chr5 70754089 70754117 -81783142 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1124 376 311 76 5 chr5 70754610 70754794 -81782465 - MER46C DNA MER2_type -61 277 81 3 1124 22 0 0 0 chr5 70755043 70755065 -81782194 + AT_rich Low_complexity Low_complexity 1 22 0 3 1124 181 284 77 51 chr5 70755094 70755172 -81782087 - MIRb SINE MIR -63 205 126 3 1124 1189 304 39 13 chr5 70755287 70755674 -81781585 - MTD LTR MaLR -14 405 9 3 1124 231 246 138 52 chr5 70755870 70755986 -81781273 + MIRb SINE MIR 81 206 -62 3 1124 4175 218 53 47 chr5 70756091 70756537 -81780722 + Lx5 LINE L1 6031 6475 -575 3 1124 1684 55 18 0 chr5 70756537 70756755 -81780504 - L1Md_F2 LINE L1 -2 6580 6359 3 1124 4175 218 53 47 chr5 70756755 70757308 -81779951 + Lx5 LINE L1 6476 7036 -14 3 1124 228 67 0 0 chr5 70757308 70757338 -81779921 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 1124 277 373 105 29 chr5 70757392 70757602 -81779657 + MLT2C1 LTR ERVL 63 288 -109 3 1124 378 61 0 0 chr5 70757637 70757686 -81779573 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1124 240 163 0 0 chr5 70757955 70757998 -81779261 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 1124 452 253 0 0 chr5 70758436 70758523 -81778736 + B3 SINE B2 3 89 -127 4 1124 492 298 8 31 chr5 70758568 70758696 -81778563 + B3 SINE B2 91 215 -1 4 1124 22 0 0 0 chr5 70759560 70759582 -81777677 + AT_rich Low_complexity Low_complexity 1 22 0 4 1124 293 281 106 62 chr5 70761419 70761811 -81775448 - MER34B-int LTR ERV1 -1737 3619 3099 4 1124 248 345 53 9 chr5 70762050 70762164 -81775095 - MLT1A0 LTR MaLR -224 141 23 4 1124 227 216 20 0 chr5 70762207 70762258 -81775001 + A-rich Low_complexity Low_complexity 4 55 0 4 1124 597 307 16 6 chr5 70762430 70762728 -81774531 + L1MD LINE L1 5222 5520 -2265 4 1124 332 247 27 0 chr5 70762950 70763023 -81774236 - B3A SINE B2 -123 75 1 4 1124 6010 136 4 39 chr5 70763174 70764732 -81772527 + L1Md_F LINE L1 675 2169 -3714 4 1124 428 279 69 12 chr5 70764733 70764893 -81772366 - Lx6 LINE L1 -658 6802 6634 4 1124 489 260 0 0 chr5 70764940 70765044 -81772215 + Lx5 LINE L1 6263 6366 -684 4 1124 345 277 11 11 chr5 70765252 70765347 -81771912 + B4A SINE B4 125 219 -73 4 1124 406 374 54 29 chr5 70765394 70765636 -81771623 + B4A SINE B4 43 290 -2 4 1124 393 58 0 0 chr5 70765789 70765841 -81771418 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1124 591 53 0 0 chr5 70765930 70766005 -81771254 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1124 269 328 81 10 chr5 70766128 70766325 -81770934 + L1MC3 LINE L1 6430 6640 -1145 4 1124 1286 293 48 8 chr5 70766533 70766884 -81770375 - ORR1D2 LTR MaLR -5 365 1 4 1124 312 284 97 34 chr5 70766951 70767126 -81770133 + L1MC3 LINE L1 6916 7101 -684 4 1124 5113 202 48 29 chr5 70767141 70768297 -81768962 + Lx5 LINE L1 5870 7047 -3 4 1124 413 206 10 0 chr5 70769604 70769701 -81767558 + (TATG)n Simple_repeat Simple_repeat 2 99 0 4 1124 657 294 66 40 chr5 70772154 70772427 -81764832 + Lx8 LINE L1 6197 6476 -997 4 1124 1311 312 89 46 chr5 70772428 70773234 -81764025 + Lx8 LINE L1 6631 7471 -2 4 1124 465 19 0 0 chr5 70773342 70773396 -81763863 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1124 186 241 77 44 chr5 70773745 70773836 -81763423 + L4 LINE RTE 1323 1416 -613 4 1124 496 269 57 43 chr5 70773846 70773986 -81763273 - RSINE1 SINE B4 -8 157 16 4 1124 21 0 0 0 chr5 70774372 70774393 -81762866 + AT_rich Low_complexity Low_complexity 1 21 0 4 1124 1876 294 164 22 chr5 70775207 70775989 -81761270 - Lx6 LINE L1 -173 7287 6168 4 1124 21 36 0 0 chr5 70776206 70776234 -81761025 + AT_rich Low_complexity Low_complexity 1 28 0 4 1124 672 337 7 25 chr5 70776364 70776650 -81760609 - Lx7 LINE L1 -410 7286 7006 4 1124 315 104 0 0 chr5 70776761 70776809 -81760450 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1124 742 340 27 23 chr5 70776814 70777076 -81760183 - B4A SINE B4 -25 267 5 4 1124 557 264 7 59 chr5 70778071 70778224 -81759035 + B1F SINE Alu 4 148 -1 4 1124 1348 294 43 2 chr5 70778294 70778308 -81758951 - Lx8 LINE L1 -457 7016 7002 4 1124 498 17 0 0 chr5 70778308 70778367 -81758892 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1124 1348 294 43 2 chr5 70778367 70778772 -81758487 - Lx8 LINE L1 -472 7001 6581 4 140 322 322 16 33 chr5 70778786 70778908 -81758351 - Lx8 LINE L1 -1152 6321 6202 4 1125 22 0 0 0 chr5 70778918 70778940 -81758319 + AT_rich Low_complexity Low_complexity 1 22 0 4 1125 1196 287 75 50 chr5 70779086 70779526 -81757733 + Lx8 LINE L1 7023 7473 0 4 1125 469 148 7 40 chr5 70780768 70780780 -81756479 + (TA)n Simple_repeat Simple_repeat 1 12 0 4 1125 297 0 0 0 chr5 70780780 70780813 -81756446 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1125 469 148 7 40 chr5 70780813 70780948 -81756311 + (TA)n Simple_repeat Simple_repeat 1 130 0 4 1125 213 65 0 0 chr5 70782309 70782340 -81754919 + (TTG)n Simple_repeat Simple_repeat 2 32 0 4 1125 843 10 0 0 chr5 70782718 70782814 -81754445 + (TTC)n Simple_repeat Simple_repeat 2 97 0 4 1125 269 329 12 0 chr5 70783441 70783523 -81753736 - MER58B DNA MER1_type -24 317 235 4 1125 37907 30 0 0 chr5 70783865 70790306 -81746953 - L1Md_T LINE L1 0 6585 47 4 1125 262 256 88 25 chr5 70791039 70791119 -81746140 + RSINE1 SINE B4 79 163 -2 4 1125 1733 299 53 40 chr5 70791193 70791796 -81745463 - Lx5 LINE L1 -3 7047 6437 4 1125 3831 96 26 0 chr5 70792484 70793024 -81744235 - Lx3_Mus LINE L1 0 7009 6456 4 1125 261 0 0 0 chr5 70795262 70795291 -81741968 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 1125 19533 107 10 19 chr5 70796213 70800045 -81737214 - L1_Mus1 LINE L1 0 6567 2767 4 1125 6370 68 10 3 chr5 70800042 70801486 -81735773 - L1_Mus1 LINE L1 -4042 1841 387 4 1125 10468 170 36 12 chr5 70801487 70803608 -81733651 - L1_Mur1 LINE L1 -1230 4656 2484 4 1125 1434 127 4 8 chr5 70803605 70803843 -81733416 - Lx3_Mus LINE L1 -770 5884 5648 4 1125 3038 143 50 2 chr5 70803843 70804361 -81732898 + Lx2 LINE L1 6454 6996 -1 4 1125 571 286 8 40 chr5 70804361 70804388 -81732871 - L1MA5A LINE L1 -618 5679 5656 4 1125 25 90 0 0 chr5 70806725 70806792 -81730467 + AT_rich Low_complexity Low_complexity 1 67 0 4 1125 228 296 60 20 chr5 70807182 70807282 -81729977 + MLT1A1 LTR MaLR 259 362 -46 4 1125 3296 90 34 14 chr5 70807380 70807874 -81729385 + Lx3_Mus LINE L1 6506 7009 0 4 1125 2275 218 221 21 chr5 70807902 70808616 -81728643 - L1_Mur2 LINE L1 -401 5476 4620 4 1125 21 36 0 0 chr5 70808708 70808736 -81728523 + AT_rich Low_complexity Low_complexity 1 28 0 4 1125 2169 182 36 59 chr5 70808766 70809244 -81728015 + RLTR20B3 LTR ERVK 111 577 0 4 1125 9882 168 55 49 chr5 70810505 70811387 -81725872 - L1_Mur2 LINE L1 -287 5590 4670 4 1125 575 75 25 0 chr5 70811387 70811467 -81725792 - MTB LTR MaLR 0 400 319 4 1125 9882 168 55 49 chr5 70811467 70812612 -81724647 - L1_Mur2 LINE L1 -287 4669 3471 4 1125 183 42 0 0 chr5 70812612 70812636 -81724623 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1125 9882 168 55 49 chr5 70812636 70812731 -81724528 - L1_Mur2 LINE L1 -2407 3470 3375 4 1125 4572 199 100 22 chr5 70812725 70813431 -81723828 + Lx4B LINE L1 5596 6332 -726 4 1125 2515 94 43 34 chr5 70813431 70813848 -81723411 + BGLII LTR ERVK 1 421 0 4 1125 4572 225 83 20 chr5 70813848 70814376 -81722883 + Lx4B LINE L1 6209 7013 -45 4 1125 180 97 0 0 chr5 70814385 70814416 -81722843 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 4 1125 492 363 63 4 chr5 70814471 70814723 -81722536 - MLT1F-int LTR MaLR -7 1482 1216 4 1125 37901 30 0 0 chr5 70814798 70821450 -81715809 - L1Md_T LINE L1 0 6585 1 4 1125 185 149 0 41 chr5 70821468 70821517 -81715742 + T-rich Low_complexity Low_complexity 3 49 0 4 1125 537 196 5 12 chr5 70821585 70821711 -81715548 - MTB_Mm LTR MaLR 0 421 257 4 1125 18967 22 0 1 chr5 70821711 70823937 -81713322 + L1Md_A LINE L1 3363 5586 -297 4 1125 8451 34 0 0 chr5 70823937 70824933 -81712326 + L1Md_A LINE L1 5587 6582 0 4 1125 979 238 121 45 chr5 70824941 70825231 -81712028 - MTB_Mm LTR MaLR -94 313 2 4 1125 1491 263 186 8 chr5 70825439 70825588 -81711671 - L1Md_T LINE L1 -671 5911 5726 4 1125 1452 210 35 30 chr5 70825588 70825961 -81711298 - ORR1C1 LTR MaLR 0 378 4 4 1125 1491 243 228 8 chr5 70825961 70826463 -81710796 - L1Md_T LINE L1 -122 5725 5089 4 1125 284 148 16 0 chr5 70826688 70826749 -81710510 + (TATG)n Simple_repeat Simple_repeat 3 64 0 4 1125 448 349 39 7 chr5 70826749 70826811 -81710448 - RSINE1 SINE B4 -7 158 93 4 1125 207 0 0 0 chr5 70826811 70826834 -81710425 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1125 448 349 39 7 chr5 70826834 70826924 -81710335 - RSINE1 SINE B4 -73 92 2 4 1125 200 227 0 0 chr5 70827034 70827078 -81710181 + T-rich Low_complexity Low_complexity 1 44 0 4 1125 7890 60 3 5 chr5 70827290 70828466 -81708793 - L1Md_F2 LINE L1 0 6582 5408 4 1125 1413 103 9 43 chr5 70828467 70828700 -81708559 - MTB_Mm LTR MaLR -181 226 2 4 1125 394 239 0 0 chr5 70828700 70828785 -81708474 + RLTR11A2 LTR ERVK 443 527 0 4 1125 281 346 0 29 chr5 70829391 70829495 -81707764 + B3A SINE B2 2 102 -96 4 1125 1112 232 28 26 chr5 70829495 70829818 -81707441 + RLTR26 LTR ERVK 1 349 -293 4 1125 1269 64 0 0 chr5 70829818 70829975 -81707284 - L1_Mus3 LINE L1 -165 6473 6317 4 1125 922 105 13 7 chr5 70829975 70830129 -81707130 + L1_Mus3 LINE L1 6483 6637 -1 4 1125 1081 224 6 167 chr5 70830130 70830495 -81706764 + RLTR26 LTR ERVK 337 642 0 4 1125 522 0 0 0 chr5 70832757 70832815 -81704444 + (TC)n Simple_repeat Simple_repeat 2 59 0 4 1125 293 280 27 0 chr5 70833034 70833109 -81704150 - B3A SINE B2 -118 80 4 4 1125 264 246 27 55 chr5 70833122 70833195 -81704064 - ID_B1 SINE B4 -9 215 145 4 1125 353 287 81 0 chr5 70833211 70833298 -81703961 - B1_Mur1 SINE Alu -29 120 27 4 1125 391 333 43 21 chr5 70834000 70834141 -81703118 + B4A SINE B4 1 144 -148 4 1125 876 37 0 0 chr5 70834276 70834384 -81702875 + (GGAA)n Simple_repeat Simple_repeat 2 109 0 4 1125 24 0 0 0 chr5 70835419 70835443 -81701816 + AT_rich Low_complexity Low_complexity 1 24 0 4 1125 724 205 0 0 chr5 70835571 70835698 -81701561 + B1_Mus2 SINE Alu 13 139 -8 4 1125 462 18 0 0 chr5 70835699 70835754 -81701505 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1125 1443 28 0 0 chr5 70835754 70835929 -81701330 + (GGAAA)n Simple_repeat Simple_repeat 3 178 0 4 1125 21 36 0 0 chr5 70836799 70836827 -81700432 + AT_rich Low_complexity Low_complexity 1 28 0 4 1125 1367 230 46 40 chr5 70837225 70837597 -81699662 + ORR1D1 LTR MaLR 1 374 0 4 1125 192 40 0 0 chr5 70837784 70837809 -81699450 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1125 459 359 50 63 chr5 70837850 70838231 -81699028 + MTEa LTR MaLR 2 377 -2 4 1125 1110 357 81 112 chr5 70838256 70838502 -81698757 + MTEa-int LTR MaLR 19 230 -1350 4 1125 2261 165 8 5 chr5 70838502 70838886 -81698373 - Lx4A LINE L1 -1 7057 6673 4 1125 1110 357 81 112 chr5 70838886 70839156 -81698103 + MTEa-int LTR MaLR 231 453 -1127 4 1125 186 43 0 0 chr5 70839156 70839179 -81698080 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1125 1110 357 81 112 chr5 70839179 70839818 -81697441 + MTEa-int LTR MaLR 454 1139 -441 4 1125 253 363 10 10 chr5 70839951 70840054 -81697205 + HERV16-int LTR ERVL 1215 1317 -3679 4 1125 180 77 0 0 chr5 70840610 70840636 -81696623 + (TTTTTA)n Simple_repeat Simple_repeat 6 31 0 4 1125 283 78 0 38 chr5 70841074 70841127 -81696132 + (TTTC)n Simple_repeat Simple_repeat 3 53 0 4 1125 399 232 0 0 chr5 70841127 70841209 -81696050 - B1_Mur3 SINE Alu 0 149 68 4 1125 2605 303 48 21 chr5 70841241 70841447 -81695812 + Lx7 LINE L1 6257 6475 -1221 4 1125 3335 38 2 0 chr5 70841447 70841842 -81695417 + MTA_Mm LTR MaLR 1 396 0 4 1125 2605 303 48 21 chr5 70841842 70842501 -81694758 + Lx7 LINE L1 6476 7146 -550 4 1125 31939 91 8 8 chr5 70842505 70847331 -81689928 + L1Md_F2 LINE L1 422 5233 -650 4 1125 423 56 0 0 chr5 70847331 70847385 -81689874 + (TA)n Simple_repeat Simple_repeat 1 54 0 5 1125 31939 73 6 4 chr5 70847385 70847723 -81689536 + L1Md_F2 LINE L1 5234 5584 -299 4 1125 7423 74 2 3 chr5 70847724 70848704 -81688555 + L1Md_F2 LINE L1 5588 6566 -16 4 1125 240 322 8 50 chr5 70848765 70848886 -81688373 + Lx7 LINE L1 7188 7303 -393 5 1125 383 256 35 0 chr5 70849082 70849168 -81688091 + MTD LTR MaLR 198 286 -133 5 1125 636 14 0 0 chr5 70849396 70849469 -81687790 + (TC)n Simple_repeat Simple_repeat 1 73 0 5 1125 378 308 108 0 chr5 70849732 70849852 -81687407 + RSINE1 SINE B4 9 141 -24 5 1125 378 0 0 0 chr5 70850152 70850194 -81687065 + (GA)n Simple_repeat Simple_repeat 1 42 0 5 1125 198 283 57 57 chr5 70850419 70850524 -81686735 - MIR SINE MIR -87 121 17 5 1125 8072 46 6 1 chr5 70850845 70851922 -81685337 - L1Md_F2 LINE L1 -8 6574 5493 5 1125 484 324 55 39 chr5 70853534 70853788 -81683471 + MLT1F1 LTR MaLR 299 556 -13 5 1125 764 90 0 16 chr5 70854158 70854282 -81682977 + (GGAA)n Simple_repeat Simple_repeat 1 122 0 5 1125 449 319 50 141 chr5 70854453 70854935 -81682324 + RMER13A LTR ERVK 22 507 -120 5 1125 2489 160 207 4 chr5 70857035 70857543 -81679716 + RMER19C LTR ERVK 1 611 0 5 1125 21 0 0 0 chr5 70857559 70857580 -81679679 + AT_rich Low_complexity Low_complexity 1 21 0 5 1125 288 77 0 0 chr5 70859250 70859289 -81677970 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 5 1125 4757 35 0 2 chr5 70859339 70859907 -81677352 - L1Md_T LINE L1 -1 6581 6015 5 1125 3491 31 0 0 chr5 70859907 70860394 -81676865 + L1Md_T LINE L1 5521 6007 -575 5 1125 33 66 0 0 chr5 70860723 70860784 -81676475 + AT_rich Low_complexity Low_complexity 1 61 0 5 1125 377 357 95 21 chr5 70861594 70862015 -81675244 - MLT1C LTR MaLR -9 458 7 5 1125 260 300 42 62 chr5 70862871 70863039 -81674220 + MIRc SINE MIR 23 187 -89 5 1125 495 33 0 0 chr5 70863695 70863756 -81673503 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1125 318 275 38 0 chr5 70864877 70864957 -81672302 + B1F2 SINE Alu 3 85 -64 5 1125 296 330 0 0 chr5 70864957 70864970 -81672289 + ID_B1 SINE B4 84 176 -48 5 1125 260 344 61 45 chr5 70866246 70866444 -81670815 + HERV16-int LTR ERVL 2851 3051 -1945 5 1125 2587 90 6 3 chr5 70866461 70866805 -81670454 + L1_Mus4 LINE L1 6117 6461 -175 5 1125 341 92 0 0 chr5 70866805 70866870 -81670389 + L1_Mus4 LINE L1 6574 6638 0 5 1125 409 71 0 0 chr5 70867204 70867274 -81669985 + L1Md_F2 LINE L1 6513 6582 0 5 1125 285 256 90 34 chr5 70869031 70869120 -81668139 - B3A SINE B2 -103 95 2 5 1125 1922 349 104 21 chr5 70869339 70870363 -81666896 - MTE2b-int LTR MaLR -384 1196 88 5 1125 494 316 15 0 chr5 70870389 70870522 -81666737 - B1_Mur3 SINE Alu -6 143 9 5 1125 265 280 46 92 chr5 70870475 70870605 -81666654 - MTE2b-int LTR MaLR -1456 124 1 5 1125 444 37 0 0 chr5 70870613 70870667 -81666592 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1125 369 303 25 0 chr5 70870667 70870803 -81666456 - MTE2b LTR MaLR -20 359 213 5 1125 452 405 0 33 chr5 70871063 70871275 -81665984 - MTE2b LTR MaLR -128 251 47 5 1125 239 0 0 31 chr5 70871305 70871337 -81665922 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1125 831 372 40 44 chr5 70872028 70872531 -81664728 + MLT1D LTR MaLR 3 503 -2 5 1125 210 71 0 0 chr5 70873832 70873860 -81663399 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 5 1125 28 0 0 0 chr5 70873943 70873971 -81663288 + AT_rich Low_complexity Low_complexity 1 28 0 5 1125 893 208 6 0 chr5 70874357 70874535 -81662724 + L1VL4 LINE L1 563 741 -5561 5 1125 5607 113 31 48 chr5 70874531 70875493 -81661766 + L1_Mus4 LINE L1 5684 6629 -7 5 1125 222 171 0 0 chr5 70875562 70875603 -81661656 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1125 11773 177 26 121 chr5 70875608 70877575 -81659684 + Lx2B LINE L1 3001 4640 -1246 5 1125 489 34 0 0 chr5 70877575 70877634 -81659625 + (CAA)n Simple_repeat Simple_repeat 2 60 0 5 1125 11773 183 21 84 chr5 70877634 70880013 -81657246 + Lx2B LINE L1 4641 7000 0 5 1125 1243 183 0 4 chr5 70880121 70880357 -81656902 + Lx LINE L1 6412 6646 -8 5 1125 29 28 0 0 chr5 70880361 70880397 -81656862 + AT_rich Low_complexity Low_complexity 1 36 0 5 1125 230 237 0 13 chr5 70880459 70880536 -81656723 + CT-rich Low_complexity Low_complexity 2 77 0 5 1125 254 363 22 7 chr5 70880536 70880595 -81656664 - ID_B1 SINE B4 0 224 87 5 1125 258 273 13 0 chr5 70880595 70880672 -81656587 - PB1D10 SINE Alu -34 83 6 5 1125 740 346 122 8 chr5 70881219 70881734 -81655525 + Lx7 LINE L1 6721 7294 -402 5 1125 23 0 0 0 chr5 70881839 70881862 -81655397 + AT_rich Low_complexity Low_complexity 1 23 0 5 1125 757 239 97 88 chr5 70881951 70882290 -81654969 + Lx7 LINE L1 5755 6096 -1600 5 1125 708 171 0 0 chr5 70882280 70882409 -81654850 + Lx2 LINE L1 6869 6997 0 5 1125 5579 237 65 31 chr5 70882416 70882499 -81654760 + Lx7 LINE L1 6093 6176 -1520 5 1125 482 67 13 0 chr5 70882499 70882574 -81654685 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1125 5579 237 65 31 chr5 70882574 70884005 -81653254 + Lx7 LINE L1 6177 7658 -38 5 1125 825 183 25 51 chr5 70884394 70884590 -81652669 - URR1B DNA MER1_type 0 225 35 5 1125 21 0 0 0 chr5 70884980 70885001 -81652258 + AT_rich Low_complexity Low_complexity 1 21 0 5 1125 3088 219 40 26 chr5 70885336 70886062 -81651197 + Lx5 LINE L1 5834 6569 -481 5 1125 3184 80 15 20 chr5 70886058 70886517 -81650742 - L1Md_F2 LINE L1 -347 5536 5080 5 1125 7236 80 11 1 chr5 70886517 70887482 -81649777 + L1Md_F2 LINE L1 5600 6574 -8 5 1125 757 217 6 18 chr5 70887482 70887651 -81649608 + Lx4B LINE L1 6585 6751 -307 5 1125 374 283 141 76 chr5 70887667 70888049 -81649210 + L1M5 LINE L1 3682 4088 -2058 5 1125 264 59 0 0 chr5 70888536 70888570 -81648689 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1125 22 56 0 0 chr5 70888619 70888655 -81648604 + AT_rich Low_complexity Low_complexity 1 36 0 5 1125 789 211 151 0 chr5 70888728 70888913 -81648346 + B3 SINE B2 1 213 -3 5 1125 1471 231 48 0 chr5 70888995 70889307 -81647952 - MTC LTR MaLR -90 331 5 5 1125 8084 41 0 0 chr5 70889987 70891019 -81646240 - L1Md_T LINE L1 0 6582 5551 5 1125 877 103 95 0 chr5 70891257 70891383 -81645876 - B1_Mus2 SINE Alu -9 138 1 5 1125 308 165 523 0 chr5 70891532 70891641 -81645618 + Lx2 LINE L1 6785 6950 -47 5 1125 253 343 84 28 chr5 70891845 70892058 -81645201 - LTR83 LTR ERVL -370 410 186 5 1125 253 368 42 24 chr5 70892591 70892758 -81644501 - L4 LINE RTE -648 1381 1212 5 1125 22 0 0 0 chr5 70893214 70893236 -81644023 + AT_rich Low_complexity Low_complexity 1 22 0 5 1125 285 98 0 0 chr5 70893718 70893759 -81643500 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 5 1125 1029 31 0 0 chr5 70893759 70893888 -81643371 + (TG)n Simple_repeat Simple_repeat 1 129 0 5 1125 501 17 0 0 chr5 70893888 70893945 -81643314 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1125 236 318 68 0 chr5 70894118 70894206 -81643053 - B3A SINE B2 -72 126 33 5 1125 219 36 0 0 chr5 70894225 70894253 -81643006 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1125 487 305 92 0 chr5 70894349 70894480 -81642779 + RSINE1 SINE B4 3 145 -20 5 1125 395 207 66 75 chr5 70894495 70894660 -81642599 + Lx7 LINE L1 5095 5274 -866 5 1125 407 356 85 43 chr5 70894839 70895553 -81641706 + Lx7 LINE L1 5589 6334 -1139 5 1125 299 297 35 15 chr5 70897177 70897378 -81639881 + L1M2 LINE L1 5670 5875 -425 5 1125 539 350 98 50 chr5 70897662 70898119 -81639140 - MER34A1 LTR ERV1 -90 497 19 5 1125 3881 149 17 5 chr5 70899096 70899512 -81637747 - Lx2 LINE L1 -208 6789 6373 5 1125 4833 68 5 5 chr5 70899512 70900150 -81637109 - L1Md_F2 LINE L1 -1 6581 5944 5 1125 3881 149 17 5 chr5 70900150 70900366 -81636893 - Lx2 LINE L1 -625 6372 6150 5 1125 995 155 62 0 chr5 70900385 70900578 -81636681 + Lx2 LINE L1 6791 6995 -2 5 1125 441 54 0 0 chr5 70901120 70901176 -81636083 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1125 860 114 7 0 chr5 70903255 70903395 -81633864 + (TCTA)n Simple_repeat Simple_repeat 2 142 0 5 1125 9131 146 18 2 chr5 70904118 70906007 -81631252 + Lx LINE L1 4189 6112 -542 5 1125 1480 137 12 12 chr5 70906007 70906265 -81630994 + Lx LINE L1 6389 6646 -8 5 1125 318 182 27 0 chr5 70906452 70906562 -81630697 + (TA)n Simple_repeat Simple_repeat 1 113 0 5 140 32552 86 13 15 chr5 70906914 70912884 -81624375 - L1Md_F2 LINE L1 0 6582 633 5 1126 21 57 0 0 chr5 70913963 70913998 -81623261 + AT_rich Low_complexity Low_complexity 1 35 0 5 1126 24 0 0 0 chr5 70914800 70914824 -81622435 + AT_rich Low_complexity Low_complexity 1 24 0 5 1126 629 47 0 12 chr5 70915253 70915339 -81621920 + (TC)n Simple_repeat Simple_repeat 2 86 0 5 1126 186 236 0 0 chr5 70915381 70915436 -81621823 + CT-rich Low_complexity Low_complexity 4 58 0 5 1126 258 341 101 7 chr5 70915569 70915708 -81621551 + Ricksha_c DNA MuDR 706 857 -1191 5 1126 824 102 16 0 chr5 70916462 70916590 -81620669 + (TTCC)n Simple_repeat Simple_repeat 3 132 0 5 1126 365 347 25 8 chr5 70916590 70916709 -81620550 - B1F SINE Alu -14 135 15 5 1126 428 351 58 51 chr5 70919214 70919508 -81617751 + MTD LTR MaLR 110 405 -14 5 1126 3476 188 81 57 chr5 70919571 70920583 -81616676 + Lx7 LINE L1 2057 3092 -2788 5 1126 2043 70 0 0 chr5 70920578 70920836 -81616423 + L1Md_F3 LINE L1 5328 5585 -298 5 1126 8214 41 4 3 chr5 70920837 70921834 -81615425 + L1Md_F3 LINE L1 5587 6584 0 5 1126 21 0 0 0 chr5 70922003 70922024 -81615235 + AT_rich Low_complexity Low_complexity 1 21 0 5 1126 21 0 0 0 chr5 70922058 70922079 -81615180 + AT_rich Low_complexity Low_complexity 1 21 0 5 1126 5909 244 27 26 chr5 70922086 70924238 -81613021 + Lx7 LINE L1 5087 7268 -428 5 1126 595 94 41 10 chr5 70924243 70924340 -81612919 + RLTR13B1 LTR ERVK 1 100 -793 5 1126 4117 169 27 24 chr5 70924344 70925195 -81612064 + RLTR13A LTR ERVK 2 855 0 5 1126 281 262 71 0 chr5 70925198 70925282 -81611977 + Lx7 LINE L1 7273 7362 -334 5 1126 25 65 0 0 chr5 70925282 70925328 -81611931 + AT_rich Low_complexity Low_complexity 1 46 0 5 1126 679 259 167 17 chr5 70925346 70925633 -81611626 + Lx7 LINE L1 7367 7696 0 5 1126 323 91 0 61 chr5 70925638 70925720 -81611539 + A-rich Low_complexity Low_complexity 2 78 0 5 1126 1413 200 18 152 chr5 70925720 70926233 -81611026 - BGLII_A LTR ERVK 0 445 2 5 1126 491 292 73 33 chr5 70926249 70926550 -81610709 + MER34 LTR ERV1 92 404 -138 5 1126 1392 79 0 0 chr5 70926602 70926791 -81610468 + L1_Mus2 LINE L1 6378 6566 0 5 1126 2008 180 36 6 chr5 70926943 70927306 -81609953 + ORR1B1 LTR MaLR 1 374 -20 5 1126 23 33 0 0 chr5 70927359 70927389 -81609870 + AT_rich Low_complexity Low_complexity 1 30 0 6 1126 280 275 0 36 chr5 70928024 70928107 -81609152 - ID4_ SINE ID 0 83 4 6 1126 24 53 0 0 chr5 70929714 70929752 -81607507 + AT_rich Low_complexity Low_complexity 1 38 0 6 1126 202 229 0 0 chr5 70929833 70929881 -81607378 + (TA)n Simple_repeat Simple_repeat 1 48 0 6 1126 699 234 18 47 chr5 70929930 70929977 -81607282 - Lx6 LINE L1 -236 7224 7184 6 1126 3033 164 121 48 chr5 70929977 70930682 -81606577 - RMER6A LTR ERVK 0 756 1 6 1126 699 234 18 47 chr5 70930682 70930804 -81606455 - Lx6 LINE L1 -277 7183 7060 6 1126 1499 282 36 8 chr5 70930818 70931286 -81605973 - Lx9 LINE L1 -713 6931 6451 6 1126 10050 95 6 10 chr5 70931345 70933533 -81603726 - L1_Mus2 LINE L1 0 6566 4389 6 1126 4383 16 2 0 chr5 70933533 70934025 -81603234 - MT2_Mm LTR ERVL 0 493 1 6 1126 314 0 0 0 chr5 70934025 70934063 -81603196 - MERVL-int LTR ERVL 0 5485 5448 6 1126 392 167 46 35 chr5 70934063 70934150 -81603109 - ORR1A3-int LTR MaLR -1323 640 553 6 1126 47297 16 6 0 chr5 70934150 70939476 -81597783 - MERVL-int LTR ERVL -125 5360 1 6 1126 4398 14 2 0 chr5 70939476 70939968 -81597291 - MT2_Mm LTR ERVL 0 493 1 6 1126 605 116 0 0 chr5 70939968 70940063 -81597196 - L1_Mus2 LINE L1 -1490 4393 4299 6 1126 24 0 0 0 chr5 70940105 70940129 -81597130 + AT_rich Low_complexity Low_complexity 1 24 0 6 1126 26 30 0 0 chr5 70940234 70940267 -81596992 + AT_rich Low_complexity Low_complexity 1 33 0 6 1126 282 87 0 0 chr5 70940396 70940442 -81596817 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 6 1126 212 281 61 20 chr5 70940917 70941015 -81596244 + L2 LINE L2 2341 2442 -977 6 1126 558 108 0 0 chr5 70941031 70941114 -81596145 + (TC)n Simple_repeat Simple_repeat 2 84 0 6 1126 27 0 0 0 chr5 70941427 70941454 -81595805 + AT_rich Low_complexity Low_complexity 1 27 0 6 1126 359 343 5 64 chr5 70941688 70941875 -81595384 - ORR1D2 LTR MaLR 0 370 195 6 1126 27 103 0 0 chr5 70941875 70941972 -81595287 + AT_rich Low_complexity Low_complexity 1 97 0 6 1126 595 175 0 0 chr5 70942083 70942186 -81595073 - U6 snRNA snRNA -4 103 1 6 1126 681 291 50 5 chr5 70942186 70942386 -81594873 - ORR1D2 LTR MaLR -161 209 1 6 1126 246 62 0 0 chr5 70942414 70942446 -81594813 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 6 1126 1035 94 0 0 chr5 70942449 70942587 -81594672 - B1_Mus1 SINE Alu -8 140 3 6 1126 186 43 0 0 chr5 70942753 70942776 -81594483 + (CATTT)n Simple_repeat Simple_repeat 5 27 0 6 1126 2400 135 19 24 chr5 70943040 70943451 -81593808 + RLTR9E LTR ERVK 1 409 0 6 1126 352 122 12 12 chr5 70943809 70943892 -81593367 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 1126 1014 261 104 30 chr5 70944096 70944498 -81592761 - MTD LTR MaLR -14 405 11 6 1126 255 31 0 0 chr5 70944522 70944554 -81592705 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1126 1137 88 0 0 chr5 70944562 70944709 -81592550 - B1_Mm SINE Alu 0 147 1 6 1126 210 154 0 0 chr5 70944714 70944753 -81592506 + T-rich Low_complexity Low_complexity 1 39 0 6 1126 225 0 0 0 chr5 70945858 70945883 -81591376 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 6 1126 1011 214 109 51 chr5 70945892 70946203 -81591056 - IAPEY3_LTR LTR ERVK 0 332 4 6 1126 1315 191 60 15 chr5 70946205 70946539 -81590720 - IAP-d-int LTR ERVK -8 6473 6125 6 1126 1648 138 47 25 chr5 70946556 70946895 -81590364 - IAPEY3-int LTR ERVK -342 7338 6965 6 1126 1379 129 107 0 chr5 70946895 70947120 -81590139 - IAP-d-int LTR ERVK -1287 5255 5007 6 1126 373 140 0 0 chr5 70947120 70947177 -81590082 - IAP-d-int LTR ERVK -6039 503 447 6 1126 280 192 58 0 chr5 70947369 70947421 -81589838 - RMER16-int LTR ERVK -983 1004 950 6 1126 284 241 50 12 chr5 70947416 70947496 -81589763 - RMER16-int LTR ERVK -4591 815 733 6 1126 789 195 22 37 chr5 70947619 70947893 -81589366 - MMERVK10C-int LTR ERVK -6715 866 713 6 1126 2876 122 2 7 chr5 70948000 70948422 -81588837 - MMERVK10C-int LTR ERVK -7159 422 3 6 1126 402 21 0 0 chr5 70948493 70948540 -81588719 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1126 372 59 0 0 chr5 70948540 70948590 -81588669 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1126 424 328 8 17 chr5 70948607 70948725 -81588534 - B3A SINE B2 -55 143 27 6 1126 181 53 25 50 chr5 70948727 70948767 -81588492 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1126 1388 130 105 0 chr5 70948767 70949014 -81588245 - RMER1B Other Other -9 1057 785 6 1126 4369 20 0 0 chr5 70949272 70949765 -81587494 + MT2_Mm LTR ERVL 1 493 0 6 1126 5195 12 0 0 chr5 70949765 70950348 -81586911 + MERVL-int LTR ERVL 1 583 -4902 6 1126 1943 126 252 35 chr5 70950348 70950808 -81586451 - RLTR6_Mm LTR ERV1 -58 596 37 6 1126 246 218 200 38 chr5 70950810 70950915 -81586344 - RLTR6_Mm LTR ERV1 -532 122 1 6 1126 13883 16 10 24 chr5 70950915 70952561 -81584698 + MERVL-int LTR ERVL 595 2217 -3268 6 1126 3588 48 5 2 chr5 70952561 70952996 -81584263 + RLTR10C LTR ERVK 1 436 0 6 1126 2759 58 0 0 chr5 70952996 70953339 -81583920 + MMERVK10C-int LTR ERVK 1 343 -7238 6 1126 915 143 4 177 chr5 70953337 70953608 -81583651 + MMERVK10C-int LTR ERVK 729 952 -6629 6 1126 656 240 124 55 chr5 70953698 70954069 -81583190 + MMERVK10C-int LTR ERVK 318 668 -5469 6 1126 315 146 18 0 chr5 70954072 70954127 -81583132 + MMERVK10C-int LTR ERVK 1724 1779 -5627 6 1126 381 95 0 0 chr5 70954134 70954197 -81583062 + MMERVK10C-int LTR ERVK 1885 1947 -5634 6 1126 43842 22 0 10 chr5 70954203 70959286 -81577973 + MMERVK10C-int LTR ERVK 2552 7581 0 6 1126 3459 47 21 2 chr5 70959286 70959714 -81577545 + RLTR10C LTR ERVK 1 436 0 6 1126 10917 16 1 0 chr5 70959714 70960935 -81576324 + MERVL-int LTR ERVL 2212 3433 -2052 6 1126 3412 19 2 0 chr5 70960935 70961347 -81575912 + MTA_Mm-int LTR MaLR 686 1098 0 6 1126 3592 10 0 0 chr5 70961347 70961743 -81575516 + MTA_Mm LTR MaLR 1 396 0 6 1126 1768 216 63 18 chr5 70962129 70962524 -81574735 - MTC LTR MaLR -8 413 1 6 1126 751 369 68 65 chr5 70962549 70963091 -81574168 + Tigger7 DNA MER2_type 1 544 -6 6 1126 28 0 0 0 chr5 70963596 70963624 -81573635 + AT_rich Low_complexity Low_complexity 1 28 0 6 1126 808 87 158 0 chr5 70963745 70963872 -81573387 + B1_Mus1 SINE Alu 2 148 0 6 1126 202 271 14 28 chr5 70964558 70964630 -81572629 + CT-rich Low_complexity Low_complexity 2 72 0 6 1126 214 372 70 40 chr5 70964805 70965004 -81572255 + B4A SINE B4 10 214 -78 6 1126 1150 310 39 29 chr5 70965067 70965482 -81571777 - Lx8 LINE L1 -205 7268 6850 6 1126 376 35 17 17 chr5 70966571 70966630 -81570629 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 1126 1053 42 7 7 chr5 70966684 70966829 -81570430 - L1Md_F3 LINE L1 -1 6583 6439 6 1126 7397 74 10 4 chr5 70968157 70969697 -81567562 - L1Md_F2 LINE L1 -12 6570 5024 6 1126 20586 94 15 40 chr5 70969687 70973792 -81563467 - L1Md_F2 LINE L1 -1718 4165 163 6 1126 21 57 0 0 chr5 70974139 70974174 -81563085 + AT_rich Low_complexity Low_complexity 1 35 0 6 1126 237 271 0 0 chr5 70974685 70974755 -81562504 - L1MA5A LINE L1 -170 6127 6058 6 1126 1424 206 67 40 chr5 70975076 70975451 -81561808 - RMER6C LTR ERVK -11 679 295 6 1126 27 49 0 0 chr5 70975461 70975502 -81561757 + AT_rich Low_complexity Low_complexity 1 41 0 6 1126 330 91 0 0 chr5 70975533 70975588 -81561671 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 6 1126 1401 223 10 20 chr5 70975594 70975887 -81561372 - RMER6C LTR ERVK -400 290 1 6 1126 418 308 17 8 chr5 70975919 70976037 -81561222 - B3A SINE B2 -65 133 15 6 1126 22 0 0 0 chr5 70976045 70976067 -81561192 + AT_rich Low_complexity Low_complexity 1 22 0 6 1126 24 96 0 0 chr5 70976568 70976641 -81560618 + AT_rich Low_complexity Low_complexity 1 73 0 6 1126 1216 84 6 6 chr5 70977515 70977695 -81559564 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1126 960 95 0 0 chr5 70977695 70977832 -81559427 + (GGAA)n Simple_repeat Simple_repeat 1 137 0 6 1126 427 333 6 13 chr5 70977943 70978101 -81559158 - Lx6 LINE L1 -30 7430 7274 6 1126 1319 201 0 0 chr5 70978097 70978341 -81558918 - L1_Mur3 LINE L1 -358 5522 5279 6 1126 1916 189 42 33 chr5 70978339 70978765 -81558494 - Lx2B LINE L1 -5 6995 6566 6 1126 1184 164 0 9 chr5 70978766 70978987 -81558272 + Lx2B LINE L1 6777 6995 -5 6 1126 2296 156 46 10 chr5 70978987 70979723 -81557536 - L1VL4 LINE L1 -2215 1344 585 6 1126 7968 48 5 8 chr5 70979721 70980631 -81556628 - L1Md_F2 LINE L1 0 6582 5678 6 1126 522 0 0 0 chr5 70980631 70980689 -81556570 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 6 1126 7968 60 5 12 chr5 70980689 70981455 -81555804 - L1Md_F2 LINE L1 -206 5677 4913 6 1126 658 255 109 62 chr5 70981443 70981857 -81555402 - L1VL2 LINE L1 -5681 654 118 6 1126 1388 225 30 11 chr5 70981895 70982264 -81554995 - L1_Mur2 LINE L1 -576 5301 4926 6 1126 1912 218 73 26 chr5 70982769 70983274 -81553985 + RLTR24 LTR ERV1 1 529 0 6 1126 22 56 0 0 chr5 70984593 70984629 -81552630 + AT_rich Low_complexity Low_complexity 1 36 0 6 1126 22 35 0 0 chr5 70986290 70986319 -81550940 + AT_rich Low_complexity Low_complexity 1 29 0 6 1126 27 0 0 0 chr5 70988309 70988336 -81548923 + AT_rich Low_complexity Low_complexity 1 27 0 6 1126 832 275 10 0 chr5 70988567 70988774 -81548485 + B3 SINE B2 2 210 -6 6 1126 7516 88 14 0 chr5 70989467 70990851 -81546408 - L1_Mus2 LINE L1 -2 6564 5153 6 1126 414 233 46 11 chr5 70991037 70991211 -81546048 + (TA)n Simple_repeat Simple_repeat 1 180 0 6 1126 554 179 35 6 chr5 70991242 70991416 -81545843 + (TA)n Simple_repeat Simple_repeat 1 179 0 6 1126 1206 324 51 18 chr5 70991600 70992106 -81545153 - Lx8 LINE L1 -398 7075 6553 6 1126 29 0 0 0 chr5 70992355 70992384 -81544875 + AT_rich Low_complexity Low_complexity 1 29 0 6 1126 366 217 41 8 chr5 70992430 70992551 -81544708 + Lx9 LINE L1 7520 7644 0 6 1126 252 109 31 52 chr5 70992676 70992773 -81544486 + (CAAA)n Simple_repeat Simple_repeat 2 96 0 6 1126 977 277 74 106 chr5 70992981 70993031 -81544228 - Lx3C LINE L1 -19 6978 6944 6 1126 765 85 0 0 chr5 70993031 70993137 -81544122 + (TC)n Simple_repeat Simple_repeat 2 107 0 6 1126 1394 277 74 103 chr5 70993137 70993604 -81543655 - Lx3C LINE L1 -25 6951 6479 6 1126 26 64 0 0 chr5 70993662 70993709 -81543550 + AT_rich Low_complexity Low_complexity 1 47 0 6 1126 384 246 40 40 chr5 70993769 70993921 -81543338 + Looper DNA PiggyBac 1407 1558 0 6 1126 194 128 26 0 chr5 70995288 70995327 -81541932 + A-rich Low_complexity Low_complexity 1 40 0 6 1126 4143 147 18 11 chr5 70996110 70996830 -81540429 - Lx LINE L1 -4 6650 5926 6 1126 29 70 0 0 chr5 70997630 70997687 -81539572 + AT_rich Low_complexity Low_complexity 1 57 0 6 1126 1501 258 53 25 chr5 70998597 70999110 -81538149 + RLTR11A2 LTR ERVK 1 527 0 6 1126 3405 28 2 0 chr5 70999390 70999785 -81537474 - MTA_Mm LTR MaLR 0 396 1 6 1126 1610 23 9 0 chr5 70999785 71000000 -81537259 - MTA_Mm-int LTR MaLR 0 1098 882 6 1126 6888 46 2 1 chr5 71000000 71000880 -81536379 - MTA_Mm-int LTR MaLR -217 881 1 1 1126 3405 28 2 0 chr5 71000880 71001275 -81535984 - MTA_Mm LTR MaLR 0 396 1 1 1126 27 73 0 0 chr5 71001574 71001629 -81535630 + AT_rich Low_complexity Low_complexity 1 55 0 2 1126 22 56 0 0 chr5 71001644 71001680 -81535579 + AT_rich Low_complexity Low_complexity 1 36 0 3 1126 1142 281 113 7 chr5 71002084 71002802 -81534457 - L1_Mur3 LINE L1 -854 5032 4168 4 1126 717 53 0 0 chr5 71002859 71002953 -81534306 + (TC)n Simple_repeat Simple_repeat 1 94 0 5 1126 28 0 0 0 chr5 71004252 71004280 -81532979 + AT_rich Low_complexity Low_complexity 1 28 0 6 1126 251 148 0 36 chr5 71004663 71004719 -81532540 + (CATA)n Simple_repeat Simple_repeat 3 56 0 7 1126 305 391 24 18 chr5 71004963 71005127 -81532132 + MLT1H LTR MaLR 64 228 -321 8 1126 2421 211 91 37 chr5 71005631 71006304 -81530955 + Lx7 LINE L1 6866 7574 -122 9 1126 826 216 172 11 chr5 71006303 71006570 -81530689 - RMER1B Other Other 0 1066 757 1 1126 1208 288 80 3 chr5 71006629 71006918 -81530341 + Lx5 LINE L1 6615 6925 -125 1 1126 1219 160 33 9 chr5 71006918 71007133 -81530126 + ORR1A3 LTR MaLR 95 314 -12 1 1126 385 287 87 87 chr5 71007308 71007457 -81529802 + Lx8 LINE L1 7151 7299 -174 1 1126 543 309 75 39 chr5 71008244 71008762 -81528497 + L1MC4a LINE L1 7094 7630 -252 1 1126 242 188 43 72 chr5 71008854 71008923 -81528336 + Kanga1 DNA Tc2 1071 1137 -608 1 1126 448 215 0 29 chr5 71009023 71009162 -81528097 + (TA)n Simple_repeat Simple_repeat 2 136 0 1 1126 206 244 8 0 chr5 71009395 71009514 -81527745 + GA-rich Low_complexity Low_complexity 2 121 0 1 1126 180 0 0 0 chr5 71010203 71010223 -81527036 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1 1126 266 0 29 0 chr5 71010315 71010349 -81526910 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1 1126 998 75 20 0 chr5 71010857 71011004 -81526255 + L1Md_F2 LINE L1 6431 6580 -2 2 1126 312 286 128 57 chr5 71011997 71012138 -81525121 - MER58B DNA MER1_type -3 338 188 2 1126 5275 119 15 6 chr5 71012138 71012730 -81524529 - Lx3_Mus LINE L1 -499 6510 5913 2 1126 483 33 0 0 chr5 71012730 71012791 -81524468 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1126 5275 119 15 6 chr5 71012791 71013010 -81524249 - Lx3_Mus LINE L1 -1097 5912 5693 2 1126 3156 85 9 2 chr5 71013010 71013456 -81523803 + Lx3_Mus LINE L1 6561 7009 0 2 1126 322 276 0 9 chr5 71013456 71013471 -81523788 - L1MD LINE L1 -2272 5723 5709 2 1126 299 290 129 41 chr5 71014131 71014325 -81522934 - MLT1E1 LTR MaLR -364 290 80 2 1126 351 256 137 6 chr5 71014353 71014510 -81522749 + B3 SINE B2 5 191 -25 2 1126 705 201 6 0 chr5 71014774 71014943 -81522316 - L1_Mur3 LINE L1 -4470 1410 1241 2 1126 21 71 0 0 chr5 71015309 71015351 -81521908 + AT_rich Low_complexity Low_complexity 1 42 0 2 1126 463 349 5 14 chr5 71015503 71015718 -81521541 + L1_Mur3 LINE L1 104 316 -7412 3 1126 1143 229 19 18 chr5 71015724 71016091 -81521168 + L1_Mur3 LINE L1 908 1221 -6507 3 1126 603 144 7 41 chr5 71016145 71016290 -81520969 + L1_Mur3 LINE L1 1187 1326 -6402 3 1126 2530 220 238 25 chr5 71016291 71017389 -81519870 + L1_Mur3 LINE L1 2727 4057 -1823 3 1126 808 255 28 14 chr5 71017395 71017651 -81519608 - ORR1A3-int LTR MaLR -1180 400 164 3 1126 1515 351 50 57 chr5 71017661 71018693 -81518566 - Lx8 LINE L1 -72 7401 6370 3 1126 736 175 230 21 chr5 71018693 71018880 -81518379 + URR1A DNA MER1_type 1 226 0 3 1126 1515 351 50 57 chr5 71018880 71019068 -81518191 - Lx8 LINE L1 -1104 6369 6190 3 1126 555 16 0 0 chr5 71019346 71019410 -81517849 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1126 801 337 66 4 chr5 71019477 71019733 -81517526 + B4 SINE B4 1 272 -20 3 1126 2248 84 29 43 chr5 71019980 71020329 -81516930 + L1Md_F2 LINE L1 6236 6579 -3 3 1126 3271 16 0 0 chr5 71021940 71022315 -81514944 - L1Md_F3 LINE L1 -14 6570 6196 3 1126 7145 104 3 58 chr5 71022324 71024064 -81513195 - L1_Mus1 LINE L1 -1 6566 4960 3 1126 3013 157 69 39 chr5 71024149 71024817 -81512442 - RMER6C LTR ERVK 0 690 3 3 1126 410 0 0 20 chr5 71025578 71025629 -81511630 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 1126 652 97 0 0 chr5 71025629 71025722 -81511537 - B1_Mus2 SINE Alu -10 137 45 4 1126 398 350 39 72 chr5 71025905 71026210 -81511049 + MLT1A0 LTR MaLR 1 295 -70 4 1126 30713 104 10 20 chr5 71026218 71032458 -81504801 + L1_Mus1 LINE L1 402 6567 0 4 1126 752 321 55 76 chr5 71032818 71033108 -81504151 + ORR1E LTR MaLR 69 352 -7 4 1126 8083 146 42 7 chr5 71033187 71034536 -81502723 + Lx2 LINE L1 5600 6995 -2 4 1126 23 33 0 0 chr5 71034900 71034930 -81502329 + AT_rich Low_complexity Low_complexity 1 30 0 4 1126 701 340 184 48 chr5 71035070 71035569 -81501690 - LTR69 LTR ERVL -12 576 11 4 1126 1772 208 15 54 chr5 71035585 71035787 -81501472 - ORR1C1 LTR MaLR 0 378 177 4 1126 644 67 11 0 chr5 71035787 71035877 -81501382 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 4 1126 1772 208 15 54 chr5 71035877 71036065 -81501194 - ORR1C1 LTR MaLR -202 176 4 4 1126 29 28 0 0 chr5 71036092 71036128 -81501131 + AT_rich Low_complexity Low_complexity 1 36 0 5 1126 523 242 59 34 chr5 71036280 71036464 -81500795 + MTE2b LTR MaLR 199 379 0 5 1126 275 72 0 23 chr5 71036793 71036836 -81500423 + (CATA)n Simple_repeat Simple_repeat 3 44 0 5 1126 303 28 0 0 chr5 71036850 71036886 -81500373 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1126 597 164 0 0 chr5 71036886 71037002 -81500257 + (TA)n Simple_repeat Simple_repeat 1 116 0 5 1126 2302 202 36 54 chr5 71037174 71037232 -81500027 + RLTR25A LTR ERVK 35 93 -1010 5 1126 207 0 0 0 chr5 71037232 71037255 -81500004 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 1126 2302 199 31 35 chr5 71037255 71037865 -81499394 + RLTR25A LTR ERVK 94 749 -279 5 1126 3021 36 65 0 chr5 71037866 71038252 -81499007 - IAPLTR2a LTR ERVK 0 411 1 5 1126 6419 60 12 11 chr5 71038254 71039082 -81498177 - IAPEz-int LTR ERVK -2 6479 5651 5 1126 10899 74 40 76 chr5 71039075 71040923 -81496336 - IAPEz-int LTR ERVK -4781 1700 9 5 140 3095 34 59 0 chr5 71040924 71041312 -81495947 - IAPLTR2a LTR ERVK 0 411 1 5 1127 851 199 126 93 chr5 71041569 71041847 -81495412 + RLTR25A LTR ERVK 742 1028 0 5 1127 453 177 0 0 chr5 71042104 71042200 -81495059 - Lx2A LINE L1 -5 7003 6908 5 1127 970 183 25 10 chr5 71042184 71042388 -81494871 - Lx2A LINE L1 -40 6968 6762 5 1127 504 0 0 0 chr5 71043394 71043450 -81493809 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1127 1026 68 0 0 chr5 71043452 71043584 -81493675 - B1_Mus1 SINE Alu -6 142 11 6 1127 537 252 58 77 chr5 71043584 71043606 -81493653 - B4 SINE B4 -71 220 70 6 1127 335 192 0 13 chr5 71043721 71043800 -81493459 + T-rich Low_complexity Low_complexity 1 78 0 6 1127 392 184 99 18 chr5 71043800 71043911 -81493348 - Lx2 LINE L1 -2 6995 6876 6 1127 271 213 181 0 chr5 71044095 71044189 -81493070 + Lx4A LINE L1 6948 7058 0 6 1127 441 305 21 21 chr5 71044888 71045032 -81492227 + RSINE1 SINE B4 3 146 -19 6 1127 205 197 28 0 chr5 71045156 71045227 -81492032 + GA-rich Low_complexity Low_complexity 1 73 0 6 1127 21 0 0 0 chr5 71046754 71046775 -81490484 + AT_rich Low_complexity Low_complexity 1 21 0 6 1127 22 99 0 0 chr5 71047012 71047083 -81490176 + AT_rich Low_complexity Low_complexity 1 71 0 6 1127 628 101 17 8 chr5 71047826 71047946 -81489313 - L1_Mus3 LINE L1 0 6638 6518 6 1127 679 265 112 40 chr5 71047948 71048172 -81489087 - Lx5 LINE L1 -11 7039 6800 7 1127 1581 80 58 12 chr5 71048188 71048430 -81488829 - L1_Mus3 LINE L1 -6 6632 6380 7 1127 524 283 84 25 chr5 71048430 71048496 -81488763 + MER45R DNA Tip100 766 828 -753 7 1127 441 0 0 0 chr5 71048496 71048545 -81488714 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1127 524 283 84 25 chr5 71048545 71048764 -81488495 + MER45R DNA Tip100 829 1068 -513 7 1127 324 0 0 0 chr5 71048765 71048801 -81488458 + (TATG)n Simple_repeat Simple_repeat 4 39 0 7 1127 482 342 99 37 chr5 71048825 71049098 -81488161 - B4A SINE B4 0 292 3 7 1127 284 228 18 0 chr5 71049131 71049188 -81488071 + MTC LTR MaLR 4 61 -360 7 1127 242 220 0 71 chr5 71049446 71049544 -81487715 + MER45R DNA Tip100 1100 1190 -391 7 1127 736 319 88 8 chr5 71049580 71049934 -81487325 - Lx8 LINE L1 -531 6942 6561 7 1127 845 311 76 47 chr5 71051561 71051743 -81485516 - Lx9 LINE L1 -331 7313 7131 7 1127 609 14 0 0 chr5 71051743 71051813 -81485446 + (TC)n Simple_repeat Simple_repeat 2 71 0 7 1127 1153 44 0 0 chr5 71051813 71051950 -81485309 - B1_Mm SINE Alu -10 137 1 8 1127 845 311 76 47 chr5 71051950 71052295 -81484964 - Lx9 LINE L1 -514 7130 6771 7 1127 3313 32 99 25 chr5 71052295 71052737 -81484522 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1127 4457 18 0 0 chr5 71052744 71053253 -81484006 + L1Md_A LINE L1 6074 6582 0 8 1127 995 124 25 84 chr5 71053255 71053457 -81483802 + IAPEz-int LTR ERVK 4 193 -6288 8 1127 245 309 0 0 chr5 71053457 71053512 -81483747 + RLTR27 LTR ERVK 221 275 -34 8 1127 3553 69 33 18 chr5 71053512 71054000 -81483259 + IAPEz-int LTR ERVK 168 662 -5819 8 1127 2159 76 0 4 chr5 71054000 71054279 -81482980 + IAPEz-int LTR ERVK 1359 1636 -4845 8 1127 5561 63 17 19 chr5 71054278 71055023 -81482236 + IAPEz-int LTR ERVK 5736 6479 -2 8 1127 3227 27 17 24 chr5 71055025 71055439 -81481820 + IAPLTR2a LTR ERVK 1 411 0 8 1127 619 333 91 28 chr5 71055440 71055792 -81481467 - Lx9 LINE L1 -870 6774 6401 7 1127 485 58 14 0 chr5 71055802 71055871 -81481388 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 8 1127 438 20 0 0 chr5 71055952 71056003 -81481256 + (TA)n Simple_repeat Simple_repeat 1 51 0 8 1127 882 39 8 15 chr5 71056035 71056165 -81481094 - L1Md_F2 LINE L1 -2 6580 6452 8 1127 213 241 46 0 chr5 71056287 71056374 -81480885 + (TTTAA)n Simple_repeat Simple_repeat 5 95 0 8 1127 711 267 56 31 chr5 71056385 71056713 -81480546 - Lx9 LINE L1 -1716 5928 5558 7 1127 3733 93 4 8 chr5 71056890 71057409 -81479850 - L1_Mus2 LINE L1 0 6566 6050 8 1127 546 81 0 0 chr5 71057409 71057483 -81479776 + L1_Mus2 LINE L1 6000 6073 -493 8 1127 871 61 8 8 chr5 71057491 71057624 -81479635 - L1Md_F3 LINE L1 -1 6583 6451 9 1127 365 330 11 58 chr5 71057627 71057817 -81479442 - Lx9 LINE L1 -310 7334 7154 9 1127 1466 103 90 4 chr5 71058094 71058327 -81478932 - L1_Mus2 LINE L1 0 6566 6314 9 1127 21 57 0 0 chr5 71059075 71059110 -81478149 + AT_rich Low_complexity Low_complexity 1 35 0 9 1127 288 316 82 33 chr5 71059160 71059343 -81477916 - MER2 DNA MER2_type -14 331 140 9 1127 1065 105 0 0 chr5 71059384 71059527 -81477732 + B1_Mus1 SINE Alu 5 147 -1 9 1127 1291 254 21 47 chr5 71060917 71061301 -81475958 + ORR1D1 LTR MaLR 1 374 0 9 1127 510 17 0 0 chr5 71062192 71062251 -81475008 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1127 405 0 0 0 chr5 71063384 71063429 -81473830 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 9 1127 1048 109 0 0 chr5 71063444 71063591 -81473668 - B1_Mus1 SINE Alu -1 147 1 9 1127 2259 204 63 0 chr5 71066280 71066756 -81470503 - RMER6D LTR ERVK -5 715 210 1 1127 1471 163 24 0 chr5 71066796 71067048 -81470211 - RLTR22_Mur LTR ERVK 0 1848 1591 1 1127 5020 110 16 32 chr5 71067238 71068057 -81469202 - RLTR22_Mur LTR ERVK -1042 806 1 1 1127 288 163 0 0 chr5 71068057 71068106 -81469153 - RMER6D LTR ERVK -671 49 1 1 1127 498 333 33 23 chr5 71068310 71068525 -81468734 - MLT1C LTR MaLR 0 467 251 1 1127 1132 294 102 30 chr5 71069614 71070172 -81467087 + MER67C LTR ERV1 9 606 -105 1 1127 224 378 20 8 chr5 71071096 71071247 -81466012 + MIR SINE MIR 54 210 -58 1 1127 23 0 0 0 chr5 71071469 71071492 -81465767 + AT_rich Low_complexity Low_complexity 1 23 0 1 1127 968 276 76 0 chr5 71071504 71071768 -81465491 - Lx6 LINE L1 -26 7434 7151 1 1127 604 241 47 47 chr5 71071959 71072097 -81465162 - Lx9 LINE L1 -327 7317 7179 1 1127 4587 141 229 10 chr5 71072097 71073011 -81464248 + RLTR13D3 LTR ERVK 1 1114 0 1 1127 604 241 47 47 chr5 71073011 71073042 -81464217 - Lx9 LINE L1 -466 7178 7148 1 1127 801 190 6 19 chr5 71073049 71073210 -81464049 + Lx9 LINE L1 7325 7483 -161 1 1127 33513 70 1 2 chr5 71073244 71078245 -81459014 + L1Md_F3 LINE L1 631 5586 -297 1 1127 8022 39 6 6 chr5 71078246 71079242 -81458017 + L1Md_F3 LINE L1 5588 6583 -1 1 1127 402 165 29 0 chr5 71079354 71079457 -81457802 + (TA)n Simple_repeat Simple_repeat 2 107 0 1 1127 262 315 18 108 chr5 71079670 71079837 -81457422 + MLT1A LTR MaLR 10 161 -213 1 1127 432 55 0 0 chr5 71080105 71080160 -81457099 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 1 1127 360 0 0 0 chr5 71080612 71080652 -81456607 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1127 462 36 0 0 chr5 71082284 71082340 -81454919 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1127 1789 218 196 23 chr5 71082410 71082971 -81454288 + Lx6 LINE L1 5204 5879 -1097 1 1127 23 0 0 0 chr5 71083289 71083312 -81453947 + AT_rich Low_complexity Low_complexity 1 23 0 1 1127 5011 108 7 12 chr5 71083421 71084158 -81453101 - Lx3_Mus LINE L1 -6 7003 6271 1 1127 287 287 11 0 chr5 71084205 71084292 -81452967 - Lx9 LINE L1 -229 7415 7328 1 1127 7451 47 1 9 chr5 71084391 71085317 -81451942 + L1Md_F2 LINE L1 5664 6582 0 1 1127 585 42 0 0 chr5 71085739 71085811 -81451448 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 1 1127 231 229 0 0 chr5 71086030 71086091 -81451168 + A-rich Low_complexity Low_complexity 1 61 0 1 1127 273 324 153 6 chr5 71086119 71086302 -81450957 + RMER5 LTR ERV1 33 242 -292 1 1127 22 35 0 0 chr5 71086313 71086342 -81450917 + AT_rich Low_complexity Low_complexity 1 29 0 1 1127 960 250 9 0 chr5 71087479 71087707 -81449552 - Lx6 LINE L1 0 7460 7231 1 1127 934 209 57 70 chr5 71087995 71088216 -81449043 - RLTR25A LTR ERVK 0 1103 885 1 1127 474 18 0 0 chr5 71088216 71088271 -81448988 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1127 934 209 57 70 chr5 71088271 71088347 -81448912 - RLTR25A LTR ERVK -219 884 810 1 1127 594 0 0 0 chr5 71088347 71088413 -81448846 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1127 414 146 0 0 chr5 71088454 71088536 -81448723 - Lx LINE L1 -5 6649 6568 1 1127 1084 133 21 0 chr5 71088537 71088725 -81448534 - Lx2 LINE L1 -875 6122 5931 1 1127 302 170 0 0 chr5 71088728 71088781 -81448478 - RLTR25A LTR ERVK -298 805 753 1 1127 872 114 6 19 chr5 71088930 71089091 -81448168 + (TTCC)n Simple_repeat Simple_repeat 2 160 0 1 1127 609 296 87 19 chr5 71089132 71089339 -81447920 - B4 SINE B4 -69 223 3 1 1127 744 69 0 10 chr5 71089554 71089656 -81447603 - L1Md_F2 LINE L1 -767 5815 5715 1 1127 6001 65 5 4 chr5 71089656 71090443 -81446816 + L1Md_F2 LINE L1 5783 6570 -12 1 1127 468 347 22 28 chr5 71090836 71091014 -81446245 + MTC LTR MaLR 8 184 -175 1 1127 435 235 0 0 chr5 71092819 71092938 -81444321 + GA-rich Low_complexity Low_complexity 3 121 0 1 1127 1167 117 0 0 chr5 71092940 71093120 -81444139 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1127 191 357 30 20 chr5 71093719 71093819 -81443440 - MIRc SINE MIR -143 125 25 1 1127 443 222 69 12 chr5 71094319 71094479 -81442780 - Lx9 LINE L1 -2 7642 7474 1 1127 938 209 70 8 chr5 71094475 71094716 -81442543 - Lx9 LINE L1 -111 7533 7278 1 1127 1292 188 80 0 chr5 71094720 71094970 -81442289 + ORR1A4 LTR MaLR 47 316 -13 1 1127 4561 223 84 132 chr5 71094976 71096274 -81440985 + ORR1A4-int LTR MaLR 1 1373 -419 1 1127 1418 193 86 212 chr5 71096274 71096419 -81440840 - RLTR19 LTR ERVK 0 499 319 1 1127 306 0 0 0 chr5 71096419 71096453 -81440806 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1127 1418 193 86 212 chr5 71096453 71096582 -81440677 - RLTR19 LTR ERVK -181 318 203 1 1127 828 30 0 0 chr5 71096582 71096681 -81440578 + (TTC)n Simple_repeat Simple_repeat 1 99 0 1 1127 1418 193 86 212 chr5 71096681 71096976 -81440283 - RLTR19 LTR ERVK -297 202 2 1 1127 4561 223 84 132 chr5 71096976 71097557 -81439702 + ORR1A4-int LTR MaLR 1374 1789 -3 1 1127 676 211 155 11 chr5 71097528 71097562 -81439697 + MTC LTR MaLR 208 242 -179 1 1127 1718 149 20 80 chr5 71097562 71097912 -81439347 + ORR1A4 LTR MaLR 1 329 0 1 1127 676 211 155 11 chr5 71097912 71098064 -81439195 + MTC LTR MaLR 243 420 -1 1 1127 241 423 49 41 chr5 71098594 71098838 -81438421 - MIRb SINE MIR -19 249 4 1 1127 5342 252 88 9 chr5 71099173 71099943 -81437316 - Lx6 LINE L1 -5 7455 6600 1 1127 329 0 24 0 chr5 71099943 71099984 -81437275 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1 1127 5342 252 88 9 chr5 71099984 71100636 -81436623 - Lx6 LINE L1 -861 6599 5920 1 1127 1293 183 85 118 chr5 71100642 71100947 -81436312 + ORR1B1 LTR MaLR 41 342 -52 1 1127 2479 93 18 37 chr5 71100947 71101327 -81435932 + L1_Mus1 LINE L1 6195 6567 0 1 1127 1293 183 85 118 chr5 71101327 71101387 -81435872 + ORR1B1 LTR MaLR 343 394 0 1 1127 863 209 35 22 chr5 71101389 71101619 -81435640 - Lx6 LINE L1 -1537 5923 5691 1 1127 931 209 133 30 chr5 71101621 71101922 -81435337 - Lx6 LINE L1 -770 5110 4778 1 1127 7769 228 85 27 chr5 71101903 71104811 -81432448 - Lx6 LINE L1 -2228 3652 571 1 1127 339 339 65 32 chr5 71104840 71105026 -81432233 - Lx6 LINE L1 -7090 638 447 1 1127 1917 293 41 44 chr5 71105065 71105729 -81431530 - Lx6 LINE L1 -5 7455 6794 1 1127 374 295 59 54 chr5 71106660 71106864 -81430395 + MER2 DNA MER2_type 10 214 -131 1 1127 892 261 118 12 chr5 71106954 71107276 -81429983 + MER67C LTR ERV1 356 711 0 1 1127 533 171 0 0 chr5 71107736 71107818 -81429441 - BC1_Mm scRNA scRNA -69 83 2 1 1127 1427 34 6 0 chr5 71109007 71109184 -81428075 + (TC)n Simple_repeat Simple_repeat 1 178 0 1 1127 628 357 64 26 chr5 71109258 71109600 -81427659 - MER70B LTR ERVL -213 365 11 1 1127 219 316 114 50 chr5 71109846 71109986 -81427273 + MIRc SINE MIR 77 225 -43 1 1127 22 70 0 0 chr5 71110717 71110760 -81426499 + AT_rich Low_complexity Low_complexity 1 43 0 1 1127 494 362 62 4 chr5 71111106 71111331 -81425928 + MER70B LTR ERVL 3 240 -338 1 1127 234 0 0 0 chr5 71111680 71111706 -81425553 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1127 1177 74 0 0 chr5 71111706 71111854 -81425405 - B1_Mus1 SINE Alu 0 148 1 1 1127 452 18 18 0 chr5 71112355 71112412 -81424847 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1127 354 98 0 0 chr5 71112509 71112560 -81424699 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1127 185 368 26 13 chr5 71112576 71112653 -81424606 + MIRb SINE MIR 4 81 -187 1 1127 333 0 0 0 chr5 71113024 71113061 -81424198 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1 1127 4073 195 155 23 chr5 71113082 71114122 -81423137 - RMER12 LTR ERVK -145 1177 1 1 1127 1222 280 25 38 chr5 71114707 71114771 -81422488 + ORR1D1 LTR MaLR 10 68 -306 1 1127 5195 65 28 20 chr5 71114771 71115479 -81421780 + L1_Mus2 LINE L1 5853 6566 0 1 1127 1222 280 25 38 chr5 71115479 71115782 -81421477 + ORR1D1 LTR MaLR 69 371 -3 1 1127 5172 53 3 0 chr5 71115800 71116445 -81420814 - L1Md_F2 LINE L1 0 6582 5936 1 1127 853 120 8 0 chr5 71116470 71116595 -81420664 + B1_Mus1 SINE Alu 1 126 -22 1 1127 456 19 0 0 chr5 71117476 71117529 -81419730 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1127 401 333 32 0 chr5 71118703 71118826 -81418433 + B1F1 SINE Alu 14 140 -9 1 1127 468 0 0 0 chr5 71118844 71118896 -81418363 + (TAA)n Simple_repeat Simple_repeat 3 54 0 1 1127 207 184 0 0 chr5 71119051 71119089 -81418170 + T-rich Low_complexity Low_complexity 3 40 0 1 1127 8038 148 23 21 chr5 71119093 71121241 -81416018 - Lx3A LINE L1 -2 6979 4842 1 1127 2807 132 2 0 chr5 71121227 71121636 -81415623 + Lx LINE L1 6124 6533 -121 1 1127 3973 105 22 2 chr5 71121642 71122245 -81415014 - L1_Mur1 LINE L1 -3020 2866 2252 1 1127 474 152 0 0 chr5 71123267 71123359 -81413900 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1127 476 209 23 0 chr5 71124360 71124532 -81412727 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1127 2856 52 0 3 chr5 71125770 71126117 -81411142 + ORR1A1 LTR MaLR 1 346 0 1 1127 288 346 31 0 chr5 71127125 71127252 -81410007 + L2 LINE L2 2815 2945 -474 1 1127 755 277 78 84 chr5 71127292 71127651 -81409608 - MTEa LTR MaLR -20 359 3 1 1127 24 53 0 0 chr5 71127943 71127981 -81409278 + AT_rich Low_complexity Low_complexity 1 38 0 1 1127 26 0 0 0 chr5 71128408 71128434 -81408825 + AT_rich Low_complexity Low_complexity 1 26 0 1 1127 741 23 0 0 chr5 71129174 71129261 -81407998 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 1 1127 219 284 48 36 chr5 71130023 71130107 -81407152 - RSINE1 SINE B4 0 165 81 1 1127 359 390 31 6 chr5 71130114 71130274 -81406985 - B3A SINE B2 -34 164 1 1 1127 432 364 56 0 chr5 71130757 71131007 -81406252 + LTR16B LTR ERVL 173 436 -27 1 1127 247 354 0 12 chr5 71131380 71131460 -81405799 - ID_B1 SINE B4 -48 176 98 1 1127 21 57 0 0 chr5 71131482 71131517 -81405742 + AT_rich Low_complexity Low_complexity 1 35 0 1 1127 288 374 9 36 chr5 71131534 71131645 -81405614 - RSINE1 SINE B4 -4 161 54 1 1127 718 316 109 33 chr5 71131893 71132197 -81405062 - MTD LTR MaLR -28 391 65 1 1127 344 287 60 17 chr5 71132308 71132425 -81404834 + B4A SINE B4 158 279 -13 1 1127 571 142 17 0 chr5 71132452 71132572 -81404687 + (CA)n Simple_repeat Simple_repeat 2 123 0 1 1127 189 0 0 0 chr5 71134582 71134603 -81402656 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1127 29 94 0 0 chr5 71134773 71134858 -81402401 + AT_rich Low_complexity Low_complexity 1 85 0 1 1127 305 198 12 0 chr5 71134883 71134969 -81402290 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 1 1127 2284 208 122 23 chr5 71134972 71135528 -81401731 + RMER19C LTR ERVK 1 611 0 1 1127 295 336 18 9 chr5 71135569 71135680 -81401579 + PB1D10 SINE Alu 6 117 0 1 1127 449 389 12 24 chr5 71136079 71136332 -81400927 + Lx9 LINE L1 6462 6711 -933 1 1127 22 35 0 0 chr5 71136753 71136782 -81400477 + AT_rich Low_complexity Low_complexity 1 29 0 2 1127 306 238 0 0 chr5 71136845 71136925 -81400334 + Lx6 LINE L1 7359 7438 -22 2 1127 28 0 0 0 chr5 71137066 71137094 -81400165 + AT_rich Low_complexity Low_complexity 1 28 0 2 1127 22 35 0 0 chr5 71137139 71137168 -81400091 + AT_rich Low_complexity Low_complexity 1 29 0 2 1127 2238 207 28 4 chr5 71137238 71137708 -81399551 + Lx5 LINE L1 6567 7047 -3 2 1127 5250 86 33 0 chr5 71137846 71138604 -81398655 + Lx3_Mus LINE L1 6227 7009 0 2 1127 245 366 35 9 chr5 71139436 71139549 -81397710 - PB1D9 SINE Alu 0 120 5 2 1127 21 0 0 0 chr5 71140139 71140160 -81397099 + AT_rich Low_complexity Low_complexity 1 21 0 2 1127 22 0 0 0 chr5 71140606 71140628 -81396631 + AT_rich Low_complexity Low_complexity 1 22 0 2 1127 506 349 5 51 chr5 71140783 71140979 -81396280 - B4A SINE B4 0 292 106 2 1127 30 45 0 0 chr5 71140981 71141025 -81396234 + AT_rich Low_complexity Low_complexity 1 44 0 2 1127 195 42 0 0 chr5 71142208 71142232 -81395027 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1127 24 0 0 0 chr5 71142968 71142992 -81394267 + AT_rich Low_complexity Low_complexity 1 24 0 2 1127 521 281 115 0 chr5 71143715 71143907 -81393352 - B3 SINE B2 -1 215 2 2 1127 21 82 0 0 chr5 71144981 71145030 -81392229 + AT_rich Low_complexity Low_complexity 1 49 0 2 1127 21 0 0 0 chr5 71146278 71146299 -81390960 + AT_rich Low_complexity Low_complexity 1 21 0 2 1127 339 335 79 60 chr5 71147237 71147453 -81389806 + B4 SINE B4 7 226 -66 2 1127 305 311 26 83 chr5 71148023 71148162 -81389097 + B3A SINE B2 63 198 0 2 1127 23 0 0 0 chr5 71148648 71148671 -81388588 + AT_rich Low_complexity Low_complexity 1 23 0 2 1127 324 0 0 0 chr5 71148884 71148920 -81388339 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1127 3121 111 28 0 chr5 71148945 71149415 -81387844 - Lx3_Mus LINE L1 0 7009 6527 2 1127 26 30 0 0 chr5 71151186 71151219 -81386040 + AT_rich Low_complexity Low_complexity 1 33 0 2 1127 1855 44 4 4 chr5 71152088 71152315 -81384944 + L1Md_F2 LINE L1 6064 6290 -292 2 1127 685 111 8 8 chr5 71152323 71152441 -81384818 - Lx2 LINE L1 -1 6996 6879 2 1127 36476 65 4 25 chr5 71152737 71158830 -81378429 + L1Md_T LINE L1 99 5586 -297 2 1127 7978 57 0 0 chr5 71158830 71159826 -81377433 + L1Md_T LINE L1 5587 6582 0 2 1127 22 0 0 0 chr5 71159826 71159848 -81377411 + AT_rich Low_complexity Low_complexity 1 22 0 2 1127 402 277 37 98 chr5 71159968 71160132 -81377127 + RSINE1 SINE B4 12 165 0 2 1127 1053 101 0 20 chr5 71160337 71160488 -81376771 + B1_Mus1 SINE Alu 1 148 0 2 1127 234 238 165 12 chr5 71160951 71161036 -81376223 + MIR SINE MIR 157 254 -8 2 1127 213 333 112 51 chr5 71161370 71161468 -81375791 - PB1D7 SINE Alu -1 119 16 2 1127 249 267 67 0 chr5 71161549 71161639 -81375620 - L1_Mur3 LINE L1 -1798 4082 3987 2 1127 193 109 21 21 chr5 71161654 71161701 -81375558 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2 1127 442 305 22 28 chr5 71161730 71161909 -81375350 - L1_Mur3 LINE L1 -1912 3968 3791 2 1127 774 307 52 25 chr5 71161966 71162330 -81374929 + L1_Rod LINE L1 5474 5847 0 2 1127 604 259 145 39 chr5 71162672 71162825 -81374434 + ORR1D1 LTR MaLR 1 169 -205 2 1127 492 18 0 0 chr5 71162825 71162882 -81374377 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1127 459 0 0 0 chr5 71162882 71162932 -81374327 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1127 604 259 145 39 chr5 71162932 71163115 -81374144 + ORR1D1 LTR MaLR 170 373 -1 2 1127 2203 306 121 28 chr5 71163149 71164304 -81372955 + Lx8 LINE L1 6109 7371 -102 2 1127 21 0 0 0 chr5 71164387 71164408 -81372851 + AT_rich Low_complexity Low_complexity 1 21 0 2 1127 1050 308 82 36 chr5 71164641 71165362 -81371897 + Lx9 LINE L1 6771 7524 -120 2 1127 230 390 34 14 chr5 71165927 71166075 -81371184 + MLT1J LTR MaLR 11 161 -351 2 1127 270 0 0 0 chr5 71166237 71166267 -81370992 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 1127 21 0 0 0 chr5 71166469 71166490 -81370769 + AT_rich Low_complexity Low_complexity 1 21 0 2 1127 670 286 31 36 chr5 71166735 71166927 -81370332 - B3 SINE B2 -25 191 1 2 1127 37 23 0 0 chr5 71167421 71167465 -81369794 + AT_rich Low_complexity Low_complexity 1 44 0 2 1127 3286 94 4 0 chr5 71168821 71169289 -81367970 - L1_Mus4 LINE L1 0 6636 6167 2 1127 536 0 16 0 chr5 71169596 71169660 -81367599 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1127 27 73 0 0 chr5 71170984 71171039 -81366220 + AT_rich Low_complexity Low_complexity 1 55 0 2 1127 481 281 40 25 chr5 71171394 71171595 -81365664 + Lx7 LINE L1 7483 7686 -10 2 1128 659 222 204 55 chr5 71172338 71172681 -81364578 + Lx9 LINE L1 7250 7643 -1 2 1128 676 262 37 73 chr5 71172871 71173054 -81364205 + B3 SINE B2 3 178 -38 2 1128 647 271 0 0 chr5 71173054 71173198 -81364061 + B1_Mur4 SINE Alu 2 145 -5 2 1128 676 262 37 73 chr5 71173198 71173232 -81364027 + B3 SINE B2 179 212 -4 2 1128 5891 5 0 0 chr5 71173791 71174486 -81362773 + L1Md_A LINE L1 5923 6582 0 2 1128 23 68 0 0 chr5 71175749 71175793 -81361466 + AT_rich Low_complexity Low_complexity 1 44 0 2 1128 22 56 0 0 chr5 71177704 71177740 -81359519 + AT_rich Low_complexity Low_complexity 1 36 0 2 1128 579 29 0 0 chr5 71178144 71178213 -81359046 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1128 21 0 0 0 chr5 71178225 71178246 -81359013 + AT_rich Low_complexity Low_complexity 1 21 0 2 1128 655 290 66 61 chr5 71178646 71179042 -81358217 - MLT2D LTR ERVL -14 400 3 2 1128 359 339 8 8 chr5 71179725 71179856 -81357403 + CT-rich Low_complexity Low_complexity 4 134 0 2 1128 22 0 0 0 chr5 71180057 71180079 -81357180 + AT_rich Low_complexity Low_complexity 1 22 0 2 1128 365 289 49 73 chr5 71180251 71180415 -81356844 + RSINE1 SINE B4 3 162 -3 2 1128 321 68 0 0 chr5 71181180 71181224 -81356035 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1128 1121 43 6 58 chr5 71181642 71181813 -81355446 + L1Md_F2 LINE L1 6421 6582 0 2 1128 562 123 47 0 chr5 71181822 71181928 -81355331 + L1_Mus4 LINE L1 6510 6620 -16 2 1128 1201 40 44 28 chr5 71181927 71182109 -81355150 + L1Md_F3 LINE L1 6399 6583 -1 2 1128 300 122 0 0 chr5 71182464 71182513 -81354746 - Lx2 LINE L1 -9 6988 6940 2 1128 243 61 0 0 chr5 71183700 71183733 -81353526 + (TATG)n Simple_repeat Simple_repeat 2 34 0 2 1128 499 296 86 0 chr5 71183740 71183892 -81353367 - B3 SINE B2 -38 178 14 2 1128 254 324 14 0 chr5 71183993 71184064 -81353195 + ID SINE ID 2 73 -151 2 1128 256 361 22 22 chr5 71184178 71184314 -81352945 + MLT1B LTR MaLR 11 146 -244 2 1128 390 350 28 28 chr5 71184354 71184536 -81352723 + B3A SINE B2 1 182 -16 2 1128 261 155 0 0 chr5 71184559 71184617 -81352642 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1128 28 29 0 0 chr5 71184686 71184721 -81352538 + AT_rich Low_complexity Low_complexity 1 35 0 2 1128 763 39 0 19 chr5 71184953 71185058 -81352201 + (TTC)n Simple_repeat Simple_repeat 3 105 0 2 1128 410 105 0 0 chr5 71185058 71185115 -81352144 - B1_Mus1 SINE Alu -91 57 1 2 1128 729 270 179 96 chr5 71185383 71185768 -81351491 - MTD LTR MaLR -2 417 1 2 1128 237 200 29 0 chr5 71186289 71186359 -81350900 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 1128 1622 208 29 7 chr5 71187133 71187537 -81349722 + Lx2B LINE L1 6554 6974 -2 2 1128 639 271 23 0 chr5 71189180 71189357 -81347902 - Lx9 LINE L1 -202 7442 7262 2 1128 2003 65 43 0 chr5 71189501 71189778 -81347481 + L1Md_F3 LINE L1 6296 6584 0 2 1128 29 0 0 0 chr5 71189778 71189807 -81347452 + AT_rich Low_complexity Low_complexity 1 29 0 2 1128 331 299 43 43 chr5 71190989 71191153 -81346106 + RNLTR23 LTR ERVK 479 642 0 2 1128 352 42 27 40 chr5 71191312 71191386 -81345873 + (CAAAA)n Simple_repeat Simple_repeat 3 75 0 2 1128 1107 254 27 7 chr5 71191468 71191765 -81345494 + RNERVK23-int LTR ERVK 235 537 -7680 2 1128 295 203 27 13 chr5 71191928 71192003 -81345256 + L1M5 LINE L1 3453 3528 -2618 2 1128 295 379 36 12 chr5 71192698 71193032 -81344227 + L1MC4 LINE L1 295 636 -5579 2 1128 687 101 0 0 chr5 71193621 71193720 -81343539 + B1_Mm SINE Alu 49 147 0 2 1128 486 169 0 0 chr5 71193720 71193809 -81343450 + A-rich Low_complexity Low_complexity 1 89 0 2 1128 25 51 0 0 chr5 71193856 71193895 -81343364 + AT_rich Low_complexity Low_complexity 1 39 0 2 1128 236 232 0 0 chr5 71193929 71193985 -81343274 + L1MC4 LINE L1 1472 1527 -4688 2 1128 1065 99 0 0 chr5 71194169 71194311 -81342948 + B1_Mm SINE Alu 1 142 -5 2 1128 202 29 0 54 chr5 71194313 71194350 -81342909 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1128 242 314 31 47 chr5 71194755 71194882 -81342377 + L1MC4 LINE L1 4547 4671 -1543 2 1128 218 215 51 0 chr5 71195167 71195246 -81342013 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 2 1128 1115 80 23 6 chr5 71195305 71195481 -81341778 + L1_Mus3 LINE L1 6459 6637 -1 2 1128 2624 131 35 2 chr5 71195725 71196154 -81341105 + Lx LINE L1 6205 6647 -7 2 1128 312 143 0 0 chr5 71196160 71196216 -81341043 + (GAA)n Simple_repeat Simple_repeat 3 58 0 2 1128 838 143 6 22 chr5 71196217 71196278 -81340981 + polypurine Low_complexity Low_complexity 3 63 0 2 1128 1229 56 6 16 chr5 71196278 71196460 -81340799 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1128 838 143 6 22 chr5 71196460 71196577 -81340682 + polypurine Low_complexity Low_complexity 64 178 0 2 1128 1085 119 0 6 chr5 71196563 71196690 -81340569 + (GGA)n Simple_repeat Simple_repeat 3 129 0 2 1128 1157 61 0 43 chr5 71196690 71196878 -81340381 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1128 1085 119 0 6 chr5 71196878 71196927 -81340332 + (GGA)n Simple_repeat Simple_repeat 1 48 0 2 1128 267 157 0 0 chr5 71196924 71196975 -81340284 + GA-rich Low_complexity Low_complexity 1 51 0 3 1128 432 196 94 6 chr5 71197066 71197246 -81340013 + RMER17C LTR ERVK 82 277 -133 3 1128 30274 102 20 32 chr5 71197261 71198770 -81338489 + L1Md_A LINE L1 482 1967 -3916 3 1128 226 0 0 56 chr5 71198770 71198806 -81338453 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1128 30274 62 36 33 chr5 71198806 71201615 -81335644 + L1Md_A LINE L1 1968 4897 -986 3 1128 226 288 28 64 chr5 71201615 71201756 -81335503 - MER72B LTR ERV1 -356 412 277 3 1128 30274 62 36 33 chr5 71201756 71202413 -81334846 + L1Md_A LINE L1 4898 5584 -299 3 1128 8175 33 12 0 chr5 71202414 71203397 -81333862 + L1Md_F3 LINE L1 5587 6581 -3 3 1128 681 326 103 46 chr5 71203441 71204263 -81332996 + L1MC4a LINE L1 6672 7540 -342 3 1128 1093 303 64 65 chr5 71204360 71205066 -81332193 + Lx7 LINE L1 6919 7623 -73 3 1128 423 153 0 0 chr5 71205182 71205280 -81331979 + GA-rich Low_complexity Low_complexity 1 98 0 3 1128 27 0 0 0 chr5 71206094 71206121 -81331138 + AT_rich Low_complexity Low_complexity 1 27 0 3 1128 25 0 0 0 chr5 71206576 71206601 -81330658 + AT_rich Low_complexity Low_complexity 1 25 0 3 1128 21 36 0 0 chr5 71207499 71207527 -81329732 + AT_rich Low_complexity Low_complexity 1 28 0 3 1128 4031 129 94 35 chr5 71209038 71209802 -81327457 - RMER17D2 LTR ERVK 0 809 1 3 1128 22 0 0 0 chr5 71209854 71209876 -81327383 + AT_rich Low_complexity Low_complexity 1 22 0 3 1128 9212 62 2 2 chr5 71210851 71212041 -81325218 + L1Md_F2 LINE L1 4397 5585 -298 3 1128 8159 41 0 2 chr5 71212042 71213037 -81324222 + L1Md_F2 LINE L1 5587 6579 -3 3 1128 36 40 0 0 chr5 71214742 71214792 -81322467 + AT_rich Low_complexity Low_complexity 1 50 0 3 1128 225 250 44 0 chr5 71215708 71215776 -81321483 + BLACKJACK DNA AcHobo 2874 2944 0 3 1128 27 0 0 0 chr5 71216666 71216693 -81320566 + AT_rich Low_complexity Low_complexity 1 27 0 3 1128 2568 289 21 43 chr5 71218031 71218823 -81318436 - Lx6 LINE L1 -28 7432 6658 3 1128 21 0 0 0 chr5 71218938 71218959 -81318300 + AT_rich Low_complexity Low_complexity 1 21 0 3 1128 360 0 0 0 chr5 71219237 71219277 -81317982 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1128 285 327 100 52 chr5 71219301 71219530 -81317729 - Lx7 LINE L1 -395 7301 7062 3 1128 585 69 0 0 chr5 71220517 71220604 -81316655 + (CA)n Simple_repeat Simple_repeat 1 87 0 3 1128 22 0 0 0 chr5 71220876 71220898 -81316361 + AT_rich Low_complexity Low_complexity 1 22 0 3 1128 864 296 138 42 chr5 71221118 71221771 -81315488 - Lx8 LINE L1 0 7473 6669 3 1128 221 43 85 0 chr5 71221771 71221818 -81315441 + (TATG)n Simple_repeat Simple_repeat 1 51 0 3 1128 1241 321 29 28 chr5 71221818 71222364 -81314895 - Lx8 LINE L1 -1028 6668 6127 3 1128 408 318 141 18 chr5 71222743 71223070 -81314189 - ORR1D2 LTR MaLR 0 370 4 3 1128 261 75 0 0 chr5 71223132 71223172 -81314087 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 3 1128 21 36 0 0 chr5 71223810 71223838 -81313421 + AT_rich Low_complexity Low_complexity 1 28 0 3 1128 1930 27 0 0 chr5 71224002 71224225 -81313034 + L1Md_T LINE L1 5364 5586 -297 3 1128 8495 32 0 0 chr5 71224225 71225221 -81312038 + L1Md_T LINE L1 5587 6582 0 3 1128 423 328 27 53 chr5 71225291 71225478 -81311781 - Lx8 LINE L1 -123 7350 7169 3 1128 21 36 0 0 chr5 71225661 71225689 -81311570 + AT_rich Low_complexity Low_complexity 1 28 0 3 1128 339 405 50 39 chr5 71225864 71226044 -81311215 - B3A SINE B2 -16 182 1 3 1128 284 371 0 0 chr5 71227485 71227574 -81309685 + L2b LINE L2 3285 3373 -2 3 1128 387 0 0 0 chr5 71228396 71228439 -81308820 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1128 2222 335 45 14 chr5 71228596 71229422 -81307837 + Lx9 LINE L1 6313 7169 -475 3 1128 1071 159 119 0 chr5 71229422 71229623 -81307636 - URR1A DNA MER1_type -1 225 1 3 1128 2222 335 45 14 chr5 71229623 71229783 -81307476 + Lx9 LINE L1 7170 7328 -316 3 1128 22 70 0 0 chr5 71231607 71231650 -81305609 + AT_rich Low_complexity Low_complexity 1 43 0 3 1128 183 306 44 44 chr5 71231782 71231895 -81305364 - MIRc SINE MIR -64 204 92 3 1128 210 167 0 59 chr5 71232843 71232894 -81304365 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 3 1128 191 88 0 29 chr5 71233895 71233930 -81303329 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 1128 28 0 0 0 chr5 71234012 71234040 -81303219 + AT_rich Low_complexity Low_complexity 1 28 0 3 1128 205 182 0 0 chr5 71236441 71236485 -81300774 + A-rich Low_complexity Low_complexity 1 44 0 3 1128 1223 85 0 11 chr5 71236527 71236706 -81300553 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 3 1128 224 267 0 0 chr5 71236714 71236759 -81300500 + G-rich Low_complexity Low_complexity 2 46 0 3 1128 1347 72 0 0 chr5 71236760 71236940 -81300319 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1128 5316 200 35 10 chr5 71237075 71238144 -81299115 - Lx5 LINE L1 -364 6686 5592 3 1128 1841 159 25 0 chr5 71238136 71238462 -81298797 + L1_Mur2 LINE L1 3493 3826 -2051 3 1128 3568 174 7 65 chr5 71238463 71239220 -81298039 + L1_Mur2 LINE L1 4413 5125 -752 3 1128 553 178 8 0 chr5 71239522 71239640 -81297619 + L1_Mur2 LINE L1 5147 5265 -612 3 1128 615 209 25 56 chr5 71239644 71239856 -81297403 - RMER6C LTR ERVK -401 289 1 3 1128 592 320 13 0 chr5 71240051 71240201 -81297058 + RSINE1 SINE B4 8 159 -6 3 1128 642 125 0 0 chr5 71240738 71240850 -81296409 + (TCTA)n Simple_repeat Simple_repeat 4 115 0 3 1128 872 84 8 0 chr5 71240890 71241021 -81296238 + (TAGA)n Simple_repeat Simple_repeat 1 132 0 3 1128 891 344 158 15 chr5 71241096 71241542 -81295717 - Lx8 LINE L1 -352 7121 6661 3 1128 5595 46 0 0 chr5 71241542 71242219 -81295040 + L1Md_F2 LINE L1 5893 6569 -13 3 1128 891 344 158 15 chr5 71242219 71242454 -81294805 - Lx8 LINE L1 -813 6660 6342 3 1128 183 239 0 0 chr5 71242474 71242520 -81294739 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 3 1128 255 297 20 0 chr5 71242615 71242716 -81294543 + Lx9 LINE L1 7542 7644 0 3 1128 207 204 0 0 chr5 71243209 71243253 -81294006 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1128 36 40 0 0 chr5 71243552 71243602 -81293657 + AT_rich Low_complexity Low_complexity 1 50 0 3 1128 259 368 87 14 chr5 71243758 71243896 -81293363 - MIR SINE MIR -89 173 26 3 1128 22 0 0 0 chr5 71244283 71244305 -81292954 + AT_rich Low_complexity Low_complexity 1 22 0 3 1128 468 0 0 0 chr5 71244496 71244548 -81292711 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 1128 24 0 0 0 chr5 71244622 71244646 -81292613 + AT_rich Low_complexity Low_complexity 1 24 0 3 1128 244 321 37 0 chr5 71244838 71244919 -81292340 - ORR1E LTR MaLR -5 354 271 3 1128 547 347 89 16 chr5 71245753 71246069 -81291190 + MLT1A0 LTR MaLR 16 354 -11 3 1128 255 61 0 0 chr5 71246855 71246888 -81290371 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 1128 189 0 0 0 chr5 71246888 71246908 -81290351 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1128 683 321 21 26 chr5 71247095 71247287 -81289972 - B3A SINE B2 -5 193 3 3 1128 39774 24 1 7 chr5 71248075 71254262 -81282997 - L1Md_A LINE L1 0 6582 441 3 1128 4133 211 63 9 chr5 71254333 71255384 -81281875 + Lx4B LINE L1 5882 7000 0 3 1128 315 303 64 30 chr5 71255841 71256219 -81281040 - L1M5 LINE L1 -476 5703 5312 3 1128 24 53 0 0 chr5 71256482 71256520 -81280739 + AT_rich Low_complexity Low_complexity 1 38 0 3 1128 1389 336 71 5 chr5 71256525 71257188 -81280071 + Lx8 LINE L1 6190 6896 -577 3 1128 884 279 97 3 chr5 71257205 71257493 -81279766 + Lx8 LINE L1 7002 7316 -157 3 1128 484 302 79 14 chr5 71257581 71257796 -81279463 + RLTR15 LTR ERVK 3 231 -128 3 1128 23 0 0 0 chr5 71257843 71257866 -81279393 + AT_rich Low_complexity Low_complexity 1 23 0 3 1128 1438 86 0 0 chr5 71258340 71258538 -81278721 + L1_Mus2 LINE L1 6368 6565 -1 3 1128 439 352 58 19 chr5 71258895 71259153 -81278106 + Lx8 LINE L1 7110 7377 -96 3 1128 180 0 0 0 chr5 71259482 71259502 -81277757 + (CCTG)n Simple_repeat Simple_repeat 1 20 0 3 1128 892 220 1 1 chr5 71259585 71259792 -81277467 + L1_Mur2 LINE L1 915 1115 -5523 3 1128 1365 182 38 18 chr5 71259815 71260157 -81277102 + L1_Mur2 LINE L1 1339 1687 -4190 3 1128 1334 215 1 38 chr5 71260155 71260543 -81276716 + Lx2B LINE L1 6625 6986 -11 3 1128 335 377 14 7 chr5 71260946 71261093 -81276166 - MIRb SINE MIR -105 163 16 3 1128 1386 240 101 14 chr5 71261956 71262323 -81274936 + MTD LTR MaLR 13 411 -8 3 1128 285 98 0 0 chr5 71262626 71262667 -81274592 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1128 184 352 110 0 chr5 71262965 71263056 -81274203 + L2c LINE L2 3247 3347 -40 3 1128 254 250 83 77 chr5 71263327 71263496 -81273763 - RMER13A LTR ERVK -161 747 578 3 1128 930 228 139 58 chr5 71263542 71263872 -81273387 - RMER13A LTR ERVK -432 428 72 3 1128 402 324 101 0 chr5 71266867 71267046 -81270213 + MER67A LTR ERV1 1 197 -346 3 1128 253 402 18 59 chr5 71267074 71267243 -81270016 + MER67A LTR ERV1 362 523 -138 3 1128 529 199 21 74 chr5 71267988 71268178 -81269081 + Lx9 LINE L1 7464 7643 -1 3 1128 493 93 0 0 chr5 71268814 71268889 -81268370 + Lx2 LINE L1 6923 6997 0 3 1128 281 255 9 0 chr5 71269680 71269899 -81267360 + (CA)n Simple_repeat Simple_repeat 1 221 0 3 1128 374 161 10 79 chr5 71269925 71270026 -81267233 - Lx9 LINE L1 -9 7635 7542 3 1128 678 25 0 0 chr5 71270058 71270138 -81267121 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1128 2393 132 2 20 chr5 71271152 71271546 -81265713 - Lx2 LINE L1 -4 6993 6607 3 1128 8760 157 32 13 chr5 71271546 71272542 -81264717 + L1_Mur2 LINE L1 3707 4735 -1142 3 1128 582 86 0 0 chr5 71272542 71272623 -81264636 + (CAAGA)n Simple_repeat Simple_repeat 2 82 0 3 1128 8760 157 32 13 chr5 71272623 71273252 -81264007 + L1_Mur2 LINE L1 4736 5363 -514 3 1128 198 0 0 0 chr5 71273464 71273486 -81263773 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1128 223 68 43 43 chr5 71273607 71273653 -81263606 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 3 1128 585 42 0 0 chr5 71273664 71273736 -81263523 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 1128 227 373 53 96 chr5 71273836 71274118 -81263141 - ORR1D2 LTR MaLR -36 334 65 3 1128 845 182 0 0 chr5 71275110 71275242 -81262017 - B1_Mus1 SINE Alu -10 138 7 3 1128 895 196 24 52 chr5 71275407 71275773 -81261486 + RMER6A LTR ERVK 472 704 -16 3 1128 1827 311 68 16 chr5 71275787 71276539 -81260720 - Lx8 LINE L1 -414 7059 6269 3 1128 3356 74 45 7 chr5 71276714 71277178 -81260081 - L1Md_F2 LINE L1 -3 6579 6098 4 1128 247 69 17 128 chr5 71277876 71277993 -81259266 + (CATATA)n Simple_repeat Simple_repeat 5 108 0 4 1128 504 287 108 42 chr5 71278070 71278310 -81258949 - MER46C DNA MER2_type -10 328 73 4 1128 252 0 0 0 chr5 71278774 71278802 -81258457 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1128 188 29 0 105 chr5 71278805 71278843 -81258416 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1128 1250 294 25 13 chr5 71279190 71279765 -81257494 - Lx8 LINE L1 -1562 6134 5549 3 1128 2734 230 31 6 chr5 71279764 71280463 -81256796 - Lx8 LINE L1 -917 4963 4247 3 1128 959 270 55 23 chr5 71280478 71280785 -81256474 + ORR1D1 LTR MaLR 1 317 -57 4 1128 899 158 6 0 chr5 71280787 71280959 -81256300 - Lx LINE L1 -35 6619 6467 4 1128 914 292 178 32 chr5 71280997 71281414 -81255845 + Lx7 LINE L1 6147 6624 -1072 4 1128 942 289 75 20 chr5 71281438 71281840 -81255419 + Lx7 LINE L1 6969 7392 -304 4 1128 220 219 0 0 chr5 71281934 71281975 -81255284 + GA-rich Low_complexity Low_complexity 3 43 0 4 1128 22 0 0 0 chr5 71282345 71282367 -81254892 + AT_rich Low_complexity Low_complexity 1 22 0 4 1128 256 380 16 8 chr5 71282452 71282574 -81254685 + B1F SINE Alu 4 126 -23 4 1128 198 0 0 0 chr5 71282585 71282607 -81254652 + (TAA)n Simple_repeat Simple_repeat 2 23 0 4 1128 22 35 0 0 chr5 71282964 71282993 -81254266 + AT_rich Low_complexity Low_complexity 1 29 0 4 1128 2621 105 137 59 chr5 71283627 71284102 -81253157 + RLTR1B LTR ERV1 1 512 0 4 1128 3378 161 37 75 chr5 71284204 71284967 -81252292 + Lx3C LINE L1 5671 6376 -600 4 1128 1554 196 68 27 chr5 71284967 71285335 -81251924 + Lx3C LINE L1 6592 6974 -2 4 1128 21 0 0 0 chr5 71285335 71285356 -81251903 + AT_rich Low_complexity Low_complexity 1 21 0 4 1128 239 344 11 32 chr5 71285472 71285565 -81251694 + MLT1E1A LTR MaLR 130 220 -460 4 1128 432 0 0 0 chr5 71285915 71285963 -81251296 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 4 1128 642 80 22 194 chr5 71285964 71286103 -81251156 + L1_Mus3 LINE L1 6153 6267 -371 4 1128 22 0 0 0 chr5 71287316 71287338 -81249921 + AT_rich Low_complexity Low_complexity 1 22 0 4 1128 221 331 97 78 chr5 71287773 71287860 -81249399 + B4 SINE B4 1 96 -196 4 1128 2596 86 89 15 chr5 71287860 71288251 -81249008 + RLTR9B2 LTR ERVK 1 420 0 4 1128 221 331 97 78 chr5 71288251 71288432 -81248827 + B4 SINE B4 97 274 -18 4 1128 473 71 0 14 chr5 71288464 71288535 -81248724 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1128 198 0 0 0 chr5 71288896 71288918 -81248341 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1128 7200 81 33 6 chr5 71289258 71290254 -81247005 + RLTR13D5 LTR ERVK 1 1023 0 4 1128 593 257 90 5 chr5 71290262 71290450 -81246809 + B3 SINE B2 1 204 -12 4 1128 231 36 0 0 chr5 71290707 71290735 -81246524 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1128 231 114 0 0 chr5 71290897 71290932 -81246327 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1128 863 83 8 16 chr5 71290933 71291056 -81246203 - B1_Mus1 SINE Alu -1 147 26 4 1128 764 300 121 25 chr5 71291293 71291742 -81245517 - RMER15 LTR ERVL 0 575 27 4 1128 540 292 27 98 chr5 71291891 71292115 -81245144 + B3 SINE B2 9 216 0 4 1128 22 0 0 0 chr5 71292368 71292390 -81244869 + AT_rich Low_complexity Low_complexity 1 22 0 4 1128 25 31 0 0 chr5 71293381 71293413 -81243846 + AT_rich Low_complexity Low_complexity 1 32 0 4 1128 21 82 0 0 chr5 71293773 71293822 -81243437 + AT_rich Low_complexity Low_complexity 1 49 0 4 1128 441 0 0 0 chr5 71294513 71294562 -81242697 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1128 198 0 0 0 chr5 71294562 71294583 -81242676 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1128 25 0 0 0 chr5 71294732 71294757 -81242502 + AT_rich Low_complexity Low_complexity 1 25 0 4 1128 3359 40 0 8 chr5 71294819 71295218 -81242041 + MTA_Mm LTR MaLR 1 396 0 4 1128 7417 58 50 83 chr5 71295218 71296353 -81240906 + MTA_Mm-int LTR MaLR 1 1098 0 4 1128 3293 46 2 0 chr5 71296353 71296748 -81240511 + MTA_Mm LTR MaLR 1 396 0 4 1128 2390 190 53 4 chr5 71296863 71297318 -81239941 - Lx2 LINE L1 -335 6662 6186 4 1128 315 173 0 0 chr5 71297317 71297369 -81239890 + Lx2 LINE L1 6146 6197 -800 4 1128 667 338 84 0 chr5 71297476 71297772 -81239487 - Lx5 LINE L1 -672 6378 6058 4 1128 1478 299 43 18 chr5 71297784 71298498 -81238761 + Lx5 LINE L1 6455 7432 -28 4 1128 489 314 101 109 chr5 71298721 71299097 -81238162 + MTEa LTR MaLR 3 375 -4 4 1128 22 0 0 0 chr5 71299128 71299150 -81238109 + AT_rich Low_complexity Low_complexity 1 22 0 4 1128 23 0 0 0 chr5 71299163 71299186 -81238073 + AT_rich Low_complexity Low_complexity 1 23 0 4 1128 681 123 0 0 chr5 71299328 71299434 -81237825 + (CATATA)n Simple_repeat Simple_repeat 3 108 0 4 1128 307 360 40 67 chr5 71300105 71300218 -81237041 + RSINE1 SINE B4 21 125 -40 4 1128 521 15 15 0 chr5 71300218 71300284 -81236975 + (TC)n Simple_repeat Simple_repeat 1 67 0 4 1128 307 360 40 67 chr5 71300284 71300319 -81236940 + RSINE1 SINE B4 126 164 -1 4 1128 3153 187 24 36 chr5 71301599 71302315 -81234944 - L1_Mur2 LINE L1 -515 5362 4656 4 1128 1389 143 13 18 chr5 71302318 71302545 -81234714 + Lx5 LINE L1 6209 6434 -616 4 17 5534 92 14 12 chr5 71302546 71303353 -81233906 + RLTR13C2 LTR ERVK 1 808 0 4 1129 2856 218 29 43 chr5 71303354 71303981 -81233278 + Lx5 LINE L1 6433 7050 0 4 1129 330 98 0 0 chr5 71304313 71304364 -81232895 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1129 2706 57 46 5 chr5 71304364 71304752 -81232507 - RLTR10A LTR ERVK 0 411 8 4 1129 459 0 0 0 chr5 71304752 71304803 -81232456 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1129 485 211 123 38 chr5 71305006 71305218 -81232041 - Lx9 LINE L1 0 7644 7415 4 1129 843 286 109 49 chr5 71306232 71306725 -81230534 + RLTR40 LTR ERVK 133 655 -162 4 1129 4080 110 156 6 chr5 71306751 71307455 -81229804 + Lx LINE L1 5845 6654 0 4 1129 733 257 69 35 chr5 71308561 71308612 -81228647 - L1_Rod LINE L1 -3132 2715 2661 4 1129 549 0 0 0 chr5 71308612 71308673 -81228586 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1129 733 257 69 35 chr5 71308673 71308911 -81228348 - L1_Rod LINE L1 -3187 2660 2416 4 1129 242 292 33 33 chr5 71308906 71308998 -81228261 + Lx9 LINE L1 7336 7427 -217 4 1129 2511 119 37 3 chr5 71309051 71309429 -81227830 - Lx3A LINE L1 -212 6769 6379 4 1129 7648 116 45 17 chr5 71309527 71311111 -81226148 - Lx3A LINE L1 -134 6847 5222 4 1129 900 171 0 52 chr5 71311111 71311321 -81225938 + Lx3A LINE L1 6776 6974 -7 4 1129 660 331 73 11 chr5 71311356 71311628 -81225631 - RCHARR1 DNA MER1_type -644 330 42 4 1129 1075 63 0 25 chr5 71311709 71311872 -81225387 - L1Md_F2 LINE L1 0 6582 6424 4 1129 28 29 0 0 chr5 71312544 71312579 -81224680 + AT_rich Low_complexity Low_complexity 1 35 0 4 1129 856 65 9 0 chr5 71312719 71312827 -81224432 - L1_Mus1 LINE L1 -117 6450 6342 4 1129 712 61 44 0 chr5 71312827 71312941 -81224318 + L1Md_F2 LINE L1 6450 6568 -14 4 1129 23 0 0 0 chr5 71312955 71312978 -81224281 + AT_rich Low_complexity Low_complexity 1 23 0 4 1129 341 327 114 25 chr5 71313350 71313545 -81223714 + ORR1E LTR MaLR 20 222 -148 4 1129 296 257 54 0 chr5 71313579 71313653 -81223606 + ORR1E LTR MaLR 282 359 0 4 1129 21 0 0 0 chr5 71313742 71313763 -81223496 + AT_rich Low_complexity Low_complexity 1 21 0 4 1129 556 344 37 22 chr5 71314267 71314588 -81222671 - Lx8 LINE L1 -199 7274 6949 4 1129 993 218 24 40 chr5 71314590 71314886 -81222373 + L1_Mur3 LINE L1 3640 3930 -1950 4 1129 5781 50 1 1 chr5 71315556 71316276 -81220983 + L1Md_F2 LINE L1 5860 6579 -3 4 1129 260 267 96 29 chr5 71316685 71316789 -81220470 + MIR SINE MIR 67 177 -85 4 1129 1293 91 0 4 chr5 71316805 71317041 -81220218 + (TTTC)n Simple_repeat Simple_repeat 1 234 0 4 1129 8656 125 12 34 chr5 71317041 71318468 -81218791 - Lx3A LINE L1 0 6981 5587 4 1129 352 262 0 0 chr5 71318556 71318636 -81218623 + MT2A LTR ERVL 1 80 -453 4 1129 1895 125 32 32 chr5 71318636 71318984 -81218275 - Lx LINE L1 -1 6653 6306 4 1129 387 155 0 0 chr5 71318984 71319042 -81218217 + Lx LINE L1 6216 6273 -381 4 1129 230 167 0 0 chr5 71319054 71319096 -81218163 + MT2A LTR ERVL 492 533 0 4 1129 697 303 64 15 chr5 71319282 71319671 -81217588 - L1MA9 LINE L1 -457 5855 5448 4 1129 448 302 124 58 chr5 71319758 71320226 -81217033 + L1M3 LINE L1 4316 4814 -1329 4 1129 207 214 24 0 chr5 71320552 71320594 -81216665 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 4 1129 594 261 86 46 chr5 71320595 71320920 -81216339 + L1M3 LINE L1 4968 5305 -835 4 1129 1863 72 211 7 chr5 71322232 71322540 -81214719 + L1_Mus3 LINE L1 6267 6637 -1 4 1129 2218 65 46 0 chr5 71323173 71323480 -81213779 + Lx3_Mus LINE L1 5826 6146 -863 4 1129 1613 123 12 19 chr5 71323480 71323738 -81213521 + Lx3_Mus LINE L1 6754 7009 0 4 1129 871 152 182 5 chr5 71324390 71324582 -81212677 + URR1A DNA MER1_type 1 226 0 4 1129 1220 266 122 15 chr5 71325143 71325720 -81211539 - Lx6 LINE L1 -731 6729 5857 4 1129 218 22 41 61 chr5 71325757 71325806 -81211453 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 4 1129 37 0 0 0 chr5 71327079 71327116 -81210143 + AT_rich Low_complexity Low_complexity 1 37 0 4 1129 5030 105 56 4 chr5 71328048 71328882 -81208377 - L1_Mus4 LINE L1 -278 6358 5485 4 1129 1972 87 4 4 chr5 71328882 71329158 -81208101 + L1_Mus4 LINE L1 6360 6635 -1 4 1129 3024 77 37 0 chr5 71329161 71329564 -81207695 + L1_Mus1 LINE L1 6150 6567 0 4 1129 52 78 0 0 chr5 71329564 71329679 -81207580 + AT_rich Low_complexity Low_complexity 1 115 0 4 1129 42 36 0 0 chr5 71329708 71329764 -81207495 + AT_rich Low_complexity Low_complexity 1 56 0 4 1129 1120 135 32 5 chr5 71329913 71330099 -81207160 - B2_Mm2 SINE B2 -3 192 2 4 1129 1411 305 73 38 chr5 71330147 71330886 -81206373 - Lx9 LINE L1 -20 7624 6860 4 1129 3117 122 8 45 chr5 71332488 71332687 -81204572 + Lx LINE L1 6141 6338 -316 4 1129 3427 25 0 5 chr5 71332687 71333085 -81204174 + MTA_Mm LTR MaLR 1 396 0 4 1129 3117 122 8 45 chr5 71333085 71333419 -81203840 + Lx LINE L1 6339 6654 0 4 1129 6058 98 16 7 chr5 71333577 71334465 -81202794 - L1_Mus4 LINE L1 -2 6634 5739 4 1129 1583 95 0 5 chr5 71334481 71334703 -81202556 - L1_Mus1 LINE L1 -1 6566 6346 4 1129 3940 170 3 3 chr5 71334704 71335405 -81201854 - L1_Mm LINE L1 -146 5737 5037 4 1129 630 57 0 117 chr5 71335794 71335914 -81201345 - L1_Mus1 LINE L1 0 6567 6462 4 1129 422 171 13 0 chr5 71336820 71336896 -81200363 - Lx2 LINE L1 -753 6244 6168 4 1129 5068 121 4 8 chr5 71336896 71337652 -81199607 + Lx2 LINE L1 6239 6991 -6 4 1129 1584 196 13 84 chr5 71337945 71338336 -81198923 + RMER1B Other Other 702 1064 -2 5 1129 684 78 0 0 chr5 71338578 71338681 -81198578 + L1_Mus2 LINE L1 6464 6566 0 5 1129 27 62 0 0 chr5 71338747 71338795 -81198464 + AT_rich Low_complexity Low_complexity 1 48 0 5 1129 1653 89 4 4 chr5 71339329 71339554 -81197705 - L1_Mus2 LINE L1 -113 6453 6229 5 1129 16440 149 29 20 chr5 71339567 71342660 -81194599 + L1VL1 LINE L1 392 3492 -2391 5 1129 3220 51 2 2 chr5 71342660 71343056 -81194203 + MTA_Mm LTR MaLR 1 396 0 5 1129 8766 53 3 2 chr5 71343056 71344153 -81193106 + MTA_Mm-int LTR MaLR 1 1098 0 5 1129 3175 53 2 12 chr5 71344153 71344553 -81192706 + MTA_Mm LTR MaLR 1 396 0 5 1129 16440 143 19 15 chr5 71344553 71345228 -81192031 + L1VL1 LINE L1 3493 4190 -1693 5 1129 201 74 0 0 chr5 71345228 71345255 -81192004 + (TA)n Simple_repeat Simple_repeat 1 27 0 5 1129 12080 243 25 93 chr5 71345255 71345414 -81191845 + L1Md_F3 LINE L1 4186 4301 -1579 5 1129 186 43 0 0 chr5 71345414 71345437 -81191822 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5 1129 12080 243 25 93 chr5 71345437 71345967 -81191292 + L1Md_F3 LINE L1 4302 4681 -1199 5 1129 723 33 0 0 chr5 71345967 71346057 -81191202 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1129 12080 243 25 93 chr5 71346057 71346187 -81191072 + L1Md_F3 LINE L1 4682 4760 -1120 5 1129 4483 75 24 7 chr5 71346187 71346804 -81190455 + L1_Mus2 LINE L1 5938 6565 -1 5 1129 12080 243 25 93 chr5 71346804 71347317 -81189942 + L1Md_F3 LINE L1 4761 5174 -706 5 1129 5244 41 3 22 chr5 71347317 71347984 -81189275 - L1Md_F3 LINE L1 0 6584 5931 5 1129 12080 137 13 49 chr5 71347984 71348749 -81188510 + L1Md_F3 LINE L1 5175 5948 -636 5 1129 2297 163 52 5 chr5 71349072 71349460 -81187799 + Lx4A LINE L1 6530 6935 -123 5 1129 687 102 23 0 chr5 71349464 71349592 -81187667 + (TAGA)n Simple_repeat Simple_repeat 1 131 0 5 1129 22 0 0 0 chr5 71349925 71349947 -81187312 + AT_rich Low_complexity Low_complexity 1 22 0 5 1129 26 0 0 0 chr5 71349983 71350009 -81187250 + AT_rich Low_complexity Low_complexity 1 26 0 5 1129 566 318 35 6 chr5 71350417 71350588 -81186671 - B3A SINE B2 -21 177 2 5 1129 417 121 0 0 chr5 71351036 71351119 -81186140 + (T)n Simple_repeat Simple_repeat 1 83 0 5 1129 585 0 0 0 chr5 71351482 71351547 -81185712 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1129 1284 89 0 0 chr5 71352056 71352236 -81185023 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1129 354 138 0 0 chr5 71352239 71352297 -81184962 + (TCC)n Simple_repeat Simple_repeat 3 60 0 5 1129 25 0 0 0 chr5 71353593 71353618 -81183641 + AT_rich Low_complexity Low_complexity 1 25 0 5 1129 259 334 31 46 chr5 71354323 71354511 -81182748 + L2a LINE L2 3205 3372 -54 5 1129 238 274 50 40 chr5 71354995 71355094 -81182165 + MIR SINE MIR 88 187 -75 5 1129 449 211 53 0 chr5 71355181 71355295 -81181964 - URR1B DNA MER1_type -27 198 79 5 1129 237 292 0 33 chr5 71355387 71355417 -81181842 - URR1B DNA MER1_type -132 93 65 5 1129 2773 83 13 0 chr5 71355417 71355791 -81181468 - L1_Mus2 LINE L1 0 6566 6188 5 1129 237 292 0 33 chr5 71355791 71355852 -81181407 - URR1B DNA MER1_type -161 64 5 5 1129 1168 336 90 12 chr5 71356817 71357392 -81179867 + Lx8 LINE L1 6429 7048 -425 5 1129 339 268 88 47 chr5 71358354 71358546 -81178713 + Lx8 LINE L1 7274 7473 0 5 1129 1231 74 0 11 chr5 71358947 71359125 -81178134 + (TCTCCC)n Simple_repeat Simple_repeat 3 178 0 5 1129 630 361 12 0 chr5 71359217 71359458 -81177801 + L4 LINE RTE 1375 1618 -411 5 1129 32 43 0 0 chr5 71359717 71359763 -81177496 + AT_rich Low_complexity Low_complexity 1 46 0 5 1129 912 208 18 92 chr5 71359848 71360076 -81177183 + B3 SINE B2 1 211 -5 5 1129 25 0 0 0 chr5 71361399 71361424 -81175835 + AT_rich Low_complexity Low_complexity 1 25 0 5 1129 574 302 9 28 chr5 71361445 71361656 -81175603 - B3 SINE B2 -8 208 2 5 1129 21 0 0 0 chr5 71363403 71363424 -81173835 + AT_rich Low_complexity Low_complexity 1 21 0 5 1129 4418 95 19 8 chr5 71365484 71366121 -81171138 + Lx3_Mus LINE L1 6365 7008 -1 5 1129 24 0 0 0 chr5 71366122 71366146 -81171113 + AT_rich Low_complexity Low_complexity 1 24 0 5 1129 550 125 0 0 chr5 71366815 71366895 -81170364 + MTC LTR MaLR 3 82 -339 5 1129 5801 166 26 4 chr5 71366903 71367894 -81169365 + Lx4A LINE L1 6042 7054 -4 5 1129 1696 266 21 36 chr5 71367935 71368410 -81168849 + Lx6 LINE L1 6993 7460 0 5 1129 1696 132 24 7 chr5 71368477 71368767 -81168492 - Lx LINE L1 0 6654 6360 5 1129 1618 185 20 0 chr5 71368778 71369070 -81168189 + MTC LTR MaLR 104 401 -20 5 1129 296 326 26 59 chr5 71369314 71369467 -81167792 + RSINE1 SINE B4 5 152 -13 5 1129 585 0 0 0 chr5 71369467 71369532 -81167727 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 5 1129 235 270 27 13 chr5 71370778 71370853 -81166406 - L1M4 LINE L1 -4745 1995 1920 5 1129 1644 21 0 0 chr5 71370861 71371047 -81166212 - B2_Mm1a SINE B2 -6 187 2 5 1129 6061 87 1 27 chr5 71371095 71371958 -81165301 - L1Md_F2 LINE L1 -12 6570 5730 5 1129 418 336 87 73 chr5 71371950 71372535 -81164724 - L1M4 LINE L1 -5585 957 365 5 1129 650 122 0 9 chr5 71372582 71372690 -81164569 + (TATG)n Simple_repeat Simple_repeat 4 110 0 5 1129 468 335 18 12 chr5 71372736 71372902 -81164357 - B4A SINE B4 -18 274 108 5 1129 394 378 28 28 chr5 71373030 71373278 -81163981 - L1M4 LINE L1 -6280 262 15 5 1129 21 0 0 0 chr5 71374078 71374099 -81163160 + AT_rich Low_complexity Low_complexity 1 21 0 5 1129 33 66 0 0 chr5 71374117 71374178 -81163081 + AT_rich Low_complexity Low_complexity 1 61 0 5 1129 1057 318 48 28 chr5 71374366 71374868 -81162391 - Lx9 LINE L1 -158 7486 6975 5 1129 477 0 0 0 chr5 71374871 71374924 -81162335 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1129 1477 302 87 2 chr5 71374929 71375434 -81161825 - Lx9 LINE L1 -739 6905 6358 5 1129 289 75 38 0 chr5 71375457 71375510 -81161749 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1129 669 81 29 14 chr5 71375513 71375651 -81161608 + (TAGA)n Simple_repeat Simple_repeat 2 141 0 5 1129 717 294 56 5 chr5 71375679 71375874 -81161385 + B3 SINE B2 1 205 -11 5 1129 21 71 0 0 chr5 71375887 71375929 -81161330 + AT_rich Low_complexity Low_complexity 1 42 0 5 1129 214 264 18 9 chr5 71375967 71376078 -81161181 + (TTTA)n Simple_repeat Simple_repeat 3 114 0 5 1129 215 260 0 0 chr5 71376421 71376471 -81160788 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1129 959 322 59 3 chr5 71376498 71376856 -81160403 + Lx9 LINE L1 6383 6760 -884 5 1129 1231 267 76 86 chr5 71376878 71377376 -81159883 + Lx9 LINE L1 6989 7510 -134 5 1129 347 92 0 15 chr5 71377376 71377442 -81159817 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1129 1231 267 76 86 chr5 71377442 71377585 -81159674 + Lx9 LINE L1 7511 7623 -21 5 1129 1448 126 1 3 chr5 71378208 71378435 -81158824 + Lx LINE L1 6130 6329 -325 5 1129 315 0 0 0 chr5 71378957 71378992 -81158267 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1129 364 221 7 7 chr5 71378993 71379143 -81158116 + GA-rich Low_complexity Low_complexity 2 151 0 5 1129 380 319 47 47 chr5 71380800 71380948 -81156311 - B1F1 SINE Alu -1 148 1 5 1129 432 303 72 45 chr5 71380952 71381304 -81155955 - L1MCb LINE L1 -4925 1735 1383 5 1129 383 301 127 55 chr5 71381375 71381705 -81155554 - L1MCb LINE L1 -4865 1180 827 5 1129 456 299 48 26 chr5 71382234 71382505 -81154754 - L1MCb LINE L1 -5768 277 1 5 1129 423 56 0 0 chr5 71383640 71383694 -81153565 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1129 281 261 0 43 chr5 71383700 71383792 -81153467 + GA-rich Low_complexity Low_complexity 1 88 0 5 1129 202 444 0 8 chr5 71383971 71384096 -81153163 - MIR SINE MIR -125 137 14 5 1129 196 298 0 0 chr5 71384253 71384300 -81152959 + L3 LINE CR1 792 838 -3651 5 1129 444 37 0 0 chr5 71386358 71386412 -81150847 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1129 233 169 0 17 chr5 71387353 71387413 -81149846 + CT-rich Low_complexity Low_complexity 1 59 0 5 1129 1584 214 27 41 chr5 71387691 71388056 -81149203 + Lx5 LINE L1 6675 7034 -16 5 1129 219 69 0 0 chr5 71388056 71388085 -81149174 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 5 1129 258 32 0 0 chr5 71388493 71388524 -81148735 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1129 209 217 23 46 chr5 71389296 71389383 -81147876 + (AATTG)n Simple_repeat Simple_repeat 1 85 0 5 1129 197 311 66 28 chr5 71389765 71389871 -81147388 - MIR SINE MIR -88 174 65 5 1129 3192 242 29 21 chr5 71390034 71390799 -81146460 + Lx6 LINE L1 6511 7281 -179 5 1129 432 0 0 0 chr5 71390978 71391026 -81146233 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1129 1015 88 6 6 chr5 71391169 71391340 -81145919 + (TC)n Simple_repeat Simple_repeat 2 172 0 5 1129 288 242 45 15 chr5 71391419 71391486 -81145773 - B4 SINE B4 -4 288 220 5 1129 216 0 0 0 chr5 71391512 71391536 -81145723 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1129 484 327 71 40 chr5 71391565 71391754 -81145505 - B4 SINE B4 -59 233 48 5 1129 270 0 0 0 chr5 71391754 71391784 -81145475 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1129 484 327 71 40 chr5 71391784 71391820 -81145439 - B4 SINE B4 -245 47 2 5 1129 490 293 104 30 chr5 71392442 71393290 -81143969 - L1M3 LINE L1 -2581 3565 2655 5 1129 301 244 18 29 chr5 71394013 71394114 -81143145 - Lx7 LINE L1 -15 7681 7606 5 1129 315 0 0 0 chr5 71394174 71394209 -81143050 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1129 215 213 13 0 chr5 71394298 71394373 -81142886 + GA-rich Low_complexity Low_complexity 1 76 0 5 1129 3418 43 0 0 chr5 71395164 71395580 -81141679 - L1Md_F2 LINE L1 -12 6570 6155 5 1129 504 0 0 0 chr5 71395815 71395871 -81141388 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1129 468 0 0 0 chr5 71397593 71397645 -81139614 + (TA)n Simple_repeat Simple_repeat 2 53 0 5 1129 354 266 64 9 chr5 71398336 71398446 -81138813 - MER5A1 DNA MER1_type -4 162 47 5 1129 4467 48 0 0 chr5 71398496 71399040 -81138219 + L1Md_F2 LINE L1 6038 6581 -1 5 1129 236 319 62 21 chr5 71400211 71400307 -81136952 - LTR86A2 LTR ERVL -380 128 29 5 1129 579 309 18 6 chr5 71401490 71401659 -81135600 + B3A SINE B2 3 173 -25 5 1129 21 0 0 0 chr5 71406275 71406296 -81130963 + AT_rich Low_complexity Low_complexity 1 21 0 5 1129 766 146 13 7 chr5 71406304 71406456 -81130803 - L1_Mus4 LINE L1 -39 6597 6445 5 1129 390 182 0 0 chr5 71406814 71406924 -81130335 + CT-rich Low_complexity Low_complexity 1 110 0 5 1129 2676 106 5 0 chr5 71407114 71407483 -81129776 + Lx LINE L1 5930 6300 -354 5 1129 3373 30 133 0 chr5 71407483 71407911 -81129348 + L1Md_F3 LINE L1 6098 6582 -2 5 1129 2027 117 77 15 chr5 71407915 71408253 -81129006 + Lx LINE L1 6294 6652 -2 5 1129 207 100 0 0 chr5 71408257 71408287 -81128972 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 5 1129 31 0 0 0 chr5 71408337 71408368 -81128891 + AT_rich Low_complexity Low_complexity 1 31 0 5 1129 689 240 38 33 chr5 71409297 71409508 -81127751 + L1_Mur2 LINE L1 541 752 -5960 6 1129 276 30 0 0 chr5 71409885 71409918 -81127341 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 6 1129 1072 67 0 0 chr5 71410248 71410383 -81126876 + B1_Mus1 SINE Alu 1 135 -13 6 1129 372 22 0 0 chr5 71410383 71410428 -81126831 + (CAA)n Simple_repeat Simple_repeat 1 45 0 6 1129 393 22 0 0 chr5 71411699 71411745 -81125514 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 6 1129 744 166 0 0 chr5 71412203 71412342 -81124917 + (TA)n Simple_repeat Simple_repeat 1 139 0 6 1129 346 306 124 6 chr5 71412734 71412895 -81124364 + Charlie7 DNA MER1_type 584 763 -1849 6 1129 294 276 107 49 chr5 71414679 71414987 -81122272 + L1M2 LINE L1 5292 5617 -683 6 1129 437 151 12 0 chr5 71416137 71416223 -81121036 + (TGAA)n Simple_repeat Simple_repeat 1 87 0 6 1129 423 0 0 0 chr5 71416985 71417032 -81120227 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1129 184 406 25 37 chr5 71417102 71417263 -81119996 - L2b LINE L2 -233 3142 2984 6 1129 394 307 16 8 chr5 71417795 71417923 -81119336 - MTE2a LTR MaLR -52 327 199 6 1129 410 346 23 64 chr5 71417985 71418204 -81119055 - B3 SINE B2 -3 213 4 6 1129 2237 160 40 2 chr5 71419068 71419470 -81117789 - Lx4A LINE L1 0 7058 6642 6 1129 204 269 19 28 chr5 71420961 71421068 -81116191 + (TATATG)n Simple_repeat Simple_repeat 5 110 0 6 1129 227 345 17 118 chr5 71421406 71421811 -81115448 - Lx9 LINE L1 -25 7619 7256 6 1129 3195 189 43 22 chr5 71421827 71422498 -81114761 + Lx3C LINE L1 6290 6974 -2 6 1129 254 73 0 24 chr5 71422508 71422550 -81114709 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1129 357 82 0 0 chr5 71422575 71422624 -81114635 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1129 22 94 0 0 chr5 71424357 71424421 -81112838 + AT_rich Low_complexity Low_complexity 1 64 0 6 1129 855 110 26 7 chr5 71424512 71424667 -81112592 + (TTCCC)n Simple_repeat Simple_repeat 2 159 0 6 1129 3375 131 39 18 chr5 71424723 71425282 -81111977 - L1_Mus4 LINE L1 -2 6634 6064 6 1129 211 205 0 25 chr5 71425326 71425366 -81111893 - B1_Mus1 SINE Alu -109 39 1 6 1129 389 252 8 0 chr5 71425630 71425749 -81111510 + (TA)n Simple_repeat Simple_repeat 2 121 0 6 1129 180 152 0 0 chr5 71425749 71425782 -81111477 + GA-rich Low_complexity Low_complexity 1 33 0 6 1129 4551 73 3 2 chr5 71426245 71426852 -81110407 - L1Md_T LINE L1 -1 6581 5974 6 1129 21 57 0 0 chr5 71427156 71427191 -81110068 + AT_rich Low_complexity Low_complexity 1 35 0 6 1129 299 367 50 12 chr5 71427973 71428133 -81109126 + MER45A DNA Tip100 2 167 -11 6 1129 864 321 38 36 chr5 71428529 71428972 -81108287 - Lx9 LINE L1 -777 6867 6424 6 1129 510 31 0 0 chr5 71428994 71429058 -81108201 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1129 477 289 19 13 chr5 71429213 71429371 -81107888 - Lx9 LINE L1 -1645 5999 5841 6 1129 477 278 77 20 chr5 71429368 71429563 -81107696 + Lx9 LINE L1 7085 7290 -354 6 1129 291 283 33 0 chr5 71429611 71429703 -81107556 + Lx7 LINE L1 7598 7692 -4 6 1129 21 0 0 0 chr5 71429705 71429726 -81107533 + AT_rich Low_complexity Low_complexity 1 21 0 6 1129 468 336 23 0 chr5 71431834 71431965 -81105294 - B1F SINE Alu -7 142 9 6 1129 237 272 91 57 chr5 71432003 71432299 -81104960 + RLTR21 LTR ERVK 959 1264 -308 6 1129 22 0 0 0 chr5 71432384 71432406 -81104853 + AT_rich Low_complexity Low_complexity 1 22 0 6 1129 400 196 58 19 chr5 71432802 71432906 -81104353 - L1M4 LINE L1 -3444 3200 3093 6 1129 1199 36 0 0 chr5 71433090 71433230 -81104029 + B1_Mus2 SINE Alu 1 140 -7 6 1129 195 42 0 0 chr5 71433232 71433256 -81104003 + (A)n Simple_repeat Simple_repeat 1 24 0 6 141 1729 126 3 48 chr5 71433987 71434280 -81102979 + Lx3C LINE L1 6342 6621 -355 6 1130 1184 194 12 32 chr5 71434278 71434528 -81102731 + Lx3C LINE L1 6729 6973 -3 6 1130 237 318 71 102 chr5 71434765 71435175 -81102084 - L1M4 LINE L1 -6128 414 18 6 1130 2927 71 31 41 chr5 71435544 71435979 -81101280 - L1_Mus1 LINE L1 -157 6497 6026 6 1130 369 148 0 0 chr5 71436389 71436470 -81100789 + (GA)n Simple_repeat Simple_repeat 1 81 0 6 1130 624 275 41 96 chr5 71436503 71436817 -81100442 + RMER5 LTR ERV1 1 297 -237 6 1130 599 270 74 0 chr5 71436825 71436988 -81100271 + Lx6 LINE L1 6948 7122 -338 6 1130 307 382 26 10 chr5 71437600 71437793 -81099466 + L1M2 LINE L1 4821 5016 -1127 6 1130 1186 312 27 27 chr5 71437908 71438574 -81098685 + L1M2 LINE L1 3509 4174 -1969 6 1130 540 211 9 46 chr5 71438585 71438694 -81098565 + B1_Mur3 SINE Alu 35 139 -10 6 1130 315 0 0 0 chr5 71438694 71438729 -81098530 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1130 271 0 0 0 chr5 71438757 71438787 -81098472 - L1_Mm LINE L1 -212 5671 5642 6 1130 16308 30 8 1 chr5 71438785 71441425 -81095834 - L1Md_A LINE L1 0 6582 3923 6 1130 7166 53 1 1 chr5 71441425 71442325 -81094934 + L1Md_F2 LINE L1 5670 6569 -13 6 1130 1004 280 67 57 chr5 71442358 71443012 -81094247 + L1M2 LINE L1 4174 4834 -1306 6 1130 496 283 62 26 chr5 71443029 71443402 -81093857 + L1M2 LINE L1 5208 5594 -718 6 1130 212 211 14 0 chr5 71443604 71443675 -81093584 + CT-rich Low_complexity Low_complexity 1 72 0 6 1130 767 320 65 0 chr5 71444692 71444923 -81092336 + B4A SINE B4 6 251 -41 6 1130 242 95 24 0 chr5 71446121 71446163 -81091096 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 6 1130 224 204 0 34 chr5 71446421 71446489 -81090770 + T-rich Low_complexity Low_complexity 1 65 0 6 1130 356 188 0 66 chr5 71446515 71446606 -81090653 + Lx7 LINE L1 7367 7451 -245 6 1130 255 61 0 0 chr5 71446958 71446991 -81090268 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 6 1130 405 0 0 0 chr5 71447231 71447276 -81089983 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1130 240 35 0 0 chr5 71447327 71447356 -81089903 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 6 1130 180 0 0 0 chr5 71447358 71447378 -81089881 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1130 1949 138 60 0 chr5 71447454 71447787 -81089472 - Lx2 LINE L1 0 6997 6645 6 1130 204 273 0 43 chr5 71447846 71447915 -81089344 + GA-rich Low_complexity Low_complexity 2 67 0 6 1130 1030 279 115 28 chr5 71448276 71448745 -81088514 - Lx8 LINE L1 -1 7472 6963 6 1130 224 59 29 0 chr5 71450363 71450397 -81086862 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 6 1130 1794 122 102 92 chr5 71450627 71451097 -81086162 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1130 261 365 65 42 chr5 71451124 71451430 -81085829 + L2a LINE L2 2669 2981 -438 6 1130 227 339 41 97 chr5 71451544 71451740 -81085519 + L2a LINE L2 3129 3313 -113 6 1130 399 21 0 0 chr5 71451928 71451976 -81085283 + (TTG)n Simple_repeat Simple_repeat 2 49 0 6 1130 362 260 160 34 chr5 71452294 71452309 -81084950 - B3A SINE B2 0 198 184 6 1130 350 115 16 0 chr5 71452309 71452370 -81084889 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1130 450 0 0 0 chr5 71452370 71452419 -81084840 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1130 362 260 160 34 chr5 71452419 71452577 -81084682 - B3A SINE B2 -15 183 3 6 1130 25 51 0 0 chr5 71452580 71452619 -81084640 + AT_rich Low_complexity Low_complexity 1 39 0 6 1130 576 42 0 0 chr5 71453284 71453355 -81083904 + (TC)n Simple_repeat Simple_repeat 2 72 0 6 1130 346 275 30 15 chr5 71455745 71455878 -81081381 - HAL1-2a_MD LINE L1 -548 2476 2342 6 1130 28 29 0 0 chr5 71456153 71456188 -81081071 + AT_rich Low_complexity Low_complexity 1 35 0 6 1130 300 256 13 0 chr5 71456896 71456974 -81080285 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1130 231 103 0 0 chr5 71456992 71457031 -81080228 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 6 1130 440 286 145 21 chr5 71457610 71457803 -81079456 + Lx8 LINE L1 6938 7154 -319 6 1130 919 288 152 19 chr5 71457804 71458172 -81079087 - MTD LTR MaLR 0 419 3 6 1130 5062 47 0 0 chr5 71458925 71459541 -81077718 + L1Md_T LINE L1 5965 6580 -2 6 1130 366 255 10 20 chr5 71459656 71459756 -81077503 + MTD-int LTR MaLR 1157 1255 -3 6 1130 889 282 26 19 chr5 71459766 71460030 -81077229 + MTD LTR MaLR 20 285 -134 6 1130 267 103 0 0 chr5 71460030 71460069 -81077190 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1130 25 75 0 0 chr5 71460592 71460645 -81076614 + AT_rich Low_complexity Low_complexity 1 53 0 6 1130 499 327 125 45 chr5 71461163 71461627 -81075632 - MLT1E LTR MaLR 0 653 153 6 1130 386 161 0 9 chr5 71465455 71465568 -81071691 + (TA)n Simple_repeat Simple_repeat 1 112 0 6 1130 243 349 0 0 chr5 71465663 71465726 -81071533 + AluG_3 SINE Alu 158 220 -91 6 1130 8297 71 0 2 chr5 71465856 71467625 -81069634 - L1Md_F2 LINE L1 -12 6570 4806 6 1130 515 346 48 5 chr5 71467739 71467945 -81069314 - ID_B1 SINE B4 -9 215 1 6 1130 463 309 9 0 chr5 71468641 71468751 -81068508 + Lx8 LINE L1 7164 7274 -199 6 1130 601 255 6 43 chr5 71468940 71469104 -81068155 + Lx9 LINE L1 7316 7473 -171 6 1130 405 0 0 0 chr5 71469236 71469281 -81067978 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 6 1130 375 299 129 38 chr5 71470428 71470503 -81066756 + B4 SINE B4 1 77 -215 6 1130 662 0 13 0 chr5 71470503 71470581 -81066678 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 1130 696 43 0 0 chr5 71470581 71470672 -81066587 + (GA)n Simple_repeat Simple_repeat 2 93 0 6 1130 375 299 129 38 chr5 71470672 71470727 -81066532 + B4 SINE B4 78 143 -149 6 1130 3489 81 17 50 chr5 71470767 71471286 -81065973 - L1_Mus2 LINE L1 0 6566 6065 6 1130 1502 141 129 2 chr5 71471286 71471635 -81065624 + Lx LINE L1 5660 6085 -497 6 1130 231 188 0 0 chr5 71471684 71471732 -81065527 + C-rich Low_complexity Low_complexity 2 49 0 6 1130 262 287 0 103 chr5 71471734 71471831 -81065428 + B4 SINE B4 206 292 0 6 1130 313 288 61 35 chr5 71472869 71472984 -81064275 - B1F SINE Alu -31 118 1 6 1130 255 228 18 0 chr5 71473328 71473385 -81063874 - Charlie12 DNA MER1_type -13 2860 2803 6 1130 27 0 0 0 chr5 71473649 71473676 -81063583 + AT_rich Low_complexity Low_complexity 1 27 0 6 1130 253 256 105 105 chr5 71476456 71476483 -81060776 + ID_B1 SINE B4 72 219 0 6 1130 314 319 149 16 chr5 71476483 71476604 -81060655 + B1_Mur1 SINE Alu 13 149 0 7 1130 27 73 0 0 chr5 71476950 71477005 -81060254 + AT_rich Low_complexity Low_complexity 1 55 0 7 1130 281 340 41 10 chr5 71477343 71477441 -81059818 - B1F SINE Alu -20 129 29 7 1130 267 378 117 15 chr5 71478996 71479192 -81058067 - L2 LINE L2 -391 3028 2813 7 1130 398 318 105 49 chr5 71479660 71479822 -81057437 + B3 SINE B2 6 176 -40 7 1130 471 295 45 15 chr5 71482158 71482292 -81054967 - ID_B1 SINE B4 -9 215 78 7 1130 378 0 0 0 chr5 71482943 71482985 -81054274 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1130 666 0 0 0 chr5 71486880 71486954 -81050305 + (GA)n Simple_repeat Simple_repeat 1 74 0 7 1130 240 35 0 0 chr5 71487081 71487110 -81050149 + (GGA)n Simple_repeat Simple_repeat 1 29 0 7 1130 432 0 0 0 chr5 71488399 71488447 -81048812 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1130 1482 295 81 25 chr5 71490083 71490674 -81046585 + Lx8 LINE L1 6844 7467 -6 7 1130 260 214 128 23 chr5 71491911 71491997 -81045262 - MIR SINE MIR -50 212 118 7 1130 225 0 0 0 chr5 71492021 71492046 -81045213 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1130 1272 65 0 0 chr5 71493346 71493515 -81043744 + L1Md_T LINE L1 6414 6582 0 7 1130 236 258 49 49 chr5 71493672 71493774 -81043485 - MLT1A1 LTR MaLR 0 408 307 7 1130 22 70 0 0 chr5 71495150 71495193 -81042066 + AT_rich Low_complexity Low_complexity 1 43 0 7 1130 234 184 0 0 chr5 71496273 71496322 -81040937 + A-rich Low_complexity Low_complexity 1 49 0 7 1130 214 99 27 40 chr5 71497965 71498009 -81039250 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 7 1130 1160 61 0 7 chr5 71498009 71498158 -81039101 - B1_Mus1 SINE Alu 0 148 1 7 1130 214 99 27 40 chr5 71498158 71498187 -81039072 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1130 3331 306 29 88 chr5 71498531 71499923 -81037336 - Lx5 LINE L1 -19 7031 5722 7 1130 180 0 0 0 chr5 71500068 71500088 -81037171 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1130 264 278 21 32 chr5 71500090 71500126 -81037133 + (TATG)n Simple_repeat Simple_repeat 1 34 0 2 1130 201 121 0 0 chr5 71500126 71500159 -81037100 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1130 264 278 21 32 chr5 71500159 71500215 -81037044 + (TATG)n Simple_repeat Simple_repeat 4 60 0 4 1130 252 357 48 48 chr5 71500253 71500418 -81036841 + MER58A DNA MER1_type 34 198 -26 5 1130 1407 78 0 0 chr5 71502783 71502963 -81034296 - L1_Mm LINE L1 -314 5569 5390 6 1130 426 307 90 13 chr5 71504007 71504162 -81033097 + B3 SINE B2 47 213 -3 7 1130 263 320 48 48 chr5 71504982 71505087 -81032172 - ORSL DNA Tip100 -170 105 1 8 1130 1199 61 0 0 chr5 71506169 71506316 -81030943 + B1_Mm SINE Alu 1 147 0 9 1130 268 163 0 0 chr5 71506318 71506367 -81030892 + A-rich Low_complexity Low_complexity 1 49 0 1 1130 895 358 51 58 chr5 71506422 71507048 -81030211 - MTE-int LTR MaLR -221 1359 738 1 1130 379 326 66 21 chr5 71507127 71507481 -81029778 - MTEb LTR MaLR 0 379 1 1 1130 627 352 75 30 chr5 71507783 71508359 -81028900 + L2 LINE L2 2046 2647 -772 1 1130 516 11 11 64 chr5 71508369 71508463 -81028796 + (CAAAAA)n Simple_repeat Simple_repeat 2 90 0 1 1130 5611 66 1 8 chr5 71508834 71509568 -81027691 - L1_Mus1 LINE L1 0 6567 5839 1 1130 3114 91 0 0 chr5 71509568 71509984 -81027275 + L1_Mus1 LINE L1 5458 5873 -10 1 1130 22 70 0 0 chr5 71510111 71510154 -81027105 + AT_rich Low_complexity Low_complexity 1 43 0 1 1130 2552 89 46 5 chr5 71510348 71510721 -81026538 - L1Md_F2 LINE L1 0 6582 6195 1 1130 283 317 57 9 chr5 71511569 71511674 -81025585 - PB1D10 SINE Alu -5 112 3 1 1130 298 302 23 0 chr5 71511589 71511675 -81025584 - ID_B1 SINE B4 -54 170 83 1 1130 419 302 37 73 chr5 71512649 71512867 -81024392 + L2a LINE L2 3217 3426 0 2 1130 657 263 39 17 chr5 71513810 71513981 -81023278 + MTEb LTR MaLR 5 179 -200 2 1130 298 240 128 19 chr5 71513981 71514125 -81023134 + B3A SINE B2 1 169 -47 2 1130 295 289 37 45 chr5 71514257 71514391 -81022868 + MTEb LTR MaLR 242 374 -5 2 1130 1238 270 110 21 chr5 71515505 71515990 -81021269 + Lx5 LINE L1 5823 6363 -687 2 1130 1061 264 115 25 chr5 71515987 71516482 -81020777 + Lx5 LINE L1 6479 7384 -76 2 1130 302 294 137 22 chr5 71516532 71516671 -81020588 + HAL1-3A_ME LINE L1 2284 2438 -420 2 1130 408 97 0 0 chr5 71516671 71516733 -81020526 + (GGGA)n Simple_repeat Simple_repeat 1 62 0 2 1130 363 23 0 0 chr5 71517235 71517279 -81019980 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1130 652 317 63 47 chr5 71517325 71517769 -81019490 - Lx9 LINE L1 -232 7412 6962 2 1130 963 226 50 18 chr5 71517775 71518107 -81019152 + MTC LTR MaLR 1 413 -8 2 1130 236 363 0 9 chr5 71518110 71518224 -81019035 - Lx8 LINE L1 -655 6818 6706 2 1130 296 230 106 0 chr5 71518376 71518489 -81018770 - L1MA9 LINE L1 -83 6229 6105 3 1130 351 105 0 0 chr5 71518524 71518581 -81018678 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1130 204 40 0 0 chr5 71518592 71518617 -81018642 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 3 1130 258 307 130 30 chr5 71518618 71518749 -81018510 + MLT1L LTR MaLR 171 314 -296 3 1130 246 318 54 102 chr5 71518825 71518972 -81018287 + MLT1L LTR MaLR 424 563 -47 3 1130 8200 62 1 2 chr5 71520182 71521929 -81015330 - L1Md_F2 LINE L1 -4 6578 4834 3 1130 597 292 46 58 chr5 71521923 71522338 -81014921 - L1MA9 LINE L1 -327 5985 5576 3 1130 1914 181 66 8 chr5 71522339 71522717 -81014542 + MTC LTR MaLR 1 400 -21 3 1130 305 231 6 138 chr5 71522824 71523005 -81014254 - L1MA9 LINE L1 -841 5450 5294 3 1130 378 0 0 0 chr5 71525688 71525730 -81011529 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1130 244 361 0 27 chr5 71525865 71525939 -81011320 - B4 SINE B4 0 292 221 3 1130 755 58 0 0 chr5 71525943 71526120 -81011139 + L1_Mus1 LINE L1 6456 6567 0 3 1130 656 24 12 0 chr5 71526244 71526326 -81010933 + (GAAA)n Simple_repeat Simple_repeat 1 83 0 3 1130 776 291 25 10 chr5 71526328 71526529 -81010730 - B4 SINE B4 -87 205 2 3 1130 290 298 134 24 chr5 71527175 71527429 -81009830 - Lx9 LINE L1 -15 7629 7348 4 1130 471 348 6 0 chr5 71527433 71527594 -81009665 + RSINE1 SINE B4 2 163 -2 4 1130 1641 260 31 31 chr5 71528805 71529360 -81007899 + Lx9 LINE L1 5013 5567 -280 4 1130 1777 64 32 0 chr5 71529475 71529724 -81007535 - L1_Mus4 LINE L1 -661 5975 5719 4 1130 4614 97 6 5 chr5 71529725 71530378 -81006881 + L1_Mus4 LINE L1 5980 6633 -3 4 1130 886 220 105 8 chr5 71530572 71530823 -81006436 + Lx9 LINE L1 5571 5872 -11 4 1130 440 269 23 8 chr5 71531365 71531494 -81005765 + Lx9 LINE L1 5846 5977 -1667 4 1130 438 269 15 75 chr5 71531593 71531714 -81005545 - RMER17C LTR ERVK -221 189 77 4 1130 664 61 10 10 chr5 71531714 71531813 -81005446 + (GA)n Simple_repeat Simple_repeat 1 99 0 4 1130 438 267 16 23 chr5 71531813 71531899 -81005360 - RMER17C LTR ERVK -334 76 2 4 1130 312 27 0 0 chr5 71532089 71532126 -81005133 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1130 753 96 0 0 chr5 71532126 71532250 -81005009 + (GA)n Simple_repeat Simple_repeat 1 125 0 4 1130 1037 307 49 11 chr5 71532261 71532492 -81004767 + Lx9 LINE L1 6363 6600 -1044 4 1130 216 0 0 0 chr5 71532492 71532516 -81004743 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1130 1037 307 49 11 chr5 71532516 71532633 -81004626 + Lx9 LINE L1 6601 6723 -921 4 1130 8364 96 43 6 chr5 71532652 71533904 -81003355 + Lx3_Mus LINE L1 5706 7004 -5 4 1130 1113 254 22 34 chr5 71533896 71534218 -81003041 + Lx9 LINE L1 6772 7089 -555 4 1130 13120 146 56 6 chr5 71534254 71537695 -80999564 - Lx4A LINE L1 0 7058 3425 5 1130 1597 262 28 54 chr5 71537693 71538234 -80999025 + Lx9 LINE L1 7079 7605 -39 4 1130 36 40 0 0 chr5 71538258 71538308 -80998951 + AT_rich Low_complexity Low_complexity 1 50 0 5 1130 26 30 0 0 chr5 71539594 71539627 -80997632 + AT_rich Low_complexity Low_complexity 1 33 0 5 1130 21 0 0 0 chr5 71539644 71539665 -80997594 + AT_rich Low_complexity Low_complexity 1 21 0 5 1130 28 86 0 0 chr5 71539759 71539829 -80997430 + AT_rich Low_complexity Low_complexity 1 70 0 5 1130 549 68 0 0 chr5 71539913 71539986 -80997273 - B1_Mur4 SINE Alu -1 149 77 5 1130 270 254 45 0 chr5 71540265 71540332 -80996927 + Lx8 LINE L1 6727 6796 -677 5 1130 966 308 95 85 chr5 71540341 71540880 -80996379 - RMER15 LTR ERVL -5 570 27 5 1130 238 222 19 0 chr5 71540904 71540958 -80996301 - RMER15 LTR ERVL -515 60 6 5 1130 432 320 14 77 chr5 71540967 71541187 -80996072 + Lx8 LINE L1 6801 7006 -467 5 1130 305 305 71 57 chr5 71541248 71541460 -80995799 + Lx8 LINE L1 7248 7462 -11 5 1130 28 61 0 0 chr5 71541467 71541516 -80995743 + AT_rich Low_complexity Low_complexity 1 49 0 5 1130 705 30 30 0 chr5 71541909 71542009 -80995250 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 5 1130 221 250 18 0 chr5 71542027 71542083 -80995176 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 6 1130 34 65 0 0 chr5 71542586 71542648 -80994611 + AT_rich Low_complexity Low_complexity 1 62 0 6 1130 26 50 0 0 chr5 71542742 71542782 -80994477 + AT_rich Low_complexity Low_complexity 1 40 0 6 1130 470 237 35 24 chr5 71542980 71543157 -80994102 + L1MA9 LINE L1 6054 6238 -74 6 1130 339 203 0 0 chr5 71543157 71543231 -80994028 + (TA)n Simple_repeat Simple_repeat 2 75 0 6 1130 469 326 29 0 chr5 71543322 71543460 -80993799 + B4A SINE B4 133 274 -18 6 1130 1839 148 38 9 chr5 71543859 71544179 -80993080 + ORR1A4 LTR MaLR 1 329 0 6 1130 3641 38 9 7 chr5 71545066 71545514 -80991745 + L1Md_F3 LINE L1 6136 6584 0 6 1130 3888 151 62 6 chr5 71545623 71546316 -80990943 - Lx2B LINE L1 0 7000 6269 6 1130 272 29 0 0 chr5 71546316 71546351 -80990908 + Lx2B LINE L1 6246 6280 -720 6 1130 372 43 0 0 chr5 71546938 71546984 -80990275 + (TA)n Simple_repeat Simple_repeat 1 46 0 7 1130 21 0 0 0 chr5 71547026 71547047 -80990212 + AT_rich Low_complexity Low_complexity 1 21 0 7 1130 2313 249 39 40 chr5 71548097 71548793 -80988466 + L1_Mur3 LINE L1 39 733 -6979 7 1130 3271 137 23 28 chr5 71549492 71550056 -80987203 + Lx LINE L1 6089 6649 -5 7 1130 607 118 0 134 chr5 71550077 71550204 -80987055 + ORR1A2 LTR MaLR 1 110 -219 7 1130 1333 137 41 3 chr5 71550499 71550754 -80986505 + ORR1A2 LTR MaLR 110 394 0 7 1130 218 379 74 21 chr5 71550802 71551128 -80986131 - L2a LINE L2 -134 3292 2950 7 1130 268 319 57 51 chr5 71551432 71551607 -80985652 - MER58B DNA MER1_type -45 296 121 7 1130 289 256 13 0 chr5 71552104 71552182 -80985077 + ID4_ SINE ID 3 81 -2 7 1130 21 0 0 0 chr5 71552480 71552501 -80984758 + AT_rich Low_complexity Low_complexity 1 21 0 7 1130 226 296 12 36 chr5 71552925 71553009 -80984250 + MLT1D LTR MaLR 25 106 -399 7 1130 475 306 13 58 chr5 71553096 71553252 -80984007 + B1F SINE Alu 1 149 0 8 1130 407 335 44 29 chr5 71553294 71553500 -80983759 + MLT1D LTR MaLR 294 502 -3 7 1130 279 339 36 38 chr5 71554165 71554318 -80982941 + MIRb SINE MIR 75 237 -31 8 1130 944 269 17 55 chr5 71554410 71554701 -80982558 + Lx6 LINE L1 7153 7432 -28 8 1130 23 0 0 0 chr5 71554824 71554847 -80982412 + AT_rich Low_complexity Low_complexity 1 23 0 8 1130 278 291 100 0 chr5 71554912 71555022 -80982237 + MIR SINE MIR 121 241 -21 8 1130 384 22 0 0 chr5 71555925 71555970 -80981289 + (TTA)n Simple_repeat Simple_repeat 3 47 0 8 1130 234 81 0 0 chr5 71557432 71557469 -80979790 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 8 1130 3375 105 64 8 chr5 71558152 71558671 -80978588 + L1_Mus4 LINE L1 6089 6636 0 8 1130 769 184 59 6 chr5 71558735 71558904 -80978355 + Lx4A LINE L1 6880 7057 -1 8 1130 8002 124 16 40 chr5 71559069 71561029 -80976230 - Lx3B LINE L1 -40 6933 5021 8 1130 585 42 0 0 chr5 71562094 71562166 -80975093 + (TG)n Simple_repeat Simple_repeat 2 73 0 9 1130 411 21 0 0 chr5 71562166 71562213 -80975046 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 9 1130 614 207 80 7 chr5 71562222 71562373 -80974886 - Lx4B LINE L1 -31 7027 6866 9 1130 668 203 108 14 chr5 71562472 71562788 -80974471 - Lx9 LINE L1 -1 7643 7247 9 1130 288 111 0 0 chr5 71562803 71562848 -80974411 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 9 1130 251 208 175 124 chr5 71562848 71562985 -80974274 - B1F2 SINE Alu 0 149 6 9 1130 262 312 154 96 chr5 71562997 71563309 -80973950 + MER31A LTR ERV1 156 485 0 9 1130 1247 180 123 36 chr5 71563996 71564417 -80972842 + RMER17C LTR ERVK 19 453 -505 9 1130 1045 158 14 38 chr5 71564686 71564897 -80972362 - URR1B DNA MER1_type -2 223 18 9 1131 21 0 0 0 chr5 71565722 71565743 -80971516 + AT_rich Low_complexity Low_complexity 1 21 0 9 1131 622 286 74 35 chr5 71565906 71566109 -80971150 - ORR1D1 LTR MaLR 0 384 174 1 1131 384 104 0 0 chr5 71566112 71566179 -80971080 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1131 776 242 22 0 chr5 71566179 71566357 -80970902 - ORR1D1 LTR MaLR -192 182 1 1 1131 926 138 6 0 chr5 71566566 71566726 -80970533 + (TTCC)n Simple_repeat Simple_repeat 4 164 0 1 1131 920 57 0 8 chr5 71567043 71567167 -80970092 + (TTC)n Simple_repeat Simple_repeat 3 125 0 1 1131 1712 188 26 59 chr5 71567590 71567930 -80969329 + ORR1A4 LTR MaLR 1 329 0 1 1131 443 342 93 34 chr5 71568566 71568802 -80968457 - MIR SINE MIR 0 262 13 1 1131 611 248 36 0 chr5 71570337 71570474 -80966785 + B1_Mur3 SINE Alu 1 142 -7 1 1131 630 113 0 0 chr5 71570495 71570592 -80966667 + (CA)n Simple_repeat Simple_repeat 2 98 0 1 1131 2142 137 6 4 chr5 71571256 71571598 -80965661 - L1_Mus4 LINE L1 -433 6203 5887 1 1131 22 0 0 0 chr5 71571663 71571685 -80965574 + AT_rich Low_complexity Low_complexity 1 22 0 1 1131 807 306 91 65 chr5 71572222 71572620 -80964639 + MT2A LTR ERVL 41 448 -85 1 1131 37837 31 0 0 chr5 71575064 71581440 -80955819 - L1Md_T LINE L1 0 6585 112 1 1131 1094 83 0 7 chr5 71581922 71581933 -80955326 - B1_Mm SINE Alu 0 147 137 1 1131 282 29 0 0 chr5 71581933 71581968 -80955291 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1131 1094 83 0 7 chr5 71581968 71582102 -80955157 - B1_Mm SINE Alu -11 136 3 1 1131 210 37 0 0 chr5 71582963 71582990 -80954269 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1131 201 82 40 20 chr5 71583689 71583739 -80953520 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1 1131 1738 237 17 32 chr5 71583767 71584177 -80953082 + MTD LTR MaLR 3 406 -13 1 1131 1159 266 119 63 chr5 71584186 71584831 -80952428 + MTC-int LTR MaLR 259 1325 -467 1 1131 983 211 83 4 chr5 71584848 71585076 -80952183 - Lx3C LINE L1 -4 6972 6727 1 1131 324 48 0 0 chr5 71585076 71585118 -80952141 + RLTR10B2 LTR ERVK 1 42 -250 1 1131 2001 88 84 39 chr5 71585140 71585473 -80951786 + RLTR10B2 LTR ERVK 18 365 0 1 1131 2107 128 14 20 chr5 71585473 71585817 -80951442 - Lx3C LINE L1 -244 6732 6391 1 1131 1952 120 86 0 chr5 71585915 71586216 -80951043 + Lx3A LINE L1 6645 6971 -10 1 1131 282 310 62 14 chr5 71586257 71586401 -80950858 + MTD-int LTR MaLR 1108 1258 0 1 1131 869 249 162 14 chr5 71586401 71586670 -80950589 + MTD LTR MaLR 14 323 -96 1 1131 185 300 0 0 chr5 71587224 71587264 -80949995 - L2 LINE L2 -2907 512 473 1 1131 7055 107 103 64 chr5 71587618 71588933 -80948326 - Lx3A LINE L1 -5 6976 5610 1 1131 319 70 70 0 chr5 71589090 71589147 -80948112 + (CATAT)n Simple_repeat Simple_repeat 3 63 0 1 1131 626 298 36 91 chr5 71589158 71589465 -80947794 + RLTR12B LTR ERVK 12 301 -227 1 1131 243 165 31 52 chr5 71589760 71589856 -80947403 + T-rich Low_complexity Low_complexity 2 95 0 1 1131 287 352 28 14 chr5 71590492 71590636 -80946623 + B4A SINE B4 2 147 -145 1 1131 1335 87 5 5 chr5 71591395 71591581 -80945678 - B2_Mm2 SINE B2 -9 186 1 1 1131 509 175 22 7 chr5 71591774 71591912 -80945347 + (TA)n Simple_repeat Simple_repeat 1 140 0 1 1131 22 0 0 0 chr5 71592474 71592496 -80944763 + AT_rich Low_complexity Low_complexity 1 22 0 1 1131 297 404 48 15 chr5 71592565 71592771 -80944488 + MIRb SINE MIR 41 253 -15 1 1131 208 137 39 0 chr5 71593968 71594019 -80943240 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1131 629 290 39 54 chr5 71594069 71594210 -80943049 - MLT1B LTR MaLR -153 237 104 1 1131 1843 162 74 69 chr5 71594210 71594602 -80942657 + ORR1B1 LTR MaLR 1 394 0 1 1131 629 290 39 54 chr5 71594602 71594664 -80942595 - MLT1B LTR MaLR -287 103 37 1 1131 1266 236 101 18 chr5 71595459 71595787 -80941472 - ORR1D1 LTR MaLR -15 359 5 1 1131 4794 134 3 16 chr5 71596052 71596819 -80940440 - Lx2B LINE L1 0 7000 6244 1 1131 16747 173 38 39 chr5 71596823 71601040 -80936219 - L1_Mus3 LINE L1 -1 6637 2434 1 1131 2857 157 9 6 chr5 71601036 71601844 -80935415 - MusHAL1 LINE L1 -2361 1254 444 1 1131 252 0 0 0 chr5 71602165 71602193 -80935066 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1131 434 18 18 0 chr5 71602193 71602247 -80935012 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1131 189 175 0 0 chr5 71602260 71602300 -80934959 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1131 329 374 5 37 chr5 71602307 71602496 -80934763 - B3A SINE B2 -15 183 1 1 1131 653 73 10 0 chr5 71602698 71602794 -80934465 + (CA)n Simple_repeat Simple_repeat 2 98 0 1 1131 494 312 51 17 chr5 71602794 71603029 -80934230 - Lx7 LINE L1 -329 7367 7125 1 1131 1100 293 44 12 chr5 71603142 71603480 -80933779 - MTE2a LTR MaLR -30 349 1 1 1131 410 0 0 20 chr5 71603622 71603673 -80933586 + (TAAAA)n Simple_repeat Simple_repeat 3 52 0 1 1131 289 317 32 48 chr5 71604213 71604339 -80932920 - L2a LINE L2 -40 3386 3263 1 1131 196 104 0 59 chr5 71604449 71604500 -80932759 + T-rich Low_complexity Low_complexity 2 49 0 1 1131 227 309 0 42 chr5 71604508 71604579 -80932680 - PB1D10 SINE Alu -49 68 1 1 1131 3503 77 11 0 chr5 71605098 71605555 -80931704 - L1_Mus1 LINE L1 0 6567 6106 1 1131 407 239 88 0 chr5 71605898 71606011 -80931248 + MLT1E1A LTR MaLR 556 678 -2 1 1131 243 0 0 0 chr5 71606412 71606439 -80930820 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1131 423 0 0 0 chr5 71606439 71606485 -80930774 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1131 414 57 0 0 chr5 71607121 71607174 -80930085 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1 1131 220 250 17 0 chr5 71607933 71607993 -80929266 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1131 2845 182 27 8 chr5 71608000 71608526 -80928733 + RMER20B LTR ERVK 1 536 -91 1 1131 906 316 86 28 chr5 71608582 71609235 -80928024 - L1MEc LINE L1 -5674 726 36 1 1131 438 20 0 0 chr5 71609468 71609519 -80927740 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1131 1793 152 31 28 chr5 71609818 71610176 -80927083 + RLTR15 LTR ERVK 1 359 0 1 1131 468 303 73 120 chr5 71611000 71611274 -80925985 - RMER15 LTR ERVL -14 561 301 1 1131 6520 42 6 0 chr5 71611287 71612082 -80925177 - L1Md_F2 LINE L1 -6 6576 5777 1 1131 1185 41 0 0 chr5 71612460 71612607 -80924652 + B1_Mus2 SINE Alu 1 147 0 1 1131 213 65 0 0 chr5 71612607 71612638 -80924621 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1131 22 0 0 0 chr5 71613311 71613333 -80923926 + AT_rich Low_complexity Low_complexity 1 22 0 1 1131 522 371 105 45 chr5 71613572 71614021 -80923238 + MLT1D LTR MaLR 5 480 -25 1 1131 2563 159 24 17 chr5 71614525 71614992 -80922267 + Lx4A LINE L1 6589 7058 0 1 1131 1093 152 110 13 chr5 71615391 71615618 -80921641 + Lx2 LINE L1 6749 6997 0 1 1131 560 14 14 0 chr5 71615732 71615801 -80921458 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1131 525 282 64 46 chr5 71615817 71616036 -80921223 + RMER5 LTR ERV1 112 334 -200 1 1131 239 282 179 0 chr5 71616534 71616612 -80920647 + RSINE1 SINE B4 1 92 -73 1 1131 288 315 11 21 chr5 71616818 71616912 -80920347 + MLT1C LTR MaLR 3 95 -372 1 1131 2381 224 24 37 chr5 71617130 71617672 -80919587 + Lx5 LINE L1 6474 7008 -42 1 1131 828 236 49 25 chr5 71618022 71618076 -80919183 + Lx6 LINE L1 6686 6737 -723 1 1131 366 23 0 0 chr5 71618076 71618119 -80919140 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1 1131 1192 281 48 19 chr5 71618119 71618737 -80918522 + Lx6 LINE L1 6457 7444 -16 1 1131 234 150 0 0 chr5 71618791 71618831 -80918428 + (TGG)n Simple_repeat Simple_repeat 1 40 0 1 1131 515 331 0 0 chr5 71621158 71621300 -80915959 - RSINE1 SINE B4 -18 147 6 1 1131 24 0 0 0 chr5 71621509 71621533 -80915726 + AT_rich Low_complexity Low_complexity 1 24 0 1 1131 185 122 49 0 chr5 71621533 71621574 -80915685 + A-rich Low_complexity Low_complexity 3 45 0 1 1131 1092 83 14 0 chr5 71622634 71622779 -80914480 + B1_Mus1 SINE Alu 2 148 0 1 1131 404 165 11 0 chr5 71623055 71623146 -80914113 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1131 276 77 0 0 chr5 71623220 71623259 -80914000 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1131 22 0 0 0 chr5 71624747 71624769 -80912490 + AT_rich Low_complexity Low_complexity 1 22 0 1 1131 222 323 15 30 chr5 71624895 71624962 -80912297 - ID4 SINE ID -16 67 2 1 1131 355 311 112 15 chr5 71625290 71625424 -80911835 - B3A SINE B2 -46 152 6 1 1131 225 254 0 0 chr5 71625944 71625999 -80911260 + (TAGG)n Simple_repeat Simple_repeat 1 55 0 1 1131 372 295 130 8 chr5 71626012 71626135 -80911124 - RSINE1 SINE B4 -17 148 11 1 1131 1806 86 27 4 chr5 71626630 71626888 -80910371 - Lx3A LINE L1 -1 6980 6717 1 1131 231 114 0 0 chr5 71627681 71627716 -80909543 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 1131 341 380 37 9 chr5 71629711 71629929 -80907330 + MIR SINE MIR 39 262 0 1 1131 190 358 41 31 chr5 71630200 71630298 -80906961 - L2 LINE L2 -1982 1437 1339 1 1131 492 143 0 0 chr5 71631058 71631142 -80906117 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 1131 7592 96 6 3 chr5 71631658 71632737 -80904522 - L1_Mus3 LINE L1 0 6638 5586 1 1131 2444 138 80 13 chr5 71632736 71633199 -80904060 - L1_Mur2 LINE L1 -1743 4134 3641 1 1131 2134 232 50 29 chr5 71634544 71635090 -80902169 + Lx7 LINE L1 6807 7363 -333 1 1131 32 43 0 0 chr5 71635090 71635136 -80902123 + AT_rich Low_complexity Low_complexity 1 46 0 1 1131 423 217 48 24 chr5 71635138 71635303 -80901956 + Lx7 LINE L1 7354 7522 -174 1 1131 231 352 64 53 chr5 71635758 71635929 -80901330 - MLT1K LTR MaLR -19 576 404 1 1131 44 46 0 0 chr5 71637387 71637452 -80899807 + AT_rich Low_complexity Low_complexity 1 65 0 1 1131 271 243 15 0 chr5 71638271 71638407 -80898852 + (CA)n Simple_repeat Simple_repeat 1 138 0 1 1131 185 65 0 31 chr5 71638594 71638626 -80898633 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1131 21 57 0 0 chr5 71640427 71640462 -80896797 + AT_rich Low_complexity Low_complexity 1 35 0 2 1131 34 0 0 0 chr5 71641266 71641300 -80895959 + AT_rich Low_complexity Low_complexity 1 34 0 2 1131 324 0 0 0 chr5 71641861 71641897 -80895362 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1131 342 278 32 74 chr5 71641964 71642154 -80895105 + L1_Mur3 LINE L1 5106 5287 -593 2 1131 7602 64 2 1 chr5 71642188 71643528 -80893731 - L1Md_F2 LINE L1 -12 6570 5229 2 1131 329 84 0 0 chr5 71643564 71643613 -80893646 - L1_Mm LINE L1 -1040 4837 4789 2 1131 3049 82 5 7 chr5 71643648 71644067 -80893192 - L1_Mus2 LINE L1 -2 6564 6147 2 1131 993 294 96 27 chr5 71644068 71644578 -80892681 + L1_Rod LINE L1 5332 5847 0 2 1131 38375 6 1 0 chr5 71645106 71650685 -80886574 + L1Md_A LINE L1 6 5586 -297 2 1131 8994 4 0 0 chr5 71650685 71651681 -80885578 + L1Md_A LINE L1 5587 6582 0 2 1131 338 350 68 42 chr5 71651798 71651952 -80885307 + HAL1 LINE L1 650 810 -1697 2 1131 1221 99 61 0 chr5 71651952 71652133 -80885126 - B2_Mm2 SINE B2 -3 192 1 2 1131 338 350 68 42 chr5 71652133 71652214 -80885045 + HAL1 LINE L1 811 891 -1616 2 1131 543 283 0 0 chr5 71652303 71652423 -80884836 + RSINE1 SINE B4 3 122 -43 2 1131 21 0 0 0 chr5 71652679 71652700 -80884559 + AT_rich Low_complexity Low_complexity 1 21 0 2 1131 225 0 0 0 chr5 71653684 71653709 -80883550 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 1131 1892 220 128 23 chr5 71654967 71655538 -80881721 - Lx9 LINE L1 0 7644 7014 2 1131 586 288 54 44 chr5 71655842 71656174 -80881085 - L1MA4 LINE L1 -361 5939 5534 2 1131 27 0 0 0 chr5 71656507 71656534 -80880725 + AT_rich Low_complexity Low_complexity 1 27 0 2 1131 2107 323 74 34 chr5 71656650 71657631 -80879628 - Lx8 LINE L1 -155 7318 6298 2 1131 503 239 84 74 chr5 71657640 71657830 -80879429 + Lx7 LINE L1 5715 5906 -1790 2 1131 32221 83 13 7 chr5 71658028 71663151 -80874108 + L1Md_F2 LINE L1 446 5585 -298 2 1131 7507 67 9 0 chr5 71663152 71664127 -80873132 + L1Md_F2 LINE L1 5587 6570 -12 2 1131 9008 107 35 2 chr5 71664353 71665827 -80871432 - Lx3_Mus LINE L1 -2 7007 5479 2 1131 686 190 91 70 chr5 71665842 71666085 -80871174 - Lx9 LINE L1 -92 7552 7305 2 1131 712 339 57 80 chr5 71666118 71666178 -80871081 - MT2A LTR ERVL 0 533 471 2 1131 387 0 0 0 chr5 71666178 71666221 -80871038 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 1131 712 339 57 80 chr5 71666221 71666575 -80870684 - MT2A LTR ERVL -63 470 109 2 1131 948 152 23 0 chr5 71666575 71666752 -80870507 - L1_Mus3 LINE L1 0 6638 6458 2 1131 712 339 57 80 chr5 71666752 71666877 -80870382 - MT2A LTR ERVL -425 108 6 2 1131 362 275 72 26 chr5 71666882 71667035 -80870224 - ERVL-B4-int LTR ERVL 0 5667 5508 2 1131 1096 279 54 81 chr5 71667215 71667442 -80869817 - ERVL-B4-int LTR ERVL -273 5488 5281 2 1131 5762 90 14 4 chr5 71667442 71668245 -80869014 - L1_Mus3 LINE L1 -1 6637 5827 2 1131 1118 129 6 11 chr5 71668245 71668425 -80868834 - B2_Mm2 SINE B2 -16 179 1 2 1131 1096 276 52 101 chr5 71668425 71668779 -80868480 - ERVL-B4-int LTR ERVL -457 5304 4981 2 1131 239 117 0 48 chr5 71668779 71668842 -80868417 + A-rich Low_complexity Low_complexity 1 60 0 2 1131 1098 277 52 16 chr5 71668844 71669152 -80868107 - ERVL-B4-int LTR ERVL -844 4870 4552 2 1131 1630 160 3 14 chr5 71669153 71669444 -80867815 - RMER6A LTR ERVK 0 756 469 2 1131 502 87 12 12 chr5 71669444 71669526 -80867733 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 2 1131 1320 247 62 33 chr5 71669529 71670010 -80867249 - RMER6A LTR ERVK -254 502 8 2 1131 515 313 39 29 chr5 71670025 71670232 -80867027 - MTEa LTR MaLR 0 379 171 2 1131 6299 102 43 2 chr5 71670232 71671462 -80865797 - Lx LINE L1 -344 6310 4999 2 1131 3698 104 40 2 chr5 71671464 71672014 -80865245 + L1_Mus3 LINE L1 6068 6638 0 2 1131 319 358 40 20 chr5 71672017 71672168 -80865091 - MTEa LTR MaLR -186 193 40 2 1131 707 259 158 53 chr5 71672251 71672835 -80864424 + L1M2 LINE L1 3054 3698 -2445 2 1131 1407 165 7 66 chr5 71672911 71673216 -80864043 - Lx3A LINE L1 -3 6978 6692 2 1131 573 347 73 16 chr5 71674145 71674391 -80862868 - MLT1A0 LTR MaLR -105 260 1 2 1131 300 0 0 0 chr5 71675372 71675416 -80861843 - L1Md_T LINE L1 0 6582 6539 2 1131 342 264 55 0 chr5 71676344 71676454 -80860805 - MER94 DNA AcHobo 0 134 19 2 1131 253 324 211 20 chr5 71676756 71677012 -80860247 - MLT2B1 LTR ERVL -78 442 123 2 1131 496 167 24 0 chr5 71677029 71677113 -80860146 - Lx3_Mus LINE L1 -624 6385 6300 2 1131 1918 134 10 3 chr5 71677106 71677406 -80859853 + Lx3A LINE L1 6494 6795 -186 2 1131 1234 222 70 4 chr5 71677406 71677677 -80859582 - MTC LTR MaLR -52 369 81 2 1131 1540 239 137 30 chr5 71677679 71678145 -80859114 - RMER20A LTR ERVK 0 516 1 2 1131 513 134 12 0 chr5 71678148 71678230 -80859029 - MTC LTR MaLR -338 83 1 2 1131 319 250 109 46 chr5 71678247 71678428 -80858831 + MTE-int LTR MaLR 1209 1546 -34 2 1131 204 307 76 29 chr5 71679702 71679852 -80857407 - MIRb SINE MIR -46 216 66 2 1131 405 0 0 0 chr5 71680079 71680124 -80857135 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1131 257 312 0 30 chr5 71680130 71680196 -80857063 - B4A SINE B4 -4 288 225 2 1131 386 109 0 0 chr5 71680200 71680255 -80857004 + Lx3_Mus LINE L1 6484 6538 -471 2 1131 2406 50 0 3 chr5 71680253 71680553 -80856706 - L1_Mus1 LINE L1 -629 5938 5640 2 1131 4697 88 0 3 chr5 71680553 71681190 -80856069 + L1_Mus1 LINE L1 5932 6566 -1 2 1131 3001 129 13 2 chr5 71681211 71681670 -80855589 + Lx3_Mus LINE L1 6527 6990 -19 2 1131 321 343 9 9 chr5 71681748 71681854 -80855405 - B4 SINE B4 -87 205 100 2 1131 601 102 9 9 chr5 71682529 71682638 -80854621 + (TC)n Simple_repeat Simple_repeat 2 110 0 2 1131 272 322 0 62 chr5 71683586 71683682 -80853577 - RSINE1 SINE B4 -74 91 2 2 1131 241 320 152 51 chr5 71683858 71684194 -80853065 - L1MEc LINE L1 -5943 457 88 2 1131 1376 329 45 22 chr5 71684320 71684899 -80852360 - Lx8 LINE L1 -153 7320 6729 2 1131 547 295 27 107 chr5 71685324 71685548 -80851711 - MER20 DNA MER1_type -1 218 13 2 1131 2691 45 0 3 chr5 71687220 71687582 -80849677 - L1Md_F3 LINE L1 0 6584 6230 2 1131 7726 34 2 0 chr5 71687578 71688495 -80848764 - L1Md_F2 LINE L1 -21 6561 5643 2 1131 5652 57 27 8 chr5 71688907 71689656 -80847603 - Lx3_Mus LINE L1 0 7009 6247 2 1131 348 24 0 0 chr5 71689903 71689944 -80847315 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1131 1251 50 6 0 chr5 71690622 71690781 -80846478 - L1_Mus1 LINE L1 0 6567 6408 2 1131 210 336 27 161 chr5 71691743 71691892 -80845367 + RSINE1 SINE B4 16 144 -21 2 1131 1172 306 63 28 chr5 71691933 71692474 -80844785 + Lx8 LINE L1 6069 6628 -845 2 1131 1054 123 0 16 chr5 71692623 71692805 -80844454 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 2 1131 959 219 72 125 chr5 71692821 71693252 -80844007 - MT2A LTR ERVL -57 544 1 2 1131 1394 320 97 29 chr5 71693252 71693900 -80843359 + Lx8 LINE L1 6623 7314 -159 2 1131 617 276 19 26 chr5 71695864 71696020 -80841239 + B3A SINE B2 3 157 -41 2 1131 503 125 169 99 chr5 71696189 71696331 -80840928 - Lx7 LINE L1 -187 7509 7358 2 141 1725 83 8 8 chr5 71696380 71696634 -80840625 - MT-int LTR MaLR -468 630 377 2 1132 5670 46 47 11 chr5 71696649 71697379 -80839880 - L1Md_F2 LINE L1 0 6582 5827 2 1132 6885 61 8 1 chr5 71697379 71698294 -80838965 - MTA_Mm-int LTR MaLR -176 922 2 2 1132 2968 52 15 25 chr5 71698297 71698694 -80838565 - MTA_Mm LTR MaLR -2 394 2 2 1132 1059 103 0 0 chr5 71698694 71698849 -80838410 + (GGAA)n Simple_repeat Simple_repeat 4 158 0 2 1132 1037 226 30 49 chr5 71698857 71699122 -80838137 - Lx7 LINE L1 -352 7344 7085 2 1132 531 0 0 0 chr5 71699329 71699388 -80837871 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 2 1132 256 219 12 12 chr5 71699432 71699515 -80837744 + CT-rich Low_complexity Low_complexity 6 88 0 2 1132 641 342 34 30 chr5 71699518 71699780 -80837479 - B4A SINE B4 -28 264 2 2 1132 223 323 54 33 chr5 71699966 71700064 -80837195 - MIRm SINE MIR -150 118 20 2 1132 2576 104 2 30 chr5 71700741 71701147 -80836112 + RLTR44B LTR ERVK 55 449 0 2 1132 28 0 0 0 chr5 71703228 71703256 -80834003 + AT_rich Low_complexity Low_complexity 1 28 0 2 1132 247 206 32 0 chr5 71703323 71703386 -80833873 - L1MA6 LINE L1 -116 6184 6120 2 1132 486 302 230 75 chr5 71703995 71704578 -80832681 + Charlie10 DNA MER1_type 362 1034 -1788 2 1132 37999 42 1 3 chr5 71704625 71710896 -80826363 - L1Md_T LINE L1 0 6585 271 2 1132 406 351 115 13 chr5 71710954 71711188 -80826071 + Charlie10 DNA MER1_type 1277 1534 -1288 2 1132 252 0 0 0 chr5 71711188 71711216 -80826043 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1132 459 0 0 0 chr5 71711216 71711266 -80825993 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1132 469 236 50 99 chr5 71711269 71711410 -80825849 - B4A SINE B4 0 292 159 2 1132 265 317 89 68 chr5 71711558 71711927 -80825332 + Charlie10 DNA MER1_type 1695 2071 -751 2 1132 275 187 198 0 chr5 71711999 71712090 -80825169 + Charlie10 DNA MER1_type 2212 2320 -502 2 1132 258 283 54 54 chr5 71712424 71712536 -80824723 + MER73 LTR ERVL 14 125 -519 2 1132 575 314 0 91 chr5 71712545 71712720 -80824539 + ORR1D2 LTR MaLR 7 165 -194 2 1132 1655 193 67 42 chr5 71712720 71713077 -80824182 + Lx4B LINE L1 6693 7058 0 2 1132 608 254 92 48 chr5 71713109 71713316 -80823943 + ORR1D2 LTR MaLR 155 370 0 2 1132 350 311 85 13 chr5 71713920 71714073 -80823186 - HERVL74-int LTR ERVL -2035 3650 3487 2 1132 43 56 0 0 chr5 71715366 71715437 -80821822 + AT_rich Low_complexity Low_complexity 1 71 0 2 1132 275 258 0 43 chr5 71715714 71715807 -80821452 - MLT1A1 LTR MaLR 0 408 320 2 1132 3866 194 25 32 chr5 71716252 71717037 -80820222 + Lx4B LINE L1 6260 7039 -19 2 1132 273 57 0 0 chr5 71717037 71717072 -80820187 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 1132 372 103 0 0 chr5 71717074 71717132 -80820127 + (CATA)n Simple_repeat Simple_repeat 2 59 0 2 1132 27 29 0 0 chr5 71717812 71717846 -80819413 + AT_rich Low_complexity Low_complexity 1 34 0 2 1132 29 0 0 0 chr5 71718607 71718636 -80818623 + AT_rich Low_complexity Low_complexity 1 29 0 2 1132 23 0 0 0 chr5 71718692 71718715 -80818544 + AT_rich Low_complexity Low_complexity 1 23 0 2 1132 1594 132 23 0 chr5 71718760 71719018 -80818241 - Lx LINE L1 -205 6449 6186 2 1132 1395 131 0 0 chr5 71719018 71719239 -80818020 + Lx LINE L1 6434 6654 0 2 1132 248 248 32 122 chr5 71719671 71719827 -80817432 - L1M3a LINE L1 -392 6135 5994 2 1132 740 216 119 23 chr5 71720233 71720456 -80816803 - L1M3a LINE L1 -753 5783 5546 2 1132 1568 75 0 5 chr5 71720456 71720669 -80816590 + L1_Mus1 LINE L1 6356 6567 0 2 1132 740 230 44 74 chr5 71720669 71720938 -80816321 - L1M3a LINE L1 -834 5545 5271 2 1132 432 275 63 63 chr5 71721117 71721451 -80815808 - L1M3a LINE L1 -2007 4372 4039 2 1132 582 318 0 0 chr5 71721457 71721586 -80815673 - B4A SINE B4 -159 133 5 2 1132 337 304 100 61 chr5 71721800 71722161 -80815098 - L1M3a LINE L1 -3991 2393 2019 2 1132 686 294 89 23 chr5 71722478 71722781 -80814478 - Lx8 LINE L1 -25 7448 7126 2 1132 385 253 62 3 chr5 71723162 71723381 -80813878 - L1M3a LINE L1 -4763 1550 1316 2 1132 261 0 0 0 chr5 71723471 71723500 -80813759 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1132 495 0 0 0 chr5 71723500 71723554 -80813705 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1132 438 330 31 35 chr5 71723691 71723920 -80813339 - L1M3a LINE L1 -4976 1327 1100 2 1132 2726 72 152 0 chr5 71724055 71724469 -80812790 + RLTR44C LTR ERVK 1 477 -25 3 1132 28 29 0 0 chr5 71725365 71725400 -80811859 + AT_rich Low_complexity Low_complexity 1 35 0 3 1132 677 34 11 0 chr5 71725620 71725708 -80811551 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 1132 1068 283 22 33 chr5 71725732 71726006 -80811253 - B4A SINE B4 -21 271 1 3 1132 8056 109 2 2 chr5 71726006 71727196 -80810063 + L1_Mm LINE L1 4694 5883 0 3 1132 316 330 10 10 chr5 71727263 71727361 -80809898 - RSINE1 SINE B4 -5 160 63 3 1132 257 294 80 18 chr5 71728197 71728360 -80808899 - L1MC3 LINE L1 -22 7763 7591 3 1132 22 0 0 0 chr5 71728423 71728445 -80808814 + AT_rich Low_complexity Low_complexity 1 22 0 3 1132 393 221 219 8 chr5 71728730 71728858 -80808401 + Lx9 LINE L1 6718 6872 -772 3 1132 2694 62 0 3 chr5 71728833 71729170 -80808089 - L1_Mus1 LINE L1 -207 5676 5341 3 1132 6677 75 14 1 chr5 71729165 71730049 -80807210 + L1_Mus1 LINE L1 5673 6567 0 3 1132 951 208 9 5 chr5 71730050 71730263 -80806996 + Lx9 LINE L1 6837 7050 -594 3 1132 707 98 16 0 chr5 71730295 71730417 -80806842 + (TAGA)n Simple_repeat Simple_repeat 3 126 0 3 1132 522 108 0 0 chr5 71730456 71730582 -80806677 + (TAGA)n Simple_repeat Simple_repeat 1 126 0 3 1132 1748 218 85 2 chr5 71730583 71731030 -80806229 + Lx9 LINE L1 7069 7552 -92 3 1132 23 0 0 0 chr5 71731077 71731100 -80806159 + AT_rich Low_complexity Low_complexity 1 23 0 3 1132 22 0 0 0 chr5 71731798 71731820 -80805439 + AT_rich Low_complexity Low_complexity 1 22 0 3 1132 280 306 223 0 chr5 71732120 71732241 -80805018 + RSINE1 SINE B4 1 148 -17 3 1132 754 157 51 19 chr5 71732392 71732548 -80804711 + L1Md_F3 LINE L1 6421 6581 -3 3 1132 372 77 0 0 chr5 71733184 71733236 -80804023 + (CATA)n Simple_repeat Simple_repeat 1 52 0 3 1132 38137 11 0 7 chr5 71733518 71739094 -80798165 + L1Md_A LINE L1 53 5586 -297 3 1132 8832 10 1 0 chr5 71739094 71740088 -80797171 + L1Md_A LINE L1 5587 6581 -1 3 1132 39 0 0 0 chr5 71740170 71740209 -80797050 + AT_rich Low_complexity Low_complexity 1 39 0 3 1132 440 341 6 0 chr5 71740320 71740387 -80796872 - Lx6 LINE L1 -26 7434 7368 3 1132 516 16 0 0 chr5 71740387 71740448 -80796811 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1132 440 341 6 0 chr5 71740448 71740550 -80796709 - Lx6 LINE L1 -93 7367 7265 3 1132 585 298 67 25 chr5 71740546 71740811 -80796448 + Lx5 LINE L1 6478 6690 -360 3 1132 21 57 0 0 chr5 71741844 71741879 -80795380 + AT_rich Low_complexity Low_complexity 1 35 0 3 1132 1435 150 57 25 chr5 71741938 71742219 -80795040 - Lx LINE L1 -1 6653 6364 3 1132 389 268 70 74 chr5 71742227 71742469 -80794790 + MLT1B LTR MaLR 78 318 -72 3 1132 649 315 14 59 chr5 71744549 71744903 -80792356 + RLTR15 LTR ERVK 1 338 -21 3 1132 227 274 54 14 chr5 71744905 71744979 -80792280 + L2 LINE L2 2370 2446 -973 3 1132 794 201 64 185 chr5 71745278 71745537 -80791722 - L1_Rod LINE L1 -348 5499 5242 3 1132 1131 68 0 20 chr5 71745537 71745687 -80791572 - B1_Mus1 SINE Alu 0 148 2 3 1132 794 201 64 185 chr5 71745687 71745848 -80791411 - L1_Rod LINE L1 -606 5241 5130 3 1132 378 179 36 29 chr5 71745848 71745986 -80791273 + Lx9 LINE L1 7506 7644 0 3 1132 306 252 22 80 chr5 71745986 71746018 -80791241 - L1_Mur3 LINE L1 -718 5162 5139 3 1132 728 293 44 5 chr5 71746058 71746264 -80790995 + MER20 DNA MER1_type 5 218 -1 3 1132 24 32 0 0 chr5 71746604 71746635 -80790624 + AT_rich Low_complexity Low_complexity 1 31 0 3 1132 1424 51 0 0 chr5 71746942 71747120 -80790139 - L1_Mus1 LINE L1 -606 5961 5784 3 1132 4524 53 0 5 chr5 71747120 71747688 -80789571 + L1_Mus1 LINE L1 6002 6566 -1 3 1132 2209 105 93 3 chr5 71749479 71749832 -80787427 - Lx3_Mus LINE L1 -1 7008 6624 3 1132 31199 91 22 16 chr5 71750453 71751711 -80785548 - L1Md_F2 LINE L1 0 6582 5317 3 1132 555 56 0 0 chr5 71751711 71751782 -80785477 + (TA)n Simple_repeat Simple_repeat 2 72 0 3 1132 31199 90 37 24 chr5 71751782 71756665 -80780594 - L1Md_F2 LINE L1 -567 5316 366 3 1132 429 352 56 6 chr5 71758614 71758794 -80778465 - MLT1A0 LTR MaLR -176 189 1 3 1132 621 204 27 88 chr5 71759923 71760166 -80777093 + Lx2 LINE L1 6791 7006 -2 3 1132 832 137 13 0 chr5 71760495 71760648 -80776611 + CT-rich Low_complexity Low_complexity 4 158 0 3 1132 21 36 0 0 chr5 71760770 71760798 -80776461 + AT_rich Low_complexity Low_complexity 1 28 0 3 1132 348 143 11 42 chr5 71761192 71761287 -80775972 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 3 1132 4947 114 4 3 chr5 71761763 71762521 -80774738 + L1_Mm LINE L1 3434 4192 -1691 3 1132 1902 141 6 9 chr5 71762512 71762848 -80774411 + L1_Mm LINE L1 5036 5370 -513 3 1132 7926 125 6 2 chr5 71762859 71764074 -80773185 - L1_Mm LINE L1 -11 5872 4653 3 1132 27 87 0 0 chr5 71764174 71764243 -80773016 + AT_rich Low_complexity Low_complexity 1 69 0 3 1132 537 244 256 0 chr5 71764462 71764630 -80772629 + B3 SINE B2 1 211 -5 3 1132 589 259 84 30 chr5 71765037 71765240 -80772019 + MTEb LTR MaLR 165 378 -1 3 1132 26 64 0 0 chr5 71765310 71765357 -80771902 + AT_rich Low_complexity Low_complexity 1 47 0 3 1132 6086 188 56 10 chr5 71765487 71767766 -80769493 + Lx5 LINE L1 4651 7043 -7 3 1132 1855 309 122 32 chr5 71767977 71768663 -80768596 - Lx8 LINE L1 -3 7470 6735 3 1132 1260 85 11 5 chr5 71768663 71768852 -80768407 - L1_Mus3 LINE L1 -2 6636 6447 3 1132 1855 321 115 26 chr5 71768852 71769244 -80768015 - Lx8 LINE L1 -739 6734 6414 3 1132 21 36 0 0 chr5 71769340 71769368 -80767891 + AT_rich Low_complexity Low_complexity 1 28 0 3 1132 13968 57 1 1 chr5 71770004 71772453 -80764806 - L1Md_F2 LINE L1 -1 6581 4133 3 1132 35 41 0 0 chr5 71772455 71772504 -80764755 + AT_rich Low_complexity Low_complexity 1 49 0 3 1132 34034 30 1 0 chr5 71773812 71780654 -80756605 - L1Md_T LINE L1 0 6585 1 3 1132 14700 150 20 78 chr5 71781835 71783920 -80753339 - Lx LINE L1 0 6654 4674 3 1132 1597 111 0 21 chr5 71783920 71784159 -80753100 - L1_Mus1 LINE L1 -2 6565 6332 3 1132 14700 164 6 142 chr5 71784159 71784626 -80752633 - Lx LINE L1 -1213 4673 4633 3 1132 2988 79 27 5 chr5 71784626 71785035 -80752224 - L1Md_F2 LINE L1 -2 6580 6163 3 1132 14700 164 6 142 chr5 71785035 71787274 -80749985 - Lx LINE L1 -1254 4632 2393 3 1132 4690 89 9 0 chr5 71787265 71788194 -80749065 - L1VL2 LINE L1 -2363 1252 314 3 1132 2879 243 99 19 chr5 71789046 71789947 -80747312 + Lx9 LINE L1 6636 7608 -36 3 1132 50 42 0 0 chr5 71790093 71790164 -80747095 + AT_rich Low_complexity Low_complexity 1 71 0 3 1132 1120 95 0 0 chr5 71790214 71790362 -80746897 - B1_Mus1 SINE Alu 0 148 1 3 1132 2911 34 17 86 chr5 71790523 71790940 -80746319 - RLTR10 LTR ERVK -2 388 1 3 1132 10456 112 48 42 chr5 71790942 71792914 -80744345 - RLTR10-int LTR ERVK -3 1984 1 3 1132 3087 42 13 5 chr5 71792915 71793300 -80743959 - RLTR10 LTR ERVK -2 388 1 3 1132 7915 30 0 1 chr5 71793300 71794899 -80742360 - L1Md_A LINE L1 -2 6580 4984 3 1132 763 282 138 45 chr5 71795022 71795312 -80741947 - ORR1E LTR MaLR -4 355 39 3 1132 26990 109 7 3 chr5 71795451 71800511 -80736748 - L1_Mus1 LINE L1 0 6654 1493 3 1132 3979 155 21 3 chr5 71800501 71801648 -80735611 - L1_Mus1 LINE L1 -4297 1586 387 3 1132 288 284 0 197 chr5 71801658 71801694 -80735565 - PB1D7 SINE Alu -2 118 92 3 1132 470 117 0 0 chr5 71801694 71801771 -80735488 - Lx LINE L1 -7 6647 6571 3 1132 297 284 10 186 chr5 71801771 71801866 -80735393 - B1F SINE Alu -29 120 12 3 1132 2752 118 5 0 chr5 71802111 71802516 -80734743 - MTB_Mm LTR MaLR 0 407 1 3 1132 272 356 68 8 chr5 71802574 71802707 -80734552 + Zaphod DNA Tip100 387 527 -3504 3 1132 423 0 0 0 chr5 71802781 71802828 -80734431 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1132 7703 102 27 3 chr5 71802834 71804081 -80733178 - Lx3A LINE L1 -273 6708 5454 3 1132 2727 13 3 0 chr5 71804081 71804393 -80732866 - L1Md_A LINE L1 -1 6581 6269 3 1132 7703 92 53 4 chr5 71804393 71805142 -80732117 - Lx3A LINE L1 -433 5453 4647 3 1132 4850 98 32 5 chr5 71805142 71805929 -80731330 + Lx3A LINE L1 3845 4652 -1234 3 1132 28 48 0 0 chr5 71806004 71806046 -80731213 + AT_rich Low_complexity Low_complexity 1 42 0 3 1132 916 283 132 14 chr5 71807019 71807367 -80729892 + Lx8 LINE L1 6131 6519 -954 3 1132 3594 68 0 0 chr5 71807404 71807903 -80729356 - L1_Mm LINE L1 -3081 2802 2304 3 1132 4278 44 9 0 chr5 71807894 71808444 -80728815 + L1Md_F2 LINE L1 6003 6557 -25 3 1132 1238 341 39 11 chr5 71808456 71809073 -80728186 + Lx8 LINE L1 6582 7215 -258 3 1132 1298 200 141 21 chr5 71809077 71809404 -80727855 - ORR1C2 LTR MaLR 0 384 19 3 1132 653 213 37 5 chr5 71809406 71809581 -80727678 - B3 SINE B2 -4 191 3 3 1132 331 294 84 42 chr5 71809611 71809849 -80727410 + Lx8 LINE L1 7216 7463 -10 3 1132 635 81 10 0 chr5 71810000 71810099 -80727160 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 3 1132 348 127 0 0 chr5 71810356 71810411 -80726848 + (T)n Simple_repeat Simple_repeat 1 55 0 3 1132 279 157 43 0 chr5 71810414 71810484 -80726775 + GA-rich Low_complexity Low_complexity 4 76 0 3 1132 381 349 28 15 chr5 71810487 71810692 -80726567 - L1MC1 LINE L1 -313 6195 5987 3 1132 1712 16 0 0 chr5 71810703 71810895 -80726364 - B2_Mm1t SINE B2 0 193 2 3 1132 590 247 30 64 chr5 71810906 71811109 -80726150 - B3A SINE B2 0 198 3 3 1132 553 69 11 11 chr5 71811131 71811219 -80726040 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 3 1132 8988 68 6 2 chr5 71811236 71813169 -80724090 - L1Md_F2 LINE L1 -12 6570 4635 3 1132 414 0 0 0 chr5 71813176 71813222 -80724037 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 3 1132 259 341 0 23 chr5 71813282 71813369 -80723890 - RSINE1 SINE B4 -80 85 1 3 1132 576 214 0 91 chr5 71813381 71813535 -80723724 + RMER19B LTR ERVK 309 448 -454 3 1132 740 274 18 18 chr5 71813535 71813762 -80723497 - L1MC1 LINE L1 -571 5937 5711 3 1132 366 263 11 0 chr5 71813797 71813892 -80723367 - PB1D10 SINE Alu 0 117 22 3 1132 2853 98 0 51 chr5 71813914 71814343 -80722916 + MTB_Mm LTR MaLR 1 407 0 3 1132 4535 90 6 13 chr5 71814409 71815039 -80722220 - L1_Mus3 LINE L1 -2 6636 6011 3 1132 429 311 119 42 chr5 71815068 71815901 -80721358 - L1MC1 LINE L1 -753 5568 4672 3 1132 644 283 110 53 chr5 71816183 71816604 -80720655 - L1MC1 LINE L1 -4707 1801 1366 3 1132 839 88 16 0 chr5 71816604 71816729 -80720530 + (TTTC)n Simple_repeat Simple_repeat 3 129 0 3 1132 644 283 110 53 chr5 71816729 71817117 -80720142 - L1MC1 LINE L1 -5143 1365 948 3 1132 23 0 0 0 chr5 71817161 71817184 -80720075 + AT_rich Low_complexity Low_complexity 1 23 0 3 1132 206 53 79 0 chr5 71817270 71817308 -80719951 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1132 352 326 148 36 chr5 71817564 71817984 -80719275 - L1MC1 LINE L1 -5795 713 247 3 1132 1155 269 67 56 chr5 71818016 71818358 -80718901 + ORR1E LTR MaLR 9 354 -5 3 1132 230 288 0 59 chr5 71818450 71818535 -80718724 - L1MC1 LINE L1 -6421 87 8 3 1132 253 354 66 33 chr5 71818657 71818809 -80718450 - MLT1K LTR MaLR -15 580 424 3 1132 372 88 0 0 chr5 71819153 71819210 -80718049 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1132 448 325 131 31 chr5 71819406 71819666 -80717593 + RMER15 LTR ERVL 273 558 -17 3 1132 228 86 0 0 chr5 71820926 71820961 -80716298 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1132 363 23 0 0 chr5 71820961 71821005 -80716254 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1132 288 218 62 25 chr5 71821085 71821165 -80716094 - ORR1E LTR MaLR 0 379 297 4 1132 1269 258 55 9 chr5 71821175 71821519 -80715740 + ORR1D2 LTR MaLR 8 367 -3 4 1132 979 314 4 4 chr5 71821525 71821771 -80715488 - ORR1E LTR MaLR -111 248 3 4 1132 2872 111 10 13 chr5 71822264 71822880 -80714379 + L1VL4 LINE L1 433 1045 -2514 4 1132 3257 95 23 0 chr5 71822879 71823534 -80713725 - Lx3_Mus LINE L1 -928 6081 5416 4 1132 4100 88 22 2 chr5 71823534 71824089 -80713170 + Lx3_Mus LINE L1 6444 7009 0 4 1132 399 41 0 0 chr5 71824184 71824233 -80713026 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 1132 5147 145 46 25 chr5 71824235 71825161 -80712098 + Lx2B LINE L1 6050 6995 -5 4 1132 1324 188 54 22 chr5 71825723 71826000 -80711259 + ORR1B2 LTR MaLR 1 286 -81 4 1132 647 264 70 100 chr5 71826003 71826373 -80710886 + RLTR15 LTR ERVK 1 359 0 4 1132 543 115 0 0 chr5 71826373 71826451 -80710808 + ORR1B2 LTR MaLR 290 367 0 4 1132 216 86 0 0 chr5 71826706 71826741 -80710518 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1132 311 0 0 25 chr5 71827137 71827177 -80710082 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 4 1133 225 315 153 8 chr5 71828528 71828659 -80708600 - L1MC LINE L1 -2243 5639 5490 4 1133 340 374 17 11 chr5 71832108 71832284 -80704975 + ERVL-E-int LTR ERVL 4564 4740 -927 4 1133 272 365 95 15 chr5 71832350 71832550 -80704709 + MLT1F2 LTR MaLR 329 544 -16 4 1133 5066 160 0 2 chr5 71832826 71833652 -80703607 + Lx LINE L1 5827 6650 -4 4 1133 219 36 0 0 chr5 71833654 71833682 -80703577 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1133 216 103 26 0 chr5 71834133 71834172 -80703087 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 4 1133 258 81 0 0 chr5 71834533 71834570 -80702689 + (GCATG)n Simple_repeat Simple_repeat 2 38 0 4 1133 378 352 70 7 chr5 71834711 71834983 -80702276 - B4A SINE B4 -1 291 3 4 1133 3413 50 11 11 chr5 71835119 71835562 -80701697 + L1Md_F2 LINE L1 6138 6580 -2 4 1133 450 359 40 89 chr5 71836151 71836509 -80700750 + ORR1E LTR MaLR 9 379 0 4 1133 1157 69 14 0 chr5 71836604 71836749 -80700510 + B1_Mus2 SINE Alu 1 147 0 4 1133 226 213 32 16 chr5 71837397 71837459 -80699800 + (CCAA)n Simple_repeat Simple_repeat 2 64 0 4 1133 1369 65 16 0 chr5 71837636 71837822 -80699437 + L1_Mus1 LINE L1 6379 6567 0 4 1133 612 40 0 0 chr5 71837822 71837897 -80699362 + (GA)n Simple_repeat Simple_repeat 2 76 0 4 1133 628 238 25 121 chr5 71838398 71838637 -80698622 + B3 SINE B2 1 216 0 4 1133 299 323 0 31 chr5 71838926 71839054 -80698205 + GA-rich Low_complexity Low_complexity 6 129 0 4 1133 195 286 103 62 chr5 71839462 71839559 -80697700 - MER5A DNA MER1_type -28 161 61 4 1133 206 77 0 71 chr5 71839560 71839602 -80697657 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1133 3855 89 2 0 chr5 71841065 71841584 -80695675 + L1_Mus2 LINE L1 6047 6566 0 4 1133 7041 85 4 2 chr5 71843584 71844523 -80692736 + L1_Mus2 LINE L1 5625 6565 -1 4 1133 181 30 0 83 chr5 71844529 71844565 -80692694 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1133 915 266 119 26 chr5 71844596 71844690 -80692569 + Lx7 LINE L1 6882 6981 -715 4 1133 483 18 0 0 chr5 71844690 71844746 -80692513 + (TAA)n Simple_repeat Simple_repeat 2 57 0 4 1133 915 266 119 26 chr5 71844746 71844994 -80692265 + Lx7 LINE L1 6982 7255 -441 4 1133 9257 190 100 36 chr5 71844991 71847580 -80689679 + L1_Mur3 LINE L1 2865 5620 -260 4 1133 1150 249 0 16 chr5 71847576 71847821 -80689438 - Lx6 LINE L1 -266 7194 6954 4 1133 692 80 0 10 chr5 71847865 71847966 -80689293 + (GGGA)n Simple_repeat Simple_repeat 3 102 0 4 1133 182 310 0 17 chr5 71848291 71848350 -80688909 - MIR3 SINE MIR -150 58 1 4 1133 229 328 25 51 chr5 71849056 71849176 -80688083 + MIRc SINE MIR 47 164 -98 4 1133 23 33 0 0 chr5 71849308 71849338 -80687921 + AT_rich Low_complexity Low_complexity 1 30 0 4 1133 1265 270 42 77 chr5 71849737 71850571 -80686688 + L1MA9 LINE L1 3691 4495 -1645 4 1133 409 288 41 75 chr5 71850704 71850837 -80686422 + L1MA9 LINE L1 4865 5002 -1138 4 1133 2931 62 31 0 chr5 71850837 71851221 -80686038 + L1Md_F2 LINE L1 6175 6570 -12 4 1133 409 288 41 75 chr5 71851221 71851380 -80685879 + L1MA9 LINE L1 5003 5147 -993 4 1133 276 200 0 0 chr5 71851493 71851558 -80685701 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 4 1133 555 152 111 0 chr5 71851620 71851719 -80685540 + B1_Mm SINE Alu 4 113 -34 4 1133 24 0 0 0 chr5 71851720 71851744 -80685515 + AT_rich Low_complexity Low_complexity 1 24 0 4 1133 1003 88 0 7 chr5 71851744 71851892 -80685367 - L1_Mus1 LINE L1 0 6567 6421 4 1133 240 88 35 17 chr5 71851920 71851978 -80685281 + (CAAAA)n Simple_repeat Simple_repeat 1 59 0 4 1133 831 311 100 63 chr5 71852413 71853244 -80684015 + L1MA9 LINE L1 5368 6236 -76 4 1133 186 43 0 0 chr5 71853244 71853267 -80683992 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1133 831 311 100 63 chr5 71853267 71853285 -80683974 + L1MA9 LINE L1 6237 6252 -60 4 1133 1607 169 102 46 chr5 71853285 71853658 -80683601 + ORR1B1 LTR MaLR 1 394 0 4 1133 831 311 100 63 chr5 71853658 71853716 -80683543 + L1MA9 LINE L1 6253 6309 -3 4 1133 326 82 0 0 chr5 71854596 71854645 -80682614 + L1_Mus4 LINE L1 5784 5832 -804 4 1133 555 188 0 0 chr5 71854860 71854977 -80682282 + (TA)n Simple_repeat Simple_repeat 1 117 0 4 1133 329 182 0 0 chr5 71854992 71855047 -80682212 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1133 2285 218 23 28 chr5 71855081 71855652 -80681607 - L1_Rod LINE L1 -20 5827 5260 4 1133 492 49 25 0 chr5 71855760 71855841 -80681418 + L1Md_F3 LINE L1 6500 6582 -2 4 1133 208 352 88 29 chr5 71855856 71856094 -80681165 - L2a LINE L2 -297 3129 2877 4 1133 1155 96 0 31 chr5 71856235 71856428 -80680831 + L1_Mus4 LINE L1 6448 6634 -2 4 1133 7833 52 1 5 chr5 71856921 71857898 -80679361 - L1Md_F2 LINE L1 -2 6580 5608 4 1133 4518 70 0 0 chr5 71857895 71858482 -80678777 + L1Md_F2 LINE L1 4995 5581 -302 4 1133 2740 53 0 12 chr5 71858753 71859099 -80678160 - ORR1A0 LTR MaLR -4 342 1 4 1133 958 120 7 7 chr5 71859469 71859607 -80677652 + B1_Mus1 SINE Alu 1 139 -9 4 1133 509 30 0 15 chr5 71859607 71859675 -80677584 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1133 868 221 18 46 chr5 71859836 71860054 -80677205 + B3 SINE B2 4 215 -1 4 1133 21 0 0 0 chr5 71860182 71860203 -80677056 + AT_rich Low_complexity Low_complexity 1 21 0 4 1133 915 267 55 33 chr5 71860875 71861204 -80676055 - L1M2 LINE L1 -530 5782 5447 4 1133 297 0 0 0 chr5 71861979 71862012 -80675247 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1133 401 200 46 28 chr5 71862015 71862123 -80675136 + Lx9 LINE L1 7329 7438 -206 4 1133 27 0 0 0 chr5 71862175 71862202 -80675057 + AT_rich Low_complexity Low_complexity 1 27 0 4 1133 603 149 0 0 chr5 71862907 71863014 -80674245 + (GGGA)n Simple_repeat Simple_repeat 4 110 0 4 1133 28 61 0 0 chr5 71863772 71863821 -80673438 + AT_rich Low_complexity Low_complexity 1 49 0 4 1133 445 327 0 36 chr5 71864305 71864473 -80672786 - RSINE1 SINE B4 0 165 4 4 1133 659 305 17 28 chr5 71864557 71864736 -80672523 - B3 SINE B2 -5 211 35 4 1133 577 299 139 39 chr5 71865182 71865519 -80671740 + ERVL-E-int LTR ERVL 3105 3475 -2192 4 1133 334 312 53 11 chr5 71865704 71865798 -80671461 + PB1D10 SINE Alu 9 106 -11 4 1133 814 236 11 11 chr5 71868456 71868644 -80668615 - B3 SINE B2 -5 211 24 4 1133 633 234 61 33 chr5 71868950 71869162 -80668097 + Lx2B LINE L1 6783 7000 0 4 1133 1256 129 46 21 chr5 71869380 71869617 -80667642 + Lx3C LINE L1 6732 6974 -2 4 1133 601 235 72 72 chr5 71870269 71870462 -80666797 - B3A SINE B2 -1 197 5 4 1133 1079 183 75 53 chr5 71871888 71872206 -80665053 + Lx7 LINE L1 7372 7696 0 4 1133 218 217 0 0 chr5 71873323 71873369 -80663890 + A-rich Low_complexity Low_complexity 1 46 0 4 1133 291 85 0 0 chr5 71874071 71874118 -80663141 + (A)n Simple_repeat Simple_repeat 1 47 0 4 1133 185 350 20 20 chr5 71874279 71874378 -80662881 + L3 LINE CR1 2740 2838 -1651 4 1133 364 310 53 0 chr5 71874378 71874491 -80662768 + RCHARR1 DNA MER1_type 45 163 -811 4 1133 403 234 232 6 chr5 71874543 71874711 -80662548 + RCHARR1 DNA MER1_type 445 650 -324 4 1133 316 208 83 0 chr5 71874868 71874940 -80662319 - RCHARR1 DNA MER1_type -227 747 670 4 1133 547 306 43 18 chr5 71874934 71875097 -80662162 - B4A SINE B4 -122 170 4 4 1133 318 248 55 23 chr5 71875098 71875226 -80662033 + RCHARR1 DNA MER1_type 726 857 -117 4 1133 1093 289 35 55 chr5 71875228 71875594 -80661665 + MTEb LTR MaLR 14 372 -7 4 1133 705 146 0 0 chr5 71875623 71875760 -80661499 + (TA)n Simple_repeat Simple_repeat 2 138 0 4 1133 323 200 12 62 chr5 71877355 71877435 -80659824 + L1MCc LINE L1 1433 1508 -4980 4 1133 216 86 0 0 chr5 71877824 71877859 -80659400 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1133 797 130 0 47 chr5 71878159 71878329 -80658930 + A-rich Low_complexity Low_complexity 3 164 0 4 1133 549 0 0 0 chr5 71878332 71878393 -80658866 + (GGGA)n Simple_repeat Simple_repeat 2 62 0 4 1133 467 321 50 55 chr5 71878393 71878594 -80658665 + B4A SINE B4 83 282 -10 4 1133 437 50 17 0 chr5 71878613 71878673 -80658586 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1133 229 200 0 32 chr5 71878752 71878814 -80658445 + L1MCc LINE L1 2734 2793 -4541 4 1133 374 312 39 55 chr5 71878878 71879132 -80658127 + L1ME2 LINE L1 5865 6114 -50 4 1133 301 308 77 48 chr5 71879179 71879387 -80657872 + L1M5 LINE L1 5118 5331 -815 4 1133 1430 244 71 62 chr5 71880472 71880846 -80656413 + Lx9 LINE L1 5825 6305 -1339 4 1133 1641 187 57 9 chr5 71880846 71881196 -80656063 + ORR1B2 LTR MaLR 1 367 0 4 1133 1430 244 78 52 chr5 71881196 71881526 -80655733 + Lx9 LINE L1 6306 6646 -998 4 1133 1589 175 46 28 chr5 71881536 71881860 -80655399 + Lx9 LINE L1 6800 7129 -515 4 1133 745 175 29 0 chr5 71881839 71881976 -80655283 + Lx9 LINE L1 7334 7474 -170 4 1133 414 53 0 0 chr5 71881976 71882033 -80655226 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1133 188 67 33 0 chr5 71882033 71882063 -80655196 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1133 21 57 0 0 chr5 71882098 71882133 -80655126 + AT_rich Low_complexity Low_complexity 1 35 0 4 1133 1452 104 0 5 chr5 71882135 71882347 -80654912 - Lx LINE L1 -3 6651 6441 5 1133 821 251 205 0 chr5 71882468 71882760 -80654499 - MTD LTR MaLR -67 352 1 5 1133 352 346 0 35 chr5 71882760 71882892 -80654367 + B1_Mus1 SINE Alu 21 147 -1 5 1133 21 0 0 0 chr5 71882894 71882915 -80654344 + AT_rich Low_complexity Low_complexity 1 21 0 5 1133 1329 244 45 27 chr5 71883269 71883643 -80653616 + Lx8 LINE L1 6726 7106 -367 5 1133 315 279 80 48 chr5 71884137 71884274 -80652985 + B3 SINE B2 1 169 -29 5 1133 540 56 0 0 chr5 71884274 71884346 -80652913 + (TC)n Simple_repeat Simple_repeat 1 72 0 5 1133 297 278 16 65 chr5 71884346 71884366 -80652893 + B3A SINE B2 170 187 -11 5 1133 250 284 17 33 chr5 71884621 71884741 -80652518 + L1MB4 LINE L1 6025 6142 -38 5 1133 495 0 0 0 chr5 71885851 71885906 -80651353 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1133 354 23 0 0 chr5 71885906 71885948 -80651311 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1133 222 105 0 0 chr5 71885948 71885986 -80651273 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1133 541 15 0 0 chr5 71887323 71887391 -80649868 + L1Md_T LINE L1 6515 6582 0 5 1133 21 0 0 0 chr5 71887750 71887771 -80649488 + AT_rich Low_complexity Low_complexity 1 21 0 5 1133 1770 176 102 5 chr5 71888498 71888880 -80648379 - MTC LTR MaLR 0 421 3 5 1133 382 247 0 12 chr5 71888880 71888966 -80648293 - Lx2 LINE L1 -620 6377 6293 5 1133 503 230 179 6 chr5 71888951 71889113 -80648146 + Lx2B LINE L1 6798 6987 -13 5 1133 1978 216 87 57 chr5 71889133 71890054 -80647205 - MTC-int LTR MaLR 0 1098 1 5 1133 2039 201 19 30 chr5 71890054 71890480 -80646779 - MTC LTR MaLR 0 421 1 5 1133 371 324 10 1 chr5 71891315 71891491 -80645768 - L1M2 LINE L1 -359 5797 5618 5 1133 24 0 0 0 chr5 71892534 71892558 -80644701 + AT_rich Low_complexity Low_complexity 1 24 0 5 1133 27 49 0 0 chr5 71893871 71893912 -80643347 + AT_rich Low_complexity Low_complexity 1 41 0 5 1133 648 88 122 9 chr5 71894087 71894202 -80643057 - RMER6B LTR ERVK -326 135 8 5 1133 345 294 54 18 chr5 71894304 71894415 -80642844 - ID_B1 SINE B4 0 224 110 5 1133 284 276 15 19 chr5 71894502 71894597 -80642662 - PB1D10 SINE Alu -44 105 13 5 1133 221 346 48 71 chr5 71894597 71894670 -80642589 - ID_B1 SINE B4 -41 183 20 5 1133 357 113 0 0 chr5 71895093 71895146 -80642113 + B1_Mur4 SINE Alu 3 55 -95 5 1133 284 159 31 31 chr5 71895146 71895157 -80642102 + ID_B1 SINE B4 84 147 -77 5 1133 230 200 52 72 chr5 71895196 71895293 -80641966 + RLTR25B LTR ERVK 415 509 -519 5 1133 775 37 0 36 chr5 71895226 71895337 -80641922 + B1_Mus2 SINE Alu 40 146 -1 5 1133 197 299 221 0 chr5 71896171 71896248 -80641011 - L2a LINE L2 -35 3391 3298 5 1133 799 320 89 33 chr5 71896885 71897405 -80639854 + MLT1E1 LTR MaLR 9 645 -9 5 1133 27 0 0 0 chr5 71897506 71897533 -80639726 + AT_rich Low_complexity Low_complexity 1 27 0 5 1133 334 317 152 6 chr5 71898768 71898933 -80638326 - L1MC4a LINE L1 -73 7809 7621 5 1133 580 228 50 71 chr5 71898941 71899185 -80638074 - LTRIS4 LTR ERV1 0 507 276 5 1133 31 0 0 0 chr5 71899271 71899302 -80637957 + GC_rich Low_complexity Low_complexity 1 31 0 5 1133 21 0 0 0 chr5 71899321 71899342 -80637917 + AT_rich Low_complexity Low_complexity 1 21 0 5 1133 339 328 115 38 chr5 71899349 71899408 -80637851 - L1MC4a LINE L1 -271 7611 7550 5 1133 400 283 18 0 chr5 71899408 71899521 -80637738 - PB1D10 SINE Alu -1 116 2 5 1133 339 328 115 38 chr5 71899521 71899879 -80637380 - L1MC4a LINE L1 -333 7549 7162 5 1133 333 307 89 5 chr5 71899920 71900133 -80637126 - L1MC4a LINE L1 -921 7074 6844 5 1133 313 264 99 9 chr5 71900292 71900403 -80636856 - MER82 DNA MER2_type -6 647 527 5 1133 401 318 80 10 chr5 71900583 71900783 -80636476 - MER82 DNA MER2_type -224 429 216 5 1133 655 264 65 42 chr5 71901254 71901563 -80635696 - L1_Mur3 LINE L1 -1122 4758 4443 5 1133 2320 101 164 5 chr5 71901632 71902009 -80635250 + RLTR9B LTR ERVK 1 437 0 5 1133 505 338 70 8 chr5 71902032 71902274 -80634985 + Lx8 LINE L1 6483 6739 -734 5 1133 799 233 29 17 chr5 71902282 71902457 -80634802 - RLTR18B LTR ERVK -4 508 332 5 1133 2841 88 2 100 chr5 71902457 71902936 -80634323 - L1_Mm LINE L1 -325 5558 5127 5 1133 2365 55 3 0 chr5 71902932 71903225 -80634034 - L1_Mus1 LINE L1 -684 5883 5590 5 1133 5199 67 7 0 chr5 71903225 71903901 -80633358 + L1_Mus1 LINE L1 5885 6565 -2 5 1133 1602 202 61 55 chr5 71903951 71904312 -80632947 - RLTR18B LTR ERVK -149 363 1 5 1133 873 336 58 32 chr5 71904314 71904913 -80632346 + Lx8 LINE L1 6736 7350 -123 5 1133 1216 296 182 34 chr5 71904972 71905589 -80631670 + Lx8 LINE L1 6221 6928 -545 5 1133 502 343 162 0 chr5 71905606 71905915 -80631344 + Lx8 LINE L1 7000 7358 -115 5 1133 195 69 0 0 chr5 71905981 71906010 -80631249 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1133 4207 135 39 12 chr5 71906075 71906382 -80630877 + RMER6A LTR ERVK 1 326 -430 5 1133 396 0 0 0 chr5 71906382 71906426 -80630833 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 5 1133 4207 135 39 12 chr5 71906426 71906854 -80630405 + RMER6A LTR ERVK 327 755 -1 5 1133 351 287 46 9 chr5 71907328 71907437 -80629822 + Lx9 LINE L1 7081 7193 -451 5 1133 3771 198 42 6 chr5 71907673 71908465 -80628794 + Lx9 LINE L1 6306 7125 -519 5 1133 405 0 0 0 chr5 71909788 71909833 -80627426 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1133 636 298 7 0 chr5 71911744 71911885 -80625374 + RSINE1 SINE B4 19 160 -5 5 1133 485 92 13 0 chr5 71912171 71912247 -80625012 + (GA)n Simple_repeat Simple_repeat 2 78 0 5 1133 64 14 0 0 chr5 71912778 71912849 -80624410 + AT_rich Low_complexity Low_complexity 1 71 0 5 1133 360 102 68 0 chr5 71915635 71915694 -80621565 + B2_Mm2 SINE B2 36 98 -97 5 1133 22 35 0 0 chr5 71915694 71915723 -80621536 + AT_rich Low_complexity Low_complexity 1 29 0 5 1133 333 0 0 0 chr5 71916105 71916142 -80621117 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1133 36394 56 1 24 chr5 71916984 71922662 -80614597 + L1Md_T LINE L1 104 5586 -297 5 1133 7998 57 0 0 chr5 71922662 71923658 -80613601 + L1Md_T LINE L1 5587 6582 0 5 1133 222 37 0 0 chr5 71924997 71925024 -80612235 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1133 465 238 129 15 chr5 71925419 71925551 -80611708 + B1_Mur3 SINE Alu 1 147 -2 5 1133 1823 228 88 24 chr5 71926264 71926865 -80610394 + RLTR18 LTR ERVK 1 527 -89 5 1133 528 16 0 0 chr5 71929123 71929184 -80608075 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 5 1133 2153 319 50 32 chr5 71930131 71931212 -80606047 + Lx7 LINE L1 6326 7443 -30 5 1133 27 29 0 0 chr5 71931325 71931359 -80605900 + AT_rich Low_complexity Low_complexity 1 34 0 5 1133 189 0 0 0 chr5 71931682 71931703 -80605556 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1133 256 304 0 0 chr5 71932933 71933002 -80604257 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1133 259 254 17 0 chr5 71933001 71933060 -80604199 + GA-rich Low_complexity Low_complexity 2 61 0 5 1133 911 89 7 0 chr5 71933063 71933198 -80604061 + (GGGA)n Simple_repeat Simple_repeat 2 137 0 5 1133 332 355 37 75 chr5 71934436 71934704 -80602555 + L1MC4a LINE L1 5721 5978 -1904 5 1133 1376 99 298 0 chr5 71934833 71935085 -80602174 + ORR1A4 LTR MaLR 1 327 -2 5 1133 2364 243 133 96 chr5 71936581 71936792 -80600467 + Lx6 LINE L1 6531 6737 -723 5 1133 623 25 25 0 chr5 71936792 71936872 -80600387 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 5 1133 2364 243 133 96 chr5 71936872 71937535 -80599724 + Lx6 LINE L1 6738 7437 -23 5 1133 22 0 0 0 chr5 71937889 71937911 -80599348 + AT_rich Low_complexity Low_complexity 1 22 0 5 1133 290 312 101 63 chr5 71939894 71940291 -80596968 - BLACKJACK DNA AcHobo -3 2941 2530 5 1133 1357 214 56 96 chr5 71940285 71940662 -80596597 + ORR1D1 LTR MaLR 11 372 -2 5 1133 537 231 23 23 chr5 71941648 71941781 -80595478 + B1F SINE Alu 5 137 -12 5 1133 238 341 141 39 chr5 71941868 71941996 -80595263 + B1F2 SINE Alu 2 142 -7 5 1133 276 332 175 22 chr5 71942158 71942426 -80594833 - BLACKJACK DNA AcHobo -1991 953 645 5 1133 22 35 0 0 chr5 71942674 71942703 -80594556 + AT_rich Low_complexity Low_complexity 1 29 0 5 1133 36 40 0 0 chr5 71947121 71947171 -80590088 + AT_rich Low_complexity Low_complexity 1 50 0 5 1133 35403 37 1 1 chr5 71947200 71953515 -80583744 + L1Md_T LINE L1 1 5589 -297 5 1133 8938 7 0 0 chr5 71953515 71954511 -80582748 + L1Md_T LINE L1 5590 6585 0 5 1133 23 0 0 0 chr5 71954511 71954534 -80582725 + AT_rich Low_complexity Low_complexity 1 23 0 5 1133 315 0 0 0 chr5 71954549 71954584 -80582675 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1133 438 20 0 0 chr5 71954659 71954710 -80582549 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1133 252 0 0 0 chr5 71954710 71954737 -80582522 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1133 2806 80 34 20 chr5 71954773 71955180 -80582079 - L1Md_F2 LINE L1 0 6582 6170 5 1133 522 320 125 25 chr5 71955324 71955564 -80581695 - B4A SINE B4 -27 265 2 5 1133 225 0 0 0 chr5 71955651 71955676 -80581583 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 5 1133 216 0 0 0 chr5 71957857 71957881 -80579378 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1133 295 260 0 54 chr5 71957904 71958007 -80579252 - B1_Mm SINE Alu -8 141 49 5 1133 535 224 53 102 chr5 71958047 71958291 -80578968 - Lx9 LINE L1 -1 7643 7412 5 141 21 36 0 0 chr5 71958505 71958533 -80578726 + AT_rich Low_complexity Low_complexity 1 28 0 5 1134 861 10 0 0 chr5 71963701 71963799 -80573460 + (TCTA)n Simple_repeat Simple_repeat 2 99 0 5 1134 512 327 25 0 chr5 71964349 71964508 -80572751 + RSINE1 SINE B4 3 165 0 5 1134 510 31 0 0 chr5 71964593 71964657 -80572602 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1134 308 311 32 44 chr5 71964761 71964919 -80572340 + L1MEc LINE L1 36 191 -6209 5 1134 1010 8 8 0 chr5 71965150 71965269 -80571990 + (GA)n Simple_repeat Simple_repeat 1 120 0 5 1134 228 297 25 75 chr5 71965369 71965529 -80571730 + L1MEc LINE L1 605 756 -5644 5 1134 19310 111 28 17 chr5 71965618 71967745 -80569514 + L1Md_F2 LINE L1 188 2343 -3540 5 1134 3076 8 43 0 chr5 71967745 71968097 -80569162 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1134 19310 120 48 10 chr5 71968097 71971018 -80566241 + L1Md_F2 LINE L1 2344 5589 -297 5 1134 7217 80 6 9 chr5 71971018 71972016 -80565243 + L1Md_F2 LINE L1 5587 6581 -1 5 1134 318 341 122 29 chr5 71972018 71972190 -80565069 + MLT1H LTR MaLR 23 210 -339 5 1134 601 312 55 34 chr5 71972855 71972953 -80564306 + LTR37B LTR ERV1 9 107 -361 5 1134 258 32 0 0 chr5 71972953 71972984 -80564275 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 1134 601 312 55 34 chr5 71972984 71973177 -80564082 + LTR37B LTR ERV1 108 306 -162 5 1134 231 328 16 0 chr5 71973432 71973496 -80563763 + RSINE1 SINE B4 79 143 -22 6 1134 291 54 0 0 chr5 71973643 71973680 -80563579 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1134 632 178 121 23 chr5 71974239 71974371 -80562888 + B1_Mus2 SINE Alu 2 146 -1 6 1134 243 0 0 0 chr5 71974372 71974399 -80562860 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 6 1134 22 35 0 0 chr5 71974612 71974641 -80562618 + AT_rich Low_complexity Low_complexity 1 29 0 6 1134 185 0 40 0 chr5 71975611 71975636 -80561623 + (TA)n Simple_repeat Simple_repeat 2 27 0 6 1134 414 0 0 0 chr5 71975732 71975778 -80561481 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 6 1134 332 356 126 14 chr5 71976016 71976238 -80561021 + MIRb SINE MIR 1 251 -17 6 1134 574 217 0 0 chr5 71977060 71977175 -80560084 + RMER1B Other Other 722 836 -230 6 1134 1585 174 29 0 chr5 71977177 71977379 -80559880 + L1_Mur3 LINE L1 2682 2889 -2988 6 1134 1149 118 0 0 chr5 71977379 71977557 -80559702 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 6 1134 1585 174 29 0 chr5 71977557 71977670 -80559589 + L1_Mur3 LINE L1 2890 3005 -2872 6 1134 695 216 30 0 chr5 71977666 71977833 -80559426 - L1_Mur3 LINE L1 -2704 3176 3005 6 1134 2163 204 37 16 chr5 71977842 71978354 -80558905 + Lx6 LINE L1 5689 6211 -1249 6 1134 3079 76 40 0 chr5 71978341 71978761 -80558498 - L1_Mus3 LINE L1 -455 6111 5675 6 1134 3414 73 9 0 chr5 71978761 71979212 -80558047 + L1_Mus3 LINE L1 6167 6621 -17 6 1134 198 0 0 0 chr5 71979212 71979234 -80558025 + (TAA)n Simple_repeat Simple_repeat 3 24 0 6 1134 504 265 30 22 chr5 71979239 71979374 -80557885 + Lx5 LINE L1 6228 6363 -687 6 1134 1404 300 91 45 chr5 71979371 71979908 -80557351 + Lx5 LINE L1 6479 7040 -10 6 1134 2918 169 54 27 chr5 71979941 71980641 -80556618 + L1_Mur3 LINE L1 2997 3715 -2165 6 1134 960 248 29 49 chr5 71980638 71980930 -80556329 + Lx5 LINE L1 6223 6753 -707 6 1134 459 0 0 0 chr5 71980930 71980981 -80556278 + (TAA)n Simple_repeat Simple_repeat 3 53 0 6 1134 1846 265 38 62 chr5 71980981 71981581 -80555678 + Lx5 LINE L1 6499 7032 -18 6 1134 197 77 0 49 chr5 71981637 71981678 -80555581 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 6 1134 192 259 58 107 chr5 71982305 71982426 -80554833 + L3 LINE CR1 1067 1181 -3308 6 1134 369 43 0 0 chr5 71982445 71982492 -80554767 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1134 304 103 35 0 chr5 71982492 71982549 -80554710 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1134 731 316 52 9 chr5 71982553 71982786 -80554473 - B4A SINE B4 -20 272 30 6 1134 2416 160 134 10 chr5 71982799 71983298 -80553961 - RMER4B LTR ERVK -10 575 15 6 1134 23 33 0 0 chr5 71983331 71983361 -80553898 + AT_rich Low_complexity Low_complexity 1 30 0 6 1134 224 267 67 0 chr5 71985210 71985270 -80551989 - PB1D9 SINE Alu 0 120 57 6 1134 3412 109 23 2 chr5 71985880 71986395 -80550864 + Lx2 LINE L1 6471 6996 -1 6 1134 363 295 38 9 chr5 71986427 71986533 -80550726 - B1F1 SINE Alu -34 115 7 6 1134 264 271 175 42 chr5 71987710 71987899 -80549360 + RMER4A LTR ERVK 17 230 -236 6 1134 793 84 8 0 chr5 71988169 71988288 -80548971 - MusHAL1 LINE L1 -1984 728 609 6 1134 7253 89 1 4 chr5 71988284 71989884 -80547375 + L1_Mus2 LINE L1 4970 6564 -2 6 1134 26 0 0 0 chr5 71989888 71989914 -80547345 + AT_rich Low_complexity Low_complexity 1 26 0 6 1134 459 0 0 0 chr5 71989930 71989981 -80547278 + (TAAAA)n Simple_repeat Simple_repeat 2 52 0 6 1134 420 122 14 0 chr5 71990183 71990257 -80547002 - Lx2 LINE L1 -1 6996 6922 6 1134 1581 161 39 0 chr5 71990261 71990541 -80546718 + Lx2 LINE L1 6380 6670 -327 6 1134 23 33 0 0 chr5 71990959 71990989 -80546270 + AT_rich Low_complexity Low_complexity 1 30 0 6 1134 432 0 0 0 chr5 71991823 71991871 -80545388 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1134 383 260 96 0 chr5 71991921 71992025 -80545234 - B3A SINE B2 -84 114 1 6 1134 459 286 93 30 chr5 71992027 71992359 -80544900 + L1MA9 LINE L1 5925 6277 -35 6 1134 1174 309 41 39 chr5 71992572 71992986 -80544273 + MTD LTR MaLR 1 415 -4 6 1134 233 298 0 45 chr5 71995958 71996046 -80541213 + GA-rich Low_complexity Low_complexity 2 85 0 6 1134 306 0 0 0 chr5 71997520 71997554 -80539705 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1134 485 263 16 51 chr5 72001397 72001537 -80535722 + MIR SINE MIR 21 163 -113 1 1134 184 299 73 57 chr5 72002075 72002199 -80535060 + MIRb SINE MIR 128 253 -15 2 1134 686 277 40 35 chr5 72002207 72002409 -80534850 + B3 SINE B2 2 204 -12 3 1134 248 343 33 47 chr5 72004179 72004329 -80532930 + B3A SINE B2 50 197 -1 4 1134 248 333 56 28 chr5 72005392 72005534 -80531725 + MIR SINE MIR 58 203 -59 5 1134 732 299 87 18 chr5 72005638 72005924 -80531335 + Lx8 LINE L1 7054 7359 -114 6 1134 294 29 0 0 chr5 72006147 72006182 -80531077 + (TA)n Simple_repeat Simple_repeat 2 36 0 7 1134 351 339 61 50 chr5 72006568 72006748 -80530511 - B3A SINE B2 -16 182 1 8 1134 2639 40 3 6 chr5 72007234 72007561 -80529698 + L1Md_F3 LINE L1 6242 6567 -17 9 1134 660 26 0 0 chr5 72008894 72008972 -80528287 + (GGGA)n Simple_repeat Simple_repeat 1 78 0 1 1134 21 36 0 0 chr5 72009223 72009251 -80528008 + AT_rich Low_complexity Low_complexity 1 28 0 1 1134 726 214 7 41 chr5 72009554 72009700 -80527559 + B1_Mus2 SINE Alu 7 147 0 1 1134 2039 91 56 109 chr5 72009885 72010148 -80527111 + RLTR28B LTR ERVL 32 313 -168 1 1134 961 72 64 14 chr5 72010148 72010288 -80526971 + B1_Mm SINE Alu 1 147 0 1 1134 2039 91 56 109 chr5 72010288 72010417 -80526842 + RLTR28B LTR ERVL 314 403 -78 1 1134 30 45 0 0 chr5 72011075 72011119 -80526140 + AT_rich Low_complexity Low_complexity 1 44 0 1 1134 1826 58 78 0 chr5 72011122 72011365 -80525894 - L1_Mus2 LINE L1 -2 6564 6303 1 1134 6126 82 13 4 chr5 72011584 72012423 -80524836 - L1_Mus3 LINE L1 -1 6637 5791 1 1134 1684 327 61 37 chr5 72012553 72012650 -80524609 + Lx8 LINE L1 6109 6211 -1262 1 1134 4949 52 46 3 chr5 72012650 72013312 -80523947 + L1Md_F2 LINE L1 5910 6582 0 1 1134 1684 327 61 37 chr5 72013312 72014230 -80523029 + Lx8 LINE L1 6212 7151 -322 1 1134 2670 156 49 23 chr5 72014374 72014887 -80522372 - RLTR31B_Mm LTR ERVK 0 557 32 2 1134 22 0 0 0 chr5 72015396 72015418 -80521841 + AT_rich Low_complexity Low_complexity 1 22 0 2 1134 813 19 0 0 chr5 72015709 72015817 -80521442 - L1Md_T LINE L1 0 6582 6475 2 1134 236 170 19 0 chr5 72017729 72017782 -80519477 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 2 1134 542 271 93 12 chr5 72017784 72017945 -80519314 - B3A SINE B2 -16 182 9 2 1134 821 136 40 0 chr5 72018237 72018362 -80518897 + B3 SINE B2 1 130 -86 2 1134 551 317 50 36 chr5 72020616 72020897 -80516362 - B4A SINE B4 -6 286 2 2 1134 1307 287 137 14 chr5 72021081 72021718 -80515541 - Lx8 LINE L1 -519 6954 6240 2 1134 203 130 93 0 chr5 72021780 72021834 -80515425 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 2 1134 486 0 0 0 chr5 72021835 72021889 -80515370 + (GA)n Simple_repeat Simple_repeat 2 55 0 2 1134 342 0 0 0 chr5 72021889 72021927 -80515332 + (GAAAA)n Simple_repeat Simple_repeat 1 38 0 3 1134 821 84 8 0 chr5 72021930 72022049 -80515210 + (GGAAA)n Simple_repeat Simple_repeat 5 124 0 3 1134 993 272 67 28 chr5 72022091 72022447 -80514812 + Lx8 LINE L1 7041 7410 -63 3 1134 21 0 0 0 chr5 72022494 72022515 -80514744 + AT_rich Low_complexity Low_complexity 1 21 0 3 1134 332 294 85 30 chr5 72023190 72023460 -80513799 + ORR1E LTR MaLR 43 359 -20 3 1134 2340 64 76 48 chr5 72023868 72024264 -80512995 + L1_Mus3 LINE L1 6232 6638 0 3 1134 194 62 0 30 chr5 72025252 72025285 -80511974 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1134 532 305 94 57 chr5 72025424 72025636 -80511623 - B4A SINE B4 -70 222 3 3 1134 1283 246 38 12 chr5 72026192 72026538 -80510721 + Lx9 LINE L1 7111 7465 -179 3 1134 460 56 28 0 chr5 72026543 72026615 -80510644 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 1134 290 278 34 64 chr5 72026943 72027147 -80510112 - L1MA10 LINE L1 -24 6310 6113 4 1134 320 324 37 0 chr5 72027745 72027881 -80509378 + B1F1 SINE Alu 2 142 -7 4 1134 522 309 139 34 chr5 72027898 72028193 -80509066 + MLT1A0 LTR MaLR 40 365 0 4 1134 538 272 142 12 chr5 72028780 72028855 -80508404 + B4 SINE B4 1 84 -208 4 1134 1106 118 0 11 chr5 72028855 72029035 -80508224 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 4 1134 538 272 142 12 chr5 72029035 72029212 -80508047 + B4 SINE B4 85 286 -6 4 1134 452 200 8 0 chr5 72029229 72029349 -80507910 + (CA)n Simple_repeat Simple_repeat 2 122 0 4 1134 294 296 122 76 chr5 72030061 72030233 -80507026 - L3b LINE CR1 -126 356 177 4 1134 528 16 0 0 chr5 72033777 72033838 -80503421 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1134 216 288 0 0 chr5 72034218 72034277 -80502982 + MIR SINE MIR 58 116 -146 4 1134 2151 73 10 10 chr5 72034505 72034796 -80502463 + L1Md_F2 LINE L1 6292 6582 0 4 1134 238 326 20 30 chr5 72035727 72035828 -80501431 - MER5A DNA MER1_type -24 165 66 5 1134 222 313 147 60 chr5 72036251 72036516 -80500743 - L2c LINE L2 -3 3384 3097 5 1134 817 282 25 21 chr5 72036813 72037052 -80500207 + MLT1B LTR MaLR 7 246 -144 5 1134 272 221 72 14 chr5 72037070 72037139 -80500120 + MLT1B LTR MaLR 287 359 -15 5 1134 189 372 66 0 chr5 72037287 72037424 -80499835 - L2c LINE L2 -569 2850 2705 5 1134 23 0 0 0 chr5 72038501 72038524 -80498735 + AT_rich Low_complexity Low_complexity 1 23 0 5 1134 441 190 0 0 chr5 72039285 72039385 -80497874 + CT-rich Low_complexity Low_complexity 1 100 0 5 1134 515 225 24 36 chr5 72039432 72039598 -80497661 + L1M5 LINE L1 5543 5706 -534 5 1134 231 61 0 0 chr5 72039618 72039651 -80497608 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1134 2186 114 3 58 chr5 72040497 72040842 -80496417 + ORR1A2 LTR MaLR 2 327 0 5 1134 2142 45 0 0 chr5 72041045 72041314 -80495945 - L1_Mus1 LINE L1 -702 5865 5597 5 1134 5001 71 18 0 chr5 72041314 72041974 -80495285 + L1_Mus1 LINE L1 5896 6567 0 5 1134 444 140 0 0 chr5 72042206 72042299 -80494960 + (TC)n Simple_repeat Simple_repeat 2 94 0 5 1134 206 344 208 37 chr5 72042300 72042351 -80494908 + L2a LINE L2 1904 1959 -1460 6 1134 348 24 0 0 chr5 72042351 72042392 -80494867 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1134 206 344 208 37 chr5 72042392 72043201 -80494058 + L2a LINE L2 1960 2911 -508 6 1134 185 313 261 11 chr5 72043329 72043513 -80493746 + L2a LINE L2 3105 3334 -92 6 1134 208 365 82 19 chr5 72043789 72043948 -80493311 + L2 LINE L2 2776 2944 -475 6 1134 269 55 0 18 chr5 72046092 72046148 -80491111 - L1Md_F2 LINE L1 0 6582 6528 6 1134 237 363 33 0 chr5 72047348 72047439 -80489820 + MIRb SINE MIR 121 214 -54 6 1134 202 196 35 35 chr5 72049711 72049769 -80487490 + (CGGGG)n Simple_repeat Simple_repeat 3 60 0 6 1134 359 254 112 35 chr5 72050083 72050226 -80487033 + HAL1-3A_ME LINE L1 2284 2437 -421 6 1134 231 36 0 0 chr5 72050229 72050257 -80487002 + (GGGA)n Simple_repeat Simple_repeat 4 31 0 6 1134 564 15 0 0 chr5 72050257 72050322 -80486937 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 6 1134 5204 92 37 1 chr5 72050939 72051671 -80485588 - Lx2 LINE L1 -2 6995 6238 6 1134 2828 57 74 13 chr5 72052347 72052724 -80484535 + MTB LTR MaLR 1 400 0 7 1134 539 224 178 13 chr5 72052861 72053134 -80484125 - ORR1D2 LTR MaLR -28 342 1 7 1134 198 80 19 39 chr5 72054411 72054463 -80482796 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 7 1134 260 278 0 0 chr5 72054734 72054788 -80482471 - MLT1G LTR MaLR -316 275 222 7 1134 280 245 45 45 chr5 72055044 72055155 -80482104 + MLT2D LTR ERVL 1 111 -303 7 1134 272 167 0 0 chr5 72055157 72055199 -80482060 + 5S rRNA rRNA 2 43 -78 7 1134 340 305 72 48 chr5 72055196 72055343 -80481916 + MLT2D LTR ERVL 97 246 -218 7 1134 402 290 72 7 chr5 72055415 72055554 -80481705 - B1_Mur1 SINE Alu 0 149 2 7 1134 570 295 75 21 chr5 72055584 72055771 -80481488 + B3A SINE B2 1 197 -1 7 1134 553 201 245 7 chr5 72056306 72056461 -80480798 + B3A SINE B2 1 192 -6 7 1134 708 12 0 0 chr5 72056789 72056870 -80480389 + (TC)n Simple_repeat Simple_repeat 1 81 0 7 1134 331 291 13 0 chr5 72058006 72058085 -80479174 - B1F1 SINE Alu -69 80 1 8 1134 493 346 0 58 chr5 72058110 72058282 -80478977 + RSINE1 SINE B4 4 165 0 8 1134 826 275 83 11 chr5 72058448 72058724 -80478535 + Lx8 LINE L1 6386 6681 -792 8 1134 189 0 0 0 chr5 72059044 72059065 -80478194 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 8 1134 693 225 16 38 chr5 72059070 72059255 -80478004 - Lx4B LINE L1 -10 7048 6868 8 1134 368 269 66 74 chr5 72060234 72060456 -80476803 - MTEa LTR MaLR -18 382 116 8 1134 352 291 56 46 chr5 72060470 72060686 -80476573 - RMER15 LTR ERVL -14 561 344 8 1134 3729 106 34 3 chr5 72060844 72061411 -80475848 - MT2B2 LTR ERVL 0 584 1 8 1134 415 313 65 21 chr5 72061775 72062114 -80475145 + L1M5 LINE L1 2497 2850 -3296 8 1134 423 0 0 0 chr5 72062228 72062275 -80474984 + (TA)n Simple_repeat Simple_repeat 1 47 0 8 1134 261 0 0 0 chr5 72062553 72062582 -80474677 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9 1134 222 284 12 86 chr5 72062598 72062679 -80474580 + PB1D10 SINE Alu 2 76 -41 9 1134 558 278 0 57 chr5 72062608 72062749 -80474510 + ID_B1 SINE B4 90 222 -2 9 1134 243 0 0 0 chr5 72062863 72062890 -80474369 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1134 423 0 0 0 chr5 72062890 72062936 -80474323 + (GA)n Simple_repeat Simple_repeat 2 48 0 9 1134 721 192 96 5 chr5 72063125 72063324 -80473935 - Lx9 LINE L1 -1 7643 7427 9 1134 432 0 0 0 chr5 72063464 72063512 -80473747 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 9 1134 348 229 0 52 chr5 72063530 72063629 -80473630 + B1F SINE Alu 17 105 -12 9 1134 1336 56 32 0 chr5 72065139 72065392 -80471867 + (TCTA)n Simple_repeat Simple_repeat 1 261 0 9 1134 473 297 138 0 chr5 72065426 72065564 -80471695 - B3A SINE B2 -24 174 18 9 1134 396 306 0 9 chr5 72065660 72065769 -80471490 + PB1D10 SINE Alu 10 117 0 1 1134 12587 42 5 3 chr5 72065933 72067208 -80470051 - L1Md_F3 LINE L1 0 6584 5306 1 1134 2077 48 15 4 chr5 72067208 72067479 -80469780 - L1Md_F2 LINE L1 0 6582 6309 1 1134 12587 56 3 3 chr5 72067479 72068503 -80468756 - L1Md_F3 LINE L1 -578 5305 4284 1 1134 1600 221 129 0 chr5 72068675 72069046 -80468213 - MTD LTR MaLR 0 419 1 1 1134 453 62 0 0 chr5 72069509 72069574 -80467685 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1134 423 0 0 0 chr5 72069578 72069625 -80467634 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 1 1134 287 157 14 0 chr5 72069626 72069696 -80467563 + (CATA)n Simple_repeat Simple_repeat 2 72 0 1 1134 291 324 70 28 chr5 72070418 72070561 -80466698 + MIRb SINE MIR 118 266 -2 1 1134 441 78 39 13 chr5 72071647 72071725 -80465534 - L1_Mus2 LINE L1 -1 6565 6486 1 1134 1909 320 94 29 chr5 72071794 72072025 -80465234 - Lx8 LINE L1 -148 7325 7093 1 1134 1312 166 9 0 chr5 72072025 72072248 -80465011 + URR1B DNA MER1_type 1 225 0 1 1134 1909 320 94 29 chr5 72072248 72072916 -80464343 - Lx8 LINE L1 -381 7092 6367 1 1134 2019 96 0 0 chr5 72072905 72073176 -80464083 - Lx LINE L1 -411 6243 5973 1 1134 27 0 0 0 chr5 72073282 72073309 -80463950 + AT_rich Low_complexity Low_complexity 1 27 0 1 1134 888 85 0 0 chr5 72073788 72073837 -80463422 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1134 1110 117 0 0 chr5 72073837 72074016 -80463243 + (CATA)n Simple_repeat Simple_repeat 2 180 0 1 1134 888 85 0 0 chr5 72074016 72074095 -80463164 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1134 453 36 0 0 chr5 72075016 72075071 -80462188 + (TTG)n Simple_repeat Simple_repeat 2 56 0 1 1134 274 314 133 67 chr5 72075334 72075484 -80461775 - MER21B LTR ERV1 -115 748 589 1 1134 7749 70 10 6 chr5 72075490 72077070 -80460189 - L1_Mus1 LINE L1 0 6567 4982 1 1134 887 374 61 21 chr5 72077087 72077614 -80459645 - MER21B LTR ERV1 -266 597 50 1 1134 222 289 39 26 chr5 72078434 72078512 -80458747 - ID4 SINE ID -4 79 1 1 1134 582 257 14 0 chr5 72078619 72078767 -80458492 - Lx5 LINE L1 -7 7043 6894 1 1134 200 278 0 0 chr5 72079233 72079287 -80457972 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1134 260 239 97 14 chr5 72079332 72079404 -80457855 - BC1_Mm scRNA scRNA -73 79 2 1 1134 303 366 52 15 chr5 72079422 72079558 -80457701 - B1F1 SINE Alu -8 141 1 1 1134 1144 131 6 6 chr5 72079623 72079799 -80457460 - L1_Mur2 LINE L1 -198 5679 5504 1 1134 238 0 32 0 chr5 72080326 72080357 -80456902 - Lx2B LINE L1 -336 6664 6633 1 1134 1376 163 77 59 chr5 72080334 72080714 -80456545 + Lx2B LINE L1 6642 6997 0 1 1134 6295 111 76 18 chr5 72080843 72082202 -80455057 - L1_Mus4 LINE L1 -6 6630 5215 1 1134 1148 63 0 0 chr5 72082202 72082360 -80454899 + L1Md_A LINE L1 6425 6582 0 1 1134 4225 145 56 11 chr5 72082360 72082454 -80454805 - L1_Mus4 LINE L1 -669 5214 5121 1 1134 7027 128 8 37 chr5 72082452 72083644 -80453615 + L1_Mus4 LINE L1 3960 5117 -766 1 1134 468 0 0 0 chr5 72083681 72083733 -80453526 + (TTG)n Simple_repeat Simple_repeat 2 53 0 1 1134 202 329 50 12 chr5 72083899 72083979 -80453280 + MIR SINE MIR 166 248 -14 1 1134 610 323 140 20 chr5 72084280 72084779 -80452480 - HAL1 LINE L1 -843 1664 1106 1 1134 304 215 24 48 chr5 72084779 72084862 -80452397 + CT-rich Low_complexity Low_complexity 2 82 0 1 1134 405 181 42 21 chr5 72086200 72086296 -80450963 - B2_Mm2 SINE B2 -13 182 85 1 1134 1005 106 7 0 chr5 72086297 72086438 -80450821 + B1_Mm SINE Alu 1 142 -5 1 1134 1097 116 6 0 chr5 72086475 72086648 -80450611 + (GGAGAA)n Simple_repeat Simple_repeat 3 176 0 1 1134 459 153 118 0 chr5 72086660 72086745 -80450514 - B2_Mm2 SINE B2 -100 95 1 1 1134 2858 78 13 1 chr5 72087059 72087541 -80449718 - L1_Mus1 LINE L1 -876 6121 5646 1 1134 241 140 0 34 chr5 72087657 72087716 -80449543 + CT-rich Low_complexity Low_complexity 2 58 0 1 1134 232 367 91 10 chr5 72088922 72089021 -80448238 + L2b LINE L2 3269 3375 0 1 1135 186 43 0 0 chr5 72089991 72090014 -80447245 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1135 303 203 0 0 chr5 72090851 72090915 -80446344 + A-rich Low_complexity Low_complexity 1 64 0 1 1135 443 18 18 0 chr5 72091742 72091798 -80445461 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1135 426 175 0 0 chr5 72092911 72092991 -80444268 + CT-rich Low_complexity Low_complexity 1 80 0 1 1135 476 32 16 0 chr5 72095265 72095327 -80441932 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1135 258 81 0 0 chr5 72095532 72095569 -80441690 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1135 284 289 83 51 chr5 72096201 72096358 -80440901 - MER5A1 DNA MER1_type -4 162 1 1 1135 522 271 114 50 chr5 72097305 72097507 -80439752 + ID_B1 SINE B4 2 216 -8 1 1135 216 97 0 0 chr5 72098172 72098203 -80439056 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1135 765 190 30 6 chr5 72098360 72098524 -80438735 - URR1A DNA MER1_type 0 226 59 1 1135 549 150 0 0 chr5 72099462 72099562 -80437697 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 1 1135 876 81 20 0 chr5 72100050 72100198 -80437061 + (GA)n Simple_repeat Simple_repeat 2 152 0 1 1135 468 0 0 0 chr5 72102376 72102428 -80434831 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 1 1135 3301 80 20 2 chr5 72103762 72104203 -80433056 - L1_Mus1 LINE L1 -1 6566 6118 1 1135 338 253 12 12 chr5 72104273 72104353 -80432906 - ID4_ SINE ID -2 81 2 1 1135 4104 105 108 0 chr5 72104822 72105453 -80431806 - Lx3_Mus LINE L1 -8 7001 6303 1 1135 293 319 34 8 chr5 72105704 72105821 -80431438 - MER94 DNA AcHobo 0 134 15 1 1135 306 331 142 0 chr5 72106114 72106283 -80430976 - MLT1A0 LTR MaLR -163 202 10 1 1135 192 316 18 0 chr5 72106307 72106364 -80430895 - MIRb SINE MIR -10 258 201 1 1135 181 258 61 129 chr5 72107708 72107855 -80429404 - MIRb SINE MIR -69 199 63 1 1135 230 306 92 44 chr5 72109012 72109241 -80428018 - L5 LINE RTE -9 2256 2017 1 1135 630 117 0 0 chr5 72109291 72109402 -80427857 + (TC)n Simple_repeat Simple_repeat 2 112 0 1 1135 234 0 0 0 chr5 72109404 72109430 -80427829 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1135 1404 113 70 1 chr5 72110391 72110647 -80426612 + MTB LTR MaLR 125 399 -1 1 1135 1058 289 51 16 chr5 72110797 72111168 -80426091 - MTD LTR MaLR -12 395 1 1 1135 293 406 36 69 chr5 72112097 72112401 -80424858 - LTR16A LTR ERVL -127 324 31 1 1135 217 328 0 47 chr5 72112509 72112573 -80424686 + L2c LINE L2 3261 3321 -66 1 1135 713 137 79 7 chr5 72112611 72112751 -80424508 + Lx2 LINE L1 6846 6995 -2 1 1135 684 307 32 5 chr5 72112772 72112988 -80424271 + ID_B1 SINE B4 3 224 0 1 1135 549 125 0 0 chr5 72113756 72113844 -80423415 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 1135 207 0 0 0 chr5 72114147 72114170 -80423089 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1135 1611 107 137 0 chr5 72114514 72114785 -80422474 - Lx LINE L1 -6 6648 6341 1 1135 320 219 0 20 chr5 72114876 72114974 -80422285 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 1 1135 285 51 0 0 chr5 72115258 72115297 -80421962 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1135 2403 70 12 0 chr5 72115650 72115978 -80421281 - L1_Mm LINE L1 -631 5252 4921 1 1135 2711 70 8 34 chr5 72115978 72116364 -80420895 + L1_Mus2 LINE L1 6190 6565 -1 1 1135 1284 270 23 17 chr5 72116737 72117088 -80420171 + Lx6 LINE L1 7103 7455 -5 1 1135 308 127 18 0 chr5 72117653 72117708 -80419551 + (TTA)n Simple_repeat Simple_repeat 3 58 0 1 1135 443 18 0 18 chr5 72118656 72118713 -80418546 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1 1135 1474 67 0 20 chr5 72119790 72119987 -80417272 + B2_Mm2 SINE B2 3 195 0 1 1135 216 0 0 0 chr5 72119987 72120011 -80417248 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1135 225 0 0 0 chr5 72120407 72120432 -80416827 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1135 21 0 0 0 chr5 72121982 72122003 -80415256 + AT_rich Low_complexity Low_complexity 1 21 0 1 1135 1043 119 50 22 chr5 72122204 72122384 -80414875 - B2_Mm2 SINE B2 -8 187 3 1 1135 509 202 0 11 chr5 72122680 72122775 -80414484 - B1_Mus1 SINE Alu -43 105 12 1 1135 372 324 49 0 chr5 72122684 72122786 -80414473 - B4 SINE B4 -101 191 85 1 1135 294 386 98 4 chr5 72123008 72123242 -80414017 + L2c LINE L2 2700 2955 -464 1 1135 388 307 112 45 chr5 72123547 72123834 -80413425 - Arthur1B DNA Tip100 -851 374 69 1 1135 194 316 139 57 chr5 72123925 72124083 -80413176 + L2c LINE L2 3217 3387 0 1 1135 254 29 29 0 chr5 72126023 72126058 -80411201 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1135 623 13 13 0 chr5 72126058 72126133 -80411126 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 1135 182 192 19 0 chr5 72126189 72126241 -80411018 + CT-rich Low_complexity Low_complexity 4 56 0 1 1135 298 61 41 0 chr5 72126234 72126283 -80410976 + (TCC)n Simple_repeat Simple_repeat 1 51 0 1 1135 217 326 48 36 chr5 72126283 72126319 -80410940 + L2a LINE L2 1816 1851 -1568 1 1135 216 86 0 0 chr5 72126319 72126354 -80410905 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1135 217 326 48 36 chr5 72126354 72126568 -80410691 + L2a LINE L2 1852 2069 -1350 1 1135 409 357 18 49 chr5 72127108 72127394 -80409865 + L2a LINE L2 3145 3421 -5 1 1135 5506 66 3 4 chr5 72128710 72129422 -80407837 + L1_Mus1 LINE L1 5857 6567 0 1 1135 2760 211 38 16 chr5 72129779 72130409 -80406850 - Lx9 LINE L1 -188 7456 6813 1 1135 1019 269 67 96 chr5 72130507 72130894 -80406365 + MTEa LTR MaLR 4 379 0 1 1135 186 206 0 0 chr5 72131536 72131570 -80405689 + L2 LINE L2 1495 1528 -1891 1 1135 716 22 11 0 chr5 72131658 72131748 -80405511 + (TAGA)n Simple_repeat Simple_repeat 3 93 0 1 1135 201 200 20 0 chr5 72131750 72131800 -80405459 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1135 189 121 0 0 chr5 72131800 72131833 -80405426 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 1 1135 383 0 21 0 chr5 72131848 72131895 -80405364 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1135 297 0 0 0 chr5 72131895 72131927 -80405332 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1135 1350 53 0 0 chr5 72132541 72132712 -80404547 + (TTCTCC)n Simple_repeat Simple_repeat 2 172 0 2 1135 2662 124 35 37 chr5 72132731 72133190 -80404069 - Lx LINE L1 -6 6648 6191 2 1135 243 0 0 0 chr5 72133652 72133679 -80403580 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1135 227 345 190 24 chr5 72133883 72134088 -80403171 + LTR16A1 LTR ERVL 58 296 -160 2 1135 187 122 41 0 chr5 72134443 72134492 -80402767 + T-rich Low_complexity Low_complexity 4 54 0 2 1135 442 361 97 18 chr5 72134759 72134906 -80402353 + Lx8 LINE L1 6840 7006 -467 2 1135 339 44 0 0 chr5 72134906 72134951 -80402308 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2 1135 442 361 97 18 chr5 72134951 72135133 -80402126 + Lx8 LINE L1 7007 7194 -279 2 1135 301 310 97 0 chr5 72135462 72135575 -80401684 + Lx8 LINE L1 6616 6739 -734 2 1135 351 96 0 0 chr5 72138130 72138182 -80399077 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1135 204 346 64 18 chr5 72138182 72138291 -80398968 + MIRc SINE MIR 104 217 -51 2 1135 706 328 83 50 chr5 72138340 72138844 -80398415 - MER113 DNA MER1_type 0 521 1 2 1135 1948 180 46 8 chr5 72142476 72142846 -80394413 - RMER6B LTR ERVK -2 459 76 2 1135 390 87 0 0 chr5 72142903 72142972 -80394287 + L1_Mus3 LINE L1 6570 6638 0 2 1135 459 0 0 0 chr5 72146760 72146811 -80390448 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1135 215 233 0 0 chr5 72146811 72146854 -80390405 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1135 279 0 0 0 chr5 72147399 72147430 -80389829 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1135 536 120 0 0 chr5 72148956 72149048 -80388211 - L1_Mus3 LINE L1 -7 6631 6540 2 1135 2837 132 63 33 chr5 72149108 72149618 -80387641 - Lx4A LINE L1 -3 7055 6531 2 1135 468 0 0 0 chr5 72149759 72149811 -80387448 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1135 279 0 0 0 chr5 72150143 72150174 -80387085 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2 1135 744 265 27 11 chr5 72150378 72150565 -80386694 + B3A SINE B2 8 197 -1 2 1135 771 185 20 0 chr5 72150735 72150881 -80386378 - B1_Mur4 SINE Alu 0 150 2 2 1135 387 141 0 0 chr5 72151763 72151827 -80385432 + (CAA)n Simple_repeat Simple_repeat 3 66 0 2 1135 303 28 0 0 chr5 72151823 72151859 -80385400 + (ATG)n Simple_repeat Simple_repeat 1 36 0 2 1135 304 291 0 0 chr5 72153198 72153277 -80383982 - Lx9 LINE L1 -319 7325 7247 2 1135 2203 298 36 73 chr5 72153295 72153649 -80383610 + Lx9 LINE L1 6068 6385 -1259 2 1135 477 0 0 0 chr5 72153649 72153702 -80383557 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1135 2203 298 36 73 chr5 72153702 72154476 -80382783 + Lx9 LINE L1 6386 7155 -489 2 1135 726 286 11 0 chr5 72154586 72154761 -80382498 + MERVL_2A-int LTR ERVL 2077 2253 -3508 2 1135 387 171 0 0 chr5 72154764 72154840 -80382419 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 1135 2282 221 44 15 chr5 72154863 72155386 -80381873 + MERVL_2A-int LTR ERVL 2263 2800 -2961 2 1135 397 161 60 24 chr5 72155594 72155677 -80381582 - MERVL-int LTR ERVL -3426 2059 1974 2 1135 1613 237 50 10 chr5 72155699 72156100 -80381159 - RMER1C Other Other -2 1340 924 2 1135 2809 67 2 49 chr5 72156443 72156849 -80380410 + L1_Mus2 LINE L1 6180 6566 0 2 1135 383 286 69 66 chr5 72157479 72157680 -80379579 - MTEb LTR MaLR -114 265 1 2 1135 197 270 88 75 chr5 72157773 72157853 -80379406 + L4 LINE RTE 630 710 -1319 2 1135 218 325 0 102 chr5 72157829 72157956 -80379303 - L3 LINE CR1 -165 4324 4211 2 1135 189 0 0 0 chr5 72158187 72158208 -80379051 + (GA)n Simple_repeat Simple_repeat 2 22 0 2 1135 28 29 0 0 chr5 72159104 72159139 -80378120 + AT_rich Low_complexity Low_complexity 1 35 0 2 1135 243 158 0 50 chr5 72159490 72159550 -80377709 + CT-rich Low_complexity Low_complexity 1 57 0 2 1135 360 0 0 0 chr5 72159803 72159843 -80377416 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 2 1135 2675 44 9 0 chr5 72160812 72161150 -80376109 - L1Md_F3 LINE L1 -1 6583 6243 2 1135 250 306 41 0 chr5 72161193 72161291 -80375968 - L1MEf LINE L1 -4872 2256 2155 2 1135 390 332 46 73 chr5 72161445 72161663 -80375596 - L1MEf LINE L1 -5015 2022 1811 2 1135 1283 253 99 13 chr5 72161678 72162051 -80375208 + MTD LTR MaLR 1 405 -14 2 1135 582 60 0 0 chr5 72162834 72162917 -80374342 + (TG)n Simple_repeat Simple_repeat 1 83 0 2 1135 1730 199 61 15 chr5 72162938 72163345 -80373914 - Lx4B LINE L1 0 7058 6633 2 1135 308 24 24 0 chr5 72163571 72163612 -80373647 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1135 186 167 0 0 chr5 72163940 72163976 -80373283 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1135 313 257 38 32 chr5 72164076 72164233 -80373026 - L1MEf LINE L1 -6239 184 27 2 1135 679 146 0 28 chr5 72164697 72164838 -80372421 + CT-rich Low_complexity Low_complexity 2 138 0 2 1135 316 369 61 11 chr5 72165521 72165702 -80371557 + MIR SINE MIR 67 256 -6 2 1135 1316 77 22 0 chr5 72166290 72166472 -80370787 + B2_Mm1t SINE B2 3 188 -5 2 1135 1171 57 0 0 chr5 72166478 72166619 -80370640 + B1_Mm SINE Alu 1 141 -6 2 1135 447 216 26 0 chr5 72166963 72167079 -80370180 - Lx9 LINE L1 -10 7634 7516 2 1135 345 213 68 38 chr5 72168208 72168340 -80368919 + Lx7 LINE L1 7559 7694 -2 2 1135 364 274 78 17 chr5 72170136 72170251 -80367008 - L2a LINE L2 0 3426 3305 2 1135 21 36 0 0 chr5 72170298 72170326 -80366933 + AT_rich Low_complexity Low_complexity 1 28 0 2 1135 3066 311 57 11 chr5 72172589 72173721 -80363538 + Lx8 LINE L1 6247 7429 -44 2 1135 25 31 0 0 chr5 72174264 72174296 -80362963 + AT_rich Low_complexity Low_complexity 1 32 0 2 1135 1017 171 84 15 chr5 72174361 72174563 -80362696 + Lx4A LINE L1 6824 7039 -19 2 1135 551 257 7 59 chr5 72175095 72175248 -80362011 - B3A SINE B2 -16 182 38 2 1135 216 0 0 0 chr5 72175389 72175413 -80361846 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1135 7209 225 35 83 chr5 72175603 72176148 -80361111 - Lx6 LINE L1 -12 7448 6897 2 1135 450 0 0 0 chr5 72176148 72176198 -80361061 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1135 243 0 0 0 chr5 72176198 72176224 -80361035 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1135 9558 213 42 64 chr5 72176224 72177969 -80359290 - Lx6 LINE L1 -564 6896 5261 2 1135 191 36 0 35 chr5 72177969 72177998 -80359261 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1135 9558 184 57 19 chr5 72177998 72178418 -80358841 - Lx6 LINE L1 -620 5260 4808 2 1135 3022 83 0 5 chr5 72178418 72178816 -80358443 + MTA_Mm LTR MaLR 1 396 0 2 1135 7216 86 12 69 chr5 72178816 72179980 -80357279 + MTA_Mm-int LTR MaLR 1 1098 0 2 1135 2951 73 29 3 chr5 72179980 72180364 -80356895 + MTA_Mm LTR MaLR 1 394 -2 2 1135 9558 184 57 19 chr5 72180364 72181482 -80355777 - Lx6 LINE L1 -1073 4807 3642 2 1135 2837 193 50 17 chr5 72181478 72182482 -80354777 - Lx6 LINE L1 -3980 1900 859 2 1135 1383 320 40 24 chr5 72182476 72183251 -80354008 - Lx6 LINE L1 -7029 699 17 2 1135 1837 100 36 0 chr5 72183251 72183531 -80353728 - Lx LINE L1 -4 6650 6361 2 1135 1132 328 42 49 chr5 72183531 72183706 -80353553 - Lx6 LINE L1 -7446 282 93 2 1135 247 372 11 0 chr5 72185008 72185102 -80352157 - PB1D10 SINE Alu -7 110 16 2 1135 184 328 47 0 chr5 72185204 72185268 -80351991 + L2c LINE L2 3287 3353 -34 2 1135 276 266 161 0 chr5 72185726 72185850 -80351409 + L1MA5 LINE L1 6043 6186 -114 2 1135 651 267 94 35 chr5 72186134 72186476 -80350783 + L1MA6 LINE L1 5876 6237 -63 2 1135 246 32 0 0 chr5 72186485 72186516 -80350743 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1135 432 276 18 45 chr5 72186535 72186645 -80350614 + PB1D10 SINE Alu 3 109 -8 2 1135 303 344 112 50 chr5 72186712 72187177 -80350082 + L1M5 LINE L1 4712 5205 -941 2 1135 225 236 18 0 chr5 72187227 72187282 -80349977 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 1135 379 266 21 11 chr5 72187914 72188009 -80349250 + RSINE1 SINE B4 67 162 -3 2 1135 24 53 0 0 chr5 72188108 72188146 -80349113 + AT_rich Low_complexity Low_complexity 1 38 0 2 1135 1307 232 149 3 chr5 72188676 72189031 -80348228 + MTD LTR MaLR 5 411 -8 2 1135 315 242 198 22 chr5 72189194 72189376 -80347883 - LTR50 LTR ERVL -2 793 580 2 1135 617 280 126 23 chr5 72190387 72190825 -80346434 + L1MB2 LINE L1 4672 5154 -986 2 1135 528 56 0 0 chr5 72190847 72190919 -80346340 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 1135 378 0 0 0 chr5 72190949 72190991 -80346268 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1135 884 287 82 18 chr5 72191009 72191918 -80345341 + L1MB2 LINE L1 5314 6312 0 2 1135 25 0 0 0 chr5 72192244 72192269 -80344990 + AT_rich Low_complexity Low_complexity 1 25 0 2 1135 24 0 0 0 chr5 72192665 72192689 -80344570 + AT_rich Low_complexity Low_complexity 1 24 0 2 1135 6371 102 71 37 chr5 72192692 72193506 -80343753 - L1_Mus3 LINE L1 -8 6630 5780 2 1135 351 0 0 0 chr5 72193506 72193545 -80343714 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2 1135 6371 112 28 45 chr5 72193545 72194115 -80343144 - L1_Mus3 LINE L1 -104 5779 5207 2 1135 405 0 0 0 chr5 72194586 72194631 -80342628 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1135 330 292 48 0 chr5 72194891 72195038 -80342221 + L1MD LINE L1 2930 3083 -3063 2 1135 183 129 0 0 chr5 72195342 72195373 -80341886 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1135 238 291 18 9 chr5 72195860 72195971 -80341288 + (TA)n Simple_repeat Simple_repeat 2 113 0 2 1135 332 216 35 113 chr5 72196016 72196131 -80341128 + MT2B LTR ERVL 152 257 -344 2 1135 780 154 22 0 chr5 72196039 72196175 -80341084 + B1_Mus2 SINE Alu 9 147 0 2 1135 21 57 0 0 chr5 72197063 72197098 -80340161 + AT_rich Low_complexity Low_complexity 1 35 0 2 1135 279 338 81 54 chr5 72197915 72198212 -80339047 + L2a LINE L2 3084 3388 -38 2 1135 523 237 26 0 chr5 72198744 72198858 -80338401 + B3 SINE B2 14 130 -86 2 1135 246 95 0 0 chr5 72199151 72199193 -80338066 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 2 1135 513 248 8 30 chr5 72199199 72199332 -80337927 - ID_B1 SINE B4 -9 215 86 2 1135 1771 107 14 14 chr5 72199685 72199969 -80337290 - Lx2A1 LINE L1 -4 7004 6721 2 1135 255 322 112 15 chr5 72200003 72200262 -80336997 + L1MB8 LINE L1 5822 6105 -73 2 1135 847 330 98 19 chr5 72200661 72201280 -80335979 - L1MC4 LINE L1 -148 7894 7227 2 1135 3226 154 39 25 chr5 72201301 72202100 -80335159 - RLTR13D2 LTR ERVK 0 1023 3 2 1135 493 316 0 0 chr5 72202626 72202784 -80334475 + L1_Mur3 LINE L1 366 523 -7189 3 1135 275 204 0 18 chr5 72202803 72202858 -80334401 - RMER12 LTR ERVK 0 1322 1269 3 1135 723 80 0 0 chr5 72202884 72202996 -80334263 + (TGGA)n Simple_repeat Simple_repeat 4 115 0 3 1135 3130 198 44 22 chr5 72203020 72203752 -80333507 - RMER12 LTR ERVK -574 748 1 3 1135 387 343 83 88 chr5 72203765 72204145 -80333114 + Lx8 LINE L1 22 367 -7361 3 1135 519 17 0 0 chr5 72204145 72204205 -80333054 + (TC)n Simple_repeat Simple_repeat 2 61 0 3 1135 737 302 142 18 chr5 72204205 72204771 -80332488 + Lx8 LINE L1 17 667 -7061 3 1135 960 211 44 24 chr5 72204804 72205056 -80332203 + Lx8 LINE L1 861 1117 -6611 3 1135 7093 186 57 28 chr5 72205053 72205212 -80332047 + Lx8 LINE L1 4249 4423 -1457 3 1135 198 0 0 0 chr5 72205212 72205234 -80332025 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1135 7093 186 57 28 chr5 72205234 72206655 -80330604 + Lx8 LINE L1 4424 5874 -6 3 1135 1406 264 38 27 chr5 72206995 72207519 -80329740 + Lx7 LINE L1 7181 7693 -3 3 1135 1354 295 48 29 chr5 72208271 72208749 -80328510 + Lx8 LINE L1 6190 6676 -797 3 1135 260 83 26 53 chr5 72208764 72208840 -80328419 + T-rich Low_complexity Low_complexity 4 77 0 3 1135 2391 195 163 58 chr5 72208943 72208999 -80328260 + RMER1B Other Other 353 417 -649 3 1135 378 0 0 0 chr5 72208999 72209041 -80328218 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1135 2391 195 163 58 chr5 72209041 72209477 -80327782 + RMER1B Other Other 418 918 -148 3 1135 294 50 0 0 chr5 72209477 72209517 -80327742 + (TTG)n Simple_repeat Simple_repeat 3 42 0 3 1135 2391 195 163 58 chr5 72209517 72209666 -80327593 + RMER1B Other Other 919 1062 -4 3 1135 9210 49 2 1 chr5 72209682 72210827 -80326432 + L1Md_F3 LINE L1 4441 5586 -297 3 1135 8379 25 6 10 chr5 72210827 72211368 -80325891 + L1Md_F3 LINE L1 5587 6131 -453 3 1135 2746 28 0 49 chr5 72211368 72211712 -80325547 - IAPLTR2b LTR ERVK 0 327 1 3 1135 8379 25 6 10 chr5 72211712 72212172 -80325087 + L1Md_F3 LINE L1 6132 6584 0 3 1135 846 181 7 0 chr5 72212198 72212342 -80324917 + ORR1C1 LTR MaLR 13 157 -221 3 1135 980 47 16 0 chr5 72212343 72212472 -80324787 + (TCTCCC)n Simple_repeat Simple_repeat 6 136 0 3 1135 279 257 13 13 chr5 72212530 72212605 -80324654 + ORR1C1 LTR MaLR 310 384 0 3 1135 600 368 138 18 chr5 72212606 72213157 -80324102 + Lx8 LINE L1 6698 7314 -159 3 1135 1103 211 9 9 chr5 72213807 72214032 -80323227 - URR1B DNA MER1_type 0 225 1 3 1135 348 148 0 0 chr5 72214515 72214569 -80322690 + HAL1-3A_ME LINE L1 1965 2018 -840 3 1135 264 218 0 0 chr5 72214582 72214669 -80322590 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1135 669 210 6 0 chr5 72214690 72215024 -80322235 + (CA)n Simple_repeat Simple_repeat 1 336 0 3 1135 226 313 172 38 chr5 72215737 72215946 -80321313 - MLT1C LTR MaLR -46 421 185 3 1135 279 79 0 0 chr5 72215986 72216024 -80321235 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1135 245 261 63 63 chr5 72216268 72216383 -80320876 + L1MA10 LINE L1 6056 6170 -164 3 1135 627 81 0 0 chr5 72216383 72216469 -80320790 + (GGGA)n Simple_repeat Simple_repeat 3 88 0 3 1135 245 261 63 63 chr5 72216469 72216496 -80320763 + L1MA10 LINE L1 6171 6197 -137 3 1135 30 83 0 0 chr5 72217115 72217187 -80320072 + AT_rich Low_complexity Low_complexity 1 72 0 3 1135 1127 88 0 0 chr5 72217200 72217348 -80319911 - B1_Mus1 SINE Alu 0 148 1 3 1135 190 244 42 55 chr5 72218898 72218979 -80318280 - MIRm SINE MIR -6 270 184 3 1136 423 0 0 0 chr5 72220808 72220855 -80316404 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1136 213 313 0 15 chr5 72220961 72221029 -80316230 + CT-rich Low_complexity Low_complexity 4 70 0 3 1136 23 0 0 0 chr5 72221309 72221332 -80315927 + AT_rich Low_complexity Low_complexity 1 23 0 3 1136 330 363 53 53 chr5 72221447 72221578 -80315681 - B3A SINE B2 -20 178 48 3 1136 35346 35 0 0 chr5 72223076 72228731 -80308528 + L1Md_T LINE L1 1 5589 -297 3 1136 8930 7 0 0 chr5 72228731 72229746 -80307513 + L1Md_T LINE L1 5590 6585 0 3 1136 510 83 0 0 chr5 72229936 72230008 -80307251 + (TCCCC)n Simple_repeat Simple_repeat 4 75 0 3 1136 608 111 10 0 chr5 72230025 72230124 -80307135 + (TC)n Simple_repeat Simple_repeat 1 100 0 3 1136 372 280 0 74 chr5 72230124 72230232 -80307027 - B1_Mur1 SINE Alu -14 135 36 3 1136 527 66 0 32 chr5 72230525 72230619 -80306640 + L1Md_F3 LINE L1 6492 6582 -2 3 1136 865 173 53 7 chr5 72230628 72230779 -80306480 + Lx5 LINE L1 6151 6308 -742 3 1136 315 0 0 0 chr5 72230779 72230814 -80306445 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1136 191 360 108 39 chr5 72230918 72231149 -80306110 + MIRb SINE MIR 22 268 0 3 1136 381 43 0 0 chr5 72231566 72231613 -80305646 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1136 2320 215 40 62 chr5 72231635 72232186 -80305073 - Lx5 LINE L1 0 7050 6512 3 1136 1524 158 37 0 chr5 72232183 72232456 -80304803 - Lx5 LINE L1 -1053 5997 5715 3 1136 4420 157 14 3 chr5 72232457 72233193 -80304066 + Lx5 LINE L1 4905 5648 -229 3 1136 210 224 0 0 chr5 72233276 72233325 -80303934 + GA-rich Low_complexity Low_complexity 3 51 0 3 1136 567 43 0 0 chr5 72233325 72233395 -80303864 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 3 1136 422 231 203 7 chr5 72233406 72233554 -80303705 + MTD LTR MaLR 241 417 -2 3 1136 324 0 0 0 chr5 72234117 72234153 -80303106 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 3 1136 571 275 154 61 chr5 72234571 72234675 -80302584 + MTE2b LTR MaLR 3 108 -271 3 1136 1071 68 0 0 chr5 72234675 72234808 -80302451 + B1_Mus2 SINE Alu 1 133 -14 3 1136 522 0 0 0 chr5 72234808 72234866 -80302393 + (CAAAA)n Simple_repeat Simple_repeat 5 62 0 3 1136 571 275 154 61 chr5 72234866 72235105 -80302154 + MTE2b LTR MaLR 109 378 -1 3 1136 259 154 0 0 chr5 72235679 72235718 -80301541 - RMER30 DNA MER1_type -152 50 12 3 1136 27 49 0 0 chr5 72236226 72236267 -80300992 + AT_rich Low_complexity Low_complexity 1 41 0 3 1136 238 26 0 49 chr5 72236422 72236463 -80300796 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1136 315 0 0 0 chr5 72236503 72236538 -80300721 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1136 414 244 0 8 chr5 72236757 72236877 -80300382 - Lx7 LINE L1 -167 7529 7411 3 1136 4767 246 42 16 chr5 72236879 72238075 -80299184 - Lx6 LINE L1 -435 7025 5799 3 1136 1645 269 37 15 chr5 72238079 72238749 -80298510 - Lx6 LINE L1 -30 7430 6455 3 1136 3214 174 71 9 chr5 72238749 72239017 -80298242 - L1_Mur3 LINE L1 -1154 4726 4415 3 1136 486 0 0 0 chr5 72239017 72239071 -80298188 + (TTA)n Simple_repeat Simple_repeat 1 54 0 3 1136 3214 174 71 9 chr5 72239071 72239481 -80297778 - L1_Mur3 LINE L1 -1466 4414 4006 3 1136 1407 222 39 6 chr5 72239786 72239933 -80297326 - Lx9 LINE L1 -15 7629 7484 3 1136 204 97 0 0 chr5 72239933 72239964 -80297295 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1136 1407 222 39 6 chr5 72239964 72240147 -80297112 - Lx9 LINE L1 -161 7483 7288 3 1136 10510 83 101 13 chr5 72240964 72242144 -80295115 - L1_Mus2 LINE L1 -1 6565 5362 3 1136 2673 48 0 0 chr5 72242144 72242474 -80294785 + L1Md_T LINE L1 6253 6582 0 3 1136 10510 163 299 59 chr5 72242474 72243037 -80294222 - L1_Mus2 LINE L1 -516 5361 4932 3 1136 5488 73 44 1 chr5 72243037 72243782 -80293477 - L1_Mus1 LINE L1 0 6567 5791 3 1136 10510 163 299 59 chr5 72243782 72245718 -80291541 - L1_Mus2 LINE L1 -946 4931 2048 3 1136 441 0 0 0 chr5 72245718 72245767 -80291492 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1136 10510 163 299 59 chr5 72245767 72245966 -80291293 - L1_Mus2 LINE L1 -3830 2047 1855 3 1136 1826 232 22 172 chr5 72245966 72246685 -80290574 - RMER19C LTR ERVK 0 611 1 3 1136 1994 161 153 52 chr5 72246685 72247222 -80290037 - MurERV4_19-int LTR ERVK 0 5780 5190 3 1136 4914 101 11 17 chr5 72247301 72248047 -80289212 - MurERV4_19-int LTR ERVK -564 5216 4476 3 1136 1513 194 59 23 chr5 72248047 72248401 -80288858 - L1_Mus2 LINE L1 -4010 1870 1504 3 1136 2452 135 2 2 chr5 72248381 72248775 -80288484 - L1_Mm LINE L1 -380 5503 5110 3 1136 6314 117 29 10 chr5 72248774 72249742 -80287517 + Lx LINE L1 5657 6642 -12 3 1136 705 216 29 7 chr5 72250442 72250582 -80286677 + URR1A DNA MER1_type 1 143 -83 3 1136 295 318 11 11 chr5 72250839 72250928 -80286331 - MER20 DNA MER1_type -130 89 1 3 1136 411 73 0 0 chr5 72251111 72251166 -80286093 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1136 42 36 0 0 chr5 72251677 72251733 -80285526 + AT_rich Low_complexity Low_complexity 1 56 0 3 1136 21 0 0 0 chr5 72253020 72253041 -80284218 + AT_rich Low_complexity Low_complexity 1 21 0 3 1136 382 327 39 103 chr5 72253126 72253358 -80283901 - MER20 DNA MER1_type 0 219 3 3 1136 335 82 0 0 chr5 72254305 72254354 -80282905 + L1_Mm LINE L1 4971 5019 -864 3 1136 2651 67 176 0 chr5 72254354 72254758 -80282501 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1136 1262 80 29 82 chr5 72254759 72255039 -80282220 + IAPEz-int LTR ERVK 9 252 -7329 3 1136 236 321 0 0 chr5 72255039 72255092 -80282167 + RLTR27 LTR ERVK 223 275 -34 3 1136 3532 62 1 16 chr5 72255092 72255670 -80281589 + IAPEz-int LTR ERVK 168 662 -5819 3 1136 2165 83 0 0 chr5 72255670 72255948 -80281311 + IAPEz-int LTR ERVK 1359 1636 -4845 3 1136 6100 42 3 21 chr5 72255947 72256707 -80280552 + IAPEz-int LTR ERVK 5736 6481 0 3 1136 2643 62 182 0 chr5 72256707 72257109 -80280150 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1136 7855 70 4 10 chr5 72257109 72258676 -80278583 + L1_Mus2 LINE L1 5014 6566 0 3 1136 227 302 0 0 chr5 72258932 72258995 -80278264 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1136 370 224 102 27 chr5 72259117 72259264 -80277995 - L1MA8 LINE L1 -22 6269 6112 3 1136 421 351 0 26 chr5 72260410 72260562 -80276697 - RSINE1 SINE B4 -16 149 2 3 1136 261 298 110 12 chr5 72261641 72261804 -80275455 - L1MC LINE L1 -1493 4653 4475 3 1136 456 309 157 6 chr5 72262459 72262625 -80274634 + Lx8 LINE L1 7039 7229 -244 3 1136 434 155 10 0 chr5 72262634 72262731 -80274528 + (TTGG)n Simple_repeat Simple_repeat 2 99 0 3 1136 233 371 0 0 chr5 72262746 72262808 -80274451 + Lx8 LINE L1 7232 7293 -180 3 1136 202 234 0 0 chr5 72266594 72266641 -80270618 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1136 372 133 0 0 chr5 72266641 72266701 -80270558 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1136 428 285 71 31 chr5 72266867 72266994 -80270265 - B3 SINE B2 -8 208 77 3 1136 910 269 72 75 chr5 72267324 72267698 -80269561 - MLT1B LTR MaLR -6 384 12 3 1136 282 264 0 22 chr5 72268592 72268681 -80268578 + (TA)n Simple_repeat Simple_repeat 2 88 0 3 1136 1462 220 152 35 chr5 72268775 72268892 -80268367 - Lx9 LINE L1 0 7644 7528 3 1136 378 0 0 0 chr5 72268892 72268934 -80268325 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1136 243 0 0 0 chr5 72268943 72268970 -80268289 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1136 1462 220 152 35 chr5 72268970 72269271 -80267988 - Lx9 LINE L1 -149 7495 7168 3 1136 3320 187 82 57 chr5 72269532 72270246 -80267013 + MYSERV16_I-int LTR ERVK 1029 1704 -622 3 1136 284 0 28 0 chr5 72270246 72270282 -80266977 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1136 3320 191 72 42 chr5 72270282 72270495 -80266764 + MYSERV16_I-int LTR ERVK 1705 1920 -406 3 1136 1752 254 54 40 chr5 72270533 72271037 -80266222 - RLTR17 LTR ERVK -77 615 105 3 1136 1528 210 11 38 chr5 72271043 72271448 -80265811 + MYSERV-int LTR ERVK 6189 6546 -4 3 1136 2867 155 23 17 chr5 72271453 72271977 -80265282 + RLTR11A2 LTR ERVK 1 527 0 3 1136 22 56 0 0 chr5 72273247 72273283 -80263976 + AT_rich Low_complexity Low_complexity 1 36 0 3 1136 234 289 0 43 chr5 72273553 72273647 -80263612 + GA-rich Low_complexity Low_complexity 3 92 0 3 1136 5903 62 86 1 chr5 72273752 72274557 -80262702 - L1_Mus1 LINE L1 -1 6581 5706 3 1136 9442 106 16 45 chr5 72274557 72275887 -80261372 - L1_Mus1 LINE L1 -385 5498 4198 3 1136 432 0 0 0 chr5 72275887 72275935 -80261324 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1136 9442 106 16 45 chr5 72275935 72276157 -80261102 - L1_Mus1 LINE L1 -1686 4197 3993 3 1136 22 56 0 0 chr5 72276329 72276365 -80260894 + AT_rich Low_complexity Low_complexity 1 36 0 3 1136 271 341 122 50 chr5 72277832 72278153 -80259106 - L2 LINE L2 -1106 2313 1970 3 1136 234 350 71 49 chr5 72278199 72278424 -80258835 - L2 LINE L2 -1647 1772 1543 3 1136 1393 241 7 0 chr5 72278857 72279139 -80258120 - Lx5 LINE L1 -68 6982 6699 3 1136 554 301 85 17 chr5 72279174 72279443 -80257816 + Lx8 LINE L1 6961 7219 -254 3 1136 559 261 78 29 chr5 72279462 72279667 -80257592 - B3 SINE B2 0 216 2 4 1136 183 331 127 44 chr5 72280293 72280451 -80256808 + MIRb SINE MIR 97 267 -1 4 1136 370 250 36 18 chr5 72281169 72281279 -80255980 - MTEb LTR MaLR -8 371 260 4 1136 2268 338 55 74 chr5 72281461 72282088 -80255171 - MTE-int LTR MaLR -27 1553 929 4 1136 1194 179 24 5 chr5 72282088 72282296 -80254963 + B3 SINE B2 5 216 0 4 1136 2268 338 55 74 chr5 72282296 72282756 -80254503 - MTE-int LTR MaLR -652 928 482 4 1136 895 268 14 5 chr5 72282756 72282970 -80254289 - B3 SINE B2 0 216 1 4 1136 2268 338 55 74 chr5 72282970 72283270 -80253989 - MTE-int LTR MaLR -1099 481 192 4 1136 245 346 137 0 chr5 72283278 72283431 -80253828 - MTEb LTR MaLR -182 177 4 4 1136 342 317 41 53 chr5 72283899 72284069 -80253190 + ORR1E LTR MaLR 10 177 -182 4 1136 543 85 0 0 chr5 72284836 72284918 -80252341 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1136 2669 147 5 2 chr5 72285147 72285562 -80251697 - Lx4A LINE L1 0 7058 6643 4 1136 215 229 83 0 chr5 72285961 72286009 -80251250 - BC1_Mm scRNA scRNA -99 53 2 4 1136 358 321 30 0 chr5 72286013 72286147 -80251112 - B1F2 SINE Alu -7 142 5 4 1136 348 106 53 11 chr5 72286239 72286334 -80250925 + (TA)n Simple_repeat Simple_repeat 1 99 0 4 1136 348 24 0 0 chr5 72286475 72286516 -80250743 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1136 416 255 0 0 chr5 72287032 72287130 -80250129 - PB1D9 SINE Alu -22 98 1 4 1136 271 189 16 0 chr5 72287589 72287661 -80249598 - Lx4B LINE L1 -8 7050 6933 4 1136 1133 111 0 11 chr5 72287695 72287877 -80249382 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1136 413 165 0 21 chr5 72287882 72287975 -80249284 + GA-rich Low_complexity Low_complexity 1 91 0 4 1136 2921 48 5 0 chr5 72288704 72289075 -80248184 - L1Md_F2 LINE L1 -1 6581 6209 4 1136 438 276 96 68 chr5 72290046 72290099 -80247160 - Lx9 LINE L1 -28 7616 7566 4 1136 3285 38 5 2 chr5 72290099 72290494 -80246765 - MTA_Mm LTR MaLR 0 396 1 4 1136 438 276 96 68 chr5 72290494 72290867 -80246392 - Lx9 LINE L1 -79 7565 7178 4 1136 520 350 59 5 chr5 72290869 72291073 -80246186 - Lx8 LINE L1 -151 7322 7108 4 1136 352 282 13 1 chr5 72291384 72291485 -80245774 + MTD LTR MaLR 275 417 -2 4 1136 184 196 43 0 chr5 72291706 72291752 -80245507 - L2b LINE L2 -15 3372 3325 4 1136 1352 356 55 21 chr5 72292188 72292893 -80244366 + Lx8 LINE L1 6189 6917 -556 4 1136 282 318 58 61 chr5 72292909 72293187 -80244072 - RLTR15 LTR ERVK -25 334 58 4 1136 429 345 108 62 chr5 72293301 72293771 -80243488 + Lx8 LINE L1 6966 7457 -16 4 1136 29 0 0 0 chr5 72293782 72293811 -80243448 + AT_rich Low_complexity Low_complexity 1 29 0 4 1136 583 235 116 37 chr5 72293928 72294118 -80243141 + B3 SINE B2 1 205 -11 4 1136 944 232 43 5 chr5 72294143 72294351 -80242908 + B3 SINE B2 1 216 0 4 1136 275 332 188 7 chr5 72294614 72294881 -80242378 + L2a LINE L2 2791 3105 -321 4 1136 200 275 0 0 chr5 72295850 72295890 -80241369 - L2b LINE L2 -226 3149 3110 4 1136 693 285 11 11 chr5 72296025 72296206 -80241053 + B3A SINE B2 2 182 -16 4 1136 488 16 16 0 chr5 72296242 72296303 -80240956 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 4 1136 636 14 0 0 chr5 72296378 72296451 -80240808 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1136 265 253 60 12 chr5 72296743 72296827 -80240432 - MER5A1 DNA MER1_type -10 156 69 4 1136 198 103 0 0 chr5 72297210 72297239 -80240020 + (ATTTG)n Simple_repeat Simple_repeat 2 30 0 4 1136 1466 236 77 15 chr5 72297388 72297728 -80239531 - ORR1D2 LTR MaLR -1 369 9 4 1136 32 43 0 0 chr5 72298035 72298081 -80239178 + AT_rich Low_complexity Low_complexity 1 46 0 4 1136 25 0 0 0 chr5 72298690 72298715 -80238544 + AT_rich Low_complexity Low_complexity 1 25 0 4 1136 2223 158 10 15 chr5 72298788 72299198 -80238061 + Lx2 LINE L1 6577 6984 -13 4 1136 648 0 0 0 chr5 72299198 72299270 -80237989 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 4 1136 26 0 0 0 chr5 72299326 72299352 -80237907 + AT_rich Low_complexity Low_complexity 1 26 0 4 1136 180 375 61 20 chr5 72299790 72299888 -80237371 - MIRb SINE MIR -113 155 54 4 1136 908 220 30 0 chr5 72301141 72301341 -80235918 + Lx6 LINE L1 7245 7450 -10 4 1136 207 280 97 29 chr5 72302559 72302662 -80234597 - MIRm SINE MIR -140 136 27 4 1136 1535 283 78 37 chr5 72303803 72304505 -80232754 + MLT1D-int LTR MaLR 6 718 -1017 4 1136 470 321 62 26 chr5 72304616 72304808 -80232451 + MLT1D LTR MaLR 5 203 -302 4 1136 248 289 44 0 chr5 72304878 72304968 -80232291 + MLT1D-int LTR MaLR 1225 1318 -53 4 1136 273 360 30 0 chr5 72305022 72305122 -80232137 + MLT1D LTR MaLR 311 413 -92 4 1136 240 35 0 0 chr5 72305382 72305411 -80231848 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1136 279 0 0 0 chr5 72306674 72306705 -80230554 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1136 302 330 9 64 chr5 72306705 72306815 -80230444 - PB1D10 SINE Alu -8 109 6 4 1136 609 72 0 0 chr5 72308204 72308287 -80228972 + (TC)n Simple_repeat Simple_repeat 2 84 0 4 1136 1082 39 0 0 chr5 72309625 72309755 -80227504 - B1_Mus2 SINE Alu -16 131 2 4 1136 225 83 0 0 chr5 72310563 72310599 -80226660 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1136 1623 190 39 15 chr5 72310631 72310967 -80226292 - Lx4A LINE L1 -1 7057 6714 4 1136 2120 107 9 23 chr5 72311483 72311829 -80225430 - L1_Mus3 LINE L1 0 6638 6298 4 1136 323 245 19 10 chr5 72312147 72312250 -80225009 - Lx9 LINE L1 -7 7637 7534 4 1136 648 227 58 21 chr5 72312369 72312570 -80224689 + Lx9 LINE L1 6879 7214 -430 4 1136 1549 264 79 15 chr5 72313519 72314000 -80223259 + Lx7 LINE L1 6904 7415 -281 4 1136 231 306 0 47 chr5 72314035 72314162 -80223097 + Lx7 LINE L1 7568 7688 -8 4 1136 548 341 40 40 chr5 72314195 72314650 -80222609 + L1MB5 LINE L1 5682 6136 -38 4 1136 4214 162 70 28 chr5 72315631 72316456 -80220803 - RMER13A LTR ERVK 0 860 1 4 1136 244 311 37 37 chr5 72317559 72317666 -80219593 - L2c LINE L2 -25 3362 3256 4 1136 914 138 56 6 chr5 72319096 72319256 -80218003 + URR1A DNA MER1_type 58 225 -1 4 1136 537 367 68 8 chr5 72319957 72320207 -80217052 + MLT1J LTR MaLR 240 504 -8 4 1136 531 69 0 0 chr5 72320348 72320420 -80216839 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1136 29 28 0 0 chr5 72320597 72320633 -80216626 + AT_rich Low_complexity Low_complexity 1 36 0 4 1136 537 16 0 0 chr5 72320865 72320927 -80216332 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1136 269 288 0 0 chr5 72320929 72320995 -80216264 + RSINE1 SINE B4 100 165 0 4 1136 548 121 11 0 chr5 72321007 72321098 -80216161 + (TA)n Simple_repeat Simple_repeat 2 93 0 4 1136 9650 98 25 7 chr5 72321894 72323273 -80213986 + Lx2 LINE L1 5594 6997 0 4 1136 386 211 37 0 chr5 72323994 72324103 -80213156 - Lx9 LINE L1 0 7644 7532 4 1136 373 157 29 0 chr5 72324124 72324194 -80213065 - Lx9 LINE L1 -178 7466 7395 4 1136 436 168 11 36 chr5 72324904 72325000 -80212259 + MTC LTR MaLR 340 421 0 4 1136 2621 260 76 91 chr5 72325002 72325311 -80211948 + MTC-int LTR MaLR 1 332 -766 4 1136 192 77 0 0 chr5 72325311 72325337 -80211922 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 4 1136 2672 211 71 70 chr5 72325337 72325996 -80211263 + MTC-int LTR MaLR 333 1121 -137 4 1136 3019 86 5 2 chr5 72325996 72326402 -80210857 + MTB_Mm LTR MaLR 1 407 0 4 1136 2672 202 70 66 chr5 72326402 72326544 -80210715 + MTC-int LTR MaLR 1122 1256 -2 4 1136 351 64 0 0 chr5 72326546 72326593 -80210666 + MTC LTR MaLR 7 53 -368 4 1136 1147 154 16 8 chr5 72326570 72326792 -80210467 + MTC LTR MaLR 188 421 0 4 1136 369 0 0 0 chr5 72328027 72328068 -80209191 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1136 21 36 0 0 chr5 72328131 72328159 -80209100 + AT_rich Low_complexity Low_complexity 1 28 0 4 1136 470 321 7 7 chr5 72328277 72328418 -80208841 + MER82 DNA MER2_type 245 385 -268 4 1136 232 269 63 21 chr5 72328459 72328554 -80208705 - Lx9 LINE L1 -242 7402 7304 4 1136 277 219 71 24 chr5 72328552 72328636 -80208623 + Lx9 LINE L1 7386 7473 -171 4 1136 29 0 0 0 chr5 72328736 72328765 -80208494 + AT_rich Low_complexity Low_complexity 1 29 0 4 1136 519 313 73 15 chr5 72328834 72329038 -80208221 + MER82 DNA MER2_type 438 653 0 4 1136 280 401 59 41 chr5 72329050 72329219 -80208040 + MLT1H2 LTR MaLR 3 174 -315 4 1136 546 297 147 44 chr5 72329276 72329654 -80207605 - MTE2b LTR MaLR 0 379 1 4 1136 534 257 37 0 chr5 72330633 72330769 -80206490 - MTD LTR MaLR 0 419 279 4 1136 583 301 25 41 chr5 72331948 72332191 -80205068 - MER31B LTR ERV1 -3 463 225 4 1136 382 260 238 66 chr5 72332233 72332368 -80204891 + B3 SINE B2 1 170 -46 4 1136 393 95 0 0 chr5 72332368 72332431 -80204828 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1136 382 260 238 66 chr5 72332431 72332476 -80204783 + B3 SINE B2 171 212 -4 4 1136 192 258 172 62 chr5 72333593 72333721 -80203538 - L2a LINE L2 -21 3405 3264 4 1136 647 321 80 62 chr5 72334670 72335006 -80202253 - MLT1B LTR MaLR -47 343 2 4 1136 330 388 72 68 chr5 72335015 72335336 -80201923 - MLT1B-int LTR MaLR -26 1345 1024 4 1136 5240 47 0 11 chr5 72336243 72336894 -80200365 + L1Md_F3 LINE L1 5940 6583 -1 4 1136 260 313 50 74 chr5 72337177 72337298 -80199961 - LTR33 LTR ERVL -318 197 80 4 1136 241 314 144 8 chr5 72337891 72338016 -80199243 - MIRb SINE MIR -102 166 25 4 1136 2316 300 78 28 chr5 72338139 72339409 -80197850 - Lx9 LINE L1 -133 7511 6178 4 1136 1398 222 110 34 chr5 72339527 72339937 -80197322 + BGLII_B LTR ERVK 1 441 0 4 1136 24 0 0 0 chr5 72340129 72340153 -80197106 + AT_rich Low_complexity Low_complexity 1 24 0 4 1136 21 0 0 0 chr5 72340242 72340263 -80196996 + AT_rich Low_complexity Low_complexity 1 21 0 4 1136 3563 58 0 0 chr5 72340429 72340912 -80196347 - L1Md_F3 LINE L1 0 6584 6123 4 1136 231 36 0 0 chr5 72341971 72341999 -80195260 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 4 1136 218 253 0 22 chr5 72342155 72342244 -80195015 + GA-rich Low_complexity Low_complexity 3 89 0 4 1136 585 333 59 44 chr5 72342536 72342995 -80194264 - Lx8 LINE L1 -72 7401 6936 4 1136 296 311 22 0 chr5 72343217 72343307 -80193952 + BC1_Mm scRNA scRNA 1 92 -60 4 1136 372 125 0 0 chr5 72344603 72344667 -80192592 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1136 380 283 19 6 chr5 72344768 72344928 -80192331 + Lx7 LINE L1 7531 7692 -4 4 1136 31 58 0 0 chr5 72344977 72345029 -80192230 + AT_rich Low_complexity Low_complexity 1 52 0 4 1136 341 293 142 25 chr5 72345675 72346077 -80191182 - L1ME3 LINE L1 -81 6081 5633 4 1136 222 37 0 0 chr5 72347729 72347756 -80189503 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1136 286 337 11 51 chr5 72349035 72349213 -80188046 - MIR SINE MIR -9 253 83 5 1136 736 229 0 0 chr5 72349314 72349445 -80187814 + B1_Mus2 SINE Alu 8 138 -9 5 1136 183 100 0 0 chr5 72349606 72349636 -80187623 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1136 1015 248 5 0 chr5 72349695 72349909 -80187350 + B3 SINE B2 2 216 0 5 1136 459 0 0 0 chr5 72350974 72351025 -80186234 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 5 1136 330 326 40 33 chr5 72351316 72351453 -80185806 + MIRb SINE MIR 6 149 -119 5 1137 185 338 29 0 chr5 72351792 72351860 -80185399 - MER5A DNA MER1_type -3 186 117 5 1137 579 15 0 0 chr5 72352646 72352714 -80184545 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 1137 306 0 0 0 chr5 72352714 72352747 -80184512 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1137 2014 210 93 18 chr5 72353017 72353566 -80183693 + Lx7 LINE L1 6770 7359 -337 5 1137 690 184 12 6 chr5 72354515 72354684 -80182575 - Lx9 LINE L1 -7 7637 7468 5 1137 643 309 67 0 chr5 72354858 72355052 -80182207 + B3 SINE B2 2 208 -8 5 1137 1377 239 127 0 chr5 72355224 72355554 -80181705 + MTD LTR MaLR 43 414 -5 5 1137 22 0 0 0 chr5 72355964 72355986 -80181273 + AT_rich Low_complexity Low_complexity 1 22 0 5 1137 210 37 0 0 chr5 72357282 72357309 -80179950 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1137 323 259 37 0 chr5 72357500 72357581 -80179678 + PB1D10 SINE Alu 26 109 -8 5 1137 1527 86 0 0 chr5 72357785 72357995 -80179264 - L1_Mus2 LINE L1 -320 6246 6037 5 1137 1063 94 95 50 chr5 72358004 72358183 -80179076 + L1_Mus2 LINE L1 6380 6566 0 5 1137 1253 56 0 0 chr5 72358198 72358359 -80178900 - L1_Mus3 LINE L1 -394 6244 6084 5 1137 2752 78 10 5 chr5 72358359 72358744 -80178515 + L1_Mus3 LINE L1 6238 6624 -14 5 1137 333 0 0 0 chr5 72359257 72359294 -80177965 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 5 1137 395 333 29 0 chr5 72359295 72359400 -80177859 - B1F SINE Alu -13 136 29 5 1137 1410 168 33 4 chr5 72360696 72360971 -80176288 - Lx5 LINE L1 -355 6695 6413 5 1137 1399 220 66 16 chr5 72360957 72361276 -80175983 + Lx5 LINE L1 6713 7047 -3 5 1137 232 292 26 9 chr5 72364765 72364879 -80172380 + (TA)n Simple_repeat Simple_repeat 1 116 0 5 1137 345 362 19 12 chr5 72364919 72365081 -80172178 - RSINE1 SINE B4 -1 164 2 5 1137 1009 228 157 16 chr5 72365307 72365619 -80171640 + RCHARR1 DNA MER1_type 422 777 -197 5 1137 502 363 16 96 chr5 72366775 72367089 -80170170 + B4A SINE B4 3 291 -1 5 1137 730 151 27 0 chr5 72367158 72367304 -80169955 + GA-rich Low_complexity Low_complexity 4 153 0 5 1137 249 349 53 115 chr5 72367305 72367626 -80169633 - ORR1E LTR MaLR -52 307 7 5 1137 254 306 108 36 chr5 72368786 72368925 -80168334 - MIRb SINE MIR -64 204 56 5 1137 321 159 14 0 chr5 72369117 72369186 -80168073 - Lx6 LINE L1 -1 7459 7390 5 1137 2982 236 80 9 chr5 72369217 72369967 -80167292 - Lx6 LINE L1 -140 7320 6518 5 1137 694 146 0 0 chr5 72369969 72370079 -80167180 + Lx6 LINE L1 5625 5734 -1726 5 1137 36206 40 14 3 chr5 72370089 72376153 -80161106 - L1Md_T LINE L1 0 6585 446 5 1137 229 250 0 0 chr5 72376214 72376278 -80160981 + T-rich Low_complexity Low_complexity 4 67 0 5 1137 2756 237 12 28 chr5 72376288 72377025 -80160234 + Lx6 LINE L1 5784 6515 -945 5 1137 933 290 70 45 chr5 72377094 72377578 -80159681 + Charlie4a DNA MER1_type 11 506 -2 5 1137 527 15 0 0 chr5 72377959 72378024 -80159235 + B1_Mm SINE Alu 82 146 -1 5 1137 396 0 0 0 chr5 72378044 72378088 -80159171 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1137 423 0 0 0 chr5 72379658 72379705 -80157554 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1137 1129 90 83 6 chr5 72379892 72380060 -80157199 + B2_Mm2 SINE B2 1 181 -14 5 1137 2079 45 0 0 chr5 72380075 72380341 -80156918 - L1Md_F2 LINE L1 -430 6152 5887 5 1137 3202 86 0 2 chr5 72380341 72380772 -80156487 + L1Md_F2 LINE L1 6140 6569 -13 5 1137 654 49 0 0 chr5 72381052 72381134 -80156125 + (CTTG)n Simple_repeat Simple_repeat 2 83 0 5 1137 22 0 0 0 chr5 72381712 72381734 -80155525 + AT_rich Low_complexity Low_complexity 1 22 0 5 1137 870 246 35 0 chr5 72381740 72381943 -80155316 - B3 SINE B2 -4 212 3 5 1137 3014 34 0 0 chr5 72382007 72382386 -80154873 - L1Md_Gf LINE L1 -5585 937 559 5 1137 3190 42 12 19 chr5 72382386 72382804 -80154455 + L1Md_T LINE L1 6168 6582 0 5 1137 6707 30 1 2 chr5 72383164 72383961 -80153298 - L1Md_F2 LINE L1 0 6582 5787 5 1137 305 279 187 7 chr5 72384037 72384192 -80153067 - MLT1D LTR MaLR 0 505 323 5 1137 210 91 0 0 chr5 72385367 72385400 -80151859 + (CATA)n Simple_repeat Simple_repeat 2 34 0 5 1137 476 32 0 16 chr5 72385620 72385683 -80151576 + (TTTTTA)n Simple_repeat Simple_repeat 4 65 0 5 1137 939 93 0 0 chr5 72385683 72385812 -80151447 - B1_Mus1 SINE Alu 0 148 20 5 1137 821 203 106 60 chr5 72385952 72386151 -80151108 - B3 SINE B2 0 216 9 5 1137 795 316 32 22 chr5 72386389 72386793 -80150466 - L1MA4A LINE L1 -396 5907 5500 5 1137 1030 275 98 31 chr5 72386919 72387630 -80149629 - L1MA4A LINE L1 -606 5241 4511 5 1137 199 95 23 45 chr5 72388970 72389014 -80148245 + GA-rich Low_complexity Low_complexity 4 46 0 5 1137 671 351 119 63 chr5 72389407 72389933 -80147326 + MLT1F2 LTR MaLR 1 625 -2 5 1137 184 333 24 0 chr5 72390114 72390198 -80147061 - MIR SINE MIR -1 261 176 5 1137 1164 199 0 36 chr5 72391081 72391305 -80145954 + B3 SINE B2 1 216 0 5 1137 28 0 0 0 chr5 72391543 72391571 -80145688 + AT_rich Low_complexity Low_complexity 1 28 0 5 1137 813 271 5 23 chr5 72392063 72392282 -80144977 + B3 SINE B2 1 215 -1 5 1137 329 323 20 16 chr5 72392733 72392884 -80144375 - MLT1A1 LTR MaLR -1 407 209 5 1137 1428 286 58 46 chr5 72393142 72393707 -80143552 - Lx7 LINE L1 -403 7293 6722 5 1137 481 267 85 41 chr5 72393736 72393982 -80143277 + Lx7 LINE L1 5948 6204 -1492 5 1137 436 72 29 0 chr5 72394235 72394304 -80142955 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 1137 432 0 0 0 chr5 72394450 72394498 -80142761 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1137 504 311 21 58 chr5 72394633 72394824 -80142435 + B3A SINE B2 15 198 0 5 1137 751 310 117 21 chr5 72395794 72396120 -80141139 - MTD LTR MaLR -3 416 60 5 1137 23 54 0 0 chr5 72396332 72396369 -80140890 + AT_rich Low_complexity Low_complexity 1 37 0 5 1137 855 238 119 45 chr5 72397240 72397552 -80139707 - Lx8 LINE L1 0 7473 7139 5 1137 1296 205 7 21 chr5 72398012 72398296 -80138963 + Lx5 LINE L1 6754 7033 -17 5 1137 611 60 12 0 chr5 72398300 72398384 -80138875 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 5 1137 34 55 0 0 chr5 72398822 72398877 -80138382 + AT_rich Low_complexity Low_complexity 1 55 0 5 1137 267 315 28 92 chr5 72400148 72400365 -80136894 + B3 SINE B2 1 203 -13 5 1137 274 250 26 0 chr5 72400365 72400441 -80136818 + (CA)n Simple_repeat Simple_repeat 1 78 0 5 1137 22 56 0 0 chr5 72400778 72400814 -80136445 + AT_rich Low_complexity Low_complexity 1 36 0 5 1137 587 326 48 6 chr5 72402349 72402685 -80134574 - L1M3 LINE L1 -1171 4969 4620 5 1137 438 227 7 77 chr5 72402689 72402832 -80134427 + L1MA7 LINE L1 6087 6219 -72 5 1137 5958 77 47 5 chr5 72402904 72404497 -80132762 + L1VL2 LINE L1 157 1826 -1789 5 1137 289 308 0 32 chr5 72404634 72404728 -80132531 - PB1D10 SINE Alu 0 117 27 5 1137 3540 52 0 7 chr5 72405322 72405767 -80131492 - L1Md_F2 LINE L1 0 6582 6141 5 1137 620 94 21 0 chr5 72406261 72406357 -80130902 + (GAAA)n Simple_repeat Simple_repeat 4 101 0 5 1137 195 42 0 0 chr5 72406365 72406389 -80130870 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 5 1137 2758 243 59 42 chr5 72406806 72408139 -80129120 + L1_Mur3 LINE L1 868 2231 -3649 5 1137 4631 266 48 16 chr5 72408153 72408783 -80128476 + Lx7 LINE L1 5518 6170 -1526 5 1137 1684 67 5 0 chr5 72408783 72409006 -80128253 + L1Md_F2 LINE L1 6347 6570 -12 5 1137 4631 283 58 34 chr5 72409006 72410134 -80127125 + Lx7 LINE L1 6171 7322 -374 5 1137 271 0 25 25 chr5 72410139 72410179 -80127080 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 5 1137 214 135 57 19 chr5 72410188 72410241 -80127018 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 5 1137 207 0 0 0 chr5 72410438 72410461 -80126798 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1137 1515 130 144 0 chr5 72410625 72410902 -80126357 + RMER17B LTR ERVK 1 317 -641 5 1137 1691 172 96 30 chr5 72410882 72411336 -80125923 + RMER17B LTR ERVK 468 948 -10 5 1137 924 284 48 38 chr5 72411391 72411680 -80125579 + B4 SINE B4 1 292 0 5 1137 248 306 0 0 chr5 72411695 72411767 -80125492 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1137 225 0 0 0 chr5 72412617 72412642 -80124617 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1137 213 304 41 50 chr5 72412642 72412763 -80124496 + MIR SINE MIR 32 151 -111 5 1137 669 286 82 39 chr5 72412840 72413120 -80124139 + MLT1D LTR MaLR 117 408 -97 5 1137 1004 214 41 27 chr5 72413120 72413341 -80123918 + Lx5 LINE L1 6182 6405 -645 5 1137 434 316 24 71 chr5 72413403 72413573 -80123686 - RSINE1 SINE B4 -3 162 1 5 1137 373 247 32 11 chr5 72413573 72413667 -80123592 + MLT1D LTR MaLR 402 497 -8 5 1137 976 146 103 5 chr5 72415429 72415643 -80121616 + Lx9 LINE L1 7408 7642 -2 5 1137 575 333 24 29 chr5 72415877 72416084 -80121175 - MER20 DNA MER1_type 0 219 14 5 1137 450 94 0 0 chr5 72417001 72417065 -80120194 + (TA)n Simple_repeat Simple_repeat 1 64 0 5 1137 189 355 91 14 chr5 72418089 72418232 -80119027 - MIRb SINE MIR -59 209 56 5 1137 547 240 110 40 chr5 72418319 72418618 -80118641 + L1M3 LINE L1 3736 4055 -2088 5 1137 708 282 87 28 chr5 72418613 72419072 -80118187 + L1M3 LINE L1 4699 5184 -956 5 1137 262 218 87 29 chr5 72419368 72419472 -80117787 - L1M3 LINE L1 -1421 4719 4610 5 1137 633 283 179 57 chr5 72419541 72420020 -80117239 - L1M3 LINE L1 -1518 4622 4093 5 1137 1074 90 0 0 chr5 72420020 72420165 -80117094 + B1_Mus2 SINE Alu 1 145 -2 5 1137 441 81 0 0 chr5 72420165 72420227 -80117032 + (TAA)n Simple_repeat Simple_repeat 2 63 0 6 1137 633 283 179 57 chr5 72420227 72420772 -80116487 - L1M3 LINE L1 -2048 4092 3472 5 1137 25 31 0 0 chr5 72423931 72423963 -80113296 + AT_rich Low_complexity Low_complexity 1 32 0 6 1137 507 269 57 52 chr5 72424768 72424960 -80112299 - RMER15 LTR ERVL -87 488 296 6 1137 180 0 0 0 chr5 72425183 72425203 -80112056 + (CTG)n Simple_repeat Simple_repeat 1 20 0 6 1137 287 180 49 0 chr5 72425207 72425268 -80111991 + MLT1A0 LTR MaLR 3 66 -299 6 1137 270 306 65 102 chr5 72425281 72425307 -80111952 - MTA_Mm LTR MaLR -172 207 186 6 1137 1625 91 0 8 chr5 72425307 72425552 -80111707 - L1_Mus4 LINE L1 -6 6630 6388 6 1137 1252 55 43 32 chr5 72425552 72425740 -80111519 - MTA_Mm LTR MaLR -206 190 1 6 1137 821 104 15 7 chr5 72425742 72425877 -80111382 + L1_Mur2 LINE L1 4619 4754 -1123 6 1137 317 315 99 90 chr5 72425878 72426101 -80111158 + MLT1A0 LTR MaLR 89 313 -52 6 1137 29 0 0 0 chr5 72426784 72426813 -80110446 + AT_rich Low_complexity Low_complexity 1 29 0 6 1137 26 30 0 0 chr5 72426868 72426901 -80110358 + AT_rich Low_complexity Low_complexity 1 33 0 6 1137 1072 299 95 55 chr5 72427180 72427687 -80109572 - MLT2B4 LTR ERVL -3 553 27 6 1137 201 360 88 60 chr5 72427777 72427993 -80109266 + L3 LINE CR1 4248 4469 -20 6 1137 303 235 0 0 chr5 72428592 72428690 -80108569 + CT-rich Low_complexity Low_complexity 1 98 0 6 1137 870 270 47 100 chr5 72430056 72430356 -80106903 + B4 SINE B4 9 292 0 6 1137 412 251 164 82 chr5 72431454 72431771 -80105488 - Lx9 LINE L1 -41 7603 7261 6 1137 1262 309 15 10 chr5 72431770 72432166 -80105093 - Lx9 LINE L1 -859 6785 6388 6 1137 1098 70 7 7 chr5 72432166 72432311 -80104948 + B1_Mm SINE Alu 2 146 -1 6 1137 242 310 9 17 chr5 72432375 72432490 -80104769 - Lx9 LINE L1 -1380 6264 6151 6 1137 323 236 0 14 chr5 72432520 72432593 -80104666 - Lx9 LINE L1 -1676 5968 5897 6 1137 289 326 84 14 chr5 72433233 72433376 -80103883 - L2 LINE L2 -926 2493 2341 6 1137 1244 149 19 5 chr5 72434052 72434267 -80102992 + Lx4B LINE L1 6834 7051 -7 6 1137 1078 57 0 0 chr5 72434364 72434505 -80102754 + L1_Mus1 LINE L1 6427 6567 0 6 1137 894 161 9 115 chr5 72435920 72436138 -80101121 + ORR1C1 LTR MaLR 1 195 -183 6 1137 1182 179 49 4 chr5 72436132 72436357 -80100902 + ORR1B2 LTR MaLR 133 367 0 6 1137 317 301 28 37 chr5 72436962 72437069 -80100190 - RMER12 LTR ERVK -471 851 746 6 1137 819 224 20 15 chr5 72437113 72437312 -80099947 + Lx8 LINE L1 6900 7099 -374 6 1137 3596 127 15 138 chr5 72437541 72438336 -80098923 - RLTR21 LTR ERVK 0 1572 876 6 1137 201 39 0 0 chr5 72438338 72438364 -80098895 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1137 6013 113 13 3 chr5 72439392 72440261 -80096998 - RLTR21 LTR ERVK -695 877 1 6 1137 2309 53 3 16 chr5 72440469 72440776 -80096483 + L1Md_F2 LINE L1 6279 6581 -1 6 1137 5935 33 4 4 chr5 72441008 72441731 -80095528 - L1Md_F3 LINE L1 -13 6571 5849 6 1137 527 28 0 0 chr5 72441731 72441797 -80095462 + L1Md_F3 LINE L1 5588 5657 -514 6 1137 378 0 0 0 chr5 72442580 72442622 -80094637 + (TTA)n Simple_repeat Simple_repeat 2 43 0 6 1137 3547 91 29 16 chr5 72442627 72443143 -80094116 - Lx3B LINE L1 -3 6970 6448 6 1137 1803 112 11 4 chr5 72443145 72443406 -80093853 + Lx3B LINE L1 6106 6368 -605 6 1137 549 99 0 0 chr5 72444110 72444191 -80093068 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1137 222 304 0 0 chr5 72444749 72444818 -80092441 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 6 1137 970 262 0 9 chr5 72445371 72445587 -80091672 + B3 SINE B2 3 216 0 6 1137 21 0 0 0 chr5 72445587 72445608 -80091651 + AT_rich Low_complexity Low_complexity 1 21 0 6 1137 277 302 93 9 chr5 72445954 72446061 -80091198 - MIRc SINE MIR -130 138 23 6 1137 819 164 13 7 chr5 72446201 72446354 -80090905 - Lx5 LINE L1 0 7050 6897 6 1137 357 188 0 0 chr5 72447109 72447194 -80090065 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 1137 380 281 0 8 chr5 72447438 72447560 -80089699 - HAL1 LINE L1 -321 2186 2066 6 1137 825 275 104 12 chr5 72447731 72447981 -80089278 + B4 SINE B4 1 273 -19 6 1137 195 42 0 0 chr5 72448044 72448068 -80089191 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1137 262 248 149 48 chr5 72448076 72448284 -80088975 - HAL1 LINE L1 -853 1654 1426 6 1137 769 272 108 15 chr5 72448400 72448743 -80088516 - L1MC4 LINE L1 -2156 5886 5512 6 1137 479 204 29 10 chr5 72448743 72448847 -80088412 - MTEa LTR MaLR 0 379 274 6 1137 345 238 0 0 chr5 72448849 72448950 -80088309 + (TG)n Simple_repeat Simple_repeat 2 102 0 6 1137 227 292 55 36 chr5 72449088 72449198 -80088061 - HAL1 LINE L1 -2253 254 143 6 1137 201 74 0 0 chr5 72449232 72449259 -80088000 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1137 360 176 0 0 chr5 72449259 72449327 -80087932 + GA-rich Low_complexity Low_complexity 5 72 0 6 1137 718 196 11 17 chr5 72449320 72449415 -80087844 + polypurine Low_complexity Low_complexity 2 98 0 6 1137 1148 67 0 43 chr5 72449415 72449603 -80087656 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 6 1137 718 196 11 17 chr5 72449603 72449683 -80087576 + polypurine Low_complexity Low_complexity 99 176 0 6 1137 182 366 81 8 chr5 72450224 72450348 -80086911 + MIRb SINE MIR 69 201 -67 6 1137 1609 154 115 31 chr5 72450348 72450669 -80086590 - ORR1C1 LTR MaLR -2 376 29 6 1137 414 0 0 0 chr5 72450717 72450763 -80086496 + (TATG)n Simple_repeat Simple_repeat 2 47 0 6 1137 212 54 54 0 chr5 72451602 72451639 -80085620 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1137 214 350 57 28 chr5 72451678 72451819 -80085440 - MIRc SINE MIR -36 232 88 6 1137 28 29 0 0 chr5 72452525 72452560 -80084699 + AT_rich Low_complexity Low_complexity 1 35 0 6 1137 7368 112 8 28 chr5 72452560 72453651 -80083608 - Lx3A LINE L1 -3 6978 5910 6 1137 1081 277 79 45 chr5 72454251 72454629 -80082630 - Lx8 LINE L1 -12 7461 7071 6 1137 2258 215 0 22 chr5 72454609 72455071 -80082188 - Lx9 LINE L1 -685 6959 6508 6 1137 557 323 48 18 chr5 72456243 72456470 -80080789 - MIR SINE MIR 0 262 29 6 1137 180 0 0 0 chr5 72456543 72456563 -80080696 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 1137 229 292 45 15 chr5 72457882 72457948 -80079311 - L2c LINE L2 -32 3355 3288 6 1137 361 53 18 18 chr5 72458127 72458184 -80079075 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1137 467 313 53 0 chr5 72458643 72458774 -80078485 + B1F SINE Alu 1 138 -11 6 1137 3432 14 0 3 chr5 72460911 72461279 -80075980 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1137 56396 20 20 2 chr5 72461279 72467639 -80069620 - IAPEz-int LTR ERVK 0 6481 8 6 1137 3432 14 0 3 chr5 72467639 72468007 -80069252 - IAPLTR1_Mm LTR ERVK 0 367 1 6 1137 575 304 56 89 chr5 72468047 72468405 -80068854 + LTR33 LTR ERVL 169 514 -1 6 1137 3885 74 0 41 chr5 72469547 72470055 -80067204 + L1_Mus2 LINE L1 6080 6566 0 6 1137 1193 141 125 5 chr5 72470126 72470326 -80066933 + URR1A DNA MER1_type 1 224 -2 6 1137 242 277 46 46 chr5 72470766 72470853 -80066406 - B1_Mus1 SINE Alu -55 93 7 6 1137 258 254 80 26 chr5 72470998 72471111 -80066148 - Lx5 LINE L1 0 7050 6932 6 1137 519 128 0 0 chr5 72471277 72471363 -80065896 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 1137 567 29 0 0 chr5 72471503 72471572 -80065687 + (TC)n Simple_repeat Simple_repeat 2 70 0 6 1137 321 26 0 0 chr5 72472790 72472828 -80064431 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1137 2081 199 69 96 chr5 72473193 72473715 -80063544 - RLTR18B LTR ERVK -4 508 1 6 1137 789 300 92 18 chr5 72474563 72474889 -80062370 - LTR53 LTR ERVL -139 380 31 6 1137 513 0 0 0 chr5 72475899 72475956 -80061303 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1137 666 37 0 0 chr5 72476923 72477004 -80060255 + (TTGG)n Simple_repeat Simple_repeat 2 82 0 6 1137 349 347 50 67 chr5 72477030 72477209 -80060050 + B4 SINE B4 2 177 -115 6 1137 931 96 13 20 chr5 72477219 72477368 -80059891 - URR1A DNA MER1_type -6 220 73 6 1137 3746 217 110 23 chr5 72477494 72478562 -80058697 + RMER1B Other Other 106 1056 -10 6 1137 230 355 84 7 chr5 72478654 72478796 -80058463 - MIR SINE MIR -62 200 48 6 1137 3333 65 0 5 chr5 72478843 72479247 -80058012 + L1Md_F2 LINE L1 6169 6570 -12 6 1137 565 262 66 101 chr5 72479478 72479885 -80057374 + RMER10A LTR ERVL 12 404 -38 6 1137 671 302 38 6 chr5 72479968 72480151 -80057108 + MTD LTR MaLR 1 189 -230 6 1137 7051 53 2 25 chr5 72480166 72481059 -80056200 + L1_Mus2 LINE L1 5694 6566 0 6 1137 637 247 81 20 chr5 72481077 72481275 -80055984 + MTD LTR MaLR 196 405 -14 6 1137 230 189 12 108 chr5 72481495 72481578 -80055681 + BLACKJACK DNA AcHobo 1761 1835 -1109 6 1137 325 261 43 17 chr5 72482395 72482512 -80054747 - L1MA4 LINE L1 -29 6271 6152 6 142 1025 283 110 35 chr5 72482566 72482939 -80054320 - MTD LTR MaLR -9 410 10 6 1138 1674 259 86 45 chr5 72483004 72483494 -80053765 - L1MA4 LINE L1 -307 5993 5487 6 1138 1375 72 56 0 chr5 72483494 72483674 -80053585 - B2_Mm1t SINE B2 -3 190 1 6 1138 1674 259 86 45 chr5 72483674 72483891 -80053368 - L1MA4 LINE L1 -814 5486 5257 6 1138 274 248 168 17 chr5 72484428 72484547 -80052712 - MER20 DNA MER1_type -82 137 1 6 1138 2504 310 60 42 chr5 72486263 72487409 -80049850 - Lx8 LINE L1 -2 7471 6305 6 1138 460 204 155 30 chr5 72487837 72488070 -80049189 + MTEa LTR MaLR 90 375 -4 6 1138 27 0 0 0 chr5 72488358 72488385 -80048874 + AT_rich Low_complexity Low_complexity 1 27 0 6 1138 4202 176 40 28 chr5 72488920 72489664 -80047595 - Lx5 LINE L1 0 7050 6298 6 1138 642 318 124 63 chr5 72490134 72490608 -80046651 - MER21B LTR ERV1 -72 791 289 6 1138 501 340 74 5 chr5 72490630 72490819 -80046440 - MER21B LTR ERV1 -634 229 28 6 1138 344 361 102 8 chr5 72491465 72491730 -80045529 + L3 LINE CR1 3468 3757 -732 6 1138 384 22 0 0 chr5 72492002 72492047 -80045212 + (A)n Simple_repeat Simple_repeat 1 45 0 6 1138 6355 96 52 12 chr5 72492240 72493186 -80044073 - Lx3C LINE L1 -59 6917 5934 6 1138 252 323 0 0 chr5 72493322 72493387 -80043872 + ID4_ SINE ID 18 82 -1 6 1138 459 0 0 0 chr5 72493406 72493457 -80043802 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6 1138 921 294 47 14 chr5 72493740 72494016 -80043243 + B4A SINE B4 2 286 -6 6 1138 198 103 0 0 chr5 72494030 72494059 -80043200 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1138 612 220 0 0 chr5 72494874 72494983 -80042276 + B1_Mur1 SINE Alu 29 137 -12 6 1138 462 157 0 0 chr5 72494983 72495066 -80042193 + CT-rich Low_complexity Low_complexity 2 84 0 7 1138 231 114 0 0 chr5 72495084 72495119 -80042140 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1138 944 342 45 63 chr5 72496120 72496675 -80040584 - MER44B DNA MER2_type 0 550 6 7 1138 385 241 35 3 chr5 72496968 72497254 -80040005 + (TCTA)n Simple_repeat Simple_repeat 1 295 0 7 1138 286 258 41 10 chr5 72497274 72497372 -80039887 + (TCCA)n Simple_repeat Simple_repeat 3 103 0 7 1138 427 118 12 12 chr5 72497399 72497485 -80039774 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 7 1138 3502 62 9 7 chr5 72498842 72499278 -80037981 + L1_Mus3 LINE L1 6202 6638 0 7 1138 1242 40 0 0 chr5 72499754 72499906 -80037353 + (TCTCCC)n Simple_repeat Simple_repeat 6 157 0 7 1138 564 293 47 47 chr5 72501191 72501363 -80035896 + B3A SINE B2 1 172 -26 1 1138 10131 29 0 0 chr5 72501364 72503195 -80034064 - L1Md_T LINE L1 0 6582 4752 2 1138 267 32 0 0 chr5 72503191 72503222 -80034037 + L1_Mm LINE L1 3563 3593 -2290 3 1138 39286 5 0 0 chr5 72503220 72508594 -80028665 + L1Md_A LINE L1 213 5586 -297 4 1138 9538 6 0 0 chr5 72508594 72509651 -80027608 + L1Md_A LINE L1 5587 6582 0 4 1138 10459 20 0 0 chr5 72509651 72510848 -80026411 + L1_Mm LINE L1 3572 4768 -1115 3 1138 24 77 0 0 chr5 72510939 72510991 -80026268 + AT_rich Low_complexity Low_complexity 1 52 0 5 1138 305 272 58 0 chr5 72511189 72511292 -80025967 - Lx8 LINE L1 -3 7470 7362 6 1138 276 30 0 0 chr5 72511323 72511356 -80025903 + (ATG)n Simple_repeat Simple_repeat 3 35 0 7 1138 407 206 0 40 chr5 72511361 72511462 -80025797 + Lx7 LINE L1 5743 5839 -1857 8 1138 622 282 7 0 chr5 72511744 72511886 -80025373 - ID_B1 SINE B4 0 224 82 9 1138 234 308 9 80 chr5 72511785 72511898 -80025361 - MT2B LTR ERVL -343 258 154 1 1138 561 126 0 0 chr5 72512605 72512716 -80024543 + (TC)n Simple_repeat Simple_repeat 1 111 0 1 1138 504 32 0 0 chr5 72512716 72512778 -80024481 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1138 329 310 73 54 chr5 72513617 72513966 -80023293 - MLT1A0 LTR MaLR 0 408 7 1 1138 289 336 0 0 chr5 72514613 72514711 -80022548 + MTE2b LTR MaLR 3 100 -279 1 1138 337 270 55 83 chr5 72514710 72514819 -80022440 + MTE2b LTR MaLR 60 165 -214 1 1138 383 55 0 0 chr5 72514819 72514874 -80022385 - L1_Mus3 LINE L1 -4 6634 6580 1 1138 208 98 0 47 chr5 72515056 72515099 -80022160 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1138 1065 63 0 34 chr5 72515624 72515771 -80021488 + B1_Mus2 SINE Alu 6 147 0 1 1138 336 102 0 0 chr5 72515771 72515820 -80021439 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1138 545 117 2 3 chr5 72515827 72515918 -80021341 - MTD LTR MaLR -6 413 314 1 1138 201 337 0 42 chr5 72516167 72516263 -80020996 + L2a LINE L2 3280 3371 -55 2 1138 387 0 0 0 chr5 72516464 72516507 -80020752 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1138 1932 191 87 5 chr5 72516711 72517100 -80020159 - MTC LTR MaLR 0 421 1 2 1138 310 402 50 77 chr5 72518417 72518794 -80018465 - MLT1K LTR MaLR -164 431 65 2 1138 321 68 0 0 chr5 72518941 72518985 -80018274 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1138 271 288 37 46 chr5 72519344 72519453 -80017806 + PB1D7 SINE Alu 1 108 -12 2 1138 338 305 244 32 chr5 72519581 72519869 -80017390 - L2 LINE L2 -557 2862 2514 2 1138 50 42 0 0 chr5 72519895 72519966 -80017293 + AT_rich Low_complexity Low_complexity 1 71 0 2 1138 201 292 15 30 chr5 72520223 72520290 -80016969 + L2c LINE L2 3257 3322 -65 2 1138 500 245 55 152 chr5 72520747 72520983 -80016276 - MLT2C1 LTR ERVL -3 394 182 2 1138 934 51 15 0 chr5 72520986 72521123 -80016136 + (TAGA)n Simple_repeat Simple_repeat 2 140 0 3 1138 1743 99 114 52 chr5 72521803 72521856 -80015403 - ORR1A2 LTR MaLR 0 327 287 3 1138 2302 158 17 32 chr5 72521856 72522267 -80014992 - Lx LINE L1 -2 6652 6248 3 1138 1743 99 114 52 chr5 72522267 72522521 -80014738 - ORR1A2 LTR MaLR -41 286 1 3 1138 312 200 20 10 chr5 72523324 72523425 -80013834 + (CA)n Simple_repeat Simple_repeat 1 102 0 3 1138 27 0 0 0 chr5 72523680 72523707 -80013552 + AT_rich Low_complexity Low_complexity 1 27 0 3 1138 244 305 108 48 chr5 72523971 72524157 -80013102 - MIR3 SINE MIR -9 199 3 3 1138 531 0 0 0 chr5 72524464 72524523 -80012736 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1138 509 257 76 49 chr5 72524794 72524978 -80012281 - B3A SINE B2 -5 193 5 3 1138 611 169 182 15 chr5 72524970 72525168 -80012091 + MTD-int LTR MaLR 1027 1257 -1 3 1138 1715 208 40 37 chr5 72525169 72525573 -80011686 + MTD LTR MaLR 1 405 -14 3 1138 1221 277 82 8 chr5 72525594 72525962 -80011297 + MTD LTR MaLR 1 395 -24 3 1138 2068 147 6 9 chr5 72525963 72526286 -80010973 - MTC LTR MaLR 0 421 100 3 1138 454 154 168 16 chr5 72526264 72526389 -80010870 + MTC-int LTR MaLR 1114 1257 -1 4 1138 308 293 68 17 chr5 72526390 72526508 -80010751 + MTC LTR MaLR 1 124 -297 4 1138 546 172 67 25 chr5 72526453 72526572 -80010687 - MTC LTR MaLR -297 124 1 4 1138 437 158 26 33 chr5 72526649 72526800 -80010459 + (TAGA)n Simple_repeat Simple_repeat 3 152 0 4 1138 416 256 103 40 chr5 72526871 72527167 -80010092 + RLTR12B LTR ERVK 164 507 -21 4 1138 383 194 83 6 chr5 72527196 72527352 -80009907 + (TAGA)n Simple_repeat Simple_repeat 2 169 0 4 1138 265 224 85 18 chr5 72527377 72527541 -80009718 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 4 1138 201 74 0 0 chr5 72528213 72528240 -80009019 + (CAA)n Simple_repeat Simple_repeat 1 27 0 4 1138 264 158 0 0 chr5 72528467 72528524 -80008735 + A-rich Low_complexity Low_complexity 1 57 0 4 1138 27 62 0 0 chr5 72533671 72533719 -80003540 + AT_rich Low_complexity Low_complexity 1 48 0 4 1138 332 191 134 34 chr5 72535479 72535598 -80001661 - L1M2 LINE L1 -2094 4049 3919 4 1138 207 362 53 0 chr5 72536462 72536556 -80000703 - MIRb SINE MIR -133 135 37 4 1138 637 227 116 20 chr5 72541542 72541740 -79995519 + L1_Mur3 LINE L1 348 564 -7164 4 1138 337 240 0 96 chr5 72541767 72542062 -79995197 + GA-rich Low_complexity Low_complexity 1 266 0 5 1138 4552 157 51 22 chr5 72542079 72543245 -79994014 + L1_Mur3 LINE L1 548 1730 -4150 4 1138 450 53 0 0 chr5 72543245 72543302 -79993957 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1138 4552 137 76 23 chr5 72543302 72543606 -79993653 + L1_Mur3 LINE L1 1731 2068 -3812 4 1138 309 89 0 0 chr5 72543606 72543651 -79993608 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1138 4552 137 76 23 chr5 72543651 72543708 -79993551 + L1_Mur3 LINE L1 2069 2128 -3752 4 1138 2486 238 53 103 chr5 72543895 72544422 -79992837 + Lx7 LINE L1 6775 7323 -373 5 1138 255 61 0 0 chr5 72544422 72544455 -79992804 + (ATTG)n Simple_repeat Simple_repeat 1 33 0 5 1138 2486 238 53 103 chr5 72544455 72544894 -79992365 + Lx7 LINE L1 7324 7692 -4 5 1138 436 275 310 11 chr5 72545472 72545483 -79991776 + L1MC3 LINE L1 5567 5577 -767 5 1138 330 26 0 0 chr5 72545483 72545522 -79991737 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1138 436 275 310 11 chr5 72545522 72545878 -79991381 + L1MC3 LINE L1 5578 6044 -300 5 1138 1136 283 131 34 chr5 72545925 72546002 -79991257 + L1MC3 LINE L1 6135 6205 -1580 5 1138 234 0 0 0 chr5 72546002 72546028 -79991231 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5 1138 1136 283 131 34 chr5 72546028 72546562 -79990697 + L1MC3 LINE L1 6206 6805 -980 5 1138 1091 214 24 0 chr5 72546568 72546778 -79990481 + B3 SINE B2 1 215 -1 5 1138 1183 85 0 0 chr5 72546912 72547065 -79990194 + B2_Mm2 SINE B2 2 154 -41 5 1138 2193 184 30 11 chr5 72547079 72547512 -79989747 + BGLII_B LTR ERVK 1 441 0 6 1138 1311 76 0 0 chr5 72547562 72547733 -79989526 + B2_Mm2 SINE B2 2 172 -23 6 1138 805 259 174 33 chr5 72547745 72548130 -79989129 + L1MC3 LINE L1 6954 7386 -399 5 1138 225 275 155 17 chr5 72548196 72548370 -79988889 + L1MC3 LINE L1 7571 7768 -17 5 1138 1255 62 0 0 chr5 72548509 72548655 -79988604 + B1_Mus2 SINE Alu 2 147 0 6 1138 240 65 0 0 chr5 72548788 72548819 -79988440 + B2_Mm2 SINE B2 28 58 -137 6 1138 423 132 11 46 chr5 72548794 72548881 -79988378 + B2_Mm1a SINE B2 110 193 0 6 1138 213 39 0 0 chr5 72548887 72548913 -79988346 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 6 1138 301 268 139 13 chr5 72549081 72549269 -79987990 + L1ME1 LINE L1 5666 5875 -299 6 1138 531 283 29 14 chr5 72549275 72549415 -79987844 + B1F SINE Alu 7 148 -1 6 1138 309 301 174 9 chr5 72549545 72549763 -79987496 + L1ME1 LINE L1 5902 6155 -24 6 1138 508 256 105 92 chr5 72554728 72555098 -79982161 + L1M5 LINE L1 3516 3890 -2256 6 1138 1533 307 89 24 chr5 72555381 72556166 -79981093 + L1M5 LINE L1 4432 5267 -879 6 1138 237 33 0 0 chr5 72556377 72556407 -79980852 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1138 603 178 8 41 chr5 72556893 72557016 -79980243 - PB1D7 SINE Alu -1 119 1 7 1138 291 266 0 0 chr5 72557875 72557939 -79979320 - MIR SINE MIR -81 181 118 7 1138 21 0 0 0 chr5 72559464 72559485 -79977774 + GC_rich Low_complexity Low_complexity 1 21 0 7 1138 204 40 0 0 chr5 72559573 72559598 -79977661 + (G)n Simple_repeat Simple_repeat 1 25 0 7 1138 29 0 0 0 chr5 72559827 72559856 -79977403 + AT_rich Low_complexity Low_complexity 1 29 0 7 1138 1510 73 16 0 chr5 72559873 72560064 -79977195 + B2_Mm2 SINE B2 1 194 -1 7 1138 594 63 0 0 chr5 72560397 72560476 -79976783 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 7 1138 506 63 13 0 chr5 72560875 72560954 -79976305 + (TG)n Simple_repeat Simple_repeat 2 81 0 7 1138 240 345 83 0 chr5 72560954 72561038 -79976221 - RSINE1 SINE B4 -41 124 34 7 1138 180 0 0 0 chr5 72561827 72561847 -79975412 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 7 1138 2034 162 76 5 chr5 72561853 72562220 -79975039 + ORR1B1 LTR MaLR 1 393 -1 8 1138 378 357 93 28 chr5 72562593 72562809 -79974450 - MLT1J2 LTR MaLR -182 266 37 8 1138 198 128 0 0 chr5 72562848 72562887 -79974372 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 8 1138 379 177 96 17 chr5 72563334 72563449 -79973810 - Lx5 LINE L1 -28 7022 6899 8 1138 770 176 58 14 chr5 72563775 72563913 -79973346 + B1_Mm SINE Alu 3 146 -1 8 1138 519 17 0 0 chr5 72563942 72564002 -79973257 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 8 1138 23 54 0 0 chr5 72564666 72564703 -79972556 + AT_rich Low_complexity Low_complexity 1 37 0 8 1138 3622 82 38 0 chr5 72565759 72566259 -79971000 + L1_Mus3 LINE L1 6120 6638 0 8 1138 864 165 0 0 chr5 72566541 72566699 -79970560 + GA-rich Low_complexity Low_complexity 1 158 0 8 1138 252 0 0 0 chr5 72566788 72566816 -79970443 + (CAG)n Simple_repeat Simple_repeat 3 30 0 8 1138 251 312 55 0 chr5 72567216 72567325 -79969934 + MER5B DNA MER1_type 1 115 -63 9 1138 180 0 0 0 chr5 72567335 72567355 -79969904 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 1138 625 205 30 77 chr5 72567565 72567734 -79969525 + RSINE1 SINE B4 5 165 0 9 1138 323 292 49 94 chr5 72567995 72568260 -79968999 - MER67D LTR ERV1 -210 304 52 9 1138 254 87 22 0 chr5 72569035 72569081 -79968178 + (TA)n Simple_repeat Simple_repeat 2 48 0 9 1138 831 256 173 3 chr5 72570081 72570387 -79966872 - MTE2b LTR MaLR 0 379 22 9 1138 22 35 0 0 chr5 72570772 72570801 -79966458 + AT_rich Low_complexity Low_complexity 1 29 0 9 1138 1658 26 5 0 chr5 72571155 72571347 -79965912 - B2_Mm1t SINE B2 0 193 1 9 1138 510 103 0 0 chr5 72571433 72571520 -79965739 + (TC)n Simple_repeat Simple_repeat 2 88 0 9 1138 267 314 36 146 chr5 72571697 72571817 -79965442 + MLT2D LTR ERVL 3 118 -296 9 1138 483 188 205 0 chr5 72571817 72571934 -79965325 + B1_Mur2 SINE Alu 1 141 -8 1 1138 267 314 36 146 chr5 72571934 72572115 -79965144 + MLT2D LTR ERVL 119 271 -143 9 1138 450 36 0 0 chr5 72572164 72572220 -79965039 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1138 273 312 110 16 chr5 72573688 72573815 -79963444 - B1F SINE Alu -1 148 10 1 1138 540 45 0 0 chr5 72574554 72574621 -79962638 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 1 1138 239 164 0 35 chr5 72574671 72574728 -79962531 + GA-rich Low_complexity Low_complexity 3 57 0 1 1138 365 0 22 0 chr5 72574834 72574879 -79962380 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1138 776 287 15 30 chr5 72574923 72575192 -79962067 - B4A SINE B4 -26 266 2 1 1138 409 94 0 0 chr5 72576152 72576216 -79961043 - RMER10A LTR ERVL -6 436 373 1 1138 1234 157 108 54 chr5 72576216 72576562 -79960697 + RMER17C LTR ERVK 20 381 -29 1 1138 225 0 0 0 chr5 72576562 72576587 -79960672 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1138 1131 43 0 0 chr5 72576587 72576726 -79960533 - B1_Mm SINE Alu -8 139 1 1 1138 1234 157 108 54 chr5 72576726 72576749 -79960510 + RMER17C LTR ERVK 382 409 -1 1 1138 913 198 34 181 chr5 72576749 72577173 -79960086 - RMER10A LTR ERVL -81 361 3 1 1138 355 340 0 0 chr5 72577795 72577889 -79959370 + RSINE1 SINE B4 3 96 -69 1 1138 530 129 0 0 chr5 72578327 72578412 -79958847 + RMER10B LTR ERVL 1 85 -313 1 1138 267 241 50 12 chr5 72578538 72578618 -79958641 + RLTR19-int LTR ERVK 4235 4317 -1820 1 1138 1180 152 0 0 chr5 72578664 72578861 -79958398 + RMER10B LTR ERVL 3 199 -199 1 1138 228 67 0 0 chr5 72578991 72579021 -79958238 + (GGA)n Simple_repeat Simple_repeat 1 30 0 1 1138 269 82 20 0 chr5 72579020 72579069 -79958190 + (CAAAAA)n Simple_repeat Simple_repeat 6 55 0 1 1138 290 26 0 25 chr5 72579246 72579286 -79957973 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1138 180 246 184 0 chr5 72579944 72580058 -79957201 + L2a LINE L2 2540 2674 -745 1 1138 2131 171 11 8 chr5 72580335 72580701 -79956558 + ORR1B2 LTR MaLR 1 367 0 1 1138 4620 248 49 24 chr5 72580706 72581313 -79955946 + ORR1B2-int LTR MaLR 19 642 -728 1 1138 592 229 42 28 chr5 72581313 72581457 -79955802 + B1_Mus2 SINE Alu 2 147 0 1 1138 4620 248 49 24 chr5 72581457 72582168 -79955091 + ORR1B2-int LTR MaLR 643 1369 -1 1 1138 2089 139 60 17 chr5 72582168 72582518 -79954741 + ORR1B2 LTR MaLR 1 365 -2 1 1138 1383 180 50 70 chr5 72582518 72583015 -79954244 - RLTR31B_Mm LTR ERVK 0 561 2 1 1138 2849 160 53 29 chr5 72583058 72583637 -79953622 + MT2B LTR ERVL 1 593 -8 1 1138 366 340 13 39 chr5 72583639 72583792 -79953467 + L2a LINE L2 3015 3163 -263 1 1138 186 315 0 64 chr5 72583899 72583977 -79953282 + L2a LINE L2 3317 3389 -37 1 1138 642 134 34 25 chr5 72584056 72584193 -79953066 + ORR1C2 LTR MaLR 257 394 0 1 1138 1029 233 24 24 chr5 72584193 72584444 -79952815 - ORR1D2 LTR MaLR -119 251 1 1 1138 986 250 251 37 chr5 72584444 72584873 -79952386 + Lx8 LINE L1 6833 7353 -120 1 1138 261 284 61 0 chr5 72584938 72585053 -79952206 + B3A SINE B2 1 168 -30 1 1138 243 0 0 0 chr5 72585056 72585083 -79952176 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1138 3009 268 65 48 chr5 72585133 72585418 -79951841 - Lx7 LINE L1 -637 7059 6770 1 1138 1531 44 16 0 chr5 72585418 72585601 -79951658 - B2_Mm2 SINE B2 -8 187 2 1 1138 3009 268 65 48 chr5 72585601 72586257 -79951002 - Lx7 LINE L1 -927 6769 6102 1 1138 1499 243 87 13 chr5 72586264 72586614 -79950645 - Lx7 LINE L1 -259 5621 5252 1 1138 306 0 0 0 chr5 72586614 72586648 -79950611 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1138 1499 243 87 13 chr5 72586648 72586747 -79950512 - Lx7 LINE L1 -629 5251 5140 1 1138 227 54 0 26 chr5 72586756 72586794 -79950465 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1 1138 663 282 69 17 chr5 72586798 72587148 -79950111 + Lx7 LINE L1 7082 7696 0 1 1138 865 215 75 84 chr5 72587701 72588072 -79949187 - RLTR9A LTR ERVK 0 368 1 1 1138 2095 116 0 57 chr5 72588588 72588687 -79948572 + ORR1A4 LTR MaLR 1 96 -233 1 1138 198 0 0 0 chr5 72588687 72588709 -79948550 + (TC)n Simple_repeat Simple_repeat 1 22 0 1 1138 369 0 0 0 chr5 72588709 72588749 -79948510 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1138 2095 116 0 57 chr5 72588749 72588997 -79948262 + ORR1A4 LTR MaLR 97 327 -2 1 1138 29 0 0 0 chr5 72589010 72589039 -79948220 + AT_rich Low_complexity Low_complexity 1 29 0 1 1138 3158 49 39 0 chr5 72589404 72589789 -79947470 + MTB LTR MaLR 1 400 0 1 1138 852 286 79 23 chr5 72589822 72589904 -79947355 - L1_Rod LINE L1 -30 5817 5733 1 1138 432 0 0 0 chr5 72589904 72589952 -79947307 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1138 261 0 0 0 chr5 72589952 72589980 -79947279 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1138 1125 253 50 15 chr5 72589980 72590325 -79946934 - L1_Rod LINE L1 -523 5777 5367 1 1138 888 82 0 0 chr5 72590537 72590659 -79946600 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 1 1138 4704 84 65 16 chr5 72590659 72591346 -79945913 - Lx LINE L1 -15 6639 5919 1 1138 305 47 0 23 chr5 72591779 72591823 -79945436 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1 1138 23 78 0 0 chr5 72592361 72592412 -79944847 + AT_rich Low_complexity Low_complexity 1 51 0 1 1138 248 241 14 166 chr5 72592890 72593029 -79944230 - MER5B DNA MER1_type -2 176 59 1 1138 237 51 26 0 chr5 72593785 72593824 -79943435 - B1_Mus2 SINE Alu -2 145 106 1 1138 225 0 0 0 chr5 72596277 72596302 -79940957 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 1138 950 219 53 5 chr5 72597059 72597265 -79939994 - B3 SINE B2 0 216 1 1 1138 294 29 0 0 chr5 72598150 72598185 -79939074 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1138 185 333 0 0 chr5 72598594 72598651 -79938608 + MER5A DNA MER1_type 52 108 -81 1 1138 205 186 23 0 chr5 72599373 72599416 -79937843 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1138 567 187 18 9 chr5 72599756 72599869 -79937390 + PB1D9 SINE Alu 1 114 -6 1 1138 738 225 58 21 chr5 72600732 72600744 -79936515 - B3A SINE B2 0 198 187 1 1138 221 0 35 0 chr5 72600744 72600773 -79936486 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1138 738 225 58 21 chr5 72600773 72600951 -79936308 - B3A SINE B2 -12 186 1 1 1138 218 229 80 78 chr5 72601055 72601152 -79936107 - MIRb SINE MIR -59 209 107 1 1138 357 24 0 0 chr5 72601874 72601916 -79935343 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1138 1196 61 0 0 chr5 72602485 72602632 -79934627 - B1_Mus1 SINE Alu 0 148 2 1 1138 271 294 18 30 chr5 72603643 72603808 -79933451 - L2 LINE L2 -779 2640 2478 1 1138 261 333 115 63 chr5 72603918 72604380 -79932879 - L2 LINE L2 -1869 1550 1065 1 1138 221 180 20 0 chr5 72604993 72605043 -79932216 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 1 1138 521 340 45 45 chr5 72605075 72605321 -79931938 + Tigger5 DNA MER2_type 4 249 -2157 1 1138 687 169 94 17 chr5 72605322 72605477 -79931782 + Tigger5 DNA MER2_type 2164 2333 -73 1 1138 3995 108 5 59 chr5 72605477 72606108 -79931151 + MT2B LTR ERVL 3 599 -2 1 1138 687 169 94 17 chr5 72606108 72606132 -79931127 + Tigger5 DNA MER2_type 2334 2357 -49 1 1138 446 134 0 0 chr5 72606138 72606205 -79931054 + B1_Mus2 SINE Alu 74 140 -7 1 1138 632 44 22 0 chr5 72606205 72606296 -79930963 + (CAGAGA)n Simple_repeat Simple_repeat 4 96 0 1 1138 327 265 17 17 chr5 72606343 72606462 -79930797 + (TA)n Simple_repeat Simple_repeat 1 119 0 1 1138 3280 40 28 0 chr5 72606598 72606998 -79930261 - RLTR10A LTR ERVK 0 411 1 1 1138 531 0 0 0 chr5 72608231 72608290 -79928969 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 1 1138 279 255 191 46 chr5 72608304 72608477 -79928782 - B3A SINE B2 0 198 1 1 1138 186 43 0 0 chr5 72608486 72608509 -79928750 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1138 737 138 0 15 chr5 72608622 72608754 -79928505 + CT-rich Low_complexity Low_complexity 1 130 0 1 1138 1717 252 147 20 chr5 72608754 72609312 -79927947 - Lx6 LINE L1 -28 7432 6804 1 1138 204 300 77 11 chr5 72610541 72610632 -79926627 - MIR SINE MIR -3 259 163 1 1138 1226 271 35 3 chr5 72611812 72612153 -79925106 + L1MA6 LINE L1 5949 6300 0 1 1138 236 79 0 73 chr5 72612386 72612427 -79924832 - L1_Mur1 LINE L1 -3013 2873 2836 1 1138 1365 286 72 24 chr5 72612455 72612953 -79924306 + RCHARR1 DNA MER1_type 1 522 -452 1 1138 744 139 74 0 chr5 72612959 72613081 -79924178 + B2_Mm2 SINE B2 2 132 -63 1 1138 423 0 0 0 chr5 72613092 72613139 -79924120 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1 1138 236 219 171 0 chr5 72613154 72613236 -79924023 + RCHARR1 DNA MER1_type 518 613 -361 1 1138 603 277 113 36 chr5 72613236 72613483 -79923776 - Lx6 LINE L1 -34 7426 7161 1 1138 363 189 35 35 chr5 72613522 72613637 -79923622 - Lx9 LINE L1 -1 7643 7529 1 142 825 196 210 17 chr5 72613644 72613991 -79923268 + RCHARR1 DNA MER1_type 561 974 0 1 1139 226 259 17 17 chr5 72614525 72614580 -79922679 - ORR1D2 LTR MaLR 0 359 305 1 1139 613 61 0 12 chr5 72614580 72614663 -79922596 + B2_Mm1t SINE B2 1 82 -111 1 1139 276 324 9 53 chr5 72614663 72614694 -79922565 + RSINE1 SINE B4 2 110 -55 1 1139 277 302 115 36 chr5 72614722 72614887 -79922372 - ORR1D2 LTR MaLR -192 182 5 1 1139 189 0 0 0 chr5 72615115 72615136 -79922123 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1139 489 17 0 0 chr5 72615136 72615193 -79922066 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1139 725 289 88 17 chr5 72615193 72615403 -79921856 + L1_Mur3 LINE L1 2997 3226 -2654 1 1139 324 0 0 0 chr5 72615403 72615439 -79921820 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1139 725 289 88 17 chr5 72615439 72615650 -79921609 + L1_Mur3 LINE L1 3227 3448 -2432 1 1139 349 263 92 50 chr5 72615661 72615781 -79921478 - PB1 SINE Alu -2 125 1 1 1139 910 153 0 30 chr5 72616722 72616857 -79920402 - B1_Mur3 SINE Alu -18 131 1 1 1139 331 281 43 29 chr5 72617157 72617296 -79919963 + B1F SINE Alu 1 141 -8 1 1139 648 185 58 57 chr5 72617836 72618038 -79919221 - B3 SINE B2 -3 192 1 1 1139 21 36 0 0 chr5 72618542 72618570 -79918689 + AT_rich Low_complexity Low_complexity 1 28 0 1 1139 1611 62 5 5 chr5 72619265 72619459 -79917800 - B2_Mm2 SINE B2 0 195 2 1 1139 219 350 20 20 chr5 72619643 72619745 -79917514 - MIRc SINE MIR -161 107 6 1 1139 21 0 0 0 chr5 72621024 72621045 -79916214 + AT_rich Low_complexity Low_complexity 1 21 0 1 1139 23 54 0 0 chr5 72621280 72621317 -79915942 + AT_rich Low_complexity Low_complexity 1 37 0 1 1139 283 302 0 99 chr5 72621805 72621920 -79915339 - ID4 SINE ID -43 109 5 1 1139 354 23 0 0 chr5 72622747 72622790 -79914469 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1139 199 229 0 10 chr5 72623183 72623235 -79914024 + MIR SINE MIR 65 114 -154 1 1139 8329 49 1 2 chr5 72624038 72625218 -79912041 - L1Md_F2 LINE L1 0 6582 5404 1 1139 264 286 0 0 chr5 72627039 72627088 -79910171 - B1F1 SINE Alu -98 51 3 2 1139 23 0 0 0 chr5 72627124 72627147 -79910112 + AT_rich Low_complexity Low_complexity 1 23 0 2 1139 7208 66 6 8 chr5 72627156 72628566 -79908693 + L1VL2 LINE L1 527 1932 -1683 2 1139 3355 75 26 0 chr5 72628559 72629011 -79908248 + L1VL2 LINE L1 3150 3613 -2 2 1139 664 349 60 0 chr5 72629136 72629405 -79907854 - MER2 DNA MER2_type -60 285 1 2 1139 1711 27 16 0 chr5 72629686 72629874 -79907385 - B2_Mm1a SINE B2 -1 192 2 2 1139 195 42 0 0 chr5 72630102 72630126 -79907133 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 1139 1076 119 0 12 chr5 72630126 72630287 -79906972 - B2_Mm2 SINE B2 -35 160 2 2 1139 26 30 0 0 chr5 72630289 72630322 -79906937 + AT_rich Low_complexity Low_complexity 1 33 0 2 1139 1075 103 13 27 chr5 72630618 72630768 -79906491 - B1_Mur3 SINE Alu 0 149 2 2 1139 195 42 0 0 chr5 72630909 72630933 -79906326 + (C)n Simple_repeat Simple_repeat 1 24 0 2 1139 23 0 0 0 chr5 72631097 72631120 -79906139 + AT_rich Low_complexity Low_complexity 1 23 0 2 1139 346 318 117 36 chr5 72632081 72632192 -79905067 - B1F SINE Alu -29 120 1 2 1139 807 179 198 16 chr5 72632235 72632417 -79904842 - B3 SINE B2 0 216 2 2 1139 295 23 0 43 chr5 72632473 72632519 -79904740 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1139 1182 62 0 34 chr5 72632519 72632657 -79904602 - B1_Mus1 SINE Alu -10 138 1 2 1139 441 0 0 0 chr5 72633115 72633164 -79904095 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1139 21 0 0 0 chr5 72633252 72633273 -79903986 + AT_rich Low_complexity Low_complexity 1 21 0 2 1139 267 264 31 4 chr5 72633601 72633676 -79903583 - B1F SINE Alu -26 123 43 2 1139 342 278 0 0 chr5 72634356 72634449 -79902810 + B1F SINE Alu 24 116 -4 2 1139 38 51 0 0 chr5 72634636 72634695 -79902564 + AT_rich Low_complexity Low_complexity 1 59 0 2 1139 3148 66 0 89 chr5 72635794 72636185 -79901074 + L1_Mus1 LINE L1 6156 6508 -59 2 1139 1253 41 7 0 chr5 72636185 72636331 -79900928 - B1_Mus2 SINE Alu 0 147 1 2 1139 3148 66 0 89 chr5 72636331 72636390 -79900869 + L1_Mus1 LINE L1 6509 6566 -1 2 1139 450 188 6 12 chr5 72637687 72637854 -79899405 + GA-rich Low_complexity Low_complexity 1 166 0 2 1139 1151 155 98 20 chr5 72638682 72638886 -79898373 + URR1B DNA MER1_type 2 221 -4 2 1139 689 175 13 110 chr5 72639420 72639574 -79897685 - B1_Mur4 SINE Alu -5 145 7 2 1139 231 36 0 0 chr5 72639656 72639684 -79897575 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1139 397 303 125 45 chr5 72639705 72640016 -79897243 - L1MC3 LINE L1 -23 7762 7427 2 1139 344 333 0 0 chr5 72640112 72640217 -79897042 + MIR SINE MIR 19 123 -139 2 1139 685 304 70 28 chr5 72640457 72640670 -79896589 + B4A SINE B4 8 229 -63 2 1139 269 296 25 0 chr5 72640697 72640778 -79896481 + (CATA)n Simple_repeat Simple_repeat 4 86 0 2 1139 1422 100 16 16 chr5 72641808 72642001 -79895258 + B2_Mm2 SINE B2 3 195 0 2 1139 363 357 0 8 chr5 72642037 72642164 -79895095 - MER20 DNA MER1_type 0 219 94 2 1139 186 43 0 0 chr5 72642206 72642229 -79895030 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1139 260 391 17 0 chr5 72642272 72642387 -79894872 + MIRc SINE MIR 9 125 -143 2 1139 314 318 0 15 chr5 72642400 72642531 -79894728 + L1M2 LINE L1 3802 3930 -2213 2 1139 516 254 88 0 chr5 72642625 72642739 -79894520 + ID_B1 SINE B4 99 222 -2 2 1139 3454 46 2 2 chr5 72642813 72643209 -79894050 + MTA_Mm LTR MaLR 1 396 0 2 1139 471 35 0 0 chr5 72643391 72643448 -79893811 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1139 970 171 182 0 chr5 72643717 72643904 -79893355 - URR1B DNA MER1_type -4 221 1 2 1139 509 295 178 28 chr5 72643968 72644362 -79892897 - L2 LINE L2 -541 2878 2426 2 1139 234 294 167 19 chr5 72644459 72644615 -79892644 - L2a LINE L2 -157 3269 3091 2 1139 2124 164 55 33 chr5 72644736 72645133 -79892126 - MTC LTR MaLR -7 414 9 2 1139 236 159 46 31 chr5 72645170 72645235 -79892024 - L2 LINE L2 -1104 2315 2250 2 1139 248 347 13 0 chr5 72645282 72645357 -79891902 + ID4_ SINE ID 8 83 0 2 1139 419 0 20 0 chr5 72645362 72645413 -79891846 + (CATA)n Simple_repeat Simple_repeat 4 55 0 2 1139 619 281 149 51 chr5 72645414 72645668 -79891591 + B4 SINE B4 14 292 0 2 1139 1382 161 13 18 chr5 72648929 72649156 -79888103 + URR1A DNA MER1_type 1 226 0 2 1139 243 333 67 57 chr5 72649349 72649454 -79887805 - L2c LINE L2 -11 3376 3271 2 1139 894 222 166 15 chr5 72650272 72650537 -79886722 - MTEa LTR MaLR -12 367 63 2 1139 342 153 115 14 chr5 72650573 72650651 -79886608 - MTEa LTR MaLR -288 91 7 2 1139 597 165 12 10 chr5 72651439 72651545 -79885714 + RSINE1 SINE B4 1 99 -193 2 1139 1167 71 0 0 chr5 72651546 72651701 -79885558 + B2_Mm1t SINE B2 37 191 -2 2 1139 650 167 0 0 chr5 72651804 72651906 -79885353 + B2_Mm2 SINE B2 1 102 -93 2 1139 255 152 0 0 chr5 72651906 72651952 -79885307 + A-rich Low_complexity Low_complexity 1 46 0 2 1139 357 338 0 0 chr5 72651952 72652032 -79885227 + RSINE1 SINE B4 86 165 0 2 1139 21 36 0 0 chr5 72652578 72652606 -79884653 + AT_rich Low_complexity Low_complexity 1 28 0 2 1139 2307 245 38 14 chr5 72652618 72653187 -79884072 - Lx5 LINE L1 -1 7049 6510 2 1139 394 304 27 0 chr5 72654677 72654789 -79882470 - PB1D9 SINE Alu -2 118 4 2 1139 844 159 65 0 chr5 72654863 72655001 -79882258 - B1_Mus2 SINE Alu 0 147 1 2 1139 6459 70 17 12 chr5 72656048 72656882 -79880377 - L1_Mus3 LINE L1 -2 6636 5799 2 1139 200 213 0 0 chr5 72658851 72658898 -79878361 + T-rich Low_complexity Low_complexity 1 47 0 2 1139 946 162 7 13 chr5 72658899 72659049 -79878210 - B1_Mur4 SINE Alu -1 149 1 2 1139 290 384 20 33 chr5 72659556 72659707 -79877552 - MER5B DNA MER1_type -23 155 7 2 1139 350 353 15 0 chr5 72659947 72660080 -79877179 + MER46C DNA MER2_type 75 209 -129 2 1139 25 31 0 0 chr5 72661028 72661060 -79876199 + AT_rich Low_complexity Low_complexity 1 32 0 2 1139 242 176 78 0 chr5 72661597 72661648 -79875611 + RSINE1 SINE B4 28 82 -83 2 1139 471 342 31 31 chr5 72661953 72662149 -79875110 + MER20 DNA MER1_type 16 211 -8 2 1139 794 204 2 2 chr5 72662280 72662840 -79874419 + (TG)n Simple_repeat Simple_repeat 1 560 0 2 1139 882 174 0 5 chr5 72662867 72663316 -79873943 + (TG)n Simple_repeat Simple_repeat 1 446 0 2 1139 245 343 43 0 chr5 72663325 72663395 -79873864 - B4 SINE B4 -5 287 215 2 1139 203 105 0 50 chr5 72663401 72663441 -79873818 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 2 1139 324 312 35 105 chr5 72663503 72663675 -79873584 - B4 SINE B4 -131 161 2 2 1139 844 130 61 68 chr5 72663856 72664004 -79873255 - B1_Mur3 SINE Alu 0 149 3 2 1139 270 185 37 0 chr5 72664007 72664061 -79873198 - L1MA6 LINE L1 -121 6179 6124 2 1139 1443 81 16 5 chr5 72664209 72664396 -79872863 + B2_Mm2 SINE B2 2 190 -5 2 1139 762 317 73 11 chr5 72665088 72665445 -79871814 + MER82 DNA MER2_type 25 403 -250 2 1139 440 135 160 0 chr5 72665445 72665544 -79871715 + B1_Mus2 SINE Alu 9 121 -26 2 1139 568 115 0 0 chr5 72665543 72665621 -79871638 + B1_Mur4 SINE Alu 66 143 -7 2 1139 522 139 0 0 chr5 72665624 72665710 -79871549 + (TAG)n Simple_repeat Simple_repeat 1 86 0 2 1139 258 256 0 0 chr5 72665873 72665951 -79871308 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 1139 21 0 0 0 chr5 72666069 72666090 -79871169 + AT_rich Low_complexity Low_complexity 1 21 0 2 1139 580 285 0 90 chr5 72667101 72667208 -79870051 - B3A SINE B2 -22 176 80 2 1139 1214 180 13 9 chr5 72667208 72667432 -79869827 - URR1B DNA MER1_type 0 225 1 2 1139 580 285 0 90 chr5 72667432 72667513 -79869746 - B3A SINE B2 -119 79 5 2 1139 195 204 0 0 chr5 72668727 72668771 -79868488 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 2 1139 2097 169 10 42 chr5 72669283 72669757 -79867502 - ORR1A3-int LTR MaLR -1356 436 1 2 1139 1995 157 25 25 chr5 72669761 72670087 -79867172 - ORR1A3 LTR MaLR 0 326 1 2 1139 1409 206 42 16 chr5 72670097 72670403 -79866856 + MTD LTR MaLR 90 403 -16 2 1139 344 167 14 0 chr5 72671083 72671155 -79866104 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1139 222 118 0 0 chr5 72671788 72671822 -79865437 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2 1139 191 167 0 23 chr5 72672044 72672087 -79865172 + CT-rich Low_complexity Low_complexity 2 43 0 2 1139 602 250 59 0 chr5 72672093 72672229 -79865030 - B1F SINE Alu -5 144 1 2 1139 188 270 0 160 chr5 72672642 72672717 -79864542 + MIR SINE MIR 62 124 -138 2 1139 319 351 57 46 chr5 72672834 72673028 -79864231 - MLT1A0 LTR MaLR -159 206 11 2 1139 335 250 108 20 chr5 72673028 72673130 -79864129 + MIR SINE MIR 125 235 -27 2 1139 505 253 111 41 chr5 72673630 72673679 -79863580 + CYRA11_Mm Unknown Y-chromosome 125 291 -326 2 1139 886 159 18 35 chr5 72673679 72673848 -79863411 - URR1A DNA MER1_type 0 226 61 2 1139 505 253 111 41 chr5 72673848 72673873 -79863386 + CYRA11_Mm Unknown Y-chromosome 292 384 -233 2 1139 183 374 65 24 chr5 72674048 72674218 -79863041 - MIRc SINE MIR -66 202 26 2 1139 833 234 46 54 chr5 72674322 72674562 -79862697 - RMER12 LTR ERVK -127 1195 958 2 1139 318 106 0 0 chr5 72674581 72674628 -79862631 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 2 1139 4182 136 51 23 chr5 72674633 72675380 -79861879 - RMER12 LTR ERVK -554 768 1 2 1139 206 229 14 0 chr5 72676019 72676089 -79861170 + A-rich Low_complexity Low_complexity 4 74 0 2 1139 1175 263 65 34 chr5 72677424 72677837 -79859422 - L1_Rod LINE L1 -112 5735 5310 2 1139 1040 31 124 0 chr5 72677837 72677966 -79859293 + B1_Mus2 SINE Alu 3 147 0 2 1139 279 304 68 10 chr5 72678294 72678397 -79858862 - ORR1E LTR MaLR -250 109 1 2 1139 279 232 27 68 chr5 72678568 72678642 -79858617 + ID4_ SINE ID 2 72 -11 2 1139 254 296 14 0 chr5 72678648 72678719 -79858540 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1139 292 274 34 17 chr5 72678763 72678882 -79858377 - Lx9 LINE L1 -20 7624 7504 2 1139 277 196 183 19 chr5 72678926 72679030 -79858229 + L1_Mur3 LINE L1 5412 5532 -348 3 1139 1210 56 0 27 chr5 72679030 72679178 -79858081 - B1_Mus2 SINE Alu -3 144 1 3 1139 21 0 0 0 chr5 72681060 72681081 -79856178 + AT_rich Low_complexity Low_complexity 1 21 0 3 1139 2497 133 43 0 chr5 72681299 72681675 -79855584 - ORR1B1 LTR MaLR 0 394 3 3 1139 245 386 34 26 chr5 72681843 72681960 -79855299 + L2b LINE L2 3224 3341 -34 3 1139 1556 79 0 14 chr5 72682363 72682582 -79854677 + L1VL4 LINE L1 615 830 -5472 3 1139 211 54 54 0 chr5 72683249 72683286 -79853973 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1139 8008 79 19 65 chr5 72683364 72684514 -79852745 + MTA_Mm-int LTR MaLR 2 1098 0 3 1139 3293 59 15 3 chr5 72684514 72684905 -79852354 + MTA_Mm LTR MaLR 1 396 0 3 1139 414 0 0 0 chr5 72685153 72685199 -79852060 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1139 197 65 32 0 chr5 72685486 72685517 -79851742 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1139 8186 44 15 2 chr5 72685742 72686848 -79850411 - L1Md_F3 LINE L1 -1 6583 5496 3 1139 480 275 122 6 chr5 72687372 72687544 -79849715 - MLT1A1 LTR MaLR 0 408 217 3 1139 23 0 0 29 chr5 72687844 72687861 -79849398 + AT_rich Low_complexity Low_complexity 1 17 0 3 1139 581 286 13 20 chr5 72687861 72688011 -79849248 - B1F SINE Alu 0 149 1 3 1139 23 0 0 29 chr5 72688011 72688027 -79849232 + AT_rich Low_complexity Low_complexity 1 16 0 3 1139 32 0 0 0 chr5 72689967 72689999 -79847260 + AT_rich Low_complexity Low_complexity 1 32 0 3 1139 1406 89 17 0 chr5 72690823 72691002 -79846257 - B2_Mm2 SINE B2 -12 183 2 3 1139 25 83 0 0 chr5 72691170 72691230 -79846029 + AT_rich Low_complexity Low_complexity 1 60 0 3 1139 21 0 0 0 chr5 72691271 72691292 -79845967 + AT_rich Low_complexity Low_complexity 1 21 0 3 1139 1145 186 29 5 chr5 72694420 72694625 -79842634 + URR1A DNA MER1_type 7 216 -10 3 1139 252 0 0 0 chr5 72695991 72696019 -79841240 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1139 452 191 12 0 chr5 72696603 72696687 -79840572 - U6 snRNA snRNA 0 107 23 3 1139 250 353 68 56 chr5 72696913 72697162 -79840097 + L2 LINE L2 1986 2237 -1182 3 1139 219 374 30 0 chr5 72697180 72697279 -79839980 + L2 LINE L2 2329 2430 -989 3 1139 484 290 49 47 chr5 72697615 72697825 -79839434 - MTEb LTR MaLR -20 359 139 3 1139 738 301 51 64 chr5 72699245 72699540 -79837719 + B4 SINE B4 2 292 0 3 1139 307 253 13 0 chr5 72699976 72700051 -79837208 - ID4_ SINE ID -1 82 7 3 1139 311 298 75 32 chr5 72700423 72700624 -79836635 - MER102a DNA MER1_type -39 291 72 3 1139 207 139 0 0 chr5 72701085 72701121 -79836138 + (GGAA)n Simple_repeat Simple_repeat 4 39 0 3 1139 539 15 0 14 chr5 72701734 72701803 -79835456 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1139 200 208 0 0 chr5 72701964 72702012 -79835247 + A-rich Low_complexity Low_complexity 2 49 0 3 1139 214 352 78 60 chr5 72702626 72702792 -79834467 - L2 LINE L2 -1979 1440 1272 3 1139 4839 206 72 19 chr5 72704935 72706076 -79831183 + Lx9 LINE L1 6443 7643 -1 3 1139 187 79 26 26 chr5 72706899 72706938 -79830321 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1139 218 371 35 28 chr5 72708027 72708171 -79829088 + L3 LINE CR1 4103 4247 -242 3 1139 191 152 0 21 chr5 72708247 72708294 -79828965 + CT-rich Low_complexity Low_complexity 4 49 0 3 1139 21 57 0 0 chr5 72708967 72709002 -79828257 + AT_rich Low_complexity Low_complexity 1 35 0 3 1139 185 376 34 73 chr5 72709355 72709533 -79827726 + MIRc SINE MIR 36 206 -62 3 1139 292 200 61 24 chr5 72709580 72709662 -79827597 + B4 SINE B4 2 86 -206 3 1139 357 254 161 16 chr5 72709688 72709812 -79827447 + B3A SINE B2 1 142 -56 3 1139 1465 81 32 0 chr5 72710035 72710220 -79827039 + B2_Mm2 SINE B2 4 194 -1 3 1139 324 0 0 0 chr5 72711226 72711262 -79825997 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 1139 230 254 25 27 chr5 72711589 72711670 -79825589 - ID4_ SINE ID 0 83 1 3 1139 22 70 0 0 chr5 72712593 72712636 -79824623 + AT_rich Low_complexity Low_complexity 1 43 0 3 1139 258 32 0 0 chr5 72712902 72712933 -79824326 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 1139 2433 75 10 3 chr5 72712933 72713242 -79824017 - L1_Mus3 LINE L1 -6 6632 6322 3 1139 2612 36 0 0 chr5 72713540 72713845 -79823414 + L1Md_F2 LINE L1 5789 6093 -489 3 1139 1135 195 24 9 chr5 72716126 72716338 -79820921 + B3 SINE B2 2 216 0 3 1139 854 299 35 25 chr5 72716349 72716703 -79820556 + L1MB7 LINE L1 5308 5686 -498 3 1139 384 300 78 78 chr5 72716729 72717025 -79820234 + L1MB7 LINE L1 5868 6163 -21 3 1139 197 457 55 18 chr5 72717552 72717717 -79819542 - L4 LINE RTE -729 1300 1130 3 1139 232 25 75 0 chr5 72717918 72717958 -79819301 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1139 372 264 0 0 chr5 72719010 72719094 -79818165 - B1F SINE Alu -36 84 1 3 1139 589 270 142 17 chr5 72719124 72719468 -79817791 + L1MB5 LINE L1 5724 6116 -67 3 1139 219 139 0 0 chr5 72720207 72720243 -79817016 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 3 1139 260 307 46 30 chr5 72723436 72723567 -79813692 + MTEa LTR MaLR 247 379 0 3 1139 498 114 0 0 chr5 72725594 72725682 -79811577 + (TGG)n Simple_repeat Simple_repeat 1 88 0 3 1139 3186 48 64 0 chr5 72728165 72728541 -79808718 + MTB LTR MaLR 1 400 0 3 1139 573 252 8 22 chr5 72728736 72728870 -79808389 - ID_B1 SINE B4 -5 219 88 3 1139 435 119 0 0 chr5 72729104 72729171 -79808088 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1139 1139 77 0 40 chr5 72732436 72732584 -79804675 + B1_Mus1 SINE Alu 2 143 -5 3 1139 333 0 0 0 chr5 72732587 72732624 -79804635 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 3 1139 222 284 0 69 chr5 72733362 72733434 -79803825 - MIRc SINE MIR -124 144 78 3 1139 247 257 66 26 chr5 72733775 72733851 -79803408 - ID4 SINE ID -4 79 1 3 1139 1188 274 130 34 chr5 72734454 72734899 -79802360 + RCHARR1 DNA MER1_type 1 488 -486 3 1139 853 79 23 16 chr5 72734885 72735013 -79802246 - B2_Mm2 SINE B2 -7 188 60 3 1139 9823 55 0 8 chr5 72735655 72735977 -79801282 + L1Md_F2 LINE L1 4381 4698 -1185 3 1139 3456 24 39 0 chr5 72735977 72736358 -79800901 - MTA_Mm LTR MaLR 0 396 1 3 1139 9665 37 3 2 chr5 72736360 72737455 -79799804 - MTA_Mm-int LTR MaLR -2 1096 1 3 1139 3456 24 39 0 chr5 72737455 72737836 -79799423 - MTA_Mm LTR MaLR 0 396 1 3 1139 9823 55 0 8 chr5 72737836 72738725 -79798534 + L1Md_F2 LINE L1 4699 5584 -299 3 1139 8907 33 0 15 chr5 72738725 72739735 -79797524 + L1Md_F2 LINE L1 5587 6581 -1 3 1139 201 74 0 0 chr5 72739752 72739779 -79797480 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1139 451 364 15 25 chr5 72739802 72740002 -79797257 + MLT1A LTR MaLR 177 374 0 3 1139 771 324 63 21 chr5 72740546 72740880 -79796379 + MLT1A0 LTR MaLR 17 364 -1 3 1139 1329 174 14 5 chr5 72743020 72743240 -79794019 + URR1B DNA MER1_type 2 223 -2 3 1139 727 213 0 7 chr5 72743692 72743834 -79793425 + B1_Mur1 SINE Alu 9 149 0 3 1140 301 306 54 9 chr5 72746944 72747056 -79790203 - MIRc SINE MIR -100 168 52 3 1140 785 288 100 7 chr5 72748676 72748977 -79788282 + MER2 DNA MER2_type 17 345 0 3 1140 309 322 70 84 chr5 72749928 72750155 -79787104 - MamRep564 Unknown Unknown -89 268 45 3 1140 184 200 91 0 chr5 72750864 72750919 -79786340 + L3 LINE CR1 4424 4483 -6 3 1140 206 105 0 26 chr5 72751749 72751788 -79785471 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 3 1140 221 0 0 33 chr5 72752000 72752030 -79785229 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1140 1223 279 110 20 chr5 72752645 72753135 -79784124 + RMER5 LTR ERV1 1 534 0 3 1140 651 285 20 16 chr5 72753307 72753594 -79783665 + L1ME1 LINE L1 4872 5143 -1000 3 1140 357 24 0 0 chr5 72753643 72753685 -79783574 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1140 25 51 0 0 chr5 72753960 72753999 -79783260 + AT_rich Low_complexity Low_complexity 1 39 0 3 1140 581 161 88 0 chr5 72754163 72754300 -79782959 - Lx9 LINE L1 -1 7643 7495 3 1140 4991 40 0 0 chr5 72754305 72754862 -79782397 + L1Md_T LINE L1 6026 6582 0 3 1140 699 203 35 14 chr5 72754862 72755007 -79782252 + Lx9 LINE L1 7316 7463 -181 3 1140 1065 301 42 20 chr5 72755033 72755531 -79781728 + L1ME1 LINE L1 5521 6029 -150 3 1140 299 302 29 7 chr5 72755874 72756014 -79781245 - L1M4 LINE L1 -1132 5014 4872 3 1140 280 247 47 0 chr5 72756328 72756413 -79780846 + L1MA5 LINE L1 6212 6300 0 3 1140 27 29 0 0 chr5 72757451 72757485 -79779774 + AT_rich Low_complexity Low_complexity 1 34 0 3 1140 336 324 9 37 chr5 72757964 72758073 -79779186 - MER20 DNA MER1_type -79 140 35 3 1140 4545 34 2 2 chr5 72758247 72758756 -79778503 - L1Md_F2 LINE L1 0 6582 6074 3 1140 373 335 135 25 chr5 72758853 72759245 -79778014 + Lx8 LINE L1 7030 7464 -9 3 1140 204 347 54 34 chr5 72760193 72760342 -79776917 - MIRb SINE MIR -87 181 30 3 1140 301 213 27 0 chr5 72760514 72760589 -79776670 + 5S rRNA rRNA 14 90 -31 3 1140 948 254 20 10 chr5 72760656 72760859 -79776400 - B3 SINE B2 -7 209 5 3 1140 23 0 0 0 chr5 72763512 72763535 -79773724 + AT_rich Low_complexity Low_complexity 1 23 0 3 1140 2700 37 3 0 chr5 72763637 72763958 -79773301 - L1Md_T LINE L1 -493 6089 5768 3 1140 4099 50 2 40 chr5 72763958 72764463 -79772796 + L1Md_F2 LINE L1 6091 6582 0 3 1140 211 304 17 57 chr5 72767122 72767272 -79769987 - MIR SINE MIR -122 146 1 3 1140 565 107 0 12 chr5 72768112 72768197 -79769062 - B2_Mm2 SINE B2 -106 89 6 3 1140 236 306 70 35 chr5 72769589 72769704 -79767555 + L2b LINE L2 3226 3344 -31 3 1140 627 156 14 21 chr5 72770215 72770359 -79766900 + L1_Mus4 LINE L1 6494 6636 0 3 1140 454 291 31 19 chr5 72770697 72770858 -79766401 + RSINE1 SINE B4 1 163 -2 4 1140 221 294 15 0 chr5 72772292 72772360 -79764899 + GA-rich Low_complexity Low_complexity 3 71 0 4 1140 21 0 0 0 chr5 72772714 72772735 -79764524 + AT_rich Low_complexity Low_complexity 1 21 0 4 1140 322 223 52 41 chr5 72773025 72773149 -79764110 + MLT1B LTR MaLR 261 372 -18 4 1140 396 0 0 0 chr5 72773643 72773687 -79763572 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1140 32 26 0 0 chr5 72773974 72774013 -79763246 + AT_rich Low_complexity Low_complexity 1 39 0 4 1140 313 117 0 32 chr5 72774050 72774112 -79763147 + (TTTC)n Simple_repeat Simple_repeat 4 63 0 4 1140 910 108 0 19 chr5 72774112 72774273 -79762986 + (TTC)n Simple_repeat Simple_repeat 2 159 0 4 1140 297 230 0 0 chr5 72776498 72776572 -79760687 + (TATG)n Simple_repeat Simple_repeat 2 75 0 4 1140 990 167 0 0 chr5 72776573 72776753 -79760506 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1140 722 293 13 21 chr5 72777446 72777680 -79759579 + MER2 DNA MER2_type 102 333 -12 4 1140 1925 147 70 13 chr5 72777837 72778214 -79759045 + MTB_Mm LTR MaLR 1 421 0 4 1140 735 265 9 71 chr5 72778348 72778559 -79758700 - B3A SINE B2 0 198 1 4 1140 180 0 0 0 chr5 72778643 72778663 -79758596 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1140 306 298 108 51 chr5 72778819 72779232 -79758027 - MLT1D LTR MaLR 0 505 1 4 1140 252 0 0 0 chr5 72779412 72779440 -79757819 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1140 993 100 0 0 chr5 72779440 72779699 -79757560 + (GA)n Simple_repeat Simple_repeat 1 259 0 4 1140 415 261 56 80 chr5 72779708 72779833 -79757426 - B1F SINE Alu -14 135 14 4 1140 1655 289 81 92 chr5 72780439 72780925 -79756334 - MER45R DNA Tip100 -73 1508 1016 4 1140 704 236 89 33 chr5 72780925 72781105 -79756154 - B3A SINE B2 -6 192 3 4 1140 1655 289 81 92 chr5 72781105 72781184 -79756075 - MER45R DNA Tip100 -566 1015 945 4 1140 643 269 0 0 chr5 72781184 72781329 -79755930 - B1F SINE Alu 0 149 5 4 1140 1655 289 81 92 chr5 72781329 72781930 -79755329 - MER45R DNA Tip100 -637 944 355 4 1140 1053 16 0 0 chr5 72782316 72782439 -79754820 + (TC)n Simple_repeat Simple_repeat 2 124 0 4 1140 321 93 0 0 chr5 72782525 72782579 -79754680 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 4 1140 955 81 0 0 chr5 72782579 72782703 -79754556 - B1_Mus2 SINE Alu -22 125 2 4 1140 441 246 0 119 chr5 72782592 72782726 -79754533 - MT2B LTR ERVL -337 264 147 4 1140 189 0 0 0 chr5 72782972 72782993 -79754266 + (GGAGA)n Simple_repeat Simple_repeat 3 23 0 4 1140 1200 111 0 0 chr5 72782993 72783173 -79754086 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1140 293 293 38 66 chr5 72784061 72784167 -79753092 + ID_B1 SINE B4 8 110 -114 4 1140 245 324 66 33 chr5 72784680 72784862 -79752397 - ORR1C2 LTR MaLR -196 188 1 4 1140 4440 88 9 5 chr5 72785431 72786003 -79751256 + L1Md_T LINE L1 6009 6582 0 4 1140 683 226 115 31 chr5 72788175 72788367 -79748892 + ID_B1 SINE B4 17 224 0 4 1140 720 319 63 16 chr5 72788373 72788628 -79748631 + B4 SINE B4 1 267 -25 4 1140 405 0 0 0 chr5 72788632 72788677 -79748582 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1140 978 278 266 28 chr5 72789068 72789461 -79747798 + RMER5 LTR ERV1 48 534 0 4 1140 6215 35 0 5 chr5 72789587 72790642 -79746617 + L1Md_F3 LINE L1 5135 6184 -400 4 1140 322 278 29 58 chr5 72790642 72790745 -79746514 + B1F2 SINE Alu 37 136 -13 4 1140 342 0 0 0 chr5 72790745 72790783 -79746476 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 4 1140 190 338 0 38 chr5 72791228 72791308 -79745951 + L2a LINE L2 2318 2394 -1025 4 1140 203 344 10 59 chr5 72791640 72791742 -79745517 + L2a LINE L2 3316 3412 -14 4 1140 486 224 148 22 chr5 72791750 72791933 -79745326 - B3 SINE B2 -7 209 4 4 1140 370 325 26 7 chr5 72792001 72792153 -79745106 + MER57-int LTR ERV1 7151 7305 -232 4 1140 389 265 8 72 chr5 72793114 72793267 -79743992 + ORR1E LTR MaLR 4 151 -219 4 1140 655 264 111 58 chr5 72793326 72793740 -79743519 + MER57A-int LTR ERV1 5717 6040 -147 4 1140 425 19 19 0 chr5 72795310 72795364 -79741895 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1140 295 325 94 21 chr5 72795371 72795541 -79741718 - B4 SINE B4 -16 276 88 4 1140 305 352 24 0 chr5 72795586 72795711 -79741548 + Charlie2a DNA MER1_type 170 297 -2564 4 1140 788 218 0 0 chr5 72796491 72796633 -79740626 - URR1B DNA MER1_type -76 149 8 4 1140 1389 70 0 16 chr5 72796654 72796843 -79740416 + L1Md_F2 LINE L1 6385 6570 -12 4 1140 279 0 0 0 chr5 72797249 72797280 -79739979 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 1140 523 127 8 33 chr5 72797280 72797402 -79739857 + (CA)n Simple_repeat Simple_repeat 2 120 0 4 1140 458 312 72 46 chr5 72797466 72797815 -79739444 + L1ME1 LINE L1 5732 6089 -90 4 1140 1305 97 23 0 chr5 72797818 72797993 -79739266 + B2_Mm1t SINE B2 1 179 -14 4 1140 265 130 0 42 chr5 72798040 72798088 -79739171 + B2_Mm2 SINE B2 47 92 -103 4 1140 510 17 0 0 chr5 72798292 72798351 -79738908 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1140 284 256 121 11 chr5 72799248 72799339 -79737920 - PB1D10 SINE Alu 0 117 17 4 1140 261 0 0 0 chr5 72799516 72799545 -79737714 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1140 248 211 169 13 chr5 72799879 72799956 -79737303 - PB1D10 SINE Alu -39 110 22 4 1140 348 111 0 0 chr5 72800499 72800562 -79736697 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1140 235 292 74 19 chr5 72801541 72801649 -79735610 - L2 LINE L2 -1154 2265 2152 4 1140 213 286 20 0 chr5 72802298 72802347 -79734912 - ID4 SINE ID -25 58 9 4 1140 290 242 157 45 chr5 72803805 72803939 -79733320 + MIRc SINE MIR 109 257 -11 4 1140 588 182 0 0 chr5 72804281 72804418 -79732841 + (TGG)n Simple_repeat Simple_repeat 1 137 0 4 1140 981 151 200 6 chr5 72804674 72804854 -79732405 + B3 SINE B2 2 216 0 4 1140 396 0 0 0 chr5 72805793 72805837 -79731422 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1140 252 287 36 27 chr5 72805933 72806044 -79731215 + L1ME3A LINE L1 204 315 -5927 4 1140 262 255 30 10 chr5 72806076 72806175 -79731084 + Lx9 LINE L1 7537 7637 -7 4 1140 1329 73 50 17 chr5 72806656 72806836 -79730423 + B2_Mm2 SINE B2 2 187 -8 4 1140 286 375 110 24 chr5 72806907 72807197 -79730062 + LTR16A LTR ERVL 137 451 0 4 1140 2132 163 80 0 chr5 72807480 72807830 -79729429 - ORR1C1 LTR MaLR 0 378 1 4 1140 373 304 72 87 chr5 72807861 72808138 -79729121 - B4A SINE B4 -18 274 2 4 1140 1753 183 94 11 chr5 72808230 72808590 -79728669 + MTD LTR MaLR 18 407 -12 4 1140 622 151 0 43 chr5 72808745 72808932 -79728327 + (TTGG)n Simple_repeat Simple_repeat 2 180 0 4 1140 332 292 25 12 chr5 72809063 72809226 -79728033 + L1ME3A LINE L1 3095 3259 -2887 4 1140 198 0 0 0 chr5 72809493 72809515 -79727744 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1140 3793 27 0 0 chr5 72809538 72809951 -79727308 - L1Md_F2 LINE L1 -14 6568 6156 4 1140 1000 28 0 0 chr5 72809951 72810058 -79727201 - U6 snRNA snRNA 0 107 1 4 1140 528 228 192 7 chr5 72810193 72810337 -79726922 + MTD LTR MaLR 154 324 -95 4 1140 294 116 0 0 chr5 72810337 72810380 -79726879 - MT2B LTR ERVL 0 584 542 4 1140 414 0 0 0 chr5 72810383 72810429 -79726830 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 4 1140 467 182 22 22 chr5 72810435 72810525 -79726734 + RMER6B LTR ERVK 4 93 -368 4 1140 402 74 0 0 chr5 72810535 72810589 -79726670 + (TATG)n Simple_repeat Simple_repeat 3 56 0 4 1140 1731 189 224 13 chr5 72810589 72811040 -79726219 - MT2B LTR ERVL -55 546 1 4 1140 250 204 0 0 chr5 72811040 72811084 -79726175 + MTD LTR MaLR 324 367 -54 4 1140 2275 298 87 5 chr5 72811169 72811982 -79725277 + Lx8 LINE L1 6594 7473 0 4 1140 267 310 43 70 chr5 72812284 72812471 -79724788 - ORR1E LTR MaLR -170 189 8 4 1140 22 0 0 0 chr5 72812575 72812597 -79724662 + AT_rich Low_complexity Low_complexity 1 22 0 4 1140 239 368 29 6 chr5 72812605 72812780 -79724479 + L1ME3A LINE L1 5408 5586 -587 4 1140 497 313 83 11 chr5 72812794 72813072 -79724187 + L1ME3A LINE L1 5668 5965 -208 4 1140 627 151 0 0 chr5 72813744 72813870 -79723389 + GA-rich Low_complexity Low_complexity 4 129 0 4 1140 369 282 113 28 chr5 72814890 72814996 -79722263 - PB1 SINE Alu -7 120 6 4 1140 928 155 0 13 chr5 72815058 72815208 -79722051 + B1_Mur4 SINE Alu 1 148 -2 4 1140 1319 279 45 24 chr5 72815260 72815678 -79721581 + Lx6 LINE L1 7033 7459 -1 4 1140 22 0 0 0 chr5 72815683 72815705 -79721554 + AT_rich Low_complexity Low_complexity 1 22 0 4 1140 1911 153 94 6 chr5 72815826 72816167 -79721092 - ORR1D1 LTR MaLR -3 371 1 4 1140 225 228 135 54 chr5 72816369 72816461 -79720798 + MIR3 SINE MIR 67 168 -108 4 1140 2435 283 72 59 chr5 72817496 72818425 -79718834 - Lx8 LINE L1 -5 7468 6528 4 1140 670 329 126 46 chr5 72818694 72819176 -79718083 + MLT1F2 LTR MaLR 11 640 -14 4 1140 365 371 116 40 chr5 72819819 72820190 -79717069 - LTR33 LTR ERVL 0 515 117 4 1140 363 202 114 9 chr5 72820680 72820785 -79716474 - Lx5 LINE L1 0 7050 6935 4 1140 194 270 108 75 chr5 72820789 72820909 -79716350 + L2a LINE L2 3294 3417 -9 4 1140 23 54 0 0 chr5 72821911 72821948 -79715311 + AT_rich Low_complexity Low_complexity 1 37 0 4 1140 2695 78 17 0 chr5 72821999 72822346 -79714913 + L1_Mus3 LINE L1 6280 6632 -6 4 1140 220 245 19 0 chr5 72822349 72822402 -79714857 + B4 SINE B4 2 55 -237 4 1140 184 54 0 75 chr5 72822402 72822442 -79714817 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 4 1140 24 0 0 0 chr5 72822807 72822831 -79714428 + AT_rich Low_complexity Low_complexity 1 24 0 4 1140 266 24 95 0 chr5 72822831 72822873 -79714386 - L1_Mus2 LINE L1 0 6566 6521 4 1140 926 288 33 29 chr5 72823181 72823456 -79713803 + B4 SINE B4 3 278 -14 5 1140 453 19 0 0 chr5 72823465 72823519 -79713740 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1140 24 32 0 0 chr5 72823877 72823908 -79713351 + AT_rich Low_complexity Low_complexity 1 31 0 5 1140 372 269 83 23 chr5 72824669 72824802 -79712457 - MIR SINE MIR -8 254 114 5 1140 624 317 78 49 chr5 72824854 72825265 -79711994 + MLT1C LTR MaLR 45 467 0 5 1140 306 297 29 10 chr5 72826968 72827070 -79710189 + L1M5 LINE L1 5608 5711 -413 5 1140 214 211 19 0 chr5 72829138 72829190 -79708069 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 5 1140 2528 120 0 37 chr5 72830424 72830805 -79706454 + Lx LINE L1 6285 6651 -3 5 1140 5698 66 46 3 chr5 72830974 72831689 -79705570 + L1Md_F2 LINE L1 5833 6578 -4 5 1140 21 0 0 0 chr5 72831950 72831971 -79705288 + AT_rich Low_complexity Low_complexity 1 21 0 5 1140 328 248 136 31 chr5 72832534 72832758 -79704501 - MIRc SINE MIR -15 253 1 5 1140 323 305 42 14 chr5 72834059 72834081 -79703178 + B1_Mur4 SINE Alu 1 107 -43 5 1140 338 306 0 35 chr5 72834081 72834196 -79703063 + ID_B1 SINE B4 105 215 -9 5 1140 235 315 55 0 chr5 72834225 72834298 -79702961 + ID4_ SINE ID 3 79 -4 5 1140 459 0 0 0 chr5 72834307 72834358 -79702901 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1140 427 291 71 26 chr5 72834359 72834514 -79702745 - Tigger5 DNA MER2_type -2177 229 68 5 1140 610 254 112 81 chr5 72835216 72835512 -79701747 - MTEa LTR MaLR -1 378 74 5 1140 995 97 0 0 chr5 72835515 72835659 -79701600 + B1_Mus1 SINE Alu 5 148 0 5 1140 1293 265 149 18 chr5 72835678 72836487 -79700772 + L1MA8 LINE L1 4793 5686 -605 5 1140 262 217 83 0 chr5 72836608 72836668 -79700591 + ID4_ SINE ID 3 67 -16 5 1140 835 243 11 152 chr5 72836668 72836809 -79700450 + L1MA8 LINE L1 5831 5949 -342 5 1140 981 194 43 5 chr5 72836809 72837016 -79700243 + B3 SINE B2 2 216 0 5 1140 835 243 11 152 chr5 72837016 72837223 -79700036 + L1MA8 LINE L1 5950 6130 -161 5 1140 579 112 0 0 chr5 72837248 72837337 -79699922 + (CA)n Simple_repeat Simple_repeat 2 90 0 5 1140 29 0 0 0 chr5 72838994 72839023 -79698236 + AT_rich Low_complexity Low_complexity 1 29 0 5 1140 279 161 0 0 chr5 72840065 72840121 -79697138 + (ATG)n Simple_repeat Simple_repeat 2 57 0 5 1140 471 299 116 32 chr5 72840671 72841110 -79696149 + Charlie4a DNA MER1_type 30 505 -3 5 1140 363 44 0 0 chr5 72841768 72841813 -79695446 + (ATG)n Simple_repeat Simple_repeat 2 46 0 5 1140 243 288 14 0 chr5 72841820 72841893 -79695366 + L1M4 LINE L1 2533 2606 -3540 5 1140 522 320 108 41 chr5 72841935 72842188 -79695071 + L1MB7 LINE L1 5654 5921 -263 5 1140 395 302 93 6 chr5 72842188 72842371 -79694888 + RMER30 DNA MER1_type 1 199 -3 5 1140 522 320 108 41 chr5 72842371 72842608 -79694651 + L1MB7 LINE L1 5922 6177 -7 5 1140 751 131 44 0 chr5 72845945 72846082 -79691177 - URR1B DNA MER1_type 0 225 83 5 1140 1983 77 41 17 chr5 72846709 72847001 -79690258 - L1_Mus3 LINE L1 -2 6636 6338 5 1140 303 356 318 36 chr5 72849023 72849415 -79687844 + MLT1D LTR MaLR 5 505 0 5 1140 903 73 14 7 chr5 72849574 72849712 -79687547 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 5 1140 226 343 94 61 chr5 72850304 72850484 -79686775 + MLT1I LTR MaLR 224 409 -2 5 1140 1002 323 62 32 chr5 72852214 72852838 -79684421 - L1M3 LINE L1 -1100 5040 4398 5 1140 346 206 165 95 chr5 72852846 72852893 -79684366 + L1M3 LINE L1 5090 5146 -994 5 1140 490 69 0 0 chr5 72852893 72852965 -79684294 + L1_Mus1 LINE L1 6494 6565 -2 5 1140 406 211 156 76 chr5 72852965 72853253 -79684006 + L1M3 LINE L1 5147 5469 -699 5 1140 307 197 0 27 chr5 72853655 72853728 -79683531 + L1M3 LINE L1 5115 5185 -955 5 1140 582 354 75 9 chr5 72853729 72854072 -79683187 + RMER15-int LTR ERVL 6 515 -4484 5 1140 2058 33 0 0 chr5 72854095 72854325 -79682934 + L1_Mm LINE L1 5357 5586 -297 5 1140 8723 28 0 0 chr5 72854325 72855321 -79681938 + L1Md_A LINE L1 5587 6582 0 5 1140 183 80 0 0 chr5 72855663 72855688 -79681571 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1140 2303 321 68 43 chr5 72855702 72856944 -79680315 + RMER15-int LTR ERVL 568 1840 -3159 5 1140 604 221 52 0 chr5 72857081 72857217 -79680042 - B3A SINE B2 -55 143 1 5 1140 2240 48 0 0 chr5 72857225 72857531 -79679728 - L1Md_A LINE L1 0 6582 6314 5 1140 659 261 28 40 chr5 72858714 72858955 -79678304 + L1MB7 LINE L1 5595 5842 -342 5 1140 837 300 115 30 chr5 72858952 72859388 -79677871 + Lx8 LINE L1 6973 7445 -28 5 1140 994 47 63 0 chr5 72859434 72859561 -79677698 + B1_Mus1 SINE Alu 2 136 -12 5 1140 239 68 0 64 chr5 72859562 72859609 -79677650 + (CAA)n Simple_repeat Simple_repeat 2 45 0 5 1140 488 158 11 0 chr5 72860585 72860680 -79676579 + (TATG)n Simple_repeat Simple_repeat 4 99 0 5 1140 327 65 0 0 chr5 72861029 72861075 -79676184 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 1140 3588 64 0 11 chr5 72861076 72861532 -79675727 - L1Md_F2 LINE L1 -34 6548 6098 5 1140 1166 35 42 0 chr5 72861533 72861676 -79675583 + L1Md_F2 LINE L1 5942 6090 -492 5 1140 559 307 112 24 chr5 72861834 72862121 -79675138 + MER2 DNA MER2_type 25 336 -9 5 1140 2453 146 83 35 chr5 72862522 72862785 -79674474 + Lx3C LINE L1 6471 6762 -214 5 1140 348 77 0 0 chr5 72862785 72862837 -79674422 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1140 2453 146 83 35 chr5 72862837 72863056 -79674203 + Lx3C LINE L1 6763 6976 0 5 1140 326 207 0 22 chr5 72863437 72863526 -79673733 + CT-rich Low_complexity Low_complexity 1 87 0 5 1140 468 0 0 0 chr5 72863846 72863898 -79673361 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1140 1284 196 301 78 chr5 72865771 72866207 -79671052 - MT2A LTR ERVL 0 533 1 5 1140 282 260 91 0 chr5 72866866 72866943 -79670316 + MTD LTR MaLR 127 210 -209 5 1140 625 22 0 43 chr5 72867058 72867151 -79670108 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 5 1140 240 323 0 0 chr5 72867451 72867513 -79669746 + polypyrimidine Low_complexity Low_complexity 3 64 0 5 1140 564 324 27 36 chr5 72867582 72867806 -79669453 + B4A SINE B4 41 262 -30 5 1140 351 0 0 0 chr5 72867807 72867846 -79669413 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1140 27 0 0 0 chr5 72867929 72867956 -79669303 + AT_rich Low_complexity Low_complexity 1 27 0 5 1140 1100 67 7 0 chr5 72868384 72868534 -79668725 + (TTC)n Simple_repeat Simple_repeat 3 153 0 5 1140 416 318 52 39 chr5 72868751 72868905 -79668354 + B3A SINE B2 5 160 -38 5 1140 26 0 0 0 chr5 72868939 72868965 -79668294 + AT_rich Low_complexity Low_complexity 1 26 0 5 1140 990 157 0 0 chr5 72871065 72871243 -79666016 + GA-rich Low_complexity Low_complexity 2 179 0 5 1140 459 63 0 0 chr5 72871421 72871484 -79665775 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 5 1140 216 0 0 0 chr5 72872563 72872587 -79664672 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1140 477 0 0 0 chr5 72872587 72872639 -79664620 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1140 608 269 28 37 chr5 72872816 72873032 -79664227 - MTD LTR MaLR 0 419 206 5 1140 291 221 0 0 chr5 72873032 72873118 -79664141 + (TA)n Simple_repeat Simple_repeat 2 87 0 5 1140 952 156 12 6 chr5 72873125 72873293 -79663966 - MTD LTR MaLR -242 177 9 5 1140 219 69 0 0 chr5 72874536 72874565 -79662694 + (TTA)n Simple_repeat Simple_repeat 2 30 0 5 1140 453 226 3 53 chr5 72875246 72875385 -79661874 + Lx7 LINE L1 7578 7688 -8 5 1140 1313 108 0 16 chr5 72875409 72875598 -79661661 + B2_Mm2 SINE B2 1 186 -9 5 1140 1563 150 39 29 chr5 72875728 72876009 -79661250 - Lx9 LINE L1 -703 6941 6658 5 142 2771 191 110 30 chr5 72876008 72876553 -79660706 + Lx9 LINE L1 6928 7517 -127 5 1141 198 0 0 0 chr5 72876553 72876575 -79660684 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1141 2771 191 110 30 chr5 72876575 72876692 -79660567 + Lx9 LINE L1 7518 7642 -2 5 1141 1191 77 0 0 chr5 72876787 72877150 -79660109 + (CA)n Simple_repeat Simple_repeat 1 363 0 5 1141 471 241 71 0 chr5 72877312 72877424 -79659835 + PB1D7 SINE Alu 1 120 0 5 1141 1953 225 50 12 chr5 72877617 72878098 -79659161 + RLTR16 LTR ERVK 7 505 0 5 1141 22 35 0 0 chr5 72879527 72879556 -79657703 + AT_rich Low_complexity Low_complexity 1 29 0 5 1141 607 283 126 0 chr5 72879588 72879786 -79657473 + ID_B1 SINE B4 1 223 -1 5 1141 663 13 0 0 chr5 72879791 72879867 -79657392 + (CA)n Simple_repeat Simple_repeat 2 77 0 5 1141 292 295 101 99 chr5 72879870 72880314 -79656945 - L1MC4 LINE L1 -986 7056 6612 5 1141 289 277 33 67 chr5 72880324 72880444 -79656815 + ORR1E LTR MaLR 4 119 -240 5 1141 1693 94 16 0 chr5 72880599 72880854 -79656405 - L1_Mus3 LINE L1 -6 6632 6374 5 1141 2822 99 3 0 chr5 72880854 72881236 -79656023 + L1_Mus3 LINE L1 5985 6367 -269 5 1141 794 236 55 137 chr5 72881785 72882114 -79655145 + RLTR11A2 LTR ERVK 1 302 -143 5 1141 615 214 25 14 chr5 72882139 72882320 -79654939 + RLTR11A2 LTR ERVK 285 501 -27 5 1141 1659 174 9 46 chr5 72882827 72883267 -79653992 - ORR1B2 LTR MaLR 0 394 1 5 1141 239 207 26 18 chr5 72883267 72883350 -79653909 - ORR1B2 LTR MaLR -272 122 44 5 1141 258 138 0 15 chr5 72883345 72883411 -79653848 - ORR1B1 LTR MaLR -254 140 76 5 1141 409 174 32 80 chr5 72883415 72883540 -79653719 - ORR1B1 LTR MaLR -248 146 28 5 1141 710 318 38 104 chr5 72883527 72883732 -79653527 - Tigger7 DNA MER2_type -1880 611 415 5 1141 667 135 132 23 chr5 72883732 72883861 -79653398 + B1_Mus1 SINE Alu 5 147 -1 5 1141 710 318 38 104 chr5 72883861 72884049 -79653210 - Tigger7 DNA MER2_type -2077 414 243 5 1141 3368 35 5 0 chr5 72884049 72884443 -79652816 + MTA_Mm LTR MaLR 1 396 0 5 1141 710 318 38 104 chr5 72884443 72884547 -79652712 - Tigger7 DNA MER2_type -2249 242 146 5 1141 342 0 0 0 chr5 72884648 72884686 -79652573 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1141 304 264 73 0 chr5 72884702 72884812 -79652447 + PB1D9 SINE Alu 1 118 -2 5 1141 842 184 0 6 chr5 72886083 72886263 -79650996 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1141 216 219 0 0 chr5 72886263 72886304 -79650955 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1141 824 161 0 6 chr5 72886304 72886467 -79650792 + (CA)n Simple_repeat Simple_repeat 2 163 0 5 1141 527 324 80 25 chr5 72886878 72887277 -79649982 - MLT1D LTR MaLR -4 501 81 5 1141 348 333 93 13 chr5 72887310 72887535 -79649724 + MER33 DNA MER1_type 1 243 -81 5 1141 219 69 0 0 chr5 72888457 72888486 -79648773 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1141 1083 275 224 37 chr5 72888522 72889119 -79648140 + MER21B LTR ERV1 31 739 -124 6 1141 198 224 0 39 chr5 72889299 72889350 -79647909 - MIR SINE MIR -118 144 96 6 1141 682 237 23 25 chr5 72890110 72890285 -79646974 + ID_B1 SINE B4 83 264 -28 6 1141 544 316 110 31 chr5 72890958 72891285 -79645974 + MLT1C LTR MaLR 63 415 -52 6 1141 516 261 12 25 chr5 72892047 72892208 -79645051 + RSINE1 SINE B4 2 160 -5 6 1141 21 0 0 0 chr5 72892259 72892280 -79644979 + AT_rich Low_complexity Low_complexity 1 21 0 6 1141 197 139 23 0 chr5 72892418 72892461 -79644798 + G-rich Low_complexity Low_complexity 1 44 0 6 1141 189 0 0 0 chr5 72892459 72892480 -79644779 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 6 1141 432 0 0 0 chr5 72893011 72893059 -79644200 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1141 414 0 0 0 chr5 72893880 72893926 -79643333 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1141 245 274 32 0 chr5 72897919 72898014 -79639245 + L1MA6 LINE L1 6053 6150 -150 6 1141 614 192 92 0 chr5 72898527 72898657 -79638602 + B1_Mur1 SINE Alu 2 143 -6 6 1141 565 186 3 80 chr5 72898958 72899039 -79638220 + Lx7 LINE L1 5592 5705 -175 6 1141 3679 155 75 19 chr5 72899039 72899717 -79637542 + RMER6D LTR ERVK 1 716 -4 6 1141 565 181 1 80 chr5 72899717 72899787 -79637472 + Lx7 LINE L1 5675 5761 -119 6 1141 1958 188 160 20 chr5 72899790 72900241 -79637018 + RLTR21 LTR ERVK 4 517 -1055 6 1141 5259 197 103 54 chr5 72900241 72900708 -79636551 + Lx7 LINE L1 5942 6405 -1291 6 1141 414 0 0 0 chr5 72900708 72900754 -79636505 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1141 5259 197 103 54 chr5 72900754 72901755 -79635504 + Lx7 LINE L1 6406 7482 -214 6 1141 1385 40 6 0 chr5 72901770 72901943 -79635316 - B2_Mm1t SINE B2 -5 188 15 6 1141 766 191 18 12 chr5 72901957 72902121 -79635138 + Lx7 LINE L1 7532 7696 0 6 1141 187 333 140 40 chr5 72903906 72904106 -79633153 + L2a LINE L2 2992 3211 -215 6 1141 236 260 52 0 chr5 72904210 72904287 -79632972 - B3 SINE B2 -135 81 1 6 1141 21 0 0 0 chr5 72904505 72904526 -79632733 + AT_rich Low_complexity Low_complexity 1 21 0 6 1141 188 300 73 62 chr5 72904685 72904781 -79632478 + MIRb SINE MIR 172 268 0 6 1141 582 86 0 0 chr5 72908510 72908591 -79628668 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 6 1141 28 48 0 0 chr5 72908938 72908980 -79628279 + AT_rich Low_complexity Low_complexity 1 42 0 6 1141 36 40 0 0 chr5 72909693 72909743 -79627516 + AT_rich Low_complexity Low_complexity 1 50 0 6 1141 27 0 0 0 chr5 72909908 72909935 -79627324 + AT_rich Low_complexity Low_complexity 1 27 0 6 1141 5404 187 76 65 chr5 72910053 72911533 -79625726 + RLTR21 LTR ERVK 7 1404 0 6 1141 189 0 0 0 chr5 72911838 72911859 -79625400 + (CTCA)n Simple_repeat Simple_repeat 2 22 0 6 1141 274 324 142 18 chr5 72911978 72912204 -79625055 + L1M5 LINE L1 5548 5801 -439 6 1141 631 128 0 0 chr5 72912663 72912757 -79624502 + RMER19C LTR ERVK 518 611 0 6 1141 25 31 0 0 chr5 72912763 72912795 -79624464 + AT_rich Low_complexity Low_complexity 1 32 0 6 1141 420 289 68 40 chr5 72913625 72913773 -79623486 + RSINE1 SINE B4 2 153 -12 6 1141 336 340 28 112 chr5 72914231 72914248 -79623011 + B4 SINE B4 69 173 -119 6 1141 743 215 0 39 chr5 72914248 72914403 -79622856 + B1_Mur4 SINE Alu 1 149 -1 6 1141 802 284 127 0 chr5 72915027 72915256 -79622003 + B4A SINE B4 2 259 -33 6 1141 369 62 0 0 chr5 72915478 72915526 -79621733 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1141 340 261 142 40 chr5 72916013 72916309 -79620950 + L1MC2 LINE L1 4272 4597 -1549 6 1141 350 310 13 96 chr5 72916318 72916475 -79620784 + ID_B1 SINE B4 80 223 -1 6 1141 1067 238 166 39 chr5 72916481 72916622 -79620637 + L1MC2 LINE L1 4630 4768 -1378 6 1141 1160 36 7 0 chr5 72916622 72916759 -79620500 + B1_Mus1 SINE Alu 1 138 -10 6 1141 310 53 17 35 chr5 72916759 72916817 -79620442 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 6 1141 1067 238 166 39 chr5 72916817 72917318 -79619941 + L1MC2 LINE L1 4769 5354 -792 6 1141 204 248 9 56 chr5 72917554 72917661 -79619598 + (TAAA)n Simple_repeat Simple_repeat 1 102 0 6 1141 226 277 116 40 chr5 72917717 72917890 -79619369 + Lx8 LINE L1 7287 7472 -1 6 1141 446 249 36 15 chr5 72917903 72918086 -79619173 + L1MC2 LINE L1 5767 5948 -385 6 1141 180 0 0 0 chr5 72918268 72918288 -79618971 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 6 1141 535 218 35 35 chr5 72918322 72918436 -79618823 - B1F SINE Alu -29 120 7 6 1141 257 279 23 81 chr5 72918360 72918446 -79618813 - MT2B2 LTR ERVL -343 241 161 6 1141 23 0 0 0 chr5 72918446 72918469 -79618790 + AT_rich Low_complexity Low_complexity 1 23 0 6 1141 1035 200 19 34 chr5 72918473 72918680 -79618579 - B3 SINE B2 -10 206 3 6 1141 238 199 159 0 chr5 72919803 72919868 -79617391 + L2a LINE L2 3310 3424 -2 6 1141 277 250 37 37 chr5 72920875 72920983 -79616276 + L1ME3A LINE L1 5872 5979 -194 6 1141 22 80 0 0 chr5 72921138 72921188 -79616071 + AT_rich Low_complexity Low_complexity 1 50 0 6 1141 410 170 139 32 chr5 72921920 72922078 -79615181 + L1MC5 LINE L1 7301 7475 -486 6 1141 22 0 0 0 chr5 72922753 72922775 -79614484 + AT_rich Low_complexity Low_complexity 1 22 0 6 1141 641 304 29 19 chr5 72922784 72922992 -79614267 - B3 SINE B2 -6 210 1 6 1141 320 258 30 15 chr5 72923344 72923411 -79613848 + Charlie1 DNA MER1_type 4 71 -2710 6 1141 210 219 37 0 chr5 72923532 72923614 -79613645 + (TTATA)n Simple_repeat Simple_repeat 4 88 0 6 1141 293 283 98 56 chr5 72923635 72923901 -79613358 + Charlie1 DNA MER1_type 2503 2779 -2 6 1141 364 292 131 0 chr5 72924070 72924238 -79613021 + MIRc SINE MIR 48 237 -31 6 1141 21 82 0 0 chr5 72924529 72924578 -79612681 + AT_rich Low_complexity Low_complexity 1 49 0 6 1141 600 340 152 38 chr5 72925156 72925954 -79611305 + L1MEc LINE L1 60 948 -5452 6 1141 382 112 106 0 chr5 72926003 72926163 -79611096 + (CAGTA)n Simple_repeat Simple_repeat 4 180 0 6 1141 631 301 225 27 chr5 72926202 72926926 -79610333 + L1MEc LINE L1 1019 1911 -4489 6 1141 533 243 107 53 chr5 72926926 72927113 -79610146 + B3A SINE B2 1 197 -1 6 1141 631 301 225 27 chr5 72927113 72927422 -79609837 + L1MEc LINE L1 1912 2257 -4143 6 1141 717 164 62 41 chr5 72927450 72927596 -79609663 + B1_Mur2 SINE Alu 1 149 0 6 1141 321 257 63 14 chr5 72927615 72927757 -79609502 + L1MEc LINE L1 2309 2457 -3862 6 1141 1188 68 0 0 chr5 72927877 72928025 -79609234 - B1_Mus1 SINE Alu 0 148 1 6 1141 328 311 48 19 chr5 72928294 72928399 -79608860 - PB1D10 SINE Alu -1 116 9 6 1141 1144 51 0 0 chr5 72929677 72929815 -79607444 + B1_Mus1 SINE Alu 1 138 -10 6 1141 843 146 27 34 chr5 72929942 72930091 -79607168 - B1_Mur2 SINE Alu 0 149 2 6 1141 310 261 108 40 chr5 72930454 72930602 -79606657 - L1MC1 LINE L1 -101 6232 6075 6 1141 369 303 0 0 chr5 72930698 72930830 -79606429 - L1MC1 LINE L1 -387 5946 5815 6 1141 27 62 0 0 chr5 72932275 72932323 -79604936 + AT_rich Low_complexity Low_complexity 1 48 0 6 1141 24 67 0 0 chr5 72932340 72932385 -79604874 + AT_rich Low_complexity Low_complexity 1 45 0 6 1141 454 271 228 6 chr5 72932908 72933079 -79604180 - B3 SINE B2 -6 210 2 6 1141 354 156 260 40 chr5 72933491 72933591 -79603668 + B3A SINE B2 6 127 -71 6 1141 33846 41 6 1 chr5 72933598 72938700 -79598559 + L1Md_T LINE L1 412 5589 -297 6 1141 9056 4 0 0 chr5 72938700 72939696 -79597563 + L1Md_T LINE L1 5590 6585 0 6 1141 293 208 125 29 chr5 72939704 72939808 -79597451 + B3A SINE B2 100 213 -3 6 1141 215 310 0 0 chr5 72941923 72941981 -79595278 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 6 1141 23 0 0 0 chr5 72942235 72942258 -79595001 + AT_rich Low_complexity Low_complexity 1 23 0 6 1141 397 286 40 13 chr5 72942268 72942417 -79594842 + RSINE1 SINE B4 3 155 -10 6 1141 1331 51 56 6 chr5 72942730 72942909 -79594350 - B2_Mm2 SINE B2 -6 189 2 6 1141 307 184 0 0 chr5 72943600 72943649 -79593610 + ID4 SINE ID 11 59 -24 6 1141 477 186 0 20 chr5 72945394 72945493 -79591766 - RLTR13B1 LTR ERVK -92 801 705 6 1141 578 189 129 0 chr5 72947991 72948123 -79589136 + B1_Mur2 SINE Alu 1 149 0 6 1141 374 250 22 141 chr5 72948136 72948271 -79588988 + PB1D9 SINE Alu 1 119 -1 6 1141 229 167 95 0 chr5 72949242 72949326 -79587933 + (CTATA)n Simple_repeat Simple_repeat 4 95 0 6 1141 21 0 0 0 chr5 72950830 72950851 -79586408 + GC_rich Low_complexity Low_complexity 1 21 0 6 1141 198 0 0 0 chr5 72950976 72950998 -79586261 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1141 228 35 0 0 chr5 72951680 72951709 -79585550 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1141 276 321 9 19 chr5 72951739 72951847 -79585412 - PB1D10 SINE Alu -6 111 5 6 1141 223 239 0 0 chr5 72951885 72951931 -79585328 - MIR SINE MIR -110 152 107 6 1141 501 183 0 0 chr5 72952515 72952619 -79584640 + CT-rich Low_complexity Low_complexity 1 104 0 6 1141 435 182 5 121 chr5 72953333 72953466 -79583793 + L1_Mus2 LINE L1 6460 6630 -6 6 1141 277 271 18 18 chr5 72953499 72953608 -79583651 + L1M4 LINE L1 5631 5739 -439 6 1141 402 296 71 138 chr5 72953748 72953987 -79583272 - MLT1A LTR MaLR -185 223 1 6 1141 2657 67 53 0 chr5 72954013 72954354 -79582905 - RLTR10D LTR ERVK 0 359 1 6 1141 1238 240 191 7 chr5 72954520 72954939 -79582320 + RLTR1 LTR ERV1 129 624 0 6 1141 735 114 57 8 chr5 72954939 72955063 -79582196 + MMERGLN-int LTR ERV1 1 130 -3169 6 1141 29748 251 19 25 chr5 72955099 72956940 -79580319 + MMERGLN-int LTR ERV1 430 2273 -5283 6 1141 212 59 0 29 chr5 72956940 72956975 -79580284 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1141 29748 251 19 25 chr5 72956975 72962300 -79574959 + MMERGLN-int LTR ERV1 2274 7554 -2 6 1141 499 256 71 16 chr5 72962390 72962573 -79574686 + RLTR1 LTR ERV1 129 321 -303 6 1141 678 313 157 13 chr5 72962573 72962961 -79574298 + L1M2 LINE L1 2614 3057 -3086 6 1141 867 189 6 0 chr5 72963001 72963170 -79574089 + URR1B DNA MER1_type 56 225 0 6 1141 276 269 63 19 chr5 72963202 72963361 -79573898 + L1M2 LINE L1 3070 3235 -2908 6 1141 21 0 0 0 chr5 72963886 72963907 -79573352 + AT_rich Low_complexity Low_complexity 1 21 0 6 1141 219 150 0 0 chr5 72964236 72964295 -79572964 + (T)n Simple_repeat Simple_repeat 1 59 0 6 1141 192 77 0 0 chr5 72964311 72964337 -79572922 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1141 1450 66 22 0 chr5 72966212 72966395 -79570864 + B2_Mm2 SINE B2 3 189 -6 6 1141 565 250 70 65 chr5 72966992 72967206 -79570053 + B3 SINE B2 2 216 0 6 1141 1387 80 26 11 chr5 72968019 72968209 -79569050 + B2_Mm2 SINE B2 2 194 -1 7 1141 372 125 0 0 chr5 72970681 72970745 -79566514 + (T)n Simple_repeat Simple_repeat 1 64 0 7 1141 707 227 32 21 chr5 72971189 72971378 -79565881 + B3 SINE B2 2 192 -24 7 1141 189 0 0 0 chr5 72971388 72971409 -79565850 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 7 1141 207 191 0 0 chr5 72973173 72973215 -79564044 + A-rich Low_complexity Low_complexity 3 44 0 7 1141 231 61 0 0 chr5 72975144 72975177 -79562082 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1141 1183 74 0 0 chr5 72975185 72975333 -79561926 + B1_Mus1 SINE Alu 1 148 0 7 1141 410 110 27 0 chr5 72975333 72975406 -79561853 + (GGAGAA)n Simple_repeat Simple_repeat 4 78 0 7 1141 22 0 0 0 chr5 72975945 72975967 -79561292 + AT_rich Low_complexity Low_complexity 1 22 0 7 1141 1326 79 0 0 chr5 72976003 72976425 -79560834 + (TG)n Simple_repeat Simple_repeat 1 422 0 7 1141 696 195 0 0 chr5 72976425 72976548 -79560711 - B3 SINE B2 -93 123 1 7 1141 688 189 35 7 chr5 72976930 72977074 -79560185 - B1F2 SINE Alu -1 148 1 7 1141 440 224 65 55 chr5 72977120 72977265 -79559994 - PB1D10 SINE Alu -2 147 1 7 1141 216 0 0 0 chr5 72979113 72979137 -79558122 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1141 244 286 142 28 chr5 72979504 72979680 -79557579 - L1MA5 LINE L1 0 6300 6105 7 1141 249 57 0 0 chr5 72981622 72981657 -79555602 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1141 363 324 0 0 chr5 72981891 72981999 -79555260 + L1M5 LINE L1 5565 5672 -452 7 1141 685 218 48 87 chr5 72982361 72982567 -79554692 - B3A SINE B2 0 198 1 7 1141 207 204 0 0 chr5 72982705 72982754 -79554505 + GA-rich Low_complexity Low_complexity 3 51 0 7 1141 708 225 22 0 chr5 72983783 72983921 -79553338 + B1_Mur1 SINE Alu 4 144 -5 7 1141 578 100 0 10 chr5 72983921 72984022 -79553237 + (GA)n Simple_repeat Simple_repeat 1 100 0 7 1141 206 222 0 0 chr5 72984025 72984061 -79553198 + polypurine Low_complexity Low_complexity 3 38 0 7 1141 451 283 94 0 chr5 72984298 72984404 -79552855 - B1_Mur2 SINE Alu -24 125 10 7 1141 539 300 40 23 chr5 72984420 72984632 -79552627 - B3A SINE B2 -1 215 12 7 1141 771 223 33 33 chr5 72985146 72985327 -79551932 + B3 SINE B2 1 181 -35 7 1141 336 281 61 30 chr5 72985448 72985500 -79551759 + L1MEd LINE L1 4 62 -6057 7 1141 225 0 0 0 chr5 72985500 72985525 -79551734 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 7 1141 336 281 61 30 chr5 72985525 72985637 -79551622 + L1MEd LINE L1 63 173 -5946 7 1141 254 245 0 0 chr5 72985740 72985793 -79551466 + MTEa LTR MaLR 18 70 -309 7 1141 206 68 43 43 chr5 72985794 72985840 -79551419 + T-rich Low_complexity Low_complexity 4 49 0 7 1141 493 192 208 0 chr5 72985842 72985962 -79551297 - B1_Mus1 SINE Alu -1 147 3 7 1141 232 184 0 20 chr5 72985968 72986018 -79551241 + MTEa LTR MaLR 61 109 -270 7 1141 1723 109 59 59 chr5 72986042 72986363 -79550896 + ORR1A4 LTR MaLR 1 321 -8 7 1141 2557 133 56 29 chr5 72986420 72986830 -79550429 + MTC LTR MaLR 1 421 0 7 1141 488 266 35 74 chr5 72986873 72987076 -79550183 - B3A SINE B2 -1 197 3 7 1141 581 232 40 45 chr5 72987079 72987255 -79550004 + MTEa LTR MaLR 205 379 0 7 1141 281 286 101 0 chr5 72987290 72987383 -79549876 + PB1D10 SINE Alu 16 117 0 7 1141 180 0 0 0 chr5 72987486 72987506 -79549753 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1141 736 60 0 0 chr5 72987506 72987606 -79549653 - B1_Mm SINE Alu 0 147 48 7 1141 1909 193 81 69 chr5 72987925 72988218 -79549041 - RMER4B LTR ERVK 0 585 316 7 1141 477 0 0 0 chr5 72988218 72988271 -79548988 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 7 1141 1909 193 81 69 chr5 72988271 72988555 -79548704 - RMER4B LTR ERVK -270 315 1 7 1141 229 277 60 12 chr5 72988555 72988620 -79548639 + MLT1A1 LTR MaLR 340 408 0 7 1141 245 404 7 7 chr5 72988665 72988817 -79548442 + MER63A DNA AcHobo 8 159 -51 7 1141 556 130 174 9 chr5 72988886 72988995 -79548264 + B1_Mur2 SINE Alu 22 148 -1 7 1141 535 191 26 0 chr5 72989273 72989388 -79547871 + B1_Mur4 SINE Alu 28 145 -5 7 1141 953 121 50 0 chr5 72989437 72989578 -79547681 + B1_Mus1 SINE Alu 1 148 0 7 1141 744 155 19 6 chr5 72989579 72989735 -79547524 + GA-rich Low_complexity Low_complexity 3 160 0 7 1141 481 184 0 0 chr5 72989858 72989945 -79547314 + B1_Mur2 SINE Alu 36 122 -27 7 1141 1952 199 81 62 chr5 72990097 72990860 -79546399 - RMER19B LTR ERVK -12 890 1 7 1141 208 286 28 14 chr5 72991152 72991223 -79546036 - MER5A DNA MER1_type -108 81 10 7 1141 420 132 40 0 chr5 72991643 72991719 -79545540 + L1_Mus2 LINE L1 6487 6565 -1 7 1141 253 308 18 18 chr5 72991764 72991873 -79545386 + L1M4 LINE L1 5631 5739 -439 7 1141 367 301 71 138 chr5 72992013 72992252 -79545007 - MLT1A LTR MaLR -185 223 1 7 1141 1568 213 84 95 chr5 72992437 72992993 -79544266 + RLTR31_Mur LTR ERVK 4 553 0 7 1141 280 186 0 0 chr5 72992993 72993052 -79544207 + ORR1D2 LTR MaLR 271 329 -41 7 1141 979 107 14 0 chr5 72993052 72993192 -79544067 + B1_Mus1 SINE Alu 1 142 -6 7 1141 4655 77 51 6 chr5 72993207 72993857 -79543402 - MusHAL1 LINE L1 -71 2641 1963 7 1141 192 77 0 0 chr5 72994243 72994269 -79542990 + (GGA)n Simple_repeat Simple_repeat 2 27 0 7 1141 246 188 21 0 chr5 72994468 72994516 -79542743 - BC1_Mm scRNA scRNA -95 57 9 7 1141 882 294 85 30 chr5 72996996 72997206 -79540053 - RMER12 LTR ERVK 0 1322 1097 7 1141 273 29 0 0 chr5 72997206 72997240 -79540019 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1141 4087 228 79 26 chr5 72997240 72997501 -79539758 - RMER12 LTR ERVK -226 1096 770 7 1141 339 85 0 0 chr5 72997501 72997548 -79539711 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 7 1141 4087 159 73 22 chr5 72997548 72998287 -79538972 - RMER12 LTR ERVK -553 769 1 7 1141 770 332 126 48 chr5 72998520 72999188 -79538071 + MER21B LTR ERV1 19 738 -125 7 1141 918 152 7 0 chr5 72999191 72999336 -79537923 + B2_Mm2 SINE B2 11 156 -39 7 1141 513 0 0 0 chr5 72999339 72999396 -79537863 + (TAAA)n Simple_repeat Simple_repeat 1 57 0 7 1141 986 62 241 0 chr5 72999398 72999543 -79537716 + B2_Mm2 SINE B2 2 181 -14 7 1141 1210 196 9 0 chr5 73000262 73000476 -79536783 + B3 SINE B2 1 216 0 1 1141 768 167 7 14 chr5 73001034 73001180 -79536079 + B1_Mus2 SINE Alu 1 145 -2 2 1141 733 273 22 106 chr5 73001208 73001519 -79535740 + B4 SINE B4 4 288 -4 3 1141 219 171 40 0 chr5 73001524 73001600 -79535659 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 1141 269 208 0 14 chr5 73003399 73003472 -79533787 + CT-rich Low_complexity Low_complexity 3 74 0 5 1141 180 176 0 0 chr5 73003600 73003634 -79533625 + CT-rich Low_complexity Low_complexity 2 35 0 6 1141 4420 72 10 5 chr5 73003854 73004429 -79532830 + L1Md_F2 LINE L1 6003 6580 -2 7 1141 1914 188 89 23 chr5 73005744 73006135 -79531124 - MTC LTR MaLR 0 421 5 8 1141 368 300 32 51 chr5 73006418 73006576 -79530683 + ERVL-E-int LTR ERVL 4750 4904 -763 9 1141 1192 168 37 5 chr5 73006729 73006944 -79530315 + URR1A DNA MER1_type 3 224 -2 1 1142 317 305 51 0 chr5 73007555 73007673 -79529586 + LTR16A LTR ERVL 314 437 -14 1 1142 410 225 25 0 chr5 73010840 73010920 -79526339 - ID4_ SINE ID 0 83 2 1 1142 724 267 110 30 chr5 73011868 73012131 -79525128 + B4A SINE B4 5 288 -4 1 1142 223 197 16 32 chr5 73012131 73012194 -79525065 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 1 1142 557 236 266 9 chr5 73012430 73012644 -79524615 + B4A SINE B4 11 279 -13 1 1142 212 175 0 24 chr5 73012664 73012705 -79524554 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1142 264 77 0 0 chr5 73012933 73012972 -79524287 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1142 539 307 22 0 chr5 73012975 73013112 -79524147 - B3A SINE B2 -34 164 25 1 1142 489 270 108 48 chr5 73013129 73013378 -79523881 + Lx9 LINE L1 7207 7470 -174 1 1142 1004 288 84 16 chr5 73014186 73014553 -79522706 + Lx9 LINE L1 6609 7000 -644 2 1142 26 82 0 0 chr5 73014775 73014836 -79522423 + AT_rich Low_complexity Low_complexity 1 61 0 2 1142 606 177 7 28 chr5 73014836 73014981 -79522278 - Lx4A LINE L1 -1 7057 6916 2 1142 678 269 64 5 chr5 73014995 73015197 -79522062 + RCHARR1 DNA MER1_type 4 217 -757 2 1142 2915 293 126 14 chr5 73015209 73016316 -79520943 + Lx8 LINE L1 6241 7471 -2 2 1142 1430 65 16 5 chr5 73016339 73016526 -79520733 + B2_Mm2 SINE B2 3 191 -4 2 1142 652 318 64 7 chr5 73016571 73016955 -79520304 + L1M2 LINE L1 2613 3057 -3086 2 1142 852 195 6 0 chr5 73016995 73017164 -79520095 + URR1B DNA MER1_type 56 225 0 2 1142 1174 268 93 31 chr5 73017196 73017747 -79519512 + L1M2 LINE L1 3070 3654 -2489 2 1142 270 208 0 0 chr5 73017766 73017814 -79519445 + L1M4 LINE L1 3877 3924 -2222 2 1142 189 0 0 0 chr5 73019178 73019199 -79518060 + (C)n Simple_repeat Simple_repeat 1 21 0 2 1142 214 162 0 0 chr5 73019631 73019668 -79517591 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1142 2527 165 20 76 chr5 73019971 73020561 -79516698 + RLTR31_Mm LTR ERVK 5 561 0 3 1142 258 308 0 0 chr5 73020563 73020641 -79516618 - L2 LINE L2 -570 2849 2772 3 1142 1314 196 133 19 chr5 73020945 73021320 -79515939 - MTD LTR MaLR -1 418 1 3 1142 377 148 0 33 chr5 73021837 73021928 -79515331 + GA-rich Low_complexity Low_complexity 1 88 0 3 1142 447 179 217 0 chr5 73022750 73022856 -79514403 - URR1A DNA MER1_type -96 130 2 3 1142 250 265 29 0 chr5 73022866 73022934 -79514325 - Lx9 LINE L1 -666 6978 6909 3 1142 2615 57 0 0 chr5 73022929 73023243 -79514016 + Lx3_Mus LINE L1 6344 6657 -352 3 1142 1566 57 5 0 chr5 73023245 73023456 -79513803 + Lx3_Mus LINE L1 6798 7009 0 3 1142 948 18 0 0 chr5 73023463 73023573 -79513686 + (GAA)n Simple_repeat Simple_repeat 3 112 0 3 1142 822 172 0 33 chr5 73023594 73023737 -79513522 + B1_Mur3 SINE Alu 1 138 -11 3 1142 282 29 0 0 chr5 73023737 73023772 -79513487 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1142 486 270 19 13 chr5 73023782 73023936 -79513323 - Lx9 LINE L1 -730 6914 6760 3 1142 466 325 100 0 chr5 73023949 73024109 -79513150 - MTE2b LTR MaLR -197 182 7 4 1142 22 0 0 0 chr5 73024467 73024489 -79512770 + AT_rich Low_complexity Low_complexity 1 22 0 4 1142 378 0 0 0 chr5 73024515 73024557 -79512702 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1142 933 225 58 0 chr5 73025646 73025837 -79511422 - B3 SINE B2 -13 203 2 4 1142 437 268 0 9 chr5 73026258 73026371 -79510888 + PB1D7 SINE Alu 1 112 -8 4 1142 301 330 62 52 chr5 73026887 73027239 -79510020 - MTEb LTR MaLR -4 375 1 4 1142 253 72 42 42 chr5 73027893 73027965 -79509294 + (TTGG)n Simple_repeat Simple_repeat 2 73 0 4 1142 363 245 10 31 chr5 73028056 73028153 -79509106 + RSINE1 SINE B4 3 97 -68 4 1142 1317 102 21 0 chr5 73028203 73028389 -79508870 - B2_Mm2 SINE B2 -5 190 1 4 1142 1235 49 12 0 chr5 73028661 73028823 -79508436 + (TCTCCC)n Simple_repeat Simple_repeat 4 167 0 5 1142 713 201 14 0 chr5 73028855 73028994 -79508265 - B1F SINE Alu -8 141 1 5 1142 231 255 29 48 chr5 73029251 73029354 -79507905 + MLT1A LTR MaLR 240 340 -34 5 1142 246 288 203 0 chr5 73029355 73029508 -79507751 - MER2 DNA MER2_type -120 225 42 5 1142 201 158 26 0 chr5 73029698 73029736 -79507523 + (TCTG)n Simple_repeat Simple_repeat 1 39 0 5 1142 889 189 52 16 chr5 73029798 73029992 -79507267 - URR1A DNA MER1_type -25 201 1 5 1142 3205 70 0 2 chr5 73030575 73030976 -79506283 - MTB LTR MaLR 0 400 1 5 1142 561 234 0 72 chr5 73030981 73031133 -79506126 + B1_Mur1 SINE Alu 3 143 -6 5 1142 366 143 0 0 chr5 73031179 73031242 -79506017 + (CATA)n Simple_repeat Simple_repeat 2 64 0 5 1142 313 146 0 0 chr5 73031568 73031616 -79505643 - B3A SINE B2 -149 49 2 5 1142 1532 201 43 3 chr5 73032125 73032425 -79504834 + Lx5 LINE L1 6738 7049 -1 6 1142 239 291 18 35 chr5 73032486 73032600 -79504659 + B4A SINE B4 8 119 -173 6 1142 620 196 35 5 chr5 73032728 73033127 -79504132 + (CA)n Simple_repeat Simple_repeat 1 411 0 6 1142 765 22 0 0 chr5 73034375 73034466 -79502793 + (TTC)n Simple_repeat Simple_repeat 3 93 0 6 1142 206 337 54 11 chr5 73035441 73035534 -79501725 - L2a LINE L2 -15 3411 3315 6 1142 581 243 22 48 chr5 73035797 73036026 -79501233 - L2 LINE L2 -660 2759 2537 6 1142 298 323 37 44 chr5 73036329 73036465 -79500794 - B3A SINE B2 -44 154 20 6 1142 247 340 64 0 chr5 73037516 73037610 -79499649 + B4A SINE B4 193 292 0 6 1142 24 32 0 0 chr5 73037747 73037778 -79499481 + AT_rich Low_complexity Low_complexity 1 31 0 6 1142 238 203 67 17 chr5 73040009 73040069 -79497190 - URR1B DNA MER1_type -1 224 162 6 1142 1145 224 5 0 chr5 73041575 73041789 -79495470 + B3 SINE B2 1 215 -1 7 1142 300 70 0 0 chr5 73041869 73041912 -79495347 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1142 3424 95 127 21 chr5 73042372 73042900 -79494359 + MT2B2 LTR ERVL 1 584 0 7 1142 198 0 0 0 chr5 73043575 73043597 -79493662 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 7 1142 497 264 54 0 chr5 73043597 73043726 -79493533 - B1_Mur1 SINE Alu -13 136 1 7 1142 386 172 19 123 chr5 73043910 73044016 -79493243 + MT2B LTR ERVL 162 256 -345 7 1142 727 156 33 0 chr5 73043925 73044047 -79493212 + B1_Mus1 SINE Alu 8 133 -15 7 1142 262 229 29 0 chr5 73044192 73044262 -79492997 - ID4 SINE ID -10 73 2 7 1142 221 119 24 0 chr5 73045249 73045291 -79491968 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 7 1142 210 71 0 0 chr5 73045440 73045468 -79491791 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 7 1142 2181 104 6 38 chr5 73045817 73046157 -79491102 + ORR1A4 LTR MaLR 1 329 0 8 1142 471 319 78 16 chr5 73046277 73046468 -79490791 + ID_B1 SINE B4 3 205 -19 8 1142 234 118 0 68 chr5 73048684 73048757 -79488502 + T-rich Low_complexity Low_complexity 1 68 0 8 1142 1097 151 48 14 chr5 73052331 73052540 -79484719 - B3 SINE B2 0 216 1 8 1142 700 210 140 0 chr5 73053005 73053191 -79484068 + B3 SINE B2 1 212 -4 8 1142 22 0 0 0 chr5 73053195 73053217 -79484042 + AT_rich Low_complexity Low_complexity 1 22 0 8 1142 987 246 5 0 chr5 73053453 73053668 -79483591 + B3 SINE B2 1 216 0 8 1142 216 0 0 0 chr5 73053893 73053917 -79483342 + (CTTG)n Simple_repeat Simple_repeat 2 25 0 8 1142 219 185 0 18 chr5 73055368 73055423 -79481836 + (CAAA)n Simple_repeat Simple_repeat 4 57 0 8 1142 354 45 0 0 chr5 73055525 73055569 -79481690 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1142 2412 75 14 11 chr5 73055806 73056157 -79481102 + MTB LTR MaLR 1 352 -48 9 1142 1125 224 47 25 chr5 73056156 73056431 -79480828 - MTD LTR MaLR -137 282 2 9 1142 333 0 0 0 chr5 73057005 73057042 -79480217 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1142 787 300 11 57 chr5 73057044 73057327 -79479932 - B4 SINE B4 -20 272 3 9 1142 228 135 0 0 chr5 73058192 73058229 -79479030 + (A)n Simple_repeat Simple_repeat 1 37 0 9 1142 248 0 31 0 chr5 73058261 73058293 -79478966 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 9 1142 379 242 31 31 chr5 73058294 73058392 -79478867 - PB1D10 SINE Alu -10 107 10 9 1142 270 0 0 0 chr5 73059555 73059585 -79477674 + (A)n Simple_repeat Simple_repeat 1 30 0 9 1142 188 122 24 0 chr5 73060139 73060180 -79477079 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 9 1142 389 305 0 0 chr5 73060233 73060338 -79476921 - PB1D10 SINE Alu -7 110 6 9 1142 229 286 40 101 chr5 73060248 73060396 -79476863 - MT2B LTR ERVL -350 251 113 1 1142 186 43 0 0 chr5 73061809 73061832 -79475427 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 1142 222 203 133 17 chr5 73061976 73062036 -79475223 + ID4 SINE ID 7 73 -10 1 1142 279 0 0 0 chr5 73062963 73062994 -79474265 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1142 525 220 75 58 chr5 73063104 73063292 -79473967 + B4A SINE B4 102 292 0 1 1142 253 194 51 19 chr5 73063329 73063487 -79473772 + (CA)n Simple_repeat Simple_repeat 1 163 0 1 1142 349 179 42 24 chr5 73063533 73063699 -79473560 + (CA)n Simple_repeat Simple_repeat 1 169 0 1 1142 3376 127 31 120 chr5 73064182 73064949 -79472310 + RMER6A LTR ERVK 58 756 0 1 1142 872 257 13 146 chr5 73064949 73065328 -79471931 - MTE2a LTR MaLR -33 346 19 1 1142 574 244 65 30 chr5 73065751 73065937 -79471322 + B3A SINE B2 2 184 -11 1 1142 408 128 0 0 chr5 73066148 73066226 -79471033 + (GA)n Simple_repeat Simple_repeat 2 79 0 1 1142 273 98 0 0 chr5 73066526 73066567 -79470692 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1142 929 163 0 7 chr5 73066876 73067024 -79470235 + B1_Mus1 SINE Alu 1 147 -1 1 1142 355 357 61 19 chr5 73067690 73067953 -79469306 + MLT1A LTR MaLR 23 296 -78 1 1142 960 269 93 9 chr5 73068090 73068435 -79468824 - MTEa LTR MaLR 0 379 6 1 1142 1398 187 65 4 chr5 73068715 73068994 -79468265 + ORR1C1 LTR MaLR 1 296 -82 1 1142 951 323 91 31 chr5 73069058 73069544 -79467715 - RMER1C Other Other -444 898 384 1 1142 208 182 18 18 chr5 73069559 73069615 -79467644 + C-rich Low_complexity Low_complexity 3 58 0 1 1142 243 244 21 104 chr5 73069809 73069905 -79467354 - RMER1C Other Other -1215 127 40 1 1142 385 227 31 10 chr5 73069970 73070068 -79467191 - RMER1B Other Other -916 150 51 1 1142 291 345 43 14 chr5 73070111 73070252 -79467007 + LTR52 LTR ERVL 14 158 -263 1 1142 683 246 7 14 chr5 73070648 73070796 -79466463 - B1F2 SINE Alu -2 147 1 1 1142 1822 127 61 80 chr5 73070831 73071192 -79466067 + ORR1B1 LTR MaLR 41 394 0 1 1142 655 259 63 44 chr5 73071581 73071759 -79465500 - B4A SINE B4 -15 277 93 1 1142 324 0 0 0 chr5 73071759 73071795 -79465464 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1142 655 259 63 44 chr5 73071795 73071887 -79465372 - B4A SINE B4 -200 92 3 1 1142 207 0 0 0 chr5 73072112 73072135 -79465124 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1142 1109 78 7 0 chr5 73073451 73073605 -79463654 + B2_Mm1a SINE B2 1 155 -38 1 1142 243 0 0 0 chr5 73073606 73073633 -79463626 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1142 282 56 0 0 chr5 73074017 73074053 -79463206 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1142 1030 210 29 0 chr5 73074567 73074772 -79462487 + B3 SINE B2 1 211 -5 1 1142 816 246 87 21 chr5 73075744 73075985 -79461274 - B4 SINE B4 -2 290 34 1 1142 309 109 0 0 chr5 73076223 73076269 -79460990 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1142 520 237 172 56 chr5 73076749 73076999 -79460260 + MER31B LTR ERV1 115 393 -73 1 1142 1884 137 286 5 chr5 73077016 73077436 -79459823 + MT2B LTR ERVL 2 545 -56 1 1142 1157 62 11 22 chr5 73077436 73077618 -79459641 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1142 1884 137 286 5 chr5 73077618 73077630 -79459629 + MT2B LTR ERVL 546 556 -45 1 1142 417 39 0 0 chr5 73077632 73077683 -79459576 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 1 1142 1171 45 17 22 chr5 73077694 73077875 -79459384 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1142 317 118 0 0 chr5 73077875 73077926 -79459333 + MT2B LTR ERVL 534 584 0 1 1142 234 270 0 0 chr5 73077930 73077993 -79459266 + MER31B LTR ERV1 395 457 -9 1 1142 312 27 0 0 chr5 73078402 73078439 -79458820 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 1 1142 301 300 12 0 chr5 73078809 73078889 -79458370 - ID4 SINE ID 0 83 3 1 1142 845 231 43 33 chr5 73078956 73079166 -79458093 - B3 SINE B2 -2 214 3 1 1142 333 0 0 0 chr5 73079586 73079623 -79457636 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1142 1371 96 37 0 chr5 73079644 73079831 -79457428 - B2_Mm2 SINE B2 -1 194 1 1 1142 1995 153 56 8 chr5 73079929 73080232 -79457027 - ORR1B1 LTR MaLR -1 393 73 1 1142 3425 33 2 5 chr5 73080232 73080629 -79456630 - MTA_Mm LTR MaLR 0 396 1 1 1142 1995 153 56 8 chr5 73080629 73080700 -79456559 - ORR1B1 LTR MaLR -322 72 2 1 1142 463 301 142 30 chr5 73080888 73081323 -79455936 + L1ME3A LINE L1 5492 5975 -198 1 1142 646 193 0 90 chr5 73081341 73081501 -79455758 + B1_Mur2 SINE Alu 8 146 -2 1 1142 1063 273 69 9 chr5 73081725 73082058 -79455201 + Lx7 LINE L1 6804 7156 -540 1 1142 2081 111 69 20 chr5 73082058 73082096 -79455163 - ORR1B2 LTR MaLR -2 365 332 1 1142 3152 108 0 5 chr5 73082096 73082532 -79454727 + RLTR10C LTR ERVK 1 434 -2 1 1142 2081 111 69 20 chr5 73082532 73082841 -79454418 - ORR1B2 LTR MaLR -36 331 1 1 1142 465 304 38 22 chr5 73082841 73083026 -79454233 + Lx7 LINE L1 7151 7338 -358 1 1142 241 261 62 62 chr5 73082996 73083221 -79454038 + Lx7 LINE L1 7455 7679 -17 1 1142 1024 161 22 11 chr5 73083231 73083413 -79453846 - B2_Mm2 SINE B2 -11 184 1 1 1142 277 333 0 0 chr5 73083444 73083525 -79453734 - ID4_ SINE ID -1 82 2 1 1142 2588 223 66 9 chr5 73083916 73084476 -79452783 - Lx6 LINE L1 -41 7419 6828 1 1142 2357 175 14 28 chr5 73084695 73085293 -79451966 + Lx6 LINE L1 5504 6093 -1367 1 1142 3429 221 60 7 chr5 73085292 73086009 -79451250 + Lx6 LINE L1 6664 7418 -42 1 1142 461 150 35 123 chr5 73086255 73086339 -79450920 - B1_Mur2 SINE Alu -39 110 27 1 1142 1813 137 16 13 chr5 73086339 73086642 -79450617 + Lx4A LINE L1 6736 7039 -19 1 1142 192 77 0 0 chr5 73086642 73086668 -79450591 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1 1142 1164 43 0 0 chr5 73086670 73086808 -79450451 + B1_Mus2 SINE Alu 4 141 -6 1 1142 270 0 0 0 chr5 73086811 73086841 -79450418 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1 1142 461 150 35 123 chr5 73086841 73086862 -79450397 - B1_Mur2 SINE Alu -123 26 8 1 1142 295 296 74 0 chr5 73088133 73088241 -79449018 - MER3 DNA MER1_type -78 131 16 1 1142 370 333 0 0 chr5 73089124 73089256 -79448003 - Tigger5 DNA MER2_type -3 2403 2272 1 1142 245 326 246 0 chr5 73089250 73089425 -79447834 - Tigger5 DNA MER2_type -2188 218 1 1 1142 198 0 0 0 chr5 73089688 73089710 -79447549 + (CCA)n Simple_repeat Simple_repeat 1 22 0 1 1142 2199 66 4 0 chr5 73090989 73091262 -79445997 - L1Md_F2 LINE L1 -308 6274 6001 1 1142 2053 39 65 8 chr5 73091262 73091551 -79445708 + L1_Mus1 LINE L1 6292 6567 0 1 1142 951 62 13 40 chr5 73091563 73091713 -79445546 + B1_Mm SINE Alu 2 147 0 1 1142 208 0 62 0 chr5 73091718 73091750 -79445509 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1142 249 33 0 0 chr5 73092570 73092600 -79444659 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 1142 1049 92 52 0 chr5 73092600 73092753 -79444506 - B2_Mm1t SINE B2 -30 163 3 1 1142 1188 193 9 0 chr5 73092863 73093075 -79444184 + B3 SINE B2 3 216 0 1 1142 765 178 0 0 chr5 73093100 73093235 -79444024 + B1_Mur2 SINE Alu 9 143 -6 1 1142 740 11 11 0 chr5 73094160 73094249 -79443010 + (GA)n Simple_repeat Simple_repeat 2 91 0 1 1142 216 0 0 0 chr5 73094402 73094426 -79442833 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1142 1115 65 0 0 chr5 73094724 73094862 -79442397 - B1_Mm SINE Alu -9 138 1 1 1142 722 197 212 6 chr5 73095173 73095352 -79441907 - B3 SINE B2 0 216 1 1 1142 306 282 35 35 chr5 73096162 73096276 -79440983 - MER5B DNA MER1_type -55 123 10 1 1142 1849 204 54 22 chr5 73096409 73096628 -79440631 + Lx9 LINE L1 7225 7440 -204 1 1142 2869 166 57 27 chr5 73096628 73097186 -79440073 + RMER15 LTR ERVL 1 575 0 1 1142 1849 204 54 22 chr5 73097186 73097373 -79439886 + Lx9 LINE L1 7441 7644 0 1 1142 458 185 58 69 chr5 73098021 73098195 -79439064 + RMER21B LTR ERV1 323 494 -348 1 1142 225 271 14 28 chr5 73098348 73098420 -79438839 + A-rich Low_complexity Low_complexity 4 74 0 1 1142 722 244 45 10 chr5 73099543 73099742 -79437517 - B3 SINE B2 -10 206 1 1 1142 23 54 0 0 chr5 73099809 73099846 -79437413 + AT_rich Low_complexity Low_complexity 1 37 0 1 1142 214 245 0 0 chr5 73099923 73099972 -79437287 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 1 1142 239 119 0 45 chr5 73100457 73100501 -79436758 - RMER21A LTR ERV1 -65 882 841 1 1142 337 311 40 7 chr5 73100548 73100697 -79436562 + L2 LINE L2 2295 2448 -971 1 1142 198 0 0 0 chr5 73100703 73100725 -79436534 + (CACG)n Simple_repeat Simple_repeat 1 22 0 1 1142 287 298 32 11 chr5 73101332 73101427 -79435832 - MIR SINE MIR -145 117 21 1 1142 588 225 20 34 chr5 73102504 73102651 -79434608 + B3A SINE B2 5 149 -49 1 1142 443 330 78 22 chr5 73102652 73103011 -79434248 + L1M5 LINE L1 5348 5726 -447 1 1142 201 24 98 0 chr5 73103197 73103238 -79434021 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1 1142 333 0 0 0 chr5 73103957 73103994 -79433265 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 1 1142 215 61 0 29 chr5 73104661 73104695 -79432564 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1142 376 79 234 13 chr5 73105534 73105611 -79431648 + B1_Mus2 SINE Alu 54 147 0 1 1142 225 0 0 0 chr5 73106323 73106348 -79430911 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 1 1142 243 88 0 0 chr5 73108862 73108896 -79428363 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1142 1240 41 0 0 chr5 73108896 73109042 -79428217 - B1_Mus2 SINE Alu 0 147 2 1 1142 775 276 21 10 chr5 73109321 73109481 -79427778 + B3A SINE B2 2 164 -34 1 1142 468 51 0 0 chr5 73109481 73109540 -79427719 + (TC)n Simple_repeat Simple_repeat 1 59 0 1 1142 330 115 0 0 chr5 73109540 73109591 -79427668 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1142 775 276 21 10 chr5 73109591 73109623 -79427636 + B3A SINE B2 165 196 -2 1 1142 949 221 142 28 chr5 73109758 73110047 -79427212 + MTD LTR MaLR 84 405 -14 1 1142 1839 127 45 14 chr5 73110137 73110507 -79426752 - MTC LTR MaLR -8 399 1 1 1142 378 0 0 0 chr5 73111222 73111264 -79425995 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1142 330 241 0 0 chr5 73111266 73111351 -79425908 - L1_Mur2 LINE L1 -2061 4079 3972 1 1142 1058 286 10 14 chr5 73112361 73112652 -79424607 + B4A SINE B4 1 290 -2 1 1142 360 43 0 0 chr5 73112657 73112703 -79424556 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1142 569 148 183 0 chr5 73112703 73112845 -79424414 - L1_Mur3 LINE L1 -1827 4053 3886 2 1142 248 313 59 20 chr5 73112860 73113013 -79424246 + Lx8 LINE L1 6021 6179 -1294 2 1142 279 202 0 0 chr5 73113037 73113121 -79424138 + CT-rich Low_complexity Low_complexity 2 85 0 2 1142 3846 269 63 37 chr5 73113124 73114368 -79422891 + Lx8 LINE L1 6197 7472 -1 2 1142 737 227 29 58 chr5 73114383 73114589 -79422670 - ORR1D1 LTR MaLR -8 366 167 2 1142 676 33 11 11 chr5 73114592 73114684 -79422575 + (GGGA)n Simple_repeat Simple_repeat 1 92 0 2 1142 1199 124 5 25 chr5 73115120 73115319 -79421940 + URR1B DNA MER1_type 2 196 -29 2 1142 500 239 0 0 chr5 73116487 73116596 -79420663 + MTE2a LTR MaLR 213 321 -58 2 1142 2900 172 72 7 chr5 73117625 73118163 -79419096 + Lx5 LINE L1 6478 7050 0 2 1142 671 219 62 0 chr5 73118559 73118719 -79418540 - MTE2a LTR MaLR 0 379 210 2 1142 739 244 85 33 chr5 73118717 73118981 -79418278 + MT2B LTR ERVL 195 596 -5 2 1142 450 272 53 76 chr5 73119010 73119181 -79418078 - MTE2a LTR MaLR -212 167 1 2 1142 937 48 0 0 chr5 73119646 73119770 -79417489 + B1_Mm SINE Alu 24 147 0 2 1142 21 36 0 0 chr5 73120087 73120115 -79417144 + AT_rich Low_complexity Low_complexity 1 28 0 2 1142 184 300 119 34 chr5 73120357 73120533 -79416726 + L2a LINE L2 3183 3373 -53 2 1142 4362 50 0 0 chr5 73121825 73122343 -79414916 + L1_Mus2 LINE L1 6047 6564 -2 2 1142 270 257 154 29 chr5 73123330 73123434 -79413825 - PB1D10 SINE Alu 0 117 1 2 1142 198 0 0 0 chr5 73123624 73123646 -79413613 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1142 384 59 0 0 chr5 73124109 73124160 -79413099 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2 1142 489 34 0 0 chr5 73124161 73124220 -79413039 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 2 1142 618 300 42 21 chr5 73124919 73125157 -79412102 - B4A SINE B4 -45 247 5 2 1142 216 143 0 0 chr5 73125990 73126032 -79411227 + (CCCCCA)n Simple_repeat Simple_repeat 3 44 0 2 1142 192 107 0 0 chr5 73126215 73126243 -79411016 - MIRb SINE MIR -12 256 229 2 1142 190 374 22 11 chr5 73126218 73126310 -79410949 - L2a LINE L2 -19 3407 3315 2 1142 973 141 11 6 chr5 73126582 73126760 -79410499 + GA-rich Low_complexity Low_complexity 1 179 0 2 1142 665 238 72 111 chr5 73128668 73128848 -79408411 + B3 SINE B2 13 186 -30 2 1142 234 0 0 0 chr5 73129837 73129863 -79407396 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1142 500 244 130 0 chr5 73130219 73130350 -79406909 + B1_Mur1 SINE Alu 2 149 0 2 1142 224 189 0 0 chr5 73130351 73130388 -79406871 + polypurine Low_complexity Low_complexity 3 39 0 2 1142 198 118 0 0 chr5 73130441 73130475 -79406784 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1142 225 0 0 0 chr5 73130679 73130704 -79406555 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1142 2650 24 117 0 chr5 73130732 73131066 -79406193 - L1Md_F3 LINE L1 -1 6583 6211 2 1142 247 298 258 0 chr5 73131139 73131290 -79405969 + L2a LINE L2 1891 2080 -1339 2 1142 1445 60 44 0 chr5 73131583 73131766 -79405493 - B2_Mm2 SINE B2 -4 191 1 2 1142 465 122 0 0 chr5 73131856 73131930 -79405329 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1142 198 191 0 0 chr5 73132380 73132422 -79404837 + (CACG)n Simple_repeat Simple_repeat 1 42 0 2 1142 459 264 57 13 chr5 73132457 73132614 -79404645 + L2a LINE L2 2719 2882 -537 2 1142 504 336 91 36 chr5 73132667 73133105 -79404154 + L2a LINE L2 2965 3426 0 2 1142 33 25 0 0 chr5 73133505 73133545 -79403714 + AT_rich Low_complexity Low_complexity 1 40 0 2 1142 340 320 35 106 chr5 73134429 73134656 -79402603 - MER20 DNA MER1_type -8 211 1 2 1142 1100 45 8 0 chr5 73134989 73135121 -79402138 + B1_Mus2 SINE Alu 2 134 -13 2 1142 662 295 19 83 chr5 73135477 73135885 -79401374 + MTEb LTR MaLR 1 368 -11 2 1142 1275 34 0 0 chr5 73136057 73136204 -79401055 + B1_Mus1 SINE Alu 1 147 -1 2 1142 210 91 0 0 chr5 73136204 73136237 -79401022 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 1142 653 292 123 53 chr5 73136584 73136782 -79400477 - MLT2D LTR ERVL -50 364 140 2 1142 2678 64 0 12 chr5 73136782 73137113 -79400146 + ORR1A2 LTR MaLR 1 327 0 2 1142 653 292 123 53 chr5 73137113 73137254 -79400005 - MLT2D LTR ERVL -275 139 1 2 1142 537 156 0 0 chr5 73137363 73137459 -79399800 + (CA)n Simple_repeat Simple_repeat 1 96 0 2 1143 233 250 161 11 chr5 73139047 73139140 -79398119 - B1F2 SINE Alu -6 143 30 2 1143 233 191 0 0 chr5 73139185 73139227 -79398032 + C-rich Low_complexity Low_complexity 1 42 0 2 1143 331 257 57 9 chr5 73140151 73140257 -79397002 - B1_Mur3 SINE Alu -2 147 37 2 1143 249 33 0 0 chr5 73140554 73140584 -79396675 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 2 1143 898 158 202 6 chr5 73140883 73141061 -79396198 - B3 SINE B2 -3 213 1 2 1143 2845 122 33 14 chr5 73141135 73141644 -79395615 - RLTR28 LTR ERVL -5 519 1 2 1143 282 331 140 6 chr5 73141738 73141902 -79395357 - MLT1F2 LTR MaLR -374 186 1 2 1143 390 159 0 0 chr5 73142117 73142186 -79395073 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1143 243 0 0 0 chr5 73142685 73142712 -79394547 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 2 1143 216 97 0 0 chr5 73143044 73143075 -79394184 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2 1143 757 116 82 8 chr5 73144465 73144587 -79392672 + B1_Mus2 SINE Alu 1 131 -16 2 1143 467 91 54 9 chr5 73144587 73144698 -79392561 + (CAGA)n Simple_repeat Simple_repeat 4 119 0 2 1143 844 312 14 10 chr5 73144827 73145115 -79392144 + B4A SINE B4 2 290 -2 2 1143 3121 166 49 18 chr5 73145654 73146269 -79390990 + RLTR26 LTR ERVK 1 634 -8 2 1143 322 194 15 0 chr5 73146874 73146941 -79390318 + PB1D9 SINE Alu 53 120 0 2 1143 28 79 0 0 chr5 73146980 73147043 -79390216 + AT_rich Low_complexity Low_complexity 1 63 0 2 1143 622 229 23 0 chr5 73151073 73151204 -79386055 - ID_B1 SINE B4 -7 217 84 2 1143 740 266 102 12 chr5 73151260 73151515 -79385744 - B4 SINE B4 -13 279 2 2 1143 1096 204 10 10 chr5 73155133 73155341 -79381918 + B3 SINE B2 5 212 -4 2 1143 201 93 18 36 chr5 73157628 73157684 -79379575 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 2 1143 673 164 97 0 chr5 73157695 73157829 -79379430 - B1_Mus2 SINE Alu 0 147 1 2 1143 975 224 20 63 chr5 73158524 73158824 -79378435 + L1MB8 LINE L1 5879 6165 -13 2 1143 248 302 96 125 chr5 73159219 73159355 -79377904 + Tigger5 DNA MER2_type 106 237 -2169 2 1143 293 379 9 0 chr5 73159355 73159471 -79377788 + Tigger5 DNA MER2_type 2290 2406 0 2 1143 251 273 13 13 chr5 73159580 73159658 -79377601 - PB1 SINE Alu -17 110 33 2 1143 291 28 0 0 chr5 73160204 73160240 -79377019 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 2 1143 415 211 66 58 chr5 73160240 73160361 -79376898 + B1_Mur3 SINE Alu 18 139 -10 2 1143 288 0 0 0 chr5 73160362 73160394 -79376865 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2 1143 1314 108 5 27 chr5 73160590 73160809 -79376450 + RLTR15 LTR ERVK 117 330 -29 2 1143 217 250 0 0 chr5 73161694 73161738 -79375521 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 2 1143 387 319 19 143 chr5 73161919 73162234 -79375025 + B4 SINE B4 13 288 -4 2 1143 249 33 0 0 chr5 73162311 73162341 -79374918 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1143 207 0 0 0 chr5 73163281 73163304 -79373955 + (TAA)n Simple_repeat Simple_repeat 1 23 0 2 1143 235 337 35 0 chr5 73163412 73163498 -79373761 - MIR SINE MIR -61 147 59 2 1143 532 289 10 48 chr5 73164119 73164326 -79372933 + MLT1B LTR MaLR 60 258 -132 2 1143 2537 164 81 2 chr5 73164372 73164818 -79372441 - RLTR28B LTR ERVL 0 481 1 2 1143 226 310 18 9 chr5 73165487 73165601 -79371658 - MamGypLTR1a LTR Gypsy -2 782 668 2 1143 2071 189 71 32 chr5 73166116 73166581 -79370678 + RMER15 LTR ERVL 1 483 -92 2 1143 432 0 0 0 chr5 73166601 73166649 -79370610 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1143 300 91 0 0 chr5 73167081 73167125 -79370134 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1143 2951 118 42 51 chr5 73167517 73168044 -79369215 + RLTR28 LTR ERVL 3 524 0 2 1143 297 0 0 0 chr5 73168473 73168506 -79368753 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1143 555 53 0 0 chr5 73168506 73168580 -79368679 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1143 333 338 58 10 chr5 73171397 73171603 -79365656 + L1MC4 LINE L1 6692 6907 -1135 2 1143 221 216 20 0 chr5 73172301 73172352 -79364907 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 1143 215 246 57 14 chr5 73172463 73172533 -79364726 + ID SINE ID 11 83 -141 2 1143 648 175 16 28 chr5 73172552 73172734 -79364525 + GA-rich Low_complexity Low_complexity 1 180 0 2 1143 359 336 8 17 chr5 73172843 73172961 -79364298 + RSINE1 SINE B4 1 117 -48 2 1143 427 69 28 0 chr5 73172986 73173058 -79364201 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1143 1743 222 39 8 chr5 73174299 73174767 -79362492 + RLTR16 LTR ERVK 2 483 -22 2 1143 920 285 109 32 chr5 73175296 73175735 -79361524 + Tigger7 DNA MER2_type 1 473 -2018 2 1143 287 275 35 28 chr5 73175745 73175887 -79361372 + Tigger7 DNA MER2_type 2276 2418 -73 2 1143 683 181 14 0 chr5 73176396 73176540 -79360719 + GA-rich Low_complexity Low_complexity 3 148 0 2 1143 1512 52 0 25 chr5 73176551 73176747 -79360512 + B2_Mm1a SINE B2 2 192 -1 2 1143 468 0 0 0 chr5 73177888 73177940 -79359319 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1143 801 272 128 9 chr5 73178284 73178503 -79358756 - B4 SINE B4 0 292 48 2 1143 2456 166 47 11 chr5 73178816 73179266 -79357993 - RMER4A LTR ERVK 0 466 1 2 1143 516 244 16 16 chr5 73180618 73180739 -79356520 + B4 SINE B4 10 130 -162 2 1143 11782 72 13 70 chr5 73180957 73182915 -79354344 + RLTR22_Mur LTR ERVK 1 1845 -3 3 1143 28 29 0 0 chr5 73183227 73183262 -79353997 + GC_rich Low_complexity Low_complexity 1 35 0 3 1143 295 280 28 9 chr5 73183647 73183755 -79353504 + B1F SINE Alu 19 128 -21 3 1143 673 203 0 0 chr5 73183952 73184070 -79353189 + B1_Mur2 SINE Alu 4 121 -28 3 1143 197 200 36 0 chr5 73184227 73184282 -79352977 + CT-rich Low_complexity Low_complexity 1 57 0 3 1143 332 194 0 0 chr5 73184880 73184942 -79352317 + B1_Mur2 SINE Alu 68 129 -20 3 1143 761 164 15 15 chr5 73185351 73185487 -79351772 + B1_Mus1 SINE Alu 5 140 -8 3 1143 394 248 9 9 chr5 73185617 73185727 -79351532 + MIR SINE MIR 127 236 -26 3 1143 189 0 0 0 chr5 73186634 73186655 -79350604 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 3 1143 401 200 9 95 chr5 73186768 73186781 -79350478 + MT2B LTR ERVL 152 154 -447 3 1143 691 145 2 5 chr5 73186781 73186904 -79350355 + B1_Mus1 SINE Alu 1 120 0 3 1143 453 252 7 59 chr5 73186904 73186918 -79350341 + ID_B1 SINE B4 82 211 -13 3 1143 252 0 0 0 chr5 73186918 73186946 -79350313 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1143 453 252 7 59 chr5 73186946 73186959 -79350300 + ID_B1 SINE B4 212 224 0 3 1143 427 199 170 7 chr5 73187337 73187484 -79349775 + B3A SINE B2 2 172 -26 3 1143 268 96 19 37 chr5 73187910 73187964 -79349295 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 3 1143 471 235 99 13 chr5 73188531 73188682 -79348577 + MTEa LTR MaLR 209 372 -7 3 1143 1135 75 0 0 chr5 73189331 73189477 -79347782 + B1_Mus2 SINE Alu 2 147 0 3 1143 189 0 0 0 chr5 73189477 73189498 -79347761 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1143 280 276 22 9 chr5 73190361 73190452 -79346807 + B4A SINE B4 1 92 -200 3 1143 1405 189 68 0 chr5 73190452 73190733 -79346526 + ORR1D1 LTR MaLR 1 300 -74 3 1143 251 261 58 0 chr5 73192958 73193027 -79344232 + B4 SINE B4 4 76 -216 3 1143 342 115 0 0 chr5 73193028 73193080 -79344179 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1143 3000 91 31 14 chr5 73193282 73193726 -79343533 + RLTR11B LTR ERVK 1 452 -1 3 1143 269 109 0 21 chr5 73194005 73194052 -79343207 + (TCC)n Simple_repeat Simple_repeat 3 48 0 3 1143 600 207 103 7 chr5 73194056 73194192 -79343067 - B1F2 SINE Alu 0 149 1 3 1143 1049 143 152 5 chr5 73194592 73194789 -79342470 - URR1A DNA MER1_type 0 226 1 3 1143 895 178 49 0 chr5 73195136 73195321 -79341938 - URR1A DNA MER1_type -20 206 13 3 1143 262 273 106 71 chr5 73195325 73195550 -79341709 + MTEa LTR MaLR 123 377 -2 3 1143 229 185 75 30 chr5 73196402 73196469 -79340790 - ID4_ SINE ID -13 70 1 3 1143 192 343 79 53 chr5 73196511 73196625 -79340634 - L2b LINE L2 -234 3141 3025 3 1143 343 326 117 96 chr5 73196857 73197284 -79339975 + MLT1J LTR MaLR 6 441 -71 3 1143 708 207 0 0 chr5 73197825 73197960 -79339299 + B1_Mur1 SINE Alu 2 136 -13 3 1143 1250 43 6 0 chr5 73198051 73198213 -79339046 + B2_Mm2 SINE B2 1 163 -32 3 1143 231 36 0 0 chr5 73198214 73198242 -79339017 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 3 1143 291 277 143 8 chr5 73198331 73198430 -79338829 + PB1D10 SINE Alu 1 108 -12 3 1143 195 69 0 0 chr5 73198459 73198488 -79338771 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1143 1854 64 4 0 chr5 73198555 73198791 -79338468 + L1Md_F3 LINE L1 6344 6580 -4 3 1143 297 0 0 0 chr5 73199090 73199123 -79338136 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1143 579 312 85 13 chr5 73200451 73200675 -79336584 + MER68 LTR ERVL 324 563 0 3 1143 205 301 113 28 chr5 73200691 73200797 -79336462 + MIRc SINE MIR 20 134 -134 3 1143 1085 280 84 47 chr5 73201432 73201937 -79335322 + L1MB7 LINE L1 5645 6173 -10 3 1143 24 32 0 0 chr5 73201980 73202011 -79335248 + AT_rich Low_complexity Low_complexity 1 31 0 3 1143 280 155 299 5 chr5 73203369 73203456 -79333803 + B1F SINE Alu 1 104 -13 3 1143 235 328 0 15 chr5 73204622 73204690 -79332569 + L2b LINE L2 3012 3078 -297 3 1143 464 204 56 42 chr5 73204789 73204932 -79332327 + Lx5 LINE L1 6905 7049 -1 3 1143 558 0 0 0 chr5 73205044 73205106 -79332153 + (TC)n Simple_repeat Simple_repeat 1 62 0 3 1143 225 0 0 0 chr5 73205232 73205257 -79332002 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1143 195 42 0 0 chr5 73205257 73205280 -79331979 + (CG)n Simple_repeat Simple_repeat 2 25 0 3 1143 320 301 7 59 chr5 73205589 73205741 -79331518 - MARNA DNA Mariner -155 431 288 3 1143 737 225 15 79 chr5 73206225 73206428 -79330831 + B3A SINE B2 9 198 0 3 1143 1138 195 0 0 chr5 73206761 73206971 -79330288 + B3 SINE B2 1 210 -6 3 1143 244 309 91 0 chr5 73207297 73207407 -79329852 + Tigger7 DNA MER2_type 2329 2448 -43 3 1143 549 80 0 0 chr5 73208015 73208090 -79329169 + (GA)n Simple_repeat Simple_repeat 1 75 0 3 1143 189 107 0 0 chr5 73208090 73208118 -79329141 + (CAAG)n Simple_repeat Simple_repeat 4 31 0 3 1143 522 132 16 40 chr5 73208340 73208466 -79328793 + RMER21B LTR ERV1 300 422 -420 3 1143 1393 71 0 0 chr5 73208466 73208648 -79328611 + L1Md_T LINE L1 6401 6582 0 3 1143 253 221 175 58 chr5 73208732 73208852 -79328407 + RMER21B LTR ERV1 418 551 -291 3 1143 338 107 18 0 chr5 73209761 73209817 -79327442 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1143 252 0 0 0 chr5 73209820 73209848 -79327411 + (CTACT)n Simple_repeat Simple_repeat 1 28 0 3 1143 232 305 0 0 chr5 73210011 73210070 -79327189 + MIRb SINE MIR 201 259 -9 3 1143 1874 132 13 10 chr5 73210109 73210414 -79326845 + Lx5 LINE L1 6707 7012 -38 3 1143 4994 52 2 0 chr5 73210626 73211226 -79326033 - L1_Mus2 LINE L1 0 6566 5966 3 1143 182 91 0 29 chr5 73211245 73211279 -79325980 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 1143 291 54 0 0 chr5 73211838 73211875 -79325384 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 3 1143 793 313 112 3 chr5 73212718 73213029 -79324230 + MER2 DNA MER2_type 1 345 0 3 1143 842 231 65 0 chr5 73213069 73213268 -79323991 - B3 SINE B2 -3 213 2 3 1143 186 167 0 0 chr5 73215032 73215068 -79322191 + (ATG)n Simple_repeat Simple_repeat 2 37 0 3 1143 287 254 14 14 chr5 73215485 73215557 -79321702 + B4 SINE B4 2 73 -219 3 1143 279 0 0 0 chr5 73215659 73215690 -79321569 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 1143 225 292 37 103 chr5 73216759 73216866 -79320393 - MER5B DNA MER1_type -20 158 59 3 1143 381 226 0 12 chr5 73217091 73217176 -79320083 + PB1D10 SINE Alu 27 110 -7 3 1143 246 62 0 0 chr5 73217176 73217208 -79320051 + (TAGG)n Simple_repeat Simple_repeat 1 32 0 3 1143 1028 48 44 38 chr5 73217208 73217702 -79319557 + (TAGA)n Simple_repeat Simple_repeat 1 496 0 3 1143 207 320 87 58 chr5 73218072 73218175 -79319084 - MIR3 SINE MIR -21 187 82 3 1143 370 267 65 24 chr5 73218459 73218582 -79318677 - B4A SINE B4 -156 136 9 3 1143 2871 131 122 24 chr5 73218634 73219167 -79318092 + RMER4B LTR ERVK 1 585 0 3 1143 268 213 122 6 chr5 73219167 73219251 -79318008 - B1_Mur1 SINE Alu -15 134 1 3 1143 448 322 172 20 chr5 73219699 73220105 -79317154 + HAL1 LINE L1 1066 1533 -974 3 1143 1098 255 168 12 chr5 73220628 73220950 -79316309 + RMER1B Other Other 44 415 -651 3 1143 628 270 172 10 chr5 73220934 73221132 -79316127 + RMER1A Other Other 15 244 -786 3 1143 3302 210 216 8 chr5 73221141 73221994 -79315265 + RMER1A Other Other 1 1030 0 3 1143 305 271 192 80 chr5 73222024 73222514 -79314745 + HAL1 LINE L1 1806 2350 -157 3 1143 426 238 8 54 chr5 73222817 73222946 -79314313 - MER57-int LTR ERV1 -270 7267 7145 3 1143 330 292 50 8 chr5 73223354 73223475 -79313784 - PB1 SINE Alu 0 127 2 3 1143 417 250 30 11 chr5 73223973 73224095 -79313164 - B1F1 SINE Alu -1 119 1 3 1143 1306 284 82 40 chr5 73224527 73225124 -79312135 + Lx8 LINE L1 6818 7439 -34 3 1143 453 103 0 0 chr5 73225124 73225192 -79312067 + (TATG)n Simple_repeat Simple_repeat 1 68 0 3 1143 22 56 0 0 chr5 73225465 73225501 -79311758 + AT_rich Low_complexity Low_complexity 1 36 0 3 1143 885 202 56 20 chr5 73227267 73227589 -79309670 + L1_Mur2 LINE L1 894 1213 -6515 3 1143 1092 79 0 0 chr5 73227589 73227728 -79309531 + B1_Mm SINE Alu 1 139 -8 3 1143 5023 131 17 2 chr5 73227728 73228626 -79308633 + L1_Mur2 LINE L1 1145 2029 -3848 3 1143 2546 211 155 57 chr5 73229127 73229912 -79307347 + Lx7 LINE L1 6835 7696 0 3 1143 321 307 79 0 chr5 73230819 73230920 -79306339 - PB1 SINE Alu -7 120 12 3 1143 513 306 8 0 chr5 73231527 73231661 -79305598 + B1F1 SINE Alu 1 135 -14 3 1143 325 53 18 18 chr5 73231663 73231720 -79305539 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 3 1143 216 0 0 0 chr5 73231739 73231763 -79305496 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1143 261 0 0 0 chr5 73232960 73232989 -79304270 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1143 433 270 296 0 chr5 73233237 73233463 -79303796 + L1MB5 LINE L1 4801 5093 -1053 3 1143 547 132 211 16 chr5 73233529 73233652 -79303607 - B1_Mus1 SINE Alu -1 147 1 3 1143 330 225 112 43 chr5 73233654 73233704 -79303555 + L1MB5 LINE L1 5082 5132 -1014 3 1143 1283 95 21 11 chr5 73233704 73233895 -79303364 + B2_Mm1t SINE B2 1 193 0 3 1143 330 225 112 43 chr5 73233895 73233960 -79303299 + L1MB5 LINE L1 5133 5205 -941 3 1143 1136 211 10 0 chr5 73233970 73234178 -79303081 + B3 SINE B2 1 210 -6 3 1143 314 292 11 0 chr5 73234280 73234369 -79302890 + PB1D10 SINE Alu 3 92 -25 3 1143 237 181 58 0 chr5 73234371 73234602 -79302657 + (CAACT)n Simple_repeat Simple_repeat 1 244 0 3 1143 337 99 42 0 chr5 73234649 73234720 -79302539 + (TCTCTG)n Simple_repeat Simple_repeat 3 76 0 3 1143 590 147 25 19 chr5 73234719 73234879 -79302380 + (CA)n Simple_repeat Simple_repeat 1 161 0 4 1143 684 215 67 49 chr5 73234885 73235110 -79302149 + Lx8 LINE L1 6903 7131 -342 4 1143 320 111 19 0 chr5 73235304 73235358 -79301901 + (GGAAA)n Simple_repeat Simple_repeat 1 55 0 4 1143 331 328 17 8 chr5 73235393 73235510 -79301749 + PB1 SINE Alu 6 123 -4 4 1143 876 274 147 43 chr5 73235511 73236249 -79301010 + L1MB5 LINE L1 5295 6134 -46 3 1143 682 269 74 0 chr5 73236623 73236839 -79300420 + Lx8 LINE L1 6893 7124 -349 4 1143 228 135 0 0 chr5 73236844 73236881 -79300378 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1143 651 227 38 19 chr5 73237022 73237179 -79300080 + RSINE1 SINE B4 6 165 0 4 1143 244 296 49 56 chr5 73237358 73237501 -79299758 - MLT1H2 LTR MaLR -304 185 44 4 1143 489 76 0 0 chr5 73237792 73237858 -79299401 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1143 225 108 0 0 chr5 73237969 73238006 -79299253 + (G)n Simple_repeat Simple_repeat 1 37 0 4 1143 1005 74 0 0 chr5 73238656 73238791 -79298468 + (ACTG)n Simple_repeat Simple_repeat 4 138 0 4 1143 332 244 119 24 chr5 73238865 73238991 -79298268 - B1F SINE Alu -8 141 4 4 1143 877 263 5 45 chr5 73239157 73239380 -79297879 + B3 SINE B2 2 215 -1 4 1143 438 20 0 0 chr5 73239409 73239460 -79297799 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 4 1143 322 269 284 28 chr5 73239877 73240095 -79297164 - B4 SINE B4 -18 274 1 4 1143 554 236 51 16 chr5 73240469 73240669 -79296590 - ORR1C2 LTR MaLR 0 394 175 4 1143 213 159 0 0 chr5 73240671 73240715 -79296544 + GA-rich Low_complexity Low_complexity 2 45 0 4 1143 371 264 109 12 chr5 73240750 73240915 -79296344 - ORR1C2 LTR MaLR -193 181 1 4 1143 244 323 128 39 chr5 73241428 73241653 -79295606 + L2 LINE L2 1919 2185 -1234 4 1143 1500 158 19 201 chr5 73241653 73242121 -79295138 + ORR1C2 LTR MaLR 1 383 -1 4 1143 244 323 128 39 chr5 73242121 73242378 -79294881 + L2 LINE L2 2186 2444 -975 4 1143 285 321 44 58 chr5 73242937 73243142 -79294117 + MLT1H LTR MaLR 346 547 -2 4 1143 184 329 62 41 chr5 73243149 73243295 -79293964 + L2 LINE L2 2693 2841 -578 4 1143 942 227 147 32 chr5 73243575 73243889 -79293370 + MTE2b LTR MaLR 23 372 -7 4 1143 423 227 0 0 chr5 73243933 73244030 -79293229 + PB1D10 SINE Alu 21 117 0 4 1143 677 204 30 56 chr5 73244048 73244245 -79293014 + B2_Mm2 SINE B2 1 192 -3 4 1143 338 252 71 0 chr5 73244656 73244768 -79292491 - PB1D9 SINE Alu -1 126 1 4 1143 366 269 118 0 chr5 73244880 73245049 -79292210 + MIRb SINE MIR 41 234 -28 4 1143 200 296 80 36 chr5 73245495 73245607 -79291652 + MIRc SINE MIR 17 133 -135 4 1143 190 386 48 14 chr5 73246681 73246828 -79290431 + L2c LINE L2 3024 3175 -212 4 1143 305 320 96 0 chr5 73247838 73247963 -79289296 - MLT1K LTR MaLR -354 241 105 4 1143 371 295 57 14 chr5 73248087 73248228 -79289031 + MIRb SINE MIR 34 180 -88 4 1143 813 141 17 22 chr5 73248707 73248888 -79288371 + GA-rich Low_complexity Low_complexity 1 180 0 4 1143 268 220 88 20 chr5 73249316 73249418 -79287841 + Charlie5 DNA MER1_type 108 216 -2408 4 1143 287 214 28 46 chr5 73249480 73249588 -79287671 + Charlie5 DNA MER1_type 2443 2548 -76 4 1143 227 351 0 0 chr5 73249618 73249695 -79287564 - ID4 SINE ID -6 77 1 4 1143 264 348 14 48 chr5 73249988 73250133 -79287126 + MIRb SINE MIR 113 252 -16 4 1143 2103 134 56 26 chr5 73250181 73250572 -79286687 - MTC LTR MaLR -18 403 1 4 1143 480 288 68 38 chr5 73250797 73251032 -79286227 + ORR1E LTR MaLR 12 253 -106 4 1143 328 204 57 34 chr5 73251171 73251284 -79285975 + ORR1E LTR MaLR 227 359 -20 4 1143 594 221 24 177 chr5 73251542 73251751 -79285508 + B3A SINE B2 19 197 -1 4 1143 270 0 0 0 chr5 73252562 73252592 -79284667 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1143 324 0 0 0 chr5 73252592 73252627 -79284632 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1143 686 169 0 25 chr5 73252647 73252768 -79284491 - B1_Mur2 SINE Alu -25 124 7 4 1143 767 188 0 14 chr5 73254041 73254187 -79283072 + B1_Mur3 SINE Alu 6 149 0 4 1143 217 200 22 0 chr5 73254188 73254233 -79283026 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 4 1143 297 0 0 0 chr5 73254387 73254420 -79282839 + (TAA)n Simple_repeat Simple_repeat 3 35 0 4 1143 186 103 0 0 chr5 73256138 73256167 -79281092 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1143 324 0 0 0 chr5 73256187 73256223 -79281036 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1143 426 303 35 7 chr5 73256259 73256402 -79280857 + B1F1 SINE Alu 1 147 -2 4 1143 349 313 239 42 chr5 73256523 73256977 -79280282 + HAL1 LINE L1 1192 1728 -779 4 1143 207 0 0 0 chr5 73256977 73257000 -79280259 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1143 349 313 239 42 chr5 73257000 73257241 -79280018 + HAL1 LINE L1 1729 2007 -500 4 1143 324 0 0 0 chr5 73257241 73257277 -79279982 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1143 349 313 239 42 chr5 73257277 73257311 -79279948 + HAL1 LINE L1 2008 2065 -442 4 1143 200 167 0 0 chr5 73257465 73257495 -79279764 + (CTG)n Simple_repeat Simple_repeat 2 31 0 4 1143 223 229 0 0 chr5 73258150 73258198 -79279061 + G-rich Low_complexity Low_complexity 1 48 0 4 1143 410 182 0 0 chr5 73260285 73260351 -79276908 + ID4 SINE ID 3 68 -15 4 1143 471 263 18 0 chr5 73260431 73260545 -79276714 + B1_Mur1 SINE Alu 1 116 -33 4 1143 243 336 30 45 chr5 73260434 73260568 -79276691 + ID_B1 SINE B4 85 216 -8 4 1143 362 147 0 14 chr5 73260711 73260780 -79276479 + GA-rich Low_complexity Low_complexity 2 69 0 4 1143 528 227 133 0 chr5 73260788 73260938 -79276321 + B4A SINE B4 105 274 -18 4 1143 262 235 113 89 chr5 73261216 73261384 -79275875 - MIRc SINE MIR -65 203 32 4 1143 348 43 0 0 chr5 73261595 73261641 -79275618 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1143 197 65 32 0 chr5 73261695 73261726 -79275533 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 4 1143 411 136 0 0 chr5 73262156 73262222 -79275037 + B1_Mus2 SINE Alu 70 135 -12 4 1143 194 91 0 29 chr5 73262222 73262256 -79275003 + (TAA)n Simple_repeat Simple_repeat 2 34 0 4 1143 1070 215 9 5 chr5 73262444 73262654 -79274605 + B3 SINE B2 3 213 -3 4 1143 28 0 0 0 chr5 73262678 73262706 -79274553 + AT_rich Low_complexity Low_complexity 1 28 0 4 1143 408 284 18 0 chr5 73262774 73262883 -79274376 + PB1D10 SINE Alu 1 111 -6 4 1143 559 259 37 37 chr5 73262894 73263058 -79274201 + RSINE1 SINE B4 2 165 0 4 1143 305 47 23 0 chr5 73263122 73263165 -79274094 + (TAA)n Simple_repeat Simple_repeat 2 45 0 4 1143 529 295 60 89 chr5 73263446 73263796 -79273463 + L1MDa LINE L1 905 1244 -5389 4 1143 709 100 8 16 chr5 73264062 73264184 -79273075 + (GGAA)n Simple_repeat Simple_repeat 2 122 0 4 1143 896 273 108 48 chr5 73264209 73264629 -79272630 + L1MDa LINE L1 1509 1955 -4678 4 1143 901 138 14 0 chr5 73264629 73264774 -79272485 + B1_Mus1 SINE Alu 2 148 0 4 1143 896 273 108 48 chr5 73264774 73264911 -79272348 + L1MDa LINE L1 1956 2099 -4534 4 1143 502 189 15 62 chr5 73264915 73265045 -79272214 + RMER20B LTR ERVK 1 124 -503 4 1143 475 152 162 0 chr5 73265596 73265695 -79271564 + B3 SINE B2 9 123 -93 4 1143 225 313 15 0 chr5 73265697 73265764 -79271495 + L1MDa LINE L1 3062 3129 -3408 4 1143 559 252 28 56 chr5 73265988 73266131 -79271128 + B1_Mur1 SINE Alu 1 139 -10 4 1143 468 0 0 0 chr5 73266132 73266184 -79271075 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 4 1143 477 253 137 25 chr5 73266188 73266472 -79270787 + L1MDa LINE L1 3224 3539 -2998 4 1143 423 144 89 9 chr5 73266520 73266632 -79270627 - Lx9 LINE L1 0 7644 7524 4 1143 462 61 0 0 chr5 73266655 73266721 -79270538 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1143 609 14 0 0 chr5 73267173 73267243 -79270016 + (TCTCC)n Simple_repeat Simple_repeat 4 73 0 4 1143 1019 142 6 0 chr5 73268342 73268518 -79268741 + (GGAGAA)n Simple_repeat Simple_repeat 1 177 0 4 1143 725 185 85 12 chr5 73268715 73268879 -79268380 - RMER5 LTR ERV1 -8 526 351 4 1144 442 253 36 61 chr5 73269359 73269752 -79267507 - RMER17C LTR ERVK -70 340 1 4 1144 1693 165 38 6 chr5 73269754 73270096 -79267163 - RMER5 LTR ERV1 -181 353 1 4 1144 628 89 10 10 chr5 73270208 73270310 -79266949 + (GA)n Simple_repeat Simple_repeat 1 102 0 4 1144 507 33 0 0 chr5 73270312 73270373 -79266886 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 4 1144 1039 181 23 41 chr5 73270419 73270638 -79266621 - B3 SINE B2 -1 215 1 4 1144 571 24 13 9 chr5 73270714 73270811 -79266448 + B1_Mus2 SINE Alu 57 150 0 4 1144 312 137 0 0 chr5 73270813 73270864 -79266395 + (GAA)n Simple_repeat Simple_repeat 2 52 0 4 1144 659 269 28 6 chr5 73271963 73272139 -79265120 - B3 SINE B2 -1 215 36 4 1144 243 146 0 0 chr5 73272143 73272184 -79265075 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 1144 337 30 75 0 chr5 73272937 73273004 -79264255 + (TTG)n Simple_repeat Simple_repeat 2 73 0 4 1144 236 0 21 64 chr5 73274042 73274089 -79263170 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 4 1144 752 243 64 11 chr5 73274105 73274292 -79262967 + B3A SINE B2 1 197 -1 4 1144 228 224 10 30 chr5 73274295 73274396 -79262863 + (TAA)n Simple_repeat Simple_repeat 3 101 0 4 1144 737 192 0 0 chr5 73274445 73274575 -79262684 + B3 SINE B2 1 130 -86 4 1144 279 0 0 0 chr5 73274602 73274633 -79262626 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 4 1144 1145 44 7 0 chr5 73274747 73274884 -79262375 + B1_Mus1 SINE Alu 1 138 -10 4 1144 855 55 0 0 chr5 73274884 73274993 -79262266 + (GAGAA)n Simple_repeat Simple_repeat 2 110 0 4 1144 942 34 0 0 chr5 73275364 73275482 -79261777 + (TTC)n Simple_repeat Simple_repeat 3 120 0 4 1144 1220 61 0 0 chr5 73275829 73275976 -79261283 - B1_Mus1 SINE Alu 0 148 2 4 1144 891 254 25 0 chr5 73276117 73276318 -79260941 + B3 SINE B2 1 206 -10 4 1144 1517 95 21 56 chr5 73276883 73277117 -79260142 - URR1A DNA MER1_type 0 226 1 4 1144 365 70 18 0 chr5 73277484 73277541 -79259718 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1144 1517 28 50 0 chr5 73277606 73277785 -79259474 - B2_Mm1t SINE B2 -4 189 2 4 1144 539 244 15 15 chr5 73278097 73278234 -79259025 - RSINE1 SINE B4 -15 150 14 4 1144 423 0 0 0 chr5 73278575 73278622 -79258637 + (TTA)n Simple_repeat Simple_repeat 1 47 0 5 1144 1335 264 30 75 chr5 73279265 73279855 -79257404 - RLTR20A2 LTR ERVK -1 567 8 5 1144 354 45 0 0 chr5 73280649 73280693 -79256566 + (TTG)n Simple_repeat Simple_repeat 1 44 0 5 1144 263 216 30 3 chr5 73280888 73280962 -79256297 + ID4_ SINE ID 7 80 -72 5 1144 228 169 0 0 chr5 73281078 73281128 -79256131 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1144 990 107 0 0 chr5 73281128 73281305 -79255954 + (TC)n Simple_repeat Simple_repeat 2 178 0 5 1144 228 169 0 0 chr5 73281305 73281319 -79255940 + (TG)n Simple_repeat Simple_repeat 1 14 0 5 1144 495 210 0 10 chr5 73281319 73281420 -79255839 - PB1D9 SINE Alu -20 100 1 5 1144 285 310 0 22 chr5 73281347 73281436 -79255823 - B4 SINE B4 -136 156 70 5 1144 351 227 186 0 chr5 73281442 73281539 -79255720 - B3 SINE B2 0 216 102 5 1144 535 178 88 44 chr5 73281516 73281546 -79255713 + ID_B1 SINE B4 50 215 -9 5 1144 989 31 0 8 chr5 73281546 73281675 -79255584 + B1_Mus1 SINE Alu 12 139 -9 5 1144 213 65 0 0 chr5 73281675 73281706 -79255553 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1144 801 0 0 0 chr5 73281711 73281800 -79255459 + (GAA)n Simple_repeat Simple_repeat 2 90 0 5 1144 551 217 19 0 chr5 73281800 73281906 -79255353 - B3 SINE B2 -108 108 1 5 1144 1419 176 68 89 chr5 73281930 73282059 -79255200 + RLTR30 LTR ERV1 11 144 -235 5 1144 1139 162 108 0 chr5 73282059 73282263 -79254996 + URR1A DNA MER1_type 1 226 0 5 1144 1419 176 68 89 chr5 73282263 73282502 -79254757 + RLTR30 LTR ERV1 145 371 -8 5 1144 260 178 55 2 chr5 73282598 73282666 -79254593 + B1F SINE Alu 1 74 -75 5 1144 3331 48 23 35 chr5 73283180 73283613 -79253646 + L1Md_F2 LINE L1 6155 6582 0 5 1144 252 0 0 0 chr5 73283885 73283913 -79253346 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 5 1144 614 297 140 25 chr5 73284017 73284626 -79252633 - L1MC4 LINE L1 -880 7162 6443 5 1144 548 170 224 0 chr5 73285327 73285492 -79251767 + B3 SINE B2 6 207 -9 5 1144 295 297 35 26 chr5 73285585 73285699 -79251560 - PB1D10 SINE Alu -2 115 1 5 1144 1915 98 3 0 chr5 73285944 73286229 -79251030 + ORR1A2 LTR MaLR 1 286 -41 5 1144 842 45 0 0 chr5 73286229 73286340 -79250919 + B1_Mm SINE Alu 1 111 -36 5 1144 207 0 0 0 chr5 73286348 73286371 -79250888 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1144 330 89 0 0 chr5 73286371 73286416 -79250843 + ORR1A2 LTR MaLR 274 318 -8 5 1144 443 18 18 0 chr5 73287250 73287306 -79249953 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1144 300 227 160 48 chr5 73287416 73287541 -79249718 + B1F SINE Alu 3 141 -8 5 1144 383 184 11 0 chr5 73287548 73287635 -79249624 + (CA)n Simple_repeat Simple_repeat 2 89 0 5 1144 265 378 20 94 chr5 73287780 73287929 -79249330 + MLT1I LTR MaLR 98 235 -176 5 1144 766 206 118 0 chr5 73288714 73288884 -79248375 - B3 SINE B2 -26 190 1 5 1144 286 251 96 0 chr5 73288942 73289015 -79248244 - PB1D7 SINE Alu -13 107 36 5 1144 532 249 98 55 chr5 73289038 73289221 -79248038 - B3A SINE B2 -3 195 5 5 1144 916 184 5 53 chr5 73289750 73289939 -79247320 + B3A SINE B2 4 183 -15 5 1144 204 288 15 0 chr5 73289939 73290005 -79247254 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1144 1736 42 0 0 chr5 73290236 73290480 -79246779 + L1Md_A LINE L1 6368 6582 0 5 1144 223 26 24 49 chr5 73290902 73290943 -79246316 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 5 1144 1831 181 37 13 chr5 73290943 73291323 -79245936 - MTD LTR MaLR -30 389 1 5 1144 222 206 0 0 chr5 73291339 73291402 -79245857 + CT-rich Low_complexity Low_complexity 2 64 0 5 1144 607 302 77 0 chr5 73291405 73291574 -79245685 - B3 SINE B2 -34 182 1 5 1144 282 296 25 34 chr5 73291910 73292029 -79245230 - ORR1E LTR MaLR -23 356 239 5 1144 666 230 31 6 chr5 73292065 73292227 -79245032 - ORR1E LTR MaLR -192 167 2 5 1144 236 304 25 42 chr5 73292591 73292711 -79244548 + L1M5 LINE L1 5564 5681 -559 5 1144 372 43 0 0 chr5 73292768 73292814 -79244445 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1144 368 161 12 58 chr5 73292934 73293020 -79244239 - HAL1-3A_ME LINE L1 -801 2057 1976 5 1144 259 223 0 18 chr5 73293020 73293134 -79244125 + (TG)n Simple_repeat Simple_repeat 2 113 0 5 1144 405 346 13 0 chr5 73293161 73293317 -79243942 - RSINE1 SINE B4 -5 160 3 5 1144 477 0 0 0 chr5 73293362 73293415 -79243844 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1144 420 315 27 34 chr5 73293562 73293710 -79243549 + B1_Mur1 SINE Alu 2 148 -1 5 1144 500 221 67 87 chr5 73293979 73294128 -79243131 - B1_Mur2 SINE Alu -1 148 3 5 1144 181 130 18 18 chr5 73294860 73294876 -79242383 + T-rich Low_complexity Low_complexity 43 58 0 5 1144 1442 64 11 0 chr5 73294876 73295063 -79242196 - B2_Mm1t SINE B2 -3 190 2 5 1144 181 130 18 18 chr5 73295063 73295101 -79242158 + T-rich Low_complexity Low_complexity 5 42 0 5 1144 891 253 166 11 chr5 73295495 73295779 -79241480 + MTE2b LTR MaLR 1 328 -51 5 1144 253 252 92 13 chr5 73295821 73295974 -79241285 + MER5C DNA MER1_type 149 313 0 5 1144 243 0 0 0 chr5 73296678 73296705 -79240554 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1144 763 142 7 7 chr5 73296705 73296840 -79240419 - B1_Mus2 SINE Alu 0 147 13 5 1144 553 194 60 0 chr5 73297176 73297310 -79239949 - B1_Mm SINE Alu -5 142 1 5 1144 615 191 46 31 chr5 73297636 73297766 -79239493 - B1_Mur1 SINE Alu -6 143 12 5 1144 1545 57 10 0 chr5 73298228 73298420 -79238839 + B2_Mm2 SINE B2 1 194 -1 5 1144 386 199 149 0 chr5 73300310 73300420 -79236839 + B1_Mus2 SINE Alu 6 129 -20 5 1144 833 204 0 0 chr5 73300438 73300585 -79236674 + B1_Mur1 SINE Alu 3 149 0 5 1144 1425 83 10 5 chr5 73300891 73301085 -79236174 - B2_Mm2 SINE B2 0 195 1 5 1144 383 125 40 27 chr5 73301098 73301172 -79236087 - PB1D9 SINE Alu -6 114 40 5 1144 662 291 19 10 chr5 73301556 73301761 -79235498 + ID_B1 SINE B4 5 211 -13 5 1144 340 330 133 48 chr5 73302111 73302923 -79234336 - L2a LINE L2 -20 3406 2516 5 1144 760 178 14 14 chr5 73303000 73303148 -79234111 - B1_Mur2 SINE Alu 0 149 2 5 1144 301 286 13 0 chr5 73303181 73303258 -79234001 + ID_B1 SINE B4 124 201 -23 5 1144 615 167 70 23 chr5 73304649 73304778 -79232481 + B1_Mur3 SINE Alu 15 149 0 5 1144 290 217 0 15 chr5 73304961 73305037 -79232222 + MIRb SINE MIR 188 262 0 5 1144 200 290 0 58 chr5 73305376 73305515 -79231744 + (CCCCG)n Simple_repeat Simple_repeat 5 135 0 5 1144 313 302 119 28 chr5 73307258 73307435 -79229824 + MIRb SINE MIR 54 246 -22 5 1144 356 293 80 16 chr5 73308770 73308895 -79228364 - MER112 DNA MER1_type -124 137 5 5 1144 554 221 139 0 chr5 73309353 73309475 -79227784 - B1_Mur2 SINE Alu -10 139 1 5 1144 652 148 92 9 chr5 73309614 73309723 -79227536 + PB1D9 SINE Alu 2 119 -1 5 1144 210 171 0 0 chr5 73309724 73309759 -79227500 + A-rich Low_complexity Low_complexity 1 35 0 5 1144 490 205 156 0 chr5 73309784 73309906 -79227353 - B1F SINE Alu -8 141 1 5 1144 502 128 70 0 chr5 73310267 73310353 -79226906 - B3 SINE B2 -105 111 20 5 1144 188 350 157 0 chr5 73310434 73310574 -79226685 - L3 LINE CR1 -984 3505 3344 5 1144 403 312 20 34 chr5 73311195 73311344 -79225915 - RSINE1 SINE B4 -15 150 4 5 1144 1686 289 60 30 chr5 73311355 73312034 -79225225 - L1MB7 LINE L1 -54 6130 5431 5 1144 1540 52 0 35 chr5 73312034 73312234 -79225025 - B2_Mm1t SINE B2 0 193 1 5 1144 1686 289 60 30 chr5 73312234 73312340 -79224919 - L1MB7 LINE L1 -754 5430 5323 5 1144 279 284 25 0 chr5 73312340 73312421 -79224838 - ID4_ SINE ID 0 83 1 5 1144 296 257 19 9 chr5 73312622 73312728 -79224531 - L1M5 LINE L1 -463 5777 5671 5 1144 869 172 21 0 chr5 73312831 73312976 -79224283 - B1_Mur3 SINE Alu -1 148 1 5 1144 199 237 0 38 chr5 73312992 73313071 -79224188 + CT-rich Low_complexity Low_complexity 4 79 0 5 1144 522 221 0 9 chr5 73313082 73313187 -79224072 - B1_Mur1 SINE Alu -36 113 10 5 1144 216 97 0 0 chr5 73313197 73313228 -79224031 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1144 1139 89 0 0 chr5 73313229 73313375 -79223884 - B1_Mus1 SINE Alu -1 147 2 5 1144 28 29 0 0 chr5 73313381 73313416 -79223843 + AT_rich Low_complexity Low_complexity 1 35 0 5 1144 3137 248 131 1 chr5 73313540 73314361 -79222898 - Lx9 LINE L1 -289 7355 6437 5 1144 183 42 0 0 chr5 73314361 73314385 -79222874 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1144 3137 264 63 23 chr5 73314385 73315067 -79222192 - Lx9 LINE L1 -1208 6436 5523 5 1144 588 292 85 43 chr5 73315207 73315418 -79221841 - B4 SINE B4 -49 243 24 5 1144 243 0 0 0 chr5 73315447 73315474 -79221785 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1144 245 250 103 103 chr5 73315474 73315581 -79221678 - B1F SINE Alu -10 107 1 5 1144 714 278 187 39 chr5 73315590 73316028 -79221231 - L1MB2 LINE L1 -55 6125 5623 5 1144 326 240 58 39 chr5 73316113 73316217 -79221042 - B4A SINE B4 -8 284 179 5 1144 23 0 0 0 chr5 73316794 73316817 -79220442 + AT_rich Low_complexity Low_complexity 1 23 0 5 1144 348 161 0 0 chr5 73316863 73316925 -79220334 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 5 1144 299 306 72 0 chr5 73317502 73317613 -79219646 - L1MB4 LINE L1 -137 6046 5928 5 1144 331 263 119 0 chr5 73317624 73317742 -79219517 + ORR1E LTR MaLR 9 140 -219 5 1144 303 245 47 9 chr5 73317902 73318009 -79219250 - L1MB4 LINE L1 -255 5925 5815 5 1144 198 0 0 0 chr5 73318230 73318252 -79219007 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1144 552 175 9 19 chr5 73318252 73318350 -79218909 - B1_Mus1 SINE Alu -10 138 40 6 1144 663 40 10 19 chr5 73319009 73319112 -79218147 + L1Md_F3 LINE L1 6482 6583 -1 6 1144 322 161 14 0 chr5 73319143 73319208 -79218051 - B2_Mm2 SINE B2 -82 116 46 6 1144 1274 96 23 0 chr5 73319252 73319429 -79217830 - B2_Mm1t SINE B2 -12 181 1 6 1144 228 250 16 0 chr5 73320025 73320089 -79217170 + B3A SINE B2 2 66 -132 6 1144 389 194 78 104 chr5 73320200 73320315 -79216944 + PB1D9 SINE Alu 5 116 -4 6 1144 671 216 123 11 chr5 73320933 73321120 -79216139 + B3 SINE B2 2 209 -7 6 1144 899 121 8 0 chr5 73321142 73321274 -79215985 + B1_Mus2 SINE Alu 1 133 -14 6 1144 203 344 49 0 chr5 73322015 73322137 -79215122 + MIR SINE MIR 61 188 -74 6 1144 617 268 21 0 chr5 73322185 73322327 -79214932 - RSINE1 SINE B4 -17 148 4 6 1144 735 261 50 35 chr5 73322563 73322845 -79214414 - B4A SINE B4 -4 288 3 6 1144 693 279 110 8 chr5 73323455 73323701 -79213558 + B4 SINE B4 4 274 -18 6 1144 376 329 0 0 chr5 73324062 73324229 -79213030 + CT-rich Low_complexity Low_complexity 2 168 0 6 1144 1045 258 217 52 chr5 73324794 73325346 -79211913 + Lx6 LINE L1 6818 7460 0 6 1144 17543 14 1 0 chr5 73325393 73327369 -79209890 + L1Md_T LINE L1 3609 5586 -297 6 1144 8574 29 4 0 chr5 73327369 73328361 -79208898 + L1Md_T LINE L1 5587 6582 0 6 1144 730 225 0 21 chr5 73328726 73328871 -79208388 + B1_Mur1 SINE Alu 1 142 -7 6 1144 3516 31 14 0 chr5 73329395 73329808 -79207451 - L1Md_F3 LINE L1 0 6584 6166 6 1144 24 32 0 0 chr5 73330043 73330074 -79207185 + AT_rich Low_complexity Low_complexity 1 31 0 6 1144 557 217 167 31 chr5 73330515 73330677 -79206582 + B3 SINE B2 2 185 -31 6 1144 1688 114 46 123 chr5 73330677 73330922 -79206337 + ORR1A3 LTR MaLR 1 233 -93 6 1144 183 42 0 0 chr5 73330922 73330946 -79206313 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1144 1069 73 7 0 chr5 73330946 73331083 -79206176 - B1_Mus1 SINE Alu -10 138 1 6 1144 1688 114 46 123 chr5 73331083 73331185 -79206074 + ORR1A3 LTR MaLR 234 321 -5 6 1144 531 182 100 57 chr5 73331229 73331369 -79205890 + B1_Mur1 SINE Alu 1 146 -3 6 1144 210 297 29 19 chr5 73333428 73333531 -79203728 + (TATG)n Simple_repeat Simple_repeat 1 104 0 6 1144 374 279 67 24 chr5 73333559 73333724 -79203535 - MTD LTR MaLR -3 416 245 6 1144 805 176 8 0 chr5 73334015 73334140 -79203119 - ETnERV2-int LTR ERVK -211 7195 7070 6 1144 597 174 248 0 chr5 73334144 73334293 -79202966 - MTD LTR MaLR -67 352 167 6 1144 321 250 139 10 chr5 73334302 73334403 -79202856 + B4A SINE B4 127 240 -52 6 1144 2860 89 32 15 chr5 73334518 73334918 -79202341 + MTB_Mm LTR MaLR 1 407 0 6 1144 1079 39 0 0 chr5 73334953 73335081 -79202178 + B1_Mm SINE Alu 1 128 -19 6 1144 1053 220 15 5 chr5 73335827 73336028 -79201231 + B3 SINE B2 1 203 -13 6 1144 636 38 0 0 chr5 73336215 73336294 -79200965 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1144 3278 33 0 22 chr5 73336294 73336696 -79200563 - MTA_Mm LTR MaLR -3 393 1 6 1144 489 257 18 0 chr5 73336705 73336818 -79200441 - PB1D9 SINE Alu -5 115 1 6 1144 359 317 57 24 chr5 73336895 73337105 -79200154 - B4 SINE B4 -72 220 4 6 1144 1407 180 115 67 chr5 73337523 73337880 -79199379 - ORR1D1 LTR MaLR 0 374 1 6 1144 261 0 0 0 chr5 73338552 73338581 -79198678 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1144 3017 0 0 0 chr5 73338663 73339017 -79198242 - L1Md_T LINE L1 0 6582 6254 6 1144 586 164 0 98 chr5 73339116 73339238 -79198021 - B1_Mur1 SINE Alu -11 138 29 6 1144 572 281 94 25 chr5 73339520 73339721 -79197538 - Lx8 LINE L1 -490 6983 6769 6 1144 574 229 44 83 chr5 73340514 73340719 -79196540 - B4A SINE B4 0 292 96 6 1144 321 260 190 136 chr5 73340724 73341098 -79196161 - Lx9 LINE L1 -1094 6550 6157 6 1144 2073 252 72 27 chr5 73341280 73341994 -79195265 - Lx8 LINE L1 -1615 5858 5082 6 1144 571 140 30 0 chr5 73342002 73342102 -79195157 - B1_Mur4 SINE Alu 0 150 48 6 1144 697 215 88 44 chr5 73342102 73342306 -79194953 - Lx8 LINE L1 -1106 4741 4529 6 1144 1063 124 0 27 chr5 73342315 73342337 -79194922 - B2_Mm2 SINE B2 -17 178 159 6 1144 387 0 0 0 chr5 73342337 73342380 -79194879 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 6 1144 1296 19 0 0 chr5 73342380 73342540 -79194719 - B2_Mm1a SINE B2 -33 160 1 6 1144 3445 241 91 81 chr5 73342544 73343779 -79193480 - Lx8 LINE L1 -1330 4517 3314 6 1144 1046 95 0 39 chr5 73343779 73343932 -79193327 - B1_Mus1 SINE Alu 0 148 2 6 1144 3445 241 91 81 chr5 73343932 73344018 -79193241 - Lx8 LINE L1 -2534 3313 3238 6 1144 411 21 0 0 chr5 73344018 73344066 -79193193 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1144 3445 241 91 81 chr5 73344066 73344389 -79192870 - Lx8 LINE L1 -2610 3237 2856 6 1144 1299 221 125 20 chr5 73344403 73344873 -79192386 - Lx8 LINE L1 -4203 1644 1128 6 1144 1087 94 112 0 chr5 73344873 73345043 -79192216 + B2_Mm2 SINE B2 2 190 -5 6 1144 904 251 105 44 chr5 73345043 73345249 -79192010 - Lx8 LINE L1 -6481 1127 900 6 1144 640 202 23 0 chr5 73345632 73345761 -79191498 + B1F SINE Alu 18 149 0 6 1144 922 133 48 12 chr5 73346152 73346319 -79190940 + URR1B DNA MER1_type 53 225 0 6 1144 234 0 0 0 chr5 73348248 73348274 -79188985 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 6 1144 35 0 0 0 chr5 73349339 73349374 -79187885 + AT_rich Low_complexity Low_complexity 1 35 0 6 1144 341 296 0 0 chr5 73349622 73349710 -79187549 + RSINE1 SINE B4 8 95 -70 6 1144 31 58 0 0 chr5 73349781 73349833 -79187426 + AT_rich Low_complexity Low_complexity 1 52 0 6 1144 723 206 7 0 chr5 73349949 73350095 -79187164 - B1_Mur2 SINE Alu -2 147 1 6 1144 446 263 11 0 chr5 73350871 73350966 -79186293 + B1_Mur2 SINE Alu 3 98 -51 6 1144 1096 92 80 64 chr5 73351415 73351602 -79185657 + B2_Mm2 SINE B2 2 191 -4 6 1144 695 240 106 0 chr5 73351746 73351925 -79185334 + B3 SINE B2 2 199 -17 6 1144 438 20 0 0 chr5 73351977 73352028 -79185231 + (TA)n Simple_repeat Simple_repeat 1 51 0 6 1144 338 62 0 0 chr5 73353070 73353118 -79184141 + L1Md_F2 LINE L1 6523 6570 -12 6 1144 628 108 225 0 chr5 73353316 73353436 -79183823 - B1_Mus1 SINE Alu -1 147 1 6 1144 21 0 0 0 chr5 73353659 73353680 -79183579 + AT_rich Low_complexity Low_complexity 1 21 0 6 1144 370 292 0 58 chr5 73355161 73355281 -79181978 + RSINE1 SINE B4 44 156 -9 6 1144 337 337 91 4 chr5 73355374 73355648 -79181611 + L2a LINE L2 3001 3298 -128 6 1144 291 54 0 0 chr5 73355721 73355758 -79181501 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 6 1144 339 25 0 0 chr5 73356388 73356428 -79180831 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1144 546 139 194 0 chr5 73357909 73358017 -79179242 - B1_Mur4 SINE Alu 0 150 22 6 1144 639 176 164 35 chr5 73358052 73358223 -79179036 - B2_Mm2 SINE B2 -1 194 2 6 1144 243 244 58 58 chr5 73358495 73358634 -79178625 + HAL1 LINE L1 2063 2201 -306 6 1144 529 242 48 106 chr5 73358722 73358930 -79178329 + B3A SINE B2 3 198 0 6 1144 449 247 72 96 chr5 73359041 73359360 -79177899 + L1MA5 LINE L1 5692 5985 -327 6 1144 434 212 61 0 chr5 73359775 73359874 -79177385 + PB1D10 SINE Alu 1 105 -12 6 1144 229 68 45 0 chr5 73360218 73360262 -79176997 + (TTTTTG)n Simple_repeat Simple_repeat 1 46 0 6 1144 620 289 37 16 chr5 73360326 73360516 -79176743 - B3A SINE B2 -4 194 1 6 1144 917 204 63 0 chr5 73360621 73360812 -79176447 - B3 SINE B2 -12 204 2 6 1144 900 266 15 0 chr5 73360828 73361027 -79176232 - B3 SINE B2 -5 211 10 6 1144 359 260 51 20 chr5 73361091 73361189 -79176070 + Lx6 LINE L1 7044 7144 -316 6 1144 4666 183 62 28 chr5 73361217 73362135 -79175124 - Lx5 LINE L1 0 7050 6095 6 1144 369 0 0 0 chr5 73362135 73362176 -79175083 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1144 4666 183 62 28 chr5 73362176 73362233 -79175026 - Lx5 LINE L1 -956 6094 6042 6 1144 607 202 114 103 chr5 73362227 73362417 -79174842 + Lx7 LINE L1 7397 7565 -131 6 1144 399 151 244 0 chr5 73362417 73362503 -79174756 - U6 snRNA snRNA 0 107 1 6 1144 607 202 114 103 chr5 73362503 73362593 -79174666 + Lx7 LINE L1 7566 7680 -16 6 1144 368 246 58 17 chr5 73362746 73362866 -79174393 - RSINE1 SINE B4 0 165 41 6 1144 327 316 32 19 chr5 73363294 73363449 -79173810 - L1MEc LINE L1 -5544 856 700 6 1144 309 290 28 65 chr5 73364373 73364480 -79172779 - MTEa LTR MaLR -226 153 51 6 1144 288 274 114 9 chr5 73365040 73365154 -79172105 - RSINE1 SINE B4 -30 135 10 6 1144 334 321 76 8 chr5 73365391 73365523 -79171736 - RSINE1 SINE B4 -23 142 2 6 1144 191 276 143 0 chr5 73366793 73366891 -79170368 - MIRb SINE MIR -150 118 7 6 1144 21 36 0 0 chr5 73369180 73369208 -79168051 + AT_rich Low_complexity Low_complexity 1 28 0 6 1144 22 35 0 0 chr5 73369799 73369828 -79167431 + AT_rich Low_complexity Low_complexity 1 29 0 6 1144 958 103 170 0 chr5 73370420 73370585 -79166674 - B2_Mm2 SINE B2 -2 193 1 6 1144 373 248 123 7 chr5 73371144 73371290 -79165969 + L1MA6 LINE L1 6015 6177 -123 6 1144 35 24 0 0 chr5 73371396 73371438 -79165821 + AT_rich Low_complexity Low_complexity 1 42 0 6 1144 189 0 0 0 chr5 73371830 73371851 -79165408 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 6 1144 829 231 108 5 chr5 73371858 73372071 -79165188 - B4A SINE B4 -56 236 2 6 1144 568 176 143 0 chr5 73373449 73373568 -79163691 - B1_Mur1 SINE Alu -8 141 6 6 1144 244 208 0 0 chr5 73373837 73373885 -79163374 + L1MEf LINE L1 665 712 -5530 6 1144 260 295 99 13 chr5 73373980 73374131 -79163128 + L1MEf LINE L1 2710 2873 -3273 6 1144 650 13 13 0 chr5 73374598 73374677 -79162582 + (TG)n Simple_repeat Simple_repeat 1 80 0 6 1144 288 0 0 0 chr5 73374677 73374708 -79162551 + (GA)n Simple_repeat Simple_repeat 1 32 0 6 1144 28 0 0 0 chr5 73375262 73375290 -79161969 + AT_rich Low_complexity Low_complexity 1 28 0 6 1144 678 236 28 0 chr5 73375290 73375434 -79161825 - B1_Mur2 SINE Alu 0 149 2 7 1144 555 172 99 118 chr5 73375754 73375906 -79161353 + B1_Mur4 SINE Alu 1 149 -1 7 1144 634 160 132 1 chr5 73375935 73376085 -79161174 + B3 SINE B2 5 172 -26 7 1144 290 237 0 0 chr5 73376084 73376143 -79161116 - B1_Mus2 SINE Alu -87 60 2 7 1144 213 263 16 66 chr5 73376287 73376348 -79160911 - ID2 SINE ID -14 69 12 7 1144 305 365 125 26 chr5 73376827 73377139 -79160120 + MLT1I LTR MaLR 63 405 -6 7 1144 259 251 3 0 chr5 73377191 73377267 -79159992 - MIR SINE MIR -55 153 76 7 1144 449 245 0 0 chr5 73377276 73377382 -79159877 - RSINE1 SINE B4 -31 134 29 7 1144 423 283 92 82 chr5 73377510 73377791 -79159468 + MLT2B4 LTR ERVL 36 319 -237 7 1144 538 118 0 0 chr5 73377782 73377867 -79159392 - B2_Mm2 SINE B2 -55 140 56 7 1144 217 36 0 0 chr5 73377868 73377896 -79159363 - B2_Mm1t SINE B2 -108 85 58 7 1144 217 36 0 0 chr5 73377898 73377926 -79159333 - B2_Mm1t SINE B2 -108 85 58 7 1144 275 160 142 115 chr5 73377913 73378026 -79159233 - B2_Mm2 SINE B2 -79 116 1 7 1144 1221 77 0 0 chr5 73379913 73380083 -79157176 + (CA)n Simple_repeat Simple_repeat 1 170 0 7 1144 275 214 0 23 chr5 73380086 73380172 -79157087 + (CATA)n Simple_repeat Simple_repeat 2 85 0 7 1144 237 186 28 28 chr5 73380196 73380268 -79156991 + A-rich Low_complexity Low_complexity 1 72 0 7 1144 295 121 0 33 chr5 73380644 73380682 -79156577 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 1144 1107 119 0 0 chr5 73380682 73380858 -79156401 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 7 1144 295 121 0 33 chr5 73380858 73380879 -79156380 + (TA)n Simple_repeat Simple_repeat 1 21 0 7 1144 880 204 73 24 chr5 73382714 73382920 -79154339 + B3 SINE B2 1 216 0 7 1144 1046 228 79 11 chr5 73382972 73383317 -79153942 - MTC LTR MaLR -8 413 18 7 1144 519 139 0 0 chr5 73383661 73383776 -79153483 + (GA)n Simple_repeat Simple_repeat 1 115 0 7 1144 322 276 18 12 chr5 73383802 73383918 -79153341 - B3A SINE B2 -75 120 1 7 1144 549 191 59 25 chr5 73384037 73384155 -79153104 - B1_Mur2 SINE Alu -27 122 1 7 1144 212 125 0 40 chr5 73384158 73384208 -79153051 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 7 1144 189 0 0 0 chr5 73384212 73384233 -79153026 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1144 1210 41 7 0 chr5 73384233 73384379 -79152880 - B1_Mm SINE Alu 0 147 1 7 1144 269 188 69 23 chr5 73384608 73384695 -79152564 - Charlie15a DNA MER1_type -19 205 115 7 1144 1165 95 7 13 chr5 73384711 73385011 -79152248 + (TG)n Simple_repeat Simple_repeat 1 297 0 7 1144 189 0 0 0 chr5 73385361 73385382 -79151877 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 7 1144 1025 114 17 22 chr5 73385386 73385566 -79151693 - Lx LINE L1 0 6654 6476 7 1144 214 294 0 0 chr5 73385955 73386006 -79151253 + L2c LINE L2 3293 3343 -44 7 1144 591 112 0 0 chr5 73387163 73387252 -79150007 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 7 1144 1007 135 0 0 chr5 73387255 73387403 -79149856 - B1_Mus1 SINE Alu 0 148 1 7 1144 550 183 26 0 chr5 73387452 73387567 -79149692 - B1_Mur4 SINE Alu -5 145 28 7 1144 579 111 174 9 chr5 73387840 73387949 -79149310 - B1_Mur2 SINE Alu -1 148 22 7 1144 252 404 7 7 chr5 73388018 73388170 -79149089 - MER63A DNA AcHobo -51 159 8 7 1144 229 277 60 12 chr5 73388215 73388280 -79148979 - MLT1A1 LTR MaLR 0 408 340 7 1144 1553 165 79 6 chr5 73388280 73388597 -79148662 + RMER4B LTR ERVK 1 340 -245 7 1144 698 129 7 28 chr5 73388597 73388740 -79148519 + GA-rich Low_complexity Low_complexity 1 140 0 7 1144 731 158 4 19 chr5 73388740 73388971 -79148288 + RMER4B LTR ERVK 318 585 0 7 1144 701 56 0 0 chr5 73389290 73389380 -79147879 + B1_Mm SINE Alu 48 137 -10 7 1144 238 0 53 26 chr5 73389380 73389418 -79147841 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1144 232 306 106 0 chr5 73389600 73389685 -79147574 - PB1D10 SINE Alu 0 117 24 7 1144 556 260 34 40 chr5 73389732 73389908 -79147351 - MTEb LTR MaLR 0 379 205 7 1144 466 302 36 36 chr5 73389911 73390107 -79147152 + B3A SINE B2 3 198 0 7 1144 2707 134 29 29 chr5 73390160 73390581 -79146678 - MTC LTR MaLR 0 421 1 7 1144 1572 103 107 25 chr5 73390638 73390996 -79146263 - ORR1A4 LTR MaLR -8 386 1 7 1144 232 184 0 20 chr5 73391020 73391070 -79146189 - MTEb LTR MaLR -270 109 61 7 1144 537 195 195 0 chr5 73391075 73391198 -79146061 + B1_Mus1 SINE Alu 2 148 0 7 1144 277 245 0 0 chr5 73391254 73391307 -79145952 - MTEb LTR MaLR -309 70 18 7 1144 331 304 55 12 chr5 73391409 73391520 -79145739 - L1MEd LINE L1 -5946 173 64 7 1144 351 0 0 0 chr5 73391520 73391559 -79145700 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 7 1144 331 304 55 12 chr5 73391559 73391610 -79145649 - L1MEd LINE L1 -6056 63 5 7 1144 750 229 33 33 chr5 73391735 73391916 -79145343 - B3 SINE B2 -35 181 1 7 1144 587 274 38 22 chr5 73392381 73392593 -79144666 + B3A SINE B2 12 215 -1 7 1144 440 292 94 0 chr5 73392603 73392709 -79144550 + B1_Mur2 SINE Alu 10 125 -24 7 1144 265 242 0 29 chr5 73392946 73393014 -79144245 + CT-rich Low_complexity Low_complexity 4 69 0 7 1144 692 232 22 0 chr5 73393023 73393161 -79144098 - B1_Mur1 SINE Alu -5 144 4 7 1144 189 213 0 0 chr5 73394194 73394241 -79143018 + CT-rich Low_complexity Low_complexity 3 49 0 7 1144 695 213 48 87 chr5 73394379 73394585 -79142674 + B3A SINE B2 1 198 0 7 1144 338 327 9 0 chr5 73394952 73395059 -79142200 - L1M5 LINE L1 -452 5672 5565 7 1144 249 279 141 28 chr5 73397236 73397413 -79139846 + L1MA5 LINE L1 6104 6300 0 7 1144 238 271 115 33 chr5 73397777 73397899 -79139360 + L1MA6 LINE L1 6131 6262 -38 7 1144 296 209 97 0 chr5 73399989 73400078 -79137181 + PB1D7 SINE Alu 2 110 -10 7 1144 688 189 35 7 chr5 73400164 73400308 -79136951 + B1F2 SINE Alu 1 148 -1 7 1145 702 180 0 0 chr5 73400690 73400812 -79136447 + B3 SINE B2 1 122 -94 7 1145 1296 79 0 0 chr5 73400812 73400990 -79136269 + (CA)n Simple_repeat Simple_repeat 2 179 0 7 1145 294 29 0 0 chr5 73400996 73401031 -79136228 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1145 397 79 0 0 chr5 73401551 73401614 -79135645 - L1Md_F2 LINE L1 0 6582 6520 7 1145 233 175 0 17 chr5 73401675 73401721 -79135538 + CT-rich Low_complexity Low_complexity 14 58 0 7 1145 1171 74 0 0 chr5 73401721 73401869 -79135390 - B1_Mus1 SINE Alu 0 148 1 7 1145 233 175 0 17 chr5 73401869 73401880 -79135379 + polypyrimidine Low_complexity Low_complexity 3 13 0 7 1145 226 122 0 75 chr5 73403818 73403871 -79133388 + T-rich Low_complexity Low_complexity 1 49 0 7 1145 707 202 57 42 chr5 73405638 73405850 -79131409 - B3 SINE B2 0 216 2 7 1145 1251 110 15 25 chr5 73408753 73408949 -79128310 - B2_Mm2 SINE B2 0 195 2 7 1145 619 244 65 65 chr5 73409767 73409982 -79127277 - B3 SINE B2 0 216 2 7 1145 1416 71 22 0 chr5 73410587 73410770 -79126489 - B2_Mm2 SINE B2 -6 189 3 7 1145 214 158 0 0 chr5 73412623 73412661 -79124598 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1145 22 0 0 0 chr5 73413044 73413066 -79124193 + AT_rich Low_complexity Low_complexity 1 22 0 7 1145 330 26 0 0 chr5 73414439 73414478 -79122781 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1145 236 253 10 21 chr5 73414871 73414968 -79122291 + Lx9 LINE L1 7422 7517 -127 7 1145 416 202 0 20 chr5 73414968 73415069 -79122190 + (CATATA)n Simple_repeat Simple_repeat 5 103 0 7 1145 297 0 0 0 chr5 73416049 73416082 -79121177 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1145 1434 75 16 5 chr5 73417528 73417715 -79119544 - B2_Mm2 SINE B2 -5 190 2 7 1145 235 257 255 9 chr5 73417754 73417860 -79119399 + MIRb SINE MIR 25 156 -112 7 1145 233 340 108 99 chr5 73421314 73421788 -79115471 - MLT1H2 LTR MaLR -6 483 6 7 1145 529 260 23 8 chr5 73421964 73422092 -79115167 + RSINE1 SINE B4 16 145 -20 7 1145 1190 41 0 20 chr5 73423108 73423257 -79114002 - B1_Mus2 SINE Alu -1 146 1 7 1145 189 74 0 0 chr5 73424399 73424426 -79112833 + (TCTG)n Simple_repeat Simple_repeat 3 29 0 7 1145 442 200 42 0 chr5 73424442 73424537 -79112722 - B1_Mur1 SINE Alu -13 136 38 7 1145 436 237 69 35 chr5 73424687 73424831 -79112428 - B1F1 SINE Alu 0 149 1 7 1145 638 231 76 60 chr5 73425162 73425346 -79111913 + 7SLRNA srpRNA srpRNA 3 189 -125 7 1145 1184 81 214 11 chr5 73426506 73426693 -79110566 + URR1A DNA MER1_type 1 225 -1 7 1145 716 197 30 0 chr5 73426831 73426963 -79110296 + B1_Mur2 SINE Alu 2 137 -12 7 1145 371 236 67 67 chr5 73427097 73427247 -79110012 + Lx9 LINE L1 7087 7236 -408 7 1145 549 0 0 0 chr5 73427499 73427560 -79109699 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1145 411 273 70 70 chr5 73427594 73427807 -79109452 - Lx9 LINE L1 -217 7427 7215 7 1145 29986 23 0 1 chr5 73428128 73432336 -79104923 - L1Md_T LINE L1 0 6582 2378 7 1145 206 98 0 47 chr5 73433261 73433304 -79103955 + (TTA)n Simple_repeat Simple_repeat 3 43 0 7 1145 183 129 0 0 chr5 73433837 73433868 -79103391 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1145 563 271 41 31 chr5 73435086 73435280 -79101979 - B3A SINE B2 -1 197 2 7 1145 780 257 90 106 chr5 73435337 73435715 -79101544 + ORR1D1 LTR MaLR 1 372 -2 7 1145 1132 122 50 0 chr5 73435834 73436015 -79101244 + B2_Mm2 SINE B2 1 190 -5 7 1145 429 185 48 0 chr5 73436357 73436453 -79100806 + B1F SINE Alu 14 113 -7 7 1145 262 287 157 0 chr5 73436638 73436753 -79100506 + L2a LINE L2 3272 3404 -22 8 1145 346 345 0 0 chr5 73436770 73436880 -79100379 + PB1D7 SINE Alu 5 114 -6 8 1145 204 125 0 0 chr5 73436885 73436917 -79100342 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 8 1145 225 0 0 0 chr5 73437638 73437663 -79099596 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 8 1145 423 0 0 0 chr5 73437705 73437752 -79099507 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 8 1145 389 296 79 64 chr5 73439238 73439440 -79097819 - ID_B1 SINE B4 -12 212 8 8 1145 198 0 0 0 chr5 73439476 73439498 -79097761 + (CAGG)n Simple_repeat Simple_repeat 3 24 0 8 1145 1018 121 211 0 chr5 73440762 73440928 -79096331 + B3 SINE B2 2 202 -14 8 1145 687 260 5 22 chr5 73440978 73441163 -79096096 - B3A SINE B2 -16 182 1 8 1145 378 61 0 0 chr5 73443034 73443083 -79094176 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 8 1145 903 122 0 39 chr5 73444478 73444632 -79092627 - URR1A DNA MER1_type -2 224 77 8 1145 318 196 176 0 chr5 73444864 73444966 -79092293 + PB1D7 SINE Alu 1 120 0 8 1145 23 33 0 0 chr5 73444987 73445017 -79092242 + AT_rich Low_complexity Low_complexity 1 30 0 8 1145 252 59 0 0 chr5 73445093 73445127 -79092132 + (T)n Simple_repeat Simple_repeat 1 34 0 8 1145 919 185 104 28 chr5 73446221 73446432 -79090827 + MTD LTR MaLR 193 419 0 8 1145 825 255 38 9 chr5 73447424 73447634 -79089625 - B3 SINE B2 0 216 1 8 1145 1066 200 9 14 chr5 73447819 73448032 -79089227 - B3 SINE B2 -4 212 1 8 1145 230 299 207 43 chr5 73448298 73448462 -79088797 - B3 SINE B2 -25 191 1 8 1145 21 57 0 0 chr5 73449301 73449336 -79087923 + AT_rich Low_complexity Low_complexity 1 35 0 8 1145 866 24 56 0 chr5 73449587 73449713 -79087546 + (TTTCC)n Simple_repeat Simple_repeat 4 136 0 8 1145 231 114 0 0 chr5 73449713 73449748 -79087511 + (TCCC)n Simple_repeat Simple_repeat 4 38 0 8 1145 283 240 120 0 chr5 73449749 73449824 -79087435 - B1F SINE Alu -44 105 22 8 1145 1649 172 88 88 chr5 73449945 73450366 -79086893 + MTC LTR MaLR 1 421 0 8 1145 22 0 0 0 chr5 73450428 73450450 -79086809 + AT_rich Low_complexity Low_complexity 1 22 0 8 1145 736 150 39 91 chr5 73451000 73451154 -79086105 + URR1B DNA MER1_type 78 223 -2 8 1145 759 228 0 0 chr5 73451742 73451922 -79085337 + (TA)n Simple_repeat Simple_repeat 1 180 0 8 1145 201 262 0 0 chr5 73451957 73452018 -79085241 + (TA)n Simple_repeat Simple_repeat 2 62 0 8 1145 316 145 400 24 chr5 73452530 73452615 -79084644 - PB1D10 SINE Alu 0 117 1 8 1145 667 175 62 16 chr5 73453643 73453771 -79083488 - RSINE1 SINE B4 -29 136 3 8 1145 622 204 83 0 chr5 73453788 73453920 -79083339 - B1F SINE Alu 0 149 7 8 1145 216 336 29 0 chr5 73454093 73454197 -79083062 - B1F1 SINE Alu -1 148 42 8 1145 336 277 113 25 chr5 73455073 73455232 -79082027 - B3A SINE B2 -22 176 4 8 1145 271 307 0 0 chr5 73456055 73456130 -79081129 + ID4_ SINE ID 3 77 -6 8 1145 1333 73 67 11 chr5 73456816 73456996 -79080263 + B2_Mm2 SINE B2 1 190 -5 8 1145 191 146 24 0 chr5 73457064 73457105 -79080154 + (TAGA)n Simple_repeat Simple_repeat 3 44 0 8 1145 474 18 0 0 chr5 73457952 73458007 -79079252 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1145 264 317 135 0 chr5 73458012 73458116 -79079143 - B3A SINE B2 -30 168 51 8 1145 744 260 15 15 chr5 73458171 73458370 -79078889 - ID_B1 SINE B4 -2 222 24 8 1145 225 242 29 29 chr5 73458310 73458378 -79078881 - ID4 SINE ID -2 81 14 8 1145 291 346 38 90 chr5 73458817 73459182 -79078077 + L2a LINE L2 2515 2860 -559 8 1145 229 294 43 100 chr5 73459256 73459396 -79077863 + L2a LINE L2 2998 3129 -297 8 1145 1012 173 147 0 chr5 73460657 73460854 -79076405 + URR1A DNA MER1_type 1 226 0 8 1145 458 240 47 23 chr5 73461660 73461788 -79075471 - B3 SINE B2 -1 215 85 8 1145 29 0 0 0 chr5 73461835 73461864 -79075395 + AT_rich Low_complexity Low_complexity 1 29 0 8 1145 1239 41 0 0 chr5 73462998 73463144 -79074115 - B1_Mm SINE Alu 0 147 2 8 1145 185 146 21 0 chr5 73463350 73463398 -79073861 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1145 200 35 35 0 chr5 73463615 73463644 -79073615 + (TAA)n Simple_repeat Simple_repeat 2 31 0 8 1145 235 335 59 74 chr5 73464237 73464440 -79072819 - MER2 DNA MER2_type -59 286 87 8 1145 210 136 0 0 chr5 73464630 73464674 -79072585 + (T)n Simple_repeat Simple_repeat 1 44 0 8 1145 451 151 14 0 chr5 73464674 73464747 -79072512 - PB1D9 SINE Alu 0 120 47 8 1145 1126 151 63 49 chr5 73464799 73465022 -79072237 - URR1A DNA MER1_type 0 226 1 8 1145 226 319 73 57 chr5 73465359 73465482 -79071777 + L2b LINE L2 3251 3375 0 8 1145 228 278 29 19 chr5 73465580 73465688 -79071571 - MIR SINE MIR -95 167 60 8 1145 413 269 52 9 chr5 73466454 73466570 -79070689 + MIR3 SINE MIR 82 202 -6 8 1145 1031 115 0 0 chr5 73466717 73466865 -79070394 - B1_Mus1 SINE Alu 0 148 1 8 1145 308 303 100 31 chr5 73467370 73467530 -79069729 - B4A SINE B4 -92 200 30 8 1145 1466 78 0 20 chr5 73468121 73468318 -79068941 - B2_Mm2 SINE B2 -1 194 2 8 1145 838 169 202 6 chr5 73468323 73468501 -79068758 - B3 SINE B2 0 216 4 8 1145 1628 187 14 89 chr5 73468542 73468889 -79068370 + ORR1B1 LTR MaLR 41 361 -33 8 1145 826 206 7 0 chr5 73468900 73469036 -79068223 + RSINE1 SINE B4 13 149 -16 8 1145 677 197 226 16 chr5 73471031 73471217 -79066042 + URR1B DNA MER1_type 1 225 0 8 1145 3570 20 2 0 chr5 73471542 73471937 -79065322 + MTA_Mm LTR MaLR 1 396 0 8 1145 617 244 22 103 chr5 73472430 73472654 -79064605 - B3 SINE B2 -10 206 1 8 1145 1157 75 0 0 chr5 73473141 73473287 -79063972 - B1_Mm SINE Alu 0 147 2 8 1145 930 244 5 14 chr5 73473290 73473506 -79063753 - B3 SINE B2 0 216 3 8 1145 272 228 177 96 chr5 73474730 73474840 -79062419 - B1F1 SINE Alu -1 116 2 8 1145 443 289 167 25 chr5 73474947 73475273 -79061986 + L1MB1 LINE L1 5567 5947 -224 8 1145 508 335 156 20 chr5 73476082 73476332 -79060927 + B4A SINE B4 9 292 0 8 1145 864 128 0 0 chr5 73476337 73476516 -79060743 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1145 516 279 53 70 chr5 73478915 73479216 -79058043 + RLTR15 LTR ERVK 1 296 -63 8 1145 530 282 96 46 chr5 73479282 73479479 -79057780 - B4A SINE B4 -77 215 9 8 1145 334 288 12 0 chr5 73479914 73479994 -79057265 - ID4 SINE ID 0 83 3 8 1145 877 71 8 0 chr5 73480728 73480858 -79056401 - B1_Mus1 SINE Alu 0 149 12 8 1145 185 0 0 39 chr5 73481231 73481257 -79056002 + (CACCC)n Simple_repeat Simple_repeat 1 25 0 8 1145 349 271 156 7 chr5 73481577 73481718 -79055541 - RSINE1 SINE B4 0 165 4 8 1145 24 0 0 0 chr5 73481760 73481784 -79055475 + GC_rich Low_complexity Low_complexity 1 24 0 8 1145 21 57 0 0 chr5 73482785 73482820 -79054439 + AT_rich Low_complexity Low_complexity 1 35 0 8 1145 204 40 0 0 chr5 73484110 73484135 -79053124 + (TTA)n Simple_repeat Simple_repeat 2 26 0 8 1145 298 212 76 0 chr5 73484142 73484208 -79053051 - B1F SINE Alu -52 97 27 8 1145 225 143 0 0 chr5 73485831 73485866 -79051393 + MTE-int LTR MaLR 742 776 -804 8 1145 646 190 41 21 chr5 73486374 73486519 -79050740 + B1_Mur2 SINE Alu 2 149 0 8 1145 195 174 109 0 chr5 73487406 73487452 -79049807 - MIR3 SINE MIR -15 193 143 8 1145 586 274 13 27 chr5 73488103 73488253 -79049006 + B1F SINE Alu 1 148 -1 8 1145 216 163 0 0 chr5 73488253 73488296 -79048963 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 8 1145 277 286 195 33 chr5 73488886 73489096 -79048163 - Lx8 LINE L1 -32 7441 7198 8 1145 1105 82 7 7 chr5 73490164 73490311 -79046948 + B1_Mus1 SINE Alu 2 148 0 8 1145 352 264 75 30 chr5 73491874 73492007 -79045252 + B1F SINE Alu 3 141 -8 8 1145 900 147 7 0 chr5 73492141 73492277 -79044982 + B1_Mus1 SINE Alu 1 137 -11 8 1145 186 43 0 0 chr5 73492277 73492300 -79044959 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1145 318 264 0 22 chr5 73494326 73494415 -79042844 - PB1D10 SINE Alu -2 115 29 8 1145 267 300 0 76 chr5 73494395 73494514 -79042745 + RSINE1 SINE B4 56 165 0 8 1145 23 0 0 0 chr5 73494545 73494568 -79042691 + AT_rich Low_complexity Low_complexity 1 23 0 8 1145 436 263 32 7 chr5 73494573 73494712 -79042547 + B1F SINE Alu 1 141 -8 8 1145 259 269 58 29 chr5 73494747 73494816 -79042443 + ID4_ SINE ID 9 79 -4 8 1145 263 288 86 132 chr5 73495136 73495216 -79042043 + MER58B DNA MER1_type 195 276 -65 8 1145 945 157 113 25 chr5 73495216 73495419 -79041840 - URR1B DNA MER1_type 0 225 5 8 1145 263 288 86 132 chr5 73495419 73495490 -79041769 + MER58B DNA MER1_type 277 339 -2 8 1145 1280 61 0 24 chr5 73496153 73496310 -79040949 + B2_Mm2 SINE B2 4 160 -35 8 1145 459 52 0 0 chr5 73496310 73496368 -79040891 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 8 1145 1280 61 0 24 chr5 73496368 73496379 -79040880 + B2_Mm2 SINE B2 161 168 -27 8 1145 948 311 72 20 chr5 73496616 73496964 -79040295 + MTE2b LTR MaLR 1 366 -13 8 1145 240 303 0 38 chr5 73497196 73497275 -79039984 - ID4 SINE ID -7 76 1 8 1145 483 278 78 49 chr5 73498022 73498226 -79039033 + Tigger6a DNA MER2_type 446 655 -428 8 1145 194 156 0 22 chr5 73498462 73498508 -79038751 + G-rich Low_complexity Low_complexity 3 47 0 8 1145 261 139 0 0 chr5 73498609 73498652 -79038607 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 9 1145 1146 74 0 129 chr5 73498851 73499053 -79038206 + L1_Mus2 LINE L1 6387 6562 -4 9 1145 188 67 33 0 chr5 73499062 73499092 -79038167 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 9 1145 1220 164 187 9 chr5 73500293 73500608 -79036651 + ORR1C2 LTR MaLR 1 371 -13 1 1145 1440 228 87 47 chr5 73502753 73503154 -79034105 + MTD LTR MaLR 1 417 -2 2 1145 244 48 23 23 chr5 73503400 73503443 -79033816 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1145 576 204 0 189 chr5 73504996 73505171 -79032088 - B1_Mur2 SINE Alu -6 143 2 4 1145 564 116 0 0 chr5 73505499 73505585 -79031674 + (GGGA)n Simple_repeat Simple_repeat 4 89 0 5 1145 198 103 0 0 chr5 73505589 73505618 -79031641 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1145 188 34 0 33 chr5 73506407 73506437 -79030822 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1145 359 0 43 0 chr5 73506691 73506737 -79030522 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 8 1145 257 284 116 52 chr5 73507141 73507163 -79030096 - B4A SINE B4 -5 287 270 9 1145 279 54 0 0 chr5 73507163 73507200 -79030059 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1145 257 284 116 52 chr5 73507200 73507445 -79029814 - B4A SINE B4 -23 269 3 9 1145 22 0 0 0 chr5 73507832 73507854 -79029405 + AT_rich Low_complexity Low_complexity 1 22 0 1 1145 441 95 0 0 chr5 73508260 73508323 -79028936 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1 1145 267 79 31 31 chr5 73510576 73510641 -79026618 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 1 1145 233 165 0 66 chr5 73510778 73510869 -79026390 + CT-rich Low_complexity Low_complexity 1 85 0 1 1145 186 43 0 0 chr5 73511188 73511211 -79026048 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1145 207 0 0 0 chr5 73511681 73511704 -79025555 + (TC)n Simple_repeat Simple_repeat 1 23 0 1 1145 1096 94 0 32 chr5 73512429 73512583 -79024676 + B1_Mur4 SINE Alu 1 149 -1 1 1145 311 18 53 18 chr5 73512590 73512647 -79024612 + (CAAAC)n Simple_repeat Simple_repeat 2 60 0 1 1145 481 217 19 9 chr5 73514254 73514361 -79022898 + B1F SINE Alu 42 149 0 1 1145 872 183 0 11 chr5 73515498 73515680 -79021579 + GA-rich Low_complexity Low_complexity 1 180 0 2 1145 419 291 0 47 chr5 73516074 73516222 -79021037 + B1F SINE Alu 1 141 -8 2 1145 229 259 0 0 chr5 73516245 73516303 -79020956 + GA-rich Low_complexity Low_complexity 2 59 0 2 1145 341 303 18 11 chr5 73516552 73516687 -79020572 + PB1D10 SINE Alu 1 135 -14 2 1145 524 350 107 57 chr5 73517170 73517664 -79019595 + MER34A LTR ERV1 50 568 -3 2 1145 524 275 23 23 chr5 73517698 73517869 -79019390 - B3A SINE B2 -16 182 12 2 1145 36 0 0 0 chr5 73518031 73518067 -79019192 + AT_rich Low_complexity Low_complexity 1 36 0 2 1145 486 0 0 0 chr5 73518541 73518595 -79018664 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1145 678 283 28 38 chr5 73520546 73520836 -79016423 - B4A SINE B4 -5 287 1 2 1145 441 0 0 0 chr5 73522093 73522142 -79015117 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1145 297 0 0 0 chr5 73522218 73522251 -79015008 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 3 1145 653 112 0 22 chr5 73522675 73522812 -79014447 + (A)n Simple_repeat Simple_repeat 1 134 0 3 1145 711 0 0 0 chr5 73523308 73523387 -79013872 + (GA)n Simple_repeat Simple_repeat 2 80 0 3 1145 291 85 0 0 chr5 73524189 73524236 -79013023 + (A)n Simple_repeat Simple_repeat 1 47 0 3 1145 301 239 32 21 chr5 73525520 73525614 -79011645 + MTEb LTR MaLR 278 372 -7 3 1145 225 94 0 0 chr5 73526338 73526370 -79010889 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1145 416 282 0 0 chr5 73527025 73527135 -79010124 + PB1D7 SINE Alu 2 111 -9 3 1145 303 145 0 0 chr5 73527135 73527204 -79010055 + (TGAA)n Simple_repeat Simple_repeat 1 69 0 3 1145 423 56 0 0 chr5 73527300 73527354 -79009905 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 3 1145 735 50 0 0 chr5 73528009 73528109 -79009150 + (GA)n Simple_repeat Simple_repeat 1 100 0 3 1145 303 235 123 0 chr5 73528163 73528244 -79009015 + B1F SINE Alu 3 93 -56 4 1145 495 224 11 23 chr5 73528271 73528445 -79008814 + (TATATG)n Simple_repeat Simple_repeat 2 173 0 4 1145 216 0 0 0 chr5 73528785 73528809 -79008450 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 4 1145 225 288 0 0 chr5 73528931 73528990 -79008269 - B3A SINE B2 -6 192 134 4 1145 298 194 107 107 chr5 73528994 73529115 -79008144 + B3A SINE B2 77 197 -1 4 1145 3588 171 44 53 chr5 73529175 73529985 -79007274 - RLTR40 LTR ERVK -10 807 5 4 1145 323 217 14 0 chr5 73530670 73530739 -79006520 + ID4_ SINE ID 3 72 -11 4 1145 477 0 0 0 chr5 73530742 73530795 -79006464 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1145 234 0 0 0 chr5 73530795 73530820 -79006439 + (GA)n Simple_repeat Simple_repeat 2 27 0 4 1145 614 290 5 21 chr5 73530935 73531122 -79006137 + MLT2B3 LTR ERVL 1 184 -370 4 1146 428 297 29 0 chr5 73531479 73531617 -79005642 + ID_B1 SINE B4 83 224 0 5 1146 675 178 325 0 chr5 73531672 73531835 -79005424 - B3 SINE B2 0 216 1 5 1146 279 0 0 0 chr5 73532073 73532104 -79005155 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 5 1146 555 305 40 0 chr5 73532465 73532642 -79004617 + ID_B1 SINE B4 29 212 -12 5 1146 1063 63 0 0 chr5 73532860 73533003 -79004256 + B1_Mus1 SINE Alu 6 148 0 5 1146 1734 123 57 98 chr5 73533049 73533436 -79003823 + ORR1C2 LTR MaLR 14 384 0 5 1146 913 205 78 16 chr5 73533626 73533819 -79003440 + B3 SINE B2 2 206 -10 5 1146 23 0 0 0 chr5 73533829 73533852 -79003407 + AT_rich Low_complexity Low_complexity 1 23 0 5 1146 3420 30 2 5 chr5 73534822 73535219 -79002040 - MTA_Mm LTR MaLR 0 396 1 5 1146 1025 200 19 9 chr5 73535237 73535449 -79001810 - B3 SINE B2 0 216 3 5 1146 1233 54 0 0 chr5 73535515 73535662 -79001597 - B1_Mus1 SINE Alu 0 148 2 6 1146 222 250 31 0 chr5 73535985 73536049 -79001210 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 6 1146 830 201 14 0 chr5 73536976 73537120 -79000139 + B1_Mur2 SINE Alu 1 146 -3 6 1146 1517 62 10 5 chr5 73537209 73537403 -78999856 + B2_Mm2 SINE B2 1 195 0 6 1146 261 0 0 0 chr5 73537429 73537458 -78999801 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 6 1146 1147 57 13 0 chr5 73537458 73537615 -78999644 - B2_Mm2 SINE B2 -34 161 3 6 1146 362 216 68 0 chr5 73538846 73538920 -78998339 + ID_B1 SINE B4 144 222 -2 6 1146 260 242 19 75 chr5 73539753 73539860 -78997399 + L2a LINE L2 3326 3426 0 6 1146 970 161 153 15 chr5 73539871 73540067 -78997192 + URR1B DNA MER1_type 3 225 0 6 1146 258 354 21 0 chr5 73540984 73541099 -78996160 + B1F SINE Alu 10 127 -22 6 1146 763 175 184 5 chr5 73541556 73541746 -78995513 + URR1A DNA MER1_type 1 224 -2 7 1146 739 202 9 45 chr5 73542410 73542633 -78994626 + MTD LTR MaLR 203 417 -2 7 1146 306 107 0 0 chr5 73542720 73542776 -78994483 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1146 600 211 23 0 chr5 73542778 73542906 -78994353 - B3A SINE B2 -36 162 32 7 1146 710 275 19 77 chr5 73543296 73543556 -78993703 + B4A SINE B4 13 257 -35 7 1146 205 71 0 87 chr5 73543870 73543916 -78993343 + CT-rich Low_complexity Low_complexity 2 43 0 7 1146 513 104 0 0 chr5 73544102 73544179 -78993080 + (GGA)n Simple_repeat Simple_repeat 2 78 0 7 1146 1539 205 9 9 chr5 73544249 73544584 -78992675 + L1MC LINE L1 4606 4940 -1206 7 1146 210 71 0 0 chr5 73544595 73544623 -78992636 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1146 369 289 62 41 chr5 73544623 73544818 -78992441 + L1MC LINE L1 4942 5140 -1006 7 1146 229 270 46 31 chr5 73545093 73545158 -78992101 + L1MC LINE L1 5528 5593 -751 7 1146 594 218 51 64 chr5 73545413 73545570 -78991689 - RSINE1 SINE B4 0 165 11 7 1146 868 103 28 35 chr5 73545574 73545715 -78991544 - B1_Mur4 SINE Alu -6 144 5 8 1146 432 227 25 76 chr5 73546322 73546441 -78990818 + B1_Mur2 SINE Alu 18 130 -19 8 1146 2481 193 86 30 chr5 73546475 73547047 -78990212 + Lx2B LINE L1 6386 6989 -11 8 1146 198 0 0 0 chr5 73547051 73547073 -78990186 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 8 1146 644 255 75 0 chr5 73547575 73547787 -78989472 + Lx8 LINE L1 7149 7376 -97 8 1146 266 188 70 28 chr5 73547797 73547868 -78989391 + PB1D10 SINE Alu 43 116 -1 8 1146 912 318 96 61 chr5 73548108 73548747 -78988512 + MTE-int LTR MaLR 780 1440 -140 8 1146 363 173 24 120 chr5 73549189 73549314 -78987945 + MT2B LTR ERVL 152 264 -337 8 1146 901 121 7 0 chr5 73549202 73549343 -78987916 + B1_Mur4 SINE Alu 3 144 -6 8 1146 737 12 0 0 chr5 73549350 73549432 -78987827 - L1_Mm LINE L1 -344 5539 5458 8 1146 1622 5 136 0 chr5 73549432 73549631 -78987628 + L1Md_T LINE L1 6357 6582 0 9 1146 1155 292 124 19 chr5 73549835 73550424 -78986835 + Lx8 LINE L1 6823 7473 0 9 1146 714 172 45 0 chr5 73550733 73550867 -78986392 + B1_Mur2 SINE Alu 10 149 0 9 1146 730 113 8 8 chr5 73551557 73551691 -78985568 + (TG)n Simple_repeat Simple_repeat 1 134 0 9 1146 402 179 49 69 chr5 73553616 73553657 -78983602 + L1MB7 LINE L1 5748 5789 -395 9 1146 4605 121 22 31 chr5 73553657 73554419 -78982840 - RMER6A LTR ERVK 0 756 2 9 1146 402 190 60 65 chr5 73554419 73554504 -78982755 + L1MB7 LINE L1 5790 5878 -300 9 1146 284 286 40 73 chr5 73554546 73554697 -78982562 + L1MB7 LINE L1 6032 6177 -7 9 1146 195 42 0 0 chr5 73555597 73555621 -78981638 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 9 1146 186 43 0 0 chr5 73555627 73555650 -78981609 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 9 1146 4393 41 4 11 chr5 73555810 73556351 -78980908 + L1Md_F3 LINE L1 6047 6583 -1 9 1146 642 60 0 0 chr5 73556672 73556755 -78980504 + (TG)n Simple_repeat Simple_repeat 2 84 0 9 1146 181 326 99 22 chr5 73558562 73558653 -78978606 + MIRm SINE MIR 39 136 -140 1 1146 249 33 0 0 chr5 73559565 73559595 -78977664 + (CAG)n Simple_repeat Simple_repeat 3 32 0 1 1146 1039 270 47 23 chr5 73562041 73562341 -78974918 + Lx8 LINE L1 6527 6833 -640 1 1146 1220 278 76 34 chr5 73562363 73562865 -78974394 + Lx8 LINE L1 6944 7466 -7 1 1146 341 276 158 39 chr5 73563716 73563950 -78973309 + L1MC3 LINE L1 6766 7027 -968 1 1146 246 221 114 25 chr5 73563959 73564038 -78973221 + MLT1A0 LTR MaLR 1 86 -279 1 1146 262 185 56 0 chr5 73564318 73564372 -78972887 + L1MC3 LINE L1 7031 7087 -908 1 1146 822 308 62 9 chr5 73564374 73564695 -78972564 + MER68 LTR ERVL 1 338 -225 1 1146 180 0 0 0 chr5 73564701 73564721 -78972538 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1146 558 180 122 8 chr5 73564813 73564936 -78972323 - B1_Mur3 SINE Alu -1 148 12 1 1146 345 307 15 82 chr5 73564839 73565034 -78972225 - ID_B1 SINE B4 -37 187 6 1 1146 801 54 0 0 chr5 73565062 73565173 -78972086 + (TG)n Simple_repeat Simple_repeat 1 111 0 1 1146 349 259 66 47 chr5 73565308 73565502 -78971757 + L1MC3 LINE L1 7496 7694 -91 1 1146 324 0 0 0 chr5 73565549 73565585 -78971674 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1146 315 193 11 22 chr5 73566295 73566385 -78970874 + GA-rich Low_complexity Low_complexity 3 91 0 1 1146 198 0 0 0 chr5 73566408 73566430 -78970829 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1146 860 304 148 54 chr5 73566437 73566517 -78970742 - MER44D DNA MER2_type -1 704 627 1 1146 1953 127 93 60 chr5 73566517 73566870 -78970389 - ORR1B2 LTR MaLR 0 367 3 1 1146 860 304 148 54 chr5 73566870 73567404 -78969855 - MER44D DNA MER2_type -79 626 32 1 1146 852 171 203 26 chr5 73567543 73567735 -78969524 + URR1A DNA MER1_type 1 226 0 1 1146 216 0 0 0 chr5 73567805 73567829 -78969430 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 1 1146 241 127 36 18 chr5 73568120 73568176 -78969083 + GA-rich Low_complexity Low_complexity 4 60 0 1 1146 805 266 22 6 chr5 73568634 73568812 -78968447 + B3A SINE B2 2 182 -16 1 1146 1309 81 26 41 chr5 73569129 73569323 -78967936 + B2_Mm2 SINE B2 3 193 -2 1 1146 694 279 79 8 chr5 73569350 73569698 -78967561 - Lx7 LINE L1 -1 7695 7191 1 1146 371 260 63 0 chr5 73570552 73570679 -78966580 + ORR1D2 LTR MaLR 1 135 -235 1 1146 393 172 118 0 chr5 73570693 73570786 -78966473 + ORR1D2 LTR MaLR 267 370 0 1 1146 1279 82 43 11 chr5 73570930 73571114 -78966145 + B2_Mm2 SINE B2 2 191 -4 1 1146 279 0 0 0 chr5 73571440 73571471 -78965788 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1146 21 0 0 0 chr5 73571718 73571739 -78965520 + AT_rich Low_complexity Low_complexity 1 21 0 1 1146 304 315 0 42 chr5 73572211 73572307 -78964952 - PB1D10 SINE Alu -8 109 18 1 1146 595 193 127 0 chr5 73572361 73572511 -78964748 + B4A SINE B4 1 169 -123 1 1146 285 29 0 0 chr5 73572609 73572643 -78964616 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1146 297 68 0 0 chr5 73572729 73572773 -78964486 + (TCTG)n Simple_repeat Simple_repeat 3 46 0 1 1146 560 230 59 7 chr5 73572775 73572911 -78964348 - B3A SINE B2 -54 144 2 1 1146 284 291 35 43 chr5 73573360 73573475 -78963784 - PB1D7 SINE Alu -5 115 2 1 1146 180 77 0 0 chr5 73573774 73573800 -78963459 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1146 186 43 0 0 chr5 73573888 73573911 -78963348 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1146 350 366 62 16 chr5 73574057 73574251 -78963008 + MER58A DNA MER1_type 12 214 -10 1 1146 26 0 0 0 chr5 73574895 73574921 -78962338 + AT_rich Low_complexity Low_complexity 1 26 0 1 1146 3593 154 38 42 chr5 73575492 73575822 -78961437 + RMER6D LTR ERVK 1 332 -388 1 1146 1230 67 84 0 chr5 73575822 73576000 -78961259 + B2_Mm1a SINE B2 1 193 0 1 1146 3593 154 38 42 chr5 73576000 73576385 -78960874 + RMER6D LTR ERVK 333 713 -7 1 1146 352 310 23 23 chr5 73577337 73577367 -78959892 + ID_B1 SINE B4 91 222 -2 1 1146 398 245 39 0 chr5 73577367 73577469 -78959790 + B1F SINE Alu 42 147 -2 1 1146 285 214 169 14 chr5 73577869 73577940 -78959319 - ID4 SINE ID 0 83 2 1 1146 238 286 48 72 chr5 73578225 73578391 -78958868 - Tigger13a DNA MER2_type -109 662 501 1 1146 358 245 65 39 chr5 73578475 73578628 -78958631 - Tigger13a DNA MER2_type -418 353 197 1 1146 408 246 239 0 chr5 73579026 73579156 -78958103 + RSINE1 SINE B4 3 163 -2 1 1146 601 167 9 18 chr5 73579193 73579303 -78957956 - B1_Mur2 SINE Alu -1 148 40 1 1146 231 103 0 0 chr5 73579369 73579408 -78957851 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1146 387 310 28 21 chr5 73579471 73579616 -78957643 + B1F1 SINE Alu 2 147 -2 1 1146 399 304 42 50 chr5 73579979 73580218 -78957041 - Lx7 LINE L1 -564 7132 6896 1 1146 204 228 35 0 chr5 73580274 73580331 -78956928 + GA-rich Low_complexity Low_complexity 2 60 0 1 1146 964 178 33 38 chr5 73580349 73580559 -78956700 - B3 SINE B2 -6 210 2 1 1146 343 320 34 13 chr5 73580577 73580726 -78956533 + RSINE1 SINE B4 2 153 -12 1 1146 192 167 0 0 chr5 73580762 73580810 -78956449 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1146 207 114 0 0 chr5 73580826 73580861 -78956398 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 1 1146 481 282 29 44 chr5 73580868 73581005 -78956254 + RSINE1 SINE B4 2 136 -29 1 1146 351 0 0 0 chr5 73581006 73581045 -78956214 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1146 1092 75 0 0 chr5 73581720 73581867 -78955392 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 1 1146 22 0 0 0 chr5 73582577 73582599 -78954660 + AT_rich Low_complexity Low_complexity 1 22 0 1 1146 336 48 0 0 chr5 73583597 73583639 -78953620 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1146 1489 83 0 0 chr5 73583658 73583850 -78953409 - B2_Mm2 SINE B2 -2 193 2 1 1146 1119 61 165 0 chr5 73583895 73584059 -78953200 + B2_Mm2 SINE B2 1 191 -4 1 1146 520 252 22 0 chr5 73584625 73584760 -78952499 + ID_B1 SINE B4 68 205 -19 1 1146 1072 168 54 10 chr5 73585625 73585830 -78951429 + B3 SINE B2 1 214 -2 1 1146 26 0 0 0 chr5 73585833 73585859 -78951400 + AT_rich Low_complexity Low_complexity 1 26 0 1 1146 250 270 113 26 chr5 73586612 73586806 -78950453 - L1MC5 LINE L1 -144 7817 7607 1 1146 369 0 0 0 chr5 73586943 73586984 -78950275 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1146 453 110 0 0 chr5 73587276 73587349 -78949910 + (CATA)n Simple_repeat Simple_repeat 2 74 0 1 1146 904 178 0 7 chr5 73587361 73587508 -78949751 + B1_Mur2 SINE Alu 3 148 -1 1 1146 424 241 69 28 chr5 73587749 73587894 -78949365 + RSINE1 SINE B4 1 151 -14 1 1146 291 222 0 65 chr5 73589000 73589077 -78948182 + MT2B LTR ERVL 193 264 -337 1 1146 753 58 0 9 chr5 73589008 73589113 -78948146 + B1_Mus2 SINE Alu 44 147 0 1 1146 728 292 5 15 chr5 73589431 73589629 -78947630 + B3 SINE B2 14 209 -7 1 1146 441 225 164 12 chr5 73589992 73590163 -78947096 + B3 SINE B2 20 216 0 1 1146 390 271 128 7 chr5 73590660 73590801 -78946458 - RSINE1 SINE B4 -7 158 1 1 1146 750 200 66 11 chr5 73591497 73591679 -78945580 - URR1A DNA MER1_type -5 221 30 1 1146 338 293 60 0 chr5 73591774 73591890 -78945369 + B3A SINE B2 46 168 -30 1 1146 355 292 98 55 chr5 73592081 73592244 -78945015 + B4A SINE B4 123 292 0 1 1146 469 257 26 59 chr5 73592646 73592799 -78944460 - RSINE1 SINE B4 -1 164 17 1 1146 760 269 127 12 chr5 73593178 73593437 -78943822 - B4 SINE B4 -2 290 2 1 1146 242 327 27 18 chr5 73593731 73593843 -78943416 + L1M5 LINE L1 5589 5701 -423 1 1146 478 231 37 9 chr5 73593863 73593972 -78943287 + PB1D9 SINE Alu 2 113 -7 1 1146 1176 282 172 31 chr5 73593982 73594404 -78942855 + Lx8 LINE L1 6818 7285 -188 1 1146 378 0 0 0 chr5 73594404 73594446 -78942813 + (CACG)n Simple_repeat Simple_repeat 4 45 0 1 1146 1176 282 172 31 chr5 73594446 73594598 -78942661 + Lx8 LINE L1 7286 7472 -1 1 1146 681 226 67 62 chr5 73595370 73595549 -78941710 + B3A SINE B2 1 180 -18 1 1146 968 79 14 0 chr5 73595547 73595686 -78941573 + B1_Mus1 SINE Alu 8 148 0 1 1146 872 246 44 5 chr5 73595916 73595950 -78941309 - B3 SINE B2 -4 212 179 1 1146 408 40 0 0 chr5 73595950 73596000 -78941259 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1146 872 246 44 5 chr5 73596000 73596169 -78941090 - B3 SINE B2 -38 178 1 1 1146 501 286 43 0 chr5 73596665 73596805 -78940454 + RSINE1 SINE B4 6 151 -14 1 1146 245 305 24 0 chr5 73596940 73597022 -78940237 + L1MC5 LINE L1 7701 7784 -177 1 1146 26 0 0 0 chr5 73598523 73598549 -78938710 + AT_rich Low_complexity Low_complexity 1 26 0 1 1146 3155 34 45 0 chr5 73598782 73599161 -78938098 - MTA_Mm LTR MaLR 0 396 1 1 1146 843 115 31 0 chr5 73599579 73599709 -78937550 + B1_Mur4 SINE Alu 16 149 -1 1 1146 200 35 35 0 chr5 73599710 73599739 -78937520 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 1146 588 14 0 0 chr5 73599768 73599837 -78937422 + (GGGGA)n Simple_repeat Simple_repeat 3 71 0 1 1146 378 277 170 28 chr5 73599933 73600115 -78937144 + ID_B1 SINE B4 4 211 -13 1 1146 216 0 0 0 chr5 73600874 73600898 -78936361 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1146 211 289 137 49 chr5 73604170 73604272 -78932987 - PB1D10 SINE Alu -2 115 5 1 1146 316 248 153 29 chr5 73604207 73604344 -78932915 - ID_B1 SINE B4 -67 157 4 1 1146 235 258 93 50 chr5 73604700 73604839 -78932420 + MTE2b LTR MaLR 81 225 -196 1 1146 465 103 0 0 chr5 73604839 73604907 -78932352 + (GA)n Simple_repeat Simple_repeat 2 69 0 1 1146 520 224 23 46 chr5 73604928 73605059 -78932200 + MTE2b LTR MaLR 222 349 -30 1 1146 490 261 77 56 chr5 73605186 73605381 -78931878 - MTEb LTR MaLR -173 206 8 1 1146 270 116 0 0 chr5 73606608 73606651 -78930608 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1146 622 239 31 83 chr5 73606652 73606844 -78930415 - B3A SINE B2 -16 182 1 1 1146 238 333 23 11 chr5 73607084 73607172 -78930087 + MLT1F2 LTR MaLR 43 131 -429 2 1146 342 267 87 90 chr5 73607250 73607663 -78929596 + L1MB4 LINE L1 5777 6158 -25 2 1146 283 184 37 0 chr5 73607663 73607730 -78929529 + ID4_ SINE ID 29 97 -55 2 1146 225 331 11 147 chr5 73607730 73607907 -78929352 + MLT1F2 LTR MaLR 291 443 -117 2 1146 213 39 0 0 chr5 73608315 73608341 -78928918 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 2 1146 632 200 21 49 chr5 73608341 73608483 -78928776 - B1_Mur2 SINE Alu -10 139 2 2 1146 375 258 72 0 chr5 73608497 73608594 -78928665 - B1F SINE Alu -43 106 3 2 1146 287 196 85 85 chr5 73608800 73608906 -78928353 + L1MC5 LINE L1 6679 6784 -1177 2 1146 286 141 62 0 chr5 73609063 73609127 -78928132 + MER58A DNA MER1_type 51 118 -106 2 1146 204 125 0 0 chr5 73609912 73609944 -78927315 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1146 1480 160 89 33 chr5 73610351 73610687 -78926572 + ORR1B2 LTR MaLR 5 359 -8 2 1146 344 222 41 82 chr5 73611657 73611755 -78925504 + MTEb LTR MaLR 286 379 0 2 1146 417 256 102 16 chr5 73611963 73612090 -78925169 + RSINE1 SINE B4 27 164 -1 2 1146 1200 100 39 11 chr5 73612436 73612593 -78924666 + B2_Mm1a SINE B2 2 159 -34 2 1146 225 0 0 0 chr5 73612593 73612618 -78924641 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 2 1146 1200 100 39 11 chr5 73612618 73612642 -78924617 + B2_Mm1a SINE B2 160 187 -6 2 1146 246 297 65 39 chr5 73612650 73612727 -78924532 + ID4 SINE ID 2 80 -3 2 1146 598 214 57 7 chr5 73612759 73612900 -78924359 + B1_Mur1 SINE Alu 2 149 0 2 1146 468 254 129 16 chr5 73613476 73613600 -78923659 + ID_B1 SINE B4 81 218 -6 2 1146 22 0 0 0 chr5 73613995 73614017 -78923242 + AT_rich Low_complexity Low_complexity 1 22 0 2 1146 317 135 0 82 chr5 73614020 73614117 -78923142 + A-rich Low_complexity Low_complexity 3 91 0 2 1146 931 301 109 24 chr5 73614330 73614834 -78922425 - Lx8 LINE L1 -86 7387 6841 2 1146 209 213 0 0 chr5 73614877 73614924 -78922335 + A-rich Low_complexity Low_complexity 1 47 0 2 1146 1274 102 11 0 chr5 73615266 73615442 -78921817 + B2_Mm1t SINE B2 2 179 -14 2 1146 340 117 355 0 chr5 73615474 73615584 -78921675 + B2_Mm2 SINE B2 47 195 0 2 1146 372 246 174 15 chr5 73615798 73615930 -78921329 + MLT1A0 LTR MaLR 212 364 -1 2 1146 332 265 52 40 chr5 73616053 73616226 -78921033 + L1MB8 LINE L1 5630 5804 -508 2 1146 230 304 29 10 chr5 73616259 73616362 -78920897 + L1MB8 LINE L1 6065 6169 -9 2 1146 436 32 16 16 chr5 73616364 73616427 -78920832 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1146 279 312 133 0 chr5 73616619 73616747 -78920512 + Tigger13a DNA MER2_type 151 295 -476 2 1146 486 0 0 0 chr5 73616907 73616961 -78920298 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1146 1143 82 7 0 chr5 73617013 73617160 -78920099 - B1_Mus1 SINE Alu 0 148 1 2 1146 640 270 87 30 chr5 73617186 73617450 -78919809 - B4A SINE B4 -12 280 2 2 1146 232 379 0 46 chr5 73617568 73617676 -78919583 - ID_B1 SINE B4 -8 216 114 2 1146 789 220 74 10 chr5 73617726 73617928 -78919331 + B3 SINE B2 1 215 -1 2 1146 180 0 0 0 chr5 73618210 73618230 -78919029 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 1146 1142 36 7 0 chr5 73618378 73618516 -78918743 + B2_Mm2 SINE B2 2 140 -55 2 1146 382 262 28 37 chr5 73618520 73618627 -78918632 - RSINE1 SINE B4 -56 109 4 2 1146 182 259 0 36 chr5 73619044 73619100 -78918159 + MIRc SINE MIR 101 154 -114 2 1146 401 53 0 18 chr5 73619482 73619539 -78917720 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1146 366 308 122 13 chr5 73619582 73619812 -78917447 - L1MB3 LINE L1 -87 6096 5842 2 1146 712 124 82 68 chr5 73620401 73620548 -78916711 + B1_Mur2 SINE Alu 1 149 0 2 1146 257 0 30 0 chr5 73622903 73622936 -78914323 + (TATG)n Simple_repeat Simple_repeat 2 35 0 2 1146 474 281 102 0 chr5 73622968 73623096 -78914163 - RSINE1 SINE B4 -22 143 3 2 1146 270 299 0 0 chr5 73623125 73623192 -78914067 + GA-rich Low_complexity Low_complexity 3 69 0 2 1146 751 209 57 51 chr5 73623650 73623878 -78913381 + B4A SINE B4 75 285 -7 2 1146 217 238 68 45 chr5 73624219 73624307 -78912952 - L2 LINE L2 -1213 2206 2117 2 1146 335 261 91 0 chr5 73624320 73624408 -78912851 + MTE2b LTR MaLR 5 100 -279 2 1146 738 251 131 145 chr5 73624610 73624730 -78912529 + MLT2D LTR ERVL 1 143 -271 2 1146 307 261 26 43 chr5 73624730 73624846 -78912413 + PB1D7 SINE Alu 2 115 -5 2 1146 738 251 131 145 chr5 73624846 73625101 -78912158 + MLT2D LTR ERVL 144 377 -37 2 1146 372 22 0 0 chr5 73625101 73625146 -78912113 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1146 738 251 131 145 chr5 73625146 73625189 -78912070 + MLT2D LTR ERVL 378 414 0 2 1146 420 221 5 192 chr5 73625285 73625432 -78911827 + L1MB7 LINE L1 6004 6111 -73 2 1146 473 204 264 6 chr5 73625432 73625595 -78911664 - B3 SINE B2 -10 206 2 2 1146 420 221 5 192 chr5 73625595 73625660 -78911599 + L1MB7 LINE L1 6112 6176 -8 2 1146 194 128 0 25 chr5 73625667 73625707 -78911552 + GA-rich Low_complexity Low_complexity 3 41 0 2 1146 259 163 0 0 chr5 73626488 73626531 -78910728 + tRNA-Gly-GGA tRNA tRNA 1 43 -32 2 1146 1142 89 0 0 chr5 73627005 73627151 -78910108 - B1_Mm SINE Alu 0 147 2 2 1146 230 182 104 15 chr5 73627289 73627356 -78909903 + L1MA5 LINE L1 6126 6198 -102 2 1146 577 215 138 0 chr5 73627484 73627614 -78909645 - RSINE1 SINE B4 -17 148 1 2 1146 297 300 38 0 chr5 73627652 73627732 -78909527 - PB1D7 SINE Alu -3 117 35 2 1146 397 256 0 53 chr5 73627750 73627845 -78909414 - PB1D10 SINE Alu 0 117 28 2 1146 22 0 0 0 chr5 73627882 73627904 -78909355 + AT_rich Low_complexity Low_complexity 1 22 0 2 1146 419 304 157 59 chr5 73628014 73628502 -78908757 + MLT1H1 LTR MaLR 4 577 -2 2 1146 1070 70 35 0 chr5 73628824 73628966 -78908293 - B1_Mm SINE Alu 0 147 1 2 1146 279 0 0 0 chr5 73629208 73629239 -78908020 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1146 587 203 53 0 chr5 73629239 73629372 -78907887 - B1_Mur4 SINE Alu -10 140 1 2 1146 226 211 102 119 chr5 73629372 73629412 -78907847 - MT2B LTR ERVL -443 158 121 2 1146 273 372 63 48 chr5 73629528 73629799 -78907460 + B4 SINE B4 3 277 -15 2 1146 315 0 0 0 chr5 73629826 73629861 -78907398 + (TC)n Simple_repeat Simple_repeat 1 35 0 2 1146 331 384 33 28 chr5 73629988 73630164 -78907095 + MLT1J LTR MaLR 26 202 -310 2 1146 672 178 158 8 chr5 73630164 73630362 -78906897 - MTD LTR MaLR 0 419 181 2 1146 551 173 9 0 chr5 73630362 73630472 -78906787 + CT-rich Low_complexity Low_complexity 4 114 0 2 1146 306 0 0 0 chr5 73630477 73630511 -78906748 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1146 719 174 0 28 chr5 73630511 73630653 -78906606 - B1_Mus1 SINE Alu -9 139 2 2 1146 878 205 61 56 chr5 73630657 73630853 -78906406 - MTD LTR MaLR -213 206 10 2 1146 1607 27 16 0 chr5 73631129 73631316 -78905943 + B2_Mm1a SINE B2 2 191 -2 2 1146 937 49 130 0 chr5 73631430 73631553 -78905706 + B1_Mus1 SINE Alu 5 143 -5 2 1146 392 168 21 0 chr5 73631555 73631650 -78905609 + GA-rich Low_complexity Low_complexity 4 100 0 2 1146 559 161 189 24 chr5 73632051 73632178 -78905081 + B1_Mur2 SINE Alu 1 148 -1 2 1146 364 212 30 30 chr5 73632197 73632362 -78904897 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 2 1146 856 185 33 27 chr5 73632957 73633140 -78904119 + B3 SINE B2 32 215 -1 2 1146 450 0 0 0 chr5 73634295 73634345 -78902914 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1146 1667 148 99 62 chr5 73634393 73634747 -78902512 + ORR1B2 LTR MaLR 1 367 0 2 1146 180 0 0 0 chr5 73634799 73634819 -78902440 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1146 302 231 267 100 chr5 73635134 73635149 -78902110 - ID_B1 SINE B4 0 224 85 2 1146 413 284 57 29 chr5 73635149 73635254 -78902005 - PB1D10 SINE Alu -6 111 4 2 1146 579 162 0 0 chr5 73635282 73635381 -78901878 + B4A SINE B4 2 100 -192 2 1146 486 49 0 0 chr5 73635592 73635653 -78901606 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1146 495 298 84 44 chr5 73635703 73635977 -78901282 + B4A SINE B4 3 287 -5 2 1146 186 43 0 0 chr5 73636111 73636134 -78901125 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1146 646 190 9 0 chr5 73636380 73636496 -78900763 - B1_Mur3 SINE Alu -32 117 1 2 1146 290 236 162 9 chr5 73636505 73636616 -78900643 - Lx7 LINE L1 0 7696 7569 2 1146 1241 251 49 9 chr5 73636637 73636966 -78900293 - Lx7 LINE L1 -257 7439 7098 2 1146 535 281 130 10 chr5 73636964 73637312 -78899947 - L1M4 LINE L1 -871 5275 4873 2 1146 520 236 149 32 chr5 73637623 73637811 -78899448 - L1M3 LINE L1 -494 5686 5477 2 1146 201 300 89 18 chr5 73637991 73638103 -78899156 - L3 LINE CR1 -689 3800 3681 2 1146 243 0 0 0 chr5 73638179 73638206 -78899053 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1146 340 267 28 28 chr5 73638554 73638662 -78898597 + RSINE1 SINE B4 3 110 -55 2 1146 271 232 0 78 chr5 73638726 73638829 -78898430 + B4A SINE B4 190 284 -8 2 1146 643 163 38 61 chr5 73638933 73639064 -78898195 + B1_Mur4 SINE Alu 23 150 0 2 1146 226 264 0 0 chr5 73639243 73639296 -78897963 + RSINE1 SINE B4 11 63 -102 2 1146 370 272 11 11 chr5 73639346 73639439 -78897820 + B3A SINE B2 1 93 -105 2 1146 653 275 76 42 chr5 73640102 73640364 -78896895 - MLT1D LTR MaLR -3 502 232 2 1146 541 271 137 28 chr5 73640343 73640525 -78896734 + B3 SINE B2 15 216 0 2 1146 356 286 78 39 chr5 73640737 73640890 -78896369 + RSINE1 SINE B4 5 163 -2 2 1146 282 336 146 33 chr5 73641168 73641319 -78895940 + ID_B1 SINE B4 2 169 -55 2 1146 626 259 11 22 chr5 73641319 73641497 -78895762 + Lx7 LINE L1 7257 7432 -264 2 1146 354 193 36 10 chr5 73641509 73641610 -78895649 + Lx7 LINE L1 7604 7696 0 2 1146 339 244 220 38 chr5 73642026 73642235 -78895024 + L1MB7 LINE L1 5928 6174 -10 3 1146 422 309 89 0 chr5 73642255 73642378 -78894881 + RSINE1 SINE B4 3 136 -29 3 1146 1168 133 26 11 chr5 73642473 73642663 -78894596 + B2_Mm1t SINE B2 1 193 0 3 1146 964 221 33 14 chr5 73642665 73642876 -78894383 - B3 SINE B2 0 216 2 3 1146 242 233 0 32 chr5 73645085 73645147 -78892112 + tRNA-Ala-GCY_ tRNA tRNA 3 62 -13 3 1146 24 0 0 0 chr5 73648643 73648667 -78888592 + AT_rich Low_complexity Low_complexity 1 24 0 3 1146 336 262 12 0 chr5 73649282 73649362 -78887897 - ID4 SINE ID -2 81 1 3 1146 697 332 26 41 chr5 73649484 73649751 -78887508 - MER2 DNA MER2_type 0 345 83 3 1146 446 279 0 9 chr5 73650488 73650593 -78886666 - ID_B1 SINE B4 -34 190 87 3 1146 319 301 37 74 chr5 73650597 73650787 -78886472 + L1MA4 LINE L1 6053 6235 -65 3 1146 1221 79 84 6 chr5 73651852 73652030 -78885229 - B2_Mm1a SINE B2 -1 192 1 3 1146 329 0 24 0 chr5 73652064 73652105 -78885154 + (TTTTTG)n Simple_repeat Simple_repeat 6 47 0 3 1146 1342 14 0 0 chr5 73652105 73652253 -78885006 - B1_Mus1 SINE Alu 0 148 1 3 1146 22 0 0 0 chr5 73652261 73652283 -78884976 + AT_rich Low_complexity Low_complexity 1 22 0 3 1146 715 165 9 0 chr5 73652286 73652401 -78884858 - B1_Mur3 SINE Alu -6 143 28 3 1146 556 333 0 45 chr5 73652692 73652871 -78884388 - B4A SINE B4 -88 204 34 3 1146 609 217 15 8 chr5 73652900 73653030 -78884229 - B1_Mur1 SINE Alu -17 132 2 3 1146 252 0 0 0 chr5 73653318 73653346 -78883913 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1146 516 235 80 7 chr5 73653353 73653490 -78883769 - B3 SINE B2 -66 150 4 3 1146 237 211 0 0 chr5 73653490 73653534 -78883725 - B3 SINE B2 -171 45 2 3 1146 282 56 0 0 chr5 73654027 73654063 -78883196 + (TC)n Simple_repeat Simple_repeat 2 37 0 3 1146 423 0 0 0 chr5 73654067 73654114 -78883145 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1146 210 91 0 0 chr5 73655386 73655419 -78881840 + (G)n Simple_repeat Simple_repeat 1 33 0 3 1146 654 333 46 53 chr5 73655610 73655914 -78881345 - MER58B DNA MER1_type 0 341 40 3 1146 590 221 78 53 chr5 73656029 73656235 -78881024 + B3A SINE B2 3 213 -3 3 1146 1913 167 49 54 chr5 73656282 73656650 -78880609 + ORR1C1 LTR MaLR 11 376 -2 3 1146 305 345 132 68 chr5 73656658 73657038 -78880221 - L2b LINE L2 -58 3317 2914 3 1146 360 64 0 0 chr5 73657201 73657248 -78880011 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1146 2289 240 145 56 chr5 73657470 73658270 -78878989 + RMER19B LTR ERVK 1 871 -31 3 1146 1636 42 0 0 chr5 73658272 73658464 -78878795 + B2_Mm1t SINE B2 2 193 0 3 1146 365 271 31 0 chr5 73658504 73658600 -78878659 - RSINE1 SINE B4 -64 101 3 3 1146 319 289 125 0 chr5 73658932 73659036 -78878223 - MER53 DNA hAT -76 117 1 3 1146 316 227 22 144 chr5 73659417 73659556 -78877703 + ID_B1 SINE B4 5 126 -98 3 1146 269 244 74 37 chr5 73659836 73659917 -78877342 + MER2B DNA MER2_type 250 333 -3 3 1146 267 230 135 0 chr5 73660304 73660378 -78876881 + PB1D9 SINE Alu 1 84 -36 3 1146 216 0 0 0 chr5 73660713 73660737 -78876522 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3 1146 378 159 0 0 chr5 73661029 73661098 -78876161 + CT-rich Low_complexity Low_complexity 2 70 0 3 1146 516 306 14 0 chr5 73661129 73661276 -78875983 + RSINE1 SINE B4 3 151 -14 3 1147 258 300 12 0 chr5 73663351 73663431 -78873828 + ID4 SINE ID 3 83 0 3 1147 201 263 0 34 chr5 73663706 73663765 -78873494 - MIRb SINE MIR -183 85 29 3 1147 480 343 98 24 chr5 73663771 73664025 -78873234 + MamRep605 Unknown Unknown 466 738 -138 3 1147 650 335 97 16 chr5 73664860 73665294 -78871965 - L2 LINE L2 -397 3022 2554 3 1147 377 367 6 29 chr5 73665328 73665502 -78871757 - L2 LINE L2 -1004 2415 2246 3 1147 638 230 96 0 chr5 73665510 73665645 -78871614 + ID_B1 SINE B4 15 162 -62 3 1147 1082 132 42 6 chr5 73665674 73665841 -78871418 - B2_Mm2 SINE B2 -22 173 1 3 1147 245 316 0 13 chr5 73665898 73665921 -78871338 + polypurine Low_complexity Low_complexity 3 25 0 3 1147 1215 72 0 16 chr5 73665921 73666104 -78871155 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1147 245 316 0 13 chr5 73666104 73666157 -78871102 + polypurine Low_complexity Low_complexity 26 78 0 3 1147 1954 146 0 62 chr5 73666220 73666556 -78870703 + Lx4A LINE L1 6742 7056 -2 3 1147 595 94 0 20 chr5 73666561 73666659 -78870600 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 3 1147 234 354 184 36 chr5 73666660 73667503 -78869756 - L2 LINE L2 -1209 2210 1236 3 1147 3299 58 0 2 chr5 73667503 73667904 -78869355 + MTB LTR MaLR 1 400 0 3 1147 234 355 160 39 chr5 73667904 73668332 -78868927 - L2 LINE L2 -2184 1235 776 3 1147 2277 141 41 134 chr5 73668334 73668922 -78868337 - RMER15 LTR ERVL -11 564 32 3 1147 446 259 0 51 chr5 73669055 73669173 -78868086 + ID_B1 SINE B4 87 198 -26 3 1147 358 290 23 61 chr5 73669173 73669187 -78868072 + B1F SINE Alu 6 132 -17 3 1147 528 198 0 87 chr5 73669271 73669398 -78867861 - PB1D10 SINE Alu -1 116 1 3 1147 211 238 0 31 chr5 73669400 73669431 -78867828 + polypyrimidine Low_complexity Low_complexity 36 65 0 3 1147 1215 41 7 0 chr5 73669431 73669578 -78867681 - B1_Mus1 SINE Alu 0 148 1 3 1147 211 238 0 31 chr5 73669578 73669611 -78867648 + polypyrimidine Low_complexity Low_complexity 3 35 0 3 1147 237 65 0 0 chr5 73671501 73671532 -78865727 + (TAA)n Simple_repeat Simple_repeat 2 32 0 3 1147 248 262 94 8 chr5 73671859 73671986 -78865273 - B1F1 SINE Alu -7 142 5 3 1147 1313 232 83 32 chr5 73672414 73672713 -78864546 + ORR1D2 LTR MaLR 12 333 -37 3 1147 1475 210 228 5 chr5 73672713 73673148 -78864111 - MT2A LTR ERVL 0 533 2 3 1147 1313 232 83 32 chr5 73673148 73673186 -78864073 + ORR1D2 LTR MaLR 334 366 -4 3 1147 430 289 88 65 chr5 73673290 73673505 -78863754 - B4 SINE B4 -63 229 10 3 1147 1778 143 125 3 chr5 73673604 73673825 -78863434 + ORR1B1 LTR MaLR 1 245 -149 3 1147 279 0 0 0 chr5 73673825 73673856 -78863403 + (CCTG)n Simple_repeat Simple_repeat 4 34 0 3 1147 1778 143 125 3 chr5 73673856 73673978 -78863281 + ORR1B1 LTR MaLR 246 386 -8 3 1147 798 268 90 18 chr5 73674014 73674291 -78862968 - MER2 DNA MER2_type -39 306 10 3 1147 618 176 0 0 chr5 73674341 73674460 -78862799 + GA-rich Low_complexity Low_complexity 4 122 0 3 1147 194 91 30 0 chr5 73674685 73674718 -78862541 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 3 1147 364 302 79 104 chr5 73674853 73675093 -78862166 + MLT1F LTR MaLR 32 265 -202 3 1147 1904 270 85 28 chr5 73675118 73675799 -78861460 + Lx9 LINE L1 6801 7520 -124 3 1147 322 238 36 45 chr5 73675867 73675977 -78861282 + RMER1C Other Other 1234 1342 0 3 1147 465 268 43 13 chr5 73676142 73676337 -78860922 + MLT1F LTR MaLR 307 483 -65 3 1147 638 146 55 0 chr5 73676337 73676447 -78860812 - ORR1D1 LTR MaLR -2 372 257 3 1147 302 0 26 0 chr5 73676447 73676485 -78860774 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1147 504 135 0 22 chr5 73676491 73676582 -78860677 - ORR1D1 LTR MaLR -216 158 70 3 1147 831 157 0 22 chr5 73676724 73676861 -78860398 - B1_Mur3 SINE Alu -15 134 1 3 1147 22 0 0 0 chr5 73676870 73676892 -78860367 + AT_rich Low_complexity Low_complexity 1 22 0 3 1147 476 281 29 7 chr5 73676946 73677082 -78860177 + RSINE1 SINE B4 5 143 -22 3 1147 441 0 0 0 chr5 73677082 73677131 -78860128 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1147 237 323 146 41 chr5 73677169 73677463 -78859796 - L2 LINE L2 -1251 2168 1844 3 1147 731 244 75 2 chr5 73677490 73677680 -78859579 + B3 SINE B2 5 210 -6 3 1147 447 189 354 19 chr5 73678480 73678641 -78858618 - B3A SINE B2 0 216 2 3 1147 366 311 8 0 chr5 73678641 73678763 -78858496 - ID_B1 SINE B4 0 224 102 3 1147 471 328 0 0 chr5 73678988 73679113 -78858146 + ID_B1 SINE B4 99 223 -1 3 1147 2009 111 9 0 chr5 73679608 73679923 -78857336 + ORR1A3 LTR MaLR 1 318 -8 3 1147 394 117 4 0 chr5 73680726 73680798 -78856461 + RMER17C LTR ERVK 4 56 -354 3 1147 254 73 0 24 chr5 73681456 73681498 -78855761 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 3 1147 351 0 0 0 chr5 73681779 73681818 -78855441 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1147 1057 96 7 0 chr5 73681926 73682072 -78855187 - B1_Mus1 SINE Alu 0 148 2 3 1147 424 272 26 0 chr5 73682079 73682193 -78855066 + RSINE1 SINE B4 43 159 -6 3 1147 407 301 136 23 chr5 73682350 73682527 -78854732 + B3A SINE B2 2 198 0 3 1147 231 114 0 0 chr5 73684521 73684556 -78852703 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1147 606 184 191 48 chr5 73685225 73685413 -78851846 + B3 SINE B2 1 215 -1 3 1147 1435 76 5 5 chr5 73685591 73685777 -78851482 - B2_Mm2 SINE B2 -9 186 1 3 1147 754 117 61 30 chr5 73686337 73686469 -78850790 - B1_Mur3 SINE Alu -11 138 3 3 1147 363 237 24 12 chr5 73686475 73686636 -78850623 - B4A SINE B4 -86 206 2 3 1147 834 94 0 16 chr5 73687081 73687210 -78850049 - B1_Mus2 SINE Alu -20 127 1 3 1147 707 261 80 5 chr5 73687234 73687434 -78849825 - B3 SINE B2 0 216 2 3 1147 344 286 127 0 chr5 73687477 73687603 -78849656 + RSINE1 SINE B4 2 143 -22 3 1147 263 246 49 0 chr5 73687828 73687889 -78849370 + B1F2 SINE Alu 19 82 -67 3 1147 29 0 0 0 chr5 73688260 73688289 -78848970 + AT_rich Low_complexity Low_complexity 1 29 0 3 1147 221 229 42 0 chr5 73688310 73688358 -78848901 - B1F1 SINE Alu -28 121 72 3 1147 271 305 221 8 chr5 73688747 73688982 -78848277 - Lx8 LINE L1 -848 6625 6341 3 1147 251 296 152 18 chr5 73689228 73689393 -78847866 + MIR SINE MIR 1 187 -75 4 1147 207 340 66 42 chr5 73689626 73689792 -78847467 + MIR3 SINE MIR 36 205 -3 4 1147 364 295 117 30 chr5 73690323 73690554 -78846705 + MER58B DNA MER1_type 1 251 -90 4 1147 1522 72 0 15 chr5 73690577 73690775 -78846484 - B2_Mm2 SINE B2 0 195 1 4 1147 580 246 28 0 chr5 73690975 73691117 -78846142 - MER68 LTR ERVL -272 291 146 4 1147 768 223 157 16 chr5 73692127 73692318 -78844941 + ID_B1 SINE B4 6 223 -1 4 1147 449 178 22 0 chr5 73692395 73692485 -78844774 + B3A SINE B2 2 93 -105 4 1147 363 271 12 0 chr5 73692767 73692852 -78844407 + B3 SINE B2 2 87 -129 4 1147 1553 151 108 10 chr5 73692868 73693175 -78844084 - ORR1B1 LTR MaLR -57 337 1 4 1147 350 353 19 25 chr5 73693804 73693964 -78843295 + RSINE1 SINE B4 7 165 0 4 1147 23 0 0 0 chr5 73694101 73694124 -78843135 + AT_rich Low_complexity Low_complexity 1 23 0 4 1147 21 0 0 0 chr5 73694976 73694997 -78842262 + AT_rich Low_complexity Low_complexity 1 21 0 4 1147 237 231 32 129 chr5 73696903 73697027 -78840232 + MT2B LTR ERVL 153 264 -337 4 1147 601 180 78 8 chr5 73696927 73697056 -78840203 + B1_Mur2 SINE Alu 6 143 -6 4 1147 320 298 41 3 chr5 73700213 73700359 -78836900 - MIR3 SINE MIR -23 185 37 4 1147 453 292 0 32 chr5 73701801 73701925 -78835334 + RSINE1 SINE B4 3 122 -43 4 1147 871 166 0 7 chr5 73701968 73702114 -78835145 - B1_Mur4 SINE Alu 0 150 6 4 1147 392 275 31 123 chr5 73701971 73702133 -78835126 - B4 SINE B4 -69 223 77 4 1147 343 276 34 95 chr5 73702014 73702162 -78835097 - MT2B LTR ERVL -344 257 119 4 1147 21 57 0 0 chr5 73702485 73702520 -78834739 + AT_rich Low_complexity Low_complexity 1 35 0 4 1147 1745 16 0 0 chr5 73703102 73703294 -78833965 - B2_Mm1t SINE B2 0 193 2 4 1147 739 128 6 96 chr5 73703637 73703793 -78833466 + B1_Mur4 SINE Alu 3 144 -6 4 1147 234 211 270 50 chr5 73704412 73704512 -78832747 + MIRb SINE MIR 33 154 -114 4 1147 1168 79 67 11 chr5 73705314 73705330 -78831929 - B2_Mm2 SINE B2 -4 191 176 4 1147 243 0 0 0 chr5 73705330 73705357 -78831902 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4 1147 1168 79 67 11 chr5 73705357 73705520 -78831739 - B2_Mm2 SINE B2 -20 175 2 4 1147 410 331 135 16 chr5 73705669 73706043 -78831216 - MLT1F-int LTR MaLR -184 1305 776 4 1147 3086 42 44 0 chr5 73706198 73706581 -78830678 - MTB LTR MaLR 0 400 1 4 1147 794 224 50 20 chr5 73706599 73706799 -78830460 - B3 SINE B2 0 216 11 4 1147 345 288 0 0 chr5 73706862 73706942 -78830317 - ID4 SINE ID -2 81 2 4 1147 890 156 37 16 chr5 73707716 73707905 -78829354 - B2_Mm2 SINE B2 -1 194 2 4 1147 636 191 8 8 chr5 73708322 73708449 -78828810 + B3 SINE B2 1 127 -89 4 1147 610 233 74 0 chr5 73708900 73709076 -78828183 + ID_B1 SINE B4 2 190 -34 4 1147 189 0 0 0 chr5 73709586 73709607 -78827652 + (TTA)n Simple_repeat Simple_repeat 1 21 0 4 1147 296 300 0 24 chr5 73709725 73709807 -78827452 + polypyrimidine Low_complexity Low_complexity 1 80 0 4 1147 632 186 14 41 chr5 73709807 73709953 -78827306 - B1_Mur2 SINE Alu 0 149 8 4 1147 417 70 0 0 chr5 73710151 73710208 -78827051 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1147 678 252 103 0 chr5 73710774 73711008 -78826251 + Tigger5 DNA MER2_type 2119 2376 -30 4 1147 2405 154 125 125 chr5 73711386 73711565 -78825694 - RMER6C LTR ERVK 0 690 520 4 1147 216 0 0 0 chr5 73711565 73711589 -78825670 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 4 1147 2405 154 125 125 chr5 73711589 73711641 -78825618 - RMER6C LTR ERVK -171 519 511 4 1147 1065 115 0 0 chr5 73711641 73711789 -78825470 - B1_Mus1 SINE Alu 0 148 1 4 1147 2405 154 125 125 chr5 73711789 73712042 -78825217 - RMER6C LTR ERVK -180 510 212 4 1147 1432 51 23 0 chr5 73712042 73712217 -78825042 - B2_Mm2 SINE B2 -14 181 3 4 1147 2405 154 125 125 chr5 73712217 73712420 -78824839 - RMER6C LTR ERVK -479 211 1 4 1147 1984 187 43 160 chr5 73712790 73713370 -78823889 - RLTR18B LTR ERVK 0 512 1 4 1147 491 201 8 0 chr5 73713659 73713793 -78823466 + (CA)n Simple_repeat Simple_repeat 1 135 0 4 1147 1327 45 95 6 chr5 73714020 73714199 -78823060 - B2_Mm2 SINE B2 0 195 1 4 1147 293 64 43 0 chr5 73715141 73715188 -78822071 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 4 1147 645 251 59 25 chr5 73716262 73716466 -78820793 + ID_B1 SINE B4 14 224 0 4 1147 191 197 114 38 chr5 73716578 73716657 -78820602 - MIRb SINE MIR -81 187 103 4 1147 1074 117 0 0 chr5 73716765 73717005 -78820254 + (TG)n Simple_repeat Simple_repeat 1 240 0 4 1147 206 121 0 0 chr5 73717005 73717038 -78820221 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1147 256 174 0 0 chr5 73717038 73717084 -78820175 - MER103 DNA DNA -75 91 46 4 1147 722 183 42 14 chr5 73717324 73717468 -78819791 - B1_Mur2 SINE Alu -1 148 1 4 1147 327 368 96 45 chr5 73718286 73718599 -78818660 + MER2 DNA MER2_type 11 339 -6 4 1147 689 70 10 0 chr5 73719285 73719385 -78817874 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 4 1147 691 226 23 0 chr5 73719385 73719518 -78817741 - B1_Mur1 SINE Alu -13 136 1 4 1147 627 342 127 11 chr5 73719563 73719918 -78817341 + MLT1D LTR MaLR 7 402 -103 4 1147 849 240 124 0 chr5 73719915 73720173 -78817086 + ORR1E LTR MaLR 59 365 -14 4 1147 254 270 85 103 chr5 73720617 73720782 -78816477 + RSINE1 SINE B4 3 164 -1 4 1147 905 163 14 0 chr5 73720905 73721052 -78816207 - B1_Mur2 SINE Alu 0 149 1 4 1147 1434 79 5 5 chr5 73721201 73721392 -78815867 - B2_Mm1t SINE B2 -1 192 2 4 1147 410 114 14 0 chr5 73721493 73721563 -78815696 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1147 831 171 7 0 chr5 73721575 73721715 -78815544 - B1_Mus1 SINE Alu -7 141 1 4 1147 328 317 52 91 chr5 73721716 73722080 -78815179 - L1MC4 LINE L1 -4 8038 7689 4 1147 445 174 12 22 chr5 73723475 73723574 -78813685 + PB1D10 SINE Alu 22 126 -1 4 1147 187 153 0 48 chr5 73724411 73724473 -78812786 + T-rich Low_complexity Low_complexity 4 62 0 4 1147 758 260 31 61 chr5 73724473 73724702 -78812557 - B4A SINE B4 -68 224 3 4 1147 522 319 40 35 chr5 73724702 73724736 -78812523 + Tigger5 DNA MER2_type 17 54 -2352 4 1147 1299 156 261 79 chr5 73724736 73724818 -78812441 + MTC LTR MaLR 1 80 -341 4 1147 836 144 8 0 chr5 73724818 73724950 -78812309 + B1_Mur3 SINE Alu 1 133 -16 4 1147 528 59 0 0 chr5 73724950 73725018 -78812241 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1147 1299 156 261 79 chr5 73725018 73725290 -78811969 + MTC LTR MaLR 81 420 -1 4 1147 522 319 40 35 chr5 73725290 73725444 -78811815 + Tigger5 DNA MER2_type 55 206 -2200 4 1147 295 338 0 0 chr5 73725524 73725601 -78811658 + Tigger5 DNA MER2_type 2330 2406 0 4 1147 459 0 0 0 chr5 73725668 73725719 -78811540 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1147 351 0 0 0 chr5 73725719 73725757 -78811502 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1147 1106 249 4 0 chr5 73726434 73726655 -78810604 + B4A SINE B4 9 230 -62 4 1147 752 228 0 36 chr5 73726655 73726823 -78810436 + RSINE1 SINE B4 3 164 -1 4 1147 227 246 18 0 chr5 73726825 73726882 -78810377 + (TAAA)n Simple_repeat Simple_repeat 1 58 0 4 1147 620 186 29 0 chr5 73727396 73727498 -78809761 - RSINE1 SINE B4 -39 126 22 4 1147 406 253 50 40 chr5 73727544 73727643 -78809616 - B3A SINE B2 -47 151 52 4 1147 189 333 41 10 chr5 73728196 73728293 -78808966 - L2 LINE L2 -1020 2399 2300 4 1147 538 191 84 18 chr5 73728715 73728843 -78808416 - B1_Mur2 SINE Alu -11 138 2 4 1147 22 0 0 0 chr5 73729113 73729135 -78808124 + AT_rich Low_complexity Low_complexity 1 22 0 4 1147 378 61 0 0 chr5 73729640 73729689 -78807570 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1147 208 91 61 0 chr5 73729784 73729817 -78807442 + CT-rich Low_complexity Low_complexity 1 35 0 4 1147 252 86 0 0 chr5 73730232 73730267 -78806992 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1147 229 265 20 93 chr5 73730340 73730490 -78806769 + RLTR22_Mur LTR ERVK 1307 1445 -403 4 1147 340 311 15 0 chr5 73730494 73730629 -78806630 + (TG)n Simple_repeat Simple_repeat 2 138 0 4 1147 830 197 48 21 chr5 73730629 73730816 -78806443 + RMER5 LTR ERV1 1 192 -342 4 1147 845 170 0 84 chr5 73730823 73730990 -78806269 - B3 SINE B2 -63 153 1 4 1147 333 291 104 46 chr5 73731322 73731495 -78805764 + B2_Mm2 SINE B2 9 191 -4 4 1147 1188 54 0 26 chr5 73732911 73733062 -78804197 - B1_Mus1 SINE Alu 0 148 2 4 1147 773 211 8 0 chr5 73733062 73733195 -78804064 + B1_Mur2 SINE Alu 11 144 -5 4 1147 404 216 70 25 chr5 73733132 73733331 -78803928 - RMER17D LTR ERVK -374 515 308 4 1147 267 226 86 97 chr5 73734913 73735006 -78802253 - RSINE1 SINE B4 -14 151 78 4 1147 900 276 162 10 chr5 73736336 73736750 -78800509 - L1MC LINE L1 -1989 5796 5320 4 1147 1107 47 0 0 chr5 73736891 73737020 -78800239 + B1_Mm SINE Alu 1 129 -18 4 1147 1417 73 0 6 chr5 73737026 73737206 -78800053 - B2_Mm2 SINE B2 -14 181 3 4 1147 450 257 44 0 chr5 73737223 73737336 -78799923 - PB1D9 SINE Alu -2 118 1 4 1147 452 256 25 25 chr5 73737347 73737507 -78799752 - L1MC LINE L1 -880 5266 5107 4 1147 218 156 89 25 chr5 73737701 73737780 -78799479 + GA-rich Low_complexity Low_complexity 4 87 0 4 1147 648 250 87 38 chr5 73737781 73737964 -78799295 + B3A SINE B2 1 192 -6 4 1147 399 268 0 40 chr5 73738256 73738357 -78798902 + PB1D10 SINE Alu 21 117 0 4 1147 858 235 6 6 chr5 73738438 73738618 -78798641 + B3A SINE B2 3 182 -16 4 1147 303 113 0 0 chr5 73738655 73738708 -78798551 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1147 408 277 118 54 chr5 73738736 73738948 -78798311 + MIR SINE MIR 20 236 -26 5 1147 1123 62 0 0 chr5 73739005 73739149 -78798110 + B1_Mm SINE Alu 1 144 -3 5 1147 24 0 0 0 chr5 73739149 73739173 -78798086 + AT_rich Low_complexity Low_complexity 1 24 0 5 1147 2048 107 12 51 chr5 73739612 73739947 -78797312 - RLTRETN_Mm LTR ERVK 0 322 1 5 1147 186 227 0 0 chr5 73740144 73740188 -78797071 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1147 348 243 86 20 chr5 73740224 73740375 -78796884 - L1MA4 LINE L1 -371 5929 5769 5 1147 532 256 53 15 chr5 73740381 73740512 -78796747 - ID_B1 SINE B4 -8 216 81 5 1147 549 294 83 45 chr5 73740512 73740800 -78796459 - L1MA4 LINE L1 -503 5788 5490 5 1147 453 278 0 0 chr5 73741676 73741766 -78795493 + PB1D10 SINE Alu 13 102 -15 5 1147 576 29 0 0 chr5 73741766 73741836 -78795423 + (CAAGA)n Simple_repeat Simple_repeat 1 70 0 5 1147 1558 144 197 10 chr5 73742391 73742700 -78794559 + ORR1B2 LTR MaLR 1 367 0 5 1147 894 291 37 108 chr5 73742920 73743355 -78793904 - RLTR18 LTR ERVK -212 404 1 5 1147 1179 58 17 12 chr5 73743437 73743610 -78793649 + (TCCC)n Simple_repeat Simple_repeat 4 177 0 5 1147 389 324 92 45 chr5 73744351 73744686 -78792573 - MLT1A1 LTR MaLR 0 408 5 5 1147 620 328 55 0 chr5 73745000 73745201 -78792058 - ID_B1 SINE B4 0 224 13 5 1147 258 305 1 0 chr5 73746054 73746143 -78791116 + ID2 SINE ID 4 93 -59 5 1147 180 0 0 0 chr5 73746156 73746176 -78791083 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5 1147 258 351 64 38 chr5 73746242 73746399 -78790860 + Charlie7 DNA MER1_type 149 309 -2303 5 1147 803 303 57 38 chr5 73746419 73746786 -78790473 + Charlie7 DNA MER1_type 348 721 -1891 5 1147 510 17 0 0 chr5 73746955 73747014 -78790245 + (TG)n Simple_repeat Simple_repeat 1 59 0 5 1147 984 54 131 0 chr5 73747112 73747242 -78790017 + B1_Mm SINE Alu 1 147 0 5 1147 212 0 0 35 chr5 73747259 73747288 -78789971 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1147 189 0 0 0 chr5 73747291 73747312 -78789947 + (CAA)n Simple_repeat Simple_repeat 2 22 0 5 1147 338 272 40 89 chr5 73747324 73747519 -78789740 + RSINE1 SINE B4 75 291 -1 5 1147 271 121 35 0 chr5 73747519 73747577 -78789682 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1147 294 234 64 105 chr5 73747616 73747633 -78789626 + L1MA5 LINE L1 6132 6148 -152 5 1147 1238 98 66 0 chr5 73747633 73747816 -78789443 + B2_Mm2 SINE B2 1 195 0 5 1147 294 234 64 105 chr5 73747816 73747873 -78789386 + L1MA5 LINE L1 6149 6199 -101 5 1147 1175 49 0 0 chr5 73747873 73748017 -78789242 + B1_Mus1 SINE Alu 1 144 -4 5 1147 462 36 0 0 chr5 73748026 73748082 -78789177 + (GGA)n Simple_repeat Simple_repeat 3 58 0 5 1147 294 234 64 105 chr5 73748082 73748168 -78789091 + L1MA5 LINE L1 6207 6296 -4 5 1147 606 282 84 11 chr5 73748375 73748565 -78788694 + B3 SINE B2 1 204 -12 5 1147 225 0 0 0 chr5 73748861 73748886 -78788373 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 5 1147 306 282 13 0 chr5 73749385 73749463 -78787796 - MER53 DNA hAT -112 81 3 5 1147 293 342 34 26 chr5 73749818 73749935 -78787324 + MER20 DNA MER1_type 4 121 -98 5 1147 248 270 16 16 chr5 73750128 73750192 -78787067 - ID2 SINE ID -11 72 9 5 1147 22 0 0 0 chr5 73751944 73751966 -78785293 + AT_rich Low_complexity Low_complexity 1 22 0 5 1147 889 271 26 167 chr5 73751980 73752436 -78784823 - Lx8 LINE L1 -2 7471 7080 5 1147 822 200 71 48 chr5 73752451 73752661 -78784598 + B3 SINE B2 1 215 -1 5 1147 434 266 47 8 chr5 73753338 73753467 -78783792 + RMER20A LTR ERVK 238 371 -145 5 1147 465 295 32 13 chr5 73753695 73753853 -78783406 - RSINE1 SINE B4 -4 161 1 5 1147 318 283 10 20 chr5 73755007 73755108 -78782151 + MLT1A1 LTR MaLR 302 401 -7 5 1147 227 286 0 87 chr5 73756031 73756100 -78781159 - LTR33 LTR ERVL -433 82 20 5 1147 294 310 0 73 chr5 73756874 73757010 -78780249 - MER103 DNA DNA -19 147 22 5 1147 1219 41 0 7 chr5 73757109 73757255 -78780004 + B1_Mm SINE Alu 3 147 0 5 1147 294 95 0 0 chr5 73757255 73757297 -78779962 + (A)n Simple_repeat Simple_repeat 1 42 0 5 1147 497 217 24 55 chr5 73757455 73757582 -78779677 + MTD LTR MaLR 1 123 -296 5 1147 1045 189 6 0 chr5 73757592 73757767 -78779492 + URR1B DNA MER1_type 49 224 -1 5 1147 1209 226 20 8 chr5 73757771 73758016 -78779243 + MTD LTR MaLR 107 354 -65 5 1147 304 206 54 89 chr5 73758426 73758538 -78778721 + ORR1D1 LTR MaLR 266 373 -1 5 1147 433 301 9 0 chr5 73758655 73758768 -78778491 - ID_B1 SINE B4 -2 222 109 5 1147 275 357 54 0 chr5 73758768 73758784 -78778475 - B1F1 SINE Alu -2 147 12 5 1147 1531 199 10 7 chr5 73758821 73759115 -78778144 - RLTR14 LTR ERV1 -85 297 3 5 1147 1653 165 106 56 chr5 73759255 73759614 -78777645 + ORR1C1 LTR MaLR 2 378 0 5 1147 492 379 57 35 chr5 73759743 73760060 -78777199 - ORR1E LTR MaLR -4 355 32 5 1147 267 342 8 26 chr5 73760247 73760364 -78776895 - L1M5 LINE L1 -511 5683 5569 5 1147 1626 204 155 40 chr5 73760876 73761380 -78775879 - RMER4B LTR ERVK -6 579 18 5 1147 810 70 0 0 chr5 73761380 73761494 -78775765 + (TCCC)n Simple_repeat Simple_repeat 4 117 0 5 1147 229 185 37 0 chr5 73761684 73761738 -78775521 + T-rich Low_complexity Low_complexity 3 58 0 5 1147 536 208 28 9 chr5 73761745 73761852 -78775407 + B1_Mur1 SINE Alu 24 132 -17 5 1147 967 190 62 214 chr5 73761864 73762313 -78774946 - ORR1C2 LTR MaLR -1 383 3 5 1147 941 234 9 53 chr5 73762375 73762564 -78774695 + B3 SINE B2 1 181 -35 5 1147 1448 234 69 3 chr5 73762564 73762911 -78774348 + ORR1D1 LTR MaLR 5 374 0 5 1147 941 234 9 53 chr5 73762911 73762947 -78774312 + B3 SINE B2 182 216 0 5 1147 333 0 0 0 chr5 73763933 73763970 -78773289 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1147 391 286 31 0 chr5 73764002 73764100 -78773159 - RSINE1 SINE B4 -62 103 3 5 1147 710 233 170 0 chr5 73764100 73764292 -78772967 - B4A SINE B4 -58 234 8 5 1147 432 0 0 0 chr5 73764951 73764999 -78772260 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1147 275 229 107 12 chr5 73765274 73765358 -78771901 + RMER5 LTR ERV1 45 136 -398 5 1147 511 237 41 106 chr5 73765494 73765664 -78771595 - B3A SINE B2 -33 165 7 5 1147 270 256 0 82 chr5 73767023 73767108 -78770151 + ID4 SINE ID 2 79 -4 5 1147 661 174 86 176 chr5 73767719 73767823 -78769436 - ID_B1 SINE B4 -1 223 158 5 1147 312 250 0 68 chr5 73767823 73767896 -78769363 - ID4 SINE ID -13 70 3 5 1147 661 174 86 176 chr5 73767896 73768035 -78769224 - ID_B1 SINE B4 -67 157 2 5 1147 260 185 56 0 chr5 73768538 73768592 -78768667 - L1MB7 LINE L1 -11 6173 6117 5 1147 350 244 0 82 chr5 73768611 73768696 -78768563 - B1F SINE Alu -5 144 67 5 1147 447 68 0 0 chr5 73768712 73768771 -78768488 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1147 444 37 0 0 chr5 73769275 73769329 -78767930 + (TG)n Simple_repeat Simple_repeat 2 55 0 5 1147 254 340 61 41 chr5 73770096 73770124 -78767135 - L2a LINE L2 -2 3424 3400 5 1147 1215 199 0 0 chr5 73770124 73770335 -78766924 - B3 SINE B2 -5 211 1 5 1147 254 340 61 41 chr5 73770335 73770453 -78766806 - L2a LINE L2 -27 3399 3275 5 1147 315 247 39 0 chr5 73770870 73770947 -78766312 - PB1D10 SINE Alu -5 112 33 5 1147 212 358 173 5 chr5 73771127 73771335 -78765924 - MIR SINE MIR -7 261 19 5 1147 357 309 233 23 chr5 73772776 73772984 -78764275 - B4A SINE B4 -39 253 2 5 1147 645 147 0 0 chr5 73773111 73773220 -78764039 + (GA)n Simple_repeat Simple_repeat 2 110 0 5 1147 909 179 0 7 chr5 73773929 73774070 -78763189 + B1_Mur3 SINE Alu 3 142 -7 5 1147 585 0 0 0 chr5 73774310 73774375 -78762884 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1147 329 337 92 0 chr5 73774423 73774521 -78762738 + B3A SINE B2 64 170 -28 5 1147 478 309 128 41 chr5 73774538 73774858 -78762401 - Arthur1 DNA Tip100 -285 3662 3315 5 1147 204 40 0 0 chr5 73774865 73774890 -78762369 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 5 1147 286 274 291 0 chr5 73774911 73775028 -78762231 - RSINE1 SINE B4 -1 164 14 5 1147 805 257 32 44 chr5 73775025 73775277 -78761982 - Arthur1 DNA Tip100 -660 3287 3039 5 1147 477 250 0 0 chr5 73775501 73775597 -78761662 - Arthur1 DNA Tip100 -3781 166 71 5 1147 1245 161 34 0 chr5 73775930 73776135 -78761124 + URR1B DNA MER1_type 11 222 -3 5 1147 873 45 2 13 chr5 73776147 73776276 -78760983 - B1_Mus2 SINE Alu -12 137 12 5 1147 410 176 87 19 chr5 73776183 73776287 -78760972 - B4A SINE B4 -98 194 84 5 1147 374 266 26 26 chr5 73776439 73776555 -78760704 - PB1D10 SINE Alu -1 116 1 5 1147 21 0 0 0 chr5 73776722 73776743 -78760516 + AT_rich Low_complexity Low_complexity 1 21 0 5 1147 236 53 26 0 chr5 73776860 73776898 -78760361 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1147 3617 13 2 0 chr5 73777253 73777648 -78759611 - MTA_Mm LTR MaLR 0 396 1 5 1147 243 146 0 0 chr5 73777980 73778021 -78759238 + (CATG)n Simple_repeat Simple_repeat 3 43 0 5 1147 482 244 101 24 chr5 73778131 73778180 -78759079 - B4A SINE B4 0 292 238 5 1147 538 284 0 37 chr5 73778180 73778341 -78758918 - RSINE1 SINE B4 -8 157 3 5 1147 482 244 101 24 chr5 73778341 73778459 -78758800 - B4A SINE B4 -55 237 112 5 1147 1016 158 203 65 chr5 73778493 73778730 -78758529 + ORR1C2 LTR MaLR 38 317 -67 5 1147 465 19 0 0 chr5 73778730 73778784 -78758475 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 5 1147 1016 167 131 41 chr5 73778784 73778837 -78758422 + ORR1C2 LTR MaLR 318 378 -6 5 1147 346 260 136 29 chr5 73780350 73780453 -78756806 - B3A SINE B2 -5 211 98 5 1147 313 329 30 0 chr5 73780885 73781049 -78756210 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 5 1147 410 240 206 4 chr5 73781411 73781568 -78755691 - B3A SINE B2 0 216 34 5 1147 553 246 102 0 chr5 73781629 73781747 -78755512 - B3 SINE B2 -86 130 1 5 1147 477 71 0 0 chr5 73781759 73781829 -78755430 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1147 705 82 0 0 chr5 73782459 73782556 -78754703 + (CA)n Simple_repeat Simple_repeat 2 98 0 5 1147 550 271 47 0 chr5 73782560 73782689 -78754570 - B1F SINE Alu -7 142 8 6 1147 535 170 53 60 chr5 73784104 73784260 -78752999 + B1F1 SINE Alu 6 142 -7 6 1147 260 240 73 83 chr5 73784164 73784273 -78752986 + B4 SINE B4 126 233 -59 6 1147 425 279 27 0 chr5 73784780 73784891 -78752368 - RSINE1 SINE B4 -41 124 11 6 1147 740 309 15 52 chr5 73785006 73785048 -78752211 - B4A SINE B4 -29 263 228 6 1147 831 193 0 20 chr5 73785048 73785201 -78752058 - B1_Mur4 SINE Alu 0 150 1 6 1147 740 309 15 52 chr5 73785201 73785428 -78751831 - B4A SINE B4 -65 227 4 6 1147 1052 124 0 6 chr5 73785813 73785992 -78751267 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 6 1147 324 278 101 43 chr5 73785992 73786122 -78751137 + HAL1-3A_ME LINE L1 2292 2430 -428 6 1147 1218 117 0 0 chr5 73786122 73786302 -78750957 + (GGAA)n Simple_repeat Simple_repeat 1 184 -123 6 1147 1218 117 0 0 chr5 73786310 73786429 -78750830 + (GGAA)n Simple_repeat Simple_repeat 185 307 0 6 1147 995 234 161 25 chr5 73786431 73786711 -78750548 - MTEa LTR MaLR -55 324 7 6 1147 2311 123 12 0 chr5 73786814 73787148 -78750111 + ORR1A1 LTR MaLR 1 338 -8 6 1147 3301 46 5 0 chr5 73787422 73787816 -78749443 - MTA_Mm LTR MaLR 0 396 1 6 1147 1224 89 0 0 chr5 73788253 73788433 -78748826 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1147 185 200 39 20 chr5 73788695 73788746 -78748513 + L3 LINE CR1 2831 2882 -1607 6 1147 204 200 0 0 chr5 73788973 73789008 -78748251 + C-rich Low_complexity Low_complexity 5 39 0 6 1147 225 322 45 11 chr5 73789428 73789516 -78747743 - ORR1E LTR MaLR -1 358 268 6 1147 747 0 0 0 chr5 73789748 73789831 -78747428 + (TTCCC)n Simple_repeat Simple_repeat 4 86 0 6 1147 238 348 45 0 chr5 73789868 73789957 -78747302 - ID_B1 SINE B4 -131 93 1 6 1147 594 195 0 0 chr5 73790207 73790467 -78746792 + GA-rich Low_complexity Low_complexity 1 260 0 6 1147 765 145 0 0 chr5 73790468 73790647 -78746612 + (GGA)n Simple_repeat Simple_repeat 1 179 0 6 1147 450 171 0 0 chr5 73790651 73790774 -78746485 + GA-rich Low_complexity Low_complexity 1 123 0 6 1147 1297 228 26 80 chr5 73792087 73792231 -78745028 + MTEb LTR MaLR 13 149 -230 6 1147 1323 61 39 6 chr5 73792231 73792411 -78744848 - B2_Mm1t SINE B2 -6 187 2 6 1147 1297 228 26 80 chr5 73792411 73792618 -78744641 + MTEb LTR MaLR 150 345 -34 6 1147 1001 303 110 37 chr5 73792837 73793478 -78743781 - L1MB8 LINE L1 -108 6070 5387 6 1147 303 28 0 0 chr5 73793479 73793515 -78743744 + (TGG)n Simple_repeat Simple_repeat 1 36 0 6 1148 359 301 96 0 chr5 73793568 73793579 -78743680 - B1_Mur2 SINE Alu 0 149 5 6 1148 600 264 8 0 chr5 73793579 73793700 -78743559 - ID_B1 SINE B4 -17 207 86 6 1148 1655 31 0 15 chr5 73793861 73794057 -78743202 - B2_Mm1t SINE B2 0 193 1 6 1148 2029 88 8 131 chr5 73794084 73794450 -78742809 - ORR1A4 LTR MaLR -8 321 1 6 1148 384 274 185 37 chr5 73794452 73794668 -78742591 - L1MB7 LINE L1 -142 6042 5795 6 1148 21 0 0 0 chr5 73795253 73795274 -78741985 + AT_rich Low_complexity Low_complexity 1 21 0 6 1148 788 124 41 0 chr5 73795287 73795456 -78741803 + GA-rich Low_complexity Low_complexity 1 176 0 6 1148 590 262 16 8 chr5 73795486 73795613 -78741646 - RSINE1 SINE B4 -35 130 3 6 1148 359 284 31 54 chr5 73795667 73795797 -78741462 - PB1 SINE Alu 0 127 1 6 1148 337 341 16 58 chr5 73795798 73795974 -78741285 - L1MB7 LINE L1 -980 5166 5003 6 1148 1060 201 174 25 chr5 73795974 73796296 -78740963 - ORR1D2 LTR MaLR 0 370 1 6 1148 337 341 16 58 chr5 73796296 73796427 -78740832 - L1MB7 LINE L1 -1144 5002 4873 6 1148 1114 84 39 20 chr5 73796643 73796824 -78740435 - B1_Mm SINE Alu 0 311 8 6 1148 216 0 0 0 chr5 73796917 73796941 -78740318 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1148 434 292 33 16 chr5 73797069 73797191 -78740068 - ID_B1 SINE B4 -80 144 21 6 1148 414 0 0 0 chr5 73799118 73799164 -78738095 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1148 622 84 0 0 chr5 73799166 73799249 -78738010 - B2_Mm2 SINE B2 -112 83 1 6 1148 1224 111 26 16 chr5 73799664 73799857 -78737402 - B2_Mm2 SINE B2 0 195 1 6 1148 182 62 31 0 chr5 73800180 73800212 -78737047 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 6 1148 449 329 23 81 chr5 73800296 73800468 -78736791 + RSINE1 SINE B4 3 164 -1 6 1148 534 31 0 0 chr5 73800566 73800630 -78736629 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 6 1148 312 27 0 0 chr5 73800630 73800667 -78736592 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1148 368 320 62 25 chr5 73800673 73800833 -78736426 + L1MC LINE L1 5510 5675 -2207 6 1148 452 281 9 17 chr5 73801526 73801642 -78735617 - MTE2b LTR MaLR -1 378 264 6 1148 259 308 39 0 chr5 73801659 73801737 -78735522 - MTE2b LTR MaLR -298 81 1 6 1148 760 182 226 6 chr5 73801821 73801998 -78735261 + B3 SINE B2 1 216 0 6 1148 1718 289 92 19 chr5 73802295 73802962 -78734297 + L1MB7 LINE L1 5454 6168 -16 6 1148 28 29 0 0 chr5 73803443 73803478 -78733781 + AT_rich Low_complexity Low_complexity 1 35 0 6 1148 1510 73 16 0 chr5 73803564 73803755 -78733504 - B2_Mm2 SINE B2 0 195 2 6 1148 999 82 208 0 chr5 73803774 73803933 -78733326 - B2_Mm2 SINE B2 -3 192 1 6 1148 521 221 0 10 chr5 73803938 73804034 -78733225 - RSINE1 SINE B4 -69 96 2 6 1148 1232 40 14 0 chr5 73804493 73804641 -78732618 + B1_Mur4 SINE Alu 1 150 0 6 1148 318 50 0 0 chr5 73804641 73804681 -78732578 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1148 251 225 12 112 chr5 73804698 73804778 -78732481 - ID4_ SINE ID -7 76 5 6 1148 258 283 36 10 chr5 73805603 73805706 -78731553 + MIR SINE MIR 63 166 -96 6 1148 218 289 51 38 chr5 73806658 73806737 -78730522 + MIR SINE MIR 162 241 -21 6 1148 354 98 0 0 chr5 73806819 73806870 -78730389 + (CATA)n Simple_repeat Simple_repeat 2 52 0 6 1148 286 200 40 13 chr5 73806886 73806962 -78730297 + (TA)n Simple_repeat Simple_repeat 1 78 0 6 1148 1061 235 0 5 chr5 73806963 73806988 -78730271 - B3 SINE B2 -2 214 190 6 1148 279 0 0 0 chr5 73806988 73807019 -78730240 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1148 1061 235 0 5 chr5 73807019 73807207 -78730052 - B3 SINE B2 -27 189 3 6 1148 27 0 0 0 chr5 73807207 73807234 -78730025 + AT_rich Low_complexity Low_complexity 1 27 0 6 1148 369 140 18 0 chr5 73807237 73807306 -78729953 - B2_Mm2 SINE B2 -78 120 46 6 1148 1211 98 22 39 chr5 73807343 73807524 -78729735 - B2_Mm1t SINE B2 -14 179 2 6 1148 476 212 27 114 chr5 73808083 73808122 -78729137 + MT2B LTR ERVL 129 154 -447 6 1148 1104 97 0 0 chr5 73808122 73808267 -78728992 + B1_Mus1 SINE Alu 4 148 0 6 1148 226 229 116 109 chr5 73808142 73808289 -78728970 - YREP_Mm Unknown Unknown -1518 294 147 6 1148 886 155 0 27 chr5 73808289 73808435 -78728824 + B1_Mur4 SINE Alu 2 143 -7 6 1148 339 25 0 0 chr5 73808435 73808475 -78728784 + (CATA)n Simple_repeat Simple_repeat 4 43 0 6 1148 688 244 0 0 chr5 73809774 73809909 -78727350 + B1_Mur2 SINE Alu 13 147 -2 6 1148 233 274 75 161 chr5 73809776 73809937 -78727322 + B4A SINE B4 100 246 -46 6 1148 82 90 0 0 chr5 73810021 73810243 -78727016 + AT_rich Low_complexity Low_complexity 1 222 0 6 1148 654 257 0 0 chr5 73810334 73810474 -78726785 - B1F2 SINE Alu 0 149 10 6 1148 249 349 35 101 chr5 73810474 73810498 -78726761 - B4 SINE B4 -60 227 75 6 1148 274 269 139 21 chr5 73810610 73810754 -78726505 - L2a LINE L2 0 3426 3266 6 1148 449 297 92 29 chr5 73810987 73811235 -78726024 - Lx7 LINE L1 -70 7403 7142 6 1148 254 268 111 42 chr5 73811599 73811743 -78725516 - Lx7 LINE L1 -19 7677 7524 6 1148 2293 249 69 60 chr5 73811735 73812490 -78724769 - Lx7 LINE L1 -361 7335 6574 6 1148 254 200 60 0 chr5 73812519 73812569 -78724690 - B3A SINE B2 -145 53 1 6 1148 398 272 0 0 chr5 73812595 73812676 -78724583 - ID4_ SINE ID -2 81 1 6 1148 678 140 0 0 chr5 73812867 73812981 -78724278 + (TCCC)n Simple_repeat Simple_repeat 1 114 0 6 1148 835 188 0 14 chr5 73812981 73813127 -78724132 - B1_Mur2 SINE Alu -5 144 1 6 1148 265 269 97 59 chr5 73813988 73814174 -78723085 - B2_Mm2 SINE B2 -1 194 2 6 1148 711 203 30 0 chr5 73814043 73814176 -78723083 - RSINE1 SINE B4 -28 137 1 6 1148 767 223 121 11 chr5 73814287 73814477 -78722782 - B3 SINE B2 -4 212 2 6 1148 426 235 93 24 chr5 73814681 73814886 -78722373 - RMER17C LTR ERVK -158 252 34 6 1148 1260 79 12 0 chr5 73814845 73815010 -78722249 - B2_Mm1t SINE B2 -23 170 4 6 1148 237 65 0 0 chr5 73815266 73815297 -78721962 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1148 366 23 0 0 chr5 73815303 73815346 -78721913 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1148 2648 172 87 12 chr5 73815639 73816134 -78721125 - RLTR12A LTR ERVK -4 564 33 6 1148 1131 291 75 63 chr5 73816143 73816473 -78720786 - L1MA4 LINE L1 -389 5911 5605 6 1148 1255 162 29 0 chr5 73816473 73816523 -78720736 - B3 SINE B2 0 216 163 6 1148 423 0 0 0 chr5 73816523 73816570 -78720689 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1148 1255 162 29 0 chr5 73816570 73816729 -78720530 - B3 SINE B2 -54 162 2 6 1148 1131 284 85 48 chr5 73816729 73817075 -78720184 - L1MA4 LINE L1 -696 5604 5160 6 1148 1461 63 21 5 chr5 73817107 73817299 -78719960 - B2_Mm2 SINE B2 0 195 1 6 1148 246 354 112 51 chr5 73818120 73818544 -78718715 - L2c LINE L2 0 3387 2931 6 1148 298 333 44 104 chr5 73818636 73818954 -78718305 - RMER12 LTR ERVK -263 1059 761 6 1148 246 220 0 0 chr5 73818959 73819018 -78718241 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1148 447 198 47 0 chr5 73819018 73819104 -78718155 - PB1D9 SINE Alu -10 110 21 6 1148 246 303 66 0 chr5 73819104 73819180 -78718079 - MTE2a LTR MaLR -10 369 289 6 1148 450 0 0 0 chr5 73819451 73819501 -78717758 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1148 450 0 0 0 chr5 73819501 73819550 -78717709 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1148 819 177 193 0 chr5 73820257 73820438 -78716821 + B3 SINE B2 1 216 0 7 1148 1037 202 51 5 chr5 73820778 73820992 -78716267 + ID_B1 SINE B4 1 224 0 7 1148 22 0 0 0 chr5 73821086 73821108 -78716151 + AT_rich Low_complexity Low_complexity 1 22 0 7 1148 981 127 14 0 chr5 73821110 73821252 -78716007 + B1_Mur4 SINE Alu 1 144 -6 7 1148 191 32 65 0 chr5 73821258 73821289 -78715970 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 7 1148 326 276 100 33 chr5 73821471 73821561 -78715698 + PB1D10 SINE Alu 2 97 -20 7 1148 532 280 42 48 chr5 73822144 73822370 -78714889 + B3A SINE B2 1 216 0 7 1148 652 329 68 20 chr5 73822377 73822628 -78714631 + MER2B DNA MER2_type 73 335 -1 7 1148 303 28 0 0 chr5 73822704 73822740 -78714519 + (GA)n Simple_repeat Simple_repeat 2 37 0 7 1148 328 274 61 53 chr5 73823442 73823573 -78713686 - MIR SINE MIR -58 204 73 7 1148 881 307 167 19 chr5 73823941 73824291 -78712968 + LTR33A LTR ERVL 30 439 -81 7 1148 1069 65 50 0 chr5 73824291 73824430 -78712829 - B1_Mus2 SINE Alu 0 147 2 7 1148 881 307 167 19 chr5 73824430 73824498 -78712761 + LTR33A LTR ERVL 440 509 -11 7 1148 261 0 0 0 chr5 73824860 73824889 -78712370 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1148 600 291 0 16 chr5 73825027 73825209 -78712050 - B3A SINE B2 -18 180 2 7 1148 282 268 0 0 chr5 73825697 73825809 -78711450 + (TG)n Simple_repeat Simple_repeat 1 112 0 7 1148 333 279 23 0 chr5 73825813 73825899 -78711360 + (CATG)n Simple_repeat Simple_repeat 3 90 0 7 1148 691 285 137 8 chr5 73825913 73826168 -78711091 - B4A SINE B4 0 292 5 7 1148 338 250 11 54 chr5 73826229 73826322 -78710937 - MLT1G1 LTR MaLR -48 531 443 7 1148 408 322 168 27 chr5 73826405 73826667 -78710592 - MLT1G1 LTR MaLR -280 299 1 7 1148 249 315 32 21 chr5 73827851 73827945 -78709314 - MLT1A1 LTR MaLR -19 389 295 7 1148 22 0 0 0 chr5 73828916 73828938 -78708321 + AT_rich Low_complexity Low_complexity 1 22 0 7 1148 248 202 5 53 chr5 73829224 73829283 -78707976 + LTR33A LTR ERVL 156 216 -315 7 1148 245 305 132 72 chr5 73829454 73829606 -78707653 - RMER21A LTR ERV1 -86 861 701 7 1148 22 0 0 0 chr5 73830433 73830455 -78706804 + AT_rich Low_complexity Low_complexity 1 22 0 7 1148 233 313 0 57 chr5 73831053 73831141 -78706118 - MLT1A LTR MaLR -8 366 284 7 1148 191 336 68 42 chr5 73831695 73831813 -78705446 + L2a LINE L2 3214 3334 -92 7 1148 400 313 96 0 chr5 73832918 73833084 -78704175 + HAL1-2a_MD LINE L1 2319 2500 -524 7 1148 240 299 145 28 chr5 73833088 73833267 -78703992 - MIR SINE MIR -1 261 62 7 1148 1192 125 69 10 chr5 73833949 73834151 -78703108 - MTC LTR MaLR -1 420 207 7 1148 225 0 0 0 chr5 73834151 73834176 -78703083 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 7 1148 552 30 0 0 chr5 73834177 73834243 -78703016 + (TTCCC)n Simple_repeat Simple_repeat 2 67 0 7 1148 4941 162 59 63 chr5 73834247 73834358 -78702901 - RMER1A Other Other -21 1009 896 7 1148 603 40 0 0 chr5 73834358 73834432 -78702827 + (CCA)n Simple_repeat Simple_repeat 1 74 0 7 1148 4941 162 59 63 chr5 73834432 73835333 -78701926 - RMER1A Other Other -135 895 2 7 1148 1216 189 0 0 chr5 73835343 73835549 -78701710 - MTC LTR MaLR -213 208 3 7 1148 23105 19 0 0 chr5 73835837 73839151 -78698108 - L1Md_T LINE L1 -1 6581 3268 7 1148 1028 141 6 0 chr5 73839554 73839731 -78697528 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 7 1148 530 230 9 69 chr5 73839736 73839891 -78697368 - B1F SINE Alu 0 315 13 7 1148 316 250 23 0 chr5 73839891 73839979 -78697280 - L1MA8 LINE L1 -397 5894 5805 7 1148 733 262 65 108 chr5 73839979 73840185 -78697074 - B4 SINE B4 -13 279 78 7 1148 4914 69 53 2 chr5 73840185 73840825 -78696434 - L1_Mus1 LINE L1 0 6567 5895 7 1148 733 270 61 97 chr5 73840825 73840904 -78696355 - B4 SINE B4 -215 77 5 7 1148 222 118 0 0 chr5 73841141 73841175 -78696084 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1148 266 285 0 7 chr5 73841227 73841365 -78695894 + (CA)n Simple_repeat Simple_repeat 2 138 0 7 1148 1526 305 70 48 chr5 73841415 73842399 -78694860 - L1_Rod LINE L1 -11 5836 4831 7 1148 4842 119 9 21 chr5 73842405 73843183 -78694076 - L1_Mur2 LINE L1 -410 5467 4699 7 1148 446 264 0 0 chr5 73843193 73843299 -78693960 - L1_Mm LINE L1 -1046 4837 4732 7 1148 922 264 20 0 chr5 73843324 73843525 -78693734 - B3 SINE B2 -5 211 7 7 1148 1064 283 82 18 chr5 73843531 73843862 -78693397 + Lx8 LINE L1 6246 6597 -876 7 1148 483 259 0 27 chr5 73843943 73844054 -78693205 - L1M3e LINE L1 -6918 112 5 7 1148 414 94 0 0 chr5 73844141 73844205 -78693054 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1148 250 300 12 0 chr5 73844564 73844644 -78692615 + ID4 SINE ID 2 82 -1 7 1148 838 283 10 48 chr5 73844703 73844993 -78692266 + B4A SINE B4 2 280 -12 7 1148 357 24 0 0 chr5 73844996 73845038 -78692221 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1148 354 45 0 0 chr5 73845040 73845084 -78692175 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1148 21 36 0 0 chr5 73845098 73845126 -78692133 + AT_rich Low_complexity Low_complexity 1 28 0 7 1148 433 272 146 82 chr5 73845128 73845505 -78691754 + L1MEg LINE L1 516 916 -5168 7 1148 238 393 0 0 chr5 73846496 73846641 -78690618 - L1MA5 LINE L1 -2 6298 6154 7 1148 190 120 0 74 chr5 73846934 73846988 -78690271 + C-rich Low_complexity Low_complexity 3 52 0 7 1148 232 264 8 8 chr5 73847047 73847173 -78690086 + C-rich Low_complexity Low_complexity 3 128 0 7 1148 393 376 61 58 chr5 73847343 73847635 -78689624 + Tigger7 DNA MER2_type 1 294 -2197 7 1148 760 238 0 7 chr5 73847635 73847783 -78689476 - RSINE1 SINE B4 -15 150 4 7 1148 393 376 61 58 chr5 73847783 73847866 -78689393 + Tigger7 DNA MER2_type 295 377 -2114 7 1148 543 294 37 115 chr5 73847878 73848147 -78689112 + Tigger7 DNA MER2_type 2241 2488 -3 7 1148 466 271 34 54 chr5 73848379 73848527 -78688732 + B1F SINE Alu 1 145 -4 7 1148 25 0 0 0 chr5 73848532 73848557 -78688702 + AT_rich Low_complexity Low_complexity 1 25 0 7 1148 184 360 71 14 chr5 73848724 73848865 -78688394 - MIRc SINE MIR -118 150 2 7 1148 414 0 0 0 chr5 73849649 73849695 -78687564 + (CATA)n Simple_repeat Simple_repeat 1 46 0 7 1148 3023 23 42 3 chr5 73850366 73850719 -78686540 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1148 56104 25 13 3 chr5 73850719 73857124 -78680135 - IAPEz-int LTR ERVK 0 6481 67 7 1148 226 216 0 0 chr5 73857126 73857163 -78680096 - RLTR27 LTR ERVK -37 272 236 7 1148 557 84 263 0 chr5 73857163 73857258 -78680001 - IAPEz-int LTR ERVK -6354 127 8 7 1148 3023 23 42 3 chr5 73857258 73857611 -78679648 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1148 1156 158 46 18 chr5 73858440 73858659 -78678600 + URR1B DNA MER1_type 1 225 0 7 1148 449 272 58 45 chr5 73858661 73858815 -78678444 - B4 SINE B4 -131 161 6 7 1148 371 235 201 22 chr5 73858868 73859007 -78678252 + MER5A DNA MER1_type 1 164 -25 7 1148 485 285 47 98 chr5 73860870 73860950 -78676309 + MLT1J LTR MaLR 6 83 -429 7 1148 1506 194 166 95 chr5 73860950 73861445 -78675814 + MT2A LTR ERVL 3 532 -1 7 1148 485 285 47 98 chr5 73861445 73861578 -78675681 + MLT1J LTR MaLR 84 208 -304 7 1148 1015 232 96 16 chr5 73861602 73861852 -78675407 + B4A SINE B4 22 291 -1 7 1148 1946 96 18 0 chr5 73862154 73862434 -78674825 + Lx3_Mus LINE L1 6714 6998 -11 7 1148 836 265 5 23 chr5 73862445 73862661 -78674598 + B3 SINE B2 5 216 0 7 1148 1967 172 87 8 chr5 73862969 73863327 -78673932 - ORR1B1 LTR MaLR -8 386 1 7 1148 438 288 120 34 chr5 73863343 73863594 -78673665 - MLT1B LTR MaLR -19 371 47 7 1148 933 276 33 8 chr5 73863596 73863837 -78673422 - MLT1A0 LTR MaLR 0 365 119 7 1148 686 243 20 31 chr5 73864207 73864402 -78672857 + B3A SINE B2 5 197 -1 7 1148 327 75 0 0 chr5 73864964 73865004 -78672255 - HAL1-3A_ME LINE L1 -844 2014 1975 7 1148 186 43 0 0 chr5 73865004 73865027 -78672232 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1148 546 16 0 0 chr5 73865026 73865089 -78672170 + (TA)n Simple_repeat Simple_repeat 2 64 0 7 1148 483 238 164 87 chr5 73865126 73865333 -78671926 - ID_B1 SINE B4 0 224 2 7 1148 522 108 0 26 chr5 73865690 73865766 -78671493 + B2_Mm2 SINE B2 68 141 -54 7 1148 279 0 0 0 chr5 73866210 73866241 -78671018 + (TC)n Simple_repeat Simple_repeat 1 31 0 7 1148 309 256 75 43 chr5 73866248 73866342 -78670917 - PB1D10 SINE Alu -8 109 13 7 1148 231 276 155 40 chr5 73866395 73866569 -78670690 - L1M4 LINE L1 -278 5906 5713 7 1148 657 314 41 44 chr5 73866581 73866947 -78670312 - L1M4 LINE L1 -540 5634 5270 7 1148 312 161 0 0 chr5 73866947 73867028 -78670231 + CT-rich Low_complexity Low_complexity 1 81 0 7 1148 287 159 0 113 chr5 73867110 73867181 -78670078 - L1MD LINE L1 -863 5283 5221 7 1148 456 285 111 46 chr5 73867193 73867402 -78669857 - L1MB8 LINE L1 -147 6031 5805 7 1148 1265 104 38 0 chr5 73867402 73867585 -78669674 + B2_Mm1a SINE B2 2 191 -2 7 1148 456 285 111 46 chr5 73867585 73867636 -78669623 - L1MB8 LINE L1 -374 5804 5754 7 1148 200 279 49 0 chr5 73868314 73868375 -78668884 - L3b LINE CR1 -268 214 151 7 1148 736 297 66 60 chr5 73868618 73868966 -78668293 - L1MB8 LINE L1 -444 5734 5385 7 1148 343 266 0 105 chr5 73869004 73869109 -78668150 - B4 SINE B4 0 292 199 7 1148 321 382 75 24 chr5 73869274 73869486 -78667773 + MLT1A1 LTR MaLR 4 226 -182 7 1148 2896 114 18 9 chr5 73869514 73869948 -78667311 + MT2B LTR ERVL 163 600 -1 7 1148 612 218 58 117 chr5 73870529 73870573 -78666686 - MTE2b LTR MaLR -1 378 339 7 1148 1381 101 16 0 chr5 73870573 73870762 -78666497 + B2_Mm2 SINE B2 1 192 -3 7 1148 642 250 67 11 chr5 73870762 73870940 -78666319 - MTE2b LTR MaLR -23 356 169 7 1148 24 32 0 0 chr5 73870940 73870971 -78666288 + AT_rich Low_complexity Low_complexity 1 31 0 7 1148 448 143 265 0 chr5 73871054 73871152 -78666107 - B1_Mur4 SINE Alu -21 129 6 7 1148 677 247 12 47 chr5 73871179 73871349 -78665910 - MTE2b LTR MaLR -200 179 16 7 1148 1850 57 0 7 chr5 73873463 73873716 -78663543 - L1_Mus1 LINE L1 -624 6012 5773 7 1148 3675 72 16 0 chr5 73873716 73874200 -78663059 - RLTR13D4 LTR ERVK -541 492 1 7 1148 405 247 89 51 chr5 73874202 73874360 -78662899 + MIR SINE MIR 92 255 -7 7 1148 229 244 0 0 chr5 73876532 73876577 -78660682 - MIRm SINE MIR -119 157 113 7 1148 274 176 132 26 chr5 73876594 73876670 -78660589 - PB1D10 SINE Alu 0 117 34 7 1148 708 300 138 12 chr5 73876817 73877070 -78660189 + B4A SINE B4 2 286 -6 7 1148 764 261 185 30 chr5 73877441 73877804 -78659455 - MTD LTR MaLR 0 419 1 8 1148 511 270 47 31 chr5 73878182 73878373 -78658886 - B3A SINE B2 0 198 5 8 1148 3499 117 73 35 chr5 73878955 73879533 -78657726 + MT2B LTR ERVL 2 601 0 8 1148 333 361 44 16 chr5 73879870 73880053 -78657206 + MIR3 SINE MIR 5 192 -16 8 1148 21 0 0 0 chr5 73880491 73880512 -78656747 + AT_rich Low_complexity Low_complexity 1 21 0 8 1148 226 128 0 60 chr5 73882570 73882620 -78654639 + G-rich Low_complexity Low_complexity 6 52 0 8 1148 295 235 8 57 chr5 73882808 73882930 -78654329 + G-rich Low_complexity Low_complexity 5 120 0 8 1148 359 297 86 112 chr5 73884654 73884698 -78652561 - B3 SINE B2 0 216 182 8 1148 294 29 0 0 chr5 73884698 73884733 -78652526 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1148 359 297 86 112 chr5 73884733 73884762 -78652497 - B3 SINE B2 -35 181 163 8 1148 222 37 0 0 chr5 73884762 73884789 -78652470 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1148 392 269 105 30 chr5 73884789 73884911 -78652348 - B3A SINE B2 -54 162 25 8 1148 337 324 54 9 chr5 73885301 73885413 -78651846 - L1MEd LINE L1 -5960 159 43 8 1148 1295 180 182 111 chr5 73885431 73885533 -78651726 - MT2A LTR ERVL -10 523 440 8 1148 271 59 0 89 chr5 73885533 73885589 -78651670 + (CATA)n Simple_repeat Simple_repeat 2 52 0 8 1148 1295 180 182 111 chr5 73885589 73885974 -78651285 - MT2A LTR ERVL -94 439 1 8 1148 671 235 28 66 chr5 73886518 73886700 -78650559 - MTEb LTR MaLR 0 379 205 8 1148 417 284 108 95 chr5 73886965 73887206 -78650053 - MTEb LTR MaLR -135 244 1 8 1148 396 292 146 0 chr5 73887505 73887635 -78649624 - ORR1E LTR MaLR -210 149 1 8 1148 954 215 25 10 chr5 73887845 73888047 -78649212 + B3 SINE B2 1 205 -11 8 1148 241 313 128 71 chr5 73888899 73889040 -78648219 + MLT1N2 LTR MaLR 407 555 -7 8 1148 1469 180 54 51 chr5 73889215 73889624 -78647635 + RMER17C LTR ERVK 1 410 0 8 1148 270 304 71 36 chr5 73890288 73890428 -78646831 + MIRm SINE MIR 3 147 -129 8 1148 627 108 0 0 chr5 73890608 73890701 -78646558 + (TG)n Simple_repeat Simple_repeat 1 93 0 8 1148 184 359 16 33 chr5 73892245 73892366 -78644893 - MIR SINE MIR -128 134 16 8 1148 231 214 35 35 chr5 73893127 73893185 -78644074 - MIRb SINE MIR -74 194 137 8 1148 195 125 0 0 chr5 73893614 73893654 -78643605 + (T)n Simple_repeat Simple_repeat 1 40 0 8 1148 213 121 0 0 chr5 73893668 73893701 -78643558 - PB1D7 SINE Alu -59 61 29 8 1148 218 191 24 0 chr5 73894066 73894108 -78643151 + G-rich Low_complexity Low_complexity 1 43 0 8 1148 586 261 111 18 chr5 73894163 73894389 -78642870 + L1MB7 LINE L1 5928 6174 -10 8 1148 463 261 9 9 chr5 73895087 73895203 -78642056 - B1F SINE Alu 0 149 34 8 1148 491 292 34 0 chr5 73895243 73895390 -78641869 + L1MA5 LINE L1 6143 6294 -6 8 1148 356 282 106 1 chr5 73895393 73895711 -78641548 - L1MA4A LINE L1 -379 5921 5561 8 1148 720 246 127 62 chr5 73895908 73896071 -78641188 - L1MA4A LINE L1 -789 5354 5200 8 1148 243 61 0 0 chr5 73896071 73896104 -78641155 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 8 1148 720 246 127 62 chr5 73896104 73896295 -78640964 - L1MA4A LINE L1 -944 5199 4978 8 1148 428 136 11 0 chr5 73896308 73896396 -78640863 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 8 1148 522 190 114 16 chr5 73896397 73896520 -78640739 - B1_Mur2 SINE Alu 0 149 15 8 1148 215 286 94 60 chr5 73896406 73896555 -78640704 - B4A SINE B4 -72 220 67 8 1148 343 266 112 21 chr5 73896582 73896770 -78640489 - L1MA4A LINE L1 -1176 4967 4763 8 1148 311 304 41 48 chr5 73896772 73896838 -78640421 - L1MA4A LINE L1 -1329 4814 4746 8 1148 279 0 0 0 chr5 73896838 73896869 -78640390 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1148 837 138 21 21 chr5 73896869 73897010 -78640249 - B1_Mur4 SINE Alu -9 141 1 8 1148 311 304 41 48 chr5 73897010 73897087 -78640172 - L1MA4A LINE L1 -1398 4745 4672 8 1148 709 196 43 14 chr5 73897347 73897487 -78639772 + B1_Mur1 SINE Alu 5 148 -1 8 1148 349 313 57 62 chr5 73897727 73897904 -78639355 + MER58A DNA MER1_type 1 176 -48 8 1148 226 160 0 20 chr5 73898249 73898300 -78638959 - L1MA4A LINE L1 -1719 4421 4372 8 1148 1524 37 21 21 chr5 73898381 73898574 -78638685 - B2_Mm1t SINE B2 0 193 1 8 1148 444 19 0 0 chr5 73900660 73900713 -78636546 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1148 346 233 14 0 chr5 73901330 73901403 -78635856 - ID4_ SINE ID -6 77 4 8 1148 1296 224 101 72 chr5 73902794 73903222 -78634037 - RMER10A LTR ERVL 0 442 3 8 1148 281 326 33 0 chr5 73903317 73903409 -78633850 - MER5A DNA MER1_type -93 96 2 8 1148 454 280 262 11 chr5 73903492 73903779 -78633480 - MLT1A0 LTR MaLR -5 360 2 8 1148 1257 41 7 0 chr5 73904741 73904888 -78632371 + B1_Mus1 SINE Alu 1 148 0 8 1148 228 288 34 67 chr5 73905060 73905179 -78632080 + RMER12 LTR ERVK 731 845 -477 8 1148 431 181 17 17 chr5 73905179 73905297 -78631962 + (TA)n Simple_repeat Simple_repeat 2 119 0 8 1148 616 192 7 7 chr5 73905329 73905411 -78631848 + (TATG)n Simple_repeat Simple_repeat 2 82 0 8 1148 234 0 0 0 chr5 73905411 73905437 -78631822 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 1148 616 192 7 7 chr5 73905437 73905501 -78631758 + (TATG)n Simple_repeat Simple_repeat 1 65 0 8 1148 822 234 82 57 chr5 73905516 73905761 -78631498 - B4A SINE B4 0 292 42 8 1148 1322 80 62 0 chr5 73906227 73906403 -78630856 + B2_Mm2 SINE B2 2 188 -7 8 1148 366 222 0 82 chr5 73907285 73907383 -78629876 + PB1D10 SINE Alu 21 110 -7 8 1148 254 286 132 18 chr5 73908450 73908564 -78628695 + Tigger12 DNA MER2_type 272 398 -1561 8 1148 2215 139 94 6 chr5 73908646 73909008 -78628251 + ORR1B1 LTR MaLR 1 394 0 8 1148 284 233 136 40 chr5 73912439 73912564 -78624695 - L1MB8 LINE L1 -2 6176 6040 8 1148 301 275 14 42 chr5 73912620 73912764 -78624495 - L1MB8 LINE L1 -272 5906 5767 8 1148 22 0 0 0 chr5 73916383 73916405 -78620854 + AT_rich Low_complexity Low_complexity 1 22 0 8 1148 306 0 0 0 chr5 73916537 73916571 -78620688 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8 1148 35 71 0 0 chr5 73916597 73916667 -78620592 + AT_rich Low_complexity Low_complexity 1 70 0 8 1148 227 194 57 43 chr5 73916794 73916864 -78620395 + Tigger15a DNA TcMar 497 567 -148 8 1148 317 259 449 8 chr5 73917134 73917312 -78619947 - MTC LTR MaLR -16 391 134 8 1148 5197 233 24 18 chr5 73917321 73918532 -78618727 + Lx6 LINE L1 6095 7572 -124 8 1148 27 49 0 0 chr5 73918532 73918573 -78618686 + AT_rich Low_complexity Low_complexity 1 41 0 8 1148 601 218 73 22 chr5 73918655 73918731 -78618528 - MTC LTR MaLR -278 143 58 8 1148 1830 53 0 4 chr5 73918731 73918959 -78618300 + L1Md_T LINE L1 6356 6582 0 8 1148 601 218 73 22 chr5 73918959 73919018 -78618241 - MTC LTR MaLR -364 57 1 8 1148 262 280 26 132 chr5 73919132 73919284 -78617975 - RLTR25B LTR ERVK -449 579 444 8 1148 520 224 9 45 chr5 73919174 73919286 -78617973 - B1_Mur4 SINE Alu -3 147 40 8 1148 332 230 21 75 chr5 73919211 73919305 -78617954 - MT2B LTR ERVL -338 263 175 8 1148 243 310 40 10 chr5 73919369 73919470 -78617789 + L1M5 LINE L1 4084 4187 -1959 8 1148 441 0 0 0 chr5 73920509 73920558 -78616701 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 8 1148 457 208 65 9 chr5 73920558 73920665 -78616594 - ID_B1 SINE B4 -2 222 110 8 1148 531 56 0 0 chr5 73920696 73920767 -78616492 + (TG)n Simple_repeat Simple_repeat 2 72 0 8 1148 202 276 76 38 chr5 73920773 73920852 -78616407 - L2 LINE L2 -501 2918 2837 8 1148 837 117 21 28 chr5 73921245 73921386 -78615873 - URR1B DNA MER1_type 0 225 86 8 1148 453 248 36 60 chr5 73921386 73921405 -78615854 + CYRA11_Mm Unknown Y-chromosome 202 327 -290 8 1148 249 320 153 20 chr5 73921445 73921700 -78615559 - L2 LINE L2 -1223 2196 1908 8 1148 399 318 33 56 chr5 73921740 73921920 -78615339 + B3A SINE B2 7 182 -16 8 1148 303 143 0 20 chr5 73921929 73921964 -78615295 + HAL1-3A_ME LINE L1 1977 2011 -847 8 1148 549 0 0 0 chr5 73921964 73922025 -78615234 + (GA)n Simple_repeat Simple_repeat 2 62 0 8 1148 303 143 0 20 chr5 73922025 73922039 -78615220 + HAL1-3A_ME LINE L1 2012 2025 -833 8 1148 717 255 90 57 chr5 73922067 73922312 -78614947 - MER2 DNA MER2_type -22 323 71 8 1148 973 152 0 0 chr5 73923001 73923146 -78614113 - B1_Mus1 SINE Alu -2 146 2 8 1148 22 0 0 0 chr5 73923879 73923901 -78613358 + AT_rich Low_complexity Low_complexity 1 22 0 8 1149 210 71 0 0 chr5 73924732 73924760 -78612499 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1149 265 114 186 0 chr5 73924898 73924968 -78612291 - Lx9 LINE L1 -40 7604 7522 8 1149 888 131 0 0 chr5 73924968 73925201 -78612058 + (TG)n Simple_repeat Simple_repeat 1 233 0 8 1149 318 198 18 119 chr5 73925219 73925328 -78611931 - Lx9 LINE L1 -268 7376 7279 8 1149 32 26 0 0 chr5 73925642 73925681 -78611578 + AT_rich Low_complexity Low_complexity 1 39 0 8 1149 230 273 123 8 chr5 73926327 73926449 -78610810 - MER33 DNA MER1_type -104 220 85 8 1149 197 265 68 48 chr5 73926908 73927011 -78610248 - MIRc SINE MIR -62 206 102 8 1149 1149 161 10 25 chr5 73927877 73928075 -78609184 + URR1B DNA MER1_type 3 197 -28 8 1149 263 228 59 98 chr5 73928074 73928088 -78609171 - ORR1E LTR MaLR -36 343 337 8 1149 1265 205 97 9 chr5 73928088 73928428 -78608831 + ORR1D2 LTR MaLR 1 370 0 8 1149 263 228 59 98 chr5 73928428 73928515 -78608744 - ORR1E LTR MaLR -43 336 246 8 1149 303 351 27 0 chr5 73928517 73928628 -78608631 - ORR1E LTR MaLR -230 129 16 8 1149 3087 281 93 84 chr5 73928601 73929275 -78607984 - ORR1E-int LTR MaLR -32 1760 901 8 1149 1155 82 0 0 chr5 73929275 73929421 -78607838 - B1_Mus1 SINE Alu -2 146 1 8 1149 3087 283 111 80 chr5 73929421 73930205 -78607054 - ORR1E-int LTR MaLR -680 900 35 8 1149 638 260 23 23 chr5 73930207 73930380 -78606879 - MTEa LTR MaLR -205 174 2 8 1149 580 333 80 18 chr5 73930719 73930945 -78606314 - MLT1A0 LTR MaLR -56 309 70 8 1149 1250 77 59 0 chr5 73933245 73933414 -78603845 + B2_Mm1t SINE B2 1 179 -14 8 1149 279 105 415 0 chr5 73933460 73933554 -78603705 + B2_Mm2 SINE B2 57 189 -6 8 1149 482 261 75 13 chr5 73933645 73933804 -78603455 + L1MC4 LINE L1 6815 6983 -1059 8 1149 407 281 39 10 chr5 73934080 73934184 -78603075 - MER88 LTR ERVL -216 248 142 8 1149 460 271 45 8 chr5 73934356 73934490 -78602769 + B4 SINE B4 1 139 -153 8 1149 829 280 16 12 chr5 73934462 73934688 -78602571 + B4 SINE B4 62 286 -6 8 1149 336 250 266 21 chr5 73937541 73937965 -78599294 - L1MEd LINE L1 -3229 2917 2381 8 1149 245 192 169 60 chr5 73938879 73938962 -78598297 - L1MEd LINE L1 -4862 1274 1183 8 1149 1089 170 58 24 chr5 73939831 73940036 -78597223 + URR1B DNA MER1_type 14 225 0 8 1149 619 278 77 0 chr5 73940159 73940328 -78596931 + B3 SINE B2 12 193 -23 8 1149 5946 162 76 23 chr5 73940781 73941960 -78595299 - RMER12 LTR ERVK -109 1739 1 9 1149 214 302 111 0 chr5 73941963 73942026 -78595233 - PB1D10 SINE Alu -46 71 2 9 1149 615 14 0 0 chr5 73942901 73942973 -78594286 + (TC)n Simple_repeat Simple_repeat 1 72 0 9 1149 306 0 0 0 chr5 73947951 73947985 -78589274 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 9 1149 184 278 0 0 chr5 73948197 73948233 -78589026 - MIRb SINE MIR -23 245 210 9 1149 276 227 26 39 chr5 73948701 73948779 -78588480 + CT-rich Low_complexity Low_complexity 1 77 0 9 1149 1796 144 52 10 chr5 73952864 73953172 -78584087 - ORR1A4 LTR MaLR -8 321 1 9 1149 302 243 100 0 chr5 73953707 73953777 -78583482 + ID4_ SINE ID 1 77 -6 9 1149 893 113 212 21 chr5 73953796 73953985 -78583274 + URR1B DNA MER1_type 1 225 0 9 1149 357 247 71 10 chr5 73954000 73954098 -78583161 + PB1D7 SINE Alu 1 104 -16 9 1149 203 158 0 0 chr5 73954110 73954148 -78583111 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 9 1149 573 42 0 0 chr5 73954371 73954443 -78582816 + (TG)n Simple_repeat Simple_repeat 2 73 0 9 1149 492 138 137 78 chr5 73954463 73954565 -78582694 - B3 SINE B2 -106 110 3 9 1149 385 211 80 35 chr5 73954601 73954714 -78582545 - PB1D7 SINE Alu 0 120 3 9 1149 1309 251 64 10 chr5 73955716 73956014 -78581245 - ORR1D2 LTR MaLR -56 314 1 9 1149 434 284 116 65 chr5 73956416 73956631 -78580628 + MLT1A0 LTR MaLR 119 344 -21 9 1149 603 253 20 0 chr5 73956678 73956824 -78580435 - ERVL-B4-int LTR ERVL -358 5356 5208 9 1149 869 260 39 0 chr5 73956912 73957120 -78580139 - ID_B1 SINE B4 -4 220 5 9 1149 384 239 84 63 chr5 73957196 73957339 -78579920 + ERVL-B4-int LTR ERVL 4417 4562 -1152 9 1149 3521 233 93 27 chr5 73957392 73958466 -78578793 - ERVL-B4-int LTR ERVL -735 4979 3809 9 1149 1506 288 24 18 chr5 73958485 73958937 -78578322 - ERVL-B4-int LTR ERVL -1962 3752 3298 9 1149 660 199 52 46 chr5 73958943 73959096 -78578163 - MT2A LTR ERVL -379 154 1 9 1149 654 293 72 45 chr5 73959120 73959452 -78577807 - ERVL-B4-int LTR ERVL -2595 3119 2779 9 1149 315 194 0 0 chr5 73959464 73959562 -78577697 + CT-rich Low_complexity Low_complexity 2 99 0 9 1149 246 105 0 0 chr5 73959563 73959601 -78577658 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1149 913 284 54 12 chr5 73959622 73959864 -78577395 - B4A SINE B4 -40 252 1 9 1149 1030 279 91 3 chr5 73959894 73960214 -78577045 - ERVL-B4-int LTR ERVL -2978 2736 2389 9 1149 910 263 113 15 chr5 73960210 73960538 -78576721 - ERVL-B4-int LTR ERVL -3673 2041 1682 9 1149 232 190 12 37 chr5 73960539 73960621 -78576638 - ORR1D1 LTR MaLR -249 118 39 9 1149 593 165 22 43 chr5 73960603 73960742 -78576517 - ORR1D1 LTR MaLR -236 138 3 9 1149 243 125 0 0 chr5 73961266 73961306 -78575953 + (TAA)n Simple_repeat Simple_repeat 3 42 0 9 1149 308 364 27 16 chr5 73961308 73961495 -78575764 + L1MEg LINE L1 91 279 -5805 9 1149 502 282 12 82 chr5 73962253 73962423 -78574836 + Tigger5 DNA MER2_type 4 161 -2245 9 1149 1682 136 72 19 chr5 73962945 73963303 -78573956 - ORR1A4 LTR MaLR 0 394 1 9 1149 2356 85 25 0 chr5 73964528 73964846 -78572413 - ORR1A2 LTR MaLR 0 327 2 9 1149 274 303 208 18 chr5 73965049 73965217 -78572042 - LTR40c LTR ERVL -226 239 40 9 1149 453 50 0 0 chr5 73966456 73966516 -78570743 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 9 1149 236 162 0 0 chr5 73966986 73967023 -78570236 + C-rich Low_complexity Low_complexity 2 38 0 9 1149 701 107 18 0 chr5 73967024 73967136 -78570123 + (TTCC)n Simple_repeat Simple_repeat 4 117 0 9 1149 265 180 20 0 chr5 73967147 73967197 -78570062 - ID SINE ID -166 58 8 9 1149 259 145 41 91 chr5 73968370 73968491 -78568768 - RMER17D LTR ERVK -382 507 393 9 1149 278 197 92 0 chr5 73968642 73968718 -78568541 - L1MB2 LINE L1 -18 6153 6071 9 1149 656 299 102 23 chr5 73968786 73969091 -78568168 - L1M3 LINE L1 -379 5804 5476 9 1149 429 346 102 18 chr5 73969576 73969850 -78567409 - MARNA DNA Mariner -247 339 43 9 1149 672 36 0 0 chr5 73969850 73969933 -78567326 + (TC)n Simple_repeat Simple_repeat 1 83 0 9 1149 306 125 123 15 chr5 73970080 73970145 -78567114 - Lx9 LINE L1 -874 6770 6699 9 1149 2364 164 27 7 chr5 73970151 73970471 -78566788 + MTC LTR MaLR 1 330 -91 9 1149 1729 126 8 151 chr5 73970471 73970855 -78566404 + ORR1A4 LTR MaLR 1 329 0 9 1149 2364 164 27 7 chr5 73970855 73970939 -78566320 + MTC LTR MaLR 331 413 -8 9 1149 959 193 20 15 chr5 73970942 73971142 -78566117 - Lx9 LINE L1 -946 6698 6498 9 1149 285 75 0 0 chr5 73971181 73971221 -78566038 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1149 426 296 18 84 chr5 73971258 73971424 -78565835 + MIR SINE MIR 38 192 -70 9 1149 280 323 14 28 chr5 73971481 73971625 -78565634 + MER102c DNA MER1_type 182 331 0 9 1149 260 342 80 18 chr5 73971791 73971904 -78565355 - LTR81C LTR ERV1? 0 1153 1034 9 1149 987 284 49 11 chr5 73972131 73972398 -78564861 + B4 SINE B4 15 291 -1 9 1149 201 39 0 0 chr5 73972428 73972454 -78564805 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1149 3418 40 2 0 chr5 73972727 73973122 -78564137 + MTA_Mm LTR MaLR 1 396 0 9 1149 366 89 18 18 chr5 73973839 73973896 -78563363 - RLTR41 LTR ERV1 0 446 390 9 1149 1596 174 40 10 chr5 73973917 73974214 -78563045 + RLTR41 LTR ERV1 141 446 0 9 1149 584 252 68 72 chr5 73974285 73974507 -78562752 - ID_B1 SINE B4 -1 223 3 9 1149 4169 52 6 10 chr5 73974931 73975436 -78561823 + RLTR1C LTR ERV1 1 503 0 9 1149 3092 57 0 3 chr5 73975451 73975839 -78561420 - MTB LTR MaLR 0 400 14 9 1149 622 172 175 19 chr5 73975981 73976141 -78561118 - MER53 DNA hAT 0 193 9 9 1149 303 93 0 0 chr5 73976155 73976198 -78561061 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 9 1149 675 234 7 0 chr5 73977518 73977655 -78559604 + B1F SINE Alu 1 138 -11 9 1149 3622 201 51 43 chr5 73977896 73978707 -78558552 - RLTR40 LTR ERVK 0 817 1 9 1149 25 0 0 0 chr5 73978805 73978830 -78558429 + AT_rich Low_complexity Low_complexity 1 25 0 9 1149 36878 64 6 6 chr5 73978830 73984931 -78552328 - L1Md_F2 LINE L1 -4 6578 478 9 1149 1504 209 34 91 chr5 73985443 73985885 -78551374 - MTD LTR MaLR -2 417 1 9 1149 519 283 38 25 chr5 73986120 73986356 -78550903 + RLTR15 LTR ERVK 102 340 -19 9 1149 972 310 184 10 chr5 73986377 73986803 -78550456 - MTE-int LTR MaLR -422 1158 750 9 1149 2186 168 26 24 chr5 73986818 73987238 -78550021 - MTC LTR MaLR 0 421 1 9 1149 638 290 62 31 chr5 73987252 73987508 -78549751 - RMER5 LTR ERV1 -238 296 33 9 1149 306 325 8 49 chr5 73987787 73987910 -78549349 - MTEb LTR MaLR 0 379 262 9 1149 262 227 39 146 chr5 73988133 73988236 -78549023 - MTEb LTR MaLR -287 92 1 9 1149 1281 246 164 32 chr5 73988401 73988841 -78548418 + RMER5 LTR ERV1 37 534 0 9 1149 735 211 60 26 chr5 73988932 73989083 -78548176 - RLTR20A2 LTR ERVK 0 578 423 9 1149 722 221 90 33 chr5 73989074 73989353 -78547906 - RLTR20A2 LTR ERVK -285 283 1 9 1149 398 344 100 32 chr5 73989433 73989691 -78547568 - MLT1H1 LTR MaLR -316 275 9 9 1149 1215 167 53 158 chr5 73989801 73990256 -78547003 - RMER17C LTR ERVK 0 410 4 9 1149 435 38 0 0 chr5 73990379 73990432 -78546827 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1149 722 209 92 0 chr5 73990443 73990596 -78546663 - B4A SINE B4 -26 266 100 9 1149 255 175 0 0 chr5 73990844 73990884 -78546375 + L1MC4 LINE L1 6793 6832 -1210 9 1149 762 81 0 0 chr5 73991232 73991343 -78545916 + (CA)n Simple_repeat Simple_repeat 2 112 0 9 1149 393 148 0 0 chr5 73992326 73992407 -78544852 + (TA)n Simple_repeat Simple_repeat 2 82 0 9 1149 240 35 0 0 chr5 73993330 73993359 -78543900 + (TGGGGG)n Simple_repeat Simple_repeat 4 32 0 9 1149 222 384 52 68 chr5 73993683 73993993 -78543266 - L2c LINE L2 -2 3385 3081 9 1149 885 272 52 12 chr5 73994171 73994420 -78542839 + MLT2B2 LTR ERVL 5 263 -252 9 1149 717 357 17 24 chr5 73995058 73995356 -78541903 + MLT2B2 LTR ERVL 225 520 0 9 1149 1168 156 30 80 chr5 73996064 73996225 -78541034 + URR1A DNA MER1_type 1 163 -63 9 1149 2767 141 223 18 chr5 73996225 73996732 -78540527 + RMER19C LTR ERVK 1 611 0 9 1149 1168 156 30 80 chr5 73996732 73996747 -78540512 + URR1A DNA MER1_type 164 172 -54 9 1149 7918 69 11 16 chr5 73996747 73997775 -78539484 + RLTR13D5 LTR ERVK 1 1023 0 9 1149 1168 156 30 80 chr5 73997775 73997834 -78539425 + URR1A DNA MER1_type 173 225 -1 9 1149 225 323 31 41 chr5 73998128 73998225 -78539034 - B1F1 SINE Alu -53 96 1 9 1149 641 248 15 0 chr5 73998225 73998303 -78538956 - ID SINE ID -142 82 3 9 1149 213 154 0 0 chr5 74000232 74000271 -78536988 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 1 1149 180 274 12 88 chr5 74000559 74000639 -78536620 - L3 LINE CR1 -2774 1715 1642 2 1149 1180 75 0 0 chr5 74000956 74001103 -78536156 + B1_Mus2 SINE Alu 1 147 0 3 1149 183 100 0 0 chr5 74001107 74001137 -78536122 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 4 1149 1526 147 81 0 chr5 74001344 74001603 -78535656 + ORR1B2 LTR MaLR 1 280 -87 5 1149 532 165 0 0 chr5 74001784 74001869 -78535390 + ORR1B2 LTR MaLR 294 378 0 5 1149 450 0 0 0 chr5 74002238 74002288 -78534971 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1149 290 220 51 0 chr5 74002900 74002959 -78534300 - MIRb SINE MIR -29 239 178 7 1149 513 202 108 47 chr5 74003031 74003199 -78534060 + ID_B1 SINE B4 44 213 -11 8 1149 198 91 0 0 chr5 74003199 74003232 -78534027 + (CAA)n Simple_repeat Simple_repeat 2 34 0 9 1149 329 270 0 0 chr5 74003505 74003568 -78533691 - B1F SINE Alu -49 100 38 1 1149 513 0 0 0 chr5 74003896 74003953 -78533306 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1149 469 342 96 58 chr5 74004789 74005323 -78531936 + MLT1F2 LTR MaLR 3 556 -4 1 1149 180 184 0 0 chr5 74005671 74005709 -78531550 - L2c LINE L2 -437 2950 2913 1 1149 526 191 0 0 chr5 74005973 74006062 -78531197 - B1_Mur1 SINE Alu -1 148 60 1 1149 686 165 38 0 chr5 74006146 74006304 -78530955 + CT-rich Low_complexity Low_complexity 1 164 0 1 1149 435 240 201 32 chr5 74006304 74006493 -78530766 - ID_B1 SINE B4 -1 223 3 1 1149 620 289 13 20 chr5 74007345 74007497 -78529762 - RSINE1 SINE B4 -4 161 11 1 1149 879 246 79 138 chr5 74007862 74008349 -78528910 - RMER4A LTR ERVK -4 581 17 1 1149 2458 148 10 82 chr5 74008832 74009334 -78527925 - RMER4A LTR ERVK 0 466 1 1 1149 315 292 235 6 chr5 74009635 74009797 -78527462 + Charlie8 DNA MER1_type 51 242 -2186 2 1149 229 249 20 36 chr5 74009797 74009993 -78527266 - RMER17C LTR ERVK -138 272 80 2 1149 243 204 73 18 chr5 74010259 74010314 -78526945 + Charlie8 DNA MER1_type 434 491 -1937 2 1149 952 129 0 33 chr5 74010533 74010685 -78526574 - B1_Mus2 SINE Alu 0 147 1 2 1149 1832 179 40 40 chr5 74010965 74011343 -78525916 - ORR1C1 LTR MaLR 0 378 1 2 1149 5297 208 51 53 chr5 74011343 74012714 -78524545 - ORR1C1-int LTR MaLR 0 1370 3 2 1149 997 193 4 96 chr5 74012720 74012949 -78524310 - B3 SINE B2 -1 215 8 2 1149 279 312 43 55 chr5 74013084 74013247 -78524012 - L1MC LINE L1 -3659 2487 2327 2 1149 678 288 84 0 chr5 74013248 74013459 -78523800 + B4A SINE B4 2 230 -62 2 1149 598 303 68 64 chr5 74013459 74013707 -78523552 + B4A SINE B4 2 250 -42 2 1149 880 268 133 36 chr5 74013707 74014107 -78523152 + MTD LTR MaLR 1 388 -31 2 1149 244 245 31 41 chr5 74014133 74014231 -78523028 + (CATA)n Simple_repeat Simple_repeat 4 100 0 2 1149 402 69 0 0 chr5 74014265 74014323 -78522936 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 3 1149 264 30 0 0 chr5 74014333 74014366 -78522893 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1149 550 321 70 37 chr5 74014599 74014887 -78522372 - Tigger5 DNA MER2_type -2134 272 92 3 1149 2215 164 127 29 chr5 74014887 74015366 -78521893 + RLTR11A LTR ERVK 1 526 -2 3 1149 550 364 34 30 chr5 74015366 74015457 -78521802 - Tigger5 DNA MER2_type -2315 91 3 3 1149 540 169 30 18 chr5 74015964 74016133 -78521126 + CT-rich Low_complexity Low_complexity 4 174 0 3 1149 258 291 148 113 chr5 74017519 74017856 -78519403 + ORR1E LTR MaLR 1 349 -10 3 1149 342 0 0 0 chr5 74018610 74018648 -78518611 + (TTA)n Simple_repeat Simple_repeat 2 39 0 3 1149 860 242 72 65 chr5 74018651 74018845 -78518414 + Tigger5 DNA MER2_type 2127 2316 -90 3 1149 712 290 106 24 chr5 74018845 74019174 -78518085 - ORR1E LTR MaLR -1 358 3 3 1149 860 242 72 65 chr5 74019174 74019257 -78518002 + Tigger5 DNA MER2_type 2317 2406 0 3 1149 23 33 0 0 chr5 74020255 74020285 -78516974 + AT_rich Low_complexity Low_complexity 1 30 0 3 1149 532 134 50 74 chr5 74020350 74020471 -78516788 + PB1D9 SINE Alu 1 118 -2 4 1149 230 19 35 88 chr5 74023261 74023318 -78513941 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1149 216 0 0 0 chr5 74023337 74023361 -78513898 + (CCA)n Simple_repeat Simple_repeat 1 24 0 4 1149 440 325 68 36 chr5 74025856 74026105 -78511154 + MIRb SINE MIR 9 265 -3 4 1149 180 173 138 69 chr5 74026315 74026402 -78510857 + L2 LINE L2 2801 2893 -526 4 1149 22 0 0 0 chr5 74026478 74026500 -78510759 + AT_rich Low_complexity Low_complexity 1 22 0 4 1149 261 0 0 0 chr5 74027443 74027472 -78509787 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1149 582 264 113 47 chr5 74027500 74027582 -78509677 - B4A SINE B4 0 292 207 4 1149 405 0 0 0 chr5 74027582 74027627 -78509632 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 4 1149 582 264 113 47 chr5 74027627 74027818 -78509441 - B4A SINE B4 -86 206 3 4 1149 476 327 91 24 chr5 74027877 74028131 -78509128 - L2a LINE L2 -7 3419 3149 4 1149 262 248 62 62 chr5 74028410 74028522 -78508737 + PB1D7 SINE Alu 4 115 -5 5 1149 325 300 87 6 chr5 74029222 74029383 -78507876 + L1MA6 LINE L1 6127 6300 0 5 1149 22 0 0 0 chr5 74030470 74030492 -78506767 + AT_rich Low_complexity Low_complexity 1 22 0 5 1149 326 323 164 20 chr5 74032249 74032590 -78504669 - HAL1 LINE L1 -3 2504 2115 5 1149 672 194 34 48 chr5 74033101 74033247 -78504012 - B1_Mus2 SINE Alu -1 146 3 5 1149 655 222 69 0 chr5 74033456 74033600 -78503659 - B3 SINE B2 0 216 63 5 1149 214 226 67 109 chr5 74033725 74033844 -78503415 - B1_Mus1 SINE Alu -17 131 18 5 1149 318 219 174 58 chr5 74033745 74033866 -78503393 - ID_B1 SINE B4 -7 217 83 5 1149 204 67 0 0 chr5 74033919 74033949 -78503310 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1149 1132 22 14 42 chr5 74033964 74034107 -78503152 - B1_Mm SINE Alu -8 139 1 5 1149 753 12 0 0 chr5 74034848 74034934 -78502325 + (GA)n Simple_repeat Simple_repeat 1 86 0 6 1149 427 342 19 38 chr5 74036230 74036440 -78500819 + Charlie1 DNA MER1_type 42 247 -2534 6 1149 273 173 19 0 chr5 74036415 74036467 -78500792 + Charlie1 DNA MER1_type 2640 2692 -89 6 1149 359 260 0 20 chr5 74037221 74037323 -78499936 + CT-rich Low_complexity Low_complexity 2 101 0 6 1149 611 283 12 54 chr5 74037349 74037517 -78499742 - RSINE1 SINE B4 -3 162 2 6 1149 221 222 0 53 chr5 74038774 74038850 -78498409 + C-rich Low_complexity Low_complexity 2 73 0 6 1149 210 71 0 0 chr5 74038922 74038950 -78498309 + (CCG)n Simple_repeat Simple_repeat 2 29 0 6 1149 1116 207 20 0 chr5 74040440 74040643 -78496616 - B3 SINE B2 -8 208 2 6 1149 3262 77 9 26 chr5 74040645 74041100 -78496159 + Lx3A LINE L1 6518 6964 -17 6 1149 306 0 0 0 chr5 74041101 74041135 -78496124 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 6 1149 616 201 0 32 chr5 74041389 74041574 -78495685 + C-rich Low_complexity Low_complexity 1 179 0 6 1149 521 258 120 97 chr5 74041582 74041840 -78495419 - B4A SINE B4 -10 282 19 7 1149 205 288 112 86 chr5 74043463 74043615 -78493644 + MIR3 SINE MIR 38 193 -15 7 1149 841 176 147 11 chr5 74044266 74044450 -78492809 - B3 SINE B2 -6 210 2 7 1149 261 0 0 0 chr5 74045222 74045251 -78492008 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 7 1149 453 262 19 19 chr5 74045251 74045356 -78491903 - PB1D10 SINE Alu -12 105 1 7 1149 616 294 46 9 chr5 74045424 74045640 -78491619 - ID_B1 SINE B4 0 224 1 7 1149 690 122 0 0 chr5 74046112 74046219 -78491040 + (TCC)n Simple_repeat Simple_repeat 3 109 0 7 1149 323 312 27 47 chr5 74047393 74047559 -78489700 - MIRb SINE MIR -92 176 2 7 1149 355 329 199 35 chr5 74048256 74048628 -78488631 - MLT1J2 LTR MaLR -13 435 3 7 1149 396 0 0 0 chr5 74048878 74048922 -78488337 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1149 416 251 83 107 chr5 74050248 74050458 -78486801 - L1ME2 LINE L1 -157 6022 5815 8 1149 220 318 0 0 chr5 74050666 74050729 -78486530 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1149 243 146 0 0 chr5 74050729 74050770 -78486489 + (CATA)n Simple_repeat Simple_repeat 2 42 0 8 1149 507 183 18 88 chr5 74050942 74051056 -78486203 - MTEa LTR MaLR -2 377 272 8 1149 280 145 0 114 chr5 74051067 74051137 -78486122 - MTEa LTR MaLR -253 126 65 8 1149 241 234 0 94 chr5 74051068 74051153 -78486106 - MT2A LTR ERVL -408 125 49 8 1149 377 207 17 86 chr5 74051153 74051264 -78485995 - B1_Mus1 SINE Alu 0 120 9 8 1149 223 318 50 91 chr5 74051175 74051296 -78485963 - B4 SINE B4 -113 179 64 8 1149 362 74 19 0 chr5 74051383 74051437 -78485822 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 8 1149 1365 174 113 18 chr5 74052404 74052679 -78484580 - ORR1C1 LTR MaLR 0 378 78 8 1149 414 134 0 0 chr5 74052815 74052882 -78484377 + (A)n Simple_repeat Simple_repeat 1 67 0 8 1149 357 236 32 11 chr5 74053585 74053679 -78483580 - MTEa LTR MaLR 0 379 284 9 1149 778 312 50 64 chr5 74054390 74054766 -78482493 - MTEa LTR MaLR -6 373 3 9 1149 666 235 19 32 chr5 74054767 74054925 -78482334 + RSINE1 SINE B4 2 157 -8 9 143 3259 282 114 77 chr5 74054965 74056337 -78480922 - MTEa-int LTR MaLR -2 1578 156 9 1150 868 268 43 94 chr5 74056380 74056419 -78480840 - MTEa LTR MaLR -4 375 341 9 1150 1563 186 183 3 chr5 74056419 74056774 -78480485 - MTD LTR MaLR 0 419 1 9 1150 868 268 43 94 chr5 74056774 74057129 -78480130 - MTEa LTR MaLR -39 340 1 9 1150 2054 153 47 53 chr5 74057216 74057717 -78479542 - RLTR31A_Mm LTR ERVK -16 545 1 9 1150 369 0 0 0 chr5 74058833 74058874 -78478385 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1150 201 240 20 0 chr5 74059701 74059751 -78477508 + CT-rich Low_complexity Low_complexity 5 55 0 9 1150 212 237 0 0 chr5 74060707 74060766 -78476493 + (CCCCAG)n Simple_repeat Simple_repeat 4 62 0 9 1150 420 20 0 0 chr5 74061558 74061607 -78475652 + (CTAAA)n Simple_repeat Simple_repeat 3 51 0 9 1150 234 136 0 0 chr5 74062019 74062063 -78475196 + (TGG)n Simple_repeat Simple_repeat 1 44 0 1 1150 264 347 0 40 chr5 74062748 74062847 -78474412 - B4A SINE B4 -5 287 193 1 1150 891 276 65 32 chr5 74063007 74063284 -78473975 + B4A SINE B4 7 292 0 1 1150 412 354 30 34 chr5 74064458 74064695 -78472564 + MIR SINE MIR 15 250 -12 1 1150 210 37 0 0 chr5 74064934 74064961 -78472298 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 1 1150 545 248 169 14 chr5 74065147 74065360 -78471899 + MER2 DNA MER2_type 3 248 -97 1 1150 540 45 0 0 chr5 74065370 74065437 -78471822 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1 1150 467 311 49 0 chr5 74065461 74065583 -78471676 - B1F SINE Alu -20 129 2 1 1150 273 298 24 12 chr5 74065591 74065676 -78471583 + MER2 DNA MER2_type 255 340 -5 1 1150 256 207 20 30 chr5 74065916 74065999 -78471260 + B3 SINE B2 2 82 -113 1 1150 243 0 0 0 chr5 74067048 74067075 -78470184 + (TGG)n Simple_repeat Simple_repeat 3 29 0 1 1150 310 146 24 0 chr5 74067072 74067154 -78470105 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 1150 206 200 0 0 chr5 74068138 74068173 -78469086 + polypyrimidine Low_complexity Low_complexity 2 36 0 1 1150 396 0 0 0 chr5 74071195 74071239 -78466020 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1150 2840 79 14 51 chr5 74071715 74072130 -78465129 - L1_Mus2 LINE L1 0 6566 6167 1 1150 1058 46 0 0 chr5 74072130 74072255 -78465004 + L1_Mus2 LINE L1 5871 5995 -571 1 1150 369 0 0 0 chr5 74072564 74072605 -78464654 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1150 268 176 19 0 chr5 74072682 74072745 -78464514 + MIRc SINE MIR 70 136 -132 1 1150 21 36 0 0 chr5 74072911 74072939 -78464320 + AT_rich Low_complexity Low_complexity 1 28 0 1 1150 240 342 68 0 chr5 74073043 74073160 -78464099 - MER20B DNA MER1_type -366 417 293 1 1150 412 200 52 10 chr5 74073969 74074065 -78463194 + B1F SINE Alu 43 142 -7 1 1150 540 304 40 36 chr5 74074172 74074421 -78462838 + B4A SINE B4 11 260 -32 1 1150 334 108 0 30 chr5 74074436 74074503 -78462756 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1150 620 101 37 30 chr5 74077911 74078075 -78459184 + (TCTA)n Simple_repeat Simple_repeat 3 167 0 1 1150 231 189 0 0 chr5 74078080 74078133 -78459126 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 1 1150 910 57 33 44 chr5 74078134 74078316 -78458943 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1150 469 269 97 0 chr5 74078420 74078565 -78458694 + B3 SINE B2 47 205 -11 1 1150 969 269 99 56 chr5 74078580 74078954 -78458305 + Lx8 LINE L1 7084 7473 0 1 1150 450 174 28 0 chr5 74079306 74079415 -78457844 + CT-rich Low_complexity Low_complexity 3 114 0 1 1150 441 0 0 0 chr5 74079815 74079864 -78457395 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1150 841 265 0 11 chr5 74080516 74080707 -78456552 + B3 SINE B2 1 189 -27 1 1150 789 181 6 11 chr5 74080861 74081040 -78456219 + CT-rich Low_complexity Low_complexity 2 179 0 1 1150 567 182 20 0 chr5 74081067 74081166 -78456093 - B1_Mur1 SINE Alu -33 116 16 1 1150 888 212 11 52 chr5 74083427 74083698 -78453561 + ORR1D1 LTR MaLR 1 251 -127 1 1150 519 240 39 0 chr5 74083928 74084082 -78453177 + L1MA6 LINE L1 6141 6300 0 1 1150 250 222 0 0 chr5 74084088 74084133 -78453126 + B3A SINE B2 1 45 -153 1 1150 25 0 0 0 chr5 74084133 74084158 -78453101 + AT_rich Low_complexity Low_complexity 1 25 0 1 1150 4914 35 0 0 chr5 74084158 74084726 -78452533 - L1Md_T LINE L1 -2 6580 6013 1 1150 440 287 5 121 chr5 74084727 74084933 -78452326 + B3 SINE B2 34 215 -1 1 1150 27 0 0 0 chr5 74085502 74085529 -78451730 + AT_rich Low_complexity Low_complexity 1 27 0 1 1150 277 260 46 83 chr5 74087031 74087230 -78450029 - MTEa LTR MaLR -2 377 185 1 1150 1099 70 3 35 chr5 74087261 74087628 -78449631 + (CCAA)n Simple_repeat Simple_repeat 1 354 0 1 1150 237 33 0 0 chr5 74087636 74087666 -78449593 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1 1150 676 233 116 6 chr5 74088048 74088229 -78449030 - ID_B1 SINE B4 0 224 24 1 1150 307 329 115 61 chr5 74088424 74088719 -78448540 + MLT1J LTR MaLR 116 426 -86 1 1150 1038 134 36 41 chr5 74089512 74089707 -78447552 - B2_Mm2 SINE B2 0 195 2 1 1150 310 294 175 0 chr5 74089894 74090020 -78447239 + Lx8 LINE L1 7047 7194 -279 1 1150 528 246 51 126 chr5 74090027 74090241 -78447018 + B3A SINE B2 1 198 0 1 1150 1431 58 0 0 chr5 74090289 74090634 -78446625 + (TG)n Simple_repeat Simple_repeat 1 345 0 1 1150 594 41 0 0 chr5 74090655 74090728 -78446531 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1150 297 0 0 0 chr5 74090728 74090760 -78446499 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1150 321 265 77 0 chr5 74091305 74091422 -78445837 + L1MC2 LINE L1 6123 6248 -96 1 1150 509 140 0 21 chr5 74091780 74091875 -78445384 + CT-rich Low_complexity Low_complexity 5 97 0 1 1150 796 181 20 14 chr5 74091877 74092023 -78445236 - B1_Mur4 SINE Alu -1 149 3 1 1150 366 91 0 0 chr5 74093607 74093662 -78443597 + (GA)n Simple_repeat Simple_repeat 2 56 0 1 1150 277 29 0 0 chr5 74093940 74093975 -78443284 - U2 snRNA snRNA -153 35 1 1 1150 773 226 0 25 chr5 74094435 74094598 -78442661 + B3A SINE B2 2 160 -38 1 1150 234 0 0 0 chr5 74094610 74094636 -78442623 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1150 225 277 22 55 chr5 74096147 74096242 -78441017 + L2a LINE L2 3263 3400 -26 1 1150 608 260 72 10 chr5 74097401 74097595 -78439664 - RMER1B Other Other 0 1066 861 1 1150 408 71 0 0 chr5 74098460 74098516 -78438743 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 1 1150 432 0 0 0 chr5 74099264 74099312 -78437947 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1150 801 232 112 10 chr5 74099380 74099576 -78437683 + B3 SINE B2 1 216 0 1 1150 2757 305 86 20 chr5 74099588 74100017 -78437242 + Lx8 LINE L1 6241 6710 -763 1 1150 356 0 23 0 chr5 74100017 74100061 -78437198 + (TGGGGG)n Simple_repeat Simple_repeat 1 45 0 1 1150 2757 305 86 20 chr5 74100061 74100744 -78436515 + Lx8 LINE L1 6711 7426 -47 1 1150 235 229 143 12 chr5 74101026 74101055 -78436204 - L1MA5 LINE L1 -356 5944 5914 1 1150 870 76 0 0 chr5 74101055 74101174 -78436085 + (GGGAGA)n Simple_repeat Simple_repeat 1 119 0 1 1150 235 229 143 12 chr5 74101174 74101228 -78436031 - L1MA5 LINE L1 -387 5913 5850 1 1150 558 311 77 26 chr5 74101464 74101774 -78435485 - L1ME1 LINE L1 -81 6271 5946 1 1150 625 287 194 26 chr5 74102106 74102715 -78434544 - L1ME1 LINE L1 -2108 4211 3501 1 1150 301 319 12 64 chr5 74102992 74103163 -78434096 - L1ME1 LINE L1 -6199 201 40 1 1150 417 39 0 0 chr5 74103529 74103580 -78433679 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1150 225 0 0 0 chr5 74103580 74103604 -78433655 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1150 887 248 26 82 chr5 74103615 74103918 -78433341 - B4A SINE B4 0 292 7 1 1150 189 0 0 0 chr5 74104635 74104656 -78432603 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1150 4283 197 52 69 chr5 74104723 74105480 -78431779 + Lx7 LINE L1 6666 7404 -292 1 1150 432 0 0 0 chr5 74105480 74105528 -78431731 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1150 4283 197 52 69 chr5 74105528 74105799 -78431460 + Lx7 LINE L1 7405 7677 -19 1 1150 234 0 0 0 chr5 74105946 74105972 -78431287 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1150 472 375 118 27 chr5 74107006 74107335 -78429924 - MER115 DNA Tip100 -324 369 11 1 1150 282 250 12 12 chr5 74107408 74107489 -78429770 - MLT1A1 LTR MaLR -21 387 307 1 1150 522 0 0 0 chr5 74108039 74108097 -78429162 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1150 274 162 0 93 chr5 74109975 74110050 -78427209 - MLT1A1 LTR MaLR -2 406 339 1 1150 516 318 13 13 chr5 74110055 74110211 -78427048 + RSINE1 SINE B4 8 163 -2 1 1150 182 108 0 51 chr5 74110212 74110251 -78427008 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1 1150 315 149 0 0 chr5 74111508 74111582 -78425677 + (TCTG)n Simple_repeat Simple_repeat 4 77 0 1 1150 478 313 116 57 chr5 74111747 74112119 -78425140 + LTR16C LTR ERVL 94 487 -2 1 1150 392 229 0 103 chr5 74112276 74112383 -78424876 + MT2B LTR ERVL 157 252 -349 1 1150 710 180 23 0 chr5 74112293 74112421 -78424838 + B1_Mus1 SINE Alu 8 138 -10 1 1150 396 0 0 0 chr5 74112421 74112465 -78424794 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1150 22 70 0 0 chr5 74112895 74112938 -78424321 + AT_rich Low_complexity Low_complexity 1 43 0 1 1150 1167 158 19 23 chr5 74113660 74113864 -78423395 + B3 SINE B2 4 206 -10 1 1150 270 81 0 0 chr5 74113864 74113901 -78423358 + (TGG)n Simple_repeat Simple_repeat 1 37 0 1 1150 605 228 7 22 chr5 74114307 74114446 -78422813 + ID_B1 SINE B4 79 215 -9 1 1150 222 37 0 0 chr5 74115020 74115047 -78422212 + (TGG)n Simple_repeat Simple_repeat 3 29 0 1 1150 360 0 0 0 chr5 74115047 74115087 -78422172 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1150 529 259 7 22 chr5 74115087 74115225 -78422034 - ID_B1 SINE B4 -10 214 79 1 1150 905 284 82 53 chr5 74116299 74116940 -78420319 + L1M4 LINE L1 4798 5468 -706 1 1150 747 173 0 0 chr5 74116941 74117080 -78420179 + CT-rich Low_complexity Low_complexity 2 140 0 1 1150 203 88 29 0 chr5 74118029 74118063 -78419196 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1150 1069 301 46 33 chr5 74118090 74118572 -78418687 - L1MB5 LINE L1 -15 6159 5672 1 1150 209 339 0 0 chr5 74119704 74119766 -78417493 + (TATG)n Simple_repeat Simple_repeat 4 65 0 1 1150 267 305 51 31 chr5 74120167 74120265 -78416994 + PB1D7 SINE Alu 21 120 0 1 1150 1105 64 21 0 chr5 74120555 74120696 -78416563 + B1_Mus1 SINE Alu 2 145 -3 1 1150 681 47 0 0 chr5 74122217 74122302 -78414957 + (TC)n Simple_repeat Simple_repeat 2 86 0 1 1150 270 73 0 0 chr5 74122314 74122355 -78414904 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1 1150 225 0 0 0 chr5 74122459 74122484 -78414775 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1150 504 165 0 0 chr5 74123119 74123210 -78414049 + T-rich Low_complexity Low_complexity 1 91 0 2 1150 263 205 289 0 chr5 74123524 74123607 -78413652 - MIR3 SINE MIR -21 187 81 2 1150 523 200 30 8 chr5 74124779 74124910 -78412349 - ORR1D2 LTR MaLR -236 134 1 2 1150 385 250 0 0 chr5 74125184 74125264 -78411995 - ID4 SINE ID -1 82 3 2 1150 441 0 0 0 chr5 74125285 74125334 -78411925 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1150 762 214 18 67 chr5 74125368 74125422 -78411837 + B3 SINE B2 3 48 -168 2 1150 745 225 0 7 chr5 74125422 74125565 -78411694 - B1_Mur4 SINE Alu -6 144 3 2 1150 762 214 18 67 chr5 74125565 74125735 -78411524 + B3 SINE B2 49 215 -1 2 1150 23 33 0 0 chr5 74126209 74126239 -78411020 + AT_rich Low_complexity Low_complexity 1 30 0 2 1150 1013 293 64 7 chr5 74127284 74127690 -78409569 + L1MA6 LINE L1 5843 6271 -29 2 1150 564 216 0 0 chr5 74128046 74128157 -78409102 + PB1D9 SINE Alu 2 112 -8 2 1150 972 106 0 0 chr5 74128157 74128318 -78408941 + (CCAA)n Simple_repeat Simple_repeat 2 162 0 2 1150 413 226 102 29 chr5 74128410 74128547 -78408712 + B3A SINE B2 49 195 -3 2 1150 224 189 0 54 chr5 74128644 74128700 -78408559 + C-rich Low_complexity Low_complexity 2 54 0 2 1150 227 372 82 8 chr5 74128895 74129163 -78408096 - L1M5 LINE L1 -249 5875 5588 2 1150 830 221 43 29 chr5 74130188 74130398 -78406861 + B3 SINE B2 4 216 0 2 1150 1216 29 0 0 chr5 74130410 74130548 -78406711 + B1_Mm SINE Alu 1 138 -9 2 1150 279 0 0 0 chr5 74130548 74130579 -78406680 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1150 1316 226 60 75 chr5 74130717 74131185 -78406074 - RMER6B LTR ERVK 0 461 1 2 1150 288 0 0 0 chr5 74131691 74131723 -78405536 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 1150 375 42 0 0 chr5 74131723 74131771 -78405488 - B1_Mus2 SINE Alu -12 135 88 2 1150 886 237 37 71 chr5 74131904 74132172 -78405087 - B4 SINE B4 -32 260 2 2 1150 231 342 0 0 chr5 74133363 74133442 -78403817 - ID4 SINE ID -2 81 3 2 1150 400 261 44 32 chr5 74133579 74133737 -78403522 - RMER15 LTR ERVL -13 562 403 2 1150 227 324 35 53 chr5 74133978 74134092 -78403167 - Lx8 LINE L1 -301 7172 7061 2 1150 317 333 74 56 chr5 74134335 74134551 -78402708 + MT2A LTR ERVL 188 407 -126 2 1150 235 200 0 0 chr5 74134592 74134642 -78402617 + MT2A LTR ERVL 484 533 0 2 1150 337 301 17 0 chr5 74135158 74135331 -78401928 + (CACAG)n Simple_repeat Simple_repeat 2 177 0 2 1150 345 348 0 0 chr5 74135324 74135502 -78401757 + (CACAC)n Simple_repeat Simple_repeat 1 178 0 2 1150 426 20 0 0 chr5 74136382 74136433 -78400826 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1150 347 209 171 9 chr5 74136433 74136544 -78400715 - B4A SINE B4 -23 269 141 2 1150 720 104 0 0 chr5 74138867 74138992 -78398267 + (CCAA)n Simple_repeat Simple_repeat 2 126 0 2 1150 269 345 156 22 chr5 74139650 74139881 -78397378 + MER74A LTR ERVL 243 504 -54 2 1150 315 0 0 0 chr5 74139938 74139973 -78397286 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1150 226 225 26 51 chr5 74140023 74140140 -78397119 + (TATAA)n Simple_repeat Simple_repeat 4 117 0 2 1150 264 122 0 0 chr5 74140591 74140632 -78396627 + (TCCC)n Simple_repeat Simple_repeat 3 43 0 2 1150 360 279 113 14 chr5 74141717 74141859 -78395400 - MER20 DNA MER1_type -33 186 31 2 1150 239 310 38 161 chr5 74142367 74142659 -78394600 + MLT1K LTR MaLR 331 586 -9 2 1150 270 0 0 0 chr5 74142949 74142979 -78394280 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1150 221 228 0 81 chr5 74143357 74143419 -78393840 - L3 LINE CR1 -472 4017 3961 2 1150 297 248 58 29 chr5 74144139 74144243 -78393016 - MIRb SINE MIR -108 160 54 2 1150 2211 164 2 5 chr5 74144529 74144922 -78392337 + MTC LTR MaLR 5 396 -25 2 1150 207 306 12 12 chr5 74145161 74145247 -78392012 + GA-rich Low_complexity Low_complexity 2 87 0 2 1150 1229 84 0 11 chr5 74146043 74146224 -78391035 + (GAA)n Simple_repeat Simple_repeat 1 179 0 2 1150 511 174 0 52 chr5 74146505 74146620 -78390639 - B1_Mur1 SINE Alu 0 149 41 2 1150 239 382 155 5 chr5 74148263 74148450 -78388809 + MIR SINE MIR 27 241 -21 2 1150 180 0 0 0 chr5 74148764 74148784 -78388475 + (CTG)n Simple_repeat Simple_repeat 1 20 0 2 1150 306 0 0 0 chr5 74148987 74149021 -78388238 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1150 234 81 0 0 chr5 74150869 74150906 -78386353 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1150 369 224 0 0 chr5 74151501 74151657 -78385602 + (TCTG)n Simple_repeat Simple_repeat 2 157 0 2 1150 180 176 0 0 chr5 74151764 74151798 -78385461 + CT-rich Low_complexity Low_complexity 4 37 0 2 1150 271 119 33 17 chr5 74152160 74152178 -78385081 + polypyrimidine Low_complexity Low_complexity 47 64 0 2 1150 1200 111 0 0 chr5 74152178 74152358 -78384901 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1150 271 119 33 17 chr5 74152358 74152399 -78384860 + polypyrimidine Low_complexity Low_complexity 5 46 0 2 1150 243 127 48 0 chr5 74152412 74152475 -78384784 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1150 460 299 31 95 chr5 74152475 74152504 -78384755 + ORR1E LTR MaLR 29 57 -302 2 1150 543 43 0 0 chr5 74152504 74152574 -78384685 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1150 460 299 31 95 chr5 74152574 74152766 -78384493 + ORR1E LTR MaLR 58 236 -123 2 1150 1123 122 164 0 chr5 74153593 74153782 -78383477 - URR1A DNA MER1_type -2 224 5 2 1150 241 262 7 0 chr5 74154290 74154353 -78382906 - L2b LINE L2 -9 3417 3306 2 1150 399 264 0 18 chr5 74154396 74154508 -78382751 + Lx5 LINE L1 6149 6258 -792 2 1150 513 197 75 90 chr5 74154597 74154731 -78382528 + B1_Mur2 SINE Alu 8 139 -10 2 1150 342 0 0 0 chr5 74154731 74154769 -78382490 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1150 243 125 0 0 chr5 74154782 74154822 -78382437 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1150 1661 74 9 0 chr5 74155477 74155694 -78381565 - Lx4A LINE L1 -379 6679 6461 2 1150 1859 141 7 0 chr5 74155696 74155979 -78381280 + Lx4A LINE L1 6774 7058 0 2 1150 30 27 0 0 chr5 74155979 74156016 -78381243 + AT_rich Low_complexity Low_complexity 1 37 0 2 1150 332 333 111 0 chr5 74156161 74156305 -78380954 - MIR SINE MIR -102 160 1 2 1150 1276 169 14 5 chr5 74157049 74157269 -78379990 + URR1A DNA MER1_type 5 226 0 2 1150 318 348 82 25 chr5 74157488 74157647 -78379612 - MIR SINE MIR -92 176 9 2 1150 258 315 41 27 chr5 74157784 74157931 -78379328 - MER53 DNA hAT -5 188 40 2 1150 504 0 0 0 chr5 74158093 74158149 -78379110 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1150 898 153 19 0 chr5 74158441 74158598 -78378661 + URR1A DNA MER1_type 56 215 -11 2 1150 453 257 0 0 chr5 74159027 74159163 -78378096 + (TG)n Simple_repeat Simple_repeat 1 136 0 2 1150 21 0 0 0 chr5 74159307 74159328 -78377931 + AT_rich Low_complexity Low_complexity 1 21 0 2 1150 226 319 0 19 chr5 74160520 74160615 -78376644 + L2c LINE L2 3212 3329 -58 2 1150 198 296 141 23 chr5 74161447 74161575 -78375684 - L2b LINE L2 -26 3349 3207 2 1150 4428 183 47 31 chr5 74162241 74163129 -78374130 - Lx6 LINE L1 -958 6502 5601 2 1150 1836 112 9 78 chr5 74163129 74163477 -78373782 + ORR1A4 LTR MaLR 1 324 -5 2 1150 1059 335 81 7 chr5 74163898 74164340 -78372919 - MTE-int LTR MaLR -152 1428 954 2 1150 207 0 0 0 chr5 74164441 74164464 -78372795 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1150 1140 303 110 2 chr5 74164479 74164879 -78372380 - MTE-int LTR MaLR -1114 466 24 2 1150 292 275 118 86 chr5 74165077 74165264 -78371995 - ORR1E LTR MaLR -164 195 3 2 1150 24 0 0 0 chr5 74165316 74165340 -78371919 + AT_rich Low_complexity Low_complexity 1 24 0 2 1150 1112 195 127 46 chr5 74165447 74165754 -78371505 - IAPEY3_LTR LTR ERVK 0 332 1 2 1150 717 238 99 11 chr5 74165780 74165971 -78371288 + B3 SINE B2 3 210 -6 2 1150 448 272 131 128 chr5 74169963 74170194 -78367065 + MLT2B2 LTR ERVL 241 470 -45 2 1150 252 86 0 0 chr5 74170194 74170229 -78367030 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2 1150 448 272 131 128 chr5 74170229 74170271 -78366988 + MLT2B2 LTR ERVL 471 514 -1 2 1150 22 70 0 0 chr5 74171336 74171379 -78365880 + AT_rich Low_complexity Low_complexity 1 43 0 2 1150 730 124 11 73 chr5 74171429 74171620 -78365639 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1150 220 276 47 66 chr5 74171949 74172089 -78365170 + MIRb SINE MIR 52 197 -71 2 1150 510 205 335 23 chr5 74172929 74173096 -78364163 - ORR1E LTR MaLR -82 297 79 2 1150 383 20 0 0 chr5 74173116 74173165 -78364094 + B2_Mm2 SINE B2 45 93 -102 2 1150 270 243 13 63 chr5 74173165 74173244 -78364015 - RMER10A LTR ERVL -356 86 12 2 1150 1354 138 18 9 chr5 74176235 74176454 -78360805 - URR1B DNA MER1_type 0 225 5 2 1150 1045 273 43 62 chr5 74176466 74176837 -78360422 + MTE2b LTR MaLR 16 379 0 2 1150 418 279 86 11 chr5 74177221 74177395 -78359864 - MER58B DNA MER1_type -83 258 72 2 1150 1266 280 144 28 chr5 74179806 74179911 -78357348 - Lx8 LINE L1 0 7473 7365 2 1150 1201 128 16 0 chr5 74179911 74180099 -78357160 - B2_Mm2 SINE B2 -4 191 1 2 1150 576 0 0 0 chr5 74180101 74180165 -78357094 + (TTTTG)n Simple_repeat Simple_repeat 3 66 0 2 1150 1266 280 144 28 chr5 74180165 74180529 -78356730 - Lx8 LINE L1 -109 7364 6954 2 1150 282 307 180 46 chr5 74182286 74182614 -78354645 - L1MC5 LINE L1 -888 7073 6702 2 1150 246 204 41 0 chr5 74182824 74182873 -78354386 - ID4_ SINE ID -2 81 31 2 1150 280 266 0 11 chr5 74184173 74184244 -78353015 - ID4_ SINE ID -75 77 10 2 1150 320 278 99 11 chr5 74184270 74184361 -78352898 - B1F SINE Alu -15 134 36 2 1150 717 67 0 0 chr5 74184369 74184473 -78352786 + (CAACC)n Simple_repeat Simple_repeat 5 108 0 3 1150 24 53 0 0 chr5 74184505 74184543 -78352716 + AT_rich Low_complexity Low_complexity 1 38 0 3 1150 999 241 0 23 chr5 74184801 74185022 -78352237 + B3 SINE B2 1 216 0 3 1150 1500 235 45 17 chr5 74185341 74185700 -78351559 - MTE2b LTR MaLR -1 378 10 3 1150 201 241 186 21 chr5 74185777 74185917 -78351342 - MER5A DNA MER1_type -26 163 1 3 1151 182 118 0 29 chr5 74187293 74187328 -78349931 + (CATATA)n Simple_repeat Simple_repeat 6 39 0 3 1151 270 0 0 0 chr5 74187358 74187388 -78349871 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1151 349 299 55 55 chr5 74187936 74188173 -78349086 - MLT1A0 LTR MaLR -16 349 113 3 1151 582 232 0 40 chr5 74188167 74188315 -78348944 + B4 SINE B4 151 292 0 3 1151 436 299 132 0 chr5 74188345 74188519 -78348740 - Arthur1 DNA Tip100 -3280 667 471 3 1151 736 280 31 10 chr5 74188735 74188930 -78348329 + ORR1E LTR MaLR 38 236 -123 3 1151 280 263 0 0 chr5 74189751 74189827 -78347432 - MLT1A1 LTR MaLR -27 381 306 3 1151 354 235 0 0 chr5 74192329 74192431 -78344828 + (ATG)n Simple_repeat Simple_repeat 3 104 0 3 1151 468 0 0 0 chr5 74192485 74192537 -78344722 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1151 353 237 55 9 chr5 74193071 74193216 -78344043 - MTD LTR MaLR -14 405 235 3 1151 559 247 136 74 chr5 74193294 74193552 -78343707 - MTD LTR MaLR -145 274 1 3 1151 832 256 153 20 chr5 74193561 74194409 -78342850 - L1MD2 LINE L1 -179 5995 5010 3 1151 2947 172 99 4 chr5 74194426 74194521 -78342738 - RMER1A Other Other -19 1011 874 3 1151 360 0 0 0 chr5 74194521 74194561 -78342698 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1151 2947 172 99 4 chr5 74194561 74195008 -78342251 - RMER1A Other Other -157 873 418 3 1151 203 255 0 0 chr5 74195010 74195057 -78342202 + (CTCTG)n Simple_repeat Simple_repeat 2 48 0 3 1151 312 281 0 0 chr5 74195057 74195235 -78342024 + (CCCTG)n Simple_repeat Simple_repeat 2 179 0 3 1151 229 286 0 0 chr5 74195241 74195318 -78341941 + CT-rich Low_complexity Low_complexity 1 77 0 3 1151 1709 255 94 45 chr5 74195323 74196029 -78341230 - RMER1A Other Other -474 592 8 3 1151 569 229 8 14 chr5 74196279 74196436 -78340823 + ORR1D1 LTR MaLR 3 149 -245 3 1151 868 267 108 4 chr5 74196478 74196756 -78340503 + ERVL-B4-int LTR ERVL 1735 2041 -3673 3 1151 1318 278 75 38 chr5 74196752 74197087 -78340172 + ERVL-B4-int LTR ERVL 2389 2739 -2975 3 1151 979 270 14 21 chr5 74197087 74197367 -78339892 + B4A SINE B4 5 282 -10 3 1151 1318 278 75 38 chr5 74197367 74197552 -78339707 + ERVL-B4-int LTR ERVL 2740 2928 -2786 3 1151 239 289 81 37 chr5 74197996 74198134 -78339125 - L1MD2 LINE L1 -1158 4988 4845 3 1151 480 324 0 0 chr5 74198166 74198345 -78338914 + GA-rich Low_complexity Low_complexity 1 179 0 3 1151 449 179 126 0 chr5 74198365 74198460 -78338799 + B1_Mur1 SINE Alu 42 148 -1 3 1151 387 0 0 0 chr5 74198540 74198583 -78338676 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1151 432 248 101 11 chr5 74198587 74198812 -78338447 - L1MD2 LINE L1 -1712 4434 4184 3 1151 257 278 42 0 chr5 74198822 74198894 -78338365 - L1MD LINE L1 -2013 4133 4059 3 1151 592 227 45 0 chr5 74198936 74199068 -78338191 - B1_Mus1 SINE Alu 0 148 11 3 1151 22 35 0 0 chr5 74199295 74199324 -78337935 + AT_rich Low_complexity Low_complexity 1 29 0 3 1151 530 264 28 0 chr5 74199353 74199497 -78337762 - B1F SINE Alu 0 149 2 3 1151 213 156 22 0 chr5 74200060 74200105 -78337154 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 3 1151 1296 14 0 0 chr5 74200668 74200812 -78336447 + B1_Mm SINE Alu 4 147 0 3 1151 189 0 0 0 chr5 74200812 74200833 -78336426 + (CAAAAA)n Simple_repeat Simple_repeat 6 26 0 3 1151 561 234 193 0 chr5 74200928 74201099 -78336160 + B3 SINE B2 2 205 -11 3 1151 1425 236 128 0 chr5 74201799 74202159 -78335100 + MTD LTR MaLR 3 408 -11 3 1151 315 0 0 0 chr5 74202815 74202850 -78334409 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 1151 413 36 18 0 chr5 74202850 74202904 -78334355 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1151 186 245 0 20 chr5 74203068 74203118 -78334141 - L2c LINE L2 -59 3328 3280 3 1151 356 0 23 0 chr5 74203170 74203214 -78334045 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1151 450 0 0 0 chr5 74203214 74203263 -78333996 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1151 27 49 0 0 chr5 74203785 74203826 -78333433 + AT_rich Low_complexity Low_complexity 1 41 0 3 1151 1584 155 114 0 chr5 74203843 74204140 -78333119 - Lx5 LINE L1 -376 6674 6344 3 1151 371 268 21 0 chr5 74204156 74204253 -78333006 - MTEb LTR MaLR -21 358 260 3 1151 2707 165 68 15 chr5 74204262 74204474 -78332785 + RMER15 LTR ERVL 1 216 -359 3 1151 662 0 0 13 chr5 74204474 74204553 -78332706 + (GAA)n Simple_repeat Simple_repeat 3 80 0 3 1151 2707 165 68 15 chr5 74204553 74204707 -78332552 + RMER15 LTR ERVL 217 396 -179 3 1151 4672 141 11 3 chr5 74204707 74205421 -78331838 - RMER6D LTR ERVK 0 720 1 3 1151 2707 165 68 15 chr5 74205421 74205581 -78331678 + RMER15 LTR ERVL 397 555 -20 3 1151 526 312 125 5 chr5 74205577 74205793 -78331466 - MTEb LTR MaLR -125 254 13 3 1151 243 313 0 0 chr5 74205794 74205861 -78331398 - B3A SINE B2 -131 67 1 3 1151 958 315 38 18 chr5 74205886 74206377 -78330882 + L1M2 LINE L1 4612 5078 -805 3 1151 1218 300 41 2 chr5 74206399 74206793 -78330466 + Lx8 LINE L1 6762 7170 -303 3 1151 4050 152 179 25 chr5 74206793 74207630 -78329629 - RLTR25A LTR ERVK 0 1103 117 3 1151 225 0 0 0 chr5 74207630 74207655 -78329604 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1151 4050 152 179 25 chr5 74207655 74207773 -78329486 - RLTR25A LTR ERVK -987 116 1 3 1151 578 325 6 18 chr5 74207773 74207939 -78329320 + Lx8 LINE L1 7165 7328 -145 3 1151 895 215 33 61 chr5 74207944 74207979 -78329280 - B3 SINE B2 -4 212 189 3 1151 380 104 0 15 chr5 74207979 74208047 -78329212 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1151 895 215 33 61 chr5 74208047 74208224 -78329035 - B3 SINE B2 -28 188 6 3 1151 999 101 35 0 chr5 74208928 74209097 -78328162 + (TATG)n Simple_repeat Simple_repeat 4 178 0 3 1151 850 239 34 15 chr5 74210231 74210435 -78326824 - B3 SINE B2 -7 209 2 3 1151 264 323 117 17 chr5 74211456 74211695 -78325564 + L1M5 LINE L1 4543 4805 -1341 3 1151 619 299 79 54 chr5 74211916 74212270 -78324989 - MLT1F2 LTR MaLR -197 363 1 3 1151 289 343 66 38 chr5 74212418 74212630 -78324629 + MIR SINE MIR 33 250 -12 3 1151 574 266 73 0 chr5 74212771 74212948 -78324311 + RCHARR1 DNA MER1_type 6 195 -779 3 1151 710 216 36 16 chr5 74212929 74212951 -78324308 + RCHARR1 DNA MER1_type 302 328 -646 3 1151 219 114 0 0 chr5 74212951 74212986 -78324273 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1151 710 216 36 16 chr5 74212986 74213156 -78324103 + RCHARR1 DNA MER1_type 329 497 -477 3 1151 2111 218 30 92 chr5 74213641 74214232 -78323027 + RMER1B Other Other 1 536 -530 3 1151 3727 187 80 21 chr5 74214237 74215114 -78322145 + RMER1A Other Other 216 1017 -13 3 1151 525 236 78 31 chr5 74215115 74215467 -78321792 + RCHARR1 DNA MER1_type 518 940 -34 3 1151 2539 279 167 24 chr5 74216283 74216794 -78320465 - Lx8 LINE L1 -165 7308 6707 3 1151 1462 50 0 16 chr5 74216794 74216978 -78320281 + B2_Mm2 SINE B2 1 181 -14 3 1151 2539 271 114 28 chr5 74216978 74217384 -78319875 - Lx8 LINE L1 -767 6706 6283 3 1151 210 273 0 15 chr5 74218664 74218731 -78318528 + A-rich Low_complexity Low_complexity 5 70 0 3 1151 238 319 60 0 chr5 74219011 74219140 -78318119 + MIRb SINE MIR 18 148 -60 3 1151 217 222 36 18 chr5 74219141 74219196 -78318063 + GA-rich Low_complexity Low_complexity 5 60 0 3 1151 513 0 0 0 chr5 74219267 74219324 -78317935 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1151 563 164 182 0 chr5 74219332 74219442 -78317817 - B3 SINE B2 -86 130 1 3 1151 1157 235 56 13 chr5 74219928 74220242 -78317017 + MTE2b LTR MaLR 10 334 -45 3 1151 922 270 5 0 chr5 74220239 74220450 -78316809 - ORR1D2 LTR MaLR -158 212 1 3 1151 314 252 55 30 chr5 74220578 74220742 -78316517 - MTE2a LTR MaLR 0 419 253 3 1151 189 0 0 0 chr5 74221494 74221515 -78315744 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1151 487 223 194 10 chr5 74222685 74222905 -78314354 - Lx9 LINE L1 -1681 5963 5667 3 1151 242 67 0 0 chr5 74222985 74223015 -78314244 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 3 1151 528 126 0 0 chr5 74223018 74223105 -78314154 + (GGAA)n Simple_repeat Simple_repeat 4 90 0 3 1151 320 142 75 0 chr5 74223106 74223212 -78314047 + (TAGA)n Simple_repeat Simple_repeat 3 116 0 3 1151 22 0 0 0 chr5 74223230 74223252 -78314007 + AT_rich Low_complexity Low_complexity 1 22 0 3 1151 201 154 0 0 chr5 74225551 74225590 -78311669 + T-rich Low_complexity Low_complexity 2 40 0 3 1151 386 275 79 96 chr5 74225758 74225935 -78311324 + MER20 DNA MER1_type 31 204 -15 3 1151 195 42 0 0 chr5 74226143 74226167 -78311092 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1151 391 252 29 10 chr5 74226206 74226310 -78310949 + PB1D10 SINE Alu 5 110 -7 3 1151 730 300 70 0 chr5 74226323 74226400 -78310859 + B4 SINE B4 4 80 -212 3 1151 465 19 0 0 chr5 74226400 74226454 -78310805 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1151 730 300 70 0 chr5 74226454 74226646 -78310613 + B4 SINE B4 81 291 -1 3 1151 234 0 0 0 chr5 74226648 74226674 -78310585 + (CCA)n Simple_repeat Simple_repeat 1 26 0 3 1151 610 196 15 8 chr5 74226762 74226896 -78310363 - ORR1D2 LTR MaLR -235 135 1 3 1151 1196 287 106 41 chr5 74226911 74227448 -78309811 + Lx8 LINE L1 6623 7194 -279 3 1151 590 104 10 0 chr5 74227650 74227746 -78309513 + (GA)n Simple_repeat Simple_repeat 1 97 0 3 1151 34262 67 2 5 chr5 74227820 74232967 -78304292 + L1Md_F2 LINE L1 458 5586 -297 3 1151 8476 32 4 3 chr5 74232967 74233960 -78303299 + L1Md_F2 LINE L1 5587 6580 -2 3 1151 2830 172 186 21 chr5 74234728 74234849 -78302410 - RMER1B Other Other -5 1061 945 3 1151 420 20 0 0 chr5 74234849 74234898 -78302361 + (CAA)n Simple_repeat Simple_repeat 3 51 0 3 1151 2830 172 186 21 chr5 74234898 74235398 -78301861 - RMER1B Other Other -122 944 338 3 1151 601 264 47 42 chr5 74235586 74235776 -78301483 + B3A SINE B2 3 193 -5 3 1151 512 287 47 28 chr5 74235832 74236047 -78301212 - L1MA4 LINE L1 -387 5913 5695 3 1151 406 252 81 76 chr5 74236382 74236592 -78300667 + RMER2 LTR ERV1 334 544 -23 3 1151 295 314 133 47 chr5 74236662 74237046 -78300213 + L1MA9 LINE L1 5891 6307 -5 3 1151 236 321 71 64 chr5 74238701 74238841 -78298418 - B4 SINE B4 -85 207 67 3 1151 356 0 23 0 chr5 74238848 74238892 -78298367 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1151 348 267 128 43 chr5 74239398 74239586 -78297673 - MIR SINE MIR -56 206 3 3 1151 579 237 62 35 chr5 74239843 74239987 -78297272 - RSINE1 SINE B4 -12 153 6 3 1151 493 278 20 7 chr5 74240784 74240936 -78296323 + MER5B DNA MER1_type 9 162 -16 3 1151 1006 58 0 21 chr5 74241205 74241345 -78295914 + B1_Mus1 SINE Alu 10 146 -2 4 1151 611 265 81 0 chr5 74241577 74241737 -78295522 + B3 SINE B2 2 166 -50 4 1151 180 0 0 0 chr5 74241737 74241757 -78295502 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1151 611 264 86 0 chr5 74241757 74241795 -78295464 + B3 SINE B2 167 215 -1 4 1151 440 264 43 16 chr5 74242450 74242625 -78294634 + B4A SINE B4 7 188 -104 4 1151 388 184 10 10 chr5 74242679 74242778 -78294481 + (CATATA)n Simple_repeat Simple_repeat 1 99 0 4 1151 237 246 53 53 chr5 74242778 74242911 -78294348 - RMER12 LTR ERVK -476 846 714 4 1151 1023 238 165 6 chr5 74242856 74243195 -78294064 + RMER20A LTR ERVK 61 453 -63 4 1151 988 22 10 78 chr5 74243208 74243401 -78293858 + (TC)n Simple_repeat Simple_repeat 1 180 0 4 1151 560 48 67 0 chr5 74243422 74243527 -78293732 + (TC)n Simple_repeat Simple_repeat 1 112 0 4 1151 1234 41 0 0 chr5 74243608 74243754 -78293505 - B1_Mus2 SINE Alu 0 147 2 4 1151 221 326 36 43 chr5 74244205 74244343 -78292916 - L2 LINE L2 -512 2907 2771 4 1151 406 316 33 33 chr5 74244788 74245001 -78292258 + Tigger5 DNA MER2_type 2182 2394 -12 4 1151 21 0 0 0 chr5 74245101 74245122 -78292137 + AT_rich Low_complexity Low_complexity 1 21 0 4 1151 425 304 59 40 chr5 74245247 74245449 -78291810 + B4 SINE B4 1 206 -86 4 1151 513 279 0 0 chr5 74247057 74247179 -78290080 - B1_Mur1 SINE Alu -23 126 5 4 1151 1139 214 62 45 chr5 74247511 74247821 -78289438 + ORR1C1 LTR MaLR 1 339 -39 4 1151 8234 95 49 5 chr5 74247821 74249722 -78287537 + L1_Mus3 LINE L1 4485 6638 0 4 1151 1720 159 107 0 chr5 74249925 74250234 -78287025 + RMER1B Other Other 45 386 -680 4 1151 1555 153 15 96 chr5 74250247 74250736 -78286523 - RMER17C LTR ERVK -519 439 16 4 1151 512 222 128 0 chr5 74250736 74250853 -78286406 + RMER1A Other Other 21 152 -878 4 1151 2558 28 15 0 chr5 74250992 74251318 -78285941 - IAPEY_LTR LTR ERVK 0 385 55 4 1151 1672 280 141 23 chr5 74251329 74252419 -78284840 - L1MDa LINE L1 -2766 3771 2553 4 1151 2014 138 12 93 chr5 74252573 74252981 -78284278 - ORR1B1 LTR MaLR 0 394 20 4 1151 539 210 77 36 chr5 74252984 74253152 -78284107 - L1MDa LINE L1 -4341 2292 2118 4 1151 817 147 0 0 chr5 74253164 74253293 -78283966 + RMER15 LTR ERVL 427 555 -20 4 1151 229 182 0 22 chr5 74253632 74253677 -78283582 - MER21B LTR ERV1 -779 84 41 4 1151 519 283 92 30 chr5 74253843 74254171 -78283088 - L1MDa LINE L1 -4577 2056 1709 4 1151 495 0 0 0 chr5 74255960 74256015 -78281244 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1151 283 288 53 118 chr5 74256223 74256546 -78280713 - RMER17C LTR ERVK -81 329 28 4 1151 3931 175 82 55 chr5 74256593 74257544 -78279715 - RMER17C-int LTR ERVK 0 3238 2262 4 1151 9118 7 0 0 chr5 74257567 74259234 -78278025 - L1Md_A LINE L1 0 6582 4916 4 1151 254 159 12 138 chr5 74259345 74259425 -78277834 - RMER17C-int LTR ERVK -3839 2298 2229 4 1151 442 262 21 174 chr5 74259467 74259841 -78277418 - RMER17C-int LTR ERVK -1800 1438 1122 4 1151 363 340 9 9 chr5 74260660 74260767 -78276492 + MER58A DNA MER1_type 26 132 -92 4 1151 244 172 46 15 chr5 74261028 74261093 -78276166 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 4 1151 468 0 0 0 chr5 74261264 74261316 -78275943 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1151 489 62 0 0 chr5 74263155 74263220 -78274039 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1151 1037 304 88 24 chr5 74263299 74263801 -78273458 - MER89 LTR ERV1 -9 550 17 4 1151 431 419 24 4 chr5 74264362 74264611 -78272648 - L4 LINE RTE -592 1437 1184 4 1151 520 311 36 68 chr5 74265038 74265259 -78272000 + MER20 DNA MER1_type 6 219 0 4 1151 1354 265 24 29 chr5 74265478 74265855 -78271404 - MTEa LTR MaLR -2 377 3 4 1151 187 300 50 0 chr5 74266240 74266300 -78270959 + MIR SINE MIR 197 259 -3 4 1151 366 219 0 0 chr5 74267862 74267944 -78269315 + MTEb LTR MaLR 154 235 -144 4 1151 310 252 93 0 chr5 74268332 74268439 -78268820 + HAL1 LINE L1 1394 1510 -997 4 1151 25 51 0 0 chr5 74268939 74268978 -78268281 + AT_rich Low_complexity Low_complexity 1 39 0 4 1151 684 186 0 39 chr5 74269068 74269197 -78268062 + B1_Mur3 SINE Alu 5 128 -21 4 1151 1696 31 0 0 chr5 74269207 74269400 -78267859 + B2_Mm1t SINE B2 1 193 0 4 1151 210 270 0 0 chr5 74269401 74269464 -78267795 + GA-rich Low_complexity Low_complexity 4 66 0 4 1151 229 26 53 0 chr5 74269472 74269510 -78267749 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 4 1151 677 88 10 0 chr5 74269511 74269613 -78267646 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 4 1151 283 93 19 0 chr5 74270480 74270534 -78266725 - U5 snRNA snRNA -61 55 1 4 1151 760 205 97 26 chr5 74270819 74271014 -78266245 - B3 SINE B2 -6 210 2 4 1151 430 245 30 26 chr5 74271149 74271305 -78265954 - MLT1B LTR MaLR -1 389 216 4 1151 226 252 144 48 chr5 74272707 74272811 -78264448 - MIRb SINE MIR -75 193 80 4 1151 204 40 0 0 chr5 74273752 74273777 -78263482 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1151 1967 133 94 14 chr5 74274526 74274876 -78262383 + ORR1C1 LTR MaLR 1 378 0 4 1151 753 153 6 13 chr5 74275036 74275195 -78262064 + (TA)n Simple_repeat Simple_repeat 2 159 0 4 1151 248 0 31 0 chr5 74275205 74275237 -78262022 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 4 1151 271 228 11 11 chr5 74275282 74275375 -78261884 + (TA)n Simple_repeat Simple_repeat 2 94 0 4 1151 330 209 93 110 chr5 74277662 74277780 -78259479 + PB1D10 SINE Alu 2 117 0 4 1151 24 0 0 0 chr5 74277791 74277815 -78259444 + AT_rich Low_complexity Low_complexity 1 24 0 4 1151 746 295 30 144 chr5 74278093 74278141 -78259118 - RLTR18B LTR ERVK -4 508 466 4 1151 5006 136 63 36 chr5 74278141 74278459 -78258800 + RLTR13D6 LTR ERVK 1 335 -567 4 1151 252 0 0 0 chr5 74278459 74278487 -78258772 + (G)n Simple_repeat Simple_repeat 1 28 0 4 1151 5006 136 63 36 chr5 74278487 74279047 -78258212 + RLTR13D6 LTR ERVK 336 902 0 4 1151 746 295 30 144 chr5 74279047 74279283 -78257976 - RLTR18B LTR ERVK -47 465 234 4 1151 1296 14 0 0 chr5 74279283 74279430 -78257829 + B1_Mm SINE Alu 1 147 0 4 1151 746 295 30 144 chr5 74279430 74279575 -78257684 - RLTR18B LTR ERVK -279 233 127 4 1151 804 206 41 31 chr5 74279709 74279904 -78257355 - RLTR18B LTR ERVK -311 201 5 4 1151 1044 218 5 0 chr5 74280328 74280530 -78256729 + B3 SINE B2 5 207 -9 4 1151 338 0 24 0 chr5 74280530 74280572 -78256687 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 4 1151 638 314 178 26 chr5 74281207 74281668 -78255591 - MER44B DNA MER2_type -16 534 4 4 1151 336 311 27 102 chr5 74281705 74281858 -78255401 - MLT1J LTR MaLR -340 172 33 4 1151 2048 142 3 6 chr5 74281858 74282170 -78255089 + RLTR10E LTR ERVK 1 311 0 4 1151 336 311 27 102 chr5 74282170 74282202 -78255057 - MLT1J LTR MaLR -480 32 1 4 1151 7311 71 132 2 chr5 74285702 74286688 -78250571 - RLTR13D3 LTR ERVK 0 1114 1 4 1151 270 159 0 0 chr5 74286736 74286780 -78250479 - RLTR24 LTR ERV1 -485 44 1 4 1151 620 362 42 39 chr5 74286780 74287090 -78250169 + MT2A LTR ERVL 109 419 -114 4 1151 258 250 25 0 chr5 74287120 74287200 -78250059 + (TA)n Simple_repeat Simple_repeat 1 82 0 4 1151 1139 248 16 43 chr5 74287406 74287709 -78249550 + MTE2a LTR MaLR 85 379 0 4 1151 278 258 186 39 chr5 74287867 74287880 -78249379 - B1F1 SINE Alu -1 148 140 4 1151 201 74 0 0 chr5 74287880 74287907 -78249352 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1151 278 258 186 39 chr5 74287907 74288022 -78249237 - B1F1 SINE Alu -10 139 1 4 1151 623 260 0 130 chr5 74288142 74288319 -78248940 + RSINE1 SINE B4 12 165 0 4 1151 500 261 8 30 chr5 74288335 74288469 -78248790 + B1F SINE Alu 18 148 -1 4 1151 1107 224 150 51 chr5 74289099 74289433 -78247826 + ORR1D2 LTR MaLR 3 369 -1 4 1151 1063 257 136 17 chr5 74291631 74291976 -78245283 + MTD LTR MaLR 19 404 -15 4 1151 348 274 172 45 chr5 74292025 74292292 -78244967 - L1MD3 LINE L1 -2111 5884 5584 4 1151 210 240 0 20 chr5 74292317 74292368 -78244891 + CT-rich Low_complexity Low_complexity 6 55 0 4 1151 625 253 67 21 chr5 74292425 74292663 -78244596 - L1MD3 LINE L1 -2564 3582 3334 4 1151 237 295 0 0 chr5 74292789 74292850 -78244409 + MT2A LTR ERVL 178 238 -295 4 1151 333 0 0 0 chr5 74293801 74293838 -78243421 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1151 324 267 2 5 chr5 74294831 74294923 -78242336 - B4 SINE B4 -72 93 3 4 1151 2477 83 9 6 chr5 74294925 74295251 -78242008 - ORR1A2 LTR MaLR 0 327 1 4 1151 768 293 32 35 chr5 74295347 74295630 -78241629 + MLT1A0 LTR MaLR 26 307 -58 4 1151 3129 23 2 116 chr5 74296062 74296500 -78240759 - RLTR10 LTR ERVK -2 388 1 4 1151 11454 89 57 62 chr5 74296502 74298457 -78238802 - RLTR10-int LTR ERVK -3 1984 40 4 1151 3310 21 2 42 chr5 74298468 74298872 -78238387 - RLTR10 LTR ERVK -2 388 1 4 1151 411 262 10 0 chr5 74299060 74299163 -78238096 + ID_B1 SINE B4 121 224 0 4 1151 264 282 141 28 chr5 74299563 74299818 -78237441 + L1M5 LINE L1 3566 3849 -2297 4 1151 331 326 82 58 chr5 74299945 74300359 -78236900 + L1MD LINE L1 4980 5403 -743 4 1151 239 208 19 0 chr5 74300437 74300490 -78236769 + L1MB8 LINE L1 5514 5567 -604 4 1151 359 261 60 108 chr5 74300578 74300934 -78236325 + RLTR11A2 LTR ERVK 2 354 -99 4 1151 260 237 0 0 chr5 74301133 74301192 -78236067 + L1MA5 LINE L1 6216 6274 -26 4 1151 389 201 258 45 chr5 74301200 74301420 -78235839 + L1MB8 LINE L1 5591 5857 -321 4 1151 408 88 0 0 chr5 74301482 74301539 -78235720 + (TCTCG)n Simple_repeat Simple_repeat 5 61 0 4 1151 591 157 26 0 chr5 74301539 74301645 -78235614 - B1_Mur2 SINE Alu -9 140 33 4 1151 25 31 0 0 chr5 74301653 74301685 -78235574 + AT_rich Low_complexity Low_complexity 1 32 0 4 1151 552 286 104 0 chr5 74301687 74301879 -78235380 - B3 SINE B2 -4 212 1 4 1151 344 223 200 32 chr5 74301893 74302083 -78235176 + L1MB8 LINE L1 5924 6145 -33 4 1151 869 270 93 7 chr5 74302126 74302338 -78234921 + B4A SINE B4 1 232 -60 4 1151 920 252 50 0 chr5 74302338 74302536 -78234723 + B3 SINE B2 2 209 -7 4 1151 869 270 93 7 chr5 74302536 74302592 -78234667 + B4A SINE B4 233 292 0 4 1151 2092 144 73 5 chr5 74302921 74303290 -78233969 - ORR1B1 LTR MaLR 0 394 1 4 1151 2377 107 0 21 chr5 74303675 74304009 -78233250 + ORR1A2 LTR MaLR 1 327 0 4 1151 795 289 146 20 chr5 74304056 74304494 -78232765 - MLT2B4 LTR ERVL -63 493 1 4 1151 198 0 0 0 chr5 74305506 74305528 -78231731 + (CAT)n Simple_repeat Simple_repeat 1 22 0 4 1151 202 200 0 62 chr5 74305532 74305580 -78231679 + C-rich Low_complexity Low_complexity 3 47 0 5 1151 468 0 0 0 chr5 74305821 74305873 -78231386 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1151 504 45 0 0 chr5 74305873 74305939 -78231320 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1151 33 66 0 0 chr5 74305959 74306020 -78231239 + AT_rich Low_complexity Low_complexity 1 61 0 5 1151 247 248 0 62 chr5 74306106 74306218 -78231041 + A-rich Low_complexity Low_complexity 4 108 0 5 1151 2924 261 22 11 chr5 74306225 74306919 -78230340 - Lx7 LINE L1 -417 7279 6579 5 1151 187 343 0 0 chr5 74307182 74307249 -78230010 + L2a LINE L2 3356 3422 -4 5 1151 941 267 109 7 chr5 74307395 74307818 -78229441 + L1MC2 LINE L1 5688 6153 -191 5 1151 31 26 0 0 chr5 74307900 74307938 -78229321 + AT_rich Low_complexity Low_complexity 1 38 0 5 1151 850 237 32 5 chr5 74308104 74308291 -78228968 + B3A SINE B2 1 192 -6 5 1151 1299 42 47 12 chr5 74308384 74308554 -78228705 + B2_Mm2 SINE B2 2 177 -18 5 1151 445 241 100 16 chr5 74308648 74308838 -78228421 + L1ME1 LINE L1 5741 5946 -233 5 1151 670 261 110 21 chr5 74308892 74309187 -78228072 - ORR1E LTR MaLR -24 355 8 5 1151 377 295 65 1 chr5 74309203 74309367 -78227892 + L1ME1 LINE L1 6169 6318 -16 5 1151 1309 257 66 31 chr5 74309373 74309859 -78227400 - Charlie1a DNA MER1_type -202 1253 751 5 1151 668 288 28 5 chr5 74310103 74310316 -78226943 - Charlie1a DNA MER1_type -740 715 498 5 1151 455 287 137 8 chr5 74310312 74310554 -78226705 + MLT1A0 LTR MaLR 6 278 -87 5 1151 197 374 94 33 chr5 74310646 74311125 -78226134 + L2a LINE L2 2919 3426 0 5 1151 440 291 29 34 chr5 74311881 74312040 -78225219 + MLT1B LTR MaLR 15 179 -288 5 1151 335 232 0 0 chr5 74312040 74312109 -78225150 + BC1_Mm scRNA scRNA 1 69 -83 5 1151 252 167 0 0 chr5 74312125 74312173 -78225086 + GA-rich Low_complexity Low_complexity 2 49 0 5 1151 288 330 9 9 chr5 74312239 74312349 -78224910 + MLT1B LTR MaLR 281 390 0 5 1151 234 0 0 0 chr5 74312425 74312451 -78224808 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1151 596 320 9 6 chr5 74312698 74312904 -78224355 + B3A SINE B2 1 211 -5 5 1151 300 256 90 8 chr5 74313124 74313246 -78224013 - B3 SINE B2 -43 173 42 5 1151 275 242 63 41 chr5 74313603 74313700 -78223559 + L1ME2 LINE L1 4841 4939 -1207 5 1151 757 260 65 133 chr5 74314065 74314433 -78222826 + RMER20B LTR ERVK 244 586 -41 5 1151 234 268 102 47 chr5 74314608 74314823 -78222436 + L1ME2 LINE L1 5051 5277 -869 5 1151 443 327 85 25 chr5 74314981 74315717 -78221542 + L1ME2 LINE L1 5293 6085 -94 5 1151 234 0 0 0 chr5 74315912 74315938 -78221321 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1151 3062 251 78 14 chr5 74316001 74316890 -78220369 + Lx8 LINE L1 6304 7249 -224 5 1151 891 148 53 32 chr5 74316896 74317084 -78220175 + B2_Mm2 SINE B2 3 194 -1 5 1151 1658 251 33 23 chr5 74317092 74317555 -78219704 + Lx5 LINE L1 6633 7471 -2 5 1152 366 250 164 45 chr5 74318411 74318545 -78218714 + RSINE1 SINE B4 3 152 -13 5 1152 288 0 0 0 chr5 74318549 74318581 -78218678 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1152 342 0 0 0 chr5 74318581 74318619 -78218640 + (GA)n Simple_repeat Simple_repeat 1 38 0 5 1152 29 60 0 0 chr5 74318619 74318669 -78218590 + AT_rich Low_complexity Low_complexity 1 50 0 5 1152 183 302 0 45 chr5 74319703 74319769 -78217490 + MER5A DNA MER1_type 59 121 -68 5 1152 369 252 89 0 chr5 74319947 74320070 -78217189 - MER5A1 DNA MER1_type -20 146 13 5 1152 438 248 50 0 chr5 74320396 74320517 -78216742 + B3 SINE B2 76 202 -14 5 1152 386 297 87 54 chr5 74320701 74320886 -78216373 + MLT1D LTR MaLR 1 191 -314 5 1152 444 269 150 0 chr5 74320932 74321125 -78216134 + MLT1D LTR MaLR 267 488 -17 5 1152 489 34 0 0 chr5 74322070 74322129 -78215130 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1152 973 153 38 16 chr5 74322348 74322534 -78214725 + B2_Mm2 SINE B2 2 191 -4 5 1152 7337 27 0 4 chr5 74322841 74323666 -78213593 - RLTR13B2 LTR ERVK 0 822 1 5 1152 254 246 46 0 chr5 74323725 74323790 -78213469 + ID4_ SINE ID 4 71 -12 5 1152 443 320 17 6 chr5 74324470 74324646 -78212613 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1152 819 276 119 0 chr5 74324680 74324941 -78212318 - B4A SINE B4 0 292 1 5 1152 464 283 22 103 chr5 74325573 74325758 -78211501 + MTE2a LTR MaLR 1 170 -209 5 1152 1108 42 23 23 chr5 74325800 74325972 -78211287 + (TCCCC)n Simple_repeat Simple_repeat 5 176 0 5 1152 4383 52 2 2 chr5 74326017 74326559 -78210700 - L1_Mm LINE L1 -397 5486 4945 5 1152 6437 70 1 0 chr5 74326555 74327383 -78209876 + L1_Mm LINE L1 4120 4948 -935 5 1152 297 148 0 0 chr5 74328911 74328965 -78208294 + B3A SINE B2 3 56 -142 5 1152 529 248 14 36 chr5 74329664 74329802 -78207457 + B1_Mur1 SINE Alu 5 139 -10 5 1152 1730 144 47 92 chr5 74330347 74330751 -78206508 + ORR1B1 LTR MaLR 1 386 -8 5 1152 760 209 0 52 chr5 74330953 74331125 -78206134 + RSINE1 SINE B4 3 165 0 5 1152 336 301 158 5 chr5 74331199 74331383 -78205876 - MER33 DNA MER1_type -111 213 2 5 1152 1523 147 0 0 chr5 74331629 74331854 -78205405 + URR1B DNA MER1_type 1 225 0 5 1152 286 200 0 0 chr5 74332709 74332769 -78204490 - MLT1B LTR MaLR -1 389 330 5 1152 230 152 147 29 chr5 74332911 74332979 -78204280 + RMER10A LTR ERVL 319 394 -48 5 1152 414 0 0 0 chr5 74332987 74333033 -78204226 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1152 1566 159 40 118 chr5 74333105 74333192 -78204067 - ORR1B2 LTR MaLR 0 367 311 5 1152 1458 27 22 5 chr5 74333192 74333376 -78203883 - L1Md_F3 LINE L1 -1 6583 6397 5 1152 1566 159 40 118 chr5 74333376 74333686 -78203573 - ORR1B2 LTR MaLR -57 310 1 5 1152 949 209 97 0 chr5 74334683 74334879 -78202380 + B3 SINE B2 1 215 -1 5 1152 622 250 46 5 chr5 74334941 74335138 -78202121 + L1MA5 LINE L1 6090 6294 -6 5 1152 2318 148 42 17 chr5 74335204 74335611 -78201648 + MTC LTR MaLR 1 417 -4 5 1152 207 357 171 0 chr5 74336004 74336133 -78201126 + L2a LINE L2 3275 3425 -1 5 1152 832 255 0 25 chr5 74336211 74336412 -78200847 + B3 SINE B2 7 202 -14 5 1152 553 313 147 0 chr5 74336471 74336736 -78200523 - MER70A LTR ERVL 0 472 169 5 1152 1885 129 52 61 chr5 74336754 74337083 -78200176 - ORR1A3 LTR MaLR 0 326 1 5 1152 383 273 0 6 chr5 74337282 74337386 -78199873 - ID4 SINE ID -50 102 2 5 1152 3534 145 42 32 chr5 74337421 74338085 -78199174 + RLTR17 LTR ERVK 1 671 -21 5 1152 219 103 0 0 chr5 74338107 74338146 -78199113 + (T)n Simple_repeat Simple_repeat 1 39 0 5 1152 251 226 70 23 chr5 74338155 74338241 -78199018 - B1F1 SINE Alu -44 105 16 5 1152 735 159 29 29 chr5 74338662 74338798 -78198461 + B1_Mur2 SINE Alu 9 144 -5 5 1152 251 325 0 12 chr5 74338800 74338881 -78198378 + MER21B LTR ERV1 92 171 -692 5 1152 1844 181 116 52 chr5 74340003 74340469 -78196790 + MT2A LTR ERVL 38 533 0 5 1152 4070 120 106 12 chr5 74340708 74341399 -78195860 + RMER6A LTR ERVK 1 756 0 5 1152 420 20 0 0 chr5 74341404 74341453 -78195806 + (TC)n Simple_repeat Simple_repeat 1 49 0 5 1152 580 248 20 14 chr5 74341528 74341675 -78195584 + B1F SINE Alu 1 148 -1 5 1152 830 259 19 4 chr5 74341675 74341889 -78195370 + B3A SINE B2 2 216 0 5 1152 318 296 140 17 chr5 74342787 74342966 -78194293 - MER3 DNA MER1_type -4 205 5 5 1152 234 0 0 0 chr5 74343251 74343277 -78193982 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 5 1152 205 123 58 58 chr5 74343277 74343289 -78193970 + (GTTTG)n Simple_repeat Simple_repeat 1 12 0 5 1152 372 22 0 0 chr5 74343289 74343334 -78193925 + (TTG)n Simple_repeat Simple_repeat 2 46 0 5 1152 205 123 58 58 chr5 74343334 74343342 -78193917 + (GTTTG)n Simple_repeat Simple_repeat 5 10 0 5 1152 828 81 187 0 chr5 74343342 74343465 -78193794 - B1_Mus1 SINE Alu -1 147 2 5 1152 205 123 58 58 chr5 74343465 74343512 -78193747 + (GTTTG)n Simple_repeat Simple_repeat 4 54 0 5 1152 1119 128 8 0 chr5 74343525 74343778 -78193481 + (TTGG)n Simple_repeat Simple_repeat 1 255 0 5 1152 698 165 98 0 chr5 74343779 74343912 -78193347 - B1_Mur3 SINE Alu -3 146 1 5 1152 854 106 8 0 chr5 74343994 74344126 -78193133 + (GAAA)n Simple_repeat Simple_repeat 3 135 0 5 1152 568 270 32 16 chr5 74344595 74344768 -78192491 + B3A SINE B2 37 214 -2 5 1152 1009 339 48 37 chr5 74346133 74346590 -78190669 + FordPrefect DNA Tip100 60 521 -1162 5 1152 408 20 0 0 chr5 74346642 74346691 -78190568 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1152 228 311 32 32 chr5 74346932 74347025 -78190234 + FordPrefect DNA Tip100 928 1020 -663 5 1152 291 247 96 0 chr5 74347052 74347125 -78190134 + B3A SINE B2 89 168 -30 5 1152 1164 307 66 40 chr5 74347214 74347701 -78189558 + FordPrefect DNA Tip100 1003 1499 -184 5 1152 216 0 0 0 chr5 74347701 74347725 -78189534 + (TAA)n Simple_repeat Simple_repeat 1 24 0 5 1152 1164 307 66 40 chr5 74347725 74347743 -78189516 + FordPrefect DNA Tip100 1500 1530 -153 5 1152 2080 141 110 3 chr5 74347743 74348099 -78189160 - ORR1B1 LTR MaLR 0 394 1 5 1152 1164 307 66 40 chr5 74348099 74348166 -78189093 + FordPrefect DNA Tip100 1531 1590 -93 5 1152 432 327 67 95 chr5 74348184 74348759 -78188500 + MLT1F2 LTR MaLR 18 560 0 5 1152 561 318 189 52 chr5 74349114 74349607 -78187652 - MLT1F2 LTR MaLR -8 561 3 5 1152 720 203 20 20 chr5 74349747 74349893 -78187366 - B1_Mur1 SINE Alu -3 146 1 5 1152 235 68 22 133 chr5 74349900 74350035 -78187224 + (GTTTG)n Simple_repeat Simple_repeat 2 121 0 5 1152 765 173 56 21 chr5 74350039 74350181 -78187078 - B1_Mus1 SINE Alu 0 148 2 5 1152 207 355 50 44 chr5 74350678 74350837 -78186422 - MIRb SINE MIR -28 240 81 5 1152 3313 48 5 2 chr5 74351972 74352371 -78184888 + MTB LTR MaLR 1 400 0 5 1152 536 0 0 15 chr5 74354126 74354191 -78183068 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 5 1152 483 100 0 0 chr5 74354192 74354262 -78182997 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1152 489 184 64 0 chr5 74354375 74354484 -78182775 + B3 SINE B2 95 210 -6 5 1152 455 116 44 18 chr5 74356264 74356312 -78180947 + polypurine Low_complexity Low_complexity 2 49 0 6 1152 702 65 0 0 chr5 74356312 74356404 -78180855 + (GAA)n Simple_repeat Simple_repeat 3 94 0 6 1152 455 116 44 18 chr5 74356404 74356469 -78180790 + polypurine Low_complexity Low_complexity 50 118 0 6 1152 489 34 0 0 chr5 74356482 74356541 -78180718 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 6 1152 270 175 47 16 chr5 74357419 74357483 -78179776 - B1F1 SINE Alu -1 148 83 6 1152 263 303 13 0 chr5 74357493 74357569 -78179690 + Lx8 LINE L1 7212 7288 -185 6 1152 3003 73 2 30 chr5 74357592 74357999 -78179260 - MTA_Mm LTR MaLR 0 396 1 6 1152 9594 20 0 0 chr5 74357999 74359077 -78178182 + L1Md_T LINE L1 4508 5585 -298 6 1152 8535 34 0 2 chr5 74359077 74360075 -78177184 + L1Md_T LINE L1 5587 6582 0 6 1152 1313 173 0 9 chr5 74360251 74360479 -78176780 - URR1A DNA MER1_type 0 226 1 6 1152 295 290 109 89 chr5 74360841 74361189 -78176070 - MLT1C LTR MaLR -79 388 34 6 1152 640 214 95 6 chr5 74362252 74362421 -78174838 + ORR1D1 LTR MaLR 3 186 -188 6 1152 990 118 0 0 chr5 74362428 74362686 -78174573 + (TC)n Simple_repeat Simple_repeat 1 258 0 6 1152 635 264 72 26 chr5 74362688 74362914 -78174345 + ORR1D1 LTR MaLR 149 384 0 6 1152 24 0 0 0 chr5 74363292 74363316 -78173943 + AT_rich Low_complexity Low_complexity 1 24 0 6 1152 805 264 52 48 chr5 74364106 74364397 -78172862 + L1MD3 LINE L1 7678 7969 -26 6 1152 1684 215 83 3 chr5 74364886 74365273 -78171986 - MTD LTR MaLR 0 419 2 6 1152 601 261 45 67 chr5 74365444 74365711 -78171548 - MTEa LTR MaLR -118 261 1 6 1152 356 256 56 56 chr5 74366308 74366486 -78170773 + L1MC4 LINE L1 7711 7888 -154 6 1152 4976 121 34 79 chr5 74366558 74367507 -78169752 + RMER17A2 LTR ERVK 1 906 0 6 1152 376 318 42 36 chr5 74368037 74368290 -78168969 - HAL1-2a_MD LINE L1 -516 2508 2347 6 1152 557 168 0 0 chr5 74369242 74369343 -78167916 + RMER17A2 LTR ERVK 715 815 -91 6 1152 577 75 189 16 chr5 74370692 74370814 -78166445 - B1_Mur4 SINE Alu -1 149 7 6 1152 255 145 229 14 chr5 74370868 74370938 -78166321 + PB1 SINE Alu 38 122 -5 6 1152 413 240 30 10 chr5 74370948 74371049 -78166210 + B1F SINE Alu 25 127 -22 6 1152 315 260 110 55 chr5 74371093 74371256 -78166003 + RMER5 LTR ERV1 34 205 -329 6 1152 2189 222 5 12 chr5 74383265 74383843 -78153416 - L1Md_F LINE L1 -5939 580 7 6 1152 216 179 0 0 chr5 74383844 74383883 -78153376 - B3A SINE B2 -157 41 3 6 1152 180 200 0 0 chr5 74384191 74384226 -78153033 + L2a LINE L2 3378 3412 -14 6 1152 1002 261 31 24 chr5 74385448 74385735 -78151524 + B4A SINE B4 2 290 -2 6 1152 353 186 11 11 chr5 74386082 74386169 -78151090 - Lx7 LINE L1 0 7696 7610 6 1152 2222 210 103 21 chr5 74386224 74386255 -78151004 - Lx7 LINE L1 -205 7491 7458 6 1152 369 0 0 0 chr5 74386255 74386296 -78150963 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1152 2222 210 103 21 chr5 74386296 74386410 -78150849 - Lx7 LINE L1 -239 7457 7328 6 1152 219 36 0 0 chr5 74386410 74386438 -78150821 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 6 1152 2222 210 103 21 chr5 74386438 74386739 -78150520 - Lx7 LINE L1 -369 7327 7019 6 1152 2482 143 249 4 chr5 74386739 74387230 -78150029 - RMER19C LTR ERVK 0 611 1 6 1152 2222 210 103 21 chr5 74387230 74387351 -78149908 - Lx7 LINE L1 -678 7018 6876 6 1152 180 327 0 0 chr5 74388810 74388923 -78148336 + (TG)n Simple_repeat Simple_repeat 2 114 0 6 1152 218 304 0 0 chr5 74388934 74388990 -78148269 + (TATG)n Simple_repeat Simple_repeat 4 59 0 6 1152 597 276 45 0 chr5 74388991 74389147 -78148112 - RSINE1 SINE B4 0 165 3 6 1152 827 337 115 23 chr5 74390241 74390764 -78146495 - MER90a LTR ERV1 -20 594 24 6 1152 535 163 47 8 chr5 74390879 74391375 -78145884 + (TG)n Simple_repeat Simple_repeat 1 515 0 6 1152 204 40 0 0 chr5 74391839 74391864 -78145395 + (TC)n Simple_repeat Simple_repeat 1 25 0 6 1152 493 231 235 12 chr5 74392657 74392819 -78144440 - B3A SINE B2 0 198 1 6 1152 960 219 66 0 chr5 74393314 74393510 -78143749 - B3 SINE B2 -6 210 2 6 1152 26 0 0 0 chr5 74394586 74394612 -78142647 + AT_rich Low_complexity Low_complexity 1 26 0 6 1152 246 164 0 0 chr5 74394620 74394675 -78142584 + T-rich Low_complexity Low_complexity 1 55 0 6 1152 477 0 0 0 chr5 74396984 74397037 -78140222 + (GAA)n Simple_repeat Simple_repeat 3 55 0 6 1152 325 255 204 0 chr5 74398887 74398985 -78138274 + PB1 SINE Alu 8 125 -2 6 1152 1117 48 13 40 chr5 74399884 74400036 -78137223 - B1_Mus1 SINE Alu 0 148 1 6 1152 189 0 0 0 chr5 74400236 74400257 -78137002 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 6 1152 418 250 9 35 chr5 74400423 74400539 -78136720 + PB1D10 SINE Alu 4 116 -1 6 1152 221 115 89 71 chr5 74401068 74401124 -78136135 - B1_Mus2 SINE Alu -5 142 86 6 1152 2262 108 9 0 chr5 74401422 74401738 -78135521 + ORR1A2 LTR MaLR 9 327 0 6 1152 354 252 169 23 chr5 74402152 74402282 -78134977 + B1F1 SINE Alu 1 149 0 6 1152 225 196 0 0 chr5 74402375 74402421 -78134838 + GA-rich Low_complexity Low_complexity 4 49 0 6 1152 3608 63 39 37 chr5 74402450 74402493 -78134766 + Lx3_Mus LINE L1 6496 6538 -471 6 1152 1149 83 0 0 chr5 74402493 74402638 -78134621 + B1_Mm SINE Alu 3 147 0 6 1152 3608 63 39 37 chr5 74402638 74403106 -78134153 + Lx3_Mus LINE L1 6539 7008 -1 6 1152 702 312 9 14 chr5 74403300 74403511 -78133748 + ID_B1 SINE B4 1 210 -14 6 1152 423 0 0 0 chr5 74403517 74403564 -78133695 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1152 228 188 0 0 chr5 74403566 74403630 -78133629 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1152 197 245 10 0 chr5 74404548 74404650 -78132609 + (TG)n Simple_repeat Simple_repeat 1 103 0 6 1152 469 226 11 0 chr5 74404666 74404843 -78132416 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1152 795 201 2 13 chr5 74404866 74405405 -78131854 + (TG)n Simple_repeat Simple_repeat 1 532 0 6 1152 246 206 0 161 chr5 74405405 74405486 -78131773 - B3A SINE B2 -16 182 115 6 1152 461 345 67 16 chr5 74405433 74405686 -78131573 - B4A SINE B4 0 292 27 6 1152 243 0 0 0 chr5 74405749 74405776 -78131483 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 6 1152 2163 90 54 13 chr5 74406436 74406750 -78130509 + ORR1A2 LTR MaLR 1 327 0 6 1152 1212 62 0 0 chr5 74406789 74406935 -78130324 - B1_Mus1 SINE Alu -2 146 1 6 1152 906 171 0 0 chr5 74406999 74407145 -78130114 + B1_Mus1 SINE Alu 3 148 0 6 1152 27 0 0 0 chr5 74407162 74407189 -78130070 + AT_rich Low_complexity Low_complexity 1 27 0 6 1152 268 235 125 19 chr5 74407316 74407420 -78129839 + PB1D10 SINE Alu 2 116 -1 6 1152 186 43 0 0 chr5 74408142 74408165 -78129094 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1152 744 223 111 5 chr5 74408314 74408521 -78128738 + L1MA4A LINE L1 5677 5905 -398 6 1152 683 167 6 0 chr5 74408539 74408701 -78128558 + (TG)n Simple_repeat Simple_repeat 2 164 0 6 1152 333 0 0 0 chr5 74408701 74408738 -78128521 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1152 239 54 27 0 chr5 74409815 74409852 -78127407 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6 1152 558 242 16 16 chr5 74409858 74409980 -78127279 - B1_Mus1 SINE Alu -21 127 6 6 1152 234 0 0 0 chr5 74410006 74410032 -78127227 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1152 1156 278 38 71 chr5 74410323 74410715 -78126544 + MTEa LTR MaLR 1 379 0 6 1152 385 287 46 41 chr5 74411685 74411877 -78125382 - B3A SINE B2 -1 194 1 6 1152 1387 161 5 0 chr5 74412075 74412298 -78124961 - URR1B DNA MER1_type 0 225 2 6 1152 315 0 0 0 chr5 74412373 74412408 -78124851 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1152 936 184 70 28 chr5 74413767 74413980 -78123279 - RMER20B LTR ERVK -172 455 234 6 1152 419 239 0 0 chr5 74414228 74414299 -78122960 - B1_Mus2 SINE Alu -75 72 2 6 1152 365 191 9 0 chr5 74414433 74414543 -78122716 + (TGG)n Simple_repeat Simple_repeat 3 113 0 6 1152 210 219 0 0 chr5 74415274 74415315 -78121944 + G-rich Low_complexity Low_complexity 1 41 0 6 1152 21 36 0 0 chr5 74416407 74416435 -78120824 + GC_rich Low_complexity Low_complexity 1 28 0 6 1152 394 339 45 6 chr5 74416692 74416870 -78120389 + L3 LINE CR1 4291 4475 -14 6 1152 474 70 0 0 chr5 74416975 74417046 -78120213 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1152 314 252 127 21 chr5 74417092 74417234 -78120025 + L1MA6 LINE L1 6142 6298 -2 6 1152 648 250 0 8 chr5 74417270 74417403 -78119856 - B3 SINE B2 0 216 85 6 1152 914 191 85 0 chr5 74417444 74417643 -78119616 - B3 SINE B2 0 216 1 6 1152 270 0 0 0 chr5 74417883 74417913 -78119346 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1152 697 273 75 43 chr5 74418334 74418613 -78118646 + B4A SINE B4 4 291 -1 6 1152 240 143 0 0 chr5 74418627 74418669 -78118590 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1152 249 174 29 14 chr5 74418668 74418738 -78118521 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 1152 1070 116 12 0 chr5 74418744 74418917 -78118342 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 6 1152 272 320 56 37 chr5 74419088 74419357 -78117902 + L1ME3B LINE L1 5694 5967 -273 6 1152 622 291 98 21 chr5 74419625 74419738 -78117521 + L1ME3B LINE L1 5559 5671 -569 6 1152 477 0 0 0 chr5 74419738 74419791 -78117468 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1152 622 291 98 21 chr5 74419791 74420056 -78117203 + L1ME3B LINE L1 5672 5965 -275 6 1152 608 214 106 6 chr5 74420097 74420276 -78116983 + B3A SINE B2 1 197 -1 6 1152 328 221 70 0 chr5 74420443 74420529 -78116730 + Lx7 LINE L1 7211 7302 -394 6 1152 189 0 0 0 chr5 74420538 74420559 -78116700 + (TTG)n Simple_repeat Simple_repeat 2 22 0 6 1152 243 61 0 0 chr5 74420565 74420598 -78116661 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1152 1136 81 0 7 chr5 74420606 74420755 -78116504 - B1_Mus1 SINE Alu 0 148 1 6 1152 200 250 18 55 chr5 74420755 74420865 -78116394 + T-rich Low_complexity Low_complexity 2 107 0 6 1152 483 203 90 108 chr5 74421098 74421264 -78115995 + RSINE1 SINE B4 2 164 -1 7 1152 189 109 43 21 chr5 74421265 74421312 -78115947 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 7 1152 259 226 98 57 chr5 74421326 74421448 -78115811 + L1MC5 LINE L1 7382 7508 -453 7 1152 509 337 29 29 chr5 74421488 74421696 -78115563 + B4A SINE B4 2 209 -83 7 1152 279 0 0 0 chr5 74421739 74421770 -78115489 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1152 198 71 0 0 chr5 74421770 74421797 -78115462 + (CG)n Simple_repeat Simple_repeat 1 28 0 7 1152 279 0 0 0 chr5 74422083 74422114 -78115145 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1152 3726 199 72 66 chr5 74422759 74423176 -78114083 + RCHARR1 DNA MER1_type 8 465 -509 7 1152 836 158 72 0 chr5 74423176 74423315 -78113944 - B1_Mur3 SINE Alu 0 149 1 7 1152 3726 199 72 66 chr5 74423315 74423383 -78113876 + RCHARR1 DNA MER1_type 466 519 -455 7 1152 608 240 55 73 chr5 74423383 74423603 -78113656 + B3 SINE B2 1 216 0 7 1152 3726 199 72 66 chr5 74423603 74424077 -78113182 + RCHARR1 DNA MER1_type 520 973 -1 7 1152 180 0 0 0 chr5 74425115 74425135 -78112124 + (CCA)n Simple_repeat Simple_repeat 2 21 0 7 1152 759 236 94 60 chr5 74425759 74426025 -78111234 - B4A SINE B4 -2 290 16 7 1152 442 306 122 42 chr5 74426618 74426881 -78110378 - ORR1E LTR MaLR -23 336 53 7 1152 896 123 0 7 chr5 74427113 74427260 -78109999 + (GGAA)n Simple_repeat Simple_repeat 3 148 0 7 1152 560 226 0 50 chr5 74427338 74427459 -78109800 + B1_Mur4 SINE Alu 2 116 -34 7 1152 30 0 0 0 chr5 74427461 74427491 -78109768 + AT_rich Low_complexity Low_complexity 1 30 0 7 1152 404 259 0 77 chr5 74427528 74427645 -78109614 - PB1D9 SINE Alu -9 111 4 7 1152 552 15 0 0 chr5 74427652 74427717 -78109542 + (TC)n Simple_repeat Simple_repeat 1 65 0 7 1152 450 0 0 0 chr5 74427718 74427768 -78109491 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1152 1143 83 104 23 chr5 74427782 74427955 -78109304 - B2_Mm2 SINE B2 -8 187 1 7 1152 532 260 0 103 chr5 74427983 74428129 -78109130 - B3A SINE B2 -67 131 1 7 1152 965 152 122 30 chr5 74428785 74428982 -78108277 - URR1B DNA MER1_type 0 225 11 7 1152 1587 280 97 22 chr5 74429019 74429515 -78107744 + MER44B DNA MER2_type 8 540 -10 7 1152 695 230 7 0 chr5 74429685 74429820 -78107439 + B1F1 SINE Alu 4 139 -10 7 1152 207 0 0 0 chr5 74429820 74429843 -78107416 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1152 1258 115 15 25 chr5 74429876 74430073 -78107186 + B2_Mm2 SINE B2 1 195 0 7 1152 207 114 0 0 chr5 74430114 74430149 -78107110 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1152 258 350 10 80 chr5 74431188 74431239 -78106020 - MIRc SINE MIR -39 229 185 7 1152 1032 86 0 0 chr5 74431239 74431401 -78105858 + (TC)n Simple_repeat Simple_repeat 1 162 0 7 1152 258 350 10 80 chr5 74431401 74431548 -78105711 - MIRc SINE MIR -84 184 45 7 1152 3193 161 37 12 chr5 74431809 74432370 -78104889 + RMER15 LTR ERVL 1 575 0 7 1152 213 159 0 0 chr5 74432669 74432713 -78104546 + G-rich Low_complexity Low_complexity 1 44 0 7 1152 510 226 9 9 chr5 74432881 74432988 -78104271 + B1F2 SINE Alu 43 149 0 7 1152 250 344 29 133 chr5 74433506 74433784 -78103475 - L2a LINE L2 -41 3385 3137 7 1152 822 209 136 139 chr5 74433966 74434363 -78102896 + MT2A LTR ERVL 1 451 -82 7 1152 464 222 112 159 chr5 74434543 74434757 -78102502 - MER2 DNA MER2_type -1 344 141 7 1152 507 123 0 0 chr5 74434757 74434838 -78102421 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1152 314 288 222 0 chr5 74434847 74435000 -78102259 - MER2 DNA MER2_type -151 194 8 7 1152 284 292 219 14 chr5 74435170 74435316 -78101943 + B2_Mm2 SINE B2 1 176 -19 7 1152 804 243 68 19 chr5 74435379 74435585 -78101674 - B3 SINE B2 0 216 1 7 1152 343 288 35 124 chr5 74436834 74437036 -78100223 + ORR1E LTR MaLR 6 189 -170 7 1152 739 180 62 0 chr5 74437385 74437513 -78099746 + B1_Mus2 SINE Alu 1 136 -11 7 1152 873 114 0 0 chr5 74437513 74437645 -78099614 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 7 1152 441 0 0 0 chr5 74438284 74438333 -78098926 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1152 498 263 22 6 chr5 74438423 74438585 -78098674 + B3 SINE B2 2 176 -19 7 1152 585 280 98 65 chr5 74438899 74439249 -78098010 + RMER15 LTR ERVL 6 463 -112 7 1152 1358 86 16 21 chr5 74439249 74439440 -78097819 + B2_Mm2 SINE B2 1 190 -5 7 1152 585 275 128 56 chr5 74439440 74439491 -78097768 + RMER15 LTR ERVL 464 505 -70 7 1152 348 83 0 0 chr5 74439530 74439578 -78097681 + (GGGAGA)n Simple_repeat Simple_repeat 5 52 0 7 1152 493 78 0 0 chr5 74439707 74439771 -78097488 + (TG)n Simple_repeat Simple_repeat 1 64 0 7 1152 672 195 11 6 chr5 74439771 74439946 -78097313 + (TA)n Simple_repeat Simple_repeat 1 176 0 7 1152 202 42 0 0 chr5 74439946 74439970 -78097289 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1152 485 325 153 25 chr5 74439985 74440351 -78096908 + MLT1D LTR MaLR 7 419 -86 7 1152 519 232 8 67 chr5 74440358 74440492 -78096767 + RSINE1 SINE B4 1 126 -39 7 1152 637 313 81 39 chr5 74441565 74441908 -78095351 + MLT1D LTR MaLR 8 375 -252 7 1152 1050 99 0 0 chr5 74441990 74442246 -78095013 + (TG)n Simple_repeat Simple_repeat 1 256 0 7 1152 780 286 66 29 chr5 74442282 74442556 -78094703 - B4A SINE B4 -6 286 3 7 1152 582 308 106 57 chr5 74443251 74443683 -78093576 - MLT1J LTR MaLR -26 422 12 7 1152 526 258 8 39 chr5 74444110 74444239 -78093020 - PB1 SINE Alu -2 125 1 7 1152 961 226 72 0 chr5 74444332 74444527 -78092732 - B3 SINE B2 -6 210 2 7 1152 216 0 0 0 chr5 74445961 74445985 -78091274 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1152 448 270 25 50 chr5 74445996 74446117 -78091142 - B4A SINE B4 0 292 175 7 1152 1020 189 18 28 chr5 74446209 74446427 -78090832 + B3 SINE B2 1 216 0 7 1152 465 189 6 7 chr5 74447014 74447131 -78090128 + ORR1A1 LTR MaLR 1 141 -253 7 1152 626 157 13 60 chr5 74447121 74447270 -78089989 + ORR1A1 LTR MaLR 20 161 -185 7 1152 217 247 218 47 chr5 74447699 74447869 -78089390 - MIR SINE MIR -41 221 23 7 1153 447 292 63 31 chr5 74449168 74449214 -78088045 + MER5C DNA MER1_type 111 156 -157 7 1153 297 20 39 20 chr5 74449214 74449265 -78087994 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 7 1153 447 292 63 31 chr5 74449265 74449409 -78087850 + MER5C DNA MER1_type 157 306 -7 7 1153 295 41 41 0 chr5 74449647 74449696 -78087563 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 7 1153 807 211 0 0 chr5 74449723 74449870 -78087389 + B1_Mus1 SINE Alu 2 148 0 7 1153 308 127 18 0 chr5 74449872 74449927 -78087332 + (GGA)n Simple_repeat Simple_repeat 3 58 0 7 1153 1051 228 24 5 chr5 74450048 74450260 -78086999 + B3 SINE B2 1 216 0 7 1153 32 26 0 0 chr5 74450271 74450310 -78086949 + AT_rich Low_complexity Low_complexity 1 39 0 7 1153 1230 61 0 0 chr5 74450359 74450507 -78086752 + B1_Mus1 SINE Alu 1 148 0 7 1153 195 336 8 86 chr5 74450998 74451115 -78086144 - MIR3 SINE MIR -87 121 14 7 1153 677 226 114 16 chr5 74451447 74451640 -78085619 + B3 SINE B2 2 213 -3 7 1153 304 227 17 0 chr5 74451737 74451856 -78085403 + (CA)n Simple_repeat Simple_repeat 2 122 0 7 1153 592 221 0 16 chr5 74451871 74452177 -78085082 + (CA)n Simple_repeat Simple_repeat 1 300 0 7 1153 250 296 172 68 chr5 74452573 74452709 -78084550 - Lx9 LINE L1 -2 7471 7329 7 1153 276 30 0 0 chr5 74452709 74452742 -78084517 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1153 266 305 147 63 chr5 74452742 74452937 -78084322 - Lx9 LINE L1 -223 7421 7165 7 1153 734 207 37 0 chr5 74453113 74453248 -78084011 + B1_Mus2 SINE Alu 1 140 -7 7 1153 230 109 0 42 chr5 74453274 74453322 -78083937 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 7 1153 1380 60 0 7 chr5 74453328 74453882 -78083377 + (GAA)n Simple_repeat Simple_repeat 1 549 0 7 1153 651 26 0 0 chr5 74453882 74453958 -78083301 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 7 1153 353 271 28 58 chr5 74454413 74454527 -78082732 - B1F2 SINE Alu -1 116 1 7 1153 307 240 77 77 chr5 74454566 74454670 -78082589 - L2b LINE L2 0 3375 3272 7 1153 330 300 74 16 chr5 74454703 74454825 -78082434 + RSINE1 SINE B4 4 132 -33 7 1153 387 0 0 0 chr5 74454914 74454957 -78082302 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1153 809 179 28 0 chr5 74455143 74455288 -78081971 + B1_Mur3 SINE Alu 1 149 0 7 1153 1213 61 0 0 chr5 74455326 74455473 -78081786 + B1_Mus1 SINE Alu 2 148 0 7 1153 356 247 157 48 chr5 74455478 74455644 -78081615 + L1MCa LINE L1 1775 1958 -4550 7 1153 506 271 78 96 chr5 74455651 74455818 -78081441 - RSINE1 SINE B4 0 165 2 7 1153 266 184 12 106 chr5 74456052 74456137 -78081122 - MLT1A1 LTR MaLR -296 112 36 7 1153 21 0 0 0 chr5 74456806 74456827 -78080432 + AT_rich Low_complexity Low_complexity 1 21 0 7 1153 229 264 0 0 chr5 74457058 74457111 -78080148 + MER5A DNA MER1_type 59 111 -78 7 1153 945 293 66 21 chr5 74457762 74458187 -78079072 + L1M5 LINE L1 5373 5816 -424 7 1153 205 152 0 0 chr5 74458556 74458589 -78078670 + G-rich Low_complexity Low_complexity 1 33 0 7 1153 258 32 0 0 chr5 74459626 74459657 -78077602 + (TTA)n Simple_repeat Simple_repeat 1 31 0 7 1153 628 243 159 6 chr5 74459745 74459927 -78077332 + B3 SINE B2 1 210 -6 7 1153 396 0 0 0 chr5 74460648 74460692 -78076567 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 1153 216 0 0 0 chr5 74461535 74461559 -78075700 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 7 1153 198 91 0 0 chr5 74463233 74463266 -78073993 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1153 32 0 0 0 chr5 74463756 74463788 -78073471 + AT_rich Low_complexity Low_complexity 1 32 0 7 1153 211 73 0 68 chr5 74463997 74464041 -78073218 + (CCCCCA)n Simple_repeat Simple_repeat 5 45 0 7 1153 195 107 35 35 chr5 74464440 74464498 -78072761 + (CGGGG)n Simple_repeat Simple_repeat 4 61 0 8 1153 21 0 0 0 chr5 74464503 74464524 -78072735 + GC_rich Low_complexity Low_complexity 1 21 0 8 1153 658 258 24 112 chr5 74466052 74466301 -78070958 + B4A SINE B4 2 228 -64 8 1153 689 255 47 21 chr5 74466304 74466472 -78070787 + B3A SINE B2 2 177 -21 8 1153 207 0 0 0 chr5 74466472 74466495 -78070764 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1153 689 255 47 21 chr5 74466495 74466518 -78070741 + B3A SINE B2 178 198 0 8 1153 778 124 268 0 chr5 74466520 74466673 -78070586 + B2_Mm2 SINE B2 2 195 0 8 1153 853 181 31 78 chr5 74466694 74466959 -78070300 + B2_Mm1a SINE B2 1 216 0 8 1153 1170 74 0 7 chr5 74466959 74467108 -78070151 + B1_Mus1 SINE Alu 1 148 0 8 1153 270 234 49 130 chr5 74467108 74467154 -78070105 + B2_Mm2 SINE B2 154 195 0 8 1153 302 208 68 14 chr5 74467152 74467225 -78070034 + B4A SINE B4 216 292 0 8 1153 547 221 55 0 chr5 74467376 74467503 -78069756 + B1F1 SINE Alu 3 136 -13 8 1153 2110 69 116 26 chr5 74468104 74468415 -78068844 - MTB LTR MaLR 0 400 62 8 1153 291 203 0 59 chr5 74468441 74468462 -78068797 + B4 SINE B4 67 84 -208 8 1153 576 0 0 0 chr5 74468462 74468526 -78068733 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 8 1153 296 136 0 0 chr5 74468528 74468572 -78068687 + B1_Mus2 SINE Alu 2 45 -102 8 1153 1212 122 3 48 chr5 74468575 74468837 -78068422 - ORR1A1 LTR MaLR -23 371 56 8 1153 309 161 0 0 chr5 74468787 74468843 -78068416 + PB1D9 SINE Alu 65 120 0 8 1153 207 0 0 0 chr5 74468843 74468866 -78068393 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1153 585 151 0 0 chr5 74468980 74469099 -78068160 + (TG)n Simple_repeat Simple_repeat 2 120 0 8 1153 602 156 167 5 chr5 74469126 74469279 -78067980 + B2_Mm2 SINE B2 1 215 -1 8 1153 963 234 48 64 chr5 74469280 74469346 -78067913 - B4A SINE B4 -39 253 203 8 1153 496 259 137 64 chr5 74469346 74469689 -78067570 + RLTR9A LTR ERVK 1 368 0 8 1153 963 234 48 64 chr5 74469689 74469873 -78067386 - B4A SINE B4 -90 202 7 8 1153 323 316 152 6 chr5 74469924 74470102 -78067157 + MLT1K LTR MaLR 384 587 -8 8 1153 1239 134 99 0 chr5 74470526 74470728 -78066531 + URR1B DNA MER1_type 1 222 -3 8 1153 419 248 39 31 chr5 74471001 74471130 -78066129 + B4A SINE B4 10 139 -153 8 1153 525 32 0 0 chr5 74471304 74471367 -78065892 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 8 1153 381 43 0 0 chr5 74471429 74471476 -78065783 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 1153 1143 191 5 20 chr5 74471567 74471770 -78065489 - B3 SINE B2 -5 211 12 8 1153 431 214 184 18 chr5 74472375 74472489 -78064770 + B1F2 SINE Alu 1 133 -16 8 1153 188 182 23 0 chr5 74472494 74472538 -78064721 + G-rich Low_complexity Low_complexity 5 49 0 8 1153 592 242 8 53 chr5 74472555 74472686 -78064573 + RSINE1 SINE B4 13 137 -28 8 1153 202 224 20 0 chr5 74472686 74472735 -78064524 + GA-rich Low_complexity Low_complexity 5 54 0 8 1153 477 274 27 16 chr5 74473573 74473715 -78063544 + B1F SINE Alu 2 147 -1 8 1153 222 158 0 0 chr5 74474038 74474076 -78063183 + L2a LINE L2 3383 3420 -6 8 1153 378 0 0 0 chr5 74474468 74474510 -78062749 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 1153 1779 124 63 125 chr5 74474587 74474775 -78062484 + ORR1A4 LTR MaLR 1 162 -167 8 1153 1375 84 26 0 chr5 74474775 74474965 -78062294 + B2_Mm2 SINE B2 1 195 0 8 1153 1779 124 63 125 chr5 74474965 74475127 -78062132 + ORR1A4 LTR MaLR 163 329 0 8 1153 618 198 0 9 chr5 74475615 74475722 -78061537 + ID_B1 SINE B4 113 218 -6 8 1153 1483 65 5 0 chr5 74475743 74475929 -78061330 + B2_Mm1t SINE B2 2 188 -5 8 1153 368 231 130 56 chr5 74476329 74476542 -78060717 - L1ME2 LINE L1 -113 6049 5824 8 1153 402 21 0 0 chr5 74476616 74476663 -78060596 + (TAA)n Simple_repeat Simple_repeat 2 48 0 8 1153 318 315 175 45 chr5 74476666 74476958 -78060301 - L1ME2 LINE L1 -406 5834 5505 8 1153 220 302 0 0 chr5 74477121 74477174 -78060085 + PB1D10 SINE Alu 30 82 -35 8 1153 214 238 143 0 chr5 74477312 74477375 -78059884 + ID4_ SINE ID 8 79 -4 8 1153 1079 192 48 19 chr5 74477465 74477672 -78059587 + B3 SINE B2 1 213 -3 8 1153 1193 131 95 5 chr5 74478124 74478324 -78058935 - URR1A DNA MER1_type -8 218 1 8 1153 6271 37 20 0 chr5 74478670 74479408 -78057851 - L1Md_T LINE L1 -1 6581 5829 8 1153 569 318 13 7 chr5 74479529 74479684 -78057575 + ID_B1 SINE B4 66 221 -3 8 1153 250 281 184 76 chr5 74479544 74479702 -78057557 + FAM SINE Alu 137 311 0 8 1153 771 233 78 112 chr5 74479753 74479814 -78057445 + B4 SINE B4 18 77 -215 8 1153 255 61 0 0 chr5 74479814 74479847 -78057412 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 8 1153 771 233 78 112 chr5 74479847 74480017 -78057242 + B4 SINE B4 78 241 -51 8 1153 429 301 61 37 chr5 74480145 74480359 -78056900 + MER102b DNA MER1_type 123 341 0 8 1153 383 0 21 0 chr5 74481154 74481201 -78056058 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1153 209 336 20 95 chr5 74481440 74481588 -78055671 - MER5A DNA MER1_type -52 137 1 8 1153 1367 87 11 0 chr5 74481686 74481871 -78055388 - B2_Mm1t SINE B2 -6 187 1 8 1153 227 295 31 31 chr5 74481922 74482020 -78055239 + L1MC5 LINE L1 7028 7125 -836 8 1153 1171 68 0 13 chr5 74482202 74482351 -78054908 + B1_Mm SINE Alu 1 147 0 8 1153 563 226 80 29 chr5 74482400 74482537 -78054722 + ID_B1 SINE B4 81 224 0 8 1153 920 165 11 0 chr5 74482539 74482715 -78054544 + GA-rich Low_complexity Low_complexity 3 180 0 8 1153 249 73 71 18 chr5 74483079 74483135 -78054124 + CT-rich Low_complexity Low_complexity 2 60 0 8 1153 919 174 0 13 chr5 74483170 74483321 -78053938 - B1_Mur1 SINE Alu 0 149 1 8 1153 431 241 213 0 chr5 74483391 74483532 -78053727 + Lx8 LINE L1 7155 7325 -148 8 1153 3672 40 2 24 chr5 74484035 74484497 -78052762 - L1Md_F2 LINE L1 -1 6581 6130 8 1153 4486 53 2 0 chr5 74484499 74485045 -78052214 + L1Md_F2 LINE L1 5612 6158 -424 8 1153 1752 176 62 17 chr5 74485070 74485428 -78051831 - ORR1D1 LTR MaLR 0 374 1 8 1153 224 171 0 0 chr5 74485440 74485475 -78051784 + B2_Mm2 SINE B2 91 125 -70 8 1153 216 0 0 0 chr5 74485487 74485511 -78051748 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 8 1153 350 309 14 49 chr5 74485580 74485723 -78051536 + RSINE1 SINE B4 5 142 -23 8 1153 632 202 207 6 chr5 74486210 74486389 -78050870 + B3 SINE B2 2 216 0 8 1153 185 83 28 0 chr5 74486451 74486487 -78050772 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 8 1153 1250 55 0 0 chr5 74486489 74486635 -78050624 - B1_Mus2 SINE Alu 0 147 2 8 1153 1198 48 14 0 chr5 74486640 74486785 -78050474 - B1_Mus1 SINE Alu 0 148 2 8 1153 300 307 126 59 chr5 74486966 74487101 -78050158 + ID_B1 SINE B4 58 201 -23 8 1153 955 144 0 7 chr5 74487245 74487392 -78049867 + B1_Mur4 SINE Alu 3 148 -2 8 1153 392 188 309 20 chr5 74487470 74487622 -78049637 - B3A SINE B2 -2 196 1 8 1153 342 247 56 68 chr5 74487622 74487783 -78049476 + L1MB7 LINE L1 6025 6183 -1 8 1153 246 238 25 12 chr5 74487987 74488068 -78049191 + L1MC5 LINE L1 7696 7777 -184 8 1153 288 0 0 0 chr5 74488226 74488258 -78049001 + (TTA)n Simple_repeat Simple_repeat 2 33 0 8 1153 336 313 0 9 chr5 74488326 74488442 -78048817 + PB1D10 SINE Alu 3 117 0 8 1153 21 0 0 0 chr5 74489275 74489296 -78047963 + GC_rich Low_complexity Low_complexity 1 21 0 8 1153 312 181 81 46 chr5 74490400 74490487 -78046772 - RSINE1 SINE B4 -39 126 37 8 1153 229 252 152 127 chr5 74490803 74490921 -78046338 - MER3 DNA MER1_type -60 149 29 8 1153 398 198 65 65 chr5 74491206 74491314 -78045945 + B3A SINE B2 3 110 -88 8 1153 817 144 198 26 chr5 74491872 74492064 -78045195 - URR1A DNA MER1_type 0 226 2 8 1153 231 250 105 0 chr5 74492349 74492425 -78044834 + MT2B2 LTR ERVL 167 250 -334 8 1153 189 132 0 0 chr5 74492561 74492599 -78044660 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 8 1153 1132 42 35 0 chr5 74492599 74492742 -78044517 - B1_Mus1 SINE Alu 0 148 1 8 1153 281 273 220 6 chr5 74492906 74493083 -78044176 - B3 SINE B2 -1 215 1 8 1153 336 205 384 24 chr5 74493101 74493265 -78043994 - ID_B1 SINE B4 0 224 2 8 1153 430 238 133 69 chr5 74493307 74493556 -78043703 - L1M3 LINE L1 -370 5813 5549 8 1153 420 147 0 0 chr5 74494276 74494351 -78042908 + (TCC)n Simple_repeat Simple_repeat 1 75 0 8 1153 441 296 166 26 chr5 74495107 74495523 -78041736 - L1ME3A LINE L1 -314 5859 5386 8 1153 319 265 0 0 chr5 74495539 74495607 -78041652 - ID_B1 SINE B4 -9 215 148 8 1153 503 262 16 0 chr5 74495660 74495786 -78041473 - RSINE1 SINE B4 -21 144 17 8 1153 469 291 114 56 chr5 74496084 74496513 -78040746 - L1ME2z LINE L1 -152 6292 5839 8 1153 759 191 19 81 chr5 74496592 74496803 -78040456 - B3A SINE B2 0 198 1 8 1153 352 308 26 0 chr5 74497017 74497134 -78040125 - PB1D7 SINE Alu 0 120 1 8 1153 555 243 48 14 chr5 74497266 74497412 -78039847 + RSINE1 SINE B4 4 154 -11 8 1153 916 151 0 7 chr5 74497499 74497646 -78039613 + B1_Mur4 SINE Alu 5 150 0 8 1153 206 62 31 0 chr5 74497654 74497686 -78039573 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 1153 326 313 137 20 chr5 74497725 74497878 -78039381 - L1ME2z LINE L1 -905 5241 5071 8 1153 1017 157 45 15 chr5 74497936 74498136 -78039123 + MTC LTR MaLR 1 206 -215 8 1153 1144 83 51 0 chr5 74498138 74498294 -78038965 + B2_Mm2 SINE B2 1 164 -31 8 1153 596 37 24 0 chr5 74498296 74498378 -78038881 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 8 1153 864 202 60 41 chr5 74498378 74498591 -78038668 + MTC LTR MaLR 198 407 -12 8 1153 1209 189 19 0 chr5 74498998 74499210 -78038049 + B3 SINE B2 1 216 0 8 1153 842 168 21 0 chr5 74499475 74499618 -78037641 + B1_Mur4 SINE Alu 5 150 0 9 1153 189 74 0 0 chr5 74499631 74499658 -78037601 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1153 344 267 13 0 chr5 74499776 74499851 -78037408 + MLT1D LTR MaLR 70 145 -360 9 1153 793 139 58 7 chr5 74499861 74499999 -78037260 - RMER6C LTR ERVK 0 690 546 9 1153 241 207 52 0 chr5 74500000 74500058 -78037201 - RMER6C LTR ERVK -146 544 484 1 1153 270 152 0 0 chr5 74500067 74500126 -78037133 + (AACTG)n Simple_repeat Simple_repeat 2 60 0 2 1153 2157 120 33 3 chr5 74500183 74500517 -78036742 - RMER6C LTR ERVK -346 344 1 1 1153 662 328 75 24 chr5 74500533 74500827 -78036432 + MLT1D LTR MaLR 196 504 -1 3 1153 779 181 0 0 chr5 74501222 74501349 -78035910 + B1_Mus2 SINE Alu 9 135 -12 4 1153 234 0 0 0 chr5 74501349 74501375 -78035884 + (GGA)n Simple_repeat Simple_repeat 2 27 0 5 1153 379 275 0 101 chr5 74501750 74501908 -78035351 + B1F SINE Alu 1 142 -7 6 1153 514 239 104 87 chr5 74501959 74502113 -78035146 + B3A SINE B2 2 157 -38 7 1153 369 62 0 0 chr5 74502113 74502161 -78035098 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1153 375 239 104 87 chr5 74502161 74502189 -78035070 + B2_Mm2 SINE B2 158 186 -9 7 1153 1496 174 4 20 chr5 74502232 74502484 -78034775 + RLTR17 LTR ERVK 200 447 -245 9 1153 260 231 0 0 chr5 74502455 74502507 -78034752 + BGLII_B LTR ERVK 54 105 -336 1 1153 2054 138 3 21 chr5 74502507 74502832 -78034427 + Lx4A LINE L1 6522 6840 -218 1 1153 1033 222 5 9 chr5 74502831 74503045 -78034214 + Lx2B LINE L1 6619 6831 -169 1 1153 522 0 0 0 chr5 74503212 74503270 -78033989 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1153 561 191 11 0 chr5 74503342 74503436 -78033823 + RLTR17 LTR ERVK 200 294 -398 1 1153 1091 179 144 40 chr5 74504781 74505108 -78032151 + ORR1C1 LTR MaLR 16 376 -2 1 1153 227 79 26 0 chr5 74505239 74505277 -78031982 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1153 548 148 53 6 chr5 74505303 74505473 -78031786 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1153 558 221 37 22 chr5 74505473 74505607 -78031652 + ID_B1 SINE B4 88 223 -1 1 1153 698 277 128 9 chr5 74505610 74506050 -78031209 - L1MB3 LINE L1 -20 6160 5663 1 1153 264 239 32 177 chr5 74506105 74506263 -78030996 - RLTR25B LTR ERVK -453 575 441 1 1153 839 200 0 27 chr5 74506153 74506302 -78030957 - B1_Mur2 SINE Alu -2 147 3 2 1153 518 309 60 12 chr5 74506334 74506501 -78030758 + MER5B DNA MER1_type 4 178 0 2 1153 621 325 37 82 chr5 74506527 74506717 -78030542 + ORR1E LTR MaLR 1 181 -178 2 1153 657 38 0 0 chr5 74506717 74506797 -78030462 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 2 1153 621 325 37 82 chr5 74506797 74506982 -78030277 + ORR1E LTR MaLR 182 359 0 2 1153 242 292 84 54 chr5 74507141 74507380 -78029879 + RMER17C LTR ERVK 123 368 -42 2 1153 280 277 15 0 chr5 74507467 74507532 -78029727 + B4 SINE B4 81 146 -146 2 1153 579 202 0 0 chr5 74507476 74507575 -78029684 + PB1D10 SINE Alu 6 104 -13 2 1153 212 279 0 0 chr5 74507790 74507833 -78029426 + MIR SINE MIR 198 240 -22 2 1153 2255 148 51 5 chr5 74507969 74508344 -78028915 - ORR1B1 LTR MaLR 0 394 3 2 1153 313 174 174 0 chr5 74508847 74508916 -78028343 - PB1D9 SINE Alu -35 85 5 2 1153 216 288 15 15 chr5 74509075 74509142 -78028117 + B4 SINE B4 1 67 -225 3 1153 506 311 55 89 chr5 74509253 74509546 -78027713 + B4A SINE B4 10 292 0 3 1153 446 120 50 43 chr5 74509552 74509838 -78027421 + (CA)n Simple_repeat Simple_repeat 1 288 0 3 1153 192 327 19 29 chr5 74510181 74510285 -78026974 + L2c LINE L2 3039 3141 -246 3 1153 561 273 45 56 chr5 74510699 74510897 -78026362 - MLT2B4 LTR ERVL -349 207 12 3 1153 972 106 114 36 chr5 74510990 74511157 -78026102 + B2_Mm2 SINE B2 1 180 -15 3 1153 402 21 0 0 chr5 74511157 74511204 -78026055 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1153 844 204 24 6 chr5 74511219 74511387 -78025872 + B3A SINE B2 28 198 0 3 1153 210 196 54 0 chr5 74511575 74511631 -78025628 - L2 LINE L2 -1890 1529 1471 3 1153 391 333 35 7 chr5 74511692 74511834 -78025425 - B1_Mur4 SINE Alu 0 150 5 3 1153 625 274 9 24 chr5 74511700 74511868 -78025391 - ID_B1 SINE B4 -73 219 58 4 1153 638 247 68 63 chr5 74512961 74513151 -78024108 + B3 SINE B2 2 192 -24 4 1153 412 222 50 28 chr5 74513367 74513486 -78023773 - B1F SINE Alu -5 144 24 4 1153 286 219 33 69 chr5 74513508 74513610 -78023649 - PB1D7 SINE Alu 0 120 23 4 1153 270 277 13 133 chr5 74513878 74514028 -78023231 + L1MC4 LINE L1 6655 6786 -1256 4 1153 414 0 0 0 chr5 74514032 74514078 -78023181 + (TATG)n Simple_repeat Simple_repeat 2 47 0 4 1153 956 160 0 31 chr5 74514081 74514242 -78023017 - B2_Mm2 SINE B2 -38 157 2 4 1153 22 0 0 0 chr5 74514253 74514275 -78022984 + AT_rich Low_complexity Low_complexity 1 22 0 4 1153 261 236 177 26 chr5 74514325 74514438 -78022821 + L1MC4 LINE L1 6835 6964 -918 4 1153 264 30 0 0 chr5 74514494 74514527 -78022732 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1153 509 216 0 11 chr5 74514706 74514795 -78022464 + B3 SINE B2 1 88 -128 4 1153 354 215 0 0 chr5 74514811 74514890 -78022369 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 1153 351 0 0 0 chr5 74515270 74515309 -78021950 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1153 537 322 0 0 chr5 74515487 74515630 -78021629 - B1_Mur1 SINE Alu -5 144 2 5 1153 1131 98 43 0 chr5 74515639 74515803 -78021456 - B2_Mm1t SINE B2 -22 171 1 5 1153 929 284 83 54 chr5 74515847 74516197 -78021062 + MTD LTR MaLR 1 360 -59 5 1153 2789 133 88 77 chr5 74516200 74516763 -78020496 + MT2B LTR ERVL 1 543 -58 5 1153 333 0 0 0 chr5 74516766 74516803 -78020456 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1153 536 152 0 10 chr5 74516805 74516905 -78020354 + (TA)n Simple_repeat Simple_repeat 2 100 0 5 1153 255 61 0 0 chr5 74516907 74516940 -78020319 + MT2B LTR ERVL 542 574 -10 5 1153 904 169 169 0 chr5 74517241 74517425 -78019834 - URR1B DNA MER1_type -4 221 7 5 1153 297 0 0 0 chr5 74517843 74517876 -78019383 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1153 490 318 87 55 chr5 74518128 74518494 -78018765 - MER34-int LTR ERV1 -5 8202 7825 6 1153 627 240 124 67 chr5 74519341 74519551 -78017708 - MTD LTR MaLR 0 419 198 6 1153 1599 161 115 47 chr5 74519594 74519934 -78017325 + ORR1D1 LTR MaLR 1 363 -11 6 1153 658 243 5 28 chr5 74519937 74520095 -78017164 - MTD LTR MaLR -226 193 13 6 1153 261 281 116 80 chr5 74520274 74520386 -78016873 - B1F1 SINE Alu -4 116 1 6 1153 240 250 19 0 chr5 74520416 74520468 -78016791 + B1_Mus1 SINE Alu 2 54 -94 6 1153 821 179 0 54 chr5 74520540 74520688 -78016571 - B1_Mur4 SINE Alu -10 140 1 6 1153 249 33 0 0 chr5 74520902 74520932 -78016327 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 6 1153 3527 104 36 2 chr5 74520932 74521435 -78015824 - Lx3A LINE L1 -14 6967 6448 6 1153 1254 48 0 0 chr5 74521890 74522035 -78015224 - B1_Mus2 SINE Alu -1 146 2 6 1153 228 67 0 0 chr5 74522038 74522068 -78015191 + (T)n Simple_repeat Simple_repeat 1 30 0 6 1153 743 158 7 18 chr5 74522079 74522240 -78015019 - B1_Mur3 SINE Alu 0 150 1 7 1153 649 314 12 0 chr5 74522990 74523162 -78014097 + ID_B1 SINE B4 46 219 -5 7 1153 284 262 0 47 chr5 74523222 74523286 -78013973 + B4A SINE B4 230 290 -2 7 1153 878 216 54 29 chr5 74523638 74523843 -78013416 + B3 SINE B2 1 210 -6 7 1153 377 195 188 39 chr5 74524208 74524336 -78012923 + B1F1 SINE Alu 1 147 -2 7 1153 1316 228 60 40 chr5 74524913 74525265 -78011994 - ORR1D2 LTR MaLR -7 363 5 7 1153 535 265 53 8 chr5 74525594 74525727 -78011532 - ID_B1 SINE B4 -2 222 84 7 1153 200 326 100 40 chr5 74525837 74525987 -78011272 + MIR SINE MIR 35 193 -69 7 1153 771 156 0 0 chr5 74526400 74526522 -78010737 + B1F2 SINE Alu 28 149 0 7 1153 640 111 19 0 chr5 74526522 74526630 -78010629 + (GA)n Simple_repeat Simple_repeat 2 111 0 7 1153 878 257 9 24 chr5 74526857 74527068 -78010191 + B3 SINE B2 1 208 -8 8 1153 369 0 0 0 chr5 74527245 74527286 -78009973 + (TTA)n Simple_repeat Simple_repeat 2 42 0 8 1153 715 121 50 41 chr5 74527286 74527407 -78009852 - B1_Mus1 SINE Alu -25 123 2 8 1153 423 259 162 34 chr5 74527407 74527454 -78009805 - B4 SINE B4 -195 97 32 8 1153 289 250 0 15 chr5 74527415 74527480 -78009779 - PB1D10 SINE Alu -7 110 47 8 1153 359 152 0 33 chr5 74527611 74527672 -78009587 - B1F1 SINE Alu 0 149 91 8 1153 346 225 125 0 chr5 74528128 74528208 -78009051 - B1_Mur3 SINE Alu -59 90 1 8 1153 477 0 0 0 chr5 74528689 74528742 -78008517 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1153 239 328 96 15 chr5 74529192 74529328 -78007931 + MIRb SINE MIR 15 161 -107 8 1153 410 301 51 7 chr5 74529581 74529718 -78007541 - B1F SINE Alu -6 143 1 8 1153 405 0 0 0 chr5 74529733 74529778 -78007481 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1153 232 338 0 0 chr5 74530049 74530123 -78007136 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 9 1153 528 200 0 0 chr5 74530142 74530262 -78006997 + (TCCA)n Simple_repeat Simple_repeat 4 123 0 9 1153 269 306 39 69 chr5 74530468 74530598 -78006661 + ORR1E LTR MaLR 24 149 -210 9 1153 499 250 158 13 chr5 74531056 74531214 -78006045 - B3A SINE B2 -16 182 2 9 1153 244 157 14 28 chr5 74531219 74531291 -78005968 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 9 1153 606 270 8 23 chr5 74531293 74531422 -78005837 - ID_B1 SINE B4 -14 210 84 9 1153 279 323 10 0 chr5 74531434 74531530 -78005729 - L1M5 LINE L1 -358 5821 5725 9 1153 311 308 61 25 chr5 74531557 74531720 -78005539 + LTR33C LTR ERVL 131 299 -330 9 1153 313 280 111 47 chr5 74531806 74531978 -78005281 + LTR33C LTR ERVL 432 614 -15 9 1153 399 276 0 0 chr5 74532026 74532102 -78005157 + RSINE1 SINE B4 74 149 -16 9 1153 211 255 0 0 chr5 74532105 74532152 -78005107 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1153 385 257 55 45 chr5 74532246 74532356 -78004903 + RSINE1 SINE B4 5 115 -50 1 1153 387 344 162 24 chr5 74532385 74532638 -78004621 - Charlie10 DNA MER1_type -2458 364 77 1 1153 249 108 0 0 chr5 74532809 74532846 -78004413 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1153 266 279 102 113 chr5 74532870 74532934 -78004325 - B2_Mm1a SINE B2 -4 189 121 1 1153 243 0 0 0 chr5 74532934 74532961 -78004298 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1153 539 224 22 22 chr5 74532961 74533082 -78004177 - B3A SINE B2 -75 123 6 1 1153 2866 92 24 19 chr5 74533473 74533883 -78003376 - MTC LTR MaLR 0 421 10 1 1153 250 309 78 47 chr5 74534021 74534150 -78003109 + MIR SINE MIR 129 261 -1 1 1153 1133 261 20 114 chr5 74534188 74534582 -78002677 + MTE2a LTR MaLR 6 362 -17 1 1153 671 236 16 0 chr5 74534849 74534976 -78002283 + RSINE1 SINE B4 2 130 -35 1 1153 22 0 0 0 chr5 74535109 74535131 -78002128 + AT_rich Low_complexity Low_complexity 1 22 0 1 1153 232 238 24 59 chr5 74535131 74535216 -78002043 - ID4_ SINE ID -1 82 1 1 1153 609 210 64 21 chr5 74535719 74535739 -78001520 - B1_Mur3 SINE Alu -1 148 126 1 1153 405 0 0 0 chr5 74535739 74535784 -78001475 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1153 405 0 0 0 chr5 74535784 74535828 -78001431 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1153 609 210 64 21 chr5 74535828 74535947 -78001312 - B1_Mur3 SINE Alu -24 125 3 1 1153 708 74 0 0 chr5 74536080 74536175 -78001084 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 1 1153 529 218 105 0 chr5 74536230 74536363 -78000896 - B1F SINE Alu -1 148 2 1 1153 438 316 35 0 chr5 74536426 74536597 -78000662 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 1153 491 234 107 21 chr5 74536609 74536749 -78000510 - RSINE1 SINE B4 -2 163 12 1 1153 343 223 68 51 chr5 74536918 74536982 -78000277 - HAL1-3A_ME LINE L1 -762 2096 2030 1 1153 322 186 42 14 chr5 74536982 74537053 -78000206 - ID4 SINE ID -9 74 2 1 1153 343 223 68 51 chr5 74537053 74537106 -78000153 - HAL1-3A_ME LINE L1 -829 2029 1977 1 1153 795 127 29 6 chr5 74537133 74537307 -77999952 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1153 877 157 23 4 chr5 74537320 74537583 -77999676 + (TG)n Simple_repeat Simple_repeat 1 268 0 1 1153 302 186 14 14 chr5 74537583 74537654 -77999605 + (TATG)n Simple_repeat Simple_repeat 1 71 0 1 1153 583 185 11 27 chr5 74537663 74537846 -77999413 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1153 330 244 156 39 chr5 74538049 74538177 -77999082 - B3 SINE B2 -8 208 66 1 1153 271 301 75 0 chr5 74538256 74538349 -77998910 + MLT1N2 LTR MaLR 3 102 -460 1 1153 249 350 0 37 chr5 74538714 74538821 -77998438 - MLT1A0 LTR MaLR 0 365 263 1 1153 210 329 0 0 chr5 74538821 74538894 -77998365 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1153 919 152 0 0 chr5 74538965 74539103 -77998156 + B1_Mur3 SINE Alu 1 138 -11 1 1153 246 81 0 0 chr5 74539103 74539140 -77998119 + (CAA)n Simple_repeat Simple_repeat 2 38 0 1 1153 290 273 141 0 chr5 74539192 74539291 -77997968 + PB1 SINE Alu 13 125 -2 1 1153 336 296 17 9 chr5 74539377 74539493 -77997766 - PB1D10 SINE Alu 0 117 1 1 1153 318 297 127 13 chr5 74540398 74540548 -77996711 - MER2B DNA MER2_type -10 326 160 1 1153 269 276 64 112 chr5 74540530 74540738 -77996521 - B4A SINE B4 -103 189 2 1 1153 523 192 146 28 chr5 74541103 74541284 -77995975 - ORR1D2 LTR MaLR -1 383 171 1 1153 711 0 0 0 chr5 74541490 74541569 -77995690 + (TTC)n Simple_repeat Simple_repeat 3 81 0 1 1153 456 292 0 0 chr5 74541569 74541682 -77995577 - PB1D10 SINE Alu -4 113 1 1 1153 228 333 132 9 chr5 74541819 74541925 -77995334 + MLT1J1 LTR MaLR 75 193 -251 1 1153 2439 111 59 3 chr5 74542127 74542499 -77994760 - ORR1B1 LTR MaLR 0 394 2 1 1153 465 307 71 0 chr5 74543201 74543328 -77993931 + B1F1 SINE Alu 14 149 0 1 1153 191 323 43 78 chr5 74544529 74544670 -77992589 + L2 LINE L2 2299 2434 -985 1 1153 510 296 176 36 chr5 74544694 74544996 -77992263 - ORR1E LTR MaLR -14 345 2 1 1153 578 231 0 0 chr5 74545023 74545140 -77992119 + PB1D9 SINE Alu 1 117 -3 1 1153 192 40 0 0 chr5 74545378 74545403 -77991856 + (CAGT)n Simple_repeat Simple_repeat 2 26 0 1 1153 331 285 53 107 chr5 74545999 74546168 -77991091 + MTEb LTR MaLR 1 160 -219 1 1153 355 345 141 0 chr5 74546744 74546886 -77990373 + B3A SINE B2 9 170 -28 1 1153 3103 34 3 3 chr5 74546985 74547342 -77989917 + IAPEY2_LTR LTR ERVK 1 357 0 1 1153 1212 271 38 29 chr5 74547686 74548032 -77989227 + MTEb LTR MaLR 10 358 -21 1 1153 675 0 0 0 chr5 74548662 74548737 -77988522 + (TTTC)n Simple_repeat Simple_repeat 4 78 0 1 1153 531 0 0 0 chr5 74549154 74549213 -77988046 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 1 1153 417 39 0 0 chr5 74549893 74549944 -77987315 + (GAAA)n Simple_repeat Simple_repeat 1 51 0 1 1153 405 0 0 0 chr5 74550186 74550231 -77987028 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1153 1130 70 0 7 chr5 74550231 74550376 -77986883 - B1_Mm SINE Alu -2 145 2 1 1153 1049 238 150 88 chr5 74551250 74551784 -77985475 + RMER2 LTR ERV1 1 567 0 1 1153 523 325 76 34 chr5 74552207 74552443 -77984816 - MT2A LTR ERVL -79 454 209 1 1153 262 250 27 27 chr5 74552853 74552927 -77984332 - PB1D9 SINE Alu -7 113 40 1 1153 562 261 179 47 chr5 74553047 74553342 -77983917 + MLT2D LTR ERVL 23 362 -35 1 1153 961 305 64 0 chr5 74553409 74553704 -77983555 - MER2 DNA MER2_type -8 337 24 1 1153 1380 57 6 6 chr5 74553712 74553887 -77983372 - B2_Mm2 SINE B2 -20 175 1 1 1153 733 266 95 21 chr5 74553942 74554184 -77983075 - Tigger7 DNA MER2_type -100 2391 2132 1 1153 717 315 143 22 chr5 74554185 74554458 -77982801 - Tigger7 DNA MER2_type -2184 307 2 1 1153 514 296 70 19 chr5 74554564 74554877 -77982382 - L1MC5 LINE L1 -68 7893 7565 1 1153 278 316 87 46 chr5 74555125 74555344 -77981915 - L1ME4a LINE L1 -117 6007 5780 1 1153 456 306 129 88 chr5 74556522 74556895 -77980364 - MLT1B LTR MaLR -2 388 1 1 1153 605 173 14 106 chr5 74556917 74557059 -77980200 + B1_Mur1 SINE Alu 2 130 -19 1 1153 341 162 0 14 chr5 74559688 74559757 -77977502 + CT-rich Low_complexity Low_complexity 2 69 0 1 1153 290 351 97 75 chr5 74559875 74560143 -77977116 + MLT1J LTR MaLR 105 378 -134 1 1153 267 364 92 7 chr5 74561032 74561173 -77976086 - MIR SINE MIR -25 237 85 1 1153 829 167 0 18 chr5 74561310 74561481 -77975778 + CT-rich Low_complexity Low_complexity 2 169 0 1 1153 360 304 150 59 chr5 74562034 74562321 -77974938 + L2 LINE L2 2408 2720 -699 1 1153 863 256 24 10 chr5 74562541 74562750 -77974509 - B3 SINE B2 -3 213 2 1 1153 253 309 81 58 chr5 74563132 74563218 -77974041 + LTR16A1 LTR ERVL 194 281 -175 1 1153 204 125 0 0 chr5 74563408 74563440 -77973819 + (TTC)n Simple_repeat Simple_repeat 2 33 0 1 1153 285 29 0 0 chr5 74563593 74563627 -77973632 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1153 25 31 0 0 chr5 74563705 74563737 -77973522 + AT_rich Low_complexity Low_complexity 1 32 0 1 1153 180 111 0 0 chr5 74564178 74564205 -77973054 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1153 441 295 54 8 chr5 74564354 74564484 -77972775 + RSINE1 SINE B4 3 138 -27 1 1153 238 322 92 21 chr5 74564564 74564707 -77972552 - MIR SINE MIR -82 186 26 1 1153 364 83 0 0 chr5 74564760 74564808 -77972451 - B1_Mur4 SINE Alu -6 144 97 1 1153 795 336 98 37 chr5 74564974 74565435 -77971824 - MLT1F LTR MaLR 0 548 60 1 1153 285 297 158 62 chr5 74565513 74565786 -77971473 - RMER12 LTR ERVK -332 990 692 1 1153 375 324 123 7 chr5 74566477 74566623 -77970636 - B4A SINE B4 -8 284 122 1 1153 445 302 17 17 chr5 74567325 74567338 -77969921 - B4A SINE B4 -174 118 106 1 1153 687 108 0 0 chr5 74567338 74567440 -77969819 + (TATG)n Simple_repeat Simple_repeat 1 102 0 1 1153 445 302 17 17 chr5 74567440 74567544 -77969715 - B4A SINE B4 -187 105 1 1 1153 433 197 0 26 chr5 74567614 74567692 -77969567 - ID4_ SINE ID -3 80 5 1 1153 328 326 0 77 chr5 74567963 74568106 -77969153 + LTR33A_ LTR ERVL 95 226 -305 1 1153 747 0 0 0 chr5 74568130 74568213 -77969046 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 1 1153 834 142 7 43 chr5 74568922 74569062 -77968197 + B1_Mur4 SINE Alu 16 150 0 1 1153 26 30 0 0 chr5 74569066 74569099 -77968160 + AT_rich Low_complexity Low_complexity 1 33 0 1 1153 588 268 90 23 chr5 74570098 74570354 -77966905 + MER44A DNA MER2_type 1 273 -66 1 1153 243 88 0 0 chr5 74572361 74572395 -77964864 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1153 213 338 44 0 chr5 74572397 74572465 -77964794 - RSINE1 SINE B4 -13 152 82 1 1153 195 42 0 0 chr5 74572572 74572596 -77964663 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1153 423 0 0 0 chr5 74572596 74572642 -77964617 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1153 211 280 26 26 chr5 74572667 74572744 -77964515 - L2a LINE L2 -5 3421 3345 1 1153 206 255 0 19 chr5 74572841 74572893 -77964366 - MIR SINE MIR -115 147 97 1 1153 478 228 40 0 chr5 74572902 74573003 -77964256 - PB1D10 SINE Alu 0 117 13 1 1153 1115 176 24 10 chr5 74573778 74573985 -77963274 - URR1A DNA MER1_type 0 226 17 1 1153 773 239 69 10 chr5 74574444 74574647 -77962612 + B3 SINE B2 1 215 -1 1 1153 216 374 11 11 chr5 74574841 74574933 -77962326 + MIR SINE MIR 41 132 -76 1 1153 509 275 266 17 chr5 74575376 74575672 -77961587 - ORR1D2 LTR MaLR 0 370 1 1 1153 375 317 45 65 chr5 74575989 74576188 -77961071 + MLT1K LTR MaLR 373 567 -28 1 1153 270 0 0 0 chr5 74577308 74577338 -77959921 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 1 1153 312 365 39 62 chr5 74578115 74578155 -77959104 - B4 SINE B4 -56 236 154 2 1153 481 209 0 10 chr5 74578155 74578252 -77959007 - B1_Mur2 SINE Alu -42 107 17 2 1153 312 365 39 62 chr5 74578252 74578293 -77958966 - B4 SINE B4 -56 153 63 2 1153 596 296 15 73 chr5 74578570 74578774 -77958485 - B3A SINE B2 -6 192 1 2 1153 434 284 42 33 chr5 74579729 74579907 -77957352 - B4 SINE B4 0 292 116 2 1154 528 195 0 0 chr5 74580046 74580205 -77957054 + (CA)n Simple_repeat Simple_repeat 2 160 0 2 1154 306 151 0 19 chr5 74580208 74580262 -77956997 + HAL1-3A_ME LINE L1 1976 2028 -830 2 1154 366 240 0 0 chr5 74580289 74580439 -77956820 + (CA)n Simple_repeat Simple_repeat 1 150 0 2 1154 198 297 143 56 chr5 74580630 74580826 -77956433 + MIR SINE MIR 31 243 -19 2 1154 935 117 159 6 chr5 74580896 74581059 -77956200 + B2_Mm2 SINE B2 2 189 -6 2 1154 182 250 21 0 chr5 74581972 74582020 -77955239 - L2a LINE L2 -104 3322 3274 2 1154 688 283 74 17 chr5 74582106 74582336 -77954923 + MER2 DNA MER2_type 100 342 -3 2 1154 5419 120 30 30 chr5 74583114 74584049 -77953210 + Lx LINE L1 5720 6654 0 2 1154 276 100 0 0 chr5 74584049 74584089 -77953170 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1154 189 0 0 0 chr5 74585357 74585378 -77951881 + (CCCCCA)n Simple_repeat Simple_repeat 1 21 0 2 1154 327 168 23 70 chr5 74586746 74586874 -77950385 - RMER17A LTR ERVK -295 456 335 2 1154 399 41 0 0 chr5 74586945 74586994 -77950265 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1154 203 138 0 0 chr5 74587977 74588006 -77949253 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 2 1154 234 0 0 0 chr5 74588108 74588134 -77949125 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1154 863 284 18 32 chr5 74588147 74588424 -77948835 - B4A SINE B4 -18 274 2 2 1154 287 338 29 44 chr5 74588531 74588738 -77948521 + MLT1H1 LTR MaLR 9 258 -321 2 1154 411 21 0 0 chr5 74589312 74589360 -77947899 + (TCC)n Simple_repeat Simple_repeat 3 50 0 2 1154 219 114 0 0 chr5 74589362 74589397 -77947862 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1154 221 0 0 33 chr5 74592309 74592339 -77944920 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 2 1154 207 0 0 0 chr5 74593197 74593220 -77944039 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1154 185 200 0 62 chr5 74595616 74595664 -77941595 - MIRb SINE MIR -83 185 141 2 1154 205 321 128 0 chr5 74597242 74597351 -77939908 - MIRb SINE MIR -61 207 85 2 1154 243 271 34 0 chr5 74599053 74599112 -77938147 + ORR1E LTR MaLR 1 61 -298 2 1154 321 281 12 12 chr5 74599424 74599507 -77937752 + MTEb LTR MaLR 279 361 -18 2 1154 720 143 0 21 chr5 74601296 74601439 -77935820 + CT-rich Low_complexity Low_complexity 1 140 0 2 1154 387 0 0 0 chr5 74603734 74603777 -77933482 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1154 188 264 38 0 chr5 74604847 74604900 -77932359 + L2c LINE L2 3111 3165 -222 2 1154 1138 181 5 33 chr5 74605285 74605497 -77931762 - B3 SINE B2 -9 207 2 2 1154 365 318 62 56 chr5 74607833 74607993 -77929266 + ORR1E LTR MaLR 28 196 -163 2 1154 436 254 193 7 chr5 74609709 74609844 -77927415 + RSINE1 SINE B4 4 163 -2 2 1154 192 77 0 0 chr5 74609856 74609882 -77927377 + (CAA)n Simple_repeat Simple_repeat 3 28 0 2 1154 919 137 27 0 chr5 74609988 74610134 -77927125 - B1_Mur4 SINE Alu 0 150 1 2 1154 1116 239 172 0 chr5 74610220 74610568 -77926691 - Lx9 LINE L1 -147 7497 7090 2 1154 307 307 0 14 chr5 74611019 74611158 -77926101 + G-rich Low_complexity Low_complexity 3 139 0 2 1154 294 143 20 0 chr5 74611891 74611940 -77925319 - L2a LINE L2 -2 3424 3375 2 1154 268 131 36 96 chr5 74612160 74612215 -77925044 - MTD LTR MaLR -16 403 325 2 1154 1099 83 14 0 chr5 74612215 74612352 -77924907 + B1_Mus2 SINE Alu 1 139 -8 2 1154 382 61 15 15 chr5 74612352 74612419 -77924840 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 2 1154 268 113 34 102 chr5 74612425 74612443 -77924816 - MTD LTR MaLR -53 366 349 2 1154 2485 64 0 38 chr5 74612444 74612577 -77924682 + ORR1A2 LTR MaLR 1 127 -200 2 1154 2885 77 0 0 chr5 74612577 74612942 -77924317 - RLTR8 LTR ERVK 0 365 1 2 1154 2485 64 0 38 chr5 74612942 74613148 -77924111 + ORR1A2 LTR MaLR 128 327 0 2 1154 879 235 239 15 chr5 74613148 74613409 -77923850 - MTD LTR MaLR -97 322 3 2 1154 255 263 51 26 chr5 74614085 74614163 -77923096 + MIR3 SINE MIR 110 189 -19 2 1154 704 241 28 0 chr5 74616652 74616797 -77920462 - B1F SINE Alu 0 149 1 2 1154 273 279 15 0 chr5 74616807 74616875 -77920384 - PB1D10 SINE Alu 0 117 49 2 1154 276 238 19 40 chr5 74616960 74617071 -77920188 - MIR SINE MIR -97 179 70 2 1154 1504 302 137 23 chr5 74617280 74617938 -77919321 + MER44C DNA MER2_type 1 733 0 2 1154 396 0 0 0 chr5 74618068 74618112 -77919147 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1154 243 0 0 0 chr5 74618112 74618138 -77919121 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1154 1164 65 0 0 chr5 74618375 74618514 -77918745 + B1_Mus2 SINE Alu 1 139 -8 2 1154 429 36 0 0 chr5 74618514 74618569 -77918690 + (CCAA)n Simple_repeat Simple_repeat 2 56 0 2 1154 201 211 0 0 chr5 74620251 74620303 -77916956 + CT-rich Low_complexity Low_complexity 3 54 0 2 1154 248 223 103 31 chr5 74621681 74621778 -77915481 - Lx8 LINE L1 -2 7471 7368 2 1154 1689 174 119 29 chr5 74622935 74623126 -77914133 - ORR1C1 LTR MaLR 0 378 161 2 1154 411 68 0 0 chr5 74623126 74623185 -77914074 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1154 1689 174 119 29 chr5 74623185 74623336 -77913923 - ORR1C1 LTR MaLR -218 160 5 2 1154 298 228 208 0 chr5 74623723 74623824 -77913435 + L1ME4a LINE L1 5960 6081 -43 2 1154 805 267 119 55 chr5 74624070 74624415 -77912844 - MTEa LTR MaLR -12 367 1 2 1154 506 301 121 56 chr5 74624428 74624807 -77912452 + MLT1J LTR MaLR 150 493 -19 2 1154 255 170 0 0 chr5 74624959 74625006 -77912253 + GA-rich Low_complexity Low_complexity 3 49 0 2 1154 231 322 109 8 chr5 74625340 74625459 -77911800 - Arthur1 DNA Tip100 -174 3773 3643 2 1154 236 303 79 32 chr5 74625555 74625681 -77911578 + LTR50 LTR ERVL 104 235 -560 2 1154 1284 255 69 18 chr5 74626620 74626952 -77910307 - LTR87 LTR ERVL? 0 624 276 2 1154 227 170 10 29 chr5 74627274 74627377 -77909882 + A-rich Low_complexity Low_complexity 1 101 0 2 1154 341 225 0 0 chr5 74627399 74627469 -77909790 - Lx8 LINE L1 -245 7228 7147 2 1154 385 279 32 8 chr5 74628824 74628947 -77908312 + ORSL DNA Tip100 12 137 -138 2 1154 302 264 125 53 chr5 74629047 74629199 -77908060 - MIR SINE MIR -63 199 37 2 1154 292 279 0 0 chr5 74629987 74630055 -77907204 - ORR1D2 LTR MaLR -247 123 56 2 1154 209 382 28 47 chr5 74630181 74630288 -77906971 - L2b LINE L2 -13 3362 3258 2 1154 225 175 35 17 chr5 74630385 74630443 -77906816 - MIRc SINE MIR -133 135 77 2 1154 333 317 21 158 chr5 74633174 74633414 -77903845 - L1MB8 LINE L1 -316 5862 5656 2 1154 370 289 93 4 chr5 74633414 74633558 -77903701 - L1M3 LINE L1 -585 5595 5445 2 1154 1048 227 179 23 chr5 74633869 74634176 -77903083 + ORR1E LTR MaLR 5 359 0 2 1154 327 326 113 96 chr5 74634194 74634557 -77902702 - MLT1A1 LTR MaLR -15 393 25 2 1154 546 16 0 0 chr5 74634979 74635042 -77902217 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 2 1154 780 156 31 8 chr5 74635090 74635219 -77902040 - B1_Mus1 SINE Alu -12 136 5 2 1154 256 369 66 16 chr5 74635957 74636139 -77901120 - MIRc SINE MIR -42 226 36 2 1154 1022 325 74 22 chr5 74638108 74638567 -77898692 - Tigger13a DNA MER2_type -276 495 13 2 1154 287 365 16 57 chr5 74639210 74639402 -77897857 - MARNA DNA Mariner -353 233 50 2 1154 207 0 0 0 chr5 74639626 74639649 -77897610 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1154 279 54 0 0 chr5 74639992 74640029 -77897230 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1154 563 339 77 23 chr5 74640037 74640297 -77896962 - B4A SINE B4 -8 284 11 2 1154 268 293 24 24 chr5 74641414 74641498 -77895761 - Charlie22a DNA MER1_type -381 110 27 2 1154 1168 133 111 19 chr5 74644334 74644541 -77892718 + URR1A DNA MER1_type 1 226 0 2 1154 364 299 208 6 chr5 74644552 74644720 -77892539 + MER3 DNA MER1_type 4 205 -4 2 1154 253 294 24 0 chr5 74644832 74644917 -77892342 - L1ME1 LINE L1 -63 6116 6030 2 1154 180 176 0 0 chr5 74645057 74645091 -77892168 + CT-rich Low_complexity Low_complexity 2 35 0 2 1154 792 98 23 0 chr5 74645094 74645227 -77892032 - Lx LINE L1 0 6654 6519 2 1154 868 259 61 32 chr5 74647989 74648236 -77889023 + MER2 DNA MER2_type 23 276 -69 2 1154 271 294 93 3 chr5 74648455 74648567 -77888692 - MIRb SINE MIR -69 193 70 2 1154 471 238 99 8 chr5 74649431 74649562 -77887697 + B4A SINE B4 1 143 -149 2 1154 304 282 0 34 chr5 74650670 74650758 -77886501 + MLT1A1 LTR MaLR 320 404 -4 2 1154 189 0 0 0 chr5 74651718 74651739 -77885520 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1154 416 285 102 43 chr5 74651996 74652036 -77885223 + RMER15 LTR ERVL 363 400 -175 2 1154 2237 142 126 0 chr5 74652036 74652410 -77884849 - MTC LTR MaLR 0 421 1 2 1154 416 285 102 43 chr5 74652410 74652556 -77884703 + RMER15 LTR ERVL 401 560 -15 2 1154 313 250 71 20 chr5 74652570 74652668 -77884591 - MLT1A1 LTR MaLR 0 408 306 2 1154 263 304 38 12 chr5 74652699 74652779 -77884480 - MLT1A1 LTR MaLR -227 181 100 2 1154 333 0 0 0 chr5 74653700 74653737 -77883522 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 1154 369 0 0 0 chr5 74653737 74653777 -77883482 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1154 266 320 50 0 chr5 74653797 74653897 -77883362 - B1_Mus1 SINE Alu -43 105 1 2 1154 580 56 0 0 chr5 74655376 74655448 -77881811 + B1_Mus1 SINE Alu 9 80 -68 3 1154 435 38 0 0 chr5 74655448 74655501 -77881758 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1154 302 329 231 18 chr5 74655528 74655757 -77881502 + L1M5 LINE L1 4637 4914 -1232 3 1154 215 258 102 92 chr5 74656349 74656447 -77880812 + MIRc SINE MIR 37 135 -133 3 1154 445 132 80 0 chr5 74657645 74657736 -77879523 + ORR1C1 LTR MaLR 5 111 -259 3 1154 262 350 34 17 chr5 74659863 74659982 -77877277 - MIRb SINE MIR -9 259 139 3 1154 292 277 71 12 chr5 74660735 74660819 -77876440 - MLT1K LTR MaLR -1 594 506 3 1154 195 333 15 31 chr5 74662585 74662650 -77874609 + L3b LINE CR1 408 471 -11 3 1154 302 376 56 0 chr5 74663064 74663226 -77874033 - MIR SINE MIR -56 206 36 3 1154 203 333 27 14 chr5 74663440 74663513 -77873746 + MER5A DNA MER1_type 113 186 -3 3 1154 528 30 0 0 chr5 74664322 74664388 -77872871 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1154 441 129 0 0 chr5 74664587 74664657 -77872602 + (A)n Simple_repeat Simple_repeat 1 70 0 3 1154 294 295 55 93 chr5 74664869 74665052 -77872207 + MLT1K LTR MaLR 268 443 -152 3 1154 185 241 53 84 chr5 74665891 74665986 -77871273 - L3 LINE CR1 -1868 2621 2530 3 1154 203 292 90 0 chr5 74666230 74666319 -77870940 - L3 LINE CR1 -283 4206 4110 3 1154 3905 31 2 0 chr5 74666863 74667313 -77869946 - L1Md_F3 LINE L1 0 6584 6134 3 1154 194 185 90 30 chr5 74668924 74668991 -77868268 - L3 LINE CR1 -1 4488 4418 3 1154 796 190 204 11 chr5 74670985 74671166 -77866093 + B3 SINE B2 1 216 0 3 1154 420 250 93 63 chr5 74671219 74671482 -77865777 + L1MA8 LINE L1 5992 6278 -34 3 1154 1009 48 0 0 chr5 74671482 74671606 -77865653 + B1_Mus1 SINE Alu 25 148 0 3 1154 684 245 136 31 chr5 74671881 74672138 -77865121 - L1MB3 LINE L1 -58 6125 5842 3 1154 371 367 73 34 chr5 74673695 74674076 -77863183 + MLT1I LTR MaLR 9 404 -7 3 1154 578 109 11 0 chr5 74674305 74674397 -77862862 + (GGA)n Simple_repeat Simple_repeat 3 95 0 3 1154 585 199 35 56 chr5 74675704 74675848 -77861411 + B1F SINE Alu 9 149 0 3 1154 955 155 7 0 chr5 74678060 74678215 -77859044 - URR1A DNA MER1_type 0 226 71 3 1154 299 255 87 10 chr5 74678836 74678939 -77858320 - B3 SINE B2 -105 111 1 3 1154 537 280 112 0 chr5 74678946 74679071 -77858188 - ID_B1 SINE B4 -5 219 81 3 1154 780 302 48 12 chr5 74680676 74680924 -77856335 + RCHARR1 DNA MER1_type 5 261 -713 3 1154 23 33 0 0 chr5 74681723 74681753 -77855506 + AT_rich Low_complexity Low_complexity 1 30 0 3 1154 650 65 11 0 chr5 74684579 74684671 -77852588 + (TTCC)n Simple_repeat Simple_repeat 2 94 0 3 1154 485 358 86 35 chr5 74684749 74685143 -77852116 + MER47B DNA MER2_type 1 414 -4 3 1154 204 216 0 56 chr5 74686004 74686058 -77851201 + CT-rich Low_complexity Low_complexity 3 53 0 3 1154 354 219 89 50 chr5 74686957 74687058 -77850201 - MT2A LTR ERVL -344 189 85 3 1154 636 188 45 30 chr5 74687033 74687165 -77850094 - MT2A LTR ERVL -387 146 13 3 1154 345 186 28 38 chr5 74687232 74687338 -77849921 - Lx5 LINE L1 0 7050 6946 3 1154 1017 171 193 0 chr5 74687404 74687585 -77849674 - B3 SINE B2 0 216 1 3 1154 230 224 41 0 chr5 74688477 74688526 -77848733 + L4 LINE RTE 1971 2021 -8 3 1154 650 324 50 88 chr5 74690165 74690504 -77846755 + ORR1E LTR MaLR 34 359 0 3 1154 2358 120 122 26 chr5 74690924 74691342 -77845917 + Lx2 LINE L1 6540 6997 0 3 1154 368 204 247 0 chr5 74692693 74692786 -77844473 + PB1D10 SINE Alu 1 116 -1 3 1154 291 331 47 8 chr5 74693459 74693587 -77843672 + L2c LINE L2 3026 3158 -229 3 1154 327 296 73 36 chr5 74694615 74694752 -77842507 + Charlie8 DNA MER1_type 86 227 -2201 3 1154 299 272 185 0 chr5 74695132 74695224 -77842035 + PB1D10 SINE Alu 2 110 -7 3 1154 240 159 0 43 chr5 74695184 74695230 -77842029 + ID_B1 SINE B4 180 223 -1 3 1154 245 262 116 45 chr5 74696652 74696764 -77840495 - MIRb SINE MIR -66 202 83 3 1154 189 0 0 0 chr5 74697459 74697480 -77839779 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1154 274 337 66 5 chr5 74697681 74697878 -77839381 + L2 LINE L2 86 294 -3125 3 1154 497 283 104 93 chr5 74699886 74700241 -77837018 - ORR1E LTR MaLR 0 359 1 3 1154 227 203 13 158 chr5 74701030 74701106 -77836153 + L2b LINE L2 3310 3374 -1 3 1154 240 35 0 0 chr5 74702398 74702427 -77834832 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 3 1154 1074 129 35 6 chr5 74702480 74702652 -77834607 - B2_Mm2 SINE B2 -18 177 1 3 1154 180 0 0 0 chr5 74703133 74703153 -77834106 + (TC)n Simple_repeat Simple_repeat 1 20 0 3 1154 246 62 0 0 chr5 74703334 74703366 -77833893 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 3 1154 448 292 56 38 chr5 74704065 74704225 -77833034 + RSINE1 SINE B4 3 165 0 3 1154 356 207 0 44 chr5 74704249 74704340 -77832919 - RMER12 LTR ERVK -466 856 770 3 1154 189 0 0 0 chr5 74704354 74704375 -77832884 + (CATA)n Simple_repeat Simple_repeat 4 24 0 3 1154 453 155 0 72 chr5 74704402 74704569 -77832690 + (CATA)n Simple_repeat Simple_repeat 4 158 0 3 1154 211 109 0 68 chr5 74704594 74704653 -77832606 + (CATA)n Simple_repeat Simple_repeat 4 58 0 3 1154 441 155 0 72 chr5 74704678 74704845 -77832414 + (CATA)n Simple_repeat Simple_repeat 4 158 0 3 1154 207 0 0 0 chr5 74704870 74704893 -77832366 + (CATA)n Simple_repeat Simple_repeat 4 26 0 3 1154 501 147 0 69 chr5 74704918 74705093 -77832166 + (CATA)n Simple_repeat Simple_repeat 4 166 0 3 1154 204 40 0 0 chr5 74705118 74705143 -77832116 + (CATA)n Simple_repeat Simple_repeat 4 28 0 3 1154 1079 82 0 45 chr5 74705163 74705317 -77831942 - B1_Mus2 SINE Alu 0 147 1 3 1154 1639 232 36 8 chr5 74705362 74705719 -77831540 - Lx6 LINE L1 -177 7283 6917 3 1154 214 251 0 4 chr5 74706550 74706616 -77830643 + L2a LINE L2 3316 3417 -9 3 1154 231 36 0 0 chr5 74707897 74707925 -77829334 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3 1154 211 135 0 26 chr5 74709046 74709084 -77828175 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 3 1154 414 276 9 9 chr5 74709086 74709192 -77828067 - PB1D10 SINE Alu -9 108 3 3 1155 770 300 9 13 chr5 74711054 74711284 -77825975 + L1M5 LINE L1 5476 5704 -420 3 1155 262 298 31 41 chr5 74713300 74713398 -77823861 + MLT1J2 LTR MaLR 7 103 -345 3 1155 229 277 0 0 chr5 74713719 74713766 -77823493 - Lx9 LINE L1 -1240 6404 6358 3 1155 3633 234 110 57 chr5 74713896 74714128 -77823131 + Lx9 LINE L1 6415 6651 -993 3 1155 4788 56 2 12 chr5 74714128 74714723 -77822536 + L1_Mus1 LINE L1 5979 6567 0 3 1155 3633 234 110 57 chr5 74714723 74715642 -77821617 + Lx9 LINE L1 6652 7627 -17 3 1155 22 56 0 0 chr5 74715642 74715678 -77821581 + AT_rich Low_complexity Low_complexity 1 36 0 3 1155 845 284 9 0 chr5 74715689 74715900 -77821359 + B3 SINE B2 3 215 -1 3 1155 1149 160 32 36 chr5 74716100 74716321 -77820938 + URR1B DNA MER1_type 4 223 -2 3 1155 288 378 68 61 chr5 74717694 74717987 -77819272 + ORR1E LTR MaLR 15 309 -50 3 1155 824 145 16 0 chr5 74718004 74718128 -77819131 + B1_Mur4 SINE Alu 12 137 -13 3 1155 354 132 0 0 chr5 74718128 74718204 -77819055 + (T)n Simple_repeat Simple_repeat 1 76 0 3 1155 1148 88 0 0 chr5 74718206 74718354 -77818905 - B1_Mus1 SINE Alu 0 148 1 3 1155 1495 58 0 10 chr5 74718371 74718563 -77818696 - B2_Mm2 SINE B2 -3 192 3 3 1155 471 35 0 0 chr5 74718632 74718689 -77818570 + (CAAG)n Simple_repeat Simple_repeat 2 58 0 3 1155 331 258 0 0 chr5 74719547 74719613 -77817646 - ID4_ SINE ID -16 67 2 3 1155 24 32 0 0 chr5 74719815 74719846 -77817413 + AT_rich Low_complexity Low_complexity 1 31 0 3 1155 681 279 21 16 chr5 74720099 74720285 -77816974 - B4A SINE B4 -4 288 102 3 1155 210 71 0 0 chr5 74720301 74720329 -77816930 + (CATA)n Simple_repeat Simple_repeat 4 31 0 3 1155 536 264 0 11 chr5 74720968 74721098 -77816161 - PB1D9 SINE Alu -15 135 8 3 1155 236 259 11 100 chr5 74721018 74721108 -77816151 - MT2B2 LTR ERVL -342 242 161 3 1155 24 0 0 0 chr5 74721233 74721257 -77816002 + AT_rich Low_complexity Low_complexity 1 24 0 3 1155 28 29 0 0 chr5 74721361 74721396 -77815863 + AT_rich Low_complexity Low_complexity 1 35 0 3 1155 434 319 7 21 chr5 74721767 74721995 -77815264 - L1MA5 LINE L1 -369 5931 5705 3 1155 705 259 5 89 chr5 74721996 74722199 -77815060 + MTEa LTR MaLR 141 326 -53 3 1155 205 211 0 0 chr5 74722200 74722238 -77815021 + A-rich Low_complexity Low_complexity 1 38 0 3 1155 196 322 17 0 chr5 74723967 74724026 -77813233 + L2a LINE L2 3367 3426 0 3 1155 261 0 0 0 chr5 74725095 74725124 -77812135 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1155 960 82 80 15 chr5 74725273 74725398 -77811861 + B1_Mus2 SINE Alu 2 137 -10 3 1155 203 0 0 36 chr5 74725398 74725426 -77811833 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 1155 960 82 80 15 chr5 74725426 74725437 -77811822 + B1_Mus2 SINE Alu 138 147 0 3 1155 615 186 42 0 chr5 74725438 74725556 -77811703 - B1_Mur2 SINE Alu -16 133 11 3 1155 222 261 0 0 chr5 74725852 74725898 -77811361 + polypurine Low_complexity Low_complexity 4 49 0 3 1155 225 196 22 0 chr5 74726328 74726374 -77810885 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1155 834 305 103 34 chr5 74726858 74728071 -77809188 + L1ME1 LINE L1 4860 6152 -27 3 1155 762 261 61 123 chr5 74728267 74728577 -77808682 + B4 SINE B4 2 292 0 3 1155 270 0 0 0 chr5 74730413 74730443 -77806816 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1155 370 240 90 40 chr5 74734288 74734388 -77802871 - RSINE1 SINE B4 -36 129 25 3 1155 456 315 39 19 chr5 74734583 74734746 -77802513 + MIR3 SINE MIR 25 188 -80 3 1155 246 206 0 0 chr5 74734939 74735012 -77802247 + (CCA)n Simple_repeat Simple_repeat 2 74 0 3 1155 327 361 65 35 chr5 74735040 74735379 -77801880 - L2 LINE L2 -355 3064 2716 3 1155 497 285 44 6 chr5 74735694 74735853 -77801406 + Lx7 LINE L1 5881 6045 -1651 4 1155 1989 30 70 0 chr5 74735941 74736171 -77801088 - L1Md_A LINE L1 0 6582 6337 4 1155 4632 26 0 0 chr5 74736171 74736703 -77800556 + L1_Mm LINE L1 4507 5038 -845 4 1155 192 77 0 0 chr5 74736784 74736810 -77800449 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 4 1155 236 329 26 0 chr5 74737013 74737089 -77800170 - BC1_Mm scRNA scRNA -73 79 2 4 1155 527 81 0 26 chr5 74737743 74737819 -77799440 - ORR1A4 LTR MaLR -1 328 255 4 1155 643 217 176 37 chr5 74738008 74738195 -77799064 + B3 SINE B2 4 216 0 4 1155 186 314 34 23 chr5 74738407 74738495 -77798764 - MIRb SINE MIR -66 202 114 4 1155 197 234 16 0 chr5 74738981 74739045 -77798214 + GA-rich Low_complexity Low_complexity 3 67 0 4 1155 1677 37 16 0 chr5 74740613 74740801 -77796458 - B2_Mm1t SINE B2 -2 191 1 4 1155 268 365 0 60 chr5 74741192 74741326 -77795933 + MTEa LTR MaLR 6 131 -248 4 1155 1089 215 66 105 chr5 74741210 74741592 -77795667 + MT2A LTR ERVL 19 517 -84 4 1155 273 29 0 0 chr5 74741596 74741630 -77795629 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1155 521 239 9 27 chr5 74741985 74742097 -77795162 - PB1D7 SINE Alu -1 119 10 4 1155 287 246 263 23 chr5 74742097 74742108 -77795151 - B4A SINE B4 -46 178 82 4 1155 1206 203 208 7 chr5 74742250 74742558 -77794701 - ORR1D2 LTR MaLR 0 370 1 4 1155 3339 48 20 2 chr5 74743407 74743800 -77793459 + MTB LTR MaLR 1 400 0 4 1155 203 311 136 0 chr5 74744304 74744407 -77792852 - MIR SINE MIR -140 122 6 4 1155 413 324 99 0 chr5 74745163 74745305 -77791954 + MTEa LTR MaLR 1 156 -223 4 1155 240 309 17 52 chr5 74745296 74745412 -77791847 - B3 SINE B2 -102 114 3 4 1155 254 302 0 0 chr5 74745412 74745456 -77791803 + MTEa LTR MaLR 332 375 -4 4 1155 23 0 0 0 chr5 74747542 74747565 -77789694 + AT_rich Low_complexity Low_complexity 1 23 0 4 1155 270 286 129 34 chr5 74748549 74748791 -77788468 + L2a LINE L2 3033 3343 -83 4 1155 301 328 73 67 chr5 74749773 74750100 -77787159 - L1ME4a LINE L1 -47 6077 5749 4 1155 597 64 0 0 chr5 74751253 74751331 -77785928 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 1155 234 371 48 16 chr5 74752256 74752382 -77784877 + MLT1J LTR MaLR 100 229 -283 4 1155 230 86 0 0 chr5 74752409 74752444 -77784815 - Lx8 LINE L1 -17 7456 7422 4 1155 261 0 0 0 chr5 74753096 74753125 -77784134 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1155 1278 61 0 0 chr5 74753125 74753273 -77783986 - B1_Mus1 SINE Alu 0 148 1 4 1155 342 278 4 0 chr5 74753690 74753777 -77783482 + PB1D10 SINE Alu 17 106 -14 4 1155 452 152 133 0 chr5 74753933 74754038 -77783221 - L1_Mm LINE L1 -3756 2127 2009 4 1155 403 319 47 35 chr5 74754783 74754952 -77782307 + MLT1J LTR MaLR 339 509 -3 4 1155 388 179 22 56 chr5 74755298 74755387 -77781872 + MTE2b LTR MaLR 294 379 0 4 1155 2797 53 26 15 chr5 74755602 74755944 -77781315 + ORR1A1 LTR MaLR 1 346 0 4 1155 23 0 0 0 chr5 74756533 74756556 -77780703 + AT_rich Low_complexity Low_complexity 1 23 0 4 1155 745 178 74 0 chr5 74756698 74756833 -77780426 + B1_Mur4 SINE Alu 6 150 0 4 1155 312 241 0 0 chr5 74758039 74758118 -77779141 + CT-rich Low_complexity Low_complexity 1 79 0 4 1155 411 244 0 0 chr5 74758360 74758475 -77778784 + (TA)n Simple_repeat Simple_repeat 1 115 0 4 1155 182 314 68 23 chr5 74759603 74759691 -77777568 - MIRb SINE MIR -139 129 38 4 1155 280 264 147 21 chr5 74759799 74759942 -77777317 - RSINE1 SINE B4 -2 163 3 4 1155 427 358 33 29 chr5 74760238 74760448 -77776811 - MIR SINE MIR -24 238 28 4 1155 559 261 90 43 chr5 74760663 74760851 -77776408 - MLT2B1 LTR ERVL -323 197 1 4 1155 654 49 0 0 chr5 74762067 74762149 -77775110 + (TC)n Simple_repeat Simple_repeat 1 82 0 4 1155 565 272 124 79 chr5 74763243 74763670 -77773589 - L1MB7 LINE L1 -16 6168 5709 4 1155 711 275 35 29 chr5 74764085 74764381 -77772878 + MLT2B1 LTR ERVL 170 567 0 4 1155 925 273 106 12 chr5 74764389 74764719 -77772540 + MLT1A0-int LTR MaLR 10 370 -1365 4 1155 1566 279 123 19 chr5 74764744 74765307 -77771952 + Tigger1 DNA MER2_type 1 621 -1797 4 1155 315 0 0 0 chr5 74765636 74765671 -77771588 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1155 230 0 0 32 chr5 74765937 74765968 -77771291 + (CCCCCA)n Simple_repeat Simple_repeat 2 31 0 4 1155 645 199 0 58 chr5 74766128 74766267 -77770992 + Tigger1 DNA MER2_type 623 753 -1665 4 1155 2134 232 161 26 chr5 74766909 74767573 -77769686 + Tigger1 DNA MER2_type 1003 1756 -662 4 1155 307 312 132 6 chr5 74767594 74767702 -77769557 + Tigger1 DNA MER2_type 2216 2327 -91 4 1155 288 0 0 0 chr5 74767702 74767734 -77769525 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1155 307 312 132 6 chr5 74767734 74767799 -77769460 + Tigger1 DNA MER2_type 2328 2410 -8 4 1155 227 352 41 47 chr5 74767803 74767973 -77769286 + MLT1-int LTR MaLR 431 599 -772 4 1155 1193 311 34 27 chr5 74768273 74768680 -77768579 + MLT1A0-int LTR MaLR 1313 1722 -13 4 1155 252 267 53 0 chr5 74768814 74768889 -77768370 + MLT1A0 LTR MaLR 16 94 -280 4 1155 489 279 54 65 chr5 74768933 74769117 -77768142 + MLT1A0 LTR MaLR 178 359 -6 4 1155 317 295 102 6 chr5 74769124 74769291 -77767968 - L1M4 LINE L1 -798 5348 5166 4 1155 1572 152 31 21 chr5 74769697 74769970 -77767289 + ORR1B1 LTR MaLR 2 277 -117 4 1155 531 268 41 121 chr5 74769970 74770450 -77766809 + RLTR11A2 LTR ERVK 1 565 -3 4 1155 453 164 2 163 chr5 74770450 74770560 -77766699 + ORR1B1 LTR MaLR 228 386 -8 4 1155 1241 211 0 23 chr5 74770564 74770778 -77766481 + B3 SINE B2 3 211 -5 4 1155 261 83 0 0 chr5 74771183 74771219 -77766040 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1155 253 302 69 50 chr5 74771669 74771770 -77765489 - MIRm SINE MIR -16 260 158 4 1155 1402 81 11 0 chr5 74772976 74773150 -77764109 + B2_Mm2 SINE B2 1 176 -19 4 1155 213 39 0 0 chr5 74773388 74773414 -77763845 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 1155 864 293 42 4 chr5 74773458 74773722 -77763537 + L1MD LINE L1 5548 5821 -538 4 1155 453 316 69 9 chr5 74773822 74774068 -77763191 - MLT2B3 LTR ERVL -342 375 117 4 1155 447 231 0 71 chr5 74774307 74774419 -77762840 + B1_Mur3 SINE Alu 46 149 0 4 1155 338 81 32 0 chr5 74774419 74774481 -77762778 + (TAAAA)n Simple_repeat Simple_repeat 1 64 0 4 1155 319 308 25 119 chr5 74774600 74774843 -77762416 + ORR1E LTR MaLR 43 262 -97 4 1155 471 35 0 0 chr5 74775391 74775448 -77761811 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1155 388 310 81 37 chr5 74775454 74775615 -77761644 - B4A SINE B4 -8 284 117 4 1155 597 28 0 0 chr5 74777205 74777276 -77759983 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 1155 481 286 17 0 chr5 74777283 74777402 -77759857 - RSINE1 SINE B4 -40 125 5 4 1155 325 333 24 53 chr5 74777809 74778015 -77759244 + L1MC LINE L1 5378 5577 -2305 4 1155 1486 179 171 5 chr5 74778044 74778469 -77758790 + Lx9 LINE L1 7147 7641 -3 4 1155 528 262 57 143 chr5 74778647 74779101 -77758158 + RMER10A LTR ERVL 15 429 -13 4 1155 475 258 41 32 chr5 74779567 74779756 -77757503 + MTD LTR MaLR 10 203 -204 4 1155 322 175 0 200 chr5 74779757 74779857 -77757402 + MTD LTR MaLR 338 417 -2 4 1155 1398 237 42 55 chr5 74779876 74780331 -77756928 + RLTR17 LTR ERVK 105 553 -139 4 1155 480 156 61 69 chr5 74782781 74782912 -77754347 - ORR1B1 LTR MaLR -186 208 79 4 1155 230 284 27 0 chr5 74783915 74783989 -77753270 + BC1_Mm scRNA scRNA 1 76 -76 4 1155 26 0 0 0 chr5 74784546 74784572 -77752687 + AT_rich Low_complexity Low_complexity 1 26 0 4 1155 183 129 0 0 chr5 74785405 74785436 -77751823 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 4 1155 368 40 20 0 chr5 74785445 74785495 -77751764 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 4 1155 478 224 31 0 chr5 74785549 74785647 -77751612 + B1F1 SINE Alu 2 102 -47 4 1155 192 217 0 0 chr5 74786289 74786335 -77750924 + CT-rich Low_complexity Low_complexity 2 47 0 4 1155 508 254 64 14 chr5 74786336 74786476 -77750783 - B1F1 SINE Alu 0 149 3 4 1155 1049 128 22 0 chr5 74786550 74786729 -77750530 + URR1A DNA MER1_type 44 226 0 4 1155 773 226 192 37 chr5 74788566 74788888 -77748371 - ORR1D1 LTR MaLR -2 372 1 4 1155 187 299 153 10 chr5 74789358 74789456 -77747803 - MIRc SINE MIR -132 136 25 4 1155 243 0 0 0 chr5 74791671 74791698 -77745561 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1155 201 268 0 0 chr5 74792053 74792094 -77745165 + polypurine Low_complexity Low_complexity 1 41 0 4 1155 216 122 0 0 chr5 74793066 74793107 -77744152 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1155 22 0 0 0 chr5 74794190 74794212 -77743047 + AT_rich Low_complexity Low_complexity 1 22 0 4 1155 287 256 26 0 chr5 74794227 74794305 -77742954 + ID4 SINE ID 3 82 -1 4 1155 851 196 136 0 chr5 74794722 74794906 -77742353 - B3 SINE B2 -6 210 2 4 1155 234 231 213 0 chr5 74795163 74795271 -77741988 - L2b LINE L2 -4 3371 3241 4 1155 445 280 71 44 chr5 74796267 74796346 -77740913 + L1MC3 LINE L1 6663 6747 -1038 4 1155 252 0 0 0 chr5 74796346 74796374 -77740885 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1155 445 280 71 44 chr5 74796374 74796477 -77740782 + L1MC3 LINE L1 6748 6850 -935 4 1155 473 227 23 23 chr5 74796499 74796675 -77740584 + G-rich Low_complexity Low_complexity 3 178 0 4 1155 933 133 0 0 chr5 74796677 74796835 -77740424 + (GGAGA)n Simple_repeat Simple_repeat 1 158 0 4 1155 315 241 116 34 chr5 74796862 74797008 -77740251 + L1MC3 LINE L1 6875 7032 -753 4 1155 311 130 19 0 chr5 74797011 74797065 -77740194 + B4 SINE B4 2 56 -236 4 1155 632 230 8 6 chr5 74797039 74797197 -77740062 - B3A SINE B2 -56 160 7 4 1155 267 103 0 0 chr5 74797300 74797339 -77739920 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1155 190 359 64 0 chr5 74797367 74797445 -77739814 + MIRc SINE MIR 69 151 -117 4 1155 297 256 26 0 chr5 74797551 74797629 -77739630 - Kanga2_a DNA Tc2 -778 110 31 4 1155 22 56 0 0 chr5 74798563 74798599 -77738660 + AT_rich Low_complexity Low_complexity 1 36 0 4 1155 1255 296 43 45 chr5 74799345 74799858 -77737401 - MTE-int LTR MaLR -926 654 143 5 1155 723 238 0 7 chr5 74799881 74800029 -77737230 + B3A SINE B2 2 148 -50 5 1155 480 18 0 0 chr5 74800029 74800086 -77737173 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1155 283 262 43 71 chr5 74800112 74800252 -77737007 - MTE-int LTR MaLR -1444 136 1 5 1155 246 358 0 21 chr5 74800276 74800373 -77736886 - MTEb LTR MaLR -36 343 249 5 1155 912 173 160 16 chr5 74800523 74800717 -77736542 - URR1A DNA MER1_type 0 226 5 5 1155 2236 41 0 4 chr5 74800757 74801027 -77736232 + L1Md_T LINE L1 6313 6581 -1 5 1155 370 334 91 18 chr5 74801092 74801367 -77735892 + MLT1D LTR MaLR 101 397 -108 5 1155 198 0 0 0 chr5 74801576 74801598 -77735661 + (CCCTAA)n Simple_repeat Simple_repeat 4 25 0 5 1155 1015 199 111 12 chr5 74801647 74801956 -77735303 + ORR1C2 LTR MaLR 12 374 -10 5 1155 898 281 150 109 chr5 74802219 74802429 -77734830 + Charlie1a DNA MER1_type 338 562 -893 5 1155 422 284 35 28 chr5 74802429 74802574 -77734685 + B1F SINE Alu 1 146 -3 5 1155 898 281 150 109 chr5 74802574 74803271 -77733988 + Charlie1a DNA MER1_type 563 1284 -171 5 1155 249 33 0 0 chr5 74803271 74803301 -77733958 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5 1155 708 218 0 21 chr5 74803301 74803446 -77733813 - B1_Mur2 SINE Alu -7 142 1 5 1155 898 281 150 109 chr5 74803446 74803515 -77733744 + Charlie1a DNA MER1_type 1285 1355 -100 5 1155 234 62 0 0 chr5 74804427 74804459 -77732800 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 5 1155 504 165 0 0 chr5 74804872 74804963 -77732296 + (TA)n Simple_repeat Simple_repeat 1 91 0 5 1155 547 118 10 73 chr5 74805012 74805204 -77732055 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1155 841 239 68 38 chr5 74805347 74805582 -77731677 - B4A SINE B4 -12 280 39 5 1155 587 312 0 0 chr5 74806076 74806214 -77731045 + RSINE1 SINE B4 7 144 -21 5 1155 611 207 0 7 chr5 74806214 74806360 -77730899 + CT-rich Low_complexity Low_complexity 2 146 0 5 1155 208 77 0 49 chr5 74806382 74806423 -77730836 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 5 1155 341 324 154 15 chr5 74806662 74806928 -77730331 - L2 LINE L2 -445 2974 2672 5 1155 556 201 107 43 chr5 74807343 74807483 -77729776 + B1_Mur2 SINE Alu 1 149 0 5 1155 488 248 91 58 chr5 74807604 74807851 -77729408 + L1ME3A LINE L1 5880 6177 -2 5 1155 848 210 108 0 chr5 74808708 74808894 -77728365 - B3 SINE B2 -5 211 6 5 1155 674 239 191 4 chr5 74810592 74810859 -77726400 - L1M2 LINE L1 -3113 3030 2717 5 1155 21 57 0 0 chr5 74811048 74811083 -77726176 + AT_rich Low_complexity Low_complexity 1 35 0 5 1155 304 340 122 82 chr5 74811240 74811519 -77725740 + B4 SINE B4 3 292 0 5 1155 537 306 22 16 chr5 74813021 74813204 -77724055 + B3A SINE B2 1 184 -14 5 1155 269 259 0 0 chr5 74813828 74813886 -77723373 - AluG_3 SINE Alu -96 215 158 5 1155 396 295 91 46 chr5 74814690 74814953 -77722306 + ORR1E LTR MaLR 6 280 -79 5 1155 320 290 0 21 chr5 74815161 74815256 -77722003 + MLT1J1 LTR MaLR 63 155 -289 5 1155 485 135 11 0 chr5 74816586 74816675 -77720584 + (CA)n Simple_repeat Simple_repeat 1 90 0 5 1155 597 28 0 0 chr5 74819459 74819530 -77717729 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 5 1155 524 283 38 198 chr5 74819718 74819951 -77717308 - MLT1A LTR MaLR 0 374 192 5 1155 229 70 70 0 chr5 74819951 74819994 -77717265 + (CATA)n Simple_repeat Simple_repeat 2 47 0 5 1155 524 283 38 198 chr5 74819994 74820205 -77717054 - MLT1A LTR MaLR -183 191 1 5 1155 1216 287 152 68 chr5 74821452 74821753 -77715506 + Lx8 LINE L1 4999 5286 -594 5 1155 1010 151 11 17 chr5 74821753 74821928 -77715331 + B2_Mm2 SINE B2 4 177 -18 5 1155 1216 282 141 39 chr5 74821928 74822530 -77714729 + Lx8 LINE L1 5287 5974 -1499 5 1155 342 252 69 3 chr5 74822797 74822927 -77714332 + B3 SINE B2 38 183 -10 5 1155 643 284 10 26 chr5 74822951 74823146 -77714113 + Lx8 LINE L1 6189 6380 -1093 5 1155 1046 204 9 5 chr5 74823147 74823364 -77713895 + ORR1B2 LTR MaLR 1 218 -149 5 1155 1613 166 80 3 chr5 74823354 74823656 -77713603 - MTC LTR MaLR -96 325 1 5 1155 6365 161 66 10 chr5 74823656 74824846 -77712413 - MTC-int LTR MaLR 0 1258 2 5 1155 226 158 0 0 chr5 74824846 74824884 -77712375 - MTC LTR MaLR -1 418 381 5 1155 390 129 0 0 chr5 74825479 74825541 -77711718 + (T)n Simple_repeat Simple_repeat 1 62 0 5 1155 186 262 122 38 chr5 74827658 74827789 -77709470 + MIRb SINE MIR 11 152 -116 5 1155 242 178 0 0 chr5 74827870 74827915 -77709344 + Lx8 LINE L1 7422 7466 -7 5 1155 36 0 0 0 chr5 74827926 74827962 -77709297 + AT_rich Low_complexity Low_complexity 1 36 0 5 1155 904 232 5 16 chr5 74830807 74830991 -77706268 + B3A SINE B2 1 182 -16 5 1155 333 0 0 0 chr5 74831392 74831429 -77705830 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1155 303 279 0 12 chr5 74832082 74832162 -77705097 + MER21B LTR ERV1 1 79 -784 5 1155 905 236 9 37 chr5 74832177 74832393 -77704866 + B3 SINE B2 1 210 -6 5 1155 259 271 46 23 chr5 74832815 74832902 -77704357 + MER21B LTR ERV1 607 695 -168 5 1155 517 304 139 34 chr5 74833045 74833369 -77703890 - MLT1A LTR MaLR -16 358 1 5 1155 290 298 158 30 chr5 74834607 74834936 -77702323 + HAL1 LINE L1 650 1020 -1487 5 1155 422 336 13 26 chr5 74834969 74835122 -77702137 - RSINE1 SINE B4 -8 157 7 5 1155 643 168 51 0 chr5 74835143 74835280 -77701979 - Lx9 LINE L1 -2 7642 7499 5 1155 5378 202 31 6 chr5 74835317 74836389 -77700870 - Lx9 LINE L1 -232 7412 6314 5 1155 774 308 4 26 chr5 74836512 74836739 -77700520 + B4A SINE B4 71 292 0 5 1155 213 146 24 24 chr5 74836739 74836781 -77700478 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1155 257 343 111 17 chr5 74837299 74837480 -77699779 + HAL1 LINE L1 1589 1786 -721 5 1155 423 280 0 0 chr5 74837922 74838029 -77699230 + B3A SINE B2 1 107 -91 5 1155 1194 55 0 0 chr5 74838252 74838398 -77698861 + B1_Mus2 SINE Alu 2 147 0 5 1155 270 324 19 0 chr5 74838607 74838712 -77698547 + Tigger6b DNA MER2_type 1185 1291 -306 5 1155 467 284 87 31 chr5 74838809 74839005 -77698254 - RMER15 LTR ERVL -13 562 356 5 1155 310 296 71 43 chr5 74839141 74839282 -77697977 - Lx8 LINE L1 -295 7178 7034 5 1155 437 252 13 33 chr5 74839305 74839457 -77697802 + Tigger6b DNA MER2_type 1417 1565 -32 5 1155 201 74 0 0 chr5 74839596 74839623 -77697636 + (TTA)n Simple_repeat Simple_repeat 1 27 0 5 1155 262 324 90 14 chr5 74839667 74839811 -77697448 - RSINE1 SINE B4 -5 160 6 5 1155 1106 188 19 10 chr5 74839868 74840077 -77697182 - B3 SINE B2 -4 212 2 5 1155 343 333 62 19 chr5 74840367 74840529 -77696730 + MER2B DNA MER2_type 1 169 -167 5 1155 469 225 96 32 chr5 74840607 74840763 -77696496 + MER2 DNA MER2_type 83 248 -97 5 1155 338 250 0 0 chr5 74840795 74840867 -77696392 + MER2B DNA MER2_type 202 273 -63 5 1155 235 314 98 90 chr5 74841329 74841363 -77695896 + Tigger13a DNA MER2_type 492 526 -245 5 1155 198 0 0 0 chr5 74841363 74841385 -77695874 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1155 824 166 7 0 chr5 74841385 74841524 -77695735 - B1_Mur4 SINE Alu -10 140 1 5 1155 235 314 98 90 chr5 74841524 74841754 -77695505 + Tigger13a DNA MER2_type 527 758 -13 5 144 1455 254 42 31 chr5 74842020 74842475 -77694784 + Charlie1b DNA MER1_type 35 494 -29 5 1156 480 215 40 32 chr5 74843490 74843615 -77693644 + B1_Mur1 SINE Alu 17 142 -7 5 1156 848 270 10 20 chr5 74843627 74843831 -77693428 + B3 SINE B2 1 202 -14 5 1156 222 118 0 0 chr5 74844463 74844497 -77692762 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1156 283 333 79 30 chr5 74844943 74845107 -77692152 + ORR1E LTR MaLR 19 190 -169 5 1156 271 209 26 17 chr5 74845116 74845233 -77692026 + CT-rich Low_complexity Low_complexity 5 122 0 5 1156 267 137 12 141 chr5 74845332 74845417 -77691842 + ORR1E LTR MaLR 287 360 -19 5 1156 180 184 0 0 chr5 74845484 74845533 -77691726 + (TA)n Simple_repeat Simple_repeat 1 49 0 5 1156 367 302 40 101 chr5 74845536 74845783 -77691476 - RMER13A LTR ERVK -628 232 1 5 1156 441 255 117 67 chr5 74845955 74846178 -77691081 + B4A SINE B4 31 264 -28 5 1156 333 0 0 0 chr5 74846210 74846247 -77691012 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1156 294 236 236 24 chr5 74846276 74846441 -77690818 - B4A SINE B4 -92 200 1 5 1156 2202 213 35 20 chr5 74848375 74848882 -77688377 + RMER1B Other Other 32 591 -475 5 1156 1999 160 18 33 chr5 74848882 74849397 -77687862 + RLTR20A LTR ERVK 85 551 0 5 1156 869 264 30 7 chr5 74849998 74850269 -77686990 + B4A SINE B4 14 290 -2 5 1156 895 245 14 19 chr5 74851607 74851823 -77685436 - B3 SINE B2 0 216 2 5 1156 696 232 139 11 chr5 74853393 74853580 -77683679 + B3 SINE B2 6 216 0 5 1156 180 125 0 0 chr5 74855123 74855155 -77682104 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1156 186 43 0 0 chr5 74855456 74855479 -77681780 + (CCTG)n Simple_repeat Simple_repeat 3 25 0 5 1156 253 213 81 128 chr5 74855709 74855795 -77681464 - PB1D9 SINE Alu -2 118 37 5 1156 183 304 0 0 chr5 74855934 74856013 -77681246 + (CATA)n Simple_repeat Simple_repeat 4 82 0 5 1156 773 168 23 0 chr5 74856093 74856224 -77681035 + B1_Mur4 SINE Alu 1 134 -16 5 1156 1388 75 37 5 chr5 74856296 74856484 -77680775 - B2_Mm2 SINE B2 0 195 2 5 1156 690 185 0 0 chr5 74856518 74856653 -77680606 + (TA)n Simple_repeat Simple_repeat 1 135 0 5 1156 21 0 0 0 chr5 74856655 74856676 -77680583 + AT_rich Low_complexity Low_complexity 1 21 0 5 1156 1128 61 0 33 chr5 74856677 74856829 -77680430 - B1_Mus1 SINE Alu -1 147 1 5 1156 294 29 0 0 chr5 74857269 74857304 -77679955 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1156 923 221 224 0 chr5 74858172 74858471 -77678788 - ORR1D2 LTR MaLR 0 370 5 5 1156 1124 80 0 0 chr5 74859136 74859273 -77677986 + B1_Mus1 SINE Alu 1 137 -11 5 1156 225 0 0 0 chr5 74859273 74859298 -77677961 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 5 1156 810 63 24 0 chr5 74860128 74860254 -77677005 + (TCTA)n Simple_repeat Simple_repeat 4 132 0 5 1156 310 286 0 12 chr5 74860436 74860521 -77676738 - L1ME1 LINE L1 -11 6168 6085 5 1156 1680 258 81 55 chr5 74860997 74861772 -77675487 - L1ME1 LINE L1 -100 6079 5285 5 1156 189 74 0 0 chr5 74862972 74862999 -77674260 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1156 915 88 88 0 chr5 74863061 74863197 -77674062 + B1_Mus1 SINE Alu 1 148 0 5 1156 630 71 0 0 chr5 74863446 74863530 -77673729 + (GA)n Simple_repeat Simple_repeat 2 85 0 5 1156 239 175 0 0 chr5 74864155 74864212 -77673047 + Tigger9a DNA Tigger 543 599 -133 6 1156 261 180 0 0 chr5 74864226 74864276 -77672983 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 6 1156 1480 39 0 0 chr5 74864932 74865136 -77672123 + L1Md_F2 LINE L1 6383 6582 0 6 1156 310 329 27 27 chr5 74865604 74865751 -77671508 + L3b LINE CR1 181 327 -155 6 1156 345 207 0 0 chr5 74866658 74866740 -77670519 + G-rich Low_complexity Low_complexity 2 83 0 6 1156 254 246 174 0 chr5 74866762 74866831 -77670428 + B3A SINE B2 2 82 -116 6 1156 347 314 21 103 chr5 74866957 74867191 -77670068 + L1M2 LINE L1 351 565 -6603 6 1156 559 286 35 15 chr5 74867644 74867692 -77669567 - B3 SINE B2 -3 213 166 6 1156 243 61 0 0 chr5 74867692 74867725 -77669534 + (TATG)n Simple_repeat Simple_repeat 2 34 0 6 1156 559 286 35 15 chr5 74867725 74867878 -77669381 - B3 SINE B2 -51 165 8 6 1156 291 85 0 0 chr5 74868098 74868145 -77669114 + (T)n Simple_repeat Simple_repeat 1 47 0 6 1156 1229 54 0 0 chr5 74868145 74868292 -77668967 - B1_Mm SINE Alu 0 147 1 6 1156 233 256 76 13 chr5 74868898 74868977 -77668282 + RSINE1 SINE B4 82 165 0 6 1156 821 267 40 7 chr5 74869017 74869289 -77667970 + L1MA4 LINE L1 5602 5882 -418 6 1156 221 291 0 0 chr5 74869318 74869373 -77667886 + (CGTG)n Simple_repeat Simple_repeat 3 57 0 6 1156 433 198 50 0 chr5 74869489 74869590 -77667669 + L1M2 LINE L1 2790 2895 -4273 6 1156 452 204 0 70 chr5 74869608 74869708 -77667551 - B1F SINE Alu -1 148 56 6 1156 279 312 9 94 chr5 74869618 74869724 -77667535 - ID_B1 SINE B4 -11 213 117 6 1156 276 298 30 69 chr5 74869735 74869836 -77667423 - PB1D10 SINE Alu -15 102 6 6 1156 607 231 8 0 chr5 74869772 74869889 -77667370 - ID_B1 SINE B4 -73 151 34 6 1156 260 261 130 0 chr5 74869839 74869908 -77667351 - ID4_ SINE ID -1 82 5 6 1156 296 314 0 0 chr5 74869922 74870008 -77667251 + L1M2 LINE L1 2912 2997 -4171 6 1156 292 290 55 7 chr5 74870229 74870375 -77666884 + L1M2 LINE L1 2911 3063 -4106 6 1156 366 286 30 8 chr5 74870493 74870627 -77666632 + L1M2 LINE L1 3267 3403 -3758 6 1156 827 199 86 5 chr5 74870662 74870849 -77666410 + B3 SINE B2 8 209 -7 6 1156 254 256 36 24 chr5 74870889 74870973 -77666286 + L1M2 LINE L1 3496 3580 -3584 6 1156 677 284 28 72 chr5 74870948 74871267 -77665992 + L1M4 LINE L1 2601 2905 -3241 6 1156 298 214 17 0 chr5 74871281 74871349 -77665910 + B3A SINE B2 14 88 -107 6 1156 1415 169 8 0 chr5 74871352 74871595 -77665664 - Lx4B LINE L1 -246 6812 6568 6 1156 237 285 188 7 chr5 74871809 74871947 -77665312 + Charlie1a DNA MER1_type 7 169 -1286 6 1156 707 71 0 0 chr5 74872187 74872286 -77664973 - B1_Mm SINE Alu 0 147 49 6 1156 220 286 14 0 chr5 74872344 74872414 -77664845 + B4A SINE B4 2 72 -220 6 1156 215 297 0 26 chr5 74872350 74872426 -77664833 + BC1_Mm scRNA scRNA 9 82 -70 6 1156 1175 194 14 0 chr5 74873795 74874017 -77663242 + URR1A DNA MER1_type 2 226 0 6 1156 390 169 153 0 chr5 74874236 74874360 -77662899 - LTR50 LTR ERVL -585 210 68 6 1156 242 305 57 44 chr5 74874404 74874562 -77662697 + MIR SINE MIR 103 262 0 6 1156 227 103 26 0 chr5 74874773 74874812 -77662447 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 6 1156 277 186 129 0 chr5 74876645 74876715 -77660544 + PB1D10 SINE Alu 1 79 -38 6 1156 209 337 12 0 chr5 74876921 74877007 -77660252 + (CATATA)n Simple_repeat Simple_repeat 3 89 0 6 1156 2541 75 89 0 chr5 74877045 74877416 -77659843 - Lx3B LINE L1 -602 6371 5968 6 1156 3923 97 14 19 chr5 74877416 74877993 -77659266 + Lx3B LINE L1 6395 6968 -5 6 1156 319 248 140 102 chr5 74881361 74881518 -77655741 - RSINE1 SINE B4 0 165 3 6 1156 957 260 10 10 chr5 74881549 74881751 -77655508 - B3 SINE B2 -10 206 5 6 1156 897 313 74 11 chr5 74881859 74882172 -77655087 - MTEa LTR MaLR 0 379 61 6 1156 396 0 0 0 chr5 74882172 74882216 -77655043 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1156 897 313 74 11 chr5 74882216 74882254 -77655005 - MTEa LTR MaLR -319 60 7 6 1156 2728 248 57 46 chr5 74882260 74883063 -77654196 - MTEa-int LTR MaLR -2 1578 767 6 1156 1264 291 25 36 chr5 74883083 74883528 -77653731 + Lx8 LINE L1 6432 6871 -602 6 1156 700 274 45 5 chr5 74883616 74883818 -77653441 - MTEa-int LTR MaLR -1173 407 198 6 1156 1380 94 0 0 chr5 74883839 74884030 -77653229 - L1_Mus3 LINE L1 -434 5449 5259 6 1156 7324 81 36 13 chr5 74884029 74885180 -77652079 + L1_Mus3 LINE L1 5462 6638 0 6 1156 221 298 37 28 chr5 74885243 74885350 -77651909 - L3b LINE CR1 -212 270 163 6 1156 584 211 0 0 chr5 74885394 74885498 -77651761 + B3 SINE B2 1 104 -112 6 1156 21 71 0 0 chr5 74886475 74886517 -77650742 + AT_rich Low_complexity Low_complexity 1 42 0 6 1156 704 136 0 8 chr5 74887882 74888001 -77649258 - B2_Mm2 SINE B2 0 195 78 6 1156 264 231 0 60 chr5 74888029 74888112 -77649147 + B3 SINE B2 138 215 -1 6 1156 460 97 14 0 chr5 74888117 74888189 -77649070 - B2_Mm2 SINE B2 -121 74 2 6 1156 224 215 0 30 chr5 74888216 74888268 -77648991 + CT-rich Low_complexity Low_complexity 15 66 0 6 1156 1233 96 83 17 chr5 74888268 74888451 -77648808 - B2_Mm2 SINE B2 0 195 1 6 1156 245 221 0 14 chr5 74888451 74888465 -77648794 + polypyrimidine Low_complexity Low_complexity 2 15 0 6 1156 463 224 34 88 chr5 74889662 74889809 -77647450 - B1F SINE Alu -2 147 9 6 1156 7125 51 1 1 chr5 74889842 74890669 -77646590 + L1Md_F2 LINE L1 5755 6581 -1 6 1156 1186 82 7 0 chr5 74891053 74891199 -77646060 + B1_Mus2 SINE Alu 1 147 0 6 1156 216 111 0 0 chr5 74891199 74891235 -77646024 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1156 428 185 86 11 chr5 74891259 74891352 -77645907 + PB1D9 SINE Alu 20 119 -1 6 1156 1056 128 0 39 chr5 74891962 74892117 -77645142 + B1_Mur2 SINE Alu 1 149 0 6 1156 201 108 0 0 chr5 74892163 74892200 -77645059 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1156 523 227 0 13 chr5 74892353 74892509 -77644750 + (TA)n Simple_repeat Simple_repeat 2 155 0 6 1156 311 255 28 6 chr5 74892522 74892655 -77644604 + B3A SINE B2 2 176 -22 6 1156 231 243 129 0 chr5 74893652 74893722 -77643537 + ID4_ SINE ID 2 80 -3 6 1156 6395 63 14 4 chr5 74894006 74894782 -77642477 - L1_Mus1 LINE L1 -3 6564 5781 6 1156 8494 99 8 2 chr5 74894782 74895956 -77641303 - L1_Mus1 LINE L1 -206 5677 4497 6 1156 35507 61 5 1 chr5 74895958 74901152 -77636107 + L1Md_F2 LINE L1 418 5586 -297 6 1156 8838 34 0 18 chr5 74901152 74902165 -77635094 + L1Md_F2 LINE L1 5587 6581 -1 6 1156 22577 105 18 37 chr5 74902165 74906052 -77631207 - L1Md_F LINE L1 -1375 4508 725 6 1156 416 278 15 8 chr5 74906054 74906188 -77631071 - L1Md_F LINE L1 -5807 809 675 6 1156 343 293 13 98 chr5 74906246 74906494 -77630765 - L1VL1 LINE L1 -6030 392 45 6 1156 402 290 77 84 chr5 74906580 74906723 -77630536 - RSINE1 SINE B4 -1 164 23 6 1156 229 196 0 0 chr5 74906895 74906941 -77630318 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 6 1156 210 310 135 36 chr5 74907161 74907436 -77629823 - L2a LINE L2 -299 3127 2827 6 1156 1289 78 60 6 chr5 74908169 74908336 -77628923 + B2_Mm2 SINE B2 2 177 -18 6 1156 245 239 87 43 chr5 74908549 74908641 -77628618 - MIR3 SINE MIR -14 194 99 6 1156 250 244 64 15 chr5 74909257 74909345 -77627914 + MIR SINE MIR 136 232 -36 6 1156 181 273 23 0 chr5 74909841 74909885 -77627374 + L2b LINE L2 3149 3193 -182 6 1156 841 232 81 5 chr5 74910727 74910913 -77626346 + B3 SINE B2 1 200 -16 6 1156 378 0 0 0 chr5 74910914 74910956 -77626303 + (CATA)n Simple_repeat Simple_repeat 1 42 0 6 1156 1181 88 0 13 chr5 74910956 74911105 -77626154 + B1_Mus1 SINE Alu 2 148 0 6 1156 285 29 0 0 chr5 74911105 74911139 -77626120 + (CATA)n Simple_repeat Simple_repeat 2 35 0 6 1156 14779 71 21 15 chr5 74911677 74914583 -77622676 + L1VL2 LINE L1 64 2988 -627 6 1156 1186 35 28 7 chr5 74914779 74914923 -77622336 + B1_Mm SINE Alu 1 147 0 6 1156 27 96 0 0 chr5 74915233 74915316 -77621943 + AT_rich Low_complexity Low_complexity 1 83 0 6 1156 627 220 0 0 chr5 74915327 74915436 -77621823 - ID_B1 SINE B4 -13 211 103 6 1156 222 328 0 0 chr5 74916006 74916070 -77621189 - MIR SINE MIR -8 254 191 6 1156 879 237 74 20 chr5 74916092 74916294 -77620965 + ID_B1 SINE B4 2 214 -10 6 1156 189 74 0 0 chr5 74916557 74916584 -77620675 + (CAT)n Simple_repeat Simple_repeat 3 29 0 6 1156 962 209 129 54 chr5 74916775 74917236 -77620023 + MT2B LTR ERVL 1 600 -1 6 1156 252 277 174 35 chr5 74918022 74918108 -77619151 - PB1D10 SINE Alu -15 102 5 6 1156 220 172 35 0 chr5 74918268 74918326 -77618933 + CT-rich Low_complexity Low_complexity 2 61 0 6 1156 290 322 58 25 chr5 74918380 74918501 -77618758 + L2a LINE L2 3297 3421 -5 6 1156 316 269 65 65 chr5 74918572 74918594 -77618665 + MT2B2 LTR ERVL 144 262 -318 6 1156 411 247 52 0 chr5 74918594 74918691 -77618568 + ID_B1 SINE B4 85 186 -38 6 1156 1261 68 0 0 chr5 74918849 74918996 -77618263 + B1_Mus2 SINE Alu 1 147 0 6 1156 1459 58 12 0 chr5 74919116 74919288 -77617971 - B2_Mm2 SINE B2 -19 176 3 6 1156 379 234 46 9 chr5 74920114 74920222 -77617037 + RSINE1 SINE B4 3 114 -51 6 1156 656 289 56 17 chr5 74920446 74920678 -77616581 - RMER15 LTR ERVL -13 562 322 6 1156 1171 75 0 7 chr5 74921292 74921439 -77615820 + B1_Mus2 SINE Alu 2 147 0 6 1156 1443 77 22 0 chr5 74921701 74921883 -77615376 - B2_Mm1t SINE B2 -6 187 2 6 1156 594 226 35 49 chr5 74922297 74922441 -77614818 + B1_Mur1 SINE Alu 1 142 -7 6 1156 432 238 57 38 chr5 74922524 74922629 -77614630 + RSINE1 SINE B4 2 108 -57 6 1156 496 237 104 22 chr5 74922802 74922936 -77614323 + B1F2 SINE Alu 3 147 -2 6 1156 446 197 0 0 chr5 74922936 74923007 -77614252 + ID4 SINE ID 2 72 -11 6 1156 250 273 0 0 chr5 74923279 74923334 -77613925 + MTD LTR MaLR 41 95 -324 6 1156 1168 200 150 10 chr5 74923575 74923868 -77613391 + MTD LTR MaLR 86 419 0 6 1156 558 67 0 0 chr5 74924033 74924108 -77613151 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 1156 311 275 215 47 chr5 74924241 74924432 -77612827 - B4A SINE B4 -68 224 2 6 1156 4270 105 7 2 chr5 74924760 74925340 -77611919 + L1_Mus3 LINE L1 6052 6634 -4 6 1156 515 269 0 65 chr5 74926119 74926242 -77611017 - RSINE1 SINE B4 0 165 51 7 1156 1160 166 30 34 chr5 74926214 74926451 -77610808 + MTC LTR MaLR 186 421 0 7 1156 402 231 104 104 chr5 74928141 74928305 -77608954 + RSINE1 SINE B4 2 165 0 7 1156 222 116 0 0 chr5 74928313 74928356 -77608903 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 7 1156 234 0 0 0 chr5 74928469 74928495 -77608764 + (TTA)n Simple_repeat Simple_repeat 2 27 0 7 1156 440 252 99 139 chr5 74928495 74928548 -77608711 - L1MB3 LINE L1 -6 6177 6139 7 1156 330 80 0 0 chr5 74928548 74928598 -77608661 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1156 804 206 0 0 chr5 74928598 74928729 -77608530 - B1_Mur2 SINE Alu -14 135 5 7 1156 440 252 99 139 chr5 74928729 74929056 -77608203 - L1MB3 LINE L1 -45 6138 5812 7 1156 1152 62 7 52 chr5 74929234 74929387 -77607872 + B1_Mus2 SINE Alu 1 146 -1 7 1156 180 250 21 0 chr5 74929819 74929867 -77607392 + L2a LINE L2 3104 3152 -223 7 1156 24 0 0 0 chr5 74930455 74930479 -77606780 + AT_rich Low_complexity Low_complexity 1 24 0 7 1156 335 301 73 8 chr5 74930571 74930695 -77606564 + L2a LINE L2 3287 3418 -8 7 1156 788 149 35 0 chr5 74930861 74931002 -77606257 - MTC LTR MaLR -272 149 4 7 1156 406 150 238 0 chr5 74931003 74931083 -77606176 - B1_Mus1 SINE Alu -15 133 35 7 1156 191 36 0 35 chr5 74932326 74932355 -77604904 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1156 222 37 0 0 chr5 74932934 74932961 -77604298 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 7 1156 699 161 68 68 chr5 74933271 74933418 -77603841 - B1_Mm SINE Alu 0 147 1 7 1156 267 31 0 0 chr5 74933545 74933577 -77603682 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 7 1156 574 208 45 9 chr5 74933578 74933702 -77603557 - B1_Mur1 SINE Alu -12 137 1 7 1156 313 250 0 115 chr5 74933601 74933714 -77603545 - MT2B LTR ERVL -344 257 158 7 1156 505 330 113 13 chr5 74934269 74934641 -77602618 + L1MB8 LINE L1 5448 5856 -322 7 1156 326 256 157 48 chr5 74934660 74934890 -77602369 + L1MB8 LINE L1 5922 6176 -2 7 1156 828 187 52 26 chr5 74935088 74935280 -77601979 - B3 SINE B2 0 216 20 7 1156 640 183 42 34 chr5 74936483 74936602 -77600657 + PB1D9 SINE Alu 1 120 0 7 1156 584 227 68 8 chr5 74936631 74936764 -77600495 + B1_Mus1 SINE Alu 4 144 -4 7 1156 202 160 40 0 chr5 74939034 74939084 -77598175 + CT-rich Low_complexity Low_complexity 2 53 0 7 1156 382 257 86 99 chr5 74939084 74939102 -77598157 - ID_B1 SINE B4 0 224 127 7 1156 672 179 103 24 chr5 74939102 74939228 -77598031 - B1_Mur3 SINE Alu -13 136 1 7 1156 607 260 235 20 chr5 74939276 74939778 -77597481 - L1M2 LINE L1 -946 5197 4588 7 1156 321 338 106 23 chr5 74939804 74940022 -77597237 - L1M4 LINE L1 -1989 4157 3922 7 1156 198 0 0 0 chr5 74940356 74940378 -77596881 + (TTG)n Simple_repeat Simple_repeat 2 23 0 7 1156 910 193 14 0 chr5 74940389 74940534 -77596725 - B1_Mur2 SINE Alu 0 149 3 7 1156 922 240 86 25 chr5 74941075 74941272 -77595987 + B3 SINE B2 1 209 -7 7 1156 390 299 22 14 chr5 74941759 74941898 -77595361 - ID_B1 SINE B4 -1 223 84 7 1156 219 69 0 0 chr5 74944358 74944387 -77592872 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 1156 342 286 103 0 chr5 74945055 74945181 -77592078 - B1F SINE Alu -10 139 1 7 1156 386 252 37 18 chr5 74945401 74945510 -77591749 - PB1D7 SINE Alu 0 120 10 7 1156 255 290 31 31 chr5 74945426 74945522 -77591737 - ID_B1 SINE B4 -49 175 80 7 1156 899 99 13 47 chr5 74945533 74945553 -77591706 - B1_Mus1 SINE Alu -1 147 130 7 1156 252 0 0 0 chr5 74945553 74945581 -77591678 + (GGGTG)n Simple_repeat Simple_repeat 4 31 0 7 1156 899 99 13 47 chr5 74945581 74945709 -77591550 - B1_Mus1 SINE Alu -19 129 4 7 1156 404 305 226 21 chr5 74945921 74946253 -77591006 - HAL1 LINE L1 -1362 1145 746 7 1156 543 53 0 0 chr5 74946308 74946383 -77590876 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 7 1156 505 269 12 30 chr5 74946748 74946913 -77590346 - RSINE1 SINE B4 0 165 4 7 1156 320 189 0 13 chr5 74947327 74947402 -77589857 + (TA)n Simple_repeat Simple_repeat 2 75 0 7 1156 782 311 119 58 chr5 74947651 74947939 -77589320 - Tigger7 DNA MER2_type -37 668 341 7 1156 189 0 0 0 chr5 74947939 74947960 -77589299 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1156 1213 29 0 0 chr5 74947960 74948098 -77589161 - B1_Mm SINE Alu -9 138 1 7 1156 782 306 105 60 chr5 74948098 74948431 -77588828 - Tigger7 DNA MER2_type -2151 340 2 7 1156 219 352 144 55 chr5 74948449 74948797 -77588462 - L2a LINE L2 -330 3096 2718 7 1156 239 271 72 90 chr5 74949121 74949287 -77587972 - RSINE1 SINE B4 0 165 3 7 1156 207 302 0 31 chr5 74949352 74949417 -77587842 + L2c LINE L2 3320 3382 -5 7 1156 1685 80 24 12 chr5 74949988 74950240 -77587019 - L1Md_F2 LINE L1 -2 6580 6326 7 1156 34 24 0 0 chr5 74950347 74950388 -77586871 + AT_rich Low_complexity Low_complexity 1 41 0 7 1156 1464 231 120 79 chr5 74950395 74951053 -77586206 - Lx9 LINE L1 -22 7622 6938 7 1156 768 235 144 0 chr5 74951205 74951448 -77585811 - Lx9 LINE L1 -707 6937 6660 7 1156 2743 265 23 40 chr5 74951784 74952613 -77584646 - Lx7 LINE L1 -449 7247 6433 7 1156 585 215 81 7 chr5 74953976 74954112 -77583147 - B1_Mur1 SINE Alu -1 148 3 7 1156 279 358 53 22 chr5 74954370 74954596 -77582663 + MIR SINE MIR 28 260 -2 7 1156 832 340 163 45 chr5 74954669 74955508 -77581751 - L2 LINE L2 -497 2922 1985 7 1156 272 256 33 99 chr5 74955546 74955637 -77581622 + MT2B LTR ERVL 153 237 -364 7 1156 547 216 121 0 chr5 74955574 74955690 -77581569 + B1_Mur4 SINE Alu 21 150 0 7 1156 325 266 122 66 chr5 74956031 74956244 -77581015 - L2 LINE L2 -1816 1603 1379 7 1156 195 42 0 0 chr5 74957109 74957133 -77580126 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1156 310 284 38 66 chr5 74957753 74957964 -77579295 - L1MC4 LINE L1 -146 7896 7692 7 1156 364 335 134 13 chr5 74958019 74958324 -77578935 - L1MC4 LINE L1 -413 7629 7288 7 1156 323 224 0 95 chr5 74958328 74958412 -77578847 + ID4 SINE ID 8 83 0 7 1156 849 247 42 10 chr5 74958525 74958717 -77578542 - B3 SINE B2 -4 212 15 7 1156 753 247 18 6 chr5 74958725 74958896 -77578363 - B3 SINE B2 -10 206 34 7 1156 270 250 33 0 chr5 74958891 74958951 -77578308 - PB1D10 SINE Alu -39 78 17 7 1156 432 0 0 0 chr5 74958981 74959029 -77578230 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1156 274 249 76 63 chr5 74959035 74959220 -77578039 - L1MC4 LINE L1 -1001 6881 6700 7 1156 193 309 37 93 chr5 74959240 74959347 -77577912 + L4 LINE RTE 1667 1767 -262 7 1156 372 247 140 0 chr5 74959876 74959969 -77577290 - PB1D10 SINE Alu -6 111 6 7 1156 183 42 0 0 chr5 74960064 74960088 -77577171 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1156 22 0 0 0 chr5 74961552 74961574 -77575685 + AT_rich Low_complexity Low_complexity 1 22 0 7 1156 548 182 314 0 chr5 74961819 74961978 -77575281 + B3 SINE B2 2 210 -6 7 1156 760 263 60 10 chr5 74962774 74962974 -77574285 + B3 SINE B2 1 210 -6 7 1156 26 0 0 0 chr5 74962974 74963000 -77574259 + AT_rich Low_complexity Low_complexity 1 26 0 7 1156 195 270 0 16 chr5 74963684 74963748 -77573511 + MIR SINE MIR 119 181 -81 7 1156 224 237 0 0 chr5 74964316 74964354 -77572905 + ID4_ SINE ID 35 72 -11 7 1156 261 75 0 0 chr5 74964986 74965026 -77572233 + (TTGG)n Simple_repeat Simple_repeat 2 41 0 7 1156 1117 90 0 0 chr5 74965026 74965171 -77572088 - B1_Mus2 SINE Alu -2 145 1 7 1156 554 275 67 0 chr5 74965461 74965610 -77571649 + B3A SINE B2 3 161 -37 7 1156 26 0 0 0 chr5 74966945 74966971 -77570288 + AT_rich Low_complexity Low_complexity 1 26 0 7 1156 432 0 0 0 chr5 74967246 74967294 -77569965 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1156 225 154 0 0 chr5 74967294 74967333 -77569926 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1156 201 239 0 0 chr5 74968526 74968572 -77568687 + CT-rich Low_complexity Low_complexity 1 46 0 7 1156 1170 49 14 0 chr5 74968973 74969117 -77568142 + B1_Mm SINE Alu 2 147 0 7 1156 458 270 53 82 chr5 74970103 74970294 -77566965 - L1MA7 LINE L1 -1 6290 6095 7 1156 608 273 52 0 chr5 74970294 74970466 -77566793 - B3A SINE B2 -17 181 1 7 1156 458 270 53 82 chr5 74970466 74970726 -77566533 - L1MA7 LINE L1 -197 6094 5852 7 1156 21 0 0 0 chr5 74970962 74970983 -77566276 + AT_rich Low_complexity Low_complexity 1 21 0 7 1156 423 257 109 50 chr5 74970991 74971110 -77566149 + RSINE1 SINE B4 6 131 -34 7 1156 33 56 0 0 chr5 74971834 74971888 -77565371 + AT_rich Low_complexity Low_complexity 1 54 0 7 1156 228 67 0 0 chr5 74971936 74971966 -77565293 + (T)n Simple_repeat Simple_repeat 1 30 0 7 1156 921 62 131 0 chr5 74971966 74972096 -77565163 - B1_Mus2 SINE Alu 0 147 1 7 1156 1045 210 45 0 chr5 74972295 74972495 -77564764 + B3 SINE B2 2 210 -6 7 1157 802 229 73 65 chr5 74973800 74974047 -77563212 - B4A SINE B4 -18 274 26 7 1157 379 211 26 11 chr5 74974072 74974162 -77563097 - PB1D7 SINE Alu -6 121 16 7 1157 285 291 0 75 chr5 74974087 74974180 -77563079 - ID_B1 SINE B4 -57 167 82 7 1157 314 330 43 43 chr5 74974216 74974333 -77562926 - PB1D10 SINE Alu 0 117 1 7 1157 597 272 75 19 chr5 74974333 74974401 -77562858 - ID SINE ID -145 79 3 7 1157 477 181 151 25 chr5 74974561 74974680 -77562579 + B1_Mus1 SINE Alu 7 140 -8 7 1157 9247 72 35 6 chr5 74975622 74977059 -77560200 - MusHAL1 LINE L1 -641 2071 593 7 1157 258 105 0 0 chr5 74977234 74977272 -77559987 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1157 783 0 0 0 chr5 74977439 74977526 -77559733 + (TTCTC)n Simple_repeat Simple_repeat 1 87 0 7 1157 258 32 0 0 chr5 74977529 74977560 -77559699 + (TCCCC)n Simple_repeat Simple_repeat 5 35 0 7 1157 189 0 0 0 chr5 74977573 74977594 -77559665 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1157 201 311 131 90 chr5 74978006 74978151 -77559108 + MER5A DNA MER1_type 33 183 -6 8 1157 554 224 88 15 chr5 74978247 74978383 -77558876 + B1_Mur1 SINE Alu 2 147 -2 8 1157 432 104 0 0 chr5 74978408 74978475 -77558784 + (CATA)n Simple_repeat Simple_repeat 2 68 0 8 1157 1381 230 139 3 chr5 74979039 74979405 -77557854 - MTD LTR MaLR 0 419 4 8 1157 218 186 0 0 chr5 74980498 74980541 -77556718 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1157 22 0 0 0 chr5 74983271 74983293 -77553966 + AT_rich Low_complexity Low_complexity 1 22 0 8 1157 559 28 0 0 chr5 74984376 74984447 -77552812 + B1_Mur4 SINE Alu 80 150 0 8 1157 632 246 220 18 chr5 74984567 74984840 -77552419 - Tigger1 DNA MER2_type -197 2221 1894 8 1157 232 261 24 145 chr5 74985409 74985520 -77551739 + RMER15 LTR ERVL 347 450 -125 8 1157 1155 68 0 20 chr5 74985520 74985671 -77551588 + B1_Mus1 SINE Alu 1 148 0 8 1157 232 261 24 145 chr5 74985671 74985704 -77551555 + RMER15 LTR ERVL 451 471 -104 8 1157 229 336 45 9 chr5 74985704 74985815 -77551444 + ID4_ SINE ID 2 116 -36 8 1157 384 280 114 51 chr5 74985826 74985984 -77551275 - MER34A1 LTR ERV1 -362 225 58 8 1157 204 352 110 0 chr5 74986309 74986400 -77550859 + MIR SINE MIR 2 102 -160 8 1157 960 181 55 60 chr5 74987271 74987488 -77549771 - B3 SINE B2 0 216 1 8 1157 186 43 0 0 chr5 74987546 74987569 -77549690 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1157 670 250 21 7 chr5 74987569 74987714 -77549545 - B3 SINE B2 -22 194 48 8 1157 192 211 0 0 chr5 74987881 74987952 -77549307 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 8 1157 442 292 40 13 chr5 74989733 74989882 -77547377 - RSINE1 SINE B4 -2 163 11 8 1157 1268 165 237 107 chr5 74994870 74995339 -77541920 + MT2A LTR ERVL 4 533 0 8 1157 1363 77 22 5 chr5 74995958 74996142 -77541117 - B2_Mm1t SINE B2 -6 187 1 8 1157 876 272 31 10 chr5 74996496 74996689 -77540570 + B3 SINE B2 1 197 -19 8 1157 255 93 0 0 chr5 74997717 74997760 -77539499 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8 1157 207 325 145 0 chr5 74998127 74998244 -77539015 + MIR SINE MIR 2 135 -127 8 1157 492 218 0 0 chr5 74999913 75000000 -77537259 + B1F1 SINE Alu 2 88 -61 8 1157 716 262 0 0 chr5 75004309 75004454 -77532805 - RSINE1 SINE B4 -17 148 4 1 1157 403 305 98 55 chr5 75004499 75004773 -77532486 + B4A SINE B4 5 290 -2 2 1157 424 301 30 85 chr5 75005178 75005378 -77531881 + LTR80B LTR ERVL 136 324 -260 3 1157 677 268 28 28 chr5 75005504 75005715 -77531544 - B3 SINE B2 -4 212 2 4 1157 752 262 0 35 chr5 75005927 75006097 -77531162 + RSINE1 SINE B4 2 165 0 5 1157 731 237 16 38 chr5 75007088 75007272 -77529987 - B3A SINE B2 -16 182 3 6 1157 360 186 294 8 chr5 75008146 75008265 -77528994 + MLT1A0 LTR MaLR 5 157 -208 7 1157 556 236 24 60 chr5 75008301 75008468 -77528791 + B4A SINE B4 1 161 -131 8 1157 244 299 11 0 chr5 75008501 75008588 -77528671 + RSINE1 SINE B4 78 165 0 9 1157 260 282 0 96 chr5 75008687 75008781 -77528478 + MLT1A0 LTR MaLR 281 365 0 7 1157 1242 77 42 0 chr5 75009038 75009206 -77528053 + B2_Mm2 SINE B2 7 181 -14 1 1157 409 133 26 26 chr5 75010515 75010592 -77526667 - PB1D10 SINE Alu -2 115 39 1 1157 383 294 47 0 chr5 75010959 75011044 -77526215 - PB1D10 SINE Alu -28 89 1 1 1157 337 319 16 66 chr5 75011124 75011245 -77526014 + RSINE1 SINE B4 46 160 -5 1 1157 557 177 9 0 chr5 75013589 75013702 -77523557 + GA-rich Low_complexity Low_complexity 1 114 0 1 1157 216 172 0 0 chr5 75014284 75014342 -77522917 + G-rich Low_complexity Low_complexity 1 58 0 1 1157 180 0 0 0 chr5 75014517 75014537 -77522722 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1157 180 0 0 0 chr5 75014537 75014556 -77522703 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 1157 250 77 18 55 chr5 75014969 75015024 -77522235 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 1 1157 241 329 143 25 chr5 75015567 75015804 -77521455 - RMER12 LTR ERVK -321 1001 737 1 1157 405 0 0 0 chr5 75016665 75016710 -77520549 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 2 1157 766 151 56 28 chr5 75016780 75016917 -77520342 + B1_Mus1 SINE Alu 1 142 -6 2 1157 762 11 0 0 chr5 75016917 75017004 -77520255 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 2 1157 275 305 28 22 chr5 75017313 75017491 -77519768 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1157 236 315 0 30 chr5 75018956 75019090 -77518169 + GA-rich Low_complexity Low_complexity 3 132 0 2 1157 374 322 5 68 chr5 75019192 75019418 -77517841 + (TCCA)n Simple_repeat Simple_repeat 1 211 0 2 1157 198 0 0 0 chr5 75021392 75021414 -77515845 + (TGG)n Simple_repeat Simple_repeat 3 24 0 2 1157 306 67 0 0 chr5 75021597 75021642 -77515617 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1157 209 312 31 0 chr5 75021642 75021706 -77515553 + MIR SINE MIR 88 153 -109 2 1157 198 0 0 0 chr5 75021707 75021729 -77515530 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1157 1121 64 0 0 chr5 75021729 75021870 -77515389 - B1_Mm SINE Alu 0 147 7 3 1157 605 231 8 23 chr5 75021998 75022131 -77515128 + B1F2 SINE Alu 18 148 -1 3 1157 324 0 0 0 chr5 75022430 75022466 -77514793 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1157 440 248 129 50 chr5 75022532 75022672 -77514587 + RSINE1 SINE B4 3 153 -12 3 1157 1267 73 83 17 chr5 75022743 75022904 -77514355 + B2_Mm2 SINE B2 1 159 -36 3 1157 405 0 0 0 chr5 75022904 75022949 -77514310 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1157 1267 73 83 17 chr5 75022949 75022968 -77514291 + B2_Mm2 SINE B2 160 193 -2 3 1157 328 307 26 9 chr5 75023590 75023705 -77513554 + PB1D10 SINE Alu 1 117 0 3 1157 1019 201 0 11 chr5 75025376 75025562 -77511697 + URR1B DNA MER1_type 42 225 0 3 1157 429 289 64 32 chr5 75025643 75025800 -77511459 - RSINE1 SINE B4 -1 164 3 3 1157 24 32 0 0 chr5 75025800 75025831 -77511428 + AT_rich Low_complexity Low_complexity 1 31 0 3 1157 360 64 0 0 chr5 75025877 75025924 -77511335 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 4 1157 521 274 0 0 chr5 75025938 75026055 -77511204 - PB1D10 SINE Alu 0 117 1 4 1157 552 320 13 0 chr5 75026265 75026421 -77510838 + B3A SINE B2 15 172 -26 4 1157 227 231 19 0 chr5 75026422 75026474 -77510785 + (CAAT)n Simple_repeat Simple_repeat 4 56 0 4 1157 1663 262 78 18 chr5 75026856 75027408 -77509851 + Lx7 LINE L1 6766 7350 -346 4 1157 214 48 77 46 chr5 75027415 75027480 -77509779 + T-rich Low_complexity Low_complexity 1 67 0 4 1157 827 224 52 38 chr5 75027813 75027853 -77509406 - B3 SINE B2 0 216 171 4 1157 522 31 0 0 chr5 75027853 75027917 -77509342 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1157 827 224 52 38 chr5 75027917 75028089 -77509170 - B3 SINE B2 -46 170 2 4 1157 577 270 42 30 chr5 75028103 75028271 -77508988 + B3A SINE B2 4 173 -25 4 1157 209 294 0 0 chr5 75028289 75028340 -77508919 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 4 1157 392 349 138 43 chr5 75028386 75028662 -77508597 + Kanga1c DNA Tc2 428 729 0 5 1157 297 0 0 0 chr5 75028794 75028827 -77508432 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 5 1157 356 259 79 82 chr5 75030316 75030551 -77506708 - Charlie8 DNA MER1_type -2149 279 36 5 1157 367 283 7 55 chr5 75030648 75030672 -77506587 + ID SINE ID 60 76 -148 5 1157 650 197 0 32 chr5 75030672 75030798 -77506461 + B1_Mus2 SINE Alu 1 122 -25 5 1157 794 320 81 45 chr5 75030893 75031400 -77505859 - RLTR11A2 LTR ERVK 0 527 3 5 1157 250 342 77 43 chr5 75032157 75032365 -77504894 - MIRb SINE MIR -27 241 27 5 1157 321 308 107 88 chr5 75032361 75032792 -77504467 + L2 LINE L2 2351 2789 -630 5 1157 346 273 45 0 chr5 75033266 75033354 -77503905 - RSINE1 SINE B4 -30 135 44 5 1157 346 208 56 0 chr5 75033372 75033444 -77503815 + PB1D10 SINE Alu 32 107 -10 5 1157 286 304 8 129 chr5 75033886 75034018 -77503241 - PB1D10 SINE Alu -1 116 1 6 1157 203 245 107 48 chr5 75034542 75034645 -77502614 - L2b LINE L2 -146 3241 3130 6 1157 211 213 27 0 chr5 75035111 75035186 -77502073 + CT-rich Low_complexity Low_complexity 4 80 0 6 1157 578 227 0 0 chr5 75035191 75035301 -77501958 - PB1D10 SINE Alu -6 111 2 6 1157 374 234 267 34 chr5 75036671 75036817 -77500442 - MIR SINE MIR -7 255 76 6 1157 228 333 49 70 chr5 75037465 75037607 -77499652 - MIRb SINE MIR -9 259 121 6 1157 245 285 119 24 chr5 75037718 75037844 -77499415 - MIR SINE MIR -39 223 86 6 1157 304 272 57 19 chr5 75037857 75037962 -77499297 - MER81 DNA AcHobo -4 110 2 6 1157 295 260 109 39 chr5 75038720 75038848 -77498411 + B1F SINE Alu 10 146 -3 6 1157 474 75 0 0 chr5 75038980 75039047 -77498212 + (CA)n Simple_repeat Simple_repeat 2 68 0 6 1157 583 173 45 9 chr5 75039715 75039826 -77497433 - B3A SINE B2 -83 115 1 7 1157 770 280 16 45 chr5 75040319 75040562 -77496697 - Lx8 LINE L1 -191 7282 7047 7 1157 213 39 0 0 chr5 75041767 75041793 -77495466 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1157 396 341 76 50 chr5 75041898 75042160 -77495099 + ORR1E LTR MaLR 87 355 -4 7 1157 204 288 123 0 chr5 75042425 75042498 -77494761 - MIRb SINE MIR -182 86 5 7 1157 1910 233 24 28 chr5 75042999 75043506 -77493753 + RLTR20B3 LTR ERVK 78 573 -4 7 1157 399 174 0 0 chr5 75043559 75043645 -77493614 + CT-rich Low_complexity Low_complexity 2 87 0 7 1157 445 353 111 0 chr5 75044238 75044445 -77492814 + Tigger5 DNA MER2_type 1 230 -2176 7 1157 905 228 66 0 chr5 75044591 75044788 -77492471 - ID_B1 SINE B4 -13 211 2 7 1157 856 285 37 33 chr5 75045428 75045700 -77491559 + MER2 DNA MER2_type 26 298 -47 7 1157 247 332 79 43 chr5 75045710 75045987 -77491272 + RMER12 LTR ERVK 771 1057 -265 8 1157 320 202 61 98 chr5 75046301 75046433 -77490826 + L1MA5A LINE L1 5770 5896 -401 8 1157 234 0 0 0 chr5 75046433 75046459 -77490800 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 8 1157 293 261 153 72 chr5 75046459 75046561 -77490698 + L1MA5A LINE L1 5905 6023 -277 8 1157 260 212 98 24 chr5 75046846 75046928 -77490331 - MER2 DNA MER2_type -108 237 150 8 1157 441 0 0 0 chr5 75047192 75047241 -77490018 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1157 240 278 32 53 chr5 75047322 75047417 -77489842 + L1M6 LINE L1 231 323 -6173 8 1157 747 229 7 7 chr5 75048187 75048341 -77488918 + B3 SINE B2 61 214 -2 8 1157 216 0 0 0 chr5 75048344 75048368 -77488891 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1157 519 17 0 0 chr5 75048658 75048718 -77488541 + (TC)n Simple_repeat Simple_repeat 2 61 0 8 1157 252 59 0 0 chr5 75048765 75048799 -77488460 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1157 814 139 0 0 chr5 75049016 75049138 -77488121 - B1_Mus1 SINE Alu -3 145 24 9 1157 647 286 8 10 chr5 75049443 75049607 -77487652 + ID_B1 SINE B4 58 219 -73 9 1157 554 219 173 23 chr5 75051312 75051485 -77485774 + MER20 DNA MER1_type 1 199 -20 9 1157 669 281 54 61 chr5 75051576 75051853 -77485406 - B4A SINE B4 -8 284 10 9 1157 199 283 37 19 chr5 75051858 75051912 -77485347 + MER5A DNA MER1_type 129 183 -6 9 1157 240 111 0 0 chr5 75052382 75052418 -77484841 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 9 1157 483 18 0 0 chr5 75053150 75053206 -77484053 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1157 441 0 0 0 chr5 75053277 75053326 -77483933 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1157 1980 161 41 22 chr5 75054783 75055151 -77482108 + ORR1C1 LTR MaLR 1 375 -3 9 1157 459 0 0 0 chr5 75057334 75057385 -77479874 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1157 197 65 0 31 chr5 75058471 75058503 -77478756 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1157 2650 36 3 0 chr5 75059191 75059499 -77477760 - L1Md_F2 LINE L1 -321 6261 5953 1 1157 2528 56 0 15 chr5 75059499 75059827 -77477432 + L1Md_F2 LINE L1 6248 6570 -12 1 1157 21 0 0 0 chr5 75061816 75061837 -77475422 + AT_rich Low_complexity Low_complexity 1 21 0 1 1157 414 0 0 0 chr5 75061837 75061883 -77475376 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1157 763 262 18 67 chr5 75061885 75062110 -77475149 - B4 SINE B4 -36 256 43 1 1157 2965 155 198 88 chr5 75062402 75063161 -77474098 + RMER21B LTR ERV1 1 842 0 1 1157 417 39 0 0 chr5 75063298 75063349 -77473910 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1157 227 396 47 0 chr5 75064219 75064325 -77472934 - MIRb SINE MIR -140 128 18 1 1157 182 375 0 0 chr5 75064741 75064797 -77472462 - MIR SINE MIR -92 116 61 1 1157 180 312 94 0 chr5 75064817 75064881 -77472378 + MIR3 SINE MIR 118 187 -21 1 1157 467 247 162 0 chr5 75065410 75065564 -77471695 - MIR SINE MIR -9 253 75 1 1157 470 218 18 9 chr5 75067067 75067178 -77470081 + PB1D10 SINE Alu 5 116 -1 1 1157 360 234 162 30 chr5 75067232 75067399 -77469860 + L1MC5 LINE L1 7708 7896 -65 1 1157 342 350 81 5 chr5 75067715 75067888 -77469371 - MER121 Unknown Unknown -136 276 91 1 1157 281 250 28 0 chr5 75067888 75067960 -77469299 + ID4 SINE ID 3 76 -7 1 1157 342 350 81 5 chr5 75067960 75067984 -77469275 - MER121 Unknown Unknown -322 90 65 1 1157 213 39 0 0 chr5 75070557 75070583 -77466676 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1157 349 315 99 20 chr5 75071824 75071976 -77465283 + MLT1C LTR MaLR 304 467 0 1 1157 318 253 12 12 chr5 75072443 75072527 -77464732 + PB1D10 SINE Alu 22 105 -12 1 1157 232 173 0 133 chr5 75072873 75072933 -77464326 - B1_Mur1 SINE Alu -6 143 92 1 1157 360 0 0 0 chr5 75073463 75073503 -77463756 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1157 239 340 45 71 chr5 75074777 75074932 -77462327 + Tigger12c DNA MER2_type 20 170 -564 1 1157 245 304 74 94 chr5 75074958 75075107 -77462152 + MIR SINE MIR 46 191 -71 1 1157 302 295 56 75 chr5 75075712 75075873 -77461386 + MLT1J LTR MaLR 285 442 -70 1 1157 379 297 57 57 chr5 75076126 75076167 -77461092 + B4 SINE B4 48 88 -204 1 1157 839 189 0 51 chr5 75076167 75076292 -77460967 + B1_Mur2 SINE Alu 2 124 -25 1 1157 3447 25 5 2 chr5 75076292 75076687 -77460572 + MTA_Mm LTR MaLR 1 396 0 1 1157 839 189 0 51 chr5 75076687 75076717 -77460542 + B1_Mur2 SINE Alu 125 149 0 1 1157 825 262 19 14 chr5 75078108 75078321 -77458938 - ID_B1 SINE B4 -9 215 2 1 1157 667 270 10 16 chr5 75078397 75078567 -77458692 + ID_B1 SINE B4 81 250 -42 1 1157 544 271 73 73 chr5 75079270 75079489 -77457770 + MLT1D LTR MaLR 287 505 0 1 1157 1734 197 116 8 chr5 75080286 75080649 -77456610 + MTD LTR MaLR 1 402 -17 1 1157 25 0 0 0 chr5 75080770 75080795 -77456464 + AT_rich Low_complexity Low_complexity 1 25 0 1 1157 552 311 262 8 chr5 75080840 75081096 -77456163 - ORR1E LTR MaLR -49 321 1 1 1157 384 111 0 0 chr5 75081239 75081311 -77455948 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1157 225 280 37 25 chr5 75082302 75082406 -77454853 + MIR SINE MIR 158 267 -1 1 1157 207 114 0 0 chr5 75082854 75082889 -77454370 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1 1157 282 248 144 68 chr5 75083722 75084066 -77453193 + ORR1D2 LTR MaLR 5 376 -2 1 1157 438 20 0 0 chr5 75084297 75084348 -77452911 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1157 477 0 0 0 chr5 75084348 75084400 -77452859 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1157 524 165 20 30 chr5 75084406 75084506 -77452753 - PB1D9 SINE Alu -16 104 6 1 1157 352 320 81 15 chr5 75084533 75084730 -77452529 - MIRb SINE MIR -26 242 33 1 1157 242 279 0 41 chr5 75084974 75085071 -77452188 + C-rich Low_complexity Low_complexity 2 94 0 1 1157 21 0 0 0 chr5 75085188 75085209 -77452050 + AT_rich Low_complexity Low_complexity 1 21 0 1 1157 954 291 50 86 chr5 75085664 75086064 -77451195 + MTE2a LTR MaLR 25 405 -14 1 1157 261 83 0 0 chr5 75086977 75087013 -77450246 + (GGGAGA)n Simple_repeat Simple_repeat 2 37 0 1 1157 692 245 83 21 chr5 75087079 75087271 -77449988 + MER2 DNA MER2_type 103 306 -39 1 1157 900 243 126 7 chr5 75088157 75088426 -77448833 + MTEb LTR MaLR 79 379 0 1 1157 279 225 42 14 chr5 75088438 75088510 -77448749 - MER96B DNA hAT -331 86 13 1 1157 297 254 0 0 chr5 75089003 75089058 -77448201 - B1F1 SINE Alu -89 60 6 1 1157 615 227 67 185 chr5 75089214 75089544 -77447715 + B4 SINE B4 2 292 0 1 1157 289 308 0 13 chr5 75089766 75089857 -77447402 + ID4_ SINE ID 5 93 -59 1 1157 183 80 0 0 chr5 75091164 75091189 -77446070 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1 1157 878 209 6 24 chr5 75091513 75091680 -77445579 + ID_B1 SINE B4 58 221 -3 1 1157 486 228 57 29 chr5 75091849 75091989 -77445270 - B1F SINE Alu -5 144 1 1 1157 1440 113 18 13 chr5 75092640 75092865 -77444394 + URR1A DNA MER1_type 1 226 0 1 1157 352 276 75 40 chr5 75092981 75093155 -77444104 + MLT1D LTR MaLR 46 225 -280 1 1157 286 363 126 47 chr5 75093167 75093358 -77443901 + MLT1D LTR MaLR 296 501 -4 1 1157 181 356 65 28 chr5 75094329 75094436 -77442823 - MIRb SINE MIR -28 240 130 1 1157 413 181 30 24 chr5 75094469 75094633 -77442626 + (TCCA)n Simple_repeat Simple_repeat 2 166 0 1 1157 207 364 8 83 chr5 75094700 75094743 -77442516 - L3 LINE CR1 -124 4365 4330 1 1157 219 69 0 0 chr5 75094743 75094772 -77442487 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1157 207 364 8 83 chr5 75094772 75094848 -77442411 - L3 LINE CR1 -160 4329 4255 1 1157 267 321 12 0 chr5 75095843 75095927 -77441332 - MIR SINE MIR -147 115 31 1 1157 288 246 0 42 chr5 75096995 75097067 -77440192 - MIRm SINE MIR -112 164 96 1 1157 261 83 0 0 chr5 75098231 75098267 -77438992 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1157 221 83 0 27 chr5 75098707 75098744 -77438515 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 1 1157 239 246 16 0 chr5 75101459 75101520 -77435739 + CT-rich Low_complexity Low_complexity 4 65 0 1 1157 763 268 24 0 chr5 75101520 75101725 -77435534 - ID_B1 SINE B4 -13 211 2 1 1157 368 255 68 10 chr5 75101740 75101843 -77435416 - PB1D10 SINE Alu -8 109 1 1 1157 26 0 0 0 chr5 75102841 75102867 -77434392 + AT_rich Low_complexity Low_complexity 1 26 0 1 1157 209 293 105 13 chr5 75103417 75103493 -77433766 - L2 LINE L2 -3331 88 6 1 1158 267 54 0 0 chr5 75106241 75106278 -77430981 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1158 452 155 95 52 chr5 75109305 75109421 -77427838 - Lx9 LINE L1 -7 7637 7517 1 1158 219 69 0 0 chr5 75109427 75109456 -77427803 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1158 26 0 0 0 chr5 75109487 75109513 -77427746 + AT_rich Low_complexity Low_complexity 1 26 0 1 1158 941 237 46 0 chr5 75111476 75111670 -77425589 - B3 SINE B2 -13 203 1 1 1158 22 35 0 0 chr5 75111884 75111913 -77425346 + AT_rich Low_complexity Low_complexity 1 29 0 1 1158 717 268 37 44 chr5 75112521 75112822 -77424437 - L1M4 LINE L1 -397 5787 5482 1 1158 770 231 39 70 chr5 75113015 75113327 -77423932 + L1_Mur3 LINE L1 4459 4760 -1120 1 1158 375 190 0 0 chr5 75113336 75113394 -77423865 + B1_Mur1 SINE Alu 84 141 -8 1 1158 21 36 0 0 chr5 75113413 75113441 -77423818 + AT_rich Low_complexity Low_complexity 1 28 0 1 1158 2485 177 75 34 chr5 75113452 75113960 -77423299 - RLTR24 LTR ERV1 0 529 1 1 1158 784 293 8 58 chr5 75113963 75114224 -77423035 + B4A SINE B4 1 248 -44 1 1158 615 277 46 41 chr5 75114576 75114846 -77422413 - BGLII_B LTR ERVK -76 365 8 1 1158 699 12 0 0 chr5 75115240 75115320 -77421939 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 1 1158 1146 50 0 14 chr5 75115343 75115485 -77421774 - B1_Mus1 SINE Alu -8 140 1 1 1158 567 78 0 0 chr5 75115538 75115615 -77421644 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1158 183 42 0 0 chr5 75115660 75115684 -77421575 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1158 301 264 10 62 chr5 75116315 75116331 -77420928 - B3A SINE B2 -106 92 1 1 1158 554 161 0 0 chr5 75116331 75116412 -77420847 - B4A SINE B4 -211 81 1 1 1158 33 0 0 0 chr5 75118309 75118342 -77418917 + AT_rich Low_complexity Low_complexity 1 33 0 1 1158 667 291 0 21 chr5 75118357 75118543 -77418716 - B3A SINE B2 -16 182 1 1 1158 28 29 0 0 chr5 75118550 75118585 -77418674 + AT_rich Low_complexity Low_complexity 1 35 0 1 1158 933 157 206 6 chr5 75118660 75118840 -77418419 - B3 SINE B2 0 216 1 1 1158 330 285 28 116 chr5 75118906 75119156 -77418103 + L1M4 LINE L1 4972 5199 -947 1 1158 23 0 0 0 chr5 75119484 75119507 -77417752 + AT_rich Low_complexity Low_complexity 1 23 0 1 1158 1107 105 0 0 chr5 75120066 75120315 -77416944 + (CA)n Simple_repeat Simple_repeat 1 249 0 1 1158 324 0 0 0 chr5 75120407 75120443 -77416816 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1158 1501 228 66 6 chr5 75120619 75120968 -77416291 - ORR1D2 LTR MaLR 0 370 1 1 1158 3983 247 81 84 chr5 75120968 75121302 -77415957 - ORR1D2-int LTR MaLR 0 1370 998 1 1158 441 54 0 0 chr5 75121302 75121358 -77415901 + (TATG)n Simple_repeat Simple_repeat 3 58 0 1 1158 3983 247 81 84 chr5 75121358 75122348 -77414911 - ORR1D2-int LTR MaLR -373 997 50 1 1158 216 122 0 0 chr5 75124705 75124746 -77412513 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1158 402 21 0 0 chr5 75124746 75124792 -77412467 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1158 189 307 80 61 chr5 75125351 75125514 -77411745 + MIRc SINE MIR 16 181 -87 1 1158 250 285 52 3 chr5 75126821 75126933 -77410326 + MIR SINE MIR 13 131 -137 1 1158 312 237 0 38 chr5 75127877 75127956 -77409303 - Kanga1c DNA Tc2 -15 714 639 1 1158 1564 281 80 22 chr5 75128568 75129078 -77408181 - MER82 DNA MER2_type -16 637 98 2 1158 328 295 10 21 chr5 75129222 75129319 -77407940 + B4A SINE B4 1 96 -196 2 1158 396 0 0 0 chr5 75129393 75129437 -77407822 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1158 336 24 0 0 chr5 75129437 75129477 -77407782 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1158 273 250 0 0 chr5 75129866 75129942 -77407317 + GA-rich Low_complexity Low_complexity 2 77 0 2 1158 250 274 197 48 chr5 75130941 75131129 -77406130 - L1ME1 LINE L1 -151 6028 5813 2 1158 261 0 0 0 chr5 75131258 75131287 -77405972 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 1158 308 200 0 0 chr5 75131327 75131382 -77405877 - PB1D10 SINE Alu -8 109 55 2 1158 315 314 70 76 chr5 75132782 75132954 -77404305 + MER20 DNA MER1_type 31 201 -18 2 1158 264 324 0 0 chr5 75133028 75133102 -77404157 + C-rich Low_complexity Low_complexity 1 74 0 2 1158 1186 230 68 63 chr5 75133102 75133468 -77403791 + ORR1D2 LTR MaLR 3 370 0 2 1158 411 326 149 33 chr5 75133555 75133736 -77403523 + B4A SINE B4 89 290 -2 2 1158 252 0 0 0 chr5 75133791 75133819 -77403440 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1158 707 249 82 14 chr5 75134006 75134214 -77403045 + ID_B1 SINE B4 2 223 -1 2 1158 423 335 72 24 chr5 75135512 75135763 -77401496 + L4 LINE RTE 1655 1917 -112 2 1158 211 322 0 0 chr5 75136032 75136091 -77401168 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1158 487 237 199 66 chr5 75136301 75136482 -77400777 - B4 SINE B4 -5 287 83 2 1158 490 231 25 25 chr5 75137101 75137221 -77400038 - ID_B1 SINE B4 -1 223 104 2 1158 1878 111 10 178 chr5 75137461 75137854 -77399405 + ORR1A2 LTR MaLR 1 327 0 2 1158 674 308 37 21 chr5 75137943 75138271 -77398988 - L1MB3 LINE L1 -208 5975 5643 2 1158 834 290 36 20 chr5 75138275 75138327 -77398932 + MTEa LTR MaLR 1 51 -328 2 1158 809 157 170 45 chr5 75138327 75138527 -77398732 - URR1B DNA MER1_type 0 225 1 2 1158 834 290 36 20 chr5 75138527 75138724 -77398535 + MTEa LTR MaLR 52 254 -125 2 1158 287 313 64 47 chr5 75138782 75138953 -77398306 + MTEa LTR MaLR 206 379 0 2 1158 502 305 74 32 chr5 75138953 75139315 -77397944 - L1MB3 LINE L1 -535 5643 5273 2 1158 1176 74 0 0 chr5 75139499 75139647 -77397612 - B1_Mus1 SINE Alu 0 148 1 2 1158 236 278 9 27 chr5 75139748 75139859 -77397400 + A-rich Low_complexity Low_complexity 3 111 0 2 1158 729 249 48 19 chr5 75139875 75140084 -77397175 - Lx7 LINE L1 -391 7305 7091 2 1158 354 222 56 0 chr5 75140088 75140160 -77397099 - Lx7 LINE L1 -951 6745 6670 2 1158 180 0 0 0 chr5 75140222 75140242 -77397017 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1158 1786 293 77 29 chr5 75140248 75140902 -77396357 - Lx8 LINE L1 -253 7220 6536 2 1158 1346 255 67 3 chr5 75140893 75141048 -77396211 + L1_Mur3 LINE L1 5181 5354 -526 2 1158 251 28 28 0 chr5 75141048 75141084 -77396175 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2 1158 1346 255 67 3 chr5 75141084 75141302 -77395957 + L1_Mur3 LINE L1 5355 5578 -302 2 1158 521 252 238 5 chr5 75141309 75141532 -77395727 + ORR1D1 LTR MaLR 3 277 -97 2 1158 305 320 41 73 chr5 75141489 75141579 -77395680 + RMER10A LTR ERVL 212 296 -146 2 1158 309 26 0 0 chr5 75141579 75141617 -77395642 + (TCTCTG)n Simple_repeat Simple_repeat 4 41 0 2 1158 305 320 41 73 chr5 75141617 75141745 -77395514 + RMER10A LTR ERVL 297 423 -19 2 1158 967 322 49 9 chr5 75141735 75142080 -77395179 - MER47A DNA MER2_type -7 359 1 2 1158 219 36 0 0 chr5 75142371 75142399 -77394860 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1158 330 26 0 0 chr5 75142399 75142438 -77394821 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1158 1110 121 12 0 chr5 75142576 75142742 -77394517 + URR1A DNA MER1_type 58 225 -1 2 1158 650 103 0 27 chr5 75142808 75142918 -77394341 + (TTAGGG)n Simple_repeat Simple_repeat 3 109 0 2 1158 202 341 125 39 chr5 75143491 75143723 -77393536 - L4 LINE RTE -1058 971 720 2 1158 324 333 0 0 chr5 75143724 75143814 -77393445 - MIRb SINE MIR -8 260 171 2 1158 1387 211 141 29 chr5 75143876 75144252 -77393007 - MTD LTR MaLR -1 418 1 2 1158 3529 30 0 0 chr5 75144315 75144718 -77392541 - L1Md_A LINE L1 0 6582 6180 2 1158 1972 127 3 76 chr5 75144965 75145307 -77391952 + ORR1A4 LTR MaLR 5 321 -8 2 1158 387 132 0 0 chr5 75146495 75146563 -77390696 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1158 180 303 69 60 chr5 75147501 75147617 -77389642 + L2 LINE L2 2712 2828 -591 2 1158 351 0 0 0 chr5 75147957 75147996 -77389263 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1158 876 316 12 39 chr5 75148008 75148265 -77388994 - B4 SINE B4 -22 270 21 2 1158 271 336 75 20 chr5 75148558 75148704 -77388555 - RSINE1 SINE B4 -8 157 4 2 1158 450 225 224 43 chr5 75149598 75149714 -77387545 - B1_Mm SINE Alu -5 142 6 2 1158 476 236 57 7 chr5 75150034 75150175 -77387084 - B1F1 SINE Alu -1 148 1 2 1158 793 89 79 16 chr5 75151776 75151902 -77385357 + B1_Mur4 SINE Alu 17 150 0 2 1158 243 88 0 0 chr5 75152020 75152054 -77385205 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1158 301 310 58 40 chr5 75152548 75152704 -77384555 + MLT1H LTR MaLR 432 579 0 2 1158 356 98 102 0 chr5 75152962 75153037 -77384222 - B2_Mm1t SINE B2 -91 102 1 2 1158 566 274 5 78 chr5 75153147 75153282 -77383977 + ORR1E LTR MaLR 151 276 -83 2 1158 1822 150 125 6 chr5 75153282 75153610 -77383649 + ORR1B2 LTR MaLR 1 367 0 2 1158 566 274 5 78 chr5 75153610 75153663 -77383596 + ORR1E LTR MaLR 277 326 -33 2 1158 212 0 36 0 chr5 75153663 75153691 -77383568 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1158 566 274 5 78 chr5 75153691 75153707 -77383552 + ORR1E LTR MaLR 327 341 -18 2 1158 858 304 128 26 chr5 75153991 75154860 -77382399 + Lx6 LINE L1 4943 5921 -1775 2 1158 1227 106 6 0 chr5 75154959 75155129 -77382130 + B2_Mm2 SINE B2 1 171 -24 2 1158 587 272 97 17 chr5 75156105 75156281 -77380978 + B3A SINE B2 3 192 -6 2 1158 343 304 71 8 chr5 75156607 75156733 -77380526 - RSINE1 SINE B4 -31 134 1 2 1158 242 264 14 27 chr5 75156828 75156902 -77380357 + MER3 DNA MER1_type 137 209 0 2 1158 459 213 0 0 chr5 75157075 75157150 -77380109 + Lx6 LINE L1 7058 7132 -328 2 1158 2050 147 78 39 chr5 75157154 75157634 -77379625 - RMER6A LTR ERVK 0 756 132 2 1158 306 0 0 0 chr5 75157634 75157668 -77379591 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1158 2050 146 67 49 chr5 75157668 75157782 -77379477 - RMER6A LTR ERVK -625 131 2 2 1158 1263 249 32 13 chr5 75157785 75158094 -77379165 + Lx6 LINE L1 7133 7447 -13 2 1158 1101 245 141 7 chr5 75158298 75158602 -77378657 + ORR1E LTR MaLR 4 348 -11 2 1158 260 347 14 0 chr5 75158768 75158840 -77378419 - ID SINE ID -140 84 12 2 1158 352 306 73 75 chr5 75159775 75160033 -77377226 - ORR1D2 LTR MaLR 0 370 111 2 1158 1023 231 0 29 chr5 75160033 75160242 -77377017 - B3 SINE B2 -13 203 1 2 1158 343 322 108 111 chr5 75160242 75160340 -77376919 - ORR1D2 LTR MaLR -249 110 6 2 1158 185 268 0 67 chr5 75160498 75160558 -77376701 + L2 LINE L2 2532 2587 -832 2 1158 296 264 33 11 chr5 75160533 75160625 -77376634 + MIRb SINE MIR 114 207 -61 2 1158 340 254 212 0 chr5 75161287 75161405 -77375854 + MIR SINE MIR 96 228 -34 2 1158 375 277 97 28 chr5 75161527 75161775 -77375484 - L1ME3 LINE L1 -301 5939 5671 2 1158 180 281 120 33 chr5 75161958 75162050 -77375209 + MIRc SINE MIR 37 136 -132 2 1158 589 269 0 28 chr5 75163192 75163337 -77373922 - B1_Mur1 SINE Alu -8 141 1 2 1158 925 263 68 87 chr5 75163707 75164074 -77373185 + MTEb LTR MaLR 20 379 0 2 1158 344 289 64 51 chr5 75164380 75164537 -77372722 + ORR1E LTR MaLR 28 186 -173 2 1158 215 128 20 78 chr5 75164539 75164590 -77372669 + CT-rich Low_complexity Low_complexity 6 53 0 2 1158 783 266 142 10 chr5 75166395 75166706 -77370553 - L1MCc LINE L1 -4902 1521 1170 2 1158 226 405 8 8 chr5 75166885 75167017 -77370242 - L1MCc LINE L1 -5650 773 642 2 1158 1003 306 99 16 chr5 75167088 75167603 -77369656 - L1MCc LINE L1 -5849 574 17 2 1158 579 15 0 0 chr5 75167748 75167816 -77369443 + (TC)n Simple_repeat Simple_repeat 1 68 0 2 1158 342 0 0 0 chr5 75167816 75167853 -77369406 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1158 1090 196 69 65 chr5 75168121 75168422 -77368837 + ORR1D1 LTR MaLR 7 357 -2 2 1158 571 345 71 43 chr5 75168432 75168875 -77368384 + L2a LINE L2 2682 3146 -280 2 1158 408 67 0 0 chr5 75169048 75169108 -77368151 + (TC)n Simple_repeat Simple_repeat 2 61 0 2 1158 384 281 0 0 chr5 75169113 75169195 -77368064 - ID4_ SINE ID 0 83 2 2 1158 297 203 0 45 chr5 75169200 75169267 -77367992 - PB1D10 SINE Alu -7 110 47 2 1158 387 0 0 0 chr5 75169810 75169853 -77367406 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1158 1325 73 20 30 chr5 75170827 75171024 -77366235 - B2_Mm2 SINE B2 0 195 1 2 1158 230 286 0 0 chr5 75171762 75171811 -77365448 - MIRm SINE MIR 0 276 228 2 1158 973 299 82 20 chr5 75171827 75172179 -77365080 - MLT1C LTR MaLR 0 467 94 2 1158 567 288 151 5 chr5 75172188 75172394 -77364865 + Tigger5 DNA MER2_type 1 236 -2170 2 1158 299 283 111 19 chr5 75172392 75172500 -77364759 + Tigger5 DNA MER2_type 2288 2405 -1 2 1158 432 312 146 0 chr5 75172597 75172741 -77364518 - MTE2b LTR MaLR -9 370 206 2 1158 620 257 7 7 chr5 75172810 75172947 -77364312 + ID_B1 SINE B4 88 224 0 2 1158 418 320 12 15 chr5 75173101 75173246 -77364013 + MIRb SINE MIR 3 155 -113 2 1158 259 235 131 10 chr5 75173325 75173424 -77363835 - PB1D7 SINE Alu -9 111 1 2 1158 444 314 64 38 chr5 75174085 75174320 -77362939 - Charlie7a DNA MER1_type -2 270 30 2 1158 479 204 18 36 chr5 75174764 75174876 -77362383 - PB1D10 SINE Alu -7 110 1 2 1158 253 283 112 73 chr5 75174876 75175055 -77362204 + L2 LINE L2 1310 1495 -1924 2 1158 1219 285 225 32 chr5 75175196 75175819 -77361440 + RMER13A LTR ERVK 1 743 -117 2 1158 1305 160 148 14 chr5 75176264 75176555 -77360704 + MTC LTR MaLR 61 390 -31 2 1158 1043 108 0 20 chr5 75176584 75176735 -77360524 - B1_Mus1 SINE Alu 0 148 1 2 1158 463 219 122 23 chr5 75177035 75177166 -77360093 - B1F2 SINE Alu -1 148 5 2 1158 653 315 22 35 chr5 75177199 75177518 -77359741 - Lx8 LINE L1 -2 7471 7157 3 1158 601 259 0 6 chr5 75177603 75177734 -77359525 + B1_Mur2 SINE Alu 5 130 -19 3 1158 196 313 80 29 chr5 75177948 75178086 -77359173 + L2a LINE L2 3256 3400 -26 3 1158 405 0 0 0 chr5 75178256 75178301 -77358958 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 1158 231 36 0 0 chr5 75178330 75178358 -77358901 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 1158 441 0 0 0 chr5 75178385 75178434 -77358825 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1158 2542 39 10 3 chr5 75178966 75179277 -77357982 + L1_Mus3 LINE L1 6320 6632 -6 3 1158 441 329 123 34 chr5 75179284 75179642 -77357617 - L2a LINE L2 -21 3405 3016 3 1158 244 329 0 0 chr5 75180347 75180423 -77356836 - ID4 SINE ID -6 77 2 3 1158 443 286 4 3 chr5 75180455 75180568 -77356691 + PB1D10 SINE Alu 6 119 -1 3 1158 654 259 84 42 chr5 75180681 75180943 -77356316 - B4A SINE B4 -19 273 1 3 1158 3021 36 2 113 chr5 75181159 75181593 -77355666 - RLTR10 LTR ERVK -4 386 1 3 1158 17232 23 8 1 chr5 75181595 75183525 -77353734 - RLTR10-int LTR ERVK -3 1984 41 3 1158 2898 39 2 142 chr5 75183541 75183990 -77353269 - RLTR10 LTR ERVK -4 386 1 3 1158 192 77 0 0 chr5 75184770 75184796 -77352463 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 3 1158 416 333 28 7 chr5 75185166 75185311 -77351948 - L2a LINE L2 0 3426 3279 3 1158 299 221 8 117 chr5 75185399 75185527 -77351732 - L1M3 LINE L1 -692 5497 5384 3 1158 281 350 19 10 chr5 75185688 75185792 -77351467 - MIRb SINE MIR -80 188 84 3 1158 1008 295 105 66 chr5 75187075 75187327 -77349932 + Lx8 LINE L1 6943 7228 -245 3 1158 189 0 0 0 chr5 75187327 75187348 -77349911 + (GGGGA)n Simple_repeat Simple_repeat 5 25 0 3 1158 1008 295 105 66 chr5 75187348 75187581 -77349678 + Lx8 LINE L1 7229 7446 -27 3 1158 805 280 152 3 chr5 75187770 75188060 -77349199 + MER2 DNA MER2_type 8 340 -5 3 1158 301 308 112 40 chr5 75188826 75188978 -77348281 - HAL1-3A_ME LINE L1 -419 2439 2277 3 1158 187 403 32 45 chr5 75189378 75189534 -77347725 - MIRb SINE MIR -27 241 88 3 1158 665 302 69 69 chr5 75190183 75190517 -77346742 - ORR1E LTR MaLR -18 341 8 3 1158 378 214 8 125 chr5 75190883 75191011 -77346248 + LTR79 LTR ERVL 69 181 -346 3 1158 228 254 75 0 chr5 75191144 75191211 -77346048 + LTR79 LTR ERVL 382 453 -74 3 1158 319 106 0 29 chr5 75191943 75192011 -77345248 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1158 328 244 0 25 chr5 75192065 75192145 -77345114 - PB1D10 SINE Alu -38 79 2 3 1158 265 299 0 15 chr5 75192092 75192160 -77345099 - ID_B1 SINE B4 -89 135 69 3 1158 315 71 0 0 chr5 75192423 75192465 -77344794 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 3 1158 307 215 50 3 chr5 75192465 75192553 -77344706 - L1Md_T LINE L1 -693 5889 5764 3 1158 1096 251 16 4 chr5 75193063 75193315 -77343944 + B4A SINE B4 3 257 -35 3 1158 433 283 61 79 chr5 75193315 75193480 -77343779 + RSINE1 SINE B4 4 165 0 3 1158 669 199 6 11 chr5 75193485 75193663 -77343596 + (TA)n Simple_repeat Simple_repeat 1 177 0 3 1158 1208 28 28 0 chr5 75193706 75193849 -77343410 - B1_Mus1 SINE Alu 0 148 2 3 1158 347 250 326 0 chr5 75193857 75194001 -77343258 - B3A SINE B2 -7 191 1 3 1158 396 0 0 0 chr5 75194043 75194087 -77343172 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1158 1036 98 299 0 chr5 75194318 75194492 -77342767 - URR1A DNA MER1_type 0 226 1 3 1158 334 274 0 27 chr5 75194551 75194626 -77342633 - B1F1 SINE Alu -76 73 1 3 1158 3602 142 219 14 chr5 75194626 75195360 -77341899 - RMER19B LTR ERVK -17 885 1 3 1158 273 374 40 0 chr5 75195374 75195473 -77341786 + Charlie17a DNA MER1_type 2 104 -115 3 1158 387 92 0 0 chr5 75195540 75195605 -77341654 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1158 471 18 0 0 chr5 75196157 75196213 -77341046 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1158 812 256 216 15 chr5 75196873 75197146 -77340113 - MER82 DNA MER2_type -281 372 45 3 1158 504 0 0 0 chr5 75197915 75197971 -77339288 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1158 447 68 0 0 chr5 75197971 75198029 -77339230 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1158 509 275 52 32 chr5 75198286 75198440 -77338819 - MIRb SINE MIR -8 260 104 3 1158 378 0 0 0 chr5 75198508 75198550 -77338709 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 1158 335 326 62 28 chr5 75199586 75199618 -77337641 + MIRb SINE MIR 38 73 -195 3 1158 279 0 0 0 chr5 75199618 75199649 -77337610 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1158 335 326 62 28 chr5 75199649 75199793 -77337466 + MIRb SINE MIR 74 219 -49 3 1158 1468 192 80 7 chr5 75199829 75200117 -77337142 + RLTR27 LTR ERVK 1 309 0 3 1158 509 311 62 28 chr5 75200164 75200455 -77336804 + L1MB7 LINE L1 5861 6161 -23 3 1158 543 170 0 0 chr5 75200553 75200653 -77336606 + GA-rich Low_complexity Low_complexity 3 102 0 3 1158 369 0 0 0 chr5 75201496 75201537 -77335722 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1158 303 175 0 0 chr5 75201605 75201662 -77335597 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1158 618 267 62 59 chr5 75201681 75201971 -77335288 - B4 SINE B4 0 292 2 3 1158 378 0 0 0 chr5 75201989 75202031 -77335228 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 1158 1225 150 92 0 chr5 75202681 75202888 -77334371 - URR1A DNA MER1_type 0 226 1 3 1158 441 180 0 0 chr5 75203415 75203504 -77333755 + (TG)n Simple_repeat Simple_repeat 2 90 0 3 1158 689 271 10 77 chr5 75203507 75203715 -77333544 - B4A SINE B4 -94 198 5 3 1158 496 292 98 18 chr5 75203719 75203883 -77333376 + MER58A DNA MER1_type 46 222 -2 3 1158 373 214 140 20 chr5 75204026 75204126 -77333133 - PB1D7 SINE Alu -8 112 1 3 1158 250 203 68 0 chr5 75204130 75204189 -77333070 + MIRb SINE MIR 179 241 -27 3 1158 336 262 59 75 chr5 75204391 75204577 -77332682 - MLT1K LTR MaLR -17 578 396 3 1158 390 204 0 0 chr5 75204577 75204685 -77332574 + CT-rich Low_complexity Low_complexity 2 109 0 3 1158 235 342 62 9 chr5 75204769 75204881 -77332378 + Cheshire DNA MER1_type 11 128 -2292 3 1158 183 184 0 0 chr5 75204957 75204995 -77332264 + GA-rich Low_complexity Low_complexity 3 40 0 3 1158 551 326 39 21 chr5 75205753 75206032 -77331227 - L1MEd LINE L1 -5833 286 3 3 1158 231 269 15 0 chr5 75207750 75207817 -77329442 + B1F1 SINE Alu 82 149 0 3 1158 1302 84 50 0 chr5 75208126 75208305 -77328954 - B2_Mm2 SINE B2 -7 188 1 3 1158 631 249 49 53 chr5 75208565 75208811 -77328448 + HAL1b LINE L1 1461 1705 -304 3 1158 845 122 0 6 chr5 75208921 75209078 -77328181 + (TCTA)n Simple_repeat Simple_repeat 1 156 0 3 1158 186 333 0 0 chr5 75209123 75209174 -77328085 - MIRc SINE MIR -52 216 166 3 1158 205 105 0 50 chr5 75209974 75210014 -77327245 + G-rich Low_complexity Low_complexity 1 38 0 3 1158 748 206 0 16 chr5 75210268 75210451 -77326808 + GA-rich Low_complexity Low_complexity 1 180 0 3 1158 208 139 0 0 chr5 75210570 75210606 -77326653 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1158 251 355 146 38 chr5 75210898 75211185 -77326074 - MLT1K LTR MaLR -100 495 178 3 1158 466 258 115 15 chr5 75211234 75211364 -77325895 - B1F SINE Alu 0 149 7 3 1158 227 242 174 101 chr5 75211244 75211382 -77325877 - B4 SINE B4 -74 218 71 3 1158 323 237 71 10 chr5 75211451 75211549 -77325710 - L2a LINE L2 -2 3424 3321 3 1158 459 291 70 97 chr5 75211549 75211777 -77325482 - MLT1A0 LTR MaLR 0 365 144 3 1158 414 327 41 41 chr5 75211792 75211836 -77325423 - PB1D10 SINE Alu -2 148 104 3 1158 412 111 22 0 chr5 75211836 75211926 -77325333 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 1158 414 325 17 17 chr5 75211926 75212028 -77325231 - PB1D10 SINE Alu -12 105 2 3 1158 543 295 64 142 chr5 75212037 75212318 -77324941 - B4 SINE B4 -19 273 15 3 1158 477 264 18 66 chr5 75212320 75212486 -77324773 - MLT1A0 LTR MaLR -202 163 6 3 1158 1253 185 14 0 chr5 75213603 75213825 -77323434 - URR1B DNA MER1_type 0 225 1 3 1158 352 298 9 17 chr5 75213876 75213992 -77323267 + MIRb SINE MIR 116 230 -38 3 1158 270 348 31 43 chr5 75214422 75214584 -77322675 - MIR3 SINE MIR -29 179 20 3 1158 358 286 35 18 chr5 75215045 75215159 -77322100 + B1F SINE Alu 1 116 -33 3 1158 32 0 0 0 chr5 75215166 75215198 -77322061 + AT_rich Low_complexity Low_complexity 1 32 0 3 1158 866 197 8 132 chr5 75215223 75215480 -77321779 + URR1A DNA MER1_type 1 225 -1 3 1158 297 56 0 0 chr5 75215950 75215986 -77321273 + U2 snRNA snRNA 1 36 -152 3 1158 192 125 0 0 chr5 75216189 75216221 -77321038 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1158 238 289 48 108 chr5 75217220 75217406 -77319853 - LTR41 LTR ERVL -34 724 550 3 1158 1128 224 54 97 chr5 75217700 75218090 -77319169 + MTE2a LTR MaLR 6 378 -1 3 1158 258 327 34 92 chr5 75218090 75218383 -77318876 - LTR41 LTR ERVL -491 277 2 3 1158 405 280 9 0 chr5 75219230 75219337 -77317922 - PB1 SINE Alu -19 108 1 3 1158 245 343 55 39 chr5 75219504 75219656 -77317603 - MIRc SINE MIR -88 180 23 3 1158 522 337 92 15 chr5 75220383 75220645 -77316614 - MLT1L LTR MaLR -182 428 147 3 1158 494 296 93 72 chr5 75220747 75221372 -77315887 - L1ME1 LINE L1 -6 6158 5505 3 1158 797 323 84 86 chr5 75221421 75221993 -77315266 - MER20B DNA MER1_type -32 751 181 3 1158 329 309 9 55 chr5 75222033 75222252 -77315007 + L1MC4 LINE L1 7694 7902 -140 3 1158 989 79 0 7 chr5 75222610 75222751 -77314508 + (GGAGAA)n Simple_repeat Simple_repeat 3 142 0 3 1158 971 125 162 25 chr5 75223354 75223551 -77313708 - URR1B DNA MER1_type 0 225 2 3 1158 963 0 0 0 chr5 75223654 75223761 -77313498 + (TCTCC)n Simple_repeat Simple_repeat 4 110 0 3 1158 418 268 114 0 chr5 75223761 75223884 -77313375 - RSINE1 SINE B4 -26 139 3 3 1158 501 309 12 29 chr5 75224993 75225292 -77311967 + MLT1B LTR MaLR 12 386 -4 3 1158 228 264 19 0 chr5 75225770 75225823 -77311436 - MLT1J LTR MaLR -145 367 314 4 1158 507 73 0 0 chr5 75225843 75225911 -77311348 + (GGGA)n Simple_repeat Simple_repeat 1 68 0 4 1158 247 188 0 148 chr5 75226945 75227026 -77310233 - MamRep434 DNA TcMar -5 421 353 4 1158 372 302 41 16 chr5 75227501 75227622 -77309637 + MIRb SINE MIR 34 157 -111 4 1158 403 326 92 72 chr5 75227695 75227946 -77309313 - B4A SINE B4 -16 276 21 4 1158 402 21 0 0 chr5 75228738 75228785 -77308474 + (TTG)n Simple_repeat Simple_repeat 2 48 0 4 1158 2432 157 69 17 chr5 75228785 75229264 -77307995 - RLTR11A2 LTR ERVK -23 504 1 4 1158 222 312 41 20 chr5 75229280 75229378 -77307881 + L2a LINE L2 3327 3426 0 4 1158 421 276 0 0 chr5 75229444 75229542 -77307717 + MTEb LTR MaLR 1 98 -281 4 1158 483 298 16 16 chr5 75229542 75229668 -77307591 + MTEb LTR MaLR 58 183 -196 4 1158 814 292 5 14 chr5 75229699 75229911 -77307348 + MTEb LTR MaLR 168 377 -2 4 1158 227 330 85 66 chr5 75230220 75230525 -77306734 - RLTR12B LTR ERVK -201 327 17 4 1158 1616 146 43 52 chr5 75230993 75231318 -77305941 + ORR1A4 LTR MaLR 8 329 0 4 1158 2015 174 22 11 chr5 75231849 75232209 -77305050 - MTC LTR MaLR 0 421 58 4 1158 470 282 18 0 chr5 75232241 75232351 -77304908 - B1F1 SINE Alu -37 112 1 4 1158 746 134 0 8 chr5 75232354 75232482 -77304777 + (TTC)n Simple_repeat Simple_repeat 3 129 0 4 1158 564 15 0 0 chr5 75232479 75232544 -77304715 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1158 563 214 0 0 chr5 75232551 75232654 -77304605 - PB1D9 SINE Alu -14 106 4 4 1158 208 305 0 17 chr5 75232744 75232804 -77304455 + L2c LINE L2 3327 3385 -2 4 1158 543 31 0 0 chr5 75233230 75233295 -77303964 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 4 1158 230 309 35 35 chr5 75235033 75235147 -77302112 - L1MA10 LINE L1 0 6334 6221 4 1159 252 0 0 0 chr5 75236061 75236089 -77301170 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 4 1159 1166 264 11 35 chr5 75237487 75237774 -77299485 - B4 SINE B4 -4 288 9 4 1159 370 240 52 10 chr5 75238067 75238164 -77299095 - PB1D7 SINE Alu -19 101 1 4 1159 424 269 18 27 chr5 75238444 75238555 -77298704 - PB1D10 SINE Alu -2 115 6 4 1159 397 321 19 9 chr5 75238733 75238840 -77298419 + MLT1K LTR MaLR 166 273 -322 4 1159 535 228 63 125 chr5 75238829 75238855 -77298404 - B4 SINE B4 -35 257 206 4 1159 1108 57 0 0 chr5 75238855 75238996 -77298263 - B1_Mus1 SINE Alu -2 146 6 4 1159 535 228 63 125 chr5 75238996 75239088 -77298171 - B4 SINE B4 -35 205 11 4 1159 300 350 133 39 chr5 75239072 75239357 -77297902 + MLT1K LTR MaLR 223 534 -61 4 1159 323 286 114 40 chr5 75240574 75240749 -77296510 + LTR33A_ LTR ERVL 282 469 -62 4 1159 634 173 101 16 chr5 75241010 75241139 -77296120 - B1_Mur2 SINE Alu -9 140 1 4 1159 920 325 33 115 chr5 75241334 75241759 -77295500 + MLT2D LTR ERVL 5 394 -20 4 1159 2536 72 28 39 chr5 75242179 75242542 -77294717 + RLTR10D LTR ERVK 1 359 0 4 1159 655 169 32 8 chr5 75243185 75243310 -77293949 + B1_Mur1 SINE Alu 21 148 -1 4 1159 186 133 0 0 chr5 75243310 75243340 -77293919 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 4 1159 274 347 32 0 chr5 75243653 75243748 -77293511 + PB1D10 SINE Alu 1 98 -19 4 1159 297 377 96 60 chr5 75244353 75244377 -77292882 - MLT1D LTR MaLR -16 451 420 4 1159 982 120 177 5 chr5 75244377 75244569 -77292690 - URR1B DNA MER1_type 0 225 1 4 1159 550 342 112 41 chr5 75244569 75244960 -77292299 - MLT1D LTR MaLR -48 419 20 4 1159 348 302 140 113 chr5 75245156 75245571 -77291688 - MLT1J LTR MaLR -86 426 1 4 1159 468 321 48 48 chr5 75245649 75245878 -77291381 - MIRb SINE MIR 0 268 40 4 1159 398 297 46 15 chr5 75246144 75246274 -77290985 - MTEa LTR MaLR 0 379 246 4 1159 880 304 74 19 chr5 75246742 75247121 -77290138 - LTR86A1 LTR ERVL -113 400 1 4 1159 21 0 0 0 chr5 75247936 75247957 -77289302 + AT_rich Low_complexity Low_complexity 1 21 0 4 1159 1450 231 65 38 chr5 75247958 75248327 -77288932 + Lx5 LINE L1 5986 6364 -686 4 1159 2732 209 39 16 chr5 75248322 75248882 -77288377 + Lx5 LINE L1 6478 7050 0 4 1159 414 0 0 0 chr5 75248937 75248983 -77288276 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1159 926 297 63 94 chr5 75248983 75249471 -77287788 - L1MC1 LINE L1 -117 6216 5745 4 1159 3640 44 53 4 chr5 75249471 75249924 -77287335 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1159 926 297 63 94 chr5 75249924 75250018 -77287241 - L1MC1 LINE L1 -589 5744 5652 4 1159 201 129 47 31 chr5 75250020 75250084 -77287175 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1159 530 252 0 0 chr5 75250097 75250204 -77287055 - PB1D7 SINE Alu -2 118 12 4 1159 295 328 25 16 chr5 75250837 75250958 -77286301 + MLT1D LTR MaLR 267 388 -117 4 1159 4487 179 141 47 chr5 75251399 75252536 -77284723 + Lx4B LINE L1 5814 7057 -1 4 1159 1247 153 9 44 chr5 75252750 75252976 -77284283 + URR1A DNA MER1_type 3 220 -6 4 1159 775 23 7 51 chr5 75253040 75253177 -77284082 + (CA)n Simple_repeat Simple_repeat 1 131 0 4 1159 309 261 93 59 chr5 75253626 75253744 -77283515 + MLT1J2 LTR MaLR 327 448 0 4 1159 399 325 38 105 chr5 75254007 75254320 -77282939 - B4A SINE B4 0 292 1 4 1159 193 323 32 16 chr5 75254752 75254815 -77282444 + MER5B DNA MER1_type 112 175 -3 4 1159 388 338 129 33 chr5 75257279 75257551 -77279708 - MLT1K LTR MaLR -2 593 296 4 1159 609 330 125 33 chr5 75258267 75258596 -77278663 + ORR1E LTR MaLR 1 359 0 4 1159 892 164 0 20 chr5 75259013 75259162 -77278097 + B1_Mus1 SINE Alu 3 148 0 4 1159 408 298 26 9 chr5 75259834 75259949 -77277310 + PB1D10 SINE Alu 1 117 0 4 1159 309 296 98 30 chr5 75260005 75260169 -77277090 - MER45A DNA Tip100 -3 175 1 4 1159 1050 102 0 0 chr5 75260238 75260375 -77276884 + B1_Mus1 SINE Alu 3 139 -9 4 1159 486 0 0 0 chr5 75260393 75260447 -77276812 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1159 396 0 0 0 chr5 75260447 75260490 -77276769 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1159 232 256 0 0 chr5 75261240 75261283 -77275976 + PB1D10 SINE Alu 66 108 -9 4 1159 374 277 85 17 chr5 75261493 75261669 -77275590 - L1M3 LINE L1 -642 5670 5483 4 1159 939 279 100 6 chr5 75261759 75262249 -77275010 - L1M3 LINE L1 -809 5488 4947 4 1159 403 291 14 36 chr5 75262263 75262402 -77274857 - RMER15 LTR ERVL -104 471 336 4 1159 360 0 0 0 chr5 75264133 75264173 -77273086 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1159 3557 90 26 2 chr5 75264842 75265341 -77271918 - Lx3_Mus LINE L1 -1 7008 6498 4 1159 248 146 83 0 chr5 75265693 75265741 -77271518 - MLT1J LTR MaLR -51 461 410 4 1159 965 197 57 42 chr5 75265747 75265959 -77271300 + B3 SINE B2 2 216 0 4 1159 359 368 34 17 chr5 75266166 75266343 -77270916 - MLT1J LTR MaLR -314 198 19 4 1159 224 30 30 0 chr5 75266511 75266544 -77270715 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1159 216 0 0 0 chr5 75266726 75266750 -77270509 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1159 662 291 81 96 chr5 75267085 75267283 -77269976 - B3A SINE B2 0 195 1 4 1159 598 216 0 0 chr5 75267283 75267385 -77269874 - PB1D9 SINE Alu -5 115 14 4 1159 507 17 0 0 chr5 75267387 75267447 -77269812 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1159 981 264 10 119 chr5 75267449 75267759 -77269500 - B4 SINE B4 -16 276 1 4 1159 549 324 153 37 chr5 75267865 75268186 -77269073 + MLT1J LTR MaLR 1 358 -154 4 1159 379 296 165 30 chr5 75268751 75268981 -77268278 - Lx8 LINE L1 -56 7417 7157 4 1159 318 217 0 0 chr5 75269137 75269197 -77268062 + RMER15 LTR ERVL 1 60 -515 4 1159 2233 194 41 92 chr5 75269241 75269825 -77267434 + RMER15 LTR ERVL 22 575 0 4 1159 504 93 0 0 chr5 75271475 75271550 -77265709 + (TGAA)n Simple_repeat Simple_repeat 1 75 0 4 1159 2512 267 147 55 chr5 75271979 75273039 -77264220 + Lx8 LINE L1 6316 7473 0 4 1159 787 261 113 58 chr5 75274170 75274378 -77262881 - L1MA9 LINE L1 -321 5991 5796 4 1159 522 0 0 0 chr5 75274378 75274436 -77262823 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1159 787 261 113 58 chr5 75274436 75274520 -77262739 - L1MA9 LINE L1 -517 5795 5683 4 1159 285 328 17 25 chr5 75274536 75274655 -77262604 + L1M2 LINE L1 5421 5538 -753 4 1159 316 295 159 17 chr5 75274795 75274971 -77262288 + B3 SINE B2 5 205 -11 4 1159 232 312 25 38 chr5 75275216 75275296 -77261963 + PB1D10 SINE Alu 2 80 -37 4 1159 506 228 21 0 chr5 75275321 75275466 -77261793 + GA-rich Low_complexity Low_complexity 3 150 0 4 1159 189 0 0 0 chr5 75275761 75275782 -77261477 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1159 559 116 0 40 chr5 75276307 75276433 -77260826 + (TG)n Simple_repeat Simple_repeat 2 122 0 4 1159 317 174 36 42 chr5 75277732 75277900 -77259359 + (CA)n Simple_repeat Simple_repeat 2 168 0 4 1159 312 228 38 0 chr5 75278129 75278208 -77259051 - ID4 SINE ID 0 83 2 4 1159 1171 69 0 0 chr5 75278236 75278375 -77258884 + B1_Mus1 SINE Alu 1 139 -9 4 1159 207 0 0 0 chr5 75278375 75278398 -77258861 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1159 385 230 0 13 chr5 75279188 75279263 -77257996 + 4.5SRNA scRNA scRNA 20 93 -1 4 1159 256 271 106 0 chr5 75279208 75279293 -77257966 + B1F2 SINE Alu 41 134 -15 4 1159 423 98 0 0 chr5 75279832 75279893 -77257366 + (TGG)n Simple_repeat Simple_repeat 1 61 0 4 1159 212 0 36 0 chr5 75280036 75280064 -77257195 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1159 321 141 38 25 chr5 75280397 75280477 -77256782 + GA-rich Low_complexity Low_complexity 5 85 0 4 1159 269 302 61 30 chr5 75280505 75280604 -77256655 + MTEa LTR MaLR 51 152 -227 4 1159 369 164 167 32 chr5 75280695 75280821 -77256438 + MTEa LTR MaLR 172 314 -65 4 1159 726 286 137 31 chr5 75281068 75281389 -77255870 - MTEa LTR MaLR -8 371 17 4 1159 3062 217 60 73 chr5 75281436 75282787 -77254472 - RMER1B Other Other 0 1066 45 5 1159 1832 61 0 0 chr5 75283104 75283335 -77253924 + MTB_Mm LTR MaLR 177 407 0 5 1159 754 146 79 14 chr5 75283682 75283821 -77253438 + B1_Mur4 SINE Alu 3 150 0 5 1159 340 310 61 20 chr5 75283839 75283987 -77253272 + MIR SINE MIR 85 238 -24 5 1159 1134 122 0 0 chr5 75284277 75284457 -77252802 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 1159 333 0 0 0 chr5 75284615 75284652 -77252607 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 5 1159 334 272 26 26 chr5 75284663 75284780 -77252479 - Lx7 LINE L1 -21 7675 7559 5 1159 965 64 0 8 chr5 75285766 75285880 -77251379 + B1_Mm SINE Alu 23 136 -11 5 1159 207 0 0 0 chr5 75285880 75285903 -77251356 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1159 965 64 0 8 chr5 75285903 75285914 -77251345 + B1_Mm SINE Alu 137 147 0 5 1159 1740 255 96 20 chr5 75286258 75286819 -77250440 + Lx7 LINE L1 7093 7696 0 5 1159 441 247 47 12 chr5 75287263 75287435 -77249824 + (TG)n Simple_repeat Simple_repeat 2 179 0 5 1159 456 51 0 0 chr5 75287436 75287495 -77249764 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 5 1159 431 18 18 0 chr5 75287495 75287550 -77249709 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1159 246 336 27 18 chr5 75287983 75288095 -77249164 + MIR SINE MIR 4 116 -146 5 1159 649 23 11 11 chr5 75288227 75288315 -77248944 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 1159 246 62 0 0 chr5 75288316 75288348 -77248911 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1159 379 227 264 0 chr5 75288972 75289082 -77248177 + RSINE1 SINE B4 3 141 -24 5 1159 234 81 0 0 chr5 75289086 75289123 -77248136 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 5 1159 291 71 0 0 chr5 75289125 75289167 -77248092 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1159 1746 209 99 38 chr5 75289251 75289754 -77247505 + RMER5 LTR ERV1 1 534 0 5 1159 993 291 63 18 chr5 75290589 75291030 -77246229 + L1MA10 LINE L1 5797 6257 -77 5 1159 420 77 0 0 chr5 75291033 75291098 -77246161 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1159 1341 195 189 81 chr5 75291117 75291598 -77245661 - MT2A LTR ERVL 0 533 1 5 1159 871 254 99 25 chr5 75292224 75292506 -77244753 - ORR1E LTR MaLR -10 349 47 5 1159 436 173 12 24 chr5 75292994 75293077 -77244182 + PB1D10 SINE Alu 33 114 -3 5 1159 1250 97 0 11 chr5 75293776 75293953 -77243306 + B2_Mm2 SINE B2 2 176 -19 5 1159 681 292 49 31 chr5 75294248 75294474 -77242785 + MTEb LTR MaLR 150 379 0 5 1159 705 82 0 0 chr5 75294588 75294685 -77242574 + (TC)n Simple_repeat Simple_repeat 2 98 0 5 1159 539 276 29 43 chr5 75294787 75294927 -77242332 + RSINE1 SINE B4 17 154 -11 5 1159 619 307 132 27 chr5 75295201 75295780 -77241479 - L1M2 LINE L1 -380 5497 4852 5 1159 6567 4 0 0 chr5 75295772 75296490 -77240769 + L1Md_A LINE L1 4869 5586 -297 5 1159 9216 2 0 0 chr5 75296490 75297486 -77239773 + L1Md_A LINE L1 5587 6582 0 5 1159 192 40 0 0 chr5 75297492 75297517 -77239742 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1159 1576 270 32 18 chr5 75297517 75298052 -77239207 - L1M2 LINE L1 -1241 4902 4284 5 1159 441 235 67 56 chr5 75298118 75298298 -77238961 - B3A SINE B2 -16 182 1 5 1159 776 285 112 47 chr5 75298305 75298735 -77238524 - L1_Mur3 LINE L1 -1666 4214 3757 5 1159 213 119 0 0 chr5 75298795 75298837 -77238422 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 5 1159 504 0 0 0 chr5 75299170 75299226 -77238033 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1159 266 0 29 0 chr5 75300227 75300261 -77236998 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1159 594 252 0 59 chr5 75300280 75300415 -77236844 - B1F SINE Alu -19 130 4 5 1159 325 333 14 83 chr5 75300415 75300446 -77236813 - B4 SINE B4 -207 85 65 5 1159 734 233 67 2 chr5 75300440 75300640 -77236619 + B3A SINE B2 6 216 0 5 1159 197 293 58 48 chr5 75300835 75300939 -77236320 - MIRb SINE MIR -6 262 158 5 1159 518 309 63 134 chr5 75301041 75301392 -77235867 - Charlie8 DNA MER1_type -2102 326 1 5 1159 214 321 0 0 chr5 75301644 75301697 -77235562 + polypurine Low_complexity Low_complexity 3 55 0 5 1159 2235 288 55 17 chr5 75302823 75303586 -77233673 + Lx8 LINE L1 6330 7121 -352 5 1159 584 132 9 0 chr5 75303674 75303780 -77233479 + (ATTG)n Simple_repeat Simple_repeat 1 107 0 5 1159 560 219 0 133 chr5 75303782 75303940 -77233319 - B1_Mur2 SINE Alu -10 139 3 5 1159 253 220 45 99 chr5 75304027 75304138 -77233121 + RMER1C Other Other 1224 1328 -14 5 1159 888 270 27 23 chr5 75304153 75304411 -77232848 + Lx8 LINE L1 6928 7186 -287 5 1159 383 281 7 92 chr5 75304757 75304910 -77232349 + B1F1 SINE Alu 1 140 -9 5 1159 308 316 91 3 chr5 75306568 75306696 -77230563 - MIRb SINE MIR -118 150 5 5 1159 849 264 166 38 chr5 75306912 75307255 -77230004 + MTD LTR MaLR 30 416 -3 5 1159 1006 298 63 40 chr5 75307406 75307756 -77229503 + MTEb LTR MaLR 6 363 -16 5 1159 411 258 77 67 chr5 75308049 75308257 -77229002 - B3A SINE B2 -14 202 1 5 1159 318 335 84 17 chr5 75308261 75308440 -77228819 + MER102c DNA MER1_type 66 256 -75 5 1159 405 267 96 40 chr5 75308489 75308614 -77228645 + MLT1H2 LTR MaLR 42 173 -316 5 1159 252 0 0 0 chr5 75308951 75308979 -77228280 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1159 744 74 0 0 chr5 75308980 75309088 -77228171 + (GA)n Simple_repeat Simple_repeat 2 109 0 5 1159 307 304 65 92 chr5 75309511 75309696 -77227563 + L1MEf LINE L1 741 920 -5280 5 1159 287 289 12 24 chr5 75309777 75309862 -77227397 + B1_Mus1 SINE Alu 11 94 -54 5 1159 457 292 8 111 chr5 75310634 75310869 -77226390 + L1M1 LINE L1 5606 5816 -487 5 1159 574 334 48 14 chr5 75310880 75311232 -77226027 + L1MA6 LINE L1 5933 6296 -4 5 1159 4171 266 51 18 chr5 75311388 75312632 -77224627 - Lx9 LINE L1 -18 7626 6342 5 1159 786 314 75 16 chr5 75313226 75313533 -77223726 + MLT1A1 LTR MaLR 8 332 -76 5 1159 776 123 135 64 chr5 75313737 75313893 -77223366 + ORR1B2 LTR MaLR 1 167 -200 5 1159 402 111 0 0 chr5 75313865 75313919 -77223340 + ORR1B2 LTR MaLR 341 394 0 5 1159 282 29 0 0 chr5 75314108 75314143 -77223116 + (CAA)n Simple_repeat Simple_repeat 1 35 0 5 1159 468 0 0 0 chr5 75314143 75314195 -77223064 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1159 238 255 120 20 chr5 75314239 75314339 -77222920 + ORSL-2b DNA Tip100 24 133 -375 5 1159 463 227 269 0 chr5 75314362 75314481 -77222778 + B3 SINE B2 1 151 -65 5 1159 513 121 0 0 chr5 75314482 75314565 -77222694 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 1159 533 308 132 71 chr5 75314703 75315089 -77222170 + MLT2B4 LTR ERVL 90 520 0 5 1159 319 244 56 56 chr5 75315475 75315618 -77221641 - ORSL-2a DNA Tip100 -79 263 121 5 1159 636 224 0 40 chr5 75317376 75317525 -77219734 + B3A SINE B2 1 143 -55 5 1159 378 0 0 0 chr5 75317529 75317571 -77219688 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1159 674 216 50 0 chr5 75317590 75317729 -77219530 - B3 SINE B2 -69 147 2 5 1159 672 77 0 0 chr5 75317922 75318013 -77219246 + (TCCC)n Simple_repeat Simple_repeat 2 92 0 5 1159 2266 259 42 49 chr5 75318013 75318707 -77218552 - Lx8 LINE L1 -2 7471 6783 5 1159 1218 81 6 34 chr5 75318713 75318892 -77218367 + B2_Mm2 SINE B2 1 174 -21 5 1159 810 262 64 25 chr5 75318993 75319228 -77218031 - Lx8 LINE L1 -756 6717 6474 5 1159 330 26 0 0 chr5 75319811 75319850 -77217409 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 5 1159 278 250 0 0 chr5 75320029 75320085 -77217174 - B1F2 SINE Alu -89 60 5 5 1159 198 167 229 0 chr5 75320473 75320521 -77216738 + MER5A DNA MER1_type 18 76 -113 5 1159 303 232 29 0 chr5 75320648 75320717 -77216542 + ID4_ SINE ID 2 72 -11 5 1159 456 105 0 0 chr5 75320734 75320810 -77216449 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1159 261 304 0 48 chr5 75320977 75321060 -77216199 + ID4 SINE ID 1 79 -4 5 1159 238 196 19 56 chr5 75321118 75321172 -77216087 + AluF_3 SINE Alu 157 208 -103 5 1159 273 146 0 0 chr5 75321207 75321255 -77216004 + (GGGA)n Simple_repeat Simple_repeat 2 49 0 5 1159 303 202 62 124 chr5 75321284 75321397 -77215862 + B3A SINE B2 93 198 0 5 1159 431 237 32 0 chr5 75321566 75321659 -77215600 - B1F SINE Alu -8 141 46 5 1159 730 284 65 51 chr5 75321834 75322109 -77215150 + Tigger7 DNA MER2_type 27 305 -2186 5 1159 366 209 64 186 chr5 75322180 75322249 -77215010 + Tigger7 DNA MER2_type 2250 2284 -207 5 1159 591 290 9 57 chr5 75322249 75322461 -77214798 - B3 SINE B2 -14 202 1 5 1159 366 209 64 186 chr5 75322461 75322579 -77214680 + Tigger7 DNA MER2_type 2285 2413 -78 5 1159 22 56 0 0 chr5 75322729 75322765 -77214494 + AT_rich Low_complexity Low_complexity 1 36 0 5 1159 445 324 124 0 chr5 75323028 75323253 -77214006 + MIR SINE MIR 9 266 -2 5 1159 252 263 287 11 chr5 75323306 75323498 -77213761 - MIRb SINE MIR -2 260 12 5 1159 569 103 27 44 chr5 75324601 75324784 -77212475 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1159 537 173 14 29 chr5 75324838 75325119 -77212140 + (TG)n Simple_repeat Simple_repeat 1 276 0 5 1159 28 0 0 0 chr5 75325333 75325361 -77211898 + AT_rich Low_complexity Low_complexity 1 28 0 5 1159 551 241 0 18 chr5 75325414 75325524 -77211735 - PB1D10 SINE Alu 0 117 10 5 1159 334 288 88 82 chr5 75326236 75326395 -77210864 - B4 SINE B4 -131 161 2 5 1159 23 0 0 0 chr5 75326588 75326611 -77210648 + AT_rich Low_complexity Low_complexity 1 23 0 5 1159 357 294 0 44 chr5 75326763 75326783 -77210476 + ID SINE ID 64 78 -146 5 1159 441 253 0 0 chr5 75326783 75326878 -77210381 + B1F SINE Alu 1 95 -54 5 1159 269 267 22 55 chr5 75326896 75326987 -77210272 - ORR1E LTR MaLR -4 366 279 5 1159 459 35 0 0 chr5 75327090 75327147 -77210112 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1159 258 330 0 48 chr5 75327262 75327367 -77209892 - B4A SINE B4 -191 101 2 6 1159 403 306 59 84 chr5 75327479 75327688 -77209571 - MIRb SINE MIR -45 217 20 6 1159 429 228 196 49 chr5 75327749 75327892 -77209367 - RSINE1 SINE B4 0 165 2 6 1159 316 248 190 0 chr5 75328991 75329112 -77208147 + RSINE1 SINE B4 5 148 -17 6 1159 366 23 0 0 chr5 75329115 75329158 -77208101 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1159 315 347 9 21 chr5 75329209 75329352 -77207907 + MIRb SINE MIR 118 262 0 6 1159 237 98 0 0 chr5 75329352 75329393 -77207866 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1159 944 226 14 14 chr5 75329405 75329620 -77207639 + B3 SINE B2 2 216 0 6 1159 1406 84 16 10 chr5 75329643 75329835 -77207424 - B2_Mm2 SINE B2 -1 194 2 6 1159 603 254 0 0 chr5 75330153 75330291 -77206968 - B1_Mur1 SINE Alu -8 141 4 6 1159 349 306 79 70 chr5 75330292 75330506 -77206753 - ORR1E LTR MaLR -40 319 104 5 1159 261 322 44 0 chr5 75330565 75330655 -77206604 - ORR1E LTR MaLR -265 94 1 5 1159 22 35 0 0 chr5 75330667 75330696 -77206563 + AT_rich Low_complexity Low_complexity 1 29 0 6 1159 892 227 19 29 chr5 75330696 75330905 -77206354 - B3 SINE B2 -8 208 2 6 1159 625 242 65 110 chr5 75331117 75331317 -77205942 - B3A SINE B2 -2 196 6 6 1159 1159 218 9 0 chr5 75331352 75331563 -77205696 + B3 SINE B2 3 215 -1 6 1159 193 318 113 53 chr5 75332116 75332398 -77204861 + L2b LINE L2 3060 3358 -17 6 1159 247 332 19 0 chr5 75332568 75332659 -77204600 + L2a LINE L2 3259 3407 -19 6 1159 200 312 25 59 chr5 75332669 75332737 -77204522 - MIRb SINE MIR -36 232 170 6 1159 3219 53 18 0 chr5 75332737 75333130 -77204129 + MTB LTR MaLR 1 400 0 6 1159 198 312 25 59 chr5 75333130 75333180 -77204079 - MIRb SINE MIR -99 169 118 6 1159 227 264 0 67 chr5 75333853 75333921 -77203338 + BC1_Mm scRNA scRNA 9 72 -11 6 1159 316 237 158 0 chr5 75333960 75334036 -77203223 + RSINE1 SINE B4 45 132 -33 6 1159 315 0 0 0 chr5 75334046 75334081 -77203178 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1159 21 57 0 0 chr5 75334081 75334116 -77203143 + AT_rich Low_complexity Low_complexity 1 35 0 6 1159 231 318 36 18 chr5 75334470 75334582 -77202677 + MER46C DNA MER2_type 34 147 -191 6 1159 207 133 0 0 chr5 75334585 75334630 -77202629 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 6 1159 184 91 45 0 chr5 75335225 75335269 -77201990 + (TA)n Simple_repeat Simple_repeat 1 46 0 6 1159 1024 147 12 12 chr5 75335294 75335459 -77201800 - B2_Mm2 SINE B2 -30 165 1 6 1159 456 300 182 34 chr5 75336695 75336871 -77200388 + ID_B1 SINE B4 14 215 -9 6 1159 203 138 0 0 chr5 75336871 75336900 -77200359 + (GGA)n Simple_repeat Simple_repeat 1 29 0 6 1159 272 306 50 10 chr5 75337016 75337115 -77200144 + PB1D10 SINE Alu 14 116 -1 6 1159 180 0 0 0 chr5 75337120 75337140 -77200119 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 6 1159 438 250 0 0 chr5 75338092 75338244 -77199015 + (CA)n Simple_repeat Simple_repeat 1 152 0 6 1159 303 188 0 0 chr5 75338251 75338299 -77198960 + HAL1-3A_ME LINE L1 1976 2023 -835 6 1159 527 170 85 0 chr5 75338340 75338434 -77198825 + B1F2 SINE Alu 48 149 0 6 1159 384 215 128 11 chr5 75338653 75338747 -77198512 - B4A SINE B4 -6 286 182 6 1159 380 71 71 0 chr5 75339564 75339648 -77197611 + (CAAA)n Simple_repeat Simple_repeat 1 90 0 6 1159 423 0 0 0 chr5 75340698 75340745 -77196514 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1159 542 239 0 41 chr5 75341028 75341150 -77196109 - PB1D7 SINE Alu -3 117 1 6 1159 329 304 10 71 chr5 75341541 75341640 -77195619 + ID_B1 SINE B4 80 172 -52 6 1159 452 260 10 0 chr5 75341561 75341657 -77195602 + PB1D10 SINE Alu 12 108 -9 6 1159 282 303 39 26 chr5 75342429 75342507 -77194752 + PB1D7 SINE Alu 34 112 -8 6 1159 215 222 22 0 chr5 75342627 75342672 -77194587 + GA-rich Low_complexity Low_complexity 3 48 0 6 1159 1125 79 11 22 chr5 75342672 75342740 -77194519 + (GGGA)n Simple_repeat Simple_repeat 1 68 0 6 1159 1039 120 17 0 chr5 75342740 75342915 -77194344 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 6 1159 1125 79 11 22 chr5 75342915 75343028 -77194231 + (GGGA)n Simple_repeat Simple_repeat 1 111 0 6 1159 1075 111 0 27 chr5 75343028 75343213 -77194046 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 1159 276 368 88 7 chr5 75343296 75343433 -77193826 + MIRc SINE MIR 24 171 -97 6 1159 202 331 75 41 chr5 75343962 75344176 -77193083 + MIR SINE MIR 23 245 -23 6 1159 329 227 0 15 chr5 75344183 75344250 -77193009 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 6 1159 279 0 0 0 chr5 75344446 75344477 -77192782 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1159 1560 11 0 0 chr5 75346307 75346485 -77190774 + (TTC)n Simple_repeat Simple_repeat 1 178 0 6 1159 403 202 19 0 chr5 75346486 75346590 -77190669 + CT-rich Low_complexity Low_complexity 2 107 0 6 1159 3328 190 0 5 chr5 75346596 75347168 -77190091 - Lx2B LINE L1 -2 6998 6430 6 1159 2942 128 65 8 chr5 75348074 75348568 -77188691 - RLTR28 LTR ERVL 0 524 3 6 1159 325 241 35 35 chr5 75348715 75348831 -77188428 + MER57A-int LTR ERV1 5798 5913 -274 6 1159 381 242 62 52 chr5 75348981 75349077 -77188182 - B1F1 SINE Alu -10 139 43 6 1159 350 202 118 20 chr5 75349258 75349362 -77187897 + B1F1 SINE Alu 5 113 -7 6 1159 534 355 104 19 chr5 75349687 75349994 -77187265 + L2a LINE L2 3074 3406 -20 6 1159 204 155 33 33 chr5 75350535 75350627 -77186632 + (CATATA)n Simple_repeat Simple_repeat 1 92 0 6 1159 553 236 71 8 chr5 75350642 75350777 -77186482 + ID_B1 SINE B4 82 217 -7 6 1159 707 213 12 0 chr5 75351116 75351260 -77185999 - B1F SINE Alu 0 149 1 6 1159 253 353 49 67 chr5 75351260 75351275 -77185984 - B4A SINE B4 -61 226 71 6 1159 233 275 8 8 chr5 75351728 75351744 -77185515 + ORR1B1-int LTR MaLR 634 649 -860 6 1159 723 176 24 0 chr5 75351744 75351869 -77185390 + B1_Mur2 SINE Alu 2 129 -20 6 1159 576 184 0 0 chr5 75351869 75352084 -77185175 + GA-rich Low_complexity Low_complexity 1 215 0 6 1159 698 199 52 0 chr5 75352176 75352312 -77184947 - B1_Mur4 SINE Alu -6 144 2 6 1159 256 271 200 0 chr5 75353786 75353856 -77183403 - PB1D10 SINE Alu -33 84 1 6 1159 25 31 0 0 chr5 75354012 75354044 -77183215 + AT_rich Low_complexity Low_complexity 1 32 0 6 1159 183 80 0 0 chr5 75354066 75354091 -77183168 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1159 653 158 100 35 chr5 75355206 75355376 -77181883 - B2_Mm2 SINE B2 -10 185 5 6 1159 384 22 0 0 chr5 75355394 75355439 -77181820 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1159 440 301 27 27 chr5 75355454 75355601 -77181658 - RSINE1 SINE B4 -15 150 4 6 1159 223 91 0 0 chr5 75355671 75355704 -77181555 + ID SINE ID 1 33 -191 6 1159 1101 16 0 0 chr5 75355921 75356048 -77181211 + (TC)n Simple_repeat Simple_repeat 2 128 0 6 1159 693 241 66 24 chr5 75356048 75356214 -77181045 - B3A SINE B2 -24 174 2 6 1159 203 211 0 0 chr5 75356291 75356329 -77180930 - L2a LINE L2 -13 3413 3376 6 1159 231 299 45 0 chr5 75357903 75357970 -77179289 + ID4 SINE ID 5 74 -9 6 1159 319 260 178 10 chr5 75358004 75358105 -77179154 + PB1D9 SINE Alu 1 118 -2 6 1159 362 398 46 29 chr5 75358345 75358692 -77178567 - Arthur1 DNA Tip100 -3571 376 24 6 1159 235 316 0 0 chr5 75359954 75360011 -77177248 + ID4 SINE ID 2 58 -25 6 1159 197 111 0 43 chr5 75360316 75360363 -77176896 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 6 1159 189 0 0 0 chr5 75360371 75360392 -77176867 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 6 1159 336 233 0 0 chr5 75360467 75360527 -77176732 + B3 SINE B2 1 60 -156 6 1159 220 269 56 56 chr5 75360543 75360614 -77176645 - ID2 SINE ID -10 73 3 6 1159 550 195 148 0 chr5 75361029 75361157 -77176102 - B1F SINE Alu -2 147 1 6 1159 369 187 0 0 chr5 75361166 75361241 -77176018 + CT-rich Low_complexity Low_complexity 2 76 0 6 1159 3368 44 2 0 chr5 75361436 75361841 -77175418 + L1Md_F3 LINE L1 6165 6570 -14 6 1159 315 241 0 75 chr5 75362345 75362439 -77174820 - RLTR12A LTR ERVK 0 568 482 6 1159 816 168 0 0 chr5 75363371 75363520 -77173739 + CT-rich Low_complexity Low_complexity 4 152 0 6 1159 671 279 82 0 chr5 75363808 75363991 -77173268 - B3A SINE B2 0 198 1 6 1159 971 217 19 56 chr5 75364025 75364240 -77173019 - B3 SINE B2 -2 214 8 6 1159 24 0 0 0 chr5 75364378 75364402 -77172857 + AT_rich Low_complexity Low_complexity 1 24 0 6 1159 390 333 17 17 chr5 75364648 75364883 -77172376 - L1M5 LINE L1 -1488 4658 4424 6 1159 284 298 110 51 chr5 75364883 75364977 -77172282 + YREP_Mm Unknown Unknown 82 310 -1502 6 1159 683 186 44 15 chr5 75364977 75365113 -77172146 - ID_B1 SINE B4 -7 217 78 6 1159 306 306 45 49 chr5 75365328 75365480 -77171779 + MIRb SINE MIR 104 259 -9 6 1159 366 269 141 16 chr5 75365553 75365674 -77171585 + B3 SINE B2 81 216 0 6 1159 27 29 0 0 chr5 75365676 75365710 -77171549 + AT_rich Low_complexity Low_complexity 1 34 0 6 1159 374 295 77 62 chr5 75365710 75365840 -77171419 + RSINE1 SINE B4 19 150 -15 6 1159 660 209 36 7 chr5 75366027 75366167 -77171092 - B1_Mur1 SINE Alu -5 144 1 6 1159 372 267 66 9 chr5 75366236 75366248 -77171011 + B4 SINE B4 76 93 -199 7 1159 552 185 102 0 chr5 75366248 75366356 -77170903 + B1_Mm SINE Alu 2 120 0 7 1160 331 338 36 29 chr5 75366544 75366684 -77170575 - B1F SINE Alu 0 149 9 7 1160 327 25 0 0 chr5 75366685 75366725 -77170534 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 7 1160 229 256 0 133 chr5 75366747 75366837 -77170422 - PB1D7 SINE Alu -29 91 14 7 1160 191 303 21 53 chr5 75366921 75367015 -77170244 + MIRc SINE MIR 43 133 -135 7 1160 432 0 0 0 chr5 75367030 75367078 -77170181 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1160 704 230 58 0 chr5 75367083 75367222 -77170037 - RSINE1 SINE B4 -12 153 7 7 1160 203 103 0 0 chr5 75367254 75367283 -77169976 + MIR3 SINE MIR 171 199 -9 7 1160 616 238 66 7 chr5 75368468 75368620 -77168639 - MTEa LTR MaLR -8 371 211 7 1160 1120 208 204 77 chr5 75368621 75369110 -77168149 + RLTR20C LTR ERVK 1 551 0 7 1160 653 224 206 0 chr5 75369112 75369277 -77167982 - MTEa LTR MaLR -180 199 1 7 1160 294 29 0 0 chr5 75369355 75369390 -77167869 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 7 1160 235 274 129 26 chr5 75369423 75369539 -77167720 - MER82 DNA MER2_type -174 479 352 7 1160 383 272 73 32 chr5 75369542 75369690 -77167569 + PB1D9 SINE Alu 1 144 -5 7 1160 22 0 0 0 chr5 75369691 75369713 -77167546 + AT_rich Low_complexity Low_complexity 1 22 0 7 1160 410 254 42 28 chr5 75369743 75369885 -77167374 - MER82 DNA MER2_type -435 218 75 7 1160 387 0 0 0 chr5 75371499 75371542 -77165717 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1160 698 251 43 16 chr5 75372032 75372196 -77165063 + B3A SINE B2 3 171 -27 7 1160 414 0 0 0 chr5 75372196 75372242 -77165017 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1160 698 251 43 16 chr5 75372242 75372263 -77164996 + B3A SINE B2 172 193 -5 7 1160 21 82 0 0 chr5 75372386 75372435 -77164824 + AT_rich Low_complexity Low_complexity 1 49 0 7 1160 356 266 27 27 chr5 75372775 75372887 -77164372 + PB1D10 SINE Alu 1 112 -5 7 1160 322 327 37 61 chr5 75372909 75373072 -77164187 + RSINE1 SINE B4 5 163 -2 7 1160 686 174 77 35 chr5 75373131 75373274 -77163985 + B1_Mur1 SINE Alu 1 149 0 7 1160 324 243 86 0 chr5 75373547 75373656 -77163603 - PB1D7 SINE Alu -2 125 1 7 1160 421 380 22 5 chr5 75373778 75374000 -77163259 + MIR SINE MIR 29 254 -8 7 1160 722 98 203 47 chr5 75374011 75374139 -77163120 + B1_Mur3 SINE Alu 1 148 -1 7 1160 333 0 0 0 chr5 75374176 75374213 -77163046 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1160 428 0 19 0 chr5 75374213 75374264 -77162995 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1160 669 255 115 37 chr5 75374981 75375172 -77162087 - B3 SINE B2 -6 210 5 7 1160 398 200 0 48 chr5 75375258 75375342 -77161917 - ID4_ SINE ID -2 81 2 7 1160 1210 161 9 18 chr5 75375364 75375586 -77161673 - URR1A DNA MER1_type 0 226 7 7 1160 227 321 67 67 chr5 75375559 75375739 -77161520 + MTB_Mm LTR MaLR 122 301 -106 7 1160 180 0 0 0 chr5 75376585 75376605 -77160654 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1160 180 254 159 0 chr5 75376605 75376668 -77160591 + L2 LINE L2 2896 2968 -451 7 1160 728 193 97 0 chr5 75377101 75377168 -77160091 + ID SINE ID 1 81 -143 7 1160 311 310 86 5 chr5 75377168 75377290 -77159969 + PB1D10 SINE Alu 1 129 -20 7 1160 310 246 47 85 chr5 75377652 75377781 -77159478 - PB1 SINE Alu -3 124 1 7 1160 198 0 0 0 chr5 75377918 75377940 -77159319 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1160 716 64 0 18 chr5 75378848 75378960 -77158299 + (TCTCTG)n Simple_repeat Simple_repeat 3 112 0 7 1160 737 190 0 0 chr5 75379174 75379290 -77157969 - B3 SINE B2 -100 116 1 7 1160 418 203 13 13 chr5 75379314 75379389 -77157870 - ID4 SINE ID -3 80 6 7 1160 387 0 0 0 chr5 75379637 75379680 -77157579 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1160 631 220 6 6 chr5 75380698 75380872 -77156387 + GA-rich Low_complexity Low_complexity 2 175 0 7 1160 251 266 105 68 chr5 75380904 75381037 -77156222 + L3 LINE CR1 3926 4063 -426 7 1160 253 207 33 49 chr5 75381282 75381343 -77155916 - B1F1 SINE Alu -89 60 1 7 1160 287 253 0 51 chr5 75381351 75381430 -77155829 - PB1D10 SINE Alu -21 96 22 7 1160 23 0 0 0 chr5 75381932 75381955 -77155304 + AT_rich Low_complexity Low_complexity 1 23 0 7 1160 1115 241 134 12 chr5 75382031 75382351 -77154908 - ORR1D2 LTR MaLR -11 359 1 7 1160 1091 322 76 39 chr5 75382351 75382788 -77154471 - MTE-int LTR MaLR -289 1291 838 7 1160 214 162 0 0 chr5 75382834 75382871 -77154388 + (TGG)n Simple_repeat Simple_repeat 1 37 0 7 1160 479 211 13 46 chr5 75382872 75382992 -77154267 - B1_Mur1 SINE Alu 0 149 1 7 1160 405 350 193 28 chr5 75382992 75383372 -77153887 - MTE-int LTR MaLR -770 810 367 7 1160 277 354 12 12 chr5 75383639 75383722 -77153537 + B1F SINE Alu 1 83 -66 7 1160 2784 25 3 60 chr5 75383867 75384214 -77153045 + IAPLTR2b LTR ERVK 1 327 0 7 1160 507 112 16 137 chr5 75384214 75384331 -77152928 + IAPEz-int LTR ERVK 8 110 -6371 7 1160 242 262 49 0 chr5 75384331 75384392 -77152867 + RLTR27 LTR ERVK 212 275 -34 7 1160 231 327 0 0 chr5 75384418 75384473 -77152786 + RLTR27 LTR ERVK 221 275 -34 7 1160 3407 65 1 16 chr5 75384473 75385051 -77152208 + IAPEz-int LTR ERVK 168 662 -5819 7 1160 2595 65 3 3 chr5 75385051 75385393 -77151866 + IAPEz-int LTR ERVK 1359 1700 -4781 7 1160 6088 71 12 7 chr5 75385386 75386211 -77151048 + IAPEz-int LTR ERVK 5651 6479 -2 7 1160 2744 31 3 60 chr5 75386213 75386560 -77150699 + IAPLTR2b LTR ERVK 1 327 0 7 1160 1827 213 34 15 chr5 75387351 75387760 -77149499 + MTD LTR MaLR 2 418 -1 7 1160 4102 203 183 12 chr5 75387761 75387850 -77149409 + MTD-int LTR MaLR 2 95 -1163 7 1160 245 29 0 29 chr5 75387850 75387885 -77149374 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 7 1160 4351 202 183 12 chr5 75387885 75388867 -77148392 + MTD-int LTR MaLR 96 1256 -2 7 1160 2286 179 24 12 chr5 75388869 75389283 -77147976 + MTD LTR MaLR 1 419 0 7 1160 555 202 133 106 chr5 75389320 75389460 -77147799 + B3A SINE B2 1 160 -38 7 1160 396 59 0 0 chr5 75389460 75389511 -77147748 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1160 371 202 133 106 chr5 75389511 75389545 -77147714 + B2_Mm2 SINE B2 158 182 -13 7 1160 309 272 135 10 chr5 75389545 75389649 -77147610 + PB1D10 SINE Alu 1 117 0 7 1160 371 202 133 106 chr5 75389649 75389661 -77147598 + B2_Mm2 SINE B2 183 193 -2 7 1160 180 0 0 0 chr5 75390678 75390698 -77146561 + (TC)n Simple_repeat Simple_repeat 2 21 0 7 1160 354 23 0 0 chr5 75390698 75390741 -77146518 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1160 209 83 28 0 chr5 75391346 75391382 -77145877 + (AGGGGG)n Simple_repeat Simple_repeat 3 39 0 7 1160 428 242 204 0 chr5 75391393 75391525 -77145734 + RSINE1 SINE B4 3 161 -4 7 1160 277 268 28 14 chr5 75391614 75391686 -77145573 - RSINE1 SINE B4 -91 74 2 7 1160 276 288 150 0 chr5 75391689 75391769 -77145490 - 4.5SRNA scRNA scRNA -1 93 2 7 1160 280 269 44 53 chr5 75391830 75391944 -77145315 - RSINE1 SINE B4 -52 113 1 7 1160 407 274 47 9 chr5 75392470 75392577 -77144682 - RSINE1 SINE B4 -52 113 3 7 1160 983 81 58 39 chr5 75392590 75392744 -77144515 - B2_Mm2 SINE B2 -37 158 2 7 1160 243 234 14 86 chr5 75393305 75393375 -77143884 + ID2 SINE ID 2 66 -17 7 1160 482 302 169 6 chr5 75393720 75393880 -77143379 - ID_B1 SINE B4 -38 186 1 7 1160 1297 34 0 7 chr5 75394032 75394179 -77143080 - B1_Mm SINE Alu 0 147 2 7 1160 761 223 85 21 chr5 75394492 75394680 -77142579 - ID_B1 SINE B4 -19 205 6 7 1160 208 237 0 0 chr5 75395736 75395795 -77141464 + T-rich Low_complexity Low_complexity 1 59 0 7 1160 435 236 159 12 chr5 75396402 75396565 -77140694 + RMER5 LTR ERV1 100 286 -248 7 1160 310 292 61 30 chr5 75396727 75396826 -77140433 + PB1D10 SINE Alu 3 104 -13 7 1160 365 314 37 56 chr5 75396912 75397020 -77140239 - B1F1 SINE Alu -43 106 1 7 1160 1150 49 20 40 chr5 75397515 75397663 -77139596 + B1_Mus2 SINE Alu 2 146 -1 7 1160 239 254 14 40 chr5 75397946 75398020 -77139239 - PB1D10 SINE Alu -2 115 44 7 1160 437 275 52 30 chr5 75398265 75398400 -77138859 - B1_Mur1 SINE Alu -11 138 1 7 1160 314 219 16 0 chr5 75399232 75399296 -77137963 + ID_B1 SINE B4 157 221 -3 7 1160 291 281 49 0 chr5 75399367 75399449 -77137810 + B1F1 SINE Alu 13 98 -51 7 1160 495 0 0 0 chr5 75400449 75400504 -77136755 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 7 1160 183 80 0 0 chr5 75402907 75402932 -77134327 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 7 1160 397 226 47 38 chr5 75403142 75403248 -77134011 - PB1D9 SINE Alu 0 120 14 7 1160 258 169 254 0 chr5 75403315 75403386 -77133873 + B1_Mur2 SINE Alu 36 124 -25 7 1160 755 306 74 69 chr5 75403785 75404220 -77133039 + Lx8 LINE L1 7025 7461 -12 7 1160 1117 189 55 5 chr5 75404257 75404459 -77132800 + B3 SINE B2 2 213 -3 7 1160 396 0 0 0 chr5 75404777 75404821 -77132438 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1160 521 340 19 0 chr5 75404837 75404996 -77132263 - B3 SINE B2 -53 163 2 7 1160 960 168 0 0 chr5 75405397 75405534 -77131725 + B1_Mur3 SINE Alu 1 137 -12 7 1160 21 0 0 0 chr5 75405981 75406002 -77131257 + AT_rich Low_complexity Low_complexity 1 21 0 7 1160 375 41 0 0 chr5 75406369 75406418 -77130841 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1160 28 29 0 0 chr5 75407722 75407757 -77129502 + AT_rich Low_complexity Low_complexity 1 35 0 7 1160 204 273 15 0 chr5 75408357 75408423 -77128836 + (TAAG)n Simple_repeat Simple_repeat 4 70 0 7 1160 23 33 0 0 chr5 75409568 75409598 -77127661 + AT_rich Low_complexity Low_complexity 1 30 0 7 1160 531 276 83 52 chr5 75410786 75411015 -77126244 - LFSINE_Vert SINE SINE 0 459 224 7 1160 1319 87 46 0 chr5 75413326 75413499 -77123760 + B2_Mm2 SINE B2 2 182 -13 7 1160 22 0 0 0 chr5 75413711 75413733 -77123526 + AT_rich Low_complexity Low_complexity 1 22 0 7 1160 364 260 93 10 chr5 75413747 75413844 -77123415 + PB1D10 SINE Alu 5 109 -8 7 1160 350 243 102 9 chr5 75414157 75414265 -77122994 - B3 SINE B2 -3 213 96 8 1160 595 179 17 17 chr5 75414262 75414381 -77122878 - MTD LTR MaLR -300 119 1 8 1160 338 0 24 0 chr5 75414520 75414562 -77122697 + (TGG)n Simple_repeat Simple_repeat 2 44 0 8 1160 180 179 0 0 chr5 75414562 75414601 -77122658 + G-rich Low_complexity Low_complexity 5 43 0 8 1160 853 193 109 40 chr5 75414982 75415183 -77122076 - B3A SINE B2 -8 187 1 8 1160 522 46 0 0 chr5 75415365 75415430 -77121829 + (TC)n Simple_repeat Simple_repeat 1 65 0 8 1160 1233 68 0 0 chr5 75415449 75415595 -77121664 - B1_Mus2 SINE Alu 0 147 2 8 1160 324 301 57 117 chr5 75415676 75415750 -77121509 + L1ME1 LINE L1 4631 4702 -1444 8 1160 462 309 120 0 chr5 75415750 75415941 -77121318 + ID_B1 SINE B4 1 214 -10 8 1160 324 301 57 117 chr5 75415941 75416096 -77121163 + L1ME1 LINE L1 4703 4846 -1300 8 1160 602 228 62 0 chr5 75416249 75416378 -77120881 - B1_Mur1 SINE Alu 0 149 14 8 1160 296 345 0 33 chr5 75416527 75416647 -77120612 + PB1D10 SINE Alu 1 116 -1 8 1160 965 192 28 47 chr5 75416673 75416886 -77120373 + B3 SINE B2 3 211 -5 8 1160 354 221 69 103 chr5 75417477 75417593 -77119666 + PB1D9 SINE Alu 2 113 -7 8 1160 325 253 66 13 chr5 75417645 75417721 -77119538 - ID4_ SINE ID -2 81 2 8 1160 883 257 109 67 chr5 75417844 75418319 -77118940 + L1ME1 LINE L1 5487 5981 -198 8 1160 26 30 0 0 chr5 75418416 75418449 -77118810 + AT_rich Low_complexity Low_complexity 1 33 0 8 1160 660 206 72 14 chr5 75418609 75418747 -77118512 - B1_Mur1 SINE Alu -2 147 2 8 1160 260 250 0 0 chr5 75418977 75419037 -77118222 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1160 246 329 14 0 chr5 75419039 75419109 -77118150 - ID4 SINE ID -11 72 2 8 1160 329 318 58 77 chr5 75419111 75419192 -77118067 + Charlie4a DNA MER1_type 1 69 -439 8 1160 1347 107 0 0 chr5 75419192 75419369 -77117890 - B2_Mm2 SINE B2 -17 178 2 8 1160 329 318 58 77 chr5 75419369 75419495 -77117764 + Charlie4a DNA MER1_type 70 204 -304 8 1160 247 283 35 106 chr5 75420389 75420531 -77116728 + Charlie4a DNA MER1_type 377 508 0 8 1160 563 102 11 0 chr5 75420711 75420799 -77116460 + (GGGA)n Simple_repeat Simple_repeat 4 92 0 8 1160 326 317 24 32 chr5 75421065 75421189 -77116070 + RSINE1 SINE B4 28 150 -15 8 1160 31 68 0 0 chr5 75421207 75421266 -77115993 + AT_rich Low_complexity Low_complexity 1 59 0 8 1160 408 181 213 0 chr5 75421480 75421574 -77115685 - B1F SINE Alu -35 114 1 8 1160 450 236 160 30 chr5 75421638 75421769 -77115490 + B1_Mus1 SINE Alu 2 149 0 8 1160 220 214 344 38 chr5 75422077 75422208 -77115051 + B3 SINE B2 1 171 -45 8 1160 264 328 31 39 chr5 75422686 75422816 -77114443 - MIRb SINE MIR -49 219 91 8 1160 22 88 0 0 chr5 75423932 75423989 -77113270 + AT_rich Low_complexity Low_complexity 1 57 0 8 1160 279 212 296 57 chr5 75424831 75425023 -77112236 + B4A SINE B4 50 287 -5 8 1160 624 284 16 74 chr5 75425407 75425500 -77111759 + ID SINE ID 2 83 -141 8 1160 276 303 53 35 chr5 75425500 75425613 -77111646 + PB1D10 SINE Alu 1 115 -2 8 1160 225 0 0 0 chr5 75425735 75425760 -77111499 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1160 799 159 14 71 chr5 75425980 75426181 -77111078 - B3 SINE B2 -2 193 8 8 1160 1044 219 10 0 chr5 75426217 75426418 -77110841 - B3 SINE B2 -7 209 7 8 1160 201 308 45 15 chr5 75426611 75426677 -77110582 + MIRc SINE MIR 3 70 -198 8 1160 594 60 0 0 chr5 75426835 75426918 -77110341 + (TC)n Simple_repeat Simple_repeat 1 83 0 8 1160 243 88 0 0 chr5 75426945 75426979 -77110280 + (CTTA)n Simple_repeat Simple_repeat 2 35 0 8 1160 211 323 0 0 chr5 75426985 75427047 -77110212 - PB1D10 SINE Alu -16 101 40 8 1160 1776 199 82 33 chr5 75427098 75427487 -77109772 + MTC LTR MaLR 14 421 0 8 1160 595 321 0 36 chr5 75427487 75427655 -77109604 - RSINE1 SINE B4 -1 164 3 8 1160 826 200 28 0 chr5 75427671 75427816 -77109443 - B1_Mur3 SINE Alu 0 149 1 8 1160 1442 74 11 0 chr5 75427919 75428095 -77109164 + B2_Mm1t SINE B2 2 179 -14 8 1160 304 141 206 29 chr5 75428143 75428245 -77109014 + B2_Mm2 SINE B2 49 190 -3 8 1160 214 355 45 27 chr5 75428328 75428438 -77108821 + PB1D10 SINE Alu 6 117 0 8 1160 257 361 135 40 chr5 75428511 75428950 -77108309 - L2a LINE L2 -229 3197 2704 8 1160 2079 174 70 22 chr5 75429051 75429451 -77107808 + MTD LTR MaLR 1 419 0 8 1160 212 302 0 0 chr5 75429467 75429520 -77107739 + B3A SINE B2 97 149 -49 8 1160 239 357 10 10 chr5 75429518 75429617 -77107642 + B3A SINE B2 97 195 -3 8 1160 588 282 81 0 chr5 75429841 75430015 -77107244 + Charlie13a DNA Charlie 691 878 -636 8 1160 433 265 10 0 chr5 75430242 75430340 -77106919 - B3 SINE B2 -84 132 34 8 1160 267 256 50 113 chr5 75430616 75430757 -77106502 + MT2B LTR ERVL 156 287 -314 8 1160 480 268 28 4 chr5 75430635 75430769 -77106490 + B1F1 SINE Alu 12 149 0 8 1160 563 131 215 0 chr5 75430851 75430958 -77106301 + B3 SINE B2 1 130 -86 8 1160 220 241 0 17 chr5 75431646 75431705 -77105554 + CT-rich Low_complexity Low_complexity 1 58 0 8 1160 1038 130 20 0 chr5 75432191 75432337 -77104922 + B1_Mur3 SINE Alu 1 149 0 8 1160 295 157 80 0 chr5 75432648 75432718 -77104541 + B1_Mur2 SINE Alu 43 144 -5 8 1160 565 172 8 8 chr5 75432720 75432843 -77104416 + A-rich Low_complexity Low_complexity 4 126 0 8 1160 4008 84 0 2 chr5 75432906 75433433 -77103826 - L1_Mus1 LINE L1 -153 5730 5205 8 1160 7136 50 0 5 chr5 75433433 75434291 -77102968 + L1_Mus1 LINE L1 5714 6567 0 8 1160 276 265 116 10 chr5 75434347 75434482 -77102777 - MIRb SINE MIR -1 261 106 8 1160 212 288 17 0 chr5 75434857 75434916 -77102343 + PB1D7 SINE Alu 41 100 -20 8 1160 276 30 0 0 chr5 75434918 75434951 -77102308 + (CAGAGA)n Simple_repeat Simple_repeat 6 38 0 8 1160 509 225 26 72 chr5 75435429 75435582 -77101677 - RSINE1 SINE B4 -19 146 1 8 1160 566 197 40 24 chr5 75435715 75435840 -77101419 - B1_Mur4 SINE Alu -1 149 23 8 1160 317 200 0 0 chr5 75436101 75436151 -77101108 + RSINE1 SINE B4 3 52 -113 8 1160 234 0 0 0 chr5 75436200 75436226 -77101033 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1160 531 202 0 0 chr5 75436967 75437086 -77100173 + A-rich Low_complexity Low_complexity 4 122 0 8 1160 758 182 44 5 chr5 75437263 75437434 -77099825 - B3 SINE B2 -3 192 2 8 1160 244 111 0 0 chr5 75438492 75438528 -77098731 - ID4_ SINE ID -46 37 2 8 1160 356 193 28 4 chr5 75438615 75438707 -77098552 - B1_Mur3 SINE Alu -47 102 17 8 1160 309 26 0 0 chr5 75439838 75439876 -77097383 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1160 207 100 0 0 chr5 75440461 75440491 -77096768 + (CCG)n Simple_repeat Simple_repeat 2 31 0 8 1160 261 172 0 0 chr5 75440528 75440592 -77096667 + (CCG)n Simple_repeat Simple_repeat 3 66 0 8 1160 233 102 41 0 chr5 75440672 75440721 -77096538 + (CGGG)n Simple_repeat Simple_repeat 4 54 0 8 1160 846 0 0 0 chr5 75441051 75441145 -77096114 + (GTTTG)n Simple_repeat Simple_repeat 2 95 0 8 1160 1256 35 0 14 chr5 75441145 75441283 -77095976 - B1_Mus1 SINE Alu -9 139 2 8 1160 225 0 0 0 chr5 75441364 75441389 -77095870 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 8 1160 206 56 167 0 chr5 75441891 75441927 -77095332 - L2b LINE L2 0 3375 3334 8 1160 393 58 0 0 chr5 75441933 75441985 -77095274 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1160 220 241 81 35 chr5 75442115 75442201 -77095058 + MIRc SINE MIR 27 116 -152 8 1160 249 286 0 31 chr5 75442227 75442292 -77094967 + B4A SINE B4 83 145 -147 8 1160 490 289 0 0 chr5 75443544 75443648 -77093611 - B1F SINE Alu -11 138 35 8 1160 755 187 45 0 chr5 75443687 75443821 -77093438 + B1_Mur4 SINE Alu 1 140 -10 8 1160 207 0 0 0 chr5 75443833 75443856 -77093403 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 8 1160 745 211 187 0 chr5 75443857 75444023 -77093236 - B3 SINE B2 -18 198 2 8 1160 504 316 108 42 chr5 75444124 75444411 -77092848 + MLT1A LTR MaLR 26 331 -43 8 1160 2879 62 67 8 chr5 75445374 75445748 -77091511 - MTA_Mm LTR MaLR 0 396 1 8 1160 585 200 233 12 chr5 75446243 75446415 -77090844 - B3 SINE B2 -6 210 1 8 1160 251 347 82 85 chr5 75447088 75447381 -77089878 - L2c LINE L2 -75 3312 3021 8 1160 552 158 95 13 chr5 75447927 75448051 -77089208 + PB1D9 SINE Alu 1 125 -2 8 1160 365 301 75 20 chr5 75448251 75448397 -77088862 - RSINE1 SINE B4 -8 157 4 8 1160 527 254 30 64 chr5 75448579 75448781 -77088478 - B3A SINE B2 -2 196 2 8 1160 353 355 71 16 chr5 75448786 75448912 -77088347 - ID_B1 SINE B4 -1 223 91 8 1160 435 331 89 18 chr5 75448979 75449148 -77088111 + ID_B1 SINE B4 39 219 -5 8 1160 330 183 0 0 chr5 75449151 75449222 -77088037 + (TGG)n Simple_repeat Simple_repeat 2 72 0 8 1160 585 271 14 0 chr5 75449295 75449439 -77087820 + B1F1 SINE Alu 3 148 -1 8 1160 284 237 37 73 chr5 75449864 75449946 -77087313 + PB1D7 SINE Alu 42 120 0 8 1160 613 228 212 0 chr5 75449949 75450133 -77087126 + ID_B1 SINE B4 1 223 -1 8 1160 342 0 0 0 chr5 75450296 75450334 -77086925 + (TTA)n Simple_repeat Simple_repeat 1 38 0 8 1160 323 207 195 0 chr5 75450743 75450830 -77086429 + RSINE1 SINE B4 2 105 -60 8 1160 693 63 0 0 chr5 75450839 75450934 -77086325 + (CA)n Simple_repeat Simple_repeat 2 96 0 8 1160 766 184 13 13 chr5 75451149 75451298 -77085961 + B1_Mur3 SINE Alu 1 149 0 8 1160 220 293 65 36 chr5 75451375 75451513 -77085746 + MIR SINE MIR 119 260 -2 9 1160 813 245 95 5 chr5 75451692 75451881 -77085378 + B3 SINE B2 7 212 -4 9 1160 368 271 134 8 chr5 75452990 75453109 -77084150 - ID_B1 SINE B4 0 224 91 9 1160 250 233 0 0 chr5 75453177 75453220 -77084039 - tRNA-Lys-AAG tRNA tRNA -33 43 1 9 1160 217 307 0 0 chr5 75453305 75453380 -77083879 + T-rich Low_complexity Low_complexity 1 75 0 9 1160 273 203 31 15 chr5 75453653 75453718 -77083541 + L1MA9 LINE L1 6177 6242 -70 9 1160 603 115 0 11 chr5 75454008 75454096 -77083163 - B1_Mur1 SINE Alu 0 149 63 9 1160 657 219 16 0 chr5 75454261 75454389 -77082870 - RSINE1 SINE B4 -33 132 3 9 1160 225 239 0 21 chr5 75454389 75454433 -77082826 + MLT1A1 LTR MaLR 366 408 0 9 1160 288 286 65 19 chr5 75454522 75454629 -77082630 + MIRb SINE MIR 112 223 -45 9 1160 642 281 19 81 chr5 75456218 75456427 -77080832 - B3A SINE B2 -1 197 2 9 1160 757 252 0 7 chr5 75456475 75456619 -77080640 + RSINE1 SINE B4 2 144 -21 9 1160 415 270 16 73 chr5 75457049 75457173 -77080086 - RSINE1 SINE B4 -6 159 43 9 1160 660 242 38 0 chr5 75457187 75457319 -77079940 - ID_B1 SINE B4 -7 217 81 9 1160 351 283 14 55 chr5 75457189 75457335 -77079924 + YREP_Mm Unknown Unknown 186 325 -1487 9 1160 400 204 50 10 chr5 75457674 75457773 -77079486 + B1F SINE Alu 46 148 -1 9 1160 297 238 24 59 chr5 75457779 75457864 -77079395 + ID2 SINE ID 1 82 -1 9 1160 1280 107 43 0 chr5 75457866 75458053 -77079206 + B2_Mm2 SINE B2 1 195 0 9 1160 385 320 53 33 chr5 75458734 75458873 -77078386 + RSINE1 SINE B4 2 145 -20 9 1160 285 89 0 0 chr5 75458873 75458918 -77078341 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1160 385 320 53 33 chr5 75458918 75458930 -77078329 + RSINE1 SINE B4 146 156 -9 9 1160 294 125 0 0 chr5 75459011 75459059 -77078200 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1160 417 300 108 45 chr5 75459060 75459217 -77078042 - B3A SINE B2 -31 167 1 9 1160 3021 139 95 10 chr5 75460021 75460524 -77076735 - RMER15 LTR ERVL -27 548 3 9 1160 258 106 0 0 chr5 75460533 75460580 -77076679 + (TCTCTG)n Simple_repeat Simple_repeat 6 52 0 9 1160 342 0 0 0 chr5 75460598 75460636 -77076623 + (GA)n Simple_repeat Simple_repeat 1 38 0 9 1160 1793 186 192 20 chr5 75461117 75461562 -77075697 - RMER4B LTR ERVK 0 585 65 9 1160 225 0 0 0 chr5 75461562 75461587 -77075672 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1160 1793 186 192 20 chr5 75461587 75461640 -77075619 - RMER4B LTR ERVK -521 64 2 9 1160 791 225 53 5 chr5 75461646 75461834 -77075425 + B3 SINE B2 1 197 -19 9 1160 373 321 28 0 chr5 75461902 75462008 -77075251 + B1F SINE Alu 1 109 -40 9 1160 434 261 26 0 chr5 75461924 75462039 -77075220 + ID_B1 SINE B4 104 221 -3 9 1160 433 222 8 77 chr5 75462045 75462162 -77075097 + B3 SINE B2 1 109 -107 9 1160 214 295 16 0 chr5 75462190 75462251 -77075008 + MIRc SINE MIR 203 264 -4 9 1160 234 0 0 0 chr5 75462517 75462543 -77074716 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1160 330 261 57 0 chr5 75463766 75463854 -77073405 + PB1D7 SINE Alu 22 114 -6 9 1160 233 262 88 53 chr5 75464317 75464430 -77072829 + MIRb SINE MIR 144 260 -8 9 1160 195 275 57 14 chr5 75464454 75464524 -77072735 + MIRc SINE MIR 42 114 -154 9 1160 189 233 145 32 chr5 75465420 75465482 -77071777 + L2a LINE L2 3344 3412 -14 9 1160 431 177 229 0 chr5 75465717 75465813 -77071446 - PB1D9 SINE Alu -1 119 2 9 1160 194 81 0 26 chr5 75465881 75465919 -77071340 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 9 1160 209 318 16 0 chr5 75466028 75466091 -77071168 + GA-rich Low_complexity Low_complexity 4 67 0 9 1160 188 208 20 40 chr5 75466431 75466481 -77070778 + L2a LINE L2 3359 3407 -19 9 1160 213 183 0 77 chr5 75467361 75467426 -77069833 + G-rich Low_complexity Low_complexity 5 64 0 9 1160 213 217 0 0 chr5 75467489 75467535 -77069724 + T-rich Low_complexity Low_complexity 4 49 0 9 1160 625 229 100 37 chr5 75469743 75469933 -77067326 + B3 SINE B2 3 204 -12 9 1160 202 216 0 56 chr5 75471439 75471493 -77065766 + C-rich Low_complexity Low_complexity 6 56 0 9 1160 226 68 68 0 chr5 75472160 75472204 -77065055 + (CACCAT)n Simple_repeat Simple_repeat 1 47 0 9 1160 306 115 0 0 chr5 75472221 75472273 -77064986 + (CGG)n Simple_repeat Simple_repeat 1 52 0 9 1160 36 62 0 0 chr5 75473851 75473915 -77063344 + AT_rich Low_complexity Low_complexity 1 64 0 9 1160 356 238 6 0 chr5 75474247 75474342 -77062917 - PB1D9 SINE Alu 0 120 23 9 1160 683 59 10 0 chr5 75475121 75475222 -77062037 + (GA)n Simple_repeat Simple_repeat 2 103 0 9 1160 465 50 0 0 chr5 75477125 75477185 -77060074 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 1160 280 247 47 12 chr5 75477380 75477466 -77059793 - ID_B1 SINE B4 -134 90 2 9 1160 22 35 0 0 chr5 75477877 75477906 -77059353 + AT_rich Low_complexity Low_complexity 1 29 0 9 1160 182 182 45 15 chr5 75478938 75479005 -77058254 + GA-rich Low_complexity Low_complexity 3 71 0 9 1160 423 0 0 0 chr5 75479064 75479111 -77058148 + (GA)n Simple_repeat Simple_repeat 2 48 0 9 1160 240 261 28 28 chr5 75479606 75479677 -77057582 - B1F SINE Alu -2 147 77 9 1160 266 106 0 21 chr5 75479799 75479847 -77057412 + (TCC)n Simple_repeat Simple_repeat 1 47 0 9 1160 274 138 25 12 chr5 75479844 75479925 -77057334 + (TCTG)n Simple_repeat Simple_repeat 3 84 0 9 1160 348 287 18 9 chr5 75479931 75480040 -77057219 + CT-rich Low_complexity Low_complexity 1 110 0 9 1160 264 229 0 62 chr5 75482465 75482530 -77054729 - PB1D10 SINE Alu -9 108 48 9 1160 336 140 0 0 chr5 75482486 75482536 -77054723 - ID_B1 SINE B4 -52 172 123 9 1160 239 286 0 16 chr5 75482562 75482626 -77054633 - tRNA-Ala-GCY_ tRNA tRNA -9 66 4 9 1160 423 0 0 0 chr5 75482659 75482706 -77054553 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 9 1160 850 157 8 0 chr5 75482707 75482841 -77054418 - B1_Mus1 SINE Alu -12 136 2 9 1160 357 207 324 0 chr5 75482876 75482987 -77054272 - RSINE1 SINE B4 -17 148 2 9 1160 283 198 146 98 chr5 75483126 75483249 -77054010 - PB1D10 SINE Alu -29 88 22 9 1160 272 207 15 0 chr5 75483322 75483457 -77053802 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 9 1160 552 298 57 28 chr5 75483504 75483715 -77053544 + Lx8 LINE L1 7056 7272 -201 9 1160 350 129 0 16 chr5 75483753 75483816 -77053443 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 9 1160 371 201 39 7 chr5 75484088 75484243 -77053016 + (TAGA)n Simple_repeat Simple_repeat 1 160 0 9 1160 437 275 65 34 chr5 75484411 75484590 -77052669 - PB1D9 SINE Alu 0 320 1 9 1160 622 227 39 0 chr5 75484803 75484931 -77052328 + B1_Mur1 SINE Alu 1 133 -16 9 1160 1079 119 6 0 chr5 75484936 75485112 -77052147 + (GGGGA)n Simple_repeat Simple_repeat 1 177 0 9 1160 351 0 0 0 chr5 75485115 75485154 -77052105 + (GGAAA)n Simple_repeat Simple_repeat 1 39 0 9 1160 971 223 11 5 chr5 75485160 75485349 -77051910 + B3 SINE B2 1 190 -26 9 1160 225 0 0 0 chr5 75485349 75485374 -77051885 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 9 1160 355 252 73 18 chr5 75485407 75485516 -77051743 + MLT1A0 LTR MaLR 35 149 -216 9 1160 551 236 16 16 chr5 75485534 75485659 -77051600 + RSINE1 SINE B4 8 132 -33 9 1160 705 161 0 0 chr5 75485996 75486164 -77051095 + GA-rich Low_complexity Low_complexity 1 168 0 9 1160 518 250 23 30 chr5 75486210 75486342 -77050917 - B1_Mur1 SINE Alu -18 131 1 9 1160 243 0 0 0 chr5 75486374 75486401 -77050858 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 9 1160 872 141 28 43 chr5 75486401 75486542 -77050717 - B1_Mur4 SINE Alu -9 141 3 9 1160 299 169 0 14 chr5 75486548 75486620 -77050639 + (TTA)n Simple_repeat Simple_repeat 2 72 0 9 1160 842 53 103 37 chr5 75486622 75486758 -77050501 - B1_Mur4 SINE Alu 0 150 6 9 1160 763 251 21 57 chr5 75486768 75486962 -77050297 - B3A SINE B2 -1 197 11 9 1160 207 0 0 0 chr5 75486997 75487020 -77050239 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9 1160 1200 75 0 0 chr5 75487034 75487181 -77050078 - B1_Mus2 SINE Alu 0 147 1 9 1160 684 266 71 30 chr5 75487202 75487437 -77049822 + MER2 DNA MER2_type 56 296 -49 9 1160 303 267 0 0 chr5 75487447 75487507 -77049752 - ID4 SINE ID -14 69 10 9 1160 450 0 0 0 chr5 75487585 75487635 -77049624 + (GA)n Simple_repeat Simple_repeat 1 50 0 9 1160 412 263 17 26 chr5 75488046 75488163 -77049096 + PB1D9 SINE Alu 5 120 0 9 1160 1178 48 0 58 chr5 75488163 75488299 -77048960 + B1_Mm SINE Alu 1 136 -11 9 1160 198 0 0 0 chr5 75488299 75488321 -77048938 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 1160 1178 48 0 58 chr5 75488321 75488340 -77048919 + B1_Mm SINE Alu 137 147 0 9 1160 212 114 0 43 chr5 75488341 75488387 -77048872 + A-rich Low_complexity Low_complexity 2 45 0 9 1160 2174 74 3 0 chr5 75488444 75488727 -77048532 + ORR1A2 LTR MaLR 1 284 -43 9 1160 782 130 8 0 chr5 75488789 75488920 -77048339 + (TTC)n Simple_repeat Simple_repeat 3 134 0 9 1160 375 43 0 0 chr5 75489010 75489056 -77048203 + ORR1A2 LTR MaLR 273 318 -8 9 1160 244 311 47 28 chr5 75489714 75489820 -77047439 + MLT1A0 LTR MaLR 22 129 -279 9 1160 285 382 18 74 chr5 75489873 75490102 -77047157 + ORR1E LTR MaLR 98 313 -46 9 1160 534 257 0 27 chr5 75490175 75490287 -77046972 - PB1D10 SINE Alu -8 109 1 9 1160 219 167 229 0 chr5 75490465 75490513 -77046746 - PB1D7 SINE Alu -61 59 1 9 1160 769 179 7 7 chr5 75490976 75491111 -77046148 + B1_Mur1 SINE Alu 1 135 -14 1 1160 587 81 0 11 chr5 75491112 75491199 -77046060 + (CAGA)n Simple_repeat Simple_repeat 1 86 0 1 1160 21 0 0 0 chr5 75491251 75491272 -77045987 + AT_rich Low_complexity Low_complexity 1 21 0 1 1160 2426 144 120 11 chr5 75492385 75492861 -77044398 - RLTR11A LTR ERVK 0 528 1 1 1160 1172 200 0 19 chr5 75492898 75493107 -77044152 + B3 SINE B2 7 211 -5 1 1160 557 217 0 28 chr5 75493143 75493272 -77043987 + PB1D7 SINE Alu 4 119 -1 1 1160 252 143 0 0 chr5 75493601 75493643 -77043616 + (CAA)n Simple_repeat Simple_repeat 3 44 0 1 1160 332 229 16 0 chr5 75493661 75493722 -77043537 + tRNA-Ala-GCY_ tRNA tRNA 1 62 -13 1 1160 738 87 0 0 chr5 75493724 75493827 -77043432 + (CA)n Simple_repeat Simple_repeat 2 104 0 1 1160 605 289 47 77 chr5 75493832 75493987 -77043272 + MLT1A0 LTR MaLR 103 260 -114 9 1160 766 189 78 28 chr5 75493987 75494167 -77043092 - B2_Mm2 SINE B2 -5 190 2 1 1160 605 267 35 79 chr5 75494167 75494279 -77042980 + MLT1A0 LTR MaLR 250 358 -7 9 1160 478 326 52 47 chr5 75494644 75494689 -77042570 + MLT2B1 LTR ERVL 40 80 -440 1 1160 3577 33 33 5 chr5 75494689 75495113 -77042146 + RLTR10C LTR ERVK 1 436 0 1 1160 478 307 120 65 chr5 75495113 75495404 -77041855 + MLT2B1 LTR ERVL 78 538 -16 1 1160 364 232 82 118 chr5 75495757 75495938 -77041321 + MTE2b LTR MaLR 1 178 -201 1 1160 1909 129 180 3 chr5 75496064 75496398 -77040861 + ORR1B1 LTR MaLR 1 393 -1 1 1160 391 269 37 9 chr5 75496429 75496538 -77040721 - B1F SINE Alu -1 148 37 1 1160 1073 105 0 41 chr5 75496714 75496883 -77040376 + B2_Mm2 SINE B2 20 181 -14 1 1160 459 0 0 0 chr5 75496883 75496934 -77040325 + (GAAA)n Simple_repeat Simple_repeat 1 51 0 1 1160 261 0 0 0 chr5 75496934 75496962 -77040297 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1 1160 820 10 29 0 chr5 75496962 75497065 -77040194 + (GGAAA)n Simple_repeat Simple_repeat 5 111 0 1 2 1643 159 93 13 chr5 75497438 75497738 -77039521 + MTC LTR MaLR 1 324 -97 1 1161 333 264 0 22 chr5 75497770 75497859 -77039400 + MLT1A1 LTR MaLR 319 405 -3 1 1161 811 39 0 19 chr5 75497925 75498030 -77039229 + B1_Mus2 SINE Alu 44 146 -1 1 1161 432 0 0 0 chr5 75498058 75498106 -77039153 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1161 252 287 207 0 chr5 75498141 75498228 -77039031 + PB1D10 SINE Alu 6 110 -7 1 1161 269 277 0 15 chr5 75498245 75498311 -77038948 + GA-rich Low_complexity Low_complexity 1 65 0 1 1161 696 274 14 0 chr5 75498545 75498691 -77038568 - B1_Mur1 SINE Alu -1 148 1 1 1161 334 272 51 142 chr5 75498691 75498785 -77038474 - MT2B LTR ERVL -445 156 79 1 1161 1026 189 44 227 chr5 75498826 75499279 -77037980 + ORR1D1 LTR MaLR 2 371 -3 1 1161 516 246 108 23 chr5 75499392 75499521 -77037738 + B1_Mur1 SINE Alu 9 148 -1 1 1161 876 232 14 28 chr5 75499547 75499760 -77037499 + B3 SINE B2 1 210 -6 1 1161 732 242 33 11 chr5 75499793 75499977 -77037282 + B3A SINE B2 11 198 0 1 1161 239 265 139 35 chr5 75500486 75500572 -77036687 + MTD LTR MaLR 12 106 -313 1 1161 453 172 23 11 chr5 75500574 75500662 -77036597 - PB1D9 SINE Alu 0 120 32 2 1161 312 151 10 165 chr5 75500599 75500702 -77036557 - RLTR25B LTR ERVK -536 492 406 3 1161 295 294 132 16 chr5 75500637 75500758 -77036501 - MLT1A1 LTR MaLR -137 271 137 4 1161 786 277 73 0 chr5 75500766 75500972 -77036287 + ID_B1 SINE B4 3 223 -1 5 1161 254 50 0 24 chr5 75500973 75501014 -77036245 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 6 1161 423 0 0 0 chr5 75501072 75501119 -77036140 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 7 1161 333 151 12 50 chr5 75501119 75501199 -77036060 - B2_Mm2 SINE B2 -89 127 47 8 1161 835 92 254 0 chr5 75501250 75501392 -77035867 - B2_Mm1t SINE B2 -14 179 2 9 1161 1066 165 119 10 chr5 75501442 75501644 -77035615 - URR1A DNA MER1_type -2 224 1 1 1161 227 326 115 10 chr5 75501899 75501919 -77035340 + B4A SINE B4 67 96 -196 1 1161 366 214 143 0 chr5 75501919 75502003 -77035256 + B1_Mur3 SINE Alu 2 97 -52 1 1161 288 280 140 0 chr5 75502060 75502153 -77035106 + B3A SINE B2 93 198 0 1 1161 828 186 0 7 chr5 75502154 75502295 -77034964 + B1_Mur2 SINE Alu 1 140 -9 1 1161 207 0 0 0 chr5 75502295 75502318 -77034941 + (CCA)n Simple_repeat Simple_repeat 1 23 0 1 1161 616 275 8 0 chr5 75502324 75502455 -77034804 + ID_B1 SINE B4 91 222 -2 1 1161 307 134 0 68 chr5 75502923 75503011 -77034248 + CT-rich Low_complexity Low_complexity 2 83 0 1 1161 459 0 0 0 chr5 75503011 75503062 -77034197 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1161 264 324 98 92 chr5 75503106 75503135 -77034124 + B4A SINE B4 56 219 -73 1 1161 403 264 82 37 chr5 75503135 75503269 -77033990 + B1F2 SINE Alu 2 141 -8 2 1161 216 0 0 0 chr5 75503279 75503303 -77033956 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 2 1161 429 270 41 57 chr5 75503335 75503457 -77033802 + ID_B1 SINE B4 94 213 -11 2 1161 593 323 80 8 chr5 75503470 75503689 -77033570 - ORSL-2b DNA Tip100 -157 351 122 2 1161 1694 26 5 0 chr5 75503689 75503881 -77033378 - B2_Mm1t SINE B2 0 193 1 2 1161 593 323 80 8 chr5 75503881 75503923 -77033336 - ORSL-2b DNA Tip100 -387 121 72 2 1161 466 311 140 0 chr5 75504413 75504577 -77032682 + ID_B1 SINE B4 1 187 -37 2 1161 288 111 0 0 chr5 75505764 75505809 -77031450 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 2 1161 216 243 47 13 chr5 75505813 75505963 -77031296 + (TA)n Simple_repeat Simple_repeat 2 156 0 2 1161 355 309 68 48 chr5 75506520 75506666 -77030593 - B1_Mur1 SINE Alu 0 149 1 2 1161 684 290 56 67 chr5 75506711 75506833 -77030426 - L1M2 LINE L1 -1221 4922 4804 2 1161 417 20 0 0 chr5 75506833 75506883 -77030376 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 3 1161 684 290 56 67 chr5 75506883 75506941 -77030318 - L1M2 LINE L1 -1340 4803 4758 2 1161 300 53 0 0 chr5 75506941 75506979 -77030280 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 3 1161 684 290 56 67 chr5 75506979 75507263 -77029996 - L1M2 LINE L1 -1386 4757 4462 2 1161 237 65 0 0 chr5 75507271 75507302 -77029957 + (TTG)n Simple_repeat Simple_repeat 3 33 0 3 1161 352 271 82 0 chr5 75507302 75507387 -77029872 - ID_B1 SINE B4 -52 172 81 3 1161 346 242 31 52 chr5 75507388 75507484 -77029775 - B1F SINE Alu 0 149 56 3 1161 1534 226 72 14 chr5 75507712 75508057 -77029202 - ORR1D1 LTR MaLR -2 372 8 3 1161 296 260 0 61 chr5 75508057 75508139 -77029120 - B4 SINE B4 -212 80 4 3 1161 965 92 0 7 chr5 75508147 75508290 -77028969 + (TCTCC)n Simple_repeat Simple_repeat 3 144 0 3 1161 848 65 56 8 chr5 75508297 75508432 -77028827 - B1_Mus1 SINE Alu 0 148 2 3 1161 335 283 62 93 chr5 75508487 75508713 -77028546 - L1M2 LINE L1 -1670 4473 4255 2 1161 23 0 0 0 chr5 75509653 75509676 -77027583 + AT_rich Low_complexity Low_complexity 1 23 0 3 1161 723 218 19 72 chr5 75509696 75509904 -77027355 - B3A SINE B2 0 198 2 4 1161 482 243 45 9 chr5 75509974 75510086 -77027173 + PB1D9 SINE Alu 5 120 0 4 1161 614 269 33 76 chr5 75510130 75510275 -77026984 - B3A SINE B2 0 216 81 4 1161 2283 153 68 5 chr5 75510275 75510670 -77026589 - MTC LTR MaLR 0 421 2 4 1161 614 267 26 69 chr5 75510670 75510749 -77026510 - B3A SINE B2 -118 80 2 4 1161 24 0 0 0 chr5 75510755 75510779 -77026480 + AT_rich Low_complexity Low_complexity 1 24 0 4 1161 428 204 84 19 chr5 75510785 75510923 -77026336 - B3 SINE B2 -10 185 46 4 1161 509 245 19 0 chr5 75511150 75511256 -77026003 - ID_B1 SINE B4 -36 188 81 4 1161 294 305 38 0 chr5 75511279 75511410 -77025849 - B1F2 SINE Alu -11 138 3 4 1161 379 293 71 50 chr5 75511721 75511861 -77025398 + RSINE1 SINE B4 2 144 -21 4 1161 219 36 0 0 chr5 75511872 75511900 -77025359 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1161 429 289 42 7 chr5 75512272 75512415 -77024844 + RSINE1 SINE B4 3 150 -15 5 1161 548 258 40 105 chr5 75512612 75512963 -77024296 + RMER10A LTR ERVL 79 429 -13 5 1161 374 310 76 45 chr5 75513133 75513265 -77023994 - MIR3 SINE MIR -60 148 13 5 1161 253 215 30 15 chr5 75513287 75513353 -77023906 - PB1D10 SINE Alu -5 112 46 5 1161 275 264 241 0 chr5 75513529 75513616 -77023643 - B1_Mus2 SINE Alu -2 118 11 5 1161 1098 83 14 7 chr5 75513616 75513762 -77023497 + B1_Mus1 SINE Alu 1 147 -1 5 1161 243 42 61 20 chr5 75513763 75513812 -77023447 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 5 1161 1516 48 0 11 chr5 75513829 75514018 -77023241 + B2_Mm2 SINE B2 2 188 -7 5 1161 438 269 3 58 chr5 75514073 75514194 -77023065 + ID_B1 SINE B4 82 191 -33 5 1161 659 167 64 1 chr5 75514194 75514321 -77022938 + B1_Mur2 SINE Alu 1 133 -16 5 1161 351 0 0 0 chr5 75514366 75514405 -77022854 + (TC)n Simple_repeat Simple_repeat 1 39 0 6 1161 239 307 33 33 chr5 75514627 75514718 -77022541 - PB1D9 SINE Alu -2 118 28 6 1161 732 150 0 0 chr5 75515414 75515534 -77021725 + PB1D9 SINE Alu 1 120 0 6 1161 566 168 123 9 chr5 75515539 75515653 -77021606 + B1F2 SINE Alu 10 136 -13 6 1161 446 202 32 43 chr5 75515942 75516035 -77021224 + B1F SINE Alu 15 106 -43 6 1161 761 223 101 29 chr5 75516053 75516261 -77020998 + ID_B1 SINE B4 1 223 -1 6 1161 445 196 32 11 chr5 75516321 75516414 -77020845 - MTE2a LTR MaLR -6 373 279 6 1161 294 226 153 12 chr5 75516413 75516498 -77020761 - MTE2a LTR MaLR -282 97 1 6 1161 255 217 35 46 chr5 75516720 75516807 -77020452 + (TATATG)n Simple_repeat Simple_repeat 6 91 0 6 1161 338 278 82 50 chr5 75516888 75517067 -77020192 - B3A SINE B2 -1 215 26 6 1161 278 140 246 0 chr5 75517070 75517127 -77020132 - B1_Mur1 SINE Alu -20 129 59 6 1161 607 229 17 8 chr5 75517185 75517197 -77020062 - B1_Mur4 SINE Alu -1 149 138 7 1161 546 29 0 0 chr5 75517197 75517265 -77019994 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 7 1161 607 229 17 8 chr5 75517265 75517371 -77019888 - B1_Mur4 SINE Alu -13 137 30 7 1161 220 271 158 85 chr5 75518262 75518283 -77018976 - B2_Mm2 SINE B2 -9 186 121 7 1161 562 283 72 0 chr5 75518283 75518308 -77018951 - RSINE1 SINE B4 0 165 139 7 1161 404 51 17 0 chr5 75518308 75518367 -77018892 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1161 220 271 158 85 chr5 75518367 75518485 -77018774 - B2_Mm2 SINE B2 -75 120 10 7 1161 911 151 14 0 chr5 75518804 75518943 -77018316 + B1_Mur4 SINE Alu 1 141 -9 7 1161 225 0 0 0 chr5 75518943 75518968 -77018291 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1161 397 263 81 0 chr5 75518974 75519073 -77018186 + PB1D10 SINE Alu 3 109 -8 7 1161 2402 66 27 59 chr5 75519247 75519585 -77017674 + ORR1A2 LTR MaLR 1 327 0 7 1161 1092 63 14 0 chr5 75519668 75519811 -77017448 + B1_Mm SINE Alu 2 146 -1 7 1161 436 248 43 83 chr5 75520792 75520997 -77016262 + ORR1D1 LTR MaLR 7 209 -165 8 1161 212 176 77 19 chr5 75520998 75521050 -77016209 + B1F2 SINE Alu 3 57 -92 8 1161 734 90 0 0 chr5 75521118 75521218 -77016041 + B1_Mur4 SINE Alu 43 142 -8 8 1161 1317 89 22 0 chr5 75521254 75521433 -77015826 + B2_Mm2 SINE B2 1 183 -12 8 1161 306 20 0 56 chr5 75521502 75521556 -77015703 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 8 1161 672 169 56 49 chr5 75521578 75521721 -77015538 + B1_Mur1 SINE Alu 5 148 -1 8 1161 211 216 0 0 chr5 75521721 75521758 -77015501 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 8 1161 582 178 124 175 chr5 75521758 75521894 -77015365 + ORR1D1 LTR MaLR 196 329 -45 8 1161 1984 151 66 22 chr5 75521894 75522260 -77014999 - ORR1C2 LTR MaLR -2 382 1 8 1161 582 178 124 175 chr5 75522260 75522300 -77014959 + ORR1D1 LTR MaLR 330 363 -11 8 1161 1138 225 105 25 chr5 75522300 75522614 -77014645 + MTD LTR MaLR 81 419 0 8 1161 355 189 77 87 chr5 75522837 75522928 -77014331 + RSINE1 SINE B4 59 149 -16 8 1161 345 109 0 0 chr5 75522928 75522983 -77014276 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 9 1161 355 189 77 87 chr5 75522983 75522995 -77014264 + RSINE1 SINE B4 150 161 -4 8 1161 395 255 113 0 chr5 75523014 75523120 -77014139 + PB1D9 SINE Alu 2 119 -1 9 1161 22 0 0 0 chr5 75523299 75523321 -77013938 + AT_rich Low_complexity Low_complexity 1 22 0 9 1161 422 262 7 122 chr5 75523811 75523950 -77013309 - ID_B1 SINE B4 -2 222 100 9 1161 499 266 14 34 chr5 75524177 75524325 -77012934 - ID_B1 SINE B4 -1 223 79 9 1161 533 302 18 18 chr5 75524375 75524540 -77012719 - RSINE1 SINE B4 0 165 1 9 1161 568 239 0 35 chr5 75524547 75524660 -77012599 - ID_B1 SINE B4 -4 220 112 9 1161 1143 180 0 83 chr5 75524890 75525132 -77012127 - URR1A DNA MER1_type -4 222 1 9 1161 323 292 29 3 chr5 75525413 75525515 -77011744 - PB1D7 SINE Alu -17 100 2 9 1161 267 103 0 0 chr5 75526062 75526101 -77011158 + (TCC)n Simple_repeat Simple_repeat 3 41 0 9 1161 1162 42 0 7 chr5 75526132 75526275 -77010984 - B1_Mm SINE Alu -5 142 1 1 1161 313 250 174 0 chr5 75526346 75526438 -77010821 + PB1D10 SINE Alu 8 115 -2 1 1161 20602 62 0 0 chr5 75526438 75529033 -77008226 + L1Md_F2 LINE L1 2992 5586 -297 1 1161 8264 44 1 0 chr5 75529033 75530012 -77007247 + L1Md_F2 LINE L1 5587 6566 -16 1 1161 207 0 0 0 chr5 75530012 75530035 -77007224 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1161 261 0 0 0 chr5 75530112 75530141 -77007118 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 1161 526 244 35 0 chr5 75530237 75530352 -77006907 + PB1D7 SINE Alu 1 119 -1 1 1161 331 279 67 0 chr5 75530395 75530499 -77006760 - PB1D10 SINE Alu -6 111 1 1 1161 236 143 0 152 chr5 75531054 75531120 -77006139 + B1_Mus2 SINE Alu 4 59 -88 1 1161 221 159 0 0 chr5 75531120 75531225 -77006034 + GA-rich Low_complexity Low_complexity 1 105 0 1 1161 485 228 30 0 chr5 75531225 75531326 -77005933 + B1_Mm SINE Alu 31 134 -13 1 1161 835 134 45 0 chr5 75531393 75531527 -77005732 - B1_Mur2 SINE Alu -1 148 9 1 1161 1016 188 54 29 chr5 75531537 75531703 -77005556 + Lx5 LINE L1 6804 6969 -81 1 1161 288 0 0 0 chr5 75531703 75531735 -77005524 + (GGGTG)n Simple_repeat Simple_repeat 1 32 0 1 1161 1016 188 54 29 chr5 75531735 75531809 -77005450 + Lx5 LINE L1 6970 7049 -1 1 1161 252 59 0 0 chr5 75531851 75531885 -77005374 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1161 301 167 122 49 chr5 75532258 75532340 -77004919 - L1M4b LINE L1 -5083 2251 2164 1 1161 376 250 86 29 chr5 75532509 75532649 -77004610 + L1MCa LINE L1 1815 1962 -4546 1 1161 465 129 21 11 chr5 75532653 75532747 -77004512 + (TA)n Simple_repeat Simple_repeat 2 96 0 1 1161 284 44 44 0 chr5 75532748 75532793 -77004466 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 1 1161 452 188 231 0 chr5 75532975 75533092 -77004167 + B1_Mus2 SINE Alu 4 147 0 1 1161 1375 86 27 0 chr5 75533373 75533560 -77003699 + B2_Mm1t SINE B2 1 192 -1 1 1161 541 250 138 5 chr5 75533566 75533755 -77003504 + ID_B1 SINE B4 2 215 -9 1 1161 213 65 0 0 chr5 75534136 75534167 -77003092 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1161 219 129 270 16 chr5 75534962 75535025 -77002234 - PB1D10 SINE Alu -17 100 22 1 1161 517 147 15 30 chr5 75535043 75535164 -77002095 + CT-rich Low_complexity Low_complexity 13 131 0 1 1161 1044 78 0 43 chr5 75535164 75535352 -77001907 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1 1161 517 147 15 30 chr5 75535352 75535363 -77001896 + polypyrimidine Low_complexity Low_complexity 2 12 0 1 1161 400 258 20 30 chr5 75535366 75535466 -77001793 - PB1D7 SINE Alu -19 101 3 1 1161 180 0 0 0 chr5 75536199 75536219 -77001040 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1 1161 335 331 38 19 chr5 75536629 75536789 -77000470 - RSINE1 SINE B4 0 165 3 1 1161 773 0 0 0 chr5 75536955 75537037 -77000222 - L1Md_Gf LINE L1 -5801 721 640 1 1161 1029 71 65 0 chr5 75537035 75537153 -77000106 + L1Md_T LINE L1 5903 6020 -562 1 1161 1740 33 102 0 chr5 75537153 75537368 -76999891 + L1Md_A LINE L1 6346 6582 0 1 1161 1029 119 42 56 chr5 75537368 75537426 -76999833 + L1Md_T LINE L1 6015 6065 -517 1 1161 252 0 0 0 chr5 75538062 75538090 -76999169 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1161 1144 109 115 0 chr5 75538422 75538596 -76998663 - B2_Mm2 SINE B2 0 195 2 1 1161 651 245 28 0 chr5 75538622 75538765 -76998494 - B1_Mur1 SINE Alu -1 148 2 1 1161 186 71 0 0 chr5 75538776 75538804 -76998455 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1161 186 43 0 0 chr5 75538812 75538835 -76998424 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1161 189 0 0 0 chr5 75540107 75540128 -76997131 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1161 477 0 0 0 chr5 75540144 75540197 -76997062 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1161 187 346 108 65 chr5 75540304 75540536 -76996723 + L2b LINE L2 3120 3361 -14 1 1161 699 12 0 0 chr5 75541025 75541105 -76996154 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1161 1137 128 0 0 chr5 75541258 75541438 -76995821 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 1 1161 341 70 18 0 chr5 75541773 75541830 -76995429 + (TTTTTG)n Simple_repeat Simple_repeat 2 59 0 1 1161 1067 38 0 15 chr5 75541836 75541971 -76995288 - B1_Mm SINE Alu 0 147 15 1 1161 972 205 32 55 chr5 75542925 75543142 -76994117 + B3 SINE B2 1 212 -4 1 1161 243 0 0 0 chr5 75543468 75543495 -76993764 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1161 1141 51 0 0 chr5 75543497 75543635 -76993624 - B1_Mus1 SINE Alu -10 138 1 1 1161 596 38 13 0 chr5 75543657 75543736 -76993523 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 1 1161 326 284 23 0 chr5 75543737 75543825 -76993434 - ID_B1 SINE B4 -1 223 134 1 1161 300 299 114 9 chr5 75543825 75543856 -76993403 - B1F SINE Alu -2 147 17 1 1161 243 0 0 0 chr5 75544303 75544330 -76992929 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1 1161 297 0 0 0 chr5 75546690 75546723 -76990536 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1161 453 19 0 0 chr5 75547139 75547193 -76990066 + (TGG)n Simple_repeat Simple_repeat 1 54 0 1 1161 243 125 0 0 chr5 75548694 75548734 -76988525 + (A)n Simple_repeat Simple_repeat 1 40 0 1 1161 207 156 0 0 chr5 75549376 75549408 -76987851 + (CGG)n Simple_repeat Simple_repeat 1 32 0 1 1161 351 0 0 0 chr5 75550738 75550777 -76986482 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1161 819 93 0 0 chr5 75551326 75551444 -76985815 + (GGA)n Simple_repeat Simple_repeat 2 119 0 1 1161 331 272 0 16 chr5 75552077 75552118 -76985141 + polypurine Low_complexity Low_complexity 2 41 0 1 1161 432 37 0 0 chr5 75552118 75552172 -76985087 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1161 331 272 0 16 chr5 75552172 75552257 -76985002 + GA-rich Low_complexity Low_complexity 42 126 0 1 1161 1347 72 0 0 chr5 75553367 75553547 -76983712 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1161 251 190 0 17 chr5 75553554 75553613 -76983646 + CT-rich Low_complexity Low_complexity 3 60 0 1 1161 382 321 155 16 chr5 75553622 75553809 -76983450 - B3 SINE B2 -3 213 1 1 1161 423 0 0 0 chr5 75553923 75553970 -76983289 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1161 263 116 23 0 chr5 75554852 75554895 -76982364 + PB1D10 SINE Alu 46 89 -28 1 1161 1149 66 0 0 chr5 75555162 75555299 -76981960 + B1_Mm SINE Alu 1 137 -10 1 1161 413 50 17 0 chr5 75555299 75555359 -76981900 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 1 1161 211 77 0 0 chr5 75555359 75555385 -76981874 + B2_Mm2 SINE B2 29 54 -141 1 1161 1482 34 28 0 chr5 75555779 75555955 -76981304 + B2_Mm2 SINE B2 1 181 -14 1 1161 742 250 40 0 chr5 75556063 75556215 -76981044 - RSINE1 SINE B4 -6 159 2 1 1161 547 257 88 0 chr5 75557273 75557409 -76979850 + B4A SINE B4 143 290 -2 1 1161 399 100 0 0 chr5 75557424 75557494 -76979765 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1161 527 239 9 9 chr5 75558641 75558755 -76978504 + PB1D10 SINE Alu 4 117 0 1 1161 223 208 19 0 chr5 75558765 75558818 -76978441 + ID4 SINE ID 2 55 -28 1 1161 624 26 84 17 chr5 75560024 75560143 -76977116 + (TCTG)n Simple_repeat Simple_repeat 2 128 0 1 1161 469 294 95 26 chr5 75560143 75560332 -76976927 - B4A SINE B4 -89 203 2 1 1161 480 245 0 11 chr5 75560370 75560465 -76976794 - B1F SINE Alu -40 109 16 1 1161 349 256 101 0 chr5 75560482 75560586 -76976673 - PB1D7 SINE Alu 0 120 11 1 1161 505 233 0 19 chr5 75560612 75560717 -76976542 - PB1 SINE Alu 0 127 25 1 1161 628 265 42 38 chr5 75560791 75560974 -76976285 + B3 SINE B2 1 186 -30 1 1161 324 0 0 0 chr5 75560974 75561010 -76976249 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1161 628 265 42 38 chr5 75561010 75561038 -76976221 + B3 SINE B2 187 213 -3 1 1161 283 254 0 0 chr5 75561165 75561228 -76976031 + ID2 SINE ID 4 66 -17 1 1161 190 261 125 42 chr5 75561369 75561465 -76975794 - L2b LINE L2 -28 3347 3244 1 1161 355 245 87 78 chr5 75562218 75562333 -76974926 - B4A SINE B4 -176 116 1 1 1161 1424 63 15 40 chr5 75563336 75563535 -76973724 + B2_Mm2 SINE B2 2 195 0 1 1161 241 303 13 0 chr5 75564073 75564149 -76973110 + MIR3 SINE MIR 93 169 -39 1 1161 379 200 13 0 chr5 75564379 75564454 -76972805 - L1MA6 LINE L1 -191 6109 6034 1 1161 248 77 0 25 chr5 75564618 75564658 -76972601 + (TA)n Simple_repeat Simple_repeat 2 40 0 1 1161 288 0 0 0 chr5 75564707 75564739 -76972520 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1161 814 92 17 10 chr5 75564744 75564876 -76972383 - B2_Mm2 SINE B2 -57 159 17 1 1161 588 264 6 43 chr5 75565003 75565165 -76972094 - RSINE1 SINE B4 -1 164 9 1 1161 21 0 0 0 chr5 75565346 75565367 -76971892 + AT_rich Low_complexity Low_complexity 1 21 0 1 1161 603 246 42 0 chr5 75565666 75565808 -76971451 - B1F SINE Alu 0 149 2 1 1161 401 0 20 0 chr5 75565919 75565968 -76971291 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1161 258 362 60 0 chr5 75566143 75566259 -76971000 - Lx8 LINE L1 -201 7272 7150 1 1161 301 289 41 0 chr5 75566290 75566387 -76970872 - L1MC1 LINE L1 -9 6324 6224 1 1161 491 217 83 19 chr5 75567627 75567735 -76969524 - PB1D7 SINE Alu 0 120 6 1 1161 1108 64 21 0 chr5 75567755 75567896 -76969363 - B1_Mm SINE Alu -3 144 1 1 1161 378 195 12 35 chr5 75567958 75568043 -76969216 - PB1D10 SINE Alu -6 111 29 1 1161 217 196 0 21 chr5 75568640 75568687 -76968572 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1 1161 230 321 10 167 chr5 75568730 75568928 -76968331 - B4 SINE B4 -71 221 55 2 1161 765 163 13 33 chr5 75569002 75569154 -76968105 + B1_Mur4 SINE Alu 2 150 0 2 1161 381 217 150 55 chr5 75569756 75569883 -76967376 - B1F SINE Alu -10 139 1 2 1161 34 79 0 0 chr5 75570137 75570213 -76967046 + AT_rich Low_complexity Low_complexity 1 76 0 2 1161 210 171 0 0 chr5 75570294 75570329 -76966930 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2 1161 1169 202 0 0 chr5 75570364 75570557 -76966702 + B3 SINE B2 1 193 -23 2 1161 315 0 0 0 chr5 75571448 75571483 -76965776 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2 1161 306 312 0 114 chr5 75571499 75571622 -76965637 - PB1D10 SINE Alu -8 109 1 2 1161 186 43 0 0 chr5 75571626 75571649 -76965610 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2 1161 366 23 0 0 chr5 75571655 75571698 -76965561 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 1161 1115 86 53 0 chr5 75571698 75571850 -76965409 - B2_Mm1a SINE B2 -33 160 1 2 1161 629 278 11 61 chr5 75571924 75572104 -76965155 - B3A SINE B2 -45 171 1 2 1161 390 125 0 0 chr5 75573234 75573314 -76963945 + (CAGAGA)n Simple_repeat Simple_repeat 3 82 0 2 1161 269 311 77 23 chr5 75574136 75574189 -76963070 + B4 SINE B4 32 164 -128 2 1161 484 242 0 0 chr5 75574189 75574280 -76962979 + PB1D10 SINE Alu 1 91 -26 2 1161 352 321 148 46 chr5 75574302 75574498 -76962761 + ID_B1 SINE B4 1 216 -8 2 1161 268 193 53 0 chr5 75574449 75574506 -76962753 + B1F SINE Alu 90 149 0 2 1161 1289 74 28 11 chr5 75574508 75574685 -76962574 - B2_Mm2 SINE B2 -14 181 2 2 1161 347 256 165 47 chr5 75574887 75574915 -76962344 + B1F SINE Alu 6 99 -50 2 1161 445 241 11 0 chr5 75574915 75575002 -76962257 + ID_B1 SINE B4 129 216 -8 2 1161 347 256 165 47 chr5 75575002 75575014 -76962245 + B1F SINE Alu 100 147 -2 2 1161 396 0 0 0 chr5 75575041 75575085 -76962174 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1161 225 0 0 0 chr5 75575169 75575194 -76962065 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 2 1161 1188 251 3 39 chr5 75576531 75576813 -76960446 + B4A SINE B4 1 272 -20 2 1161 285 51 0 0 chr5 75576837 75576876 -76960383 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1161 183 42 0 0 chr5 75577194 75577218 -76960041 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1161 1123 72 0 0 chr5 75577218 75577356 -76959903 - B1_Mus2 SINE Alu -9 138 1 2 1161 1252 57 0 0 chr5 75578398 75578555 -76958704 + B2_Mm2 SINE B2 2 158 -37 2 1161 270 0 0 0 chr5 75578556 75578586 -76958673 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2 1161 189 0 0 0 chr5 75579444 75579465 -76957794 + (TAA)n Simple_repeat Simple_repeat 1 21 0 2 1161 339 289 131 18 chr5 75579473 75579695 -76957564 + Charlie18a DNA MER1_type 87 333 -9 2 1161 267 211 0 34 chr5 75579719 75579778 -76957481 - L4 LINE RTE -660 1369 1313 2 1161 474 18 0 0 chr5 75580682 75580737 -76956522 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1161 239 224 118 0 chr5 75580916 75580992 -76956267 - MER46C DNA MER2_type -10 328 244 2 1161 309 284 0 0 chr5 75581284 75581365 -76955894 - ID4 SINE ID -2 81 1 2 1161 226 341 142 25 chr5 75582197 75582403 -76954856 + MIR SINE MIR 15 236 -26 2 1161 802 194 123 5 chr5 75582416 75582603 -76954656 + B3 SINE B2 5 213 -3 2 1161 740 296 98 19 chr5 75583468 75583733 -76953526 + B4 SINE B4 1 286 -6 2 1161 210 194 90 75 chr5 75584282 75584349 -76952910 - MIR3 SINE MIR -41 167 100 2 1161 243 0 0 0 chr5 75586267 75586294 -76950965 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1161 868 147 0 42 chr5 75586294 75586436 -76950823 - B1_Mur3 SINE Alu -9 140 5 2 1161 421 276 124 120 chr5 75586568 75586933 -76950326 - L1M3 LINE L1 -815 5485 5148 2 1161 180 0 0 0 chr5 75586933 75586953 -76950306 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1161 522 172 233 0 chr5 75586956 75587072 -76950187 - B1F2 SINE Alu -4 145 3 2 1161 596 216 104 0 chr5 75587079 75587213 -76950046 - B1_Mur1 SINE Alu -1 148 1 2 1161 421 268 120 144 chr5 75587213 75587243 -76950016 - L1M3 LINE L1 -1001 5142 5126 2 1161 537 200 73 0 chr5 75587243 75587353 -76949906 - PB1D9 SINE Alu 0 120 3 2 1161 589 267 175 42 chr5 75587353 75587850 -76949409 - L1M3 LINE L1 -1003 5137 4576 2 1161 213 358 0 18 chr5 75587908 75587961 -76949298 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 2 1161 853 209 36 20 chr5 75587961 75588009 -76949250 - B3A SINE B2 0 198 149 2 1161 441 0 0 0 chr5 75588009 75588058 -76949201 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1161 246 32 0 0 chr5 75588061 75588092 -76949167 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1161 853 209 36 20 chr5 75588092 75588234 -76949025 - B3A SINE B2 -50 148 7 2 1161 213 358 0 18 chr5 75588234 75588291 -76948968 + (TATATG)n Simple_repeat Simple_repeat 5 55 0 2 1161 1330 88 22 0 chr5 75588919 75589101 -76948158 - B2_Mm1t SINE B2 -7 186 1 2 1161 523 0 13 63 chr5 75589114 75589193 -76948066 - L1Md_F2 LINE L1 -12 6570 6496 2 1161 345 24 0 0 chr5 75589733 75589775 -76947484 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1161 237 295 25 37 chr5 75589804 75589885 -76947374 + MER110A LTR ERV1 186 265 -203 2 1161 23 33 0 0 chr5 75590150 75590180 -76947079 + AT_rich Low_complexity Low_complexity 1 30 0 2 1161 924 261 45 11 chr5 75590190 75590457 -76946802 - Lx9 LINE L1 -131 7513 7238 2 1161 902 158 14 0 chr5 75593470 75593616 -76943643 - B1_Mur2 SINE Alu 0 149 2 2 1161 458 296 0 9 chr5 75594315 75594431 -76942828 - PB1D10 SINE Alu -2 115 1 2 1161 404 91 15 0 chr5 75594433 75594499 -76942760 + (TCC)n Simple_repeat Simple_repeat 3 69 0 2 1161 366 275 18 18 chr5 75594499 75594610 -76942649 - L1MC1 LINE L1 0 6333 6223 2 1161 188 64 62 21 chr5 75597056 75597104 -76940155 + (GTGTG)n Simple_repeat Simple_repeat 1 50 0 2 1161 325 307 60 56 chr5 75597104 75597265 -76939994 - B3A SINE B2 -13 203 45 2 1161 563 239 9 26 chr5 75597237 75597353 -76939906 - B3A SINE B2 -82 116 3 2 1161 3935 111 58 2 chr5 75597361 75597930 -76939329 - MT2B LTR ERVL 0 601 1 2 1161 771 209 7 7 chr5 75597967 75598116 -76939143 - B1_Mur3 SINE Alu 0 149 1 2 1161 612 344 59 16 chr5 75598132 75598386 -76938873 - MER2 DNA MER2_type -2 343 79 2 1161 385 178 51 169 chr5 75598568 75598687 -76938572 - PB1D9 SINE Alu 0 120 11 2 1161 204 40 0 0 chr5 75598707 75598732 -76938527 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1161 457 295 79 5 chr5 75598825 75599039 -76938220 - L1MA4 LINE L1 -368 5932 5703 2 1161 980 144 0 14 chr5 75599060 75599208 -76938051 - B1_Mur3 SINE Alu -2 147 2 2 1161 444 225 14 65 chr5 75599342 75599480 -76937779 - B1F1 SINE Alu -18 131 1 2 1161 376 295 66 85 chr5 75599480 75599774 -76937485 - L1M5 LINE L1 -2584 3562 3256 2 1161 417 288 17 0 chr5 75599774 75599892 -76937367 - PB1D7 SINE Alu 0 120 1 2 1161 376 294 56 87 chr5 75599892 75600187 -76937072 - L1M5 LINE L1 -2889 3257 2962 2 1161 247 292 90 74 chr5 75600509 75600536 -76936723 - PB1 SINE Alu -3 124 1 2 1161 428 255 0 11 chr5 75600536 75600631 -76936628 - ID_B1 SINE B4 -49 175 82 2 1161 394 232 4 51 chr5 75600673 75600778 -76936481 - B1_Mur1 SINE Alu 0 149 21 2 1161 249 255 41 31 chr5 75600855 75600952 -76936307 - Lx8 LINE L1 -2 7471 7374 2 1161 237 114 23 0 chr5 75601042 75601086 -76936173 - L1ME2z LINE L1 -8 6436 6392 2 1161 812 171 203 0 chr5 75601130 75601317 -76935942 - URR1B DNA MER1_type 0 225 1 2 1161 186 43 0 0 chr5 75602697 75602720 -76934539 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1161 475 248 32 49 chr5 75602752 75602875 -76934384 + B1F1 SINE Alu 21 141 -8 2 1161 264 250 255 31 chr5 75602878 75603039 -76934220 - B3A SINE B2 -1 197 1 2 1161 929 253 40 9 chr5 75603137 75603364 -76933895 - ORR1E LTR MaLR -110 249 16 2 1161 190 75 0 70 chr5 75603772 75603815 -76933444 + (TCTCTG)n Simple_repeat Simple_repeat 4 43 0 2 1161 4344 188 6 216 chr5 75603870 75605218 -76932041 - RMER1B Other Other 0 1066 2 2 1161 2249 171 42 12 chr5 75605279 75605688 -76931571 - MTC LTR MaLR 0 421 1 2 1161 441 0 0 0 chr5 75606568 75606617 -76930642 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1161 225 0 0 0 chr5 75606617 75606641 -76930618 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 1161 195 139 0 0 chr5 75607410 75607446 -76929813 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 2 1161 1380 109 0 5 chr5 75607446 75607640 -76929619 - B2_Mm2 SINE B2 -1 194 2 2 1161 1951 128 3 99 chr5 75607888 75608243 -76929016 + ORR1A4 LTR MaLR 1 321 -8 2 1161 283 357 119 73 chr5 75608481 75608592 -76928667 + L2c LINE L2 2653 2753 -666 2 1161 594 0 0 0 chr5 75608592 75608658 -76928601 + (TTTC)n Simple_repeat Simple_repeat 4 69 0 2 1161 1085 83 21 0 chr5 75608659 75608804 -76928455 - B1_Mus1 SINE Alu 0 148 1 2 1161 283 336 85 64 chr5 75608804 75609112 -76928147 + L2c LINE L2 2754 3092 -295 2 1161 374 250 0 0 chr5 75610090 75610158 -76927101 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 2 1161 333 0 0 0 chr5 75610245 75610282 -76926977 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1161 231 36 0 0 chr5 75611296 75611324 -76925935 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1161 723 71 0 0 chr5 75611506 75611604 -76925655 + (GGAA)n Simple_repeat Simple_repeat 4 101 0 2 1161 225 390 90 29 chr5 75611864 75612141 -76925118 - MamGypLTR2 LTR Gypsy -539 650 357 2 1161 512 311 83 55 chr5 75612373 75612662 -76924597 + MLT1E2 LTR MaLR 329 625 -2 2 1161 386 316 154 0 chr5 75613426 75613562 -76923697 - RSINE1 SINE B4 -7 158 2 3 1161 438 69 0 0 chr5 75613646 75613704 -76923555 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 3 1161 191 236 0 14 chr5 75613691 75613764 -76923495 + CT-rich Low_complexity Low_complexity 3 74 0 3 1161 1767 193 54 14 chr5 75614538 75614906 -76922353 - MTD LTR MaLR -17 402 20 3 1161 400 301 133 20 chr5 75615231 75615585 -76921674 - L1MB8 LINE L1 -11 6167 5757 3 1161 937 177 172 0 chr5 75615585 75615777 -76921482 + URR1B DNA MER1_type 1 225 0 3 1161 616 170 0 10 chr5 75616237 75616338 -76920921 + G-rich Low_complexity Low_complexity 6 105 0 3 1161 310 305 137 0 chr5 75616727 75616858 -76920401 - B1F1 SINE Alu 0 149 1 3 1161 288 278 118 76 chr5 75617510 75617654 -76919605 - MER5B DNA MER1_type -28 150 1 3 1161 827 272 46 32 chr5 75617671 75618017 -76919242 + RLTR15 LTR ERVK 3 353 -6 3 1161 487 214 111 0 chr5 75618535 75618652 -76918607 - B1_Mur2 SINE Alu -17 132 3 3 1161 903 80 0 0 chr5 75619694 75619819 -76917440 + (CA)n Simple_repeat Simple_repeat 1 125 0 3 1161 551 259 55 20 chr5 75620417 75620563 -76916696 - Tigger5 DNA MER2_type -1 2405 2255 3 1161 313 257 194 0 chr5 75620582 75620726 -76916533 - Lx8 LINE L1 -2 7471 7300 3 1161 820 243 6 0 chr5 75620740 75620921 -76916338 - Lx8 LINE L1 -333 7140 6959 3 1161 311 310 26 9 chr5 75620927 75621041 -76916218 - Tigger5 DNA MER2_type -137 2269 2154 3 1161 243 282 12 0 chr5 75621711 75621796 -76915463 + CT-rich Low_complexity Low_complexity 2 87 0 3 1161 315 0 0 0 chr5 75622544 75622579 -76914680 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1161 369 0 0 0 chr5 75622579 75622619 -76914640 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1161 952 257 120 4 chr5 75622628 75622870 -76914389 - MLT2B1 LTR ERVL -248 272 3 3 1161 268 248 0 17 chr5 75623018 75623039 -76914220 + polypyrimidine Low_complexity Low_complexity 99 119 0 3 1161 578 14 14 0 chr5 75623039 75623110 -76914149 + (CTA)n Simple_repeat Simple_repeat 2 73 0 3 1161 268 248 0 17 chr5 75623110 75623207 -76914052 + CT-rich Low_complexity Low_complexity 3 98 0 3 1161 284 163 0 0 chr5 75623231 75623280 -76913979 - PB1D9 SINE Alu 0 120 72 3 1161 873 107 0 0 chr5 75623976 75624116 -76913143 + (TG)n Simple_repeat Simple_repeat 2 141 0 3 1161 237 378 97 19 chr5 75624119 75624273 -76912986 - MLT1G3 LTR MaLR -52 527 362 3 1161 336 322 61 82 chr5 75624318 75624514 -76912745 - MLT1G3 LTR MaLR -332 263 72 3 1161 864 41 0 0 chr5 75624528 75624626 -76912633 + L1Md_F2 LINE L1 5489 5586 -297 3 1161 8181 49 3 3 chr5 75624626 75625622 -76911637 + L1Md_F2 LINE L1 5587 6582 0 3 1161 285 29 0 0 chr5 75626294 75626328 -76910931 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1161 513 200 58 58 chr5 75626329 75626459 -76910800 - RSINE1 SINE B4 -34 131 5 3 1161 6880 154 29 37 chr5 75626488 75627407 -76909852 + Lx6 LINE L1 4631 5573 -307 3 1161 904 148 7 7 chr5 75627407 75627550 -76909709 + B1_Mus1 SINE Alu 5 147 -1 3 145 6880 176 22 33 chr5 75627550 75628595 -76908664 + Lx6 LINE L1 5574 6578 -882 3 1162 1386 123 27 9 chr5 75628595 75628816 -76908443 + URR1B DNA MER1_type 1 225 0 3 1162 5952 187 18 30 chr5 75628816 75628980 -76908279 + Lx6 LINE L1 6579 6737 -723 3 1162 2120 194 109 52 chr5 75629055 75629144 -76908115 + MT2A LTR ERVL 1 88 -445 3 1162 2513 96 12 38 chr5 75629144 75629543 -76907716 - Lx LINE L1 0 6654 6266 3 1162 2120 194 109 52 chr5 75629543 75629957 -76907302 + MT2A LTR ERVL 89 533 0 3 1162 359 265 19 48 chr5 75630062 75630165 -76907094 - MLT1A1 LTR MaLR -2 406 307 3 1162 321 311 14 96 chr5 75630282 75630428 -76906831 - MLT1A1 LTR MaLR -274 134 1 3 1162 204 320 134 0 chr5 75630599 75630696 -76906563 - MIRc SINE MIR -40 228 119 3 1162 321 26 0 0 chr5 75630910 75630948 -76906311 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1162 1708 198 48 35 chr5 75630977 75631348 -76905911 - ORR1C2 LTR MaLR -8 376 1 3 1162 340 240 132 19 chr5 75631414 75631520 -76905739 - PB1D7 SINE Alu 0 120 3 3 1162 1499 251 52 16 chr5 75631592 75631957 -76905302 - MTEa LTR MaLR 0 379 2 3 1162 376 278 40 30 chr5 75632033 75632133 -76905126 + RSINE1 SINE B4 8 108 -57 3 1162 551 288 67 64 chr5 75632655 75632952 -76904307 - MER33 DNA MER1_type 0 324 27 3 1162 318 295 8 11 chr5 75633488 75633581 -76903678 + MTEb LTR MaLR 279 367 -3 3 1162 276 263 53 0 chr5 75633955 75634031 -76903228 - ID4 SINE ID 0 83 4 3 1162 1957 191 15 49 chr5 75635705 75636112 -76901147 - RMER1C Other Other 0 1342 950 3 1162 2042 134 53 12 chr5 75636481 75636821 -76900438 + ORR1B1 LTR MaLR 41 394 0 3 1162 231 393 99 18 chr5 75637015 75637186 -76900073 + MLT1H LTR MaLR 106 290 -259 3 1162 322 297 13 29 chr5 75637260 75637384 -76899875 + MTEa LTR MaLR 217 348 -31 3 1162 549 225 81 52 chr5 75637397 75637533 -76899726 - B3 SINE B2 0 216 77 3 1162 274 288 25 12 chr5 75638198 75638279 -76898980 - ID4_ SINE ID -1 82 1 3 1162 594 224 35 7 chr5 75638287 75638431 -76898828 - B1F SINE Alu -1 148 1 3 1162 333 0 0 0 chr5 75638540 75638577 -76898682 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1162 441 0 0 0 chr5 75638884 75638933 -76898326 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1162 1296 333 59 19 chr5 75639318 75640150 -76897109 - L1MA4A LINE L1 -365 5938 5041 3 1162 693 225 15 8 chr5 75640286 75640416 -76896843 - B1F SINE Alu -10 139 9 3 1162 1264 156 70 18 chr5 75640570 75640799 -76896460 - Lx9 LINE L1 -468 7176 6936 3 1162 2405 224 21 93 chr5 75640793 75640825 -76896434 - L1_Rod LINE L1 -8 5839 5808 3 1162 2526 74 3 3 chr5 75640825 75641151 -76896108 + ORR1A2 LTR MaLR 1 326 -1 3 1162 2405 224 21 93 chr5 75641151 75641841 -76895418 - L1_Rod LINE L1 -40 5807 5169 3 1162 1258 188 165 27 chr5 75641848 75642181 -76895078 + Lx9 LINE L1 7196 7574 -70 3 1162 341 110 39 29 chr5 75642181 75642284 -76894975 + (TA)n Simple_repeat Simple_repeat 2 105 0 3 1162 297 0 0 0 chr5 75643012 75643045 -76894214 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 3 1162 787 295 33 5 chr5 75644060 75644271 -76892988 - ID_B1 SINE B4 -1 223 7 3 1162 293 289 90 14 chr5 75644422 75644566 -76892693 - MIRc SINE MIR -62 206 52 3 1162 232 174 22 0 chr5 75645040 75645086 -76892173 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1162 460 304 127 27 chr5 75645137 75645357 -76891902 - B4A SINE B4 -49 243 2 3 1162 351 0 0 0 chr5 75645491 75645530 -76891729 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1162 982 130 20 0 chr5 75645773 75645919 -76891340 - B3 SINE B2 0 216 68 3 1162 241 236 18 0 chr5 75646072 75646127 -76891132 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1162 2174 112 22 0 chr5 75646566 75646877 -76890382 - ORR1A3 LTR MaLR -8 318 1 3 1162 192 152 0 0 chr5 75647457 75647490 -76889769 + CT-rich Low_complexity Low_complexity 1 33 0 3 1162 359 367 13 39 chr5 75647508 75647661 -76889598 + MLT1E1A LTR MaLR 19 167 -393 3 1162 243 232 73 136 chr5 75647653 75647763 -76889496 - MT2B2 LTR ERVL -307 277 175 3 1162 548 160 32 11 chr5 75647678 75647773 -76889486 - B1F1 SINE Alu -52 97 1 3 1162 785 253 60 36 chr5 75647785 75648117 -76889142 + MLT1E1A LTR MaLR 314 668 -12 3 1162 241 276 229 52 chr5 75648487 75648640 -76888619 - LTR33 LTR ERVL -331 184 5 3 1162 1145 65 0 0 chr5 75648981 75649120 -76888139 + B1_Mus1 SINE Alu 1 139 -9 3 1162 230 239 0 0 chr5 75649309 75649355 -76887904 - LTR88b LTR Gypsy? -31 806 761 3 1162 2470 178 50 26 chr5 75649995 75650492 -76886767 + RMER20A LTR ERVK 1 509 -7 3 1162 426 256 25 33 chr5 75650736 75650857 -76886402 - PB1D7 SINE Alu 0 120 1 3 1162 284 271 20 0 chr5 75651476 75651581 -76885678 - ID4 SINE ID -23 129 20 3 1162 416 150 12 0 chr5 75652112 75652192 -76885067 + CT-rich Low_complexity Low_complexity 4 84 0 3 1162 272 333 31 41 chr5 75652254 75652351 -76884908 + MLT1A1 LTR MaLR 65 160 -214 3 1162 331 232 69 29 chr5 75652408 75652510 -76884749 + MLT1A1 LTR MaLR 281 386 -22 3 1162 839 241 96 85 chr5 75652893 75653246 -76884013 + ORR1E LTR MaLR 3 359 0 3 1162 272 195 105 84 chr5 75653964 75654059 -76883200 + MT2B LTR ERVL 168 264 -337 3 1162 616 151 43 26 chr5 75653981 75654097 -76883162 + B1_Mur2 SINE Alu 32 149 0 3 1162 381 305 126 30 chr5 75654360 75654630 -76882629 - L2 LINE L2 -374 3045 2750 3 1162 821 123 58 7 chr5 75654653 75654792 -76882467 + B1_Mur4 SINE Alu 5 150 0 3 1162 414 0 0 0 chr5 75654803 75654849 -76882410 + (CCAA)n Simple_repeat Simple_repeat 1 46 0 3 1162 200 128 26 0 chr5 75654863 75654902 -76882357 + A-rich Low_complexity Low_complexity 5 44 0 3 1162 2935 142 21 35 chr5 75655182 75655699 -76881560 + RLTR28 LTR ERVL 1 510 -14 3 1162 294 271 122 0 chr5 75655746 75655853 -76881406 - L2 LINE L2 -800 2619 2500 3 1162 683 302 47 14 chr5 75656821 75657036 -76880223 - ID_B1 SINE B4 0 224 3 3 1162 1086 192 75 19 chr5 75657075 75657287 -76879972 + URR1B DNA MER1_type 2 225 0 3 1162 405 327 121 52 chr5 75657288 75657520 -76879739 + ORR1D2 LTR MaLR 85 332 -38 3 1162 189 0 0 0 chr5 75657530 75657551 -76879708 + (CAA)n Simple_repeat Simple_repeat 2 22 0 3 1162 326 329 0 0 chr5 75657571 75657656 -76879603 - PB1D10 SINE Alu -27 90 6 3 1162 243 152 0 0 chr5 75657745 75657791 -76879468 + GA-rich Low_complexity Low_complexity 2 47 0 3 1162 992 230 14 0 chr5 75657822 75658035 -76879224 + B3 SINE B2 1 216 0 3 1162 434 226 200 35 chr5 75658155 75658325 -76878934 - B3 SINE B2 -14 202 5 3 1162 492 18 0 0 chr5 75658335 75658392 -76878867 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 3 1162 459 0 0 0 chr5 75658403 75658454 -76878805 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1162 618 187 159 7 chr5 75658460 75658611 -76878648 - B3 SINE B2 -42 174 1 3 1162 21 36 0 0 chr5 75658708 75658736 -76878523 + AT_rich Low_complexity Low_complexity 1 28 0 3 1162 287 250 26 26 chr5 75659137 75659215 -76878044 + ID4_ SINE ID 2 79 -4 3 1162 355 260 173 34 chr5 75659416 75659595 -76877664 + MER3 DNA MER1_type 1 204 -5 4 1162 765 252 64 10 chr5 75660942 75661146 -76876113 + B3 SINE B2 2 216 0 4 1162 1053 312 65 100 chr5 75661186 75661313 -76875946 + MT2B LTR ERVL 2 112 -489 4 1162 672 102 0 0 chr5 75661313 75661411 -76875848 + (TCTA)n Simple_repeat Simple_repeat 2 99 0 4 1162 1053 312 65 100 chr5 75661411 75661903 -76875356 + MT2B LTR ERVL 113 599 -2 4 1162 27 0 0 0 chr5 75663438 75663465 -76873794 + AT_rich Low_complexity Low_complexity 1 27 0 4 1162 513 310 16 0 chr5 75663486 75663615 -76873644 - RSINE1 SINE B4 -33 132 2 4 1162 440 59 15 0 chr5 75665015 75665083 -76872176 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 1162 307 223 26 88 chr5 75665612 75665657 -76871602 + L1MA8 LINE L1 6049 6093 -198 4 1162 2494 144 45 0 chr5 75665657 75666060 -76871199 - MTC LTR MaLR 0 421 1 4 1162 307 223 26 88 chr5 75666060 75666127 -76871132 + L1MA8 LINE L1 6094 6154 -137 4 1162 414 0 0 0 chr5 75666129 75666175 -76871084 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1162 22 0 0 0 chr5 75667044 75667066 -76870193 + AT_rich Low_complexity Low_complexity 1 22 0 4 1162 486 254 0 0 chr5 75667607 75667749 -76869510 + (CA)n Simple_repeat Simple_repeat 2 143 0 4 1162 3800 83 47 22 chr5 75668144 75668699 -76868560 - L1Md_F2 LINE L1 0 6582 6014 4 1162 25 0 0 0 chr5 75668699 75668724 -76868535 + AT_rich Low_complexity Low_complexity 1 25 0 4 1162 312 295 0 25 chr5 75668790 75668870 -76868389 + ID2 SINE ID 2 79 -4 4 1162 550 285 100 39 chr5 75669063 75669373 -76867886 - MLT1A LTR MaLR -45 329 1 4 1162 480 321 6 0 chr5 75670119 75670278 -76866981 + MLT1B LTR MaLR 12 171 -219 4 1162 268 247 76 33 chr5 75670421 75670513 -76866746 + B1F2 SINE Alu 1 96 -53 4 1162 788 268 140 12 chr5 75670534 75670791 -76866468 + B4A SINE B4 1 290 -2 4 1162 720 223 106 5 chr5 75670834 75671032 -76866227 + MLT1B LTR MaLR 161 378 -12 4 1162 225 215 15 44 chr5 75671459 75671527 -76865732 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 4 1162 1037 306 44 9 chr5 75671542 75671882 -76865377 + MER21B LTR ERV1 76 427 -436 4 1162 408 213 35 44 chr5 75671944 75672057 -76865202 - MLT1A1 LTR MaLR -28 380 269 4 1162 490 302 40 6 chr5 75672235 75672408 -76864851 + MER21B LTR ERV1 500 678 -185 4 1162 5614 79 0 0 chr5 75672876 75673667 -76863592 - L1_Mus1 LINE L1 -284 6283 5493 4 1162 2334 40 0 0 chr5 75673667 75673943 -76863316 + L1_Mus1 LINE L1 6289 6564 -3 4 1162 234 0 0 0 chr5 75673943 75673969 -76863290 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 4 1162 277 306 142 16 chr5 75674351 75674534 -76862725 - MLT1C LTR MaLR -3 464 259 4 1162 459 118 0 0 chr5 75674548 75674624 -76862635 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1162 944 293 14 3 chr5 75674675 75674959 -76862300 - B4A SINE B4 -4 288 2 4 1162 22 56 0 0 chr5 75675083 75675119 -76862140 + AT_rich Low_complexity Low_complexity 1 36 0 4 1162 269 346 37 9 chr5 75675366 75675474 -76861785 - Lx9 LINE L1 -279 7194 7084 4 1162 213 143 0 72 chr5 75675488 75675571 -76861688 + (CAGAGA)n Simple_repeat Simple_repeat 4 80 0 4 1162 417 39 0 0 chr5 75675586 75675637 -76861622 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1162 885 258 68 42 chr5 75675637 75675900 -76861359 - ORR1D2 LTR MaLR -100 270 1 4 1162 300 272 25 0 chr5 75675972 75676053 -76861206 + ID4 SINE ID 1 83 0 4 1162 764 289 85 69 chr5 75676125 75676794 -76860465 - Lx9 LINE L1 -1648 5996 5292 4 1162 261 116 14 28 chr5 75677356 75677427 -76859832 + T-rich Low_complexity Low_complexity 1 70 0 4 1162 649 291 41 5 chr5 75677427 75677648 -76859611 + MER2 DNA MER2_type 115 343 -2 4 1162 291 114 0 0 chr5 75677944 75677988 -76859271 + (TCC)n Simple_repeat Simple_repeat 2 45 0 4 1162 260 275 30 84 chr5 75678692 75678823 -76858436 + MLT1A0 LTR MaLR 108 231 -134 4 1162 222 37 0 0 chr5 75678824 75678851 -76858408 + (GGGTG)n Simple_repeat Simple_repeat 5 31 0 4 1162 182 299 39 58 chr5 75678864 75678967 -76858292 - L2 LINE L2 -448 2971 2871 4 1162 348 24 0 0 chr5 75679087 75679128 -76858131 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1162 189 0 0 0 chr5 75679153 75679174 -76858085 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1162 315 276 57 57 chr5 75679175 75679298 -76857961 - RSINE1 SINE B4 -40 125 3 4 1162 572 0 15 0 chr5 75679298 75679366 -76857893 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 4 1162 413 81 16 0 chr5 75679364 75679426 -76857833 + (TC)n Simple_repeat Simple_repeat 1 63 0 4 1162 1332 90 36 21 chr5 75679428 75679620 -76857639 - B2_Mm2 SINE B2 0 195 1 4 1162 31 0 0 0 chr5 75679716 75679747 -76857512 + AT_rich Low_complexity Low_complexity 1 31 0 4 1162 517 245 111 19 chr5 75679747 75679765 -76857494 - B3A SINE B2 -12 186 166 4 1162 468 0 0 0 chr5 75679765 75679817 -76857442 + (TATG)n Simple_repeat Simple_repeat 2 53 0 4 1162 658 186 31 10 chr5 75679817 75679960 -76857299 - B3 SINE B2 -33 165 10 4 1162 28 0 0 0 chr5 75680789 75680817 -76856442 + AT_rich Low_complexity Low_complexity 1 28 0 4 1162 2084 232 79 55 chr5 75680828 75681331 -76855928 - Lx8 LINE L1 -2 7471 6952 4 1162 441 0 0 0 chr5 75681331 75681380 -76855879 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1162 2084 232 79 55 chr5 75681380 75681509 -76855750 - Lx8 LINE L1 -522 6951 6824 4 1162 387 336 25 0 chr5 75683080 75683199 -76854060 - L2a LINE L2 0 3426 3305 4 1162 459 337 5 61 chr5 75683220 75683416 -76853843 + MIR SINE MIR 63 247 -15 4 1162 615 199 21 7 chr5 75683996 75684138 -76853121 + B4A SINE B4 135 278 -14 4 1162 396 275 188 0 chr5 75684209 75684347 -76852912 - B4A SINE B4 -128 164 1 4 1162 390 284 48 36 chr5 75684609 75684777 -76852482 - MLT1I LTR MaLR -44 367 198 4 1162 233 111 44 0 chr5 75686641 75686686 -76850573 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 4 1162 414 0 0 0 chr5 75690890 75690936 -76846323 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1162 397 265 103 0 chr5 75690936 75691053 -76846206 - B1F2 SINE Alu -20 129 1 4 1162 311 0 26 0 chr5 75691111 75691150 -76846109 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1162 308 83 21 0 chr5 75691162 75691210 -76846049 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 4 1162 204 40 0 0 chr5 75692409 75692434 -76844825 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1162 449 225 8 0 chr5 75692698 75692818 -76844441 + (TA)n Simple_repeat Simple_repeat 1 121 0 4 1162 374 318 49 49 chr5 75692933 75693118 -76844141 + B4A SINE B4 1 185 -107 4 1162 346 38 0 37 chr5 75693142 75693196 -76844063 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1162 230 317 0 24 chr5 75693346 75693430 -76843829 + ID2 SINE ID 1 82 -1 4 1162 529 219 9 9 chr5 75693702 75693817 -76843442 - PB1D7 SINE Alu -1 119 5 4 1162 535 260 67 20 chr5 75693937 75694086 -76843173 + MTE2b LTR MaLR 1 156 -223 4 1162 532 288 52 13 chr5 75694868 75695023 -76842236 - ID_B1 SINE B4 -15 209 49 4 1162 406 293 42 65 chr5 75695352 75695520 -76841739 + RSINE1 SINE B4 2 165 0 4 1162 231 271 119 18 chr5 75695793 75695902 -76841357 + MER34A LTR ERV1 11 130 -441 4 1162 285 312 83 34 chr5 75696024 75696243 -76841016 + MER34A LTR ERV1 404 633 -11 4 1162 330 337 0 0 chr5 75696294 75696392 -76840867 + (TG)n Simple_repeat Simple_repeat 1 98 0 4 1162 264 276 79 0 chr5 75696804 75696880 -76840379 - BC1_Mm scRNA scRNA -69 83 2 4 1162 939 269 70 44 chr5 75697230 75697689 -76839570 + L1MC3 LINE L1 7314 7784 -1 4 1162 358 137 93 175 chr5 75698481 75698616 -76838643 - MTE2b LTR MaLR -4 375 256 4 1162 201 310 0 0 chr5 75698616 75698674 -76838585 + (GTATG)n Simple_repeat Simple_repeat 4 61 0 4 1162 1075 264 50 7 chr5 75698675 75698953 -76838306 - MTE2b LTR MaLR -89 290 1 4 1162 1973 174 91 16 chr5 75699079 75699528 -76837731 + RMER19A LTR ERVK 1 483 -254 4 1162 1094 98 98 0 chr5 75699529 75699723 -76837536 + ORR1A4 LTR MaLR 109 321 -8 4 1162 1075 241 31 8 chr5 75699724 75699979 -76837280 + MTD LTR MaLR 145 405 -14 4 1162 351 0 0 0 chr5 75700056 75700095 -76837164 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1162 2109 169 42 5 chr5 75700095 75700481 -76836778 + MTC LTR MaLR 22 421 0 4 1162 325 248 56 35 chr5 75700590 75700732 -76836527 - L1ME3B LINE L1 -215 6025 5881 4 1162 539 295 73 53 chr5 75700746 75700993 -76836266 - MTE2a LTR MaLR -5 374 123 4 1162 826 19 0 0 chr5 75701023 75701126 -76836133 + B1_Mm SINE Alu 34 136 -11 4 1162 216 0 0 0 chr5 75701126 75701150 -76836109 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1162 2773 111 56 32 chr5 75701295 75701759 -76835500 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1162 20541 58 47 29 chr5 75701760 75704479 -76832780 + IAPEz-int LTR ERVK 9 2774 -3707 4 1162 3208 14 0 0 chr5 75704477 75704834 -76832425 + IAPEz-int LTR ERVK 4001 4357 -2124 4 1162 6094 58 12 18 chr5 75704825 75705603 -76831656 + IAPEz-int LTR ERVK 5709 6481 0 4 1162 2805 107 56 34 chr5 75705603 75706068 -76831191 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1162 231 179 0 35 chr5 75706290 75706348 -76830911 + T-rich Low_complexity Low_complexity 4 59 0 4 1162 247 313 73 26 chr5 75706540 75706691 -76830568 - L1MDa LINE L1 -1503 5034 4877 4 1162 232 191 0 41 chr5 75706702 75706751 -76830508 - PB1D10 SINE Alu -11 106 60 4 1162 23 0 0 0 chr5 75706788 75706811 -76830448 + AT_rich Low_complexity Low_complexity 1 23 0 4 1162 821 68 27 20 chr5 75706882 75707032 -76830227 + (GGAGA)n Simple_repeat Simple_repeat 5 155 0 4 1162 443 317 84 132 chr5 75707066 75707422 -76829837 - MLT2B2 LTR ERVL -176 339 1 4 1162 414 233 46 84 chr5 75707688 75707819 -76829440 + RSINE1 SINE B4 5 130 -35 4 1162 666 231 7 7 chr5 75707850 75707998 -76829261 + B1_Mur2 SINE Alu 2 149 0 4 1162 233 236 92 28 chr5 75708040 75708149 -76829110 - L1MDa LINE L1 -4549 2084 1969 4 1162 581 231 172 23 chr5 75708191 75708569 -76828690 - L1MDa LINE L1 -4785 1848 1406 4 1162 311 257 241 28 chr5 75708569 75708781 -76828478 - L1MDa LINE L1 -6344 289 33 4 1162 282 298 142 46 chr5 75708778 75709102 -76828157 - L1MEe LINE L1 -4373 1776 1422 4 1162 1103 244 66 41 chr5 75709475 75709795 -76827464 - MTD LTR MaLR -86 333 6 4 1162 544 224 16 8 chr5 75710117 75710237 -76827022 + ORR1E LTR MaLR 1 121 -238 4 1162 632 162 47 133 chr5 75710237 75710538 -76826721 + RLTR20D LTR ERVK 1 283 -285 4 1162 416 252 33 148 chr5 75710527 75710709 -76826550 + RLTR20D LTR ERVK 407 567 -1 4 1162 634 252 70 48 chr5 75710712 75710941 -76826318 + ORR1E LTR MaLR 120 353 -6 4 1162 422 287 43 29 chr5 75710944 75711152 -76826107 - L1MC5 LINE L1 -60 7901 7691 4 1162 233 297 99 48 chr5 75711201 75711473 -76825786 - L1MEe LINE L1 -5188 931 646 4 1162 627 14 0 0 chr5 75711685 75711757 -76825502 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 4 1162 696 195 0 0 chr5 75711788 75711947 -76825312 + (TG)n Simple_repeat Simple_repeat 1 159 0 5 1162 254 288 135 104 chr5 75712176 75712598 -76824661 - L1MEe LINE L1 -5636 483 49 4 1162 531 251 55 0 chr5 75712787 75712950 -76824309 - MLT1A0 LTR MaLR -47 318 147 5 1162 1847 144 62 18 chr5 75713213 75713552 -76823707 - ORR1B1 LTR MaLR 0 394 41 5 1162 22 35 0 0 chr5 75715295 75715324 -76821935 + AT_rich Low_complexity Low_complexity 1 29 0 5 1162 21 0 0 0 chr5 75715458 75715479 -76821780 + AT_rich Low_complexity Low_complexity 1 21 0 5 1162 306 284 127 58 chr5 75715637 75715935 -76821324 + MLT1H2 LTR MaLR 81 463 -86 5 1162 567 29 0 0 chr5 75717127 75717196 -76820063 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 5 1162 587 254 0 0 chr5 75717202 75717324 -76819935 - B1_Mur2 SINE Alu -19 130 9 5 1162 445 303 0 0 chr5 75720803 75720912 -76816347 + PB1D10 SINE Alu 1 109 -8 5 1162 399 41 0 0 chr5 75720918 75720967 -76816292 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 5 1162 411 341 114 17 chr5 75721559 75721848 -76815411 + ORR1E LTR MaLR 2 318 -41 5 1162 2619 312 59 20 chr5 75721874 75722886 -76814373 - Lx8 LINE L1 -12 7461 6410 5 1162 873 301 49 20 chr5 75723064 75723571 -76813688 - Lx8 LINE L1 -1654 5990 5433 5 1162 236 311 24 90 chr5 75723572 75723738 -76813521 - L1_Mur3 LINE L1 -374 5506 5352 5 1162 722 225 0 6 chr5 75723746 75723925 -76813334 + CT-rich Low_complexity Low_complexity 2 179 0 5 1162 644 309 62 3 chr5 75723926 75724215 -76813044 - L1_Mur3 LINE L1 -522 5358 5053 5 1162 229 192 19 0 chr5 75725073 75725125 -76812134 - B1F SINE Alu -92 57 5 5 1162 357 267 73 37 chr5 75725147 75725283 -76811976 - B1F1 SINE Alu -8 141 1 5 1162 1081 90 7 0 chr5 75725471 75725615 -76811644 + B1_Mus1 SINE Alu 4 148 0 5 1162 540 202 114 15 chr5 75726075 75726206 -76811053 - B1F SINE Alu 0 149 6 5 1162 250 230 65 65 chr5 75726207 75726300 -76810959 - MER51-int LTR ERV1 -400 7416 7324 5 1162 235 170 10 78 chr5 75726329 75726431 -76810828 + (TTATA)n Simple_repeat Simple_repeat 1 95 0 5 1162 33 0 0 0 chr5 75727396 75727429 -76809830 + AT_rich Low_complexity Low_complexity 1 33 0 5 1162 1195 112 12 4 chr5 75731015 75731266 -76805993 + (GGATG)n Simple_repeat Simple_repeat 1 253 0 5 1162 366 107 0 0 chr5 75731996 75732052 -76805207 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1162 249 146 0 0 chr5 75733595 75733643 -76803616 + (T)n Simple_repeat Simple_repeat 1 48 0 5 1162 601 194 224 23 chr5 75735657 75735831 -76801428 + B3 SINE B2 2 210 -6 5 1162 304 293 0 0 chr5 75735833 75735908 -76801351 + B4A SINE B4 10 84 -208 5 1162 437 265 53 8 chr5 75735932 75736065 -76801194 + B4A SINE B4 150 288 -4 5 1162 666 85 0 0 chr5 75736090 75736184 -76801075 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 1162 676 294 29 13 chr5 75736584 75736822 -76800437 - L1MB1 LINE L1 -166 6002 5761 5 1162 462 217 67 42 chr5 75736833 75736913 -76800346 - URR1A DNA MER1_type -103 123 41 5 1162 2238 72 65 7 chr5 75736913 75737222 -76800037 + ORR1A2 LTR MaLR 1 327 0 5 1162 462 217 67 42 chr5 75737222 75737261 -76799998 - URR1A DNA MER1_type -186 40 2 5 1162 527 317 54 46 chr5 75737262 75737490 -76799769 - L1MB1 LINE L1 -423 5766 5541 5 1162 1750 189 107 6 chr5 75737490 75737835 -76799424 - RLTR14 LTR ERV1 -2 380 1 5 1162 527 317 54 46 chr5 75737835 75738016 -76799243 - L1MB1 LINE L1 -649 5540 5354 5 1162 403 270 142 11 chr5 75738017 75738193 -76799066 - L1MB1 LINE L1 -888 5252 5054 5 1162 1850 274 35 4 chr5 75740168 75740648 -76796611 - Lx5 LINE L1 -10 7040 6546 5 1162 705 188 15 15 chr5 75740677 75740812 -76796447 - B1_Mur1 SINE Alu -7 142 8 5 1162 855 261 23 28 chr5 75740817 75741034 -76796225 - B3 SINE B2 0 216 1 5 1162 567 29 0 0 chr5 75741657 75741726 -76795533 + (GTTTG)n Simple_repeat Simple_repeat 1 69 0 5 1162 279 284 19 19 chr5 75741730 75741834 -76795425 - PB1D7 SINE Alu -12 108 5 5 1162 347 280 9 91 chr5 75742003 75742113 -76795146 - PB1D10 SINE Alu -8 109 9 5 1162 25 31 0 0 chr5 75742298 75742330 -76794929 + AT_rich Low_complexity Low_complexity 1 32 0 5 1162 213 213 0 0 chr5 75742377 75742424 -76794835 + (TATG)n Simple_repeat Simple_repeat 4 50 0 5 1162 276 328 0 0 chr5 75743339 75743406 -76793853 + G-rich Low_complexity Low_complexity 2 68 0 5 1162 289 269 135 33 chr5 75744871 75745030 -76792229 + MIRb SINE MIR 86 258 -4 5 1162 195 337 109 0 chr5 75745693 75745785 -76791474 + MIRc SINE MIR 85 186 -82 5 1162 234 91 0 0 chr5 75746176 75746209 -76791050 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 5 1162 222 240 224 32 chr5 75747666 75747791 -76789468 + MIRc SINE MIR 4 152 -116 5 1162 276 270 9 107 chr5 75748571 75748683 -76788576 - PB1D10 SINE Alu -5 112 12 5 1162 267 31 0 0 chr5 75750174 75750206 -76787053 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1162 213 128 0 25 chr5 75750206 75750246 -76787013 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1162 1154 81 0 0 chr5 75750313 75750461 -76786798 - B1_Mus1 SINE Alu 0 148 1 5 1162 804 262 73 66 chr5 75750475 75750749 -76786510 - B4 SINE B4 -8 284 9 5 1162 378 308 143 35 chr5 75751083 75751342 -76785917 - LTR33 LTR ERVL -58 457 171 5 1162 242 276 0 0 chr5 75751992 75752050 -76785209 + ID4 SINE ID 7 64 -19 5 1162 1293 179 14 75 chr5 75752401 75752696 -76784563 - ORR1A4 LTR MaLR -52 277 1 5 1162 230 326 71 10 chr5 75752709 75752808 -76784451 + Charlie8 DNA MER1_type 124 228 -2200 5 1162 525 264 259 47 chr5 75753630 75753933 -76783326 - ORR1D2 LTR MaLR -4 366 1 5 1162 273 57 0 0 chr5 75754303 75754338 -76782921 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 5 1162 1986 130 38 0 chr5 75755634 75755980 -76781279 + ORR1B2 LTR MaLR 1 359 -8 5 1162 1233 291 51 75 chr5 75755993 75756739 -76780520 + L1_Mur3 LINE L1 1945 2672 -3208 5 1162 2837 269 84 81 chr5 75756736 75758112 -76779147 + L1_Mur3 LINE L1 3502 4882 -998 5 1162 575 291 62 68 chr5 75758122 75758368 -76778891 + L1_Mur3 LINE L1 5104 5376 -767 5 1162 183 42 0 0 chr5 75758368 75758392 -76778867 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5 1162 541 291 63 69 chr5 75758392 75758454 -76778805 + L1_Mur3 LINE L1 5346 5404 -476 5 1162 416 265 42 17 chr5 75758459 75758578 -76778681 + B3A SINE B2 2 123 -75 5 1162 435 234 81 0 chr5 75758638 75758762 -76778497 + L1_Rod LINE L1 5366 5499 -348 5 145 2914 272 144 42 chr5 75758761 75760244 -76777015 + Lx8 LINE L1 5838 7471 -2 5 1163 240 94 15 59 chr5 75760507 75760575 -76776684 + A-rich Low_complexity Low_complexity 4 68 0 5 1163 1182 89 9 99 chr5 75762306 75762517 -76774742 + B2_Mm1t SINE B2 2 193 0 5 1163 219 343 122 27 chr5 75762721 75762868 -76774391 + MIRb SINE MIR 3 163 -105 5 1163 484 277 89 11 chr5 75764026 75764205 -76773054 + B4A SINE B4 27 219 -73 5 1163 189 0 0 0 chr5 75765395 75765416 -76771843 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 5 1163 2981 77 20 5 chr5 75765625 75766019 -76771240 + MTB LTR MaLR 1 400 0 5 1163 1076 87 0 0 chr5 75767037 75767175 -76770084 + B1_Mus1 SINE Alu 1 138 -10 5 1163 351 0 0 0 chr5 75767175 75767214 -76770045 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1163 1010 137 100 127 chr5 75767608 75767677 -76769582 - ORR1A4 LTR MaLR 0 329 288 5 1163 1224 55 0 0 chr5 75767677 75767823 -76769436 - B1_Mm SINE Alu 0 147 2 5 1163 1010 137 100 127 chr5 75767823 75768053 -76769206 - ORR1A4 LTR MaLR -42 287 38 5 1163 351 265 48 19 chr5 75768066 75768170 -76769089 - U6 snRNA snRNA 0 107 1 5 1163 418 295 0 0 chr5 75768216 75768328 -76768931 - PB1D10 SINE Alu -2 115 4 5 1163 995 198 51 0 chr5 75768391 75768588 -76768671 - B3 SINE B2 -5 211 5 5 1163 349 244 0 24 chr5 75768638 75768722 -76768537 - ID4_ SINE ID 0 83 2 5 1163 281 296 84 0 chr5 75768785 75768927 -76768332 - L1MCa LINE L1 -4214 2294 2141 5 1163 848 199 155 5 chr5 75768941 75769128 -76768131 + B3 SINE B2 2 216 0 5 1163 357 284 104 0 chr5 75769152 75769286 -76767973 - Lx6 LINE L1 -27 7433 7286 5 1163 5580 165 8 7 chr5 75769281 75770271 -76766988 - L1_Mur2 LINE L1 -265 5612 4622 5 1163 417 66 0 0 chr5 75770273 75770334 -76766925 + (T)n Simple_repeat Simple_repeat 1 61 0 5 1163 433 227 34 0 chr5 75770389 75770477 -76766782 + RSINE1 SINE B4 3 93 -72 5 1163 22 35 0 0 chr5 75770501 75770530 -76766729 + AT_rich Low_complexity Low_complexity 1 29 0 5 1163 248 281 83 38 chr5 75770660 75770793 -76766466 - MTE2b LTR MaLR -7 372 234 5 1163 231 220 165 29 chr5 75770810 75770913 -76766346 - MTE2b LTR MaLR -209 161 45 5 1163 443 250 0 55 chr5 75770999 75771126 -76766133 - PB1D9 SINE Alu 0 120 1 5 1163 340 20 20 20 chr5 75771335 75771385 -76765874 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1163 459 0 0 0 chr5 75772121 75772172 -76765087 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1163 241 255 91 10 chr5 75772556 75772655 -76764604 + ORR1E LTR MaLR 4 110 -249 5 1163 2506 83 3 3 chr5 75774327 75774654 -76762605 + ORR1A2 LTR MaLR 1 327 0 5 1163 965 136 43 57 chr5 75774880 75775161 -76762098 + RMER17C LTR ERVK 1 277 -133 5 1163 332 200 0 85 chr5 75776104 75776186 -76761073 - B1F SINE Alu -8 141 67 5 1163 280 284 114 29 chr5 75776140 75776245 -76761014 - ID_B1 SINE B4 -8 216 103 5 1163 26 0 0 0 chr5 75776386 75776412 -76760847 + AT_rich Low_complexity Low_complexity 1 26 0 5 1163 26 0 0 0 chr5 75776711 75776737 -76760522 + AT_rich Low_complexity Low_complexity 1 26 0 5 1163 2541 121 9 69 chr5 75776831 75777250 -76760009 - ORR1B1 LTR MaLR 0 394 1 5 1163 336 304 43 26 chr5 75777542 75777657 -76759602 - PB1D10 SINE Alu 0 117 1 5 1163 453 297 20 7 chr5 75777825 75778006 -76759253 + L1MB8 LINE L1 5982 6175 -3 5 1163 647 196 0 0 chr5 75778079 75778186 -76759073 - B1_Mur2 SINE Alu -41 108 2 5 1163 257 274 0 31 chr5 75780247 75780311 -76756948 + ID4_ SINE ID 12 73 -10 5 1163 303 140 0 0 chr5 75780322 75780372 -76756887 + (GGA)n Simple_repeat Simple_repeat 3 52 0 5 1163 252 242 15 15 chr5 75780432 75780499 -76756760 - L1MEa LINE L1 -5976 94 28 5 1163 1216 235 102 0 chr5 75780653 75780977 -76756282 - MTEb LTR MaLR -20 359 3 6 1163 399 266 0 17 chr5 75780991 75781167 -76756092 + (TG)n Simple_repeat Simple_repeat 1 173 0 6 1163 416 299 0 17 chr5 75781186 75781305 -76755954 + (TG)n Simple_repeat Simple_repeat 2 118 0 6 1163 256 284 15 0 chr5 75781321 75781388 -76755871 - L1MEa LINE L1 -5974 96 29 5 1163 183 42 0 0 chr5 75781572 75781596 -76755663 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1163 733 126 59 0 chr5 75781601 75781720 -76755539 - B1_Mus2 SINE Alu -13 134 9 6 1163 285 239 8 114 chr5 75781623 75781755 -76755504 - MT2B LTR ERVL -337 264 147 6 1163 294 239 0 14 chr5 75782532 75782604 -76754655 + ID4 SINE ID 12 82 -1 6 1163 910 299 55 32 chr5 75782744 75783090 -76754169 + ORR1E LTR MaLR 1 354 -5 6 1163 268 299 39 0 chr5 75783344 75783421 -76753838 + B1F SINE Alu 2 81 -68 6 1163 230 206 14 0 chr5 75783482 75783555 -76753704 + (CGA)n Simple_repeat Simple_repeat 3 76 0 6 1163 192 182 0 0 chr5 75784476 75784509 -76752750 - MIR SINE MIR -11 251 219 6 1163 453 19 0 0 chr5 75785017 75785071 -76752188 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1163 291 200 52 10 chr5 75785944 75786040 -76751219 + GA-rich Low_complexity Low_complexity 2 101 0 6 1163 771 174 0 0 chr5 75786058 75786202 -76751057 + G-rich Low_complexity Low_complexity 3 146 0 6 1163 323 297 123 0 chr5 75786202 75786340 -76750919 + HAL1-3A_ME LINE L1 2284 2438 -420 6 1163 270 0 0 0 chr5 75786646 75786676 -76750583 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1163 317 231 7 51 chr5 75787022 75787159 -76750100 + (CATATA)n Simple_repeat Simple_repeat 6 136 0 6 1163 1250 212 49 31 chr5 75787353 75787640 -76749619 + B4A SINE B4 1 292 0 6 1163 348 138 0 0 chr5 75787652 75787717 -76749542 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1163 306 0 0 0 chr5 75787717 75787751 -76749508 + (GA)n Simple_repeat Simple_repeat 2 35 0 6 1163 306 267 66 16 chr5 75787989 75788111 -76749148 - MIRb SINE MIR -32 236 109 6 1163 194 91 30 0 chr5 75788130 75788163 -76749096 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1163 180 135 0 0 chr5 75788572 75788609 -76748650 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1163 303 308 39 83 chr5 75788830 75788986 -76748273 + MLT1A0 LTR MaLR 1 149 -216 6 1163 887 202 3 10 chr5 75788987 75789279 -76747980 + GA-rich Low_complexity Low_complexity 1 289 0 6 1163 537 273 50 31 chr5 75789279 75789438 -76747821 + MLT1A0 LTR MaLR 158 319 -46 6 1163 357 310 105 70 chr5 75789454 75789711 -76747548 + LTR79 LTR ERVL 257 522 -5 6 1163 458 256 0 40 chr5 75790444 75790570 -76746689 - PB1 SINE Alu -5 122 2 6 1163 216 0 0 0 chr5 75790648 75790672 -76746587 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 1163 201 108 0 0 chr5 75790673 75790710 -76746549 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1163 574 139 176 11 chr5 75790727 75790924 -76746335 - ORR1C2 LTR MaLR 0 384 111 6 1163 186 43 0 0 chr5 75791002 75791025 -76746234 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1163 586 280 58 92 chr5 75791061 75791301 -76745958 - B4A SINE B4 -59 233 2 6 1163 23 0 0 0 chr5 75791347 75791370 -76745889 + AT_rich Low_complexity Low_complexity 1 23 0 6 1163 1259 124 113 5 chr5 75791511 75791714 -76745545 - URR1A DNA MER1_type -1 225 1 6 1163 412 248 51 0 chr5 75792117 75792234 -76745025 - MER117 DNA MER1_type -24 173 51 6 1163 644 309 78 3 chr5 75792610 75792954 -76744305 - L1M4 LINE L1 -1334 4812 4443 6 1163 21 0 0 0 chr5 75793124 75793145 -76744114 + GC_rich Low_complexity Low_complexity 1 21 0 6 1163 1134 280 159 12 chr5 75793367 75793934 -76743325 + Charlie7 DNA MER1_type 1501 2150 -462 6 1163 436 199 0 0 chr5 75795489 75795581 -76741678 + ID4_ SINE ID 2 93 -59 6 1163 1197 173 27 9 chr5 75796460 75796682 -76740577 - URR1A DNA MER1_type 0 226 1 6 1163 789 261 14 43 chr5 75798217 75798425 -76738834 + ID_B1 SINE B4 1 202 -22 6 1163 303 357 70 15 chr5 75798698 75798897 -76738362 - MLT1N2 LTR MaLR -6 556 347 6 1163 346 257 19 19 chr5 75799281 75799384 -76737875 + ORR1D2 LTR MaLR 1 103 -267 6 1163 507 186 26 55 chr5 75799392 75799546 -76737713 + ORR1D2 LTR MaLR 214 377 -2 6 1163 339 138 0 30 chr5 75800537 75800604 -76736655 + B3 SINE B2 152 216 0 6 1163 410 277 66 25 chr5 75800727 75800849 -76736410 - ID_B1 SINE B4 -13 211 85 6 1163 1161 113 0 0 chr5 75801270 75801447 -76735812 + (GGGAGA)n Simple_repeat Simple_repeat 3 179 0 6 1163 252 0 0 0 chr5 75801447 75801474 -76735785 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 6 1163 1162 140 117 13 chr5 75801889 75802128 -76735131 - RLTR15 LTR ERVK 0 359 96 6 1163 503 110 0 0 chr5 75802156 75802229 -76735030 + RLTR15 LTR ERVK 287 359 0 6 1163 328 267 30 0 chr5 75802286 75802387 -76734872 - MER104 DNA Tc2 -4 177 74 6 1163 22 0 0 0 chr5 75802992 75803014 -76734245 + AT_rich Low_complexity Low_complexity 1 22 0 6 1163 324 229 0 0 chr5 75803015 75803085 -76734174 + B3A SINE B2 1 70 -128 6 1163 367 275 33 80 chr5 75803232 75803382 -76733877 + RSINE1 SINE B4 1 143 -22 6 1163 388 256 113 19 chr5 75805247 75805406 -76731853 + L1MD LINE L1 4087 4260 -1886 6 1163 225 182 0 0 chr5 75805406 75805461 -76731798 + A-rich Low_complexity Low_complexity 1 55 0 6 1163 638 268 0 7 chr5 75805570 75805713 -76731546 + B1_Mur1 SINE Alu 2 143 -6 6 1163 480 198 113 0 chr5 75805965 75806071 -76731188 + B1_Mur3 SINE Alu 1 118 -31 6 1163 351 0 0 0 chr5 75806096 75806135 -76731124 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 6 1163 225 0 0 0 chr5 75806137 75806162 -76731097 + (TATG)n Simple_repeat Simple_repeat 2 26 0 6 1163 424 338 0 0 chr5 75806173 75806333 -76730926 + L1ME2 LINE L1 5666 5825 -339 6 1163 389 275 18 11 chr5 75806474 75806616 -76730643 + L1ME2 LINE L1 5998 6141 -38 6 1163 685 264 97 84 chr5 75806741 75807051 -76730208 - MER58B DNA MER1_type -27 314 1 6 1163 866 107 6 51 chr5 75807265 75807422 -76729837 + B1_Mur4 SINE Alu 1 150 0 6 1163 724 172 148 0 chr5 75808644 75808772 -76728487 + B1_Mus2 SINE Alu 1 147 0 6 1163 22 0 0 0 chr5 75808772 75808794 -76728465 + AT_rich Low_complexity Low_complexity 1 22 0 6 1163 360 0 0 0 chr5 75809334 75809374 -76727885 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1163 329 240 0 51 chr5 75809472 75809551 -76727708 - ID4_ SINE ID 0 83 9 6 1163 270 0 0 0 chr5 75809667 75809697 -76727562 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1163 1822 277 133 15 chr5 75809774 75810686 -76726573 - L1_Mur3 LINE L1 -1709 4171 3153 6 1163 23 33 0 0 chr5 75810686 75810716 -76726543 + AT_rich Low_complexity Low_complexity 1 30 0 6 1163 464 314 0 54 chr5 75811079 75811227 -76726032 - ID_B1 SINE B4 -4 220 81 6 1163 2094 300 47 26 chr5 75811228 75812177 -76725082 - L1M4c LINE L1 -2822 3261 2299 6 1163 764 241 86 29 chr5 75812252 75812530 -76724729 + Lx9 LINE L1 7350 7643 -1 6 1163 1424 154 9 0 chr5 75812843 75813063 -76724196 + URR1B DNA MER1_type 2 223 -2 6 1163 301 93 52 26 chr5 75813352 75813429 -76723830 + CT-rich Low_complexity Low_complexity 1 79 0 6 1163 761 293 81 55 chr5 75813430 75813556 -76723703 - MLT2B4 LTR ERVL -148 408 287 6 1163 3614 13 2 0 chr5 75813556 75813951 -76723308 + MTA_Mm LTR MaLR 1 396 0 6 1163 9384 30 4 3 chr5 75813951 75815048 -76722211 + MTA_Mm-int LTR MaLR 1 1098 0 6 1163 3614 13 2 0 chr5 75815048 75815443 -76721816 + MTA_Mm LTR MaLR 1 396 0 6 1163 761 293 81 55 chr5 75815443 75815697 -76721562 - MLT2B4 LTR ERVL -270 286 18 6 1163 25 31 0 0 chr5 75815699 75815731 -76721528 + AT_rich Low_complexity Low_complexity 1 32 0 6 1163 355 297 0 0 chr5 75815738 75815829 -76721430 - PB1D10 SINE Alu -21 96 6 6 1163 1280 171 13 9 chr5 75817906 75818130 -76719129 - URR1B DNA MER1_type 0 225 1 6 1163 536 130 11 0 chr5 75818268 75818360 -76718899 + (TTCC)n Simple_repeat Simple_repeat 3 95 0 6 1163 1053 277 17 40 chr5 75818474 75818824 -76718435 - MTE2b LTR MaLR -28 351 10 6 1163 258 152 0 42 chr5 75819107 75819155 -76718104 + ID4 SINE ID 2 47 -36 6 1163 340 248 15 60 chr5 75820145 75820229 -76717030 - MER53 DNA hAT 0 193 114 6 1163 1902 125 0 116 chr5 75820229 75820600 -76716659 - ORR1A4 LTR MaLR -1 328 1 6 1163 372 200 17 68 chr5 75820600 75820648 -76716611 + MER53 DNA hAT 95 137 -56 6 1163 520 260 76 8 chr5 75820653 75820785 -76716474 + B1_Mur1 SINE Alu 5 145 -4 6 1163 743 282 43 43 chr5 75820852 75821108 -76716151 + MTD LTR MaLR 15 270 -149 6 1163 552 250 20 7 chr5 75821163 75821312 -76715947 + MTD LTR MaLR 269 419 0 6 1163 3265 53 2 0 chr5 75821317 75821712 -76715547 - MTA_Mm LTR MaLR 0 396 1 6 1163 3559 18 2 0 chr5 75821809 75822204 -76715055 + MTA_Mm LTR MaLR 1 396 0 6 1163 454 230 35 101 chr5 75822358 75822527 -76714732 - RMER30 DNA MER1_type -7 195 38 6 1163 256 296 0 0 chr5 75822629 75822683 -76714576 + C-rich Low_complexity Low_complexity 2 55 0 6 1163 259 312 0 0 chr5 75823011 75823088 -76714171 - ID4 SINE ID -4 79 3 6 1163 332 259 12 12 chr5 75824738 75824824 -76712435 + Arthur1B DNA Tip100 2 87 -1138 6 1163 284 207 43 128 chr5 75825720 75825814 -76711445 - RMER1C Other Other -14 1328 1243 6 1163 576 257 112 19 chr5 75825748 75825954 -76711305 - Lx8 LINE L1 -32 7441 7217 6 1163 319 328 33 0 chr5 75825956 75826078 -76711181 - ORR1E LTR MaLR -233 126 1 6 1163 541 256 121 5 chr5 75826226 75826450 -76710809 + MLT1B LTR MaLR 141 390 0 6 1163 511 222 67 31 chr5 75826701 75826887 -76710372 + L1ME1 LINE L1 5589 5780 -664 6 1163 232 326 20 20 chr5 75826923 75827023 -76710236 + RMER15 LTR ERVL 371 470 -105 6 1163 498 276 101 25 chr5 75827171 75827457 -76709802 + L1ME1 LINE L1 5764 6071 -108 6 1163 268 230 174 45 chr5 75828551 75828683 -76708576 + L1MC5 LINE L1 7280 7428 -533 6 1163 488 245 229 30 chr5 75828894 75829219 -76708040 + MLT1B LTR MaLR 1 390 0 6 1163 3581 178 77 88 chr5 75829490 75829698 -76707561 + RMER19B LTR ERVK 1 159 -743 7 1163 2796 55 3 0 chr5 75829698 75830045 -76707214 + L1Md_F2 LINE L1 6223 6570 -12 7 1163 3581 178 77 88 chr5 75830045 75830748 -76706511 + RMER19B LTR ERVK 160 902 0 7 1163 753 252 169 79 chr5 75831143 75831677 -76705582 + L1MB4 LINE L1 5430 6011 -169 7 1163 2546 86 3 0 chr5 75831704 75832030 -76705229 + ORR1A2 LTR MaLR 1 327 0 7 1163 552 255 27 14 chr5 75832082 75832229 -76705030 + B3 SINE B2 1 149 -67 7 1163 366 23 0 0 chr5 75832241 75832284 -76704975 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1163 185 111 56 0 chr5 75832306 75832342 -76704917 + CT-rich Low_complexity Low_complexity 3 40 0 7 1163 416 276 0 0 chr5 75832466 75832571 -76704688 - PB1D10 SINE Alu -3 114 10 7 1163 2099 174 6 22 chr5 75832636 75833001 -76704258 + ORR1B2 LTR MaLR 1 359 -8 7 1163 201 74 0 0 chr5 75833130 75833157 -76704102 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 7 1163 255 157 0 73 chr5 75833324 75833379 -76703880 - ORR1E LTR MaLR 0 359 309 7 1163 584 258 131 81 chr5 75833388 75833463 -76703796 - RLTR12B LTR ERVK -30 498 404 7 1163 3274 62 0 0 chr5 75833463 75833863 -76703396 - MTB LTR MaLR 0 400 1 7 1163 584 258 131 81 chr5 75833863 75834259 -76703000 - RLTR12B LTR ERVK -125 403 3 7 1163 828 234 122 17 chr5 75834262 75834492 -76702767 - MTD LTR MaLR -44 375 122 7 1163 717 294 44 49 chr5 75834597 75834822 -76702437 + B4A SINE B4 56 279 -13 7 1163 468 0 0 0 chr5 75834873 75834925 -76702334 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 1163 240 158 0 0 chr5 75834967 75835005 -76702254 + L1M6 LINE L1 160 197 -6299 7 1163 425 320 67 67 chr5 75835600 75835838 -76701421 + B4A SINE B4 2 239 -53 7 1163 387 0 0 0 chr5 75835888 75835931 -76701328 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1163 348 64 0 0 chr5 75836381 75836428 -76700831 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1163 227 271 33 33 chr5 75836499 75836560 -76700699 + MLT1J LTR MaLR 112 172 -340 7 1163 210 280 0 0 chr5 75836614 75836664 -76700595 + C-rich Low_complexity Low_complexity 1 50 0 7 1163 617 211 67 47 chr5 75836878 75837027 -76700232 - MER5A1 DNA MER1_type -13 153 2 7 1163 621 289 123 11 chr5 75838025 75838335 -76698924 - ORR1E LTR MaLR 0 370 7 7 1163 275 206 30 89 chr5 75839738 75839839 -76697420 - MLT1A1 LTR MaLR 0 408 314 7 1163 363 44 0 0 chr5 75839919 75839964 -76697295 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1163 737 278 153 12 chr5 75839970 75840225 -76697034 - B4 SINE B4 -1 291 1 7 1163 279 264 96 104 chr5 75840373 75840508 -76696751 - MLT1A1 LTR MaLR -274 134 1 7 1163 212 293 169 8 chr5 75840531 75840655 -76696604 - MIR SINE MIR -2 260 117 7 1163 992 172 75 5 chr5 75840738 75840937 -76696322 - ORR1C2 LTR MaLR 0 384 172 7 1163 204 67 0 0 chr5 75840937 75840967 -76696292 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 7 1163 306 156 12 38 chr5 75840975 75841055 -76696204 + GA-rich Low_complexity Low_complexity 2 79 0 7 1163 328 190 106 39 chr5 75841057 75841161 -76696098 - ORR1C2 LTR MaLR -198 131 21 7 1163 2152 134 5 126 chr5 75841167 75841602 -76695657 - ORR1C2-int LTR MaLR -1 1508 1127 7 1163 542 164 8 0 chr5 75841667 75841789 -76695470 + (CA)n Simple_repeat Simple_repeat 1 123 0 7 1163 701 264 43 16 chr5 75842939 75843124 -76694135 + B3 SINE B2 27 216 0 7 1163 291 237 0 0 chr5 75843242 75843301 -76693958 + ID_B1 SINE B4 121 179 -45 7 1163 264 301 0 14 chr5 75843348 75843422 -76693837 + MER2 DNA MER2_type 1 73 -272 7 1163 1043 57 11 64 chr5 75843478 75843665 -76693594 + (TCC)n Simple_repeat Simple_repeat 2 178 0 7 1163 180 77 0 0 chr5 75843706 75843732 -76693527 + (TCC)n Simple_repeat Simple_repeat 1 26 0 7 1163 561 291 7 7 chr5 75843777 75843929 -76693330 + MER2 DNA MER2_type 118 269 -76 7 1163 294 29 0 0 chr5 75845695 75845730 -76691529 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 7 1163 188 284 11 138 chr5 75845761 75845855 -76691404 - MIR SINE MIR -171 91 10 7 1163 261 0 0 0 chr5 75846936 75846965 -76690294 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1163 847 246 20 20 chr5 75848025 75848220 -76689039 + ID_B1 SINE B4 9 203 -21 7 1163 321 186 0 0 chr5 75848222 75848292 -76688967 + (TG)n Simple_repeat Simple_repeat 2 71 0 7 1163 195 313 0 0 chr5 75848297 75848476 -76688783 + (TA)n Simple_repeat Simple_repeat 2 180 0 7 1163 242 284 14 0 chr5 75848483 75848557 -76688702 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 7 1163 201 232 0 51 chr5 75848571 75848689 -76688570 + (TATG)n Simple_repeat Simple_repeat 4 115 0 7 1163 188 256 0 49 chr5 75848739 75848903 -76688356 + (TATG)n Simple_repeat Simple_repeat 4 159 0 7 1163 333 330 0 0 chr5 75848908 75849020 -76688239 + (TATATG)n Simple_repeat Simple_repeat 3 114 0 7 1163 207 309 0 0 chr5 75849021 75849199 -76688060 + (TA)n Simple_repeat Simple_repeat 2 179 0 7 1163 467 326 0 0 chr5 75849216 75849363 -76687896 + (TG)n Simple_repeat Simple_repeat 2 148 0 7 1163 243 0 0 0 chr5 75849363 75849390 -76687869 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 1163 189 390 30 0 chr5 75849601 75849701 -76687558 + MIR SINE MIR 49 151 -57 7 1163 246 128 0 0 chr5 75850665 75850704 -76686555 + (ATG)n Simple_repeat Simple_repeat 3 41 0 7 1163 273 297 45 61 chr5 75850715 75850868 -76686391 - MIR SINE MIR -29 233 83 7 1163 700 127 18 18 chr5 75852056 75852168 -76685091 + PB1D9 SINE Alu 2 113 -7 7 1163 232 302 98 77 chr5 75852317 75852511 -76684748 + LTR85a LTR Gypsy? 224 421 -281 7 1163 184 261 15 30 chr5 75852573 75852640 -76684619 - L2 LINE L2 -2546 873 808 7 1163 192 312 0 61 chr5 75852674 75852756 -76684503 - MIRc SINE MIR -74 194 118 7 1163 453 221 52 21 chr5 75852869 75852966 -76684293 + B1F SINE Alu 49 148 -1 7 1163 288 0 0 0 chr5 75854027 75854059 -76683200 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 1163 333 0 0 0 chr5 75854059 75854095 -76683164 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1163 387 260 40 110 chr5 75854111 75854297 -76682962 + MTEb LTR MaLR 152 348 -31 7 1163 553 319 88 11 chr5 75854322 75854585 -76682674 - L1MA5 LINE L1 -400 5900 5618 7 1163 233 297 49 10 chr5 75854588 75854690 -76682569 + L1MA5 LINE L1 5913 6018 -282 7 1163 691 264 0 25 chr5 75854864 75855027 -76682232 + RSINE1 SINE B4 3 161 -4 7 1163 286 264 0 0 chr5 75855086 75855158 -76682101 + L1MA5 LINE L1 6205 6276 -24 7 1163 903 173 0 7 chr5 75855174 75855325 -76681934 + B1_Mur4 SINE Alu 1 150 0 7 1163 227 329 133 44 chr5 75856988 75857515 -76679744 - L1ME5 LINE L1 -134 6060 5487 7 1163 379 343 35 71 chr5 75857648 75857874 -76679385 - L1M5 LINE L1 -802 5344 5127 7 1163 293 294 35 56 chr5 75858929 75859073 -76678186 - MLT1A0 LTR MaLR -224 141 1 7 1163 335 344 23 30 chr5 75859088 75859220 -76678039 + RSINE1 SINE B4 3 133 -32 7 1163 220 262 0 0 chr5 75859243 75859285 -76677974 + PB1D10 SINE Alu 52 93 -24 7 1163 664 263 73 49 chr5 75859594 75859798 -76677461 - B3A SINE B2 -2 214 6 7 1163 727 214 75 184 chr5 75859807 75860199 -76677060 + MTE2a LTR MaLR 7 364 -15 7 1163 270 316 196 77 chr5 75860334 75860660 -76676599 + MLT1L LTR MaLR 237 601 -9 7 1163 270 265 48 58 chr5 75860950 75861054 -76676205 + ORR1E LTR MaLR 1 103 -256 7 1163 554 163 22 15 chr5 75861164 75861301 -76675958 + (TAGA)n Simple_repeat Simple_repeat 3 140 0 7 1163 396 238 207 14 chr5 75861302 75861447 -76675812 + MLT1D LTR MaLR 320 492 -13 7 1163 348 305 80 57 chr5 75861547 75861759 -76675500 + MIRb SINE MIR 51 267 -1 7 1163 468 334 119 56 chr5 75861950 75862327 -76674932 - LTR16C LTR ERVL -2 487 87 7 1163 255 345 19 39 chr5 75863161 75863315 -76673944 - MIRc SINE MIR -5 263 113 7 1163 180 0 0 0 chr5 75863484 75863504 -76673755 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1163 222 118 0 0 chr5 75863775 75863809 -76673450 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1163 206 118 0 0 chr5 75864418 75864452 -76672807 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1163 198 270 94 16 chr5 75864501 75864565 -76672694 - MIR SINE MIR -55 153 85 7 1163 229 216 101 63 chr5 75865088 75865167 -76672092 - MER91A DNA Tip100 -79 117 36 7 1163 236 368 35 64 chr5 75865414 75865617 -76671642 + B3A SINE B2 2 198 0 7 1163 546 360 5 50 chr5 75866484 75866683 -76670576 + ORR1E LTR MaLR 1 190 -169 7 1163 486 316 22 8 chr5 75868162 75868296 -76668963 - B1F SINE Alu -8 141 6 7 1163 245 352 31 23 chr5 75869527 75869655 -76667604 + Charlie1b DNA MER1_type 1 129 -394 7 1163 498 108 0 0 chr5 75869655 75869729 -76667530 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 7 1163 1060 59 22 0 chr5 75869731 75869866 -76667393 - B1_Mus2 SINE Alu -6 141 4 7 1163 780 259 143 62 chr5 75869872 75870243 -76667016 + Charlie1b DNA MER1_type 119 519 -4 7 1163 2688 48 0 0 chr5 75870697 75871008 -76666251 - RLTR10E LTR ERVK 0 311 1 7 1163 1502 208 81 2 chr5 75871045 75871440 -76665819 - RMER10A LTR ERVL -5 437 12 7 1163 273 67 67 0 chr5 75872079 75872139 -76665120 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 7 1163 1256 28 7 0 chr5 75872142 75872287 -76664972 - B1_Mm SINE Alu 0 147 2 7 1163 587 247 77 87 chr5 75872447 75872655 -76664604 + ID_B1 SINE B4 15 220 -4 7 1163 812 181 22 16 chr5 75872725 75872912 -76664347 - B3 SINE B2 0 198 1 7 1163 522 43 0 0 chr5 75873463 75873532 -76663727 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 7 1163 1730 277 72 23 chr5 75873543 75874186 -76663073 + Lx8 LINE L1 6791 7464 -9 7 1163 183 321 25 102 chr5 75874426 75874544 -76662715 + MIR SINE MIR 150 258 -4 7 1163 416 286 143 0 chr5 75875951 75876091 -76661168 + RSINE1 SINE B4 5 164 -1 7 1163 378 0 0 0 chr5 75876167 75876209 -76661050 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1163 1131 232 125 49 chr5 75876298 75876642 -76660617 + ORR1D2 LTR MaLR 1 370 0 7 1163 260 318 102 23 chr5 75876679 75876895 -76660364 + ORSL-2b DNA Tip100 165 397 -111 7 1163 1646 219 51 22 chr5 75876953 75877308 -76659951 - ORR1D2 LTR MaLR -5 365 1 7 1163 626 172 0 8 chr5 75878123 75878252 -76659007 + CT-rich Low_complexity Low_complexity 4 131 0 8 1163 243 79 0 0 chr5 75878451 75878489 -76658770 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 8 1163 1167 52 0 0 chr5 75878489 75878625 -76658634 - B1_Mus2 SINE Alu -11 136 1 8 1163 853 142 0 0 chr5 75878660 75878787 -76658472 - B3 SINE B2 -88 128 2 8 1163 699 228 81 19 chr5 75878833 75878899 -76658360 + ID SINE ID 8 83 -141 8 1163 403 262 59 37 chr5 75878899 75879034 -76658225 + B1F1 SINE Alu 3 140 -9 8 1163 246 284 37 152 chr5 75878919 75879110 -76658149 - YREP_Mm Unknown Unknown -1518 294 126 8 1163 235 328 139 37 chr5 75879313 75879494 -76657765 - MIRb SINE MIR -31 237 28 8 1163 576 341 97 33 chr5 75880230 75880655 -76656604 - MER20B DNA MER1_type -42 741 290 8 1163 26 30 0 0 chr5 75881046 75881079 -76656180 + AT_rich Low_complexity Low_complexity 1 33 0 8 1163 365 325 105 102 chr5 75881302 75881634 -76655625 + MTEa LTR MaLR 1 333 -46 8 1163 468 133 19 19 chr5 75882299 75882406 -76654853 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 8 1163 1272 176 14 0 chr5 75882410 75882626 -76654633 - URR1B DNA MER1_type 0 225 7 8 1163 631 48 28 19 chr5 75882681 75882787 -76654472 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 8 1163 4713 178 63 60 chr5 75883019 75883262 -76653997 - RLTR25B LTR ERVK -2 1026 813 8 1163 432 0 0 0 chr5 75883262 75883310 -76653949 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1163 4713 178 63 60 chr5 75883310 75884089 -76653170 - RLTR25B LTR ERVK -216 812 1 8 1163 300 219 56 28 chr5 75884126 75884234 -76653025 - Lx6 LINE L1 0 7460 7350 8 1163 342 338 59 32 chr5 75884536 75884756 -76652503 + L3 LINE CR1 3945 4170 -319 8 1163 217 83 0 59 chr5 75885569 75885620 -76651639 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 8 1163 285 113 48 16 chr5 75885625 75885688 -76651571 + L1_Mus3 LINE L1 6504 6568 -70 8 1163 852 136 0 15 chr5 75885688 75885822 -76651437 - B1_Mur4 SINE Alu -15 135 4 8 1163 337 226 26 121 chr5 75885718 75885834 -76651425 - MT2B LTR ERVL -344 257 153 8 1163 646 327 17 84 chr5 75885942 75886177 -76651082 + B4A SINE B4 9 237 -55 8 1163 2446 103 8 8 chr5 75886177 75886540 -76650719 + L1_Mus3 LINE L1 6271 6633 -5 8 1163 646 327 17 84 chr5 75886540 75886601 -76650658 + B4A SINE B4 238 285 -7 8 1163 267 31 0 0 chr5 75886772 75886804 -76650455 + (TC)n Simple_repeat Simple_repeat 1 32 0 8 1163 421 174 0 0 chr5 75886851 75886920 -76650339 - PB1D10 SINE Alu -2 115 47 8 1163 777 242 177 31 chr5 75887678 75888068 -76649191 - L1MB5 LINE L1 0 6174 5696 8 1163 287 296 0 0 chr5 75888246 75888317 -76648942 + (TG)n Simple_repeat Simple_repeat 2 72 0 8 1163 197 0 71 0 chr5 75888369 75888397 -76648862 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 8 1163 511 275 42 105 chr5 75888404 75888595 -76648664 - B4A SINE B4 -95 197 19 8 1163 411 21 0 0 chr5 75888597 75888645 -76648614 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1163 23 0 0 0 chr5 75889561 75889584 -76647675 + AT_rich Low_complexity Low_complexity 1 23 0 8 1164 377 276 133 0 chr5 75890754 75890859 -76646400 + ID_B1 SINE B4 72 190 -34 8 1164 761 229 0 0 chr5 75891019 75891172 -76646087 - B3A SINE B2 -45 153 1 8 1164 288 304 114 45 chr5 75891246 75891422 -76645837 + L1ME2 LINE L1 5943 6130 -34 8 1164 490 293 122 31 chr5 75891496 75891550 -76645709 + ID SINE ID 26 72 -152 8 1164 356 183 0 0 chr5 75891550 75891610 -76645649 + PB1D9 SINE Alu 10 69 -51 8 1164 490 293 122 31 chr5 75891610 75891768 -76645491 + ID_B1 SINE B4 73 211 -13 8 1164 189 0 0 0 chr5 75891905 75891926 -76645333 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 8 1164 389 250 79 29 chr5 75891926 75892056 -76645203 - B1_Mur2 SINE Alu -11 138 2 8 1164 298 208 0 0 chr5 75892313 75892366 -76644893 + RSINE1 SINE B4 82 134 -31 8 1164 545 150 0 10 chr5 75892406 75892507 -76644752 + (TTTA)n Simple_repeat Simple_repeat 1 100 0 8 1164 1193 68 0 0 chr5 75892507 75892653 -76644606 - B1_Mus2 SINE Alu -1 146 1 8 1164 342 0 0 0 chr5 75893143 75893181 -76644078 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1164 214 289 0 12 chr5 75893690 75893736 -76643523 + (TCTG)n Simple_repeat Simple_repeat 3 48 0 8 1164 362 21 21 0 chr5 75893736 75893783 -76643476 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 8 1164 211 226 0 46 chr5 75893783 75893837 -76643422 + CT-rich Low_complexity Low_complexity 1 52 0 8 1164 222 128 26 0 chr5 75895109 75895148 -76642111 + L2a LINE L2 3377 3416 -10 8 1164 636 268 52 87 chr5 75895265 75895551 -76641708 - LTR82B Low_complexity ERVL 0 830 555 8 1164 987 214 30 5 chr5 75895862 75896064 -76641195 - B3 SINE B2 -4 212 6 8 1164 253 325 46 65 chr5 75896580 75896840 -76640419 - Charlie26a DNA MER1_type -8 317 63 8 1164 217 308 111 0 chr5 75896886 75897003 -76640256 + MIRb SINE MIR 24 153 -115 8 1164 554 295 127 48 chr5 75897418 75897629 -76639630 + ORR1E LTR MaLR 3 221 -138 8 1164 441 0 0 0 chr5 75897629 75897678 -76639581 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1164 554 295 127 48 chr5 75897678 75897797 -76639462 + ORR1E LTR MaLR 222 359 0 8 1164 563 306 75 130 chr5 75897799 75898145 -76639114 + ORR1E-int LTR MaLR 1 327 -1253 8 1164 2083 278 74 5 chr5 75898153 75898723 -76638536 + ORR1E-int LTR MaLR 917 1527 -53 8 1164 691 271 141 28 chr5 75898723 75899042 -76638217 + ORR1E LTR MaLR 1 355 -4 8 1164 213 231 0 0 chr5 75899066 75899105 -76638154 + L3 LINE CR1 4334 4372 -117 8 1164 400 385 44 36 chr5 75900214 75900602 -76636657 - LTR82B Low_complexity ERVL -207 623 233 8 1164 221 309 20 50 chr5 75900840 75900939 -76636320 - MIRb SINE MIR -19 249 154 8 1164 235 222 0 18 chr5 75902208 75902263 -76634996 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1164 378 0 0 0 chr5 75903585 75903627 -76633632 + (TA)n Simple_repeat Simple_repeat 2 43 0 8 1164 344 282 58 78 chr5 75903770 75903924 -76633335 + B4 SINE B4 70 220 -72 8 1164 761 190 0 0 chr5 75903793 75903930 -76633329 + B1_Mus1 SINE Alu 12 148 0 8 1164 1203 112 39 17 chr5 75903932 75904113 -76633146 + B2_Mm2 SINE B2 2 186 -9 8 1164 870 153 11 6 chr5 75904169 75904347 -76632912 + GA-rich Low_complexity Low_complexity 2 180 0 8 1164 1146 110 0 0 chr5 75904347 75904558 -76632701 + (GAA)n Simple_repeat Simple_repeat 1 211 0 8 1164 297 0 0 0 chr5 75904570 75904603 -76632656 + (GA)n Simple_repeat Simple_repeat 2 34 0 8 1164 254 306 80 40 chr5 75904749 75904950 -76632309 - LTR82A LTR ERVL -368 504 296 8 1164 1091 185 39 65 chr5 75905074 75905381 -76631878 + MER33 DNA MER1_type 26 324 0 8 1164 554 41 14 0 chr5 75905523 75905596 -76631663 + (TG)n Simple_repeat Simple_repeat 2 75 0 8 1164 381 287 108 0 chr5 75906608 75906737 -76630522 - L1MA10 LINE L1 -11 6323 6181 8 1164 745 190 28 7 chr5 75906785 75906928 -76630331 + B1_Mur2 SINE Alu 2 147 -2 8 1164 246 217 23 102 chr5 75906937 75907065 -76630194 - MER96B DNA hAT -251 166 49 8 1164 231 297 0 45 chr5 75907638 75907705 -76629554 + ID2 SINE ID 20 83 0 8 1164 616 193 0 24 chr5 75907705 75907870 -76629389 + GA-rich Low_complexity Low_complexity 3 163 0 8 1164 212 319 158 23 chr5 75908818 75909078 -76628181 + L2 LINE L2 2787 3081 -338 8 1164 964 145 271 8 chr5 75909287 75909538 -76627721 + ORR1B2 LTR MaLR 43 359 -8 8 1164 277 308 54 66 chr5 75909540 75909707 -76627552 + LTR40b LTR ERVL 102 266 -253 8 1164 450 0 0 0 chr5 75909710 75909760 -76627499 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1164 198 0 0 0 chr5 75909982 75910004 -76627255 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1164 283 293 56 16 chr5 75910111 75910236 -76627023 + LTR40b LTR ERVL 333 462 0 8 1164 1010 208 35 5 chr5 75910354 75910552 -76626707 + B3 SINE B2 1 204 -12 8 1164 233 311 132 29 chr5 75910700 75910836 -76626423 - L1MC4 LINE L1 -724 7237 7088 8 1164 337 278 169 31 chr5 75911015 75911275 -76625984 - L1MC4 LINE L1 -1090 6952 6638 8 1164 757 287 80 55 chr5 75913161 75913563 -76623696 + MLT1C LTR MaLR 56 467 0 8 1164 387 33 32 16 chr5 75913976 75914038 -76623221 + (GA)n Simple_repeat Simple_repeat 2 64 0 8 1164 306 0 0 0 chr5 75914404 75914438 -76622821 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1164 204 125 0 0 chr5 75915244 75915276 -76621983 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1164 339 25 0 0 chr5 75915399 75915439 -76621820 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1164 666 207 0 0 chr5 75915486 75915602 -76621657 - B3 SINE B2 -86 130 15 8 1164 294 29 0 0 chr5 75915602 75915637 -76621622 + (TC)n Simple_repeat Simple_repeat 1 35 0 8 1164 540 81 0 0 chr5 75915637 75915710 -76621549 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 1164 180 0 0 0 chr5 75915743 75915763 -76621496 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 8 1164 234 239 0 0 chr5 75915844 75915915 -76621344 + (CA)n Simple_repeat Simple_repeat 2 72 0 8 1164 180 0 0 0 chr5 75916561 75916581 -76620678 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 1164 49 52 0 0 chr5 75918727 75918804 -76618455 + AT_rich Low_complexity Low_complexity 1 77 0 8 1164 2127 115 12 58 chr5 75918988 75919331 -76617928 - ORR1A2 LTR MaLR 0 327 1 8 1164 853 211 0 0 chr5 75920089 75920250 -76617009 + B3 SINE B2 28 188 -28 8 1164 200 217 0 61 chr5 75920362 75920411 -76616848 + polypurine Low_complexity Low_complexity 3 48 0 8 1164 621 246 0 0 chr5 75920424 75920546 -76616713 + B1_Mur2 SINE Alu 6 127 -22 8 1164 207 180 19 39 chr5 75920562 75920614 -76616645 + (CAGAGA)n Simple_repeat Simple_repeat 3 53 0 8 1164 616 264 130 10 chr5 75920646 75920907 -76616352 + MLT1A0 LTR MaLR 61 400 -8 8 1164 786 145 0 8 chr5 75920908 75921040 -76616219 + ORR1C1 LTR MaLR 248 378 0 8 1164 332 85 0 0 chr5 75921627 75921674 -76615585 - RMER6D LTR ERVK -671 49 3 8 1164 707 206 6 53 chr5 75921675 75921766 -76615493 + B3 SINE B2 56 146 -70 8 1164 3376 38 2 10 chr5 75921766 75922169 -76615090 + MTB LTR MaLR 1 400 0 9 1164 707 206 6 53 chr5 75922169 75922246 -76615013 + B3 SINE B2 147 216 0 8 1164 274 233 23 25 chr5 75922315 75922414 -76614845 + MIRc SINE MIR 78 176 -32 9 1164 2348 125 37 42 chr5 75922954 75923363 -76613896 + MTB_Mm LTR MaLR 1 407 0 9 1164 615 210 34 34 chr5 75923607 75923755 -76613504 + B1F1 SINE Alu 1 148 -1 9 1164 1351 231 18 161 chr5 75923764 75924390 -76612869 + MT2B LTR ERVL 1 536 -65 9 1164 1284 11 35 0 chr5 75924394 75924568 -76612691 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 9 1164 814 234 130 19 chr5 75924928 75925189 -76612070 + MLT1A0 LTR MaLR 1 290 -75 9 1164 697 306 18 0 chr5 75925372 75925542 -76611717 + B3A SINE B2 9 181 -17 9 1164 220 241 16 49 chr5 75925598 75925659 -76611600 + PB1D9 SINE Alu 1 59 -61 9 1164 627 291 89 30 chr5 75925825 75926129 -76611130 + MER45B DNA Tip100 1 322 -718 9 1164 508 239 62 0 chr5 75926361 75926491 -76610768 + B1F SINE Alu 5 142 -7 9 1164 426 260 81 14 chr5 75926542 75926690 -76610569 + RSINE1 SINE B4 4 161 -4 9 1164 1248 204 90 0 chr5 75926719 75927008 -76610251 - ORR1D1-int LTR MaLR -1052 318 4 9 1164 1589 205 83 20 chr5 75927011 75927359 -76609900 - ORR1D1 LTR MaLR 0 374 5 9 1164 1162 144 43 168 chr5 75927364 75927700 -76609559 + MTD-int LTR MaLR 911 1203 -55 9 1164 2698 40 0 15 chr5 75927700 75928033 -76609226 + L1Md_F2 LINE L1 6254 6581 -1 9 1164 1162 144 43 168 chr5 75928033 75928089 -76609170 + MTD-int LTR MaLR 1204 1254 -4 9 1164 1652 218 67 3 chr5 75928098 75928485 -76608774 + MTD LTR MaLR 6 417 -2 9 1164 631 221 101 6 chr5 75928497 75928656 -76608603 - B3A SINE B2 -24 174 1 9 1164 325 200 0 0 chr5 75928708 75928773 -76608486 + PB1D9 SINE Alu 50 114 -6 9 1164 366 184 0 0 chr5 75928775 75928851 -76608408 + (ATG)n Simple_repeat Simple_repeat 3 78 0 9 1164 316 248 163 14 chr5 75928855 75929002 -76608257 - HAL1 LINE L1 -69 2438 2270 9 1164 429 268 54 108 chr5 75929022 75929189 -76608070 - RSINE1 SINE B4 -6 159 2 9 1164 531 258 117 30 chr5 75929769 75930007 -76607252 + MTE2a LTR MaLR 1 256 -123 9 1164 461 239 128 14 chr5 75930107 75930290 -76606969 + L1MA4 LINE L1 5061 5294 -849 9 1164 638 191 76 8 chr5 75930295 75930427 -76606832 + B1_Mur2 SINE Alu 3 143 -6 9 1164 904 248 21 8 chr5 75930455 75930691 -76606568 + ORR1D2 LTR MaLR 1 239 -131 9 1164 310 274 19 19 chr5 75930801 75930909 -76606350 + ORR1D2 LTR MaLR 258 365 -5 9 1164 778 318 61 43 chr5 75930937 75931561 -76605698 + L1MA4 LINE L1 5287 5921 -379 9 1164 242 158 65 81 chr5 75931744 75931806 -76605453 + ORR1D2 LTR MaLR 296 356 -14 9 1164 396 59 0 0 chr5 75931814 75931865 -76605394 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1164 437 318 176 45 chr5 75931904 75932596 -76604663 + L2a LINE L2 2643 3425 -1 9 1164 477 0 0 0 chr5 75932676 75932729 -76604530 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 1164 257 272 12 0 chr5 75933085 75933166 -76604093 - L3b LINE CR1 -259 223 142 9 1164 1055 56 28 7 chr5 75933509 75933654 -76603605 + B1_Mus1 SINE Alu 1 148 0 9 1164 980 50 2 21 chr5 75934406 75934550 -76602709 + B1_Mus2 SINE Alu 7 147 0 9 1164 1461 42 0 5 chr5 75934853 75935147 -76602112 - L1_Mus1 LINE L1 0 6567 6374 9 1164 310 247 69 88 chr5 75935727 75935829 -76601430 + RSINE1 SINE B4 25 124 -41 9 1164 225 0 0 0 chr5 75935829 75935854 -76601405 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1164 898 92 34 11 chr5 75935958 75936134 -76601125 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1164 714 166 23 11 chr5 75936147 75936324 -76600935 + (CA)n Simple_repeat Simple_repeat 1 179 0 9 1164 296 200 106 59 chr5 75936643 75936728 -76600531 - MIR SINE MIR -109 153 65 9 1164 222 37 0 0 chr5 75937046 75937073 -76600186 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 9 1164 468 149 0 0 chr5 75937319 75937413 -76599846 + (TC)n Simple_repeat Simple_repeat 2 95 0 9 1164 370 311 0 0 chr5 75937633 75937723 -76599536 + PB1D10 SINE Alu 18 107 -10 9 1164 952 163 7 0 chr5 75937754 75937901 -76599358 + B1_Mur3 SINE Alu 1 148 -1 9 1164 635 84 11 0 chr5 75937901 75937996 -76599263 + (GGAAA)n Simple_repeat Simple_repeat 2 97 0 9 1164 1147 259 87 26 chr5 75938074 75938440 -76598819 + MTD LTR MaLR 3 396 -23 9 1164 243 79 0 0 chr5 75938440 75938478 -76598781 + (CACAA)n Simple_repeat Simple_repeat 3 40 0 9 1164 1147 259 87 26 chr5 75938478 75938492 -76598767 + MTD LTR MaLR 397 406 -13 9 1164 1158 88 0 0 chr5 75938555 75938703 -76598556 + B1_Mus1 SINE Alu 1 148 0 9 1164 459 204 20 0 chr5 75938708 75938806 -76598453 + ID_B1 SINE B4 123 222 -2 9 1164 330 325 0 86 chr5 75938820 75938948 -76598311 + PB1D10 SINE Alu 1 117 0 9 1164 465 216 262 6 chr5 75938950 75939122 -76598137 + B3 SINE B2 1 216 0 9 1164 24 0 0 0 chr5 75939129 75939153 -76598106 + AT_rich Low_complexity Low_complexity 1 24 0 9 1164 313 256 13 0 chr5 75939162 75939240 -76598019 + ID4_ SINE ID 2 80 -3 9 1164 521 261 14 21 chr5 75940245 75940386 -76596873 - ID_B1 SINE B4 0 224 85 9 1164 245 299 68 11 chr5 75941491 75941579 -76595680 + L2 LINE L2 2782 2874 -545 9 1164 256 109 43 0 chr5 75941820 75941866 -76595393 - PB1D10 SINE Alu 0 117 70 9 1164 495 136 0 0 chr5 75941907 75942017 -76595242 + (TC)n Simple_repeat Simple_repeat 2 111 0 9 1164 294 265 0 121 chr5 75942017 75942133 -76595126 - ID_B1 SINE B4 -19 205 104 9 1164 26 50 0 0 chr5 75942146 75942186 -76595073 + AT_rich Low_complexity Low_complexity 1 40 0 9 1164 252 0 0 0 chr5 75942186 75942214 -76595045 + (TC)n Simple_repeat Simple_repeat 2 29 0 9 1164 225 0 0 0 chr5 75942214 75942238 -76595021 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1164 537 262 0 132 chr5 75942239 75942406 -76594853 - RSINE1 SINE B4 -18 147 3 9 1164 199 200 211 14 chr5 75942601 75942672 -76594587 + L2a LINE L2 3307 3391 -35 9 1164 365 244 3 11 chr5 75942973 75943075 -76594184 - ID4 SINE ID -45 107 9 9 1164 225 0 0 0 chr5 75943157 75943182 -76594077 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 9 1164 507 195 204 0 chr5 75943182 75943295 -76593964 - PB1D9 SINE Alu -12 136 1 9 1164 244 227 40 13 chr5 75943324 75943400 -76593859 + (CACCAT)n Simple_repeat Simple_repeat 1 78 0 9 1164 643 255 12 0 chr5 75944077 75944238 -76593021 - RSINE1 SINE B4 0 165 3 9 1164 1285 118 0 20 chr5 75944375 75944574 -76592685 - B2_Mm2 SINE B2 0 195 1 9 1164 647 223 7 54 chr5 75944575 75944722 -76592537 - B1_Mur1 SINE Alu 0 149 10 9 1164 902 210 97 0 chr5 75944727 75944913 -76592346 - ID_B1 SINE B4 -18 206 3 9 1164 357 367 64 64 chr5 75945612 75945941 -76591318 + MER102b DNA MER1_type 2 330 -11 9 1164 2784 79 96 0 chr5 75946150 75946555 -76590704 - L1_Mur1 LINE L1 -792 5094 4651 9 1164 4374 73 9 0 chr5 75946555 75947127 -76590132 + Lx3_Mus LINE L1 6433 7009 0 9 1164 1246 251 76 76 chr5 75947535 75947869 -76589390 - MTD LTR MaLR -23 396 55 9 1164 2028 119 50 9 chr5 75947869 75948209 -76589050 + Lx3A LINE L1 6614 6967 -14 9 1164 285 29 0 0 chr5 75948209 75948243 -76589016 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 9 1164 1246 251 76 76 chr5 75948243 75948303 -76588956 - MTD LTR MaLR -365 54 2 9 1164 2334 99 12 12 chr5 75948462 75948789 -76588470 + ORR1A2 LTR MaLR 1 327 0 9 1164 980 249 9 32 chr5 75948821 75949037 -76588222 - B3 SINE B2 -5 211 1 9 1164 765 254 21 29 chr5 75949051 75949260 -76587999 - B3A SINE B2 0 216 7 9 1164 387 0 0 0 chr5 75949373 75949416 -76587843 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1164 1266 90 0 0 chr5 75949499 75949677 -76587582 + (TCTCC)n Simple_repeat Simple_repeat 3 180 0 9 1164 222 257 0 167 chr5 75949737 75949821 -76587438 - PB1 SINE Alu -57 70 1 9 1164 231 356 0 27 chr5 75949828 75949903 -76587356 - RSINE1 SINE B4 -91 74 2 9 1164 218 333 13 0 chr5 75950584 75950659 -76586600 - ID4 SINE ID -6 77 2 9 1164 304 268 65 89 chr5 75950739 75950857 -76586402 + B4A SINE B4 42 156 -136 9 1164 498 204 25 66 chr5 75950857 75950978 -76586281 + PB1D9 SINE Alu 2 117 -3 9 1164 228 274 203 31 chr5 75950868 75950996 -76586263 + B4A SINE B4 97 246 -46 9 1164 664 120 17 8 chr5 75951306 75951424 -76585835 + (TTCC)n Simple_repeat Simple_repeat 3 121 0 9 1164 540 158 137 10 chr5 75951434 75951536 -76585723 - B1_Mur3 SINE Alu 0 149 35 9 1164 277 321 79 18 chr5 75951435 75951549 -76585710 - B4 SINE B4 -67 225 105 9 1164 426 261 0 107 chr5 75951959 75952109 -76585150 + MER20 DNA MER1_type 41 174 -45 9 1164 28 79 0 0 chr5 75952182 75952245 -76585014 + AT_rich Low_complexity Low_complexity 1 63 0 9 1164 231 356 134 8 chr5 75952516 75952635 -76584624 + MIRb SINE MIR 27 160 -108 9 1164 278 268 9 0 chr5 75952654 75952766 -76584493 + (TG)n Simple_repeat Simple_repeat 1 113 0 9 1164 513 71 0 0 chr5 75952765 75952835 -76584424 + (GA)n Simple_repeat Simple_repeat 1 70 0 9 1164 352 266 68 99 chr5 75952852 75953044 -76584215 - MER20 DNA MER1_type 0 219 34 9 1164 453 169 0 0 chr5 75953129 75953212 -76584047 + (CCA)n Simple_repeat Simple_repeat 1 83 0 9 1164 1351 234 76 141 chr5 75954078 75954526 -76582733 + MTD LTR MaLR 1 419 0 9 1164 365 248 38 38 chr5 75954562 75954667 -76582592 + B1F1 SINE Alu 5 109 -40 9 1164 304 303 38 83 chr5 75954667 75954689 -76582570 + ID_B1 SINE B4 102 206 -18 9 1164 878 137 217 11 chr5 75954926 75955110 -76582149 - URR1A DNA MER1_type 0 226 5 9 1164 297 333 49 16 chr5 75955702 75955824 -76581435 + MIRc SINE MIR 4 129 -139 9 1164 371 294 101 50 chr5 75955864 75956043 -76581216 - MIRb SINE MIR -10 258 71 9 1164 442 307 32 72 chr5 75956300 75956329 -76580930 + Lx7 LINE L1 5588 5610 -569 9 1164 866 91 19 19 chr5 75956329 75956486 -76580773 + (GGGA)n Simple_repeat Simple_repeat 4 160 0 1 1164 841 261 53 7 chr5 75956486 75956789 -76580470 + Lx7 LINE L1 5547 5896 -1577 9 1164 525 204 19 0 chr5 75957071 75957174 -76580085 - U6 snRNA snRNA -1 106 2 1 1164 711 35 0 0 chr5 75957182 75957268 -76579991 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1 1164 324 0 0 0 chr5 75957540 75957576 -76579683 + (CCA)n Simple_repeat Simple_repeat 1 36 0 1 1164 768 188 20 27 chr5 75957769 75957917 -76579342 + B1_Mur3 SINE Alu 2 148 -1 1 1164 871 273 126 9 chr5 75957981 75958314 -76578945 + MTEb LTR MaLR 4 375 -4 1 1164 798 227 85 25 chr5 75958336 75958535 -76578724 + B3 SINE B2 1 211 -5 1 1164 360 0 0 0 chr5 75958549 75958589 -76578670 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1 1164 525 226 12 99 chr5 75958598 75958760 -76578499 + B1_Mur2 SINE Alu 1 148 -1 1 1164 1991 155 3 6 chr5 75958786 75959111 -76578148 + ORR1A1 LTR MaLR 1 324 -22 1 1164 253 228 116 80 chr5 75959347 75959485 -76577774 + MIR SINE MIR 41 183 -79 1 1164 288 292 0 0 chr5 75959730 75959802 -76577457 - B1F SINE Alu -26 123 52 1 1164 508 308 33 79 chr5 75960235 75960450 -76576809 - ID_B1 SINE B4 -3 221 17 1 1164 553 291 0 54 chr5 75960488 75960655 -76576604 - RSINE1 SINE B4 0 165 8 1 1164 432 239 142 0 chr5 75960849 75960962 -76576297 + B1F1 SINE Alu 11 139 -10 1 1164 266 200 64 39 chr5 75962017 75962095 -76575164 - ID4 SINE ID -1 82 3 1 1164 1207 61 0 26 chr5 75962121 75962273 -76574986 + B1_Mus1 SINE Alu 1 148 0 1 1164 253 348 25 42 chr5 75962301 75962421 -76574838 - PB1 SINE Alu -9 118 1 1 1164 719 196 17 0 chr5 75962472 75962607 -76574652 + B1_Mur1 SINE Alu 9 148 -1 1 1164 272 318 70 113 chr5 75962486 75962628 -76574631 + B4 SINE B4 111 246 -46 1 1164 279 0 0 0 chr5 75962673 75962704 -76574555 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1164 463 308 13 33 chr5 75962917 75963068 -76574191 + ID_B1 SINE B4 2 149 -75 1 1164 334 258 120 40 chr5 75963192 75963317 -76573942 + MIR SINE MIR 95 229 -33 1 1164 1185 8 0 0 chr5 75963597 75963731 -76573528 + (GGGAGA)n Simple_repeat Simple_repeat 3 136 0 1 1164 371 312 85 53 chr5 75963739 75964021 -76573238 - B4 SINE B4 -21 271 3 1 1164 243 0 0 0 chr5 75965429 75965456 -76571803 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1164 427 214 137 112 chr5 75966198 75966403 -76570856 + B3 SINE B2 2 211 -5 1 1164 347 289 109 34 chr5 75966571 75966718 -76570541 + L1ME4a LINE L1 5960 6117 -7 1 1164 410 272 78 35 chr5 75966733 75966874 -76570385 + B1F SINE Alu 1 147 -2 1 1164 714 176 24 0 chr5 75966893 75967018 -76570241 - B1_Mur1 SINE Alu -21 128 1 1 1164 405 287 160 60 chr5 75967018 75967135 -76570124 - MT2B LTR ERVL -444 157 21 1 1164 348 354 141 51 chr5 75967021 75967193 -76570066 + MLT1K LTR MaLR 9 184 -411 1 1164 646 204 121 0 chr5 75967193 75967325 -76569934 - B1_Mur1 SINE Alu -1 148 1 1 1164 348 354 141 51 chr5 75967325 75967465 -76569794 + MLT1K LTR MaLR 185 348 -247 1 1164 378 0 0 0 chr5 75967542 75967584 -76569675 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1164 459 314 41 64 chr5 75968033 75968251 -76569008 + MamRep38 DNA hAT 82 294 -1 1 1164 327 310 37 51 chr5 75968251 75968400 -76568859 + L2c LINE L2 3211 3380 -7 1 1164 342 206 0 0 chr5 75969175 75969248 -76568011 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 1 1164 398 289 47 55 chr5 75969339 75969467 -76567792 + RSINE1 SINE B4 5 131 -34 1 1164 210 119 48 0 chr5 75969477 75969519 -76567740 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 1 1164 389 229 9 86 chr5 75969780 75969885 -76567374 + MT2B LTR ERVL 161 257 -344 1 1164 793 36 117 0 chr5 75969796 75969907 -76567352 + B1_Mus1 SINE Alu 14 137 -11 1 1164 282 29 0 0 chr5 75969907 75969942 -76567317 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1164 759 217 13 13 chr5 75969953 75970107 -76567152 + B3 SINE B2 59 212 -4 1 1164 216 0 0 0 chr5 75972097 75972121 -76565138 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1164 324 0 0 0 chr5 75973110 75973146 -76564113 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1164 442 312 14 7 chr5 75975067 75975206 -76562053 + MIR SINE MIR 7 146 -116 1 1164 566 288 180 41 chr5 75976432 75976731 -76560528 - L1MB3 LINE L1 -1 6182 5833 1 1164 361 264 45 9 chr5 75976731 75976842 -76560417 - PB1D10 SINE Alu -1 116 2 1 1164 566 288 180 41 chr5 75976842 75976958 -76560301 - L1MB3 LINE L1 -351 5832 5709 1 1164 248 313 39 52 chr5 75977589 75977744 -76559515 + L3b LINE CR1 42 194 -288 1 1164 26 30 0 0 chr5 75977777 75977810 -76559449 + AT_rich Low_complexity Low_complexity 1 33 0 1 1164 233 29 0 29 chr5 75978387 75978422 -76558837 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1164 1262 47 0 0 chr5 75978426 75978574 -76558685 - B1_Mus1 SINE Alu 0 148 1 1 1164 207 0 0 0 chr5 75979152 75979175 -76558084 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1164 21 0 0 0 chr5 75980357 75980378 -76556881 + AT_rich Low_complexity Low_complexity 1 21 0 1 1164 399 275 47 53 chr5 75980428 75980578 -76556681 - B1F1 SINE Alu 0 149 1 1 1164 1062 46 46 0 chr5 75981126 75981256 -76556003 + B1_Mm SINE Alu 3 138 -9 1 1164 21 0 0 0 chr5 75981256 75981277 -76555982 + GC_rich Low_complexity Low_complexity 1 21 0 1 1164 846 123 114 34 chr5 75981739 75981915 -76555344 - B2_Mm2 SINE B2 -3 192 3 1 1164 1409 231 95 16 chr5 75982631 75983009 -76554250 - MTD LTR MaLR -11 408 1 1 1164 629 258 8 0 chr5 75983161 75983281 -76553978 - ID_B1 SINE B4 -20 204 84 1 1164 243 193 70 0 chr5 75984658 75984715 -76552544 - L1M7 LINE L1 -5055 1163 1103 1 1164 248 269 75 0 chr5 75984748 75984815 -76552444 - B1F SINE Alu -73 76 5 1 1164 687 188 80 0 chr5 75984870 75985008 -76552251 - B1_Mur1 SINE Alu 0 149 1 1 1164 473 274 81 0 chr5 75985012 75985136 -76552123 - ID_B1 SINE B4 0 224 91 1 1164 207 0 0 0 chr5 75986328 75986351 -76550908 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1164 524 184 24 73 chr5 75986607 75986730 -76550529 + B1_Mur2 SINE Alu 1 117 -32 1 1164 207 0 0 0 chr5 75986736 75986759 -76550500 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 1 1164 307 325 38 19 chr5 75988074 75988231 -76549028 + MER5A DNA MER1_type 26 185 -4 1 1164 190 359 60 52 chr5 75988709 75988959 -76548300 + L2b LINE L2 3083 3334 -41 1 1164 702 227 107 16 chr5 75989415 75989620 -76547639 + B3A SINE B2 1 203 -13 1 1164 236 136 34 0 chr5 75989639 75989698 -76547561 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 1 1164 254 297 25 67 chr5 75990042 75990074 -76547185 - ID_B1 SINE B4 -110 114 1 1 1164 301 235 0 69 chr5 75990074 75990161 -76547098 - BC1_Mm scRNA scRNA -2 81 1 1 1164 615 329 93 20 chr5 75991544 75991953 -76545306 + L1MB3 LINE L1 5732 6170 -13 1 1164 225 0 0 0 chr5 75992141 75992166 -76545093 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 1 1164 184 150 0 70 chr5 75992687 75992730 -76544529 - MIRm SINE MIR -28 248 209 1 1164 481 300 30 36 chr5 75993261 75993427 -76543832 - RSINE1 SINE B4 0 165 1 1 1164 273 234 129 47 chr5 75993489 75993682 -76543577 - ID_B1 SINE B4 -12 212 4 1 1164 326 274 81 57 chr5 75994200 75994324 -76542935 + PB1 SINE Alu 1 127 0 1 1164 320 265 123 38 chr5 75995527 75995633 -76541626 - Tigger5 DNA MER2_type -55 2351 2237 1 1164 21 0 0 0 chr5 75995649 75995670 -76541589 + AT_rich Low_complexity Low_complexity 1 21 0 1 1164 384 22 0 0 chr5 75997555 75997600 -76539659 + (T)n Simple_repeat Simple_repeat 1 45 0 1 1164 288 0 0 0 chr5 75998079 75998111 -76539148 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1164 276 0 44 22 chr5 75998357 75998402 -76538857 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 1 1164 195 69 0 0 chr5 75998538 75998567 -76538692 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1 1164 559 214 16 49 chr5 75998567 75998690 -76538569 - PB1D9 SINE Alu -1 119 1 1 1164 390 297 138 23 chr5 75998704 75999179 -76538080 - L1MB4 LINE L1 0 6180 5662 1 1164 204 128 0 60 chr5 75999712 75999762 -76537497 + G-rich Low_complexity Low_complexity 6 52 0 1 1164 503 338 31 44 chr5 75999774 76000000 -76537259 - B4A SINE B4 -14 278 56 1 1164 339 25 0 0 chr5 76001034 76001074 -76536185 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1164 390 57 0 0 chr5 76001074 76001127 -76536132 + (GGGA)n Simple_repeat Simple_repeat 3 55 0 2 1164 535 246 0 0 chr5 76001141 76001251 -76536008 - PB1D9 SINE Alu -9 111 2 3 1164 218 353 145 8 chr5 76001840 76001957 -76535302 - RSINE1 SINE B4 -9 156 24 4 1164 587 109 28 44 chr5 76002281 76002463 -76534796 + (TA)n Simple_repeat Simple_repeat 1 179 0 5 1164 340 240 26 46 chr5 76004744 76004842 -76532417 + B4 SINE B4 2 99 -193 6 1164 655 286 5 55 chr5 76004842 76005042 -76532217 + B3A SINE B2 1 190 -8 7 1164 521 130 186 47 chr5 76005111 76005240 -76532019 + B1_Mur1 SINE Alu 1 147 -2 8 1164 468 309 44 33 chr5 76006518 76006699 -76530560 + B3A SINE B2 1 183 -15 9 1164 21 36 0 0 chr5 76006722 76006750 -76530509 + AT_rich Low_complexity Low_complexity 1 28 0 1 1164 291 28 0 0 chr5 76007530 76007566 -76529693 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1 1164 290 241 0 0 chr5 76007624 76007678 -76529581 - L2a LINE L2 -2 3424 3371 1 1164 261 0 0 0 chr5 76008373 76008402 -76528857 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1164 215 308 92 0 chr5 76009467 76009532 -76527727 + BC1_Mm scRNA scRNA 13 83 -69 1 1164 422 281 155 19 chr5 76009590 76009797 -76527462 - Charlie5 DNA MER1_type 0 2624 2390 1 1164 388 250 34 11 chr5 76009961 76010050 -76527209 - PB1D7 SINE Alu -15 105 15 1 1164 693 228 90 20 chr5 76010783 76010984 -76526275 + ID_B1 SINE B4 1 215 -9 1 1164 189 0 0 0 chr5 76011636 76011657 -76525602 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 1 1164 228 219 23 47 chr5 76012290 76012376 -76524883 + T-rich Low_complexity Low_complexity 5 88 0 1 1164 225 178 0 0 chr5 76013095 76013140 -76524119 + (CATA)n Simple_repeat Simple_repeat 2 46 0 2 1164 369 0 0 0 chr5 76013252 76013293 -76523966 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1164 355 281 118 123 chr5 76013649 76013998 -76523261 - ORR1E LTR MaLR -12 347 1 2 1164 478 203 0 17 chr5 76014047 76014116 -76523143 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1164 970 104 24 120 chr5 76014116 76014324 -76522935 - B2_Mm2 SINE B2 -6 189 2 2 1164 478 203 0 17 chr5 76014324 76014374 -76522885 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1164 700 184 230 0 chr5 76014389 76014563 -76522696 - B3 SINE B2 0 216 3 2 1164 658 317 35 5 chr5 76015270 76015473 -76521786 + B4A SINE B4 1 209 -83 2 1164 663 112 112 0 chr5 76015499 76015606 -76521653 - B1_Mur4 SINE Alu -31 119 1 2 1164 447 19 0 0 chr5 76015648 76015700 -76521559 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1164 297 262 34 45 chr5 76015780 76015868 -76521391 + MIRb SINE MIR 177 263 -5 3 1164 265 244 111 118 chr5 76017615 76017768 -76519491 - RSINE1 SINE B4 0 165 14 3 1164 202 344 40 30 chr5 76017768 76017867 -76519392 - MIR SINE MIR -103 159 60 3 1164 460 155 37 12 chr5 76018720 76018883 -76518376 + (TG)n Simple_repeat Simple_repeat 2 168 0 3 1164 630 0 0 0 chr5 76019495 76019565 -76517694 + (GA)n Simple_repeat Simple_repeat 1 70 0 3 1164 304 289 113 113 chr5 76020052 76020309 -76516950 - ORR1E LTR MaLR -15 344 88 3 1164 919 163 203 5 chr5 76020646 76020707 -76516552 - MT2A LTR ERVL 0 533 469 3 1164 378 100 0 0 chr5 76020707 76020767 -76516492 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1164 919 163 203 5 chr5 76020767 76020927 -76516332 - MT2A LTR ERVL -65 468 268 3 1164 776 164 8 0 chr5 76020926 76021054 -76516205 - MT2A LTR ERVL -401 132 4 3 1164 476 218 39 11 chr5 76021075 76021177 -76516082 + B1_Mur3 SINE Alu 1 106 -44 3 1164 324 0 0 0 chr5 76021276 76021312 -76515947 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1165 433 238 229 17 chr5 76022398 76022573 -76514686 + ID_B1 SINE B4 3 214 -10 4 1165 387 0 0 0 chr5 76023411 76023454 -76513805 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1165 771 241 41 0 chr5 76025419 76025589 -76511670 + B3 SINE B2 34 210 -6 4 1165 576 239 14 42 chr5 76026216 76026360 -76510899 - RSINE1 SINE B4 -24 141 2 4 1165 311 0 0 25 chr5 76026708 76026748 -76510511 + (TTA)n Simple_repeat Simple_repeat 2 40 0 4 1165 648 267 141 85 chr5 76027363 76027419 -76509840 - B4A SINE B4 -6 286 220 4 1165 1047 149 155 25 chr5 76027419 76027619 -76509640 + URR1A DNA MER1_type 1 226 0 4 1165 648 267 141 85 chr5 76027619 76027832 -76509427 - B4A SINE B4 -73 219 2 4 1165 1171 121 32 27 chr5 76027966 76028153 -76509106 + B2_Mm2 SINE B2 1 188 -7 4 1165 639 260 87 16 chr5 76028342 76028526 -76508733 + ID_B1 SINE B4 12 208 -16 4 1165 531 332 36 61 chr5 76030024 76030271 -76506988 + Charlie13b DNA Charlie 25 265 -247 4 1165 759 189 200 54 chr5 76030415 76030600 -76506659 - URR1A DNA MER1_type -14 212 1 5 1165 1206 74 0 0 chr5 76030782 76030931 -76506328 - B1_Mur4 SINE Alu 0 150 2 5 1165 351 0 0 0 chr5 76031866 76031905 -76505354 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1165 351 96 0 0 chr5 76032025 76032077 -76505182 + (TAG)n Simple_repeat Simple_repeat 2 53 0 5 1165 209 57 0 28 chr5 76032077 76032113 -76505146 + (TTA)n Simple_repeat Simple_repeat 3 37 0 5 1165 556 278 12 41 chr5 76032179 76032348 -76504911 - RSINE1 SINE B4 0 165 2 5 1165 233 0 62 0 chr5 76035613 76035645 -76501614 + (TATG)n Simple_repeat Simple_repeat 3 36 0 5 1165 339 25 0 0 chr5 76036263 76036303 -76500956 + (TAGG)n Simple_repeat Simple_repeat 4 43 0 5 1165 567 43 0 0 chr5 76036305 76036375 -76500884 + (GGGA)n Simple_repeat Simple_repeat 4 73 0 5 1165 261 282 194 24 chr5 76037614 76037861 -76499398 - L1MA4A LINE L1 -122 6181 5893 5 1165 300 286 65 28 chr5 76038415 76038523 -76498736 - L1M5 LINE L1 -2947 3199 3088 6 1165 2646 31 10 236 chr5 76038598 76039102 -76498157 - RLTR10 LTR ERVK 0 390 1 6 1165 10272 21 1 1 chr5 76039104 76040992 -76496267 - RLTR10-int LTR ERVK -3 1984 41 6 1165 2672 34 10 233 chr5 76041002 76041504 -76495755 - RLTR10 LTR ERVK 0 390 1 6 1165 204 149 0 0 chr5 76044344 76044391 -76492868 + (T)n Simple_repeat Simple_repeat 1 47 0 6 1165 243 0 0 0 chr5 76044578 76044605 -76492654 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1165 189 0 0 0 chr5 76045213 76045234 -76492025 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1165 217 318 88 26 chr5 76046145 76046258 -76491001 - MIRb SINE MIR -72 196 77 6 1165 390 309 133 30 chr5 76046965 76047302 -76489957 - Charlie4a DNA MER1_type -3 505 134 6 1165 186 43 0 0 chr5 76047470 76047493 -76489766 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 6 1165 211 182 71 94 chr5 76047648 76047733 -76489526 + RSINE1 SINE B4 83 165 0 6 1165 301 322 0 0 chr5 76048222 76048312 -76488947 - MLT1J LTR MaLR -340 172 83 6 1165 210 143 0 0 chr5 76048323 76048358 -76488901 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1165 183 42 0 0 chr5 76051430 76051454 -76485805 + (TTG)n Simple_repeat Simple_repeat 2 25 0 7 1165 241 184 20 0 chr5 76051711 76051760 -76485499 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1165 24 0 0 0 chr5 76052449 76052473 -76484786 + AT_rich Low_complexity Low_complexity 1 24 0 7 1165 23 54 0 0 chr5 76052719 76052756 -76484503 + AT_rich Low_complexity Low_complexity 1 37 0 7 1165 695 257 40 65 chr5 76053496 76053696 -76483563 + B4 SINE B4 98 292 0 7 1165 1488 136 14 0 chr5 76054393 76054614 -76482645 - URR1B DNA MER1_type -1 224 1 7 1165 1598 236 85 10 chr5 76054984 76055373 -76481886 - MTD LTR MaLR -1 418 1 7 1165 1052 264 48 48 chr5 76055970 76056260 -76480999 + B4A SINE B4 1 290 -2 7 1165 1053 160 0 0 chr5 76056310 76056857 -76480402 + (CA)n Simple_repeat Simple_repeat 1 547 0 7 1165 355 310 126 38 chr5 76056913 76057231 -76480028 - L1MEg LINE L1 -4867 1217 872 8 1165 214 307 93 0 chr5 76057778 76057853 -76479406 - ID4_ SINE ID 0 83 2 8 1165 894 124 0 14 chr5 76058990 76059137 -76478122 + B1_Mur4 SINE Alu 6 150 0 8 1165 701 142 0 52 chr5 76059352 76059486 -76477773 + MT2B LTR ERVL 1 127 -406 8 1165 2472 193 134 40 chr5 76059486 76060084 -76477175 - RMER1B Other Other -15 1051 398 8 1165 756 289 31 65 chr5 76060187 76060488 -76476771 + MT2B LTR ERVL 274 546 -55 8 1165 468 163 0 0 chr5 76060488 76060574 -76476685 + (TCTCTG)n Simple_repeat Simple_repeat 4 89 0 8 1165 254 33 0 0 chr5 76060574 76060604 -76476655 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 8 1165 251 222 37 0 chr5 76060604 76060639 -76476620 + MLT2B5 LTR ERVL 472 509 -46 8 1165 351 0 0 0 chr5 76060639 76060678 -76476581 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1165 322 67 0 0 chr5 76060678 76060723 -76476536 + MT2B LTR ERVL 489 533 0 8 1165 366 310 0 42 chr5 76060723 76060841 -76476418 - MIR SINE MIR -149 113 1 8 1165 555 16 0 0 chr5 76061334 76061398 -76475861 + (TC)n Simple_repeat Simple_repeat 2 65 0 9 1165 922 260 24 99 chr5 76061399 76061613 -76475646 + ORR1D1 LTR MaLR 9 201 -173 9 1165 3492 23 5 0 chr5 76061613 76062007 -76475252 + MTA_Mm LTR MaLR 1 396 0 9 1165 922 260 24 99 chr5 76062007 76062125 -76475134 + ORR1D1 LTR MaLR 202 316 -58 9 1165 851 254 199 7 chr5 76062558 76062855 -76474404 + Lx8 LINE L1 7113 7466 -7 9 1165 200 264 89 33 chr5 76063020 76063110 -76474149 - MIRb SINE MIR -51 217 123 9 1165 25 0 0 0 chr5 76063478 76063503 -76473756 + AT_rich Low_complexity Low_complexity 1 25 0 9 1165 957 240 28 0 chr5 76063507 76063724 -76473535 - MER2 DNA MER2_type -3 342 120 9 1165 423 0 0 0 chr5 76063752 76063799 -76473460 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1165 870 83 0 0 chr5 76063801 76063934 -76473325 + (GA)n Simple_repeat Simple_repeat 2 134 0 9 1165 329 221 0 0 chr5 76063935 76064003 -76473256 - B4A SINE B4 -220 72 5 9 1165 229 261 53 64 chr5 76064829 76064923 -76472336 + L4 LINE RTE 1235 1327 -702 1 1165 349 216 88 0 chr5 76065492 76065594 -76471665 + Tigger13a DNA MER2_type 126 236 -535 1 1165 1707 152 11 95 chr5 76065701 76066079 -76471180 + ORR1B1 LTR MaLR 41 386 -8 1 1165 558 327 38 59 chr5 76066143 76066484 -76470775 + Tigger13a DNA MER2_type 382 715 -56 1 1165 345 262 0 96 chr5 76067045 76067180 -76470079 - MTEa LTR MaLR -254 125 4 1 1165 739 285 69 17 chr5 76067718 76067950 -76469309 + B4 SINE B4 19 262 -30 1 1165 189 0 0 0 chr5 76067961 76067982 -76469277 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 1 1165 470 17 0 17 chr5 76068553 76068613 -76468646 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 1 1165 648 53 116 0 chr5 76068615 76068710 -76468549 - B1_Mus1 SINE Alu -13 135 30 1 1165 207 0 0 0 chr5 76068777 76068800 -76468459 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 1 1165 200 390 32 8 chr5 76070087 76070211 -76467048 - L2b LINE L2 -24 3351 3225 1 1165 260 202 184 20 chr5 76070406 76070528 -76466731 + MIRc SINE MIR 96 229 -39 1 1165 2588 41 77 12 chr5 76071071 76071395 -76465864 + ORR1A1 LTR MaLR 1 345 -1 1 1165 845 244 77 23 chr5 76072047 76072307 -76464952 - MLT2B4 LTR ERVL -271 285 12 1 1165 220 250 87 14 chr5 76072540 76072609 -76464650 - L2 LINE L2 -539 2880 2807 1 1165 400 202 0 37 chr5 76072614 76072696 -76464563 - ID4_ SINE ID -4 79 1 1 1165 451 270 54 31 chr5 76072726 76072856 -76464403 + RSINE1 SINE B4 11 143 -22 1 1165 356 56 37 0 chr5 76073946 76074000 -76463259 + (TTTTTG)n Simple_repeat Simple_repeat 6 61 0 1 1165 508 200 208 0 chr5 76074000 76074120 -76463139 - B1_Mur1 SINE Alu 0 149 5 1 1165 314 58 42 28 chr5 76074388 76074459 -76462800 + (TTTTTG)n Simple_repeat Simple_repeat 3 74 0 1 1165 2475 168 30 34 chr5 76074802 76075270 -76461989 - RMER4A LTR ERVK 0 466 1 1 1165 251 265 44 0 chr5 76075393 76075461 -76461798 - L1ME3A LINE L1 -180 5993 5923 1 1165 1044 98 0 0 chr5 76075586 76075853 -76461406 + (TC)n Simple_repeat Simple_repeat 1 267 0 1 1165 235 306 38 64 chr5 76075929 76076086 -76461173 + MLT1A LTR MaLR 34 186 -188 1 1165 612 229 121 11 chr5 76076062 76076252 -76461007 + ORR1E LTR MaLR 96 306 -53 1 1165 1364 307 97 43 chr5 76076668 76077733 -76459526 - L1ME3A LINE L1 -1467 4679 3558 1 1165 1358 51 0 11 chr5 76077898 76078078 -76459181 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1165 437 176 78 0 chr5 76078101 76078203 -76459056 + B1_Mur1 SINE Alu 35 144 -5 1 1165 287 327 55 18 chr5 76078221 76078330 -76458929 - ID_B1 SINE B4 -31 193 81 1 1165 515 213 84 32 chr5 76078365 76078382 -76458877 + ID_B1 SINE B4 62 224 0 1 1165 944 73 29 7 chr5 76078382 76078520 -76458739 + B1_Mm SINE Alu 6 146 -1 1 1165 408 88 0 0 chr5 76078650 76078707 -76458552 + (CCAA)n Simple_repeat Simple_repeat 3 59 0 1 1165 2226 153 11 16 chr5 76079027 76079406 -76457853 - RLTR14 LTR ERV1 -3 379 3 1 1165 327 277 63 11 chr5 76079944 76080039 -76457220 - B4 SINE B4 -191 101 2 1 1165 555 303 60 36 chr5 76080043 76080324 -76456935 - MLT1H2-int LTR MaLR -1003 406 119 1 1165 386 239 110 0 chr5 76080418 76080527 -76456732 - MLT1H2 LTR MaLR -8 481 361 1 1165 714 247 88 1 chr5 76081255 76081446 -76455813 - B3A SINE B2 -6 210 3 1 1165 814 165 18 0 chr5 76081453 76081617 -76455642 + CT-rich Low_complexity Low_complexity 3 169 0 1 1165 3002 177 86 23 chr5 76081620 76082269 -76454990 - RMER6C LTR ERVK 0 690 1 1 1165 918 241 70 39 chr5 76082269 76082589 -76454670 + MT2B LTR ERVL 211 588 -13 1 1165 1088 141 111 5 chr5 76082592 76082791 -76454468 + URR1A DNA MER1_type 7 226 0 1 1165 182 286 0 20 chr5 76083552 76083602 -76453657 + MIR SINE MIR 84 132 -76 1 1165 222 37 0 0 chr5 76084263 76084290 -76452969 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1165 1811 98 62 109 chr5 76084794 76085162 -76452097 + ORR1B1 LTR MaLR 43 393 -1 1 1165 234 91 0 0 chr5 76085289 76085322 -76451937 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1165 197 340 30 16 chr5 76086003 76086113 -76451146 + MIRb SINE MIR 8 124 -138 1 1165 480 322 0 0 chr5 76086275 76086421 -76450838 + ID_B1 SINE B4 79 224 0 1 1165 450 174 301 49 chr5 76086557 76086720 -76450539 - URR1A DNA MER1_type -22 204 1 1 1165 510 277 49 14 chr5 76086748 76086891 -76450368 + B1F2 SINE Alu 2 149 0 1 1165 1392 71 38 5 chr5 76087179 76087364 -76449895 + B2_Mm2 SINE B2 5 195 0 1 1165 215 273 0 15 chr5 76087779 76087846 -76449413 + G-rich Low_complexity Low_complexity 6 71 0 1 1165 237 331 72 8 chr5 76089063 76089188 -76448071 - MIRc SINE MIR -120 148 16 1 1165 758 182 267 0 chr5 76089282 76089458 -76447801 + URR1B DNA MER1_type 1 223 -2 1 1165 745 237 178 45 chr5 76089513 76089760 -76447499 + B4 SINE B4 2 281 -11 1 1165 272 204 0 0 chr5 76090617 76090666 -76446593 + MIRc SINE MIR 78 126 -142 1 1165 306 0 0 0 chr5 76091626 76091660 -76445599 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1165 231 218 0 0 chr5 76091660 76091715 -76445544 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1165 729 266 75 50 chr5 76091722 76092003 -76445256 - B4 SINE B4 -4 288 1 1 1165 207 268 14 14 chr5 76092521 76092593 -76444666 + GA-rich Low_complexity Low_complexity 1 72 0 1 1165 1433 205 108 38 chr5 76093020 76093390 -76443869 - MTD LTR MaLR -14 405 10 1 1165 202 83 0 77 chr5 76093407 76093459 -76443800 + (CAA)n Simple_repeat Simple_repeat 2 49 0 1 1165 198 244 73 49 chr5 76093681 76093763 -76443496 - MIRb SINE MIR -66 202 119 1 1165 236 224 7 0 chr5 76094420 76094492 -76442767 + B1F SINE Alu 9 81 -36 1 1165 247 354 0 0 chr5 76094654 76094736 -76442523 + RMER30 DNA MER1_type 2 83 -119 1 1165 219 103 0 0 chr5 76095053 76095092 -76442167 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1165 387 0 0 0 chr5 76096669 76096712 -76440547 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1165 592 204 21 42 chr5 76096743 76096886 -76440373 - B1F2 SINE Alu -9 140 1 1 1165 220 351 75 29 chr5 76097145 76097318 -76439941 + L2b LINE L2 3193 3373 -2 1 1165 219 139 0 0 chr5 76098687 76098723 -76438536 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1165 1295 134 9 0 chr5 76098750 76098966 -76438293 + L1_Mur2 LINE L1 3467 3684 -2193 1 1165 332 141 0 0 chr5 76098976 76099040 -76438219 + Lx LINE L1 6591 6654 0 1 1165 285 301 97 8 chr5 76099472 76099596 -76437663 + B1F SINE Alu 5 139 -10 1 1165 871 216 57 38 chr5 76099804 76100016 -76437243 - B3 SINE B2 0 216 1 1 1165 545 290 63 56 chr5 76100107 76100392 -76436867 - B4A SINE B4 -5 287 1 1 1165 312 289 148 0 chr5 76100461 76100596 -76436663 - L1MB1 LINE L1 -49 6285 6131 1 1165 577 200 74 0 chr5 76100840 76100975 -76436284 - B1F SINE Alu 0 149 5 1 1165 896 260 132 21 chr5 76100977 76101362 -76435897 - L1MB1 LINE L1 -127 6062 5643 1 1165 252 0 0 0 chr5 76101362 76101390 -76435869 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1165 601 279 83 119 chr5 76101390 76101466 -76435793 - L1MB1 LINE L1 -642 5661 5613 1 1165 378 0 0 0 chr5 76101466 76101508 -76435751 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 1 1165 820 230 51 0 chr5 76101508 76101704 -76435555 - ID_B1 SINE B4 -14 210 5 1 1165 1842 261 58 54 chr5 76101704 76102556 -76434703 - L1MB1 LINE L1 -691 5612 4717 1 1165 875 265 19 5 chr5 76102771 76102987 -76434272 + ID_B1 SINE B4 4 222 -2 1 1165 232 137 19 56 chr5 76103073 76103127 -76434132 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 1 1165 406 338 28 50 chr5 76103132 76103453 -76433806 + L1ME4a LINE L1 5605 5918 -206 1 1165 207 162 0 0 chr5 76103616 76103653 -76433606 + (CAA)n Simple_repeat Simple_repeat 2 38 0 1 1165 228 86 0 0 chr5 76103671 76103706 -76433553 + (TCTG)n Simple_repeat Simple_repeat 1 35 0 1 1165 315 71 0 0 chr5 76103707 76103749 -76433510 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1165 207 61 19 58 chr5 76103806 76103858 -76433401 + (TTTTTG)n Simple_repeat Simple_repeat 4 53 0 1 1165 677 306 53 29 chr5 76104480 76104820 -76432439 + L1MA5 LINE L1 5583 5930 -370 1 1165 1275 267 61 61 chr5 76104860 76105319 -76431940 - Lx8 LINE L1 -3 7470 7012 1 1165 534 57 0 0 chr5 76105326 76105396 -76431863 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1165 236 279 0 32 chr5 76105703 76105766 -76431493 + MTE2b LTR MaLR 283 343 -36 1 1165 229 246 115 0 chr5 76106285 76106346 -76430913 + Lx8 LINE L1 7168 7235 -238 1 1165 567 0 0 0 chr5 76106420 76106483 -76430776 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 1 1165 1202 75 0 0 chr5 76107025 76107172 -76430087 + B1_Mus1 SINE Alu 2 148 0 1 1165 650 235 112 14 chr5 76107186 76107471 -76429788 + RLTR15 LTR ERVK 30 342 -17 1 1165 384 22 0 0 chr5 76107541 76107586 -76429673 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1165 344 113 0 27 chr5 76107588 76107661 -76429598 + (CAGAGA)n Simple_repeat Simple_repeat 2 72 0 1 1165 478 398 47 9 chr5 76107777 76108119 -76429140 + MLT1J LTR MaLR 1 355 -157 1 1165 292 314 10 0 chr5 76108364 76108466 -76428793 - MIRb SINE MIR -10 258 156 1 1165 758 261 41 0 chr5 76108493 76108711 -76428548 - MLT1B LTR MaLR -2 388 162 1 1165 1335 246 30 21 chr5 76108817 76109153 -76428106 - MTE2a LTR MaLR 0 379 41 1 1165 2485 136 5 38 chr5 76109289 76109680 -76427579 + ORR1C1 LTR MaLR 1 378 0 1 1165 287 341 81 28 chr5 76109930 76110141 -76427118 - MER2 DNA MER2_type -123 222 1 1 1165 330 304 11 32 chr5 76111189 76111284 -76425975 + RSINE1 SINE B4 43 135 -30 1 1165 594 28 0 0 chr5 76111289 76111361 -76425898 + (CA)n Simple_repeat Simple_repeat 2 73 0 2 1165 475 272 96 0 chr5 76111381 76111517 -76425742 + B3 SINE B2 63 211 -5 2 1165 227 365 75 0 chr5 76111647 76111754 -76425505 - MIRb SINE MIR -83 185 71 1 1165 236 320 119 8 chr5 76113265 76113391 -76423868 - ORR1E LTR MaLR -168 191 52 2 1165 2243 142 55 18 chr5 76113462 76113842 -76423417 + ORR1B1 LTR MaLR 1 394 0 2 1165 297 312 107 23 chr5 76113907 76114038 -76423221 + MER2 DNA MER2_type 53 194 -151 2 1165 366 23 0 0 chr5 76114853 76114896 -76422363 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1165 296 333 36 57 chr5 76114905 76115045 -76422214 - L2a LINE L2 -1 3425 3289 2 1165 255 225 42 0 chr5 76115328 76115399 -76421860 + L1M2 LINE L1 5713 5786 -511 2 1165 201 192 0 37 chr5 76115490 76115544 -76421715 + CT-rich Low_complexity Low_complexity 2 53 0 2 1165 409 162 10 10 chr5 76115558 76115626 -76421633 + polypyrimidine Low_complexity Low_complexity 33 100 0 2 1165 600 14 0 0 chr5 76115626 76115695 -76421564 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 2 1165 409 162 10 10 chr5 76115695 76115726 -76421533 + polypyrimidine Low_complexity Low_complexity 2 32 0 2 1165 180 310 14 14 chr5 76115983 76116055 -76421204 - MIR SINE MIR -81 127 56 2 1165 315 258 0 0 chr5 76116144 76116210 -76421049 - MER20B DNA MER1_type -607 176 111 2 1165 717 337 61 12 chr5 76117015 76117342 -76419917 + MLT1A0 LTR MaLR 1 343 -22 2 1165 6674 166 28 16 chr5 76118545 76120193 -76417066 + Lx5 LINE L1 4686 6366 -684 2 1165 823 234 23 11 chr5 76120195 76120372 -76416887 + B3 SINE B2 38 216 0 2 1165 180 0 0 0 chr5 76120378 76120398 -76416861 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1165 869 266 136 19 chr5 76120435 76120810 -76416449 + MTD LTR MaLR 1 419 0 2 1165 315 0 0 0 chr5 76120884 76120919 -76416340 + (CTA)n Simple_repeat Simple_repeat 1 35 0 2 1165 201 147 0 29 chr5 76120920 76120955 -76416304 + (TAG)n Simple_repeat Simple_repeat 1 34 0 2 1165 695 222 62 5 chr5 76122516 76122711 -76414548 + ID_B1 SINE B4 1 206 -18 2 1165 1187 28 0 40 chr5 76122893 76123044 -76414215 + B1_Mm SINE Alu 1 145 -2 2 1165 877 202 97 10 chr5 76123084 76123279 -76413980 + B3 SINE B2 1 212 -4 2 1165 567 188 0 0 chr5 76124883 76125000 -76412259 + (TA)n Simple_repeat Simple_repeat 1 117 0 2 1165 268 154 121 15 chr5 76125315 76125381 -76411878 - B4 SINE B4 -218 74 2 2 1165 1284 98 0 0 chr5 76125384 76125840 -76411419 + (TG)n Simple_repeat Simple_repeat 1 456 0 2 1165 555 105 0 0 chr5 76126510 76126577 -76410682 + (TC)n Simple_repeat Simple_repeat 1 67 0 2 1165 243 0 0 0 chr5 76126577 76126604 -76410655 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1165 555 105 0 0 chr5 76126604 76126622 -76410637 + (TC)n Simple_repeat Simple_repeat 1 18 0 2 1165 198 0 0 0 chr5 76126624 76126646 -76410613 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 1165 218 345 103 20 chr5 76127701 76127851 -76409408 + MIRc SINE MIR 2 162 -106 2 1165 1280 305 80 19 chr5 76128276 76128916 -76408343 - L1MC1 LINE L1 -287 6046 5367 2 1165 27 0 0 0 chr5 76128925 76128952 -76408307 + AT_rich Low_complexity Low_complexity 1 27 0 2 1165 528 233 194 0 chr5 76129016 76129196 -76408063 - B3 SINE B2 0 216 2 2 1165 344 299 124 51 chr5 76129373 76129729 -76407530 - Charlie1 DNA MER1_type -37 2744 2363 2 1165 217 374 113 9 chr5 76130000 76130221 -76407038 + MIR SINE MIR 12 255 -7 2 1165 492 232 186 11 chr5 76131380 76131563 -76405696 - B3 SINE B2 -1 215 1 2 1165 618 269 50 61 chr5 76132260 76132330 -76404929 + L1MB7 LINE L1 5712 5786 -398 2 1165 207 0 0 0 chr5 76132330 76132353 -76404906 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1165 288 0 0 0 chr5 76132353 76132384 -76404875 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1165 618 269 50 61 chr5 76132384 76132410 -76404849 + L1MB7 LINE L1 5787 5808 -376 2 1165 1103 176 28 19 chr5 76132410 76132624 -76404635 + B3 SINE B2 1 216 0 2 1165 618 269 50 61 chr5 76132624 76132786 -76404473 + L1MB7 LINE L1 5809 5967 -217 2 1165 298 269 69 8 chr5 76133047 76133178 -76404081 + L1MEd LINE L1 976 1114 -5005 2 1165 433 309 45 45 chr5 76133198 76133486 -76403773 + B4A SINE B4 5 292 0 2 1165 874 281 105 39 chr5 76133973 76134384 -76402875 + L1MCa LINE L1 69 506 -6002 2 1165 578 337 52 67 chr5 76134754 76134930 -76402329 + MLT1B LTR MaLR 9 165 -225 2 1165 1192 139 5 0 chr5 76134930 76135132 -76402127 - Lx5 LINE L1 -3 7047 6845 2 1165 578 337 52 67 chr5 76135132 76135343 -76401916 + MLT1B LTR MaLR 166 390 0 2 1165 292 315 144 15 chr5 76136547 76136604 -76400655 - B1F SINE Alu 0 149 93 2 1165 1149 154 119 0 chr5 76136604 76136805 -76400454 + URR1A DNA MER1_type 1 225 -1 2 1165 292 315 144 15 chr5 76136805 76136879 -76400380 - B1F SINE Alu -57 92 1 2 1165 239 210 48 36 chr5 76137441 76137525 -76399734 + (CATATA)n Simple_repeat Simple_repeat 3 87 0 2 1165 7620 52 13 9 chr5 76137602 76138551 -76398708 + L1_Mus1 LINE L1 5616 6567 0 2 1165 180 111 0 0 chr5 76138555 76138582 -76398677 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2 1165 550 139 217 0 chr5 76138672 76138787 -76398472 + B1_Mus2 SINE Alu 6 145 -2 2 1165 252 0 0 0 chr5 76139206 76139234 -76398025 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 1165 422 18 0 18 chr5 76139234 76139290 -76397969 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1165 390 42 0 0 chr5 76141118 76141166 -76396093 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1165 243 257 0 54 chr5 76141928 76142002 -76395257 - ID4 SINE ID -9 74 5 2 1165 240 344 20 50 chr5 76143012 76143113 -76394146 + ID_B1 SINE B4 122 219 -5 2 1165 380 143 14 0 chr5 76143128 76143198 -76394061 + GA-rich Low_complexity Low_complexity 2 72 0 2 1165 206 309 44 0 chr5 76143266 76143334 -76393925 + MER5B DNA MER1_type 108 178 0 2 1165 231 36 0 0 chr5 76143901 76143929 -76393330 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1165 366 293 62 28 chr5 76143961 76144105 -76393154 - RSINE1 SINE B4 -15 150 2 2 1165 225 0 0 0 chr5 76144200 76144225 -76393034 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2 1165 506 16 16 0 chr5 76144349 76144412 -76392847 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1165 252 357 64 0 chr5 76144759 76144916 -76392343 + Kanga1 DNA Tc2 1418 1584 -161 2 1165 703 267 115 15 chr5 76145032 76145207 -76392052 - MLT1B LTR MaLR -16 374 185 2 1165 2253 139 10 90 chr5 76145207 76145618 -76391641 - ORR1C1 LTR MaLR 0 378 1 2 1165 703 267 115 15 chr5 76145618 76145712 -76391547 - MLT1B LTR MaLR -206 184 78 2 1165 423 311 61 108 chr5 76145713 76145991 -76391268 - MER2 DNA MER2_type 0 345 81 2 1165 370 276 8 75 chr5 76146095 76146228 -76391031 - MER2B DNA MER2_type -171 165 42 2 1165 244 263 25 62 chr5 76146235 76146316 -76390943 - MLT1B LTR MaLR -312 78 1 2 1165 180 77 0 0 chr5 76147282 76147308 -76389951 + (CACAA)n Simple_repeat Simple_repeat 4 29 0 2 1165 359 306 14 78 chr5 76147811 76147997 -76389262 + MLT1J2 LTR MaLR 263 443 -5 2 1165 342 153 35 23 chr5 76148228 76148315 -76388944 + CT-rich Low_complexity Low_complexity 4 91 0 2 1165 656 168 85 28 chr5 76148316 76148457 -76388802 - B1_Mur4 SINE Alu -1 149 1 2 1165 201 94 0 0 chr5 76148713 76148745 -76388514 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1165 433 326 19 52 chr5 76148800 76148955 -76388304 + MIRb SINE MIR 31 180 -88 2 1165 263 282 215 0 chr5 76149161 76149324 -76387935 - L1MA6 LINE L1 -96 6204 6007 2 1165 485 322 7 0 chr5 76149351 76149497 -76387762 - B1F SINE Alu -1 148 2 2 1165 350 268 31 0 chr5 76150971 76151068 -76386191 - PB1D10 SINE Alu -14 103 4 2 1165 321 282 13 0 chr5 76151364 76151442 -76385817 - MIR SINE MIR -159 103 25 2 1166 362 289 0 0 chr5 76153065 76153162 -76384097 + MLT1A1 LTR MaLR 300 396 -12 2 1166 22 0 0 0 chr5 76153645 76153667 -76383592 + AT_rich Low_complexity Low_complexity 1 22 0 2 1166 780 263 71 29 chr5 76155195 76155434 -76381825 + ORR1D2 LTR MaLR 6 254 -116 2 1166 186 43 0 0 chr5 76155628 76155651 -76381608 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2 1166 2930 167 77 20 chr5 76155982 76156570 -76380689 - Lx2B LINE L1 0 7000 6380 2 1166 840 26 26 0 chr5 76156586 76156703 -76380556 - L1Md_F3 LINE L1 -14 6570 6451 2 1166 3439 72 0 5 chr5 76156703 76157150 -76380109 - L1_Mm LINE L1 -885 4998 4554 2 1166 279 381 21 0 chr5 76157623 76157720 -76379539 + B4A SINE B4 33 131 -161 2 1166 271 281 21 10 chr5 76157876 76157973 -76379286 - B4A SINE B4 -194 98 1 2 1166 190 330 130 0 chr5 76157990 76158090 -76379169 - L2c LINE L2 -239 3148 3036 2 1166 1111 53 0 50 chr5 76160532 76160692 -76376567 - B2_Mm2 SINE B2 -42 153 2 2 1166 192 301 131 83 chr5 76161271 76161416 -76375843 + MIR SINE MIR 2 153 -109 2 1166 826 212 15 29 chr5 76161441 76161645 -76375614 - ORR1D2 LTR MaLR -2 368 168 2 1166 322 206 0 0 chr5 76161642 76161705 -76375554 - ORR1D2 LTR MaLR -306 64 2 2 1166 891 253 81 0 chr5 76162072 76162333 -76374926 - B4A SINE B4 -10 282 1 2 1166 1029 17 0 0 chr5 76162441 76162560 -76374699 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 2 1166 271 353 47 109 chr5 76163426 76163785 -76373474 + MLT1I LTR MaLR 75 411 0 2 1166 727 335 56 22 chr5 76165007 76165507 -76371752 + L1MD2 LINE L1 5621 6137 -222 2 1166 572 276 120 5 chr5 76167866 76168008 -76369251 - MER58A DNA MER1_type -1 223 62 2 1166 222 37 0 0 chr5 76168008 76168035 -76369224 + (TA)n Simple_repeat Simple_repeat 2 28 0 2 1166 572 276 120 5 chr5 76168035 76168092 -76369167 - MER58A DNA MER1_type -163 61 3 2 1166 239 354 25 17 chr5 76168589 76168707 -76368552 + MIRb SINE MIR 68 186 -82 2 1166 539 309 58 89 chr5 76169526 76169885 -76367374 - ORR1E LTR MaLR -11 348 1 2 1166 407 19 19 0 chr5 76169911 76169963 -76367296 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1166 370 244 78 0 chr5 76170376 76170466 -76366793 + LTR53 LTR ERVL 6 102 -417 3 1166 288 345 53 29 chr5 76170553 76170798 -76366461 + LTR53 LTR ERVL 244 494 -25 3 1166 311 312 92 50 chr5 76171160 76171443 -76365816 + L1ME2 LINE L1 5685 5979 -185 3 1166 207 0 0 0 chr5 76172276 76172299 -76364960 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 1166 414 0 0 0 chr5 76172299 76172344 -76364915 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1166 226 0 59 0 chr5 76172933 76172967 -76364292 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 3 1166 450 0 0 0 chr5 76173077 76173127 -76364132 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 3 1166 228 122 0 0 chr5 76173130 76173171 -76364088 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1166 304 343 127 14 chr5 76173204 76173417 -76363842 + Tigger15a DNA TcMar 187 423 -292 3 1166 636 296 26 13 chr5 76173464 76173618 -76363641 - B3A SINE B2 -42 156 1 3 1166 505 221 319 0 chr5 76173650 76173813 -76363446 - B3 SINE B2 0 216 2 3 1166 21 95 0 0 chr5 76174571 76174634 -76362625 + AT_rich Low_complexity Low_complexity 1 63 0 3 1166 245 125 56 22 chr5 76174993 76175083 -76362176 + (TA)n Simple_repeat Simple_repeat 2 94 0 3 1166 596 169 5 38 chr5 76175144 76175328 -76361931 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 1166 719 241 206 10 chr5 76175751 76176061 -76361198 - MLT1A LTR MaLR 0 374 4 3 1166 248 287 35 0 chr5 76176114 76176201 -76361058 + (TATATG)n Simple_repeat Simple_repeat 1 90 0 3 1166 858 276 25 25 chr5 76176207 76176452 -76360807 - B4A SINE B4 -6 286 42 3 1166 299 244 22 22 chr5 76176818 76176910 -76360349 - MER58D DNA MER1_type -10 376 285 3 1166 239 259 45 34 chr5 76177010 76177098 -76360161 + MER105 DNA DNA 114 202 -2 3 1166 243 186 51 0 chr5 76177402 76177461 -76359798 + L1M4 LINE L1 1071 1132 -5410 3 1166 538 253 7 20 chr5 76177470 76177619 -76359640 + B1F SINE Alu 1 147 -2 3 1166 858 276 66 33 chr5 76177679 76177952 -76359307 + B4A SINE B4 1 282 -10 3 1166 787 66 22 14 chr5 76177970 76178108 -76359151 + (CA)n Simple_repeat Simple_repeat 2 140 0 3 1166 38 22 0 0 chr5 76178142 76178187 -76359072 + AT_rich Low_complexity Low_complexity 1 45 0 3 1166 897 218 59 10 chr5 76178383 76178587 -76358672 + B3 SINE B2 3 216 0 3 1166 333 0 0 0 chr5 76179913 76179950 -76357309 + (TAG)n Simple_repeat Simple_repeat 1 37 0 3 1166 553 276 27 14 chr5 76179950 76180097 -76357162 - RSINE1 SINE B4 -5 160 12 3 1166 248 343 44 4 chr5 76180577 76180726 -76356533 + MIR SINE MIR 36 191 -77 3 1166 861 324 68 16 chr5 76181603 76182045 -76355214 - MLT1C LTR MaLR 0 467 3 3 1166 2226 137 72 0 chr5 76182110 76182497 -76354762 + MTC LTR MaLR 7 421 0 3 1166 363 294 14 114 chr5 76182813 76183032 -76354227 + L1MC3 LINE L1 7382 7578 -207 3 1166 1713 162 23 3 chr5 76183492 76183801 -76353458 - Lx LINE L1 0 6654 6340 3 1166 243 353 106 7 chr5 76183861 76184012 -76353247 + MLT1F2 LTR MaLR 134 299 -261 3 1166 271 339 9 18 chr5 76184111 76184222 -76353037 + MLT1F2 LTR MaLR 451 560 0 3 1166 517 219 23 47 chr5 76184472 76184601 -76352658 + LTR85c LTR Gypsy? 2 127 -696 3 1166 259 323 29 103 chr5 76184577 76184822 -76352437 + LTR85c LTR Gypsy? 521 761 -62 3 1166 54 94 0 0 chr5 76184983 76185142 -76352117 + AT_rich Low_complexity Low_complexity 1 159 0 3 1166 445 276 8 33 chr5 76185209 76185329 -76351930 - RSINE1 SINE B4 -46 119 3 3 1166 546 303 26 0 chr5 76185448 76185600 -76351659 - B3A SINE B2 -41 157 2 3 1166 266 308 28 0 chr5 76186367 76186474 -76350785 + MIR SINE MIR 112 221 -41 3 1166 208 147 0 0 chr5 76187332 76187366 -76349893 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3 1166 621 27 0 0 chr5 76187501 76187576 -76349683 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 3 1166 300 366 16 16 chr5 76188629 76188754 -76348505 + RSINE1 SINE B4 37 161 -4 3 1166 348 286 0 0 chr5 76188918 76189009 -76348250 - Tigger5 DNA MER2_type -25 2381 2291 3 1166 446 297 121 28 chr5 76189007 76189222 -76348037 - Tigger5 DNA MER2_type -2166 240 6 3 1166 254 211 35 0 chr5 76189455 76189512 -76347747 + RSINE1 SINE B4 59 117 -48 3 1166 333 0 0 0 chr5 76189514 76189551 -76347708 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1166 254 73 24 0 chr5 76189551 76189591 -76347668 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1166 31 0 0 0 chr5 76189698 76189729 -76347530 + AT_rich Low_complexity Low_complexity 1 31 0 3 1166 1462 203 12 138 chr5 76189864 76190046 -76347213 + ORR1D1 LTR MaLR 1 128 -246 3 1166 1232 41 0 0 chr5 76190046 76190193 -76347066 - B1_Mm SINE Alu 0 147 1 3 1166 1462 203 12 138 chr5 76190193 76190438 -76346821 + ORR1D1 LTR MaLR 129 374 0 3 1166 1622 136 22 0 chr5 76190676 76190948 -76346311 - RLTR27 LTR ERVK 0 309 32 3 1166 2088 47 0 0 chr5 76190949 76191225 -76346034 - RLTR10A LTR ERVK -135 276 1 3 1166 300 143 0 0 chr5 76191330 76191386 -76345873 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 3 1166 382 303 26 65 chr5 76192203 76192486 -76344773 - ORR1E LTR MaLR 0 379 95 3 1166 225 179 0 0 chr5 76192566 76192605 -76344654 - MLT2B5 LTR ERVL -493 108 70 3 1166 368 253 0 44 chr5 76192572 76192663 -76344596 - ORR1E LTR MaLR -287 92 6 3 1166 435 347 46 52 chr5 76194492 76194799 -76342460 + MLT1B LTR MaLR 50 354 -36 3 1166 609 246 15 0 chr5 76195008 76195142 -76342117 + B1_Mur2 SINE Alu 14 149 0 3 1166 470 91 0 13 chr5 76195145 76195223 -76342036 + (GA)n Simple_repeat Simple_repeat 2 78 0 3 1166 197 255 21 0 chr5 76195670 76195717 -76341542 + L3 LINE CR1 4427 4474 -15 3 1166 775 245 109 44 chr5 76197440 76197918 -76339341 + MT2A LTR ERVL 1 493 -40 3 1166 374 111 0 14 chr5 76197929 76197969 -76339290 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1166 393 22 0 0 chr5 76197969 76198015 -76339244 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1166 374 111 0 14 chr5 76198015 76198047 -76339212 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1166 880 278 177 16 chr5 76198279 76198926 -76338333 + L1M4 LINE L1 4165 4971 -1175 3 1166 810 64 0 0 chr5 76198927 76199036 -76338223 + (GAA)n Simple_repeat Simple_repeat 3 111 0 3 1166 238 284 39 39 chr5 76199141 76199218 -76338041 - MER21B LTR ERV1 -91 772 696 3 1166 498 108 0 0 chr5 76199295 76199369 -76337890 + (TTTG)n Simple_repeat Simple_repeat 1 74 0 3 1166 523 316 232 10 chr5 76199388 76199694 -76337565 - MER21B LTR ERV1 -295 568 195 3 1166 314 271 83 0 chr5 76199737 76199833 -76337426 - MER21B LTR ERV1 -754 109 6 3 1166 984 230 70 107 chr5 76199836 76200220 -76337039 + L1M4 LINE L1 4963 5332 -814 3 1166 3206 174 33 71 chr5 76200398 76200983 -76336276 + RMER1A Other Other 347 901 -129 3 1166 375 23 0 0 chr5 76200983 76201027 -76336232 + (TGG)n Simple_repeat Simple_repeat 1 44 0 3 1166 3206 174 33 71 chr5 76201027 76201142 -76336117 + RMER1A Other Other 902 1020 -10 3 1166 1738 189 20 6 chr5 76201144 76201490 -76335769 + ORR1B2 LTR MaLR 17 367 0 3 1166 225 0 0 0 chr5 76201898 76201923 -76335336 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1166 575 252 27 58 chr5 76202034 76202216 -76335043 - B4 SINE B4 -99 193 10 3 1166 265 284 55 9 chr5 76202221 76202331 -76334928 + L1MB8 LINE L1 6039 6153 -25 3 1166 1225 169 31 27 chr5 76202972 76203197 -76334062 - URR1A DNA MER1_type 0 226 1 3 1166 461 351 89 25 chr5 76203470 76203707 -76333552 + MLT1H1 LTR MaLR 12 263 -292 3 1166 490 260 37 85 chr5 76204124 76204288 -76332971 + MTEb LTR MaLR 1 156 -223 3 1166 387 269 78 0 chr5 76204431 76204572 -76332687 - RMER20B LTR ERVK -296 331 180 3 1166 743 220 55 5 chr5 76204737 76204938 -76332321 + MTEb LTR MaLR 167 377 -2 3 1166 330 313 36 6 chr5 76205163 76205330 -76331929 - MER5A DNA MER1_type -8 181 10 3 1166 180 214 0 0 chr5 76205873 76205915 -76331344 + MIR SINE MIR 174 215 -47 3 1166 196 264 137 54 chr5 76206913 76207081 -76330178 - MIRc SINE MIR -18 250 69 3 1166 360 263 85 30 chr5 76207110 76207129 -76330130 - CYRA11_Mm Unknown Y-chromosome -241 376 230 3 1166 943 126 69 0 chr5 76207129 76207304 -76329955 + URR1A DNA MER1_type 40 226 0 3 1166 239 119 44 15 chr5 76207687 76207755 -76329504 + (CCA)n Simple_repeat Simple_repeat 3 72 0 3 1166 385 302 5 43 chr5 76207831 76208018 -76329241 + (CCA)n Simple_repeat Simple_repeat 1 180 0 3 1166 346 250 19 45 chr5 76207994 76208149 -76329110 + (CACCAT)n Simple_repeat Simple_repeat 4 154 0 3 1166 491 82 14 0 chr5 76208301 76208374 -76328885 + (TGG)n Simple_repeat Simple_repeat 2 75 0 3 1166 438 20 0 0 chr5 76208748 76208799 -76328460 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1166 456 276 52 0 chr5 76209801 76209935 -76327324 - B1F1 SINE Alu -8 141 1 3 1166 409 274 105 65 chr5 76210014 76210144 -76327115 - Lx8 LINE L1 -4 7469 7333 3 1166 450 0 0 0 chr5 76210144 76210194 -76327065 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1166 409 274 105 65 chr5 76210194 76210340 -76326919 - Lx8 LINE L1 -141 7332 7182 3 1166 259 313 48 87 chr5 76211656 76211887 -76325372 + ID_B1 SINE B4 3 224 0 3 1166 315 0 0 0 chr5 76211887 76211922 -76325337 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1166 183 80 0 0 chr5 76211925 76211950 -76325309 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1166 313 315 50 14 chr5 76212409 76212556 -76324703 - MER20B DNA MER1_type -4 215 56 3 1166 494 325 41 44 chr5 76213843 76214136 -76323123 - B4A SINE B4 0 292 1 3 1166 21 0 0 0 chr5 76214353 76214374 -76322885 + AT_rich Low_complexity Low_complexity 1 21 0 3 1166 207 0 0 0 chr5 76214416 76214439 -76322820 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1166 1003 249 150 21 chr5 76214641 76214913 -76322346 + L1MA4 LINE L1 5497 5788 -512 3 1166 282 29 0 0 chr5 76214913 76214948 -76322311 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1166 1003 257 152 26 chr5 76214948 76215142 -76322117 + L1MA4 LINE L1 5789 6012 -288 3 1166 217 208 42 0 chr5 76215244 76215292 -76321967 + GA-rich Low_complexity Low_complexity 4 53 0 3 1166 252 0 0 0 chr5 76215653 76215681 -76321578 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1166 610 136 17 0 chr5 76215681 76215799 -76321460 + GA-rich Low_complexity Low_complexity 2 121 0 3 1166 996 74 17 28 chr5 76215799 76215979 -76321280 + (GGGAGA)n Simple_repeat Simple_repeat 1 178 0 3 1166 495 342 53 69 chr5 76216094 76216383 -76320876 - MLT1C LTR MaLR -4 463 184 4 1166 433 211 165 88 chr5 76216383 76216565 -76320694 - B3A SINE B2 0 198 3 4 1166 495 342 53 69 chr5 76216565 76216693 -76320566 - MLT1C LTR MaLR -284 183 53 4 1166 599 330 60 68 chr5 76216718 76217099 -76320160 - MLT1C-int LTR MaLR 0 1371 994 4 1166 836 286 38 58 chr5 76217097 76217305 -76319954 - MLT1C-int LTR MaLR -939 432 233 4 1166 1072 71 13 0 chr5 76217305 76217460 -76319799 + (TCTA)n Simple_repeat Simple_repeat 4 160 0 4 1166 836 286 38 58 chr5 76217460 76217596 -76319663 - MLT1C-int LTR MaLR -1139 232 95 4 1166 22 56 0 0 chr5 76217853 76217889 -76319370 + AT_rich Low_complexity Low_complexity 1 36 0 4 1166 1379 50 61 0 chr5 76217912 76218092 -76319167 - L1_Mus1 LINE L1 0 6567 6377 4 1166 318 310 10 0 chr5 76218092 76218192 -76319067 - MLT1C-int LTR MaLR -1270 101 1 4 1166 649 286 33 0 chr5 76218291 76218473 -76318786 - MLT2C1 LTR ERVL -192 205 18 4 1166 206 119 0 45 chr5 76218667 76218711 -76318548 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 4 1166 267 271 9 24 chr5 76218797 76218879 -76318380 + MIRb SINE MIR 140 225 -43 4 1166 406 242 6 24 chr5 76219045 76219223 -76318036 + ID_B1 SINE B4 6 223 -1 4 1166 304 320 19 45 chr5 76219917 76220071 -76317188 - MER5A1 DNA MER1_type -16 150 1 4 1166 465 188 0 0 chr5 76220309 76220394 -76316865 + PB1D10 SINE Alu 32 116 -1 4 1166 281 74 0 69 chr5 76220396 76220454 -76316805 + (TTTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1166 418 359 36 29 chr5 76220455 76220697 -76316562 + MIR SINE MIR 23 261 -1 4 1166 228 345 60 33 chr5 76220704 76220854 -76316405 + MIRb SINE MIR 20 173 -95 4 1166 351 308 46 90 chr5 76223322 76223690 -76313569 + L1ME4a LINE L1 5520 5871 -253 4 1166 1086 307 237 25 chr5 76223931 76225106 -76312153 + L2a LINE L2 831 2253 -1166 4 1166 1081 213 9 5 chr5 76225175 76225387 -76311872 - B3 SINE B2 -1 215 3 4 1166 540 0 0 0 chr5 76225494 76225554 -76311705 + (GTTTG)n Simple_repeat Simple_repeat 2 61 0 4 1166 673 181 60 0 chr5 76225554 76225670 -76311589 - B1_Mur1 SINE Alu -11 138 16 4 1166 412 342 214 12 chr5 76225782 76226030 -76311229 + MLT1G1 LTR MaLR 214 511 -68 4 1166 235 315 22 11 chr5 76226091 76226181 -76311078 + L2a LINE L2 2963 3053 -366 4 1166 211 224 9 36 chr5 76226219 76226330 -76310929 + CT-rich Low_complexity Low_complexity 6 113 0 4 1166 265 282 123 37 chr5 76226331 76226493 -76310766 + L2a LINE L2 3101 3276 -150 4 1166 872 170 6 3 chr5 76226831 76227488 -76309771 + (TG)n Simple_repeat Simple_repeat 1 659 0 4 1166 762 266 59 22 chr5 76227512 76227785 -76309474 - B4A SINE B4 -6 286 4 4 1166 237 333 54 82 chr5 76227858 76228005 -76309254 - MLT1G1 LTR MaLR -14 565 423 4 1166 225 300 29 0 chr5 76228043 76228113 -76309146 - LTR81A LTR ERV1? -1098 252 181 4 1166 1318 265 51 19 chr5 76228379 76228810 -76308449 - Lx8 LINE L1 -142 7331 6887 4 1166 26 0 0 0 chr5 76229056 76229082 -76308177 + AT_rich Low_complexity Low_complexity 1 26 0 4 1166 24 53 0 0 chr5 76229188 76229226 -76308033 + AT_rich Low_complexity Low_complexity 1 38 0 4 1166 1255 207 0 0 chr5 76229277 76229490 -76307769 - B3 SINE B2 -3 213 1 4 1166 417 215 0 12 chr5 76229532 76229612 -76307647 + RSINE1 SINE B4 3 81 -84 4 1166 191 61 0 29 chr5 76229623 76229657 -76307602 + (TAAAA)n Simple_repeat Simple_repeat 4 36 0 4 1166 22 35 0 0 chr5 76229696 76229725 -76307534 + AT_rich Low_complexity Low_complexity 1 29 0 4 1166 443 135 30 40 chr5 76229762 76229862 -76307397 - Lx9 LINE L1 -15 7629 7531 4 1166 471 35 0 0 chr5 76229872 76229929 -76307330 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 4 1166 257 337 0 21 chr5 76230433 76230527 -76306732 - L2b LINE L2 -236 3139 3048 4 1166 354 347 21 0 chr5 76230571 76230715 -76306544 + MIR SINE MIR 95 241 -21 4 1166 1260 114 17 0 chr5 76232450 76232625 -76304634 + B2_Mm2 SINE B2 4 181 -14 4 1166 795 266 57 18 chr5 76233328 76233607 -76303652 + B4A SINE B4 1 290 -2 4 1166 243 280 6 25 chr5 76233614 76233777 -76303482 + (CATATA)n Simple_repeat Simple_repeat 1 159 0 4 1166 249 330 8 33 chr5 76233801 76233923 -76303336 + (CATATA)n Simple_repeat Simple_repeat 6 124 0 4 1166 3449 64 28 0 chr5 76234135 76234557 -76302702 - RLTR10C LTR ERVK 0 436 3 4 1166 481 293 65 0 chr5 76234597 76234720 -76302539 + ID_B1 SINE B4 80 210 -14 4 1166 253 82 41 0 chr5 76235020 76235069 -76302190 + (TTTTG)n Simple_repeat Simple_repeat 1 51 0 4 1166 552 255 7 42 chr5 76235069 76235229 -76302030 - B1F SINE Alu 0 149 1 4 1166 183 300 86 12 chr5 76236240 76236321 -76300938 + L2b LINE L2 3271 3357 -18 4 1166 366 204 0 0 chr5 76236470 76236558 -76300701 + (CA)n Simple_repeat Simple_repeat 2 89 0 4 1166 1194 322 34 22 chr5 76237759 76237814 -76299445 - MLT2B4 LTR ERVL -6 550 496 4 1166 423 0 0 0 chr5 76237814 76237861 -76299398 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1166 1194 322 34 22 chr5 76237861 76238342 -76298917 - MLT2B4 LTR ERVL -61 495 8 4 1166 631 264 110 21 chr5 76238345 76238581 -76298678 + MLT1B LTR MaLR 134 390 0 4 1166 547 265 38 98 chr5 76239518 76239558 -76297701 + CYRA11_Mm Unknown Y-chromosome 128 151 -466 4 1166 1320 140 9 53 chr5 76239558 76239785 -76297474 - URR1B DNA MER1_type 0 225 9 4 1166 261 325 73 67 chr5 76239821 76239986 -76297273 - MLT1D LTR MaLR -308 197 32 4 1166 955 307 70 6 chr5 76240265 76240580 -76296679 - MLT1A0 LTR MaLR -14 351 17 4 1166 354 334 36 30 chr5 76240608 76240813 -76296446 + MIRb SINE MIR 48 261 -1 4 1166 232 269 15 0 chr5 76241593 76241660 -76295599 - ID4 SINE ID -14 69 2 4 1166 199 344 44 56 chr5 76241797 76241957 -76295302 + L2a LINE L2 3269 3426 0 4 1166 400 332 77 24 chr5 76243223 76243430 -76293829 - MER58A DNA MER1_type -1 223 6 4 1166 257 321 226 0 chr5 76244394 76244562 -76292697 - MLT1I LTR MaLR -205 206 1 4 1166 634 253 19 49 chr5 76244806 76244968 -76292291 - RLTR20D LTR ERVK -5 563 407 4 1166 551 233 115 77 chr5 76244943 76245203 -76292056 - RLTR16 LTR ERVK -235 270 1 4 1166 311 284 12 0 chr5 76245203 76245281 -76291978 + MTEb LTR MaLR 299 377 -2 4 1166 207 0 0 0 chr5 76245618 76245641 -76291618 + (GA)n Simple_repeat Simple_repeat 1 23 0 4 1166 464 219 21 10 chr5 76246154 76246251 -76291008 - B1F SINE Alu -15 134 37 4 1166 492 323 95 68 chr5 76246889 76247214 -76290045 + MLT1A LTR MaLR 11 344 -30 4 1166 251 175 18 0 chr5 76247271 76247328 -76289931 + (CATATA)n Simple_repeat Simple_repeat 6 63 0 4 1166 612 281 14 7 chr5 76247328 76247468 -76289791 + RSINE1 SINE B4 4 144 -21 4 1166 314 34 0 78 chr5 76247477 76247541 -76289718 + (GAAAA)n Simple_repeat Simple_repeat 2 60 0 4 1166 373 298 25 0 chr5 76247760 76247881 -76289378 + ERVL-E-int LTR ERVL 4607 4730 -937 4 1166 2139 120 6 6 chr5 76248376 76248695 -76288564 - ORR1A2 LTR MaLR -8 319 1 4 1166 322 234 87 58 chr5 76249688 76249837 -76287422 + MIRb SINE MIR 3 149 -127 4 1166 252 235 0 0 chr5 76250179 76250230 -76287029 - MADE2 DNA Mariner -3 77 27 4 1166 334 299 85 80 chr5 76250665 76250692 -76286567 - LTR33A LTR ERVL -314 206 180 4 1166 594 75 0 0 chr5 76250692 76250772 -76286487 + (TC)n Simple_repeat Simple_repeat 1 80 0 4 1166 334 299 85 80 chr5 76250772 76250944 -76286315 - LTR33A LTR ERVL -341 179 7 4 1166 1274 73 0 11 chr5 76251864 76252044 -76285215 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 4 1166 487 263 9 9 chr5 76252095 76252210 -76285049 + MLT1A0 LTR MaLR 6 120 -245 4 1166 719 264 57 84 chr5 76252230 76252528 -76284731 + B4A SINE B4 3 292 0 4 1166 241 262 69 112 chr5 76252623 76252739 -76284520 + MLT1A0 LTR MaLR 330 440 -27 4 1166 513 84 0 0 chr5 76252844 76252915 -76284344 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1166 210 301 22 116 chr5 76253415 76253551 -76283708 - L2c LINE L2 -13 3362 3225 4 1166 234 302 0 0 chr5 76253565 76253618 -76283641 + RSINE1 SINE B4 3 55 -110 4 1166 410 111 42 0 chr5 76253701 76253773 -76283486 + CT-rich Low_complexity Low_complexity 3 77 0 4 1166 27 0 0 0 chr5 76253779 76253806 -76283453 + AT_rich Low_complexity Low_complexity 1 27 0 4 1166 1202 139 114 0 chr5 76254781 76254983 -76282276 - URR1A DNA MER1_type -1 225 1 4 1166 279 194 81 168 chr5 76255635 76255784 -76281475 + MTE2a LTR MaLR 195 330 -49 4 1166 238 264 54 54 chr5 76255939 76256031 -76281228 - MLT1J LTR MaLR -180 332 241 4 1166 254 293 30 117 chr5 76256109 76256186 -76281073 - MLT1J LTR MaLR -303 209 136 4 1166 2977 72 23 18 chr5 76256186 76256584 -76280675 - MTB LTR MaLR 0 400 1 4 1166 254 293 30 117 chr5 76256584 76256703 -76280556 - MLT1J LTR MaLR -377 135 31 4 1166 489 200 20 10 chr5 76256883 76256984 -76280275 + B4A SINE B4 1 102 -190 4 1166 554 172 238 39 chr5 76256982 76257152 -76280107 + B3 SINE B2 35 216 0 4 1166 372 22 0 0 chr5 76257224 76257269 -76279990 + (GA)n Simple_repeat Simple_repeat 1 45 0 4 1166 483 255 0 18 chr5 76257382 76257494 -76279765 + B3 SINE B2 53 162 -54 4 1166 333 0 0 0 chr5 76257496 76257533 -76279726 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1166 241 310 53 53 chr5 76257545 76257620 -76279639 + B4A SINE B4 218 292 0 4 1166 229 356 7 39 chr5 76257620 76257775 -76279484 + (CA)n Simple_repeat Simple_repeat 1 150 0 4 1166 438 53 0 0 chr5 76257846 76257903 -76279356 + (GGA)n Simple_repeat Simple_repeat 3 59 0 4 1166 187 188 0 111 chr5 76258163 76258217 -76279042 - L3 LINE CR1 -3539 950 903 4 1166 273 164 9 28 chr5 76259654 76259722 -76277537 + B2_Mm2 SINE B2 1 67 -131 4 1166 16032 147 19 139 chr5 76259722 76263946 -76273313 - L1_Mur2 LINE L1 -1279 4598 882 4 1166 530 262 7 7 chr5 76264319 76264461 -76272798 - L1M2 LINE L1 -853 5290 5149 4 1166 890 277 48 43 chr5 76264465 76264971 -76272288 + L1_Rod LINE L1 1510 2024 -3856 4 1166 1731 206 59 36 chr5 76266005 76266397 -76270862 + MTD LTR MaLR 18 418 -1 4 1166 464 235 10 19 chr5 76266397 76266495 -76270764 - PB1D7 SINE Alu -17 103 7 4 1166 206 307 146 11 chr5 76266772 76266861 -76270398 + MIR SINE MIR 102 202 -60 4 1166 240 111 0 0 chr5 76267882 76267918 -76269341 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1166 364 174 25 25 chr5 76267924 76268083 -76269176 + (TA)n Simple_repeat Simple_repeat 2 160 0 5 1166 401 260 165 60 chr5 76268145 76268509 -76268750 + MLT1A1 LTR MaLR 4 405 -3 5 1166 262 399 51 51 chr5 76268699 76268955 -76268304 - MLT1N2 LTR MaLR -303 259 4 5 1166 1202 238 35 35 chr5 76269128 76269415 -76267844 + B4A SINE B4 6 292 0 5 1166 242 345 38 49 chr5 76269737 76269920 -76267339 + L2b LINE L2 3186 3366 -9 5 1166 1147 163 4 79 chr5 76271187 76271427 -76265832 - URR1B DNA MER1_type -3 222 1 5 1166 32 0 0 0 chr5 76271507 76271539 -76265720 + AT_rich Low_complexity Low_complexity 1 32 0 5 1166 1295 232 40 156 chr5 76271821 76272271 -76264988 + MTC LTR MaLR 24 421 0 5 1166 259 78 39 0 chr5 76272395 76272446 -76264813 + (CCCCCA)n Simple_repeat Simple_repeat 5 57 0 5 1166 322 315 104 52 chr5 76273937 76274205 -76263054 - L2a LINE L2 -118 3308 3027 5 1166 676 285 175 58 chr5 76275057 76275366 -76261893 - ORR1E LTR MaLR -2 357 13 5 1166 186 172 0 0 chr5 76275417 76275446 -76261813 + MIRb SINE MIR 224 252 -16 5 1166 202 241 35 0 chr5 76277089 76277147 -76260112 + L2 LINE L2 1999 2058 -1361 5 1166 240 305 93 19 chr5 76277211 76277318 -76259941 - L2a LINE L2 -1245 2174 2060 5 1166 513 289 25 60 chr5 76277511 76277710 -76259549 + MIR SINE MIR 52 243 -19 5 1166 512 245 108 35 chr5 76278032 76278235 -76259024 - MER2 DNA MER2_type -1 344 127 5 1166 285 345 8 8 chr5 76279452 76279569 -76257690 + MLT1A1 LTR MaLR 29 145 -263 5 1166 611 213 22 0 chr5 76279605 76279741 -76257518 - Lx6 LINE L1 -11 7449 7311 5 1166 1885 122 49 43 chr5 76279741 76280066 -76257193 + RMER1C Other Other 899 1225 -117 5 1166 210 71 0 0 chr5 76280067 76280095 -76257164 + (TCC)n Simple_repeat Simple_repeat 1 28 0 5 1166 781 153 7 49 chr5 76280095 76280239 -76257020 + RMER1C Other Other 1204 1341 -1 5 1166 5350 226 77 37 chr5 76280238 76281504 -76255755 - Lx6 LINE L1 -136 7324 6009 5 1166 232 323 11 21 chr5 76281776 76281871 -76255388 + CT-rich Low_complexity Low_complexity 2 95 0 5 1166 360 97 0 0 chr5 76282276 76282338 -76254921 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1166 2890 161 39 51 chr5 76282355 76282923 -76254336 + RLTR31_Mm LTR ERVK 1 561 0 5 1166 214 140 20 20 chr5 76283587 76283638 -76253621 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1167 409 223 12 0 chr5 76284777 76284943 -76252316 + (TG)n Simple_repeat Simple_repeat 2 169 0 5 1167 287 284 45 0 chr5 76284954 76285042 -76252217 - B4 SINE B4 -3 289 198 5 1167 509 294 99 5 chr5 76285061 76285273 -76251986 - B4A SINE B4 -60 232 1 5 1167 342 0 0 0 chr5 76285568 76285606 -76251653 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 5 1167 671 266 70 116 chr5 76285647 76285949 -76251310 + B4A SINE B4 2 289 -3 5 1167 240 272 42 32 chr5 76286213 76286308 -76250951 - MLT1J2 LTR MaLR -305 143 48 5 1167 272 287 33 44 chr5 76286312 76286403 -76250856 - MIR SINE MIR -168 94 5 5 1167 629 232 14 0 chr5 76286424 76286566 -76250693 - B1_Mur2 SINE Alu 0 149 6 5 1167 2105 145 55 20 chr5 76287552 76287953 -76249306 - MTC LTR MaLR -6 415 1 5 1167 258 106 0 0 chr5 76288464 76288511 -76248748 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1167 249 277 126 33 chr5 76289668 76289851 -76247408 + L1M5 LINE L1 2128 2327 -3819 5 1167 260 286 25 59 chr5 76289933 76290052 -76247207 - B4A SINE B4 -1 291 177 5 1167 859 283 102 65 chr5 76290052 76290780 -76246479 + L1MA6 LINE L1 5350 6123 -177 5 1167 1454 182 19 16 chr5 76290875 76291182 -76246077 - RLTR11B LTR ERVK 0 453 146 5 1167 492 253 64 6 chr5 76291247 76291418 -76245841 + L1MA6 LINE L1 6112 6292 -8 5 1167 332 306 65 46 chr5 76291751 76291927 -76245332 - L1M5 LINE L1 -662 5578 5396 5 1167 264 30 0 0 chr5 76291927 76291960 -76245299 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1167 1125 70 0 7 chr5 76291960 76292105 -76245154 - B1_Mus1 SINE Alu -3 145 2 5 1167 332 306 65 46 chr5 76292105 76292143 -76245116 - L1M5 LINE L1 -845 5395 5360 5 1167 432 0 0 0 chr5 76293045 76293093 -76244166 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1167 261 0 0 0 chr5 76293175 76293204 -76244055 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1167 708 31 30 38 chr5 76293743 76293876 -76243383 + (TTCTC)n Simple_repeat Simple_repeat 3 134 0 5 1167 393 153 0 0 chr5 76294340 76294412 -76242847 + (TG)n Simple_repeat Simple_repeat 1 72 0 5 1167 249 309 0 0 chr5 76294416 76294484 -76242775 - ID4_ SINE ID -13 70 3 5 1167 1221 258 54 21 chr5 76294641 76294977 -76242282 - MTEa LTR MaLR -8 371 25 5 1167 1154 102 78 0 chr5 76295202 76295368 -76241891 + B2_Mm1t SINE B2 1 179 -14 5 1167 227 175 0 0 chr5 76296137 76296177 -76241082 - MER5B DNA MER1_type -124 54 15 5 1167 1701 182 125 22 chr5 76297992 76298407 -76238852 + RLTR16 LTR ERVK 1 458 -47 5 1167 3988 138 38 22 chr5 76298459 76299140 -76238119 - RLTR17 LTR ERVK 0 692 1 5 1167 200 86 29 0 chr5 76299212 76299247 -76238012 + (TTCTCC)n Simple_repeat Simple_repeat 3 38 0 5 1167 223 262 94 47 chr5 76299287 76299351 -76237908 - ID4_ SINE ID -15 68 2 5 1167 298 263 226 26 chr5 76300730 76300964 -76236295 - LTR16A1 LTR ERVL -3 453 173 5 1167 214 254 88 38 chr5 76301717 76301861 -76235398 + MIRb SINE MIR 16 156 -106 5 1167 192 152 0 0 chr5 76302076 76302109 -76235150 + T-rich Low_complexity Low_complexity 2 34 0 5 1167 236 351 26 0 chr5 76302644 76302758 -76234501 + MER63A DNA AcHobo 3 119 -91 5 1167 518 159 23 0 chr5 76303728 76303816 -76233443 + B3 SINE B2 4 93 -123 5 1167 237 309 53 0 chr5 76303735 76303829 -76233430 + RSINE1 SINE B4 12 110 -55 5 1167 666 248 21 0 chr5 76304221 76304362 -76232897 + RSINE1 SINE B4 2 145 -20 5 1167 405 0 0 0 chr5 76304362 76304407 -76232852 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1167 475 261 49 0 chr5 76304443 76304585 -76232674 - HAL1-2a_MD LINE L1 -548 2476 2328 5 1167 1884 99 126 96 chr5 76305736 76306092 -76231167 + ORR1B2 LTR MaLR 1 367 0 5 1167 1085 243 35 28 chr5 76306300 76306588 -76230671 + B4A SINE B4 3 292 0 5 1167 210 207 0 0 chr5 76307447 76307505 -76229754 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1167 679 244 0 93 chr5 76307526 76307698 -76229561 - B3A SINE B2 -41 157 2 5 1167 350 21 21 0 chr5 76307720 76307767 -76229492 + (TTA)n Simple_repeat Simple_repeat 1 48 0 5 1167 291 140 0 0 chr5 76307771 76307821 -76229438 + (ATG)n Simple_repeat Simple_repeat 3 52 0 5 1167 328 305 31 4 chr5 76307821 76307940 -76229319 - B1_Mur2 SINE Alu -19 130 10 5 1167 335 257 94 60 chr5 76308690 76308914 -76228345 + L1M2 LINE L1 2152 2455 -4124 5 1167 1105 89 0 0 chr5 76309357 76309514 -76227745 + B2_Mm2 SINE B2 2 158 -37 5 1167 378 0 0 0 chr5 76309515 76309557 -76227702 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 5 1167 3175 300 74 49 chr5 76309593 76309828 -76227431 + L1M2 LINE L1 2906 3143 -3702 5 1167 252 0 0 0 chr5 76309828 76309856 -76227403 + (CATATA)n Simple_repeat Simple_repeat 5 32 0 5 1167 3175 300 74 49 chr5 76309856 76309890 -76227369 + L1M2 LINE L1 3144 3150 -3695 5 1167 264 59 0 0 chr5 76309890 76309924 -76227335 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 1167 3175 300 74 49 chr5 76309924 76311363 -76225896 + L1M2 LINE L1 3151 4661 -2184 5 1167 207 0 0 0 chr5 76311363 76311386 -76225873 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1167 3175 300 74 49 chr5 76311386 76311431 -76225828 + L1M2 LINE L1 4662 4704 -2141 5 1167 2128 132 3 3 chr5 76311431 76311757 -76225502 + ORR1A3 LTR MaLR 1 326 0 5 1167 3175 300 74 49 chr5 76311757 76312142 -76225117 + L1M2 LINE L1 4705 5100 -1745 5 1167 356 296 201 27 chr5 76312363 76312766 -76224493 + L1MC1 LINE L1 5855 6327 -6 5 1167 348 24 0 0 chr5 76313136 76313177 -76224082 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1167 205 200 0 0 chr5 76315138 76315178 -76222081 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 5 1167 834 318 39 13 chr5 76315272 76315581 -76221678 - L1_Mur3 LINE L1 -207 5673 5357 5 1167 231 167 20 20 chr5 76315622 76315671 -76221588 - L1M LINE L1 -923 5374 5326 5 1167 773 236 19 0 chr5 76317075 76317236 -76220023 + B3 SINE B2 2 165 -51 5 1167 873 29 0 0 chr5 76317236 76317340 -76219919 + (CA)n Simple_repeat Simple_repeat 2 105 0 5 1167 195 279 16 0 chr5 76317358 76317419 -76219840 + MIRc SINE MIR 92 153 -115 5 1167 623 267 69 44 chr5 76319192 76319396 -76217863 - MIRb SINE MIR -20 248 40 5 1167 861 188 78 56 chr5 76319919 76320075 -76217184 + Lx9 LINE L1 7315 7476 -168 5 1167 360 0 0 0 chr5 76320075 76320115 -76217144 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1167 861 188 78 56 chr5 76320115 76320279 -76216980 + Lx9 LINE L1 7477 7641 -3 5 1167 438 20 0 0 chr5 76320775 76320826 -76216433 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 5 1167 609 185 0 0 chr5 76320826 76320945 -76216314 + GA-rich Low_complexity Low_complexity 1 119 0 5 1167 1052 220 24 9 chr5 76321075 76321286 -76215973 + B3 SINE B2 1 214 -2 5 1167 265 296 51 17 chr5 76321461 76321578 -76215681 - L1MA4A LINE L1 -365 5938 5818 5 1167 580 283 52 7 chr5 76322327 76322480 -76214779 - RSINE1 SINE B4 0 165 6 5 1167 571 253 176 17 chr5 76323625 76323787 -76213472 + MTEa LTR MaLR 1 198 -181 5 1167 534 31 0 0 chr5 76323787 76323851 -76213408 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1167 571 253 176 17 chr5 76323851 76323921 -76213338 + MTEa LTR MaLR 199 269 -110 5 1167 282 123 0 0 chr5 76324377 76324434 -76212825 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1167 5534 81 26 1 chr5 76324619 76325358 -76211901 + L1_Mus3 LINE L1 5870 6626 -12 5 1167 288 331 88 72 chr5 76325420 76325726 -76211533 + MLT1A LTR MaLR 62 372 -2 5 1167 477 275 38 71 chr5 76326531 76326751 -76210508 - B3A SINE B2 0 216 4 5 1167 1086 118 0 0 chr5 76327731 76328030 -76209229 + (CA)n Simple_repeat Simple_repeat 1 299 0 5 1167 394 289 44 15 chr5 76328408 76328545 -76208714 + ID_B1 SINE B4 84 224 0 5 1167 211 271 17 0 chr5 76334798 76334857 -76202402 - MIRb SINE MIR -175 93 34 6 1167 540 0 0 0 chr5 76336479 76336539 -76200720 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1167 182 367 0 12 chr5 76336582 76336662 -76200597 - MIRb SINE MIR -172 96 18 6 1167 254 0 0 80 chr5 76336736 76336786 -76200473 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 6 1167 183 114 0 0 chr5 76336818 76336853 -76200406 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1167 198 103 0 0 chr5 76336898 76336927 -76200332 + (TC)n Simple_repeat Simple_repeat 2 30 0 6 1167 475 90 0 25 chr5 76338808 76338888 -76198371 + (TTTTG)n Simple_repeat Simple_repeat 3 80 0 6 1167 323 237 0 26 chr5 76339095 76339173 -76198086 + RSINE1 SINE B4 2 77 -88 6 1167 310 289 21 0 chr5 76342315 76342412 -76194847 + L2a LINE L2 3080 3178 -248 6 1167 188 273 69 101 chr5 76342447 76342606 -76194653 + L2a LINE L2 3193 3346 -80 6 1167 183 296 0 0 chr5 76342611 76342665 -76194594 + MIR SINE MIR 205 258 -4 6 1167 25 51 0 0 chr5 76345353 76345392 -76191867 + AT_rich Low_complexity Low_complexity 1 39 0 6 1167 555 258 8 0 chr5 76346642 76346766 -76190493 + RSINE1 SINE B4 2 126 -39 6 1167 513 0 0 0 chr5 76346766 76346823 -76190436 + (TA)n Simple_repeat Simple_repeat 1 57 0 6 1167 205 176 0 0 chr5 76346838 76346872 -76190387 + CT-rich Low_complexity Low_complexity 1 34 0 6 1167 486 33 0 0 chr5 76346879 76346939 -76190320 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1167 432 0 0 0 chr5 76347142 76347190 -76190069 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1167 21 0 0 0 chr5 76348173 76348194 -76189065 + AT_rich Low_complexity Low_complexity 1 21 0 6 1167 3361 62 9 2 chr5 76349218 76349651 -76187608 + L1Md_F2 LINE L1 6147 6582 0 6 1167 207 251 39 0 chr5 76349918 76349993 -76187266 - MIRc SINE MIR -117 151 71 6 1167 231 284 13 13 chr5 76350062 76350137 -76187122 + GA-rich Low_complexity Low_complexity 1 75 0 6 1167 597 151 0 0 chr5 76350137 76350256 -76187003 + (CAGA)n Simple_repeat Simple_repeat 2 120 0 6 1167 707 100 9 0 chr5 76350765 76350875 -76186384 + (TC)n Simple_repeat Simple_repeat 1 111 0 6 1167 388 136 23 0 chr5 76351387 76351475 -76185784 + (CA)n Simple_repeat Simple_repeat 1 90 0 6 1167 604 290 81 59 chr5 76352562 76352632 -76184627 - B4A SINE B4 -15 277 208 6 1167 414 0 0 0 chr5 76352632 76352678 -76184581 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 1167 604 290 81 59 chr5 76352678 76352878 -76184381 - B4A SINE B4 -85 207 3 6 1167 214 178 0 0 chr5 76355720 76355765 -76181494 + A-rich Low_complexity Low_complexity 1 45 0 6 1167 3090 68 2 5 chr5 76356087 76356488 -76180771 + MTB LTR MaLR 1 400 0 6 1167 360 0 0 0 chr5 76356901 76356941 -76180318 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1167 303 28 0 0 chr5 76357542 76357578 -76179681 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1167 263 323 64 13 chr5 76359849 76360006 -76177253 - MER103 DNA DNA 0 166 2 6 1167 492 293 203 29 chr5 76361282 76361673 -76175586 + L2 LINE L2 2205 2682 -737 6 1167 441 0 0 0 chr5 76361673 76361722 -76175537 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1167 492 293 203 29 chr5 76361722 76361812 -76175447 + L2 LINE L2 2683 2770 -649 6 1167 225 273 0 0 chr5 76361812 76361856 -76175403 + ID4 SINE ID 13 56 -27 6 1167 594 194 0 25 chr5 76363030 76363273 -76173986 + (TG)n Simple_repeat Simple_repeat 1 236 0 6 1167 1148 69 0 7 chr5 76363283 76363429 -76173830 - B1_Mm SINE Alu 0 147 3 6 1167 821 144 6 0 chr5 76363429 76363589 -76173670 + (TG)n Simple_repeat Simple_repeat 2 162 0 6 1167 287 91 36 0 chr5 76365091 76365146 -76172113 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 6 1167 321 47 0 0 chr5 76365238 76365281 -76171978 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1167 1073 65 14 0 chr5 76365281 76365419 -76171840 - B1_Mur4 SINE Alu -9 141 2 6 1167 910 198 70 0 chr5 76367112 76367299 -76169960 + B3 SINE B2 2 201 -15 6 1167 186 43 0 0 chr5 76367300 76367323 -76169936 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 6 1167 213 65 0 0 chr5 76368714 76368745 -76168514 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 6 1167 276 301 98 62 chr5 76369004 76369229 -76168030 - L2a LINE L2 -323 3103 2871 6 1167 438 287 9 0 chr5 76371400 76371508 -76165751 + PB1D10 SINE Alu 3 111 -6 6 1167 276 189 0 54 chr5 76371458 76371514 -76165745 + ID_B1 SINE B4 172 224 0 6 1167 615 27 0 0 chr5 76373308 76373381 -76163878 + (GGGAA)n Simple_repeat Simple_repeat 3 75 0 6 1167 651 287 64 20 chr5 76376550 76376799 -76160460 + B4 SINE B4 8 267 -25 6 1167 189 0 0 0 chr5 76376852 76376873 -76160386 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1167 563 287 53 32 chr5 76377588 76377775 -76159484 + B3A SINE B2 8 198 0 6 1167 986 202 34 5 chr5 76378100 76378304 -76158955 - B3 SINE B2 -6 210 1 6 1167 1044 225 135 6 chr5 76378676 76378994 -76158265 - ORR1D2 LTR MaLR -11 359 1 6 1167 957 162 0 0 chr5 76379289 76379462 -76157797 + CT-rich Low_complexity Low_complexity 3 175 0 6 1167 248 111 22 0 chr5 76379462 76379507 -76157752 + (TTCC)n Simple_repeat Simple_repeat 2 47 0 6 1167 1107 191 5 28 chr5 76379527 76379743 -76157516 - B3 SINE B2 0 216 6 6 1167 661 298 6 0 chr5 76379909 76380070 -76157189 + RSINE1 SINE B4 2 163 -2 6 1167 661 242 102 10 chr5 76380091 76380287 -76156972 + B3 SINE B2 3 216 0 6 1167 271 135 0 0 chr5 76380369 76380406 -76156853 - Lx5 LINE L1 -169 6881 6845 6 1167 311 261 0 59 chr5 76380403 76380521 -76156738 + Lx4B LINE L1 6944 7054 -4 6 1167 927 255 138 4 chr5 76381514 76381789 -76155470 + ORR1E LTR MaLR 1 312 -47 6 1167 256 291 11 23 chr5 76382870 76382958 -76154301 - RSINE1 SINE B4 -77 88 2 6 1167 899 163 7 0 chr5 76382966 76383113 -76154146 - B1_Mur2 SINE Alu -1 148 1 6 1167 21 100 0 0 chr5 76383207 76383277 -76153982 + AT_rich Low_complexity Low_complexity 1 70 0 6 1167 312 300 74 109 chr5 76384743 76384945 -76152314 - RMER30 DNA MER1_type -1 201 7 6 1167 363 136 0 0 chr5 76385069 76385128 -76152131 + (GGGGA)n Simple_repeat Simple_repeat 5 63 0 6 1167 1507 0 11 6 chr5 76385128 76385307 -76151952 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 6 1167 756 33 0 0 chr5 76385307 76385397 -76151862 + (GAAAA)n Simple_repeat Simple_repeat 2 92 0 6 1167 273 294 81 18 chr5 76385407 76385518 -76151741 - B1_Mus1 SINE Alu -29 119 2 6 1167 494 350 28 9 chr5 76385758 76385974 -76151285 - MLT1F-int LTR MaLR -595 894 675 6 1167 258 347 48 70 chr5 76385998 76386227 -76151032 - MLT1F-int LTR MaLR -1262 227 4 6 1167 790 298 116 11 chr5 76386235 76386615 -76150644 - MLT1F LTR MaLR -5 543 124 6 1167 236 321 18 18 chr5 76386664 76386829 -76150430 - L1M5 LINE L1 -2268 3878 3714 6 1167 1387 218 72 3 chr5 76386850 76387182 -76150077 - MTD LTR MaLR -64 355 1 6 1167 288 338 83 79 chr5 76387262 76387490 -76149769 - B4A SINE B4 -47 245 17 6 1167 229 247 55 0 chr5 76387557 76387630 -76149629 - L1_Mm LINE L1 -2235 3648 3572 6 1167 232 310 92 8 chr5 76387725 76387855 -76149404 + L1MC5 LINE L1 7784 7924 -37 6 1167 205 218 55 0 chr5 76388710 76388765 -76148494 - MER5A DNA MER1_type 0 189 132 6 1167 429 306 88 35 chr5 76388781 76389042 -76148217 + L1MC1 LINE L1 6036 6310 -23 6 1167 639 98 0 0 chr5 76389728 76389820 -76147439 + (TC)n Simple_repeat Simple_repeat 1 92 0 6 1167 378 0 0 0 chr5 76390994 76391036 -76146223 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1167 219 69 0 0 chr5 76391123 76391152 -76146107 + (CATTA)n Simple_repeat Simple_repeat 2 30 0 6 1167 876 168 21 0 chr5 76391685 76391828 -76145431 + B1_Mur1 SINE Alu 2 147 -2 6 1167 732 127 21 0 chr5 76393044 76393186 -76144073 + (TAGA)n Simple_repeat Simple_repeat 3 147 0 6 1167 218 387 45 18 chr5 76393232 76393453 -76143806 + MIR SINE MIR 26 252 -10 6 1167 2160 154 41 36 chr5 76393557 76393653 -76143606 + MTC LTR MaLR 1 95 -326 6 1167 1205 68 0 0 chr5 76393653 76393800 -76143459 + B1_Mm SINE Alu 1 147 0 6 1167 2160 154 41 36 chr5 76393800 76394114 -76143145 + MTC LTR MaLR 96 413 -8 6 1167 414 0 0 0 chr5 76394133 76394179 -76143080 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1167 343 309 32 32 chr5 76394987 76395144 -76142115 - MER5A1 DNA MER1_type -9 157 1 6 1167 3578 241 126 20 chr5 76395405 76396314 -76140945 - Lx9 LINE L1 -334 7310 6338 6 1167 369 0 0 0 chr5 76396314 76396355 -76140904 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1167 3578 256 58 20 chr5 76396355 76396988 -76140271 - Lx9 LINE L1 -1307 6337 5488 6 1167 379 300 59 20 chr5 76398978 76399131 -76138128 + MIR SINE MIR 43 201 -61 6 1167 513 76 0 0 chr5 76399178 76399257 -76138002 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1167 768 218 23 101 chr5 76399377 76399596 -76137663 - B3 SINE B2 -13 203 2 6 1167 432 0 0 0 chr5 76399604 76399652 -76137607 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1167 241 321 0 0 chr5 76399666 76399722 -76137537 + (CG)n Simple_repeat Simple_repeat 2 57 0 6 1167 375 326 47 0 chr5 76399731 76399860 -76137399 - RSINE1 SINE B4 -24 141 7 6 1167 192 77 0 0 chr5 76400658 76400684 -76136575 + (TTC)n Simple_repeat Simple_repeat 2 27 0 6 1167 558 305 37 19 chr5 76401236 76401450 -76135809 - L1MA5 LINE L1 -3 6297 6080 6 1167 411 195 13 0 chr5 76402371 76402448 -76134811 - 5S rRNA rRNA -27 94 17 6 1167 187 281 0 45 chr5 76402855 76402922 -76134337 - MIR SINE MIR -61 147 84 6 1167 192 77 0 0 chr5 76404678 76404704 -76132555 + (GGGGA)n Simple_repeat Simple_repeat 1 26 0 6 1167 225 94 0 0 chr5 76404986 76405018 -76132241 + (TTG)n Simple_repeat Simple_repeat 1 32 0 6 1167 209 192 38 19 chr5 76405200 76405253 -76132006 + GA-rich Low_complexity Low_complexity 2 55 0 6 1167 507 309 128 17 chr5 76405278 76405568 -76131691 - MLT1K LTR MaLR -113 482 161 7 1167 1122 277 74 6 chr5 76406501 76406839 -76130420 - MTE2b LTR MaLR -18 361 1 7 1167 261 0 0 0 chr5 76406887 76406916 -76130343 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 1167 351 251 75 47 chr5 76407053 76407266 -76129993 - Lx9 LINE L1 -1 7643 7425 7 1167 219 221 0 88 chr5 76409242 76409356 -76127903 + T-rich Low_complexity Low_complexity 4 107 0 7 1167 180 0 0 0 chr5 76409360 76409380 -76127879 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7 1167 936 62 108 20 chr5 76409380 76409528 -76127731 - B2_Mm2 SINE B2 -33 162 2 7 1167 313 243 53 13 chr5 76410633 76410708 -76126551 - ID4 SINE ID -2 81 4 7 1167 22 0 0 0 chr5 76411174 76411196 -76126063 + AT_rich Low_complexity Low_complexity 1 22 0 7 1167 432 247 141 88 chr5 76411516 76411778 -76125481 - MER33 DNA MER1_type 0 324 49 7 1167 257 264 0 89 chr5 76413491 76413570 -76123689 + Lx8 LINE L1 7126 7197 -276 7 1167 885 245 55 0 chr5 76413658 76413865 -76123394 + L1MA5 LINE L1 6018 6230 -70 7 1167 216 86 0 0 chr5 76413865 76413900 -76123359 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1167 885 245 55 0 chr5 76413900 76413949 -76123310 + L1MA5 LINE L1 6231 6287 -13 7 1168 800 308 55 23 chr5 76416263 76416519 -76120740 + B4 SINE B4 29 292 0 7 1168 915 115 0 0 chr5 76416537 76416676 -76120583 + (GAAA)n Simple_repeat Simple_repeat 4 142 0 7 1168 200 35 35 0 chr5 76416687 76416716 -76120543 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 7 1168 686 166 9 22 chr5 76416736 76416964 -76120295 + GA-rich Low_complexity Low_complexity 1 224 0 7 1168 389 221 39 0 chr5 76417242 76417319 -76119940 - B1F SINE Alu -17 132 53 7 1168 231 299 11 44 chr5 76417474 76417565 -76119694 + RSINE1 SINE B4 78 165 0 7 1168 310 211 0 0 chr5 76417564 76417621 -76119638 - PB1D10 SINE Alu -49 68 12 7 1168 846 56 0 0 chr5 76417794 76417902 -76119357 + (GGA)n Simple_repeat Simple_repeat 1 108 0 7 1168 254 154 88 44 chr5 76418038 76418106 -76119153 + MTEb LTR MaLR 278 348 -31 7 1168 360 0 0 0 chr5 76419610 76419650 -76117609 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1168 286 287 9 18 chr5 76419999 76420109 -76117150 - PB1D10 SINE Alu -4 113 5 7 1168 234 81 0 0 chr5 76421367 76421404 -76115855 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1168 838 251 3 13 chr5 76421515 76421718 -76115541 + B3A SINE B2 8 210 -6 7 1168 288 0 0 0 chr5 76421978 76422010 -76115249 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 7 1168 315 321 50 35 chr5 76422577 76422777 -76114482 - MIRb SINE MIR -17 251 49 7 1168 582 63 0 0 chr5 76423284 76423363 -76113896 + (TG)n Simple_repeat Simple_repeat 2 80 0 7 1168 4098 82 57 7 chr5 76423980 76424580 -76112679 + Lx LINE L1 6024 6653 -1 7 1168 369 205 8 16 chr5 76425583 76425707 -76111552 + C-rich Low_complexity Low_complexity 3 125 0 7 1168 264 213 0 0 chr5 76425765 76425826 -76111433 + C-rich Low_complexity Low_complexity 4 64 0 7 1168 378 304 161 52 chr5 76425857 76426148 -76111111 + L1MDa LINE L1 137 459 -6174 7 1168 278 323 32 0 chr5 76426171 76426264 -76110995 + MLT1A1 LTR MaLR 3 98 -310 7 1168 470 252 63 25 chr5 76426270 76426429 -76110830 + MLT1A1 LTR MaLR 244 408 0 7 1168 405 103 0 0 chr5 76426498 76426566 -76110693 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1168 603 326 55 36 chr5 76426593 76426956 -76110303 + L1MDa LINE L1 685 1054 -5579 7 1168 594 0 0 0 chr5 76427057 76427123 -76110136 + (TC)n Simple_repeat Simple_repeat 1 66 0 7 1168 633 268 47 9 chr5 76427128 76427343 -76109916 + L1MDa LINE L1 1823 2045 -4588 7 1168 402 226 58 14 chr5 76427413 76427552 -76109707 + L1MDa LINE L1 2165 2309 -4324 7 1168 1218 149 110 51 chr5 76427607 76427861 -76109398 - Lx9 LINE L1 -437 7207 6939 7 1168 1466 223 87 21 chr5 76427873 76428262 -76108997 + Lx9 LINE L1 7220 7634 -10 7 1168 652 269 12 12 chr5 76428346 76428508 -76108751 + RSINE1 SINE B4 3 164 -1 7 1168 1419 306 118 37 chr5 76428530 76430376 -76106883 + L1MDa LINE L1 2556 4558 -1979 7 1168 636 266 84 0 chr5 76430598 76430801 -76106458 - L1MEg LINE L1 -5142 942 723 7 1168 26 0 0 0 chr5 76430818 76430844 -76106415 + AT_rich Low_complexity Low_complexity 1 26 0 7 1168 1265 65 6 0 chr5 76431369 76431539 -76105720 + L1_Mus2 LINE L1 6396 6566 0 7 1168 1011 112 0 0 chr5 76431543 76431695 -76105564 + (GAA)n Simple_repeat Simple_repeat 2 153 0 7 1168 2637 98 95 2 chr5 76432271 76432718 -76104541 - RMER16 LTR ERVK 0 533 1 7 1168 686 151 85 31 chr5 76432914 76433044 -76104215 + B1_Mus1 SINE Alu 12 148 0 7 1168 301 102 34 0 chr5 76433063 76433122 -76104137 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 7 1168 25 0 0 0 chr5 76433738 76433763 -76103496 + AT_rich Low_complexity Low_complexity 1 25 0 7 1168 400 355 60 13 chr5 76434226 76434597 -76102662 - MLT1D LTR MaLR -76 429 7 7 1168 332 242 154 29 chr5 76434650 76434786 -76102473 - RLTR14 LTR ERV1 -6 376 224 7 1168 247 233 17 0 chr5 76435012 76435072 -76102187 + RLTR19C LTR ERVK 36 96 -410 7 1168 281 279 15 0 chr5 76435811 76435879 -76101380 + CT-rich Low_complexity Low_complexity 1 69 0 7 1168 306 229 229 0 chr5 76436027 76436132 -76101127 + MER5A DNA MER1_type 53 181 -8 7 1168 971 54 0 0 chr5 76437408 76437538 -76099721 + B1_Mus1 SINE Alu 19 148 0 7 1168 776 100 8 0 chr5 76437540 76437660 -76099599 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 7 1168 519 254 81 30 chr5 76437916 76438151 -76099108 + MLT2B2 LTR ERVL 304 562 0 7 1168 272 336 37 45 chr5 76438485 76438619 -76098640 - L1ME3 LINE L1 -52 6110 5978 7 1168 1831 128 26 57 chr5 76438686 76439142 -76098117 - RMER17C LTR ERVK -524 434 16 7 1168 304 320 20 13 chr5 76439161 76439313 -76097946 - L1ME3 LINE L1 -636 5808 5656 7 1168 237 33 0 0 chr5 76440032 76440062 -76097197 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 7 1168 21 57 0 0 chr5 76440783 76440818 -76096441 + AT_rich Low_complexity Low_complexity 1 35 0 7 1168 314 174 0 28 chr5 76440818 76440889 -76096370 + (CATA)n Simple_repeat Simple_repeat 2 70 0 7 1168 490 301 113 32 chr5 76440893 76441140 -76096119 + B4A SINE B4 26 292 0 7 1168 1432 80 5 11 chr5 76441198 76441388 -76095871 - B2_Mm1a SINE B2 -4 189 1 7 1168 345 176 504 0 chr5 76442002 76442133 -76095126 + B3A SINE B2 1 197 -1 7 1168 212 289 60 12 chr5 76442673 76442757 -76094502 + B1F SINE Alu 1 88 -61 7 1168 903 258 0 14 chr5 76443071 76443287 -76093972 + B3 SINE B2 1 213 -3 7 1168 207 0 0 0 chr5 76443312 76443335 -76093924 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 7 1168 912 25 0 90 chr5 76446079 76446213 -76091046 + L1Md_F3 LINE L1 6404 6525 -59 7 1168 1210 114 17 6 chr5 76446249 76446426 -76090833 + B2_Mm2 SINE B2 3 181 -14 7 1168 378 0 0 0 chr5 76446427 76446469 -76090790 + (TAA)n Simple_repeat Simple_repeat 2 43 0 7 1168 851 217 58 0 chr5 76446479 76446668 -76090591 + B3 SINE B2 16 215 -1 7 1168 4921 62 3 6 chr5 76446690 76447321 -76089938 + L1Md_F2 LINE L1 5952 6580 -2 7 1168 25 0 0 0 chr5 76447321 76447346 -76089913 + AT_rich Low_complexity Low_complexity 1 25 0 7 1168 633 306 65 45 chr5 76447662 76448080 -76089179 - RLTR23 LTR ERV1 -4 426 1 7 1168 1332 189 160 93 chr5 76448091 76448523 -76088736 - MT2A LTR ERVL -69 464 4 7 1168 225 238 0 0 chr5 76450104 76450146 -76087113 + (CACG)n Simple_repeat Simple_repeat 2 43 0 7 1168 1234 258 41 22 chr5 76450687 76451056 -76086203 - MTEb LTR MaLR -1 378 3 7 1168 533 160 0 9 chr5 76451525 76451632 -76085627 + GA-rich Low_complexity Low_complexity 2 107 0 7 1168 378 61 0 0 chr5 76452508 76452557 -76084702 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1168 357 211 14 0 chr5 76452623 76452694 -76084565 + MER117 DNA MER1_type 97 168 -29 7 1168 216 0 0 0 chr5 76453611 76453635 -76083624 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 7 1168 237 305 76 41 chr5 76453704 76453825 -76083434 - L2b LINE L2 -38 3388 3222 7 1168 543 302 79 88 chr5 76454751 76455158 -76082101 + MLT1C LTR MaLR 61 463 -4 7 1168 240 179 0 18 chr5 76455633 76455690 -76081569 - MER2 DNA MER2_type -183 162 107 7 1168 226 301 43 99 chr5 76455680 76455770 -76081489 + ID_B1 SINE B4 70 221 -2 7 1168 259 211 197 0 chr5 76455770 76455841 -76081418 + PB1 SINE Alu 41 125 -2 7 1168 26 64 0 0 chr5 76455845 76455892 -76081367 + AT_rich Low_complexity Low_complexity 1 47 0 7 1168 1864 100 11 18 chr5 76456850 76457136 -76080123 + Lx3_Mus LINE L1 6718 7001 -8 7 1168 25 0 0 0 chr5 76457136 76457161 -76080098 + AT_rich Low_complexity Low_complexity 1 25 0 7 1168 426 101 0 0 chr5 76457273 76457342 -76079917 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 1168 459 231 19 0 chr5 76457482 76457586 -76079673 - B1_Mur1 SINE Alu -43 106 1 7 1168 206 93 0 85 chr5 76459384 76459431 -76077828 + A-rich Low_complexity Low_complexity 6 48 0 7 1168 279 0 0 0 chr5 76460080 76460111 -76077148 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1168 205 167 0 23 chr5 76462981 76463024 -76074235 - L3 LINE CR1 -3 4486 4445 7 1168 2979 42 11 0 chr5 76464494 76464853 -76072406 + L1Md_F2 LINE L1 6220 6582 0 7 1168 225 150 0 0 chr5 76465701 76465741 -76071518 - MLT2C2 LTR ERVL -424 40 1 7 1168 288 208 8 26 chr5 76466110 76466185 -76071074 + B1F SINE Alu 46 144 -5 7 1168 325 254 14 88 chr5 76467117 76467264 -76069995 + L1ME4a LINE L1 5976 6111 -13 7 1168 668 181 6 0 chr5 76467521 76467692 -76069567 + (CA)n Simple_repeat Simple_repeat 1 172 0 7 1168 464 223 215 7 chr5 76467854 76468003 -76069256 + B3A SINE B2 1 180 -18 7 1168 288 214 0 0 chr5 76468191 76468247 -76069012 - PB1D10 SINE Alu -37 80 25 7 1168 668 197 60 13 chr5 76468309 76468458 -76068801 + B3 SINE B2 48 203 -13 7 1168 535 309 159 26 chr5 76468708 76469047 -76068212 - LTR16B1 LTR ERVL -96 384 1 8 1168 636 223 28 14 chr5 76469232 76469373 -76067886 + B1F1 SINE Alu 2 144 -5 8 1168 30 0 0 0 chr5 76469504 76469534 -76067725 + AT_rich Low_complexity Low_complexity 1 30 0 8 1168 486 0 0 0 chr5 76469863 76469917 -76067342 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1168 420 326 0 17 chr5 76469934 76470297 -76066962 + (TG)n Simple_repeat Simple_repeat 1 356 0 8 1168 340 274 17 0 chr5 76470358 76470475 -76066784 + (TG)n Simple_repeat Simple_repeat 1 119 0 8 1168 447 218 0 0 chr5 76470496 76470638 -76066621 + (TG)n Simple_repeat Simple_repeat 1 142 0 8 1168 480 286 6 22 chr5 76470639 76470894 -76066365 + (TG)n Simple_repeat Simple_repeat 1 250 0 8 1168 188 86 29 0 chr5 76471308 76471343 -76065916 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 8 1168 203 312 22 45 chr5 76472145 76472279 -76064980 - MIRb SINE MIR -8 260 130 8 1168 414 0 0 0 chr5 76473364 76473410 -76063849 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1168 616 264 26 39 chr5 76473410 76473564 -76063695 - B3A SINE B2 -44 154 3 8 1168 376 287 35 23 chr5 76473661 76473832 -76063427 + L1M2 LINE L1 5006 5178 -965 8 1168 28 0 0 0 chr5 76476319 76476347 -76060912 + AT_rich Low_complexity Low_complexity 1 28 0 8 1168 1092 296 78 17 chr5 76476455 76476984 -76060275 + L1MC1 LINE L1 5746 6306 -27 8 1168 3382 32 4 33 chr5 76476984 76477440 -76059819 - RLTR13B1 LTR ERVK 0 893 451 8 1168 3202 58 27 2 chr5 76477432 76477879 -76059380 - RLTR13B3 LTR ERVK -308 621 164 8 1168 3986 12 0 12 chr5 76527879 76528373 -76008886 - MT2_Mm LTR ERVL -5 488 1 1 1168 946 321 71 10 chr5 76528396 76528789 -76008470 + Lx8 LINE L1 6842 7258 -215 2 1168 1164 86 0 0 chr5 76528820 76528982 -76008277 + (GAAA)n Simple_repeat Simple_repeat 4 165 0 3 1168 969 9 0 0 chr5 76528985 76529095 -76008164 + (GGAAA)n Simple_repeat Simple_repeat 1 110 0 4 1168 273 339 61 18 chr5 76529890 76530004 -76007255 + MIRb SINE MIR 9 127 -141 5 1168 263 298 11 35 chr5 76530102 76530189 -76007070 - RLTR20B2 LTR ERVK 0 560 476 6 1168 1807 156 31 38 chr5 76530202 76530661 -76006598 + RLTR31_Mm LTR ERVK 1 410 -151 7 1168 1033 209 0 0 chr5 76530669 76530851 -76006408 - RLTR20B1 LTR ERVK -381 182 1 8 1168 756 196 168 0 chr5 76531176 76531355 -76005904 - B3 SINE B2 -7 209 1 9 1168 722 271 92 47 chr5 76531364 76531825 -76005434 - L1M4c LINE L1 -549 5999 5502 1 1168 705 43 0 0 chr5 76532025 76532118 -76005141 + (GA)n Simple_repeat Simple_repeat 2 94 0 1 1168 390 277 221 11 chr5 76532173 76532363 -76004896 - L1M4c LINE L1 -1210 5166 4937 1 1168 600 287 46 63 chr5 76532383 76532767 -76004492 - L1M4c LINE L1 -3817 2562 2165 1 1168 2839 105 5 5 chr5 76532767 76533170 -76004089 - RLTR9D LTR ERVK 0 403 1 1 1168 351 318 74 58 chr5 76533170 76533329 -76003930 - L1M4c LINE L1 -4220 2164 2008 1 1168 269 339 51 84 chr5 76533706 76533981 -76003278 + B4A SINE B4 3 277 -15 1 1168 369 0 0 0 chr5 76533994 76534035 -76003224 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1168 513 0 0 0 chr5 76534035 76534091 -76003168 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1168 239 320 89 10 chr5 76534241 76534342 -76002917 - MIRb SINE MIR -145 123 15 1 1168 1030 256 100 12 chr5 76535333 76535654 -76001605 + MLT2D LTR ERVL 2 350 -64 1 1168 1251 94 0 0 chr5 76535696 76535876 -76001383 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 1 1168 453 116 0 0 chr5 76535884 76535953 -76001306 + (TGGG)n Simple_repeat Simple_repeat 3 71 0 1 1168 373 276 138 0 chr5 76536229 76536352 -76000907 + MER47B DNA MER2_type 112 251 -167 2 1168 243 0 0 0 chr5 76536477 76536504 -76000755 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1168 381 329 86 0 chr5 76536653 76536830 -76000429 + MIR SINE MIR 43 231 -37 2 1168 616 301 79 5 chr5 76537510 76537724 -75999535 + LTR88c LTR Genie? 61 290 -572 2 1168 450 299 19 6 chr5 76538870 76539028 -75998231 + RSINE1 SINE B4 5 164 -1 2 1168 4095 87 13 2 chr5 76539262 76539816 -75997443 + L1_Mus3 LINE L1 6073 6632 -6 2 1168 21 0 0 0 chr5 76539823 76539844 -75997415 + AT_rich Low_complexity Low_complexity 1 21 0 2 1168 234 91 0 0 chr5 76540146 76540179 -75997080 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1168 240 250 0 0 chr5 76540925 76540989 -75996270 + C-rich Low_complexity Low_complexity 1 64 0 2 1168 206 203 31 51 chr5 76541404 76541499 -75995760 + MIR SINE MIR 118 206 -62 2 1168 1275 143 8 102 chr5 76541754 76542018 -75995241 + ORR1C2 LTR MaLR 143 381 -3 3 1168 289 237 97 0 chr5 76542034 76542127 -75995132 + L1MB1 LINE L1 6065 6166 -2 3 1168 1057 239 26 20 chr5 76542914 76543255 -75994004 + RLTR15 LTR ERVK 1 343 -16 3 1168 351 0 0 0 chr5 76543546 76543585 -75993674 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1168 861 261 0 47 chr5 76543715 76543948 -75993311 + ID_B1 SINE B4 1 222 -2 3 1168 528 187 182 24 chr5 76543948 76544074 -75993185 + B1_Mur1 SINE Alu 4 149 0 3 1168 393 22 0 0 chr5 76544190 76544236 -75993023 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1168 235 321 71 9 chr5 76544855 76544968 -75992291 - MIRc SINE MIR -60 208 89 3 1168 956 193 0 11 chr5 76545556 76545739 -75991520 - URR1B DNA MER1_type -28 197 17 3 1168 331 249 98 108 chr5 76545913 76545927 -75991332 + ORR1D2 LTR MaLR 170 182 -188 3 1168 642 104 0 0 chr5 76545927 76546023 -75991236 + (TG)n Simple_repeat Simple_repeat 2 97 0 4 18 331 249 98 108 chr5 76546023 76546211 -75991048 + ORR1D2 LTR MaLR 183 370 0 3 1169 231 36 0 0 chr5 76546394 76546422 -75990837 + (GA)n Simple_repeat Simple_repeat 2 29 0 4 1169 252 311 65 29 chr5 76546461 76546600 -75990659 + MIRb SINE MIR 40 183 -85 4 1169 303 311 29 0 chr5 76546768 76546871 -75990388 + B1F2 SINE Alu 44 149 0 4 1169 1662 47 0 0 chr5 76546901 76547094 -75990165 - B2_Mm1t SINE B2 0 193 1 4 1169 264 284 29 87 chr5 76547791 76547895 -75989364 - PB1D10 SINE Alu -2 115 18 4 1169 23 0 0 0 chr5 76548134 76548157 -75989102 + AT_rich Low_complexity Low_complexity 1 23 0 4 1169 432 295 42 60 chr5 76548161 76548327 -75988932 + RSINE1 SINE B4 3 165 0 4 1169 651 156 14 7 chr5 76548334 76548476 -75988783 + (TA)n Simple_repeat Simple_repeat 1 143 0 4 1169 411 294 6 61 chr5 76548587 76548750 -75988509 + MER5A1 DNA MER1_type 6 159 -7 4 1169 333 0 0 0 chr5 76548910 76548947 -75988312 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1169 472 222 40 81 chr5 76550450 76550574 -75986685 + PB1D10 SINE Alu 1 116 -1 5 1169 194 295 0 0 chr5 76550745 76550806 -75986453 - L2 LINE L2 -700 2719 2659 5 1169 442 194 0 0 chr5 76550824 76550896 -75986363 - ID4_ SINE ID -10 73 2 5 1169 26 50 0 0 chr5 76550902 76550942 -75986317 + AT_rich Low_complexity Low_complexity 1 40 0 5 1169 249 146 0 0 chr5 76551220 76551268 -75985991 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 5 1169 2114 217 40 106 chr5 76551545 76552199 -75985060 - RMER19C LTR ERVK 0 611 1 5 1169 543 267 171 25 chr5 76552332 76552647 -75984612 - L1M4 LINE L1 -459 5721 5361 5 1169 408 88 0 0 chr5 76553128 76553185 -75984074 + (TATG)n Simple_repeat Simple_repeat 4 60 0 5 1169 674 300 6 129 chr5 76553192 76553525 -75983734 - B4A SINE B4 0 292 1 5 1169 1204 203 5 0 chr5 76554162 76554374 -75982885 + B3 SINE B2 3 215 -1 6 1169 285 29 0 0 chr5 76554780 76554814 -75982445 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 6 1169 288 0 0 0 chr5 76554962 76554994 -75982265 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1169 329 179 45 26 chr5 76554996 76555151 -75982108 + CT-rich Low_complexity Low_complexity 5 162 0 6 1169 225 0 0 0 chr5 76555185 76555210 -75982049 + (GA)n Simple_repeat Simple_repeat 1 25 0 6 1169 357 24 0 0 chr5 76555210 76555251 -75982008 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1169 484 264 21 98 chr5 76555258 76555345 -75981914 - RSINE1 SINE B4 -32 133 57 6 1169 2118 175 84 108 chr5 76555345 76555891 -75981368 + RMER16 LTR ERVK 1 533 0 6 1169 484 264 21 98 chr5 76555891 76555946 -75981313 - RSINE1 SINE B4 -109 56 2 6 1169 274 360 21 14 chr5 76555959 76556100 -75981159 - B1F1 SINE Alu -5 144 3 6 1169 357 290 93 40 chr5 76556127 76556699 -75980560 - L1M5 LINE L1 -602 5638 5022 6 1169 922 292 108 44 chr5 76556843 76557659 -75979600 - L1M5 LINE L1 -1128 5018 4151 6 1169 966 181 6 22 chr5 76557757 76557938 -75979321 + MTC LTR MaLR 66 243 -178 7 1169 360 0 0 0 chr5 76557950 76557990 -75979269 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1169 317 293 24 0 chr5 76558277 76558400 -75978859 - Lx6 LINE L1 -26 7434 7309 7 1169 526 244 0 59 chr5 76558397 76558470 -75978789 + Lx6 LINE L1 7200 7272 -188 7 1169 1449 77 0 20 chr5 76558470 76558668 -75978591 - B2_Mm2 SINE B2 0 195 2 7 1169 526 244 0 59 chr5 76558668 76558729 -75978530 + Lx6 LINE L1 7273 7326 -134 7 1169 716 117 27 27 chr5 76558890 76559039 -75978220 + (TATATG)n Simple_repeat Simple_repeat 6 154 0 7 1169 325 285 0 7 chr5 76559096 76559187 -75978072 - B3A SINE B2 -106 89 2 7 1169 21 57 0 0 chr5 76559191 76559226 -75978033 + AT_rich Low_complexity Low_complexity 1 35 0 7 1169 279 0 0 0 chr5 76559420 76559451 -75977808 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1169 714 244 36 13 chr5 76559594 76559818 -75977441 - RCHARR1 DNA MER1_type 0 974 746 7 1169 255 188 203 0 chr5 76559822 76559891 -75977368 + B3 SINE B2 1 83 -133 7 1169 2853 113 20 25 chr5 76559889 76560399 -75976860 + RLTR28 LTR ERVL 18 524 0 8 1169 245 236 83 0 chr5 76560399 76560453 -75976806 + B2_Mm2 SINE B2 69 128 -67 8 1169 545 191 19 0 chr5 76560423 76560528 -75976731 + B3 SINE B2 110 216 0 7 1169 1126 194 59 88 chr5 76560533 76560604 -75976655 - RCHARR1 DNA MER1_type -237 737 670 7 1169 1173 62 7 0 chr5 76560604 76560750 -75976509 + B1_Mm SINE Alu 1 147 0 8 1169 1126 194 59 88 chr5 76560750 76561052 -75976207 - RCHARR1 DNA MER1_type -305 669 375 7 1169 243 203 0 0 chr5 76561069 76561138 -75976121 + (TATG)n Simple_repeat Simple_repeat 2 70 0 8 1169 818 186 62 29 chr5 76561615 76561825 -75975434 - RLTR11A2 LTR ERVK 0 527 311 8 1169 1409 236 53 20 chr5 76561873 76562081 -75975178 - MYSERV-int LTR ERVK -1834 4716 4493 8 1169 195 42 0 0 chr5 76562081 76562105 -75975154 + (TA)n Simple_repeat Simple_repeat 2 25 0 8 1169 1409 251 70 22 chr5 76562105 76562366 -75974893 - MYSERV-int LTR ERVK -4344 4615 4311 8 1169 416 236 34 60 chr5 76562530 76562647 -75974612 - B1_Mur4 SINE Alu -18 132 19 8 1169 316 281 14 72 chr5 76563040 76563178 -75974081 - RLTR18-int LTR ERVK -512 4849 4720 8 1169 969 186 117 50 chr5 76563181 76563464 -75973795 - MYSERV6-int LTR ERVK -2247 6712 6411 8 1169 239 314 18 62 chr5 76563573 76563685 -75973574 - B1_Mur2 SINE Alu -42 107 1 9 1169 449 179 50 94 chr5 76563686 76563846 -75973413 - MYSERV6-int LTR ERVK -3980 4979 4827 8 1169 278 271 121 71 chr5 76563926 76564298 -75972961 - RLTR12B LTR ERVK 0 568 161 9 1169 1982 202 63 20 chr5 76565031 76565536 -75971723 - RLTR11A2 LTR ERVK 0 527 1 9 1169 1719 158 39 114 chr5 76565558 76566022 -75971237 + RMER15 LTR ERVL 1 429 -146 9 1169 1671 130 73 7 chr5 76566022 76566308 -75970951 + ORR1B1 LTR MaLR 1 305 -89 9 1169 318 283 9 62 chr5 76566327 76566440 -75970819 - RMER10B LTR ERVL 0 398 292 9 1169 2278 109 22 0 chr5 76566555 76566875 -75970384 - ORR1A2 LTR MaLR 0 327 1 9 1169 360 309 21 52 chr5 76566941 76567132 -75970127 - RLTR23 LTR ERV1 0 430 246 9 1169 539 221 47 0 chr5 76567512 76567639 -75969620 + RMER15 LTR ERVL 442 574 -1 9 1169 461 147 151 68 chr5 76567778 76567924 -75969335 - ORR1D2 LTR MaLR 0 370 213 9 1169 251 158 33 50 chr5 76567946 76568006 -75969253 + MTC LTR MaLR 8 66 -355 9 1169 297 276 10 20 chr5 76568927 76569027 -75968232 + RSINE1 SINE B4 45 143 -22 1 1169 183 129 0 0 chr5 76569283 76569314 -75967945 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 1 1169 219 186 0 0 chr5 76570027 76570070 -75967189 + T-rich Low_complexity Low_complexity 1 43 0 1 1169 1214 41 0 13 chr5 76572082 76572231 -75965028 + B1_Mus1 SINE Alu 2 148 0 1 1169 917 198 29 29 chr5 76572750 76572958 -75964301 - B3 SINE B2 -7 209 2 1 1169 1307 83 55 0 chr5 76573722 76573903 -75963356 - B2_Mm2 SINE B2 -4 191 1 1 1169 224 180 32 16 chr5 76573913 76573975 -75963284 + (TTTG)n Simple_repeat Simple_repeat 1 63 0 1 1169 1136 62 7 20 chr5 76573975 76574123 -75963136 - B1_Mus1 SINE Alu -1 147 2 1 1169 1720 120 128 29 chr5 76575348 76575699 -75961560 - ORR1B1 LTR MaLR -8 386 1 1 1169 449 62 0 0 chr5 76575980 76576044 -75961215 + B2_Mm2 SINE B2 1 64 -131 1 1169 404 270 162 13 chr5 76576070 76576224 -75961035 + B4A SINE B4 9 185 -107 1 1169 301 209 75 0 chr5 76576213 76576280 -75960979 - B3A SINE B2 -86 112 41 1 1169 338 263 13 0 chr5 76576334 76576410 -75960849 + B3 SINE B2 1 77 -139 1 1169 361 264 79 47 chr5 76577250 76577367 -75959892 + RSINE1 SINE B4 2 124 -41 1 1169 189 0 0 0 chr5 76577367 76577388 -75959871 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1169 180 0 0 0 chr5 76577887 76577907 -75959352 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1169 1165 61 7 0 chr5 76577914 76578061 -75959198 - B1_Mus1 SINE Alu 0 148 1 1 1169 333 0 0 0 chr5 76578296 76578333 -75958926 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 1 1169 225 0 0 0 chr5 76579784 76579809 -75957450 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1169 1064 273 62 0 chr5 76579989 76580330 -75956929 - ORR1D2 LTR MaLR 0 370 9 1 1169 3625 33 28 5 chr5 76580566 76580992 -75956267 - RLTR10C LTR ERVK 0 436 1 1 1169 416 289 7 34 chr5 76581216 76581363 -75955896 + B1F2 SINE Alu 1 143 -6 1 1169 518 187 53 9 chr5 76582069 76582182 -75955077 - B1F SINE Alu -29 120 3 1 1169 279 210 18 99 chr5 76582085 76582196 -75955063 - MT2B LTR ERVL -344 257 156 1 1169 1151 68 7 0 chr5 76582782 76582928 -75954331 - B1_Mus1 SINE Alu 0 148 2 1 1169 211 322 44 11 chr5 76583115 76583206 -75954053 - MIR SINE MIR -125 137 44 1 1169 198 0 0 0 chr5 76583251 76583273 -75953986 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 1 1169 664 184 0 64 chr5 76583286 76583443 -75953816 - B1_Mur4 SINE Alu -3 147 1 1 1169 516 16 0 0 chr5 76584119 76584180 -75953079 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1169 414 0 0 0 chr5 76584885 76584931 -75952328 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 1 1169 625 249 111 0 chr5 76584950 76585131 -75952128 - ID_B1 SINE B4 0 224 24 1 1169 211 219 24 0 chr5 76585194 76585235 -75952024 - PB1D9 SINE Alu -77 43 2 1 1169 1872 169 154 23 chr5 76585235 76585669 -75951590 - RMER15 LTR ERVL -52 523 33 1 1169 758 50 0 0 chr5 76585726 76585827 -75951432 + B1_Mm SINE Alu 38 138 -9 1 1169 200 59 29 0 chr5 76585827 76585861 -75951398 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1169 972 253 9 0 chr5 76586263 76586484 -75950775 + ID_B1 SINE B4 2 224 0 1 1169 513 0 0 0 chr5 76586492 76586549 -75950710 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1169 477 0 0 0 chr5 76586549 76586601 -75950658 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1169 794 168 0 0 chr5 76587109 76587234 -75950025 + B3 SINE B2 3 127 -89 1 1169 250 324 54 36 chr5 76587465 76587577 -75949682 - RMER15 LTR ERVL -5 570 457 1 1169 1018 131 0 0 chr5 76587699 76587844 -75949415 + B1_Mus2 SINE Alu 2 146 -1 1 1169 1762 318 59 63 chr5 76587946 76588911 -75948348 - Lx8 LINE L1 -324 7149 6189 1 1169 754 287 35 22 chr5 76588998 76589226 -75948033 - RMER15-int LTR ERVL -2770 2229 1999 1 1169 463 332 29 68 chr5 76589426 76589707 -75947552 - ORR1E LTR MaLR -59 300 31 1 1169 592 137 0 10 chr5 76589707 76589803 -75947456 + B1_Mus2 SINE Alu 45 139 -8 1 1169 278 252 36 72 chr5 76589710 76589821 -75947438 + RLTR25B LTR ERVK 450 556 -472 1 1169 546 163 0 0 chr5 76590215 76590313 -75946946 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1169 637 305 19 114 chr5 76590321 76590636 -75946623 - B4 SINE B4 -7 285 1 1 1169 2717 233 76 33 chr5 76591492 76592351 -75944908 - RMER1C Other Other -87 1255 432 1 1169 480 239 17 0 chr5 76592600 76592717 -75944542 + B4A SINE B4 1 119 -173 1 1169 401 202 0 0 chr5 76592725 76592804 -75944455 + RSINE1 SINE B4 68 146 -19 1 1169 228 245 20 0 chr5 76593557 76593606 -75943653 + RSINE1 SINE B4 1 50 -115 1 1169 276 53 0 0 chr5 76594218 76594256 -75943003 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1169 376 299 80 65 chr5 76594432 76594632 -75942627 + B4A SINE B4 8 210 -82 1 1169 180 152 0 0 chr5 76594634 76594667 -75942592 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1169 538 215 9 0 chr5 76595503 76595610 -75941649 - B3A SINE B2 -87 111 4 1 1169 866 237 53 68 chr5 76595617 76595957 -75941302 + MER45R DNA Tip100 740 1074 -507 1 1169 323 281 12 12 chr5 76595965 76596048 -75941211 + ID4_ SINE ID 1 83 0 1 1169 443 268 158 89 chr5 76596124 76596344 -75940915 + MER45R DNA Tip100 1077 1295 -286 1 1169 2336 122 22 30 chr5 76596344 76596714 -75940545 + ORR1B2 LTR MaLR 1 367 0 1 1169 443 268 158 89 chr5 76596714 76596829 -75940430 + MER45R DNA Tip100 1296 1435 -146 1 1169 325 239 14 0 chr5 76596860 76596931 -75940328 + MER45R DNA Tip100 1509 1580 -1 1 1169 2441 165 179 37 chr5 76597196 76597731 -75939528 + RMER19C LTR ERVK 1 611 0 1 1169 359 20 60 0 chr5 76597766 76597816 -75939443 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 1 1169 743 214 80 15 chr5 76598003 76598202 -75939057 + B3 SINE B2 5 216 0 1 1169 3293 33 10 8 chr5 76598206 76598604 -75938655 - L1Md_F2 LINE L1 0 6582 6184 1 1169 207 0 0 0 chr5 76599271 76599294 -75937965 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1 1169 280 303 45 0 chr5 76599542 76599631 -75937628 + MER102b DNA MER1_type 2 94 -247 1 1169 809 236 36 10 chr5 76599628 76599821 -75937438 + B3 SINE B2 12 209 -7 1 1169 714 252 98 35 chr5 76599868 76600123 -75937136 + MLT2C1 LTR ERVL 1 271 -126 1 1169 305 235 0 0 chr5 76600446 76600514 -75936745 - RMER16 LTR ERVK 0 533 466 1 1169 284 229 21 10 chr5 76600515 76600612 -75936647 + L1VL1 LINE L1 1 98 -6324 1 1169 23833 57 0 3 chr5 76600610 76603738 -75933521 + L1Md_A LINE L1 1116 4233 -1650 1 1169 1987 144 12 19 chr5 76604194 76604519 -75932740 - RMER16-int LTR ERVK -1433 3973 3651 1 1169 2983 163 42 32 chr5 76604627 76605553 -75931706 - RLTR19-int LTR ERVK -5250 2156 572 1 1169 1343 177 8 35 chr5 76605544 76605802 -75931457 - RLTR19-int LTR ERVK -4968 438 188 1 1169 321 312 139 6 chr5 76605937 76606095 -75931164 - RLTR19-int LTR ERVK -5208 198 20 1 1169 892 191 120 45 chr5 76606120 76606444 -75930815 - RMER16 LTR ERVK -18 515 1 1 1169 235 227 0 83 chr5 76606587 76606659 -75930600 + MER102b DNA MER1_type 76 143 -198 1 1169 232 304 14 42 chr5 76606793 76606865 -75930394 - L2b LINE L2 -293 3082 3013 1 1169 245 321 79 102 chr5 76607082 76607259 -75930000 - B4A SINE B4 -118 174 2 1 1169 218 273 45 0 chr5 76607260 76607326 -75929933 - L2b LINE L2 -565 2854 2786 1 1169 395 270 54 0 chr5 76607348 76607459 -75929800 + PB1D10 SINE Alu 1 117 0 1 1169 188 122 0 24 chr5 76607482 76607524 -75929735 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1169 405 0 0 0 chr5 76608507 76608552 -75928707 + (TATG)n Simple_repeat Simple_repeat 3 47 0 1 1169 1490 202 80 26 chr5 76608841 76609267 -75927992 - RLTR11A2 LTR ERVK -78 449 1 1 1169 387 257 0 27 chr5 76609618 76609730 -75927529 - L1_Mur3 LINE L1 -1392 4488 4380 1 1169 276 30 0 0 chr5 76609730 76609763 -75927496 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1169 533 15 15 0 chr5 76609763 76609828 -75927431 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1169 806 243 90 0 chr5 76609829 76610051 -75927208 - L1M2 LINE L1 -1898 4245 4004 1 1169 473 287 98 20 chr5 76610055 76610208 -75927051 + Lx8 LINE L1 7246 7410 -63 1 1169 369 0 0 0 chr5 76610226 76610267 -75926992 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 1169 799 55 0 0 chr5 76610267 76610376 -75926883 - B1_Mm SINE Alu -3 144 36 1 1169 269 188 0 99 chr5 76610313 76610384 -75926875 - RLTR25A LTR ERVK -531 572 509 1 1169 231 36 0 0 chr5 76610470 76610498 -75926761 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1 1169 1161 78 0 0 chr5 76610499 76610640 -75926619 - B1_Mus2 SINE Alu -6 141 1 1 1169 279 0 0 0 chr5 76612191 76612222 -75925037 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1169 27 29 0 0 chr5 76613172 76613206 -75924053 + GC_rich Low_complexity Low_complexity 1 34 0 1 1169 23 33 0 0 chr5 76613246 76613276 -75923983 + GC_rich Low_complexity Low_complexity 1 30 0 1 1169 183 42 0 0 chr5 76613893 76613917 -75923342 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1169 220 305 44 87 chr5 76614610 76614793 -75922466 + L3 LINE CR1 4234 4408 -81 1 1169 1189 41 7 7 chr5 76615246 76615393 -75921866 - B1_Mm SINE Alu 0 147 1 1 1169 333 0 0 0 chr5 76615675 76615712 -75921547 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1169 217 234 0 0 chr5 76618197 76618244 -75919015 + PB1D9 SINE Alu 71 117 -3 1 1169 201 39 0 0 chr5 76618273 76618299 -75918960 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1169 447 68 0 0 chr5 76618794 76618853 -75918406 + (TCC)n Simple_repeat Simple_repeat 2 60 0 1 1169 388 287 77 29 chr5 76619713 76619921 -75917338 - MLT2C2 LTR ERVL -246 218 1 1 1169 1653 104 104 0 chr5 76620528 76620815 -75916444 - ORR1A2 LTR MaLR -8 319 3 1 1169 675 283 83 0 chr5 76621944 76622124 -75915135 + B3A SINE B2 1 195 -3 1 1169 320 342 33 26 chr5 76622256 76622409 -75914850 + MER58A DNA MER1_type 21 174 -50 1 1169 1226 48 0 0 chr5 76622609 76622756 -75914503 - B1_Mus2 SINE Alu 0 147 1 2 1169 498 310 19 0 chr5 76622818 76622973 -75914286 - RSINE1 SINE B4 -4 161 4 2 1169 207 100 0 0 chr5 76623485 76623515 -75913744 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 2 1169 218 229 21 0 chr5 76623865 76623913 -75913346 - MIR SINE MIR -201 61 13 2 1169 1718 188 14 92 chr5 76624045 76624109 -75913150 - ORR1B1 LTR MaLR -5 389 355 2 1169 1038 102 7 7 chr5 76624109 76624257 -75913002 - B1_Mus1 SINE Alu 0 148 1 2 1169 1718 188 14 92 chr5 76624257 76624614 -75912645 - ORR1B1 LTR MaLR -40 354 1 2 1169 236 231 82 41 chr5 76624828 76624950 -75912309 + Lx9 LINE L1 6958 7084 -560 2 1169 589 298 46 7 chr5 76625139 76625291 -75911968 - RSINE1 SINE B4 -2 163 6 2 1169 297 0 0 0 chr5 76625309 76625342 -75911917 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1169 1660 148 14 3 chr5 76625409 76625694 -75911565 + ORR1A4 LTR MaLR 1 288 -41 2 1169 383 73 0 0 chr5 76626938 76626993 -75910266 + ORR1A4 LTR MaLR 272 326 0 2 1169 1450 49 0 27 chr5 76627847 76628035 -75909224 - B2_Mm2 SINE B2 -12 183 1 2 1169 207 0 0 0 chr5 76628276 76628299 -75908960 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2 1169 25 31 0 0 chr5 76628303 76628335 -75908924 + AT_rich Low_complexity Low_complexity 1 32 0 2 1169 551 210 133 97 chr5 76628850 76629045 -75908214 - B3 SINE B2 -6 210 9 2 1169 370 259 101 29 chr5 76629451 76629590 -75907669 + Lx8 LINE L1 7047 7195 -278 2 1169 1240 34 0 7 chr5 76630235 76630382 -75906877 + B1_Mus2 SINE Alu 2 147 0 2 1169 240 170 0 0 chr5 76630663 76630716 -75906543 + T-rich Low_complexity Low_complexity 1 53 0 2 1169 405 330 121 18 chr5 76630729 76631001 -75906258 + Tigger7 DNA MER2_type 41 340 -2151 2 1169 348 235 123 117 chr5 76631394 76631548 -75905711 - B4A SINE B4 -131 161 7 2 1169 189 74 0 0 chr5 76631779 76631806 -75905453 + (CAGA)n Simple_repeat Simple_repeat 3 29 0 2 1169 294 244 34 34 chr5 76632540 76632629 -75904630 - L1MC4 LINE L1 -1280 6762 6674 2 1169 180 26 48 71 chr5 76634179 76634221 -75903038 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 2 1169 808 261 94 4 chr5 76635726 76635991 -75901268 + MTE2b LTR MaLR 78 366 -13 2 1169 309 109 0 0 chr5 76639945 76639991 -75897268 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 2 1169 24 32 0 0 chr5 76641212 76641243 -75896016 + AT_rich Low_complexity Low_complexity 1 31 0 2 1169 308 305 74 0 chr5 76646266 76646361 -75890898 + B4 SINE B4 108 209 -83 2 1169 1267 143 93 4 chr5 76646361 76646607 -75890652 - RMER4B LTR ERVK 0 585 318 2 1169 39804 34 0 0 chr5 76646621 76652032 -75885227 - L1Md_T LINE L1 0 6582 1170 2 1169 5770 161 29 35 chr5 76652038 76653372 -75883887 - L1Md_T LINE L1 -5411 1205 99 2 1169 1460 126 153 3 chr5 76653373 76653660 -75883599 - RMER4B LTR ERVK -255 330 1 2 1169 189 94 0 0 chr5 76653671 76653703 -75883556 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1169 234 296 101 9 chr5 76653776 76653885 -75883374 + MIRb SINE MIR 29 147 -121 2 1169 505 269 135 0 chr5 76654580 76654721 -75882538 - RSINE1 SINE B4 -4 161 2 2 1169 216 342 153 16 chr5 76655203 76655393 -75881866 - MIRb SINE MIR -26 242 27 2 1169 300 158 0 0 chr5 76656038 76656095 -75881164 + (CTG)n Simple_repeat Simple_repeat 1 57 0 2 1169 1152 82 0 0 chr5 76656724 76656871 -75880388 + B1_Mus1 SINE Alu 2 148 0 2 1169 210 296 14 0 chr5 76657684 76657755 -75879504 - ID4 SINE ID -11 72 1 2 1169 29 0 0 0 chr5 76657942 76657971 -75879288 + AT_rich Low_complexity Low_complexity 1 29 0 2 1169 1067 55 0 76 chr5 76657971 76658128 -75879131 - B1_Mus1 SINE Alu 0 148 4 2 1169 1233 108 5 31 chr5 76658131 76658323 -75878936 - B2_Mm2 SINE B2 -7 188 2 2 1169 21 0 0 0 chr5 76659121 76659142 -75878117 + AT_rich Low_complexity Low_complexity 1 21 0 2 1169 499 281 56 50 chr5 76659422 76659583 -75877676 + RSINE1 SINE B4 4 165 0 2 1169 207 100 0 0 chr5 76659583 76659613 -75877646 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1169 236 200 254 0 chr5 76659640 76659695 -75877564 - ID SINE ID -151 73 5 2 1169 240 159 28 28 chr5 76659717 76659788 -75877471 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 2 1169 270 0 0 0 chr5 76660327 76660357 -75876902 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1169 243 0 0 0 chr5 76660909 76660936 -75876323 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1169 225 0 0 0 chr5 76661030 76661055 -75876204 + (TGGGGG)n Simple_repeat Simple_repeat 3 27 0 2 1169 303 214 0 0 chr5 76662167 76662223 -75875036 - RSINE1 SINE B4 -17 148 93 2 1169 580 152 152 0 chr5 76662281 76662406 -75874853 + B1_Mur1 SINE Alu 6 149 0 2 1169 370 247 0 31 chr5 76662593 76662689 -75874570 + ID_B1 SINE B4 130 222 -2 2 1169 198 0 0 0 chr5 76663204 76663226 -75874033 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2 1169 402 235 10 10 chr5 76663227 76663326 -75873933 - B1F2 SINE Alu -9 140 42 2 1169 519 280 98 0 chr5 76664129 76664261 -75872998 - ID_B1 SINE B4 0 224 80 2 1169 183 42 0 0 chr5 76665017 76665041 -75872218 + (TTCTC)n Simple_repeat Simple_repeat 4 27 0 2 1169 528 193 28 0 chr5 76665673 76665782 -75871477 + B3 SINE B2 86 197 -19 2 1169 309 325 21 91 chr5 76666256 76666442 -75870817 + B4 SINE B4 2 174 -118 2 1169 285 29 0 0 chr5 76666453 76666487 -75870772 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1169 544 183 269 27 chr5 76666602 76666893 -75870366 + L1MB3 LINE L1 4936 5300 -846 2 1169 305 324 80 18 chr5 76666927 76667040 -75870219 - PB1D7 SINE Alu 0 120 1 2 1169 216 326 60 20 chr5 76667040 76667140 -75870119 + PB1D10 SINE Alu 14 117 0 2 1169 541 231 68 15 chr5 76667164 76667296 -75869963 + ID_B1 SINE B4 86 224 0 2 1169 1027 50 65 0 chr5 76667297 76667436 -75869823 + B1_Mus1 SINE Alu 1 148 0 2 1169 212 230 0 39 chr5 76667436 76667513 -75869746 + A-rich Low_complexity Low_complexity 2 75 0 2 1169 285 219 165 48 chr5 76667538 76667685 -75869574 + L1MB3 LINE L1 5319 5481 -687 2 1169 410 196 36 73 chr5 76667690 76667800 -75869459 + B1_Mur1 SINE Alu 44 149 0 2 1169 895 297 118 18 chr5 76667831 76668441 -75868818 + L1MB3 LINE L1 5483 6153 -30 2 1169 3163 46 8 2 chr5 76670132 76670526 -75866733 + MTA_Mm LTR MaLR 1 396 0 2 1169 22 0 0 0 chr5 76671120 76671142 -75866117 + AT_rich Low_complexity Low_complexity 1 22 0 2 1169 236 279 15 76 chr5 76672328 76672394 -75864865 + ID SINE ID 12 73 -151 2 1169 607 199 177 27 chr5 76672700 76672886 -75864373 - B3 SINE B2 0 216 3 2 1169 314 272 153 6 chr5 76673287 76673455 -75863804 + MIR SINE MIR 19 208 -60 2 1169 512 232 238 0 chr5 76673684 76673852 -75863407 + B3 SINE B2 3 210 -6 2 1169 181 345 51 34 chr5 76675787 76675904 -75861355 + L2 LINE L2 2256 2374 -1045 2 1169 1059 45 22 0 chr5 76676017 76676151 -75861108 - B1_Mus1 SINE Alu -10 138 2 2 1169 21 0 0 0 chr5 76676322 76676343 -75860916 + AT_rich Low_complexity Low_complexity 1 21 0 2 1169 29 0 0 0 chr5 76676847 76676876 -75860383 + AT_rich Low_complexity Low_complexity 1 29 0 2 1169 288 0 0 0 chr5 76677076 76677108 -75860151 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 146 714 125 0 0 chr5 76677108 76677220 -75860039 + (CA)n Simple_repeat Simple_repeat 2 113 0 2 1170 1646 251 44 37 chr5 76678472 76679089 -75858170 + Lx9 LINE L1 6818 7438 -206 2 1170 1987 68 4 0 chr5 76679089 76679355 -75857904 + MTB LTR MaLR 9 275 -125 2 1170 316 212 65 13 chr5 76679381 76679534 -75857725 + Lx9 LINE L1 7484 7644 0 2 1170 190 219 175 10 chr5 76680341 76680438 -75856821 - L3 LINE CR1 -3497 992 880 2 1170 1442 58 11 5 chr5 76680493 76680683 -75856576 + B2_Mm1t SINE B2 2 192 -1 2 1170 577 216 17 35 chr5 76680817 76680932 -75856327 + B3 SINE B2 23 135 -81 2 1170 374 229 48 0 chr5 76681038 76681121 -75856138 - B3A SINE B2 -111 87 1 2 1170 310 280 0 29 chr5 76681360 76681480 -75855779 - ID4 SINE ID -36 116 4 2 1170 627 217 113 54 chr5 76681839 76682003 -75855256 + B3A SINE B2 2 179 -19 2 1170 450 0 0 0 chr5 76682003 76682053 -75855206 + (CATA)n Simple_repeat Simple_repeat 4 53 0 2 1170 627 217 113 54 chr5 76682053 76682073 -75855186 + B3A SINE B2 180 196 -2 2 1170 193 379 0 0 chr5 76682427 76682485 -75854774 + MIRm SINE MIR 216 273 -3 2 1170 219 358 147 29 chr5 76684764 76684855 -75852404 - ID_B1 SINE B4 -34 190 1 2 1170 279 354 0 0 chr5 76684855 76684934 -75852325 - ID4 SINE ID -4 79 1 2 1170 616 272 32 0 chr5 76686390 76686548 -75850711 + RSINE1 SINE B4 3 165 0 2 1170 21 0 0 0 chr5 76686561 76686582 -75850677 + AT_rich Low_complexity Low_complexity 1 21 0 2 1170 16650 93 26 4 chr5 76687102 76690309 -75846950 - L1_Mus3 LINE L1 0 6638 3363 2 1170 440 273 124 40 chr5 76691052 76691254 -75846005 + MLT1A0 LTR MaLR 19 237 -128 2 1170 456 171 12 47 chr5 76692482 76692568 -75844691 - PB1D10 SINE Alu 0 117 35 2 1170 374 70 35 0 chr5 76692649 76692706 -75844553 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 2 1170 1221 48 0 0 chr5 76692717 76692863 -75844396 - B1_Mus1 SINE Alu -2 146 1 2 1170 193 281 11 89 chr5 76693324 76693414 -75843845 - L2b LINE L2 -5 3370 3288 2 1170 260 286 177 7 chr5 76694567 76694708 -75842551 + L2c LINE L2 3222 3386 -1 2 1170 1178 48 7 0 chr5 76695023 76695169 -75842090 - B1_Mus2 SINE Alu 0 147 1 2 1170 26 50 0 0 chr5 76695317 76695357 -75841902 + AT_rich Low_complexity Low_complexity 1 40 0 2 1170 283 217 29 0 chr5 76696493 76696562 -75840697 + MER5A1 DNA MER1_type 96 166 0 2 1170 1200 88 64 32 chr5 76697077 76697265 -75839994 + B2_Mm2 SINE B2 2 195 0 2 1170 699 284 29 29 chr5 76699131 76699305 -75837954 - B3 SINE B2 -10 206 33 3 1170 1231 207 81 3 chr5 76699330 76699658 -75837601 + MTD LTR MaLR 3 419 0 3 1170 329 325 121 45 chr5 76699770 76699855 -75837404 - HAL1 LINE L1 -377 2130 2041 3 1170 893 256 170 6 chr5 76699855 76700173 -75837086 + ORR1D1 LTR MaLR 1 370 -4 3 1170 329 325 121 45 chr5 76700173 76700442 -75836817 - HAL1 LINE L1 -467 2040 1749 3 1170 336 332 184 14 chr5 76700721 76700944 -75836315 - HAL1 LINE L1 -2140 367 107 3 1170 1025 121 29 6 chr5 76701028 76701202 -75836057 - URR1A DNA MER1_type 0 226 49 3 1170 183 184 0 0 chr5 76701993 76702031 -75835228 + CT-rich Low_complexity Low_complexity 2 39 0 3 1170 202 318 15 0 chr5 76702138 76702204 -75835055 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 3 1170 588 276 19 31 chr5 76702217 76702378 -75834881 - B4A SINE B4 -131 161 3 3 1170 1648 210 102 63 chr5 76703269 76703827 -75833432 + Lx7 LINE L1 7105 7684 -12 3 1170 345 304 80 60 chr5 76704221 76704557 -75832702 + L1M2 LINE L1 2149 2491 -3652 3 1170 431 256 178 0 chr5 76704571 76704790 -75832469 + L1M2 LINE L1 2562 2819 -3324 3 1170 2142 118 15 3 chr5 76704874 76705198 -75832061 + IAPLTR1a_Mm LTR ERVK 1 328 -9 3 1170 296 119 56 69 chr5 76705208 76705280 -75831979 + IAPEz-int LTR ERVK 3 73 -1914 3 1170 10334 111 108 31 chr5 76705279 76707443 -75829816 + IAPEz-int LTR ERVK 17 2345 -4136 3 1170 368 89 0 0 chr5 76707442 76707498 -75829761 + IAPEz-int LTR ERVK 2719 2774 -3707 3 1170 2974 20 0 0 chr5 76707496 76707853 -75829406 + IAPEz-int LTR ERVK 4001 4357 -2124 3 1170 5579 59 13 18 chr5 76707844 76708619 -75828640 + IAPEz-int LTR ERVK 5709 6479 -2 3 1170 2142 118 15 3 chr5 76708621 76708945 -75828314 + IAPLTR1a_Mm LTR ERVK 1 328 -9 3 1170 278 281 142 51 chr5 76709127 76709614 -75827645 + L1M2 LINE L1 3068 3598 -2542 3 1170 397 286 45 69 chr5 76709770 76710055 -75827204 + MTEb LTR MaLR 18 305 -74 3 1170 859 253 34 40 chr5 76710074 76710308 -75826951 + ID_B1 SINE B4 7 244 -48 3 1170 236 255 213 0 chr5 76710320 76710414 -75826845 + L1M5 LINE L1 5606 5719 -405 3 1170 21 0 0 0 chr5 76710681 76710702 -75826557 + AT_rich Low_complexity Low_complexity 1 21 0 3 1170 229 286 24 12 chr5 76711639 76711724 -75825535 + (TATG)n Simple_repeat Simple_repeat 1 86 0 3 1170 1713 247 64 30 chr5 76712013 76712513 -75824746 + Lx5 LINE L1 6527 7043 -7 3 1170 1306 61 0 0 chr5 76712740 76712903 -75824356 + B2_Mm2 SINE B2 2 164 -31 3 1170 486 0 0 0 chr5 76712986 76713040 -75824219 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1170 380 171 89 1 chr5 76713289 76713418 -75823841 - L1MEf LINE L1 -5157 1043 871 3 1170 343 327 9 26 chr5 76713654 76713767 -75823492 - L1MEf LINE L1 -5656 544 434 3 1170 195 42 0 0 chr5 76713946 76713970 -75823289 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1170 222 118 0 0 chr5 76714542 76714576 -75822683 + (CGTG)n Simple_repeat Simple_repeat 2 35 0 3 1170 216 284 76 1 chr5 76714946 76715035 -75822224 - MIRb SINE MIR -28 240 143 3 1170 829 216 80 25 chr5 76715191 76715390 -75821869 - B3 SINE B2 -6 210 1 3 1170 532 225 138 68 chr5 76715442 76715842 -75821417 + L1MD LINE L1 4574 5001 -1145 3 1170 488 244 33 25 chr5 76715902 76716024 -75821235 - B3A SINE B2 -75 123 1 3 1170 7203 140 90 19 chr5 76716227 76717894 -75819365 + Lx5 LINE L1 5256 7050 0 3 1170 1243 34 0 0 chr5 76717899 76718046 -75819213 + B1_Mus2 SINE Alu 1 147 0 3 1170 231 114 0 0 chr5 76718046 76718090 -75819169 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1170 1704 210 40 92 chr5 76718399 76718897 -75818362 + RMER19C LTR ERVK 140 611 0 3 1170 239 330 68 0 chr5 76719227 76719315 -75817944 + PB1D10 SINE Alu 1 94 -23 3 1170 571 238 164 39 chr5 76719372 76719604 -75817655 + MLT1A0 LTR MaLR 1 261 -104 3 1170 322 251 120 150 chr5 76719677 76719977 -75817282 + B4 SINE B4 2 292 0 3 1170 300 150 12 24 chr5 76719977 76720059 -75817200 + (CA)n Simple_repeat Simple_repeat 1 81 0 3 1170 1335 95 0 36 chr5 76720965 76721161 -75816098 - B2_Mm2 SINE B2 -5 190 2 3 1170 6347 53 1 22 chr5 76721431 76722254 -75815005 + L1_Mus2 LINE L1 5759 6564 -2 3 1170 22 80 0 0 chr5 76722258 76722308 -75814951 + AT_rich Low_complexity Low_complexity 1 50 0 3 1170 263 248 95 122 chr5 76722435 76722582 -75814677 + L1M3 LINE L1 3560 3702 -2438 3 1170 391 304 128 15 chr5 76723285 76723489 -75813770 + L1M3 LINE L1 5542 5768 -421 3 1170 474 309 89 30 chr5 76723567 76723928 -75813331 + L1MA6 LINE L1 5918 6299 -1 3 1170 22 0 0 0 chr5 76724461 76724483 -75812776 + AT_rich Low_complexity Low_complexity 1 22 0 3 1170 627 151 45 98 chr5 76724721 76724828 -75812431 + B1_Mur1 SINE Alu 24 134 -15 3 1170 234 0 0 0 chr5 76724828 76724854 -75812405 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 3 1170 627 151 45 98 chr5 76724854 76724878 -75812381 + B1_Mur1 SINE Alu 135 148 -1 3 1170 1074 281 88 31 chr5 76725036 76725579 -75811680 + L1ME1 LINE L1 5262 5835 -344 3 1170 316 228 51 0 chr5 76726746 76726825 -75810434 + MTEa LTR MaLR 290 372 -7 3 1170 597 213 271 7 chr5 76726828 76727110 -75810149 + L1MD LINE L1 2553 2901 -3245 3 1170 242 367 22 11 chr5 76727118 76727209 -75810050 + PB1 SINE Alu 1 92 -35 3 1170 455 252 139 1 chr5 76727324 76727554 -75809705 + L1MD LINE L1 3046 3305 -2841 3 1170 1606 114 9 0 chr5 76727554 76727773 -75809486 + URR1B DNA MER1_type 5 225 0 3 1170 345 271 142 99 chr5 76727773 76727901 -75809358 + L1MD LINE L1 3302 3418 -2728 3 1170 328 262 0 24 chr5 76727967 76728049 -75809210 + ID4 SINE ID 4 83 0 3 1170 316 255 18 97 chr5 76728801 76728914 -75808345 + PB1D10 SINE Alu 13 116 -1 3 1170 41 21 0 0 chr5 76728958 76729006 -75808253 + AT_rich Low_complexity Low_complexity 1 48 0 3 1170 22 0 0 0 chr5 76729092 76729114 -75808145 + AT_rich Low_complexity Low_complexity 1 22 0 3 1170 1161 211 9 19 chr5 76729157 76729370 -75807889 + B3 SINE B2 1 211 -5 3 1170 710 231 0 47 chr5 76730881 76731031 -75806228 + B1F SINE Alu 7 149 0 3 1170 281 222 10 0 chr5 76731434 76731533 -75805726 + (CA)n Simple_repeat Simple_repeat 1 100 0 3 1170 420 111 0 0 chr5 76732072 76732135 -75805124 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1170 27 29 0 0 chr5 76732937 76732971 -75804288 + GC_rich Low_complexity Low_complexity 1 34 0 3 1170 239 306 17 29 chr5 76733268 76733443 -75803816 + C-rich Low_complexity Low_complexity 1 173 0 3 1170 23 0 0 0 chr5 76733630 76733653 -75803606 + GC_rich Low_complexity Low_complexity 1 23 0 3 1170 332 43 22 0 chr5 76735356 76735402 -75801857 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1170 22 35 0 0 chr5 76735582 76735611 -75801648 + AT_rich Low_complexity Low_complexity 1 29 0 3 1170 3172 181 138 34 chr5 76735937 76736750 -75800509 - Lx9 LINE L1 -8 7636 6740 3 1170 1204 49 0 7 chr5 76736783 76736927 -75800332 - B1_Mus1 SINE Alu -1 147 5 3 1170 237 340 28 19 chr5 76737432 76737540 -75799719 + L2 LINE L2 2333 2441 -978 3 1170 296 270 27 0 chr5 76738728 76738802 -75798457 - PB1D10 SINE Alu -8 109 34 3 1170 263 178 0 0 chr5 76739447 76739492 -75797767 + PB1 SINE Alu 78 122 -5 3 1170 274 336 33 0 chr5 76739624 76739746 -75797513 - MER5A1 DNA MER1_type 0 166 41 3 1170 188 0 74 0 chr5 76740043 76740070 -75797189 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1170 1174 73 0 0 chr5 76740070 76740207 -75797052 - B1_Mus1 SINE Alu -10 138 2 3 1170 958 251 14 5 chr5 76740383 76740591 -75796668 + B3 SINE B2 1 210 -6 3 1170 499 319 82 15 chr5 76740847 76741114 -75796145 + B4A SINE B4 2 286 -6 3 1170 525 213 133 108 chr5 76741716 76741874 -75795385 + RSINE1 SINE B4 4 165 0 3 1170 25 0 0 0 chr5 76741883 76741908 -75795351 + AT_rich Low_complexity Low_complexity 1 25 0 3 1170 355 280 13 0 chr5 76742062 76742137 -75795122 + B1F SINE Alu 3 78 -71 3 1170 218 331 18 11 chr5 76742137 76742151 -75795108 + B4A SINE B4 106 171 -53 3 1170 210 45 22 43 chr5 76742247 76742293 -75794966 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 3 1170 363 320 94 76 chr5 76743077 76743459 -75793800 + L1MB3 LINE L1 5440 5829 -354 3 1170 272 277 76 38 chr5 76743459 76743564 -75793695 + PB1D10 SINE Alu 2 110 -7 3 1170 250 364 45 0 chr5 76743911 76743977 -75793282 + AluG_3 SINE Alu 152 220 -91 3 1170 340 296 0 0 chr5 76744290 76744372 -75792887 + ID2 SINE ID 12 93 -59 3 1170 234 368 0 11 chr5 76744372 76744460 -75792799 + L1M5 LINE L1 5446 5532 -708 3 1170 887 227 202 72 chr5 76744503 76744835 -75792424 - MTE2a LTR MaLR -3 376 2 3 1170 201 132 0 0 chr5 76745141 76745179 -75792080 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1170 1148 264 104 34 chr5 76745215 76745603 -75791656 + L1MB3 LINE L1 5565 5991 -192 3 1170 2514 108 15 3 chr5 76745603 76745945 -75791314 + ORR1A1 LTR MaLR 1 346 0 3 1170 1148 264 104 34 chr5 76745945 76746057 -75791202 + L1MB3 LINE L1 5992 6100 -83 3 1170 596 241 92 41 chr5 76746497 76746692 -75790567 + B3 SINE B2 5 209 -7 3 1170 509 237 113 14 chr5 76747754 76747895 -75789364 + ID_B1 SINE B4 33 187 -37 3 1170 643 282 23 6 chr5 76748396 76748567 -75788692 - B3A SINE B2 -18 180 7 3 1170 2133 153 21 8 chr5 76748795 76749177 -75788082 + RMER15 LTR ERVL 1 387 -188 3 1170 614 225 101 20 chr5 76749151 76749376 -75787883 + MTE2b LTR MaLR 100 366 -13 3 1170 716 301 0 12 chr5 76749690 76749855 -75787404 - RSINE1 SINE B4 0 165 3 3 1170 460 375 6 12 chr5 76749855 76750025 -75787234 + MER74A LTR ERVL 18 186 -372 3 1170 637 73 21 0 chr5 76750025 76750121 -75787138 + (TTCTC)n Simple_repeat Simple_repeat 4 101 0 3 1170 455 308 25 0 chr5 76750122 76750242 -75787017 - PB1 SINE Alu -2 125 3 3 1170 758 265 106 4 chr5 76750295 76750530 -75786729 + MER74A LTR ERVL 215 473 -85 3 1170 340 298 122 32 chr5 76750892 76751048 -75786211 - MLT1N2 LTR MaLR -30 532 363 3 1170 198 91 0 0 chr5 76751308 76751341 -75785918 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1170 539 178 30 0 chr5 76751974 76752075 -75785184 + PB1D9 SINE Alu 17 120 0 3 1170 1056 172 89 20 chr5 76752121 76752323 -75784936 - B3 SINE B2 0 216 1 3 1170 758 283 128 15 chr5 76752502 76752775 -75784484 - ORR1D2 LTR MaLR -40 330 27 3 1170 896 284 100 23 chr5 76752854 76753294 -75783965 + L1M4c LINE L1 1074 1547 -4837 3 1170 358 295 48 71 chr5 76754373 76754541 -75782718 + RSINE1 SINE B4 2 165 0 3 1170 248 278 43 164 chr5 76754754 76754870 -75782389 + MLT1E1A LTR MaLR 313 414 -266 4 1170 321 137 92 184 chr5 76754821 76754919 -75782340 + B1_Mur4 SINE Alu 52 140 -10 4 1170 331 213 23 54 chr5 76755048 76755177 -75782082 + A-rich Low_complexity Low_complexity 2 126 0 4 1170 22 0 0 0 chr5 76755197 76755219 -75782040 + AT_rich Low_complexity Low_complexity 1 22 0 4 1170 682 289 12 0 chr5 76755648 76755821 -75781438 + B3 SINE B2 6 180 -36 4 1170 381 195 37 0 chr5 76755826 76755908 -75781351 - MTD LTR MaLR 0 419 335 4 1170 266 247 130 18 chr5 76756238 76756407 -75780852 - L1M3 LINE L1 -1630 4510 4323 4 1170 258 149 21 0 chr5 76757192 76757239 -75780020 - MER57A-int LTR ERV1 -5040 1147 1100 4 1170 510 17 0 0 chr5 76757590 76757649 -75779610 + (TC)n Simple_repeat Simple_repeat 1 59 0 4 1170 3981 35 5 0 chr5 76757790 76758224 -75779035 + RLTR10C LTR ERVK 1 436 0 4 1170 854 214 45 17 chr5 76759221 76759397 -75777862 + B3 SINE B2 25 205 -11 4 1170 279 0 0 0 chr5 76759535 76759566 -75777693 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1170 433 288 45 0 chr5 76759566 76759677 -75777582 - RSINE1 SINE B4 -41 124 9 4 1170 973 157 7 13 chr5 76760484 76760633 -75776626 - B1_Mus1 SINE Alu 0 148 1 4 1170 439 179 84 0 chr5 76760771 76760866 -75776393 + PB1D7 SINE Alu 18 120 0 4 1170 1322 113 43 0 chr5 76761318 76761504 -75775755 - B2_Mm2 SINE B2 0 195 2 4 1170 448 271 19 0 chr5 76762203 76762310 -75774949 - PB1D10 SINE Alu -1 116 8 4 1170 1192 101 63 39 chr5 76763271 76763477 -75773782 - Lx LINE L1 -18 6636 6426 4 1170 312 27 0 0 chr5 76764055 76764092 -75773167 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1170 506 308 33 55 chr5 76764099 76764281 -75772978 - B3A SINE B2 -17 181 4 4 1170 256 170 19 0 chr5 76764302 76764355 -75772904 - ID_B1 SINE B4 -8 216 163 4 1170 456 308 7 46 chr5 76764979 76765132 -75772127 - MER5A DNA MER1_type -14 175 29 4 1170 502 214 182 0 chr5 76765473 76765599 -75771660 + MER2B DNA MER2_type 188 336 0 4 1170 721 244 41 2 chr5 76765682 76765861 -75771398 - B3A SINE B2 0 216 26 4 1170 244 319 13 80 chr5 76768141 76768216 -75769043 - ID4 SINE ID -7 76 7 4 1170 231 36 0 0 chr5 76768522 76768550 -75768709 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1170 1122 58 65 0 chr5 76769532 76769671 -75767588 - B1_Mus1 SINE Alu 0 148 1 4 1170 252 0 0 0 chr5 76769921 76769949 -75767310 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 4 1170 253 246 81 14 chr5 76770807 76770881 -75766378 - ID4 SINE ID -3 80 2 4 1170 6331 131 57 68 chr5 76770928 76772138 -75765121 + Lx4A LINE L1 5862 7058 0 4 1170 643 197 7 13 chr5 76772144 76772298 -75764961 + GA-rich Low_complexity Low_complexity 1 153 0 4 1170 25 0 0 0 chr5 76772732 76772757 -75764502 + AT_rich Low_complexity Low_complexity 1 25 0 4 1170 195 167 0 0 chr5 76773988 76774030 -75763229 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 4 1170 820 325 26 11 chr5 76774707 76774975 -75762284 + B4A SINE B4 2 273 -19 4 1170 429 54 0 0 chr5 76775013 76775069 -75762190 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1170 289 329 74 20 chr5 76775624 76775773 -75761486 + MIRb SINE MIR 1 157 -111 4 1170 227 365 76 12 chr5 76776063 76776235 -75761024 - MIRc SINE MIR -40 228 46 4 1170 656 327 36 11 chr5 76777119 76777400 -75759859 + B4A SINE B4 1 288 -4 4 1170 1029 226 169 23 chr5 76777652 76777960 -75759299 + ORR1E LTR MaLR 3 355 -4 4 1170 365 259 53 9 chr5 76779360 76779473 -75757786 + B1F SINE Alu 17 134 -15 4 1170 273 244 0 37 chr5 76779473 76779554 -75757705 + GA-rich Low_complexity Low_complexity 4 81 0 4 1170 544 229 18 0 chr5 76779981 76780090 -75757169 + PB1D10 SINE Alu 1 111 -6 4 1170 1163 61 0 7 chr5 76780093 76780227 -75757032 + B1_Mm SINE Alu 1 134 -13 4 1170 592 44 33 0 chr5 76780227 76780318 -75756941 + (CAAAA)n Simple_repeat Simple_repeat 1 94 0 4 1170 1163 61 0 7 chr5 76780318 76780331 -75756928 + B1_Mm SINE Alu 135 147 0 4 1170 432 0 0 0 chr5 76780811 76780859 -75756400 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1170 2575 39 0 0 chr5 76781662 76781968 -75755291 - L1_Mus1 LINE L1 -620 5946 5641 4 1170 4297 80 88 2 chr5 76781972 76782572 -75754687 + L1_Mus1 LINE L1 5915 6566 -1 4 1170 213 157 0 164 chr5 76782659 76782720 -75754539 - PB1D10 SINE Alu 0 117 67 4 1170 262 331 36 71 chr5 76783281 76783561 -75753698 - L1M5 LINE L1 -302 5892 5623 4 1170 236 304 0 71 chr5 76783843 76783928 -75753331 + ID4_ SINE ID 4 82 -1 4 1170 549 0 0 0 chr5 76784158 76784219 -75753040 + (TGG)n Simple_repeat Simple_repeat 1 61 0 4 1170 333 0 0 0 chr5 76784547 76784584 -75752675 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1170 546 276 102 11 chr5 76784679 76784866 -75752393 + B4A SINE B4 11 214 -78 4 1170 387 0 0 0 chr5 76784866 76784909 -75752350 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1170 1406 101 92 12 chr5 76784962 76785202 -75752057 + Lx3A LINE L1 6718 6976 -5 4 1170 937 281 49 49 chr5 76785326 76785670 -75751589 - MER2 DNA MER2_type 0 345 2 4 1170 450 0 0 0 chr5 76786003 76786053 -75751206 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1170 238 259 19 0 chr5 76786131 76786185 -75751074 - Lx8 LINE L1 -162 7311 7257 4 1170 237 262 81 16 chr5 76786623 76786747 -75750512 - L1_Mur3 LINE L1 -3540 2340 2209 4 1170 225 94 0 0 chr5 76786747 76786779 -75750480 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1170 258 312 0 25 chr5 76787140 76787219 -75750040 - B1_Mus1 SINE Alu -52 96 20 4 1170 252 0 0 0 chr5 76787532 76787560 -75749699 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1170 191 327 82 51 chr5 76787750 76787908 -75749351 - MIRb SINE MIR -29 239 77 4 1170 477 228 26 26 chr5 76787930 76788047 -75749212 - PB1D10 SINE Alu 0 117 1 4 1170 671 274 66 5 chr5 76788658 76788856 -75748403 - B3 SINE B2 -1 215 6 4 1170 259 193 198 35 chr5 76789302 76789388 -75747871 - MLT1A1 LTR MaLR -41 367 268 4 1170 192 77 0 0 chr5 76790147 76790173 -75747086 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 4 1170 879 221 63 0 chr5 76790732 76790922 -75746337 + B3 SINE B2 9 210 -6 4 1170 569 14 14 0 chr5 76791344 76791414 -75745845 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 1170 1072 96 7 14 chr5 76791414 76791552 -75745707 - B1_Mur3 SINE Alu -9 140 2 4 1170 210 354 0 0 chr5 76791553 76791618 -75745641 - RSINE1 SINE B4 -100 65 1 4 1170 504 0 0 0 chr5 76793726 76793782 -75743477 + (GAAA)n Simple_repeat Simple_repeat 3 58 0 4 1170 451 107 13 0 chr5 76793783 76793858 -75743401 + B2_Mm2 SINE B2 1 76 -119 4 1170 578 99 0 11 chr5 76793859 76793951 -75743308 + (TTCC)n Simple_repeat Simple_repeat 2 92 0 4 1170 276 105 27 82 chr5 76793951 76794039 -75743220 - B2_Mm2 SINE B2 -1 194 114 4 1170 512 317 179 11 chr5 76794644 76795001 -75742258 - L1M5 LINE L1 -532 5708 5292 4 1170 372 167 0 0 chr5 76795266 76795338 -75741921 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 1170 362 227 94 0 chr5 76796348 76796442 -75740817 + PB1D10 SINE Alu 5 115 -34 4 1170 264 250 0 0 chr5 76796443 76796499 -75740760 + GA-rich Low_complexity Low_complexity 2 57 0 4 1170 228 86 0 0 chr5 76797241 76797276 -75739983 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1170 244 161 31 0 chr5 76797614 76797673 -75739586 + B1_Mur2 SINE Alu 80 141 -9 4 1170 263 28 28 0 chr5 76797808 76797844 -75739415 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 4 1170 1556 235 36 19 chr5 76798242 76798654 -75738605 - MTC LTR MaLR 0 421 3 4 1170 185 293 0 26 chr5 76798771 76798848 -75738411 + L2a LINE L2 3173 3247 -179 4 1170 22 35 0 0 chr5 76799093 76799122 -75738137 + AT_rich Low_complexity Low_complexity 1 29 0 4 1170 255 61 0 0 chr5 76799142 76799175 -75738084 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1170 600 137 3 9 chr5 76799368 76799479 -75737780 - MTC LTR MaLR -293 114 1 4 1170 1105 95 0 0 chr5 76799613 76799760 -75737499 - B1_Mm SINE Alu 0 147 1 4 1170 1058 96 13 6 chr5 76800220 76800378 -75736881 - B2_Mm2 SINE B2 -31 164 6 4 1170 216 0 0 0 chr5 76800495 76800519 -75736740 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1170 963 314 76 17 chr5 76800547 76801072 -75736187 - L1MB7 LINE L1 -178 6006 5451 4 1170 230 233 16 16 chr5 76801373 76801434 -75735825 - L1M4 LINE L1 -369 5805 5745 4 1170 244 287 98 0 chr5 76801663 76801785 -75735474 + L1MC5 LINE L1 7796 7929 -32 4 1170 411 286 47 75 chr5 76803499 76803711 -75733548 + MER46C DNA MER2_type 6 211 -127 4 1170 22 0 0 0 chr5 76803773 76803795 -75733464 + AT_rich Low_complexity Low_complexity 1 22 0 4 1170 912 219 44 10 chr5 76803878 76804081 -75733178 + B3 SINE B2 1 210 -6 4 1170 414 0 0 0 chr5 76804355 76804401 -75732858 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1170 301 349 18 28 chr5 76805237 76805346 -75731913 + LTR16E2 LTR ERVL 93 200 -368 4 1170 811 123 0 22 chr5 76805625 76805808 -75731451 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 4 1170 1989 116 9 15 chr5 76805983 76806307 -75730952 - ORR1A4 LTR MaLR 0 329 8 4 1170 271 315 33 22 chr5 76806876 76806967 -75730292 - B1F SINE Alu -57 92 1 4 1171 180 125 0 0 chr5 76808555 76808587 -75728672 + (GA)n Simple_repeat Simple_repeat 2 33 0 5 1171 387 105 0 0 chr5 76808804 76808861 -75728398 + (TAA)n Simple_repeat Simple_repeat 1 57 0 5 1171 21 0 0 0 chr5 76809316 76809337 -75727922 + AT_rich Low_complexity Low_complexity 1 21 0 5 1171 336 48 0 0 chr5 76810740 76810782 -75726477 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1171 198 0 0 0 chr5 76811320 76811342 -75725917 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 5 1171 1141 68 0 7 chr5 76811630 76811770 -75725489 + B1_Mus1 SINE Alu 1 140 -8 5 1171 201 39 0 0 chr5 76811770 76811796 -75725463 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1171 282 281 109 42 chr5 76811982 76812101 -75725158 + RSINE1 SINE B4 15 141 -24 5 1171 396 0 0 0 chr5 76812107 76812151 -75725108 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1171 414 0 0 0 chr5 76813134 76813180 -75724079 + (TATG)n Simple_repeat Simple_repeat 2 47 0 5 1171 313 287 69 62 chr5 76813326 76813486 -75723773 - B4A SINE B4 -82 210 50 5 1171 377 276 116 35 chr5 76813550 76813749 -75723510 + B4A SINE B4 3 217 -75 5 1171 996 149 0 0 chr5 76813854 76814028 -75723231 + (GGA)n Simple_repeat Simple_repeat 3 176 0 5 1171 422 222 0 0 chr5 76814305 76814395 -75722864 - RSINE1 SINE B4 -49 116 27 5 1171 423 0 0 0 chr5 76814661 76814708 -75722551 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5 1171 237 275 8 92 chr5 76815633 76815753 -75721506 + L3 LINE CR1 3755 3864 -625 5 1171 324 64 0 0 chr5 76816014 76816061 -75721198 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1171 377 288 75 25 chr5 76816461 76816621 -75720638 - L1MB3 LINE L1 -93 6090 5923 5 1171 348 374 68 9 chr5 76817536 76817757 -75719502 - Helitron3Na_Mam RC Helitron -1 485 252 5 1171 294 95 0 0 chr5 76818116 76818158 -75719101 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1171 477 287 42 0 chr5 76818161 76818304 -75718955 - RSINE1 SINE B4 -14 151 3 5 1171 696 265 92 9 chr5 76818442 76818659 -75718600 + MTEb LTR MaLR 4 238 -141 5 1171 709 261 33 0 chr5 76820313 76820466 -75716793 + RSINE1 SINE B4 2 159 -6 5 1171 21 57 0 0 chr5 76820466 76820501 -75716758 + AT_rich Low_complexity Low_complexity 1 35 0 5 1171 225 65 0 0 chr5 76820593 76820624 -75716635 + (TC)n Simple_repeat Simple_repeat 2 32 0 5 1171 216 97 0 0 chr5 76820624 76820655 -75716604 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1171 180 0 0 0 chr5 76820909 76820929 -75716330 + (TC)n Simple_repeat Simple_repeat 1 20 0 5 1171 439 317 8 0 chr5 76820941 76821064 -75716195 - B1F1 SINE Alu -16 133 10 5 1171 252 213 0 0 chr5 76821470 76821517 -75715742 + ID4_ SINE ID 1 47 -36 5 1171 302 265 0 8 chr5 76821528 76821646 -75715613 + G-rich Low_complexity Low_complexity 2 118 0 5 1171 233 267 65 26 chr5 76823141 76823218 -75714041 - ID4 SINE ID -3 80 1 5 1171 529 265 101 32 chr5 76823936 76824154 -75713105 + Lx9 LINE L1 7135 7367 -277 5 1171 271 276 57 11 chr5 76824234 76824322 -75712937 + PB1D7 SINE Alu 22 113 -7 5 1171 530 279 90 83 chr5 76825805 76826094 -75711165 + B4A SINE B4 2 292 0 5 1171 258 259 4 4 chr5 76826396 76826489 -75710770 - ID4 SINE ID -52 100 8 5 1171 485 324 111 14 chr5 76826650 76826918 -75710341 + B4A SINE B4 1 288 -4 5 1171 722 281 0 0 chr5 76826978 76827124 -75710135 - RSINE1 SINE B4 -17 148 3 5 1171 275 369 78 14 chr5 76827209 76827426 -75709833 + Arthur1 DNA Tip100 128 358 -3589 5 1171 345 225 0 0 chr5 76827847 76827936 -75709323 + (TA)n Simple_repeat Simple_repeat 2 90 0 5 1171 447 19 0 0 chr5 76827968 76828020 -75709239 + (GAAA)n Simple_repeat Simple_repeat 4 55 0 5 1171 2242 137 55 11 chr5 76828671 76829033 -75708226 - ORR1C1 LTR MaLR 0 378 1 5 1171 1328 299 34 40 chr5 76829077 76829760 -75707499 - L1MB7 LINE L1 -19 6165 5487 5 1171 2116 89 19 3 chr5 76829777 76830091 -75707168 - MTB_Mm LTR MaLR 0 407 89 5 1171 490 303 97 0 chr5 76830189 76830344 -75706915 + MTD LTR MaLR 17 186 -233 5 1171 547 269 60 0 chr5 76832013 76832147 -75705112 - B1F2 SINE Alu -7 142 1 5 1171 1561 62 0 0 chr5 76832247 76832439 -75704820 - B2_Mm1a SINE B2 0 193 2 5 1171 710 113 0 9 chr5 76832531 76832647 -75704612 + (GGGA)n Simple_repeat Simple_repeat 4 118 0 5 1171 257 145 0 16 chr5 76832958 76833021 -75704238 + T-rich Low_complexity Low_complexity 2 63 0 5 1171 28 61 0 0 chr5 76833598 76833647 -75703612 + AT_rich Low_complexity Low_complexity 1 49 0 5 1171 397 293 110 53 chr5 76833813 76834022 -75703237 + MER2 DNA MER2_type 124 344 -1 5 1171 186 43 0 0 chr5 76834829 76834852 -75702407 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 1171 865 89 0 0 chr5 76834876 76835000 -75702259 - B2_Mm2 SINE B2 -71 124 1 5 1171 725 243 28 0 chr5 76835023 76835204 -75702055 - B3 SINE B2 -27 189 4 5 1171 208 70 23 23 chr5 76836235 76836279 -75700980 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5 1171 1159 212 69 50 chr5 76836620 76836962 -75700297 + MT2A LTR ERVL 6 483 -118 5 1171 28 0 0 0 chr5 76836974 76837002 -75700257 + AT_rich Low_complexity Low_complexity 1 28 0 5 1171 437 175 2 0 chr5 76837009 76837091 -75700168 - MT2A LTR ERVL -47 554 391 5 1171 546 277 152 0 chr5 76837370 76837626 -75699633 - MER44A DNA MER2_type -43 296 2 5 1171 306 0 0 0 chr5 76838216 76838250 -75699009 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 5 1171 985 230 63 20 chr5 76838629 76838882 -75698377 - MTD LTR MaLR 0 419 156 5 1171 1458 162 142 6 chr5 76839075 76839392 -75697867 + RLTR11A LTR ERVK 1 360 -168 5 1171 186 43 0 0 chr5 76839565 76839588 -75697671 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1171 2100 89 15 57 chr5 76839993 76840326 -75696933 - ORR1A2 LTR MaLR -8 319 1 5 1171 828 258 182 33 chr5 76840916 76841128 -75696131 - MTE2a LTR MaLR -1 378 118 5 1171 3081 48 20 42 chr5 76841128 76841537 -75695722 - MTB LTR MaLR 0 400 1 5 1171 828 258 182 33 chr5 76841537 76841653 -75695606 - MTE2a LTR MaLR -262 117 1 5 1171 294 345 41 14 chr5 76841851 76841998 -75695261 - MIRb SINE MIR -81 187 37 5 1171 700 283 73 145 chr5 76842341 76842713 -75694546 + MTEa LTR MaLR 1 345 -34 5 1171 274 223 71 50 chr5 76843116 76843215 -75694044 + L1MC LINE L1 3276 3376 -2770 5 1171 627 192 11 6 chr5 76843527 76843705 -75693554 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1171 526 156 34 11 chr5 76843720 76843895 -75693364 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1171 269 160 60 0 chr5 76843917 76843967 -75693292 + L1MC LINE L1 3518 3570 -2576 5 1171 785 297 45 115 chr5 76844003 76844334 -75692925 + MER2 DNA MER2_type 9 316 -29 5 1171 854 309 50 6 chr5 76844396 76844734 -75692525 + MLT1A0 LTR MaLR 1 353 -12 5 1171 1213 238 65 118 chr5 76844739 76845116 -75692143 + L1MC LINE L1 3685 4021 -2125 5 1171 968 143 33 39 chr5 76845116 76845298 -75691961 - B2_Mm2 SINE B2 -14 181 1 5 1171 1213 238 65 118 chr5 76845298 76845488 -75691771 + L1MC LINE L1 4022 4222 -1924 5 1171 746 226 47 21 chr5 76845986 76846221 -75691038 + L1MC LINE L1 4273 4513 -1633 5 1171 289 364 50 13 chr5 76847139 76847378 -75689881 - MER74A LTR ERVL -138 420 173 5 1171 202 320 53 13 chr5 76848787 76848863 -75688396 - L2a LINE L2 0 3426 3348 5 1171 689 226 6 6 chr5 76849040 76849196 -75688063 - MTD LTR MaLR -263 156 1 5 1171 201 132 0 0 chr5 76849671 76849709 -75687550 + (CAA)n Simple_repeat Simple_repeat 3 40 0 5 1171 37 19 0 18 chr5 76851287 76851324 -75685935 + AT_rich Low_complexity Low_complexity 1 37 0 5 1171 981 75 68 0 chr5 76851324 76851457 -75685802 - B1_Mus1 SINE Alu -5 143 2 5 1171 37 19 0 18 chr5 76851457 76851474 -75685785 + AT_rich Low_complexity Low_complexity 1 17 0 5 1171 4461 102 88 21 chr5 76851568 76852326 -75684933 - RMER17D2 LTR ERVK 0 809 1 5 1171 389 95 0 16 chr5 76852445 76852509 -75684750 + (TC)n Simple_repeat Simple_repeat 1 63 0 5 1171 981 1 0 151 chr5 76855491 76856283 -75680976 + (TAGA)n Simple_repeat Simple_repeat 1 672 0 5 1171 317 209 42 25 chr5 76856347 76856465 -75680794 + (TAGA)n Simple_repeat Simple_repeat 2 121 0 5 1171 691 271 67 33 chr5 76856714 76856924 -75680335 - B4 SINE B4 -75 217 1 5 1171 633 268 145 57 chr5 76856958 76857278 -75679981 + MTEa LTR MaLR 1 340 -30 5 1171 628 211 0 58 chr5 76857526 76857682 -75679577 + B1_Mus1 SINE Alu 1 147 -1 5 1171 275 278 22 0 chr5 76857904 76857994 -75679265 - MLT1A1 LTR MaLR -24 384 293 5 1171 270 0 0 0 chr5 76858366 76858396 -75678863 + (GAA)n Simple_repeat Simple_repeat 2 31 0 5 1171 1153 61 0 45 chr5 76859739 76859758 -75677501 - B1_Mus2 SINE Alu 0 147 135 5 1171 219 36 0 0 chr5 76859758 76859786 -75677473 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 1171 1153 61 0 45 chr5 76859786 76859920 -75677339 - B1_Mus2 SINE Alu -13 134 1 5 1171 640 226 96 67 chr5 76860977 76861186 -75676073 - B3 SINE B2 0 216 2 5 1171 345 371 54 31 chr5 76861452 76861803 -75675456 - ORR1E LTR MaLR 0 359 1 5 1171 369 0 0 0 chr5 76862096 76862137 -75675122 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1171 3595 129 24 19 chr5 76862137 76862776 -75674483 - RMER6A LTR ERVK -6 750 109 5 1171 803 55 9 0 chr5 76862796 76862905 -75674354 + (TC)n Simple_repeat Simple_repeat 1 110 0 5 1171 225 83 0 0 chr5 76862916 76862952 -75674307 + (GA)n Simple_repeat Simple_repeat 1 36 0 5 1171 303 312 80 49 chr5 76862956 76863280 -75673979 - Lx8 LINE L1 -4 7469 7136 5 1171 817 238 38 0 chr5 76863445 76863685 -75673574 + L1MB3 LINE L1 5859 6107 -76 5 1171 3012 30 0 88 chr5 76863733 76864133 -75673126 - RLTR10B2 LTR ERVK 0 365 1 5 1171 300 276 30 12 chr5 76864535 76864700 -75672559 + (CAGA)n Simple_repeat Simple_repeat 3 170 0 5 1171 225 0 0 0 chr5 76864876 76864901 -75672358 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 6 1171 1333 51 11 0 chr5 76864901 76865079 -75672180 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1171 198 0 0 0 chr5 76865251 76865273 -75671986 + (ATG)n Simple_repeat Simple_repeat 2 23 0 6 1171 605 164 72 79 chr5 76865273 76865412 -75671847 - B1_Mus1 SINE Alu -3 145 8 6 1171 222 327 136 0 chr5 76865468 76865578 -75671681 - MIR SINE MIR -137 125 1 6 1171 1200 54 0 0 chr5 76867317 76867464 -75669795 + B1_Mus2 SINE Alu 1 147 0 6 1171 215 355 71 57 chr5 76867544 76867756 -75669503 - MIR SINE MIR -30 232 18 6 1171 311 284 100 62 chr5 76867985 76868225 -75669034 - Charlie18a DNA MER1_type -93 249 1 6 1171 515 246 32 24 chr5 76868539 76868664 -75668595 + B1_Mur1 SINE Alu 3 128 -21 6 1171 25 31 0 0 chr5 76868910 76868942 -75668317 + AT_rich Low_complexity Low_complexity 1 32 0 6 1171 3596 13 2 0 chr5 76869034 76869429 -75667830 + MTA_Mm LTR MaLR 1 396 0 6 1171 302 45 23 0 chr5 76870167 76870211 -75667048 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 6 1171 2302 201 105 27 chr5 76870891 76871429 -75665830 - Lx7 LINE L1 0 7696 7107 6 1171 2278 123 3 0 chr5 76871429 76871754 -75665505 + ORR1A3 LTR MaLR 1 326 0 6 1171 2302 201 105 27 chr5 76871754 76871817 -75665442 - Lx7 LINE L1 -590 7106 7048 6 1171 3423 152 94 142 chr5 76871817 76872757 -75664502 + RMER19B LTR ERVK 1 895 -7 6 1171 3062 199 92 14 chr5 76872772 76873585 -75663674 - Lx7 LINE L1 -426 7034 6108 6 1171 24 32 0 0 chr5 76873791 76873822 -75663437 + AT_rich Low_complexity Low_complexity 1 31 0 6 1171 700 280 9 53 chr5 76873825 76874051 -75663208 + B3 SINE B2 1 216 0 6 1171 1125 96 0 0 chr5 76874078 76874224 -75663035 + B1_Mus1 SINE Alu 2 147 -1 6 1171 3628 80 8 8 chr5 76874287 76874780 -75662479 + L1Md_F2 LINE L1 6090 6582 0 6 1171 347 105 0 17 chr5 76875279 76875337 -75661922 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1171 210 71 0 0 chr5 76875562 76875590 -75661669 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1171 207 0 0 0 chr5 76875941 76875964 -75661295 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 6 1171 189 0 0 0 chr5 76875965 76875986 -75661273 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1171 3236 67 0 12 chr5 76876068 76876491 -75660768 - L1Md_F2 LINE L1 -13 6569 6152 6 1171 216 0 0 0 chr5 76876622 76876646 -75660613 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 1171 1554 75 9 0 chr5 76877514 76877728 -75659531 - Lx2 LINE L1 -8 6989 6774 6 1171 508 85 85 0 chr5 76877728 76877810 -75659449 - Lx2 LINE L1 -355 6642 6554 6 1171 651 286 39 55 chr5 76877793 76878092 -75659167 - Lx7 LINE L1 -1568 5905 5613 6 1171 1984 122 82 7 chr5 76879811 76880117 -75657142 + ORR1A4 LTR MaLR 1 329 0 6 1171 402 21 0 0 chr5 76881000 76881047 -75656212 + (TTGG)n Simple_repeat Simple_repeat 2 48 0 6 1171 515 308 0 40 chr5 76881059 76881208 -75656051 - B1F1 SINE Alu -1 148 6 6 1171 215 359 11 11 chr5 76881128 76881221 -75656038 - B4A SINE B4 -122 170 78 6 1171 1234 101 22 0 chr5 76881309 76881488 -75655771 - B2_Mm1t SINE B2 -10 183 1 6 1171 222 261 0 34 chr5 76881590 76881709 -75655550 + GA-rich Low_complexity Low_complexity 3 117 0 6 1171 1271 299 45 0 chr5 76882048 76882403 -75654856 - MTE2b LTR MaLR -8 371 1 6 1171 483 357 114 3 chr5 76882721 76883027 -75654232 + L1M2c LINE L1 98 437 -6731 6 1171 380 333 118 4 chr5 76883714 76883943 -75653316 + L1M2c LINE L1 1159 1413 -5755 6 1171 315 0 0 0 chr5 76884026 76884061 -75653198 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1171 195 100 0 0 chr5 76884063 76884093 -75653166 + (GGGGA)n Simple_repeat Simple_repeat 2 31 0 6 1171 661 257 86 27 chr5 76884135 76884391 -75652868 + L1M2c LINE L1 1939 2209 -4959 6 1171 398 245 75 9 chr5 76884400 76884507 -75652752 + B1F1 SINE Alu 1 114 -35 6 1171 535 265 102 90 chr5 76884529 76884760 -75652499 + B4A SINE B4 45 279 -13 6 1171 273 29 0 0 chr5 76884760 76884794 -75652465 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1171 535 265 102 90 chr5 76884794 76884807 -75652452 + B4A SINE B4 280 292 0 6 1171 329 302 129 42 chr5 76885085 76885348 -75651911 + L1M2c LINE L1 3175 3460 -3704 6 1171 374 287 160 12 chr5 76885353 76885603 -75651656 + L1M2c LINE L1 4507 4793 -2368 6 1171 226 381 27 27 chr5 76885650 76885836 -75651423 + L1MC3 LINE L1 6658 6843 -1152 6 1171 299 234 12 157 chr5 76885886 76886058 -75651201 + L1MC3 LINE L1 6909 7075 -920 6 1171 196 115 37 37 chr5 76886062 76886116 -75651143 + G-rich Low_complexity Low_complexity 4 57 0 6 1171 545 156 0 0 chr5 76887078 76887168 -75650091 - B1_Mm SINE Alu -56 91 2 6 1171 233 335 133 41 chr5 76887870 76888141 -75649118 - MER44A DNA MER2_type -30 309 14 6 1171 683 175 32 0 chr5 76888157 76888283 -75648976 + B3A SINE B2 12 141 -57 6 1171 234 0 0 0 chr5 76888313 76888339 -75648920 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 6 1171 428 331 159 17 chr5 76888430 76888668 -75648591 + B4A SINE B4 9 280 -12 6 1171 287 295 42 0 chr5 76888796 76888891 -75648368 - B1F SINE Alu -13 136 38 6 1171 272 229 0 0 chr5 76888919 76888980 -75648279 + MER33 DNA MER1_type 259 319 -5 6 1171 951 232 129 38 chr5 76889345 76889710 -75647549 - MTD LTR MaLR 0 419 6 6 1171 363 23 0 0 chr5 76890420 76890464 -75646795 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1171 537 297 7 0 chr5 76890465 76890613 -75646646 - B3A SINE B2 -49 149 1 6 1171 373 345 166 31 chr5 76890891 76891247 -75646012 - LTR16A1 LTR ERVL -2 454 51 6 1171 481 200 9 19 chr5 76891756 76891863 -75645396 - MTD LTR MaLR -272 147 42 6 1171 270 287 22 22 chr5 76892106 76892195 -75645064 - ORR1E LTR MaLR -224 135 47 6 1171 763 163 166 16 chr5 76893583 76893770 -75643489 + URR1B DNA MER1_type 1 215 -10 6 1171 260 331 29 22 chr5 76893856 76893995 -75643264 + MIRb SINE MIR 21 160 -108 6 1171 436 241 143 41 chr5 76894341 76894488 -75642771 + RSINE1 SINE B4 4 165 0 6 1171 372 237 135 10 chr5 76894962 76895119 -75642140 - L1MA7 LINE L1 0 6300 6132 6 1171 1369 82 260 72 chr5 76895384 76895661 -75641598 + ORR1A4 LTR MaLR 1 329 0 6 1171 329 282 99 91 chr5 76895711 76895953 -75641306 + HAL1 LINE L1 441 684 -1823 6 1171 202 281 0 17 chr5 76896244 76896302 -75640957 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1171 443 223 41 16 chr5 76896361 76896484 -75640775 - Lx9 LINE L1 -1 7643 7518 6 1171 321 70 0 0 chr5 76896487 76896530 -75640729 - HAL1-3A_ME LINE L1 -840 2018 1976 6 1171 846 195 0 0 chr5 76896530 76897230 -75640029 + (TG)n Simple_repeat Simple_repeat 1 700 0 6 1171 487 301 7 7 chr5 76897260 76897407 -75639852 - RSINE1 SINE B4 -17 148 2 6 1171 272 247 39 0 chr5 76897571 76897648 -75639611 + MTE2b LTR MaLR 300 379 0 6 1171 1273 282 147 7 chr5 76897773 76898320 -75638939 + L1MB3 LINE L1 5465 6103 -80 6 1171 277 62 0 40 chr5 76898445 76898495 -75638764 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1171 361 236 195 0 chr5 76898503 76898626 -75638633 - B1_Mur1 SINE Alu -1 148 2 6 1171 22 35 0 0 chr5 76899218 76899247 -75638012 + AT_rich Low_complexity Low_complexity 1 29 0 6 1171 7223 52 2 1 chr5 76899676 76900567 -75636692 + L1Md_F2 LINE L1 5684 6575 -7 6 1171 513 251 64 64 chr5 76900922 76901156 -75636103 - RMER2 LTR ERV1 0 567 334 6 1171 210 172 17 33 chr5 76901358 76901418 -75635841 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 6 1171 1102 266 28 68 chr5 76902800 76903195 -75634064 - MTE2a LTR MaLR 0 379 1 6 1171 227 280 71 14 chr5 76903291 76903399 -75633860 - L2c LINE L2 -4 3371 3252 6 1171 219 160 60 0 chr5 76903515 76903565 -75633694 + (CAGAGA)n Simple_repeat Simple_repeat 1 53 0 6 1171 268 203 145 0 chr5 76903642 76903711 -75633548 + PB1 SINE Alu 49 127 0 6 1171 254 242 81 0 chr5 76903727 76903789 -75633470 + ID SINE ID 2 68 -156 6 1171 817 198 215 42 chr5 76905189 76905542 -75631717 - RMER10A LTR ERVL 0 442 29 6 1171 741 256 11 11 chr5 76905654 76905832 -75631427 + B3A SINE B2 3 180 -18 6 1171 495 0 0 0 chr5 76905869 76905924 -75631335 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1171 306 0 0 0 chr5 76906595 76906629 -75630630 + (TTA)n Simple_repeat Simple_repeat 2 35 0 6 1171 180 0 0 0 chr5 76906631 76906651 -75630608 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 6 1171 230 56 0 27 chr5 76907165 76907202 -75630057 + (CACCC)n Simple_repeat Simple_repeat 3 38 0 6 1171 894 290 30 26 chr5 76907213 76907577 -75629682 - MTE2a LTR MaLR -44 375 1 6 1171 2165 117 263 25 chr5 76907780 76908183 -75629076 + RLTR19 LTR ERVK 1 499 0 6 1171 2236 134 0 3 chr5 76908955 76909283 -75627976 + ORR1A2 LTR MaLR 1 327 0 6 1171 511 235 0 0 chr5 76909330 76909432 -75627827 + PB1D7 SINE Alu 18 119 -1 6 1171 380 224 9 117 chr5 76909434 76909545 -75627714 + RSINE1 SINE B4 3 101 -64 6 1171 249 113 18 70 chr5 76909562 76909619 -75627640 + A-rich Low_complexity Low_complexity 1 54 0 6 1171 263 28 0 27 chr5 76910044 76910081 -75627178 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 6 1171 365 44 4 0 chr5 76910081 76910138 -75627121 - B1_Mm SINE Alu -13 136 79 6 1171 229 313 0 24 chr5 76910238 76910323 -75626936 + MIRm SINE MIR 194 276 0 6 1171 638 280 114 27 chr5 76910512 76910804 -75626455 - MLT1A1 LTR MaLR -14 394 77 6 1171 245 186 140 75 chr5 76910804 76910897 -75626362 - RLTR42 LTR ERVK 0 239 141 6 1171 402 21 0 0 chr5 76911034 76911081 -75626178 + (CATA)n Simple_repeat Simple_repeat 2 48 0 6 1171 482 214 28 28 chr5 76911085 76911100 -75626159 + ID_B1 SINE B4 79 222 -2 6 1171 780 101 62 0 chr5 76911100 76911229 -75626030 + B1_Mur3 SINE Alu 12 148 -1 6 1171 437 269 96 7 chr5 76911529 76911675 -75625584 - B3 SINE B2 -1 215 57 6 1171 659 176 0 0 chr5 76911897 76912016 -75625243 + ORR1D1 LTR MaLR 1 119 -255 7 1171 579 206 0 0 chr5 76912066 76912246 -75625013 + CT-rich Low_complexity Low_complexity 1 180 0 7 1171 1039 187 15 20 chr5 76912246 76912448 -75624811 + ORR1D1 LTR MaLR 166 366 -8 7 1171 517 14 0 28 chr5 76913238 76913310 -75623949 + (CAG)n Simple_repeat Simple_repeat 2 71 0 7 1171 30 0 0 0 chr5 76914089 76914119 -75623140 + AT_rich Low_complexity Low_complexity 1 30 0 7 1171 29 70 0 0 chr5 76914750 76914807 -75622452 + AT_rich Low_complexity Low_complexity 1 57 0 7 1171 287 184 34 11 chr5 76915094 76915182 -75622077 + (TA)n Simple_repeat Simple_repeat 2 91 0 7 1171 4811 126 33 18 chr5 76915882 76916679 -75620580 - RMER17D2 LTR ERVK 0 809 1 7 1171 1019 268 108 14 chr5 76916977 76917337 -75619922 + Lx8 LINE L1 7080 7473 0 7 1171 21 36 0 0 chr5 76917452 76917480 -75619779 + AT_rich Low_complexity Low_complexity 1 28 0 7 1171 4133 168 23 31 chr5 76917782 76918530 -75618729 - Lx5 LINE L1 -3 7047 6306 7 1171 279 252 48 19 chr5 76918554 76918659 -75618600 - Lx7 LINE L1 -4 7692 7585 7 1171 869 284 102 13 chr5 76918727 76919041 -75618218 - Lx7 LINE L1 -282 7414 7073 7 1171 755 126 79 0 chr5 76919533 76919660 -75617599 - B1_Mur4 SINE Alu -7 143 7 7 1171 228 135 0 0 chr5 76920369 76920406 -75616853 + (TCTCCC)n Simple_repeat Simple_repeat 1 37 0 7 1171 662 266 191 5 chr5 76920638 76920853 -75616406 + B4 SINE B4 3 257 -35 7 1171 282 116 0 0 chr5 76920853 76920896 -75616363 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1171 295 291 92 17 chr5 76920896 76920923 -75616336 + B4A SINE B4 265 291 -1 7 1171 641 280 46 23 chr5 76922786 76923002 -75614257 + Lx8 LINE L1 6886 7106 -367 7 1171 252 0 0 0 chr5 76923005 76923033 -75614226 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1171 303 28 0 0 chr5 76923035 76923071 -75614188 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 1171 31 0 0 0 chr5 76923223 76923254 -75614005 + AT_rich Low_complexity Low_complexity 1 31 0 7 1171 21 0 0 0 chr5 76923259 76923280 -75613979 + AT_rich Low_complexity Low_complexity 1 21 0 7 1171 5394 39 0 9 chr5 76923327 76923976 -75613283 + L1Md_F2 LINE L1 5940 6582 0 7 1171 203 307 80 0 chr5 76924485 76924560 -75612699 + MIRm SINE MIR 196 276 0 7 1171 357 143 40 54 chr5 76924773 76924843 -75612416 - URR1B DNA MER1_type 0 225 157 7 1171 1921 134 87 34 chr5 76924843 76925106 -75612153 + MTB_Mm LTR MaLR 1 288 -119 7 1171 2582 62 19 0 chr5 76925106 76925427 -75611832 + ORR1A2 LTR MaLR 1 327 0 7 1171 1921 134 87 34 chr5 76925427 76925542 -75611717 + MTB_Mm LTR MaLR 289 399 -8 7 1171 487 159 286 0 chr5 76925544 76925670 -75611589 - URR1B DNA MER1_type -62 163 2 7 1171 3535 20 2 0 chr5 76927320 76927715 -75609544 + MTA_Mm LTR MaLR 1 396 0 7 1171 499 249 158 120 chr5 76927901 76928293 -75608966 - MLT1A1 LTR MaLR -1 407 1 7 1171 1390 92 16 0 chr5 76928599 76928784 -75608475 - B2_Mm2 SINE B2 -6 189 2 7 1171 211 304 25 12 chr5 76930831 76930911 -75606348 - MIRc SINE MIR -128 140 60 7 1171 199 283 45 36 chr5 76931783 76931893 -75605366 - L3 LINE CR1 -1575 2914 2804 7 1171 1350 94 0 0 chr5 76932392 76932658 -75604601 + (GAA)n Simple_repeat Simple_repeat 1 266 0 7 1171 454 247 16 16 chr5 76932983 76933115 -75604144 - B1F SINE Alu -8 141 2 7 1171 36301 44 0 3 chr5 76933144 76938408 -75598851 + L1Md_T LINE L1 248 5589 -297 7 146 8564 32 0 0 chr5 76938408 76939423 -75597836 + L1Md_T LINE L1 5590 6585 0 7 1172 408 215 13 0 chr5 76939497 76939576 -75597683 - B4A SINE B4 -212 80 1 7 1172 338 30 14 70 chr5 76939611 76939682 -75597577 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 7 1172 8013 207 54 54 chr5 76940599 76943680 -75593579 - Lx7 LINE L1 0 7696 4625 7 1172 297 0 0 0 chr5 76943680 76943713 -75593546 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1172 6827 154 32 52 chr5 76943713 76944038 -75593221 - Lx7 LINE L1 -1256 4624 4298 7 1172 1523 130 58 0 chr5 76944036 76944297 -75592962 - Lx7 LINE L1 -6749 979 704 7 1172 2133 187 76 7 chr5 76944297 76944743 -75592516 + RLTR18B LTR ERVK 1 477 -35 7 1172 1718 144 126 41 chr5 76944752 76945166 -75592093 - Lx7 LINE L1 -7042 686 238 7 1172 1010 298 96 34 chr5 76945879 76946837 -75590422 + L1MB4 LINE L1 4520 5553 -625 7 1172 3280 35 56 0 chr5 76947384 76947778 -75589481 + L1_Mm LINE L1 5468 5883 0 7 1172 1143 251 76 51 chr5 76947852 76948301 -75588958 + L1MB4 LINE L1 5702 6161 -19 7 1172 30 27 0 0 chr5 76948502 76948539 -75588720 + AT_rich Low_complexity Low_complexity 1 37 0 7 1172 263 214 14 0 chr5 76948542 76948612 -75588647 + (TA)n Simple_repeat Simple_repeat 2 72 0 7 1172 249 241 96 72 chr5 76948658 76948783 -75588476 + L1ME1 LINE L1 5277 5404 -2478 7 1172 27 29 0 0 chr5 76949176 76949210 -75588049 + AT_rich Low_complexity Low_complexity 1 34 0 7 1172 26 64 0 0 chr5 76949287 76949334 -75587925 + AT_rich Low_complexity Low_complexity 1 47 0 7 1172 648 125 15 23 chr5 76949334 76949465 -75587794 - Lx4A LINE L1 -2 7056 6927 7 1172 295 302 129 70 chr5 76949465 76949554 -75587705 - MER89 LTR ERV1 -217 342 250 7 1172 1197 62 0 0 chr5 76949554 76949700 -75587559 + B1_Mus2 SINE Alu 2 147 0 7 1172 295 302 129 70 chr5 76949700 76949912 -75587347 - MER89 LTR ERV1 -310 249 23 7 1172 280 246 33 0 chr5 76949925 76949986 -75587273 + L1ME1 LINE L1 6055 6117 -62 7 1172 874 178 119 209 chr5 76949994 76950178 -75587081 + ORR1D1 LTR MaLR 1 156 -218 7 1172 204 67 0 0 chr5 76950178 76950208 -75587051 + (TCTCTG)n Simple_repeat Simple_repeat 1 30 0 7 1172 874 178 119 209 chr5 76950208 76950434 -75586825 + ORR1D1 LTR MaLR 157 374 0 7 1172 232 240 92 13 chr5 76951611 76951687 -75585572 + L1MB2 LINE L1 5964 6045 -126 7 1172 567 177 9 17 chr5 76951749 76951864 -75585395 - PB1D7 SINE Alu 0 120 7 7 1172 433 222 167 0 chr5 76951920 76952046 -75585213 + B1_Mur1 SINE Alu 2 148 -1 7 1172 1049 44 0 0 chr5 76952100 76952235 -75585024 - B1_Mus1 SINE Alu 0 148 14 7 1172 197 246 115 0 chr5 76952454 76952515 -75584744 - MIRm SINE MIR -104 172 105 7 1172 24 53 0 0 chr5 76952653 76952691 -75584568 + AT_rich Low_complexity Low_complexity 1 38 0 7 1172 257 304 148 6 chr5 76953504 76953673 -75583586 - L2 LINE L2 -745 2674 2482 7 1172 2925 119 71 12 chr5 76954201 76954696 -75582563 + RLTR28 LTR ERVL 1 524 0 7 1172 692 290 27 5 chr5 76954964 76955151 -75582108 - MER20 DNA MER1_type -26 193 3 7 1172 637 188 0 0 chr5 76956315 76956432 -75580827 - ORR1C1 LTR MaLR -8 370 254 7 1172 182 62 0 30 chr5 76956498 76956531 -75580728 + (TATAA)n Simple_repeat Simple_repeat 5 36 0 7 1172 186 295 0 32 chr5 76956549 76956612 -75580647 - L2 LINE L2 -991 2428 2368 7 1172 1172 62 7 0 chr5 76956987 76957133 -75580126 + B1_Mus1 SINE Alu 2 148 0 7 1172 682 213 34 45 chr5 76957160 76957337 -75579922 + Lx5 LINE L1 6873 7047 -3 7 1172 23 0 0 0 chr5 76957467 76957490 -75579769 + AT_rich Low_complexity Low_complexity 1 23 0 7 1172 1013 167 82 10 chr5 76957971 76958177 -75579082 - URR1A DNA MER1_type -5 221 1 7 1172 205 360 101 0 chr5 76960114 76960203 -75577056 - L2b LINE L2 -15 3360 3263 7 1172 3005 60 39 0 chr5 76960490 76960875 -75576384 + MTB LTR MaLR 1 400 0 7 1172 570 168 101 7 chr5 76960878 76961038 -75576221 + MTC LTR MaLR 2 167 -240 7 1172 364 294 106 21 chr5 76961038 76961226 -75576033 - L1M5 LINE L1 -587 5592 5389 7 1172 509 300 142 54 chr5 76961236 76961497 -75575762 - B4 SINE B4 -7 285 2 7 1172 243 0 0 0 chr5 76961581 76961608 -75575651 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1172 237 272 28 4 chr5 76962318 76962397 -75574862 - PB1D9 SINE Alu 0 120 43 7 1172 364 256 92 44 chr5 76962653 76962851 -75574408 - L1M5 LINE L1 -585 5577 5366 7 1172 411 294 74 14 chr5 76963201 76963418 -75573841 - L1M5 LINE L1 -1443 4703 4474 7 1172 848 124 129 6 chr5 76963780 76963950 -75573309 - URR1B DNA MER1_type 0 225 35 7 1172 26 74 0 0 chr5 76964969 76965023 -75572236 + AT_rich Low_complexity Low_complexity 1 54 0 7 1172 1369 226 75 23 chr5 76965646 76966044 -75571215 + MTD LTR MaLR 1 419 0 7 1172 357 220 39 96 chr5 76967084 76967240 -75570019 + B1F1 SINE Alu 3 149 0 7 1172 455 222 37 0 chr5 76967949 76968057 -75569202 - B1F SINE Alu -3 146 35 7 1172 513 187 100 43 chr5 76968111 76968251 -75569008 - RSINE1 SINE B4 -17 148 1 7 1172 198 103 0 0 chr5 76970539 76970568 -75566691 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1172 758 246 99 8 chr5 76971422 76971684 -75565575 + B4A SINE B4 1 286 -6 7 1172 303 179 0 0 chr5 76971700 76971767 -75565492 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 1172 252 295 75 19 chr5 76973260 76973367 -75563892 - PB1D9 SINE Alu -1 119 7 7 1172 394 277 37 12 chr5 76973507 76973668 -75563591 - RSINE1 SINE B4 0 165 1 7 1172 266 254 16 0 chr5 76973789 76973852 -75563407 - MER5A DNA MER1_type -88 101 38 7 1172 251 250 0 0 chr5 76973974 76974026 -75563233 + ID4_ SINE ID 8 59 -24 7 1172 346 244 65 58 chr5 76974068 76974207 -75563052 + RSINE1 SINE B4 2 141 -24 7 1172 470 208 111 19 chr5 76976197 76976305 -75560954 + PB1D9 SINE Alu 3 120 0 7 1172 22 35 0 0 chr5 76976632 76976661 -75560598 + AT_rich Low_complexity Low_complexity 1 29 0 7 1172 29 28 0 0 chr5 76977892 76977928 -75559331 + AT_rich Low_complexity Low_complexity 1 36 0 7 1172 725 294 33 75 chr5 76978895 76979116 -75558143 - B4A SINE B4 0 292 77 7 1172 746 263 20 15 chr5 76979116 76979313 -75557946 - B3A SINE B2 0 198 1 7 1172 725 294 33 75 chr5 76979313 76979396 -75557863 - B4A SINE B4 -216 76 1 7 1172 2246 220 65 0 chr5 76979591 76980082 -75557177 - Lx7 LINE L1 -796 6900 6378 7 1172 424 295 8 8 chr5 76980157 76980280 -75556979 + RSINE1 SINE B4 3 125 -40 7 1172 24 0 0 0 chr5 76980577 76980601 -75556658 + AT_rich Low_complexity Low_complexity 1 24 0 7 1172 180 0 0 0 chr5 76980807 76980827 -75556432 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 7 1172 752 66 47 29 chr5 76980970 76981142 -75556117 + (TTCTC)n Simple_repeat Simple_repeat 5 179 0 7 1172 261 0 0 0 chr5 76981150 76981179 -75556080 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1172 320 250 0 0 chr5 76981724 76981792 -75555467 + L1_Mur2 LINE L1 4464 4531 -1346 7 1172 1664 26 0 5 chr5 76982127 76982320 -75554939 + B2_Mm1a SINE B2 2 193 0 7 1172 406 228 235 0 chr5 76987175 76987311 -75549948 + B3A SINE B2 1 168 -30 8 1172 1193 62 0 0 chr5 76989115 76989261 -75547998 - B1_Mus2 SINE Alu -1 146 1 8 1172 1039 245 94 123 chr5 76989554 76989927 -75547332 - MTE2b LTR MaLR -17 362 1 8 1172 591 200 24 0 chr5 76990905 76991030 -75546229 + B1_Mur3 SINE Alu 2 129 -20 8 1172 1178 62 6 0 chr5 76991310 76991472 -75545787 + B2_Mm2 SINE B2 2 164 -31 8 1172 952 65 19 19 chr5 76991474 76991630 -75545629 + (GGAA)n Simple_repeat Simple_repeat 1 156 0 8 1172 555 16 0 0 chr5 76991633 76991697 -75545562 + (GA)n Simple_repeat Simple_repeat 1 64 0 8 1172 277 254 34 47 chr5 76992579 76992757 -75544502 - RLTR11A2 LTR ERVK -34 494 257 8 1172 663 259 62 75 chr5 76992732 76993100 -75544159 - RLTR11A2 LTR ERVK -123 330 1 8 1172 3735 79 4 6 chr5 76993362 76993861 -75543398 + L1_Mur2 LINE L1 4120 4617 -1260 8 1172 696 127 52 84 chr5 76994130 76994285 -75542974 + L1_Mur2 LINE L1 4603 4752 -1125 8 1172 265 264 81 0 chr5 76994511 76994598 -75542661 + B3A SINE B2 68 161 -37 8 1172 903 248 138 52 chr5 76994906 76995255 -75542004 - MTE2a LTR MaLR 0 379 1 8 1172 328 292 83 28 chr5 76996363 76996472 -75540787 + PB1 SINE Alu 10 124 -3 8 1172 196 128 25 25 chr5 76996506 76996546 -75540713 - MIRc SINE MIR -107 161 122 8 1172 222 327 0 0 chr5 76996713 76996768 -75540491 + B1F SINE Alu 2 56 -93 8 1172 180 212 14 83 chr5 76998396 76998468 -75538791 - MIRc SINE MIR -87 181 115 8 1172 272 139 0 3 chr5 76999519 76999565 -75537694 + L1M5 LINE L1 5735 5779 -665 8 1172 480 196 300 12 chr5 77000107 77000277 -75536982 + URR1B DNA MER1_type 1 219 -6 1 1172 224 318 87 13 chr5 77000600 77000750 -75536509 + MER5B DNA MER1_type 1 161 -17 2 1172 621 166 89 7 chr5 77001392 77001538 -75535721 - RLTR12B LTR ERVK 0 528 371 3 1172 218 314 78 0 chr5 77001565 77001667 -75535592 + MER5B DNA MER1_type 1 110 -68 4 1172 3679 68 3 95 chr5 77001690 77002261 -75534998 - MURVY-LTR LTR ERV1 0 519 1 5 1172 1579 173 19 47 chr5 77002262 77002487 -75534772 - RLTR12B LTR ERVK -174 354 129 3 1172 4281 27 0 0 chr5 77002487 77002969 -75534290 + LTRIS_Mm LTR ERV1 1 482 0 6 1172 1579 173 19 47 chr5 77002969 77003107 -75534152 - RLTR12B LTR ERVK -400 128 2 3 1172 354 191 0 0 chr5 77003891 77003954 -75533305 - B4A SINE B4 -209 83 21 7 1172 1225 44 61 0 chr5 77004552 77004733 -75532526 - MTB LTR MaLR 0 400 209 8 1172 1202 98 14 55 chr5 77004719 77004936 -75532323 + ORR1A2-int LTR MaLR 1756 1963 0 9 1172 1950 104 12 61 chr5 77004951 77005222 -75532037 + ORR1A2 LTR MaLR 9 273 -54 9 1172 1062 123 0 0 chr5 77005222 77005368 -75531891 + B1_Mus2 SINE Alu 2 147 0 1 1172 1950 104 12 61 chr5 77005368 77005423 -75531836 + ORR1A2 LTR MaLR 274 319 -8 9 1172 239 325 139 29 chr5 77006872 77007116 -75530143 + ORR1E LTR MaLR 89 359 0 1 1172 1230 48 0 0 chr5 77007542 77007689 -75529570 - B1_Mus2 SINE Alu 0 147 1 1 1172 741 113 0 0 chr5 77007993 77008108 -75529151 - ORR1B2 LTR MaLR 0 394 280 1 1172 1686 125 46 36 chr5 77008108 77008414 -75528845 - ORR1A2 LTR MaLR 0 327 19 1 1172 1246 109 137 13 chr5 77008417 77008650 -75528609 - ORR1B2 LTR MaLR -105 262 1 1 1172 877 70 0 8 chr5 77009022 77009152 -75528107 + ORR1A4-int LTR MaLR 1835 1963 0 1 1172 2057 136 19 0 chr5 77009152 77009475 -75527784 + ORR1A4 LTR MaLR 1 329 0 1 1172 437 174 0 21 chr5 77009750 77009762 -75527497 + A-rich Low_complexity Low_complexity 1 12 0 1 1172 1133 82 0 7 chr5 77009762 77009909 -75527350 + B1_Mus2 SINE Alu 1 146 -1 1 1172 666 0 0 0 chr5 77009909 77009983 -75527276 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1 1172 437 174 0 21 chr5 77009983 77010063 -75527196 + A-rich Low_complexity Low_complexity 13 91 0 1 1172 228 312 96 50 chr5 77010178 77010377 -75526882 + MTEb LTR MaLR 80 287 -72 2 1172 351 214 24 0 chr5 77010464 77010548 -75526711 + MTEb LTR MaLR 294 379 0 2 1172 1156 87 29 0 chr5 77010800 77010972 -75526287 - B2_Mm2 SINE B2 -6 189 13 2 1172 434 226 57 0 chr5 77011051 77011157 -75526102 - RSINE1 SINE B4 -6 159 48 2 1172 224 30 0 29 chr5 77011223 77011257 -75526002 + (TGGGGG)n Simple_repeat Simple_repeat 2 34 0 2 1172 1456 137 84 7 chr5 77011501 77011774 -75525485 + ORR1B1 LTR MaLR 99 392 -2 2 1172 897 266 28 0 chr5 77012046 77012264 -75524995 + MYSERV-int LTR ERVK 3989 4212 -4747 2 1172 1837 238 33 106 chr5 77012416 77013144 -75524115 + MYSERV-int LTR ERVK 4481 5155 -1395 2 1172 452 238 46 39 chr5 77013158 77013311 -75523948 + RMER4A LTR ERVK 283 436 -30 2 1172 4045 156 115 22 chr5 77013313 77014172 -75523087 + MYSERV6-int LTR ERVK 7764 8702 -257 2 1172 861 215 31 13 chr5 77014145 77014371 -75522888 + MYSERV-int LTR ERVK 6317 6546 -4 2 1172 634 248 70 42 chr5 77014374 77014660 -75522599 + RLTR15 LTR ERVK 1 294 -65 2 1172 369 304 158 0 chr5 77014703 77014874 -75522385 + MER20 DNA MER1_type 22 219 0 2 1172 258 274 94 10 chr5 77015094 77015189 -75522070 - ORR1E LTR MaLR -237 122 20 2 1172 887 187 87 91 chr5 77015189 77015278 -75521981 - ORR1D1 LTR MaLR 0 374 267 3 1172 2491 77 3 41 chr5 77015278 77015618 -75521641 + ORR1A2 LTR MaLR 1 327 0 3 1172 887 187 87 91 chr5 77015618 77015699 -75521560 - ORR1D1 LTR MaLR -108 266 202 3 1172 180 0 0 0 chr5 77015699 77015719 -75521540 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1172 1068 99 0 7 chr5 77015719 77015857 -75521402 - B1_Mus1 SINE Alu -5 143 6 3 1172 887 187 87 91 chr5 77015857 77015942 -75521317 - ORR1D1 LTR MaLR -173 201 123 3 1172 748 169 0 41 chr5 77016233 77016410 -75520849 - ORR1D1 LTR MaLR -246 128 1 3 1172 201 284 85 17 chr5 77017329 77017447 -75519812 - L2c LINE L2 -4 3383 3258 3 1172 25 0 0 0 chr5 77017746 77017771 -75519488 + GC_rich Low_complexity Low_complexity 1 25 0 3 1172 22 80 0 0 chr5 77017959 77018009 -75519250 + GC_rich Low_complexity Low_complexity 1 50 0 3 1172 201 39 0 0 chr5 77018094 77018120 -75519139 + (TCCG)n Simple_repeat Simple_repeat 4 29 0 3 1172 333 287 103 0 chr5 77019225 77019350 -75517909 + B1F2 SINE Alu 5 149 0 3 1172 359 204 28 75 chr5 77019968 77020074 -75517185 - PB1D9 SINE Alu -9 111 11 3 1172 238 220 40 25 chr5 77021173 77021259 -75516000 - ID2 SINE ID -60 92 6 4 1172 207 0 0 0 chr5 77021691 77021714 -75515545 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1172 847 244 92 15 chr5 77023770 77024041 -75513218 - B4A SINE B4 0 292 1 4 1172 235 216 59 0 chr5 77024592 77024643 -75512616 + tRNA-Ala-GCY_ tRNA tRNA 15 68 -7 4 1172 684 208 0 0 chr5 77026827 77026952 -75510307 + RSINE1 SINE B4 3 127 -38 4 1172 22 0 0 0 chr5 77027017 77027039 -75510220 + AT_rich Low_complexity Low_complexity 1 22 0 4 1172 5812 165 58 30 chr5 77027219 77028394 -75508865 - Lx2B LINE L1 0 7000 5793 4 1172 236 107 0 51 chr5 77028596 77028655 -75508604 + A-rich Low_complexity Low_complexity 1 56 0 4 1172 1005 154 149 0 chr5 77028693 77028888 -75508371 + URR1A DNA MER1_type 3 226 0 4 1172 23 0 0 0 chr5 77029973 77029996 -75507263 + AT_rich Low_complexity Low_complexity 1 23 0 4 1172 719 167 31 106 chr5 77030680 77030841 -75506418 - B1_Mur2 SINE Alu 0 149 1 5 1172 268 288 0 0 chr5 77031089 77031155 -75506104 + ID_B1 SINE B4 159 224 0 5 1172 25 31 0 0 chr5 77031196 77031228 -75506031 + AT_rich Low_complexity Low_complexity 1 32 0 5 1172 280 176 38 46 chr5 77031290 77031421 -75505838 + (TA)n Simple_repeat Simple_repeat 1 130 0 5 1172 236 147 130 14 chr5 77031636 77031705 -75505554 - MER33 DNA MER1_type -82 242 166 5 1172 364 268 10 30 chr5 77031758 77031858 -75505401 - MER33 DNA MER1_type -225 99 2 5 1172 300 221 127 25 chr5 77032530 77032544 -75504715 - PB1D9 SINE Alu -32 88 3 5 1172 339 188 16 0 chr5 77032544 77032608 -75504651 - MT2B LTR ERVL -370 231 167 5 1172 813 148 102 40 chr5 77032610 77032786 -75504473 - B2_Mm2 SINE B2 -8 187 1 5 1172 576 318 43 7 chr5 77033053 77033329 -75503930 - B4A SINE B4 -6 286 1 5 1172 312 287 104 43 chr5 77033512 77033792 -75503467 - Charlie2b DNA MER1_type -335 2447 2151 5 1172 230 300 14 0 chr5 77034052 77034122 -75503137 + ID4 SINE ID 7 77 -6 6 1172 332 279 47 8 chr5 77034262 77034410 -75502849 + L1M3 LINE L1 3964 4122 -2021 6 1172 269 271 23 23 chr5 77034410 77034497 -75502762 + PB1D10 SINE Alu 1 87 -30 6 1172 408 291 181 19 chr5 77034535 77034693 -75502566 + L1M3 LINE L1 4131 4314 -1826 6 1172 303 28 0 0 chr5 77034693 77034729 -75502530 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1172 408 291 181 19 chr5 77034729 77035057 -75502202 + L1M3 LINE L1 4315 4696 -1444 6 1172 232 296 42 14 chr5 77035060 77035132 -75502127 + ID4_ SINE ID 2 75 -8 6 1172 612 0 0 0 chr5 77035211 77035279 -75501980 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1172 456 316 109 21 chr5 77035869 77036208 -75501051 - L1MB7 LINE L1 -13 6171 5803 6 1172 1008 86 11 22 chr5 77036796 77036975 -75500284 + (TTCC)n Simple_repeat Simple_repeat 4 180 0 6 1172 785 169 0 42 chr5 77036975 77037117 -75500142 - B1_Mur4 SINE Alu -12 138 3 6 1172 206 203 0 59 chr5 77037695 77037763 -75499496 + T-rich Low_complexity Low_complexity 1 64 0 6 1172 211 234 0 0 chr5 77037701 77037748 -75499511 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 7 1172 1518 254 112 4 chr5 77037904 77038395 -75498864 - Lx7 LINE L1 -349 7347 6804 7 1172 243 146 0 0 chr5 77038517 77038558 -75498701 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 7 1172 333 0 0 0 chr5 77039442 77039479 -75497780 + (TTA)n Simple_repeat Simple_repeat 3 39 0 7 1172 3660 88 6 26 chr5 77039480 77040017 -75497242 - Lx3B LINE L1 0 6973 6448 7 1172 496 95 24 0 chr5 77040929 77041013 -75496246 + (TG)n Simple_repeat Simple_repeat 1 86 0 7 1172 1182 82 0 0 chr5 77041254 77041401 -75495858 - B1_Mus2 SINE Alu 0 147 1 7 1172 210 174 85 21 chr5 77041903 77041950 -75495309 + PB1D7 SINE Alu 9 58 -62 7 1172 455 255 87 7 chr5 77042657 77042795 -75494464 + B1F1 SINE Alu 1 149 0 7 1172 1355 175 125 12 chr5 77043557 77043886 -75493373 - ORR1D1 LTR MaLR -7 367 2 7 1172 281 307 155 14 chr5 77045139 77045281 -75491978 + B4A SINE B4 26 187 -105 8 1172 404 280 75 59 chr5 77045503 77045757 -75491502 - HAL1 LINE L1 -2227 280 23 8 1172 242 194 16 0 chr5 77046108 77046170 -75491089 + (CACAG)n Simple_repeat Simple_repeat 5 67 0 8 1172 4242 43 4 4 chr5 77046311 77046823 -75490436 - L1Md_F2 LINE L1 -1 6581 6070 8 1172 548 292 38 52 chr5 77046903 77047192 -75490067 - L1MB8 LINE L1 0 6178 5894 8 1172 1931 261 147 29 chr5 77048639 77049358 -75487901 - Lx8 LINE L1 -185 7288 6485 8 1172 227 294 59 0 chr5 77049851 77049919 -75487340 + ID4 SINE ID 12 83 0 8 1172 456 35 0 0 chr5 77049929 77049987 -75487272 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1172 874 205 36 111 chr5 77050758 77051038 -75486221 - MER2 DNA MER2_type -7 338 80 8 1172 484 300 194 43 chr5 77051423 77052043 -75485216 - MTE-int LTR MaLR -745 835 123 8 1172 371 314 85 55 chr5 77052162 77052469 -75484790 - ORR1E LTR MaLR -43 316 1 9 1172 1213 41 0 0 chr5 77053429 77053575 -75483684 + B1_Mm SINE Alu 2 147 0 9 1172 189 107 0 0 chr5 77053575 77053603 -75483656 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1172 27 0 0 0 chr5 77053623 77053650 -75483609 + AT_rich Low_complexity Low_complexity 1 27 0 9 1172 189 0 0 0 chr5 77054541 77054562 -75482697 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 9 1172 1204 41 0 7 chr5 77054679 77054827 -75482432 + B1_Mm SINE Alu 1 147 0 9 1172 233 235 0 12 chr5 77055689 77055775 -75481484 + CT-rich Low_complexity Low_complexity 6 90 0 9 1172 501 301 57 28 chr5 77056399 77056611 -75480648 - MER58B DNA MER1_type -57 284 67 9 1172 1032 156 27 22 chr5 77057073 77057257 -75480002 + B2_Mm2 SINE B2 1 185 -10 9 1172 335 238 0 0 chr5 77058387 77058450 -75478809 + URR1B DNA MER1_type 35 97 -128 9 1172 294 73 0 0 chr5 77061591 77061632 -75475627 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 1 1172 461 212 67 8 chr5 77061636 77061755 -75475504 - ID_B1 SINE B4 -16 208 83 1 1172 636 299 39 26 chr5 77062156 77062386 -75474873 + B4A SINE B4 2 234 -58 1 1172 453 116 0 0 chr5 77062467 77062536 -75474723 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1172 414 0 0 0 chr5 77063028 77063074 -75474185 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1172 249 83 0 0 chr5 77063074 77063110 -75474149 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1172 21 0 0 0 chr5 77063841 77063862 -75473397 + AT_rich Low_complexity Low_complexity 1 21 0 1 1172 327 224 0 0 chr5 77063960 77064036 -75473223 + (TA)n Simple_repeat Simple_repeat 1 76 0 1 1172 324 356 27 0 chr5 77064349 77064495 -75472764 + MLT1-int LTR MaLR 1 150 -1221 1 1172 839 234 91 25 chr5 77064590 77064921 -75472338 - ORR1E LTR MaLR -2 419 4 1 1172 34 42 0 0 chr5 77065502 77065550 -75471709 + AT_rich Low_complexity Low_complexity 1 48 0 1 1172 1137 75 7 0 chr5 77066428 77066575 -75470684 - B1_Mus1 SINE Alu 0 148 1 1 1172 24 0 0 0 chr5 77066581 77066605 -75470654 + AT_rich Low_complexity Low_complexity 1 24 0 1 1172 342 0 0 0 chr5 77068577 77068615 -75468644 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1172 373 312 0 0 chr5 77068622 77068731 -75468528 + PB1D10 SINE Alu 4 112 -5 1 1172 627 231 194 11 chr5 77069422 77069597 -75467662 + B3 SINE B2 2 208 -8 1 1172 425 259 14 22 chr5 77069655 77069770 -75467489 + PB1 SINE Alu 2 119 -8 1 1173 514 210 20 0 chr5 77070676 77070776 -75466483 + ID_B1 SINE B4 110 211 -13 1 1173 381 304 50 50 chr5 77071884 77072064 -75465195 - Charlie1b DNA MER1_type -343 180 1 1 1173 456 19 0 0 chr5 77072160 77072213 -75465046 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1173 427 304 57 48 chr5 77072825 77073053 -75464206 - MER21B LTR ERV1 -107 756 527 1 1173 297 265 49 70 chr5 77073143 77073285 -75463974 - MER21B LTR ERV1 -505 358 220 1 1173 627 241 68 60 chr5 77074192 77074459 -75462800 - ORR1D2 LTR MaLR -57 302 4 1 1173 297 0 0 0 chr5 77075720 77075753 -75461506 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1173 1615 42 0 5 chr5 77075770 77075963 -75461296 - B2_Mm1t SINE B2 0 193 2 1 1173 23 92 0 0 chr5 77076046 77076111 -75461148 + AT_rich Low_complexity Low_complexity 1 65 0 1 1173 249 278 0 53 chr5 77076583 77076659 -75460600 - Lx8 LINE L1 -756 6717 6646 1 1173 270 234 61 35 chr5 77076653 77076738 -75460521 - L1_Mur3 LINE L1 -3065 2782 2674 1 1173 435 233 166 37 chr5 77077212 77077399 -75459860 + L1_Mur3 LINE L1 4087 4297 -1583 1 1173 257 116 116 0 chr5 77077404 77077447 -75459812 + L1_Mur3 LINE L1 4250 4297 -1583 1 1173 263 266 65 46 chr5 77077564 77077814 -75459445 + L1MA4A LINE L1 5225 5494 -392 1 1173 756 0 0 0 chr5 77077828 77077912 -75459347 + (CTG)n Simple_repeat Simple_repeat 1 84 0 1 1173 429 269 109 36 chr5 77077977 77078170 -75459089 + L1MA4A LINE L1 5629 5867 -436 1 1173 2008 152 48 32 chr5 77078181 77078581 -75458678 + RMER4B LTR ERVK 18 423 -162 1 1173 369 0 0 0 chr5 77079050 77079091 -75458168 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1173 225 0 0 0 chr5 77079091 77079115 -75458144 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1173 259 141 12 49 chr5 77079302 77079384 -75457875 + GA-rich Low_complexity Low_complexity 1 79 0 1 1173 920 315 70 14 chr5 77079505 77079936 -75457323 - LTR40c LTR ERVL -5 460 6 1 1173 306 0 0 0 chr5 77079987 77080021 -75457238 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1173 288 0 0 0 chr5 77080050 77080082 -75457177 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1173 408 20 0 0 chr5 77080082 77080130 -75457129 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1173 278 254 43 118 chr5 77080267 77080385 -75456874 - HERVL40-int LTR ERVL -478 5052 4942 1 1173 1320 219 103 14 chr5 77080385 77080733 -75456526 + MTEb LTR MaLR 1 379 0 1 1173 278 254 43 118 chr5 77080733 77080775 -75456484 - HERVL40-int LTR ERVL -589 4941 4904 1 1173 1691 221 62 0 chr5 77081573 77081957 -75455302 + Lx9 LINE L1 6863 7270 -374 1 1173 321 271 0 12 chr5 77081960 77082046 -75455213 - L1MB4 LINE L1 -50 6130 6046 1 1173 632 129 47 12 chr5 77082598 77082770 -75454489 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 1173 1452 206 111 35 chr5 77082857 77083225 -75454034 + Lx6 LINE L1 7035 7430 -30 1 1173 373 210 12 47 chr5 77083250 77083335 -75453924 + ID4 SINE ID 1 82 -1 1 1173 238 283 11 0 chr5 77083374 77083466 -75453793 - L1M4 LINE L1 -3316 2830 2738 1 1173 945 155 15 81 chr5 77083736 77083933 -75453326 - B2_Mm2 SINE B2 -10 185 2 1 1173 1034 244 32 25 chr5 77084061 77084338 -75452921 + B4A SINE B4 12 290 -2 1 1173 592 283 105 59 chr5 77084408 77084780 -75452479 - L1MB8 LINE L1 -1 6177 5789 1 1173 823 114 8 0 chr5 77085617 77085740 -75451519 + B1_Mur4 SINE Alu 27 150 0 1 1173 290 18 16 81 chr5 77085740 77085802 -75451457 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 1 1173 369 0 0 0 chr5 77087767 77087808 -75449451 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1173 562 233 234 40 chr5 77088627 77088828 -75448431 - B4A SINE B4 -20 272 33 1 1173 723 196 0 0 chr5 77088900 77089038 -75448221 - ID_B1 SINE B4 0 224 87 1 1173 296 281 24 0 chr5 77089373 77089455 -75447804 - MIRc SINE MIR -87 181 98 1 1173 438 69 0 0 chr5 77089897 77089955 -75447304 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1173 468 355 35 19 chr5 77090481 77090737 -75446522 - MIRb SINE MIR -8 260 1 1 1173 787 326 21 13 chr5 77091368 77091607 -75445652 + B4A SINE B4 1 241 -51 1 1173 454 198 40 6 chr5 77091773 77091946 -75445313 + GA-rich Low_complexity Low_complexity 1 179 0 1 1173 711 104 55 0 chr5 77091957 77092121 -75445138 + GA-rich Low_complexity Low_complexity 1 173 0 1 1173 497 224 102 68 chr5 77092218 77092424 -75444835 - B3 SINE B2 -3 213 1 1 1173 398 250 10 29 chr5 77092649 77092752 -75444507 + PB1D10 SINE Alu 17 117 0 1 1173 23 0 0 0 chr5 77092970 77092993 -75444266 + AT_rich Low_complexity Low_complexity 1 23 0 1 1173 851 181 7 0 chr5 77093016 77093160 -75444099 + B1_Mm SINE Alu 3 147 0 1 1173 23 0 0 0 chr5 77094315 77094338 -75442921 + AT_rich Low_complexity Low_complexity 1 23 0 1 1173 444 335 64 6 chr5 77094556 77094727 -75442532 + MamSINE1 SINE tRNA 1 181 -109 1 1173 430 301 69 58 chr5 77095272 77095533 -75441726 + MER33 DNA MER1_type 61 324 0 1 1173 706 230 221 21 chr5 77095869 77096109 -75441150 + B4A SINE B4 1 288 -4 1 1173 953 151 167 5 chr5 77096834 77097020 -75440239 - B3 SINE B2 0 216 1 1 1173 270 0 0 0 chr5 77097042 77097072 -75440187 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1173 240 272 3 9 chr5 77097473 77097562 -75439697 - L2c LINE L2 -220 3155 3069 1 1173 550 275 64 0 chr5 77097585 77097756 -75439503 + MLT1A0 LTR MaLR 181 362 -3 1 1173 287 224 15 0 chr5 77098791 77098858 -75438401 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 1 1173 3891 104 4 7 chr5 77099705 77100255 -75437004 - Lx2B LINE L1 0 7000 6453 1 1173 1190 314 47 29 chr5 77100472 77101131 -75436128 - L1MB4 LINE L1 -231 5949 5214 1 1173 229 259 0 18 chr5 77101132 77101187 -75436072 + CT-rich Low_complexity Low_complexity 3 56 0 1 1173 322 252 103 17 chr5 77101187 77101304 -75435955 - L1MD LINE L1 -840 5306 5180 1 1173 1064 172 59 5 chr5 77102075 77102262 -75434997 - B3 SINE B2 -16 200 4 1 1173 333 0 0 0 chr5 77102403 77102440 -75434819 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1173 250 250 0 0 chr5 77102447 77102499 -75434760 - ID4_ SINE ID -4 79 28 1 1173 243 0 0 0 chr5 77102855 77102882 -75434377 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1173 1440 191 91 8 chr5 77103040 77103415 -75433844 - MTD LTR MaLR -13 406 1 1 1173 1381 196 134 9 chr5 77103652 77103981 -75433278 - ORR1D1 LTR MaLR -2 372 3 1 1173 518 95 0 10 chr5 77104074 77104170 -75433089 + (CAG)n Simple_repeat Simple_repeat 3 97 0 1 1173 372 119 0 0 chr5 77104702 77104761 -75432498 + (TCC)n Simple_repeat Simple_repeat 2 60 0 1 1173 324 212 0 15 chr5 77104849 77104916 -75432343 - B1F SINE Alu -63 86 21 1 1173 223 255 147 39 chr5 77104916 77104951 -75432308 - ID_B1 SINE B4 -60 164 52 1 1173 513 141 0 0 chr5 77105019 77105104 -75432155 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 1 1173 1217 40 0 20 chr5 77105110 77105261 -75431998 - B1_Mus1 SINE Alu 0 148 1 1 1173 410 231 3 26 chr5 77105299 77105653 -75431606 + (CA)n Simple_repeat Simple_repeat 1 345 0 1 1173 429 177 57 19 chr5 77105770 77105886 -75431373 - B1_Mur3 SINE Alu -5 115 2 1 1173 21 0 0 0 chr5 77106477 77106498 -75430761 + AT_rich Low_complexity Low_complexity 1 21 0 1 1173 268 337 12 0 chr5 77106507 77106593 -75430666 - L1MB3 LINE L1 -24 6147 6061 1 1173 391 306 0 47 chr5 77106695 77106850 -75430409 - L1MB3 LINE L1 -238 5941 5795 1 1173 232 316 0 38 chr5 77107005 77107084 -75430175 - PB1D10 SINE Alu -30 87 12 1 1173 1050 239 105 3 chr5 77107983 77108269 -75428990 + MTE2a LTR MaLR 63 377 -2 1 1173 1399 255 36 26 chr5 77108277 77108504 -75428755 + MTE2a-int LTR MaLR 12 235 -1345 1 1173 2827 76 36 24 chr5 77108504 77108924 -75428335 + L1_Mus3 LINE L1 6213 6637 -1 1 1173 1399 255 36 26 chr5 77108924 77109082 -75428177 + MTE2a-int LTR MaLR 236 401 -1179 1 1173 1725 295 165 19 chr5 77109052 77109875 -75427384 + MTE2a-int LTR MaLR 516 1458 -122 1 1173 900 238 127 24 chr5 77109935 77110116 -75427143 + MTE2a LTR MaLR 12 209 -170 1 1173 186 43 0 0 chr5 77110116 77110139 -75427120 + (C)n Simple_repeat Simple_repeat 1 23 0 1 1173 900 238 127 24 chr5 77110139 77110288 -75426971 + MTE2a LTR MaLR 210 376 -3 1 1173 244 211 39 13 chr5 77110511 77110588 -75426671 + MLT1B LTR MaLR 295 373 -17 1 1173 795 57 75 9 chr5 77110861 77111195 -75426064 + (TG)n Simple_repeat Simple_repeat 1 355 0 1 1173 500 220 222 34 chr5 77111263 77111509 -75425750 - MER57C2 LTR ERV1 -29 382 99 1 1173 211 204 0 22 chr5 77111813 77111858 -75425401 + G-rich Low_complexity Low_complexity 3 46 0 2 1173 319 151 0 0 chr5 77111884 77111937 -75425322 - HAL1-3A_ME LINE L1 -830 2028 1976 2 1173 693 114 0 0 chr5 77111938 77112043 -75425216 + (TATATG)n Simple_repeat Simple_repeat 2 106 0 2 1173 444 82 0 0 chr5 77112841 77112902 -75424357 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1173 246 226 106 12 chr5 77112906 77112991 -75424268 - PB1D7 SINE Alu -20 100 8 2 1173 535 273 133 125 chr5 77113367 77113807 -75423452 - L1MB7 LINE L1 -9 6175 5730 2 1173 368 301 154 0 chr5 77113807 77113950 -75423309 - RSINE1 SINE B4 0 165 1 2 1173 535 273 133 125 chr5 77113950 77114095 -75423164 - L1MB7 LINE L1 -455 5729 5585 2 1173 423 194 0 0 chr5 77114096 77114168 -75423091 + ID4 SINE ID 5 76 -7 2 1173 382 281 133 94 chr5 77114518 77114792 -75422467 - L1MB7 LINE L1 -742 5442 5149 2 1173 1071 109 0 0 chr5 77114792 77114939 -75422320 - B1_Mus1 SINE Alu 0 148 2 2 1173 382 279 132 108 chr5 77114939 77115029 -75422230 - L1MB7 LINE L1 -998 5148 5081 2 1173 746 174 7 40 chr5 77115029 77115179 -75422080 + B1_Mus2 SINE Alu 2 146 -1 2 1173 382 279 132 108 chr5 77115179 77115351 -75421908 - L1MB7 LINE L1 -1066 5080 4890 2 1173 673 260 46 52 chr5 77115646 77115991 -75421268 - RLTR15 LTR ERVK -16 343 1 2 1173 840 248 102 23 chr5 77116584 77116848 -75420411 + MTE2b LTR MaLR 1 285 -94 2 1173 606 281 15 59 chr5 77117263 77117467 -75419792 - B4 SINE B4 -97 195 1 2 1173 252 0 0 0 chr5 77118062 77118090 -75419169 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1173 506 273 0 24 chr5 77118219 77118343 -75418916 - B1F SINE Alu -5 144 24 2 1173 447 19 0 0 chr5 77119920 77119972 -75417287 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1173 396 40 0 0 chr5 77119972 77120021 -75417238 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1173 881 281 78 63 chr5 77120114 77120631 -75416628 + MT2A LTR ERVL 1 563 0 2 1173 297 318 0 52 chr5 77122445 77122581 -75414678 + MTE2b LTR MaLR 246 374 -5 2 1173 363 206 27 0 chr5 77123521 77123594 -75413665 - RSINE1 SINE B4 -13 152 78 2 1173 214 83 40 40 chr5 77123603 77123653 -75413606 + (TCTCTG)n Simple_repeat Simple_repeat 6 55 0 2 1173 450 0 0 0 chr5 77123703 77123753 -75413506 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1173 551 228 190 38 chr5 77123821 77124058 -75413201 - B4A SINE B4 -19 273 1 2 1173 1712 118 95 45 chr5 77124577 77124914 -75412345 - ORR1B1 LTR MaLR 0 394 41 2 1173 895 147 0 65 chr5 77124968 77125121 -75412138 - B1_Mur4 SINE Alu -7 143 1 2 1173 1423 81 5 0 chr5 77125399 77125585 -75411674 - B2_Mm1t SINE B2 -5 188 2 2 1173 405 0 0 0 chr5 77126097 77126142 -75411117 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1173 727 267 188 0 chr5 77127292 77127558 -75409701 + MLT1B LTR MaLR 4 319 -71 2 1173 188 0 0 69 chr5 77127567 77127596 -75409663 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1173 257 253 33 11 chr5 77127676 77127768 -75409491 + (TA)n Simple_repeat Simple_repeat 2 95 0 2 1173 854 146 29 47 chr5 77127859 77128031 -75409228 - Lx4A LINE L1 -1 7057 6889 2 1173 863 196 0 0 chr5 77128088 77128226 -75409033 + B1_Mur2 SINE Alu 1 138 -11 2 1173 603 232 178 5 chr5 77129020 77129211 -75408048 + B4A SINE B4 1 224 -68 2 1173 1069 227 135 12 chr5 77129212 77129538 -75407721 + RMER1B Other Other 701 1066 0 2 1173 254 106 21 0 chr5 77129659 77129706 -75407553 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1173 260 205 83 12 chr5 77129929 77130013 -75407246 - RSINE1 SINE B4 -74 91 2 2 1173 344 320 44 74 chr5 77130281 77130578 -75406681 - L1M5 LINE L1 -486 5754 5467 2 1173 193 312 26 65 chr5 77131222 77131349 -75405910 + L2a LINE L2 3256 3426 0 2 1173 228 100 0 0 chr5 77131761 77131801 -75405458 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1173 303 250 0 132 chr5 77133176 77133282 -75403977 + MT2B LTR ERVL 150 241 -360 2 1173 488 195 17 42 chr5 77133199 77133317 -75403942 + PB1D9 SINE Alu 6 120 0 2 1173 2017 151 93 54 chr5 77134046 77134488 -75402771 - RMER6B LTR ERVK -2 459 1 2 1173 1155 65 0 0 chr5 77136556 77136694 -75400565 + B1_Mus2 SINE Alu 2 139 -8 2 1173 200 245 61 0 chr5 77136722 77136771 -75400488 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 2 1173 284 135 54 0 chr5 77137515 77137589 -75399670 + GA-rich Low_complexity Low_complexity 1 78 0 2 1173 450 194 107 53 chr5 77137915 77138046 -75399213 + B1F SINE Alu 4 141 -8 2 1173 288 0 0 0 chr5 77138047 77138079 -75399180 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1173 492 48 0 0 chr5 77138079 77138141 -75399118 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1173 27 0 0 0 chr5 77138167 77138194 -75399065 + AT_rich Low_complexity Low_complexity 1 27 0 2 1173 668 264 5 2 chr5 77138207 77138379 -75398880 + L1MB2 LINE L1 5854 6028 -214 2 1173 269 233 50 0 chr5 77138405 77138465 -75398794 + RSINE1 SINE B4 83 145 -20 2 1173 401 18 54 0 chr5 77138467 77138523 -75398736 + (CATAT)n Simple_repeat Simple_repeat 1 59 0 2 1173 210 160 0 0 chr5 77138794 77138844 -75398415 + (CATG)n Simple_repeat Simple_repeat 2 51 0 2 1173 186 43 0 0 chr5 77140620 77140643 -75396616 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2 1173 351 277 0 11 chr5 77140826 77140921 -75396338 - MIRc SINE MIR -114 154 61 2 1173 347 294 107 40 chr5 77141234 77141383 -75395876 + Lx8 LINE L1 7065 7223 -250 2 1173 209 197 14 0 chr5 77142177 77142248 -75395011 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 1173 227 302 35 0 chr5 77142688 77142804 -75394455 - MER97b DNA MER1_type? -330 723 604 2 1173 378 316 179 7 chr5 77142967 77143241 -75394018 - MER97b DNA MER1_type? -716 337 17 2 1173 189 0 0 0 chr5 77143686 77143707 -75393552 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1173 525 252 51 0 chr5 77144122 77144360 -75392899 - L1MA4A LINE L1 -89 6211 5960 2 1173 373 325 96 34 chr5 77144373 77144666 -75392593 - MLT1A LTR MaLR -63 311 1 2 1173 226 356 40 13 chr5 77144666 77144817 -75392442 - MIR SINE MIR -99 163 9 2 1173 514 117 62 0 chr5 77145684 77145778 -75391481 + B2_Mm2 SINE B2 49 160 -38 2 1173 811 218 114 0 chr5 77145877 77146070 -75391189 + B3 SINE B2 2 216 0 2 1173 342 152 0 0 chr5 77146070 77146129 -75391130 + GA-rich Low_complexity Low_complexity 5 63 0 2 1173 808 103 7 82 chr5 77146189 77146501 -75390758 + GA-rich Low_complexity Low_complexity 1 288 0 2 1173 297 123 0 44 chr5 77146483 77146551 -75390708 + A-rich Low_complexity Low_complexity 1 65 0 2 1173 418 198 32 40 chr5 77146553 77146679 -75390580 - L1MC4 LINE L1 -798 7244 7120 2 1173 1008 61 13 13 chr5 77146777 77146927 -75390332 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 2 1173 542 15 15 0 chr5 77146944 77147011 -75390248 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 2 1173 570 190 0 0 chr5 77147021 77147137 -75390122 + (TA)n Simple_repeat Simple_repeat 1 116 0 2 1173 393 307 127 18 chr5 77147187 77147416 -75389843 - L1MC4 LINE L1 -1033 7009 6756 2 1173 224 303 26 13 chr5 77147686 77147763 -75389496 - B1F2 SINE Alu -67 82 5 2 1173 244 228 0 34 chr5 77148048 77148107 -75389152 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 2 1173 690 187 0 0 chr5 77148760 77148915 -75388344 + (TG)n Simple_repeat Simple_repeat 2 156 0 2 1173 501 226 308 0 chr5 77149479 77149638 -75387621 - B3 SINE B2 -6 210 3 2 1173 387 0 0 0 chr5 77149653 77149696 -75387563 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1173 290 304 0 11 chr5 77150112 77150205 -75387054 - B1_Mur1 SINE Alu -34 115 24 2 1173 181 273 36 0 chr5 77150335 77150390 -75386869 - L2b LINE L2 -9 3366 3310 2 1173 235 0 0 54 chr5 77150651 77150688 -75386571 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1173 1878 177 77 0 chr5 77150744 77151095 -75386164 - ORR1C1 LTR MaLR 0 378 1 2 1173 234 271 0 0 chr5 77151377 77151462 -75385797 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1173 2348 108 89 3 chr5 77151615 77151976 -75385283 - ORR1B1 LTR MaLR -2 392 1 2 1173 1818 303 74 44 chr5 77152481 77152897 -75384362 - Lx8 LINE L1 -85 7388 6952 2 1173 447 19 0 0 chr5 77152897 77152949 -75384310 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1173 1818 303 74 44 chr5 77152949 77153357 -75383902 - Lx8 LINE L1 -522 6951 6540 2 1173 1163 194 10 0 chr5 77154042 77154243 -75383016 - B3 SINE B2 -13 203 1 2 1173 462 289 26 32 chr5 77154419 77154573 -75382686 - RSINE1 SINE B4 -2 163 11 2 1173 344 329 39 34 chr5 77155003 77155182 -75382077 + MER33 DNA MER1_type 1 180 -144 2 1173 288 0 0 0 chr5 77156160 77156192 -75381067 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1173 376 295 86 0 chr5 77156195 77156300 -75380959 - PB1D10 SINE Alu 0 117 4 2 1173 3425 33 2 2 chr5 77156575 77156972 -75380287 + MTB LTR MaLR 3 399 -1 2 1173 581 259 58 17 chr5 77157818 77157991 -75379268 + B3A SINE B2 1 180 -18 2 1173 626 122 83 9 chr5 77158239 77158347 -75378912 + PB1D9 SINE Alu 4 119 -1 2 1173 629 258 6 35 chr5 77158382 77158551 -75378708 + B3A SINE B2 1 164 -34 2 1173 1905 170 36 0 chr5 77158615 77158980 -75378279 - MTC-int LTR MaLR -389 869 492 2 1173 693 213 155 15 chr5 77159000 77159200 -75378059 - MTC-int LTR MaLR -1030 228 1 2 1173 2247 161 19 24 chr5 77159204 77159617 -75377642 - MTC LTR MaLR -8 413 3 2 1173 290 282 88 69 chr5 77159843 77160003 -75377256 + RSINE1 SINE B4 3 165 0 2 1173 255 173 0 0 chr5 77160006 77160058 -75377201 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1173 279 0 0 0 chr5 77160058 77160089 -75377170 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1173 237 144 204 32 chr5 77160136 77160229 -75377030 + L1MEc LINE L1 100 208 -6192 2 1173 902 177 6 0 chr5 77160253 77160411 -75376848 + URR1B DNA MER1_type 17 175 -50 2 1173 1014 54 0 0 chr5 77161097 77161226 -75376033 + (CAAAC)n Simple_repeat Simple_repeat 5 133 0 2 1173 253 197 28 0 chr5 77161415 77161486 -75375773 + GA-rich Low_complexity Low_complexity 3 75 0 2 1173 199 331 24 32 chr5 77162697 77162822 -75374437 - MIRb SINE MIR -29 239 116 3 1173 1369 79 6 6 chr5 77162847 77163026 -75374233 + B2_Mm2 SINE B2 3 181 -14 3 1173 189 0 0 0 chr5 77163030 77163051 -75374208 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1173 24 0 0 0 chr5 77163188 77163212 -75374047 + AT_rich Low_complexity Low_complexity 1 24 0 3 1173 369 252 81 0 chr5 77163241 77163340 -75373919 + PB1D9 SINE Alu 1 107 -13 3 1173 567 0 0 0 chr5 77163347 77163410 -75373849 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 3 1173 400 338 110 6 chr5 77163425 77163589 -75373670 + B4A SINE B4 25 205 -87 3 1173 254 291 22 34 chr5 77163601 77163690 -75373569 - MTE-int LTR MaLR -1207 373 286 3 1173 372 305 125 48 chr5 77163921 77164169 -75373090 - ORR1E LTR MaLR -11 348 82 3 1173 903 248 39 129 chr5 77164207 77164540 -75372719 + MTE2b LTR MaLR 15 317 -62 3 1173 2416 115 5 15 chr5 77164540 77164930 -75372329 + ORR1B1 LTR MaLR 1 386 -8 3 1173 234 227 30 0 chr5 77164975 77165041 -75372218 - ORR1E LTR MaLR -291 68 1 3 1173 1045 140 130 0 chr5 77165107 77165307 -75371952 + URR1A DNA MER1_type 1 226 0 3 1173 250 208 0 0 chr5 77165483 77165536 -75371723 + MTEa LTR MaLR 1 53 -326 3 1173 262 309 11 15 chr5 77166364 77166469 -75370790 + CT-rich Low_complexity Low_complexity 1 104 0 3 1173 246 329 0 0 chr5 77166469 77166539 -75370720 - ID4_ SINE ID -13 70 1 3 1173 247 350 0 20 chr5 77166539 77166556 -75370703 + polypyrimidine Low_complexity Low_complexity 4 19 0 3 1173 345 325 18 7 chr5 77166722 77166924 -75370335 - L1M5 LINE L1 -2251 3895 3693 3 1173 246 217 9 132 chr5 77168010 77168116 -75369143 - L1M4 LINE L1 -664 5576 5484 3 1173 870 304 74 40 chr5 77168118 77168495 -75368764 + MLT1B LTR MaLR 1 390 0 3 1173 329 259 56 0 chr5 77168495 77168603 -75368656 - L1M4 LINE L1 -717 5467 5354 3 1173 313 228 0 71 chr5 77168707 77168792 -75368467 - BC1_Mm scRNA scRNA -49 103 25 3 1173 603 126 0 0 chr5 77169139 77169234 -75368025 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 3 1173 786 138 0 16 chr5 77169720 77169845 -75367414 + B3 SINE B2 8 130 -86 3 1173 209 309 58 102 chr5 77170116 77170253 -75367006 + MIRb SINE MIR 124 254 -14 3 1173 340 297 90 0 chr5 77170623 77170768 -75366491 - L1MC4a LINE L1 -455 7427 7270 3 1173 885 192 8 0 chr5 77170816 77171083 -75366176 + CT-rich Low_complexity Low_complexity 1 269 0 3 1173 297 0 0 0 chr5 77172041 77172074 -75365185 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1173 1918 152 110 0 chr5 77172226 77172580 -75364679 + ORR1B1 LTR MaLR 2 394 0 3 1173 220 116 70 0 chr5 77173529 77173572 -75363687 + A-rich Low_complexity Low_complexity 3 48 0 3 1173 358 355 51 41 chr5 77173624 77173821 -75363438 - MLT1I LTR MaLR -41 370 172 3 1173 350 267 240 0 chr5 77173995 77174145 -75363114 - MIR SINE MIR -21 241 56 3 1173 563 307 153 12 chr5 77174596 77174837 -75362422 + Lx8 LINE L1 7053 7327 -146 3 1173 696 197 8 30 chr5 77175834 77175949 -75361310 + B1_Mur4 SINE Alu 18 131 -19 3 1173 240 35 0 0 chr5 77175949 77175978 -75361281 + (CAAT)n Simple_repeat Simple_repeat 3 31 0 3 1173 696 197 8 30 chr5 77175978 77175993 -75361266 + B1_Mur4 SINE Alu 132 145 -5 3 1173 1927 152 64 14 chr5 77176068 77176428 -75360831 + ORR1C1 LTR MaLR 1 378 0 3 1173 243 262 30 15 chr5 77176777 77176843 -75360416 - RLTR20A LTR ERVK 0 541 475 3 1173 300 27 0 0 chr5 77176843 77176880 -75360379 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1173 1277 202 25 29 chr5 77176888 77177215 -75360044 - RLTR20A LTR ERVK -106 435 1 3 1173 270 273 15 0 chr5 77177249 77177315 -75359944 - ID4_ SINE ID -15 68 2 3 1173 383 53 0 34 chr5 77177837 77177896 -75359363 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 3 1173 787 173 7 14 chr5 77177896 77178037 -75359222 - B1_Mur4 SINE Alu -9 141 2 3 1173 467 209 76 25 chr5 77178461 77178579 -75358680 + RSINE1 SINE B4 4 127 -38 3 1173 377 233 47 37 chr5 77178745 77178852 -75358407 - MER58A DNA MER1_type -8 216 109 3 1173 424 321 35 21 chr5 77178949 77179092 -75358167 - MER58A DNA MER1_type -76 148 4 3 1173 656 213 6 51 chr5 77179522 77179680 -75357579 - MTD LTR MaLR -268 151 1 3 1173 670 296 71 37 chr5 77179695 77179952 -75357307 - L1MA8 LINE L1 -367 5924 5657 3 1173 760 201 52 37 chr5 77179952 77180143 -75357116 + B2_Mm2 SINE B2 1 194 -1 3 1173 670 296 71 37 chr5 77180143 77180180 -75357079 - L1MA8 LINE L1 -635 5656 5620 3 1173 234 265 24 12 chr5 77181697 77181781 -75355478 + GA-rich Low_complexity Low_complexity 2 86 0 3 1173 180 0 0 0 chr5 77183571 77183591 -75353668 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1173 1135 79 0 0 chr5 77183705 77183845 -75353414 - B1_Mm SINE Alu -7 140 1 3 1173 308 218 0 71 chr5 77183961 77184045 -75353214 + MT2B LTR ERVL 187 264 -337 3 1173 745 101 9 0 chr5 77183970 77184079 -75353180 + B1_Mus1 SINE Alu 39 148 0 3 1173 219 146 0 0 chr5 77184080 77184121 -75353138 + (A)n Simple_repeat Simple_repeat 1 41 0 3 1173 422 323 83 32 chr5 77184222 77184535 -75352724 - L1M3 LINE L1 -561 5622 5294 3 1173 1075 286 72 41 chr5 77184578 77185135 -75352124 + L1ME2 LINE L1 5485 6058 -106 3 1173 638 254 8 0 chr5 77185186 77185320 -75351939 + B1_Mur2 SINE Alu 13 147 -2 3 1173 1074 108 4 0 chr5 77185827 77186067 -75351192 + (TTC)n Simple_repeat Simple_repeat 1 241 0 3 1173 186 133 0 0 chr5 77186067 77186097 -75351162 + (TCC)n Simple_repeat Simple_repeat 2 31 0 3 1173 1076 187 34 0 chr5 77186136 77186345 -75350914 - B3 SINE B2 0 216 1 3 1173 315 136 0 0 chr5 77186553 77186612 -75350647 + (ATTG)n Simple_repeat Simple_repeat 1 59 0 3 1173 314 150 0 77 chr5 77186970 77187035 -75350224 - HAL1-3A_ME LINE L1 -823 2035 1976 3 1173 675 183 0 0 chr5 77187058 77187238 -75350021 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1173 696 178 0 0 chr5 77187254 77187434 -75349825 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1173 741 177 0 0 chr5 77187478 77187765 -75349494 + (TG)n Simple_repeat Simple_repeat 1 287 0 3 1173 236 296 0 0 chr5 77187768 77187812 -75349447 - PB1D10 SINE Alu -73 44 1 3 1173 331 172 0 0 chr5 77187933 77187991 -75349268 - B3 SINE B2 -158 58 1 3 1173 468 123 0 0 chr5 77188827 77188900 -75348359 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 1173 199 370 0 0 chr5 77188994 77189067 -75348192 + MIR SINE MIR 59 131 -131 3 1173 299 329 26 26 chr5 77189465 77189618 -75347641 - L2a LINE L2 -336 3090 2938 3 1173 395 263 78 35 chr5 77189660 77189719 -75347540 - MLT1A1 LTR MaLR 0 408 351 3 1173 192 40 0 0 chr5 77189719 77189744 -75347515 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 3 1173 395 263 78 35 chr5 77189744 77189826 -75347433 - MLT1A1 LTR MaLR -58 350 261 3 1173 225 94 0 0 chr5 77190414 77190446 -75346813 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1173 208 256 0 0 chr5 77192099 77192142 -75345117 + CT-rich Low_complexity Low_complexity 1 43 0 3 1173 227 79 0 26 chr5 77192142 77192181 -75345078 + (CCCCCT)n Simple_repeat Simple_repeat 5 42 0 3 1173 761 173 117 0 chr5 77193406 77193585 -75343674 - Lx3C LINE L1 -2 6974 6775 3 1173 490 253 81 77 chr5 77194154 77194389 -75342870 + MTEb LTR MaLR 53 288 -91 3 1173 433 301 56 58 chr5 77194669 77195025 -75342234 - MLT1D LTR MaLR -117 388 41 3 1173 231 175 0 0 chr5 77195244 77195284 -75341975 + B3A SINE B2 1 40 -158 3 1173 921 103 15 1 chr5 77195285 77195434 -75341825 + B2_Mm2 SINE B2 2 162 -54 3 1173 184 59 0 56 chr5 77195448 77195484 -75341775 + (TTA)n Simple_repeat Simple_repeat 1 34 0 3 1173 479 197 80 98 chr5 77195485 77195648 -75341611 + B3 SINE B2 55 214 -2 3 1173 371 301 58 22 chr5 77195735 77195874 -75341385 - B1F1 SINE Alu -5 144 1 3 1173 558 216 56 0 chr5 77196265 77196390 -75340869 - B1_Mur1 SINE Alu -13 136 5 3 1173 877 262 40 18 chr5 77196573 77196845 -75340414 + MLT1A0 LTR MaLR 88 365 0 3 1173 424 193 34 84 chr5 77197061 77197180 -75340079 - B3 SINE B2 0 216 104 3 1173 1023 243 26 107 chr5 77197530 77197876 -75339383 + MTEa LTR MaLR 62 379 0 3 1173 982 87 68 99 chr5 77198133 77198325 -75338934 - B2_Mm2 SINE B2 -8 187 2 3 1173 23 0 0 0 chr5 77198339 77198362 -75338897 + AT_rich Low_complexity Low_complexity 1 23 0 3 1173 265 316 0 0 chr5 77199982 77200039 -75337220 - B1_Mus2 SINE Alu -89 58 2 3 1173 207 0 0 0 chr5 77200176 77200199 -75337060 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1173 1104 79 0 0 chr5 77200210 77200349 -75336910 - B1_Mus2 SINE Alu -8 139 1 3 1173 349 275 83 0 chr5 77201099 77201208 -75336051 + PB1 SINE Alu 1 118 -9 3 146 1399 74 16 11 chr5 77201307 77201498 -75335761 + B2_Mm2 SINE B2 2 193 -2 3 1174 342 0 0 0 chr5 77202380 77202418 -75334841 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1174 612 228 31 82 chr5 77202532 77202728 -75334531 - ID_B1 SINE B4 -38 186 1 3 1174 514 239 9 17 chr5 77203416 77203531 -75333728 + PB1 SINE Alu 14 127 0 3 1174 405 298 17 9 chr5 77204631 77204746 -75332513 + PB1 SINE Alu 1 116 -11 3 1174 315 300 27 48 chr5 77205098 77205245 -75332014 - MamRep434 DNA TcMar -113 313 170 3 1174 21 36 0 0 chr5 77205261 77205289 -75331970 + AT_rich Low_complexity Low_complexity 1 28 0 3 1174 1048 82 25 0 chr5 77205310 77205469 -75331790 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 3 1174 1256 14 0 0 chr5 77205484 77205627 -75331632 - MTA_Mm LTR MaLR 0 396 254 3 1174 5606 44 19 1 chr5 77205625 77206328 -75330931 - MTA_Mm-int LTR MaLR -383 715 1 3 1174 3593 15 2 0 chr5 77206328 77206723 -75330536 - MTA_Mm LTR MaLR 0 396 1 3 1174 240 296 152 43 chr5 77206727 77206819 -75330440 - PB1D10 SINE Alu -12 105 4 3 1174 286 265 0 11 chr5 77207078 77207168 -75330091 - ID4 SINE ID -51 101 16 3 1174 251 85 0 21 chr5 77207195 77207243 -75330016 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1174 324 0 0 0 chr5 77207532 77207568 -75329691 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1174 351 113 0 0 chr5 77207634 77207687 -75329572 + (TGG)n Simple_repeat Simple_repeat 3 55 0 4 1174 623 160 0 10 chr5 77209927 77210028 -75327231 + RLTR26 LTR ERVK 1 100 -542 4 1174 911 318 103 32 chr5 77210617 77210958 -75326301 - MLT1A0 LTR MaLR 0 365 1 4 1174 213 336 39 85 chr5 77211017 77211147 -75326112 + L2c LINE L2 3253 3376 -11 4 1174 315 0 0 0 chr5 77211981 77212016 -75325243 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1174 1138 268 110 41 chr5 77212264 77212700 -75324559 - MLT1C LTR MaLR 0 467 2 4 1174 308 227 192 7 chr5 77214496 77214647 -75322612 - L1MC5 LINE L1 -537 7424 7246 4 1174 648 133 0 0 chr5 77214679 77214799 -75322460 + (TG)n Simple_repeat Simple_repeat 1 120 0 4 1174 393 303 84 47 chr5 77214799 77215018 -75322241 - L1MC LINE L1 -1204 4942 4716 4 1174 1929 161 126 0 chr5 77215018 77215366 -75321893 + ORR1B1 LTR MaLR 3 394 0 4 1174 310 314 100 65 chr5 77215366 77215379 -75321880 - L1MC LINE L1 -1431 4715 4707 4 1174 2359 123 3 6 chr5 77215379 77215722 -75321537 - ORR1A1 LTR MaLR 0 346 5 4 1174 310 314 100 65 chr5 77215722 77215782 -75321477 - L1MC LINE L1 -1440 4706 4643 4 1174 269 51 0 25 chr5 77216457 77216497 -75320762 + (TTG)n Simple_repeat Simple_repeat 3 41 0 4 1174 397 281 0 42 chr5 77216498 77216617 -75320642 - PB1D7 SINE Alu -6 114 1 4 1174 293 262 0 0 chr5 77216781 77216842 -75320417 - PB1 SINE Alu -30 97 37 4 1174 446 0 19 0 chr5 77216882 77216936 -75320323 + (TCC)n Simple_repeat Simple_repeat 1 55 0 4 1174 372 274 25 109 chr5 77217507 77217626 -75319633 + RSINE1 SINE B4 57 165 0 4 1174 270 318 37 83 chr5 77218099 77218395 -75318864 - ORR1E LTR MaLR -10 360 86 4 1174 226 265 43 14 chr5 77218462 77218531 -75318728 - L1MC5 LINE L1 -1299 6743 6673 4 1174 342 98 0 0 chr5 77218534 77218585 -75318674 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1174 364 222 0 0 chr5 77218588 77218651 -75318608 + ID4 SINE ID 21 83 0 4 1174 317 296 0 0 chr5 77219089 77219170 -75318089 - MER58A DNA MER1_type -96 128 48 4 1174 844 173 0 0 chr5 77219205 77219344 -75317915 + B1_Mus2 SINE Alu 9 147 0 4 1174 820 103 18 61 chr5 77219489 77219766 -75317493 + C-rich Low_complexity Low_complexity 1 264 0 4 1174 22 0 0 0 chr5 77220222 77220244 -75317015 + AT_rich Low_complexity Low_complexity 1 22 0 4 1174 899 309 58 52 chr5 77220374 77220858 -75316401 - Lx8 LINE L1 -57 7416 6930 4 1174 424 322 35 48 chr5 77220872 77221069 -75316190 - B4A SINE B4 -6 286 93 4 1174 189 0 0 0 chr5 77221069 77221090 -75316169 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 1174 424 322 35 48 chr5 77221090 77221182 -75316077 - B4A SINE B4 -200 92 1 4 1174 221 350 93 8 chr5 77221345 77221463 -75315796 + MIR SINE MIR 65 192 -70 4 1174 448 315 101 9 chr5 77221660 77221878 -75315381 + MLT1A1 LTR MaLR 76 313 -95 4 1174 1474 48 32 5 chr5 77222662 77222849 -75314410 - B2_Mm2 SINE B2 -2 193 2 4 1174 279 200 60 0 chr5 77223262 77223312 -75313947 - PB1D7 SINE Alu -8 112 60 4 1174 333 118 0 0 chr5 77223398 77223449 -75313810 + (ATG)n Simple_repeat Simple_repeat 3 53 0 4 1174 453 265 87 13 chr5 77224095 77224244 -75313015 + Tigger5 DNA MER2_type 2246 2405 -1 4 1174 201 74 0 0 chr5 77224286 77224313 -75312946 + (ATTG)n Simple_repeat Simple_repeat 3 29 0 4 1174 710 268 88 83 chr5 77224604 77225105 -75312154 - L1ME1 LINE L1 -347 6012 5500 4 1174 365 240 122 24 chr5 77225112 77225317 -75311942 - L1MC LINE L1 -744 5402 5178 4 1174 189 0 0 0 chr5 77225318 77225339 -75311920 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1174 1037 266 31 41 chr5 77225377 77225667 -75311592 - B4A SINE B4 -5 287 1 4 1174 472 315 40 15 chr5 77225777 77226051 -75311208 - Lx9 LINE L1 -23 7621 7341 4 1174 582 206 29 44 chr5 77226217 77226354 -75310905 + B1_Mur1 SINE Alu 2 136 -13 4 1174 430 165 0 30 chr5 77226405 77226505 -75310754 + GA-rich Low_complexity Low_complexity 3 99 0 4 1174 1286 78 0 6 chr5 77226505 77226686 -75310573 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1174 252 231 57 104 chr5 77228116 77228222 -75309037 - ORR1E LTR MaLR -258 101 1 4 1174 807 151 0 52 chr5 77228332 77228486 -75308773 + B1_Mm SINE Alu 1 146 -1 4 1174 255 231 11 114 chr5 77229041 77229129 -75308130 - MER34 LTR ERV1 -89 453 375 4 1174 1264 204 0 4 chr5 77229474 77229701 -75307558 - URR1A DNA MER1_type 0 226 1 4 1174 285 98 0 0 chr5 77229988 77230029 -75307230 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1174 987 128 64 43 chr5 77230430 77230618 -75306641 + B2_Mm2 SINE B2 1 192 -3 4 1174 3008 42 0 0 chr5 77230696 77231055 -75306204 - L1Md_F2 LINE L1 -12 6570 6212 4 1174 1248 62 79 0 chr5 77231071 77231248 -75306011 - B2_Mm1t SINE B2 -2 191 1 4 1174 234 73 98 0 chr5 77231373 77231414 -75305845 + URR1B DNA MER1_type 181 225 0 4 1174 408 138 24 48 chr5 77231414 77231482 -75305777 + B1_Mur1 SINE Alu 84 149 0 4 1174 213 175 0 0 chr5 77231651 77231691 -75305568 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1174 501 47 0 0 chr5 77231691 77231755 -75305504 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 4 1174 2230 112 3 3 chr5 77232499 77232813 -75304446 + ORR1A1 LTR MaLR 25 338 -8 4 1174 416 298 71 71 chr5 77232900 77233153 -75304106 - L2c LINE L2 -53 3334 3082 4 1174 238 250 84 32 chr5 77233172 77233267 -75303992 - MTEa LTR MaLR -2 377 278 4 1174 1253 243 102 38 chr5 77233570 77234023 -75303236 + Kanga2_a DNA Tc2 7 488 -400 4 1174 180 258 58 43 chr5 77234613 77234682 -75302577 + L2 LINE L2 2876 2945 -474 4 1174 251 260 14 0 chr5 77235091 77235164 -75302095 + B4 SINE B4 1 74 -218 4 1174 375 60 0 0 chr5 77235181 77235231 -75302028 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1174 199 194 16 31 chr5 77235241 77235305 -75301954 + GA-rich Low_complexity Low_complexity 3 65 0 4 1174 397 222 61 82 chr5 77235478 77235625 -75301634 + B1F SINE Alu 1 144 -5 4 1174 36 0 0 21 chr5 77235629 77235652 -75301607 + AT_rich Low_complexity Low_complexity 1 23 0 4 1174 1250 77 71 0 chr5 77235652 77235820 -75301439 + B2_Mm2 SINE B2 2 181 -14 4 1174 36 0 0 21 chr5 77235820 77235843 -75301416 + AT_rich Low_complexity Low_complexity 1 23 0 4 1174 277 313 106 36 chr5 77235906 77236264 -75300995 + HAL1 LINE L1 800 1182 -1325 4 1174 1063 86 0 0 chr5 77236557 77236696 -75300563 - B1_Mus2 SINE Alu -7 140 2 4 1174 3002 51 19 53 chr5 77236990 77237404 -75299855 + MTB LTR MaLR 1 400 0 4 1174 327 152 0 0 chr5 77239763 77239842 -75297417 + (TCTG)n Simple_repeat Simple_repeat 2 80 0 4 1174 1027 238 175 169 chr5 77239871 77240162 -75297097 - Lx8 LINE L1 -326 7147 6792 4 1174 429 109 0 0 chr5 77240162 77240226 -75297033 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 4 1174 459 283 71 0 chr5 77240230 77240329 -75296930 - B1_Mur2 SINE Alu -43 106 1 4 1174 1027 238 175 169 chr5 77240329 77240602 -75296657 - Lx8 LINE L1 -682 6787 6476 4 1174 619 180 27 9 chr5 77240602 77240714 -75296545 - Lx8 LINE L1 -480 6174 6061 4 1174 1504 71 85 5 chr5 77240679 77240891 -75296368 + Lx LINE L1 6160 6388 -266 4 1174 244 85 74 0 chr5 77240996 77241047 -75296212 - B1_Mur3 SINE Alu -7 143 87 4 1174 455 104 336 9 chr5 77241038 77241145 -75296114 - B2_Mm2 SINE B2 -7 188 47 4 1174 779 145 145 0 chr5 77241196 77241278 -75295981 - B2_Mm1t SINE B2 -26 167 75 4 1174 2635 77 28 39 chr5 77241278 77241641 -75295618 - RLTR10D LTR ERVK 0 359 1 4 1174 779 145 145 0 chr5 77241641 77241703 -75295556 - B2_Mm1t SINE B2 -119 74 3 4 1174 1155 178 25 10 chr5 77241743 77241947 -75295312 + B3 SINE B2 6 212 -4 4 1174 247 345 133 43 chr5 77242677 77242865 -75294394 - MIRb SINE MIR -30 238 34 4 1174 212 271 78 92 chr5 77242934 77243076 -75294183 + MIRb SINE MIR 18 157 -111 4 1174 1402 138 4 9 chr5 77243237 77243463 -75293796 - URR1B DNA MER1_type 0 225 1 4 1174 218 250 0 37 chr5 77243922 77243976 -75293283 + ID4 SINE ID 19 70 -13 4 1174 261 0 0 0 chr5 77244703 77244732 -75292527 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1174 996 269 59 59 chr5 77245380 77245755 -75291504 - MTEb LTR MaLR -4 375 1 4 1174 496 116 139 0 chr5 77246189 77246275 -75290984 + B3 SINE B2 1 98 -118 4 1174 1094 45 0 0 chr5 77247332 77247465 -75289794 - B2_Mm2 SINE B2 -62 133 1 4 1174 189 0 0 0 chr5 77247558 77247579 -75289680 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1174 223 200 0 0 chr5 77247619 77247654 -75289605 + ID2 SINE ID 11 45 -38 4 1174 306 203 22 190 chr5 77247783 77247891 -75289368 + B1F SINE Alu 20 111 -6 4 1174 337 266 5 48 chr5 77247893 77248079 -75289180 + GA-rich Low_complexity Low_complexity 1 178 0 4 1174 253 277 18 65 chr5 77248020 77248190 -75289069 + G-rich Low_complexity Low_complexity 3 164 0 4 1174 1097 96 0 0 chr5 77248469 77248615 -75288644 - B1_Mus1 SINE Alu 0 148 3 4 1174 195 372 25 25 chr5 77249002 77249082 -75288177 - MIR SINE MIR -181 81 2 4 1174 1578 177 154 15 chr5 77249655 77250045 -75287214 + Lx9 LINE L1 7201 7644 0 4 1174 1833 154 19 23 chr5 77250242 77250564 -75286695 - ORR1B1 LTR MaLR -61 333 4 4 1174 270 0 0 0 chr5 77250633 77250663 -75286596 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1174 1230 48 0 0 chr5 77250680 77250827 -75286432 - B1_Mus1 SINE Alu 0 148 2 4 1174 245 256 0 18 chr5 77252110 77252273 -75284986 + CT-rich Low_complexity Low_complexity 2 161 0 4 1174 257 250 162 8 chr5 77253551 77253668 -75283591 + B1F2 SINE Alu 15 149 0 4 1174 517 250 0 41 chr5 77254381 77254502 -75282757 + B1F1 SINE Alu 32 147 -2 4 1174 235 289 13 38 chr5 77254623 77254702 -75282557 + MER103 DNA DNA 67 143 -23 5 1174 192 234 152 59 chr5 77254826 77254944 -75282315 - MIRc SINE MIR -112 156 28 5 1174 271 437 0 0 chr5 77255299 77255402 -75281857 + PB1D10 SINE Alu 1 103 -14 5 1174 480 247 56 42 chr5 77255702 77255899 -75281360 + L1M4 LINE L1 5161 5360 -1084 5 1174 779 211 46 72 chr5 77256061 77256255 -75281004 + B3A SINE B2 1 189 -6 5 1174 270 327 100 83 chr5 77256561 77256741 -75280518 - ORR1E LTR MaLR -125 234 52 5 1174 225 358 25 0 chr5 77256836 77256917 -75280342 + MIRm SINE MIR 193 275 -1 5 1174 181 333 43 54 chr5 77257384 77257476 -75279783 + L3b LINE CR1 168 258 -224 5 1174 237 65 0 0 chr5 77258040 77258071 -75279188 + (GA)n Simple_repeat Simple_repeat 2 32 0 5 1174 1021 184 17 0 chr5 77258374 77258548 -75278711 + B3 SINE B2 1 177 -39 5 1174 739 98 0 24 chr5 77259344 77259470 -75277789 + Lx4A LINE L1 6935 7057 -1 5 1174 470 219 7 0 chr5 77259731 77259877 -75277382 + CT-rich Low_complexity Low_complexity 2 148 0 5 1174 1814 144 24 63 chr5 77260029 77260362 -75276897 + ORR1A4 LTR MaLR 2 321 -8 5 1174 2061 127 7 0 chr5 77260366 77260674 -75276585 + ORR1A4-int LTR MaLR 1 310 -1653 5 1174 410 82 33 0 chr5 77260672 77260733 -75276526 + ORR1A4 LTR MaLR 259 321 -8 5 1174 654 178 25 0 chr5 77260749 77260867 -75276392 - B1F2 SINE Alu 0 149 29 5 1174 588 253 123 9 chr5 77260867 77261094 -75276165 + L1MB4 LINE L1 5928 6180 0 5 1174 401 170 157 11 chr5 77262302 77262391 -75274868 - ID_B1 SINE B4 -19 205 104 5 1174 324 223 168 11 chr5 77262307 77262402 -75274857 - B1F SINE Alu -27 122 13 5 1174 1183 277 47 40 chr5 77262731 77263162 -75274097 + Lx7 LINE L1 6868 7315 -381 5 1174 1474 49 22 0 chr5 77263162 77263345 -75273914 - B2_Mm2 SINE B2 -6 189 3 5 1174 1183 274 47 40 chr5 77263345 77263369 -75273890 + Lx7 LINE L1 7316 7334 -362 5 1174 189 0 0 0 chr5 77263398 77263419 -75273840 + (TTA)n Simple_repeat Simple_repeat 2 22 0 5 1174 180 0 0 0 chr5 77263562 77263582 -75273677 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1174 627 375 106 57 chr5 77263583 77263866 -75273393 + L1MEg LINE L1 299 576 -5666 5 1174 1710 31 0 0 chr5 77263866 77264059 -75273200 + B2_Mm1a SINE B2 1 193 0 5 1174 627 375 106 57 chr5 77264059 77264528 -75272731 + L1MEg LINE L1 577 1088 -5154 5 1174 394 260 146 38 chr5 77264587 77264827 -75272432 + L1MEg LINE L1 1098 1363 -4879 5 1174 405 306 67 25 chr5 77265182 77265497 -75271762 + L1MEg LINE L1 4260 4587 -1559 5 1174 716 33 0 11 chr5 77265532 77265624 -75271635 + (GGGA)n Simple_repeat Simple_repeat 1 91 0 5 1174 3491 142 9 71 chr5 77265625 77266260 -75270999 - RLTR17 LTR ERVK 0 692 97 5 1174 278 324 45 9 chr5 77266492 77266604 -75270655 - PB1D9 SINE Alu -2 118 3 5 1174 189 245 117 45 chr5 77266703 77266814 -75270445 + MIRb SINE MIR 118 236 -32 5 1174 698 299 54 11 chr5 77267180 77267457 -75269802 + B4A SINE B4 2 290 -2 5 1174 41 0 0 0 chr5 77267478 77267519 -75269740 + AT_rich Low_complexity Low_complexity 1 41 0 5 1174 1076 136 6 17 chr5 77267693 77267724 -75269535 - B2_Mm2 SINE B2 -18 177 148 5 1174 180 0 0 0 chr5 77267724 77267744 -75269515 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1174 1076 136 6 17 chr5 77267744 77267891 -75269368 - B2_Mm2 SINE B2 -48 147 1 5 1174 181 283 100 0 chr5 77267998 77268058 -75269201 + L2c LINE L2 3286 3351 -36 5 1174 984 137 79 79 chr5 77270591 77270805 -75266454 + URR1A DNA MER1_type 9 222 -4 5 1174 489 215 29 139 chr5 77270645 77270883 -75266376 - CYRA11_Mm Unknown Y-chromosome -298 319 108 5 1174 216 0 0 0 chr5 77271658 77271682 -75265577 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1174 1032 90 7 27 chr5 77271682 77271694 -75265565 - B1_Mus1 SINE Alu 0 148 140 5 1174 231 36 0 0 chr5 77271694 77271722 -75265537 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1174 1032 90 7 27 chr5 77271722 77271858 -75265401 - B1_Mus1 SINE Alu -9 139 3 5 1174 183 42 0 0 chr5 77272411 77272435 -75264824 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1174 202 355 68 43 chr5 77272975 77273137 -75264122 + MIR3 SINE MIR 20 185 -23 5 1174 518 214 72 14 chr5 77275113 77275272 -75261987 + L1MA6 LINE L1 6021 6187 -113 5 1174 396 0 0 0 chr5 77275272 77275316 -75261943 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 5 1174 499 286 86 16 chr5 77275316 77275412 -75261847 + L1MA6 LINE L1 6188 6293 -7 5 1174 355 299 0 10 chr5 77275419 77275517 -75261742 + ID_B1 SINE B4 80 176 -48 5 1174 438 274 0 9 chr5 77275432 77275539 -75261720 + PB1D10 SINE Alu 12 117 0 5 1174 935 259 138 40 chr5 77276480 77276858 -75260401 - MTD LTR MaLR 0 419 5 5 1174 234 0 0 0 chr5 77279426 77279452 -75257807 + (G)n Simple_repeat Simple_repeat 1 26 0 5 1174 225 0 0 0 chr5 77279513 77279538 -75257721 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1174 360 324 9 89 chr5 77279541 77279653 -75257606 - RSINE1 SINE B4 -20 145 43 5 1174 665 195 0 17 chr5 77280837 77281067 -75256192 + (TG)n Simple_repeat Simple_repeat 1 225 0 5 1174 550 208 6 11 chr5 77281082 77281262 -75255997 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1174 301 175 0 19 chr5 77281277 77281382 -75255877 + (TG)n Simple_repeat Simple_repeat 1 103 0 5 1174 352 315 103 18 chr5 77281468 77281633 -75255626 - B4 SINE B4 -71 221 43 5 1174 22 0 0 0 chr5 77281961 77281983 -75255276 + GC_rich Low_complexity Low_complexity 1 22 0 5 1174 1324 79 11 6 chr5 77282082 77282260 -75254999 + B2_Mm1t SINE B2 1 179 -14 5 1174 382 111 170 31 chr5 77282307 77282418 -75254841 + B2_Mm2 SINE B2 47 191 -2 5 1174 647 200 266 17 chr5 77282959 77283132 -75254127 - B3 SINE B2 0 216 1 5 1174 612 206 59 30 chr5 77283137 77283272 -75253987 - ID_B1 SINE B4 -2 222 84 5 1174 240 282 63 52 chr5 77283464 77283655 -75253604 - Lx8 LINE L1 -4 7469 7277 5 1174 269 82 0 20 chr5 77283796 77283846 -75253413 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 5 1174 234 0 0 0 chr5 77284488 77284514 -75252745 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1174 472 224 90 14 chr5 77284699 77284844 -75252415 - Tigger7 DNA MER2_type -75 2416 2261 5 1174 1029 244 196 6 chr5 77284905 77285222 -75252037 - MTEb LTR MaLR 0 379 3 5 1174 351 154 0 0 chr5 77285627 77285692 -75251567 + GA-rich Low_complexity Low_complexity 1 65 0 5 1174 237 243 38 94 chr5 77285864 77286097 -75251162 + (CGAGG)n Simple_repeat Simple_repeat 1 219 0 5 1174 720 227 43 0 chr5 77289137 77289278 -75247981 + B3 SINE B2 1 147 -69 5 1174 351 0 0 0 chr5 77289291 77289330 -75247929 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1174 689 159 0 0 chr5 77290103 77290216 -75247043 + B1_Mus2 SINE Alu 34 146 -1 5 1174 198 0 0 0 chr5 77290218 77290240 -75247019 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1174 3578 186 31 58 chr5 77290379 77291258 -75246001 - RLTR13A LTR ERVK 0 855 1 5 1174 1629 149 17 33 chr5 77291714 77292013 -75245246 - RLTR28 LTR ERVL -16 508 215 5 1174 1206 68 0 0 chr5 77292013 77292160 -75245099 + B1_Mus2 SINE Alu 1 147 0 5 1174 1220 147 50 18 chr5 77292178 77292400 -75244859 - RLTR28 LTR ERVL -295 229 1 5 1174 482 223 11 0 chr5 77292406 77292500 -75244759 + B1_Mur1 SINE Alu 19 113 -36 5 1174 265 238 16 0 chr5 77292503 77292566 -75244693 + B3A SINE B2 14 77 -121 5 1174 183 80 0 0 chr5 77292582 77292607 -75244652 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 5 1174 281 315 84 8 chr5 77292750 77292881 -75244378 - Charlie7 DNA MER1_type -1924 688 548 5 1174 836 188 0 26 chr5 77293122 77293275 -75243984 + B1_Mur2 SINE Alu 1 149 0 5 1174 312 119 0 0 chr5 77293329 77293388 -75243871 + (T)n Simple_repeat Simple_repeat 1 59 0 5 1174 1260 34 0 0 chr5 77293392 77293539 -75243720 - B1_Mus1 SINE Alu 0 148 2 5 1174 705 257 27 43 chr5 77293654 77293841 -75243418 + B3A SINE B2 1 184 -14 5 1174 261 293 134 25 chr5 77293866 77293985 -75243274 - Charlie7a DNA MER1_type -139 133 2 5 1174 927 291 204 22 chr5 77295460 77295941 -75241318 + Tigger7 DNA MER2_type 1 543 -7 5 1174 769 129 17 17 chr5 77296602 77296720 -75240539 - PB1D9 SINE Alu -1 119 2 5 1174 324 327 59 0 chr5 77296723 77296824 -75240435 - MER63B DNA AcHobo -23 413 307 5 1174 527 0 16 0 chr5 77296909 77296972 -75240287 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 5 1174 594 292 92 61 chr5 77297821 77298278 -75238981 - RLTR11B LTR ERVK -46 481 2 5 1174 465 211 86 9 chr5 77298760 77298865 -75238394 + PB1D7 SINE Alu 1 113 -7 5 1174 1107 89 0 14 chr5 77298948 77299096 -75238163 - B1_Mus1 SINE Alu 0 148 3 5 1174 380 222 159 22 chr5 77299230 77299368 -75237891 + L1MA8 LINE L1 5995 6151 -140 5 1174 351 0 0 0 chr5 77299405 77299444 -75237815 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1174 23 0 0 0 chr5 77299754 77299777 -75237482 + AT_rich Low_complexity Low_complexity 1 23 0 5 1174 679 177 98 15 chr5 77301701 77301833 -75235426 + B1_Mur1 SINE Alu 6 148 -1 5 1174 380 219 0 0 chr5 77303042 77303106 -75234153 + ID4_ SINE ID 14 77 -6 5 1174 527 244 144 18 chr5 77303195 77303362 -75233897 + B3 SINE B2 5 192 -24 5 1174 613 311 93 84 chr5 77303612 77304024 -75233235 - MLT2B1 LTR ERVL -51 469 54 5 1174 238 287 125 21 chr5 77304024 77304120 -75233139 - MLT1A1 LTR MaLR 0 408 303 5 1174 2524 161 26 12 chr5 77304419 77304834 -75232425 - MTC LTR MaLR 0 421 1 5 1174 225 153 16 48 chr5 77305799 77305861 -75231398 + A-rich Low_complexity Low_complexity 2 61 0 5 1174 1038 102 138 0 chr5 77305914 77306054 -75231205 + B2_Mm2 SINE B2 1 153 -42 5 1174 459 0 0 0 chr5 77306054 77306105 -75231154 + (CATA)n Simple_repeat Simple_repeat 4 54 0 5 1174 1038 102 138 0 chr5 77306105 77306131 -75231128 + B2_Mm2 SINE B2 154 189 -6 5 1174 673 154 113 8 chr5 77306147 77306271 -75230988 + B1_Mur2 SINE Alu 13 149 0 5 1174 270 0 0 0 chr5 77306273 77306303 -75230956 + (TA)n Simple_repeat Simple_repeat 1 30 0 5 1174 351 65 0 0 chr5 77306303 77306348 -75230911 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1174 441 0 0 0 chr5 77306358 77306407 -75230852 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1174 220 323 97 0 chr5 77306419 77306481 -75230778 + ID4 SINE ID 2 69 -14 6 1174 615 274 24 67 chr5 77306765 77306929 -75230330 - RSINE1 SINE B4 0 165 9 6 1174 342 248 118 17 chr5 77307092 77307211 -75230048 + B3 SINE B2 76 206 -10 6 1174 349 179 14 29 chr5 77307758 77307827 -75229432 - B1F2 SINE Alu -79 70 3 6 1174 387 0 0 0 chr5 77307861 77307904 -75229355 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1174 258 295 42 10 chr5 77308067 77308163 -75229096 - L1M5 LINE L1 -419 5705 5607 6 1174 336 188 696 0 chr5 77308246 77308364 -75228895 - ID_B1 SINE B4 -24 200 1 6 1174 196 350 0 62 chr5 77309552 77309596 -75227663 - MIR SINE MIR 0 262 222 6 1174 727 216 94 10 chr5 77309596 77309797 -75227462 - ID_B1 SINE B4 -4 220 3 6 1174 196 350 0 62 chr5 77309797 77309816 -75227443 - MIR SINE MIR -41 221 203 6 1174 333 0 0 0 chr5 77310031 77310068 -75227191 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1174 1177 37 0 0 chr5 77310068 77310203 -75227056 + B1_Mus1 SINE Alu 1 135 -13 6 1174 1132 313 43 43 chr5 77310527 77310965 -75226294 + MLT1F1 LTR MaLR 6 443 -126 6 1174 268 341 81 0 chr5 77311024 77311147 -75226112 - MIRc SINE MIR -110 158 26 6 1174 405 0 0 0 chr5 77311211 77311256 -75226003 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1174 810 192 7 0 chr5 77312530 77312676 -75224583 - B1_Mus1 SINE Alu -1 147 1 6 1174 1186 69 0 0 chr5 77313608 77313752 -75223507 + B1_Mus1 SINE Alu 5 148 0 6 1174 216 0 0 0 chr5 77313752 77313776 -75223483 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1174 270 295 113 21 chr5 77313776 77313918 -75223341 - RSINE1 SINE B4 -9 156 2 6 1174 422 304 18 9 chr5 77313921 77314034 -75223225 - PB1D10 SINE Alu 0 117 4 6 1174 275 338 66 40 chr5 77314034 77314075 -75223184 - B4A SINE B4 -196 96 52 6 1174 221 318 0 0 chr5 77314052 77314118 -75223141 + B1F SINE Alu 79 144 -5 6 1174 681 284 127 36 chr5 77314169 77314610 -75222649 + MLT2B1 LTR ERVL 1 567 0 6 1174 388 241 202 60 chr5 77314623 77314954 -75222305 + MTEa LTR MaLR 1 378 -1 6 1174 792 212 15 49 chr5 77315524 77315727 -75221532 - B3A SINE B2 -1 197 2 6 1174 380 248 26 17 chr5 77315754 77315869 -75221390 + PB1D10 SINE Alu 1 116 -1 6 1174 397 219 114 0 chr5 77315940 77316045 -75221214 - PB1D10 SINE Alu 0 117 1 6 1174 1225 42 0 0 chr5 77316529 77316672 -75220587 + B1_Mus1 SINE Alu 1 143 -5 6 1174 181 53 51 26 chr5 77316677 77316716 -75220543 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 6 1174 25 65 0 0 chr5 77316767 77316813 -75220446 + AT_rich Low_complexity Low_complexity 1 46 0 6 1174 28 0 0 0 chr5 77317948 77317976 -75219283 + AT_rich Low_complexity Low_complexity 1 28 0 6 1174 628 271 57 0 chr5 77317980 77318157 -75219102 - B3A SINE B2 -11 187 1 6 1174 248 215 61 15 chr5 77318213 77318279 -75218980 - L1M4 LINE L1 -326 5853 5785 6 1174 414 247 137 46 chr5 77318287 77318593 -75218666 - L1M4 LINE L1 -1487 4659 4326 6 1174 185 264 14 0 chr5 77318684 77318756 -75218503 + CT-rich Low_complexity Low_complexity 3 75 0 6 1174 588 237 184 0 chr5 77318905 77319057 -75218202 - B3A SINE B2 -18 180 1 6 1174 435 239 205 6 chr5 77319232 77319388 -75217871 - B3A SINE B2 -7 191 5 6 1174 890 224 24 0 chr5 77319459 77319629 -75217630 - B3 SINE B2 -6 210 37 6 1174 267 303 159 27 chr5 77319631 77319823 -75217436 + Lx7 LINE L1 7067 7292 -181 6 1174 305 82 20 0 chr5 77319870 77319919 -75217340 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 6 1174 986 251 36 22 chr5 77319920 77320197 -75217062 - B4A SINE B4 -11 281 1 6 1174 241 203 51 0 chr5 77320215 77320274 -75216985 - B1F SINE Alu -1 148 87 6 1174 679 203 142 42 chr5 77320888 77321078 -75216181 + B3 SINE B2 1 209 -7 6 1174 513 165 0 0 chr5 77321102 77321199 -75216060 + GA-rich Low_complexity Low_complexity 2 98 0 6 1174 935 149 7 13 chr5 77321330 77321480 -75215779 + B1_Mur2 SINE Alu 1 149 0 6 1174 237 378 0 0 chr5 77321519 77321601 -75215658 + MLT2F LTR ERVL 1 82 -581 6 1174 611 250 0 41 chr5 77321630 77321776 -75215483 - B1F1 SINE Alu 0 149 10 6 1174 329 195 209 102 chr5 77321951 77322128 -75215131 + B3A SINE B2 3 198 0 6 1174 486 0 0 0 chr5 77322143 77322197 -75215062 + (CAG)n Simple_repeat Simple_repeat 1 54 0 6 1174 378 0 0 0 chr5 77322433 77322475 -75214784 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1174 328 304 45 70 chr5 77322477 77322633 -75214626 - B3A SINE B2 -45 153 2 6 1174 427 230 11 0 chr5 77322644 77322731 -75214528 - PB1D10 SINE Alu -8 109 22 6 1174 732 102 67 17 chr5 77322927 77323047 -75214212 + B1_Mus2 SINE Alu 19 144 -3 6 1174 822 174 214 0 chr5 77323063 77323241 -75214018 + B3 SINE B2 1 216 0 6 1174 216 182 143 18 chr5 77323435 77323491 -75213768 - B1_Mur1 SINE Alu 0 149 87 6 1174 253 266 0 15 chr5 77324191 77324256 -75213003 + RMER6B LTR ERVK 367 430 -31 6 1174 1247 55 0 0 chr5 77324274 77324420 -75212839 + B1_Mm SINE Alu 2 147 0 6 1174 1362 79 11 0 chr5 77324458 77324635 -75212624 + B2_Mm1t SINE B2 1 179 -14 6 1174 404 180 95 43 chr5 77324648 77324764 -75212495 + B2_Mm2 SINE B2 47 168 -27 6 1174 467 265 30 22 chr5 77324780 77324915 -75212344 + B1F SINE Alu 10 145 -4 6 1174 1002 92 0 0 chr5 77324973 77325125 -75212134 + (CA)n Simple_repeat Simple_repeat 1 152 0 6 1174 924 131 14 14 chr5 77325751 77325898 -75211361 + B1_Mus1 SINE Alu 1 147 -1 6 1174 1220 50 44 0 chr5 77326656 77326816 -75210443 + B2_Mm2 SINE B2 1 167 -28 6 1174 422 226 126 24 chr5 77326859 77326986 -75210273 - B1F1 SINE Alu -8 141 2 6 1174 1342 161 85 93 chr5 77327253 77327617 -75209642 + RMER16 LTR ERVK 1 533 0 6 1174 981 144 0 14 chr5 77327661 77327809 -75209450 + B1_Mur2 SINE Alu 4 149 0 6 1174 230 131 85 21 chr5 77327838 77327885 -75209374 + ID_B1 SINE B4 142 191 -33 6 1174 512 295 57 77 chr5 77328163 77328279 -75208980 - MER20 DNA MER1_type -14 205 82 6 1174 1009 78 35 0 chr5 77328279 77328420 -75208839 - B1_Mm SINE Alu 0 147 2 6 1174 512 295 57 77 chr5 77328420 77328512 -75208747 - MER20 DNA MER1_type -138 81 1 6 1174 720 191 49 7 chr5 77328749 77328891 -75208368 + B1_Mur2 SINE Alu 2 149 0 6 1174 696 276 34 10 chr5 77329415 77329620 -75207639 - B3 SINE B2 -6 210 1 6 1174 428 319 85 65 chr5 77329835 77330036 -75207223 + MER20 DNA MER1_type 3 215 -4 6 1174 264 267 80 0 chr5 77330496 77330571 -75206688 + ID4_ SINE ID 2 82 -1 6 1174 250 254 127 0 chr5 77331292 77331363 -75205896 + ID4 SINE ID 4 83 0 6 1174 934 258 50 18 chr5 77331571 77331851 -75205408 + RMER5 LTR ERV1 230 518 -16 6 1174 194 0 39 0 chr5 77332056 77332082 -75205177 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 6 1174 649 171 138 0 chr5 77332082 77332205 -75205054 + B1_Mur3 SINE Alu 6 145 -4 6 1175 1111 68 7 33 chr5 77332695 77332846 -75204413 + B1_Mus2 SINE Alu 1 147 0 6 1175 1698 31 0 0 chr5 77332846 77333039 -75204220 + B2_Mm1a SINE B2 1 193 0 6 1175 294 143 0 0 chr5 77333039 77333088 -75204171 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1175 606 254 75 15 chr5 77333221 77333421 -75203838 + B3 SINE B2 5 216 0 6 1175 1184 48 14 0 chr5 77333562 77333707 -75203552 - B1_Mm SINE Alu 0 147 1 6 1175 508 260 46 7 chr5 77333907 77334058 -75203201 + RSINE1 SINE B4 3 159 -6 6 1175 198 103 0 0 chr5 77334068 77334097 -75203162 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1175 416 265 52 35 chr5 77334683 77334855 -75202404 - B3 SINE B2 -41 175 1 6 1175 1785 157 79 77 chr5 77335344 77335773 -75201486 - RLTR23 LTR ERV1 0 430 1 6 1175 582 173 271 7 chr5 77335862 77336042 -75201217 - MTD LTR MaLR -14 405 196 6 1175 629 245 93 19 chr5 77336051 77336213 -75201046 - B3 SINE B2 -7 209 36 6 1175 554 177 289 7 chr5 77336212 77336354 -75200905 - MTD LTR MaLR -237 182 1 6 1175 1217 102 10 36 chr5 77336385 77336579 -75200680 - B2_Mm1t SINE B2 -3 190 2 6 1175 340 217 14 14 chr5 77336919 77336989 -75200270 - PB1D10 SINE Alu -35 82 13 6 1175 2371 60 69 3 chr5 77337404 77337739 -75199520 + MTB LTR MaLR 44 400 0 6 1175 301 292 54 54 chr5 77337757 77337869 -75199390 - HAL1 LINE L1 -1570 937 826 6 1175 2231 165 120 35 chr5 77337879 77338370 -75198889 - RMER16 LTR ERVK 0 533 1 6 1175 1436 52 40 0 chr5 77338378 77338552 -75198707 - B2_Mm2 SINE B2 -14 181 1 6 1175 285 29 0 0 chr5 77338596 77338630 -75198629 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 6 1175 1043 55 6 88 chr5 77338630 77338790 -75198469 - B1_Mm SINE Alu 0 147 1 6 1175 2124 145 83 10 chr5 77339141 77339537 -75197722 + RMER6B LTR ERVK 34 458 -3 6 1175 1252 150 271 10 chr5 77339726 77340036 -75197223 - ORR1B1 LTR MaLR 0 394 4 6 1175 278 290 68 29 chr5 77340292 77340395 -75196864 + LTR40c LTR ERVL 31 137 -328 6 1175 1706 26 0 0 chr5 77340651 77340843 -75196416 - B2_Mm1a SINE B2 0 193 2 6 1175 955 17 0 0 chr5 77341567 77341682 -75195577 + B1_Mus2 SINE Alu 33 147 0 6 1175 271 275 191 21 chr5 77341697 77341838 -75195421 - MLT2C2 LTR ERVL -65 399 235 6 1175 21 0 0 0 chr5 77342952 77342973 -75194286 + AT_rich Low_complexity Low_complexity 1 21 0 7 1175 270 145 210 0 chr5 77343696 77343758 -75193501 - PB1D10 SINE Alu -2 115 41 7 1175 227 293 23 47 chr5 77344523 77344609 -75192650 + PB1D10 SINE Alu 1 84 -33 7 1175 294 311 113 8 chr5 77345780 77345913 -75191346 - Tigger1 DNA MER2_type -7 2411 2265 7 1175 408 110 137 0 chr5 77345918 77345991 -75191268 + MTC LTR MaLR 4 86 -335 7 1175 458 253 42 54 chr5 77345991 77346149 -75191110 + Lx4A LINE L1 6894 7050 -8 7 1175 213 39 0 0 chr5 77346149 77346175 -75191084 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 7 1175 1775 107 138 13 chr5 77346206 77346518 -75190741 + MTC LTR MaLR 71 421 0 7 1175 279 241 50 12 chr5 77346592 77346672 -75190587 - PB1D10 SINE Alu -2 115 33 7 1175 1150 64 0 7 chr5 77346742 77346883 -75190376 + B1_Mm SINE Alu 1 140 -7 7 1175 212 0 0 35 chr5 77346883 77346912 -75190347 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 7 1175 382 294 1 0 chr5 77347468 77347568 -75189691 - B1F1 SINE Alu -11 109 9 7 1175 1140 102 0 0 chr5 77348233 77348380 -75188879 + B1_Mus1 SINE Alu 2 148 0 7 1175 468 264 105 26 chr5 77349265 77349417 -75187842 + RSINE1 SINE B4 2 165 0 7 1175 309 223 160 28 chr5 77349456 77349479 -75187780 - B3A SINE B2 -78 120 1 7 1175 483 205 0 0 chr5 77349479 77349562 -75187697 - B4A SINE B4 -209 83 1 7 1175 705 217 17 0 chr5 77349591 77349711 -75187548 + RSINE1 SINE B4 4 125 -40 7 1175 299 301 46 27 chr5 77349776 77349915 -75187344 + PB1D7 SINE Alu 7 148 -1 7 1175 314 208 0 172 chr5 77350055 77350183 -75187076 + MT2B LTR ERVL 151 256 -345 7 1175 666 121 0 53 chr5 77350073 77350186 -75187073 + B1_Mur4 SINE Alu 1 107 -43 7 1175 306 243 17 112 chr5 77350082 77350198 -75187061 + B4A SINE B4 94 198 -94 7 1175 183 292 0 20 chr5 77350507 77350556 -75186703 + L2 LINE L2 247 294 -3125 7 1175 308 200 150 0 chr5 77350852 77350932 -75186327 + B4A SINE B4 26 117 -175 7 1175 674 222 80 23 chr5 77352371 77352546 -75184713 + B3 SINE B2 2 186 -30 7 1175 456 212 158 9 chr5 77353088 77353202 -75184057 + B1F SINE Alu 19 149 0 7 1175 242 312 0 49 chr5 77353294 77353375 -75183884 + ID4_ SINE ID 7 83 0 7 1175 524 184 29 10 chr5 77353415 77353519 -75183740 - PB1D9 SINE Alu -13 107 2 7 1175 1110 335 104 12 chr5 77353701 77354267 -75182992 + MER21B LTR ERV1 39 656 -207 7 1175 268 216 82 102 chr5 77355051 77355149 -75182110 - PB1D9 SINE Alu -20 100 5 7 1175 701 38 274 0 chr5 77355154 77355260 -75181999 - B1_Mus1 SINE Alu -12 136 2 7 1175 273 290 0 101 chr5 77355625 77355744 -75181515 - PB1D9 SINE Alu -12 108 2 7 1175 214 369 11 35 chr5 77356041 77356128 -75181131 - MIR SINE MIR -31 231 147 7 1175 220 309 144 0 chr5 77356355 77356452 -75180807 - PB1D10 SINE Alu -6 111 1 7 1175 722 188 8 0 chr5 77356530 77356658 -75180601 - B1_Mur3 SINE Alu -19 130 2 7 1175 846 232 14 112 chr5 77356731 77356954 -75180305 - B3 SINE B2 -4 212 12 7 1175 180 83 20 40 chr5 77357870 77357920 -75179339 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 7 1175 1191 61 0 0 chr5 77359198 77359346 -75177913 + B1_Mus1 SINE Alu 1 148 0 7 1175 189 0 0 0 chr5 77359358 77359379 -75177880 + (GA)n Simple_repeat Simple_repeat 2 22 0 7 1175 5675 47 65 0 chr5 77359540 77360237 -75177022 + RLTR4_Mm LTR ERV1 1 742 0 7 1175 69689 10 2 0 chr5 77360237 77367825 -75169434 + RLTR4_MM-int LTR ERV1 1 7601 0 7 1175 5675 47 65 0 chr5 77367825 77368522 -75168737 + RLTR4_Mm LTR ERV1 1 742 0 7 1175 326 252 88 53 chr5 77369360 77369473 -75167786 + MLT1A LTR MaLR 22 138 -236 7 1175 964 31 139 0 chr5 77370045 77370174 -75167085 + B1_Mm SINE Alu 1 147 0 7 1175 276 53 0 0 chr5 77370177 77370215 -75167044 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1175 319 206 63 0 chr5 77370464 77370527 -75166732 - L1M3 LINE L1 -419 5764 5698 7 1175 310 238 34 45 chr5 77371639 77371727 -75165532 - ID_B1 SINE B4 -4 220 134 7 1175 740 260 181 25 chr5 77371752 77372028 -75165231 - MER82 DNA MER2_type -247 406 88 7 1175 549 193 9 18 chr5 77372053 77372164 -75165095 + PB1D9 SINE Alu 2 111 -9 7 1175 389 195 126 0 chr5 77372359 77372446 -75164813 + B1_Mus2 SINE Alu 18 115 -32 7 1175 21 0 0 0 chr5 77373421 77373442 -75163817 + AT_rich Low_complexity Low_complexity 1 21 0 7 1175 215 286 29 48 chr5 77374446 77374549 -75162710 + B1F1 SINE Alu 29 129 -20 7 1175 756 240 135 45 chr5 77374595 77374861 -75162398 - MER2 DNA MER2_type -55 290 1 7 1175 254 253 89 0 chr5 77374955 77375034 -75162225 + PB1D10 SINE Alu 32 117 0 7 1175 358 317 177 34 chr5 77375171 77375299 -75161960 - L1ME3A LINE L1 -265 5908 5776 7 1175 243 0 0 0 chr5 77375299 77375326 -75161933 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1175 358 317 177 34 chr5 77375326 77375491 -75161768 - L1ME3A LINE L1 -398 5775 5573 7 1175 21 0 0 0 chr5 77376126 77376147 -75161112 + AT_rich Low_complexity Low_complexity 1 21 0 7 1175 618 210 27 20 chr5 77376795 77376941 -75160318 - B1_Mur3 SINE Alu -1 148 2 7 1175 961 117 7 0 chr5 77378078 77378223 -75159036 + B1_Mus1 SINE Alu 3 148 0 7 1175 370 320 36 66 chr5 77378079 77378246 -75159013 + B4A SINE B4 88 249 -43 7 1175 838 48 153 0 chr5 77378511 77378635 -75158624 + B1_Mus1 SINE Alu 5 147 -1 7 1175 373 168 136 82 chr5 77378702 77378812 -75158447 - B1_Mur1 SINE Alu -1 148 33 7 1175 864 100 0 37 chr5 77378940 77379075 -75158184 - B1_Mus1 SINE Alu -9 139 10 7 1175 421 349 33 13 chr5 77381643 77381794 -75155465 - B3 SINE B2 -62 154 1 7 1175 194 0 0 37 chr5 77382415 77382442 -75154817 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1175 1111 83 0 14 chr5 77382442 77382578 -75154681 - B1_Mm SINE Alu -10 137 2 7 1175 1484 63 26 0 chr5 77382581 77382770 -75154489 - B2_Mm2 SINE B2 -1 194 1 7 1175 260 348 26 35 chr5 77383363 77383479 -75153780 + L2c LINE L2 3238 3352 -35 7 1175 3435 151 115 13 chr5 77383506 77384192 -75153067 + RMER6A LTR ERVK 1 756 0 7 1175 979 60 83 0 chr5 77384310 77384443 -75152816 - B1_Mus1 SINE Alu -3 145 2 7 1175 361 269 115 0 chr5 77384491 77384621 -75152638 + B1_Mm SINE Alu 2 146 -1 7 1175 1149 56 28 7 chr5 77385185 77385329 -75151930 - B1_Mm SINE Alu 0 147 1 7 1175 213 391 31 0 chr5 77386033 77386097 -75151162 + ID4_ SINE ID 4 69 -14 7 1175 560 246 135 14 chr5 77386127 77386275 -75150984 - ORR1D1 LTR MaLR -66 308 143 7 1175 1341 153 164 0 chr5 77386263 77386538 -75150721 - ORR1A2 LTR MaLR -6 321 2 7 1175 498 232 113 6 chr5 77386538 77386678 -75150581 - ORR1D1 LTR MaLR -210 164 10 7 1175 212 288 57 41 chr5 77386807 77386930 -75150329 - L3 LINE CR1 -208 4281 4157 7 1175 272 317 95 38 chr5 77386978 77387083 -75150176 - B3 SINE B2 -86 130 20 7 1175 512 273 28 101 chr5 77387528 77387674 -75149585 - B3A SINE B2 -22 176 43 7 1175 1011 68 0 0 chr5 77387674 77387806 -75149453 - B1_Mus2 SINE Alu -14 133 2 7 1175 512 273 28 101 chr5 77387806 77387838 -75149421 - B3A SINE B2 -156 42 11 7 1175 283 238 18 15 chr5 77387876 77387963 -75149296 + B4 SINE B4 10 99 -66 7 1175 200 148 0 85 chr5 77388056 77388071 -75149188 + polypurine Low_complexity Low_complexity 3 15 0 7 1175 1253 21 14 0 chr5 77388071 77388216 -75149043 + B1_Mus2 SINE Alu 1 147 0 7 1175 200 148 0 85 chr5 77388216 77388259 -75149000 + polypurine Low_complexity Low_complexity 16 55 0 7 1175 379 246 167 38 chr5 77388802 77388988 -75148271 + B3 SINE B2 2 211 -5 7 1175 251 251 67 6 chr5 77388994 77389066 -75148193 + PB1D7 SINE Alu 40 113 -7 7 1175 189 0 0 0 chr5 77389167 77389188 -75148071 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1175 710 85 17 25 chr5 77389188 77389299 -75147960 - B1_Mus1 SINE Alu -9 139 28 7 1175 219 107 52 26 chr5 77389317 77389394 -75147865 + (TA)n Simple_repeat Simple_repeat 1 79 0 7 1175 434 274 82 31 chr5 77389583 77389779 -75147480 + B3 SINE B2 1 206 -10 7 1175 1197 48 7 0 chr5 77390610 77390756 -75146503 - B1_Mm SINE Alu 0 147 1 7 1175 998 88 119 40 chr5 77390798 77390975 -75146284 + B2_Mm2 SINE B2 2 192 -3 7 1175 241 329 13 0 chr5 77390985 77391061 -75146198 + ID2 SINE ID 4 80 -3 7 1175 406 310 4 117 chr5 77391582 77391812 -75145447 + B4 SINE B4 2 205 -87 7 1175 224 304 59 81 chr5 77391841 77391977 -75145282 + RSINE1 SINE B4 4 136 -29 7 1175 287 128 0 0 chr5 77392664 77392711 -75144548 - B1F SINE Alu -1 148 102 7 1175 432 213 111 0 chr5 77392831 77392939 -75144320 + PB1D9 SINE Alu 1 120 0 7 1175 444 235 78 167 chr5 77392951 77393011 -75144248 + ID SINE ID 1 53 -171 7 1175 595 67 343 0 chr5 77393011 77393116 -75144143 + B1_Mus2 SINE Alu 1 141 -6 7 1175 444 235 78 167 chr5 77393116 77393300 -75143959 + ID_B1 SINE B4 54 223 -1 7 1175 28 0 0 0 chr5 77394473 77394501 -75142758 + AT_rich Low_complexity Low_complexity 1 28 0 7 1175 448 288 89 48 chr5 77394504 77394672 -75142587 + ID_B1 SINE B4 2 176 -48 7 1175 210 350 31 10 chr5 77394603 77394701 -75142558 + B1_Mur4 SINE Alu 29 128 -22 7 1175 276 30 0 0 chr5 77394932 77394965 -75142294 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1175 320 236 1 57 chr5 77396020 77396113 -75141146 + PB1D10 SINE Alu 12 99 -18 7 1175 239 259 81 131 chr5 77396270 77396430 -75140829 + B3A SINE B2 41 192 -6 8 1175 1268 91 39 11 chr5 77397257 77397435 -75139824 - B2_Mm2 SINE B2 -12 183 1 8 1175 364 155 14 0 chr5 77397850 77397930 -75139329 - RMER19B LTR ERVK -651 86 1 8 1175 234 238 0 0 chr5 77398122 77398180 -75139079 + ID4 SINE ID 1 58 -94 8 1175 426 244 290 14 chr5 77398388 77398600 -75138659 - MTEb LTR MaLR -108 271 2 8 1175 273 345 125 14 chr5 77398871 77399015 -75138244 - B3 SINE B2 -54 162 3 8 1175 396 80 0 0 chr5 77399105 77399155 -75138104 + L1_Mus1 LINE L1 6351 6400 -167 8 1175 327 164 0 0 chr5 77399203 77399264 -75137995 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1175 245 295 16 0 chr5 77399465 77399526 -75137733 - ID4 SINE ID -20 63 2 8 1175 3566 55 31 2 chr5 77399540 77399993 -75137266 - L1_Mus1 LINE L1 -2 6565 6100 8 1175 2711 67 14 3 chr5 77399994 77400354 -75136905 + L1_Mm LINE L1 5133 5496 -387 8 1175 266 185 219 12 chr5 77400429 77400511 -75136748 - Lx2B LINE L1 -20 6980 6882 8 1175 435 81 0 0 chr5 77400511 77400548 -75136711 + (A)n Simple_repeat Simple_repeat 1 37 0 8 1175 1163 48 0 64 chr5 77400548 77400705 -75136554 + B1_Mm SINE Alu 1 147 0 8 1175 435 81 0 0 chr5 77400705 77400729 -75136530 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1175 6321 103 54 14 chr5 77400743 77401862 -75135397 + Lx2B LINE L1 5419 6572 -428 8 1175 184 246 131 48 chr5 77401944 77402089 -75135170 + L2a LINE L2 3269 3425 -1 8 1175 792 103 20 52 chr5 77402238 77402391 -75134868 - URR1A DNA MER1_type 0 226 79 8 1175 1384 65 11 21 chr5 77405085 77405274 -75131985 - B2_Mm1t SINE B2 -5 188 2 8 1175 237 291 0 0 chr5 77405284 77405344 -75131915 - ID2 SINE ID -62 90 31 8 1175 257 235 0 0 chr5 77405760 77405828 -75131431 + T-rich Low_complexity Low_complexity 1 68 0 8 1175 438 193 67 11 chr5 77405847 77405936 -75131323 - B1F1 SINE Alu -28 121 28 8 1175 1211 61 0 0 chr5 77405986 77406133 -75131126 - B1_Mus2 SINE Alu 0 147 1 8 1175 28 29 0 0 chr5 77406738 77406773 -75130486 + AT_rich Low_complexity Low_complexity 1 35 0 8 1175 380 282 109 0 chr5 77406860 77407034 -75130225 - ID_B1 SINE B4 -31 193 1 8 1175 860 136 0 43 chr5 77407210 77407394 -75129865 + CT-rich Low_complexity Low_complexity 2 177 0 8 1175 646 97 52 26 chr5 77407395 77407511 -75129748 + RMER4A LTR ERVK 348 466 0 8 1175 1170 48 7 0 chr5 77408141 77408287 -75128972 - B1_Mus2 SINE Alu 0 147 1 8 1175 691 224 178 11 chr5 77408323 77408508 -75128751 - B3 SINE B2 0 216 1 8 1175 830 160 0 40 chr5 77408672 77408822 -75128437 - B1_Mur1 SINE Alu -1 148 5 8 1175 222 280 20 0 chr5 77409957 77410007 -75127252 + RSINE1 SINE B4 3 53 -112 8 1175 296 210 32 0 chr5 77410291 77410353 -75126906 + B1_Mm SINE Alu 78 141 -6 8 1175 468 152 0 0 chr5 77410504 77410583 -75126676 + B3 SINE B2 91 169 -47 8 1175 856 139 22 7 chr5 77410671 77410809 -75126450 + B1_Mur4 SINE Alu 5 144 -6 8 1175 565 198 9 0 chr5 77410979 77411085 -75126174 + B3 SINE B2 2 108 -108 8 1175 63 57 0 0 chr5 77411500 77411605 -75125654 + AT_rich Low_complexity Low_complexity 1 105 0 8 1175 287 275 110 0 chr5 77411796 77411905 -75125354 + B4 SINE B4 112 232 -60 8 1175 201 39 0 0 chr5 77412174 77412200 -75125059 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1175 390 157 14 14 chr5 77412202 77412273 -75124986 - ID4 SINE ID -9 74 4 8 1175 333 227 59 29 chr5 77412288 77412424 -75124835 - B1F1 SINE Alu -9 140 1 8 1175 811 102 8 0 chr5 77412537 77412665 -75124594 - B2_Mm2 SINE B2 -66 129 1 8 1175 761 263 15 20 chr5 77412670 77412868 -75124391 - B3A SINE B2 0 198 2 8 1175 1470 70 5 0 chr5 77413960 77414146 -75123113 - B2_Mm1a SINE B2 -5 188 2 8 1175 484 221 12 150 chr5 77414149 77414309 -75122950 - B3A SINE B2 -1 194 57 8 1175 1240 48 0 0 chr5 77414893 77415040 -75122219 + B1_Mm SINE Alu 1 147 0 8 1175 215 288 17 0 chr5 77415078 77415137 -75122122 + B1F SINE Alu 1 60 -89 8 1175 344 228 115 44 chr5 77415714 77415842 -75121417 + ID_B1 SINE B4 83 224 0 8 1175 409 269 17 25 chr5 77416305 77416423 -75120836 + PB1D7 SINE Alu 4 120 0 8 1175 1108 52 0 7 chr5 77416505 77416642 -75120617 - B1_Mm SINE Alu -11 136 1 8 1175 496 142 605 0 chr5 77417402 77417536 -75119723 - B3 SINE B2 0 216 2 8 1175 713 58 2 62 chr5 77417556 77417669 -75119590 - B1_Mus2 SINE Alu 0 147 42 8 1175 23 0 0 0 chr5 77417745 77417768 -75119491 + AT_rich Low_complexity Low_complexity 1 23 0 8 1175 1225 14 7 7 chr5 77417862 77418009 -75119250 + B1_Mus2 SINE Alu 1 147 0 8 1175 24 53 0 0 chr5 77418140 77418178 -75119081 + AT_rich Low_complexity Low_complexity 1 38 0 8 1175 432 228 10 0 chr5 77419043 77419144 -75118115 + PB1D9 SINE Alu 8 109 -11 8 1175 323 293 49 29 chr5 77419862 77419964 -75117295 + PB1D10 SINE Alu 1 104 -45 8 1175 538 288 92 32 chr5 77420389 77420640 -75116619 + B4A SINE B4 27 292 0 8 1175 750 154 0 0 chr5 77420685 77420815 -75116444 + (TA)n Simple_repeat Simple_repeat 2 131 0 8 1175 1287 34 0 0 chr5 77421405 77421553 -75115706 + B1_Mus1 SINE Alu 1 148 0 8 1175 207 0 0 0 chr5 77421558 77421581 -75115678 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1175 600 200 0 9 chr5 77421583 77421694 -75115565 + PB1D9 SINE Alu 4 113 -7 8 1175 1242 239 127 24 chr5 77422090 77422468 -75114791 - MTD LTR MaLR 0 419 3 8 1175 28 0 0 0 chr5 77422856 77422884 -75114375 + AT_rich Low_complexity Low_complexity 1 28 0 8 1175 1161 70 115 17 chr5 77422892 77423066 -75114193 + B2_Mm2 SINE B2 1 191 -4 8 1175 195 42 0 0 chr5 77423075 77423099 -75114160 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1175 1252 41 0 0 chr5 77424029 77424175 -75113084 + B1_Mus2 SINE Alu 2 147 0 8 1175 180 111 0 0 chr5 77424175 77424202 -75113057 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1175 383 317 89 0 chr5 77424326 77424427 -75112832 + ID_B1 SINE B4 86 195 -29 8 1175 221 143 152 45 chr5 77425149 77425215 -75112044 + PB1D7 SINE Alu 48 120 0 8 1175 529 144 105 26 chr5 77425228 77425342 -75111917 + B1F2 SINE Alu 21 143 -6 8 1175 205 250 0 0 chr5 77425688 77425736 -75111523 + GA-rich Low_complexity Low_complexity 1 48 0 8 1175 474 202 0 0 chr5 77425761 77425850 -75111409 - PB1D7 SINE Alu -31 89 1 8 1175 1268 154 15 139 chr5 77426022 77426353 -75110906 - ORR1A4 LTR MaLR 0 329 40 8 1175 866 194 115 5 chr5 77429116 77429308 -75107951 + B3 SINE B2 1 213 -3 8 1175 21 36 0 0 chr5 77430505 77430533 -75106726 + GC_rich Low_complexity Low_complexity 1 28 0 8 1175 279 133 0 0 chr5 77430672 77430717 -75106542 + (GGAGAA)n Simple_repeat Simple_repeat 5 49 0 8 1175 389 327 6 24 chr5 77430728 77430894 -75106365 + GA-rich Low_complexity Low_complexity 1 163 0 8 1175 192 200 0 0 chr5 77430912 77430957 -75106302 + GA-rich Low_complexity Low_complexity 5 49 0 8 1175 237 222 0 0 chr5 77430975 77431020 -75106239 + GA-rich Low_complexity Low_complexity 5 49 0 8 1175 233 248 0 28 chr5 77431038 77431146 -75106113 + GA-rich Low_complexity Low_complexity 5 109 0 8 1175 237 222 0 0 chr5 77431164 77431209 -75106050 + GA-rich Low_complexity Low_complexity 5 49 0 8 1175 213 178 0 0 chr5 77431227 77431272 -75105987 + GA-rich Low_complexity Low_complexity 5 49 0 8 1175 418 320 6 37 chr5 77431290 77431549 -75105710 + GA-rich Low_complexity Low_complexity 1 250 0 8 1175 480 306 6 39 chr5 77431587 77431820 -75105439 + GA-rich Low_complexity Low_complexity 1 225 0 8 1175 363 231 39 55 chr5 77432580 77432708 -75104551 + U1 snRNA snRNA 35 160 -5 8 1175 316 215 15 0 chr5 77433334 77433399 -75103860 + B4A SINE B4 20 85 -207 8 1175 828 134 28 10 chr5 77433407 77433915 -75103344 + (CA)n Simple_repeat Simple_repeat 1 517 0 8 1175 341 240 0 26 chr5 77434250 77434327 -75102932 + MT2B LTR ERVL 187 261 -340 8 1175 471 198 31 0 chr5 77434262 77434358 -75102901 + B1_Mur1 SINE Alu 42 140 -9 8 1175 237 258 194 0 chr5 77434375 77434437 -75102822 + ID2 SINE ID 2 75 -8 8 1175 476 162 9 83 chr5 77434640 77434748 -75102511 - PB1D9 SINE Alu -1 119 20 8 1175 887 136 13 33 chr5 77434953 77435105 -75102154 + B1_Mur4 SINE Alu 1 149 -1 8 1175 450 0 0 0 chr5 77435252 77435302 -75101957 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1175 22 0 0 0 chr5 77436835 77436857 -75100402 + AT_rich Low_complexity Low_complexity 1 22 0 8 1175 1086 300 54 19 chr5 77436984 77437450 -75099809 + L1MB3 LINE L1 5601 6082 -101 8 1175 1106 115 0 6 chr5 77437496 77437671 -75099588 + (TTC)n Simple_repeat Simple_repeat 1 174 0 8 1175 330 26 0 0 chr5 77437672 77437711 -75099548 + (CTA)n Simple_repeat Simple_repeat 2 40 0 8 1175 299 242 0 0 chr5 77438033 77438095 -75099164 + ID4_ SINE ID 11 72 -11 8 1175 676 211 45 0 chr5 77438803 77438936 -75098323 - B1_Mur2 SINE Alu -9 140 2 8 1175 21 0 0 0 chr5 77438946 77438967 -75098292 + AT_rich Low_complexity Low_complexity 1 21 0 8 1175 186 43 0 0 chr5 77439193 77439216 -75098043 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1175 21 0 0 0 chr5 77439810 77439831 -75097428 + AT_rich Low_complexity Low_complexity 1 21 0 8 1175 229 288 0 0 chr5 77439857 77439923 -75097336 - tRNA-Ala-GCA tRNA tRNA -7 68 3 8 1175 235 75 0 70 chr5 77440078 77440135 -75097124 + (TTTTTG)n Simple_repeat Simple_repeat 3 55 0 8 1175 28 48 0 0 chr5 77440496 77440538 -75096721 + AT_rich Low_complexity Low_complexity 1 42 0 8 1175 333 120 31 0 chr5 77440544 77440614 -75096645 - B2_Mm2 SINE B2 -95 121 47 8 1175 1098 127 35 0 chr5 77440665 77440838 -75096421 - B2_Mm1t SINE B2 -14 179 1 8 1175 881 176 27 43 chr5 77441002 77441186 -75096073 - B2_Mm2 SINE B2 -14 181 1 9 1175 1836 202 55 21 chr5 77441437 77441822 -75095437 - MTD LTR MaLR -20 399 2 9 1175 995 61 0 169 chr5 77441822 77442000 -75095259 + B1_Mus1 SINE Alu 1 148 0 9 1175 285 269 101 58 chr5 77442424 77442562 -75094697 - MamRep605 Unknown Unknown -48 828 685 9 1175 306 0 0 0 chr5 77442731 77442765 -75094494 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 1175 383 256 176 17 chr5 77442849 77442968 -75094291 - B3 SINE B2 -47 169 32 9 1175 1151 41 14 0 chr5 77443084 77443229 -75094030 - B1_Mus2 SINE Alu 0 147 1 9 1175 342 0 0 0 chr5 77443625 77443663 -75093596 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1175 222 37 0 0 chr5 77443663 77443689 -75093570 + (GA)n Simple_repeat Simple_repeat 2 28 0 9 1175 413 108 15 0 chr5 77443689 77443754 -75093505 + B1_Mus2 SINE Alu 80 145 -2 9 1175 234 0 0 0 chr5 77443754 77443780 -75093479 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 1175 361 298 42 84 chr5 77443808 77443951 -75093308 + B1F SINE Alu 13 149 0 9 1175 348 43 0 0 chr5 77444550 77444596 -75092663 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 9 1175 994 90 30 0 chr5 77444596 77444729 -75092530 - B1_Mus1 SINE Alu -10 138 2 9 1175 201 189 19 19 chr5 77445029 77445083 -75092176 + (CGGGG)n Simple_repeat Simple_repeat 4 57 0 9 1175 1387 73 21 10 chr5 77445958 77446151 -75091108 - B2_Mm2 SINE B2 0 195 1 9 1175 210 254 163 67 chr5 77446702 77446837 -75090422 + B4A SINE B4 1 148 -144 9 1175 297 0 0 0 chr5 77446917 77446950 -75090309 + (TC)n Simple_repeat Simple_repeat 1 33 0 9 1175 338 42 0 20 chr5 77446950 77446998 -75090261 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1175 327 363 30 71 chr5 77447294 77447632 -75089627 + L2 LINE L2 1717 2040 -1379 9 1175 187 307 82 38 chr5 77447753 77447936 -75089323 + L2 LINE L2 2123 2313 -1106 9 1175 2379 68 15 33 chr5 77448001 77448334 -75088925 - IAPLTR2b LTR ERVK 0 327 1 9 1175 15034 53 9 3 chr5 77448336 77450150 -75087109 - IAPEz-int LTR ERVK -2 6479 4656 9 1175 1907 89 0 0 chr5 77450149 77450395 -75086864 - IAPEz-int LTR ERVK -5183 2497 2252 9 1175 9859 66 47 91 chr5 77450396 77452012 -75085247 - IAPEz-int LTR ERVK -5004 1477 9 9 1175 2325 78 15 33 chr5 77452013 77452346 -75084913 - IAPLTR2b LTR ERVK 0 327 1 9 1175 189 0 0 0 chr5 77452384 77452405 -75084854 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1175 261 351 28 51 chr5 77452525 77452766 -75084493 + L2 LINE L2 2701 2936 -483 9 1175 814 213 17 89 chr5 77452766 77453003 -75084256 - ID_B1 SINE B4 -3 221 2 9 1175 261 351 28 51 chr5 77453003 77453016 -75084243 + L2 LINE L2 2937 2949 -470 9 1175 221 309 63 11 chr5 77453459 77453554 -75083705 + L2 LINE L2 2047 2146 -1273 9 1175 235 315 50 78 chr5 77453763 77453904 -75083355 - L2 LINE L2 -1407 2012 1876 9 1175 202 188 0 0 chr5 77453926 77453958 -75083301 + polypyrimidine Low_complexity Low_complexity 2 33 0 9 1175 622 184 15 39 chr5 77453959 77454089 -75083170 - B1_Mur2 SINE Alu -10 139 13 9 1175 308 252 30 20 chr5 77454240 77454254 -75083005 + B4 SINE B4 71 85 -207 9 1175 411 265 0 0 chr5 77454254 77454352 -75082907 + B1F2 SINE Alu 1 98 -51 9 1175 406 302 78 0 chr5 77455130 77455246 -75082013 - PB1 SINE Alu 0 127 3 9 1175 260 266 21 11 chr5 77455259 77455354 -75081905 + L2 LINE L2 2343 2438 -981 9 1175 223 303 0 70 chr5 77455422 77455493 -75081766 - RSINE1 SINE B4 0 165 100 9 1175 1191 96 0 114 chr5 77456099 77456335 -75080924 + ORR1A3 LTR MaLR 1 209 -117 9 1175 1368 147 9 4 chr5 77456747 77456972 -75080287 + URR1A DNA MER1_type 1 226 0 9 1175 414 218 35 0 chr5 77457138 77457225 -75080034 - B1F2 SINE Alu -55 94 5 9 1175 405 0 0 0 chr5 77457361 77457406 -75079853 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1175 930 134 42 0 chr5 77457689 77457831 -75079428 + B1_Mur2 SINE Alu 2 149 0 9 1175 2036 114 84 19 chr5 77458028 77458396 -75078863 - MTB_Mm LTR MaLR -15 392 1 9 1175 256 237 13 38 chr5 77458396 77458468 -75078791 - MTC LTR MaLR -334 87 18 9 1175 414 134 0 0 chr5 77459199 77459266 -75077993 + MTC LTR MaLR 139 205 -216 9 1175 272 343 65 28 chr5 77459804 77460020 -75077239 - MIR SINE MIR -36 226 3 9 1175 254 263 61 73 chr5 77460245 77460263 -75076996 + CYRA11_Mm Unknown Y-chromosome 184 201 -416 9 1175 3786 71 51 10 chr5 77460263 77460774 -75076485 - L1Md_F2 LINE L1 -3 6579 6048 9 1175 254 263 61 73 chr5 77460774 77460919 -75076340 + CYRA11_Mm Unknown Y-chromosome 202 345 -272 9 1175 1131 146 31 0 chr5 77460919 77460966 -75076293 - URR1A DNA MER1_type -28 198 1 9 1175 449 179 0 9 chr5 77461016 77461056 -75076203 + polypyrimidine Low_complexity Low_complexity 68 106 0 9 1175 762 69 0 0 chr5 77461056 77461157 -75076102 + (TTC)n Simple_repeat Simple_repeat 3 103 0 9 1175 449 179 0 9 chr5 77461157 77461223 -75076036 + polypyrimidine Low_complexity Low_complexity 2 67 0 9 1175 375 144 20 10 chr5 77461579 77461677 -75075582 + (TA)n Simple_repeat Simple_repeat 1 99 0 9 1175 746 122 0 34 chr5 77461678 77461797 -75075462 - B1_Mus1 SINE Alu -7 141 27 9 1175 234 0 0 0 chr5 77461809 77461835 -75075424 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 9 1175 704 183 99 0 chr5 77461837 77461968 -75075291 - B1_Mur4 SINE Alu -6 144 1 9 1175 336 272 33 0 chr5 77462015 77462107 -75075152 - PB1D10 SINE Alu 0 117 23 9 1175 1170 262 266 20 chr5 77462525 77463179 -75074080 - Lx8 LINE L1 -96 7377 6563 9 1175 180 0 0 0 chr5 77463295 77463315 -75073944 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9 1175 1157 78 0 0 chr5 77463366 77463508 -75073751 + B1_Mus1 SINE Alu 1 142 -6 9 1175 315 0 0 0 chr5 77463510 77463545 -75073714 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 146 300 27 0 0 chr5 77463547 77463584 -75073675 + (TAA)n Simple_repeat Simple_repeat 3 39 0 9 1176 207 0 0 0 chr5 77463638 77463661 -75073598 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1176 794 68 246 0 chr5 77463689 77463807 -75073452 + B1_Mus1 SINE Alu 2 148 0 9 1176 635 132 123 0 chr5 77463866 77463980 -75073279 - B1_Mur4 SINE Alu -18 132 5 9 1176 255 307 36 98 chr5 77464463 77464575 -75072684 + B1F SINE Alu 18 122 -27 9 1176 421 187 0 13 chr5 77465115 77465191 -75072068 + PB1D9 SINE Alu 1 75 -45 9 1176 1426 68 0 26 chr5 77465337 77465532 -75071727 + L1_Mus1 LINE L1 6376 6565 -2 9 1176 298 243 181 45 chr5 77465714 77465869 -75071390 + B3A SINE B2 1 176 -22 9 1176 302 200 43 0 chr5 77466449 77466519 -75070740 + Lx8 LINE L1 7395 7467 -6 9 1176 431 271 32 38 chr5 77466620 77466777 -75070482 - Tigger7 DNA MER2_type 0 2491 2336 9 1176 329 283 90 10 chr5 77466829 77466929 -75070330 - Tigger7 DNA MER2_type -2375 116 9 9 1176 238 276 188 14 chr5 77467258 77467452 -75069807 - MIR SINE MIR -9 259 16 9 1176 426 281 58 0 chr5 77467488 77467609 -75069650 - MER5B DNA MER1_type -44 134 7 9 1176 289 261 63 56 chr5 77467995 77468121 -75069138 - RMER12 LTR ERVK 0 1322 1196 9 1176 5042 140 82 36 chr5 77468155 77469192 -75068067 - RMER12 LTR ERVK -237 1085 1 9 1176 250 98 39 0 chr5 77469444 77469495 -75067764 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 9 1176 212 328 18 56 chr5 77469554 77469700 -75067559 - MIRm SINE MIR -113 163 19 9 1176 22 0 0 0 chr5 77470228 77470250 -75067009 + AT_rich Low_complexity Low_complexity 1 22 0 9 1176 274 278 31 7 chr5 77470699 77470852 -75066407 - L1MA4A LINE L1 -364 5939 5724 9 1176 1083 145 79 15 chr5 77471400 77471603 -75065656 + B3 SINE B2 1 216 0 9 1176 525 147 264 9 chr5 77472101 77472211 -75065048 - B1_Mus1 SINE Alu -6 142 5 9 1176 314 127 48 14 chr5 77472333 77472416 -75064843 - B1_Mur1 SINE Alu -5 144 26 9 1176 277 253 145 0 chr5 77472523 77472606 -75064653 - Lx8 LINE L1 -333 7140 7046 9 1176 681 237 39 87 chr5 77472695 77472903 -75064356 - B3A SINE B2 0 198 1 9 1176 371 242 156 44 chr5 77473262 77473422 -75063837 - MER5B DNA MER1_type 0 178 1 9 1176 1562 288 66 36 chr5 77473831 77474577 -75062682 - L1MC2 LINE L1 -288 6056 5289 9 1176 270 0 0 0 chr5 77474592 77474622 -75062637 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1176 538 125 0 0 chr5 77474622 77474702 -75062557 - B1_Mur4 SINE Alu -11 139 60 9 1176 260 271 166 22 chr5 77474712 77474893 -75062366 - L1MC2 LINE L1 -825 5321 5115 9 1176 403 232 0 0 chr5 77474950 77475045 -75062214 - ID_B1 SINE B4 -8 216 122 9 1176 225 316 30 30 chr5 77475215 77475316 -75061943 + MIRb SINE MIR 159 259 -9 9 1176 24 67 0 0 chr5 77475484 77475529 -75061730 + AT_rich Low_complexity Low_complexity 1 45 0 9 1176 216 0 0 0 chr5 77475542 77475566 -75061693 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1176 489 200 25 25 chr5 77475567 77475685 -75061574 - RSINE1 SINE B4 -45 120 3 9 1176 468 301 24 0 chr5 77475803 77475926 -75061333 + RSINE1 SINE B4 4 129 -36 9 1176 242 185 49 12 chr5 77475957 77476039 -75061220 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 9 1176 257 75 0 24 chr5 77476845 77476886 -75060373 + (TCC)n Simple_repeat Simple_repeat 3 42 0 9 1176 1126 88 0 0 chr5 77476886 77477034 -75060225 - B1_Mus1 SINE Alu 0 148 1 9 1176 681 280 72 32 chr5 77477191 77477442 -75059817 - B4A SINE B4 -8 284 24 9 1176 969 211 28 23 chr5 77477468 77477682 -75059577 + B3 SINE B2 2 216 0 9 1176 23 0 0 0 chr5 77477686 77477709 -75059550 + AT_rich Low_complexity Low_complexity 1 23 0 9 1176 310 313 0 0 chr5 77477710 77477793 -75059466 - ID4 SINE ID 0 83 1 9 1176 517 95 27 62 chr5 77477901 77478013 -75059246 - Lx9 LINE L1 -1 7643 7536 9 1176 495 192 84 84 chr5 77478013 77478155 -75059104 + Lx9 LINE L1 7249 7390 -254 9 1176 1128 61 0 33 chr5 77478972 77479124 -75058135 + B1_Mus1 SINE Alu 2 148 0 9 1176 252 283 111 19 chr5 77479131 77479239 -75058020 + B4 SINE B4 70 187 -105 9 1176 550 236 0 0 chr5 77479149 77479259 -75058000 + PB1D10 SINE Alu 6 115 -2 9 1176 565 281 22 0 chr5 77479370 77479509 -75057750 - B1_Mus2 SINE Alu -5 142 1 1 1176 5021 145 39 22 chr5 77479537 77480490 -75056769 + RLTR13C1 LTR ERVK 13 981 -2 1 1176 598 222 33 40 chr5 77480592 77480742 -75056517 + B1_Mur1 SINE Alu 1 149 0 1 1176 3392 125 33 14 chr5 77480789 77481340 -75055919 - RLTR31_Mm LTR ERVK 0 561 1 1 1176 931 314 100 27 chr5 77481441 77481959 -75055300 - Lx9 LINE L1 -148 7496 6941 1 1176 391 167 0 22 chr5 77482970 77483062 -75054197 + CT-rich Low_complexity Low_complexity 2 91 0 1 1176 303 253 76 0 chr5 77483099 77483178 -75054081 - PB1D7 SINE Alu -33 87 3 1 1176 360 303 103 14 chr5 77484030 77484244 -75053015 - L1M3 LINE L1 -1277 4863 4631 1 1176 481 185 84 0 chr5 77484235 77484354 -75052905 + L1MB7 LINE L1 6037 6165 -19 1 1176 403 171 93 28 chr5 77485148 77485256 -75052003 - MTEa LTR MaLR -7 372 258 1 1176 217 222 164 14 chr5 77485361 77485434 -75051825 - B3 SINE B2 -129 87 4 1 1176 1353 100 0 16 chr5 77485448 77485641 -75051618 - B2_Mm2 SINE B2 -5 190 1 1 1176 891 246 19 19 chr5 77486485 77486700 -75050559 - B3 SINE B2 -1 215 1 1 1176 1061 216 19 9 chr5 77486920 77487130 -75050129 + B3 SINE B2 1 212 -4 1 1176 681 47 0 0 chr5 77487136 77487221 -75050038 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 1 1176 448 264 18 77 chr5 77487934 77488102 -75049157 - RSINE1 SINE B4 0 165 8 1 1176 222 270 156 39 chr5 77489237 77489391 -75047868 - L2b LINE L2 -287 3088 2917 1 1176 330 242 6 18 chr5 77490890 77491000 -75046259 + AluG_3 SINE Alu 12 218 -93 1 1176 816 193 0 0 chr5 77491113 77491357 -75045902 + (TG)n Simple_repeat Simple_repeat 1 244 0 1 1176 299 314 121 25 chr5 77491582 77491739 -75045520 + MIRb SINE MIR 38 209 -59 1 1176 216 265 69 30 chr5 77491829 77491930 -75045329 - L2a LINE L2 -5 3421 3317 1 1176 578 272 33 24 chr5 77492388 77492599 -75044660 + B3 SINE B2 1 213 -3 1 1176 207 0 0 0 chr5 77492629 77492652 -75044607 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1176 601 245 29 0 chr5 77492668 77492807 -75044452 + B1_Mur1 SINE Alu 7 149 0 1 1176 216 0 0 0 chr5 77493125 77493149 -75044110 + (GGGTG)n Simple_repeat Simple_repeat 4 27 0 1 1176 684 271 87 62 chr5 77493353 77493485 -75043774 - Tigger7 DNA MER2_type -1 2490 2344 1 1176 252 0 0 0 chr5 77493485 77493513 -75043746 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1 1176 684 271 87 62 chr5 77493513 77493781 -75043478 - Tigger7 DNA MER2_type -148 2343 2080 1 1176 1717 133 85 3 chr5 77493785 77494114 -75043145 + RMER4B LTR ERVK 1 356 -229 1 1176 1121 102 0 0 chr5 77494114 77494271 -75042988 - RLTR1D LTR ERV1 0 605 449 1 1176 1069 101 0 0 chr5 77494268 77494426 -75042833 - MTA_Mm LTR MaLR -238 158 1 1 1176 6757 106 23 79 chr5 77494426 77495589 -75041670 - MTA_Mm-int LTR MaLR 0 1098 1 1 1176 2688 59 32 3 chr5 77495593 77495970 -75041289 - MTA_Mm LTR MaLR -8 388 1 1 1176 667 245 138 8 chr5 77497041 77497288 -75039971 - RLTR40 LTR ERVK -48 769 491 1 1176 1941 129 87 40 chr5 77497289 77497636 -75039623 - ORR1B2 LTR MaLR 0 367 5 1 1176 262 115 0 37 chr5 77497675 77497729 -75039530 + (TTA)n Simple_repeat Simple_repeat 1 52 0 1 1176 320 204 160 20 chr5 77497729 77497829 -75039430 - B1_Mur1 SINE Alu -2 147 34 1 1176 23 23 0 44 chr5 77498550 77498579 -75038680 + AT_rich Low_complexity Low_complexity 1 29 0 1 1176 1073 191 28 5 chr5 77498579 77498790 -75038469 + B3 SINE B2 1 216 0 1 1176 23 23 0 44 chr5 77498790 77498805 -75038454 + AT_rich Low_complexity Low_complexity 1 14 0 1 1176 837 164 482 26 chr5 77498847 77499106 -75038153 + ORR1C1 LTR MaLR 1 378 0 1 1176 275 289 124 75 chr5 77499160 77499321 -75037938 - MER2 DNA MER2_type -176 169 1 1 1176 960 134 5 82 chr5 77500089 77500284 -75036975 + B2_Mm2 SINE B2 2 181 -14 1 1176 861 160 14 7 chr5 77500520 77500665 -75036594 + B1_Mur4 SINE Alu 2 147 -3 2 1176 850 136 144 23 chr5 77500913 77501086 -75036173 + B2_Mm2 SINE B2 2 195 0 3 1176 520 265 129 24 chr5 77501298 77501507 -75035752 + L1MC2 LINE L1 5989 6219 -125 4 1176 582 309 151 46 chr5 77502165 77502796 -75034463 - MamGypLTR1d LTR Gypsy -23 790 42 5 1176 605 247 153 0 chr5 77502979 77503129 -75034130 + MER2 DNA MER2_type 151 323 -22 6 1176 507 60 0 0 chr5 77503148 77503215 -75034044 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 7 1176 1051 31 0 0 chr5 77503217 77503344 -75033915 - B1_Mus2 SINE Alu -6 141 15 8 1176 22 0 0 0 chr5 77503631 77503653 -75033606 + AT_rich Low_complexity Low_complexity 1 22 0 9 1176 191 299 15 15 chr5 77504731 77504799 -75032460 + L2a LINE L2 3354 3421 -5 1 1176 3842 23 5 2 chr5 77505452 77505887 -75031372 + RLTR10C LTR ERVK 1 436 0 1 1176 475 206 77 128 chr5 77506114 77506194 -75031065 + L1MB8 LINE L1 5112 5197 -949 1 1176 1264 173 5 5 chr5 77506194 77506397 -75030862 + B3 SINE B2 2 204 -12 1 1176 475 206 77 128 chr5 77506397 77506550 -75030709 + L1MB8 LINE L1 5198 5333 -813 1 1176 275 277 28 47 chr5 77506557 77506663 -75030596 + PB1D10 SINE Alu 6 109 -8 1 1176 516 223 0 9 chr5 77506674 77506787 -75030472 + L1MB8 LINE L1 5317 5428 -750 1 1176 467 127 37 25 chr5 77506795 77506876 -75030383 - B1_Mus1 SINE Alu -53 95 14 1 1176 242 375 45 28 chr5 77506915 77507162 -75030097 + L1MB8 LINE L1 5571 5821 -353 1 1176 515 270 0 0 chr5 77507222 77507337 -75029922 - PB1D10 SINE Alu -1 116 2 1 1176 311 266 126 18 chr5 77507340 77507451 -75029808 + L1MB8 LINE L1 5820 5942 -236 1 1176 245 316 42 34 chr5 77507451 77507569 -75029690 + PB1D7 SINE Alu 2 120 0 1 1176 3519 29 50 2 chr5 77507677 77507882 -75029377 - RLTR10C LTR ERVK 0 436 233 1 1176 198 0 0 0 chr5 77507882 77507904 -75029355 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 1176 3519 29 50 2 chr5 77507904 77508114 -75029145 - RLTR10C LTR ERVK -204 232 2 1 1176 457 290 169 59 chr5 77508177 77508479 -75028780 - MLT1A0 LTR MaLR -2 465 23 2 1176 2209 170 196 12 chr5 77508495 77509001 -75028258 + RMER19B LTR ERVK 304 902 0 2 1176 252 301 99 88 chr5 77509237 77509408 -75027851 + MER5B DNA MER1_type 4 176 -2 2 1176 447 248 50 14 chr5 77509483 77509622 -75027637 - B1F1 SINE Alu -2 147 4 2 1176 230 308 97 58 chr5 77510363 77510518 -75026741 - MLT1J2 LTR MaLR -28 420 260 2 1176 239 235 77 58 chr5 77510814 77510918 -75026341 - B3 SINE B2 -109 107 2 2 1176 346 329 8 120 chr5 77511201 77511443 -75025816 + MLT1L LTR MaLR 180 394 -216 2 1176 548 132 34 34 chr5 77511706 77511855 -75025404 + GA-rich Low_complexity Low_complexity 2 150 0 2 1176 228 35 0 0 chr5 77512314 77512343 -75024916 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1176 1888 225 48 40 chr5 77512441 77512895 -75024364 + RLTR20C LTR ERVK 1 458 -76 2 1176 312 236 157 0 chr5 77512926 77513015 -75024244 - B3 SINE B2 -11 205 103 3 1176 198 0 0 0 chr5 77513041 77513063 -75024196 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1176 1600 193 66 71 chr5 77513063 77513471 -75023788 - Lx9 LINE L1 -167 7477 7072 3 1176 208 98 23 47 chr5 77513718 77513761 -75023498 + CT-rich Low_complexity Low_complexity 1 42 0 3 1176 382 327 79 13 chr5 77514482 77514634 -75022625 + RSINE1 SINE B4 4 165 0 3 1176 230 268 36 0 chr5 77515254 77515310 -75021949 + MLT1L LTR MaLR 202 259 -351 3 1176 388 198 35 11 chr5 77515298 77515385 -75021874 + PB1D10 SINE Alu 21 109 -8 3 1176 659 123 150 39 chr5 77515504 77515631 -75021628 - B1_Mus2 SINE Alu 0 147 7 3 1176 464 226 8 17 chr5 77515800 77515917 -75021342 - MER5A1 DNA MER1_type -38 128 13 3 1176 22 35 0 0 chr5 77516026 77516055 -75021204 + AT_rich Low_complexity Low_complexity 1 29 0 3 1176 369 0 0 0 chr5 77516243 77516284 -75020975 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1176 24 53 0 0 chr5 77516591 77516629 -75020630 + AT_rich Low_complexity Low_complexity 1 38 0 4 1176 198 71 0 0 chr5 77518655 77518683 -75018576 + (TTA)n Simple_repeat Simple_repeat 1 28 0 4 1176 712 297 42 23 chr5 77518724 77518938 -75018321 - ID_B1 SINE B4 -1 223 6 4 1176 23 86 0 0 chr5 77519435 77519493 -75017766 + AT_rich Low_complexity Low_complexity 1 58 0 4 1176 288 130 0 0 chr5 77519986 77520032 -75017227 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1176 1241 86 0 0 chr5 77520102 77520265 -75016994 + B2_Mm2 SINE B2 2 164 -31 4 1176 960 169 0 0 chr5 77520269 77520447 -75016812 + GA-rich Low_complexity Low_complexity 3 180 0 4 1176 426 324 0 0 chr5 77520751 77520856 -75016403 + U13_ snRNA snRNA 1 105 -3 4 1176 394 265 10 0 chr5 77521035 77521137 -75016122 + PB1D10 SINE Alu 2 104 -13 4 1176 230 280 39 26 chr5 77522215 77522292 -75014967 + ID4 SINE ID 1 78 -5 5 1176 1577 43 27 0 chr5 77522674 77522862 -75014397 - B2_Mm1t SINE B2 0 193 1 5 1176 183 347 0 40 chr5 77523516 77523591 -75013668 + MIR3 SINE MIR 118 189 -19 5 1176 1430 70 37 11 chr5 77525472 77525661 -75011598 + B2_Mm2 SINE B2 2 195 0 5 1176 366 61 0 0 chr5 77525661 77525710 -75011549 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 5 1176 432 55 0 0 chr5 77527281 77527336 -75009923 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1176 249 276 0 33 chr5 77527365 77527425 -75009834 - ID SINE ID -156 68 11 5 1176 1481 185 72 115 chr5 77527718 77528109 -75009150 + ORR1D1 LTR MaLR 1 374 0 5 1176 367 324 0 10 chr5 77528109 77528212 -75009047 + BC1_Mm scRNA scRNA 5 106 -46 5 1176 1063 268 10 44 chr5 77530389 77530665 -75006594 + B4 SINE B4 6 273 -19 5 1176 456 19 0 0 chr5 77530665 77530718 -75006541 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1176 1063 268 10 44 chr5 77530718 77530738 -75006521 + B4 SINE B4 274 292 0 5 1176 288 0 0 0 chr5 77530740 77530772 -75006487 + (CCA)n Simple_repeat Simple_repeat 1 32 0 6 1176 259 257 131 85 chr5 77531272 77531425 -75005834 + BGLII_Mus LTR ERVK 23 182 -240 6 1176 240 287 8 151 chr5 77531438 77531477 -75005782 + B4A SINE B4 52 73 -219 6 1176 249 300 0 136 chr5 77531477 77531558 -75005701 + PB1 SINE Alu 1 70 -57 6 1176 237 272 98 12 chr5 77532387 77532469 -75004790 + MamRep1161 DNA Tigger 30 118 -839 6 1176 229 271 164 53 chr5 77532469 77532539 -75004720 + MamRep1161 DNA TcMar 45 213 -744 6 1176 5760 129 109 25 chr5 77532920 77533938 -75003321 + RLTR25A LTR ERVK 1 1103 0 6 1176 206 417 27 31 chr5 77534199 77534422 -75002837 + MIRb SINE MIR 4 225 -43 6 1176 277 336 94 47 chr5 77534735 77534863 -75002396 - MER94 DNA AcHobo 0 134 1 6 1176 410 0 20 0 chr5 77535272 77535322 -75001937 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1176 285 321 121 27 chr5 77536594 77536818 -75000441 + MIRc SINE MIR 11 255 -13 7 1176 1102 58 58 0 chr5 77537263 77537402 -74999857 + B1_Mus1 SINE Alu 1 147 -1 7 1176 399 310 4 6 chr5 77537426 77537533 -74999726 + PB1D10 SINE Alu 14 119 -1 7 1176 967 101 72 0 chr5 77537638 77537776 -74999483 + B1_Mus1 SINE Alu 1 148 0 7 1176 840 249 93 5 chr5 77537864 77538058 -74999201 - B3 SINE B2 -5 211 1 7 1176 1342 75 37 5 chr5 77538484 77538671 -74998588 + B2_Mm2 SINE B2 2 194 -1 7 1176 209 291 74 54 chr5 77539057 77539206 -74998053 - L3 LINE CR1 -3551 938 787 7 1176 610 233 25 51 chr5 77540910 77541068 -74996191 + ID_B1 SINE B4 69 222 -2 7 1176 205 179 0 0 chr5 77541086 77541125 -74996134 + GA-rich Low_complexity Low_complexity 4 42 0 7 1176 381 202 47 31 chr5 77542115 77542243 -74995016 + Lx9 LINE L1 7386 7515 -129 7 1176 799 180 6 11 chr5 77542255 77542435 -74994824 + (TATG)n Simple_repeat Simple_repeat 2 180 0 8 1176 321 210 70 89 chr5 77542442 77542599 -74994660 + Lx9 LINE L1 7458 7611 -33 8 1176 233 202 348 0 chr5 77542695 77542784 -74994475 + B1_Mur2 SINE Alu 26 145 -4 8 1176 540 261 11 13 chr5 77542818 77542949 -74994310 - PB1D7 SINE Alu -17 132 9 8 1176 262 300 28 28 chr5 77542885 77542957 -74994302 - B4A SINE B4 -137 155 84 8 1176 21 36 0 0 chr5 77543672 77543700 -74993559 + GC_rich Low_complexity Low_complexity 1 28 0 8 1176 304 328 0 0 chr5 77545104 77545197 -74992062 + ID4 SINE ID 3 95 -57 8 1176 445 289 95 50 chr5 77545235 77545435 -74991824 - MIR SINE MIR -25 237 29 8 1176 392 276 10 10 chr5 77545529 77545628 -74991631 + L2a LINE L2 3316 3414 -12 8 1176 232 380 141 23 chr5 77545757 77546061 -74991198 - MLT1L LTR MaLR -52 558 219 8 1176 431 364 24 12 chr5 77546897 77547064 -74990195 + MIRb SINE MIR 23 191 -77 9 1176 31 26 0 0 chr5 77547066 77547104 -74990155 + AT_rich Low_complexity Low_complexity 1 38 0 9 1176 3672 143 112 19 chr5 77547388 77548128 -74989131 + RMER17D2 LTR ERVK 1 809 0 9 1176 845 61 9 0 chr5 77549540 77549654 -74987605 - B1_Mm SINE Alu 0 147 33 9 1176 22 0 0 0 chr5 77549659 77549681 -74987578 + AT_rich Low_complexity Low_complexity 1 22 0 9 1176 270 0 0 0 chr5 77550335 77550365 -74986894 + (TC)n Simple_repeat Simple_repeat 1 30 0 9 1176 1033 127 208 0 chr5 77550393 77550566 -74986693 - B3 SINE B2 -6 210 2 9 1176 1651 128 31 88 chr5 77550633 77551019 -74986240 + RMER17C LTR ERVK 47 410 0 9 1176 335 92 162 44 chr5 77551019 77551084 -74986175 - MT2B LTR ERVL -528 73 1 9 1176 528 45 0 0 chr5 77551143 77551210 -74986049 + (CA)n Simple_repeat Simple_repeat 1 67 0 9 1176 315 332 125 70 chr5 77552518 77552872 -74984387 - MLT1G LTR MaLR -53 502 88 1 1176 366 214 3 0 chr5 77553040 77553108 -74984151 + B1_Mur3 SINE Alu 59 128 -21 1 1176 263 71 24 0 chr5 77553110 77553152 -74984107 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1 1176 520 331 41 23 chr5 77553967 77554233 -74983026 - RMER15-int LTR ERVL -498 4501 4231 1 1176 4164 59 60 8 chr5 77554299 77554831 -74982428 + LTRIS2 LTR ERV1 5 564 0 1 1176 3323 38 2 8 chr5 77554998 77555396 -74981863 + MTA_Mm LTR MaLR 1 396 0 1 1176 638 237 132 6 chr5 77555867 77556041 -74981218 + Lx9 LINE L1 7096 7291 -353 1 1176 401 153 56 56 chr5 77556071 77556161 -74981098 + RLTR24 LTR ERV1 1 90 -439 1 1176 526 98 116 32 chr5 77556197 77556292 -74980967 - B1_Mur4 SINE Alu -1 149 47 1 1176 2073 156 102 84 chr5 77556294 77556756 -74980503 + RLTR24 LTR ERV1 58 527 -2 1 1176 1499 139 9 68 chr5 77556758 77557081 -74980178 + Lx9 LINE L1 7315 7618 -26 1 1176 227 314 14 14 chr5 77557153 77557224 -74980035 + L4 LINE RTE 1774 1844 -185 1 1176 597 296 221 14 chr5 77557257 77557551 -74979708 - MLT1A0 LTR MaLR 0 365 11 1 1176 4311 163 191 31 chr5 77557572 77558523 -74978736 + RLTR25A LTR ERVK 1 1103 0 1 1176 620 136 0 8 chr5 77558528 77558654 -74978605 + (TG)n Simple_repeat Simple_repeat 1 125 0 1 1176 305 96 18 71 chr5 77558654 77558710 -74978549 - HAL1-3A_ME LINE L1 -831 2027 1975 1 1176 435 123 0 0 chr5 77558710 77558791 -74978468 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1176 314 243 14 14 chr5 77558793 77558864 -74978395 - ID SINE ID -151 73 3 1 1176 22 35 0 0 chr5 77558874 77558903 -74978356 + AT_rich Low_complexity Low_complexity 1 29 0 1 1176 327 274 162 43 chr5 77560019 77560086 -74977173 + MIR SINE MIR 34 117 -151 1 1176 2703 97 36 70 chr5 77560086 77560531 -74976728 + RLTR23 LTR ERV1 1 430 0 1 1176 327 274 162 43 chr5 77560531 77560673 -74976586 + MIR SINE MIR 111 268 0 1 1176 238 364 132 0 chr5 77560699 77560828 -74976431 - MIRb SINE MIR -46 222 77 1 1176 420 220 27 27 chr5 77561119 77561231 -74976028 + PB1D10 SINE Alu 1 112 -5 1 1176 311 311 78 0 chr5 77561273 77561376 -74975883 - MER58B DNA MER1_type -42 299 189 1 1176 644 307 91 127 chr5 77561463 77561881 -74975378 + MLT2D LTR ERVL 4 406 -8 1 1176 336 305 170 58 chr5 77561893 77562081 -74975178 + MLT1J LTR MaLR 108 316 -196 1 1176 430 233 0 32 chr5 77562164 77562257 -74975002 - ID_B1 SINE B4 -12 212 123 1 1176 640 232 15 35 chr5 77562308 77562475 -74974784 + RMER20B LTR ERVK 1 161 -355 1 1176 249 295 97 35 chr5 77562676 77562820 -74974439 + RMER20B LTR ERVK 364 516 0 1 1176 462 178 133 0 chr5 77563325 77563415 -74973844 - ORR1D1 LTR MaLR 0 374 273 1 1176 588 170 0 0 chr5 77564017 77564111 -74973148 + B1F2 SINE Alu 44 137 -12 1 1176 257 264 137 2 chr5 77564357 77564457 -74972802 + MIR SINE MIR 49 162 -46 1 1176 796 203 14 0 chr5 77564735 77564878 -74972381 - B1_Mur1 SINE Alu 0 149 5 1 1176 428 266 56 25 chr5 77564891 77565053 -74972206 - Tigger7 DNA MER2_type -8 2483 2317 1 1176 597 312 97 31 chr5 77565066 77565324 -74971935 - Tigger7 DNA MER2_type -2206 285 11 1 1176 2498 122 25 50 chr5 77565600 77566039 -74971220 - RLTR23 LTR ERV1 0 430 3 1 1176 457 261 52 44 chr5 77567901 77568037 -74969222 - B4A SINE B4 -74 218 82 1 1176 337 320 50 0 chr5 77568083 77568183 -74969076 - MLT2C1 LTR ERVL -290 107 3 1 1176 383 351 41 29 chr5 77568384 77568554 -74968705 + MLT1E2 LTR MaLR 2 173 -454 1 1176 298 307 67 29 chr5 77568578 77568682 -74968577 + RSINE1 SINE B4 43 150 -15 1 1176 239 310 82 12 chr5 77569147 77569232 -74968027 + MLT1E2 LTR MaLR 293 383 -7 1 1176 279 79 0 0 chr5 77569672 77569710 -74967549 + (TTTCC)n Simple_repeat Simple_repeat 1 38 0 1 1176 431 246 9 9 chr5 77569710 77569825 -74967434 - PB1D10 SINE Alu -1 116 2 1 1176 252 86 0 0 chr5 77570014 77570049 -74967210 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 1 1176 460 248 4 4 chr5 77570093 77570352 -74966907 + (TG)n Simple_repeat Simple_repeat 1 259 0 1 1176 221 182 0 18 chr5 77570740 77570796 -74966463 + CT-rich Low_complexity Low_complexity 2 56 0 1 1176 1679 31 0 0 chr5 77570899 77571091 -74966168 - B2_Mm1t SINE B2 -1 192 1 1 1176 209 179 0 0 chr5 77571256 77571295 -74965964 + G-rich Low_complexity Low_complexity 1 39 0 1 1176 2981 68 17 27 chr5 77571336 77571747 -74965512 + MTB_Mm LTR MaLR 1 407 0 1 1176 271 271 179 0 chr5 77571778 77571898 -74965361 + L1MD3 LINE L1 7860 7982 -13 1 1176 958 212 33 19 chr5 77571901 77572112 -74965147 + B3 SINE B2 2 215 -1 1 1176 222 277 39 125 chr5 77572176 77572304 -74964955 + MIRc SINE MIR 17 133 -135 1 1176 301 286 0 11 chr5 77572514 77572691 -74964568 + (TG)n Simple_repeat Simple_repeat 1 175 0 1 1176 486 238 48 120 chr5 77572750 77572917 -74964342 - B4A SINE B4 0 292 138 1 1176 402 198 117 0 chr5 77572879 77572990 -74964269 - ORR1D2 LTR MaLR -246 124 1 1 1176 235 295 12 37 chr5 77573110 77573191 -74964068 + ID4 SINE ID 4 82 -1 1 1176 479 203 196 33 chr5 77573389 77573542 -74963717 - MTE2a LTR MaLR -3 376 199 1 1176 1204 61 0 0 chr5 77573563 77573710 -74963549 + B1_Mus1 SINE Alu 2 148 0 1 1176 857 198 143 46 chr5 77573800 77574017 -74963242 + RLTR30 LTR ERV1 135 372 -7 1 1176 263 281 191 0 chr5 77574303 77574392 -74962867 + PB1D10 SINE Alu 5 110 -7 1 1176 397 377 66 0 chr5 77575482 77575665 -74961594 - LTR16A LTR ERVL -118 333 139 1 1176 1516 196 158 3 chr5 77576587 77576909 -74960350 + ORR1D1 LTR MaLR 3 374 0 1 1176 1063 274 32 70 chr5 77577076 77577445 -74959814 - ORR1E LTR MaLR 0 359 5 1 1176 403 237 13 0 chr5 77577475 77577551 -74959708 - ID SINE ID -146 78 2 1 1176 292 296 39 46 chr5 77577790 77577894 -74959365 + B1F SINE Alu 1 99 -21 1 1176 7728 70 10 1 chr5 77577894 77579308 -74957951 + L1_Mus1 LINE L1 5102 6533 -34 1 1176 1265 34 0 0 chr5 77579460 77579607 -74957652 + B1_Mm SINE Alu 1 147 0 1 1176 1263 94 0 0 chr5 77579612 77579792 -74957467 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1176 400 290 24 12 chr5 77580613 77580740 -74956519 + MTD-int LTR MaLR 1152 1254 -4 1 1176 1009 183 354 33 chr5 77580750 77581015 -74956244 + MTD LTR MaLR 25 379 -40 1 1176 723 255 134 110 chr5 77581015 77581380 -74955879 + ORR1D1 LTR MaLR 1 374 0 1 1176 358 258 37 75 chr5 77581380 77581426 -74955833 + MTD LTR MaLR 380 419 0 1 1176 255 319 71 63 chr5 77581428 77581555 -74955704 - MLT1F2 LTR MaLR -185 468 341 1 1176 209 148 0 32 chr5 77581556 77581619 -74955640 + (CAGAGA)n Simple_repeat Simple_repeat 2 62 0 1 1176 355 362 89 17 chr5 77581625 77581805 -74955454 - MLT1F2 LTR MaLR -338 222 30 1 1176 204 200 0 0 chr5 77582034 77582069 -74955190 + (CAT)n Simple_repeat Simple_repeat 2 36 0 1 1176 429 20 0 0 chr5 77582076 77582126 -74955133 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1176 464 252 191 43 chr5 77582132 77582273 -74954986 - RSINE1 SINE B4 -2 163 2 1 1176 216 0 0 0 chr5 77583316 77583340 -74953919 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1176 202 284 60 0 chr5 77584284 77584351 -74952908 - L2b LINE L2 -15 3360 3290 1 1176 297 370 93 0 chr5 77584421 77584529 -74952730 - MIRb SINE MIR -35 233 116 1 1176 273 294 35 0 chr5 77585380 77585465 -74951794 + L1M4 LINE L1 5518 5605 -569 1 1176 479 149 33 44 chr5 77585486 77585577 -74951682 + B1_Mur1 SINE Alu 46 135 -14 1 1176 424 295 9 0 chr5 77585632 77585744 -74951515 + PB1D10 SINE Alu 1 113 -4 1 1176 720 33 0 0 chr5 77585799 77585890 -74951369 + (TG)n Simple_repeat Simple_repeat 1 91 0 1 1176 745 341 171 33 chr5 77587819 77588746 -74948513 + Arthur1 DNA Tip100 82 1136 -2811 1 1176 455 228 119 0 chr5 77588872 77588973 -74948286 - B1_Mur1 SINE Alu 0 149 37 1 1176 1223 101 0 6 chr5 77588981 77589150 -74948109 - B2_Mm2 SINE B2 -25 170 3 1 1176 186 43 0 0 chr5 77589469 77589492 -74947767 + (GGGAA)n Simple_repeat Simple_repeat 3 25 0 1 1176 727 68 10 102 chr5 77589640 77589836 -74947423 + CT-rich Low_complexity Low_complexity 3 180 0 1 1176 258 105 0 0 chr5 77589841 77589879 -74947380 + (TTTCC)n Simple_repeat Simple_repeat 3 40 0 1 1176 1179 68 0 0 chr5 77589883 77590029 -74947230 - B1_Mus1 SINE Alu 0 148 3 1 1176 1186 75 0 0 chr5 77590133 77590280 -74946979 + B1_Mus1 SINE Alu 2 148 0 1 1176 440 262 71 22 chr5 77590309 77590492 -74946767 - L1MA6 LINE L1 -26 6274 6083 1 1176 1860 128 17 114 chr5 77590727 77591087 -74946172 + ORR1A4 LTR MaLR 1 325 -4 1 1176 2477 78 19 0 chr5 77591296 77591617 -74945642 - ORR1A2 LTR MaLR 0 327 1 1 1176 22 35 0 0 chr5 77591913 77591942 -74945317 + AT_rich Low_complexity Low_complexity 1 29 0 1 1176 683 251 120 78 chr5 77591949 77591986 -74945273 - B4 SINE B4 -38 254 214 1 1176 666 37 0 0 chr5 77591986 77592067 -74945192 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 1 1176 683 251 120 78 chr5 77592067 77592271 -74944988 - B4 SINE B4 -79 213 3 1 1176 23 0 0 0 chr5 77592667 77592690 -74944569 + GC_rich Low_complexity Low_complexity 1 23 0 1 1176 401 226 50 50 chr5 77592882 77593022 -74944237 - MLT1A0 LTR MaLR -224 141 2 1 1176 359 215 237 19 chr5 77593058 77593161 -74944098 + PB1D10 SINE Alu 2 123 -4 1 1176 277 314 105 0 chr5 77593201 77593306 -74943953 - MLT1C LTR MaLR 0 467 352 1 1176 275 335 97 51 chr5 77593407 77593624 -74943635 - MLT1C LTR MaLR -278 227 1 1 1176 464 309 30 65 chr5 77593796 77593997 -74943262 + B3A SINE B2 1 194 -4 1 1177 932 49 8 0 chr5 77595038 77595160 -74942099 + (TTTC)n Simple_repeat Simple_repeat 4 126 0 1 1177 407 250 11 0 chr5 77595434 77595522 -74941737 + RSINE1 SINE B4 56 144 -21 1 1177 605 183 7 0 chr5 77595576 77595729 -74941530 + (CA)n Simple_repeat Simple_repeat 1 154 0 1 1177 756 176 16 0 chr5 77595892 77596017 -74941242 + B1_Mur1 SINE Alu 23 149 0 1 1177 463 316 20 22 chr5 77596155 77596354 -74940905 - B3A SINE B2 -3 213 19 2 1177 1215 119 0 6 chr5 77597494 77597671 -74939588 - B2_Mm2 SINE B2 -18 177 2 2 1177 495 225 14 7 chr5 77597688 77597827 -74939432 - Lx9 LINE L1 -6 7638 7499 2 1177 2976 194 40 22 chr5 77597853 77598496 -74938763 - Lx9 LINE L1 -264 7380 6726 2 1177 272 307 0 0 chr5 77598862 77598937 -74938322 - MLT1H LTR MaLR -342 207 133 2 1177 4092 41 2 2 chr5 77599252 77599740 -74937519 - L1Md_F2 LINE L1 0 6582 6095 2 1177 278 263 56 171 chr5 77599957 77600173 -74937086 + MLT1H LTR MaLR 78 268 -287 2 1177 256 217 0 0 chr5 77600246 77600292 -74936967 - PB1D7 SINE Alu -12 108 63 2 1177 368 98 32 16 chr5 77600301 77600363 -74936896 + B1F SINE Alu 76 138 -11 2 1177 454 193 24 24 chr5 77600363 77600533 -74936726 + (TA)n Simple_repeat Simple_repeat 1 170 0 2 1177 613 264 44 30 chr5 77600825 77601028 -74936231 + B3 SINE B2 3 208 -8 2 1177 232 222 15 73 chr5 77601123 77601191 -74936068 - B1F SINE Alu -12 137 74 2 1177 251 156 44 0 chr5 77601179 77601224 -74936035 + B1F SINE Alu 77 123 -26 2 1177 1155 39 0 43 chr5 77601360 77601548 -74935711 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1177 541 240 0 46 chr5 77601549 77601680 -74935579 + ID_B1 SINE B4 100 224 0 2 1177 794 115 273 0 chr5 77601751 77601890 -74935369 + B2_Mm1t SINE B2 3 179 -14 2 1177 344 165 364 9 chr5 77601941 77602051 -74935208 + B2_Mm2 SINE B2 47 195 0 2 1177 495 87 0 0 chr5 77602051 77602120 -74935139 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 2 1177 782 229 0 0 chr5 77602140 77602284 -74934975 + B1_Mur1 SINE Alu 1 144 -5 2 1177 793 258 128 84 chr5 77602823 77603137 -74934122 - ORR1E LTR MaLR -5 374 27 2 1177 2659 171 116 0 chr5 77603137 77603611 -74933648 + MT2A LTR ERVL 1 529 -4 2 1177 793 258 136 87 chr5 77603611 77603642 -74933617 - ORR1E LTR MaLR -333 26 1 2 1177 224 271 165 0 chr5 77603800 77603885 -74933374 - MIRm SINE MIR -1 275 177 2 1177 1112 95 113 0 chr5 77604339 77604507 -74932752 + B2_Mm2 SINE B2 3 189 -6 2 1177 197 383 51 74 chr5 77605592 77605678 -74931581 + L2 LINE L2 2328 2405 -1014 2 1177 3021 62 28 3 chr5 77605678 77606068 -74931191 - MTB LTR MaLR 0 400 1 2 1177 197 383 51 74 chr5 77606068 77606156 -74931103 + L2 LINE L2 2406 2498 -921 2 1177 248 164 53 35 chr5 77607518 77607575 -74929684 - MLT1A0 LTR MaLR -27 440 383 2 1177 347 248 153 54 chr5 77607696 77607807 -74929452 - MLT1A0 LTR MaLR -235 130 9 2 1177 1235 41 7 0 chr5 77607866 77608013 -74929246 - B1_Mus1 SINE Alu 0 148 1 2 1177 994 139 23 17 chr5 77608309 77608485 -74928774 + B2_Mm2 SINE B2 1 177 -18 2 1177 249 294 56 45 chr5 77608600 77608618 -74928641 + MT2B2 LTR ERVL 152 170 -414 2 1177 422 260 106 0 chr5 77608618 77608722 -74928537 + PB1D10 SINE Alu 2 116 -1 2 1177 282 270 152 9 chr5 77609392 77609504 -74927755 + MLT1B LTR MaLR 3 130 -260 2 1177 1418 90 16 0 chr5 77609533 77609722 -74927537 - B2_Mm2 SINE B2 -2 193 2 2 1177 239 288 216 0 chr5 77609740 77609865 -74927394 + MLT1B LTR MaLR 222 373 -1 2 1177 1254 81 0 0 chr5 77609879 77610051 -74927208 + (TTC)n Simple_repeat Simple_repeat 1 172 0 2 1177 500 322 68 59 chr5 77610051 77610272 -74926987 + ID_B1 SINE B4 2 224 0 2 1177 180 0 0 0 chr5 77610278 77610298 -74926961 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 2 1177 252 269 11 103 chr5 77611295 77611357 -74925902 - B1F SINE Alu -47 102 46 2 1177 2290 142 36 16 chr5 77611357 77611742 -74925517 + ORR1B1 LTR MaLR 1 393 -1 2 1177 252 269 11 103 chr5 77611742 77611766 -74925493 - B1F SINE Alu -104 45 24 2 1177 957 149 82 20 chr5 77611841 77612048 -74925211 - ORR1C2 LTR MaLR 0 384 159 2 1177 323 198 0 54 chr5 77612050 77612162 -74925097 + G-rich Low_complexity Low_complexity 6 111 0 2 1177 1194 107 0 0 chr5 77612163 77612340 -74924919 + (GGA)n Simple_repeat Simple_repeat 2 178 0 2 1177 599 25 76 8 chr5 77612340 77612459 -74924800 + (GAA)n Simple_repeat Simple_repeat 2 128 0 2 1177 836 138 18 185 chr5 77612475 77612697 -74924562 - ORR1C2 LTR MaLR -199 185 1 2 1177 230 304 25 0 chr5 77612881 77612960 -74924299 - ID4_ SINE ID -2 81 1 2 1177 2705 99 28 20 chr5 77613073 77613473 -74923786 + RLTR9D LTR ERVK 1 403 0 2 1177 1112 268 60 28 chr5 77613634 77613987 -74923272 - ORR1D2 LTR MaLR -6 364 1 2 1177 331 257 0 14 chr5 77614130 77614200 -74923059 + ID_B1 SINE B4 86 154 -70 2 1177 1472 243 128 20 chr5 77614200 77614472 -74922787 - RMER5 LTR ERV1 0 534 222 2 1177 2225 145 37 32 chr5 77614472 77614877 -74922382 + MTB_Mm LTR MaLR 1 407 0 2 1177 1472 243 128 20 chr5 77614877 77615057 -74922202 - RMER5 LTR ERV1 -313 221 33 2 1177 306 295 0 13 chr5 77615184 77615263 -74921996 + ID2 SINE ID 4 81 -2 2 1177 315 274 0 27 chr5 77615383 77615458 -74921801 - MER81 DNA AcHobo -21 93 21 2 1177 406 278 56 0 chr5 77615821 77615911 -74921348 - ID_B1 SINE B4 -32 192 98 2 1177 326 297 129 0 chr5 77615911 77615922 -74921337 - B1F SINE Alu -35 114 1 2 1177 294 254 50 76 chr5 77615925 77616044 -74921215 + MLT1B LTR MaLR 90 205 -185 2 1177 1334 157 4 26 chr5 77616045 77616274 -74920985 - URR1B DNA MER1_type -1 224 1 2 1177 310 296 31 45 chr5 77616346 77616480 -74920779 + MER5A1 DNA MER1_type 9 134 -32 2 1177 274 315 128 41 chr5 77616847 77616916 -74920343 - ORR1E LTR MaLR -169 190 112 2 1177 288 102 0 0 chr5 77616916 77616965 -74920294 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1177 274 315 128 41 chr5 77616965 77617067 -74920192 - ORR1E LTR MaLR -248 111 4 2 1177 1659 203 119 121 chr5 77617256 77617912 -74919347 - RMER12B LTR ERVK -129 1275 654 2 1177 811 230 179 47 chr5 77617912 77618209 -74919050 + RLTR9A LTR ERVK 1 336 -32 2 1177 315 146 0 0 chr5 77618235 77618283 -74918976 - RMER12B LTR ERVK -784 538 491 2 1177 318 143 0 0 chr5 77618283 77618331 -74918928 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 2 1177 1214 61 0 0 chr5 77618331 77618479 -74918780 - B1_Mus1 SINE Alu 0 148 1 2 1177 318 143 0 0 chr5 77618479 77618486 -74918773 + (TTTC)n Simple_repeat Simple_repeat 3 9 0 2 1177 2942 158 82 95 chr5 77618489 77619089 -74918170 - RMER12B LTR ERVK -801 603 12 2 1177 3288 38 13 2 chr5 77619461 77619857 -74917402 + MTB LTR MaLR 1 400 0 2 1177 1172 180 33 0 chr5 77619993 77620204 -74917055 - URR1B DNA MER1_type 0 225 8 2 1177 787 288 0 0 chr5 77620933 77621079 -74916180 + RSINE1 SINE B4 4 149 -16 2 1177 363 44 0 0 chr5 77621081 77621126 -74916133 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1177 514 128 28 0 chr5 77622561 77622670 -74914589 - L1_Mus3 LINE L1 0 6638 6527 2 1177 638 270 23 41 chr5 77623085 77623305 -74913954 - B3 SINE B2 0 216 1 2 1177 270 0 0 0 chr5 77623377 77623407 -74913852 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 2 1177 590 293 0 0 chr5 77623470 77623634 -74913625 + Lx7 LINE L1 7151 7314 -382 2 1177 686 173 72 36 chr5 77623730 77623868 -74913391 - B1_Mur3 SINE Alu -6 143 1 2 1177 199 93 47 0 chr5 77623874 77623917 -74913342 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2 1177 486 190 86 8 chr5 77624012 77624129 -74913130 - ID_B1 SINE B4 0 224 99 2 1177 288 250 85 19 chr5 77624164 77624270 -74912989 - Lx8 LINE L1 0 7473 7361 2 1177 639 140 181 14 chr5 77624702 77624840 -74912419 + RMER16 LTR ERVK 241 401 -132 2 1177 1643 36 0 0 chr5 77624929 77625122 -74912137 - B2_Mm1a SINE B2 0 193 1 2 1177 1112 109 52 37 chr5 77625349 77625540 -74911719 - B2_Mm2 SINE B2 0 195 2 2 1177 483 258 83 0 chr5 77626159 77626279 -74910980 - B1F SINE Alu -1 148 19 2 1177 1130 83 0 0 chr5 77626331 77626476 -74910783 + B1_Mm SINE Alu 2 146 -1 2 1177 668 138 0 8 chr5 77626613 77626730 -74910529 + (TTC)n Simple_repeat Simple_repeat 1 116 0 2 1177 1331 96 26 5 chr5 77626731 77626920 -74910339 - B2_Mm2 SINE B2 -2 193 1 2 1177 188 67 33 0 chr5 77626931 77626961 -74910298 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 2 1177 619 236 26 41 chr5 77627063 77627257 -74910002 + B3A SINE B2 3 193 -5 2 1177 803 188 14 28 chr5 77627298 77627440 -74909819 - B1_Mur2 SINE Alu -1 148 9 2 1177 2133 149 39 47 chr5 77627842 77628249 -74909010 + MTB_Mm LTR MaLR 3 406 -1 2 1177 745 236 7 0 chr5 77628372 77628520 -74908739 + B1_Mur4 SINE Alu 2 150 0 2 1177 215 79 0 26 chr5 77628525 77628564 -74908695 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2 1177 281 155 17 0 chr5 77628786 77628844 -74908415 + (CCCCAG)n Simple_repeat Simple_repeat 2 60 0 2 1177 249 196 0 0 chr5 77629357 77629408 -74907851 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 1177 963 203 72 22 chr5 77629408 77629589 -74907670 - B3 SINE B2 -2 214 25 2 1177 1003 108 0 45 chr5 77629681 77629836 -74907423 + B1_Mur4 SINE Alu 3 150 0 2 1177 1240 92 0 11 chr5 77630323 77630499 -74906760 - B2_Mm2 SINE B2 -20 175 2 2 1177 1241 98 11 6 chr5 77630766 77630941 -74906318 + B2_Mm1t SINE B2 4 179 -14 2 1177 373 157 12 0 chr5 77630954 77631017 -74906242 + B2_Mm2 SINE B2 47 115 -83 2 1177 23 0 0 0 chr5 77631032 77631055 -74906204 + AT_rich Low_complexity Low_complexity 1 23 0 2 1177 477 50 0 0 chr5 77631249 77631309 -74905950 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 2 1177 1132 96 123 18 chr5 77631350 77631520 -74905739 + B2_Mm2 SINE B2 2 189 -6 2 1177 4381 34 0 0 chr5 77632383 77632887 -74904372 - L1Md_T LINE L1 0 6582 6079 2 1177 318 123 0 0 chr5 77633072 77633129 -74904130 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1177 475 236 31 92 chr5 77633195 77633358 -74903901 + ID_B1 SINE B4 1 153 -71 2 1177 272 236 144 82 chr5 77633286 77633383 -74903876 + PB1D10 SINE Alu 9 111 -6 2 1177 217 0 29 29 chr5 77633395 77633429 -74903830 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1177 332 286 85 39 chr5 77633934 77634087 -74903172 + MER34 LTR ERV1 369 528 -14 3 1177 423 0 0 0 chr5 77634646 77634693 -74902566 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1177 273 292 14 0 chr5 77635045 77635117 -74902142 - ID4_ SINE ID -10 73 1 3 1177 348 278 0 0 chr5 77635133 77635213 -74902046 - ID4 SINE ID -62 90 11 3 1177 1294 94 6 11 chr5 77635411 77635594 -74901665 + B2_Mm1t SINE B2 4 185 -8 3 1177 851 171 89 22 chr5 77635739 77635918 -74901341 + B3 SINE B2 26 216 0 3 1177 603 232 0 92 chr5 77636280 77636432 -74900827 + B1F SINE Alu 12 149 0 3 1177 468 231 92 9 chr5 77636495 77636604 -74900655 + ID_B1 SINE B4 107 224 0 3 1177 245 51 0 25 chr5 77636604 77636644 -74900615 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1177 439 193 183 8 chr5 77636801 77636921 -74900338 - B1_Mur1 SINE Alu -8 141 1 3 1177 351 126 29 86 chr5 77636921 77637316 -74899943 + (CACAC)n Simple_repeat Simple_repeat 1 372 0 3 1177 1440 83 0 5 chr5 77637468 77637662 -74899597 + B2_Mm2 SINE B2 3 195 0 3 1177 973 249 159 8 chr5 77638026 77638403 -74898856 + MER89 LTR ERV1 126 559 0 3 1177 246 300 13 67 chr5 77638545 77638656 -74898603 + B1F SINE Alu 6 110 -7 3 1177 540 0 0 0 chr5 77638940 77639000 -74898259 + (GA)n Simple_repeat Simple_repeat 1 60 0 3 1177 861 209 136 16 chr5 77639016 77639259 -74898000 + B4A SINE B4 3 274 -18 3 1177 468 0 0 0 chr5 77639267 77639319 -74897940 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1177 467 246 0 97 chr5 77639638 77639731 -74897528 - ID_B1 SINE B4 -8 216 137 3 1177 1643 21 21 0 chr5 77639731 77639919 -74897340 - B2_Mm1t SINE B2 0 193 2 3 1177 467 246 0 97 chr5 77639919 77639969 -74897290 - ID_B1 SINE B4 -88 136 87 3 1177 219 333 0 64 chr5 77640488 77640629 -74896630 + G-rich Low_complexity Low_complexity 4 135 0 3 1177 226 286 0 28 chr5 77640534 77640606 -74896653 + GA-rich Low_complexity Low_complexity 1 70 0 3 1177 276 154 0 0 chr5 77640629 77640681 -74896578 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1177 413 210 0 7 chr5 77641692 77641831 -74895428 + (CA)n Simple_repeat Simple_repeat 1 138 0 3 1177 746 189 0 29 chr5 77641867 77642003 -74895256 + B1_Mus2 SINE Alu 16 147 0 3 1177 560 229 60 15 chr5 77642570 77642703 -74894556 + B1_Mur1 SINE Alu 2 140 -9 3 1177 557 282 14 0 chr5 77642730 77642872 -74894387 + ID_B1 SINE B4 73 216 -8 3 1177 347 330 0 37 chr5 77642979 77643086 -74894173 + B1_Mur1 SINE Alu 31 133 -16 3 1177 387 0 0 0 chr5 77643146 77643189 -74894070 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1177 2733 195 28 6 chr5 77643412 77643949 -74893310 - MTC-int LTR MaLR -708 550 2 3 1177 2580 130 35 10 chr5 77643952 77644355 -74892904 - MTC LTR MaLR -8 413 1 3 1177 559 215 90 8 chr5 77644453 77644575 -74892684 + B1F SINE Alu 5 136 -13 3 1177 471 90 0 0 chr5 77644575 77644653 -74892606 + (TTTC)n Simple_repeat Simple_repeat 2 79 0 3 1177 525 170 30 10 chr5 77644718 77644819 -74892440 + PB1D9 SINE Alu 18 120 0 3 1177 390 42 0 0 chr5 77644819 77644867 -74892392 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 3 1177 1170 48 0 58 chr5 77644980 77645136 -74892123 + B1_Mus2 SINE Alu 1 147 0 3 1177 290 257 93 28 chr5 77645198 77645306 -74891953 + Lx8 LINE L1 6903 7017 -456 3 1177 624 285 9 80 chr5 77645807 77646032 -74891227 + Lx8 LINE L1 6575 6783 -690 3 1177 189 107 0 0 chr5 77646129 77646157 -74891102 + (TTA)n Simple_repeat Simple_repeat 2 29 0 3 1177 371 302 37 25 chr5 77646161 77646324 -74890935 + Lx8 LINE L1 6850 7014 -459 3 1177 716 272 0 62 chr5 77646327 77646554 -74890705 + B3 SINE B2 1 213 -3 3 1177 993 56 0 0 chr5 77646567 77646692 -74890567 + B1_Mus2 SINE Alu 14 138 -9 3 1177 21 0 0 0 chr5 77646692 77646713 -74890546 + GC_rich Low_complexity Low_complexity 1 21 0 3 1177 345 159 0 0 chr5 77646742 77646805 -74890454 + GA-rich Low_complexity Low_complexity 2 64 0 3 1177 344 316 0 0 chr5 77646822 77646917 -74890342 + Lx8 LINE L1 7019 7113 -360 3 1177 940 164 21 10 chr5 77647781 77647952 -74889307 - ORR1B2 LTR MaLR 0 419 214 3 1177 226 65 0 0 chr5 77648285 77648316 -74888943 - RMER19C LTR ERVK 0 611 581 3 1177 322 67 0 0 chr5 77648326 77648371 -74888888 - B2_Mm1a SINE B2 -22 171 127 3 1177 360 0 0 0 chr5 77648442 77648482 -74888777 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 3 1177 1151 102 0 0 chr5 77648483 77648640 -74888619 - B2_Mm2 SINE B2 -37 158 2 3 1177 1562 208 23 255 chr5 77648640 77649383 -74887876 - RMER19C LTR ERVK -18 593 24 3 1177 2091 174 83 12 chr5 77649745 77649836 -74887423 - RLTR16 LTR ERVK 0 505 415 3 1177 390 129 0 0 chr5 77649836 77649898 -74887361 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1177 2091 174 83 12 chr5 77649898 77650226 -74887033 - RLTR16 LTR ERVK -91 414 57 3 1177 1192 41 7 7 chr5 77650247 77650394 -74886865 - B1_Mm SINE Alu 0 147 1 3 1177 712 260 70 63 chr5 77650717 77651031 -74886228 + RLTR42-int LTR ERVK 1128 1345 -4177 3 1177 253 204 0 0 chr5 77651021 77651070 -74886189 + RLTR42-int LTR ERVK 1486 1534 -3988 3 1177 363 44 0 0 chr5 77651291 77651336 -74885923 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 3 1177 955 161 152 27 chr5 77651365 77651589 -74885670 + RLTR14-int LTR ERV1 1018 1269 -4048 3 1177 1214 212 122 26 chr5 77651974 77652326 -74884933 + RMER1B Other Other 1 450 -616 3 1177 794 150 27 56 chr5 77652411 77652586 -74884673 + B2_Mm2 SINE B2 2 180 -36 3 1177 1341 61 77 6 chr5 77652918 77653100 -74884159 + B2_Mm2 SINE B2 1 195 0 3 1177 246 62 0 0 chr5 77653496 77653528 -74883731 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 3 1177 1319 64 11 11 chr5 77653528 77653702 -74883557 - B2_Mm2 SINE B2 -19 176 3 3 1177 362 281 24 0 chr5 77653746 77653828 -74883431 + Lx8 LINE L1 7212 7295 -178 3 1177 1616 52 0 0 chr5 77653890 77654081 -74883178 + B2_Mm1a SINE B2 2 192 -1 3 1177 251 339 104 19 chr5 77654106 77654175 -74883084 + RSINE1 SINE B4 7 74 -91 3 1177 258 32 0 0 chr5 77654175 77654206 -74883053 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1177 232 337 110 20 chr5 77654206 77654240 -74883019 + B4 SINE B4 75 117 -175 3 1177 1151 172 33 33 chr5 77654243 77654453 -74882806 + URR1A DNA MER1_type 1 210 -16 3 1177 797 194 0 0 chr5 77654635 77654769 -74882490 - B1_Mur1 SINE Alu -13 136 3 3 1177 638 234 12 65 chr5 77654781 77654950 -74882309 + B3A SINE B2 39 198 0 3 1177 1258 48 0 0 chr5 77654970 77655115 -74882144 - B1_Mm SINE Alu -1 146 2 3 1177 382 298 0 23 chr5 77655134 77655220 -74882039 + RSINE1 SINE B4 82 165 0 3 1177 27 0 0 0 chr5 77655238 77655265 -74881994 + AT_rich Low_complexity Low_complexity 1 27 0 3 1177 514 277 87 111 chr5 77655270 77655453 -74881806 + B3 SINE B2 4 165 -51 3 1177 219 69 0 0 chr5 77655453 77655482 -74881777 + (CATA)n Simple_repeat Simple_repeat 2 30 0 3 1177 514 277 87 111 chr5 77655482 77655505 -74881754 + B3 SINE B2 166 203 -13 3 1177 847 175 0 14 chr5 77655527 77655666 -74881593 + B1_Mur2 SINE Alu 12 148 -1 3 1177 453 200 60 100 chr5 77655957 77655977 -74881282 + B4A SINE B4 74 217 -75 3 1177 1043 54 0 0 chr5 77655977 77656107 -74881152 + B1_Mus1 SINE Alu 9 138 -10 3 1177 731 42 11 0 chr5 77656114 77656209 -74881050 + (GAGAA)n Simple_repeat Simple_repeat 4 99 0 3 1177 243 0 0 0 chr5 77656265 77656292 -74880967 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1177 940 152 132 32 chr5 77657126 77657316 -74879943 - Lx7 LINE L1 -835 6861 6653 3 1177 405 0 0 0 chr5 77657316 77657361 -74879898 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1177 1443 51 6 6 chr5 77657361 77657540 -74879719 - B2_Mm2 SINE B2 -15 180 2 3 1177 386 39 19 0 chr5 77657541 77657593 -74879666 + (TC)n Simple_repeat Simple_repeat 1 53 0 3 1177 366 23 0 0 chr5 77657593 77657636 -74879623 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1177 1431 68 10 40 chr5 77657865 77658064 -74879195 - B2_Mm2 SINE B2 -1 194 2 3 1177 27 0 0 0 chr5 77658320 77658347 -74878912 + AT_rich Low_complexity Low_complexity 1 27 0 3 1177 447 236 100 0 chr5 77658355 77658465 -74878794 - ID_B1 SINE B4 -2 222 102 3 1177 383 275 38 107 chr5 77658465 77658510 -74878749 - B1F1 SINE Alu -1 144 1 3 1177 6065 58 1 13 chr5 77658630 77659393 -74877866 + L1_Mus1 LINE L1 5814 6567 0 3 1177 771 162 0 0 chr5 77659424 77659541 -74877718 + B1_Mur1 SINE Alu 25 141 -8 3 1177 784 172 0 0 chr5 77659687 77659821 -74877438 + ORR1D1 LTR MaLR 1 134 -240 3 1177 1107 96 0 0 chr5 77659848 77659994 -74877265 - B1_Mus2 SINE Alu 0 147 2 3 1177 288 0 0 0 chr5 77660033 77660065 -74877194 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 1177 945 228 22 49 chr5 77660065 77660252 -74877007 + ORR1D1 LTR MaLR 155 343 -31 3 1177 1918 111 5 154 chr5 77660252 77660324 -74876935 - ORR1A2 LTR MaLR -2 325 285 3 1177 1054 68 0 58 chr5 77660324 77660480 -74876779 - B1_Mus1 SINE Alu 0 148 2 3 1177 1918 111 5 154 chr5 77660480 77660686 -74876573 - ORR1A2 LTR MaLR -43 284 80 3 1177 1172 70 0 0 chr5 77660686 77660829 -74876430 + B1_Mm SINE Alu 1 143 -4 3 1177 1918 111 5 154 chr5 77660829 77660931 -74876328 - ORR1A2 LTR MaLR -248 79 1 3 1177 945 228 22 49 chr5 77660931 77660969 -74876290 + ORR1D1 LTR MaLR 344 374 0 3 1177 351 261 50 207 chr5 77661039 77661151 -74876108 - MER57C2 LTR ERV1 -235 199 119 3 1177 1210 21 21 0 chr5 77661151 77661293 -74875966 - B1_Mm SINE Alu -1 146 2 3 1177 351 261 50 207 chr5 77661293 77661402 -74875857 - MER57C2 LTR ERV1 -316 118 13 3 1177 549 257 233 15 chr5 77661443 77661713 -74875546 + RMER5 LTR ERV1 206 534 0 3 1177 254 193 35 0 chr5 77661766 77661823 -74875436 - B1F2 SINE Alu -90 59 1 3 1177 1418 82 0 15 chr5 77661827 77662025 -74875234 - B2_Mm2 SINE B2 0 195 1 3 1177 1377 101 5 0 chr5 77662142 77662331 -74874928 + B2_Mm1a SINE B2 3 192 -1 3 1177 312 27 0 0 chr5 77662345 77662382 -74874877 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 3 1177 204 40 0 0 chr5 77662406 77662431 -74874828 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1177 181 364 57 0 chr5 77662594 77662682 -74874577 - L2c LINE L2 -12 3375 3283 4 1177 1122 36 0 28 chr5 77663227 77663369 -74873890 - B2_Mm2 SINE B2 -57 138 1 4 1177 210 71 0 0 chr5 77663369 77663397 -74873862 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1177 425 208 27 150 chr5 77663397 77663419 -74873840 - ID_B1 SINE B4 0 224 96 4 1177 725 149 32 32 chr5 77663419 77663544 -74873715 - B1_Mur2 SINE Alu -10 139 15 4 1177 1054 31 39 0 chr5 77663688 77663816 -74873443 - B1_Mm SINE Alu -14 133 1 4 1177 1678 175 43 25 chr5 77664129 77664528 -74872731 + RMER17C LTR ERVK 3 408 -2 4 1177 1202 123 21 11 chr5 77664653 77664842 -74872417 + B2_Mm2 SINE B2 2 192 -3 4 1177 908 66 91 0 chr5 77664848 77664969 -74872290 + B1_Mus2 SINE Alu 2 133 -14 4 1177 345 293 143 35 chr5 77664984 77665295 -74871964 - MLT1F1 LTR MaLR -148 412 66 4 1177 833 175 0 28 chr5 77665423 77665564 -74871695 - B1_Mur1 SINE Alu -2 147 11 4 1177 641 142 2 32 chr5 77665590 77665709 -74871550 + B3 SINE B2 1 115 -78 4 1177 374 241 11 0 chr5 77665763 77665850 -74871409 + RLTR41 LTR ERV1 200 287 -159 4 1177 1044 38 83 0 chr5 77665867 77665999 -74871260 + B1_Mus1 SINE Alu 1 143 -5 4 1177 484 172 98 63 chr5 77666036 77666179 -74871080 + B1_Mur1 SINE Alu 2 149 0 4 1177 216 0 0 0 chr5 77666179 77666203 -74871056 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1177 187 125 0 59 chr5 77666203 77666254 -74871005 + G-rich Low_complexity Low_complexity 5 52 0 4 1177 791 207 90 35 chr5 77666265 77666465 -74870794 + B3 SINE B2 3 213 -3 4 1177 189 0 0 0 chr5 77666486 77666507 -74870752 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1177 370 284 0 0 chr5 77666525 77666606 -74870653 + B3 SINE B2 36 116 -100 4 1177 1392 84 17 0 chr5 77666656 77666834 -74870425 + B2_Mm2 SINE B2 1 181 -14 4 1177 474 18 0 0 chr5 77666834 77666889 -74870370 + (GAA)n Simple_repeat Simple_repeat 1 55 0 4 1177 225 108 289 47 chr5 77667659 77667735 -74869524 + B1_Mur2 SINE Alu 63 149 0 4 1177 575 252 0 0 chr5 77667780 77667895 -74869364 + ID_B1 SINE B4 108 222 -2 4 1177 458 241 164 76 chr5 77668008 77668179 -74869080 - B3A SINE B2 0 198 13 4 1177 636 256 23 73 chr5 77668596 77668691 -74868568 - B3 SINE B2 -5 211 120 4 1177 198 0 0 0 chr5 77668691 77668713 -74868546 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1177 636 256 23 73 chr5 77668713 77668836 -74868423 - B3 SINE B2 -97 119 4 4 1177 346 200 0 16 chr5 77668836 77668897 -74868362 - PB1D10 SINE Alu -49 68 9 4 1177 261 0 0 0 chr5 77668999 77669028 -74868231 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1177 686 223 7 39 chr5 77669043 77669197 -74868062 - RSINE1 SINE B4 -14 151 3 4 1177 630 335 26 15 chr5 77669197 77669470 -74867789 - L1M5 LINE L1 -562 5611 5336 4 1177 1242 84 22 27 chr5 77669550 77669733 -74867526 + B2_Mm2 SINE B2 14 195 0 4 1177 334 205 138 152 chr5 77669734 77669768 -74867491 + B3 SINE B2 81 114 -102 4 1177 1165 70 0 7 chr5 77669768 77669913 -74867346 + B1_Mus2 SINE Alu 4 147 0 4 1177 243 0 0 0 chr5 77669920 77669947 -74867312 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4 1177 334 205 138 152 chr5 77669947 77670042 -74867217 + B3 SINE B2 115 216 0 4 1177 442 218 11 11 chr5 77670066 77670154 -74867105 + PB1D7 SINE Alu 4 91 -29 4 1177 217 311 83 93 chr5 77670173 77670389 -74866870 + ID_B1 SINE B4 1 214 -10 4 1177 288 151 123 99 chr5 77670393 77670474 -74866785 + RSINE1 SINE B4 82 164 -1 4 1177 640 146 130 58 chr5 77670603 77670741 -74866518 + B1_Mus1 SINE Alu 1 148 0 4 1177 198 0 0 0 chr5 77670836 77670858 -74866401 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 4 1177 1055 84 14 7 chr5 77670859 77671003 -74866256 - B1_Mus1 SINE Alu -2 146 2 4 1177 695 147 271 0 chr5 77671025 77671195 -74866064 - B3 SINE B2 0 216 1 4 1177 305 264 43 21 chr5 77671613 77671706 -74865553 + MLT1F LTR MaLR 4 98 -450 4 1177 338 294 101 0 chr5 77671727 77671836 -74865423 + ID_B1 SINE B4 99 218 -6 4 1177 296 225 11 46 chr5 77671974 77672061 -74865198 + PB1D10 SINE Alu 33 125 -2 4 1177 245 267 0 32 chr5 77672085 77672147 -74865112 + ID2 SINE ID 6 65 -18 4 1177 1145 93 2 23 chr5 77672168 77672611 -74864648 + (CCA)n Simple_repeat Simple_repeat 1 433 0 4 1177 182 37 37 0 chr5 77672618 77672645 -74864614 + (CACCAT)n Simple_repeat Simple_repeat 1 28 0 4 1177 457 246 43 17 chr5 77672670 77672786 -74864473 + PB1D7 SINE Alu 2 120 0 4 1177 2014 118 47 44 chr5 77672805 77673214 -74864045 + RMER17C LTR ERVK 1 410 0 4 1177 248 327 17 81 chr5 77673374 77673396 -74863863 + YREP_Mm Unknown Unknown 166 263 -1549 4 1177 675 259 7 0 chr5 77673396 77673535 -74863724 - ID_B1 SINE B4 -6 218 79 4 1177 248 327 17 81 chr5 77673535 77673547 -74863712 + YREP_Mm Unknown Unknown 264 327 -1485 4 1177 306 0 0 0 chr5 77673960 77673994 -74863265 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4 1177 476 313 0 13 chr5 77674152 77674301 -74862958 - B1F SINE Alu -2 147 1 4 1177 222 171 0 0 chr5 77674309 77674350 -74862909 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 1177 216 0 0 0 chr5 77674350 77674374 -74862885 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 4 1177 351 66 109 4 chr5 77674388 77674450 -74862809 - B1_Mus1 SINE Alu -83 66 1 4 1177 380 272 49 0 chr5 77674455 77674566 -74862693 - B1F SINE Alu -3 114 1 4 1177 204 40 0 0 chr5 77674630 77674655 -74862604 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 4 1177 925 55 148 0 chr5 77675437 77675565 -74861694 - B1_Mm SINE Alu 0 147 1 4 1177 21 0 0 47 chr5 77675809 77675825 -74861434 + AT_rich Low_complexity Low_complexity 1 16 0 4 1177 1439 72 6 0 chr5 77675825 77676006 -74861253 + B2_Mm1a SINE B2 1 182 -11 4 1177 1155 76 0 0 chr5 77676016 77676161 -74861098 + B1_Mm SINE Alu 1 145 -2 4 1177 21 0 0 47 chr5 77676161 77676176 -74861083 + AT_rich Low_complexity Low_complexity 1 15 0 4 1177 670 135 10 0 chr5 77676176 77676272 -74860987 + B1_Mus1 SINE Alu 9 105 -43 4 1177 686 133 16 96 chr5 77676288 77676413 -74860846 - B1_Mus1 SINE Alu -33 115 1 4 1177 387 209 107 57 chr5 77676502 77676624 -74860635 + RSINE1 SINE B4 3 130 -35 4 1177 951 232 24 9 chr5 77676713 77676926 -74860333 + B3 SINE B2 1 216 0 4 1177 382 241 233 31 chr5 77677029 77677192 -74860067 - B3A SINE B2 -1 197 2 4 1177 237 361 0 12 chr5 77677276 77677360 -74859899 + PB1D10 SINE Alu 2 84 -33 4 1177 3259 108 91 17 chr5 77677365 77677895 -74859364 + MT2B LTR ERVL 1 569 -32 4 1177 1352 73 15 50 chr5 77677946 77678148 -74859111 - B2_Mm2 SINE B2 0 195 1 4 1177 537 27 206 0 chr5 77678154 77678227 -74859032 + B2_Mm2 SINE B2 65 152 -43 4 1177 245 29 0 29 chr5 77678227 77678262 -74858997 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 4 1177 575 202 0 73 chr5 77678271 77678394 -74858865 - B3 SINE B2 -82 134 21 4 1177 267 293 140 43 chr5 77678496 77678731 -74858528 - RMER10A LTR ERVL -25 417 160 4 1177 335 23 0 22 chr5 77678734 77678779 -74858480 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1177 683 93 117 0 chr5 77678779 77678890 -74858369 - B1_Mus1 SINE Alu -10 139 12 4 1177 288 247 49 61 chr5 77678823 77678905 -74858354 + B1_Mus2 SINE Alu 52 132 -15 4 1177 614 136 9 43 chr5 77679567 77679700 -74857559 + B1_Mus1 SINE Alu 1 132 -16 4 1177 293 265 95 5 chr5 77679821 77679929 -74857330 - B1F1 SINE Alu -19 130 12 4 1177 418 316 36 29 chr5 77680042 77680182 -74857077 - B1_Mur1 SINE Alu 0 149 9 4 1177 445 349 32 13 chr5 77680191 77680345 -74856914 - ID_B1 SINE B4 -3 221 65 4 1177 1329 98 11 0 chr5 77680349 77680533 -74856726 - B2_Mm1t SINE B2 -6 187 2 4 1177 21 0 0 0 chr5 77680533 77680554 -74856705 + AT_rich Low_complexity Low_complexity 1 21 0 4 1177 812 265 74 81 chr5 77680597 77680810 -74856449 + RMER10A LTR ERVL 14 222 -220 4 1177 294 29 0 0 chr5 77680810 77680845 -74856414 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1177 812 265 74 81 chr5 77680845 77681050 -74856209 + RMER10A LTR ERVL 223 428 -14 4 1177 604 229 135 98 chr5 77681301 77681513 -74855746 - Lx8 LINE L1 -326 7147 6925 4 1177 1320 51 108 0 chr5 77681513 77681689 -74855570 - B2_Mm2 SINE B2 0 195 1 4 1177 604 229 135 98 chr5 77681689 77681742 -74855517 - Lx8 LINE L1 -549 6924 6872 4 1177 458 227 5 37 chr5 77681764 77681880 -74855379 - B1_Mur1 SINE Alu 0 149 37 4 1177 1013 109 0 0 chr5 77681925 77682062 -74855197 + B1_Mus1 SINE Alu 2 138 -10 4 1177 275 26 0 49 chr5 77682062 77682103 -74855156 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1177 238 238 49 7 chr5 77682135 77682279 -74854980 + (TA)n Simple_repeat Simple_repeat 2 151 0 4 1177 730 287 5 34 chr5 77682287 77682496 -74854763 - B3 SINE B2 -12 204 2 4 1177 476 306 18 71 chr5 77682526 77682695 -74854564 - RSINE1 SINE B4 -4 161 2 4 1177 660 226 31 25 chr5 77682710 77682869 -74854390 + ID_B1 SINE B4 61 220 -4 4 1177 480 244 36 44 chr5 77682951 77683088 -74854171 + B1_Mur1 SINE Alu 1 136 -13 4 1177 281 193 140 0 chr5 77683079 77683136 -74854123 + B1_Mur2 SINE Alu 80 144 -5 4 1177 521 207 198 0 chr5 77683163 77683279 -74853980 + B1_Mus2 SINE Alu 1 139 -8 4 1177 455 0 18 0 chr5 77683306 77683361 -74853898 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1177 366 305 8 56 chr5 77683468 77683593 -74853666 - PB1D7 SINE Alu -1 119 1 5 1177 254 250 45 107 chr5 77683628 77683740 -74853519 + L1ME1 LINE L1 5967 6071 -108 5 1177 279 180 0 0 chr5 77683920 77683970 -74853289 + B1F SINE Alu 88 137 -12 5 1177 360 0 0 0 chr5 77683983 77684023 -74853236 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1177 468 0 0 0 chr5 77684023 77684074 -74853185 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1177 476 293 17 0 chr5 77684085 77684201 -74853058 + PB1D7 SINE Alu 1 118 -2 5 1177 324 0 0 0 chr5 77684259 77684295 -74852964 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1177 557 189 317 12 chr5 77684421 77684582 -74852677 - B3 SINE B2 -6 210 1 5 1177 206 189 0 86 chr5 77684649 77684666 -74852593 + T-rich Low_complexity Low_complexity 37 53 0 5 1177 1168 82 0 0 chr5 77684666 77684812 -74852447 - B1_Mm SINE Alu 0 147 2 5 1177 206 189 0 86 chr5 77684812 77684852 -74852407 + T-rich Low_complexity Low_complexity 1 36 0 5 1177 1120 88 0 0 chr5 77684852 77684999 -74852260 - B1_Mus1 SINE Alu 0 148 2 5 1177 668 147 9 9 chr5 77685055 77685165 -74852094 + B1_Mus1 SINE Alu 31 140 -8 5 1177 253 394 77 0 chr5 77685231 77685249 -74852010 - B3 SINE B2 -103 113 2 5 1177 399 349 0 0 chr5 77685249 77685335 -74851924 - RSINE1 SINE B4 -77 88 3 5 1177 604 199 55 86 chr5 77685335 77685492 -74851767 - ID_B1 SINE B4 -62 230 81 5 1177 261 0 0 0 chr5 77685499 77685528 -74851731 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1177 782 236 30 25 chr5 77685554 77685754 -74851505 - B3 SINE B2 -13 203 3 5 1177 330 253 264 6 chr5 77685825 77685992 -74851267 - L1M5 LINE L1 -490 5689 5480 5 1177 252 254 48 0 chr5 77686246 77686309 -74850950 + ID2 SINE ID 4 69 -14 5 1177 733 230 65 20 chr5 77686478 77686678 -74850581 + B3 SINE B2 2 210 -6 5 1177 227 178 0 22 chr5 77686714 77686760 -74850499 + B3A SINE B2 2 46 -152 5 1177 275 263 0 0 chr5 77686815 77686872 -74850387 + ID SINE ID 6 62 -162 5 1177 470 202 138 46 chr5 77687321 77687451 -74849808 - ORR1D1 LTR MaLR 0 374 233 5 1177 612 0 0 0 chr5 77687465 77687533 -74849726 + (GA)n Simple_repeat Simple_repeat 1 68 0 5 1177 925 141 288 0 chr5 77687533 77687614 -74849645 + ORR1C2 LTR MaLR 71 172 -212 5 1177 579 96 0 0 chr5 77687614 77687697 -74849562 + (CCTG)n Simple_repeat Simple_repeat 1 83 0 5 1177 925 145 273 8 chr5 77687697 77687823 -74849436 + ORR1C2 LTR MaLR 173 324 -60 5 1177 207 0 0 0 chr5 77687870 77687893 -74849366 + (TAA)n Simple_repeat Simple_repeat 2 24 0 5 1177 1235 34 7 0 chr5 77687915 77688061 -74849198 + B1_Mus1 SINE Alu 2 148 0 5 1177 474 18 0 0 chr5 77688072 77688127 -74849132 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1177 868 107 0 0 chr5 77688208 77688330 -74848929 - B1_Mus2 SINE Alu 0 147 26 5 1177 191 296 106 44 chr5 77688637 77688750 -74848509 - L2a LINE L2 -38 3388 3269 5 1177 1577 47 0 20 chr5 77688858 77689054 -74848205 + B2_Mm1a SINE B2 2 193 0 5 1177 258 203 108 0 chr5 77689079 77689153 -74848106 + PB1D9 SINE Alu 33 114 -6 5 1177 348 43 0 0 chr5 77689244 77689290 -74847969 + (CAGG)n Simple_repeat Simple_repeat 2 47 0 5 1177 697 117 125 0 chr5 77689647 77689775 -74847484 + B1_Mus1 SINE Alu 5 148 0 5 1177 207 69 0 0 chr5 77689778 77689807 -74847452 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 5 1177 436 253 0 0 chr5 77689813 77689896 -74847363 - B1_Mur1 SINE Alu -35 114 32 5 1177 444 206 92 38 chr5 77689894 77690025 -74847234 - RSINE1 SINE B4 -4 161 24 5 1177 289 241 82 24 chr5 77690025 77690110 -74847149 - ID_B1 SINE B4 0 224 135 5 1177 228 67 0 0 chr5 77690112 77690142 -74847117 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1177 414 289 0 0 chr5 77690150 77690240 -74847019 - B4A SINE B4 -15 277 188 5 1177 355 218 27 90 chr5 77690257 77690307 -74846952 + B1_Mus2 SINE Alu 42 90 -57 5 1177 785 166 201 36 chr5 77690307 77690444 -74846815 + URR1A DNA MER1_type 1 159 -67 5 1177 252 0 0 0 chr5 77690444 77690472 -74846787 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1177 785 166 201 36 chr5 77690472 77690528 -74846731 + URR1A DNA MER1_type 160 225 -1 5 1177 355 218 27 90 chr5 77690528 77690588 -74846671 + B1_Mus2 SINE Alu 91 145 -2 5 1177 297 0 0 0 chr5 77691018 77691051 -74846208 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1177 452 193 121 17 chr5 77691523 77691639 -74845620 - B1F2 SINE Alu 0 149 22 5 1177 657 58 0 0 chr5 77691756 77691842 -74845417 + (CCA)n Simple_repeat Simple_repeat 1 86 0 5 1177 702 148 117 0 chr5 77691890 77692018 -74845241 + B1_Mus2 SINE Alu 4 146 -1 5 1177 734 199 0 8 chr5 77692047 77692174 -74845085 + B3 SINE B2 5 130 -86 5 1177 452 292 100 48 chr5 77692272 77692460 -74844799 + ID_B1 SINE B4 4 191 -33 5 1177 331 224 0 0 chr5 77692516 77692574 -74844685 - MTE2b LTR MaLR -253 126 69 5 1177 1314 97 16 5 chr5 77692574 77692761 -74844498 - B2_Mm2 SINE B2 -6 189 1 5 1177 422 289 25 8 chr5 77692762 77692884 -74844375 - ID_B1 SINE B4 -20 204 81 5 1177 284 310 79 10 chr5 77693019 77693120 -74844139 + PB1D10 SINE Alu 7 114 -3 5 1177 192 40 0 0 chr5 77693207 77693232 -74844027 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1177 470 229 19 89 chr5 77693696 77693854 -74843405 - B1F SINE Alu 0 149 3 5 1177 218 271 129 0 chr5 77693875 77693945 -74843314 - ID_B1 SINE B4 -66 158 80 5 1177 337 228 15 123 chr5 77693961 77694091 -74843168 - PB1D10 SINE Alu 0 117 2 5 1177 312 200 0 54 chr5 77694401 77694512 -74842747 + (CGGG)n Simple_repeat Simple_repeat 3 107 0 5 1177 207 250 29 29 chr5 77694811 77694881 -74842378 + (CGGGG)n Simple_repeat Simple_repeat 4 73 0 5 1177 30 0 0 0 chr5 77694913 77694943 -74842316 + GC_rich Low_complexity Low_complexity 1 30 0 5 1177 232 203 13 51 chr5 77695103 77695181 -74842078 + C-rich Low_complexity Low_complexity 2 76 0 5 1177 31 44 0 0 chr5 77695471 77695516 -74841743 + GC_rich Low_complexity Low_complexity 1 45 0 5 1177 330 26 0 0 chr5 77696450 77696489 -74840770 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1177 245 313 45 0 chr5 77696737 77696804 -74840455 - B1F1 SINE Alu -78 71 2 5 1177 279 0 0 0 chr5 77696903 77696934 -74840325 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1177 495 172 198 0 chr5 77698021 77698137 -74839122 - B1_Mus2 SINE Alu -1 146 8 5 1177 527 262 62 95 chr5 77698159 77698237 -74839022 - ID_B1 SINE B4 -10 214 150 5 1177 1346 60 49 0 chr5 77698237 77698261 -74838998 - B2_Mm1t SINE B2 0 193 162 5 1177 207 0 0 0 chr5 77698261 77698284 -74838975 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5 1177 1346 60 49 0 chr5 77698284 77698442 -74838817 - B2_Mm1t SINE B2 -32 161 3 5 1177 527 262 62 95 chr5 77698442 77698574 -74838685 - ID_B1 SINE B4 -75 149 11 5 1177 621 261 37 16 chr5 77698582 77698773 -74838486 - B3 SINE B2 -19 197 3 5 1177 261 83 0 0 chr5 77698801 77698837 -74838422 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 5 1177 969 68 98 0 chr5 77698837 77698970 -74838289 - B1_Mus1 SINE Alu -1 147 2 5 1177 443 85 0 0 chr5 77699150 77699209 -74838050 + B2_Mm2 SINE B2 1 59 -136 5 1177 290 232 24 142 chr5 77699205 77699348 -74837911 - B1F2 SINE Alu -11 138 6 5 1177 215 286 107 74 chr5 77699242 77699363 -74837896 - ID_B1 SINE B4 -23 201 77 5 1177 881 224 53 83 chr5 77699509 77699811 -74837448 - RCHARR1 DNA MER1_type -177 797 505 5 1177 246 136 0 22 chr5 77699847 77699892 -74837367 + B1_Mm SINE Alu 91 134 -13 5 1177 400 273 39 8 chr5 77699995 77700124 -74837135 - RCHARR1 DNA MER1_type -561 413 281 5 1177 495 180 34 0 chr5 77700226 77700315 -74836944 - B1_Mur2 SINE Alu -57 92 1 5 1177 375 289 19 28 chr5 77700229 77700336 -74836923 - B4 SINE B4 -119 173 68 5 1177 1114 75 7 14 chr5 77700455 77700603 -74836656 + B1_Mus1 SINE Alu 1 147 -1 5 1177 279 174 39 0 chr5 77700663 77700721 -74836538 + B3A SINE B2 18 77 -139 5 1177 23 0 0 0 chr5 77700866 77700889 -74836370 + AT_rich Low_complexity Low_complexity 1 23 0 5 1177 836 97 17 1 chr5 77700891 77701029 -74836230 - B1_Mus1 SINE Alu -6 144 5 5 1177 249 172 82 123 chr5 77701040 77701113 -74836146 + B1F1 SINE Alu 73 142 -7 5 1177 361 213 57 73 chr5 77701525 77701627 -74835632 + PB1D10 SINE Alu 32 131 -17 5 1177 22 56 0 0 chr5 77701682 77701718 -74835541 + AT_rich Low_complexity Low_complexity 1 36 0 5 1177 180 0 0 0 chr5 77701809 77701829 -74835430 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1177 931 48 89 0 chr5 77701830 77701954 -74835305 - B1_Mus1 SINE Alu -12 136 2 5 1177 636 159 18 0 chr5 77702085 77702198 -74835061 - B1_Mur3 SINE Alu 0 149 35 5 1177 333 227 45 35 chr5 77702339 77702453 -74834806 - B3A SINE B2 -81 117 1 5 1177 457 247 158 40 chr5 77702475 77702652 -74834607 - B3A SINE B2 0 198 1 5 1177 289 333 29 0 chr5 77702653 77702755 -74834504 - PB1D10 SINE Alu -8 109 5 5 1177 313 244 91 23 chr5 77702847 77702935 -74834324 - B1_Mur3 SINE Alu -55 94 1 5 1177 364 299 34 68 chr5 77702935 77703020 -74834239 - ID SINE ID -144 80 1 5 1177 380 238 222 0 chr5 77703509 77703635 -74833624 - B3 SINE B2 -53 163 10 5 1177 244 183 0 104 chr5 77703836 77703903 -74833356 + B1F SINE Alu 1 60 -89 5 1177 249 233 26 52 chr5 77704043 77704120 -74833139 + PB1D10 SINE Alu 43 117 0 5 1177 307 233 41 0 chr5 77704487 77704560 -74832699 - PB1D9 SINE Alu -43 77 2 6 1177 605 218 147 0 chr5 77704715 77704885 -74832374 - B3 SINE B2 -18 198 4 6 1177 183 42 0 0 chr5 77704950 77704974 -74832285 + (C)n Simple_repeat Simple_repeat 1 24 0 6 1177 714 246 31 46 chr5 77705050 77705246 -74832013 + B3 SINE B2 24 216 0 6 1177 243 324 82 139 chr5 77705346 77705504 -74831755 - B1F SINE Alu 0 149 1 6 1177 227 182 0 22 chr5 77705679 77705724 -74831535 + B3 SINE B2 1 44 -172 6 1177 1174 68 0 7 chr5 77705743 77705890 -74831369 - B1_Mm SINE Alu -1 146 1 6 1177 1491 32 32 26 chr5 77705898 77706088 -74831171 - B2_Mm1a SINE B2 -2 191 1 6 1177 451 287 30 0 chr5 77706092 77706193 -74831066 + B3A SINE B2 38 141 -57 6 1177 1467 170 55 36 chr5 77706206 77706650 -74830609 + RMER19A LTR ERVK 187 737 0 6 1177 227 198 143 36 chr5 77706650 77706732 -74830527 + B2_Mm2 SINE B2 96 186 -9 6 1177 260 281 26 88 chr5 77706787 77706900 -74830359 + RSINE1 SINE B4 60 165 0 6 1177 1282 87 40 0 chr5 77707071 77707244 -74830015 - B2_Mm2 SINE B2 -1 194 15 6 1177 682 249 180 35 chr5 77707407 77707690 -74829569 - Lx8 LINE L1 -463 7010 6687 6 1177 1039 63 0 83 chr5 77707694 77707850 -74829409 - B1_Mus1 SINE Alu -4 144 2 6 1177 277 290 0 0 chr5 77708044 77708113 -74829146 - ID_B1 SINE B4 -105 119 51 6 1177 198 128 0 0 chr5 77711967 77712006 -74825253 + (GGA)n Simple_repeat Simple_repeat 2 40 0 6 1177 222 62 0 0 chr5 77712695 77712727 -74824532 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 6 1177 23 0 0 0 chr5 77712878 77712901 -74824358 + AT_rich Low_complexity Low_complexity 1 23 0 6 1177 180 333 16 0 chr5 77713330 77713393 -74823866 + L3 LINE CR1 3980 4043 -446 6 1177 23 33 0 0 chr5 77713904 77713934 -74823325 + AT_rich Low_complexity Low_complexity 1 30 0 6 1177 21 0 0 0 chr5 77715310 77715331 -74821928 + AT_rich Low_complexity Low_complexity 1 21 0 6 1177 312 237 40 0 chr5 77715548 77715624 -74821635 - ID4 SINE ID -1 82 4 6 1177 348 286 188 0 chr5 77717318 77717430 -74819829 + RSINE1 SINE B4 27 159 -6 6 1177 338 235 118 0 chr5 77717537 77717622 -74819637 + B3 SINE B2 1 95 -121 6 1177 421 179 131 0 chr5 77717675 77717759 -74819500 - PB1D9 SINE Alu -21 99 5 6 1177 694 212 129 0 chr5 77718140 77718310 -74818949 + B3 SINE B2 1 192 -24 6 1177 247 139 0 0 chr5 77718601 77718637 -74818622 - B1_Mur4 SINE Alu -112 38 3 6 1177 1077 230 108 35 chr5 77718984 77719299 -74817960 - ORR1D2 LTR MaLR -32 338 1 6 1177 1185 62 7 0 chr5 77719394 77719540 -74817719 - B1_Mm SINE Alu 0 147 1 6 1177 812 208 65 92 chr5 77719543 77719717 -74817542 - B3 SINE B2 -2 214 40 6 1177 942 170 36 31 chr5 77719717 77719911 -74817348 - B2_Mm2 SINE B2 0 195 1 6 1177 812 208 65 92 chr5 77719911 77719953 -74817306 - B3 SINE B2 -177 39 4 6 1177 268 255 138 0 chr5 77720194 77720288 -74816971 + PB1D10 SINE Alu 10 116 -1 6 1177 1012 46 31 0 chr5 77720338 77720468 -74816791 + B1_Mm SINE Alu 14 147 0 6 1177 216 0 0 0 chr5 77720468 77720492 -74816767 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1177 823 171 7 7 chr5 77720538 77720679 -74816580 + B1_Mus2 SINE Alu 2 142 -5 6 1177 335 253 24 60 chr5 77720868 77720952 -74816307 + PB1D10 SINE Alu 1 81 -36 6 1177 22 0 0 0 chr5 77720977 77720999 -74816260 + GC_rich Low_complexity Low_complexity 1 22 0 6 1177 353 217 28 0 chr5 77721000 77721072 -74816187 - PB1D10 SINE Alu -229 85 6 6 1177 1427 69 16 5 chr5 77721312 77721502 -74815757 + B2_Mm2 SINE B2 2 193 -2 6 1177 180 0 0 0 chr5 77721504 77721524 -74815735 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1177 729 240 58 19 chr5 77721594 77721802 -74815457 - ID_B1 SINE B4 -6 218 3 6 1177 278 257 100 0 chr5 77722174 77722244 -74815015 - B3 SINE B2 -6 210 134 6 1177 554 240 0 15 chr5 77722619 77722750 -74814509 - B3 SINE B2 -85 131 3 6 1177 343 299 39 59 chr5 77722759 77722912 -74814347 + ORR1E LTR MaLR 50 199 -160 6 1177 29 0 0 0 chr5 77723216 77723245 -74814014 + AT_rich Low_complexity Low_complexity 1 29 0 6 1177 338 264 52 168 chr5 77723654 77723746 -74813513 + B4A SINE B4 3 94 -198 6 1177 395 272 157 6 chr5 77723746 77723905 -74813354 + B3A SINE B2 2 184 -14 6 1177 338 264 52 168 chr5 77723905 77723985 -74813274 + B4A SINE B4 95 155 -137 6 1177 415 213 122 69 chr5 77723927 77724058 -74813201 + B1_Mur2 SINE Alu 6 143 -6 6 1177 1040 110 6 0 chr5 77724226 77724389 -74812870 + B2_Mm2 SINE B2 2 165 -30 6 1177 195 129 0 0 chr5 77724416 77724447 -74812812 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 6 1177 1377 96 16 0 chr5 77724454 77724642 -74812617 - B2_Mm2 SINE B2 -3 192 2 6 1177 835 89 86 36 chr5 77724648 77724787 -74812472 - B1_Mus1 SINE Alu -1 147 2 6 1177 407 181 11 46 chr5 77725042 77725129 -74812130 - B3A SINE B2 -88 110 27 6 1177 603 177 88 8 chr5 77725138 77725263 -74811996 - B1_Mur4 SINE Alu -6 144 10 6 1177 377 273 45 0 chr5 77725271 77725359 -74811900 - PB1D7 SINE Alu -28 92 1 6 1177 218 186 47 0 chr5 77725379 77725422 -74811837 - PB1D7 SINE Alu -75 45 1 6 1177 1246 81 11 17 chr5 77725426 77725446 -74811813 - B2_Mm1a SINE B2 -18 175 157 6 1177 369 0 0 0 chr5 77725446 77725487 -74811772 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 6 1177 1246 81 11 17 chr5 77725487 77725642 -74811617 - B2_Mm1a SINE B2 -37 156 1 6 147 219 308 167 0 chr5 77725671 77725749 -74811510 - B1F2 SINE Alu -57 92 2 6 1178 986 176 0 0 chr5 77725782 77725930 -74811329 + B1_Mur4 SINE Alu 2 149 -1 6 1178 562 135 115 0 chr5 77725935 77726039 -74811220 + B1_Mur4 SINE Alu 1 116 -34 6 1178 252 0 0 0 chr5 77726054 77726082 -74811177 + (CAA)n Simple_repeat Simple_repeat 2 29 0 6 1178 703 201 7 34 chr5 77726290 77726439 -74810820 + B1_Mur1 SINE Alu 5 149 0 6 1178 690 125 50 22 chr5 77726470 77726609 -74810650 + B1_Mus1 SINE Alu 6 148 0 6 1178 291 265 25 155 chr5 77726654 77726815 -74810444 + RSINE1 SINE B4 4 143 -22 6 1178 486 0 0 0 chr5 77726844 77726898 -74810361 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1178 236 100 25 0 chr5 77726939 77726979 -74810280 + (CAGG)n Simple_repeat Simple_repeat 2 42 0 6 1178 353 220 150 0 chr5 77726993 77727093 -74810166 + B1_Mur2 SINE Alu 35 149 0 6 1178 401 299 30 38 chr5 77727227 77727359 -74809900 + ID_B1 SINE B4 94 224 0 6 1178 665 217 89 0 chr5 77727363 77727520 -74809739 - B3 SINE B2 -44 172 2 6 1178 410 245 29 0 chr5 77727989 77728091 -74809168 - B1_Mus1 SINE Alu -41 107 3 6 1178 305 258 9 82 chr5 77728091 77728122 -74809137 - MT2B LTR ERVL -440 161 139 6 1178 210 128 0 0 chr5 77728184 77728223 -74809036 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1178 1144 62 7 0 chr5 77728223 77728368 -74808891 - B1_Mm SINE Alu 0 147 2 6 1178 231 282 141 0 chr5 77728370 77728448 -74808811 + MER3 DNA MER1_type 120 208 -1 6 1178 361 250 20 129 chr5 77728900 77728960 -74808299 + ID_B1 SINE B4 94 154 -70 6 1178 1272 34 0 0 chr5 77728960 77729107 -74808152 + B1_Mus2 SINE Alu 1 147 0 6 1178 361 250 20 129 chr5 77729107 77729193 -74808066 + ID_B1 SINE B4 155 224 0 6 1178 1658 42 0 0 chr5 77729270 77729462 -74807797 + B2_Mm1a SINE B2 2 193 0 6 1178 21 0 0 0 chr5 77729496 77729517 -74807742 + AT_rich Low_complexity Low_complexity 1 21 0 6 1178 231 172 154 15 chr5 77729609 77729674 -74807585 + MT2B2 LTR ERVL 168 241 -343 6 1178 341 200 0 0 chr5 77729631 77729701 -74807558 + PB1D10 SINE Alu 41 110 -7 6 1178 979 170 16 26 chr5 77729715 77729908 -74807351 + B2_Mm2 SINE B2 5 195 0 6 1178 582 15 0 0 chr5 77730350 77730417 -74806842 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1178 190 125 54 0 chr5 77731021 77731077 -74806182 + (CAAAC)n Simple_repeat Simple_repeat 2 60 0 6 1178 248 238 143 0 chr5 77731190 77731253 -74806006 + B3A SINE B2 93 164 -34 6 1178 1655 11 0 0 chr5 77731292 77731523 -74805736 + L1Md_A LINE L1 6393 6582 0 6 1178 187 93 23 23 chr5 77731567 77731611 -74805648 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1178 1118 65 0 0 chr5 77732031 77732184 -74805075 - B2_Mm2 SINE B2 -41 154 2 6 1178 545 165 148 0 chr5 77732186 77732301 -74804958 + B1_Mm SINE Alu 16 147 0 6 1178 1595 26 21 0 chr5 77732388 77732577 -74804682 - B2_Mm1a SINE B2 0 193 1 6 1178 1058 57 57 0 chr5 77732607 77732747 -74804512 - B1_Mus1 SINE Alu 0 148 1 6 1178 404 172 53 21 chr5 77732749 77732844 -74804415 - PB1D9 SINE Alu 0 120 23 6 1178 23 68 0 0 chr5 77732851 77732895 -74804364 + AT_rich Low_complexity Low_complexity 1 44 0 6 1178 239 236 51 92 chr5 77732905 77733003 -74804256 - B3A SINE B2 -16 182 89 6 1178 407 236 15 66 chr5 77733724 77733867 -74803392 + PB1D7 SINE Alu 13 149 0 6 1178 1046 88 0 0 chr5 77734000 77734147 -74803112 - B1_Mus1 SINE Alu 0 148 2 6 1178 382 214 0 120 chr5 77734045 77734162 -74803097 - MT2B LTR ERVL -344 257 155 6 1178 1307 81 6 0 chr5 77734256 77734415 -74802844 + B2_Mm1a SINE B2 1 160 -33 6 1178 252 0 0 0 chr5 77734415 77734443 -74802816 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 6 1178 1307 81 6 0 chr5 77734443 77734457 -74802802 + B2_Mm1a SINE B2 161 174 -19 6 1178 336 282 133 7 chr5 77734461 77734611 -74802648 + L1MA4 LINE L1 5714 5882 -418 6 1178 716 155 262 18 chr5 77735572 77735736 -74801523 - B3 SINE B2 -12 204 1 7 1178 266 331 55 55 chr5 77735885 77736013 -74801246 - ID_B1 SINE B4 -2 222 95 7 1178 757 204 0 0 chr5 77736040 77736177 -74801082 - B1_Mur2 SINE Alu -12 137 1 7 1178 221 147 129 29 chr5 77736807 77736877 -74800382 - MIRb SINE MIR -68 200 124 7 1178 1052 163 45 25 chr5 77736961 77737162 -74800097 - URR1B DNA MER1_type 0 225 21 7 1178 585 201 106 12 chr5 77737572 77737733 -74799526 - ID_B1 SINE B4 -23 201 26 7 1178 229 320 0 0 chr5 77738724 77738824 -74798435 + (CTG)n Simple_repeat Simple_repeat 3 102 0 7 1178 24 0 0 0 chr5 77739016 77739040 -74798219 + GC_rich Low_complexity Low_complexity 1 24 0 7 1178 315 0 0 0 chr5 77739992 77740027 -74797232 + (TTA)n Simple_repeat Simple_repeat 1 35 0 7 1178 226 254 119 0 chr5 77740029 77740096 -74797163 - ID4_ SINE ID -8 75 1 7 1178 435 135 0 51 chr5 77740947 77741025 -74796234 + B3A SINE B2 1 74 -124 7 1178 234 317 76 115 chr5 77741239 77741371 -74795888 - MLT1G LTR MaLR -401 190 55 7 1178 469 244 0 25 chr5 77741371 77741493 -74795766 - PB1D7 SINE Alu -1 119 1 7 1178 234 317 76 115 chr5 77741493 77741517 -74795742 - MLT1G LTR MaLR -537 54 40 7 1178 597 170 17 67 chr5 77741556 77741676 -74795583 + PB1D9 SINE Alu 2 115 -5 7 1178 370 190 8 32 chr5 77741689 77741814 -74795445 + (TA)n Simple_repeat Simple_repeat 2 123 0 7 1178 344 256 145 15 chr5 77742385 77742516 -74794743 - B1F1 SINE Alu -1 148 1 7 1178 731 151 36 7 chr5 77742624 77742764 -74794495 - B1_Mur4 SINE Alu -6 144 1 7 1178 1103 68 0 7 chr5 77743045 77743193 -74794066 - B1_Mm SINE Alu 0 147 1 7 1178 761 223 32 11 chr5 77743332 77743522 -74793737 - B3 SINE B2 0 216 23 7 1178 243 286 143 0 chr5 77743625 77743730 -74793529 - L1MC4a LINE L1 -282 7600 7481 7 1178 677 173 164 77 chr5 77744219 77744267 -74792992 - URR1B DNA MER1_type 0 225 191 7 1178 941 148 36 62 chr5 77744267 77744306 -74792953 + B2_Mm2 SINE B2 2 40 -155 7 1178 1197 104 49 0 chr5 77744306 77744489 -74792770 + B2_Mm1a SINE B2 2 193 0 7 1178 941 148 36 62 chr5 77744489 77744644 -74792615 + B2_Mm2 SINE B2 41 191 -4 7 1178 677 173 164 77 chr5 77744644 77744802 -74792457 - URR1B DNA MER1_type -35 190 1 7 1178 402 215 130 9 chr5 77745284 77745392 -74791867 - PB1 SINE Alu -2 125 5 7 1178 620 59 0 12 chr5 77745524 77745610 -74791649 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 7 1178 210 250 50 0 chr5 77745617 77745677 -74791582 - PB1D10 SINE Alu -14 103 41 7 1178 273 269 38 25 chr5 77746881 77746961 -74790298 - ID4 SINE ID -1 82 2 7 1178 1118 88 0 13 chr5 77747040 77747189 -74790070 + B1_Mus1 SINE Alu 1 147 -1 7 1178 314 98 20 0 chr5 77747447 77747498 -74789761 + (TCCCC)n Simple_repeat Simple_repeat 4 55 0 7 1178 372 43 0 0 chr5 77747498 77747544 -74789715 + (TTTTC)n Simple_repeat Simple_repeat 2 47 0 7 1178 899 135 0 0 chr5 77747545 77747678 -74789581 - B1_Mus1 SINE Alu -14 134 2 7 1178 761 221 14 0 chr5 77748434 77748574 -74788685 - B1_Mur3 SINE Alu -7 142 1 7 1178 235 190 48 40 chr5 77748574 77748700 -74788559 + (TATAA)n Simple_repeat Simple_repeat 3 129 0 7 1178 477 258 0 0 chr5 77748847 77748940 -74788319 - PB1D10 SINE Alu -8 109 17 7 1178 234 0 0 0 chr5 77749150 77749176 -74788083 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1178 561 299 27 23 chr5 77749541 77749722 -74787537 + B3A SINE B2 10 187 -8 7 1178 221 242 212 0 chr5 77750204 77750270 -74786989 - ID2 SINE ID -2 81 2 7 1178 243 125 0 0 chr5 77750308 77750348 -74786911 + (TCTTG)n Simple_repeat Simple_repeat 2 41 0 7 1178 854 151 22 0 chr5 77750360 77750499 -74786760 - B1_Mus1 SINE Alu -5 143 2 7 1178 841 150 35 7 chr5 77750532 77750673 -74786586 - B1_Mur2 SINE Alu 0 149 5 7 1178 209 255 0 0 chr5 77750692 77750739 -74786520 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1178 776 187 7 14 chr5 77750897 77751038 -74786221 - B1_Mus1 SINE Alu -7 141 2 7 1178 291 309 68 75 chr5 77751041 77751100 -74786159 - B4 SINE B4 -158 134 3 7 1178 406 149 40 0 chr5 77751100 77751174 -74786085 - B3 SINE B2 -137 79 3 7 1178 274 317 16 40 chr5 77751242 77751367 -74785892 - RSINE1 SINE B4 -25 140 19 7 1178 442 250 28 0 chr5 77751472 77751580 -74785679 - PB1D9 SINE Alu -8 112 2 7 1178 946 223 34 14 chr5 77751606 77751815 -74785444 - B3 SINE B2 0 216 4 7 1178 274 176 14 14 chr5 77751832 77751901 -74785358 - Lx4B LINE L1 -6 7052 6984 7 1178 346 264 38 0 chr5 77752091 77752197 -74785062 + PB1D9 SINE Alu 2 111 -9 7 1178 1430 74 5 10 chr5 77752234 77752426 -74784833 - B2_Mm1a SINE B2 -2 191 1 7 1178 1153 82 0 0 chr5 77753144 77753290 -74783969 + B1_Mus2 SINE Alu 2 147 0 7 1178 225 0 0 0 chr5 77753290 77753315 -74783944 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1178 329 277 68 18 chr5 77753318 77753536 -74783723 - L1MC4 LINE L1 -7 8035 7766 7 1178 216 232 54 0 chr5 77753545 77753601 -74783658 + RSINE1 SINE B4 4 62 -103 7 1178 541 195 141 0 chr5 77754019 77754147 -74783112 - B1F2 SINE Alu -2 147 2 7 1178 210 182 136 0 chr5 77754384 77754450 -74782809 - ID4_ SINE ID -5 78 4 7 1178 291 157 0 0 chr5 77755974 77756025 -74781234 + (CTA)n Simple_repeat Simple_repeat 1 51 0 7 1178 383 250 11 0 chr5 77756077 77756165 -74781094 - PB1D10 SINE Alu -15 102 14 7 1178 423 316 0 9 chr5 77756261 77756376 -74780883 + PB1D7 SINE Alu 6 119 -1 7 1178 949 149 0 7 chr5 77756423 77756572 -74780687 - B1_Mus1 SINE Alu 0 148 1 7 1178 432 0 0 0 chr5 77756587 77756635 -74780624 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1178 403 238 188 7 chr5 77756639 77756783 -74780476 - B3 SINE B2 -46 170 1 7 1178 341 254 15 0 chr5 77756807 77756874 -74780385 - tRNA-Ala-GCY_ tRNA tRNA -3 72 5 7 1178 839 263 28 19 chr5 77756977 77757190 -74780069 - ID_B1 SINE B4 -1 223 9 7 1178 27 23 0 22 chr5 77757202 77757227 -74780032 + AT_rich Low_complexity Low_complexity 1 25 0 7 1178 1134 85 98 0 chr5 77757227 77757391 -74779868 - B2_Mm2 SINE B2 -14 181 2 7 1178 27 23 0 22 chr5 77757391 77757410 -74779849 + AT_rich Low_complexity Low_complexity 1 19 0 7 1178 262 279 59 0 chr5 77757422 77757490 -74779769 - RSINE1 SINE B4 -18 147 76 7 1178 435 234 18 27 chr5 77757571 77757681 -74779578 - PB1D10 SINE Alu -3 114 6 7 1178 226 248 77 29 chr5 77757827 77757931 -74779328 - L2c LINE L2 -5 3382 3274 7 1178 259 211 22 0 chr5 77758657 77758747 -74778512 + (TG)n Simple_repeat Simple_repeat 1 92 0 7 1178 484 292 0 20 chr5 77758749 77758908 -74778351 - B3A SINE B2 -15 201 58 7 1178 1356 88 0 22 chr5 77758944 77759129 -74778130 - B2_Mm2 SINE B2 -14 181 1 7 1178 488 260 16 31 chr5 77759815 77759942 -74777317 + RSINE1 SINE B4 13 137 -28 7 1178 372 208 219 7 chr5 77760525 77760669 -74776590 + B3A SINE B2 16 194 -4 7 1178 311 256 0 12 chr5 77761330 77761413 -74775846 - BC1_Mm scRNA scRNA -57 95 14 7 1178 595 259 7 53 chr5 77761476 77761627 -74775632 - RSINE1 SINE B4 0 165 22 7 1178 576 256 40 94 chr5 77761902 77761949 -74775310 - MER33 DNA MER1_type -35 289 253 7 1178 1352 79 11 0 chr5 77761949 77762126 -74775133 + B2_Mm1t SINE B2 1 179 -14 7 1178 576 256 40 94 chr5 77762126 77762376 -74774883 - MER33 DNA MER1_type -72 252 8 7 1178 408 235 71 57 chr5 77762451 77762591 -74774668 + B1_Mur2 SINE Alu 3 144 -5 7 1178 331 222 0 24 chr5 77762654 77762737 -74774522 + ID4 SINE ID 1 81 -2 7 1178 251 281 0 92 chr5 77762947 77763045 -74774214 - BC1_Mm scRNA scRNA -49 103 15 7 1178 861 222 82 0 chr5 77763055 77763249 -74774010 - B3 SINE B2 -5 211 2 7 1178 267 304 43 17 chr5 77763253 77763370 -74773889 - PB1 SINE Alu -7 120 1 7 1178 509 258 24 16 chr5 77763922 77764048 -74773211 - B1F1 SINE Alu -21 128 2 7 1178 1131 92 68 17 chr5 77764293 77764470 -74772789 - B2_Mm2 SINE B2 -8 187 2 7 1178 1067 205 120 18 chr5 77764974 77765307 -74771952 - ORR1D2 LTR MaLR -2 368 2 7 1178 520 254 29 7 chr5 77766047 77766186 -74771073 + Lx8 LINE L1 7195 7336 -137 7 1178 776 239 89 21 chr5 77766144 77766455 -74770804 - L1_Mm LINE L1 -260 5617 5298 7 1178 189 0 0 0 chr5 77766458 77766479 -74770780 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1178 344 268 219 55 chr5 77766484 77766719 -74770540 - L1_Mm LINE L1 -883 5263 4955 7 1178 574 211 45 30 chr5 77766724 77766856 -74770403 - B3 SINE B2 0 216 83 7 1178 422 259 18 9 chr5 77766869 77766978 -74770281 + B1_Mur1 SINE Alu 39 148 -1 7 1178 607 235 209 14 chr5 77766978 77767319 -74769940 - L1M2 LINE L1 -1328 4815 4455 7 1178 208 162 0 26 chr5 77767339 77767377 -74769882 + CT-rich Low_complexity Low_complexity 2 38 0 7 1178 220 257 0 67 chr5 77767631 77767706 -74769553 + C-rich Low_complexity Low_complexity 5 74 0 7 1178 321 287 50 34 chr5 77767716 77767835 -74769424 - PB1 SINE Alu -5 122 2 7 1178 242 185 56 0 chr5 77768744 77768798 -74768461 - PB1D9 SINE Alu -1 119 63 7 1178 534 260 32 8 chr5 77768791 77768915 -74768344 - B1F SINE Alu -22 127 1 7 1178 2123 98 54 11 chr5 77769524 77769873 -74767386 - RLTR19B LTR ERVK -351 364 1 7 1178 324 120 0 0 chr5 77769957 77770007 -74767252 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1178 711 135 14 100 chr5 77770434 77770574 -74766685 + B1_Mus1 SINE Alu 2 129 -19 8 1178 934 177 156 0 chr5 77770768 77770954 -74766305 - B3 SINE B2 -1 215 1 8 1178 567 229 0 9 chr5 77770956 77771066 -74766193 - PB1D9 SINE Alu -9 111 3 8 1178 1020 140 0 0 chr5 77771084 77771351 -74765908 + (CA)n Simple_repeat Simple_repeat 1 267 0 8 1178 343 244 166 0 chr5 77772819 77772937 -74764322 - MTD LTR MaLR -17 402 240 8 1178 231 214 130 89 chr5 77774018 77774141 -74763118 - L1ME3A LINE L1 -53 6120 5993 8 1178 513 261 154 44 chr5 77774722 77774953 -74762306 - Charlie1 DNA MER1_type -57 2724 2460 8 1178 1397 89 11 0 chr5 77774953 77775144 -74762115 - B2_Mm1t SINE B2 0 193 1 8 1178 513 261 154 44 chr5 77775144 77775185 -74762074 - Charlie1 DNA MER1_type -322 2459 2422 8 1178 202 321 0 0 chr5 77775185 77775241 -74762018 + CT-rich Low_complexity Low_complexity 1 56 0 8 1178 237 232 18 18 chr5 77775284 77775341 -74761918 - ID_B1 SINE B4 -80 144 88 8 1178 530 291 35 0 chr5 77775391 77775532 -74761727 - RSINE1 SINE B4 -4 161 16 8 1178 335 237 26 0 chr5 77775706 77775782 -74761477 - B1F1 SINE Alu -31 118 41 8 1178 419 90 70 0 chr5 77775909 77776009 -74761250 + GA-rich Low_complexity Low_complexity 2 108 0 8 1178 212 200 0 22 chr5 77776147 77776193 -74761066 + (TATG)n Simple_repeat Simple_repeat 2 46 0 8 1178 333 211 42 53 chr5 77776226 77776321 -74760938 + B3A SINE B2 9 102 -96 8 1178 573 243 119 21 chr5 77777064 77777207 -74760052 + RSINE1 SINE B4 3 159 -6 8 1178 979 216 15 5 chr5 77777670 77777870 -74759389 - B3 SINE B2 -13 203 2 8 1178 271 299 115 0 chr5 77778631 77778718 -74758541 + PB1 SINE Alu 5 101 -26 8 1178 1101 99 0 0 chr5 77778721 77778882 -74758377 + (TCTCCC)n Simple_repeat Simple_repeat 2 162 0 8 1178 487 165 38 0 chr5 77778894 77778973 -74758286 - B1F1 SINE Alu -54 95 14 8 1178 1008 186 64 0 chr5 77779004 77779192 -74758067 + B3 SINE B2 5 204 -12 8 1178 443 74 0 14 chr5 77779728 77779797 -74757462 + (TG)n Simple_repeat Simple_repeat 1 68 0 8 1178 569 227 0 56 chr5 77779799 77779925 -74757334 - B3A SINE B2 -48 150 32 8 1178 186 43 0 0 chr5 77780752 77780775 -74756484 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1178 668 167 126 22 chr5 77781263 77781398 -74755861 - B1_Mur1 SINE Alu 0 149 1 8 1178 243 0 0 0 chr5 77781419 77781446 -74755813 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1178 431 228 244 0 chr5 77782325 77782448 -74754811 + B4A SINE B4 105 257 -35 8 1178 1043 46 39 0 chr5 77782482 77782612 -74754647 - B1_Mus1 SINE Alu -9 139 5 8 1178 245 267 79 13 chr5 77782749 77782825 -74754434 - PB1D10 SINE Alu 0 117 37 8 1178 345 214 0 67 chr5 77783001 77783091 -74754168 - B3A SINE B2 -28 170 87 8 1178 386 229 82 114 chr5 77784076 77784328 -74752931 + MTEa LTR MaLR 106 379 0 8 1178 210 71 0 0 chr5 77785037 77785065 -74752194 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 8 1178 515 322 98 0 chr5 77785629 77785834 -74751425 + MER58B DNA MER1_type 3 227 -114 8 1178 1415 107 142 0 chr5 77786229 77786454 -74750805 - Lx LINE L1 0 6654 6398 8 1178 366 261 11 0 chr5 77786474 77786562 -74750697 - B4A SINE B4 -28 264 176 8 1178 438 283 9 26 chr5 77787969 77788085 -74749174 - PB1D7 SINE Alu -3 117 4 8 1178 222 308 15 15 chr5 77788028 77788094 -74749165 - B4A SINE B4 -146 146 81 8 1178 23 0 0 0 chr5 77788130 77788153 -74749106 + GC_rich Low_complexity Low_complexity 1 23 0 8 1178 790 143 8 0 chr5 77788155 77788274 -74748985 - B1_Mur2 SINE Alu -17 132 13 8 1178 313 315 101 41 chr5 77788331 77788599 -74748660 - L1M5 LINE L1 -1096 5050 4767 8 1178 222 171 0 41 chr5 77788764 77788837 -74748422 + G-rich Low_complexity Low_complexity 2 71 0 8 1178 305 274 0 16 chr5 77789474 77789537 -74747722 - ID4_ SINE ID -14 69 8 8 1178 498 222 46 31 chr5 77789558 77789688 -74747571 - B1F1 SINE Alu -8 141 10 8 1178 432 97 0 0 chr5 77790070 77790132 -74747127 + (GGAA)n Simple_repeat Simple_repeat 2 63 0 8 1178 396 0 0 0 chr5 77791226 77791270 -74745989 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1178 3056 46 10 13 chr5 77794408 77794801 -74742458 - L1Md_F2 LINE L1 -1 6581 6190 8 1178 397 322 0 25 chr5 77797260 77797378 -74739881 - ID_B1 SINE B4 -40 184 70 8 1178 388 212 38 0 chr5 77797819 77797899 -74739360 + B1_Mur1 SINE Alu 51 133 -16 8 1178 249 237 10 30 chr5 77797899 77797923 -74739336 + polypurine Low_complexity Low_complexity 1 23 0 8 1178 756 32 0 0 chr5 77797923 77798018 -74739241 + (CA)n Simple_repeat Simple_repeat 2 96 0 8 1178 249 237 10 30 chr5 77798018 77798093 -74739166 + GA-rich Low_complexity Low_complexity 24 97 0 8 1178 250 258 45 0 chr5 77798448 77798514 -74738745 + MTEb LTR MaLR 301 369 -10 8 1178 350 276 83 28 chr5 77798761 77798869 -74738390 + PB1D10 SINE Alu 3 116 -1 8 1178 302 350 66 15 chr5 77798993 77799190 -74738069 + L2c LINE L2 2916 3122 -265 8 1178 288 77 0 0 chr5 77799836 77799875 -74737384 + (A)n Simple_repeat Simple_repeat 1 39 0 8 1178 853 120 0 0 chr5 77800133 77800250 -74737009 - B1_Mus1 SINE Alu -4 144 28 8 1178 800 145 50 7 chr5 77800438 77800577 -74736682 - B1_Mus2 SINE Alu -2 145 1 8 1178 289 304 0 0 chr5 77800586 77800665 -74736594 - ID4_ SINE ID -1 82 4 8 1178 574 257 59 0 chr5 77800881 77801017 -74736242 + B3 SINE B2 73 216 0 8 1178 296 174 42 42 chr5 77801826 77801898 -74735361 - MTEa LTR MaLR -6 373 302 8 1178 705 114 0 0 chr5 77802208 77802322 -74734937 + (TTTC)n Simple_repeat Simple_repeat 1 114 0 8 1178 1305 14 0 0 chr5 77802322 77802469 -74734790 - B1_Mus2 SINE Alu 0 147 1 8 1178 1280 296 36 63 chr5 77802908 77803021 -74734238 - L1MA7 LINE L1 -12 6279 6163 8 1178 681 56 28 0 chr5 77803021 77803128 -74734131 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 8 1178 1280 296 36 63 chr5 77803128 77803142 -74734117 - L1MA7 LINE L1 -129 6162 6157 8 1178 1289 28 5 32 chr5 77803142 77803327 -74733932 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 8 1178 468 0 0 0 chr5 77803327 77803379 -74733880 + (CCTA)n Simple_repeat Simple_repeat 1 52 0 8 1178 1280 296 36 63 chr5 77803379 77803886 -74733373 - L1MA7 LINE L1 -135 6156 5661 8 1178 216 0 0 0 chr5 77803886 77803910 -74733349 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1178 1104 292 54 59 chr5 77804127 77804490 -74732769 + MLT1F1 LTR MaLR 41 373 -196 8 1178 476 45 30 0 chr5 77804490 77804556 -74732703 + (TATG)n Simple_repeat Simple_repeat 1 68 0 8 1178 1104 325 46 79 chr5 77804556 77804606 -74732653 + MLT1F1 LTR MaLR 374 399 -170 8 1178 415 318 123 24 chr5 77804606 77804857 -74732402 - B4A SINE B4 -16 276 1 8 1178 1104 325 46 79 chr5 77804857 77805030 -74732229 + MLT1F1 LTR MaLR 400 569 0 8 1178 1423 68 16 10 chr5 77805379 77805572 -74731687 + B2_Mm2 SINE B2 1 194 -1 8 1178 463 269 26 46 chr5 77805756 77805908 -74731351 - B1_Mur3 SINE Alu 0 149 1 8 1178 226 206 183 67 chr5 77805979 77806083 -74731176 + MER2B DNA MER2_type 181 296 -40 8 1178 996 299 11 33 chr5 77806273 77806546 -74730713 + B4A SINE B4 8 274 -18 8 1178 213 287 0 0 chr5 77806596 77806704 -74730555 + (TATATG)n Simple_repeat Simple_repeat 3 110 0 8 1178 276 30 0 0 chr5 77806726 77806759 -74730500 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1178 24 32 0 0 chr5 77806868 77806899 -74730360 + AT_rich Low_complexity Low_complexity 1 31 0 8 1178 366 23 0 0 chr5 77807833 77807876 -74729383 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1178 265 283 137 100 chr5 77808457 77808838 -74728421 + MLT1A1 LTR MaLR 14 408 0 8 1178 268 293 44 125 chr5 77809013 77809058 -74728201 - ID_B1 SINE B4 0 224 100 8 1178 371 291 6 8 chr5 77809058 77809167 -74728092 - PB1D10 SINE Alu -10 110 3 8 1178 189 0 0 0 chr5 77810148 77810169 -74727090 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1178 358 325 199 15 chr5 77810530 77810803 -74726456 - MLT1A0 LTR MaLR -51 323 1 8 1178 1489 213 72 38 chr5 77810834 77811181 -74726078 + ORR1D1 LTR MaLR 1 359 -15 8 1178 228 341 100 56 chr5 77811358 77811380 -74725879 + ID_B1 SINE B4 66 91 -133 8 1178 238 283 122 34 chr5 77811380 77811491 -74725768 + PB1D10 SINE Alu 2 126 -23 8 1178 792 335 68 15 chr5 77811626 77811962 -74725297 + ORR1E LTR MaLR 1 354 -5 8 1178 1371 71 16 26 chr5 77812142 77812331 -74724928 - B2_Mm2 SINE B2 -8 187 1 8 1178 23 0 0 0 chr5 77812391 77812414 -74724845 + AT_rich Low_complexity Low_complexity 1 23 0 8 1178 998 117 14 14 chr5 77812415 77812562 -74724697 - B1_Mur4 SINE Alu -1 149 3 8 1178 574 221 32 24 chr5 77812817 77812942 -74724317 + ID_B1 SINE B4 98 223 -1 8 1178 215 273 36 0 chr5 77814678 77814733 -74722526 + MIRb SINE MIR 126 182 -86 8 1178 258 329 78 35 chr5 77814789 77814931 -74722328 + ORR1E LTR MaLR 1 148 -211 8 1178 405 285 165 52 chr5 77814992 77815204 -74722055 - B3 SINE B2 0 216 1 8 1178 231 143 39 39 chr5 77816191 77816242 -74721017 + G-rich Low_complexity Low_complexity 2 52 0 8 1178 492 288 185 48 chr5 77816621 77816935 -74720324 - ORR1E LTR MaLR -2 357 1 8 1178 252 100 0 0 chr5 77816967 77817007 -74720252 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 8 1178 575 277 24 48 chr5 77817018 77817185 -74720074 - RSINE1 SINE B4 0 165 3 8 1178 608 275 40 7 chr5 77817986 77818136 -74719123 + RSINE1 SINE B4 4 158 -7 8 1178 30 27 0 0 chr5 77818168 77818205 -74719054 + AT_rich Low_complexity Low_complexity 1 37 0 8 1178 387 363 104 42 chr5 77818477 77819005 -74718254 - L1ME3B LINE L1 -353 5887 5305 8 1178 395 194 0 11 chr5 77819054 77819148 -74718111 + (TA)n Simple_repeat Simple_repeat 1 93 0 9 1178 1000 92 7 27 chr5 77819230 77819376 -74717883 - ORR1A2 LTR MaLR 0 327 185 9 1178 484 297 0 48 chr5 77819377 77819522 -74717737 - B4A SINE B4 -136 156 19 9 1178 22 0 0 0 chr5 77819665 77819687 -74717572 + AT_rich Low_complexity Low_complexity 1 22 0 9 1178 288 273 0 0 chr5 77819790 77819856 -74717403 - ID4_ SINE ID -8 75 10 9 1178 1941 114 31 31 chr5 77819861 77820179 -74717080 - ORR1A2 LTR MaLR -8 319 2 9 1178 448 313 52 68 chr5 77820844 77821094 -74716165 + MER47B DNA MER2_type 1 246 -172 9 1178 406 273 41 8 chr5 77821183 77821305 -74715954 - L1MB2 LINE L1 -85 6086 5961 9 1178 417 248 28 0 chr5 77822894 77823003 -74714256 + PB1D10 SINE Alu 1 112 -5 9 1178 243 0 0 0 chr5 77823617 77823644 -74713615 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 9 1178 23 78 0 0 chr5 77823718 77823769 -74713490 + AT_rich Low_complexity Low_complexity 1 51 0 9 1178 1140 196 0 9 chr5 77824068 77824279 -74712980 - B3 SINE B2 -7 209 1 9 1178 323 278 116 14 chr5 77825621 77825767 -74711492 + MER5B DNA MER1_type 18 178 0 9 1178 30 0 0 0 chr5 77826081 77826111 -74711148 + AT_rich Low_complexity Low_complexity 1 30 0 9 1178 423 0 0 0 chr5 77826230 77826277 -74710982 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1178 392 327 0 0 chr5 77826757 77826867 -74710392 - PB1D10 SINE Alu -7 110 1 9 1178 688 203 219 6 chr5 77828725 77828903 -74708356 + B3 SINE B2 1 216 0 9 1178 1196 149 86 9 chr5 77830540 77830750 -74706509 + URR1A DNA MER1_type 1 226 0 9 1178 1958 161 42 102 chr5 77830985 77831436 -74705823 - RMER1C Other Other -1 1341 918 9 1178 911 224 37 54 chr5 77831674 77831915 -74705344 - L1MA9 LINE L1 -282 6030 5794 9 1178 201 74 0 0 chr5 77831969 77831996 -74705263 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 9 1178 245 286 132 28 chr5 77833178 77833322 -74703937 - MIR SINE MIR -71 191 33 9 1178 390 204 0 0 chr5 77833492 77833600 -74703659 + (TG)n Simple_repeat Simple_repeat 1 108 0 9 1178 23 0 0 0 chr5 77834023 77834046 -74703213 + GC_rich Low_complexity Low_complexity 1 23 0 9 1178 24 0 0 0 chr5 77835121 77835145 -74702114 + AT_rich Low_complexity Low_complexity 1 24 0 9 1178 244 216 20 73 chr5 77835148 77835298 -74701961 + (TATAA)n Simple_repeat Simple_repeat 1 142 0 9 1178 22 35 0 0 chr5 77837357 77837386 -74699873 + AT_rich Low_complexity Low_complexity 1 29 0 9 1178 818 196 42 66 chr5 77837645 77837858 -74699401 - B3 SINE B2 0 216 9 9 1178 334 310 42 33 chr5 77837894 77838014 -74699245 - RSINE1 SINE B4 0 165 45 9 1178 2049 88 25 48 chr5 77838189 77838545 -74698714 + RLTR10B2 LTR ERVK 18 365 0 9 1178 36187 35 0 0 chr5 77838664 77844069 -74693190 + L1Md_T LINE L1 88 5589 -297 9 1178 9154 6 0 0 chr5 77844069 77845065 -74692194 + L1Md_T LINE L1 5590 6585 0 9 1178 288 290 33 86 chr5 77845850 77846001 -74691258 - LTR16C LTR ERVL -2 487 345 9 1178 393 133 0 0 chr5 77846021 77846096 -74691163 + (TG)n Simple_repeat Simple_repeat 2 76 0 9 1178 290 217 68 57 chr5 77846350 77846438 -74690821 + L1MC LINE L1 3898 3986 -2160 9 1178 827 289 86 47 chr5 77846606 77846757 -74690502 - L1M4 LINE L1 -2158 3988 3844 9 1178 1999 96 116 0 chr5 77846757 77847050 -74690209 - ORR1A2 LTR MaLR 0 327 1 9 1178 827 289 86 47 chr5 77847050 77847194 -74690065 - L1M4 LINE L1 -2303 3843 3700 9 1178 1343 101 5 11 chr5 77847194 77847385 -74689874 + B2_Mm1a SINE B2 2 191 -2 9 1178 827 289 86 47 chr5 77847385 77847574 -74689685 - L1M4 LINE L1 -2447 3699 3484 9 1178 489 17 0 0 chr5 77847580 77847638 -74689621 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 9 1178 338 94 19 0 chr5 77847638 77847691 -74689568 - B1_Mus2 SINE Alu -8 139 86 9 1178 452 171 81 10 chr5 77847746 77847845 -74689414 - MLT1B LTR MaLR 0 390 268 9 1178 438 282 89 57 chr5 77847990 77848238 -74689021 + MLT1B LTR MaLR 1 256 -134 9 1178 479 269 189 7 chr5 77848693 77848995 -74688264 + MER90a LTR ERV1 1 316 -259 9 1178 645 212 28 56 chr5 77849005 77849185 -74688074 - Tigger7 DNA MER2_type -35 2456 2282 9 1178 305 269 45 27 chr5 77849190 77849301 -74687958 - Tigger7 DNA MER2_type -2374 117 5 9 1178 232 278 0 0 chr5 77849473 77849527 -74687732 + MER90a LTR ERV1 561 614 0 9 1178 295 233 19 0 chr5 77849626 77849729 -74687530 + CT-rich Low_complexity Low_complexity 1 105 0 9 1178 259 218 154 0 chr5 77849729 77849807 -74687452 - B1F SINE Alu -7 142 53 9 1178 282 56 0 0 chr5 77850755 77850791 -74686468 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 9 1178 1443 68 11 0 chr5 77850791 77850981 -74686278 - B2_Mm1t SINE B2 -1 192 1 9 1178 4041 71 2 10 chr5 77851086 77851609 -74685650 - MURVY-LTR LTR ERV1 0 519 1 9 1178 1534 122 24 14 chr5 77852283 77852630 -74684629 + RLTR1D LTR ERV1 149 605 0 9 1178 3007 56 5 0 chr5 77852845 77853218 -74684041 - L1_Mus2 LINE L1 0 6567 6193 9 1178 3140 45 0 0 chr5 77853219 77853593 -74683666 - L1_Mus2 LINE L1 -578 5988 5615 9 1178 320 167 14 0 chr5 77854673 77854745 -74682514 + GA-rich Low_complexity Low_complexity 1 73 0 9 1178 207 153 0 0 chr5 77854755 77854828 -74682431 + (CAGA)n Simple_repeat Simple_repeat 1 73 0 9 1178 236 111 0 22 chr5 77855715 77855761 -74681498 + (GGGTG)n Simple_repeat Simple_repeat 3 47 0 9 1178 1240 34 7 0 chr5 77855800 77855946 -74681313 + B1_Mus1 SINE Alu 2 148 0 9 1178 208 0 0 59 chr5 77855946 77855980 -74681279 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 9 1178 445 262 7 187 chr5 77855980 77856290 -74680969 + RLTR11B LTR ERVK 32 285 -168 9 1179 646 236 27 14 chr5 77856787 77856933 -74680326 + B1F SINE Alu 1 148 -1 9 1179 360 0 0 0 chr5 77858642 77858682 -74678577 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1179 1350 205 59 13 chr5 77858689 77858996 -74678263 + ORR1D2 LTR MaLR 43 363 -7 9 1179 613 206 29 51 chr5 77858997 77859135 -74678124 - B1_Mur2 SINE Alu -12 137 3 9 1179 445 261 29 82 chr5 77860171 77860342 -74676917 - RSINE1 SINE B4 -1 164 3 9 1179 410 344 56 5 chr5 77860450 77860646 -74676613 - MER58A DNA MER1_type -17 207 2 9 1179 207 0 0 0 chr5 77861529 77861552 -74675707 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 9 1179 262 369 19 10 chr5 77861554 77861658 -74675601 - PB1D10 SINE Alu -8 109 5 9 1179 634 191 11 27 chr5 77861864 77862047 -74675212 + CT-rich Low_complexity Low_complexity 1 180 0 9 1179 2014 185 36 22 chr5 77862111 77862526 -74674733 - MTC LTR MaLR 0 421 1 9 1179 396 0 0 0 chr5 77863004 77863048 -74674211 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1179 1149 76 17 6 chr5 77864020 77864192 -74673067 - B2_Mm2 SINE B2 -8 187 14 9 1179 279 0 0 0 chr5 77864192 77864223 -74673036 + (TC)n Simple_repeat Simple_repeat 2 32 0 9 1179 1160 89 0 0 chr5 77864804 77864950 -74672309 + B1_Mus2 SINE Alu 2 147 0 9 1179 762 101 13 7 chr5 77865712 77865862 -74671397 + (CA)n Simple_repeat Simple_repeat 2 152 0 9 1179 248 146 33 11 chr5 77865873 77865963 -74671296 + (CA)n Simple_repeat Simple_repeat 1 92 0 9 1179 320 286 0 0 chr5 77866717 77866794 -74670465 + PB1D10 SINE Alu 27 103 -14 9 1179 6328 68 19 17 chr5 77866934 77867959 -74669300 - L1VL2 LINE L1 -1770 1845 824 9 1179 948 18 0 0 chr5 77867959 77868069 -74669190 + (TTC)n Simple_repeat Simple_repeat 2 111 0 9 1179 1145 62 7 27 chr5 77868070 77868220 -74669039 - B1_Mm SINE Alu 0 147 1 9 1179 3331 65 6 40 chr5 77868220 77868459 -74668800 - L1VL2 LINE L1 -5512 823 583 9 1179 434 265 68 0 chr5 77868459 77868576 -74668683 - RSINE1 SINE B4 -38 127 3 9 1179 678 221 22 12 chr5 77868652 77868800 -74668459 - ID_B1 SINE B4 -55 237 85 9 1179 1404 122 27 13 chr5 77869426 77869651 -74667608 + MTC LTR MaLR 184 411 -10 9 1179 297 0 0 0 chr5 77872699 77872732 -74664527 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1179 1340 225 87 17 chr5 77872890 77873234 -74664025 + MTD LTR MaLR 21 388 -31 9 1179 513 0 0 0 chr5 77873240 77873297 -74663962 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1179 255 61 0 0 chr5 77874087 77874120 -74663139 + (A)n Simple_repeat Simple_repeat 1 33 0 9 1179 375 23 0 0 chr5 77875054 77875098 -74662161 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1179 512 161 0 0 chr5 77875098 77875185 -74662074 - B1_Mus2 SINE Alu -20 127 41 9 1179 640 279 162 60 chr5 77875600 77875703 -74661556 - MER34A LTR ERV1 -11 560 461 9 1179 230 275 24 36 chr5 77875703 77875786 -74661473 - ID4 SINE ID 0 83 2 9 1179 640 279 162 60 chr5 77875786 77876083 -74661176 - MER34A LTR ERV1 -111 460 119 9 1179 369 284 43 0 chr5 77876203 77876319 -74660940 - MER34A LTR ERV1 -450 121 1 9 1179 385 225 39 70 chr5 77877361 77877490 -74659769 + MLT1A1 LTR MaLR 6 130 -278 9 1179 380 316 0 0 chr5 77877634 77877732 -74659527 + PB1D10 SINE Alu 1 98 -19 9 1179 390 21 0 0 chr5 77877764 77877811 -74659448 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 9 1179 340 235 0 69 chr5 77879062 77879149 -74658110 + ID4 SINE ID 3 83 0 9 1179 815 265 14 23 chr5 77879802 77880018 -74657241 + B3 SINE B2 1 214 -2 9 1179 298 208 211 24 chr5 77880020 77880143 -74657116 - MTEa LTR MaLR -50 329 184 9 1179 531 287 0 7 chr5 77880155 77880292 -74656967 - MTEa LTR MaLR -240 139 4 9 1179 182 358 25 0 chr5 77880977 77881058 -74656201 - MIRm SINE MIR 0 276 194 9 1179 337 276 0 39 chr5 77881106 77881208 -74656051 + MLT2B4 LTR ERVL 1 98 -458 9 1179 539 285 58 84 chr5 77881213 77881523 -74655736 + ORR1E LTR MaLR 1 302 -57 9 1179 277 161 226 0 chr5 77881523 77881585 -74655674 + B4A SINE B4 3 78 -214 9 1179 441 0 0 0 chr5 77881595 77881644 -74655615 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1179 225 0 0 0 chr5 77881868 77881893 -74655366 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 9 1179 1211 42 14 0 chr5 77881893 77882037 -74655222 - B1_Mm SINE Alu 0 147 2 9 1179 234 299 0 15 chr5 77882037 77882105 -74655154 + ORR1E LTR MaLR 313 379 0 9 1179 1717 218 52 3 chr5 77882587 77882973 -74654286 + MTD LTR MaLR 2 406 -13 1 1179 660 26 0 0 chr5 77883285 77883363 -74653896 + (GAA)n Simple_repeat Simple_repeat 2 79 0 1 1179 507 198 0 0 chr5 77883500 77883591 -74653668 - PB1D10 SINE Alu -17 100 10 1 1179 1634 137 25 0 chr5 77883751 77884035 -74653224 + MTB_Mm LTR MaLR 2 292 -115 1 1179 6064 139 44 9 chr5 77884033 77885100 -74652159 - RLTR21 LTR ERVK -468 1104 1 1 1179 361 89 0 35 chr5 77885100 77885158 -74652101 + MTB_Mm LTR MaLR 366 421 0 1 1179 344 248 114 0 chr5 77885161 77885266 -74651993 - Lx8 LINE L1 -311 7162 7046 1 1179 264 210 0 0 chr5 77885287 77885368 -74651891 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1179 238 263 38 50 chr5 77885420 77885500 -74651759 - Lx8 LINE L1 -532 6941 6863 1 1179 27 0 0 0 chr5 77885509 77885536 -74651723 + GC_rich Low_complexity Low_complexity 1 27 0 1 1179 658 290 124 39 chr5 77885540 77885999 -74651260 - L1M4 LINE L1 -971 5175 4678 1 1179 378 0 0 0 chr5 77886187 77886229 -74651030 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1179 343 264 76 15 chr5 77886230 77886361 -74650898 - RSINE1 SINE B4 -24 141 3 1 1179 238 258 45 0 chr5 77886632 77886698 -74650561 + MIRc SINE MIR 72 140 -128 1 1179 492 277 27 90 chr5 77886847 77887069 -74650190 - ID_B1 SINE B4 -3 221 14 1 1179 457 268 64 6 chr5 77887099 77887272 -74649987 - Tigger7 DNA MER2_type -23 2468 2286 1 1179 593 204 0 7 chr5 77887280 77887428 -74649831 + (TG)n Simple_repeat Simple_repeat 2 148 0 1 1179 704 255 28 78 chr5 77887543 77887798 -74649461 + MER57D LTR ERV1 154 395 -16 1 1179 639 294 18 32 chr5 77887979 77888200 -74649059 - ID_B1 SINE B4 -5 219 2 1 1179 431 296 61 0 chr5 77888234 77888366 -74648893 - B1F SINE Alu -8 141 2 1 1179 206 296 72 27 chr5 77891043 77891154 -74646105 - L2b LINE L2 -274 3101 2986 1 1179 1251 84 44 17 chr5 77891216 77891397 -74645862 + B2_Mm2 SINE B2 1 186 -9 1 1179 360 176 0 0 chr5 77892414 77892482 -74644777 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1179 408 20 0 0 chr5 77892582 77892631 -74644628 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1179 359 298 41 94 chr5 77892803 77893078 -74644181 - B4 SINE B4 0 292 52 1 1179 446 285 99 55 chr5 77893132 77893314 -74643945 + B3A SINE B2 2 191 -7 1 1179 410 355 43 69 chr5 77893336 77893711 -74643548 - Lx8 LINE L1 -2 7471 7107 1 1179 602 209 9 0 chr5 77894729 77894839 -74642420 - MER77 LTR ERVL -9 598 488 1 1179 351 0 0 0 chr5 77894875 77894914 -74642345 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1179 323 340 126 24 chr5 77894943 77895190 -74642069 + L3 LINE CR1 4044 4315 -174 1 1179 204 340 99 53 chr5 77896362 77896533 -74640726 - L3 LINE CR1 -345 4144 3966 1 1179 1299 139 5 19 chr5 77897034 77897239 -74640020 - URR1A DNA MER1_type -20 206 5 1 1179 378 0 0 0 chr5 77898735 77898777 -74638482 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1179 770 162 6 16 chr5 77898778 77898960 -74638299 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1179 266 132 0 19 chr5 77898980 77899034 -74638225 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1179 360 0 0 0 chr5 77899083 77899123 -74638136 + (TTTTA)n Simple_repeat Simple_repeat 5 44 0 1 1179 285 415 64 20 chr5 77899256 77899600 -74637659 - L2b LINE L2 -4 3371 3013 1 1179 792 160 0 0 chr5 77899755 77900053 -74637206 + (CA)n Simple_repeat Simple_repeat 1 298 0 1 1179 611 183 0 6 chr5 77900098 77900274 -74636985 + (CA)n Simple_repeat Simple_repeat 2 176 0 1 1179 262 365 98 71 chr5 77900839 77901195 -74636064 - MLT1J LTR MaLR -109 339 1 1 1179 195 226 159 16 chr5 77901244 77901307 -74635952 - MIRm SINE MIR -106 170 99 1 1179 182 37 0 36 chr5 77901716 77901744 -74635515 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1179 444 286 42 42 chr5 77901744 77901928 -74635331 - ID_B1 SINE B4 -13 211 27 1 1179 26 0 0 0 chr5 77902442 77902468 -74634791 + AT_rich Low_complexity Low_complexity 1 26 0 1 1179 348 339 74 16 chr5 77902569 77902758 -74634501 + MIR SINE MIR 29 228 -34 1 1179 261 0 0 0 chr5 77902954 77902983 -74634276 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 1179 1025 286 117 6 chr5 77903912 77904253 -74633006 + MTEa LTR MaLR 1 379 0 1 1179 309 210 16 0 chr5 77904775 77904837 -74632422 - PB1D10 SINE Alu 0 117 55 1 1179 674 332 64 20 chr5 77905050 77905345 -74631914 - MLT1A0 LTR MaLR -2 363 56 1 1179 566 0 29 0 chr5 77905554 77905623 -74631636 + (TCCC)n Simple_repeat Simple_repeat 2 72 0 1 1179 29 60 0 0 chr5 77908071 77908121 -74629138 + AT_rich Low_complexity Low_complexity 1 50 0 1 1179 21 0 0 0 chr5 77908172 77908193 -74629066 + AT_rich Low_complexity Low_complexity 1 21 0 1 1179 6845 79 10 0 chr5 77908239 77909130 -74628129 - L1_Mus4 LINE L1 0 6636 5737 1 1179 297 167 0 0 chr5 77909625 77909679 -74627580 + (CAT)n Simple_repeat Simple_repeat 2 55 0 1 1179 307 305 10 31 chr5 77909976 77910074 -74627185 + RLTR14 LTR ERV1 274 369 -13 1 1179 1037 110 14 0 chr5 77910122 77910268 -74626991 - B1_Mur4 SINE Alu 0 150 3 1 1179 242 348 62 59 chr5 77910898 77911131 -74626128 + L2b LINE L2 2939 3171 -204 1 1179 537 184 6 105 chr5 77911241 77911395 -74625864 - B1_Mus2 SINE Alu 0 149 5 1 1179 1761 296 66 15 chr5 77911448 77912165 -74625094 - L1MA5 LINE L1 -30 6270 5518 1 1179 225 260 178 38 chr5 77912932 77913127 -74624132 + MIR SINE MIR 39 252 -16 1 1179 630 71 0 0 chr5 77913993 77914077 -74623182 + (TC)n Simple_repeat Simple_repeat 1 84 0 1 1179 1554 173 42 45 chr5 77915193 77915628 -74621631 + RMER17C LTR ERVK 19 439 -519 1 1179 446 256 106 45 chr5 77918089 77918391 -74618868 + MLT1A0 LTR MaLR 10 354 -11 1 1179 1015 206 50 10 chr5 77918544 77918745 -74618514 - B3 SINE B2 -3 213 5 1 1179 382 265 94 75 chr5 77919458 77919617 -74617642 - ORR1E LTR MaLR -166 193 32 1 1179 674 178 52 7 chr5 77919804 77919940 -74617319 - B1_Mus1 SINE Alu -2 146 5 1 1179 491 222 0 20 chr5 77920104 77920205 -74617054 + B1F SINE Alu 51 149 0 1 1179 243 79 0 0 chr5 77920226 77920264 -74616995 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 1 1179 284 329 11 85 chr5 77920271 77920447 -74616812 + MLT1A0 LTR MaLR 410 572 -23 1 1179 2644 61 0 0 chr5 77920997 77921325 -74615934 + L1_Mus2 LINE L1 6239 6566 0 1 1179 296 205 46 0 chr5 77921358 77921435 -74615824 + MLT1J2 LTR MaLR 57 149 -363 1 1179 228 231 108 60 chr5 77921534 77921617 -74615642 - PB1D10 SINE Alu -8 109 23 1 1179 5090 99 24 19 chr5 77922038 77922791 -74614468 + Lx2B LINE L1 6236 6992 -8 1 1179 21 0 0 0 chr5 77924008 77924029 -74613230 + AT_rich Low_complexity Low_complexity 1 21 0 1 1179 233 331 124 45 chr5 77924093 77924270 -74612989 - LTR84a LTR ERVL 0 757 567 1 1179 848 308 11 78 chr5 77924511 77924779 -74612480 + B4 SINE B4 43 292 0 1 1179 583 164 29 0 chr5 77924800 77924971 -74612288 + (CA)n Simple_repeat Simple_repeat 2 177 0 1 1179 3916 132 18 66 chr5 77924971 77925756 -74611503 + RMER17A LTR ERVK 2 748 -3 1 1179 234 0 0 0 chr5 77925756 77925782 -74611477 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1179 378 61 0 0 chr5 77926847 77926896 -74610363 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1179 1167 254 65 76 chr5 77927253 77927636 -74609623 + MTEa LTR MaLR 1 379 0 1 1179 436 326 78 44 chr5 77928567 77928772 -74608487 - L4 LINE RTE -564 1465 1254 1 1179 305 289 139 10 chr5 77928782 77928952 -74608307 + L2c LINE L2 3208 3375 0 1 1179 561 299 111 57 chr5 77929494 77929921 -74607338 + MLT1F2 LTR MaLR 21 564 -60 1 1179 264 302 11 23 chr5 77930256 77930344 -74606915 - ORR1E LTR MaLR -272 87 1 1 1179 1219 35 0 0 chr5 77930381 77930522 -74606737 - B1_Mus1 SINE Alu -6 142 2 1 1179 285 323 70 19 chr5 77930642 77930800 -74606459 + LTR33A LTR ERVL 327 492 -28 1 1179 700 253 11 0 chr5 77930882 77931056 -74606203 - L1MA6 LINE L1 -3 6297 6122 1 1179 249 304 0 60 chr5 77931062 77931146 -74606113 - ID4 SINE ID -3 80 2 1 1179 423 0 0 0 chr5 77931659 77931706 -74605553 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1179 576 42 0 0 chr5 77931773 77931844 -74605415 + (GA)n Simple_repeat Simple_repeat 1 71 0 1 1179 600 264 180 8 chr5 77932371 77932615 -74604644 + MLT1D LTR MaLR 3 288 -217 1 1179 310 260 101 21 chr5 77932610 77932730 -74604529 + MLT1D LTR MaLR 387 621 -6 1 1179 22 0 0 0 chr5 77933458 77933480 -74603779 + AT_rich Low_complexity Low_complexity 1 22 0 1 1179 264 234 0 30 chr5 77933480 77933540 -74603719 - B1_Mur4 SINE Alu 0 150 93 1 1179 234 196 131 120 chr5 77933540 77933731 -74603528 - RLTR12A LTR ERVK 0 568 376 1 1179 348 64 0 0 chr5 77933791 77933838 -74603421 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1179 2573 75 39 31 chr5 77933838 77934197 -74603062 + L1Md_F2 LINE L1 6201 6562 -20 1 1179 285 51 0 0 chr5 77934201 77934240 -74603019 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1179 288 216 0 26 chr5 77934277 77934353 -74602906 - RLTR15 LTR ERVK -238 121 48 1 1179 206 265 7 7 chr5 77935516 77935653 -74601606 + CT-rich Low_complexity Low_complexity 1 137 0 1 1179 256 151 264 0 chr5 77935654 77935707 -74601552 - ID4_ SINE ID -13 70 4 1 1179 254 261 0 80 chr5 77935707 77935782 -74601477 - PB1D10 SINE Alu 0 117 49 1 1179 1654 269 54 55 chr5 77935887 77936659 -74600600 + L1MA7 LINE L1 5539 6331 -3 1 1179 303 28 0 0 chr5 77936659 77936695 -74600564 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1179 1771 124 122 10 chr5 77937552 77937846 -74599413 - ORR1A2 LTR MaLR 0 327 1 1 1179 444 82 0 0 chr5 77938995 77939056 -74598203 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1179 612 0 0 0 chr5 77940029 77940097 -74597162 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1179 186 103 0 0 chr5 77941075 77941104 -74596155 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1179 614 160 22 33 chr5 77941136 77941317 -74595942 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1179 261 0 0 0 chr5 77942000 77942029 -74595230 + (C)n Simple_repeat Simple_repeat 1 29 0 1 1179 513 0 0 0 chr5 77942802 77942859 -74594400 + (CAAAC)n Simple_repeat Simple_repeat 2 58 0 1 1179 7652 64 44 2 chr5 77942916 77943912 -74593347 + L1_Mus4 LINE L1 5593 6630 -6 1 1179 464 331 103 75 chr5 77944670 77944951 -74592308 + B4A SINE B4 1 289 -3 1 1179 262 233 0 40 chr5 77944967 77945043 -74592216 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1179 341 259 11 23 chr5 77945095 77945182 -74592077 - ORR1E LTR MaLR 0 359 274 1 1179 523 279 23 8 chr5 77945154 77945284 -74591975 - ID_B1 SINE B4 -13 211 80 1 1179 574 213 102 11 chr5 77945363 77945539 -74591720 - MTD LTR MaLR 0 419 228 1 1179 417 354 111 0 chr5 77945678 77945994 -74591265 + MLT1A0 LTR MaLR 4 354 -11 1 1179 355 327 105 47 chr5 77946112 77946388 -74590871 - MER21B LTR ERV1 -157 706 415 1 1179 582 330 50 34 chr5 77946259 77946557 -74590702 - MER77 LTR ERVL -25 582 280 1 1179 187 355 56 0 chr5 77946956 77947063 -74590196 + MIRb SINE MIR 39 151 -117 1 1179 248 352 16 32 chr5 77948090 77948216 -74589043 + MIRb SINE MIR 137 260 -8 1 1179 279 258 66 51 chr5 77948542 77948713 -74588546 + MLT1G1 LTR MaLR 70 254 -337 1 1179 676 130 24 0 chr5 77948920 77949043 -74588216 + CT-rich Low_complexity Low_complexity 3 128 0 1 1179 623 221 6 70 chr5 77949044 77949200 -74588059 - B1_Mur1 SINE Alu -2 147 2 1 1179 535 225 18 9 chr5 77949326 77949438 -74587821 - PB1D7 SINE Alu -1 119 7 1 1179 205 295 34 11 chr5 77950950 77951039 -74586220 + MIRc SINE MIR 59 149 -119 1 1179 240 59 0 0 chr5 77951345 77951379 -74585880 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1179 209 159 0 43 chr5 77951453 77951499 -74585760 + A-rich Low_complexity Low_complexity 1 44 0 1 1179 2749 48 9 0 chr5 77951646 77951983 -74585276 - L1_Mus1 LINE L1 0 6567 6228 1 1179 4754 151 83 4 chr5 77952653 77953607 -74583652 - RLTR25A LTR ERVK 0 1028 1 1 1179 728 305 25 0 chr5 77953793 77953996 -74583263 - ID_B1 SINE B4 -13 211 4 1 1179 282 281 100 15 chr5 77954196 77954326 -74582933 + MIRc SINE MIR 65 205 -63 1 1179 336 279 0 0 chr5 77954350 77954418 -74582841 + ID4 SINE ID 11 78 -5 1 1179 230 185 56 0 chr5 77954422 77954489 -74582770 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1179 314 330 8 25 chr5 77954709 77954827 -74582432 + MIR SINE MIR 107 222 -40 1 1179 789 158 0 0 chr5 77955614 77955753 -74581506 + GA-rich Low_complexity Low_complexity 3 141 0 1 1179 414 0 0 0 chr5 77956239 77956285 -74580974 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1179 738 284 92 13 chr5 77956288 77956527 -74580732 + Lx8 LINE L1 6195 6452 -1021 1 1179 733 217 14 48 chr5 77956529 77956737 -74580522 - RMER17C LTR ERVK -209 201 1 1 1179 1593 292 41 27 chr5 77956882 77957438 -74579821 + Lx8 LINE L1 6890 7453 -20 1 1179 279 251 22 24 chr5 77958003 77958109 -74579150 - MIRm SINE MIR -140 136 23 1 1179 2045 206 124 54 chr5 77958131 77958600 -74578659 - RMER19C LTR ERVK 0 611 171 1 1179 3747 38 0 7 chr5 77958600 77959048 -74578211 - L1Md_F2 LINE L1 -1 6581 6137 1 1179 2045 206 124 54 chr5 77959048 77959149 -74578110 - RMER19C LTR ERVK -441 170 3 1 1179 472 306 67 26 chr5 77959156 77959448 -74577811 + MLT1C LTR MaLR 78 464 -3 1 1179 204 122 0 0 chr5 77962598 77962639 -74574620 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1179 268 348 27 27 chr5 77963059 77963242 -74574017 - L3 LINE CR1 -4 4485 4303 1 1179 976 255 27 44 chr5 77963321 77963616 -74573643 - B4 SINE B4 -2 290 1 1 1179 354 188 29 0 chr5 77963653 77963722 -74573537 - B1_Mur4 SINE Alu -2 148 78 1 1179 205 309 55 31 chr5 77963727 77963854 -74573405 - L2a LINE L2 -34 3392 3263 1 1179 263 339 17 46 chr5 77963931 77964104 -74573155 - L2a LINE L2 -335 3091 2924 1 1179 661 113 20 13 chr5 77964259 77964411 -74572848 + (TG)n Simple_repeat Simple_repeat 1 153 0 1 1179 542 151 41 0 chr5 77964452 77964624 -74572635 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1179 337 147 36 9 chr5 77964642 77964752 -74572507 + (TG)n Simple_repeat Simple_repeat 1 113 0 1 1179 216 330 48 29 chr5 77965391 77965494 -74571765 + MIRb SINE MIR 4 108 -160 1 1179 39377 5 0 1 chr5 77965522 77970693 -74566566 + L1Md_A LINE L1 422 5586 -297 1 1179 9207 3 0 0 chr5 77970693 77971689 -74565570 + L1Md_A LINE L1 5587 6582 0 1 1179 441 0 0 0 chr5 77971833 77971882 -74565377 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1179 491 275 99 0 chr5 77972024 77972195 -74565064 - RMER30 DNA MER1_type -7 195 8 1 1179 1157 68 7 0 chr5 77972274 77972421 -74564838 - B1_Mus1 SINE Alu 0 148 1 1 1179 2931 68 0 2 chr5 77972421 77972817 -74564442 - MTB LTR MaLR -5 395 1 1 1179 991 225 2 208 chr5 77972931 77973218 -74564041 - ORR1D1 LTR MaLR -8 366 165 1 1179 438 20 0 0 chr5 77973218 77973269 -74563990 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1179 991 225 2 208 chr5 77973269 77973442 -74563817 - ORR1D1 LTR MaLR -210 164 1 1 1179 200 310 45 39 chr5 77973735 77973880 -74563379 - MIRm SINE MIR -17 191 37 1 1179 532 148 19 0 chr5 77974858 77974966 -74562293 + (TG)n Simple_repeat Simple_repeat 1 110 0 1 1179 903 149 0 7 chr5 77976093 77976235 -74561024 - B1_Mus2 SINE Alu -6 141 1 1 1179 371 235 47 38 chr5 77976741 77976847 -74560412 + PB1D7 SINE Alu 3 109 -11 1 1179 579 66 0 0 chr5 77978024 77978100 -74559159 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 1 1179 7347 66 4 23 chr5 77978518 77979489 -74557770 + L1Md_F3 LINE L1 5599 6551 -33 1 1179 1962 34 0 8 chr5 77979489 77979727 -74557532 + L1Md_F3 LINE L1 6335 6570 -14 1 1179 362 211 0 14 chr5 77981018 77981090 -74556169 + B4A SINE B4 219 289 -3 1 1179 185 241 93 0 chr5 77982181 77982235 -74555024 - MIR SINE MIR -89 173 115 1 1179 339 164 0 0 chr5 77983244 77983305 -74553954 + GA-rich Low_complexity Low_complexity 2 62 0 1 1179 1193 61 0 0 chr5 77983350 77983498 -74553761 - B1_Mus1 SINE Alu 0 148 1 1 1179 305 301 87 10 chr5 77983965 77984069 -74553190 - PB1D10 SINE Alu -5 112 1 1 1179 361 292 66 8 chr5 77984069 77984102 -74553157 - ID SINE ID -138 86 47 1 1179 497 288 165 15 chr5 77984888 77985305 -74551954 + L1MA4 LINE L1 5375 5902 -398 1 1179 487 260 89 0 chr5 77985751 77985897 -74551362 - MER20 DNA MER1_type -56 163 5 1 1179 4632 80 34 3 chr5 77985989 77986616 -74550643 - L1Md_F2 LINE L1 0 6582 5937 1 1179 204 288 0 0 chr5 77987445 77987518 -74549741 + T-rich Low_complexity Low_complexity 1 73 0 1 1180 213 227 23 0 chr5 77987863 77987907 -74549352 + GA-rich Low_complexity Low_complexity 2 46 0 1 1180 1904 96 7 0 chr5 77988253 77988534 -74548725 + MusHAL1 LINE L1 1983 2265 -447 1 1180 3184 16 5 5 chr5 77988653 77989020 -74548239 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1180 56303 24 16 4 chr5 77989020 77995415 -74541844 - IAPEz-int LTR ERVK 0 6481 8 1 1180 3184 16 5 5 chr5 77995415 77995782 -74541477 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1180 909 244 19 5 chr5 77995800 77996010 -74541249 - B3 SINE B2 0 216 4 1 1180 471 200 11 0 chr5 77996014 77996104 -74541155 - 4.5SRNA scRNA scRNA -2 92 2 1 1180 357 387 20 13 chr5 77996352 77996504 -74540755 + MLT1J LTR MaLR 100 252 -260 1 1180 450 0 0 0 chr5 77997543 77997593 -74539666 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1180 334 277 24 10 chr5 77998126 77998225 -74539034 - MTEa LTR MaLR -269 110 11 1 1180 244 216 65 39 chr5 77998457 77998534 -74538725 + MLT1A1 LTR MaLR 2 80 -328 1 1180 348 248 83 25 chr5 77998735 77998855 -74538404 + MLT1A1 LTR MaLR 270 396 -12 1 1180 540 207 192 0 chr5 78000046 78000105 -74537154 - L1MA8 LINE L1 -14 6298 6221 1 1180 520 14 0 28 chr5 78000105 78000176 -74537083 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1180 1178 270 133 50 chr5 78000176 78000977 -74536282 - L1MA8 LINE L1 -92 6220 5362 1 1180 699 268 29 24 chr5 78001015 78001225 -74536034 + B3 SINE B2 2 212 -4 3 1180 1193 20 0 0 chr5 78001356 78001502 -74535757 - MTA_Mm LTR MaLR 0 396 251 4 1180 421 304 142 48 chr5 78001605 78002101 -74535158 + RLTR18 LTR ERVK 31 511 -105 5 1180 3119 54 26 0 chr5 78002417 78002807 -74534452 - MTB LTR MaLR 0 400 1 6 1180 239 267 117 19 chr5 78002989 78003092 -74534167 + MIR SINE MIR 111 223 -39 7 1180 763 138 0 58 chr5 78003756 78003894 -74533365 - B1_Mus1 SINE Alu -1 147 18 8 1180 295 336 173 10 chr5 78003922 78004211 -74533048 - LTR16A LTR ERVL -21 430 95 9 1180 283 336 61 17 chr5 78004308 78004423 -74532836 + LTR88b LTR Gypsy? 705 824 -13 1 1180 21 0 0 0 chr5 78005474 78005495 -74531764 + AT_rich Low_complexity Low_complexity 1 21 0 1 1180 308 310 22 22 chr5 78005606 78005695 -74531564 - B1F1 SINE Alu -60 89 1 1 1180 198 310 204 0 chr5 78006130 78006272 -74530987 + MIR3 SINE MIR 31 201 -7 1 1180 193 324 56 0 chr5 78006664 78006735 -74530524 - L3 LINE CR1 -6 4483 4409 1 1180 719 283 153 27 chr5 78007287 78007588 -74529671 - MTE2a LTR MaLR 0 379 41 1 1180 187 29 0 79 chr5 78008730 78008768 -74528491 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 1 1180 180 0 0 0 chr5 78009726 78009746 -74527513 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1 1180 484 333 0 6 chr5 78011140 78011315 -74525944 + (TATATG)n Simple_repeat Simple_repeat 1 174 0 1 1180 588 50 0 0 chr5 78013014 78013094 -74524165 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1180 227 316 10 87 chr5 78014282 78014305 -74522954 - ID_B1 SINE B4 -127 97 2 2 1180 242 325 25 12 chr5 78014305 78014386 -74522873 - ID4_ SINE ID 0 83 2 2 1180 181 233 0 23 chr5 78014777 78014821 -74522438 - MIRb SINE MIR -9 259 217 2 1180 190 222 63 0 chr5 78014826 78014889 -74522370 + MIR SINE MIR 48 114 -148 2 1180 207 170 21 0 chr5 78014924 78014971 -74522288 + MIR SINE MIR 213 260 -2 2 1180 311 175 0 24 chr5 78015608 78015690 -74521569 + (TATG)n Simple_repeat Simple_repeat 1 80 0 2 1180 5146 81 1 25 chr5 78015701 78016103 -74521156 + L1Md_F2 LINE L1 5886 6288 -294 2 1180 3518 25 2 0 chr5 78016103 78016498 -74520761 - MTA_Mm LTR MaLR 0 396 1 2 1180 9815 17 0 0 chr5 78016498 78017596 -74519663 - MTA_Mm-int LTR MaLR 0 1098 1 2 1180 3518 25 2 0 chr5 78017596 78017991 -74519268 - MTA_Mm LTR MaLR 0 396 1 2 1180 5146 81 1 25 chr5 78017991 78018299 -74518960 + L1Md_F2 LINE L1 6289 6579 -3 2 1180 6961 61 3 50 chr5 78019089 78020086 -74517173 + MusHAL1 LINE L1 1616 2565 -147 2 1180 412 262 34 54 chr5 78020943 78021092 -74516167 + RLTR14 LTR ERV1 224 369 -13 2 1180 2818 212 17 36 chr5 78021115 78021756 -74515503 + RLTR17 LTR ERVK 1 629 -63 2 1180 27 0 0 0 chr5 78021778 78021805 -74515454 + AT_rich Low_complexity Low_complexity 1 27 0 3 1180 748 289 51 58 chr5 78021887 78022181 -74515078 + B4 SINE B4 1 292 0 3 1180 1477 149 243 3 chr5 78022204 78022500 -74514759 + ORR1B2 LTR MaLR 1 367 0 3 1180 6217 168 113 74 chr5 78022500 78023952 -74513307 + ORR1B2-int LTR MaLR 1 1509 0 3 1180 1256 169 151 125 chr5 78023952 78024237 -74513022 + ORR1B2 LTR MaLR 1 300 -67 3 1180 968 95 58 7 chr5 78024237 78024375 -74512884 - B1_Mus1 SINE Alu -2 146 2 3 1180 1256 169 151 125 chr5 78024375 78024441 -74512818 + ORR1B2 LTR MaLR 301 361 -6 3 1180 687 185 0 0 chr5 78025438 78025584 -74511675 + (CA)n Simple_repeat Simple_repeat 1 146 0 3 1180 216 158 0 0 chr5 78025583 78025621 -74511638 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 3 1180 426 159 0 0 chr5 78025664 78025752 -74511507 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 1180 422 254 78 54 chr5 78026541 78026745 -74510514 + MLT1B LTR MaLR 1 209 -181 3 1180 203 250 0 0 chr5 78027851 78027891 -74509368 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1180 359 344 56 60 chr5 78027893 78028159 -74509100 - B4A SINE B4 0 292 28 3 1180 1029 53 0 0 chr5 78028321 78028453 -74508806 + (TCCC)n Simple_repeat Simple_repeat 3 134 0 4 1180 246 338 0 0 chr5 78028540 78028620 -74508639 - Tigger5 DNA MER2_type -3 2403 2324 4 1180 189 0 0 0 chr5 78028632 78028653 -74508606 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 4 1180 1217 42 0 0 chr5 78028655 78028797 -74508462 - B1_Mus1 SINE Alu -6 142 1 4 1180 255 268 83 72 chr5 78029023 78029258 -74508001 - RSINE1 SINE B4 -58 234 4 4 1180 288 329 42 38 chr5 78029261 78029501 -74507758 - L1MA6 LINE L1 -16 6284 6044 4 1180 589 326 0 0 chr5 78029581 78029719 -74507540 + RSINE1 SINE B4 6 143 -22 4 1180 750 324 70 21 chr5 78029766 78030192 -74507067 + L1MA5 LINE L1 5484 5930 -370 4 1180 355 380 11 16 chr5 78030330 78030517 -74506742 - Tigger5 DNA MER2_type -2164 242 57 4 1180 369 0 0 0 chr5 78031297 78031338 -74505921 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1180 321 26 0 0 chr5 78031338 78031375 -74505884 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1180 378 313 16 22 chr5 78032491 78032647 -74504612 - MLT1H2 LTR MaLR -14 541 358 5 1180 28 29 0 0 chr5 78033705 78033740 -74503519 + AT_rich Low_complexity Low_complexity 1 35 0 5 1180 701 70 0 10 chr5 78033744 78033845 -74503414 + (TTTTC)n Simple_repeat Simple_repeat 1 100 0 5 1180 1060 45 15 0 chr5 78033846 78033978 -74503281 - B1_Mus1 SINE Alu -13 135 2 5 1180 4139 42 10 36 chr5 78033978 78034500 -74502759 - L1_Mus1 LINE L1 -9 6558 6051 5 1180 288 280 152 78 chr5 78034636 78034892 -74502367 + B4 SINE B4 5 279 -13 5 1180 762 175 0 0 chr5 78035065 78035208 -74502051 + (TCTG)n Simple_repeat Simple_repeat 4 146 0 5 1180 477 0 0 0 chr5 78035208 78035261 -74501998 + (CCCG)n Simple_repeat Simple_repeat 3 55 0 5 1180 525 16 0 0 chr5 78035274 78035336 -74501923 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 5 1180 1198 261 88 16 chr5 78035614 78036000 -74501259 + MTD LTR MaLR 3 416 -3 5 1180 271 267 19 47 chr5 78036371 78036477 -74500782 - L2a LINE L2 -2 3424 3322 6 1180 534 70 0 0 chr5 78036928 78036999 -74500260 + (TCCA)n Simple_repeat Simple_repeat 1 71 0 6 1180 351 0 0 0 chr5 78037683 78037722 -74499537 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1180 271 91 36 18 chr5 78037730 78037786 -74499473 + (CAAAA)n Simple_repeat Simple_repeat 2 58 0 6 1180 516 32 0 0 chr5 78038743 78038805 -74498454 + (CCAA)n Simple_repeat Simple_repeat 1 62 0 6 1180 3268 69 2 9 chr5 78040272 78040709 -74496550 - L1Md_F2 LINE L1 -1 6581 6148 6 1180 288 0 0 0 chr5 78041298 78041330 -74495929 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1180 1278 261 21 9 chr5 78042152 78042488 -74494771 + MTE2b LTR MaLR 38 377 -2 6 1180 262 293 0 0 chr5 78042495 78042553 -74494706 - PB1D10 SINE Alu -40 77 20 6 1180 1634 206 160 38 chr5 78042843 78043445 -74493814 + RMER19A LTR ERVK 1 722 -15 6 1180 503 252 118 35 chr5 78043552 78043696 -74493563 - MTE2b LTR MaLR -52 327 172 7 1180 546 244 76 62 chr5 78043710 78043824 -74493435 + B3 SINE B2 2 126 -90 7 1180 828 0 0 0 chr5 78043824 78043916 -74493343 + (TTC)n Simple_repeat Simple_repeat 3 94 0 7 1180 1158 29 0 0 chr5 78043917 78044057 -74493202 - L1Md_F3 LINE L1 -15 6569 6430 7 1180 546 244 76 62 chr5 78044057 78044084 -74493175 + B3 SINE B2 127 147 -69 7 1180 321 361 8 30 chr5 78044084 78044218 -74493041 - MIRb SINE MIR -103 165 35 7 1180 227 342 0 0 chr5 78044888 78044961 -74492298 - MIR SINE MIR -79 183 111 7 1180 266 360 32 0 chr5 78045161 78045286 -74491973 - MIR SINE MIR -118 144 16 7 1180 387 295 52 19 chr5 78046151 78046408 -74490851 + L1M5 LINE L1 5211 5472 -652 7 1180 1502 326 53 62 chr5 78046427 78047140 -74490119 + MER44C DNA MER2_type 22 728 -5 7 1180 1896 164 6 16 chr5 78047216 78047585 -74489674 - ORR1B2 LTR MaLR -10 374 17 7 1180 267 280 110 0 chr5 78047585 78047685 -74489574 - Lx5 LINE L1 -21 7029 6919 8 1180 246 269 15 0 chr5 78047823 78047890 -74489369 + MER5A1 DNA MER1_type 44 111 -55 8 1180 737 194 0 6 chr5 78048055 78048236 -74489023 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1180 252 130 0 0 chr5 78048294 78048340 -74488919 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1180 709 292 160 13 chr5 78048513 78048825 -74488434 - ORR1E LTR MaLR 0 359 2 8 1180 183 42 0 0 chr5 78049294 78049318 -74487941 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 8 1180 180 315 13 27 chr5 78049846 78049921 -74487338 - MIR SINE MIR -94 114 41 8 1180 1222 264 53 32 chr5 78051488 78051962 -74485297 - L1MC1 LINE L1 -2 6331 5848 8 1180 3973 134 17 3 chr5 78051955 78052606 -74484653 + Lx3C LINE L1 4204 4863 -1014 8 1180 29901 30 0 1 chr5 78052606 78058073 -74479186 + L1Md_Gf LINE L1 76 5637 -249 8 1180 13688 22 0 1 chr5 78058069 78059635 -74477624 + L1_Mm LINE L1 4070 5634 -249 8 1180 13251 21 0 1 chr5 78059631 78061150 -74476109 + L1Md_T LINE L1 4070 5586 -297 9 1180 8946 8 10 0 chr5 78061150 78062136 -74475123 + L1Md_T LINE L1 5587 6582 0 9 1180 7532 140 20 40 chr5 78062137 78064244 -74473015 + Lx3C LINE L1 4862 6904 -72 8 1180 378 0 0 0 chr5 78064244 78064286 -74472973 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1180 477 0 0 0 chr5 78064286 78064338 -74472921 + (GA)n Simple_repeat Simple_repeat 1 53 0 9 1180 7532 147 34 74 chr5 78064338 78064402 -74472857 + Lx3C LINE L1 6905 6973 -3 8 1180 180 308 38 13 chr5 78064898 78064977 -74472282 + L2b LINE L2 3076 3156 -219 9 1180 385 136 0 0 chr5 78065380 78065442 -74471817 + MER53 DNA hAT 3 64 -129 9 1180 617 313 54 15 chr5 78065442 78065782 -74471477 - MLT1A1 LTR MaLR 0 365 23 9 1180 3238 53 5 21 chr5 78066401 78066822 -74470437 + L1_Mus1 LINE L1 6154 6567 0 9 1180 419 304 14 20 chr5 78067164 78067312 -74469947 - RSINE1 SINE B4 -12 153 7 9 1180 501 17 0 0 chr5 78068437 78068495 -74468764 + (TCCC)n Simple_repeat Simple_repeat 3 60 0 9 1180 3170 73 2 2 chr5 78069433 78069833 -74467426 + MTB LTR MaLR 1 400 0 9 1180 225 0 0 0 chr5 78070878 78070903 -74466356 + (TA)n Simple_repeat Simple_repeat 1 25 0 1 1180 198 103 0 0 chr5 78071062 78071091 -74466168 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1180 240 86 0 0 chr5 78071121 78071156 -74466103 + (TA)n Simple_repeat Simple_repeat 1 35 0 1 1180 363 297 7 0 chr5 78072217 78072365 -74464894 + (TG)n Simple_repeat Simple_repeat 2 150 0 1 1180 207 146 0 0 chr5 78072378 78072419 -74464840 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1180 29 28 0 0 chr5 78074308 78074344 -74462915 + AT_rich Low_complexity Low_complexity 1 36 0 1 1180 2097 29 4 0 chr5 78074344 78074589 -74462670 - L1Md_F2 LINE L1 -13 6569 6324 1 1180 801 274 50 63 chr5 78074656 78074956 -74462303 + Lx8 LINE L1 7027 7322 -151 1 1180 243 146 0 0 chr5 78074969 78075010 -74462249 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1180 777 320 75 50 chr5 78075046 78075523 -74461736 - Tigger13a DNA MER2_type -272 499 11 1 1180 429 266 49 10 chr5 78075533 78075688 -74461571 - L1MA5 LINE L1 0 6303 6143 1 1180 261 263 21 9 chr5 78075952 78076064 -74461195 - L1MA6 LINE L1 -141 6159 6037 1 1180 290 246 0 0 chr5 78076051 78076120 -74461139 + L1MA6 LINE L1 5865 5933 -367 1 1180 896 217 116 5 chr5 78076577 78076737 -74460522 + URR1B DNA MER1_type 5 186 -39 1 1180 226 0 59 0 chr5 78076737 78076771 -74460488 + (TTAA)n Simple_repeat Simple_repeat 4 39 0 1 1180 896 217 116 5 chr5 78076771 78076809 -74460450 + URR1B DNA MER1_type 187 224 -1 1 1180 441 255 64 11 chr5 78077936 78078110 -74459149 + B4A SINE B4 1 230 -62 1 1180 2604 36 0 3 chr5 78078110 78078416 -74458843 - L1_Mus1 LINE L1 -645 5922 5618 1 1180 4339 52 10 54 chr5 78078413 78078487 -74458772 + L1_Mus1 LINE L1 5938 6011 -556 1 1180 1167 88 0 0 chr5 78078487 78078635 -74458624 + B1_Mus1 SINE Alu 1 148 0 1 1180 4339 52 10 54 chr5 78078635 78078649 -74458610 + L1_Mus1 LINE L1 6012 6012 -555 1 1180 219 36 0 0 chr5 78078649 78078677 -74458582 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1180 4339 52 10 54 chr5 78078677 78079177 -74458082 + L1_Mus1 LINE L1 6012 6501 -66 1 1180 422 36 0 18 chr5 78079183 78079240 -74458019 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1180 683 204 14 0 chr5 78079241 78079383 -74457876 - RLTR20D LTR ERVK -104 464 321 1 1180 1290 127 0 5 chr5 78079380 78079585 -74457674 - RLTR20D LTR ERVK -364 204 1 1 1180 260 325 100 31 chr5 78079612 78079742 -74457517 + MLT1D LTR MaLR 252 390 -115 1 1180 1027 107 112 6 chr5 78081235 78081405 -74455854 + B2_Mm2 SINE B2 1 188 -7 1 1180 249 393 6 39 chr5 78081432 78081588 -74455671 + MLT1K LTR MaLR 16 166 -429 1 1180 1134 0 0 0 chr5 78081819 78081945 -74455314 + (TTTCC)n Simple_repeat Simple_repeat 5 130 0 1 1180 348 24 0 0 chr5 78081946 78081987 -74455272 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 1 1180 1166 223 170 17 chr5 78082682 78083257 -74454002 + RMER1C Other Other 679 1342 0 1 1180 6929 68 16 1 chr5 78083849 78084736 -74452523 + L1_Mus3 LINE L1 5732 6631 -7 1 1180 294 252 18 61 chr5 78084759 78084873 -74452386 - Lx8 LINE L1 -12 7461 7353 1 1180 493 188 0 0 chr5 78084940 78085025 -74452234 - Lx8 LINE L1 -235 7238 7154 1 1180 196 182 57 0 chr5 78085089 78085177 -74452082 + (TA)n Simple_repeat Simple_repeat 2 94 0 1 1180 808 275 150 15 chr5 78085466 78085805 -74451454 - Lx8 LINE L1 -4 7469 7085 1 1180 211 0 88 0 chr5 78085946 78085980 -74451279 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1 1180 466 265 119 5 chr5 78085980 78086181 -74451078 - ID_B1 SINE B4 0 224 1 1 1180 265 216 56 22 chr5 78086778 78086868 -74450391 + CT-rich Low_complexity Low_complexity 3 95 0 1 1180 467 60 0 15 chr5 78086977 78087045 -74450214 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 1180 279 246 121 45 chr5 78087212 78087344 -74449915 + MIR SINE MIR 16 157 -105 1 1180 944 332 67 38 chr5 78087995 78088440 -74448819 - MLT1G LTR MaLR -13 578 121 1 1180 1498 74 79 0 chr5 78088698 78088900 -74448359 - L1_Mus1 LINE L1 -1 6566 6349 1 1180 245 91 0 0 chr5 78088900 78088933 -74448326 + L1_Mus1 LINE L1 6295 6327 -239 1 1180 471 78 0 0 chr5 78088961 78089025 -74448234 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1180 534 297 48 0 chr5 78089031 78089176 -74448083 - RSINE1 SINE B4 -2 163 12 1 1180 1293 137 9 14 chr5 78089522 78089744 -74447515 + URR1A DNA MER1_type 6 226 0 1 1180 1292 9 0 40 chr5 78089831 78090184 -74447075 + (CAGCC)n Simple_repeat Simple_repeat 1 339 0 1 1180 332 317 34 7 chr5 78090926 78091072 -74446187 - L1M5 LINE L1 -303 5821 5672 1 1180 540 0 0 0 chr5 78091902 78091962 -74445297 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1180 230 297 132 0 chr5 78091974 78092065 -74445194 - PB1D10 SINE Alu -14 103 1 1 1180 248 305 89 41 chr5 78092408 78092531 -74444728 + MLT1J1 LTR MaLR 283 411 -33 1 1180 6112 27 0 0 chr5 78092901 78093600 -74443659 - L1Md_A LINE L1 0 6582 5884 1 1180 2287 200 28 19 chr5 78094288 78094817 -74442442 + RMER5 LTR ERV1 1 534 0 1 1180 740 179 81 29 chr5 78094889 78094903 -74442356 - B2_Mm2 SINE B2 -11 184 171 1 1180 2234 107 44 30 chr5 78094903 78095270 -74441989 + Lx LINE L1 6275 6646 -8 1 1180 740 179 81 29 chr5 78095270 78095428 -74441831 - B2_Mm2 SINE B2 -25 170 3 1 1180 261 0 0 0 chr5 78095482 78095511 -74441748 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1180 2154 225 241 5 chr5 78096961 78097608 -74439651 - RMER1A Other Other 0 1066 217 1 1180 456 19 0 0 chr5 78097608 78097661 -74439598 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1180 2154 250 109 60 chr5 78097661 78098380 -74438879 - RMER1A Other Other -559 507 1 1 1180 211 336 8 48 chr5 78100076 78100201 -74437058 + MIRb SINE MIR 40 159 -109 1 1180 272 365 117 6 chr5 78102205 78102384 -74434875 - MIRc SINE MIR -20 248 50 1 1180 836 244 38 19 chr5 78102550 78102759 -74434500 + B3 SINE B2 4 216 0 1 1180 380 169 12 72 chr5 78102904 78102987 -74434272 - B1_Mur2 SINE Alu -54 95 18 1 1180 206 133 0 0 chr5 78104502 78104532 -74432727 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1180 866 249 119 56 chr5 78105039 78105307 -74431952 + B4 SINE B4 8 292 0 1 1180 187 322 95 70 chr5 78105505 78105858 -74431401 - L2c LINE L2 -2 3373 3011 1 1180 206 304 277 0 chr5 78105957 78106069 -74431190 - L2c LINE L2 -560 2859 2717 1 1180 245 111 0 43 chr5 78106257 78106304 -74430955 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 1 1180 269 268 37 0 chr5 78106312 78106394 -74430865 + (TCTA)n Simple_repeat Simple_repeat 3 87 0 1 1180 495 48 0 0 chr5 78106400 78106462 -74430797 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 1 1180 191 350 92 5 chr5 78106689 78106884 -74430375 - L2c LINE L2 -1074 2345 2134 1 1180 507 17 0 0 chr5 78106906 78106966 -74430293 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1180 477 0 0 0 chr5 78107198 78107251 -74430008 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1180 317 293 163 7 chr5 78108599 78108740 -74428519 - MER5A DNA MER1_type -1 188 26 1 1180 324 242 0 0 chr5 78108740 78108835 -74428424 + (CTG)n Simple_repeat Simple_repeat 1 95 0 1 1180 244 326 51 117 chr5 78109139 78109413 -74427846 + ORR1E LTR MaLR 99 354 -5 1 1180 273 240 0 0 chr5 78109587 78109609 -74427650 + polypurine Low_complexity Low_complexity 1 22 0 1 1180 486 0 0 0 chr5 78109609 78109663 -74427596 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1180 273 240 0 0 chr5 78109663 78109715 -74427544 + polypurine Low_complexity Low_complexity 23 74 0 1 1180 631 71 10 10 chr5 78110919 78111018 -74426241 + (TCC)n Simple_repeat Simple_repeat 2 100 0 1 1180 4844 118 1 45 chr5 78111192 78112426 -74424833 - L1VL4 LINE L1 -3989 1894 725 1 1180 469 260 26 13 chr5 78112406 78112562 -74424697 - L1VL4 LINE L1 -5784 832 675 1 1180 358 184 112 178 chr5 78112644 78112796 -74424463 - L1VL1 LINE L1 -6065 357 216 1 1180 1548 156 8 8 chr5 78112800 78113065 -74424194 + L1_Mur1 LINE L1 4500 4764 -1122 1 1180 1082 195 0 15 chr5 78113211 78113409 -74423850 + Lx2B LINE L1 6457 6651 -349 1 1180 428 252 64 18 chr5 78113456 78113626 -74423633 + MLT1A1 LTR MaLR 232 395 -13 1 1180 341 309 8 8 chr5 78113653 78113780 -74423479 - L1M4c LINE L1 -4747 1637 1511 1 1180 1418 158 22 26 chr5 78114041 78114313 -74422946 + RLTR17 LTR ERVK 1 271 -421 1 1180 866 171 5 62 chr5 78114311 78114504 -74422755 + RLTR17 LTR ERVK 510 691 -1 1 1180 346 283 24 55 chr5 78114599 78114726 -74422533 + ORR1E LTR MaLR 1 123 -236 1 1180 299 261 187 30 chr5 78114762 78114896 -74422363 + ORR1E LTR MaLR 225 379 0 1 1180 1483 66 0 10 chr5 78115559 78115757 -74421502 - L1Md_F2 LINE L1 -12 6570 6375 1 1180 434 304 37 77 chr5 78115940 78116343 -74420916 - L1M2 LINE L1 -2311 3832 3446 1 1180 284 0 0 47 chr5 78116356 78116399 -74420860 - B1_Mm SINE Alu -1 146 106 1 1180 210 37 0 0 chr5 78117711 78117738 -74419521 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1180 322 347 66 8 chr5 78117778 78117900 -74419359 - RSINE1 SINE B4 -26 139 11 1 1181 915 82 0 0 chr5 78119010 78119144 -74418115 + (GA)n Simple_repeat Simple_repeat 2 135 0 1 1181 3780 76 8 4 chr5 78120511 78121011 -74416248 + L1_Mus2 LINE L1 6061 6562 -4 1 1181 305 220 130 11 chr5 78121591 78121683 -74415576 - PB1D10 SINE Alu -1 116 14 1 1181 958 127 0 18 chr5 78122219 78122388 -74414871 + (TTCTC)n Simple_repeat Simple_repeat 3 168 0 1 1181 578 131 0 10 chr5 78122388 78122488 -74414771 + (TTCC)n Simple_repeat Simple_repeat 3 101 0 1 1181 3187 102 11 2 chr5 78122488 78122949 -74414310 - L1_Mus3 LINE L1 0 6638 6174 1 1181 381 278 45 28 chr5 78123100 78123341 -74413918 - L1M2 LINE L1 -762 5118 4904 1 1181 5506 64 4 0 chr5 78123651 78124338 -74412921 + L1_Mus2 LINE L1 5877 6566 0 1 1181 35941 47 3 3 chr5 78124424 78129789 -74407470 + L1Md_T LINE L1 126 5589 -297 1 1181 8526 38 0 0 chr5 78129789 78130785 -74406474 + L1Md_T LINE L1 5590 6585 0 1 1181 238 316 102 0 chr5 78131111 78131209 -74406050 - B3A SINE B2 -33 165 58 1 1181 963 134 74 11 chr5 78132076 78132265 -74404994 + RLTR41 LTR ERV1 246 446 0 1 1181 649 283 101 32 chr5 78132589 78132867 -74404392 + MER34A1 LTR ERV1 183 479 -108 1 1181 1026 84 0 0 chr5 78132873 78133015 -74404244 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 1 1181 352 0 42 0 chr5 78133621 78133669 -74403590 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1181 890 24 32 0 chr5 78133669 78133794 -74403465 + (GA)n Simple_repeat Simple_repeat 2 130 0 1 1181 1136 291 53 28 chr5 78133891 78134280 -74402979 - Lx6 LINE L1 -26 7434 7095 1 1181 1456 179 94 0 chr5 78134278 78134629 -74402630 - L1_Mur2 LINE L1 -4236 1641 1258 1 1181 414 0 0 0 chr5 78134890 78134936 -74402323 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1181 523 235 9 9 chr5 78134936 78135052 -74402207 - B1_Mur3 SINE Alu -33 116 1 2 1181 270 210 34 152 chr5 78134949 78135067 -74402192 - MT2B LTR ERVL -345 256 153 2 1181 266 298 16 16 chr5 78135070 78135196 -74402063 + L1M4 LINE L1 4913 5038 -1108 2 1181 301 275 0 8 chr5 78135968 78136105 -74401154 + B3A SINE B2 3 172 -44 2 1181 1794 139 0 91 chr5 78136105 78136252 -74401007 + MERVK26-int LTR ERVK 6633 6754 -165 2 1181 2751 152 23 0 chr5 78136252 78136727 -74400532 - Lx2 LINE L1 -1 6996 6511 2 1181 1794 139 0 91 chr5 78136727 78136888 -74400371 + MERVK26-int LTR ERVK 6755 6913 -6 2 1181 296 290 48 59 chr5 78137058 78137092 -74400167 + L1M2 LINE L1 5461 5492 -808 2 1181 1080 122 0 0 chr5 78137092 78137240 -74400019 + B1_Mus1 SINE Alu 1 148 0 2 1181 296 286 69 65 chr5 78137240 78137401 -74399858 + L1M2 LINE L1 5493 5660 -640 2 1181 6619 73 15 32 chr5 78137401 78138293 -74398966 + L1Md_F2 LINE L1 5694 6582 0 2 1181 242 286 69 65 chr5 78138293 78138313 -74398946 + L1M2 LINE L1 5661 5678 -622 2 1181 207 0 0 0 chr5 78138523 78138546 -74398713 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1181 210 71 0 0 chr5 78138546 78138573 -74398686 + (CG)n Simple_repeat Simple_repeat 2 29 0 2 1181 279 264 107 7 chr5 78139100 78139249 -74398010 + L1M4 LINE L1 5312 5475 -649 2 1181 746 248 111 47 chr5 78139626 78139905 -74397354 + MTEb LTR MaLR 83 379 0 2 1181 611 269 77 52 chr5 78139927 78140250 -74397009 + L1MA6 LINE L1 5952 6297 0 2 1181 565 229 169 0 chr5 78142577 78142743 -74394516 - B4A SINE B4 -98 194 1 2 1181 311 370 67 0 chr5 78142956 78143091 -74394168 - MER58A DNA MER1_type -5 219 76 2 1181 1104 282 56 6 chr5 78143103 78143447 -74393812 - MLT1A0 LTR MaLR 0 408 4 2 1181 2958 115 9 2 chr5 78143486 78143930 -74393329 + Lx LINE L1 6201 6647 -7 2 1181 402 293 81 22 chr5 78144445 78144581 -74392678 - B4A SINE B4 -12 280 137 2 1181 1151 334 56 25 chr5 78144976 78145458 -74391801 + MLT2B3 LTR ERVL 1 497 -57 2 1181 405 0 0 0 chr5 78145467 78145512 -74391747 + (TATG)n Simple_repeat Simple_repeat 2 46 0 2 1181 1025 67 11 27 chr5 78145589 78145772 -74391487 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1181 266 127 22 0 chr5 78145787 78145841 -74391418 + MLT2B3 LTR ERVL 507 561 -2 2 1181 4082 191 44 1 chr5 78146186 78146553 -74390706 + Lx9 LINE L1 6600 6990 -654 2 1181 360 0 0 0 chr5 78146553 78146593 -74390666 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 1181 4082 191 44 1 chr5 78146593 78147015 -74390244 + Lx9 LINE L1 6991 7422 -222 2 1181 555 105 8 26 chr5 78147039 78147156 -74390103 + (TATG)n Simple_repeat Simple_repeat 2 116 0 2 1181 506 16 16 0 chr5 78147156 78147218 -74390041 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 2 1181 25 65 0 0 chr5 78147234 78147280 -74389979 + AT_rich Low_complexity Low_complexity 1 46 0 2 1181 284 283 47 0 chr5 78147394 78147500 -74389759 + MER53 DNA hAT 1 111 -82 2 1181 360 324 0 0 chr5 78147877 78147979 -74389280 - PB1D10 SINE Alu -9 108 7 2 1181 221 246 0 17 chr5 78147927 78147985 -74389274 - B4A SINE B4 -149 143 87 2 1181 471 78 0 0 chr5 78149208 78149272 -74387987 + (TATG)n Simple_repeat Simple_repeat 3 66 0 2 1181 218 189 0 0 chr5 78149272 78149309 -74387950 + (CCTA)n Simple_repeat Simple_repeat 4 40 0 2 1181 1449 66 0 0 chr5 78149315 78149576 -74387683 + (TCTA)n Simple_repeat Simple_repeat 1 261 0 2 1181 1124 235 12 8 chr5 78149583 78149832 -74387427 - Lx6 LINE L1 -26 7434 7185 2 1181 268 47 23 0 chr5 78149857 78149900 -74387359 - B1_Mus2 SINE Alu 0 147 104 2 1181 410 225 0 9 chr5 78149903 78150015 -74387244 + (TATATG)n Simple_repeat Simple_repeat 4 114 0 2 1181 1079 95 0 7 chr5 78150025 78150174 -74387085 - B1_Mus1 SINE Alu 0 148 1 2 1181 499 277 8 0 chr5 78150176 78150306 -74386953 + MER5B DNA MER1_type 41 171 -7 2 1181 216 200 22 0 chr5 78150458 78150503 -74386756 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1181 439 278 88 112 chr5 78150533 78150829 -74386430 - B4A SINE B4 -2 290 2 2 1181 228 67 0 0 chr5 78151674 78151704 -74385555 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 2 1181 984 227 249 16 chr5 78152453 78152593 -74384666 + MTEa LTR MaLR 1 189 -190 2 1181 519 17 0 0 chr5 78152593 78152653 -74384606 + (GA)n Simple_repeat Simple_repeat 1 60 0 2 1181 984 227 249 16 chr5 78152653 78152817 -74384442 + MTEa LTR MaLR 190 375 -4 2 1181 2628 146 38 2 chr5 78153226 78153653 -74383606 + Lx4B LINE L1 6507 6948 -110 2 1181 839 148 0 7 chr5 78153844 78153994 -74383265 + CT-rich Low_complexity Low_complexity 1 149 0 2 1181 920 260 154 10 chr5 78154070 78154459 -74382800 + L1MA9 LINE L1 5868 6312 0 2 1181 207 0 0 0 chr5 78155974 78155997 -74381262 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1181 477 268 81 11 chr5 78156624 78156798 -74380461 + MIR SINE MIR 77 262 0 2 1181 299 246 14 0 chr5 78157982 78158051 -74379208 - ID_B1 SINE B4 -53 171 102 2 1181 262 337 11 0 chr5 78158051 78158071 -74379188 - PB1D10 SINE Alu -27 90 1 2 1181 305 330 113 50 chr5 78161677 78162203 -74375056 - L2a LINE L2 -2 3424 2831 2 1181 534 279 30 18 chr5 78162212 78162376 -74374883 - MLT1A0 LTR MaLR -2 363 198 2 1181 1884 221 9 17 chr5 78162459 78162878 -74374381 - MTD LTR MaLR 0 419 4 2 1181 266 227 26 60 chr5 78162917 78163012 -74374247 + (TTTA)n Simple_repeat Simple_repeat 3 93 0 2 1181 678 163 83 23 chr5 78163012 78163144 -74374115 - B1_Mus1 SINE Alu -6 142 3 2 1181 266 227 26 60 chr5 78163144 78163165 -74374094 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2 1181 185 178 0 22 chr5 78163166 78163212 -74374047 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1181 967 228 68 146 chr5 78163436 78163847 -74373412 + MTE2a LTR MaLR 1 379 0 2 1181 383 330 114 15 chr5 78163981 78164252 -74373007 - L2a LINE L2 -588 2831 2534 2 1181 205 271 0 0 chr5 78164457 78164505 -74372754 - L2a LINE L2 -1286 2133 2086 2 1181 728 120 7 0 chr5 78164756 78164906 -74372353 + (GA)n Simple_repeat Simple_repeat 2 152 0 2 1181 566 326 82 6 chr5 78164968 78165286 -74371973 - L2a LINE L2 -1791 1628 1287 2 1181 3634 171 53 13 chr5 78165480 78166194 -74371065 + Lx2B LINE L1 5751 6525 -475 2 1181 208 204 23 0 chr5 78166609 78166653 -74370606 + L2c LINE L2 3272 3316 -71 2 1181 192 261 71 14 chr5 78166622 78166692 -74370567 + MIRm SINE MIR 160 233 -43 2 1181 257 0 30 0 chr5 78167141 78167174 -74370085 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1181 514 281 35 17 chr5 78168439 78168613 -74368646 - MLT2B4 LTR ERVL -278 278 102 2 1181 207 204 0 0 chr5 78168613 78168657 -74368602 + CT-rich Low_complexity Low_complexity 1 44 0 2 1181 1070 102 0 0 chr5 78168658 78168805 -74368454 - B1_Mus1 SINE Alu 0 148 2 2 1181 279 281 0 86 chr5 78168812 78168917 -74368342 - MLT2B4 LTR ERVL -445 111 16 2 1181 236 278 0 0 chr5 78168918 78168972 -74368287 - MIR SINE MIR -177 85 32 2 1181 771 318 51 69 chr5 78169245 78169620 -74367639 - MTEa LTR MaLR -2 377 10 2 1181 478 333 67 22 chr5 78170083 78170454 -74366805 - L2 LINE L2 -420 2999 2612 2 1181 9687 84 30 5 chr5 78170502 78172062 -74365197 + Lx3A LINE L1 5387 6980 -1 2 1181 222 192 0 0 chr5 78173041 78173093 -74364166 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1181 1376 78 6 6 chr5 78173455 78173636 -74363623 - B2_Mm2 SINE B2 -14 181 1 2 1181 443 201 200 20 chr5 78173965 78174140 -74363119 - ORR1D2 LTR MaLR -2 368 154 2 1181 308 130 0 0 chr5 78174146 78174192 -74363067 - ORR1B1 LTR MaLR -3 391 346 2 1181 256 136 0 0 chr5 78174183 78174227 -74363032 - ORR1B1 LTR MaLR -346 48 5 2 1181 3823 170 13 3 chr5 78174231 78174920 -74362339 - ORR1B1-int LTR MaLR -1 1508 813 2 1181 241 216 56 47 chr5 78175038 78175145 -74362114 - Lx9 LINE L1 -15 7629 7522 2 1181 504 32 0 0 chr5 78175149 78175211 -74362048 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1181 252 0 0 0 chr5 78175313 78175341 -74361918 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1181 441 0 0 0 chr5 78175341 78175389 -74361870 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1181 238 138 17 17 chr5 78176144 78176203 -74361056 + G-rich Low_complexity Low_complexity 1 59 0 2 1181 232 362 92 24 chr5 78177500 78177664 -74359595 + BLACKJACK DNA AcHobo 256 430 -2514 2 1181 2653 132 4 26 chr5 78177686 78178138 -74359121 - Lx2A LINE L1 0 7008 6567 2 1181 505 285 44 6 chr5 78178191 78178371 -74358888 - MTE2a LTR MaLR 0 379 193 2 1181 3051 67 7 54 chr5 78178415 78178842 -74358417 - MTB_Mm LTR MaLR 0 407 1 2 1181 38662 45 2 6 chr5 78178871 78185055 -74352204 - L1_Mus1 LINE L1 0 6567 416 2 1181 3950 124 23 5 chr5 78185057 78186104 -74351155 - L1Md_F LINE L1 -4314 1569 467 2 1181 264 319 56 111 chr5 78186140 78186320 -74350939 - MTE2a LTR MaLR -209 170 1 2 1181 1943 155 3 58 chr5 78186331 78186674 -74350585 - ORR1A4 LTR MaLR -2 327 4 2 1181 2473 85 188 0 chr5 78187112 78187512 -74349747 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1181 4100 92 36 26 chr5 78187514 78188230 -74349029 + IAPEz-int LTR ERVK 3 662 -5819 2 1181 2128 97 0 0 chr5 78188230 78188508 -74348751 + IAPEz-int LTR ERVK 1359 1636 -4845 2 1181 6157 46 3 19 chr5 78188507 78189265 -74347994 + IAPEz-int LTR ERVK 5736 6481 0 2 1181 2460 90 188 0 chr5 78189265 78189665 -74347594 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1181 327 261 19 14 chr5 78189730 78189845 -74347414 - MTEb LTR MaLR -3 376 264 2 1181 242 128 43 0 chr5 78189920 78189967 -74347292 + G-rich Low_complexity Low_complexity 4 52 0 2 1181 257 368 43 50 chr5 78189967 78190107 -74347152 - MTEb LTR MaLR -168 191 53 2 1181 349 25 0 0 chr5 78190410 78190450 -74346809 - L1_Mus1 LINE L1 -339 6227 6188 2 1181 2627 75 0 3 chr5 78190450 78190796 -74346463 + L1_Mus1 LINE L1 6223 6567 0 2 1181 306 302 132 16 chr5 78191135 78191256 -74346003 + L2a LINE L2 3241 3399 -27 2 1181 237 304 38 0 chr5 78192659 78192738 -74344521 - MIRc SINE MIR -8 260 179 2 1181 1226 48 18 0 chr5 78193255 78193420 -74343839 + B2_Mm2 SINE B2 20 187 -8 2 1181 21 0 0 0 chr5 78193422 78193443 -74343816 + AT_rich Low_complexity Low_complexity 1 21 0 2 1181 922 186 175 14 chr5 78193458 78193681 -74343578 - Lx5 LINE L1 0 7050 6792 2 1181 2399 111 12 58 chr5 78193683 78194083 -74343176 + Lx5 LINE L1 5712 6093 -957 2 1181 39693 24 1 0 chr5 78194098 78199412 -74337847 - L1Md_T LINE L1 -1 6581 1261 2 1181 2955 33 0 0 chr5 78199412 78199749 -74337510 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1181 24986 34 36 13 chr5 78199749 78202747 -74334512 + IAPEz-int LTR ERVK 8 3076 -3405 2 1181 7770 12 1 6 chr5 78202733 78203589 -74333670 + IAPEz-int LTR ERVK 5630 6481 0 2 1181 2966 30 0 0 chr5 78203589 78203926 -74333333 + IAPLTR1a_Mm LTR ERVK 1 337 0 2 1181 5646 44 1 57 chr5 78203926 78204695 -74332564 - L1Md_T LINE L1 -5458 1266 541 2 1181 342 183 0 0 chr5 78205243 78205314 -74331945 + GA-rich Low_complexity Low_complexity 3 73 0 2 1181 546 57 0 0 chr5 78207892 78207962 -74329297 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1181 202 189 38 0 chr5 78208081 78208134 -74329125 + (TTTAA)n Simple_repeat Simple_repeat 3 57 0 2 1181 419 300 58 23 chr5 78208306 78208480 -74328779 - MLT1J1 LTR MaLR -225 219 40 3 1181 569 271 20 7 chr5 78208922 78209074 -74328185 + ID_B1 SINE B4 60 213 -11 3 1181 1811 147 16 91 chr5 78209415 78209789 -74327470 + ORR1B1 LTR MaLR 41 386 -8 3 1181 276 276 142 19 chr5 78209866 78210029 -74327230 + MLT1B LTR MaLR 262 487 -18 3 1181 336 338 226 24 chr5 78210093 78210529 -74326730 + Tigger13a DNA MER2_type 30 553 -218 3 1181 500 156 9 0 chr5 78211105 78211214 -74326045 + CT-rich Low_complexity Low_complexity 1 110 0 3 1181 318 26 0 0 chr5 78211261 78211300 -74325959 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 3 1181 258 42 20 40 chr5 78213679 78213729 -74323530 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1181 499 268 15 42 chr5 78214570 78214845 -74322414 - HAL1-2a_MD LINE L1 -517 2507 2350 3 1181 346 290 126 26 chr5 78214898 78215182 -74322077 - MLT2B4 LTR ERVL -240 316 6 3 1181 308 280 136 0 chr5 78215417 78215535 -74321724 + MIRm SINE MIR 16 149 -127 3 1181 1814 118 37 62 chr5 78215803 78216128 -74321131 - ORR1A3 LTR MaLR -8 318 2 3 1181 405 0 0 0 chr5 78216129 78216174 -74321085 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1181 1594 259 91 27 chr5 78216211 78216742 -74320517 + Lx8 LINE L1 6886 7454 -19 3 1181 329 0 24 0 chr5 78216742 78216783 -74320476 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 1181 1594 259 91 27 chr5 78216783 78216798 -74320461 + Lx8 LINE L1 7455 7467 -6 3 1181 287 282 83 22 chr5 78220045 78220207 -74317052 - MIR SINE MIR -84 192 32 3 1181 306 0 0 0 chr5 78220662 78220696 -74316563 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 3 1181 219 36 0 0 chr5 78220792 78220820 -74316439 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1181 1702 230 130 87 chr5 78221828 78222414 -74314845 - RMER19C LTR ERVK 0 611 1 3 1181 25 0 0 0 chr5 78223499 78223524 -74313735 + AT_rich Low_complexity Low_complexity 1 25 0 3 1181 24 0 0 0 chr5 78224398 78224422 -74312837 + AT_rich Low_complexity Low_complexity 1 24 0 3 1181 587 165 49 8 chr5 78224425 78224547 -74312712 - B1F1 SINE Alu -18 131 5 3 1181 340 143 21 21 chr5 78225387 78225480 -74311779 + (TCTCTG)n Simple_repeat Simple_repeat 4 96 0 3 1181 399 21 0 0 chr5 78225491 78225539 -74311720 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1181 455 87 14 0 chr5 78226559 78226628 -74310631 + (TCC)n Simple_repeat Simple_repeat 3 72 0 3 1181 463 273 158 40 chr5 78227079 78227357 -74309902 + LTR81B LTR ERV1? 1039 1349 -44 3 1181 804 292 83 19 chr5 78228701 78229124 -74308135 - L1ME1 LINE L1 -1 6178 5729 3 1181 261 303 67 0 chr5 78229255 78229344 -74307915 - L1MC LINE L1 -2241 5544 5450 3 1181 261 294 147 49 chr5 78229420 78229645 -74307614 + L1M4 LINE L1 4784 5030 -1116 3 1181 228 227 23 128 chr5 78229838 78229924 -74307335 - B4A SINE B4 0 292 216 3 1181 599 0 14 0 chr5 78229943 78230014 -74307245 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 3 1181 989 281 44 0 chr5 78230081 78230351 -74306908 - B4A SINE B4 -9 283 2 3 1181 212 259 48 24 chr5 78232232 78232315 -74304944 - MIR3 SINE MIR -4 204 120 3 1181 601 229 22 1 chr5 78233987 78234130 -74303129 + B1F SINE Alu 11 199 -112 3 1181 483 18 0 0 chr5 78234604 78234660 -74302599 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1181 225 0 0 0 chr5 78234672 78234697 -74302562 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1181 342 0 0 0 chr5 78234700 78234738 -74302521 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1181 786 50 0 0 chr5 78235210 78235309 -74301950 + (TC)n Simple_repeat Simple_repeat 1 99 0 3 1181 508 339 67 8 chr5 78235655 78235893 -74301366 - MIRb SINE MIR -9 259 8 3 1181 369 0 0 0 chr5 78236340 78236381 -74300878 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1181 2138 88 53 21 chr5 78236507 78236577 -74300682 - L1_Mus4 LINE L1 -2 6634 6565 3 1181 383 0 0 21 chr5 78236577 78236625 -74300634 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 3 1181 2138 88 53 21 chr5 78236625 78236891 -74300368 - L1_Mus4 LINE L1 -72 6564 6287 3 1181 300 53 0 0 chr5 78237283 78237321 -74299938 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1181 496 288 52 65 chr5 78237352 78237642 -74299617 + Lx9 LINE L1 7357 7642 -2 3 1181 672 36 0 0 chr5 78237781 78237864 -74299395 + (GA)n Simple_repeat Simple_repeat 2 84 0 3 1181 259 301 117 56 chr5 78237957 78238154 -74299105 + MLT2B1 LTR ERVL 23 231 -289 3 1181 411 233 31 1 chr5 78238187 78238299 -74298960 + MLT2B1 LTR ERVL 397 517 -37 3 1181 594 297 156 7 chr5 78238336 78238631 -74298628 - L1MB1 LINE L1 -68 6121 5783 3 1181 414 0 0 0 chr5 78238759 78238805 -74298454 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1181 2285 139 121 7 chr5 78238824 78239238 -74298021 + RMER6B LTR ERVK 1 461 0 3 1181 474 18 0 0 chr5 78239248 78239303 -74297956 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1181 273 172 0 0 chr5 78239476 78239540 -74297719 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1181 241 321 0 0 chr5 78239542 78239598 -74297661 - ID SINE ID -144 80 25 3 1181 580 26 26 0 chr5 78240604 78240682 -74296577 + (CATA)n Simple_repeat Simple_repeat 3 82 0 3 1181 372 242 46 15 chr5 78241174 78241304 -74295955 + (TCTA)n Simple_repeat Simple_repeat 4 137 0 3 1181 724 184 59 0 chr5 78242080 78242216 -74295043 + B1_Mus2 SINE Alu 3 146 -1 3 1181 231 140 33 50 chr5 78242216 78242265 -74294994 + A-rich Low_complexity Low_complexity 11 60 0 3 1181 242 307 27 0 chr5 78242553 78242628 -74294631 + MLT1F LTR MaLR 386 462 -86 3 1181 343 325 76 73 chr5 78242636 78242978 -74294281 + MLT1A0 LTR MaLR 1 343 -22 3 1181 450 0 0 0 chr5 78243307 78243357 -74293902 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1181 770 315 87 26 chr5 78243694 78243725 -74293534 - MLT1A1 LTR MaLR -42 366 336 3 1181 180 0 0 0 chr5 78243725 78243745 -74293514 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3 1181 770 315 87 26 chr5 78243745 78244058 -74293201 - MLT1A1 LTR MaLR -73 335 2 3 1181 275 292 22 11 chr5 78244140 78244230 -74293029 - ORR1E LTR MaLR 0 359 269 3 1181 1134 210 174 15 chr5 78244461 78244795 -74292464 + MTC LTR MaLR 20 406 -15 3 1181 409 328 37 67 chr5 78246951 78247219 -74290040 + MLT1J1 LTR MaLR 38 297 -147 3 1181 405 0 0 0 chr5 78247661 78247706 -74289553 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1181 227 323 122 28 chr5 78248895 78249077 -74288182 - L2a LINE L2 0 3426 3185 3 1182 263 253 0 21 chr5 78251795 78251869 -74285390 + B1F2 SINE Alu 1 71 -78 3 1182 3169 151 86 17 chr5 78252240 78253147 -74284112 - RLTR25B LTR ERVK 0 1103 4 3 1182 194 91 0 29 chr5 78253795 78253829 -74283430 + (CTTA)n Simple_repeat Simple_repeat 3 35 0 3 1182 266 270 0 13 chr5 78253941 78254016 -74283243 + (CCAA)n Simple_repeat Simple_repeat 2 75 0 3 1182 24 32 0 0 chr5 78255092 78255123 -74282136 + AT_rich Low_complexity Low_complexity 1 31 0 3 1182 3770 167 75 45 chr5 78256064 78256973 -74280286 + RMER17B LTR ERVK 15 950 -8 3 1182 395 295 85 99 chr5 78257061 78257461 -74279798 + RLTR18B LTR ERVK 25 400 -216 3 1182 233 111 0 43 chr5 78257467 78257514 -74279745 + (CATA)n Simple_repeat Simple_repeat 2 46 0 3 1182 476 331 98 14 chr5 78257614 78257890 -74279369 + Lx9 LINE L1 7058 7356 -288 3 1182 24 32 0 0 chr5 78258098 78258129 -74279130 + AT_rich Low_complexity Low_complexity 1 31 0 3 1182 251 265 0 14 chr5 78258431 78258500 -74278759 - ID4_ SINE ID -14 69 2 3 1182 441 243 36 9 chr5 78258500 78258612 -74278647 - L1MA9 LINE L1 -361 5951 5837 3 1182 8077 145 61 16 chr5 78258613 78260206 -74277053 + ORR1A2-int LTR MaLR 300 1963 0 3 1182 2305 85 28 6 chr5 78260206 78260526 -74276733 + ORR1A2 LTR MaLR 1 327 0 3 1182 188 200 0 15 chr5 78260526 78260592 -74276667 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 1182 1628 196 75 39 chr5 78262649 78263037 -74274222 - MTC LTR MaLR -13 408 7 3 1182 217 0 61 0 chr5 78263492 78263525 -74273734 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 1182 1079 105 0 0 chr5 78263533 78263676 -74273583 - B1_Mus2 SINE Alu 0 147 5 3 1182 855 28 0 0 chr5 78263709 78263815 -74273444 + (CA)n Simple_repeat Simple_repeat 2 107 0 3 1182 820 311 4 18 chr5 78263818 78264044 -74273215 - ID_B1 SINE B4 0 224 2 3 1182 757 219 106 32 chr5 78264077 78264266 -74272993 + B3 SINE B2 1 203 -13 3 1182 360 148 0 0 chr5 78264280 78264341 -74272918 + (TATG)n Simple_repeat Simple_repeat 2 62 0 3 1182 2922 72 0 69 chr5 78265133 78265568 -74271691 - L1Md_F2 LINE L1 -17 6565 6161 3 1182 497 261 85 43 chr5 78265699 78265863 -74271396 + B3 SINE B2 19 189 -27 3 1182 194 405 21 21 chr5 78265922 78266111 -74271148 + L2a LINE L2 2876 3064 -355 3 1182 283 363 14 0 chr5 78266287 78266433 -74270826 + L2a LINE L2 3254 3401 -25 3 1182 642 95 0 0 chr5 78266434 78266529 -74270730 + (TA)n Simple_repeat Simple_repeat 2 96 0 3 1182 369 95 0 0 chr5 78268195 78268258 -74269001 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 3 1182 378 313 0 7 chr5 78268258 78268409 -74268850 + (TG)n Simple_repeat Simple_repeat 2 151 0 3 1182 234 0 0 0 chr5 78268834 78268860 -74268399 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 3 1182 1194 107 0 0 chr5 78268862 78269039 -74268220 + (TCCC)n Simple_repeat Simple_repeat 2 178 0 3 1182 273 371 31 0 chr5 78269083 78269180 -74268079 - PB1D9 SINE Alu -19 101 2 3 1182 290 342 49 43 chr5 78269231 78269393 -74267866 - MLT1L LTR MaLR -87 523 361 3 1182 1309 185 49 68 chr5 78269577 78269902 -74267357 + RMER1C Other Other 998 1316 -26 3 1182 468 91 0 0 chr5 78269902 78269968 -74267291 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 1182 261 0 0 0 chr5 78270775 78270804 -74266455 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1182 299 237 46 168 chr5 78270868 78271029 -74266230 + MTEa LTR MaLR 222 367 -12 4 1182 4910 61 0 0 chr5 78271141 78271883 -74265376 - L1Md_F2 LINE L1 -394 6188 5447 4 1182 3093 89 0 27 chr5 78271883 78272324 -74264935 + L1Md_F2 LINE L1 6153 6581 -1 4 1182 38669 42 0 3 chr5 78272385 78278619 -74258640 - L1Md_T LINE L1 0 6585 271 4 1182 410 304 46 46 chr5 78280684 78280775 -74256484 + B3 SINE B2 4 94 -122 4 1182 441 0 0 0 chr5 78280775 78280824 -74256435 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1182 410 304 46 46 chr5 78280824 78280884 -74256375 + B3 SINE B2 95 154 -62 4 1182 249 210 65 0 chr5 78284943 78285005 -74252254 + MIR SINE MIR 85 150 -112 4 1182 449 314 7 67 chr5 78285286 78285436 -74251823 + ORR1E LTR MaLR 1 141 -218 4 1182 325 306 16 31 chr5 78286712 78286840 -74250419 + Lx8 LINE L1 6951 7076 -397 4 1182 287 309 64 0 chr5 78287245 78287355 -74249904 + ERVL-E-int LTR ERVL 3157 3273 -2394 4 1182 744 347 59 25 chr5 78288742 78289100 -74248159 + MLT1A1 LTR MaLR 26 395 -13 4 1182 901 242 5 31 chr5 78289240 78289462 -74247797 + B3 SINE B2 1 216 0 4 1182 240 35 0 0 chr5 78289465 78289494 -74247765 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1182 421 364 75 25 chr5 78289675 78289957 -74247302 + MLT1I LTR MaLR 115 410 -1 4 1182 311 266 36 18 chr5 78291057 78291168 -74246091 + MLT1I LTR MaLR 440 552 -10 4 1182 270 81 0 0 chr5 78291208 78291245 -74246014 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 4 1182 736 151 0 11 chr5 78291917 78292098 -74245161 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1182 7887 38 6 1 chr5 78292702 78293660 -74243599 + L1Md_F2 LINE L1 5620 6582 0 4 1182 411 68 0 0 chr5 78293748 78293807 -74243452 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1182 293 295 12 25 chr5 78293848 78293928 -74243331 - B4 SINE B4 -213 79 1 4 1182 194 388 77 57 chr5 78294107 78294301 -74242958 - MIRb SINE MIR -69 199 2 4 1182 248 363 33 11 chr5 78296063 78296155 -74241104 - B4 SINE B4 -129 163 70 4 1182 22 0 0 0 chr5 78296219 78296241 -74241018 + AT_rich Low_complexity Low_complexity 1 22 0 4 1182 22 0 0 0 chr5 78296281 78296303 -74240956 + AT_rich Low_complexity Low_complexity 1 22 0 4 1182 286 365 43 0 chr5 78297432 78297547 -74239712 + PB1D7 SINE Alu 1 120 0 4 1182 1107 188 94 0 chr5 78297858 78298114 -74239145 + Lx9 LINE L1 7213 7492 -152 4 1182 242 253 58 0 chr5 78298132 78298219 -74239040 + Lx9 LINE L1 7546 7637 -7 4 1182 1205 252 105 27 chr5 78298242 78298727 -74238532 - Lx8 LINE L1 0 7473 6951 4 1182 717 294 100 28 chr5 78298885 78299518 -74237741 + L1_Mur3 LINE L1 2546 3221 -2659 4 1182 21 0 0 0 chr5 78300418 78300439 -74236820 + AT_rich Low_complexity Low_complexity 1 21 0 4 1182 21 0 0 0 chr5 78300958 78300979 -74236280 + AT_rich Low_complexity Low_complexity 1 21 0 4 1182 189 228 121 48 chr5 78302119 78302202 -74235057 - L3 LINE CR1 -901 3588 3500 4 1182 1257 246 65 3 chr5 78302755 78303048 -74234211 - MTEa LTR MaLR -9 370 60 4 1182 346 296 54 9 chr5 78303335 78303557 -74233702 + L1M3e LINE L1 1867 2098 -4932 4 1182 251 202 81 23 chr5 78304373 78304459 -74232800 + L1M3 LINE L1 4736 4826 -1314 4 1182 942 280 87 6 chr5 78305030 78305516 -74231743 - L1_Mur3 LINE L1 -646 5657 5137 4 1182 360 273 50 38 chr5 78305539 78305699 -74231560 + L1M3 LINE L1 4866 5027 -1113 4 1182 403 309 75 13 chr5 78305941 78306167 -74231092 + L1M3 LINE L1 5357 5596 -716 4 1182 696 210 0 0 chr5 78306167 78306324 -74230935 + GA-rich Low_complexity Low_complexity 1 157 0 4 1182 413 290 19 0 chr5 78306331 78306486 -74230773 + L1M3 LINE L1 5608 5765 -547 4 1182 349 81 32 0 chr5 78307721 78307783 -74229476 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 4 1182 233 350 126 21 chr5 78307783 78307926 -74229333 + MER58A DNA MER1_type 66 223 -1 4 1182 213 163 23 23 chr5 78307983 78308027 -74229232 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1182 458 288 24 100 chr5 78308076 78308327 -74228932 - B4A SINE B4 -47 245 14 4 1182 23 54 0 0 chr5 78308346 78308383 -74228876 + AT_rich Low_complexity Low_complexity 1 37 0 4 1182 244 222 0 36 chr5 78309394 78309450 -74227809 + CT-rich Low_complexity Low_complexity 2 55 0 4 1182 1009 210 4 17 chr5 78309530 78309763 -74227496 + RMER17C LTR ERVK 181 410 0 4 1182 300 99 28 14 chr5 78309832 78309904 -74227355 + (CAAAAA)n Simple_repeat Simple_repeat 1 73 0 4 1182 369 0 0 0 chr5 78310266 78310307 -74226952 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1182 256 220 0 0 chr5 78311681 78311740 -74225519 - Lx3B LINE L1 -6 6967 6909 4 1182 226 338 50 0 chr5 78311780 78311882 -74225377 + MIRm SINE MIR 54 164 -112 4 1182 369 0 0 0 chr5 78312052 78312093 -74225166 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 1182 348 127 0 0 chr5 78312139 78312194 -74225065 + (CAT)n Simple_repeat Simple_repeat 2 56 0 4 1182 1871 183 88 8 chr5 78313629 78314014 -74223245 - MTC LTR MaLR -5 416 1 4 1182 731 316 57 65 chr5 78314014 78314378 -74222881 - MLT2B1 LTR ERVL -34 520 64 4 1182 597 83 0 0 chr5 78314378 78314462 -74222797 + (TA)n Simple_repeat Simple_repeat 2 85 0 4 1182 731 312 47 79 chr5 78314462 78314491 -74222768 - MLT2B1 LTR ERVL -457 63 32 4 1182 225 0 0 0 chr5 78315506 78315531 -74221728 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1182 255 306 0 31 chr5 78315538 78315602 -74221657 - B3A SINE B2 -22 176 115 4 1182 393 304 39 45 chr5 78315558 78315713 -74221546 - B4A SINE B4 -8 284 131 4 1182 357 24 0 0 chr5 78316675 78316717 -74220542 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1182 180 0 0 0 chr5 78317990 78318010 -74219249 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 4 1182 315 0 0 0 chr5 78318189 78318224 -74219035 + (TTA)n Simple_repeat Simple_repeat 1 35 0 4 1182 284 280 53 11 chr5 78318704 78318798 -74218461 + B1F SINE Alu 44 141 -8 4 1182 420 213 0 0 chr5 78318883 78319005 -74218254 + (CA)n Simple_repeat Simple_repeat 2 123 0 4 1182 183 80 0 0 chr5 78319057 78319082 -74218177 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1182 189 0 0 0 chr5 78319484 78319505 -74217754 + (TTA)n Simple_repeat Simple_repeat 2 22 0 4 1182 264 153 32 63 chr5 78321997 78322060 -74215199 + 4.5SRNA scRNA scRNA 26 86 -8 4 1182 807 81 18 0 chr5 78322004 78322115 -74215144 + B1_Mus1 SINE Alu 35 147 -1 4 1182 662 252 0 0 chr5 78322125 78322264 -74214995 - B1_Mur3 SINE Alu -9 140 2 4 1182 642 308 107 49 chr5 78322471 78322799 -74214460 - ORR1E LTR MaLR -6 353 7 4 1182 388 339 8 8 chr5 78322852 78322974 -74214285 + MIR SINE MIR 20 141 -121 4 1182 427 259 70 89 chr5 78323013 78323170 -74214089 - MER20 DNA MER1_type -1 218 65 4 1182 3865 58 0 0 chr5 78323395 78323912 -74213347 + L1_Mm LINE L1 4281 4797 -1086 4 1182 243 183 134 0 chr5 78324706 78324788 -74212471 + L1MA8 LINE L1 6013 6105 -186 4 1182 940 193 57 0 chr5 78325110 78325322 -74211937 - Lx LINE L1 0 6654 6431 4 1182 503 337 91 0 chr5 78325820 78326007 -74211252 + MER20 DNA MER1_type 1 204 -15 4 1182 238 86 0 0 chr5 78326608 78326643 -74210616 - RMER19C LTR ERVK 0 611 577 4 1182 759 105 81 0 chr5 78326638 78326762 -74210497 - BC1_Mm scRNA scRNA -16 136 3 4 1182 1827 234 38 159 chr5 78326772 78327438 -74209821 - RMER19C LTR ERVK -19 592 8 4 1182 261 0 0 0 chr5 78328389 78328418 -74208841 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1182 495 343 95 72 chr5 78328643 78328989 -74208270 - ORR1E LTR MaLR -5 354 1 4 1182 313 301 0 35 chr5 78329131 78329217 -74208042 - PB1D10 SINE Alu -34 83 1 4 1182 285 321 0 13 chr5 78329156 78329235 -74208024 - ID_B1 SINE B4 -82 142 65 4 1182 888 283 21 62 chr5 78329244 78329474 -74207785 + B4A SINE B4 1 222 -70 4 1182 1406 82 16 0 chr5 78329474 78329658 -74207601 + B2_Mm2 SINE B2 2 188 -7 4 1182 888 283 21 62 chr5 78329658 78329717 -74207542 + B4A SINE B4 223 278 -14 4 1182 532 323 86 36 chr5 78331042 78331623 -74205636 - HAL1 LINE L1 -665 1842 1233 4 1182 445 344 45 30 chr5 78331801 78332065 -74205194 - MLT1H-int LTR MaLR -557 852 585 4 1182 940 295 31 79 chr5 78332091 78332439 -74204820 + MTEa LTR MaLR 4 324 -55 4 1182 234 167 24 0 chr5 78332439 78332481 -74204778 + CT-rich Low_complexity Low_complexity 4 46 0 4 1182 1615 218 94 5 chr5 78333156 78333539 -74203720 - MTD LTR MaLR 0 419 3 4 1182 487 246 58 34 chr5 78334126 78334274 -74202985 - ORR1D2 LTR MaLR 0 379 228 4 1182 839 174 220 0 chr5 78334295 78334427 -74202832 - Lx9 LINE L1 -7 7637 7503 4 1182 267 31 0 0 chr5 78334427 78334459 -74202800 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1182 839 174 220 0 chr5 78334459 78334567 -74202692 - Lx9 LINE L1 -142 7502 7345 4 1182 195 69 0 0 chr5 78334585 78334614 -74202645 + (TTG)n Simple_repeat Simple_repeat 1 29 0 4 1182 305 96 0 0 chr5 78334672 78334724 -74202535 - ORR1D2 LTR MaLR -243 131 80 4 1182 891 136 74 0 chr5 78335849 78336025 -74201234 + Lx2 LINE L1 6808 6996 -1 4 1182 6336 110 38 14 chr5 78336278 78337470 -74199789 + Lx LINE L1 5427 6645 -9 4 1182 258 81 0 0 chr5 78337495 78337532 -74199727 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 4 1182 248 79 45 45 chr5 78339352 78339418 -74197841 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 4 1182 1074 54 0 0 chr5 78339532 78339662 -74197597 - B1_Mus1 SINE Alu -18 130 1 4 1182 1264 91 26 16 chr5 78339662 78339851 -74197408 - B2_Mm2 SINE B2 -3 192 1 4 1182 396 268 128 43 chr5 78339856 78340090 -74197169 - L1_Rod LINE L1 -73 5774 5521 4 1182 400 275 92 0 chr5 78340539 78340648 -74196611 - PB1 SINE Alu -2 125 7 4 1182 1401 72 10 10 chr5 78341705 78341900 -74195359 + B2_Mm2 SINE B2 1 195 0 4 1182 234 333 0 0 chr5 78342589 78342655 -74194604 + MIRc SINE MIR 32 97 -171 4 1182 361 332 70 0 chr5 78343096 78343295 -74193964 - L2 LINE L2 -437 2982 2770 4 1182 953 150 171 0 chr5 78343522 78343715 -74193544 - URR1A DNA MER1_type 0 226 1 4 1182 555 306 7 7 chr5 78343740 78343878 -74193381 + MLT1C LTR MaLR 330 467 0 4 1182 513 0 0 0 chr5 78344571 78344628 -74192631 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1182 417 256 0 0 chr5 78345015 78345140 -74192119 + (TA)n Simple_repeat Simple_repeat 2 126 0 5 1182 2716 86 3 3 chr5 78348932 78349317 -74187942 + Lx3_Mus LINE L1 6188 6572 -437 5 1182 527 320 107 36 chr5 78349494 78349802 -74187457 - MLT1A0 LTR MaLR -6 359 30 5 1182 548 365 37 5 chr5 78350423 78350638 -74186621 + MLT1J1 LTR MaLR 52 273 -171 5 1182 189 107 0 0 chr5 78350709 78350737 -74186522 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 5 1182 421 136 48 0 chr5 78352907 78353010 -74184249 + (TA)n Simple_repeat Simple_repeat 1 108 0 5 1182 728 325 26 40 chr5 78353101 78353337 -74183922 - B4 SINE B4 0 292 82 5 1182 860 293 88 0 chr5 78353466 78353794 -74183465 - Lx8 LINE L1 -345 7128 6772 5 1182 541 61 24 0 chr5 78353932 78354014 -74183245 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 5 1182 1918 221 108 23 chr5 78354014 78354542 -74182717 - Lx9 LINE L1 -170 7474 6902 5 1182 370 256 13 0 chr5 78354569 78354647 -74182612 - B4 SINE B4 -213 79 1 5 1182 525 232 9 26 chr5 78354732 78354847 -74182412 - PB1D9 SINE Alu -7 113 1 5 1182 324 276 0 0 chr5 78355083 78355159 -74182100 + ID2 SINE ID 2 77 -6 5 1182 539 353 21 11 chr5 78355193 78355474 -74181785 + Lx8 LINE L1 6685 6968 -505 5 1182 318 219 33 58 chr5 78355488 78355609 -74181650 + Lx8 LINE L1 7356 7473 0 5 1182 21 57 0 0 chr5 78355615 78355650 -74181609 + AT_rich Low_complexity Low_complexity 1 35 0 5 1182 904 263 105 0 chr5 78356363 78356648 -74180611 + Lx6 LINE L1 7000 7314 -146 5 1182 1121 84 0 0 chr5 78356662 78356804 -74180455 - B1_Mus1 SINE Alu -6 142 1 5 1182 642 310 25 0 chr5 78357450 78357608 -74179651 + B3A SINE B2 8 169 -29 5 1182 194 81 27 0 chr5 78357610 78357647 -74179612 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 5 1182 513 0 0 0 chr5 78357647 78357704 -74179555 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1182 189 0 0 0 chr5 78357704 78357724 -74179535 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1182 640 295 26 10 chr5 78357751 78357943 -74179316 + B3A SINE B2 4 198 0 5 1182 833 171 6 0 chr5 78359956 78360126 -74177133 + GA-rich Low_complexity Low_complexity 2 172 0 5 1182 443 309 130 13 chr5 78360411 78360697 -74176562 - MER58B DNA MER1_type -6 335 10 5 1182 249 225 84 0 chr5 78361528 78361599 -74175660 - ORR1E LTR MaLR -12 347 271 5 1182 332 22 22 0 chr5 78361774 78361819 -74175440 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 5 1182 235 323 40 40 chr5 78362320 78362420 -74174839 - ORR1E LTR MaLR -267 112 13 5 1182 502 339 5 31 chr5 78364420 78364612 -74172647 - MLT1A LTR MaLR -15 359 173 5 1182 205 154 19 37 chr5 78364615 78364669 -74172590 + GA-rich Low_complexity Low_complexity 1 53 0 5 1182 10313 111 8 4 chr5 78365169 78367048 -74170211 - L1_Mus4 LINE L1 -7 6629 4738 5 1182 263 0 62 21 chr5 78367048 78367096 -74170163 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 5 1182 10313 139 10 6 chr5 78367096 78367731 -74169528 - L1_Mus4 LINE L1 -1146 4737 4108 5 1182 497 194 0 0 chr5 78367731 78367824 -74169435 - 4.5SRNA scRNA scRNA -1 93 1 5 1182 447 35 0 0 chr5 78368104 78368161 -74169098 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1182 419 333 32 0 chr5 78368190 78368313 -74168946 - RSINE1 SINE B4 -38 127 1 5 1182 218 340 31 31 chr5 78369902 78369999 -74167260 - MIRb SINE MIR -77 191 95 5 1182 430 200 29 154 chr5 78370321 78370418 -74166841 + B3 SINE B2 92 177 -39 5 1182 3192 65 2 0 chr5 78370418 78370817 -74166442 - MTB LTR MaLR 0 400 1 5 1182 430 200 29 154 chr5 78370817 78370855 -74166404 + B3 SINE B2 178 210 -6 5 1182 345 253 26 37 chr5 78371730 78371831 -74165428 + PB1D9 SINE Alu 5 106 -43 5 1182 423 0 0 0 chr5 78371831 78371878 -74165381 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1182 297 277 58 74 chr5 78371878 78371897 -74165362 + B1F SINE Alu 107 123 -26 5 1182 2133 155 65 3 chr5 78371900 78372256 -74165003 + ORR1B1 LTR MaLR 17 394 0 5 1182 22 0 0 0 chr5 78372360 78372382 -74164877 + AT_rich Low_complexity Low_complexity 1 22 0 5 1182 424 60 90 0 chr5 78372385 78372452 -74164807 + ORR1B1 LTR MaLR 322 394 0 5 1182 2805 214 93 20 chr5 78372452 78373213 -74164046 + ORR1B1-int LTR MaLR 1 817 -692 5 1182 872 279 68 3 chr5 78373222 78373546 -74163713 + Lx8 LINE L1 6827 7171 -302 5 1182 784 273 11 0 chr5 78374485 78374668 -74162591 - B3 SINE B2 -9 207 23 5 1182 468 299 42 21 chr5 78375236 78375427 -74161832 + MIR SINE MIR 68 262 0 5 1182 194 216 54 0 chr5 78375794 78375831 -74161428 + L2b LINE L2 3234 3272 -103 5 1182 197 306 113 0 chr5 78376141 78376203 -74161056 + MIRc SINE MIR 93 161 -107 5 1182 258 290 54 36 chr5 78376573 78376684 -74160575 + MLT1A1 LTR MaLR 29 141 -267 5 1182 630 26 0 0 chr5 78376926 78377002 -74160257 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 1182 218 416 0 74 chr5 78377262 78377397 -74159862 - PB1 SINE Alu -2 125 1 5 1182 256 292 10 101 chr5 78378680 78378779 -74158480 + MLT1A1 LTR MaLR 238 327 -222 5 1182 184 242 143 16 chr5 78379590 78379653 -74157606 - L4 LINE RTE -587 1442 1372 5 1182 570 317 10 60 chr5 78379851 78380114 -74157145 + MTE2a LTR MaLR 6 223 -156 5 1182 333 0 0 0 chr5 78380114 78380151 -74157108 + (TC)n Simple_repeat Simple_repeat 1 37 0 5 1182 841 126 44 0 chr5 78380151 78380286 -74156973 - B1_Mus1 SINE Alu 0 148 8 5 1182 597 211 128 26 chr5 78380277 78380433 -74156826 + MTE2a LTR MaLR 208 379 0 5 1182 191 381 120 9 chr5 78380673 78380890 -74156369 - L2 LINE L2 -393 3026 2786 5 1183 629 272 168 54 chr5 78381152 78381467 -74155792 - ORR1E LTR MaLR -3 356 6 5 1183 670 65 0 0 chr5 78381491 78381584 -74155675 - L1_Mm LINE L1 -386 5497 5405 5 1183 768 117 108 117 chr5 78381581 78381803 -74155456 + Lx LINE L1 6432 6651 -3 5 1183 266 339 36 0 chr5 78382283 78382395 -74154864 - L2c LINE L2 -41 3346 3231 5 1183 315 71 0 0 chr5 78382904 78382946 -74154313 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1183 281 125 0 18 chr5 78384397 78384454 -74152805 + (CAAAC)n Simple_repeat Simple_repeat 2 57 0 5 1183 438 269 77 66 chr5 78385043 78385330 -74151929 - L1MA4A LINE L1 -280 6020 5731 5 1183 265 252 0 106 chr5 78386300 78386460 -74150799 + G-rich Low_complexity Low_complexity 3 145 0 5 1183 972 88 0 0 chr5 78386696 78386832 -74150427 + (TTTC)n Simple_repeat Simple_repeat 3 138 0 5 1183 1331 201 73 54 chr5 78386832 78387123 -74150136 - Lx5 LINE L1 -14 7036 6727 5 1183 378 0 0 0 chr5 78387123 78387165 -74150094 + (TA)n Simple_repeat Simple_repeat 1 42 0 5 1183 293 0 27 0 chr5 78387165 78387201 -74150058 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 1183 1331 201 73 54 chr5 78387201 78387277 -74149982 - Lx5 LINE L1 -324 6726 6662 5 1183 3702 160 67 6 chr5 78387274 78387958 -74149301 + Lx5 LINE L1 5903 6628 -422 5 1183 2814 114 28 16 chr5 78388033 78388357 -74148902 + Lx LINE L1 6211 6542 -112 5 1183 2865 86 8 5 chr5 78388357 78388756 -74148503 + MTB LTR MaLR 1 400 0 5 1183 2814 114 28 16 chr5 78388756 78388868 -74148391 + Lx LINE L1 6543 6652 -2 5 1183 275 259 0 12 chr5 78389214 78389296 -74147963 - Lx9 LINE L1 -173 7471 7391 5 1183 34001 73 2 13 chr5 78389415 78395717 -74141542 - L1Md_F2 LINE L1 -12 6570 346 5 1183 317 269 86 0 chr5 78395743 78395836 -74141423 - PB1D7 SINE Alu -2 118 18 5 1183 279 373 42 7 chr5 78396118 78396261 -74140998 + MLT1G LTR MaLR 405 552 -39 5 1183 246 234 33 123 chr5 78396633 78396755 -74140504 + Tigger12 DNA MER2_type 1749 1859 -100 5 1183 227 232 0 51 chr5 78396782 78396841 -74140418 + Lx9 LINE L1 7240 7295 -349 5 1183 24 53 0 0 chr5 78397083 78397121 -74140138 + AT_rich Low_complexity Low_complexity 1 38 0 5 1183 230 223 262 0 chr5 78397195 78397298 -74139961 + B3 SINE B2 2 131 -85 5 1183 34953 35 2 7 chr5 78397298 78402594 -74134665 + L1Md_T LINE L1 322 5586 -297 5 1183 8349 34 2 0 chr5 78402595 78403587 -74133672 + L1Md_T LINE L1 5588 6581 -1 5 1183 612 238 7 33 chr5 78403587 78403739 -74133520 + B2_Mm2 SINE B2 29 176 -19 5 1183 986 179 6 6 chr5 78403896 78404076 -74133183 - URR1B DNA MER1_type 0 225 46 5 1183 450 0 0 0 chr5 78405457 78405507 -74131752 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 5 1183 268 362 0 0 chr5 78406161 78406230 -74131029 + RSINE1 SINE B4 12 80 -85 5 1183 330 138 0 0 chr5 78406291 78406349 -74130910 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1183 827 37 9 0 chr5 78406837 78406944 -74130315 + (TTCC)n Simple_repeat Simple_repeat 2 109 0 5 1183 1974 252 41 17 chr5 78407193 78407782 -74129477 - Lx7 LINE L1 -290 7406 6804 5 1183 187 341 76 11 chr5 78409749 78409841 -74127418 + MIRm SINE MIR 158 255 -21 5 1183 331 274 0 0 chr5 78409974 78410047 -74127212 + ID4_ SINE ID 3 75 -8 5 1183 1745 240 74 7 chr5 78410401 78410845 -74126414 - Lx6 LINE L1 -4 7456 6983 5 1183 420 20 0 0 chr5 78411669 78411718 -74125541 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1183 609 218 3 0 chr5 78411964 78412318 -74124941 + (CA)n Simple_repeat Simple_repeat 1 355 0 5 1183 789 41 0 0 chr5 78412378 78412475 -74124784 + (TTTC)n Simple_repeat Simple_repeat 3 99 0 5 1183 827 114 7 26 chr5 78412475 78412628 -74124631 - Lx LINE L1 -15 6639 6490 5 1183 3433 72 0 2 chr5 78412679 78413122 -74124137 - L1_Mus2 LINE L1 0 6566 6125 5 1183 272 276 0 11 chr5 78413138 78413226 -74124033 - L1_Mur3 LINE L1 -471 5409 5323 5 1183 792 167 0 0 chr5 78413227 78413371 -74123888 + CT-rich Low_complexity Low_complexity 3 146 0 5 1183 1187 312 56 32 chr5 78413372 78413941 -74123318 - L1M2 LINE L1 -788 5355 4773 5 1183 495 0 0 0 chr5 78413941 78413996 -74123263 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1183 252 0 0 0 chr5 78413996 78414023 -74123236 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1183 1187 312 56 32 chr5 78414023 78414294 -74122965 - L1M2 LINE L1 -1371 4772 4495 5 1183 270 0 0 0 chr5 78415247 78415277 -74121982 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1183 379 197 14 0 chr5 78415301 78415372 -74121887 - RMER5 LTR ERV1 -15 519 448 5 1183 21 0 0 0 chr5 78417047 78417068 -74120191 + AT_rich Low_complexity Low_complexity 1 21 0 5 1183 335 315 72 0 chr5 78417080 78417191 -74120068 + PB1 SINE Alu 9 127 0 6 1183 257 89 22 0 chr5 78417656 78417701 -74119558 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1183 34900 51 10 3 chr5 78417805 78424400 -74112859 - L1Md_T LINE L1 0 6585 1 6 1183 284 42 58 77 chr5 78424398 78424450 -74112809 - Lx3C LINE L1 -1047 5929 5879 6 1183 3050 59 2 9 chr5 78424447 78424873 -74112386 + L1_Mur1 LINE L1 4776 5198 -688 6 1183 472 350 34 39 chr5 78424874 78425079 -74112180 - B4A SINE B4 -88 204 1 6 1183 21 0 0 0 chr5 78425098 78425119 -74112140 + AT_rich Low_complexity Low_complexity 1 21 0 6 1183 387 0 0 0 chr5 78425379 78425422 -74111837 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1183 270 56 0 0 chr5 78425422 78425457 -74111802 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1183 231 157 0 0 chr5 78425457 78425508 -74111751 + GA-rich Low_complexity Low_complexity 1 51 0 6 1183 936 246 57 0 chr5 78425521 78425785 -74111474 + Lx9 LINE L1 7062 7340 -304 6 1183 1178 43 0 0 chr5 78425821 78425959 -74111300 - B1_Mus2 SINE Alu -9 138 1 6 1183 328 254 167 0 chr5 78425977 78426091 -74111168 - MTE2a LTR MaLR -242 137 5 6 1183 36565 34 11 7 chr5 78426369 78432679 -74104580 - L1Md_T LINE L1 0 6582 244 6 1183 625 288 92 67 chr5 78432780 78433063 -74104196 - B4A SINE B4 0 292 3 6 1183 393 22 0 0 chr5 78434664 78434710 -74102549 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1183 4509 267 67 28 chr5 78434726 78436350 -74100909 - Lx7 LINE L1 -292 7404 5717 6 1183 923 116 0 26 chr5 78436806 78436948 -74100311 + B1_Mus1 SINE Alu 2 139 -9 6 1183 376 19 38 0 chr5 78436948 78437001 -74100258 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 6 1183 477 0 0 0 chr5 78437058 78437111 -74100148 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1183 1406 305 13 21 chr5 78437692 78438077 -74099182 + RCHARR1 DNA MER1_type 1 382 -592 6 1183 440 111 14 0 chr5 78438077 78438149 -74099110 + (TCTA)n Simple_repeat Simple_repeat 3 75 0 6 1183 1147 246 48 50 chr5 78438731 78439107 -74098152 + MTE2b LTR MaLR 1 375 -4 6 1183 1131 50 0 34 chr5 78439125 78439271 -74097988 + B1_Mm SINE Alu 2 142 -5 6 1183 234 0 0 0 chr5 78440317 78440343 -74096916 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1183 282 322 51 137 chr5 78440713 78440947 -74096312 + MTEb LTR MaLR 1 214 -165 6 1183 2025 184 39 17 chr5 78441693 78442103 -74095156 - MTC LTR MaLR -2 419 1 6 1183 902 109 20 0 chr5 78442848 78442995 -74094264 - Lx2 LINE L1 -73 6924 6775 6 1183 783 105 0 0 chr5 78442994 78443108 -74094151 - Lx2 LINE L1 -353 6644 6531 6 1183 524 116 12 0 chr5 78443528 78443614 -74093645 + (TA)n Simple_repeat Simple_repeat 2 88 0 6 1183 186 43 0 0 chr5 78444053 78444076 -74093183 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1183 1725 207 138 28 chr5 78445475 78445932 -74091327 - RLTR11A2 LTR ERVK -2 525 19 6 1183 456 262 198 44 chr5 78446014 78446262 -74090997 - B4 SINE B4 -5 287 2 6 1183 917 327 19 0 chr5 78446643 78447010 -74090249 + L1MD3 LINE L1 7615 7988 -7 6 1183 367 237 87 63 chr5 78447232 78447358 -74089901 + MIRb SINE MIR 78 206 -62 6 1183 182 37 37 0 chr5 78447538 78447565 -74089694 + (CAT)n Simple_repeat Simple_repeat 1 28 0 6 1183 1288 155 23 9 chr5 78447691 78447912 -74089347 - URR1B DNA MER1_type -1 224 1 6 1183 26 30 0 0 chr5 78448707 78448740 -74088519 + AT_rich Low_complexity Low_complexity 1 33 0 6 1183 384 285 59 64 chr5 78449338 78449574 -74087685 - Lx9 LINE L1 -25 7619 7385 6 1183 429 20 0 0 chr5 78449912 78449962 -74087297 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 6 1183 181 323 38 94 chr5 78450383 78450489 -74086770 - MIRm SINE MIR -161 115 16 6 1183 510 331 101 26 chr5 78451006 78451273 -74085986 + MLT1C LTR MaLR 179 465 -2 6 1183 1273 247 93 22 chr5 78451486 78451850 -74085409 - RMER15 LTR ERVL -2 573 184 6 1183 1155 269 118 7 chr5 78451885 78452205 -74085054 + ORR1D2 LTR MaLR 21 377 -2 6 1183 548 178 20 10 chr5 78452205 78452304 -74084955 - RMER15 LTR ERVL -449 126 27 6 1183 374 152 17 0 chr5 78452360 78452419 -74084840 - RMER15 LTR ERVL -515 60 1 6 1183 225 0 0 0 chr5 78452462 78452487 -74084772 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1183 23 0 0 0 chr5 78452659 78452682 -74084577 + AT_rich Low_complexity Low_complexity 1 23 0 6 1183 1025 93 0 7 chr5 78453608 78453760 -74083499 + (GGGAGA)n Simple_repeat Simple_repeat 1 151 0 6 1183 367 274 26 17 chr5 78454884 78454999 -74082260 - Tigger5 DNA MER2_type 0 2406 2291 6 1183 250 377 115 23 chr5 78454995 78455212 -74082047 - Tigger5 DNA MER2_type -2164 242 6 6 1183 315 167 0 0 chr5 78455900 78455966 -74081293 + A-rich Low_complexity Low_complexity 1 66 0 6 1183 21 57 0 0 chr5 78456752 78456787 -74080472 + AT_rich Low_complexity Low_complexity 1 35 0 6 1183 530 122 53 8 chr5 78456795 78456894 -74080365 + ORR1A3 LTR MaLR 242 369 -1 6 1183 5900 174 106 16 chr5 78456894 78457493 -74079766 - L1_Mur3 LINE L1 -3090 2790 2090 6 1183 360 0 0 0 chr5 78457493 78457533 -74079726 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1183 5900 174 106 16 chr5 78457533 78458248 -74079011 - L1_Mur3 LINE L1 -3791 2089 1358 6 1183 993 297 68 8 chr5 78458247 78458630 -74078629 - L1_Mur3 LINE L1 -6931 797 392 6 1183 1940 168 14 26 chr5 78459552 78459967 -74077292 + RMER17C LTR ERVK 1 410 0 6 1183 378 258 16 98 chr5 78460970 78461055 -74076204 - PB1D10 SINE Alu 0 147 6 6 1183 280 329 0 12 chr5 78461055 78461135 -74076124 - ID_B1 SINE B4 -59 165 87 6 1183 333 347 143 39 chr5 78463520 78463904 -74073355 - MLT1K LTR MaLR -3 592 169 6 1183 14574 139 21 17 chr5 78464615 78467131 -74070128 - L1_Mus3 LINE L1 -13 6625 4065 6 1183 386 41 0 0 chr5 78467131 78467180 -74070079 + B2_Mm2 SINE B2 3 51 -144 6 1183 14574 139 21 17 chr5 78467180 78467969 -74069290 - L1_Mus3 LINE L1 -13 4064 3260 6 1183 33795 70 11 6 chr5 78467965 78473004 -74064255 - L1Md_F2 LINE L1 0 6582 1511 6 1183 1972 82 7 7 chr5 78473004 78473287 -74063972 - L1Md_A LINE L1 -2 6580 6298 6 1183 33795 142 9 22 chr5 78473287 78474380 -74062879 - L1Md_F2 LINE L1 -4373 1510 438 6 1183 6718 103 21 23 chr5 78474376 78475326 -74061933 - MusHAL1 LINE L1 -642 2070 1107 6 1183 2776 79 0 3 chr5 78475326 78475696 -74061563 + L1_Mus1 LINE L1 6198 6566 -1 6 1183 6718 103 21 23 chr5 78475696 78475821 -74061438 - MusHAL1 LINE L1 -1606 1106 997 6 1183 4326 161 7 7 chr5 78475814 78476554 -74060705 - L1VL4 LINE L1 -5527 775 36 6 1183 5886 118 17 8 chr5 78476542 78477429 -74059830 - Lx3B LINE L1 -133 6840 5946 6 1183 1445 244 79 49 chr5 78477422 78477990 -74059269 - Lx7 LINE L1 -2 7694 7110 6 1183 238 204 330 20 chr5 78478147 78478194 -74059065 + Lx3B LINE L1 6044 6090 -886 6 1183 348 24 0 0 chr5 78478194 78478235 -74059024 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1183 933 9 0 0 chr5 78478235 78478340 -74058919 + (GA)n Simple_repeat Simple_repeat 1 106 0 6 1183 259 169 39 1 chr5 78478340 78478391 -74058868 + Lx3B LINE L1 6091 6174 -799 6 1183 258 261 84 84 chr5 78478865 78479007 -74058252 + MLT1H LTR MaLR 60 201 -348 6 1183 230 400 7 36 chr5 78479233 78479373 -74057886 + MIRb SINE MIR 117 252 -16 6 1183 2661 140 87 8 chr5 78480049 78480118 -74057141 - RLTR11A LTR ERVK 0 528 448 6 1183 330 87 0 0 chr5 78480118 78480164 -74057095 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1183 2661 140 87 8 chr5 78480164 78480578 -74056681 - RLTR11A LTR ERVK -81 447 8 6 1183 624 252 61 61 chr5 78481095 78481340 -74055919 - MLT1B LTR MaLR -119 271 27 6 1183 309 145 0 0 chr5 78481826 78481888 -74055371 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1183 725 223 0 13 chr5 78482339 78482489 -74054770 - B1_Mur2 SINE Alu 0 149 2 6 1183 292 286 11 26 chr5 78483235 78483341 -74053918 - ORR1E LTR MaLR -4 375 256 6 1183 371 73 18 0 chr5 78483454 78483509 -74053750 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1183 311 346 57 103 chr5 78483811 78484111 -74053148 - ORR1E LTR MaLR -68 291 6 6 1183 840 192 71 0 chr5 78484123 78484305 -74052954 - B2_Mm2 SINE B2 0 195 1 6 1183 512 317 80 38 chr5 78484473 78484762 -74052497 + MLT1A0 LTR MaLR 1 301 -64 6 1183 296 348 53 57 chr5 78486133 78486381 -74050878 - MLT1H LTR MaLR -296 253 1 6 1183 276 53 0 0 chr5 78486547 78486585 -74050674 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 6 1183 548 150 266 0 chr5 78486586 78486699 -74050560 - B1_Mus1 SINE Alu -1 147 5 6 1183 1498 258 79 32 chr5 78486765 78487362 -74049897 + L1_Mur3 LINE L1 2500 3124 -2756 6 1183 264 30 0 0 chr5 78487366 78487399 -74049860 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1183 300 67 50 0 chr5 78487752 78487812 -74049447 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1183 546 16 0 0 chr5 78487815 78487878 -74049381 + (TC)n Simple_repeat Simple_repeat 2 64 0 6 1183 421 311 99 0 chr5 78488405 78488588 -74048671 - MIRc SINE MIR -51 217 13 6 1183 23 0 0 0 chr5 78490882 78490905 -74046354 + AT_rich Low_complexity Low_complexity 1 23 0 6 1183 1638 159 81 78 chr5 78491311 78491658 -74045601 + ORR1B1 LTR MaLR 47 394 0 6 1183 186 43 0 0 chr5 78492332 78492355 -74044904 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 6 1183 2314 317 81 42 chr5 78492859 78494001 -74043258 - Lx8 LINE L1 0 7473 6288 6 1183 243 251 0 3 chr5 78494002 78494053 -74043206 - PB1D9 SINE Alu -8 141 69 6 1183 660 243 61 89 chr5 78494403 78494838 -74042421 + RMER2 LTR ERV1 1 541 -26 6 1183 312 350 66 85 chr5 78497425 78497790 -74039469 + ORR1E LTR MaLR 1 358 -1 6 1183 225 0 0 0 chr5 78498413 78498438 -74038821 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 6 1183 242 349 120 30 chr5 78499461 78499727 -74037532 + L2 LINE L2 2662 2951 -468 6 1183 192 333 10 106 chr5 78500032 78500136 -74037123 + L2c LINE L2 3280 3373 -14 1 1183 22 0 0 0 chr5 78500384 78500406 -74036853 + AT_rich Low_complexity Low_complexity 1 22 0 2 1183 359 288 45 104 chr5 78500463 78500701 -74036558 - MTEa LTR MaLR -2 377 141 3 1183 411 262 46 9 chr5 78500715 78500823 -74036436 - MTEa LTR MaLR -205 174 63 3 1183 216 97 0 0 chr5 78500925 78500956 -74036303 + (CCA)n Simple_repeat Simple_repeat 1 31 0 4 1183 417 20 0 0 chr5 78501730 78501780 -74035479 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1183 1227 263 63 24 chr5 78502643 78503025 -74034234 + Lx7 LINE L1 6973 7369 -327 6 1183 426 20 0 0 chr5 78503050 78503101 -74034158 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1183 302 278 28 0 chr5 78503206 78503314 -74033945 + Lx7 LINE L1 7586 7696 0 6 1183 1528 262 34 31 chr5 78503377 78503536 -74033723 + MTC LTR MaLR 4 154 -267 8 1183 5716 71 3 1 chr5 78503536 78504283 -74032976 - L1_Mus2 LINE L1 0 6566 5819 9 1183 1528 262 34 31 chr5 78504283 78504540 -74032719 + MTC LTR MaLR 155 421 0 8 1183 22 70 0 0 chr5 78504665 78504708 -74032551 + AT_rich Low_complexity Low_complexity 1 43 0 1 1183 3048 67 0 0 chr5 78504839 78505225 -74032034 - L1_Mus2 LINE L1 -2 6564 6179 1 1183 381 22 0 0 chr5 78505231 78505277 -74031982 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 1 1183 869 349 45 8 chr5 78505392 78505770 -74031489 - Lx8 LINE L1 -275 7198 6807 1 1183 183 275 0 0 chr5 78506099 78506139 -74031120 - MER5A DNA MER1_type 0 189 150 1 1183 211 298 123 61 chr5 78506527 78506729 -74030530 - L2a LINE L2 -69 3357 3197 1 1183 7005 124 16 5 chr5 78506819 78508454 -74028805 + Lx LINE L1 5008 6654 0 1 1183 754 280 45 22 chr5 78509111 78509334 -74027925 - B4A SINE B4 -62 230 3 1 1183 424 305 69 56 chr5 78509482 78509642 -74027617 - B3A SINE B2 -34 164 3 1 1183 888 284 92 82 chr5 78509807 78510175 -74027084 - MTEa LTR MaLR 0 379 8 1 1183 2926 58 0 16 chr5 78510244 78510264 -74026995 - L1_Mus2 LINE L1 -599 5967 5953 2 1183 1090 67 16 104 chr5 78510264 78510447 -74026812 - L1_Mus2 LINE L1 -4 6562 6396 2 1183 4453 79 0 9 chr5 78510447 78511138 -74026121 - L1_Mus2 LINE L1 -614 5952 5263 2 1183 547 356 31 0 chr5 78511265 78511490 -74025769 - MIR SINE MIR -20 242 11 2 1183 207 0 0 0 chr5 78511883 78511906 -74025353 + (T)n Simple_repeat Simple_repeat 1 23 0 2 147 1264 272 132 6 chr5 78512108 78512625 -74024634 - Lx9 LINE L1 -1 7643 7062 2 1184 401 355 61 68 chr5 78513189 78513515 -74023744 + ORR1E LTR MaLR 25 348 -11 2 1184 570 338 73 19 chr5 78513554 78513759 -74023500 - MER20 DNA MER1_type -3 216 1 2 1184 1249 252 60 3 chr5 78513909 78514259 -74023000 - ORR1D2 LTR MaLR 0 370 1 2 1184 207 0 0 0 chr5 78515433 78515456 -74021803 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1184 3443 25 2 0 chr5 78515807 78516202 -74021057 + MTA_Mm LTR MaLR 1 396 0 2 1184 9520 19 2 0 chr5 78516202 78517298 -74019961 + MTA_Mm-int LTR MaLR 1 1098 0 2 1184 2907 31 3 0 chr5 78517298 78517653 -74019606 + MTA_Mm LTR MaLR 1 356 -40 2 1184 10510 11 38 0 chr5 78517653 78519567 -74017692 - MERVL-int LTR ERVL -3499 1986 1 3 1184 4202 14 12 12 chr5 78519567 78520060 -74017199 - MT2_Mm LTR ERVL 0 493 1 3 1184 38457 35 4 7 chr5 78520257 78526422 -74010837 - L1Md_T LINE L1 0 6582 440 3 1184 468 0 0 0 chr5 78526991 78527043 -74010216 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1184 327 104 0 0 chr5 78527596 78527644 -74009615 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1184 1588 317 68 43 chr5 78527707 78528000 -74009259 - Lx8 LINE L1 -185 7288 6963 3 1184 396 0 0 0 chr5 78528000 78528044 -74009215 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1184 1588 317 68 43 chr5 78528044 78528515 -74008744 - Lx8 LINE L1 -511 6962 6506 3 1184 3709 192 78 24 chr5 78528520 78529574 -74007685 - RMER12 LTR ERVK -5 1317 1 3 1184 942 293 32 29 chr5 78529574 78529915 -74007344 - Lx8 LINE L1 -964 6509 6168 3 1184 49 0 0 0 chr5 78529915 78529964 -74007295 + AT_rich Low_complexity Low_complexity 1 49 0 3 1184 245 262 120 9 chr5 78530334 78530442 -74006817 + MIRc SINE MIR 129 248 -20 3 1184 237 336 127 0 chr5 78531788 78531898 -74005361 - MIR SINE MIR -69 193 70 3 1184 191 273 91 0 chr5 78532379 78532434 -74004825 - MIR SINE MIR -133 129 70 4 1184 292 355 19 9 chr5 78533282 78533390 -74003869 - MLT1N2 LTR MaLR -346 216 108 4 1184 399 41 0 0 chr5 78534264 78534313 -74002946 + (TAGG)n Simple_repeat Simple_repeat 2 50 0 4 1184 245 272 22 0 chr5 78534318 78534410 -74002849 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 4 1184 909 83 0 0 chr5 78534709 78534841 -74002418 + (TC)n Simple_repeat Simple_repeat 2 133 0 4 1184 195 42 0 0 chr5 78534848 78534872 -74002387 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1184 1330 189 42 16 chr5 78535075 78535387 -74001872 - Lx9 LINE L1 -1 7643 7324 4 1184 33696 79 13 6 chr5 78535388 78541306 -73995953 - L1Md_F2 LINE L1 -2 6580 648 4 1184 2095 105 78 17 chr5 78541483 78541831 -73995428 - Lx LINE L1 0 6654 6286 4 1184 4766 99 77 3 chr5 78541831 78542542 -73994717 - Lx3_Mus LINE L1 -109 6900 6137 4 1184 1775 112 82 0 chr5 78542537 78542831 -73994428 + Lx3_Mus LINE L1 5822 6139 -870 4 1184 216 0 0 0 chr5 78544332 78544356 -73992903 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1184 252 139 0 0 chr5 78544799 78544842 -73992417 - Lx8 LINE L1 -10 7463 7421 5 1184 461 249 62 9 chr5 78544852 78545079 -73992180 - Lx9 LINE L1 -2 7642 7404 5 1184 338 374 17 41 chr5 78545158 78545448 -73991811 - Lx8 LINE L1 -119 7354 7072 5 1184 260 161 16 0 chr5 78545451 78545513 -73991746 + (TG)n Simple_repeat Simple_repeat 2 64 0 5 1184 488 322 29 16 chr5 78545527 78545700 -73991559 - B3A SINE B2 -13 203 30 5 1184 32 0 0 0 chr5 78546306 78546338 -73990921 + AT_rich Low_complexity Low_complexity 1 32 0 5 1184 535 253 10 108 chr5 78546551 78546609 -73990650 - B3A SINE B2 -3 195 140 5 1184 486 0 0 0 chr5 78546609 78546663 -73990596 + (TC)n Simple_repeat Simple_repeat 2 55 0 5 1184 297 0 0 0 chr5 78546663 78546695 -73990564 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1184 608 273 1 0 chr5 78546695 78546830 -73990429 - B3 SINE B2 -45 153 17 5 1184 1016 144 34 6 chr5 78547375 78547550 -73989709 + B2_Mm2 SINE B2 2 181 -14 6 1184 4758 196 81 8 chr5 78547721 78547738 -73989521 - Lx2B LINE L1 -15 6985 6969 6 1184 270 0 0 0 chr5 78547738 78547768 -73989491 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 6 1184 4758 196 81 8 chr5 78547768 78548855 -73988404 - Lx2B LINE L1 -32 6968 5800 6 1184 1665 192 80 36 chr5 78548851 78549266 -73987993 + Lx2B LINE L1 5408 5835 -1165 6 1184 28 29 0 0 chr5 78549268 78549303 -73987956 + AT_rich Low_complexity Low_complexity 1 35 0 6 1184 642 322 80 18 chr5 78550297 78550635 -73986624 - ORR1E LTR MaLR 0 359 1 6 1184 214 317 0 35 chr5 78550644 78550729 -73986530 + CT-rich Low_complexity Low_complexity 3 84 0 6 1184 324 369 40 47 chr5 78550732 78550880 -73986379 - MLT2D LTR ERVL -150 264 118 6 1184 417 274 0 48 chr5 78550918 78551055 -73986204 + RSINE1 SINE B4 27 157 -8 6 1184 657 178 0 0 chr5 78551082 78551239 -73986020 + (TA)n Simple_repeat Simple_repeat 1 157 0 6 1184 267 146 0 0 chr5 78551265 78551320 -73985939 + (CCA)n Simple_repeat Simple_repeat 1 55 0 6 1184 349 341 69 46 chr5 78551372 78551547 -73985712 + B3A SINE B2 2 180 -18 7 1184 329 245 0 48 chr5 78551610 78551713 -73985546 - MLT2D LTR ERVL -314 100 3 6 1184 486 248 0 58 chr5 78552989 78553109 -73984150 - Lx7 LINE L1 -544 7152 7040 7 1184 477 274 11 0 chr5 78553180 78553275 -73983984 - B4A SINE B4 -93 199 104 7 1184 2241 205 146 14 chr5 78553280 78553634 -73983625 - RMER17B LTR ERVK -247 711 307 7 1184 231 36 0 0 chr5 78553634 78553662 -73983597 + (GA)n Simple_repeat Simple_repeat 2 29 0 7 1184 2241 205 146 14 chr5 78553662 78553881 -73983378 - RMER17B LTR ERVK -652 306 63 7 1184 408 181 43 0 chr5 78553890 78553984 -73983275 - L1Md_F2 LINE L1 0 6582 6485 7 1184 850 67 0 0 chr5 78553984 78554088 -73983171 + L1_Mus1 LINE L1 6327 6430 -137 7 1184 438 213 0 0 chr5 78554089 78554164 -73983095 - RMER17B LTR ERVK -883 75 1 7 1184 266 337 11 57 chr5 78554167 78554255 -73983004 - B4A SINE B4 -193 99 16 7 1184 26 30 0 0 chr5 78554464 78554497 -73982762 + AT_rich Low_complexity Low_complexity 1 33 0 7 1184 291 54 0 0 chr5 78554735 78554772 -73982487 + (GA)n Simple_repeat Simple_repeat 2 38 0 7 1184 504 0 0 0 chr5 78554872 78554928 -73982331 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 7 1184 873 221 102 76 chr5 78555917 78556220 -73981039 - Lx9 LINE L1 -321 7323 7013 8 1184 263 167 0 0 chr5 78556223 78556265 -73980994 + Lx9 LINE L1 6948 6989 -655 8 1184 1319 255 95 138 chr5 78556303 78556623 -73980636 - MYSERV16_I-int LTR ERVK -401 2441 2106 8 1184 549 80 0 0 chr5 78556623 78556698 -73980561 + (TA)n Simple_repeat Simple_repeat 2 76 0 8 1184 1897 193 62 48 chr5 78556698 78557333 -73979926 - MYSERV16_I-int LTR ERVK -737 2105 1067 8 1184 36796 7 0 1 chr5 78557333 78562884 -73974375 + L1Md_A LINE L1 39 5586 -297 8 1184 9051 1 1 0 chr5 78562884 78563879 -73973380 + L1Md_A LINE L1 5587 6582 0 8 1184 2885 196 74 25 chr5 78563881 78564723 -73972536 - MYSERV16_I-int LTR ERVK -1449 1393 1 8 1184 5564 25 11 0 chr5 78565226 78565880 -73971379 - L1Md_F3 LINE L1 -14 6570 5910 8 1184 579 225 62 45 chr5 78566440 78566617 -73970642 - RLTR20A2 LTR ERVK -2 576 397 8 1184 619 225 126 29 chr5 78566612 78566818 -73970441 - RLTR20A2 LTR ERVK -352 226 1 8 1184 630 355 85 12 chr5 78566836 78567343 -73969916 - Lx8 LINE L1 -350 7123 6580 8 1184 232 293 92 96 chr5 78567909 78568158 -73969101 - ORR1D1 LTR MaLR -42 332 85 8 1184 4494 153 20 34 chr5 78568412 78569218 -73968041 - RMER13B LTR ERVK -111 797 3 8 1184 218 257 42 58 chr5 78569252 78569372 -73967887 - MIR SINE MIR -32 230 113 8 1184 245 357 129 18 chr5 78569406 78569577 -73967682 + ORR1E LTR MaLR 4 193 -166 9 1184 4423 16 0 0 chr5 78569993 78570486 -73966773 + MT2_Mm LTR ERVL 1 493 0 9 1184 45518 17 0 0 chr5 78570486 78575844 -73961415 + MERVL-int LTR ERVL 1 5360 -125 9 1184 373 179 46 35 chr5 78575844 78575931 -73961328 + ORR1A3-int LTR MaLR 553 640 -1323 9 1184 302 0 0 0 chr5 78575931 78575969 -73961290 + MERVL-int LTR ERVL 5448 5485 0 9 1184 4423 16 0 0 chr5 78575969 78576462 -73960797 + MT2_Mm LTR ERVL 1 493 0 9 1184 473 316 60 46 chr5 78576550 78576835 -73960424 - B4A SINE B4 0 292 4 9 1184 216 103 26 0 chr5 78577432 78577471 -73959788 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1184 954 288 91 3 chr5 78577808 78578160 -73959099 + Lx8 LINE L1 6297 6679 -794 9 1184 794 299 112 80 chr5 78578221 78578554 -73958705 + Lx8 LINE L1 6800 7164 -309 9 1184 639 63 298 26 chr5 78578554 78578668 -73958591 - B1_Mus2 SINE Alu -1 146 2 9 1184 794 299 112 80 chr5 78578668 78578719 -73958540 + Lx8 LINE L1 7165 7216 -257 9 1184 186 43 0 0 chr5 78578719 78578742 -73958517 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 9 1184 794 299 112 80 chr5 78578742 78578982 -73958277 + Lx8 LINE L1 7217 7445 -28 9 1184 587 217 17 0 chr5 78578991 78579106 -73958153 + B1_Mur1 SINE Alu 25 141 -8 9 1184 290 299 46 100 chr5 78578992 78579122 -73958137 + B4 SINE B4 111 233 -59 9 1184 7134 59 5 9 chr5 78579439 78580402 -73956857 + L1_Mus1 LINE L1 5615 6653 -1 1 1184 321 339 215 18 chr5 78580472 78580811 -73956448 + L2 LINE L2 2472 2877 -542 1 1184 255 278 60 30 chr5 78580923 78581023 -73956236 + MIR SINE MIR 146 248 -14 1 1184 1109 271 157 14 chr5 78581584 78581940 -73955319 - MTD LTR MaLR -12 407 1 1 1184 33783 54 23 13 chr5 78582981 78588453 -73948806 + L1Md_T LINE L1 106 5586 -297 1 1184 8020 53 2 0 chr5 78588454 78589447 -73947812 + L1Md_T LINE L1 5588 6582 0 1 1184 1620 35 2 0 chr5 78590287 78590713 -73946546 + (TTC)n Simple_repeat Simple_repeat 1 427 0 1 1184 186 71 0 0 chr5 78590713 78590741 -73946518 + (CTG)n Simple_repeat Simple_repeat 1 28 0 1 1184 1211 58 6 0 chr5 78590741 78590914 -73946345 + (TTC)n Simple_repeat Simple_repeat 2 175 0 1 1184 257 0 30 0 chr5 78590914 78590947 -73946312 + (TTTTC)n Simple_repeat Simple_repeat 5 38 0 1 1184 4500 103 32 8 chr5 78590948 78591605 -73945654 - Lx LINE L1 -1 6653 5981 1 1184 218 216 14 0 chr5 78593397 78593471 -73943788 + (CATATA)n Simple_repeat Simple_repeat 5 79 0 1 1184 201 279 29 0 chr5 78593472 78593540 -73943719 + (CATA)n Simple_repeat Simple_repeat 1 70 0 1 1184 507 167 0 0 chr5 78593555 78593669 -73943590 + (CA)n Simple_repeat Simple_repeat 1 114 0 1 1184 543 48 36 0 chr5 78594229 78594312 -73942947 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 1 1184 584 319 71 15 chr5 78594322 78594639 -73942620 - MLT2D LTR ERVL -58 339 1 1 1184 299 261 129 41 chr5 78595152 78595322 -73941937 - MTEa LTR MaLR 0 379 182 1 1184 22 35 0 0 chr5 78596215 78596244 -73941015 + AT_rich Low_complexity Low_complexity 1 29 0 1 1184 225 0 0 0 chr5 78596581 78596606 -73940653 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1184 351 0 0 0 chr5 78596606 78596644 -73940615 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1184 1247 54 0 0 chr5 78596806 78596954 -73940305 - B1_Mus1 SINE Alu 0 148 1 1 1184 240 224 0 0 chr5 78596987 78597054 -73940205 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1184 1555 80 18 4 chr5 78597848 78598074 -73939185 + Lx LINE L1 6426 6654 0 1 1184 422 79 16 0 chr5 78599436 78599499 -73937760 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1184 384 59 0 0 chr5 78599499 78599550 -73937709 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1184 23 33 0 0 chr5 78599602 78599632 -73937627 + AT_rich Low_complexity Low_complexity 1 30 0 1 1184 204 158 0 0 chr5 78600330 78600368 -73936891 + CT-rich Low_complexity Low_complexity 3 40 0 1 1184 1052 336 53 37 chr5 78600721 78601122 -73936137 + Lx8 LINE L1 6709 7112 -361 1 1184 2994 47 42 13 chr5 78601122 78601507 -73935752 - MTA_Mm LTR MaLR 0 396 1 1 1184 1052 336 53 37 chr5 78601507 78601724 -73935535 + Lx8 LINE L1 7113 7337 -136 1 1184 4507 148 6 2 chr5 78601732 78602522 -73934737 - L1_Mus3 LINE L1 -557 5326 4534 1 1184 6919 112 6 5 chr5 78602520 78603814 -73933445 + L1_Mus3 LINE L1 5342 6638 0 1 1184 540 210 429 44 chr5 78604228 78604503 -73932756 - ORR1C2 LTR MaLR 0 384 3 1 1184 2356 39 3 0 chr5 78604943 78605229 -73932030 + L1Md_A LINE L1 6296 6582 0 1 1184 365 354 107 57 chr5 78605498 78605938 -73931321 + LTR40b LTR ERVL 1 462 0 1 1184 186 419 79 6 chr5 78606941 78607282 -73929977 - L2a LINE L2 -107 3319 2954 1 1184 3873 251 48 32 chr5 78607494 78608628 -73928631 + Lx6 LINE L1 6309 7460 0 1 1184 731 352 105 46 chr5 78608633 78609288 -73927971 - L2a LINE L2 -752 2667 1974 1 1184 208 353 34 10 chr5 78609551 78609697 -73927562 - L2b LINE L2 -144 3243 3090 1 1184 498 116 23 11 chr5 78609712 78609799 -73927460 + URR1B DNA MER1_type 138 225 0 1 1184 590 161 26 184 chr5 78609956 78610108 -73927151 + MTE2b LTR MaLR 3 130 -249 1 1184 21 36 0 0 chr5 78610221 78610249 -73927010 + AT_rich Low_complexity Low_complexity 1 28 0 1 1184 1026 135 67 13 chr5 78610249 78610474 -73926785 + Lx9 LINE L1 7284 7520 -124 1 1184 825 146 17 6 chr5 78610497 78610676 -73926583 + Lx9 LINE L1 7464 7644 0 1 1184 618 341 26 17 chr5 78610710 78610943 -73926316 + MTE2b LTR MaLR 139 373 -6 1 1184 4128 300 39 31 chr5 78610943 78612508 -73924751 + MTE2b-int LTR MaLR 2 1579 -1 1 1184 1013 288 32 75 chr5 78612510 78612855 -73924404 + MTE2b LTR MaLR 22 351 -28 1 1184 258 32 0 0 chr5 78612876 78612907 -73924352 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1184 649 314 96 0 chr5 78613525 78613745 -73923514 + B4A SINE B4 1 241 -51 1 1184 509 323 58 14 chr5 78613744 78613967 -73923292 + Tigger5 DNA MER2_type 6 238 -2168 1 1184 251 211 0 0 chr5 78614232 78614289 -73922970 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 1 1184 4398 96 53 0 chr5 78614416 78615055 -73922204 - L1_Mus3 LINE L1 -4 6634 5962 1 1184 6204 113 4 0 chr5 78615056 78616103 -73921156 + L1_Mus3 LINE L1 4928 5978 -660 1 1184 1920 161 3 3 chr5 78616142 78616453 -73920806 + RLTR10E LTR ERVK 1 311 0 1 1184 1393 98 122 24 chr5 78616453 78616725 -73920534 + RLTR10-int LTR ERVK 1 337 -7244 1 1184 596 156 33 0 chr5 78616725 78616847 -73920412 + RLTR10-int LTR ERVK 747 872 -6709 1 1184 1217 165 148 12 chr5 78616819 78617076 -73920183 + IAPEY3-int LTR ERVK 312 603 -4803 1 1184 267 325 17 8 chr5 78617242 78617360 -73919899 + IAPEY3-int LTR ERVK 822 940 -5602 1 1184 276 259 61 18 chr5 78617375 78617489 -73919770 + IAPEY3-int LTR ERVK 1448 1566 -6015 1 1184 263 218 36 0 chr5 78617506 78617561 -73919698 + IAP-d-int LTR ERVK 447 503 -6039 1 1184 1403 128 102 0 chr5 78617561 78617787 -73919472 + IAP-d-int LTR ERVK 5007 5255 -1287 1 1184 4225 112 8 3 chr5 78617787 78618470 -73918789 + IAPEY3-int LTR ERVK 6965 7680 0 1 1184 1919 164 3 3 chr5 78618470 78618781 -73918478 + RLTR10E LTR ERVK 1 311 0 1 1184 264 59 0 0 chr5 78618789 78618823 -73918436 + (CTA)n Simple_repeat Simple_repeat 3 36 0 1 1184 277 221 9 9 chr5 78618821 78618926 -73918333 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 1184 795 265 9 36 chr5 78619772 78619995 -73917264 + ID_B1 SINE B4 4 220 -4 1 1184 234 0 0 0 chr5 78620049 78620075 -73917184 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1184 25 0 0 0 chr5 78620419 78620444 -73916815 + AT_rich Low_complexity Low_complexity 1 25 0 1 1184 474 75 0 0 chr5 78620491 78620558 -73916701 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1184 365 153 11 45 chr5 78620689 78620778 -73916481 - Lx9 LINE L1 -53 7591 7506 1 1184 647 248 44 0 chr5 78620896 78621033 -73916226 - B1_Mur1 SINE Alu 0 149 7 1 1184 293 321 159 45 chr5 78621029 78621185 -73916074 - Arthur1B DNA Tip100 -269 956 790 1 1184 459 0 0 0 chr5 78621185 78621236 -73916023 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1 1184 293 324 174 35 chr5 78621236 78621484 -73915775 - Arthur1B DNA Tip100 -436 789 495 1 1184 725 194 0 6 chr5 78621722 78621878 -73915381 + CT-rich Low_complexity Low_complexity 4 158 0 1 1184 3632 144 18 56 chr5 78621878 78622367 -73914892 - Lx3A LINE L1 0 6981 6519 1 1184 1143 50 14 0 chr5 78622367 78622508 -73914751 - B1_Mm SINE Alu -4 143 1 1 1184 3632 144 18 56 chr5 78622508 78622693 -73914566 - Lx3A LINE L1 -463 6518 6333 1 1184 1141 82 52 6 chr5 78622693 78622846 -73914413 + B2_Mm2 SINE B2 10 166 -29 1 1184 258 32 0 0 chr5 78622846 78622877 -73914382 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 1 1184 1141 82 52 6 chr5 78622877 78622895 -73914364 + B2_Mm2 SINE B2 167 189 -6 1 1184 23 0 0 0 chr5 78623523 78623546 -73913713 + AT_rich Low_complexity Low_complexity 1 23 0 1 1184 844 172 12 6 chr5 78623780 78623944 -73913315 + Lx2 LINE L1 6831 6995 -2 1 1184 553 288 172 90 chr5 78624856 78625123 -73912136 - B4A SINE B4 0 292 4 1 1184 32 26 0 0 chr5 78625365 78625404 -73911855 + AT_rich Low_complexity Low_complexity 1 39 0 1 1184 350 338 86 29 chr5 78625424 78625564 -73911695 - RSINE1 SINE B4 -10 155 8 1 1184 366 23 0 0 chr5 78626110 78626153 -73911106 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1184 885 83 0 0 chr5 78626153 78626284 -73910975 + (GA)n Simple_repeat Simple_repeat 2 133 0 1 1184 254 90 43 29 chr5 78627745 78627814 -73909445 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 1 1184 38488 6 0 0 chr5 78628195 78633565 -73903694 + L1Md_A LINE L1 215 5586 -297 1 1184 8960 5 0 0 chr5 78633565 78634561 -73902698 + L1Md_A LINE L1 5587 6582 0 1 1184 940 221 23 0 chr5 78634600 78634817 -73902442 + URR1A DNA MER1_type 5 226 0 1 1184 245 135 18 71 chr5 78635149 78635205 -73902054 + L1M5 LINE L1 5407 5459 -703 1 1184 363 279 6 78 chr5 78636180 78636347 -73900912 + L1M5 LINE L1 5407 5561 -603 1 1184 22 35 0 0 chr5 78636390 78636419 -73900840 + AT_rich Low_complexity Low_complexity 1 29 0 1 1184 31 88 0 0 chr5 78637591 78637671 -73899588 + AT_rich Low_complexity Low_complexity 1 80 0 1 1184 527 78 0 13 chr5 78638192 78638270 -73898989 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 1 1184 2130 225 47 7 chr5 78638283 78638734 -73898525 + Lx6 LINE L1 6189 6657 -803 1 1184 1754 188 15 42 chr5 78638759 78639092 -73898167 - ORR1B1 LTR MaLR -68 326 3 1 1184 3573 236 38 80 chr5 78639094 78639815 -73897444 + Lx7 LINE L1 6664 7360 -336 1 1184 702 65 0 0 chr5 78639815 78639907 -73897352 + (CA)n Simple_repeat Simple_repeat 2 93 0 1 1184 3573 236 38 80 chr5 78639907 78640247 -73897012 + Lx7 LINE L1 7361 7680 -16 1 1184 26 50 0 0 chr5 78640335 78640375 -73896884 + AT_rich Low_complexity Low_complexity 1 40 0 1 1184 312 327 29 29 chr5 78640387 78640455 -73896804 + RSINE1 SINE B4 60 126 -39 1 1184 234 0 0 0 chr5 78640455 78640481 -73896778 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1184 312 327 29 29 chr5 78640481 78640516 -73896743 + RSINE1 SINE B4 127 163 -2 1 1184 540 0 0 0 chr5 78641864 78641924 -73895335 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1184 23 0 0 0 chr5 78642420 78642443 -73894816 + AT_rich Low_complexity Low_complexity 1 23 0 1 1185 277 291 103 31 chr5 78643650 78643902 -73893357 + MTEa LTR MaLR 67 379 0 1 1185 336 24 0 0 chr5 78645289 78645330 -73891929 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1185 2071 148 3 3 chr5 78645596 78645922 -73891337 - ORR1A3 LTR MaLR 0 326 1 1 1185 213 358 9 95 chr5 78647687 78647792 -73889467 - B1F1 SINE Alu -53 96 1 1 1185 2271 131 37 3 chr5 78648459 78648833 -73888426 - Lx3A LINE L1 -6 6975 6589 1 1185 360 341 70 54 chr5 78648867 78649109 -73888150 - MLT1B LTR MaLR -134 256 11 1 1185 225 108 0 0 chr5 78649117 78649154 -73888105 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1185 282 303 68 38 chr5 78649154 78649391 -73887868 + L1MC1 LINE L1 5774 6017 -316 1 1185 2802 231 56 1 chr5 78649923 78650579 -73886680 - Lx9 LINE L1 -321 7323 6632 1 1185 573 101 0 0 chr5 78651286 78651375 -73885884 - Lx2 LINE L1 0 6997 6909 1 1185 2623 189 24 17 chr5 78651451 78652026 -73885233 - RMER6C LTR ERVK 0 690 112 1 1185 441 0 0 0 chr5 78652199 78652248 -73885011 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1185 200 288 0 0 chr5 78652350 78652383 -73884876 + T-rich Low_complexity Low_complexity 27 59 0 1 1185 918 142 0 20 chr5 78652383 78652534 -73884725 - B1_Mus1 SINE Alu 0 148 1 2 1185 200 288 0 0 chr5 78652534 78652559 -73884700 + T-rich Low_complexity Low_complexity 2 26 0 2 1185 472 161 40 16 chr5 78652660 78652786 -73884473 - Lx9 LINE L1 0 7644 7516 2 1185 360 0 0 0 chr5 78652791 78652831 -73884428 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1185 922 208 11 6 chr5 78652831 78653010 -73884249 + Lx9 LINE L1 7066 7245 -399 2 1185 21 0 0 0 chr5 78653290 78653311 -73883948 + AT_rich Low_complexity Low_complexity 1 21 0 2 1185 230 0 33 0 chr5 78653313 78653343 -73883916 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1185 2864 71 53 2 chr5 78654303 78654700 -73882559 - L1_Mus1 LINE L1 0 6567 6151 2 1185 21 0 0 0 chr5 78656818 78656839 -73880420 + AT_rich Low_complexity Low_complexity 1 21 0 2 1185 210 290 65 0 chr5 78657130 78657192 -73880067 - MIRc SINE MIR -115 153 88 2 1185 1282 243 35 83 chr5 78658779 78659260 -73877999 - Lx7 LINE L1 0 7696 7239 2 1185 625 270 40 5 chr5 78659258 78659459 -73877800 + Lx7 LINE L1 7026 7233 -463 2 1185 238 174 86 14 chr5 78660139 78660209 -73877050 + Zaphod DNA Tip100 2867 2941 -1090 2 1185 424 296 127 51 chr5 78660449 78660508 -73876751 + L1M3e LINE L1 41 103 -6927 2 1185 4203 45 0 0 chr5 78660508 78661014 -73876245 + L1Md_T LINE L1 6077 6582 0 2 1185 424 296 127 51 chr5 78661014 78661246 -73876013 + L1M3e LINE L1 104 354 -6676 2 1185 321 305 78 17 chr5 78661324 78661554 -73875705 + L1M3e LINE L1 1852 2095 -4935 2 1185 2144 76 3 0 chr5 78661676 78661966 -73875293 + ORR1A1 LTR MaLR 1 291 -55 2 1185 28 0 0 0 chr5 78661966 78661994 -73875265 + AT_rich Low_complexity Low_complexity 1 28 0 2 1185 8038 36 31 0 chr5 78662139 78663139 -73874120 - L1Md_F2 LINE L1 -13 6569 5552 2 1185 915 56 0 0 chr5 78663192 78663317 -73873942 + ORR1A1 LTR MaLR 1 125 -221 2 1185 6936 65 2 0 chr5 78663317 78664198 -73873061 - L1_Mm LINE L1 -180 5703 4821 2 1185 431 69 0 0 chr5 78664217 78664275 -73872984 + ORR1A1 LTR MaLR 281 338 -8 2 1185 249 197 76 0 chr5 78664299 78664365 -73872894 - Tigger5 DNA MER2_type -42 2364 2294 2 1185 377 361 42 12 chr5 78664363 78664531 -73872728 - Tigger5 DNA MER2_type -2163 243 72 2 1185 372 266 45 7 chr5 78664638 78664793 -73872466 + Lx6 LINE L1 7289 7449 -11 2 1185 305 285 83 6 chr5 78664809 78664989 -73872270 + L1M3e LINE L1 2163 2356 -4681 2 1185 528 111 0 0 chr5 78664989 78665070 -73872189 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 2 1185 273 163 0 0 chr5 78665465 78665514 -73871745 + A-rich Low_complexity Low_complexity 14 62 0 2 1185 276 30 0 0 chr5 78665530 78665563 -73871696 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1185 405 0 0 0 chr5 78665563 78665607 -73871652 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1185 657 148 0 0 chr5 78665632 78665760 -73871499 + (GA)n Simple_repeat Simple_repeat 1 128 0 2 1185 180 27 26 51 chr5 78665982 78666021 -73871238 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2 1185 4056 57 2 2 chr5 78666879 78667388 -73869871 - L1Md_F2 LINE L1 0 6582 6074 2 1185 624 314 35 39 chr5 78667516 78667774 -73869485 - ORR1D2 LTR MaLR -113 257 1 2 1185 1275 66 0 0 chr5 78667796 78667962 -73869297 - L1Md_F2 LINE L1 -1435 4448 4283 2 1185 8935 59 3 1 chr5 78667960 78669098 -73868161 + L1Md_F2 LINE L1 4447 5586 -297 2 1185 7859 53 2 4 chr5 78669098 78670092 -73867167 + L1Md_F2 LINE L1 5587 6578 -4 2 1185 2872 82 5 3 chr5 78670092 78670484 -73866775 + L1_Mus1 LINE L1 6175 6567 0 2 1185 22 0 0 0 chr5 78670813 78670835 -73866424 + AT_rich Low_complexity Low_complexity 1 22 0 2 1185 2444 257 92 82 chr5 78671228 78671785 -73865474 + Lx5 LINE L1 6133 6648 -402 2 1185 781 97 17 17 chr5 78671785 78671894 -73865365 + PB1D9 SINE Alu 1 111 -9 2 1185 349 20 0 39 chr5 78671894 78671946 -73865313 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 2 1185 2444 257 92 82 chr5 78671952 78672294 -73864965 + Lx5 LINE L1 6649 7041 -9 2 1185 537 16 0 0 chr5 78672703 78672765 -73864494 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 1185 420 20 0 0 chr5 78672837 78672886 -73864373 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1185 673 331 60 45 chr5 78673147 78673591 -73863668 - MLT1C LTR MaLR -9 618 8 2 1185 3916 99 14 0 chr5 78673652 78674207 -73863052 + L1_Mus1 LINE L1 6005 6567 0 2 1185 2709 125 16 2 chr5 78675176 78675601 -73861658 + Lx LINE L1 6219 6649 -5 2 1185 403 279 26 52 chr5 78675624 78675830 -73861429 + RMER12B LTR ERVK 597 1008 -396 2 1185 198 0 0 0 chr5 78677104 78677126 -73860133 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1185 28 29 0 0 chr5 78678085 78678120 -73859139 + AT_rich Low_complexity Low_complexity 1 35 0 2 1185 5298 153 11 18 chr5 78678123 78679025 -73858234 - Lx3B LINE L1 -11 6962 6067 2 1185 1772 199 45 68 chr5 78679148 78679574 -73857685 + RMER10A LTR ERVL 7 422 -20 2 1185 297 0 0 0 chr5 78679574 78679607 -73857652 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 2 1185 287 85 21 0 chr5 78679685 78679732 -73857527 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 2 1185 1108 135 17 6 chr5 78679790 78679969 -73857290 - B2_Mm2 SINE B2 -11 184 4 2 1185 567 225 56 0 chr5 78679973 78680133 -73857126 - Lx9 LINE L1 -11 7633 7465 2 1185 530 259 69 12 chr5 78681109 78681269 -73855990 + Lx8 LINE L1 6983 7151 -322 2 1185 362 209 11 44 chr5 78681274 78681364 -73855895 - RLTR15 LTR ERVK -14 345 259 2 1185 1170 192 12 20 chr5 78681432 78681682 -73855577 - RLTR15 LTR ERVK -109 250 3 2 1185 346 319 43 0 chr5 78681702 78681818 -73855441 + Lx8 LINE L1 7163 7283 -190 2 1185 35 54 0 0 chr5 78682598 78682654 -73854605 + AT_rich Low_complexity Low_complexity 1 56 0 2 1185 241 154 0 0 chr5 78683499 78683538 -73853721 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1185 588 249 0 0 chr5 78683541 78683706 -73853553 + (CATATA)n Simple_repeat Simple_repeat 6 170 0 2 1185 304 322 0 0 chr5 78683711 78683801 -73853458 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 1185 3001 39 7 72 chr5 78683963 78684378 -73852881 + RLTR10 LTR ERVK 1 388 -2 2 1185 16986 20 3 1 chr5 78684390 78686330 -73850929 + RLTR10-int LTR ERVK 41 1984 -3 2 1185 3023 39 7 72 chr5 78686332 78686749 -73850510 + RLTR10 LTR ERVK 1 390 0 2 1185 286 283 16 74 chr5 78686956 78687078 -73850181 + Lx7 LINE L1 6996 7110 -586 2 1185 267 274 65 9 chr5 78688921 78689028 -73848231 + L1M5 LINE L1 5440 5552 -627 2 1185 4301 143 24 12 chr5 78689376 78690120 -73847139 - RMER6A LTR ERVK -3 753 1 2 1185 370 293 166 63 chr5 78690183 78690515 -73846744 - L1MEc LINE L1 -3364 2955 2590 2 1185 4914 51 5 7 chr5 78691330 78691946 -73845313 + L1Md_F2 LINE L1 5957 6571 -11 2 1185 552 68 0 0 chr5 78692034 78692107 -73845152 + (GA)n Simple_repeat Simple_repeat 2 74 0 2 1185 348 271 105 41 chr5 78692128 78692313 -73844946 - L1MEc LINE L1 -4953 1462 1244 2 1185 186 71 0 0 chr5 78693009 78693037 -73844222 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1185 246 343 181 17 chr5 78693330 78693689 -73843570 - MLT1F LTR MaLR 0 548 131 2 1185 668 45 11 0 chr5 78694326 78694414 -73842845 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 2 1185 232 197 66 0 chr5 78694435 78694496 -73842763 + (CAGAGA)n Simple_repeat Simple_repeat 5 69 0 2 1185 393 22 0 0 chr5 78695655 78695701 -73841558 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1185 213 292 231 8 chr5 78695897 78696018 -73841241 - MIR SINE MIR -114 148 1 2 1185 28 71 0 0 chr5 78696345 78696401 -73840858 + AT_rich Low_complexity Low_complexity 1 56 0 2 1185 208 240 26 13 chr5 78696692 78696768 -73840491 + T-rich Low_complexity Low_complexity 2 78 0 2 1185 388 299 189 67 chr5 78697121 78697523 -73839736 + MLT1C LTR MaLR 1 451 -16 2 1185 207 100 0 0 chr5 78697877 78697907 -73839352 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 2 1185 302 288 120 39 chr5 78697942 78698091 -73839168 - LTR48 LTR ERV1 -12 632 484 2 1185 198 0 0 0 chr5 78698091 78698113 -73839146 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 2 1185 302 299 132 18 chr5 78698113 78698142 -73839117 - LTR48 LTR ERV1 -161 483 448 2 1185 567 308 128 32 chr5 78698227 78698572 -73838687 - LTR48 LTR ERV1 -344 443 66 2 1185 229 296 53 74 chr5 78698670 78698860 -73838399 + RLTR15 LTR ERVK 33 218 -141 2 1185 310 311 43 22 chr5 78698864 78699048 -73838211 + RLTR15 LTR ERVK 158 345 -14 2 1185 341 105 47 0 chr5 78700261 78700347 -73836912 + (TA)n Simple_repeat Simple_repeat 2 91 0 2 1185 657 303 54 61 chr5 78700911 78701224 -73836035 + MER67D LTR ERV1 1 311 -203 2 1185 6755 94 23 1 chr5 78701545 78702491 -73834768 - L1_Mus3 LINE L1 0 6638 5672 2 1185 5672 140 5 10 chr5 78702488 78703416 -73833843 + Lx3A LINE L1 4738 5659 -1322 2 1185 503 300 101 65 chr5 78703646 78703957 -73833302 - MER92B LTR ERV1 -164 390 12 2 1185 332 382 31 25 chr5 78704057 78704218 -73833041 - LTR33C LTR ERVL -467 162 1 2 1185 444 272 79 37 chr5 78705249 78705463 -73831796 - L1MA6 LINE L1 -1 6299 6077 2 1185 221 192 19 19 chr5 78705563 78705616 -73831643 + (CATA)n Simple_repeat Simple_repeat 4 56 0 2 1185 1357 41 0 0 chr5 78705673 78705845 -73831414 - L1Md_A LINE L1 -3 6579 6408 2 1185 3959 24 0 0 chr5 78705845 78706309 -73830950 + L1_Mm LINE L1 4625 5088 -795 2 1185 394 248 103 97 chr5 78706302 78706363 -73830896 + Lx7 LINE L1 7374 7433 -263 2 1185 263 104 21 0 chr5 78706363 78706411 -73830848 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1185 394 248 103 97 chr5 78706411 78706670 -73830589 + Lx7 LINE L1 7434 7696 0 2 1185 8336 101 55 11 chr5 78706679 78708001 -73829258 - Lx3_Mus LINE L1 -738 5148 3769 2 1185 9208 112 11 18 chr5 78708000 78709879 -73827380 + Lx3_Mus LINE L1 5135 6998 -11 2 1185 1098 90 0 0 chr5 78710065 78710209 -73827050 - B1_Mm SINE Alu -2 145 2 2 1185 345 350 56 12 chr5 78710313 78710475 -73826784 - MIR SINE MIR -87 175 7 2 1185 276 100 0 0 chr5 78711647 78711687 -73825572 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2 1185 458 324 54 40 chr5 78711727 78711949 -73825310 - MER82 DNA MER2_type -232 421 197 2 1185 323 267 155 107 chr5 78712697 78712949 -73824310 - Lx8 LINE L1 -1620 5853 5590 2 1185 644 109 114 30 chr5 78714892 78714980 -73822279 + RLTR31B_Mm LTR ERVK 1 100 -457 2 1185 300 27 0 0 chr5 78714980 78715017 -73822242 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 1185 644 109 114 30 chr5 78715017 78715060 -73822199 + RLTR31B_Mm LTR ERVK 101 143 -414 2 1185 6454 57 0 13 chr5 78715060 78715882 -73821377 + L1_Mus1 LINE L1 5751 6561 -6 2 1185 1954 144 9 6 chr5 78715889 78716210 -73821049 + RLTR31B_Mm LTR ERVK 150 471 -86 2 1185 226 262 166 72 chr5 78717232 78717425 -73819834 + Lx8 LINE L1 7261 7471 -2 2 1185 1511 302 88 23 chr5 78717511 78718195 -73819064 + Lx7 LINE L1 6580 7307 -389 2 1185 315 0 0 0 chr5 78718393 78718428 -73818831 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1185 353 374 48 26 chr5 78718824 78718902 -73818357 + RMER15 LTR ERVL 296 370 -205 3 1185 183 42 0 0 chr5 78718902 78718926 -73818333 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 1185 353 374 48 26 chr5 78718926 78719119 -73818140 + RMER15 LTR ERVL 371 572 -3 3 1185 3611 96 137 20 chr5 78719588 78720172 -73817087 - Lx LINE L1 -3 6651 6000 3 1185 1935 84 60 0 chr5 78720165 78720449 -73816810 + Lx LINE L1 5676 5976 -678 3 1185 363 109 18 0 chr5 78721481 78721536 -73815723 + HAL1-3A_ME LINE L1 1956 2011 -847 3 1185 526 139 9 18 chr5 78721548 78721658 -73815601 + (CATA)n Simple_repeat Simple_repeat 2 110 0 3 1185 357 24 0 0 chr5 78721697 78721739 -73815520 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1185 210 37 0 0 chr5 78723154 78723181 -73814078 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3 1185 335 114 0 0 chr5 78723296 78723340 -73813919 + L1_Mus1 LINE L1 6145 6188 -379 3 1185 1750 143 57 7 chr5 78723340 78723636 -73813623 + RLTR10E LTR ERVK 1 311 0 3 1185 2609 69 60 11 chr5 78723639 78724006 -73813253 + L1_Mus1 LINE L1 6183 6567 0 3 1185 186 362 42 30 chr5 78724101 78724266 -73812993 + L4 LINE RTE 753 919 -1110 3 1185 434 112 0 36 chr5 78724292 78724375 -73812884 - L1Md_F2 LINE L1 -1 6581 6502 3 1185 4418 243 69 17 chr5 78724410 78725626 -73811633 - Lx7 LINE L1 -29 7667 6389 3 1185 956 185 88 13 chr5 78725964 78726274 -73810985 + Lx5 LINE L1 911 1250 -6478 3 1185 7850 192 25 4 chr5 78726272 78726524 -73810735 + Lx5 LINE L1 4237 4505 -1372 3 1185 2697 146 16 0 chr5 78726524 78726970 -73810289 + Lx LINE L1 6194 6646 -8 3 1185 7850 207 45 8 chr5 78726970 78729248 -73808011 + Lx5 LINE L1 4506 6875 -175 3 1185 8916 200 43 21 chr5 78729242 78731478 -73805781 - L1_Mur3 LINE L1 -246 5634 3348 3 1185 1444 185 89 75 chr5 78731517 78731553 -73805706 - L1_Mur3 LINE L1 -3626 2254 2219 3 1185 276 30 0 0 chr5 78731553 78731586 -73805673 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3 1185 1444 185 89 75 chr5 78731586 78731720 -73805539 - L1_Mur3 LINE L1 -3662 2218 2078 3 1185 282 95 0 0 chr5 78731720 78731762 -73805497 + (TGG)n Simple_repeat Simple_repeat 3 44 0 3 1185 1444 185 89 75 chr5 78731762 78732082 -73805177 - L1_Mur3 LINE L1 -3803 2077 1757 3 1185 336 48 0 0 chr5 78732083 78732125 -73805134 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1185 804 253 43 8 chr5 78732126 78732413 -73804846 - Lx2B LINE L1 -10 6990 6587 3 1185 339 310 64 6 chr5 78732482 78732654 -73804605 - L1_Mur3 LINE L1 -7512 216 35 3 1185 337 304 100 46 chr5 78733197 78733548 -73803711 - L1MD LINE L1 -2527 3619 3250 3 1185 852 299 27 8 chr5 78733569 78733829 -73803430 - MTD LTR MaLR -39 380 116 3 1185 265 326 22 28 chr5 78733913 78734036 -73803223 - MTD LTR MaLR -286 133 9 3 1185 421 307 164 67 chr5 78734070 78734412 -73802847 - MTEa LTR MaLR 0 379 5 3 1185 25 51 0 0 chr5 78734703 78734742 -73802517 + AT_rich Low_complexity Low_complexity 1 39 0 3 1185 303 266 78 8 chr5 78734742 78734871 -73802388 + L1MA9 LINE L1 5804 5941 -359 3 1185 376 257 50 60 chr5 78734955 78735154 -73802105 + L1MA9 LINE L1 5937 6133 -179 3 1185 462 36 0 0 chr5 78735414 78735470 -73801789 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 1185 991 205 33 46 chr5 78735474 78735714 -73801545 - Lx9 LINE L1 -179 7465 7229 3 1185 376 362 82 45 chr5 78736991 78737234 -73800025 - MLT1F2 LTR MaLR -4 556 305 3 1185 296 362 28 21 chr5 78737365 78737506 -73799753 - ID_B1 SINE B4 -2 222 81 3 1185 531 0 0 0 chr5 78737570 78737629 -73799630 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 3 1185 814 300 68 57 chr5 78737629 78737982 -73799277 - MTEa LTR MaLR -20 359 3 3 1185 11052 91 12 29 chr5 78738107 78739875 -73797384 - Lx3_Mus LINE L1 -1039 5970 4240 3 1185 5771 84 23 21 chr5 78739875 78740697 -73796562 + Lx3_Mus LINE L1 6186 7009 0 3 1185 568 260 35 155 chr5 78740709 78740909 -73796350 - B3 SINE B2 -34 182 6 3 1185 735 207 33 0 chr5 78741504 78741654 -73795605 - Lx5 LINE L1 -673 6377 6223 3 1185 2171 142 14 1 chr5 78741644 78742010 -73795249 - Lx5 LINE L1 -1047 6003 5662 3 1185 180 0 0 0 chr5 78742670 78742690 -73794569 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1185 1109 89 0 0 chr5 78742690 78742836 -73794423 - B1_Mus2 SINE Alu 0 147 2 3 1185 3137 62 5 0 chr5 78743018 78743424 -73793835 + L1_Mus2 LINE L1 6159 6566 0 3 1185 273 57 0 0 chr5 78744454 78744489 -73792770 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1185 2151 57 0 7 chr5 78744882 78745165 -73792094 + L1Md_F2 LINE L1 6302 6582 0 3 1185 6613 54 0 57 chr5 78745572 78745866 -73791393 + L1Md_F2 LINE L1 4728 5021 -862 3 1185 5962 8 1 0 chr5 78745866 78746533 -73790726 + L1Md_T LINE L1 5915 6582 0 3 1185 6613 54 0 57 chr5 78746533 78747149 -73790110 + L1Md_F2 LINE L1 5022 5586 -297 3 1185 7850 51 9 12 chr5 78747149 78748148 -73789111 + L1Md_F2 LINE L1 5587 6582 0 3 1185 303 93 0 0 chr5 78748387 78748430 -73788829 + (T)n Simple_repeat Simple_repeat 1 43 0 3 1185 3855 54 18 6 chr5 78748445 78748950 -73788309 + L1Md_F3 LINE L1 6074 6584 0 3 1185 3551 59 21 19 chr5 78748959 78749440 -73787819 + L1Md_F2 LINE L1 6086 6567 -15 3 1185 187 183 45 15 chr5 78749819 78749952 -73787307 + (TA)n Simple_repeat Simple_repeat 2 138 0 3 1185 426 169 10 10 chr5 78751672 78751768 -73785491 - Lx3C LINE L1 -10 6966 6871 3 1185 1866 88 15 0 chr5 78751995 78752258 -73785001 - L1_Mus3 LINE L1 -295 6343 6077 3 1185 1261 136 10 0 chr5 78752258 78752464 -73784795 + L1_Mus3 LINE L1 6426 6633 -5 3 1185 545 350 70 51 chr5 78753766 78754121 -73783138 - ORR1D2 LTR MaLR 0 370 9 3 1185 318 317 92 40 chr5 78754164 78754338 -73782921 - B3A SINE B2 -5 193 11 3 1185 470 294 152 18 chr5 78754587 78754958 -73782301 + LTR80B LTR ERVL 144 579 -4 3 1185 4086 196 27 81 chr5 78755704 78756746 -73780513 + Lx2B LINE L1 6015 7000 0 3 1185 364 239 14 39 chr5 78757011 78757129 -73780130 + L1M2 LINE L1 5662 5779 -404 3 1185 386 343 52 0 chr5 78757320 78757454 -73779805 + B3 SINE B2 66 206 -10 3 1185 2312 99 9 0 chr5 78757568 78757892 -73779367 + ORR1A2 LTR MaLR 1 327 0 3 1185 25 41 0 20 chr5 78757941 78757976 -73779283 + AT_rich Low_complexity Low_complexity 1 35 0 3 1185 589 104 0 45 chr5 78757976 78758087 -73779172 + Lx LINE L1 6542 6647 -7 3 1185 25 41 0 20 chr5 78758087 78758101 -73779158 + AT_rich Low_complexity Low_complexity 1 14 0 3 1185 23 86 0 0 chr5 78758225 78758283 -73778976 + AT_rich Low_complexity Low_complexity 1 58 0 3 1185 724 149 0 75 chr5 78758363 78758523 -73778736 - L1Md_F3 LINE L1 -1 6583 6436 3 1185 1820 100 52 4 chr5 78758522 78758794 -73778465 - L1_Mus2 LINE L1 -6 6560 6276 3 1185 456 136 0 90 chr5 78758794 78758883 -73778376 + L1_Mus2 LINE L1 6301 6381 -185 3 1185 860 319 113 34 chr5 78758994 78759550 -73777709 - Lx8 LINE L1 -788 6685 6086 3 1185 4336 20 2 0 chr5 78759766 78760258 -73777001 - MT2_Mm LTR ERVL 0 493 1 3 1185 314 0 0 0 chr5 78760258 78760296 -73776963 - MERVL-int LTR ERVL 0 5485 5448 3 1185 392 167 46 35 chr5 78760296 78760383 -73776876 - ORR1A3-int LTR MaLR -1323 640 553 3 1185 47223 16 6 0 chr5 78760383 78765709 -73771550 - MERVL-int LTR ERVL -125 5360 1 3 1185 2978 26 3 0 chr5 78765709 78766054 -73771205 - ORR1A0 LTR MaLR 0 346 1 3 1185 557 196 35 40 chr5 78766321 78766457 -73770802 - Lx9 LINE L1 -20 7624 7484 3 1185 5166 106 44 3 chr5 78766457 78767223 -73770036 + Lx3A LINE L1 6178 6975 -6 3 1185 557 196 35 40 chr5 78767223 78767288 -73769971 - Lx9 LINE L1 -161 7483 7424 3 1185 243 261 0 0 chr5 78767291 78767356 -73769903 + Lx9 LINE L1 6860 6924 -720 3 1185 4119 185 33 60 chr5 78767356 78768193 -73769066 + RMER12 LTR ERVK 1 836 -486 3 1185 459 0 0 0 chr5 78768193 78768244 -73769015 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1185 4119 185 33 60 chr5 78768244 78768321 -73768938 + RMER12 LTR ERVK 837 890 -432 3 1185 414 0 0 0 chr5 78768321 78768367 -73768892 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1185 24 0 0 0 chr5 78768370 78768394 -73768865 + AT_rich Low_complexity Low_complexity 1 24 0 3 1185 261 146 0 0 chr5 78770531 78770579 -73766680 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1185 187 231 168 44 chr5 78772188 78772301 -73764958 - MIR3 SINE MIR -37 171 45 3 1185 405 0 0 0 chr5 78772679 78772724 -73764535 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 148 336 359 79 25 chr5 78774238 78774441 -73762818 - B3A SINE B2 -1 215 2 3 1186 438 293 19 6 chr5 78774859 78775017 -73762242 - Lx6 LINE L1 -13 7447 7288 3 1186 399 300 19 0 chr5 78775051 78775176 -73762083 - MIRc SINE MIR -70 198 62 3 1186 270 0 0 0 chr5 78775388 78775418 -73761841 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1186 197 373 0 12 chr5 78776547 78776631 -73760628 + MIR3 SINE MIR 109 191 -17 3 1186 532 307 82 21 chr5 78777870 78778113 -73759146 - MER2 DNA MER2_type -1 344 87 3 1186 1248 60 0 0 chr5 78778165 78778316 -73758943 + L1Md_F2 LINE L1 5436 5586 -297 3 1186 7647 68 1 15 chr5 78778317 78779325 -73757934 + L1Md_F2 LINE L1 5588 6581 -1 3 1186 315 314 28 19 chr5 78779412 78779519 -73757740 + MLT1J1 LTR MaLR 1 108 -336 3 1186 746 113 187 0 chr5 78779519 78779669 -73757590 + Lx2 LINE L1 6820 6997 0 3 1186 219 103 0 0 chr5 78779694 78779733 -73757526 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1186 226 30 0 29 chr5 78781447 78781475 -73755784 - L1_Mus2 LINE L1 -599 5967 5940 3 1186 4493 69 5 32 chr5 78781475 78782091 -73755168 + L1_Mus2 LINE L1 5968 6566 0 3 1186 237 327 69 10 chr5 78782231 78782333 -73754926 - Lx8 LINE L1 -144 7329 7222 3 1186 3604 158 50 5 chr5 78782663 78783280 -73753979 + Lx4A LINE L1 6410 7054 -4 3 1186 353 300 112 53 chr5 78783498 78783854 -73753405 + Zaphod2 DNA Tip100 702 1078 -2446 3 1186 1527 75 19 0 chr5 78784890 78785102 -73752157 - Lx3_Mus LINE L1 0 7009 6794 3 1186 245 281 212 40 chr5 78785478 78785879 -73751380 + Zaphod2 DNA Tip100 2324 2793 -731 3 1186 667 68 0 0 chr5 78785987 78786075 -73751184 + B1_Mus2 SINE Alu 59 146 -1 3 1186 992 67 0 0 chr5 78786183 78786318 -73750941 + L1Md_F2 LINE L1 6435 6569 -13 3 1186 325 358 68 44 chr5 78786702 78786953 -73750306 + L3 LINE CR1 3428 3684 -805 3 1186 450 20 0 0 chr5 78787182 78787232 -73750027 + L1Md_T LINE L1 5537 5586 -297 3 1186 8441 30 0 0 chr5 78787232 78788228 -73749031 + L1Md_T LINE L1 5587 6582 0 3 1186 2278 131 81 0 chr5 78788310 78788692 -73748567 + Lx2 LINE L1 6575 6987 -10 3 1186 210 91 0 0 chr5 78789168 78789201 -73748058 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1186 401 194 73 31 chr5 78789688 78789784 -73747475 + MIRc SINE MIR 137 236 -32 3 1186 201 280 94 78 chr5 78790178 78790306 -73746953 + MIRb SINE MIR 99 228 -40 3 1186 615 14 0 0 chr5 78790379 78790451 -73746808 + (GA)n Simple_repeat Simple_repeat 1 72 0 3 1186 2753 173 55 48 chr5 78790580 78791145 -73746114 - RMER4B LTR ERVK 0 585 17 3 1186 525 32 0 0 chr5 78791385 78791448 -73745811 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 4 1186 276 250 17 0 chr5 78791451 78791511 -73745748 + CT-rich Low_complexity Low_complexity 2 62 0 4 1186 1091 124 6 0 chr5 78791513 78791690 -73745569 + (TTC)n Simple_repeat Simple_repeat 1 178 0 4 1186 234 341 81 7 chr5 78792142 78792278 -73744981 - LTR52 LTR ERVL -265 156 11 4 1186 7042 128 45 11 chr5 78793719 78795706 -73741553 + L1_Mus4 LINE L1 4599 6629 -7 4 1186 264 137 0 0 chr5 78796143 78796194 -73741065 + (TC)n Simple_repeat Simple_repeat 1 51 0 4 1186 354 61 0 0 chr5 78796194 78796243 -73741016 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1186 459 294 93 56 chr5 78796256 78796418 -73740841 - B3 SINE B2 -27 168 1 4 1186 360 274 37 9 chr5 78796475 78796582 -73740677 - PB1D9 SINE Alu -7 113 4 4 1186 29 78 0 0 chr5 78797967 78798031 -73739228 + AT_rich Low_complexity Low_complexity 1 64 0 4 1186 925 341 93 12 chr5 78798231 78798792 -73738467 - Lx8 LINE L1 -447 7026 6421 4 1186 2955 37 3 8 chr5 78798794 78799150 -73738109 - IAPEY2_LTR LTR ERVK -3 354 1 4 1186 1431 74 0 0 chr5 78800440 78800630 -73736629 - L1_Mus1 LINE L1 0 6567 6378 4 1186 23 33 0 0 chr5 78800665 78800695 -73736564 + AT_rich Low_complexity Low_complexity 1 30 0 4 1186 296 212 131 14 chr5 78800895 78800995 -73736264 + PB1D10 SINE Alu 27 134 -15 4 1186 666 175 0 0 chr5 78801604 78801781 -73735478 + CT-rich Low_complexity Low_complexity 2 178 0 4 1186 654 287 55 6 chr5 78801809 78801991 -73735268 - B3 SINE B2 -25 191 1 4 1186 516 195 0 0 chr5 78802016 78802190 -73735069 + CT-rich Low_complexity Low_complexity 1 174 0 4 1186 438 281 36 47 chr5 78802232 78802384 -73734875 + B1F1 SINE Alu 2 149 0 4 1186 22 56 0 0 chr5 78803778 78803814 -73733445 + AT_rich Low_complexity Low_complexity 1 36 0 4 1186 192 336 129 26 chr5 78804086 78804202 -73733057 - MIR3 SINE MIR -70 138 11 4 1186 430 148 9 69 chr5 78804575 78804691 -73732568 - Lx9 LINE L1 0 7644 7536 4 1186 374 0 22 0 chr5 78804701 78804747 -73732512 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1186 3518 94 2 0 chr5 78804747 78805217 -73732042 - L1_Mus4 LINE L1 -319 6317 5847 4 1186 2922 262 39 15 chr5 78805218 78806021 -73731238 - Lx9 LINE L1 -170 7474 6653 4 1186 722 133 7 20 chr5 78807017 78807170 -73730089 + (TA)n Simple_repeat Simple_repeat 2 152 0 4 1186 267 203 0 0 chr5 78807189 78807263 -73729996 + (TA)n Simple_repeat Simple_repeat 1 74 0 4 1186 2303 11 0 0 chr5 78808168 78808430 -73728829 + L1Md_A LINE L1 6321 6582 0 4 1186 4747 164 7 36 chr5 78808839 78809698 -73727561 + Lx4A LINE L1 6217 7050 -8 4 1186 307 362 98 25 chr5 78809842 78810077 -73727182 + L2c LINE L2 2975 3226 -161 4 1186 2879 24 3 0 chr5 78812090 78812424 -73724835 + IAPLTR1a_Mm LTR ERVK 1 335 -2 4 1186 4854 52 24 39 chr5 78812424 78813091 -73724168 + IAPEz-int LTR ERVK 6 662 -5819 4 1186 442 66 0 32 chr5 78813091 78813154 -73724105 + IAPEz-int LTR ERVK 1359 1419 -5062 4 1186 1846 111 4 4 chr5 78813143 78813405 -73723854 + IAPEz-int LTR ERVK 2236 2497 -5183 4 1186 932 73 24 0 chr5 78813402 78813525 -73723734 + IAPEz-int LTR ERVK 4785 4910 -2770 4 1186 21205 11 2 0 chr5 78813527 78815880 -73721379 + IAPEz-int LTR ERVK 4123 6481 0 4 1186 2857 27 3 0 chr5 78815880 78816214 -73721045 + IAPLTR1a_Mm LTR ERVK 1 335 -2 4 1186 747 242 44 15 chr5 78816676 78816881 -73720378 + Lx8 LINE L1 6322 6532 -941 4 1186 1635 291 89 19 chr5 78816887 78817469 -73719790 + Lx8 LINE L1 6730 7352 -121 4 1186 225 94 0 0 chr5 78817986 78818018 -73719241 + (TA)n Simple_repeat Simple_repeat 1 32 0 4 1186 224 59 0 29 chr5 78819200 78819235 -73718024 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4 1186 318 26 0 0 chr5 78820148 78820187 -73717072 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1186 227 152 22 0 chr5 78820202 78820248 -73717011 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 4 1186 22 56 0 0 chr5 78820819 78820855 -73716404 + AT_rich Low_complexity Low_complexity 1 36 0 4 1186 1131 0 22 0 chr5 78820913 78821052 -73716207 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 4 1186 287 187 55 18 chr5 78823125 78823234 -73714025 + (TATAA)n Simple_repeat Simple_repeat 3 115 0 4 1186 333 0 0 0 chr5 78824075 78824112 -73713147 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1186 396 0 0 0 chr5 78824112 78824155 -73713104 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1186 240 35 0 0 chr5 78824155 78824183 -73713076 + (GA)n Simple_repeat Simple_repeat 2 30 0 4 1186 601 217 28 101 chr5 78824416 78824504 -73712755 + Lx6 LINE L1 6678 6750 -710 4 1186 243 61 0 0 chr5 78824504 78824537 -73712722 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 4 1186 601 217 28 101 chr5 78824537 78824627 -73712632 + Lx6 LINE L1 6751 6843 -617 4 1186 1808 268 60 10 chr5 78824650 78825137 -73712122 + Lx6 LINE L1 6939 7449 -11 4 1186 1435 205 81 182 chr5 78826123 78826743 -73710516 - RLTR31B_Mm LTR ERVK 0 557 1 4 1186 250 58 39 0 chr5 78827149 78827201 -73710058 - L1Md_F3 LINE L1 0 6584 6531 4 1186 474 186 39 58 chr5 78827470 78827573 -73709686 - PB1D9 SINE Alu -16 104 4 4 1186 551 293 80 65 chr5 78828944 78829283 -73707976 - RLTR15 LTR ERVK -15 344 1 4 1186 332 180 16 0 chr5 78829625 78829686 -73707573 - RLTR15 LTR ERVK -297 62 1 4 1186 600 272 120 112 chr5 78832122 78832498 -73704761 + MTE2a LTR MaLR 1 379 0 4 1186 1265 207 131 48 chr5 78833033 78833408 -73703851 + MusHAL1 LINE L1 517 923 -2693 4 1186 964 107 7 0 chr5 78833403 78833552 -73703707 + MusHAL1 LINE L1 1940 2089 -1526 4 1186 1024 289 32 32 chr5 78833550 78833858 -73703401 + Lx7 LINE L1 6831 7138 -558 4 1186 2104 244 24 10 chr5 78833860 78834352 -73702907 - RMER20A LTR ERVK -7 509 11 4 1186 955 272 45 12 chr5 78834362 78834693 -73702566 + Lx7 LINE L1 7144 7485 -211 4 1186 180 0 0 0 chr5 78834855 78834875 -73702384 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 1186 773 120 15 0 chr5 78835656 78835789 -73701470 + L1_Mus3 LINE L1 6497 6631 -7 4 1186 519 17 0 0 chr5 78835793 78835853 -73701406 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 4 1186 11954 111 7 22 chr5 78836109 78838029 -73699230 + L1_Mm LINE L1 2711 4602 -1281 4 1186 7432 73 8 1 chr5 78838041 78839015 -73698244 + L1_Mus1 LINE L1 5587 6567 0 4 1186 1124 154 0 89 chr5 78839486 78839700 -73697559 + MTC LTR MaLR 219 413 -8 4 1186 25 51 0 0 chr5 78840542 78840581 -73696678 + AT_rich Low_complexity Low_complexity 1 39 0 4 1186 35038 48 1 3 chr5 78841666 78846908 -73690351 + L1Md_T LINE L1 288 5589 -297 4 1186 8502 30 0 0 chr5 78846908 78847904 -73689355 + L1Md_T LINE L1 5590 6585 0 4 1186 246 326 132 0 chr5 78849049 78849178 -73688081 - L4 LINE RTE -484 1545 1400 4 1186 2972 81 2 0 chr5 78849703 78850098 -73687161 - MTB LTR MaLR 0 400 5 4 1186 432 294 133 0 chr5 78850239 78850419 -73686840 + L1M2 LINE L1 5563 5766 -534 4 1186 303 28 0 0 chr5 78850420 78850456 -73686803 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1186 1928 225 10 15 chr5 78850469 78850760 -73686499 - MTC LTR MaLR -13 408 115 4 1186 1531 51 0 0 chr5 78850760 78850955 -73686304 + L1_Mus2 LINE L1 6369 6563 -3 4 1186 933 97 0 0 chr5 78850955 78851089 -73686170 + (GAGAA)n Simple_repeat Simple_repeat 4 137 0 4 1186 1928 225 10 15 chr5 78851089 78851206 -73686053 - MTC LTR MaLR -307 114 2 4 1186 4970 162 32 2 chr5 78851470 78852334 -73684925 + Lx4A LINE L1 6168 7057 -1 4 1186 1075 193 31 18 chr5 78852985 78853207 -73684052 - URR1A DNA MER1_type -1 225 1 4 1186 391 354 26 10 chr5 78853490 78853684 -73683575 - LTR82A LTR ERVL -511 361 165 4 1186 315 104 0 0 chr5 78854121 78854169 -73683090 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1186 411 98 0 0 chr5 78854443 78854504 -73682755 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1186 24 32 0 0 chr5 78854569 78854600 -73682659 + AT_rich Low_complexity Low_complexity 1 31 0 4 1186 30 27 0 0 chr5 78854655 78854692 -73682567 + AT_rich Low_complexity Low_complexity 1 37 0 4 1186 182 174 22 0 chr5 78854965 78855011 -73682248 + CT-rich Low_complexity Low_complexity 2 48 0 4 1186 262 350 62 11 chr5 78855074 78855253 -73682006 - L1MA5 LINE L1 -366 5934 5747 4 1186 527 313 20 13 chr5 78855332 78855484 -73681775 - RSINE1 SINE B4 -8 157 5 4 1186 234 0 0 0 chr5 78855865 78855891 -73681368 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1186 3415 30 2 0 chr5 78855956 78856351 -73680908 - MTA_Mm LTR MaLR 0 396 1 4 1186 964 286 102 13 chr5 78857353 78857725 -73679534 + MTD LTR MaLR 1 405 -14 4 1186 24 53 0 0 chr5 78858210 78858248 -73679011 + AT_rich Low_complexity Low_complexity 1 38 0 4 1186 3599 91 24 4 chr5 78858416 78858923 -73678336 + Lx3B LINE L1 6138 6654 -319 4 1186 659 243 109 64 chr5 78859034 78859127 -73678132 - B3 SINE B2 -1 215 107 4 1186 2229 120 3 6 chr5 78859127 78859453 -73677806 - ORR1A2 LTR MaLR 0 327 3 4 1186 659 243 109 64 chr5 78859453 78859561 -73677698 - B3 SINE B2 -110 106 5 4 1186 280 327 18 0 chr5 78859597 78859710 -73677549 + MER5A1 DNA MER1_type 47 161 -5 4 1186 22 0 0 0 chr5 78860863 78860885 -73676374 + AT_rich Low_complexity Low_complexity 1 22 0 4 1186 21 0 0 0 chr5 78861127 78861148 -73676111 + AT_rich Low_complexity Low_complexity 1 21 0 4 1186 491 0 17 0 chr5 78861293 78861352 -73675907 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 1186 186 391 0 52 chr5 78862358 78862455 -73674804 + L3 LINE CR1 4386 4477 -12 4 1186 958 286 78 18 chr5 78862969 78863304 -73673955 - ORR1D2 LTR MaLR -8 362 8 4 1186 21 57 0 0 chr5 78864004 78864039 -73673220 + AT_rich Low_complexity Low_complexity 1 35 0 4 1186 1136 247 77 35 chr5 78864457 78864859 -73672400 - MTD LTR MaLR 0 419 1 4 1186 228 411 45 10 chr5 78865024 78865223 -73672036 + Charlie8 DNA MER1_type 75 280 -2148 4 1186 20529 124 40 20 chr5 78865493 78870320 -73666939 + L1Md_F2 LINE L1 218 5578 -299 4 1186 7472 67 16 2 chr5 78870322 78871291 -73665968 + L1Md_F2 LINE L1 5587 6568 -14 4 1186 315 0 0 0 chr5 78872654 78872689 -73664570 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1186 223 177 16 16 chr5 78872818 78872881 -73664378 + CT-rich Low_complexity Low_complexity 3 65 0 4 1186 233 243 84 14 chr5 78873353 78873424 -73663835 + RMER5 LTR ERV1 28 103 -431 4 1186 24 53 0 0 chr5 78875511 78875549 -73661710 + AT_rich Low_complexity Low_complexity 1 38 0 4 1186 752 125 8 0 chr5 78875599 78875727 -73661532 + (TA)n Simple_repeat Simple_repeat 2 130 0 4 1186 2262 283 92 45 chr5 78875733 78877205 -73660054 + L1MA4 LINE L1 3617 5158 -985 4 1186 26 50 0 0 chr5 78877246 78877286 -73659973 + AT_rich Low_complexity Low_complexity 1 40 0 5 1186 213 151 39 88 chr5 78877407 78877509 -73659750 + (TTATA)n Simple_repeat Simple_repeat 3 99 0 5 1186 546 315 88 16 chr5 78877509 78877987 -73659272 + L1MA4 LINE L1 5380 5924 -376 4 1186 233 245 111 50 chr5 78878007 78878106 -73659153 + PB1D10 SINE Alu 5 109 -8 5 1186 203 136 45 0 chr5 78878125 78878169 -73659090 + (CACAA)n Simple_repeat Simple_repeat 5 50 0 5 1186 293 277 168 5 chr5 78878173 78878376 -73658883 + L1MA4 LINE L1 5946 6181 -119 4 1186 405 0 0 0 chr5 78878381 78878426 -73658833 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1186 423 0 0 0 chr5 78878426 78878472 -73658787 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1186 492 276 84 31 chr5 78878549 78878682 -73658577 - B3 SINE B2 -5 211 80 5 1186 1132 55 0 41 chr5 78878682 78878852 -73658407 + L1Md_F2 LINE L1 6420 6582 0 5 1186 492 276 84 31 chr5 78878852 78878909 -73658350 - B3 SINE B2 -137 79 12 5 1186 1914 292 25 8 chr5 78878919 78879437 -73657822 + Lx6 LINE L1 6924 7450 -10 5 1186 354 318 46 97 chr5 78879634 78879850 -73657409 + MLT1K LTR MaLR 378 582 -13 5 1186 223 206 15 45 chr5 78881771 78881837 -73655422 + L3b LINE CR1 139 202 -280 5 1186 191 345 11 35 chr5 78882194 78882281 -73654978 - MIRc SINE MIR -151 117 33 5 1186 1066 90 14 0 chr5 78882999 78883144 -73654115 - B1_Mus1 SINE Alu 0 148 2 5 1186 919 208 72 17 chr5 78883617 78883852 -73653407 - RMER16 LTR ERVK 0 533 286 5 1186 310 250 219 7 chr5 78883840 78883977 -73653282 - RMER16 LTR ERVK -154 379 214 5 1186 235 225 26 66 chr5 78883947 78884023 -73653236 - RMER16 LTR ERVK -460 73 1 5 1186 321 26 0 0 chr5 78884023 78884061 -73653198 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1186 267 31 0 0 chr5 78884469 78884501 -73652758 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1186 324 0 0 0 chr5 78884529 78884565 -73652694 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 1186 1954 80 14 7 chr5 78884762 78885038 -73652221 + L1Md_F2 LINE L1 6304 6581 -1 5 1186 1965 303 78 26 chr5 78885038 78886385 -73650874 - L1_Mur3 LINE L1 -1297 4583 3167 5 1186 24 0 0 0 chr5 78886538 78886562 -73650697 + AT_rich Low_complexity Low_complexity 1 24 0 5 1186 317 93 19 0 chr5 78886813 78886867 -73650392 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1186 2042 226 68 2 chr5 78886952 78887426 -73649833 - RMER1B Other Other -1 1065 561 5 1186 189 0 0 0 chr5 78887640 78887661 -73649598 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1186 237 204 0 0 chr5 78887666 78887710 -73649549 - B1F SINE Alu -20 129 86 5 1186 288 330 102 19 chr5 78887955 78888063 -73649196 + RSINE1 SINE B4 11 127 -38 5 1186 203 204 0 22 chr5 78889795 78889840 -73647419 + T-rich Low_complexity Low_complexity 2 45 0 5 1186 1843 210 101 36 chr5 78889864 78890083 -73647176 + RLTR11A LTR ERVK 3 256 -272 5 1186 783 32 0 0 chr5 78890083 78890177 -73647082 + (GAA)n Simple_repeat Simple_repeat 2 95 0 5 1186 1843 210 101 36 chr5 78890177 78890451 -73646808 + RLTR11A LTR ERVK 257 528 0 5 1186 257 198 35 11 chr5 78890452 78890539 -73646720 - Lx9 LINE L1 -29 7615 7527 5 1186 200 59 0 29 chr5 78890659 78890694 -73646565 + (TTA)n Simple_repeat Simple_repeat 2 35 0 5 1186 5386 91 22 3 chr5 78890833 78891597 -73645662 - Lx3_Mus LINE L1 0 7009 6231 5 1186 561 316 123 47 chr5 78891732 78892126 -73645133 + MLT2B3 LTR ERVL 163 673 -43 5 1186 823 97 32 0 chr5 78892126 78892280 -73644979 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 5 1186 555 287 98 25 chr5 78892280 78892345 -73644914 + MLT2B3 LTR ERVL 644 710 -7 5 1186 31 58 0 0 chr5 78892545 78892597 -73644662 + AT_rich Low_complexity Low_complexity 1 52 0 5 1186 24 0 0 0 chr5 78892664 78892688 -73644571 + AT_rich Low_complexity Low_complexity 1 24 0 5 1186 37209 35 11 17 chr5 78892818 78894482 -73642777 - L1Md_T LINE L1 0 6582 4917 5 1186 231 183 46 77 chr5 78894482 78894547 -73642712 + RMER20A LTR ERVK 186 248 -268 5 1186 37209 35 11 17 chr5 78894547 78898799 -73638460 - L1Md_T LINE L1 0 4916 658 5 1186 21 57 0 0 chr5 78899400 78899435 -73637824 + AT_rich Low_complexity Low_complexity 1 35 0 5 1186 334 250 122 22 chr5 78899801 78899940 -73637319 - MLT2D LTR ERVL -250 164 12 5 1186 427 379 49 47 chr5 78899950 78900401 -73636858 + L1MC LINE L1 4735 5186 -960 5 1186 294 98 0 0 chr5 78900488 78900539 -73636720 + (CATA)n Simple_repeat Simple_repeat 2 52 0 5 1186 227 350 41 18 chr5 78900618 78900839 -73636420 + L1MC3 LINE L1 6420 6645 -1140 5 1186 436 119 48 0 chr5 78900839 78900923 -73636336 + (CATATA)n Simple_repeat Simple_repeat 1 88 0 5 1186 236 323 0 0 chr5 78900978 78901043 -73636216 + L1MC3 LINE L1 7137 7201 -584 5 1186 1083 79 0 7 chr5 78901180 78901321 -73635938 - B1_Mus1 SINE Alu -8 140 1 5 1186 600 293 40 59 chr5 78901447 78901719 -73635540 - RMER21B LTR ERV1 -442 400 134 5 1186 305 368 42 67 chr5 78902068 78902424 -73634835 - L3 LINE CR1 -2188 2301 1955 5 148 26652 25 0 0 chr5 78904175 78907327 -73629932 + L1Md_T LINE L1 2434 5586 -297 5 1187 8171 35 12 2 chr5 78907328 78908313 -73628946 + L1Md_T LINE L1 5588 6582 0 5 1187 234 0 0 0 chr5 78908501 78908527 -73628732 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 5 1187 262 375 17 51 chr5 78908705 78908823 -73628436 - B4A SINE B4 -177 115 2 5 1187 216 163 0 0 chr5 78908826 78908869 -73628390 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1187 860 144 0 13 chr5 78909852 78910007 -73627252 + GA-rich Low_complexity Low_complexity 2 154 0 5 1187 202 206 16 16 chr5 78910022 78910086 -73627173 + GA-rich Low_complexity Low_complexity 4 67 0 5 1187 328 303 211 11 chr5 78911487 78911667 -73625592 - B4A SINE B4 -6 286 71 5 1187 282 29 0 0 chr5 78912438 78912473 -73624786 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1187 369 364 132 33 chr5 78912947 78913230 -73624029 - L1M4b LINE L1 -5566 1768 1448 5 1187 1883 121 3 3 chr5 78913230 78913529 -73623730 + L1_Mus4 LINE L1 6334 6632 -4 5 1187 369 364 132 33 chr5 78913529 78913736 -73623523 - L1M4b LINE L1 -5887 1447 1229 5 1187 384 350 77 83 chr5 78913800 78913956 -73623303 + RSINE1 SINE B4 11 165 0 5 1187 261 0 0 0 chr5 78914665 78914694 -73622565 + (TA)n Simple_repeat Simple_repeat 2 30 0 5 1187 297 0 0 0 chr5 78914827 78914860 -73622399 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5 1187 1079 158 78 20 chr5 78916900 78917146 -73620113 - ORR1C2 LTR MaLR 0 384 65 5 1187 293 346 73 12 chr5 78917148 78917312 -73619947 + RMER15-int LTR ERVL 378 551 -4448 5 1187 1241 258 188 5 chr5 78917406 78917841 -73619418 + RMER15-int LTR ERVL 769 1283 -3716 5 1187 2989 60 3 0 chr5 78917848 78918254 -73619005 + L1Md_T LINE L1 6191 6582 0 5 1187 3071 276 49 21 chr5 78918287 78919182 -73618077 + RMER15-int LTR ERVL 1467 2386 -2613 5 1187 1730 259 106 31 chr5 78919199 78919745 -73617514 + RMER15-int LTR ERVL 4051 4637 -362 5 1187 261 57 0 0 chr5 78919745 78919780 -73617479 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1187 744 261 64 11 chr5 78919905 78920188 -73617071 - L1M2 LINE L1 -2393 3750 3453 5 1187 266 208 0 0 chr5 78920186 78920239 -73617020 - L1_Rod LINE L1 -4297 1550 1498 5 1187 1305 271 44 53 chr5 78920248 78920704 -73616555 + RLTR19C LTR ERVK 18 469 -37 5 1187 2900 241 46 28 chr5 78920744 78921389 -73615870 - L1_Rod LINE L1 -4355 1492 837 5 1187 216 24 73 0 chr5 78921389 78921430 -73615829 + (TTG)n Simple_repeat Simple_repeat 2 45 0 5 1187 2900 260 32 30 chr5 78921430 78921812 -73615447 - L1_Rod LINE L1 -6772 836 452 5 1187 678 309 33 29 chr5 78921826 78922099 -73615160 - L1_Rod LINE L1 -6850 322 49 5 1187 228 67 0 0 chr5 78922591 78922621 -73614638 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 1187 279 0 0 0 chr5 78923063 78923094 -73614165 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1187 312 27 0 0 chr5 78923094 78923130 -73614129 + (TA)n Simple_repeat Simple_repeat 1 37 0 5 1187 217 308 0 0 chr5 78923177 78923229 -73614030 + (CAT)n Simple_repeat Simple_repeat 2 53 0 5 1187 536 269 78 0 chr5 78923229 78923422 -73613837 - L1_Rod LINE L1 -6562 610 403 5 1187 584 210 43 0 chr5 78923518 78923656 -73613603 + HAL1-2a_MD LINE L1 2348 2491 -533 5 1187 367 281 19 46 chr5 78924616 78924724 -73612535 - B1F SINE Alu -1 148 44 5 1187 399 226 22 7 chr5 78924756 78924894 -73612365 - Lx9 LINE L1 0 7644 7505 5 1187 249 33 0 0 chr5 78924897 78924927 -73612332 + (TTA)n Simple_repeat Simple_repeat 2 31 0 5 1187 1850 202 16 3 chr5 78924930 78925302 -73611957 - Lx4A LINE L1 -11 7047 6671 5 1187 2320 171 158 39 chr5 78925302 78926106 -73611153 + RMER19B LTR ERVK 3 902 0 5 1187 7019 163 84 76 chr5 78926107 78929112 -73608147 - Lx4A LINE L1 -381 6677 3891 5 1187 365 119 0 17 chr5 78929150 78929210 -73608049 + ORR1B1 LTR MaLR 184 242 -152 5 1187 344 105 18 0 chr5 78929210 78929267 -73607992 - Lx4A LINE L1 -1994 3883 3826 5 1187 2827 133 42 60 chr5 78929256 78929871 -73607388 - Lx4A LINE L1 -2452 3425 2822 5 1187 1681 161 9 146 chr5 78929863 78930304 -73606955 + L1_Mur2 LINE L1 1678 2060 -3817 5 1187 375 23 0 0 chr5 78930304 78930348 -73606911 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1187 1681 161 9 146 chr5 78930348 78930439 -73606820 + L1_Mur2 LINE L1 2061 2137 -3740 5 1187 186 103 0 0 chr5 78930448 78930477 -73606782 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1187 1577 188 65 3 chr5 78930678 78930987 -73606272 + ORR1B1 LTR MaLR 59 386 -8 5 1187 342 341 0 0 chr5 78931280 78931368 -73605891 - MER58A DNA MER1_type -126 98 11 5 1187 249 55 73 18 chr5 78932474 78932529 -73604730 + (CAAAA)n Simple_repeat Simple_repeat 2 59 0 5 1187 3110 155 44 30 chr5 78932962 78933572 -73603687 - Lx LINE L1 -2 6652 6034 5 1187 6920 158 42 7 chr5 78933573 78935112 -73602147 + Lx LINE L1 4438 6048 -606 5 1187 366 61 0 0 chr5 78935966 78936015 -73601244 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1187 285 343 28 19 chr5 78936244 78936351 -73600908 + RMER15 LTR ERVL 336 443 -132 5 1187 1071 316 32 17 chr5 78936497 78936842 -73600417 + MTE2b LTR MaLR 24 373 -6 5 1187 882 147 0 0 chr5 78936874 78937010 -73600249 + RLTR11B LTR ERVK 313 448 -5 5 1187 455 169 0 119 chr5 78937005 78937106 -73600153 - ORR1C2 LTR MaLR -295 89 1 5 1187 309 26 0 0 chr5 78938850 78938888 -73598371 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1187 5717 195 20 45 chr5 78939166 78940385 -73596874 - Lx5 LINE L1 -245 6805 5617 5 1187 3050 179 36 19 chr5 78940396 78941039 -73596220 + Lx5 LINE L1 4995 5654 -1396 5 1187 2149 247 51 85 chr5 78941304 78942043 -73595216 - RMER6D LTR ERVK -6 714 1 5 1187 2273 153 24 10 chr5 78942051 78942466 -73594793 - BGLII_Mus LTR ERVK 0 422 2 5 1187 197 310 35 35 chr5 78942883 78942970 -73594289 + L2b LINE L2 3289 3375 0 5 1187 1486 188 117 76 chr5 78943246 78943295 -73593964 - ORR1C2 LTR MaLR 0 384 344 5 1187 3195 131 23 6 chr5 78943295 78943811 -73593448 - Lx LINE L1 -2 6652 6128 5 1187 1486 188 117 76 chr5 78943811 78944130 -73593129 - ORR1C2 LTR MaLR -41 343 1 5 1187 279 0 0 0 chr5 78944287 78944318 -73592941 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 5 1187 210 318 11 54 chr5 78946335 78946428 -73590831 + L2c LINE L2 3241 3329 -58 6 1187 935 42 0 0 chr5 78947264 78947384 -73589875 + B1_Mus1 SINE Alu 27 146 -2 6 1187 222 116 0 0 chr5 78947384 78947427 -73589832 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 6 1187 22 35 0 0 chr5 78947428 78947457 -73589802 + AT_rich Low_complexity Low_complexity 1 29 0 6 1187 238 297 63 71 chr5 78947625 78947738 -73589521 + MIRc SINE MIR 37 150 -118 6 1187 340 61 0 0 chr5 78947738 78947787 -73589472 + L1Md_F2 LINE L1 6522 6570 -12 6 1187 238 297 63 71 chr5 78947787 78947800 -73589459 + MIRc SINE MIR 151 162 -106 6 1187 197 346 58 73 chr5 78948388 78948525 -73588734 + L2c LINE L2 3248 3382 -5 6 1187 1405 100 8 40 chr5 78949044 78949294 -73587965 - Lx LINE L1 -1 6653 6412 6 1187 1441 83 0 0 chr5 78949296 78949488 -73587771 + L1_Mus4 LINE L1 5614 5805 -831 6 1187 600 100 16 8 chr5 78949604 78949725 -73587534 + (TG)n Simple_repeat Simple_repeat 2 123 0 6 1187 536 332 72 29 chr5 78949752 78949960 -73587299 - B4A SINE B4 -8 284 68 6 1187 28 0 0 0 chr5 78950057 78950085 -73587174 + AT_rich Low_complexity Low_complexity 1 28 0 6 1187 26 30 0 0 chr5 78950101 78950134 -73587125 + AT_rich Low_complexity Low_complexity 1 33 0 6 1187 279 312 65 76 chr5 78950225 78950409 -73586850 + MLT1A1 LTR MaLR 28 209 -199 6 1187 520 252 7 29 chr5 78950875 78951014 -73586245 - Lx4B LINE L1 0 7058 6923 6 1187 465 34 0 0 chr5 78951046 78951105 -73586154 + (TA)n Simple_repeat Simple_repeat 2 60 0 6 1187 4822 113 14 4 chr5 78951105 78951808 -73585451 - L1_Mus3 LINE L1 -25 6613 5904 6 1187 281 370 50 40 chr5 78951812 78952012 -73585247 - MLT1E1 LTR MaLR -66 588 387 6 1187 1523 237 8 43 chr5 78952553 78952885 -73584374 + ORR1C1 LTR MaLR 1 320 -58 6 1187 528 78 0 0 chr5 78952885 78952962 -73584297 - L1_Mus2 LINE L1 -1 6565 6489 6 1187 1523 237 8 43 chr5 78952962 78953021 -73584238 + ORR1C1 LTR MaLR 321 378 0 6 1187 268 293 93 47 chr5 78953310 78953439 -73583820 + B1F1 SINE Alu 15 149 0 6 1187 354 116 0 0 chr5 78953443 78953512 -73583747 + Lx3A LINE L1 6895 6963 -18 6 1187 216 0 0 0 chr5 78953516 78953540 -73583719 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1187 390 91 0 0 chr5 78953625 78953680 -73583579 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1187 514 250 36 22 chr5 78954218 78954357 -73582902 + Lx9 LINE L1 6720 6860 -784 6 1187 772 257 124 0 chr5 78954711 78954952 -73582307 + Lx9 LINE L1 6467 6737 -907 6 1187 247 296 12 0 chr5 78955098 78955179 -73582080 - Lx7 LINE L1 -395 7301 7220 6 1187 1055 333 61 50 chr5 78955187 78955273 -73581986 + Lx7 LINE L1 6610 6692 -1004 6 1187 243 0 0 0 chr5 78955273 78955300 -73581959 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1187 1055 333 61 50 chr5 78955300 78955313 -73581946 + Lx7 LINE L1 6693 6704 -992 6 1187 189 107 0 0 chr5 78955313 78955341 -73581918 + (CAAAG)n Simple_repeat Simple_repeat 3 30 0 6 1187 1055 333 61 50 chr5 78955341 78955797 -73581462 + Lx7 LINE L1 6705 7172 -524 6 1187 314 159 0 73 chr5 78956475 78956543 -73580716 - Lx9 LINE L1 -709 6935 6873 6 1187 456 299 44 13 chr5 78956585 78956744 -73580515 - Lx6 LINE L1 -6 7454 7291 6 1187 437 256 16 8 chr5 78956739 78956861 -73580398 + Lx9 LINE L1 7313 7435 -209 6 1187 405 0 0 0 chr5 78956887 78956932 -73580327 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1187 350 16 81 0 chr5 78957724 78957786 -73579473 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 6 1187 206 314 100 0 chr5 78957801 78957871 -73579388 + L2a LINE L2 3060 3136 -290 6 1187 1152 232 91 3 chr5 78959084 78959434 -73577825 - Lx9 LINE L1 -2 7642 7262 6 1187 26 50 0 0 chr5 78959858 78959898 -73577361 + AT_rich Low_complexity Low_complexity 1 40 0 6 1187 804 186 169 5 chr5 78961109 78961298 -73575961 - URR1A DNA MER1_type 0 226 7 6 1187 22 35 0 0 chr5 78961705 78961734 -73575525 + AT_rich Low_complexity Low_complexity 1 29 0 6 1187 807 191 0 26 chr5 78962147 78962303 -73574956 + RLTR20A LTR ERVK 2 153 -388 6 1187 4516 164 5 2 chr5 78962388 78963200 -73574059 - L1_Mur2 LINE L1 -496 5381 4568 6 1187 953 156 6 0 chr5 78963197 78963376 -73573883 - MusHAL1 LINE L1 -449 2263 2084 6 1187 1784 103 60 7 chr5 78963376 78963660 -73573599 + Lx LINE L1 5761 6059 -595 6 1187 664 228 90 50 chr5 78964949 78965171 -73572088 + Lx9 LINE L1 7259 7489 -155 6 1187 540 45 0 0 chr5 78965199 78965266 -73571993 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 6 1187 5541 184 63 3 chr5 78965266 78966342 -73570917 + Lx4A LINE L1 5914 7054 -4 6 1187 22 0 0 0 chr5 78966985 78967007 -73570252 + AT_rich Low_complexity Low_complexity 1 22 0 6 1187 912 323 17 62 chr5 78967137 78967669 -73569590 - Lx9 LINE L1 -176 7468 6961 6 1187 556 294 10 36 chr5 78969129 78969323 -73567936 - B3A SINE B2 -9 189 1 6 1187 473 257 27 20 chr5 78970513 78970660 -73566599 - RLTR11B LTR ERVK -22 431 284 6 1187 426 39 0 0 chr5 78970700 78970752 -73566507 + (TTTTC)n Simple_repeat Simple_repeat 5 56 0 6 1187 615 81 0 0 chr5 78970781 78970867 -73566392 + (TTCTC)n Simple_repeat Simple_repeat 3 88 0 6 1187 3556 96 14 0 chr5 78970867 78971367 -73565892 - L1_Mus3 LINE L1 0 6638 6132 6 1187 939 273 12 47 chr5 78971430 78971728 -73565531 - RLTR11B LTR ERVK -162 283 1 6 1187 254 127 55 0 chr5 78971781 78971836 -73565423 + (TATAG)n Simple_repeat Simple_repeat 5 62 0 6 1187 316 200 40 54 chr5 78971938 78972012 -73565247 - B3 SINE B2 -143 73 1 6 1187 1513 166 106 41 chr5 78974143 78974483 -73562776 + ORR1B2 LTR MaLR 3 364 -3 6 1187 303 343 50 55 chr5 78974557 78974776 -73562483 + MLT1B LTR MaLR 2 219 -171 6 1187 698 329 125 18 chr5 78974777 78975281 -73561978 - MER67C LTR ERV1 0 711 154 6 1187 549 0 0 0 chr5 78975315 78975376 -73561883 + (GAA)n Simple_repeat Simple_repeat 1 61 0 6 1187 1092 119 0 0 chr5 78975397 78975565 -73561694 + (GAA)n Simple_repeat Simple_repeat 1 168 0 6 1187 24 77 0 0 chr5 78975973 78976025 -73561234 + AT_rich Low_complexity Low_complexity 1 52 0 6 1187 4666 60 0 0 chr5 78976428 78977013 -73560246 - IAPEz-int LTR ERVK -4715 1766 1182 6 1187 627 159 58 6 chr5 78977618 78977789 -73559470 - Lx9 LINE L1 -2 7642 7463 6 1187 257 178 42 62 chr5 78977811 78977907 -73559352 - Lx9 LINE L1 -121 7523 7430 6 1187 1005 223 87 8 chr5 78977920 78978032 -73559227 + Lx9 LINE L1 7135 7259 -385 6 1187 486 0 0 0 chr5 78978032 78978086 -73559173 + (TAA)n Simple_repeat Simple_repeat 2 55 0 6 1187 1005 223 87 8 chr5 78978086 78978226 -73559033 + Lx9 LINE L1 7260 7406 -238 6 1187 314 23 0 23 chr5 78978226 78978270 -73558989 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1187 3611 115 6 7 chr5 78978312 78978855 -73558404 - L1_Mus4 LINE L1 -12 6624 6083 6 1187 558 260 190 4 chr5 78979065 78979297 -73557962 - Lx9 LINE L1 -7 7637 7363 6 1187 1215 305 142 36 chr5 78979302 78980144 -73557115 - Lx9 LINE L1 -50 7594 6663 6 1187 515 221 207 11 chr5 78980218 78980342 -73556917 + Lx3C LINE L1 6729 6860 -116 6 1187 378 91 0 0 chr5 78980342 78980397 -73556862 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1187 297 0 0 0 chr5 78980397 78980429 -73556830 + (GA)n Simple_repeat Simple_repeat 1 33 0 6 1187 515 191 268 12 chr5 78980429 78980500 -73556759 + Lx3C LINE L1 6861 6973 -3 6 1187 667 218 15 36 chr5 78980762 78980923 -73556336 - ORR1C2 LTR MaLR -164 220 61 6 1187 500 273 69 25 chr5 78981622 78981825 -73555434 - Tigger7 DNA MER2_type -9 2482 2271 6 1187 22 88 0 0 chr5 78982000 78982057 -73555202 + AT_rich Low_complexity Low_complexity 1 57 0 6 1187 727 147 14 7 chr5 78982592 78982736 -73554523 + GA-rich Low_complexity Low_complexity 3 147 0 6 1187 570 327 34 10 chr5 78983553 78983757 -73553502 - B3 SINE B2 -5 211 3 6 1187 956 310 119 30 chr5 78983794 78984330 -73552929 + Lx8 LINE L1 6860 7443 -30 6 1187 591 233 111 13 chr5 78984359 78984585 -73552674 + Lx9 LINE L1 7396 7643 -1 6 1187 198 0 0 0 chr5 78984817 78984839 -73552420 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 6 1187 432 0 0 0 chr5 78984839 78984887 -73552372 + (TATG)n Simple_repeat Simple_repeat 2 49 0 6 1187 629 259 127 0 chr5 78984888 78985054 -73552205 - B3 SINE B2 -23 193 7 6 1187 569 287 35 0 chr5 78985625 78985799 -73551460 + B3A SINE B2 1 180 -18 6 1187 339 85 0 0 chr5 78986780 78986827 -73550432 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1187 33061 80 11 6 chr5 78987254 78991892 -73545367 - L1Md_F2 LINE L1 -12 6570 1907 6 1187 223 26 50 25 chr5 78991892 78991932 -73545327 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 6 1187 33061 137 35 11 chr5 78991932 78993609 -73543650 - L1Md_F2 LINE L1 -3977 1906 208 6 1187 464 204 123 5 chr5 78994103 78994270 -73542989 - RMER6A LTR ERVK -521 235 1 6 1187 779 278 43 40 chr5 78994640 78994940 -73542319 - MER34 LTR ERV1 -53 489 189 6 1187 375 323 31 16 chr5 78995193 78995322 -73541937 - Lx8 LINE L1 -223 7250 7120 6 1187 266 295 197 0 chr5 78995365 78995487 -73541772 + Lx8 LINE L1 6766 6911 -562 6 1187 681 296 38 32 chr5 78995478 78995503 -73541756 + Lx2B LINE L1 5567 5588 -568 6 1187 1005 126 0 6 chr5 78995503 78995671 -73541588 + L1_Mus4 LINE L1 6466 6632 -4 6 1187 2449 154 25 6 chr5 78995671 78996112 -73541147 + Lx2B LINE L1 5587 6009 -991 6 1187 252 342 0 0 chr5 78996289 78996368 -73540891 - ID4_ SINE ID -2 81 3 6 1187 3652 191 48 14 chr5 78996386 78997179 -73540080 + Lx2B LINE L1 5998 6913 -145 6 1187 282 263 0 26 chr5 78997677 78997755 -73539504 + CT-rich Low_complexity Low_complexity 3 78 0 6 1187 3979 17 0 24 chr5 78998098 78998649 -73538610 - L1Md_T LINE L1 -620 5962 5423 6 1187 1801 57 0 0 chr5 78998649 78998876 -73538383 + L1Md_A LINE L1 6351 6577 -5 6 1187 2057 277 61 32 chr5 79000510 79001312 -73535947 + Lx9 LINE L1 6811 7635 -9 1 1187 521 30 15 0 chr5 79001324 79001391 -73535868 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 1187 6265 179 61 33 chr5 79001396 79001543 -73535716 + Lx4B LINE L1 5540 5703 -1355 3 1187 405 0 0 0 chr5 79001543 79001588 -73535671 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1187 207 0 0 0 chr5 79001588 79001610 -73535649 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 1187 6265 196 24 26 chr5 79001610 79002849 -73534410 + Lx4B LINE L1 5704 6928 -130 3 1187 3812 86 2 11 chr5 79002840 79003139 -73534120 - Lx LINE L1 -483 6171 5873 6 1187 275 0 29 0 chr5 79003139 79003174 -73534085 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1187 3812 79 241 9 chr5 79003174 79003439 -73533820 - Lx LINE L1 -782 5872 5537 6 1187 395 213 11 0 chr5 79003624 79003718 -73533541 + Lx3C LINE L1 6880 6974 -2 8 1187 194 135 39 0 chr5 79004046 79004098 -73533161 + (TCTCTG)n Simple_repeat Simple_repeat 5 58 0 9 1187 408 55 0 0 chr5 79004098 79004153 -73533106 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1 1187 806 284 9 37 chr5 79005165 79005464 -73531795 + Lx9 LINE L1 5390 5685 -192 1 1187 262 242 11 42 chr5 79005487 79005582 -73531677 + Lx9 LINE L1 5937 6028 -1616 1 1187 874 234 85 38 chr5 79005680 79005915 -73531344 + Lx9 LINE L1 6312 6557 -1087 1 1187 33 25 0 0 chr5 79006204 79006244 -73531015 + AT_rich Low_complexity Low_complexity 1 40 0 1 1187 2353 106 22 6 chr5 79006437 79006796 -73530463 - Lx3_Mus LINE L1 -1 7008 6644 1 1187 180 0 0 0 chr5 79008066 79008086 -73529173 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1 1187 2708 85 0 0 chr5 79008352 79008715 -73528544 - L1_Mm LINE L1 -964 4919 4557 1 1187 756 98 9 9 chr5 79008711 79008824 -73528435 - L1_Mm LINE L1 -3024 2859 2747 1 1187 5995 75 4 1 chr5 79008821 79009619 -73527640 + L1Md_F2 LINE L1 4790 5589 -294 1 1187 7646 54 19 1 chr5 79009620 79010592 -73526667 + L1Md_F2 LINE L1 5591 6579 -3 1 1187 272 302 81 32 chr5 79010921 79011044 -73526215 + MIRb SINE MIR 69 197 -71 1 1187 615 236 198 4 chr5 79011090 79011333 -73525926 + Lx LINE L1 6364 6653 -1 1 1187 21 0 0 0 chr5 79011333 79011354 -73525905 + AT_rich Low_complexity Low_complexity 1 21 0 1 1187 1935 103 83 45 chr5 79011635 79011971 -73525288 + RLTR10B2 LTR ERVK 17 365 0 2 1187 194 0 0 37 chr5 79012037 79012064 -73525195 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 2 1187 31 44 0 0 chr5 79012688 79012733 -73524526 + AT_rich Low_complexity Low_complexity 1 45 0 2 1187 23 0 0 0 chr5 79013630 79013653 -73523606 + AT_rich Low_complexity Low_complexity 1 23 0 2 1187 23 0 0 0 chr5 79014484 79014507 -73522752 + AT_rich Low_complexity Low_complexity 1 23 0 2 1187 1865 127 34 22 chr5 79014533 79014854 -73522405 + Lx LINE L1 6330 6654 0 2 1187 1336 266 91 33 chr5 79015047 79015443 -73521816 - MTD LTR MaLR 0 419 1 2 1187 21 0 0 0 chr5 79015537 79015558 -73521701 + AT_rich Low_complexity Low_complexity 1 21 0 2 1187 558 185 0 40 chr5 79015866 79016018 -73521241 + (TATG)n Simple_repeat Simple_repeat 3 148 0 2 1187 186 191 0 0 chr5 79017351 79017398 -73519861 + T-rich Low_complexity Low_complexity 1 47 0 2 1187 301 167 192 0 chr5 79017408 79017486 -73519773 - Lx2 LINE L1 -1 6996 6904 3 1187 504 0 0 0 chr5 79017509 79017565 -73519694 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1187 423 0 0 0 chr5 79017565 79017611 -73519648 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1187 745 279 32 37 chr5 79017954 79018170 -73519089 - B3 SINE B2 -1 215 1 3 1187 180 0 0 0 chr5 79019121 79019141 -73518118 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 1187 216 304 85 37 chr5 79019592 79019674 -73517585 + RSINE1 SINE B4 78 163 -2 3 1187 191 344 47 75 chr5 79020078 79020292 -73516967 - MIRb SINE MIR -50 218 11 3 1187 5272 97 19 1 chr5 79020346 79021093 -73516166 - Lx3_Mus LINE L1 0 7009 6250 3 1187 1381 367 58 41 chr5 79021487 79022448 -73514811 - Lx8 LINE L1 -153 7320 6343 3 1187 971 193 84 5 chr5 79022448 79022712 -73514547 - RMER19A LTR ERVK -144 593 256 3 1187 17418 113 25 8 chr5 79022718 79024096 -73513163 - L1_Mus3 LINE L1 -1 6637 5237 4 1187 194 62 31 0 chr5 79024096 79024128 -73513131 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1187 17418 141 36 8 chr5 79024128 79026591 -73510668 - L1_Mus3 LINE L1 -647 5236 2712 4 1187 1548 165 15 0 chr5 79026591 79026857 -73510402 - RMER19A LTR ERVK -467 270 1 3 1187 35 54 0 0 chr5 79029250 79029306 -73507953 + AT_rich Low_complexity Low_complexity 1 56 0 4 1187 327 25 0 0 chr5 79029636 79029676 -73507583 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1187 4065 203 77 19 chr5 79031565 79032503 -73504756 - Lx2B LINE L1 0 7000 6009 4 1187 354 217 101 90 chr5 79032496 79032724 -73504535 - Lx2B LINE L1 -6017 967 720 4 1187 22 35 0 0 chr5 79033086 79033115 -73504144 + AT_rich Low_complexity Low_complexity 1 29 0 4 1187 1778 251 8 8 chr5 79033637 79034038 -73503221 + Lx6 LINE L1 7060 7460 0 4 1187 3674 256 46 8 chr5 79034083 79035017 -73502242 + Lx7 LINE L1 6267 7236 -460 4 1187 281 188 109 0 chr5 79035017 79035081 -73502178 - RLTR24 LTR ERV1 0 529 459 4 1187 363 244 122 0 chr5 79035375 79035498 -73501761 + RLTR24 LTR ERV1 392 529 0 4 1187 327 193 0 0 chr5 79035498 79035555 -73501704 + Lx7 LINE L1 7233 7289 -407 4 1187 4181 27 0 2 chr5 79035613 79036102 -73501157 - L1Md_F2 LINE L1 -2 6580 6093 5 1187 210 37 0 0 chr5 79036129 79036156 -73501103 + (TGG)n Simple_repeat Simple_repeat 3 29 0 5 1187 310 208 74 53 chr5 79036183 79036317 -73500942 + Lx7 LINE L1 7569 7678 -18 4 1187 298 211 0 17 chr5 79036327 79036385 -73500874 + B3A SINE B2 3 59 -139 5 148 1273 279 51 8 chr5 79036389 79036744 -73500515 - ORR1D1 LTR MaLR -4 370 1 5 1188 295 283 125 54 chr5 79036812 79037036 -73500223 + RMER15 LTR ERVL 303 542 -33 5 1188 228 361 65 65 chr5 79037883 79038037 -73499222 - ORR1D2 LTR MaLR -131 239 86 5 1188 825 302 132 21 chr5 79038465 79038887 -73498372 + RMER15 LTR ERVL 45 575 0 5 1188 668 314 69 26 chr5 79041779 79042240 -73495019 + L1MB8 LINE L1 5535 6015 -163 5 1188 476 127 34 28 chr5 79042254 79042432 -73494827 + (TA)n Simple_repeat Simple_repeat 2 180 0 5 1188 7448 110 6 1 chr5 79042478 79043896 -73493363 - L1_Mus4 LINE L1 -2 6634 5207 5 1188 209 108 0 26 chr5 79044547 79044585 -73492674 + (TA)n Simple_repeat Simple_repeat 2 38 0 6 1188 468 123 0 0 chr5 79045167 79045240 -73492019 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 1188 311 0 26 0 chr5 79045323 79045362 -73491897 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 6 1188 348 66 0 95 chr5 79047380 79047464 -73489795 + (CAAA)n Simple_repeat Simple_repeat 2 77 0 6 1188 497 241 15 8 chr5 79047499 79047633 -73489626 + Lx7 LINE L1 7562 7696 0 6 1188 492 18 0 0 chr5 79047659 79047716 -73489543 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1188 256 432 32 6 chr5 79047724 79047880 -73489379 - B3A SINE B2 -34 164 5 6 1188 837 308 236 34 chr5 79048294 79048797 -73488462 - Lx8 LINE L1 -459 7014 6410 6 1188 266 380 48 53 chr5 79048963 79049169 -73488090 - LTR16E1 LTR ERVL -9 529 325 6 1188 25 0 0 0 chr5 79050107 79050132 -73487127 + AT_rich Low_complexity Low_complexity 1 25 0 6 1188 21 0 0 0 chr5 79052096 79052117 -73485142 + AT_rich Low_complexity Low_complexity 1 21 0 7 1188 204 67 0 0 chr5 79052210 79052240 -73485019 + (TTTTTA)n Simple_repeat Simple_repeat 1 30 0 7 1188 5586 30 0 0 chr5 79052265 79052921 -73484338 - L1Md_T LINE L1 0 6582 5927 7 1188 3360 16 0 0 chr5 79052921 79053301 -73483958 + L1Md_T LINE L1 5504 5883 0 7 1188 7528 70 3 13 chr5 79053329 79054405 -73482854 - L1Md_F2 LINE L1 -19 6563 5498 7 1188 1336 264 88 49 chr5 79054420 79054502 -73482757 + ORR1D2-int LTR MaLR 961 1042 -328 7 1188 1344 101 11 0 chr5 79054502 79054690 -73482569 + B2_Mm1t SINE B2 1 190 -3 7 1188 1336 264 88 49 chr5 79054690 79054993 -73482266 + ORR1D2-int LTR MaLR 1043 1361 -9 7 1188 1043 305 42 20 chr5 79055003 79055357 -73481902 + ORR1D2 LTR MaLR 3 364 -6 7 1188 323 333 125 22 chr5 79055952 79056265 -73480994 + L2 LINE L2 2098 2442 -977 7 1188 720 311 30 41 chr5 79056517 79056812 -73480447 + B4A SINE B4 1 292 0 7 1188 307 95 40 26 chr5 79056865 79056941 -73480318 + (TA)n Simple_repeat Simple_repeat 1 77 0 7 1188 792 299 118 31 chr5 79057253 79057602 -73479657 + MTE2b LTR MaLR 1 379 0 7 1188 899 336 47 15 chr5 79057625 79057966 -73479293 + MTE2b-int LTR MaLR 26 377 -1203 7 1188 195 269 96 0 chr5 79058645 79058697 -73478562 - L4 LINE RTE -807 1222 1166 8 1188 536 269 32 6 chr5 79058957 79059114 -73478145 - MER67D LTR ERV1 -353 161 1 8 1188 504 0 0 0 chr5 79059306 79059362 -73477897 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1188 21 36 0 0 chr5 79060203 79060231 -73477028 + AT_rich Low_complexity Low_complexity 1 28 0 8 1188 344 269 55 34 chr5 79060252 79060398 -73476861 + Lx8 LINE L1 7322 7470 -3 8 1188 250 303 26 0 chr5 79060426 79060502 -73476757 - Lx9 LINE L1 -349 7295 7218 8 1188 516 288 10 42 chr5 79060496 79060688 -73476571 + Lx9 LINE L1 6903 7088 -556 8 1188 225 0 0 0 chr5 79060802 79060827 -73476432 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1188 192 77 0 0 chr5 79060827 79060852 -73476407 + (TA)n Simple_repeat Simple_repeat 2 27 0 8 1188 1740 159 91 38 chr5 79061388 79061760 -73475499 - Lx2 LINE L1 -1 6996 6605 8 1188 238 140 17 34 chr5 79062432 79062491 -73474768 + CT-rich Low_complexity Low_complexity 3 60 0 8 1188 189 0 0 0 chr5 79062492 79062513 -73474746 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 9 1188 880 92 62 0 chr5 79062515 79062645 -73474614 - B1_Mus1 SINE Alu -10 138 1 9 1188 246 162 19 39 chr5 79062647 79062750 -73474509 + (TCTCTG)n Simple_repeat Simple_repeat 6 106 0 9 1188 23 68 0 0 chr5 79063158 79063202 -73474057 + AT_rich Low_complexity Low_complexity 1 44 0 9 1188 282 194 0 0 chr5 79063362 79063429 -73473830 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 9 1188 2675 142 6 19 chr5 79063429 79063901 -73473358 + RLTR31B_Mm LTR ERVK 1 466 -91 9 1188 22 0 0 0 chr5 79063919 79063941 -73473318 + AT_rich Low_complexity Low_complexity 1 22 0 9 1188 1583 249 46 19 chr5 79064096 79064506 -73472753 - MTC LTR MaLR 0 421 1 9 1188 333 0 0 0 chr5 79064690 79064727 -73472532 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1188 611 297 68 98 chr5 79064727 79064915 -73472344 - Lx9 LINE L1 -168 7476 7285 9 1188 1958 164 45 8 chr5 79064915 79065290 -73471969 - Lx2A1 LINE L1 -1 7007 6619 1 1188 611 308 62 85 chr5 79065290 79065565 -73471694 - Lx9 LINE L1 -360 7284 6894 9 1188 516 68 0 0 chr5 79068546 79068619 -73468640 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1188 26 30 0 0 chr5 79068909 79068942 -73468317 + AT_rich Low_complexity Low_complexity 1 33 0 1 1188 425 50 0 16 chr5 79069030 79069091 -73468168 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1188 414 0 0 0 chr5 79069941 79069987 -73467272 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1188 8911 83 3 1 chr5 79070596 79071825 -73465434 - L1_Mm LINE L1 -842 5041 3810 1 1188 3975 79 9 9 chr5 79071824 79072365 -73464894 + L1_Mm LINE L1 5049 5590 -293 1 1188 7340 79 0 4 chr5 79072365 79073353 -73463906 + L1Md_F2 LINE L1 5587 6570 -12 1 1188 4725 122 18 9 chr5 79074065 79074857 -73462402 + Lx3_Mus LINE L1 1281 2079 -3807 1 1188 9026 107 26 5 chr5 79074852 79077024 -73460235 + Lx3_Mus LINE L1 4804 7004 -5 1 1188 183 184 0 0 chr5 79077196 79077234 -73460025 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1188 2799 47 6 3 chr5 79077500 79077845 -73459414 + ORR1A1 LTR MaLR 1 346 0 1 1188 681 132 32 24 chr5 79078461 79078585 -73458674 - L1_Mur1 LINE L1 -3690 2196 2072 1 1188 486 0 0 0 chr5 79078587 79078641 -73458618 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 1 1188 1390 128 49 0 chr5 79078642 79078868 -73458391 - Lx3A LINE L1 -16 6965 6729 1 1188 6297 83 3 3 chr5 79078883 79079736 -73457523 - L1_Mus2 LINE L1 -6 6560 5708 1 1188 27 39 0 19 chr5 79079736 79079763 -73457496 + AT_rich Low_complexity Low_complexity 1 27 0 1 1188 1238 114 0 5 chr5 79079763 79079948 -73457311 - B2_Mm2 SINE B2 -11 184 1 1 1188 27 39 0 19 chr5 79079948 79079972 -73457287 + AT_rich Low_complexity Low_complexity 1 24 0 1 1188 783 161 0 0 chr5 79080865 79081045 -73456214 + GA-rich Low_complexity Low_complexity 1 180 0 1 1188 284 0 28 0 chr5 79081272 79081308 -73455951 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1188 2129 293 45 89 chr5 79082157 79083227 -73454032 - Lx9 LINE L1 -218 7426 6404 1 1188 27 49 0 0 chr5 79083240 79083281 -73453978 + AT_rich Low_complexity Low_complexity 1 41 0 1 1188 250 319 56 21 chr5 79083432 79083576 -73453683 + Lx9 LINE L1 7212 7360 -284 1 1188 374 319 35 75 chr5 79083576 79083633 -73453626 + ID_B1 SINE B4 33 223 0 1 1188 478 296 8 0 chr5 79083633 79083775 -73453484 + B1_Mus1 SINE Alu 5 148 0 1 1188 357 24 0 0 chr5 79083873 79083915 -73453344 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1188 543 369 46 41 chr5 79084159 79084360 -73452899 - Lx8 LINE L1 -277 7196 6996 1 1188 3693 37 7 0 chr5 79084360 79084815 -73452444 - L1Md_F3 LINE L1 -12 6572 6115 1 1188 543 369 46 41 chr5 79084815 79084958 -73452301 - Lx8 LINE L1 -478 6995 6850 1 1188 395 115 24 3 chr5 79085566 79085640 -73451619 + Lx LINE L1 6253 6312 -342 1 1188 471 18 0 0 chr5 79086408 79086464 -73450795 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1188 316 340 56 5 chr5 79086563 79086758 -73450501 + Tigger13a DNA MER2_type 277 481 -290 1 1188 670 53 10 10 chr5 79087092 79087188 -73450071 + (TA)n Simple_repeat Simple_repeat 2 97 0 1 1188 183 329 58 23 chr5 79089281 79089368 -73447891 + L2 LINE L2 2566 2655 -764 1 1188 40 37 0 0 chr5 79089394 79089448 -73447811 + AT_rich Low_complexity Low_complexity 1 54 0 1 1188 1399 143 29 0 chr5 79089452 79089690 -73447569 - Lx2 LINE L1 -1 6996 6752 1 1188 600 27 0 0 chr5 79089818 79089892 -73447367 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1188 1689 313 96 42 chr5 79089905 79090968 -73446291 - Lx9 LINE L1 -219 7425 6306 1 1188 2291 269 80 36 chr5 79090997 79092052 -73445207 + Lx9 LINE L1 4833 5976 -1668 1 1188 201 39 0 0 chr5 79092052 79092078 -73445181 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1188 594 332 89 28 chr5 79092078 79092208 -73445051 + Lx9 LINE L1 5977 6113 -1531 1 1188 1156 64 116 0 chr5 79092531 79092703 -73444556 + B2_Mm2 SINE B2 2 193 -2 1 1188 5459 81 1 3 chr5 79094766 79095501 -73441758 + L1_Mus1 LINE L1 5821 6554 -13 1 1188 423 0 0 0 chr5 79095501 79095548 -73441711 + (TAA)n Simple_repeat Simple_repeat 3 49 0 1 1188 21 0 0 0 chr5 79096002 79096023 -73441236 + AT_rich Low_complexity Low_complexity 1 21 0 1 1188 661 233 27 0 chr5 79096169 79096315 -73440944 - ORR1B2 LTR MaLR -217 150 1 1 1188 229 321 24 12 chr5 79096387 79096472 -73440787 + MLT1C LTR MaLR 335 420 -47 1 1188 21 82 0 0 chr5 79096530 79096579 -73440680 + AT_rich Low_complexity Low_complexity 1 49 0 1 1188 661 362 32 6 chr5 79098361 79098700 -73438559 - Lx8 LINE L1 -137 7336 6989 1 1188 472 314 67 36 chr5 79099105 79099270 -73437989 + B3 SINE B2 1 170 -46 1 1188 2281 212 46 6 chr5 79099330 79099833 -73437426 + Lx4B LINE L1 6521 7043 -15 1 1188 627 144 0 0 chr5 79099846 79099957 -73437302 + (CAGA)n Simple_repeat Simple_repeat 2 112 0 1 1188 25 31 0 0 chr5 79100744 79100776 -73436483 + AT_rich Low_complexity Low_complexity 1 32 0 1 1188 200 231 13 0 chr5 79100896 79100974 -73436285 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 1 1188 223 330 30 30 chr5 79101370 79101470 -73435789 + MIR SINE MIR 132 231 -31 1 1188 361 340 71 44 chr5 79102062 79102585 -73434674 - L1MB2 LINE L1 -38 6133 5597 1 1188 791 109 7 0 chr5 79102690 79102828 -73434431 + (CA)n Simple_repeat Simple_repeat 1 139 0 1 1188 503 335 59 19 chr5 79102885 79103141 -73434118 + Lx7 LINE L1 7070 7335 -361 1 1188 639 242 26 17 chr5 79103948 79104179 -73433080 + L1_Mur3 LINE L1 3107 3339 -2541 1 1188 1671 293 56 29 chr5 79104196 79104803 -73432456 + Lx7 LINE L1 6745 7371 -325 1 1188 540 0 0 0 chr5 79104803 79104863 -73432396 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1188 1671 293 56 29 chr5 79104863 79104881 -73432378 + Lx7 LINE L1 7372 7387 -309 1 1188 21 0 0 0 chr5 79105476 79105497 -73431762 + AT_rich Low_complexity Low_complexity 1 21 0 1 1188 1288 209 39 100 chr5 79106036 79106425 -73430834 + ORR1B2 LTR MaLR 3 367 0 1 1188 360 94 0 0 chr5 79107020 79107073 -73430186 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1188 237 113 27 40 chr5 79107876 79107950 -73429309 + T-rich Low_complexity Low_complexity 2 74 0 1 1188 260 343 35 35 chr5 79108221 79108363 -73428896 + RSINE1 SINE B4 11 152 -13 1 1188 26 30 0 0 chr5 79108616 79108649 -73428610 + AT_rich Low_complexity Low_complexity 1 33 0 1 1188 21 36 0 0 chr5 79109271 79109299 -73427960 + AT_rich Low_complexity Low_complexity 1 28 0 1 1188 1110 303 45 32 chr5 79109619 79110203 -73427056 + L1MA6 LINE L1 5261 5851 -449 1 1188 26 30 0 0 chr5 79110449 79110482 -73426777 + AT_rich Low_complexity Low_complexity 1 33 0 1 1188 1464 42 0 15 chr5 79111716 79111963 -73425296 + L1Md_F3 LINE L1 6383 6584 0 1 1188 2409 97 11 11 chr5 79112091 79112446 -73424813 - L1_Mm LINE L1 -489 5394 5040 1 1188 3880 76 8 15 chr5 79112446 79112979 -73424280 + L1_Mus2 LINE L1 6038 6566 0 1 1188 1587 102 4 72 chr5 79113023 79113286 -73423973 + L1_Mus2 LINE L1 6321 6565 -1 1 1188 243 350 25 17 chr5 79113333 79113452 -73423807 + MIR SINE MIR 21 140 -122 1 1188 234 0 0 0 chr5 79113474 79113500 -73423759 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1188 6755 195 31 26 chr5 79114238 79115931 -73421328 - Lx4B LINE L1 -4 7054 5359 1 1188 450 0 0 0 chr5 79115931 79115981 -73421278 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1188 3500 187 35 11 chr5 79115981 79116174 -73421085 - Lx4B LINE L1 -519 5358 5154 1 1188 1277 251 22 5 chr5 79116219 79116587 -73420672 - Lx2B LINE L1 -146 6854 6256 1 1188 1506 284 75 68 chr5 79116587 79117224 -73420035 + RLTR26 LTR ERVK 1 642 0 1 1188 1139 231 0 0 chr5 79117224 79117449 -73419810 - Lx3C LINE L1 -370 6606 6382 1 1188 593 247 33 33 chr5 79117493 79117673 -73419586 + MTD LTR MaLR 234 413 -6 1 1188 304 299 11 33 chr5 79117754 79117844 -73419415 + MLT1B LTR MaLR 303 390 0 1 1188 711 145 29 6 chr5 79119308 79119481 -73417778 + (TA)n Simple_repeat Simple_repeat 2 178 0 1 1188 26 64 0 0 chr5 79119809 79119856 -73417403 + AT_rich Low_complexity Low_complexity 1 47 0 1 1188 21 0 0 0 chr5 79120659 79120680 -73416579 + AT_rich Low_complexity Low_complexity 1 21 0 1 1188 10936 89 19 0 chr5 79120792 79122357 -73414902 - L1_Mm LINE L1 -2274 3609 2015 1 1188 7572 71 2 2 chr5 79122357 79123345 -73413914 + L1Md_F2 LINE L1 5593 6580 -2 1 1188 327 374 13 64 chr5 79123666 79123823 -73413436 - B4A SINE B4 -1 291 143 1 1188 22 0 0 0 chr5 79124010 79124032 -73413227 + AT_rich Low_complexity Low_complexity 1 22 0 1 1188 2336 61 0 0 chr5 79124213 79124533 -73412726 - L1Md_F2 LINE L1 0 6582 6265 1 1188 606 14 0 0 chr5 79124677 79124748 -73412511 + (CTAAT)n Simple_repeat Simple_repeat 5 75 0 1 1188 329 55 0 0 chr5 79125355 79125410 -73411849 + Lx LINE L1 6600 6654 0 1 1188 1056 165 5 25 chr5 79125443 79125604 -73411655 + B2_Mm2 SINE B2 1 161 -34 1 1188 405 0 0 0 chr5 79125604 79125649 -73411610 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 1 1188 1056 165 5 25 chr5 79125649 79125686 -73411573 + B2_Mm2 SINE B2 162 195 0 1 1188 252 0 0 0 chr5 79125694 79125722 -73411537 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1188 315 115 0 0 chr5 79126394 79126446 -73410813 - Lx2 LINE L1 -5 6992 6941 1 1188 1237 269 68 20 chr5 79126537 79126931 -73410328 - BGLII_B LTR ERVK -23 418 6 1 1188 552 392 5 5 chr5 79128260 79128478 -73408781 + B4A SINE B4 8 225 -67 1 1188 3824 161 96 64 chr5 79128556 79129434 -73407825 - RMER17A2 LTR ERVK 0 906 1 1 1188 6069 78 5 1 chr5 79130514 79131350 -73405909 - L1Md_F2 LINE L1 -662 5922 5083 1 1188 726 52 0 0 chr5 79131348 79131444 -73405815 + L1Md_F2 LINE L1 5873 5968 -616 1 1188 2479 73 12 0 chr5 79131444 79131771 -73405488 + IAPEY_LTR LTR ERVK 55 385 0 1 1188 4663 51 29 2 chr5 79131771 79132361 -73404898 + L1Md_F2 LINE L1 5963 6568 -14 1 1188 554 314 97 22 chr5 79132369 79132916 -73404343 + L1MC3 LINE L1 7198 7785 0 1 1188 24 77 0 0 chr5 79133651 79133703 -73403556 + AT_rich Low_complexity Low_complexity 1 52 0 2 1188 364 82 33 0 chr5 79133912 79133973 -73403286 + (TA)n Simple_repeat Simple_repeat 1 63 0 2 1188 423 0 0 0 chr5 79133973 79134020 -73403239 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1188 198 103 0 0 chr5 79134020 79134048 -73403211 + (CATATA)n Simple_repeat Simple_repeat 5 33 0 2 1188 244 285 79 21 chr5 79134094 79134234 -73403025 - LTR48 LTR ERV1 -54 733 586 2 1188 359 113 0 16 chr5 79134559 79134622 -73402637 + (TAG)n Simple_repeat Simple_repeat 1 62 0 2 1188 3702 181 26 3 chr5 79135972 79136661 -73400598 + Lx3C LINE L1 6271 6975 -1 2 1188 227 364 50 0 chr5 79137234 79137355 -73399904 + LTR16A LTR ERVL 140 266 -185 2 1188 798 254 49 61 chr5 79137530 79137958 -73399301 - L1_Rod LINE L1 -1237 4610 4188 2 1188 193 436 33 16 chr5 79138006 79138188 -73399071 - L2a LINE L2 -269 3157 2973 2 1188 477 277 15 23 chr5 79138402 79138535 -73398724 - B1_Mur2 SINE Alu 0 149 18 2 1188 455 48 0 16 chr5 79138673 79138736 -73398523 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1188 359 186 31 0 chr5 79138980 79139077 -73398182 + Lx9 LINE L1 7538 7637 -7 2 1188 213 208 0 0 chr5 79139692 79139769 -73397490 + CT-rich Low_complexity Low_complexity 2 78 0 2 1188 473 166 205 40 chr5 79140522 79140673 -73396586 - Lx4B LINE L1 -17 7041 6866 2 1188 1053 145 4 2 chr5 79140672 79140858 -73396401 + Lx5 LINE L1 5631 5851 -391 2 1188 444 238 38 0 chr5 79140835 79140940 -73396319 - Lx9 LINE L1 -754 6890 6782 2 1188 2160 211 78 24 chr5 79140932 79141520 -73395739 + Lx9 LINE L1 6982 7601 -43 2 1188 836 336 30 50 chr5 79141773 79142071 -73395188 + B4 SINE B4 1 292 0 2 1188 558 0 0 0 chr5 79142365 79142427 -73394832 + (TAA)n Simple_repeat Simple_repeat 2 63 0 2 1188 344 59 0 19 chr5 79142519 79142571 -73394688 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 2 1188 620 332 31 45 chr5 79143070 79143452 -73393807 - MTE2a LTR MaLR -2 377 1 2 1188 320 211 26 13 chr5 79143589 79143666 -73393593 + Lx7 LINE L1 7177 7254 -442 2 1188 5181 220 18 11 chr5 79143677 79143954 -73393305 - Lx2B LINE L1 -3 6997 6711 2 1188 252 77 0 0 chr5 79143954 79143993 -73393266 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1188 5181 220 18 11 chr5 79143993 79144878 -73392381 - Lx2B LINE L1 -290 6710 5827 2 1188 4165 51 9 2 chr5 79144932 79145458 -73391801 - L1Md_F2 LINE L1 -8 6574 6045 2 1188 3305 177 39 2 chr5 79145458 79146076 -73391183 - L1_Mur1 LINE L1 -45 5841 5201 2 1188 1095 246 80 86 chr5 79146076 79146529 -73390730 + Lx7 LINE L1 7245 7694 -2 2 1188 35 54 0 0 chr5 79146702 79146758 -73390501 + AT_rich Low_complexity Low_complexity 1 56 0 2 1188 28 0 0 0 chr5 79146861 79146889 -73390370 + AT_rich Low_complexity Low_complexity 1 28 0 2 1188 411 324 81 5 chr5 79146940 79147126 -73390133 - B3 SINE B2 -14 202 3 2 1188 1923 47 0 0 chr5 79147529 79147763 -73389496 + L1Md_F2 LINE L1 5352 5585 -298 2 1188 8023 52 2 0 chr5 79147764 79148758 -73388501 + L1Md_F2 LINE L1 5587 6582 0 2 1188 22 0 0 0 chr5 79148771 79148793 -73388466 + AT_rich Low_complexity Low_complexity 1 22 0 2 1188 270 0 0 0 chr5 79148866 79148896 -73388363 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1188 237 340 87 68 chr5 79149216 79149468 -73387791 + MER31B LTR ERV1 77 333 -133 2 1188 679 80 18 0 chr5 79149581 79149693 -73387566 + (TCTA)n Simple_repeat Simple_repeat 4 117 0 2 1188 25 0 0 0 chr5 79150809 79150834 -73386425 + AT_rich Low_complexity Low_complexity 1 25 0 2 1188 421 335 87 7 chr5 79151730 79151880 -73385379 + B3A SINE B2 3 164 -34 2 1188 417 129 0 0 chr5 79151882 79151952 -73385307 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1188 247 186 68 23 chr5 79152242 79152330 -73384929 + (TCTCTG)n Simple_repeat Simple_repeat 3 94 0 2 1188 222 143 0 0 chr5 79152849 79152898 -73384361 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2 1188 348 77 0 0 chr5 79154012 79154064 -73383195 + (CCTA)n Simple_repeat Simple_repeat 4 55 0 2 1188 444 19 0 0 chr5 79154069 79154122 -73383137 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1188 26 0 0 0 chr5 79154809 79154835 -73382424 + AT_rich Low_complexity Low_complexity 1 26 0 2 1188 21 57 0 0 chr5 79155131 79155166 -73382093 + AT_rich Low_complexity Low_complexity 1 35 0 2 1188 287 250 0 24 chr5 79155631 79155713 -73381546 + L1MEc LINE L1 1503 1582 -4818 2 1188 315 0 0 0 chr5 79156506 79156541 -73380718 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 2 1188 35733 39 3 8 chr5 79156689 79161893 -73375366 + L1Md_A LINE L1 416 5586 -297 2 1188 8298 41 0 0 chr5 79161893 79162888 -73374371 + L1Md_T LINE L1 5587 6581 -1 2 1188 3292 151 8 5 chr5 79162899 79163490 -73373769 - L1_Mur2 LINE L1 -1519 4358 3766 2 1188 3840 163 79 5 chr5 79163487 79164246 -73373013 + L1_Mur2 LINE L1 4379 5193 -684 2 1188 3327 206 44 12 chr5 79164229 79164950 -73372309 + Lx3C LINE L1 6227 7050 -8 2 1188 460 269 67 0 chr5 79165124 79165243 -73372016 - Lx8 LINE L1 -812 6661 6535 2 1188 1055 224 25 121 chr5 79165298 79165624 -73371635 - RMER19C LTR ERVK -406 496 1 2 1188 934 293 99 40 chr5 79165625 79166020 -73371239 + Lx8 LINE L1 6921 7338 -135 2 1188 746 293 122 24 chr5 79166054 79166348 -73370911 + Lx7 LINE L1 6525 6847 -849 2 1188 594 254 43 81 chr5 79166686 79166896 -73370363 + ORR1D1 LTR MaLR 135 336 -38 2 1188 1017 287 23 13 chr5 79166896 79167200 -73370059 - Lx7 LINE L1 -816 6880 6574 2 1189 29 70 0 0 chr5 79167934 79167991 -73369268 + AT_rich Low_complexity Low_complexity 1 57 0 2 1189 27 62 0 0 chr5 79168050 79168098 -73369161 + AT_rich Low_complexity Low_complexity 1 48 0 2 1189 1670 284 36 9 chr5 79168154 79168602 -73368657 - Lx7 LINE L1 -980 6716 6257 2 1189 739 228 31 15 chr5 79168694 79168890 -73368369 - Lx7 LINE L1 -1462 6234 6036 2 1189 212 311 0 0 chr5 79169488 79169549 -73367710 + CT-rich Low_complexity Low_complexity 5 65 0 2 1189 344 325 84 18 chr5 79170658 79170824 -73366435 - MLT1F2 LTR MaLR 0 560 384 2 1189 787 236 115 32 chr5 79170838 79171235 -73366024 + RMER19C LTR ERVK 308 664 -238 2 1189 261 0 0 0 chr5 79172048 79172077 -73365182 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1189 301 250 18 36 chr5 79172084 79172184 -73365075 + Lx6 LINE L1 7339 7440 -20 2 1189 939 127 0 0 chr5 79172184 79172357 -73364902 + (TA)n Simple_repeat Simple_repeat 2 174 0 2 1189 301 250 18 36 chr5 79172357 79172368 -73364891 + Lx6 LINE L1 7441 7448 -12 2 1189 2275 254 12 8 chr5 79173027 79173538 -73363721 - Lx5 LINE L1 -7 7043 6531 2 1189 593 27 13 0 chr5 79173699 79173774 -73363485 + (CATA)n Simple_repeat Simple_repeat 1 76 0 2 1189 360 0 0 0 chr5 79173818 79173858 -73363401 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 1189 186 43 0 0 chr5 79175157 79175180 -73362079 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1189 242 332 138 96 chr5 79176241 79176481 -73360778 - B4A SINE B4 -18 274 25 2 1189 1202 303 91 72 chr5 79176956 79177607 -73359652 - Lx8 LINE L1 -597 6876 6214 2 1189 1216 302 52 8 chr5 79177759 79178146 -73359113 + Lx8 LINE L1 6918 7321 -152 2 1189 459 0 0 0 chr5 79178175 79178226 -73359033 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1189 207 379 41 48 chr5 79178424 79178571 -73358688 - L2a LINE L2 -24 3402 3257 2 1189 522 305 90 38 chr5 79178684 79178950 -73358309 - LTR48 LTR ERV1 -20 767 488 2 1189 798 11 0 0 chr5 79179004 79179095 -73358164 + (CA)n Simple_repeat Simple_repeat 1 91 0 2 1189 290 324 47 81 chr5 79179101 79179334 -73357925 - LTR48 LTR ERV1 -523 264 3 2 1189 222 37 0 0 chr5 79179841 79179868 -73357391 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1189 311 339 69 0 chr5 79179885 79180015 -73357244 - B3A SINE B2 -58 140 2 2 1189 279 118 13 26 chr5 79181272 79181350 -73355909 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1189 513 309 103 65 chr5 79182576 79183082 -73354177 - L1MDb LINE L1 -4988 1421 897 2 1189 307 216 54 36 chr5 79183105 79183273 -73353986 + (CATATA)n Simple_repeat Simple_repeat 3 173 0 2 1189 474 259 103 14 chr5 79185325 79185470 -73351789 + MLT2B4 LTR ERVL 1 158 -398 2 1189 594 242 204 52 chr5 79187336 79187698 -73349561 - MTD LTR MaLR 0 419 3 2 1189 10812 104 14 12 chr5 79187839 79190149 -73347110 - L1VL2 LINE L1 -1033 2582 271 2 1189 4302 140 10 3 chr5 79190155 79190857 -73346402 + Lx LINE L1 5942 6648 -6 2 1189 22 0 0 0 chr5 79191698 79191720 -73345539 + AT_rich Low_complexity Low_complexity 1 22 0 2 1189 290 280 19 0 chr5 79191927 79192034 -73345225 + (CATATA)n Simple_repeat Simple_repeat 5 113 0 2 1189 971 33 0 0 chr5 79193078 79193199 -73344060 - B1_Mus1 SINE Alu 0 148 28 2 1189 182 222 28 0 chr5 79193245 79193281 -73343978 + L2a LINE L2 3292 3328 -98 2 1189 396 0 0 0 chr5 79194007 79194051 -73343208 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1189 1046 214 42 80 chr5 79194222 79194558 -73342701 + Lx7 LINE L1 7367 7689 -7 2 1189 348 24 0 0 chr5 79194574 79194615 -73342644 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1189 25 0 0 0 chr5 79194622 79194647 -73342612 + AT_rich Low_complexity Low_complexity 1 25 0 2 1189 444 208 260 7 chr5 79194689 79194839 -73342420 - MTD LTR MaLR -25 394 207 2 1189 248 297 101 8 chr5 79194945 79195064 -73342195 - L1M2 LINE L1 -758 5542 5413 2 1189 198 103 0 0 chr5 79195072 79195101 -73342158 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 2 1189 551 139 0 10 chr5 79195101 79195203 -73342056 + (TTCC)n Simple_repeat Simple_repeat 4 104 0 2 1189 412 311 17 49 chr5 79195213 79195540 -73341719 - L1_Mur1 LINE L1 -569 5317 4953 2 1189 838 243 62 58 chr5 79196310 79196781 -73340478 + RMER6C LTR ERVK 1 690 0 2 1189 225 94 0 0 chr5 79196998 79197030 -73340229 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2 1189 460 404 38 22 chr5 79197267 79197819 -73339440 - Lx8 LINE L1 -719 6754 6194 2 1189 417 219 130 0 chr5 79198113 79198236 -73339023 - Lx7 LINE L1 -1790 5906 5768 3 1189 1563 299 69 48 chr5 79198230 79199215 -73338044 + L1_Mur3 LINE L1 4384 5375 -505 3 1189 663 266 149 27 chr5 79199215 79199543 -73337716 - ORR1D1 LTR MaLR -2 372 5 3 1189 1563 299 69 48 chr5 79199543 79199609 -73337650 + L1_Mur3 LINE L1 5376 5457 -423 3 1189 344 324 27 59 chr5 79199723 79199910 -73337349 - Lx9 LINE L1 -388 7256 7076 3 1189 225 0 0 0 chr5 79200026 79200051 -73337208 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1189 24 0 0 0 chr5 79200107 79200131 -73337128 + AT_rich Low_complexity Low_complexity 1 24 0 3 1189 588 309 32 25 chr5 79200131 79200484 -73336775 + L1_Mur3 LINE L1 5469 5791 -521 3 1189 401 274 63 0 chr5 79201370 79201545 -73335714 - Lx6 LINE L1 -5 7455 7270 3 1189 253 324 46 0 chr5 79201549 79201657 -73335602 - Lx7 LINE L1 -21 7675 7563 3 1189 3913 141 23 12 chr5 79201766 79202427 -73334832 - Lx LINE L1 -8 6646 5979 3 1189 591 15 0 0 chr5 79202427 79202495 -73334764 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1189 448 53 0 0 chr5 79202495 79202552 -73334707 - L1_Mus4 LINE L1 -772 5864 5808 3 1189 276 59 0 0 chr5 79202551 79202585 -73334674 + L1VL2 LINE L1 182 215 -6120 3 1189 21 0 0 0 chr5 79203125 79203146 -73334113 + AT_rich Low_complexity Low_complexity 1 21 0 3 1189 459 0 0 0 chr5 79203393 79203444 -73333815 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1189 204 40 0 0 chr5 79203607 79203632 -73333627 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 3 1189 263 234 12 38 chr5 79204642 79204722 -73332537 + GA-rich Low_complexity Low_complexity 4 81 0 3 1189 603 112 0 0 chr5 79205014 79205112 -73332147 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 1189 468 0 0 0 chr5 79205680 79205732 -73331527 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 1189 486 222 8 0 chr5 79208232 79208349 -73328910 + Lx9 LINE L1 7520 7637 -7 3 1189 663 48 0 0 chr5 79208491 79208574 -73328685 + (GAA)n Simple_repeat Simple_repeat 2 84 0 3 1189 1337 275 39 68 chr5 79209397 79210457 -73326802 + RMER1B Other Other 1 509 -557 3 1189 4363 184 99 29 chr5 79210468 79211429 -73325830 + RLTR25B LTR ERVK 1 1028 0 3 1189 1108 276 73 22 chr5 79211431 79211787 -73325472 + RMER1B Other Other 462 835 -231 3 1189 272 329 0 0 chr5 79211817 79211887 -73325372 + Lx8 LINE L1 6656 6725 -748 3 1189 2785 106 16 5 chr5 79212235 79212660 -73324599 + L1_Mus3 LINE L1 6202 6631 -7 3 1189 408 111 0 0 chr5 79213044 79213107 -73324152 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1189 965 310 54 32 chr5 79213171 79213578 -73323681 - Lx7 LINE L1 -389 7307 6892 3 1189 897 193 343 0 chr5 79213585 79213853 -73323406 + ORR1B2 LTR MaLR 6 365 -2 3 1189 303 127 62 16 chr5 79213854 79213918 -73323341 + ORR1B2-int LTR MaLR 1 67 -1442 3 1189 619 199 7 60 chr5 79213960 79214110 -73323149 + ORR1B2-int LTR MaLR 431 572 -937 3 1189 565 245 150 35 chr5 79214110 79214397 -73322862 + RLTR15 LTR ERVK 1 320 -39 3 1189 1736 249 82 0 chr5 79214430 79214920 -73322339 + ORR1B2-int LTR MaLR 568 1097 -412 3 1189 608 38 13 0 chr5 79215060 79215139 -73322120 + (GGAA)n Simple_repeat Simple_repeat 4 83 0 3 1189 347 260 0 0 chr5 79215510 79215583 -73321676 + Lx7 LINE L1 6821 6893 -803 3 1189 1415 192 171 3 chr5 79215584 79215876 -73321383 - ORR1B2 LTR MaLR -24 343 3 3 1189 1450 164 183 14 chr5 79215879 79216247 -73321012 - ORR1B2-int LTR MaLR -203 1589 1099 3 1189 527 222 104 0 chr5 79216247 79216391 -73320868 - L1_Mur2 LINE L1 -6013 699 541 3 1189 252 0 0 0 chr5 79216756 79216784 -73320475 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1189 4848 212 40 43 chr5 79216793 79217391 -73319868 + Lx5 LINE L1 4622 5232 -645 3 1189 7337 73 1 32 chr5 79217391 79218408 -73318851 + L1Md_F2 LINE L1 5587 6571 -11 3 1189 4848 220 35 26 chr5 79218408 79219527 -73317732 + Lx5 LINE L1 5233 6360 -690 3 1189 290 380 30 40 chr5 79219613 79219813 -73317446 + MLT2F LTR ERVL 461 658 -5 3 1189 305 384 89 15 chr5 79219815 79220285 -73316974 + ERVL-E-int LTR ERVL 1322 1826 -3841 3 1189 239 346 13 0 chr5 79221184 79221262 -73315997 - MER67B LTR ERV1 -452 209 131 3 1189 1529 265 5 53 chr5 79221323 79221738 -73315521 - MTD LTR MaLR -24 395 1 3 1189 3999 164 5 1 chr5 79222227 79222899 -73314360 - RLTR33 LTR ERVK -4 674 1 3 1189 3303 206 42 20 chr5 79223341 79223582 -73313677 - RMER6A LTR ERVK 0 756 505 3 1189 801 92 0 0 chr5 79223582 79223702 -73313557 + (TC)n Simple_repeat Simple_repeat 1 120 0 3 1189 3303 206 42 20 chr5 79223702 79224198 -73313061 - RMER6A LTR ERVK -252 504 5 3 1189 21 0 0 0 chr5 79224710 79224731 -73312528 + AT_rich Low_complexity Low_complexity 1 21 0 3 1189 22 88 0 0 chr5 79225246 79225303 -73311956 + AT_rich Low_complexity Low_complexity 1 57 0 3 1189 261 346 50 0 chr5 79225342 79225443 -73311816 + ID_B1 SINE B4 73 178 -46 3 1189 663 351 47 8 chr5 79225695 79225752 -73311507 + MT2A LTR ERVL 198 256 -277 3 1189 3155 34 5 0 chr5 79225752 79226139 -73311120 + L1Md_F2 LINE L1 6194 6582 0 3 1189 663 316 189 7 chr5 79226139 79226372 -73310887 + MT2A LTR ERVL 257 533 0 3 1189 261 0 0 0 chr5 79227094 79227123 -73310136 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1189 27 0 0 0 chr5 79227154 79227181 -73310078 + AT_rich Low_complexity Low_complexity 1 27 0 3 1189 544 245 19 62 chr5 79228150 79228311 -73308948 - Lx9 LINE L1 -299 7345 7192 3 1189 729 144 77 31 chr5 79228324 79228518 -73308741 + Lx9 LINE L1 7441 7643 -1 3 1189 321 275 156 26 chr5 79228530 79228884 -73308375 + L1M3 LINE L1 4994 5393 -747 3 1189 2478 235 20 16 chr5 79228996 79229550 -73307709 - Lx9 LINE L1 -660 6984 6429 3 1189 423 0 0 0 chr5 79229550 79229597 -73307662 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1189 1159 68 0 0 chr5 79229628 79229774 -73307485 + B1_Mm SINE Alu 2 147 0 3 1189 464 278 0 43 chr5 79229782 79229921 -73307338 - Lx9 LINE L1 -1206 6438 6306 3 1189 570 318 55 3 chr5 79230257 79230493 -73306766 - Lx8 LINE L1 -576 6897 6641 3 1189 1764 173 106 17 chr5 79231127 79231486 -73305773 + MTC LTR MaLR 23 413 -8 3 1189 227 200 22 0 chr5 79231503 79231548 -73305711 + B3 SINE B2 129 174 -42 3 1189 21 36 0 0 chr5 79232686 79232714 -73304545 + AT_rich Low_complexity Low_complexity 1 28 0 3 1189 300 75 0 0 chr5 79233431 79233471 -73303788 + HAL1-3A_ME LINE L1 1973 2012 -846 3 1189 633 27 0 0 chr5 79233472 79233547 -73303712 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 1189 308 236 305 43 chr5 79233587 79233751 -73303508 - MLT1A1 LTR MaLR -16 349 143 3 1189 4638 87 52 1 chr5 79234159 79234836 -73302423 - L1_Mus3 LINE L1 -7 6631 5921 3 1189 3487 142 64 0 chr5 79235142 79235707 -73301552 - MT2B LTR ERVL 0 601 1 3 1189 325 299 49 56 chr5 79236659 79236801 -73300458 - MLT1A1 LTR MaLR -267 141 1 3 1189 441 0 0 0 chr5 79237417 79237466 -73299793 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1189 1376 276 39 40 chr5 79237495 79238115 -73299144 + L1_Rod LINE L1 2033 2651 -3196 3 1189 547 37 0 36 chr5 79238150 79238234 -73299025 + (CAAAA)n Simple_repeat Simple_repeat 5 85 0 3 1189 504 255 7 52 chr5 79238248 79238401 -73298858 + B1_Mur2 SINE Alu 3 148 -1 3 1189 213 121 0 0 chr5 79238408 79238441 -73298818 + (CAA)n Simple_repeat Simple_repeat 1 33 0 3 1189 1528 266 56 33 chr5 79238455 79239113 -73298146 - L1_Rod LINE L1 -3824 2023 1351 3 1189 468 125 0 0 chr5 79239116 79239180 -73298079 + Lx6 LINE L1 6815 6878 -582 3 1189 19931 186 41 33 chr5 79239300 79239902 -73297357 - L1_Mur2 LINE L1 -2090 5695 5071 3 1189 230 56 0 27 chr5 79239902 79239939 -73297320 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 3 1189 19931 179 42 32 chr5 79239939 79240295 -73296964 - L1_Mur2 LINE L1 -807 5070 4726 3 1189 180 0 0 0 chr5 79240295 79240315 -73296944 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1189 19931 179 42 32 chr5 79240315 79240408 -73296851 - L1_Mur2 LINE L1 -1152 4725 4632 3 1189 197 33 33 0 chr5 79240408 79240438 -73296821 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1189 19931 179 42 32 chr5 79240438 79240572 -73296687 - L1_Mur2 LINE L1 -1246 4631 4532 3 1189 3536 163 33 14 chr5 79240572 79241200 -73296059 - Lx4A LINE L1 -2 7056 6417 3 1189 19931 179 42 32 chr5 79241200 79243657 -73293602 - L1_Mur2 LINE L1 -1346 4531 2063 3 1189 461 32 16 0 chr5 79243657 79243720 -73293539 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1189 225 0 0 0 chr5 79243720 79243744 -73293515 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 1189 19931 235 75 42 chr5 79243744 79245219 -73292040 - L1_Mur2 LINE L1 -3815 2062 415 3 1189 3801 241 42 18 chr5 79245264 79245698 -73291561 + Lx6 LINE L1 4806 5262 -618 3 1189 216 86 0 0 chr5 79245698 79245733 -73291526 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1189 4506 257 49 20 chr5 79245733 79247415 -73289844 + Lx6 LINE L1 5263 6993 -467 3 1189 21724 136 17 6 chr5 79247417 79251794 -73285465 + L1_Mus3 LINE L1 2184 6614 -24 3 1189 207 0 0 0 chr5 79251800 79251823 -73285436 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1189 798 11 0 0 chr5 79251823 79251913 -73285346 + (GA)n Simple_repeat Simple_repeat 2 92 0 3 1189 1411 307 28 38 chr5 79251920 79252415 -73284844 + Lx6 LINE L1 6970 7459 -1 3 1189 453 36 0 0 chr5 79252442 79252497 -73284762 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1189 891 121 31 108 chr5 79252813 79253007 -73284252 - Lx2A LINE L1 -522 6486 6308 3 1189 2827 155 20 2 chr5 79253004 79253508 -73283751 + Lx2A LINE L1 6464 6976 -32 3 1189 347 97 16 16 chr5 79253509 79253572 -73283687 + Lx2A LINE L1 6937 6999 -9 3 1189 23 0 0 0 chr5 79253786 79253809 -73283450 + AT_rich Low_complexity Low_complexity 1 23 0 3 1189 255 227 0 0 chr5 79253975 79254041 -73283218 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1189 7699 65 13 30 chr5 79254081 79254803 -73282456 + L1_Mm LINE L1 4543 5246 -637 3 1189 402 21 0 0 chr5 79254803 79254850 -73282409 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1189 7699 65 13 30 chr5 79254850 79255189 -73282070 + L1_Mm LINE L1 5247 5585 -298 3 1189 8345 34 0 0 chr5 79255189 79256185 -73281074 + L1Md_T LINE L1 5587 6582 0 3 1189 180 0 0 0 chr5 79256234 79256254 -73281005 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 1189 3725 62 59 2 chr5 79256263 79256768 -73280491 - L1Md_F2 LINE L1 0 6582 6049 3 1189 383 100 14 0 chr5 79257128 79257198 -73280061 + (CA)n Simple_repeat Simple_repeat 2 72 0 3 1189 1186 334 63 31 chr5 79257509 79258244 -73279015 + Lx7 LINE L1 5596 6353 -1343 3 1189 21 0 0 0 chr5 79258750 79258771 -73278488 + AT_rich Low_complexity Low_complexity 1 21 0 3 1189 3628 263 52 31 chr5 79259401 79260399 -73276860 - Lx6 LINE L1 0 7460 6442 3 1189 2974 201 35 3 chr5 79260394 79261056 -73276203 - L1_Mur3 LINE L1 -872 5008 4326 3 1189 365 0 22 0 chr5 79261107 79261152 -73276107 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1189 1545 220 64 20 chr5 79261183 79261591 -73275668 - L1_Mur3 LINE L1 -3852 2028 1603 3 1189 567 248 91 70 chr5 79262224 79262454 -73274805 + Lx7 LINE L1 7180 7414 -282 3 1189 330 26 0 0 chr5 79262461 79262500 -73274759 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1189 309 51 0 0 chr5 79263109 79263148 -73274111 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1189 393 164 0 0 chr5 79263182 79263255 -73274004 + (TA)n Simple_repeat Simple_repeat 1 73 0 4 1189 236 449 39 11 chr5 79263255 79263539 -73273720 - B4A SINE B4 0 292 1 4 1189 292 190 12 12 chr5 79263618 79263703 -73273556 + CT-rich Low_complexity Low_complexity 2 86 0 4 1189 975 129 11 6 chr5 79263705 79263884 -73273375 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 1189 700 207 28 0 chr5 79263902 79264047 -73273212 - B1_Mur4 SINE Alu 0 150 2 4 1189 265 206 76 93 chr5 79264999 79265117 -73272142 - Lx4A LINE L1 0 7058 6943 4 1189 4166 132 12 3 chr5 79265117 79265883 -73271376 + Lx4A LINE L1 5228 6007 -1051 4 1189 197 305 133 31 chr5 79266631 79266729 -73270530 + MIRc SINE MIR 40 147 -121 4 1189 309 151 19 0 chr5 79267122 79267175 -73270084 + HAL1-3A_ME LINE L1 1976 2029 -829 4 1189 234 0 0 0 chr5 79267180 79267206 -73270053 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1189 1097 100 19 0 chr5 79267535 79267695 -73269564 + L1_Mus1 LINE L1 6405 6567 0 4 1189 387 0 0 0 chr5 79267700 79267743 -73269516 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 1189 324 0 0 0 chr5 79268202 79268238 -73269021 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1189 299 159 58 0 chr5 79270008 79270077 -73267182 - Lx2 LINE L1 -1 6996 6924 4 1189 3464 175 40 7 chr5 79270091 79270498 -73266761 + L1_Mur1 LINE L1 4534 4948 -938 4 1189 1084 130 11 16 chr5 79270498 79270685 -73266574 - L1_Mus3 LINE L1 -4 6634 6449 4 1189 3464 175 40 7 chr5 79270685 79270978 -73266281 + L1_Mur1 LINE L1 4949 5257 -629 4 1189 204 309 99 0 chr5 79273595 79273676 -73263583 - L3 LINE CR1 -899 3590 3502 4 1189 25 0 0 0 chr5 79273847 79273872 -73263387 + AT_rich Low_complexity Low_complexity 1 25 0 4 1189 226 18 49 82 chr5 79274111 79274172 -73263087 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 4 1189 1130 123 42 11 chr5 79274978 79275167 -73262092 + B2_Mm2 SINE B2 1 195 0 4 1189 869 126 0 0 chr5 79275177 79275320 -73261939 - Lx LINE L1 -1 6653 6511 4 1189 850 224 40 0 chr5 79275602 79275776 -73261483 - ORR1B2 LTR MaLR -2 365 185 4 1189 1205 290 96 28 chr5 79275790 79276248 -73261011 - Lx6 LINE L1 -27 7433 6945 4 1189 22 0 0 0 chr5 79276459 79276481 -73260778 + AT_rich Low_complexity Low_complexity 1 22 0 4 1189 888 253 2 178 chr5 79278066 79278527 -73258732 + ORR1C2 LTR MaLR 1 380 -4 4 1189 703 195 29 67 chr5 79278673 79278882 -73258377 - Lx7 LINE L1 0 7696 7496 4 1189 376 228 11 11 chr5 79278879 79278972 -73258287 - L1_Mur3 LINE L1 -2908 2972 2880 4 1189 5150 201 47 43 chr5 79278987 79280235 -73257024 - Lx2B LINE L1 -4 6996 5745 4 1189 1180 256 17 17 chr5 79280693 79281042 -73256217 - L1_Mur3 LINE L1 -3000 2880 2532 4 1189 204 289 0 32 chr5 79281067 79281160 -73256099 + T-rich Low_complexity Low_complexity 5 94 0 4 1189 1643 271 22 24 chr5 79281265 79281716 -73255543 + Lx9 LINE L1 6978 7427 -217 4 1189 292 222 0 45 chr5 79281716 79281782 -73255477 + RMER20B LTR ERVK 258 320 -307 4 1189 25 75 0 0 chr5 79281934 79281987 -73255272 + AT_rich Low_complexity Low_complexity 1 53 0 4 1189 1207 227 217 6 chr5 79282838 79283184 -73254075 - MTD LTR MaLR 0 419 1 4 1189 28 48 0 0 chr5 79283285 79283327 -73253932 + AT_rich Low_complexity Low_complexity 1 42 0 4 1189 351 0 0 0 chr5 79283327 79283366 -73253893 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 4 1189 985 126 0 0 chr5 79283366 79283501 -73253758 - B1_Mus2 SINE Alu -12 135 1 4 1189 254 261 14 14 chr5 79283569 79283639 -73253620 + B4 SINE B4 15 84 -208 4 1189 2388 98 185 0 chr5 79283640 79284007 -73253252 + RLTR10C LTR ERVK 1 435 -1 4 1189 659 78 11 0 chr5 79284007 79284097 -73253162 + MMERVK10C-int LTR ERVK 3 93 -7488 4 1189 229 255 0 19 chr5 79284097 79284149 -73253110 + RLTR27 LTR ERVK 222 272 -37 4 1189 988 127 0 7 chr5 79284151 79284302 -73252957 + MMERVK10C-int LTR ERVK 224 373 -7208 4 1189 53381 71 7 19 chr5 79284301 79291402 -73245857 + MMERVK10C-int LTR ERVK 571 7581 0 4 1189 2925 114 9 27 chr5 79291402 79291843 -73245416 + RLTR10C LTR ERVK 1 433 -3 4 1189 217 37 35 69 chr5 79292443 79292501 -73244758 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 4 1189 1097 89 0 7 chr5 79292501 79292648 -73244611 - B1_Mus1 SINE Alu -1 147 2 4 1189 539 15 15 0 chr5 79293122 79293190 -73244069 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 4 1189 634 53 21 0 chr5 79293356 79293451 -73243808 + (TAGA)n Simple_repeat Simple_repeat 1 97 0 4 1189 546 126 536 0 chr5 79293671 79293822 -73243437 - L1_Mm LINE L1 -875 5008 4777 4 1189 2774 90 22 8 chr5 79293838 79294240 -73243019 + L1_Mus3 LINE L1 6220 6627 -11 4 1189 1697 79 0 13 chr5 79294234 79294466 -73242793 + L1Md_F3 LINE L1 6341 6569 -15 4 1189 381 342 77 27 chr5 79294674 79295088 -73242171 - L1MC1 LINE L1 -1 6507 6073 4 1189 292 361 65 27 chr5 79295162 79295532 -73241727 - Lx8 LINE L1 -1 7472 7089 4 1189 299 286 94 36 chr5 79295601 79295793 -73241466 - L1MD LINE L1 -2221 5774 5572 4 1189 523 313 107 31 chr5 79295936 79296533 -73240726 - L1MC1 LINE L1 -913 5408 4777 4 1189 4297 52 0 2 chr5 79296533 79297070 -73240189 - L1Md_F2 LINE L1 0 6582 6047 4 1189 523 313 107 31 chr5 79297070 79297208 -73240051 - L1MC1 LINE L1 -1545 4776 4617 4 1189 363 319 45 0 chr5 79297314 79297471 -73239788 - L1MC1 LINE L1 -4855 1653 1490 4 1189 589 306 39 69 chr5 79297811 79298144 -73239115 - L1MC1 LINE L1 -5682 826 504 4 1190 226 268 12 12 chr5 79298742 79298825 -73238434 + (TCTCTG)n Simple_repeat Simple_repeat 4 86 0 4 1190 24 67 0 0 chr5 79299411 79299456 -73237803 + AT_rich Low_complexity Low_complexity 1 45 0 4 1190 295 337 62 24 chr5 79300252 79300462 -73236797 + L2 LINE L2 2792 3009 -410 4 1190 22 0 0 0 chr5 79300767 79300789 -73236470 + AT_rich Low_complexity Low_complexity 1 22 0 4 1190 23 33 0 0 chr5 79300911 79300941 -73236318 + AT_rich Low_complexity Low_complexity 1 30 0 4 1190 585 0 0 0 chr5 79301454 79301519 -73235740 + (TCCC)n Simple_repeat Simple_repeat 3 67 0 4 1190 1013 145 0 6 chr5 79301810 79301990 -73235269 + CT-rich Low_complexity Low_complexity 2 180 0 4 1190 531 0 0 0 chr5 79301990 79302048 -73235211 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 4 1190 639 114 172 17 chr5 79302053 79302169 -73235090 - B1_Mus1 SINE Alu -13 135 2 4 1190 529 350 19 56 chr5 79302543 79302867 -73234392 - Lx6 LINE L1 0 7460 7149 4 1190 280 64 21 21 chr5 79305220 79305268 -73231991 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1190 363 233 123 0 chr5 79305506 79305579 -73231680 + B1_Mus2 SINE Alu 1 82 -65 4 1190 435 264 55 62 chr5 79305589 79305957 -73231302 + Lx7 LINE L1 7242 7692 -4 4 1190 396 0 0 0 chr5 79305960 79306004 -73231255 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1190 3519 107 27 2 chr5 79306985 79307508 -73229751 + L1_Mus3 LINE L1 6098 6633 -5 4 1190 23 33 0 0 chr5 79307690 79307720 -73229539 + AT_rich Low_complexity Low_complexity 1 30 0 4 1190 490 223 43 69 chr5 79309317 79309562 -73227697 - LTRIS_Mm LTR ERV1 0 507 276 4 1190 355 292 29 7 chr5 79310040 79310178 -73227081 + L1M2 LINE L1 5639 5779 -518 4 1190 438 69 0 0 chr5 79310180 79310238 -73227021 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1190 294 50 0 0 chr5 79310238 79310278 -73226981 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1190 369 0 0 0 chr5 79311196 79311237 -73226022 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1190 459 0 0 0 chr5 79311960 79312011 -73225248 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1190 483 258 31 25 chr5 79312014 79312177 -73225082 + Lx9 LINE L1 7236 7399 -245 4 1190 3684 105 2 24 chr5 79312199 79312743 -73224516 + L1_Mus2 LINE L1 6035 6566 0 4 1190 247 95 143 0 chr5 79312753 79312795 -73224464 - Lx2B LINE L1 -655 6345 6298 4 1190 22 0 0 0 chr5 79312795 79312817 -73224442 + AT_rich Low_complexity Low_complexity 1 22 0 4 1190 280 297 127 0 chr5 79313215 79313333 -73223926 - Lx8 LINE L1 -292 7181 7049 4 1190 226 257 95 20 chr5 79313396 79313543 -73223716 - Lx9 LINE L1 0 7644 7487 4 1190 1319 338 76 20 chr5 79313593 79314332 -73222927 - Lx8 LINE L1 -509 6964 6185 4 1190 623 294 59 25 chr5 79314358 79314742 -73222517 + Lx7 LINE L1 5499 5899 -1797 4 1190 238 197 13 38 chr5 79315740 79315819 -73221440 + A-rich Low_complexity Low_complexity 3 79 0 4 1190 1032 164 124 0 chr5 79316156 79316357 -73220902 + URR1A DNA MER1_type 1 226 0 4 1190 265 353 33 16 chr5 79317164 79317285 -73219974 - Lx8 LINE L1 -365 7108 6986 4 1190 326 68 80 0 chr5 79317436 79317524 -73219735 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 4 1190 1186 321 27 16 chr5 79317683 79318052 -73219207 + MTEb LTR MaLR 1 373 -6 4 1190 1330 330 53 35 chr5 79318052 79318652 -73218607 + MTEb-int LTR MaLR 3 613 -967 4 1190 225 161 143 16 chr5 79318654 79318717 -73218542 - MLT2B2 LTR ERVL 0 562 492 4 1190 250 229 66 88 chr5 79320314 79320405 -73216854 + PB1D10 SINE Alu 26 114 -3 4 1190 237 83 0 0 chr5 79320412 79320448 -73216811 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 4 1190 327 145 31 46 chr5 79320448 79320513 -73216746 + HAL1-3A_ME LINE L1 1976 2039 -819 4 1190 23 54 0 0 chr5 79320568 79320605 -73216654 + AT_rich Low_complexity Low_complexity 1 37 0 4 1190 21 0 0 0 chr5 79320769 79320790 -73216469 + AT_rich Low_complexity Low_complexity 1 21 0 4 1190 408 196 29 122 chr5 79321268 79321506 -73215753 + Lx9 LINE L1 7428 7643 -1 4 1190 25 65 0 0 chr5 79321985 79322031 -73215228 + AT_rich Low_complexity Low_complexity 1 46 0 4 1190 338 345 32 0 chr5 79322167 79322308 -73214951 - B1F2 SINE Alu -2 147 3 4 1190 303 122 0 0 chr5 79322331 79322380 -73214879 + (A)n Simple_repeat Simple_repeat 1 49 0 4 1190 229 355 43 61 chr5 79322536 79322767 -73214492 + MLT1A LTR MaLR 7 233 -141 4 1190 250 282 25 68 chr5 79322815 79322911 -73214348 + RLTR15 LTR ERVK 1 96 -263 4 1190 369 0 0 0 chr5 79322911 79322952 -73214307 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1190 250 282 25 68 chr5 79322952 79322973 -73214286 + RLTR15 LTR ERVK 97 113 -246 4 1190 617 229 43 29 chr5 79323696 79323903 -73213356 - Charlie2b DNA MER1_type -792 1990 1781 4 1190 297 154 60 30 chr5 79324136 79324203 -73213056 + Lx LINE L1 6532 6600 -54 4 1190 2834 131 98 0 chr5 79324846 79325468 -73211791 - Lx LINE L1 -6 6630 5895 4 1190 5161 150 16 5 chr5 79325463 79325983 -73211276 + L1_Mm LINE L1 4220 4737 -1146 5 1190 316 0 0 43 chr5 79325983 79326029 -73211230 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 5 1190 5161 150 16 5 chr5 79326029 79326397 -73210862 + L1_Mm LINE L1 4738 5118 -765 5 1190 374 288 36 7 chr5 79326402 79326542 -73210717 - B1_Mur2 SINE Alu -4 145 2 5 1190 1138 76 0 0 chr5 79326564 79326709 -73210550 - B1_Mus1 SINE Alu -2 146 2 5 1190 3257 89 0 2 chr5 79327147 79327588 -73209671 - L1_Mus2 LINE L1 0 6566 6127 5 1190 1554 35 20 0 chr5 79327588 79327788 -73209471 + L1_Mus2 LINE L1 5919 6122 -444 5 1190 390 91 296 0 chr5 79328412 79328500 -73208759 - L1_Mus4 LINE L1 -7 6629 6516 5 1190 1524 98 0 0 chr5 79328500 79328714 -73208545 + L1_Mus4 LINE L1 6354 6567 0 5 1190 330 297 108 57 chr5 79328719 79328876 -73208383 + MER2 DNA MER2_type 149 313 -32 5 1190 956 246 52 45 chr5 79330169 79330459 -73206800 + MLT1F LTR MaLR 1 292 -256 5 1190 3072 117 0 17 chr5 79330768 79331231 -73206028 + Lx3A LINE L1 6517 6971 -10 5 1190 431 100 14 0 chr5 79331231 79331301 -73205958 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 5 1190 22 70 0 0 chr5 79331459 79331502 -73205757 + AT_rich Low_complexity Low_complexity 1 43 0 5 1190 534 369 15 5 chr5 79331662 79331866 -73205393 - L4 LINE RTE -1051 978 773 5 1190 234 0 0 0 chr5 79332405 79332431 -73204828 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 1190 1824 169 5 90 chr5 79332832 79333226 -73204033 - ORR1B1 LTR MaLR 0 394 3 5 1190 49 0 0 0 chr5 79333632 79333681 -73203578 + AT_rich Low_complexity Low_complexity 1 49 0 5 1190 1143 322 81 10 chr5 79333781 79334301 -73202958 + Lx7 LINE L1 6779 7335 -361 5 1190 990 219 44 40 chr5 79334394 79334622 -73202637 - Lx6 LINE L1 -26 7434 7206 5 1190 2759 108 5 0 chr5 79334622 79335020 -73202239 - MTB LTR MaLR 0 400 1 5 1190 257 292 45 0 chr5 79335593 79335682 -73201577 - Zaphod DNA Tip100 -2695 1336 1244 5 1190 503 324 47 5 chr5 79335690 79335901 -73201358 - MER2 DNA MER2_type -20 325 106 5 1190 398 210 338 24 chr5 79336077 79336239 -73201020 + B3 SINE B2 2 214 -2 5 1190 207 0 0 0 chr5 79336464 79336487 -73200772 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1190 469 333 116 29 chr5 79338179 79338454 -73198805 + MER2 DNA MER2_type 3 301 -44 5 1190 896 276 72 44 chr5 79339624 79339791 -73197468 - Lx9 LINE L1 -186 7458 7291 5 1190 588 14 0 0 chr5 79339791 79339860 -73197399 + (TTC)n Simple_repeat Simple_repeat 2 70 0 5 1190 896 276 72 44 chr5 79339860 79340052 -73197207 - Lx9 LINE L1 -354 7290 7089 5 1190 468 263 63 32 chr5 79340268 79340492 -73196767 + L1MA5A LINE L1 5681 5908 -392 5 1190 270 106 0 0 chr5 79342017 79342064 -73195195 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 5 1190 203 252 9 26 chr5 79342151 79342265 -73194994 + GA-rich Low_complexity Low_complexity 3 114 0 5 1190 1675 29 5 0 chr5 79342430 79342639 -73194620 + L1Md_F2 LINE L1 6373 6582 0 5 1190 201 209 11 65 chr5 79343002 79343094 -73194165 + (TATAA)n Simple_repeat Simple_repeat 5 91 0 5 1190 676 236 40 30 chr5 79344635 79344836 -73192423 - B3 SINE B2 -11 205 3 5 1190 21 0 0 0 chr5 79345548 79345569 -73191690 + AT_rich Low_complexity Low_complexity 1 21 0 5 1190 6690 111 27 27 chr5 79345857 79346989 -73190270 - Lx LINE L1 -7 6647 5519 5 1190 24 0 0 0 chr5 79347159 79347183 -73190076 + AT_rich Low_complexity Low_complexity 1 24 0 5 1190 25 31 0 0 chr5 79347284 79347316 -73189943 + AT_rich Low_complexity Low_complexity 1 32 0 5 1190 317 77 39 0 chr5 79347413 79347465 -73189794 + (TATG)n Simple_repeat Simple_repeat 3 56 0 5 1190 3123 63 5 0 chr5 79347621 79348018 -73189241 + L1_Mus1 LINE L1 6169 6567 0 5 1190 425 250 177 0 chr5 79348344 79348517 -73188742 + MTD LTR MaLR 3 206 -213 5 1190 1166 154 136 0 chr5 79348518 79348739 -73188520 - Lx5 LINE L1 -1026 6024 5774 5 1190 1994 249 67 14 chr5 79348736 79349448 -73187811 + Lx4B LINE L1 6258 6998 -2 5 1190 3461 225 8 27 chr5 79349456 79350234 -73187025 - Lx5 LINE L1 -101 5776 5014 5 1190 275 262 0 0 chr5 79350242 79350303 -73186956 + MTD LTR MaLR 359 419 0 5 1190 22 35 0 0 chr5 79351255 79351284 -73185975 + AT_rich Low_complexity Low_complexity 1 29 0 5 1190 462 18 0 0 chr5 79351594 79351649 -73185610 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1190 2599 238 90 37 chr5 79351651 79352240 -73185019 - Lx9 LINE L1 -189 7455 6833 5 1190 387 0 0 0 chr5 79352240 79352283 -73184976 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1190 2599 238 90 37 chr5 79352283 79352474 -73184785 - Lx9 LINE L1 -812 6832 6634 5 1190 852 349 31 22 chr5 79352536 79353233 -73184026 - L1_Rod LINE L1 -6681 491 1 5 1190 1161 126 16 0 chr5 79354612 79354794 -73182465 + B2_Mm2 SINE B2 1 185 -10 5 1190 234 0 0 0 chr5 79354796 79354822 -73182437 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1190 243 204 20 20 chr5 79354827 79354877 -73182382 + MER76 LTR ERVL 64 113 -578 5 1190 396 147 0 39 chr5 79355454 79355532 -73181727 - Lx2 LINE L1 -973 6024 5950 5 1190 2173 159 12 39 chr5 79355516 79355928 -73181331 + Lx2B LINE L1 6580 6980 -20 5 1190 186 208 0 0 chr5 79356234 79356282 -73180977 + CT-rich Low_complexity Low_complexity 1 48 0 5 1190 349 344 145 31 chr5 79356296 79356565 -73180694 + MLT2B3 LTR ERVL 400 671 -46 5 1190 423 38 0 0 chr5 79356988 79357041 -73180218 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1190 22 70 0 0 chr5 79357513 79357556 -73179703 + AT_rich Low_complexity Low_complexity 1 43 0 5 1190 26 62 0 15 chr5 79357576 79357608 -73179651 + AT_rich Low_complexity Low_complexity 1 32 0 5 1190 1352 65 11 0 chr5 79357608 79357793 -73179466 - L1_Mus1 LINE L1 0 6567 6381 5 1190 26 62 0 15 chr5 79357793 79357825 -73179434 + AT_rich Low_complexity Low_complexity 1 32 0 5 1190 480 18 0 0 chr5 79358055 79358112 -73179147 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1190 21 0 0 0 chr5 79358329 79358350 -73178909 + AT_rich Low_complexity Low_complexity 1 21 0 5 1190 547 393 33 0 chr5 79359083 79359327 -73177932 - MLT1A LTR MaLR -119 255 4 5 1190 3430 142 137 2 chr5 79359695 79360280 -73176979 - Lx LINE L1 -6 6648 5985 5 1190 291 324 43 18 chr5 79360734 79360897 -73176362 - MLT1C LTR MaLR -9 496 291 5 1190 11682 82 21 69 chr5 79361148 79363041 -73174218 + RLTR22_Mus LTR ERVK 1 1802 -6 5 1190 23 101 0 0 chr5 79363308 79363387 -73173872 + AT_rich Low_complexity Low_complexity 1 79 0 5 1190 305 174 0 0 chr5 79364061 79364107 -73173152 + HAL1-3A_ME LINE L1 1975 2020 -838 5 1190 1513 172 51 14 chr5 79364290 79364584 -73172675 + Lx3C LINE L1 6491 6795 -181 5 1190 418 196 29 0 chr5 79365778 79365880 -73171379 + Lx9 LINE L1 7530 7634 -10 5 1190 368 40 0 20 chr5 79366289 79366340 -73170919 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1190 197 218 250 52 chr5 79367243 79367359 -73169900 + L4 LINE RTE 322 460 -1569 5 1190 622 349 31 24 chr5 79368074 79368365 -73168894 + MTEb LTR MaLR 36 328 -51 5 1190 201 175 17 34 chr5 79368627 79368686 -73168573 + (TTA)n Simple_repeat Simple_repeat 1 58 0 5 1190 255 292 70 35 chr5 79368862 79369004 -73168255 + L1M2 LINE L1 5339 5485 -815 5 1190 939 223 85 38 chr5 79368997 79369337 -73167922 + Lx9 LINE L1 7288 7643 -1 5 1190 301 224 40 12 chr5 79369349 79369471 -73167788 + L1M2 LINE L1 5485 5613 -687 5 1190 194 0 39 0 chr5 79369712 79369738 -73167521 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1190 1119 70 7 0 chr5 79369739 79369882 -73167377 - B1_Mus1 SINE Alu -3 145 2 5 1190 333 0 0 0 chr5 79369995 79370032 -73167227 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1190 203 136 45 0 chr5 79370103 79370147 -73167112 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 5 1190 250 400 47 53 chr5 79370843 79371033 -73166226 - MER21B LTR ERV1 -589 274 86 5 1190 504 117 0 0 chr5 79371439 79371516 -73165743 + (TC)n Simple_repeat Simple_repeat 1 77 0 5 1190 949 67 82 7 chr5 79371517 79371652 -73165607 - B1_Mm SINE Alu -1 146 2 5 1190 304 281 50 36 chr5 79372216 79372356 -73164903 - L1MB8 LINE L1 -250 5928 5787 5 1190 2104 111 167 0 chr5 79372360 79372701 -73164558 + MTB LTR MaLR 1 398 -2 5 1190 5007 139 26 12 chr5 79375006 79375858 -73161401 - Lx3_Mus LINE L1 -1 7008 6145 5 1190 265 222 0 0 chr5 79375859 79375913 -73161346 - Lx3_Mus LINE L1 -964 6045 5992 5 1190 711 229 0 0 chr5 79375957 79376097 -73161162 - B1_Mus1 SINE Alu -8 140 1 5 1190 255 340 78 26 chr5 79376115 79376269 -73160990 + MER5A DNA MER1_type 2 163 -26 5 1190 319 248 30 10 chr5 79376763 79376887 -73160372 - L1_Rod LINE L1 -783 5517 5328 5 1190 7365 86 5 38 chr5 79376889 79378017 -73159242 + L1_Mus3 LINE L1 5548 6638 0 5 1190 1060 102 0 0 chr5 79378464 79378611 -73158648 - B1_Mm SINE Alu 0 147 1 5 1190 227 243 104 50 chr5 79379159 79379341 -73157918 - Lx7 LINE L1 -22 7674 7483 5 1190 691 250 20 30 chr5 79379358 79379556 -73157703 - Lx7 LINE L1 -286 7410 7215 5 1190 291 396 34 20 chr5 79380159 79380306 -73156953 - LTR16A LTR ERVL -286 165 17 5 1190 263 373 8 8 chr5 79380439 79380558 -73156701 + B3A SINE B2 1 119 -79 5 1190 405 0 0 0 chr5 79380583 79380628 -73156631 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1190 23 0 0 0 chr5 79381014 79381037 -73156222 + AT_rich Low_complexity Low_complexity 1 23 0 5 1190 23 0 0 0 chr5 79381108 79381131 -73156128 + AT_rich Low_complexity Low_complexity 1 23 0 5 1190 769 377 133 36 chr5 79381494 79382270 -73154989 + MLT1A1-int LTR MaLR 882 1732 -3 5 1190 498 325 78 78 chr5 79382277 79382575 -73154684 + MLT1A1 LTR MaLR 13 305 -103 5 1190 252 86 0 0 chr5 79382575 79382610 -73154649 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1190 498 325 78 78 chr5 79382610 79382695 -73154564 + MLT1A1 LTR MaLR 306 396 -12 5 1190 225 326 75 11 chr5 79382809 79382902 -73154357 - MER45A DNA Tip100 -29 149 51 5 1190 26 74 0 0 chr5 79383529 79383583 -73153676 + AT_rich Low_complexity Low_complexity 1 54 0 5 1190 1196 154 20 10 chr5 79384256 79384459 -73152800 - ORR1A4 LTR MaLR -8 321 117 5 1190 399 343 0 14 chr5 79384459 79384601 -73152658 - Lx5 LINE L1 -418 6632 6493 5 1190 235 104 0 40 chr5 79384679 79384729 -73152530 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 6 1190 1771 264 68 67 chr5 79384729 79384810 -73152449 - Lx6 LINE L1 -1 7459 7371 6 1190 1118 50 0 0 chr5 79384810 79384951 -73152308 - B1_Mus1 SINE Alu -6 142 2 6 1190 1771 264 68 67 chr5 79384951 79385526 -73151733 - Lx6 LINE L1 -90 7370 6803 6 1190 1139 142 29 19 chr5 79385733 79385941 -73151318 + Lx LINE L1 6442 6651 -3 6 1190 243 331 164 8 chr5 79386839 79386973 -73150286 - MLT2B4 LTR ERVL -10 546 392 6 1190 917 288 19 24 chr5 79387187 79387564 -73149695 - L1MD LINE L1 -2255 5740 5366 6 1190 239 308 11 0 chr5 79387620 79387711 -73149548 + (TG)n Simple_repeat Simple_repeat 2 93 0 6 1190 1373 39 0 17 chr5 79387806 79387987 -73149272 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 6 1190 584 143 9 0 chr5 79388002 79388114 -73149145 + (TA)n Simple_repeat Simple_repeat 2 114 0 6 1190 459 0 0 0 chr5 79388448 79388499 -73148760 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1190 216 322 0 11 chr5 79388756 79388844 -73148415 + GA-rich Low_complexity Low_complexity 2 88 0 6 1190 2844 202 82 24 chr5 79389263 79389943 -73147316 + RMER6D LTR ERVK 1 720 0 6 1190 29 0 0 0 chr5 79390016 79390045 -73147214 + AT_rich Low_complexity Low_complexity 1 29 0 6 1190 2601 181 55 11 chr5 79390366 79390908 -73146351 + Lx2 LINE L1 6432 6997 0 6 1190 21 0 0 0 chr5 79390955 79390976 -73146283 + AT_rich Low_complexity Low_complexity 1 21 0 6 1190 424 316 15 7 chr5 79391066 79391203 -73146056 - B1_Mur3 SINE Alu -7 142 5 6 1190 297 0 0 0 chr5 79391393 79391426 -73145833 + (TC)n Simple_repeat Simple_repeat 2 34 0 6 1190 5498 123 33 22 chr5 79391438 79392341 -73144918 - Lx3A LINE L1 -45 6936 6024 6 1190 33 85 0 0 chr5 79393112 79393194 -73144065 + AT_rich Low_complexity Low_complexity 1 82 0 6 1190 35 71 0 0 chr5 79393890 79393960 -73143299 + AT_rich Low_complexity Low_complexity 1 70 0 6 1190 6781 68 14 13 chr5 79394025 79394953 -73142306 - RLTR13B3 LTR ERVK 0 929 1 6 1190 254 314 6 50 chr5 79394959 79395120 -73142139 + GA-rich Low_complexity Low_complexity 4 157 0 6 1190 25 31 0 0 chr5 79395313 79395345 -73141914 + AT_rich Low_complexity Low_complexity 1 32 0 6 1190 201 138 0 0 chr5 79396200 79396229 -73141030 + (CATATA)n Simple_repeat Simple_repeat 1 29 0 6 1190 279 343 9 0 chr5 79396782 79396887 -73140372 + Lx8 LINE L1 7016 7121 -352 6 1190 468 51 0 0 chr5 79396891 79396950 -73140309 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1190 584 0 28 0 chr5 79397066 79397137 -73140122 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 6 1190 207 0 0 0 chr5 79397487 79397510 -73139749 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1190 2876 184 36 27 chr5 79397677 79398235 -73139024 - RLTR12A LTR ERVK -4 564 2 6 1190 264 391 41 53 chr5 79398925 79399095 -73138164 + B3A SINE B2 1 168 -30 6 1190 429 129 0 0 chr5 79399960 79400030 -73137229 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 1190 279 0 0 0 chr5 79400030 79400060 -73137199 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1190 2095 127 3 6 chr5 79400135 79400467 -73136792 + Lx LINE L1 6320 6650 -4 6 1190 258 206 0 0 chr5 79400607 79400670 -73136589 + T-rich Low_complexity Low_complexity 1 63 0 6 1190 935 105 0 53 chr5 79400675 79400826 -73136433 - B1_Mus1 SINE Alu -5 143 1 6 1190 582 295 0 20 chr5 79400958 79401110 -73136149 + B1_Mur4 SINE Alu 1 149 -1 6 1190 8380 125 1 36 chr5 79401431 79401982 -73135277 + Lx3A LINE L1 5400 5906 -1075 6 1190 180 0 0 0 chr5 79401982 79402002 -73135257 + (TAA)n Simple_repeat Simple_repeat 2 21 0 6 1190 8380 132 6 47 chr5 79402002 79403094 -73134165 + Lx3A LINE L1 5907 6975 -6 6 1190 1316 220 62 135 chr5 79403226 79403803 -73133456 + RLTR40 LTR ERVK 219 753 -64 6 1190 3256 68 0 0 chr5 79403813 79404224 -73133035 - L1_Mus1 LINE L1 -1 6566 6156 6 1190 216 280 172 0 chr5 79404631 79404724 -73132535 + PB1D7 SINE Alu 12 120 0 6 1190 2072 85 125 25 chr5 79404827 79405187 -73132072 + Lx LINE L1 6259 6654 0 6 1190 407 341 55 63 chr5 79405729 79405967 -73131292 + LFSINE_Vert SINE SINE 1 236 -223 6 1190 2388 91 12 0 chr5 79407649 79407991 -73129268 - MTB LTR MaLR -54 346 1 6 1190 1104 82 0 20 chr5 79408269 79408419 -73128840 - B1_Mm SINE Alu 0 147 1 6 1190 302 301 19 0 chr5 79408757 79408860 -73128399 - Lx9 LINE L1 -447 7197 7093 6 1190 291 196 94 38 chr5 79408889 79408931 -73128328 + Lx9 LINE L1 7531 7570 -74 6 1190 486 0 0 0 chr5 79408931 79408985 -73128274 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1190 291 196 94 38 chr5 79408985 79409048 -73128211 + Lx9 LINE L1 7571 7642 -2 6 1190 377 229 12 12 chr5 79409231 79409315 -73127944 + URR1B DNA MER1_type 1 84 -141 6 1190 955 88 66 0 chr5 79409409 79409546 -73127713 + B1_Mm SINE Alu 1 146 -1 6 1190 180 77 0 0 chr5 79409548 79409574 -73127685 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1190 3741 76 0 0 chr5 79409611 79410086 -73127173 - L1_Mus1 LINE L1 0 6567 6093 6 1190 980 61 0 8 chr5 79410086 79410219 -73127040 + L1_Mus1 LINE L1 5902 6033 -534 6 1190 443 161 74 0 chr5 79410657 79410738 -73126521 - B1_Mur4 SINE Alu -1 149 63 6 1190 331 289 12 24 chr5 79410752 79410828 -73126431 - RLTR20B1 LTR ERVK -15 548 474 6 1190 3288 55 0 5 chr5 79410828 79411251 -73126008 + L1Md_F2 LINE L1 6162 6582 0 6 1190 617 241 133 20 chr5 79411321 79411361 -73125898 + Lx6 LINE L1 7235 7277 -183 6 1190 471 18 0 0 chr5 79411361 79411417 -73125842 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1190 617 241 133 20 chr5 79411417 79411579 -73125680 + Lx6 LINE L1 7278 7459 -1 6 1190 1216 218 30 29 chr5 79411608 79411981 -73125278 - RLTR20B1 LTR ERVK -85 478 2 6 1190 644 184 83 30 chr5 79411983 79412151 -73125108 - MYSERV16_I-int LTR ERVK -1 2325 2149 6 1190 26 88 0 0 chr5 79412258 79412326 -73124933 + AT_rich Low_complexity Low_complexity 1 68 0 6 1190 220 286 70 14 chr5 79412343 79412414 -73124845 + B1F SINE Alu 9 83 -66 6 1190 31 58 0 0 chr5 79412596 79412648 -73124611 + AT_rich Low_complexity Low_complexity 1 52 0 6 1190 3937 69 8 2 chr5 79412774 79413282 -73123977 + L1_Mus1 LINE L1 6057 6567 0 6 1190 856 108 0 14 chr5 79413381 79413522 -73123737 + (GAAAA)n Simple_repeat Simple_repeat 2 140 0 6 1190 1568 141 61 4 chr5 79413522 79413793 -73123466 + Lx2A LINE L1 6717 7004 -4 6 1190 665 319 72 8 chr5 79413904 79414166 -73123093 - B4A SINE B4 -12 280 2 6 1190 285 29 0 0 chr5 79414181 79414215 -73123044 + (CCA)n Simple_repeat Simple_repeat 1 34 0 6 1190 525 55 0 0 chr5 79414217 79414290 -73122969 + (CAA)n Simple_repeat Simple_repeat 3 75 0 6 1190 25 31 0 0 chr5 79414875 79414907 -73122352 + AT_rich Low_complexity Low_complexity 1 32 0 6 1190 513 0 0 0 chr5 79415784 79415841 -73121418 + (TAG)n Simple_repeat Simple_repeat 3 59 0 6 1190 713 120 0 33 chr5 79415850 79415964 -73121295 + B1_Mm SINE Alu 28 137 -10 6 1190 363 23 0 0 chr5 79415964 79416008 -73121251 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1190 189 0 0 0 chr5 79416449 79416470 -73120789 + (GTTTG)n Simple_repeat Simple_repeat 3 23 0 6 1190 2706 126 44 31 chr5 79416470 79416920 -73120339 - Lx2 LINE L1 -13 6984 6529 6 1190 1254 114 0 0 chr5 79416920 79417096 -73120163 + Lx2 LINE L1 5831 6006 -991 6 1190 261 224 69 0 chr5 79418951 79419009 -73118250 + LTR88c LTR Genie? 1 62 -800 6 1190 3423 36 43 9 chr5 79419341 79419763 -73117496 + RLTR10C LTR ERVK 1 436 0 6 1190 1026 114 107 11 chr5 79421039 79421216 -73116043 - B2_Mm2 SINE B2 -1 194 1 6 1190 41 90 0 0 chr5 79422916 79423027 -73114232 + AT_rich Low_complexity Low_complexity 1 111 0 6 1190 189 74 0 0 chr5 79423332 79423359 -73113900 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6 1190 1750 153 0 0 chr5 79423900 79424181 -73113078 - Lx2 LINE L1 -293 6704 6424 6 1190 1867 125 7 0 chr5 79424181 79424469 -73112790 + Lx2 LINE L1 6708 6997 0 6 1190 2434 82 3 0 chr5 79424716 79425088 -73112171 - L1_Mus1 LINE L1 0 6567 6237 6 1190 984 54 19 57 chr5 79425087 79425245 -73112014 - L1Md_F3 LINE L1 0 6584 6433 6 1190 560 100 0 0 chr5 79425245 79425325 -73111934 - L1_Mus1 LINE L1 -251 6316 6237 6 148 36030 58 2 7 chr5 79425333 79430940 -73106319 - L1Md_F2 LINE L1 -4 6578 1014 6 1191 1989 127 26 3 chr5 79430952 79431261 -73105998 - IAPLTR2b LTR ERVK -11 316 1 6 1191 4728 117 3 0 chr5 79431261 79431954 -73105305 - L1Md_F2 LINE L1 -5621 995 301 6 1191 22 0 0 0 chr5 79433301 79433323 -73103936 + AT_rich Low_complexity Low_complexity 1 22 0 6 1191 27 0 0 0 chr5 79433885 79433912 -73103347 + AT_rich Low_complexity Low_complexity 1 27 0 6 1191 27 29 0 0 chr5 79433962 79433996 -73103263 + AT_rich Low_complexity Low_complexity 1 34 0 6 1191 333 276 10 10 chr5 79434019 79434118 -73103141 + (TATG)n Simple_repeat Simple_repeat 2 100 0 6 1191 907 211 140 12 chr5 79434242 79434567 -73102692 - Lx2B LINE L1 -258 6742 6323 6 1191 1084 116 0 0 chr5 79434580 79434727 -73102532 + B1_Mus2 SINE Alu 1 147 0 6 1191 285 112 49 12 chr5 79434727 79434808 -73102451 + A-rich Low_complexity Low_complexity 1 84 0 6 1191 673 231 44 20 chr5 79434821 79435041 -73102218 - Lx3C LINE L1 -632 6344 6126 6 1191 615 27 0 0 chr5 79435272 79435345 -73101914 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 1191 473 283 43 68 chr5 79435693 79435823 -73101436 + ORR1D2 LTR MaLR 209 335 -35 6 1191 2931 91 2 5 chr5 79435823 79436223 -73101036 + MTB LTR MaLR 1 399 -1 6 1191 473 283 43 68 chr5 79436223 79436255 -73101004 + ORR1D2 LTR MaLR 336 367 -3 6 1191 939 280 39 48 chr5 79436291 79436647 -73100612 + ORR1D2-int LTR MaLR 157 509 -861 6 1191 17334 126 30 5 chr5 79436665 79440202 -73097057 + L1_Mus1 LINE L1 159 3906 -1980 6 1191 7373 85 2 3 chr5 79440200 79441387 -73095872 + L1_Mus1 LINE L1 5384 6569 -1 6 1191 32 57 0 0 chr5 79441387 79441440 -73095819 + AT_rich Low_complexity Low_complexity 1 53 0 6 1191 5251 136 14 2 chr5 79441440 79442253 -73095006 + Lx LINE L1 5832 6653 -1 6 1191 831 329 8 4 chr5 79442259 79442512 -73094747 + ORR1D2-int LTR MaLR 879 1132 -238 6 1191 210 37 0 0 chr5 79442512 79442539 -73094720 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6 1191 263 250 44 0 chr5 79442551 79442619 -73094640 + ORR1D2-int LTR MaLR 1300 1370 0 6 1191 703 277 198 35 chr5 79442648 79443082 -73094177 + Lx8 LINE L1 6346 6850 -623 6 1191 7914 113 15 22 chr5 79443608 79444717 -73092542 - Lx3_Mus LINE L1 0 7009 5908 7 1191 705 82 0 0 chr5 79444717 79444827 -73092432 + (TC)n Simple_repeat Simple_repeat 2 111 0 7 1191 7914 267 27 96 chr5 79444827 79444959 -73092300 - Lx3_Mus LINE L1 -1090 5907 5792 7 1191 838 86 0 0 chr5 79444959 79445076 -73092183 - B1_Mm SINE Alu -30 117 1 7 1191 7914 267 27 96 chr5 79445076 79445312 -73091947 - Lx3_Mus LINE L1 -1090 5791 5582 7 1191 29 70 0 0 chr5 79445831 79445888 -73091371 + AT_rich Low_complexity Low_complexity 1 57 0 7 1191 201 225 14 27 chr5 79446303 79446376 -73090883 + (CAAA)n Simple_repeat Simple_repeat 4 75 0 7 1191 22 56 0 0 chr5 79447295 79447331 -73089928 + AT_rich Low_complexity Low_complexity 1 36 0 7 1191 334 150 45 38 chr5 79447470 79447602 -73089657 + (CAGAGA)n Simple_repeat Simple_repeat 6 138 0 7 1191 547 233 0 16 chr5 79448486 79448669 -73088590 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 7 1191 2053 103 11 68 chr5 79448802 79449157 -73088102 + IAPLTR1a_Mm LTR ERVK 1 335 -2 7 1191 3390 63 4 27 chr5 79449169 79449889 -73087370 + IAPEz-int LTR ERVK 35 662 -5819 7 1191 433 82 0 32 chr5 79449889 79449952 -73087307 + IAPEz-int LTR ERVK 1359 1419 -5062 7 1191 1828 115 4 4 chr5 79449941 79450203 -73087056 + IAPEz-int LTR ERVK 2236 2497 -5183 7 1191 894 89 24 0 chr5 79450200 79450323 -73086936 + IAPEz-int LTR ERVK 4785 4910 -2770 7 1191 26371 13 3 0 chr5 79450323 79453270 -73083989 + IAPEz-int LTR ERVK 3525 6481 0 7 1191 2053 103 11 68 chr5 79453270 79453625 -73083634 + IAPLTR1a_Mm LTR ERVK 1 335 -2 7 1191 420 20 0 0 chr5 79453887 79453936 -73083323 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1191 586 320 88 46 chr5 79453996 79455025 -73082234 + L1MA8 LINE L1 5211 6286 -5 7 1191 931 309 45 44 chr5 79455173 79455885 -73081374 + Lx8 LINE L1 5325 6065 -1408 7 1191 621 183 13 7 chr5 79455991 79456145 -73081114 + (TA)n Simple_repeat Simple_repeat 2 156 0 7 1191 2878 180 40 75 chr5 79456146 79456789 -73080470 + RLTR26 LTR ERVK 19 639 -3 7 1191 240 111 0 0 chr5 79456790 79456826 -73080433 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1191 304 245 12 0 chr5 79458257 79458345 -73078914 + Lx3C LINE L1 682 833 -6151 7 1191 917 231 157 56 chr5 79458469 79458571 -73078688 + Lx3C LINE L1 687 830 -6154 7 1191 1115 88 0 0 chr5 79458571 79458719 -73078540 + B1_Mus1 SINE Alu 1 148 0 7 1191 917 231 157 56 chr5 79458719 79458973 -73078286 + Lx3C LINE L1 831 1079 -5905 7 1191 1175 106 6 6 chr5 79458956 79459136 -73078123 + Lx3C LINE L1 4773 4952 -934 7 1191 4735 120 15 4 chr5 79459133 79460054 -73077205 + Lx3C LINE L1 5176 6111 -865 7 1191 278 139 0 0 chr5 79460068 79460111 -73077148 - Lx6 LINE L1 -215 7245 7203 7 1191 562 323 115 37 chr5 79460155 79460451 -73076808 + Lx5 LINE L1 6484 6802 -248 7 1191 1210 277 11 19 chr5 79460528 79460903 -73076356 + ORR1D1 LTR MaLR 1 372 -2 7 1191 4197 43 2 6 chr5 79460996 79461515 -73075744 - L1Md_F2 LINE L1 0 6582 6066 7 1191 35389 35 0 0 chr5 79461896 79467324 -73069935 + L1Md_T LINE L1 65 5589 -297 7 1191 8960 6 0 0 chr5 79467324 79468368 -73068891 + L1Md_T LINE L1 5590 6585 0 7 1191 1009 83 0 0 chr5 79469629 79469762 -73067497 + B1_Mus2 SINE Alu 3 135 -12 7 1191 21 36 0 0 chr5 79470401 79470429 -73066830 + AT_rich Low_complexity Low_complexity 1 28 0 7 1191 25 75 0 0 chr5 79470469 79470522 -73066737 + AT_rich Low_complexity Low_complexity 1 53 0 7 1191 276 208 20 10 chr5 79470531 79470633 -73066626 + (TA)n Simple_repeat Simple_repeat 1 103 0 7 1191 240 35 0 0 chr5 79470904 79470933 -73066326 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1191 705 132 0 96 chr5 79471264 79471431 -73065828 + L1_Mur2 LINE L1 2001 2151 -3726 7 1191 1062 88 0 20 chr5 79471431 79471581 -73065678 + B1_Mus1 SINE Alu 2 148 0 7 1191 323 60 0 77 chr5 79471581 79471672 -73065587 + (CAAAA)n Simple_repeat Simple_repeat 1 84 0 7 1191 2180 125 11 22 chr5 79471675 79472036 -73065223 + L1_Mur2 LINE L1 2140 2496 -3381 7 1191 352 188 175 19 chr5 79472197 79472300 -73064959 + RLTR9A LTR ERVK 1 119 -249 7 1191 537 180 0 32 chr5 79472305 79472431 -73064828 + RLTR9A LTR ERVK 247 368 0 7 1191 705 118 0 0 chr5 79472456 79472566 -73064693 + (CA)n Simple_repeat Simple_repeat 2 111 0 7 1191 21 0 0 0 chr5 79472570 79472591 -73064668 + AT_rich Low_complexity Low_complexity 1 21 0 7 1191 1049 94 0 0 chr5 79472891 79473029 -73064230 + B1_Mus2 SINE Alu 2 139 -8 7 1191 21 0 0 0 chr5 79473120 79473141 -73064118 + AT_rich Low_complexity Low_complexity 1 21 0 7 1191 206 234 0 45 chr5 79475628 79475695 -73061564 + G-rich Low_complexity Low_complexity 4 67 0 7 1191 227 167 0 0 chr5 79475719 79475755 -73061504 + RMER6C LTR ERVK 1 36 -684 7 1191 417 228 0 25 chr5 79475769 79475850 -73061409 + MT2B LTR ERVL 181 259 -342 7 1191 3019 21 2 120 chr5 79475874 79476316 -73060943 - RLTR10 LTR ERVK 0 390 1 7 1191 11202 107 41 37 chr5 79476318 79478255 -73059004 - RLTR10-int LTR ERVK -3 1984 41 7 1191 3019 21 2 120 chr5 79478268 79478710 -73058549 - RLTR10 LTR ERVK 0 390 1 7 1191 263 272 6 60 chr5 79478711 79478804 -73058455 + B1_Mus2 SINE Alu 3 85 -35 7 1191 1446 176 25 75 chr5 79478785 79479186 -73058073 + RMER6C LTR ERVK 346 693 -63 7 1191 207 25 24 48 chr5 79479189 79479231 -73058028 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1191 576 111 18 9 chr5 79479474 79479583 -73057676 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 7 1191 3114 12 0 0 chr5 79479722 79480068 -73057191 - ORR1A0 LTR MaLR 0 346 1 7 1191 21 0 0 0 chr5 79480666 79480687 -73056572 + AT_rich Low_complexity Low_complexity 1 21 0 7 1191 1536 202 42 21 chr5 79481280 79481721 -73055538 - RLTR20A LTR ERVK -53 488 4 7 1191 33 25 0 0 chr5 79481721 79481761 -73055498 + AT_rich Low_complexity Low_complexity 1 40 0 7 1191 216 0 0 0 chr5 79482359 79482383 -73054876 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1191 24 32 0 0 chr5 79482594 79482625 -73054634 + AT_rich Low_complexity Low_complexity 1 31 0 7 1191 1164 221 51 45 chr5 79482625 79482937 -73054322 - Lx4A LINE L1 -7 7051 6738 7 1191 757 144 7 0 chr5 79482911 79483050 -73054209 + L1_Mur2 LINE L1 1838 1977 -3900 7 1191 7407 131 53 97 chr5 79483050 79483765 -73053494 + L1_Mur2 LINE L1 1877 2458 -3419 7 1191 228 35 0 0 chr5 79483765 79483794 -73053465 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1191 7407 131 53 97 chr5 79483794 79484758 -73052501 + L1_Mur2 LINE L1 2459 3482 -2395 7 1191 228 67 0 0 chr5 79484760 79484790 -73052469 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 7 1191 674 273 85 50 chr5 79484822 79485154 -73052105 + MTD LTR MaLR 25 419 0 7 1191 5113 47 2 0 chr5 79485540 79486163 -73051096 + L1Md_T LINE L1 5959 6582 0 7 1191 341 312 94 23 chr5 79487133 79487261 -73049998 - ID_B1 SINE B4 -2 222 86 7 1191 572 284 47 28 chr5 79489198 79489412 -73047847 + RLTR45 LTR ERVK 265 482 0 7 1191 453 79 51 34 chr5 79489543 79489661 -73047598 + T-rich Low_complexity Low_complexity 2 121 0 7 1191 372 287 96 20 chr5 79489873 79490072 -73047187 - B3 SINE B2 0 216 3 7 1191 517 294 21 72 chr5 79490104 79490298 -73046961 - B3A SINE B2 0 198 15 7 1191 3738 221 19 4 chr5 79490328 79491111 -73046148 - Lx5 LINE L1 -11 7039 6245 7 1191 349 115 0 0 chr5 79491115 79491167 -73046092 + U2 snRNA snRNA 2 53 -135 7 1191 976 86 0 0 chr5 79491345 79491473 -73045786 + B2_Mm2 SINE B2 3 130 -65 7 1191 405 0 0 0 chr5 79491481 79491526 -73045733 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 7 1191 21 0 0 0 chr5 79491616 79491637 -73045622 + AT_rich Low_complexity Low_complexity 1 21 0 7 1191 556 252 24 61 chr5 79493613 79493778 -73043481 - ORR1D2 LTR MaLR -7 363 205 7 1191 537 339 112 16 chr5 79493783 79494095 -73043164 - Lx8 LINE L1 -752 6721 6380 7 1191 785 249 52 0 chr5 79494105 79494298 -73042961 + RLTR18B LTR ERVK 1 203 -309 7 1191 909 248 28 18 chr5 79494345 79494563 -73042696 + RLTR18B LTR ERVK 289 508 -4 7 1191 1349 286 51 8 chr5 79494647 79495038 -73042221 + MTD LTR MaLR 5 412 -7 7 1191 311 247 25 0 chr5 79495081 79495162 -73042097 - Lx8 LINE L1 -1207 6266 6184 7 1191 211 343 118 29 chr5 79495204 79495306 -73041953 + MIRm SINE MIR 116 226 -50 7 1191 26 82 0 0 chr5 79496306 79496367 -73040892 + AT_rich Low_complexity Low_complexity 1 61 0 7 1191 340 368 77 39 chr5 79496446 79496627 -73040632 - LTR16C LTR ERVL -62 427 240 7 1191 340 72 18 18 chr5 79496956 79497013 -73040246 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 1191 313 346 102 44 chr5 79497104 79497397 -73039862 + ORR1E LTR MaLR 39 348 -11 7 1191 768 376 115 26 chr5 79497473 79498607 -73038652 - L2 LINE L2 -338 3081 1847 7 1191 183 375 85 8 chr5 79500307 79500436 -73036823 - MIR SINE MIR -115 147 9 1 1191 2456 90 8 11 chr5 79500521 79500880 -73036379 + Lx3_Mus LINE L1 6650 7007 -2 2 1191 431 297 78 8 chr5 79501313 79501442 -73035817 + ID_B1 SINE B4 87 224 0 3 1191 292 259 14 36 chr5 79501520 79501660 -73035599 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 4 1191 28 91 0 0 chr5 79503019 79503096 -73034163 + AT_rich Low_complexity Low_complexity 1 77 0 5 1191 44 35 0 0 chr5 79504134 79504192 -73033067 + AT_rich Low_complexity Low_complexity 1 58 0 6 1191 5600 145 44 43 chr5 79504231 79505322 -73031937 + Lx3A LINE L1 5873 6964 -17 7 1191 627 81 0 0 chr5 79505328 79505414 -73031845 + (GA)n Simple_repeat Simple_repeat 2 87 0 8 1191 269 118 0 19 chr5 79505414 79505466 -73031793 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 9 1191 1004 216 68 25 chr5 79505555 79505792 -73031467 + Lx5 LINE L1 6799 7045 -5 1 1191 6159 11 0 0 chr5 79506133 79506832 -73030427 + L1Md_T LINE L1 4888 5586 -297 1 1191 7997 55 0 0 chr5 79506832 79507828 -73029431 + L1Md_T LINE L1 5587 6582 0 1 1191 275 237 26 26 chr5 79508135 79508213 -73029046 - Lx8 LINE L1 -519 6954 6877 1 1191 21 0 0 0 chr5 79509633 79509654 -73027605 + AT_rich Low_complexity Low_complexity 1 21 0 1 1191 324 379 108 21 chr5 79510059 79510299 -73026960 - MTD LTR MaLR -140 281 21 1 1191 274 134 187 107 chr5 79510505 79510580 -73026679 + L1_Mus1 LINE L1 6188 6268 -299 1 1191 410 120 13 0 chr5 79510894 79510969 -73026290 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 1 1191 6903 175 35 10 chr5 79511044 79512162 -73025097 - Lx2 LINE L1 -1 6996 5876 1 1191 270 0 0 0 chr5 79512162 79512192 -73025067 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1191 6903 175 35 10 chr5 79512192 79512397 -73024862 - Lx2 LINE L1 -1122 5875 5640 1 1191 6937 123 6 11 chr5 79512397 79513489 -73023770 + Lx2 LINE L1 5911 6997 0 1 1191 283 255 113 0 chr5 79513636 79513777 -73023482 + L1M3 LINE L1 5107 5263 -877 1 1191 1686 91 33 4 chr5 79513819 79514062 -73023197 + L1_Mus2 LINE L1 6314 6563 -3 2 1191 1328 280 80 76 chr5 79515674 79516315 -73020944 - Lx6 LINE L1 -26 7434 6792 2 1191 1333 198 46 3 chr5 79516989 79517273 -73019986 + Lx LINE L1 6353 6648 -6 2 1191 750 11 0 0 chr5 79517273 79517360 -73019899 + (GA)n Simple_repeat Simple_repeat 2 88 0 2 1191 5477 94 2 22 chr5 79517388 79517475 -73019784 - L1_Mur1 LINE L1 -1220 4666 4595 2 1191 5706 2 0 0 chr5 79517475 79518106 -73019153 + L1Md_A LINE L1 5952 6582 0 2 1191 5477 94 2 22 chr5 79518106 79518841 -73018418 - L1_Mur1 LINE L1 -1292 4594 3860 2 1191 504 123 2 16 chr5 79518841 79518949 -73018310 + Lx3_Mus LINE L1 5987 6079 -897 2 1191 342 330 114 18 chr5 79518960 79519074 -73018185 + B3 SINE B2 36 160 -56 2 1191 377 208 42 0 chr5 79519138 79519210 -73018049 + Lx6 LINE L1 7250 7324 -136 2 1191 482 57 14 0 chr5 79519311 79519381 -73017878 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1191 531 0 0 0 chr5 79519984 79520043 -73017216 + (CTTTG)n Simple_repeat Simple_repeat 1 59 0 3 1191 951 115 0 0 chr5 79520043 79520191 -73017068 + (TTCCC)n Simple_repeat Simple_repeat 4 151 0 3 1191 204 97 0 0 chr5 79520303 79520334 -73016925 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1191 675 140 140 43 chr5 79520734 79520898 -73016361 - B2_Mm2 SINE B2 -14 181 2 3 1191 1067 82 7 0 chr5 79521221 79521368 -73015891 - B1_Mus1 SINE Alu 0 148 1 3 1191 27 49 0 0 chr5 79522113 79522154 -73015105 + AT_rich Low_complexity Low_complexity 1 41 0 3 1191 737 364 67 35 chr5 79522606 79523144 -73014115 + LTR80A LTR ERVL 4 558 -25 3 1191 22 0 0 0 chr5 79523390 79523412 -73013847 + AT_rich Low_complexity Low_complexity 1 22 0 3 1191 312 70 0 0 chr5 79523452 79523495 -73013764 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1191 22 0 0 0 chr5 79523558 79523580 -73013679 + AT_rich Low_complexity Low_complexity 1 22 0 3 1191 264 319 0 0 chr5 79523799 79523868 -73013391 - RSINE1 SINE B4 -33 132 64 4 1191 25 65 0 0 chr5 79525913 79525959 -73011300 + AT_rich Low_complexity Low_complexity 1 46 0 4 1191 1416 103 12 51 chr5 79526306 79526561 -73010698 - Lx3_Mus LINE L1 -1 7008 6764 4 1191 282 238 0 45 chr5 79526627 79526715 -73010544 + CT-rich Low_complexity Low_complexity 3 86 0 4 1191 478 298 46 0 chr5 79526717 79526848 -73010411 - B1_Mur2 SINE Alu -6 143 7 4 1191 351 0 0 0 chr5 79528259 79528298 -73008961 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1191 40 87 0 0 chr5 79528676 79528779 -73008480 + AT_rich Low_complexity Low_complexity 1 103 0 4 1191 217 311 64 28 chr5 79529288 79529397 -73007862 - B1F SINE Alu 0 149 37 4 1191 1196 124 0 16 chr5 79529840 79530029 -73007230 + B2_Mm2 SINE B2 1 186 -9 4 1191 224 147 0 0 chr5 79530038 79530072 -73007187 + B1_Mus2 SINE Alu 1 34 -113 4 1191 276 133 0 0 chr5 79530077 79530137 -73007122 + (A)n Simple_repeat Simple_repeat 1 60 0 5 1191 3474 39 2 0 chr5 79530702 79531117 -73006142 - L1_Mm LINE L1 -135 5748 5333 5 1191 4656 59 29 0 chr5 79531117 79531708 -73005551 + L1Md_F2 LINE L1 5972 6579 -3 5 1191 2060 304 69 39 chr5 79531784 79532712 -73004547 - RCHARR1 DNA MER1_type -6 968 13 5 1191 1149 114 34 0 chr5 79532787 79532962 -73004297 + B2_Mm2 SINE B2 9 189 -6 5 1191 1417 253 148 33 chr5 79533659 79534140 -73003119 + RMER19B LTR ERVK 35 797 -105 5 1191 555 102 0 0 chr5 79534713 79534801 -73002458 + (TC)n Simple_repeat Simple_repeat 2 89 0 5 1191 22 35 0 0 chr5 79536290 79536319 -73000940 + AT_rich Low_complexity Low_complexity 1 29 0 5 1191 247 278 52 0 chr5 79536572 79536669 -73000590 + Lx7 LINE L1 5859 5960 -1736 5 1191 1601 109 212 7 chr5 79536745 79537032 -73000227 + RLTR44B LTR ERVK 1 346 -103 5 1191 320 265 0 0 chr5 79537026 79537094 -73000165 + URR1B DNA MER1_type 157 224 -1 6 1191 4554 264 76 71 chr5 79537109 79537858 -72999401 + Lx7 LINE L1 5980 6749 -947 5 1191 387 0 0 0 chr5 79537858 79537901 -72999358 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 6 1191 4554 264 76 71 chr5 79537901 79538715 -72998544 + Lx7 LINE L1 6750 7523 -173 5 1191 405 0 0 0 chr5 79538715 79538760 -72998499 + (TTTTA)n Simple_repeat Simple_repeat 4 48 0 6 1191 4554 264 76 71 chr5 79538760 79538873 -72998386 + Lx7 LINE L1 7524 7665 -31 5 1191 2299 198 26 35 chr5 79538900 79539465 -72997794 + L1VL4 LINE L1 256 815 -5487 6 1191 1683 215 34 72 chr5 79539462 79539993 -72997266 + Lx7 LINE L1 7185 7695 -1 6 1191 21 57 0 0 chr5 79539995 79540030 -72997229 + AT_rich Low_complexity Low_complexity 1 35 0 6 1191 509 47 47 0 chr5 79540030 79540115 -72997144 + MusHAL1 LINE L1 614 702 -2652 6 1191 34970 47 6 6 chr5 79540117 79545344 -72991915 + L1Md_T LINE L1 263 5589 -297 6 1191 8348 37 1 0 chr5 79545344 79546339 -72990920 + L1Md_T LINE L1 5590 6585 0 6 1191 2234 92 0 0 chr5 79546341 79546679 -72990580 + MusHAL1 LINE L1 687 1024 -2329 6 1191 13910 184 13 16 chr5 79546671 79549366 -72987893 + L1_Mus4 LINE L1 3058 5751 -132 6 1191 2870 87 13 3 chr5 79549366 79549747 -72987512 + IAPEY_LTR LTR ERVK 1 385 0 6 1191 13910 121 19 7 chr5 79549747 79550611 -72986648 + L1_Mus4 LINE L1 5752 6628 -8 6 1191 2009 18 0 0 chr5 79550622 79550848 -72986411 + L1Md_F2 LINE L1 5361 5586 -297 7 1191 8022 48 7 0 chr5 79550848 79551836 -72985423 + L1Md_F2 LINE L1 5587 6581 -1 7 1191 351 230 95 0 chr5 79552735 79552861 -72984398 + L1M3 LINE L1 4324 4461 -1679 7 1191 557 289 43 29 chr5 79552906 79553116 -72984143 + Lx9 LINE L1 6501 6713 -931 7 1191 7845 108 9 10 chr5 79553116 79554264 -72982995 - Lx3_Mus LINE L1 -119 6890 5744 7 1191 1572 275 24 4 chr5 79554266 79554777 -72982482 + MYSERV6-int LTR ERVK 633 1153 -7806 7 1191 234 128 0 0 chr5 79554993 79555032 -72982227 + (TCC)n Simple_repeat Simple_repeat 2 40 0 7 1191 33 20 0 20 chr5 79555682 79555699 -72981560 + AT_rich Low_complexity Low_complexity 1 17 0 7 1191 919 127 44 6 chr5 79555699 79555858 -72981401 + Lx3A LINE L1 6810 6974 -7 7 1191 33 20 0 20 chr5 79555858 79555891 -72981368 + AT_rich Low_complexity Low_complexity 1 33 0 7 1191 887 282 61 37 chr5 79555953 79556281 -72980978 + L1_Mur3 LINE L1 4872 5207 -673 7 1191 25 75 0 0 chr5 79556481 79556534 -72980725 + AT_rich Low_complexity Low_complexity 1 53 0 8 1191 31 26 0 0 chr5 79556610 79556648 -72980611 + AT_rich Low_complexity Low_complexity 1 38 0 8 1191 7161 41 6 2 chr5 79556720 79557597 -72979662 + L1Md_F2 LINE L1 5701 6580 -2 8 148 4040 169 112 15 chr5 79560424 79561294 -72975965 + RMER17B LTR ERVK 1 954 -4 8 1192 22 35 0 0 chr5 79561521 79561550 -72975709 + AT_rich Low_complexity Low_complexity 1 29 0 8 1192 287 313 51 51 chr5 79561841 79561999 -72975260 - ORR1D2 LTR MaLR 0 370 213 8 1192 458 96 14 0 chr5 79562012 79562085 -72975174 + (TTTTC)n Simple_repeat Simple_repeat 2 75 0 8 1192 597 63 21 0 chr5 79562110 79562205 -72975054 - L1Md_F2 LINE L1 -2 6582 6486 8 1192 9529 65 4 5 chr5 79562205 79563248 -72974011 - L1Md_F2 LINE L1 -291 6291 5249 8 1192 234 0 0 0 chr5 79563248 79563274 -72973985 + (TA)n Simple_repeat Simple_repeat 2 27 0 8 1192 9529 79 13 16 chr5 79563274 79563965 -72973294 - L1Md_F2 LINE L1 -635 5248 4561 8 1192 19963 142 110 19 chr5 79563963 79567161 -72970098 + Lx5 LINE L1 1148 4844 -2206 8 1192 287 284 20 31 chr5 79567161 79567259 -72970000 - ORR1D2 LTR MaLR -287 97 1 8 1192 19963 142 110 19 chr5 79567259 79569037 -72968222 + Lx5 LINE L1 4845 6901 -149 8 1192 271 339 9 35 chr5 79569280 79569396 -72967863 + B3A SINE B2 5 117 -81 9 1192 25 0 0 0 chr5 79571790 79571815 -72965444 + AT_rich Low_complexity Low_complexity 1 25 0 9 1192 6450 198 40 18 chr5 79572463 79574569 -72962690 + Lx5 LINE L1 4837 7004 -46 9 1192 597 70 30 0 chr5 79575270 79575370 -72961889 + (TCTA)n Simple_repeat Simple_repeat 1 103 0 9 1192 509 76 13 0 chr5 79575400 79575479 -72961780 + (TG)n Simple_repeat Simple_repeat 2 81 0 9 1192 34 89 0 0 chr5 79576428 79576518 -72960741 + AT_rich Low_complexity Low_complexity 1 90 0 9 1192 11648 95 23 82 chr5 79576588 79577320 -72959939 - MusHAL1 LINE L1 -722 2631 1885 9 1192 1348 56 28 0 chr5 79577320 79577498 -72959761 - B2_Mm1a SINE B2 -1 192 10 9 1192 11648 95 23 82 chr5 79577498 79578815 -72958444 - MusHAL1 LINE L1 -722 1884 538 9 1192 989 181 36 134 chr5 79579194 79579551 -72957708 - RLTRETN_Mm LTR ERVK 0 322 1 9 1192 1061 269 161 42 chr5 79579664 79580157 -72957102 + Lx7 LINE L1 6856 7407 -289 9 1192 351 253 55 31 chr5 79580191 79580354 -72956905 + Lx7 LINE L1 7511 7677 -19 9 1192 211 91 68 0 chr5 79580363 79580407 -72956852 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1192 547 320 101 44 chr5 79580848 79581145 -72956114 + MTE-int LTR MaLR 1145 1458 -122 1 1192 23 33 0 0 chr5 79581407 79581437 -72955822 + AT_rich Low_complexity Low_complexity 1 30 0 1 1192 6094 110 41 9 chr5 79583104 79584046 -72953213 - Lx3_Mus LINE L1 -4 7005 6032 1 1192 477 0 0 0 chr5 79584046 79584099 -72953160 + (TCCC)n Simple_repeat Simple_repeat 2 54 0 1 1192 6094 110 41 9 chr5 79584099 79584125 -72953134 - Lx3_Mus LINE L1 -978 6031 6006 1 1192 509 86 0 14 chr5 79584280 79584351 -72952908 + Lx LINE L1 6374 6443 -211 1 1192 460 180 23 15 chr5 79584352 79584482 -72952777 + Lx LINE L1 6524 6654 0 1 1192 778 220 168 10 chr5 79584630 79584832 -72952427 + Lx5 LINE L1 6814 7047 -3 1 1192 1118 296 66 69 chr5 79584925 79585605 -72951654 - L1_Mur3 LINE L1 -1540 4340 3675 1 1192 1088 197 9 5 chr5 79585605 79585829 -72951430 + URR1A DNA MER1_type 2 226 0 1 1192 1118 296 66 69 chr5 79585829 79586087 -72951172 - L1_Mur3 LINE L1 -2206 3674 3405 1 1192 464 257 171 21 chr5 79586088 79586275 -72950984 - B3 SINE B2 0 216 2 1 1192 1510 258 22 3 chr5 79586813 79587175 -72950084 - ORR1D1 LTR MaLR 0 374 6 1 1192 372 22 0 0 chr5 79587527 79587572 -72949687 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1192 302 234 0 0 chr5 79587686 79587750 -72949509 + Lx9 LINE L1 7338 7401 -243 1 1192 338 93 0 0 chr5 79587744 79587787 -72949472 + L1Md_F3 LINE L1 5543 5585 -298 1 1192 7964 44 5 0 chr5 79587788 79588766 -72948493 + L1Md_F3 LINE L1 5587 6569 -15 1 1192 296 123 0 186 chr5 79588766 79588836 -72948423 + ORR1B2 LTR MaLR 311 367 0 1 1192 348 118 0 0 chr5 79588877 79588945 -72948314 + (T)n Simple_repeat Simple_repeat 1 68 0 1 1192 1196 54 0 0 chr5 79588945 79589092 -72948167 - B1_Mus2 SINE Alu 0 147 1 1 1192 971 286 37 55 chr5 79589094 79589527 -72947732 - Lx9 LINE L1 -298 7346 6922 1 1192 337 288 73 80 chr5 79589543 79589845 -72947414 + Lx9 LINE L1 5812 6111 -1533 1 1192 548 288 8 0 chr5 79590127 79590259 -72947000 + B1F2 SINE Alu 8 140 -9 1 1192 6613 8 0 0 chr5 79590426 79591173 -72946086 + L1Md_A LINE L1 4840 5586 -297 1 1192 8632 19 2 0 chr5 79591173 79592167 -72945092 + L1Md_A LINE L1 5587 6582 0 1 1192 229 273 175 35 chr5 79592185 79592356 -72944903 + FordPrefect DNA Tip100 1308 1502 -181 1 1192 247 103 51 0 chr5 79593913 79593952 -72943307 + B1_Mus2 SINE Alu 80 120 -27 1 1192 720 219 51 99 chr5 79593952 79594225 -72943034 - Lx7 LINE L1 -26 7670 7411 1 1192 1073 286 37 131 chr5 79594302 79594706 -72942553 - MTC-int LTR MaLR -473 785 412 1 1192 1186 52 107 23 chr5 79594706 79594735 -72942524 - B2_Mm1a SINE B2 0 193 163 1 1192 189 0 0 0 chr5 79594735 79594756 -72942503 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1192 1186 52 107 23 chr5 79594756 79594903 -72942356 - B2_Mm1a SINE B2 -31 162 2 1 1192 1073 286 37 131 chr5 79594903 79594985 -72942274 - MTC-int LTR MaLR -847 411 345 1 1192 7027 69 3 0 chr5 79595202 79596106 -72941153 - L1_Mus2 LINE L1 0 6566 5660 1 1192 788 288 53 45 chr5 79596261 79596617 -72940642 - RLTR10D LTR ERVK 0 359 1 1 1192 320 312 25 0 chr5 79596843 79596923 -72940336 + B3A SINE B2 84 165 -33 1 1192 369 0 0 0 chr5 79596925 79596966 -72940293 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1192 681 56 0 0 chr5 79597004 79597094 -72940165 + (GA)n Simple_repeat Simple_repeat 1 90 0 1 1192 2938 61 0 3 chr5 79597338 79597715 -72939544 + L1Md_F2 LINE L1 6196 6571 -11 1 1192 10458 94 8 3 chr5 79599348 79601640 -72935619 + L1_Mus1 LINE L1 4264 6565 -2 1 1192 37880 30 0 0 chr5 79601782 79607976 -72929283 - L1Md_T LINE L1 0 6585 295 1 1192 5346 111 6 2 chr5 79608088 79608895 -72928364 + RLTR22_Mus LTR ERVK 1 810 -998 1 1192 1505 169 44 87 chr5 79609074 79609442 -72927817 + RLTR22_Mur LTR ERVK 1591 1848 0 1 1192 631 300 115 27 chr5 79609490 79609785 -72927474 + RMER5 LTR ERV1 95 415 -119 1 1192 1000 127 0 0 chr5 79610042 79610184 -72927075 + B1_Mus1 SINE Alu 2 143 -5 1 1192 354 45 0 0 chr5 79610184 79610228 -72927031 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1192 951 70 0 0 chr5 79610228 79610356 -72926903 + (GAAAA)n Simple_repeat Simple_repeat 5 132 0 1 1192 2588 134 40 37 chr5 79610788 79611269 -72925990 - RLTR45 LTR ERVK 0 482 1 1 1192 494 130 9 0 chr5 79612867 79612975 -72924284 + (TC)n Simple_repeat Simple_repeat 2 110 0 1 1192 222 37 0 0 chr5 79612986 79613013 -72924246 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1192 974 250 59 20 chr5 79613687 79613993 -72923266 - RMER6C LTR ERVK -2 688 371 1 1192 1687 180 0 10 chr5 79614002 79614300 -72922959 + RMER6C LTR ERVK 1 295 -425 1 1192 4308 105 6 12 chr5 79614315 79614719 -72922540 + L1_Mur1 LINE L1 3557 3962 -1924 1 1192 2318 121 138 30 chr5 79614719 79615154 -72922105 + RLTR45 LTR ERVK 1 482 0 1 1192 4308 105 6 12 chr5 79615154 79615415 -72921844 + L1_Mur1 LINE L1 3963 4218 -1668 1 1192 1699 171 14 39 chr5 79615423 79615787 -72921472 + RMER6C LTR ERVK 314 668 -22 1 1192 5415 68 25 16 chr5 79615794 79616554 -72920705 - RLTR13D1 LTR ERVK -39 767 1 1 1192 1611 190 19 64 chr5 79616585 79616961 -72920298 - RMER6C LTR ERVK -331 359 1 1 1192 332 197 0 0 chr5 79616974 79617035 -72920224 + RMER6C LTR ERVK 16 76 -614 1 1192 521 218 10 0 chr5 79618148 79618249 -72919010 - Lx6 LINE L1 -611 6849 6748 1 1192 3214 253 90 12 chr5 79618253 79619140 -72918119 + Lx6 LINE L1 5798 6753 -707 1 1192 300 27 0 0 chr5 79619230 79619267 -72917992 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1 1192 1441 239 44 115 chr5 79619529 79619615 -72917644 - RMER6A LTR ERVK 0 756 668 1 1192 405 0 0 0 chr5 79619615 79619660 -72917599 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 1 1192 1441 239 44 115 chr5 79619660 79620234 -72917025 - RMER6A LTR ERVK -89 667 145 1 1192 186 43 0 0 chr5 79620551 79620574 -72916685 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1192 518 306 89 31 chr5 79620847 79621560 -72915699 - L1M3 LINE L1 -2295 3848 3086 1 1192 456 19 0 0 chr5 79621842 79621895 -72915364 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 1 1192 1890 75 4 0 chr5 79621935 79622188 -72915071 - L1_Mus1 LINE L1 -1 6566 6313 1 1192 224 30 30 0 chr5 79622444 79622477 -72914782 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1192 336 176 0 0 chr5 79622537 79622605 -72914654 + T-rich Low_complexity Low_complexity 1 68 0 1 1192 274 295 259 28 chr5 79623067 79623210 -72914049 + B3A SINE B2 1 176 -22 1 1192 612 164 0 16 chr5 79623388 79623512 -72913747 - B2_Mm2 SINE B2 0 195 74 1 1192 233 273 0 0 chr5 79623851 79623895 -72913364 - ID4_ SINE ID -34 49 6 1 1192 180 289 81 46 chr5 79624639 79624726 -72912533 + MIRb SINE MIR 103 192 -76 1 1192 195 100 0 0 chr5 79625636 79625666 -72911593 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1192 408 307 27 41 chr5 79625806 79625952 -72911307 - MT2A LTR ERVL -160 373 230 1 1192 294 169 0 0 chr5 79625952 79626017 -72911242 + (CAA)n Simple_repeat Simple_repeat 1 65 0 1 1192 1830 207 37 5 chr5 79627742 79628150 -72909109 - MTC LTR MaLR 0 421 1 1 1192 1842 260 67 2 chr5 79628154 79628574 -72908685 - Lx5 LINE L1 -77 6973 6527 1 1192 423 307 40 99 chr5 79628574 79628827 -72908432 + MTC-int LTR MaLR 821 1058 -200 1 1192 559 310 58 5 chr5 79628852 79629040 -72908219 + MTD LTR MaLR 214 411 -8 1 1192 280 316 138 35 chr5 79629037 79629211 -72908048 - B3 SINE B2 -21 195 4 1 1192 33263 83 6 9 chr5 79629284 79634730 -72902529 - L1Md_F2 LINE L1 -2 6580 1154 1 1192 3348 210 23 17 chr5 79634720 79635261 -72901998 - L1Md_F2 LINE L1 -5519 1205 672 1 1192 6851 83 3 0 chr5 79635261 79636151 -72901108 + RLTR13B1 LTR ERVK 1 893 0 1 1192 3348 210 23 17 chr5 79636151 79636388 -72900871 - L1Md_F2 LINE L1 -6053 671 423 1 1192 222 175 56 7 chr5 79637310 79637454 -72899805 + (TA)n Simple_repeat Simple_repeat 1 151 0 1 1192 70 68 0 0 chr5 79637601 79637734 -72899525 + AT_rich Low_complexity Low_complexity 1 133 0 1 1192 2161 222 72 95 chr5 79638074 79638330 -72898929 - RMER6C LTR ERVK 0 690 446 1 1192 1048 103 6 0 chr5 79638330 79638486 -72898773 - L1_Mus2 LINE L1 0 6566 6410 1 1192 2161 222 72 95 chr5 79638486 79638934 -72898325 - RMER6C LTR ERVK -245 445 2 1 1192 1325 152 28 12 chr5 79639747 79639994 -72897265 - Lx LINE L1 -6 6648 6398 1 1192 27 0 0 0 chr5 79640195 79640222 -72897037 + AT_rich Low_complexity Low_complexity 1 27 0 1 1192 292 22 44 0 chr5 79640863 79640908 -72896351 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1192 1107 140 0 6 chr5 79640921 79641101 -72896158 - RMER6C LTR ERVK -12 678 500 1 1192 718 202 207 0 chr5 79641184 79641372 -72895887 - RMER6C LTR ERVK -460 230 4 1 1192 21 0 0 0 chr5 79641810 79641831 -72895428 + AT_rich Low_complexity Low_complexity 1 21 0 1 1192 323 343 152 24 chr5 79642045 79642335 -72894924 + L1M4 LINE L1 3418 3744 -2402 1 1192 243 250 20 59 chr5 79642546 79642648 -72894611 + MLT1B LTR MaLR 28 125 -265 1 1192 33 0 0 0 chr5 79642648 79642681 -72894578 + AT_rich Low_complexity Low_complexity 1 33 0 1 1192 244 346 42 36 chr5 79643068 79643236 -72894023 - Lx9 LINE L1 -228 7416 7248 1 1192 318 330 0 0 chr5 79643254 79643342 -72893917 - Lx9 LINE L1 -453 7191 7104 1 1192 554 292 74 120 chr5 79643389 79643542 -72893717 - RMER16 LTR ERVK -1 532 378 1 1192 1173 106 0 0 chr5 79643542 79643722 -72893537 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1192 554 292 74 120 chr5 79643722 79643823 -72893436 - RMER16 LTR ERVK -156 377 281 1 1192 8018 54 2 0 chr5 79643823 79644817 -72892442 + L1Md_F2 LINE L1 5587 6582 0 1 1192 554 268 42 106 chr5 79644817 79644980 -72892279 - RMER16 LTR ERVK -253 280 1 1 1192 363 304 22 7 chr5 79645006 79645142 -72892117 - Lx9 LINE L1 -595 7049 6912 1 1192 244 262 105 19 chr5 79645160 79645265 -72891994 - Lx9 LINE L1 -1182 6462 6349 1 1192 513 232 0 0 chr5 79645279 79645374 -72891885 - Lx3C LINE L1 -159 6817 6723 1 1192 390 57 0 0 chr5 79645567 79645620 -72891639 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1 1192 22 0 0 0 chr5 79646002 79646024 -72891235 + AT_rich Low_complexity Low_complexity 1 22 0 1 1192 690 243 125 14 chr5 79646213 79646509 -72890750 + Lx9 LINE L1 7300 7628 -16 1 1192 7870 162 32 9 chr5 79646507 79647994 -72889265 + Lx2 LINE L1 5479 6995 -2 1 1192 2602 62 24 0 chr5 79648423 79648761 -72888498 + ORR1A0 LTR MaLR 1 346 0 1 1192 13854 57 6 1 chr5 79648761 79650543 -72886716 + ORR1A0-int LTR MaLR 1 1792 0 1 1192 2440 74 27 0 chr5 79650543 79650880 -72886379 + ORR1A0 LTR MaLR 1 346 0 1 1192 337 385 52 24 chr5 79651312 79651522 -72885737 + L2 LINE L2 2692 2907 -512 1 1192 23 33 0 0 chr5 79652016 79652046 -72885213 + AT_rich Low_complexity Low_complexity 1 30 0 1 1192 583 319 29 10 chr5 79652125 79652331 -72884928 - B3 SINE B2 -5 211 2 1 1192 198 143 0 0 chr5 79652373 79652408 -72884851 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1192 28 29 0 0 chr5 79652443 79652478 -72884781 + AT_rich Low_complexity Low_complexity 1 35 0 2 1192 441 0 0 0 chr5 79652894 79652943 -72884316 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 2 1192 1833 176 53 12 chr5 79653011 79653351 -72883908 + Lx4B LINE L1 6178 6531 -527 2 1192 2786 82 15 0 chr5 79653356 79653745 -72883514 + MTB LTR MaLR 6 400 0 2 1192 1026 209 35 26 chr5 79653745 79653971 -72883288 + Lx4B LINE L1 6527 6754 -304 2 1192 1033 116 0 62 chr5 79653978 79654171 -72883088 + Lx2B LINE L1 6818 6998 -2 2 1192 183 80 0 0 chr5 79654200 79654225 -72883034 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 2 1192 273 99 27 27 chr5 79655705 79655778 -72881481 + A-rich Low_complexity Low_complexity 3 75 0 2 1192 464 324 14 0 chr5 79656182 79656327 -72880932 + B1_Mur2 SINE Alu 1 147 -2 2 1192 502 302 125 39 chr5 79656386 79656727 -72880532 + L1MB1 LINE L1 4740 5108 -1035 2 1192 2362 70 9 41 chr5 79656727 79657069 -72880190 + L1Md_F2 LINE L1 6234 6564 -18 2 1192 504 279 123 37 chr5 79657069 79657747 -72879512 + L1MB1 LINE L1 5109 5854 -335 2 1192 371 341 31 8 chr5 79657855 79657985 -72879274 + B3A SINE B2 2 134 -64 2 1192 731 260 58 10 chr5 79658367 79658573 -72878686 - B3 SINE B2 0 216 1 2 1192 183 100 0 0 chr5 79658720 79658750 -72878509 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 1192 10295 161 57 5 chr5 79659512 79662503 -72874756 + Lx2 LINE L1 3840 6997 0 2 1192 1307 307 80 41 chr5 79664223 79665198 -72872061 + Lx9 LINE L1 6613 7625 -19 2 1192 309 282 9 18 chr5 79665541 79665653 -72871606 + T-rich Low_complexity Low_complexity 5 115 0 2 1192 707 121 22 15 chr5 79667230 79667364 -72869895 - L1Md_F2 LINE L1 0 6582 6448 2 1192 378 0 0 0 chr5 79667458 79667500 -72869759 + (TC)n Simple_repeat Simple_repeat 2 43 0 2 1192 188 67 33 0 chr5 79667501 79667531 -72869728 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 1192 23 33 0 0 chr5 79667574 79667604 -72869655 + AT_rich Low_complexity Low_complexity 1 30 0 2 1192 1444 288 23 29 chr5 79667729 79668208 -72869051 - MT2A LTR ERVL -57 476 1 2 1192 1670 204 65 23 chr5 79668216 79668568 -72868691 - RMER1B Other Other -232 834 468 2 1192 339 175 0 0 chr5 79668833 79668896 -72868363 + MT2B LTR ERVL 1 63 -538 2 1192 1217 14 0 0 chr5 79668896 79669036 -72868223 - L1Md_T LINE L1 -681 5202 5063 2 1192 3263 16 0 0 chr5 79669032 79669406 -72867853 + L1Md_T LINE L1 5213 5586 -297 2 1192 8441 32 0 0 chr5 79669406 79670402 -72866857 + L1Md_T LINE L1 5587 6582 0 2 1192 275 245 156 83 chr5 79670473 79670724 -72866535 + MT2B LTR ERVL 95 456 -145 2 1192 9526 116 14 4 chr5 79670724 79673126 -72864133 + L1VL1 LINE L1 149 2575 -1123 2 1192 30040 98 47 5 chr5 79673139 79678497 -72858762 + L1Md_F2 LINE L1 387 5983 -599 2 1192 38339 7 0 0 chr5 79678492 79683819 -72853440 + L1Md_A LINE L1 260 5586 -297 2 1192 8985 4 0 0 chr5 79683819 79684815 -72852444 + L1Md_A LINE L1 5587 6582 0 2 1192 4291 90 10 7 chr5 79684821 79685425 -72851834 + L1Md_F2 LINE L1 5963 6568 -14 2 1192 18086 132 9 44 chr5 79685460 79688223 -72849036 + L1Md_F2 LINE L1 2799 5439 -444 2 1192 4810 87 6 0 chr5 79688223 79688866 -72848393 + L1_Mus1 LINE L1 5921 6567 0 2 1192 18086 150 58 61 chr5 79688866 79689970 -72847289 + L1Md_F2 LINE L1 5440 6570 -12 2 1192 748 199 49 20 chr5 79689974 79690163 -72847096 + MT2B LTR ERVL 241 558 -43 2 1192 261 0 0 0 chr5 79690714 79690743 -72846516 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1192 423 92 0 0 chr5 79690743 79690807 -72846452 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1192 2120 75 7 0 chr5 79690893 79691174 -72846085 - L1_Mus1 LINE L1 -140 6427 6145 2 1192 710 121 24 8 chr5 79691174 79691299 -72845960 + L1Md_F2 LINE L1 6443 6569 -13 2 18 751 327 70 17 chr5 79691596 79691954 -72845305 - MTE2a LTR MaLR -2 377 1 2 1193 974 324 75 3 chr5 79692028 79692403 -72844856 + MTD LTR MaLR 18 419 0 2 1193 664 265 227 30 chr5 79692426 79692726 -72844533 + MTD-int LTR MaLR 22 380 -878 2 1193 498 344 77 23 chr5 79692917 79693434 -72843825 + MTD-int LTR MaLR 392 1058 -200 2 1193 295 322 98 26 chr5 79693569 79693841 -72843418 + MTD LTR MaLR 60 387 -32 2 1193 322 319 45 85 chr5 79693848 79693971 -72843288 + MTD LTR MaLR 208 329 -92 2 1193 3376 73 13 4 chr5 79693971 79694422 -72842837 + L1Md_F2 LINE L1 6122 6576 -6 2 1193 322 319 45 85 chr5 79694422 79694521 -72842738 + MTD LTR MaLR 330 421 0 2 1193 1542 365 102 31 chr5 79694523 79695436 -72841823 - MTE-int LTR MaLR -53 1527 550 2 1193 734 342 42 11 chr5 79695454 79695741 -72841518 - MTE-int LTR MaLR -1186 394 99 2 1193 658 288 38 5 chr5 79696673 79696886 -72840373 + RLTR45 LTR ERVK 263 482 0 2 1193 243 381 23 0 chr5 79697064 79697237 -72840022 + B3A SINE B2 3 179 -19 2 1193 437 330 16 62 chr5 79697280 79697456 -72839803 - MTE2b LTR MaLR -32 347 180 2 1193 998 105 0 23 chr5 79697456 79697632 -72839627 + (TTCCC)n Simple_repeat Simple_repeat 1 172 0 2 1193 437 330 16 62 chr5 79697632 79697649 -72839610 - MTE2b LTR MaLR -200 179 163 2 1193 589 324 84 26 chr5 79698487 79698902 -72838357 - Lx8 LINE L1 -129 7344 6906 2 1193 325 239 0 0 chr5 79698951 79699022 -72838237 + Lx9 LINE L1 7247 7317 -327 2 1193 2230 107 3 6 chr5 79699236 79699556 -72837703 - ORR1A2 LTR MaLR -8 319 1 2 1193 575 316 27 59 chr5 79699582 79699804 -72837455 + B3 SINE B2 2 216 0 2 1193 31 0 0 0 chr5 79699915 79699946 -72837313 + AT_rich Low_complexity Low_complexity 1 31 0 2 1193 1719 246 12 26 chr5 79700006 79700431 -72836828 + MTC LTR MaLR 1 419 -2 2 1193 1290 124 69 16 chr5 79700443 79700689 -72836570 - RLTR13B1 LTR ERVK 0 806 548 2 1193 1412 146 20 16 chr5 79700684 79700935 -72836324 - RLTR13B1 LTR ERVK -641 252 1 2 1193 510 322 29 9 chr5 79701294 79701504 -72835755 - B3 SINE B2 0 216 3 2 1193 267 270 69 20 chr5 79702415 79702517 -72834742 - L1_Rod LINE L1 -1039 4808 4702 2 1193 1085 297 25 46 chr5 79703160 79703798 -72833461 + Lx7 LINE L1 5348 5976 -1668 2 1193 26 0 0 0 chr5 79704028 79704054 -72833205 + AT_rich Low_complexity Low_complexity 1 26 0 2 1193 210 71 0 0 chr5 79704143 79704171 -72833088 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1193 28 0 0 0 chr5 79704256 79704284 -72832975 + AT_rich Low_complexity Low_complexity 1 28 0 2 1193 1604 199 22 57 chr5 79704427 79704795 -72832464 - ORR1B1 LTR MaLR 0 394 40 2 1193 28 0 0 0 chr5 79704856 79704884 -72832375 + AT_rich Low_complexity Low_complexity 1 28 0 2 1193 302 271 141 14 chr5 79705002 79705144 -72832115 + MLT2D LTR ERVL 70 229 -185 2 1193 543 306 84 13 chr5 79705160 79705397 -72831862 + RMER1C Other Other 259 692 -650 2 1193 306 139 27 14 chr5 79705411 79705484 -72831775 + (TA)n Simple_repeat Simple_repeat 1 74 0 2 1193 351 0 0 0 chr5 79705490 79705529 -72831730 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1193 445 367 32 0 chr5 79705534 79705692 -72831567 + B3A SINE B2 34 196 -2 2 1193 621 117 246 16 chr5 79705722 79705844 -72831415 + B1_Mur4 SINE Alu 1 150 0 2 1193 180 59 54 81 chr5 79705847 79705921 -72831338 + A-rich Low_complexity Low_complexity 2 73 0 2 1193 476 277 45 6 chr5 79707099 79707255 -72830004 - Lx8 LINE L1 -531 6942 6781 2 1193 440 336 144 15 chr5 79707282 79707545 -72829714 + Lx7 LINE L1 6958 7254 -219 2 1193 1991 121 3 0 chr5 79707539 79707829 -72829430 - L1_Mm LINE L1 -303 5580 5290 2 1193 7067 91 5 10 chr5 79707833 79708896 -72828363 - L1Md_F2 LINE L1 0 6582 5526 2 1193 219 69 0 0 chr5 79708910 79708939 -72828320 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2 1193 1013 101 0 63 chr5 79708942 79709100 -72828159 - B1_Mus1 SINE Alu 0 148 1 2 1193 2304 93 3 0 chr5 79709100 79709413 -72827846 + L1_Mus1 LINE L1 6248 6561 -6 2 1193 854 130 0 0 chr5 79709415 79709553 -72827706 - L1Md_F2 LINE L1 -590 5293 5156 2 1193 3874 130 10 2 chr5 79709555 79710190 -72827069 + L1_Mus3 LINE L1 6027 6638 0 2 1193 1308 330 42 35 chr5 79710618 79711265 -72825994 + Lx9 LINE L1 6358 7008 -636 2 1193 230 262 96 36 chr5 79711514 79711680 -72825579 + L1M4 LINE L1 4751 4926 -1220 2 1193 312 284 96 66 chr5 79711890 79712026 -72825233 + HAL1-3A_ME LINE L1 1976 2115 -743 2 1193 27 29 0 0 chr5 79712151 79712185 -72825074 + AT_rich Low_complexity Low_complexity 1 34 0 2 1193 3733 170 12 6 chr5 79712321 79712961 -72824298 + RLTR21 LTR ERVK 3 646 -926 2 1193 247 237 16 33 chr5 79712966 79713149 -72824110 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1193 1706 249 24 54 chr5 79713149 79713192 -72824067 + RLTR21 LTR ERVK 1084 1125 -447 2 1193 387 0 0 0 chr5 79713192 79713235 -72824024 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1193 1706 249 24 54 chr5 79713235 79713695 -72823564 + RLTR21 LTR ERVK 1126 1571 -1 2 1193 203 114 57 0 chr5 79713733 79713768 -72823491 + GA-rich Low_complexity Low_complexity 4 40 0 2 1193 246 128 0 0 chr5 79713774 79713813 -72823446 + (GGGA)n Simple_repeat Simple_repeat 3 41 0 2 1193 237 226 16 0 chr5 79713823 79713871 -72823388 + GA-rich Low_complexity Low_complexity 3 51 0 2 1193 1016 139 0 11 chr5 79713871 79714053 -72823206 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1193 237 226 16 0 chr5 79714053 79714066 -72823193 + polypurine Low_complexity Low_complexity 52 64 0 2 1193 2606 17 0 3 chr5 79714152 79714455 -72822804 + L1Md_A LINE L1 5285 5586 -297 2 1193 8447 29 1 0 chr5 79714455 79715448 -72821811 + L1Md_A LINE L1 5587 6580 -2 2 1193 23 0 0 0 chr5 79716806 79716829 -72820430 + AT_rich Low_complexity Low_complexity 1 23 0 2 1193 218 105 0 26 chr5 79717632 79717671 -72819588 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2 1193 33 66 0 0 chr5 79718203 79718264 -72818995 + AT_rich Low_complexity Low_complexity 1 61 0 2 1193 578 14 14 0 chr5 79718429 79718500 -72818759 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 2 1193 288 0 0 0 chr5 79718555 79718587 -72818672 + (TTA)n Simple_repeat Simple_repeat 1 32 0 2 1193 3462 96 18 0 chr5 79718872 79719361 -72817898 + L1_Mus1 LINE L1 6069 6566 -1 2 1193 5521 166 45 21 chr5 79719484 79720514 -72816745 - Lx2 LINE L1 -33 6964 5911 2 1193 1353 205 14 32 chr5 79720558 79720906 -72816353 + L1_Mur2 LINE L1 1500 1841 -4036 2 1193 646 232 45 26 chr5 79720906 79721061 -72816198 + MTE2a LTR MaLR 199 356 -23 2 1193 1179 117 0 0 chr5 79721214 79721394 -72815865 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1193 429 168 9 18 chr5 79721395 79721504 -72815755 + CT-rich Low_complexity Low_complexity 3 110 0 2 1193 2181 128 57 17 chr5 79721599 79721948 -72815311 - Lx2B LINE L1 -123 6877 6515 2 1193 408 121 0 0 chr5 79721950 79722008 -72815251 + 4.5SRNA scRNA scRNA 21 78 -16 2 1193 352 79 0 0 chr5 79722016 79722079 -72815180 - L1_Mus3 LINE L1 0 6638 6576 2 1193 5186 124 38 1 chr5 79722311 79723151 -72814108 + Lx3A LINE L1 6097 6967 -14 2 1193 390 57 0 0 chr5 79723151 79723204 -72814055 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 3 1193 609 374 42 21 chr5 79723209 79723684 -72813575 + Lx8 LINE L1 6329 6813 -660 3 1193 295 153 19 57 chr5 79723752 79723911 -72813348 + (CAAA)n Simple_repeat Simple_repeat 4 156 0 3 1193 189 213 0 0 chr5 79724004 79724051 -72813208 + CT-rich Low_complexity Low_complexity 3 49 0 3 1193 51 65 0 0 chr5 79726284 79726377 -72810882 + AT_rich Low_complexity Low_complexity 1 93 0 3 1193 7732 18 19 0 chr5 79726695 79727593 -72809666 - L1Md_A LINE L1 -1 6581 5667 3 1193 22 35 0 0 chr5 79727612 79727641 -72809618 + AT_rich Low_complexity Low_complexity 1 29 0 3 1193 616 285 15 15 chr5 79728154 79728350 -72808909 + Lx6 LINE L1 7265 7460 0 3 1193 486 0 0 0 chr5 79730752 79730806 -72806453 + (TC)n Simple_repeat Simple_repeat 2 55 0 3 1193 483 266 14 14 chr5 79730876 79731017 -72806242 + MLT2B1 LTR ERVL 3 143 -377 3 1193 4189 179 32 12 chr5 79731049 79731860 -72805399 + Lx2B LINE L1 6166 6992 -8 3 1193 445 349 92 0 chr5 79732048 79732200 -72805059 + B3A SINE B2 3 168 -30 3 1193 535 14 28 0 chr5 79732204 79732276 -72804983 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1193 202 182 0 0 chr5 79733758 79733791 -72803468 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1193 456 301 86 20 chr5 79734404 79734601 -72802658 - B3 SINE B2 -6 210 1 3 1193 763 315 20 65 chr5 79735077 79735474 -72801785 - MTE2b LTR MaLR 0 379 1 3 1193 251 54 27 0 chr5 79735683 79735720 -72801539 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1193 393 86 0 0 chr5 79735720 79735778 -72801481 + (TA)n Simple_repeat Simple_repeat 1 58 0 3 1193 416 161 12 0 chr5 79735852 79735933 -72801326 + CT-rich Low_complexity Low_complexity 1 82 0 3 1193 259 216 27 0 chr5 79736356 79736430 -72800829 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 1193 2301 91 0 12 chr5 79736516 79736840 -72800419 + L1_Mus1 LINE L1 6248 6567 0 3 1193 701 90 16 8 chr5 79737033 79737156 -72800103 + L1Md_F2 LINE L1 6458 6581 -1 3 1193 30 27 0 0 chr5 79737289 79737326 -72799933 + AT_rich Low_complexity Low_complexity 1 37 0 3 1193 4340 157 39 62 chr5 79738278 79738579 -72798680 + RMER12 LTR ERVK 1 317 -1005 3 1193 4792 52 0 21 chr5 79738579 79739204 -72798055 - L1Md_F2 LINE L1 -2 6580 5969 3 1193 4340 157 39 62 chr5 79739204 79739812 -72797447 + RMER12 LTR ERVK 318 888 -434 3 1193 403 107 13 13 chr5 79739813 79739889 -72797370 + (TG)n Simple_repeat Simple_repeat 2 77 0 3 1193 330 289 119 109 chr5 79739912 79740122 -72797137 + RMER12 LTR ERVK 1001 1212 -110 3 1193 363 399 12 0 chr5 79741974 79742142 -72795117 + B3A SINE B2 5 174 -24 3 1193 320 256 152 23 chr5 79742482 79742614 -72794645 + Lx9 LINE L1 6862 7010 -634 3 1193 1104 231 165 29 chr5 79742650 79743068 -72794191 + Lx9 LINE L1 6943 7417 -227 3 1193 354 61 0 0 chr5 79743068 79743117 -72794142 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1193 394 250 96 102 chr5 79743127 79743430 -72793829 + MTC-int LTR MaLR 951 1251 -7 3 1193 38049 12 1 7 chr5 79743462 79748828 -72788431 + L1Md_A LINE L1 261 5586 -297 3 1193 8826 11 1 0 chr5 79748828 79749822 -72787437 + L1Md_A LINE L1 5587 6581 -1 3 1193 24 0 0 0 chr5 79749822 79749846 -72787413 + AT_rich Low_complexity Low_complexity 1 24 0 3 1193 800 355 53 9 chr5 79749871 79750209 -72787050 + MTD LTR MaLR 55 407 -12 3 1193 216 135 0 0 chr5 79750772 79750809 -72786450 + (TCC)n Simple_repeat Simple_repeat 3 39 0 3 1193 4530 186 51 48 chr5 79750979 79751698 -72785561 - L1VL4 LINE L1 -3504 2382 1667 3 1193 1149 68 0 0 chr5 79751698 79751844 -72785415 - B1_Mus1 SINE Alu -1 147 2 3 1193 4530 191 35 36 chr5 79751844 79752516 -72784743 - L1VL4 LINE L1 -4220 1666 991 3 1193 307 344 59 35 chr5 79753036 79753205 -72784054 - B2_Mm2 SINE B2 -19 176 4 3 1193 3359 66 0 0 chr5 79753384 79753811 -72783448 - L1_Mus1 LINE L1 -568 6014 5588 3 1193 3906 97 0 14 chr5 79753823 79754380 -72782879 + L1_Mus1 LINE L1 6019 6567 0 3 1193 916 284 146 41 chr5 79754505 79754993 -72782266 - RMER2 LTR ERV1 -27 540 2 3 1193 3876 271 44 33 chr5 79755146 79756266 -72780993 + Lx7 LINE L1 6372 7503 -193 3 1193 180 97 0 0 chr5 79756280 79756311 -72780948 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1193 711 24 0 0 chr5 79756319 79756404 -72780855 + (GAAA)n Simple_repeat Simple_repeat 1 85 0 3 1193 195 114 0 0 chr5 79756483 79756518 -72780741 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1193 27 0 0 0 chr5 79757508 79757535 -72779724 + AT_rich Low_complexity Low_complexity 1 27 0 3 1193 515 125 0 0 chr5 79757911 79757991 -72779268 + B2_Mm2 SINE B2 2 81 -114 3 1193 24 0 0 0 chr5 79758496 79758520 -72778739 + AT_rich Low_complexity Low_complexity 1 24 0 3 1193 216 0 0 0 chr5 79758622 79758646 -72778613 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1193 342 0 0 0 chr5 79758646 79758683 -72778576 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1193 549 0 0 0 chr5 79758685 79758746 -72778513 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1193 7199 78 32 3 chr5 79758755 79759819 -72777440 + L1_Mus1 LINE L1 5487 6654 0 3 1193 549 152 0 0 chr5 79759830 79759935 -72777324 + (TA)n Simple_repeat Simple_repeat 2 106 0 3 1193 261 0 0 0 chr5 79759935 79759964 -72777295 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1193 612 97 0 0 chr5 79759987 79760080 -72777179 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 1193 1480 294 34 17 chr5 79760872 79761340 -72775919 - Lx6 LINE L1 0 7460 6985 3 1193 305 287 40 17 chr5 79761379 79761556 -72775703 + L1MA5 LINE L1 5758 5938 -362 3 1193 21 0 0 0 chr5 79761841 79761862 -72775397 + AT_rich Low_complexity Low_complexity 1 21 0 3 1193 1060 312 57 12 chr5 79762018 79762436 -72774823 + Lx7 LINE L1 6758 7194 -502 3 1193 1188 246 50 75 chr5 79762487 79762926 -72774333 + RMER6C LTR ERVK 114 541 -149 3 1193 272 176 15 0 chr5 79763799 79763867 -72773392 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1193 4165 36 2 0 chr5 79763904 79764402 -72772857 - L1Md_T LINE L1 0 6582 6084 3 1193 36 23 0 0 chr5 79764611 79764654 -72772605 + AT_rich Low_complexity Low_complexity 1 43 0 3 1193 267 288 0 0 chr5 79765197 79765271 -72771988 + ID4_ SINE ID 10 83 0 3 1193 186 380 47 70 chr5 79766874 79767025 -72770234 + L2 LINE L2 2868 3021 -398 3 1193 1990 88 3 3 chr5 79767025 79767309 -72769950 + L1_Mus2 LINE L1 6281 6564 -2 3 1193 186 380 47 70 chr5 79767309 79767372 -72769887 + L2 LINE L2 3022 3077 -342 3 1193 6022 132 65 9 chr5 79768721 79768831 -72768428 - Lx LINE L1 -2 6652 6520 3 1193 246 32 0 0 chr5 79768831 79768862 -72768397 + (CCCA)n Simple_repeat Simple_repeat 3 33 0 3 1193 6022 150 40 5 chr5 79768862 79770348 -72766911 - Lx LINE L1 -135 6519 4997 3 1193 504 141 11 0 chr5 79770685 79770777 -72766482 - L1_Mm LINE L1 -551 5332 5240 3 1193 576 107 0 0 chr5 79770768 79770852 -72766407 + L1Md_F2 LINE L1 5997 6080 -502 3 1193 2538 128 2 5 chr5 79770851 79771244 -72766015 - L1_Mm LINE L1 -631 5252 4861 3 1193 2278 74 6 3 chr5 79771244 79771557 -72765702 + L1_Mus1 LINE L1 6253 6566 -1 3 1193 241 391 58 36 chr5 79771582 79771720 -72765539 + ID_B1 SINE B4 84 224 0 3 1193 204 158 0 0 chr5 79771804 79771842 -72765417 + CT-rich Low_complexity Low_complexity 1 38 0 3 1193 10943 79 1 99 chr5 79772034 79773354 -72763905 + L1_Mus2 LINE L1 4275 5586 -297 3 1193 7976 50 2 4 chr5 79773354 79774352 -72762907 + L1Md_F2 LINE L1 5587 6582 0 3 1193 10943 82 1 88 chr5 79774352 79774956 -72762303 + L1_Mus2 LINE L1 5587 6026 -540 3 1193 2983 63 13 5 chr5 79774956 79775353 -72761906 - MTB LTR MaLR 0 400 1 3 1193 6804 92 4 51 chr5 79775353 79775918 -72761341 + L1_Mus2 LINE L1 6027 6566 0 3 1193 414 0 0 0 chr5 79776824 79776870 -72760389 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1193 243 133 0 0 chr5 79776998 79777043 -72760216 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1193 475 43 14 14 chr5 79778460 79778531 -72758728 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1193 414 0 0 0 chr5 79778531 79778576 -72758683 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1193 476 100 12 0 chr5 79778676 79778756 -72758503 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 1193 22 35 0 0 chr5 79779630 79779659 -72757600 + AT_rich Low_complexity Low_complexity 1 29 0 3 1193 295 304 171 57 chr5 79780043 79780518 -72756741 + L1MEc LINE L1 1429 1957 -4443 3 1193 186 118 0 0 chr5 79780968 79781002 -72756257 + (TC)n Simple_repeat Simple_repeat 1 34 0 3 1193 26 30 0 0 chr5 79781354 79781387 -72755872 + AT_rich Low_complexity Low_complexity 1 33 0 3 1193 24 32 0 0 chr5 79782348 79782379 -72754880 + AT_rich Low_complexity Low_complexity 1 31 0 3 1193 210 37 0 0 chr5 79782494 79782521 -72754738 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1193 6725 86 21 2 chr5 79783284 79784255 -72753004 - L1_Mur1 LINE L1 -331 5555 4567 3 1193 3206 144 6 11 chr5 79784255 79784786 -72752473 + Lx3A LINE L1 6437 6966 -15 3 1193 411 21 0 0 chr5 79784786 79784834 -72752425 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 3 1193 2089 152 84 0 chr5 79785260 79785629 -72751630 + MTB LTR MaLR 1 400 0 3 1193 21 0 0 0 chr5 79786575 79786596 -72750663 + AT_rich Low_complexity Low_complexity 1 21 0 3 1193 854 349 67 66 chr5 79787239 79787951 -72749308 + RMER15-int LTR ERVL 61 773 -4226 3 1193 31 0 0 0 chr5 79788226 79788257 -72749002 + AT_rich Low_complexity Low_complexity 1 31 0 3 1193 250 349 0 0 chr5 79788257 79788343 -72748916 + Lx8 LINE L1 6188 6273 -1200 3 1193 980 97 7 7 chr5 79788479 79788790 -72748469 + (TAGA)n Simple_repeat Simple_repeat 1 311 0 3 1193 558 0 0 0 chr5 79788897 79788959 -72748300 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1193 420 283 80 0 chr5 79790463 79790601 -72746658 + Lx5 LINE L1 6161 6309 -741 3 1193 21 57 0 0 chr5 79790696 79790731 -72746528 + AT_rich Low_complexity Low_complexity 1 35 0 3 1193 255 125 0 0 chr5 79790809 79790849 -72746410 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1193 277 269 21 11 chr5 79790948 79791042 -72746217 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 3 1193 23 0 0 0 chr5 79791248 79791271 -72745988 + AT_rich Low_complexity Low_complexity 1 23 0 4 1193 677 250 29 18 chr5 79791773 79791944 -72745315 + MTD LTR MaLR 14 186 -233 4 1193 499 367 48 30 chr5 79791954 79792347 -72744912 - Lx8 LINE L1 -493 6980 6581 4 1193 25 31 0 0 chr5 79792416 79792448 -72744811 + AT_rich Low_complexity Low_complexity 1 32 0 4 1193 1080 220 46 92 chr5 79792712 79793037 -72744222 - Lx3C LINE L1 -2 6974 6665 4 1193 454 132 13 0 chr5 79793034 79793110 -72744149 + Lx2B LINE L1 6335 6411 -589 4 1193 1263 194 24 0 chr5 79793261 79793508 -72743751 + Lx2B LINE L1 6412 6664 -336 4 1193 25 0 0 0 chr5 79794117 79794142 -72743117 + AT_rich Low_complexity Low_complexity 1 25 0 4 1193 384 71 0 0 chr5 79794234 79794290 -72742969 + (CATAT)n Simple_repeat Simple_repeat 3 58 0 4 1193 466 325 26 55 chr5 79795507 79795816 -72741443 + L1_Mur3 LINE L1 89 388 -7340 4 1193 514 209 157 21 chr5 79795818 79796009 -72741250 + L1_Mur3 LINE L1 2227 2443 -3437 4 1193 972 123 7 0 chr5 79796009 79796155 -72741104 + B1_Mm SINE Alu 1 147 0 4 1193 233 131 19 83 chr5 79796155 79796263 -72740996 + A-rich Low_complexity Low_complexity 3 103 0 4 1193 625 237 159 4 chr5 79796318 79796551 -72740708 - RMER1B Other Other -1 1065 797 4 1193 4998 203 33 22 chr5 79796535 79797791 -72739468 + L1_Mur3 LINE L1 3488 4757 -1123 4 1193 804 290 56 8 chr5 79797800 79798050 -72739209 - L1_Mur3 LINE L1 -7199 513 252 4 1193 787 287 76 37 chr5 79798406 79798760 -72738499 - ORR1D2 LTR MaLR -2 368 1 4 1193 25 31 0 0 chr5 79799492 79799524 -72737735 + AT_rich Low_complexity Low_complexity 1 32 0 4 1193 21 0 0 0 chr5 79799595 79799616 -72737643 + AT_rich Low_complexity Low_complexity 1 21 0 4 1193 26 30 0 0 chr5 79800414 79800447 -72736812 + AT_rich Low_complexity Low_complexity 1 33 0 4 1193 204 266 31 21 chr5 79800521 79800617 -72736642 + (TATG)n Simple_repeat Simple_repeat 2 98 0 4 1193 25 0 0 0 chr5 79801606 79801631 -72735628 + AT_rich Low_complexity Low_complexity 1 25 0 4 1193 216 130 0 0 chr5 79802635 79802681 -72734578 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 1193 524 15 15 0 chr5 79803508 79803573 -72733686 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1193 6474 63 4 0 chr5 79803657 79804470 -72732789 + L1_Mus1 LINE L1 5714 6529 -38 4 1193 1597 27 0 0 chr5 79804472 79804655 -72732604 + L1Md_F2 LINE L1 5403 5585 -298 4 1193 7750 58 3 6 chr5 79804656 79805643 -72731616 + L1Md_F2 LINE L1 5587 6570 -12 4 1193 27 29 0 0 chr5 79805658 79805692 -72731567 + AT_rich Low_complexity Low_complexity 1 34 0 4 1193 216 0 0 0 chr5 79806783 79806807 -72730452 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1193 535 113 0 0 chr5 79806967 79807038 -72730221 + B1_Mus1 SINE Alu 1 71 -77 4 1193 1994 186 14 9 chr5 79807038 79807462 -72729797 + L1_Mur2 LINE L1 4583 5008 -869 4 1193 2515 68 3 12 chr5 79807547 79807887 -72729372 - L1_Mus3 LINE L1 -424 6214 5878 4 1193 2383 92 15 52 chr5 79807887 79808288 -72728971 + L1_Mus3 LINE L1 6253 6638 0 4 1193 2971 127 20 36 chr5 79808310 79808815 -72728444 + Lx3_Mus LINE L1 6511 7007 -2 4 1193 458 83 14 0 chr5 79808843 79808915 -72728344 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 4 1193 1146 112 0 0 chr5 79808932 79809110 -72728149 + (TTC)n Simple_repeat Simple_repeat 3 180 0 4 1193 2873 201 30 16 chr5 79809130 79809770 -72727489 + Lx4B LINE L1 6391 7039 -19 4 1193 183 80 0 0 chr5 79809770 79809795 -72727464 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 4 1193 194 91 30 0 chr5 79809796 79809829 -72727430 + (TTAA)n Simple_repeat Simple_repeat 4 37 0 4 1193 245 254 148 38 chr5 79809843 79810052 -72727207 + L1MC1 LINE L1 5168 5399 -747 4 1193 273 118 0 0 chr5 79810181 79810232 -72727027 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 4 1193 388 389 58 47 chr5 79810293 79810994 -72726265 + L1MC1 LINE L1 5606 6314 -19 4 1193 7558 120 22 60 chr5 79811456 79813244 -72724015 + Lx3A LINE L1 5280 6976 -5 4 1193 212 320 26 13 chr5 79813657 79813733 -72723526 + L3 LINE CR1 4088 4164 -325 4 1193 3648 140 23 21 chr5 79814182 79814789 -72722470 + Lx2B LINE L1 6390 6997 -3 4 1193 500 338 108 38 chr5 79815573 79815785 -72721474 - B4 SINE B4 0 292 66 4 1193 255 186 16 48 chr5 79816075 79816137 -72721122 + ORR1B2 LTR MaLR 1 60 -324 4 1193 735 191 13 19 chr5 79816132 79816287 -72720972 + ORR1B2 LTR MaLR 214 367 0 4 1193 1919 124 55 98 chr5 79817192 79817266 -72719993 - Lx3A LINE L1 -164 6817 6766 4 1193 513 32 0 0 chr5 79817274 79817337 -72719922 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1193 983 116 0 7 chr5 79817337 79817476 -72719783 - B1_Mus1 SINE Alu -8 140 2 4 1193 1919 124 55 98 chr5 79817476 79817767 -72719492 - Lx3A LINE L1 -216 6765 6468 4 1193 6606 81 7 34 chr5 79817818 79818771 -72718488 + L1Md_F2 LINE L1 5655 6582 0 4 1193 343 320 10 0 chr5 79818787 79818887 -72718372 + GA-rich Low_complexity Low_complexity 2 102 0 4 1193 876 59 0 0 chr5 79818894 79819013 -72718246 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 4 1193 329 256 0 0 chr5 79819014 79819092 -72718167 - Lx7 LINE L1 -342 7354 7277 4 1193 405 54 0 0 chr5 79819120 79819176 -72718083 + (TTTTA)n Simple_repeat Simple_repeat 4 59 0 4 1193 1191 150 0 23 chr5 79819455 79819673 -72717586 - Lx LINE L1 -3 6651 6439 4 1193 1481 225 149 43 chr5 79819679 79819953 -72717306 - L1_Mur3 LINE L1 -2044 3836 3493 4 1193 210 91 0 0 chr5 79819953 79819986 -72717273 + (TTG)n Simple_repeat Simple_repeat 2 34 0 4 1193 1481 225 149 43 chr5 79819986 79820288 -72716971 - L1_Mur3 LINE L1 -2388 3492 3199 4 1193 375 249 23 185 chr5 79820288 79820672 -72716587 + Lx7 LINE L1 7370 7691 -5 4 1193 643 218 37 63 chr5 79820673 79820864 -72716395 - B2_Mm2 SINE B2 -8 187 2 4 1193 21 0 0 0 chr5 79820864 79820885 -72716374 + AT_rich Low_complexity Low_complexity 1 21 0 4 1193 360 169 0 0 chr5 79821860 79821937 -72715322 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1193 21 57 0 0 chr5 79822265 79822300 -72714959 + AT_rich Low_complexity Low_complexity 1 35 0 4 1193 27 73 0 0 chr5 79822713 79822768 -72714491 + AT_rich Low_complexity Low_complexity 1 55 0 4 1194 613 316 18 59 chr5 79823480 79823699 -72713560 - B3 SINE B2 -6 210 1 4 1194 1828 43 4 4 chr5 79824510 79824744 -72712515 - L1Md_F3 LINE L1 0 6584 6351 4 1194 195 129 0 0 chr5 79824889 79824920 -72712339 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 1194 295 225 10 101 chr5 79825238 79825337 -72711922 + B3 SINE B2 127 216 0 4 1194 285 98 0 0 chr5 79825396 79825437 -72711822 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 4 1194 4485 105 7 3 chr5 79825456 79826214 -72711045 - MT-int LTR MaLR -488 770 1 4 1194 3436 64 49 0 chr5 79826214 79826386 -72710873 - MT2C_Mm LTR ERVL 0 475 304 4 1194 785 20 10 0 chr5 79826386 79826485 -72710774 + (GA)n Simple_repeat Simple_repeat 1 100 0 4 1194 3436 64 49 0 chr5 79826485 79826765 -72710494 - MT2C_Mm LTR ERVL -172 303 2 4 1194 4354 158 12 6 chr5 79827043 79827764 -72709495 + RLTR21 LTR ERVK 1 726 -846 4 1194 6518 53 0 0 chr5 79827768 79828567 -72708692 - L1Md_F2 LINE L1 -20 6562 5764 4 1194 2278 159 120 37 chr5 79828567 79829110 -72708149 + RLTR21 LTR ERVK 718 1305 -267 4 1194 434 18 18 0 chr5 79829110 79829165 -72708094 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1194 2069 212 23 120 chr5 79829165 79829604 -72707655 + RLTR21 LTR ERVK 1132 1568 -4 4 1194 903 27 0 0 chr5 79829631 79829741 -72707518 + (CA)n Simple_repeat Simple_repeat 1 110 0 4 1194 961 223 33 1 chr5 79829768 79830060 -72707199 + Lx3C LINE L1 2946 3243 -2637 4 1194 682 131 0 0 chr5 79830081 79830180 -72707079 + L1VL1 LINE L1 1 99 -6323 4 1194 2076 102 12 19 chr5 79830176 79830496 -72706763 + L1VL1 LINE L1 423 740 -5682 4 1194 11114 146 29 2 chr5 79830467 79833189 -72704070 + Lx3C LINE L1 4139 6931 -45 4 1194 6691 86 12 4 chr5 79833189 79834121 -72703138 + L1Md_F2 LINE L1 5630 6568 -14 4 1194 936 84 0 0 chr5 79834154 79834285 -72702974 + (CA)n Simple_repeat Simple_repeat 2 132 0 4 1194 8110 197 24 44 chr5 79834289 79836214 -72701045 + L1_Mur2 LINE L1 3342 5229 -648 4 1194 1476 309 48 19 chr5 79836289 79836992 -72700267 - Lx7 LINE L1 -399 7297 6574 4 1194 183 42 0 0 chr5 79837161 79837185 -72700074 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 1194 22 0 0 0 chr5 79839033 79839055 -72698204 + AT_rich Low_complexity Low_complexity 1 22 0 4 1194 30523 94 6 1 chr5 79839217 79844423 -72692836 + L1Md_F2 LINE L1 354 5585 -298 4 1194 7004 94 1 2 chr5 79844424 79845411 -72691848 + L1Md_F2 LINE L1 5587 6572 -10 4 1194 357 338 72 25 chr5 79846439 79846715 -72690544 - FordPrefect DNA Tip100 -368 1315 1027 4 1194 21 0 0 0 chr5 79847271 79847292 -72689967 + AT_rich Low_complexity Low_complexity 1 21 0 4 1194 26 0 0 0 chr5 79847370 79847396 -72689863 + AT_rich Low_complexity Low_complexity 1 26 0 4 1194 21 0 0 0 chr5 79848793 79848814 -72688445 + AT_rich Low_complexity Low_complexity 1 21 0 4 1194 274 74 0 36 chr5 79850017 79850073 -72687186 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1194 238 393 62 28 chr5 79850236 79850414 -72686845 + MLT1E1A LTR MaLR 374 557 -123 4 1194 858 116 0 0 chr5 79850509 79850656 -72686603 + (TG)n Simple_repeat Simple_repeat 2 148 0 4 1194 378 0 0 0 chr5 79851859 79851901 -72685358 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1194 565 59 0 0 chr5 79853153 79853221 -72684038 + L1Md_F2 LINE L1 5519 5586 -297 4 1194 8116 43 2 2 chr5 79853222 79854217 -72683042 + L1Md_F2 LINE L1 5588 6582 0 4 1194 1124 66 13 0 chr5 79854335 79854487 -72682772 + L1_Mus2 LINE L1 6412 6565 -1 4 1194 23 68 0 0 chr5 79854975 79855019 -72682240 + AT_rich Low_complexity Low_complexity 1 44 0 4 1194 21 36 0 0 chr5 79855888 79855916 -72681343 + AT_rich Low_complexity Low_complexity 1 28 0 4 1194 301 208 73 47 chr5 79856891 79857006 -72680253 + L1VL1 LINE L1 226 362 -6060 4 1194 624 193 87 11 chr5 79857099 79857282 -72679977 + Lx6 LINE L1 7251 7447 -13 4 1194 793 81 16 0 chr5 79860040 79860163 -72677096 + (GAA)n Simple_repeat Simple_repeat 3 127 0 4 1194 2441 99 8 8 chr5 79862142 79862508 -72674751 + L1Md_F2 LINE L1 6216 6581 -1 4 1194 423 379 39 10 chr5 79862548 79862753 -72674506 - LTR40a LTR ERVL -33 486 276 4 1194 498 315 6 58 chr5 79863909 79864081 -72673178 - RSINE1 SINE B4 0 165 3 4 1194 21 0 0 0 chr5 79864126 79864147 -72673112 + AT_rich Low_complexity Low_complexity 1 21 0 4 1194 556 337 153 11 chr5 79864305 79864780 -72672479 + Lx9 LINE L1 6204 6890 -754 4 1194 2109 132 21 0 chr5 79864807 79865134 -72672125 - L1_Mus4 LINE L1 -60 5823 5490 5 1194 3107 106 34 0 chr5 79865129 79865574 -72671685 + L1_Mus4 LINE L1 5835 6294 -342 5 1194 1294 122 14 32 chr5 79865582 79865802 -72671457 + L1_Mus4 LINE L1 6408 6623 -15 5 1194 25 0 0 0 chr5 79865822 79865847 -72671412 + AT_rich Low_complexity Low_complexity 1 25 0 5 1194 299 50 0 0 chr5 79865853 79865893 -72671366 + Lx9 LINE L1 6929 6968 -676 5 1194 793 328 104 7 chr5 79865932 79866266 -72670993 + MTD LTR MaLR 27 382 -37 5 1194 1453 271 53 33 chr5 79866886 79867374 -72669885 + Lx7 LINE L1 6913 7410 -286 5 1194 285 29 0 0 chr5 79867422 79867456 -72669803 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1194 236 250 43 0 chr5 79867476 79867568 -72669691 + Lx7 LINE L1 7582 7677 -19 5 1194 25 0 0 0 chr5 79868637 79868662 -72668597 + AT_rich Low_complexity Low_complexity 1 25 0 5 1194 256 245 53 26 chr5 79868851 79868897 -72668362 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 5 1194 594 51 0 0 chr5 79868897 79868975 -72668284 + (GA)n Simple_repeat Simple_repeat 2 79 0 5 1194 256 245 53 26 chr5 79868975 79869079 -72668180 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 5 1194 197 43 85 0 chr5 79869111 79869158 -72668101 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 5 1194 1698 138 18 0 chr5 79869834 79870100 -72667159 + Lx2 LINE L1 6373 6643 -354 5 1194 1280 153 5 0 chr5 79870100 79870316 -72666943 + Lx2 LINE L1 6775 6991 -6 5 1194 494 323 30 68 chr5 79870703 79871042 -72666217 + MER2 DNA MER2_type 1 326 -19 5 1194 25 51 0 0 chr5 79871139 79871178 -72666081 + AT_rich Low_complexity Low_complexity 1 39 0 5 1194 6710 134 18 22 chr5 79871654 79873043 -72664216 - Lx LINE L1 -2 6652 5300 5 1194 1063 103 0 0 chr5 79873043 79873188 -72664071 - B1_Mus1 SINE Alu -3 145 1 5 1194 5515 158 9 52 chr5 79873188 79873621 -72663638 - Lx LINE L1 -584 5299 4871 5 1194 35 54 0 0 chr5 79873925 79873981 -72663278 + AT_rich Low_complexity Low_complexity 1 56 0 5 1194 1494 273 120 19 chr5 79874870 79876032 -72661227 + Lx6 LINE L1 5547 6888 -572 5 1194 893 277 73 19 chr5 79876013 79876326 -72660933 + Lx6 LINE L1 7105 7434 -26 5 1194 531 239 82 27 chr5 79876314 79876460 -72660799 + Lx6 LINE L1 6734 6887 -573 5 1194 288 313 17 25 chr5 79876465 79876583 -72660676 + Lx6 LINE L1 6924 7040 -656 5 1194 501 252 16 5 chr5 79876617 79876781 -72660478 + Lx6 LINE L1 7301 7443 -17 5 1194 17759 170 29 27 chr5 79876864 79879791 -72657468 - Lx2 LINE L1 -1 6996 4120 5 1194 2295 110 171 52 chr5 79879791 79880212 -72657047 - MT2C_Mm LTR ERVL 0 475 5 5 1194 17759 174 23 43 chr5 79880212 79882156 -72655103 - Lx2 LINE L1 -1767 4119 2174 5 1194 317 318 174 5 chr5 79882158 79882370 -72654889 - L1VL2 LINE L1 -5897 438 191 5 1194 180 210 30 10 chr5 79883298 79883399 -72653860 + A-rich Low_complexity Low_complexity 3 105 0 5 1194 308 334 0 38 chr5 79883402 79883554 -72653705 + B4 SINE B4 125 267 -25 5 1194 758 204 11 6 chr5 79883885 79884062 -72653197 - L1_Mur2 LINE L1 -1184 4693 4516 5 1194 4577 252 50 6 chr5 79884107 79885305 -72651954 + Lx5 LINE L1 5708 7047 -3 5 1194 225 309 72 14 chr5 79885324 79885462 -72651797 - L1MA6 LINE L1 -288 6012 5867 5 1194 24 32 0 0 chr5 79885625 79885656 -72651603 + AT_rich Low_complexity Low_complexity 1 31 0 5 1194 850 177 25 25 chr5 79886064 79886226 -72651033 + ORR1A3 LTR MaLR 3 164 -162 5 1194 36 53 0 0 chr5 79886301 79886358 -72650901 + AT_rich Low_complexity Low_complexity 1 57 0 5 1194 5121 113 30 9 chr5 79886592 79887395 -72649864 - L1_Mus4 LINE L1 -5 6631 5812 5 1194 1156 186 8 17 chr5 79887419 79887654 -72649605 + RLTR11B LTR ERVK 219 451 -2 5 1194 1369 34 6 11 chr5 79888899 79889079 -72648180 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 1194 908 93 0 52 chr5 79889080 79889216 -72648043 - B1_Mus1 SINE Alu -15 133 5 5 1194 8238 22 11 1 chr5 79889486 79890923 -72646336 - L1Md_A LINE L1 0 6582 5128 5 1194 272 298 9 28 chr5 79890953 79891060 -72646199 - Lx8 LINE L1 -4 7469 7365 5 1194 681 174 0 0 chr5 79891514 79891646 -72645613 + GA-rich Low_complexity Low_complexity 1 132 0 5 1194 376 274 27 10 chr5 79892412 79892570 -72644689 - ORR1D1 LTR MaLR 0 370 214 5 1194 1337 276 87 22 chr5 79892586 79893079 -72644180 - ORR1D1-int LTR MaLR -29 1341 817 5 1194 735 315 22 50 chr5 79893773 79894094 -72643165 + MTD LTR MaLR 2 313 -106 5 1194 400 62 15 15 chr5 79894105 79894170 -72643089 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 5 1194 1026 64 21 0 chr5 79894317 79894457 -72642802 + B1_Mus1 SINE Alu 2 144 -4 5 1194 816 111 0 0 chr5 79894457 79894583 -72642676 + (CAAAA)n Simple_repeat Simple_repeat 5 130 0 5 1194 21 36 0 0 chr5 79894884 79894912 -72642347 + AT_rich Low_complexity Low_complexity 1 28 0 5 1194 501 17 0 0 chr5 79896013 79896071 -72641188 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 5 1194 1124 71 0 0 chr5 79896073 79896214 -72641045 - B1_Mus2 SINE Alu -6 141 1 5 1194 26 0 0 0 chr5 79896266 79896292 -72640967 + AT_rich Low_complexity Low_complexity 1 26 0 5 1194 21 36 0 0 chr5 79896707 79896735 -72640524 + AT_rich Low_complexity Low_complexity 1 28 0 5 1194 798 342 30 61 chr5 79896894 79897289 -72639970 - LTR40b LTR ERVL 0 462 80 5 1194 613 312 48 57 chr5 79897640 79897973 -72639286 + RLTR14 LTR ERV1 4 333 -49 5 1194 1126 205 32 16 chr5 79897977 79898230 -72639029 + RMER1C Other Other 1086 1342 0 5 1194 196 85 42 21 chr5 79898414 79898462 -72638797 + (TTAA)n Simple_repeat Simple_repeat 3 51 0 5 1194 1228 294 38 94 chr5 79898489 79899010 -72638249 - RMER15 LTR ERVL -66 509 18 5 1194 686 309 70 54 chr5 79899393 79899691 -72637568 - RMER15 LTR ERVL -44 531 229 5 1194 21 57 0 0 chr5 79899962 79899997 -72637262 + AT_rich Low_complexity Low_complexity 1 35 0 5 1194 295 299 82 33 chr5 79900285 79900468 -72636791 - Lx8 LINE L1 -1252 6221 6030 5 1194 282 196 0 0 chr5 79900540 79900591 -72636668 + MTC LTR MaLR 1 51 -370 5 1194 918 167 0 0 chr5 79900591 79900741 -72636518 + Lx LINE L1 6197 6346 -308 5 1194 649 331 113 12 chr5 79900849 79901176 -72636083 + Lx8 LINE L1 6846 7205 -268 5 1194 576 0 0 0 chr5 79901252 79901316 -72635943 + (GA)n Simple_repeat Simple_repeat 1 64 0 5 1194 701 247 18 85 chr5 79901325 79901558 -72635701 + Lx9 LINE L1 7303 7527 -117 5 1194 327 25 0 0 chr5 79901558 79901598 -72635661 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1194 701 247 18 85 chr5 79901598 79901705 -72635554 + Lx9 LINE L1 7528 7620 -24 5 1194 22 0 0 0 chr5 79902735 79902757 -72634502 + AT_rich Low_complexity Low_complexity 1 22 0 5 1194 1293 88 73 0 chr5 79903628 79903832 -72633427 - L1_Mus3 LINE L1 -1 6637 6419 5 1194 24 0 0 0 chr5 79903836 79903860 -72633399 + AT_rich Low_complexity Low_complexity 1 24 0 5 1194 462 36 0 0 chr5 79904416 79904472 -72632787 + (T)n Simple_repeat Simple_repeat 1 56 0 5 1194 1276 269 42 97 chr5 79904884 79905510 -72631749 + Lx7 LINE L1 7106 7696 0 5 1194 2134 206 39 37 chr5 79905638 79906148 -72631111 + Lx5 LINE L1 5701 6211 -839 5 1194 436 132 63 42 chr5 79906153 79906248 -72631011 - L1_Mur2 LINE L1 -814 5072 4976 5 1194 6591 172 4 52 chr5 79906239 79907597 -72629662 - L1_Mur2 LINE L1 -1203 4674 3382 5 1194 4405 148 42 15 chr5 79907594 79908644 -72628615 + Lx LINE L1 5482 6561 -5 5 1194 1112 199 118 16 chr5 79908656 79908901 -72628358 + Lx5 LINE L1 6636 6905 -145 5 1194 3077 63 2 8 chr5 79908903 79909301 -72627958 - MTA_Mm LTR MaLR 0 396 1 5 1194 6992 98 11 69 chr5 79909301 79910466 -72626793 - MTA_Mm-int LTR MaLR 0 1098 1 5 1194 1262 57 6 6 chr5 79910467 79910642 -72626617 - MTA_Mm LTR MaLR -1 399 225 5 1194 268 71 0 106 chr5 79910625 79910672 -72626587 + MTB LTR MaLR 359 400 0 5 1194 506 209 88 15 chr5 79910672 79910808 -72626451 + Lx5 LINE L1 6902 7047 -3 5 1194 25 31 0 0 chr5 79912354 79912386 -72624873 + AT_rich Low_complexity Low_complexity 1 32 0 5 1194 28 48 0 0 chr5 79912631 79912673 -72624586 + AT_rich Low_complexity Low_complexity 1 42 0 5 1194 183 156 0 0 chr5 79913073 79913105 -72624154 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1194 270 0 0 0 chr5 79914436 79914466 -72622793 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5 1194 1821 166 150 24 chr5 79914466 79914880 -72622379 - Lx3_Mus LINE L1 -21 6988 6523 5 1194 489 127 0 0 chr5 79915910 79915989 -72621270 + (TA)n Simple_repeat Simple_repeat 1 79 0 5 1194 434 335 112 63 chr5 79917482 79917849 -72619410 + MTEa LTR MaLR 1 375 -4 5 1194 305 296 56 37 chr5 79918084 79918397 -72618862 + L1MCa LINE L1 2238 2550 -3771 5 1194 557 332 38 21 chr5 79918802 79919305 -72617954 + L1MCa LINE L1 5362 5877 -657 5 1194 1359 228 20 10 chr5 79919551 79919852 -72617407 + MT2A LTR ERVL 3 306 -227 5 1194 205 208 41 14 chr5 79919940 79920013 -72617246 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 1194 1746 197 80 0 chr5 79920183 79920548 -72616711 - ORR1B1 LTR MaLR 0 394 1 5 1194 7217 55 4 10 chr5 79921001 79921935 -72615324 + L1Md_F2 LINE L1 5653 6581 -1 5 1194 940 245 56 82 chr5 79922143 79922415 -72614844 + ORR1C2 LTR MaLR 63 332 -52 5 1194 1092 89 7 0 chr5 79922415 79922561 -72614698 - B1_Mm SINE Alu 0 147 1 5 1194 940 236 58 83 chr5 79922561 79922602 -72614657 + ORR1C2 LTR MaLR 333 370 -14 5 1194 46 68 0 0 chr5 79923150 79923238 -72614021 + AT_rich Low_complexity Low_complexity 1 88 0 5 1194 1083 78 0 14 chr5 79924246 79924390 -72612869 + B1_Mm SINE Alu 1 142 -5 5 1194 1081 344 99 20 chr5 79925331 79926026 -72611233 + Lx8 LINE L1 6724 7473 0 5 1194 39 38 0 0 chr5 79926055 79926108 -72611151 + AT_rich Low_complexity Low_complexity 1 53 0 5 1194 298 207 51 8 chr5 79926211 79926328 -72610931 + (TA)n Simple_repeat Simple_repeat 1 122 0 5 1194 1911 266 115 55 chr5 79926328 79927091 -72610168 - ORR1B2-int LTR MaLR -561 809 1 5 1194 957 239 78 50 chr5 79927091 79927448 -72609811 - ORR1B2 LTR MaLR 0 367 1 5 1194 588 14 0 0 chr5 79927817 79927886 -72609373 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 5 1194 396 0 0 0 chr5 79928812 79928856 -72608403 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1194 473 327 36 30 chr5 79929243 79929410 -72607849 - B3A SINE B2 -28 170 3 5 1194 919 284 23 8 chr5 79929451 79929710 -72607549 - Lx5 LINE L1 -264 6786 6524 5 1194 654 118 20 75 chr5 79929706 79929853 -72607406 + RMER1C Other Other 925 1063 -279 5 1194 2353 136 37 3 chr5 79929841 79930224 -72607035 + Lx4A LINE L1 6258 6653 -405 5 1194 356 339 31 26 chr5 79930273 79930464 -72606795 - Lx9 LINE L1 -196 7448 7257 5 1194 239 310 17 0 chr5 79930533 79930591 -72606668 - Lx8 LINE L1 -163 7310 7252 5 1194 236 314 216 8 chr5 79930818 79931072 -72606187 - Lx8 LINE L1 -417 7056 6750 5 1194 27 0 0 0 chr5 79931108 79931135 -72606124 + AT_rich Low_complexity Low_complexity 1 27 0 6 1194 454 313 48 37 chr5 79931245 79931434 -72605825 - Lx8 LINE L1 -1049 6424 6234 5 1194 22 0 0 0 chr5 79931578 79931600 -72605659 + AT_rich Low_complexity Low_complexity 1 22 0 6 1194 21 0 0 0 chr5 79931683 79931704 -72605555 + AT_rich Low_complexity Low_complexity 1 21 0 6 1194 390 42 0 0 chr5 79931796 79931844 -72605415 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1194 383 303 57 8 chr5 79931850 79931973 -72605286 - ID_B1 SINE B4 -9 215 87 6 1194 257 320 88 20 chr5 79932033 79932135 -72605124 + B3 SINE B2 4 112 -104 6 1194 453 19 0 0 chr5 79932174 79932228 -72605031 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1194 252 0 0 0 chr5 79932228 79932255 -72605004 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1194 27 81 0 0 chr5 79932255 79932317 -72604942 + AT_rich Low_complexity Low_complexity 1 62 0 6 1194 761 284 124 53 chr5 79933804 79933950 -72603309 + ORR1D2 LTR MaLR 1 142 -228 6 1194 534 79 0 0 chr5 79933950 79934026 -72603233 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 1194 761 284 124 53 chr5 79934026 79934218 -72603041 + ORR1D2 LTR MaLR 143 362 -8 6 1194 550 259 42 0 chr5 79934945 79935088 -72602171 + MLT1C LTR MaLR 316 464 -3 6 1194 1491 224 86 43 chr5 79935297 79935806 -72601453 + RMER6C LTR ERVK 21 551 -139 6 1194 1100 216 0 0 chr5 79935812 79936016 -72601243 - Lx4B LINE L1 -399 6659 6456 6 1194 456 143 60 0 chr5 79936020 79936104 -72601155 + Lx5 LINE L1 6340 6428 -622 6 1194 1554 264 11 3 chr5 79936090 79936454 -72600805 + Lx5 LINE L1 6543 6909 -141 6 1194 2157 218 35 50 chr5 79937534 79938075 -72599184 + Lx5 LINE L1 6477 7009 -41 6 1194 364 272 135 47 chr5 79938162 79938355 -72598904 - B3 SINE B2 -6 210 1 6 1194 183 42 0 0 chr5 79938768 79938792 -72598467 + (CAA)n Simple_repeat Simple_repeat 1 24 0 6 1194 549 304 6 30 chr5 79939036 79939202 -72598057 + B4 SINE B4 60 221 -71 6 1194 24 0 0 0 chr5 79939453 79939477 -72597782 + AT_rich Low_complexity Low_complexity 1 24 0 6 1194 262 276 101 22 chr5 79939883 79939972 -72597287 - L2 LINE L2 -467 2952 2857 6 1194 507 177 0 0 chr5 79940054 79940150 -72597109 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 1194 180 304 54 0 chr5 79941071 79941127 -72596132 + L3 LINE CR1 4133 4191 -298 6 1194 3615 131 55 7 chr5 79941675 79942275 -72594984 + Lx2 LINE L1 6368 6996 -1 6 1194 487 278 9 16 chr5 79942812 79942962 -72594297 + B1_Mur4 SINE Alu 2 150 0 6 1194 491 321 72 53 chr5 79942987 79943194 -72594065 + B3A SINE B2 5 215 -1 6 1194 224 270 16 0 chr5 79943537 79943600 -72593659 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1194 21 0 0 0 chr5 79944721 79944742 -72592517 + AT_rich Low_complexity Low_complexity 1 21 0 6 1194 258 242 0 0 chr5 79944878 79944940 -72592319 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1194 550 346 96 11 chr5 79945330 79945590 -72591669 - B4 SINE B4 -7 285 4 6 1194 2477 11 0 0 chr5 79946571 79946853 -72590406 + L1Md_A LINE L1 6301 6582 0 6 1194 30 0 0 0 chr5 79947003 79947033 -72590226 + AT_rich Low_complexity Low_complexity 1 30 0 6 1194 491 154 8 0 chr5 79947154 79947271 -72589988 + (TG)n Simple_repeat Simple_repeat 2 119 0 6 1194 296 309 0 0 chr5 79947289 79947373 -72589886 + (TG)n Simple_repeat Simple_repeat 2 85 0 6 1194 444 99 0 0 chr5 79947387 79947458 -72589801 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1194 252 304 0 0 chr5 79947462 79947518 -72589741 - ID2 SINE ID -27 56 1 6 1194 35 24 0 0 chr5 79948119 79948161 -72589098 + AT_rich Low_complexity Low_complexity 1 42 0 6 1194 354 176 0 0 chr5 79948984 79949069 -72588190 + CT-rich Low_complexity Low_complexity 2 86 0 6 1194 705 314 49 28 chr5 79949161 79949449 -72587810 + Lx8 LINE L1 6381 6674 -799 6 1194 1724 51 61 90 chr5 79949815 79950094 -72587165 + L1_Mus2 LINE L1 6030 6300 -266 6 1194 239 390 0 0 chr5 79950088 79950170 -72587089 - Lx6 LINE L1 -147 7313 7232 6 1194 346 251 19 70 chr5 79950143 79950303 -72586956 + Lx7 LINE L1 7558 7696 0 6 1194 405 125 14 0 chr5 79950642 79950714 -72586545 + Lx5 LINE L1 6975 7047 -3 6 1194 199 71 48 0 chr5 79950812 79950854 -72586405 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1194 433 336 43 0 chr5 79951778 79951918 -72585341 + Lx8 LINE L1 7173 7318 -155 6 1194 22 0 0 0 chr5 79952053 79952075 -72585184 + AT_rich Low_complexity Low_complexity 1 22 0 6 1194 435 264 0 0 chr5 79953563 79953654 -72583605 - PB1D10 SINE Alu -1 116 26 6 1195 2345 187 122 13 chr5 79953979 79954576 -72582683 + RMER6C LTR ERVK 3 664 -26 6 1195 296 357 94 94 chr5 79954851 79955203 -72582056 - ORR1E LTR MaLR -4 355 4 6 1195 22 0 0 0 chr5 79957043 79957065 -72580194 + AT_rich Low_complexity Low_complexity 1 22 0 6 1195 234 346 57 9 chr5 79957215 79957320 -72579939 + PB1D10 SINE Alu 6 115 -2 6 1195 21 36 0 0 chr5 79958451 79958479 -72578780 + AT_rich Low_complexity Low_complexity 1 28 0 6 1195 31 0 0 0 chr5 79958507 79958538 -72578721 + AT_rich Low_complexity Low_complexity 1 31 0 6 1195 25 0 0 0 chr5 79958688 79958713 -72578546 + AT_rich Low_complexity Low_complexity 1 25 0 6 1195 375 275 11 11 chr5 79958887 79958979 -72578280 + B3A SINE B2 21 112 -86 6 1195 25 0 0 0 chr5 79958986 79959011 -72578248 + AT_rich Low_complexity Low_complexity 1 25 0 6 1195 486 0 0 0 chr5 79959114 79959168 -72578091 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 6 1195 23 33 0 0 chr5 79959251 79959281 -72577978 + AT_rich Low_complexity Low_complexity 1 30 0 6 1195 198 0 0 0 chr5 79959410 79959432 -72577827 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1195 25 0 0 0 chr5 79960316 79960341 -72576918 + AT_rich Low_complexity Low_complexity 1 25 0 6 1195 33 56 0 0 chr5 79960377 79960431 -72576828 + AT_rich Low_complexity Low_complexity 1 54 0 6 1195 1951 78 0 31 chr5 79960431 79960721 -72576538 + L1Md_F2 LINE L1 6301 6581 -1 6 1195 33 80 0 0 chr5 79960823 79960898 -72576361 + AT_rich Low_complexity Low_complexity 1 75 0 6 1195 618 323 76 54 chr5 79961276 79961721 -72575538 + Lx9 LINE L1 6962 7416 -228 6 1195 468 0 0 0 chr5 79961721 79961773 -72575486 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1195 27 0 0 0 chr5 79961786 79961813 -72575446 + AT_rich Low_complexity Low_complexity 1 27 0 6 1195 904 340 17 11 chr5 79962102 79962456 -72574803 - Lx8 LINE L1 -734 6739 6384 6 1195 655 304 22 67 chr5 79962535 79962849 -72574410 - Lx9 LINE L1 -209 7435 7136 6 1195 209 120 0 107 chr5 79962902 79962958 -72574301 + G-rich Low_complexity Low_complexity 2 51 0 6 1195 214 68 68 0 chr5 79963883 79963927 -72573332 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1195 230 83 62 0 chr5 79964159 79964207 -72573052 - L1_Mus3 LINE L1 -8 6630 6580 6 1195 2151 107 7 3 chr5 79964192 79964501 -72572758 - L1_Mm LINE L1 -306 5577 5268 6 1195 1468 238 146 99 chr5 79965056 79965640 -72571619 + RMER19C LTR ERVK 1 611 0 6 1195 47 0 0 0 chr5 79965802 79965849 -72571410 + AT_rich Low_complexity Low_complexity 1 47 0 6 1195 372 132 0 0 chr5 79965850 79965918 -72571341 - Lx3A LINE L1 -11 6970 6903 6 1195 4356 51 12 2 chr5 79965919 79966490 -72570769 + MT-int LTR MaLR 403 979 -119 6 1195 3023 43 0 5 chr5 79966490 79966866 -72570393 + L1Md_F3 LINE L1 6194 6567 -17 6 1195 284 0 28 0 chr5 79966871 79966907 -72570352 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 6 1195 3156 137 11 11 chr5 79966907 79967430 -72569829 - Lx3A LINE L1 -449 6532 6010 6 1195 39 22 0 0 chr5 79967435 79967481 -72569778 + AT_rich Low_complexity Low_complexity 1 46 0 6 1195 339 118 32 32 chr5 79967481 79967604 -72569655 + (TAAA)n Simple_repeat Simple_repeat 3 125 0 6 1195 22 0 0 0 chr5 79967604 79967626 -72569633 + AT_rich Low_complexity Low_complexity 1 22 0 6 1195 2713 41 0 9 chr5 79967843 79968186 -72569073 - L1Md_F2 LINE L1 0 6582 6243 6 1195 2295 37 0 0 chr5 79968187 79968456 -72568803 + L1Md_F2 LINE L1 5972 6240 -342 6 1195 633 151 0 0 chr5 79968455 79968561 -72568698 - Lx3_Mus LINE L1 -969 6040 5935 6 1195 493 108 0 57 chr5 79968562 79968650 -72568609 + Lx3C LINE L1 5850 5932 -1044 6 1195 24 53 0 0 chr5 79968727 79968765 -72568494 + AT_rich Low_complexity Low_complexity 1 38 0 6 1195 920 276 54 23 chr5 79968937 79969197 -72568062 + Lx6 LINE L1 7189 7456 -4 6 1195 506 224 10 12 chr5 79969375 79969515 -72567744 + L1M2 LINE L1 5496 5633 -523 6 1195 703 172 97 12 chr5 79969538 79969703 -72567556 + B2_Mm2 SINE B2 3 181 -14 6 1195 3399 195 40 14 chr5 79969795 79970523 -72566736 + Lx2B LINE L1 6253 6999 -1 6 1195 7215 134 7 7 chr5 79970569 79972216 -72565043 + L1VL4 LINE L1 353 1998 -1561 6 1195 21 36 0 0 chr5 79973087 79973115 -72564144 + AT_rich Low_complexity Low_complexity 1 28 0 6 1195 520 224 12 0 chr5 79973467 79973637 -72563622 + (TA)n Simple_repeat Simple_repeat 1 172 0 6 1195 281 117 17 0 chr5 79973654 79973714 -72563545 + (TCTCTG)n Simple_repeat Simple_repeat 6 66 0 6 1195 727 336 21 14 chr5 79973799 79974086 -72563173 + Lx9 LINE L1 6434 6722 -922 6 1195 34 65 0 0 chr5 79974227 79974289 -72562970 + AT_rich Low_complexity Low_complexity 1 62 0 6 1195 211 336 71 26 chr5 79974550 79974663 -72562596 + L2 LINE L2 2660 2777 -642 6 1195 733 117 4 34 chr5 79974723 79974971 -72562288 + (TG)n Simple_repeat Simple_repeat 1 240 0 6 1195 352 340 0 0 chr5 79975060 79975154 -72562105 - RSINE1 SINE B4 -70 95 2 6 1195 477 124 0 0 chr5 79976440 79976537 -72560722 + (A)n Simple_repeat Simple_repeat 1 97 0 6 1195 604 344 9 31 chr5 79977930 79978155 -72559104 + B4A SINE B4 5 224 -68 6 1195 321 176 0 0 chr5 79978156 79978230 -72559029 + A-rich Low_complexity Low_complexity 1 74 0 6 1195 1100 124 0 6 chr5 79978243 79978422 -72558837 + (GGGAA)n Simple_repeat Simple_repeat 3 180 0 6 1195 407 152 58 52 chr5 79978429 79978598 -72558661 + GA-rich Low_complexity Low_complexity 4 173 0 6 1195 754 37 28 18 chr5 79978598 79978707 -72558552 + (GAAAA)n Simple_repeat Simple_repeat 1 110 0 7 1195 278 158 0 38 chr5 79978765 79978844 -72558415 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 1195 22 0 0 0 chr5 79979636 79979658 -72557601 + AT_rich Low_complexity Low_complexity 1 22 0 7 1195 24 32 0 0 chr5 79979708 79979739 -72557520 + AT_rich Low_complexity Low_complexity 1 31 0 7 1195 236 77 26 0 chr5 79979773 79979812 -72557447 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1195 373 308 68 7 chr5 79980142 79980289 -72556970 - B4A SINE B4 -4 288 133 7 1195 28 0 0 0 chr5 79980773 79980801 -72556458 + AT_rich Low_complexity Low_complexity 1 28 0 7 1195 504 264 117 42 chr5 79981304 79981504 -72555755 - B3A SINE B2 0 216 3 7 1195 862 216 142 13 chr5 79981553 79981792 -72555467 - Lx2B LINE L1 -8 6992 6723 7 1195 22 0 0 0 chr5 79981932 79981954 -72555305 + AT_rich Low_complexity Low_complexity 1 22 0 7 1195 1252 249 102 21 chr5 79982430 79982894 -72554365 - RMER6C LTR ERVK -2 688 227 7 1195 180 77 0 0 chr5 79982894 79982920 -72554339 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1195 1252 274 60 67 chr5 79982920 79983275 -72553984 - RMER6C LTR ERVK -337 353 1 7 1195 441 0 0 0 chr5 79983418 79983467 -72553792 + (TA)n Simple_repeat Simple_repeat 2 50 0 7 1195 378 0 0 0 chr5 79983604 79983646 -72553613 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 1195 243 0 0 0 chr5 79984721 79984748 -72552511 + (TC)n Simple_repeat Simple_repeat 2 28 0 7 1195 780 69 0 0 chr5 79984748 79984863 -72552396 + (TG)n Simple_repeat Simple_repeat 1 116 0 7 1195 24 0 0 0 chr5 79984955 79984979 -72552280 + AT_rich Low_complexity Low_complexity 1 24 0 7 1195 22 0 0 0 chr5 79985132 79985154 -72552105 + AT_rich Low_complexity Low_complexity 1 22 0 7 1195 313 295 17 103 chr5 79985794 79985911 -72551348 - B4A SINE B4 -172 120 14 7 1195 180 135 0 0 chr5 79986416 79986453 -72550806 + (TTATA)n Simple_repeat Simple_repeat 1 37 0 7 1195 5438 224 59 10 chr5 79986909 79988217 -72549042 + Lx2B LINE L1 5629 7000 0 7 1195 21 36 0 0 chr5 79988916 79988944 -72548315 + AT_rich Low_complexity Low_complexity 1 28 0 7 1195 3132 71 2 12 chr5 79989007 79989433 -72547826 + L1Md_F2 LINE L1 6161 6582 0 7 1195 225 330 75 0 chr5 79990011 79990117 -72547142 - MLT2B2 LTR ERVL -34 528 415 7 1195 261 0 0 0 chr5 79991854 79991883 -72545376 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 1195 3507 244 31 8 chr5 79991992 79992878 -72544381 + Lx5 LINE L1 5722 6625 -425 7 1195 2586 39 0 0 chr5 79992867 79993176 -72544083 - L1Md_F2 LINE L1 -238 6344 6036 7 1195 1745 52 8 21 chr5 79993176 79993412 -72543847 + L1Md_F2 LINE L1 6350 6582 0 7 1195 1112 259 179 43 chr5 79993590 79993987 -72543272 + Lx5 LINE L1 6600 7050 0 7 1195 369 174 0 0 chr5 79993991 79994060 -72543199 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 1195 25 0 0 0 chr5 79994491 79994516 -72542743 + AT_rich Low_complexity Low_complexity 1 25 0 7 1195 1649 255 26 52 chr5 79994988 79995451 -72541808 - Lx5 LINE L1 0 7050 6600 7 1195 1096 194 128 0 chr5 79995452 79995716 -72541543 - L1_Mur2 LINE L1 -2526 3351 3051 7 1195 279 0 0 0 chr5 79995716 79995747 -72541512 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1195 1096 194 128 0 chr5 79995747 79995771 -72541488 - L1_Mur2 LINE L1 -2827 3050 3027 7 1195 9928 161 150 15 chr5 79995796 79997714 -72539545 - Lx LINE L1 -7 6647 4643 7 1195 324 19 37 19 chr5 79997714 79997768 -72539491 + (TTTTG)n Simple_repeat Simple_repeat 4 58 0 7 1195 9928 203 295 25 chr5 79997768 79999999 -72537260 - Lx LINE L1 -1244 4642 1572 7 1195 597 110 30 0 chr5 80000000 80000100 -72537159 - L1_Mur2 LINE L1 -4309 1568 1466 1 1195 555 280 0 47 chr5 80000636 80000786 -72536473 + B1_Mus1 SINE Alu 6 148 0 2 1195 21 0 0 0 chr5 80000938 80000959 -72536300 + AT_rich Low_complexity Low_complexity 1 21 0 3 1195 201 132 0 0 chr5 80001106 80001144 -72536115 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1195 29 47 0 0 chr5 80001534 80001577 -72535682 + AT_rich Low_complexity Low_complexity 1 43 0 5 1195 253 218 18 0 chr5 80001700 80001755 -72535504 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1195 853 311 220 29 chr5 80001789 80002324 -72534935 - Lx7 LINE L1 -392 7304 6668 7 1195 204 40 0 0 chr5 80002800 80002825 -72534434 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1195 2073 232 37 26 chr5 80002829 80003320 -72533939 - RMER15 LTR ERVL -78 497 2 9 1195 247 291 0 0 chr5 80004848 80004903 -72532356 + B3A SINE B2 21 75 -123 1 1195 435 92 0 0 chr5 80004911 80004976 -72532283 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1195 240 59 0 0 chr5 80005295 80005329 -72531930 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1195 262 67 22 22 chr5 80005329 80005375 -72531884 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1195 25 0 0 0 chr5 80005801 80005826 -72531433 + AT_rich Low_complexity Low_complexity 1 25 0 1 1195 270 56 0 0 chr5 80005937 80005973 -72531286 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1195 2909 53 3 0 chr5 80006011 80006367 -72530892 + IAPEY2_LTR LTR ERVK 1 357 0 1 1195 739 152 50 50 chr5 80006367 80006526 -72530733 + IAPLTR4_I LTR ERVK 22 180 -1290 1 1195 4758 169 6 37 chr5 80006525 80007418 -72529841 + IAPLTR4_I LTR ERVK 546 1410 -60 1 1195 3083 80 5 0 chr5 80007412 80007813 -72529446 + IAPEY3-int LTR ERVK 1580 1982 -5698 1 1195 3466 76 9 0 chr5 80007790 80008238 -72529021 + IAPEY3-int LTR ERVK 2238 2689 -4991 1 1195 196 363 53 9 chr5 80008253 80008367 -72528892 + L3b LINE CR1 335 453 -29 1 1195 2876 172 24 73 chr5 80008394 80009022 -72528237 + MMERVK10C-int LTR ERVK 6985 7581 0 2 1195 2998 50 0 0 chr5 80009022 80009379 -72527880 + IAPEY2_LTR LTR ERVK 1 357 0 2 1195 258 32 0 0 chr5 80009381 80009412 -72527847 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1195 1344 217 1 19 chr5 80009674 80009985 -72527274 - Lx3C LINE L1 -226 6750 6471 2 1195 756 43 0 86 chr5 80010769 80010897 -72526362 + L1Md_F3 LINE L1 6450 6566 -18 2 1195 25 0 0 0 chr5 80010898 80010923 -72526336 + AT_rich Low_complexity Low_complexity 1 25 0 2 1195 730 349 27 32 chr5 80011175 80011336 -72525923 - Lx8 LINE L1 -524 6949 6791 2 1195 2166 130 9 0 chr5 80011336 80011660 -72525599 + ORR1A2 LTR MaLR 1 327 0 2 1195 730 349 27 32 chr5 80011660 80011901 -72525358 - Lx8 LINE L1 -683 6790 6549 2 1195 2839 218 76 0 chr5 80012444 80013063 -72524196 - Lx3C LINE L1 -3 6973 6308 2 1195 429 250 25 44 chr5 80013271 80013430 -72523829 + RLTR43A LTR ERVK 209 364 0 2 1195 5705 253 57 13 chr5 80013557 80014309 -72522950 - Lx6 LINE L1 0 7460 6651 2 1195 528 246 177 72 chr5 80014309 80014642 -72522617 - RLTR9A LTR ERVK 0 368 1 3 1195 5705 253 57 13 chr5 80014642 80015317 -72521942 - Lx6 LINE L1 -810 6650 5971 2 1195 2914 257 39 3 chr5 80015316 80016041 -72521218 - Lx7 LINE L1 -812 6884 6134 3 1195 21 0 0 0 chr5 80016448 80016469 -72520790 + AT_rich Low_complexity Low_complexity 1 21 0 3 1195 2363 134 80 12 chr5 80016481 80016895 -72520364 + Lx2 LINE L1 6537 6978 -19 3 1195 258 260 29 96 chr5 80016915 80017051 -72520208 - L1_Mur1 LINE L1 -1311 4575 4449 3 1195 437 213 147 45 chr5 80017849 80018006 -72519253 + MER76 LTR ERVL 519 691 0 3 1195 201 167 0 0 chr5 80019061 80019097 -72518162 + T-rich Low_complexity Low_complexity 5 40 0 3 1195 3190 192 71 21 chr5 80019127 80019803 -72517456 - Lx4B LINE L1 -8 7050 6341 3 1195 3444 199 50 3 chr5 80019817 80020503 -72516756 + Lx4B LINE L1 5606 6323 -735 3 1195 265 302 8 40 chr5 80021674 80021798 -72515461 - Lx4B LINE L1 -5 7053 6934 3 1195 2296 258 29 75 chr5 80021820 80022409 -72514850 - Lx6 LINE L1 -5 7455 6881 3 1195 477 0 0 0 chr5 80022409 80022462 -72514797 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1195 465 19 0 0 chr5 80022464 80022518 -72514741 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1195 2296 258 29 75 chr5 80022518 80022683 -72514576 - Lx6 LINE L1 -580 6880 6733 3 1195 225 154 0 0 chr5 80023012 80023051 -72514208 + (TA)n Simple_repeat Simple_repeat 1 39 0 4 1195 1567 184 4 8 chr5 80023256 80023594 -72513665 - MYSERV16_I-int LTR ERVK -75 2251 1957 4 1195 3323 157 26 8 chr5 80023623 80024265 -72512994 - MYSERV16_I-int LTR ERVK -585 1741 1088 4 1195 522 43 0 0 chr5 80024315 80024384 -72512875 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 4 1195 696 291 5 16 chr5 80024389 80024581 -72512678 - ORR1E LTR MaLR -168 191 2 4 1195 184 284 48 154 chr5 80024654 80024758 -72512501 - L2b LINE L2 -8 3367 3275 4 1195 385 309 18 63 chr5 80025161 80025382 -72511877 - L1MC4a LINE L1 -1592 6526 6316 4 1195 604 153 0 22 chr5 80025569 80025750 -72511509 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 4 1195 213 108 0 0 chr5 80026584 80026621 -72510638 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1195 299 287 40 16 chr5 80026855 80026979 -72510280 - L1MC4a LINE L1 -1362 5020 4894 4 1195 6802 149 14 4 chr5 80027328 80028910 -72508349 - Lx LINE L1 -4 6650 5054 5 1195 7352 163 26 7 chr5 80028899 80029851 -72507408 + L1_Mm LINE L1 3661 4622 -1261 5 1195 6117 69 14 12 chr5 80029851 80030658 -72506601 + RLTR13C2 LTR ERVK 1 808 0 5 1195 7352 163 26 7 chr5 80030658 80031077 -72506182 + L1_Mm LINE L1 4623 5059 -824 5 1195 284 355 45 0 chr5 80031192 80031412 -72505847 - L1MC4a LINE L1 -1918 4458 4229 4 1195 5122 184 34 16 chr5 80031416 80032951 -72504308 - Lx3_Mus LINE L1 -128 6872 4931 5 1195 1693 160 33 244 chr5 80032968 80033786 -72503473 + L1_Mur1 LINE L1 4101 4745 -1141 5 1195 461 301 229 17 chr5 80033895 80034356 -72502903 - L1MC4a LINE L1 -4700 1684 1152 4 1195 282 308 62 172 chr5 80034668 80035005 -72502254 + RMER20B LTR ERVK 258 557 -70 5 1195 1175 94 0 0 chr5 80035113 80035273 -72501986 + L1_Mus3 LINE L1 6372 6531 -107 5 1195 180 0 0 0 chr5 80035495 80035515 -72501744 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 5 1195 5390 102 21 8 chr5 80035701 80036499 -72500760 - L1_Mus3 LINE L1 0 6638 5830 5 1195 414 0 0 0 chr5 80036750 80036796 -72500463 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1195 792 207 85 10 chr5 80037278 80037478 -72499781 + B3 SINE B2 1 215 -1 6 1195 406 322 13 13 chr5 80037906 80038060 -72499199 - Lx8 LINE L1 -321 7152 6999 6 1195 821 132 0 15 chr5 80038068 80038199 -72499060 + L1_Mm LINE L1 4723 4851 -1032 6 1195 431 294 0 8 chr5 80038195 80038315 -72498944 - Lx9 LINE L1 -523 7121 7003 6 1195 21 36 0 0 chr5 80038315 80038343 -72498916 + AT_rich Low_complexity Low_complexity 1 28 0 6 1195 1492 220 11 28 chr5 80038349 80038705 -72498554 + L1VL4 LINE L1 360 709 -5593 6 1195 6634 171 36 3 chr5 80038674 80039937 -72497322 + L1_Mus4 LINE L1 4503 5806 -77 6 1195 18408 77 2 7 chr5 80039913 80042428 -72494831 + L1Md_F2 LINE L1 3086 5586 -297 6 1195 7890 47 14 2 chr5 80042428 80043409 -72493850 + L1Md_F2 LINE L1 5587 6579 -3 6 1195 4679 148 48 5 chr5 80043425 80044222 -72493037 + L1_Mus4 LINE L1 5783 6613 -23 6 1195 270 0 0 0 chr5 80044222 80044252 -72493007 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1195 480 163 0 0 chr5 80044252 80044338 -72492921 + GA-rich Low_complexity Low_complexity 3 88 0 7 1195 5290 119 2 21 chr5 80044345 80045168 -72492091 + L1_Mus4 LINE L1 5829 6636 0 6 1195 952 324 63 53 chr5 80045195 80045832 -72491427 - Lx9 LINE L1 -664 6980 6170 6 1195 375 89 0 0 chr5 80045832 80045888 -72491371 + (TA)n Simple_repeat Simple_repeat 2 57 0 7 1195 677 314 46 67 chr5 80045888 80045976 -72491283 - Lx9 LINE L1 -1304 6169 6080 6 1195 508 170 13 0 chr5 80045998 80046157 -72491102 + CT-rich Low_complexity Low_complexity 2 162 0 7 1195 573 15 0 0 chr5 80046160 80046226 -72491033 + (CA)n Simple_repeat Simple_repeat 2 67 0 7 1195 1026 252 73 115 chr5 80046419 80046827 -72490432 + MTD LTR MaLR 15 405 -14 7 1195 199 385 20 59 chr5 80047075 80047227 -72490032 - L2a LINE L2 -1 3425 3280 7 1195 808 128 84 39 chr5 80047549 80047704 -72489555 - MTC LTR MaLR -250 171 10 7 1195 887 268 19 0 chr5 80047868 80048073 -72489186 - B3 SINE B2 -5 211 3 7 1195 240 100 0 0 chr5 80048951 80048991 -72488268 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1195 4103 33 2 0 chr5 80048997 80049481 -72487778 - L1Md_T LINE L1 -1 6581 6097 7 1195 1119 69 7 0 chr5 80049496 80049640 -72487619 - B1_Mus1 SINE Alu -3 145 1 8 1195 339 314 82 77 chr5 80049758 80050137 -72487122 - L1MEc LINE L1 -5364 1036 656 8 1195 456 19 0 0 chr5 80050366 80050419 -72486840 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 1195 975 162 0 0 chr5 80050419 80050658 -72486601 + GA-rich Low_complexity Low_complexity 1 239 0 8 1195 849 140 0 0 chr5 80050803 80050939 -72486320 + B1_Mus1 SINE Alu 1 136 -12 8 1195 252 0 0 0 chr5 80050941 80050969 -72486290 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 1195 389 335 44 71 chr5 80051019 80051202 -72486057 - B3A SINE B2 -7 191 14 8 1195 4160 196 106 15 chr5 80051419 80052404 -72484855 + Lx5 LINE L1 5966 7039 -11 8 1195 23 0 0 0 chr5 80053936 80053959 -72483300 + AT_rich Low_complexity Low_complexity 1 23 0 8 1195 55 29 0 0 chr5 80054707 80054776 -72482483 + AT_rich Low_complexity Low_complexity 1 69 0 8 1195 23 33 0 0 chr5 80054989 80055019 -72482240 + AT_rich Low_complexity Low_complexity 1 30 0 9 1195 222 160 0 0 chr5 80055053 80055103 -72482156 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1195 634 328 57 87 chr5 80055139 80055576 -72481683 - Lx9 LINE L1 -777 6867 6444 9 1195 21 36 0 0 chr5 80055977 80056005 -72481254 + AT_rich Low_complexity Low_complexity 1 28 0 9 1195 372 104 0 0 chr5 80056552 80056619 -72480640 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 9 1195 246 156 0 0 chr5 80056622 80056686 -72480573 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 9 1195 218 116 23 0 chr5 80056715 80056758 -72480501 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 9 1195 960 205 179 4 chr5 80057268 80057508 -72479751 - RMER6D LTR ERVK -159 561 280 9 1195 23 33 0 0 chr5 80057549 80057579 -72479680 + AT_rich Low_complexity Low_complexity 1 30 0 9 1195 29 70 0 0 chr5 80057672 80057729 -72479530 + AT_rich Low_complexity Low_complexity 1 57 0 9 1195 27 73 0 0 chr5 80057799 80057854 -72479405 + AT_rich Low_complexity Low_complexity 1 55 0 1 1195 352 270 5 33 chr5 80058092 80058267 -72478992 + L1M4 LINE L1 5705 5876 -295 1 1195 366 23 0 0 chr5 80058615 80058658 -72478601 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1195 303 28 0 0 chr5 80058807 80058843 -72478416 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1195 692 303 19 9 chr5 80058848 80059058 -72478201 + B3 SINE B2 1 212 -4 1 1195 215 281 0 30 chr5 80059937 80060003 -72477256 + (TATG)n Simple_repeat Simple_repeat 1 64 0 1 1195 259 291 157 34 chr5 80060145 80060323 -72476936 + LTR80A LTR ERVL 40 239 -344 1 1195 618 267 86 8 chr5 80060342 80060503 -72476756 + ORR1C2 LTR MaLR 162 339 -55 1 1195 414 0 0 0 chr5 80060503 80060549 -72476710 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1 1195 618 248 84 7 chr5 80060549 80060592 -72476667 + ORR1C2 LTR MaLR 330 372 -12 1 1195 345 364 29 5 chr5 80060755 80061102 -72476157 - L1M4 LINE L1 -560 5624 5269 1 1195 262 356 18 24 chr5 80061256 80061420 -72475839 - L1M4 LINE L1 -1085 5061 4899 1 1195 408 392 41 68 chr5 80061657 80062026 -72475233 - ORR1E LTR MaLR 0 359 1 1 1195 1123 355 85 2 chr5 80062026 80062437 -72474822 - ORR1E-int LTR MaLR -53 1527 1081 1 1195 2485 214 68 16 chr5 80062552 80063127 -72474132 - Lx4B LINE L1 -5 7053 6449 1 1195 901 318 109 45 chr5 80063190 80063983 -72473276 - ORR1E-int LTR MaLR -642 938 5 1 1195 385 211 0 13 chr5 80063989 80064066 -72473193 - ORR1E LTR MaLR -6 373 298 1 1195 366 307 77 24 chr5 80064271 80064441 -72472818 + B3 SINE B2 12 190 -26 1 1195 455 246 111 26 chr5 80064724 80064995 -72472264 + L1M3 LINE L1 2719 3012 -3128 1 1195 279 79 0 0 chr5 80065044 80065082 -72472177 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1195 26 30 0 0 chr5 80065389 80065422 -72471837 + AT_rich Low_complexity Low_complexity 1 33 0 1 1195 309 301 93 88 chr5 80065560 80065742 -72471517 + B3A SINE B2 1 183 -15 1 1195 321 236 136 16 chr5 80065817 80065942 -72471317 - L1_Mur3 LINE L1 -749 5131 4992 1 1195 2818 203 65 42 chr5 80065958 80066605 -72470654 - Lx5 LINE L1 -154 6896 6235 1 1195 681 305 32 19 chr5 80066625 80066939 -72470320 - L1_Rod LINE L1 -906 4941 4624 1 1195 25 31 0 0 chr5 80067062 80067094 -72470165 + AT_rich Low_complexity Low_complexity 1 32 0 1 1195 292 267 230 14 chr5 80067560 80067685 -72469574 - Lx9 LINE L1 0 7644 7478 1 1195 198 71 0 0 chr5 80067685 80067713 -72469546 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1195 292 267 230 14 chr5 80067713 80067800 -72469459 - Lx9 LINE L1 -167 7477 7386 1 1195 1236 345 106 41 chr5 80068187 80069209 -72468050 + Lx8 LINE L1 6246 7343 -130 1 1195 309 369 14 14 chr5 80069209 80069418 -72467841 + B3 SINE B2 4 212 -4 1 1195 1236 345 106 41 chr5 80069418 80069521 -72467738 + Lx8 LINE L1 7344 7444 -29 1 1195 924 140 11 27 chr5 80069713 80069896 -72467363 - Lx2 LINE L1 0 6997 6818 1 1195 1080 0 0 0 chr5 80069925 80070045 -72467214 + (TTCCC)n Simple_repeat Simple_repeat 2 121 0 1 1195 561 68 0 0 chr5 80070045 80070119 -72467140 + (TTTC)n Simple_repeat Simple_repeat 2 75 0 1 1195 399 342 0 14 chr5 80070942 80071090 -72466169 - MER67D LTR ERV1 -100 414 269 1 1195 521 199 0 8 chr5 80071136 80071268 -72465991 + CT-rich Low_complexity Low_complexity 2 132 0 1 1195 270 0 0 0 chr5 80071268 80071298 -72465961 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1195 250 379 32 16 chr5 80071392 80071518 -72465741 - ID_B1 SINE B4 -89 135 8 1 1195 28 29 0 0 chr5 80071933 80071968 -72465291 + AT_rich Low_complexity Low_complexity 1 35 0 1 1195 347 41 20 0 chr5 80072861 80072910 -72464349 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1195 558 323 66 53 chr5 80073368 80073669 -72463590 + MTE2a LTR MaLR 60 364 -15 1 1195 22 0 0 0 chr5 80073756 80073778 -72463481 + AT_rich Low_complexity Low_complexity 1 22 0 1 1195 21 71 0 0 chr5 80074233 80074275 -72462984 + AT_rich Low_complexity Low_complexity 1 42 0 1 1195 4272 158 26 9 chr5 80075381 80076137 -72461122 + Lx3C LINE L1 6206 6974 -2 1 1195 4326 145 36 39 chr5 80076370 80077182 -72460077 - RMER17D2 LTR ERVK 0 809 1 1 1195 309 315 28 51 chr5 80077477 80077654 -72459605 - RLTR25A LTR ERVK -930 173 1 1 1195 1170 61 0 0 chr5 80077861 80078008 -72459251 - B1_Mus2 SINE Alu 0 147 1 1 1195 2047 171 46 23 chr5 80078445 80078876 -72458383 + BGLII_B LTR ERVK 1 441 0 1 1195 669 407 11 0 chr5 80079914 80080194 -72457065 + B4A SINE B4 6 288 -4 1 1195 244 200 14 14 chr5 80080220 80080291 -72456968 + GA-rich Low_complexity Low_complexity 4 74 0 1 1195 296 321 18 12 chr5 80080306 80080470 -72456789 + (CATA)n Simple_repeat Simple_repeat 4 168 0 1 1195 28 0 0 0 chr5 80081580 80081608 -72455651 + AT_rich Low_complexity Low_complexity 1 28 0 1 1195 1893 289 164 12 chr5 80082930 80083972 -72453287 + RMER1A Other Other 1 1028 -2 1 1196 486 0 0 0 chr5 80085161 80085215 -72452044 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 1 1196 328 357 19 77 chr5 80085248 80085289 -72451970 + B4A SINE B4 44 75 -217 1 1196 250 312 23 132 chr5 80085289 80085418 -72451841 + PB1D7 SINE Alu 1 115 -5 1 1196 541 324 60 22 chr5 80085589 80085955 -72451304 - Lx9 LINE L1 -40 7604 7225 1 1196 573 297 128 59 chr5 80085968 80086326 -72450933 - Lx9 LINE L1 -468 7176 6794 1 1196 2969 88 47 2 chr5 80086320 80086743 -72450516 - Lx3_Mus LINE L1 -347 6662 6221 1 1196 2506 188 26 16 chr5 80086743 80087307 -72449952 + ORR1A3-int LTR MaLR 334 1190 -773 1 1196 420 20 0 0 chr5 80087307 80087356 -72449903 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1196 915 267 75 7 chr5 80087356 80087423 -72449836 + ORR1A3-int LTR MaLR 556 631 -627 1 1196 1069 268 35 83 chr5 80090298 80090569 -72446690 + Lx7 LINE L1 7040 7312 -384 1 1196 288 0 0 0 chr5 80090569 80090601 -72446658 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 1196 1072 68 7 7 chr5 80090610 80090757 -72446502 - B1_Mm SINE Alu 0 147 1 1 1196 1069 268 35 83 chr5 80090757 80090769 -72446490 + Lx7 LINE L1 7313 7313 -383 1 1196 1258 75 140 0 chr5 80090769 80090955 -72446304 - L1_Mus2 LINE L1 -1 6565 6354 1 1196 1069 268 35 83 chr5 80090955 80091055 -72446204 + Lx7 LINE L1 7313 7415 -281 1 1196 232 130 0 53 chr5 80091064 80091121 -72446138 + CT-rich Low_complexity Low_complexity 3 56 0 1 1196 180 0 0 0 chr5 80091561 80091581 -72445678 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1196 342 267 93 0 chr5 80091874 80091960 -72445299 - ID_B1 SINE B4 -32 192 99 1 1196 230 270 26 115 chr5 80091915 80092028 -72445231 + YREP_Mm Unknown Unknown 255 357 -1455 1 1196 1396 259 67 19 chr5 80092028 80092422 -72444837 - Lx5 LINE L1 -20 7030 6290 1 1196 286 156 61 30 chr5 80092743 80092842 -72444417 + Lx9 LINE L1 7543 7644 0 1 1196 517 208 11 0 chr5 80093265 80093443 -72443816 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1196 234 215 154 0 chr5 80093688 80093753 -72443506 - MTEb LTR MaLR -165 214 140 1 1196 319 383 31 6 chr5 80094112 80094275 -72442984 + MTEa LTR MaLR 10 176 -203 1 1196 916 318 52 25 chr5 80094419 80094861 -72442398 + MTE-int LTR MaLR 23 476 -1104 1 1196 287 262 25 12 chr5 80094903 80094984 -72442275 + MTE-int LTR MaLR 548 629 -951 1 1196 189 0 0 0 chr5 80096268 80096289 -72440970 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1 1196 954 113 68 125 chr5 80096299 80096451 -72440808 - B2_Mm2 SINE B2 -13 182 41 1 1196 2125 39 0 0 chr5 80096451 80096706 -72440553 - L1Md_F2 LINE L1 -15 6567 6313 1 1196 954 113 68 125 chr5 80096706 80096745 -72440514 - B2_Mm2 SINE B2 -155 40 2 1 1196 235 368 26 26 chr5 80096714 80096792 -72440467 - ZP3AR Satellite Satellite -87 125 48 1 1196 351 0 0 0 chr5 80097526 80097565 -72439694 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1196 23 68 0 0 chr5 80098114 80098158 -72439101 + AT_rich Low_complexity Low_complexity 1 44 0 1 1196 624 314 47 17 chr5 80098212 80098445 -72438814 + Lx6 LINE L1 7217 7456 -4 1 1196 21 36 0 0 chr5 80098538 80098566 -72438693 + AT_rich Low_complexity Low_complexity 1 28 0 1 1196 183 42 0 0 chr5 80098642 80098666 -72438593 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1196 3340 275 79 8 chr5 80098672 80099783 -72437476 - Lx9 LINE L1 -108 7536 6347 1 1196 283 221 35 63 chr5 80100397 80100571 -72436688 + (TCTA)n Simple_repeat Simple_repeat 2 170 0 1 1196 1434 219 10 38 chr5 80100610 80100923 -72436336 - Lx5 LINE L1 -289 6761 6458 1 1196 939 258 60 11 chr5 80100911 80101193 -72436066 + Lx4B LINE L1 6759 7054 -4 1 1196 387 17 50 0 chr5 80101262 80101322 -72435937 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 1 1196 1145 36 0 0 chr5 80101322 80101459 -72435800 - B1_Mm SINE Alu -9 138 2 1 1196 382 276 29 0 chr5 80101575 80101680 -72435579 + PB1D10 SINE Alu 2 109 -8 1 1196 234 0 0 0 chr5 80102296 80102322 -72434937 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1196 522 0 0 0 chr5 80102322 80102379 -72434880 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1196 1151 56 0 0 chr5 80102856 80102998 -72434261 - B1_Mus2 SINE Alu -5 142 1 1 1196 290 219 31 43 chr5 80103629 80103791 -72433468 + (TATATG)n Simple_repeat Simple_repeat 6 165 0 1 1196 349 278 12 0 chr5 80103765 80103938 -72433321 + (TA)n Simple_repeat Simple_repeat 1 175 0 1 1196 385 214 11 45 chr5 80103967 80104143 -72433116 + (CATATA)n Simple_repeat Simple_repeat 5 174 0 1 1196 253 280 0 20 chr5 80104190 80104343 -72432916 + (CATATA)n Simple_repeat Simple_repeat 4 153 0 1 1196 260 212 0 24 chr5 80104323 80104405 -72432854 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 1 1196 484 73 52 52 chr5 80104438 80104553 -72432706 + (CATATA)n Simple_repeat Simple_repeat 3 117 0 1 1196 5017 130 24 7 chr5 80104716 80105543 -72431716 - Lx3A LINE L1 -2 6979 6139 1 1196 4818 161 10 13 chr5 80106148 80107023 -72430236 - Lx2 LINE L1 -187 6810 5938 1 1196 3237 77 9 0 chr5 80107125 80107675 -72429584 + L1_Mus2 LINE L1 5460 6014 -552 1 1196 1937 110 33 3 chr5 80107675 80107977 -72429282 + L1_Mus2 LINE L1 6255 6565 -1 1 1196 1119 65 0 0 chr5 80107984 80108137 -72429122 + (GA)n Simple_repeat Simple_repeat 1 153 0 1 1196 2378 94 122 5 chr5 80108148 80108524 -72428735 + RLTR9B2 LTR ERVK 1 420 0 1 1196 3048 88 2 9 chr5 80109613 80110037 -72427222 - BGLII LTR ERVK 0 421 1 1 1196 218 412 55 24 chr5 80111290 80111454 -72425805 - B4A SINE B4 -123 169 1 1 1196 26 50 0 0 chr5 80111543 80111583 -72425676 + AT_rich Low_complexity Low_complexity 1 40 0 1 1196 929 86 14 7 chr5 80111583 80111724 -72425535 - L1_Mus1 LINE L1 0 6567 6426 2 1196 204 67 0 0 chr5 80111735 80111765 -72425494 + (TTTTTA)n Simple_repeat Simple_repeat 6 35 0 2 1196 1030 97 0 14 chr5 80111773 80111919 -72425340 - B1_Mus1 SINE Alu 0 148 5 2 1196 334 275 167 56 chr5 80112558 80112774 -72424485 - MTD LTR MaLR -14 405 166 2 1196 1870 272 80 13 chr5 80112777 80112899 -72424360 - Lx6 LINE L1 -146 7314 7186 2 1196 576 0 0 0 chr5 80112899 80112963 -72424296 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 2 1196 1870 272 80 13 chr5 80112963 80113368 -72423891 - Lx6 LINE L1 -275 7185 6752 2 1196 727 339 39 27 chr5 80113366 80113697 -72423562 + Lx6 LINE L1 6395 6729 -731 2 1196 23 0 0 0 chr5 80114175 80114198 -72423061 + AT_rich Low_complexity Low_complexity 1 23 0 2 1196 1248 76 0 39 chr5 80115831 80116010 -72421249 + L1_Mus1 LINE L1 6395 6566 -1 2 1196 440 345 29 0 chr5 80116241 80116380 -72420879 + RSINE1 SINE B4 8 150 -15 2 1196 3791 124 87 2 chr5 80117338 80117946 -72419313 - Lx3B LINE L1 -5 6968 6309 2 1196 3483 142 74 24 chr5 80117946 80118895 -72418364 + Lx3B LINE L1 5318 6309 -664 2 1196 252 0 0 0 chr5 80119207 80119235 -72418024 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 1196 529 273 35 14 chr5 80119420 80119561 -72417698 + B1_Mur1 SINE Alu 6 149 0 2 1196 258 205 20 102 chr5 80119637 80119735 -72417524 + MLT1A1 LTR MaLR 307 396 -12 2 1196 226 342 122 42 chr5 80120430 80120741 -72416518 + L2 LINE L2 2727 3062 -357 2 1196 644 164 8 8 chr5 80120880 80121009 -72416250 - Lx LINE L1 -1 6653 6525 2 1196 1813 236 12 42 chr5 80121114 80121538 -72415721 - MTD LTR MaLR -8 411 1 2 1196 6989 73 16 2 chr5 80121755 80122687 -72414572 + L1_Mus2 LINE L1 5619 6563 -3 2 1196 2983 83 2 5 chr5 80122873 80123270 -72413989 + MTA_Mm LTR MaLR 1 396 0 2 1196 35 54 0 0 chr5 80123314 80123370 -72413889 + AT_rich Low_complexity Low_complexity 1 56 0 2 1196 1129 51 32 0 chr5 80123644 80123802 -72413457 - L1Md_F3 LINE L1 0 6584 6422 2 1196 540 45 0 0 chr5 80124284 80124351 -72412908 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1196 750 333 11 13 chr5 80124351 80124725 -72412534 + Lx7 LINE L1 4895 5267 -613 2 1196 857 291 45 13 chr5 80125062 80125488 -72411771 + Lx7 LINE L1 5488 5927 -1769 2 1196 279 0 0 0 chr5 80127130 80127161 -72410098 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1196 2021 205 74 74 chr5 80127357 80127922 -72409337 + L1_Mur3 LINE L1 300 864 -6864 2 1196 1132 251 127 42 chr5 80127922 80128156 -72409103 - RMER6B LTR ERVK -1 460 225 2 1196 5028 32 2 5 chr5 80128156 80128754 -72408505 - L1Md_F2 LINE L1 0 6582 5987 2 1196 1132 251 127 42 chr5 80128754 80128943 -72408316 - RMER6B LTR ERVK -237 224 2 2 1196 1794 192 249 5 chr5 80128943 80129314 -72407945 + L1_Mur3 LINE L1 857 1317 -6411 2 1196 1390 175 26 11 chr5 80129314 80129580 -72407679 + Lx2A1 LINE L1 6736 7005 -3 2 1196 1794 220 43 43 chr5 80129580 80129886 -72407373 + L1_Mur3 LINE L1 1311 1611 -4269 2 1196 315 0 0 0 chr5 80129886 80129921 -72407338 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1196 1794 220 43 43 chr5 80129921 80130132 -72407127 + L1_Mur3 LINE L1 1612 1832 -4048 2 1196 30 0 0 0 chr5 80130284 80130314 -72406945 + AT_rich Low_complexity Low_complexity 1 30 0 2 1196 37 23 0 0 chr5 80130373 80130417 -72406842 + AT_rich Low_complexity Low_complexity 1 44 0 2 1196 320 282 52 37 chr5 80131124 80131155 -72406104 - Lx6 LINE L1 -15 7445 7418 2 1196 597 28 0 0 chr5 80131155 80131226 -72406033 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1196 320 282 52 37 chr5 80131226 80131330 -72405929 - Lx6 LINE L1 -43 7417 7308 2 1196 485 83 0 0 chr5 80131337 80131408 -72405851 + Lx4B LINE L1 4686 4765 -1121 2 1196 231 61 0 0 chr5 80131410 80131443 -72405816 + Lx7 LINE L1 5834 5866 -1830 2 1196 7108 164 17 24 chr5 80131451 80133008 -72404251 + Lx4B LINE L1 5330 6894 -164 2 1196 2212 336 52 20 chr5 80133005 80134034 -72403225 + Lx8 LINE L1 6250 7310 -163 2 1196 1369 135 125 30 chr5 80134525 80134830 -72402429 + RLTR9E LTR ERVK 76 409 0 2 1196 215 180 33 0 chr5 80135160 80135221 -72402038 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 2 1196 21 0 0 0 chr5 80135991 80136012 -72401247 + AT_rich Low_complexity Low_complexity 1 21 0 2 1196 335 198 67 36 chr5 80136725 80136761 -72400498 + ORR1B1 LTR MaLR 309 369 -52 2 1196 4206 137 55 16 chr5 80136761 80137392 -72399867 + Lx3A LINE L1 6213 6857 -124 2 1196 180 0 0 0 chr5 80137392 80137412 -72399847 + (TGGGGG)n Simple_repeat Simple_repeat 4 23 0 2 1196 4206 137 55 16 chr5 80137412 80137514 -72399745 + Lx3A LINE L1 6858 6973 -8 2 1196 392 60 0 0 chr5 80137514 80137564 -72399695 + ORR1B1 LTR MaLR 344 393 -1 2 1196 180 0 0 0 chr5 80137610 80137630 -72399629 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1196 492 222 32 7 chr5 80137761 80137915 -72399344 - Lx9 LINE L1 0 7644 7487 2 1196 222 240 0 0 chr5 80137919 80137969 -72399290 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1196 282 319 75 0 chr5 80137983 80138077 -72399182 - RSINE1 SINE B4 -12 153 53 2 1196 24 32 0 0 chr5 80138369 80138400 -72398859 + AT_rich Low_complexity Low_complexity 1 31 0 2 1196 242 331 87 24 chr5 80139793 80139920 -72397339 - MER58A DNA MER1_type -89 135 1 2 1196 5834 218 93 9 chr5 80140653 80142177 -72395082 - Lx5 LINE L1 -1 7049 5299 2 1196 195 69 0 0 chr5 80142228 80142257 -72395002 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 1196 24 77 0 0 chr5 80142267 80142319 -72394940 + AT_rich Low_complexity Low_complexity 1 52 0 2 1196 7140 69 10 3 chr5 80143198 80144154 -72393105 - L1Md_F2 LINE L1 -2 6580 5649 2 1196 552 309 101 57 chr5 80144229 80144634 -72392625 - RLTR23 LTR ERV1 0 430 8 2 1196 1067 97 0 27 chr5 80144899 80145048 -72392211 - B1_Mus2 SINE Alu -2 145 1 2 1196 1217 284 61 76 chr5 80145418 80145971 -72391288 - Lx7 LINE L1 0 7696 7159 2 1196 342 0 0 0 chr5 80145971 80146009 -72391250 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1196 1217 284 61 76 chr5 80146009 80146049 -72391210 - Lx7 LINE L1 -538 7158 7113 2 1196 1090 239 73 28 chr5 80146055 80146089 -72391170 + L1_Mur3 LINE L1 3039 3071 -2809 2 1196 1144 257 112 87 chr5 80146089 80146686 -72390573 - RLTR18 LTR ERVK -4 612 1 2 1196 1090 239 73 28 chr5 80146686 80147077 -72390182 + L1_Mur3 LINE L1 3072 3483 -2397 2 1196 337 289 43 17 chr5 80147386 80147502 -72389757 + ORR1E LTR MaLR 241 359 0 2 1196 313 231 40 57 chr5 80147711 80147835 -72389424 + Lx9 LINE L1 7516 7637 -7 2 1196 447 318 63 54 chr5 80148190 80148615 -72388644 - L1MB3 LINE L1 -172 6011 5583 2 1196 371 356 130 5 chr5 80148646 80148838 -72388421 + RCHARR1 DNA MER1_type 3 218 -756 2 1196 782 277 53 106 chr5 80148876 80149312 -72387947 + RLTR12B LTR ERVK 74 486 -42 2 1196 198 0 0 0 chr5 80149404 80149426 -72387833 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1196 243 0 0 0 chr5 80149426 80149453 -72387806 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1196 6797 113 34 1 chr5 80149456 80149575 -72387684 - Lx LINE L1 -1 6653 6536 2 1196 183 80 0 0 chr5 80149575 80149600 -72387659 + (CCCA)n Simple_repeat Simple_repeat 1 25 0 2 1196 6797 117 33 1 chr5 80149600 80150566 -72386693 - Lx LINE L1 -119 6535 5534 2 1196 301 376 35 29 chr5 80151245 80151415 -72385844 + Lx8 LINE L1 7116 7286 -187 2 1196 1018 365 26 31 chr5 80151469 80152072 -72385187 - Lx8 LINE L1 -118 7355 6756 2 1196 593 150 18 0 chr5 80152494 80152607 -72384652 + GA-rich Low_complexity Low_complexity 2 116 0 2 1196 450 0 0 0 chr5 80152982 80153032 -72384227 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1196 21 36 0 0 chr5 80153618 80153646 -72383613 + AT_rich Low_complexity Low_complexity 1 28 0 2 1196 201 133 0 0 chr5 80154877 80154907 -72382352 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1196 533 322 29 29 chr5 80155253 80155458 -72381801 + B3 SINE B2 5 209 -7 2 1196 237 132 0 0 chr5 80155463 80155501 -72381758 + (CAT)n Simple_repeat Simple_repeat 2 39 0 2 1196 195 42 0 0 chr5 80155712 80155736 -72381523 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1196 19004 23 0 0 chr5 80155753 80158650 -72378609 - L1Md_T LINE L1 0 6582 3686 2 1196 305 218 0 25 chr5 80158767 80158847 -72378412 + RMER12 LTR ERVK 712 789 -615 2 1196 392 291 25 121 chr5 80158844 80159125 -72378134 + RLTR22_Mur LTR ERVK 549 802 -1046 2 1196 813 159 6 17 chr5 80159216 80159395 -72377864 + C-rich Low_complexity Low_complexity 1 177 0 2 1196 205 161 0 0 chr5 80159396 80159427 -72377832 + polypyrimidine Low_complexity Low_complexity 5 35 0 2 1196 689 277 52 48 chr5 80159427 80159685 -72377574 + RMER12 LTR ERVK 994 1304 -18 2 1196 24 53 0 0 chr5 80159852 80159890 -72377369 + AT_rich Low_complexity Low_complexity 1 38 0 2 1196 1220 271 37 6 chr5 80160381 80160708 -72376551 + Lx6 LINE L1 7120 7456 -4 2 1196 1096 74 0 26 chr5 80161327 80161479 -72375780 - B1_Mus1 SINE Alu 0 148 1 2 1196 656 284 15 25 chr5 80161479 80161678 -72375581 - Lx9 LINE L1 -447 7197 7001 2 1196 482 292 16 31 chr5 80161767 80161961 -72375298 + Lx6 LINE L1 7082 7272 -188 2 1196 363 154 0 0 chr5 80161972 80162037 -72375222 + (TA)n Simple_repeat Simple_repeat 1 65 0 2 1196 252 0 0 0 chr5 80162052 80162080 -72375179 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1196 623 228 38 6 chr5 80162189 80162348 -72374911 - Lx9 LINE L1 -682 6962 6799 2 1196 278 194 15 0 chr5 80162508 80162575 -72374684 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 2 1196 298 61 20 20 chr5 80162593 80162643 -72374616 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1196 441 0 0 0 chr5 80162643 80162692 -72374567 + (TA)n Simple_repeat Simple_repeat 2 50 0 2 1196 281 273 44 22 chr5 80162741 80162831 -72374428 + Lx9 LINE L1 6380 6471 -1173 2 1196 21 0 0 0 chr5 80163700 80163721 -72373538 + AT_rich Low_complexity Low_complexity 1 21 0 2 1196 1330 50 6 6 chr5 80164270 80164450 -72372809 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1196 199 203 34 0 chr5 80164452 80164511 -72372748 + CT-rich Low_complexity Low_complexity 4 64 0 2 1196 1049 110 6 0 chr5 80164511 80164674 -72372585 + (TC)n Simple_repeat Simple_repeat 1 164 0 2 1196 1547 70 0 5 chr5 80164975 80165190 -72372069 - L1Md_F2 LINE L1 -2 6580 6367 2 1196 41113 5 0 0 chr5 80165723 80172089 -72365170 - L1Md_A LINE L1 0 6582 215 2 1196 339 25 0 0 chr5 80172261 80172301 -72364958 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 1196 387 0 0 0 chr5 80172326 80172369 -72364890 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1196 621 361 23 27 chr5 80172372 80172631 -72364628 - B4 SINE B4 -28 264 7 2 1196 546 260 32 0 chr5 80173161 80173284 -72363975 - B3 SINE B2 -75 141 15 3 1196 24 32 0 0 chr5 80173448 80173479 -72363780 + AT_rich Low_complexity Low_complexity 1 31 0 3 1196 506 307 37 53 chr5 80173632 80173821 -72363438 + B3 SINE B2 1 186 -30 3 1196 227 349 113 65 chr5 80174131 80174379 -72362880 - L2 LINE L2 -505 2914 2655 3 1196 580 351 25 90 chr5 80174414 80174561 -72362698 + MTE2a LTR MaLR 1 145 -234 3 1196 4956 115 126 2 chr5 80174561 80175372 -72361887 - Lx3A LINE L1 -1 6980 6070 3 1196 580 351 25 90 chr5 80175372 80175434 -72361825 + MTE2a LTR MaLR 146 186 -193 3 1196 558 43 0 0 chr5 80175434 80175503 -72361756 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1196 580 351 25 90 chr5 80175503 80175658 -72361601 + MTE2a LTR MaLR 187 341 -38 3 1196 8814 137 11 15 chr5 80175693 80177788 -72359471 + L1VL4 LINE L1 134 2221 -1338 3 1196 21 0 0 0 chr5 80177849 80177870 -72359389 + AT_rich Low_complexity Low_complexity 1 21 0 3 1196 307 183 183 0 chr5 80178159 80178230 -72359029 - Lx2B LINE L1 -221 6779 6696 3 1196 315 274 19 19 chr5 80178220 80178324 -72358935 - Lx2B LINE L1 -779 6221 6118 3 1196 803 190 7 0 chr5 80179412 80179554 -72357705 - U4 snRNA snRNA -2 143 1 3 1196 21 57 0 0 chr5 80179774 80179809 -72357450 + AT_rich Low_complexity Low_complexity 1 35 0 3 1196 477 0 0 0 chr5 80179959 80180012 -72357247 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1196 3080 26 32 0 chr5 80180013 80180391 -72356868 - MTA_Mm LTR MaLR -6 390 1 3 1196 474 49 0 0 chr5 80180391 80180452 -72356807 + (TA)n Simple_repeat Simple_repeat 1 61 0 3 1196 1199 265 31 52 chr5 80180656 80181101 -72356158 + Lx9 LINE L1 7040 7475 -169 3 1196 586 47 0 23 chr5 80181145 80181233 -72356026 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 3 1196 294 29 0 0 chr5 80181237 80181272 -72355987 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 3 1196 466 98 0 11 chr5 80181367 80181441 -72355818 + Lx LINE L1 5583 5657 -997 3 1196 1078 84 0 0 chr5 80181441 80181596 -72355663 + L1_Mus1 LINE L1 6413 6567 0 3 1196 28 0 0 0 chr5 80181618 80181646 -72355613 + AT_rich Low_complexity Low_complexity 1 28 0 3 1196 3508 122 123 2 chr5 80181646 80182229 -72355030 + Lx LINE L1 5998 6651 -3 3 1196 191 144 61 10 chr5 80182281 80182379 -72354880 + (TA)n Simple_repeat Simple_repeat 2 104 0 3 1196 413 19 19 0 chr5 80182426 80182480 -72354779 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 3 1196 193 75 24 24 chr5 80182487 80182528 -72354731 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 3 1196 249 43 64 0 chr5 80182542 80182589 -72354670 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1196 184 210 12 12 chr5 80182672 80182754 -72354505 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1196 297 0 0 0 chr5 80182831 80182864 -72354395 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1196 432 55 0 0 chr5 80182865 80182920 -72354339 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1196 414 0 0 0 chr5 80184939 80184985 -72352274 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1196 213 39 0 0 chr5 80185189 80185215 -72352044 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 3 1196 327 336 0 82 chr5 80186074 80186220 -72351039 - BGLII_B LTR ERVK -21 420 287 3 1196 429 267 148 48 chr5 80186342 80186531 -72350728 + MTEb LTR MaLR 172 379 0 3 1196 6193 140 39 4 chr5 80188170 80189224 -72348035 - Lx3B LINE L1 -3 6970 5880 3 1196 2290 141 36 0 chr5 80189225 80189696 -72347563 + L1_Mur1 LINE L1 4988 5525 -361 3 1196 1002 207 14 178 chr5 80189696 80190060 -72347199 - RMER19B LTR ERVK -273 338 3 3 1196 22 35 0 0 chr5 80190270 80190299 -72346960 + AT_rich Low_complexity Low_complexity 1 29 0 3 1196 21 0 0 0 chr5 80192293 80192314 -72344945 + AT_rich Low_complexity Low_complexity 1 21 0 3 1196 307 332 118 89 chr5 80192513 80192817 -72344442 - MTEa LTR MaLR -47 332 20 3 1196 1590 257 154 11 chr5 80192892 80193419 -72343840 + Lx7 LINE L1 6852 7453 -243 3 1196 390 42 0 0 chr5 80193460 80193508 -72343751 + (TTA)n Simple_repeat Simple_repeat 2 49 0 3 1196 385 267 22 22 chr5 80193509 80193643 -72343616 + Lx7 LINE L1 7561 7694 -2 3 1196 461 272 110 52 chr5 80193784 80194129 -72343130 + L1MC2 LINE L1 5880 6244 -100 3 1196 26 0 0 0 chr5 80194412 80194438 -72342821 + AT_rich Low_complexity Low_complexity 1 26 0 3 1196 24 0 0 0 chr5 80194562 80194586 -72342673 + AT_rich Low_complexity Low_complexity 1 24 0 3 1196 745 211 133 10 chr5 80194864 80195060 -72342199 - RMER6D LTR ERVK 0 720 501 3 1196 21 0 0 0 chr5 80195371 80195392 -72341867 + AT_rich Low_complexity Low_complexity 1 21 0 3 1196 534 330 62 0 chr5 80196663 80196842 -72340417 + ORR1E LTR MaLR 1 190 -169 3 1196 830 234 16 11 chr5 80196833 80197019 -72340240 - B3 SINE B2 -28 188 2 3 1196 438 20 0 0 chr5 80197448 80197499 -72339760 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 3 1196 1823 234 105 39 chr5 80199693 80200253 -72337006 - RMER20B LTR ERVK -21 606 10 3 1196 532 271 42 52 chr5 80200874 80201065 -72336194 - MTE2a LTR MaLR -18 361 173 3 1196 297 0 0 0 chr5 80201368 80201401 -72335858 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 3 1196 6861 188 18 8 chr5 80201509 80203681 -72333578 - Lx3C LINE L1 -2 6974 4777 3 1196 301 375 68 89 chr5 80204289 80204570 -72332689 + B4 SINE B4 18 292 0 3 1196 3413 180 21 5 chr5 80204892 80205517 -72331742 - Lx LINE L1 -11 6643 6009 3 1196 2157 194 30 19 chr5 80206512 80206975 -72330284 - Lx4B LINE L1 0 7058 6591 3 1196 3115 99 34 6 chr5 80206973 80207231 -72330028 + L1_Mus3 LINE L1 6149 6407 -231 3 1196 189 0 0 0 chr5 80207231 80207252 -72330007 + (TA)n Simple_repeat Simple_repeat 2 22 0 3 1196 3115 99 34 6 chr5 80207252 80207470 -72329789 + L1_Mus3 LINE L1 6408 6637 -1 3 1196 1837 155 88 11 chr5 80207493 80207845 -72329414 - Lx4B LINE L1 -451 6607 6229 3 1196 436 223 33 0 chr5 80207849 80207970 -72329289 + Lx4B LINE L1 6090 6214 -844 3 1196 774 203 0 0 chr5 80207977 80208110 -72329149 - B1_Mur4 SINE Alu -9 141 9 3 1196 332 371 26 65 chr5 80209021 80209174 -72328085 - RSINE1 SINE B4 0 165 19 3 1196 455 313 151 5 chr5 80209369 80209568 -72327691 + Lx8 LINE L1 7090 7317 -156 3 1196 23 0 0 0 chr5 80209636 80209659 -72327600 + AT_rich Low_complexity Low_complexity 1 23 0 3 1196 938 206 89 66 chr5 80210310 80210743 -72326516 - RMER19B LTR ERVK 0 902 317 3 1196 644 12 12 0 chr5 80210893 80210978 -72326281 - L1Md_T LINE L1 -2 6580 6495 3 1196 282 29 0 0 chr5 80211685 80211720 -72325539 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1196 228 220 119 10 chr5 80211859 80211960 -72325299 - Lx9 LINE L1 -39 7605 7494 3 1196 1853 152 52 9 chr5 80211988 80212314 -72324945 - Lx4A LINE L1 -3 7055 6716 3 1196 207 0 0 0 chr5 80212470 80212493 -72324766 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 1196 261 0 0 0 chr5 80212981 80213010 -72324249 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1196 450 0 0 0 chr5 80214399 80214449 -72322810 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 3 1196 534 109 0 0 chr5 80214789 80214881 -72322378 + (CA)n Simple_repeat Simple_repeat 1 92 0 3 1196 2313 122 16 6 chr5 80215040 80215404 -72321855 + RLTR9A LTR ERVK 1 368 0 3 1197 31 26 0 0 chr5 80216988 80217026 -72320233 + AT_rich Low_complexity Low_complexity 1 38 0 3 1197 433 259 84 0 chr5 80217138 80217161 -72320098 + Lx4B LINE L1 4831 4853 -1024 3 1197 1248 62 0 0 chr5 80217161 80217323 -72319936 + (GAAA)n Simple_repeat Simple_repeat 2 163 0 3 1197 456 254 103 0 chr5 80217323 80217449 -72319810 + Lx4B LINE L1 4875 5013 -873 3 1197 2587 97 19 0 chr5 80217451 80217821 -72319438 + MTB LTR MaLR 3 379 -21 3 1197 3738 195 23 89 chr5 80217850 80218363 -72318896 + Lx4B LINE L1 5000 5446 -431 3 1197 390 21 0 0 chr5 80218363 80218410 -72318849 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1197 5108 222 30 34 chr5 80218410 80219904 -72317355 + Lx4B LINE L1 5447 6999 -1 3 1197 2106 127 32 0 chr5 80221304 80221642 -72315617 - Lx2 LINE L1 -1 6996 6648 3 1197 309 321 0 22 chr5 80222676 80222810 -72314449 + GA-rich Low_complexity Low_complexity 4 134 0 3 1197 29 28 0 0 chr5 80223818 80223854 -72313405 + AT_rich Low_complexity Low_complexity 1 36 0 3 1197 322 314 41 16 chr5 80224032 80224155 -72313104 - RLTR25B LTR ERVK -4 1099 974 3 1197 1656 223 176 61 chr5 80224140 80224857 -72312402 - RLTR25B LTR ERVK -224 804 6 3 1197 6935 148 22 12 chr5 80224943 80225312 -72311947 + Lx LINE L1 5296 5677 -206 3 1197 5649 78 1 13 chr5 80225312 80226083 -72311176 - L1Md_F2 LINE L1 -7 6575 5814 3 1197 6935 122 11 8 chr5 80226083 80226213 -72311046 + Lx LINE L1 5678 5805 -849 3 1197 1297 109 0 10 chr5 80226213 80226408 -72310851 + B2_Mm2 SINE B2 2 194 -1 3 1197 6935 122 11 8 chr5 80226408 80227247 -72310012 + Lx LINE L1 5806 6651 -3 3 1197 21 100 0 0 chr5 80227466 80227536 -72309723 + AT_rich Low_complexity Low_complexity 1 70 0 3 1197 2095 196 84 64 chr5 80228224 80228267 -72308992 - RLTR20B3 LTR ERVK -54 523 481 3 1197 477 0 0 0 chr5 80228267 80228320 -72308939 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1197 396 0 0 0 chr5 80228320 80228363 -72308896 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1197 2095 196 84 64 chr5 80228363 80228831 -72308428 - RLTR20B3 LTR ERVK -97 480 2 3 1197 288 0 0 0 chr5 80229570 80229602 -72307657 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1197 377 81 0 16 chr5 80229893 80229956 -72307303 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1197 240 289 39 26 chr5 80230157 80230235 -72307024 + B4 SINE B4 6 84 -208 3 1197 374 291 38 16 chr5 80230505 80230690 -72306569 - L1MC4a LINE L1 -1318 6564 6376 3 1197 357 217 24 0 chr5 80232553 80232636 -72304623 + MTD LTR MaLR 1 85 -334 3 1197 1246 292 92 84 chr5 80232647 80233313 -72303946 + MTD-int LTR MaLR 586 1256 -2 3 1197 1023 272 21 14 chr5 80233313 80233589 -72303670 + MTD LTR MaLR 18 295 -124 3 1197 14563 21 0 0 chr5 80233625 80235315 -72301944 - L1Md_T LINE L1 0 5883 4194 3 1197 5571 69 0 0 chr5 80235315 80236028 -72301231 + L1Md_T LINE L1 5870 6582 0 3 1197 27 29 0 0 chr5 80236134 80236168 -72301091 + AT_rich Low_complexity Low_complexity 1 34 0 3 1197 240 175 53 0 chr5 80236751 80236808 -72300451 + Lx7 LINE L1 7635 7694 -2 3 1197 9233 136 29 60 chr5 80236810 80237818 -72299441 + RLTR22_Mur LTR ERVK 200 1158 -690 3 1197 314 74 19 0 chr5 80237818 80237872 -72299387 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 3 1197 9233 136 29 60 chr5 80237872 80238565 -72298694 + RLTR22_Mur LTR ERVK 1159 1848 0 3 1197 22 56 0 0 chr5 80238782 80238818 -72298441 + AT_rich Low_complexity Low_complexity 1 36 0 3 1197 219 298 14 41 chr5 80238852 80238999 -72298260 + (CATATA)n Simple_repeat Simple_repeat 5 147 0 3 1197 283 182 136 0 chr5 80239044 80239110 -72298149 - RLTR6_Mm LTR ERV1 -70 584 510 4 1197 2306 184 26 78 chr5 80239084 80239625 -72297634 - RLTR5_Mm LTR ERV1 -115 513 1 4 1197 21698 196 18 17 chr5 80239625 80244994 -72292265 - MURVY-int LTR ERV1 0 7778 2229 4 1197 21 0 0 0 chr5 80244995 80245016 -72292243 + AT_rich Low_complexity Low_complexity 1 21 0 4 1197 37545 38 1 0 chr5 80245038 80246323 -72290936 - L1Md_T LINE L1 -3 6582 5297 4 1197 5482 10 0 0 chr5 80246323 80246940 -72290319 - L1Md_A LINE L1 0 6582 5966 4 1197 37545 46 1 4 chr5 80246940 80251938 -72285321 - L1Md_T LINE L1 -590 5296 220 4 1197 920 164 0 0 chr5 80251940 80252092 -72285167 - MURVY-int LTR ERV1 -5217 2235 2084 4 1197 4202 160 1 11 chr5 80252090 80252824 -72284435 - MURVY-int LTR ERV1 -6725 727 1 4 1197 2818 169 57 66 chr5 80252824 80253458 -72283801 - RLTR5_Mm LTR ERV1 0 628 1 4 1197 3665 78 19 19 chr5 80253933 80254455 -72282804 - L1_Mus1 LINE L1 -1 6566 6045 4 1197 483 212 60 33 chr5 80255381 80255532 -72281727 - Lx7 LINE L1 0 7696 7542 4 1197 587 248 97 81 chr5 80255533 80255792 -72281467 - RLTR9A LTR ERVK 0 368 106 4 1197 963 274 73 147 chr5 80255840 80256528 -72280731 - Lx7 LINE L1 -166 7530 6894 4 1197 21 0 0 0 chr5 80256852 80256873 -72280386 + AT_rich Low_complexity Low_complexity 1 21 0 4 1197 486 49 0 0 chr5 80257766 80257827 -72279432 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1197 2472 114 44 22 chr5 80258048 80258459 -72278800 + Lx3A LINE L1 5820 6239 -742 4 1197 1168 68 0 6 chr5 80258754 80258917 -72278342 - L1Md_F2 LINE L1 -14 6568 6407 4 1197 716 229 62 36 chr5 80258918 80259113 -72278146 + LTRIS4 LTR ERV1 308 507 0 4 1197 4633 129 11 11 chr5 80259113 80259847 -72277412 + Lx3A LINE L1 6235 6968 -13 4 1197 387 0 0 0 chr5 80259847 80259890 -72277369 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 1197 722 11 11 0 chr5 80259894 80259981 -72277278 + (GAAA)n Simple_repeat Simple_repeat 3 90 0 4 1197 307 375 42 17 chr5 80260018 80260254 -72277005 + ERVL-int LTR ERVL 4112 4353 -1404 4 1197 641 133 19 0 chr5 80260263 80260368 -72276891 + Lx3A LINE L1 6714 6820 -161 4 1197 597 182 0 0 chr5 80260385 80260484 -72276775 - Lx5 LINE L1 -1310 5740 5642 4 1197 941 183 9 9 chr5 80260500 80260710 -72276549 - Lx5 LINE L1 -416 5461 5252 4 1197 183 129 0 0 chr5 80260710 80260741 -72276518 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1197 3811 48 0 4 chr5 80263013 80263489 -72273770 - L1Md_F2 LINE L1 -12 6570 6097 4 1197 425 38 0 0 chr5 80263489 80263542 -72273717 + L1Md_F2 LINE L1 6000 6052 -530 4 1197 705 132 0 0 chr5 80263707 80263828 -72273431 + (TC)n Simple_repeat Simple_repeat 2 122 0 4 1197 579 53 0 0 chr5 80263830 80263905 -72273354 + (CA)n Simple_repeat Simple_repeat 1 75 0 4 1197 1611 311 40 36 chr5 80264746 80265025 -72272234 - Lx9 LINE L1 -561 7083 6814 4 1197 2378 68 64 3 chr5 80265025 80265351 -72271908 + ORR1A1 LTR MaLR 1 346 0 4 1197 1611 311 40 36 chr5 80265351 80265792 -72271467 - Lx9 LINE L1 -831 6813 6360 4 1197 1106 150 22 35 chr5 80265976 80266204 -72271055 - Lx LINE L1 -5 6649 6425 4 1197 1963 136 33 18 chr5 80266206 80266536 -72270723 + Lx LINE L1 5790 6124 -530 4 1197 493 121 112 75 chr5 80266534 80266641 -72270618 + Lx2 LINE L1 6661 6771 -226 4 1197 960 302 37 28 chr5 80266643 80267163 -72270096 - Lx9 LINE L1 -1677 5967 5410 4 1197 589 267 107 130 chr5 80267178 80267664 -72269595 - RLTR12B LTR ERVK -7 521 47 4 1197 492 239 0 56 chr5 80267684 80267826 -72269433 - Lx9 LINE L1 -440 5407 5274 4 1197 244 148 16 16 chr5 80267829 80267891 -72269368 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1197 237 199 49 14 chr5 80267999 80268142 -72269117 + (TA)n Simple_repeat Simple_repeat 1 148 0 4 1197 744 267 63 51 chr5 80268161 80268512 -72268747 - Lx9 LINE L1 -606 5241 4887 4 1197 396 0 0 0 chr5 80269704 80269748 -72267511 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1197 28 29 0 0 chr5 80269825 80269860 -72267399 + AT_rich Low_complexity Low_complexity 1 35 0 4 1197 217 281 0 15 chr5 80270450 80270515 -72266744 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1197 7877 52 2 0 chr5 80271048 80272647 -72264612 - L1Md_F2 LINE L1 0 6582 4980 4 1197 189 0 0 0 chr5 80273066 80273087 -72264172 + (CAAGT)n Simple_repeat Simple_repeat 5 25 0 4 1197 402 21 0 0 chr5 80273571 80273618 -72263641 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1197 288 0 0 0 chr5 80273618 80273649 -72263610 + (GA)n Simple_repeat Simple_repeat 2 33 0 4 1197 365 382 18 6 chr5 80273679 80273845 -72263414 + B4 SINE B4 50 217 -75 4 1197 297 0 0 0 chr5 80273894 80273927 -72263332 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1197 1662 224 23 91 chr5 80273927 80274369 -72262890 + RMER1B Other Other 651 1062 -4 4 1197 21 0 0 0 chr5 80275187 80275208 -72262051 + AT_rich Low_complexity Low_complexity 1 21 0 4 1197 426 20 0 0 chr5 80275414 80275465 -72261794 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1197 780 153 0 0 chr5 80276502 80276639 -72260620 + GA-rich Low_complexity Low_complexity 4 140 0 4 1197 620 208 154 30 chr5 80276748 80277057 -72260202 + Lx9 LINE L1 7211 7557 -87 4 1197 35424 34 1 0 chr5 80277114 80282981 -72254278 + L1Md_T LINE L1 1 5589 -297 4 1197 8971 6 0 0 chr5 80282981 80283977 -72253282 + L1Md_T LINE L1 5590 6585 0 4 1197 24 0 0 0 chr5 80284098 80284122 -72253137 + AT_rich Low_complexity Low_complexity 1 24 0 4 1197 1012 116 0 0 chr5 80284186 80284332 -72252927 - B1_Mus1 SINE Alu 0 148 3 4 1197 3833 12 0 0 chr5 80285502 80285962 -72251297 + L1Md_A LINE L1 6151 6582 0 4 1197 22 70 0 0 chr5 80286058 80286101 -72251158 + AT_rich Low_complexity Low_complexity 1 43 0 4 1197 2730 196 4 101 chr5 80287840 80288516 -72248743 - RMER19C LTR ERVK 0 611 1 4 1197 252 100 0 0 chr5 80288889 80288929 -72248330 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1197 2568 199 182 31 chr5 80289067 80289848 -72247411 - RLTR25A LTR ERVK 0 1103 1 4 1197 4052 116 57 1 chr5 80289848 80290641 -72246618 - L1_Mm LINE L1 -64 5819 4890 4 1197 240 111 0 0 chr5 80291188 80291233 -72246026 + (T)n Simple_repeat Simple_repeat 1 45 0 4 1197 472 30 30 0 chr5 80291614 80291680 -72245579 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1197 5770 190 18 24 chr5 80291897 80293026 -72244233 + Lx4A LINE L1 5930 7051 -7 4 1197 180 0 0 0 chr5 80293031 80293051 -72244208 + (TTAAA)n Simple_repeat Simple_repeat 4 23 0 4 1197 1207 332 73 14 chr5 80293093 80293679 -72243580 + Lx8 LINE L1 6428 7048 -425 4 1197 313 320 53 29 chr5 80293761 80293967 -72243292 + Lx7 LINE L1 7039 7249 -447 4 1197 621 269 15 0 chr5 80294250 80294380 -72242879 - Lx7 LINE L1 -975 6721 6590 4 1197 35 54 0 0 chr5 80295573 80295629 -72241630 + AT_rich Low_complexity Low_complexity 1 56 0 4 1197 502 241 252 0 chr5 80295676 80295847 -72241412 - B3 SINE B2 -2 214 1 4 1197 728 221 181 55 chr5 80296344 80296670 -72240589 - Lx9 LINE L1 -20 7624 7258 4 1197 1281 290 17 42 chr5 80296679 80297150 -72240109 + Lx9 LINE L1 6811 7269 -375 4 1197 22 0 0 0 chr5 80297150 80297172 -72240087 + AT_rich Low_complexity Low_complexity 1 22 0 4 1197 21 57 0 0 chr5 80297328 80297363 -72239896 + AT_rich Low_complexity Low_complexity 1 35 0 4 1197 405 70 0 0 chr5 80297965 80298022 -72239237 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1197 626 124 8 0 chr5 80298022 80298143 -72239116 + (GA)n Simple_repeat Simple_repeat 1 122 0 4 1197 2958 170 13 4 chr5 80298272 80298803 -72238456 - L1_Mur2 LINE L1 -624 5253 4718 4 1197 4618 111 10 7 chr5 80298818 80299526 -72237733 + L1_Mus4 LINE L1 5924 6633 -3 4 1197 24 85 0 0 chr5 80300531 80300590 -72236669 + AT_rich Low_complexity Low_complexity 1 59 0 4 1197 312 27 0 0 chr5 80300748 80300785 -72236474 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1197 321 26 0 0 chr5 80300785 80300822 -72236437 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1197 22 56 0 0 chr5 80301435 80301471 -72235788 + AT_rich Low_complexity Low_complexity 1 36 0 4 1197 8294 144 42 4 chr5 80301609 80303342 -72233917 - Lx3B LINE L1 -3 6970 5163 4 1197 4890 45 5 0 chr5 80304397 80304996 -72232263 + L1Md_T LINE L1 5979 6580 -2 4 1197 23 23 0 44 chr5 80305979 80305997 -72231262 + AT_rich Low_complexity Low_complexity 1 18 0 4 1197 1036 92 14 0 chr5 80305997 80306139 -72231120 + B1_Mus2 SINE Alu 2 145 -2 4 1197 260 0 57 0 chr5 80306139 80306174 -72231085 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 1197 23 23 0 44 chr5 80306174 80306199 -72231060 + AT_rich Low_complexity Low_complexity 1 24 0 4 1197 190 136 22 22 chr5 80306393 80306438 -72230821 + CT-rich Low_complexity Low_complexity 3 47 0 4 1197 312 122 0 0 chr5 80306722 80306771 -72230488 + MusHAL1 LINE L1 2230 2278 -434 4 1197 1150 229 131 33 chr5 80306771 80307046 -72230213 + MTEa LTR MaLR 36 337 -42 4 1197 4208 187 26 9 chr5 80307050 80307926 -72229333 + L1_Mur2 LINE L1 3463 4353 -1524 4 1197 6698 184 55 12 chr5 80308312 80309923 -72227336 - Lx3C LINE L1 0 6976 5297 4 1197 4179 158 35 72 chr5 80309923 80310278 -72226981 + L1_Mur2 LINE L1 4394 4717 -1169 4 1197 441 0 0 0 chr5 80310278 80310327 -72226932 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 4 1197 4179 158 35 72 chr5 80310327 80310892 -72226367 + L1_Mur2 LINE L1 4718 5279 -607 4 1197 1013 139 6 0 chr5 80311070 80311243 -72226016 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 4 1197 324 391 54 46 chr5 80311322 80311563 -72225696 - B4A SINE B4 0 292 50 4 1197 373 311 37 7 chr5 80312255 80312391 -72224868 - MTD LTR MaLR -56 363 224 4 1197 375 23 0 0 chr5 80312502 80312546 -72224713 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 4 1197 572 340 86 8 chr5 80312547 80312694 -72224565 + Lx8 LINE L1 6218 6367 -1106 4 1197 219 69 0 0 chr5 80312694 80312723 -72224536 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 4 1197 842 346 227 15 chr5 80312723 80313434 -72223825 + Lx8 LINE L1 6368 7239 -234 4 1197 829 214 147 77 chr5 80313488 80313680 -72223579 - ORR1D1 LTR MaLR -2 372 165 4 1197 600 14 0 0 chr5 80313680 80313749 -72223510 + (GA)n Simple_repeat Simple_repeat 2 70 0 4 1197 829 214 147 77 chr5 80313749 80313855 -72223404 - ORR1D1 LTR MaLR -210 164 54 4 1197 433 284 6 55 chr5 80314446 80314610 -72222649 - Lx4A LINE L1 -1 7057 6902 4 1197 522 0 0 0 chr5 80315275 80315333 -72221926 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1197 5096 122 16 1 chr5 80315374 80316147 -72221112 - L1_Mus4 LINE L1 -8 6628 5845 4 1197 4492 160 46 0 chr5 80316147 80316930 -72220329 + L1_Mus4 LINE L1 5005 5823 -60 4 1197 268 222 40 40 chr5 80316961 80317036 -72220223 + RLTR25B LTR ERVK 423 497 -531 4 1197 272 216 0 98 chr5 80316969 80317051 -72220208 + MT2B LTR ERVL 191 264 -337 4 1197 813 47 0 0 chr5 80316980 80317086 -72220173 + B1_Mus2 SINE Alu 42 147 0 4 1197 405 0 0 0 chr5 80317086 80317131 -72220128 + (A)n Simple_repeat Simple_repeat 1 45 0 4 1197 4034 70 0 11 chr5 80317295 80317831 -72219428 - L1Md_F2 LINE L1 -2 6580 6051 5 1197 879 98 53 0 chr5 80318517 80318650 -72218609 + B2_Mm2 SINE B2 7 146 -49 5 1197 2244 109 30 18 chr5 80318650 80318986 -72218273 + Lx LINE L1 6213 6552 -102 5 1197 21 82 0 0 chr5 80319087 80319136 -72218123 + AT_rich Low_complexity Low_complexity 1 49 0 5 1197 294 214 61 0 chr5 80319137 80319235 -72218024 - Lx9 LINE L1 -1 7643 7540 5 1197 540 45 0 0 chr5 80319278 80319345 -72217914 + (TG)n Simple_repeat Simple_repeat 2 68 0 5 1197 744 335 19 29 chr5 80319441 80319752 -72217507 - Lx7 LINE L1 -1206 6490 6183 5 1197 765 251 0 0 chr5 80319762 80319925 -72217334 - Lx7 LINE L1 -1937 5759 5597 5 1197 33 56 0 0 chr5 80320555 80320609 -72216650 + AT_rich Low_complexity Low_complexity 1 54 0 5 1197 249 33 0 0 chr5 80321615 80321645 -72215614 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1197 904 356 18 26 chr5 80321860 80322318 -72214941 - Lx9 LINE L1 -289 7355 6902 5 1197 392 224 139 9 chr5 80322315 80322423 -72214836 + Lx8 LINE L1 4814 4935 -912 5 1197 807 275 25 0 chr5 80322429 80322629 -72214630 + B3 SINE B2 8 212 -4 5 1197 1627 280 67 30 chr5 80322653 80323391 -72213868 + Lx8 LINE L1 4915 5714 -1759 5 1197 188 86 0 28 chr5 80323396 80323432 -72213827 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 5 1197 1087 69 7 7 chr5 80323432 80323578 -72213681 - B1_Mus1 SINE Alu 0 148 3 5 1197 229 312 31 38 chr5 80323681 80323841 -72213418 + Lx8 LINE L1 5770 5928 -1716 5 1197 21 0 0 0 chr5 80324571 80324592 -72212667 + AT_rich Low_complexity Low_complexity 1 21 0 5 1197 1740 82 0 0 chr5 80324597 80324828 -72212431 - L1_Mus1 LINE L1 0 6567 6337 5 1197 326 277 12 24 chr5 80324855 80324940 -72212319 - B4 SINE B4 -204 88 5 5 1197 1297 163 82 0 chr5 80326075 80326320 -72210939 - RMER6C LTR ERVK -1 689 425 5 1197 304 191 14 56 chr5 80326440 80326512 -72210747 - MYSERV6-int LTR ERVK -63 3114 3046 5 1197 521 221 10 0 chr5 80326505 80326609 -72210650 - MYSERV6-int LTR ERVK -70 3107 3003 5 1197 1370 222 68 6 chr5 80326656 80327152 -72210107 - MYSERV6-int LTR ERVK -4348 4611 4156 5 1197 1464 140 4 0 chr5 80327163 80327399 -72209860 - RMER6C LTR ERVK 0 690 454 5 1197 202 162 27 0 chr5 80329545 80329582 -72207677 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1197 207 69 0 0 chr5 80329597 80329626 -72207633 + (TC)n Simple_repeat Simple_repeat 1 29 0 5 1197 264 122 0 0 chr5 80329628 80329669 -72207590 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1197 204 163 0 0 chr5 80330422 80330465 -72206794 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 5 1197 560 139 0 19 chr5 80331271 80331374 -72205885 + GA-rich Low_complexity Low_complexity 4 104 0 5 1197 321 136 0 0 chr5 80331536 80331602 -72205657 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1197 180 163 0 0 chr5 80332416 80332459 -72204800 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1197 3574 48 0 7 chr5 80333028 80333471 -72203788 - L1Md_F2 LINE L1 0 6582 6143 5 1197 27 0 0 0 chr5 80333572 80333599 -72203660 + AT_rich Low_complexity Low_complexity 1 27 0 5 1197 215 73 49 0 chr5 80334069 80334110 -72203149 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 5 1197 183 302 33 55 chr5 80334686 80334777 -72202482 + L4 LINE RTE 1320 1408 -621 5 1197 23 33 0 0 chr5 80334817 80334847 -72202412 + AT_rich Low_complexity Low_complexity 1 30 0 5 1197 929 221 63 43 chr5 80334962 80335285 -72201974 - Lx5 LINE L1 0 7058 6693 5 1197 975 70 8 0 chr5 80335970 80336098 -72201161 + B1_Mus2 SINE Alu 6 134 -13 5 1197 212 31 0 59 chr5 80336098 80336132 -72201127 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1197 398 192 13 200 chr5 80336132 80336153 -72201106 + PB1 SINE Alu 116 127 0 5 1197 523 309 62 73 chr5 80336213 80336639 -72200620 + MT2A LTR ERVL 1 553 -48 5 1197 263 152 34 0 chr5 80337058 80337117 -72200142 + GA-rich Low_complexity Low_complexity 2 62 0 5 1197 25 0 0 0 chr5 80337201 80337226 -72200033 + AT_rich Low_complexity Low_complexity 1 25 0 5 1197 330 313 78 47 chr5 80337272 80337530 -72199729 - L1M2 LINE L1 -692 5599 5334 5 1197 7930 180 43 44 chr5 80337977 80339349 -72197910 + L1_Mur2 LINE L1 3996 5342 -535 5 1197 3444 127 17 2 chr5 80339349 80339884 -72197375 + Lx LINE L1 6107 6649 -5 5 1197 7930 180 43 44 chr5 80339884 80340336 -72196923 + L1_Mur2 LINE L1 5343 5816 -61 5 1197 2562 228 47 13 chr5 80340358 80341058 -72196201 + Lx2B LINE L1 6224 6986 -11 5 1197 356 348 15 7 chr5 80341094 80341230 -72196029 + B1_Mur4 SINE Alu 9 145 -5 5 1197 438 363 71 12 chr5 80341520 80341690 -72195569 + B3 SINE B2 1 180 -36 5 1197 182 368 62 23 chr5 80342057 80342185 -72195074 - MIR SINE MIR -128 134 2 5 1197 715 214 6 6 chr5 80342524 80342684 -72194575 - Lx7 LINE L1 -4 7692 7533 5 1197 649 241 22 0 chr5 80342698 80342835 -72194424 + B1_Mur4 SINE Alu 1 140 -10 5 1197 2560 247 54 37 chr5 80342846 80342983 -72194276 - Lx7 LINE L1 -201 7495 7364 5 1197 324 0 0 0 chr5 80342983 80343019 -72194240 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 5 1197 2560 247 54 37 chr5 80343019 80343128 -72194131 - Lx7 LINE L1 -333 7363 7253 5 1197 3456 86 34 26 chr5 80343128 80343632 -72193627 + L1Md_F2 LINE L1 6063 6570 -12 5 1197 2560 247 54 37 chr5 80343632 80344112 -72193147 - Lx7 LINE L1 -444 7252 6756 5 1197 302 290 93 39 chr5 80344381 80344510 -72192749 + B1_Mur2 SINE Alu 5 140 -9 5 1197 484 152 20 0 chr5 80345058 80345157 -72192102 + (TA)n Simple_repeat Simple_repeat 2 102 0 5 1197 21 36 0 0 chr5 80345878 80345906 -72191353 + AT_rich Low_complexity Low_complexity 1 28 0 5 1197 24 67 0 0 chr5 80346328 80346373 -72190886 + AT_rich Low_complexity Low_complexity 1 45 0 5 1197 421 187 19 31 chr5 80346414 80346602 -72190657 + MYSERV6-int LTR ERVK 1033 1202 -1124 5 1197 368 206 28 0 chr5 80346610 80346751 -72190508 + (TA)n Simple_repeat Simple_repeat 2 146 0 5 1197 189 0 0 0 chr5 80346751 80346772 -72190487 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 149 3704 209 42 30 chr5 80346773 80347743 -72189516 + MYSERV6-int LTR ERVK 7926 8907 -52 5 1198 1797 266 12 16 chr5 80347911 80348335 -72188924 + Lx5 LINE L1 6629 7050 0 5 1198 244 345 84 0 chr5 80349517 80349636 -72187623 + B1F SINE Alu 10 138 -11 5 1198 4742 76 3 5 chr5 80350020 80350665 -72186594 - L1Md_F2 LINE L1 0 6582 5939 5 1198 398 182 18 26 chr5 80350748 80350861 -72186398 - L1Md_F2 LINE L1 0 6582 6471 5 1198 1714 102 8 0 chr5 80350868 80351113 -72186146 - L1_Mus2 LINE L1 -1 6565 6319 5 1198 822 48 19 0 chr5 80351113 80351217 -72186042 + L1_Mus2 LINE L1 6218 6323 -243 5 1198 25 75 0 0 chr5 80351508 80351561 -72185698 + AT_rich Low_complexity Low_complexity 1 53 0 5 1198 22 80 0 0 chr5 80351747 80351797 -72185462 + AT_rich Low_complexity Low_complexity 1 50 0 5 1198 2118 83 10 0 chr5 80352234 80352524 -72184735 + L1_Mus1 LINE L1 6275 6567 0 5 1198 288 0 0 0 chr5 80353371 80353403 -72183856 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1198 487 317 80 32 chr5 80353569 80353820 -72183439 + Lx8 LINE L1 7069 7331 -142 5 1198 245 185 0 0 chr5 80353853 80353907 -72183352 + (ATG)n Simple_repeat Simple_repeat 3 56 0 5 1198 457 211 80 16 chr5 80354016 80354141 -72183118 - RMER5 LTR ERV1 -9 525 393 5 1198 420 117 13 0 chr5 80354182 80354259 -72183000 - Lx LINE L1 -6 6648 6571 5 1198 2772 122 34 32 chr5 80354259 80354733 -72182526 + RLTR13B2 LTR ERVK 1 475 -347 5 1198 32297 69 3 5 chr5 80354733 80355882 -72181377 - L1Md_F2 LINE L1 -187 6395 5248 5 1198 458 95 42 0 chr5 80355882 80355977 -72181282 + (TA)n Simple_repeat Simple_repeat 2 100 0 5 1198 32297 99 16 7 chr5 80355977 80360869 -72176390 - L1Md_F2 LINE L1 -636 5247 306 5 1198 245 178 0 0 chr5 80360866 80360911 -72176348 - L1Md_F LINE L1 -5987 532 488 5 1198 6250 93 23 5 chr5 80361850 80362727 -72174532 - RLTR13B1 LTR ERVK 0 893 1 5 1198 1846 175 13 84 chr5 80363374 80363755 -72173504 - ORR1B1 LTR MaLR 0 394 41 5 1198 283 196 0 0 chr5 80363762 80363808 -72173451 - ORR1B1-int LTR MaLR 0 1963 1918 5 1198 323 216 45 73 chr5 80363833 80363943 -72173316 + ORR1A3-int LTR MaLR 1 107 -1856 5 1198 2617 234 19 19 chr5 80363913 80364540 -72172719 + ORR1A3-int LTR MaLR 14 640 -1323 5 1198 421 192 0 0 chr5 80364576 80364649 -72172610 + MT2C_Mm LTR ERVL 1 73 -402 5 1198 225 179 47 23 chr5 80365118 80365204 -72172055 + (TA)n Simple_repeat Simple_repeat 1 88 0 5 1198 270 0 0 0 chr5 80365523 80365553 -72171706 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 5 1198 22 0 0 0 chr5 80366937 80366959 -72170300 + AT_rich Low_complexity Low_complexity 1 22 0 5 1198 631 364 28 24 chr5 80367005 80367292 -72169967 + B4A SINE B4 3 290 -2 5 1198 324 339 23 30 chr5 80367825 80367956 -72169303 - MLT1A1 LTR MaLR 0 408 279 5 1198 264 181 0 0 chr5 80368031 80368114 -72169145 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 5 1198 1069 349 90 11 chr5 80368510 80369243 -72168016 - Lx8 LINE L1 -350 7123 6333 5 1198 23 0 0 0 chr5 80369364 80369387 -72167872 + AT_rich Low_complexity Low_complexity 1 23 0 5 1198 183 188 227 30 chr5 80370398 80370464 -72166795 - MIR SINE MIR -102 106 28 5 1198 300 53 0 0 chr5 80370641 80370679 -72166580 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 5 1198 1480 214 130 33 chr5 80370686 80371058 -72166201 + RLTR16 LTR ERVK 1 419 -86 5 1198 462 18 0 0 chr5 80371058 80371113 -72166146 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1198 1480 214 130 33 chr5 80371113 80371200 -72166059 + RLTR16 LTR ERVK 420 505 0 5 1198 917 214 0 0 chr5 80371208 80371387 -72165872 - Lx5 LINE L1 -480 6570 6408 5 1198 451 284 98 12 chr5 80371384 80371548 -72165711 + Lx5 LINE L1 6841 7018 -32 5 1198 4608 76 2 20 chr5 80371681 80372315 -72164944 - L1Md_F2 LINE L1 -368 5515 4894 5 1198 721 85 0 0 chr5 80372314 80372408 -72164851 + L1Md_F2 LINE L1 5492 5585 -298 5 1198 7444 76 1 14 chr5 80372409 80373409 -72163850 + L1Md_F2 LINE L1 5587 6573 -9 5 1198 261 0 0 0 chr5 80373789 80373818 -72163441 + (CTAA)n Simple_repeat Simple_repeat 3 31 0 5 1198 684 70 0 0 chr5 80373818 80373904 -72163355 - L1_Mm LINE L1 -3611 2272 2187 5 1198 23 0 0 0 chr5 80373984 80374007 -72163252 + AT_rich Low_complexity Low_complexity 1 23 0 5 1198 277 365 31 0 chr5 80376363 80376459 -72160800 + Lx8 LINE L1 7176 7274 -199 5 1198 292 349 88 39 chr5 80376917 80377099 -72160160 + MLT1A0 LTR MaLR 166 356 -9 5 1198 2615 269 31 36 chr5 80377099 80377914 -72159345 - Lx9 LINE L1 -264 7380 6570 5 1198 5728 51 12 4 chr5 80378580 80379305 -72157954 - L1Md_F2 LINE L1 -3 6579 5849 5 1198 189 94 0 0 chr5 80379994 80380026 -72157233 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1198 441 0 0 0 chr5 80380026 80380075 -72157184 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 5 1198 606 65 120 0 chr5 80380075 80380167 -72157092 - B1_Mus2 SINE Alu -3 144 42 6 1198 355 122 39 39 chr5 80380101 80380178 -72157081 - RLTR25B LTR ERVK -522 506 430 6 1198 981 73 80 0 chr5 80380179 80380316 -72156943 - B1_Mus1 SINE Alu 0 148 1 6 1198 9263 152 46 9 chr5 80380339 80382890 -72154369 - L1_Mus4 LINE L1 -5 6631 4009 6 1198 34694 66 1 11 chr5 80383556 80385799 -72151460 - L1Md_F2 LINE L1 -2 6580 4423 6 1198 2760 7 0 0 chr5 80385799 80386109 -72151150 + L1Md_A LINE L1 6273 6582 0 6 1198 34694 82 1 34 chr5 80386109 80390224 -72147035 - L1Md_F2 LINE L1 -1461 4422 389 6 1198 462 49 0 0 chr5 80391518 80391579 -72145680 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1198 2131 147 30 11 chr5 80392214 80392578 -72144681 + Lx LINE L1 6228 6598 -56 6 1198 639 182 14 49 chr5 80392578 80392722 -72144537 + RLTR11A LTR ERVK 390 528 0 6 1198 675 249 71 67 chr5 80392726 80392945 -72144314 - L1_Mur2 LINE L1 -1024 4853 4629 6 1198 237 65 0 0 chr5 80392945 80392976 -72144283 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 6 1198 675 249 71 67 chr5 80392976 80393010 -72144249 - L1_Mur2 LINE L1 -1249 4628 4599 6 1198 459 315 99 71 chr5 80393066 80393459 -72143800 + Lx9 LINE L1 6954 7357 -287 6 1198 23 33 0 0 chr5 80393463 80393493 -72143766 + AT_rich Low_complexity Low_complexity 1 30 0 6 1198 369 161 0 0 chr5 80393545 80393632 -72143627 + (TAGA)n Simple_repeat Simple_repeat 2 88 0 6 1198 281 179 36 0 chr5 80393685 80393741 -72143518 + Lx9 LINE L1 7384 7441 -203 6 1198 384 43 14 55 chr5 80394371 80394444 -72142815 + (CA)n Simple_repeat Simple_repeat 1 70 0 6 1198 729 161 0 33 chr5 80395910 80396090 -72141169 + G-rich Low_complexity Low_complexity 5 178 0 6 1198 405 0 0 0 chr5 80397354 80397399 -72139860 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 6 1198 31 58 0 0 chr5 80397571 80397623 -72139636 + AT_rich Low_complexity Low_complexity 1 52 0 6 1198 306 295 143 0 chr5 80398253 80398358 -72138901 - Tigger5 DNA MER2_type -2186 220 101 6 1198 3355 44 49 76 chr5 80398690 80399178 -72138081 + IAPLTR2_Mm LTR ERVK 1 475 0 6 1198 306 335 65 15 chr5 80399195 80399395 -72137864 + L1ME3A LINE L1 5657 5866 -307 6 1198 4019 211 92 72 chr5 80399482 80399985 -72137274 - L1_Mur3 LINE L1 -1456 4424 3879 6 1198 1409 88 0 20 chr5 80399985 80400183 -72137076 - B2_Mm2 SINE B2 0 195 2 6 1198 4019 211 92 72 chr5 80400183 80401130 -72136129 - L1_Mur3 LINE L1 -2002 3878 2946 6 1198 3650 167 22 27 chr5 80401131 80401827 -72135432 + Lx LINE L1 5963 6654 0 6 1198 3822 94 20 0 chr5 80401838 80402320 -72134939 - L1_Mur1 LINE L1 -2086 3800 3315 6 1198 225 0 0 0 chr5 80402320 80402345 -72134914 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1198 3822 94 20 0 chr5 80402345 80402423 -72134836 - L1_Mur1 LINE L1 -2572 3314 3231 6 1198 7133 109 25 1 chr5 80402423 80403485 -72133774 + Lx3_Mus LINE L1 5922 7009 0 6 1198 412 262 80 7 chr5 80403500 80403650 -72133609 - L1_Mur3 LINE L1 -2921 2959 2799 6 1198 2173 197 146 20 chr5 80403680 80404340 -72132919 - RMER6A LTR ERVK -7 749 2 6 1198 3577 241 66 10 chr5 80404341 80405513 -72131746 - L1_Mur3 LINE L1 -3082 2798 1562 6 1198 5430 125 25 12 chr5 80405513 80407118 -72130141 + L1VL2 LINE L1 95 1721 -1894 6 1198 9258 145 19 8 chr5 80407107 80409460 -72127799 + Lx LINE L1 4271 6653 -1 6 1198 1027 222 40 72 chr5 80409474 80409907 -72127352 - L1_Mur3 LINE L1 -4306 1574 1156 6 1198 784 121 0 0 chr5 80409907 80410023 -72127236 + ORR1A3 LTR MaLR 211 326 0 6 1198 408 228 88 0 chr5 80410353 80410467 -72126792 - Lx9 LINE L1 -193 7451 7328 6 1198 228 272 88 0 chr5 80410487 80410601 -72126658 + Lx9 LINE L1 7458 7581 -63 6 1198 413 216 108 0 chr5 80410794 80410896 -72126363 + Lx9 LINE L1 7385 7497 -147 6 1198 279 231 90 8 chr5 80411458 80411580 -72125679 + Lx9 LINE L1 7513 7644 0 6 1198 249 287 11 0 chr5 80412306 80412393 -72124866 + L1MA9 LINE L1 6181 6268 -44 6 1198 269 118 0 19 chr5 80412699 80412751 -72124508 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1198 6684 76 5 7 chr5 80413383 80414303 -72122956 - L1Md_F2 LINE L1 -12 6570 5678 6 1198 550 292 19 140 chr5 80414546 80414753 -72122506 - B3A SINE B2 -8 187 6 6 1198 621 91 250 52 chr5 80414788 80414904 -72122355 + B1_Mus1 SINE Alu 1 139 -9 6 1198 201 39 0 0 chr5 80414904 80414930 -72122329 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1198 358 316 79 67 chr5 80415132 80415308 -72121951 - Lx8 LINE L1 -5 7468 7283 6 1198 510 17 0 0 chr5 80415308 80415367 -72121892 + (TA)n Simple_repeat Simple_repeat 1 59 0 6 1198 358 316 79 67 chr5 80415367 80415519 -72121740 - Lx8 LINE L1 -191 7282 7136 6 1198 35 24 0 0 chr5 80415777 80415819 -72121440 + AT_rich Low_complexity Low_complexity 1 42 0 6 1198 1503 147 15 4 chr5 80415982 80416242 -72121017 + Lx LINE L1 6384 6646 -8 6 1198 1248 66 0 0 chr5 80416765 80416932 -72120327 + (TCTA)n Simple_repeat Simple_repeat 2 168 0 6 1198 297 0 0 0 chr5 80417035 80417068 -72120191 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 6 1198 2097 128 28 0 chr5 80417068 80417389 -72119870 - Lx3_Mus LINE L1 -24 6985 6656 6 1198 32 26 0 0 chr5 80417891 80417930 -72119329 + AT_rich Low_complexity Low_complexity 1 39 0 6 1198 279 309 11 44 chr5 80418038 80418257 -72119002 + GA-rich Low_complexity Low_complexity 1 211 0 6 1198 321 68 0 0 chr5 80418465 80418509 -72118750 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1198 234 412 47 7 chr5 80418751 80418900 -72118359 - MLT1F2 LTR MaLR -274 286 132 6 1198 240 290 16 0 chr5 80419038 80419100 -72118159 - MLT1F2-int LTR MaLR -95 1394 1332 6 1198 377 378 19 19 chr5 80419258 80419417 -72117842 - RSINE1 SINE B4 -2 163 5 6 1198 815 268 56 134 chr5 80420207 80420565 -72116694 + MTD LTR MaLR 82 411 -8 6 1198 2387 46 0 10 chr5 80421327 80421635 -72115624 + L1Md_F2 LINE L1 6276 6580 -2 6 1198 36079 34 4 13 chr5 80422006 80427406 -72109853 + L1Md_A LINE L1 237 5586 -297 6 1198 8205 38 4 0 chr5 80427406 80428397 -72108862 + L1Md_A LINE L1 5587 6581 -1 6 1198 1413 198 73 29 chr5 80428611 80428702 -72108557 + Lx5 LINE L1 817 906 -6180 6 1198 1173 145 5 28 chr5 80428702 80428915 -72108344 + Lx2 LINE L1 6790 6997 0 6 1198 1413 198 73 29 chr5 80428915 80429208 -72108051 + Lx5 LINE L1 907 1218 -5868 6 1198 2270 211 26 28 chr5 80429211 80429753 -72107506 + Lx5 LINE L1 5612 6152 -898 6 1198 4660 163 76 34 chr5 80429760 80430239 -72107020 + RMER17B LTR ERVK 1 526 -432 6 1198 1808 78 12 8 chr5 80430239 80430496 -72106763 + L1Md_F2 LINE L1 6321 6578 -4 6 1198 4660 163 76 34 chr5 80430496 80430935 -72106324 + RMER17B LTR ERVK 527 958 0 6 1198 2158 242 9 55 chr5 80430936 80431478 -72105781 + Lx5 LINE L1 6146 6662 -388 6 1198 573 83 0 0 chr5 80432559 80432643 -72104616 + (TG)n Simple_repeat Simple_repeat 1 84 0 6 1198 396 40 0 0 chr5 80432644 80432694 -72104565 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1198 480 48 0 0 chr5 80432694 80432757 -72104502 + (TG)n Simple_repeat Simple_repeat 1 63 0 6 1198 941 284 168 6 chr5 80432758 80433091 -72104168 + ORR1B1 LTR MaLR 6 392 -2 6 1198 1246 141 110 0 chr5 80433455 80433682 -72103577 - Lx2A1 LINE L1 -2 7006 6755 6 1198 180 0 0 0 chr5 80434485 80434505 -72102754 + (TGG)n Simple_repeat Simple_repeat 3 22 0 6 1198 315 272 154 43 chr5 80435547 80435735 -72101524 + B3 SINE B2 3 211 -5 6 1198 6928 68 7 42 chr5 80435764 80436738 -72100521 - L1Md_F2 LINE L1 -30 6552 5628 6 1198 953 129 0 13 chr5 80436738 80436875 -72100384 + B1_Mus1 SINE Alu 1 137 -11 6 1198 282 29 0 0 chr5 80436875 80436910 -72100349 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1198 953 129 0 13 chr5 80436910 80436921 -72100338 + B1_Mus1 SINE Alu 138 147 -1 6 1198 194 164 18 0 chr5 80437229 80437284 -72099975 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1198 1330 302 190 19 chr5 80437284 80438217 -72099042 - Lx9 LINE L1 -17 7627 6536 6 1198 712 289 112 80 chr5 80438327 80439012 -72098247 + Lx9 LINE L1 6911 7617 -27 6 1198 37 81 0 0 chr5 80439028 80439114 -72098145 + AT_rich Low_complexity Low_complexity 1 86 0 6 1198 201 138 0 0 chr5 80439447 80439476 -72097783 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1198 256 273 37 35 chr5 80439542 80439642 -72097617 - PB1D10 SINE Alu -45 104 3 6 1198 6895 52 5 0 chr5 80439934 80440781 -72096478 - L1Md_F2 LINE L1 0 6582 5732 6 1198 1926 179 0 0 chr5 80440991 80441316 -72095943 + L1VL4 LINE L1 19 343 -5959 6 1198 1317 62 0 58 chr5 80441308 80441514 -72095745 + MusHAL1 LINE L1 203 396 -2316 6 1198 22 0 0 0 chr5 80442583 80442605 -72094654 + AT_rich Low_complexity Low_complexity 1 22 0 6 1198 23 0 0 0 chr5 80442692 80442715 -72094544 + AT_rich Low_complexity Low_complexity 1 23 0 6 1198 26 50 0 0 chr5 80442854 80442894 -72094365 + AT_rich Low_complexity Low_complexity 1 40 0 6 1198 26 30 0 0 chr5 80443249 80443282 -72093977 + AT_rich Low_complexity Low_complexity 1 33 0 6 1198 380 349 36 80 chr5 80443761 80444035 -72093224 + MLT2F LTR ERVL 402 663 0 6 1198 307 320 116 34 chr5 80444128 80444422 -72092837 + ERVL-E-int LTR ERVL 68 385 -5282 6 1198 263 357 30 10 chr5 80445347 80445446 -72091813 + MLT2F LTR ERVL 189 289 -374 6 1198 23 33 0 0 chr5 80445806 80445836 -72091423 + AT_rich Low_complexity Low_complexity 1 30 0 6 1198 2014 188 6 43 chr5 80445915 80446381 -72090878 + RLTR11B LTR ERVK 1 449 -4 6 1198 1840 228 12 21 chr5 80446849 80447274 -72089985 - MTC LTR MaLR 0 421 1 6 1198 415 346 68 0 chr5 80447378 80447511 -72089748 + RSINE1 SINE B4 3 144 -21 6 1198 258 296 18 36 chr5 80448435 80448547 -72088712 - Lx6 LINE L1 -8 7452 7343 6 1198 615 281 12 0 chr5 80448538 80448705 -72088554 + Lx6 LINE L1 7107 7275 -185 6 1198 397 83 69 0 chr5 80449021 80449093 -72088166 + T-rich Low_complexity Low_complexity 4 80 0 6 1198 180 135 0 0 chr5 80449185 80449222 -72088037 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 6 1198 196 176 0 0 chr5 80450077 80450111 -72087148 + L3 LINE CR1 3260 3293 -1196 6 1198 1303 199 15 19 chr5 80450349 80450615 -72086644 + RMER10B LTR ERVL 1 265 -133 6 1198 213 39 0 0 chr5 80450615 80450641 -72086618 + (TCC)n Simple_repeat Simple_repeat 2 27 0 6 1198 297 280 12 96 chr5 80450641 80450807 -72086452 + RMER10B LTR ERVL 195 346 -52 6 1198 459 139 0 0 chr5 80450811 80450883 -72086376 + Lx3_Mus LINE L1 5793 5864 -1145 6 1198 2172 207 149 18 chr5 80451232 80452114 -72085145 + Lx2B LINE L1 5861 6857 -143 6 1198 31 0 0 0 chr5 80452325 80452356 -72084903 + AT_rich Low_complexity Low_complexity 1 31 0 6 1198 7466 82 2 1 chr5 80452380 80453552 -72083707 - L1_Mus2 LINE L1 -1 6565 5390 6 1198 1723 147 64 23 chr5 80454108 80454534 -72082725 + RMER17C LTR ERVK 19 439 -519 7 1198 192 40 0 0 chr5 80454641 80454666 -72082593 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 7 1198 1172 253 79 42 chr5 80454759 80455114 -72082145 + ORR1D2 LTR MaLR 3 370 0 7 1198 948 265 65 13 chr5 80455127 80455423 -72081836 + ORR1D2-int LTR MaLR 5 316 -1054 7 1198 1307 195 11 25 chr5 80456510 80456789 -72080470 - Lx4B LINE L1 -7 7051 6777 7 1198 22 35 0 0 chr5 80456805 80456834 -72080425 + AT_rich Low_complexity Low_complexity 1 29 0 7 1198 28 48 0 0 chr5 80457804 80457846 -72079413 + AT_rich Low_complexity Low_complexity 1 42 0 7 1198 187 328 0 17 chr5 80458002 80458061 -72079198 - MIR SINE MIR -137 125 68 7 1198 3485 97 32 21 chr5 80459190 80459632 -72077627 - Lx3_Mus LINE L1 0 7009 6555 7 1198 2419 135 64 38 chr5 80459632 80460102 -72077157 + RLTR45 LTR ERVK 1 482 0 7 1198 3485 97 32 21 chr5 80460102 80460186 -72077073 - Lx3_Mus LINE L1 -455 6554 6477 7 1198 3448 81 4 14 chr5 80460186 80460676 -72076583 + L1_Mur1 LINE L1 4985 5469 -417 7 1198 468 0 0 0 chr5 80460893 80460945 -72076314 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1198 1145 81 6 0 chr5 80460956 80461116 -72076143 - L1_Mus4 LINE L1 -276 6360 6200 7 1198 1696 93 0 16 chr5 80461116 80461367 -72075892 + L1_Mus4 LINE L1 6383 6629 -7 7 1198 2891 259 81 68 chr5 80461455 80463291 -72073968 - Lx5 LINE L1 -18 7032 5198 7 1198 275 367 56 21 chr5 80463374 80463516 -72073743 + B4A SINE B4 107 253 -39 7 1198 490 99 22 0 chr5 80463565 80463656 -72073603 + (CA)n Simple_repeat Simple_repeat 2 94 0 7 1198 366 23 0 0 chr5 80464321 80464364 -72072895 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1198 372 43 0 0 chr5 80464365 80464411 -72072848 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1198 410 259 42 35 chr5 80465272 80465416 -72071843 + RLTR23 LTR ERV1 286 430 0 7 1198 23 97 0 0 chr5 80465502 80465574 -72071685 + AT_rich Low_complexity Low_complexity 1 72 0 7 1198 331 343 66 28 chr5 80465820 80466033 -72071226 - ID_B1 SINE B4 -1 223 3 7 1198 399 212 0 23 chr5 80466729 80466816 -72070443 + B4 SINE B4 4 88 -204 7 1198 1767 190 31 20 chr5 80466998 80467353 -72069906 - ORR1B2 LTR MaLR -8 359 1 7 1198 180 0 0 0 chr5 80467744 80467764 -72069495 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1198 297 0 0 0 chr5 80467768 80467801 -72069458 + (CAA)n Simple_repeat Simple_repeat 2 34 0 7 1198 252 237 26 26 chr5 80467945 80468023 -72069236 - RMER15-int LTR ERVL -3683 1316 1239 7 1198 764 329 63 57 chr5 80468042 80468641 -72068618 - RMER15-int LTR ERVL -3936 1063 461 7 1198 240 325 39 0 chr5 80468852 80468929 -72068330 - RMER15 LTR ERVL -43 532 453 7 1198 465 34 0 0 chr5 80468988 80469047 -72068212 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1198 1459 200 162 11 chr5 80469791 80470150 -72067109 + MTC LTR MaLR 1 413 -8 7 1198 180 214 0 0 chr5 80471301 80471357 -72065902 + CT-rich Low_complexity Low_complexity 1 56 0 7 1198 1048 91 6 22 chr5 80471383 80471458 -72065801 + (TTCTCC)n Simple_repeat Simple_repeat 3 75 0 7 1198 1478 22 0 6 chr5 80471458 80471637 -72065622 + (TTC)n Simple_repeat Simple_repeat 3 180 0 7 1198 1048 91 6 22 chr5 80471637 80471741 -72065518 + (TTCTCC)n Simple_repeat Simple_repeat 1 104 0 7 1198 230 219 0 0 chr5 80471746 80471787 -72065472 + C-rich Low_complexity Low_complexity 1 41 0 7 1198 998 96 13 20 chr5 80472769 80472783 -72064476 - B1_Mus1 SINE Alu 0 148 136 7 1198 234 0 0 0 chr5 80472783 80472809 -72064450 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1198 998 96 13 20 chr5 80472809 80472943 -72064316 - B1_Mus1 SINE Alu -13 135 1 7 1198 35 41 0 0 chr5 80474073 80474122 -72063137 + AT_rich Low_complexity Low_complexity 1 49 0 7 1198 221 136 0 17 chr5 80474260 80474307 -72062952 + T-rich Low_complexity Low_complexity 15 60 0 7 1198 342 0 0 0 chr5 80474307 80474345 -72062914 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 7 1198 221 136 0 17 chr5 80474345 80474357 -72062902 + T-rich Low_complexity Low_complexity 3 14 0 7 1198 1010 116 7 0 chr5 80474357 80474504 -72062755 - B1_Mus1 SINE Alu 0 148 1 7 1198 432 55 0 0 chr5 80474647 80474702 -72062557 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1198 423 164 48 32 chr5 80474718 80474742 -72062517 - L1_Mur1 LINE L1 -555 5322 5297 7 1198 1869 137 70 42 chr5 80474742 80474855 -72062404 - Lx LINE L1 0 6654 6519 7 1198 243 0 0 0 chr5 80474855 80474882 -72062377 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 7 1198 1869 137 70 42 chr5 80474882 80475127 -72062132 - Lx LINE L1 -136 6518 6286 7 1198 424 218 10 0 chr5 80475127 80475228 -72062031 - L1_Mur1 LINE L1 -581 5305 5204 7 1198 45 19 0 0 chr5 80475228 80475280 -72061979 + AT_rich Low_complexity Low_complexity 1 52 0 7 1198 233 250 0 98 chr5 80476194 80476296 -72060963 - MLT2B2 LTR ERVL -8 554 463 7 1198 22 0 0 0 chr5 80477400 80477422 -72059837 + AT_rich Low_complexity Low_complexity 1 22 0 7 1198 248 191 32 0 chr5 80477805 80477868 -72059391 + Lx6 LINE L1 7391 7455 -5 7 1198 22 35 0 0 chr5 80477870 80477899 -72059360 + AT_rich Low_complexity Low_complexity 1 29 0 7 1199 27792 77 82 4 chr5 80478322 80483142 -72054117 + L1Md_F2 LINE L1 391 5586 -297 7 1199 8008 49 0 0 chr5 80483142 80484124 -72053135 + L1Md_F2 LINE L1 5587 6568 -14 7 1199 543 278 105 12 chr5 80484363 80484546 -72052713 + L1M2 LINE L1 4397 4621 -1522 7 1199 380 55 18 0 chr5 80484546 80484601 -72052658 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1199 543 318 42 40 chr5 80484601 80484970 -72052289 + L1M2 LINE L1 4622 4988 -1155 7 1199 22 56 0 0 chr5 80484971 80485007 -72052252 + AT_rich Low_complexity Low_complexity 1 36 0 7 1199 1503 115 4 22 chr5 80485007 80485239 -72052020 - L1_Mus1 LINE L1 0 6567 6340 7 1199 880 97 11 0 chr5 80485239 80485384 -72051875 + L1Md_F2 LINE L1 6183 6335 -247 7 1199 739 119 0 23 chr5 80485452 80485604 -72051655 - L1_Mur1 LINE L1 -507 5379 5232 7 1199 250 266 12 60 chr5 80485633 80485717 -72051542 + L2a LINE L2 3331 3410 -16 7 1199 29 47 0 0 chr5 80486627 80486670 -72050589 + AT_rich Low_complexity Low_complexity 1 43 0 7 1199 952 298 94 27 chr5 80486691 80487202 -72050057 + L1_Rod LINE L1 5290 5834 -13 7 1199 3116 3 43 0 chr5 80487239 80487591 -72049668 + IAPLTR1_Mm LTR ERVK 1 367 0 7 1199 21299 33 40 4 chr5 80487591 80490165 -72047094 + IAPEz-int LTR ERVK 8 2674 -3807 7 1199 9334 28 3 0 chr5 80490143 80491219 -72046040 + IAPEz-int LTR ERVK 5403 6481 0 7 1199 3116 3 43 0 chr5 80491219 80491571 -72045688 + IAPLTR1_Mm LTR ERVK 1 367 0 7 1199 284 397 11 5 chr5 80491796 80491981 -72045278 - Lx8 LINE L1 -412 7061 6876 7 1199 208 336 187 0 chr5 80493025 80493159 -72044100 + MIR SINE MIR 33 191 -71 7 1199 378 194 31 0 chr5 80493166 80493264 -72043995 - L1Md_F3 LINE L1 -1 6583 6483 7 1199 27 0 0 0 chr5 80493273 80493300 -72043959 + AT_rich Low_complexity Low_complexity 1 27 0 7 1199 1326 40 6 0 chr5 80493574 80493747 -72043512 - L1Md_A LINE L1 0 6582 6409 7 1199 1119 76 7 0 chr5 80494306 80494451 -72042808 + B1_Mus1 SINE Alu 3 148 0 7 1199 249 108 0 0 chr5 80494451 80494488 -72042771 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1199 279 140 0 0 chr5 80495642 80495692 -72041567 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 7 1199 376 218 48 16 chr5 80495874 80496000 -72041259 - Lx9 LINE L1 -1 7643 7514 7 1199 423 0 0 0 chr5 80496033 80496080 -72041179 + (TA)n Simple_repeat Simple_repeat 1 47 0 7 1199 631 332 71 30 chr5 80496232 80496499 -72040760 + MTEb LTR MaLR 92 369 -10 7 1199 609 14 0 0 chr5 80496499 80496569 -72040690 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 1199 281 322 46 69 chr5 80496569 80496699 -72040560 - B1_Mur1 SINE Alu -13 136 10 7 1199 25 51 0 0 chr5 80497810 80497849 -72039410 + AT_rich Low_complexity Low_complexity 1 39 0 7 1199 324 0 0 0 chr5 80498000 80498036 -72039223 + (TTG)n Simple_repeat Simple_repeat 3 38 0 7 1199 549 0 0 0 chr5 80498390 80498451 -72038808 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 7 1199 1012 297 21 64 chr5 80498590 80499172 -72038087 - Lx7 LINE L1 -1781 5915 5327 7 1199 1266 237 138 2 chr5 80499207 80499702 -72037557 - Lx9 LINE L1 -2 7642 7081 7 1199 426 285 48 30 chr5 80500810 80500982 -72036277 + ID_B1 SINE B4 91 266 -26 1 1199 419 338 30 15 chr5 80501754 80501952 -72035307 + B3 SINE B2 1 201 -15 2 1199 407 52 17 0 chr5 80502292 80502350 -72034909 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1199 261 0 0 0 chr5 80502350 80502378 -72034881 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1199 218 206 15 0 chr5 80502596 80502664 -72034595 + GA-rich Low_complexity Low_complexity 2 70 0 5 1199 264 100 0 0 chr5 80503122 80503162 -72034097 + (CATG)n Simple_repeat Simple_repeat 1 40 0 6 1199 28 71 0 0 chr5 80503181 80503237 -72034022 + AT_rich Low_complexity Low_complexity 1 56 0 7 1199 1114 218 16 75 chr5 80503659 80503981 -72033278 - RMER1C Other Other 0 1342 1040 8 1199 413 302 152 20 chr5 80504168 80504418 -72032841 - Lx8 LINE L1 -30 7443 7161 9 1199 198 136 0 0 chr5 80504616 80504660 -72032599 + (T)n Simple_repeat Simple_repeat 1 44 0 1 1199 1035 353 57 28 chr5 80504830 80505686 -72031573 - Lx8 LINE L1 -587 7109 6225 9 1199 267 103 0 0 chr5 80507194 80507233 -72030026 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1199 851 258 21 156 chr5 80507673 80508013 -72029246 - Lx9 LINE L1 -998 6646 6353 1 1199 225 0 0 0 chr5 80508014 80508039 -72029220 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1199 198 0 0 0 chr5 80508040 80508062 -72029197 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1 1199 814 226 172 39 chr5 80508377 80508732 -72028527 - Lx9 LINE L1 0 5847 5446 1 1199 449 250 53 53 chr5 80508737 80508906 -72028353 + Lx9 LINE L1 6646 6814 -830 1 1199 728 378 53 13 chr5 80510251 80510439 -72026820 - Lx9 LINE L1 -733 6911 6714 1 1199 272 48 0 23 chr5 80510439 80510482 -72026777 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1199 728 333 89 54 chr5 80510482 80511342 -72025917 - Lx9 LINE L1 -931 6713 5675 1 1199 384 392 98 33 chr5 80512506 80512819 -72024440 - Lx8 LINE L1 -142 7331 7008 1 1199 2231 117 9 12 chr5 80512819 80513147 -72024112 + ORR1A2 LTR MaLR 1 327 0 1 1199 384 392 98 33 chr5 80513147 80513496 -72023763 - Lx8 LINE L1 -466 7007 6626 1 1199 29880 146 64 29 chr5 80513560 80515775 -72021484 + Lx3_Mus LINE L1 212 2512 -3374 2 1199 1167 55 7 0 chr5 80515775 80515921 -72021338 + B1_Mus1 SINE Alu 2 148 0 2 1199 29880 104 21 19 chr5 80515921 80519900 -72017359 + Lx3_Mus LINE L1 2513 6511 -498 2 1199 812 296 121 37 chr5 80520182 80520548 -72016711 - MTD LTR MaLR 0 400 14 2 1199 477 238 52 85 chr5 80520643 80520914 -72016345 + Lx9 LINE L1 7377 7638 -6 2 1199 23 68 0 0 chr5 80521222 80521266 -72015993 + AT_rich Low_complexity Low_complexity 1 44 0 2 1199 24 32 0 0 chr5 80521886 80521917 -72015342 + AT_rich Low_complexity Low_complexity 1 31 0 2 1199 562 302 118 79 chr5 80522230 80522921 -72014338 - MTC-int LTR MaLR -118 1140 323 2 1199 441 245 0 11 chr5 80523385 80523480 -72013779 - MTC-int LTR MaLR -922 336 243 2 1199 234 193 44 33 chr5 80523653 80523744 -72013515 + Lx6 LINE L1 7343 7434 -26 2 1199 345 289 0 11 chr5 80523896 80523987 -72013272 - RSINE1 SINE B4 -46 119 30 2 1199 483 18 0 0 chr5 80524327 80524383 -72012876 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1199 213 140 0 57 chr5 80525132 80525185 -72012074 + A-rich Low_complexity Low_complexity 5 54 0 3 1199 53 0 0 0 chr5 80525365 80525418 -72011841 + AT_rich Low_complexity Low_complexity 1 53 0 3 1199 731 319 41 22 chr5 80525488 80525805 -72011454 - MLT1A0 LTR MaLR 0 365 43 3 1199 25 0 0 0 chr5 80525829 80525854 -72011405 + AT_rich Low_complexity Low_complexity 1 25 0 3 1199 234 0 0 0 chr5 80526176 80526202 -72011057 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1199 705 157 0 0 chr5 80526202 80526374 -72010885 + GA-rich Low_complexity Low_complexity 1 172 0 3 1199 390 271 107 52 chr5 80526845 80527053 -72010206 - ORR1C2 LTR MaLR -128 256 9 3 1199 709 113 23 23 chr5 80527197 80527369 -72009890 + (TA)n Simple_repeat Simple_repeat 2 173 0 3 1199 21 0 0 0 chr5 80527853 80527874 -72009385 + AT_rich Low_complexity Low_complexity 1 21 0 3 1199 518 264 0 0 chr5 80527933 80528039 -72009220 + U6 snRNA snRNA 2 107 0 3 1199 252 137 0 73 chr5 80528080 80528135 -72009124 + L1_Mur2 LINE L1 2954 3004 -2873 4 1199 457 377 48 13 chr5 80528507 80528821 -72008438 - Lx8 LINE L1 -289 7184 6860 4 1199 1853 118 25 62 chr5 80528880 80529233 -72008026 + Lx LINE L1 6308 6647 -7 4 1199 672 189 8 32 chr5 80529254 80529380 -72007879 - RLTR20C LTR ERVK -409 125 3 4 1199 569 317 77 32 chr5 80529399 80529712 -72007547 - Lx8 LINE L1 -749 6724 6398 4 1199 22 70 0 0 chr5 80529821 80529864 -72007395 + AT_rich Low_complexity Low_complexity 1 43 0 4 1199 381 325 24 43 chr5 80530037 80530201 -72007058 + RSINE1 SINE B4 4 164 -1 4 1199 455 336 56 91 chr5 80530979 80531231 -72006028 + B4A SINE B4 42 284 -8 4 1199 35522 70 12 2 chr5 80531340 80537761 -71999498 - L1Md_F2 LINE L1 -1 6581 100 4 1199 257 277 18 9 chr5 80537784 80537897 -71999362 - L1VL1 LINE L1 -6125 297 184 4 1199 26 0 0 0 chr5 80538328 80538354 -71998905 + AT_rich Low_complexity Low_complexity 1 26 0 4 1199 540 68 0 0 chr5 80538422 80538495 -71998764 - L1_Mm LINE L1 -4015 1868 1796 5 1199 18610 22 0 0 chr5 80538488 80540668 -71996591 + L1Md_T LINE L1 3407 5586 -297 5 1199 8480 27 0 0 chr5 80540668 80541664 -71995595 + L1Md_T LINE L1 5587 6582 0 5 1199 195 139 0 0 chr5 80542075 80542111 -71995148 + (TTG)n Simple_repeat Simple_repeat 1 36 0 5 1199 231 36 0 0 chr5 80542430 80542458 -71994801 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1199 37 69 0 0 chr5 80542906 80542978 -71994281 + AT_rich Low_complexity Low_complexity 1 72 0 5 1199 219 167 0 20 chr5 80543006 80543055 -71994204 + CT-rich Low_complexity Low_complexity 1 48 0 5 1199 2169 124 73 8 chr5 80543243 80543601 -71993658 + Lx3A LINE L1 6594 6974 -7 5 1199 261 248 155 0 chr5 80543662 80543791 -71993468 + L1M2 LINE L1 5595 5743 -548 5 1199 308 338 35 21 chr5 80543798 80543940 -71993319 + ORR1D1 LTR MaLR 231 374 0 5 1199 361 205 0 20 chr5 80544113 80544195 -71993064 + ORR1D1 LTR MaLR 310 384 0 5 1199 847 350 81 33 chr5 80544211 80544782 -71992477 - Lx8 LINE L1 -163 7310 6713 6 1199 5724 134 13 18 chr5 80544816 80545758 -71991501 - Lx2 LINE L1 -143 6854 5918 6 1199 495 259 37 31 chr5 80545757 80545920 -71991339 - Lx9 LINE L1 -526 7118 6955 6 1199 1391 309 28 26 chr5 80546052 80546560 -71990699 - RLTR11A2 LTR ERVK -14 513 5 6 1199 269 272 25 0 chr5 80546635 80546716 -71990543 + (TCTG)n Simple_repeat Simple_repeat 4 86 0 6 1199 274 247 55 0 chr5 80546721 80546794 -71990465 - Lx9 LINE L1 -191 7453 7377 6 1199 769 289 41 72 chr5 80546906 80547268 -71989991 + RLTR40 LTR ERVK 457 807 -10 6 1199 22 0 0 0 chr5 80547338 80547360 -71989899 + AT_rich Low_complexity Low_complexity 1 22 0 6 1199 829 171 0 23 chr5 80547616 80547790 -71989469 - Lx2A1 LINE L1 -3 7005 6836 6 1199 960 288 43 7 chr5 80547793 80548097 -71989162 + Lx6 LINE L1 7144 7458 -2 6 1199 1142 61 0 7 chr5 80549549 80549697 -71987562 - B1_Mus2 SINE Alu 0 147 1 7 1199 180 0 0 0 chr5 80550113 80550133 -71987126 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1199 310 329 34 26 chr5 80550690 80550848 -71986411 + ORR1E LTR MaLR 26 179 -191 7 1199 210 143 0 0 chr5 80551309 80551344 -71985915 + (TC)n Simple_repeat Simple_repeat 1 35 0 7 1199 993 46 0 0 chr5 80551383 80551514 -71985745 + (GA)n Simple_repeat Simple_repeat 2 132 0 7 1199 398 254 16 33 chr5 80552304 80552426 -71984833 - Lx7 LINE L1 -18 7678 7559 7 1199 28 0 0 0 chr5 80552436 80552464 -71984795 + AT_rich Low_complexity Low_complexity 1 28 0 7 1199 342 0 0 0 chr5 80552498 80552536 -71984723 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 1199 204 125 0 0 chr5 80552883 80552915 -71984344 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1199 1143 74 0 0 chr5 80553475 80553623 -71983636 - B1_Mus1 SINE Alu 0 148 1 7 1199 27 0 0 0 chr5 80554549 80554576 -71982683 + AT_rich Low_complexity Low_complexity 1 27 0 8 1199 741 349 63 74 chr5 80554740 80554982 -71982277 + Lx7 LINE L1 6428 6647 -826 8 1199 189 0 0 0 chr5 80554982 80555003 -71982256 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 8 1199 1270 335 33 12 chr5 80555003 80555527 -71981732 + Lx7 LINE L1 6648 7178 -295 8 1199 1380 243 93 4 chr5 80556347 80556750 -71980509 + Lx2B LINE L1 6531 6991 -6 8 1199 494 323 82 21 chr5 80556794 80557085 -71980174 + L1MC LINE L1 3543 3851 -2295 8 1199 308 270 17 189 chr5 80557503 80557552 -71979707 + B2_Mm2 SINE B2 1 51 -144 8 1199 231 36 0 0 chr5 80557552 80557580 -71979679 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 1199 308 270 17 189 chr5 80557580 80557763 -71979496 + B2_Mm2 SINE B2 52 193 -2 8 1199 29 0 0 0 chr5 80558923 80558952 -71978307 + AT_rich Low_complexity Low_complexity 1 29 0 8 1199 1106 300 20 7 chr5 80559687 80559992 -71977267 + ORR1D2 LTR MaLR 11 319 -51 8 1199 712 260 45 1 chr5 80560806 80561020 -71976239 + L1M4 LINE L1 5387 5613 -576 8 1199 351 0 0 0 chr5 80561112 80561151 -71976108 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1199 1222 157 39 9 chr5 80561151 80561383 -71975876 - Lx3A LINE L1 -13 6968 6730 9 1199 680 295 45 33 chr5 80561383 80561556 -71975703 - MTD LTR MaLR 0 419 243 9 1199 1698 198 235 14 chr5 80561556 80562121 -71975138 + RMER6C LTR ERVK 1 690 0 9 1199 680 295 45 33 chr5 80562121 80562189 -71975070 - MTD LTR MaLR -177 242 175 9 1199 525 305 40 128 chr5 80562294 80562692 -71974567 - RMER20B LTR ERVK -31 596 234 9 1199 2392 93 11 20 chr5 80563009 80563359 -71973900 - L1_Mus2 LINE L1 0 6566 6220 9 1199 5189 87 1 8 chr5 80563358 80564088 -71973171 + L1_Mus1 LINE L1 5843 6567 0 9 1199 23 68 0 0 chr5 80564146 80564190 -71973069 + AT_rich Low_complexity Low_complexity 1 44 0 9 1199 441 0 0 0 chr5 80567311 80567360 -71969899 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1199 210 171 0 0 chr5 80567362 80567403 -71969856 + GA-rich Low_complexity Low_complexity 2 42 0 9 1199 253 287 102 0 chr5 80567485 80567593 -71969666 + Lx6 LINE L1 7331 7449 -11 1 1199 205 359 13 0 chr5 80568540 80568618 -71968641 + L2c LINE L2 3272 3350 -37 1 1199 384 136 22 11 chr5 80568912 80569001 -71968258 + (TA)n Simple_repeat Simple_repeat 2 91 0 1 1199 496 205 82 24 chr5 80569225 80569395 -71967864 + Lx9 LINE L1 7464 7643 -1 1 1199 26 0 0 0 chr5 80569395 80569421 -71967838 + AT_rich Low_complexity Low_complexity 1 26 0 1 1199 444 176 0 21 chr5 80570109 80570202 -71967057 - L1_Mm LINE L1 -1523 4360 4270 1 1199 463 135 0 135 chr5 80570203 80570314 -71966945 - MusHAL1 LINE L1 -505 2207 2112 1 1199 7936 146 21 3 chr5 80570312 80572527 -71964732 + L1_Mus4 LINE L1 4365 6628 -8 1 1199 187 313 56 78 chr5 80572671 80572851 -71964408 + L3b LINE CR1 194 369 -113 1 1199 473 47 16 0 chr5 80573568 80573632 -71963627 + (TTTA)n Simple_repeat Simple_repeat 4 68 0 1 1199 342 360 0 0 chr5 80574324 80574410 -71962849 - RSINE1 SINE B4 -36 129 44 1 1199 201 330 80 35 chr5 80574472 80574585 -71962674 + MIRc SINE MIR 43 160 -108 1 1199 507 310 129 11 chr5 80574800 80574986 -71962273 - Lx8 LINE L1 -131 7342 7135 1 1199 1118 256 10 75 chr5 80575360 80575758 -71961501 - ORR1D1 LTR MaLR 0 374 3 1 1199 294 308 9 18 chr5 80575774 80575883 -71961376 + (TATG)n Simple_repeat Simple_repeat 1 108 0 1 1199 527 320 81 14 chr5 80575947 80576156 -71961103 - B4A SINE B4 -69 223 1 1 1199 275 130 19 0 chr5 80577157 80577211 -71960048 + (TTCA)n Simple_repeat Simple_repeat 3 57 0 1 1199 10586 189 35 54 chr5 80581695 80582940 -71954319 + L1_Mur2 LINE L1 898 2105 -3772 1 1199 186 43 0 0 chr5 80582940 80582963 -71954296 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1199 10586 188 35 71 chr5 80582963 80584053 -71953206 + L1_Mur2 LINE L1 2106 3224 -2653 1 1199 621 0 0 0 chr5 80584053 80584122 -71953137 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1199 10586 188 35 71 chr5 80584122 80584885 -71952374 + L1_Mur2 LINE L1 3225 3910 -1967 1 1199 406 353 53 14 chr5 80584931 80585138 -71952121 - B3 SINE B2 -1 215 1 1 1199 22 0 0 0 chr5 80585147 80585169 -71952090 + AT_rich Low_complexity Low_complexity 1 22 0 1 1199 21 0 0 0 chr5 80585787 80585808 -71951451 + AT_rich Low_complexity Low_complexity 1 21 0 1 1199 2680 202 30 16 chr5 80586362 80586931 -71950328 + Lx2 LINE L1 5800 6376 -621 1 1199 1049 190 0 0 chr5 80586927 80587106 -71950153 + Lx2B LINE L1 6438 6616 -384 1 1199 899 201 10 5 chr5 80587106 80587306 -71949953 + Lx2 LINE L1 6797 6997 0 1 1199 326 374 43 27 chr5 80587306 80587493 -71949766 + MTE-int LTR MaLR 65 254 -1326 1 1199 236 380 78 0 chr5 80587827 80587969 -71949290 + MTE-int LTR MaLR 766 918 -662 1 1199 261 119 0 0 chr5 80588273 80588315 -71948944 + (ATG)n Simple_repeat Simple_repeat 2 43 0 1 1199 335 345 92 8 chr5 80588315 80588435 -71948824 - B1_Mur1 SINE Alu -10 139 10 1 1199 522 299 82 165 chr5 80589352 80589765 -71947494 + MTD LTR MaLR 1 405 -14 1 1199 405 0 0 0 chr5 80590746 80590791 -71946468 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1199 386 297 50 0 chr5 80590798 80590899 -71946360 - RSINE1 SINE B4 -32 133 28 1 1199 521 337 71 25 chr5 80591065 80591263 -71945996 - ID_B1 SINE B4 -8 216 10 1 1199 298 353 69 35 chr5 80591305 80591478 -71945781 + MLT1E1 LTR MaLR 472 650 -4 1 1199 455 222 8 60 chr5 80592389 80592523 -71944736 + Lx9 LINE L1 6870 6996 -648 1 1199 897 181 166 0 chr5 80592508 80592713 -71944546 - Lx4A LINE L1 -816 5061 4823 1 1199 5154 208 23 42 chr5 80592716 80594584 -71942675 + Lx4A LINE L1 5118 7000 0 1 1199 715 226 312 16 chr5 80594580 80594948 -71942311 + Lx9 LINE L1 6985 7461 -183 1 1199 492 32 0 0 chr5 80594948 80595010 -71942249 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1199 298 385 37 31 chr5 80595027 80595188 -71942071 - MLT1H LTR MaLR -347 202 41 1 1199 477 50 0 0 chr5 80596032 80596092 -71941167 + (ATAAG)n Simple_repeat Simple_repeat 3 62 0 1 1199 4434 109 9 5 chr5 80597153 80597809 -71939450 - Lx LINE L1 0 6654 5996 1 1199 217 0 61 0 chr5 80598897 80598930 -71938329 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1199 209 100 50 0 chr5 80599170 80599210 -71938049 + (TATG)n Simple_repeat Simple_repeat 2 43 0 1 1199 372 333 85 78 chr5 80599456 80599775 -71937484 + ORR1E LTR MaLR 11 331 -28 1 1199 49 32 0 0 chr5 80599778 80599841 -71937418 + AT_rich Low_complexity Low_complexity 1 63 0 1 1199 22320 55 10 2 chr5 80600548 80604199 -71933060 - L1Md_F3 LINE L1 -2 6582 2904 1 1199 707 326 42 9 chr5 80604835 80605169 -71932090 - Lx7 LINE L1 -637 7059 6715 1 1199 718 276 75 13 chr5 80605190 80605418 -71931841 - Lx7 LINE L1 -1179 6517 6276 1 1199 1118 202 92 3 chr5 80605670 80605963 -71931296 + L1_Mur2 LINE L1 874 1192 -5894 1 1199 278 137 0 0 chr5 80605970 80606021 -71931238 + L1_Mur2 LINE L1 1454 1504 -4373 1 1199 1022 164 5 18 chr5 80606021 80606239 -71931020 + Lx3C LINE L1 6760 6974 -2 1 1199 186 133 0 0 chr5 80606240 80606270 -71930989 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1 1199 1067 126 0 37 chr5 80606327 80606516 -71930743 + L1_Mur2 LINE L1 1522 1703 -4174 1 1199 1086 140 34 0 chr5 80606516 80606695 -71930564 + B2_Mm2 SINE B2 8 192 -3 1 1199 1374 188 75 7 chr5 80606695 80607000 -71930259 + L1_Mur2 LINE L1 1724 2049 -3828 1 1199 22 94 0 0 chr5 80607372 80607436 -71929823 + AT_rich Low_complexity Low_complexity 1 64 0 1 1199 22 0 0 0 chr5 80608352 80608374 -71928885 + AT_rich Low_complexity Low_complexity 1 22 0 1 1199 318 269 127 30 chr5 80608774 80608908 -71928351 - B1_Mur2 SINE Alu -1 148 2 1 149 264 59 0 0 chr5 80609278 80609312 -71927947 + (GAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1200 24 67 0 0 chr5 80609963 80610008 -71927251 + AT_rich Low_complexity Low_complexity 1 45 0 1 1200 435 83 0 0 chr5 80610112 80610172 -71927087 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 1200 338 286 10 20 chr5 80610172 80610272 -71926987 - HAL1-3A_ME LINE L1 -846 2012 1914 1 1200 2513 260 44 39 chr5 80611127 80611827 -71925432 - RMER1B Other Other -17 1049 346 1 1200 21 36 0 0 chr5 80612190 80612218 -71925041 + AT_rich Low_complexity Low_complexity 1 28 0 1 1200 309 330 46 11 chr5 80612256 80612431 -71924828 - Lx8 LINE L1 -118 7355 7175 1 1200 795 161 0 0 chr5 80612514 80612694 -71924565 + CT-rich Low_complexity Low_complexity 1 180 0 1 1200 378 0 0 0 chr5 80612703 80612745 -71924514 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1200 273 282 104 28 chr5 80612749 80612855 -71924404 - RSINE1 SINE B4 -38 127 14 1 1200 1878 161 50 116 chr5 80613491 80613816 -71923443 + ORR1B1 LTR MaLR 1 337 -57 1 1200 998 120 0 23 chr5 80613816 80613987 -71923272 + L1_Mus2 LINE L1 6400 6566 0 1 1200 1878 161 50 116 chr5 80613987 80614083 -71923176 + ORR1B1 LTR MaLR 338 394 0 1 1200 24 32 0 0 chr5 80614701 80614732 -71922527 + AT_rich Low_complexity Low_complexity 1 31 0 1 1200 23 68 0 0 chr5 80615120 80615164 -71922095 + AT_rich Low_complexity Low_complexity 1 44 0 1 1200 23 33 0 0 chr5 80615507 80615537 -71921722 + AT_rich Low_complexity Low_complexity 1 30 0 1 1200 1282 227 40 48 chr5 80616401 80616855 -71920404 + L1_Rod LINE L1 3099 3548 -2299 1 1200 333 0 0 0 chr5 80616870 80616907 -71920352 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1 1200 1785 74 21 0 chr5 80616910 80617152 -71920107 - L1_Mus1 LINE L1 -1 6566 6320 1 1200 3423 77 19 4 chr5 80617154 80617673 -71919586 + L1_Mus1 LINE L1 5369 5895 -672 1 1200 709 230 58 14 chr5 80617689 80617911 -71919348 + Lx4B LINE L1 6750 7050 -8 1 1200 760 257 175 43 chr5 80618052 80618570 -71918689 + L1_Rod LINE L1 5258 5786 -61 1 1200 518 222 54 0 chr5 80618643 80618810 -71918449 + Lx9 LINE L1 7469 7644 0 1 1200 634 78 10 10 chr5 80619234 80619337 -71917922 + (TTTC)n Simple_repeat Simple_repeat 4 106 0 1 1200 251 178 0 19 chr5 80619330 80619435 -71917824 + CT-rich Low_complexity Low_complexity 1 102 0 1 1200 315 0 0 0 chr5 80619435 80619470 -71917789 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1200 3328 86 11 9 chr5 80619567 80620034 -71917225 + MT2C_Mm LTR ERVL 8 475 0 1 1200 378 327 99 34 chr5 80620044 80620307 -71916952 + MER2 DNA MER2_type 18 297 -48 1 1200 2367 194 168 67 chr5 80620309 80620977 -71916282 - RMER19A LTR ERVK -2 735 1 1 1200 195 42 0 0 chr5 80621409 80621433 -71915826 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1200 225 0 0 0 chr5 80623314 80623339 -71913920 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1200 875 277 14 5 chr5 80623881 80624088 -71913171 + B3 SINE B2 6 214 -2 1 1200 443 182 8 0 chr5 80624107 80624233 -71913026 + (TG)n Simple_repeat Simple_repeat 1 127 0 1 1200 341 187 13 0 chr5 80625084 80625159 -71912100 + MER57D LTR ERV1 336 411 0 1 1200 225 119 0 0 chr5 80625302 80625344 -71911915 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1 1200 420 104 0 15 chr5 80625344 80625412 -71911847 + L1_Mur1 LINE L1 4718 4784 -1102 1 1200 5761 145 14 8 chr5 80625410 80626356 -71910903 - Lx2 LINE L1 -39 6958 6008 1 1200 1738 251 5 41 chr5 80626781 80627196 -71910063 + Lx5 LINE L1 6644 7043 -7 1 1200 300 188 0 0 chr5 80628183 80628252 -71909007 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1200 336 102 0 0 chr5 80629276 80629325 -71907934 + (CCA)n Simple_repeat Simple_repeat 1 49 0 1 1200 22 35 0 0 chr5 80630040 80630069 -71907190 + AT_rich Low_complexity Low_complexity 1 29 0 1 1200 720 268 55 61 chr5 80630084 80630446 -71906813 - Lx7 LINE L1 0 7696 7337 1 1200 550 239 69 46 chr5 80630445 80630620 -71906639 - Lx7 LINE L1 -1681 6015 5837 1 1200 278 348 73 7 chr5 80631204 80631340 -71905919 + B4 SINE B4 28 172 -120 1 1200 259 297 47 56 chr5 80631262 80631369 -71905890 + PB1D9 SINE Alu 6 111 -9 1 1200 205 312 0 12 chr5 80631424 80631505 -71905754 + (CATA)n Simple_repeat Simple_repeat 3 82 0 1 1200 304 358 128 17 chr5 80632661 80632959 -71904300 - Tigger7 DNA MER2_type -2139 352 22 1 1200 3308 212 60 50 chr5 80633021 80633058 -71904201 - Lx7 LINE L1 -6384 1344 1312 1 1200 3815 136 7 10 chr5 80633058 80633659 -71903600 - MT2B LTR ERVL 0 601 3 1 1200 3308 212 60 50 chr5 80633659 80634525 -71902734 - Lx7 LINE L1 -6417 1311 432 1 1200 357 276 57 50 chr5 80634674 80634815 -71902444 - L1M2 LINE L1 -2952 3191 3050 1 1200 386 296 93 32 chr5 80634862 80634944 -71902315 - L1_Rod LINE L1 -2806 3041 2944 1 1200 241 19 17 86 chr5 80634944 80635002 -71902257 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 2 1200 386 296 93 32 chr5 80635002 80635264 -71901995 - L1_Rod LINE L1 -2904 2943 2677 1 1200 526 165 67 19 chr5 80635274 80635379 -71901880 + RMER6B LTR ERVK 3 112 -349 2 1200 1385 179 282 3 chr5 80635379 80635737 -71901522 + RMER6B LTR ERVK 1 458 -3 2 1200 6182 135 36 24 chr5 80635916 80637019 -71900240 - Lx LINE L1 -9 6645 5531 2 1200 229 94 0 0 chr5 80637417 80637449 -71899810 - L1_Mus1 LINE L1 -298 6269 6238 2 1200 2776 50 81 13 chr5 80637450 80637834 -71899425 + L1Md_F3 LINE L1 6175 6584 0 2 1200 530 269 151 23 chr5 80637840 80638098 -71899161 + ORR1D-int LTR MaLR 504 794 -576 2 1200 21 0 0 0 chr5 80638103 80638124 -71899135 + AT_rich Low_complexity Low_complexity 1 21 0 2 1200 7531 143 50 18 chr5 80638133 80639631 -71897628 - Lx3B LINE L1 -4 6969 5452 2 1200 1927 111 0 0 chr5 80639632 80639911 -71897348 + Lx3B LINE L1 5174 5452 -434 2 1200 1848 291 31 24 chr5 80639916 80640236 -71897023 + ORR1D-int LTR MaLR 790 1109 -261 2 1200 986 50 43 0 chr5 80640236 80640375 -71896884 + L1Md_A LINE L1 6437 6581 -1 2 1200 1848 291 31 24 chr5 80640375 80640631 -71896628 + ORR1D-int LTR MaLR 1110 1370 0 2 1200 6693 98 5 8 chr5 80640656 80641629 -71895630 - L1_Mus4 LINE L1 -139 6497 5528 2 1200 336 64 0 0 chr5 80644815 80644862 -71892397 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 1200 365 330 50 0 chr5 80645037 80645178 -71892081 + MLT2B4 LTR ERVL 1 150 -404 2 1200 1544 206 69 11 chr5 80645498 80645847 -71891412 - ORR1D1 LTR MaLR -3 371 3 2 1200 3811 92 23 31 chr5 80645858 80646430 -71890829 + RMER2 LTR ERV1 1 567 0 2 1200 405 0 0 0 chr5 80647311 80647356 -71889903 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1200 384 329 57 7 chr5 80647386 80647527 -71889732 + MLT1A0 LTR MaLR 218 365 0 2 1200 412 304 107 14 chr5 80647599 80647739 -71889520 + B3 SINE B2 44 196 -20 2 1200 21 0 0 0 chr5 80648250 80648271 -71888988 + AT_rich Low_complexity Low_complexity 1 21 0 2 1200 394 303 31 55 chr5 80648400 80648563 -71888696 + B3A SINE B2 58 216 0 2 1200 324 0 0 0 chr5 80648683 80648719 -71888540 + (T)n Simple_repeat Simple_repeat 1 36 0 2 1200 216 0 0 0 chr5 80649886 80649910 -71887349 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2 1200 2874 191 30 27 chr5 80649914 80650516 -71886743 - Lx2B LINE L1 -11 6989 6386 2 1200 394 75 15 15 chr5 80650839 80650907 -71886352 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1200 331 358 78 83 chr5 80650907 80651087 -71886172 - B3 SINE B2 -11 205 27 2 1200 280 103 0 0 chr5 80651109 80651148 -71886111 - L1_Mm LINE L1 -287 5596 5558 2 1200 29 78 0 0 chr5 80651548 80651612 -71885647 + AT_rich Low_complexity Low_complexity 1 64 0 2 1200 26 30 0 0 chr5 80652131 80652164 -71885095 + AT_rich Low_complexity Low_complexity 1 33 0 2 1200 753 201 6 17 chr5 80652753 80652925 -71884334 + Lx7 LINE L1 5725 5894 -1802 2 1200 24 53 0 0 chr5 80653082 80653120 -71884139 + AT_rich Low_complexity Low_complexity 1 38 0 2 1200 321 200 0 0 chr5 80653519 80653579 -71883680 + L1Md_F LINE L1 473 532 -5987 2 1200 11255 103 24 9 chr5 80653576 80656054 -71881205 + L1Md_F LINE L1 306 2822 -3061 2 1200 1251 89 10 5 chr5 80656055 80656248 -71881011 + L1Md_F LINE L1 3516 3709 -2174 2 1200 7636 37 12 1 chr5 80656240 80657252 -71880007 - L1Md_F3 LINE L1 -72 6512 5491 2 1200 3312 106 4 1 chr5 80657248 80657829 -71879430 - L1Md_F LINE L1 -5534 1190 632 2 1200 30 45 0 0 chr5 80658030 80658074 -71879185 + AT_rich Low_complexity Low_complexity 1 44 0 2 1200 234 0 0 0 chr5 80658791 80658817 -71878442 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 1200 710 149 200 11 chr5 80659712 80659902 -71877357 - URR1A DNA MER1_type 0 226 1 2 1200 1384 146 11 8 chr5 80659929 80660192 -71877067 - L1_Mur2 LINE L1 -3215 2662 2399 2 1200 21 57 0 0 chr5 80660368 80660403 -71876856 + AT_rich Low_complexity Low_complexity 1 35 0 2 1200 21 0 0 0 chr5 80660491 80660512 -71876747 + AT_rich Low_complexity Low_complexity 1 21 0 2 1200 3803 172 105 19 chr5 80660583 80661430 -71875829 - L1_Mus2 LINE L1 -6 6560 5641 2 1200 23 33 0 0 chr5 80662312 80662342 -71874917 + AT_rich Low_complexity Low_complexity 1 30 0 2 1200 535 291 191 13 chr5 80662486 80662716 -71874543 - MTEb LTR MaLR -3 376 106 2 1200 1052 86 0 0 chr5 80662868 80663008 -71874251 - B1_Mus2 SINE Alu -7 140 1 2 1200 26 0 0 0 chr5 80663450 80663476 -71873783 + AT_rich Low_complexity Low_complexity 1 26 0 2 1200 207 254 0 0 chr5 80664144 80664199 -71873060 + (CATA)n Simple_repeat Simple_repeat 1 55 0 2 1200 303 28 0 0 chr5 80664388 80664424 -71872835 + (TA)n Simple_repeat Simple_repeat 1 36 0 2 1200 392 340 74 10 chr5 80664892 80665094 -71872165 - MER20 DNA MER1_type -4 215 1 2 1200 8329 135 38 8 chr5 80665535 80666568 -71870691 - Lx3A LINE L1 0 6981 5907 2 1200 180 0 0 0 chr5 80666568 80666588 -71870671 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1200 8329 113 25 36 chr5 80666588 80667437 -71869822 - Lx3A LINE L1 -1075 5906 5072 2 1200 270 0 0 0 chr5 80667864 80667894 -71869365 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1200 2611 132 60 0 chr5 80667928 80668359 -71868900 - Lx2 LINE L1 0 6997 6541 2 1200 22 56 0 0 chr5 80669022 80669058 -71868201 + AT_rich Low_complexity Low_complexity 1 36 0 2 1200 22 35 0 0 chr5 80669559 80669588 -71867671 + AT_rich Low_complexity Low_complexity 1 29 0 2 1200 1821 35 0 21 chr5 80671246 80671481 -71865778 - L1Md_F2 LINE L1 0 6582 6353 2 1200 2520 87 6 0 chr5 80671973 80672305 -71864954 - Lx3_Mus LINE L1 -455 6554 6221 2 1200 3050 107 39 0 chr5 80672306 80672765 -71864494 + Lx3_Mus LINE L1 6533 7009 0 2 1200 554 214 35 9 chr5 80673712 80673825 -71863434 - B1_Mus2 SINE Alu -4 143 28 2 1200 211 71 48 0 chr5 80673919 80673961 -71863298 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 2 1200 314 264 53 30 chr5 80674028 80674161 -71863098 - L1MA6 LINE L1 -345 5955 5820 2 1200 266 292 133 16 chr5 80674196 80674384 -71862875 - L1M2 LINE L1 -447 5853 5644 2 1200 309 57 0 0 chr5 80674551 80674604 -71862655 - L1_Mus4 LINE L1 0 6636 6584 2 1200 192 125 0 0 chr5 80675257 80675289 -71861970 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2 1200 2140 254 18 16 chr5 80675327 80675834 -71861425 - Lx6 LINE L1 -205 7255 6748 2 1200 572 215 83 15 chr5 80675835 80675967 -71861292 - B1_Mus1 SINE Alu -2 146 6 2 1200 477 0 0 0 chr5 80675975 80676028 -71861231 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1200 1557 198 10 13 chr5 80676034 80676341 -71860918 - RMER6C LTR ERVK -384 306 1 2 1200 189 175 0 0 chr5 80676567 80676607 -71860652 + GA-rich Low_complexity Low_complexity 3 42 0 2 1200 21 0 0 0 chr5 80676904 80676925 -71860334 + AT_rich Low_complexity Low_complexity 1 21 0 2 1200 620 195 24 0 chr5 80678137 80678301 -71858958 + (TA)n Simple_repeat Simple_repeat 1 168 0 2 1200 23 54 0 0 chr5 80680099 80680136 -71857123 + AT_rich Low_complexity Low_complexity 1 37 0 2 1200 22 0 0 0 chr5 80680236 80680258 -71857001 + AT_rich Low_complexity Low_complexity 1 22 0 2 1200 367 331 37 43 chr5 80680408 80680572 -71856687 + RSINE1 SINE B4 3 165 0 2 1200 212 86 0 28 chr5 80681016 80681052 -71856207 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 2 1200 3684 169 20 20 chr5 80681419 80682233 -71855026 - L1Md_F LINE L1 -5669 1055 238 2 1200 4061 79 11 4 chr5 80682236 80682769 -71854490 + L1Md_F2 LINE L1 6032 6568 -14 2 1200 402 21 0 0 chr5 80682769 80682816 -71854443 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2 1200 4061 79 11 4 chr5 80682816 80682829 -71854430 + L1Md_F2 LINE L1 6569 6581 -1 2 1200 30 27 0 0 chr5 80682978 80683015 -71854244 + AT_rich Low_complexity Low_complexity 1 37 0 2 1200 23 54 0 0 chr5 80685002 80685039 -71852220 + AT_rich Low_complexity Low_complexity 1 37 0 2 1200 200 283 28 28 chr5 80685489 80685598 -71851661 + (TCTA)n Simple_repeat Simple_repeat 1 109 0 2 1200 217 176 20 0 chr5 80686486 80686537 -71850722 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2 1200 7651 163 20 21 chr5 80686541 80687916 -71849343 - Lx4A LINE L1 0 7058 5696 2 1200 2325 179 57 28 chr5 80688910 80689381 -71847878 - Lx2 LINE L1 0 6997 6513 2 1200 2345 127 50 25 chr5 80690087 80690484 -71846775 + MTB_Mm LTR MaLR 1 407 0 2 1200 1755 154 83 14 chr5 80691188 80691551 -71845708 - Lx4A LINE L1 -411 5466 5079 2 1200 3791 184 98 29 chr5 80691523 80692443 -71844816 + Lx4B LINE L1 5490 6483 -575 2 1200 852 310 75 41 chr5 80692483 80692974 -71844285 - RMER5 LTR ERV1 -12 522 15 2 1200 4816 225 37 16 chr5 80693451 80694653 -71842606 + Lx5 LINE L1 5521 6717 -333 2 1200 21 57 0 0 chr5 80694933 80694968 -71842291 + AT_rich Low_complexity Low_complexity 1 35 0 2 1200 1381 81 16 0 chr5 80695115 80695301 -71841958 + B2_Mm2 SINE B2 1 189 -6 2 1200 646 267 148 0 chr5 80696486 80696696 -71840563 - RMER1B Other Other -146 920 680 2 1200 5548 172 78 49 chr5 80696675 80697172 -71840087 - Lx4A LINE L1 -7 7051 6515 2 1200 1266 98 21 5 chr5 80697172 80697366 -71839893 + L1_Mus1 LINE L1 6370 6566 -1 2 1200 5548 172 78 49 chr5 80697366 80697889 -71839370 - Lx4A LINE L1 -544 6514 5998 2 1200 1836 161 15 58 chr5 80697889 80698231 -71839028 - ORR1A2 LTR MaLR 0 327 1 2 1200 5548 172 78 49 chr5 80698231 80698423 -71838836 - Lx4A LINE L1 -1061 5997 5803 2 1200 333 0 0 0 chr5 80699240 80699277 -71837982 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1200 21 0 0 0 chr5 80700140 80700161 -71837098 + AT_rich Low_complexity Low_complexity 1 21 0 2 1200 22 35 0 0 chr5 80700368 80700397 -71836862 + AT_rich Low_complexity Low_complexity 1 29 0 2 1200 531 276 75 0 chr5 80700622 80700796 -71836463 + Lx9 LINE L1 7236 7422 -222 2 1200 330 67 0 0 chr5 80700823 80700868 -71836391 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1200 409 190 8 55 chr5 80700869 80700997 -71836262 + Lx9 LINE L1 7522 7643 -1 2 1200 1654 39 5 0 chr5 80701907 80702112 -71835147 + L1Md_F2 LINE L1 6365 6570 -12 2 1200 411 137 0 0 chr5 80702373 80702446 -71834813 + (TTAG)n Simple_repeat Simple_repeat 1 73 0 2 1200 357 24 0 0 chr5 80702680 80702722 -71834537 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1200 308 288 0 0 chr5 80702738 80702811 -71834448 + Lx9 LINE L1 7203 7275 -369 3 1200 1138 318 47 19 chr5 80703097 80703459 -71833800 + MTEa LTR MaLR 3 374 -5 3 1200 443 369 7 13 chr5 80703619 80703770 -71833489 + RSINE1 SINE B4 2 151 -14 3 1200 319 268 130 27 chr5 80706674 80706820 -71830439 - MLT1C LTR MaLR -289 178 18 3 1200 27 29 0 0 chr5 80707437 80707471 -71829788 + AT_rich Low_complexity Low_complexity 1 34 0 3 1200 269 255 31 0 chr5 80707538 80707636 -71829623 + (TG)n Simple_repeat Simple_repeat 1 101 0 3 1200 324 0 0 0 chr5 80707701 80707737 -71829522 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1200 416 271 24 28 chr5 80707889 80708058 -71829201 - Lx9 LINE L1 -274 7370 7100 3 1200 483 273 62 6 chr5 80708284 80708461 -71828798 - L1MC3 LINE L1 -484 7301 7115 3 1200 40118 19 1 6 chr5 80708774 80715159 -71822100 - L1Md_A LINE L1 0 6582 231 3 1200 325 317 59 32 chr5 80715166 80715352 -71821907 - L1MCb LINE L1 -4850 1195 1005 3 1200 311 285 91 43 chr5 80715465 80715696 -71821563 - L1MCb LINE L1 -5138 907 666 3 1200 21 36 0 0 chr5 80716514 80716542 -71820717 + AT_rich Low_complexity Low_complexity 1 28 0 3 1200 2458 184 52 8 chr5 80717322 80717950 -71819309 + Lx3C LINE L1 6322 6999 -1 3 1200 21 57 0 0 chr5 80718053 80718088 -71819171 + AT_rich Low_complexity Low_complexity 1 35 0 3 1200 229 284 185 0 chr5 80718225 80718306 -71818953 - L1_Rod LINE L1 -636 5211 5116 3 1200 444 224 23 23 chr5 80718422 80718550 -71818709 + Lx9 LINE L1 7339 7466 -178 3 1200 245 250 13 26 chr5 80718693 80718771 -71818488 + GA-rich Low_complexity Low_complexity 3 79 0 3 1200 5185 155 58 9 chr5 80719578 80720544 -71816715 - Lx2 LINE L1 -1 6996 5984 3 1200 1003 158 16 11 chr5 80720723 80720909 -71816350 + RMER6C LTR ERVK 500 686 -4 3 1200 333 0 0 0 chr5 80720909 80720946 -71816313 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 3 1200 25 31 0 0 chr5 80721988 80722020 -71815239 + AT_rich Low_complexity Low_complexity 1 32 0 3 1200 450 259 47 73 chr5 80722850 80722873 -71814386 - B4 SINE B4 -73 219 148 3 1200 733 104 0 0 chr5 80722873 80722979 -71814280 - B1_Mus1 SINE Alu -41 107 2 3 1200 450 259 47 73 chr5 80722979 80723000 -71814259 - B4 SINE B4 -73 147 74 3 1200 1990 304 65 9 chr5 80723775 80724515 -71812744 - Lx7 LINE L1 -285 7411 6631 3 1200 30 45 0 0 chr5 80725201 80725245 -71812014 + AT_rich Low_complexity Low_complexity 1 44 0 3 1200 359 358 97 0 chr5 80725343 80725476 -71811783 - Lx7 LINE L1 -1374 6322 6186 3 1200 348 83 0 0 chr5 80725476 80725524 -71811735 + (TATG)n Simple_repeat Simple_repeat 1 48 0 3 1200 359 358 97 0 chr5 80725524 80725616 -71811643 - Lx7 LINE L1 -1511 6185 6076 3 1200 7603 39 0 0 chr5 80726634 80727578 -71809681 - L1Md_T LINE L1 -3048 2835 1892 3 1200 22364 37 2 2 chr5 80727563 80730323 -71806936 + L1Md_T LINE L1 2826 5585 -298 3 1200 8296 42 0 0 chr5 80730324 80731319 -71805940 + L1Md_T LINE L1 5587 6581 -1 3 1200 298 330 130 36 chr5 80731428 80731651 -71805608 + MLT1A0 LTR MaLR 119 362 -3 3 1200 782 249 117 4 chr5 80732497 80732727 -71804532 - RLTR22_Mur LTR ERVK 0 1848 1593 3 1200 679 97 9 9 chr5 80732927 80733042 -71804217 + (TTCC)n Simple_repeat Simple_repeat 4 118 0 3 1200 8125 140 15 15 chr5 80733044 80734115 -71803144 - Lx3A LINE L1 -7 6974 5916 3 1200 414 0 0 0 chr5 80734115 80734161 -71803098 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1200 8125 123 18 16 chr5 80734161 80734630 -71802629 - Lx3A LINE L1 -1066 5915 5444 3 1200 5829 94 7 45 chr5 80734626 80735571 -71801688 + Lx3A LINE L1 4590 5498 -388 3 1200 1521 121 169 0 chr5 80735571 80735861 -71801398 - RLTR22_Mur LTR ERVK -869 979 641 3 1200 1452 246 71 60 chr5 80735890 80736003 -71801256 + RMER12 LTR ERVK 32 133 -1189 3 1200 181 0 69 0 chr5 80736003 80736032 -71801227 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1200 4137 81 0 12 chr5 80736038 80736604 -71800655 - L1Md_F2 LINE L1 -10 6572 6014 3 1200 1452 246 71 60 chr5 80736604 80737001 -71800258 + RMER12 LTR ERVK 134 555 -767 3 1200 1116 192 0 24 chr5 80737006 80737219 -71800040 + Lx2 LINE L1 6331 6538 -459 3 1200 47 53 0 0 chr5 80737833 80737908 -71799351 + AT_rich Low_complexity Low_complexity 1 75 0 3 1200 453 90 0 0 chr5 80739002 80739069 -71798190 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1200 287 315 27 0 chr5 80739852 80739963 -71797296 - Lx8 LINE L1 -391 7082 6969 3 1200 422 349 48 31 chr5 80740030 80740323 -71796936 - Lx8 LINE L1 -292 7181 6884 3 1201 25 0 0 0 chr5 80740406 80740431 -71796828 + AT_rich Low_complexity Low_complexity 1 25 0 3 1201 2749 58 6 16 chr5 80741405 80741771 -71795488 - L1Md_F3 LINE L1 -1 6583 6222 3 1201 315 108 4 0 chr5 80741772 80741822 -71795437 - L1_Mm LINE L1 -438 5448 5375 3 1201 432 0 0 0 chr5 80741927 80741975 -71795284 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 3 1201 229 285 66 0 chr5 80742992 80743129 -71794130 + L1M5 LINE L1 5292 5437 -742 3 1201 390 336 118 44 chr5 80743277 80743759 -71793500 + L1MB8 LINE L1 5629 6146 -32 3 1201 245 339 43 11 chr5 80745250 80745438 -71791821 - L1M1 LINE L1 -430 5870 5677 3 1201 441 129 0 0 chr5 80746041 80746111 -71791148 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1201 241 247 56 131 chr5 80748525 80748632 -71788627 - MTEb LTR MaLR -280 99 1 3 1201 29 84 0 0 chr5 80749895 80749966 -71787293 + AT_rich Low_complexity Low_complexity 1 71 0 3 1201 237 146 0 0 chr5 80750048 80750096 -71787163 + (T)n Simple_repeat Simple_repeat 1 48 0 3 1201 1169 61 0 13 chr5 80750098 80750248 -71787011 - B1_Mus1 SINE Alu 0 148 1 3 1201 3406 100 6 2 chr5 80750650 80751130 -71786129 - L1_Mus1 LINE L1 0 6567 6086 3 1201 254 29 0 28 chr5 80751303 80751339 -71785920 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1201 1062 66 0 35 chr5 80751339 80751481 -71785778 - B1_Mm SINE Alu -9 138 2 3 1201 242 320 0 13 chr5 80751609 80751685 -71785574 + CT-rich Low_complexity Low_complexity 3 77 0 3 1201 253 373 83 39 chr5 80751960 80752116 -71785143 + B4 SINE B4 24 186 -106 3 1201 346 324 0 0 chr5 80752032 80752134 -71785125 + B1_Mur2 SINE Alu 14 115 -5 3 1201 2381 253 65 23 chr5 80752691 80753169 -71784090 - ORR1D-int LTR MaLR -535 974 361 3 1201 3635 67 2 25 chr5 80753169 80753659 -71783600 + L1_Mus2 LINE L1 6088 6566 0 3 1201 2381 250 67 23 chr5 80753659 80753891 -71783368 - ORR1D-int LTR MaLR -1010 360 101 3 1201 600 310 90 78 chr5 80754046 80754392 -71782867 + ORR1E LTR MaLR 5 354 -5 3 1201 324 125 0 0 chr5 80754709 80754773 -71782486 + (TCTG)n Simple_repeat Simple_repeat 3 66 0 3 1201 4396 45 2 0 chr5 80754797 80755329 -71781930 - L1Md_A LINE L1 -1 6581 6049 3 1201 252 167 0 0 chr5 80756974 80757022 -71780237 + GA-rich Low_complexity Low_complexity 2 49 0 3 1201 863 45 0 9 chr5 80757282 80757395 -71779864 + (TTCTC)n Simple_repeat Simple_repeat 4 115 0 3 1201 26 50 0 0 chr5 80757412 80757452 -71779807 + AT_rich Low_complexity Low_complexity 1 40 0 3 1201 4437 203 51 14 chr5 80757452 80758459 -71778800 - Lx3C LINE L1 -2 6974 5931 3 1201 659 267 85 0 chr5 80758476 80758641 -71778618 - B3 SINE B2 -37 179 1 3 1201 254 301 81 40 chr5 80759613 80759762 -71777497 + MTD LTR MaLR 8 162 -257 3 1201 236 331 83 23 chr5 80759897 80760030 -71777229 + MTD LTR MaLR 204 344 -15 3 1201 200 188 20 20 chr5 80760062 80760111 -71777148 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1201 321 295 57 0 chr5 80761282 80761404 -71775855 - L1M4 LINE L1 -6337 205 77 3 1201 22 0 0 0 chr5 80761426 80761448 -71775811 + AT_rich Low_complexity Low_complexity 1 22 0 3 1201 376 342 65 20 chr5 80761558 80761758 -71775501 - MLT2B1 LTR ERVL -40 527 319 3 1201 270 272 149 0 chr5 80762085 80762199 -71775060 - MLT2B1 LTR ERVL -357 199 69 3 1201 464 203 14 21 chr5 80762713 80762854 -71774405 - Lx9 LINE L1 0 7644 7505 3 1201 280 306 0 12 chr5 80762943 80763029 -71774230 + Lx9 LINE L1 5858 5942 -1702 3 1201 35119 70 4 6 chr5 80763679 80769876 -71767383 - L1Md_F3 LINE L1 -2 6582 439 3 1201 818 307 106 21 chr5 80770163 80770502 -71766757 + MTEb LTR MaLR 2 369 -10 3 1201 219 141 15 30 chr5 80770868 80770934 -71766325 + CT-rich Low_complexity Low_complexity 1 65 0 3 1201 270 0 0 0 chr5 80771063 80771093 -71766166 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1201 504 0 0 0 chr5 80771093 80771148 -71766111 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1201 317 263 69 12 chr5 80771149 80771266 -71765993 + ORR1E LTR MaLR 1 126 -244 3 1201 1165 81 0 44 chr5 80771306 80771487 -71765772 - L1_Mus1 LINE L1 -2 6565 6393 3 1201 284 167 31 10 chr5 80771721 80771818 -71765441 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 3 1201 324 0 0 0 chr5 80772221 80772257 -71765002 + (CATA)n Simple_repeat Simple_repeat 2 37 0 3 1201 306 186 37 0 chr5 80772269 80772430 -71764829 + (TCTA)n Simple_repeat Simple_repeat 4 170 0 3 1201 801 0 0 0 chr5 80772747 80772836 -71764423 + (GAA)n Simple_repeat Simple_repeat 2 90 0 3 1201 238 269 0 0 chr5 80772871 80772923 -71764336 + ID4_ SINE ID 18 69 -14 3 1201 1426 206 7 0 chr5 80774254 80774535 -71762724 - Lx LINE L1 -218 6436 6154 3 1201 3458 104 2 0 chr5 80774560 80775060 -71762199 + Lx LINE L1 5588 6088 -566 3 1201 1904 161 24 0 chr5 80775062 80775403 -71761856 + RLTR20A2 LTR ERVK 85 433 -145 3 1201 1205 68 0 6 chr5 80775403 80775559 -71761700 + L1_Mus1 LINE L1 6406 6561 -6 3 1201 270 0 0 0 chr5 80775559 80775589 -71761670 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 3 1201 276 294 18 81 chr5 80775601 80775712 -71761547 + RLTR20A2 LTR ERVK 433 536 -42 3 1201 197 65 32 0 chr5 80775712 80775743 -71761516 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1201 435 248 27 54 chr5 80775745 80775856 -71761403 + RLTR20A1 LTR ERVK 444 551 0 3 1201 468 0 0 0 chr5 80776672 80776724 -71760535 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1201 21 36 0 0 chr5 80777451 80777479 -71759780 + AT_rich Low_complexity Low_complexity 1 28 0 3 1201 274 45 45 0 chr5 80778231 80778275 -71758984 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 3 1201 1132 43 0 0 chr5 80778275 80778413 -71758846 - B1_Mus1 SINE Alu -10 138 1 3 1201 4000 152 39 20 chr5 80779407 80780118 -71757141 - Lx2 LINE L1 0 6997 6273 3 1201 2932 242 88 8 chr5 80780189 80780975 -71756284 + Lx2B LINE L1 6152 7000 0 4 1201 297 0 0 0 chr5 80781902 80781935 -71755324 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1201 335 45 45 15 chr5 80783200 80783267 -71753992 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 4 1201 1150 54 0 20 chr5 80783271 80783421 -71753838 - B1_Mm SINE Alu 0 147 1 4 1201 26 30 0 0 chr5 80786399 80786432 -71750827 + AT_rich Low_complexity Low_complexity 1 33 0 4 1201 16747 158 40 47 chr5 80786916 80791196 -71746063 + L1_Mus3 LINE L1 270 4525 -1358 4 1201 7385 107 4 1 chr5 80791196 80792459 -71744800 + L1_Mus3 LINE L1 5365 6631 -7 4 1201 2653 144 52 2 chr5 80792868 80793327 -71743932 - L1_Mur2 LINE L1 -510 5367 4886 4 1201 1479 201 59 9 chr5 80793324 80793645 -71743614 + L1_Mur2 LINE L1 5320 5656 -221 4 1201 21 71 0 0 chr5 80794210 80794252 -71743007 + AT_rich Low_complexity Low_complexity 1 42 0 4 1201 195 42 0 0 chr5 80794931 80794955 -71742304 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1201 4465 207 33 3 chr5 80795204 80796231 -71741028 - Lx4B LINE L1 -523 6535 5473 4 1201 562 263 126 20 chr5 80796374 80796572 -71740687 - Lx9 LINE L1 -487 7157 6939 4 1201 294 203 0 0 chr5 80796624 80796683 -71740576 + Lx9 LINE L1 6864 6922 -722 4 1201 33867 79 4 4 chr5 80796746 80802774 -71734485 - L1Md_F2 LINE L1 0 6582 559 4 1201 704 148 6 17 chr5 80802903 80803075 -71734184 + (TA)n Simple_repeat Simple_repeat 2 171 0 4 1201 1828 182 203 2 chr5 80803528 80803952 -71733307 - Lx LINE L1 -6 6648 6140 4 1201 324 0 0 0 chr5 80804357 80804393 -71732866 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1201 21 0 0 0 chr5 80804731 80804752 -71732507 + AT_rich Low_complexity Low_complexity 1 21 0 4 1201 729 46 9 9 chr5 80805101 80805210 -71732049 + L1_Mus2 LINE L1 6457 6565 -1 4 1201 435 264 7 74 chr5 80805582 80805717 -71731542 - B1_Mur1 SINE Alu -1 148 23 4 1201 849 280 103 25 chr5 80805936 80806271 -71730988 + ORR1D2 LTR MaLR 2 373 -11 4 1201 567 66 0 0 chr5 80806278 80806354 -71730905 + (TA)n Simple_repeat Simple_repeat 1 76 0 4 1201 1316 131 0 9 chr5 80808635 80808850 -71728409 - L1_Mus4 LINE L1 0 6636 6424 4 1201 1405 144 30 52 chr5 80808850 80809121 -71728138 + RLTR26 LTR ERVK 1 265 -377 4 1201 24 53 0 0 chr5 80809224 80809262 -71727997 + AT_rich Low_complexity Low_complexity 1 38 0 4 1201 2738 247 62 27 chr5 80809440 80810177 -71727082 + Lx5 LINE L1 6283 7045 -5 4 1201 381 95 0 0 chr5 80810210 80810273 -71726986 + (GAAA)n Simple_repeat Simple_repeat 1 63 0 4 1201 25 0 0 0 chr5 80810454 80810479 -71726780 + AT_rich Low_complexity Low_complexity 1 25 0 4 1201 612 316 239 20 chr5 80810994 80811282 -71725977 + ORR1D2 LTR MaLR 18 368 -2 4 1201 2504 181 240 81 chr5 80811763 80812538 -71724721 + RMER19B LTR ERVK 5 902 0 4 1201 27 0 0 0 chr5 80813201 80813228 -71724031 + AT_rich Low_complexity Low_complexity 1 27 0 4 1201 192 125 0 0 chr5 80813863 80813895 -71723364 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1201 21 36 0 0 chr5 80813995 80814023 -71723236 + AT_rich Low_complexity Low_complexity 1 28 0 4 1201 769 264 29 34 chr5 80814031 80814239 -71723020 - B3 SINE B2 -7 209 3 4 1201 1049 172 55 17 chr5 80814406 80814642 -71722617 - RLTR45 LTR ERVK 0 482 238 4 1201 8734 71 0 0 chr5 80814642 80815771 -71721488 + L1Md_F2 LINE L1 4458 5586 -297 4 1201 8069 43 2 11 chr5 80815771 80816774 -71720485 + L1Md_F2 LINE L1 5587 6580 -2 4 1201 1474 119 26 49 chr5 80816805 80817069 -71720190 - RLTR45 LTR ERVK -224 258 1 4 1201 387 0 0 0 chr5 80817295 80817338 -71719921 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1201 189 0 0 0 chr5 80817899 80817920 -71719339 + (TA)n Simple_repeat Simple_repeat 1 21 0 4 1201 2901 199 24 2 chr5 80818125 80818708 -71718551 - Lx5 LINE L1 -135 5742 5147 4 1201 5013 212 70 43 chr5 80818710 80819942 -71717317 + Lx5 LINE L1 5784 7048 -2 4 1201 420 71 0 0 chr5 80820318 80820374 -71716885 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1201 428 197 11 17 chr5 80821167 80821348 -71715911 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1201 348 24 0 0 chr5 80821390 80821431 -71715828 + (TA)n Simple_repeat Simple_repeat 2 42 0 4 1201 23 33 0 0 chr5 80821553 80821583 -71715676 + AT_rich Low_complexity Low_complexity 1 30 0 4 1201 402 21 0 0 chr5 80823400 80823447 -71713812 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1201 694 223 67 36 chr5 80823947 80824170 -71713089 + Lx4B LINE L1 6823 7052 -6 4 1201 735 203 7 0 chr5 80824170 80824318 -71712941 - Lx4A LINE L1 -4 7054 6906 4 1201 544 354 8 8 chr5 80824383 80824639 -71712620 - Lx9 LINE L1 -699 6945 6690 4 1201 413 269 8 8 chr5 80824786 80824917 -71712342 + L1MA6 LINE L1 6148 6278 -22 4 1201 207 146 83 0 chr5 80825194 80825242 -71712017 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 4 1201 376 288 7 43 chr5 80825532 80825670 -71711589 + B1_Mur1 SINE Alu 1 133 -16 4 1201 242 200 0 59 chr5 80825681 80825746 -71711513 + GA-rich Low_complexity Low_complexity 2 63 0 4 1201 1212 6 0 48 chr5 80825746 80825932 -71711327 + (GAGAA)n Simple_repeat Simple_repeat 3 179 0 4 1201 242 200 0 59 chr5 80825932 80825967 -71711292 + polypurine Low_complexity Low_complexity 64 96 0 4 1201 203 244 0 0 chr5 80825971 80826012 -71711247 + G-rich Low_complexity Low_complexity 2 42 0 4 1201 284 270 27 0 chr5 80826012 80826086 -71711173 - Lx9 LINE L1 -426 7218 7143 4 1201 753 207 120 4 chr5 80826078 80826311 -71710948 - L1_Mur3 LINE L1 -1341 4539 4280 4 1201 3387 55 0 0 chr5 80826715 80827134 -71710125 - L1_Mus1 LINE L1 0 6567 6149 4 1201 1703 76 0 0 chr5 80827134 80827359 -71709900 + L1_Mus1 LINE L1 5928 6152 -415 4 1201 230 368 22 33 chr5 80828191 80828371 -71708888 + MER5B DNA MER1_type 1 178 0 4 1201 599 26 13 0 chr5 80829128 80829205 -71708054 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1201 230 377 77 26 chr5 80829211 80829328 -71707931 - RSINE1 SINE B4 -37 128 6 4 1201 265 338 48 48 chr5 80829339 80829485 -71707774 - B1F1 SINE Alu -1 148 3 4 1201 483 73 0 0 chr5 80829544 80829612 -71707647 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1201 540 0 0 0 chr5 80829612 80829671 -71707588 + (GA)n Simple_repeat Simple_repeat 1 60 0 4 1201 1611 109 37 15 chr5 80833279 80833548 -71703711 - L1Md_F2 LINE L1 -3 6579 6305 4 1201 2441 32 26 0 chr5 80833548 80833858 -71703401 + L1_Mm LINE L1 5133 5450 -433 4 1201 426 390 0 0 chr5 80834629 80834770 -71702489 - RSINE1 SINE B4 0 165 25 4 1201 1341 207 116 65 chr5 80835799 80836145 -71701114 + L1_Mur2 LINE L1 1720 2054 -3823 4 1201 1005 92 0 0 chr5 80836145 80836309 -71700950 + (TC)n Simple_repeat Simple_repeat 1 164 0 4 1201 1341 207 116 65 chr5 80836309 80836453 -71700806 + L1_Mur2 LINE L1 2055 2235 -3642 4 1201 505 139 13 0 chr5 80836445 80836524 -71700735 - Lx LINE L1 -363 6291 6212 4 1201 1789 148 76 39 chr5 80836473 80836864 -71700395 + Lx LINE L1 6233 6637 -17 4 1201 216 0 0 0 chr5 80836864 80836888 -71700371 + (GA)n Simple_repeat Simple_repeat 1 24 0 4 1201 1208 179 25 10 chr5 80836888 80837197 -71700062 - RLTR25A LTR ERVK -41 1062 641 4 1201 2159 201 31 2 chr5 80837200 80837625 -71699634 - RLTR25A LTR ERVK -623 480 44 4 1201 1979 157 145 24 chr5 80837729 80838191 -71699068 - RMER6C LTR ERVK -77 613 96 4 1201 484 224 108 11 chr5 80838193 80838378 -71698881 + Lx9 LINE L1 7442 7644 0 4 1201 405 0 0 0 chr5 80839573 80839618 -71697641 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1201 1050 86 0 0 chr5 80839658 80839798 -71697461 - B1_Mm SINE Alu -7 140 1 4 1201 379 43 0 0 chr5 80840416 80840462 -71696797 - L1Md_F3 LINE L1 -130 6454 6409 4 1201 848 60 15 15 chr5 80840462 80840598 -71696661 + L1Md_F3 LINE L1 6446 6581 -3 4 1201 23 33 0 0 chr5 80841756 80841786 -71695473 + AT_rich Low_complexity Low_complexity 1 30 0 4 1201 351 306 70 91 chr5 80841857 80842044 -71695215 + B3A SINE B2 1 183 -15 4 1201 267 31 0 0 chr5 80842366 80842398 -71694861 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1201 24 32 0 0 chr5 80842700 80842731 -71694528 + AT_rich Low_complexity Low_complexity 1 31 0 4 1201 239 227 15 15 chr5 80842763 80842830 -71694429 + (TA)n Simple_repeat Simple_repeat 1 67 0 4 1201 279 0 0 0 chr5 80842830 80842861 -71694398 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1201 22 0 0 0 chr5 80843232 80843254 -71694005 + AT_rich Low_complexity Low_complexity 1 22 0 4 1201 972 228 5 5 chr5 80843290 80843497 -71693762 - URR1A DNA MER1_type -19 207 1 4 1201 202 234 0 0 chr5 80843776 80843823 -71693436 + A-rich Low_complexity Low_complexity 3 49 0 4 1201 341 331 36 61 chr5 80846422 80846618 -71690641 - L3 LINE CR1 -184 4305 4115 4 1201 994 272 11 8 chr5 80846780 80847047 -71690212 - RMER15 LTR ERVL -22 553 286 4 1201 396 0 0 0 chr5 80847057 80847101 -71690158 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 4 1201 318 339 90 84 chr5 80847967 80848266 -71688993 - MLT1B LTR MaLR -77 313 13 4 1201 26 30 0 0 chr5 80848783 80848816 -71688443 + AT_rich Low_complexity Low_complexity 1 33 0 4 1201 22 56 0 0 chr5 80848998 80849034 -71688225 + AT_rich Low_complexity Low_complexity 1 36 0 4 1201 38 68 0 0 chr5 80849276 80849349 -71687910 + AT_rich Low_complexity Low_complexity 1 73 0 4 1201 239 150 0 0 chr5 80849573 80849613 -71687646 + B2_Mm2 SINE B2 125 164 -31 4 1201 24 0 0 0 chr5 80850368 80850392 -71686867 + AT_rich Low_complexity Low_complexity 1 24 0 4 1201 1083 281 68 9 chr5 80850723 80851061 -71686198 - Lx8 LINE L1 -352 7121 6764 4 1201 33 43 0 0 chr5 80851651 80851698 -71685561 + AT_rich Low_complexity Low_complexity 1 47 0 4 1201 1470 230 18 20 chr5 80851933 80852275 -71684984 - ORR1C1 LTR MaLR -5 373 33 4 1201 378 42 0 0 chr5 80852393 80852441 -71684818 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1201 402 141 138 23 chr5 80852463 80852550 -71684709 + Lx9 LINE L1 7365 7461 -183 4 1201 2409 146 35 14 chr5 80852607 80853030 -71684229 - Lx3C LINE L1 -3 6973 6542 4 1201 328 281 11 11 chr5 80855684 80855774 -71681485 + 5S rRNA rRNA 1 90 -31 4 1201 268 321 78 26 chr5 80855774 80855799 -71681460 + AmnSINE1 SINE SINE 1 121 -454 4 1201 306 303 98 29 chr5 80856171 80856416 -71680843 - Lx9 LINE L1 -106 7538 7277 5 1201 516 391 105 32 chr5 80856761 80857265 -71679994 + MTE-int LTR MaLR 892 1432 -148 5 1201 2295 35 60 0 chr5 80857270 80857554 -71679705 - L1_Mm LINE L1 -136 5747 5447 5 1201 1794 49 88 8 chr5 80857554 80857803 -71679456 + L1Md_F3 LINE L1 6302 6570 -14 5 1201 21 57 0 0 chr5 80858891 80858926 -71678333 + AT_rich Low_complexity Low_complexity 1 35 0 5 1201 529 333 59 22 chr5 80858931 80859292 -71677967 + MTD LTR MaLR 6 406 -13 5 1201 546 330 61 32 chr5 80859310 80859589 -71677670 + MTD-int LTR MaLR 11 297 -961 5 1201 752 307 141 57 chr5 80859620 80860229 -71677030 + MTD-int LTR MaLR 495 1165 -93 5 1201 414 275 99 19 chr5 80860227 80860503 -71676756 + MTD LTR MaLR 50 385 -34 5 1201 933 79 0 0 chr5 80860503 80860630 -71676629 + (TTTTG)n Simple_repeat Simple_repeat 1 127 0 5 1201 698 80 0 0 chr5 80861088 80861188 -71676071 + B1_Mus2 SINE Alu 48 147 0 5 1201 329 62 21 0 chr5 80861188 80861236 -71676023 + (GAAA)n Simple_repeat Simple_repeat 3 51 0 5 1201 2239 166 35 37 chr5 80861291 80861754 -71675505 + Lx4A LINE L1 6592 7053 -5 5 1201 186 43 0 0 chr5 80861754 80861777 -71675482 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1201 23 54 0 0 chr5 80861777 80861814 -71675445 + AT_rich Low_complexity Low_complexity 1 37 0 5 1201 27 49 0 0 chr5 80862159 80862200 -71675059 + AT_rich Low_complexity Low_complexity 1 41 0 5 1201 892 314 107 19 chr5 80862279 80862799 -71674460 - Lx6 LINE L1 -26 7434 6479 5 1201 562 0 0 40 chr5 80862808 80862884 -71674375 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 5 1201 451 290 0 35 chr5 80863175 80863318 -71673941 - B1_Mur1 SINE Alu -9 140 3 5 1201 432 76 38 12 chr5 80863685 80863765 -71673494 + Lx2A LINE L1 6918 6999 -9 5 1201 27 0 0 0 chr5 80864265 80864292 -71672967 + AT_rich Low_complexity Low_complexity 1 27 0 5 1201 227 73 0 47 chr5 80865142 80865185 -71672074 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 5 1201 1070 57 28 0 chr5 80865185 80865326 -71671933 - B1_Mus2 SINE Alu 0 147 3 5 1201 4308 64 2 15 chr5 80866982 80867566 -71669693 + L1_Mm LINE L1 4253 4828 -1055 5 1201 273 150 15 91 chr5 80867557 80867623 -71669636 + Lx LINE L1 5659 5719 -935 5 1201 625 370 21 7 chr5 80867842 80868128 -71669131 + Lx8 LINE L1 7056 7345 -128 5 1201 231 345 45 0 chr5 80869479 80869589 -71667670 - MIRc SINE MIR -117 151 37 5 1201 268 360 0 0 chr5 80870960 80871049 -71666210 + B4A SINE B4 186 274 -18 5 1202 22 56 0 0 chr5 80872066 80872102 -71665157 + AT_rich Low_complexity Low_complexity 1 36 0 5 1202 210 296 102 0 chr5 80872821 80872909 -71664350 + PB1 SINE Alu 29 125 -2 5 1202 351 0 0 0 chr5 80872995 80873034 -71664225 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1202 216 163 0 0 chr5 80873088 80873131 -71664128 + GA-rich Low_complexity Low_complexity 2 44 0 5 1202 288 0 0 0 chr5 80873186 80873218 -71664041 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1202 198 0 0 0 chr5 80873869 80873891 -71663368 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1202 558 29 0 0 chr5 80874066 80874134 -71663125 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1202 219 69 0 0 chr5 80874180 80874209 -71663050 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 5 1202 536 289 0 7 chr5 80874209 80874352 -71662907 - Lx7 LINE L1 -391 7305 7164 5 1202 586 219 138 74 chr5 80874412 80874629 -71662630 - RMER12 LTR ERVK -104 1218 988 5 1202 246 194 0 0 chr5 80874629 80874691 -71662568 + A-rich Low_complexity Low_complexity 1 62 0 5 1202 245 221 54 75 chr5 80874694 80874787 -71662472 - RMER12 LTR ERVK -533 789 699 5 1202 1133 256 199 17 chr5 80874881 80875596 -71661663 - RMER12 LTR ERVK -395 1009 1 5 1202 288 48 2 51 chr5 80875627 80875688 -71661571 - L1Md_T LINE L1 0 6582 6523 5 1202 27168 17 0 0 chr5 80875716 80878932 -71658327 + L1_Mm LINE L1 1244 4460 -1423 5 1202 2585 255 153 18 chr5 80878931 80879809 -71657450 - Lx7 LINE L1 -541 7155 6160 5 1202 250 270 73 40 chr5 80879819 80880063 -71657196 - L1_Rod LINE L1 -2515 3332 3081 5 1202 22 35 0 0 chr5 80880346 80880375 -71656884 + AT_rich Low_complexity Low_complexity 1 29 0 5 1202 23 33 0 0 chr5 80880422 80880452 -71656807 + AT_rich Low_complexity Low_complexity 1 30 0 5 1202 37904 30 0 1 chr5 80880608 80887012 -71650247 - L1Md_T LINE L1 0 6585 88 5 1202 35 92 0 0 chr5 80887259 80887357 -71649902 + AT_rich Low_complexity Low_complexity 1 98 0 5 1202 22 56 0 0 chr5 80887445 80887481 -71649778 + AT_rich Low_complexity Low_complexity 1 36 0 5 1202 23 0 0 0 chr5 80887584 80887607 -71649652 + AT_rich Low_complexity Low_complexity 1 23 0 5 1202 30 0 0 0 chr5 80888098 80888128 -71649131 + AT_rich Low_complexity Low_complexity 1 30 0 5 1202 2674 179 29 12 chr5 80888971 80889462 -71647797 + Lx4A LINE L1 6556 7054 -4 5 1202 261 436 16 40 chr5 80889572 80889825 -71647434 - MLT2C2 LTR ERVL -63 351 105 5 1202 284 318 18 18 chr5 80891143 80891255 -71646004 - MLT2C2 LTR ERVL -352 112 1 5 1202 226 204 191 18 chr5 80892253 80892363 -71644896 + Lx9 LINE L1 7509 7637 -7 5 1202 7135 31 0 0 chr5 80892467 80893305 -71643954 - L1Md_T LINE L1 -1 6581 5744 5 1202 495 304 93 19 chr5 80893778 80894007 -71643252 + B4A SINE B4 50 291 -1 5 1202 326 204 0 0 chr5 80894014 80894068 -71643191 + HAL1-3A_ME LINE L1 1977 2030 -828 5 1202 1239 122 54 13 chr5 80894548 80894772 -71642487 - Lx2 LINE L1 0 6997 6765 5 1202 1349 156 0 0 chr5 80894758 80894970 -71642289 - Lx2 LINE L1 -349 6648 6437 5 1202 387 333 21 21 chr5 80894971 80895112 -71642147 - ID_B1 SINE B4 -21 203 63 5 1202 25 31 0 0 chr5 80895486 80895518 -71641741 + AT_rich Low_complexity Low_complexity 1 32 0 5 1202 604 232 147 4 chr5 80895869 80896094 -71641165 + Lx9 LINE L1 7387 7643 -1 5 1202 309 314 28 55 chr5 80896286 80896298 -71640961 + L1M5 LINE L1 3059 3069 -3077 5 1202 1104 57 0 7 chr5 80896298 80896440 -71640819 + B1_Mm SINE Alu 1 141 -6 5 1202 309 314 28 55 chr5 80896440 80896572 -71640687 + L1M5 LINE L1 3070 3199 -2947 5 1202 609 231 105 126 chr5 80896746 80897118 -71640141 - RLTR9A LTR ERVK 0 368 5 5 1202 252 264 123 28 chr5 80897554 80897733 -71639526 + L1M3 LINE L1 4365 4560 -1583 5 1202 324 302 138 43 chr5 80897939 80898517 -71638742 + L1M3 LINE L1 4542 5174 -966 5 1202 24 32 0 0 chr5 80898773 80898804 -71638455 + AT_rich Low_complexity Low_complexity 1 31 0 5 1202 3332 121 36 20 chr5 80898807 80899362 -71637897 - Lx3_Mus LINE L1 -8 7001 6438 5 1202 227 79 0 26 chr5 80899558 80899597 -71637662 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1202 204 167 0 0 chr5 80900172 80900220 -71637039 + T-rich Low_complexity Low_complexity 1 48 0 5 1202 37959 30 0 1 chr5 80900255 80906911 -71630348 - L1Md_T LINE L1 0 6585 1 5 1202 364 163 12 0 chr5 80906933 80907019 -71630240 - Lx5 LINE L1 0 7050 6964 5 1202 850 250 97 28 chr5 80907029 80907317 -71629942 - Lx2B LINE L1 -2 6998 6691 5 1202 267 31 0 0 chr5 80907720 80907752 -71629507 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1202 569 364 28 11 chr5 80907889 80908172 -71629087 + Lx8 LINE L1 7112 7399 -74 5 1202 186 174 80 80 chr5 80908340 80908415 -71628844 - L2 LINE L2 -1894 1525 1451 5 1202 3194 47 15 2 chr5 80909711 80910117 -71627142 - L1Md_F2 LINE L1 0 6582 6172 5 1202 1312 168 37 22 chr5 80910819 80911087 -71626172 - Lx LINE L1 -67 6587 6316 5 1202 514 248 25 147 chr5 80914475 80914618 -71622641 - Lx8 LINE L1 -1546 5927 5754 5 1202 5685 91 5 5 chr5 80914618 80915425 -71621834 + L1_Mus3 LINE L1 5824 6630 -8 5 1202 514 232 21 157 chr5 80915425 80915577 -71621682 - Lx8 LINE L1 -94 5753 5628 5 1202 309 360 37 14 chr5 80915633 80915847 -71621412 + Lx9 LINE L1 7196 7414 -230 5 1202 636 221 31 46 chr5 80915919 80916114 -71621145 + Lx9 LINE L1 7290 7481 -163 5 1202 371 214 23 8 chr5 80916126 80916258 -71621001 + GA-rich Low_complexity Low_complexity 3 136 0 5 1202 409 360 65 4 chr5 80917825 80918087 -71619172 + B4A SINE B4 3 280 -12 5 1202 555 29 0 0 chr5 80918334 80918403 -71618856 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1202 23 68 0 0 chr5 80919862 80919906 -71617353 + AT_rich Low_complexity Low_complexity 1 44 0 5 1202 310 352 78 9 chr5 80920144 80920362 -71616897 + L1M5 LINE L1 5285 5517 -645 5 1202 1143 296 42 60 chr5 80921828 80922489 -71614770 + Lx9 LINE L1 6860 7508 -136 5 1202 528 210 95 28 chr5 80922471 80922682 -71614577 + Lx9 LINE L1 7419 7643 -1 5 1202 284 245 36 48 chr5 80925072 80925196 -71612063 + MER34 LTR ERV1 459 585 -2 5 1202 279 0 0 0 chr5 80926297 80926328 -71610931 + (GA)n Simple_repeat Simple_repeat 1 31 0 5 1202 684 36 0 0 chr5 80926455 80926538 -71610721 + (TA)n Simple_repeat Simple_repeat 1 83 0 5 1202 802 323 14 74 chr5 80927018 80927436 -71609823 + Lx9 LINE L1 6586 6978 -666 5 1202 1991 164 0 19 chr5 80927525 80927886 -71609373 + Lx3A LINE L1 6614 6967 -14 5 1202 293 371 43 30 chr5 80928000 80928300 -71608959 + Lx9 LINE L1 7137 7440 -204 5 1202 444 77 0 0 chr5 80929355 80929420 -71607839 + (T)n Simple_repeat Simple_repeat 1 65 0 5 1202 1049 116 0 0 chr5 80929420 80929567 -71607692 - B1_Mus2 SINE Alu 0 147 1 5 1202 876 28 0 0 chr5 80929884 80929991 -71607268 + (CCCTAA)n Simple_repeat Simple_repeat 3 109 0 5 1202 383 323 59 93 chr5 80930030 80930354 -71606905 - MER89 LTR ERV1 -26 533 221 5 1202 354 45 0 0 chr5 80930754 80930798 -71606461 + (GGA)n Simple_repeat Simple_repeat 2 45 0 5 1202 223 157 14 14 chr5 80930849 80930920 -71606339 + (TTATA)n Simple_repeat Simple_repeat 2 72 0 5 1202 24 53 0 0 chr5 80930923 80930961 -71606298 + AT_rich Low_complexity Low_complexity 1 38 0 5 1202 1138 235 76 33 chr5 80930966 80931270 -71605989 - Lx2B LINE L1 -2 6998 6682 5 1202 533 149 64 0 chr5 80931273 80931414 -71605845 + (CATATA)n Simple_repeat Simple_repeat 2 151 0 5 1202 1061 110 0 0 chr5 80932195 80932341 -71604918 + B1_Mm SINE Alu 2 147 0 5 1202 200 61 61 0 chr5 80932341 80932374 -71604885 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1202 194 326 174 0 chr5 80933476 80933574 -71603685 + L2 LINE L2 2741 2855 -564 6 1202 1055 116 17 0 chr5 80933955 80934128 -71603131 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 6 1202 262 123 17 17 chr5 80937226 80937284 -71599975 + GA-rich Low_complexity Low_complexity 2 59 0 6 1202 378 0 0 0 chr5 80938067 80938109 -71599150 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1202 29 0 0 0 chr5 80939716 80939745 -71597514 + AT_rich Low_complexity Low_complexity 1 29 0 6 1202 1029 275 59 37 chr5 80940034 80940524 -71596735 - Lx7 LINE L1 -1 7695 7195 6 1202 356 192 38 19 chr5 80940602 80940708 -71596551 - Lx3C LINE L1 -7 6969 6862 6 1202 2523 135 20 18 chr5 80940708 80941153 -71596106 - Lx3C LINE L1 -522 6454 6009 6 1202 314 301 7 56 chr5 80941644 80941788 -71595471 - MLT2B4 LTR ERVL -346 210 74 6 1202 233 367 40 30 chr5 80942339 80942440 -71594819 + MLT1H LTR MaLR 359 460 -89 6 1202 324 0 0 0 chr5 80942554 80942590 -71594669 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1202 1940 170 21 16 chr5 80942590 80943026 -71594233 - L1_Mur1 LINE L1 -2175 3711 3274 6 1202 405 114 14 0 chr5 80943544 80943614 -71593645 - L1_Mur1 LINE L1 -2597 3289 3219 6 1202 8038 100 39 31 chr5 80944389 80945472 -71591787 - Lx3_Mus LINE L1 -2 7007 5909 6 1202 207 0 0 0 chr5 80945472 80945495 -71591764 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1202 8038 100 39 31 chr5 80945495 80945706 -71591553 - Lx3_Mus LINE L1 -1101 5908 5703 6 1202 596 180 0 8 chr5 80945913 80946036 -71591223 + (TA)n Simple_repeat Simple_repeat 1 122 0 6 1202 552 166 0 21 chr5 80946810 80946952 -71590307 + (TA)n Simple_repeat Simple_repeat 2 140 0 6 1202 215 271 27 27 chr5 80948043 80948075 -71589184 + polypyrimidine Low_complexity Low_complexity 81 111 0 6 1202 378 0 0 0 chr5 80948075 80948117 -71589142 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1202 215 271 27 27 chr5 80948117 80948194 -71589065 + CT-rich Low_complexity Low_complexity 2 80 0 6 1202 4744 251 132 33 chr5 80948209 80949758 -71587501 + Lx6 LINE L1 5773 7459 -1 6 1202 4036 155 3 13 chr5 80949781 80950462 -71586797 - L1_Mm LINE L1 -170 5713 5040 6 1202 576 126 0 0 chr5 80950458 80950545 -71586714 + L1_Mus4 LINE L1 5651 5737 -899 6 1202 638 324 131 53 chr5 80950768 80951371 -71585888 - MLT1E1 LTR MaLR 0 654 5 6 1202 322 344 117 63 chr5 80951663 80952134 -71585125 + L1MCa LINE L1 1 479 -5566 6 1202 734 358 92 18 chr5 80953796 80954288 -71582971 + Lx8 LINE L1 6786 7313 -160 6 1202 381 58 0 0 chr5 80954296 80954348 -71582911 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1202 32 43 0 0 chr5 80954499 80954545 -71582714 + AT_rich Low_complexity Low_complexity 1 46 0 6 1202 302 363 77 0 chr5 80954584 80954766 -71582493 + L1MC3 LINE L1 7132 7327 -458 6 1202 233 303 99 18 chr5 80955081 80955192 -71582067 - Lx8 LINE L1 -233 7240 7121 6 1202 326 296 170 28 chr5 80955195 80955407 -71581852 + L1Md_F LINE L1 502 743 -5776 6 1202 2587 186 15 17 chr5 80955436 80955957 -71581302 + L1Md_F LINE L1 570 1089 -5430 6 1202 3964 77 86 20 chr5 80955951 80956934 -71580325 + L1_Mus2 LINE L1 5519 6566 0 6 1202 229 333 35 21 chr5 80956932 80957076 -71580183 - Lx8 LINE L1 -332 7141 6996 6 1202 605 119 10 0 chr5 80957114 80957215 -71580044 + (TA)n Simple_repeat Simple_repeat 2 103 0 6 1202 1058 372 28 11 chr5 80957275 80957889 -71579370 - Lx8 LINE L1 -621 6852 6229 6 1202 25 31 0 0 chr5 80958266 80958298 -71578961 + AT_rich Low_complexity Low_complexity 1 32 0 6 1202 339 133 50 0 chr5 80958491 80958551 -71578708 + MT2A LTR ERVL 3 65 -468 6 1202 681 122 0 0 chr5 80958559 80958674 -71578585 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 6 1202 180 176 0 0 chr5 80958675 80958709 -71578550 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 6 1202 3965 209 57 16 chr5 80958712 80959571 -71577688 - Lx4B LINE L1 -4 7054 6161 6 1202 340 218 0 0 chr5 80959581 80959659 -71577600 - Lx4B LINE L1 -1107 5951 5874 6 1202 1327 283 47 7 chr5 80959661 80960091 -71577168 + MT2A LTR ERVL 77 523 -10 6 1202 249 313 100 10 chr5 80960492 80960592 -71576667 + L2a LINE L2 3318 3426 0 6 1202 26 50 0 0 chr5 80961219 80961259 -71576000 + AT_rich Low_complexity Low_complexity 1 40 0 6 1202 430 241 28 14 chr5 80961761 80961904 -71575355 - Lx6 LINE L1 0 7460 7316 6 1202 1057 314 21 35 chr5 80962371 80962747 -71574512 - MTEb LTR MaLR 0 379 9 6 1202 353 320 60 7 chr5 80962756 80962907 -71574352 - MTEb-int LTR MaLR -1 1579 1421 6 1202 1354 326 53 75 chr5 80962899 80963563 -71573696 - MTEb-int LTR MaLR -931 649 1 6 1202 301 296 146 30 chr5 80963563 80963727 -71573532 - MTEb LTR MaLR 0 379 197 6 1202 246 32 0 0 chr5 80963727 80963758 -71573501 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1202 263 315 70 53 chr5 80964323 80964437 -71572822 - MTEb LTR MaLR -258 121 6 6 1202 229 254 90 0 chr5 80964448 80964515 -71572744 + MLT1A1 LTR MaLR 4 76 -332 6 1202 283 302 82 70 chr5 80964511 80964682 -71572577 + B2_Mm2 SINE B2 13 185 -10 6 1202 335 354 74 36 chr5 80964731 80964993 -71572266 + MLT1A1 LTR MaLR 77 381 -27 6 1202 288 0 0 0 chr5 80965991 80966023 -71571236 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1202 25 75 0 0 chr5 80967223 80967276 -71569983 + AT_rich Low_complexity Low_complexity 1 53 0 6 1202 362 345 34 27 chr5 80967642 80967788 -71569471 - MTEa LTR MaLR -43 336 190 6 1202 282 279 44 70 chr5 80969009 80969167 -71568092 + RLTR43A LTR ERVK 211 364 0 6 1202 258 32 0 0 chr5 80969190 80969221 -71568038 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1202 24 0 0 0 chr5 80970869 80970893 -71566366 + AT_rich Low_complexity Low_complexity 1 24 0 6 1202 22 0 0 0 chr5 80970938 80970960 -71566299 + AT_rich Low_complexity Low_complexity 1 22 0 6 1202 396 0 0 0 chr5 80971608 80971652 -71565607 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1202 466 179 54 0 chr5 80971938 80972050 -71565209 - Lx9 LINE L1 -10 7634 7517 6 1202 446 313 99 11 chr5 80973429 80973610 -71563649 - B3 SINE B2 -19 197 1 6 1202 1385 220 0 54 chr5 80973888 80974224 -71563035 - RMER6C LTR ERVK -2 688 371 6 1202 293 213 118 146 chr5 80974308 80974418 -71562841 - MT2B LTR ERVL -315 286 180 6 1202 285 157 39 0 chr5 80974411 80974462 -71562797 - RMER6C LTR ERVK -667 53 1 6 1202 3519 201 50 11 chr5 80975557 80976280 -71560979 + Lx2B LINE L1 6245 6995 -5 6 1202 26 0 0 0 chr5 80976405 80976431 -71560828 + AT_rich Low_complexity Low_complexity 1 26 0 6 1202 8492 75 9 3 chr5 80976733 80978061 -71559198 - L1Md_F2 LINE L1 -4 6578 5244 6 1202 348 0 58 0 chr5 80978061 80978113 -71559146 + (TA)n Simple_repeat Simple_repeat 2 56 0 6 1202 8492 74 9 3 chr5 80978113 80978597 -71558662 - L1Md_F2 LINE L1 -640 5243 4751 6 1202 565 79 0 0 chr5 80978598 80978674 -71558585 + L1Md_F2 LINE L1 4651 4726 -1157 6 1202 5058 100 17 8 chr5 80978953 80979706 -71557553 - L1_Mus4 LINE L1 -1 6635 5876 6 1202 1724 82 20 0 chr5 80979706 80979950 -71557309 + L1_Mus4 LINE L1 5622 5870 -766 6 1202 1244 205 51 31 chr5 80980897 80981249 -71556010 - RLTR10D LTR ERVK 0 359 1 6 1202 262 61 41 0 chr5 80981509 80981558 -71555701 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 1202 1060 94 0 0 chr5 80981558 80981696 -71555563 - B1_Mus2 SINE Alu -9 138 1 6 1202 26 30 0 0 chr5 80981844 80981877 -71555382 + AT_rich Low_complexity Low_complexity 1 33 0 6 1202 196 241 191 12 chr5 80982172 80982256 -71555003 + L2 LINE L2 2358 2456 -963 6 1202 254 250 61 24 chr5 80982805 80982887 -71554372 + B4 SINE B4 1 85 -207 6 1202 346 208 116 8 chr5 80982887 80983008 -71554251 + Lx9 LINE L1 7510 7643 -1 6 1202 773 94 7 21 chr5 80983159 80983300 -71553959 + Lx3B LINE L1 5962 6100 -873 6 1202 2546 152 18 20 chr5 80983300 80983755 -71553504 + Lx3B LINE L1 6516 6969 -4 6 1202 22 35 0 0 chr5 80983763 80983792 -71553467 + AT_rich Low_complexity Low_complexity 1 29 0 6 1202 2982 234 32 31 chr5 80983803 80984237 -71553022 - Lx5 LINE L1 -684 6366 5941 6 1202 477 0 0 0 chr5 80984237 80984290 -71552969 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1202 3422 210 22 6 chr5 80984290 80985105 -71552154 - Lx5 LINE L1 -1110 5940 5097 6 1202 1057 229 61 2 chr5 80985109 80985378 -71551881 - ORR1D1 LTR MaLR -50 309 1 6 1202 262 273 15 0 chr5 80985406 80985472 -71551787 + CT-rich Low_complexity Low_complexity 5 71 0 6 1202 1393 211 76 3 chr5 80985508 80985864 -71551395 - Lx5 LINE L1 -770 5107 4726 6 1202 34947 73 9 11 chr5 80985863 80991932 -71545327 - L1Md_F2 LINE L1 -12 6570 520 6 1202 1309 202 8 73 chr5 80991922 80992033 -71545226 - Lx5 LINE L1 -1138 4739 4634 6 1202 201 39 0 0 chr5 80992033 80992059 -71545200 + (TCTTG)n Simple_repeat Simple_repeat 3 28 0 6 1202 1309 202 8 73 chr5 80992059 80992304 -71544955 - Lx5 LINE L1 -1244 4633 4406 6 1202 2935 87 0 10 chr5 80992316 80992713 -71544546 - L1_Mus1 LINE L1 -1 6566 6174 6 1202 198 0 0 0 chr5 80992714 80992736 -71544523 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 6 1202 2138 239 43 36 chr5 80992979 80993454 -71543805 + RMER1C Other Other 689 1205 -137 6 1202 1095 139 0 0 chr5 80993454 80993634 -71543625 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 1202 2138 236 44 37 chr5 80993634 80993758 -71543501 + RMER1C Other Other 1206 1329 -13 6 1202 1561 176 18 0 chr5 80993766 80994044 -71543215 + Lx2 LINE L1 6715 6997 0 6 1202 1617 42 0 0 chr5 80994156 80994348 -71542911 + L1Md_F2 LINE L1 5395 5586 -297 6 1202 8089 49 2 0 chr5 80994348 80995342 -71541917 + L1Md_F2 LINE L1 5587 6582 0 6 1202 2542 215 5 37 chr5 80996604 80997280 -71539979 - Lx5 LINE L1 -1035 6015 5357 6 1202 387 273 78 30 chr5 80997291 80997457 -71539802 + Lx6 LINE L1 7257 7430 -30 6 1202 686 160 8 0 chr5 80997501 80997632 -71539627 + GA-rich Low_complexity Low_complexity 1 132 0 6 1202 752 288 70 91 chr5 80997791 80998165 -71539094 + MTE2a LTR MaLR 1 366 -13 6 1202 564 358 37 16 chr5 80998205 80998449 -71538810 + MLT1B LTR MaLR 142 390 0 6 1202 193 341 11 11 chr5 80998645 80998734 -71538525 - MIRc SINE MIR -3 265 177 6 1202 21 36 0 0 chr5 80998757 80998785 -71538474 + AT_rich Low_complexity Low_complexity 1 28 0 6 1202 423 0 0 0 chr5 80999943 80999990 -71537269 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 6 1202 1846 271 30 0 chr5 81000006 81000505 -71536754 - Lx9 LINE L1 -190 7454 6941 1 150 9386 219 46 25 chr5 81000486 81003673 -71533586 + Lx5 LINE L1 3514 6765 -285 2 1203 1150 69 7 0 chr5 81003673 81003818 -71533441 - B1_Mus2 SINE Alu 0 147 2 3 1203 5242 231 40 51 chr5 81003818 81003986 -71533273 + Lx5 LINE L1 6766 6933 -117 2 1203 1981 210 76 20 chr5 81003986 81004610 -71532649 - RMER6A LTR ERVK -105 651 1 4 1203 248 176 47 38 chr5 81004681 81004787 -71532472 + (TATAA)n Simple_repeat Simple_repeat 4 110 0 5 1203 937 40 0 0 chr5 81004932 81005056 -71532203 - L1Md_A LINE L1 -2 6580 6457 6 1203 15134 16 0 0 chr5 81005056 81006827 -71530432 - L1_Mm LINE L1 -1491 4392 2622 7 1203 4702 59 1 5 chr5 81006849 81007468 -71529791 - L1Md_A LINE L1 -5519 1205 623 8 1203 589 14 0 0 chr5 81008112 81008183 -71529076 - B1_Mus2 SINE Alu -9 138 68 9 1203 258 295 24 97 chr5 81009693 81009817 -71527442 + PB1D10 SINE Alu 3 117 0 1 1203 197 83 28 0 chr5 81010719 81010755 -71526504 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1203 206 250 18 0 chr5 81011196 81011252 -71526007 + CT-rich Low_complexity Low_complexity 1 57 0 1 1203 31 26 0 0 chr5 81012755 81012793 -71524466 + AT_rich Low_complexity Low_complexity 1 38 0 1 1203 581 178 8 0 chr5 81012842 81012960 -71524299 + (TA)n Simple_repeat Simple_repeat 2 120 0 1 1203 468 0 0 0 chr5 81014281 81014333 -71522926 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1203 189 0 0 0 chr5 81014333 81014353 -71522906 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1203 411 21 0 0 chr5 81014400 81014448 -71522811 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1203 574 316 25 59 chr5 81014497 81014736 -71522523 - B4 SINE B4 -60 232 2 1 1203 468 346 12 30 chr5 81014815 81014979 -71522280 - B3 SINE B2 -7 209 49 1 1203 4274 151 36 10 chr5 81015228 81015956 -71521303 + Lx LINE L1 5908 6654 0 1 1203 495 0 0 0 chr5 81016620 81016675 -71520584 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1203 381 285 61 37 chr5 81016818 81016982 -71520277 + L2 LINE L2 2479 2646 -773 2 1203 562 319 53 28 chr5 81017342 81017364 -71519895 + Lx3A LINE L1 5583 5601 -563 2 1203 4113 106 43 2 chr5 81017364 81017989 -71519270 - Lx3_Mus LINE L1 0 7009 6359 2 1203 4415 130 56 22 chr5 81017989 81018334 -71518925 + Lx3A LINE L1 5587 5913 -1068 2 1203 222 105 0 0 chr5 81018334 81018372 -71518887 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 1203 4415 123 56 22 chr5 81018372 81018771 -71518488 + Lx3A LINE L1 5914 6343 -638 2 1203 200 327 0 0 chr5 81018932 81018987 -71518272 + L2 LINE L2 2839 2893 -526 2 1203 444 334 100 65 chr5 81019683 81020202 -71517057 + L2 LINE L2 1946 2482 -937 2 1203 481 250 50 0 chr5 81020430 81020570 -71516689 - Lx9 LINE L1 -12 7632 7486 2 1203 468 0 0 0 chr5 81020616 81020668 -71516591 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1203 378 0 0 0 chr5 81020865 81020907 -71516352 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1203 1690 277 23 19 chr5 81020960 81021442 -71515817 - Lx5 LINE L1 0 7050 6567 2 1203 224 208 0 0 chr5 81022228 81022276 -71514983 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1203 933 288 83 0 chr5 81022291 81022555 -71514704 - B4A SINE B4 -1 291 6 3 1203 37 81 0 0 chr5 81022635 81022721 -71514538 + AT_rich Low_complexity Low_complexity 1 86 0 3 1203 40 0 0 0 chr5 81023069 81023109 -71514150 + AT_rich Low_complexity Low_complexity 1 40 0 3 1203 27 0 0 0 chr5 81023330 81023357 -71513902 + AT_rich Low_complexity Low_complexity 1 27 0 3 1203 378 359 31 47 chr5 81024552 81024809 -71512450 + MLT1A0 LTR MaLR 48 300 -65 3 1203 2744 96 2 35 chr5 81024947 81025348 -71511911 + L1_Mus2 LINE L1 6178 6565 -1 3 1203 309 26 0 0 chr5 81025456 81025494 -71511765 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1203 1021 53 0 8 chr5 81025614 81025748 -71511511 + B2_Mm2 SINE B2 47 179 -16 3 1203 25 83 0 0 chr5 81025753 81025813 -71511446 + AT_rich Low_complexity Low_complexity 1 60 0 3 1203 21 0 0 0 chr5 81025931 81025952 -71511307 + AT_rich Low_complexity Low_complexity 1 21 0 4 1203 225 0 0 0 chr5 81028522 81028547 -71508712 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1203 22 0 0 0 chr5 81029739 81029761 -71507498 + AT_rich Low_complexity Low_complexity 1 22 0 4 1203 945 107 12 6 chr5 81030161 81030321 -71506938 - L1_Mus3 LINE L1 -7 6631 6471 4 1203 370 280 65 71 chr5 81030374 81030543 -71506716 + MER3 DNA MER1_type 9 176 -33 4 1203 332 372 59 28 chr5 81031004 81031294 -71505965 + L2a LINE L2 2993 3291 -135 4 1203 431 276 19 9 chr5 81031503 81031615 -71505644 - MER58C DNA MER1_type -264 122 1 4 1203 427 311 7 13 chr5 81032501 81032651 -71504608 - RMER15 LTR ERVL -46 529 381 4 1203 279 0 0 0 chr5 81032832 81032863 -71504396 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1203 1737 152 0 0 chr5 81034757 81035047 -71502212 - L1_Mur2 LINE L1 -1250 4627 4338 4 1203 537 107 0 0 chr5 81035048 81035132 -71502127 + L1_Mur2 LINE L1 4619 4702 -1175 4 1203 6019 43 3 19 chr5 81035132 81035888 -71501371 - IAPEz-int LTR ERVK -2 6479 5736 5 1203 2173 75 0 0 chr5 81035887 81036165 -71501094 - IAPEz-int LTR ERVK -4845 1636 1359 5 1203 3929 87 45 26 chr5 81036165 81036885 -71500374 - IAPEz-int LTR ERVK -5819 662 3 5 1203 2362 120 135 7 chr5 81036887 81037308 -71499951 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1203 6511 157 18 11 chr5 81037312 81039247 -71498012 + Lx LINE L1 4707 6653 -1 5 1203 1758 215 22 78 chr5 81039430 81039890 -71497369 + RMER10A LTR ERVL 3 436 -6 5 1203 2527 238 20 40 chr5 81040295 81040979 -71496280 - Lx7 LINE L1 -282 7414 6744 5 1203 255 333 66 52 chr5 81041450 81041586 -71495673 + MIRm SINE MIR 24 161 -115 5 1203 196 262 0 110 chr5 81042235 81042308 -71494951 + L3 LINE CR1 949 1013 -3476 5 1203 250 247 26 0 chr5 81043038 81043115 -71494144 + (CAAA)n Simple_repeat Simple_repeat 2 80 0 5 1203 1956 308 51 19 chr5 81043116 81043844 -71493415 - Lx7 LINE L1 -407 7289 6539 5 1203 926 242 14 5 chr5 81043845 81044057 -71493202 - Lx9 LINE L1 -466 7178 6965 5 1203 716 246 61 5 chr5 81044054 81044250 -71493009 + Lx9 LINE L1 7223 7429 -215 5 1203 297 0 0 0 chr5 81044290 81044323 -71492936 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1203 364 336 83 40 chr5 81045917 81046289 -71490970 + L1ME3A LINE L1 5549 5936 -237 6 1203 3409 172 108 43 chr5 81047126 81047867 -71489392 - Lx4A LINE L1 -437 6621 5833 6 1203 1951 181 50 3 chr5 81047867 81048243 -71489016 + Lx4A LINE L1 6655 7048 -10 6 1203 26 0 0 0 chr5 81048248 81048274 -71488985 + AT_rich Low_complexity Low_complexity 1 26 0 6 1203 191 81 54 0 chr5 81048287 81048324 -71488935 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 6 1203 226 286 11 35 chr5 81048523 81048610 -71488649 + L1ME3A LINE L1 6080 6164 -15 6 1203 794 11 0 10 chr5 81049456 81049552 -71487707 + (GAA)n Simple_repeat Simple_repeat 2 96 0 6 1203 860 188 88 63 chr5 81049766 81050005 -71487254 + Lx5 LINE L1 5647 5891 -1159 6 1203 1646 297 20 28 chr5 81050005 81050622 -71486637 + Lx6 LINE L1 6455 7434 -26 6 1203 641 181 0 0 chr5 81050877 81050993 -71486266 + Lx2 LINE L1 6793 6908 -89 6 1203 1335 330 57 32 chr5 81050998 81051768 -71485491 + Lx9 LINE L1 6589 7377 -267 6 1203 378 0 0 0 chr5 81051798 81051840 -71485419 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1203 552 53 0 0 chr5 81051843 81051919 -71485340 + (GA)n Simple_repeat Simple_repeat 1 76 0 7 1203 224 362 62 65 chr5 81051963 81052288 -71484971 + L2 LINE L2 2139 2462 -957 7 1203 1229 104 50 0 chr5 81055017 81055199 -71482060 - Lx3C LINE L1 -393 6583 6393 7 1203 183 80 0 0 chr5 81055486 81055511 -71481748 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1203 409 280 0 142 chr5 81055892 81056075 -71481184 + ID_B1 SINE B4 2 158 -66 7 1203 338 321 0 41 chr5 81056691 81056837 -71480422 + HAL1-2a_MD LINE L1 2343 2482 -542 7 1203 601 66 66 0 chr5 81056840 81056931 -71480328 - L1_Mus3 LINE L1 -633 6005 5909 7 1203 4170 97 5 12 chr5 81056926 81057521 -71479738 + L1_Mus3 LINE L1 5992 6582 -56 7 1203 1032 134 19 97 chr5 81057808 81058014 -71479245 + B2_Mm2 SINE B2 2 191 -4 7 1203 629 297 20 30 chr5 81058167 81058365 -71478894 + B3 SINE B2 6 201 -15 7 1203 944 242 38 25 chr5 81058376 81058613 -71478646 - Lx5 LINE L1 0 7050 6811 7 1203 266 0 29 0 chr5 81058879 81058913 -71478346 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1203 1138 58 0 0 chr5 81058913 81059052 -71478207 - B1_Mus1 SINE Alu -9 139 1 8 1203 916 163 27 5 chr5 81059078 81059263 -71477996 - Lx3B LINE L1 -4 6969 6781 8 1203 532 318 137 4 chr5 81060134 81060390 -71476869 - LTR50 LTR ERVL 0 795 506 8 1203 343 301 54 34 chr5 81060752 81060900 -71476359 - Tigger7 DNA MER2_type -14 2477 2327 8 1203 237 33 0 0 chr5 81060902 81060932 -71476327 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1203 237 283 0 86 chr5 81060955 81061013 -71476246 + B1F2 SINE Alu 4 56 -93 8 1203 456 190 16 23 chr5 81061364 81061493 -71475766 + CT-rich Low_complexity Low_complexity 5 132 0 8 1203 2896 43 0 0 chr5 81061939 81062282 -71474977 - L1Md_F2 LINE L1 -177 5706 5364 8 1203 7079 35 33 0 chr5 81062282 81063142 -71474117 + L1Md_F2 LINE L1 5680 6567 -15 8 1203 198 0 0 0 chr5 81063214 81063236 -71474023 + (CA)n Simple_repeat Simple_repeat 1 22 0 8 1203 360 0 0 0 chr5 81063236 81063275 -71473984 + (GA)n Simple_repeat Simple_repeat 2 41 0 9 1203 186 43 0 0 chr5 81064144 81064167 -71473092 + (TTTTTA)n Simple_repeat Simple_repeat 4 26 0 9 1203 408 88 0 0 chr5 81064218 81064275 -71472984 + (TAA)n Simple_repeat Simple_repeat 3 59 0 9 1203 21 57 0 0 chr5 81064668 81064703 -71472556 + AT_rich Low_complexity Low_complexity 1 35 0 9 1203 265 308 128 70 chr5 81065304 81065317 -71471942 - MER2 DNA MER2_type -24 321 309 9 1203 189 107 0 0 chr5 81065317 81065345 -71471914 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1203 265 308 128 70 chr5 81065345 81065558 -71471701 - MER2 DNA MER2_type -37 308 82 9 1203 561 15 0 0 chr5 81066122 81066188 -71471071 + (TA)n Simple_repeat Simple_repeat 1 66 0 9 1203 581 315 68 25 chr5 81066321 81066730 -71470529 - Lx6 LINE L1 -688 6362 5908 9 1203 339 277 140 57 chr5 81067191 81067431 -71469828 + L1MB7 LINE L1 4054 4292 -1854 9 1203 471 118 0 0 chr5 81067431 81067507 -71469752 + (TG)n Simple_repeat Simple_repeat 1 76 0 9 1203 339 277 140 57 chr5 81067507 81067687 -71469572 + L1MB7 LINE L1 4293 4509 -1637 9 1203 249 304 84 28 chr5 81068006 81068148 -71469111 + MLT1C LTR MaLR 318 467 0 1 1203 489 367 80 27 chr5 81068154 81068703 -71468556 + L1MB7 LINE L1 4557 5134 -1012 9 1203 342 0 0 0 chr5 81069073 81069111 -71468148 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1203 454 295 25 15 chr5 81069145 81069214 -71468045 + L1MB7 LINE L1 5352 5420 -758 9 1203 6667 36 1 0 chr5 81069214 81070010 -71467249 + L1Md_A LINE L1 5784 6580 -2 1 1203 454 302 26 16 chr5 81070010 81070159 -71467100 + L1MB7 LINE L1 5421 5572 -611 9 1203 7445 67 10 8 chr5 81070339 81071844 -71465415 - L1Md_F2 LINE L1 -12 6570 5063 1 1203 457 332 71 17 chr5 81071950 81072372 -71464887 + L1MB7 LINE L1 5652 6096 -88 9 1203 332 301 30 0 chr5 81072383 81072516 -71464743 + Lx4B LINE L1 522 658 -6428 1 1203 243 0 0 0 chr5 81072629 81072656 -71464603 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1203 1940 200 30 30 chr5 81072659 81073127 -71464132 + Lx4B LINE L1 861 1328 -5758 1 1203 16126 183 39 21 chr5 81073124 81076014 -71461245 + Lx4B LINE L1 2244 5152 -725 1 1203 5374 43 0 0 chr5 81076014 81076658 -71460601 + L1Md_T LINE L1 5939 6582 0 1 1203 16126 196 29 30 chr5 81076658 81078528 -71458731 + Lx4B LINE L1 5153 7054 -4 1 1203 6356 206 59 31 chr5 81078512 81080173 -71457086 + Lx4B LINE L1 5350 7050 0 1 1203 465 234 43 0 chr5 81080239 81080333 -71456926 + PB1D10 SINE Alu 10 107 -10 1 1203 207 0 0 0 chr5 81080333 81080356 -71456903 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1203 312 257 143 38 chr5 81080356 81080367 -71456892 + PB1 SINE Alu 119 126 -1 1 1203 4659 54 5 3 chr5 81082409 81082999 -71454260 + L1Md_F2 LINE L1 5991 6581 -1 1 1203 26 82 0 0 chr5 81084501 81084562 -71452697 + AT_rich Low_complexity Low_complexity 1 61 0 1 1203 183 42 0 0 chr5 81084610 81084634 -71452625 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1203 10928 26 0 1 chr5 81084636 81086617 -71450642 - L1Md_T LINE L1 0 6582 4603 1 1203 207 316 0 0 chr5 81087341 81087398 -71449861 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1203 443 340 62 0 chr5 81087671 81087865 -71449394 + B3 SINE B2 3 208 -8 1 1203 25 0 0 0 chr5 81089236 81089261 -71447998 + AT_rich Low_complexity Low_complexity 1 25 0 1 1203 333 0 0 0 chr5 81090423 81090460 -71446799 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1203 387 0 0 0 chr5 81090460 81090502 -71446757 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1203 408 40 0 0 chr5 81091144 81091194 -71446065 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1203 1185 152 74 0 chr5 81092673 81092784 -71444475 - Lx2 LINE L1 0 6997 6886 1 1203 405 0 0 0 chr5 81092784 81092829 -71444430 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1203 1185 152 74 0 chr5 81092829 81092934 -71444325 - Lx2 LINE L1 -112 6885 6766 1 1203 4519 148 37 6 chr5 81092924 81093715 -71443544 - Lx2 LINE L1 -353 6644 5830 1 1203 25 31 0 0 chr5 81094044 81094076 -71443183 + AT_rich Low_complexity Low_complexity 1 32 0 1 1203 286 351 0 11 chr5 81094436 81094531 -71442728 + GA-rich Low_complexity Low_complexity 3 96 0 1 1203 186 43 0 0 chr5 81095341 81095364 -71441895 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1203 202 224 0 0 chr5 81095552 81095601 -71441658 + T-rich Low_complexity Low_complexity 1 49 0 1 1203 1583 113 0 4 chr5 81095605 81095853 -71441406 - L1_Mus4 LINE L1 0 6636 6390 1 1203 426 51 0 0 chr5 81095853 81095912 -71441347 + L1_Mus4 LINE L1 6308 6366 -270 1 1203 6553 89 42 12 chr5 81096239 81096690 -71440569 - L1_Mus1 LINE L1 0 6567 6083 1 1203 3685 35 7 0 chr5 81096690 81097123 -71440136 - RLTR10C LTR ERVK 0 436 1 1 1203 6553 89 42 12 chr5 81097123 81097623 -71439636 - L1_Mus1 LINE L1 -485 6082 5587 1 1203 4305 80 0 18 chr5 81097628 81098225 -71439034 + L1_Mm LINE L1 4201 4786 -1097 1 1203 546 91 0 0 chr5 81099687 81099764 -71437495 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1203 519 267 50 0 chr5 81099772 81099892 -71437367 - RSINE1 SINE B4 -37 128 3 1 1203 314 252 0 18 chr5 81099988 81100033 -71437226 + (TA)n Simple_repeat Simple_repeat 1 44 0 1 1203 342 45 0 0 chr5 81100033 81100077 -71437182 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1203 314 252 0 18 chr5 81100077 81100144 -71437115 + (TA)n Simple_repeat Simple_repeat 1 66 0 1 1203 281 260 206 21 chr5 81100316 81100607 -71436652 - Lx9 LINE L1 0 7644 7300 1 1203 551 350 86 108 chr5 81100631 81101003 -71436256 - Lx9 LINE L1 -70 7403 7037 1 1203 333 0 0 0 chr5 81101003 81101040 -71436219 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1 1203 573 336 91 29 chr5 81101040 81101509 -71435750 - Lx9 LINE L1 -495 7149 6581 1 1203 676 178 7 7 chr5 81101548 81101695 -71435564 + CT-rich Low_complexity Low_complexity 2 148 0 1 1203 228 286 35 12 chr5 81101695 81101780 -71435479 + Lx9 LINE L1 5882 5968 -1676 1 1203 895 304 37 65 chr5 81102081 81102433 -71434826 + Lx8 LINE L1 6203 6544 -929 1 1203 21 0 0 0 chr5 81103893 81103914 -71433345 + AT_rich Low_complexity Low_complexity 1 21 0 1 1203 1097 110 0 0 chr5 81104869 81105015 -71432244 + B1_Mus2 SINE Alu 2 147 0 1 1203 369 0 0 0 chr5 81105331 81105372 -71431887 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1203 295 301 0 0 chr5 81106477 81106550 -71430709 + Lx6 LINE L1 6583 6655 -805 1 1203 1852 209 86 19 chr5 81109570 81110158 -71427101 - Lx5 LINE L1 -976 6074 5455 1 1203 423 0 0 0 chr5 81110360 81110407 -71426852 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1203 2454 113 29 3 chr5 81111573 81111955 -71425304 + L1_Mus3 LINE L1 6247 6638 0 1 1203 523 283 21 14 chr5 81111960 81112100 -71425159 + ID_B1 SINE B4 84 224 0 1 1203 211 236 18 0 chr5 81112233 81112288 -71424971 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1203 820 276 54 78 chr5 81113074 81113541 -71423718 - RMER15 LTR ERVL -17 558 1 1 1203 251 259 0 0 chr5 81114122 81114180 -71423079 - B1F1 SINE Alu -3 146 89 1 1203 27 0 0 0 chr5 81115361 81115388 -71421871 + AT_rich Low_complexity Low_complexity 1 27 0 1 1203 338 344 126 9 chr5 81116053 81116267 -71420992 + MIR SINE MIR 5 243 -19 1 1203 969 280 113 6 chr5 81116758 81117085 -71420174 - ORR1D2 LTR MaLR -3 367 6 1 1203 23 86 0 0 chr5 81117487 81117545 -71419714 + AT_rich Low_complexity Low_complexity 1 58 0 1 1203 237 366 36 62 chr5 81117726 81117921 -71419338 - MLT1F-int LTR MaLR -34 1455 1266 1 1203 225 385 29 40 chr5 81118300 81118473 -71418786 - MLT1F-int LTR MaLR -575 834 664 1 1203 7765 40 0 0 chr5 81118481 81119404 -71417855 - L1Md_T LINE L1 0 6582 5660 1 1203 1791 228 29 24 chr5 81119564 81120014 -71417245 - Lx4B LINE L1 -7 7051 6600 1 1203 309 68 0 0 chr5 81120369 81120413 -71416846 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1203 186 133 0 0 chr5 81120504 81120534 -71416725 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1 1203 985 157 71 0 chr5 81121020 81121217 -71416042 - L1VL4 LINE L1 -1410 2149 1939 1 1203 279 0 0 0 chr5 81121651 81121682 -71415577 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1203 5832 136 25 20 chr5 81121682 81121889 -71415370 - L1VL4 LINE L1 -1606 1953 1748 1 1203 2765 104 5 2 chr5 81121889 81122286 -71414973 - MTB LTR MaLR 0 400 3 1 1203 5832 139 21 16 chr5 81122286 81123400 -71413859 - L1VL4 LINE L1 -1812 1747 626 1 1203 4923 126 33 11 chr5 81123399 81123928 -71413331 + MusHAL1 LINE L1 1313 1849 -863 1 1203 228 35 0 0 chr5 81123928 81123957 -71413302 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1203 4923 126 33 11 chr5 81123957 81124283 -71412976 + MusHAL1 LINE L1 1850 2186 -526 1 1203 4355 202 34 21 chr5 81124288 81124357 -71412902 + Lx2 LINE L1 4910 4994 -892 1 1203 1338 151 49 0 chr5 81124357 81124582 -71412677 + Lx2 LINE L1 6747 6982 -15 1 1203 342 0 0 0 chr5 81124582 81124620 -71412639 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1 1203 7494 169 33 38 chr5 81124620 81126659 -71410600 + Lx2 LINE L1 4995 6997 0 1 1203 318 327 28 11 chr5 81126693 81126829 -71410430 - B1_Mur2 SINE Alu -9 138 5 1 1203 240 111 0 0 chr5 81127028 81127064 -71410195 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1203 411 21 0 0 chr5 81127077 81127125 -71410134 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 1 1203 304 23 0 0 chr5 81127128 81127171 -71410088 - L1_Mus2 LINE L1 0 6566 6524 1 1203 981 103 0 0 chr5 81127172 81127308 -71409951 - B1_Mus1 SINE Alu -12 136 1 1 1203 378 0 0 0 chr5 81127679 81127721 -71409538 + (TAA)n Simple_repeat Simple_repeat 1 42 0 1 1203 219 36 0 0 chr5 81129206 81129234 -71408025 + (GTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1203 362 56 67 11 chr5 81129268 81129352 -71407907 + (TTTG)n Simple_repeat Simple_repeat 4 92 0 1 1203 1070 76 21 0 chr5 81129352 81129496 -71407763 - B1_Mus2 SINE Alu 0 147 1 1 1203 249 241 0 0 chr5 81130454 81130508 -71406751 - PB1D10 SINE Alu 0 117 64 1 1203 331 313 0 0 chr5 81130690 81130789 -71406470 + (TGGA)n Simple_repeat Simple_repeat 3 101 0 1 1203 790 309 20 4 chr5 81131726 81131970 -71405289 + MTD LTR MaLR 4 251 -168 1 1203 296 279 310 14 chr5 81131996 81132197 -71405062 + MTC-int LTR MaLR 45 306 -952 1 1203 1317 68 0 6 chr5 81132199 81132216 -71405043 - B2_Mm2 SINE B2 -19 176 160 1 1203 180 0 0 0 chr5 81132216 81132236 -71405023 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1 1203 1317 68 0 6 chr5 81132236 81132395 -71404864 - B2_Mm2 SINE B2 -36 159 1 1 1203 1112 274 21 14 chr5 81132395 81132676 -71404583 + MTC-int LTR MaLR 296 578 -680 1 1204 690 13 0 0 chr5 81134345 81134424 -71402835 + (TG)n Simple_repeat Simple_repeat 2 80 0 1 1204 484 298 25 44 chr5 81135597 81135755 -71401504 + B3 SINE B2 1 155 -61 1 1204 21 0 0 0 chr5 81137157 81137178 -71400081 + AT_rich Low_complexity Low_complexity 1 21 0 1 1204 250 261 0 0 chr5 81137291 81137337 -71399922 - MER50 LTR ERV1 -58 676 631 1 1204 358 20 0 38 chr5 81138434 81138487 -71398772 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1204 349 198 8 8 chr5 81138488 81138610 -71398649 + (TG)n Simple_repeat Simple_repeat 1 122 0 1 1204 193 53 51 26 chr5 81140324 81140363 -71396896 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1 1204 318 26 0 0 chr5 81141931 81141970 -71395289 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1204 26 0 0 0 chr5 81142190 81142216 -71395043 + AT_rich Low_complexity Low_complexity 1 26 0 1 1204 242 180 16 0 chr5 81142216 81142277 -71394982 + CT-rich Low_complexity Low_complexity 5 66 0 1 1204 8899 118 26 10 chr5 81142421 81143457 -71393802 - Lx3A LINE L1 -5 6976 5921 1 1204 531 0 0 0 chr5 81143457 81143516 -71393743 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1204 387 0 0 0 chr5 81143516 81143558 -71393701 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1204 8899 107 7 4 chr5 81143558 81144378 -71392881 - Lx3A LINE L1 -1061 5920 5098 1 1204 299 238 36 0 chr5 81145215 81145299 -71391960 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1204 311 243 14 0 chr5 81145698 81145768 -71391491 + MLT2B4 LTR ERVL 10 80 -476 1 1204 518 300 17 50 chr5 81145834 81146013 -71391246 - ID_B1 SINE B4 -3 221 49 1 1204 234 202 55 22 chr5 81146013 81146104 -71391155 + T-rich Low_complexity Low_complexity 3 96 0 1 1204 5597 179 59 11 chr5 81146107 81147159 -71390100 - Lx4A LINE L1 -2 7056 5955 2 1204 1225 143 62 0 chr5 81147166 81147375 -71389884 - Lx2 LINE L1 0 6997 6776 2 1204 5284 178 58 8 chr5 81147376 81148411 -71388848 - Lx2 LINE L1 -355 6642 5588 2 1204 531 0 0 0 chr5 81148799 81148858 -71388401 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1204 321 47 0 0 chr5 81148858 81148900 -71388359 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1204 309 323 103 8 chr5 81149093 81149355 -71387904 + Lx8 LINE L1 7211 7626 -18 2 1204 317 250 13 0 chr5 81149416 81149492 -71387767 + L1M5 LINE L1 4008 4084 -2062 2 1204 1002 33 0 0 chr5 81149656 81149778 -71387481 + (TG)n Simple_repeat Simple_repeat 2 123 0 2 1204 220 373 58 22 chr5 81150875 81151012 -71386247 - L2 LINE L2 -654 2765 2624 2 1204 564 221 21 168 chr5 81151059 81151249 -71386010 - MTC LTR MaLR -8 413 252 2 1204 30714 93 16 3 chr5 81151249 81156249 -71381010 + L1Md_F2 LINE L1 518 5586 -297 2 1204 7422 67 12 4 chr5 81156249 81157237 -71380022 + L1Md_F2 LINE L1 5587 6582 0 2 1204 957 229 130 15 chr5 81157242 81157504 -71379755 - MTC LTR MaLR -129 292 1 2 1204 227 282 26 0 chr5 81158188 81158266 -71378993 - L1M2 LINE L1 -908 5235 5156 2 1204 11391 176 32 113 chr5 81158321 81160136 -71377123 - L1_Mur2 LINE L1 -106 5771 4013 2 1204 240 253 141 11 chr5 81160136 81160228 -71377031 - MLT1C LTR MaLR -53 414 311 2 1204 11391 176 32 113 chr5 81160228 81160317 -71376942 - L1_Mur2 LINE L1 -106 4012 3925 2 1204 1220 101 39 0 chr5 81160317 81160495 -71376764 + L1_Mus1 LINE L1 6383 6567 0 2 1204 11391 176 32 113 chr5 81160495 81160591 -71376668 - L1_Mur2 LINE L1 -1953 3924 3924 2 1204 2266 133 41 8 chr5 81160591 81160985 -71376274 + L1_Mus4 LINE L1 6220 6626 -10 2 1204 11391 176 32 113 chr5 81160985 81161878 -71375381 - L1_Mur2 LINE L1 -1953 3924 3027 2 1204 5693 209 30 16 chr5 81161905 81161953 -71375306 + Lx5 LINE L1 4576 4623 -1254 2 1204 197 0 71 0 chr5 81161953 81161981 -71375278 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1204 5693 209 30 16 chr5 81161981 81162621 -71374638 + Lx5 LINE L1 4624 5287 -590 2 1204 3049 51 10 5 chr5 81162621 81163016 -71374243 + L1Md_F3 LINE L1 6186 6582 -2 2 1204 5693 223 54 20 chr5 81163016 81164705 -71372554 + Lx5 LINE L1 5288 7048 -2 2 1204 229 200 22 0 chr5 81164740 81164785 -71372474 - MLT2D LTR ERVL -368 46 1 2 1204 1254 263 108 14 chr5 81165103 81165465 -71371794 - MTD LTR MaLR -21 398 3 2 1204 633 47 0 0 chr5 81165541 81165626 -71371633 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 2 1204 876 309 54 29 chr5 81165823 81166100 -71371159 + B4A SINE B4 6 289 -3 2 1204 226 273 23 0 chr5 81166204 81166292 -71370967 + Lx9 LINE L1 7398 7487 -157 2 1204 44 46 0 0 chr5 81166399 81166464 -71370795 + AT_rich Low_complexity Low_complexity 1 65 0 2 1204 270 120 13 26 chr5 81166554 81166631 -71370628 + T-rich Low_complexity Low_complexity 4 79 0 2 1204 21 36 0 0 chr5 81167311 81167339 -71369920 + AT_rich Low_complexity Low_complexity 1 28 0 2 1204 193 250 98 16 chr5 81168099 81168160 -71369099 - L2 LINE L2 -2074 1345 1280 2 1204 730 273 29 39 chr5 81168250 81168456 -71368803 + B3 SINE B2 7 210 -6 2 1204 3953 190 80 10 chr5 81168789 81169529 -71367730 + RMER12 LTR ERVK 1 785 -537 2 1204 551 108 11 0 chr5 81169529 81169622 -71367637 + (TCCA)n Simple_repeat Simple_repeat 1 94 0 2 1204 3953 190 80 10 chr5 81169622 81169744 -71367515 + RMER12 LTR ERVK 786 923 -399 2 1204 322 133 0 74 chr5 81169771 81169852 -71367407 + Lx LINE L1 6580 6654 0 2 1204 719 201 0 22 chr5 81170114 81170251 -71367008 - B1_Mur4 SINE Alu -5 145 12 2 1204 786 75 0 0 chr5 81170320 81170426 -71366833 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 2 1204 734 173 0 61 chr5 81170430 81170578 -71366681 - B1_Mus1 SINE Alu -9 139 1 2 1204 38 22 0 0 chr5 81170667 81170712 -71366547 + AT_rich Low_complexity Low_complexity 1 45 0 2 1204 542 342 63 42 chr5 81171410 81171857 -71365402 + MLT1E LTR MaLR 17 479 -201 2 1204 690 381 15 7 chr5 81172118 81172388 -71364871 - B4 SINE B4 -18 274 3 2 1204 915 318 55 44 chr5 81172424 81172502 -71364757 - ORR1D2 LTR MaLR -2 368 295 2 1204 495 0 0 0 chr5 81172502 81172557 -71364702 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 2 1204 915 318 55 44 chr5 81172557 81172840 -71364419 - ORR1D2 LTR MaLR -76 294 3 2 1204 913 242 110 62 chr5 81173177 81173580 -71363679 - RMER13A LTR ERVK -75 552 113 2 1204 186 43 0 0 chr5 81173852 81173875 -71363384 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1204 467 274 18 0 chr5 81174229 81174342 -71362917 + B1F SINE Alu 35 149 0 2 1204 204 143 0 0 chr5 81175579 81175621 -71361638 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1204 189 94 0 0 chr5 81178401 81178433 -71358826 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1204 646 281 156 11 chr5 81180119 81180382 -71356877 + Lx8 LINE L1 6817 7117 -356 2 1204 203 61 30 0 chr5 81180441 81180474 -71356785 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1204 255 113 44 88 chr5 81180484 81180552 -71356707 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 2 1204 315 288 34 61 chr5 81180662 81180810 -71356449 + L1MB7 LINE L1 6040 6183 -1 2 1204 28 61 0 0 chr5 81180837 81180886 -71356373 + AT_rich Low_complexity Low_complexity 1 49 0 2 1204 25 31 0 0 chr5 81181406 81181438 -71355821 + AT_rich Low_complexity Low_complexity 1 32 0 2 1204 216 200 0 0 chr5 81181689 81181739 -71355520 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 2 1204 1206 54 0 0 chr5 81182702 81182849 -71354410 + B1_Mm SINE Alu 1 147 0 2 1204 771 11 0 0 chr5 81182852 81182940 -71354319 + (GAA)n Simple_repeat Simple_repeat 2 89 0 2 1204 285 275 43 0 chr5 81183421 81183490 -71353769 + B3A SINE B2 35 106 -92 2 1204 24 32 0 0 chr5 81184131 81184162 -71353097 + AT_rich Low_complexity Low_complexity 1 31 0 2 1204 285 29 0 0 chr5 81184529 81184563 -71352696 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2 1204 4865 128 14 13 chr5 81184563 81185338 -71351921 - Lx3_Mus LINE L1 -24 6985 6210 2 1204 1641 101 98 0 chr5 81185315 81185591 -71351668 + Lx3A LINE L1 5070 5372 -514 2 1204 1762 57 9 0 chr5 81185588 81185815 -71351444 - L1Md_F2 LINE L1 -443 6139 5911 2 1204 1553 89 13 0 chr5 81185815 81186039 -71351220 + L1Md_F2 LINE L1 6356 6582 0 2 1204 1005 108 13 13 chr5 81186040 81186199 -71351060 + Lx3A LINE L1 5363 5521 -365 2 1204 1843 113 11 3 chr5 81186231 81186515 -71350744 + Lx3A LINE L1 5908 6193 -788 2 1204 393 348 71 9 chr5 81186691 81186903 -71350356 - MIR SINE MIR -29 233 9 2 1204 267 118 40 0 chr5 81187869 81187945 -71349314 + A-rich Low_complexity Low_complexity 2 80 0 2 1204 215 354 140 9 chr5 81188723 81188937 -71348322 - MIRc SINE MIR -14 254 13 2 1204 33156 88 9 1 chr5 81189075 81194474 -71342785 - L1Md_F2 LINE L1 -12 6570 1111 2 1204 3057 52 12 51 chr5 81194474 81194903 -71342356 - L1Md_F3 LINE L1 -15 6569 6158 2 1204 5162 144 66 0 chr5 81194903 81195660 -71341599 - L1Md_F2 LINE L1 -5506 1110 321 2 1204 431 259 0 118 chr5 81195660 81195787 -71341472 + B4 SINE B4 109 220 -72 2 1204 763 176 138 5 chr5 81195877 81196065 -71341194 + Lx5 LINE L1 2362 2574 -3303 2 1204 9386 166 39 65 chr5 81196070 81196296 -71340963 + Lx5 LINE L1 3840 4058 -1819 2 1204 495 0 0 0 chr5 81196296 81196351 -71340908 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1204 447 87 0 0 chr5 81196351 81196419 -71340840 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1204 9386 166 39 65 chr5 81196419 81197123 -71340136 + Lx5 LINE L1 4059 4684 -1193 2 1204 2630 71 87 0 chr5 81197123 81197491 -71339768 - MTB LTR MaLR 0 400 1 2 1204 9386 186 51 48 chr5 81197491 81199486 -71337773 + Lx5 LINE L1 4685 6738 -312 2 1204 297 0 0 0 chr5 81199486 81199519 -71337740 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1204 597 49 0 0 chr5 81199519 81199599 -71337660 + (GA)n Simple_repeat Simple_repeat 2 82 0 2 1204 5823 214 69 24 chr5 81199599 81199877 -71337382 + Lx5 LINE L1 6739 7041 -9 2 1204 28 0 0 0 chr5 81199883 81199911 -71337348 + AT_rich Low_complexity Low_complexity 1 28 0 2 1204 383 0 0 21 chr5 81200858 81200906 -71336353 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1204 235 296 46 0 chr5 81201996 81202104 -71335155 - L1MA9 LINE L1 -1 6311 6199 2 1204 1340 262 164 28 chr5 81202302 81203273 -71333986 - L1M4b LINE L1 -4028 3306 2256 2 1204 697 67 0 0 chr5 81203333 81203422 -71333837 + RLTR10 LTR ERVK 300 388 -2 2 1204 7966 35 7 7 chr5 81203424 81204384 -71332875 + RLTR10-int LTR ERVK 1 988 -999 2 1204 8888 15 0 0 chr5 81204461 81205456 -71331803 + RLTR10-int LTR ERVK 990 1984 -3 2 1204 2955 34 7 104 chr5 81205458 81205890 -71331369 + RLTR10 LTR ERVK 1 390 0 2 1204 540 328 49 19 chr5 81206416 81206683 -71330576 + B4A SINE B4 1 275 -17 2 1204 369 0 0 0 chr5 81208285 81208326 -71328933 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1204 475 301 152 36 chr5 81208412 81208688 -71328571 - MLT1A LTR MaLR -66 308 1 2 1204 446 308 52 15 chr5 81209340 81209475 -71327784 + B1_Mur3 SINE Alu 9 148 -1 2 1204 185 0 0 39 chr5 81209480 81209506 -71327753 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1204 255 355 70 7 chr5 81209577 81209719 -71327540 + MER5A1 DNA MER1_type 7 157 -9 2 1204 813 272 9 5 chr5 81210073 81210287 -71326972 + B3 SINE B2 2 216 0 2 1204 342 0 0 0 chr5 81211037 81211075 -71326184 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 2 1204 215 392 24 40 chr5 81212465 81212590 -71324669 - MIR SINE MIR -115 147 25 2 1204 189 0 0 0 chr5 81213575 81213596 -71323663 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1204 246 338 161 34 chr5 81213850 81214055 -71323204 - RMER15 LTR ERVL 0 575 345 2 1204 726 293 104 68 chr5 81214610 81214976 -71322283 - MTEa LTR MaLR 0 379 1 2 1204 388 366 15 0 chr5 81215873 81216004 -71321255 - B1F SINE Alu -11 138 6 2 1204 207 250 19 0 chr5 81216325 81216377 -71320882 - L2c LINE L2 0 3387 3335 2 1204 408 40 0 0 chr5 81217264 81217314 -71319945 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1204 330 26 0 0 chr5 81217314 81217352 -71319907 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1204 195 0 36 91 chr5 81217526 81217581 -71319678 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 2 1204 383 313 84 8 chr5 81218378 81218639 -71318620 - L1M2 LINE L1 -1225 4918 4638 2 1204 234 175 53 0 chr5 81219504 81219561 -71317698 + L1MA6 LINE L1 6207 6266 -34 2 1204 342 305 92 58 chr5 81219655 81219829 -71317430 + B3A SINE B2 1 180 -18 2 1204 1850 325 37 64 chr5 81220123 81221051 -71316208 + Lx8 LINE L1 6346 7248 -225 2 1204 30 27 0 0 chr5 81221222 81221259 -71316000 + AT_rich Low_complexity Low_complexity 1 37 0 2 1204 511 225 167 9 chr5 81221276 81221485 -71315774 - Lx9 LINE L1 -2 7642 7401 3 1204 8763 148 21 10 chr5 81221500 81223014 -71314245 - Lx4A LINE L1 0 7058 5542 3 1204 258 304 88 9 chr5 81223127 81223240 -71314019 - MTEb LTR MaLR -2 377 256 3 1204 1105 157 21 5 chr5 81223944 81224130 -71313129 + ORR1B1 LTR MaLR 206 394 0 3 1204 496 382 18 9 chr5 81224628 81224855 -71312404 + Kanga1d DNA Tc2 82 310 -299 3 1204 333 270 150 8 chr5 81225041 81225168 -71312091 - B1_Mus2 SINE Alu 0 147 3 3 1204 274 333 85 48 chr5 81225386 81225514 -71311745 - RMER15 LTR ERVL -3 572 438 3 1204 1422 195 102 3 chr5 81225514 81225848 -71311411 - ORR1B2 LTR MaLR 0 367 1 3 1204 274 333 85 48 chr5 81225848 81225908 -71311351 - RMER15 LTR ERVL -138 437 377 3 1204 988 132 6 11 chr5 81225908 81226034 -71311225 + (GGAA)n Simple_repeat Simple_repeat 2 128 0 3 1204 1038 32 0 0 chr5 81226034 81226160 -71311099 + (GGGAA)n Simple_repeat Simple_repeat 2 127 0 3 1204 988 132 6 11 chr5 81226160 81226209 -71311050 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 3 1204 226 214 0 0 chr5 81226214 81226256 -71311003 + GA-rich Low_complexity Low_complexity 3 44 0 3 1204 305 0 50 0 chr5 81226256 81226296 -71310963 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 3 1204 370 323 56 50 chr5 81226579 81226873 -71310386 + L1M4c LINE L1 1188 1489 -5053 3 1204 198 371 75 9 chr5 81227181 81227287 -71309972 + MIRc SINE MIR 30 142 -126 3 1204 630 0 0 0 chr5 81227328 81227398 -71309861 + (TTTC)n Simple_repeat Simple_repeat 1 70 0 3 1204 24 0 0 70 chr5 81228201 81228221 -71309038 + AT_rich Low_complexity Low_complexity 1 20 0 3 1204 1118 76 0 0 chr5 81228221 81228365 -71308894 + B1_Mus2 SINE Alu 1 144 -3 3 1204 279 0 0 0 chr5 81228365 81228396 -71308863 + (TAA)n Simple_repeat Simple_repeat 2 32 0 3 1204 24 0 0 70 chr5 81228396 81228417 -71308842 + AT_rich Low_complexity Low_complexity 1 19 0 3 1204 2599 269 80 40 chr5 81228860 81229676 -71307583 - ORR1D2-int LTR MaLR -522 848 1 3 1204 1017 289 39 17 chr5 81229676 81230038 -71307221 - ORR1D2 LTR MaLR 0 370 1 3 1204 288 0 0 0 chr5 81230859 81230891 -71306368 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1204 414 0 0 0 chr5 81232006 81232052 -71305207 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1204 1315 305 5 10 chr5 81232532 81232919 -71304340 + Lx8 LINE L1 6307 6691 -782 3 1204 6728 107 56 1 chr5 81232918 81234281 -71302978 - L1_Mus3 LINE L1 0 6638 5199 3 1204 3901 124 3 5 chr5 81234268 81234882 -71302377 + L1_Mus3 LINE L1 4598 5210 -673 3 1204 1266 327 44 42 chr5 81234880 81235474 -71301785 + Lx8 LINE L1 6681 7275 -198 3 1204 1491 148 35 25 chr5 81235499 81235783 -71301476 + ORR1A4 LTR MaLR 32 318 -11 3 1204 25 31 0 0 chr5 81235918 81235950 -71301309 + AT_rich Low_complexity Low_complexity 1 32 0 3 1204 3677 234 21 13 chr5 81236111 81236907 -71300352 + Lx5 LINE L1 6207 7009 -41 3 1204 189 147 0 0 chr5 81237050 81237084 -71300175 + (TCC)n Simple_repeat Simple_repeat 3 36 0 3 1204 504 48 0 0 chr5 81237084 81237147 -71300112 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1204 1847 172 58 28 chr5 81237601 81237996 -71299263 - MTB_Mm LTR MaLR 0 407 1 3 1204 257 274 58 19 chr5 81238766 81238870 -71298389 - L1M4 LINE L1 -390 5774 5667 3 1204 419 92 0 15 chr5 81239196 81239262 -71297997 + (TTTC)n Simple_repeat Simple_repeat 3 67 0 3 1204 304 370 16 52 chr5 81239877 81240071 -71297188 + LTR41B LTR ERVL 482 668 -90 3 1204 292 340 6 109 chr5 81241120 81241285 -71295974 - RSINE1 SINE B4 0 165 18 3 1204 196 72 52 35 chr5 81242829 81242887 -71294372 + A-rich Low_complexity Low_complexity 2 60 0 3 1204 1189 267 102 3 chr5 81243157 81243491 -71293768 - Lx6 LINE L1 -12 7448 7082 3 1204 4005 36 0 0 chr5 81243493 81243964 -71293295 - L1_Mm LINE L1 0 5883 5413 3 1204 248 229 16 0 chr5 81244304 81244365 -71292894 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1204 1975 123 10 0 chr5 81244655 81244965 -71292294 - MusHAL1 LINE L1 -1367 1345 1033 3 1204 680 285 139 34 chr5 81245008 81245360 -71291899 - Lx8 LINE L1 -5 7468 7080 3 1204 285 253 85 37 chr5 81245984 81246066 -71291193 + RSINE1 SINE B4 11 96 -69 3 1204 1465 246 63 21 chr5 81246066 81246494 -71290765 + RMER1C Other Other 896 1341 -1 3 1204 44 20 0 0 chr5 81246544 81246595 -71290664 + AT_rich Low_complexity Low_complexity 1 51 0 3 1204 3061 245 78 10 chr5 81246630 81247446 -71289813 + Lx9 LINE L1 6771 7642 -2 3 1204 515 315 18 78 chr5 81249440 81249657 -71287602 - B3 SINE B2 -12 204 1 3 1204 723 261 16 11 chr5 81249761 81249947 -71287312 + MER5A DNA MER1_type 3 189 0 3 1204 442 303 58 35 chr5 81249955 81250126 -71287133 - MER5B DNA MER1_type 0 178 4 3 1204 3443 28 2 0 chr5 81250783 81251178 -71286081 - MTA_Mm LTR MaLR 0 396 1 3 1204 240 353 101 68 chr5 81251652 81252047 -71285212 - L2 LINE L2 -363 3056 2649 3 1204 256 359 98 79 chr5 81252985 81253363 -71283896 + MLT1K LTR MaLR 194 578 -17 3 1204 239 282 120 76 chr5 81253750 81253842 -71283417 + MER103 DNA DNA 36 131 -35 3 1204 22 0 0 0 chr5 81254786 81254808 -71282451 + AT_rich Low_complexity Low_complexity 1 22 0 3 1204 2587 306 120 15 chr5 81254827 81255978 -71281281 - Lx8 LINE L1 -2 7471 6200 3 1204 714 270 65 28 chr5 81255992 81256316 -71280943 - L1_Rod LINE L1 -338 5509 5174 3 1204 1942 146 3 68 chr5 81258681 81259033 -71278226 - ORR1A4 LTR MaLR 0 329 1 3 1204 3364 91 124 11 chr5 81259623 81260148 -71277111 + MT2B2 LTR ERVL 1 584 0 3 1204 279 339 102 53 chr5 81260730 81260917 -71276342 - LTR88c LTR Genie? -650 212 17 3 1204 2047 172 3 39 chr5 81261652 81262033 -71275226 - ORR1B2 LTR MaLR 0 367 1 3 1204 1173 208 147 59 chr5 81262386 81262536 -71274723 - RMER19C LTR ERVK -278 333 198 3 1204 1421 126 0 29 chr5 81262536 81262781 -71274478 - Lx LINE L1 0 6654 6417 3 1204 1173 208 147 59 chr5 81262781 81262936 -71274323 - RMER19C LTR ERVK -414 197 1 3 1204 829 221 49 29 chr5 81262996 81263201 -71274058 - Lx5 LINE L1 -682 6368 6160 3 1204 1320 140 5 5 chr5 81263199 81263422 -71273837 + Lx5 LINE L1 4158 4380 -1497 3 1204 786 194 7 0 chr5 81263425 81263569 -71273690 + RLTR11A LTR ERVK 4 148 -380 3 1204 1338 146 83 4 chr5 81263555 81263795 -71273464 + RLTR11A LTR ERVK 270 528 0 3 150 6113 192 74 27 chr5 81263795 81265485 -71271774 + Lx5 LINE L1 4375 6162 -888 3 1205 253 277 15 0 chr5 81265653 81265718 -71271541 - MLT2D LTR ERVL 0 560 495 3 1205 3761 42 15 19 chr5 81265883 81266364 -71270895 - L1Md_F2 LINE L1 -1 6581 6103 3 1205 4107 64 2 0 chr5 81266364 81266909 -71270350 + L1_Mm LINE L1 3898 4443 -1440 3 1205 380 42 0 0 chr5 81266908 81266956 -71270303 + L1_Mm LINE L1 5333 5380 -503 3 1205 553 335 71 34 chr5 81266956 81267225 -71270034 - MT2A LTR ERVL -254 279 1 3 1205 2226 280 29 37 chr5 81267821 81268649 -71268610 + Lx7 LINE L1 4839 5659 -221 3 1205 2324 324 40 14 chr5 81268642 81269572 -71267687 + Lx7 LINE L1 5833 6786 -910 3 1205 533 283 13 0 chr5 81269577 81269729 -71267530 + Lx7 LINE L1 7182 7335 -361 3 1205 273 29 0 0 chr5 81270370 81270404 -71266855 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1205 232 197 81 16 chr5 81271758 81271820 -71265439 + MLT2B4 LTR ERVL 231 296 -260 3 1205 653 320 0 0 chr5 81272350 81272503 -71264756 + RSINE1 SINE B4 3 155 -10 3 1205 483 18 0 0 chr5 81272519 81272575 -71264684 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1205 216 0 0 0 chr5 81272785 81272809 -71264450 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 3 1205 40457 17 1 6 chr5 81273065 81279445 -71257814 - L1Md_A LINE L1 0 6582 244 3 1205 438 20 0 0 chr5 81279518 81279569 -71257690 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1205 288 0 0 0 chr5 81280195 81280227 -71257032 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 1205 374 211 18 0 chr5 81282435 81282544 -71254715 - Lx9 LINE L1 -1 7643 7533 3 1205 215 389 45 11 chr5 81283230 81283407 -71253852 - L2 LINE L2 -467 2952 2770 3 1205 625 312 6 25 chr5 81284574 81284735 -71252524 + RSINE1 SINE B4 8 165 0 3 1205 212 377 87 20 chr5 81284735 81284769 -71252490 + B3 SINE B2 7 214 -2 3 1205 548 301 20 0 chr5 81284791 81284937 -71252322 + B1_Mur2 SINE Alu 1 149 0 3 1205 24 0 0 0 chr5 81285730 81285754 -71251505 + AT_rich Low_complexity Low_complexity 1 24 0 3 1205 537 214 111 0 chr5 81285754 81285880 -71251379 - B1F2 SINE Alu -6 143 4 3 1205 25 31 0 0 chr5 81287150 81287182 -71250077 + AT_rich Low_complexity Low_complexity 1 32 0 3 1205 816 85 44 24 chr5 81288001 81288343 -71248916 + (TG)n Simple_repeat Simple_repeat 1 349 0 3 1205 866 298 12 12 chr5 81288816 81289071 -71248188 - Lx6 LINE L1 -27 7433 7179 3 1205 470 0 50 0 chr5 81289651 81289711 -71247548 + (TTATA)n Simple_repeat Simple_repeat 2 64 0 3 1205 947 9 9 0 chr5 81289873 81289985 -71247274 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 3 1205 195 42 0 0 chr5 81289987 81290011 -71247248 + (CAGAGA)n Simple_repeat Simple_repeat 1 24 0 3 1205 695 277 80 0 chr5 81290021 81290209 -71247050 - Lx7 LINE L1 -1005 6691 6489 3 1205 855 223 87 9 chr5 81290230 81290461 -71246798 + Lx7 LINE L1 7447 7695 -1 3 1205 31 82 0 0 chr5 81290724 81290797 -71246462 + AT_rich Low_complexity Low_complexity 1 73 0 3 1205 258 57 37 19 chr5 81290951 81291005 -71246254 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 3 1205 373 346 168 25 chr5 81291118 81291512 -71245747 + L2 LINE L2 2617 3066 -353 3 1205 213 39 0 0 chr5 81291587 81291613 -71245646 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 1205 2148 121 12 0 chr5 81291620 81291943 -71245316 + ORR1A2 LTR MaLR 1 327 0 3 1205 213 108 0 0 chr5 81292701 81292738 -71244521 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1205 317 269 28 46 chr5 81292896 81293005 -71244254 + MLT1D LTR MaLR 27 133 -372 3 1205 333 0 0 0 chr5 81293241 81293278 -71243981 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1205 459 35 0 0 chr5 81293520 81293577 -71243682 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1205 519 17 0 0 chr5 81294075 81294135 -71243124 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1205 368 341 14 21 chr5 81294139 81294280 -71242979 - B4A SINE B4 -28 264 125 4 1205 244 254 72 29 chr5 81294322 81294391 -71242868 + B3A SINE B2 9 80 -118 4 1205 1615 131 69 0 chr5 81294544 81294835 -71242424 - Lx2 LINE L1 0 6997 6687 4 1205 313 148 0 0 chr5 81294835 81294889 -71242370 + Lx2 LINE L1 6147 6200 -797 4 1205 2645 241 91 3 chr5 81295031 81295636 -71241623 - Lx6 LINE L1 -8 7452 6795 4 1205 2742 213 9 3 chr5 81295629 81296199 -71241060 - L1_Mur3 LINE L1 -3 5877 5305 4 1205 373 130 0 49 chr5 81297440 81297521 -71239738 + (CATA)n Simple_repeat Simple_repeat 3 79 0 4 1205 247 261 30 30 chr5 81297880 81297947 -71239312 + MTEa LTR MaLR 278 344 -35 4 1205 328 280 143 36 chr5 81298010 81298206 -71239053 + Tigger5 DNA MER2_type 2186 2402 -4 4 1205 24 32 0 0 chr5 81298278 81298309 -71238950 + AT_rich Low_complexity Low_complexity 1 31 0 4 1205 195 327 55 55 chr5 81299176 81299286 -71237973 + MIRm SINE MIR 27 136 -140 4 1205 270 0 0 0 chr5 81301316 81301346 -71235913 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1205 2682 192 32 87 chr5 81301373 81302064 -71235195 + RMER6C LTR ERVK 1 653 -37 4 1205 895 248 66 0 chr5 81302107 81302305 -71234954 - ID_B1 SINE B4 -3 221 11 4 1205 21 36 0 0 chr5 81302323 81302351 -71234908 + AT_rich Low_complexity Low_complexity 1 28 0 4 1205 2105 81 14 0 chr5 81302587 81302872 -71234387 - L1_Mus1 LINE L1 0 6567 6279 4 1205 201 307 102 0 chr5 81303273 81303361 -71233898 - MER5A DNA MER1_type -83 106 10 4 1205 23 0 0 0 chr5 81304126 81304149 -71233110 + AT_rich Low_complexity Low_complexity 1 23 0 4 1205 332 390 62 26 chr5 81304576 81304768 -71232491 + MER44D DNA MER2_type 1 199 -506 4 1205 722 272 21 29 chr5 81304787 81305026 -71232233 + MER44D DNA MER2_type 468 704 -1 4 1205 234 103 16 79 chr5 81306329 81306392 -71230867 + T-rich Low_complexity Low_complexity 3 61 0 4 1205 280 351 46 26 chr5 81306550 81306702 -71230557 - MIR SINE MIR -2 260 106 4 1205 371 361 44 122 chr5 81307018 81307362 -71229897 - MLT1J1 LTR MaLR -127 317 1 4 1205 1185 204 48 0 chr5 81307528 81307734 -71229525 - MTC LTR MaLR -52 369 154 4 1205 1495 230 102 0 chr5 81307791 81308222 -71229037 - L1_Mur3 LINE L1 -3504 2376 1902 4 1205 250 0 0 0 chr5 81308216 81308245 -71229014 - L1_Mur3 LINE L1 -4036 1844 1816 4 1205 428 300 27 0 chr5 81308282 81308432 -71228827 - L1_Mur3 LINE L1 -7173 555 402 4 1205 333 265 38 175 chr5 81308568 81308751 -71228508 + L1MC2 LINE L1 5908 6065 -279 4 1205 467 217 38 30 chr5 81308780 81308913 -71228346 + Lx7 LINE L1 7563 7696 0 4 1205 326 376 0 21 chr5 81308910 81309103 -71228156 + L1MC2 LINE L1 6105 6293 -51 4 1205 228 372 112 36 chr5 81309214 81309518 -71227741 - MLT1J1-int LTR MaLR -358 1029 703 4 1205 465 342 149 33 chr5 81310262 81310537 -71226722 - MLT1J1-int LTR MaLR -979 408 102 4 1205 486 0 0 0 chr5 81310715 81310769 -71226490 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 4 1205 5048 79 29 11 chr5 81310853 81311570 -71225689 - L1Md_F2 LINE L1 -7 6575 5846 4 1205 358 309 12 0 chr5 81311810 81311894 -71225365 + RSINE1 SINE B4 47 131 -34 4 1205 718 290 129 33 chr5 81313458 81313822 -71223437 + Lx7 LINE L1 6924 7322 -374 4 1205 183 42 0 0 chr5 81313856 81313880 -71223379 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1205 324 0 0 0 chr5 81313894 81313930 -71223329 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1205 210 37 0 0 chr5 81314712 81314739 -71222520 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1205 477 0 0 0 chr5 81315254 81315307 -71221952 + (T)n Simple_repeat Simple_repeat 1 53 0 4 1205 267 104 0 0 chr5 81315424 81315472 -71221787 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1205 669 306 5 31 chr5 81318080 81318272 -71218987 - B3 SINE B2 -5 211 25 4 1205 4756 228 42 8 chr5 81318895 81319970 -71217289 - Lx5 LINE L1 0 7050 5940 4 1205 4723 80 13 40 chr5 81321621 81322300 -71214959 - L1_Mus2 LINE L1 -4 6562 5902 4 1205 1709 24 14 0 chr5 81322301 81322509 -71214750 + L1_Mus2 LINE L1 5671 5881 -757 4 1205 210 328 29 43 chr5 81322512 81322582 -71214677 + PB1D10 SINE Alu 16 84 -33 4 1205 655 60 0 0 chr5 81322697 81322781 -71214478 + U6 snRNA snRNA 24 107 0 4 1205 19440 156 7 10 chr5 81322781 81325726 -71211533 + L1_Mm LINE L1 1705 4627 -1256 4 1205 510 17 0 0 chr5 81325726 81325785 -71211474 + (TAA)n Simple_repeat Simple_repeat 2 60 0 4 1205 19440 156 7 10 chr5 81325785 81326361 -71210898 + L1_Mm LINE L1 4628 5213 -670 4 1205 511 72 0 15 chr5 81326373 81326461 -71210798 - Lx LINE L1 -27 6627 6527 4 1205 702 91 0 0 chr5 81327009 81327108 -71210151 + (TG)n Simple_repeat Simple_repeat 2 100 0 4 1205 207 100 0 0 chr5 81327856 81327886 -71209373 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1205 287 321 15 22 chr5 81328154 81328291 -71208968 + L1MB8 LINE L1 4732 4867 -1279 4 1205 301 335 78 29 chr5 81328385 81328719 -71208540 + L1MB8 LINE L1 5436 5790 -394 4 1205 369 62 0 0 chr5 81328719 81328767 -71208492 + (TA)n Simple_repeat Simple_repeat 1 48 0 4 1205 301 326 72 32 chr5 81328767 81328985 -71208274 + L1MB8 LINE L1 5791 6019 -159 4 1205 1322 95 11 0 chr5 81329348 81329537 -71207722 + B2_Mm1t SINE B2 2 192 -1 4 1205 546 91 0 0 chr5 81329539 81329616 -71207643 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 4 1205 378 0 0 0 chr5 81330828 81330870 -71206389 + (TTCCC)n Simple_repeat Simple_repeat 4 45 0 4 1205 310 285 46 105 chr5 81330872 81330912 -71206347 - L1MD2 LINE L1 -6377 170 137 4 1205 2308 109 34 21 chr5 81330912 81331296 -71205963 - L1_Mus3 LINE L1 -6 6632 6244 4 1205 310 285 46 105 chr5 81331296 81331408 -71205851 - L1MD2 LINE L1 -6411 136 27 4 1205 1363 256 75 41 chr5 81331557 81331972 -71205287 + Lx6 LINE L1 6393 6821 -639 4 1205 387 266 9 0 chr5 81331971 81332080 -71205179 + Lx6 LINE L1 7174 7283 -177 4 1205 381 43 0 0 chr5 81332109 81332156 -71205103 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1205 261 57 0 0 chr5 81332156 81332191 -71205068 + (GGA)n Simple_repeat Simple_repeat 2 36 0 4 1205 4412 122 23 14 chr5 81332191 81332892 -71204367 + Lx3B LINE L1 6262 6968 -5 4 1205 438 20 0 0 chr5 81332896 81332947 -71204312 + (TAA)n Simple_repeat Simple_repeat 1 51 0 4 1205 212 222 0 14 chr5 81332970 81333043 -71204216 + GA-rich Low_complexity Low_complexity 4 75 0 4 1205 30 27 0 0 chr5 81334861 81334898 -71202361 + AT_rich Low_complexity Low_complexity 1 37 0 4 1205 180 0 0 0 chr5 81335418 81335438 -71201821 + (TA)n Simple_repeat Simple_repeat 2 21 0 4 1205 1922 116 91 9 chr5 81335770 81336100 -71201159 - Lx3_Mus LINE L1 -5 7004 6648 4 1205 327 239 93 36 chr5 81336114 81336253 -71201006 - L1_Rod LINE L1 -3452 2395 2249 4 1205 631 241 26 36 chr5 81336257 81336451 -71200808 - L1M3 LINE L1 -389 5794 5603 4 1205 4760 82 37 9 chr5 81336451 81337126 -71200133 - L1_Mus2 LINE L1 0 6566 5873 4 1205 588 200 0 0 chr5 81337144 81337254 -71200005 - L1_Rod LINE L1 -3581 2266 2157 4 1205 311 322 141 0 chr5 81337523 81337644 -71199615 + ID_B1 SINE B4 86 223 -1 4 1205 398 354 0 12 chr5 81338159 81338325 -71198934 - RSINE1 SINE B4 0 165 2 4 1205 3002 92 19 0 chr5 81338905 81339328 -71197931 + Lx3_Mus LINE L1 6104 6534 -475 4 1205 4310 69 2 0 chr5 81339433 81339982 -71197277 - L1_Mus1 LINE L1 0 6567 6018 4 1205 23 78 0 0 chr5 81340308 81340359 -71196900 + AT_rich Low_complexity Low_complexity 1 51 0 4 1205 2870 107 18 22 chr5 81340360 81340810 -71196449 + Lx3_Mus LINE L1 6543 6990 -19 4 1205 7567 51 37 4 chr5 81340831 81341823 -71195436 - L1Md_F2 LINE L1 -12 6570 5540 4 1205 356 292 36 114 chr5 81344382 81344548 -71192711 + B4A SINE B4 35 187 -105 4 1205 212 297 16 0 chr5 81344779 81344843 -71192416 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1205 925 266 32 22 chr5 81345087 81345364 -71191895 - Lx6 LINE L1 -2 7458 7179 4 1205 227 257 39 39 chr5 81345469 81345546 -71191713 - Lx5 LINE L1 -286 6764 6688 4 1205 281 26 26 0 chr5 81346326 81346364 -71190895 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1205 1665 70 0 0 chr5 81346596 81346809 -71190450 + L1Md_F2 LINE L1 6074 6286 -296 4 1205 270 81 0 0 chr5 81347337 81347374 -71189885 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1205 275 270 0 45 chr5 81347406 81347472 -71189787 - ID_B1 SINE B4 -63 161 99 4 1205 292 254 130 27 chr5 81348097 81348243 -71189016 - L1MC2 LINE L1 -291 6053 5893 4 1205 843 278 39 66 chr5 81349943 81350278 -71186981 - RLTR18 LTR ERVK 0 616 291 4 1205 225 65 0 0 chr5 81350449 81350480 -71186779 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 4 1205 206 103 0 49 chr5 81350531 81350572 -71186687 + A-rich Low_complexity Low_complexity 3 41 0 4 1205 249 227 0 0 chr5 81350576 81350620 -71186639 - RLTR18 LTR ERVK -564 52 9 4 1205 180 0 0 0 chr5 81350962 81350982 -71186277 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 4 1205 906 300 68 59 chr5 81350996 81351573 -71185686 + L1MB8 LINE L1 5560 6141 -37 4 1205 250 356 35 0 chr5 81353013 81353100 -71184159 + PB1D7 SINE Alu 23 112 -8 4 1205 669 58 0 0 chr5 81353203 81353289 -71183970 + (TAG)n Simple_repeat Simple_repeat 2 87 0 4 1205 1724 48 0 0 chr5 81353459 81353668 -71183591 - L1_Mus1 LINE L1 -726 5841 5633 4 1205 349 48 0 0 chr5 81353666 81353708 -71183551 + L1_Mus1 LINE L1 5848 5889 -678 4 1205 4081 76 4 0 chr5 81353708 81354236 -71183023 + L1_Mus1 LINE L1 6036 6565 -2 4 1205 396 327 74 89 chr5 81355345 81355681 -71181578 - ORR1E LTR MaLR -20 339 9 4 1205 550 240 0 0 chr5 81355824 81355924 -71181335 + B1_Mur1 SINE Alu 27 126 -23 4 1205 22 35 0 0 chr5 81355987 81356016 -71181243 + AT_rich Low_complexity Low_complexity 1 29 0 4 1205 270 270 0 0 chr5 81356162 81356225 -71181034 + B3 SINE B2 2 64 -152 4 1205 1903 57 11 8 chr5 81356225 81356488 -71180771 - L1Md_F2 LINE L1 -3 6579 6316 4 1205 2520 65 0 3 chr5 81356488 81356810 -71180449 + L1_Mm LINE L1 5287 5607 -276 4 1205 679 277 0 25 chr5 81356810 81356973 -71180286 + B3 SINE B2 54 212 -4 4 1205 366 23 0 0 chr5 81357781 81357824 -71179435 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1205 188 345 0 18 chr5 81357900 81357956 -71179303 - MIR SINE MIR -177 85 31 4 1205 1165 150 37 14 chr5 81357974 81358190 -71179069 - URR1B DNA MER1_type 0 225 5 4 1205 334 330 92 0 chr5 81359741 81359914 -71177345 + MIRb SINE MIR 78 266 -2 4 1205 582 302 50 64 chr5 81360302 81360504 -71176755 + LFSINE_Vert SINE SINE 90 288 -171 5 1205 264 30 0 0 chr5 81360917 81360950 -71176309 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1205 440 337 143 0 chr5 81361599 81361774 -71175485 + ID_B1 SINE B4 16 215 -9 5 1205 245 272 12 36 chr5 81361798 81361882 -71175377 + GA-rich Low_complexity Low_complexity 4 85 0 5 1205 22 0 0 0 chr5 81361984 81362006 -71175253 + AT_rich Low_complexity Low_complexity 1 22 0 5 1205 1633 139 36 0 chr5 81363014 81363295 -71173964 - Lx2A1 LINE L1 -1 7007 6717 5 1205 255 170 0 0 chr5 81363363 81363410 -71173849 + (CATA)n Simple_repeat Simple_repeat 2 48 0 5 1205 12363 34 63 10 chr5 81364182 81366464 -71170795 - L1Md_F2 LINE L1 -1 6581 4188 5 1205 225 0 0 0 chr5 81367420 81367445 -71169814 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 5 1205 405 235 224 77 chr5 81368859 81369002 -71168257 + RSINE1 SINE B4 2 165 0 5 1205 234 156 0 0 chr5 81369003 81369048 -71168211 + GA-rich Low_complexity Low_complexity 3 47 0 5 1205 516 333 52 21 chr5 81369822 81370015 -71167244 + Tigger5 DNA MER2_type 25 223 -2183 5 1205 8038 41 1 6 chr5 81370017 81371006 -71166253 - L1Md_F3 LINE L1 -14 6570 5587 5 1205 955 262 137 37 chr5 81371778 81372158 -71165101 + MTD LTR MaLR 2 419 0 5 1205 198 0 0 0 chr5 81372297 81372319 -71164940 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1205 296 399 48 18 chr5 81372487 81372653 -71164606 + Tigger7 DNA MER2_type 123 293 -2198 5 1205 1835 261 74 72 chr5 81373232 81374006 -71163253 - RLTR40 LTR ERVK -40 777 3 5 1205 341 268 0 0 chr5 81374198 81374280 -71162979 + RSINE1 SINE B4 11 92 -73 5 1205 315 0 0 0 chr5 81374384 81374419 -71162840 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1205 375 315 184 5 chr5 81375681 81375882 -71161377 + RMER15 LTR ERVL 336 572 -3 5 1205 1167 190 19 0 chr5 81376616 81376821 -71160438 - B3 SINE B2 -6 210 2 5 1205 392 264 92 36 chr5 81377014 81377210 -71160049 + Lx6 LINE L1 7249 7455 -5 5 1205 22 0 0 0 chr5 81377210 81377232 -71160027 + AT_rich Low_complexity Low_complexity 1 22 0 5 1205 765 186 83 0 chr5 81377544 81377737 -71159522 + Lx9 LINE L1 7369 7577 -67 5 1205 2143 141 0 3 chr5 81377741 81378061 -71159198 - ORR1A2 LTR MaLR -8 319 1 5 1205 10074 158 52 7 chr5 81378061 81379940 -71157319 - ORR1A2-int LTR MaLR 0 1963 1 5 1205 2047 87 83 0 chr5 81379944 81380233 -71157026 - ORR1A2 LTR MaLR -8 319 7 5 1205 1417 286 41 60 chr5 81380662 81381200 -71156059 + RMER1B Other Other 32 525 -541 5 1205 1551 272 93 12 chr5 81381204 81381963 -71155296 + RMER1A Other Other 2 486 -544 5 1205 3217 215 77 2 chr5 81382470 81383235 -71154024 + RMER1A Other Other 275 1015 -15 5 1205 23 0 0 0 chr5 81383255 81383278 -71153981 + AT_rich Low_complexity Low_complexity 1 23 0 5 1205 449 303 40 33 chr5 81383892 81384204 -71153055 + L1M3c LINE L1 960 1267 -4864 5 1205 201 306 0 16 chr5 81384204 81384267 -71152992 + GA-rich Low_complexity Low_complexity 4 65 0 5 1205 218 256 0 0 chr5 81384221 81384264 -71152995 + polypurine Low_complexity Low_complexity 3 45 0 5 1205 24 32 0 0 chr5 81384302 81384333 -71152926 + AT_rich Low_complexity Low_complexity 1 31 0 5 1205 31 26 0 0 chr5 81384351 81384389 -71152870 + AT_rich Low_complexity Low_complexity 1 38 0 5 1205 221 180 20 0 chr5 81384488 81384538 -71152721 + GA-rich Low_complexity Low_complexity 2 52 0 5 1205 443 168 32 8 chr5 81384618 81384632 -71152627 + polypurine Low_complexity Low_complexity 2 15 0 5 1205 1048 112 0 16 chr5 81384632 81384814 -71152445 + (GGGAA)n Simple_repeat Simple_repeat 2 180 0 5 1205 443 168 32 8 chr5 81384814 81384925 -71152334 + GA-rich Low_complexity Low_complexity 16 129 0 5 1205 272 324 94 38 chr5 81384935 81385201 -71152058 + L1M4c LINE L1 1227 1507 -4877 5 1205 236 283 174 8 chr5 81385630 81385751 -71151508 + L1M4c LINE L1 1623 1763 -4621 5 1205 429 109 0 0 chr5 81386449 81386513 -71150746 + (TAG)n Simple_repeat Simple_repeat 2 65 0 5 1205 382 200 12 0 chr5 81386868 81386948 -71150311 + L1_Mur3 LINE L1 2729 2809 -3071 5 1205 22 35 0 0 chr5 81387115 81387144 -71150115 + AT_rich Low_complexity Low_complexity 1 29 0 5 1205 27 92 0 0 chr5 81387189 81387265 -71149994 + AT_rich Low_complexity Low_complexity 1 76 0 5 1205 23 33 0 0 chr5 81387302 81387332 -71149927 + AT_rich Low_complexity Low_complexity 1 30 0 5 1205 21 36 0 0 chr5 81387472 81387500 -71149759 + AT_rich Low_complexity Low_complexity 1 28 0 5 1205 7651 96 11 12 chr5 81387568 81388948 -71148311 - L1_Mus1 LINE L1 -278 6703 5387 5 1205 3080 95 86 6 chr5 81388951 81389438 -71147821 - Lx3_Mus LINE L1 -474 6535 6010 5 1205 1149 99 6 0 chr5 81389440 81389602 -71147657 - B2_Mm2 SINE B2 -31 164 2 5 1205 297 75 0 0 chr5 81389787 81389827 -71147432 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 5 1205 192 97 0 0 chr5 81390008 81390039 -71147220 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1205 416 353 39 86 chr5 81390050 81390310 -71146949 + MLT1E2 LTR MaLR 190 438 -189 5 1205 275 276 227 10 chr5 81390665 81390863 -71146396 + L1MEg LINE L1 509 749 -5335 5 1205 516 77 0 0 chr5 81391359 81391437 -71145822 + (CA)n Simple_repeat Simple_repeat 2 79 0 5 1205 1272 170 9 0 chr5 81391595 81391818 -71145441 + URR1B DNA MER1_type 1 225 0 5 1205 23 0 0 0 chr5 81392654 81392677 -71144582 + AT_rich Low_complexity Low_complexity 1 23 0 5 1205 258 105 0 0 chr5 81393712 81393750 -71143509 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5 1205 1808 188 50 5 chr5 81393752 81394132 -71143127 - Lx5 LINE L1 0 7050 6654 5 1205 4077 69 31 2 chr5 81394189 81394739 -71142520 - L1_Mus4 LINE L1 -12 6624 6059 5 1205 3267 72 30 84 chr5 81394749 81395341 -71141918 + MusHAL1 LINE L1 1590 2149 -563 5 150 4809 178 66 6 chr5 81395343 81396711 -71140548 - Lx5 LINE L1 -451 6599 5155 5 1206 9997 166 53 15 chr5 81396712 81398739 -71138520 - Lx5 LINE L1 -1669 4208 2105 5 1206 2505 172 24 22 chr5 81398741 81399559 -71137700 - Lx5 LINE L1 -4139 1738 919 5 1206 21 0 0 0 chr5 81400327 81400348 -71136911 + AT_rich Low_complexity Low_complexity 1 21 0 5 1206 294 339 98 29 chr5 81400595 81400768 -71136491 + MLT1C LTR MaLR 283 467 0 5 1206 627 279 158 36 chr5 81402108 81402345 -71134914 + Arthur1 DNA Tip100 3423 3689 -258 5 1206 1589 27 0 16 chr5 81402345 81402534 -71134725 + B2_Mm1t SINE B2 2 187 -6 5 1206 1601 52 0 0 chr5 81402534 81402726 -71134533 + B2_Mm1a SINE B2 2 193 0 5 1206 627 279 158 36 chr5 81402726 81402955 -71134304 + Arthur1 DNA Tip100 3690 3946 -1 5 1206 216 135 0 0 chr5 81403330 81403367 -71133892 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1206 4696 127 8 20 chr5 81403368 81404122 -71133137 - Lx3_Mus LINE L1 -1 7008 6264 5 1206 27 62 0 0 chr5 81404245 81404293 -71132966 + AT_rich Low_complexity Low_complexity 1 48 0 5 1206 489 110 0 0 chr5 81404989 81405062 -71132197 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 5 1206 439 159 35 9 chr5 81405048 81405162 -71132097 + G-rich Low_complexity Low_complexity 3 119 0 5 1206 1235 89 6 0 chr5 81405162 81405341 -71131918 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 5 1206 243 237 18 142 chr5 81405494 81405607 -71131652 + BC1_Mm scRNA scRNA 1 99 -53 5 1206 189 171 0 0 chr5 81405864 81405899 -71131360 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 5 1206 260 279 93 54 chr5 81407498 81407627 -71129632 - Charlie1b DNA MER1_type -39 484 351 5 1206 255 303 25 38 chr5 81407743 81407822 -71129437 + ID4_ SINE ID 4 81 -2 5 1206 246 32 0 0 chr5 81409319 81409350 -71127909 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1206 501 320 54 45 chr5 81410005 81410339 -71126920 + LTR37A LTR ERV1 46 382 -44 5 1206 270 125 0 0 chr5 81412309 81412357 -71124902 + (TTTCG)n Simple_repeat Simple_repeat 3 50 0 5 1206 2230 173 149 9 chr5 81412761 81413217 -71124042 + RMER15 LTR ERVL 22 541 -34 5 1206 313 232 7 0 chr5 81413299 81413374 -71123885 - Lx8 LINE L1 -252 7221 7167 5 1206 336 260 39 26 chr5 81413847 81414001 -71123258 + CT-rich Low_complexity Low_complexity 1 156 0 5 1206 837 287 84 57 chr5 81414716 81415085 -71122174 - MTE2b LTR MaLR 0 379 1 5 1206 186 304 29 0 chr5 81415146 81415215 -71122044 - MIR SINE MIR 0 262 192 5 1206 754 312 28 65 chr5 81416065 81416312 -71120947 + B4A SINE B4 55 292 0 5 1206 357 326 35 0 chr5 81416313 81416454 -71120805 + HAL1-2a_MD LINE L1 2362 2507 -517 5 1206 32 0 0 0 chr5 81416494 81416526 -71120733 + AT_rich Low_complexity Low_complexity 1 32 0 5 1206 886 320 88 24 chr5 81416994 81417657 -71119602 - L1MA5 LINE L1 -415 5885 5183 5 1206 3493 18 2 0 chr5 81417657 81418052 -71119207 + MTA_Mm LTR MaLR 1 396 0 5 1206 9144 20 20 1 chr5 81418052 81419129 -71118130 + MTA_Mm-int LTR MaLR 1 1098 0 5 1206 3527 13 2 0 chr5 81419129 81419524 -71117735 + MTA_Mm LTR MaLR 1 396 0 5 1206 900 320 71 27 chr5 81419524 81420241 -71117018 - L1MA5 LINE L1 -944 5199 4440 5 1206 1367 279 88 12 chr5 81420296 81420884 -71116375 - L1MA5 LINE L1 -1889 4254 3622 5 1206 363 44 0 0 chr5 81420999 81421044 -71116215 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1206 444 67 0 0 chr5 81421223 81421283 -71115976 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1206 1778 80 8 0 chr5 81423080 81423318 -71113941 - L1_Mus2 LINE L1 -4 6562 6323 5 1206 261 98 0 0 chr5 81423419 81423460 -71113799 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1206 495 0 0 0 chr5 81423460 81423514 -71113745 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1206 1304 345 107 60 chr5 81423550 81424994 -71112265 - Lx8 LINE L1 -237 7236 5725 5 1206 323 104 46 19 chr5 81425916 81426024 -71111235 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 1206 294 333 65 18 chr5 81426117 81426285 -71110974 + MTEb LTR MaLR 200 375 -4 5 1206 23 0 0 0 chr5 81426818 81426841 -71110418 + AT_rich Low_complexity Low_complexity 1 23 0 5 1206 501 228 206 0 chr5 81427280 81427499 -71109760 + Lx9 LINE L1 7381 7644 0 5 1206 6338 67 0 26 chr5 81427518 81428376 -71108883 + L1Md_F2 LINE L1 4751 5586 -297 5 1206 8160 39 3 0 chr5 81428377 81429366 -71107893 + L1Md_F2 LINE L1 5588 6579 -3 5 1206 21 0 0 0 chr5 81429366 81429387 -71107872 + AT_rich Low_complexity Low_complexity 1 21 0 5 1206 21 0 0 0 chr5 81429451 81429472 -71107787 + AT_rich Low_complexity Low_complexity 1 21 0 5 1206 1139 299 59 34 chr5 81429768 81430131 -71107128 + MTE2b LTR MaLR 3 357 -2 5 1206 478 312 61 28 chr5 81430351 81430746 -71106513 + MLT1C LTR MaLR 45 448 -19 6 1206 438 94 0 0 chr5 81431141 81431205 -71106054 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1206 5028 69 0 6 chr5 81431310 81431979 -71105280 - L1Md_F2 LINE L1 0 6582 5918 6 1206 588 260 47 6 chr5 81432200 81432370 -71104889 + B3 SINE B2 40 216 0 6 1206 444 19 0 0 chr5 81432627 81432680 -71104579 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1206 22 0 0 0 chr5 81433040 81433062 -71104197 + AT_rich Low_complexity Low_complexity 1 22 0 6 1206 2063 265 72 25 chr5 81433103 81433675 -71103584 - Lx6 LINE L1 -2 7458 6860 6 1206 3829 249 41 96 chr5 81433724 81435165 -71102094 + RMER1C Other Other 140 1338 -4 6 1206 409 326 21 7 chr5 81435726 81435868 -71101391 - RSINE1 SINE B4 -8 157 14 6 1206 1709 139 17 0 chr5 81436052 81436339 -71100920 - Lx9 LINE L1 -577 7067 6776 6 1206 1350 233 96 30 chr5 81436338 81436697 -71100562 + Lx9 LINE L1 7044 7433 -211 6 1206 417 20 0 0 chr5 81436697 81436747 -71100512 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1206 1350 233 96 30 chr5 81436747 81436918 -71100341 + Lx9 LINE L1 7434 7609 -35 6 1206 3110 263 128 33 chr5 81438351 81439701 -71097558 - Lx6 LINE L1 -10 7450 5974 6 1206 447 264 47 63 chr5 81439728 81439918 -71097341 - RLTR23 LTR ERV1 0 430 244 6 1206 567 29 0 0 chr5 81440679 81440748 -71096511 + (GA)n Simple_repeat Simple_repeat 2 70 0 6 1206 365 293 130 10 chr5 81440779 81440879 -71096380 - B3A SINE B2 -84 114 3 6 1206 310 308 53 59 chr5 81441525 81441677 -71095582 + MTEb LTR MaLR 1 151 -228 6 1206 405 102 0 0 chr5 81441730 81441789 -71095470 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 6 1206 341 188 16 0 chr5 81441790 81441854 -71095405 + MTEb LTR MaLR 315 379 0 6 1206 392 269 18 55 chr5 81442211 81442321 -71094938 + B1F SINE Alu 9 114 -3 6 1206 390 115 0 0 chr5 81444359 81444420 -71092839 + (TTCC)n Simple_repeat Simple_repeat 2 62 0 6 1206 759 22 0 0 chr5 81444807 81444896 -71092363 + (GA)n Simple_repeat Simple_repeat 2 90 0 6 1206 2894 59 2 60 chr5 81444915 81445328 -71091931 + L1_Mus2 LINE L1 6171 6559 -7 6 1206 737 243 130 32 chr5 81445353 81445569 -71091690 + RMER15 LTR ERVL 303 532 -43 6 1206 333 0 0 0 chr5 81445569 81445606 -71091653 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1206 737 243 130 32 chr5 81445606 81445636 -71091623 + RMER15 LTR ERVL 533 572 -3 6 1206 306 234 31 41 chr5 81447073 81447171 -71090088 - MTEa LTR MaLR -4 375 279 6 1206 520 25 75 0 chr5 81447546 81447626 -71089633 + L1Md_F3 LINE L1 6499 6584 0 6 1206 229 240 0 20 chr5 81447938 81447989 -71089270 + GA-rich Low_complexity Low_complexity 4 53 0 6 1206 236 295 13 13 chr5 81448366 81448445 -71088814 + GA-rich Low_complexity Low_complexity 4 82 0 6 1206 631 0 12 12 chr5 81448464 81448544 -71088715 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1206 228 232 10 20 chr5 81448922 81449023 -71088236 + (CCG)n Simple_repeat Simple_repeat 2 101 0 6 1206 227 204 0 0 chr5 81449238 81449287 -71087972 + A-rich Low_complexity Low_complexity 1 49 0 6 1206 213 281 15 15 chr5 81449677 81449742 -71087517 + GA-rich Low_complexity Low_complexity 2 66 0 6 1206 207 0 0 0 chr5 81449815 81449838 -71087421 + (CGG)n Simple_repeat Simple_repeat 3 25 0 6 1206 234 192 0 0 chr5 81450209 81450261 -71086998 + T-rich Low_complexity Low_complexity 1 52 0 6 1206 256 260 0 52 chr5 81454695 81454772 -71082487 - ID4_ SINE ID -10 73 1 6 1206 333 350 48 31 chr5 81455077 81455304 -71081955 + Charlie1 DNA MER1_type 8 238 -2543 6 1206 224 343 55 20 chr5 81455769 81455915 -71081344 + MIR SINE MIR 99 249 -13 6 1206 192 77 0 0 chr5 81455941 81455967 -71081292 + (CAT)n Simple_repeat Simple_repeat 2 27 0 6 1206 314 273 148 22 chr5 81457621 81457756 -71079503 - HAL1-3A_ME LINE L1 -419 2439 2288 6 1206 189 0 0 0 chr5 81459760 81459781 -71077478 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1206 457 320 19 48 chr5 81460549 81460756 -71076503 - B3 SINE B2 -15 201 1 6 1206 376 331 20 67 chr5 81460756 81460905 -71076354 - B4A SINE B4 -64 228 87 6 1206 246 286 129 0 chr5 81460963 81461033 -71076226 - PB1D10 SINE Alu -31 86 8 6 1206 1852 197 59 8 chr5 81461918 81462292 -71074967 - MTC LTR MaLR 0 421 29 6 1206 208 163 23 0 chr5 81463327 81463370 -71073889 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1206 273 198 0 0 chr5 81463383 81463464 -71073795 + (TG)n Simple_repeat Simple_repeat 2 82 0 6 1206 267 122 0 0 chr5 81463477 81463526 -71073733 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1206 189 0 0 0 chr5 81464160 81464181 -71073078 + (CA)n Simple_repeat Simple_repeat 2 22 0 6 1206 283 340 9 36 chr5 81464461 81464571 -71072688 + PB1D10 SINE Alu 1 107 -10 6 1206 198 272 35 88 chr5 81465036 81465149 -71072110 + MIR SINE MIR 119 225 -37 6 1206 37 0 0 0 chr5 81465407 81465444 -71071815 + AT_rich Low_complexity Low_complexity 1 37 0 6 1206 1033 223 253 3 chr5 81465742 81466034 -71071225 + MTD LTR MaLR 16 380 -39 6 1206 195 42 0 0 chr5 81467206 81467230 -71070029 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1206 524 231 0 12 chr5 81467276 81467438 -71069821 + GA-rich Low_complexity Low_complexity 2 161 0 6 1206 241 277 0 30 chr5 81467807 81467874 -71069385 - PB1D10 SINE Alu -2 115 51 6 1206 197 186 0 33 chr5 81468406 81468467 -71068792 + C-rich Low_complexity Low_complexity 3 61 0 6 1206 24 0 0 0 chr5 81468940 81468964 -71068295 + AT_rich Low_complexity Low_complexity 1 24 0 6 1206 2479 64 103 22 chr5 81469720 81470089 -71067170 + MTB LTR MaLR 2 400 0 6 1206 259 96 39 0 chr5 81470181 81470233 -71067026 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6 1206 392 152 19 57 chr5 81470299 81470404 -71066855 - Lx2B LINE L1 -6 6994 6894 6 1206 1955 76 87 0 chr5 81470530 81470819 -71066440 + L1_Mus3 LINE L1 6319 6632 -6 6 1206 599 161 8 0 chr5 81471067 81471185 -71066074 + GA-rich Low_complexity Low_complexity 3 121 0 6 1206 1137 294 136 32 chr5 81472976 81474950 -71062309 - L1MA5 LINE L1 -25 6275 4100 6 1206 24 32 0 0 chr5 81476744 81476775 -71060484 + AT_rich Low_complexity Low_complexity 1 31 0 6 1206 475 312 104 0 chr5 81476814 81477064 -71060195 - Lx9 LINE L1 -91 7553 7278 6 1206 1043 300 56 85 chr5 81477190 81477448 -71059811 + MTD LTR MaLR 18 264 -155 6 1206 300 0 19 74 chr5 81477448 81477502 -71059757 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 1206 1043 300 56 85 chr5 81477502 81477655 -71059604 + MTD LTR MaLR 265 417 -2 6 1206 668 251 14 28 chr5 81478665 81478882 -71058377 - L1MC4a LINE L1 -1 7881 7668 6 1206 215 267 22 65 chr5 81479538 81479630 -71057629 + L2c LINE L2 3282 3369 -18 6 1206 52 30 0 0 chr5 81480716 81480782 -71056477 + AT_rich Low_complexity Low_complexity 1 66 0 6 1206 577 187 15 0 chr5 81480792 81480926 -71056333 + (TA)n Simple_repeat Simple_repeat 1 136 0 6 1206 273 182 0 0 chr5 81481090 81481145 -71056114 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1206 1054 226 109 23 chr5 81481145 81481609 -71055650 - Lx9 LINE L1 -127 7517 6974 6 1206 216 204 23 0 chr5 81481736 81481780 -71055479 + ID4_ SINE ID 38 82 -1 6 1206 265 268 14 27 chr5 81481829 81481902 -71055357 + ID4 SINE ID 12 83 0 6 1206 270 0 0 0 chr5 81482177 81482207 -71055052 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 6 1206 180 0 0 0 chr5 81482268 81482288 -71054971 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 6 1206 379 400 28 0 chr5 81482871 81483121 -71054138 - Tigger7 DNA MER2_type -31 2460 2204 6 1206 342 0 0 0 chr5 81485404 81485442 -71051817 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1206 395 221 8 0 chr5 81485442 81485569 -71051690 + (TG)n Simple_repeat Simple_repeat 2 129 0 6 1206 213 355 0 0 chr5 81485640 81485702 -71051557 - B4A SINE B4 -146 146 85 6 1206 229 328 30 69 chr5 81485955 81486086 -71051173 - L2a LINE L2 -196 3230 3105 6 1206 24 32 0 0 chr5 81488155 81488186 -71049073 + AT_rich Low_complexity Low_complexity 1 31 0 6 1206 795 254 59 34 chr5 81488242 81488446 -71048813 - B3 SINE B2 -6 210 2 6 1206 264 59 0 0 chr5 81489192 81489226 -71048033 + (CAA)n Simple_repeat Simple_repeat 2 35 0 6 1206 209 314 81 29 chr5 81489749 81489908 -71047351 + MIRb SINE MIR 9 170 -38 6 1206 527 227 6 30 chr5 81491091 81491223 -71046036 - MLT1A1 LTR MaLR 0 408 260 6 1206 396 0 0 0 chr5 81491462 81491506 -71045753 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1206 246 289 38 38 chr5 81491569 81491648 -71045611 - ID4 SINE ID -3 80 2 6 1206 844 150 0 12 chr5 81491891 81492053 -71045206 + CT-rich Low_complexity Low_complexity 2 161 0 6 1206 399 306 56 23 chr5 81492061 81492275 -71044984 + Lx8 LINE L1 7248 7468 -5 6 1206 323 353 56 62 chr5 81493032 81493319 -71043940 + L2b LINE L2 3143 3425 -1 6 1206 192 125 0 0 chr5 81493420 81493452 -71043807 + (TTC)n Simple_repeat Simple_repeat 2 33 0 6 1206 1385 130 5 0 chr5 81493488 81493704 -71043555 - Lx2 LINE L1 -6 6991 6775 6 1206 1078 159 0 6 chr5 81493704 81493881 -71043378 - Lx2 LINE L1 -354 6643 6468 6 1206 696 143 34 7 chr5 81493880 81494028 -71043231 + L1_Mur2 LINE L1 5248 5399 -478 6 1206 262 174 26 186 chr5 81494028 81494141 -71043118 - RLTR25B LTR ERVK -493 535 441 6 1206 894 73 24 0 chr5 81494056 81494180 -71043079 - B1_Mm SINE Alu -20 127 1 6 1206 861 131 0 0 chr5 81496824 81497000 -71040259 + (TC)n Simple_repeat Simple_repeat 2 177 0 6 1206 360 0 0 0 chr5 81499391 81499431 -71037828 + (TA)n Simple_repeat Simple_repeat 1 40 0 6 1206 288 0 0 0 chr5 81499451 81499483 -71037776 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 6 1206 1174 42 14 0 chr5 81499484 81499628 -71037631 - B1_Mm SINE Alu 0 147 2 6 1206 521 300 24 42 chr5 81500017 81500184 -71037075 + RSINE1 SINE B4 2 165 0 1 1206 303 377 83 53 chr5 81501686 81502081 -71035178 - MLT1J LTR MaLR -34 478 72 2 1206 193 362 102 17 chr5 81502595 81502713 -71034546 + MIRb SINE MIR 105 232 -36 3 1206 566 336 78 80 chr5 81502794 81503295 -71033964 - MLT1G3 LTR MaLR -16 579 80 4 1206 30 45 0 0 chr5 81503844 81503888 -71033371 + AT_rich Low_complexity Low_complexity 1 44 0 5 1206 270 0 0 0 chr5 81504315 81504345 -71032914 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1206 187 293 17 17 chr5 81505375 81505434 -71031825 + MIR3 SINE MIR 149 207 -1 7 1206 304 333 7 7 chr5 81505901 81506046 -71031213 + GA-rich Low_complexity Low_complexity 1 145 0 8 1206 459 0 0 0 chr5 81506049 81506100 -71031159 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1206 261 0 0 0 chr5 81506100 81506128 -71031131 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1206 234 0 0 0 chr5 81506609 81506635 -71030624 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1206 23 0 0 0 chr5 81507512 81507535 -71029724 + AT_rich Low_complexity Low_complexity 1 23 0 1 1206 6328 87 116 1 chr5 81508149 81509120 -71028139 - L1_Mus3 LINE L1 -6 6632 5550 1 1206 1712 81 0 0 chr5 81509138 81509360 -71027899 + L1_Mus3 LINE L1 5357 5578 -305 1 1206 207 0 0 0 chr5 81510041 81510064 -71027195 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1206 672 13 0 0 chr5 81511238 81511315 -71025944 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 1 1206 23 0 0 0 chr5 81512572 81512595 -71024664 + AT_rich Low_complexity Low_complexity 1 23 0 1 1206 218 382 0 0 chr5 81515243 81515311 -71021948 + ID4 SINE ID 15 82 -1 1 1206 534 238 189 22 chr5 81516557 81516742 -71020517 + B3 SINE B2 1 216 0 1 1206 464 292 80 0 chr5 81517362 81517475 -71019784 + RSINE1 SINE B4 24 145 -20 1 1206 357 55 13 89 chr5 81517485 81517564 -71019695 + (TAAA)n Simple_repeat Simple_repeat 2 74 0 2 1206 288 53 0 0 chr5 81518489 81518527 -71018732 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2 1206 326 324 108 8 chr5 81519545 81519737 -71017522 - MIRm SINE MIR 0 208 10 2 1206 595 133 9 17 chr5 81520652 81520767 -71016492 + GA-rich Low_complexity Low_complexity 3 116 0 2 1206 273 257 45 62 chr5 81521871 81521983 -71015276 + Lx7 LINE L1 7191 7300 -396 2 1206 318 106 0 0 chr5 81522147 81522194 -71015065 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1206 414 0 0 0 chr5 81522195 81522241 -71015018 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1206 277 315 88 51 chr5 81522813 81522950 -71014309 - MTEa LTR MaLR 0 379 238 2 1206 193 29 29 29 chr5 81523192 81523227 -71014032 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1206 235 345 35 55 chr5 81523363 81523546 -71013713 + MIRc SINE MIR 9 196 -72 2 1206 24 32 0 0 chr5 81524357 81524388 -71012871 + AT_rich Low_complexity Low_complexity 1 31 0 3 1206 234 0 0 0 chr5 81525017 81525043 -71012216 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 3 1206 343 302 67 8 chr5 81525096 81525216 -71012043 + B4 SINE B4 4 130 -162 3 1206 379 290 0 88 chr5 81525235 81525371 -71011888 + B4 SINE B4 119 242 -50 3 1206 3748 233 31 61 chr5 81525491 81526396 -71010863 - RMER13B LTR ERVK 0 908 31 3 1206 561 216 92 0 chr5 81526423 81526626 -71010633 + RMER15 LTR ERVL 285 572 -3 3 1207 315 363 35 0 chr5 81527058 81527171 -71010088 + MER102c DNA MER1_type 203 319 -12 3 1207 330 312 26 44 chr5 81528493 81528607 -71008652 + MIRb SINE MIR 35 146 -122 3 1207 198 227 23 0 chr5 81528717 81528761 -71008498 + MIRb SINE MIR 203 247 -21 3 1207 218 256 0 0 chr5 81529556 81529599 -71007660 + polypyrimidine Low_complexity Low_complexity 1 43 0 3 1207 207 0 0 0 chr5 81529833 81529856 -71007403 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1207 25 0 0 0 chr5 81531743 81531768 -71005491 + AT_rich Low_complexity Low_complexity 1 25 0 3 1207 234 0 0 0 chr5 81531965 81531991 -71005268 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1207 998 179 61 10 chr5 81532830 81533027 -71004232 - URR1B DNA MER1_type 0 225 19 4 1207 896 292 46 27 chr5 81533059 81533428 -71003831 - MTEb LTR MaLR 0 379 4 4 1207 306 101 43 0 chr5 81533650 81533719 -71003540 + (TA)n Simple_repeat Simple_repeat 1 72 0 4 1207 199 54 54 0 chr5 81533719 81533756 -71003503 + (TCTA)n Simple_repeat Simple_repeat 1 39 0 4 1207 1741 312 58 58 chr5 81534713 81535530 -71001729 - Lx9 LINE L1 -453 7191 6375 4 1207 192 40 0 0 chr5 81535595 81535620 -71001639 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 4 1207 526 206 247 19 chr5 81537259 81537417 -70999842 + B3 SINE B2 23 216 0 4 1207 566 295 0 15 chr5 81537571 81537702 -70999557 + B3 SINE B2 58 186 -30 4 1207 393 75 0 0 chr5 81538391 81538444 -70998815 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1207 751 277 11 6 chr5 81538856 81539034 -70998225 - B3 SINE B2 -37 179 1 5 1207 333 0 0 0 chr5 81539092 81539129 -70998130 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1207 381 317 7 27 chr5 81539314 81539463 -70997796 + CT-rich Low_complexity Low_complexity 6 151 0 5 1207 3299 101 22 22 chr5 81541104 81541610 -70995649 + Lx3_Mus LINE L1 6504 7009 0 5 1207 183 114 0 0 chr5 81541932 81541967 -70995292 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1207 180 152 0 0 chr5 81542659 81542692 -70994567 + T-rich Low_complexity Low_complexity 1 33 0 5 1207 236 289 78 13 chr5 81542919 81542996 -70994263 - B1_Mm SINE Alu -56 91 10 5 1207 41 58 0 0 chr5 81543429 81543498 -70993761 + AT_rich Low_complexity Low_complexity 1 69 0 5 1207 551 274 93 19 chr5 81543930 81544146 -70993113 - Lx9 LINE L1 -451 7193 6962 5 1207 374 57 0 19 chr5 81544394 81544448 -70992811 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1207 2998 235 103 12 chr5 81544448 81545193 -70992066 - Lx6 LINE L1 -145 7315 6503 6 1207 234 0 0 0 chr5 81546956 81546982 -70990277 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1207 231 326 71 107 chr5 81547021 81547217 -70990042 - B4A SINE B4 -14 278 90 6 1207 263 279 164 31 chr5 81547278 81547437 -70989822 + MIR SINE MIR 53 232 -30 6 1207 229 354 0 0 chr5 81547441 81547520 -70989739 + MER104 DNA Tc2 8 86 -95 6 1207 25 75 0 0 chr5 81547785 81547838 -70989421 + AT_rich Low_complexity Low_complexity 1 53 0 6 1207 3086 313 100 29 chr5 81549675 81551232 -70986027 + Tigger7 DNA MER2_type 104 1770 -721 6 1207 237 65 0 0 chr5 81551268 81551299 -70985960 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 6 1207 181 0 33 33 chr5 81552112 81552142 -70985117 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1207 524 279 135 93 chr5 81552235 81552590 -70984669 + Tigger7 DNA MER2_type 1938 2307 -184 6 1207 220 27 54 0 chr5 81552868 81552905 -70984354 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1207 184 167 28 0 chr5 81553282 81553318 -70983941 + L4 LINE RTE 866 902 -1127 7 1207 2250 60 7 23 chr5 81554596 81554902 -70982357 - L1_Mus1 LINE L1 -1 6566 6266 7 1207 183 115 37 37 chr5 81555212 81555224 -70982035 + (TCTA)n Simple_repeat Simple_repeat 4 14 0 7 1207 216 86 0 0 chr5 81555224 81555259 -70982000 + (TATG)n Simple_repeat Simple_repeat 4 38 0 7 1207 183 115 37 37 chr5 81555259 81555300 -70981959 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 7 1207 234 105 0 0 chr5 81555763 81555801 -70981458 + (CATA)n Simple_repeat Simple_repeat 3 40 0 7 1207 200 360 0 0 chr5 81557804 81557879 -70979380 + (CA)n Simple_repeat Simple_repeat 1 75 0 7 1207 410 302 17 0 chr5 81557882 81557998 -70979261 - RSINE1 SINE B4 -21 144 27 7 1207 25 51 0 0 chr5 81558995 81559034 -70978225 + AT_rich Low_complexity Low_complexity 1 39 0 7 1207 7894 47 8 4 chr5 81560396 81561457 -70975802 - L1Md_F2 LINE L1 -12 6570 5505 7 1207 364 225 106 18 chr5 81561971 81562084 -70975175 + Lx7 LINE L1 7574 7696 0 8 1207 882 257 111 23 chr5 81562131 81562474 -70974785 - ORR1D1 LTR MaLR 0 374 2 8 1207 24 0 0 0 chr5 81563692 81563716 -70973543 + AT_rich Low_complexity Low_complexity 1 24 0 8 1207 288 91 0 0 chr5 81563784 81563828 -70973431 + (TTG)n Simple_repeat Simple_repeat 2 45 0 8 1207 180 125 0 0 chr5 81565687 81565719 -70971540 + (TA)n Simple_repeat Simple_repeat 1 32 0 8 1207 186 224 0 0 chr5 81566124 81566173 -70971086 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1207 1018 226 120 106 chr5 81566181 81566557 -70970702 - MTD LTR MaLR -21 398 18 8 1207 513 265 52 0 chr5 81566599 81566735 -70970524 + B1F2 SINE Alu 5 147 -2 8 1207 227 314 58 0 chr5 81567670 81567756 -70969503 + B1F SINE Alu 1 91 -58 8 1207 225 340 48 10 chr5 81567867 81567895 -70969364 + ID_B1 SINE B4 70 176 -47 8 1207 230 297 40 13 chr5 81567895 81567970 -70969289 + PB1D10 SINE Alu 19 95 -22 9 1207 397 262 40 13 chr5 81568446 81568597 -70968662 - L1MC LINE L1 -1118 5028 4874 9 1207 283 211 92 46 chr5 81569217 81569391 -70967868 - Lx7 LINE L1 -4 7692 7511 9 1207 222 118 0 0 chr5 81569401 81569435 -70967824 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1207 654 239 6 36 chr5 81569510 81569675 -70967584 - Lx7 LINE L1 -329 7367 7208 9 1207 357 82 0 0 chr5 81571213 81571262 -70965997 + (CACG)n Simple_repeat Simple_repeat 2 50 0 9 1207 721 324 65 41 chr5 81572007 81572564 -70964695 - Lx8 LINE L1 -10 7463 6894 9 1207 291 145 0 0 chr5 81573578 81573647 -70963612 + (TA)n Simple_repeat Simple_repeat 1 69 0 9 1207 598 278 205 9 chr5 81574658 81574887 -70962372 + B4A SINE B4 1 274 -18 9 1207 1410 17 0 39 chr5 81574899 81575135 -70962124 + (GGGAGA)n Simple_repeat Simple_repeat 1 226 0 9 1207 225 0 0 0 chr5 81575240 81575265 -70961994 + (CAGTA)n Simple_repeat Simple_repeat 2 26 0 9 1207 32 43 0 0 chr5 81576958 81577004 -70960255 + AT_rich Low_complexity Low_complexity 1 46 0 1 1207 22 0 0 0 chr5 81577201 81577223 -70960036 + AT_rich Low_complexity Low_complexity 1 22 0 1 1207 518 374 75 29 chr5 81577255 81577671 -70959588 + MLT2B2 LTR ERVL 1 435 -80 1 1207 342 107 0 0 chr5 81577672 81577728 -70959531 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1207 477 87 19 37 chr5 81577736 81577843 -70959416 + (CAGAGA)n Simple_repeat Simple_repeat 4 108 0 1 1207 447 152 0 0 chr5 81577980 81578059 -70959200 + (TA)n Simple_repeat Simple_repeat 2 80 0 1 1207 377 317 105 7 chr5 81579146 81579289 -70957970 + RSINE1 SINE B4 9 165 0 1 1207 459 0 0 0 chr5 81579377 81579428 -70957831 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1207 378 0 0 0 chr5 81579527 81579569 -70957690 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1207 567 188 0 0 chr5 81581689 81581801 -70955458 + (TA)n Simple_repeat Simple_repeat 2 113 0 1 1207 206 216 0 0 chr5 81582721 81582758 -70954501 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1207 276 30 0 0 chr5 81582786 81582819 -70954440 + (TATG)n Simple_repeat Simple_repeat 4 36 0 1 1207 280 311 8 78 chr5 81582889 81583018 -70954241 - RMER5 LTR ERV1 -18 516 397 1 1207 205 190 0 23 chr5 81583115 81583158 -70954101 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 1 1207 2215 70 0 0 chr5 81583263 81583661 -70953598 + L1_Mus1 LINE L1 6277 6567 0 1 1207 360 304 171 70 chr5 81584050 81584365 -70952894 - RMER5 LTR ERV1 -131 403 57 1 1207 348 183 0 55 chr5 81584371 81584456 -70952803 + RMER1B Other Other 366 437 -629 1 1207 824 174 0 32 chr5 81586699 81586853 -70950406 - B1_Mur3 SINE Alu 0 149 1 1 1207 770 270 48 41 chr5 81587340 81587610 -70949649 - Tigger5 DNA MER2_type -7 2399 2128 1 1207 846 303 60 54 chr5 81588190 81588637 -70948622 - RLTR17 LTR ERVK -126 566 117 1 1207 687 95 0 0 chr5 81588803 81588908 -70948351 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 1207 729 0 0 0 chr5 81590009 81590090 -70947169 + (TCCCC)n Simple_repeat Simple_repeat 5 85 0 1 1207 22 35 0 0 chr5 81590824 81590853 -70946406 + AT_rich Low_complexity Low_complexity 1 29 0 1 1207 29 0 0 0 chr5 81591731 81591760 -70945499 + AT_rich Low_complexity Low_complexity 1 29 0 1 1207 426 244 0 0 chr5 81592108 81592227 -70945032 + (TA)n Simple_repeat Simple_repeat 1 119 0 1 1207 485 356 35 0 chr5 81592232 81592406 -70944853 - Tigger7 DNA MER2_type -2310 181 2 1 1207 264 297 16 83 chr5 81594329 81594450 -70942809 + L3 LINE CR1 3503 3615 -874 1 1207 487 280 37 55 chr5 81596037 81596284 -70940975 - B4A SINE B4 -2 290 1 1 1207 189 0 0 0 chr5 81596420 81596441 -70940818 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1 1207 214 358 85 80 chr5 81596482 81596670 -70940589 + B4A SINE B4 49 237 -55 1 1207 300 225 0 24 chr5 81596733 81596815 -70940444 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1207 3114 201 137 21 chr5 81597930 81598780 -70938479 - L1_Mur2 LINE L1 -3138 2739 1792 1 1207 243 318 9 18 chr5 81598817 81598926 -70938333 - PB1D10 SINE Alu -7 110 3 1 1207 198 143 0 0 chr5 81600124 81600159 -70937100 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1207 263 175 18 0 chr5 81600163 81600220 -70937039 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1207 503 235 16 70 chr5 81600239 81600367 -70936892 - B1F SINE Alu -1 148 28 1 1207 442 267 60 50 chr5 81601204 81601433 -70935826 - MTE2a LTR MaLR 0 379 85 1 1207 277 131 0 21 chr5 81601447 81601494 -70935765 + Lx9 LINE L1 7429 7474 -170 1 1207 429 129 0 0 chr5 81601499 81601569 -70935690 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1 1207 352 198 33 33 chr5 81601569 81601689 -70935570 + Lx9 LINE L1 7518 7637 -7 1 1207 24 32 0 0 chr5 81603488 81603519 -70933740 + AT_rich Low_complexity Low_complexity 1 31 0 1 1207 515 328 97 50 chr5 81603597 81603876 -70933383 - B4A SINE B4 0 292 1 1 1207 939 102 80 0 chr5 81604839 81604976 -70932283 + B1_Mus1 SINE Alu 1 148 0 1 1207 273 20 0 75 chr5 81604978 81605031 -70932228 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1207 2924 159 12 45 chr5 81605422 81606002 -70931257 - RLTR31_Mm LTR ERVK 0 561 1 1 1207 21 0 0 0 chr5 81606050 81606071 -70931188 + AT_rich Low_complexity Low_complexity 1 21 0 1 1207 899 246 55 48 chr5 81606520 81606892 -70930367 - Lx3C LINE L1 -9 7049 6656 1 1207 406 331 75 82 chr5 81607001 81607320 -70929939 - ORR1E LTR MaLR -34 325 9 1 1207 279 203 0 0 chr5 81608004 81608078 -70929181 + (CCTA)n Simple_repeat Simple_repeat 1 74 0 1 1207 428 62 16 0 chr5 81608086 81608150 -70929109 + (CATA)n Simple_repeat Simple_repeat 1 65 0 1 1207 245 295 25 37 chr5 81609559 81609640 -70927619 - RSINE1 SINE B4 -81 84 5 1 1207 327 337 140 11 chr5 81611124 81611310 -70925949 - MIR SINE MIR -25 237 28 1 1207 243 291 32 75 chr5 81611383 81611476 -70925783 + ID_B1 SINE B4 88 176 -48 1 1207 211 194 0 0 chr5 81611502 81611538 -70925721 + (ATGGTG)n Simple_repeat Simple_repeat 1 36 0 1 1207 269 51 26 0 chr5 81611707 81611746 -70925513 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1 1207 605 263 7 14 chr5 81611746 81611885 -70925374 - B1_Mur4 SINE Alu -12 138 1 1 1207 338 0 24 0 chr5 81613875 81613917 -70923342 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1207 201 74 0 0 chr5 81614505 81614532 -70922727 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1207 356 346 24 0 chr5 81614603 81614730 -70922529 - B1F SINE Alu -11 138 9 1 1207 468 346 113 18 chr5 81615226 81615447 -70921812 + Tigger7 DNA MER2_type 57 298 -2193 1 1207 6049 104 8 29 chr5 81615524 81617030 -70920229 - L1_Mus3 LINE L1 0 6997 5205 1 1207 303 312 45 9 chr5 81617179 81617289 -70919970 + Tigger7 DNA MER2_type 2378 2491 0 1 1207 231 88 0 0 chr5 81617417 81617451 -70919808 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1207 396 283 70 9 chr5 81617474 81617588 -70919671 - RSINE1 SINE B4 -43 122 2 1 1207 31 0 0 0 chr5 81619314 81619345 -70917914 + AT_rich Low_complexity Low_complexity 1 31 0 1 1207 306 24 0 0 chr5 81619667 81619708 -70917551 + B1_Mus2 SINE Alu 106 146 -1 1 1207 1107 76 21 0 chr5 81619722 81619867 -70917392 + B1_Mus1 SINE Alu 1 148 0 1 1207 180 111 0 0 chr5 81620777 81620804 -70916455 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1 1207 358 371 68 24 chr5 81620925 81621176 -70916083 + MER47B DNA MER2_type 19 280 -138 1 1207 1680 141 110 17 chr5 81621559 81621905 -70915354 + Lx LINE L1 6276 6653 -1 1 1207 482 247 118 10 chr5 81622367 81622667 -70914592 - L1MC LINE L1 -3062 3084 2720 1 1207 26 64 0 0 chr5 81623284 81623331 -70913928 + AT_rich Low_complexity Low_complexity 1 47 0 1 1207 22 88 0 0 chr5 81625989 81626046 -70911213 + AT_rich Low_complexity Low_complexity 1 57 0 1 1207 213 235 15 0 chr5 81626133 81626201 -70911058 + T-rich Low_complexity Low_complexity 2 70 0 1 1207 24 32 0 0 chr5 81626358 81626389 -70910870 + AT_rich Low_complexity Low_complexity 1 31 0 1 1207 205 186 0 0 chr5 81627305 81627348 -70909911 + T-rich Low_complexity Low_complexity 4 46 0 1 1207 21 89 0 0 chr5 81627465 81627521 -70909738 + AT_rich Low_complexity Low_complexity 1 56 0 1 1207 22 80 0 0 chr5 81627571 81627621 -70909638 + AT_rich Low_complexity Low_complexity 1 50 0 1 1207 214 310 0 40 chr5 81628057 81628131 -70909128 + B1_Mur1 SINE Alu 67 137 -12 1 1207 220 229 0 0 chr5 81629310 81629358 -70907901 + T-rich Low_complexity Low_complexity 1 48 0 1 1207 182 62 0 30 chr5 81629368 81629401 -70907858 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 1207 1614 194 57 16 chr5 81629417 81629805 -70907454 - Lx2B LINE L1 -46 6954 6551 1 1207 271 204 39 50 chr5 81630634 81630815 -70906444 + (TA)n Simple_repeat Simple_repeat 1 179 0 1 1207 230 351 0 0 chr5 81631547 81631621 -70905638 - ID4_ SINE ID -1 82 9 1 1207 372 152 0 0 chr5 81631972 81632038 -70905221 + CT-rich Low_complexity Low_complexity 3 68 0 1 1207 632 246 86 87 chr5 81632148 81632549 -70904710 - L1ME1 LINE L1 -230 6012 5604 1 1207 5834 90 48 9 chr5 81633051 81633955 -70903304 - MusHAL1 LINE L1 -883 1829 891 1 1207 35408 35 0 0 chr5 81634151 81639615 -70897644 + L1Md_T LINE L1 29 5589 -297 1 1207 8946 7 0 0 chr5 81639615 81640611 -70896648 + L1Md_T LINE L1 5590 6585 0 1 1207 234 0 0 0 chr5 81640637 81640663 -70896596 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1207 3173 69 15 15 chr5 81640663 81641135 -70896124 - MusHAL1 LINE L1 -1797 915 444 1 1207 283 366 0 32 chr5 81641341 81641497 -70895762 + MIR3 SINE MIR 62 208 0 1 1207 24 0 0 0 chr5 81641711 81641735 -70895524 + AT_rich Low_complexity Low_complexity 1 24 0 1 1207 746 274 30 10 chr5 81641931 81642130 -70895129 - B3 SINE B2 -11 205 3 1 1207 23 0 0 0 chr5 81642688 81642711 -70894548 + AT_rich Low_complexity Low_complexity 1 23 0 1 1207 639 217 12 64 chr5 81642711 81642883 -70894376 - Lx4A LINE L1 0 7058 6896 1 1207 339 212 15 0 chr5 81642942 81643008 -70894251 + B1_Mur4 SINE Alu 1 67 -83 1 1207 441 0 0 0 chr5 81643019 81643068 -70894191 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1207 252 0 0 0 chr5 81643068 81643095 -70894164 + (GGGAGA)n Simple_repeat Simple_repeat 4 31 0 1 1207 396 380 13 7 chr5 81645109 81645260 -70891999 - RSINE1 SINE B4 -1 164 13 1 1207 180 0 0 0 chr5 81645387 81645407 -70891852 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1 1207 751 33 13 62 chr5 81645500 81645728 -70891531 + (TA)n Simple_repeat Simple_repeat 1 216 0 1 1207 21 0 0 0 chr5 81646066 81646087 -70891172 + AT_rich Low_complexity Low_complexity 1 21 0 1 1207 261 135 0 0 chr5 81646195 81646247 -70891012 + (TTA)n Simple_repeat Simple_repeat 3 54 0 1 1207 201 74 0 0 chr5 81647289 81647316 -70889943 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 1 1207 1459 0 6 6 chr5 81649219 81649391 -70887868 + (TCTA)n Simple_repeat Simple_repeat 2 173 0 2 1207 405 0 0 0 chr5 81649497 81649542 -70887717 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2 1207 205 161 0 0 chr5 81650387 81650418 -70886841 + G-rich Low_complexity Low_complexity 1 31 0 2 1207 458 293 86 62 chr5 81650464 81650708 -70886551 - MLT1B LTR MaLR -20 370 121 2 1207 572 405 27 33 chr5 81650726 81651091 -70886168 + MER21B LTR ERV1 22 384 -479 2 1207 207 0 0 0 chr5 81652028 81652051 -70885208 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1207 806 192 45 11 chr5 81654982 81655161 -70882098 + B2_Mm2 SINE B2 1 185 -10 2 1207 372 43 0 0 chr5 81656099 81656145 -70881114 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1207 3684 50 0 2 chr5 81656864 81657323 -70879936 - L1Md_F2 LINE L1 -12 6570 6113 2 1207 219 211 0 0 chr5 81657549 81657587 -70879672 - RSINE1 SINE B4 -125 40 3 2 1208 207 69 0 0 chr5 81657867 81657896 -70879363 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 2 1208 502 310 70 20 chr5 81658062 81658263 -70878996 + B3 SINE B2 1 211 -5 2 1208 206 170 0 21 chr5 81658268 81658316 -70878943 + A-rich Low_complexity Low_complexity 1 47 0 2 1208 279 306 73 56 chr5 81659609 81659841 -70877418 - L1MC4 LINE L1 -386 7656 7421 2 1208 466 315 78 60 chr5 81660591 81661094 -70876165 - L1MDa LINE L1 -5134 1499 988 2 1208 762 232 135 16 chr5 81661399 81661592 -70875667 + B3 SINE B2 1 216 0 2 1208 235 159 0 137 chr5 81661803 81661876 -70875383 + 4.5SRNA scRNA scRNA 24 86 -8 2 1208 269 150 77 77 chr5 81661825 81661890 -70875369 + RLTR25A LTR ERVK 518 582 -521 2 1208 787 59 0 0 chr5 81661833 81661934 -70875325 + B1_Mus2 SINE Alu 47 147 0 2 1208 191 81 0 51 chr5 81662075 81662114 -70875145 + (TTTAA)n Simple_repeat Simple_repeat 4 40 0 2 1208 272 120 40 0 chr5 81662117 81662167 -70875092 - B3 SINE B2 -7 209 158 2 1208 296 284 11 0 chr5 81662360 81662455 -70874804 - L1MDa LINE L1 -6486 147 52 2 1208 2480 139 12 7 chr5 81663219 81663625 -70873634 + Lx4A LINE L1 6648 7055 -3 2 1208 27 0 0 0 chr5 81665028 81665055 -70872204 + AT_rich Low_complexity Low_complexity 1 27 0 2 1208 520 235 15 36 chr5 81665528 81665665 -70871594 + B1_Mus1 SINE Alu 2 135 -13 2 1208 249 57 0 0 chr5 81665665 81665700 -70871559 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1208 337 369 7 14 chr5 81665752 81665895 -70871364 + ID_B1 SINE B4 82 223 -1 2 1208 641 263 32 48 chr5 81666074 81666235 -70871024 - B3 SINE B2 -31 185 27 2 1208 623 40 10 10 chr5 81666235 81666335 -70870924 - L1Md_F2 LINE L1 -12 6570 6471 2 1208 641 263 32 48 chr5 81666335 81666361 -70870898 - B3 SINE B2 -190 26 1 2 1208 3058 83 212 9 chr5 81666704 81667266 -70869993 + L1_Mus1 LINE L1 5997 6567 0 2 1208 3803 109 34 12 chr5 81667426 81668022 -70869237 - Lx3A LINE L1 -2 6979 6371 2 1208 2658 72 8 121 chr5 81668025 81668513 -70868746 + L1_Mur1 LINE L1 4314 4746 -1140 2 1208 1092 23 0 0 chr5 81668998 81669129 -70868130 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 2 1208 673 349 95 3 chr5 81669129 81669508 -70867751 + Lx8 LINE L1 6704 7117 -356 2 1208 351 0 0 0 chr5 81669811 81669850 -70867409 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1208 411 340 7 13 chr5 81669927 81670076 -70867183 - RSINE1 SINE B4 -4 161 14 2 1208 328 78 47 0 chr5 81670090 81670154 -70867105 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 2 1208 432 55 0 0 chr5 81670619 81670674 -70866585 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1208 252 0 0 0 chr5 81671630 81671658 -70865601 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1208 367 344 120 58 chr5 81672292 81672567 -70864692 - B4A SINE B4 0 292 1 2 1208 211 338 132 31 chr5 81672651 81672810 -70864449 + MIRc SINE MIR 45 219 -49 2 1208 23 33 0 0 chr5 81673831 81673861 -70863398 + AT_rich Low_complexity Low_complexity 1 30 0 2 1208 1085 84 0 0 chr5 81674565 81674708 -70862551 + B1_Mus2 SINE Alu 3 145 -2 2 1208 26 50 0 0 chr5 81674758 81674798 -70862461 + AT_rich Low_complexity Low_complexity 1 40 0 2 1208 226 326 86 24 chr5 81675144 81675314 -70861945 + MIR SINE MIR 47 228 -40 2 1208 217 113 36 36 chr5 81675328 81675383 -70861876 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 2 1208 546 43 0 0 chr5 81675457 81675526 -70861733 + (GA)n Simple_repeat Simple_repeat 2 70 0 2 1208 206 128 26 0 chr5 81675608 81675647 -70861612 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1208 276 268 64 25 chr5 81678443 81678546 -70858713 + MIR SINE MIR 82 180 -82 2 1208 26 30 0 0 chr5 81679609 81679642 -70857617 + AT_rich Low_complexity Low_complexity 1 33 0 2 1208 192 323 50 50 chr5 81679859 81679999 -70857260 + L2a LINE L2 3282 3421 -5 2 1208 603 343 88 16 chr5 81680528 81681022 -70856237 - Lx8 LINE L1 -181 7292 6749 2 1208 232 304 0 0 chr5 81681788 81681844 -70855415 + (TA)n Simple_repeat Simple_repeat 1 56 0 2 1208 365 58 19 0 chr5 81682926 81682978 -70854281 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2 1208 462 341 11 59 chr5 81683002 81683189 -70854070 - B3A SINE B2 -14 184 7 2 1208 21 36 0 0 chr5 81683222 81683250 -70854009 + AT_rich Low_complexity Low_complexity 1 28 0 2 1208 267 100 0 0 chr5 81683252 81683292 -70853967 - Lx9 LINE L1 -179 7465 7426 2 1208 1653 196 34 40 chr5 81685671 81686049 -70851210 - ORR1C1 LTR MaLR 0 378 3 2 1208 1875 39 4 0 chr5 81686293 81686522 -70850737 + L1Md_T LINE L1 6352 6581 -1 2 1208 22 35 0 0 chr5 81687117 81687146 -70850113 + AT_rich Low_complexity Low_complexity 1 29 0 2 1208 406 316 34 67 chr5 81687812 81687961 -70849298 + RSINE1 SINE B4 2 145 -20 2 1208 432 0 0 0 chr5 81688121 81688169 -70849090 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1208 1361 208 65 9 chr5 81689685 81690095 -70847164 - RLTR24 LTR ERV1 0 529 1 2 1208 2323 194 73 6 chr5 81690144 81690638 -70846621 - RLTR11A2 LTR ERVK 0 527 1 2 1208 197 83 28 0 chr5 81690715 81690751 -70846508 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1208 268 176 0 19 chr5 81690872 81690924 -70846335 - B1F1 SINE Alu -89 60 10 2 1208 248 191 13 105 chr5 81690924 81690948 -70846311 - B4 SINE B4 -147 145 77 2 1208 305 295 62 35 chr5 81693112 81693256 -70844003 + B1F SINE Alu 1 148 -1 2 1208 1135 268 70 6 chr5 81693305 81693636 -70843623 - ORR1D2 LTR MaLR -7 363 12 2 1208 843 10 0 0 chr5 81694050 81694146 -70843113 + (CA)n Simple_repeat Simple_repeat 2 97 0 2 1208 913 130 118 91 chr5 81694210 81694394 -70842865 - URR1A DNA MER1_type 0 226 41 2 1208 333 0 0 0 chr5 81694394 81694431 -70842828 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1208 913 130 118 91 chr5 81694431 81694466 -70842793 - URR1A DNA MER1_type -186 40 2 2 1208 261 0 0 0 chr5 81695361 81695390 -70841869 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1208 494 344 83 5 chr5 81696667 81696860 -70840399 - B3 SINE B2 -5 211 4 2 1208 23 33 0 0 chr5 81696890 81696920 -70840339 + AT_rich Low_complexity Low_complexity 1 30 0 2 1208 270 0 0 0 chr5 81696920 81696950 -70840309 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1208 333 0 0 0 chr5 81696950 81696986 -70840273 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 1208 226 274 92 46 chr5 81696986 81697051 -70840208 - RSINE1 SINE B4 -50 115 48 2 1208 848 226 54 29 chr5 81697105 81697310 -70839949 - B3 SINE B2 0 216 7 2 1208 306 298 58 50 chr5 81697747 81697867 -70839392 - LTR86C LTR ERVL -65 556 436 2 1208 224 352 40 0 chr5 81699040 81699165 -70838094 + MIRb SINE MIR 89 218 -50 2 1208 190 193 35 0 chr5 81701420 81701477 -70835782 + GA-rich Low_complexity Low_complexity 3 61 0 2 1208 221 109 42 42 chr5 81701478 81701526 -70835733 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 2 1208 483 18 0 0 chr5 81701526 81701582 -70835677 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1208 1209 236 107 15 chr5 81702223 81702614 -70834645 - Lx9 LINE L1 -115 7529 7103 2 1208 23 33 0 0 chr5 81703194 81703224 -70834035 + AT_rich Low_complexity Low_complexity 1 30 0 2 1208 603 325 24 15 chr5 81703224 81703430 -70833829 - B3 SINE B2 0 216 9 2 1208 1054 75 19 0 chr5 81705090 81705251 -70832008 + (TCTCCC)n Simple_repeat Simple_repeat 4 167 0 2 1208 262 350 121 28 chr5 81705408 81705590 -70831669 - RMER15 LTR ERVL -17 558 360 2 1208 215 369 57 0 chr5 81707077 81707199 -70830060 - L3 LINE CR1 -4359 130 2 2 1208 454 240 29 9 chr5 81707423 81707528 -70829731 - RSINE1 SINE B4 -48 117 11 2 1208 388 283 67 0 chr5 81708415 81708535 -70828724 + L2a LINE L2 3298 3425 -1 2 1208 603 67 0 0 chr5 81708673 81708762 -70828497 + (TC)n Simple_repeat Simple_repeat 2 90 0 2 1208 2619 147 41 36 chr5 81709025 81709492 -70827767 - MT2B LTR ERVL 0 601 133 2 1208 737 131 37 37 chr5 81709453 81709588 -70827671 + B2_Mm2 SINE B2 54 188 -7 2 1208 2783 167 15 11 chr5 81712517 81713037 -70824222 - RLTR28 LTR ERVL -2 522 1 2 1208 562 77 5 0 chr5 81713661 81713742 -70823517 - L1Md_F3 LINE L1 -2026 5670 5588 2 1208 333 198 0 0 chr5 81714121 81714207 -70823052 + (TG)n Simple_repeat Simple_repeat 1 86 0 2 1208 331 292 20 20 chr5 81714734 81714832 -70822427 - L2b LINE L2 -1 3374 3277 2 1208 2639 130 5 2 chr5 81715812 81716222 -70821037 - Lx LINE L1 0 6654 6244 2 1208 29 60 0 0 chr5 81717265 81717315 -70819944 + AT_rich Low_complexity Low_complexity 1 50 0 2 1208 404 225 25 90 chr5 81717395 81717517 -70819742 - PB1D9 SINE Alu -2 118 5 3 1208 2006 200 185 2 chr5 81717725 81718085 -70819174 - RMER15 LTR ERVL 0 575 147 3 1208 477 0 0 0 chr5 81718085 81718138 -70819121 + (TTTAA)n Simple_repeat Simple_repeat 4 56 0 3 1208 2006 200 185 2 chr5 81718138 81718259 -70819000 - RMER15 LTR ERVL -429 146 6 3 1208 276 333 0 0 chr5 81719633 81719708 -70817551 - B3A SINE B2 -123 75 1 3 1208 295 369 56 14 chr5 81719786 81719929 -70817330 + B1F1 SINE Alu 1 149 0 3 1208 324 103 0 0 chr5 81719940 81719998 -70817261 + (A)n Simple_repeat Simple_repeat 1 58 0 3 1208 311 17 32 65 chr5 81720158 81720220 -70817039 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 3 1208 30144 91 8 12 chr5 81720220 81726415 -70810844 - L1Md_F2 LINE L1 -40 6542 366 3 1208 24 32 0 0 chr5 81726416 81726447 -70810812 + AT_rich Low_complexity Low_complexity 1 31 0 3 1208 21 36 0 0 chr5 81726656 81726684 -70810575 + AT_rich Low_complexity Low_complexity 1 28 0 3 1208 25 0 0 0 chr5 81727186 81727211 -70810048 + AT_rich Low_complexity Low_complexity 1 25 0 3 1208 610 248 43 56 chr5 81729734 81730008 -70807251 - Lx4B LINE L1 0 7058 6693 3 1208 614 109 34 0 chr5 81730703 81730822 -70806437 + (TAGA)n Simple_repeat Simple_repeat 1 123 0 3 1208 354 251 12 6 chr5 81731698 81731862 -70805397 + (CATATA)n Simple_repeat Simple_repeat 6 170 0 3 1208 204 171 24 0 chr5 81734666 81734707 -70802552 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1208 192 282 138 49 chr5 81737013 81737136 -70800123 - MIR SINE MIR -106 156 23 3 1208 21 0 0 0 chr5 81737241 81737262 -70799997 + AT_rich Low_complexity Low_complexity 1 21 0 3 1208 22 0 0 0 chr5 81737276 81737298 -70799961 + AT_rich Low_complexity Low_complexity 1 22 0 3 1208 489 293 53 0 chr5 81738048 81738181 -70799078 + ID_B1 SINE B4 83 222 -2 3 1208 229 110 54 14 chr5 81738182 81738256 -70799003 + A-rich Low_complexity Low_complexity 1 77 0 3 1208 225 159 0 0 chr5 81738847 81738891 -70798368 + T-rich Low_complexity Low_complexity 1 44 0 3 1208 25 31 0 0 chr5 81740503 81740535 -70796724 + AT_rich Low_complexity Low_complexity 1 32 0 3 1208 21 0 0 0 chr5 81740816 81740837 -70796422 + AT_rich Low_complexity Low_complexity 1 21 0 3 1208 444 19 0 0 chr5 81740935 81740988 -70796271 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1208 386 141 32 51 chr5 81740988 81741145 -70796114 + (CAGAGA)n Simple_repeat Simple_repeat 3 156 0 3 1208 34 24 0 0 chr5 81743853 81743894 -70793365 + AT_rich Low_complexity Low_complexity 1 41 0 3 1208 24 32 0 0 chr5 81744622 81744653 -70792606 + AT_rich Low_complexity Low_complexity 1 31 0 3 1208 600 295 25 5 chr5 81745873 81746074 -70791185 + ID_B1 SINE B4 1 205 -19 3 1208 237 132 0 0 chr5 81746088 81746126 -70791133 + (ATG)n Simple_repeat Simple_repeat 1 38 0 3 1208 216 97 0 0 chr5 81746126 81746157 -70791102 + (GGA)n Simple_repeat Simple_repeat 1 31 0 3 1208 424 321 141 65 chr5 81746920 81747183 -70790076 - B4 SINE B4 -2 290 8 3 1208 5087 86 47 1 chr5 81747458 81748177 -70789082 - L1_Mus3 LINE L1 -6 6632 5881 3 1208 463 298 108 10 chr5 81748398 81748820 -70788439 - L1MB8 LINE L1 -140 6044 5586 3 1208 22 0 0 0 chr5 81749492 81749514 -70787745 + AT_rich Low_complexity Low_complexity 1 22 0 3 1208 438 100 0 0 chr5 81749522 81749592 -70787667 - Lx3B LINE L1 0 6973 6904 3 1208 198 71 0 0 chr5 81751684 81751712 -70785547 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1208 228 67 0 0 chr5 81753359 81753389 -70783870 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1208 240 35 0 0 chr5 81753663 81753692 -70783567 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 3 1208 23 33 0 0 chr5 81754337 81754367 -70782892 + AT_rich Low_complexity Low_complexity 1 30 0 3 1208 608 221 92 5 chr5 81754367 81754563 -70782696 - Lx9 LINE L1 -9 7635 7423 3 1208 298 346 0 19 chr5 81754669 81754775 -70782484 - PB1D10 SINE Alu -1 116 13 3 1208 24 53 0 0 chr5 81754849 81754887 -70782372 + AT_rich Low_complexity Low_complexity 1 38 0 3 1208 215 81 54 0 chr5 81755516 81755553 -70781706 + (GAAAA)n Simple_repeat Simple_repeat 5 43 0 3 1208 180 0 0 0 chr5 81756266 81756286 -70780973 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 3 1208 207 170 0 0 chr5 81756416 81756463 -70780796 + (GTTTG)n Simple_repeat Simple_repeat 5 51 0 3 1208 225 0 0 0 chr5 81758559 81758584 -70778675 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1208 468 288 14 14 chr5 81759216 81759357 -70777902 + ID_B1 SINE B4 82 222 -2 3 1208 972 157 0 0 chr5 81760105 81760258 -70777001 + B2_Mm2 SINE B2 1 153 -42 3 1208 449 17 0 17 chr5 81760258 81760317 -70776942 + (CATA)n Simple_repeat Simple_repeat 4 61 0 3 1208 333 0 0 0 chr5 81761827 81761864 -70775395 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1208 21 0 0 0 chr5 81761972 81761993 -70775266 + AT_rich Low_complexity Low_complexity 1 21 0 3 1208 1339 338 63 12 chr5 81762008 81762675 -70774584 - Lx8 LINE L1 -31 7442 6742 3 1208 270 176 0 0 chr5 81762831 81762882 -70774377 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 3 1208 297 0 0 0 chr5 81762882 81762915 -70774344 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1208 192 40 0 0 chr5 81764681 81764706 -70772553 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1208 360 0 0 0 chr5 81765928 81765968 -70771291 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1208 210 91 0 0 chr5 81765971 81766004 -70771255 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1208 1762 190 85 3 chr5 81766768 81767132 -70770127 - RMER6D LTR ERVK -13 707 314 3 1208 673 250 7 0 chr5 81767291 81767435 -70769824 + B1_Mus2 SINE Alu 3 147 0 3 1208 373 184 31 19 chr5 81769723 81769884 -70767375 + (CA)n Simple_repeat Simple_repeat 2 164 0 3 1208 317 329 0 0 chr5 81770213 81770295 -70766964 - PB1D10 SINE Alu -31 86 5 3 1208 21 36 0 0 chr5 81770610 81770638 -70766621 + AT_rich Low_complexity Low_complexity 1 28 0 3 1208 891 306 53 37 chr5 81770704 81771329 -70765930 - L1_Rod LINE L1 -333 5823 5144 3 1208 236 329 29 0 chr5 81772397 81772467 -70764792 + ID4 SINE ID 3 74 -9 3 1208 198 171 0 0 chr5 81772601 81772642 -70764617 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1208 446 61 15 0 chr5 81773117 81773183 -70764076 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 1208 567 96 0 0 chr5 81774651 81774734 -70762525 + (TG)n Simple_repeat Simple_repeat 2 84 0 3 1208 262 200 30 15 chr5 81775938 81776004 -70761255 + GA-rich Low_complexity Low_complexity 1 67 0 3 1208 183 80 0 0 chr5 81776710 81776735 -70760524 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 3 1208 1661 170 44 48 chr5 81778589 81779039 -70758220 - RMER17C LTR ERVK -519 439 16 3 1208 561 261 146 75 chr5 81779254 81779589 -70757670 - MTEb LTR MaLR -20 359 1 3 1208 1050 315 36 48 chr5 81779591 81780011 -70757248 - MTEb-int LTR MaLR -2 1578 1164 3 1208 192 40 0 0 chr5 81780082 81780107 -70757152 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1208 213 39 0 0 chr5 81781007 81781033 -70756226 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 3 1208 592 200 30 23 chr5 81781044 81781177 -70756082 - B1_Mur3 SINE Alu -11 138 5 3 1208 499 303 63 56 chr5 81781429 81781698 -70755561 + MER63D DNA AcHobo 767 1037 -24 3 1208 386 337 11 0 chr5 81781983 81782075 -70755184 + B1F SINE Alu 1 93 -56 3 1208 189 85 0 118 chr5 81782107 81782200 -70755059 + (TA)n Simple_repeat Simple_repeat 1 82 0 3 1208 252 217 18 54 chr5 81783302 81783414 -70753845 + (TA)n Simple_repeat Simple_repeat 2 109 0 3 1208 239 355 28 61 chr5 81783996 81784209 -70753050 + Tigger5 DNA MER2_type 68 273 -2133 3 1208 7968 50 0 16 chr5 81784343 81785402 -70751857 - L1Md_F2 LINE L1 -4 6578 5537 3 1208 3071 90 12 84 chr5 81785452 81785962 -70751297 - L1_Mus3 LINE L1 -2 6636 6164 3 1208 643 288 0 43 chr5 81786304 81786511 -70750748 - B3A SINE B2 0 198 1 3 1208 242 207 23 0 chr5 81786698 81786756 -70750503 - ID4_ SINE ID 0 83 24 3 1208 25 65 0 0 chr5 81788087 81788133 -70749126 + AT_rich Low_complexity Low_complexity 1 46 0 3 1209 922 88 81 0 chr5 81789386 81789522 -70747737 - B1_Mus2 SINE Alu 0 147 1 3 1209 236 326 111 10 chr5 81789537 81789636 -70747623 + B1_Mur1 SINE Alu 5 113 -36 3 1209 200 289 53 117 chr5 81789929 81790023 -70747236 - L2a LINE L2 -50 3376 3289 3 1209 444 319 101 22 chr5 81790043 81790181 -70747078 + B3A SINE B2 2 150 -48 3 1209 21 36 0 0 chr5 81791887 81791915 -70745344 + AT_rich Low_complexity Low_complexity 1 28 0 3 1209 767 156 89 0 chr5 81792094 81792229 -70745030 + B1_Mur4 SINE Alu 1 147 -3 3 1209 1241 62 12 0 chr5 81792501 81792743 -70744516 + (TCTA)n Simple_repeat Simple_repeat 1 245 0 3 1209 303 241 41 49 chr5 81793148 81793270 -70743989 + MIRb SINE MIR 148 268 0 3 1209 499 112 18 27 chr5 81793880 81793990 -70743269 + (TA)n Simple_repeat Simple_repeat 1 109 0 3 1209 237 83 0 0 chr5 81794688 81794724 -70742535 + (C)n Simple_repeat Simple_repeat 1 36 0 3 1209 221 222 0 16 chr5 81795112 81795176 -70742083 + GA-rich Low_complexity Low_complexity 4 66 0 3 1209 21 0 0 0 chr5 81795382 81795403 -70741856 + AT_rich Low_complexity Low_complexity 1 21 0 3 1209 458 239 147 53 chr5 81796077 81796267 -70740992 - MLT1B LTR MaLR -174 216 9 3 1209 330 256 0 0 chr5 81796506 81796588 -70740671 - ID4 SINE ID 0 83 2 3 1209 214 295 25 25 chr5 81797182 81797262 -70739997 - MIRm SINE MIR -124 152 73 3 1209 412 293 92 11 chr5 81797568 81797736 -70739523 + MLT1A0 LTR MaLR 199 382 -8 3 1209 218 229 33 0 chr5 81798052 81798113 -70739146 + CT-rich Low_complexity Low_complexity 2 64 0 4 1209 529 315 12 24 chr5 81798143 81798309 -70738950 - RSINE1 SINE B4 0 165 2 4 1209 759 335 39 35 chr5 81798818 81799100 -70738159 - B4A SINE B4 -8 284 2 4 1209 193 272 21 10 chr5 81799346 81799410 -70737849 + L2c LINE L2 3341 3423 -3 4 1209 222 62 0 0 chr5 81800457 81800489 -70736770 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1209 452 374 47 44 chr5 81800560 81800834 -70736425 - B4A SINE B4 -2 290 16 4 1209 216 0 0 0 chr5 81801454 81801478 -70735781 + (TTA)n Simple_repeat Simple_repeat 3 26 0 4 1209 214 140 19 57 chr5 81801712 81801765 -70735494 + (TTAG)n Simple_repeat Simple_repeat 1 51 0 4 1209 254 98 20 0 chr5 81801765 81801816 -70735443 + (TTTTTG)n Simple_repeat Simple_repeat 4 55 0 4 1209 777 185 0 0 chr5 81801816 81801951 -70735308 - B1_Mur3 SINE Alu 0 149 15 4 1209 1308 61 122 0 chr5 81801960 81802140 -70735119 - L1Md_T LINE L1 0 6582 6381 4 1209 1170 112 0 0 chr5 81803160 81803338 -70733921 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 4 1209 468 0 0 0 chr5 81803340 81803392 -70733867 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 4 1209 978 48 0 0 chr5 81803403 81803528 -70733731 - B1_Mus1 SINE Alu -11 137 13 4 1209 228 322 104 113 chr5 81805041 81805387 -70731872 - MLT1F2 LTR MaLR -38 522 180 4 1209 2093 108 12 12 chr5 81806724 81807061 -70730198 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1209 55074 29 9 2 chr5 81807061 81813486 -70723773 + IAPEz-int LTR ERVK 8 6478 -3 4 1209 2093 108 12 12 chr5 81813490 81813827 -70723432 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1209 339 65 0 0 chr5 81813929 81813975 -70723284 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1209 204 261 0 0 chr5 81814010 81814075 -70723184 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1209 462 18 0 0 chr5 81815308 81815363 -70721896 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1209 564 314 43 14 chr5 81815462 81815672 -70721587 - B3 SINE B2 0 216 1 4 1209 24 53 0 0 chr5 81816438 81816476 -70720783 + AT_rich Low_complexity Low_complexity 1 38 0 4 1209 706 247 40 40 chr5 81817388 81817590 -70719669 + B3 SINE B2 15 216 0 4 1209 1130 88 0 0 chr5 81817664 81817812 -70719447 + B1_Mus1 SINE Alu 1 148 0 4 1209 401 54 0 0 chr5 81817900 81817956 -70719303 + L1_Mus2 LINE L1 6511 6566 0 4 1209 203 152 0 21 chr5 81818217 81818264 -70718995 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1209 387 41 0 0 chr5 81819509 81819558 -70717701 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1209 203 156 0 0 chr5 81820278 81820310 -70716949 + A-rich Low_complexity Low_complexity 5 36 0 4 1209 279 0 0 0 chr5 81820869 81820900 -70716359 + (TA)n Simple_repeat Simple_repeat 1 31 0 4 1209 280 280 29 20 chr5 81820900 81821002 -70716257 - L1ME3A LINE L1 -41 6132 6030 4 1209 25 75 0 0 chr5 81822268 81822321 -70714938 + AT_rich Low_complexity Low_complexity 1 53 0 4 1209 24 0 0 0 chr5 81822430 81822454 -70714805 + AT_rich Low_complexity Low_complexity 1 24 0 4 1209 1543 235 77 2 chr5 81822507 81822972 -70714287 - Lx9 LINE L1 -1 7643 7144 4 1209 1011 209 38 14 chr5 81823310 81823519 -70713740 - B3 SINE B2 -2 214 1 4 1209 21 0 0 0 chr5 81825860 81825881 -70711378 + AT_rich Low_complexity Low_complexity 1 21 0 4 1209 27 0 0 0 chr5 81826018 81826045 -70711214 + AT_rich Low_complexity Low_complexity 1 27 0 4 1209 1622 42 0 0 chr5 81826380 81826572 -70710687 - B2_Mm1t SINE B2 -1 192 1 4 1209 430 233 43 73 chr5 81827512 81827712 -70709547 - RLTR11B LTR ERVK -35 493 284 4 1209 218 283 10 10 chr5 81827770 81827797 -70709462 + polypyrimidine Low_complexity Low_complexity 74 101 0 4 1209 714 82 0 0 chr5 81827797 81827895 -70709364 + (TCC)n Simple_repeat Simple_repeat 2 99 0 4 1209 218 283 10 10 chr5 81827895 81827967 -70709292 + CT-rich Low_complexity Low_complexity 3 73 0 4 1209 6516 109 48 14 chr5 81827973 81829005 -70708254 - Lx3A LINE L1 -7 6974 5907 4 1209 262 80 25 51 chr5 81829006 81829085 -70708174 + T-rich Low_complexity Low_complexity 2 78 0 4 1209 14089 87 25 108 chr5 81829085 81831816 -70705443 - Lx3A LINE L1 -1087 5922 3465 4 1209 588 115 122 109 chr5 81831827 81831983 -70705276 - Lx3B LINE L1 -4 6969 6812 4 1209 833 236 38 30 chr5 81831983 81832245 -70705014 - RLTR11B LTR ERVK -189 264 1 4 1209 492 316 123 11 chr5 81833163 81833342 -70703917 + B3 SINE B2 8 206 -10 4 1209 421 65 0 0 chr5 81835157 81835219 -70702040 + L1_Mus2 LINE L1 6504 6565 -1 4 1209 219 314 55 55 chr5 81835647 81835738 -70701521 + B3A SINE B2 70 160 -38 4 1209 546 109 0 0 chr5 81835758 81835850 -70701409 + (CA)n Simple_repeat Simple_repeat 2 93 0 4 1209 29 28 0 0 chr5 81835851 81835887 -70701372 + AT_rich Low_complexity Low_complexity 1 36 0 4 1209 300 138 0 0 chr5 81838102 81838167 -70699092 + (T)n Simple_repeat Simple_repeat 1 65 0 4 1209 460 346 27 38 chr5 81838325 81838347 -70698912 - B4A SINE B4 0 292 271 4 1209 431 35 18 0 chr5 81838347 81838404 -70698855 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1209 460 346 27 38 chr5 81838404 81838567 -70698692 - B4A SINE B4 -22 270 109 4 1209 22 56 0 0 chr5 81838651 81838687 -70698572 + AT_rich Low_complexity Low_complexity 1 36 0 4 1209 27 29 0 0 chr5 81839491 81839525 -70697734 + AT_rich Low_complexity Low_complexity 1 34 0 4 1209 555 16 0 0 chr5 81839678 81839742 -70697517 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1209 331 244 26 0 chr5 81840863 81840941 -70696318 - ID_B1 SINE B4 -1 223 144 4 1209 21 0 0 0 chr5 81841204 81841225 -70696034 + AT_rich Low_complexity Low_complexity 1 21 0 4 1209 27 0 0 0 chr5 81843205 81843232 -70694027 + AT_rich Low_complexity Low_complexity 1 27 0 4 1209 2909 90 18 5 chr5 81843366 81843767 -70693492 - MTB_Mm LTR MaLR -1 406 1 4 1209 22 56 0 0 chr5 81845864 81845900 -70691359 + AT_rich Low_complexity Low_complexity 1 36 0 4 1209 23 0 0 0 chr5 81845921 81845944 -70691315 + AT_rich Low_complexity Low_complexity 1 23 0 4 1209 243 0 0 0 chr5 81846239 81846266 -70690993 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1209 360 279 35 92 chr5 81846459 81846633 -70690626 + RSINE1 SINE B4 2 165 0 4 1209 288 0 0 0 chr5 81846713 81846745 -70690514 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1209 21 36 0 0 chr5 81846848 81846876 -70690383 + AT_rich Low_complexity Low_complexity 1 28 0 4 1209 306 0 0 0 chr5 81847106 81847140 -70690119 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1209 345 266 0 0 chr5 81847194 81847273 -70689986 + ID_B1 SINE B4 134 212 -12 4 1209 252 190 49 49 chr5 81847225 81847286 -70689973 + B1F SINE Alu 87 147 -2 4 1209 225 172 48 65 chr5 81847325 81847387 -70689872 - Lx9 LINE L1 -1753 5891 5831 4 1209 375 137 0 0 chr5 81847390 81847463 -70689796 + (TC)n Simple_repeat Simple_repeat 2 74 0 4 1209 291 274 221 22 chr5 81847463 81847694 -70689565 - L1M2 LINE L1 -519 5781 5505 4 1209 4550 228 47 90 chr5 81848054 81848431 -70688828 - Lx7 LINE L1 0 7696 7325 4 1209 252 0 0 0 chr5 81848431 81848459 -70688800 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 4 1209 4550 228 47 90 chr5 81848459 81849418 -70687841 - Lx7 LINE L1 -372 7324 6417 4 1209 23 78 0 0 chr5 81849901 81849952 -70687307 + AT_rich Low_complexity Low_complexity 1 51 0 4 1209 702 0 0 0 chr5 81850549 81850627 -70686632 + (ATGTG)n Simple_repeat Simple_repeat 1 78 0 4 1209 27 0 0 0 chr5 81851068 81851095 -70686164 + AT_rich Low_complexity Low_complexity 1 27 0 4 1209 186 43 0 0 chr5 81851534 81851557 -70685702 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 1209 735 282 28 42 chr5 81851568 81851857 -70685402 + B4 SINE B4 3 287 -5 4 1209 188 349 62 16 chr5 81852236 81852364 -70684895 - MIR SINE MIR -28 234 101 4 1209 1254 181 25 69 chr5 81852628 81852948 -70684311 - RMER1B Other Other 0 1066 761 4 1209 928 65 16 0 chr5 81852953 81853076 -70684183 + B1_Mm SINE Alu 11 135 -12 4 1209 207 0 0 0 chr5 81853077 81853100 -70684159 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1209 8628 16 1 0 chr5 81853157 81854470 -70682789 - L1Md_A LINE L1 0 6582 5269 4 1209 3576 10 7 0 chr5 81854470 81854881 -70682378 + L1Md_A LINE L1 4850 5263 -620 4 1209 724 238 94 3 chr5 81854987 81855300 -70681959 - RMER1B Other Other -511 555 122 4 1209 516 63 63 0 chr5 81855800 81855879 -70681380 - Lx2 LINE L1 -1 6996 6913 4 1209 254 309 12 0 chr5 81856604 81856685 -70680574 - L2a LINE L2 -11 3415 3334 4 1209 247 234 45 9 chr5 81856846 81856958 -70680301 + (TA)n Simple_repeat Simple_repeat 2 117 0 4 1209 2997 208 47 98 chr5 81857532 81858431 -70678828 - Lx7 LINE L1 -2 7694 6842 4 1209 555 56 0 0 chr5 81858810 81858881 -70678378 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 4 1209 1566 143 154 0 chr5 81858888 81859168 -70678091 - Lx2 LINE L1 -2 6995 6673 4 1209 250 381 40 29 chr5 81859744 81859917 -70677342 + B4A SINE B4 106 280 -12 4 1209 513 282 99 181 chr5 81861160 81861575 -70675684 + RMER20B LTR ERVK 219 599 -28 4 1209 189 107 0 0 chr5 81862479 81862507 -70674752 + (GGAGAA)n Simple_repeat Simple_repeat 3 30 0 4 1209 441 0 0 0 chr5 81863649 81863698 -70673561 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1209 244 161 16 16 chr5 81866303 81866366 -70670893 + GA-rich Low_complexity Low_complexity 5 67 0 4 1209 344 256 33 0 chr5 81866628 81866718 -70670541 + Lx9 LINE L1 7394 7486 -158 4 1209 3967 68 0 0 chr5 81866712 81867215 -70670044 - L1Md_T LINE L1 -147 6435 5933 4 1209 1013 64 0 0 chr5 81867215 81867356 -70669903 + L1Md_A LINE L1 6442 6582 0 4 1209 186 43 0 0 chr5 81867397 81867420 -70669839 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1209 342 190 60 0 chr5 81867430 81867530 -70669729 + Lx9 LINE L1 7532 7637 -7 4 1209 812 234 207 19 chr5 81867789 81868103 -70669156 - ORR1D1 LTR MaLR 0 374 2 4 1209 356 281 63 18 chr5 81868474 81868617 -70668642 - B1F SINE Alu 0 147 8 4 1209 1025 139 0 16 chr5 81868637 81868820 -70668439 + CT-rich Low_complexity Low_complexity 1 180 0 4 1209 756 99 0 0 chr5 81868821 81868932 -70668327 + (TTTC)n Simple_repeat Simple_repeat 1 111 0 5 1209 22 70 0 0 chr5 81869081 81869124 -70668135 + AT_rich Low_complexity Low_complexity 1 43 0 5 1209 204 214 24 0 chr5 81869640 81869682 -70667577 + GA-rich Low_complexity Low_complexity 6 48 0 5 1209 609 330 30 10 chr5 81870153 81870355 -70666904 + ID_B1 SINE B4 12 217 -7 5 1209 1133 78 0 0 chr5 81870364 81870506 -70666753 + B1_Mus2 SINE Alu 1 142 -5 5 1209 919 291 176 13 chr5 81871048 81871508 -70665751 - Lx8 LINE L1 -9 7464 6930 5 1209 539 112 0 11 chr5 81872143 81872233 -70665026 + (TA)n Simple_repeat Simple_repeat 2 90 0 5 1209 544 260 7 46 chr5 81872465 81872618 -70664641 - B1_Mur3 SINE Alu -1 148 2 5 1209 1195 105 20 25 chr5 81872819 81873015 -70664244 - B2_Mm2 SINE B2 0 195 1 5 1209 511 15 0 29 chr5 81873016 81873086 -70664173 + (TTTTC)n Simple_repeat Simple_repeat 3 70 0 5 1209 400 262 14 47 chr5 81875030 81875178 -70662081 + Lx7 LINE L1 7224 7366 -330 5 1209 279 365 10 0 chr5 81875419 81875523 -70661736 - RSINE1 SINE B4 -1 164 60 5 1209 505 231 80 22 chr5 81875703 81875840 -70661419 + B1_Mur2 SINE Alu 5 149 0 5 1209 1325 144 101 15 chr5 81875910 81876177 -70661082 - Lx2A1 LINE L1 -3 7005 6716 5 1209 228 184 0 0 chr5 81876239 81876288 -70660971 + CT-rich Low_complexity Low_complexity 3 51 0 5 1209 229 336 72 58 chr5 81876407 81876546 -70660713 - MIRb SINE MIR -127 141 1 5 1209 238 326 44 58 chr5 81877031 81877168 -70660091 - MLT1A1 LTR MaLR 0 408 274 5 1209 1534 183 3 20 chr5 81877972 81878278 -70658981 - Lx4B LINE L1 -8 7050 6750 5 1209 24766 10 0 36 chr5 81878757 81880621 -70656638 - L1Md_A LINE L1 -2 6580 4877 5 1209 8922 8 0 0 chr5 81880621 81881617 -70655642 + L1Md_T LINE L1 5587 6582 0 5 1209 24766 8 0 57 chr5 81881617 81883570 -70653689 - L1Md_A LINE L1 -1007 4876 2941 5 1209 338 313 146 77 chr5 81883646 81884000 -70653259 - MLT1C LTR MaLR -12 378 1 5 1209 22 35 0 0 chr5 81884603 81884632 -70652627 + AT_rich Low_complexity Low_complexity 1 29 0 5 1209 378 107 0 0 chr5 81884996 81885052 -70652207 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1209 219 139 0 0 chr5 81885052 81885088 -70652171 + (TA)n Simple_repeat Simple_repeat 1 36 0 5 1209 548 300 71 46 chr5 81885973 81886256 -70651003 + B4A SINE B4 3 292 0 5 1209 387 0 0 0 chr5 81886276 81886319 -70650940 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1209 2050 302 9 23 chr5 81886364 81887062 -70650197 + Lx9 LINE L1 6480 7167 -477 5 1209 191 88 0 29 chr5 81887467 81887502 -70649757 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1209 883 299 94 24 chr5 81887847 81888261 -70648998 - Lx8 LINE L1 -266 7207 6765 5 1209 393 215 0 0 chr5 81888309 81888402 -70648857 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 1209 469 316 51 6 chr5 81888434 81888590 -70648669 - B3A SINE B2 -30 168 6 5 1209 351 0 0 0 chr5 81889119 81889158 -70648101 + (TA)n Simple_repeat Simple_repeat 1 39 0 5 1209 393 340 92 30 chr5 81889678 81890006 -70647253 + L1MA9 LINE L1 5929 6276 -36 5 1209 360 43 0 0 chr5 81890227 81890273 -70646986 + (T)n Simple_repeat Simple_repeat 1 46 0 5 1209 381 267 211 0 chr5 81890354 81890515 -70646744 - Lx9 LINE L1 -44 7600 7406 5 1209 335 100 83 0 chr5 81890838 81890898 -70646361 - Lx2B LINE L1 -846 6154 6090 5 1209 1223 146 9 2 chr5 81890870 81891093 -70646166 - Lx2B LINE L1 -1033 5975 5749 5 1209 2151 173 11 42 chr5 81891079 81891370 -70645889 + L1_Mur2 LINE L1 3688 3970 -1907 5 1209 1207 113 16 21 chr5 81891370 81891559 -70645700 + B2_Mm2 SINE B2 1 188 -7 5 1209 2151 173 11 42 chr5 81891559 81891719 -70645540 + L1_Mur2 LINE L1 3971 4125 -1752 5 1209 40 59 0 0 chr5 81891976 81892044 -70645215 + AT_rich Low_complexity Low_complexity 1 68 0 5 1209 294 369 26 39 chr5 81893582 81893737 -70643522 - RSINE1 SINE B4 -10 155 3 5 1209 541 344 5 54 chr5 81896305 81896529 -70640730 + ID_B1 SINE B4 10 222 -2 5 1209 387 105 0 0 chr5 81896554 81896611 -70640648 + B1_Mur4 SINE Alu 94 150 0 5 1209 25 51 0 0 chr5 81897313 81897352 -70639907 + AT_rich Low_complexity Low_complexity 1 39 0 5 1209 367 291 197 29 chr5 81897652 81897896 -70639363 + B4 SINE B4 2 286 -6 5 1209 498 61 0 0 chr5 81897953 81898019 -70639240 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1209 1565 247 80 8 chr5 81898480 81898867 -70638392 - MTD LTR MaLR 0 419 5 5 1209 309 109 0 0 chr5 81898932 81898978 -70638281 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1209 490 311 58 29 chr5 81898995 81899134 -70638125 - RSINE1 SINE B4 -20 145 3 5 1209 218 189 0 0 chr5 81899692 81899729 -70637530 + GA-rich Low_complexity Low_complexity 4 40 0 5 1209 27 29 0 0 chr5 81900588 81900622 -70636637 + AT_rich Low_complexity Low_complexity 1 34 0 5 1209 28 29 0 0 chr5 81901028 81901063 -70636196 + AT_rich Low_complexity Low_complexity 1 35 0 5 1209 600 309 19 26 chr5 81901719 81901875 -70635384 - RSINE1 SINE B4 0 165 11 5 1209 219 88 0 0 chr5 81902121 81902155 -70635104 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1209 261 0 0 0 chr5 81903102 81903131 -70634128 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1209 195 42 0 0 chr5 81903765 81903789 -70633470 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1209 257 0 30 0 chr5 81904043 81904076 -70633183 + (TAAAAA)n Simple_repeat Simple_repeat 1 34 0 5 1209 249 180 0 0 chr5 81905963 81906013 -70631246 + CT-rich Low_complexity Low_complexity 2 51 0 5 1209 431 317 52 52 chr5 81907411 81907604 -70629655 + B3A SINE B2 1 193 -5 5 1209 596 218 13 52 chr5 81907649 81907804 -70629455 + B1_Mur1 SINE Alu 1 149 0 5 1209 294 16 78 16 chr5 81908222 81908286 -70628973 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 5 1209 485 258 11 8 chr5 81908960 81909122 -70628137 - L1_Mus3 LINE L1 -747 5891 5713 5 1209 432 0 0 0 chr5 81909192 81909240 -70628019 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1209 310 192 27 63 chr5 81909246 81909357 -70627902 + Lx9 LINE L1 7532 7638 -6 5 1209 231 309 143 0 chr5 81909568 81909652 -70627607 - MLT1D LTR MaLR -397 108 13 5 1209 207 0 0 0 chr5 81911430 81911453 -70625806 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1209 182 37 0 36 chr5 81911790 81911818 -70625441 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1209 328 368 46 96 chr5 81911853 81912334 -70624925 - MTE-int LTR MaLR -1082 498 42 5 1209 901 178 27 14 chr5 81912428 81912610 -70624649 + B2_Mm2 SINE B2 1 195 -3 5 1209 304 374 65 14 chr5 81912863 81913080 -70624179 - ORR1E LTR MaLR -131 228 1 5 1209 3680 267 93 22 chr5 81913538 81914948 -70622311 - Lx9 LINE L1 0 7644 6135 5 1209 218 179 35 35 chr5 81916158 81916216 -70621043 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 5 1209 1356 185 91 19 chr5 81916249 81916568 -70620691 - ORR1B1 LTR MaLR -12 382 41 5 1209 222 116 0 0 chr5 81917678 81917721 -70619538 + (A)n Simple_repeat Simple_repeat 1 43 0 5 1209 537 148 9 56 chr5 81918539 81918646 -70618613 - B1_Mus1 SINE Alu -46 102 1 5 1209 328 241 38 121 chr5 81918646 81918671 -70618588 - MT2B LTR ERVL -345 256 136 5 1209 214 323 0 71 chr5 81919129 81919199 -70618060 - ID4 SINE ID 0 83 19 5 1209 265 88 0 50 chr5 81919410 81919470 -70617789 + (TTTTTG)n Simple_repeat Simple_repeat 2 58 0 5 1210 26 74 0 0 chr5 81920562 81920616 -70616643 + AT_rich Low_complexity Low_complexity 1 54 0 5 1210 21 0 0 0 chr5 81921380 81921401 -70615858 + AT_rich Low_complexity Low_complexity 1 21 0 5 1210 312 329 38 0 chr5 81921900 81921979 -70615280 + RSINE1 SINE B4 83 164 -1 5 1210 21 0 0 0 chr5 81922728 81922749 -70614510 + AT_rich Low_complexity Low_complexity 1 21 0 5 1210 459 0 0 0 chr5 81922833 81922884 -70614375 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1210 201 211 0 0 chr5 81923067 81923119 -70614140 + (TTG)n Simple_repeat Simple_repeat 3 54 0 5 1210 550 337 0 26 chr5 81923279 81923468 -70613791 + B3A SINE B2 1 184 -14 5 1210 21 0 0 0 chr5 81923510 81923531 -70613728 + AT_rich Low_complexity Low_complexity 1 21 0 5 1210 21 57 0 0 chr5 81923740 81923775 -70613484 + AT_rich Low_complexity Low_complexity 1 35 0 5 1210 865 177 7 0 chr5 81924888 81925035 -70612224 + B1_Mur4 SINE Alu 3 150 0 5 1210 288 89 0 0 chr5 81925121 81925166 -70612093 - Lx9 LINE L1 -7 7637 7593 5 1210 626 209 0 15 chr5 81926056 81926187 -70611072 + B1_Mus1 SINE Alu 20 148 0 5 1210 282 180 0 0 chr5 81927591 81927652 -70609607 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 5 1210 21 0 0 0 chr5 81927858 81927879 -70609380 + AT_rich Low_complexity Low_complexity 1 21 0 5 1210 22 35 0 0 chr5 81928647 81928676 -70608583 + AT_rich Low_complexity Low_complexity 1 29 0 5 1210 1459 201 206 3 chr5 81930141 81930491 -70606768 - MTC LTR MaLR 0 421 1 5 1210 225 191 0 0 chr5 81930911 81930958 -70606301 + A-rich Low_complexity Low_complexity 1 47 0 5 1210 22 88 0 0 chr5 81931054 81931111 -70606148 + AT_rich Low_complexity Low_complexity 1 57 0 5 1210 892 157 0 8 chr5 81931606 81931864 -70605395 + (TG)n Simple_repeat Simple_repeat 1 255 0 5 1210 888 141 0 17 chr5 81931887 81932067 -70605192 + (TG)n Simple_repeat Simple_repeat 1 177 0 5 1210 584 308 72 0 chr5 81932067 81932262 -70604997 + B3 SINE B2 6 214 -2 5 1210 225 94 0 0 chr5 81933760 81933792 -70603467 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1210 209 272 114 33 chr5 81934226 81934375 -70602884 + MIRb SINE MIR 100 264 -4 5 1210 331 345 5 71 chr5 81936339 81936524 -70600735 + B3A SINE B2 1 177 -21 5 1210 387 0 0 0 chr5 81936524 81936567 -70600692 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1210 331 345 5 71 chr5 81936567 81936593 -70600666 + B3A SINE B2 178 198 0 5 1210 216 0 0 0 chr5 81938576 81938600 -70598659 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 6 1210 193 70 70 0 chr5 81939917 81939960 -70597299 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 6 1210 301 250 45 104 chr5 81940352 81940486 -70596773 - L1M4 LINE L1 -4973 1569 1444 6 1210 21 0 0 0 chr5 81940969 81940990 -70596269 + AT_rich Low_complexity Low_complexity 1 21 0 6 1210 306 0 0 0 chr5 81941819 81941853 -70595406 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1210 631 230 14 0 chr5 81942568 81942707 -70594552 + B1F SINE Alu 2 142 -7 6 1210 265 220 14 246 chr5 81942762 81942833 -70594426 + MT2B LTR ERVL 103 221 -363 6 1210 643 201 0 158 chr5 81942833 81942923 -70594336 + B1_Mur4 SINE Alu 2 67 -83 6 1210 1424 23 0 0 chr5 81942923 81943097 -70594162 - L1Md_A LINE L1 0 6582 6409 6 1210 265 196 13 296 chr5 81943097 81943137 -70594122 + MT2B LTR ERVL 222 257 -344 6 1210 643 201 0 158 chr5 81943137 81943177 -70594082 + B1_Mur4 SINE Alu 68 145 -5 6 1210 240 59 0 0 chr5 81943866 81943900 -70593359 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1210 328 179 200 67 chr5 81943957 81944047 -70593212 - B1_Mus1 SINE Alu -18 102 1 6 1210 28 71 0 0 chr5 81944330 81944386 -70592873 + AT_rich Low_complexity Low_complexity 1 56 0 6 1210 207 0 0 0 chr5 81944941 81944964 -70592295 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1210 621 144 0 0 chr5 81945055 81945159 -70592100 + (TA)n Simple_repeat Simple_repeat 1 104 0 6 1210 1023 174 34 15 chr5 81946639 81946843 -70590416 + B3 SINE B2 1 208 -8 6 1210 21 0 0 0 chr5 81946844 81946865 -70590394 + AT_rich Low_complexity Low_complexity 1 21 0 6 1210 230 259 45 45 chr5 81946865 81946954 -70590305 - MER113 DNA MER1_type -305 216 128 6 1210 234 0 0 0 chr5 81947165 81947191 -70590068 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1210 208 186 34 0 chr5 81947558 81947617 -70589642 + CT-rich Low_complexity Low_complexity 2 62 0 6 1210 197 132 26 0 chr5 81947951 81947989 -70589270 + CT-rich Low_complexity Low_complexity 3 41 0 6 1210 1081 137 44 0 chr5 81949844 81950026 -70587233 + B2_Mm2 SINE B2 1 190 -5 6 1210 371 360 39 6 chr5 81951381 81951560 -70585699 - Tigger7 DNA MER2_type -1 2490 2306 6 1210 349 315 93 19 chr5 81951610 81951867 -70585392 - Tigger7 DNA MER2_type -2204 287 11 6 1210 3516 88 17 0 chr5 81952306 81952784 -70584475 - L1_Mus4 LINE L1 -8 6628 6143 6 1210 683 271 32 86 chr5 81954463 81954649 -70582610 - B3A SINE B2 -14 184 9 6 1210 405 0 0 0 chr5 81954651 81954696 -70582563 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1210 319 321 17 52 chr5 81954770 81954885 -70582374 - PB1D7 SINE Alu -1 119 9 6 1210 3187 63 2 0 chr5 81956215 81956614 -70580645 - MTB LTR MaLR 0 400 1 6 1210 1218 33 0 0 chr5 81957009 81957161 -70580098 + L1Md_A LINE L1 6430 6581 -1 6 1210 23 33 0 0 chr5 81957630 81957660 -70579599 + AT_rich Low_complexity Low_complexity 1 30 0 6 1210 926 100 0 7 chr5 81957881 81958022 -70579237 + (TTC)n Simple_repeat Simple_repeat 1 140 0 6 1210 2136 186 50 0 chr5 81959836 81960235 -70577024 - MTC LTR MaLR -2 419 1 6 1210 793 159 14 0 chr5 81960857 81960995 -70576264 - ORR1C2 LTR MaLR 0 384 245 6 1210 180 0 0 0 chr5 81961040 81961060 -70576199 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 1210 301 304 39 0 chr5 81961061 81961163 -70576096 - ORR1C2 LTR MaLR -268 106 1 6 1210 588 29 0 0 chr5 81961219 81961289 -70575970 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 6 1210 1137 199 44 0 chr5 81961828 81962034 -70575225 + URR1B DNA MER1_type 1 215 -10 6 1210 399 292 17 92 chr5 81961830 81962068 -70575191 - CYRA11_Mm Unknown Y-chromosome -233 384 165 6 1210 447 252 33 92 chr5 81962059 81962212 -70575047 + B3A SINE B2 39 182 -16 6 1210 24 77 0 0 chr5 81962215 81962267 -70574992 + AT_rich Low_complexity Low_complexity 1 52 0 6 1210 468 216 137 0 chr5 81963512 81963651 -70573608 - Lx4B LINE L1 -47 7011 6854 6 1210 214 195 0 0 chr5 81965876 81965917 -70571342 + (TTA)n Simple_repeat Simple_repeat 2 42 0 6 1210 31 58 0 0 chr5 81965945 81965997 -70571262 + AT_rich Low_complexity Low_complexity 1 52 0 6 1210 194 0 0 37 chr5 81966417 81966444 -70570815 + (TAA)n Simple_repeat Simple_repeat 1 26 0 6 1210 790 317 11 96 chr5 81967856 81968199 -70569060 - MTE2b LTR MaLR -60 319 1 6 1210 227 333 202 0 chr5 81968469 81968583 -70568676 + ORR1E LTR MaLR 76 212 -147 6 1210 285 344 11 0 chr5 81968876 81968966 -70568293 - RMER15 LTR ERVL -54 521 431 6 1210 281 364 45 23 chr5 81969588 81969765 -70567494 - ORR1E LTR MaLR -178 181 1 6 1210 31 0 0 0 chr5 81969777 81969808 -70567451 + AT_rich Low_complexity Low_complexity 1 31 0 6 1210 21 0 0 0 chr5 81970319 81970340 -70566919 + AT_rich Low_complexity Low_complexity 1 21 0 6 1210 940 251 24 76 chr5 81970866 81971156 -70566103 - ORR1E LTR MaLR -96 274 1 6 1210 237 224 43 43 chr5 81971758 81971828 -70565431 - ID SINE ID -154 70 1 6 1210 30 27 0 0 chr5 81972192 81972229 -70565030 + AT_rich Low_complexity Low_complexity 1 37 0 6 1210 629 302 0 52 chr5 81972552 81972744 -70564515 - B3A SINE B2 -6 192 11 6 1210 267 346 12 0 chr5 81972916 81972997 -70564262 + ID SINE ID 7 88 -136 6 1210 276 349 22 0 chr5 81972997 81973031 -70564228 + ID4 SINE ID 7 127 -25 6 1210 461 241 0 0 chr5 81975193 81975280 -70561979 + BC1_Mm scRNA scRNA 5 91 -61 6 1210 491 325 0 18 chr5 81975771 81975937 -70561322 + RSINE1 SINE B4 3 165 0 6 1210 31 58 0 0 chr5 81976795 81976847 -70560412 + AT_rich Low_complexity Low_complexity 1 52 0 6 1210 235 113 47 31 chr5 81976853 81976917 -70560342 + (TA)n Simple_repeat Simple_repeat 1 65 0 6 1210 288 77 0 0 chr5 81976917 81976956 -70560303 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1210 1786 187 49 19 chr5 81977645 81978010 -70559249 - ORR1C1 LTR MaLR -2 376 1 6 1210 3583 124 88 27 chr5 81978671 81979307 -70557952 - Lx2 LINE L1 -16 6981 6307 6 1210 661 265 33 11 chr5 81979341 81979524 -70557735 + B3 SINE B2 28 214 -2 6 1210 393 22 0 0 chr5 81980882 81980928 -70556331 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1210 269 313 122 88 chr5 81980928 81981075 -70556184 - RSINE1 SINE B4 -5 160 9 6 1210 401 353 43 13 chr5 81981413 81981648 -70555611 - MIR SINE MIR -3 259 18 6 1210 270 0 0 0 chr5 81982407 81982437 -70554822 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 6 1210 1157 288 57 39 chr5 81982586 81983205 -70554054 + L1MB8 LINE L1 5532 6161 -17 6 1210 486 160 33 7 chr5 81983207 81983358 -70553901 + (TA)n Simple_repeat Simple_repeat 1 155 0 6 1210 447 250 68 8 chr5 81983770 81983887 -70553372 - MER34A LTR ERV1 -428 143 20 6 1210 186 103 0 0 chr5 81984066 81984095 -70553164 + (C)n Simple_repeat Simple_repeat 1 29 0 6 1210 846 56 0 0 chr5 81984439 81984547 -70552712 + (TC)n Simple_repeat Simple_repeat 1 108 0 6 1210 243 0 0 0 chr5 81984547 81984573 -70552686 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1210 3403 157 62 12 chr5 81984638 81985297 -70551962 - RLTR17 LTR ERVK 0 692 1 6 1210 222 37 0 0 chr5 81985621 81985648 -70551611 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 6 1210 27 62 0 0 chr5 81986815 81986863 -70550396 + AT_rich Low_complexity Low_complexity 1 48 0 6 1210 626 284 90 6 chr5 81986885 81987062 -70550197 - B3 SINE B2 -24 192 1 6 1210 29 0 0 0 chr5 81988762 81988791 -70548468 + AT_rich Low_complexity Low_complexity 1 29 0 6 1210 324 299 207 0 chr5 81989269 81989356 -70547903 + ID_B1 SINE B4 97 201 -23 6 1210 828 118 0 0 chr5 81989356 81989483 -70547776 + (GGAA)n Simple_repeat Simple_repeat 2 128 0 6 1210 515 252 43 68 chr5 81989691 81989853 -70547406 - RSINE1 SINE B4 -5 160 3 6 1210 317 277 126 11 chr5 81989878 81989973 -70547286 - LFSINE_Vert SINE SINE -69 390 285 6 1210 28 0 0 0 chr5 81990730 81990758 -70546501 + AT_rich Low_complexity Low_complexity 1 28 0 6 1210 612 262 12 47 chr5 81991729 81991901 -70545358 + MLT1A1 LTR MaLR 243 408 0 6 1210 269 333 0 12 chr5 81992390 81992475 -70544784 - MLT1H2 LTR MaLR -338 151 68 6 1210 24 32 0 0 chr5 81993026 81993057 -70544202 + AT_rich Low_complexity Low_complexity 1 31 0 6 1210 373 218 22 22 chr5 81993057 81993146 -70544113 + Lx9 LINE L1 7193 7281 -363 6 1210 617 324 17 55 chr5 81993361 81993599 -70543660 + B4A SINE B4 64 292 0 6 1210 333 0 0 0 chr5 81994248 81994285 -70542974 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1210 466 279 36 14 chr5 81995184 81995322 -70541937 + B3 SINE B2 1 141 -75 6 1210 203 88 0 29 chr5 81996059 81996094 -70541165 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1210 513 135 0 0 chr5 81996246 81996335 -70540924 + (CA)n Simple_repeat Simple_repeat 1 89 0 6 1210 827 249 40 0 chr5 81997035 81997236 -70540023 + B3 SINE B2 2 210 -6 6 1210 284 48 24 0 chr5 81998582 81998624 -70538635 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1210 405 138 0 0 chr5 81998626 81998706 -70538553 + (CAGAGA)n Simple_repeat Simple_repeat 2 81 0 6 1210 240 143 0 0 chr5 81999415 81999457 -70537802 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 6 1210 1553 187 28 90 chr5 81999510 81999909 -70537350 - ORR1D1 LTR MaLR 0 374 1 6 1210 324 0 0 0 chr5 82000159 82000195 -70537064 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1210 39252 8 1 6 chr5 82000654 82006857 -70530402 - L1Md_A LINE L1 0 6582 413 2 1210 387 310 25 19 chr5 82008304 82008465 -70528794 - L2 LINE L2 -500 2919 2758 3 1210 207 0 0 0 chr5 82009954 82009977 -70527282 + (CCAA)n Simple_repeat Simple_repeat 1 23 0 4 1210 201 244 0 0 chr5 82009977 82010022 -70527237 + GA-rich Low_complexity Low_complexity 3 47 0 5 1210 501 47 0 0 chr5 82010449 82010513 -70526746 + (TCC)n Simple_repeat Simple_repeat 1 64 0 6 1210 463 260 195 0 chr5 82011264 82011433 -70525826 + B3 SINE B2 5 206 -10 7 1210 183 139 0 0 chr5 82013584 82013620 -70523639 + (CAAT)n Simple_repeat Simple_repeat 3 38 0 8 1210 567 0 0 0 chr5 82013874 82013937 -70523322 + (TC)n Simple_repeat Simple_repeat 1 63 0 9 1210 520 321 0 0 chr5 82014171 82014305 -70522954 + ID_B1 SINE B4 82 215 -9 1 1210 27 0 0 0 chr5 82015151 82015178 -70522081 + AT_rich Low_complexity Low_complexity 1 27 0 1 1210 190 293 73 42 chr5 82015382 82015478 -70521781 - L3 LINE CR1 -1177 3312 3214 1 1210 425 316 89 57 chr5 82015538 82015696 -70521563 + RSINE1 SINE B4 3 165 0 1 1210 342 0 0 0 chr5 82015818 82015856 -70521403 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1210 1838 161 64 61 chr5 82015937 82016314 -70520945 + ORR1C1 LTR MaLR 1 378 0 1 1210 1670 186 36 36 chr5 82016636 82016999 -70520260 - RMER6B LTR ERVK -2 459 97 1 1210 234 242 0 0 chr5 82017031 82017097 -70520162 + CT-rich Low_complexity Low_complexity 5 70 0 1 1210 263 49 24 0 chr5 82017740 82017781 -70519478 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 1 1210 1215 275 52 10 chr5 82018215 82018523 -70518736 - ORR1D2 LTR MaLR -8 362 42 1 1210 243 0 0 0 chr5 82018548 82018575 -70518684 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2 1210 1267 7 0 0 chr5 82018577 82018718 -70518541 - B1_Mus2 SINE Alu -6 141 1 2 1210 391 300 35 35 chr5 82018751 82018865 -70518394 + PB1D10 SINE Alu 4 117 0 2 1210 189 0 0 0 chr5 82019096 82019117 -70518142 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1210 931 148 321 32 chr5 82020162 82020357 -70516902 - RMER10B LTR ERVL -1 397 154 2 1210 333 0 0 0 chr5 82020357 82020394 -70516865 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 1210 931 148 321 32 chr5 82020394 82020506 -70516753 - RMER10B LTR ERVL -245 153 1 2 1210 364 299 112 0 chr5 82020550 82020657 -70516602 + PB1D9 SINE Alu 1 119 -1 2 1210 369 0 0 0 chr5 82020858 82020899 -70516360 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1210 248 176 13 39 chr5 82020913 82020990 -70516269 + T-rich Low_complexity Low_complexity 3 77 0 2 1210 189 0 0 0 chr5 82021736 82021757 -70515502 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1210 260 290 0 0 chr5 82022000 82022062 -70515197 + CT-rich Low_complexity Low_complexity 2 63 0 3 1210 1097 96 0 0 chr5 82022134 82022280 -70514979 + B1_Mus2 SINE Alu 2 147 0 3 1210 1254 180 42 30 chr5 82022299 82022618 -70514641 - RMER17C LTR ERVK -14 396 1 3 1210 504 192 37 46 chr5 82024560 82024669 -70512590 - B1_Mus2 SINE Alu -19 128 21 3 1210 972 247 116 62 chr5 82024694 82025201 -70512058 - RMER17C LTR ERVK -520 438 2 3 1210 454 266 65 0 chr5 82025201 82025256 -70512003 - B3A SINE B2 -135 63 1 3 1210 30 45 0 0 chr5 82025731 82025775 -70511484 + AT_rich Low_complexity Low_complexity 1 44 0 3 1210 24 0 0 0 chr5 82025927 82025951 -70511308 + AT_rich Low_complexity Low_complexity 1 24 0 3 1210 464 294 75 52 chr5 82026288 82026500 -70510759 - MLT1C LTR MaLR -225 242 26 3 1210 225 0 0 0 chr5 82026549 82026574 -70510685 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1210 447 19 0 0 chr5 82027376 82027428 -70509831 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1210 389 239 22 0 chr5 82027562 82027654 -70509605 - PB1D10 SINE Alu -9 108 15 4 1210 450 94 0 0 chr5 82028770 82028834 -70508425 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 1210 21 0 0 0 chr5 82029995 82030016 -70507243 + AT_rich Low_complexity Low_complexity 1 21 0 4 1210 826 251 14 9 chr5 82030148 82030361 -70506898 - ID_B1 SINE B4 -10 214 1 4 1210 514 233 17 0 chr5 82031307 82031423 -70505836 - PB1D7 SINE Alu -2 118 1 4 1210 1180 53 12 6 chr5 82031673 82031844 -70505415 - L1_Mus4 LINE L1 0 6636 6465 4 1210 1177 122 226 46 chr5 82031921 82032204 -70505055 - ORR1B1 LTR MaLR -20 374 41 4 1210 456 62 0 0 chr5 82032306 82032370 -70504889 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1210 247 351 101 36 chr5 82032477 82032616 -70504643 - MER21B LTR ERV1 -202 661 514 4 1210 273 376 28 28 chr5 82032763 82032908 -70504351 - MER21B LTR ERV1 -621 242 98 4 1210 233 39 58 19 chr5 82033015 82033067 -70504192 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1210 1266 291 64 10 chr5 82033646 82034035 -70503224 - MTD LTR MaLR -9 410 1 5 1210 1343 271 13 140 chr5 82034102 82034573 -70502686 + MTD LTR MaLR 1 411 -8 5 1210 543 289 39 65 chr5 82034747 82035084 -70502175 + L1MD3 LINE L1 6728 7055 -940 5 1210 444 343 77 49 chr5 82035292 82035657 -70501602 + L1MD3 LINE L1 7371 7745 -40 5 1210 1331 205 23 37 chr5 82035969 82036268 -70500991 - MTC LTR MaLR -24 397 103 5 1210 297 0 0 0 chr5 82036318 82036351 -70500908 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 5 1210 890 132 0 33 chr5 82036392 82036573 -70500686 + G-rich Low_complexity Low_complexity 4 178 0 5 1210 493 315 64 18 chr5 82037001 82037221 -70500038 - MER58B DNA MER1_type 0 341 112 5 1210 366 355 97 0 chr5 82037233 82037355 -70499904 - ID_B1 SINE B4 -4 220 87 5 1210 908 286 93 60 chr5 82037355 82037561 -70499698 + MTD LTR MaLR 1 206 -213 5 1210 288 0 0 0 chr5 82037561 82037593 -70499666 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 1210 908 286 93 60 chr5 82037593 82037772 -70499487 + MTD LTR MaLR 207 398 -21 5 1210 284 335 78 56 chr5 82039586 82039766 -70497493 - MIR SINE MIR -20 242 59 6 1210 709 302 14 10 chr5 82039912 82040119 -70497140 + MER2 DNA MER2_type 138 345 0 6 1210 245 289 21 117 chr5 82040228 82040294 -70496965 + ID SINE ID 7 72 -152 6 1210 351 0 0 0 chr5 82040294 82040333 -70496926 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1210 245 289 21 117 chr5 82040333 82040360 -70496899 + ID_B1 SINE B4 73 91 -133 6 1210 234 0 0 0 chr5 82041450 82041476 -70495783 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1210 228 329 26 0 chr5 82041611 82041687 -70495572 + MER5A DNA MER1_type 21 98 -91 6 1210 279 133 0 0 chr5 82042168 82042213 -70495046 + (A)n Simple_repeat Simple_repeat 1 45 0 6 1210 222 361 0 12 chr5 82042606 82042690 -70494569 + ID4_ SINE ID 1 83 0 6 1210 226 167 49 16 chr5 82042770 82042831 -70494428 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 6 1210 320 263 46 83 chr5 82042831 82042939 -70494320 - PB1D9 SINE Alu 0 120 17 7 1210 662 158 0 125 chr5 82043003 82043155 -70494104 - B1_Mur3 SINE Alu 0 149 17 7 1210 709 279 19 83 chr5 82045982 82046076 -70491183 + ORR1E LTR MaLR 10 102 -257 7 1210 2052 118 11 72 chr5 82046076 82046423 -70490836 - ORR1A3 LTR MaLR 0 326 1 7 1210 709 279 19 83 chr5 82046423 82046594 -70490665 + ORR1E LTR MaLR 103 258 -101 7 1210 519 180 0 0 chr5 82046856 82046967 -70490292 + (TG)n Simple_repeat Simple_repeat 1 111 0 7 1210 269 310 131 69 chr5 82046967 82047241 -70490018 - B4 SINE B4 0 292 2 7 1210 21 0 0 0 chr5 82048920 82048941 -70488318 + AT_rich Low_complexity Low_complexity 1 21 0 7 1210 1419 189 108 5 chr5 82049447 82049626 -70487633 - RMER17C LTR ERVK 0 410 206 7 1210 468 0 0 0 chr5 82049626 82049678 -70487581 + (GA)n Simple_repeat Simple_repeat 1 52 0 7 1210 1419 189 108 5 chr5 82049678 82049870 -70487389 - RMER17C LTR ERVK -205 205 2 7 1210 484 252 37 79 chr5 82050902 82051066 -70486193 + MER20 DNA MER1_type 63 219 0 7 1211 295 320 144 55 chr5 82051199 82051470 -70485789 - MLT1E1 LTR MaLR -38 616 322 8 1211 540 306 63 30 chr5 82053008 82053281 -70483978 + L1MD2 LINE L1 5850 6131 -228 8 1211 234 352 68 54 chr5 82053343 82053622 -70483637 - MLT1E1 LTR MaLR -21 353 71 8 1211 2263 137 45 3 chr5 82053724 82054148 -70483111 - L1_Mur2 LINE L1 -993 5340 4868 8 1211 2927 61 200 9 chr5 82054653 82055083 -70482176 - RLTR1B LTR ERV1 0 512 1 8 1211 61615 18 0 0 chr5 82055083 82062637 -70474622 - MMERGLN-int LTR ERV1 0 7556 1 8 1211 2927 61 200 9 chr5 82062637 82063067 -70474192 - RLTR1B LTR ERV1 0 512 1 8 1211 736 219 40 30 chr5 82063307 82063509 -70473750 - ORR1C2 LTR MaLR -6 378 175 8 1211 610 304 40 17 chr5 82063483 82063730 -70473529 - ORR1C2 LTR MaLR -109 261 1 8 1211 252 257 28 28 chr5 82063900 82063972 -70473287 - ID4_ SINE ID -10 73 2 8 1211 355 312 88 79 chr5 82065041 82065359 -70471900 - ORR1D1 LTR MaLR -26 353 1 8 1211 824 124 7 0 chr5 82066481 82066618 -70470641 + (GA)n Simple_repeat Simple_repeat 1 138 0 8 1211 387 60 0 0 chr5 82066926 82066976 -70470283 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1211 449 300 25 104 chr5 82067316 82067673 -70469586 + Lx8 LINE L1 6859 7187 -286 8 1211 246 323 52 0 chr5 82069898 82069994 -70467265 - PB1D9 SINE Alu -5 115 15 9 1211 26 0 0 0 chr5 82070106 82070132 -70467127 + AT_rich Low_complexity Low_complexity 1 26 0 9 1211 270 0 43 43 chr5 82070749 82070796 -70466463 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 9 1211 1725 109 103 29 chr5 82071167 82071478 -70465781 - Lx LINE L1 0 6654 6321 9 1211 235 345 130 39 chr5 82071750 82071958 -70465301 - L2c LINE L2 -205 3182 2956 9 1211 269 0 0 53 chr5 82072145 82072183 -70465076 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 9 1211 285 100 0 0 chr5 82072892 82072942 -70464317 + (A)n Simple_repeat Simple_repeat 1 50 0 9 1211 1127 55 7 7 chr5 82073976 82074124 -70463135 + B1_Mus1 SINE Alu 1 148 0 9 1211 379 217 17 9 chr5 82074205 82074321 -70462938 - Lx9 LINE L1 -7 7637 7521 9 1211 229 198 58 11 chr5 82074397 82074484 -70462775 + (TA)n Simple_repeat Simple_repeat 1 91 0 9 1211 788 48 9 0 chr5 82074587 82074692 -70462567 + (CA)n Simple_repeat Simple_repeat 2 107 0 1 1211 222 93 73 18 chr5 82076434 82076489 -70460770 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1211 24 32 0 0 chr5 82077875 82077906 -70459353 + AT_rich Low_complexity Low_complexity 1 31 0 1 1211 528 59 0 0 chr5 82078439 82078507 -70458752 + (TA)n Simple_repeat Simple_repeat 2 69 0 1 1211 726 96 0 0 chr5 82079479 82079583 -70457676 + (TTCC)n Simple_repeat Simple_repeat 4 107 0 1 1211 771 32 0 0 chr5 82079824 82079918 -70457341 + (TATG)n Simple_repeat Simple_repeat 3 96 0 1 1211 309 275 12 12 chr5 82080055 82080136 -70457123 - MLT1A0 LTR MaLR -73 292 212 1 1211 272 176 77 66 chr5 82080154 82080245 -70457014 - MLT1A0 LTR MaLR -217 148 57 1 1211 209 253 146 52 chr5 82080326 82080422 -70456837 + MIRc SINE MIR 44 148 -120 1 1211 21 0 0 0 chr5 82080793 82080814 -70456445 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 220 231 25 37 chr5 82080924 82081005 -70456254 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 1 1211 755 307 65 91 chr5 82081706 82082225 -70455034 - MT2A LTR ERVL 0 533 28 1 1211 22 0 0 0 chr5 82082441 82082463 -70454796 + AT_rich Low_complexity Low_complexity 1 22 0 1 1211 192 77 0 0 chr5 82082646 82082672 -70454587 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 1 1211 218 354 53 9 chr5 82084417 82084531 -70452728 + PB1D7 SINE Alu 2 120 0 1 1211 646 216 29 7 chr5 82085089 82085229 -70452030 - B1_Mus2 SINE Alu -1 146 4 1 1211 32 26 0 0 chr5 82085284 82085323 -70451936 + AT_rich Low_complexity Low_complexity 1 39 0 1 1211 242 167 37 0 chr5 82085335 82085389 -70451870 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 1 1211 461 284 161 93 chr5 82085630 82085941 -70451318 - ORR1D2 LTR MaLR -11 359 28 1 1211 275 323 10 10 chr5 82086206 82086303 -70450956 - PB1D7 SINE Alu -21 99 3 1 1211 21 57 0 0 chr5 82086591 82086626 -70450633 + AT_rich Low_complexity Low_complexity 1 35 0 1 1211 216 236 14 14 chr5 82086751 82086824 -70450435 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1211 266 239 35 9 chr5 82086881 82086995 -70450264 + (TA)n Simple_repeat Simple_repeat 2 118 0 1 1211 484 274 26 18 chr5 82087908 82088135 -70449124 - Lx9 LINE L1 -9 7635 7407 1 1211 21 0 0 0 chr5 82089707 82089728 -70447531 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 246 128 0 0 chr5 82090393 82090432 -70446827 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1211 228 200 0 0 chr5 82090678 82090748 -70446511 + T-rich Low_complexity Low_complexity 1 70 0 1 1211 540 0 0 0 chr5 82093051 82093111 -70444148 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 1 1211 692 201 7 22 chr5 82093114 82093251 -70444008 - B1_Mur3 SINE Alu -13 136 2 1 1211 194 128 0 25 chr5 82093256 82093296 -70443963 + T-rich Low_complexity Low_complexity 2 40 0 1 1211 1462 28 68 0 chr5 82095312 82095489 -70441770 - B2_Mm1a SINE B2 -3 190 2 1 1211 1750 136 78 56 chr5 82095797 82096156 -70441103 - ORR1B2 LTR MaLR 0 367 1 1 1211 276 354 76 42 chr5 82096458 82096576 -70440683 + PB1 SINE Alu 1 122 -5 1 1211 685 259 106 0 chr5 82096891 82097080 -70440179 + B3 SINE B2 2 210 -6 1 1211 232 287 64 35 chr5 82097269 82097410 -70439849 - MIRb SINE MIR -58 210 66 1 1211 401 36 18 0 chr5 82097579 82097634 -70439625 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1211 265 286 0 0 chr5 82097634 82097697 -70439562 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1211 187 346 0 0 chr5 82098665 82098717 -70438542 - L2 LINE L2 -861 2558 2507 1 1211 477 312 31 26 chr5 82099609 82099800 -70437459 - B3A SINE B2 -4 194 3 1 1211 21 0 0 0 chr5 82101146 82101167 -70436092 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 249 331 21 63 chr5 82102070 82102212 -70435047 - RMER12 LTR ERVK -437 885 750 1 1211 230 0 33 0 chr5 82102550 82102580 -70434679 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1211 400 298 129 12 chr5 82103383 82103638 -70433621 - Lx8 LINE L1 -2 7471 7187 1 1211 265 355 113 5 chr5 82103638 82103850 -70433409 + Lx8 LINE L1 6954 7188 -285 1 1211 247 280 13 0 chr5 82104517 82104592 -70432667 + L2c LINE L2 1923 1998 -1421 1 1211 221 239 0 0 chr5 82104830 82104876 -70432383 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1211 316 375 68 34 chr5 82104967 82105318 -70431941 + L2c LINE L2 2138 2500 -919 1 1211 394 167 12 49 chr5 82105424 82105506 -70431753 - ID_B1 SINE B4 0 224 146 1 1211 258 207 0 0 chr5 82106596 82106654 -70430605 + T-rich Low_complexity Low_complexity 1 58 0 1 1211 315 333 55 18 chr5 82106791 82106956 -70430303 + MIR SINE MIR 40 210 -52 1 1211 354 298 52 23 chr5 82107242 82107414 -70429845 + L2c LINE L2 3207 3383 -4 1 1211 4438 108 3 2 chr5 82108444 82109072 -70428187 - Lx2A1 LINE L1 -2 7006 6378 1 1211 291 266 225 0 chr5 82109188 82109339 -70427920 - B3 SINE B2 -7 209 25 1 1211 324 0 0 0 chr5 82109560 82109596 -70427663 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 1 1211 2195 161 56 21 chr5 82109926 82110356 -70426903 - RLTR11B LTR ERVK -8 445 1 1 1211 2129 111 19 66 chr5 82110425 82110802 -70426457 - RLTR15 LTR ERVK 0 359 1 1 1211 379 346 22 0 chr5 82111418 82111554 -70425705 + MLT1A0 LTR MaLR 225 363 -2 1 1211 710 188 51 0 chr5 82112383 82112521 -70424738 + B1_Mus1 SINE Alu 4 148 0 1 1211 590 210 58 0 chr5 82113663 82113801 -70423458 + B1_Mus1 SINE Alu 2 147 -1 1 1211 468 0 0 0 chr5 82114231 82114283 -70422976 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1211 2504 256 26 13 chr5 82114805 82115562 -70421697 - L1M3 LINE L1 -1894 4246 3480 1 1211 221 0 0 33 chr5 82118829 82118859 -70418400 + (TAA)n Simple_repeat Simple_repeat 1 29 0 1 1211 1739 238 62 114 chr5 82119462 82120112 -70417147 - Lx7 LINE L1 -1 7695 7080 1 1211 266 256 11 43 chr5 82120157 82120251 -70417008 + Lx7 LINE L1 6996 7086 -610 1 1211 435 52 0 0 chr5 82120803 82120861 -70416398 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1211 182 261 21 21 chr5 82120973 82121020 -70416239 - L4 LINE RTE -1519 510 464 1 1211 314 337 78 0 chr5 82121429 82121595 -70415664 - L1ME3 LINE L1 -222 5940 5762 1 1211 289 291 29 0 chr5 82121714 82121817 -70415442 - L1MD LINE L1 -2395 5600 5495 1 1211 386 380 73 9 chr5 82122024 82122400 -70414859 - L1ME3 LINE L1 -921 5225 4823 1 1211 28 29 0 0 chr5 82122783 82122818 -70414441 + AT_rich Low_complexity Low_complexity 1 35 0 1 1211 21 0 0 0 chr5 82122970 82122991 -70414268 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 35 95 0 0 chr5 82124546 82124651 -70412608 + AT_rich Low_complexity Low_complexity 1 105 0 1 1211 22 0 0 0 chr5 82124983 82125005 -70412254 + AT_rich Low_complexity Low_complexity 1 22 0 1 1211 21 0 0 0 chr5 82126232 82126253 -70411006 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 483 100 0 0 chr5 82126970 82127040 -70410219 + (GGGA)n Simple_repeat Simple_repeat 4 73 0 1 1211 222 62 0 0 chr5 82127220 82127252 -70410007 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 1 1211 4528 200 66 35 chr5 82127556 82129131 -70408128 - Lx2B LINE L1 -4 6996 5345 1 1211 230 329 145 40 chr5 82129315 82129543 -70407716 + L2 LINE L2 2101 2352 -1067 1 1211 807 292 35 11 chr5 82129579 82129839 -70407420 - Tigger5 DNA MER2_type 0 2406 2141 1 1211 527 289 33 0 chr5 82129844 82129996 -70407263 - Tigger5 DNA MER2_type -2092 314 158 1 1211 181 377 53 12 chr5 82130324 82130493 -70406766 + L2 LINE L2 2661 2836 -583 1 1211 37926 30 0 0 chr5 82130958 82137378 -70399881 - L1Md_T LINE L1 0 6585 69 1 1211 646 243 27 0 chr5 82137440 82137588 -70399671 - Lx8 LINE L1 -963 6510 6359 1 1211 1947 130 3 10 chr5 82138265 82138575 -70398684 - RLTR10E LTR ERVK -3 308 1 1 1211 22 0 0 0 chr5 82138598 82138620 -70398639 + AT_rich Low_complexity Low_complexity 1 22 0 1 1211 279 254 12 53 chr5 82139196 82139293 -70397966 - B4 SINE B4 -170 122 33 1 1211 351 45 14 69 chr5 82139681 82139753 -70397506 + (TTTTTG)n Simple_repeat Simple_repeat 5 72 0 1 1211 1052 67 0 0 chr5 82139753 82139888 -70397371 - B1_Mm SINE Alu 0 147 13 1 1211 8105 36 5 0 chr5 82140029 82140993 -70396266 - L1Md_F3 LINE L1 -2 6582 5614 1 1211 22 0 0 0 chr5 82141383 82141405 -70395854 + AT_rich Low_complexity Low_complexity 1 22 0 1 1211 25 0 0 0 chr5 82143906 82143931 -70393328 + AT_rich Low_complexity Low_complexity 1 25 0 1 1211 531 330 16 16 chr5 82144340 82144531 -70392728 - Lx7 LINE L1 -389 7307 7117 1 1211 203 54 26 51 chr5 82144771 82144810 -70392449 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1211 21 0 0 0 chr5 82145438 82145459 -70391800 + AT_rich Low_complexity Low_complexity 1 21 0 1 1211 416 280 72 0 chr5 82148579 82148704 -70388555 + Tigger5 DNA MER2_type 3 136 -2270 1 1211 1115 101 0 6 chr5 82148717 82148886 -70388373 + (TTTCC)n Simple_repeat Simple_repeat 3 170 0 1 1211 632 228 6 0 chr5 82148926 82149097 -70388162 + CT-rich Low_complexity Low_complexity 2 173 0 1 1211 416 67 17 0 chr5 82149630 82149690 -70387569 + (TCC)n Simple_repeat Simple_repeat 3 63 0 1 1211 856 266 10 24 chr5 82149698 82149906 -70387353 - B3 SINE B2 -11 205 1 1 1211 483 18 0 0 chr5 82150088 82150144 -70387115 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1211 627 178 0 0 chr5 82150146 82150320 -70386939 + GA-rich Low_complexity Low_complexity 2 175 0 1 1211 23 33 0 0 chr5 82150465 82150495 -70386764 + AT_rich Low_complexity Low_complexity 1 30 0 1 1211 546 331 25 19 chr5 82151688 82151848 -70385411 + B3A SINE B2 7 167 -31 1 1211 190 0 32 32 chr5 82152010 82152041 -70385218 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1211 907 90 96 7 chr5 82152041 82152176 -70385083 - B1_Mus1 SINE Alu -1 147 1 1 1211 918 289 105 81 chr5 82153532 82153708 -70383551 - L1MC1 LINE L1 -60 6273 6071 1 1211 243 0 0 0 chr5 82153708 82153735 -70383524 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1211 918 289 105 81 chr5 82153735 82154284 -70382975 - L1MC1 LINE L1 -263 6070 5532 1 1211 252 22 43 22 chr5 82155064 82155110 -70382149 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1211 270 219 27 14 chr5 82155171 82155245 -70382014 + CT-rich Low_complexity Low_complexity 4 78 0 2 1211 253 200 119 48 chr5 82156444 82156528 -70380731 + MT2B LTR ERVL 168 257 -344 2 1211 572 182 0 18 chr5 82156454 82156566 -70380693 + B1_Mus2 SINE Alu 31 140 -7 2 1211 454 309 21 25 chr5 82156619 82156805 -70380454 + B3 SINE B2 1 194 -1 2 1211 396 40 0 0 chr5 82157480 82157530 -70379729 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1211 484 217 95 6 chr5 82158413 82158571 -70378688 - L1MB8 LINE L1 -5 6173 6002 2 1211 302 234 51 13 chr5 82159393 82159471 -70377788 - ID4_ SINE ID 0 83 3 2 1211 756 214 9 9 chr5 82159729 82159926 -70377333 + B3 SINE B2 2 198 0 2 1211 337 283 93 9 chr5 82162166 82162273 -70374986 + PB1 SINE Alu 2 117 -10 2 1211 432 273 133 11 chr5 82162292 82162555 -70374704 + L1MB8 LINE L1 5647 5941 -237 2 1211 22 0 0 0 chr5 82162672 82162694 -70374565 + AT_rich Low_complexity Low_complexity 1 22 0 2 1211 449 246 131 44 chr5 82163298 82163481 -70373778 - Lx5 LINE L1 -1343 6117 5919 2 1211 221 57 29 0 chr5 82164919 82164954 -70372305 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1211 255 103 0 0 chr5 82164954 82164992 -70372267 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1211 366 23 0 0 chr5 82164994 82165037 -70372222 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1211 21 0 0 0 chr5 82165461 82165482 -70371777 + AT_rich Low_complexity Low_complexity 1 21 0 2 1211 539 149 0 9 chr5 82166632 82166740 -70370519 + (TA)n Simple_repeat Simple_repeat 1 107 0 2 1211 35 0 0 0 chr5 82166765 82166800 -70370459 + AT_rich Low_complexity Low_complexity 1 35 0 2 1211 200 86 0 28 chr5 82166871 82166907 -70370352 + (TCC)n Simple_repeat Simple_repeat 1 35 0 2 1211 237 65 0 0 chr5 82168511 82168542 -70368717 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2 1211 892 167 172 0 chr5 82169076 82169268 -70367991 + URR1B DNA MER1_type 1 225 0 2 1211 469 283 27 33 chr5 82169479 82169629 -70367630 + B1F2 SINE Alu 1 149 0 2 1211 34 24 0 0 chr5 82171258 82171299 -70365960 + AT_rich Low_complexity Low_complexity 1 41 0 2 1211 21 71 0 0 chr5 82171847 82171889 -70365370 + AT_rich Low_complexity Low_complexity 1 42 0 2 1211 1423 123 92 28 chr5 82172465 82172716 -70364543 + Lx3A LINE L1 6712 6978 -3 2 1211 232 155 33 49 chr5 82173560 82173621 -70363638 - L1M5 LINE L1 -3968 2178 2119 2 1211 207 0 0 0 chr5 82173841 82173864 -70363395 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1211 21 0 0 0 chr5 82174431 82174452 -70362807 + AT_rich Low_complexity Low_complexity 1 21 0 2 1211 30 27 0 0 chr5 82174594 82174631 -70362628 + AT_rich Low_complexity Low_complexity 1 37 0 2 1211 342 0 0 0 chr5 82176030 82176068 -70361191 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1211 282 29 0 0 chr5 82176068 82176102 -70361157 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1211 186 174 0 0 chr5 82176102 82176148 -70361111 + CT-rich Low_complexity Low_complexity 2 47 0 2 1211 477 204 0 0 chr5 82176149 82176237 -70361022 - B1F2 SINE Alu -9 140 53 2 1211 663 13 0 0 chr5 82176237 82176313 -70360946 + (GGAAA)n Simple_repeat Simple_repeat 1 76 0 2 1211 238 111 31 31 chr5 82176317 82176382 -70360877 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 2 1211 642 126 0 0 chr5 82176378 82176481 -70360778 + (GGA)n Simple_repeat Simple_repeat 2 104 0 2 1211 778 217 62 11 chr5 82176481 82176658 -70360601 - ORR1D1 LTR MaLR -188 186 1 2 1211 211 300 12 0 chr5 82179220 82179300 -70357959 + (TA)n Simple_repeat Simple_repeat 2 82 0 2 1211 617 142 0 29 chr5 82179354 82179456 -70357803 - B1_Mur4 SINE Alu -45 105 7 2 1211 21 82 0 0 chr5 82179842 82179891 -70357368 + AT_rich Low_complexity Low_complexity 1 49 0 2 1211 569 188 89 0 chr5 82180613 82180725 -70356534 - B3 SINE B2 -94 122 1 2 151 6658 107 48 2 chr5 82182057 82183378 -70353881 + L1_Mus4 LINE L1 5255 6636 0 2 1212 4179 29 6 0 chr5 82184189 82184679 -70352580 + L1Md_T LINE L1 6090 6582 0 2 1212 22 35 0 0 chr5 82184684 82184713 -70352546 + AT_rich Low_complexity Low_complexity 1 29 0 2 1212 279 71 0 0 chr5 82185207 82185249 -70352010 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 2 1212 1139 70 0 0 chr5 82185256 82185398 -70351861 - B1_Mus1 SINE Alu -6 142 1 2 1212 423 324 50 17 chr5 82185732 82185911 -70351348 + MER3 DNA MER1_type 1 185 -24 2 1212 22 35 0 0 chr5 82188307 82188336 -70348923 + AT_rich Low_complexity Low_complexity 1 29 0 2 1212 548 213 56 21 chr5 82188998 82189142 -70348117 + B1_Mur3 SINE Alu 1 149 0 2 1212 408 302 132 66 chr5 82190821 82191094 -70346165 - MLT1J1 LTR MaLR -149 295 5 2 1212 25 0 0 0 chr5 82191489 82191514 -70345745 + AT_rich Low_complexity Low_complexity 1 25 0 2 1212 411 279 116 74 chr5 82191957 82192289 -70344970 - MLT1A LTR MaLR 0 365 1 2 1212 22 0 0 0 chr5 82192353 82192375 -70344884 + AT_rich Low_complexity Low_complexity 1 22 0 2 1212 955 286 37 48 chr5 82193733 82194108 -70343151 - MTEb LTR MaLR 0 379 9 2 1212 636 165 0 0 chr5 82194450 82194553 -70342706 + B1_Mus1 SINE Alu 3 105 -43 2 1212 607 289 11 21 chr5 82195431 82195622 -70341637 + Lx8 LINE L1 7151 7339 -134 2 1212 678 275 109 0 chr5 82195963 82196156 -70341103 + B3 SINE B2 1 214 -2 2 1212 312 204 226 2 chr5 82197713 82197840 -70339419 + MIR SINE MIR 119 268 0 2 1212 270 0 0 0 chr5 82198016 82198046 -70339213 + (CCA)n Simple_repeat Simple_repeat 3 32 0 2 1212 584 246 162 0 chr5 82198065 82198244 -70339015 + B3 SINE B2 3 210 -6 2 1212 261 303 22 0 chr5 82199657 82199746 -70337513 + (CATA)n Simple_repeat Simple_repeat 1 91 0 2 1212 312 191 0 0 chr5 82201365 82201454 -70335805 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 1212 664 61 20 0 chr5 82201454 82201552 -70335707 + (GA)n Simple_repeat Simple_repeat 1 100 0 2 1212 667 306 60 35 chr5 82202984 82203302 -70333957 - Lx8 LINE L1 -1 7472 7147 2 1212 519 250 0 16 chr5 82203934 82204117 -70333142 + CT-rich Low_complexity Low_complexity 1 180 0 2 1212 21 36 0 0 chr5 82204808 82204836 -70332423 + AT_rich Low_complexity Low_complexity 1 28 0 2 1212 183 42 0 0 chr5 82208296 82208320 -70328939 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1212 621 293 103 20 chr5 82210791 82210986 -70326273 + B3 SINE B2 6 216 0 2 1212 216 0 0 0 chr5 82211757 82211781 -70325478 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1212 238 152 17 17 chr5 82212811 82212871 -70324388 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1212 337 214 29 0 chr5 82213018 82213121 -70324138 - Lx9 LINE L1 -42 7602 7497 2 1212 380 299 59 39 chr5 82213179 82213332 -70323927 - B4A SINE B4 -73 219 64 2 1212 1024 323 100 43 chr5 82214311 82215321 -70321938 - L1MD2 LINE L1 -16 6343 5276 2 1212 23 78 0 0 chr5 82215865 82215916 -70321343 + AT_rich Low_complexity Low_complexity 1 51 0 2 1212 817 107 14 14 chr5 82217369 82217511 -70319748 - L1Md_F2 LINE L1 0 6582 6441 2 1212 228 321 119 48 chr5 82218163 82218415 -70318844 - L3 LINE CR1 -263 4226 3957 2 1212 189 0 0 0 chr5 82218423 82218444 -70318815 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1212 22 35 0 0 chr5 82220750 82220779 -70316480 + AT_rich Low_complexity Low_complexity 1 29 0 2 1212 213 65 0 0 chr5 82220817 82220848 -70316411 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1212 27 0 0 0 chr5 82223007 82223034 -70314225 + AT_rich Low_complexity Low_complexity 1 27 0 2 1212 318 26 0 0 chr5 82223199 82223238 -70314021 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1212 253 290 0 14 chr5 82224905 82224975 -70312284 + CT-rich Low_complexity Low_complexity 4 72 0 2 1212 25 0 0 0 chr5 82224990 82225015 -70312244 + AT_rich Low_complexity Low_complexity 1 25 0 2 1212 37 23 0 0 chr5 82225057 82225101 -70312158 + AT_rich Low_complexity Low_complexity 1 44 0 2 1212 22 0 0 0 chr5 82225538 82225560 -70311699 + AT_rich Low_complexity Low_complexity 1 22 0 2 1212 525 16 0 0 chr5 82225780 82225842 -70311417 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1212 23 0 0 0 chr5 82227956 82227979 -70309280 + AT_rich Low_complexity Low_complexity 1 23 0 2 1212 195 42 0 0 chr5 82230644 82230668 -70306591 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1212 366 249 0 19 chr5 82233151 82233311 -70303948 + (TA)n Simple_repeat Simple_repeat 2 158 0 2 1212 597 339 64 4 chr5 82233350 82233599 -70303660 + MER2 DNA MER2_type 20 283 -62 2 1212 21 0 0 0 chr5 82234182 82234203 -70303056 + AT_rich Low_complexity Low_complexity 1 21 0 2 1212 1350 75 0 0 chr5 82235102 82235720 -70301539 + (CA)n Simple_repeat Simple_repeat 1 618 0 2 1212 814 193 15 0 chr5 82236420 82236555 -70300704 + B1_Mur4 SINE Alu 5 141 -9 2 1212 221 0 35 0 chr5 82236555 82236584 -70300675 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1212 450 0 0 0 chr5 82237497 82237547 -70299712 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1212 2908 184 31 31 chr5 82237741 82238319 -70298940 - Lx5 LINE L1 0 7050 6473 2 1212 373 391 46 46 chr5 82239134 82239394 -70297865 + MIR SINE MIR 1 262 -6 2 1212 242 366 0 0 chr5 82240367 82240460 -70296799 + (CA)n Simple_repeat Simple_repeat 1 93 0 2 1212 544 214 9 9 chr5 82240818 82240931 -70296328 - Lx9 LINE L1 -275 7369 7257 2 1212 25 0 0 0 chr5 82241909 82241934 -70295325 + AT_rich Low_complexity Low_complexity 1 25 0 2 1212 432 0 0 0 chr5 82241994 82242042 -70295217 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 3 1212 845 113 0 6 chr5 82242188 82242348 -70294911 + (GA)n Simple_repeat Simple_repeat 2 160 0 3 1212 1038 276 165 27 chr5 82242484 82243005 -70294254 - Tigger7 DNA MER2_type -1501 990 398 3 1212 544 165 0 17 chr5 82243007 82243124 -70294135 + CT-rich Low_complexity Low_complexity 1 115 0 3 1212 761 310 186 14 chr5 82243145 82243495 -70293764 - Tigger7 DNA MER2_type -2081 410 1 3 1212 219 195 0 0 chr5 82243520 82243561 -70293698 + B1F SINE Alu 97 137 -12 3 1212 752 224 196 0 chr5 82243765 82243944 -70293315 - B3 SINE B2 0 216 3 3 1212 183 100 0 0 chr5 82247313 82247343 -70289916 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1212 7603 25 1 0 chr5 82247456 82248342 -70288917 - L1Md_A LINE L1 0 6582 5696 3 1212 287 298 194 36 chr5 82248371 82248618 -70288641 - MLT1F2 LTR MaLR 0 560 275 3 1212 548 321 88 58 chr5 82249152 82249413 -70287846 + B4 SINE B4 2 270 -22 3 1212 441 0 0 0 chr5 82249431 82249480 -70287779 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1212 375 98 0 0 chr5 82249480 82249540 -70287719 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1212 1073 73 0 0 chr5 82249607 82249743 -70287516 + B1_Mus2 SINE Alu 1 136 -11 3 1212 789 11 0 0 chr5 82249745 82249835 -70287424 + (GAA)n Simple_repeat Simple_repeat 2 91 0 3 1212 328 214 21 43 chr5 82250585 82250604 -70286655 + ID_B1 SINE B4 134 223 0 3 1212 526 68 14 0 chr5 82250604 82250677 -70286582 + B1_Mm SINE Alu 74 147 0 3 1212 305 66 10 99 chr5 82250861 82250962 -70286297 + (TTTA)n Simple_repeat Simple_repeat 1 92 0 3 1212 60 27 0 0 chr5 82250962 82251036 -70286223 + AT_rich Low_complexity Low_complexity 1 74 0 3 1212 405 245 0 20 chr5 82251067 82251165 -70286094 + PB1 SINE Alu 28 118 -2 3 1212 227 308 93 0 chr5 82251471 82251578 -70285681 - L1ME3B LINE L1 -66 6174 6058 3 1212 4596 160 25 24 chr5 82252141 82252974 -70284285 - Lx4A LINE L1 -2 7056 6223 3 1212 3184 107 48 7 chr5 82252974 82253513 -70283746 + L1_Mur2 LINE L1 2910 3470 -2407 3 1212 399 41 0 0 chr5 82253651 82253700 -70283559 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1212 412 392 37 4 chr5 82253929 82254170 -70283089 + Arthur1 DNA Tip100 360 608 -3339 3 1212 552 324 94 14 chr5 82254217 82254493 -70282766 - Lx8 LINE L1 -28 7445 7148 3 1212 249 159 0 0 chr5 82254769 82254813 -70282446 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1212 329 314 135 35 chr5 82254929 82255418 -70281841 + Arthur1 DNA Tip100 3401 3938 -9 3 1212 182 254 0 192 chr5 82256272 82256345 -70280914 + L3 LINE CR1 716 774 -3715 3 1212 748 71 18 0 chr5 82257042 82257154 -70280105 + (GA)n Simple_repeat Simple_repeat 1 114 0 3 1212 527 385 45 15 chr5 82257211 82257475 -70279784 - B4A SINE B4 -20 272 1 3 1212 208 64 62 21 chr5 82262160 82262208 -70275051 + (TAA)n Simple_repeat Simple_repeat 3 52 0 3 1212 494 269 83 12 chr5 82262513 82262682 -70274577 - MER2 DNA MER2_type -66 279 99 3 1212 485 338 76 21 chr5 82263744 82263980 -70273279 - MLT1D LTR MaLR -2 503 255 3 1212 351 0 0 0 chr5 82264692 82264731 -70272528 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1212 4133 171 182 11 chr5 82264847 82265725 -70271534 + RLTR25B LTR ERVK 1 1028 0 3 1212 190 226 45 61 chr5 82266514 82266580 -70270679 + L3 LINE CR1 2510 2574 -1915 3 1212 1001 126 0 8 chr5 82267426 82267675 -70269584 + (TTTC)n Simple_repeat Simple_repeat 1 246 0 3 1212 1025 124 12 0 chr5 82267675 82267844 -70269415 + (TTCC)n Simple_repeat Simple_repeat 2 172 0 3 1212 673 61 20 0 chr5 82268533 82268632 -70268627 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 3 1212 2552 141 58 7 chr5 82269058 82269493 -70267766 + RLTR31_Mm LTR ERVK 1 457 -104 3 1212 236 403 46 15 chr5 82269735 82269747 -70267512 + B1F2 SINE Alu 12 144 -3 3 1212 390 339 0 17 chr5 82269747 82269864 -70267395 + ID_B1 SINE B4 105 219 -5 3 1212 300 253 75 32 chr5 82270051 82270145 -70267114 - MER77 LTR ERVL -7 600 503 3 1212 363 44 0 0 chr5 82270613 82270658 -70266601 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 1212 514 43 0 0 chr5 82270688 82270757 -70266502 + Lx2 LINE L1 6928 6996 -1 3 1212 306 0 0 0 chr5 82270757 82270791 -70266468 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 3 1212 367 280 7 101 chr5 82271446 82271585 -70265674 + MTE2b LTR MaLR 58 183 -196 3 1212 280 262 40 45 chr5 82271570 82271770 -70265489 - RMER17D LTR ERVK -471 418 220 3 1212 873 252 40 0 chr5 82271699 82271901 -70265358 + MTE2b LTR MaLR 169 378 -1 3 1212 304 281 30 13 chr5 82271930 82272048 -70265211 + L1MA9 LINE L1 5602 5719 -452 3 1212 330 26 0 0 chr5 82272063 82272102 -70265157 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1212 288 0 0 0 chr5 82272105 82272137 -70265122 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 1212 335 321 97 16 chr5 82272178 82272448 -70264811 + L1MA9 LINE L1 5818 6108 -81 3 1212 217 300 0 20 chr5 82272459 82272510 -70264749 + B4A SINE B4 97 146 -146 3 1212 24 53 0 0 chr5 82273886 82273924 -70263335 + AT_rich Low_complexity Low_complexity 1 38 0 3 1212 21 0 0 0 chr5 82275027 82275048 -70262211 + AT_rich Low_complexity Low_complexity 1 21 0 3 1212 222 228 18 0 chr5 82275146 82275203 -70262056 + A-rich Low_complexity Low_complexity 3 60 0 3 1212 949 307 68 30 chr5 82275222 82275622 -70261637 - Lx7 LINE L1 -334 7362 6948 3 1212 299 356 110 46 chr5 82276540 82276692 -70260567 + Arthur1 DNA Tip100 2 172 -3775 3 1212 6528 51 10 1 chr5 82276692 82277493 -70259766 + RLTR13C2 LTR ERVK 1 808 0 3 1212 299 356 110 46 chr5 82277493 82277558 -70259701 + Arthur1 DNA Tip100 173 233 -3714 3 1212 263 370 8 23 chr5 82277705 82277835 -70259424 + Arthur1 DNA Tip100 842 969 -2978 3 1212 3563 57 8 41 chr5 82277853 82278345 -70258914 + L1_Mus2 LINE L1 6091 6566 0 3 1212 23 0 0 0 chr5 82279941 82279964 -70257295 + AT_rich Low_complexity Low_complexity 1 23 0 3 1212 195 42 0 0 chr5 82280392 82280416 -70256843 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1212 180 0 0 0 chr5 82280431 82280451 -70256808 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1212 791 313 45 61 chr5 82280478 82280810 -70256449 - MTE2a LTR MaLR -53 366 37 3 1212 6838 86 33 21 chr5 82281510 82282481 -70254778 - RLTR13C1 LTR ERVK 0 983 1 3 1212 371 272 41 58 chr5 82282563 82282617 -70254642 + Lx6 LINE L1 7284 7341 -119 3 1212 210 71 0 0 chr5 82282617 82282645 -70254614 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1212 371 272 41 58 chr5 82282645 82282762 -70254497 + Lx6 LINE L1 7342 7451 -9 3 1212 30600 85 32 10 chr5 82282769 82287814 -70249445 + L1Md_F2 LINE L1 217 5585 -298 3 1212 7757 62 2 8 chr5 82287815 82287863 -70249396 + L1Md_F2 LINE L1 5587 5633 -949 3 1212 3022 37 167 2 chr5 82287863 82288271 -70248988 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1212 7757 62 2 8 chr5 82288271 82289221 -70248038 + L1Md_F2 LINE L1 5634 6579 -3 3 1212 8621 98 35 3 chr5 82289304 82290433 -70246826 + Lx3_Mus LINE L1 4968 6135 -874 3 1212 2224 105 24 3 chr5 82290433 82290812 -70246447 + L1_Mus3 LINE L1 6284 6638 0 3 1212 8621 104 74 12 chr5 82290812 82291638 -70245621 + Lx3_Mus LINE L1 6136 7003 -6 3 1212 1693 191 36 42 chr5 82291727 82292087 -70245172 + ORR1B2 LTR MaLR 2 359 -8 3 1212 309 187 0 0 chr5 82292277 82292352 -70244907 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 1212 38 39 0 0 chr5 82292795 82292847 -70244412 + AT_rich Low_complexity Low_complexity 1 52 0 3 1212 1590 168 64 6 chr5 82293267 82293578 -70243681 - ORR1A4 LTR MaLR 0 329 1 3 1212 583 177 40 54 chr5 82294043 82294192 -70243067 - Lx6 LINE L1 0 7460 7314 3 1212 2324 204 43 9 chr5 82294203 82294668 -70242591 - Lx5 LINE L1 -215 6835 6355 3 1212 1009 255 70 65 chr5 82294668 82295080 -70242179 + RMER13B LTR ERVK 317 730 -178 3 1212 441 200 70 0 chr5 82295098 82295213 -70242046 + Lx5 LINE L1 6922 7044 -6 3 1212 1799 237 32 5 chr5 82295225 82295599 -70241660 - Lx6 LINE L1 -136 7324 6941 3 1212 23 0 0 0 chr5 82297011 82297034 -70240225 + AT_rich Low_complexity Low_complexity 1 23 0 3 1212 568 243 44 78 chr5 82297045 82297250 -70240009 - B3A SINE B2 0 198 1 3 1212 22 0 0 0 chr5 82297766 82297788 -70239471 + AT_rich Low_complexity Low_complexity 1 22 0 3 1212 1164 314 59 3 chr5 82299542 82299896 -70237363 + MTE2b LTR MaLR 1 374 -5 3 1212 4325 201 28 8 chr5 82299969 82300801 -70236458 + Lx5 LINE L1 6196 7043 -7 3 1212 1078 95 0 7 chr5 82300992 82301141 -70236118 - B1_Mus1 SINE Alu 0 148 1 3 1212 235 336 46 18 chr5 82301141 82301250 -70236009 - Arthur1A DNA Tip100 -45 132 21 3 1212 23725 75 12 0 chr5 82301390 82304609 -70232650 + L1Md_F2 LINE L1 2328 5585 -298 3 1212 7611 68 3 4 chr5 82304610 82305607 -70231652 + L1Md_F2 LINE L1 5587 6582 0 3 1212 256 42 0 77 chr5 82306173 82306225 -70231034 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 3 1212 281 156 0 0 chr5 82306284 82306329 -70230930 + RMER6A LTR ERVK 1 45 -675 3 1212 438 177 186 10 chr5 82306395 82306492 -70230767 + RMER19B LTR ERVK 316 429 -473 3 1212 355 287 18 39 chr5 82306505 82306649 -70230610 + RMER19B LTR ERVK 545 630 -272 3 1212 6063 36 1 4 chr5 82306649 82307381 -70229878 + L1Md_F3 LINE L1 5853 6582 -2 3 1212 3194 159 57 8 chr5 82307403 82308005 -70229254 + RMER6A LTR ERVK 126 756 0 3 1212 294 290 12 14 chr5 82308369 82308474 -70228785 - B1F SINE Alu 0 149 50 3 1212 633 27 0 0 chr5 82308786 82308861 -70228398 + (TTCC)n Simple_repeat Simple_repeat 1 75 0 3 1212 1205 181 54 102 chr5 82310120 82310452 -70226807 - ORR1B2 LTR MaLR -51 316 1 3 1212 198 0 0 0 chr5 82310617 82310639 -70226620 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1212 1339 310 86 25 chr5 82311458 82312063 -70225196 + Lx8 LINE L1 6609 7250 -223 3 1213 462 312 0 14 chr5 82314004 82314147 -70223112 + B1F1 SINE Alu 1 141 -8 3 1213 565 321 11 11 chr5 82314672 82314858 -70222401 + MER82 DNA MER2_type 17 202 -451 3 1213 446 278 111 93 chr5 82314986 82315212 -70222047 - MER82 DNA MER2_type -164 489 260 3 1213 620 59 0 12 chr5 82315256 82315342 -70221917 + (TCTA)n Simple_repeat Simple_repeat 3 87 0 3 1213 231 348 0 0 chr5 82315344 82315413 -70221846 - ID4 SINE ID -10 73 5 3 1213 262 340 19 0 chr5 82315486 82315592 -70221667 + MER82 DNA MER2_type 546 653 0 3 1213 270 167 0 0 chr5 82317322 82317382 -70219877 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1213 1561 233 231 12 chr5 82317569 82318072 -70219187 + RMER20B LTR ERVK 1 613 -14 4 1213 1648 99 12 87 chr5 82318253 82318575 -70218684 - RLTR10A LTR ERVK 0 411 114 4 1213 387 0 0 0 chr5 82318587 82318630 -70218629 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1213 646 328 67 26 chr5 82318662 82318975 -70218284 - Lx9 LINE L1 -451 7193 6868 4 1213 495 282 70 48 chr5 82318974 82319287 -70217972 + Lx9 LINE L1 7305 7624 -20 4 1213 22 0 0 0 chr5 82319583 82319605 -70217654 + AT_rich Low_complexity Low_complexity 1 22 0 4 1213 435 178 174 22 chr5 82320045 82320137 -70217122 + B3A SINE B2 2 107 -91 4 1213 303 157 77 19 chr5 82320367 82320471 -70216788 + (TA)n Simple_repeat Simple_repeat 2 111 0 4 1213 25 0 0 0 chr5 82322477 82322502 -70214757 + AT_rich Low_complexity Low_complexity 1 25 0 4 1213 304 375 0 26 chr5 82323576 82323691 -70213568 - Tigger5 DNA MER2_type -4 2402 2291 4 1213 437 379 54 9 chr5 82323687 82323908 -70213351 - Tigger5 DNA MER2_type -2164 242 12 4 1213 288 77 0 0 chr5 82323930 82323969 -70213290 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1213 187 29 56 28 chr5 82325288 82325324 -70211935 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 4 1213 370 314 0 29 chr5 82325809 82325914 -70211345 + RSINE1 SINE B4 3 104 -61 4 1213 2386 100 121 25 chr5 82326328 82326768 -70210491 - RLTR45 LTR ERVK 0 482 1 4 1213 270 0 0 0 chr5 82327213 82327243 -70210016 + (CATA)n Simple_repeat Simple_repeat 1 30 0 4 1213 21 36 0 0 chr5 82327555 82327583 -70209676 + AT_rich Low_complexity Low_complexity 1 28 0 4 1213 525 275 7 27 chr5 82327639 82327785 -70209474 - B3A SINE B2 -4 194 52 4 1213 1157 88 0 0 chr5 82328068 82328228 -70209031 - B2_Mm2 SINE B2 -34 161 2 4 1213 5022 90 73 30 chr5 82328661 82329440 -70207819 - Lx LINE L1 -7 6647 5835 4 1213 27 0 0 0 chr5 82330018 82330045 -70207214 + AT_rich Low_complexity Low_complexity 1 27 0 4 1213 323 318 43 57 chr5 82330896 82331036 -70206223 - ID_B1 SINE B4 -7 217 80 4 1213 224 282 81 23 chr5 82331188 82331275 -70205984 + PB1 SINE Alu 36 127 0 4 1213 29 0 0 0 chr5 82331893 82331922 -70205337 + AT_rich Low_complexity Low_complexity 1 29 0 4 1213 232 323 20 20 chr5 82331986 82332084 -70205175 - MTEa LTR MaLR -3 418 321 4 1213 360 0 0 0 chr5 82332180 82332220 -70205039 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1213 680 161 0 11 chr5 82332220 82332402 -70204857 + GA-rich Low_complexity Low_complexity 1 180 0 4 1213 261 173 36 29 chr5 82332417 82332554 -70204705 + (CAGAGA)n Simple_repeat Simple_repeat 2 139 0 4 1213 237 265 0 0 chr5 82332556 82332605 -70204654 + polypurine Low_complexity Low_complexity 4 52 0 4 1213 249 352 102 34 chr5 82332630 82332777 -70204482 - MTEa LTR MaLR -201 178 22 4 1213 3182 19 0 0 chr5 82333564 82333928 -70203331 - L1Md_A LINE L1 -403 6179 5816 4 1213 3208 11 0 0 chr5 82333928 82334292 -70202967 + L1Md_A LINE L1 6219 6582 0 4 1213 469 318 75 5 chr5 82335020 82335219 -70202040 + RMER15 LTR ERVL 363 575 0 4 1213 808 335 21 21 chr5 82335374 82335655 -70201604 + B4A SINE B4 12 292 0 4 1213 219 268 0 27 chr5 82335670 82335743 -70201516 + (CATA)n Simple_repeat Simple_repeat 1 71 0 4 1213 5834 66 0 1 chr5 82336091 82336838 -70200421 + L1Md_F2 LINE L1 5825 6570 -12 4 1213 25 31 0 0 chr5 82337668 82337700 -70199559 + AT_rich Low_complexity Low_complexity 1 32 0 4 1213 736 300 96 30 chr5 82337753 82338024 -70199235 - B4A SINE B4 -2 290 2 4 1213 572 320 71 20 chr5 82338320 82338572 -70198687 - Charlie1b DNA MER1_type -236 287 23 4 1213 333 0 0 0 chr5 82339440 82339477 -70197782 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1213 617 180 10 0 chr5 82339891 82339991 -70197268 - B1_Mur4 SINE Alu -13 137 37 4 1213 397 278 53 12 chr5 82340296 82340467 -70196792 - Kanga1 DNA Tc2 -9 1736 1559 4 1213 374 322 90 65 chr5 82340572 82340851 -70196408 - B4 SINE B4 -2 290 5 4 1213 36 40 0 0 chr5 82340969 82341019 -70196240 + AT_rich Low_complexity Low_complexity 1 50 0 4 1213 1179 75 0 0 chr5 82341095 82341242 -70196017 + B1_Mus1 SINE Alu 2 148 0 4 1213 207 0 0 0 chr5 82341247 82341270 -70195989 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1213 291 85 0 0 chr5 82341289 82341336 -70195923 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1213 569 335 26 6 chr5 82341347 82341503 -70195756 - B3A SINE B2 -38 160 2 4 1213 306 0 0 0 chr5 82342673 82342707 -70194552 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1213 724 308 57 8 chr5 82342712 82342974 -70194285 - B4 SINE B4 -16 276 2 4 1213 1310 270 80 35 chr5 82343092 82343193 -70194066 - Lx8 LINE L1 -138 7335 7232 4 1213 270 0 0 0 chr5 82343193 82343223 -70194036 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 4 1213 1310 270 80 35 chr5 82343223 82343547 -70193712 - Lx8 LINE L1 -242 7231 6892 4 1213 294 50 0 0 chr5 82343919 82343959 -70193300 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1213 218 105 26 0 chr5 82344175 82344213 -70193046 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 4 1213 251 250 18 0 chr5 82344217 82344273 -70192986 - ID4_ SINE ID -25 58 2 4 1213 227 54 27 0 chr5 82344281 82344318 -70192941 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 4 1213 592 164 25 29 chr5 82344902 82345025 -70192234 + B1_Mur3 SINE Alu 8 139 -10 4 1213 515 0 46 0 chr5 82345025 82345090 -70192169 + (CAAAC)n Simple_repeat Simple_repeat 1 68 0 4 1213 423 0 0 0 chr5 82347207 82347254 -70190005 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1213 4168 73 29 7 chr5 82347984 82348532 -70188727 - LTRIS2 LTR ERV1 0 564 5 4 1213 428 0 19 0 chr5 82348534 82348586 -70188673 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1213 25 90 0 0 chr5 82350520 82350587 -70186672 + AT_rich Low_complexity Low_complexity 1 67 0 4 1213 225 0 0 0 chr5 82350727 82350752 -70186507 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1213 586 303 235 49 chr5 82350824 82351232 -70186027 + RMER5 LTR ERV1 49 532 -2 4 1213 27 62 0 0 chr5 82351861 82351909 -70185350 + AT_rich Low_complexity Low_complexity 1 48 0 4 1213 290 308 47 0 chr5 82352010 82352117 -70185142 - PB1D10 SINE Alu -5 112 1 4 1213 1046 103 0 7 chr5 82352422 82352569 -70184690 - B1_Mus1 SINE Alu -2 146 1 4 1213 374 38 0 19 chr5 82352792 82352845 -70184414 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1213 1708 101 0 22 chr5 82354753 82355026 -70182233 - L1_Mus4 LINE L1 -4 6632 6366 4 1213 12186 146 26 9 chr5 82355026 82356659 -70180600 - L1_Mus4 LINE L1 -685 5951 4252 4 1213 180 0 0 0 chr5 82356659 82356679 -70180580 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1213 12186 168 33 12 chr5 82356679 82357540 -70179719 - L1_Mus4 LINE L1 -1632 4251 3407 4 1213 3379 177 84 16 chr5 82357537 82358248 -70179011 - L1VL4 LINE L1 -5317 985 226 4 1213 32 67 0 0 chr5 82362742 82362802 -70174457 + AT_rich Low_complexity Low_complexity 1 60 0 4 1213 1561 256 74 17 chr5 82363034 82363451 -70173808 - Lx6 LINE L1 -156 7304 6864 4 1213 709 226 7 0 chr5 82363691 82363828 -70173431 - B1_Mur1 SINE Alu -1 148 11 4 1213 3949 54 0 0 chr5 82364245 82364888 -70172371 - L1_Mus1 LINE L1 -504 6063 5421 4 1213 1390 77 0 0 chr5 82364888 82365071 -70172188 + L1_Mus1 LINE L1 6383 6565 -2 4 1213 438 288 171 32 chr5 82365563 82365721 -70171538 - B3A SINE B2 -36 180 1 4 1213 237 283 68 126 chr5 82365721 82365905 -70171354 - LTR85c LTR Gypsy? -207 616 445 4 1213 429 20 0 0 chr5 82365991 82366041 -70171218 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1213 1864 251 39 46 chr5 82366148 82366450 -70170809 - RLTR17 LTR ERVK -73 619 309 4 1213 4560 46 0 3 chr5 82366450 82367014 -70170245 - L1Md_F3 LINE L1 0 6584 6023 4 1213 1864 251 39 46 chr5 82367014 82367230 -70170029 - RLTR17 LTR ERVK -384 308 105 4 1213 270 81 0 0 chr5 82367284 82367321 -70169938 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 4 1213 306 244 40 24 chr5 82367324 82367435 -70169824 - MTD LTR MaLR -58 361 242 4 1213 261 0 0 0 chr5 82368690 82368719 -70168540 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 4 1213 411 21 0 0 chr5 82368784 82368832 -70168427 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1213 501 360 31 36 chr5 82368887 82369112 -70168147 - B4A SINE B4 -60 232 9 4 1213 378 57 0 0 chr5 82370778 82370831 -70166428 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 4 1213 5729 75 31 0 chr5 82370866 82371630 -70165629 - L1_Mus1 LINE L1 0 6567 5780 4 1213 933 156 0 0 chr5 82371651 82371818 -70165441 + CT-rich Low_complexity Low_complexity 3 169 0 4 1213 182 105 26 0 chr5 82372114 82372152 -70165107 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1213 234 150 0 0 chr5 82372273 82372313 -70164946 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1213 677 278 54 42 chr5 82373890 82374130 -70163129 - MER2 DNA MER2_type -3 342 100 4 1213 224 245 0 0 chr5 82374130 82374183 -70163076 + T-rich Low_complexity Low_complexity 1 53 0 4 1213 838 262 39 5 chr5 82374197 82374404 -70162855 - B3 SINE B2 0 216 3 4 1213 300 287 33 64 chr5 82374432 82374540 -70162719 - PB1D7 SINE Alu -9 111 7 4 1213 1278 317 35 8 chr5 82374632 82375144 -70162115 - Lx8 LINE L1 -263 7210 6685 4 1213 510 255 0 19 chr5 82375144 82375248 -70162011 - RLTR20A LTR ERVK 0 541 440 4 1213 315 0 0 0 chr5 82375276 82375311 -70161948 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1213 1666 156 102 0 chr5 82375335 82375649 -70161610 - RMER6C LTR ERVK -344 346 1 4 1213 916 318 30 7 chr5 82375649 82375944 -70161315 + Lx8 LINE L1 6389 6690 -783 4 1213 1598 227 41 15 chr5 82375975 82376119 -70161140 + RLTR20A LTR ERVK 31 179 -362 4 1213 1098 23 0 0 chr5 82376119 82376252 -70161007 + (GA)n Simple_repeat Simple_repeat 2 134 0 4 1213 1598 227 41 15 chr5 82376252 82376501 -70160758 + RLTR20A LTR ERVK 180 433 -108 4 1213 387 0 0 0 chr5 82376525 82376568 -70160691 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1213 1282 184 25 1 chr5 82376570 82376850 -70160409 + RMER6C LTR ERVK 345 690 0 4 1213 180 0 0 0 chr5 82377011 82377031 -70160228 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1213 433 172 110 17 chr5 82377037 82377155 -70160104 + Lx7 LINE L1 5674 5802 -1894 5 1213 1336 133 298 12 chr5 82377316 82377473 -70159786 - RMER17C LTR ERVK 0 410 181 5 1213 982 20 25 25 chr5 82377473 82377630 -70159629 + (GAGAA)n Simple_repeat Simple_repeat 2 158 0 5 1213 1336 133 298 12 chr5 82377630 82377791 -70159468 - RMER17C LTR ERVK -230 180 1 5 1213 191 302 38 0 chr5 82378005 82378058 -70159201 + L2a LINE L2 2749 2803 -616 5 1213 288 340 118 68 chr5 82378428 82378590 -70158669 + L2a LINE L2 3182 3402 -24 5 1213 355 51 37 37 chr5 82379591 82379672 -70157587 + (CAAA)n Simple_repeat Simple_repeat 4 84 0 5 1213 21 0 0 0 chr5 82379837 82379858 -70157401 + AT_rich Low_complexity Low_complexity 1 21 0 5 1213 1102 225 16 16 chr5 82380072 82380329 -70156930 + ORR1D1 LTR MaLR 1 257 -117 5 1213 716 74 157 0 chr5 82380824 82380932 -70156327 - B1_Mus2 SINE Alu -21 126 2 5 1213 596 267 7 20 chr5 82382167 82382316 -70154943 + B1_Mur2 SINE Alu 1 147 -2 5 1213 261 348 40 73 chr5 82383431 82383555 -70153704 - MTEa LTR MaLR -220 159 40 5 1213 758 262 53 5 chr5 82383717 82383905 -70153354 + B3 SINE B2 20 216 0 5 1213 301 355 123 19 chr5 82384065 82384220 -70153039 - B4A SINE B4 -5 287 117 5 1213 2258 91 0 59 chr5 82384257 82384596 -70152663 - ORR1A2 LTR MaLR -8 319 1 5 1213 231 361 24 24 chr5 82384944 82385029 -70152230 + PB1D10 SINE Alu 21 105 -12 5 1213 225 178 0 0 chr5 82385044 82385089 -70152170 + GA-rich Low_complexity Low_complexity 3 47 0 5 1213 3709 233 145 24 chr5 82385496 82385635 -70151624 - Lx9 LINE L1 -6 7638 7482 5 1213 547 96 21 21 chr5 82385635 82385731 -70151528 + (TATG)n Simple_repeat Simple_repeat 4 99 0 5 1213 1811 201 47 3 chr5 82385731 82386096 -70151163 + ORR1C2 LTR MaLR 4 384 0 5 1213 273 57 0 0 chr5 82386097 82386132 -70151127 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1213 642 79 0 0 chr5 82386132 82386220 -70151039 + (TA)n Simple_repeat Simple_repeat 2 90 0 5 1213 3709 233 145 24 chr5 82386220 82387268 -70149991 - Lx9 LINE L1 -163 7481 6304 5 1213 1067 248 64 39 chr5 82387504 82387625 -70149634 - Lx9 LINE L1 -1690 5954 5799 5 1213 582 15 0 0 chr5 82387625 82387692 -70149567 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1213 1067 220 62 42 chr5 82387692 82387950 -70149309 - Lx9 LINE L1 -49 5798 5534 5 1213 400 203 0 0 chr5 82388010 82388074 -70149185 + B4 SINE B4 7 70 -222 5 1213 26 30 0 0 chr5 82388373 82388406 -70148853 + AT_rich Low_complexity Low_complexity 1 33 0 5 1213 277 75 0 36 chr5 82389198 82389253 -70148006 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 5 1213 988 106 0 0 chr5 82389257 82389399 -70147860 + B1_Mus1 SINE Alu 7 148 0 5 1213 239 71 24 0 chr5 82389400 82389442 -70147817 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 5 1213 1610 204 75 11 chr5 82389857 82390218 -70147041 + ORR1C2 LTR MaLR 1 384 0 5 1213 344 317 24 24 chr5 82390311 82390434 -70146825 + MLT1F2 LTR MaLR 1 123 -437 5 1213 1253 205 60 32 chr5 82390964 82391246 -70146013 - ORR1C2 LTR MaLR 0 384 95 5 1213 26 30 0 0 chr5 82392210 82392243 -70145016 + AT_rich Low_complexity Low_complexity 1 33 0 5 1213 4052 79 2 2 chr5 82392423 82392968 -70144291 + L1_Mus2 LINE L1 6022 6566 0 5 1213 238 283 0 0 chr5 82393277 82393337 -70143922 + GA-rich Low_complexity Low_complexity 1 60 0 5 1213 1846 168 19 0 chr5 82393689 82394010 -70143249 - ORR1A4 LTR MaLR -2 327 1 5 1213 322 74 18 18 chr5 82395075 82395130 -70142129 + (CAGA)n Simple_repeat Simple_repeat 4 58 0 5 1213 23 0 0 0 chr5 82395567 82395590 -70141669 + AT_rich Low_complexity Low_complexity 1 23 0 5 1213 314 24 0 0 chr5 82395627 82395669 -70141590 - L1_Mus2 LINE L1 -6 6560 6519 5 1213 581 177 9 9 chr5 82395676 82395790 -70141469 - Lx4A LINE L1 -1061 5997 5884 5 1213 3696 188 19 35 chr5 82395791 82396634 -70140625 + Lx4B LINE L1 6178 7058 0 5 1213 205 161 0 0 chr5 82396635 82396666 -70140593 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1213 25 31 0 0 chr5 82396972 82397004 -70140255 + AT_rich Low_complexity Low_complexity 1 32 0 5 1213 572 289 45 10 chr5 82397004 82397203 -70140056 + Lx8 LINE L1 6662 6867 -606 5 1213 279 0 0 0 chr5 82398427 82398458 -70138801 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1213 549 0 0 0 chr5 82398458 82398518 -70138741 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1213 394 297 72 33 chr5 82398821 82398974 -70138285 - RSINE1 SINE B4 -6 159 1 5 1213 23 0 0 0 chr5 82401241 82401264 -70135995 + AT_rich Low_complexity Low_complexity 1 23 0 5 1213 430 304 81 73 chr5 82401365 82401613 -70135646 + LTR40a LTR ERVL 268 517 -2 5 1213 588 73 0 0 chr5 82401942 82402024 -70135235 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 1213 339 44 0 0 chr5 82402024 82402068 -70135191 + (CAGAGA)n Simple_repeat Simple_repeat 3 47 0 5 1213 405 0 0 0 chr5 82403529 82403574 -70133685 + (TTA)n Simple_repeat Simple_repeat 3 47 0 5 1213 211 232 232 0 chr5 82403678 82403760 -70133499 - B1F SINE Alu -1 148 48 5 1213 322 216 122 0 chr5 82403689 82403763 -70133496 - ID_B1 SINE B4 -16 208 126 5 1213 385 81 0 0 chr5 82404245 82404307 -70132952 + Lx LINE L1 6588 6649 -5 5 1213 21 71 0 0 chr5 82404446 82404488 -70132771 + AT_rich Low_complexity Low_complexity 1 42 0 5 1213 231 188 0 0 chr5 82404785 82404833 -70132426 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1213 349 331 225 36 chr5 82404841 82405170 -70132089 - MLT2B1 LTR ERVL -69 451 61 5 1213 552 342 25 0 chr5 82405182 82405384 -70131875 + MTE2a LTR MaLR 169 375 -4 5 1213 1782 301 81 15 chr5 82405392 82406062 -70131197 + MTE2a-int LTR MaLR 5 718 -862 5 1213 442 371 44 27 chr5 82406102 82406285 -70130974 - MTEa-int LTR MaLR -432 1148 963 5 1213 887 355 84 36 chr5 82406349 82406779 -70130480 - MTEa-int LTR MaLR -971 609 160 5 1213 3528 63 0 0 chr5 82406779 82407237 -70130022 - L1Md_F2 LINE L1 0 6582 6125 5 1213 887 355 84 36 chr5 82407237 82407387 -70129872 - MTEa-int LTR MaLR -1421 159 1 5 1213 900 288 46 79 chr5 82407387 82407779 -70129480 - MTEa LTR MaLR 0 379 1 5 1213 451 341 97 18 chr5 82409270 82409477 -70127782 - MLT1B LTR MaLR 0 390 166 5 1213 845 45 9 0 chr5 82409477 82409587 -70127672 + (TC)n Simple_repeat Simple_repeat 2 112 0 5 1213 451 341 97 18 chr5 82409587 82409657 -70127602 - MLT1B LTR MaLR -225 165 91 5 1213 522 46 0 0 chr5 82409923 82409988 -70127271 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1213 450 0 0 0 chr5 82411043 82411093 -70126166 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1213 491 325 55 10 chr5 82412919 82413121 -70124138 - B3 SINE B2 -5 211 1 5 1213 24 0 0 0 chr5 82413167 82413191 -70124068 + AT_rich Low_complexity Low_complexity 1 24 0 5 1213 1163 310 51 44 chr5 82414088 82414499 -70122760 - MTD LTR MaLR -5 414 1 5 1213 327 230 92 58 chr5 82415110 82415230 -70122029 + Lx4B LINE L1 6928 7051 -7 5 1213 282 330 86 9 chr5 82415993 82416109 -70121150 + PB1 SINE Alu 1 125 -2 5 1213 41 0 0 0 chr5 82416197 82416238 -70121021 + AT_rich Low_complexity Low_complexity 1 41 0 5 1213 3403 128 30 19 chr5 82416257 82416829 -70120430 - Lx3B LINE L1 0 6973 6396 5 1213 574 352 16 89 chr5 82416975 82417290 -70119969 + MLT1E3 LTR MaLR 300 591 -33 5 1213 500 221 292 6 chr5 82417587 82417755 -70119504 + B3 SINE B2 1 216 0 5 1213 597 293 71 70 chr5 82417834 82418590 -70118669 - L1MA5A LINE L1 -437 5860 5149 5 1213 2463 190 64 16 chr5 82418590 82419151 -70118108 + RMER6D LTR ERVK 129 716 -4 5 1213 24 0 0 0 chr5 82419184 82419208 -70118051 + AT_rich Low_complexity Low_complexity 1 24 0 5 1213 451 292 9 0 chr5 82419208 82419314 -70117945 - B3 SINE B2 -5 211 105 5 1213 618 255 7 7 chr5 82419314 82419452 -70117807 - Lx6 LINE L1 -344 7116 6979 5 1213 598 185 92 12 chr5 82419449 82419613 -70117646 - L1_Mur3 LINE L1 -6386 1326 1150 5 1213 277 324 45 50 chr5 82421701 82421922 -70115337 - MER31A LTR ERV1 -21 464 245 5 1213 252 0 0 0 chr5 82423040 82423068 -70114191 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1213 31338 90 8 10 chr5 82424290 82429284 -70107975 + L1Md_F2 LINE L1 608 5586 -297 5 1213 8176 46 1 0 chr5 82429284 82430279 -70106980 + L1Md_F2 LINE L1 5587 6582 0 5 1213 547 13 40 0 chr5 82430290 82430365 -70106894 + (CAAAC)n Simple_repeat Simple_repeat 2 79 0 5 1213 530 262 97 44 chr5 82430402 82430650 -70106609 + MER92B LTR ERV1 177 437 -199 5 1213 290 349 0 37 chr5 82430931 82431065 -70106194 + Lx8 LINE L1 7002 7130 -343 5 1213 564 174 0 0 chr5 82431236 82431357 -70105902 + (CA)n Simple_repeat Simple_repeat 2 122 0 5 1213 573 28 0 0 chr5 82432155 82432226 -70105033 + (TG)n Simple_repeat Simple_repeat 1 71 0 5 1213 442 335 90 17 chr5 82432902 82433136 -70104123 - Lx9 LINE L1 -222 7422 7172 5 1213 184 218 30 121 chr5 82434696 82434795 -70102464 - L4 LINE RTE -925 1104 1015 5 1213 873 217 0 0 chr5 82435828 82436068 -70101191 + GA-rich Low_complexity Low_complexity 1 240 0 5 1213 197 100 50 0 chr5 82436799 82436839 -70100420 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 5 1213 821 37 9 0 chr5 82436893 82437002 -70100257 + (GA)n Simple_repeat Simple_repeat 1 110 0 5 1213 27 29 0 0 chr5 82438615 82438649 -70098610 + AT_rich Low_complexity Low_complexity 1 34 0 5 1213 25 65 0 0 chr5 82438677 82438723 -70098536 + AT_rich Low_complexity Low_complexity 1 46 0 5 1213 511 265 94 14 chr5 82438751 82438889 -70098370 - B1_Mur1 SINE Alu 0 149 1 5 1213 227 300 29 0 chr5 82439015 82439085 -70098174 - RMER1A Other Other -45 985 914 5 1213 1707 198 45 6 chr5 82439083 82439418 -70097841 - RMER1B Other Other -134 932 585 5 1213 240 86 0 0 chr5 82439548 82439583 -70097676 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1213 384 241 9 27 chr5 82439896 82440007 -70097252 + L1VL2 LINE L1 85 193 -6142 5 1213 2825 211 60 80 chr5 82439999 82440875 -70096384 + L1Md_F LINE L1 332 1190 -5426 5 1213 937 101 3 1 chr5 82440880 82441041 -70096218 - L1_Mur3 LINE L1 -4214 1666 1503 5 1213 525 46 0 0 chr5 82441024 82441089 -70096170 - L1Md_F2 LINE L1 -841 5741 5677 6 1213 490 32 0 0 chr5 82441089 82441152 -70096107 - RLTR46 LTR ERVK 0 320 258 6 1213 2159 83 13 0 chr5 82441152 82441454 -70095805 + L1Md_F2 LINE L1 6273 6578 -4 6 1213 6045 104 15 35 chr5 82441460 82442448 -70094811 + L1Md_F LINE L1 2051 3018 -2865 5 151 20026 124 8 4 chr5 82442446 82445608 -70091651 + L1_Mus2 LINE L1 2490 5667 -216 6 1214 2771 55 0 3 chr5 82445608 82445955 -70091304 - ORR1A1 LTR MaLR 0 346 1 6 1214 20026 68 4 7 chr5 82445955 82446854 -70090405 + L1_Mus2 LINE L1 5668 6565 -1 6 1214 570 93 0 0 chr5 82447211 82447297 -70089962 + (TG)n Simple_repeat Simple_repeat 2 87 0 6 1214 413 293 44 15 chr5 82447326 82447461 -70089798 - B4A SINE B4 -149 143 5 6 1214 22 0 0 0 chr5 82447645 82447667 -70089592 + AT_rich Low_complexity Low_complexity 1 22 0 6 1214 1766 181 21 0 chr5 82447674 82448006 -70089253 + Lx LINE L1 6316 6654 0 6 1214 220 363 6 23 chr5 82448050 82448225 -70089034 + T-rich Low_complexity Low_complexity 4 175 0 6 1214 267 354 0 10 chr5 82448161 82448258 -70089001 + CT-rich Low_complexity Low_complexity 2 97 0 6 1214 479 302 163 5 chr5 82448624 82448820 -70088439 + MLT1D LTR MaLR 279 505 0 6 1214 411 335 66 21 chr5 82449613 82449910 -70087349 + L1ME3 LINE L1 5730 6036 -126 6 1214 202 114 68 0 chr5 82449915 82449959 -70087300 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1214 3650 72 0 55 chr5 82450038 82450564 -70086695 - L1_Mus2 LINE L1 0 6566 6070 6 1214 495 0 0 0 chr5 82450675 82450730 -70086529 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1214 846 194 200 0 chr5 82451887 82452067 -70085192 + B3 SINE B2 1 216 0 6 1214 920 270 0 5 chr5 82453361 82453573 -70083686 + B3 SINE B2 1 211 -5 6 1214 321 93 0 0 chr5 82454711 82454765 -70082494 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1214 222 179 0 0 chr5 82454764 82454820 -70082439 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1214 357 24 0 0 chr5 82455174 82455216 -70082043 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 6 1214 290 125 36 0 chr5 82456593 82456649 -70080610 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 6 1214 340 242 117 37 chr5 82456651 82456814 -70080445 - B2_Mm1t SINE B2 -17 176 1 6 1214 24 32 0 0 chr5 82457109 82457140 -70080119 + AT_rich Low_complexity Low_complexity 1 31 0 6 1214 1172 48 0 0 chr5 82457877 82458024 -70079235 + B1_Mus2 SINE Alu 1 147 0 6 1214 285 75 0 0 chr5 82458024 82458064 -70079195 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1214 456 273 102 88 chr5 82458226 82458347 -70078912 - B3 SINE B2 -5 211 83 6 1214 3795 78 4 2 chr5 82458347 82458848 -70078411 - L1_Mus3 LINE L1 -3 6635 6134 6 1214 456 273 102 88 chr5 82458848 82458931 -70078328 - B3 SINE B2 -134 82 4 6 1214 529 310 96 19 chr5 82459003 82459378 -70077881 + L1MD LINE L1 4848 5251 -895 6 1214 431 302 152 30 chr5 82459428 82459626 -70077633 - RMER12 LTR ERVK 0 1322 1101 6 1214 1161 129 9 65 chr5 82459821 82460036 -70077223 - RLTR22_Mur LTR ERVK -1043 805 603 6 1214 266 311 47 37 chr5 82461429 82461536 -70075723 - ORR1E LTR MaLR -232 127 20 6 1214 448 52 39 49 chr5 82462525 82462627 -70074632 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 6 1214 369 0 0 0 chr5 82462630 82462671 -70074588 + (TA)n Simple_repeat Simple_repeat 2 42 0 6 1214 770 239 145 60 chr5 82462672 82463037 -70074222 - MT2B LTR ERVL -54 547 3 6 1214 232 235 146 12 chr5 82463152 82463234 -70074025 - RMER15 LTR ERVL -76 499 407 6 1214 997 45 30 0 chr5 82464740 82464873 -70072386 - B1_Mus1 SINE Alu -5 143 7 6 1214 213 39 0 0 chr5 82464984 82465010 -70072249 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 6 1214 37925 30 0 0 chr5 82466132 82472383 -70064876 - L1Md_T LINE L1 0 6585 238 6 1214 410 255 142 47 chr5 82472527 82472675 -70064584 - MLT1K LTR MaLR -22 573 412 6 1214 191 386 93 20 chr5 82475652 82475898 -70061361 - L2 LINE L2 -1883 1536 1273 6 1214 544 270 0 39 chr5 82476554 82476695 -70060564 + B1_Mur1 SINE Alu 1 136 -13 6 1214 261 0 0 0 chr5 82476695 82476724 -70060535 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 6 1214 544 270 0 39 chr5 82476724 82476736 -70060523 + B1_Mur1 SINE Alu 137 148 -1 6 1214 400 166 29 7 chr5 82477066 82477206 -70060053 + (TATG)n Simple_repeat Simple_repeat 2 144 0 6 1214 461 107 0 56 chr5 82478431 82478520 -70058739 - Lx LINE L1 -3 6651 6568 6 1214 2545 147 2 21 chr5 82478520 82478994 -70058265 + L1_Mur2 LINE L1 3565 4029 -1848 6 1214 632 301 59 50 chr5 82479004 82479326 -70057933 - Lx8 LINE L1 -181 7292 6968 6 1214 23 54 0 0 chr5 82479361 82479398 -70057861 + AT_rich Low_complexity Low_complexity 1 37 0 6 1214 23 0 0 0 chr5 82479533 82479556 -70057703 + AT_rich Low_complexity Low_complexity 1 23 0 6 1214 1113 76 0 7 chr5 82479614 82479748 -70057511 + B1_Mm SINE Alu 3 136 -11 6 1214 302 0 26 0 chr5 82479748 82479786 -70057473 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1214 1113 76 0 7 chr5 82479786 82479797 -70057462 + B1_Mm SINE Alu 137 147 0 6 1214 23 33 0 0 chr5 82479963 82479993 -70057266 + AT_rich Low_complexity Low_complexity 1 30 0 6 1214 297 0 0 0 chr5 82481036 82481069 -70056190 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1214 471 151 279 0 chr5 82482034 82482217 -70055042 - Lx9 LINE L1 0 7644 7411 6 1214 832 249 17 42 chr5 82482215 82482454 -70054805 + Lx9 LINE L1 7159 7391 -253 6 1214 803 318 45 0 chr5 82482454 82482677 -70054582 - B4 SINE B4 -59 233 1 6 1214 24 100 0 0 chr5 82482875 82482955 -70054304 + AT_rich Low_complexity Low_complexity 1 80 0 6 1214 3016 48 0 0 chr5 82483174 82483531 -70053728 - IAPEY2_LTR LTR ERVK 0 357 1 6 1214 4686 54 0 3 chr5 82483540 82484121 -70053138 + L1Md_F2 LINE L1 5991 6569 -13 6 1214 1435 282 89 27 chr5 82484257 82484763 -70052496 - Lx5 LINE L1 -32 7428 6516 6 1214 867 262 44 29 chr5 82484750 82485025 -70052234 + Lx6 LINE L1 6556 6834 -626 6 1214 321 250 183 37 chr5 82485164 82485355 -70051904 + LTR80B LTR ERVL 75 293 -291 6 1214 1952 296 120 61 chr5 82485730 82486544 -70050715 - Lx6 LINE L1 -42 7418 6557 6 1214 3049 199 19 5 chr5 82486544 82487376 -70049883 - Lx6 LINE L1 -1347 6113 5274 6 1214 476 250 207 83 chr5 82487712 82487978 -70049281 - MLT2D LTR ERVL -115 299 1 6 1214 22 0 0 0 chr5 82488609 82488631 -70048628 + AT_rich Low_complexity Low_complexity 1 22 0 6 1214 1551 188 25 87 chr5 82489860 82489947 -70047312 - Lx4A LINE L1 -29 7029 6946 6 1214 2844 95 5 2 chr5 82489947 82490346 -70046913 - MTB LTR MaLR 0 400 1 6 1214 1551 188 25 87 chr5 82490346 82490625 -70046634 - Lx4A LINE L1 -113 6945 6686 6 1214 278 149 21 0 chr5 82492121 82492168 -70045091 + L1MC LINE L1 5704 5751 -593 6 1214 235 51 0 0 chr5 82492186 82492225 -70045034 - L1Md_F3 LINE L1 -14 6573 6535 6 1214 36505 83 16 12 chr5 82492454 82498737 -70038522 - L1Md_F3 LINE L1 -59 6528 220 6 1214 602 267 138 40 chr5 82498751 82499207 -70038052 + L1MC1 LINE L1 5772 6272 -61 6 1214 300 70 0 0 chr5 82500028 82500071 -70037188 + (CAG)n Simple_repeat Simple_repeat 1 43 0 1 1214 1642 162 106 36 chr5 82500957 82501315 -70035944 - ORR1C2 LTR MaLR 0 384 2 2 1214 1733 210 139 37 chr5 82501396 82502121 -70035138 - Lx9 LINE L1 -1593 6051 5217 3 1214 2772 73 46 0 chr5 82502192 82502563 -70034696 - L1_Mus1 LINE L1 -310 6257 5870 4 1214 2325 54 14 0 chr5 82502563 82502859 -70034400 + L1_Mus1 LINE L1 6268 6567 0 4 1214 187 301 67 27 chr5 82503590 82503665 -70033594 - MIR SINE MIR -173 89 12 5 1214 229 245 0 0 chr5 82503814 82503863 -70033396 + (TTGG)n Simple_repeat Simple_repeat 3 51 0 6 1214 372 191 0 0 chr5 82505207 82505301 -70031958 + (ATG)n Simple_repeat Simple_repeat 3 96 0 7 1214 338 102 20 0 chr5 82506049 82506098 -70031161 + Lx LINE L1 6419 6468 -186 8 1214 402 268 24 0 chr5 82506899 82506981 -70030278 - B1F SINE Alu -65 84 1 9 1214 255 222 0 31 chr5 82508392 82508457 -70028802 + CT-rich Low_complexity Low_complexity 1 63 0 1 1214 263 173 24 24 chr5 82508479 82508562 -70028697 + CT-rich Low_complexity Low_complexity 1 83 0 1 1214 699 12 0 0 chr5 82508637 82508717 -70028542 + (GAA)n Simple_repeat Simple_repeat 2 81 0 1 1214 459 0 0 0 chr5 82508817 82508868 -70028391 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 1 1214 1461 210 65 20 chr5 82510918 82511272 -70025987 + ORR1D1 LTR MaLR 1 370 -4 1 1214 4121 89 48 24 chr5 82511852 82512473 -70024786 + Lx3_Mus LINE L1 6374 7009 0 1 1214 270 291 139 28 chr5 82513212 82513392 -70023867 - L1M3 LINE L1 -909 5231 5032 1 1214 200 211 19 0 chr5 82513697 82513749 -70023510 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 1 1214 414 291 669 18 chr5 82513756 82513896 -70023363 + Lx8 LINE L1 6896 7123 -350 1 1214 501 17 0 0 chr5 82513896 82513954 -70023305 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1214 414 300 155 46 chr5 82513954 82514249 -70023010 + Lx8 LINE L1 7124 7454 -19 1 1214 28 0 0 0 chr5 82514249 82514277 -70022982 + AT_rich Low_complexity Low_complexity 1 28 0 1 1214 896 95 124 0 chr5 82514280 82514417 -70022842 - L1_Mus3 LINE L1 -132 6506 6353 2 1214 3461 121 6 16 chr5 82514415 82514737 -70022522 - L1_Mm LINE L1 -956 4927 4611 2 1214 2769 52 3 9 chr5 82514737 82515085 -70022174 + ORR1A0 LTR MaLR 1 346 0 2 1214 12632 66 50 1 chr5 82515085 82516794 -70020465 + ORR1A0-int LTR MaLR 1 1792 0 2 1214 2490 58 55 0 chr5 82516794 82517122 -70020137 + ORR1A0 LTR MaLR 1 346 0 2 1214 3461 121 6 16 chr5 82517122 82517344 -70019915 - L1_Mm LINE L1 -1273 4610 4389 2 1214 2524 191 4 9 chr5 82517344 82517804 -70019455 + Lx4A LINE L1 6592 7049 -9 2 1214 23 54 0 0 chr5 82517804 82517841 -70019418 + AT_rich Low_complexity Low_complexity 1 37 0 2 1214 394 118 43 11 chr5 82517955 82518049 -70019210 + (TA)n Simple_repeat Simple_repeat 2 98 0 2 1214 1077 73 0 7 chr5 82518072 82518209 -70019050 + B1_Mm SINE Alu 5 140 -7 2 1214 348 24 0 0 chr5 82518215 82518256 -70019003 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1214 186 103 0 0 chr5 82519482 82519511 -70017748 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1214 404 37 19 0 chr5 82519530 82519584 -70017675 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2 1214 26 30 0 0 chr5 82519946 82519979 -70017280 + AT_rich Low_complexity Low_complexity 1 33 0 3 1214 4198 100 13 10 chr5 82522295 82522921 -70014338 - Lx3_Mus LINE L1 -12 6997 6370 3 1214 2738 60 3 3 chr5 82522921 82523259 -70014000 + L1_Mm LINE L1 5248 5586 -297 3 1214 7988 52 3 0 chr5 82523259 82524250 -70013009 + L1Md_F2 LINE L1 5587 6580 -2 3 1214 984 81 22 0 chr5 82524409 82524545 -70012714 + B1_Mus1 SINE Alu 1 139 -9 3 1214 502 349 60 0 chr5 82524615 82524847 -70012412 - MER2 DNA MER2_type -26 319 74 3 1214 22 70 0 0 chr5 82525102 82525145 -70012114 + AT_rich Low_complexity Low_complexity 1 43 0 3 1214 375 23 0 0 chr5 82525453 82525497 -70011762 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 3 1214 985 116 0 0 chr5 82525498 82525636 -70011623 - B1_Mus1 SINE Alu -7 141 4 3 1214 547 306 125 5 chr5 82525785 82525969 -70011290 + B3 SINE B2 1 206 -10 3 1214 297 0 0 0 chr5 82526953 82526986 -70010273 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1214 441 0 0 0 chr5 82526988 82527037 -70010222 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1214 212 211 0 37 chr5 82528191 82528245 -70009014 + CT-rich Low_complexity Low_complexity 3 54 0 4 1214 351 121 0 0 chr5 82529388 82529446 -70007813 + (CAATA)n Simple_repeat Simple_repeat 1 58 0 4 1214 326 351 60 22 chr5 82529520 82529654 -70007605 + B4 SINE B4 66 204 -88 4 1214 604 248 21 35 chr5 82529548 82529690 -70007569 + B1_Mur1 SINE Alu 10 149 0 4 1214 354 324 88 16 chr5 82529739 82529921 -70007338 - B3A SINE B2 -3 195 1 4 1214 348 338 65 74 chr5 82530697 82530935 -70006324 - L1ME3B LINE L1 -309 5931 5683 4 1214 300 53 0 0 chr5 82530935 82530973 -70006286 + (CCA)n Simple_repeat Simple_repeat 1 38 0 4 1214 348 338 65 74 chr5 82530973 82531044 -70006215 - L1ME3B LINE L1 -558 5682 5625 4 1214 1153 68 0 0 chr5 82531051 82531198 -70006061 + B1_Mus1 SINE Alu 2 148 0 4 1214 372 146 0 0 chr5 82531198 82531287 -70005972 + (A)n Simple_repeat Simple_repeat 1 89 0 5 1214 288 0 0 0 chr5 82532960 82532992 -70004267 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5 1214 3541 116 88 14 chr5 82532992 82533415 -70003844 - Lx3_Mus LINE L1 -23 6986 6520 5 1214 4012 100 26 19 chr5 82533415 82534039 -70003220 - L1_Mus3 LINE L1 -3 6635 6008 5 1214 3541 116 88 14 chr5 82534039 82534192 -70003067 - Lx3_Mus LINE L1 -490 6519 6367 5 1214 805 143 424 0 chr5 82534586 82534817 -70002442 - ORR1A4 LTR MaLR 0 329 1 5 1214 21 0 0 0 chr5 82535024 82535045 -70002214 + AT_rich Low_complexity Low_complexity 1 21 0 5 1214 248 304 82 82 chr5 82535147 82535305 -70001954 + MLT1A1 LTR MaLR 8 165 -243 5 1214 290 262 38 0 chr5 82535317 82535397 -70001862 + MLT1A1 LTR MaLR 297 379 -29 5 1214 579 29 0 0 chr5 82535536 82535605 -70001654 + (TTC)n Simple_repeat Simple_repeat 3 71 0 5 1214 1835 137 3 13 chr5 82535632 82535942 -70001317 - Lx3A LINE L1 -4 6977 6671 5 1214 523 325 12 0 chr5 82536159 82536319 -70000940 + MTEa LTR MaLR 210 371 -8 5 1214 558 344 90 28 chr5 82536914 82537270 -69999989 + L1MA6 LINE L1 54 431 -6737 6 1214 372 282 77 11 chr5 82537628 82537811 -69999448 + L1MA6 LINE L1 3264 3458 -3706 6 1214 660 309 106 32 chr5 82537929 82538817 -69998442 + L1MA6 LINE L1 6124 7085 -236 6 1214 237 271 40 32 chr5 82539261 82539387 -69997872 - L1MC4 LINE L1 -149 7893 7767 6 1214 234 341 54 16 chr5 82539925 82540110 -69997149 + RLTR21 LTR ERVK 1071 1262 -310 6 1214 1414 330 17 43 chr5 82540136 82540854 -69996405 + Lx9 LINE L1 6367 7065 -579 6 1214 341 300 22 51 chr5 82540893 82541030 -69996229 - RMER15 LTR ERVL -414 161 29 6 1214 333 330 63 117 chr5 82541329 82541552 -69995707 - B3 SINE B2 -3 213 3 6 1214 184 175 98 66 chr5 82542767 82542828 -69994431 + L4 LINE RTE 552 614 -1415 6 1214 320 294 41 52 chr5 82542901 82543073 -69994186 - L1MC2 LINE L1 -106 6238 6069 6 1214 374 315 183 17 chr5 82543324 82543744 -69993515 - L1MC2 LINE L1 -2014 5771 5282 6 1214 318 282 78 17 chr5 82543803 82543983 -69993276 - L1MC2 LINE L1 -923 5223 5033 6 1214 377 279 43 101 chr5 82544046 82544253 -69993006 - L1MC2 LINE L1 -1979 4167 3973 6 1214 557 239 46 0 chr5 82544304 82544434 -69992825 + B1_Mm SINE Alu 3 138 -9 6 1214 1081 291 102 53 chr5 82544666 82545345 -69991914 - Lx9 LINE L1 -1 7643 6932 6 1214 502 301 90 0 chr5 82545425 82545591 -69991668 + Lx9 LINE L1 6521 6701 -943 7 1214 2066 139 72 8 chr5 82545591 82545954 -69991305 + ORR1B1 LTR MaLR 1 386 -8 7 1214 269 173 0 19 chr5 82545954 82546007 -69991252 + Lx9 LINE L1 6693 6744 -900 7 1214 711 134 25 34 chr5 82546293 82546718 -69990541 + CT-rich Low_complexity Low_complexity 1 421 0 7 1214 366 178 25 33 chr5 82546731 82546853 -69990406 + CT-rich Low_complexity Low_complexity 3 123 0 7 1214 315 350 111 0 chr5 82546876 82547126 -69990133 + MLT2D LTR ERVL 111 540 -19 7 1214 207 0 0 0 chr5 82547366 82547389 -69989870 + (TTAAA)n Simple_repeat Simple_repeat 5 27 0 7 1214 218 95 24 0 chr5 82547413 82547455 -69989804 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 7 1214 243 257 0 0 chr5 82547764 82547838 -69989421 + GA-rich Low_complexity Low_complexity 1 74 0 7 1214 341 277 69 0 chr5 82549297 82549398 -69987861 - PB1D9 SINE Alu -11 109 2 7 1214 4968 26 0 0 chr5 82550009 82550605 -69986654 - Lx3B LINE L1 -1211 5762 5168 7 1214 7114 28 0 4 chr5 82550605 82551441 -69985818 + L1Md_T LINE L1 5745 6577 -5 7 1214 197 33 33 0 chr5 82552827 82552857 -69984402 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 8 1214 351 293 0 0 chr5 82554045 82554120 -69983139 - ID4 SINE ID -4 79 5 8 1214 306 132 0 0 chr5 82554494 82554547 -69982712 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 1214 1356 317 51 35 chr5 82555450 82556080 -69981179 + Charlie25 DNA MER1_type 64 703 -1821 8 1214 237 272 12 24 chr5 82556241 82556324 -69980935 + GA-rich Low_complexity Low_complexity 4 85 0 8 1214 367 333 38 60 chr5 82556744 82557009 -69980250 + Charlie25 DNA MER1_type 949 1207 -1317 8 1214 231 208 0 0 chr5 82557051 82557104 -69980155 + T-rich Low_complexity Low_complexity 2 54 0 8 1214 230 355 44 26 chr5 82557514 82557627 -69979632 + PB1D9 SINE Alu 1 115 -5 8 1214 2475 84 0 3 chr5 82557779 82558123 -69979136 + L1Md_F2 LINE L1 6240 6582 0 8 1214 3313 234 78 0 chr5 82558654 82559395 -69977864 - Lx5 LINE L1 -3 7047 6249 8 1214 271 303 20 40 chr5 82559449 82559600 -69977659 + Charlie10 DNA MER1_type 373 520 -2302 8 1214 29 0 0 0 chr5 82559614 82559643 -69977616 + AT_rich Low_complexity Low_complexity 1 29 0 9 1214 195 42 0 0 chr5 82560181 82560205 -69977054 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 9 1214 405 340 114 29 chr5 82560225 82560498 -69976761 - MER92B LTR ERV1 -314 322 27 9 1214 1098 293 147 27 chr5 82560484 82561081 -69976178 + Charlie10 DNA MER1_type 1047 1715 -1107 8 1214 34 55 0 0 chr5 82561139 82561194 -69976065 + AT_rich Low_complexity Low_complexity 1 55 0 9 1214 1123 71 0 0 chr5 82561281 82561421 -69975838 - B1_Mus2 SINE Alu -6 141 2 9 1214 465 34 0 0 chr5 82561451 82561510 -69975749 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1214 729 308 125 35 chr5 82561517 82561981 -69975278 - Lx9 LINE L1 -172 7472 6967 9 1214 1347 287 125 53 chr5 82561972 82563054 -69974205 + Lx9 LINE L1 5683 6953 -691 9 1214 985 244 64 77 chr5 82563157 82563548 -69973711 + Lx9 LINE L1 7251 7636 -8 9 1214 21 0 0 0 chr5 82563621 82563642 -69973617 + AT_rich Low_complexity Low_complexity 1 21 0 9 1214 198 103 0 0 chr5 82563867 82563896 -69973363 + (GGGTG)n Simple_repeat Simple_repeat 5 33 0 9 1214 364 318 26 26 chr5 82564196 82564309 -69972950 + B1_Mur1 SINE Alu 4 116 -33 9 1214 339 85 0 0 chr5 82564323 82564370 -69972889 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 1 1214 933 304 70 27 chr5 82564388 82564943 -69972316 + Charlie10 DNA MER1_type 2045 2623 -199 8 1214 237 180 0 0 chr5 82565439 82565489 -69971770 + (TA)n Simple_repeat Simple_repeat 2 51 0 1 1214 341 298 16 16 chr5 82565613 82565739 -69971520 + MLT1D LTR MaLR 72 197 -308 1 1214 1238 261 10 19 chr5 82565768 82566077 -69971182 - Lx6 LINE L1 -830 6630 6325 1 1214 576 298 101 0 chr5 82566144 82566312 -69970947 + B3 SINE B2 27 211 -5 1 1214 216 67 0 0 chr5 82566330 82566360 -69970899 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 1214 406 268 91 23 chr5 82566420 82566568 -69970691 + B4A SINE B4 2 149 -143 1 1214 288 0 0 0 chr5 82566604 82566636 -69970623 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1214 466 369 39 22 chr5 82567025 82567255 -69970004 - MLT1D LTR MaLR 0 505 272 1 1214 399 266 83 0 chr5 82567347 82567456 -69969803 - MLT1D LTR MaLR -359 146 29 1 1214 1166 28 14 0 chr5 82567741 82567885 -69969374 - B1_Mm SINE Alu 0 147 2 1 1214 1367 244 9 19 chr5 82568175 82568496 -69968763 - ORR1C1 LTR MaLR 0 378 61 1 1214 3069 295 38 23 chr5 82568487 82569444 -69967815 - ORR1C1-int LTR MaLR -392 978 8 1 1214 1593 181 44 80 chr5 82569451 82569841 -69967418 - ORR1C1 LTR MaLR 0 378 3 1 1214 21 57 0 0 chr5 82570002 82570037 -69967222 + AT_rich Low_complexity Low_complexity 1 35 0 1 1214 4427 132 173 75 chr5 82570177 82571117 -69966142 - RLTR13D4 LTR ERVK 0 1033 1 1 1214 1488 329 73 31 chr5 82571214 82571550 -69965709 + Lx8 LINE L1 6219 6555 -918 1 1214 859 230 135 63 chr5 82571550 82571793 -69965466 + ORR1D1 LTR MaLR 1 273 -101 1 1214 405 0 0 0 chr5 82571793 82571838 -69965421 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1 1214 859 230 135 63 chr5 82571838 82571942 -69965317 + ORR1D1 LTR MaLR 274 372 -2 1 1214 1488 329 73 31 chr5 82571942 82572442 -69964817 + Lx8 LINE L1 6556 7090 -383 1 1214 295 400 0 0 chr5 82573064 82573189 -69964070 - PB1 SINE Alu -2 125 1 1 1214 548 308 36 5 chr5 82573875 82574071 -69963188 - B3 SINE B2 -10 206 5 1 1214 3729 57 0 2 chr5 82574107 82574583 -69962676 - L1Md_F2 LINE L1 -12 6570 6096 1 1214 1002 78 0 0 chr5 82574586 82574714 -69962545 + L1Md_F2 LINE L1 5972 6099 -483 1 1215 229 233 0 0 chr5 82575889 82575932 -69961327 - MLT1H-int LTR MaLR -548 861 819 1 1215 897 253 139 6 chr5 82576083 82576413 -69960846 - ORR1D1 LTR MaLR 0 374 1 1 1215 3675 104 24 15 chr5 82576465 82577003 -69960256 - L1_Mus4 LINE L1 0 6636 6094 1 1215 2151 177 13 5 chr5 82577148 82577539 -69959720 + ORR1B1 LTR MaLR 1 394 0 1 1215 5472 215 65 39 chr5 82577539 82579010 -69958249 + ORR1B1-int LTR MaLR 1 1509 0 1 1215 2021 176 38 19 chr5 82579010 82579381 -69957878 + ORR1B1 LTR MaLR 1 378 -16 1 1215 2144 165 26 16 chr5 82579419 82579800 -69957459 + ORR1B1 LTR MaLR 1 385 -9 1 1215 26 50 0 0 chr5 82579981 82580021 -69957238 + AT_rich Low_complexity Low_complexity 1 40 0 1 1215 313 316 135 45 chr5 82580175 82580530 -69956729 - L1M5 LINE L1 -2962 3184 2798 1 1215 278 194 0 14 chr5 82581681 82581754 -69955505 + CT-rich Low_complexity Low_complexity 3 74 0 1 1215 310 300 78 43 chr5 82581770 82581885 -69955374 - HAL1-3A_ME LINE L1 -67 2791 2673 1 1215 366 282 6 35 chr5 82581886 82582055 -69955204 + T-rich Low_complexity Low_complexity 3 166 0 1 1215 355 49 16 32 chr5 82583406 82583469 -69953790 + (TTTTG)n Simple_repeat Simple_repeat 4 65 0 1 1215 252 242 0 16 chr5 82583472 82583535 -69953724 - B1_Mur2 SINE Alu -1 148 87 1 1215 2399 180 229 7 chr5 82583535 82584099 -69953160 + RMER6C LTR ERVK 1 690 0 1 1215 329 292 0 103 chr5 82584099 82584201 -69953058 - B1_Mur2 SINE Alu -57 92 2 1 1215 255 297 0 51 chr5 82584140 82584218 -69953041 - B4 SINE B4 -146 146 73 1 1215 225 65 0 0 chr5 82584455 82584486 -69952773 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1215 263 290 13 70 chr5 82585308 82585407 -69951852 - MLT1F2 LTR MaLR -1 548 454 1 1215 180 135 0 0 chr5 82586283 82586320 -69950939 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1215 25 99 0 0 chr5 82586599 82586680 -69950579 + AT_rich Low_complexity Low_complexity 1 81 0 1 1215 883 214 86 128 chr5 82587263 82587518 -69949741 - RMER1B Other Other -15 1051 820 1 1215 1023 73 0 0 chr5 82587518 82587655 -69949604 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 1 1215 288 0 0 0 chr5 82587655 82587686 -69949573 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 1 1215 783 21 0 0 chr5 82587686 82587779 -69949480 + (TTTTC)n Simple_repeat Simple_repeat 2 94 0 1 1215 883 213 89 134 chr5 82587779 82587915 -69949344 - RMER1B Other Other -247 819 691 1 1215 24 0 0 0 chr5 82588121 82588145 -69949114 + AT_rich Low_complexity Low_complexity 1 24 0 1 1215 238 317 0 19 chr5 82589009 82589115 -69948144 + MLT1A1 LTR MaLR 300 403 -5 1 1215 1521 186 30 77 chr5 82589748 82590086 -69947173 - RLTR41 LTR ERV1 -63 383 62 1 1215 409 326 41 14 chr5 82590245 82590466 -69946793 - MuRRS4-int LTR ERV1 -174 4889 4663 1 1215 316 359 98 29 chr5 82590881 82591125 -69946134 - MLT1G1 LTR MaLR -8 571 311 1 1215 209 208 0 0 chr5 82591360 82591408 -69945851 + T-rich Low_complexity Low_complexity 1 48 0 1 1215 663 135 28 99 chr5 82591700 82591881 -69945378 + Lx3B LINE L1 6803 6970 -3 1 1215 385 319 87 68 chr5 82593117 82593383 -69943876 - MLT1E1A LTR MaLR -2 678 408 1 1215 204 206 0 0 chr5 82593530 82593564 -69943695 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1215 345 366 17 64 chr5 82593564 82593736 -69943523 - RSINE1 SINE B4 0 165 2 1 1215 392 326 144 40 chr5 82593750 82594153 -69943106 + LTR68 LTR ERV1 25 469 -271 1 1215 271 322 77 17 chr5 82594190 82594307 -69942952 - B1F SINE Alu 0 149 26 1 1215 489 325 10 96 chr5 82594348 82594556 -69942703 + MTD LTR MaLR 29 218 -201 1 1215 4513 230 86 24 chr5 82594557 82595780 -69941479 + Lx2B LINE L1 5695 6993 -7 1 1215 31 0 0 0 chr5 82596821 82596852 -69940407 + AT_rich Low_complexity Low_complexity 1 31 0 1 1215 23 0 0 0 chr5 82597197 82597220 -69940039 + AT_rich Low_complexity Low_complexity 1 23 0 1 1215 393 288 87 68 chr5 82597475 82597819 -69939440 - MTE2a LTR MaLR 0 421 3 1 1215 532 337 37 26 chr5 82597958 82598227 -69939032 + MLT1A0 LTR MaLR 92 367 -7 1 1215 1102 230 134 57 chr5 82599082 82599433 -69937826 + ORR1C1 LTR MaLR 1 378 0 1 1215 4345 249 50 37 chr5 82599433 82600783 -69936476 + ORR1C1-int LTR MaLR 1 1367 -3 1 1215 198 336 63 57 chr5 82601205 82601363 -69935896 + L2 LINE L2 2309 2467 -952 1 1215 423 136 27 0 chr5 82601507 82601617 -69935642 + (CA)n Simple_repeat Simple_repeat 1 113 0 1 1215 1557 316 112 38 chr5 82601618 82602666 -69934593 - Lx9 LINE L1 -219 7425 6301 1 1215 333 118 0 0 chr5 82602689 82602740 -69934519 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1215 231 36 0 0 chr5 82602787 82602815 -69934444 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1 1215 1086 64 7 0 chr5 82602819 82602959 -69934300 - B1_Mus1 SINE Alu -7 141 1 1 1215 306 323 74 67 chr5 82603078 82603377 -69933882 - Lx9 LINE L1 -1542 6102 5802 1 1215 261 0 0 0 chr5 82603772 82603801 -69933458 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1215 2443 194 60 2 chr5 82603884 82604384 -69932875 - L1Md_F LINE L1 -5715 804 276 1 1215 22 0 0 0 chr5 82604764 82604786 -69932473 + AT_rich Low_complexity Low_complexity 1 22 0 1 1215 207 0 0 0 chr5 82605134 82605157 -69932102 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1215 26 82 0 0 chr5 82605664 82605725 -69931534 + AT_rich Low_complexity Low_complexity 1 61 0 1 1215 21 0 0 0 chr5 82605811 82605832 -69931427 + AT_rich Low_complexity Low_complexity 1 21 0 1 1215 24 0 0 0 chr5 82605846 82605870 -69931389 + AT_rich Low_complexity Low_complexity 1 24 0 1 1215 1764 160 19 22 chr5 82606105 82606386 -69930873 + Lx4A LINE L1 6418 6704 -354 1 1215 2323 73 0 0 chr5 82606386 82606689 -69930570 + L1_Mus1 LINE L1 6265 6567 0 1 1215 1764 160 19 22 chr5 82606689 82606721 -69930538 + Lx4A LINE L1 6705 6730 -328 1 1215 494 232 7 0 chr5 82608612 82608750 -69928509 + (TA)n Simple_repeat Simple_repeat 1 139 0 1 1215 30278 39 7 2 chr5 82609075 82614317 -69922942 + L1Md_T LINE L1 347 5586 -297 1 1215 8448 31 0 0 chr5 82614317 82615312 -69921947 + L1Md_T LINE L1 5587 6581 -1 1 1215 1709 328 40 12 chr5 82615340 82616066 -69921193 + Lx8 LINE L1 6290 7035 -438 1 1215 472 208 15 0 chr5 82616626 82616756 -69920503 - Lx9 LINE L1 0 7644 7513 1 1215 1141 88 0 0 chr5 82617538 82617685 -69919574 + B1_Mm SINE Alu 1 147 0 1 1215 420 130 0 0 chr5 82617687 82617756 -69919503 + (A)n Simple_repeat Simple_repeat 1 69 0 1 1215 1000 192 29 54 chr5 82618929 82619205 -69918054 + RMER17C LTR ERVK 1 269 -141 1 1215 3131 81 0 0 chr5 82619224 82619633 -69917626 - L1_Mus1 LINE L1 0 6567 6159 1 1215 421 26 221 0 chr5 82619633 82619710 -69917549 + L1_Mus1 LINE L1 6065 6158 -480 1 1215 291 85 0 0 chr5 82619831 82619878 -69917381 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1215 206 278 11 32 chr5 82619932 82620025 -69917234 + (TATATG)n Simple_repeat Simple_repeat 5 95 0 1 1215 390 187 39 54 chr5 82620270 82620400 -69916859 + Lx7 LINE L1 7420 7547 -149 1 1215 1035 268 134 18 chr5 82620448 82620790 -69916469 + MER89 LTR ERV1 178 559 0 1 1215 23 0 0 0 chr5 82620854 82620877 -69916382 + AT_rich Low_complexity Low_complexity 1 23 0 1 1215 390 42 0 0 chr5 82621100 82621148 -69916111 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1215 22 109 0 0 chr5 82622536 82622628 -69914631 + AT_rich Low_complexity Low_complexity 1 92 0 1 1215 322 74 0 36 chr5 82622662 82622718 -69914541 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1215 38373 52 6 9 chr5 82623482 82629797 -69907462 - L1Md_T LINE L1 0 6582 281 1 1215 428 35 17 0 chr5 82629834 82629892 -69907367 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 1 1215 490 239 54 61 chr5 82630449 82630596 -69906663 - B3 SINE B2 0 216 71 1 1215 363 121 0 0 chr5 82630722 82630780 -69906479 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1215 243 0 0 0 chr5 82631137 82631164 -69906095 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1215 1129 285 120 18 chr5 82631171 82631571 -69905688 - Lx6 LINE L1 -26 7434 6994 1 1215 254 326 43 0 chr5 82631567 82631659 -69905600 - Lx6 LINE L1 -512 6538 6457 1 1215 213 39 0 0 chr5 82632049 82632075 -69905184 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1215 1812 91 4 3 chr5 82632470 82632737 -69904522 - L1M2 LINE L1 -3453 2690 2422 1 1215 189 0 0 0 chr5 82633069 82633090 -69904169 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1215 819 152 14 21 chr5 82634388 82634907 -69902352 + GA-rich Low_complexity Low_complexity 1 515 0 2 1215 7241 122 17 7 chr5 82635075 82636845 -69900414 + L1_Mus4 LINE L1 4850 6636 0 2 1215 288 378 98 22 chr5 82637740 82638016 -69899243 - L2 LINE L2 -474 2945 2649 2 1215 207 355 0 0 chr5 82638169 82638245 -69899014 - L2 LINE L2 -966 2453 2378 2 1215 180 0 0 0 chr5 82638439 82638459 -69898800 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1215 425 212 12 0 chr5 82638507 82638592 -69898667 + RMER20B LTR ERVK 1 86 -541 2 1215 666 253 40 99 chr5 82638593 82638795 -69898464 + RMER20B LTR ERVK 378 567 -60 2 1215 324 0 0 0 chr5 82640066 82640102 -69897157 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1215 239 224 0 0 chr5 82640154 82640221 -69897038 + Lx8 LINE L1 7407 7473 0 2 1215 894 293 58 19 chr5 82640607 82640972 -69896287 - MTE2b LTR MaLR 0 379 1 2 1215 7726 58 7 8 chr5 82641388 82642586 -69894673 - L1_Mus1 LINE L1 0 6567 5369 2 1215 7338 104 10 5 chr5 82642586 82643665 -69893594 + L1_Mus1 LINE L1 4289 5373 -510 2 1215 261 119 0 0 chr5 82643971 82644013 -69893246 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1215 255 133 0 0 chr5 82645366 82645411 -69891848 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1215 195 42 0 0 chr5 82645922 82645946 -69891313 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1215 366 61 0 0 chr5 82645947 82645996 -69891263 + (GGA)n Simple_repeat Simple_repeat 1 49 0 2 1215 238 345 103 5 chr5 82646034 82646229 -69891030 + MLT1H-int LTR MaLR 641 854 -555 2 1215 1629 271 36 10 chr5 82646321 82646816 -69890443 - Lx9 LINE L1 -465 7179 6672 2 1215 430 223 75 0 chr5 82646823 82646917 -69890342 - Lx9 LINE L1 -1154 6490 6390 2 1215 225 257 14 0 chr5 82646982 82647052 -69890207 - Lx9 LINE L1 -1398 6246 6176 2 1215 1566 241 110 19 chr5 82647075 82647627 -69889632 - Lx9 LINE L1 -1637 6007 5376 2 1215 643 314 14 19 chr5 82647669 82647877 -69889382 - B3 SINE B2 -6 210 4 2 1215 1200 245 123 13 chr5 82647889 82648352 -69888907 - Lx9 LINE L1 -2827 3020 2507 2 1215 2168 214 89 31 chr5 82648368 82649168 -69888091 - Lx9 LINE L1 -3748 2099 1254 2 1215 483 214 78 14 chr5 82649227 82649369 -69887890 - Lx9 LINE L1 -6450 1158 1008 2 1215 347 231 44 0 chr5 82649970 82650061 -69887198 + L1MA10 LINE L1 6233 6327 -7 2 1215 331 308 96 80 chr5 82651286 82651473 -69885786 + B3A SINE B2 9 198 0 2 1215 22 0 0 0 chr5 82653655 82653677 -69883582 + AT_rich Low_complexity Low_complexity 1 22 0 2 1215 227 312 97 21 chr5 82654519 82654663 -69882596 + MLT2B4 LTR ERVL 372 526 -30 2 1215 216 0 0 0 chr5 82655313 82655337 -69881922 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1215 350 147 0 14 chr5 82655855 82655924 -69881335 + C-rich Low_complexity Low_complexity 6 73 0 2 1215 329 309 58 22 chr5 82655951 82656090 -69881169 - Lx5 LINE L1 -361 6689 6546 2 1215 255 284 116 0 chr5 82656058 82656153 -69881106 - Lx6 LINE L1 -567 6893 6788 2 1215 259 247 24 47 chr5 82656326 82656411 -69880848 - Lx4A LINE L1 -37 7021 6939 2 1215 306 138 108 0 chr5 82656414 82656479 -69880780 + HAL1-3A_ME LINE L1 1957 2028 -830 2 1215 288 0 0 0 chr5 82656487 82656519 -69880740 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1215 540 0 0 0 chr5 82656519 82656579 -69880680 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1215 405 222 12 0 chr5 82656579 82656660 -69880599 - Lx5 LINE L1 -157 6893 6812 2 1215 7698 190 48 3 chr5 82656677 82658708 -69878551 - Lx5 LINE L1 -629 6421 4287 2 1215 3699 44 2 0 chr5 82658733 82659188 -69878071 + L1Md_F2 LINE L1 6123 6578 -4 2 1215 298 355 93 0 chr5 82659309 82659492 -69877767 - B3 SINE B2 -15 201 2 2 1215 443 18 18 0 chr5 82659531 82659587 -69877672 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1215 258 375 112 68 chr5 82659637 82659843 -69877416 - B4A SINE B4 -76 216 2 2 1215 355 276 75 23 chr5 82660002 82660176 -69877083 - L1MEb LINE L1 -5162 908 726 2 1215 1023 299 98 21 chr5 82660618 82661100 -69876159 - Lx8 LINE L1 -2 7471 6953 2 1215 1937 261 17 22 chr5 82661331 82661617 -69875642 - Lx6 LINE L1 -41 7419 7135 2 1215 225 0 0 0 chr5 82661617 82661642 -69875617 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1215 1937 261 17 22 chr5 82661642 82661817 -69875442 - Lx6 LINE L1 -326 7134 6960 2 1215 10277 65 1 32 chr5 82662490 82663916 -69873343 - L1Md_F2 LINE L1 -490 5393 4011 2 1215 1466 47 0 0 chr5 82663912 82664083 -69873176 + L1Md_F2 LINE L1 5416 5586 -297 2 1215 7459 55 21 4 chr5 82664083 82665059 -69872200 + L1Md_F2 LINE L1 5587 6579 -3 2 1215 243 330 94 0 chr5 82665635 82665741 -69871518 - PB1D7 SINE Alu -3 117 2 2 1215 21 36 0 0 chr5 82666072 82666100 -69871159 + AT_rich Low_complexity Low_complexity 1 28 0 2 1215 268 291 73 15 chr5 82667314 82667450 -69869809 - Charlie1a DNA MER1_type -23 1432 1289 2 1215 282 301 200 29 chr5 82667622 82667827 -69869432 + MLT1A0 LTR MaLR 108 347 -18 2 1215 5653 70 8 0 chr5 82667871 82668601 -69868658 - L1_Mus2 LINE L1 -1 6565 5830 2 1215 7643 98 5 35 chr5 82668601 82669790 -69867469 + L1_Mm LINE L1 3861 5013 -870 2 1215 1172 328 94 60 chr5 82669798 82670777 -69866482 - Charlie1a DNA MER1_type -315 1140 129 2 1215 414 360 109 33 chr5 82672184 82672604 -69864655 + MLT1C LTR MaLR 2 453 -14 2 1215 294 143 0 0 chr5 82673921 82673970 -69863289 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 2 1215 506 57 14 0 chr5 82674201 82674271 -69862988 + (GA)n Simple_repeat Simple_repeat 1 71 0 2 1215 259 114 0 0 chr5 82676151 82676186 -69861073 - U2 snRNA snRNA -153 35 1 2 1215 24 0 0 0 chr5 82677662 82677686 -69859573 + AT_rich Low_complexity Low_complexity 1 24 0 2 1215 4086 39 4 0 chr5 82678390 82678881 -69858378 - L1Md_F3 LINE L1 -14 6570 6078 2 1215 4993 124 33 6 chr5 82678932 82679716 -69857543 - L1_Mus4 LINE L1 0 6636 5832 2 1215 611 72 0 40 chr5 82680615 82680630 -69856629 + L1_Mus3 LINE L1 6537 6549 -89 2 1215 865 63 35 0 chr5 82680630 82680772 -69856487 + (GA)n Simple_repeat Simple_repeat 2 148 0 2 1215 611 72 0 40 chr5 82680772 82680857 -69856402 + L1_Mus3 LINE L1 6550 6633 -5 2 1215 477 312 80 5 chr5 82681032 82681232 -69856027 - B3 SINE B2 0 216 2 2 1215 180 97 0 0 chr5 82681245 82681276 -69855983 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1215 180 0 0 0 chr5 82681556 82681576 -69855683 + (TTTTTA)n Simple_repeat Simple_repeat 4 23 0 2 1215 1301 70 0 0 chr5 82682166 82682351 -69854908 + L1Md_F2 LINE L1 6398 6582 0 2 1215 6294 98 25 3 chr5 82682492 82683375 -69853884 + RLTR13D6 LTR ERVK 1 902 0 2 1215 423 0 0 0 chr5 82683453 82683500 -69853759 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1215 23 0 0 0 chr5 82684055 82684078 -69853181 + AT_rich Low_complexity Low_complexity 1 23 0 2 1215 29 60 0 0 chr5 82684546 82684596 -69852663 + AT_rich Low_complexity Low_complexity 1 50 0 2 1215 21 36 0 0 chr5 82684924 82684952 -69852307 + AT_rich Low_complexity Low_complexity 1 28 0 2 1215 5292 126 5 1 chr5 82685061 82685897 -69851362 - L1_Mm LINE L1 -1374 4509 3671 2 1215 2643 171 27 75 chr5 82685890 82687111 -69850148 - L1VL4 LINE L1 -2434 1383 164 2 1215 269 259 120 8 chr5 82687192 82687309 -69849950 - Lx7 LINE L1 -1963 5733 5604 2 1215 1219 240 105 15 chr5 82687311 82687654 -69849605 - ORR1D1 LTR MaLR 0 374 1 2 1215 921 224 57 133 chr5 82687654 82687969 -69849290 - ORR1D1-int LTR MaLR -6 1364 1074 2 1215 814 262 34 24 chr5 82688029 82688236 -69849023 - RMER15-int LTR ERVL -2867 2132 1924 2 1215 638 257 137 34 chr5 82688259 82688388 -69848871 + RMER1C Other Other 1069 1226 -116 2 1215 279 93 0 0 chr5 82688388 82688431 -69848828 + (TTG)n Simple_repeat Simple_repeat 1 43 0 2 1215 638 257 137 34 chr5 82688431 82688535 -69848724 + RMER1C Other Other 1227 1326 -16 2 1215 507 95 0 0 chr5 82689007 82689081 -69848178 + (CAA)n Simple_repeat Simple_repeat 2 75 0 2 1215 280 290 25 20 chr5 82689959 82690057 -69847202 + B3 SINE B2 64 165 -33 2 1215 28 61 0 0 chr5 82691249 82691298 -69845961 + AT_rich Low_complexity Low_complexity 1 49 0 2 1215 24 32 0 0 chr5 82692401 82692432 -69844827 + AT_rich Low_complexity Low_complexity 1 31 0 2 1215 26 50 0 0 chr5 82692470 82692510 -69844749 + AT_rich Low_complexity Low_complexity 1 40 0 2 1215 30 27 0 0 chr5 82692996 82693033 -69844226 + AT_rich Low_complexity Low_complexity 1 37 0 2 1215 1544 218 54 17 chr5 82693231 82693535 -69843724 + ORR1B2 LTR MaLR 1 301 -66 2 1215 588 29 0 0 chr5 82693535 82693605 -69843654 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 2 1215 1544 218 54 17 chr5 82693605 82693654 -69843605 + ORR1B2 LTR MaLR 302 366 -1 2 1215 1687 251 109 22 chr5 82693698 82694301 -69842958 + Lx9 LINE L1 6989 7644 0 2 1215 1021 243 113 43 chr5 82694908 82695351 -69841908 + Lx9 LINE L1 7101 7574 -70 2 1215 432 212 10 39 chr5 82695476 82695579 -69841680 + Lx9 LINE L1 7125 7224 -420 2 1215 262 156 22 0 chr5 82695773 82695818 -69841441 + L1VL4 LINE L1 400 445 -5857 2 1215 17605 100 25 8 chr5 82695816 82698509 -69838750 + L1VL4 LINE L1 210 2951 -608 2 1215 237 33 0 0 chr5 82698509 82698539 -69838720 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2 1215 17605 89 25 9 chr5 82698539 82699136 -69838123 + L1VL4 LINE L1 2952 3558 -1 2 1215 24 0 0 0 chr5 82699136 82699160 -69838099 + AT_rich Low_complexity Low_complexity 1 24 0 2 1215 2596 312 49 39 chr5 82699167 82699846 -69837413 + Lx9 LINE L1 6383 7088 -556 2 1215 306 0 0 0 chr5 82699846 82699880 -69837379 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2 1215 2596 312 49 39 chr5 82699880 82700428 -69836831 + Lx9 LINE L1 7089 7621 -23 2 1215 223 178 0 0 chr5 82700698 82700743 -69836516 + T-rich Low_complexity Low_complexity 1 45 0 2 1215 25 31 0 0 chr5 82700876 82700908 -69836351 + AT_rich Low_complexity Low_complexity 1 32 0 2 151 29431 126 19 25 chr5 82700971 82707272 -69829987 + L1_Mus1 LINE L1 261 6534 -33 2 1216 6447 195 47 17 chr5 82707250 82708488 -69828771 + Lx5 LINE L1 4667 5946 -1104 2 1216 360 0 0 0 chr5 82708488 82708528 -69828731 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2 1216 6447 198 57 38 chr5 82708528 82709585 -69827674 + Lx5 LINE L1 5947 7042 -8 2 1216 376 271 138 23 chr5 82710250 82710424 -69826835 + MLT1A1 LTR MaLR 173 366 -42 2 1216 495 0 0 0 chr5 82710437 82710492 -69826767 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1216 261 0 0 0 chr5 82710492 82710520 -69826739 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1216 664 287 45 35 chr5 82710839 82711041 -69826218 + MTE2b LTR MaLR 2 205 -174 2 1216 21 0 0 0 chr5 82711050 82711071 -69826188 + AT_rich Low_complexity Low_complexity 1 21 0 2 1216 1343 167 4 20 chr5 82711071 82711321 -69825938 - Lx LINE L1 -3 6651 6406 2 1216 2711 152 178 7 chr5 82711322 82711872 -69825387 + L1_Mm LINE L1 4872 5515 -368 2 1216 1695 140 0 8 chr5 82712210 82712470 -69824789 - RLTR22_Mur LTR ERVK 0 1848 1591 2 1216 5350 107 19 11 chr5 82712680 82713503 -69823756 - RLTR22_Mur LTR ERVK -1018 830 1 2 1216 303 93 0 0 chr5 82713544 82713587 -69823672 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1216 207 0 0 0 chr5 82713690 82713713 -69823546 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1216 1297 193 154 12 chr5 82713758 82714089 -69823170 - ORR1C1 LTR MaLR 0 378 1 3 1216 727 239 62 54 chr5 82714103 82714439 -69822820 - L1M3 LINE L1 -2123 4017 3679 3 1216 432 267 34 25 chr5 82714489 82714608 -69822651 - ID_B1 SINE B4 0 224 105 3 1216 234 0 0 0 chr5 82715488 82715514 -69821745 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1216 322 303 50 0 chr5 82716535 82716634 -69820625 + MER82 DNA MER2_type 519 622 -31 3 1216 260 346 20 43 chr5 82717171 82717337 -69819922 + L2a LINE L2 3211 3425 -1 3 1216 530 98 12 0 chr5 82718960 82719042 -69818217 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 3 1216 618 335 43 29 chr5 82719280 82719489 -69817770 + B4 SINE B4 1 212 -80 3 1216 29 0 0 0 chr5 82719501 82719530 -69817729 + AT_rich Low_complexity Low_complexity 1 29 0 3 1216 420 55 0 0 chr5 82719570 82719625 -69817634 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1216 5026 171 32 27 chr5 82720541 82721540 -69815719 + Lx4A LINE L1 6055 7058 0 3 1216 1201 108 23 0 chr5 82721570 82721746 -69815513 + B2_Mm2 SINE B2 2 181 -14 3 1216 361 109 0 18 chr5 82721793 82721849 -69815410 + B2_Mm2 SINE B2 47 101 -94 3 1216 21 36 0 0 chr5 82721871 82721899 -69815360 + AT_rich Low_complexity Low_complexity 1 28 0 3 1216 192 302 82 36 chr5 82721916 82722026 -69815233 + MIRb SINE MIR 68 182 -86 3 1216 1646 93 0 95 chr5 82722456 82722730 -69814529 - L1_Mus2 LINE L1 0 6566 6319 3 1216 1352 84 0 0 chr5 82722730 82722908 -69814351 + L1_Mus2 LINE L1 6129 6306 -260 3 1216 389 273 112 38 chr5 82723343 82723503 -69813756 + B3A SINE B2 1 172 -26 3 1216 350 42 21 0 chr5 82724559 82724607 -69812652 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1216 2892 119 0 7 chr5 82724705 82725143 -69812116 + Lx2 LINE L1 6561 6995 -2 3 1216 495 33 0 0 chr5 82725392 82725453 -69811806 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1216 792 311 22 51 chr5 82725466 82725740 -69811519 - B4A SINE B4 -24 268 3 3 1216 22 56 0 0 chr5 82725814 82725850 -69811409 + AT_rich Low_complexity Low_complexity 1 36 0 3 1216 4715 181 60 13 chr5 82726147 82726715 -69810544 + Lx4B LINE L1 5401 6001 -1057 3 1216 3413 89 15 4 chr5 82726715 82727188 -69810071 + L1_Mus1 LINE L1 6090 6567 0 3 1216 4715 215 123 22 chr5 82727188 82728126 -69809133 + Lx4B LINE L1 6002 7050 -8 3 1216 1778 162 97 8 chr5 82728541 82728901 -69808358 - ORR1B1 LTR MaLR 0 394 3 3 1216 806 79 119 0 chr5 82728934 82729060 -69808199 + B1_Mm SINE Alu 7 147 0 3 1216 504 0 0 0 chr5 82729411 82729467 -69807792 + (CATA)n Simple_repeat Simple_repeat 2 57 0 3 1216 192 77 0 0 chr5 82729467 82729493 -69807766 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1216 308 336 15 7 chr5 82729636 82729771 -69807488 + Lx8 LINE L1 6759 6894 -579 3 1216 189 147 0 0 chr5 82730190 82730224 -69807035 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1216 40378 17 2 6 chr5 82730370 82736941 -69800318 - L1Md_A LINE L1 -13 6569 28 3 1216 407 275 72 7 chr5 82736972 82737111 -69800148 - L1MA7 LINE L1 -285 6006 5859 3 1216 2491 194 58 88 chr5 82737111 82737823 -69799436 + RMER6C LTR ERVK 1 690 0 3 1216 328 301 81 54 chr5 82737823 82737869 -69799390 - L1MB1 LINE L1 -331 5858 5816 3 1216 377 300 151 16 chr5 82737900 82738218 -69799041 - L1M4 LINE L1 -1347 4799 4439 3 1216 25 0 0 0 chr5 82738276 82738301 -69798958 + AT_rich Low_complexity Low_complexity 1 25 0 3 1216 216 97 0 0 chr5 82738439 82738470 -69798789 + (TTA)n Simple_repeat Simple_repeat 3 33 0 3 1216 626 171 258 74 chr5 82739310 82739500 -69797759 + URR1A DNA MER1_type 2 226 0 3 1216 22 0 0 0 chr5 82742682 82742704 -69794555 + AT_rich Low_complexity Low_complexity 1 22 0 3 1216 315 337 0 65 chr5 82743315 82743346 -69793913 - MIR SINE MIR -113 149 119 3 1216 861 143 37 42 chr5 82743346 82743536 -69793723 + Lx3C LINE L1 6786 6974 -2 3 1216 315 347 0 65 chr5 82743536 82743645 -69793614 - MIR SINE MIR -143 125 25 3 1216 22 0 0 0 chr5 82743645 82743667 -69793592 + AT_rich Low_complexity Low_complexity 1 22 0 3 1216 217 303 13 132 chr5 82743685 82743761 -69793498 - ID4_ SINE ID -14 69 3 3 1216 5830 117 11 7 chr5 82745497 82746834 -69790425 - L1_Mus4 LINE L1 -2 6564 5256 3 1216 383 365 47 52 chr5 82747283 82747474 -69789785 - B3 SINE B2 -21 195 6 3 1216 565 344 42 61 chr5 82747615 82747974 -69789285 - LTR16B1 LTR ERVL -124 356 5 3 1216 231 186 0 0 chr5 82748921 82748964 -69788295 + B4A SINE B4 1 43 -249 3 1216 449 312 243 19 chr5 82748979 82749296 -69787963 + MTD LTR MaLR 18 405 -14 3 1216 188 287 8 0 chr5 82750479 82750608 -69786651 + (CA)n Simple_repeat Simple_repeat 2 131 0 3 1216 353 85 0 0 chr5 82750608 82750655 -69786604 + HAL1-3A_ME LINE L1 1976 2022 -836 3 1216 264 328 0 0 chr5 82751187 82751254 -69786005 + ID2 SINE ID 2 68 -15 3 1216 375 23 0 0 chr5 82751256 82751300 -69785959 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1216 297 210 12 12 chr5 82751587 82751669 -69785590 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1216 826 183 5 32 chr5 82753151 82753337 -69783922 + Lx3C LINE L1 6796 6976 0 3 1216 405 0 0 0 chr5 82754218 82754263 -69782996 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1216 23 33 0 0 chr5 82754403 82754433 -69782826 + AT_rich Low_complexity Low_complexity 1 30 0 3 1216 1202 36 61 0 chr5 82754586 82754751 -69782508 + L1Md_F3 LINE L1 6409 6583 -1 3 1216 1066 153 11 5 chr5 82754763 82754954 -69782305 + B2_Mm2 SINE B2 2 193 -2 3 1216 347 337 34 17 chr5 82755201 82755379 -69781880 - L1M5 LINE L1 -1320 4826 4646 3 1216 858 257 50 0 chr5 82756003 82756326 -69780933 + Lx9 LINE L1 7305 7643 -1 3 1216 1128 76 0 0 chr5 82757359 82757504 -69779755 + B1_Mm SINE Alu 1 145 -2 3 1216 203 55 0 53 chr5 82757505 82757543 -69779716 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3 1216 219 23 44 44 chr5 82757585 82757630 -69779629 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 3 1216 558 143 0 0 chr5 82757657 82757762 -69779497 + (TG)n Simple_repeat Simple_repeat 1 105 0 3 1216 762 372 18 3 chr5 82758503 82758786 -69778473 + B4A SINE B4 6 292 0 3 1216 219 36 0 0 chr5 82760261 82760289 -69776970 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1216 23 0 0 0 chr5 82760601 82760624 -69776635 + AT_rich Low_complexity Low_complexity 1 23 0 3 1216 180 158 0 0 chr5 82761604 82761642 -69775617 + T-rich Low_complexity Low_complexity 1 38 0 3 1216 207 100 0 0 chr5 82761664 82761694 -69775565 + (TTG)n Simple_repeat Simple_repeat 2 31 0 3 1216 405 0 0 0 chr5 82761714 82761759 -69775500 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1216 617 250 8 8 chr5 82761761 82761878 -69775381 - B1_Mur3 SINE Alu -31 118 2 3 1216 1383 94 0 0 chr5 82762478 82762670 -69774589 + L1_Mm LINE L1 5051 5242 -641 3 1216 242 62 0 0 chr5 82762680 82762712 -69774547 + L1_Mm LINE L1 5212 5243 -640 3 1216 1908 97 16 60 chr5 82762722 82763040 -69774219 + L1Md_F2 LINE L1 6267 6570 -12 3 1216 29 47 0 0 chr5 82763043 82763086 -69774173 + AT_rich Low_complexity Low_complexity 1 43 0 3 1216 969 236 12 35 chr5 82763095 82763375 -69773884 + Lx3C LINE L1 6637 6889 -108 3 1216 24 53 0 0 chr5 82763388 82763426 -69773833 + AT_rich Low_complexity Low_complexity 1 38 0 3 1216 289 305 0 28 chr5 82763566 82763674 -69773585 - MLT1A LTR MaLR -23 351 247 3 1216 234 0 0 0 chr5 82763674 82763700 -69773559 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1216 2069 224 50 58 chr5 82763845 82764353 -69772906 + RMER19C LTR ERVK 1 569 -42 3 1216 1505 83 0 0 chr5 82764353 82764558 -69772701 + L1_Mus1 LINE L1 6363 6567 0 3 1216 2069 223 52 58 chr5 82764558 82764602 -69772657 + RMER19C LTR ERVK 570 610 -1 3 1216 431 267 60 15 chr5 82765730 82765863 -69771396 + Lx9 LINE L1 7054 7192 -452 3 1216 786 277 39 75 chr5 82766758 82767223 -69770036 + Lx9 LINE L1 7196 7643 -1 3 1216 231 36 0 0 chr5 82768777 82768805 -69768454 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1216 1005 38 0 0 chr5 82768805 82768936 -69768323 - B1_Mm SINE Alu 0 147 17 3 1216 977 195 71 5 chr5 82769085 82769296 -69767963 + URR1B DNA MER1_type 1 225 0 3 1216 256 272 54 75 chr5 82769565 82769712 -69767547 - ORR1D2 LTR MaLR -226 144 1 3 1216 315 0 0 0 chr5 82769984 82770019 -69767240 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1216 320 242 7 20 chr5 82770468 82770570 -69766689 + Lx7 LINE L1 7605 7687 -9 3 1216 24 0 0 0 chr5 82771174 82771198 -69766061 + AT_rich Low_complexity Low_complexity 1 24 0 3 1216 22 0 0 0 chr5 82771304 82771326 -69765933 + AT_rich Low_complexity Low_complexity 1 22 0 3 1216 255 326 46 92 chr5 82771682 82771834 -69765425 + B1F SINE Alu 4 148 -1 3 1216 378 0 0 0 chr5 82772335 82772377 -69764882 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1216 257 244 32 32 chr5 82772728 82772821 -69764438 - L1MA7 LINE L1 -26 6265 6173 3 1216 429 304 101 30 chr5 82772856 82773093 -69764166 - L1MA7 LINE L1 -257 6034 5781 3 1216 504 350 12 12 chr5 82773118 82773280 -69763979 + RSINE1 SINE B4 4 165 0 3 1216 392 380 15 0 chr5 82773427 82773564 -69763695 - B1F2 SINE Alu -10 139 1 3 1216 246 314 144 0 chr5 82773652 82773770 -69763489 - B1F2 SINE Alu -13 136 2 3 1216 318 167 0 0 chr5 82774616 82774676 -69762583 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1216 21 57 0 0 chr5 82775156 82775191 -69762068 + AT_rich Low_complexity Low_complexity 1 35 0 3 1216 327 306 83 9 chr5 82775207 82775316 -69761943 - RSINE1 SINE B4 -47 118 2 3 1216 180 0 0 0 chr5 82777394 82777414 -69759845 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 1216 211 220 0 20 chr5 82778532 82778583 -69758676 + CT-rich Low_complexity Low_complexity 4 53 0 4 1216 356 336 9 17 chr5 82779919 82780034 -69757225 - Tigger5 DNA MER2_type -2215 191 78 4 1216 26 0 0 0 chr5 82780808 82780834 -69756425 + AT_rich Low_complexity Low_complexity 1 26 0 4 1216 277 320 6 75 chr5 82781552 82781711 -69755548 - Lx9 LINE L1 -357 7287 7140 4 1216 486 279 39 0 chr5 82781718 82781872 -69755387 + Lx9 LINE L1 7316 7475 -169 4 1216 980 266 35 66 chr5 82782045 82782468 -69754791 + MT2B LTR ERVL 1 536 -65 4 1216 459 0 0 0 chr5 82782469 82782520 -69754739 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1216 238 108 0 84 chr5 82782522 82782593 -69754666 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 4 1216 519 173 0 0 chr5 82782838 82782977 -69754282 + CT-rich Low_complexity Low_complexity 2 140 0 4 1216 347 262 53 45 chr5 82783270 82783402 -69753857 - MLT1E1A LTR MaLR -366 314 182 4 1216 252 59 0 0 chr5 82784006 82784040 -69753219 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1216 504 234 65 0 chr5 82784246 82784370 -69752889 + B1_Mur1 SINE Alu 17 148 -1 4 1216 417 167 0 0 chr5 82784635 82784713 -69752546 - Lx9 LINE L1 -166 7478 7401 4 1216 432 139 0 0 chr5 82785033 82785112 -69752147 + (CA)n Simple_repeat Simple_repeat 2 80 0 4 1216 2097 239 108 11 chr5 82786314 82786834 -69750425 - RMER15 LTR ERVL -5 570 1 4 1216 23 78 0 0 chr5 82787015 82787066 -69750193 + AT_rich Low_complexity Low_complexity 1 51 0 4 1216 740 171 12 12 chr5 82787074 82787234 -69750025 + Lx2A1 LINE L1 6827 6986 -22 4 1216 3323 32 46 5 chr5 82787264 82787678 -69749581 - L1Md_F3 LINE L1 -1 6583 6153 4 1216 2922 59 0 5 chr5 82787678 82788054 -69749205 + L1_Mm LINE L1 4885 5258 -625 4 1216 277 339 72 14 chr5 82788084 82788305 -69748954 + L1MA4A LINE L1 5665 5898 -405 4 1216 593 322 68 32 chr5 82788307 82788863 -69748396 - L1M2 LINE L1 -933 5210 4635 4 1216 419 283 58 8 chr5 82789023 82789144 -69748115 + MTE2a LTR MaLR 1 127 -252 4 1216 1898 157 273 14 chr5 82790669 82791186 -69746073 + RMER6C LTR ERVK 3 653 -37 4 1216 668 301 0 0 chr5 82791188 82791361 -69745898 + RMER1B Other Other 554 726 -340 4 1216 509 286 11 45 chr5 82791362 82791538 -69745721 - RLTR11B LTR ERVK 0 453 284 4 1216 404 261 46 80 chr5 82791656 82791831 -69745428 - RLTR11B LTR ERVK -191 262 94 4 1216 724 202 11 12 chr5 82791846 82792008 -69745251 + RMER1B Other Other 722 862 -204 4 1216 199 117 67 0 chr5 82792008 82792068 -69745191 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 4 1216 597 64 0 0 chr5 82792068 82792146 -69745113 + (TCTG)n Simple_repeat Simple_repeat 3 80 0 4 1216 1243 73 6 11 chr5 82792156 82792337 -69744922 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 4 1216 23 0 0 0 chr5 82793849 82793872 -69743387 + AT_rich Low_complexity Low_complexity 1 23 0 4 1216 22 56 0 0 chr5 82794157 82794193 -69743066 + AT_rich Low_complexity Low_complexity 1 36 0 4 1216 582 344 92 8 chr5 82794397 82794658 -69742601 - B4A SINE B4 -6 286 4 4 1216 25 31 0 0 chr5 82794900 82794932 -69742327 + AT_rich Low_complexity Low_complexity 1 32 0 4 1216 597 94 0 0 chr5 82795127 82795212 -69742047 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 4 1216 6958 178 37 5 chr5 82795219 82795237 -69742022 - Lx3C LINE L1 0 6976 6962 4 1216 225 65 0 0 chr5 82795237 82795268 -69741991 + (CTTA)n Simple_repeat Simple_repeat 1 31 0 4 1216 6958 178 37 5 chr5 82795268 82796564 -69740695 - Lx3C LINE L1 -15 6961 5620 4 1216 2725 123 5 20 chr5 82796557 82796997 -69740262 + L1_Mur1 LINE L1 4683 5115 -771 4 1216 746 293 35 39 chr5 82797189 82797448 -69739811 - MTD LTR MaLR -161 258 1 4 1216 2825 170 50 46 chr5 82797591 82798557 -69738702 + L1_Mus3 LINE L1 5693 6638 0 4 1216 23 54 0 0 chr5 82798799 82798836 -69738423 + AT_rich Low_complexity Low_complexity 1 37 0 4 1216 7316 144 7 26 chr5 82799427 82800676 -69736583 - Lx2 LINE L1 0 6997 5772 4 1216 26 0 0 0 chr5 82800790 82800816 -69736443 + AT_rich Low_complexity Low_complexity 1 26 0 4 1216 414 0 0 0 chr5 82800890 82800936 -69736323 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1216 694 299 191 20 chr5 82801565 82801975 -69735284 + Lx8 LINE L1 6197 6676 -797 4 1216 727 349 58 28 chr5 82802019 82802381 -69734878 + MTE2b LTR MaLR 1 373 -6 4 1216 231 287 42 21 chr5 82802387 82802483 -69734776 + MTE2b-int LTR MaLR 2 99 -1481 4 1216 277 229 82 24 chr5 82802492 82802577 -69734682 + MTE2b-int LTR MaLR 283 372 -1208 4 1216 697 300 122 23 chr5 82803106 82803451 -69733808 + MTE2a LTR MaLR 1 379 0 4 1216 666 261 40 15 chr5 82804175 82804377 -69732882 - B3 SINE B2 -5 211 5 4 1216 294 246 85 53 chr5 82804791 82804980 -69732279 - RMER17C LTR ERVK -138 272 78 4 1216 243 162 11 81 chr5 82804981 82805068 -69732191 + GA-rich Low_complexity Low_complexity 5 85 0 4 1216 225 94 0 0 chr5 82805087 82805119 -69732140 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1216 579 322 97 4 chr5 82805135 82805372 -69731887 - B4A SINE B4 -18 274 16 4 1216 1363 207 134 12 chr5 82805482 82805824 -69731435 - ORR1C2 LTR MaLR 0 384 1 4 1216 31 0 0 0 chr5 82806531 82806562 -69730697 + AT_rich Low_complexity Low_complexity 1 31 0 4 1216 557 324 24 10 chr5 82808144 82808350 -69728909 + B3 SINE B2 2 210 -6 4 1216 922 244 76 31 chr5 82808528 82808816 -69728443 - Lx9 LINE L1 -160 7484 7184 4 1216 468 288 21 28 chr5 82809660 82809803 -69727456 - RMER15-int LTR ERVL -246 4753 4612 4 1216 342 232 73 0 chr5 82809809 82809891 -69727368 - MTEb LTR MaLR -2 377 290 4 1216 21 57 0 0 chr5 82809924 82809959 -69727300 + AT_rich Low_complexity Low_complexity 1 35 0 4 1216 35 24 0 0 chr5 82810465 82810507 -69726752 + AT_rich Low_complexity Low_complexity 1 42 0 4 1216 304 337 88 50 chr5 82810693 82811093 -69726166 + MER63D DNA AcHobo 27 441 -620 4 1216 285 305 8 71 chr5 82811055 82811066 -69726193 + MT2B LTR ERVL 156 200 -401 4 1216 471 208 10 0 chr5 82811066 82811167 -69726092 + B1_Mus1 SINE Alu 3 104 -44 4 1216 285 305 8 71 chr5 82811167 82811182 -69726077 + MT2B LTR ERVL 201 274 -327 4 1216 313 340 29 0 chr5 82812553 82812656 -69724603 + MLT1L LTR MaLR 415 520 -90 4 1216 471 35 0 0 chr5 82813953 82814010 -69723249 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 1216 334 347 54 54 chr5 82814175 82814229 -69723030 - MLT1B LTR MaLR -9 458 412 4 1216 5872 30 0 0 chr5 82814229 82814918 -69722341 - L1Md_A LINE L1 0 6582 5894 4 1216 346 335 34 80 chr5 82814918 82815266 -69721993 - MLT1B LTR MaLR -56 411 28 4 1216 24 0 0 0 chr5 82815393 82815417 -69721842 + AT_rich Low_complexity Low_complexity 1 24 0 4 1216 186 43 0 0 chr5 82815630 82815653 -69721606 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1216 201 154 0 0 chr5 82816637 82816676 -69720583 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1216 6107 129 21 5 chr5 82817497 82818440 -69718819 - RMER17B LTR ERVK 0 958 1 4 1216 223 67 67 0 chr5 82818734 82818779 -69718480 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 4 1216 27 29 0 0 chr5 82818922 82818956 -69718303 + AT_rich Low_complexity Low_complexity 1 34 0 4 1216 735 12 0 0 chr5 82819058 82819142 -69718117 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 4 1216 213 231 0 0 chr5 82820360 82820412 -69716847 + T-rich Low_complexity Low_complexity 1 52 0 4 1216 1622 130 32 0 chr5 82820720 82820973 -69716286 + L1_Mm LINE L1 5550 5810 -73 4 1216 6135 77 24 4 chr5 82820963 82821932 -69715327 + L1Md_F2 LINE L1 391 1386 -4497 4 1216 4943 71 0 0 chr5 82821930 82822566 -69714693 + L1Md_F2 LINE L1 4951 5586 -297 4 1216 7386 78 3 9 chr5 82822567 82823564 -69713695 + L1Md_F2 LINE L1 5588 6578 -4 4 1216 247 233 80 65 chr5 82823643 82823696 -69713563 + RMER17D LTR ERVK 233 283 -606 4 1216 390 108 0 0 chr5 82823696 82823761 -69713498 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 4 1216 247 233 80 65 chr5 82823761 82823845 -69713414 + RMER17D LTR ERVK 284 372 -517 4 1216 443 296 122 65 chr5 82824651 82825219 -69712040 - L1MC1 LINE L1 -10 6323 5724 4 1216 255 140 0 0 chr5 82826433 82826483 -69710776 + (CCAA)n Simple_repeat Simple_repeat 2 51 0 4 1216 520 358 70 42 chr5 82826919 82827350 -69709909 - Helitron3Na_Mam RC Helitron -28 458 16 4 1216 297 0 0 0 chr5 82827435 82827468 -69709791 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 1216 1804 147 16 9 chr5 82828221 82828538 -69708721 - Lx4A LINE L1 -3 7055 6737 4 1216 409 165 0 60 chr5 82828540 82828624 -69708635 + L1_Mur2 LINE L1 4960 5038 -839 4 1216 372 59 0 0 chr5 82828924 82828975 -69708284 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1216 333 258 43 0 chr5 82829054 82829147 -69708112 - RSINE1 SINE B4 -43 122 26 4 1216 233 119 24 0 chr5 82829716 82829758 -69707501 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1216 692 23 12 0 chr5 82829867 82829953 -69707306 + (TC)n Simple_repeat Simple_repeat 2 88 0 4 1216 201 39 0 0 chr5 82829953 82829978 -69707281 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1216 388 250 64 9 chr5 82830091 82830200 -69707059 - ERVL-B4-int LTR ERVL -2248 3466 3352 4 1216 336 380 49 35 chr5 82831122 82831608 -69705651 - ERVL-B4-int LTR ERVL -3445 2222 1730 4 1216 206 200 0 0 chr5 82834624 82834659 -69702600 - MIRm SINE MIR -155 121 87 4 1216 447 19 0 0 chr5 82835980 82836032 -69701227 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1216 414 0 0 0 chr5 82836032 82836077 -69701182 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1216 294 268 73 73 chr5 82836086 82836223 -69701036 - MLT1A0 LTR MaLR -15 350 214 4 1216 344 321 82 0 chr5 82836424 82836558 -69700701 + MTE2b LTR MaLR 6 150 -229 4 1216 790 292 64 11 chr5 82836567 82836834 -69700425 - RMER15 LTR ERVL -16 559 279 4 1216 3207 46 0 0 chr5 82836974 82837365 -69699894 - L1Md_T LINE L1 -1 6581 6191 4 18 7603 15 0 2 chr5 82837365 82838253 -69699006 + L1_Mm LINE L1 3961 4846 -1037 4 1217 349 96 10 41 chr5 82838319 82838417 -69698842 + (TTTTTG)n Simple_repeat Simple_repeat 2 96 0 4 1217 1079 56 7 14 chr5 82838422 82838566 -69698693 - B1_Mm SINE Alu -2 145 3 4 1217 478 315 8 0 chr5 82839338 82839468 -69697791 + B1F2 SINE Alu 12 142 -7 4 1217 551 274 24 0 chr5 82839473 82839597 -69697662 + B3A SINE B2 1 127 -71 5 1217 720 61 26 0 chr5 82839717 82839831 -69697428 - L1Md_F3 LINE L1 -1 6583 6467 5 1217 791 60 0 0 chr5 82839831 82839931 -69697328 + L1_Mm LINE L1 5471 5570 -313 5 1217 7152 33 0 1 chr5 82839927 82840776 -69696483 + L1_Mm LINE L1 4801 5648 -235 5 1217 22 0 0 0 chr5 82840777 82840799 -69696460 + AT_rich Low_complexity Low_complexity 1 22 0 5 1217 22 35 0 0 chr5 82841151 82841180 -69696079 + AT_rich Low_complexity Low_complexity 1 29 0 5 1217 40312 16 0 6 chr5 82841180 82847334 -69689925 - L1Md_A LINE L1 -2 6580 468 5 1217 1365 233 27 37 chr5 82847533 82847907 -69689352 - ORR1D1 LTR MaLR 0 374 5 5 1217 238 272 58 22 chr5 82849352 82849491 -69687768 - L1MA7 LINE L1 -21 6270 6127 5 1217 509 228 102 8 chr5 82851594 82851722 -69685537 + B1_Mur1 SINE Alu 2 141 -8 5 1217 1320 248 60 6 chr5 82851946 82852262 -69684997 + Lx5 LINE L1 6402 6734 -316 5 1217 281 260 50 0 chr5 82852268 82852368 -69684891 + Lx5 LINE L1 6943 7047 -3 5 1217 294 399 42 38 chr5 82852554 82852791 -69684468 - MTE2b LTR MaLR -141 238 1 5 1217 279 330 21 0 chr5 82853024 82853121 -69684138 - Lx9 LINE L1 -486 7158 7060 5 1217 234 326 132 11 chr5 82853138 82853327 -69683932 + Lx9 LINE L1 7216 7427 -217 5 1217 360 0 0 0 chr5 82853911 82853951 -69683308 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1217 2168 212 49 68 chr5 82854826 82855382 -69681877 - RMER15 LTR ERVL -2 573 29 5 1217 441 0 0 0 chr5 82855553 82855602 -69681657 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1217 31 0 0 0 chr5 82856995 82857026 -69680233 + AT_rich Low_complexity Low_complexity 1 31 0 5 1217 482 268 8 0 chr5 82857209 82857336 -69679923 - Lx7 LINE L1 -388 7308 7181 5 1217 658 282 5 0 chr5 82857337 82857525 -69679734 + Lx7 LINE L1 6924 7112 -584 5 1217 294 29 0 0 chr5 82859559 82859594 -69677665 + (CAT)n Simple_repeat Simple_repeat 1 35 0 5 1217 6001 128 21 6 chr5 82860121 82861073 -69676186 - Lx3A LINE L1 -9 6972 6007 5 1217 7633 149 30 10 chr5 82861073 82862801 -69674458 + Lx2 LINE L1 5237 6996 -1 5 1217 1494 109 67 28 chr5 82862805 82863059 -69674200 + Lx3A LINE L1 5741 6004 -977 5 1217 588 299 170 27 chr5 82863217 82863795 -69673464 + Lx7 LINE L1 5752 6409 -1064 5 1217 352 366 53 21 chr5 82864282 82864451 -69672808 + B3A SINE B2 1 175 -23 5 1217 816 55 0 0 chr5 82864451 82864561 -69672698 + (CA)n Simple_repeat Simple_repeat 2 111 0 5 1217 352 366 53 21 chr5 82864561 82864578 -69672681 + B3A SINE B2 176 192 -6 5 1217 487 318 36 10 chr5 82866549 82866743 -69670516 + MLT2B4 LTR ERVL 2 200 -356 5 1217 24 32 0 0 chr5 82866875 82866906 -69670353 + AT_rich Low_complexity Low_complexity 1 31 0 5 1217 926 117 55 7 chr5 82866913 82867059 -69670200 + B2_Mm2 SINE B2 1 153 -42 5 1217 282 232 215 39 chr5 82867865 82867995 -69669264 - Lx6 LINE L1 -667 6793 6641 5 1217 737 210 28 62 chr5 82867991 82868169 -69669090 + Lx6 LINE L1 7085 7256 -204 5 1217 698 163 121 0 chr5 82869333 82869474 -69667785 + MTC LTR MaLR 1 158 -263 5 1217 868 244 80 0 chr5 82869617 82869842 -69667417 + MTC LTR MaLR 179 421 0 5 1217 22 35 0 0 chr5 82870168 82870197 -69667062 + AT_rich Low_complexity Low_complexity 1 29 0 5 1217 446 381 20 14 chr5 82871028 82871305 -69665954 - Lx8 LINE L1 -146 7327 7039 5 1217 192 264 0 0 chr5 82872874 82872961 -69664298 + (TG)n Simple_repeat Simple_repeat 2 88 0 5 1217 8496 28 0 0 chr5 82874172 82875216 -69662043 - L1Md_A LINE L1 -1 6581 5538 5 1217 7045 69 5 0 chr5 82876435 82877324 -69659935 + RLTR13B1 LTR ERVK 1 893 0 5 1217 610 241 29 6 chr5 82877991 82878162 -69659097 - Lx7 LINE L1 -2 7694 7520 5 1217 5383 92 10 10 chr5 82878163 82879267 -69657992 + L1VL4 LINE L1 184 1289 -2270 5 1217 477 0 0 0 chr5 82879483 82879536 -69657723 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1217 528 30 0 0 chr5 82880058 82880124 -69657135 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1217 23 54 0 0 chr5 82880163 82880200 -69657059 + AT_rich Low_complexity Low_complexity 1 37 0 5 1217 1011 122 0 0 chr5 82880200 82880347 -69656912 - B1_Mm SINE Alu 0 147 1 5 1217 248 306 188 15 chr5 82881649 82881974 -69655285 - L1MC LINE L1 -2477 3669 3289 5 1217 980 87 58 0 chr5 82882059 82882197 -69655062 - B1_Mus1 SINE Alu 0 148 3 5 1217 320 76 0 51 chr5 82883024 82883083 -69654176 - L1_Mus1 LINE L1 -284 6283 6228 5 1217 38 51 0 0 chr5 82883319 82883378 -69653881 + AT_rich Low_complexity Low_complexity 1 59 0 5 1217 627 302 14 9 chr5 82883528 82883742 -69653517 - B3 SINE B2 -1 215 1 5 1217 408 55 0 0 chr5 82884403 82884458 -69652801 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1217 1397 285 16 16 chr5 82885490 82885864 -69651395 + Lx6 LINE L1 7028 7401 -59 5 1217 228 179 36 0 chr5 82887044 82887100 -69650159 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 5 1217 548 213 0 0 chr5 82887264 82887372 -69649887 + MTD LTR MaLR 13 120 -301 5 1217 742 260 14 50 chr5 82887386 82887513 -69649746 - B3 SINE B2 0 216 93 5 1217 865 286 116 18 chr5 82887513 82887848 -69649411 - ORR1D2 LTR MaLR -2 368 1 5 1217 742 260 14 50 chr5 82887848 82887939 -69649320 - B3 SINE B2 -124 92 6 5 1217 3211 47 3 0 chr5 82887945 82888329 -69648930 - IAPEY_LTR LTR ERVK 0 385 1 5 1217 616 279 37 0 chr5 82888333 82888494 -69648765 + MTD LTR MaLR 108 274 -145 5 1217 554 330 12 14 chr5 82888507 82888705 -69648554 - Lx8 LINE L1 -496 6977 6768 5 1217 459 35 0 0 chr5 82888900 82888957 -69648302 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1217 283 368 63 7 chr5 82888988 82889259 -69648000 + B4A SINE B4 3 288 -4 5 1217 256 258 65 43 chr5 82889329 82889422 -69647837 + Lx8 LINE L1 7047 7141 -332 5 1217 286 286 81 109 chr5 82889437 82889544 -69647715 + Lx8 LINE L1 7234 7335 -138 5 1217 204 67 0 0 chr5 82889544 82889574 -69647685 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 5 1217 286 286 81 109 chr5 82889574 82889713 -69647546 + Lx8 LINE L1 7336 7473 0 5 1217 765 336 86 47 chr5 82890383 82890964 -69646295 + Lx8 LINE L1 6836 7439 -34 5 1217 1527 296 16 28 chr5 82891934 82892506 -69644753 - Lx6 LINE L1 -26 7434 6489 5 1217 527 44 89 0 chr5 82892748 82892838 -69644421 + L1Md_F3 LINE L1 6487 6584 0 5 1217 210 91 0 0 chr5 82893053 82893086 -69644173 + (TTTTA)n Simple_repeat Simple_repeat 5 37 0 5 1217 181 236 33 98 chr5 82893758 82893819 -69643440 - L3 LINE CR1 -685 3804 3748 5 1217 1197 324 115 25 chr5 82894399 82895421 -69641838 - Lx8 LINE L1 -109 7364 6231 5 1217 436 296 42 78 chr5 82895761 82895952 -69641307 - B3A SINE B2 -14 184 1 5 1217 1117 146 28 23 chr5 82896500 82896717 -69640542 + Lx LINE L1 6437 6654 0 5 1217 613 61 1 0 chr5 82897579 82897668 -69639591 + B1_Mm SINE Alu 60 149 0 5 1217 206 213 40 0 chr5 82897966 82898041 -69639218 + (TATAA)n Simple_repeat Simple_repeat 2 79 0 5 1217 378 225 132 0 chr5 82898948 82899077 -69638182 - Lx9 LINE L1 -10 7634 7489 5 1217 2550 238 58 13 chr5 82899091 82899724 -69637535 - Lx9 LINE L1 -228 7416 6755 5 1217 663 37 0 0 chr5 82899781 82899863 -69637396 + (CA)n Simple_repeat Simple_repeat 1 82 0 5 1217 1928 54 12 0 chr5 82901732 82901972 -69635287 + L1_Mus1 LINE L1 6325 6567 0 5 1217 21 82 0 0 chr5 82902690 82902739 -69634520 + AT_rich Low_complexity Low_complexity 1 49 0 5 1217 1384 295 45 15 chr5 82902946 82903348 -69633911 - MTD LTR MaLR 0 419 6 5 1217 24 0 0 0 chr5 82903409 82903433 -69633826 + AT_rich Low_complexity Low_complexity 1 24 0 5 1217 478 277 0 18 chr5 82903823 82903937 -69633322 + ORR1D2 LTR MaLR 10 121 -249 5 1217 227 274 71 62 chr5 82904297 82904410 -69632849 + ORR1D2 LTR MaLR 122 235 -139 5 1217 567 210 86 14 chr5 82904465 82904605 -69632654 - RMER15 LTR ERVL -41 534 385 5 1217 209 186 0 0 chr5 82904636 82904679 -69632580 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1217 468 364 22 56 chr5 82904681 82905009 -69632250 - RMER15 LTR ERVL -199 376 27 5 1217 291 257 72 1 chr5 82905108 82905193 -69632066 - ORR1D1 LTR MaLR -276 98 9 5 1217 216 67 0 0 chr5 82905352 82905382 -69631877 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1217 27 73 0 0 chr5 82905488 82905543 -69631716 + AT_rich Low_complexity Low_complexity 1 55 0 5 1217 22 0 0 0 chr5 82905698 82905720 -69631539 + AT_rich Low_complexity Low_complexity 1 22 0 5 1217 28 86 0 0 chr5 82906033 82906103 -69631156 + AT_rich Low_complexity Low_complexity 1 70 0 5 1217 432 311 22 0 chr5 82906364 82906499 -69630760 + RMER1B Other Other 2 139 -927 5 1217 262 169 34 0 chr5 82906506 82906565 -69630694 + RMER1B Other Other 1001 1061 -5 5 1217 21 57 0 0 chr5 82906594 82906629 -69630630 + AT_rich Low_complexity Low_complexity 1 35 0 5 1217 1951 231 88 12 chr5 82906888 82907375 -69629884 - RLTR11A2 LTR ERVK -3 524 1 5 1217 212 222 83 0 chr5 82911128 82911200 -69626059 + (TTAA)n Simple_repeat Simple_repeat 4 81 0 5 1217 428 351 30 59 chr5 82911292 82911495 -69625764 - B3 SINE B2 0 216 20 5 1217 48 53 0 0 chr5 82911566 82911642 -69625617 + AT_rich Low_complexity Low_complexity 1 76 0 5 1217 545 267 129 15 chr5 82912025 82912301 -69624958 - Lx4B LINE L1 -4 7054 6650 5 1217 2394 133 52 126 chr5 82912343 82912632 -69624627 - L1_Mur2 LINE L1 -1019 4858 4622 5 1217 340 20 41 0 chr5 82912632 82912681 -69624578 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 5 1217 2394 133 52 126 chr5 82912681 82913000 -69624259 - L1_Mur2 LINE L1 -1256 4621 4295 5 1217 2313 148 5 30 chr5 82913000 82913433 -69623826 + L1_Mur2 LINE L1 4875 5296 -581 5 1217 2133 106 58 6 chr5 82913563 82913905 -69623354 - Lx3_Mus LINE L1 0 7009 6650 5 1217 301 366 37 7 chr5 82913960 82914095 -69623164 + MIR SINE MIR 60 198 -64 5 1217 2075 176 31 15 chr5 82914528 82914920 -69622339 + RMER6B LTR ERVK 1 398 -63 5 1217 6730 172 54 13 chr5 82914947 82916467 -69620792 + Lx4A LINE L1 5284 6886 -172 5 1217 306 0 0 0 chr5 82916483 82916517 -69620742 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 5 1217 258 150 17 0 chr5 82917458 82917518 -69619741 + Lx4A LINE L1 6996 7056 -2 5 1217 640 253 65 60 chr5 82917586 82917922 -69619337 - RLTR15 LTR ERVK -21 338 1 5 1217 1045 63 0 0 chr5 82918487 82918629 -69618630 - L1Md_A LINE L1 0 6582 6441 6 1217 524 333 0 12 chr5 82918805 82918978 -69618281 - Lx6 LINE L1 -17 7443 7273 6 1217 225 83 0 0 chr5 82919895 82919931 -69617328 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1217 22 0 0 0 chr5 82920895 82920917 -69616342 + AT_rich Low_complexity Low_complexity 1 22 0 6 1217 592 51 51 0 chr5 82921190 82921268 -69615991 + Lx3A LINE L1 5760 5841 -1168 6 1217 1190 41 7 0 chr5 82921271 82921417 -69615842 + B1_Mus2 SINE Alu 1 147 0 6 1217 363 98 0 0 chr5 82921417 82921478 -69615781 + (A)n Simple_repeat Simple_repeat 1 61 0 6 1217 4129 101 19 32 chr5 82921478 82922161 -69615098 + Lx3A LINE L1 5827 6500 -481 6 1217 5922 120 21 23 chr5 82922160 82923099 -69614160 + Lx LINE L1 5716 6652 -2 6 1217 492 18 0 0 chr5 82923639 82923696 -69613563 + (CA)n Simple_repeat Simple_repeat 1 57 0 6 1217 624 263 7 0 chr5 82923909 82924046 -69613213 - B1_Mur4 SINE Alu 0 150 13 6 1217 4148 80 0 12 chr5 82924054 82924639 -69612620 - L1Md_F2 LINE L1 0 6582 6005 6 1217 972 274 45 23 chr5 82924783 82925252 -69612007 + Lx7 LINE L1 5472 5919 -1777 6 1217 489 286 41 51 chr5 82925403 82925591 -69611668 + MT2A LTR ERVL 21 206 -327 6 1217 326 235 204 0 chr5 82925591 82925689 -69611570 + ORR1B2 LTR MaLR 3 120 -247 6 1217 933 121 0 0 chr5 82925689 82925821 -69611438 + ORR1B2 LTR MaLR 236 367 0 6 1217 4023 91 2 16 chr5 82925822 82926389 -69610870 + L1_Mus2 LINE L1 6007 6565 -1 6 1217 423 242 40 13 chr5 82926600 82926751 -69610508 + MERVL_2A-int LTR ERVL 220 374 -5387 6 1217 279 172 0 0 chr5 82927694 82927743 -69609516 + T-rich Low_complexity Low_complexity 16 64 0 6 1217 1029 89 14 7 chr5 82927743 82927890 -69609369 - B1_Mus1 SINE Alu 0 148 1 6 1217 279 172 0 0 chr5 82927890 82927904 -69609355 + T-rich Low_complexity Low_complexity 2 15 0 6 1217 510 261 33 127 chr5 82927956 82928263 -69608996 + L1MA7 LINE L1 6008 6285 -6 6 1217 225 65 0 0 chr5 82928403 82928434 -69608825 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1217 182 37 0 36 chr5 82929853 82929881 -69607378 + (TTAAA)n Simple_repeat Simple_repeat 1 27 0 6 1217 1134 266 58 58 chr5 82930591 82930636 -69606623 - MTD LTR MaLR -15 404 371 6 1217 387 0 0 0 chr5 82930636 82930679 -69606580 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 6 1217 1134 266 58 58 chr5 82930679 82931012 -69606247 - MTD LTR MaLR -49 370 26 6 1217 180 77 0 0 chr5 82931238 82931264 -69605995 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1217 1547 242 83 34 chr5 82933095 82933648 -69603611 + L1_Rod LINE L1 1756 2335 -3512 6 1217 197 65 32 0 chr5 82933721 82933752 -69603507 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 6 1217 4463 86 17 5 chr5 82933755 82934396 -69602863 - L1_Mus3 LINE L1 -5 6633 5985 6 1217 271 188 65 56 chr5 82934434 82934541 -69602718 + Lx9 LINE L1 7537 7644 0 6 1217 25 65 0 0 chr5 82934660 82934706 -69602553 + AT_rich Low_complexity Low_complexity 1 46 0 6 1217 21 0 0 0 chr5 82935416 82935437 -69601822 + AT_rich Low_complexity Low_complexity 1 21 0 6 1217 22766 183 25 14 chr5 82935437 82940624 -69596635 - Lx LINE L1 -9 6645 1401 6 1217 1084 72 0 0 chr5 82940624 82940763 -69596496 - B1_Mus1 SINE Alu -9 139 1 6 1217 22766 132 11 9 chr5 82940763 82941614 -69595645 - Lx LINE L1 -4486 1400 549 6 1217 352 330 122 5 chr5 82943115 82943304 -69593955 + MTE-int LTR MaLR 1311 1521 -59 6 1217 1951 159 14 25 chr5 82943625 82943993 -69593266 - RLTR9A LTR ERVK 0 368 5 6 1217 874 293 43 26 chr5 82944204 82944554 -69592705 - Lx8 LINE L1 -1027 6617 6172 6 1217 25 83 0 0 chr5 82944560 82944620 -69592639 + AT_rich Low_complexity Low_complexity 1 60 0 6 1217 4142 113 8 2 chr5 82945384 82945994 -69591265 + L1_Mus3 LINE L1 6025 6638 0 6 1217 1148 81 0 0 chr5 82946233 82946381 -69590878 - B1_Mus1 SINE Alu 0 148 1 6 1217 217 297 32 127 chr5 82946543 82946732 -69590527 + B2_Mm2 SINE B2 19 189 -6 6 1217 3926 50 2 2 chr5 82947604 82948226 -69589033 - L1Md_F3 LINE L1 0 6584 6085 6 1217 24 67 0 0 chr5 82949177 82949222 -69588037 + AT_rich Low_complexity Low_complexity 1 45 0 6 1217 445 264 81 16 chr5 82949433 82949556 -69587703 - B3A SINE B2 -57 141 11 6 1217 235 91 0 0 chr5 82949626 82949659 -69587600 - L1_Mur2 LINE L1 -1138 4739 4707 6 1217 2782 126 70 0 chr5 82949659 82950118 -69587141 + Lx2 LINE L1 6507 6997 0 6 1217 225 0 0 0 chr5 82950308 82950333 -69586926 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1217 324 120 0 0 chr5 82950593 82950643 -69586616 + (CAT)n Simple_repeat Simple_repeat 2 51 0 6 1217 350 21 21 0 chr5 82951118 82951165 -69586094 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 6 1217 1442 239 12 41 chr5 82951165 82951510 -69585749 - Lx5 LINE L1 -16 7034 6700 6 1217 399 41 0 0 chr5 82951515 82951564 -69585695 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1217 1527 77 19 0 chr5 82952737 82952946 -69584313 - L1_Mus2 LINE L1 -1 6565 6353 6 1217 2154 72 12 53 chr5 82952946 82953267 -69583992 + L1_Mus2 LINE L1 5841 6148 -418 6 1217 3557 184 102 32 chr5 82953256 82954123 -69583136 + L1_Mur3 LINE L1 4101 5027 -853 6 1217 3978 255 78 42 chr5 82954128 82954701 -69582558 + Lx6 LINE L1 6190 6747 -713 6 1217 1691 103 36 25 chr5 82954701 82954980 -69582279 - L1Md_F2 LINE L1 -1 6581 6300 6 1217 3978 255 78 42 chr5 82954980 82955622 -69581637 + Lx6 LINE L1 6748 7449 -11 6 1217 2492 144 11 34 chr5 82955776 82956221 -69581038 + Lx2A1 LINE L1 6572 7006 -2 6 1217 21 71 0 0 chr5 82956233 82956275 -69580984 + AT_rich Low_complexity Low_complexity 1 42 0 6 1217 3238 51 2 2 chr5 82956524 82956920 -69580339 - MTA_Mm LTR MaLR 0 396 1 6 1217 24 53 0 0 chr5 82957585 82957623 -69579636 + AT_rich Low_complexity Low_complexity 1 38 0 6 1217 366 244 0 22 chr5 82958455 82958593 -69578666 + (CATA)n Simple_repeat Simple_repeat 2 136 0 6 1217 1758 191 60 56 chr5 82958764 82959196 -69578063 - Lx4B LINE L1 -8 7050 6617 6 1217 448 274 0 42 chr5 82959197 82959315 -69577944 - ORR1B1 LTR MaLR -169 225 113 6 1217 10072 171 27 99 chr5 82959323 82959724 -69577535 - L1_Mur2 LINE L1 -965 4912 4571 6 1217 7755 39 32 5 chr5 82959724 82959931 -69577328 + L1Md_F3 LINE L1 5587 5793 -791 6 1217 1588 47 0 0 chr5 82959931 82960121 -69577138 + B2_Mm1t SINE B2 1 190 -3 6 1217 7755 39 32 5 chr5 82960121 82960885 -69576374 + L1Md_F3 LINE L1 5794 6584 0 6 1217 10072 171 27 99 chr5 82960885 82962014 -69575245 - L1_Mur2 LINE L1 -1307 4570 3468 6 1217 1040 109 0 7 chr5 82962014 82962161 -69575098 - B1_Mus2 SINE Alu -1 146 1 6 1217 10072 180 29 106 chr5 82962161 82963369 -69573890 - L1_Mur2 LINE L1 -2410 3473 2478 6 1217 213 65 0 0 chr5 82963369 82963400 -69573859 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1217 675 0 0 0 chr5 82963400 82963474 -69573785 + (GA)n Simple_repeat Simple_repeat 2 76 0 6 1217 5195 261 45 164 chr5 82963474 82964309 -69572950 - L1_Mur2 LINE L1 -3406 2477 1767 6 1217 477 0 0 0 chr5 82964319 82964372 -69572887 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1217 23 33 0 0 chr5 82964378 82964408 -69572851 + AT_rich Low_complexity Low_complexity 1 30 0 6 1217 1014 144 5 0 chr5 82964574 82964768 -69572491 + L1_Mur2 LINE L1 1559 1753 -4124 6 1217 15215 117 55 10 chr5 82964764 82967776 -69569483 - L1_Mur1 LINE L1 -2117 3769 214 6 152 38 75 0 0 chr5 82968566 82968646 -69568613 + AT_rich Low_complexity Low_complexity 1 80 0 6 1218 399 326 7 43 chr5 82968742 82968883 -69568376 - B4A SINE B4 0 292 157 6 1218 21 0 0 0 chr5 82970925 82970946 -69566313 + AT_rich Low_complexity Low_complexity 1 21 0 6 1218 30 45 0 0 chr5 82971165 82971209 -69566050 + AT_rich Low_complexity Low_complexity 1 44 0 6 1218 759 137 0 0 chr5 82971345 82971469 -69565790 + (TTCC)n Simple_repeat Simple_repeat 3 126 0 6 1218 203 213 21 0 chr5 82971841 82971888 -69565371 + (CAA)n Simple_repeat Simple_repeat 3 50 0 6 1218 2766 233 92 22 chr5 82972079 82972891 -69564368 - ORR1B1-int LTR MaLR -257 1252 384 6 1218 3012 146 172 2 chr5 82972891 82973448 -69563811 + Lx3A LINE L1 6303 6954 -27 6 1218 1462 247 37 32 chr5 82973448 82973466 -69563793 - ORR1B1-int LTR MaLR -1103 406 395 6 1218 369 0 0 0 chr5 82973466 82973507 -69563752 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 6 1218 1462 247 37 32 chr5 82973507 82973889 -69563370 - ORR1B1-int LTR MaLR -1115 394 4 6 1218 678 195 129 51 chr5 82973912 82974090 -69563169 - ORR1B1 LTR MaLR -202 192 1 6 1218 3653 269 61 78 chr5 82974691 82976108 -69561151 - Lx5 LINE L1 -1 7049 5657 6 1218 482 242 0 0 chr5 82976113 82976212 -69561047 - B1_Mus1 SINE Alu -41 107 9 6 1218 185 178 22 0 chr5 82976358 82976403 -69560856 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 6 1218 656 346 60 43 chr5 82976420 82976555 -69560704 - Lx8 LINE L1 -190 7283 7142 6 1218 2085 162 6 3 chr5 82976555 82976896 -69560363 + ORR1A1 LTR MaLR 1 342 -4 6 1218 656 346 60 43 chr5 82976896 82976978 -69560281 - Lx8 LINE L1 -332 7141 7061 6 1218 447 68 0 0 chr5 82976978 82977037 -69560222 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 6 1218 1906 101 7 10 chr5 82977039 82977330 -69559929 + L1_Mus3 LINE L1 6348 6637 -1 6 1218 656 346 60 43 chr5 82977330 82977506 -69559753 - Lx8 LINE L1 -413 7060 6882 6 1218 435 19 0 0 chr5 82978190 82978242 -69559017 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1218 315 351 80 11 chr5 82978580 82978756 -69558503 - MLT1B LTR MaLR 0 467 280 6 1218 406 332 24 19 chr5 82978787 82979016 -69558243 - MLT1B LTR MaLR -229 238 3 6 1218 26 0 0 0 chr5 82979236 82979262 -69557997 + AT_rich Low_complexity Low_complexity 1 26 0 6 1218 226 215 142 53 chr5 82979262 82979375 -69557884 - Lx8 LINE L1 -2 7471 7349 6 1218 312 314 21 42 chr5 82979398 82979541 -69557718 - Lx7 LINE L1 -366 7330 7191 6 1218 829 284 91 25 chr5 82979595 82979992 -69557267 - Lx7 LINE L1 -621 7075 6653 6 1218 969 272 32 36 chr5 82980102 82980411 -69556848 - MTD-int LTR MaLR -806 452 145 6 1218 7089 73 33 4 chr5 82980422 82981675 -69555584 - L1Md_F2 LINE L1 -1 6581 5302 6 1218 279 0 0 0 chr5 82981682 82981713 -69555546 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1218 253 296 25 0 chr5 82981724 82981805 -69555454 - MTD-int LTR MaLR -1174 84 2 6 1218 1384 296 22 10 chr5 82981808 82982208 -69555051 - MTD LTR MaLR -2 417 13 6 1218 270 0 0 0 chr5 82982227 82982257 -69555002 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1218 25 51 0 0 chr5 82982348 82982387 -69554872 + AT_rich Low_complexity Low_complexity 1 39 0 6 1218 25085 90 9 3 chr5 82982612 82986176 -69551083 + L1_Mm LINE L1 1948 5531 -352 6 1218 233 274 0 14 chr5 82986272 82986346 -69550913 + (TAG)n Simple_repeat Simple_repeat 2 74 0 6 1218 571 281 15 7 chr5 82986365 82986501 -69550758 - RSINE1 SINE B4 -26 139 3 6 1218 21 0 0 0 chr5 82986679 82986700 -69550559 + AT_rich Low_complexity Low_complexity 1 21 0 7 1218 25 75 0 0 chr5 82986876 82986929 -69550330 + AT_rich Low_complexity Low_complexity 1 53 0 7 1218 1737 113 0 29 chr5 82987011 82987292 -69549967 - L1Md_F2 LINE L1 -1 6581 6309 7 1218 838 115 0 0 chr5 82987292 82987405 -69549854 - L1_Mm LINE L1 -250 5633 5521 7 1218 371 134 73 0 chr5 82988775 82988857 -69548402 - Lx2 LINE L1 0 6997 6910 7 1218 830 306 33 111 chr5 82989010 82989378 -69547881 - MTE2a LTR MaLR -40 339 1 7 1218 3276 212 26 21 chr5 82989575 82990292 -69546967 - Lx2B LINE L1 -7 6993 6273 7 1218 33 56 0 0 chr5 82990475 82990529 -69546730 + AT_rich Low_complexity Low_complexity 1 54 0 7 1218 185 86 0 54 chr5 82990699 82990736 -69546523 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 7 1218 1755 189 36 6 chr5 82990896 82991226 -69546033 - ORR1B1 LTR MaLR -8 386 47 7 1218 744 280 10 58 chr5 82991289 82991494 -69545765 - ORR1C2 LTR MaLR -173 211 17 7 1218 441 81 0 0 chr5 82992092 82992154 -69545105 + (TA)n Simple_repeat Simple_repeat 1 62 0 7 1218 1072 185 112 3 chr5 82992856 82993091 -69544168 + ORR1C2 LTR MaLR 39 313 -71 7 1218 5964 144 70 58 chr5 82993091 82993970 -69543289 + RMER17C-int LTR ERVK 1649 2578 -660 7 1218 264 208 0 36 chr5 82993970 82994025 -69543234 - LSU-rRNA_Hsa rRNA rRNA -785 4250 4198 7 1218 5964 144 70 58 chr5 82994025 82994325 -69542934 + RMER17C-int LTR ERVK 2579 2897 -341 7 1218 723 228 83 26 chr5 82994344 82994373 -69542886 + RMER17C LTR ERVK 166 205 -205 7 1218 660 74 0 0 chr5 82994373 82994468 -69542791 + (TC)n Simple_repeat Simple_repeat 2 96 0 7 1218 723 228 83 26 chr5 82994468 82994668 -69542591 + RMER17C LTR ERVK 206 408 -2 7 1218 3103 72 33 0 chr5 82994683 82995102 -69542157 - L1_Mus3 LINE L1 0 6638 6206 7 1218 1004 110 0 0 chr5 82995114 82995260 -69541999 + B1_Mus1 SINE Alu 2 147 -1 7 1218 963 144 0 0 chr5 82995261 82995428 -69541831 + (A)n Simple_repeat Simple_repeat 1 167 0 7 1218 285 157 20 0 chr5 82995428 82995479 -69541780 + ORR1C2 LTR MaLR 330 381 -3 7 1218 259 304 0 35 chr5 82995496 82995612 -69541647 + Lx9 LINE L1 7517 7628 -16 7 1218 1183 243 80 23 chr5 82995764 82996113 -69541146 + Lx2B LINE L1 6630 6998 -2 7 1218 2454 286 51 14 chr5 82996739 82996835 -69540424 - RMER1B Other Other -14 1052 931 7 1218 261 0 0 0 chr5 82996835 82996864 -69540395 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1218 549 0 0 0 chr5 82996864 82996924 -69540335 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1218 2840 227 6 12 chr5 82996924 82997319 -69539940 - RMER1A Other Other -136 930 473 7 1218 1480 164 177 128 chr5 82997319 82997850 -69539409 + RLTR31B_Mm LTR ERVK 1 557 0 7 1218 2840 227 5 12 chr5 82997850 82998020 -69539239 - RMER1A Other Other -558 472 302 7 1218 1079 325 19 37 chr5 82998053 82998588 -69538671 - RMER1B Other Other -616 450 9 7 1218 533 56 14 14 chr5 82999017 82999090 -69538169 - L1_Mus2 LINE L1 -188 6378 6306 7 1218 1409 77 0 10 chr5 82999090 82999288 -69537971 + L1_Mus2 LINE L1 6371 6566 0 7 1218 1497 87 0 10 chr5 82999791 83000000 -69537259 + L1_Mus1 LINE L1 6199 6405 -162 7 1218 1111 108 0 12 chr5 83000000 83000169 -69537090 + L1Md_F2 LINE L1 6412 6578 -4 1 1218 23 33 0 0 chr5 83000176 83000206 -69537053 + AT_rich Low_complexity Low_complexity 1 30 0 2 1218 239 286 14 0 chr5 83000409 83000479 -69536780 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1218 1382 254 17 17 chr5 83000874 83001235 -69536024 + Lx6 LINE L1 6315 6675 -785 4 1218 2293 279 42 5 chr5 83001246 83001869 -69535390 + Lx6 LINE L1 6791 7436 -24 4 1218 186 50 0 70 chr5 83002224 83002267 -69534992 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1218 944 113 70 0 chr5 83003375 83003517 -69533742 - L1_Mus1 LINE L1 -207 6360 6209 6 1218 1433 101 0 0 chr5 83003517 83003715 -69533544 + L1_Mus1 LINE L1 6370 6567 0 6 1218 4228 65 0 0 chr5 83003738 83004324 -69532935 + L1_Mm LINE L1 1221 1806 -4077 7 1218 584 237 30 0 chr5 83004324 83004459 -69532800 + Lx8 LINE L1 6380 6518 -955 8 1218 225 226 17 9 chr5 83005538 83005654 -69531605 + GA-rich Low_complexity Low_complexity 2 118 0 9 1218 836 340 29 37 chr5 83005664 83006180 -69531079 + Lx8 LINE L1 6960 7471 -2 8 1218 2722 279 92 28 chr5 83006301 83007238 -69530021 + RMER1A Other Other 24 1020 -10 1 1218 279 370 28 103 chr5 83007935 83008149 -69529110 + B3A SINE B2 1 198 0 1 1218 418 351 15 0 chr5 83008148 83008282 -69528977 + B1_Mur2 SINE Alu 1 136 -13 1 1218 6081 120 27 5 chr5 83008298 83010023 -69527236 + L1VL2 LINE L1 65 1836 -1779 1 1218 26 0 0 0 chr5 83010163 83010189 -69527070 + AT_rich Low_complexity Low_complexity 1 26 0 1 1218 408 311 102 0 chr5 83010383 83010579 -69526680 - B3 SINE B2 0 216 1 1 1218 709 265 25 20 chr5 83011312 83011512 -69525747 + B3 SINE B2 3 203 -13 1 1218 23 0 0 0 chr5 83011749 83011772 -69525487 + AT_rich Low_complexity Low_complexity 1 23 0 1 1218 258 139 81 27 chr5 83012195 83012269 -69524990 + Lx9 LINE L1 7457 7534 -110 1 1218 26 50 0 0 chr5 83012391 83012431 -69524828 + AT_rich Low_complexity Low_complexity 1 40 0 1 1218 1149 89 0 0 chr5 83013042 83013188 -69524071 - B1_Mus1 SINE Alu 0 148 3 2 1218 757 250 87 0 chr5 83013262 83013446 -69523813 + ORR1B2 LTR MaLR 160 359 -8 2 1218 704 252 139 0 chr5 83013450 83013647 -69523612 + ORR1B2-int LTR MaLR 1 225 -1284 2 1218 343 115 0 37 chr5 83013647 83013701 -69523558 - ORR1B1 LTR MaLR -3 391 340 2 1218 274 212 52 103 chr5 83013710 83013826 -69523433 - B2_Mm2 SINE B2 -1 194 85 2 1218 2042 212 18 7 chr5 83013826 83014272 -69522987 + Lx3C LINE L1 6046 6496 -480 2 1218 444 207 112 46 chr5 83014276 83014428 -69522831 + Lx3C LINE L1 6804 6965 -8 2 1218 318 26 0 0 chr5 83014431 83014470 -69522789 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2 1218 1511 259 25 42 chr5 83014470 83014873 -69522386 - ORR1A3-int LTR MaLR -1567 396 1 2 1218 8056 57 1 0 chr5 83014895 83015958 -69521301 - L1Md_F2 LINE L1 0 6582 5519 2 1218 370 256 6 49 chr5 83015974 83016056 -69521203 - L1_Rod LINE L1 -2532 3315 3239 2 1218 186 71 0 0 chr5 83016056 83016084 -69521175 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1218 370 256 6 49 chr5 83016084 83016165 -69521094 - L1_Rod LINE L1 -2609 3238 3159 2 1218 495 237 29 0 chr5 83016186 83016325 -69520934 + Lx9 LINE L1 7494 7636 -8 3 1218 216 0 0 0 chr5 83016494 83016518 -69520741 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1218 2963 106 7 2 chr5 83016690 83017125 -69520134 - L1_Mus2 LINE L1 -1 6565 6129 3 1218 10991 98 15 5 chr5 83017125 83019004 -69518255 + L1_Mus2 LINE L1 4206 6105 -461 3 1218 863 142 0 0 chr5 83019008 83019142 -69518117 + B1_Mus1 SINE Alu 15 148 0 3 1218 876 161 0 0 chr5 83019165 83019327 -69517932 + A-rich Low_complexity Low_complexity 5 166 0 3 1218 21 36 0 0 chr5 83020425 83020453 -69516806 + AT_rich Low_complexity Low_complexity 1 28 0 3 1218 229 323 106 64 chr5 83020821 83021056 -69516203 - MLT1E1 LTR MaLR -12 642 398 3 1218 339 348 75 33 chr5 83021456 83021670 -69515589 - MLT1E1-int LTR MaLR -191 1298 1076 3 1218 21017 154 47 4 chr5 83024159 83026486 -69510773 + L1Md_F2 LINE L1 396 2994 -2892 3 1218 292 22 0 43 chr5 83026486 83026533 -69510726 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 3 1218 21017 99 7 5 chr5 83026533 83029121 -69508138 + L1Md_F2 LINE L1 2995 5586 -297 3 1218 7320 85 0 4 chr5 83029122 83030102 -69507157 + L1Md_F2 LINE L1 5588 6563 -19 3 1218 536 131 182 28 chr5 83031182 83031238 -69506021 - Lx9 LINE L1 0 7644 7565 3 1218 351 65 0 0 chr5 83031238 83031284 -69505975 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1218 536 131 182 28 chr5 83031284 83031408 -69505851 - Lx9 LINE L1 -80 7564 7436 3 1218 1645 235 11 37 chr5 83031830 83032210 -69505049 - MTC LTR MaLR -2 419 50 4 1218 236 278 0 0 chr5 83032491 83032545 -69504714 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 4 1218 228 35 0 0 chr5 83033058 83033087 -69504172 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 1218 450 0 0 0 chr5 83033500 83033550 -69503709 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 4 1218 241 344 108 0 chr5 83033709 83033802 -69503457 - LTR40a LTR ERVL -77 442 340 4 1218 5655 34 0 0 chr5 83034047 83034717 -69502542 - L1Md_T LINE L1 -3 6579 5910 4 1218 414 0 0 0 chr5 83034970 83035016 -69502243 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 1218 665 176 37 25 chr5 83035854 83036017 -69501242 - Lx LINE L1 -13 6641 6477 4 1218 13605 187 140 105 chr5 83036036 83038222 -69499037 - L1VL4 LINE L1 -134 5752 3158 4 1218 6076 46 3 1 chr5 83038222 83038970 -69498289 - L1Md_F2 LINE L1 0 6582 5834 5 1218 13605 187 140 105 chr5 83038970 83039934 -69497325 - L1VL4 LINE L1 -2729 3157 2438 4 1218 3269 43 2 0 chr5 83039934 83040331 -69496928 + L1Md_T LINE L1 6184 6581 -1 5 1218 13605 161 86 64 chr5 83040331 83042213 -69495046 - L1VL4 LINE L1 -3449 2437 562 4 1218 38234 10 0 7 chr5 83042623 83047791 -69489468 + L1Md_A LINE L1 461 5586 -297 5 1218 8801 15 0 0 chr5 83047791 83048787 -69488472 + L1Md_A LINE L1 5587 6582 0 5 1218 12547 76 2 6 chr5 83050278 83052713 -69484546 - L1Md_F2 LINE L1 0 6582 4158 5 1218 563 206 0 0 chr5 83052710 83052817 -69484442 + Lx3C LINE L1 5356 5462 -424 5 1218 1500 77 3 0 chr5 83052788 83053004 -69484255 - L1Md_F2 LINE L1 -206 6376 6155 5 1218 723 47 9 0 chr5 83053004 83053111 -69484148 + L1Md_T LINE L1 6475 6582 0 5 1218 2442 173 25 0 chr5 83053113 83053649 -69483610 + Lx3C LINE L1 5455 5997 -976 5 1218 4430 50 0 1 chr5 83053645 83054278 -69482981 + L1Md_F3 LINE L1 5496 6127 -457 5 1218 1356 58 0 0 chr5 83054298 83054472 -69482787 + L1Md_F3 LINE L1 6398 6571 -13 5 1218 3000 141 23 23 chr5 83054478 83055001 -69482258 + Lx3C LINE L1 6000 6522 -454 5 1218 489 148 11 0 chr5 83055003 83055091 -69482168 + RMER6-int LTR ERVK 700 788 -2389 5 1218 5703 206 64 88 chr5 83055078 83055659 -69481600 + RMER6-int LTR ERVK 1478 2126 -1051 5 1218 1078 82 6 40 chr5 83055659 83055836 -69481423 - L1_Mus1 LINE L1 0 6567 6397 5 1218 5703 200 42 60 chr5 83055836 83056969 -69480290 + RMER6-int LTR ERVK 2127 3152 -25 5 1218 890 234 56 50 chr5 83056970 83057445 -69479814 + RMER6A LTR ERVK 386 706 -14 5 1218 418 348 30 36 chr5 83057475 83057914 -69479345 - L1_Mur3 LINE L1 -1156 4724 4289 6 1218 247 179 0 0 chr5 83058440 83058479 -69478780 + B2_Mm2 SINE B2 8 46 -149 6 1218 6998 133 21 9 chr5 83058494 83059647 -69477612 - Lx3A LINE L1 -6 6975 5810 6 1218 219 200 0 20 chr5 83059647 83059698 -69477561 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1218 15375 127 257 7 chr5 83059890 83060924 -69476335 - Lx3A LINE L1 -77 5809 4343 6 1218 1012 96 7 40 chr5 83060924 83061076 -69476183 - B1_Mm SINE Alu 0 147 1 6 1218 15375 127 257 7 chr5 83061076 83061153 -69476106 - Lx3A LINE L1 -1544 4342 4138 6 1218 549 30 0 0 chr5 83061153 83061220 -69476039 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1218 15375 127 257 7 chr5 83061220 83061862 -69475397 - Lx3A LINE L1 -1749 4137 3487 6 1218 180 0 0 0 chr5 83061862 83061882 -69475377 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6 1218 15375 127 257 7 chr5 83061882 83063483 -69473776 - Lx3A LINE L1 -2400 3486 1619 6 1218 4469 41 2 4 chr5 83063484 83064051 -69473208 - L1Md_F3 LINE L1 0 6584 6027 6 1218 33621 88 19 3 chr5 83064121 83069231 -69468028 - L1Md_F3 LINE L1 -270 5613 217 6 1218 5655 158 33 14 chr5 83069232 83070755 -69466504 - L1_Mur1 LINE L1 -4258 1628 23 6 1218 392 329 65 81 chr5 83070755 83070940 -69466319 + B3 SINE B2 9 190 -5 6 1218 26 64 0 0 chr5 83071678 83071725 -69465534 + AT_rich Low_complexity Low_complexity 1 47 0 7 1218 1151 75 0 0 chr5 83072570 83072716 -69464543 + B1_Mm SINE Alu 2 147 0 7 1218 599 279 28 65 chr5 83072768 83072983 -69464276 - B3 SINE B2 -6 210 4 7 1218 40523 12 0 6 chr5 83072996 83079199 -69458060 - L1Md_A LINE L1 0 6582 422 7 1218 229 260 14 14 chr5 83079676 83079750 -69457509 + (TA)n Simple_repeat Simple_repeat 1 74 0 7 1218 1318 287 37 42 chr5 83080095 83080284 -69456975 + BGLII_B LTR ERVK 1 184 -257 7 1218 915 10 0 0 chr5 83080284 83080388 -69456871 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 1218 1318 287 37 42 chr5 83080388 83080631 -69456628 + BGLII_B LTR ERVK 185 431 -10 7 1218 1296 232 43 17 chr5 83080673 83081020 -69456239 + MYSERV6-int LTR ERVK 3698 4053 -4906 7 1218 1180 293 56 58 chr5 83081436 83082004 -69455255 + MYSERV16_I-int LTR ERVK 526 1092 -1234 7 1218 22 0 0 0 chr5 83082004 83082026 -69455233 + AT_rich Low_complexity Low_complexity 1 22 0 7 1218 601 167 22 15 chr5 83082027 83082161 -69455098 - Lx3B LINE L1 -2 6971 6837 8 1218 428 81 48 0 chr5 83082161 83082223 -69455036 - Lx3C LINE L1 -1130 5846 5782 8 1218 453 115 0 0 chr5 83082227 83082314 -69454945 + (TA)n Simple_repeat Simple_repeat 2 88 0 8 1218 22 0 0 0 chr5 83082402 83082424 -69454835 + AT_rich Low_complexity Low_complexity 1 22 0 8 1218 373 301 37 42 chr5 83082426 83082617 -69454642 + B3A SINE B2 3 192 -6 8 1218 35383 56 12 3 chr5 83082726 83088165 -69449094 + L1Md_A LINE L1 98 5586 -297 8 1218 8298 39 0 0 chr5 83088165 83089161 -69448098 + L1Md_A LINE L1 5587 6582 0 8 1218 24 0 0 0 chr5 83089960 83089984 -69447275 + AT_rich Low_complexity Low_complexity 1 24 0 8 1218 343 128 89 13 chr5 83090699 83090778 -69446481 + L1_Rod LINE L1 1031 1115 -6493 8 1218 10447 86 0 0 chr5 83090807 83092245 -69445014 - L1_Mm LINE L1 -1669 4214 2777 8 1218 3375 58 2 5 chr5 83092246 83092681 -69444578 + L1Md_F2 LINE L1 6149 6582 0 8 1218 467 261 12 29 chr5 83092722 83092938 -69444321 + L1_Rod LINE L1 1168 1380 -4467 8 1218 332 115 0 143 chr5 83092948 83093039 -69444220 + Lx LINE L1 6561 6638 -16 9 1218 342 0 0 0 chr5 83093039 83093077 -69444182 + (TA)n Simple_repeat Simple_repeat 2 39 0 9 1218 281 266 18 18 chr5 83093077 83093188 -69444071 + L1_Rod LINE L1 1397 1507 -4340 8 1218 1764 203 43 25 chr5 83093188 83093587 -69443672 - MTB_Mm LTR MaLR 0 407 2 9 1218 485 267 67 24 chr5 83093610 83093775 -69443484 + Lx6 LINE L1 6288 6459 -1001 9 1218 996 271 85 0 chr5 83093799 83094080 -69443179 + Lx6 LINE L1 6794 7098 -362 9 1218 244 266 31 0 chr5 83094080 83094144 -69443115 - Tigger5 DNA MER2_type -1926 480 415 9 1218 284 264 11 22 chr5 83094157 83094246 -69443013 + Lx6 LINE L1 7177 7264 -196 9 1218 735 44 0 0 chr5 83094262 83094353 -69442906 + (TTTC)n Simple_repeat Simple_repeat 1 91 0 9 1218 992 175 11 3 chr5 83094355 83094624 -69442635 + CT-rich Low_complexity Low_complexity 1 270 0 9 1218 369 0 0 0 chr5 83094624 83094665 -69442594 + (TTC)n Simple_repeat Simple_repeat 1 41 0 9 1218 4348 47 9 0 chr5 83094668 83095204 -69442055 - L1_Mus1 LINE L1 -1 6566 6026 9 1218 822 48 0 0 chr5 83095204 83095307 -69441952 + (TTC)n Simple_repeat Simple_repeat 1 103 0 9 1218 295 341 53 18 chr5 83095312 83095428 -69441831 + Lx6 LINE L1 7277 7390 -70 9 1218 714 12 0 0 chr5 83095428 83095511 -69441748 + (GGAAA)n Simple_repeat Simple_repeat 1 83 0 1 1218 295 341 53 18 chr5 83095511 83095564 -69441695 + Lx6 LINE L1 7391 7452 -8 9 1218 448 274 120 30 chr5 83095618 83095885 -69441374 + Lx9 LINE L1 5649 5970 -1674 1 1218 292 320 0 55 chr5 83096005 83096114 -69441145 + Lx9 LINE L1 7073 7175 -469 1 1218 331 257 45 39 chr5 83096222 83096400 -69440859 + Lx9 LINE L1 7333 7511 -133 1 1218 2500 116 2 15 chr5 83096542 83096937 -69440322 + Lx3A LINE L1 6584 6973 -8 1 1218 21 0 0 0 chr5 83096951 83096972 -69440287 + AT_rich Low_complexity Low_complexity 1 21 0 1 1218 276 102 0 0 chr5 83097341 83097390 -69439869 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 1 1218 477 0 0 0 chr5 83097391 83097444 -69439815 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1218 269 254 0 33 chr5 83097483 83097544 -69439715 - B3A SINE B2 -130 68 10 1 1218 1452 296 25 9 chr5 83097806 83098243 -69439016 - MT2A LTR ERVL -88 445 2 1 1218 2631 57 30 0 chr5 83098563 83098899 -69438360 - ORR1A1 LTR MaLR 0 346 1 1 1218 23 0 0 0 chr5 83098999 83099022 -69438237 + AT_rich Low_complexity Low_complexity 1 23 0 1 1218 28 61 0 0 chr5 83099271 83099320 -69437939 + AT_rich Low_complexity Low_complexity 1 49 0 1 1218 30 77 0 0 chr5 83099357 83099422 -69437837 + AT_rich Low_complexity Low_complexity 1 65 0 1 1219 23 33 0 0 chr5 83099705 83099735 -69437524 + AT_rich Low_complexity Low_complexity 1 30 0 1 1219 23 0 0 0 chr5 83100731 83100754 -69436505 + AT_rich Low_complexity Low_complexity 1 23 0 1 1219 372 271 62 34 chr5 83101396 83101572 -69435687 - Lx9 LINE L1 -147 7497 7317 1 1219 548 233 0 7 chr5 83101621 83101768 -69435491 + (TA)n Simple_repeat Simple_repeat 1 146 0 1 1219 21 0 0 0 chr5 83101973 83101994 -69435265 + AT_rich Low_complexity Low_complexity 1 21 0 1 1219 22 0 0 0 chr5 83102952 83102974 -69434285 + AT_rich Low_complexity Low_complexity 1 22 0 1 1219 22 0 0 0 chr5 83103554 83103576 -69433683 + AT_rich Low_complexity Low_complexity 1 22 0 1 1219 189 0 0 0 chr5 83103808 83103829 -69433430 + (TC)n Simple_repeat Simple_repeat 1 21 0 1 1219 207 125 0 0 chr5 83104717 83104757 -69432502 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1219 219 103 0 0 chr5 83105246 83105285 -69431974 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1219 4210 69 17 22 chr5 83105311 83105905 -69431354 - L1Md_F2 LINE L1 0 6582 5992 1 1219 416 198 10 77 chr5 83106082 83106186 -69431073 - ID_B1 SINE B4 0 224 128 1 1219 297 289 50 58 chr5 83106086 83106207 -69431052 - B1F2 SINE Alu 0 149 30 1 1219 393 326 7 71 chr5 83107394 83107549 -69429710 - B3A SINE B2 0 198 54 1 1219 957 285 68 32 chr5 83107570 83107940 -69429319 - Lx9 LINE L1 -952 6692 6310 1 1219 445 225 45 30 chr5 83107931 83108064 -69429195 + Lx9 LINE L1 6694 6828 -816 1 1219 254 255 86 52 chr5 83108122 83108238 -69429021 - B3 SINE B2 0 216 97 1 1219 455 306 27 5 chr5 83108410 83108594 -69428665 + Lx9 LINE L1 7196 7383 -261 1 1219 675 185 89 0 chr5 83108755 83108901 -69428358 + RLTR11A LTR ERVK 1 159 -369 1 1219 1416 156 4 0 chr5 83108905 83109142 -69428117 - L1_Mur1 LINE L1 -876 5010 4773 1 1219 3256 122 10 8 chr5 83109150 83109662 -69427597 + Lx2 LINE L1 5618 6130 -867 1 1219 1875 190 51 3 chr5 83109662 83109963 -69427296 + RLTR11A LTR ERVK 141 449 -79 1 1219 504 0 0 0 chr5 83109963 83110019 -69427240 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1219 1875 190 51 3 chr5 83110019 83110087 -69427172 + RLTR11A LTR ERVK 450 527 -1 1 1219 970 128 7 0 chr5 83110138 83110279 -69426980 + B1_Mus1 SINE Alu 1 142 -6 1 1219 180 111 0 0 chr5 83110280 83110307 -69426952 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1219 235 354 60 37 chr5 83110430 83110729 -69426530 + Lx8 LINE L1 6718 7023 -450 1 1219 522 0 0 0 chr5 83110940 83110998 -69426261 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1219 341 330 34 46 chr5 83111524 83111762 -69425497 - MLT1B LTR MaLR -107 283 49 1 1219 338 145 26 0 chr5 83112482 83112558 -69424701 - Lx2A LINE L1 -1 7007 6930 1 1219 2308 162 47 2 chr5 83112558 83112966 -69424293 - Lx2A LINE L1 -32 6976 6551 1 1219 1256 257 11 1 chr5 83112946 83113256 -69424003 - L1_Mur1 LINE L1 -521 5779 5461 1 1219 597 245 88 124 chr5 83113253 83113414 -69423845 + Lx7 LINE L1 7356 7517 -179 1 1219 695 62 10 0 chr5 83113414 83113511 -69423748 + (GTCTG)n Simple_repeat Simple_repeat 2 99 0 1 1219 597 245 88 124 chr5 83113511 83113703 -69423556 + Lx7 LINE L1 7518 7696 0 1 1219 723 276 85 19 chr5 83113926 83114196 -69423063 - Lx8 LINE L1 -184 7289 7002 1 1219 34 0 0 0 chr5 83114739 83114773 -69422486 + AT_rich Low_complexity Low_complexity 1 34 0 1 1219 562 313 86 8 chr5 83115932 83116177 -69421082 + Lx8 LINE L1 7055 7318 -155 1 1219 258 309 52 96 chr5 83116452 83116588 -69420671 - RMER15 LTR ERVL -40 535 406 1 1219 278 326 15 110 chr5 83117116 83117256 -69420003 - Lx8 LINE L1 -329 7144 7017 1 1219 4663 66 2 5 chr5 83117256 83117868 -69419391 - L1Md_F2 LINE L1 -19 6563 5954 1 1219 278 326 15 110 chr5 83117868 83117927 -69419332 - Lx8 LINE L1 -457 7016 6964 1 1219 562 297 25 94 chr5 83117938 83118224 -69419035 - RMER15-int LTR ERVL -73 4926 4661 1 1219 527 368 80 5 chr5 83118245 83118644 -69418615 - Lx8 LINE L1 -792 6681 6253 1 1219 497 304 71 40 chr5 83119335 83119588 -69417671 - RMER15-int LTR ERVL -3878 1121 861 1 1219 425 84 0 14 chr5 83119755 83119827 -69417432 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 1 1219 215 61 30 0 chr5 83119941 83119974 -69417285 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1219 1209 187 0 5 chr5 83121012 83121227 -69416032 - Lx4B LINE L1 -8 7050 6837 1 1219 29 60 0 0 chr5 83121483 83121533 -69415726 + AT_rich Low_complexity Low_complexity 1 50 0 1 1219 3107 206 71 13 chr5 83121550 83121678 -69415581 + Lx6 LINE L1 5091 5227 -653 1 1219 414 0 0 0 chr5 83121678 83121724 -69415535 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1219 5623 246 76 26 chr5 83121724 83123828 -69413431 + Lx6 LINE L1 5228 7456 -4 1 1219 387 0 0 0 chr5 83124024 83124067 -69413192 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1219 346 341 42 60 chr5 83124114 83124398 -69412861 - B4A SINE B4 -13 279 1 1 1219 255 250 23 0 chr5 83124645 83124733 -69412526 + L1M4 LINE L1 3218 3307 -2839 1 1219 241 327 90 68 chr5 83125154 83125429 -69411830 - MER67C LTR ERV1 -342 369 59 1 1219 1811 137 71 21 chr5 83125645 83125981 -69411278 - Lx3B LINE L1 -3 6970 6618 1 1219 180 77 0 0 chr5 83126192 83126218 -69411041 + (CTATT)n Simple_repeat Simple_repeat 5 30 0 1 1219 540 77 0 0 chr5 83127196 83127274 -69409985 + (GA)n Simple_repeat Simple_repeat 1 78 0 1 1219 574 294 25 0 chr5 83127274 83127437 -69409822 - B3A SINE B2 -31 167 1 1 1219 23 0 0 0 chr5 83127624 83127647 -69409612 + AT_rich Low_complexity Low_complexity 1 23 0 1 1219 489 247 28 17 chr5 83127647 83127828 -69409431 - Lx9 LINE L1 -17 7627 7445 1 1219 21 0 0 0 chr5 83127906 83127927 -69409332 + AT_rich Low_complexity Low_complexity 1 21 0 1 1219 2121 193 126 129 chr5 83128383 83128667 -69408592 - RMER17A2 LTR ERVK -15 794 446 1 1219 564 15 0 0 chr5 83128667 83128732 -69408527 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1219 2121 144 102 144 chr5 83128732 83129221 -69408038 - RMER17A2 LTR ERVK -457 449 2 1 1219 1553 258 43 29 chr5 83129914 83130329 -69406930 - Lx6 LINE L1 0 7460 7040 1 1219 4645 253 26 15 chr5 83130381 83131845 -69405414 - Lx6 LINE L1 -589 6871 5385 1 1219 290 344 72 13 chr5 83131849 83132002 -69405257 - Lx8 LINE L1 -435 7038 6877 1 1219 220 146 24 0 chr5 83132031 83132072 -69405187 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 1219 2521 63 147 3 chr5 83132105 83132473 -69404786 + BGLII LTR ERVK 1 421 0 1 1219 669 315 89 22 chr5 83132718 83133033 -69404226 - Lx8 LINE L1 -776 6697 6362 1 1219 314 267 70 0 chr5 83133031 83133117 -69404142 + Lx6 LINE L1 6173 6264 -1196 1 1219 1051 184 118 68 chr5 83133100 83133380 -69403879 + Lx6 LINE L1 6761 7054 -406 1 1219 225 250 0 19 chr5 83133367 83133420 -69403839 - Lx8 LINE L1 -1123 6350 6299 1 1219 818 307 41 22 chr5 83134475 83134838 -69402421 - ORR1D2 LTR MaLR 0 370 1 1 1219 294 73 0 0 chr5 83135630 83135671 -69401588 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1219 44 46 0 0 chr5 83136143 83136208 -69401051 + AT_rich Low_complexity Low_complexity 1 65 0 1 1219 38 39 0 0 chr5 83136337 83136389 -69400870 + AT_rich Low_complexity Low_complexity 1 52 0 1 1219 28 61 0 0 chr5 83136452 83136501 -69400758 + AT_rich Low_complexity Low_complexity 1 49 0 1 1219 5170 43 0 9 chr5 83136605 83137238 -69400021 - L1Md_F2 LINE L1 -2 6580 5954 1 1219 356 326 63 98 chr5 83137302 83137669 -69399590 - Lx9 LINE L1 -498 7146 6793 1 1219 21 0 0 0 chr5 83137907 83137928 -69399331 + AT_rich Low_complexity Low_complexity 1 21 0 1 1219 3052 74 0 0 chr5 83138375 83138769 -69398490 - L1_Mus1 LINE L1 0 6567 6174 1 1219 1561 60 60 0 chr5 83138769 83138986 -69398273 + L1_Mus1 LINE L1 5932 6161 -406 1 1219 285 230 37 65 chr5 83139221 83139328 -69397931 - L1MC3 LINE L1 -61 7724 7621 1 1219 2592 77 6 0 chr5 83139387 83139726 -69397533 + L1_Mus1 LINE L1 6019 6359 -208 1 1219 2108 119 68 0 chr5 83139717 83140053 -69397206 - Lx2 LINE L1 -131 6866 6508 1 1219 301 119 0 0 chr5 83140045 83140087 -69397172 + L1_Mur1 LINE L1 4707 4748 -1138 1 1219 413 287 73 16 chr5 83140157 83140281 -69396978 + B3A SINE B2 11 141 -57 1 1219 27 81 0 0 chr5 83140404 83140466 -69396793 + AT_rich Low_complexity Low_complexity 1 62 0 1 1219 24 32 0 0 chr5 83140493 83140524 -69396735 + AT_rich Low_complexity Low_complexity 1 31 0 1 1219 2551 123 19 14 chr5 83140950 83141372 -69395887 + Lx3_Mus LINE L1 5952 6375 -634 1 1219 1579 88 0 0 chr5 83141402 83141617 -69395642 + L1_Mus1 LINE L1 6353 6567 0 1 1219 606 284 30 5 chr5 83142045 83142243 -69395016 + B3 SINE B2 3 205 -11 1 1219 25 65 0 0 chr5 83142703 83142749 -69394510 + AT_rich Low_complexity Low_complexity 1 46 0 1 1219 785 107 13 45 chr5 83142753 83142910 -69394349 - L1_Mus4 LINE L1 -2 6634 6483 1 1219 396 316 107 27 chr5 83143032 83143256 -69394003 + Lx8 LINE L1 7079 7320 -153 1 1219 232 102 0 71 chr5 83143229 83143271 -69393988 + RMER1C Other Other 1166 1204 -138 1 1219 316 344 15 23 chr5 83143279 83143410 -69393849 - L1MD LINE L1 -2945 3201 3072 1 1219 225 128 0 0 chr5 83143410 83143457 -69393802 + (T)n Simple_repeat Simple_repeat 1 47 0 1 1219 438 109 0 0 chr5 83143457 83143521 -69393738 - B1_Mm SINE Alu 0 147 84 1 1219 24 0 0 0 chr5 83143707 83143731 -69393528 + AT_rich Low_complexity Low_complexity 1 24 0 1 1219 26 82 0 0 chr5 83145576 83145637 -69391622 + AT_rich Low_complexity Low_complexity 1 61 0 2 1219 317 318 54 10 chr5 83146257 83146449 -69390810 - L1M4 LINE L1 -619 5552 5352 2 1219 21 0 0 0 chr5 83147069 83147090 -69390169 + AT_rich Low_complexity Low_complexity 1 21 0 2 1219 23 0 0 0 chr5 83147639 83147662 -69389597 + AT_rich Low_complexity Low_complexity 1 23 0 2 1219 2187 185 40 21 chr5 83148176 83148657 -69388602 + RLTR16 LTR ERVK 3 492 -13 2 1219 369 252 36 0 chr5 83148728 83148839 -69388420 - L1M4 LINE L1 -2139 4007 3893 2 1219 222 382 9 47 chr5 83148889 83148996 -69388263 + PB1D7 SINE Alu 13 115 -5 2 1219 24 0 0 0 chr5 83149119 83149143 -69388116 + AT_rich Low_complexity Low_complexity 1 24 0 2 1219 931 198 43 0 chr5 83149301 83149508 -69387751 + L1_Mur3 LINE L1 5291 5506 -374 2 1219 996 55 0 0 chr5 83149511 83149638 -69387621 + (TCC)n Simple_repeat Simple_repeat 3 129 0 2 1219 216 0 0 0 chr5 83150476 83150500 -69386759 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1219 26 50 0 0 chr5 83150985 83151025 -69386234 + AT_rich Low_complexity Low_complexity 1 40 0 2 1219 21 36 0 0 chr5 83151609 83151637 -69385622 + AT_rich Low_complexity Low_complexity 1 28 0 2 1219 2457 185 222 22 chr5 83151909 83152328 -69384931 - RMER6A LTR ERVK 0 756 326 2 1219 996 83 0 0 chr5 83152328 83152485 -69384774 + (TC)n Simple_repeat Simple_repeat 1 157 0 2 1219 2457 185 222 22 chr5 83152485 83152644 -69384615 - RMER6A LTR ERVK -431 325 57 2 1219 207 0 0 0 chr5 83152644 83152667 -69384592 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1219 2457 185 222 22 chr5 83152667 83152717 -69384542 - RMER6A LTR ERVK -700 56 3 2 1219 212 357 10 10 chr5 83153061 83153160 -69384099 + MIRb SINE MIR 124 222 -46 2 1219 2681 113 0 21 chr5 83153200 83153581 -69383678 + IAPEy-int LTR ERVK 5270 5642 -1939 2 1219 3420 91 2 2 chr5 83153564 83154027 -69383232 + IAPEy-int LTR ERVK 5752 6214 -1367 2 1219 5349 108 5 8 chr5 83154017 83154798 -69382461 + IAPEy-int LTR ERVK 6735 7513 0 2 1219 2229 104 32 3 chr5 83154799 83155145 -69382114 + IAPEY2_LTR LTR ERVK 2 357 0 2 1219 233 318 0 0 chr5 83155553 83155619 -69381640 + B4 SINE B4 20 85 -207 2 1219 240 154 0 0 chr5 83155762 83155814 -69381445 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 2 1219 210 246 16 32 chr5 83155879 83155942 -69381317 + (CATA)n Simple_repeat Simple_repeat 2 63 0 2 1219 21 36 0 0 chr5 83155942 83155970 -69381289 + AT_rich Low_complexity Low_complexity 1 28 0 2 1219 1071 283 105 67 chr5 83156344 83156809 -69380450 - RLTR19 LTR ERVK -7 492 10 2 1219 978 258 35 72 chr5 83156848 83157166 -69380093 - RMER20B LTR ERVK -22 605 300 2 1219 231 36 0 0 chr5 83157856 83157884 -69379375 + (TGG)n Simple_repeat Simple_repeat 2 29 0 2 1219 467 138 19 128 chr5 83157884 83158006 -69379253 + B1_Mur4 SINE Alu 18 130 -17 2 1219 1506 229 106 0 chr5 83158180 83158586 -69378673 - Lx9 LINE L1 0 7644 7196 2 1219 27 0 0 0 chr5 83159680 83159707 -69377552 + AT_rich Low_complexity Low_complexity 1 27 0 2 1219 321 264 109 11 chr5 83160014 83160106 -69377153 - B3 SINE B2 -14 202 102 2 1219 2974 76 2 5 chr5 83161381 83161778 -69375481 + MTA_Mm LTR MaLR 1 396 0 2 1219 248 239 42 0 chr5 83163853 83163924 -69373335 - L1_Mur3 LINE L1 -1387 4493 4420 2 1219 1037 254 125 70 chr5 83164268 83164836 -69372423 - RLTR40 LTR ERVK -44 773 175 2 1219 577 237 29 22 chr5 83164953 83165091 -69372168 - B1F2 SINE Alu -10 139 1 2 1219 270 377 92 0 chr5 83165562 83165692 -69371567 + RSINE1 SINE B4 19 160 -5 2 1219 1169 7 21 0 chr5 83166001 83166141 -69371118 + (CTTTG)n Simple_repeat Simple_repeat 5 147 0 2 1219 983 68 15 0 chr5 83166141 83166273 -69370986 - B1_Mus1 SINE Alu -14 134 1 2 1219 236 224 136 17 chr5 83167331 83167390 -69369869 + tRNA-Ala-GCY_ tRNA tRNA 1 66 -9 2 1219 358 287 73 18 chr5 83167631 83167741 -69369518 - B1F SINE Alu -11 138 23 2 1219 1893 106 6 43 chr5 83167910 83168235 -69369024 - Lx3B LINE L1 -779 6194 5882 2 1219 1737 159 8 92 chr5 83168240 83168599 -69368660 + ORR1A4 LTR MaLR 1 329 0 2 1219 24 0 0 0 chr5 83169562 83169586 -69367673 + AT_rich Low_complexity Low_complexity 1 24 0 2 1219 1412 313 32 18 chr5 83171181 83171679 -69365580 + Lx7 LINE L1 6221 6725 -971 2 1219 4720 182 24 30 chr5 83171679 83172673 -69364586 - Lx2 LINE L1 -189 5688 4701 2 1219 7733 145 35 2 chr5 83172670 83173970 -69363289 + Lx2 LINE L1 5655 6997 0 2 1219 806 340 76 19 chr5 83173970 83174455 -69362804 + Lx7 LINE L1 6729 7241 -455 2 1219 2484 296 74 31 chr5 83174500 83175121 -69362138 - ORR1D1-int LTR MaLR -145 1225 563 2 1219 4275 19 12 0 chr5 83175121 83175608 -69361651 + MT2_Mm LTR ERVL 1 493 0 2 1219 2484 296 74 31 chr5 83175608 83175890 -69361369 - ORR1D1-int LTR MaLR -808 562 283 2 1219 399 227 0 0 chr5 83175898 83175986 -69361273 - ORR1D1-int LTR MaLR -1192 178 91 2 1219 9990 40 21 1 chr5 83175986 83177873 -69359386 - L1Md_F2 LINE L1 0 6582 4652 2 1219 3195 51 24 0 chr5 83177872 83178285 -69358974 + L1Md_F2 LINE L1 4233 4655 -1228 2 1219 370 213 62 21 chr5 83178286 83178382 -69358877 - ORR1D1-int LTR MaLR -1408 101 2 2 1219 684 285 30 0 chr5 83178383 83178583 -69358676 - ORR1D1 LTR MaLR 0 374 169 2 1219 283 181 28 0 chr5 83178585 83178657 -69358602 + GA-rich Low_complexity Low_complexity 2 75 0 2 1219 22 56 0 0 chr5 83178710 83178746 -69358513 + AT_rich Low_complexity Low_complexity 1 36 0 2 1219 3384 30 2 0 chr5 83179020 83179415 -69357844 - MTA_Mm LTR MaLR 0 396 1 2 1219 25 75 0 0 chr5 83179645 83179698 -69357561 + AT_rich Low_complexity Low_complexity 1 53 0 2 1219 27 49 0 0 chr5 83179743 83179784 -69357475 + AT_rich Low_complexity Low_complexity 1 41 0 2 1219 24 53 0 0 chr5 83179858 83179896 -69357363 + AT_rich Low_complexity Low_complexity 1 38 0 2 1219 297 0 0 0 chr5 83180503 83180536 -69356723 + (TC)n Simple_repeat Simple_repeat 2 34 0 2 1219 189 0 0 0 chr5 83181208 83181229 -69356030 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1219 253 213 16 16 chr5 83181233 83181295 -69355964 + L1_Rod LINE L1 4620 4681 -1166 2 1219 213 39 0 0 chr5 83181357 83181383 -69355876 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1219 486 136 0 0 chr5 83182020 83182101 -69355158 + (ATGGTG)n Simple_repeat Simple_repeat 6 86 0 2 1219 713 99 8 0 chr5 83182122 83182243 -69355016 + (TAGA)n Simple_repeat Simple_repeat 2 123 0 2 1219 1346 221 143 26 chr5 83182806 83183183 -69354076 + MTC LTR MaLR 1 421 0 2 1219 1765 150 9 58 chr5 83183255 83183580 -69353679 - ORR1A4 LTR MaLR 0 329 21 2 1219 729 283 80 112 chr5 83183696 83184186 -69353073 + RLTR12B LTR ERVK 35 508 -20 2 1219 33 73 0 0 chr5 83184712 83184780 -69352479 + AT_rich Low_complexity Low_complexity 1 68 0 2 1219 243 0 0 0 chr5 83184794 83184821 -69352438 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1219 1476 234 77 17 chr5 83184835 83185630 -69351629 + RMER6C LTR ERVK 1 686 -4 2 1219 279 130 0 0 chr5 83185751 83185805 -69351454 + (T)n Simple_repeat Simple_repeat 1 54 0 2 1219 286 418 71 0 chr5 83185819 83185960 -69351299 + B4A SINE B4 139 289 -3 2 1219 360 0 0 0 chr5 83186089 83186129 -69351130 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1219 252 284 13 51 chr5 83186156 83186234 -69351025 - B3A SINE B2 -122 76 2 2 1219 507 278 22 51 chr5 83187899 83188077 -69349182 - MTEb LTR MaLR -4 375 203 2 1219 294 187 92 13 chr5 83188964 83189040 -69348219 + RLTR11B LTR ERVK 233 314 -139 2 1219 379 263 60 17 chr5 83189031 83189147 -69348112 - MTE-int LTR MaLR -252 1328 1208 2 1219 282 298 48 87 chr5 83189158 83189261 -69347998 - PB1D10 SINE Alu -13 104 6 2 1219 246 200 105 12 chr5 83190874 83190960 -69346299 + Lx9 LINE L1 7544 7637 -7 2 1219 1728 330 56 22 chr5 83190977 83191360 -69345899 + Lx9 LINE L1 6521 6923 -721 2 1219 2920 81 7 12 chr5 83191360 83191774 -69345485 - L1Md_F2 LINE L1 0 6582 6171 2 1219 1728 330 56 22 chr5 83191774 83192335 -69344924 + Lx9 LINE L1 6924 7497 -147 2 1219 22 56 0 0 chr5 83193437 83193473 -69343786 + AT_rich Low_complexity Low_complexity 1 36 0 2 1219 22 0 0 0 chr5 83193488 83193510 -69343749 + AT_rich Low_complexity Low_complexity 1 22 0 2 1219 230 354 10 20 chr5 83194663 83194761 -69342498 - RMER20B LTR ERVK -494 133 37 2 1219 618 14 0 0 chr5 83194797 83194868 -69342391 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 2 1219 1173 91 27 63 chr5 83194871 83195094 -69342165 - Lx LINE L1 -12 6642 6428 2 1219 723 123 25 0 chr5 83195119 83195241 -69342018 + L1_Mm LINE L1 3892 4016 -1867 2 1219 746 343 44 36 chr5 83195262 83195673 -69341586 - RLTR4_MM-int LTR ERV1 -2472 5129 4830 2 1219 454 198 41 62 chr5 83195905 83196002 -69341257 - L1_Mur3 LINE L1 -7116 596 502 2 1219 5157 42 8 2 chr5 83196005 83196643 -69340616 - L1Md_F2 LINE L1 0 6582 5941 2 1219 2035 105 27 23 chr5 83196643 83197074 -69340185 + L1Md_F2 LINE L1 5733 6121 -887 2 1219 349 20 0 0 chr5 83197115 83197165 -69340094 + L1Md_T LINE L1 6533 6582 0 2 1219 676 326 98 41 chr5 83197375 83197724 -69339535 - L1MC2 LINE L1 -54 6290 5946 2 1219 249 57 0 0 chr5 83197724 83197759 -69339500 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1219 676 326 98 41 chr5 83197759 83198382 -69338877 - L1MC2 LINE L1 -399 5945 5263 2 1219 6083 52 1 1 chr5 83199786 83200910 -69336349 - L1Md_F2 LINE L1 -275 6307 5185 2 1219 1998 47 4 4 chr5 83200914 83201168 -69336091 + L1Md_F2 LINE L1 6326 6579 -3 2 1219 32883 93 7 11 chr5 83201720 83207893 -69329366 - L1Md_F2 LINE L1 -2 6580 217 2 1219 33 25 0 0 chr5 83208062 83208102 -69329157 + AT_rich Low_complexity Low_complexity 1 40 0 2 1219 2654 203 105 23 chr5 83208235 83208900 -69328359 + RMER6D LTR ERVK 1 720 0 2 1219 275 100 0 57 chr5 83208927 83208980 -69328279 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1219 249 284 14 0 chr5 83209315 83209389 -69327870 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 2 1219 202 189 0 92 chr5 83209650 83209726 -69327533 + T-rich Low_complexity Low_complexity 5 73 0 2 1219 661 228 28 0 chr5 83209726 83209871 -69327388 - B1_Mur3 SINE Alu 0 149 1 2 1219 234 345 46 0 chr5 83209949 83210036 -69327223 - Tigger5 DNA MER2_type -6 2400 2310 2 1219 267 296 61 0 chr5 83210589 83210687 -69326572 + L1_Rod LINE L1 5108 5211 -636 2 1219 1756 230 83 9 chr5 83210782 83211216 -69326043 - RMER1B Other Other -24 1042 577 2 1219 1317 318 58 24 chr5 83211209 83211669 -69325590 - RMER1A Other Other -575 455 13 2 1219 357 43 0 0 chr5 83211669 83211716 -69325543 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 2 1219 887 325 103 47 chr5 83211716 83211819 -69325440 - RMER1A Other Other -586 444 370 2 1219 2881 92 17 15 chr5 83211819 83212225 -69325034 - MTB_Mm LTR MaLR 0 407 1 2 1219 1418 287 104 10 chr5 83212225 83212879 -69324380 - RMER1B Other Other -617 449 17 2 1219 3200 114 4 12 chr5 83213499 83213978 -69323281 + MT2C_Mm LTR ERVL 1 475 0 3 1219 11721 127 34 16 chr5 83213978 83215853 -69321406 + MERVL-int LTR ERVL 1 1908 -3577 3 1219 6544 98 24 1 chr5 83215841 83216757 -69320502 + MERVL-int LTR ERVL 3115 4051 -1434 3 1219 3906 65 2 0 chr5 83216757 83217261 -69319998 - L1_Mm LINE L1 -553 5330 4826 3 1219 3399 68 14 0 chr5 83217261 83217700 -69319559 + L1Md_F2 LINE L1 6134 6578 -4 3 1219 1118 131 6 0 chr5 83217709 83217869 -69319390 + MERVL-int LTR ERVL 4049 4209 -1276 3 1219 207 0 0 0 chr5 83217937 83217960 -69319299 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1219 1035 101 0 0 chr5 83217960 83218099 -69319160 - B1_Mus2 SINE Alu -7 140 2 3 1219 1643 142 81 3 chr5 83218231 83218528 -69318731 + Lx2 LINE L1 6676 6995 -2 3 1219 636 314 71 35 chr5 83218545 83218855 -69318404 + Lx8 LINE L1 6808 7128 -345 3 1219 243 391 56 31 chr5 83219128 83219289 -69317970 + B3A SINE B2 26 190 -8 3 1219 25 0 0 0 chr5 83221762 83221787 -69315472 + AT_rich Low_complexity Low_complexity 1 25 0 3 1219 213 121 0 0 chr5 83222695 83222728 -69314531 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1219 297 343 29 0 chr5 83223529 83223631 -69313628 + L1M4b LINE L1 104 208 -7126 3 1219 668 311 56 96 chr5 83223826 83224181 -69313078 - ORR1E LTR MaLR -18 341 1 3 1219 411 214 116 0 chr5 83224348 83224460 -69312799 + Lx7 LINE L1 7207 7331 -365 3 1219 219 69 0 0 chr5 83225350 83225379 -69311880 + (CATATA)n Simple_repeat Simple_repeat 1 29 0 3 1219 255 210 95 48 chr5 83225400 83225505 -69311754 + L1M3 LINE L1 5322 5431 -749 3 1219 759 309 53 51 chr5 83225558 83225776 -69311483 + Lx7 LINE L1 5675 5890 -1806 3 1219 1145 82 0 0 chr5 83225776 83225922 -69311337 + B1_Mus1 SINE Alu 1 146 -2 3 1219 759 309 53 51 chr5 83225922 83226215 -69311044 + Lx7 LINE L1 5891 6187 -1509 3 1219 507 286 40 87 chr5 83226263 83226562 -69310697 + RLTR11B LTR ERVK 1 285 -168 3 1219 290 256 258 18 chr5 83226642 83226809 -69310450 + Tigger1 DNA MER2_type 1781 1987 -431 3 1219 1074 110 54 16 chr5 83227099 83227284 -69309975 + B2_Mm2 SINE B2 1 192 -3 3 1219 213 323 0 0 chr5 83227985 83228050 -69309209 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 1219 240 35 0 0 chr5 83228111 83228140 -69309119 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 3 1219 7288 100 10 2 chr5 83228143 83229824 -69307435 + L1_Mus2 LINE L1 4754 6451 -115 3 1219 189 0 0 0 chr5 83229824 83229845 -69307414 + (GA)n Simple_repeat Simple_repeat 1 21 0 3 1219 499 235 88 0 chr5 83229845 83229858 -69307401 + Lx7 LINE L1 6504 6516 -138 3 1219 1350 57 0 0 chr5 83229858 83230034 -69307225 + (GA)n Simple_repeat Simple_repeat 1 176 0 3 152 4301 46 0 0 chr5 83230330 83230852 -69306407 + L1Md_F3 LINE L1 6048 6569 -15 3 1220 24 0 0 0 chr5 83230975 83230999 -69306260 + AT_rich Low_complexity Low_complexity 1 24 0 3 1220 396 0 0 0 chr5 83232035 83232079 -69305180 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1220 216 0 0 0 chr5 83232349 83232373 -69304886 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1220 370 198 123 0 chr5 83232790 83232871 -69304388 + U6 snRNA snRNA 2 92 -15 3 1220 3344 276 105 21 chr5 83232890 83234244 -69303015 + Lx6 LINE L1 5587 7083 -377 3 1220 261 167 0 0 chr5 83234409 83234463 -69302796 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 1220 1943 175 56 7 chr5 83237005 83237413 -69299846 - Lx2B LINE L1 -655 6345 5918 3 1220 1876 222 27 51 chr5 83237411 83237781 -69299478 + Lx2B LINE L1 6523 6880 -120 3 1220 423 0 0 0 chr5 83237781 83237828 -69299431 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1220 1876 222 27 51 chr5 83237828 83237946 -69299313 + Lx2B LINE L1 6881 6999 -1 3 1220 25 51 0 0 chr5 83237956 83237995 -69299264 + AT_rich Low_complexity Low_complexity 1 39 0 3 1220 2458 105 36 3 chr5 83238377 83238741 -69298518 + MTB LTR MaLR 25 400 0 3 1220 29 0 0 0 chr5 83240024 83240053 -69297206 + AT_rich Low_complexity Low_complexity 1 29 0 3 1220 236 274 60 0 chr5 83240919 83241003 -69296256 + L1M4 LINE L1 5757 5845 -329 3 1220 786 22 0 0 chr5 83241411 83241503 -69295756 + (TC)n Simple_repeat Simple_repeat 1 92 0 3 1220 283 299 141 13 chr5 83241670 83241819 -69295440 + MERVL_2A-int LTR ERVL 4557 4724 -1037 3 1220 1064 122 12 0 chr5 83242170 83242334 -69294925 - BGLII_Mus LTR ERVK 0 422 257 3 1220 358 223 105 33 chr5 83242407 83242560 -69294699 + RMER3D-int LTR ERVK 680 843 -1999 3 1220 15260 56 2 0 chr5 83242567 83244518 -69292741 + L1Md_F2 LINE L1 3631 5585 -298 3 1220 7757 60 8 1 chr5 83244519 83245507 -69291752 + L1Md_F2 LINE L1 5587 6581 -1 3 1220 5016 191 91 50 chr5 83245593 83247097 -69290162 + RMER3D-int LTR ERVK 489 2375 -467 3 1220 543 209 32 32 chr5 83247103 83247261 -69289998 - RMER3D-int LTR ERVK -978 1864 1707 3 1220 197 239 22 0 chr5 83247537 83247583 -69289676 + MIRc SINE MIR 88 134 -134 3 1220 3130 57 3 0 chr5 83248767 83249151 -69288108 + IAPEY_LTR LTR ERVK 1 385 0 3 1220 206 77 26 0 chr5 83249282 83249302 -69287957 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 1220 261 0 0 0 chr5 83249302 83249331 -69287928 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1220 206 77 26 0 chr5 83249331 83249349 -69287910 + (TA)n Simple_repeat Simple_repeat 2 20 0 3 1220 378 0 0 0 chr5 83249461 83249503 -69287756 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1220 304 393 126 11 chr5 83249551 83249829 -69287430 + L1MDa LINE L1 19 328 -6305 3 1220 325 442 27 18 chr5 83250044 83250263 -69286996 + L1MDa LINE L1 671 891 -5742 3 1220 764 296 63 44 chr5 83250271 83250688 -69286571 - MT2B LTR ERVL 0 601 5 3 1220 460 313 121 34 chr5 83250859 83251246 -69286013 + L1MDa LINE L1 1101 1521 -5112 3 1220 387 300 9 18 chr5 83251553 83251665 -69285594 + PB1D9 SINE Alu 9 119 -1 3 1220 684 56 0 0 chr5 83251680 83251769 -69285490 + (GGGA)n Simple_repeat Simple_repeat 4 92 0 3 1220 180 77 0 0 chr5 83251907 83251933 -69285326 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 3 1220 255 170 0 0 chr5 83252521 83252568 -69284691 + A-rich Low_complexity Low_complexity 1 47 0 3 1220 326 411 26 7 chr5 83252568 83252720 -69284539 + RSINE1 SINE B4 5 159 -6 3 1220 642 343 88 24 chr5 83253265 83253561 -69283698 + ORR1D2 LTR MaLR 1 315 -55 3 1220 618 51 0 0 chr5 83253851 83253929 -69283330 + (TA)n Simple_repeat Simple_repeat 2 79 0 3 1220 396 254 97 23 chr5 83255220 83255419 -69281840 - L1_Rod LINE L1 -327 5559 5315 3 1220 26939 103 16 1 chr5 83255414 83260114 -69277145 - L1_Mus1 LINE L1 0 6567 1792 3 1220 1281 293 144 18 chr5 83260272 83261044 -69276215 - L1_Rod LINE L1 -507 5340 4472 3 1220 793 316 81 35 chr5 83261044 83261589 -69275670 + Lx9 LINE L1 6869 7438 -206 3 1220 202 160 20 20 chr5 83261608 83261659 -69275600 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1220 1109 49 0 7 chr5 83261662 83261807 -69275452 + (GAAA)n Simple_repeat Simple_repeat 4 147 0 3 1220 1461 207 61 8 chr5 83261809 83262170 -69275089 - RMER17C LTR ERVK -30 380 1 3 1220 531 272 172 19 chr5 83262216 83262478 -69274781 - RLTR40 LTR ERVK -55 762 461 3 1220 375 127 0 0 chr5 83262570 83262633 -69274626 + (CATA)n Simple_repeat Simple_repeat 4 66 0 3 1220 360 344 67 24 chr5 83262672 83262925 -69274334 - Lx9 LINE L1 -259 7385 7122 3 1220 1321 82 16 0 chr5 83262938 83263132 -69274127 - L1Md_F2 LINE L1 -19 6563 6367 3 1220 322 39 39 0 chr5 83263418 83263470 -69273789 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1220 46 0 0 0 chr5 83264030 83264076 -69273183 + AT_rich Low_complexity Low_complexity 1 46 0 3 1220 1091 82 0 0 chr5 83264085 83264220 -69273039 + B1_Mus2 SINE Alu 1 135 -12 3 1220 312 70 0 0 chr5 83264221 83264264 -69272995 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1220 198 128 0 0 chr5 83266079 83266118 -69271141 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1220 183 80 0 0 chr5 83266172 83266197 -69271062 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1220 2211 106 22 0 chr5 83266197 83266508 -69270751 - Lx3A LINE L1 -272 6709 6392 3 1220 1466 150 20 4 chr5 83266509 83266763 -69270496 + Lx3A LINE L1 6715 6972 -9 3 1220 519 243 60 48 chr5 83266997 83267265 -69269994 + L1M4c LINE L1 1970 2240 -4144 3 1220 1225 200 29 40 chr5 83267299 83267575 -69269684 + RLTR46 LTR ERVK 42 314 -6 3 1220 270 299 60 141 chr5 83267839 83268073 -69269186 + B3A SINE B2 1 215 -1 3 1220 456 185 0 27 chr5 83268131 83268242 -69269017 + L1Md_F2 LINE L1 6475 6582 0 3 1220 23 54 0 0 chr5 83268812 83268849 -69268410 + AT_rich Low_complexity Low_complexity 1 37 0 3 1220 319 348 8 42 chr5 83268878 83268998 -69268261 - RSINE1 SINE B4 -48 117 2 3 1220 392 255 18 121 chr5 83269154 83269319 -69267940 - B1_Mur2 SINE Alu 0 149 2 3 1220 207 0 0 0 chr5 83269583 83269606 -69267653 + (TAAAAA)n Simple_repeat Simple_repeat 3 25 0 3 1220 2238 166 5 197 chr5 83269642 83269876 -69267383 + L1_Mus1 LINE L1 5339 5551 -335 3 1220 4665 40 84 0 chr5 83269876 83270471 -69266788 + L1Md_F3 LINE L1 5940 6584 0 3 1220 2238 166 5 197 chr5 83270471 83270506 -69266753 + L1_Mus1 LINE L1 5552 5552 -334 3 1220 7518 70 2 5 chr5 83270506 83271491 -69265768 + L1Md_F2 LINE L1 5589 6570 -12 3 1220 6924 88 5 7 chr5 83271491 83272528 -69264731 + L1_Mus1 LINE L1 5495 6518 -49 3 1220 1313 32 9 108 chr5 83272528 83272740 -69264519 - L1Md_F3 LINE L1 0 6584 6394 3 1220 1988 30 0 4 chr5 83272740 83272966 -69264293 + L1Md_F3 LINE L1 6017 6242 -342 3 1220 345 68 0 33 chr5 83272966 83273027 -69264232 + L1_Mus1 LINE L1 6509 6567 0 3 1220 250 133 0 22 chr5 83274009 83274055 -69263204 - Lx3_Mus LINE L1 -711 6298 6254 3 1220 1738 154 10 10 chr5 83274025 83274326 -69262933 + Lx3_Mus LINE L1 5605 5905 -1104 3 1220 198 0 0 0 chr5 83274326 83274348 -69262911 + (CAA)n Simple_repeat Simple_repeat 3 24 0 3 1220 243 311 0 28 chr5 83274499 83274684 -69262575 + CT-rich Low_complexity Low_complexity 1 179 0 3 1220 239 79 26 0 chr5 83274684 83274722 -69262537 + (TATG)n Simple_repeat Simple_repeat 2 40 0 3 1220 228 210 10 6 chr5 83274722 83274785 -69262474 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 3 1220 190 116 47 0 chr5 83274894 83274937 -69262322 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 3 1220 277 265 31 0 chr5 83275548 83275646 -69261613 - Lx7 LINE L1 -1 7695 7595 3 1220 198 0 0 0 chr5 83275779 83275801 -69261458 + (TTG)n Simple_repeat Simple_repeat 1 22 0 3 1220 717 136 174 0 chr5 83275891 83276046 -69261213 - B2_Mm2 SINE B2 -1 194 13 3 1220 1362 115 33 33 chr5 83276279 83276521 -69260738 + Lx LINE L1 6411 6652 -2 4 1220 748 306 98 59 chr5 83279222 83279730 -69257529 - Lx8 LINE L1 -25 7448 6921 4 1220 3769 155 3 9 chr5 83279781 83280418 -69256841 - Lx2B LINE L1 -14 6986 6354 4 1220 359 78 0 0 chr5 83280418 83280469 -69256790 + Lx2B LINE L1 6325 6375 -625 4 1220 24 77 0 0 chr5 83281527 83281579 -69255680 + AT_rich Low_complexity Low_complexity 1 52 0 4 1220 240 271 0 0 chr5 83281885 83281933 -69255326 - Lx4B LINE L1 -441 6617 6570 4 1220 447 329 14 23 chr5 83281964 83282179 -69255080 + B3 SINE B2 4 216 0 4 1220 15437 53 1 4 chr5 83282465 83284697 -69252562 + L1Md_F3 LINE L1 3897 6120 -464 4 1220 2635 163 31 14 chr5 83284765 83285281 -69251978 - L1_Mm LINE L1 -836 5047 4523 4 1220 375 78 0 0 chr5 83286149 83286200 -69251059 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 4 1220 2047 109 49 0 chr5 83286204 83286508 -69250751 - Lx3A LINE L1 -16 6965 6647 4 1220 5126 92 8 15 chr5 83287736 83288464 -69248795 - Lx3_Mus LINE L1 0 7009 6287 4 1220 225 151 0 0 chr5 83288474 83288527 -69248732 + CT-rich Low_complexity Low_complexity 1 53 0 4 1220 1703 246 102 56 chr5 83288549 83289088 -69248171 + RMER2 LTR ERV1 1 564 -3 4 1220 1064 144 51 10 chr5 83289324 83289521 -69247738 + Lx2 LINE L1 6791 6995 -2 4 1220 234 288 142 16 chr5 83289926 83289941 -69247318 + B4A SINE B4 78 220 -72 4 1220 429 205 161 0 chr5 83289941 83290053 -69247206 + B1_Mus1 SINE Alu 12 141 -7 4 1220 348 217 0 0 chr5 83290057 83290149 -69247110 + (CTA)n Simple_repeat Simple_repeat 3 94 0 4 1220 289 259 79 36 chr5 83290300 83290440 -69246819 + L1MC3 LINE L1 6526 6671 -1114 4 1220 370 296 81 58 chr5 83290489 83290747 -69246512 + L1MC3 LINE L1 7520 7783 -2 4 1220 3274 48 2 0 chr5 83291345 83291738 -69245521 - MTA_Mm LTR MaLR 0 396 3 4 1220 425 122 0 13 chr5 83291850 83291925 -69245334 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 4 1220 23 78 0 0 chr5 83292395 83292446 -69244813 + AT_rich Low_complexity Low_complexity 1 51 0 4 1220 22 35 0 0 chr5 83292488 83292517 -69244742 + AT_rich Low_complexity Low_complexity 1 29 0 4 1220 858 228 19 66 chr5 83292628 83292947 -69244312 - Lx7 LINE L1 -9 7687 7384 4 1220 617 170 13 90 chr5 83292966 83293121 -69244138 + Lx3C LINE L1 6827 6969 -7 4 1220 943 248 100 4 chr5 83293161 83293440 -69243819 - Lx7 LINE L1 -359 7337 7032 4 1220 391 255 25 82 chr5 83293669 83293827 -69243432 + RLTR43A LTR ERVK 216 364 0 4 1220 4174 225 188 12 chr5 83293827 83295464 -69241795 - L1_Mur3 LINE L1 -241 5639 3715 4 1220 2164 79 7 13 chr5 83295467 83295775 -69241484 - L1Md_F2 LINE L1 -14 6568 6263 4 1220 1942 106 26 36 chr5 83295775 83296153 -69241106 - RLTR10A LTR ERVK 0 359 1 4 1220 1090 60 0 0 chr5 83296153 83296287 -69240972 - L1Md_F2 LINE L1 -314 6268 6135 4 1220 1456 54 0 0 chr5 83296284 83296468 -69240791 + L1Md_F2 LINE L1 5879 6062 -520 4 1220 2175 219 40 74 chr5 83296534 83297264 -69239995 - L1_Mur3 LINE L1 -2209 3671 2967 4 1220 1520 223 59 2 chr5 83297274 83297678 -69239581 - L1_Mur3 LINE L1 -6385 1343 917 4 1220 2420 129 15 10 chr5 83298276 83298674 -69238585 - Lx2 LINE L1 0 6997 6598 4 1220 371 326 30 0 chr5 83299098 83299230 -69238029 - Lx8 LINE L1 -233 7240 7105 4 1220 341 300 199 32 chr5 83299378 83299498 -69237761 + Lx7 LINE L1 5594 5750 -1946 4 1220 1523 159 6 75 chr5 83299498 83299844 -69237415 - RLTRETN_Mm LTR ERVK 0 322 1 4 1220 341 300 199 32 chr5 83299844 83299909 -69237350 + Lx7 LINE L1 5751 5809 -1887 4 1220 3124 40 25 15 chr5 83299911 83300318 -69236941 - IAPLTR2a LTR ERVK 0 411 1 4 1220 5820 50 15 8 chr5 83300320 83301059 -69236200 - IAPEz-int LTR ERVK -2 6479 5736 4 1220 2218 65 0 0 chr5 83301058 83301336 -69235923 - IAPEz-int LTR ERVK -4845 1636 1359 4 1220 3524 82 20 39 chr5 83301336 83301989 -69235270 - IAPEz-int LTR ERVK -5819 662 168 4 1220 248 302 0 0 chr5 83301989 83302042 -69235217 - RLTR27 LTR ERVK -34 275 223 4 1220 1052 90 50 119 chr5 83302042 83302243 -69235016 - IAPEz-int LTR ERVK -6286 195 9 4 1220 3146 35 25 15 chr5 83302244 83302651 -69234608 - IAPLTR2a LTR ERVK 0 411 1 4 1220 289 275 33 86 chr5 83302676 83302827 -69234432 + Lx8 LINE L1 5825 5967 -1506 4 1220 315 96 0 0 chr5 83303037 83303089 -69234170 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1220 753 329 99 5 chr5 83303091 83303473 -69233786 + Lx8 LINE L1 6198 6615 -858 4 1220 265 0 0 70 chr5 83303477 83303520 -69233739 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 4 1220 272 365 12 31 chr5 83303985 83304146 -69233113 + RSINE1 SINE B4 3 160 -5 4 1220 311 0 0 25 chr5 83304338 83304378 -69232881 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4 1220 603 195 78 8 chr5 83304382 83304511 -69232748 - B1_Mus1 SINE Alu -8 140 3 4 1220 2914 23 42 3 chr5 83304962 83305315 -69231944 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1220 55376 22 12 13 chr5 83305315 83311796 -69225463 - IAPEz-int LTR ERVK 0 6481 8 4 1220 2914 23 42 3 chr5 83311796 83312149 -69225110 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1220 826 210 0 0 chr5 83312776 83312933 -69224326 + RMER6D LTR ERVK 564 720 0 4 1220 336 262 28 18 chr5 83312941 83313050 -69224209 - Lx9 LINE L1 -1109 6535 6426 4 1220 321 89 0 0 chr5 83313362 83313407 -69223852 + (CTG)n Simple_repeat Simple_repeat 1 45 0 4 1220 232 288 0 15 chr5 83313425 83313492 -69223767 - Lx9 LINE L1 -1261 6383 6318 4 1220 2194 241 80 52 chr5 83313554 83314545 -69222714 - Lx9 LINE L1 -1538 6106 5064 4 1220 1551 180 97 24 chr5 83314979 83315069 -69222190 + RMER17C LTR ERVK 1 90 -320 4 1220 432 37 0 0 chr5 83315069 83315123 -69222136 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1220 1551 180 97 24 chr5 83315123 83315414 -69221845 + RMER17C LTR ERVK 91 409 -1 4 1220 1078 314 53 16 chr5 83315735 83316375 -69220884 + L1_Mur3 LINE L1 1847 2510 -3370 4 1220 711 309 45 4 chr5 83316372 83316619 -69220640 - Lx8 LINE L1 -851 6622 6366 4 1220 267 54 0 0 chr5 83316707 83316744 -69220515 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1220 435 134 0 0 chr5 83316758 83316840 -69220419 + (GA)n Simple_repeat Simple_repeat 1 82 0 4 1220 963 161 0 0 chr5 83316884 83317064 -69220195 + GA-rich Low_complexity Low_complexity 1 180 0 4 1220 402 340 88 16 chr5 83317116 83317310 -69219949 + Lx8 LINE L1 7085 7292 -181 4 1220 4698 48 0 2 chr5 83318309 83318888 -69218371 - L1Md_T LINE L1 -1 6581 6004 4 1220 8739 18 0 0 chr5 83318888 83319884 -69217375 - L1Md_A LINE L1 0 6582 5587 4 1220 29875 18 3 9 chr5 83319887 83324038 -69213221 - L1Md_A LINE L1 -1135 4748 632 4 1220 1951 64 8 0 chr5 83324295 83324544 -69212715 - L1Md_F2 LINE L1 -292 6290 6040 4 1220 2213 66 0 0 chr5 83324544 83324831 -69212428 + L1Md_F2 LINE L1 6284 6570 -12 4 1220 611 48 0 12 chr5 83326108 83326192 -69211067 + (TA)n Simple_repeat Simple_repeat 2 84 0 4 1220 235 399 49 21 chr5 83326537 83326780 -69210479 - MLT-int LTR MaLR -1482 253 4 4 1220 696 35 0 0 chr5 83329162 83329249 -69208010 + (TG)n Simple_repeat Simple_repeat 2 88 0 4 1220 186 43 0 0 chr5 83329575 83329598 -69207661 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 4 1220 23 0 0 0 chr5 83329961 83329984 -69207275 + AT_rich Low_complexity Low_complexity 1 23 0 4 1220 31 26 0 0 chr5 83330097 83330135 -69207124 + AT_rich Low_complexity Low_complexity 1 38 0 4 1220 1202 61 0 0 chr5 83330342 83330489 -69206770 + B1_Mus2 SINE Alu 1 147 0 4 1220 248 127 18 0 chr5 83330490 83330545 -69206714 + (TAAAAA)n Simple_repeat Simple_repeat 3 58 0 4 1220 1372 100 5 0 chr5 83331901 83332091 -69205168 + B2_Mm2 SINE B2 5 195 0 4 1220 630 336 50 17 chr5 83332128 83332428 -69204831 + Lx8 LINE L1 6930 7239 -234 4 1220 276 30 0 0 chr5 83332536 83332569 -69204690 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 4 1220 430 276 70 64 chr5 83333344 83333513 -69203746 - B3 SINE B2 -9 186 27 4 1220 1788 84 0 37 chr5 83333513 83333785 -69203474 - L1_Mus4 LINE L1 0 6636 6375 4 1220 430 276 78 60 chr5 83333785 83333810 -69203449 - B3 SINE B2 -190 26 2 4 1220 465 263 79 25 chr5 83334104 83334307 -69202952 - RLTR15 LTR ERVK -104 255 42 4 1220 387 0 0 0 chr5 83334593 83334636 -69202623 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 1220 21 0 0 0 chr5 83334748 83334769 -69202490 + AT_rich Low_complexity Low_complexity 1 21 0 4 1220 21 0 0 0 chr5 83335136 83335157 -69202102 + AT_rich Low_complexity Low_complexity 1 21 0 4 1220 21 0 0 0 chr5 83335186 83335207 -69202052 + AT_rich Low_complexity Low_complexity 1 21 0 4 1220 2064 193 11 25 chr5 83335448 83335889 -69201370 - Lx4A LINE L1 -777 6281 5847 4 1220 35434 35 0 0 chr5 83335890 83341588 -69195671 + L1Md_T LINE L1 1 5589 -297 4 1220 8939 7 0 0 chr5 83341588 83342584 -69194675 + L1Md_T LINE L1 5590 6585 0 4 1220 5913 145 37 26 chr5 83342600 83342822 -69194437 - Lx4A LINE L1 -36 5841 5621 4 1220 576 0 0 0 chr5 83342822 83342886 -69194373 + (TA)n Simple_repeat Simple_repeat 2 65 0 4 1220 5913 145 37 26 chr5 83342886 83343776 -69193483 - Lx4A LINE L1 -257 5620 4717 4 1220 963 86 7 21 chr5 83343796 83343939 -69193320 - B1_Mus1 SINE Alu 0 148 8 4 1220 2504 136 30 24 chr5 83343946 83344260 -69192999 - Lx4A LINE L1 -2915 2962 2647 4 1220 3544 115 0 24 chr5 83344260 83344804 -69192455 - L1Md_F2 LINE L1 -2 6580 6050 4 1220 2504 136 30 24 chr5 83344804 83344957 -69192302 - Lx4A LINE L1 -3231 2646 2492 4 1220 1897 151 17 0 chr5 83344975 83345319 -69191940 + L1_Mur2 LINE L1 1681 2030 -3847 4 1220 540 288 7 52 chr5 83345319 83345473 -69191786 + MTC LTR MaLR 275 421 0 4 1220 21 57 0 0 chr5 83345748 83345783 -69191476 + AT_rich Low_complexity Low_complexity 1 35 0 4 1220 22 35 0 0 chr5 83346019 83346048 -69191211 + AT_rich Low_complexity Low_complexity 1 29 0 4 1220 21 36 0 0 chr5 83346181 83346209 -69191050 + AT_rich Low_complexity Low_complexity 1 28 0 4 1220 229 271 32 48 chr5 83347799 83347828 -69189431 + MT2B2 LTR ERVL 232 259 -325 4 1220 325 333 35 26 chr5 83347828 83347942 -69189317 + PB1D10 SINE Alu 3 117 0 4 1220 219 128 0 0 chr5 83348480 83348502 -69188757 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1220 558 0 0 0 chr5 83348502 83348564 -69188695 + (CAAAC)n Simple_repeat Simple_repeat 3 64 0 4 1220 219 128 0 0 chr5 83348564 83348588 -69188671 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1220 3409 158 105 39 chr5 83348867 83349839 -69187420 + L1_Mur1 LINE L1 9 1337 -5645 4 1220 3725 112 13 141 chr5 83349839 83350156 -69187103 - RMER17A LTR ERVK -6 745 426 4 1220 5725 45 6 3 chr5 83350156 83350871 -69186388 + L1Md_F2 LINE L1 5866 6582 0 4 1220 3725 119 17 135 chr5 83350871 83351418 -69185841 - RMER17A LTR ERVK -326 425 1 4 1220 2354 114 2 29 chr5 83351418 83351826 -69185433 + L1_Mur1 LINE L1 1362 1758 -4128 4 1220 4892 106 35 0 chr5 83351826 83352536 -69184723 + Lx3_Mus LINE L1 6259 6993 -16 4 1220 226 325 157 0 chr5 83353046 83353129 -69184130 + B1F SINE Alu 2 97 -52 4 1220 991 124 7 0 chr5 83354600 83354745 -69182514 + B1_Mus2 SINE Alu 2 147 0 4 1220 243 0 0 0 chr5 83354748 83354775 -69182484 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1220 341 208 41 16 chr5 83354781 83354903 -69182356 - Lx9 LINE L1 -2 7642 7518 4 1220 21 36 0 0 chr5 83355213 83355241 -69182018 + AT_rich Low_complexity Low_complexity 1 28 0 4 1220 220 86 32 79 chr5 83355730 83355793 -69181466 + (TTATA)n Simple_repeat Simple_repeat 4 63 0 4 1220 755 272 141 33 chr5 83355832 83356136 -69181123 + Lx8 LINE L1 6209 6545 -928 5 1220 5843 8 0 0 chr5 83356135 83356794 -69180465 + L1Md_T LINE L1 4928 5586 -297 5 1220 8082 54 0 0 chr5 83356794 83357790 -69179469 + L1Md_T LINE L1 5587 6582 0 5 1220 288 0 0 0 chr5 83358275 83358307 -69178952 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5 1220 1370 112 35 18 chr5 83358534 83358762 -69178497 + L1_Mus4 LINE L1 6404 6635 -1 5 1220 225 0 0 0 chr5 83358767 83358792 -69178467 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5 1220 1635 60 5 5 chr5 83359374 83359590 -69177669 - L1Md_F2 LINE L1 -11 6571 6356 5 1220 21 36 0 0 chr5 83359853 83359881 -69177378 + AT_rich Low_complexity Low_complexity 1 28 0 5 1220 24 0 0 0 chr5 83360679 83360703 -69176556 + AT_rich Low_complexity Low_complexity 1 24 0 5 1220 26 50 0 0 chr5 83360756 83360796 -69176463 + AT_rich Low_complexity Low_complexity 1 40 0 5 1221 314 343 44 11 chr5 83363234 83363414 -69173845 - Lx8 LINE L1 -975 6498 6313 5 1221 28 0 0 0 chr5 83363418 83363446 -69173813 + AT_rich Low_complexity Low_complexity 1 28 0 5 1221 405 39 0 0 chr5 83363467 83363518 -69173741 + (TC)n Simple_repeat Simple_repeat 2 52 0 5 1221 573 342 106 22 chr5 83363698 83364018 -69173241 - Lx8 LINE L1 -158 7315 6969 5 1221 820 147 40 0 chr5 83364068 83364218 -69173041 + Lx2A LINE L1 6813 6968 -40 5 1221 359 161 12 12 chr5 83364219 83364301 -69172958 + Lx2A LINE L1 6925 7006 -2 5 1221 1209 344 75 29 chr5 83364302 83364930 -69172329 - Lx8 LINE L1 -585 6888 6232 5 1221 30 0 0 0 chr5 83365959 83365989 -69171270 + AT_rich Low_complexity Low_complexity 1 30 0 5 1221 530 325 36 43 chr5 83366008 83366288 -69170971 + B4A SINE B4 1 278 -14 5 1221 297 128 0 0 chr5 83366345 83366392 -69170867 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1221 387 0 0 0 chr5 83366392 83366434 -69170825 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1221 578 340 19 5 chr5 83366718 83366928 -69170331 - B3 SINE B2 -2 214 2 5 1221 29 47 0 0 chr5 83367431 83367474 -69169785 + AT_rich Low_complexity Low_complexity 1 43 0 5 1221 492 281 49 28 chr5 83368430 83368573 -69168686 - B3A SINE B2 -50 148 3 5 1221 328 365 64 99 chr5 83369403 83369686 -69167573 - B4 SINE B4 -16 276 4 5 1221 591 293 47 50 chr5 83371643 83371963 -69165296 - MYSERV-int LTR ERVK -1767 4783 4465 5 1221 866 242 90 29 chr5 83372000 83372250 -69165009 - MYSERV6-int LTR ERVK -7068 1891 1631 5 1221 189 0 0 0 chr5 83372250 83372271 -69164988 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5 1221 866 242 90 29 chr5 83372271 83372331 -69164928 - MYSERV6-int LTR ERVK -7329 1630 1562 5 1221 626 167 81 29 chr5 83372342 83372478 -69164781 - RMER17C-int LTR ERVK -3093 145 3 5 1221 405 161 11 44 chr5 83372481 83372572 -69164687 - RMER17C LTR ERVK 0 410 323 5 1221 1428 106 14 0 chr5 83372776 83372983 -69164276 - L1_Mus1 LINE L1 -433 6134 5925 5 1221 2488 79 29 0 chr5 83372983 83373324 -69163935 + L1_Mus1 LINE L1 6217 6567 0 5 1221 1318 147 60 142 chr5 83373345 83373780 -69163479 - RMER17C LTR ERVK -11 399 1 5 1221 23 0 0 0 chr5 83373787 83373810 -69163449 + AT_rich Low_complexity Low_complexity 1 23 0 5 1221 189 0 0 0 chr5 83373814 83373835 -69163424 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1221 587 194 39 31 chr5 83373840 83373968 -69163291 - MYSERV6-int LTR ERVK -7637 1322 1194 5 1221 401 317 10 0 chr5 83375010 83375111 -69162148 + LTR33 LTR ERVL 1 102 -413 5 1221 25 0 0 0 chr5 83375741 83375766 -69161493 + AT_rich Low_complexity Low_complexity 1 25 0 5 1221 700 249 23 46 chr5 83375913 83376132 -69161127 + Lx7 LINE L1 5639 5852 -1844 5 1221 321 197 0 0 chr5 83376143 83376209 -69161050 + CT-rich Low_complexity Low_complexity 2 67 0 5 1221 715 181 178 15 chr5 83376228 83376430 -69160829 - RMER4B LTR ERVK -338 247 13 5 1221 41 48 0 0 chr5 83376434 83376496 -69160763 + AT_rich Low_complexity Low_complexity 1 62 0 5 1221 430 233 51 72 chr5 83376504 83376740 -69160519 + Lx7 LINE L1 7356 7586 -110 5 1221 687 57 0 0 chr5 83377447 83377535 -69159724 + (GAA)n Simple_repeat Simple_repeat 3 90 0 5 1221 1161 177 139 11 chr5 83377553 83377827 -69159432 + Lx3C LINE L1 6666 6974 -2 5 1221 399 41 0 0 chr5 83379350 83379399 -69157860 + (CATA)n Simple_repeat Simple_repeat 4 52 0 5 1221 374 405 21 11 chr5 83379421 83379608 -69157651 + B4 SINE B4 81 269 -23 5 1221 392 257 45 29 chr5 83379610 83379865 -69157394 + Lx7 LINE L1 5616 5907 -396 5 1221 1699 293 161 9 chr5 83379863 83380627 -69156632 + Lx8 LINE L1 6260 7139 -334 5 1221 5937 137 17 10 chr5 83380983 83381942 -69155317 - Lx LINE L1 -3 6651 5702 5 1221 270 376 114 28 chr5 83382909 83383338 -69153921 - MT2A LTR ERVL -5 528 63 5 1221 1636 244 75 26 chr5 83383509 83383933 -69153326 + RLTR25B LTR ERVK 2 446 -582 5 1221 233 245 0 0 chr5 83386385 83386438 -69150821 + (TA)n Simple_repeat Simple_repeat 1 53 0 5 1221 276 373 89 71 chr5 83386982 83387545 -69149714 + BLACKJACK DNA AcHobo 376 948 -1996 5 1221 22 35 0 0 chr5 83388095 83388124 -69149135 + AT_rich Low_complexity Low_complexity 1 29 0 5 1221 518 335 59 15 chr5 83388905 83389178 -69148081 - RMER15 LTR ERVL -17 558 274 5 1221 805 362 42 7 chr5 83389526 83389929 -69147330 + Lx8 LINE L1 6908 7324 -149 5 1221 2663 144 34 42 chr5 83390198 83390676 -69146583 - Lx LINE L1 -10 6644 6171 5 1221 180 0 0 0 chr5 83391304 83391324 -69145935 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1221 423 0 0 0 chr5 83391691 83391738 -69145521 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1221 234 367 44 70 chr5 83392542 83392700 -69144559 + RSINE1 SINE B4 12 165 0 5 1221 239 281 0 0 chr5 83392703 83392760 -69144499 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1221 24 0 0 0 chr5 83392760 83392784 -69144475 + AT_rich Low_complexity Low_complexity 1 24 0 5 1221 960 89 74 0 chr5 83393050 83393185 -69144074 + B1_Mm SINE Alu 2 146 -1 5 1221 435 150 0 12 chr5 83393886 83393967 -69143292 + RLTR9C LTR ERVK 1 80 -313 5 1221 1854 269 55 25 chr5 83393973 83394487 -69142772 + Lx5 LINE L1 6517 7045 -5 5 1221 24 32 0 0 chr5 83394683 83394714 -69142545 + AT_rich Low_complexity Low_complexity 1 31 0 5 1221 445 360 39 10 chr5 83395930 83396135 -69141124 + L2 LINE L2 2752 2962 -457 5 1221 288 148 30 126 chr5 83396584 83396669 -69140590 + B1_Mur4 SINE Alu 6 85 -65 5 1221 438 276 15 52 chr5 83396673 83396807 -69140452 - Lx7 LINE L1 -1058 6638 6510 5 1221 1689 246 47 25 chr5 83396812 83397220 -69140039 + MTC LTR MaLR 5 421 0 5 1221 1209 218 67 17 chr5 83397219 83397518 -69139741 + MTC-int LTR MaLR 2 315 -943 5 1221 23 78 0 0 chr5 83398166 83398217 -69139042 + AT_rich Low_complexity Low_complexity 1 51 0 5 1221 339 65 0 0 chr5 83398314 83398360 -69138899 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1221 383 298 74 41 chr5 83398374 83398643 -69138616 - B4A SINE B4 -14 278 1 5 1221 2802 187 15 0 chr5 83400181 83400706 -69136553 - L1_Mur2 LINE L1 -8 5869 5337 5 1221 627 184 21 21 chr5 83400740 83400884 -69136375 + Lx5 LINE L1 6285 6428 -622 5 1221 454 357 93 0 chr5 83401675 83401815 -69135444 + B3A SINE B2 7 159 -39 5 1221 285 51 0 0 chr5 83401818 83401857 -69135402 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1221 527 260 44 92 chr5 83401922 83402179 -69135080 - RMER12 LTR ERVK -175 1397 1003 5 1221 360 94 0 0 chr5 83402179 83402232 -69135027 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1221 508 265 0 0 chr5 83402232 83402334 -69134925 - RMER12 LTR ERVK -434 888 787 5 1221 30568 99 10 10 chr5 83402370 83407721 -69129538 + L1Md_F2 LINE L1 238 5585 -298 5 1221 7334 77 5 19 chr5 83407722 83408731 -69128528 + L1Md_F2 LINE L1 5587 6581 -1 5 1221 28 29 0 0 chr5 83408869 83408904 -69128355 + AT_rich Low_complexity Low_complexity 1 35 0 5 1221 405 274 96 0 chr5 83408919 83409054 -69128205 + Lx6 LINE L1 7273 7420 -40 5 1221 525 349 43 4 chr5 83409351 83409604 -69127655 + Lx8 LINE L1 6573 6835 -638 5 1221 1366 153 23 46 chr5 83409604 83409712 -69127547 - RMER19B LTR ERVK -130 772 672 5 1221 997 101 7 0 chr5 83409712 83409850 -69127409 + B1_Mm SINE Alu 1 139 -8 5 1221 414 0 0 0 chr5 83409850 83409896 -69127363 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1221 549 0 0 0 chr5 83409896 83409956 -69127303 + (TC)n Simple_repeat Simple_repeat 1 61 0 5 1221 1366 153 23 46 chr5 83409956 83410106 -69127153 - RMER19B LTR ERVK -231 671 520 5 1221 668 164 49 0 chr5 83410099 83410221 -69127038 + RMER19B LTR ERVK 764 891 -11 5 1221 816 145 0 0 chr5 83410255 83410400 -69126859 + (GA)n Simple_repeat Simple_repeat 2 146 0 5 1221 594 28 0 0 chr5 83410401 83410473 -69126786 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 5 1221 286 370 93 39 chr5 83410583 83411024 -69126235 + Lx8 LINE L1 6999 7463 -10 5 1221 749 84 48 14 chr5 83412454 83412599 -69124660 + RMER17B LTR ERVK 311 460 -498 5 1221 490 343 11 33 chr5 83412987 83413168 -69124091 + ORR1E LTR MaLR 1 177 -182 5 1221 414 0 0 0 chr5 83413833 83413879 -69123380 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1221 396 0 0 0 chr5 83414267 83414311 -69122948 + (CAA)n Simple_repeat Simple_repeat 1 44 0 5 1221 549 0 0 0 chr5 83414311 83414372 -69122887 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1221 4751 126 8 6 chr5 83414413 83415139 -69122120 - Lx LINE L1 0 6654 5927 5 1221 278 216 0 0 chr5 83415140 83415191 -69122068 - L1_Mur2 LINE L1 -640 5237 5187 5 1221 1743 127 110 72 chr5 83415197 83415486 -69121773 + RLTR9C LTR ERVK 6 304 -89 5 1221 621 0 0 0 chr5 83415486 83415555 -69121704 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 1221 1743 127 110 72 chr5 83415555 83415639 -69121620 + RLTR9C LTR ERVK 305 392 -1 5 1221 273 322 0 0 chr5 83415705 83415795 -69121464 - BC1_Mm scRNA scRNA -59 93 4 5 1221 1545 219 21 48 chr5 83415846 83416240 -69121019 - RLTR24 LTR ERV1 0 529 148 5 1221 1053 86 0 28 chr5 83416240 83416383 -69120876 + B1_Mus2 SINE Alu 1 139 -8 5 1221 616 245 117 24 chr5 83416383 83416516 -69120743 - RLTR24 LTR ERV1 -320 209 63 5 1221 24 53 0 0 chr5 83416751 83416789 -69120470 + AT_rich Low_complexity Low_complexity 1 38 0 5 1221 3353 38 0 0 chr5 83416918 83417314 -69119945 - MTA_Mm LTR MaLR 0 396 1 5 1221 28 0 0 0 chr5 83417396 83417424 -69119835 + AT_rich Low_complexity Low_complexity 1 28 0 5 1221 49 71 0 0 chr5 83419089 83419187 -69118072 + AT_rich Low_complexity Low_complexity 1 98 0 6 1221 464 305 120 57 chr5 83419228 83419812 -69117447 - L1MA6 LINE L1 -30 6270 5650 6 1221 216 158 0 0 chr5 83419852 83419890 -69117369 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6 1221 549 30 0 0 chr5 83420162 83420229 -69117030 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 6 1221 279 0 0 0 chr5 83420238 83420269 -69116990 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1221 984 156 67 0 chr5 83420283 83420463 -69116796 - B2_Mm2 SINE B2 -3 192 1 6 1221 1448 202 0 11 chr5 83420486 83420766 -69116493 - Lx2 LINE L1 -11 6986 6710 6 1221 2341 189 145 26 chr5 83420930 83421545 -69115714 - RMER6C LTR ERVK 0 690 3 6 1221 1371 291 104 38 chr5 83421592 83422754 -69114505 - L1MA6 LINE L1 -1182 4961 3683 6 1221 2065 256 82 12 chr5 83422916 83423512 -69113747 - Lx9 LINE L1 -327 7317 6680 6 1221 253 294 54 0 chr5 83423578 83423670 -69113589 - Lx9 LINE L1 -1235 6409 6313 6 1221 476 110 0 0 chr5 83423773 83423855 -69113404 - L1Md_F2 LINE L1 0 6582 6501 6 1221 998 239 22 51 chr5 83423857 83424170 -69113089 - Lx9 LINE L1 -13 5834 5531 6 1221 495 0 0 0 chr5 83424297 83424352 -69112907 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 1221 1137 37 0 0 chr5 83424352 83424488 -69112771 - B1_Mm SINE Alu -10 137 2 6 1221 547 325 122 4 chr5 83425850 83426088 -69111171 - MTD LTR MaLR -136 283 18 6 1221 444 67 0 0 chr5 83427318 83427378 -69109881 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1221 501 273 0 32 chr5 83427481 83427606 -69109653 + B1_Mur2 SINE Alu 9 129 -20 6 1221 234 0 0 0 chr5 83428616 83428642 -69108617 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 6 1221 23 0 0 0 chr5 83428943 83428966 -69108293 + AT_rich Low_complexity Low_complexity 1 23 0 6 1221 991 297 87 82 chr5 83430563 83430729 -69106530 - RLTR18 LTR ERVK 0 616 453 6 1221 303 28 0 0 chr5 83430729 83430765 -69106494 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1221 991 297 87 82 chr5 83430765 83431211 -69106048 - RLTR18 LTR ERVK -164 452 2 6 1221 400 254 47 29 chr5 83431469 83431614 -69105645 - B1_Mm SINE Alu -5 144 1 6 1221 3181 194 60 12 chr5 83432142 83432491 -69104768 - RMER6D LTR ERVK -4 716 364 6 1221 404 37 0 18 chr5 83432491 83432546 -69104713 + (CCA)n Simple_repeat Simple_repeat 3 56 0 6 1221 3181 194 60 12 chr5 83432546 83432879 -69104380 - RMER6D LTR ERVK -357 363 2 6 1221 299 335 18 12 chr5 83433213 83433231 -69104028 - RSINE1 SINE B4 0 165 148 6 1221 615 48 0 0 chr5 83433231 83433314 -69103945 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 6 1221 299 335 18 12 chr5 83433314 83433458 -69103801 - RSINE1 SINE B4 -18 147 3 6 1221 211 152 59 29 chr5 83433691 83433759 -69103500 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 6 1221 1121 222 149 9 chr5 83434885 83435004 -69102255 - Lx9 LINE L1 -1 7643 7495 6 1221 405 0 0 0 chr5 83435004 83435049 -69102210 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1221 1121 222 149 9 chr5 83435049 83435279 -69101980 - Lx9 LINE L1 -150 7494 7246 6 1221 421 158 0 0 chr5 83435285 83435361 -69101898 + Lx9 LINE L1 6895 6970 -674 6 1221 26 30 0 0 chr5 83435559 83435592 -69101667 + AT_rich Low_complexity Low_complexity 1 33 0 6 1221 415 205 49 0 chr5 83435927 83436049 -69101210 - Lx9 LINE L1 -3 7641 7514 6 1221 270 95 0 0 chr5 83436054 83436096 -69101163 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1221 24 32 0 0 chr5 83436913 83436944 -69100315 + AT_rich Low_complexity Low_complexity 1 31 0 6 1221 353 231 100 18 chr5 83438674 83438784 -69098475 - L1_Mur1 LINE L1 -6840 142 24 6 1221 187 31 62 0 chr5 83438857 83438889 -69098370 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 6 1221 533 322 23 0 chr5 83439018 83439189 -69098070 - B3 SINE B2 -37 179 5 6 1221 1090 96 0 7 chr5 83439966 83440113 -69097146 + B1_Mus2 SINE Alu 2 147 0 6 1221 195 42 0 0 chr5 83440113 83440137 -69097122 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1221 27 49 0 0 chr5 83440269 83440310 -69096949 + AT_rich Low_complexity Low_complexity 1 41 0 6 1221 324 290 108 20 chr5 83440351 83440382 -69096877 + MTE-int LTR MaLR 1197 1226 -354 6 1221 312 91 0 0 chr5 83440382 83440426 -69096833 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 1221 324 290 108 20 chr5 83440426 83440542 -69096717 + MTE-int LTR MaLR 1227 1357 -223 6 1221 228 247 82 0 chr5 83440763 83440836 -69096423 + ORR1D-int LTR MaLR 1188 1266 -104 6 1221 27 49 0 0 chr5 83440836 83440877 -69096382 + AT_rich Low_complexity Low_complexity 1 41 0 6 1221 254 164 33 0 chr5 83440887 83440948 -69096311 + T-rich Low_complexity Low_complexity 4 66 0 6 1221 1567 191 27 3 chr5 83440952 83441283 -69095976 - Lx3A LINE L1 -4 6969 6631 6 1221 1685 185 91 11 chr5 83441283 83441644 -69095615 - Lx3A LINE L1 -528 6453 6064 6 1221 3584 99 0 0 chr5 83441649 83442132 -69095127 + L1_Mur1 LINE L1 5354 5836 -50 6 1221 34 89 0 0 chr5 83442233 83442323 -69094936 + AT_rich Low_complexity Low_complexity 1 90 0 6 1221 22 35 0 0 chr5 83442352 83442381 -69094878 + AT_rich Low_complexity Low_complexity 1 29 0 6 1221 1009 274 77 41 chr5 83442631 83442987 -69094272 + MTE2a LTR MaLR 36 410 -9 6 1221 360 284 0 0 chr5 83443404 83443499 -69093760 - Lx6 LINE L1 -187 7273 7179 6 1221 661 322 24 24 chr5 83443813 83444023 -69093236 - B3 SINE B2 -5 211 2 6 1221 288 0 0 0 chr5 83444453 83444485 -69092774 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1221 28 79 0 0 chr5 83445383 83445446 -69091813 + AT_rich Low_complexity Low_complexity 1 63 0 6 1221 25 31 0 0 chr5 83445467 83445499 -69091760 + AT_rich Low_complexity Low_complexity 1 32 0 6 1221 1466 301 95 35 chr5 83445838 83446469 -69090790 - Lx7 LINE L1 -697 6999 6331 6 1221 2066 139 40 3 chr5 83446473 83446797 -69090462 + MTB_Mm LTR MaLR 72 407 0 6 1221 626 319 124 12 chr5 83446797 83447025 -69090234 - MTD LTR MaLR -113 306 50 6 1221 836 106 8 0 chr5 83447035 83447158 -69090101 - Lx LINE L1 -674 5980 5857 6 1221 22 80 0 0 chr5 83447158 83447208 -69090051 + AT_rich Low_complexity Low_complexity 1 50 0 6 1221 4599 67 2 2 chr5 83447214 83447798 -69089461 - L1_Mus1 LINE L1 -19 6548 5965 6 1221 3595 157 23 2 chr5 83447813 83448433 -69088826 + Lx LINE L1 6022 6654 0 6 1221 2166 87 60 17 chr5 83450184 83450536 -69086723 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1221 55061 29 9 4 chr5 83450536 83456977 -69080282 + IAPEz-int LTR ERVK 4 6475 -6 6 1221 2166 87 60 17 chr5 83456979 83457331 -69079928 + IAPLTR1_Mm LTR ERVK 1 367 0 6 1221 21 36 0 0 chr5 83458619 83458647 -69078612 + AT_rich Low_complexity Low_complexity 1 28 0 6 1221 1550 158 26 113 chr5 83458662 83459041 -69078218 - ORR1B1 LTR MaLR -8 386 41 6 1221 8639 84 18 5 chr5 83459396 83460661 -69076598 - Lx3_Mus LINE L1 -1069 5940 4665 6 1221 6388 118 38 2 chr5 83460661 83461662 -69075597 + Lx3_Mus LINE L1 5973 7009 0 6 1221 635 297 111 39 chr5 83462196 83462627 -69074632 + L1_Mur3 LINE L1 5358 5819 -61 6 1221 393 104 0 38 chr5 83462638 83462718 -69074541 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 1221 3566 140 101 13 chr5 83463020 83463644 -69073615 + Lx2A LINE L1 6324 7002 -6 6 1221 236 130 22 0 chr5 83463724 83463770 -69073489 + CT-rich Low_complexity Low_complexity 2 48 0 6 1221 251 233 27 27 chr5 83464408 83464483 -69072776 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 6 1221 21 0 0 0 chr5 83464904 83464925 -69072334 + AT_rich Low_complexity Low_complexity 1 21 0 6 1221 29 28 0 0 chr5 83464976 83465012 -69072247 + AT_rich Low_complexity Low_complexity 1 36 0 6 1221 7935 59 4 0 chr5 83465591 83466580 -69070679 - L1Md_F2 LINE L1 -3 6579 5587 6 1221 231 245 0 0 chr5 83466966 83467015 -69070244 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 6 1221 25 75 0 0 chr5 83467182 83467235 -69070024 + AT_rich Low_complexity Low_complexity 1 53 0 6 1221 376 203 36 73 chr5 83467881 83468046 -69069213 + Lx9 LINE L1 7486 7644 0 6 1221 7413 60 16 2 chr5 83468348 83469348 -69067911 - L1Md_F2 LINE L1 -33 6549 5536 6 1221 645 118 25 0 chr5 83469497 83469616 -69067643 + (TCC)n Simple_repeat Simple_repeat 2 123 0 6 1221 1073 219 76 33 chr5 83470092 83470460 -69066799 + ORR1C2 LTR MaLR 1 384 0 6 1221 30 27 0 0 chr5 83470868 83470905 -69066354 + AT_rich Low_complexity Low_complexity 1 37 0 6 1221 21 0 0 0 chr5 83470945 83470966 -69066293 + AT_rich Low_complexity Low_complexity 1 21 0 6 1221 186 43 0 0 chr5 83471081 83471104 -69066155 + (CTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1221 313 30 0 83 chr5 83471414 83471486 -69065773 + (TTTTG)n Simple_repeat Simple_repeat 4 69 0 6 1221 550 298 22 19 chr5 83472181 83472394 -69064865 - B3A SINE B2 -3 213 3 6 1221 971 56 0 0 chr5 83472506 83472632 -69064627 + B1_Mus2 SINE Alu 13 138 -9 6 1221 246 32 0 0 chr5 83472632 83472663 -69064596 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1221 366 338 47 43 chr5 83472818 83473096 -69064163 - L1MC LINE L1 -3649 2497 2219 6 1221 3420 35 0 0 chr5 83473118 83473514 -69063745 + MTA_Mm LTR MaLR 1 396 0 6 1221 231 88 0 0 chr5 83473684 83473718 -69063541 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 6 1221 286 369 19 19 chr5 83473718 83473878 -69063381 - Lx8 LINE L1 -243 7230 7071 6 1221 4120 235 29 14 chr5 83474057 83474999 -69062260 + Lx5 LINE L1 6084 7039 -11 6 1221 215 73 0 47 chr5 83475037 83475080 -69062179 + (CAAAAA)n Simple_repeat Simple_repeat 6 46 0 6 1221 277 292 71 78 chr5 83475884 83476025 -69061234 + MLT1B LTR MaLR 236 375 -15 6 1221 22 0 0 0 chr5 83476712 83476734 -69060525 + AT_rich Low_complexity Low_complexity 1 22 0 6 1221 531 290 196 10 chr5 83476923 83477215 -69060044 + MTD LTR MaLR 50 388 -12 6 1221 429 20 0 0 chr5 83477309 83477359 -69059900 + (TTA)n Simple_repeat Simple_repeat 3 52 0 6 1221 352 165 179 28 chr5 83478335 83478441 -69058818 - RMER1C Other Other -14 1328 1207 6 1221 236 130 22 0 chr5 83478705 83478751 -69058508 + CT-rich Low_complexity Low_complexity 2 48 0 6 1221 1009 136 0 7 chr5 83478756 83478904 -69058355 - B1_Mus1 SINE Alu 0 148 2 6 1221 896 203 0 17 chr5 83479296 83479476 -69057783 - ORR1B2 LTR MaLR 0 367 191 6 1221 683 351 11 36 chr5 83479631 83479738 -69057521 - MTE-int LTR MaLR -1207 373 269 6 1221 1934 217 67 19 chr5 83479738 83480273 -69056986 - RLTR31_Mm LTR ERVK 0 561 1 7 1221 683 275 70 70 chr5 83480273 83480466 -69056793 - MTE-int LTR MaLR -1312 268 47 6 1221 648 311 142 24 chr5 83480521 83480860 -69056399 - MTE2a LTR MaLR 0 379 1 7 1221 315 320 62 0 chr5 83480952 83481080 -69056179 + MLT1D LTR MaLR 46 181 -324 7 1221 204 97 0 0 chr5 83482711 83482742 -69054517 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1221 330 26 0 0 chr5 83482742 83482781 -69054478 + (CATA)n Simple_repeat Simple_repeat 2 40 0 7 1221 729 200 0 28 chr5 83482945 83483089 -69054170 + Lx5 LINE L1 6286 6425 -625 7 1221 1819 174 16 9 chr5 83483093 83483412 -69053847 - ORR1A4 LTR MaLR -8 321 1 7 1221 1947 254 50 4 chr5 83483413 83483896 -69053363 + Lx5 LINE L1 6422 6926 -124 7 1221 301 245 14 24 chr5 83484440 83484563 -69052696 - Lx6 LINE L1 -9 7451 7357 7 1221 478 320 47 28 chr5 83484960 83485172 -69052087 + B3 SINE B2 1 216 0 7 1221 23551 84 11 60 chr5 83485588 83489300 -69047959 - L1Md_F2 LINE L1 -428 5455 1929 7 1221 943 100 0 0 chr5 83489291 83489421 -69047838 + L1Md_F2 LINE L1 5456 5585 -298 7 1221 7090 81 24 6 chr5 83489422 83490398 -69046861 + L1Md_F2 LINE L1 5587 6579 -3 7 1221 202 315 0 0 chr5 83490568 83490622 -69046637 + GA-rich Low_complexity Low_complexity 3 56 0 7 1221 1482 182 21 25 chr5 83490784 83491110 -69046149 + ORR1A4 LTR MaLR 1 325 -4 7 1221 252 122 0 0 chr5 83491696 83491737 -69045522 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1221 21 0 0 0 chr5 83492561 83492582 -69044677 + AT_rich Low_complexity Low_complexity 1 21 0 7 1222 300 386 40 20 chr5 83493240 83493388 -69043871 - ORR1E LTR MaLR -193 166 16 7 1222 26 30 0 0 chr5 83493675 83493708 -69043551 + AT_rich Low_complexity Low_complexity 1 33 0 7 1222 806 236 187 9 chr5 83494145 83494487 -69042772 - Lx9 LINE L1 -2 7642 7240 7 1222 586 109 20 0 chr5 83494507 83494608 -69042651 + (GAA)n Simple_repeat Simple_repeat 2 104 0 7 1222 304 245 59 0 chr5 83494608 83494710 -69042549 + Lx9 LINE L1 7012 7119 -525 7 1222 608 220 68 14 chr5 83494781 83494943 -69042316 - MTD LTR MaLR 0 419 250 7 1222 329 209 33 60 chr5 83494950 83495133 -69042126 + (TA)n Simple_repeat Simple_repeat 2 179 0 7 1222 1199 267 54 18 chr5 83495283 83495615 -69041644 + MTD LTR MaLR 76 419 0 7 1222 23 33 0 0 chr5 83495974 83496004 -69041255 + AT_rich Low_complexity Low_complexity 1 30 0 7 1222 27 49 0 0 chr5 83496245 83496286 -69040973 + AT_rich Low_complexity Low_complexity 1 41 0 7 1222 255 152 0 0 chr5 83496303 83496349 -69040910 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1222 21 0 0 0 chr5 83497237 83497258 -69040001 + AT_rich Low_complexity Low_complexity 1 21 0 7 1222 825 83 0 0 chr5 83497947 83498079 -69039180 + (GA)n Simple_repeat Simple_repeat 1 132 0 7 1222 728 304 40 28 chr5 83498596 83498917 -69038342 - Lx9 LINE L1 -134 7510 7186 7 1222 293 307 37 56 chr5 83498996 83499158 -69038101 - ERVL-E-int LTR ERVL -295 5372 5214 7 1222 1130 192 26 39 chr5 83499345 83499524 -69037735 + ORR1B1 LTR MaLR 12 188 -206 7 1222 3171 33 125 2 chr5 83499524 83499947 -69037312 + IAPLTR2_Mm LTR ERVK 1 475 0 7 1222 1130 192 26 39 chr5 83499947 83500000 -69037259 + ORR1B1 LTR MaLR 189 241 -153 7 1222 647 157 0 0 chr5 83500000 83500102 -69037157 + ORR1A4 LTR MaLR 242 343 -51 1 1222 899 95 0 7 chr5 83500119 83500267 -69036992 + L1_Mus4 LINE L1 6489 6635 -1 2 1222 298 170 0 0 chr5 83500292 83500339 -69036920 + ORR1A4 LTR MaLR 324 370 -8 1 1222 4271 232 106 85 chr5 83500352 83501795 -69035464 + ORR1A4-int LTR MaLR 37 1509 0 1 1222 941 211 115 74 chr5 83501796 83502132 -69035127 + ORR1A4 LTR MaLR 2 361 -13 1 1222 320 405 43 0 chr5 83502223 83502477 -69034782 - ERVL-int LTR ERVL -3577 2180 1916 3 1222 271 296 44 88 chr5 83502601 83502738 -69034521 + MIRm SINE MIR 23 153 -123 4 1222 1300 143 143 0 chr5 83504081 83504333 -69032926 + RLTR33 LTR ERVK 348 635 -43 5 1222 263 368 110 19 chr5 83505045 83505200 -69032059 - MLT1D LTR MaLR -109 396 228 6 1222 529 350 14 73 chr5 83505235 83505608 -69031651 - ERVL-B4-int LTR ERVL -1777 3937 3587 7 1222 2635 158 4 4 chr5 83505727 83506190 -69031069 - Lx2 LINE L1 0 6997 6535 8 1222 298 372 13 20 chr5 83506222 83506373 -69030886 - ERVL-B4-int LTR ERVL -2436 3321 3172 7 1222 509 340 49 21 chr5 83507208 83507496 -69029763 - ERVL-B4-int LTR ERVL -5206 508 213 9 1222 25 51 0 0 chr5 83507568 83507607 -69029652 + AT_rich Low_complexity Low_complexity 1 39 0 1 1222 1152 82 0 0 chr5 83507792 83508040 -69029219 + (CA)n Simple_repeat Simple_repeat 1 248 0 1 1222 341 252 20 29 chr5 83508062 83508164 -69029095 - Lx7 LINE L1 -397 7299 7199 1 1222 366 80 0 0 chr5 83508210 83508260 -69028999 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 1 1222 887 269 29 12 chr5 83508265 83508510 -69028749 - Lx6 LINE L1 -169 7291 7043 1 1222 1090 191 49 165 chr5 83510133 83510503 -69026756 + ORR1A4 LTR MaLR 1 327 -2 1 1222 225 278 0 32 chr5 83511226 83511319 -69025940 + CT-rich Low_complexity Low_complexity 3 92 0 1 1222 365 332 56 39 chr5 83511810 83512242 -69025017 + L1_Mur3 LINE L1 1508 1946 -3934 1 1222 28 61 0 0 chr5 83513167 83513216 -69024043 + AT_rich Low_complexity Low_complexity 1 49 0 1 1222 308 396 71 17 chr5 83513464 83513703 -69023556 - MLT1G LTR MaLR -332 259 8 1 1222 637 284 35 10 chr5 83513711 83513910 -69023349 + B3 SINE B2 1 204 -12 2 1222 32 43 0 0 chr5 83513943 83513989 -69023270 + AT_rich Low_complexity Low_complexity 1 46 0 2 1222 459 0 0 0 chr5 83514809 83514860 -69022399 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 2 1222 192 228 0 0 chr5 83515076 83515133 -69022126 + CT-rich Low_complexity Low_complexity 2 58 0 2 1222 257 310 0 94 chr5 83515141 83515237 -69022022 - PB1D7 SINE Alu -21 96 6 2 1222 1243 278 22 7 chr5 83515239 83515652 -69021607 - MTD LTR MaLR 0 419 1 2 1222 440 255 60 40 chr5 83515664 83515864 -69021395 - MTD-int LTR MaLR -12 1246 1043 2 1222 1514 276 74 19 chr5 83515864 83516328 -69020931 + Lx9 LINE L1 7049 7541 -103 2 1222 520 81 23 0 chr5 83516328 83516415 -69020844 + (TA)n Simple_repeat Simple_repeat 1 89 0 2 1222 1514 276 74 19 chr5 83516415 83516490 -69020769 + Lx9 LINE L1 7542 7617 -27 2 1222 1995 297 53 60 chr5 83516549 83517345 -69019914 - MTD-int LTR MaLR -165 1093 304 2 1222 2870 157 21 10 chr5 83517476 83517990 -69019269 + L1_Mur2 LINE L1 5193 5712 -165 2 1222 3004 85 13 30 chr5 83518036 83518499 -69018760 + L1_Mur1 LINE L1 4313 4767 -1119 2 1222 806 305 63 13 chr5 83518543 83518842 -69018417 - MTD LTR MaLR -59 360 47 3 1222 311 0 127 0 chr5 83518843 83518922 -69018337 + (TCCC)n Simple_repeat Simple_repeat 2 90 0 3 1222 1668 109 35 45 chr5 83518946 83518962 -69018297 - Lx3A LINE L1 0 6981 6971 3 1222 477 0 0 0 chr5 83518962 83519015 -69018244 + (TATG)n Simple_repeat Simple_repeat 2 54 0 3 1222 1668 109 35 45 chr5 83519015 83519286 -69017973 - Lx3A LINE L1 -11 6970 6697 3 1222 519 155 0 0 chr5 83519295 83519398 -69017861 + CT-rich Low_complexity Low_complexity 3 105 0 3 1222 1189 84 0 16 chr5 83519400 83519582 -69017677 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 1222 2452 108 13 11 chr5 83519626 83520002 -69017257 - L1_Mus4 LINE L1 -7 6629 6253 3 1222 1072 151 45 5 chr5 83520015 83520215 -69017044 + L1_Mm LINE L1 5234 5441 -442 3 1222 396 0 0 0 chr5 83520342 83520386 -69016873 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1222 316 351 102 57 chr5 83520506 83520820 -69016439 + MLT1A LTR MaLR 34 361 -13 3 1222 449 335 115 32 chr5 83521912 83522190 -69015069 + Lx8 LINE L1 6989 7289 -184 4 1222 1842 239 67 20 chr5 83522873 83523322 -69013937 - Lx6 LINE L1 0 7460 6991 4 1222 1078 128 11 16 chr5 83525048 83525231 -69012028 - B2_Mm2 SINE B2 -9 186 5 4 1222 836 220 98 38 chr5 83525445 83525813 -69011446 + Lx9 LINE L1 7250 7639 -5 4 1222 23 0 0 0 chr5 83526387 83526410 -69010849 + AT_rich Low_complexity Low_complexity 1 23 0 4 1222 312 229 0 0 chr5 83526769 83526878 -69010381 + GA-rich Low_complexity Low_complexity 2 110 0 4 1222 443 314 159 27 chr5 83526899 83527200 -69010059 - Lx9 LINE L1 -213 7431 7091 4 1222 253 186 0 28 chr5 83527274 83527346 -69009913 - L1MA7 LINE L1 -12 6279 6210 4 1222 1044 84 7 0 chr5 83527471 83527613 -69009646 + MTA_Mm LTR MaLR 254 396 0 4 1222 210 37 0 0 chr5 83527640 83527667 -69009592 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 4 1222 343 246 16 0 chr5 83528999 83529125 -69008134 + (TA)n Simple_repeat Simple_repeat 2 129 0 5 1222 337 361 28 0 chr5 83529146 83529290 -69007969 - MER70A LTR ERVL -1 471 324 5 1222 4525 45 0 0 chr5 83529424 83529974 -69007285 + L1_Mm LINE L1 5040 5589 -294 5 1222 247 222 0 0 chr5 83530127 83530172 -69007087 - B3A SINE B2 -148 50 6 5 1222 210 154 0 0 chr5 83530506 83530545 -69006714 + (TTAAA)n Simple_repeat Simple_repeat 2 40 0 5 1222 297 208 64 39 chr5 83530610 83530748 -69006511 + L1MD LINE L1 4231 4377 -1769 5 1222 216 250 194 0 chr5 83530783 83530855 -69006404 + PB1D10 SINE Alu 22 107 -10 5 1222 1130 75 7 0 chr5 83531378 83531524 -69005735 - B1_Mus2 SINE Alu 0 147 1 5 1222 265 292 113 11 chr5 83531551 83531711 -69005548 + L1M2 LINE L1 2357 2536 -3604 5 1222 442 350 49 15 chr5 83531824 83532088 -69005171 + B4 SINE B4 2 274 -18 5 1222 277 351 62 7 chr5 83532176 83532483 -69004776 + L1M2 LINE L1 2719 3042 -3101 5 1222 24 0 0 0 chr5 83533029 83533053 -69004206 + AT_rich Low_complexity Low_complexity 1 24 0 6 1222 189 0 0 0 chr5 83533117 83533138 -69004121 + (TC)n Simple_repeat Simple_repeat 1 21 0 6 1222 246 62 0 0 chr5 83533138 83533169 -69004090 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1222 30 0 0 0 chr5 83533299 83533329 -69003930 + AT_rich Low_complexity Low_complexity 1 30 0 6 1222 388 345 66 35 chr5 83533482 83533770 -69003489 + L1M2 LINE L1 3197 3493 -2653 6 1222 1786 90 11 11 chr5 83533815 83534086 -69003173 + L1_Mus3 LINE L1 6361 6631 -7 6 1222 22 35 0 0 chr5 83534175 83534204 -69003055 + AT_rich Low_complexity Low_complexity 1 29 0 6 1222 6500 197 19 5 chr5 83534324 83535803 -69001456 - Lx3C LINE L1 -5 6971 5471 6 1222 989 180 19 0 chr5 83535801 83536007 -69001252 + L1_Mur1 LINE L1 3285 3494 -2392 6 1222 3466 156 71 7 chr5 83536025 83536742 -69000517 - L1_Mur1 LINE L1 -3150 2736 1974 6 1222 2219 188 15 7 chr5 83536731 83537192 -69000067 - L1VL4 LINE L1 -5313 989 525 7 1222 37978 30 0 0 chr5 83537766 83544189 -68993070 - L1Md_T LINE L1 0 6585 66 7 1222 207 0 0 0 chr5 83544298 83544321 -68992938 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1222 485 282 92 94 chr5 83544338 83545162 -68992097 + L1M2 LINE L1 3731 4539 -1338 6 1222 533 151 325 8 chr5 83545173 83545266 -68991993 - MT2C_Mm LTR ERVL -364 220 95 7 1222 294 53 0 0 chr5 83545266 83545304 -68991955 + B2_Mm2 SINE B2 3 40 -155 7 1222 7133 105 7 33 chr5 83545339 83546152 -68991107 + L1VL2 LINE L1 9 819 -5516 7 1222 2641 43 9 0 chr5 83546152 83546476 -68990783 + L1Md_F3 LINE L1 6244 6570 -14 7 1222 12237 94 20 60 chr5 83546476 83548698 -68988561 + L1VL2 LINE L1 820 2930 -685 7 1222 2515 163 77 25 chr5 83549114 83549624 -68987635 - Lx4A LINE L1 0 7058 6523 7 1222 21357 88 2 4 chr5 83549698 83553408 -68983851 - L1Md_F2 LINE L1 0 6582 2882 7 1222 203 135 0 71 chr5 83553425 83553481 -68983778 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 7 1222 21 0 0 0 chr5 83553489 83553510 -68983749 + AT_rich Low_complexity Low_complexity 1 21 0 8 1222 520 318 79 4 chr5 83554025 83554263 -68982996 + MTC-int LTR MaLR 312 567 -691 8 1222 1530 193 40 82 chr5 83554263 83554641 -68982618 - ORR1B1 LTR MaLR -2 392 31 8 1222 764 292 118 128 chr5 83554626 83554788 -68982471 + MTC-int LTR MaLR 547 821 -437 8 1222 964 179 349 69 chr5 83554788 83554895 -68982364 + RLTR23 LTR ERV1 2 192 -238 8 1222 275 49 0 24 chr5 83554895 83554937 -68982322 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 8 1222 964 179 349 69 chr5 83554937 83555164 -68982095 + RLTR23 LTR ERV1 193 430 0 8 1222 764 292 118 128 chr5 83555164 83555550 -68981709 + MTC-int LTR MaLR 728 1090 -8 8 1222 415 304 87 29 chr5 83555560 83555867 -68981392 + MTD LTR MaLR 2 319 -81 8 1222 219 146 0 0 chr5 83556217 83556258 -68981001 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1222 231 386 0 34 chr5 83556637 83556755 -68980504 - B4 SINE B4 -178 114 1 8 1222 28 48 0 0 chr5 83557275 83557317 -68979942 + AT_rich Low_complexity Low_complexity 1 42 0 8 1222 2895 82 8 8 chr5 83557800 83558194 -68979065 - MTA_Mm LTR MaLR -2 394 1 8 1222 270 0 0 0 chr5 83558322 83558352 -68978907 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1222 487 370 4 9 chr5 83558796 83559025 -68978234 + MLT2C1 LTR ERVL 4 231 -166 9 1222 932 49 8 0 chr5 83559049 83559171 -68978088 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 9 1222 496 279 86 24 chr5 83559759 83559968 -68977291 - RLTR45 LTR ERVK 0 482 261 9 1222 672 36 0 0 chr5 83560237 83560320 -68976939 + (GGAA)n Simple_repeat Simple_repeat 3 85 0 9 1222 234 196 0 18 chr5 83560320 83560371 -68976888 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 9 1222 2525 239 89 16 chr5 83560387 83561024 -68976235 - Lx6 LINE L1 -11 7449 6766 9 1222 791 115 8 0 chr5 83561030 83561160 -68976099 + (TTTCC)n Simple_repeat Simple_repeat 1 131 0 9 1222 825 124 0 0 chr5 83561166 83561295 -68975964 + (TTTC)n Simple_repeat Simple_repeat 3 131 0 9 1222 268 303 0 0 chr5 83561297 83561375 -68975884 - Lx6 LINE L1 -950 6746 6666 9 1222 252 86 0 0 chr5 83561379 83561414 -68975845 + (CAA)n Simple_repeat Simple_repeat 2 36 0 9 1222 1872 196 23 21 chr5 83562233 83562610 -68974649 + ORR1B2 LTR MaLR 1 379 0 1 1222 22 70 0 0 chr5 83562610 83562653 -68974606 + AT_rich Low_complexity Low_complexity 1 43 0 1 1222 22 56 0 0 chr5 83562750 83562786 -68974473 + AT_rich Low_complexity Low_complexity 1 36 0 1 1222 265 395 78 0 chr5 83563145 83563274 -68973985 - B4 SINE B4 -126 166 28 1 1222 3247 107 8 0 chr5 83564402 83564877 -68972382 - L1Md_A LINE L1 -1020 4863 4385 1 1222 12256 93 17 1 chr5 83564879 83566551 -68970708 - L1Md_A LINE L1 -2214 3669 1969 1 1222 311 0 0 25 chr5 83566551 83566591 -68970668 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1222 12256 93 17 1 chr5 83566591 83566701 -68970558 - L1Md_A LINE L1 -3915 1968 1859 1 1222 2366 52 3 0 chr5 83566701 83566992 -68970267 + L1Md_F2 LINE L1 5926 6217 -365 1 1222 1031 94 12 181 chr5 83566998 83567246 -68970013 + IAPLTR1_Mm LTR ERVK 183 388 -2 1 1222 21558 43 33 21 chr5 83567246 83569981 -68967278 + IAPEz-int LTR ERVK 6 2774 -3707 1 1222 2449 18 0 0 chr5 83570004 83570286 -68966973 + IAPEz-int LTR ERVK 4076 4357 -2124 1 1222 5880 59 13 18 chr5 83570277 83571052 -68966207 + IAPEz-int LTR ERVK 5709 6479 -2 1 1222 2323 113 14 24 chr5 83571054 83571425 -68965834 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1222 2724 74 0 11 chr5 83571425 83571793 -68965466 + L1Md_F2 LINE L1 6219 6582 0 1 1222 4583 80 11 3 chr5 83571793 83572513 -68964746 - L1Md_A LINE L1 -4012 1871 1139 1 1222 573 94 0 19 chr5 83572517 83572625 -68964634 - L1Md_F2 LINE L1 0 6582 6477 1 1222 461 28 14 0 chr5 83573119 83573190 -68964069 - L1_Mus3 LINE L1 -2 6636 6565 1 1222 286 257 33 33 chr5 83574035 83574216 -68963043 - Lx7 LINE L1 -148 7548 7368 1 1222 423 0 0 0 chr5 83574267 83574314 -68962945 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1222 784 203 36 2 chr5 83574315 83574484 -68962775 - Lx7 LINE L1 -792 6904 6758 1 1222 209 167 40 53 chr5 83574493 83574569 -68962690 + T-rich Low_complexity Low_complexity 4 78 0 1 1222 414 0 0 0 chr5 83574571 83574617 -68962642 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 1 1222 443 222 168 9 chr5 83574628 83574861 -68962398 - Lx4B LINE L1 -43 7015 6746 1 1222 11933 182 42 17 chr5 83574853 83577411 -68959848 - L1_Mur2 LINE L1 -617 5260 2640 1 1222 5107 145 26 15 chr5 83577807 83578659 -68958600 + Lx2 LINE L1 6131 6991 -6 1 1222 403 112 20 30 chr5 83579239 83579340 -68957919 + (TA)n Simple_repeat Simple_repeat 2 101 0 1 1222 306 85 64 0 chr5 83579738 83579785 -68957474 - RLTR44C LTR ERVK -137 365 316 1 1222 13466 67 14 2 chr5 83579785 83581109 -68956150 - L1Md_F2 LINE L1 -4 6578 5244 1 1222 405 0 0 0 chr5 83581109 83581154 -68956105 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1222 13466 85 21 1 chr5 83581154 83582380 -68954879 - L1Md_F2 LINE L1 -640 5243 3981 1 1222 6453 98 6 0 chr5 83582380 83583268 -68953991 - RLTR13B1 LTR ERVK 0 893 1 1 1222 12308 104 31 17 chr5 83583273 83584982 -68952277 - RLTR45-int LTR ERVK -1173 6071 4762 1 1222 222 62 0 0 chr5 83584982 83585014 -68952245 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1 1222 12308 95 39 19 chr5 83585014 83585672 -68951587 - RLTR45-int LTR ERVK -2483 4761 4100 1 1222 10415 79 3 1 chr5 83585672 83587084 -68950175 + L1Md_F2 LINE L1 4172 5586 -297 1 1222 7263 71 27 0 chr5 83587084 83588054 -68949205 + L1Md_F2 LINE L1 5587 6582 0 1 1222 315 49 0 0 chr5 83588218 83588259 -68949000 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 1 1222 592 305 0 48 chr5 83588284 83588491 -68948768 - B3 SINE B2 -15 201 5 1 1222 202 204 0 0 chr5 83590009 83590053 -68947206 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1222 22 56 0 0 chr5 83590619 83590655 -68946604 + AT_rich Low_complexity Low_complexity 1 36 0 1 1222 201 121 0 0 chr5 83590772 83590805 -68946454 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1222 1762 114 128 0 chr5 83591069 83591359 -68945900 - ORR1A2 LTR MaLR 0 327 1 1 1222 5884 70 0 4 chr5 83591779 83592545 -68944714 - L1Md_F2 LINE L1 -11 6571 5809 1 1222 5589 64 10 0 chr5 83592546 83593287 -68943972 + Lx2 LINE L1 5120 5907 -1090 1 1222 594 0 0 0 chr5 83593287 83593353 -68943906 + (TAAAA)n Simple_repeat Simple_repeat 2 67 0 1 1222 1741 98 109 0 chr5 83593353 83593546 -68943713 + Lx2 LINE L1 5908 6138 -871 1 1222 871 204 41 18 chr5 83593547 83593767 -68943492 - Lx7 LINE L1 -1854 5842 5618 1 1222 1080 96 0 0 chr5 83593769 83593915 -68943344 + B1_Mus2 SINE Alu 1 146 -1 1 1222 1338 62 0 0 chr5 83593926 83594136 -68943123 + (TAGA)n Simple_repeat Simple_repeat 1 210 0 1 1222 1466 111 51 39 chr5 83594140 83594394 -68942865 + Lx3A LINE L1 6117 6373 -608 1 1222 2622 135 7 25 chr5 83594393 83594834 -68942425 + Lx3A LINE L1 6546 6978 -3 1 1222 482 341 58 36 chr5 83594923 83595148 -68942111 - MLT1E1A LTR MaLR -178 502 273 1 1222 513 92 0 0 chr5 83595148 83595224 -68942035 + (TTC)n Simple_repeat Simple_repeat 1 76 0 1 1222 510 17 0 0 chr5 83595226 83595285 -68941974 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 1 1222 1686 228 124 51 chr5 83595927 83596436 -68940823 + Lx2 LINE L1 6428 6973 -24 1 1222 1832 231 38 10 chr5 83597325 83597722 -68939537 - MTC LTR MaLR -11 410 3 1 1222 392 233 34 20 chr5 83597865 83598014 -68939245 - Lx9 LINE L1 -8 7636 7486 1 1222 28 71 0 0 chr5 83598058 83598114 -68939145 + AT_rich Low_complexity Low_complexity 1 56 0 1 1222 596 218 25 6 chr5 83598197 83598354 -68938905 - Lx9 LINE L1 -127 7517 7358 1 1222 808 263 60 5 chr5 83598361 83598579 -68938680 + Lx9 LINE L1 7048 7277 -367 1 1222 36 23 0 0 chr5 83598671 83598714 -68938545 + AT_rich Low_complexity Low_complexity 1 43 0 1 1222 21 0 0 0 chr5 83599903 83599924 -68937335 + AT_rich Low_complexity Low_complexity 1 21 0 1 1222 21 0 0 0 chr5 83600739 83600760 -68936499 + AT_rich Low_complexity Low_complexity 1 21 0 1 1222 475 310 42 14 chr5 83600760 83600904 -68936355 - B1_Mur1 SINE Alu 0 149 2 1 1222 450 314 25 0 chr5 83601075 83601193 -68936066 + RSINE1 SINE B4 9 129 -36 1 1222 3358 134 72 5 chr5 83601460 83602032 -68935227 - Lx2 LINE L1 0 6997 6388 1 1222 1329 231 25 50 chr5 83602194 83602432 -68934827 - ORR1D1 LTR MaLR -3 371 131 1 1222 3040 143 18 4 chr5 83602432 83602937 -68934322 + Lx2 LINE L1 6478 6989 -8 1 1222 1329 231 25 50 chr5 83602937 83603017 -68934242 - ORR1D1 LTR MaLR -244 130 61 1 1222 333 0 0 0 chr5 83603041 83603078 -68934181 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1222 230 314 70 0 chr5 83603082 83603168 -68934091 - ORR1D1-int LTR MaLR -1417 92 1 1 1222 736 265 56 95 chr5 83603168 83603417 -68933842 - ORR1D1 LTR MaLR 0 374 140 1 1222 332 22 22 0 chr5 83603417 83603462 -68933797 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1222 736 265 56 95 chr5 83603462 83603516 -68933743 - ORR1D1 LTR MaLR -235 139 83 1 1222 944 240 9 0 chr5 83603519 83603736 -68933523 + URR1B DNA MER1_type 5 223 -2 1 1222 360 0 0 0 chr5 83603737 83603777 -68933482 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1222 225 0 0 0 chr5 83603777 83603801 -68933458 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1222 438 20 0 0 chr5 83603801 83603851 -68933408 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1222 328 26 0 0 chr5 83604212 83604250 -68933009 + HAL1-3A_ME LINE L1 1975 2012 -846 1 1222 588 95 0 0 chr5 83604253 83604337 -68932922 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 1222 297 347 24 16 chr5 83604457 83604583 -68932676 + MLT1A0 LTR MaLR 145 271 -94 1 1222 242 270 13 0 chr5 83604676 83604740 -68932519 + B3A SINE B2 3 71 -145 1 1222 1638 65 18 0 chr5 83604888 83605105 -68932154 - L1_Mus1 LINE L1 0 6567 6347 1 1222 699 185 0 0 chr5 83605335 83605486 -68931773 + (TAGA)n Simple_repeat Simple_repeat 4 154 0 1 1222 216 143 0 0 chr5 83605832 83605874 -68931385 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1222 6581 85 7 2 chr5 83605970 83606859 -68930400 + RLTR13B1 LTR ERVK 1 893 0 1 1222 277 359 35 7 chr5 83606877 83607020 -68930239 + MER31A LTR ERV1 110 256 -229 1 1222 495 141 0 0 chr5 83607275 83607367 -68929892 + (TAG)n Simple_repeat Simple_repeat 1 92 0 1 1222 182 37 0 36 chr5 83608196 83608224 -68929035 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1222 854 290 0 5 chr5 83608422 83608616 -68928643 - B3 SINE B2 -23 193 1 1 1222 1097 121 46 0 chr5 83608779 83608953 -68928306 - B2_Mm1t SINE B2 -8 185 4 1 1222 22 0 0 0 chr5 83609762 83609784 -68927475 + AT_rich Low_complexity Low_complexity 1 22 0 1 1222 270 287 62 44 chr5 83609887 83610000 -68927259 - B3 SINE B2 -13 203 89 1 1222 464 210 0 6 chr5 83610105 83610273 -68926986 + (TA)n Simple_repeat Simple_repeat 1 167 0 1 1222 421 65 55 27 chr5 83610483 83610593 -68926666 + (TTTTG)n Simple_repeat Simple_repeat 1 113 0 1 1222 1076 75 0 26 chr5 83610593 83610744 -68926515 - B1_Mm SINE Alu 0 147 1 1 1222 27482 140 20 74 chr5 83610807 83616341 -68920918 + L1_Mus1 LINE L1 264 5517 -366 1 1222 7073 78 26 18 chr5 83616341 83617327 -68919932 + L1Md_F2 LINE L1 5587 6580 -2 1 1222 27482 83 11 16 chr5 83617327 83618592 -68918667 + L1_Mus1 LINE L1 5518 6566 -1 1 1222 2401 240 41 25 chr5 83618714 83619320 -68917939 + RLTR18 LTR ERVK 1 616 0 1 1222 626 311 117 39 chr5 83619718 83620092 -68917167 + MTC LTR MaLR 1 408 -13 1 1222 394 362 35 44 chr5 83620583 83620907 -68916352 + ORR1E LTR MaLR 1 338 -41 1 1222 255 178 0 0 chr5 83620917 83620962 -68916297 + RMER6C LTR ERVK 1 45 -675 1 1222 2284 198 56 38 chr5 83620956 83621477 -68915782 + RMER6C LTR ERVK 161 690 0 1 1222 369 0 0 0 chr5 83621560 83621601 -68915658 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1 1222 698 249 0 40 chr5 83622072 83622248 -68915011 + RLTR30 LTR ERV1 49 217 -162 1 1222 917 149 60 0 chr5 83622283 83622451 -68914808 + RLTR30 LTR ERV1 202 379 0 1 1222 378 200 0 153 chr5 83622772 83622896 -68914363 + MT2B LTR ERVL 155 259 -342 1 1222 630 167 64 57 chr5 83622792 83622932 -68914327 + B1_Mur3 SINE Alu 9 149 0 1 1222 378 126 9 19 chr5 83622932 83623037 -68914222 + A-rich Low_complexity Low_complexity 2 105 0 1 1222 566 348 82 44 chr5 83623038 83623381 -68913878 - MTE-int LTR MaLR -1216 364 9 1 1222 510 46 0 0 chr5 83623381 83623446 -68913813 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1222 292 293 13 0 chr5 83623500 83623575 -68913684 + GA-rich Low_complexity Low_complexity 1 76 0 1 1222 895 335 19 19 chr5 83623583 83623905 -68913354 - MTEb LTR MaLR -57 322 1 1 1223 25 31 0 0 chr5 83625610 83625642 -68911617 + AT_rich Low_complexity Low_complexity 1 32 0 1 1223 276 365 12 17 chr5 83627426 83627599 -68909660 + GA-rich Low_complexity Low_complexity 4 175 0 1 1223 191 36 0 35 chr5 83627626 83627655 -68909604 + (GGA)n Simple_repeat Simple_repeat 2 29 0 1 1223 21 36 0 0 chr5 83628000 83628028 -68909231 + AT_rich Low_complexity Low_complexity 1 28 0 1 1223 650 167 68 30 chr5 83628028 83628226 -68909033 - Lx4A LINE L1 -3 7055 6796 1 1223 381 322 28 22 chr5 83628523 83628701 -68908558 + Lx7 LINE L1 6885 7063 -633 1 1223 678 58 0 0 chr5 83629092 83629179 -68908080 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 1 1223 234 91 0 0 chr5 83630042 83630075 -68907184 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1223 311 105 18 0 chr5 83630107 83630164 -68907095 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 1 1223 288 0 0 0 chr5 83631054 83631086 -68906173 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1223 306 0 0 0 chr5 83631086 83631119 -68906140 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1223 23 0 0 0 chr5 83631942 83631965 -68905294 + AT_rich Low_complexity Low_complexity 1 23 0 2 1223 371 284 20 0 chr5 83632748 83632850 -68904409 - Lx9 LINE L1 -1717 5927 5824 2 1223 210 239 14 21 chr5 83633090 83633235 -68904024 + CT-rich Low_complexity Low_complexity 1 143 0 2 1223 675 46 0 0 chr5 83633456 83633543 -68903716 + (CA)n Simple_repeat Simple_repeat 2 88 0 2 1223 234 0 0 0 chr5 83633548 83633574 -68903685 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2 1223 1416 237 45 178 chr5 83633852 83634688 -68902571 - Lx7 LINE L1 0 7696 6972 2 1223 1619 85 5 0 chr5 83634706 83634930 -68902329 - L1_Mus2 LINE L1 0 6566 6342 2 1223 867 146 0 79 chr5 83634932 83635110 -68902149 + L1_Mm LINE L1 2337 2500 -3383 2 1223 442 239 34 8 chr5 83635127 83635245 -68902014 - Lx7 LINE L1 -741 6955 6835 2 1223 21 0 0 0 chr5 83635997 83636018 -68901241 + AT_rich Low_complexity Low_complexity 1 21 0 2 1223 33 0 0 0 chr5 83636641 83636674 -68900585 + AT_rich Low_complexity Low_complexity 1 33 0 2 1223 35 98 0 0 chr5 83637016 83637128 -68900131 + AT_rich Low_complexity Low_complexity 1 112 0 2 1223 65 14 0 0 chr5 83637185 83637257 -68900002 + AT_rich Low_complexity Low_complexity 1 72 0 2 1223 23 0 0 0 chr5 83637449 83637472 -68899787 + AT_rich Low_complexity Low_complexity 1 23 0 2 1223 223 188 22 45 chr5 83637537 83637626 -68899633 + (TTATA)n Simple_repeat Simple_repeat 3 89 0 2 1223 374 329 143 13 chr5 83637762 83637916 -68899343 - B3 SINE B2 -42 174 1 2 1223 643 281 43 61 chr5 83639138 83639454 -68897805 - Lx7 LINE L1 0 7696 7387 2 1223 1083 139 0 0 chr5 83639454 83639634 -68897625 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1223 643 281 43 61 chr5 83639634 83639662 -68897597 - Lx7 LINE L1 -310 7386 7359 2 1223 629 183 0 0 chr5 83639952 83640056 -68897203 - Lx5 LINE L1 -178 6872 6769 2 1223 37 23 0 0 chr5 83640390 83640434 -68896825 + AT_rich Low_complexity Low_complexity 1 44 0 2 1223 366 304 49 0 chr5 83641261 83641363 -68895896 + ORR1D1 LTR MaLR 102 208 -166 2 1223 297 276 141 59 chr5 83641452 83641587 -68895672 + ORR1D1 LTR MaLR 229 374 0 2 1223 245 253 29 95 chr5 83641663 83641768 -68895491 - Cheshire DNA MER1_type -771 1649 1552 2 1223 1046 77 14 0 chr5 83642785 83642928 -68894331 + B1_Mus1 SINE Alu 3 147 -1 2 1223 695 153 94 0 chr5 83643101 83643258 -68894001 - L1_Mur2 LINE L1 -1295 4585 4417 2 1223 5432 93 55 0 chr5 83643584 83644368 -68892891 - L1_Mus4 LINE L1 -10 6626 5800 2 1223 291 333 97 18 chr5 83644383 83644548 -68892711 - B3A SINE B2 -15 183 6 2 1223 23 0 0 0 chr5 83645669 83645692 -68891567 + AT_rich Low_complexity Low_complexity 1 23 0 2 1223 533 293 12 29 chr5 83647212 83647419 -68889840 - L1_Mur3 LINE L1 -605 5589 5350 2 1223 1817 225 50 2 chr5 83647510 83647933 -68889326 - Lx2B LINE L1 -333 6667 6225 2 1223 4960 174 53 62 chr5 83647924 83648457 -68888802 + L1_Mur1 LINE L1 2750 3318 -2568 2 1223 2001 104 3 7 chr5 83648457 83648758 -68888501 + L1Md_F2 LINE L1 6282 6581 -1 2 1223 4960 174 53 62 chr5 83648758 83649419 -68887840 + L1_Mur1 LINE L1 3319 3932 -1954 2 1223 594 292 82 0 chr5 83650504 83650699 -68886560 + MTD LTR MaLR 1 211 -208 2 1223 2196 109 14 37 chr5 83650699 83651052 -68886207 - Lx LINE L1 -176 5707 5363 2 1223 5786 137 11 11 chr5 83651045 83651981 -68885278 + Lx LINE L1 5719 6654 0 2 1223 553 266 8 0 chr5 83651984 83652108 -68885151 + MTD LTR MaLR 196 320 -99 2 1223 316 374 38 21 chr5 83652266 83652452 -68884807 - B3 SINE B2 -3 213 25 2 1223 264 266 43 0 chr5 83652657 83652746 -68884513 - L1_Mur3 LINE L1 -3193 2684 2586 2 1223 22 0 0 0 chr5 83652866 83652888 -68884371 + AT_rich Low_complexity Low_complexity 1 22 0 2 1223 347 280 37 18 chr5 83655344 83655453 -68881806 + ORR1B1 LTR MaLR 266 376 -18 2 1223 1736 186 114 100 chr5 83655455 83656208 -68881051 - RMER6D LTR ERVK 0 720 6 2 1223 462 91 0 0 chr5 83656308 83656385 -68880874 + (T)n Simple_repeat Simple_repeat 1 77 0 2 1223 325 374 16 39 chr5 83656542 83656670 -68880589 + B1_Mus2 SINE Alu 3 127 -20 2 1223 735 192 203 26 chr5 83656778 83656970 -68880289 + URR1A DNA MER1_type 1 226 0 2 1223 287 388 0 0 chr5 83656980 83657060 -68880199 - B1F2 SINE Alu -63 86 7 2 1223 4227 99 19 11 chr5 83657209 83657843 -68879416 + Lx3_Mus LINE L1 6368 7006 -3 2 1223 446 299 36 7 chr5 83658269 83658407 -68878852 + RMER30 DNA MER1_type 10 151 -51 2 1223 340 270 137 14 chr5 83658295 83658434 -68878825 - Charlie12 DNA MER1_type -2698 175 20 2 1223 22 0 0 0 chr5 83659369 83659391 -68877868 + AT_rich Low_complexity Low_complexity 1 22 0 2 1223 201 204 20 0 chr5 83659989 83660038 -68877221 + T-rich Low_complexity Low_complexity 4 53 0 2 1223 950 280 21 40 chr5 83661386 83661731 -68875528 + Lx2B LINE L1 6283 6913 -87 2 1223 201 245 0 0 chr5 83661943 83661992 -68875267 + (TCTCTG)n Simple_repeat Simple_repeat 2 50 0 2 1223 219 140 0 0 chr5 83662015 83662065 -68875194 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1223 258 179 30 0 chr5 83662066 83662133 -68875126 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 2 1223 213 65 0 0 chr5 83662155 83662186 -68875073 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 2 1223 316 92 30 15 chr5 83662297 83662363 -68874896 + (TTTTTG)n Simple_repeat Simple_repeat 2 68 0 2 1223 191 136 0 43 chr5 83662376 83662422 -68874837 + T-rich Low_complexity Low_complexity 3 46 0 2 1223 372 220 44 0 chr5 83662546 83662637 -68874622 + L1_Mur2 LINE L1 487 581 -6505 2 1223 1536 133 4 193 chr5 83662634 83662822 -68874437 + L1_Mur2 LINE L1 2818 3000 -2877 2 1223 5734 145 73 9 chr5 83662822 83663855 -68873404 + Lx3C LINE L1 5868 6966 -10 2 1223 1536 133 4 193 chr5 83663855 83664121 -68873138 + L1_Mur2 LINE L1 3001 3186 -2691 2 1223 773 189 44 6 chr5 83664122 83664303 -68872956 - L1_Mur3 LINE L1 -854 5026 4839 2 1223 465 19 0 0 chr5 83665660 83665714 -68871545 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1223 293 136 0 0 chr5 83667382 83667426 -68869833 - U2 snRNA snRNA -144 44 1 2 1223 403 264 60 24 chr5 83667429 83667596 -68869663 - Lx7 LINE L1 -18 7678 7506 2 1223 436 315 169 20 chr5 83667732 83668270 -68868989 - Lx8 LINE L1 -4 7469 6817 2 1223 180 0 0 0 chr5 83668531 83668551 -68868708 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1223 916 252 45 65 chr5 83669338 83669647 -68867612 + Lx6 LINE L1 7152 7454 -6 2 1223 1036 145 38 0 chr5 83669651 83669837 -68867422 + B2_Mm1t SINE B2 1 193 0 2 1223 228 67 0 0 chr5 83669837 83669867 -68867392 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1223 343 298 33 7 chr5 83669951 83670088 -68867171 - Lx8 LINE L1 -2021 5675 5498 2 1223 28 0 0 26 chr5 83670506 83670520 -68866739 + AT_rich Low_complexity Low_complexity 1 14 0 2 1223 1029 138 27 27 chr5 83670520 83670706 -68866553 - B2_Mm2 SINE B2 -8 187 2 2 1223 28 0 0 26 chr5 83670706 83670730 -68866529 + AT_rich Low_complexity Low_complexity 1 24 0 2 1223 8470 61 1 8 chr5 83670738 83672548 -68864711 - L1Md_F2 LINE L1 -10 6572 4778 2 1223 266 268 75 105 chr5 83673007 83673207 -68864052 - B2_Mm2 SINE B2 -1 194 1 2 1223 497 320 65 70 chr5 83675680 83675865 -68861394 - B3A SINE B2 -6 192 9 2 1223 185 159 23 0 chr5 83676053 83676097 -68861162 + A-rich Low_complexity Low_complexity 3 47 0 2 1223 346 298 61 69 chr5 83676103 83676348 -68860911 + L1MC3 LINE L1 7323 7565 -220 2 1223 1191 222 35 21 chr5 83676402 83676692 -68860567 + RLTR40 LTR ERVK 4 297 -520 2 1223 1627 279 57 96 chr5 83677075 83677917 -68859342 - RLTR40 LTR ERVK -8 809 1 2 1223 354 170 0 0 chr5 83679675 83679769 -68857490 + CT-rich Low_complexity Low_complexity 1 94 0 2 1223 31 0 0 0 chr5 83679995 83680026 -68857233 + AT_rich Low_complexity Low_complexity 1 31 0 2 1223 206 95 24 0 chr5 83680346 83680388 -68856871 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1223 259 374 84 0 chr5 83680969 83681076 -68856183 - PB1D10 SINE Alu 0 117 2 2 1223 421 358 48 12 chr5 83681076 83681158 -68856101 - ID SINE ID -136 88 1 2 1223 1714 84 0 0 chr5 83681311 83681548 -68855711 - L1_Mus4 LINE L1 -12 6624 6388 2 1223 24 0 0 0 chr5 83682119 83682143 -68855116 + AT_rich Low_complexity Low_complexity 1 24 0 2 1223 275 183 0 0 chr5 83682320 83682380 -68854879 - Lx2B LINE L1 0 7000 6941 2 1223 231 382 84 42 chr5 83682403 83682545 -68854714 + MLT1A1 LTR MaLR 81 228 -180 2 1223 442 248 8 8 chr5 83682639 83682765 -68854494 + Lx7 LINE L1 7571 7696 0 2 1223 559 336 91 55 chr5 83683687 83683961 -68853298 + B4A SINE B4 5 288 -4 2 1223 254 237 0 17 chr5 83684048 83684108 -68853151 + (CATG)n Simple_repeat Simple_repeat 2 60 0 2 1223 405 0 0 0 chr5 83684109 83684154 -68853105 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1223 650 295 133 7 chr5 83684154 83684703 -68852556 - Lx7 LINE L1 -1091 6605 5922 2 1223 22 35 0 0 chr5 83684743 83684772 -68852487 + AT_rich Low_complexity Low_complexity 1 29 0 2 1223 327 25 0 0 chr5 83684923 83684963 -68852296 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1223 1903 189 20 15 chr5 83685601 83685993 -68851266 - ORR1B1 LTR MaLR 0 394 1 2 1223 210 71 0 0 chr5 83686440 83686468 -68850791 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1223 1831 120 18 48 chr5 83686507 83686839 -68850420 - Lx3_Mus LINE L1 -6 7003 6682 2 1223 43 92 0 0 chr5 83686933 83687053 -68850206 + AT_rich Low_complexity Low_complexity 1 120 0 2 1223 482 313 56 38 chr5 83687305 83687617 -68849642 - Lx7 LINE L1 -856 5287 4940 2 1223 302 232 168 0 chr5 83687996 83688115 -68849144 - L1MA9 LINE L1 -420 5892 5755 2 1223 238 226 0 0 chr5 83688352 83688405 -68848854 - MER97c DNA MER1_type? -379 711 659 2 1223 1738 237 131 15 chr5 83688630 83689178 -68848081 - Lx7 LINE L1 -346 7350 6739 2 1223 441 0 0 0 chr5 83689437 83689486 -68847773 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1223 540 82 70 20 chr5 83689496 83689596 -68847663 + L1_Mur2 LINE L1 666 770 -5942 2 1223 189 0 0 0 chr5 83690017 83690038 -68847221 + (GGGTG)n Simple_repeat Simple_repeat 2 22 0 3 1223 625 255 104 0 chr5 83690079 83690310 -68846949 - Lx9 LINE L1 -15 7629 7375 3 1223 279 311 98 26 chr5 83690365 83690629 -68846630 - L1MA9 LINE L1 -755 5388 5106 2 1223 21 36 0 0 chr5 83690715 83690743 -68846516 + AT_rich Low_complexity Low_complexity 1 28 0 3 1223 758 227 155 0 chr5 83690963 83691170 -68846089 + ORR1C2 LTR MaLR 2 240 -144 3 1223 1250 191 53 45 chr5 83691171 83691527 -68845732 - RMER6C LTR ERVK 0 690 332 3 1223 837 228 46 10 chr5 83691523 83691718 -68845541 - RMER6C LTR ERVK -481 209 8 3 1223 568 211 17 9 chr5 83691727 83691842 -68845417 + ORR1C2 LTR MaLR 269 384 0 3 1223 1086 95 0 0 chr5 83693399 83693546 -68843713 + B1_Mus1 SINE Alu 2 148 0 3 1223 216 0 0 0 chr5 83694323 83694347 -68842912 + (TC)n Simple_repeat Simple_repeat 2 25 0 3 1223 203 103 0 25 chr5 83694347 83694386 -68842873 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 1223 312 27 0 0 chr5 83694521 83694558 -68842701 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 1223 621 299 111 40 chr5 83694558 83695010 -68842249 - Lx7 LINE L1 -32 7664 7181 3 1223 464 365 49 13 chr5 83695901 83696126 -68841133 - ORR1E LTR MaLR -112 247 15 3 1223 480 266 18 43 chr5 83696744 83696882 -68840377 - RLTR19 LTR ERVK 0 499 386 3 1223 36500 31 5 7 chr5 83697078 83702284 -68834975 + L1Md_A LINE L1 406 5586 -297 3 1223 8308 34 1 0 chr5 83702284 83703279 -68833980 + L1Md_T LINE L1 5587 6582 0 3 1223 36500 25 5 0 chr5 83703279 83703307 -68833952 + L1Md_A LINE L1 5587 5620 -263 3 1223 315 0 0 0 chr5 83703386 83703421 -68833838 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1223 22 35 0 0 chr5 83703522 83703551 -68833708 + AT_rich Low_complexity Low_complexity 1 29 0 3 1223 307 175 19 10 chr5 83703907 83704011 -68833248 + Lx5 LINE L1 6945 7049 -1 3 1223 261 0 0 0 chr5 83705182 83705211 -68832048 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1223 264 308 54 11 chr5 83705538 83705630 -68831629 + B1_Mur2 SINE Alu 53 148 -1 3 1223 23 0 0 0 chr5 83706160 83706183 -68831076 + AT_rich Low_complexity Low_complexity 1 23 0 3 1223 995 247 56 59 chr5 83706246 83706586 -68830673 + RLTR40 LTR ERVK 468 806 -11 3 1223 517 257 133 6 chr5 83707895 83708075 -68829184 + Lx7 LINE L1 6943 7145 -551 3 1223 23 54 0 0 chr5 83709379 83709416 -68827843 + AT_rich Low_complexity Low_complexity 1 37 0 3 1223 5241 163 93 9 chr5 83710751 83711778 -68825481 + RLTR13D3 LTR ERVK 1 1114 0 3 1223 207 100 0 0 chr5 83711838 83711868 -68825391 + (GA)n Simple_repeat Simple_repeat 2 31 0 3 1223 263 327 20 0 chr5 83711986 83712087 -68825172 - B4A SINE B4 -2 290 188 3 1223 415 343 53 29 chr5 83712420 83712666 -68824593 + RMER15 LTR ERVL 306 557 -18 3 1223 32 26 0 0 chr5 83713060 83713099 -68824160 + AT_rich Low_complexity Low_complexity 1 39 0 3 1223 340 347 11 69 chr5 83713637 83713826 -68823433 + MTE-int LTR MaLR 373 550 -1030 3 1223 803 170 0 11 chr5 83714282 83714460 -68822799 + GA-rich Low_complexity Low_complexity 3 178 0 3 1223 22 80 0 0 chr5 83714801 83714851 -68822408 + AT_rich Low_complexity Low_complexity 1 50 0 3 1223 197 65 0 31 chr5 83716724 83716756 -68820503 + (TTA)n Simple_repeat Simple_repeat 3 33 0 3 1223 31 44 0 0 chr5 83716801 83716846 -68820413 + AT_rich Low_complexity Low_complexity 1 45 0 3 1223 1091 72 0 0 chr5 83717824 83717962 -68819297 - B1_Mus1 SINE Alu -9 139 2 3 1223 804 117 238 40 chr5 83718271 83718422 -68818837 - B2_Mm2 SINE B2 -14 181 1 3 1223 209 200 131 16 chr5 83718494 83718555 -68818704 + L3 LINE CR1 846 913 -3576 3 1223 442 221 361 0 chr5 83718726 83718884 -68818375 - B3 SINE B2 0 216 2 3 1223 405 0 0 0 chr5 83719359 83719404 -68817855 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1223 21 0 0 0 chr5 83719610 83719631 -68817628 + AT_rich Low_complexity Low_complexity 1 21 0 3 1223 186 148 36 18 chr5 83719692 83719747 -68817512 + (CATA)n Simple_repeat Simple_repeat 3 58 0 3 1223 421 304 29 0 chr5 83719812 83719983 -68817276 - Lx9 LINE L1 -130 7514 7339 3 1223 1075 69 21 0 chr5 83720378 83720523 -68816736 + B1_Mus1 SINE Alu 1 148 0 3 1223 1035 89 0 32 chr5 83720780 83720965 -68816294 + (TC)n Simple_repeat Simple_repeat 2 180 0 3 1223 1021 109 0 0 chr5 83721006 83721143 -68816116 - B1_Mus1 SINE Alu -8 140 4 3 1223 426 303 43 43 chr5 83721301 83721379 -68815880 + Lx8 LINE L1 6673 6750 -723 3 1223 219 36 0 0 chr5 83721379 83721407 -68815852 + (TATG)n Simple_repeat Simple_repeat 1 28 0 3 1223 477 0 0 0 chr5 83721408 83721461 -68815798 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 3 1223 3134 64 2 0 chr5 83721461 83721867 -68815392 - L1_Mus2 LINE L1 -6 6560 6154 3 1223 426 303 43 43 chr5 83721867 83721971 -68815288 + Lx8 LINE L1 6751 6857 -616 3 1223 23 68 0 0 chr5 83722446 83722490 -68814769 + AT_rich Low_complexity Low_complexity 1 44 0 3 1223 405 0 0 0 chr5 83722677 83722722 -68814537 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1223 21 36 0 0 chr5 83722758 83722786 -68814473 + AT_rich Low_complexity Low_complexity 1 28 0 3 1223 475 267 129 12 chr5 83723192 83723355 -68813904 + MTD LTR MaLR 20 201 -218 3 1223 212 200 0 18 chr5 83723449 83723505 -68813754 + CT-rich Low_complexity Low_complexity 2 56 0 3 1223 252 0 0 0 chr5 83723930 83723958 -68813301 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1223 35 83 0 0 chr5 83724050 83724134 -68813125 + AT_rich Low_complexity Low_complexity 1 84 0 3 1223 482 231 90 30 chr5 83724648 83724782 -68812477 - L1_Mur2 LINE L1 -722 5155 5014 3 1223 1000 112 88 0 chr5 83724810 83724980 -68812279 - L1Md_F2 LINE L1 -4 6578 6394 3 1223 2010 144 13 3 chr5 83724994 83725372 -68811887 - L1_Mur2 LINE L1 -1632 4511 4096 3 1223 5903 191 65 17 chr5 83725368 83727042 -68810217 + Lx3C LINE L1 5221 6974 -2 3 1223 612 361 55 43 chr5 83727257 83727656 -68809603 - Lx9 LINE L1 -803 6841 6438 3 1223 420 197 65 2 chr5 83729439 83729553 -68807706 - B1_Mur4 SINE Alu 0 150 3 3 1223 28 0 0 0 chr5 83730013 83730041 -68807218 + AT_rich Low_complexity Low_complexity 1 28 0 3 1223 420 71 0 0 chr5 83730421 83730477 -68806782 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1223 360 358 28 33 chr5 83730783 83730965 -68806294 + MTD LTR MaLR 10 190 -229 3 1223 243 238 95 0 chr5 83730932 83730995 -68806264 + PB1D10 SINE Alu 32 100 -17 3 1223 246 136 0 0 chr5 83731415 83731459 -68805800 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1223 22 0 0 0 chr5 83731555 83731577 -68805682 + AT_rich Low_complexity Low_complexity 1 22 0 3 1223 275 125 0 51 chr5 83732305 83732364 -68804895 + T-rich Low_complexity Low_complexity 1 56 0 3 1223 428 358 60 8 chr5 83732449 83732683 -68804576 - MER2 DNA MER2_type -7 338 93 3 1223 24 32 0 0 chr5 83732864 83732895 -68804364 + AT_rich Low_complexity Low_complexity 1 31 0 3 1223 550 183 8 17 chr5 83733878 83733995 -68803264 - Lx3C LINE L1 -664 5222 5107 3 1223 4690 173 16 9 chr5 83733994 83735259 -68802000 + Lx3C LINE L1 5222 6500 -476 3 1223 477 0 0 0 chr5 83736567 83736620 -68800639 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 1223 24 0 0 0 chr5 83736852 83736876 -68800383 + AT_rich Low_complexity Low_complexity 1 24 0 3 1223 270 234 156 0 chr5 83737050 83737127 -68800132 - B3 SINE B2 -127 89 1 3 1223 207 186 0 0 chr5 83738885 83738928 -68798331 + (CATA)n Simple_repeat Simple_repeat 2 44 0 3 1223 1258 92 33 0 chr5 83738932 83739116 -68798143 - B2_Mm1a SINE B2 -2 191 2 3 1223 180 0 0 0 chr5 83739128 83739148 -68798111 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 1223 1002 76 0 0 chr5 83739148 83739279 -68797980 - B1_Mus1 SINE Alu -13 135 5 3 1223 954 107 0 0 chr5 83739414 83739582 -68797677 + (TC)n Simple_repeat Simple_repeat 1 168 0 3 1223 488 289 37 7 chr5 83740925 83741061 -68796198 + B3 SINE B2 1 140 -76 3 1223 207 0 0 0 chr5 83741081 83741104 -68796155 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1223 369 0 0 0 chr5 83741485 83741526 -68795733 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1223 243 340 30 0 chr5 83742634 83742734 -68794525 + PB1D10 SINE Alu 14 116 -1 3 1223 404 172 11 0 chr5 83743369 83743456 -68793803 + (TA)n Simple_repeat Simple_repeat 1 88 0 3 1223 478 231 0 14 chr5 83745007 83745152 -68792107 + (TA)n Simple_repeat Simple_repeat 2 144 0 3 1223 523 204 0 27 chr5 83745662 83745773 -68791486 + B1_Mus2 SINE Alu 40 147 0 3 1223 454 253 191 53 chr5 83745793 83745981 -68791278 + B3 SINE B2 2 215 -1 3 1223 198 0 0 0 chr5 83746020 83746042 -68791217 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1223 1241 143 0 5 chr5 83746209 83746420 -68790839 + L1_Mus4 LINE L1 6411 6620 -16 3 1223 30694 89 9 7 chr5 83746426 83751196 -68786063 + L1Md_F2 LINE L1 467 5234 -649 3 1223 225 0 0 0 chr5 83751196 83751221 -68786038 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 1223 30694 72 8 2 chr5 83751221 83751419 -68785840 + L1Md_F2 LINE L1 5235 5440 -443 3 1223 7479 75 5 0 chr5 83751419 83752408 -68784851 + L1Md_F2 LINE L1 5588 6581 -1 3 1223 515 257 15 46 chr5 83752408 83752428 -68784831 + L1M5 LINE L1 5471 5485 -679 3 1223 45 45 0 0 chr5 83752490 83752556 -68784703 + AT_rich Low_complexity Low_complexity 1 66 0 3 1223 1204 296 33 5 chr5 83754295 83754622 -68782637 + MTD LTR MaLR 13 346 -73 3 1223 180 0 0 0 chr5 83754622 83754642 -68782617 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1223 1204 296 33 5 chr5 83754642 83754681 -68782578 + MTD LTR MaLR 347 389 -30 3 1223 406 283 0 48 chr5 83754768 83754872 -68782387 - B1_Mur2 SINE Alu -49 100 2 3 1224 21 0 0 0 chr5 83755408 83755429 -68781830 + AT_rich Low_complexity Low_complexity 1 21 0 3 1224 379 301 14 68 chr5 83755907 83756053 -68781206 + ID_B1 SINE B4 69 206 -18 3 1224 344 341 90 13 chr5 83756540 83756721 -68780538 + MLT2B2 LTR ERVL 94 290 -230 3 1224 405 0 0 0 chr5 83758331 83758376 -68778883 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1224 414 342 61 42 chr5 83758390 83758848 -68778411 + L1M2 LINE L1 4767 5233 -910 3 1224 440 263 21 9 chr5 83758995 83759127 -68778132 + B1_Mur4 SINE Alu 6 141 -9 4 1224 485 309 56 72 chr5 83759147 83759264 -68777995 + L1M2 LINE L1 5395 5493 -807 3 1224 949 147 22 6 chr5 83759264 83759442 -68777817 + L1_Mus3 LINE L1 6451 6631 -7 4 1224 485 309 56 72 chr5 83759442 83759756 -68777503 + L1M2 LINE L1 5494 5819 -481 3 1224 1130 296 13 7 chr5 83759819 83760128 -68777131 - ORR1D2 LTR MaLR -4 366 56 4 1224 615 192 13 50 chr5 83760274 83760295 -68776964 + ID_B1 SINE B4 72 223 0 4 1224 1057 51 7 0 chr5 83760295 83760432 -68776827 + B1_Mus1 SINE Alu 11 148 0 4 1224 22 56 0 0 chr5 83761025 83761061 -68776198 + AT_rich Low_complexity Low_complexity 1 36 0 4 1224 23 33 0 0 chr5 83761771 83761801 -68775458 + AT_rich Low_complexity Low_complexity 1 30 0 4 1224 374 406 0 12 chr5 83761982 83762144 -68775115 + RSINE1 SINE B4 2 161 -4 4 1224 230 299 86 58 chr5 83762727 83762901 -68774358 + L1MA4 LINE L1 5399 5577 -726 4 1224 330 67 0 0 chr5 83762906 83762951 -68774308 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 4 1224 1704 179 55 12 chr5 83762991 83763239 -68774020 + ORR1B2 LTR MaLR 1 248 -119 4 1224 504 45 0 0 chr5 83763239 83763306 -68773953 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 1224 1704 179 55 12 chr5 83763306 83763401 -68773858 + ORR1B2 LTR MaLR 249 357 -10 4 1224 427 290 84 34 chr5 83763427 83763666 -68773593 + L1MA4 LINE L1 5677 5927 -373 4 1224 390 57 0 0 chr5 83763709 83763762 -68773497 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 4 1224 551 146 21 10 chr5 83763762 83763859 -68773400 + ORR1B1 LTR MaLR 289 386 -8 4 1224 366 293 78 58 chr5 83763873 83764132 -68773127 + L1MA4 LINE L1 5665 5928 -372 4 1224 537 16 0 0 chr5 83764173 83764235 -68773024 + (GA)n Simple_repeat Simple_repeat 1 62 0 4 1224 1159 229 39 13 chr5 83764564 83764885 -68772374 + ORR1B1 LTR MaLR 1 252 -142 4 1224 716 152 90 54 chr5 83764902 83765069 -68772190 - Lx3C LINE L1 -2 6974 6802 4 1224 334 20 60 0 chr5 83765948 83765998 -68771261 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 4 1224 1005 61 0 0 chr5 83765998 83766130 -68771129 - B1_Mus1 SINE Alu -11 137 6 4 1224 26 88 0 0 chr5 83766924 83766992 -68770267 + AT_rich Low_complexity Low_complexity 1 68 0 4 1224 41 78 0 0 chr5 83767415 83767505 -68769754 + AT_rich Low_complexity Low_complexity 1 90 0 4 1224 26 0 0 0 chr5 83768187 83768213 -68769046 + AT_rich Low_complexity Low_complexity 1 26 0 4 1224 297 0 0 0 chr5 83768263 83768296 -68768963 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1224 306 297 58 67 chr5 83768582 83768985 -68768274 + L1_Mur3 LINE L1 984 1399 -4481 4 1224 873 95 88 0 chr5 83769220 83769367 -68767892 - L1_Mus4 LINE L1 -2 6634 6475 4 1224 7151 126 8 11 chr5 83769402 83770562 -68766697 + Lx2A1 LINE L1 5838 6993 -15 4 1224 411 73 0 0 chr5 83770562 83770617 -68766642 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 4 1224 4624 52 3 0 chr5 83771303 83771884 -68765375 - L1Md_F2 LINE L1 0 6582 6000 4 1224 250 314 65 56 chr5 83772163 83772271 -68764988 + B4 SINE B4 32 140 -152 4 1224 25 31 0 0 chr5 83772384 83772416 -68764843 + AT_rich Low_complexity Low_complexity 1 32 0 4 1224 21 0 0 0 chr5 83772504 83772525 -68764734 + AT_rich Low_complexity Low_complexity 1 21 0 4 1224 23 33 0 0 chr5 83772734 83772764 -68764495 + AT_rich Low_complexity Low_complexity 1 30 0 4 1224 676 65 194 9 chr5 83773472 83773580 -68763679 + B1_Mus1 SINE Alu 21 148 0 4 1224 821 162 7 0 chr5 83773581 83773735 -68763524 + GA-rich Low_complexity Low_complexity 2 156 0 4 1224 425 19 19 0 chr5 83773838 83773892 -68763367 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1224 597 320 78 42 chr5 83774221 83774505 -68762754 - MER2 DNA MER2_type -31 314 21 4 1224 888 274 152 87 chr5 83774690 83775188 -68762071 + MTC-int LTR MaLR 22 553 -705 4 1224 387 359 32 55 chr5 83775188 83775406 -68761853 + B3 SINE B2 4 216 0 4 1224 3208 46 5 0 chr5 83775758 83776151 -68761108 + MTA_Mm LTR MaLR 2 396 0 4 1224 8550 48 3 40 chr5 83776151 83777290 -68759969 + MTA_Mm-int LTR MaLR 1 1098 0 4 1224 3258 41 8 0 chr5 83777290 83777683 -68759576 + MTA_Mm LTR MaLR 1 396 0 4 1224 23 54 0 0 chr5 83777939 83777976 -68759283 + AT_rich Low_complexity Low_complexity 1 37 0 4 1224 292 244 22 0 chr5 83778316 83778406 -68758853 + L1MA5 LINE L1 6192 6283 -17 4 1224 910 250 4 13 chr5 83778460 83778691 -68758568 + Lx6 LINE L1 7224 7452 -8 4 1224 21 0 0 0 chr5 83779817 83779838 -68757421 + AT_rich Low_complexity Low_complexity 1 21 0 4 1224 2687 131 0 2 chr5 83779856 83780262 -68756997 + Lx3A LINE L1 6570 6974 -7 4 1224 189 0 0 0 chr5 83780290 83780311 -68756948 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1224 327 286 98 12 chr5 83780841 83781004 -68756255 - L2 LINE L2 -740 2679 2503 4 1224 28 29 0 0 chr5 83781059 83781094 -68756165 + AT_rich Low_complexity Low_complexity 1 35 0 4 1224 237 65 0 0 chr5 83781905 83781936 -68755323 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1224 1158 112 0 0 chr5 83782090 83782268 -68754991 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 4 1224 488 186 17 6 chr5 83784681 83784859 -68752400 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1224 899 91 14 0 chr5 83784924 83785067 -68752192 + (TAGA)n Simple_repeat Simple_repeat 4 148 0 4 1224 427 294 16 0 chr5 83785224 83785350 -68751909 + RSINE1 SINE B4 5 132 -33 4 1224 1260 35 17 0 chr5 83785363 83785537 -68751722 + (CA)n Simple_repeat Simple_repeat 2 178 0 4 1224 1126 76 0 0 chr5 83785573 83785718 -68751541 - B1_Mus2 SINE Alu -1 146 2 4 1224 396 350 34 24 chr5 83786313 83786518 -68750741 - B3 SINE B2 -6 210 4 4 1224 1318 229 0 0 chr5 83786763 83787012 -68750247 - Lx5 LINE L1 -105 6945 6697 4 1224 356 0 0 22 chr5 83787339 83787384 -68749875 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1224 230 257 52 95 chr5 83787776 83787892 -68749367 - L1MC LINE L1 -2242 5543 5433 4 1224 3473 163 40 2 chr5 83788412 83789044 -68748215 - Lx2B LINE L1 -130 5747 5092 4 1224 2087 191 14 12 chr5 83789029 83789480 -68747779 + Lx2B LINE L1 5752 6199 -859 4 1224 209 321 0 24 chr5 83789552 83789635 -68747624 + CT-rich Low_complexity Low_complexity 6 86 0 4 1224 248 324 44 53 chr5 83790065 83790179 -68747080 + PB1D7 SINE Alu 1 113 -7 4 1224 32 26 0 0 chr5 83790217 83790256 -68747003 + AT_rich Low_complexity Low_complexity 1 39 0 4 1224 2442 50 0 85 chr5 83790390 83790743 -68746516 - L1Md_F3 LINE L1 -16 6568 6246 4 1224 339 25 0 0 chr5 83790756 83790796 -68746463 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 4 1224 603 0 0 0 chr5 83791889 83791956 -68745303 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1224 6768 57 5 9 chr5 83792137 83793008 -68744251 - L1Md_F2 LINE L1 -4 6578 5712 4 1224 8966 50 0 0 chr5 83793004 83794192 -68743067 + L1Md_Gf LINE L1 1099 2383 -3503 4 1224 1087 108 0 0 chr5 83794193 83794341 -68742918 - B1_Mus1 SINE Alu 0 148 1 4 1224 2359 49 13 22 chr5 83794932 83795246 -68742013 - L1Md_F3 LINE L1 -12 6572 6262 4 1224 1366 75 5 0 chr5 83795257 83795444 -68741815 + L1_Mus2 LINE L1 6378 6565 -1 4 1224 23 33 0 0 chr5 83797848 83797878 -68739381 + AT_rich Low_complexity Low_complexity 1 30 0 4 1224 22 0 0 0 chr5 83798457 83798479 -68738780 + AT_rich Low_complexity Low_complexity 1 22 0 4 1224 1130 280 49 24 chr5 83798656 83798985 -68738274 + RMER15 LTR ERVL 1 337 -238 4 1224 1747 281 48 109 chr5 83799069 83799873 -68737386 - MTB-int LTR MaLR -360 1010 1 4 1224 2758 72 72 3 chr5 83799873 83800247 -68737012 - MTB LTR MaLR 0 400 1 4 1224 956 182 21 56 chr5 83800247 83800478 -68736781 + URR1B DNA MER1_type 1 225 0 4 1224 735 71 0 0 chr5 83800567 83800665 -68736594 + (GGA)n Simple_repeat Simple_repeat 3 100 0 4 1224 346 69 17 17 chr5 83801710 83801769 -68735490 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1224 873 194 17 23 chr5 83802623 83802797 -68734462 - RLTR24 LTR ERV1 -356 173 1 4 1224 32 95 0 0 chr5 83802824 83802919 -68734340 + AT_rich Low_complexity Low_complexity 1 95 0 4 1224 446 44 73 0 chr5 83803068 83803136 -68734123 - L1Md_F3 LINE L1 0 6584 6512 4 1224 236 338 39 52 chr5 83803211 83803364 -68733895 - MER2 DNA MER2_type -122 223 73 4 1224 2797 195 27 47 chr5 83804131 83804878 -68732381 + L1_Mur3 LINE L1 2191 2922 -2958 4 1224 263 191 0 87 chr5 83804881 83804950 -68732309 - L1_Mur3 LINE L1 -3029 2851 2789 4 1224 1590 293 63 25 chr5 83804953 83805527 -68731732 + Lx5 LINE L1 6455 7043 -7 4 1224 25 0 0 0 chr5 83805566 83805591 -68731668 + AT_rich Low_complexity Low_complexity 1 25 0 4 1224 1831 207 28 20 chr5 83805771 83806171 -68731088 + MTB_Mm LTR MaLR 5 407 0 4 1224 4426 219 26 4 chr5 83806171 83807089 -68730170 + MTB_Mm-int LTR MaLR 3 940 -318 4 1224 275 361 84 0 chr5 83807278 83807397 -68729862 + B1F SINE Alu 20 148 -1 4 1224 369 0 0 0 chr5 83808357 83808398 -68728861 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1224 402 21 0 0 chr5 83808398 83808444 -68728815 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1224 2967 49 0 0 chr5 83808636 83809003 -68728256 + L1Md_F3 LINE L1 6204 6570 -14 4 1224 28 61 0 0 chr5 83809033 83809082 -68728177 + AT_rich Low_complexity Low_complexity 1 49 0 4 1224 238 284 81 0 chr5 83809651 83809725 -68727534 + RSINE1 SINE B4 50 129 -36 4 1224 680 299 19 5 chr5 83809808 83810016 -68727243 - B3 SINE B2 -1 215 5 4 1224 315 0 0 0 chr5 83811673 83811708 -68725551 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1224 189 0 0 0 chr5 83812005 83812026 -68725233 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1224 689 266 113 80 chr5 83812065 83812367 -68724892 - Lx7 LINE L1 -358 7338 7027 4 1224 23 68 0 0 chr5 83812602 83812646 -68724613 + AT_rich Low_complexity Low_complexity 1 44 0 4 1224 22547 40 1 0 chr5 83814343 83818751 -68718508 - L1Md_Gf LINE L1 -1790 4096 1 4 1224 1978 9 0 0 chr5 83818751 83818979 -68718280 + L1Md_T LINE L1 6355 6582 0 4 1224 513 0 0 0 chr5 83818987 83819044 -68718215 + (A)n Simple_repeat Simple_repeat 1 57 0 5 1224 21 36 0 0 chr5 83819323 83819351 -68717908 + AT_rich Low_complexity Low_complexity 1 28 0 5 1224 22 56 0 0 chr5 83819598 83819634 -68717625 + AT_rich Low_complexity Low_complexity 1 36 0 5 1224 459 170 0 0 chr5 83820216 83820316 -68716943 + (TA)n Simple_repeat Simple_repeat 1 100 0 5 1224 887 307 50 45 chr5 83820316 83820718 -68716541 - MLT2D LTR ERVL -10 404 1 5 1224 186 43 0 0 chr5 83820952 83820975 -68716284 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5 1224 830 339 69 21 chr5 83821011 83821448 -68715811 - Lx8 LINE L1 -319 7154 6697 5 1224 2280 72 119 11 chr5 83821651 83822003 -68715256 - RLTR10 LTR ERVK 0 390 1 5 1224 14671 28 1 0 chr5 83822005 83823687 -68713572 - RLTR10-int LTR ERVK -3 1984 302 5 1224 2179 87 129 11 chr5 83823687 83824036 -68713223 - RLTR10 LTR ERVK 0 390 1 5 1224 449 124 0 40 chr5 83824071 83824172 -68713087 - L1_Mus3 LINE L1 -3 6635 6539 5 1224 377 291 281 28 chr5 83824432 83824650 -68712609 + Lx8 LINE L1 6755 7039 -434 5 1224 195 114 0 0 chr5 83824707 83824742 -68712517 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1224 3742 70 6 6 chr5 83824869 83825368 -68711891 + L1Md_F2 LINE L1 6084 6582 0 5 1224 1528 220 42 81 chr5 83825818 83826137 -68711122 - RMER6A LTR ERVK 0 756 458 5 1224 1086 88 0 7 chr5 83826137 83826286 -68710973 - B1_Mus1 SINE Alu 0 148 1 5 1224 1528 220 42 81 chr5 83826286 83826460 -68710799 - RMER6A LTR ERVK -299 457 282 5 1224 1176 210 58 0 chr5 83826492 83826821 -68710438 - RMER6A LTR ERVK -317 439 92 5 1224 387 0 0 0 chr5 83826910 83826953 -68710306 + (T)n Simple_repeat Simple_repeat 1 43 0 5 1224 4625 75 5 24 chr5 83826982 83827637 -68709622 - L1Md_F2 LINE L1 -11 6571 5930 5 1224 7545 83 0 0 chr5 83828011 83829266 -68707993 + L1_Mus1 LINE L1 5312 6565 -2 5 1224 420 20 0 0 chr5 83829530 83829579 -68707680 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1224 24 0 0 0 chr5 83830996 83831020 -68706239 + AT_rich Low_complexity Low_complexity 1 24 0 5 1224 214 331 130 19 chr5 83831585 83831739 -68705520 + L2b LINE L2 3205 3375 0 5 1224 279 217 35 62 chr5 83831979 83832092 -68705167 - CYRA11_Mm Unknown Y-chromosome -290 327 218 5 1224 1181 66 0 0 chr5 83832304 83832456 -68704803 + B2_Mm2 SINE B2 1 152 -43 5 1224 284 0 28 0 chr5 83832463 83832499 -68704760 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 5 1224 1997 139 0 24 chr5 83833774 83834106 -68703153 + Lx2 LINE L1 6673 6996 -1 5 1224 207 69 0 0 chr5 83834297 83834326 -68702933 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 5 1224 232 0 24 73 chr5 83835030 83835071 -68702188 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1224 1109 57 7 0 chr5 83835074 83835215 -68702044 - B1_Mus1 SINE Alu -6 142 1 5 1224 1909 117 32 3 chr5 83835413 83835723 -68701536 + Lx2 LINE L1 5050 5368 -509 5 1224 2534 121 100 5 chr5 83835719 83836158 -68701101 - Lx3_Mus LINE L1 -545 6464 5984 5 1224 2880 147 62 53 chr5 83836156 83836702 -68700557 + Lx3A LINE L1 6428 6978 -3 5 1224 8697 152 10 4 chr5 83836696 83838321 -68698938 + Lx2 LINE L1 5357 6991 -6 5 1224 286 316 75 12 chr5 83838640 83838800 -68698459 + Lx8 LINE L1 7299 7468 -5 5 1224 37 23 0 0 chr5 83838800 83838844 -68698415 + AT_rich Low_complexity Low_complexity 1 44 0 5 1224 292 181 64 0 chr5 83838969 83839063 -68698196 + (TA)n Simple_repeat Simple_repeat 1 100 0 5 1224 273 182 0 0 chr5 83839942 83839997 -68697262 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1224 3953 141 24 8 chr5 83840571 83841261 -68695998 + L1_Mus4 LINE L1 5957 6636 0 5 1224 489 62 0 0 chr5 83841348 83841413 -68695846 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1224 192 40 0 0 chr5 83841736 83841761 -68695498 + (TTG)n Simple_repeat Simple_repeat 3 27 0 5 1224 547 308 12 19 chr5 83841792 83841954 -68695305 - B3 SINE B2 -54 162 2 5 1224 280 261 84 74 chr5 83842024 83842119 -68695140 + MTE-int LTR MaLR 558 653 -927 5 1224 261 300 0 14 chr5 83842119 83842190 -68695069 + B3A SINE B2 8 77 -121 5 1224 484 263 58 167 chr5 83842255 83842734 -68694525 + RLTR23 LTR ERV1 4 430 0 5 1224 2507 193 64 5 chr5 83843039 83843618 -68693641 - RMER6C LTR ERVK 0 690 1 5 1224 252 310 79 72 chr5 83843913 83844052 -68693207 - MLT1J-int LTR MaLR -1130 257 118 5 1224 7867 178 36 6 chr5 83844416 83844902 -68692357 + Lx4A LINE L1 5587 6072 -986 5 1224 705 12 0 0 chr5 83844902 83844984 -68692275 + (TG)n Simple_repeat Simple_repeat 1 82 0 5 1224 7867 173 37 6 chr5 83844984 83845930 -68691329 + Lx4A LINE L1 6073 7039 -19 5 1224 183 80 0 0 chr5 83845933 83845958 -68691301 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 5 1224 27 0 0 0 chr5 83846119 83846146 -68691113 + AT_rich Low_complexity Low_complexity 1 27 0 5 1224 26 50 0 0 chr5 83846242 83846282 -68690977 + AT_rich Low_complexity Low_complexity 1 40 0 5 1224 342 298 162 7 chr5 83848246 83848530 -68688729 + L1MCa LINE L1 683 1010 -5498 5 1224 3533 58 16 0 chr5 83848585 83849034 -68688225 - L1Md_F2 LINE L1 -454 6128 5673 5 1224 238 87 21 21 chr5 83849231 83849278 -68687981 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1224 201 147 0 0 chr5 83851691 83851725 -68685534 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 5 1224 198 0 0 0 chr5 83852007 83852029 -68685230 + (TA)n Simple_repeat Simple_repeat 2 23 0 5 1224 238 182 36 0 chr5 83853566 83853621 -68683638 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1224 21 0 0 0 chr5 83854157 83854178 -68683081 + AT_rich Low_complexity Low_complexity 1 21 0 5 1224 1008 138 0 0 chr5 83854586 83854745 -68682514 - Lx3B LINE L1 -311 6662 6504 5 1224 33 0 0 0 chr5 83854745 83854778 -68682481 + AT_rich Low_complexity Low_complexity 1 33 0 5 1224 495 0 0 0 chr5 83854780 83854835 -68682424 + (TTA)n Simple_repeat Simple_repeat 3 57 0 5 1224 2483 68 0 0 chr5 83854847 83855169 -68682090 - L1Md_F2 LINE L1 -12 6570 6249 5 1224 2051 57 0 0 chr5 83855169 83855417 -68681842 + L1Md_F2 LINE L1 5992 6239 -343 5 1224 2316 111 6 17 chr5 83855415 83855762 -68681497 - Lx3B LINE L1 -458 6515 6173 5 1224 792 240 84 31 chr5 83855762 83856038 -68681221 + BGLII_B LTR ERVK 10 241 -264 5 1224 442 211 16 47 chr5 83856269 83856398 -68680861 - Lx3B LINE L1 -799 6174 6050 5 1224 1297 148 20 78 chr5 83856398 83856691 -68680568 + Lx3B LINE L1 6694 6969 -4 5 1224 916 159 6 6 chr5 83856697 83856874 -68680385 + GA-rich Low_complexity Low_complexity 3 179 0 5 1224 200 226 0 16 chr5 83856890 83856953 -68680306 + GA-rich Low_complexity Low_complexity 2 63 0 5 1224 5990 71 16 2 chr5 83857020 83857821 -68679438 - L1Md_F2 LINE L1 -12 6570 5759 5 1224 30 0 0 0 chr5 83857849 83857879 -68679380 + AT_rich Low_complexity Low_complexity 1 30 0 5 1224 216 222 115 44 chr5 83858444 83858557 -68678702 - L2a LINE L2 -87 3339 3219 5 1224 600 53 0 0 chr5 83858892 83858968 -68678291 + (TTCCC)n Simple_repeat Simple_repeat 4 79 0 5 1224 235 82 41 0 chr5 83858981 83859006 -68678253 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 1224 673 50 0 40 chr5 83859006 83859130 -68678129 + (GTTTG)n Simple_repeat Simple_repeat 1 119 0 5 1224 235 82 41 0 chr5 83859130 83859153 -68678106 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 5 1224 709 340 105 18 chr5 83859261 83859662 -68677597 - L2a LINE L2 -539 2880 2445 5 1224 4600 250 55 7 chr5 83859813 83861070 -68676189 - Lx9 LINE L1 -1 7643 6327 5 1224 743 301 25 44 chr5 83861109 83861543 -68675716 - Lx9 LINE L1 -1543 6101 5676 5 1224 1210 171 9 0 chr5 83861555 83861766 -68675493 + ORR1A4 LTR MaLR 109 321 -8 5 1224 3722 251 118 90 chr5 83861770 83863680 -68673579 + ORR1A4-int LTR MaLR 1 1963 0 5 1224 1783 163 31 12 chr5 83863680 83864003 -68673256 + ORR1A4 LTR MaLR 1 329 0 5 1224 375 322 114 25 chr5 83865082 83865327 -68671932 - L2a LINE L2 -1285 2134 1868 5 1224 330 319 27 27 chr5 83865711 83865859 -68671400 - L2a LINE L2 -2 3424 3277 5 1224 444 82 0 0 chr5 83865996 83866057 -68671202 + (GA)n Simple_repeat Simple_repeat 2 62 0 5 1224 480 318 43 167 chr5 83866083 83866412 -68670847 + MTD LTR MaLR 96 383 -38 5 1224 24 0 0 0 chr5 83866529 83866553 -68670706 + AT_rich Low_complexity Low_complexity 1 24 0 5 1224 252 132 0 0 chr5 83867365 83867403 -68669856 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1224 549 0 0 0 chr5 83867403 83867464 -68669795 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1224 252 132 0 0 chr5 83867464 83867478 -68669781 + (CA)n Simple_repeat Simple_repeat 2 15 0 5 1224 680 0 12 0 chr5 83868310 83868390 -68668869 + (GAA)n Simple_repeat Simple_repeat 1 81 0 5 1224 482 170 32 10 chr5 83869558 83869665 -68667594 + Lx4B LINE L1 6882 6984 -74 5 1224 573 294 83 40 chr5 83869735 83870011 -68667248 + Lx7 LINE L1 7025 7312 -384 5 1224 347 0 0 23 chr5 83870048 83870092 -68667167 + (TTA)n Simple_repeat Simple_repeat 2 44 0 5 1224 506 76 12 37 chr5 83870551 83870633 -68666626 + Lx3C LINE L1 6708 6787 -189 5 1224 353 228 11 11 chr5 83870630 83870723 -68666536 + Lx3C LINE L1 6884 6976 0 5 1224 25 0 0 0 chr5 83871022 83871047 -68666212 + AT_rich Low_complexity Low_complexity 1 25 0 5 1224 804 200 0 0 chr5 83871195 83871375 -68665884 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1224 210 118 0 0 chr5 83871729 83871763 -68665496 + (TA)n Simple_repeat Simple_repeat 1 34 0 5 1224 630 39 0 0 chr5 83871790 83871867 -68665392 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 1224 21 0 0 0 chr5 83871874 83871895 -68665364 + AT_rich Low_complexity Low_complexity 1 21 0 5 1224 333 47 0 0 chr5 83871898 83871941 -68665318 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1224 493 234 19 0 chr5 83872024 83872131 -68665128 + Lx8 LINE L1 6336 6444 -1029 5 1224 1199 317 69 25 chr5 83872125 83872760 -68664499 + Lx9 LINE L1 6649 7311 -333 5 1224 1143 257 104 38 chr5 83873407 83873880 -68663379 + Lx9 LINE L1 6962 7465 -179 5 1224 2784 174 153 12 chr5 83874379 83874973 -68662286 + RLTR33 LTR ERVK 1 678 0 5 1224 240 86 0 0 chr5 83875343 83875378 -68661881 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 5 1224 477 34 0 0 chr5 83875383 83875442 -68661817 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1224 278 286 35 195 chr5 83875498 83875672 -68661587 - B4 SINE B4 0 292 147 5 1224 1590 260 100 31 chr5 83875986 83876628 -68660631 - RMER6C LTR ERVK -4 686 1 5 1224 746 257 49 127 chr5 83876692 83876897 -68660362 - B3 SINE B2 -1 194 6 5 1224 1461 143 32 4 chr5 83877751 83878004 -68659255 - Lx LINE L1 -7 6647 6388 6 1224 1560 191 0 0 chr5 83878004 83878298 -68658961 + L1_Mur1 LINE L1 5002 5295 -591 6 1224 5767 101 8 1 chr5 83878303 83879174 -68658085 - L1_Mm LINE L1 -3747 2136 1260 6 1224 3036 64 18 0 chr5 83879169 83879558 -68657701 - L1_Mus1 LINE L1 -159 6408 6013 6 1224 511 160 39 39 chr5 83879560 83879690 -68657569 + Lx2 LINE L1 6867 6996 -1 6 1224 1043 227 13 36 chr5 83879969 83880271 -68656988 + L1VL1 LINE L1 1 295 -6127 6 1224 4606 143 30 30 chr5 83880259 83882390 -68654869 + L1Md_F2 LINE L1 1 1807 -4079 6 1224 12614 66 7 1 chr5 83882379 83884023 -68653236 + L1Md_F2 LINE L1 3936 5589 -297 6 1224 7780 56 7 2 chr5 83884024 83885012 -68652247 + L1Md_F2 LINE L1 5591 6583 -2 6 1224 654 319 60 8 chr5 83885027 83885277 -68651982 + B4 SINE B4 2 264 -28 6 1225 32568 79 29 10 chr5 83887077 83893096 -68644163 - L1Md_F2 LINE L1 -1 6581 465 6 1225 189 0 0 0 chr5 83893312 83893333 -68643926 + (CAA)n Simple_repeat Simple_repeat 1 21 0 6 1225 263 122 20 0 chr5 83893860 83893909 -68643350 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1225 2476 121 27 17 chr5 83894044 83894447 -68642812 + MTB_Mm LTR MaLR 1 407 0 6 1225 22 0 0 0 chr5 83894805 83894827 -68642432 + AT_rich Low_complexity Low_complexity 1 22 0 6 1225 1639 128 19 0 chr5 83894983 83895240 -68642019 - Lx LINE L1 -1 6653 6392 6 1225 359 82 73 90 chr5 83895493 83895591 -68641668 + L1Md_A LINE L1 6486 6577 -5 6 1225 4483 143 33 9 chr5 83897483 83898218 -68639041 - Lx2 LINE L1 -2 6995 6244 6 1225 226 379 31 31 chr5 83898659 83898787 -68638472 - MLT1G3 LTR MaLR -244 351 224 6 1225 1344 25 0 0 chr5 83899319 83899478 -68637781 + B2_Mm1a SINE B2 2 160 -33 6 1225 399 56 0 0 chr5 83899478 83899532 -68637727 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6 1225 1013 90 8 0 chr5 83900176 83900310 -68636949 + B1_Mus1 SINE Alu 1 135 -13 6 1225 405 0 0 0 chr5 83900310 83900355 -68636904 + (CAA)n Simple_repeat Simple_repeat 1 45 0 6 1225 270 239 14 0 chr5 83900355 83900426 -68636833 - L1MA4 LINE L1 -385 5915 5844 6 1225 365 58 19 0 chr5 83900463 83900515 -68636744 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1225 1199 337 59 36 chr5 83900696 83901169 -68636090 + Lx9 LINE L1 6657 7138 -506 6 1225 414 0 0 0 chr5 83901169 83901215 -68636044 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1225 1199 337 59 36 chr5 83901215 83901600 -68635659 + Lx9 LINE L1 7139 7534 -110 6 1225 29 0 0 0 chr5 83901600 83901629 -68635630 + AT_rich Low_complexity Low_complexity 1 29 0 6 1225 21 36 0 0 chr5 83902914 83902942 -68634317 + AT_rich Low_complexity Low_complexity 1 28 0 6 1225 2662 104 42 0 chr5 83903690 83904074 -68633185 + MTB LTR MaLR 1 400 0 6 1225 208 28 54 27 chr5 83904249 83904286 -68632973 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 6 1225 1122 68 7 0 chr5 83904293 83904439 -68632820 - B1_Mus1 SINE Alu 0 148 2 6 1225 1385 198 80 159 chr5 83905422 83905957 -68631302 + RMER17B LTR ERVK 1 493 -465 6 1225 216 97 0 0 chr5 83905978 83906009 -68631250 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1225 242 302 68 97 chr5 83907047 83907071 -68630188 - B2_Mm2 SINE B2 -10 185 161 6 1225 366 23 0 0 chr5 83907071 83907114 -68630145 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1225 296 302 68 97 chr5 83907114 83907265 -68629994 - B3 SINE B2 -35 160 15 6 1225 531 382 32 28 chr5 83907643 83907891 -68629368 + B4 SINE B4 40 288 -4 6 1225 333 0 0 0 chr5 83907909 83907946 -68629313 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1225 321 26 0 0 chr5 83908895 83908934 -68628325 - MusHAL1 LINE L1 -516 2196 2158 6 1225 4451 28 9 4 chr5 83908930 83909467 -68627792 - L1Md_F3 LINE L1 -158 6426 5887 6 1225 1179 36 48 0 chr5 83909467 83909632 -68627627 + L1Md_F3 LINE L1 6412 6584 0 6 1225 2538 94 3 0 chr5 83909642 83910026 -68627233 - MusHAL1 LINE L1 -537 2175 1791 6 1225 577 89 0 47 chr5 83910026 83910132 -68627127 + MusHAL1 LINE L1 2183 2283 -429 6 1225 660 188 295 9 chr5 83910113 83910316 -68626943 + Lx2 LINE L1 6708 6972 -25 6 1225 216 0 0 0 chr5 83910316 83910340 -68626919 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1225 3094 74 28 5 chr5 83910344 83910777 -68626482 + MusHAL1 LINE L1 2266 2708 -4 6 1225 4142 76 0 2 chr5 83911197 83911739 -68625520 - L1_Mus2 LINE L1 -241 6325 5785 6 1225 491 40 40 0 chr5 83911740 83911815 -68625444 - L1Md_F3 LINE L1 0 6584 6507 6 1225 1139 36 7 0 chr5 83911815 83911954 -68625305 - L1_Mus2 LINE L1 -841 5797 5658 6 1225 207 100 0 0 chr5 83912723 83912753 -68624506 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 6 1225 21 0 0 0 chr5 83912822 83912843 -68624416 + AT_rich Low_complexity Low_complexity 1 21 0 6 1225 345 337 11 0 chr5 83913056 83913151 -68624108 + RSINE1 SINE B4 58 153 -12 6 1225 21 0 0 0 chr5 83913788 83913809 -68623450 + AT_rich Low_complexity Low_complexity 1 21 0 6 1225 277 179 0 30 chr5 83914116 83914206 -68623053 - PB1D10 SINE Alu 0 127 39 6 1225 4707 138 13 3 chr5 83914915 83915668 -68621591 - L1_Mm LINE L1 -24 5859 5099 6 1225 6317 77 1 15 chr5 83915687 83916485 -68620774 - L1_Mus2 LINE L1 -1 6565 5779 6 1225 1057 72 22 0 chr5 83916485 83916624 -68620635 + B1_Mm SINE Alu 1 142 -5 6 1225 6317 77 1 15 chr5 83916624 83916683 -68620576 - L1_Mus2 LINE L1 -788 5778 5720 6 1225 2183 142 38 0 chr5 83916668 83917035 -68620224 - L1_Mm LINE L1 -770 5113 4733 6 1225 967 91 23 1 chr5 83917034 83917181 -68620078 + L1_Mus3 LINE L1 5878 6033 -967 6 1225 1120 109 78 10 chr5 83917181 83917385 -68619874 + L1_Mus3 LINE L1 6414 6631 -7 6 1225 681 224 110 15 chr5 83917385 83917476 -68619783 + L1_Mus3 LINE L1 6034 6131 -866 6 1225 392 99 14 0 chr5 83917476 83917547 -68619712 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 6 1225 7261 103 3 0 chr5 83918257 83919898 -68617361 + L1_Mus1 LINE L1 4909 6555 -12 6 1225 649 191 0 26 chr5 83919947 83920103 -68617156 + GA-rich Low_complexity Low_complexity 1 152 0 6 1225 1984 123 51 12 chr5 83920731 83921067 -68616192 - L1_Mus4 LINE L1 -5 6631 6283 6 1225 269 20 19 57 chr5 83921381 83921434 -68615825 + (CAAAA)n Simple_repeat Simple_repeat 3 53 0 6 1225 4852 132 68 6 chr5 83922099 83922916 -68614343 + Lx LINE L1 5781 6648 -6 6 1225 1966 277 157 16 chr5 83923157 83923994 -68613265 + Lx8 LINE L1 4426 4833 -1014 6 1225 396 91 0 0 chr5 83923994 83924060 -68613199 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 6 1225 1966 283 107 42 chr5 83924060 83924434 -68612825 + Lx8 LINE L1 4834 5214 -633 6 1225 270 0 0 0 chr5 83924434 83924464 -68612795 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1225 1966 283 107 42 chr5 83924464 83924974 -68612285 + Lx8 LINE L1 5215 5769 -78 6 1225 421 304 47 37 chr5 83925033 83925197 -68612062 + ORR1E LTR MaLR 31 181 -193 6 1225 525 131 0 0 chr5 83925199 83925306 -68611953 + (TC)n Simple_repeat Simple_repeat 2 108 0 6 1225 374 85 17 0 chr5 83925707 83925766 -68611493 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 6 1225 1112 88 0 0 chr5 83925766 83925913 -68611346 - B1_Mm SINE Alu 0 147 1 6 1225 1505 100 72 4 chr5 83925930 83926181 -68611078 - MusHAL1 LINE L1 -2234 478 211 6 1225 541 302 19 63 chr5 83926179 83926296 -68610963 + Lx8 LINE L1 6200 6313 -1160 6 1225 2259 181 2 28 chr5 83926296 83926728 -68610531 - MTC LTR MaLR 0 421 1 6 1225 541 302 19 63 chr5 83926728 83926815 -68610444 + Lx8 LINE L1 6314 6395 -1078 6 1225 1753 261 62 25 chr5 83926847 83927295 -68609964 - Lx5 LINE L1 -1 7049 6585 6 1225 1020 352 87 7 chr5 83927297 83927909 -68609350 + Lx8 LINE L1 6400 7060 -413 6 1225 270 0 0 0 chr5 83927991 83928021 -68609238 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1225 23 0 0 0 chr5 83928118 83928141 -68609118 + AT_rich Low_complexity Low_complexity 1 23 0 6 1225 467 155 10 0 chr5 83928354 83928457 -68608802 + (TA)n Simple_repeat Simple_repeat 2 105 0 6 1225 394 325 47 23 chr5 83928536 83928665 -68608594 - RSINE1 SINE B4 -28 137 6 6 1225 481 229 25 25 chr5 83929088 83929209 -68608050 + MTC LTR MaLR 295 415 -6 6 1225 1653 254 52 81 chr5 83929213 83929380 -68607879 + MTC-int LTR MaLR 2 164 -1094 6 1225 3012 186 78 22 chr5 83929380 83929726 -68607533 + RMER6D LTR ERVK 1 368 -352 6 1225 198 0 0 0 chr5 83929726 83929748 -68607511 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1225 3012 186 78 22 chr5 83929748 83930079 -68607180 + RMER6D LTR ERVK 369 716 -4 6 1225 1653 254 52 81 chr5 83930079 83930454 -68606805 + MTC-int LTR MaLR 165 528 -730 6 1225 33358 99 14 3 chr5 83930465 83936868 -68600391 + Lx LINE L1 168 6650 -4 6 1225 313 304 147 0 chr5 83936978 83937080 -68600179 + B4A SINE B4 172 288 -4 6 1225 472 301 85 16 chr5 83937889 83938078 -68599181 + MLT1D LTR MaLR 2 203 -302 6 1225 29 47 0 0 chr5 83939460 83939503 -68597756 + AT_rich Low_complexity Low_complexity 1 43 0 6 1225 1682 201 19 65 chr5 83939683 83940051 -68597208 - ORR1B1 LTR MaLR -2 392 42 6 1225 1767 28 5 5 chr5 83940124 83940343 -68596916 - L1Md_F3 LINE L1 -14 6570 6352 6 1225 3819 53 4 0 chr5 83940343 83940811 -68596448 + L1Md_F3 LINE L1 5878 6347 -235 6 1225 451 303 0 0 chr5 83941834 83941943 -68595316 - PB1D9 SINE Alu -5 115 7 6 1225 468 0 0 0 chr5 83942493 83942545 -68594714 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1225 3035 26 0 0 chr5 83942706 83943052 -68594207 + ORR1A0 LTR MaLR 1 346 0 6 1225 21 0 0 0 chr5 83943697 83943718 -68593541 + AT_rich Low_complexity Low_complexity 1 21 0 6 1225 268 344 25 50 chr5 83943745 83943904 -68593355 + MTE-int LTR MaLR 101 255 -1325 6 1225 427 279 121 76 chr5 83944208 83944392 -68592867 - RLTR25B LTR ERVK -11 1092 829 6 1225 185 0 40 0 chr5 83944392 83944417 -68592842 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1225 382 279 121 76 chr5 83944417 83944496 -68592763 - RLTR25B LTR ERVK -200 828 742 6 1225 2553 176 67 4 chr5 83944609 83945104 -68592155 - RLTR25B LTR ERVK -253 775 250 6 1225 992 120 0 6 chr5 83945191 83945276 -68591983 - L1_Mur1 LINE L1 -436 5450 5366 6 1225 222 37 0 0 chr5 83945276 83945303 -68591956 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 6 1225 4103 25 0 2 chr5 83945310 83945787 -68591472 - L1Md_F2 LINE L1 -13 6569 6094 6 1225 992 120 0 6 chr5 83945787 83945852 -68591407 - L1_Mur1 LINE L1 -528 5358 5294 6 1225 1458 95 5 0 chr5 83945861 83946072 -68591187 - L1_Mus2 LINE L1 -2 6564 6353 6 1225 659 109 7 92 chr5 83946432 83946573 -68590686 - L1Md_F2 LINE L1 0 6582 6454 6 1225 25 0 0 0 chr5 83947419 83947444 -68589815 + AT_rich Low_complexity Low_complexity 1 25 0 6 1225 192 200 0 0 chr5 83948202 83948247 -68589012 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1225 23 0 0 0 chr5 83948567 83948590 -68588669 + AT_rich Low_complexity Low_complexity 1 23 0 6 1225 188 35 35 0 chr5 83949858 83949887 -68587372 + (TA)n Simple_repeat Simple_repeat 2 31 0 6 1225 4134 213 53 15 chr5 83949892 83949981 -68587278 - Lx4B LINE L1 -9 7049 6945 6 1225 267 54 0 0 chr5 83949981 83950018 -68587241 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1225 4134 213 53 15 chr5 83950018 83950875 -68586384 - Lx4B LINE L1 -114 6944 6068 6 1225 1260 247 61 77 chr5 83951029 83951520 -68585739 - Lx7 LINE L1 -154 7542 7060 7 1225 180 0 0 0 chr5 83951575 83951595 -68585664 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1225 366 23 0 0 chr5 83951762 83951805 -68585454 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1225 2631 64 0 62 chr5 83951852 83952221 -68585038 - ORR1A1 LTR MaLR 0 346 1 7 1225 527 131 80 10 chr5 83952678 83952778 -68584481 + Lx LINE L1 6536 6642 -12 7 1225 239 292 27 34 chr5 83952795 83952872 -68584387 - L1_Mur3 LINE L1 -475 5405 5325 7 1225 396 0 0 0 chr5 83952872 83952916 -68584343 + (TTA)n Simple_repeat Simple_repeat 2 45 0 7 1225 239 292 27 34 chr5 83952916 83952987 -68584272 - L1_Mur3 LINE L1 -556 5324 5259 7 1225 1058 109 0 0 chr5 83953035 83953182 -68584077 + B1_Mus2 SINE Alu 1 147 0 7 1225 466 53 39 26 chr5 83953183 83953260 -68583999 + (GAAAA)n Simple_repeat Simple_repeat 2 79 0 7 1225 321 318 48 43 chr5 83953589 83953819 -68583440 - L1MC LINE L1 -2857 3289 3059 7 1225 257 68 0 22 chr5 83953819 83953864 -68583395 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 7 1225 310 351 38 73 chr5 83954017 83954278 -68582981 + MLT1B LTR MaLR 3 254 -136 7 1225 298 337 17 11 chr5 83954366 83954543 -68582716 - L1MC LINE L1 -3272 2874 2697 7 1225 265 307 128 13 chr5 83954648 83954952 -68582307 - L1MD LINE L1 -3571 2575 2237 7 1225 276 355 52 82 chr5 83955060 83955195 -68582064 - LTR69 LTR ERVL -7 581 451 7 1225 41 21 0 0 chr5 83955251 83955299 -68581960 + AT_rich Low_complexity Low_complexity 1 48 0 7 1225 201 39 0 0 chr5 83955464 83955490 -68581769 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1225 342 121 0 0 chr5 83955490 83955556 -68581703 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 1225 293 278 8 92 chr5 83955578 83955697 -68581562 - Lx7 LINE L1 -382 7314 7206 7 1225 283 175 99 40 chr5 83955785 83955886 -68581373 - Lx7 LINE L1 -154 7542 7436 7 1225 518 233 90 16 chr5 83955889 83956011 -68581248 + Lx7 LINE L1 6840 6970 -726 7 1225 322 280 54 63 chr5 83956232 83956453 -68580806 + L1MEf LINE L1 746 964 -5236 7 1225 219 150 0 0 chr5 83956481 83956521 -68580738 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 7 1225 447 216 0 0 chr5 83956524 83956612 -68580647 - URR1B DNA MER1_type -101 124 37 7 1225 528 310 28 42 chr5 83957526 83957809 -68579450 - Lx9 LINE L1 -309 7335 7057 7 1225 264 196 131 94 chr5 83959714 83959905 -68577354 - Lx5 LINE L1 -3 7047 6850 7 1225 1740 207 24 6 chr5 83959889 83960289 -68576970 + Lx4B LINE L1 6459 6860 -198 7 1225 997 74 14 0 chr5 83960793 83960941 -68576318 + (TCTA)n Simple_repeat Simple_repeat 3 152 0 7 1225 219 145 43 0 chr5 83960967 83961036 -68576223 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 7 1225 1200 254 116 7 chr5 83961198 83961602 -68575657 + Lx9 LINE L1 7018 7465 -179 7 1225 267 31 0 0 chr5 83961602 83961634 -68575625 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1225 338 206 15 73 chr5 83961637 83961773 -68575486 + Lx9 LINE L1 7516 7643 -1 7 1225 32 43 0 0 chr5 83962563 83962609 -68574650 + AT_rich Low_complexity Low_complexity 1 46 0 7 1225 323 175 32 0 chr5 83963340 83963403 -68573856 + AmnSINE1 SINE SINE 325 389 -186 7 1225 256 337 11 0 chr5 83965201 83965293 -68571966 - ERVL-int LTR ERVL -5209 548 456 7 1225 4612 113 34 21 chr5 83965475 83965800 -68571459 + L1_Mus3 LINE L1 5867 6183 -455 7 1225 7380 17 0 0 chr5 83965800 83966622 -68570637 + RLTR13B2 LTR ERVK 1 822 0 7 1225 4612 113 34 21 chr5 83966622 83967052 -68570207 + L1_Mus3 LINE L1 6184 6632 -6 7 1225 180 111 0 0 chr5 83967056 83967083 -68570176 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1225 21 0 0 0 chr5 83967459 83967480 -68569779 + AT_rich Low_complexity Low_complexity 1 21 0 7 1225 309 313 107 10 chr5 83969002 83969199 -68568060 + Ricksha_b DNA MuDR 388 603 -652 7 1225 6924 162 38 12 chr5 83969586 83971397 -68565862 + Lx3C LINE L1 5123 6974 -2 7 1225 1596 264 88 86 chr5 83971491 83972955 -68564304 + Lx5 LINE L1 5666 7037 -13 7 1225 489 132 25 34 chr5 83972955 83973073 -68564186 + Lx3A LINE L1 6862 6978 -3 7 1225 1596 295 65 45 chr5 83973073 83973086 -68564173 + Lx5 LINE L1 7038 7049 -1 7 1225 274 262 36 0 chr5 83973151 83973235 -68564024 - Ricksha_c DNA MuDR -1958 90 4 7 1225 5270 149 51 35 chr5 83973268 83973898 -68563361 - Lx2 LINE L1 0 6997 6370 7 1225 795 65 176 8 chr5 83973898 83974023 -68563236 - B1_Mm SINE Alu 0 147 2 7 1225 5270 149 51 35 chr5 83974023 83974429 -68562830 - Lx2 LINE L1 -628 6369 5944 7 1225 24 0 0 0 chr5 83974543 83974567 -68562692 + AT_rich Low_complexity Low_complexity 1 24 0 7 1225 21 0 0 0 chr5 83977268 83977289 -68559970 + AT_rich Low_complexity Low_complexity 1 21 0 7 1225 2181 271 25 11 chr5 83977435 83978028 -68559231 - Lx5 LINE L1 -18 7032 6455 7 1225 2123 123 15 6 chr5 83978028 83978362 -68558897 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1225 20248 60 25 21 chr5 83978362 83981017 -68556242 + IAPEz-int LTR ERVK 8 2674 -3807 7 1225 8580 50 9 13 chr5 83980995 83982076 -68555183 + IAPEz-int LTR ERVK 5403 6479 -2 7 1225 2123 123 15 6 chr5 83982078 83982412 -68554847 + IAPLTR1a_Mm LTR ERVK 1 337 0 7 1225 360 0 0 0 chr5 83982415 83982455 -68554804 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 7 1225 2033 262 47 10 chr5 83982464 83983389 -68553870 - Lx5 LINE L1 -733 6727 5513 7 1225 250 226 0 0 chr5 83983964 83984017 -68553242 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1225 21 36 0 0 chr5 83984211 83984239 -68553020 + AT_rich Low_complexity Low_complexity 1 28 0 7 1225 5436 81 4 3 chr5 83984606 83985371 -68551888 - L1Md_F LINE L1 -3118 2765 2000 7 1225 6380 68 22 8 chr5 83985367 83986448 -68550811 - L1Md_F LINE L1 -4381 1502 399 7 1225 2048 129 37 0 chr5 83986476 83986802 -68550457 - Lx2 LINE L1 -2 6995 6658 7 1225 1099 95 0 0 chr5 83986827 83986974 -68550285 - B1_Mm SINE Alu 0 147 1 7 1225 25 31 0 0 chr5 83987471 83987503 -68549756 + AT_rich Low_complexity Low_complexity 1 32 0 7 1225 2688 31 0 35 chr5 83987794 83988133 -68549126 - IAPLTR2b LTR ERVK 0 327 1 7 1225 6328 66 12 11 chr5 83988135 83988961 -68548298 - IAPEz-int LTR ERVK -2 6479 5653 7 1225 2714 64 0 3 chr5 83988956 83989299 -68547960 - IAPEz-int LTR ERVK -4781 1700 1359 7 1225 3440 77 0 14 chr5 83989299 83989953 -68547306 - IAPEz-int LTR ERVK -5819 662 168 7 1225 250 302 0 0 chr5 83989953 83990006 -68547253 - RLTR27 LTR ERVK -34 275 223 7 1225 996 88 99 12 chr5 83990006 83990178 -68547081 - IAPEz-int LTR ERVK -6286 195 9 7 1225 785 106 29 2 chr5 83990179 83990326 -68546933 - IAPLTR2b LTR ERVK 0 411 173 7 1225 577 0 0 0 chr5 83990310 83990378 -68546881 - IAPLTR2b LTR ERVK -343 68 1 7 1225 271 237 13 0 chr5 83990378 83990454 -68546805 + (TA)n Simple_repeat Simple_repeat 1 77 0 7 1225 378 0 0 0 chr5 83990489 83990531 -68546728 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1225 962 292 32 11 chr5 83990614 83990898 -68546361 + Lx7 LINE L1 6875 7164 -532 7 1225 590 196 8 8 chr5 83990995 83991129 -68546130 + Lx4A LINE L1 6920 7053 -5 7 1225 207 0 0 0 chr5 83991130 83991153 -68546106 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 7 1225 191 352 0 32 chr5 83991153 83991247 -68546012 + MIR SINE MIR 118 208 -54 7 1225 1084 279 61 74 chr5 83991904 83992523 -68544736 + Lx8 LINE L1 6827 7437 -36 7 1225 24 32 0 0 chr5 83992732 83992763 -68544496 + AT_rich Low_complexity Low_complexity 1 31 0 7 1225 878 151 0 27 chr5 83992930 83993080 -68544179 - B1_Mus1 SINE Alu 0 148 3 7 1225 1816 88 23 0 chr5 83993119 83993382 -68543877 - L1Md_F2 LINE L1 -661 5222 4954 7 1225 7114 86 6 3 chr5 83993391 83994691 -68542568 + L1Md_F2 LINE L1 5255 6559 -23 7 1225 4025 39 0 6 chr5 83994691 83995247 -68542012 + L1Md_F3 LINE L1 6077 6584 0 7 1225 507 33 0 0 chr5 83996181 83996242 -68541017 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 1225 5635 36 5 0 chr5 83996242 83996911 -68540348 - L1Md_F3 LINE L1 -31 6553 5882 7 1225 7224 34 14 2 chr5 83996912 83997803 -68539456 + L1_Mm LINE L1 3500 4400 -1483 7 1225 1248 73 31 20 chr5 83999534 83999729 -68537530 - L1Md_F2 LINE L1 -3 6579 6383 7 1225 1452 44 0 0 chr5 83999800 83999980 -68537279 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1225 414 0 0 0 chr5 84000000 84000046 -68537213 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1225 1112 140 22 0 chr5 84000482 84000660 -68536599 + B2_Mm2 SINE B2 1 182 -13 2 1225 180 0 0 0 chr5 84000660 84000680 -68536579 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1225 6564 154 19 9 chr5 84001086 84002255 -68535004 - Lx2B LINE L1 -1 6999 5820 4 1225 1583 115 36 15 chr5 84002255 84002529 -68534730 - Lx2B LINE L1 -854 6146 5867 5 1225 208 191 21 0 chr5 84002895 84002942 -68534317 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1225 222 271 0 0 chr5 84003797 84003856 -68533403 + GA-rich Low_complexity Low_complexity 4 62 0 7 1225 26 0 0 0 chr5 84004119 84004145 -68533114 + AT_rich Low_complexity Low_complexity 1 26 0 8 1225 30 45 0 0 chr5 84004318 84004362 -68532897 + AT_rich Low_complexity Low_complexity 1 44 0 9 1225 237 33 0 0 chr5 84005047 84005077 -68532182 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1225 195 69 0 0 chr5 84005077 84005106 -68532153 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1225 1756 285 71 91 chr5 84006309 84006884 -68530375 - Lx6 LINE L1 -3 7457 6879 1 1225 483 18 0 0 chr5 84006884 84006940 -68530319 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1225 1756 285 71 91 chr5 84006940 84007141 -68530118 - Lx6 LINE L1 -582 6878 6697 1 1225 2686 236 52 7 chr5 84007557 84008167 -68529092 + Lx5 LINE L1 6412 7049 -1 1 1225 259 382 78 6 chr5 84008340 84008519 -68528740 - MER58A DNA MER1_type -24 200 9 1 1225 26 30 0 0 chr5 84009425 84009458 -68527801 + AT_rich Low_complexity Low_complexity 1 33 0 1 1225 21 36 0 0 chr5 84009485 84009513 -68527746 + AT_rich Low_complexity Low_complexity 1 28 0 1 1225 183 146 0 0 chr5 84011022 84011063 -68526196 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1225 225 191 114 45 chr5 84011240 84011328 -68525931 - Lx5 LINE L1 -3 7047 6954 1 1225 2652 202 40 28 chr5 84011381 84011926 -68525333 - Lx5 LINE L1 -101 6949 6398 1 1225 1222 116 5 0 chr5 84011923 84012112 -68525147 + L1_Mur2 LINE L1 5096 5285 -592 2 1225 1452 44 0 0 chr5 84012421 84012601 -68524658 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1225 893 99 34 41 chr5 84012601 84012748 -68524511 - B1_Mus1 SINE Alu 0 148 3 2 1225 489 85 37 19 chr5 84012900 84013008 -68524251 + (TA)n Simple_repeat Simple_repeat 2 111 0 2 1225 200 35 35 0 chr5 84013274 84013303 -68523956 + (TTAA)n Simple_repeat Simple_repeat 2 31 0 2 1225 2609 78 0 16 chr5 84013631 84013995 -68523264 + L1Md_F2 LINE L1 6212 6569 -13 2 1225 339 114 83 60 chr5 84014519 84014603 -68522656 - Lx2 LINE L1 -293 6704 6619 2 1225 2770 22 5 131 chr5 84015150 84015570 -68521689 - IAPLTR1_Mm LTR ERVK 0 367 1 2 153 29012 17 1 2 chr5 84015570 84018846 -68518413 - IAPEz-int LTR ERVK 0 6481 3210 2 1226 8177 68 78 16 chr5 84018845 84020071 -68517188 - IAPEz-int LTR ERVK -5168 1313 67 2 1226 1027 85 152 0 chr5 84020042 84020206 -68517053 - IAPEz-int LTR ERVK -6285 196 8 2 1226 2770 22 5 131 chr5 84020206 84020626 -68516633 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1226 369 0 0 0 chr5 84021180 84021221 -68516038 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1226 360 0 0 0 chr5 84021526 84021566 -68515693 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1226 311 0 26 0 chr5 84022512 84022551 -68514708 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 3 1226 231 204 0 0 chr5 84023208 84023257 -68514002 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1226 257 260 14 0 chr5 84024153 84024226 -68513033 - L1MEf LINE L1 -5500 700 627 3 1226 23 33 0 0 chr5 84024694 84024724 -68512535 + AT_rich Low_complexity Low_complexity 1 30 0 3 1226 354 61 0 0 chr5 84024914 84024963 -68512296 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1226 681 239 129 47 chr5 84025473 84025706 -68511553 - Lx5 LINE L1 0 7050 6799 3 1226 5926 129 20 8 chr5 84025706 84026646 -68510613 + Lx2 LINE L1 6045 6995 -2 3 1226 1144 331 39 20 chr5 84026890 84027377 -68509882 + Lx8 LINE L1 6176 6671 -802 3 1226 623 355 29 8 chr5 84027565 84027804 -68509455 - ORR1E LTR MaLR -110 249 6 3 1226 7363 79 7 5 chr5 84028222 84029885 -68507374 + L1Md_F2 LINE L1 4898 6561 -21 3 1226 609 133 0 0 chr5 84031394 84031492 -68505767 + (TA)n Simple_repeat Simple_repeat 2 99 0 4 1226 292 56 0 0 chr5 84031545 84031581 -68505678 - U2 snRNA snRNA -152 36 1 4 1226 2915 104 121 21 chr5 84033131 84033776 -68503483 + L1_Mur1 LINE L1 706 1431 -4455 4 1226 1067 126 10 43 chr5 84033776 84033984 -68503275 + Lx LINE L1 6454 6654 0 4 1226 2869 82 38 63 chr5 84033984 84034260 -68502999 + L1_Mur1 LINE L1 1432 1685 -4201 4 1226 199 29 27 54 chr5 84035812 84035849 -68501410 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4 1226 1921 279 54 45 chr5 84036689 84037266 -68499993 + Lx6 LINE L1 6872 7453 -7 4 1226 311 96 19 0 chr5 84037779 84037831 -68499428 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 4 1226 5116 215 34 8 chr5 84037833 84038914 -68498345 - Lx5 LINE L1 0 7050 5942 4 1226 1801 180 3 0 chr5 84038903 84039230 -68498029 + L1_Mur2 LINE L1 3864 4191 -1686 4 1226 35 0 0 0 chr5 84039235 84039270 -68497989 + AT_rich Low_complexity Low_complexity 1 35 0 4 1226 4578 47 2 12 chr5 84039362 84039945 -68497314 + L1Md_F2 LINE L1 6005 6581 -1 5 1226 280 376 0 0 chr5 84041196 84041289 -68495970 + 7SK RNA RNA 144 236 -95 5 1226 219 114 0 0 chr5 84041713 84041748 -68495511 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1226 7227 117 16 4 chr5 84042409 84043925 -68493334 + L1_Mus4 LINE L1 5097 6628 -8 5 1226 1982 128 0 22 chr5 84046682 84047001 -68490258 + Lx LINE L1 6338 6649 -5 5 1226 2671 54 60 18 chr5 84048646 84049026 -68488233 + MTA_Mm LTR MaLR 1 396 0 5 1226 514 301 27 59 chr5 84049148 84049370 -68487889 + B3 SINE B2 2 216 0 5 1226 932 70 8 0 chr5 84049517 84049646 -68487613 + (TTTTC)n Simple_repeat Simple_repeat 3 132 0 5 1226 2457 81 67 6 chr5 84049667 84050027 -68487232 - L1_Mus2 LINE L1 -2 6564 6183 5 1226 1466 99 0 0 chr5 84050027 84050228 -68487031 + L1_Mus2 LINE L1 5960 6160 -406 5 1226 277 234 216 31 chr5 84050302 84050399 -68486860 + B4A SINE B4 108 222 -70 5 1226 265 320 90 74 chr5 84050564 84050753 -68486506 - Charlie2b DNA MER1_type -2223 559 368 6 1226 1635 42 24 5 chr5 84052499 84052712 -68484547 - L1Md_F3 LINE L1 0 6584 6368 6 1226 21 36 0 0 chr5 84052789 84052817 -68484442 + AT_rich Low_complexity Low_complexity 1 28 0 6 1226 1109 240 79 37 chr5 84053525 84053879 -68483380 - ORR1D1 LTR MaLR -4 370 2 6 1226 2496 302 129 38 chr5 84053896 84054973 -68482286 - ORR1D1-int LTR MaLR -31 1339 165 6 1226 525 331 53 71 chr5 84055033 84055464 -68481795 + Lx9 LINE L1 6937 7355 -289 6 1226 459 0 0 0 chr5 84055464 84055515 -68481744 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 6 1226 525 331 53 71 chr5 84055515 84055629 -68481630 + Lx9 LINE L1 7356 7471 -173 6 1226 23 0 0 0 chr5 84055745 84055768 -68481491 + AT_rich Low_complexity Low_complexity 1 23 0 6 1226 294 299 38 19 chr5 84055818 84055935 -68481324 + PB1D7 SINE Alu 1 120 0 6 1226 426 20 0 0 chr5 84056074 84056125 -68481134 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1226 508 311 0 0 chr5 84056396 84056528 -68480731 - B1_Mur2 SINE Alu -17 132 1 6 1226 212 357 93 25 chr5 84056660 84056778 -68480481 - ID_B1 SINE B4 -8 216 91 7 1226 292 250 49 20 chr5 84057280 84057382 -68479877 + Lx9 LINE L1 7352 7456 -188 7 1226 555 29 0 0 chr5 84057383 84057452 -68479807 + (TC)n Simple_repeat Simple_repeat 1 69 0 7 1226 336 24 0 0 chr5 84057453 84057494 -68479765 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1226 402 281 142 35 chr5 84058577 84058910 -68478349 - RMER15 LTR ERVL -140 435 1 7 1226 385 298 135 12 chr5 84059499 84059988 -68477271 - L1MC LINE L1 -1213 4933 4385 7 1226 1079 312 105 18 chr5 84060148 84061247 -68476012 - L1MC LINE L1 -2040 4106 2913 7 1226 329 104 336 28 chr5 84061963 84062073 -68475186 - B2_Mm2 SINE B2 -5 190 47 7 1226 1124 131 17 0 chr5 84062122 84062297 -68474962 - B2_Mm1t SINE B2 -14 179 2 7 1226 242 298 118 7 chr5 84062992 84063144 -68474115 - L1MA7 LINE L1 -29 6262 6094 7 1226 564 344 99 89 chr5 84063782 84063913 -68473346 - MTE-int LTR MaLR -54 1526 1401 7 1226 252 0 0 0 chr5 84063913 84063941 -68473318 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1226 564 344 99 89 chr5 84063941 84064336 -68472923 - MTE-int LTR MaLR -180 1400 995 7 1226 609 328 191 18 chr5 84064595 84065083 -68472176 - MTE-int LTR MaLR -948 632 61 7 1226 5651 79 1 1 chr5 84065269 84066013 -68471246 + L1_Mus2 LINE L1 5813 6556 -10 8 1226 204 154 0 0 chr5 84066034 84066086 -68471173 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 8 1226 207 0 0 0 chr5 84066171 84066194 -68471065 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1226 261 0 0 0 chr5 84066210 84066239 -68471020 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1226 1410 147 0 4 chr5 84066606 84066831 -68470428 - MT2B LTR ERVL -28 573 350 8 1226 373 233 22 0 chr5 84066832 84066922 -68470337 - ORR1A3-int LTR MaLR -1226 737 646 8 1226 336 234 117 31 chr5 84066922 84066954 -68470305 - MT2B LTR ERVL -462 121 1 8 1226 33 56 0 0 chr5 84068174 84068228 -68469031 + AT_rich Low_complexity Low_complexity 1 54 0 8 1226 446 33 17 0 chr5 84068248 84068308 -68468951 + (TG)n Simple_repeat Simple_repeat 1 61 0 8 1226 402 21 0 0 chr5 84068308 84068354 -68468905 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 1226 231 33 0 0 chr5 84068575 84068600 -68468659 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1226 441 0 0 0 chr5 84068600 84068649 -68468610 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1226 578 90 22 0 chr5 84069613 84069702 -68467557 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 9 1226 270 0 0 0 chr5 84069703 84069733 -68467526 + (CTATT)n Simple_repeat Simple_repeat 1 30 0 9 1226 201 196 0 0 chr5 84070180 84070226 -68467033 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1226 1673 138 53 31 chr5 84070400 84070721 -68466538 + Lx LINE L1 6321 6648 -6 9 1226 627 135 0 0 chr5 84071193 84071297 -68465962 - URR1B DNA MER1_type 0 225 122 9 1226 224 312 0 0 chr5 84072491 84072555 -68464704 - MIRb SINE MIR -15 253 190 9 1226 191 146 0 24 chr5 84072976 84073018 -68464241 + (TCTCTG)n Simple_repeat Simple_repeat 3 43 0 9 1226 432 0 0 0 chr5 84073136 84073184 -68464075 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1226 315 0 0 0 chr5 84073184 84073218 -68464041 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1226 6109 115 17 13 chr5 84073384 84074335 -68462924 + Lx3A LINE L1 6023 6977 -4 1 1226 605 316 61 14 chr5 84074385 84074597 -68462662 + B4 SINE B4 68 289 -3 1 1226 22 0 0 0 chr5 84074781 84074803 -68462456 + AT_rich Low_complexity Low_complexity 1 22 0 1 1226 286 266 0 0 chr5 84075924 84075988 -68461271 + ID_B1 SINE B4 161 224 0 1 1226 1933 249 151 15 chr5 84076248 84076831 -68460428 - Lx6 LINE L1 -5 7455 6794 1 1226 2732 138 39 99 chr5 84076980 84077656 -68459603 - RMER17D2 LTR ERVK -149 660 26 1 1226 260 319 120 60 chr5 84078074 84078274 -68458985 - MER20 DNA MER1_type -5 214 3 1 1226 264 30 0 0 chr5 84079173 84079206 -68458053 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1226 408 228 38 0 chr5 84080908 84080987 -68456272 + B1_Mur2 SINE Alu 42 123 -26 1 1226 1085 83 13 0 chr5 84081030 84081187 -68456072 + (TATATG)n Simple_repeat Simple_repeat 1 159 0 1 1226 208 264 19 0 chr5 84082045 84082098 -68455161 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 1 1226 24 0 0 0 chr5 84082259 84082283 -68454976 + AT_rich Low_complexity Low_complexity 1 24 0 1 1226 1953 67 72 20 chr5 84083914 84084206 -68453053 + IAPLTR2b LTR ERVK 1 307 -20 1 1226 437 217 45 19 chr5 84084231 84084386 -68452873 - Lx9 LINE L1 -9 7635 7477 1 1226 333 198 0 0 chr5 84084386 84084467 -68452792 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 1226 1735 232 27 88 chr5 84084467 84085061 -68452198 - Lx9 LINE L1 -127 7517 6960 1 1226 485 200 64 45 chr5 84085104 84085214 -68452045 - B1_Mur4 SINE Alu 0 150 39 1 1226 3374 120 0 2 chr5 84085477 84085976 -68451283 - L1_Mus3 LINE L1 0 6638 6141 1 1226 3313 123 156 9 chr5 84085981 84086564 -68450695 - L1_Mus2 LINE L1 -6 6560 5892 1 1226 791 58 10 0 chr5 84086563 84086666 -68450593 + L1_Mus2 LINE L1 5802 5905 -733 1 1226 452 33 33 0 chr5 84086883 84086944 -68450315 + (CATA)n Simple_repeat Simple_repeat 2 64 0 1 1226 456 19 0 0 chr5 84087671 84087724 -68449535 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1226 226 73 82 35 chr5 84088437 84088522 -68448737 + T-rich Low_complexity Low_complexity 4 92 0 1 1226 201 339 76 0 chr5 84088788 84088906 -68448353 + L2a LINE L2 3075 3201 -225 1 1226 1020 102 0 33 chr5 84089156 84089300 -68447959 + B1_Mus2 SINE Alu 1 140 -7 1 1226 266 0 29 0 chr5 84089300 84089334 -68447925 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1226 490 329 39 26 chr5 84089622 84089853 -68447406 - Lx9 LINE L1 -269 7375 7142 1 1226 227 333 25 13 chr5 84089855 84089934 -68447325 + Lx8 LINE L1 7253 7332 -141 1 1226 26 50 0 0 chr5 84090085 84090125 -68447134 + AT_rich Low_complexity Low_complexity 1 40 0 1 1226 1050 311 89 26 chr5 84090251 84090948 -68446311 + L1M2 LINE L1 4500 5240 -903 1 1226 468 0 0 0 chr5 84091887 84091939 -68445320 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1226 375 78 0 0 chr5 84091940 84091991 -68445268 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1226 263 101 89 0 chr5 84093461 84093540 -68443719 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 1226 917 47 8 0 chr5 84093609 84093738 -68443521 - L1Md_F2 LINE L1 -12 6570 6441 1 1226 430 298 50 65 chr5 84094191 84094392 -68442867 + RMER15 LTR ERVL 311 508 -67 1 1226 291 345 118 39 chr5 84094563 84094741 -68442518 - ID_B1 SINE B4 -32 192 1 1 1226 7597 161 20 3 chr5 84095837 84097124 -68440135 - Lx4A LINE L1 -163 6895 5587 1 1226 2200 134 148 0 chr5 84097149 84097575 -68439684 + L1_Mur2 LINE L1 4811 5299 -578 1 1226 754 201 30 15 chr5 84097569 84097766 -68439493 + Lx3C LINE L1 6035 6234 -742 1 1226 2462 178 19 14 chr5 84097771 84098272 -68438987 - Lx2B LINE L1 -741 6259 5755 1 1226 21 0 0 0 chr5 84098305 84098326 -68438933 + AT_rich Low_complexity Low_complexity 1 21 0 1 1226 486 332 73 52 chr5 84098693 84099019 -68438240 - MLT1A0 LTR MaLR -19 346 14 1 1226 1157 307 53 46 chr5 84099019 84099435 -68437824 - MTD LTR MaLR 0 419 1 1 1226 286 243 68 0 chr5 84099516 84099590 -68437669 - MER5A1 DNA MER1_type -40 126 48 1 1226 718 248 103 60 chr5 84099606 84100053 -68437206 - RLTR20C LTR ERVK -9 569 3 1 1226 4410 21 2 0 chr5 84100053 84100564 -68436695 - L1Md_F2 LINE L1 -446 6136 5625 1 1226 3045 56 66 0 chr5 84100564 84100959 -68436300 + L1Md_F2 LINE L1 6150 6570 -12 1 1226 6529 121 45 12 chr5 84101063 84102311 -68434948 - Lx LINE L1 -6 6648 5363 1 1226 703 277 95 36 chr5 84102369 84102706 -68434553 + RLTR10D LTR ERVK 3 359 0 1 1226 296 24 24 0 chr5 84102881 84102922 -68434337 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1226 201 121 0 0 chr5 84103308 84103341 -68433918 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 1 1226 313 365 58 0 chr5 84103352 84103456 -68433803 - PB1D10 SINE Alu -7 110 1 1 1226 25 65 0 0 chr5 84103475 84103521 -68433738 + AT_rich Low_complexity Low_complexity 1 46 0 1 1226 373 270 36 0 chr5 84103693 84103804 -68433455 + PB1D9 SINE Alu 1 115 -5 1 1226 264 91 0 0 chr5 84104483 84104527 -68432732 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1226 505 281 126 45 chr5 84104642 84104840 -68432419 - Lx7 LINE L1 -343 7130 6917 1 1226 1033 71 0 0 chr5 84104862 84104989 -68432270 + L1Md_F2 LINE L1 5460 5586 -297 1 1226 8137 46 3 1 chr5 84104989 84105983 -68431276 + L1Md_F2 LINE L1 5587 6582 0 1 1226 1213 112 0 30 chr5 84105984 84106186 -68431073 + L1Md_F2 LINE L1 6384 6579 -3 1 1226 402 21 0 0 chr5 84107481 84107528 -68429731 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1226 257 121 0 17 chr5 84108312 84108371 -68428888 - Lx9 LINE L1 0 7644 7587 1 1226 22 0 0 0 chr5 84108472 84108494 -68428765 + AT_rich Low_complexity Low_complexity 1 22 0 1 1226 471 113 0 0 chr5 84108544 84108615 -68428644 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1226 354 417 33 0 chr5 84108620 84108771 -68428488 - RSINE1 SINE B4 -6 159 4 1 1226 622 301 98 0 chr5 84108892 84109075 -68428184 - B3 SINE B2 -10 206 6 1 1226 308 127 0 27 chr5 84109122 84109195 -68428064 + L1Md_T LINE L1 6511 6581 -1 1 1226 212 0 36 0 chr5 84110627 84110655 -68426604 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 1 1226 706 102 0 87 chr5 84110655 84110838 -68426421 + T-rich Low_complexity Low_complexity 4 170 0 1 1226 812 293 10 0 chr5 84110838 84111036 -68426223 - B3 SINE B2 -4 212 13 1 1226 248 322 22 0 chr5 84111431 84111521 -68425738 - Lx9 LINE L1 -354 7290 7199 1 1226 220 333 0 0 chr5 84111725 84111782 -68425477 + PB1 SINE Alu 12 68 -59 1 1226 23 0 0 0 chr5 84112027 84112050 -68425209 + AT_rich Low_complexity Low_complexity 1 23 0 1 1226 1191 296 121 36 chr5 84113525 84114184 -68423075 + Lx7 LINE L1 6307 7021 -675 1 1226 268 222 137 29 chr5 84114212 84114314 -68422945 + Lx7 LINE L1 7579 7691 -5 1 1226 3871 23 0 0 chr5 84114323 84114796 -68422463 - L1_Mm LINE L1 -3617 2266 1794 1 1226 4198 34 0 0 chr5 84114796 84115292 -68421967 + L1Md_T LINE L1 6085 6580 -2 1 1226 519 308 68 36 chr5 84116781 84117000 -68420259 - Lx9 LINE L1 -726 6918 6693 1 1226 903 331 36 11 chr5 84117086 84117446 -68419813 - Lx9 LINE L1 -802 6842 6474 1 1226 630 362 61 4 chr5 84117568 84117815 -68419444 + Lx8 LINE L1 7069 7329 -144 1 1226 243 0 0 0 chr5 84118406 84118433 -68418826 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1226 413 164 0 0 chr5 84119083 84119150 -68418109 - U4 snRNA snRNA -78 67 1 1 1226 332 360 54 14 chr5 84119533 84119809 -68417450 - MLT1H-int LTR MaLR -900 509 223 1 1226 291 28 0 0 chr5 84120210 84120246 -68417013 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1 1226 318 340 21 0 chr5 84120475 84120572 -68416687 + MER45A DNA Tip100 28 126 -52 1 1226 5167 73 4 29 chr5 84123018 84123750 -68413509 + L1Md_F2 LINE L1 5856 6569 -13 1 1226 28 71 0 0 chr5 84123927 84123983 -68413276 + AT_rich Low_complexity Low_complexity 1 56 0 1 1226 189 0 0 0 chr5 84125629 84125650 -68411609 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1226 461 47 0 15 chr5 84125650 84125714 -68411545 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1226 593 384 62 13 chr5 84126075 84126610 -68410649 + RMER15-int LTR ERVL 162 722 -4277 1 1226 825 330 60 32 chr5 84126755 84127252 -68410007 + RMER15-int LTR ERVL 1326 1836 -3163 1 1226 935 354 70 60 chr5 84127427 84128142 -68409117 + RMER15-int LTR ERVL 4275 4996 -3 1 1226 230 183 31 146 chr5 84128151 84128202 -68409057 + RMER15 LTR ERVL 14 60 -515 1 1226 4490 62 0 3 chr5 84128202 84128771 -68408488 + L1Md_F2 LINE L1 6015 6581 -1 1 1226 230 183 31 146 chr5 84128771 84128815 -68408444 + RMER15 LTR ERVL 61 98 -477 1 1226 11181 89 12 8 chr5 84128838 84129570 -68407689 + L1Md_F2 LINE L1 3987 4731 -1152 1 1226 292 22 44 0 chr5 84129570 84129615 -68407644 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1226 11181 89 12 8 chr5 84129615 84130475 -68406784 + L1Md_F2 LINE L1 4732 5586 -297 1 1226 6850 95 7 33 chr5 84130475 84131496 -68405763 + L1Md_F2 LINE L1 5587 6580 -2 1 1226 728 257 0 6 chr5 84131499 84131671 -68405588 + Lx6 LINE L1 7275 7445 -15 1 1226 572 205 124 31 chr5 84131709 84131870 -68405389 - Lx6 LINE L1 -440 7020 6845 1 1226 27 49 0 0 chr5 84133247 84133288 -68403971 + AT_rich Low_complexity Low_complexity 1 41 0 1 1226 22 56 0 0 chr5 84133571 84133607 -68403652 + AT_rich Low_complexity Low_complexity 1 36 0 1 1226 324 214 20 39 chr5 84133806 84133908 -68403351 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 1 1226 4711 151 18 2 chr5 84135358 84136181 -68401078 - Lx3A LINE L1 -1315 5666 4826 1 1226 1758 52 9 0 chr5 84136178 84136391 -68400868 + L1Md_F2 LINE L1 5371 5585 -298 1 1226 6805 83 53 4 chr5 84136392 84137339 -68399920 + L1Md_F2 LINE L1 5587 6579 -3 1 1226 481 215 72 197 chr5 84137347 84137596 -68399663 - Lx3A LINE L1 -1074 4812 4595 1 1226 6764 49 12 1 chr5 84137605 84138458 -68398801 - L1Md_F3 LINE L1 0 6584 5723 1 1226 1375 53 0 0 chr5 84138453 84138622 -68398637 + L1Md_F3 LINE L1 5546 5714 -169 1 1226 1384 147 4 0 chr5 84138619 84138857 -68398402 - Lx3A LINE L1 -1268 4609 4371 1 1226 532 250 151 11 chr5 84138969 84139155 -68398104 - B3 SINE B2 -4 212 1 1 1226 544 205 87 39 chr5 84139356 84139483 -68397776 + B1_Mur2 SINE Alu 3 135 -14 1 1226 504 0 0 0 chr5 84139483 84139539 -68397720 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 1 1226 6540 114 61 11 chr5 84139568 84140629 -68396630 - Lx LINE L1 -12 6642 5529 2 1226 242 209 0 0 chr5 84140629 84140672 -68396587 + RLTR13D3 LTR ERVK 1 43 -1071 2 1226 249 167 0 0 chr5 84141113 84141155 -68396104 + B2_Mm2 SINE B2 1 42 -153 2 1226 342 234 114 46 chr5 84141416 84141570 -68395689 + RLTR13D3 LTR ERVK 981 1114 0 2 1226 3293 171 15 0 chr5 84141570 84142174 -68395085 - Lx LINE L1 -349 5534 4922 2 1226 241 273 49 49 chr5 84142182 84142263 -68394996 + B1_Mur2 SINE Alu 69 149 0 2 1226 6163 120 34 6 chr5 84142430 84143338 -68393921 - L1_Mus3 LINE L1 0 6638 5713 2 1226 357 47 15 30 chr5 84143338 84143404 -68393855 + (TTG)n Simple_repeat Simple_repeat 2 66 0 2 1226 6163 120 34 6 chr5 84143404 84143486 -68393773 - L1_Mus3 LINE L1 -926 5712 5621 2 1226 1428 148 4 0 chr5 84143478 84143728 -68393531 - L1_Mus3 LINE L1 -1410 4473 4223 2 1226 2193 73 3 0 chr5 84143730 84144017 -68393242 + L1Md_F2 LINE L1 5299 5586 -297 2 1226 7344 80 0 20 chr5 84144017 84144228 -68393031 + L1Md_F2 LINE L1 5587 5797 -785 2 1226 995 93 7 0 chr5 84144228 84144368 -68392891 + B1_Mus2 SINE Alu 1 141 -6 2 1226 423 0 0 0 chr5 84144370 84144417 -68392842 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 1226 7344 80 0 20 chr5 84144417 84145215 -68392044 + L1Md_F2 LINE L1 5798 6579 -3 2 1226 10980 164 196 9 chr5 84145287 84147495 -68389764 - L1_Mus3 LINE L1 -1651 4232 1554 2 1226 1567 170 119 19 chr5 84147495 84147872 -68389387 - RLTR9F LTR ERVK 0 415 1 2 153 10980 198 144 16 chr5 84147872 84148807 -68388452 - L1_Mus3 LINE L1 -4330 1553 552 2 1227 380 333 62 34 chr5 84148821 84149029 -68388230 - B3 SINE B2 0 216 3 2 1227 254 279 12 25 chr5 84149101 84149182 -68388077 + Lx9 LINE L1 7076 7155 -489 2 1227 386 285 101 74 chr5 84149900 84150048 -68387211 - RSINE1 SINE B4 0 165 14 2 1227 222 37 0 0 chr5 84150244 84150271 -68386988 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1227 2652 264 176 19 chr5 84150808 84152094 -68385165 - RMER1A Other Other -2 1028 1 2 1227 1093 103 6 6 chr5 84152629 84152805 -68384454 + (TTCC)n Simple_repeat Simple_repeat 2 177 0 2 1227 1310 158 9 0 chr5 84152821 84153042 -68384217 - Lx2 LINE L1 0 6997 6775 2 1227 444 65 0 206 chr5 84153042 84153139 -68384120 - Lx2 LINE L1 -354 6643 6567 2 1227 2059 106 64 0 chr5 84153137 84153448 -68383811 + Lx2 LINE L1 6233 6563 -434 2 1227 3505 36 0 0 chr5 84153664 84154185 -68383074 - L1Md_F2 LINE L1 -600 5982 5462 2 1227 4860 46 5 0 chr5 84154185 84154777 -68382482 + L1Md_F2 LINE L1 5987 6581 -1 2 1227 32 0 0 0 chr5 84155615 84155647 -68381612 + AT_rich Low_complexity Low_complexity 1 32 0 2 1227 21 36 0 0 chr5 84155700 84155728 -68381531 + AT_rich Low_complexity Low_complexity 1 28 0 2 1227 493 139 20 10 chr5 84155849 84155951 -68381308 - Lx9 LINE L1 -8 7636 7534 2 1227 25 0 0 0 chr5 84156306 84156331 -68380928 + AT_rich Low_complexity Low_complexity 1 25 0 2 1227 330 0 60 0 chr5 84157162 84157212 -68380047 + (TTG)n Simple_repeat Simple_repeat 2 54 0 2 1227 2743 51 34 8 chr5 84157212 84157568 -68379691 - L1Md_F2 LINE L1 -13 6569 6205 2 1227 198 0 0 0 chr5 84158889 84158911 -68378348 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 1227 363 121 0 0 chr5 84158936 84158994 -68378265 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1227 22 0 0 0 chr5 84159997 84160019 -68377240 + AT_rich Low_complexity Low_complexity 1 22 0 2 1227 4624 87 3 3 chr5 84160197 84160833 -68376426 + L1Md_F2 LINE L1 5947 6582 0 2 1227 2646 113 27 5 chr5 84161685 84162095 -68375164 - BGLII LTR ERVK -2 419 1 2 1227 2767 201 143 85 chr5 84162281 84163120 -68374139 - RMER19B LTR ERVK -12 890 3 2 1227 207 0 0 0 chr5 84163732 84163755 -68373504 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 1227 21 36 0 0 chr5 84163996 84164024 -68373235 + AT_rich Low_complexity Low_complexity 1 28 0 2 1227 461 321 51 0 chr5 84164397 84164534 -68372725 - B3A SINE B2 -21 177 34 2 1227 36 23 0 0 chr5 84164548 84164591 -68372668 + AT_rich Low_complexity Low_complexity 1 43 0 2 1227 204 292 0 0 chr5 84164676 84164748 -68372511 + A-rich Low_complexity Low_complexity 1 72 0 2 1227 2496 61 12 3 chr5 84164754 84165082 -68372177 + IAPEY_LTR LTR ERVK 55 385 0 2 1227 1064 231 82 94 chr5 84165264 84165594 -68371665 - Lx9 LINE L1 -418 7226 6901 2 1227 329 98 98 0 chr5 84165627 84165688 -68371571 + Lx9 LINE L1 7401 7467 -177 2 1227 797 176 7 0 chr5 84165878 84166020 -68371239 - B1_Mus1 SINE Alu 0 148 6 2 1227 274 293 7 109 chr5 84165912 84166050 -68371209 - MT2B LTR ERVL -337 264 141 2 1227 647 329 28 20 chr5 84166115 84166369 -68370890 + MTD LTR MaLR 3 258 -161 2 1227 543 31 0 0 chr5 84166748 84166813 -68370446 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1227 856 94 123 0 chr5 84167235 84167373 -68369886 - L1_Mus2 LINE L1 0 6566 6412 2 1227 1143 42 0 20 chr5 84167374 84167520 -68369739 + L1_Mus2 LINE L1 6195 6337 -229 2 1227 283 331 42 10 chr5 84169078 84169270 -68367989 + L1MA6 LINE L1 6076 6273 -27 2 1227 25 90 0 0 chr5 84169297 84169364 -68367895 + AT_rich Low_complexity Low_complexity 1 67 0 2 1227 1138 295 24 16 chr5 84169738 84170162 -68367097 - L1_Mur3 LINE L1 -3266 2614 2188 2 1227 708 52 0 0 chr5 84170168 84170265 -68366994 + (TC)n Simple_repeat Simple_repeat 1 97 0 2 1227 882 278 24 0 chr5 84170350 84170602 -68366657 + L1_Mur3 LINE L1 5462 5719 -161 2 1227 2378 239 55 56 chr5 84170604 84171530 -68365729 + L1VL2 LINE L1 9 866 -5469 2 1227 6767 178 61 19 chr5 84171525 84172928 -68364331 + L1_Mm LINE L1 3653 5115 -768 2 1227 1102 151 14 14 chr5 84172929 84173137 -68364122 + L1_Mus3 LINE L1 6427 6634 -4 2 1227 23 0 0 0 chr5 84176972 84176995 -68360264 + AT_rich Low_complexity Low_complexity 1 23 0 2 1227 1717 71 0 0 chr5 84177542 84177766 -68359493 + L1_Mus1 LINE L1 6344 6567 0 2 1227 404 193 34 0 chr5 84178025 84178144 -68359115 - Lx9 LINE L1 -2 7642 7520 2 1227 6519 136 72 2 chr5 84178143 84179276 -68357983 - Lx2 LINE L1 0 6997 5786 2 1227 239 298 53 0 chr5 84179693 84179787 -68357472 + L1M3 LINE L1 5165 5263 -877 2 1227 326 184 26 0 chr5 84179944 84180020 -68357239 - Lx9 LINE L1 -26 7618 7541 2 1227 330 26 0 0 chr5 84180035 84180074 -68357185 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1227 21 0 0 0 chr5 84180129 84180150 -68357109 + AT_rich Low_complexity Low_complexity 1 21 0 2 1227 1657 275 27 31 chr5 84181552 84181925 -68355334 - RMER19C LTR ERVK 0 611 238 2 1227 2630 117 38 2 chr5 84181925 84182318 -68354941 - MTB_Mm LTR MaLR 0 407 1 2 1227 1657 275 27 31 chr5 84182318 84182432 -68354827 - RMER19C LTR ERVK -374 237 126 2 1227 281 319 66 53 chr5 84182545 84182697 -68354562 - RLTR14 LTR ERV1 -3 379 226 2 1227 1087 78 0 0 chr5 84182833 84182974 -68354285 + B1_Mus1 SINE Alu 2 142 -6 2 1227 325 288 0 43 chr5 84183149 84183265 -68353994 + MTD LTR MaLR 6 116 -303 2 1227 585 0 0 0 chr5 84183265 84183330 -68353929 + (TC)n Simple_repeat Simple_repeat 2 66 0 2 1227 3526 87 8 0 chr5 84183343 84183828 -68353431 - L1_Mus1 LINE L1 0 6567 6079 2 1227 3766 78 11 0 chr5 84183828 84184451 -68352808 + L1Md_F2 LINE L1 5457 6086 -496 2 1227 486 204 0 0 chr5 84184542 84184650 -68352609 + GA-rich Low_complexity Low_complexity 2 109 0 2 1227 44 35 0 0 chr5 84184830 84184888 -68352371 + AT_rich Low_complexity Low_complexity 1 58 0 2 1227 4967 161 5 17 chr5 84184976 84185850 -68351409 + Lx LINE L1 5790 6652 -2 2 1227 675 300 35 15 chr5 84185905 84186108 -68351151 - B3 SINE B2 -8 208 2 2 1227 18993 125 13 93 chr5 84186651 84192468 -68344791 + L1_Mus1 LINE L1 1642 6566 -1 2 1227 983 167 40 65 chr5 84192483 84192733 -68344526 + L1_Mur2 LINE L1 3566 3808 -2069 2 1227 329 0 24 0 chr5 84192733 84192774 -68344485 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 2 1227 983 167 40 65 chr5 84192774 84192798 -68344461 + L1_Mur2 LINE L1 3809 3832 -2045 2 1227 372 129 43 0 chr5 84192798 84192868 -68344391 + L1_Mur2 LINE L1 4213 4285 -1592 2 1227 325 243 0 14 chr5 84192877 84192948 -68344311 + Lx4B LINE L1 6874 6943 -115 2 1227 2242 192 99 14 chr5 84192946 84193433 -68343826 + Lx4A LINE L1 6180 6707 -351 2 1227 1717 182 42 15 chr5 84193453 84193787 -68343472 - L1_Mur2 LINE L1 -66 5811 5469 2 1227 1154 204 34 0 chr5 84193788 84193994 -68343265 + Lx4A LINE L1 6738 6950 -108 2 1227 1633 239 82 15 chr5 84194123 84194210 -68343049 + RLTR31A_Mm LTR ERVK 1 88 -496 2 1227 630 0 0 0 chr5 84194210 84194280 -68342979 + (GA)n Simple_repeat Simple_repeat 2 71 0 2 1227 1633 239 82 15 chr5 84194280 84194656 -68342603 + RLTR31A_Mm LTR ERVK 89 494 -90 2 1227 659 117 0 43 chr5 84194651 84194767 -68342492 - MTB LTR MaLR -296 111 1 2 1227 6284 109 43 68 chr5 84194767 84195893 -68341366 - MTB-int LTR MaLR 0 1098 1 2 1227 2802 103 5 2 chr5 84195893 84196292 -68340967 - MTB LTR MaLR 0 400 1 2 1227 229 325 62 0 chr5 84196589 84196669 -68340590 + L1M4b LINE L1 999 1083 -6251 2 1227 27 29 0 0 chr5 84196919 84196953 -68340306 + AT_rich Low_complexity Low_complexity 1 34 0 2 1227 24 32 0 0 chr5 84197216 84197247 -68340012 + AT_rich Low_complexity Low_complexity 1 31 0 2 1227 1120 74 0 0 chr5 84197789 84197937 -68339322 + B1_Mus1 SINE Alu 1 148 0 2 1227 270 132 0 0 chr5 84198727 84198780 -68338479 + (T)n Simple_repeat Simple_repeat 1 53 0 2 1227 1550 44 59 5 chr5 84199663 84199867 -68337392 + L1Md_F2 LINE L1 6364 6578 -4 2 1227 5784 190 12 18 chr5 84199897 84201039 -68336220 + Lx2B LINE L1 5861 6996 -4 2 1227 1424 263 49 25 chr5 84201244 84201649 -68335610 - Lx6 LINE L1 -772 6688 6274 2 1227 5653 98 14 0 chr5 84201888 84202281 -68334978 - MusHAL1 LINE L1 -1825 1528 1125 2 1227 216 0 0 0 chr5 84202281 84202305 -68334954 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1227 5653 102 12 0 chr5 84202305 84202841 -68334418 - MusHAL1 LINE L1 -2229 1124 588 2 1227 8115 42 7 1 chr5 84202842 84204166 -68333093 - L1Md_F2 LINE L1 -5 6577 5244 2 1227 1492 245 94 39 chr5 84204201 84204435 -68332824 + Lx6 LINE L1 6687 7035 -425 2 1227 1072 203 14 0 chr5 84204435 84204657 -68332602 - URR1A DNA MER1_type -1 225 1 2 1227 1492 285 60 42 chr5 84204657 84205071 -68332188 + Lx6 LINE L1 7036 7454 -6 2 1227 270 147 44 0 chr5 84205902 84205970 -68331289 + GA-rich Low_complexity Low_complexity 3 73 0 2 1227 336 273 0 0 chr5 84206123 84206200 -68331059 - B3A SINE B2 -121 77 1 2 1227 24 53 0 0 chr5 84206805 84206843 -68330416 + AT_rich Low_complexity Low_complexity 1 38 0 2 1227 714 281 76 23 chr5 84209506 84209768 -68327491 - MTEb LTR MaLR 0 379 104 2 1227 29 0 0 0 chr5 84210549 84210578 -68326681 + AT_rich Low_complexity Low_complexity 1 29 0 2 1227 27 0 0 0 chr5 84210855 84210882 -68326377 + AT_rich Low_complexity Low_complexity 1 27 0 2 1227 510 46 0 0 chr5 84212082 84212147 -68325112 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1227 221 0 0 33 chr5 84212207 84212237 -68325022 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1227 858 28 9 0 chr5 84212240 84212349 -68324910 - B1_Mus2 SINE Alu 0 147 38 3 1227 35343 36 0 0 chr5 84212548 84218212 -68319047 + L1Md_T LINE L1 1 5589 -297 3 1227 8947 7 0 0 chr5 84218212 84219208 -68318051 + L1Md_T LINE L1 5590 6585 0 3 1227 24 32 0 0 chr5 84219224 84219255 -68318004 + AT_rich Low_complexity Low_complexity 1 31 0 3 1227 58 96 0 0 chr5 84222076 84222253 -68315006 + AT_rich Low_complexity Low_complexity 1 177 0 3 1227 22 35 0 0 chr5 84222400 84222429 -68314830 + AT_rich Low_complexity Low_complexity 1 29 0 3 1227 12192 28 1 0 chr5 84222485 84223931 -68313328 + L1Md_T LINE L1 4139 5586 -297 3 1227 8433 32 0 0 chr5 84223931 84224927 -68312332 + L1Md_T LINE L1 5587 6582 0 3 1227 441 0 0 0 chr5 84224980 84225029 -68312230 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1227 668 319 55 33 chr5 84225486 84225758 -68311501 + MER2 DNA MER2_type 67 344 -1 3 1227 6549 102 50 2 chr5 84226008 84227280 -68309979 - L1_Mus4 LINE L1 -2 6634 5304 3 1227 22 0 0 0 chr5 84227396 84227418 -68309841 + AT_rich Low_complexity Low_complexity 1 22 0 3 1227 1144 88 0 0 chr5 84227425 84227572 -68309687 + B1_Mus1 SINE Alu 1 147 -1 3 1227 3298 188 68 18 chr5 84227593 84228274 -68308985 + RMER6D LTR ERVK 6 720 0 3 1227 884 132 40 0 chr5 84229906 84230058 -68307201 + L1_Mus2 LINE L1 6409 6566 0 3 1227 411 68 0 0 chr5 84230193 84230252 -68307007 + (A)n Simple_repeat Simple_repeat 1 59 0 3 1227 258 56 0 0 chr5 84230823 84230859 -68306400 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1227 200 91 16 127 chr5 84231240 84231303 -68305956 + A-rich Low_complexity Low_complexity 1 56 0 3 1227 21 36 0 0 chr5 84232862 84232890 -68304369 + AT_rich Low_complexity Low_complexity 1 28 0 3 1227 387 60 0 0 chr5 84232994 84233044 -68304215 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1227 222 376 10 0 chr5 84233131 84233232 -68304027 + MIRb SINE MIR 86 187 -81 3 1227 201 39 0 0 chr5 84233873 84233899 -68303360 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1227 216 86 0 0 chr5 84233923 84233958 -68303301 + (T)n Simple_repeat Simple_repeat 1 35 0 3 1227 304 307 132 4 chr5 84234085 84234370 -68302889 - L1MC2 LINE L1 -299 6045 5728 3 1227 312 278 38 19 chr5 84234586 84234744 -68302515 - L1MC2 LINE L1 -893 5440 5280 3 1227 202 95 48 0 chr5 84234836 84234878 -68302381 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 3 1227 646 107 9 9 chr5 84234872 84234930 -68302329 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 3 1227 1277 78 6 0 chr5 84234930 84235109 -68302150 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1227 646 107 9 9 chr5 84235109 84235163 -68302096 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 3 1227 497 44 15 0 chr5 84235164 84235232 -68302027 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 3 1227 368 176 94 0 chr5 84235287 84235372 -68301887 - Lx9 LINE L1 -32 7612 7520 3 1227 441 36 0 0 chr5 84235376 84235431 -68301828 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1227 520 227 109 0 chr5 84235463 84235591 -68301668 - Lx9 LINE L1 -222 7422 7281 3 1227 394 18 36 0 chr5 84235748 84235803 -68301456 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 3 1227 544 264 0 41 chr5 84235804 84235950 -68301309 - B1_Mur2 SINE Alu -9 140 1 3 1227 1917 212 16 25 chr5 84236179 84236614 -68300645 - BGLII_B LTR ERVK -10 431 1 3 1227 441 0 0 0 chr5 84237705 84237754 -68299505 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 3 1227 234 174 0 0 chr5 84237797 84237843 -68299416 + (TGG)n Simple_repeat Simple_repeat 1 46 0 3 1227 326 80 0 20 chr5 84237939 84237990 -68299269 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 3 1227 21 0 0 0 chr5 84238194 84238215 -68299044 + AT_rich Low_complexity Low_complexity 1 21 0 3 1227 269 310 34 78 chr5 84239547 84239750 -68297509 - MTEa LTR MaLR 0 379 179 3 1227 6106 131 69 6 chr5 84239915 84240945 -68296314 + Lx2A1 LINE L1 5914 7008 0 3 1227 1161 113 0 0 chr5 84240983 84241160 -68296099 + (GAA)n Simple_repeat Simple_repeat 2 178 0 3 1227 757 80 0 0 chr5 84241423 84241536 -68295723 - L1Md_F2 LINE L1 -12 6570 6458 3 1227 24 0 0 0 chr5 84241749 84241773 -68295486 + AT_rich Low_complexity Low_complexity 1 24 0 3 1227 352 188 21 10 chr5 84241778 84241875 -68295384 + Lx9 LINE L1 7545 7642 -2 3 1227 7379 62 2 1 chr5 84244890 84245831 -68291428 - L1Md_F2 LINE L1 -3 5880 4939 3 1227 5431 76 0 8 chr5 84245831 84246550 -68290709 + L1Md_F2 LINE L1 5856 6568 -14 3 1227 432 0 0 0 chr5 84246637 84246685 -68290574 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 3 1227 1867 121 30 0 chr5 84246687 84246984 -68290275 - Lx3A LINE L1 -14 6967 6662 3 1227 608 87 0 0 chr5 84246984 84247076 -68290183 - L1_Mur1 LINE L1 -1837 4049 3958 3 1227 500 296 117 22 chr5 84247472 84247932 -68289327 + L1MC4a LINE L1 7376 7879 -3 3 1227 6142 145 21 13 chr5 84247974 84249023 -68288236 - Lx2 LINE L1 0 6997 5941 3 1227 407 281 3 0 chr5 84250926 84251021 -68286238 + PB1D10 SINE Alu 2 100 -50 3 1227 23 68 0 0 chr5 84251311 84251355 -68285904 + AT_rich Low_complexity Low_complexity 1 44 0 3 1227 481 209 35 35 chr5 84251423 84251537 -68285722 - B3A SINE B2 -84 114 1 3 1227 495 0 0 0 chr5 84251550 84251605 -68285654 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1227 531 157 14 43 chr5 84251605 84251736 -68285523 + Lx2B LINE L1 6856 6985 -15 3 1227 1328 283 41 20 chr5 84251774 84252167 -68285092 + Lx6 LINE L1 7013 7413 -47 3 1227 207 0 0 0 chr5 84252177 84252200 -68285059 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1227 331 244 55 11 chr5 84252827 84252918 -68284341 + HAL1-3A_ME LINE L1 1976 2070 -788 3 1227 360 0 0 0 chr5 84253224 84253264 -68283995 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1227 275 289 31 171 chr5 84254675 84255018 -68282241 - MTEa LTR MaLR -30 349 64 3 1227 505 286 61 69 chr5 84255036 84255382 -68281877 + RLTR15 LTR ERVK 1 343 -16 3 1227 235 231 0 55 chr5 84255400 84255455 -68281804 - MLT2B2 LTR ERVL -463 52 1 3 1227 345 353 62 77 chr5 84256023 84256376 -68280883 - MLT1D LTR MaLR -25 480 133 3 1227 8431 30 1 1 chr5 84256431 84257605 -68279654 - L1Md_T LINE L1 -1 6581 5408 3 1227 8284 20 0 0 chr5 84257592 84258556 -68278703 + L1Md_T LINE L1 4458 5421 -462 3 1227 315 339 27 0 chr5 84258668 84258780 -68278479 - B4A SINE B4 -174 118 4 3 1227 1605 333 84 11 chr5 84258996 84259108 -68278151 + Lx8 LINE L1 6040 6173 -1300 3 1227 534 129 0 0 chr5 84259108 84259193 -68278066 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 1227 1605 333 84 11 chr5 84259193 84259873 -68277386 + Lx8 LINE L1 6174 6890 -583 3 1227 419 326 46 36 chr5 84259925 84260119 -68277140 + Lx8 LINE L1 6963 7158 -315 3 1227 450 53 0 0 chr5 84260822 84260879 -68276380 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1227 819 289 86 16 chr5 84262365 84262678 -68274581 + Lx9 LINE L1 6845 7179 -465 3 1227 4575 233 29 26 chr5 84262680 84263732 -68273527 + Lx5 LINE L1 5992 7046 -4 3 1227 407 293 0 39 chr5 84264005 84264133 -68273126 - MER97c DNA MER1_type? 0 1090 968 3 1227 1306 90 21 5 chr5 84265788 84265978 -68271281 + B2_Mm2 SINE B2 1 193 -2 3 1227 775 328 24 15 chr5 84266030 84266358 -68270901 - Lx8 LINE L1 -56 7417 7087 3 1227 810 264 100 8 chr5 84266472 84266732 -68270527 + Lx7 LINE L1 5589 5872 -1824 3 1227 885 210 92 14 chr5 84266741 84266958 -68270301 + Lx7 LINE L1 6653 6886 -810 3 1227 710 295 117 27 chr5 84266989 84267289 -68269970 - ORR1D2 LTR MaLR 0 370 44 3 1227 1023 319 71 22 chr5 84267343 84267882 -68269377 + Lx8 LINE L1 6061 6658 -815 3 1227 313 301 52 52 chr5 84267949 84268103 -68269156 + Lx8 LINE L1 6801 6954 -519 3 1227 1093 63 7 0 chr5 84268197 84268340 -68268919 + B1_Mus1 SINE Alu 5 148 0 3 1227 183 100 0 0 chr5 84268340 84268370 -68268889 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3 1227 424 359 23 23 chr5 84268383 84268597 -68268662 + B3 SINE B2 3 216 0 3 1227 714 96 226 0 chr5 84268607 84268722 -68268537 + B1_Mus1 SINE Alu 1 141 -7 3 1227 321 36 0 52 chr5 84268723 84268781 -68268478 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 3 1227 440 300 47 79 chr5 84269137 84269455 -68267804 - L1MA4 LINE L1 -287 6013 5706 3 1227 379 279 66 48 chr5 84269458 84269638 -68267621 + BGLII_B LTR ERVK 5 178 -350 3 1227 331 172 34 22 chr5 84269641 84269730 -68267529 + A-rich Low_complexity Low_complexity 3 92 0 3 1227 1277 73 0 6 chr5 84269730 84269909 -68267350 + (GGGGA)n Simple_repeat Simple_repeat 1 178 0 3 1227 684 0 0 0 chr5 84269911 84269987 -68267272 + (GGGAA)n Simple_repeat Simple_repeat 1 76 0 3 1227 1744 144 6 86 chr5 84270035 84270385 -68266874 + RLTR23 LTR ERV1 107 428 -2 3 1227 499 264 66 53 chr5 84270405 84270651 -68266608 + BGLII_B LTR ERVK 169 414 -27 3 1227 403 354 94 37 chr5 84270729 84271081 -68266178 - L1M4 LINE L1 -514 5660 5289 3 1227 322 255 112 19 chr5 84271064 84271224 -68266035 - L1MA4 LINE L1 -835 5308 5134 3 1227 927 226 148 109 chr5 84272327 84272739 -68264520 - RMER6B LTR ERVK -33 428 1 3 1227 24 0 0 0 chr5 84272920 84272944 -68264315 + AT_rich Low_complexity Low_complexity 1 24 0 3 1227 261 206 0 0 chr5 84273094 84273186 -68264073 + A-rich Low_complexity Low_complexity 1 92 0 3 1227 295 355 83 79 chr5 84273731 84274139 -68263120 - MLT1H-int LTR MaLR -442 1047 564 3 1227 922 148 196 0 chr5 84274186 84274375 -68262884 - URR1A DNA MER1_type 0 226 1 3 1227 1283 284 88 42 chr5 84275683 84275958 -68261301 - Lx9 LINE L1 -939 6705 6440 3 1227 567 0 0 0 chr5 84275958 84276021 -68261238 + (GGGAA)n Simple_repeat Simple_repeat 4 66 0 3 1227 1919 258 50 40 chr5 84276021 84277057 -68260202 - Lx9 LINE L1 -1205 6439 5230 3 1227 380 341 18 18 chr5 84277570 84277797 -68259462 - L1ME3A LINE L1 -72 6101 5875 3 1227 711 72 0 26 chr5 84277965 84278079 -68259180 + (TA)n Simple_repeat Simple_repeat 1 111 0 3 1227 23 33 0 0 chr5 84278993 84279023 -68258236 + AT_rich Low_complexity Low_complexity 1 30 0 3 1228 1898 347 44 21 chr5 84279337 84280367 -68256892 - Lx8 LINE L1 -51 7422 6370 3 1228 2819 290 102 77 chr5 84280443 84280672 -68256587 - RMER1C Other Other 0 1342 1006 3 1228 927 16 32 0 chr5 84280672 84280796 -68256463 + (TTTTA)n Simple_repeat Simple_repeat 3 130 0 3 1228 2819 290 102 77 chr5 84280796 84281567 -68255692 - RMER1C Other Other -337 1005 286 3 1228 668 35 11 0 chr5 84281567 84281654 -68255605 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 3 1228 2819 290 102 77 chr5 84281654 84281933 -68255326 - RMER1C Other Other -1057 285 32 3 1228 277 323 44 12 chr5 84282366 84282526 -68254733 - L1MEg2 LINE L1 -6286 166 2 4 1228 310 311 81 48 chr5 84283067 84283253 -68254006 + ORR1E LTR MaLR 5 196 -163 4 1228 189 211 0 0 chr5 84283790 84283847 -68253412 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1228 24 32 0 0 chr5 84284407 84284438 -68252821 + AT_rich Low_complexity Low_complexity 1 31 0 4 1228 500 81 14 0 chr5 84285713 84285787 -68251472 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1228 22 0 0 0 chr5 84285953 84285975 -68251284 + AT_rich Low_complexity Low_complexity 1 22 0 4 1228 2500 231 83 30 chr5 84286483 84287056 -68250203 - Lx9 LINE L1 -63 7581 6967 4 1228 3809 105 18 7 chr5 84287056 84287615 -68249644 - Lx LINE L1 -7 6647 6083 4 1228 2500 231 83 30 chr5 84287615 84287763 -68249496 - Lx9 LINE L1 -678 6966 6822 4 1228 303 319 22 0 chr5 84287764 84287855 -68249404 - B3 SINE B2 -11 205 113 4 1228 1080 277 54 124 chr5 84287889 84288446 -68248813 - RLTR20B3 LTR ERVK -47 530 13 4 1228 313 340 58 0 chr5 84288444 84288547 -68248712 - B3A SINE B2 -79 119 11 4 1228 27 0 0 0 chr5 84288730 84288757 -68248502 + AT_rich Low_complexity Low_complexity 1 27 0 4 1228 276 244 206 22 chr5 84289239 84289331 -68247928 - PB1D7 SINE Alu -1 119 11 4 1228 439 332 44 22 chr5 84289653 84289971 -68247288 - L1ME1 LINE L1 -171 6008 5683 4 1228 225 0 0 0 chr5 84289971 84289996 -68247263 + (TTG)n Simple_repeat Simple_repeat 2 26 0 4 1228 439 332 44 22 chr5 84289996 84290089 -68247170 - L1ME1 LINE L1 -497 5682 5589 4 1228 1352 122 0 5 chr5 84290097 84290303 -68246956 + ORR1A3 LTR MaLR 122 326 0 4 1228 9519 153 66 27 chr5 84290303 84292188 -68245071 + ORR1A3-int LTR MaLR 1 1959 -4 4 1228 567 85 0 0 chr5 84292849 84292931 -68244328 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1228 1665 80 13 0 chr5 84292932 84293158 -68244101 + ORR1A3 LTR MaLR 43 271 -55 4 1228 998 103 0 0 chr5 84294255 84294391 -68242868 + B1_Mus1 SINE Alu 3 138 -10 4 1228 805 99 7 14 chr5 84294391 84294535 -68242724 + (GAAAA)n Simple_repeat Simple_repeat 2 144 0 4 1228 492 18 0 0 chr5 84294567 84294624 -68242635 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1228 510 17 0 0 chr5 84294625 84294684 -68242575 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1228 470 83 14 0 chr5 84294684 84294755 -68242504 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1228 2453 193 142 7 chr5 84294845 84295450 -68241809 + RMER6C LTR ERVK 3 689 -1 4 1228 401 370 75 16 chr5 84295450 84295637 -68241622 - B4A SINE B4 -85 207 10 4 1228 302 0 26 0 chr5 84295651 84295689 -68241570 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 4 1228 781 264 62 42 chr5 84295797 84296038 -68241221 + ORR1E LTR MaLR 4 249 -110 4 1228 24 0 0 0 chr5 84298080 84298104 -68239155 + AT_rich Low_complexity Low_complexity 1 24 0 4 1228 1857 189 19 39 chr5 84298325 84298689 -68238570 + Lx4A LINE L1 6701 7057 -1 4 1228 29 0 0 0 chr5 84298689 84298718 -68238541 + AT_rich Low_complexity Low_complexity 1 29 0 4 1228 1299 309 94 24 chr5 84298857 84299567 -68237692 - Lx8 LINE L1 -525 6948 6189 4 1228 216 0 0 0 chr5 84300433 84300457 -68236802 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1228 28 48 0 0 chr5 84301739 84301781 -68235478 + AT_rich Low_complexity Low_complexity 1 42 0 4 1228 218 81 27 0 chr5 84303749 84303786 -68233473 + (CCCCCT)n Simple_repeat Simple_repeat 1 38 0 4 1228 456 19 0 0 chr5 84303799 84303852 -68233407 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1228 1112 194 69 24 chr5 84304094 84304384 -68232875 - Lx9 LINE L1 -419 7225 6923 4 1228 268 250 71 48 chr5 84304381 84304465 -68232794 + Lx9 LINE L1 7264 7349 -295 4 1228 210 71 0 0 chr5 84304674 84304702 -68232557 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 4 1228 574 259 0 36 chr5 84304702 84304842 -68232417 - B1_Mus1 SINE Alu -13 135 1 4 1228 7474 189 16 14 chr5 84305371 84307289 -68229970 - Lx5 LINE L1 -4 7046 5121 4 1228 853 317 9 45 chr5 84307303 84307637 -68229622 - MurERV4-int LTR ERVK -396 4864 4543 4 1228 1028 153 5 50 chr5 84308522 84308722 -68228537 + B2_Mm2 SINE B2 4 194 -1 4 1228 1008 224 47 47 chr5 84308845 84309187 -68228072 - RLTR15 LTR ERVK -17 342 1 4 1228 1159 171 5 5 chr5 84309187 84309399 -68227860 - Lx5 LINE L1 -776 5101 4890 4 1228 10578 180 31 63 chr5 84309396 84310995 -68226264 - Lx5 LINE L1 -2163 3714 2146 4 1228 1185 61 0 0 chr5 84310995 84311142 -68226117 - B1_Mm SINE Alu 0 147 1 4 1228 10578 180 31 63 chr5 84311142 84311544 -68225715 - Lx5 LINE L1 -3732 2145 1774 4 1228 1137 50 14 0 chr5 84311544 84311683 -68225576 + B1_Mm SINE Alu 1 141 -6 4 1228 10578 184 30 58 chr5 84311683 84312340 -68224919 - Lx5 LINE L1 -4104 1773 1139 4 1228 2685 45 3 0 chr5 84312411 84312742 -68224517 + IAPEY3_LTR LTR ERVK 1 332 0 4 1228 280 248 131 8 chr5 84312743 84312865 -68224394 - Lx5 LINE L1 -6054 1032 896 4 1228 749 247 7 0 chr5 84313220 84313366 -68223893 + B1_Mur4 SINE Alu 3 149 -1 4 1228 297 0 0 0 chr5 84313389 84313422 -68223837 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1228 369 0 0 0 chr5 84313422 84313462 -68223797 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1228 504 0 0 0 chr5 84313571 84313627 -68223632 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1228 217 75 24 24 chr5 84313756 84313797 -68223462 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 4 1228 842 89 16 0 chr5 84314667 84314790 -68222469 - B1_Mus1 SINE Alu -8 140 16 4 1228 411 383 36 94 chr5 84314807 84315167 -68222092 - ORR1E LTR MaLR 0 359 21 4 1228 387 0 0 0 chr5 84316340 84316383 -68220876 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1228 1588 155 18 0 chr5 84316459 84316736 -68220523 - RMER6C LTR ERVK 0 690 409 4 1228 2873 241 37 33 chr5 84316869 84317675 -68219584 - RMER1B Other Other -2 1064 8 4 1228 5984 79 2 12 chr5 84317675 84318491 -68218768 + RLTR13C2 LTR ERVK 1 808 0 4 1228 387 0 0 0 chr5 84318732 84318775 -68218484 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1228 1114 298 6 43 chr5 84318880 84319206 -68218053 - RMER1B Other Other -715 351 38 4 1228 264 258 22 0 chr5 84321527 84321616 -68215643 + L1_Rod LINE L1 1482 1572 -4275 4 1228 1070 131 87 23 chr5 84321607 84321668 -68215591 - L1_Mur1 LINE L1 -1003 4883 4816 4 1228 432 0 0 0 chr5 84321668 84321716 -68215543 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1228 1070 131 87 23 chr5 84321716 84321872 -68215387 - L1_Mur1 LINE L1 -1071 4815 4653 4 1228 6605 243 56 12 chr5 84321871 84324049 -68213210 + Lx6 LINE L1 5169 7455 -5 4 1228 681 276 50 25 chr5 84324468 84324828 -68212431 + L1M2 LINE L1 2491 2859 -3284 4 1228 388 202 167 0 chr5 84324855 84324969 -68212290 + Lx7 LINE L1 5697 5829 -1867 4 1228 613 263 88 31 chr5 84325006 84325198 -68212061 - B3A SINE B2 -13 203 1 4 1228 22 0 0 0 chr5 84325346 84325368 -68211891 + AT_rich Low_complexity Low_complexity 1 22 0 4 1228 274 23 23 23 chr5 84325434 84325478 -68211781 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1228 491 305 6 12 chr5 84326627 84326793 -68210466 - RSINE1 SINE B4 0 165 1 4 1228 1391 190 17 64 chr5 84327821 84328119 -68209140 + RLTR20A LTR ERVK 258 541 0 4 1228 937 274 55 142 chr5 84328294 84328753 -68208506 - RLTR23 LTR ERV1 -4 426 8 4 1228 1173 176 59 62 chr5 84328767 84329040 -68208219 - Lx6 LINE L1 -627 6833 6562 4 1228 1667 290 92 21 chr5 84329044 84329312 -68207947 + Lx6 LINE L1 6832 7105 -355 4 1228 350 57 19 0 chr5 84329312 84329365 -68207894 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1228 1667 290 92 21 chr5 84329365 84329674 -68207585 + Lx6 LINE L1 7106 7449 -11 4 1228 196 301 92 51 chr5 84333130 84333228 -68204031 - MIRb SINE MIR -29 239 138 4 1228 32 0 0 0 chr5 84333304 84333336 -68203923 + AT_rich Low_complexity Low_complexity 1 32 0 4 1228 206 354 0 0 chr5 84333604 84333669 -68203590 + C-rich Low_complexity Low_complexity 2 66 0 4 1228 300 122 0 39 chr5 84334386 84334437 -68202822 + B1_Mm SINE Alu 89 137 -10 4 1228 2293 178 2 12 chr5 84335646 84336047 -68201212 + ORR1B1 LTR MaLR 1 387 -7 4 1228 189 0 0 0 chr5 84336828 84336849 -68200410 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1228 468 351 0 0 chr5 84337302 84337433 -68199826 - RSINE1 SINE B4 -29 136 6 4 1228 313 386 69 41 chr5 84338144 84338609 -68198650 - L2 LINE L2 -437 2982 2505 4 1228 23 0 0 0 chr5 84338652 84338675 -68198584 + AT_rich Low_complexity Low_complexity 1 23 0 4 1228 890 68 90 0 chr5 84338873 84339006 -68198253 - RLTR23 LTR ERV1 -1 429 285 4 1228 549 154 170 27 chr5 84339001 84339148 -68198111 - RLTR23 LTR ERV1 -262 168 1 4 1228 2210 196 8 45 chr5 84339296 84339782 -68197477 + RLTR18-int LTR ERVK 4890 5357 -4 4 1228 459 340 65 116 chr5 84339799 84340394 -68196865 + RLTR18 LTR ERVK 25 589 -27 4 1228 1300 189 71 4 chr5 84340427 84340682 -68196577 + ORR1C1 LTR MaLR 105 376 -2 4 1228 1308 182 19 0 chr5 84341603 84341861 -68195398 + RMER10B LTR ERVL 1 263 -135 4 1228 828 230 32 68 chr5 84341878 84342097 -68195162 + RMER10B LTR ERVL 188 398 0 4 1228 513 84 0 0 chr5 84342712 84342783 -68194476 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 1228 1048 286 46 41 chr5 84344159 84344527 -68192732 + ORR1D2 LTR MaLR 1 370 0 4 1228 883 42 17 0 chr5 84344781 84344901 -68192358 + (GA)n Simple_repeat Simple_repeat 1 122 0 4 1228 315 0 0 0 chr5 84346192 84346227 -68191032 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1228 26 30 0 0 chr5 84346227 84346260 -68190999 + AT_rich Low_complexity Low_complexity 1 33 0 4 1228 27 0 0 0 chr5 84346273 84346300 -68190959 + AT_rich Low_complexity Low_complexity 1 27 0 4 1228 459 310 64 30 chr5 84346463 84346729 -68190530 - Lx8 LINE L1 -1 7472 7198 4 1228 265 98 59 0 chr5 84346728 84346779 -68190480 - L1Md_A LINE L1 -417 6165 6112 4 1228 1916 84 36 7 chr5 84346781 84347058 -68190201 + L1Md_F2 LINE L1 6284 6568 -14 4 1228 220 229 0 0 chr5 84347614 84347662 -68189597 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1228 327 113 0 0 chr5 84347885 84347938 -68189321 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1228 653 319 14 5 chr5 84348891 84349105 -68188154 + B3 SINE B2 1 216 0 4 1228 730 244 28 6 chr5 84349129 84349310 -68187949 + ORR1D1-int LTR MaLR 1181 1365 -5 4 1228 489 265 0 8 chr5 84349314 84349432 -68187827 + ORR1D1 LTR MaLR 3 119 -255 4 1228 274 235 36 24 chr5 84349419 84349502 -68187757 + ORR1D1 LTR MaLR 299 382 -2 4 1228 249 57 0 0 chr5 84349560 84349595 -68187664 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1228 6688 234 70 41 chr5 84349628 84351487 -68185772 - Lx6 LINE L1 -2 7458 5518 4 1228 3530 203 12 77 chr5 84351486 84352435 -68184824 - Lx6 LINE L1 -1228 4652 3766 4 1228 333 0 0 0 chr5 84352493 84352530 -68184729 + (TTA)n Simple_repeat Simple_repeat 1 37 0 5 1228 3973 125 77 3 chr5 84352530 84353310 -68183949 - Lx3B LINE L1 -14 6967 6022 5 1228 2996 222 79 16 chr5 84353315 84353366 -68183893 - Lx6 LINE L1 -3773 2107 2058 4 1228 270 0 0 0 chr5 84353366 84353396 -68183863 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1228 2996 269 82 60 chr5 84353396 84355085 -68182174 - Lx6 LINE L1 -3823 2057 341 4 1228 255 365 13 105 chr5 84355129 84355282 -68181977 - MTEb LTR MaLR -118 261 123 5 1228 1025 321 78 0 chr5 84355354 84355740 -68181519 + Lx8 LINE L1 6231 6646 -827 5 1228 462 18 0 0 chr5 84356569 84356624 -68180635 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1228 397 333 24 0 chr5 84356830 84356953 -68180306 + RMER15 LTR ERVL 436 561 -14 5 1228 505 314 171 43 chr5 84358056 84358408 -68178851 - LTR40a LTR ERVL -37 482 86 5 1228 323 96 19 0 chr5 84358592 84358644 -68178615 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1228 504 45 0 0 chr5 84358644 84358711 -68178548 + (GA)n Simple_repeat Simple_repeat 2 68 0 5 1228 356 337 93 64 chr5 84360191 84360720 -68176539 + L1M2a LINE L1 1619 2162 -5006 5 1228 1002 228 4 38 chr5 84360727 84360991 -68176268 - Lx2B LINE L1 -144 6856 6602 5 1228 226 239 56 14 chr5 84360983 84361055 -68176204 + Lx4B LINE L1 6943 7017 -41 5 1228 50 0 0 0 chr5 84361055 84361105 -68176154 + AT_rich Low_complexity Low_complexity 1 50 0 5 1228 398 294 14 29 chr5 84361128 84361268 -68175991 + B1F1 SINE Alu 6 143 -6 5 1228 314 45 23 0 chr5 84361269 84361313 -68175946 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 5 1228 269 173 0 37 chr5 84361798 84361852 -68175407 + B2_Mm2 SINE B2 5 56 -139 5 1228 818 213 22 12 chr5 84361945 84362132 -68175127 - ORR1B1 LTR MaLR -220 174 1 5 1228 579 310 53 23 chr5 84362239 84362543 -68174716 + L1M2 LINE L1 5257 5569 -722 5 1228 503 266 137 0 chr5 84362784 84362923 -68174336 + MT2A LTR ERVL 376 533 0 5 1228 2579 171 112 25 chr5 84363703 84364338 -68172921 - RMER6C LTR ERVK 0 690 1 5 1228 792 319 149 3 chr5 84364628 84364949 -68172310 + ORR1D2 LTR MaLR 1 368 -2 5 1228 211 328 22 30 chr5 84365202 84365337 -68171922 - L2 LINE L2 -1293 2126 1993 5 1228 280 274 0 27 chr5 84366936 84367011 -68170248 + B3A SINE B2 2 74 -124 5 1228 706 313 134 0 chr5 84367279 84367525 -68169734 - B4A SINE B4 -6 286 8 5 1228 21 0 0 0 chr5 84367543 84367564 -68169695 + AT_rich Low_complexity Low_complexity 1 21 0 5 1228 6773 98 21 18 chr5 84367594 84368920 -68168339 - L1_Mus2 LINE L1 0 6566 5237 5 1228 10468 136 18 1 chr5 84368927 84369893 -68167366 - L1_Mus2 LINE L1 -1411 4472 3488 5 1228 252 0 0 0 chr5 84369893 84369921 -68167338 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 1228 10468 136 18 1 chr5 84369921 84370682 -68166577 - L1_Mus2 LINE L1 -2396 3487 2716 5 1228 259 352 74 0 chr5 84370951 84371073 -68166186 + MIR SINE MIR 43 173 -89 5 1228 1298 229 105 12 chr5 84372891 84373214 -68164045 + ORR1D1 LTR MaLR 3 355 -19 5 1228 1019 354 22 26 chr5 84373242 84373822 -68163437 + Lx8 LINE L1 6112 6689 -784 5 1228 1177 315 65 21 chr5 84373842 84374276 -68162983 + Lx8 LINE L1 6837 7289 -184 5 1228 1174 351 54 28 chr5 84374445 84375224 -68162035 + Lx8 LINE L1 6482 7280 -193 5 1228 3095 117 2 0 chr5 84376505 84376965 -68160294 - L1_Mm LINE L1 -357 5526 5066 5 1228 7208 68 31 16 chr5 84376958 84377976 -68159283 - L1Md_F2 LINE L1 0 6582 5550 5 1228 403 113 0 0 chr5 84377975 84378037 -68159222 - L1Md_F2 LINE L1 -800 5083 5022 5 1228 332 61 102 0 chr5 84378035 84378084 -68159175 + L1_Mm LINE L1 5521 5574 -309 5 1228 1402 115 0 0 chr5 84378086 84378294 -68158965 + L1_Mus1 LINE L1 6359 6566 -1 5 1228 22 0 0 0 chr5 84378637 84378659 -68158600 + AT_rich Low_complexity Low_complexity 1 22 0 5 1228 612 308 62 15 chr5 84378917 84379282 -68157977 + Lx8 LINE L1 5490 5902 -410 5 1228 779 164 167 47 chr5 84380104 84380296 -68156963 + Lx7 LINE L1 5587 5801 -1895 5 1228 5259 236 50 35 chr5 84380302 84380832 -68156427 + Lx7 LINE L1 6281 6793 -903 5 1228 3334 78 36 4 chr5 84380832 84381308 -68155951 - L1_Mus2 LINE L1 -2 6564 6074 5 1228 5259 236 50 35 chr5 84381308 84382172 -68155087 + Lx7 LINE L1 6794 7695 -1 5 1228 23 68 0 0 chr5 84382406 84382450 -68154809 + AT_rich Low_complexity Low_complexity 1 44 0 5 1228 1022 332 47 23 chr5 84382649 84383161 -68154098 + Lx8 LINE L1 6168 6691 -782 5 1228 7945 46 2 4 chr5 84383194 84384182 -68153077 - L1Md_F2 LINE L1 0 6582 5597 5 1228 857 320 53 6 chr5 84384200 84384539 -68152720 + Lx8 LINE L1 6704 7058 -415 5 1228 315 0 0 0 chr5 84384696 84384731 -68152528 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 5 1228 21 0 0 0 chr5 84385335 84385356 -68151903 + AT_rich Low_complexity Low_complexity 1 21 0 5 1228 536 359 19 46 chr5 84385612 84385872 -68151387 + B4 SINE B4 28 280 -12 5 1228 267 93 0 0 chr5 84386082 84386125 -68151134 + (CATA)n Simple_repeat Simple_repeat 1 43 0 5 1228 461 313 55 9 chr5 84386303 84386522 -68150737 - L1M2 LINE L1 -504 5796 5568 5 1228 342 0 0 0 chr5 84386991 84387029 -68150230 + (TA)n Simple_repeat Simple_repeat 2 39 0 5 1228 24 32 0 0 chr5 84387658 84387689 -68149570 + AT_rich Low_complexity Low_complexity 1 31 0 5 1228 2387 161 24 2 chr5 84387825 84388248 -68149011 + Lx2B LINE L1 6568 6999 -1 5 1228 287 120 11 57 chr5 84388313 84388401 -68148858 + T-rich Low_complexity Low_complexity 2 85 0 5 1228 181 83 27 27 chr5 84388444 84388481 -68148778 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 5 1228 2332 96 3 88 chr5 84388693 84389080 -68148179 - RLTR10D LTR ERVK -5 354 1 5 1228 252 338 68 18 chr5 84389087 84389250 -68148009 + RMER15 LTR ERVL 389 559 -16 5 1228 1302 73 0 6 chr5 84389471 84389650 -68147609 + L1_Mus1 LINE L1 6390 6567 0 5 1228 1512 225 20 26 chr5 84390053 84390396 -68146863 - ORR1C2 LTR MaLR -43 341 1 5 1228 551 238 60 35 chr5 84390399 84390599 -68146660 + RMER15-int LTR ERVL 584 788 -4211 5 1228 340 297 29 19 chr5 84390922 84391025 -68146234 + RMER15 LTR ERVL 355 458 -117 5 1228 1060 109 0 0 chr5 84391231 84391378 -68145881 + B1_Mm SINE Alu 1 147 0 5 1228 622 297 7 7 chr5 84391506 84391645 -68145614 - RSINE1 SINE B4 -16 149 11 5 1228 3809 108 61 10 chr5 84391645 84392251 -68145008 + L1_Mm LINE L1 4074 4710 -1173 5 1228 33473 75 0 54 chr5 84392243 84397006 -68140253 + L1_Mus3 LINE L1 832 5586 -297 5 1228 8991 2 0 1 chr5 84397006 84398003 -68139256 + L1Md_A LINE L1 5587 6582 0 5 1228 33473 70 0 58 chr5 84398003 84398178 -68139081 + L1_Mus3 LINE L1 5587 5587 -296 5 1228 1851 152 42 76 chr5 84398178 84398584 -68138675 + RLTR9C LTR ERVK 2 393 0 5 1228 33473 94 2 26 chr5 84398584 84399598 -68137661 + L1_Mus3 LINE L1 5587 6496 -142 5 1228 328 125 0 0 chr5 84399614 84399662 -68137597 - HAL1-3A_ME LINE L1 -836 2022 1975 5 1228 784 190 11 7 chr5 84399677 84399958 -68137301 + (TATG)n Simple_repeat Simple_repeat 1 282 0 5 1228 334 91 0 0 chr5 84399963 84400007 -68137252 - HAL1-3A_ME LINE L1 -846 2012 1969 5 1228 2919 174 45 35 chr5 84401294 84401870 -68135389 - RMER4B LTR ERVK 0 585 4 5 1228 474 266 47 120 chr5 84402092 84402233 -68135026 - B3A SINE B2 -49 167 25 5 1228 3209 76 0 5 chr5 84402233 84402657 -68134602 - L1_Mus1 LINE L1 0 6567 6146 5 1228 474 261 44 138 chr5 84402657 84402698 -68134561 - B3A SINE B2 -170 28 2 5 1228 523 213 39 0 chr5 84402858 84402985 -68134274 + Lx3B LINE L1 6841 6972 -1 5 1228 272 27 0 26 chr5 84402991 84403029 -68134230 + (TAA)n Simple_repeat Simple_repeat 3 39 0 5 1228 739 329 48 15 chr5 84403054 84403384 -68133875 + LTR83 LTR ERVL 58 398 -382 5 1228 3513 175 29 0 chr5 84403629 84404287 -68132972 + Lx LINE L1 4434 5110 -773 5 1228 4590 116 29 16 chr5 84404283 84404816 -68132443 + Lx LINE L1 5422 5983 -671 5 1228 243 0 0 0 chr5 84404816 84404843 -68132416 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 5 1228 4590 111 13 18 chr5 84404843 84405153 -68132106 + Lx LINE L1 5984 6290 -364 5 1228 1218 196 0 8 chr5 84405145 84405382 -68131877 + Lx LINE L1 6420 6654 0 5 1228 282 277 188 7 chr5 84405571 84405709 -68131550 + L2a LINE L2 3260 3422 -4 5 1228 25 51 0 0 chr5 84406204 84406243 -68131016 + AT_rich Low_complexity Low_complexity 1 39 0 5 1228 550 380 88 12 chr5 84406254 84406685 -68130574 - MLT2B4 LTR ERVL -89 467 4 5 1228 1286 346 50 7 chr5 84407948 84408486 -68128773 - LTR69 LTR ERVL -27 561 1 5 1228 504 48 0 0 chr5 84408578 84408641 -68128618 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 153 460 313 72 55 chr5 84410144 84410520 -68126739 + MLT1D LTR MaLR 21 415 -52 5 1229 7776 42 1 1 chr5 84410958 84411903 -68125356 - L1Md_T LINE L1 -2 6580 5636 5 1229 711 132 0 17 chr5 84412110 84412202 -68125057 + L1_Mm LINE L1 4845 4936 -947 5 1229 3634 50 2 7 chr5 84412202 84412663 -68124596 - L1Md_F2 LINE L1 0 6582 6124 5 1229 711 132 0 17 chr5 84412663 84412686 -68124573 + L1_Mm LINE L1 4937 4958 -925 5 1229 665 307 164 16 chr5 84412799 84413110 -68124149 + ORR1E LTR MaLR 1 357 -2 5 1229 582 241 75 7 chr5 84413290 84413436 -68123823 + MTD LTR MaLR 1 156 -263 5 1229 631 245 36 7 chr5 84413442 84413582 -68123677 + MTD LTR MaLR 273 416 -3 5 1229 21 36 0 0 chr5 84413626 84413654 -68123605 + AT_rich Low_complexity Low_complexity 1 28 0 5 1229 2750 79 0 14 chr5 84414330 84414701 -68122558 + L1_Mus4 LINE L1 5988 6353 -283 5 1229 1901 203 28 47 chr5 84414906 84415125 -68122134 - MTC LTR MaLR 0 421 207 5 1229 1249 7 13 0 chr5 84415125 84415275 -68121984 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 5 1229 4092 70 11 18 chr5 84415279 84415828 -68121431 - L1Md_F2 LINE L1 -17 6565 6021 5 1229 1901 203 28 47 chr5 84415828 84416032 -68121227 - MTC LTR MaLR -215 206 1 5 1229 29 84 0 0 chr5 84417112 84417183 -68120076 + AT_rich Low_complexity Low_complexity 1 71 0 5 1229 489 320 62 50 chr5 84417194 84417355 -68119904 - RSINE1 SINE B4 0 165 3 5 1229 35 24 0 0 chr5 84417408 84417450 -68119809 + AT_rich Low_complexity Low_complexity 1 42 0 5 1229 509 176 22 0 chr5 84417642 84417733 -68119526 - RMER6C LTR ERVK -3 687 595 5 1229 1656 179 45 3 chr5 84417794 84418125 -68119134 - RMER6C LTR ERVK -345 345 1 5 1229 3286 212 33 42 chr5 84418126 84419298 -68117961 - MurERV4-int LTR ERVK -106 5154 4312 5 1229 224 297 0 26 chr5 84419325 84419401 -68117858 + CT-rich Low_complexity Low_complexity 2 75 0 5 1229 550 308 32 32 chr5 84421128 84421316 -68115943 + B3 SINE B2 1 188 -28 5 1229 336 316 97 32 chr5 84421389 84421543 -68115716 + RSINE1 SINE B4 2 165 0 5 1229 355 284 47 13 chr5 84421745 84421895 -68115364 - MIR SINE MIR -26 236 82 5 1229 2179 192 20 124 chr5 84421899 84422488 -68114771 - RLTR11A LTR ERVK 0 528 1 5 1229 274 361 61 65 chr5 84423053 84423299 -68113960 - MER44C DNA MER2_type -9 724 480 5 1229 899 297 74 3 chr5 84423308 84423619 -68113640 + Lx3C LINE L1 6641 6973 -3 5 1229 945 342 65 0 chr5 84423665 84424065 -68113194 - MER44C DNA MER2_type -304 429 4 5 1229 799 318 43 126 chr5 84424557 84424875 -68112384 + Lx9 LINE L1 6931 7237 -407 6 1229 654 37 0 0 chr5 84424875 84424956 -68112303 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 6 1229 799 318 43 126 chr5 84424956 84425004 -68112255 + Lx9 LINE L1 7238 7248 -396 6 1229 962 127 6 0 chr5 84425004 84425162 -68112097 + (GAAA)n Simple_repeat Simple_repeat 3 161 0 6 1229 799 318 43 126 chr5 84425162 84425351 -68111908 + Lx9 LINE L1 7249 7441 -203 6 1229 186 71 0 0 chr5 84425356 84425384 -68111875 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 6 1229 877 310 69 39 chr5 84427010 84427399 -68109860 - MTD LTR MaLR -15 404 4 6 1229 23102 171 25 23 chr5 84428177 84430938 -68106321 + Lx LINE L1 370 3175 -2708 6 1229 468 0 0 0 chr5 84430938 84430990 -68106269 + (TTTTG)n Simple_repeat Simple_repeat 5 56 0 6 1229 23102 176 15 25 chr5 84430990 84433188 -68104071 + Lx LINE L1 3176 5326 -557 6 1229 6214 47 1 1 chr5 84433188 84433951 -68103308 + L1_Mus1 LINE L1 5805 6567 0 6 1229 23102 114 9 19 chr5 84433951 84434775 -68102484 + Lx LINE L1 5327 6124 -530 6 1229 1955 148 6 12 chr5 84434772 84435107 -68102152 + Lx LINE L1 6315 6647 -7 6 1229 3086 127 14 10 chr5 84436377 84436864 -68100395 - Lx3B LINE L1 0 6973 6485 6 1229 28 29 0 0 chr5 84437408 84437443 -68099816 + AT_rich Low_complexity Low_complexity 1 35 0 6 1229 707 22 11 0 chr5 84437785 84437874 -68099385 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 6 1229 243 334 0 0 chr5 84437899 84437967 -68099292 - B1F SINE Alu -66 83 16 6 1229 30 89 0 0 chr5 84438114 84438193 -68099066 + AT_rich Low_complexity Low_complexity 1 79 0 6 1229 389 284 87 0 chr5 84438615 84438742 -68098517 - L1M5 LINE L1 -472 5652 5515 6 1229 916 314 77 16 chr5 84439148 84439588 -68097671 - Lx8 LINE L1 -190 7283 6817 6 1229 3316 34 10 5 chr5 84439592 84440001 -68097258 + L1Md_F3 LINE L1 6157 6567 -17 6 1229 22 0 0 0 chr5 84440067 84440089 -68097170 + AT_rich Low_complexity Low_complexity 1 22 0 6 1229 316 326 31 81 chr5 84440295 84440455 -68096804 - B3A SINE B2 -17 181 30 6 1229 539 274 33 28 chr5 84441273 84441453 -68095806 + Lx8 LINE L1 6990 7170 -303 6 1229 1790 151 53 0 chr5 84441571 84441889 -68095370 - Lx3C LINE L1 -275 5602 5268 6 1229 8397 124 33 3 chr5 84441896 84443201 -68094058 + Lx3C LINE L1 5587 6930 -46 6 1229 669 82 0 0 chr5 84443331 84443429 -68093830 - L1_Mus1 LINE L1 -1 6566 6469 6 1229 795 66 0 0 chr5 84443733 84443839 -68093420 + (TG)n Simple_repeat Simple_repeat 1 106 0 6 1229 7180 55 16 0 chr5 84444356 84445251 -68092008 - L1_Mus1 LINE L1 -2 6565 5657 6 1229 476 304 14 0 chr5 84445368 84445506 -68091753 + B1F2 SINE Alu 2 141 -8 6 1229 358 392 40 12 chr5 84446583 84446756 -68090503 + B4A SINE B4 1 178 -114 6 1229 252 0 0 0 chr5 84446918 84446946 -68090313 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1229 200 273 30 0 chr5 84446978 84447044 -68090215 + GA-rich Low_complexity Low_complexity 1 68 0 6 1229 290 211 14 40 chr5 84447048 84447119 -68090140 - RMER19C LTR ERVK 0 902 834 6 1229 3630 102 6 30 chr5 84447119 84447358 -68089901 - RLTR13C1 LTR ERVK 0 1033 690 6 1229 5976 35 1 8 chr5 84447358 84448083 -68089176 + L1Md_F2 LINE L1 5863 6582 0 6 1229 3630 161 66 47 chr5 84448083 84448750 -68088509 - RLTR13C1 LTR ERVK -294 689 1 6 1229 2365 181 44 161 chr5 84448751 84449368 -68087891 - RMER19C LTR ERVK -63 548 4 6 1229 254 303 22 11 chr5 84449368 84449458 -68087801 + (CAGAGA)n Simple_repeat Simple_repeat 3 93 0 6 1229 303 169 0 0 chr5 84449392 84449451 -68087808 + (CTGGGG)n Simple_repeat Simple_repeat 6 64 0 6 1229 685 305 19 5 chr5 84449480 84449694 -68087565 + MLT2D LTR ERVL 8 224 -190 6 1229 2255 334 109 40 chr5 84449920 84451839 -68085420 + ERVL-int LTR ERVL 3363 5415 -342 6 1229 312 339 119 25 chr5 84451897 84452133 -68085126 + MLT2D LTR ERVL 5 262 -152 6 1229 23 0 0 0 chr5 84452149 84452172 -68085087 + AT_rich Low_complexity Low_complexity 1 23 0 6 1229 663 84 0 0 chr5 84452877 84452972 -68084287 + (GAAA)n Simple_repeat Simple_repeat 4 98 0 6 1229 466 372 32 0 chr5 84456274 84456430 -68080829 + B4 SINE B4 124 284 -8 6 1229 258 32 0 0 chr5 84456430 84456461 -68080798 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1229 666 0 0 0 chr5 84456949 84457023 -68080236 + (TC)n Simple_repeat Simple_repeat 1 74 0 6 1229 27 0 0 0 chr5 84457366 84457393 -68079866 + AT_rich Low_complexity Low_complexity 1 27 0 6 1229 306 372 74 20 chr5 84457946 84458094 -68079165 - HAL1-3A_ME LINE L1 -419 2439 2284 6 1229 3260 49 0 7 chr5 84458178 84458587 -68078672 - L1Md_F2 LINE L1 0 6582 6177 6 1229 1950 138 8 52 chr5 84459341 84459707 -68077552 + Lx2 LINE L1 6646 6995 -2 6 1229 351 0 0 0 chr5 84459839 84459878 -68077381 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6 1229 210 331 106 35 chr5 84460609 84460750 -68076509 + RSINE1 SINE B4 15 165 0 6 1229 398 204 248 28 chr5 84461653 84461792 -68075467 - RMER6D LTR ERVK -3 717 548 6 1229 1260 274 69 74 chr5 84461792 84462592 -68074667 + RMER12 LTR ERVK 1 777 -1071 6 1229 1681 227 164 36 chr5 84462842 84463423 -68073836 - RMER6C LTR ERVK -35 655 1 6 1229 2454 129 12 29 chr5 84463560 84463974 -68073285 - Lx LINE L1 0 6654 6248 6 1229 854 283 113 18 chr5 84464540 84464875 -68072384 + MTD LTR MaLR 3 369 -50 6 1229 507 33 0 0 chr5 84464968 84465029 -68072230 + (GA)n Simple_repeat Simple_repeat 1 61 0 6 1229 300 302 95 86 chr5 84465764 84465985 -68071274 - MER63B DNA AcHobo 0 436 214 6 1229 219 69 0 0 chr5 84465987 84466016 -68071243 + (ATG)n Simple_repeat Simple_repeat 2 30 0 6 1229 2508 101 30 5 chr5 84466088 84466455 -68070804 - L1Md_F2 LINE L1 -12 6570 6195 6 1229 27 49 0 0 chr5 84466559 84466600 -68070659 + AT_rich Low_complexity Low_complexity 1 41 0 6 1229 759 52 0 0 chr5 84467639 84467735 -68069524 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 1229 1638 318 101 35 chr5 84467763 84468263 -68068996 + Lx9 LINE L1 6397 6907 -737 6 1229 2779 61 0 3 chr5 84468263 84468609 -68068650 + IAPLTR4 LTR ERVK 1 345 0 6 1229 1638 318 101 35 chr5 84468609 84468974 -68068285 + Lx9 LINE L1 6908 7310 -334 6 1229 387 103 124 22 chr5 84468974 84469063 -68068196 + L1_Mus3 LINE L1 6541 6638 0 6 1229 1638 318 101 35 chr5 84469063 84469134 -68068125 + Lx9 LINE L1 7311 7396 -248 6 1229 1065 106 0 0 chr5 84469246 84469387 -68067872 - B1_Mus1 SINE Alu -6 142 2 6 1229 360 237 126 8 chr5 84470729 84470848 -68066411 + MLT1B LTR MaLR 29 161 -229 6 1229 8695 144 12 18 chr5 84470848 84472505 -68064754 - Lx2 LINE L1 0 6997 5339 6 1229 4573 165 48 8 chr5 84472483 84473375 -68063884 + Lx2 LINE L1 4377 5304 -573 6 1229 326 365 73 10 chr5 84473387 84473592 -68063667 + MLT1B LTR MaLR 170 387 -3 6 1229 615 27 0 0 chr5 84473613 84473686 -68063573 + (TC)n Simple_repeat Simple_repeat 2 74 0 6 1229 1045 71 13 6 chr5 84473708 84473864 -68063395 + (TTTC)n Simple_repeat Simple_repeat 2 158 0 6 1229 3225 163 37 10 chr5 84473892 84474487 -68062772 + Lx2B LINE L1 6390 7000 0 6 1229 4545 72 0 2 chr5 84474505 84475093 -68062166 + L1_Mus1 LINE L1 5980 6566 -1 6 1229 903 329 81 3 chr5 84475531 84475863 -68061396 - MTE2b LTR MaLR -21 358 1 6 1229 28 61 0 0 chr5 84477064 84477113 -68060146 + AT_rich Low_complexity Low_complexity 1 49 0 6 1229 319 311 9 28 chr5 84479291 84479397 -68057862 + RSINE1 SINE B4 3 106 -59 6 1229 2771 268 90 74 chr5 84479397 84479884 -68057375 + MERVL_2A-int LTR ERVL 4162 4651 -1110 6 1229 348 64 0 0 chr5 84479884 84479931 -68057328 + (GTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1229 2771 268 90 74 chr5 84479931 84480557 -68056702 + MERVL_2A-int LTR ERVL 4652 5293 -468 6 1229 203 171 0 0 chr5 84480767 84480808 -68056451 + (CAAAC)n Simple_repeat Simple_repeat 2 42 0 6 1229 5114 118 63 1 chr5 84480886 84481700 -68055559 + Lx LINE L1 5773 6636 -18 6 1229 21 71 0 0 chr5 84481712 84481754 -68055505 + AT_rich Low_complexity Low_complexity 1 42 0 6 1229 388 359 8 37 chr5 84482303 84482549 -68054710 + Lx7 LINE L1 7092 7330 -366 6 1229 255 61 0 0 chr5 84482553 84482586 -68054673 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1229 293 287 9 56 chr5 84482731 84482770 -68054489 - B3 SINE B2 -5 211 173 6 1229 360 0 0 0 chr5 84482770 84482810 -68054449 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1229 293 287 9 56 chr5 84482810 84482877 -68054382 - B3 SINE B2 -44 172 110 6 1229 192 40 0 0 chr5 84483468 84483493 -68053766 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1229 21 0 0 0 chr5 84483818 84483839 -68053420 + AT_rich Low_complexity Low_complexity 1 21 0 6 1229 297 128 0 0 chr5 84487329 84487376 -68049883 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1229 292 356 0 11 chr5 84489679 84489767 -68047492 - MER20 DNA MER1_type -35 184 98 6 1229 582 28 0 0 chr5 84490659 84490731 -68046528 + (TG)n Simple_repeat Simple_repeat 2 73 0 6 1229 423 0 0 0 chr5 84490780 84490827 -68046432 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 6 1229 1071 74 0 0 chr5 84490827 84490962 -68046297 - B1_Mm SINE Alu -12 135 1 6 1229 1083 80 0 0 chr5 84491520 84491658 -68045601 + B1_Mus2 SINE Alu 1 138 -9 6 1229 356 16 16 47 chr5 84491658 84491722 -68045537 + (CAAAA)n Simple_repeat Simple_repeat 2 63 0 6 1229 349 158 35 28 chr5 84492087 84492230 -68045029 + (CAGA)n Simple_repeat Simple_repeat 1 144 0 6 1229 264 59 0 0 chr5 84492510 84492544 -68044715 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 6 1229 25 0 0 0 chr5 84492769 84492794 -68044465 + AT_rich Low_complexity Low_complexity 1 25 0 6 1229 310 130 0 0 chr5 84492917 84492971 -68044288 - Lx2 LINE L1 -5 6992 6939 6 1229 198 47 22 65 chr5 84493321 84493367 -68043892 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 6 1229 887 121 7 0 chr5 84493367 84493508 -68043751 - B1_Mus1 SINE Alu 0 148 7 6 1229 330 323 56 67 chr5 84493369 84493548 -68043711 - B4A SINE B4 -68 224 48 6 1229 35 24 0 0 chr5 84493629 84493671 -68043588 + AT_rich Low_complexity Low_complexity 1 42 0 6 1229 1455 12 0 24 chr5 84495567 84495814 -68041445 + (TTTCC)n Simple_repeat Simple_repeat 1 240 0 6 1229 688 170 0 12 chr5 84495819 84495980 -68041279 + CT-rich Low_complexity Low_complexity 2 160 0 6 1229 2368 272 130 46 chr5 84497142 84497957 -68039302 + Lx9 LINE L1 6525 7359 -285 6 1229 222 37 0 0 chr5 84497957 84497984 -68039275 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1229 2368 272 130 46 chr5 84497984 84498063 -68039196 + Lx9 LINE L1 7360 7487 -157 6 1229 288 0 0 0 chr5 84498063 84498095 -68039164 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1229 2368 272 130 46 chr5 84498095 84498233 -68039026 + Lx9 LINE L1 7488 7643 -1 6 1229 39 0 0 0 chr5 84498510 84498549 -68038710 + AT_rich Low_complexity Low_complexity 1 39 0 7 1229 675 197 13 33 chr5 84500493 84500645 -68036614 + B1_Mur1 SINE Alu 1 149 0 1 1229 197 86 16 49 chr5 84501870 84501931 -68035328 + T-rich Low_complexity Low_complexity 2 60 0 2 1229 949 234 116 35 chr5 84502237 84502583 -68034676 + ORR1D1 LTR MaLR 1 374 0 3 1229 1960 254 37 76 chr5 84502583 84503256 -68034003 + ORR1D1-int LTR MaLR 1 647 -723 3 1229 1370 255 36 22 chr5 84503263 84503676 -68033583 + Lx2B LINE L1 6541 7054 -4 4 1229 1322 313 61 46 chr5 84503707 84504229 -68033030 + ORR1D1-int LTR MaLR 669 1198 -172 3 1229 761 277 11 0 chr5 84504282 84504466 -68032793 + ORR1D1 LTR MaLR 179 364 -6 3 1229 192 182 0 0 chr5 84505396 84505440 -68031819 + CT-rich Low_complexity Low_complexity 2 45 0 5 1229 1361 238 82 27 chr5 84506192 84506568 -68030691 - MTD LTR MaLR -12 407 11 6 1229 244 311 50 8 chr5 84507261 84507365 -68029894 + MIRb SINE MIR 84 188 -80 7 1229 37 39 0 0 chr5 84507369 84507420 -68029839 + AT_rich Low_complexity Low_complexity 1 51 0 8 1229 2230 90 31 6 chr5 84507477 84507801 -68029458 - L1_Mus3 LINE L1 -7 6631 6300 9 1229 1262 113 0 20 chr5 84508178 84508376 -68028883 + B2_Mm2 SINE B2 2 195 0 1 1229 1878 62 0 8 chr5 84508535 84508779 -68028480 + L1Md_F2 LINE L1 6251 6492 -90 1 1229 993 231 4 13 chr5 84509228 84509456 -68027803 - URR1A DNA MER1_type 0 226 1 1 1229 194 193 18 0 chr5 84510256 84510313 -68026946 + (CATATA)n Simple_repeat Simple_repeat 6 63 0 1 1229 342 0 0 0 chr5 84511120 84511158 -68026101 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1229 246 295 71 102 chr5 84511300 84511496 -68025763 - B3A SINE B2 -4 194 5 1 1229 414 276 24 79 chr5 84511509 84511634 -68025625 - PB1D7 SINE Alu -25 122 9 1 1229 410 0 20 0 chr5 84512873 84512923 -68024336 + (TA)n Simple_repeat Simple_repeat 2 52 0 1 1229 21 0 0 0 chr5 84512946 84512967 -68024292 + AT_rich Low_complexity Low_complexity 1 21 0 1 1229 1950 190 26 69 chr5 84513044 84513462 -68023797 - MTC LTR MaLR -9 412 13 1 1229 23 33 0 0 chr5 84513519 84513549 -68023710 + AT_rich Low_complexity Low_complexity 1 30 0 2 1229 516 16 0 0 chr5 84514164 84514225 -68023034 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1229 402 79 0 0 chr5 84514226 84514289 -68022970 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 2 1229 207 100 0 0 chr5 84514798 84514828 -68022431 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1229 231 130 36 18 chr5 84514922 84514977 -68022282 + Lx8 LINE L1 7416 7471 -2 2 1229 295 266 0 52 chr5 84515011 84515126 -68022133 + T-rich Low_complexity Low_complexity 3 111 0 2 1229 255 31 0 0 chr5 84515191 84515223 -68022036 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2 1229 884 104 43 29 chr5 84515631 84515769 -68021490 + B1_Mus1 SINE Alu 2 141 -7 2 1229 271 0 0 100 chr5 84515792 84515852 -68021407 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 2 1229 327 227 0 0 chr5 84515997 84516094 -68021165 + (TA)n Simple_repeat Simple_repeat 1 97 0 2 1229 240 35 0 0 chr5 84516099 84516128 -68021131 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1229 652 271 158 19 chr5 84516233 84516500 -68020759 - MTD LTR MaLR 0 419 105 3 1229 495 48 0 0 chr5 84516500 84516562 -68020697 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1229 652 271 158 19 chr5 84516562 84516662 -68020597 - MTD LTR MaLR -315 104 2 3 1229 588 343 29 19 chr5 84516662 84516870 -68020389 - B4A SINE B4 -82 210 1 3 1229 278 365 99 37 chr5 84517715 84517877 -68019382 + MLT2B3 LTR ERVL 373 544 -10 3 1229 208 294 32 32 chr5 84517885 84517980 -68019279 + MIR SINE MIR 72 166 -96 3 1229 494 288 98 38 chr5 84519017 84519449 -68017810 + Lx7 LINE L1 5443 5906 -1790 3 1229 180 0 0 0 chr5 84519467 84519487 -68017772 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 1229 523 304 143 7 chr5 84520638 84520939 -68016320 - MER2 DNA MER2_type -1 344 3 3 1229 23 0 0 0 chr5 84521793 84521816 -68015443 + AT_rich Low_complexity Low_complexity 1 23 0 3 1229 441 0 0 0 chr5 84522253 84522302 -68014957 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1229 255 31 0 0 chr5 84522532 84522564 -68014695 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1229 231 310 56 72 chr5 84522698 84522823 -68014436 - B1_Mur2 SINE Alu 0 149 27 4 1229 378 0 0 0 chr5 84522857 84522899 -68014360 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1229 305 331 16 0 chr5 84523018 84523145 -68014114 + MER5A1 DNA MER1_type 2 130 -36 4 1229 348 289 52 39 chr5 84524289 84524444 -68012815 - B4 SINE B4 -127 165 9 4 1229 23 0 0 0 chr5 84524778 84524801 -68012458 + AT_rich Low_complexity Low_complexity 1 23 0 4 1229 651 158 0 48 chr5 84525629 84525775 -68011484 + Lx2 LINE L1 6858 6996 -1 4 1229 1076 66 20 7 chr5 84525816 84525969 -68011290 + B2_Mm2 SINE B2 2 156 -39 4 1229 557 52 13 0 chr5 84525972 84526049 -68011210 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 4 1229 1137 327 31 56 chr5 84526107 84526790 -68010469 + Lx9 LINE L1 6526 7191 -453 5 1229 256 24 0 47 chr5 84527296 84527339 -68009920 + (TA)n Simple_repeat Simple_repeat 2 42 0 5 1229 3830 99 37 31 chr5 84527339 84527955 -68009304 - L1_Mus1 LINE L1 -1658 4225 3606 5 1229 10990 96 9 1 chr5 84527946 84530256 -68007003 + L1_Mus1 LINE L1 4240 6567 0 5 1229 533 358 21 68 chr5 84530555 84530834 -68006425 + B4 SINE B4 25 290 -2 5 1229 24 32 0 0 chr5 84531059 84531090 -68006169 + AT_rich Low_complexity Low_complexity 1 31 0 5 1229 23 0 0 0 chr5 84533668 84533691 -68003568 + AT_rich Low_complexity Low_complexity 1 23 0 5 1229 198 0 0 0 chr5 84533830 84533852 -68003407 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 5 1229 201 213 0 21 chr5 84534363 84534411 -68002848 + T-rich Low_complexity Low_complexity 2 48 0 5 1229 563 223 72 0 chr5 84534624 84534763 -68002496 + URR1B DNA MER1_type 77 225 0 5 1229 459 0 0 0 chr5 84534805 84534856 -68002403 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1229 230 156 0 0 chr5 84537471 84537516 -67999743 + CT-rich Low_complexity Low_complexity 51 95 0 6 1229 603 248 30 0 chr5 84538382 84538515 -67998744 - B1_Mur2 SINE Alu 0 149 13 6 1230 478 296 0 15 chr5 84541485 84541622 -67995637 - B1_Mur1 SINE Alu -6 143 9 6 1230 403 392 19 72 chr5 84542764 84542973 -67994286 - B3A SINE B2 0 198 1 6 1230 389 331 0 7 chr5 84544498 84544644 -67992615 + (TG)n Simple_repeat Simple_repeat 2 146 0 6 1230 325 377 54 0 chr5 84545549 84545679 -67991580 + B3 SINE B2 14 150 -66 6 1230 279 114 0 0 chr5 84545683 84545727 -67991532 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1230 22 0 0 0 chr5 84546004 84546026 -67991233 + AT_rich Low_complexity Low_complexity 1 22 0 6 1230 207 162 0 0 chr5 84548387 84548424 -67988835 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 6 1230 5563 29 0 6 chr5 84548481 84549144 -67988115 - L1Md_F3 LINE L1 -14 6570 5912 6 1230 216 324 46 28 chr5 84549817 84549925 -67987334 + MIRb SINE MIR 99 208 -60 7 1230 300 53 0 0 chr5 84550711 84550749 -67986510 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1230 1006 279 70 22 chr5 84551630 84552030 -67985229 - MTD LTR MaLR 0 419 1 7 1230 191 103 0 25 chr5 84553474 84553514 -67983745 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1230 752 348 65 31 chr5 84553717 84554132 -67983127 + BGLII_B LTR ERVK 5 433 -8 7 1230 2340 121 60 118 chr5 84555319 84555870 -67981389 + MURVY-LTR LTR ERV1 1 519 0 7 1230 1072 296 25 17 chr5 84556447 84556853 -67980406 + MYSERV6-int LTR ERVK 453 861 -8098 7 1230 2291 273 98 26 chr5 84556853 84557742 -67979517 + MYSERV6-int LTR ERVK 974 1926 -7033 7 1230 423 333 0 0 chr5 84557753 84557873 -67979386 + BGLII_B LTR ERVK 295 414 -27 7 1230 22 0 0 0 chr5 84557977 84557999 -67979260 + AT_rich Low_complexity Low_complexity 1 22 0 7 1230 4944 70 0 2 chr5 84558068 84558713 -67978546 - L1_Mus1 LINE L1 0 6567 5924 7 1230 421 248 13 81 chr5 84559023 84559172 -67978087 - MamRep434 DNA TcMar -174 252 114 8 1230 289 286 0 30 chr5 84559589 84559690 -67977569 + (TATATG)n Simple_repeat Simple_repeat 2 99 0 8 1230 225 243 0 91 chr5 84559893 84559970 -67977289 - Charlie9 DNA MER1_type -1104 1653 1584 8 1230 234 0 0 0 chr5 84560076 84560102 -67977157 + (GTTTG)n Simple_repeat Simple_repeat 5 30 0 8 1230 24 32 0 0 chr5 84560627 84560658 -67976601 + AT_rich Low_complexity Low_complexity 1 31 0 8 1230 21 82 0 0 chr5 84561457 84561506 -67975753 + AT_rich Low_complexity Low_complexity 1 49 0 8 1230 26 0 0 0 chr5 84561835 84561861 -67975398 + AT_rich Low_complexity Low_complexity 1 26 0 8 1230 465 248 27 27 chr5 84565116 84565250 -67972009 + B1_Mus2 SINE Alu 15 148 -1 8 1230 501 17 0 0 chr5 84565947 84566005 -67971254 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1230 225 374 74 30 chr5 84566219 84566354 -67970905 - L2a LINE L2 -300 3126 2986 8 1230 22 56 0 0 chr5 84566506 84566542 -67970717 + AT_rich Low_complexity Low_complexity 1 36 0 9 1230 569 303 5 32 chr5 84566587 84566805 -67970454 - B3 SINE B2 -3 213 2 9 1230 561 30 0 0 chr5 84566836 84566903 -67970356 + (TA)n Simple_repeat Simple_repeat 1 67 0 9 1230 1147 241 62 129 chr5 84568811 84569041 -67968218 + MTC LTR MaLR 10 216 -205 9 1230 2539 109 40 15 chr5 84569041 84569442 -67967817 + Lx LINE L1 6227 6637 -17 9 1230 360 0 0 0 chr5 84569442 84569482 -67967777 + (TAA)n Simple_repeat Simple_repeat 3 42 0 9 1230 1147 241 62 129 chr5 84569482 84569683 -67967576 + MTC LTR MaLR 217 412 -9 9 1230 365 338 43 0 chr5 84572591 84572730 -67964529 - B3 SINE B2 0 216 72 9 1230 247 247 0 27 chr5 84572736 84572811 -67964448 + Lx8 LINE L1 7401 7473 0 9 1230 706 238 113 113 chr5 84574377 84574523 -67962736 + ORR1D1 LTR MaLR 1 156 -218 9 1230 425 19 19 0 chr5 84574523 84574577 -67962682 + (TC)n Simple_repeat Simple_repeat 1 55 0 9 1230 414 0 0 0 chr5 84574577 84574622 -67962637 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1230 706 238 113 113 chr5 84574622 84574801 -67962458 + ORR1D1 LTR MaLR 157 326 -48 9 1230 287 239 157 11 chr5 84574799 84574811 -67962448 + ORR1D1-int LTR MaLR 41 61 -1309 9 1230 305 62 21 0 chr5 84574811 84574859 -67962400 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 1 1230 287 239 157 11 chr5 84574859 84574935 -67962324 + ORR1D1-int LTR MaLR 62 142 -1228 9 1230 427 273 45 28 chr5 84574948 84575125 -67962134 + ORR1D1-int LTR MaLR 393 572 -798 9 1230 22 0 0 0 chr5 84575603 84575625 -67961634 + AT_rich Low_complexity Low_complexity 1 22 0 1 1230 313 373 70 11 chr5 84575630 84575901 -67961358 + B4A SINE B4 2 288 -4 1 1230 760 134 13 0 chr5 84576576 84576733 -67960526 + (TC)n Simple_repeat Simple_repeat 1 159 0 1 1230 366 61 0 0 chr5 84576733 84576782 -67960477 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1230 616 253 140 16 chr5 84576930 84577234 -67960025 + ORR1D1 LTR MaLR 25 370 0 9 1230 259 141 64 0 chr5 84577931 84578009 -67959250 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 1230 460 298 40 65 chr5 84579803 84580004 -67957255 + B3 SINE B2 5 200 -16 1 1230 28 0 0 0 chr5 84580345 84580373 -67956886 + AT_rich Low_complexity Low_complexity 1 28 0 1 1230 26 74 0 0 chr5 84581460 84581514 -67955745 + AT_rich Low_complexity Low_complexity 1 54 0 1 1230 30 0 0 0 chr5 84581903 84581933 -67955326 + AT_rich Low_complexity Low_complexity 1 30 0 1 1230 576 0 0 0 chr5 84582041 84582105 -67955154 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 1 1230 229 289 9 9 chr5 84582773 84582888 -67954371 + (TATATG)n Simple_repeat Simple_repeat 3 117 0 1 1230 350 350 69 50 chr5 84582908 84583185 -67954074 - B4 SINE B4 -6 286 5 1 1230 37 23 0 0 chr5 84583718 84583762 -67953497 + AT_rich Low_complexity Low_complexity 1 44 0 1 1230 324 127 0 0 chr5 84584430 84584485 -67952774 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1230 343 115 46 0 chr5 84584600 84584687 -67952572 + (TCTG)n Simple_repeat Simple_repeat 4 94 0 1 1230 693 24 0 0 chr5 84584835 84584918 -67952341 + (TC)n Simple_repeat Simple_repeat 1 83 0 1 1230 334 345 122 12 chr5 84584945 84585200 -67952059 - B4A SINE B4 -8 284 2 1 1230 21 0 0 0 chr5 84585712 84585733 -67951526 + AT_rich Low_complexity Low_complexity 1 21 0 1 1230 398 36 36 0 chr5 84586531 84586586 -67950673 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 1 1230 348 315 79 32 chr5 84586760 84586950 -67950309 - MER2 DNA MER2_type -146 199 1 1 1230 31 0 0 0 chr5 84587160 84587191 -67950068 + AT_rich Low_complexity Low_complexity 1 31 0 1 1230 7298 88 9 10 chr5 84587298 84588930 -67948329 + L1_Mus2 LINE L1 4939 6565 -1 1 1230 1168 315 106 29 chr5 84589216 84589912 -67947347 + Lx9 LINE L1 6251 7000 -644 1 1230 1075 208 93 7 chr5 84589921 84590231 -67947028 - Lx9 LINE L1 -9 7635 7299 1 1230 1285 72 6 0 chr5 84590563 84590897 -67946362 + (TAGA)n Simple_repeat Simple_repeat 1 336 0 1 1230 495 0 0 0 chr5 84591196 84591251 -67946008 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1230 281 292 0 27 chr5 84591457 84591531 -67945728 + B3 SINE B2 60 131 -85 1 1230 333 68 0 0 chr5 84591531 84591575 -67945684 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1230 312 250 0 0 chr5 84591868 84591932 -67945327 + PB1D10 SINE Alu 48 111 -6 1 1230 25 0 0 0 chr5 84591938 84591963 -67945296 + AT_rich Low_complexity Low_complexity 1 25 0 1 1230 1692 48 8 73 chr5 84592730 84592976 -67944283 + L1Md_F2 LINE L1 6350 6579 -3 1 1230 352 353 27 17 chr5 84594128 84594422 -67942837 - L1MC3 LINE L1 -480 7305 7009 1 1230 330 98 0 0 chr5 84594650 84594701 -67942558 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1 1230 372 43 0 0 chr5 84595759 84595805 -67941454 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1230 369 0 0 0 chr5 84595805 84595845 -67941414 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1230 186 125 125 0 chr5 84595848 84595888 -67941371 + L3 LINE CR1 3859 3903 -586 1 1230 374 229 27 5 chr5 84595956 84596063 -67941196 + B3A SINE B2 3 110 -106 1 1230 228 182 0 0 chr5 84596508 84596552 -67940707 - B2_Mm2 SINE B2 -98 97 54 1 1230 307 294 115 60 chr5 84596780 84596997 -67940262 - MER47B DNA MER2_type -152 266 38 1 1230 198 103 0 0 chr5 84598518 84598547 -67938712 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1230 355 203 115 15 chr5 84599138 84599268 -67937991 - Lx4A LINE L1 -1 7057 6915 1 1230 1213 300 148 54 chr5 84599558 84600014 -67937245 + Lx7 LINE L1 6555 7042 -654 1 1230 189 74 0 0 chr5 84600014 84600041 -67937218 + (CACAA)n Simple_repeat Simple_repeat 3 29 0 1 1230 1213 300 148 54 chr5 84600041 84600274 -67936985 + Lx7 LINE L1 7043 7309 -387 1 1230 357 24 0 0 chr5 84600297 84600339 -67936920 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1230 25 31 0 0 chr5 84600463 84600495 -67936764 + AT_rich Low_complexity Low_complexity 1 32 0 1 1230 2892 47 14 14 chr5 84600583 84600951 -67936308 + ETnERV-int LTR ERVK 2947 3314 0 1 1230 1791 115 28 25 chr5 84600951 84601272 -67935987 + RLTRETN_Mm LTR ERVK 1 322 0 1 1230 417 200 9 0 chr5 84602087 84602202 -67935057 + Lx9 LINE L1 7528 7643 -1 1 1230 939 26 0 0 chr5 84603475 84603589 -67933670 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 1 1230 290 240 38 7 chr5 84604975 84605073 -67932186 + B1F SINE Alu 21 118 -2 1 1230 203 0 0 36 chr5 84605661 84605689 -67931570 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1230 855 120 53 0 chr5 84605692 84605825 -67931434 - B1_Mus1 SINE Alu -6 142 3 1 1230 22 35 0 0 chr5 84605878 84605907 -67931352 + AT_rich Low_complexity Low_complexity 1 29 0 1 1230 23 0 0 0 chr5 84607097 84607120 -67930139 + AT_rich Low_complexity Low_complexity 1 23 0 1 1230 413 81 16 0 chr5 84607215 84607277 -67929982 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1230 1423 82 0 0 chr5 84607572 84607766 -67929493 - L1_Mur2 LINE L1 -1693 4184 3991 1 1230 2404 108 5 51 chr5 84607766 84608158 -67929101 + L1_Mus2 LINE L1 6192 6565 -1 1 1230 7048 101 25 6 chr5 84608661 84609688 -67927571 + L1_Mus3 LINE L1 5588 6634 -4 1 1230 696 154 0 0 chr5 84609995 84610118 -67927141 + (TA)n Simple_repeat Simple_repeat 1 123 0 1 1230 189 0 0 0 chr5 84610119 84610140 -67927119 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1 1230 23 0 0 0 chr5 84610680 84610703 -67926556 + AT_rich Low_complexity Low_complexity 1 23 0 1 1230 3370 146 50 19 chr5 84610772 84611394 -67925865 + Lx2B LINE L1 6355 6995 -5 1 1230 258 32 0 0 chr5 84612243 84612274 -67924985 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1230 225 415 35 14 chr5 84612289 84612433 -67924826 - B4A SINE B4 -131 161 15 1 1230 355 348 64 68 chr5 84612641 84612946 -67924313 + MLT1A LTR MaLR 30 333 -41 1 1230 30 0 0 0 chr5 84613198 84613228 -67924031 + AT_rich Low_complexity Low_complexity 1 30 0 1 1230 3455 36 0 5 chr5 84613877 84614296 -67922963 - L1Md_T LINE L1 0 6582 6166 1 1230 204 312 26 10 chr5 84615409 84615516 -67921743 - MIR SINE MIR -90 178 78 1 1230 594 197 188 0 chr5 84615669 84615882 -67921377 - Lx9 LINE L1 -2 7642 7390 1 1230 1332 50 11 0 chr5 84617203 84617383 -67919876 - L1Md_A LINE L1 -1 6581 6400 1 1230 2809 54 0 0 chr5 84617622 84617974 -67919285 + L1Md_F2 LINE L1 5234 5585 -298 1 1230 7765 58 6 0 chr5 84617975 84618965 -67918294 + L1Md_F2 LINE L1 5587 6582 0 1 1230 600 84 0 0 chr5 84619030 84619113 -67918146 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1230 1929 119 19 3 chr5 84619329 84619641 -67917618 - L1_Mus3 LINE L1 0 6638 6322 1 1230 23 0 0 0 chr5 84619827 84619850 -67917409 + AT_rich Low_complexity Low_complexity 1 23 0 1 1230 3830 58 2 6 chr5 84620130 84620619 -67916640 + L1Md_F2 LINE L1 6093 6579 -3 1 1230 321 26 0 0 chr5 84620623 84620661 -67916598 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 1 1230 860 281 87 40 chr5 84620679 84621401 -67915858 + L1M2 LINE L1 3248 3969 -1911 1 1230 21 36 0 0 chr5 84621783 84621811 -67915448 + AT_rich Low_complexity Low_complexity 1 28 0 1 1230 632 326 56 0 chr5 84621906 84622102 -67915157 + B3 SINE B2 1 207 -9 1 1230 29 28 0 0 chr5 84622106 84622142 -67915117 + AT_rich Low_complexity Low_complexity 1 36 0 1 1230 1654 132 78 3 chr5 84622708 84622990 -67914269 + L1_Mus3 LINE L1 6320 6622 -16 1 1230 623 94 0 10 chr5 84622990 84623087 -67914172 + (TA)n Simple_repeat Simple_repeat 2 97 0 1 1230 725 272 30 0 chr5 84623440 84623642 -67913617 + B3 SINE B2 1 208 -8 1 1230 225 65 0 0 chr5 84623848 84623879 -67913380 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1 1230 1436 65 16 0 chr5 84624622 84624808 -67912451 + B2_Mm2 SINE B2 1 189 -6 1 1230 3639 174 46 8 chr5 84626116 84626838 -67910421 + RMER6A LTR ERVK 1 749 -7 1 1230 24 32 0 0 chr5 84626857 84626888 -67910371 + AT_rich Low_complexity Low_complexity 1 31 0 1 1230 28 61 0 0 chr5 84626987 84627036 -67910223 + AT_rich Low_complexity Low_complexity 1 49 0 1 1230 559 268 93 16 chr5 84627066 84627259 -67910000 + B3 SINE B2 3 210 -6 1 1230 438 79 0 0 chr5 84627567 84627630 -67909629 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 1 1230 8352 30 0 0 chr5 84627635 84628917 -67908342 - L1Md_T LINE L1 0 6582 5301 1 1230 369 62 0 0 chr5 84628927 84628975 -67908284 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1 1230 1665 120 59 17 chr5 84628980 84629268 -67907991 - Lx3A LINE L1 0 6981 6682 1 1230 769 228 0 0 chr5 84629388 84629533 -67907726 + Lx2B LINE L1 6688 6832 -168 1 1230 476 343 43 29 chr5 84629994 84630201 -67907058 - B3 SINE B2 0 216 7 1 1230 317 193 78 17 chr5 84630923 84631039 -67906220 + Lx6 LINE L1 7337 7459 -1 1 1230 672 48 0 0 chr5 84631045 84631129 -67906130 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 1 1230 525 32 0 0 chr5 84631639 84631702 -67905557 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1230 248 309 36 102 chr5 84631709 84631811 -67905448 - B1F1 SINE Alu 0 149 55 1 1230 1044 151 0 0 chr5 84631811 84631990 -67905269 + CT-rich Low_complexity Low_complexity 2 180 0 2 1230 238 26 0 49 chr5 84631990 84632031 -67905228 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1230 1123 36 7 0 chr5 84632031 84632168 -67905091 - B1_Mus1 SINE Alu -9 139 2 2 1230 248 313 40 100 chr5 84632168 84632219 -67905040 - B1F1 SINE Alu -95 54 4 1 1230 510 341 29 9 chr5 84632230 84632440 -67904819 - B4 SINE B4 -77 215 2 2 1230 882 148 148 0 chr5 84633357 84633539 -67903720 + Lx2 LINE L1 6787 6995 -2 2 1230 23 33 0 0 chr5 84633549 84633579 -67903680 + AT_rich Low_complexity Low_complexity 1 30 0 2 1230 2019 90 10 16 chr5 84633907 84634211 -67903048 - L1_Mus3 LINE L1 -3 6635 6334 2 1230 1501 125 0 0 chr5 84634211 84634427 -67902832 + L1_Mus3 LINE L1 6107 6322 -316 2 1230 26 0 0 0 chr5 84635189 84635215 -67902044 + AT_rich Low_complexity Low_complexity 1 26 0 2 1230 22 35 0 0 chr5 84636271 84636300 -67900959 + AT_rich Low_complexity Low_complexity 1 29 0 2 1230 432 0 0 0 chr5 84636328 84636376 -67900883 + (TTAG)n Simple_repeat Simple_repeat 4 51 0 2 1230 234 296 110 12 chr5 84636382 84636464 -67900795 - PB1D10 SINE Alu -9 108 19 2 1230 1489 344 78 33 chr5 84636488 84637501 -67899758 + Lx8 LINE L1 6412 7470 -3 2 1230 273 344 95 30 chr5 84638065 84638233 -67899026 + B4A SINE B4 43 221 -71 2 1230 1063 138 22 11 chr5 84638245 84638428 -67898831 + B2_Mm2 SINE B2 2 186 -9 2 1230 490 191 8 8 chr5 84638661 84638788 -67898471 + (TA)n Simple_repeat Simple_repeat 2 128 0 2 1230 21 0 0 0 chr5 84638886 84638907 -67898352 + AT_rich Low_complexity Low_complexity 1 21 0 2 1230 1977 316 40 29 chr5 84639502 84640378 -67896881 - Lx8 LINE L1 -2 7471 6586 2 1230 246 219 0 0 chr5 84640395 84640436 -67896823 - Lx8 LINE L1 -972 6501 6461 2 1230 261 261 84 28 chr5 84640706 84640848 -67896411 + Lx8 LINE L1 7322 7471 -2 2 1230 5732 84 30 22 chr5 84640866 84641754 -67895505 + Lx3_Mus LINE L1 6115 7009 0 2 1230 28 29 0 0 chr5 84641815 84641850 -67895409 + AT_rich Low_complexity Low_complexity 1 35 0 2 1230 378 61 0 0 chr5 84641855 84641904 -67895355 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1230 503 347 79 62 chr5 84642570 84642874 -67894385 + ORR1E LTR MaLR 1 309 -50 2 1230 5840 66 4 0 chr5 84643082 84643837 -67893422 + L1_Mus1 LINE L1 5810 6567 0 2 1230 295 274 0 81 chr5 84646040 84646138 -67891121 - B1_Mur2 SINE Alu -10 110 20 2 1230 191 62 62 0 chr5 84646429 84646461 -67890798 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 2 1230 225 232 43 14 chr5 84646464 84646534 -67890725 + CT-rich Low_complexity Low_complexity 1 72 0 2 1230 433 332 29 5 chr5 84646778 84646984 -67890275 - B3 SINE B2 -5 211 1 2 1230 381 189 0 0 chr5 84648624 84648719 -67888540 + GA-rich Low_complexity Low_complexity 2 96 0 2 1230 4157 11 2 0 chr5 84649248 84649726 -67887533 + L1Md_A LINE L1 5108 5586 -297 2 1230 8720 15 0 0 chr5 84649726 84650722 -67886537 + L1Md_A LINE L1 5587 6582 0 2 1230 279 101 14 42 chr5 84651540 84651612 -67885647 + T-rich Low_complexity Low_complexity 2 71 0 2 1230 734 277 102 20 chr5 84651629 84651883 -67885376 + Lx8 LINE L1 6266 6540 -933 2 1230 474 151 58 87 chr5 84651910 84652048 -67885211 + RLTR15 LTR ERVK 187 320 -39 2 1230 384 22 0 0 chr5 84652185 84652230 -67885029 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1230 31 58 0 0 chr5 84652878 84652930 -67884329 + AT_rich Low_complexity Low_complexity 1 52 0 2 1230 557 184 21 21 chr5 84653021 84653165 -67884094 - Lx2A1 LINE L1 -5 7003 6860 2 1230 880 321 29 4 chr5 84653180 84653458 -67883801 + MYSERV-int LTR ERVK 4843 5127 -1423 2 1230 373 341 30 20 chr5 84653459 84653642 -67883617 + RMER4A LTR ERVK 254 542 -43 2 1230 3820 211 75 31 chr5 84653649 84654824 -67882435 + MYSERV6-int LTR ERVK 7813 8890 -69 2 1230 1458 48 27 0 chr5 84654824 84655010 -67882249 + B2_Mm1t SINE B2 1 191 -2 2 1230 2298 255 81 75 chr5 84655010 84655119 -67882140 + MYSERV6-int LTR ERVK 6465 6546 -4 2 1230 1258 218 27 24 chr5 84655122 84655460 -67881799 + RLTR15 LTR ERVK 3 341 -18 2 1230 864 383 50 12 chr5 84655480 84656066 -67881193 + Lx8 LINE L1 6580 7187 -286 2 1230 26 0 0 0 chr5 84656306 84656332 -67880927 + AT_rich Low_complexity Low_complexity 1 26 0 2 1230 21 57 0 0 chr5 84656446 84656481 -67880778 + AT_rich Low_complexity Low_complexity 1 35 0 2 1230 581 261 55 38 chr5 84656741 84656924 -67880335 + Lx7 LINE L1 6152 6337 -1359 2 1230 23 33 0 0 chr5 84657031 84657061 -67880198 + AT_rich Low_complexity Low_complexity 1 30 0 2 1230 241 154 0 19 chr5 84658127 84658180 -67879079 + B1_Mur4 SINE Alu 99 150 0 2 1230 378 0 0 0 chr5 84658203 84658245 -67879014 + (CAAAC)n Simple_repeat Simple_repeat 3 44 0 2 1230 327 104 0 0 chr5 84658245 84658293 -67878966 + (A)n Simple_repeat Simple_repeat 1 48 0 2 1230 540 111 0 0 chr5 84660027 84660108 -67877151 + (T)n Simple_repeat Simple_repeat 1 81 0 2 1230 800 111 89 0 chr5 84660108 84660243 -67877016 - B1_Mm SINE Alu 0 147 1 2 1230 270 0 0 0 chr5 84660967 84660997 -67876262 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1230 988 104 0 0 chr5 84661120 84661254 -67876005 + B1_Mus2 SINE Alu 1 134 -13 2 1230 182 62 0 30 chr5 84661254 84661287 -67875972 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1230 34 24 0 0 chr5 84661290 84661331 -67875928 + AT_rich Low_complexity Low_complexity 1 41 0 2 1230 32 67 0 0 chr5 84662269 84662329 -67874930 + AT_rich Low_complexity Low_complexity 1 60 0 2 1230 44 46 0 0 chr5 84663027 84663092 -67874167 + AT_rich Low_complexity Low_complexity 1 65 0 2 1230 22 0 0 0 chr5 84663234 84663256 -67874003 + AT_rich Low_complexity Low_complexity 1 22 0 2 1230 384 406 25 25 chr5 84667006 84667289 -67869970 + B4A SINE B4 10 292 0 2 1230 21 0 0 0 chr5 84667887 84667908 -67869351 + AT_rich Low_complexity Low_complexity 1 21 0 2 1230 242 296 24 24 chr5 84668553 84668636 -67868623 - RSINE1 SINE B4 -12 153 71 2 1230 347 380 0 0 chr5 84668973 84669086 -67868173 + RSINE1 SINE B4 3 115 -50 2 1230 537 76 0 0 chr5 84669106 84669185 -67868074 + (CA)n Simple_repeat Simple_repeat 1 79 0 2 1230 389 329 53 7 chr5 84669430 84669580 -67867679 + Tigger5 DNA MER2_type 9 165 -2241 2 1230 357 299 49 37 chr5 84669623 84669786 -67867473 + Tigger5 DNA MER2_type 2211 2375 -31 2 1230 249 108 0 0 chr5 84670697 84670734 -67866525 + (GA)n Simple_repeat Simple_repeat 2 38 0 2 1230 506 318 65 69 chr5 84671526 84671786 -67865473 - Lx8 LINE L1 -145 7328 7070 2 1230 326 204 51 34 chr5 84671811 84671928 -67865331 + L1_Mur3 LINE L1 5223 5341 -539 2 1230 680 252 57 38 chr5 84672073 84672283 -67864976 + B3 SINE B2 1 214 -2 2 1231 4426 182 40 14 chr5 84672591 84673592 -67863667 + Lx4B LINE L1 4901 5961 -1039 2 1231 217 355 79 0 chr5 84673830 84673906 -67863353 + B4 SINE B4 31 112 -180 2 1231 579 122 0 0 chr5 84676444 84676534 -67860725 + (CACG)n Simple_repeat Simple_repeat 1 90 0 2 1231 298 308 66 41 chr5 84677061 84677183 -67860076 - B3 SINE B2 -10 206 82 2 1231 991 239 35 155 chr5 84677251 84677465 -67859794 + ORR1D1 LTR MaLR 5 179 -195 2 1231 225 0 0 0 chr5 84677465 84677490 -67859769 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 2 1231 991 239 35 155 chr5 84677490 84677681 -67859578 + ORR1D1 LTR MaLR 180 361 -13 2 1231 27 0 0 0 chr5 84678080 84678107 -67859152 + AT_rich Low_complexity Low_complexity 1 27 0 2 1231 229 154 37 37 chr5 84678159 84678213 -67859046 + CT-rich Low_complexity Low_complexity 2 55 0 2 1231 237 333 90 30 chr5 84678250 84678383 -67858876 + MLT1G1 LTR MaLR 1 141 -233 2 1231 235 254 82 33 chr5 84678435 84678557 -67858702 + Lx9 LINE L1 7502 7629 -15 2 1231 22 35 0 0 chr5 84678561 84678590 -67858669 + AT_rich Low_complexity Low_complexity 1 29 0 2 1231 314 197 26 66 chr5 84679073 84679149 -67858110 + RSINE1 SINE B4 72 144 -21 2 1231 28 48 0 0 chr5 84679295 84679337 -67857922 + AT_rich Low_complexity Low_complexity 1 42 0 2 1231 5259 45 39 0 chr5 84679368 84680041 -67857218 - L1Md_F3 LINE L1 -14 6570 5872 2 1231 267 357 70 76 chr5 84680590 84680775 -67856484 + MLT1G1 LTR MaLR 348 531 -48 2 1231 2475 182 157 5 chr5 84680769 84681067 -67856192 - RMER6D LTR ERVK -52 668 351 2 1231 378 0 0 0 chr5 84681067 84681109 -67856150 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1231 2475 182 157 5 chr5 84681109 84681390 -67855869 - RMER6D LTR ERVK -370 350 1 2 1231 200 316 193 61 chr5 84681448 84681842 -67855417 + L2 LINE L2 597 1042 -2377 2 1231 280 339 95 9 chr5 84681975 84682091 -67855168 + L2 LINE L2 1260 1385 -2034 2 1231 588 42 0 0 chr5 84682288 84682360 -67854899 - L1Md_F2 LINE L1 -653 5929 5858 2 1231 5166 54 1 5 chr5 84682360 84683014 -67854245 + L1Md_F2 LINE L1 5931 6582 0 2 1231 436 338 102 11 chr5 84683634 84683918 -67853341 + MLT2B1 LTR ERVL 10 319 -201 2 1231 21 36 0 0 chr5 84685895 84685923 -67851336 + AT_rich Low_complexity Low_complexity 1 28 0 2 1231 1218 128 0 26 chr5 84686486 84686679 -67850580 - B2_Mm2 SINE B2 -6 189 2 2 1231 817 81 0 54 chr5 84686905 84687035 -67850224 + B1_Mm SINE Alu 25 147 0 2 1231 864 147 14 14 chr5 84687150 84687295 -67849964 + B1_Mus1 SINE Alu 3 147 -1 2 1231 284 275 0 0 chr5 84687297 84687432 -67849827 + A-rich Low_complexity Low_complexity 1 135 0 2 1231 417 39 0 0 chr5 84687667 84687718 -67849541 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1231 1167 53 0 0 chr5 84687803 84687954 -67849305 + (TG)n Simple_repeat Simple_repeat 2 152 0 2 1231 42 48 0 0 chr5 84688250 84688313 -67848946 + AT_rich Low_complexity Low_complexity 1 63 0 2 1231 520 235 5 82 chr5 84689179 84689374 -67847885 - Lx9 LINE L1 -7 7637 7458 2 1231 330 132 0 0 chr5 84689374 84689427 -67847832 + (CATATA)n Simple_repeat Simple_repeat 3 55 0 2 1231 27 0 0 0 chr5 84689741 84689768 -67847491 + AT_rich Low_complexity Low_complexity 1 27 0 2 1231 208 293 196 21 chr5 84690325 84690468 -67846791 + MIRb SINE MIR 99 266 -2 2 1231 22 70 0 0 chr5 84690857 84690900 -67846359 + AT_rich Low_complexity Low_complexity 1 43 0 2 1231 28 0 0 0 chr5 84692320 84692348 -67844911 + AT_rich Low_complexity Low_complexity 1 28 0 2 1231 524 307 40 6 chr5 84692422 84692599 -67844660 - B3 SINE B2 -33 183 1 2 1231 209 159 23 0 chr5 84693872 84693916 -67843343 + CT-rich Low_complexity Low_complexity 3 47 0 2 1231 576 244 22 0 chr5 84693943 84694078 -67843181 - B1_Mur2 SINE Alu -11 138 1 3 1231 568 303 62 19 chr5 84694915 84695171 -67842088 + Lx8 LINE L1 6870 7136 -337 3 1231 450 262 126 18 chr5 84695195 84695362 -67841897 + Lx8 LINE L1 7205 7389 -84 3 1231 21 95 0 0 chr5 84695528 84695591 -67841668 + AT_rich Low_complexity Low_complexity 1 63 0 3 1231 43 35 0 0 chr5 84695815 84695872 -67841387 + AT_rich Low_complexity Low_complexity 1 57 0 3 1231 27 81 0 0 chr5 84696040 84696102 -67841157 + AT_rich Low_complexity Low_complexity 1 62 0 3 1231 24 53 0 0 chr5 84696674 84696712 -67840547 + AT_rich Low_complexity Low_complexity 1 38 0 3 1231 3070 39 31 3 chr5 84697760 84698146 -67839113 - L1_Mus1 LINE L1 0 6567 6171 3 1231 1110 85 0 0 chr5 84698146 84698311 -67838948 + MusHAL1 LINE L1 1225 1389 -1323 3 1231 23 0 0 0 chr5 84698371 84698394 -67838865 + AT_rich Low_complexity Low_complexity 1 23 0 3 1231 859 187 17 12 chr5 84698951 84699124 -67838135 - B2_Mm2 SINE B2 -12 183 10 3 1231 744 83 0 0 chr5 84699124 84699233 -67838026 + (GTTTG)n Simple_repeat Simple_repeat 5 113 0 3 1231 417 282 81 0 chr5 84699490 84699614 -67837645 + B1_Mur4 SINE Alu 2 135 -15 3 1231 836 69 0 8 chr5 84700580 84700697 -67836562 + (TTTA)n Simple_repeat Simple_repeat 4 119 0 3 1231 360 0 0 0 chr5 84700754 84700794 -67836465 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 3 1231 299 109 65 0 chr5 84702583 84702629 -67834630 - RSINE1 SINE B4 -62 103 55 3 1231 25 0 0 0 chr5 84703552 84703577 -67833682 + AT_rich Low_complexity Low_complexity 1 25 0 3 1231 229 219 0 0 chr5 84703645 84703686 -67833573 - LTR90B LTR LTR -751 45 5 3 1231 574 250 98 5 chr5 84703699 84703904 -67833355 - ID_B1 SINE B4 0 224 1 3 1231 650 182 66 0 chr5 84703949 84704070 -67833189 - B3 SINE B2 -86 130 2 3 1231 978 222 55 15 chr5 84704091 84704226 -67833033 - B3 SINE B2 -6 210 67 3 1231 2126 73 3 3 chr5 84704226 84704542 -67832717 - L1_Mus1 LINE L1 0 6567 6281 3 1231 978 222 55 15 chr5 84704542 84704607 -67832652 - B3 SINE B2 -150 66 2 3 1231 378 91 0 0 chr5 84704729 84704784 -67832475 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1231 198 71 0 0 chr5 84704794 84704822 -67832437 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1231 459 0 0 0 chr5 84704857 84704908 -67832351 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 3 1231 271 281 31 0 chr5 84704908 84704972 -67832287 - ID4_ SINE ID -16 67 2 3 1231 208 26 0 93 chr5 84705031 84705074 -67832185 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 3 1231 260 380 0 27 chr5 84705225 84705336 -67831923 + B1F SINE Alu 3 110 -39 3 1231 242 116 0 23 chr5 84705402 84705446 -67831813 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1231 200 233 17 0 chr5 84708145 84708205 -67829054 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 1231 611 112 0 10 chr5 84708460 84708559 -67828700 + (TA)n Simple_repeat Simple_repeat 1 98 0 3 1231 324 0 0 0 chr5 84708559 84708594 -67828665 + (GA)n Simple_repeat Simple_repeat 2 37 0 3 1231 24 0 0 0 chr5 84709214 84709238 -67828021 + AT_rich Low_complexity Low_complexity 1 24 0 3 1231 28 48 0 0 chr5 84709382 84709424 -67827835 + AT_rich Low_complexity Low_complexity 1 42 0 3 1231 236 189 0 0 chr5 84709522 84709575 -67827684 + (TTA)n Simple_repeat Simple_repeat 3 55 0 3 1231 270 0 0 0 chr5 84709794 84709824 -67827435 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 3 1231 282 56 0 0 chr5 84711149 84711185 -67826074 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1231 206 137 59 0 chr5 84712566 84712617 -67824642 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1231 265 177 52 26 chr5 84713132 84713248 -67824011 + (TA)n Simple_repeat Simple_repeat 1 119 0 3 1231 1115 63 0 14 chr5 84713581 84713725 -67823534 + B1_Mm SINE Alu 5 146 -1 3 1231 247 91 18 35 chr5 84713725 84713782 -67823477 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 3 1231 2915 189 8 22 chr5 84713953 84714547 -67822712 + Lx2B LINE L1 6404 6989 -11 3 1231 3416 156 37 3 chr5 84714696 84715312 -67821947 - L1_Mus4 LINE L1 -442 5441 4805 3 1231 7099 111 13 1 chr5 84715310 84715716 -67821543 + L1_Mus4 LINE L1 5456 5861 -22 3 1231 380 19 39 0 chr5 84715716 84715768 -67821491 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 3 1231 7099 103 14 1 chr5 84715768 84716527 -67820732 + L1_Mus4 LINE L1 5862 6633 -3 3 1231 204 40 0 0 chr5 84716559 84716584 -67820675 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1231 681 90 0 0 chr5 84716594 84716705 -67820554 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 3 1231 232 167 34 85 chr5 84717936 84717995 -67819264 + RLTR22_Mur LTR ERVK 1312 1367 -481 3 1231 318 26 0 0 chr5 84717997 84718036 -67819223 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1231 224 246 15 44 chr5 84721065 84721133 -67816126 + CT-rich Low_complexity Low_complexity 5 70 0 3 1231 279 351 45 0 chr5 84721148 84721259 -67816000 - B1F SINE Alu -24 125 10 3 1231 291 114 0 0 chr5 84721660 84721704 -67815555 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1231 278 26 0 25 chr5 84721980 84722020 -67815239 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1231 632 202 18 0 chr5 84722298 84722412 -67814847 - B1_Mur3 SINE Alu 0 149 34 3 1231 538 236 7 59 chr5 84722408 84722543 -67814716 + B1_Mm SINE Alu 15 142 -5 3 1231 1223 292 46 34 chr5 84723231 84723645 -67813614 + MTD LTR MaLR 1 419 0 3 1231 369 289 48 21 chr5 84725127 84725272 -67811987 - Lx8 LINE L1 -588 7108 6960 3 1231 275 288 170 38 chr5 84725286 84725445 -67811814 - Lx8 LINE L1 -584 6889 6710 3 1231 879 172 59 54 chr5 84725684 84725887 -67811372 + RMER20B LTR ERVK 234 437 -190 3 1231 995 306 76 29 chr5 84726040 84726485 -67810774 - Lx8 LINE L1 -805 6668 6203 3 1231 266 286 0 0 chr5 84726485 84726548 -67810711 + (TATG)n Simple_repeat Simple_repeat 1 63 0 3 1231 654 49 0 0 chr5 84726615 84726697 -67810562 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 1231 253 352 54 27 chr5 84726729 84726913 -67810346 + Lx8 LINE L1 7104 7292 -181 3 1231 264 59 0 0 chr5 84727533 84727567 -67809692 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 1231 264 100 0 0 chr5 84729520 84729560 -67807699 + (CAGA)n Simple_repeat Simple_repeat 4 43 0 3 1231 573 181 6 127 chr5 84729897 84730055 -67807204 - ORR1C2 LTR MaLR -245 139 1 3 1231 1124 92 23 0 chr5 84731147 84731320 -67805939 + L1_Mus2 LINE L1 6390 6566 0 3 1231 3644 44 5 0 chr5 84731804 84732238 -67805021 - RLTR10C LTR ERVK 0 436 1 3 1231 621 0 0 0 chr5 84732549 84732618 -67804641 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 3 1231 24 53 0 0 chr5 84733760 84733798 -67803461 + AT_rich Low_complexity Low_complexity 1 38 0 3 1231 785 173 0 6 chr5 84733840 84733997 -67803262 + (CATATA)n Simple_repeat Simple_repeat 5 160 0 3 1231 347 271 117 17 chr5 84734128 84734248 -67803011 + B1_Mur3 SINE Alu 2 133 -16 3 1231 31 26 0 0 chr5 84734590 84734628 -67802631 + AT_rich Low_complexity Low_complexity 1 38 0 3 1231 21 82 0 0 chr5 84735341 84735390 -67801869 + AT_rich Low_complexity Low_complexity 1 49 0 3 1231 181 304 41 55 chr5 84735660 84735733 -67801526 - MIR3 SINE MIR -136 72 1 3 1231 226 287 62 25 chr5 84735944 84736105 -67801154 + L1M3 LINE L1 3916 4082 -2058 3 1231 474 120 0 0 chr5 84736180 84736255 -67801004 + (TA)n Simple_repeat Simple_repeat 1 75 0 3 1231 1312 269 78 8 chr5 84736261 84736647 -67800612 + Lx9 LINE L1 6350 6762 -882 3 1231 2134 204 131 35 chr5 84736657 84737398 -67799861 - RMER6C LTR ERVK -11 709 1 3 1231 1882 263 89 55 chr5 84737402 84738123 -67799136 + Lx9 LINE L1 6760 7504 -140 3 1231 485 319 65 46 chr5 84738910 84739127 -67798132 + MER34A1 LTR ERV1 14 234 -353 3 1231 6709 136 35 2 chr5 84739638 84740763 -67796496 - Lx LINE L1 -6 6648 5489 3 1231 344 300 19 57 chr5 84741946 84742052 -67795207 - PB1D10 SINE Alu -6 111 10 3 1231 23 68 0 0 chr5 84743666 84743710 -67793549 + AT_rich Low_complexity Low_complexity 1 44 0 3 1231 695 171 34 14 chr5 84743710 84743858 -67793401 - Lx4A LINE L1 -2 7056 6906 3 1231 243 322 10 72 chr5 84743967 84744064 -67793195 - RMER15 LTR ERVL -114 461 371 3 1231 267 316 36 79 chr5 84744128 84744293 -67792966 + Lx8 LINE L1 6590 6747 -726 3 1231 296 333 34 26 chr5 84744375 84744492 -67792767 - Lx8 LINE L1 -263 7210 7093 3 1231 243 253 171 51 chr5 84744645 84744803 -67792456 + MT2B2 LTR ERVL 64 240 -344 3 1231 1424 213 35 16 chr5 84744870 84745185 -67792074 + RMER6C LTR ERVK 370 690 0 3 1231 270 0 0 0 chr5 84745430 84745460 -67791799 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1231 1005 85 18 95 chr5 84745621 84745790 -67791469 + B2_Mm2 SINE B2 2 157 -38 3 1231 213 65 0 0 chr5 84745793 84745824 -67791435 + (CATA)n Simple_repeat Simple_repeat 2 32 0 3 1231 192 250 0 0 chr5 84746475 84746539 -67790720 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1231 285 367 27 13 chr5 84746551 84746700 -67790559 - RSINE1 SINE B4 -11 154 4 3 1231 280 263 199 38 chr5 84746934 84747120 -67790139 + MIRb SINE MIR 24 239 -29 3 1231 1448 158 89 77 chr5 84748037 84748441 -67788818 + RMER17C LTR ERVK 2 410 0 3 1231 548 95 12 0 chr5 84750121 84750205 -67787054 + (GA)n Simple_repeat Simple_repeat 2 86 0 3 1231 1121 118 0 6 chr5 84750205 84750384 -67786875 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 1231 656 296 39 48 chr5 84750629 84750657 -67786602 - B3 SINE B2 -11 205 181 3 1231 543 43 0 0 chr5 84750657 84750727 -67786532 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1231 656 296 39 48 chr5 84750727 84750904 -67786355 - B3 SINE B2 -36 180 2 3 1231 23 0 0 0 chr5 84751335 84751358 -67785901 + AT_rich Low_complexity Low_complexity 1 23 0 3 1231 532 299 38 19 chr5 84751376 84751536 -67785723 + RSINE1 SINE B4 3 165 0 3 1231 569 302 82 27 chr5 84751794 84751978 -67785281 - B3 SINE B2 0 216 23 3 1231 26 30 0 0 chr5 84753131 84753164 -67784095 + AT_rich Low_complexity Low_complexity 1 33 0 3 1231 238 257 0 22 chr5 84754525 84754664 -67782595 + (CATA)n Simple_repeat Simple_repeat 4 139 0 3 1231 1608 218 47 34 chr5 84756793 84757201 -67780058 + MTC LTR MaLR 1 413 -8 4 1231 23 0 0 0 chr5 84757211 84757234 -67780025 + AT_rich Low_complexity Low_complexity 1 23 0 4 1231 450 0 0 0 chr5 84757234 84757284 -67779975 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1231 609 301 56 0 chr5 84757863 84758059 -67779200 + B3 SINE B2 1 207 -9 4 1231 697 280 95 0 chr5 84758233 84758401 -67778858 - B3 SINE B2 -20 196 13 4 1231 29 70 0 0 chr5 84758744 84758801 -67778458 + AT_rich Low_complexity Low_complexity 1 57 0 4 1231 232 279 33 0 chr5 84761111 84761172 -67776087 - tRNA-Ala-GCY_ tRNA tRNA -9 66 4 4 1231 21 0 0 0 chr5 84761262 84761283 -67775976 + AT_rich Low_complexity Low_complexity 1 21 0 4 1231 2021 142 19 29 chr5 84761337 84761749 -67775510 + RMER17C LTR ERVK 3 410 0 4 1231 1253 277 102 16 chr5 84761853 84762363 -67774896 + Lx7 LINE L1 6754 7307 -389 4 1231 831 93 0 0 chr5 84762365 84762483 -67774776 + (TTCCC)n Simple_repeat Simple_repeat 3 120 0 4 1231 414 213 0 0 chr5 84762489 84762583 -67774676 + CT-rich Low_complexity Low_complexity 3 96 0 4 1231 21 0 0 0 chr5 84763352 84763373 -67773886 + AT_rich Low_complexity Low_complexity 1 21 0 4 1231 21 82 0 0 chr5 84764089 84764138 -67773121 + AT_rich Low_complexity Low_complexity 1 49 0 4 1231 252 0 0 0 chr5 84764558 84764586 -67772673 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 4 1231 211 224 0 0 chr5 84764764 84764813 -67772446 + A-rich Low_complexity Low_complexity 1 49 0 4 1231 478 143 0 28 chr5 84765438 84765546 -67771713 - Lx LINE L1 0 6654 6550 4 1231 5706 43 0 0 chr5 84765546 84766235 -67771024 - L1Md_T LINE L1 0 6582 5894 4 1231 2260 176 74 71 chr5 84766235 84766865 -67770394 + Lx LINE L1 5718 6349 -305 4 1231 1818 73 57 0 chr5 84767655 84767901 -67769358 + L1_Mus2 LINE L1 6307 6566 0 4 1231 296 343 21 14 chr5 84768259 84768401 -67768858 - RSINE1 SINE B4 -19 146 4 4 1231 22 56 0 0 chr5 84768410 84768446 -67768813 + AT_rich Low_complexity Low_complexity 1 36 0 4 1231 30 0 0 0 chr5 84768594 84768624 -67768635 + AT_rich Low_complexity Low_complexity 1 30 0 4 1231 2479 77 6 6 chr5 84768630 84768968 -67768291 - L1Md_F2 LINE L1 -13 6569 6232 4 1231 198 143 0 0 chr5 84769139 84769174 -67768085 + (TATG)n Simple_repeat Simple_repeat 2 36 0 4 1231 261 57 0 0 chr5 84769546 84769581 -67767678 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 4 1231 1900 218 37 2 chr5 84770019 84770424 -67766835 - MTC LTR MaLR 0 421 3 4 1231 532 375 19 19 chr5 84770913 84771125 -67766134 - B3 SINE B2 -3 213 2 4 1231 2868 74 15 2 chr5 84771956 84772351 -67764908 - L1_Mus4 LINE L1 -490 6146 5747 4 1231 1349 49 0 0 chr5 84772334 84772498 -67764761 - L1_Mus4 LINE L1 -341 5542 5379 4 1231 3891 88 7 11 chr5 84772498 84773049 -67764210 + L1_Mus4 LINE L1 6088 6636 0 4 1231 3457 125 23 12 chr5 84773089 84773648 -67763611 - Lx3C LINE L1 -9 6967 6403 4 1231 225 291 18 35 chr5 84773679 84773736 -67763523 + ID SINE ID 2 57 -167 4 1231 686 337 73 29 chr5 84774444 84774932 -67762327 + L1MA4 LINE L1 5516 6024 -279 4 1231 216 97 0 0 chr5 84774932 84774963 -67762296 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1231 414 0 0 0 chr5 84776134 84776180 -67761079 + (CAA)n Simple_repeat Simple_repeat 2 47 0 4 1231 465 76 0 0 chr5 84776434 84776500 -67760759 + (TG)n Simple_repeat Simple_repeat 2 67 0 4 1231 511 328 32 28 chr5 84776520 84776771 -67760488 - B4A SINE B4 -39 253 2 4 1231 30 0 0 0 chr5 84777826 84777856 -67759403 + AT_rich Low_complexity Low_complexity 1 30 0 4 1231 25 31 0 0 chr5 84777970 84778002 -67759257 + AT_rich Low_complexity Low_complexity 1 32 0 4 1231 246 174 0 0 chr5 84778060 84778106 -67759153 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1231 338 266 193 17 chr5 84778185 84778418 -67758841 + L1M4b LINE L1 1948 2221 -5113 4 1231 251 206 15 0 chr5 84778503 84778571 -67758688 + L1M4b LINE L1 6189 6257 -962 4 1231 1730 154 46 14 chr5 84778574 84778922 -67758337 - RLTR15 LTR ERVK 0 359 1 4 1231 339 331 12 98 chr5 84779217 84779381 -67757878 + RSINE1 SINE B4 16 165 0 4 1231 226 307 141 9 chr5 84779417 84779637 -67757622 + L1M4b LINE L1 6550 6798 -304 4 1231 492 147 58 10 chr5 84779660 84779763 -67757496 + URR1B DNA MER1_type 116 223 -2 4 1231 351 0 0 0 chr5 84780705 84780744 -67756515 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1231 396 0 0 0 chr5 84781553 84781597 -67755662 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1231 270 0 0 0 chr5 84781597 84781626 -67755633 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1231 22 0 0 0 chr5 84781731 84781753 -67755506 + AT_rich Low_complexity Low_complexity 1 22 0 4 1231 450 79 0 0 chr5 84782053 84782116 -67755143 + (TTG)n Simple_repeat Simple_repeat 2 64 0 4 1231 1799 178 138 8 chr5 84782116 84782507 -67754752 + RLTR41 LTR ERV1 3 444 -2 4 1231 267 227 0 15 chr5 84782509 84782576 -67754683 + (TTG)n Simple_repeat Simple_repeat 2 67 0 4 1231 21 57 0 0 chr5 84783833 84783868 -67753391 + AT_rich Low_complexity Low_complexity 1 35 0 4 1231 189 0 0 0 chr5 84785830 84785851 -67751408 + (CTAAA)n Simple_repeat Simple_repeat 3 23 0 4 1231 21 36 0 0 chr5 84786725 84786753 -67750506 + AT_rich Low_complexity Low_complexity 1 28 0 4 1231 23 54 0 0 chr5 84787614 84787651 -67749608 + AT_rich Low_complexity Low_complexity 1 37 0 4 1231 1631 269 68 11 chr5 84787788 84788317 -67748942 + Lx9 LINE L1 7051 7609 -35 4 1231 283 349 141 16 chr5 84788895 84789087 -67748172 - B3 SINE B2 0 216 1 4 1231 1190 260 44 22 chr5 84789599 84789961 -67747298 + ORR1D1 LTR MaLR 2 371 -3 4 1231 21 36 0 0 chr5 84790475 84790503 -67746756 + AT_rich Low_complexity Low_complexity 1 28 0 4 1231 477 167 0 0 chr5 84791012 84791138 -67746121 + CT-rich Low_complexity Low_complexity 1 126 0 4 1231 2561 26 13 3 chr5 84792255 84792569 -67744690 - L1Md_F3 LINE L1 -1 6583 6267 4 1231 237 33 0 0 chr5 84792590 84792620 -67744639 + (TTG)n Simple_repeat Simple_repeat 2 31 0 4 1231 235 271 0 0 chr5 84792770 84792829 -67744430 + (CA)n Simple_repeat Simple_repeat 2 60 0 4 1231 480 162 7 13 chr5 84792830 84792980 -67744279 + GA-rich Low_complexity Low_complexity 2 150 0 4 1231 184 250 0 0 chr5 84794842 84794882 -67742377 + L3 LINE CR1 3540 3579 -910 4 1231 3890 68 27 2 chr5 84796626 84797145 -67740114 + L1_Mus1 LINE L1 6035 6566 -1 4 1231 41 0 0 0 chr5 84797145 84797186 -67740073 + AT_rich Low_complexity Low_complexity 1 41 0 4 1231 207 0 0 0 chr5 84798171 84798194 -67739065 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1231 1047 97 0 27 chr5 84798194 84798331 -67738928 - B1_Mus2 SINE Alu -9 138 2 4 1231 3697 150 106 7 chr5 84798887 84799578 -67737681 - Lx LINE L1 -4 6650 5892 4 1231 2419 135 0 24 chr5 84799575 84799986 -67737273 + Lx2 LINE L1 4332 4732 -1145 4 1231 3847 119 20 6 chr5 84799983 84800671 -67736588 + Lx2 LINE L1 5224 5920 -1077 4 153 37799 31 1 1 chr5 84800737 84807814 -67729445 - L1Md_T LINE L1 0 6585 1 4 1232 1696 214 11 3 chr5 84807995 84808346 -67728913 - Lx7 LINE L1 -510 7186 6833 4 1232 314 247 48 24 chr5 84808381 84808464 -67728795 - B4A SINE B4 -204 88 4 4 1232 1088 56 7 7 chr5 84809592 84809735 -67727524 - L1_Mus2 LINE L1 -170 6396 6254 4 1232 336 358 93 39 chr5 84809978 84810289 -67726970 - L1M4 LINE L1 -5602 940 613 4 1232 285 94 0 0 chr5 84810376 84810435 -67726824 + L1_Mus2 LINE L1 6520 6581 -1 4 1232 7008 105 22 6 chr5 84810712 84811841 -67725418 - Lx LINE L1 -2 6652 5505 4 1232 2172 143 154 2 chr5 84811832 84811951 -67725308 + L1_Mm LINE L1 5095 5238 -645 4 1232 2967 97 2 5 chr5 84811951 84812365 -67724894 + L1_Mus2 LINE L1 6153 6565 -1 4 1232 2172 143 154 2 chr5 84812365 84812679 -67724580 + L1_Mm LINE L1 5239 5593 -290 4 1232 516 45 0 0 chr5 84812951 84813018 -67724241 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1232 615 116 0 0 chr5 84813018 84813130 -67724129 + (GA)n Simple_repeat Simple_repeat 1 112 0 4 1232 1305 249 96 13 chr5 84813444 84813831 -67723428 - MTD LTR MaLR 0 419 1 4 1232 1027 89 7 14 chr5 84814077 84814214 -67723045 + B1_Mm SINE Alu 1 138 -9 4 1232 234 0 0 0 chr5 84814214 84814240 -67723019 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4 1232 49 60 0 0 chr5 84814292 84814376 -67722883 + AT_rich Low_complexity Low_complexity 1 84 0 4 1232 274 147 29 0 chr5 84814518 84814586 -67722673 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 1232 29 28 0 0 chr5 84814637 84814673 -67722586 + AT_rich Low_complexity Low_complexity 1 36 0 4 1232 552 42 0 0 chr5 84814945 84815016 -67722243 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1232 1159 68 0 0 chr5 84816325 84816471 -67720788 + B1_Mus2 SINE Alu 2 147 0 4 1232 204 40 0 0 chr5 84816471 84816496 -67720763 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1232 225 0 0 0 chr5 84816676 84816701 -67720558 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1232 3732 117 14 0 chr5 84817273 84817827 -67719432 + Lx3B LINE L1 6409 6970 -3 4 1232 23 33 0 0 chr5 84817836 84817866 -67719393 + AT_rich Low_complexity Low_complexity 1 30 0 4 1232 367 262 37 16 chr5 84818905 84819018 -67718241 + MTD LTR MaLR 206 327 -73 4 1232 361 333 60 76 chr5 84819288 84819473 -67717786 + B3A SINE B2 1 182 -16 4 1232 378 143 0 0 chr5 84819685 84819748 -67717511 + (T)n Simple_repeat Simple_repeat 1 63 0 4 1232 405 0 0 0 chr5 84820195 84820240 -67717019 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1232 264 100 0 0 chr5 84820872 84820912 -67716347 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1232 303 308 0 25 chr5 84820957 84821037 -67716222 - B3A SINE B2 -116 82 5 4 1232 24 0 0 0 chr5 84821322 84821346 -67715913 + AT_rich Low_complexity Low_complexity 1 24 0 5 1232 1062 104 0 0 chr5 84822146 84822309 -67714950 - L1_Mur1 LINE L1 -2170 3716 3554 5 1232 499 261 45 7 chr5 84823048 84823202 -67714057 - Lx7 LINE L1 -1935 5761 5602 5 1232 564 121 0 0 chr5 84823450 84823541 -67713718 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 5 1232 413 286 72 16 chr5 84823796 84824023 -67713236 - L1M2 LINE L1 -1107 5039 4791 5 1232 1041 265 165 91 chr5 84825301 84825732 -67711527 + MT2A LTR ERVL 1 463 -70 5 1232 229 89 44 0 chr5 84825733 84825778 -67711481 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1232 590 324 14 0 chr5 84825806 84825954 -67711305 - B3A SINE B2 -48 150 1 5 1232 431 337 41 31 chr5 84826728 84826924 -67710335 - MIRb SINE MIR -57 211 14 5 1232 630 327 80 26 chr5 84827099 84827370 -67709889 + B4 SINE B4 5 288 -4 5 1232 27 29 0 0 chr5 84827847 84827881 -67709378 + AT_rich Low_complexity Low_complexity 1 34 0 5 1232 1700 185 95 6 chr5 84828294 84828631 -67708628 + ORR1B2 LTR MaLR 1 367 0 5 1232 5860 198 83 6 chr5 84828631 84830032 -67707227 + ORR1B2-int LTR MaLR 1 1509 0 5 1232 465 231 157 0 chr5 84830032 84830166 -67707093 + ORR1B2 LTR MaLR 1 155 -212 5 1232 294 221 0 0 chr5 84830164 84830232 -67707027 + ORR1B2 LTR MaLR 327 394 0 5 1232 812 289 43 8 chr5 84830234 84830468 -67706791 + MTEb LTR MaLR 1 242 -137 5 1232 180 217 0 0 chr5 84831668 84831714 -67705545 + GA-rich Low_complexity Low_complexity 2 47 0 5 1232 1142 106 73 0 chr5 84832258 84832437 -67704822 + B2_Mm1t SINE B2 2 193 0 5 1232 238 295 165 42 chr5 84834064 84834259 -67703000 - MIR SINE MIR -29 239 11 5 1232 22 0 0 0 chr5 84834316 84834338 -67702921 + AT_rich Low_complexity Low_complexity 1 22 0 5 1232 23 0 0 0 chr5 84834494 84834517 -67702742 + AT_rich Low_complexity Low_complexity 1 23 0 5 1232 193 357 69 31 chr5 84835131 84835261 -67701998 + MIR SINE MIR 18 152 -110 5 1232 270 221 21 10 chr5 84836519 84836615 -67700644 + GA-rich Low_complexity Low_complexity 3 99 0 5 1232 216 349 52 37 chr5 84836789 84836923 -67700336 - MIR SINE MIR -62 200 65 5 1232 793 116 52 0 chr5 84837117 84837272 -67699987 + Lx2A1 LINE L1 6839 7001 -7 5 1232 675 0 0 0 chr5 84837274 84837349 -67699910 + (GA)n Simple_repeat Simple_repeat 2 76 0 5 1232 22 56 0 0 chr5 84839286 84839322 -67697937 + AT_rich Low_complexity Low_complexity 1 36 0 5 1232 576 42 0 0 chr5 84839929 84840000 -67697259 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 5 1232 475 104 0 0 chr5 84840000 84840067 -67697192 - B1_Mm SINE Alu -9 138 72 5 1232 188 211 0 0 chr5 84841706 84841744 -67695515 + MIR3 SINE MIR 163 200 -8 5 1232 274 278 14 0 chr5 84843658 84843730 -67693529 + C-rich Low_complexity Low_complexity 2 74 0 5 1232 234 0 0 0 chr5 84843809 84843835 -67693424 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1232 180 111 0 0 chr5 84845862 84845889 -67691370 + (TTC)n Simple_repeat Simple_repeat 2 28 0 5 1232 353 70 18 0 chr5 84846003 84846060 -67691199 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1232 261 0 0 0 chr5 84846367 84846396 -67690863 + (CTCG)n Simple_repeat Simple_repeat 2 30 0 5 1232 387 0 0 0 chr5 84847378 84847421 -67689838 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1232 411 92 0 0 chr5 84848048 84848113 -67689146 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1232 197 335 185 11 chr5 84849436 84849620 -67687639 - MIR SINE MIR -13 249 34 5 1232 369 0 0 0 chr5 84849880 84849921 -67687338 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1232 380 235 74 0 chr5 84850489 84850570 -67686689 + B3A SINE B2 3 89 -109 5 1232 2515 163 122 8 chr5 84852590 84853091 -67684168 + RMER2 LTR ERV1 10 567 0 5 1232 2390 101 3 0 chr5 84853350 84853676 -67683583 + ORR1A2 LTR MaLR 1 327 0 5 1232 305 362 60 32 chr5 84854153 84854370 -67682889 - L1MD2 LINE L1 -1 6358 6136 5 1232 817 290 52 7 chr5 84854478 84854830 -67682429 - L1MD2 LINE L1 -1789 5996 5630 5 1232 216 0 0 0 chr5 84854831 84854855 -67682404 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1232 217 343 14 41 chr5 84854951 84855024 -67682235 + ID SINE ID 1 71 -153 5 1232 618 131 0 0 chr5 84855571 84855670 -67681589 + (GAAA)n Simple_repeat Simple_repeat 1 99 0 5 1232 256 77 39 0 chr5 84856238 84856290 -67680969 + (TTTTTG)n Simple_repeat Simple_repeat 3 56 0 5 1232 274 216 19 0 chr5 84856484 84856638 -67680621 + GA-rich Low_complexity Low_complexity 1 156 0 5 1232 963 156 0 0 chr5 84857168 84857347 -67679912 + (CCTG)n Simple_repeat Simple_repeat 1 179 0 5 1232 393 45 44 15 chr5 84857391 84857459 -67679800 + (TATG)n Simple_repeat Simple_repeat 1 70 0 5 1232 241 350 59 53 chr5 84857564 84857733 -67679526 - B4A SINE B4 -118 174 5 5 1232 522 46 0 0 chr5 84858296 84858361 -67678898 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1232 3978 265 74 38 chr5 84858481 84859821 -67677438 + Lx7 LINE L1 6295 7682 -14 5 1232 2236 176 76 47 chr5 84859848 84860315 -67676944 - RLTR11A2 LTR ERVK 0 527 45 5 1232 3624 199 152 4 chr5 84860315 84861103 -67676156 - RMER13B LTR ERVK -3 905 1 5 1232 2236 176 76 47 chr5 84861103 84861147 -67676112 - RLTR11A2 LTR ERVK -483 44 1 5 1232 36 40 0 0 chr5 84861262 84861312 -67675947 + AT_rich Low_complexity Low_complexity 1 50 0 5 1232 243 0 0 0 chr5 84861645 84861672 -67675587 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1232 988 254 30 0 chr5 84862069 84862337 -67674922 - Lx9 LINE L1 -239 7405 7130 5 1232 25 0 0 0 chr5 84862392 84862417 -67674842 + AT_rich Low_complexity Low_complexity 1 25 0 5 1232 2190 174 3 0 chr5 84862417 84862780 -67674479 - L1_Mur2 LINE L1 -63 5814 5451 5 1232 6694 111 13 0 chr5 84862782 84863799 -67673460 - L1_Mur1 LINE L1 -2921 2965 1936 5 1232 230 191 116 103 chr5 84864515 84864661 -67672598 + Charlie5 DNA MER1_type 2131 2278 -346 5 1232 2231 49 31 0 chr5 84864810 84865097 -67672162 - L1Md_F2 LINE L1 0 6582 6287 5 1232 4841 39 5 0 chr5 84865099 84865750 -67671509 + L1Md_F2 LINE L1 5519 6171 -411 5 1232 24 0 0 0 chr5 84866066 84866090 -67671169 + AT_rich Low_complexity Low_complexity 1 24 0 5 1232 25 51 0 0 chr5 84866653 84866692 -67670567 + AT_rich Low_complexity Low_complexity 1 39 0 5 1232 330 45 0 0 chr5 84867320 84867364 -67669895 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1232 455 73 15 0 chr5 84867529 84867597 -67669662 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1232 25 0 0 0 chr5 84868457 84868482 -67668777 + AT_rich Low_complexity Low_complexity 1 25 0 5 1232 270 56 0 0 chr5 84868538 84868574 -67668685 + (TTA)n Simple_repeat Simple_repeat 2 37 0 5 1232 741 190 21 0 chr5 84868578 84868720 -67668539 - B1_Mur4 SINE Alu -1 149 5 5 1232 222 193 78 78 chr5 84868949 84869039 -67668220 + L2c LINE L2 3298 3387 0 5 1232 1325 228 82 32 chr5 84869753 84869844 -67667415 + Lx9 LINE L1 7221 7310 -334 5 1232 498 17 0 0 chr5 84869844 84869903 -67667356 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1232 1325 228 82 32 chr5 84869903 84870215 -67667044 + Lx9 LINE L1 7311 7644 0 5 1232 30 0 0 0 chr5 84870334 84870364 -67666895 + AT_rich Low_complexity Low_complexity 1 30 0 5 1232 524 15 0 15 chr5 84870449 84870515 -67666744 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 5 1232 222 186 23 11 chr5 84870544 84870631 -67666628 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 1232 386 342 78 58 chr5 84870758 84871105 -67666154 - Lx5 LINE L1 -218 6832 6479 5 1232 26 30 0 0 chr5 84872301 84872334 -67664925 + AT_rich Low_complexity Low_complexity 1 33 0 5 1232 3116 271 133 57 chr5 84873118 84874004 -67663255 - L1_Mur3 LINE L1 -954 4932 4021 5 1232 442 70 14 14 chr5 84874004 84874076 -67663183 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1232 3182 208 47 4 chr5 84874076 84874862 -67662397 - L1_Mur3 LINE L1 -1866 4020 3125 5 1232 2069 219 237 24 chr5 84874862 84875117 -67662142 + Lx6 LINE L1 4961 5217 -660 5 1232 546 43 0 0 chr5 84875117 84875186 -67662073 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1232 243 88 0 0 chr5 84875186 84875219 -67662040 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 5 1232 2917 209 59 17 chr5 84875219 84876176 -67661083 + Lx6 LINE L1 5218 6371 -1089 5 1232 2020 171 20 3 chr5 84876185 84876531 -67660728 + ORR1B1 LTR MaLR 1 352 -42 5 1232 1034 291 96 43 chr5 84876531 84877174 -67660085 - RMER19B LTR ERVK 0 902 32 5 1232 4217 250 41 2 chr5 84877174 84878141 -67659118 + Lx6 LINE L1 6437 7441 -19 5 1232 1808 170 89 4 chr5 84878198 84878723 -67658536 + Lx3B LINE L1 6401 6970 -3 5 1232 1358 242 26 81 chr5 84878749 84879171 -67658088 + Lx9 LINE L1 7024 7422 -222 5 1232 494 57 0 14 chr5 84879173 84879244 -67658015 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1232 1376 235 48 39 chr5 84879248 84879584 -67657675 - RMER19C LTR ERVK -2 609 271 5 1232 1427 212 163 5 chr5 84879585 84879954 -67657305 - Lx2 LINE L1 -267 6730 6304 5 1232 638 248 34 5 chr5 84879955 84880162 -67657097 - Lx2 LINE L1 -824 6176 5964 5 1232 875 255 59 16 chr5 84880148 84880403 -67656856 + Lx3C LINE L1 6709 6974 -2 5 1232 1117 66 0 0 chr5 84880413 84880550 -67656709 + B1_Mm SINE Alu 2 138 -9 5 1232 279 0 0 0 chr5 84880550 84880581 -67656678 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1232 815 202 130 2 chr5 84880603 84880818 -67656441 - RMER19C LTR ERVK -332 279 1 5 1232 467 226 29 0 chr5 84880818 84880955 -67656304 + Lx9 LINE L1 7502 7642 -2 5 1232 363 184 42 34 chr5 84881155 84881273 -67655986 + Lx9 LINE L1 7526 7644 0 5 1232 2865 84 16 3 chr5 84881941 84882321 -67654938 + IAPEY_LTR LTR ERVK 1 385 0 5 1232 396 0 0 0 chr5 84882473 84882517 -67654742 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 5 1232 279 0 0 0 chr5 84883318 84883349 -67653910 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1232 696 311 52 0 chr5 84883749 84883961 -67653298 - MER58A DNA MER1_type 0 224 2 5 1232 543 31 0 0 chr5 84884977 84885042 -67652217 + (GAAAA)n Simple_repeat Simple_repeat 2 66 0 5 1232 600 162 0 0 chr5 84885974 84886122 -67651137 + (TA)n Simple_repeat Simple_repeat 1 148 0 5 1232 1821 318 92 30 chr5 84886196 84887066 -67650193 + Lx8 LINE L1 6267 7190 -283 5 1232 21 0 0 0 chr5 84887616 84887637 -67649622 + AT_rich Low_complexity Low_complexity 1 21 0 5 1232 823 309 38 105 chr5 84888082 84888473 -67648786 + MTE2a LTR MaLR 1 365 -14 5 1232 180 0 0 0 chr5 84888602 84888622 -67648637 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1232 2714 109 0 20 chr5 84888622 84889016 -67648243 - MTB LTR MaLR -14 386 1 6 1232 419 316 41 0 chr5 84889075 84889295 -67647964 - L1P5 LINE L1 -639 5661 5428 6 1232 303 371 71 81 chr5 84889515 84889823 -67647436 + MLT2B3 LTR ERVL 250 554 0 6 1232 3275 175 41 14 chr5 84889823 84890462 -67646797 + Lx4B LINE L1 5800 6455 -603 6 1232 721 144 0 8 chr5 84890455 84890574 -67646685 - Lx4B LINE L1 -1109 5949 5832 6 1232 1087 222 14 0 chr5 84890708 84890924 -67646335 - URR1B DNA MER1_type 0 225 7 6 1232 322 289 30 45 chr5 84891970 84892104 -67645155 + L1M5 LINE L1 4934 5065 -1081 6 1232 260 295 112 21 chr5 84892111 84892298 -67644961 + L1M5 LINE L1 5404 5607 -557 6 1232 6128 78 75 2 chr5 84892651 84893517 -67643742 - RLTR13B3 LTR ERVK 0 929 1 6 1232 338 296 56 0 chr5 84894079 84894204 -67643055 + MIRb SINE MIR 45 176 -92 6 1232 954 115 12 6 chr5 84894411 84894577 -67642682 + (GA)n Simple_repeat Simple_repeat 2 168 0 6 1232 206 220 0 39 chr5 84894609 84894661 -67642598 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 6 1232 22 0 0 0 chr5 84894768 84894790 -67642469 + AT_rich Low_complexity Low_complexity 1 22 0 6 1232 387 326 62 26 chr5 84894980 84895172 -67642087 - B3 SINE B2 -1 215 17 6 1232 1709 203 35 19 chr5 84895695 84896066 -67641193 + Lx5 LINE L1 6670 7046 -4 6 1232 32555 76 11 9 chr5 84896582 84897334 -67639925 - L1Md_F3 LINE L1 -582 6002 5249 6 1232 486 0 0 0 chr5 84897334 84897388 -67639871 + (TA)n Simple_repeat Simple_repeat 2 55 0 6 1232 32555 92 19 21 chr5 84897388 84897685 -67639574 - L1Md_F3 LINE L1 -635 5248 4949 6 1232 226 183 46 77 chr5 84897685 84897750 -67639509 + RMER20A LTR ERVK 186 248 -268 6 1232 32555 92 19 21 chr5 84897750 84902230 -67635029 - L1Md_F3 LINE L1 -635 4948 422 6 1232 180 97 0 0 chr5 84902321 84902352 -67634907 + (TA)n Simple_repeat Simple_repeat 1 31 0 6 1232 27 62 0 0 chr5 84902742 84902790 -67634469 + AT_rich Low_complexity Low_complexity 1 48 0 6 1232 446 299 9 6 chr5 84902900 84903105 -67634154 + Lx7 LINE L1 5530 5739 -1957 6 1232 426 232 71 8 chr5 84903141 84903267 -67633992 + URR1B DNA MER1_type 59 192 -33 6 1232 502 311 24 22 chr5 84903287 84903632 -67633627 + Lx7 LINE L1 5717 6095 -1601 6 1232 415 162 0 0 chr5 84903636 84903704 -67633555 + ORR1C2 LTR MaLR 1 68 -316 6 1232 266 0 29 0 chr5 84904066 84904100 -67633159 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 6 1232 231 125 0 59 chr5 84904100 84904151 -67633108 + L1_Mus2 LINE L1 6317 6364 -202 6 1232 32 57 0 0 chr5 84904902 84904955 -67632304 + AT_rich Low_complexity Low_complexity 1 53 0 6 1232 426 20 0 0 chr5 84905426 84905477 -67631782 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1232 5564 83 0 1 chr5 84905933 84906694 -67630565 - L1Md_F2 LINE L1 -824 5059 4300 6 1232 3898 63 18 8 chr5 84906692 84906912 -67630347 + L1Md_F2 LINE L1 5069 5284 -599 6 1232 4043 54 2 0 chr5 84906912 84907412 -67629847 + L1Md_T LINE L1 6082 6582 0 6 1232 3898 63 18 8 chr5 84907412 84907703 -67629556 + L1Md_F2 LINE L1 5285 5583 -300 6 1232 7306 80 5 12 chr5 84907704 84908693 -67628566 + L1Md_F2 LINE L1 5587 6568 -14 6 1232 2558 184 157 35 chr5 84908821 84909433 -67627826 - RMER6C LTR ERVK -4 686 1 6 1232 324 327 92 89 chr5 84909933 84910259 -67627000 + ORR1E LTR MaLR 1 327 -32 6 1232 1033 119 23 0 chr5 84910568 84910744 -67626515 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1232 256 164 15 15 chr5 84910744 84910812 -67626447 + GA-rich Low_complexity Low_complexity 1 68 0 6 1232 528 353 10 0 chr5 84911097 84911301 -67625958 - B3 SINE B2 -10 206 1 6 1232 744 291 30 5 chr5 84911405 84911605 -67625654 + B3 SINE B2 6 210 -6 6 1232 25 51 0 0 chr5 84911625 84911664 -67625595 + AT_rich Low_complexity Low_complexity 1 39 0 6 1232 1197 220 73 10 chr5 84911771 84912074 -67625185 - Lx9 LINE L1 -312 7332 7011 6 1232 359 91 0 0 chr5 84912293 84912348 -67624911 + ORR1A2 LTR MaLR 1 55 -272 6 1232 599 83 0 0 chr5 84912345 84912429 -67624830 + ORR1A2 LTR MaLR 244 327 0 6 1232 5371 207 115 33 chr5 84912429 84912775 -67624484 + ORR1A2-int LTR MaLR 1 392 -1400 6 1232 333 0 0 0 chr5 84912775 84912812 -67624447 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1232 5371 207 115 33 chr5 84912812 84912855 -67624404 + ORR1A2-int LTR MaLR 393 410 -1382 6 1232 5569 124 5 11 chr5 84912855 84913710 -67623549 - Lx3A LINE L1 -2 6979 6130 6 1232 5371 207 115 33 chr5 84913710 84914689 -67622570 + ORR1A2-int LTR MaLR 411 1483 -309 6 1232 2130 241 96 5 chr5 84914696 84915281 -67621978 + Lx9 LINE L1 6368 7005 -639 6 1232 21 36 0 0 chr5 84915431 84915459 -67621800 + AT_rich Low_complexity Low_complexity 1 28 0 6 1232 402 57 0 0 chr5 84916126 84916179 -67621080 + (T)n Simple_repeat Simple_repeat 1 53 0 6 1232 1555 325 91 29 chr5 84916185 84917118 -67620141 - MER70-int LTR ERVL -2412 2611 1621 6 1232 376 268 55 84 chr5 84917426 84917699 -67619560 - RLTR15 LTR ERVK -18 341 77 6 1232 420 37 0 0 chr5 84917807 84917861 -67619398 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 6 1232 2876 135 7 9 chr5 84917899 84918362 -67618897 - Lx3C LINE L1 -583 6393 5932 6 1232 517 231 232 23 chr5 84918598 84918775 -67618484 + B3 SINE B2 3 216 0 6 1232 340 333 14 69 chr5 84919066 84919211 -67618048 + MLT2B3 LTR ERVL 8 144 -410 6 1232 453 36 0 0 chr5 84920298 84920353 -67616906 + (GA)n Simple_repeat Simple_repeat 1 55 0 6 1232 471 35 0 0 chr5 84920353 84920410 -67616849 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 6 1232 4493 111 12 87 chr5 84921932 84922744 -67614515 - RMER17A LTR ERVK 0 751 1 6 1232 276 401 57 67 chr5 84922870 84923153 -67614106 - B4A SINE B4 -11 281 2 6 1232 441 0 0 0 chr5 84923717 84923766 -67613493 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1232 1411 149 202 0 chr5 84924644 84925035 -67612224 - Lx2 LINE L1 -17 6983 6432 6 1232 23 0 0 0 chr5 84925616 84925639 -67611620 + AT_rich Low_complexity Low_complexity 1 23 0 6 1232 1118 117 6 0 chr5 84926476 84926655 -67610604 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1232 445 187 0 45 chr5 84926716 84926828 -67610431 - Lx7 LINE L1 -395 7301 7195 6 1232 237 213 0 0 chr5 84926867 84926914 -67610345 + Lx7 LINE L1 7024 7070 -626 6 1232 617 69 11 0 chr5 84927269 84927356 -67609903 + (TTTTC)n Simple_repeat Simple_repeat 4 91 0 6 1232 22 0 0 0 chr5 84927393 84927415 -67609844 + AT_rich Low_complexity Low_complexity 1 22 0 6 1232 386 299 12 106 chr5 84927453 84927614 -67609645 + B4A SINE B4 147 292 0 6 1232 378 0 0 0 chr5 84927656 84927698 -67609561 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 6 1232 511 318 26 7 chr5 84927918 84928070 -67609189 - U1 snRNA snRNA -10 155 1 6 1232 699 112 0 0 chr5 84928316 84928423 -67608836 + (TA)n Simple_repeat Simple_repeat 1 107 0 6 1232 3432 237 57 51 chr5 84929785 84930912 -67606347 + L1_Mur3 LINE L1 4685 5818 -62 6 1232 2066 205 10 15 chr5 84930911 84931312 -67605947 + Lx7 LINE L1 6717 7115 -581 6 1232 198 0 0 0 chr5 84931343 84931365 -67605894 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 6 1232 3555 95 88 9 chr5 84931366 84931926 -67605333 - Lx3_Mus LINE L1 -19 6990 6387 6 1232 8066 165 3 70 chr5 84931926 84932367 -67604892 - L1_Mur2 LINE L1 -544 5333 4905 6 1232 3753 32 0 0 chr5 84932367 84932807 -67604452 + L1Md_T LINE L1 6143 6582 0 6 1232 8066 165 3 70 chr5 84932807 84934099 -67603160 - L1_Mur2 LINE L1 -973 4904 3716 6 1232 1234 157 0 145 chr5 84934101 84934452 -67602807 + L1_Mur2 LINE L1 3422 3721 -2156 6 1233 582 290 22 0 chr5 84936944 84937082 -67600177 + B1_Mur1 SINE Alu 9 149 0 6 1233 25 31 0 0 chr5 84937082 84937114 -67600145 + AT_rich Low_complexity Low_complexity 1 32 0 6 1233 1705 273 83 35 chr5 84938970 84939510 -67597749 + RMER1B Other Other 1 589 -477 6 1233 1445 197 66 0 chr5 84939512 84939816 -67597443 - RLTR12A LTR ERVK -244 324 1 6 1233 1860 191 30 95 chr5 84939816 84940280 -67596979 + RMER1B Other Other 628 1061 -5 6 1233 27 49 0 0 chr5 84941137 84941178 -67596081 + AT_rich Low_complexity Low_complexity 1 41 0 6 1233 351 0 0 0 chr5 84941373 84941412 -67595847 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1233 373 76 116 43 chr5 84941676 84941745 -67595514 + Lx2 LINE L1 6360 6433 -564 6 1233 514 39 13 13 chr5 84941879 84941957 -67595302 + (TTTTG)n Simple_repeat Simple_repeat 2 79 0 6 1233 1067 67 0 7 chr5 84941958 84942094 -67595165 - B1_Mm SINE Alu -12 135 1 6 1233 358 277 167 33 chr5 84942187 84942523 -67594736 - L1M3 LINE L1 -2191 3949 3569 6 1233 789 346 44 7 chr5 84942520 84942948 -67594311 - Lx8 LINE L1 -733 6740 6297 6 1233 563 309 6 27 chr5 84943028 84943211 -67594048 + B3A SINE B2 4 182 -16 6 1233 8758 14 0 1 chr5 84943343 84944475 -67592784 - L1Md_A LINE L1 -1 6581 5451 6 1233 1923 309 68 27 chr5 84944528 84945259 -67592000 + Tigger1 DNA MER2_type 122 882 -1536 6 1233 22 35 0 0 chr5 84945299 84945328 -67591931 + AT_rich Low_complexity Low_complexity 1 29 0 6 1233 303 239 30 0 chr5 84945431 84945498 -67591761 - B3 SINE B2 -147 69 1 6 1233 1329 74 0 0 chr5 84945525 84945700 -67591559 + L1_Mus1 LINE L1 6347 6521 -46 6 1233 996 160 31 31 chr5 84945701 84945745 -67591514 - B2_Mm2 SINE B2 0 195 157 6 1233 333 0 0 0 chr5 84945745 84945782 -67591477 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1233 996 160 31 31 chr5 84945782 84945930 -67591329 - B2_Mm2 SINE B2 -39 156 3 6 1233 3624 258 94 27 chr5 84945937 84946032 -67591227 + Tigger1 DNA MER2_type 969 1078 -1340 6 1233 1200 109 15 5 chr5 84946032 84946234 -67591025 - Lx2 LINE L1 -11 6986 6783 6 1233 3624 258 94 27 chr5 84946234 84947194 -67590065 + Tigger1 DNA MER2_type 1079 2081 -337 6 1233 514 235 65 22 chr5 84947194 84947333 -67589926 - B1_Mus2 SINE Alu -2 145 1 6 1233 3624 258 94 27 chr5 84947333 84947509 -67589750 + Tigger1 DNA MER2_type 2082 2283 -135 6 1233 310 231 0 133 chr5 84947675 84947765 -67589494 + B4 SINE B4 215 292 0 6 1233 212 158 18 0 chr5 84947826 84947883 -67589376 + GA-rich Low_complexity Low_complexity 2 59 0 6 1233 1128 111 0 0 chr5 84947893 84948073 -67589186 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 6 1233 830 108 15 44 chr5 84948104 84948119 -67589140 - B1_Mur4 SINE Alu 0 150 139 6 1233 302 0 26 0 chr5 84948119 84948157 -67589102 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1233 894 75 0 0 chr5 84948157 84948277 -67588982 - B1_Mm SINE Alu -10 137 18 6 1233 361 169 0 0 chr5 84948429 84948494 -67588765 - ORR1B1 LTR MaLR -329 65 1 6 1233 251 28 0 27 chr5 84948859 84948896 -67588363 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 7 1233 678 304 39 30 chr5 84948896 84949174 -67588085 + MLT1E1A LTR MaLR 240 636 -44 7 1233 597 14 0 0 chr5 84949282 84949352 -67587907 + (CA)n Simple_repeat Simple_repeat 2 71 0 7 1233 417 289 40 167 chr5 84949454 84949682 -67587577 + ID_B1 SINE B4 2 200 -24 7 1233 38 51 0 0 chr5 84950010 84950069 -67587190 + AT_rich Low_complexity Low_complexity 1 59 0 7 1233 369 0 0 0 chr5 84950165 84950206 -67587053 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 1233 21 57 0 0 chr5 84950922 84950957 -67586302 + AT_rich Low_complexity Low_complexity 1 35 0 7 1233 229 145 0 61 chr5 84953306 84953372 -67583887 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 7 1233 724 342 19 10 chr5 84953744 84954051 -67583208 + Lx8 LINE L1 6353 6662 -811 7 1233 182 282 25 101 chr5 84954719 84954798 -67582461 - L4 LINE RTE -1295 734 662 7 1233 247 366 121 8 chr5 84955070 84955202 -67582057 - MER74A LTR ERVL -206 352 206 7 1233 522 0 0 0 chr5 84955234 84955292 -67581967 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1233 21 0 0 0 chr5 84955565 84955586 -67581673 + AT_rich Low_complexity Low_complexity 1 21 0 7 1233 440 186 29 0 chr5 84956580 84956682 -67580577 - Lx9 LINE L1 0 7644 7540 7 1233 279 146 48 24 chr5 84956704 84956788 -67580471 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 7 1233 1019 273 18 4 chr5 84956792 84957071 -67580188 - Lx9 LINE L1 -160 7484 7202 7 1233 519 56 0 0 chr5 84957137 84957208 -67580051 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1233 246 288 85 128 chr5 84957316 84957527 -67579732 + Lx8 LINE L1 6142 6343 -1130 7 1233 766 258 120 84 chr5 84957678 84958037 -67579222 - RMER20B LTR ERVK -22 605 234 7 1233 995 300 95 36 chr5 84958251 84958642 -67578617 + Lx8 LINE L1 6348 6761 -712 7 1233 21 36 0 0 chr5 84958649 84958677 -67578582 + AT_rich Low_complexity Low_complexity 1 28 0 7 1233 378 0 0 0 chr5 84958737 84958779 -67578480 + (TTA)n Simple_repeat Simple_repeat 2 43 0 7 1233 6089 48 5 4 chr5 84959028 84959798 -67577461 - L1Md_F2 LINE L1 0 6582 5812 7 1233 807 339 104 35 chr5 84959807 84960443 -67576816 + Lx8 LINE L1 6779 7458 -15 7 1233 340 71 0 77 chr5 84960463 84960554 -67576705 + (CAAAA)n Simple_repeat Simple_repeat 2 85 0 7 1233 338 294 41 25 chr5 84960955 84961077 -67576182 - MTEa LTR MaLR 0 379 256 7 1233 230 362 38 9 chr5 84961181 84961287 -67575972 - MLT2B3 LTR ERVL -445 109 1 7 1233 1035 247 183 8 chr5 84962536 84962891 -67574368 - MTD LTR MaLR 0 419 3 7 1233 1710 237 11 0 chr5 84963042 84963409 -67573850 - ORR1D1 LTR MaLR -1 373 3 7 1233 1344 163 39 90 chr5 84963461 84963643 -67573616 - RMER17C LTR ERVK 0 410 232 7 1233 222 37 0 0 chr5 84963643 84963670 -67573589 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 1233 1344 163 39 90 chr5 84963670 84963831 -67573428 - RMER17C LTR ERVK -179 231 86 7 1233 849 20 0 0 chr5 84963831 84963930 -67573329 + (GAA)n Simple_repeat Simple_repeat 3 101 0 7 1233 1344 163 39 90 chr5 84963930 84964017 -67573242 - RMER17C LTR ERVK -325 85 1 7 1233 199 50 0 70 chr5 84964166 84964209 -67573050 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 7 1233 793 81 194 0 chr5 84964210 84964334 -67572925 - B1_Mus1 SINE Alu 0 148 1 7 1233 1466 366 67 26 chr5 84964419 84965429 -67571830 + L1M3de LINE L1 813 1864 -4789 7 1233 1716 264 130 39 chr5 84965484 84966154 -67571105 + RCHARR1 DNA MER1_type 70 800 -174 7 1233 247 337 69 10 chr5 84966542 84966644 -67570615 + B3A SINE B2 2 109 -89 7 1233 301 345 98 25 chr5 84967785 84968020 -67569239 + L1M3de LINE L1 5687 5938 -791 7 1233 189 0 0 0 chr5 84968539 84968560 -67568699 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 7 1233 1397 180 35 62 chr5 84968580 84968918 -67568341 + ORR1A4 LTR MaLR 1 329 0 7 1233 1746 177 62 15 chr5 84968951 84969289 -67567970 - ORR1B1 LTR MaLR 0 394 41 7 1233 459 311 181 11 chr5 84970796 84971160 -67566099 + Tigger6b DNA MER2_type 8 433 -1164 7 1233 650 300 22 0 chr5 84971196 84971376 -67565883 - Lx9 LINE L1 -290 7354 7171 7 1233 562 251 120 9 chr5 84971381 84971606 -67565653 + Lx9 LINE L1 7395 7644 0 7 1233 4741 141 66 1 chr5 84972270 84973073 -67564186 + L1Md_F2 LINE L1 382 1236 -5380 7 1233 29937 86 4 3 chr5 84973073 84977300 -67559959 + L1Md_F2 LINE L1 1355 5585 -298 7 1233 7254 83 7 2 chr5 84977301 84978292 -67558967 + L1Md_F2 LINE L1 5587 6582 0 7 1233 1287 279 45 30 chr5 84978787 84979190 -67558069 + MTC LTR MaLR 13 421 0 7 1233 24 77 0 0 chr5 84979398 84979450 -67557809 + AT_rich Low_complexity Low_complexity 1 52 0 7 1233 1357 252 12 43 chr5 84979743 84980071 -67557188 + Lx6 LINE L1 7022 7339 -121 7 1233 439 260 132 0 chr5 84980837 84981022 -67556237 - ERVL-E-int LTR ERVL -2315 3399 3118 7 1233 267 133 0 0 chr5 84982645 84982690 -67554569 + (TAA)n Simple_repeat Simple_repeat 1 45 0 7 1233 6004 99 6 0 chr5 84983032 84983899 -67553360 - L1_Mm LINE L1 -1102 4781 3910 7 1233 7454 90 15 0 chr5 84983899 84985271 -67551988 + L1_Mus1 LINE L1 5181 6567 0 7 1233 1255 72 0 11 chr5 84985392 84985574 -67551685 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1233 508 287 32 8 chr5 84985582 84985705 -67551554 - B1F SINE Alu -21 128 3 7 1233 25 0 0 0 chr5 84986028 84986053 -67551206 + AT_rich Low_complexity Low_complexity 1 25 0 7 1233 450 36 0 0 chr5 84986278 84986334 -67550925 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1233 315 0 0 0 chr5 84988382 84988417 -67548842 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1233 1179 279 59 18 chr5 84988450 84988840 -67548419 - MTD LTR MaLR 0 419 14 7 1233 507 333 106 66 chr5 84989683 84989956 -67547303 + MTD LTR MaLR 106 389 -30 7 1233 501 17 0 0 chr5 84990163 84990221 -67547038 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1233 414 0 0 0 chr5 84990501 84990547 -67546712 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1233 548 176 49 0 chr5 84990930 84991032 -67546227 + RMER6B LTR ERVK 3 109 -352 7 1233 1371 182 92 4 chr5 84991035 84991307 -67545952 + RMER6B LTR ERVK 1 297 -164 7 1233 950 182 0 0 chr5 84991307 84991477 -67545782 + RLTR12A LTR ERVK 1 170 -398 7 1233 1100 222 11 95 chr5 84991525 84991915 -67545344 + Lx2B LINE L1 6641 7005 -3 7 1233 301 321 124 55 chr5 84991935 84992314 -67544945 - L1MEg LINE L1 -4423 1661 1257 7 1233 308 163 0 0 chr5 84992502 84992551 -67544708 - HAL1-3A_ME LINE L1 -834 2024 1976 7 1233 231 214 18 18 chr5 84992561 84992618 -67544641 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1233 26 0 0 0 chr5 84993349 84993375 -67543884 + AT_rich Low_complexity Low_complexity 1 26 0 7 1233 921 321 31 74 chr5 84993472 84993916 -67543343 + Lx6 LINE L1 7013 7437 -23 7 1233 22 88 0 0 chr5 84994172 84994229 -67543030 + AT_rich Low_complexity Low_complexity 1 57 0 7 1233 1068 89 7 0 chr5 84995321 84995467 -67541792 + B1_Mus1 SINE Alu 2 148 0 7 1233 305 24 24 0 chr5 84995494 84995536 -67541723 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 7 1233 2293 192 75 0 chr5 84996133 84996570 -67540689 - Lx4A LINE L1 -3 7055 6586 7 1233 8478 138 60 24 chr5 84996564 84998151 -67539108 + L1_Mur2 LINE L1 2116 3760 -2117 7 1233 275 110 0 68 chr5 84998702 84998790 -67538469 + A-rich Low_complexity Low_complexity 3 84 0 7 1233 201 196 0 0 chr5 84998842 84998888 -67538371 + (TCTG)n Simple_repeat Simple_repeat 3 48 0 7 1233 22 0 0 0 chr5 84999189 84999211 -67538048 + AT_rich Low_complexity Low_complexity 1 22 0 7 1233 21 89 0 0 chr5 84999620 84999676 -67537583 + AT_rich Low_complexity Low_complexity 1 56 0 7 1233 509 293 0 8 chr5 85000006 85000130 -67537129 + ID_B1 SINE B4 102 224 0 1 1233 255 61 0 0 chr5 85000153 85000186 -67537073 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2 1233 29 47 0 0 chr5 85000374 85000417 -67536842 + AT_rich Low_complexity Low_complexity 1 43 0 3 1233 308 302 137 8 chr5 85000487 85000604 -67536655 - MLT1A0 LTR MaLR -224 141 10 4 1233 23 33 0 0 chr5 85001159 85001189 -67536070 + AT_rich Low_complexity Low_complexity 1 30 0 5 1233 312 27 0 0 chr5 85001562 85001599 -67535660 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1233 502 288 98 21 chr5 85001685 85001919 -67535340 + L1_Mur3 LINE L1 4873 5124 -756 7 1233 4134 108 65 3 chr5 85001931 85002580 -67534679 - Lx3_Mus LINE L1 -324 6685 5997 8 1233 357 282 96 29 chr5 85002569 85002582 -67534677 + L1_Mur3 LINE L1 5102 5114 -766 7 1233 2197 113 14 29 chr5 85002582 85002927 -67534332 + Lx3_Mus LINE L1 6668 7007 -2 8 1233 357 282 96 29 chr5 85002927 85003121 -67534138 + L1_Mur3 LINE L1 5115 5322 -558 7 1233 948 278 34 0 chr5 85003128 85003337 -67533922 - B3 SINE B2 0 216 1 9 1233 338 214 48 0 chr5 85003346 85003430 -67533829 + Lx8 LINE L1 5323 5410 -437 1 1233 229 158 17 34 chr5 85003465 85003524 -67533735 + GA-rich Low_complexity Low_complexity 2 59 0 1 1233 695 259 67 34 chr5 85003525 85003820 -67533439 + Lx8 LINE L1 5471 5786 -514 1 1233 748 133 232 27 chr5 85003821 85004006 -67533253 + RMER17C LTR ERVK 188 410 0 1 1233 622 306 113 42 chr5 85004006 85004439 -67532820 + Lx8 LINE L1 6144 6607 -866 1 1233 607 336 81 40 chr5 85004435 85004879 -67532380 + Lx8 LINE L1 6813 7274 -199 1 1233 1112 40 20 7 chr5 85005329 85005480 -67531779 + L1Md_F2 LINE L1 6422 6574 -8 1 1233 209 176 38 38 chr5 85005639 85005692 -67531567 + T-rich Low_complexity Low_complexity 3 55 0 1 1233 285 75 0 0 chr5 85006328 85006368 -67530891 + (TATAA)n Simple_repeat Simple_repeat 1 40 0 1 1233 24 53 0 0 chr5 85007096 85007134 -67530125 + AT_rich Low_complexity Low_complexity 1 38 0 1 1233 625 278 95 0 chr5 85007158 85007327 -67529932 - B3A SINE B2 -11 187 3 1 1233 341 256 26 0 chr5 85007493 85007571 -67529688 - MER45R DNA Tip100 -1473 108 29 1 1233 369 115 0 0 chr5 85007662 85007714 -67529545 + RMER6C LTR ERVK 4 55 -665 1 1233 398 145 193 0 chr5 85007714 85007797 -67529462 + RMER6-int LTR ERVK 573 671 -2506 1 1233 1118 177 23 23 chr5 85007793 85008013 -67529246 + RMER6-int LTR ERVK 1523 1742 -1435 1 1233 288 149 0 0 chr5 85008011 85008058 -67529201 + RMER6-int LTR ERVK 2470 2516 -661 1 1233 293 246 0 0 chr5 85008059 85008120 -67529139 + LSU-rRNA_Hsa rRNA rRNA 1777 1837 -3198 2 1233 751 129 7 35 chr5 85008120 85008264 -67528995 + RMER6-int LTR ERVK 2579 2718 -459 1 1233 4599 111 7 3 chr5 85008265 85008942 -67528317 - Lx3B LINE L1 -240 6733 6054 2 1233 1224 176 107 27 chr5 85008996 85009258 -67528001 + RMER6-int LTR ERVK 2738 3020 -157 1 1233 11881 115 18 78 chr5 85009544 85012332 -67524927 + L1_Mus1 LINE L1 3934 6567 0 2 1233 440 107 27 0 chr5 85012335 85012410 -67524849 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 2 1233 1251 109 21 40 chr5 85012594 85012856 -67524403 - RLTR9D LTR ERVK 0 415 145 2 1233 1093 152 44 39 chr5 85012836 85013042 -67524217 + MTA_Mm LTR MaLR 190 396 0 2 1233 3878 129 24 9 chr5 85013042 85013677 -67523582 + MTA_Mm-int LTR MaLR 1 644 -454 2 1233 2705 163 126 15 chr5 85013840 85014362 -67522897 - RLTR31A_Mm LTR ERVK 0 584 5 2 1233 2340 205 21 131 chr5 85014539 85015003 -67522256 + RMER6C LTR ERVK 1 376 -314 1 1233 260 70 0 23 chr5 85015003 85015047 -67522212 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 2 1233 1070 106 0 11 chr5 85015051 85015233 -67522026 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1233 2340 205 21 131 chr5 85015233 85015539 -67521720 + RMER6C LTR ERVK 377 690 0 1 1233 25 31 0 0 chr5 85015625 85015657 -67521602 + AT_rich Low_complexity Low_complexity 1 32 0 2 1233 32 57 0 0 chr5 85015706 85015759 -67521500 + AT_rich Low_complexity Low_complexity 1 53 0 3 1233 3151 119 2 2 chr5 85016472 85016953 -67520306 - Lx LINE L1 -7 6647 6167 3 1233 244 346 12 25 chr5 85017122 85017202 -67520057 - ID4 SINE ID 0 83 5 3 1233 344 326 156 24 chr5 85018095 85018384 -67518875 + Lx8 LINE L1 6518 6844 -629 3 1233 4623 121 38 3 chr5 85018385 85019091 -67518168 + Lx LINE L1 5918 6648 -6 3 1233 2162 61 4 11 chr5 85019100 85019380 -67517879 + L1Md_F2 LINE L1 5309 5586 -297 3 1233 7732 59 7 0 chr5 85019380 85020367 -67516892 + L1Md_F2 LINE L1 5587 6580 -2 3 1233 865 288 50 86 chr5 85020776 85021160 -67516099 + ORR1D2 LTR MaLR 1 370 0 3 1233 252 212 15 0 chr5 85021671 85021737 -67515522 + Lx9 LINE L1 7577 7643 -1 3 1233 248 221 7 91 chr5 85022324 85022478 -67514781 - Lx9 LINE L1 -46 7598 7458 3 1233 207 100 0 0 chr5 85022478 85022508 -67514751 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 3 1233 369 219 11 33 chr5 85022873 85023057 -67514202 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1233 29 28 0 0 chr5 85023614 85023650 -67513609 + AT_rich Low_complexity Low_complexity 1 36 0 4 1233 1428 288 35 18 chr5 85023945 85024344 -67512915 + MTD LTR MaLR 6 411 -8 4 1233 285 286 0 72 chr5 85024570 85024653 -67512606 + B4A SINE B4 31 107 -185 4 1233 456 35 0 0 chr5 85024784 85024842 -67512417 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1233 27091 102 15 5 chr5 85026000 85030137 -67507122 + Lx3_Mus LINE L1 1676 5907 -1102 4 1233 1015 63 3 62 chr5 85030137 85030494 -67506765 + (GAAA)n Simple_repeat Simple_repeat 1 335 0 4 1233 8591 121 54 10 chr5 85030494 85031591 -67505668 + Lx3_Mus LINE L1 5908 7008 -1 4 1233 25 31 0 0 chr5 85031600 85031632 -67505627 + AT_rich Low_complexity Low_complexity 1 32 0 4 1233 261 0 0 0 chr5 85031648 85031677 -67505582 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1233 618 128 0 0 chr5 85032495 85032612 -67504647 + (TTTTG)n Simple_repeat Simple_repeat 2 118 0 4 1233 462 265 8 25 chr5 85032616 85032777 -67504482 - Lx5 LINE L1 -470 6580 6458 5 1233 2149 193 52 12 chr5 85032790 85033397 -67503862 - Lx5 LINE L1 -979 6071 5439 5 1233 328 245 28 41 chr5 85033604 85033749 -67503510 - Lx9 LINE L1 -14 7630 7488 5 1233 542 311 65 86 chr5 85033757 85034222 -67503037 + L1MC LINE L1 4887 5341 -805 5 1233 22 0 0 0 chr5 85034649 85034671 -67502588 + AT_rich Low_complexity Low_complexity 1 22 0 5 1233 3227 38 2 7 chr5 85034673 85035076 -67502183 - L1Md_F2 LINE L1 -3 6579 6179 5 1233 393 304 34 17 chr5 85035076 85035193 -67502066 + B1_Mur1 SINE Alu 18 136 -13 5 1233 23 0 0 0 chr5 85035359 85035382 -67501877 + AT_rich Low_complexity Low_complexity 1 23 0 5 1233 892 292 122 29 chr5 85036584 85037368 -67499891 + L1MC3 LINE L1 6910 7766 -19 5 1233 232 289 12 73 chr5 85037562 85037644 -67499615 - L2 LINE L2 -597 2822 2746 5 1233 231 236 22 33 chr5 85038116 85038208 -67499051 + (CAAA)n Simple_repeat Simple_repeat 2 92 0 5 1233 1314 286 79 38 chr5 85038430 85038961 -67498298 - RLTR20B3 LTR ERVK -4 573 21 6 1233 2115 78 0 31 chr5 85039087 85039380 -67497879 - L1_Mus4 LINE L1 -286 6350 6067 6 1233 2827 101 10 0 chr5 85039375 85039783 -67497476 + L1_Mus4 LINE L1 5669 6080 -556 6 1233 925 168 0 0 chr5 85039769 85039942 -67497317 - L1_Mur2 LINE L1 -539 5338 5166 6 1233 5605 217 71 10 chr5 85039942 85041212 -67496047 + Lx5 LINE L1 5704 7050 0 6 1233 362 133 0 0 chr5 85042196 85042271 -67494988 + Lx4A LINE L1 6981 7055 -3 6 1233 458 335 126 20 chr5 85042451 85042753 -67494506 + MER44A DNA MER2_type 6 339 0 6 1233 238 164 28 56 chr5 85043406 85043458 -67493801 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 1233 546 16 0 0 chr5 85043458 85043521 -67493738 + (GA)n Simple_repeat Simple_repeat 2 64 0 6 1233 238 164 28 56 chr5 85043521 85043539 -67493720 + (TA)n Simple_repeat Simple_repeat 2 18 0 6 1233 626 363 37 6 chr5 85043631 85043955 -67493304 - Lx8 LINE L1 -134 7339 7006 6 1233 28 0 0 0 chr5 85044267 85044295 -67492964 + AT_rich Low_complexity Low_complexity 1 28 0 7 1233 202 140 45 23 chr5 85044340 85044384 -67492875 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 7 1233 528 59 0 0 chr5 85044823 85044891 -67492368 + (TA)n Simple_repeat Simple_repeat 2 69 0 7 1233 323 167 15 0 chr5 85045893 85045959 -67491300 + CT-rich Low_complexity Low_complexity 3 69 0 7 1233 21 0 0 0 chr5 85046297 85046318 -67490941 + AT_rich Low_complexity Low_complexity 1 21 0 7 1233 2908 99 0 10 chr5 85049127 85049536 -67487723 - MTB_Mm LTR MaLR 0 407 3 7 1233 2805 207 37 35 chr5 85050370 85050996 -67486263 - Lx5 LINE L1 -270 6780 6154 7 1233 23 0 0 0 chr5 85052447 85052470 -67484789 + AT_rich Low_complexity Low_complexity 1 23 0 7 1233 582 273 26 62 chr5 85052572 85052767 -67484492 - Lx8 LINE L1 -132 7341 7154 7 1233 1954 199 40 154 chr5 85053638 85053799 -67483460 + RMER6C LTR ERVK 1 142 -548 7 1233 3828 155 10 33 chr5 85053799 85054505 -67482754 + Lx3C LINE L1 6285 6974 -2 8 1233 1954 199 40 154 chr5 85054505 85054647 -67482612 + RMER6C LTR ERVK 143 210 -480 7 1233 377 20 20 0 chr5 85054647 85054697 -67482562 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1233 1954 199 40 154 chr5 85054697 85055171 -67482088 + RMER6C LTR ERVK 211 690 0 7 1233 26 0 0 0 chr5 85055449 85055475 -67481784 + AT_rich Low_complexity Low_complexity 1 26 0 8 1233 186 174 0 0 chr5 85055512 85055558 -67481701 + T-rich Low_complexity Low_complexity 1 46 0 8 1233 891 142 0 0 chr5 85056350 85056498 -67480761 + (TA)n Simple_repeat Simple_repeat 2 149 0 8 1233 31 44 0 0 chr5 85056514 85056559 -67480700 + AT_rich Low_complexity Low_complexity 1 45 0 8 1233 21 0 0 0 chr5 85056938 85056959 -67480300 + AT_rich Low_complexity Low_complexity 1 21 0 8 1233 184 359 18 28 chr5 85056991 85057100 -67480159 - MIR SINE MIR -101 161 54 8 1233 318 26 0 0 chr5 85057115 85057154 -67480105 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1233 1087 62 14 0 chr5 85057251 85057396 -67479863 - B1_Mm SINE Alu 0 147 1 8 1233 299 293 42 116 chr5 85057426 85057642 -67479617 - B3 SINE B2 -16 200 1 9 1233 2511 199 49 2 chr5 85057819 85058352 -67478907 + Lx9 LINE L1 6832 7389 -255 9 1233 486 0 0 0 chr5 85058804 85058858 -67478401 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1233 6005 143 44 15 chr5 85059608 85060672 -67476587 + Lx3B LINE L1 5878 6972 -1 9 1233 951 127 0 0 chr5 85060689 85060839 -67476420 + (GGAA)n Simple_repeat Simple_repeat 2 151 0 9 1233 23 78 0 0 chr5 85062965 85063016 -67474243 + AT_rich Low_complexity Low_complexity 1 51 0 9 1233 323 289 167 35 chr5 85064543 85064801 -67472458 - L1MD1 LINE L1 -29 6213 5922 9 1233 342 303 79 23 chr5 85064802 85065018 -67472241 - L1MD LINE L1 -3433 2713 2486 9 1233 22 0 0 0 chr5 85065066 85065088 -67472171 + AT_rich Low_complexity Low_complexity 1 22 0 9 154 760 267 211 31 chr5 85065498 85065792 -67471467 - MTD LTR MaLR -58 361 3 9 1234 1985 179 15 16 chr5 85065788 85066244 -67471015 + RMER6C LTR ERVK 1 439 -281 1 1234 180 0 0 0 chr5 85066334 85066354 -67470905 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1234 3591 269 65 28 chr5 85066437 85067659 -67469600 + Lx9 LINE L1 6345 7611 -33 1 1234 499 15 0 15 chr5 85068827 85068894 -67468365 - L1Md_T LINE L1 -2 6580 6515 1 1234 423 0 0 0 chr5 85069258 85069305 -67467954 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1 1234 393 361 53 19 chr5 85069305 85069511 -67467748 - B4A SINE B4 -79 213 1 1 1234 28 0 0 0 chr5 85069868 85069896 -67467363 + AT_rich Low_complexity Low_complexity 1 28 0 1 1234 288 0 0 0 chr5 85070323 85070355 -67466904 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1234 495 0 0 0 chr5 85070355 85070409 -67466850 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1234 414 0 0 0 chr5 85070934 85070980 -67466279 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1234 352 212 138 0 chr5 85072526 85072606 -67464653 + B3 SINE B2 2 92 -124 1 1234 4465 118 7 6 chr5 85072610 85073316 -67463943 - L1_Mus4 LINE L1 -4 6632 5926 1 1234 225 0 0 0 chr5 85073695 85073720 -67463539 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1234 415 132 59 0 chr5 85074971 85075039 -67462220 + IAPEY2_LTR LTR ERVK 1 72 -285 1 1234 2741 287 55 24 chr5 85075040 85075373 -67461886 - Lx6 LINE L1 -2191 3689 3566 1 1234 594 0 0 0 chr5 85075373 85075439 -67461820 + (TTTC)n Simple_repeat Simple_repeat 4 69 0 1 1234 2741 206 50 1 chr5 85075439 85075989 -67461270 - Lx6 LINE L1 -2315 3565 3002 1 1234 2124 231 26 81 chr5 85076045 85077027 -67460232 - Lx6 LINE L1 -4069 1808 879 1 1234 273 346 43 14 chr5 85077683 85077821 -67459438 - MER58B DNA MER1_type -17 324 183 1 1234 1049 130 0 6 chr5 85077890 85078068 -67459191 + Lx LINE L1 6478 6654 0 1 1234 1181 184 248 0 chr5 85078300 85078594 -67458665 + ORR1B2 LTR MaLR 1 367 0 1 1234 44 35 0 0 chr5 85079597 85079655 -67457604 + AT_rich Low_complexity Low_complexity 1 58 0 1 1234 426 282 23 15 chr5 85080514 85080647 -67456612 + B1F SINE Alu 3 136 -13 1 1234 250 232 0 0 chr5 85081609 85081665 -67455594 + HAL1 LINE L1 2446 2501 -6 1 1234 25 99 0 0 chr5 85082036 85082117 -67455142 + AT_rich Low_complexity Low_complexity 1 81 0 1 1234 459 346 82 64 chr5 85082404 85082858 -67454401 + MT2A LTR ERVL 1 462 -71 1 1234 21 0 0 0 chr5 85082982 85083003 -67454256 + AT_rich Low_complexity Low_complexity 1 21 0 1 1234 360 43 0 0 chr5 85083116 85083162 -67454097 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1234 3465 103 112 0 chr5 85083471 85083996 -67453263 - MT2B2 LTR ERVL 0 584 1 1 1234 30 59 0 0 chr5 85085537 85085588 -67451671 + AT_rich Low_complexity Low_complexity 1 51 0 1 1234 3879 89 5 25 chr5 85085588 85086154 -67451105 - Lx3_Mus LINE L1 0 7009 6455 1 1234 17732 26 0 0 chr5 85086488 85089238 -67448021 - L1Md_T LINE L1 0 6582 3833 1 1234 591 227 0 12 chr5 85089235 85089400 -67447859 + L1Md_F LINE L1 9 171 -6348 1 1234 234 164 0 0 chr5 85089750 85089805 -67447454 + CT-rich Low_complexity Low_complexity 1 55 0 1 1234 1552 279 59 14 chr5 85089855 85090126 -67447133 - Lx6 LINE L1 -184 7276 6982 1 1234 816 40 0 0 chr5 85090126 85090226 -67447033 + (TA)n Simple_repeat Simple_repeat 2 101 0 1 1234 1552 279 59 14 chr5 85090226 85090394 -67446865 - Lx6 LINE L1 -479 6981 6818 1 1234 2446 23 134 0 chr5 85092231 85092536 -67444723 - ORR1A1 LTR MaLR 0 346 1 1 1234 25 90 0 0 chr5 85092537 85092604 -67444655 + AT_rich Low_complexity Low_complexity 1 67 0 1 1234 380 326 67 77 chr5 85092869 85093008 -67444251 - Lx8 LINE L1 -5 7468 7327 1 1234 3078 76 0 2 chr5 85093008 85093403 -67443856 + MTA_Mm LTR MaLR 3 396 0 1 1234 380 326 67 77 chr5 85093403 85093541 -67443718 - Lx8 LINE L1 -147 7326 7192 1 1234 1082 49 0 0 chr5 85093541 85093684 -67443575 + L1Md_A LINE L1 6440 6582 0 1 1234 380 326 67 77 chr5 85093684 85093794 -67443465 - Lx8 LINE L1 -282 7191 7084 1 1234 4901 73 14 170 chr5 85093791 85094737 -67442522 + L1Md_F2 LINE L1 4788 5585 -298 1 1234 7763 55 2 3 chr5 85094738 85095733 -67441526 + L1Md_F2 LINE L1 5587 6580 -2 1 1234 1752 70 140 4 chr5 85095733 85095843 -67441416 + L1_Mm LINE L1 5294 5404 -479 1 1234 273 29 0 0 chr5 85095843 85095877 -67441382 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1234 1752 71 139 4 chr5 85095877 85096024 -67441235 + L1_Mm LINE L1 5405 5589 -297 1 1234 7297 71 7 17 chr5 85096024 85097013 -67440246 + L1Md_F2 LINE L1 5587 6565 -17 1 1234 227 277 88 10 chr5 85097052 85097154 -67440105 - L1_Rod LINE L1 0 5847 5738 1 1234 297 0 0 0 chr5 85097166 85097199 -67440060 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1234 69 48 0 0 chr5 85098282 85098386 -67438873 + AT_rich Low_complexity Low_complexity 1 104 0 1 1234 223 336 67 22 chr5 85099025 85099159 -67438100 - L3 LINE CR1 -1143 3346 3207 1 1234 2209 157 32 12 chr5 85099680 85100081 -67437178 + Lx2 LINE L1 6573 6981 -16 1 1234 558 305 53 43 chr5 85100132 85100341 -67436918 - B3 SINE B2 0 216 6 1 1234 606 12 24 12 chr5 85100750 85100834 -67436425 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 1 1234 639 366 24 11 chr5 85100895 85101276 -67435983 + Lx8 LINE L1 6806 7191 -282 1 1234 28 0 0 0 chr5 85101432 85101460 -67435799 + AT_rich Low_complexity Low_complexity 1 28 0 1 1234 23 33 0 0 chr5 85102022 85102052 -67435207 + AT_rich Low_complexity Low_complexity 1 30 0 1 1234 347 344 7 64 chr5 85102377 85102517 -67434742 - 7SK RNA RNA -94 237 106 1 1234 416 182 11 0 chr5 85102539 85102627 -67434632 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 1234 610 312 73 52 chr5 85103386 85103714 -67433545 + Lx8 LINE L1 6824 7158 -315 1 1234 425 282 150 25 chr5 85104013 85104253 -67433006 + Lx8 LINE L1 7202 7471 -2 1 1234 28 29 0 0 chr5 85104520 85104555 -67432704 + AT_rich Low_complexity Low_complexity 1 35 0 1 1234 300 102 0 0 chr5 85105772 85105821 -67431438 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1234 337 286 60 35 chr5 85105910 85106026 -67431233 - RMER15 LTR ERVL -154 421 303 1 1234 41 0 0 0 chr5 85106094 85106135 -67431124 + AT_rich Low_complexity Low_complexity 1 41 0 1 1234 1189 226 96 23 chr5 85106137 85106522 -67430737 + Lx9 LINE L1 7232 7644 0 1 1234 21 71 0 0 chr5 85106528 85106570 -67430689 + AT_rich Low_complexity Low_complexity 1 42 0 1 1234 201 91 86 52 chr5 85107194 85107252 -67430007 + (TAAA)n Simple_repeat Simple_repeat 3 62 0 1 1234 980 285 30 0 chr5 85107267 85107530 -67429729 - Lx6 LINE L1 -865 6595 6325 1 1234 387 209 0 23 chr5 85107557 85107645 -67429614 - L1_Mur3 LINE L1 -959 4921 4836 1 1234 309 152 7 35 chr5 85107645 85107788 -67429471 + (TA)n Simple_repeat Simple_repeat 1 139 0 1 1234 6461 212 88 28 chr5 85107800 85108576 -67428683 - L1_Mur3 LINE L1 -1064 4816 3968 1 1234 190 0 32 32 chr5 85108576 85108607 -67428652 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1234 6461 212 88 28 chr5 85108607 85109661 -67427598 - L1_Mur3 LINE L1 -1913 3967 2876 1 1234 1356 194 65 35 chr5 85110001 85110589 -67426670 + RMER6A LTR ERVK 109 754 -2 1 1234 371 374 63 56 chr5 85111209 85111495 -67425764 + B4A SINE B4 5 292 0 1 1234 28 0 0 0 chr5 85111545 85111573 -67425686 + AT_rich Low_complexity Low_complexity 1 28 0 1 1234 199 213 27 0 chr5 85111771 85111846 -67425413 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 1 1234 520 57 0 44 chr5 85112510 85112601 -67424658 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 1 1234 471 35 0 0 chr5 85112731 85112788 -67424471 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1234 22 0 0 0 chr5 85113251 85113273 -67423986 + AT_rich Low_complexity Low_complexity 1 22 0 1 1234 1167 83 0 23 chr5 85114162 85114334 -67422925 + L1_Mus1 LINE L1 6400 6567 0 1 1234 24 67 0 0 chr5 85114589 85114634 -67422625 + AT_rich Low_complexity Low_complexity 1 45 0 1 1234 863 340 26 29 chr5 85115261 85115612 -67421647 + MTE2a LTR MaLR 26 375 -4 1 1234 21 0 0 0 chr5 85116962 85116983 -67420276 + AT_rich Low_complexity Low_complexity 1 21 0 1 1234 305 208 53 46 chr5 85117469 85117546 -67419713 + (CATATA)n Simple_repeat Simple_repeat 4 81 0 1 1234 468 0 0 0 chr5 85117546 85117598 -67419661 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1234 305 208 53 46 chr5 85117598 85117651 -67419608 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 1 1234 533 274 103 9 chr5 85117715 85117929 -67419330 + Lx6 LINE L1 7184 7417 -43 1 1234 264 59 0 0 chr5 85117936 85117970 -67419289 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1234 1391 126 9 13 chr5 85118355 85118580 -67418679 - L1_Mus3 LINE L1 -8 6630 6407 1 1234 23 33 0 0 chr5 85119245 85119275 -67417984 + AT_rich Low_complexity Low_complexity 1 30 0 1 1234 197 33 33 0 chr5 85120392 85120422 -67416837 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1234 9760 164 33 27 chr5 85120793 85123666 -67413593 + MusHAL1 LINE L1 570 3462 -2424 1 1234 1028 286 56 43 chr5 85123833 85124227 -67413032 + Lx9 LINE L1 6777 7175 -469 1 1234 301 186 85 0 chr5 85124337 85124396 -67412863 + RMER6D LTR ERVK 1 64 -656 1 1234 5299 167 60 5 chr5 85124397 85125885 -67411374 - Lx LINE L1 0 6654 5081 1 1234 254 86 0 0 chr5 85125890 85125925 -67411334 + MusHAL1 LINE L1 4159 4193 -1684 1 1234 1290 221 21 62 chr5 85126082 85126420 -67410839 + RMER6A LTR ERVK 433 756 0 1 1234 357 298 8 8 chr5 85126436 85126561 -67410698 + Lx9 LINE L1 7348 7472 -172 1 1234 384 22 0 0 chr5 85126597 85126642 -67410617 + (TAA)n Simple_repeat Simple_repeat 3 47 0 1 1234 257 118 0 38 chr5 85127615 85127668 -67409591 + Lx6 LINE L1 7410 7460 0 1 1234 3085 288 99 9 chr5 85127742 85128728 -67408531 - RMER1A Other Other -20 1010 27 1 1234 21 36 0 0 chr5 85130018 85130046 -67407213 + AT_rich Low_complexity Low_complexity 1 28 0 1 1234 21 36 0 0 chr5 85130301 85130329 -67406930 + AT_rich Low_complexity Low_complexity 1 28 0 1 1234 261 0 0 0 chr5 85130341 85130370 -67406889 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1234 2856 148 67 0 chr5 85130374 85130868 -67406391 - Lx2 LINE L1 -410 6587 6061 1 1234 1845 130 42 3 chr5 85130868 85131177 -67406082 + Lx2 LINE L1 6675 6995 -2 1 1234 1973 286 82 25 chr5 85131182 85132033 -67405226 + L1_Mur3 LINE L1 4780 5679 -201 1 1234 22 56 0 0 chr5 85132231 85132267 -67404992 + AT_rich Low_complexity Low_complexity 1 36 0 2 1234 21 0 0 0 chr5 85133027 85133048 -67404211 + AT_rich Low_complexity Low_complexity 1 21 0 2 1234 1317 82 0 27 chr5 85133290 85133478 -67403781 - L1_Mus1 LINE L1 -1 6566 6384 2 1234 4999 94 107 3 chr5 85133478 85134225 -67403034 - L1_Mm LINE L1 -209 5674 4850 2 1234 295 79 0 0 chr5 85134217 85134255 -67403004 + L1_Mm LINE L1 4820 4857 -1026 2 1234 2194 246 58 54 chr5 85134252 85135307 -67401952 - L1Md_F LINE L1 -5476 1065 120 2 1234 30 54 0 39 chr5 85135367 85135444 -67401815 + AT_rich Low_complexity Low_complexity 1 74 0 2 1234 320 336 64 18 chr5 85136555 85136664 -67400595 - B1F1 SINE Alu -35 114 1 2 1234 180 152 0 0 chr5 85136673 85136706 -67400553 + T-rich Low_complexity Low_complexity 2 34 0 2 1234 3221 149 40 4 chr5 85136708 85137260 -67399999 - Lx2 LINE L1 -1 6996 6425 2 1234 286 80 0 39 chr5 85137851 85137903 -67399356 + (TTTC)n Simple_repeat Simple_repeat 4 53 0 2 1234 246 58 37 37 chr5 85137919 85137973 -67399286 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2 1234 1271 277 31 3 chr5 85138368 85138723 -67398536 + Lx5 LINE L1 6686 7050 0 2 1234 409 236 11 0 chr5 85139127 85139216 -67398043 + MTEb LTR MaLR 268 357 -22 2 1234 837 296 53 23 chr5 85139202 85139503 -67397756 - MTEa LTR MaLR -69 310 1 2 1234 455 321 105 15 chr5 85141106 85141438 -67395821 + L1MB2 LINE L1 5567 5928 -243 2 1234 423 98 0 0 chr5 85141451 85141512 -67395747 + (CAT)n Simple_repeat Simple_repeat 3 63 0 2 1234 1857 288 124 19 chr5 85141559 85142253 -67395006 - Lx6 LINE L1 -642 6818 6052 2 1234 704 59 0 33 chr5 85142256 85142378 -67394881 - L1Md_F2 LINE L1 -2 6580 6463 2 1234 457 335 55 98 chr5 85142383 85142548 -67394711 - Lx8 LINE L1 -137 7336 7175 2 1234 1674 57 0 0 chr5 85142548 85142760 -67394499 + L1Md_T LINE L1 6371 6582 0 2 1234 489 314 55 29 chr5 85142760 85142999 -67394260 - Lx8 LINE L1 -299 7174 6939 2 1234 1158 312 11 11 chr5 85143333 85143699 -67393560 - Lx8 LINE L1 -515 6958 6593 2 1234 315 0 0 0 chr5 85144125 85144160 -67393099 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1234 2872 304 95 45 chr5 85144179 85145634 -67391625 - Lx8 LINE L1 -1256 6217 4656 2 1234 183 80 0 0 chr5 85145634 85145659 -67391600 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2 1234 2872 296 99 46 chr5 85145659 85146799 -67390460 - Lx8 LINE L1 -1225 4655 3480 2 1234 35214 72 1 4 chr5 85146833 85152831 -67384428 - L1Md_F3 LINE L1 -2 6582 607 2 1234 517 278 85 34 chr5 85152826 85153154 -67384105 - Lx8 LINE L1 -2391 3489 3145 2 1234 225 243 71 0 chr5 85153195 85153265 -67383994 - Lx6 LINE L1 -19 7441 7367 2 1234 388 189 17 51 chr5 85153278 85153395 -67383864 + Lx3A LINE L1 6863 6975 -6 2 1234 596 321 44 37 chr5 85153422 85153442 -67383817 - Lx6 LINE L1 -242 7218 7198 2 1234 201 39 0 0 chr5 85153442 85153468 -67383791 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 2 1234 596 333 37 42 chr5 85153468 85153823 -67383436 - Lx6 LINE L1 -263 7197 6946 2 1234 600 50 0 0 chr5 85153831 85153911 -67383348 + (TTCTC)n Simple_repeat Simple_repeat 1 80 0 2 1234 871 97 22 49 chr5 85153914 85154099 -67383160 + C-rich Low_complexity Low_complexity 1 180 0 2 1234 680 130 0 9 chr5 85154111 85154227 -67383032 + (TTCTC)n Simple_repeat Simple_repeat 3 117 0 2 1234 268 280 59 44 chr5 85154233 85154386 -67382873 - Lx6 LINE L1 -712 6748 6605 2 1234 301 370 35 19 chr5 85154389 85154648 -67382611 - L1M2 LINE L1 -2980 3163 2901 2 1234 326 297 156 27 chr5 85155063 85155319 -67381940 + Lx8 LINE L1 7167 7455 -18 2 1234 328 166 20 102 chr5 85155764 85155957 -67381302 - Lx9 LINE L1 -7 7637 7409 2 1234 1074 320 37 30 chr5 85156043 85156445 -67380814 - MTD LTR MaLR -1 418 14 2 1234 23 54 0 0 chr5 85156508 85156545 -67380714 + AT_rich Low_complexity Low_complexity 1 37 0 2 1234 3546 60 49 4 chr5 85156794 85157263 -67379996 + L1Md_F2 LINE L1 6084 6573 -9 2 1234 374 0 22 0 chr5 85157606 85157652 -67379607 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 1234 28 29 0 0 chr5 85158504 85158539 -67378720 + AT_rich Low_complexity Low_complexity 1 35 0 2 1234 215 190 0 17 chr5 85158926 85158985 -67378274 + A-rich Low_complexity Low_complexity 5 62 0 2 1234 500 56 14 0 chr5 85161609 85161681 -67375578 + (TTTC)n Simple_repeat Simple_repeat 1 73 0 2 1234 909 139 0 27 chr5 85161681 85161866 -67375393 + CT-rich Low_complexity Low_complexity 1 180 0 2 1234 322 227 54 9 chr5 85161894 85162005 -67375254 - Lx9 LINE L1 0 7644 7529 2 1234 7182 145 33 10 chr5 85164352 85165981 -67371278 + L1_Mur1 LINE L1 4128 5886 0 2 1234 414 0 0 0 chr5 85166000 85166046 -67371213 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1234 462 310 7 44 chr5 85166054 85166189 -67371070 - RSINE1 SINE B4 -33 132 3 2 1234 411 269 150 18 chr5 85166413 85166640 -67370619 - RMER20B LTR ERVK -217 410 154 2 1234 22 0 0 0 chr5 85169694 85169716 -67367543 + AT_rich Low_complexity Low_complexity 1 22 0 2 1234 6265 227 33 13 chr5 85169842 85171361 -67365898 - Lx5 LINE L1 0 7050 5489 2 1234 784 42 0 0 chr5 85171733 85171829 -67365430 - L1Md_F LINE L1 -5773 746 651 2 1234 3061 17 0 0 chr5 85171821 85172173 -67365086 + L1Md_A LINE L1 5235 5586 -297 2 1234 8414 33 0 0 chr5 85172174 85173169 -67364090 + L1Md_A LINE L1 5588 6582 0 2 1234 726 178 0 4 chr5 85173366 85173617 -67363642 + CT-rich Low_complexity Low_complexity 1 249 0 2 1234 22551 160 33 20 chr5 85173618 85179800 -67357459 - L1_Mus4 LINE L1 -2 6634 374 2 1234 315 0 0 0 chr5 85179816 85179851 -67357408 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 1234 211 314 0 0 chr5 85179901 85179952 -67357307 + C-rich Low_complexity Low_complexity 5 55 0 2 1234 322 212 12 24 chr5 85179968 85180050 -67357209 - Lx6 LINE L1 -564 6896 6816 2 1234 264 329 125 6 chr5 85180129 85180297 -67356962 + MLT-int LTR MaLR 377 564 -1171 2 1234 22 35 0 0 chr5 85180338 85180367 -67356892 + AT_rich Low_complexity Low_complexity 1 29 0 2 1234 185 258 0 11 chr5 85180545 85180639 -67356620 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 1234 24 0 0 0 chr5 85180771 85180795 -67356464 + AT_rich Low_complexity Low_complexity 1 24 0 2 1234 186 71 0 0 chr5 85181843 85181871 -67355388 + (TTA)n Simple_repeat Simple_repeat 1 28 0 2 1234 27 49 0 0 chr5 85181931 85181972 -67355287 + AT_rich Low_complexity Low_complexity 1 41 0 2 1234 35331 48 0 4 chr5 85182817 85188306 -67348953 + L1Md_T LINE L1 24 5589 -297 2 1234 8395 35 0 0 chr5 85188306 85189302 -67347957 + L1Md_T LINE L1 5590 6585 0 2 1234 4312 57 2 2 chr5 85189355 85189901 -67347358 + L1Md_F2 LINE L1 6027 6572 -10 2 1234 25 0 0 0 chr5 85190114 85190139 -67347120 + AT_rich Low_complexity Low_complexity 1 25 0 2 1234 210 162 0 0 chr5 85191656 85191693 -67345566 + (TTA)n Simple_repeat Simple_repeat 3 39 0 2 1234 27 29 0 0 chr5 85192903 85192937 -67344322 + AT_rich Low_complexity Low_complexity 1 34 0 2 1234 237 154 61 15 chr5 85193259 85193325 -67343934 + A-rich Low_complexity Low_complexity 6 74 0 2 1234 1024 82 7 27 chr5 85193334 85193484 -67343775 + B1_Mus2 SINE Alu 1 147 0 2 1234 183 42 0 0 chr5 85193487 85193511 -67343748 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1234 27 0 0 0 chr5 85194717 85194744 -67342515 + AT_rich Low_complexity Low_complexity 1 27 0 2 1234 1460 131 34 0 chr5 85194862 85195098 -67342161 - L1_Mus3 LINE L1 0 6638 6395 2 1234 34 55 0 0 chr5 85195283 85195338 -67341921 + AT_rich Low_complexity Low_complexity 1 55 0 2 1234 350 15 119 0 chr5 85195532 85195599 -67341660 + (TTTTG)n Simple_repeat Simple_repeat 1 75 0 2 1234 22 0 0 0 chr5 85196693 85196715 -67340544 + AT_rich Low_complexity Low_complexity 1 22 0 2 1234 315 0 0 0 chr5 85196741 85196776 -67340483 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 154 180 77 0 0 chr5 85196776 85196801 -67340458 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1235 387 0 0 0 chr5 85197233 85197276 -67339983 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1235 892 223 17 30 chr5 85197276 85197507 -67339752 - Lx4B LINE L1 -25 7033 6806 2 1235 277 226 0 0 chr5 85197507 85197569 -67339690 - B1F SINE Alu -5 144 83 2 1235 2295 33 62 7 chr5 85197588 85197897 -67339362 + IAPEY2_LTR LTR ERVK 32 357 0 2 1235 385 34 17 33 chr5 85199097 85199157 -67338102 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 1235 387 0 0 0 chr5 85199206 85199249 -67338010 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1235 228 306 0 0 chr5 85199262 85199324 -67337935 - ID_B1 SINE B4 -20 204 143 2 1235 35578 69 1 15 chr5 85199340 85205473 -67331786 - L1Md_F2 LINE L1 0 6582 539 2 1235 2771 41 9 3 chr5 85205549 85205893 -67331366 - ORR1A0 LTR MaLR 0 346 1 2 1235 553 345 56 22 chr5 85206438 85206625 -67330634 + Lx8 LINE L1 6579 6765 -708 2 1235 590 146 0 18 chr5 85206625 85206737 -67330522 - Lx LINE L1 -2 6652 6543 2 1235 553 312 110 68 chr5 85206737 85207062 -67330197 + Lx8 LINE L1 6766 7256 -388 2 1235 240 344 47 47 chr5 85207207 85207399 -67329860 + Tigger5 DNA MER2_type 700 891 -1515 2 1235 384 331 42 11 chr5 85207909 85208169 -67329090 + L1M3 LINE L1 3285 3552 -2588 2 1235 462 359 45 27 chr5 85208371 85208706 -67328553 + Lx8 LINE L1 6982 7322 -151 2 1235 3069 137 4 32 chr5 85208725 85209230 -67328029 - Lx3C LINE L1 -9 6967 6477 2 1235 335 347 28 11 chr5 85209343 85209521 -67327738 + L1MA9 LINE L1 3850 4030 -2113 2 1235 458 351 86 37 chr5 85209817 85210326 -67326933 + L1MA9 LINE L1 4762 5295 -848 2 1235 510 247 39 198 chr5 85210347 85210579 -67326680 - Lx8 LINE L1 -525 6948 6754 2 1235 833 326 34 76 chr5 85210577 85210857 -67326402 + Lx8 LINE L1 6951 7228 -245 2 1235 198 0 0 0 chr5 85210857 85210879 -67326380 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2 1235 833 326 34 76 chr5 85210879 85210893 -67326366 + Lx8 LINE L1 7229 7241 -232 2 1235 382 191 19 28 chr5 85210893 85211001 -67326258 - Lx9 LINE L1 -7 7637 7531 2 1235 833 326 34 76 chr5 85211001 85211087 -67326172 + Lx8 LINE L1 7242 7316 -157 2 1235 367 281 99 28 chr5 85211333 85211586 -67325673 + L1MA9 LINE L1 5340 5610 -558 2 1235 278 359 51 0 chr5 85211594 85211711 -67325548 + ID_B1 SINE B4 89 211 -13 2 1235 408 20 0 0 chr5 85211712 85211761 -67325498 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1235 581 315 118 35 chr5 85211767 85212342 -67324917 + L1MA9 LINE L1 5611 6233 -79 2 1235 37 0 0 0 chr5 85213628 85213665 -67323594 + AT_rich Low_complexity Low_complexity 1 37 0 2 1235 237 33 0 0 chr5 85213956 85213986 -67323273 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1235 1061 309 33 98 chr5 85214007 85214498 -67322761 - Lx7 LINE L1 -968 6728 6270 2 1235 25 31 0 0 chr5 85214612 85214644 -67322615 + AT_rich Low_complexity Low_complexity 1 32 0 2 1235 7816 70 1 10 chr5 85215050 85216658 -67320601 - L1Md_F2 LINE L1 -2 6580 4983 2 1235 210 172 14 86 chr5 85217064 85217134 -67320125 + T-rich Low_complexity Low_complexity 5 69 0 3 1235 3778 9 0 0 chr5 85217138 85217565 -67319694 + L1Md_T LINE L1 5160 5586 -297 3 1235 8393 33 1 0 chr5 85217565 85218559 -67318700 + L1Md_T LINE L1 5587 6581 -1 3 1235 216 0 0 0 chr5 85218562 85218586 -67318673 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1235 607 322 24 0 chr5 85218754 85218965 -67318294 - B3 SINE B2 0 216 1 3 1235 261 0 0 0 chr5 85219297 85219326 -67317933 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1235 477 0 0 0 chr5 85219326 85219378 -67317881 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1235 1370 352 78 17 chr5 85219406 85220271 -67316988 - Lx8 LINE L1 -330 7143 6227 3 1235 186 220 0 0 chr5 85221796 85221855 -67315404 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1235 1383 229 47 0 chr5 85222151 85222426 -67314833 + RLTR25B LTR ERVK 3 290 -738 3 1235 322 335 90 31 chr5 85222699 85222955 -67314304 + LTR40a LTR ERVL 25 295 -224 3 1235 26 30 0 0 chr5 85223097 85223130 -67314129 + AT_rich Low_complexity Low_complexity 1 33 0 3 1235 201 269 0 63 chr5 85224081 85224192 -67313067 + A-rich Low_complexity Low_complexity 3 106 0 3 1235 1102 90 0 0 chr5 85224222 85224366 -67312893 - B1_Mm SINE Alu -1 146 3 3 1235 404 98 0 0 chr5 85224834 85224895 -67312364 - B1_Mus1 SINE Alu -85 63 3 3 1235 7172 188 39 12 chr5 85224975 85226597 -67310662 - Lx4B LINE L1 -1 7057 5380 3 1235 2847 120 75 2 chr5 85226593 85227062 -67310197 - Lx2A1 LINE L1 -81 6927 6425 3 1235 4215 163 36 33 chr5 85227059 85227947 -67309312 - Lx4B LINE L1 -473 5404 4514 3 1235 478 245 0 0 chr5 85228490 85228592 -67308667 + ORR1B2 LTR MaLR 258 359 -8 3 1235 1476 298 32 14 chr5 85229699 85230428 -67306831 + L1_Rod LINE L1 2467 3208 -2639 3 1235 7158 46 7 0 chr5 85230622 85231507 -67305752 - L1Md_F2 LINE L1 0 6582 5692 3 1235 3677 124 4 0 chr5 85231679 85232344 -67304915 + L1_Mus4 LINE L1 5285 5951 -685 3 1235 1125 88 0 0 chr5 85232546 85232694 -67304565 - B1_Mus1 SINE Alu 0 148 1 3 1235 1716 39 26 17 chr5 85232728 85232962 -67304297 + L1Md_F3 LINE L1 6347 6582 -2 3 1235 29 110 0 0 chr5 85233409 85233536 -67303723 + AT_rich Low_complexity Low_complexity 1 127 0 3 1235 37 23 0 0 chr5 85233551 85233595 -67303664 + AT_rich Low_complexity Low_complexity 1 44 0 3 1235 22 35 0 0 chr5 85233751 85233780 -67303479 + AT_rich Low_complexity Low_complexity 1 29 0 3 1235 914 360 46 9 chr5 85233939 85234376 -67302883 - Lx8 LINE L1 -249 7224 6772 3 1235 587 171 38 0 chr5 85234379 85234484 -67302775 + RMER6C LTR ERVK 3 111 -579 3 1235 274 152 0 21 chr5 85234469 85234516 -67302743 + MT2B LTR ERVL 182 227 -374 3 1235 241 291 72 48 chr5 85234516 85234552 -67302707 + B1_Mm SINE Alu 18 102 -45 3 1235 1504 195 60 18 chr5 85234578 85234923 -67302336 + RMER6C LTR ERVK 326 690 0 3 1235 276 183 135 0 chr5 85235593 85235697 -67301562 - Lx9 LINE L1 -16 7628 7511 3 1235 245 366 48 24 chr5 85235778 85235904 -67301355 + MER20 DNA MER1_type 90 218 -1 3 1235 2366 112 21 3 chr5 85235909 85236284 -67300975 + L1_Mus3 LINE L1 6252 6633 -5 3 1235 365 305 33 7 chr5 85237481 85237633 -67299626 + Lx6 LINE L1 7265 7420 -40 3 1235 238 368 24 0 chr5 85237922 85238047 -67299212 - Lx9 LINE L1 -1120 6524 6397 3 1235 1105 317 16 40 chr5 85238062 85238515 -67298744 + Lx9 LINE L1 6682 7123 -521 3 1235 227 73 17 52 chr5 85238532 85238590 -67298669 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 3 1235 23 0 0 0 chr5 85238854 85238877 -67298382 + AT_rich Low_complexity Low_complexity 1 23 0 3 1235 943 101 7 54 chr5 85239083 85239230 -67298029 + B1_Mus2 SINE Alu 1 140 -7 3 1235 243 0 0 0 chr5 85239239 85239266 -67297993 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1235 411 83 0 0 chr5 85239505 85239565 -67297694 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 1235 21 0 0 0 chr5 85239585 85239606 -67297653 + AT_rich Low_complexity Low_complexity 1 21 0 3 1235 589 58 23 0 chr5 85241139 85241225 -67296034 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 1235 414 0 0 0 chr5 85241663 85241709 -67295550 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1235 21 57 0 0 chr5 85241716 85241751 -67295508 + AT_rich Low_complexity Low_complexity 1 35 0 3 1235 830 251 65 31 chr5 85241816 85242141 -67295118 + Lx9 LINE L1 7303 7638 -6 3 1235 1147 118 6 0 chr5 85243387 85243556 -67293703 - B2_Mm1t SINE B2 -22 171 2 3 1235 1529 319 115 11 chr5 85243560 85244317 -67292942 - Lx8 LINE L1 -324 7149 6314 3 1235 2056 243 65 45 chr5 85244590 85245189 -67292070 - RMER19C LTR ERVK 0 611 1 3 1235 1295 304 113 21 chr5 85245554 85246069 -67291190 - MER82 DNA MER2_type -54 599 38 3 1235 1825 94 0 0 chr5 85246453 85246739 -67290520 - L1Md_F LINE L1 -4190 1693 1408 3 1235 7182 87 1 4 chr5 85246756 85247731 -67289528 - L1Md_F2 LINE L1 0 6582 5611 3 1235 37898 42 8 3 chr5 85247776 85253987 -67283272 - L1Md_T LINE L1 -2 6583 247 3 1235 7594 124 13 17 chr5 85253987 85255429 -67281830 - L1Md_F LINE L1 -4442 1441 98 3 1235 392 269 27 49 chr5 85255422 85255606 -67281653 - Lx6 LINE L1 -1694 5950 5771 3 1235 651 274 139 53 chr5 85255731 85255912 -67281347 + Lx6 LINE L1 7110 7324 -136 3 1235 804 89 0 0 chr5 85255912 85256035 -67281224 + (TCC)n Simple_repeat Simple_repeat 2 124 0 3 1235 651 274 139 53 chr5 85256035 85256176 -67281083 + Lx6 LINE L1 7325 7460 0 3 1235 455 167 11 0 chr5 85256203 85256293 -67280966 + (CA)n Simple_repeat Simple_repeat 2 92 0 3 1235 312 225 102 62 chr5 85256301 85256429 -67280830 - Lx7 LINE L1 -388 7308 7176 3 1235 645 279 25 8 chr5 85256415 85256623 -67280636 - Lx6 LINE L1 -1653 5807 5566 3 1235 375 363 31 22 chr5 85256598 85256826 -67280433 + Lx8 LINE L1 6800 7029 -444 3 1235 406 350 55 0 chr5 85256836 85257056 -67280203 + Lx8 LINE L1 6933 7164 -309 3 1235 28 29 0 0 chr5 85257382 85257417 -67279842 + AT_rich Low_complexity Low_complexity 1 35 0 3 1235 333 406 6 0 chr5 85257432 85257592 -67279667 - RSINE1 SINE B4 -4 161 1 3 1235 739 179 207 0 chr5 85258535 85258714 -67278545 - B3 SINE B2 0 216 1 3 1235 329 250 35 61 chr5 85259353 85259468 -67277791 - PB1D7 SINE Alu -7 113 2 3 1235 2380 14 0 0 chr5 85259724 85260001 -67277258 - L1_Mm LINE L1 -2089 3794 3518 3 1235 192 326 22 33 chr5 85260205 85260297 -67276962 + L2 LINE L2 2828 2918 -501 3 1235 1682 239 11 8 chr5 85260393 85260752 -67276507 - ORR1B2 LTR MaLR -7 360 1 3 1235 677 256 25 162 chr5 85260877 85261236 -67276023 - Lx6 LINE L1 -1270 6190 5881 3 1235 475 268 142 161 chr5 85261610 85261983 -67275276 - MTE2a LTR MaLR 0 379 14 3 1235 5782 63 14 4 chr5 85262040 85262826 -67274433 + L1Md_A LINE L1 422 1205 -5519 3 1235 1299 26 0 0 chr5 85262823 85262976 -67274283 - L1Md_T LINE L1 -197 6385 6233 3 1235 10138 21 1 5 chr5 85262974 85264486 -67272773 + L1Md_T LINE L1 4703 6208 -374 3 1235 492 78 89 16 chr5 85264486 85264576 -67272683 - RMER19B LTR ERVK -11 891 805 3 1235 635 209 60 0 chr5 85264578 85264736 -67272523 - RMER19B LTR ERVK -571 166 1 3 1235 294 337 102 19 chr5 85264992 85265198 -67272061 + MTE-int LTR MaLR 1345 1567 -13 3 1235 219 190 0 0 chr5 85267205 85267263 -67269996 + GA-rich Low_complexity Low_complexity 1 58 0 3 1235 722 58 10 0 chr5 85267334 85267438 -67269821 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 1235 376 376 58 5 chr5 85267822 85268028 -67269231 - MTE2b LTR MaLR 0 379 163 3 1235 3556 227 74 16 chr5 85268035 85268862 -67268397 - Lx5 LINE L1 -3 7047 6173 3 1235 1101 181 106 6 chr5 85268865 85269185 -67268074 - MYSERV-int LTR ERVK -18 6532 6181 3 1235 357 304 134 110 chr5 85269274 85269729 -67267530 - RMER13A LTR ERVK -60 567 95 3 1235 867 306 90 56 chr5 85269828 85270240 -67267019 + RMER15 LTR ERVL 150 575 0 3 1235 1212 36 12 23 chr5 85270842 85271013 -67266246 + (TTTC)n Simple_repeat Simple_repeat 1 169 0 3 1235 260 414 26 8 chr5 85271095 85271212 -67266047 - RSINE1 SINE B4 -42 123 5 3 1235 895 273 116 18 chr5 85271633 85271969 -67265290 - ORR1D1 LTR MaLR -4 370 2 3 1235 663 266 29 95 chr5 85272960 85273052 -67264207 + Lx6 LINE L1 6645 6737 -723 3 1235 207 69 0 0 chr5 85273052 85273081 -67264178 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3 1235 1552 299 36 31 chr5 85273081 85273736 -67263523 + Lx6 LINE L1 6455 7444 -16 3 1235 259 347 161 7 chr5 85273842 85274147 -67263112 + Lx8 LINE L1 6467 6818 -655 3 1235 228 149 0 0 chr5 85274264 85274311 -67262948 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1235 251 153 0 48 chr5 85274765 85274827 -67262432 - L1_Mur1 LINE L1 -579 5307 5249 3 1235 595 266 41 82 chr5 85275517 85275832 -67261427 - RLTR15 LTR ERVK -57 302 1 3 1235 665 282 33 16 chr5 85276198 85276382 -67260877 + B3 SINE B2 30 216 0 3 1235 240 35 0 0 chr5 85276884 85276913 -67260346 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 3 1235 333 0 0 0 chr5 85277646 85277683 -67259576 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1235 387 141 88 25 chr5 85278267 85278347 -67258912 + HAL1-3A_ME LINE L1 1928 2012 -846 3 1235 341 352 0 0 chr5 85278347 85278455 -67258804 + (CA)n Simple_repeat Simple_repeat 1 108 0 3 1235 536 347 93 0 chr5 85278613 85278838 -67258421 - B4A SINE B4 -45 247 2 3 1235 1102 295 74 79 chr5 85279234 85280073 -67257186 + Lx7 LINE L1 5359 6183 -1513 3 1235 279 114 0 0 chr5 85280073 85280117 -67257142 + (CATG)n Simple_repeat Simple_repeat 4 47 0 3 1235 1102 313 73 45 chr5 85280117 85280346 -67256913 + Lx7 LINE L1 6184 6405 -1291 3 1235 277 281 0 22 chr5 85280352 85280443 -67256816 + Lx7 LINE L1 6705 6793 -903 3 1235 334 359 57 13 chr5 85280692 85280850 -67256409 + MER58A DNA MER1_type 44 208 -16 3 1235 204 143 24 0 chr5 85280955 85280997 -67256262 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1235 272 299 37 7 chr5 85281263 85281398 -67255861 - L1MD LINE L1 -2202 3944 3806 3 1235 381 182 0 0 chr5 85281433 85281532 -67255727 + (CA)n Simple_repeat Simple_repeat 1 99 0 4 1235 245 311 16 25 chr5 85281948 85282070 -67255189 + CT-rich Low_complexity Low_complexity 2 122 0 4 1235 189 0 0 0 chr5 85283247 85283268 -67253991 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1235 28 0 0 0 chr5 85284187 85284215 -67253044 + AT_rich Low_complexity Low_complexity 1 28 0 4 1235 203 234 13 0 chr5 85284460 85284537 -67252722 + (TATG)n Simple_repeat Simple_repeat 4 81 0 4 1235 300 102 0 0 chr5 85285559 85285608 -67251651 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1235 1519 175 30 62 chr5 85285642 85285978 -67251281 + ORR1A2 LTR MaLR 1 325 -2 4 1235 237 270 0 26 chr5 85286143 85286219 -67251040 + CT-rich Low_complexity Low_complexity 2 75 0 4 1235 2514 301 78 28 chr5 85286382 85287362 -67249897 - Lx9 LINE L1 -288 7356 6333 4 1235 384 22 0 0 chr5 85287362 85287407 -67249852 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 4 1235 2514 301 78 28 chr5 85287407 85287488 -67249771 - Lx9 LINE L1 -1312 6332 6242 4 1235 527 135 10 0 chr5 85288237 85288333 -67248926 + (TA)n Simple_repeat Simple_repeat 1 97 0 4 1235 23 33 0 0 chr5 85288483 85288513 -67248746 + AT_rich Low_complexity Low_complexity 1 30 0 4 1235 614 347 74 43 chr5 85288513 85289160 -67248099 - Lx9 LINE L1 -319 7325 6659 4 1235 244 385 41 14 chr5 85289961 85290106 -67247153 - B3A SINE B2 0 198 50 4 1235 394 298 79 24 chr5 85290602 85290729 -67246530 - Lx8 LINE L1 -814 6659 6526 4 1235 7501 122 25 21 chr5 85291239 85291681 -67245578 - MERVK26-int LTR ERVK -3516 3403 2951 4 1235 189 0 0 0 chr5 85291681 85291702 -67245557 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1235 7501 122 25 21 chr5 85291702 85292416 -67244843 - MERVK26-int LTR ERVK -3969 2950 2244 4 1235 441 158 26 131 chr5 85292417 85292570 -67244689 - L1_Mus3 LINE L1 -5 6633 6497 4 1235 13473 108 31 17 chr5 85292570 85294557 -67242702 - MERVK26-int LTR ERVK -4675 2244 230 4 1235 2112 137 23 11 chr5 85294553 85294907 -67242352 - MERVK26-int LTR ERVK -5804 1115 758 4 1235 731 245 85 35 chr5 85294907 85295214 -67242045 - RLTR26 LTR ERVK -606 300 1 4 1235 304 351 21 56 chr5 85295938 85296080 -67241179 - B4 SINE B4 -75 217 81 4 1235 1208 91 6 0 chr5 85296106 85296282 -67240977 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 4 1235 254 288 51 0 chr5 85296293 85296352 -67240907 - B4A SINE B4 -218 74 13 4 1235 552 15 0 0 chr5 85297440 85297505 -67239754 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1235 24 0 0 0 chr5 85297555 85297579 -67239680 + AT_rich Low_complexity Low_complexity 1 24 0 4 1235 323 370 0 33 chr5 85297622 85297773 -67239486 - RSINE1 SINE B4 -19 146 1 4 1235 485 354 63 49 chr5 85297907 85298119 -67239140 - RLTR20D LTR ERVK -19 549 323 4 1235 460 0 33 0 chr5 85298119 85298179 -67239080 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1235 485 354 63 49 chr5 85298179 85298316 -67238943 - RLTR20D LTR ERVK -246 322 196 4 1235 1184 21 0 58 chr5 85298321 85298887 -67238372 + (TTC)n Simple_repeat Simple_repeat 1 532 0 4 1235 1523 160 54 19 chr5 85298894 85299207 -67238052 - Lx3B LINE L1 -6 6967 6644 4 1235 557 353 11 6 chr5 85299229 85299403 -67237856 + B3 SINE B2 1 175 -41 4 1235 219 103 0 0 chr5 85300339 85300378 -67236881 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1235 284 342 88 58 chr5 85302255 85302460 -67234799 + MER20 DNA MER1_type 8 218 -1 4 1235 219 139 0 0 chr5 85302592 85302628 -67234631 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 1235 3140 43 5 25 chr5 85303061 85303462 -67233797 - MTA_Mm LTR MaLR 0 396 4 4 1235 504 32 0 0 chr5 85303483 85303545 -67233714 + (GAAA)n Simple_repeat Simple_repeat 3 64 0 4 1235 364 63 31 16 chr5 85304001 85304065 -67233194 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 4 1235 25 31 0 0 chr5 85304074 85304106 -67233153 + AT_rich Low_complexity Low_complexity 1 32 0 4 1235 795 340 38 9 chr5 85304612 85304930 -67232329 + MTE2b LTR MaLR 1 327 -52 4 1235 958 124 14 0 chr5 85305120 85305265 -67231994 + B1_Mm SINE Alu 1 147 0 4 1235 481 65 54 27 chr5 85305268 85305379 -67231880 + (CAAAAA)n Simple_repeat Simple_repeat 1 114 0 4 1235 24 0 0 0 chr5 85305691 85305715 -67231544 + AT_rich Low_complexity Low_complexity 1 24 0 4 1235 1106 216 60 75 chr5 85305718 85306049 -67231210 - Lx4A LINE L1 0 7058 6733 4 1235 816 99 25 0 chr5 85306094 85306215 -67231044 + B2_Mm2 SINE B2 5 128 -67 4 1235 614 143 0 0 chr5 85306253 85306351 -67230908 + Lx2 LINE L1 5326 5423 -460 4 1235 3769 160 22 28 chr5 85306351 85307092 -67230167 + RMER17A LTR ERVK 1 736 -15 4 1235 3239 158 29 17 chr5 85307121 85307479 -67229780 + Lx2 LINE L1 5418 5769 -114 4 1235 2885 74 0 51 chr5 85307479 85307893 -67229366 + L1_Mus2 LINE L1 6174 6566 0 4 1235 3239 160 65 8 chr5 85307893 85308555 -67228704 + Lx2 LINE L1 5770 6887 -110 4 1235 22 35 0 0 chr5 85308559 85308588 -67228671 + AT_rich Low_complexity Low_complexity 1 29 0 4 1235 21 36 0 0 chr5 85308930 85308958 -67228301 + AT_rich Low_complexity Low_complexity 1 28 0 4 1235 2156 111 84 0 chr5 85309652 85309996 -67227263 + Lx3A LINE L1 6603 6975 -6 4 1235 21 0 0 0 chr5 85309997 85310018 -67227241 + AT_rich Low_complexity Low_complexity 1 21 0 4 1235 189 410 26 37 chr5 85310526 85310716 -67226543 - MIRb SINE MIR -64 204 17 4 1235 914 359 92 7 chr5 85311691 85312311 -67224948 - Lx8 LINE L1 -136 7337 6665 4 1235 2129 269 68 24 chr5 85312356 85313093 -67224166 + Lx7 LINE L1 5794 6562 -1134 4 1235 407 291 0 80 chr5 85313131 85313257 -67224002 + PB1D9 SINE Alu 1 115 -5 4 1235 283 333 105 13 chr5 85313257 85313278 -67223981 + B4A SINE B4 86 246 -46 4 1235 426 20 0 0 chr5 85313353 85313404 -67223855 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1235 1772 152 27 10 chr5 85313507 85313807 -67223452 + Lx3_Mus LINE L1 6693 6997 -12 4 1235 29 28 0 0 chr5 85313817 85313853 -67223406 + AT_rich Low_complexity Low_complexity 1 36 0 4 1235 24 32 0 0 chr5 85314336 85314367 -67222892 + AT_rich Low_complexity Low_complexity 1 31 0 4 1235 274 355 55 28 chr5 85314480 85314625 -67222634 - B3A SINE B2 0 198 50 4 1235 24 0 0 0 chr5 85315632 85315656 -67221603 + AT_rich Low_complexity Low_complexity 1 24 0 4 1235 3596 165 52 10 chr5 85315658 85316344 -67220915 + L1_Mus1 LINE L1 404 1118 -5498 4 1235 26407 115 3 7 chr5 85316347 85321190 -67216069 + L1_Mus1 LINE L1 1747 6567 0 4 1235 25 31 0 0 chr5 85321192 85321224 -67216035 + AT_rich Low_complexity Low_complexity 1 32 0 4 1235 4488 107 105 11 chr5 85321269 85322022 -67215237 + L1_Mur1 LINE L1 4480 5303 -583 4 1235 2477 42 0 6 chr5 85322022 85322334 -67214925 + L1Md_F3 LINE L1 6275 6584 0 4 1235 4363 141 22 3 chr5 85322334 85323077 -67214182 + Lx3_Mus LINE L1 5738 6529 -480 4 1235 22 35 0 0 chr5 85324235 85324264 -67212995 + AT_rich Low_complexity Low_complexity 1 29 0 4 1235 408 303 52 96 chr5 85324271 85324406 -67212853 - RSINE1 SINE B4 -19 146 18 4 1235 561 175 0 0 chr5 85324627 85324764 -67212495 + CT-rich Low_complexity Low_complexity 1 137 0 4 1235 194 62 31 0 chr5 85324781 85324813 -67212446 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 4 1235 215 193 0 34 chr5 85324817 85324876 -67212383 + (CAGAGA)n Simple_repeat Simple_repeat 4 60 0 4 1235 434 217 0 9 chr5 85324877 85324993 -67212266 + (CA)n Simple_repeat Simple_repeat 2 116 0 4 1235 296 48 24 0 chr5 85325046 85325088 -67212171 + (ATTG)n Simple_repeat Simple_repeat 1 43 0 4 1235 22 35 0 0 chr5 85325526 85325555 -67211704 + AT_rich Low_complexity Low_complexity 1 29 0 4 1235 244 355 43 0 chr5 85325746 85325884 -67211375 + MamRep1879 DNA hAT? 10 153 -63 4 1235 29 28 0 0 chr5 85327277 85327313 -67209946 + AT_rich Low_complexity Low_complexity 1 36 0 4 154 6809 184 31 4 chr5 85327371 85328281 -67208978 + L1_Mur1 LINE L1 2556 3485 -2401 4 1236 411 21 0 0 chr5 85328281 85328329 -67208930 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 4 1236 6809 184 31 4 chr5 85328329 85328847 -67208412 + L1_Mur1 LINE L1 3486 4021 -1865 4 1236 544 303 66 22 chr5 85328857 85329151 -67208108 - MTD LTR MaLR -69 350 12 4 1236 350 248 57 9 chr5 85329165 85329271 -67207988 - MTD-int LTR MaLR 0 1258 1148 4 1236 22 35 0 0 chr5 85329541 85329570 -67207689 + AT_rich Low_complexity Low_complexity 1 29 0 4 1236 2193 182 33 0 chr5 85330504 85330932 -67206327 - Lx2 LINE L1 -8 6989 6548 4 1236 1070 241 33 22 chr5 85330950 85331222 -67206037 - RMER19C LTR ERVK -336 275 1 4 1236 594 292 60 98 chr5 85331945 85332189 -67205070 + MTD LTR MaLR 9 258 -161 4 1236 261 0 0 0 chr5 85332189 85332218 -67205041 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 4 1236 594 292 60 98 chr5 85332218 85332288 -67204971 + MTD LTR MaLR 259 311 -108 4 1236 342 220 125 105 chr5 85332331 85332511 -67204748 + MTC LTR MaLR 235 414 -7 4 1236 23 33 0 0 chr5 85332602 85332632 -67204627 + AT_rich Low_complexity Low_complexity 1 30 0 4 1236 351 259 207 14 chr5 85332832 85332977 -67204282 - B3 SINE B2 -21 174 2 4 1236 21 0 0 0 chr5 85334418 85334439 -67202820 + AT_rich Low_complexity Low_complexity 1 21 0 4 1236 290 57 0 0 chr5 85334641 85334676 -67202583 + MurERV4_19-int LTR ERVK 2958 2992 -2788 4 1236 931 184 0 135 chr5 85334801 85334923 -67202336 - MurERV4_19-int LTR ERVK -2817 2963 2856 4 1236 1608 28 0 0 chr5 85334923 85335105 -67202154 - B2_Mm1a SINE B2 -10 183 2 4 1236 931 184 0 135 chr5 85335105 85335227 -67202032 - MurERV4_19-int LTR ERVK -2925 2855 2752 4 1236 1335 57 161 0 chr5 85335232 85335425 -67201834 - L1Md_F2 LINE L1 0 6582 6359 4 1236 397 190 13 0 chr5 85335425 85335504 -67201755 + L1Md_A LINE L1 142 221 -6503 4 1236 2454 165 29 16 chr5 85335509 85335649 -67201610 - MurERV4_19-int LTR ERVK -3021 2759 2609 4 1236 300 53 0 0 chr5 85335649 85335687 -67201572 + (TTG)n Simple_repeat Simple_repeat 2 39 0 4 1236 2454 165 29 16 chr5 85335687 85335995 -67201264 - MurERV4_19-int LTR ERVK -3172 2608 2306 4 1236 1067 260 12 28 chr5 85335995 85336305 -67200954 - RMER19C LTR ERVK -240 371 1 4 1236 23 54 0 0 chr5 85336426 85336463 -67200796 + AT_rich Low_complexity Low_complexity 1 37 0 4 1236 459 0 0 0 chr5 85336478 85336529 -67200730 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1236 1781 358 56 7 chr5 85336743 85337794 -67199465 + Lx8 LINE L1 6129 7231 -242 4 1236 2722 113 5 9 chr5 85337849 85338270 -67198989 - L1_Mm LINE L1 -478 5405 4987 4 1236 7171 101 4 0 chr5 85338280 85339972 -67197287 - L1_Mus1 LINE L1 -1 6566 4868 4 1236 287 123 0 0 chr5 85339971 85340018 -67197241 + L1_Mur3 LINE L1 4851 4918 -1228 5 1236 1856 241 99 24 chr5 85340008 85340668 -67196591 - RMER1B Other Other -200 866 68 5 1236 361 280 158 58 chr5 85340838 85341130 -67196129 - L1MCb LINE L1 -5669 376 56 5 1236 207 0 0 0 chr5 85341233 85341256 -67196003 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1236 22 0 0 0 chr5 85341256 85341278 -67195981 + AT_rich Low_complexity Low_complexity 1 22 0 5 1236 366 375 44 48 chr5 85341517 85341766 -67195493 - B4A SINE B4 -1 291 44 5 1236 21 82 0 0 chr5 85342326 85342375 -67194884 + AT_rich Low_complexity Low_complexity 1 49 0 5 1236 201 338 14 0 chr5 85342862 85342936 -67194323 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1236 5348 57 6 0 chr5 85344517 85345197 -67192062 + L1Md_F2 LINE L1 5887 6570 -12 5 1236 23 33 0 0 chr5 85345352 85345382 -67191877 + AT_rich Low_complexity Low_complexity 1 30 0 5 1236 474 18 0 0 chr5 85346492 85346547 -67190712 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1236 249 33 0 0 chr5 85347447 85347477 -67189782 + (TA)n Simple_repeat Simple_repeat 2 31 0 5 1236 450 0 0 0 chr5 85347477 85347526 -67189733 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1236 1034 80 0 0 chr5 85347528 85347666 -67189593 - B1_Mm SINE Alu -7 140 3 5 1236 271 394 71 25 chr5 85348679 85348877 -67188382 - LTR16A LTR ERVL -221 230 24 5 1236 890 161 12 0 chr5 85349055 85349223 -67188036 + CT-rich Low_complexity Low_complexity 2 171 0 5 1236 3876 40 2 0 chr5 85349598 85350067 -67187192 - L1Md_A LINE L1 0 6582 6113 5 1236 22 70 0 0 chr5 85350582 85350625 -67186634 + AT_rich Low_complexity Low_complexity 1 43 0 5 1236 25 0 0 0 chr5 85351301 85351326 -67185933 + AT_rich Low_complexity Low_complexity 1 25 0 5 1236 10646 66 2 7 chr5 85351962 85354064 -67183195 - L1Md_F2 LINE L1 -12 6570 4477 5 1236 1925 221 144 13 chr5 85354095 85354176 -67183083 - Lx6 LINE L1 -478 6982 6879 5 1236 450 0 0 0 chr5 85354176 85354226 -67183033 + (TC)n Simple_repeat Simple_repeat 1 50 0 5 1236 186 43 0 0 chr5 85354226 85354249 -67183010 + (TG)n Simple_repeat Simple_repeat 1 23 0 5 1236 1925 221 144 13 chr5 85354249 85354637 -67182622 - Lx6 LINE L1 -582 6878 6451 5 1236 315 336 103 0 chr5 85354641 85354748 -67182511 + Lx6 LINE L1 7000 7117 -343 5 1236 334 190 34 17 chr5 85354780 85354898 -67182361 + (TCTA)n Simple_repeat Simple_repeat 3 122 0 5 1236 1079 276 51 10 chr5 85354898 85355209 -67182050 + Lx6 LINE L1 7133 7456 -4 5 1236 5792 243 84 35 chr5 85355227 85356999 -67180260 - Lx7 LINE L1 -156 7540 5677 5 1236 2063 201 208 21 chr5 85356999 85357513 -67179746 - RMER19C LTR ERVK 0 611 2 5 1236 5792 243 84 35 chr5 85357513 85357602 -67179657 - Lx7 LINE L1 -2020 5676 5588 5 1236 272 231 15 23 chr5 85357828 85357854 -67179405 + ORR1B1-int LTR MaLR 623 647 -862 5 1236 959 63 8 0 chr5 85357854 85357981 -67179278 + B1_Mus1 SINE Alu 1 128 -20 5 1236 218 27 0 98 chr5 85357981 85358022 -67179237 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 5 1236 249 59 58 19 chr5 85358024 85358076 -67179183 + (GAAA)n Simple_repeat Simple_repeat 2 55 0 5 1236 23 0 0 0 chr5 85358209 85358232 -67179027 + AT_rich Low_complexity Low_complexity 1 23 0 5 1236 1607 101 107 15 chr5 85359229 85359491 -67177768 - L1_Mur1 LINE L1 -355 5531 5246 5 1236 779 79 0 9 chr5 85360000 85360115 -67177144 - L1_Mur1 LINE L1 -624 5262 5149 5 1236 8844 115 11 11 chr5 85360114 85361588 -67175671 + Lx3A LINE L1 5509 6981 0 5 1236 22 0 0 0 chr5 85361590 85361612 -67175647 + AT_rich Low_complexity Low_complexity 1 22 0 5 1236 189 162 0 0 chr5 85361621 85361644 -67175615 + polypyrimidine Low_complexity Low_complexity 17 39 0 5 1236 1196 89 0 6 chr5 85361644 85361825 -67175434 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 5 1236 189 162 0 0 chr5 85361825 85361838 -67175421 + polypyrimidine Low_complexity Low_complexity 4 16 0 5 1236 1595 182 124 70 chr5 85361950 85362394 -67174865 - Lx3C LINE L1 -4 6972 6505 5 1236 1289 131 0 0 chr5 85362393 85362591 -67174668 - Lx4B LINE L1 -1182 5876 5679 5 1236 504 0 0 0 chr5 85363799 85363855 -67173404 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1236 405 0 0 0 chr5 85364057 85364102 -67173157 + (TA)n Simple_repeat Simple_repeat 2 46 0 5 1236 378 0 0 0 chr5 85365850 85365892 -67171367 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1236 294 73 0 0 chr5 85366102 85366143 -67171116 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 5 1236 15984 76 2 4 chr5 85366417 85368627 -67168632 + L1_Mm LINE L1 1520 3725 -2158 5 1236 35255 43 2 9 chr5 85368627 85373783 -67163476 + L1Md_T LINE L1 475 5586 -297 5 1236 8008 55 0 0 chr5 85373784 85374777 -67162482 + L1Md_T LINE L1 5588 6580 -2 5 1236 1070 77 0 0 chr5 85374778 85374921 -67162338 + L1_Mm LINE L1 3716 3858 -2025 5 1236 7973 47 2 0 chr5 85374938 85375918 -67161341 + L1Md_F2 LINE L1 5587 6568 -14 5 1236 22 0 0 0 chr5 85375918 85375940 -67161319 + AT_rich Low_complexity Low_complexity 1 22 0 5 1236 26 74 0 0 chr5 85376606 85376660 -67160599 + AT_rich Low_complexity Low_complexity 1 54 0 5 1236 3485 80 8 10 chr5 85376839 85377320 -67159939 - L1_Mus2 LINE L1 -1 6565 6086 5 1236 495 0 0 0 chr5 85377330 85377385 -67159874 + (TA)n Simple_repeat Simple_repeat 1 55 0 5 1236 1540 243 81 21 chr5 85377388 85377854 -67159405 - Lx9 LINE L1 -228 7416 6785 5 1236 21 100 0 0 chr5 85378048 85378118 -67159141 + AT_rich Low_complexity Low_complexity 1 70 0 5 1236 658 286 99 37 chr5 85378172 85378415 -67158844 - Lx5 LINE L1 -1 7049 6792 5 1236 1484 236 13 10 chr5 85378410 85378723 -67158536 + Lx5 LINE L1 6511 6824 -226 5 1236 328 253 476 12 chr5 85378817 85378983 -67158276 - Lx5 LINE L1 -546 6504 6262 5 1236 23 33 0 0 chr5 85378986 85379016 -67158243 + AT_rich Low_complexity Low_complexity 1 30 0 5 1236 27 0 0 0 chr5 85380045 85380072 -67157187 + AT_rich Low_complexity Low_complexity 1 27 0 5 1236 268 219 47 9 chr5 85380220 85380326 -67156933 + (TA)n Simple_repeat Simple_repeat 1 110 0 5 1236 441 122 0 0 chr5 85380463 85380537 -67156722 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1236 26 50 0 0 chr5 85381624 85381664 -67155595 + AT_rich Low_complexity Low_complexity 1 40 0 5 1236 353 39 0 19 chr5 85381764 85381816 -67155443 + (TTTTA)n Simple_repeat Simple_repeat 4 54 0 5 1236 2900 156 29 2 chr5 85381827 85382316 -67154943 - Lx3_Mus LINE L1 -20 6989 6488 5 1236 690 47 0 0 chr5 85382882 85382968 -67154291 + (TG)n Simple_repeat Simple_repeat 2 87 0 5 1236 380 244 0 38 chr5 85382986 85383118 -67154141 + Lx9 LINE L1 7513 7639 -5 5 1236 1674 230 110 42 chr5 85383237 85383718 -67153541 + RLTR12B LTR ERVK 1 514 -14 5 1236 4171 188 15 11 chr5 85384331 85384788 -67152471 + L1_Mur1 LINE L1 4888 5355 -531 5 1236 2318 64 13 6 chr5 85384788 85385104 -67152155 + L1Md_F2 LINE L1 6263 6580 -2 5 1236 4171 188 15 11 chr5 85385104 85385446 -67151813 + L1_Mur1 LINE L1 5356 5690 -196 5 1236 271 265 140 31 chr5 85386538 85386734 -67150525 - Lx7 LINE L1 -17 7679 7487 5 1236 576 29 0 0 chr5 85386744 85386814 -67150445 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1236 423 0 0 0 chr5 85386814 85386860 -67150399 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1236 499 330 18 32 chr5 85386866 85387151 -67150108 - Lx7 LINE L1 -397 7299 7019 5 1236 6577 200 19 10 chr5 85387185 85388762 -67148497 - Lx3C LINE L1 -2 6974 5394 5 1236 3831 196 27 24 chr5 85388923 85390074 -67147185 + L1_Mur1 LINE L1 834 1988 -3898 5 1236 768 351 76 30 chr5 85390125 85390654 -67146605 - Lx8 LINE L1 -10 7463 6911 5 1236 263 317 0 0 chr5 85390846 85390906 -67146353 - RSINE1 SINE B4 -102 63 4 5 1236 28 0 0 0 chr5 85391167 85391195 -67146064 + AT_rich Low_complexity Low_complexity 1 28 0 5 1236 1866 100 196 25 chr5 85391310 85391418 -67145841 + L1_Mus3 LINE L1 6206 6316 -322 5 1236 378 39 64 13 chr5 85391418 85391496 -67145763 + (CAA)n Simple_repeat Simple_repeat 2 83 0 5 1236 1866 100 196 25 chr5 85391496 85391755 -67145504 + L1_Mus3 LINE L1 6317 6635 -3 5 1236 1799 212 53 23 chr5 85394708 85395143 -67142116 - RMER6C LTR ERVK 0 690 243 5 1236 345 47 0 0 chr5 85395183 85395226 -67142033 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 5 1236 781 162 7 7 chr5 85395226 85395381 -67141878 + CT-rich Low_complexity Low_complexity 1 155 0 5 1236 857 179 0 11 chr5 85395381 85395562 -67141697 - Lx LINE L1 -1 6653 6475 5 1236 316 307 19 19 chr5 85395707 85395810 -67141449 - RLTR11A LTR ERVK -231 297 195 5 1236 1325 326 112 24 chr5 85395810 85396745 -67140514 - Lx8 LINE L1 -216 7257 6241 5 1236 228 35 0 0 chr5 85396900 85396929 -67140330 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1236 390 42 0 0 chr5 85397461 85397509 -67139750 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1236 311 226 55 36 chr5 85397943 85398090 -67139169 + MLT1A0 LTR MaLR 218 393 -15 5 1236 472 220 185 0 chr5 85400000 85400173 -67137086 + Lx9 LINE L1 7437 7641 -3 5 1236 35 83 0 0 chr5 85400275 85400359 -67136900 + AT_rich Low_complexity Low_complexity 1 84 0 5 1236 2821 277 16 1 chr5 85400359 85401045 -67136214 - Lx6 LINE L1 -2 7458 6763 5 1236 4957 169 43 20 chr5 85401045 85401976 -67135283 - RMER17B LTR ERVK -6 952 1 5 1236 2038 237 40 14 chr5 85402017 85402406 -67134853 - Lx6 LINE L1 -724 6736 6344 5 1236 387 0 0 0 chr5 85402406 85402449 -67134810 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1236 2038 237 40 14 chr5 85402449 85402556 -67134703 - Lx6 LINE L1 -1117 6343 6227 5 1236 32497 76 5 9 chr5 85402733 85407777 -67129482 + L1Md_F3 LINE L1 570 5586 -297 5 1236 8117 41 1 7 chr5 85407778 85408779 -67128480 + L1Md_F3 LINE L1 5588 6582 -2 5 1236 265 130 22 0 chr5 85408785 85408831 -67128428 - Lx6 LINE L1 -1304 6156 6110 5 1236 594 63 0 0 chr5 85408832 85408911 -67128348 + (TC)n Simple_repeat Simple_repeat 2 80 0 5 1236 1750 211 85 13 chr5 85409050 85409439 -67127820 - RMER1B Other Other -24 1042 626 5 1236 1118 251 119 18 chr5 85409461 85409798 -67127461 - RMER1B Other Other -651 415 45 5 1236 989 267 97 60 chr5 85410671 85411073 -67126186 + MTD LTR MaLR 3 419 0 5 1236 217 295 130 28 chr5 85411192 85411236 -67126023 - B4A SINE B4 -173 119 70 5 1236 429 20 0 0 chr5 85411236 85411286 -67125973 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1236 333 0 0 0 chr5 85411286 85411322 -67125937 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1236 217 295 130 28 chr5 85411322 85411384 -67125875 - B4A SINE B4 -223 69 2 5 1236 324 127 0 0 chr5 85412056 85412111 -67125148 + (CCTCG)n Simple_repeat Simple_repeat 4 58 0 5 1236 199 72 0 45 chr5 85412688 85412732 -67124527 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 5 1236 969 124 0 0 chr5 85412877 85413014 -67124245 + B1_Mm SINE Alu 1 137 -10 6 1236 207 0 0 0 chr5 85413014 85413037 -67124222 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1236 402 134 0 0 chr5 85413057 85413124 -67124135 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 6 1236 31866 86 5 15 chr5 85413570 85418710 -67118549 + L1Md_F2 LINE L1 506 5586 -297 6 1236 7935 54 2 0 chr5 85418710 85419699 -67117560 + L1Md_F2 LINE L1 5587 6577 -5 6 1236 22 56 0 0 chr5 85419722 85419758 -67117501 + AT_rich Low_complexity Low_complexity 1 36 0 6 1236 23 78 0 0 chr5 85419842 85419893 -67117366 + AT_rich Low_complexity Low_complexity 1 51 0 6 1236 1202 86 0 22 chr5 85420327 85420506 -67116753 - L1Md_F2 LINE L1 -13 6569 6395 6 1236 303 286 8 45 chr5 85421052 85421184 -67116075 - L1M2 LINE L1 -586 5726 5600 6 1236 22 0 0 0 chr5 85423284 85423306 -67113953 + AT_rich Low_complexity Low_complexity 1 22 0 6 1236 507 345 96 29 chr5 85423796 85424068 -67113191 - B4A SINE B4 0 292 3 6 1236 879 137 50 7 chr5 85424101 85424241 -67113018 + B1_Mus1 SINE Alu 2 147 -1 6 1236 3710 75 0 0 chr5 85424564 85425046 -67112213 + L1Md_T LINE L1 6100 6581 -1 6 1236 2911 66 32 7 chr5 85425552 85425963 -67111296 - BGLII LTR ERVK 0 421 1 6 1236 261 83 0 0 chr5 85426020 85426056 -67111203 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 6 1236 206 75 50 0 chr5 85426406 85426446 -67110813 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 6 1236 221 98 24 0 chr5 85427858 85427899 -67109360 + (GAAAA)n Simple_repeat Simple_repeat 5 46 0 6 1236 231 280 0 0 chr5 85427945 85427995 -67109264 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1236 1254 279 88 50 chr5 85427998 85428793 -67108466 + L1M2 LINE L1 4261 5085 -1058 6 1236 696 275 112 72 chr5 85428908 85429434 -67107825 + L1_Mur3 LINE L1 5302 5848 -32 6 1236 301 300 23 0 chr5 85429463 85429593 -67107666 + CT-rich Low_complexity Low_complexity 2 134 0 6 1236 870 232 18 9 chr5 85429665 85429887 -67107372 - URR1B DNA MER1_type -1 224 1 6 1236 198 0 0 0 chr5 85429951 85429973 -67107286 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1236 21 36 0 0 chr5 85430450 85430478 -67106781 + AT_rich Low_complexity Low_complexity 1 28 0 6 1236 360 0 0 0 chr5 85430770 85430810 -67106449 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1236 619 208 224 0 chr5 85430856 85431039 -67106220 - URR1B DNA MER1_type 0 225 2 6 1236 237 132 0 0 chr5 85431865 85431903 -67105356 + (CCA)n Simple_repeat Simple_repeat 1 38 0 6 1236 1756 233 55 31 chr5 85432150 85432699 -67104560 + L1_Rod LINE L1 1971 2532 -3315 6 1236 686 242 88 59 chr5 85432740 85432786 -67104473 + L1_Rod LINE L1 3228 3280 -2567 6 1236 1569 58 0 5 chr5 85432786 85432995 -67104264 + L1Md_F3 LINE L1 6377 6584 0 6 1236 686 242 88 59 chr5 85432995 85433369 -67103890 + L1_Rod LINE L1 3281 3660 -2187 6 1236 1015 233 59 52 chr5 85433389 85433661 -67103598 + Lx5 LINE L1 6776 7049 -1 6 1236 301 257 106 35 chr5 85433661 85433774 -67103485 + L1M2 LINE L1 3677 3797 -2346 6 1236 1482 135 15 15 chr5 85433790 85434054 -67103205 - L1_Mur1 LINE L1 -1191 4695 4432 6 1236 234 158 0 0 chr5 85434047 85434085 -67103174 + L1_Mur1 LINE L1 5073 5110 -776 6 1236 2672 140 28 0 chr5 85434127 85434563 -67102696 + L1_Mur1 LINE L1 5115 5562 -324 6 1236 817 182 22 11 chr5 85434563 85434741 -67102518 + Lx3C LINE L1 6790 6969 -7 6 1236 27 0 0 0 chr5 85434752 85434779 -67102480 + AT_rich Low_complexity Low_complexity 1 27 0 6 1236 260 327 18 0 chr5 85434799 85434909 -67102350 + L1_Mur3 LINE L1 1017 1128 -6584 6 1236 455 370 23 28 chr5 85434998 85435212 -67102047 - B4 SINE B4 -78 214 2 6 1236 28 29 0 0 chr5 85436125 85436160 -67101099 + AT_rich Low_complexity Low_complexity 1 35 0 6 1236 22 35 0 0 chr5 85436326 85436355 -67100904 + AT_rich Low_complexity Low_complexity 1 29 0 6 1236 251 348 42 42 chr5 85436393 85436545 -67100714 - RMER12 LTR ERVK -388 934 782 6 1236 183 80 0 0 chr5 85436545 85436570 -67100689 + (CATA)n Simple_repeat Simple_repeat 4 28 0 6 1236 251 348 42 42 chr5 85436570 85436606 -67100653 - RMER12 LTR ERVK -541 781 746 6 1236 1321 347 56 55 chr5 85436637 85437542 -67099717 - Lx9 LINE L1 -213 7431 6526 6 1236 232 307 69 49 chr5 85437749 85437893 -67099366 + MLT2B1 LTR ERVL 381 527 -40 6 1236 303 121 0 0 chr5 85437898 85437956 -67099303 + (TA)n Simple_repeat Simple_repeat 1 58 0 6 1236 387 388 61 66 chr5 85438123 85438485 -67098774 + MLT2F LTR ERVL 237 596 -67 6 1236 471 113 0 0 chr5 85438644 85438715 -67098544 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1236 3394 103 38 10 chr5 85438933 85439364 -67097895 - Lx3A LINE L1 -999 5982 5567 6 1236 3387 61 0 7 chr5 85439364 85439795 -67097464 - L1_Mus1 LINE L1 0 6567 6140 6 1236 3394 107 24 50 chr5 85439795 85440005 -67097254 - Lx3A LINE L1 -320 5566 5358 6 1236 21 71 0 0 chr5 85440011 85440053 -67097206 + AT_rich Low_complexity Low_complexity 1 42 0 6 1236 373 262 38 32 chr5 85440088 85440258 -67097001 + B3 SINE B2 27 198 0 6 1236 288 0 0 0 chr5 85440477 85440509 -67096750 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 6 1236 488 308 0 71 chr5 85440515 85440655 -67096604 - RSINE1 SINE B4 -33 132 3 6 1236 414 277 162 14 chr5 85442013 85442309 -67094950 - L1MA5 LINE L1 -31 6269 5930 6 1236 3724 152 111 9 chr5 85442605 85443289 -67093970 + Lx4A LINE L1 6303 7056 -2 6 1236 465 97 0 0 chr5 85443329 85443401 -67093858 + (TTCC)n Simple_repeat Simple_repeat 2 73 0 6 1236 705 56 0 0 chr5 85443401 85443491 -67093768 + (TC)n Simple_repeat Simple_repeat 2 91 0 6 1236 204 231 0 0 chr5 85444079 85444131 -67093128 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 6 1236 397 180 266 25 chr5 85445280 85445479 -67091780 - Lx9 LINE L1 -3 7641 7395 6 1236 994 297 69 71 chr5 85445547 85446155 -67091104 + Lx9 LINE L1 6867 7473 -171 6 1236 245 86 16 49 chr5 85446415 85446476 -67090783 + (TAA)n Simple_repeat Simple_repeat 2 60 0 6 1236 691 59 10 10 chr5 85447102 85447204 -67090055 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 6 1236 1242 107 0 0 chr5 85447776 85448076 -67089183 + (TCTA)n Simple_repeat Simple_repeat 1 300 0 6 1236 4075 136 52 18 chr5 85448102 85448781 -67088478 - Lx3C LINE L1 -7 6969 6268 6 1236 184 212 30 0 chr5 85449959 85450025 -67087234 + (TA)n Simple_repeat Simple_repeat 1 68 0 6 1236 6801 50 6 0 chr5 85450625 85451762 -67085497 - L1Md_F2 LINE L1 -405 6177 5036 6 1236 938 46 8 0 chr5 85451763 85451893 -67085366 + L1Md_T LINE L1 6451 6581 -1 6 1236 21 57 0 0 chr5 85452268 85452303 -67084956 + AT_rich Low_complexity Low_complexity 1 35 0 6 1236 1345 323 62 33 chr5 85452463 85452644 -67084615 + Lx6 LINE L1 6795 6982 -478 6 1236 272 27 27 0 chr5 85452644 85452681 -67084578 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6 1236 1345 323 62 33 chr5 85452681 85453142 -67084117 + Lx6 LINE L1 6983 7456 -4 6 1236 217 109 18 18 chr5 85453499 85453555 -67083704 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 6 1236 301 310 84 48 chr5 85453613 85453864 -67083395 - L1M2 LINE L1 -524 5767 5508 6 1236 22 56 0 0 chr5 85455361 85455397 -67081862 + AT_rich Low_complexity Low_complexity 1 36 0 6 1236 1645 107 12 0 chr5 85457440 85457683 -67079576 - Lx LINE L1 -565 6089 5844 6 1236 211 150 0 24 chr5 85457729 85457770 -67079489 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1236 217 188 12 12 chr5 85457823 85457904 -67079355 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1236 7016 38 1 0 chr5 85458015 85458856 -67078403 - L1Md_T LINE L1 -2 6580 5739 6 154 5472 14 2 0 chr5 85458856 85459497 -67077762 + L1_Mm LINE L1 3748 4389 -1494 6 1237 1013 198 97 15 chr5 85459497 85459636 -67077623 - Lx9 LINE L1 -6 7638 7477 6 1237 2882 145 132 11 chr5 85459636 85460172 -67077087 + MT2B LTR ERVL 1 601 0 6 1237 375 60 0 0 chr5 85460172 85460222 -67077037 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1237 1013 198 97 15 chr5 85460222 85460348 -67076911 - Lx9 LINE L1 -168 7476 7351 6 1237 2670 206 19 83 chr5 85460417 85461149 -67076110 - RMER6C LTR ERVK 0 690 6 6 1237 528 177 46 8 chr5 85461154 85461285 -67075974 - RMER6-int LTR ERVK 0 3177 3042 6 1237 865 214 48 26 chr5 85461318 85461548 -67075711 - Lx4B LINE L1 -946 6112 5878 6 1237 3827 153 62 13 chr5 85461547 85462323 -67074936 + L1_Mur2 LINE L1 3828 4641 -1236 6 1237 2930 77 9 5 chr5 85462677 85463096 -67074163 + BGLII LTR ERVK 1 421 0 6 1237 2641 298 45 7 chr5 85463928 85464843 -67072416 + Lx9 LINE L1 6073 7150 -494 6 1237 305 148 0 0 chr5 85464903 85464957 -67072302 + Lx9 LINE L1 7372 7425 -219 6 1237 461 235 7 49 chr5 85465062 85465205 -67072054 + Lx7 LINE L1 7543 7679 -17 6 1237 23 54 0 0 chr5 85465205 85465242 -67072017 + AT_rich Low_complexity Low_complexity 1 37 0 6 1237 1003 153 160 38 chr5 85466025 85466263 -67070996 + Lx3C LINE L1 6707 6973 -3 6 1237 1195 94 33 0 chr5 85466420 85466600 -67070659 - B2_Mm2 SINE B2 -9 186 1 6 1237 1040 109 0 18 chr5 85466608 85466776 -67070483 + L1Md_F2 LINE L1 6414 6578 -4 6 1237 357 34 33 17 chr5 85466790 85466850 -67070409 + (CAAAAA)n Simple_repeat Simple_repeat 6 66 0 6 1237 625 273 101 5 chr5 85467651 85467839 -67069420 + B3 SINE B2 2 207 -9 6 1237 25 31 0 0 chr5 85468124 85468156 -67069103 + AT_rich Low_complexity Low_complexity 1 32 0 6 1237 368 269 67 44 chr5 85469305 85469486 -67067773 - L1MA4 LINE L1 -461 5839 5620 6 1237 538 300 60 24 chr5 85469486 85469817 -67067442 + RLTR15 LTR ERVK 1 343 -16 6 1237 529 256 21 39 chr5 85469827 85470018 -67067241 - L1_Rod LINE L1 -533 5656 5428 6 1237 567 94 0 0 chr5 85470018 85470114 -67067145 + (TC)n Simple_repeat Simple_repeat 2 97 0 6 1237 360 0 0 0 chr5 85470115 85470155 -67067104 + (TA)n Simple_repeat Simple_repeat 1 40 0 6 1237 6108 49 5 0 chr5 85470239 85470995 -67066264 - L1Md_F2 LINE L1 -1 6581 5822 6 1237 576 40 13 0 chr5 85470995 85471070 -67066189 + L1Md_F2 LINE L1 5737 5812 -770 6 1237 424 244 19 61 chr5 85471058 85471110 -67066149 - Lx9 LINE L1 -94 7550 7502 6 1237 216 111 0 0 chr5 85471110 85471146 -67066113 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1237 424 244 19 61 chr5 85471146 85471307 -67065952 - Lx9 LINE L1 -143 7501 7346 6 1237 22 70 0 0 chr5 85471377 85471420 -67065839 + AT_rich Low_complexity Low_complexity 1 43 0 7 1237 268 309 102 53 chr5 85471678 85471924 -67065335 + L1ME1 LINE L1 5789 6046 -133 7 1237 3783 90 6 6 chr5 85474238 85474773 -67062486 - L1_Mus3 LINE L1 0 6638 6104 7 1237 423 56 0 0 chr5 85474952 85475006 -67062253 + (TTCA)n Simple_repeat Simple_repeat 3 56 0 7 1237 249 275 0 92 chr5 85475006 85475073 -67062186 - ID2 SINE ID -6 77 15 7 1237 4487 237 48 17 chr5 85475107 85476099 -67061160 - Lx5 LINE L1 -1 7049 6049 7 1237 354 61 0 0 chr5 85476099 85476148 -67061111 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 7 1237 4487 237 48 17 chr5 85476148 85476226 -67061033 - Lx5 LINE L1 -1002 6048 5948 7 1237 202 279 0 60 chr5 85476790 85476874 -67060385 + GA-rich Low_complexity Low_complexity 5 83 0 7 1237 345 303 82 53 chr5 85477561 85477843 -67059416 + HAL1 LINE L1 1175 1464 -1043 7 1237 522 311 98 37 chr5 85478250 85478547 -67058712 - ORR1E LTR MaLR -9 350 36 7 1237 3122 202 18 18 chr5 85479323 85479984 -67057275 + L1VL4 LINE L1 218 878 -5424 7 1237 1760 170 9 46 chr5 85479984 85480355 -67056904 - Lx3A LINE L1 -802 6179 5820 7 1237 307 266 51 0 chr5 85480732 85480811 -67056448 - Lx7 LINE L1 -787 6909 6827 7 1237 293 268 96 48 chr5 85481495 85481683 -67055576 - Kanga1 DNA Tc2 -1163 582 386 7 1237 267 352 44 49 chr5 85481763 85481966 -67055293 - Kanga1 DNA Tc2 -1326 419 218 7 1237 401 318 70 70 chr5 85482915 85482972 -67054287 - Lx8 LINE L1 -132 7341 7289 7 1237 2729 186 92 23 chr5 85482972 85483540 -67053719 + RMER19C LTR ERVK 5 611 0 7 1237 401 318 70 70 chr5 85483540 85483709 -67053550 - Lx8 LINE L1 -185 7288 7115 7 1237 258 94 38 0 chr5 85484376 85484429 -67052830 - Lx3_Mus LINE L1 -8 7001 6947 7 1237 3022 152 11 21 chr5 85485060 85485592 -67051667 - Lx2 LINE L1 -3 6994 6468 7 1237 309 319 45 81 chr5 85485995 85486353 -67050906 + L1MB3 LINE L1 5824 6168 -15 7 1237 691 167 0 0 chr5 85486395 85486515 -67050744 + Lx9 LINE L1 7277 7396 -248 7 1237 289 155 14 14 chr5 85486529 85486601 -67050658 + Lx9 LINE L1 7547 7618 -26 7 1237 23 68 0 0 chr5 85486692 85486736 -67050523 + AT_rich Low_complexity Low_complexity 1 44 0 7 1237 220 234 0 0 chr5 85487065 85487112 -67050147 + A-rich Low_complexity Low_complexity 1 47 0 7 1237 295 244 154 0 chr5 85487138 85487216 -67050043 + MTD LTR MaLR 228 317 -102 7 1237 26 0 0 0 chr5 85487230 85487256 -67050003 + AT_rich Low_complexity Low_complexity 1 26 0 7 1237 383 280 54 31 chr5 85487888 85488017 -67049242 + RSINE1 SINE B4 3 134 -31 7 1237 210 71 0 0 chr5 85488026 85488054 -67049205 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1237 438 20 0 0 chr5 85488060 85488111 -67049148 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1237 32 57 0 0 chr5 85488135 85488188 -67049071 + AT_rich Low_complexity Low_complexity 1 53 0 7 1237 306 359 5 47 chr5 85489385 85489578 -67047681 + MLT2B1 LTR ERVL 2 186 -334 7 1237 277 170 57 0 chr5 85489762 85489815 -67047444 - Lx3C LINE L1 0 6976 6921 7 1237 1194 162 5 5 chr5 85489816 85490014 -67047245 + RLTR13D6 LTR ERVK 1 198 -704 7 1237 34728 71 1 3 chr5 85490048 85496265 -67040994 - L1Md_F2 LINE L1 0 6585 285 7 1237 3267 146 97 28 chr5 85496268 85496938 -67040321 + RLTR13D6 LTR ERVK 187 902 0 7 1237 3597 154 51 2 chr5 85496938 85497541 -67039718 - Lx3C LINE L1 -51 6925 6293 7 1237 317 167 139 0 chr5 85497531 85497603 -67039656 - Lx3C LINE L1 -797 6179 6098 7 1237 7827 151 21 38 chr5 85497605 85498954 -67038305 + Lx3C LINE L1 4428 5794 -92 7 1237 1099 83 7 0 chr5 85498954 85499099 -67038160 + B1_Mus2 SINE Alu 1 146 -1 7 1237 7827 141 23 91 chr5 85499099 85499430 -67037829 + Lx3C LINE L1 5792 6081 -895 7 1237 376 350 50 6 chr5 85502222 85502403 -67034856 + B3A SINE B2 3 191 -7 1 1237 247 239 159 0 chr5 85502616 85502704 -67034555 + MLT1B LTR MaLR 1 102 -288 2 1237 3050 19 0 44 chr5 85502899 85503283 -67033976 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1237 1014 86 159 0 chr5 85503283 85503446 -67033813 + IAPEz-int LTR ERVK 8 196 -6285 3 1237 54813 23 15 4 chr5 85503417 85509815 -67027444 + IAPEz-int LTR ERVK 67 6481 0 3 1237 3050 19 0 44 chr5 85509815 85510199 -67027060 + IAPLTR1_Mm LTR ERVK 1 367 0 3 1237 25 51 0 0 chr5 85510784 85510823 -67026436 + AT_rich Low_complexity Low_complexity 1 39 0 4 1237 3396 134 10 46 chr5 85510914 85511506 -67025753 - Lx2 LINE L1 0 6997 6427 5 1237 245 271 0 0 chr5 85511790 85511849 -67025410 - RLTR20A2 LTR ERVK -12 566 508 6 1237 1966 188 30 59 chr5 85511859 85512351 -67024908 + RMER6C LTR ERVK 213 690 0 7 1237 26 0 0 0 chr5 85512695 85512721 -67024538 + AT_rich Low_complexity Low_complexity 1 26 0 8 1237 4919 266 72 40 chr5 85512809 85514658 -67022601 - Lx7 LINE L1 -284 7412 5517 9 1237 24 0 0 0 chr5 85514886 85514910 -67022349 + AT_rich Low_complexity Low_complexity 1 24 0 1 1237 200 0 0 91 chr5 85514961 85515005 -67022254 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1 1237 561 68 0 0 chr5 85515014 85515088 -67022171 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1 1237 1065 109 0 0 chr5 85515097 85515244 -67022015 + B1_Mus1 SINE Alu 1 147 -1 1 1237 185 108 27 0 chr5 85515331 85515368 -67021891 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 1 1237 303 350 0 0 chr5 85515371 85515471 -67021788 - ID_B1 SINE B4 -3 221 122 1 1237 476 0 34 0 chr5 85516531 85516590 -67020669 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 1 1237 23 0 0 0 chr5 85517062 85517085 -67020174 + AT_rich Low_complexity Low_complexity 1 23 0 1 1237 2805 48 0 0 chr5 85517118 85517449 -67019810 + IAPEY3_LTR LTR ERVK 1 331 -1 1 1237 432 0 0 0 chr5 85517449 85517497 -67019762 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1237 2623 88 0 39 chr5 85517856 85518268 -67018991 + L1Md_F2 LINE L1 6187 6582 0 2 1237 3137 77 7 5 chr5 85518283 85518716 -67018543 + L1_Mus3 LINE L1 6205 6638 0 2 1237 277 376 57 44 chr5 85518807 85519055 -67018204 + L2 LINE L2 2065 2315 -1104 2 1237 198 273 101 25 chr5 85519682 85519761 -67017498 + L4 LINE RTE 1309 1393 -636 2 1237 1364 221 89 33 chr5 85520083 85520420 -67016839 - ORR1C1 LTR MaLR -17 361 6 2 1237 207 0 0 0 chr5 85521159 85521182 -67016077 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2 1237 184 146 18 35 chr5 85521655 85521712 -67015547 + (TCTCTG)n Simple_repeat Simple_repeat 4 59 0 2 1237 339 25 0 0 chr5 85521729 85521769 -67015490 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1237 495 0 0 0 chr5 85521769 85521823 -67015436 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 1237 1826 140 52 10 chr5 85522144 85522454 -67014805 + Lx2 LINE L1 6675 6997 0 2 1237 444 51 0 0 chr5 85522709 85522768 -67014491 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1237 1790 59 0 0 chr5 85523309 85523531 -67013728 - L1Md_F2 LINE L1 -225 6357 6136 3 1237 734 47 0 0 chr5 85523531 85523637 -67013622 + L1Md_T LINE L1 6476 6581 -1 3 1237 438 351 36 0 chr5 85523815 85523983 -67013276 + MTEb LTR MaLR 192 365 -14 3 1237 1153 62 0 7 chr5 85524058 85524204 -67013055 + B1_Mm SINE Alu 2 146 -1 3 1237 306 0 0 0 chr5 85525890 85525924 -67011335 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1237 482 261 22 0 chr5 85525938 85526076 -67011183 - Lx6 LINE L1 0 7460 7320 3 1237 1961 231 49 76 chr5 85526062 85526683 -67010576 + Lx4B LINE L1 6466 7036 -22 3 1237 494 259 71 12 chr5 85526682 85526850 -67010409 - Lx6 LINE L1 -146 7314 7137 3 1237 1173 129 16 5 chr5 85526850 85527037 -67010222 + B2_Mm2 SINE B2 1 189 -6 3 1237 555 16 0 0 chr5 85527043 85527107 -67010152 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1237 5217 244 58 29 chr5 85527199 85527315 -67009944 - Lx6 LINE L1 -430 7030 6898 3 1237 486 0 0 0 chr5 85527315 85527369 -67009890 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1237 537 16 0 0 chr5 85527369 85527430 -67009829 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1237 5217 244 58 29 chr5 85527430 85528234 -67009025 - Lx6 LINE L1 -563 6897 6067 3 1237 198 0 0 0 chr5 85528234 85528256 -67009003 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1237 5217 212 37 19 chr5 85528256 85528885 -67008374 - Lx6 LINE L1 -1394 6066 5436 3 1237 735 189 21 7 chr5 85528942 85529086 -67008173 + B1_Mus1 SINE Alu 2 147 -1 4 1237 304 83 50 0 chr5 85529116 85529176 -67008083 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 4 1237 198 250 14 81 chr5 85530242 85530316 -67006943 - MIRm SINE MIR -1 275 207 4 1237 647 255 51 65 chr5 85530866 85531335 -67005924 - L1_Rod LINE L1 -4469 1378 898 4 1237 6233 39 1 0 chr5 85531647 85532394 -67004865 - L1Md_T LINE L1 -1 6581 5834 4 1237 9689 17 0 0 chr5 85532394 85533518 -67003741 + L1_Mm LINE L1 4135 5258 -625 4 1237 253 264 70 57 chr5 85534350 85534507 -67002752 - RMER10A LTR ERVL -162 280 122 4 1237 22 0 0 0 chr5 85534586 85534608 -67002651 + AT_rich Low_complexity Low_complexity 1 22 0 5 1237 23 54 0 0 chr5 85536366 85536403 -67000856 + AT_rich Low_complexity Low_complexity 1 37 0 5 1237 23 0 0 0 chr5 85537067 85537090 -67000169 + AT_rich Low_complexity Low_complexity 1 23 0 5 1237 7457 73 1 8 chr5 85537210 85538203 -66999056 - L1Md_F2 LINE L1 0 6582 5597 5 1237 6969 84 1 1 chr5 85538198 85539139 -66998120 + L1Md_F2 LINE L1 4646 5586 -297 5 1237 8110 42 8 0 chr5 85539140 85540126 -66997133 + L1Md_F2 LINE L1 5588 6581 -1 5 1237 2493 36 0 7 chr5 85540130 85540433 -66996826 + L1Md_F2 LINE L1 5286 5586 -297 5 1237 8110 42 8 0 chr5 85540434 85541420 -66995839 + L1Md_F2 LINE L1 5588 6581 -1 5 1237 2321 42 0 7 chr5 85541424 85541711 -66995548 + L1_Mm LINE L1 5286 5570 -313 5 1237 1067 141 21 0 chr5 85542307 85542498 -66994761 + L1_Mus3 LINE L1 6439 6633 -5 5 1237 289 270 118 50 chr5 85543010 85543189 -66994070 + Lx9 LINE L1 5779 5971 -1673 5 1237 312 191 0 0 chr5 85543247 85543336 -66993923 + CT-rich Low_complexity Low_complexity 2 90 0 5 1237 1103 304 94 35 chr5 85543417 85543905 -66993354 + Lx9 LINE L1 6376 6892 -752 5 1237 2781 74 5 34 chr5 85543927 85544144 -66993115 - MTA_Mm LTR MaLR 0 396 188 5 1237 2885 99 0 28 chr5 85544144 85544579 -66992680 - L1Md_F2 LINE L1 -1 6581 6159 6 1237 2781 74 5 34 chr5 85544579 85544769 -66992490 - MTA_Mm LTR MaLR -209 187 1 5 1237 497 68 14 0 chr5 85544965 85545039 -66992220 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 1237 514 240 78 45 chr5 85545059 85545229 -66992030 - MTB_Mm LTR MaLR -53 354 178 6 1237 2524 125 40 7 chr5 85545229 85545656 -66991603 - L1_Mus3 LINE L1 0 6638 6198 6 1237 514 271 84 443 chr5 85545656 85545695 -66991564 - MTB_Mm LTR MaLR -229 192 155 6 1237 1101 78 0 7 chr5 85545695 85545849 -66991410 + L1_Mus2 LINE L1 5889 6041 -525 6 1237 298 408 61 22 chr5 85545920 85546198 -66991061 + Lx8 LINE L1 7035 7323 -150 6 1237 369 0 0 0 chr5 85546198 85546239 -66991020 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1237 327 297 52 59 chr5 85546250 85546386 -66990873 - B3A SINE B2 -56 142 8 6 1237 369 78 0 0 chr5 85546388 85546486 -66990773 + L1Md_F2 LINE L1 6510 6582 0 6 1237 6324 71 75 0 chr5 85546757 85548309 -66988950 - L1VL1 LINE L1 -3912 1971 282 6 1237 604 257 55 9 chr5 85548309 85548524 -66988735 - MTC LTR MaLR -138 283 1 7 1237 2912 277 90 31 chr5 85548524 85549577 -66987682 - MTC-int LTR MaLR -7 1251 18 7 1237 252 210 65 0 chr5 85549606 85549668 -66987591 - ORR1E LTR MaLR -11 348 283 7 1237 227 239 75 0 chr5 85549920 85549987 -66987272 + L1M2 LINE L1 5529 5600 -712 7 1237 374 57 19 0 chr5 85550162 85550215 -66987044 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1237 824 224 131 66 chr5 85550243 85550395 -66986864 - Lx7 LINE L1 0 7696 7526 7 1237 180 111 0 0 chr5 85550395 85550422 -66986837 + (AAATG)n Simple_repeat Simple_repeat 3 29 0 7 1237 824 224 131 66 chr5 85550422 85550589 -66986670 - Lx7 LINE L1 -171 7525 7356 7 1237 30 0 0 0 chr5 85550596 85550626 -66986633 + AT_rich Low_complexity Low_complexity 1 30 0 7 1237 229 319 0 0 chr5 85550651 85550723 -66986536 - Lx7 LINE L1 -342 7354 7283 7 1237 28 29 0 0 chr5 85551270 85551305 -66985954 + AT_rich Low_complexity Low_complexity 1 35 0 7 1237 198 0 0 0 chr5 85551613 85551635 -66985624 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 7 1237 272 368 34 0 chr5 85551635 85551752 -66985507 + MER70B LTR ERVL 61 181 -397 7 1237 22 0 0 0 chr5 85552099 85552121 -66985138 + AT_rich Low_complexity Low_complexity 1 22 0 8 1237 28 102 0 0 chr5 85552147 85552245 -66985014 + AT_rich Low_complexity Low_complexity 1 98 0 8 1237 366 172 0 0 chr5 85552256 85552314 -66984945 + B1_Mur4 SINE Alu 2 59 -91 8 1237 22 56 0 0 chr5 85552613 85552649 -66984610 + AT_rich Low_complexity Low_complexity 1 36 0 8 1237 1519 215 76 19 chr5 85553311 85554118 -66983141 + L1_Mus1 LINE L1 6243 6486 -81 8 1237 267 354 39 8 chr5 85554118 85554246 -66983013 + Lx9 LINE L1 7201 7332 -312 8 1237 215 160 0 39 chr5 85554368 85554420 -66982839 + CT-rich Low_complexity Low_complexity 1 50 0 8 1237 360 0 0 0 chr5 85554428 85554468 -66982791 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1237 323 373 18 0 chr5 85554624 85554734 -66982525 + ID_B1 SINE B4 103 214 -10 8 1237 225 0 0 0 chr5 85555152 85555177 -66982082 + (TA)n Simple_repeat Simple_repeat 1 25 0 8 1237 558 0 0 0 chr5 85555632 85555694 -66981565 + (GA)n Simple_repeat Simple_repeat 1 62 0 9 1237 33 0 0 0 chr5 85555701 85555734 -66981525 + AT_rich Low_complexity Low_complexity 1 33 0 9 1237 1407 213 23 7 chr5 85556686 85556993 -66980266 - RMER1A Other Other -100 930 619 9 1237 1281 337 86 37 chr5 85557086 85557681 -66979578 + RMER15-int LTR ERVL 4147 4770 -229 9 1237 3770 209 79 10 chr5 85557880 85558677 -66978582 + Lx5 LINE L1 6196 7047 -3 9 1237 412 388 74 14 chr5 85558879 85559164 -66978095 + RMER15 LTR ERVL 274 575 0 9 1237 194 270 52 39 chr5 85560329 85560406 -66976853 - MIR SINE MIR -71 191 114 9 1237 938 69 0 8 chr5 85560554 85560686 -66976573 + (GAA)n Simple_repeat Simple_repeat 2 132 0 9 1237 532 251 148 32 chr5 85560693 85560882 -66976377 + Lx8 LINE L1 7038 7248 -225 9 1237 368 338 25 13 chr5 85561124 85561283 -66975976 - RMER30 DNA MER1_type -40 162 2 9 1237 188 67 33 0 chr5 85561629 85561659 -66975600 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 9 1237 317 280 46 36 chr5 85561919 85562056 -66975203 + PB1D9 SINE Alu 8 149 0 1 1237 1169 91 20 79 chr5 85563111 85563313 -66973946 + Lx LINE L1 6315 6504 -150 1 1237 2671 133 43 2 chr5 85563323 85563766 -66973493 + Lx3_Mus LINE L1 6539 6999 -10 1 1237 999 118 0 0 chr5 85564115 85564268 -66972991 + (TTCC)n Simple_repeat Simple_repeat 2 154 0 1 1237 26 0 0 0 chr5 85564596 85564622 -66972637 + AT_rich Low_complexity Low_complexity 1 26 0 1 1237 195 129 0 0 chr5 85565695 85565726 -66971533 + (ATG)n Simple_repeat Simple_repeat 2 32 0 1 1237 225 0 0 0 chr5 85566000 85566025 -66971234 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1237 689 317 10 0 chr5 85566133 85566338 -66970921 - Lx6 LINE L1 -27 7433 7227 1 1237 1053 180 13 36 chr5 85566329 85566740 -66970519 + L1_Mur3 LINE L1 1063 1448 -4429 1 1237 26 0 0 0 chr5 85566740 85566766 -66970493 + AT_rich Low_complexity Low_complexity 1 26 0 1 1237 366 42 19 86 chr5 85567010 85567090 -66970169 + (CAAAAA)n Simple_repeat Simple_repeat 4 79 0 1 1237 1111 69 14 0 chr5 85567090 85567235 -66970024 + B1_Mm SINE Alu 1 147 0 1 1237 366 42 19 86 chr5 85567235 85567259 -66970000 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1237 24 67 0 0 chr5 85567846 85567891 -66969368 + AT_rich Low_complexity Low_complexity 1 45 0 1 1237 476 314 166 28 chr5 85568518 85569013 -66968246 - L1M5 LINE L1 -1398 4748 4186 1 1237 2790 265 82 50 chr5 85569642 85570722 -66966537 + RMER1C Other Other 164 1339 -3 1 1237 9871 35 0 0 chr5 85570728 85571937 -66965322 - L1_Mm LINE L1 -1941 3942 2734 1 1237 6527 47 0 1 chr5 85571944 85572727 -66964532 + L1_Mm LINE L1 4805 5586 -297 1 1237 8470 31 1 0 chr5 85572727 85573721 -66963538 + L1Md_T LINE L1 5587 6581 -1 1 1237 6527 47 0 1 chr5 85573721 85573740 -66963519 + L1_Mm LINE L1 5587 5605 -278 1 1237 1572 226 65 168 chr5 85574024 85574524 -66962735 + RMER1B Other Other 424 923 -143 1 1237 255 79 0 0 chr5 85574524 85574562 -66962697 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1237 1572 226 65 168 chr5 85574562 85574769 -66962490 + RMER1B Other Other 924 1058 -8 1 1237 8097 140 84 67 chr5 85575697 85576348 -66960911 - L1_Mm LINE L1 -78 5805 5252 1 1237 1544 87 18 0 chr5 85576348 85576577 -66960682 - L1_Mus3 LINE L1 -8 6630 6398 1 1237 8097 140 84 67 chr5 85576577 85577599 -66959660 - L1_Mm LINE L1 -632 5251 4104 1 1237 5253 99 37 26 chr5 85577599 85578321 -66958938 + L1_Mus3 LINE L1 5821 6540 -98 1 1237 180 0 0 0 chr5 85578321 85578341 -66958918 + (GGGGA)n Simple_repeat Simple_repeat 1 20 0 1 1237 5253 99 37 26 chr5 85578341 85578427 -66958832 + L1_Mus3 LINE L1 6541 6636 -2 1 1237 1133 126 5 0 chr5 85578628 85578852 -66958407 + (TA)n Simple_repeat Simple_repeat 1 225 0 1 1237 23 0 0 0 chr5 85579254 85579277 -66957982 + AT_rich Low_complexity Low_complexity 1 23 0 1 1237 1321 167 56 0 chr5 85579307 85579558 -66957701 - Lx3A LINE L1 0 6981 6717 1 1237 632 285 313 21 chr5 85579573 85579993 -66957266 - Lx8 LINE L1 -39 7434 6892 1 1237 24 0 0 0 chr5 85580325 85580349 -66956910 + AT_rich Low_complexity Low_complexity 1 24 0 1 1237 2957 59 0 5 chr5 85581069 85581442 -66955817 - L1Md_F2 LINE L1 -187 5696 5326 1 1237 6649 75 7 6 chr5 85581442 85582321 -66954938 + L1Md_F2 LINE L1 5700 6579 -3 1 1237 21 36 0 0 chr5 85582441 85582469 -66954790 + AT_rich Low_complexity Low_complexity 1 28 0 1 1237 7240 86 6 0 chr5 85582603 85583679 -66953580 - L1_Mus2 LINE L1 0 6566 5486 1 1237 837 180 85 0 chr5 85583684 85583873 -66953386 - RMER6B LTR ERVK -256 205 1 1 1237 194 179 0 18 chr5 85583877 85583934 -66953325 + (TTATA)n Simple_repeat Simple_repeat 4 59 0 1 1237 481 205 51 38 chr5 85583934 85584091 -66953168 + Lx9 LINE L1 7477 7635 -9 1 1237 664 324 49 69 chr5 85584106 85584454 -66952805 + ORR1E LTR MaLR 19 359 0 1 1237 746 329 82 65 chr5 85584931 85585380 -66951879 + MT2A LTR ERVL 75 531 -2 1 1237 3885 132 0 0 chr5 85586009 85586601 -66950658 - L1_Mm LINE L1 -619 5264 4673 1 1237 1897 88 261 3 chr5 85586953 85587271 -66949988 + MTB LTR MaLR 1 400 0 1 1237 297 75 0 0 chr5 85588662 85588702 -66948557 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1237 896 210 156 0 chr5 85588787 85589011 -66948248 - MT2B LTR ERVL -342 259 1 1 1237 2892 209 37 13 chr5 85589051 85589676 -66947583 - ORR1B1-int LTR MaLR -1323 640 1 1 1237 1863 199 11 20 chr5 85589678 85589921 -66947338 - ORR1B1 LTR MaLR -2 392 154 1 1237 216 0 0 0 chr5 85589921 85589945 -66947314 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 154 1863 198 29 24 chr5 85589945 85590065 -66947194 - ORR1B1 LTR MaLR -241 153 1 1 1238 22 80 0 0 chr5 85590511 85590561 -66946698 + AT_rich Low_complexity Low_complexity 1 50 0 1 1238 275 67 0 43 chr5 85591731 85591778 -66945481 + (TCTCCC)n Simple_repeat Simple_repeat 5 49 0 1 1238 842 90 15 0 chr5 85591833 85591966 -66945293 + (TCTCTG)n Simple_repeat Simple_repeat 2 136 0 1 1238 291 54 0 0 chr5 85591966 85592003 -66945256 + (TCTCCC)n Simple_repeat Simple_repeat 3 39 0 1 1238 980 100 6 0 chr5 85592060 85592220 -66945039 + (TC)n Simple_repeat Simple_repeat 2 162 0 1 1238 197 137 0 38 chr5 85592231 85592284 -66944975 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1 1238 378 74 0 0 chr5 85592284 85592338 -66944921 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1238 4148 49 0 2 chr5 85592777 85593288 -66943971 + L1Md_F3 LINE L1 6061 6570 -14 1 1238 927 232 34 54 chr5 85593309 85593660 -66943599 + L1_Mur3 LINE L1 3190 3533 -2347 1 1238 214 365 89 7 chr5 85593746 85593892 -66943367 + L2a LINE L2 3269 3426 0 1 1238 251 222 175 0 chr5 85595346 85595409 -66941850 + B4A SINE B4 50 123 -169 1 1238 37923 30 0 0 chr5 85596337 85602798 -66934461 - L1Md_T LINE L1 0 6585 28 1 1238 1288 38 11 21 chr5 85602798 85602985 -66934274 - RLTR44C LTR ERVK -85 417 233 1 1238 433 317 72 44 chr5 85603055 85603306 -66933953 + RLTR11A2 LTR ERVK 1 258 -269 1 1238 261 385 57 71 chr5 85603491 85603701 -66933558 + MTEa LTR MaLR 55 261 -118 1 1238 256 295 91 77 chr5 85603773 85603916 -66933343 - MLT1A1 LTR MaLR -239 169 25 1 1238 416 343 94 74 chr5 85604157 85604456 -66932803 - MLT1E2 LTR MaLR -11 616 312 1 1238 267 293 143 0 chr5 85610411 85610493 -66926766 - L1_Mur3 LINE L1 -2905 2975 2894 1 1238 378 0 0 0 chr5 85610493 85610535 -66926724 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1 1238 267 293 143 0 chr5 85610535 85610592 -66926667 - L1_Mur3 LINE L1 -2987 2893 2818 1 1238 207 0 0 0 chr5 85610606 85610629 -66926630 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1238 1083 79 0 0 chr5 85610629 85610768 -66926491 - B1_Mm SINE Alu -8 139 1 1 1238 257 345 55 0 chr5 85610966 85611076 -66926183 + L2 LINE L2 2669 2784 -635 1 1238 438 20 0 0 chr5 85611219 85611270 -66925989 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1 1238 1718 230 96 18 chr5 85611744 85612191 -66925068 - Lx6 LINE L1 -1 7459 6978 1 1238 492 200 42 0 chr5 85612191 85612286 -66924973 + Lx6 LINE L1 6794 6892 -568 1 1238 189 0 0 0 chr5 85612472 85612493 -66924766 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 1 1238 25 95 0 0 chr5 85612883 85612957 -66924302 + AT_rich Low_complexity Low_complexity 1 74 0 1 1238 1032 72 0 19 chr5 85613337 85613492 -66923767 - L1Md_F3 LINE L1 0 6584 6433 1 1238 846 180 0 0 chr5 85613955 85614133 -66923126 + (TA)n Simple_repeat Simple_repeat 2 179 0 1 1238 2832 45 0 8 chr5 85614198 85614555 -66922704 + L1Md_F3 LINE L1 6229 6582 -2 1 1238 237 98 0 0 chr5 85615812 85615853 -66921406 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1238 180 97 0 0 chr5 85615853 85615884 -66921375 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1238 522 31 0 0 chr5 85615884 85615947 -66921312 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1238 278 0 0 51 chr5 85616380 85616419 -66920840 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1238 1155 44 0 0 chr5 85616419 85616555 -66920704 - B1_Mm SINE Alu -10 137 2 1 1238 2550 221 31 6 chr5 85617606 85618116 -66919143 - RMER1B Other Other -131 935 413 1 1238 23 68 0 0 chr5 85620304 85620348 -66916911 + AT_rich Low_complexity Low_complexity 1 44 0 1 1238 351 218 81 0 chr5 85620637 85620724 -66916535 - MER2 DNA MER2_type -168 177 84 1 1238 4672 85 0 5 chr5 85623471 85624108 -66913151 - L1Md_F2 LINE L1 0 6582 5949 1 1238 1543 95 0 0 chr5 85624108 85624318 -66912941 + L1_Mm LINE L1 4925 5134 -749 1 1238 2486 107 18 10 chr5 85624629 85625016 -66912243 + L1_Mus3 LINE L1 6249 6638 0 1 1238 573 134 0 0 chr5 85625221 85625333 -66911926 + (TC)n Simple_repeat Simple_repeat 1 112 0 1 1238 194 0 39 0 chr5 85626363 85626389 -66910870 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1238 422 171 23 0 chr5 85626645 85626733 -66910526 + (CAGAGA)n Simple_repeat Simple_repeat 5 94 0 1 1238 279 0 0 0 chr5 85626743 85626774 -66910485 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1238 21 36 0 0 chr5 85626937 85626965 -66910294 + AT_rich Low_complexity Low_complexity 1 28 0 1 1238 2839 93 5 2 chr5 85627148 85627545 -66909714 + MTB LTR MaLR 1 398 -2 1 1238 6605 105 58 6 chr5 85627547 85628591 -66908668 + MTB-int LTR MaLR 1 1098 0 1 1238 2430 112 58 8 chr5 85628591 85628968 -66908291 + MTB LTR MaLR 1 396 0 1 1238 247 223 170 0 chr5 85629014 85629126 -66908133 + Lx9 LINE L1 7508 7638 -6 1 1238 3531 259 77 67 chr5 85629616 85630813 -66906446 + Lx7 LINE L1 6017 7225 -471 1 1238 1543 207 25 6 chr5 85630826 85631152 -66906107 - Lx4B LINE L1 -98 6960 6629 1 1238 411 251 76 44 chr5 85631151 85631401 -66905858 + Lx7 LINE L1 7260 7517 -179 1 1238 318 226 8 102 chr5 85631509 85631627 -66905632 + RLTR25B LTR ERVK 415 521 -507 1 1238 734 111 0 9 chr5 85631540 85631649 -66905610 + B1_Mm SINE Alu 40 147 0 1 1238 216 111 0 0 chr5 85631651 85631687 -66905572 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 1 1238 382 193 12 0 chr5 85632090 85632173 -66905086 - Lx4A LINE L1 -40 7018 6935 1 1238 4452 144 4 10 chr5 85632175 85632871 -66904388 + Lx4A LINE L1 6198 6889 -169 1 1238 510 114 0 0 chr5 85633915 85633994 -66903265 + (CAGG)n Simple_repeat Simple_repeat 4 82 0 1 1238 261 182 0 0 chr5 85634020 85634075 -66903184 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1238 1052 110 0 0 chr5 85634119 85634264 -66902995 + B1_Mus1 SINE Alu 2 146 -2 1 1238 247 204 0 0 chr5 85634268 85634322 -66902937 + A-rich Low_complexity Low_complexity 1 54 0 2 1238 22 0 0 0 chr5 85634501 85634523 -66902736 + AT_rich Low_complexity Low_complexity 1 22 0 2 1238 4253 81 2 20 chr5 85634560 85635152 -66902107 + L1_Mus2 LINE L1 5985 6565 -1 2 1238 459 0 0 0 chr5 85635368 85635419 -66901840 + (TAG)n Simple_repeat Simple_repeat 2 52 0 2 1238 183 80 0 0 chr5 85635419 85635444 -66901815 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2 1238 226 358 81 12 chr5 85636151 85636312 -66900947 + MLT1A0 LTR MaLR 23 194 -171 2 1238 332 226 60 0 chr5 85636457 85636541 -66900718 + Lx9 LINE L1 7201 7289 -355 2 1238 1528 230 38 6 chr5 85636552 85636871 -66900388 - MTC LTR MaLR -2 419 91 2 1238 3080 204 35 11 chr5 85636884 85637520 -66899739 - Lx5 LINE L1 -1 7049 6399 2 1238 3533 206 21 19 chr5 85637520 85638289 -66898970 + Lx5 LINE L1 5665 6434 -616 2 1238 501 198 0 21 chr5 85638289 85638396 -66898863 - MTC LTR MaLR -297 110 6 2 1238 431 78 16 0 chr5 85639094 85639158 -66898101 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1238 27 29 0 0 chr5 85639393 85639427 -66897832 + AT_rich Low_complexity Low_complexity 1 34 0 2 1238 21 0 0 0 chr5 85639642 85639663 -66897596 + AT_rich Low_complexity Low_complexity 1 21 0 2 1238 197 250 0 67 chr5 85640121 85640181 -66897078 + L2c LINE L2 3321 3376 -11 2 1238 779 176 7 0 chr5 85640410 85640552 -66896707 + URR1B DNA MER1_type 83 225 0 2 1238 5475 215 58 33 chr5 85640613 85642202 -66895057 + Lx5 LINE L1 5399 7044 -6 2 1238 227 375 31 0 chr5 85644516 85644612 -66892647 + RSINE1 SINE B4 2 100 -65 2 1238 450 317 53 102 chr5 85644738 85644924 -66892335 - B3 SINE B2 -1 215 35 2 1238 281 26 26 0 chr5 85644924 85644962 -66892297 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1238 450 317 53 102 chr5 85644962 85645000 -66892259 - B3 SINE B2 -182 34 2 2 1238 321 26 0 0 chr5 85645044 85645082 -66892177 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1238 642 264 59 38 chr5 85645094 85645381 -66891878 + L1MA6 LINE L1 5404 5696 -595 2 1238 34 0 0 0 chr5 85645474 85645508 -66891751 + AT_rich Low_complexity Low_complexity 1 34 0 2 1238 7776 46 13 2 chr5 85645524 85646492 -66890767 - L1Md_F3 LINE L1 -14 6570 5592 2 1238 488 305 77 36 chr5 85646491 85646882 -66890377 + L1MA6 LINE L1 5858 6264 -27 2 1238 279 316 79 0 chr5 85647782 85647896 -66889363 - MER5B DNA MER1_type -18 160 38 2 1238 1110 258 35 32 chr5 85648440 85648756 -66888503 - Lx7 LINE L1 -1030 6666 6350 2 1238 224 328 57 74 chr5 85648780 85648902 -66888357 - PB1D7 SINE Alu 0 120 1 2 1238 517 280 23 0 chr5 85648902 85648960 -66888299 - B4A SINE B4 -207 85 25 2 1238 3430 57 2 20 chr5 85648977 85649426 -66887833 - L1_Mus1 LINE L1 0 6567 6127 2 1238 189 0 0 0 chr5 85649482 85649503 -66887756 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1238 905 228 56 63 chr5 85650024 85650309 -66886950 - RLTR40 LTR ERVK -514 303 21 2 1238 265 349 63 46 chr5 85650346 85650649 -66886610 - MER63D DNA AcHobo -646 415 108 2 1238 24 0 0 0 chr5 85652815 85652839 -66884420 + AT_rich Low_complexity Low_complexity 1 24 0 2 1238 21 0 0 0 chr5 85652995 85653016 -66884243 + AT_rich Low_complexity Low_complexity 1 21 0 2 1238 31 76 0 0 chr5 85653341 85653407 -66883852 + AT_rich Low_complexity Low_complexity 1 66 0 2 1238 418 375 14 14 chr5 85653548 85653694 -66883565 + RSINE1 SINE B4 8 153 -12 2 1238 435 19 0 0 chr5 85653699 85653751 -66883508 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1238 4510 168 78 21 chr5 85653787 85654703 -66882556 + Lx4A LINE L1 6088 7055 -3 2 1238 39 22 0 0 chr5 85654704 85654750 -66882509 + AT_rich Low_complexity Low_complexity 1 46 0 2 1238 33 25 0 0 chr5 85655204 85655244 -66882015 + AT_rich Low_complexity Low_complexity 1 40 0 2 1238 252 272 122 7 chr5 85655381 85655529 -66881730 - L1MC3 LINE L1 -100 7685 7521 2 1238 870 84 107 0 chr5 85655855 85655986 -66881273 + MTB LTR MaLR 256 400 0 2 1238 529 81 0 0 chr5 85655986 85656060 -66881199 + MTB-int LTR MaLR 1 74 -1024 2 1238 2393 126 32 78 chr5 85656030 85656503 -66880756 + MTB-int LTR MaLR 648 1098 0 2 1238 2965 88 2 0 chr5 85656503 85656902 -66880357 + MTB LTR MaLR 1 400 0 2 1238 5181 186 44 10 chr5 85657250 85658392 -66878867 + Lx5 LINE L1 5511 6711 -339 2 1238 517 369 38 52 chr5 85658692 85658981 -66878278 + B4A SINE B4 6 290 -2 2 1238 219 170 0 0 chr5 85659920 85659967 -66877292 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1238 492 18 0 0 chr5 85659992 85660049 -66877210 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1238 2245 141 5 5 chr5 85660053 85660431 -66876828 + L1_Mur2 LINE L1 3957 4334 -1543 2 1238 3531 148 39 27 chr5 85660431 85661068 -66876191 + Lx LINE L1 6003 6647 -7 2 1238 934 278 70 8 chr5 85661073 85661429 -66875830 + Lx9 LINE L1 7257 7634 -10 2 1238 389 351 44 68 chr5 85661468 85661764 -66875495 + ERVL-B4-int LTR ERVL 292 580 -5134 2 1238 362 268 129 14 chr5 85662532 85662672 -66874587 + MLT2B4 LTR ERVL 6 161 -395 2 1238 219 146 0 0 chr5 85662796 85662837 -66874422 + (T)n Simple_repeat Simple_repeat 1 41 0 2 1238 295 85 0 0 chr5 85662887 85662946 -66874313 - L1_Mus4 LINE L1 0 6636 6578 2 1238 366 107 0 0 chr5 85663031 85663087 -66874172 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1238 1768 269 42 8 chr5 85664766 85665261 -66871998 - Lx5 LINE L1 -46 7414 6498 2 1238 26 0 0 0 chr5 85665687 85665713 -66871546 + AT_rich Low_complexity Low_complexity 1 26 0 2 1238 23 33 0 0 chr5 85665927 85665957 -66871302 + AT_rich Low_complexity Low_complexity 1 30 0 2 1238 215 289 26 0 chr5 85666455 85666525 -66870734 + L2b LINE L2 3237 3331 -56 2 1238 1623 304 39 2 chr5 85666733 85667169 -66870090 - Lx6 LINE L1 -59 7401 6950 2 1238 4587 102 16 0 chr5 85667735 85668369 -66868890 + L1_Mus3 LINE L1 5974 6617 -21 2 1238 233 246 29 0 chr5 85669212 85669281 -66867978 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 2 1238 21 36 0 0 chr5 85670097 85670125 -66867134 + AT_rich Low_complexity Low_complexity 1 28 0 2 1238 214 217 33 16 chr5 85670730 85670791 -66866468 + GA-rich Low_complexity Low_complexity 2 63 0 2 1238 1041 68 15 0 chr5 85671141 85671273 -66865986 + B1_Mus1 SINE Alu 3 136 -12 2 1238 433 0 35 0 chr5 85671274 85671331 -66865928 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 2 1238 419 309 44 44 chr5 85671354 85671513 -66865746 - MIR SINE MIR -70 192 34 2 1238 251 234 39 0 chr5 85672578 85672655 -66864604 - Lx9 LINE L1 -48 7596 7517 2 1238 1094 89 11 11 chr5 85672870 85673051 -66864208 - L1Md_F2 LINE L1 -1 6581 6401 2 1238 21 57 0 0 chr5 85673489 85673524 -66863735 + AT_rich Low_complexity Low_complexity 1 35 0 2 1238 235 239 0 0 chr5 85673530 85673576 -66863683 + B1F1 SINE Alu 4 49 -100 2 1238 50 71 0 0 chr5 85673602 85673701 -66863558 + AT_rich Low_complexity Low_complexity 1 99 0 2 1238 296 347 102 20 chr5 85674728 85674875 -66862384 + RSINE1 SINE B4 3 161 -4 2 1238 453 326 92 103 chr5 85674943 85675292 -66861967 + ORR1E LTR MaLR 4 348 -11 2 1238 1266 116 24 76 chr5 85675474 85675725 -66861534 - L1_Mus3 LINE L1 0 6638 6401 2 1238 1790 97 0 0 chr5 85675725 85675963 -66861296 + L1_Mm LINE L1 5348 5585 -298 2 1238 569 271 37 37 chr5 85676387 85676575 -66860684 - Lx7 LINE L1 -372 7324 7137 2 1238 271 365 44 55 chr5 85677607 85677882 -66859377 + MamSINE1 SINE tRNA 17 288 -2 2 1238 676 37 0 0 chr5 85678322 85678403 -66858856 - L1_Mus4 LINE L1 -748 5888 5808 2 1238 5008 104 8 0 chr5 85678403 85679126 -66858133 + L1_Mus4 LINE L1 5901 6629 -7 2 1238 583 238 13 47 chr5 85680048 85680282 -66856977 - Lx9 LINE L1 -30 7614 7389 2 1238 441 309 76 17 chr5 85680452 85680645 -66856614 - B3A SINE B2 -2 191 2 2 1238 27708 62 1 1 chr5 85680649 85684251 -66853008 + L1Md_F2 LINE L1 1985 5586 -297 2 1238 7860 60 4 0 chr5 85684251 85685242 -66852017 + L1Md_F2 LINE L1 5587 6581 -1 2 1238 288 0 0 0 chr5 85685291 85685323 -66851936 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1238 29 47 0 0 chr5 85685397 85685440 -66851819 + AT_rich Low_complexity Low_complexity 1 43 0 2 1238 2116 66 0 0 chr5 85685511 85685782 -66851477 - L1_Mus1 LINE L1 -130 6437 6167 2 1238 718 81 0 46 chr5 85685782 85685912 -66851347 + L1Md_F2 LINE L1 6459 6582 0 2 1238 459 324 19 51 chr5 85686412 85686568 -66850691 - RSINE1 SINE B4 0 165 15 2 1238 615 221 53 0 chr5 85687056 85687169 -66850090 + B1_Mur1 SINE Alu 1 119 -30 2 1238 347 272 21 11 chr5 85687524 85687617 -66849642 - MER20 DNA MER1_type 0 219 126 2 1238 7191 75 0 0 chr5 85687903 85688847 -66848412 + L1_Mm LINE L1 4298 5241 -642 2 1238 829 178 78 0 chr5 85689374 85689554 -66847705 + B2_Mm2 SINE B2 2 195 0 2 1238 1056 332 91 30 chr5 85689620 85690349 -66846910 - Lx9 LINE L1 -168 7476 6704 2 1238 358 211 26 13 chr5 85690385 85690462 -66846797 + MTC LTR MaLR 129 206 -215 2 1238 270 56 0 0 chr5 85690522 85690558 -66846701 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 2 1238 6598 115 23 3 chr5 85690757 85691598 -66845661 + L1_Mus4 LINE L1 5229 6084 -552 2 1238 2953 96 7 2 chr5 85691598 85692017 -66845242 + BGLII LTR ERVK 1 421 0 2 1238 6598 116 21 14 chr5 85692017 85692521 -66844738 + L1_Mus4 LINE L1 6085 6583 -53 2 1238 35325 35 0 0 chr5 85692897 85698281 -66838978 + L1Md_T LINE L1 109 5589 -297 2 1238 8955 7 0 0 chr5 85698281 85699277 -66837982 + L1Md_T LINE L1 5590 6585 0 2 1238 214 338 42 0 chr5 85700379 85700450 -66836809 + ID_B1 SINE B4 78 151 -73 2 1238 450 0 0 0 chr5 85700553 85700603 -66836656 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1238 1121 69 0 14 chr5 85700603 85700615 -66836644 - B1_Mus1 SINE Alu -2 146 136 2 1238 243 0 0 0 chr5 85700615 85700642 -66836617 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 2 1238 1121 69 0 14 chr5 85700642 85700776 -66836483 - B1_Mus1 SINE Alu -13 135 2 2 1238 186 43 0 0 chr5 85701918 85701941 -66835318 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1238 270 281 11 43 chr5 85702010 85702103 -66835156 + B4 SINE B4 201 290 -2 2 1238 6032 227 34 10 chr5 85702644 85704196 -66833063 - Lx5 LINE L1 0 7050 5447 3 1238 183 42 0 0 chr5 85704196 85704220 -66833039 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 1238 2227 203 8 22 chr5 85704220 85704314 -66832945 - Lx5 LINE L1 -431 5446 5356 3 1238 4166 156 44 39 chr5 85704307 85705154 -66832105 + Lx5 LINE L1 4512 5362 -515 3 1238 1061 111 11 32 chr5 85705346 85705532 -66831727 - MTB_Mm LTR MaLR -229 192 1 3 1238 244 371 22 33 chr5 85706535 85706716 -66830543 + L2 LINE L2 2556 2734 -685 3 1238 425 242 15 0 chr5 85707325 85707457 -66829802 - Lx9 LINE L1 -8 7636 7503 3 1238 198 268 35 18 chr5 85707735 85707792 -66829467 - MIRc SINE MIR -165 103 46 3 1238 1139 254 56 17 chr5 85707974 85708330 -66828929 - ORR1D2 LTR MaLR 0 370 1 3 1238 22 35 0 0 chr5 85709860 85709889 -66827370 + AT_rich Low_complexity Low_complexity 1 29 0 3 1238 461 310 45 34 chr5 85710924 85711101 -66826158 + B3A SINE B2 20 198 0 3 1238 759 22 0 0 chr5 85711113 85711202 -66826057 + (GAGAA)n Simple_repeat Simple_repeat 4 92 0 3 1238 201 196 0 0 chr5 85711205 85711256 -66826003 + GA-rich Low_complexity Low_complexity 3 53 0 3 1238 3005 172 115 15 chr5 85711288 85711903 -66825356 - Lx4B LINE L1 -4 7054 6378 3 1238 300 246 0 0 chr5 85712023 85712092 -66825167 - Lx5 LINE L1 -414 6636 6568 3 1238 235 250 41 14 chr5 85712296 85712369 -66824890 + L1M3 LINE L1 5695 5769 -414 3 1238 399 41 0 0 chr5 85712902 85712951 -66824308 + (TC)n Simple_repeat Simple_repeat 2 50 0 3 1238 279 0 0 0 chr5 85712951 85712981 -66824278 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1238 1247 209 4 8 chr5 85713149 85713386 -66823873 - ORR1A4 LTR MaLR 0 329 94 3 1238 257 294 53 21 chr5 85713619 85713713 -66823546 - RLTR25B LTR ERVK -488 540 444 3 1238 1127 209 7 77 chr5 85713656 85713930 -66823329 - MT2B LTR ERVL -346 255 1 3 1238 296 250 27 63 chr5 85713839 85713950 -66823309 - ORR1A4-int LTR MaLR -1259 704 598 3 1238 221 228 0 34 chr5 85715433 85715492 -66821767 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 3 1238 291 355 58 5 chr5 85715553 85715743 -66821516 - L1MC1 LINE L1 -18 6315 6116 3 1238 639 195 118 0 chr5 85715767 85715962 -66821297 - Lx9 LINE L1 -2 7642 7425 3 1238 638 328 92 21 chr5 85715966 85716724 -66820535 - L1MC1 LINE L1 -202 6131 5265 3 1238 281 305 60 38 chr5 85716996 85717180 -66820079 - MER34 LTR ERV1 -39 503 316 3 1238 498 324 86 2 chr5 85717285 85717541 -66819718 - Lx6 LINE L1 -712 6338 6037 3 1238 284 264 19 9 chr5 85718190 85718297 -66818962 - L1MA8 LINE L1 -160 6131 6024 3 1238 349 192 0 0 chr5 85718573 85718646 -66818613 - Lx3B LINE L1 -1 6972 6900 3 1238 625 283 48 21 chr5 85718643 85718932 -66818327 - L1MA8 LINE L1 -524 5767 5471 3 1238 368 298 71 0 chr5 85718936 85719057 -66818202 + L1MA8 LINE L1 5254 5378 -919 3 1238 189 107 0 0 chr5 85719057 85719085 -66818174 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1238 368 298 71 0 chr5 85719085 85719161 -66818098 + L1M2 LINE L1 5379 5464 -833 3 1238 22 0 0 0 chr5 85720037 85720059 -66817200 + AT_rich Low_complexity Low_complexity 1 22 0 3 1238 463 255 0 0 chr5 85720593 85720687 -66816572 + Lx5 LINE L1 6354 6447 -603 3 1238 1149 117 56 0 chr5 85720708 85720888 -66816371 - B2_Mm2 SINE B2 -5 190 1 3 154 2921 60 3 5 chr5 85720976 85721394 -66815865 + L1Md_F2 LINE L1 6192 6582 0 3 1239 2921 60 3 5 chr5 85721394 85721407 -66815852 + L1Md_F2 LINE L1 6561 6573 -9 3 1239 256 399 109 19 chr5 85721483 85721795 -66815464 + LTR16B1 LTR ERVL 120 459 -21 3 1239 341 279 9 9 chr5 85723012 85723117 -66814142 + MLT1A1 LTR MaLR 299 403 -5 3 1239 195 69 0 0 chr5 85724091 85724120 -66813139 + (ATG)n Simple_repeat Simple_repeat 3 31 0 3 1239 277 248 9 69 chr5 85724188 85724271 -66812988 - B1F SINE Alu -66 83 1 3 1239 353 22 22 0 chr5 85724717 85724763 -66812496 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 3 1239 1058 238 94 45 chr5 85725969 85726277 -66810982 - Lx2B LINE L1 -5 6995 6673 3 1239 378 0 0 0 chr5 85726293 85726335 -66810924 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1239 640 114 246 0 chr5 85726335 85726449 -66810810 + B1_Mm SINE Alu 1 142 -5 3 1239 2422 103 0 6 chr5 85726538 85726888 -66810371 + L1_Mus4 LINE L1 6289 6636 0 3 1239 329 266 68 42 chr5 85726931 85727049 -66810210 + MT2B LTR ERVL 138 258 -343 3 1239 861 70 0 26 chr5 85726979 85727096 -66810163 + B1_Mus1 SINE Alu 35 148 0 3 1239 415 37 36 36 chr5 85727096 85727180 -66810079 + (CAAAA)n Simple_repeat Simple_repeat 1 84 0 3 1239 180 0 0 0 chr5 85727180 85727200 -66810059 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 3 1239 210 37 0 0 chr5 85727520 85727547 -66809712 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1239 280 236 130 33 chr5 85727691 85727783 -66809476 + Lx8 LINE L1 6922 7022 -451 3 1239 423 276 28 19 chr5 85728044 85728151 -66809108 + PB1D9 SINE Alu 12 119 -1 3 1239 511 266 150 26 chr5 85728612 85728805 -66808454 + ID_B1 SINE B4 2 218 -6 3 1239 22 0 0 0 chr5 85729234 85729256 -66808003 + AT_rich Low_complexity Low_complexity 1 22 0 3 1239 27 0 0 0 chr5 85729831 85729858 -66807401 + AT_rich Low_complexity Low_complexity 1 27 0 3 1239 991 218 233 36 chr5 85730341 85730844 -66806415 + RMER20B LTR ERVK 1 602 -25 3 1239 263 177 42 0 chr5 85730911 85731007 -66806252 + (TA)n Simple_repeat Simple_repeat 2 101 0 3 1239 244 78 61 30 chr5 85731158 85731224 -66806035 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 3 1239 3482 75 4 2 chr5 85731457 85731927 -66805332 + L1_Mus2 LINE L1 6095 6565 -1 3 1239 3607 60 25 0 chr5 85732173 85732643 -66804616 + L1_Mus1 LINE L1 6086 6567 0 3 1239 22 0 0 0 chr5 85732807 85732829 -66804430 + AT_rich Low_complexity Low_complexity 1 22 0 3 1239 7095 143 63 11 chr5 85733189 85733296 -66803963 - Lx2 LINE L1 -1 6996 6867 3 1239 186 43 0 0 chr5 85733296 85733319 -66803940 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 3 1239 7095 143 63 11 chr5 85733319 85734431 -66802828 - Lx2 LINE L1 -131 6866 5713 3 1239 303 189 63 13 chr5 85734432 85734524 -66802735 - MLT1A1 LTR MaLR -42 366 245 3 1239 277 346 0 0 chr5 85734867 85734948 -66802311 + LTR16A LTR ERVL 5 85 -366 3 1239 15032 115 7 4 chr5 85735402 85738378 -66798881 - L1_Mus2 LINE L1 -1 6565 3583 3 1239 3314 145 24 125 chr5 85738378 85739196 -66798063 + RMER17A LTR ERVK 1 736 -15 3 1239 9967 188 34 141 chr5 85739225 85740666 -66796593 - L1_Mus2 LINE L1 -2296 3590 2330 3 1239 452 305 8 8 chr5 85740666 85740795 -66796464 - B3A SINE B2 0 198 70 3 1239 9967 188 34 141 chr5 85740795 85743205 -66794054 - L1_Mus2 LINE L1 -2296 2329 218 3 1239 30 0 0 0 chr5 85743683 85743713 -66793546 + AT_rich Low_complexity Low_complexity 1 30 0 3 1239 291 277 79 102 chr5 85744825 85745002 -66792257 + L1M7 LINE L1 410 582 -5636 3 1239 810 81 0 0 chr5 85745208 85745319 -66791940 + (GA)n Simple_repeat Simple_repeat 2 112 0 3 1239 9590 198 44 18 chr5 85745702 85747493 -66789766 - Lx6 LINE L1 -1226 6234 4288 3 1239 351 0 0 0 chr5 85747493 85747532 -66789727 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1239 9590 194 38 18 chr5 85747532 85748133 -66789126 - Lx6 LINE L1 -1593 4287 3679 3 1239 223 333 50 19 chr5 85748375 85748503 -66788756 + MIRb SINE MIR 51 173 -89 3 1239 663 13 0 0 chr5 85748986 85749062 -66788197 + (TCC)n Simple_repeat Simple_repeat 3 78 0 3 1239 282 303 0 0 chr5 85749159 85749235 -66788024 + tRNA-Lys-AAG tRNA tRNA 1 76 0 3 1239 352 299 63 14 chr5 85749244 85749370 -66787889 - RMER4B LTR ERVK -4 581 343 3 1239 248 78 78 0 chr5 85749455 85749519 -66787740 + (CAAAC)n Simple_repeat Simple_repeat 2 70 0 3 1239 807 255 88 48 chr5 85749554 85749826 -66787433 - RMER4B LTR ERVK -286 299 17 3 1239 4800 95 6 4 chr5 85750188 85750884 -66786375 + L1_Mus1 LINE L1 5870 6566 -1 3 1239 477 0 0 0 chr5 85751030 85751083 -66786176 + (GGA)n Simple_repeat Simple_repeat 3 55 0 3 1239 4914 271 32 32 chr5 85751097 85752570 -66784689 + MurERV4-int LTR ERVK 561 2033 -3227 3 1239 677 97 0 10 chr5 85752583 85752687 -66784572 + (GGAA)n Simple_repeat Simple_repeat 4 106 0 3 1239 1121 98 0 11 chr5 85752694 85752869 -66784390 + (GGAGAA)n Simple_repeat Simple_repeat 6 178 0 3 1239 262 332 73 61 chr5 85752878 85753205 -66784054 - RMER5 LTR ERV1 -79 455 125 3 1239 413 311 0 16 chr5 85753227 85753351 -66783908 - B3 SINE B2 -93 123 2 3 1239 238 213 0 0 chr5 85753563 85753610 -66783649 + L1VL2 LINE L1 521 567 -5768 3 1239 2696 158 21 13 chr5 85753859 85754416 -66782843 + MusHAL1 LINE L1 374 935 -1777 3 1239 663 136 8 0 chr5 85754410 85754528 -66782731 - MusHAL1 LINE L1 -2155 557 439 3 1239 3708 152 20 17 chr5 85754528 85755184 -66782075 + Lx2B LINE L1 6328 6985 -15 3 1239 25 31 0 0 chr5 85755214 85755246 -66782013 + AT_rich Low_complexity Low_complexity 1 32 0 3 1239 24 32 0 0 chr5 85755710 85755741 -66781518 + AT_rich Low_complexity Low_complexity 1 31 0 3 1239 26 30 0 0 chr5 85755760 85755793 -66781466 + AT_rich Low_complexity Low_complexity 1 33 0 3 1239 10855 24 0 0 chr5 85756130 85758083 -66779176 - L1Md_T LINE L1 0 6582 4630 3 1239 180 27 53 26 chr5 85758172 85758210 -66779049 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 3 1239 347 365 32 23 chr5 85758449 85758665 -66778594 - MLT1D LTR MaLR -5 500 283 3 1239 14248 75 2 6 chr5 85759153 85761763 -66775496 - L1Md_F2 LINE L1 -2 6580 3984 3 1239 495 0 0 0 chr5 85764051 85764106 -66773153 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1239 421 352 76 55 chr5 85764109 85764568 -66772691 - L1ME1 LINE L1 -10 6169 5701 3 1239 1075 214 198 59 chr5 85765673 85765946 -66771313 - Lx6 LINE L1 -386 7074 6752 3 1239 231 36 0 0 chr5 85765946 85765974 -66771285 + (TAG)n Simple_repeat Simple_repeat 1 28 0 3 1239 1075 214 198 59 chr5 85765974 85766038 -66771221 - Lx6 LINE L1 -709 6751 6690 3 1239 293 330 0 0 chr5 85766041 85766129 -66771130 + Lx6 LINE L1 6613 6700 -760 3 1239 199 398 29 10 chr5 85766255 85766359 -66770900 - MER5B DNA MER1_type 0 178 73 3 1239 319 283 113 40 chr5 85766396 85766547 -66770712 + RSINE1 SINE B4 4 165 0 3 1239 294 224 26 0 chr5 85766878 85766994 -66770265 + (TA)n Simple_repeat Simple_repeat 1 119 0 3 1239 189 0 0 0 chr5 85768431 85768452 -66768807 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 1239 21 0 0 0 chr5 85768587 85768608 -66768651 + AT_rich Low_complexity Low_complexity 1 21 0 4 1239 22 0 0 0 chr5 85768680 85768702 -66768557 + AT_rich Low_complexity Low_complexity 1 22 0 4 1239 23 68 0 0 chr5 85769081 85769125 -66768134 + AT_rich Low_complexity Low_complexity 1 44 0 4 1239 291 300 19 65 chr5 85769424 85769531 -66767728 + B2_Mm1t SINE B2 3 104 -89 4 1239 2248 132 93 38 chr5 85769557 85769975 -66767284 + MT2C_Mm LTR ERVL 3 443 -32 4 1239 392 312 9 0 chr5 85769975 85770084 -66767175 + B3 SINE B2 107 216 0 4 1239 291 28 0 0 chr5 85770138 85770174 -66767085 + (TC)n Simple_repeat Simple_repeat 2 37 0 4 1239 243 0 0 0 chr5 85771385 85771412 -66765847 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 1239 279 54 0 0 chr5 85771412 85771448 -66765811 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1239 501 250 10 0 chr5 85771978 85772082 -66765177 - B1_Mus1 SINE Alu -22 126 22 4 1239 416 184 26 0 chr5 85772735 85772811 -66764448 - Lx LINE L1 -400 6254 6177 4 1239 229 213 21 0 chr5 85773046 85773093 -66764166 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1239 4440 90 2 0 chr5 85773093 85773693 -66763566 + L1_Mm LINE L1 5213 5813 -70 4 1239 483 189 22 17 chr5 85773745 85773923 -66763336 + (CA)n Simple_repeat Simple_repeat 1 179 0 4 1239 261 0 0 0 chr5 85773962 85773991 -66763268 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1239 333 0 0 0 chr5 85776408 85776445 -66760814 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 1239 387 202 0 0 chr5 85776501 85776595 -66760664 + (TA)n Simple_repeat Simple_repeat 2 95 0 4 1239 638 225 6 0 chr5 85776594 85776772 -66760487 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1239 283 154 31 0 chr5 85776778 85776843 -66760416 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 4 1239 360 0 0 0 chr5 85776856 85776896 -66760363 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1239 937 214 24 179 chr5 85777197 85777483 -66759776 - RMER19C LTR ERVK -332 279 45 4 1239 231 88 0 0 chr5 85777483 85777517 -66759742 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1239 937 214 24 179 chr5 85777517 85777560 -66759699 - RMER19C LTR ERVK -567 44 2 4 1239 3361 87 4 17 chr5 85777811 85778290 -66758969 - L1_Mus3 LINE L1 -6 6632 6160 4 1239 24 0 0 0 chr5 85779625 85779649 -66757610 + AT_rich Low_complexity Low_complexity 1 24 0 4 1239 364 345 70 21 chr5 85780625 85780868 -66756391 - Lx7 LINE L1 -485 7211 6957 4 1239 198 103 0 0 chr5 85780914 85780943 -66756316 + (TCTCCC)n Simple_repeat Simple_repeat 6 34 0 4 1239 576 321 76 86 chr5 85781215 85781716 -66755543 - Lx8 LINE L1 -20 7453 6958 4 1239 330 337 0 11 chr5 85781728 85781821 -66755438 - B4A SINE B4 -199 93 2 4 1239 22 0 0 0 chr5 85783148 85783170 -66754089 + AT_rich Low_complexity Low_complexity 1 22 0 4 1239 593 114 9 0 chr5 85783265 85783370 -66753889 + (TTCC)n Simple_repeat Simple_repeat 1 106 0 4 1239 1012 62 7 14 chr5 85783374 85783520 -66753739 + (TTTC)n Simple_repeat Simple_repeat 2 146 0 4 1239 520 257 174 8 chr5 85783645 85783892 -66753367 - Lx7 LINE L1 -1492 6204 5917 4 1239 255 264 81 0 chr5 85783944 85784031 -66753228 + Lx7 LINE L1 7601 7694 -2 4 1239 28778 30 1 0 chr5 85784076 85787528 -66749731 + L1Md_A LINE L1 2133 5586 -297 4 1239 8444 30 0 1 chr5 85787528 85788525 -66748734 + L1Md_A LINE L1 5587 6582 0 4 1239 4615 84 11 12 chr5 85788533 85789175 -66748084 + L1Md_F2 LINE L1 5941 6581 -1 4 1239 249 108 0 0 chr5 85789974 85790011 -66747248 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 1239 277 267 21 72 chr5 85790087 85790184 -66747075 - RMER30 DNA MER1_type -27 175 84 4 1239 293 252 70 70 chr5 85790234 85790349 -66746910 + L1MA8 LINE L1 6172 6286 -5 4 1239 4104 237 65 25 chr5 85790478 85791583 -66745676 - Lx6 LINE L1 -480 6980 5832 4 1239 247 316 26 0 chr5 85791740 85791816 -66745443 - BC1_Mm scRNA scRNA -70 82 5 4 1239 1247 245 84 110 chr5 85791916 85792535 -66744724 + Lx7 LINE L1 7088 7690 -6 4 1239 535 48 44 79 chr5 85792858 85792972 -66744287 + L1Md_F2 LINE L1 6471 6580 -2 4 1239 243 273 25 38 chr5 85793577 85793657 -66743602 + LTR52 LTR ERVL 11 89 -332 4 1239 497 189 6 0 chr5 85793767 85793926 -66743333 + CT-rich Low_complexity Low_complexity 1 160 0 4 1239 372 327 99 35 chr5 85793928 85794099 -66743160 - B3 SINE B2 0 216 35 4 1239 1048 201 32 5 chr5 85794154 85794374 -66742885 - URR1A DNA MER1_type 0 226 1 4 1239 287 324 10 19 chr5 85794715 85794819 -66742440 + B4A SINE B4 3 105 -187 4 1239 864 310 68 35 chr5 85794935 85795330 -66741929 - Lx7 LINE L1 -584 7112 6705 4 1239 245 272 5 5 chr5 85795327 85795408 -66741851 + Lx8 LINE L1 5841 5924 -1720 4 1239 183 100 0 0 chr5 85795626 85795656 -66741603 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1239 852 272 131 3 chr5 85796821 85797127 -66740132 + RLTR18B LTR ERVK 168 512 0 4 1239 1413 305 82 12 chr5 85797131 85797708 -66739551 + Lx8 LINE L1 6329 6945 -528 4 1239 1739 178 25 0 chr5 85797708 85798029 -66739230 - ORR1A4 LTR MaLR 0 329 1 4 1239 5430 200 29 93 chr5 85798029 85799360 -66737899 - ORR1A4-int LTR MaLR 0 1963 718 4 1239 1224 166 62 62 chr5 85799316 85799573 -66737686 - MT2B LTR ERVL -310 291 35 4 1239 3284 191 21 77 chr5 85799387 85800188 -66737071 - ORR1A4-int LTR MaLR -1157 806 50 4 1239 5405 100 25 13 chr5 85800188 85800981 -66736278 + L1_Mus3 LINE L1 5834 6636 -2 4 1239 222 160 0 0 chr5 85800988 85801038 -66736221 + A-rich Low_complexity Low_complexity 1 50 0 4 1239 1718 156 63 0 chr5 85801080 85801382 -66735877 - ORR1A4 LTR MaLR -8 321 1 4 1239 634 314 88 33 chr5 85801431 85801876 -66735383 + Lx8 LINE L1 6994 7471 -2 4 1239 625 252 0 0 chr5 85801887 85802014 -66735245 - Lx6 LINE L1 -735 6725 6599 4 1239 1190 282 40 17 chr5 85802018 85802371 -66734888 + Lx6 LINE L1 7097 7457 -3 4 1239 754 305 92 10 chr5 85802778 85803073 -66734186 - MER2 DNA MER2_type -16 329 11 4 1239 1858 230 30 5 chr5 85803616 85803988 -66733271 + ORR1B1 LTR MaLR 6 386 -8 4 1239 7028 168 25 37 chr5 85804196 85805726 -66731533 - L1_Mus4 LINE L1 -4 7046 5579 4 1239 1440 85 0 0 chr5 85805726 85805914 -66731345 - B2_Mm1a SINE B2 -4 189 2 4 1239 2740 162 8 28 chr5 85805914 85806097 -66731162 - L1_Mus4 LINE L1 -305 5578 5398 4 1239 2060 147 9 0 chr5 85806087 85806428 -66730831 - L1_Mus4 LINE L1 -1157 4726 4383 4 1239 31438 117 8 11 chr5 85806425 85810756 -66726503 + L1Md_F LINE L1 98 4077 -1806 4 1239 2411 108 82 170 chr5 85810756 85811315 -66725944 + RLTR1B LTR ERV1 3 512 0 4 1239 31438 90 2 8 chr5 85811315 85812917 -66724342 + L1Md_F LINE L1 4078 5674 -209 4 1239 6981 174 13 1 chr5 85812915 85814230 -66723029 + L1_Mm LINE L1 3068 4398 -1485 4 1239 233 0 62 0 chr5 85814232 85814264 -66722995 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1239 10994 106 8 7 chr5 85814273 85817354 -66719905 - L1Md_F2 LINE L1 -11 6571 618 4 1239 2040 217 17 0 chr5 85817335 85817740 -66719519 - Lx5 LINE L1 -444 6606 6195 4 1239 1901 193 49 4 chr5 85817742 85818171 -66719088 + Lx5 LINE L1 5669 6136 -1324 4 1239 2294 74 3 0 chr5 85818642 85818938 -66718321 + L1Md_F2 LINE L1 5985 6281 -301 4 1239 398 229 45 119 chr5 85819518 85819652 -66717607 + MT2B LTR ERVL 155 278 -323 4 1239 812 182 0 0 chr5 85819541 85819678 -66717581 + B1_Mus1 SINE Alu 11 147 -1 4 1239 249 212 157 29 chr5 85819732 85819834 -66717425 - Lx6 LINE L1 -651 6809 6695 4 1239 1576 267 91 17 chr5 85819849 85820254 -66717005 + Lx5 LINE L1 6542 7319 -141 4 1239 423 0 0 0 chr5 85820254 85820301 -66716958 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1239 1576 258 94 15 chr5 85820301 85820421 -66716838 + Lx5 LINE L1 7320 7460 0 4 1239 519 60 0 0 chr5 85821239 85821306 -66715953 + (TA)n Simple_repeat Simple_repeat 2 68 0 4 1239 258 308 190 24 chr5 85821672 85821925 -66715334 + RMER5 LTR ERV1 202 496 -38 4 1239 216 0 0 0 chr5 85822367 85822391 -66714868 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1239 1019 74 0 103 chr5 85822394 85822559 -66714700 - B1_Mus1 SINE Alu 0 148 1 4 1239 369 357 70 0 chr5 85822712 85822883 -66714376 + B3A SINE B2 1 183 -15 4 1239 447 68 0 0 chr5 85823050 85823109 -66714150 + (TA)n Simple_repeat Simple_repeat 2 60 0 4 1239 258 308 190 24 chr5 85823475 85823728 -66713531 + RMER5 LTR ERV1 202 496 -38 4 1239 216 0 0 0 chr5 85824170 85824194 -66713065 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1239 1019 74 0 103 chr5 85824197 85824362 -66712897 - B1_Mus1 SINE Alu 0 148 1 4 1239 369 357 70 0 chr5 85824515 85824686 -66712573 + B3A SINE B2 1 183 -15 4 1239 279 0 0 0 chr5 85824716 85824747 -66712512 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 4 1239 721 294 163 41 chr5 85825751 85826162 -66711097 + Lx8 LINE L1 6326 6786 -687 4 1239 760 298 104 36 chr5 85826168 85826505 -66710754 + Lx8 LINE L1 7114 7473 0 4 1239 611 101 71 0 chr5 85827323 85827566 -66709693 + (TAGA)n Simple_repeat Simple_repeat 1 260 0 4 1239 342 364 11 17 chr5 85827701 85827880 -66709379 - Lx9 LINE L1 -342 7302 7125 4 1239 561 262 41 14 chr5 85828579 85828726 -66708533 + B3A SINE B2 2 152 -46 4 1239 1077 306 76 2 chr5 85829775 85830196 -66707063 + Lx6 LINE L1 5978 6451 -599 4 1239 1135 283 107 18 chr5 85830207 85830378 -66706881 + Lx6 LINE L1 6945 7117 -343 4 1239 573 15 0 0 chr5 85830378 85830444 -66706815 + (TA)n Simple_repeat Simple_repeat 2 67 0 4 1239 1135 283 107 18 chr5 85830444 85830654 -66706605 + Lx6 LINE L1 7118 7360 -100 4 1239 1674 163 22 22 chr5 85830654 85830967 -66706292 + ORR1B2 LTR MaLR 55 367 0 4 1239 1387 84 133 2 chr5 85831098 85831328 -66705931 - LTRIS5 LTR ERV1 -14 489 224 4 1239 2713 89 44 3 chr5 85831955 85832339 -66704920 + MTB LTR MaLR 1 400 0 4 1239 396 0 0 0 chr5 85834664 85834708 -66702551 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1239 3823 57 6 0 chr5 85836456 85836931 -66700328 + L1Md_F3 LINE L1 6106 6583 -1 4 1239 6454 160 25 1 chr5 85836962 85838147 -66699112 - L1_Mur1 LINE L1 -418 5468 4256 4 1239 458 156 0 18 chr5 85838140 85838237 -66699022 + L1_Mur1 LINE L1 5514 5631 -552 4 1239 205 326 22 0 chr5 85838329 85838418 -66698841 + CT-rich Low_complexity Low_complexity 5 95 0 4 1239 747 206 14 0 chr5 85839413 85839559 -66697700 + B1_Mur3 SINE Alu 2 149 0 4 1239 225 94 0 0 chr5 85839561 85839593 -66697666 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 4 1239 723 64 9 18 chr5 85839593 85839705 -66697554 + (GGAGA)n Simple_repeat Simple_repeat 2 112 0 4 1239 912 67 0 0 chr5 85839708 85839828 -66697431 + (GAAAA)n Simple_repeat Simple_repeat 2 121 0 4 1239 251 336 0 9 chr5 85840739 85840754 -66696505 + (TATATG)n Simple_repeat Simple_repeat 2 15 0 4 1239 4348 113 14 55 chr5 85840754 85841537 -66695722 - RMER17A LTR ERVK 0 751 1 4 1239 251 336 0 9 chr5 85841537 85841626 -66695633 + (TATATG)n Simple_repeat Simple_repeat 3 91 0 5 1239 753 268 77 130 chr5 85841833 85842224 -66695035 - ORR1D2 LTR MaLR 0 370 1 5 1239 244 291 64 76 chr5 85843617 85843788 -66693471 + L1_Rod LINE L1 596 764 -6844 5 1239 956 275 47 10 chr5 85843824 85844122 -66693137 + L1_Rod LINE L1 742 1050 -6558 5 1239 352 281 64 29 chr5 85844175 85844347 -66692912 + L1_Rod LINE L1 1223 1400 -4447 5 1239 260 245 30 20 chr5 85844356 85844456 -66692803 + L1_Rod LINE L1 4346 4446 -1401 5 1239 538 228 76 15 chr5 85844471 85844668 -66692591 + L1_Rod LINE L1 4759 5031 -1115 5 1239 384 274 103 26 chr5 85844721 85844837 -66692422 + Lx9 LINE L1 6362 6486 -1158 5 1239 1187 199 72 16 chr5 85844827 85845077 -66692182 - L1VL4 LINE L1 -6038 264 1 5 1239 315 65 0 0 chr5 85845728 85845774 -66691485 + (T)n Simple_repeat Simple_repeat 1 46 0 5 1239 6529 64 0 0 chr5 85845789 85846618 -66690641 - L1Md_T LINE L1 0 6582 5754 5 1239 8005 29 0 0 chr5 85846632 85847600 -66689659 + L1_Mm LINE L1 2348 3315 -2568 5 1239 5538 146 76 32 chr5 85847827 85849700 -66687559 + Lx2 LINE L1 4968 6886 -111 5 1239 1605 151 34 0 chr5 85849696 85849961 -66687298 + Lx2 LINE L1 6370 6643 -354 5 1239 1407 111 28 0 chr5 85849961 85850178 -66687081 + Lx2 LINE L1 6775 6997 0 5 1239 22 35 0 0 chr5 85850198 85850227 -66687032 + AT_rich Low_complexity Low_complexity 1 29 0 5 154 6156 39 0 3 chr5 85851489 85852226 -66685033 - L1Md_F2 LINE L1 -12 6570 5836 5 1240 1272 257 46 53 chr5 85852490 85852925 -66684334 - Charlie1b DNA MER1_type -79 444 13 5 1240 3110 79 5 2 chr5 85853738 85854155 -66683104 + L1_Mus3 LINE L1 6215 6632 -6 5 1240 26 30 0 0 chr5 85854181 85854214 -66683045 + AT_rich Low_complexity Low_complexity 1 33 0 5 1240 2920 227 78 49 chr5 85854253 85855041 -66682218 + RLTR25B LTR ERVK 16 961 -142 5 1240 540 277 118 47 chr5 85855253 85855356 -66681903 + RLTR25B LTR ERVK 757 869 -159 5 1240 738 113 0 0 chr5 85855356 85855471 -66681788 + (CA)n Simple_repeat Simple_repeat 2 116 0 5 1240 540 277 118 47 chr5 85855471 85855621 -66681638 + RLTR25B LTR ERVK 870 1027 -1 5 1240 615 312 7 0 chr5 85855757 85855898 -66681361 - B1_Mur1 SINE Alu -7 142 1 5 1240 262 337 39 19 chr5 85856263 85856366 -66680893 + MTD LTR MaLR 7 111 -308 5 1240 180 0 0 0 chr5 85856381 85856401 -66680858 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1240 234 125 0 0 chr5 85856406 85856454 -66680805 + (T)n Simple_repeat Simple_repeat 1 48 0 5 1240 3564 79 2 2 chr5 85856494 85856966 -66680293 - L1_Mus1 LINE L1 0 6567 6096 5 1240 238 320 84 37 chr5 85856966 85857073 -66680186 + MTD LTR MaLR 85 196 -183 5 1240 1117 95 0 0 chr5 85857147 85857295 -66679964 + B1_Mus1 SINE Alu 1 148 0 5 1240 363 52 0 94 chr5 85857321 85857385 -66679874 + L1_Mus1 LINE L1 6508 6565 -2 5 1240 31 0 0 0 chr5 85857490 85857521 -66679738 + AT_rich Low_complexity Low_complexity 1 31 0 5 1240 186 103 0 0 chr5 85857728 85857757 -66679502 + (CATA)n Simple_repeat Simple_repeat 1 29 0 5 1240 636 293 54 15 chr5 85857785 85858008 -66679251 - MLT2B3 LTR ERVL -208 346 116 5 1240 340 236 55 0 chr5 85858022 85858132 -66679127 - Lx9 LINE L1 -1 7643 7528 5 1240 457 65 64 9 chr5 85858142 85858251 -66679008 + (TA)n Simple_repeat Simple_repeat 1 115 0 5 1240 216 97 0 0 chr5 85858262 85858293 -66678966 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1240 1064 192 39 15 chr5 85858297 85858556 -66678703 - Lx9 LINE L1 -176 7468 7204 5 1240 2879 195 11 35 chr5 85858595 85859169 -66678090 - RLTR20B2 LTR ERVK 0 560 1 5 1240 312 217 0 14 chr5 85859169 85859235 -66678024 - MLT2B3 LTR ERVL -478 76 12 5 1240 2018 203 5 16 chr5 85859272 85859653 -66677606 - Lx4A LINE L1 -3 7055 6679 5 1240 2173 244 66 8 chr5 85859835 85860458 -66676801 + Lx8 LINE L1 5091 5752 -1721 5 1240 421 407 53 47 chr5 85860641 85860919 -66676340 + MLT1H1 LTR MaLR 2 284 -307 5 1240 467 226 17 0 chr5 85862884 85862999 -66674260 + Lx9 LINE L1 7360 7476 -168 5 1240 315 0 0 0 chr5 85863000 85863035 -66674224 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1240 333 0 0 0 chr5 85863035 85863071 -66674188 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1240 253 141 137 98 chr5 85863071 85863173 -66674086 + Lx9 LINE L1 7523 7628 -16 5 1240 792 83 0 0 chr5 85863469 85863578 -66673681 + (GGGAGA)n Simple_repeat Simple_repeat 4 112 0 5 1240 527 192 25 8 chr5 85864676 85864797 -66672462 - URR1B DNA MER1_type -6 219 97 5 1240 322 86 0 54 chr5 85864799 85864873 -66672386 + (TTTTG)n Simple_repeat Simple_repeat 2 71 0 5 1240 226 0 29 29 chr5 85865029 85865064 -66672195 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1240 704 173 65 0 chr5 85865081 85865220 -66672039 - B1_Mur3 SINE Alu -1 148 1 5 1240 1610 92 0 5 chr5 85865379 85865597 -66671662 + L1_Mus1 LINE L1 5997 6213 -354 5 1240 811 78 0 0 chr5 85865597 85865713 -66671546 + L1_Mus1 LINE L1 6448 6563 -4 5 1240 2511 168 20 13 chr5 85866188 85866646 -66670613 - Lx2B LINE L1 -4 6996 6536 5 1240 309 331 46 8 chr5 85866827 85867086 -66670173 + L1M3 LINE L1 2620 2888 -3252 5 1240 301 253 175 56 chr5 85867183 85867417 -66669842 + L1M3 LINE L1 3051 3312 -2831 5 1240 422 167 0 0 chr5 85867517 85867595 -66669664 + L1_Mur2 LINE L1 4406 4483 -1394 5 1240 1272 201 149 0 chr5 85869376 85869504 -66667755 - Lx9 LINE L1 -1 7643 7480 5 1240 314 80 20 0 chr5 85869504 85869554 -66667705 + (TA)n Simple_repeat Simple_repeat 1 51 0 5 1240 1272 201 149 0 chr5 85869554 85869748 -66667511 - Lx9 LINE L1 -165 7479 7274 5 1240 464 331 82 71 chr5 85870509 85870541 -66666718 + B4 SINE B4 5 32 -260 5 1240 1314 225 53 37 chr5 85870541 85870919 -66666340 - ORR1C2 LTR MaLR 0 384 1 5 1240 464 331 82 71 chr5 85870919 85871153 -66666106 + B4 SINE B4 33 274 -18 5 1240 5090 87 7 6 chr5 85871271 85871997 -66665262 - L1_Mus1 LINE L1 -1 6566 5840 5 1240 533 314 50 70 chr5 85872078 85872277 -66664982 - B3A SINE B2 0 198 4 5 1240 1019 306 48 99 chr5 85872568 85873257 -66664002 - L1MA4 LINE L1 -1143 5915 5246 5 1240 1390 88 10 15 chr5 85873257 85873453 -66663806 - B2_Mm2 SINE B2 0 195 1 5 1240 672 265 28 179 chr5 85873453 85873582 -66663677 - L1MA4 LINE L1 -867 5276 5155 5 1240 23 33 0 0 chr5 85873742 85873772 -66663487 + AT_rich Low_complexity Low_complexity 1 30 0 5 1240 23 33 0 0 chr5 85874231 85874261 -66662998 + AT_rich Low_complexity Low_complexity 1 30 0 5 1240 1992 122 48 0 chr5 85875968 85876280 -66660979 + ORR1A2 LTR MaLR 1 327 0 5 1240 504 154 0 0 chr5 85876470 85876574 -66660685 + (TG)n Simple_repeat Simple_repeat 1 104 0 5 1240 491 343 7 7 chr5 85877195 85877336 -66659923 - RSINE1 SINE B4 -21 144 4 5 1240 36816 21 3 7 chr5 85877701 85882689 -66654570 + L1Md_A LINE L1 631 5586 -297 5 1240 8427 35 0 0 chr5 85882689 85883685 -66653574 + L1Md_A LINE L1 5587 6582 0 5 1240 367 302 35 0 chr5 85883756 85883842 -66653417 - PB1D10 SINE Alu -9 108 20 5 1240 496 320 64 24 chr5 85884202 85884532 -66652727 - RLTR15 LTR ERVK -16 343 1 5 1240 396 260 40 50 chr5 85885530 85885631 -66651628 - MER2 DNA MER2_type -1 344 245 5 1240 1909 174 42 8 chr5 85885676 85886030 -66651229 + MTC LTR MaLR 1 366 -55 5 1240 234 0 0 0 chr5 85886041 85886067 -66651192 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1240 382 341 46 17 chr5 85886075 85886248 -66651011 - MER2 DNA MER2_type -146 199 22 5 1240 28 86 0 0 chr5 85887930 85888000 -66649259 + AT_rich Low_complexity Low_complexity 1 70 0 5 1240 1140 160 16 0 chr5 85888689 85888876 -66648383 - B2_Mm2 SINE B2 -5 190 1 5 1240 21 36 0 0 chr5 85888965 85888993 -66648266 + AT_rich Low_complexity Low_complexity 1 28 0 5 1240 1913 137 101 3 chr5 85889159 85889496 -66647763 - Lx LINE L1 -16 6638 6269 5 1240 439 255 61 0 chr5 85890625 85890723 -66646536 + B1F2 SINE Alu 46 149 0 5 1240 5964 212 63 11 chr5 85890782 85892182 -66645077 - Lx4B LINE L1 0 7058 5587 5 1240 3914 64 2 28 chr5 85892430 85892961 -66644298 - L1Md_F2 LINE L1 -1 6581 6065 5 1240 291 28 0 0 chr5 85893522 85893558 -66643701 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 5 1240 204 67 0 0 chr5 85893731 85893761 -66643498 + (TTG)n Simple_repeat Simple_repeat 2 31 0 5 1240 2688 147 11 34 chr5 85893773 85894246 -66643013 - Lx3C LINE L1 -7 6969 6508 5 1240 494 47 0 0 chr5 85894246 85894310 -66642949 - Lx3B LINE L1 -662 6311 6248 5 1240 1524 32 0 5 chr5 85894319 85894508 -66642751 - L1Md_F2 LINE L1 -14 6568 6381 5 1240 3925 107 21 52 chr5 85894514 85895278 -66641981 + Lx3C LINE L1 5505 6244 -732 5 1240 1396 130 49 38 chr5 85895301 85895589 -66641670 + Lx3C LINE L1 6361 6651 -3 5 1240 5226 133 5 8 chr5 85895622 85896443 -66640816 + Lx3B LINE L1 6153 6970 -3 5 1240 378 0 0 0 chr5 85896451 85896493 -66640766 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 5 1240 206 170 0 21 chr5 85896496 85896544 -66640715 + A-rich Low_complexity Low_complexity 6 52 0 5 1240 209 290 89 79 chr5 85896680 85896781 -66640478 - MIRc SINE MIR -97 171 70 5 1240 784 269 39 76 chr5 85898025 85898515 -66638744 - RLTR11A2 LTR ERVK -65 388 1 5 1240 295 365 18 161 chr5 85899006 85899342 -66637917 + B4 SINE B4 1 288 -4 5 1240 256 325 0 0 chr5 85899350 85899430 -66637829 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 1240 5060 114 5 8 chr5 85900169 85900917 -66636342 + Lx3_Mus LINE L1 6264 7009 0 5 1240 8173 139 36 60 chr5 85901282 85904105 -66633154 - L1_Mus3 LINE L1 0 6638 3941 5 1240 998 242 0 29 chr5 85904116 85904392 -66632867 + L1VL4 LINE L1 434 701 -5601 5 1240 3040 12 0 0 chr5 85906120 85906457 -66630802 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1240 53070 24 11 7 chr5 85906457 85912906 -66624353 - IAPEz-int LTR ERVK 0 6481 8 5 1240 3040 12 0 0 chr5 85912906 85913243 -66624016 - IAPLTR1a_Mm LTR ERVK 0 337 1 5 1240 3633 79 6 13 chr5 85913265 85913792 -66623467 - Lx3_Mus LINE L1 -397 6612 6090 5 1240 1473 90 18 9 chr5 85913793 85914017 -66623242 + Lx3_Mus LINE L1 6612 6837 -172 5 1240 1180 247 36 92 chr5 85914139 85914531 -66622728 - MTE2a LTR MaLR -9 370 1 5 1240 1179 311 141 35 chr5 85914537 85915317 -66621942 - MTE2a-int LTR MaLR -23 1347 342 5 1240 554 168 149 16 chr5 85915353 85915474 -66621785 - RMER6D LTR ERVK 0 720 584 5 1240 635 332 51 132 chr5 85915945 85916363 -66620896 + MLT1E2 LTR MaLR 70 449 -175 5 1240 373 274 65 22 chr5 85916693 85916831 -66620428 + MIR SINE MIR 63 206 -56 5 1240 459 0 0 0 chr5 85917727 85917778 -66619481 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 5 1240 405 300 22 51 chr5 85917919 85918056 -66619203 - RMER20B LTR ERVK -34 593 461 5 1240 1528 288 38 21 chr5 85918068 85918600 -66618659 + Lx9 LINE L1 6457 6997 -647 5 1240 1046 97 7 0 chr5 85918601 85918746 -66618513 + B1_Mus1 SINE Alu 3 148 0 5 1240 323 0 0 45 chr5 85918746 85918790 -66618469 + (CAAAAA)n Simple_repeat Simple_repeat 6 47 0 5 1240 699 120 0 0 chr5 85918788 85918896 -66618363 + (GGAA)n Simple_repeat Simple_repeat 3 110 0 6 1240 675 168 0 55 chr5 85918896 85919041 -66618218 + Lx9 LINE L1 6985 7121 -523 5 1240 3026 68 31 0 chr5 85919031 85919062 -66618197 - L1_Mus3 LINE L1 -222 6416 6386 6 1240 274 23 47 0 chr5 85919062 85919105 -66618154 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 6 1240 3986 70 81 0 chr5 85919105 85920112 -66617147 - L1_Mus3 LINE L1 -253 6385 5296 6 1240 1037 119 67 0 chr5 85920112 85920305 -66616954 + L1_Mus3 LINE L1 6433 6638 0 6 1240 321 68 0 0 chr5 85920726 85920770 -66616489 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1240 321 169 0 0 chr5 85920775 85920834 -66616425 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1240 568 317 131 19 chr5 85921619 85921886 -66615373 + RMER15 LTR ERVL 276 572 -3 6 1240 302 237 73 73 chr5 85922249 85922331 -66614928 - RMER15 LTR ERVL 0 575 494 6 1240 1098 73 0 0 chr5 85924305 85924442 -66612817 - B1_Mm SINE Alu -10 137 1 6 1240 315 0 0 0 chr5 85925485 85925520 -66611739 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1240 270 57 37 19 chr5 85926695 85926749 -66610510 + (CAAAA)n Simple_repeat Simple_repeat 5 59 0 6 1240 1053 150 0 0 chr5 85926983 85927163 -66610096 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1240 970 136 6 11 chr5 85927186 85927365 -66609894 + CT-rich Low_complexity Low_complexity 2 179 0 6 1240 615 184 90 14 chr5 85927397 85927568 -66609691 - Lx7 LINE L1 -1428 6268 6086 6 1240 881 95 0 14 chr5 85927797 85927936 -66609323 + L1Md_F2 LINE L1 6423 6559 -23 6 1240 183 42 0 0 chr5 85927936 85927960 -66609299 + (TAA)n Simple_repeat Simple_repeat 1 24 0 6 1240 240 146 0 0 chr5 85928074 85928122 -66609137 - L1_Mur3 LINE L1 -4112 1768 1721 6 1240 182 0 107 0 chr5 85928123 85928151 -66609108 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 6 1240 2162 167 73 8 chr5 85928155 85928915 -66608344 - L1_Mur3 LINE L1 -4149 1731 918 6 1240 324 161 0 0 chr5 85928942 85929023 -66608236 + T-rich Low_complexity Low_complexity 1 81 0 6 1240 2306 231 47 10 chr5 85929023 85929623 -66607636 - L1_Mur3 LINE L1 -6804 924 303 6 1240 360 0 0 0 chr5 85930025 85930065 -66607194 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1240 276 292 0 0 chr5 85930066 85930131 -66607128 - B3 SINE B2 -27 189 125 6 1240 22 0 0 0 chr5 85930336 85930358 -66606901 + AT_rich Low_complexity Low_complexity 1 22 0 6 1240 6496 113 41 9 chr5 85930538 85931627 -66605632 + Lx LINE L1 5528 6651 -3 6 1240 1779 36 9 0 chr5 85932199 85932419 -66604840 - L1Md_F3 LINE L1 -16 6568 6347 6 1240 304 294 60 60 chr5 85932934 85933068 -66604191 - MIRb SINE MIR -68 200 67 6 1240 735 102 0 30 chr5 85935813 85935944 -66601315 + (GAAAA)n Simple_repeat Simple_repeat 2 128 0 6 1240 630 252 160 0 chr5 85935986 85936192 -66601067 + Lx5 LINE L1 6812 7050 0 6 1240 370 264 49 113 chr5 85936197 85936483 -66600776 + L1VL1 LINE L1 6 392 -6030 6 1240 423 263 15 8 chr5 85936541 85936675 -66600584 + L1Md_F LINE L1 675 809 -5807 6 1240 24946 122 72 18 chr5 85936677 85941490 -66595769 + L1Md_F LINE L1 725 5797 -86 6 1240 6267 60 0 15 chr5 85941491 85943024 -66594235 + L1Md_T LINE L1 288 1894 -3992 6 1240 2285 104 91 18 chr5 85943024 85943407 -66593852 + IAPLTR2a LTR ERVK 1 411 0 6 1240 3063 42 10 33 chr5 85943478 85943877 -66593382 - RLTR10 LTR ERVK 0 390 1 6 1240 15134 35 5 30 chr5 85943879 85945874 -66591385 - RLTR10-int LTR ERVK -3 1984 41 6 1240 3000 52 10 33 chr5 85945884 85946283 -66590976 - RLTR10 LTR ERVK 0 390 1 6 1240 28369 44 0 3 chr5 85946283 85949997 -66587262 + L1Md_T LINE L1 1889 5589 -297 6 1240 8382 34 2 0 chr5 85949997 85950991 -66586268 + L1Md_T LINE L1 5590 6585 0 6 1240 5880 83 5 0 chr5 85951001 85951781 -66585478 + L1_Mus1 LINE L1 5783 6566 -1 6 1240 30 27 0 0 chr5 85952241 85952278 -66584981 + AT_rich Low_complexity Low_complexity 1 37 0 6 1240 3854 77 8 6 chr5 85952391 85952914 -66584345 - L1Md_F2 LINE L1 -11 6571 6048 6 1240 210 37 0 0 chr5 85953888 85953915 -66583344 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1240 7909 119 52 10 chr5 85956021 85957354 -66579905 - Lx3A LINE L1 -6 6975 5587 6 1240 2427 198 49 8 chr5 85957610 85958123 -66579136 - Lx2B LINE L1 -8 6992 6459 6 1240 347 283 136 21 chr5 85958802 85959007 -66578252 + L2c LINE L2 3176 3375 0 6 1240 2388 14 11 0 chr5 85959254 85959531 -66577728 - L1Md_A LINE L1 -1 6581 6302 6 1240 4349 192 85 7 chr5 85962279 85963277 -66573982 + Lx2B LINE L1 5919 6994 -6 6 1240 913 316 43 68 chr5 85963298 85963360 -66573899 - Lx8 LINE L1 -656 6817 6770 6 1240 2468 205 40 83 chr5 85963360 85964079 -66573180 - RMER6C LTR ERVK -2 688 1 6 1240 913 316 43 68 chr5 85964079 85964458 -66572801 - Lx8 LINE L1 -704 6769 6387 6 1240 272 344 136 53 chr5 85964468 85964674 -66572585 - B4A SINE B4 -64 228 6 6 1240 21 0 0 0 chr5 85964823 85964844 -66572415 + AT_rich Low_complexity Low_complexity 1 21 0 6 1240 188 382 11 0 chr5 85965015 85965104 -66572155 + MIR SINE MIR 131 220 -42 6 1240 287 291 28 55 chr5 85965509 85965618 -66571641 + U6 snRNA snRNA 1 106 -1 6 1240 369 0 0 0 chr5 85965808 85965849 -66571410 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1240 287 105 18 0 chr5 85965862 85965919 -66571340 + (TA)n Simple_repeat Simple_repeat 2 59 0 6 1240 644 288 128 67 chr5 85966663 85966976 -66570283 + Tigger6b DNA MER2_type 5 336 -1261 6 1240 680 279 78 37 chr5 85967601 85967895 -66569364 - MTEb LTR MaLR 0 379 74 6 1240 370 343 0 9 chr5 85968772 85968881 -66568378 + B4A SINE B4 1 108 -184 6 1240 419 258 90 15 chr5 85969116 85969250 -66568009 + B4A SINE B4 97 240 -52 6 1240 405 0 0 0 chr5 85969536 85969581 -66567678 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1240 36542 8 1 0 chr5 85969682 85975055 -66562204 + L1Md_A LINE L1 208 5586 -297 6 1240 9047 3 0 0 chr5 85975055 85976051 -66561208 + L1Md_A LINE L1 5587 6582 0 6 1240 23 0 0 0 chr5 85976070 85976093 -66561166 + AT_rich Low_complexity Low_complexity 1 23 0 6 1240 412 261 113 35 chr5 85976873 85977273 -66559986 + L1MC LINE L1 5174 5607 -726 6 1240 331 217 0 0 chr5 85977491 85977551 -66559708 + RMER15 LTR ERVL 1 60 -515 6 1240 315 281 12 12 chr5 85977722 85977805 -66559454 + GA-rich Low_complexity Low_complexity 1 83 0 6 1240 23 0 0 0 chr5 85978182 85978205 -66559054 + AT_rich Low_complexity Low_complexity 1 23 0 6 1240 803 81 169 46 chr5 85978207 85978337 -66558922 + B1_Mm SINE Alu 2 147 0 6 1240 498 17 0 0 chr5 85978806 85978865 -66558394 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1240 437 50 17 0 chr5 85978865 85978925 -66558334 + (TATG)n Simple_repeat Simple_repeat 2 62 0 6 1240 333 0 0 0 chr5 85979179 85979216 -66558043 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1240 459 0 0 0 chr5 85979216 85979266 -66557993 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1240 319 222 24 57 chr5 85979414 85979538 -66557721 + Lx6 LINE L1 7314 7433 -27 6 1240 441 184 20 30 chr5 85979685 85979780 -66557479 + B1_Mur3 SINE Alu 41 135 -14 6 1240 1134 23 0 0 chr5 85979780 85979913 -66557346 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 6 1240 561 303 92 33 chr5 85980190 85980800 -66556459 - L1ME1 LINE L1 -246 5933 5288 6 1240 22 0 0 0 chr5 85980888 85980910 -66556349 + AT_rich Low_complexity Low_complexity 1 22 0 6 19 11426 64 1 6 chr5 85982286 85984520 -66552739 - L1Md_F2 LINE L1 -13 6569 4345 6 1241 207 151 36 36 chr5 85985754 85985809 -66551450 + A-rich Low_complexity Low_complexity 3 57 0 6 1241 372 266 96 0 chr5 85986725 85986902 -66550357 - L1MCa LINE L1 -5233 1275 1082 6 1241 325 359 95 44 chr5 85986964 85987238 -66550021 - L1MCa LINE L1 -5979 529 242 6 1241 287 310 101 10 chr5 85987263 85987462 -66549797 - L1MCa LINE L1 -6291 217 1 6 1241 33882 26 13 20 chr5 85989253 85993724 -66543535 + L1Md_A LINE L1 438 4928 -955 6 1241 228 183 46 77 chr5 85993724 85993789 -66543470 - RMER20A LTR ERVK -268 248 186 6 1241 33882 26 13 20 chr5 85993789 85994441 -66542818 + L1Md_A LINE L1 4929 5585 -298 6 1241 8513 31 0 0 chr5 85994442 85995438 -66541821 + L1Md_A LINE L1 5587 6582 0 6 1241 255 103 0 0 chr5 85995482 85995521 -66541738 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1241 700 293 49 16 chr5 85995748 85996233 -66541026 + L1_Rod LINE L1 3968 4462 -1418 6 1241 765 204 7 0 chr5 85996320 85996467 -66540792 + B1_Mus1 SINE Alu 1 148 0 6 1241 29 0 0 0 chr5 85996476 85996505 -66540754 + AT_rich Low_complexity Low_complexity 1 29 0 6 1241 974 268 142 69 chr5 85996547 85997330 -66539929 + L1_Rod LINE L1 4467 5306 -541 6 1241 383 293 72 36 chr5 85997333 85997471 -66539788 + B1_Mur2 SINE Alu 1 143 -6 6 1241 634 254 104 28 chr5 85997477 85997759 -66539500 + L1_Rod LINE L1 5442 5728 -119 6 1241 210 37 0 0 chr5 86001535 86001562 -66535697 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1241 261 0 0 0 chr5 86001901 86001930 -66535329 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1241 3099 45 0 0 chr5 86002557 86002931 -66534328 - L1Md_T LINE L1 -442 6140 5767 3 1241 3671 44 15 0 chr5 86002931 86003388 -66533871 + L1Md_T LINE L1 6119 6582 0 3 1241 190 269 191 9 chr5 86003914 86004019 -66533240 - MIR SINE MIR -58 204 81 4 1241 268 302 94 16 chr5 86004330 86004458 -66532801 - B1F1 SINE Alu -9 140 3 5 1241 26 30 0 0 chr5 86004776 86004809 -66532450 + AT_rich Low_complexity Low_complexity 1 33 0 6 1241 1058 261 129 18 chr5 86005011 86005343 -66531916 - Lx6 LINE L1 -264 7196 6828 7 1241 387 216 42 25 chr5 86005391 86005510 -66531749 + Lx6 LINE L1 7184 7304 -156 8 1241 342 154 0 0 chr5 86005567 86005645 -66531614 + GA-rich Low_complexity Low_complexity 1 78 0 9 1241 346 53 35 0 chr5 86005704 86005761 -66531498 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1241 441 0 0 0 chr5 86005761 86005809 -66531450 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1241 624 295 20 0 chr5 86005809 86005958 -66531301 - B3A SINE B2 -41 157 6 1 1241 28 48 0 0 chr5 86006684 86006726 -66530533 + AT_rich Low_complexity Low_complexity 1 42 0 1 1241 215 222 0 0 chr5 86007019 86007064 -66530195 - L3 LINE CR1 -4288 201 157 1 1241 2050 212 78 15 chr5 86007284 86007743 -66529516 - Lx6 LINE L1 -751 6709 6222 7 1241 3276 139 68 84 chr5 86007744 86008111 -66529148 + L1Md_F LINE L1 542 951 -5665 1 1241 1834 71 4 8 chr5 86008111 86008368 -66528891 + L1Md_F2 LINE L1 6327 6582 0 1 1241 24186 114 10 7 chr5 86008368 86012357 -66524902 + L1Md_F LINE L1 952 4904 -979 1 1241 612 99 207 0 chr5 86012350 86012461 -66524798 + L1_Mus1 LINE L1 6418 6551 -16 1 1241 378 0 0 0 chr5 86012462 86012504 -66524755 + (TAA)n Simple_repeat Simple_repeat 3 44 0 1 1241 2133 223 24 12 chr5 86012542 86013308 -66523951 - Lx6 LINE L1 -1477 6219 5434 7 1241 1778 198 36 7 chr5 86013289 86013369 -66523890 - Lx6 LINE L1 -1171 4709 4626 7 1241 219 36 0 0 chr5 86013369 86013397 -66523862 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1241 1778 198 36 7 chr5 86013397 86013758 -66523501 - Lx6 LINE L1 -1255 4625 4256 7 1241 623 297 30 0 chr5 86014885 86015087 -66522172 - B3 SINE B2 -8 208 1 2 1241 500 341 47 12 chr5 86015103 86015272 -66521987 - B3A SINE B2 -6 192 18 2 1241 712 58 28 41 chr5 86015272 86015417 -66521842 + (TCTCTG)n Simple_repeat Simple_repeat 6 148 0 2 1241 23 33 0 0 chr5 86015759 86015789 -66521470 + AT_rich Low_complexity Low_complexity 1 30 0 2 1241 1099 79 0 0 chr5 86016900 86017040 -66520219 + B1_Mus2 SINE Alu 2 141 -6 2 1241 240 59 0 0 chr5 86017042 86017076 -66520183 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1241 2107 206 86 18 chr5 86017091 86017604 -66519655 + Lx5 LINE L1 6500 7047 -3 2 1241 511 300 42 87 chr5 86017913 86018223 -66519036 + MLT1G LTR MaLR 22 275 -316 2 1241 245 374 79 48 chr5 86018571 86018987 -66518272 - L2 LINE L2 -1890 1529 1101 2 1241 583 297 5 103 chr5 86019532 86019716 -66517543 + B4 SINE B4 2 167 -125 2 1241 522 0 0 0 chr5 86019716 86019774 -66517485 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1241 237 232 18 0 chr5 86019805 86019861 -66517398 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1241 789 51 8 25 chr5 86020867 86020988 -66516271 + (TTATG)n Simple_repeat Simple_repeat 5 123 0 3 1241 612 263 0 0 chr5 86020999 86021136 -66516123 - B1_Mus1 SINE Alu -11 137 1 3 1241 225 119 0 0 chr5 86021139 86021181 -66516078 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 3 1241 3775 99 24 4 chr5 86021916 86022466 -66514793 - L1_Mus4 LINE L1 -3 6633 6073 3 1241 2534 84 9 0 chr5 86022466 86022852 -66514407 + L1_Mus4 LINE L1 5540 5928 -708 3 1241 22 0 0 0 chr5 86023312 86023334 -66513925 + AT_rich Low_complexity Low_complexity 1 22 0 3 1241 23 54 0 0 chr5 86024882 86024919 -66512340 + AT_rich Low_complexity Low_complexity 1 37 0 3 1241 658 309 54 7 chr5 86025346 86025626 -66511633 - L1ME3A LINE L1 -53 6120 5828 3 1241 5159 111 8 0 chr5 86025627 86026383 -66510876 - Lx2 LINE L1 -2 6995 6234 3 1241 27 49 0 0 chr5 86027970 86028011 -66509248 + AT_rich Low_complexity Low_complexity 1 41 0 4 1241 502 272 121 27 chr5 86028550 86028810 -66508449 + MLT2B4 LTR ERVL 14 291 -229 4 1241 434 323 41 67 chr5 86028989 86029607 -66507652 + MLT1A-int LTR MaLR 22 769 -966 4 1241 246 360 105 33 chr5 86030170 86030380 -66506879 + MLT1A LTR MaLR 85 309 -65 4 1241 1034 88 0 20 chr5 86030579 86030730 -66506529 - B1_Mus1 SINE Alu 0 148 1 4 1241 242 56 0 27 chr5 86031291 86031328 -66505931 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1241 946 77 28 0 chr5 86031347 86031490 -66505769 + (CATATA)n Simple_repeat Simple_repeat 1 147 0 4 1241 228 333 0 15 chr5 86033492 86033559 -66503700 - MIRb SINE MIR -41 227 162 4 1241 549 343 71 73 chr5 86033863 86034259 -66503000 - MER47B DNA MER2_type -2 416 22 4 1241 357 24 0 0 chr5 86034275 86034317 -66502942 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1241 2968 29 0 0 chr5 86034825 86035171 -66502088 + ORR1A0 LTR MaLR 1 346 0 4 1241 367 223 20 69 chr5 86035481 86035582 -66501677 + MTEa LTR MaLR 284 379 0 5 1241 520 280 179 24 chr5 86036019 86036554 -66500705 - Zaphod DNA Tip100 -2882 1149 532 5 1241 1611 139 7 15 chr5 86036904 86037175 -66500084 + Lx LINE L1 6377 6645 -9 5 1241 529 318 0 50 chr5 86038759 86038938 -66498321 + B3A SINE B2 1 170 -28 5 1241 25 0 0 0 chr5 86039231 86039256 -66498003 + AT_rich Low_complexity Low_complexity 1 25 0 5 1241 936 262 19 15 chr5 86039263 86039523 -66497736 - Lx6 LINE L1 -26 7434 7174 5 1241 643 237 7 28 chr5 86039946 86040089 -66497170 + B1F SINE Alu 10 149 0 5 1241 3169 300 74 18 chr5 86040307 86041507 -66495752 + Lx8 LINE L1 6197 7463 -10 5 1241 5310 58 8 27 chr5 86042489 86043193 -66494066 - L1_Mus2 LINE L1 -2 6564 5874 5 1241 183 115 0 0 chr5 86043307 86043333 -66493926 + L2a LINE L2 3300 3325 -101 5 1241 238 273 12 38 chr5 86043719 86043799 -66493460 - L2a LINE L2 0 3426 3349 6 1241 1845 234 77 45 chr5 86044573 86045256 -66492003 + RMER13A LTR ERVK 1 748 -160 6 1241 264 73 0 68 chr5 86045350 86045409 -66491850 + (TTTG)n Simple_repeat Simple_repeat 1 55 0 6 1241 533 315 33 48 chr5 86045431 86045641 -66491618 - ID_B1 SINE B4 -16 208 2 6 1241 833 183 147 5 chr5 86046116 86046314 -66490945 + URR1A DNA MER1_type 1 226 0 6 1241 279 0 0 0 chr5 86046574 86046605 -66490654 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 1241 241 317 83 45 chr5 86047107 86047239 -66490020 - MER89 LTR ERV1 -40 519 383 6 1241 333 0 0 0 chr5 86047435 86047472 -66489787 + (TC)n Simple_repeat Simple_repeat 2 38 0 6 1241 204 40 0 0 chr5 86047472 86047496 -66489763 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1241 1901 134 15 39 chr5 86048228 86048561 -66488698 + Lx2A LINE L1 6682 7006 -2 6 1241 2491 34 0 0 chr5 86048728 86049024 -66488235 - L1Md_A LINE L1 0 6582 6287 7 1241 647 302 74 105 chr5 86051554 86051850 -66485409 + B4A SINE B4 6 292 0 7 1241 1065 221 173 3 chr5 86052006 86052301 -66484958 + Lx9 LINE L1 7120 7464 -180 7 1241 735 121 0 0 chr5 86052305 86052445 -66484814 + (TC)n Simple_repeat Simple_repeat 1 140 0 7 1241 459 228 0 0 chr5 86052472 86052595 -66484664 + (TG)n Simple_repeat Simple_repeat 2 124 0 7 1241 248 322 105 40 chr5 86053745 86053897 -66483362 + RSINE1 SINE B4 4 165 0 7 1241 29 47 0 0 chr5 86054025 86054068 -66483191 + AT_rich Low_complexity Low_complexity 1 43 0 7 1241 2451 94 46 3 chr5 86054068 86054441 -66482818 - MTB LTR MaLR -2 398 10 7 1241 459 0 0 0 chr5 86054441 86054492 -66482767 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1241 201 74 0 0 chr5 86054560 86054587 -66482672 + (TATG)n Simple_repeat Simple_repeat 3 29 0 7 1241 368 305 6 32 chr5 86054733 86054889 -66482370 + Lx9 LINE L1 5835 5986 -1658 8 1241 202 222 22 0 chr5 86055040 86055085 -66482174 + (ATGGTG)n Simple_repeat Simple_repeat 6 51 0 8 1241 348 103 0 0 chr5 86055111 86055169 -66482090 + (CAGA)n Simple_repeat Simple_repeat 3 60 0 8 1241 1743 315 93 28 chr5 86055184 86055967 -66481292 + Lx9 LINE L1 6359 7192 -452 8 1241 30 59 0 0 chr5 86056022 86056073 -66481186 + AT_rich Low_complexity Low_complexity 1 51 0 8 1241 216 0 0 0 chr5 86056436 86056460 -66480799 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 1241 607 208 6 12 chr5 86056685 86056846 -66480413 + GA-rich Low_complexity Low_complexity 3 162 0 8 1241 678 250 7 22 chr5 86056858 86056997 -66480262 + B1_Mur2 SINE Alu 2 138 -11 8 1241 5698 68 44 1 chr5 86057427 86058199 -66479060 + L1_Mus2 LINE L1 5761 6565 -1 8 1241 22 0 0 0 chr5 86058202 86058224 -66479035 + AT_rich Low_complexity Low_complexity 1 22 0 8 1241 441 0 0 0 chr5 86060080 86060129 -66477130 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 8 1241 541 306 43 14 chr5 86060768 86060977 -66476282 - B3 SINE B2 0 216 2 9 1241 1122 71 0 0 chr5 86061009 86061149 -66476110 + B1_Mus1 SINE Alu 3 142 -6 9 1241 8780 55 5 4 chr5 86061198 86062323 -66474936 + L1Md_F2 LINE L1 4461 5586 -297 9 1241 7928 48 2 2 chr5 86062323 86063303 -66473956 + L1Md_F2 LINE L1 5587 6566 -16 9 1241 24 0 0 0 chr5 86063304 86063328 -66473931 + AT_rich Low_complexity Low_complexity 1 24 0 9 1241 7768 77 2 0 chr5 86063401 86064677 -66472582 + L1_Mus1 LINE L1 5289 6567 0 9 1241 227 279 0 42 chr5 86065932 86066003 -66471256 + MER103 DNA DNA 62 129 -37 9 1241 183 382 81 0 chr5 86066498 86066621 -66470638 - L2b LINE L2 -147 3228 3096 9 1241 827 51 8 0 chr5 86067335 86067452 -66469807 + (TC)n Simple_repeat Simple_repeat 2 119 0 9 1241 213 154 0 0 chr5 86067467 86067506 -66469753 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1241 286 331 40 101 chr5 86068082 86068280 -66468979 - MLT1B LTR MaLR 0 390 205 9 1241 601 179 338 0 chr5 86069177 86069322 -66467937 + URR1A DNA MER1_type 2 195 -31 1 1241 3615 54 0 0 chr5 86069383 86069831 -66467428 + L1Md_T LINE L1 5139 5586 -297 1 1241 8367 32 0 0 chr5 86069831 86070837 -66466422 + L1Md_T LINE L1 5587 6582 0 1 1241 7926 51 2 2 chr5 86070881 86071865 -66465394 + L1Md_F2 LINE L1 5587 6570 -12 1 1241 532 287 28 7 chr5 86072360 86072504 -66464755 - Tigger12A DNA MER2_type -2 789 643 1 1241 425 380 60 0 chr5 86072500 86072734 -66464525 - Tigger12A DNA MER2_type -542 249 2 1 1241 448 314 136 84 chr5 86073963 86074450 -66462809 - MLT2B1 LTR ERVL -8 512 1 1 1241 1900 167 31 3 chr5 86074580 86074905 -66462354 + ORR1A1 LTR MaLR 5 338 -8 1 1241 414 0 0 0 chr5 86075660 86075706 -66461553 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1241 207 317 0 0 chr5 86076267 86076327 -66460932 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1241 612 288 16 28 chr5 86076328 86076510 -66460749 - B3A SINE B2 -17 181 2 1 1241 29 28 0 0 chr5 86076540 86076576 -66460683 + AT_rich Low_complexity Low_complexity 1 36 0 1 1241 3895 196 30 41 chr5 86076724 86077582 -66459677 - RMER13B LTR ERVK -59 849 1 1 1241 346 303 34 14 chr5 86077622 86077769 -66459490 + L1MB1 LINE L1 4761 4910 -1230 1 1241 400 266 116 23 chr5 86077914 86078287 -66458972 + L1MB1 LINE L1 5117 5531 -640 1 1241 241 303 75 8 chr5 86078478 86078611 -66458648 + L1MB1 LINE L1 5850 5991 -177 1 1241 636 200 0 0 chr5 86078625 86078760 -66458499 + (TG)n Simple_repeat Simple_repeat 2 136 0 1 1241 240 86 0 0 chr5 86079193 86079228 -66458031 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 1 1241 267 79 0 0 chr5 86080779 86080817 -66456442 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1241 182 317 98 0 chr5 86081061 86081143 -66456116 - L2c LINE L2 -55 3332 3243 1 1241 344 161 12 0 chr5 86082562 86082643 -66454616 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 1241 499 346 61 51 chr5 86082889 86083358 -66453901 - LTR33C LTR ERVL -162 501 1 1 1241 389 81 0 16 chr5 86083496 86083559 -66453700 + (TAA)n Simple_repeat Simple_repeat 2 63 0 1 1241 459 343 90 33 chr5 86084199 86084779 -66452480 - MERVL-int LTR ERVL -782 4703 4178 1 1241 289 306 48 62 chr5 86084810 86085019 -66452240 - MERVL-int LTR ERVL -1729 3938 3733 1 1241 402 21 0 0 chr5 86085298 86085345 -66451914 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1241 200 34 0 33 chr5 86085466 86085496 -66451763 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 1 1241 1547 288 9 7 chr5 86085510 86085947 -66451312 - Lx7 LINE L1 -390 7306 6869 1 1241 2742 60 8 8 chr5 86085974 86086345 -66450914 - L1Md_F2 LINE L1 0 6582 6212 1 1241 519 60 0 0 chr5 86087134 86087201 -66450058 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 1 1241 411 56 0 0 chr5 86087203 86087257 -66450002 + (TGAG)n Simple_repeat Simple_repeat 1 54 0 1 1241 245 349 115 12 chr5 86087360 86087604 -66449655 + L2 LINE L2 2161 2429 -990 1 1241 1311 235 186 46 chr5 86087604 86088082 -66449177 + RMER2 LTR ERV1 1 545 -22 1 1241 340 316 41 0 chr5 86088493 86088591 -66448668 - PB1D10 SINE Alu -14 103 2 1 1241 350 45 0 0 chr5 86088898 86088942 -66448317 - HAL1-3A_ME LINE L1 -840 2018 1975 1 1241 446 151 23 0 chr5 86088942 86089028 -66448231 + (TATG)n Simple_repeat Simple_repeat 3 90 0 1 1241 491 174 61 52 chr5 86089231 86089346 -66447913 + B1_Mus1 SINE Alu 33 148 0 1 1241 756 321 73 38 chr5 86089469 86089783 -66447476 - MER2 DNA MER2_type -3 342 18 1 1241 360 0 0 0 chr5 86091786 86091826 -66445433 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1241 270 0 0 0 chr5 86091826 86091855 -66445404 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1241 669 25 0 0 chr5 86091855 86091933 -66445326 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1241 201 74 0 0 chr5 86092029 86092056 -66445203 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1241 594 281 97 13 chr5 86092133 86092432 -66444827 - L1MB7 LINE L1 -48 6136 5813 1 1241 21 0 0 0 chr5 86093326 86093347 -66443912 + AT_rich Low_complexity Low_complexity 1 21 0 1 1241 544 273 147 5 chr5 86093433 86093617 -66443642 + B3 SINE B2 1 210 -6 1 1241 5253 149 22 5 chr5 86094453 86094741 -66442518 + L1_Mm LINE L1 4936 5234 -649 1 1241 591 53 0 0 chr5 86094741 86094816 -66442443 + (TA)n Simple_repeat Simple_repeat 1 75 0 1 1241 5253 149 22 5 chr5 86094816 86095416 -66441843 + L1_Mm LINE L1 5235 5839 -44 1 1241 4371 89 5 8 chr5 86095417 86096060 -66441199 - L1_Mm LINE L1 -3427 2456 1816 1 1241 1935 141 0 0 chr5 86096086 86096377 -66440882 + Lx2 LINE L1 6353 6643 -354 1 1241 1438 102 24 0 chr5 86096377 86096583 -66440676 + Lx2 LINE L1 6775 6985 -12 1 1241 434 294 96 25 chr5 86096680 86096879 -66440380 + MER33 DNA MER1_type 39 251 -73 1 1241 726 348 88 55 chr5 86096987 86097359 -66439900 - MER92B LTR ERV1 -47 589 208 1 1241 6203 28 1 3 chr5 86097359 86098085 -66439174 - L1Md_F2 LINE L1 -13 6569 5845 1 1241 726 348 88 55 chr5 86098085 86098272 -66438987 - MER92B LTR ERV1 -429 207 12 1 1241 437 240 108 77 chr5 86098879 86098928 -66438331 - MER89 LTR ERV1 0 559 516 1 1241 180 0 0 0 chr5 86098928 86098948 -66438311 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1241 437 240 108 77 chr5 86098948 86099092 -66438167 - MER89 LTR ERV1 -44 515 360 1 1241 1223 115 0 0 chr5 86099329 86099511 -66437748 + RMER4B LTR ERVK 1 182 -403 1 1241 984 164 0 0 chr5 86099510 86099662 -66437597 + RLTR25B LTR ERVK 77 228 -800 1 1241 524 161 125 67 chr5 86099647 86099767 -66437492 + RLTR25B LTR ERVK 638 764 -264 1 1241 219 114 0 0 chr5 86099843 86099878 -66437381 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1241 923 227 98 58 chr5 86100314 86100590 -66436669 + RLTR25B LTR ERVK 742 1028 0 1 1241 918 164 200 9 chr5 86100590 86100804 -66436455 + RMER4B LTR ERVK 323 577 -8 1 1241 256 341 94 43 chr5 86101046 86101184 -66436075 - MER110A LTR ERV1 -169 299 155 1 1241 639 0 0 0 chr5 86101723 86101794 -66435465 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 1 1241 221 218 18 18 chr5 86102940 86102996 -66434263 + GA-rich Low_complexity Low_complexity 5 60 0 1 1241 1127 311 98 42 chr5 86103071 86103866 -66433393 - MER54A LTR ERVL 0 901 4 1 1241 3049 113 37 2 chr5 86104636 86105095 -66432164 + L1_Mus4 LINE L1 6154 6628 -8 1 1241 1011 54 0 0 chr5 86105095 86105225 -66432034 + (GAGAA)n Simple_repeat Simple_repeat 4 133 0 1 1241 387 0 0 0 chr5 86107353 86107396 -66429863 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1241 282 125 0 0 chr5 86108798 86108846 -66428413 + (TTTTC)n Simple_repeat Simple_repeat 1 48 0 1 155 30749 31 7 6 chr5 86109057 86115221 -66422038 - L1Md_T LINE L1 -2 6580 411 1 1242 492 250 155 24 chr5 86115572 86115740 -66421519 - Lx8 LINE L1 -358 7115 6926 1 1242 894 286 71 34 chr5 86115796 86116147 -66421112 + MTEb LTR MaLR 6 369 -10 1 1242 211 250 0 48 chr5 86116490 86116553 -66420706 + G-rich Low_complexity Low_complexity 2 61 0 1 1242 273 57 0 0 chr5 86116735 86116770 -66420489 + (TAA)n Simple_repeat Simple_repeat 3 37 0 1 1242 429 76 0 0 chr5 86117475 86117541 -66419718 + (TTTTG)n Simple_repeat Simple_repeat 5 70 0 1 1242 505 116 18 42 chr5 86117542 86117668 -66419591 - B1_Mur4 SINE Alu 0 150 24 1 1242 23 0 0 0 chr5 86118983 86119006 -66418253 + AT_rich Low_complexity Low_complexity 1 23 0 1 1242 265 358 124 10 chr5 86119474 86119683 -66417576 - HERV16-int LTR ERVL -3415 1581 1349 1 1242 486 0 0 0 chr5 86119804 86119858 -66417401 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1242 522 0 0 0 chr5 86119858 86119915 -66417344 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1242 3151 278 102 38 chr5 86120279 86121754 -66415505 - Lx6 LINE L1 0 7460 5607 1 1242 304 282 0 0 chr5 86121734 86121805 -66415454 + Lx6 LINE L1 5534 5604 -276 1 1242 333 302 19 0 chr5 86121861 86121967 -66415292 + GA-rich Low_complexity Low_complexity 2 109 0 1 1242 465 19 0 0 chr5 86123591 86123645 -66413614 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1242 584 305 51 19 chr5 86124370 86124584 -66412675 - LTR53 LTR ERVL -109 410 190 1 1242 256 64 0 41 chr5 86124808 86124857 -66412402 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 1 1242 206 261 14 14 chr5 86125079 86125149 -66412110 + GA-rich Low_complexity Low_complexity 1 70 0 1 1242 356 362 80 74 chr5 86127088 86127440 -66409819 + ORR1E LTR MaLR 1 354 -5 1 1242 362 351 18 60 chr5 86127540 86127758 -66409501 - MLT1C LTR MaLR -3 464 256 1 1242 333 100 0 0 chr5 86127758 86127808 -66409451 + (TTGG)n Simple_repeat Simple_repeat 4 53 0 1 1242 862 141 0 123 chr5 86128021 86128191 -66409068 + B2_Mm2 SINE B2 5 153 -42 1 1242 303 28 0 0 chr5 86128191 86128227 -66409032 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1242 343 300 10 10 chr5 86128820 86128921 -66408338 + MamRep434 DNA TcMar 323 423 -3 1 1242 23 0 0 0 chr5 86129364 86129387 -66407872 + AT_rich Low_complexity Low_complexity 1 23 0 1 1242 5726 95 12 4 chr5 86129839 86130655 -66406604 - L1_Mus3 LINE L1 0 6638 5816 1 1242 393 245 45 26 chr5 86130797 86130952 -66406307 + L1MD LINE L1 4569 4726 -1420 1 1242 257 81 48 16 chr5 86131300 86131363 -66405896 + (CAA)n Simple_repeat Simple_repeat 2 66 0 1 1242 236 244 67 79 chr5 86131382 86131471 -66405788 - LTR84a LTR ERVL -81 676 589 1 1242 623 331 81 62 chr5 86131565 86131997 -66405262 - LTR84a LTR ERVL -312 445 6 1 1242 207 177 62 46 chr5 86132080 86132145 -66405114 + T-rich Low_complexity Low_complexity 2 67 0 1 1242 32 0 0 0 chr5 86132643 86132675 -66404584 + AT_rich Low_complexity Low_complexity 1 32 0 1 1242 203 0 37 0 chr5 86133061 86133088 -66404171 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1242 21 36 0 0 chr5 86134022 86134050 -66403209 + AT_rich Low_complexity Low_complexity 1 28 0 1 1242 441 290 40 0 chr5 86134391 86134567 -66402692 + L1_Rod LINE L1 5638 5820 -27 1 1242 447 68 0 0 chr5 86134602 86134661 -66402598 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1242 359 345 14 12 chr5 86135624 86135795 -66401464 - MIR SINE MIR -16 252 81 1 1242 225 0 0 0 chr5 86136871 86136896 -66400363 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1 1242 222 37 0 0 chr5 86137407 86137434 -66399825 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1 1242 188 262 24 0 chr5 86137445 86137487 -66399772 + L3 LINE CR1 2993 3035 -1454 1 1242 514 174 182 23 chr5 86137732 86137908 -66399351 - Lx5 LINE L1 -730 6320 6117 1 1242 2845 196 62 89 chr5 86137929 86138651 -66398608 + Lx5 LINE L1 6348 7050 0 1 1242 452 396 58 34 chr5 86140356 86140853 -66396406 + L2a LINE L2 2915 3423 -3 2 1242 378 0 0 0 chr5 86140928 86140970 -66396289 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1242 21032 215 35 27 chr5 86141294 86141793 -66395466 + L1_Mur2 LINE L1 806 1295 -5689 2 1242 4887 28 5 7 chr5 86141793 86142376 -66394883 + L1Md_T LINE L1 6001 6582 0 2 1242 21032 169 47 19 chr5 86142376 86143650 -66393609 + L1_Mur2 LINE L1 1296 2647 -3230 2 1242 450 0 0 0 chr5 86143650 86143700 -66393559 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 1242 21032 169 47 19 chr5 86143700 86146737 -66390522 + L1_Mur2 LINE L1 2648 5729 -148 2 1242 1874 50 0 4 chr5 86146737 86146977 -66390282 + L1Md_A LINE L1 6344 6582 0 2 1242 21032 169 47 19 chr5 86146977 86146988 -66390271 + L1_Mur2 LINE L1 5730 5741 -136 2 1242 5885 201 25 44 chr5 86147060 86148275 -66388984 + Lx5 LINE L1 5720 6911 -139 2 1242 251 0 59 0 chr5 86148335 86148369 -66388890 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 2 1242 675 278 100 44 chr5 86148393 86148871 -66388388 + L1MB2 LINE L1 5464 5968 -203 2 1242 764 260 86 30 chr5 86150448 86150682 -66386577 + ORR1E LTR MaLR 4 250 -109 2 1242 523 326 119 10 chr5 86151309 86151619 -66385640 + MLT1A0 LTR MaLR 10 353 -12 2 1242 234 246 98 0 chr5 86152046 86152107 -66385152 - MER45A DNA Tip100 0 178 112 2 1242 228 175 0 34 chr5 86152111 86152170 -66385089 - L1M5 LINE L1 -837 5607 5551 2 1242 4427 88 19 15 chr5 86153288 86153936 -66383323 - L1_Mus4 LINE L1 -4 6632 5983 2 1242 1179 107 0 0 chr5 86153938 86154106 -66383153 + L1_Mus4 LINE L1 5791 5958 -678 2 1242 282 273 23 0 chr5 86154244 86154270 -66382989 + ORR1E-int LTR MaLR 620 648 -861 2 1242 1082 82 0 0 chr5 86154270 86154416 -66382843 + B1_Mus2 SINE Alu 2 147 0 2 1242 28 29 0 0 chr5 86154525 86154560 -66382699 + AT_rich Low_complexity Low_complexity 1 35 0 2 1242 2692 254 82 31 chr5 86154567 86155377 -66381882 - Lx7 LINE L1 -18 7678 6828 2 1242 22 0 0 0 chr5 86155747 86155769 -66381490 + AT_rich Low_complexity Low_complexity 1 22 0 2 1242 222 366 10 19 chr5 86155897 86155916 -66381343 - B3 SINE B2 -110 106 5 2 1242 467 207 0 24 chr5 86155916 86156000 -66381259 - RSINE1 SINE B4 -78 87 6 2 1242 32 0 0 0 chr5 86156042 86156074 -66381185 + AT_rich Low_complexity Low_complexity 1 32 0 2 1242 308 211 0 27 chr5 86156173 86156246 -66381013 - Lx6 LINE L1 -6 7454 7384 2 1242 277 114 0 0 chr5 86156246 86156290 -66380969 + L1_Mur3 LINE L1 3072 3115 -2765 2 1242 404 337 100 64 chr5 86156323 86156713 -66380546 + RLTR11A2 LTR ERVK 99 502 -25 2 1242 1620 154 11 9 chr5 86156790 86157137 -66380122 + L1_Mur3 LINE L1 3116 3463 -2417 2 1242 639 333 61 45 chr5 86157431 86157695 -66379564 + MLT1A0 LTR MaLR 86 353 -12 2 1242 543 31 0 0 chr5 86157823 86157888 -66379371 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1242 411 21 0 0 chr5 86157888 86157935 -66379324 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1242 186 143 0 0 chr5 86157953 86157988 -66379271 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1242 409 31 45 15 chr5 86159517 86159583 -66377676 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 2 1242 247 296 143 71 chr5 86159915 86160097 -66377162 - MLT1H LTR MaLR -258 291 97 2 1242 269 319 54 11 chr5 86160194 86160286 -66376973 + RSINE1 SINE B4 2 97 -68 2 1242 481 314 42 80 chr5 86160866 86161105 -66376154 - MLT1A LTR MaLR 0 374 145 2 1242 23 54 0 0 chr5 86161846 86161883 -66375376 + AT_rich Low_complexity Low_complexity 1 37 0 2 1242 404 292 87 33 chr5 86162199 86162383 -66374876 - MLT1A LTR MaLR -4 370 177 2 1242 21 36 0 0 chr5 86162608 86162636 -66374623 + AT_rich Low_complexity Low_complexity 1 28 0 2 1242 27 0 0 0 chr5 86162657 86162684 -66374575 + AT_rich Low_complexity Low_complexity 1 27 0 2 1242 527 149 8 0 chr5 86162804 86162925 -66374334 + CT-rich Low_complexity Low_complexity 1 122 0 2 1242 393 22 0 0 chr5 86163164 86163210 -66374049 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 2 1242 252 0 0 0 chr5 86163218 86163246 -66374013 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2 1242 33 56 0 0 chr5 86163520 86163574 -66373685 + AT_rich Low_complexity Low_complexity 1 54 0 2 1242 575 108 0 11 chr5 86163629 86163723 -66373536 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 1242 249 164 36 0 chr5 86163746 86163801 -66373458 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 2 1242 252 299 17 93 chr5 86163815 86163933 -66373326 - PB1D7 SINE Alu -2 118 10 2 1242 2870 94 10 0 chr5 86164047 86164450 -66372809 - MTB_Mm LTR MaLR 0 407 1 2 1242 180 0 0 0 chr5 86164645 86164665 -66372594 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2 1242 323 247 22 0 chr5 86165902 86165991 -66371268 + RLTR31_Mur LTR ERVK 1 91 -462 2 1242 240 336 0 57 chr5 86165991 86166114 -66371145 + Lx7 LINE L1 6581 6696 -1000 2 1242 989 100 33 16 chr5 86166114 86166284 -66370975 + RLTR9E LTR ERVK 1 169 -251 2 1242 2879 54 0 0 chr5 86166284 86166636 -66370623 - L1Md_F2 LINE L1 -243 5640 5289 2 1242 6876 54 7 3 chr5 86166636 86167512 -66369747 + L1Md_F2 LINE L1 5704 6582 0 2 1242 1819 82 29 32 chr5 86167545 86167824 -66369435 + RLTR9E LTR ERVK 132 409 0 2 1242 1771 282 57 22 chr5 86167824 86168497 -66368762 + Lx6 LINE L1 6458 7460 0 2 1242 233 265 103 0 chr5 86168968 86169036 -66368223 - MIRb SINE MIR -9 259 185 2 1242 284 366 52 42 chr5 86169542 86169733 -66367526 - MER58B DNA MER1_type -10 331 139 2 1242 22 0 0 0 chr5 86170497 86170519 -66366740 + AT_rich Low_complexity Low_complexity 1 22 0 2 1242 24 0 0 0 chr5 86170544 86170568 -66366691 + AT_rich Low_complexity Low_complexity 1 24 0 2 1242 1357 0 34 0 chr5 86170737 86171154 -66366105 + (TAGA)n Simple_repeat Simple_repeat 1 431 0 2 1242 1375 0 38 0 chr5 86171179 86171529 -66365730 + (TAGA)n Simple_repeat Simple_repeat 1 363 0 2 1242 255 191 0 0 chr5 86173789 86173836 -66363423 - MER4B-int LTR ERV1 -5567 1191 1145 2 1242 204 40 0 0 chr5 86175461 86175486 -66361773 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 1242 27 0 0 0 chr5 86175534 86175561 -66361698 + AT_rich Low_complexity Low_complexity 1 27 0 2 1242 21 57 0 0 chr5 86175620 86175655 -66361604 + AT_rich Low_complexity Low_complexity 1 35 0 2 1242 242 250 105 111 chr5 86175688 86175850 -66361409 + RMER15 LTR ERVL 1 161 -414 2 1242 285 349 25 84 chr5 86175868 86176071 -66361188 + RMER15 LTR ERVL 299 489 -86 2 1242 444 250 46 23 chr5 86176558 86176689 -66360570 - MER5A1 DNA MER1_type -24 142 9 2 1242 651 193 0 8 chr5 86177352 86177472 -66359787 + B1_Mur1 SINE Alu 11 129 -20 2 1242 429 189 32 8 chr5 86177473 86177596 -66359663 + GA-rich Low_complexity Low_complexity 3 128 0 2 1242 477 267 317 10 chr5 86177853 86177996 -66359263 - B4 SINE B4 -3 289 122 2 1242 360 0 0 0 chr5 86177996 86178036 -66359223 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1242 477 267 317 10 chr5 86178036 86178100 -66359159 - B4 SINE B4 -171 121 20 2 1242 284 317 105 18 chr5 86178130 86178358 -66358901 - L1MA5 LINE L1 -53 6247 6000 2 1242 1386 296 66 11 chr5 86179162 86179616 -66357643 - RMER5 LTR ERV1 -3 531 53 2 1242 290 335 115 31 chr5 86179887 86180194 -66357065 + L2c LINE L2 3037 3342 -33 2 1242 372 236 82 0 chr5 86180418 86180528 -66356731 - Lx7 LINE L1 0 7696 7578 2 1242 363 96 0 0 chr5 86180528 86180580 -66356679 + (TC)n Simple_repeat Simple_repeat 1 52 0 2 1242 745 237 163 12 chr5 86180626 86180878 -66356381 + Lx7 LINE L1 7049 7338 -358 2 1242 247 300 88 0 chr5 86180895 86180975 -66356284 - MER45R DNA Tip100 -1494 87 1 2 1242 797 217 0 26 chr5 86181428 86181584 -66355675 + B3 SINE B2 1 152 -64 2 1242 602 239 56 47 chr5 86182199 86182414 -66354845 + MER20 DNA MER1_type 1 217 -2 2 1242 250 317 19 56 chr5 86182442 86182549 -66354710 + MIRc SINE MIR 97 199 -69 2 1242 208 402 19 0 chr5 86183790 86183897 -66353362 + MIRb SINE MIR 94 202 -66 2 1242 430 226 37 28 chr5 86184325 86184434 -66352825 - PB1D10 SINE Alu -7 110 1 2 1242 319 321 0 12 chr5 86184643 86184728 -66352531 - PB1D10 SINE Alu -28 89 6 2 1242 1664 31 0 0 chr5 86187775 86187967 -66349292 + B2_Mm1a SINE B2 2 193 0 2 1242 246 216 108 33 chr5 86188938 86189058 -66348201 + L1M2 LINE L1 1459 1587 -5262 2 1242 348 0 58 0 chr5 86189322 86189374 -66347885 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1242 1171 268 131 13 chr5 86189812 86190187 -66347072 - MTD LTR MaLR 0 419 1 2 1242 252 204 19 0 chr5 86191993 86192047 -66345212 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 2 1242 723 124 0 0 chr5 86192048 86192161 -66345098 + (TTTC)n Simple_repeat Simple_repeat 4 116 0 2 1242 510 91 0 0 chr5 86192384 86192461 -66344798 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 1242 3206 179 93 12 chr5 86193584 86194250 -66343009 - RMER6D LTR ERVK 0 720 1 2 1242 22 35 0 0 chr5 86194821 86194850 -66342409 + AT_rich Low_complexity Low_complexity 1 29 0 2 1242 552 233 32 6 chr5 86194861 86195032 -66342227 - L1MA5 LINE L1 -16 6287 6113 2 1242 1090 206 5 9 chr5 86195311 86195531 -66341728 + URR1A DNA MER1_type 5 223 -3 2 1242 744 292 56 9 chr5 86195577 86195808 -66341451 + Lx8 LINE L1 6723 6964 -509 2 1242 268 326 85 23 chr5 86195810 86195986 -66341273 + Lx8 LINE L1 7221 7407 -66 2 1242 384 22 0 0 chr5 86196034 86196079 -66341180 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1242 31 76 0 0 chr5 86196174 86196240 -66341019 + AT_rich Low_complexity Low_complexity 1 66 0 2 1242 624 259 179 16 chr5 86196323 86196574 -66340685 + B4A SINE B4 1 292 0 2 1242 382 329 0 7 chr5 86196574 86196649 -66340610 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1242 240 35 0 0 chr5 86196649 86196678 -66340581 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 1242 382 329 0 7 chr5 86196678 86196743 -66340516 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1242 287 307 75 65 chr5 86198085 86198339 -66338920 + MLT2B3 LTR ERVL 228 509 -45 2 1242 948 157 0 0 chr5 86198506 86198672 -66338587 + GA-rich Low_complexity Low_complexity 3 168 0 2 1242 342 0 0 0 chr5 86199880 86199918 -66337341 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1242 531 0 0 0 chr5 86200298 86200357 -66336902 + (TC)n Simple_repeat Simple_repeat 1 59 0 3 1242 576 263 70 6 chr5 86201317 86201474 -66335785 + ORR1D2 LTR MaLR 1 167 -203 3 1242 551 53 13 0 chr5 86201536 86201611 -66335648 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1242 477 0 0 0 chr5 86203699 86203752 -66333507 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1242 880 201 251 28 chr5 86203913 86204164 -66333095 + ORR1C2 LTR MaLR 1 307 -77 3 1242 217 382 11 22 chr5 86204171 86204262 -66332997 + L2c LINE L2 3278 3367 -20 3 1242 243 0 0 0 chr5 86204604 86204631 -66332628 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 3 1242 748 75 15 22 chr5 86204935 86205072 -66332187 + (TAGA)n Simple_repeat Simple_repeat 3 138 0 3 1242 31 58 0 0 chr5 86205100 86205152 -66332107 + AT_rich Low_complexity Low_complexity 1 52 0 3 1242 642 49 0 0 chr5 86205362 86205444 -66331815 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1242 360 0 0 0 chr5 86205444 86205484 -66331775 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1242 24 53 0 0 chr5 86205667 86205705 -66331554 + AT_rich Low_complexity Low_complexity 1 38 0 3 1242 643 219 207 0 chr5 86205861 86206030 -66331229 + B3 SINE B2 1 204 -12 3 1242 27 0 0 0 chr5 86206030 86206057 -66331202 + AT_rich Low_complexity Low_complexity 1 27 0 3 1242 4139 43 8 0 chr5 86206330 86206838 -66330421 + L1Md_F2 LINE L1 6070 6581 -1 3 1242 1620 244 87 37 chr5 86207201 86207395 -66329864 + RMER19C LTR ERVK 107 333 -278 3 1242 315 65 0 0 chr5 86207395 86207441 -66329818 + (GTCTG)n Simple_repeat Simple_repeat 3 48 0 3 1242 1620 244 87 37 chr5 86207441 86207727 -66329532 + RMER19C LTR ERVK 334 610 -1 3 1242 748 258 73 0 chr5 86207824 86208002 -66329257 - B3 SINE B2 -20 196 6 3 1242 23 33 0 0 chr5 86208284 86208314 -66328945 + AT_rich Low_complexity Low_complexity 1 30 0 3 1242 188 280 95 21 chr5 86209405 86209500 -66327759 - MIRc SINE MIR -62 206 105 3 1242 736 209 90 0 chr5 86210684 86210861 -66326398 - Lx9 LINE L1 -137 7507 7315 3 1242 341 43 21 0 chr5 86211837 86211884 -66325375 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1242 7490 79 11 1 chr5 86212001 86213397 -66323862 - L1_Mus1 LINE L1 -1 6566 5154 3 1242 24 53 0 0 chr5 86213933 86213971 -66323288 + AT_rich Low_complexity Low_complexity 1 38 0 3 1242 586 238 25 0 chr5 86213990 86214112 -66323147 - RSINE1 SINE B4 -39 126 2 3 1242 445 16 32 0 chr5 86215885 86215947 -66321312 + (GTTTG)n Simple_repeat Simple_repeat 2 65 0 3 1242 1180 131 16 76 chr5 86216160 86216409 -66320850 + RMER10B LTR ERVL 7 240 -158 3 1242 600 14 0 0 chr5 86217904 86217973 -66319286 + (GGA)n Simple_repeat Simple_repeat 3 71 0 3 1242 428 256 103 22 chr5 86218082 86218218 -66319041 + L1MC LINE L1 4834 4980 -1166 3 1242 1062 82 0 7 chr5 86218219 86218366 -66318893 + B2_Mm2 SINE B2 2 147 -48 3 1242 224 268 55 27 chr5 86218353 86218426 -66318833 + RSINE1 SINE B4 12 86 -79 3 1242 393 109 176 29 chr5 86218389 86218503 -66318756 + B2_Mm2 SINE B2 49 193 0 3 1242 246 256 67 44 chr5 86218505 86218595 -66318664 - RLTR24 LTR ERV1 -409 120 29 3 1242 378 306 98 0 chr5 86218602 86218785 -66318474 + L1MC1 LINE L1 6113 6313 -20 3 1242 23 33 0 0 chr5 86218815 86218845 -66318414 + AT_rich Low_complexity Low_complexity 1 30 0 3 1242 456 255 16 147 chr5 86219094 86219278 -66317981 + MTEa LTR MaLR 208 367 -12 3 1242 3422 302 122 43 chr5 86219310 86220741 -66316518 + MTEa-int LTR MaLR 11 1554 -26 3 1242 459 272 74 92 chr5 86220719 86221027 -66316232 + ORR1E LTR MaLR 42 371 -8 3 1242 3750 72 8 2 chr5 86221644 86222131 -66315128 + L1_Mus2 LINE L1 6077 6566 0 3 1242 854 259 9 9 chr5 86222975 86223201 -66314058 + Lx5 LINE L1 6810 7035 -15 3 1242 207 69 0 0 chr5 86223202 86223231 -66314028 + (TTAA)n Simple_repeat Simple_repeat 2 30 0 3 1242 186 192 0 0 chr5 86224149 86224201 -66313058 + A-rich Low_complexity Low_complexity 2 53 0 3 1242 1221 294 28 33 chr5 86225641 86226000 -66311259 - ORR1E LTR MaLR -2 357 1 3 1242 268 312 17 92 chr5 86226000 86226084 -66311175 - MER31B LTR ERV1 -348 118 44 3 1242 806 161 0 75 chr5 86227212 86227373 -66309886 + B1_Mur4 SINE Alu 2 150 0 3 1242 696 12 0 0 chr5 86227377 86227458 -66309801 + (GGA)n Simple_repeat Simple_repeat 3 83 0 3 1242 21 0 0 0 chr5 86227753 86227774 -66309485 + AT_rich Low_complexity Low_complexity 1 21 0 3 1242 303 333 107 48 chr5 86227802 86228092 -66309167 - L1M5 LINE L1 -2212 3934 3628 3 1242 1143 136 97 113 chr5 86229643 86229891 -66307368 + ORR1A3 LTR MaLR 99 394 0 3 1242 189 171 0 0 chr5 86230069 86230104 -66307155 + GA-rich Low_complexity Low_complexity 2 36 0 3 1242 41 0 0 0 chr5 86230242 86230283 -66306976 + AT_rich Low_complexity Low_complexity 1 41 0 3 1242 468 0 0 0 chr5 86230456 86230508 -66306751 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1242 1242 48 0 0 chr5 86230558 86230704 -66306555 + B1_Mus1 SINE Alu 2 147 -1 3 1242 628 302 37 14 chr5 86230807 86231025 -66306234 + ID_B1 SINE B4 2 224 0 3 1242 388 361 12 25 chr5 86231140 86231302 -66305957 + B4A SINE B4 133 292 0 3 1242 195 42 0 0 chr5 86231306 86231330 -66305929 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1242 371 271 45 36 chr5 86231842 86231953 -66305306 + PB1D7 SINE Alu 7 118 -2 3 1242 180 317 27 63 chr5 86232297 86232408 -66304851 - L3 LINE CR1 -910 3579 3473 3 1242 374 323 142 92 chr5 86232917 86233414 -66303845 + MLT1F2 LTR MaLR 14 643 -37 3 1242 1043 187 0 27 chr5 86235221 86235408 -66301851 + B3 SINE B2 1 182 -34 3 1242 375 208 60 11 chr5 86235641 86235743 -66301516 - PB1D7 SINE Alu -6 114 7 3 1242 256 200 0 0 chr5 86236183 86236233 -66301026 - L4 LINE RTE -1 2028 1979 3 1242 440 205 33 43 chr5 86236664 86236756 -66300503 - RSINE1 SINE B4 -66 99 9 3 1242 250 234 0 14 chr5 86237173 86237238 -66300021 - L2a LINE L2 -7 3419 3319 3 1242 215 125 0 24 chr5 86237968 86238009 -66299250 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 3 1242 2544 189 136 23 chr5 86238052 86238566 -66298693 + RMER19C LTR ERVK 1 572 -39 3 1242 2551 63 6 0 chr5 86238566 86238900 -66298359 + L1Md_F2 LINE L1 6244 6579 -3 3 1242 232 275 58 104 chr5 86239025 86239049 -66298210 + MT2A LTR ERVL 3 30 -503 3 1242 3805 109 28 5 chr5 86239049 86239613 -66297646 + Lx2 LINE L1 6421 6997 0 3 1242 232 275 58 104 chr5 86239613 86239742 -66297517 + MT2A LTR ERVL 31 148 -385 3 1242 362 306 96 15 chr5 86239626 86239763 -66297496 + MTE2b LTR MaLR 32 213 -206 3 1242 576 163 10 0 chr5 86239845 86239943 -66297316 + MTE2b LTR MaLR 279 377 -2 3 1242 303 157 0 0 chr5 86239947 86239998 -66297261 + PB1D10 SINE Alu 66 116 -1 3 1242 23 0 0 0 chr5 86241010 86241033 -66296226 + AT_rich Low_complexity Low_complexity 1 23 0 3 1242 1965 230 93 26 chr5 86241048 86241646 -66295613 - L1_Rod LINE L1 -23 5824 5195 3 1242 291 28 0 0 chr5 86241646 86241682 -66295577 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1242 1965 230 93 26 chr5 86241682 86241711 -66295548 - L1_Rod LINE L1 -653 5194 5158 3 1242 608 13 26 0 chr5 86241711 86241787 -66295472 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 3 1242 1965 230 93 26 chr5 86241787 86241975 -66295284 - L1_Rod LINE L1 -690 5157 4955 3 1242 7280 60 14 10 chr5 86242257 86242439 -66294820 - L1_Mus1 LINE L1 -1 6653 6386 3 1242 2367 69 92 0 chr5 86242439 86242756 -66294503 + ORR1A1 LTR MaLR 1 346 0 3 1242 7280 61 14 7 chr5 86242756 86243596 -66293663 - L1_Mus1 LINE L1 -182 6385 5546 3 1242 1877 285 81 30 chr5 86243643 86243676 -66293583 + Lx9 LINE L1 6312 6341 -1303 3 1242 614 75 19 19 chr5 86243676 86243784 -66293475 + (TAGA)n Simple_repeat Simple_repeat 3 110 0 3 1242 1877 285 81 30 chr5 86243784 86244550 -66292709 + Lx9 LINE L1 6342 7152 -492 3 1242 495 290 34 45 chr5 86244553 86244752 -66292507 - RLTR18 LTR ERVK -3 613 305 3 1242 1160 54 0 26 chr5 86244752 86244903 -66292356 + B1_Mus2 SINE Alu 1 147 0 3 1242 396 312 83 93 chr5 86244903 86245076 -66292183 - RLTR18 LTR ERVK -208 304 132 3 155 527 299 82 33 chr5 86245226 86245409 -66291850 - RLTR18B LTR ERVK -311 201 10 3 1243 551 248 109 68 chr5 86245471 86245865 -66291394 + Lx9 LINE L1 7235 7644 0 3 1243 1115 89 0 0 chr5 86247152 86247298 -66289961 + B1_Mm SINE Alu 2 147 0 3 1243 269 321 0 12 chr5 86248920 86249002 -66288257 - B4 SINE B4 -205 87 7 3 1243 305 331 139 30 chr5 86249299 86249601 -66287658 + L2a LINE L2 1959 2293 -1126 3 1243 1864 178 32 11 chr5 86249604 86249951 -66287308 + ORR1B1 LTR MaLR 41 394 0 3 1243 1208 271 29 6 chr5 86250102 86250418 -66286841 + Lx6 LINE L1 7112 7434 -26 3 1243 195 310 33 33 chr5 86250590 86250650 -66286609 + L2a LINE L2 3321 3380 -46 3 1243 1604 32 5 0 chr5 86250669 86250859 -66286400 + B2_Mm1a SINE B2 1 191 -2 3 1243 186 269 39 0 chr5 86251015 86251067 -66286192 - MIRc SINE MIR -111 157 104 3 1243 36882 5 1 0 chr5 86251701 86257071 -66280188 + L1Md_A LINE L1 214 5586 -297 3 1243 8986 6 0 0 chr5 86257071 86258067 -66279192 + L1Md_A LINE L1 5587 6582 0 3 1243 923 147 31 13 chr5 86258653 86258812 -66278447 + U1 snRNA snRNA 3 164 -1 3 1243 1132 143 113 0 chr5 86259951 86260154 -66277105 - URR1A DNA MER1_type 0 226 1 3 1243 297 0 0 0 chr5 86261619 86261652 -66275607 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1243 21 0 0 0 chr5 86263150 86263171 -66274088 + AT_rich Low_complexity Low_complexity 1 21 0 3 1243 2326 87 27 0 chr5 86264313 86264645 -66272614 - L1_Mus4 LINE L1 -325 6311 5971 3 1243 1948 117 0 10 chr5 86264645 86264940 -66272319 + L1_Mus4 LINE L1 6338 6629 -7 3 1243 24 0 0 0 chr5 86264940 86264964 -66272295 + AT_rich Low_complexity Low_complexity 1 24 0 3 1243 245 311 11 53 chr5 86265168 86265263 -66271996 + Tigger5 DNA MER2_type 5 95 -2311 3 1243 863 45 162 15 chr5 86265256 86265392 -66271867 - B2_Mm2 SINE B2 -10 185 30 3 1243 261 0 0 0 chr5 86265397 86265426 -66271833 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1243 393 363 6 82 chr5 86265430 86265525 -66271734 + Tigger5 DNA MER2_type 85 168 -2238 3 1243 3146 63 32 2 chr5 86265525 86265936 -66271323 - L1_Mus2 LINE L1 0 6566 6144 3 1243 393 363 6 82 chr5 86265936 86266011 -66271248 + Tigger5 DNA MER2_type 169 242 -2164 3 1243 285 305 37 19 chr5 86266007 86266114 -66271145 + Tigger5 DNA MER2_type 2291 2399 -7 3 1243 422 295 21 0 chr5 86266117 86266212 -66271047 + B3A SINE B2 4 100 -98 3 1243 1673 59 9 0 chr5 86266929 86267148 -66270111 - L1Md_A LINE L1 0 6582 6362 4 1243 1918 49 8 0 chr5 86267148 86267393 -66269866 + L1_Mm LINE L1 5493 5739 -144 4 1243 2135 312 60 27 chr5 86267908 86268833 -66268426 - Lx8 LINE L1 -129 7344 6390 4 1243 343 341 106 28 chr5 86268973 86269257 -66268002 + HAL1 LINE L1 1852 2157 -350 4 1243 26 0 0 0 chr5 86269754 86269780 -66267479 + AT_rich Low_complexity Low_complexity 1 26 0 4 1243 368 272 60 11 chr5 86269919 86270101 -66267158 - MER53 DNA hAT 0 193 3 4 1243 3127 234 57 14 chr5 86270270 86271554 -66265705 + RMER1B Other Other 45 921 -145 4 1243 1370 60 27 6 chr5 86271697 86271880 -66265379 - B2_Mm2 SINE B2 -8 187 1 4 1243 637 210 83 142 chr5 86272045 86272405 -66264854 + Lx7 LINE L1 7358 7696 0 4 1243 180 0 0 0 chr5 86272505 86272525 -66264734 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 4 1243 422 277 63 42 chr5 86273044 86273187 -66264072 - ID_B1 SINE B4 0 224 79 4 1243 810 301 32 7 chr5 86273273 86273557 -66263702 + B4A SINE B4 2 292 0 4 1243 582 222 55 8 chr5 86273740 86273753 -66263506 - B1_Mur2 SINE Alu -16 133 120 4 1243 537 16 0 0 chr5 86273753 86273815 -66263444 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1243 582 222 55 8 chr5 86273815 86273928 -66263331 - B1_Mur2 SINE Alu -30 119 1 4 1243 288 91 0 0 chr5 86273937 86273981 -66263278 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1243 374 295 85 24 chr5 86274134 86274346 -66262913 + ORR1E LTR MaLR 4 228 -131 4 1243 189 94 0 0 chr5 86274647 86274679 -66262580 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1243 360 43 0 0 chr5 86275119 86275165 -66262094 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1243 21 0 0 0 chr5 86275218 86275239 -66262020 + AT_rich Low_complexity Low_complexity 1 21 0 4 1243 369 0 0 0 chr5 86275241 86275282 -66261977 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1243 279 0 0 0 chr5 86275282 86275312 -66261947 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1243 1143 65 0 0 chr5 86276159 86276298 -66260961 + B1_Mus1 SINE Alu 1 139 -9 4 1243 234 0 0 0 chr5 86276298 86276324 -66260935 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1243 1382 215 86 113 chr5 86276747 86277377 -66259882 - Lx9 LINE L1 -4 7640 6897 4 1243 1978 183 259 14 chr5 86277408 86277935 -66259324 + RLTR25A LTR ERVK 446 1028 0 4 1243 1256 87 60 0 chr5 86277945 86278128 -66259131 + MTB LTR MaLR 1 194 -206 4 1243 5808 38 16 0 chr5 86278128 86278859 -66258400 - L1_Mm LINE L1 -1728 4155 3413 4 1243 6913 42 8 6 chr5 86278859 86279735 -66257524 + L1Md_F3 LINE L1 5707 6584 0 4 1243 1632 46 5 9 chr5 86279740 86279960 -66257299 + MTB LTR MaLR 182 400 0 4 1243 2485 250 56 32 chr5 86279961 86280803 -66256456 - L1_Rod LINE L1 -1511 4336 3475 4 1243 454 345 57 68 chr5 86280914 86281299 -66255960 - MLT2B4 LTR ERVL -175 381 1 4 1243 23 33 0 0 chr5 86281501 86281531 -66255728 + AT_rich Low_complexity Low_complexity 1 30 0 4 1243 614 295 168 30 chr5 86283678 86283975 -66253284 + MLT2D LTR ERVL 1 338 -76 4 1243 1183 84 0 23 chr5 86283976 86284147 -66253112 - L1_Mus1 LINE L1 -432 5451 5285 4 1243 6156 78 23 1 chr5 86284148 86285165 -66252094 + L1_Mus1 LINE L1 5503 6570 -12 4 1243 1091 276 123 16 chr5 86285299 86285803 -66251456 + Lx9 LINE L1 7060 7617 -27 4 1243 775 311 84 26 chr5 86286273 86286370 -66250889 + MER90a LTR ERV1 70 167 -447 4 1243 3084 61 5 8 chr5 86286370 86286767 -66250492 + MTA_Mm LTR MaLR 1 396 0 4 1243 775 311 84 26 chr5 86286767 86287049 -66250210 + MER90a LTR ERV1 168 470 -144 4 1243 423 0 0 0 chr5 86287882 86287929 -66249330 + (TA)n Simple_repeat Simple_repeat 1 47 0 4 1243 1682 239 99 12 chr5 86288106 86288521 -66248738 + Lx5 LINE L1 6600 7050 0 4 1243 3382 158 23 10 chr5 86288559 86289173 -66248086 - L1_Mur2 LINE L1 0 5877 5256 4 1243 5366 126 6 19 chr5 86289571 86291158 -66246101 + L1Md_A LINE L1 446 1993 -3890 4 1243 36206 34 1 7 chr5 86291189 86296374 -66240885 + L1Md_F2 LINE L1 441 5586 -297 4 1243 7990 49 1 2 chr5 86296374 86297401 -66239858 + L1Md_F2 LINE L1 5587 6582 0 4 1243 506 288 0 0 chr5 86300355 86300494 -66236765 + Lx7 LINE L1 6941 7079 -617 4 1243 2009 92 117 3 chr5 86300492 86300846 -66236413 - L1_Mus3 LINE L1 -701 5937 5547 4 1243 4925 87 4 79 chr5 86300846 86301312 -66235947 + L1_Mus3 LINE L1 5920 6376 -262 4 1243 868 83 105 8 chr5 86301312 86301445 -66235814 + B1_Mus1 SINE Alu 2 147 -1 4 1243 4925 87 4 79 chr5 86301445 86301749 -66235510 + L1_Mus3 LINE L1 6377 6632 -6 4 1243 588 331 19 52 chr5 86301767 86302076 -66235183 + Lx7 LINE L1 7069 7367 -329 4 1243 1065 161 128 67 chr5 86302941 86303039 -66234220 - Lx9 LINE L1 -1 7643 7546 4 1243 655 210 48 20 chr5 86303039 86303185 -66234074 - B1_Mur4 SINE Alu 0 150 1 4 1243 1065 161 128 67 chr5 86303185 86303398 -66233861 - Lx9 LINE L1 -99 7545 7313 4 1243 615 301 102 10 chr5 86303448 86303653 -66233606 - B4A SINE B4 -68 224 1 4 1243 2081 131 3 34 chr5 86304156 86304505 -66232754 - Lx3A LINE L1 -11 6970 6633 4 1243 1059 80 0 0 chr5 86304975 86305113 -66232146 + B1_Mm SINE Alu 2 139 -8 4 1243 395 19 19 0 chr5 86305113 86305165 -66232094 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1243 265 275 0 14 chr5 86305388 86305458 -66231801 + GA-rich Low_complexity Low_complexity 2 70 0 4 1243 7360 83 14 11 chr5 86305555 86306842 -66230417 - L1_Mus2 LINE L1 0 6566 5270 4 1243 579 29 0 0 chr5 86306842 86306911 -66230348 + (TTTTA)n Simple_repeat Simple_repeat 2 70 0 4 1243 3981 118 39 2 chr5 86306911 86306936 -66230323 - L1_Mus2 LINE L1 -614 5269 5244 4 1243 5712 135 14 37 chr5 86306938 86308492 -66228767 - L1_Mus2 LINE L1 -3771 2112 588 4 1243 22 35 0 0 chr5 86308924 86308953 -66228306 + AT_rich Low_complexity Low_complexity 1 29 0 4 1243 334 264 0 36 chr5 86309288 86309398 -66227861 + Lx9 LINE L1 7379 7484 -160 4 1243 28 48 0 0 chr5 86309459 86309501 -66227758 + AT_rich Low_complexity Low_complexity 1 42 0 4 1243 4765 118 59 16 chr5 86309703 86310956 -66226303 + L1VL1 LINE L1 195 1504 -2194 4 1243 14797 130 2 178 chr5 86310953 86312457 -66224802 + L1_Mus2 LINE L1 2935 4438 -1445 4 1243 1029 117 0 0 chr5 86312457 86312602 -66224657 + B1_Mus1 SINE Alu 4 148 0 4 1243 14797 130 2 178 chr5 86312602 86313539 -66223720 + L1_Mus2 LINE L1 4439 4753 -1130 4 1243 464 0 18 0 chr5 86313539 86313595 -66223664 + (TAA)n Simple_repeat Simple_repeat 1 57 0 4 1243 14797 116 58 120 chr5 86313595 86315379 -66221880 + L1_Mus2 LINE L1 4754 6566 0 4 1243 333 280 20 0 chr5 86315731 86315831 -66221428 + MER110A LTR ERV1 74 175 -293 4 1243 1588 21 21 0 chr5 86315955 86316143 -66221116 + B2_Mm1t SINE B2 2 193 0 4 1243 272 283 50 58 chr5 86316269 86316389 -66220870 + Lx4B LINE L1 6935 7053 -5 4 1243 393 89 0 0 chr5 86316681 86316737 -66220522 + URR1B DNA MER1_type 170 225 0 4 1243 270 312 53 44 chr5 86317363 86317477 -66219782 - MIRb SINE MIR -39 229 115 4 1243 195 182 0 22 chr5 86317610 86317655 -66219604 + L3 LINE CR1 2339 2382 -2107 4 1243 891 278 100 24 chr5 86317746 86318037 -66219222 + MLT1A0 LTR MaLR 34 346 -19 4 1243 307 260 96 0 chr5 86318139 86318243 -66219016 - MER103 DNA DNA -36 130 17 4 1243 673 292 25 98 chr5 86318680 86318915 -66218344 + B4 SINE B4 1 218 -74 4 1243 1922 64 0 8 chr5 86319125 86319376 -66217883 - L1_Mus1 LINE L1 0 6567 6319 4 1243 1108 232 35 101 chr5 86319912 86320310 -66216949 + L1_Rod LINE L1 4173 4544 -1303 4 1243 5479 10 2 0 chr5 86320318 86320943 -66216316 + L1Md_A LINE L1 4961 5586 -297 4 1243 8793 15 0 0 chr5 86320943 86321939 -66215320 + L1Md_A LINE L1 5587 6582 0 4 1243 1257 186 17 145 chr5 86321955 86322369 -66214890 + L1_Rod LINE L1 4556 4916 -931 4 1243 822 21 0 0 chr5 86322384 86322480 -66214779 + (GGGGA)n Simple_repeat Simple_repeat 2 97 0 4 1243 231 256 26 0 chr5 86322599 86322677 -66214582 + (TA)n Simple_repeat Simple_repeat 1 80 0 4 1243 282 160 0 0 chr5 86324265 86324315 -66212944 + T-rich Low_complexity Low_complexity 1 50 0 4 1243 483 281 39 46 chr5 86324688 86324841 -66212418 + B3A SINE B2 47 198 0 4 1243 369 366 82 37 chr5 86326040 86326284 -66210975 + MIRb SINE MIR 8 262 -6 4 1243 721 301 59 0 chr5 86326367 86326570 -66210689 + MTE2b LTR MaLR 113 327 -52 4 1243 219 235 0 14 chr5 86327399 86327445 -66209814 + T-rich Low_complexity Low_complexity 27 72 0 4 1243 216 67 0 0 chr5 86327445 86327475 -66209784 + (TTG)n Simple_repeat Simple_repeat 1 30 0 4 1243 219 235 0 14 chr5 86327475 86327497 -66209762 + T-rich Low_complexity Low_complexity 5 26 0 4 1243 310 169 39 13 chr5 86327650 86327670 -66209589 + A-rich Low_complexity Low_complexity 4 23 0 4 1243 495 48 0 0 chr5 86327670 86327732 -66209527 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 4 1243 310 169 39 13 chr5 86327732 86327789 -66209470 + A-rich Low_complexity Low_complexity 24 83 0 4 1243 1400 39 0 11 chr5 86327791 86327971 -66209288 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 4 1243 198 0 0 0 chr5 86327972 86327994 -66209265 + (GAAAA)n Simple_repeat Simple_repeat 1 22 0 4 1243 359 335 64 35 chr5 86328608 86328781 -66208478 + MLT1B LTR MaLR 2 179 -211 4 1243 315 228 51 0 chr5 86328865 86328944 -66208315 + MLT1B LTR MaLR 308 390 0 4 1243 3991 53 6 14 chr5 86329378 86329893 -66207366 - L1_Mus1 LINE L1 0 6567 6057 4 1243 577 349 60 92 chr5 86329912 86330196 -66207063 - MLT1A LTR MaLR -94 280 6 4 1243 1930 201 94 12 chr5 86330621 86331048 -66206211 + RMER20A LTR ERVK 55 516 0 4 1243 305 250 37 12 chr5 86331790 86331871 -66205388 - MLT1C LTR MaLR 0 467 385 4 1243 189 94 0 0 chr5 86331873 86331905 -66205354 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1243 2106 153 42 3 chr5 86332135 86332488 -66204771 - ORR1B2 LTR MaLR 0 367 1 4 1243 417 332 85 77 chr5 86332942 86333177 -66204082 + B4A SINE B4 33 269 -23 4 1243 1239 132 98 7 chr5 86333175 86333431 -66203828 - ORR1B2 LTR MaLR -8 359 4 4 1243 195 139 0 0 chr5 86333478 86333514 -66203745 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1243 230 247 58 23 chr5 86333650 86333737 -66203522 - L2a LINE L2 -4 3422 3333 4 1243 23 0 0 0 chr5 86333879 86333902 -66203357 + AT_rich Low_complexity Low_complexity 1 23 0 4 1243 189 0 0 0 chr5 86335100 86335121 -66202138 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1243 468 0 0 0 chr5 86335121 86335172 -66202087 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1243 252 308 9 27 chr5 86335351 86335461 -66201798 + GA-rich Low_complexity Low_complexity 3 110 0 5 1243 2868 82 16 0 chr5 86335764 86336152 -66201107 + Lx3_Mus LINE L1 6616 7009 0 5 1243 455 311 166 12 chr5 86336183 86336606 -66200653 + L2a LINE L2 2545 3032 -387 5 1243 301 342 80 7 chr5 86336769 86336919 -66200340 + L2a LINE L2 3226 3386 -40 5 1243 326 298 0 28 chr5 86337155 86337262 -66199997 + GA-rich Low_complexity Low_complexity 4 107 0 5 1243 311 317 89 27 chr5 86337262 86337408 -66199851 + HAL1-3A_ME LINE L1 2284 2438 -420 5 1243 957 283 32 53 chr5 86338782 86339215 -66198044 + Lx9 LINE L1 7015 7438 -206 5 1243 545 0 15 0 chr5 86339232 86339297 -66197962 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1243 28 0 0 0 chr5 86339418 86339446 -66197813 + AT_rich Low_complexity Low_complexity 1 28 0 5 1243 4943 193 78 10 chr5 86339468 86340579 -66196680 - Lx9 LINE L1 -1 7643 6457 5 1243 1609 121 4 0 chr5 86340610 86340858 -66196401 - Lx2 LINE L1 0 6997 6749 5 1243 637 129 57 0 chr5 86340858 86340982 -66196277 - Lx2 LINE L1 -9 6988 6858 5 1243 342 0 0 0 chr5 86341138 86341176 -66196083 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5 1243 1232 41 0 7 chr5 86341688 86341836 -66195423 + B1_Mus1 SINE Alu 2 148 0 5 1243 260 387 51 78 chr5 86342477 86342771 -66194488 - ORR1E LTR MaLR -20 339 54 5 1243 247 297 27 0 chr5 86342995 86343069 -66194190 - MLT1J LTR MaLR -337 175 100 5 1243 1441 260 25 8 chr5 86343150 86343518 -66193741 + Lx6 LINE L1 7078 7451 -9 5 1243 380 290 53 15 chr5 86344674 86344807 -66192452 + MLT1A1 LTR MaLR 33 170 -238 5 1243 181 57 0 54 chr5 86344816 86344853 -66192406 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1243 592 287 6 0 chr5 86345031 86345195 -66192064 - RSINE1 SINE B4 0 165 1 5 1243 227 256 25 13 chr5 86345216 86345295 -66191964 + CT-rich Low_complexity Low_complexity 3 82 0 5 1243 378 0 0 0 chr5 86345302 86345344 -66191915 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 5 1243 402 264 36 0 chr5 86345358 86345468 -66191791 + Lx6 LINE L1 7286 7399 -61 5 1243 271 264 91 11 chr5 86345530 86345618 -66191641 + MLT1A1 LTR MaLR 241 335 -73 5 1243 371 343 50 83 chr5 86345848 86346150 -66191109 + B4A SINE B4 1 292 0 5 1243 260 247 12 0 chr5 86346150 86346235 -66191024 + (CA)n Simple_repeat Simple_repeat 1 86 0 5 1243 238 241 0 0 chr5 86346833 86346891 -66190368 - MLT1D LTR MaLR -1 504 447 5 1243 372 311 178 34 chr5 86347027 86347296 -66189963 + MLT1A1 LTR MaLR 98 405 -3 5 1243 285 162 0 0 chr5 86348780 86348848 -66188411 + CT-rich Low_complexity Low_complexity 2 69 0 5 1243 1152 304 78 28 chr5 86348989 86349644 -66187615 + Lx7 LINE L1 6507 7197 -276 5 1243 591 282 66 28 chr5 86349729 86349911 -66187348 + B3A SINE B2 9 197 -1 5 1243 23 0 0 0 chr5 86350059 86350082 -66187177 + AT_rich Low_complexity Low_complexity 1 23 0 5 1243 267 227 0 0 chr5 86350645 86350711 -66186548 + (TATG)n Simple_repeat Simple_repeat 2 67 0 5 1243 246 324 97 51 chr5 86351506 86351763 -66185496 - LTR90A LTR LTR -402 574 306 5 1243 390 307 79 0 chr5 86352197 86352327 -66184932 - B1F SINE Alu -7 142 2 5 1243 633 259 50 25 chr5 86352506 86352704 -66184555 + MER58B DNA MER1_type 72 274 -67 5 1243 180 111 0 0 chr5 86353030 86353057 -66184202 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 5 1243 285 337 52 10 chr5 86353557 86353653 -66183606 + MLT1I LTR MaLR 238 337 -74 5 1243 274 313 30 13 chr5 86353977 86354079 -66183180 - B1F SINE Alu -7 142 42 5 1243 242 269 37 37 chr5 86354103 86354238 -66183021 + Lx7 LINE L1 7345 7479 -217 5 1243 21 0 0 0 chr5 86354238 86354259 -66183000 + AT_rich Low_complexity Low_complexity 1 21 0 5 1243 4637 158 26 11 chr5 86354312 86354670 -66182589 - Lx4B LINE L1 -543 6515 6151 5 1243 468 0 0 0 chr5 86354670 86354722 -66182537 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1243 4637 158 26 11 chr5 86354722 86355216 -66182043 - Lx4B LINE L1 -908 6150 5650 5 1243 324 290 21 11 chr5 86355327 86355421 -66181838 + MER20 DNA MER1_type 123 217 -2 5 1243 21 0 0 0 chr5 86355515 86355536 -66181723 + AT_rich Low_complexity Low_complexity 1 21 0 5 1243 1449 89 0 0 chr5 86355637 86355828 -66181431 + B2_Mm1a SINE B2 1 191 -2 5 1243 1195 88 88 5 chr5 86355981 86356051 -66181208 - MusHAL1 LINE L1 -773 1939 1866 5 1243 198 0 0 0 chr5 86356051 86356073 -66181186 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 5 1243 1195 88 88 5 chr5 86356073 86356218 -66181041 - MusHAL1 LINE L1 -847 1865 1707 5 1243 7702 79 12 9 chr5 86356203 86357899 -66179360 - L1Md_F2 LINE L1 -102 6907 5182 5 1243 2540 70 0 6 chr5 86357942 86358285 -66178974 - L1Md_F2 LINE L1 -12 6570 6230 5 1243 232 341 60 60 chr5 86358415 86358649 -66178610 - MLT1K LTR MaLR -30 565 332 5 1243 2658 25 12 0 chr5 86359885 86360207 -66177052 + L1Md_F3 LINE L1 6245 6570 -14 5 1243 493 328 15 79 chr5 86360293 86360495 -66176764 + MLT2B2 LTR ERVL 364 552 -10 5 1243 409 282 86 0 chr5 86360733 86360850 -66176409 + B1F1 SINE Alu 10 136 -13 5 1243 21 0 0 0 chr5 86361222 86361243 -66176016 + AT_rich Low_complexity Low_complexity 1 21 0 5 1243 1690 200 96 19 chr5 86361959 86362336 -66174923 - MTD LTR MaLR -13 406 1 5 1243 492 18 0 0 chr5 86362390 86362447 -66174812 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1243 726 275 115 3 chr5 86362570 86362917 -66174342 + L1MC1 LINE L1 5592 5977 -356 5 1243 376 302 60 14 chr5 86362981 86363196 -66174063 + L1MC1 LINE L1 6091 6315 -18 5 1243 279 0 0 0 chr5 86364581 86364612 -66172647 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1243 206 231 0 0 chr5 86364880 86364919 -66172340 + (CATA)n Simple_repeat Simple_repeat 2 40 0 5 1243 4651 72 3 2 chr5 86365032 86365643 -66171616 + L1_Mus3 LINE L1 6024 6635 -3 5 1243 510 283 52 47 chr5 86367984 86368177 -66169082 + MLT1A0 LTR MaLR 1 194 -171 5 1243 288 0 0 0 chr5 86368246 86368278 -66168981 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1243 211 306 181 0 chr5 86368465 86368537 -66168722 + MIR SINE MIR 1 85 -177 5 1243 3018 101 14 0 chr5 86369655 86370099 -66167160 + L1_Mus4 LINE L1 5701 6150 -486 5 1243 585 293 83 0 chr5 86370601 86370756 -66166503 + MTE2b LTR MaLR 171 329 -50 5 1243 399 21 0 0 chr5 86370756 86370804 -66166455 + (TTG)n Simple_repeat Simple_repeat 1 48 0 5 1243 585 293 83 0 chr5 86370804 86370829 -66166430 + MTE2b LTR MaLR 330 364 -15 5 1243 243 0 0 0 chr5 86371267 86371294 -66165965 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1243 401 382 33 9 chr5 86371428 86371642 -66165617 - MLT1B LTR MaLR -45 345 127 5 1243 1086 129 18 21 chr5 86371663 86371862 -66165397 - LTRIS3 LTR ERV1 0 587 339 5 1243 348 257 57 0 chr5 86372254 86372359 -66164900 - MLT1B LTR MaLR -275 115 5 5 1243 492 29 0 14 chr5 86372561 86372630 -66164629 + L1_Mus2 LINE L1 6499 6566 0 5 1243 446 252 10 0 chr5 86372904 86373003 -66164256 - ID_B1 SINE B4 -34 190 91 5 1243 722 257 43 19 chr5 86373142 86373352 -66163907 + Lx5 LINE L1 6832 7046 -4 5 1243 552 193 152 48 chr5 86374504 86374629 -66162630 + B1_Mus2 SINE Alu 9 146 -1 5 1243 1065 97 11 17 chr5 86374660 86374839 -66162420 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 5 1243 216 0 0 0 chr5 86374839 86374863 -66162396 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 5 1243 3263 85 28 7 chr5 86374874 86375337 -66161922 - L1_Mus3 LINE L1 0 6638 6166 5 1243 1075 109 0 0 chr5 86375338 86375485 -66161774 - B1_Mus1 SINE Alu 0 148 2 5 1243 290 188 260 0 chr5 86375603 86375699 -66161560 - Lx9 LINE L1 -9 7635 7515 5 1243 3932 86 53 4 chr5 86375699 86376261 -66160998 + Lx LINE L1 6065 6654 0 5 1243 320 277 172 25 chr5 86376320 86376442 -66160817 - MER34A LTR ERV1 -431 140 1 5 1244 755 64 9 0 chr5 86377368 86377478 -66159781 + (TG)n Simple_repeat Simple_repeat 2 112 0 5 1244 425 269 83 0 chr5 86377483 86377591 -66159668 - RSINE1 SINE B4 -45 120 4 5 1244 365 255 4 4 chr5 86378040 86378310 -66158949 + (TG)n Simple_repeat Simple_repeat 1 270 0 5 1244 545 0 15 0 chr5 86378310 86378375 -66158884 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1244 23 0 0 0 chr5 86379089 86379112 -66158147 + AT_rich Low_complexity Low_complexity 1 23 0 5 1244 195 139 0 0 chr5 86379346 86379382 -66157877 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1244 276 291 142 21 chr5 86379943 86380040 -66157219 - L1M4b LINE L1 -4918 2090 1986 5 1244 3470 23 2 0 chr5 86380040 86380435 -66156824 + MTA_Mm LTR MaLR 1 396 0 5 1244 9136 34 4 1 chr5 86380435 86381530 -66155729 + MTA_Mm-int LTR MaLR 1 1098 0 5 1244 3470 23 2 0 chr5 86381530 86381925 -66155334 + MTA_Mm LTR MaLR 1 396 0 5 1244 791 245 155 11 chr5 86381925 86382411 -66154848 - L1M4b LINE L1 -5023 1985 1370 5 1244 267 255 0 0 chr5 86382466 86382517 -66154742 - B1F SINE Alu -33 116 66 5 1244 363 215 0 0 chr5 86382765 86382774 -66154485 + (TA)n Simple_repeat Simple_repeat 2 10 0 5 1244 555 88 0 0 chr5 86382774 86382865 -66154394 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 5 1244 363 215 0 0 chr5 86382865 86382999 -66154260 + (TA)n Simple_repeat Simple_repeat 2 135 0 5 1244 690 290 131 78 chr5 86383003 86383362 -66153897 - MLT2D LTR ERVL -34 380 3 5 1244 577 359 30 9 chr5 86383522 86383859 -66153400 - Lx8 LINE L1 -157 7316 6973 5 1244 23 0 0 0 chr5 86383966 86383989 -66153270 + AT_rich Low_complexity Low_complexity 1 23 0 5 1244 219 36 0 0 chr5 86384429 86384457 -66152802 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1244 244 310 79 9 chr5 86385097 86385211 -66152048 - L1M4b LINE L1 -6399 935 814 5 1244 240 143 0 0 chr5 86385242 86385298 -66151961 + (A)n Simple_repeat Simple_repeat 1 56 0 5 1244 464 367 70 36 chr5 86385312 86385699 -66151560 - L1M4b LINE L1 -6601 733 334 5 1244 441 36 0 0 chr5 86386959 86387014 -66150245 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1244 333 253 24 0 chr5 86387629 86387712 -66149547 - Tigger5 DNA MER2_type -2244 162 78 5 1244 303 323 62 0 chr5 86388180 86388276 -66148983 + HAL1-3A_ME LINE L1 2284 2385 -473 5 1244 21 0 0 0 chr5 86388628 86388649 -66148610 + AT_rich Low_complexity Low_complexity 1 21 0 5 1244 672 266 65 10 chr5 86388760 86388961 -66148298 - B3 SINE B2 0 216 5 6 1244 706 161 138 0 chr5 86388997 86389127 -66148132 - B1_Mus1 SINE Alu 0 148 1 6 1244 320 381 86 37 chr5 86389418 86389745 -66147514 - MLT1J2 LTR MaLR -104 344 2 6 1244 1733 103 11 34 chr5 86389938 86390200 -66147059 - Lx2 LINE L1 0 6997 6742 6 1244 508 159 0 33 chr5 86390569 86390660 -66146599 + ORR1D1 LTR MaLR 1 88 -286 6 1244 321 185 0 0 chr5 86390664 86390729 -66146530 + CT-rich Low_complexity Low_complexity 3 67 0 6 1244 509 236 72 7 chr5 86390731 86390888 -66146371 + ORR1D1 LTR MaLR 239 405 -14 6 1244 3111 43 0 6 chr5 86390890 86391238 -66146021 - ORR1A1 LTR MaLR 0 346 1 6 1244 329 0 0 24 chr5 86391390 86391432 -66145827 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 6 1244 1152 125 0 0 chr5 86391432 86391592 -66145667 - B2_Mm2 SINE B2 -34 161 2 6 1244 3254 163 95 14 chr5 86391940 86392573 -66144686 + RLTR17 LTR ERVK 6 689 -3 6 1244 495 0 0 0 chr5 86393771 86393826 -66143433 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 1244 414 0 0 0 chr5 86393826 86393871 -66143388 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1244 235 342 25 8 chr5 86393918 86394036 -66143223 + L1M5 LINE L1 5526 5645 -528 6 1244 894 324 104 32 chr5 86394204 86394644 -66142615 - MLT2B1 LTR ERVL -48 472 1 6 1244 2460 35 0 21 chr5 86396055 86396346 -66140913 + L1Md_F2 LINE L1 6298 6582 0 6 1244 317 318 0 45 chr5 86396502 86396591 -66140668 - RMER20A LTR ERVK -24 492 408 6 1244 201 162 0 0 chr5 86397075 86397112 -66140147 + A-rich Low_complexity Low_complexity 1 37 0 6 1244 1044 141 30 10 chr5 86397356 86397556 -66139703 - Lx LINE L1 -7 6647 6444 6 1244 1827 71 0 0 chr5 86397966 86398190 -66139069 - L1_Mus1 LINE L1 0 6567 6344 6 1244 3865 81 0 0 chr5 86398190 86398775 -66138484 - L1_Mus1 LINE L1 -496 6071 5487 6 1244 25098 105 19 13 chr5 86398779 86403237 -66134022 - L1_Mus1 LINE L1 -1045 4838 355 6 1244 216 0 0 0 chr5 86403270 86403294 -66133965 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 6 1244 1913 129 17 13 chr5 86403320 86403619 -66133640 - Lx4A LINE L1 -1 7057 6758 6 1244 1532 204 99 19 chr5 86404077 86404451 -66132808 - MTD LTR MaLR -11 408 5 6 1244 243 23 44 22 chr5 86405060 86405105 -66132154 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 6 1244 3288 63 10 0 chr5 86406097 86406493 -66130766 - MTB LTR MaLR 0 400 1 6 1244 849 213 0 0 chr5 86407787 86407937 -66129322 + B1_Mur4 SINE Alu 1 150 0 6 1244 645 358 49 28 chr5 86407998 86408389 -66128870 + L1MCb LINE L1 171 569 -5476 6 1244 808 255 89 74 chr5 86408487 86408918 -66128341 + RMER13A LTR ERVK 96 586 -41 6 1244 506 297 102 92 chr5 86409188 86409835 -66127424 + L1MCb LINE L1 603 1411 -5340 6 1244 264 77 0 0 chr5 86409835 86409874 -66127385 + (TA)n Simple_repeat Simple_repeat 2 40 0 6 1244 506 269 114 152 chr5 86409874 86409915 -66127344 + L1MCb LINE L1 1412 1455 -5296 6 1244 232 254 113 0 chr5 86409915 86409986 -66127273 - B4A SINE B4 -139 153 75 6 1244 506 269 114 152 chr5 86409986 86410244 -66127015 + L1MCb LINE L1 1456 1738 -5013 6 1244 286 327 45 20 chr5 86410555 86410789 -66126470 - L1M4 LINE L1 -545 5899 5662 6 1244 369 0 0 0 chr5 86410832 86410873 -66126386 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1244 504 256 67 87 chr5 86410931 86411243 -66126016 - L1M4 LINE L1 -512 5667 5362 6 1244 207 0 0 0 chr5 86411493 86411516 -66125743 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 6 1244 827 260 24 24 chr5 86411635 86411848 -66125411 - B3 SINE B2 -3 213 1 6 1244 7452 28 1 0 chr5 86412100 86412919 -66124340 - L1Md_T LINE L1 0 6582 5763 6 1244 744 174 0 0 chr5 86412919 86413040 -66124219 - B1_Mus2 SINE Alu -18 129 9 6 1244 334 300 80 0 chr5 86413131 86413231 -66124028 - PB1D10 SINE Alu -5 112 5 6 1244 25 0 0 0 chr5 86413260 86413285 -66123974 + AT_rich Low_complexity Low_complexity 1 25 0 6 1244 337 286 12 12 chr5 86413293 86413378 -66123881 - RSINE1 SINE B4 -11 154 70 6 1244 811 300 137 33 chr5 86413407 86414605 -66122654 - L1M4 LINE L1 -873 5273 3916 6 1244 295 312 91 9 chr5 86414625 86414735 -66122524 - B3A SINE B2 -18 180 62 6 1244 2355 170 127 2 chr5 86414730 86415196 -66122063 + RLTR24 LTR ERV1 6 529 0 6 1244 267 219 0 2 chr5 86415202 86415259 -66122000 - B3A SINE B2 -150 66 11 6 1244 242 279 81 38 chr5 86416041 86416201 -66121058 - L1M4 LINE L1 -2315 3831 3665 6 1244 277 286 38 38 chr5 86416846 86416977 -66120282 + MIR SINE MIR 52 182 -80 6 1244 188 339 90 30 chr5 86417634 86417768 -66119491 - MIR SINE MIR -69 193 52 6 1244 482 312 151 26 chr5 86417854 86418174 -66119085 - MLT1A0 LTR MaLR 0 374 3 6 1244 192 40 0 0 chr5 86418847 86418872 -66118387 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1244 230 242 53 32 chr5 86419288 86419382 -66117877 - MIRc SINE MIR 0 268 173 6 1244 920 95 16 8 chr5 86420066 86420218 -66117041 - B2_Mm2 SINE B2 -39 159 2 6 1244 251 203 16 0 chr5 86420394 86420458 -66116801 + Lx6 LINE L1 7366 7430 -30 6 1244 212 310 81 0 chr5 86420787 86420874 -66116385 - PB1D10 SINE Alu 0 117 24 6 1244 4954 197 45 17 chr5 86421404 86421538 -66115721 - RMER1A Other Other 0 1030 877 6 1244 192 40 0 0 chr5 86421538 86421563 -66115696 + (CAGAGA)n Simple_repeat Simple_repeat 4 28 0 6 1244 4954 220 51 37 chr5 86421563 86422753 -66114506 - RMER1A Other Other -154 876 8 6 1244 216 67 0 0 chr5 86422837 86422867 -66114392 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1244 293 200 35 128 chr5 86422868 86422954 -66114305 - PB1D9 SINE Alu -13 107 30 6 1244 519 60 0 0 chr5 86423471 86423538 -66113721 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 6 1244 239 289 179 37 chr5 86424725 86424887 -66112372 - MLT1H LTR MaLR -81 468 284 6 1244 252 120 0 0 chr5 86425016 86425066 -66112193 + (T)n Simple_repeat Simple_repeat 1 50 0 6 1244 866 81 186 0 chr5 86425066 86425190 -66112069 - B1_Mm SINE Alu 0 147 1 6 1244 1710 70 0 54 chr5 86425197 86425439 -66111820 - L1_Mus1 LINE L1 0 6567 6339 6 1244 1307 59 6 0 chr5 86425439 86425608 -66111651 + L1_Mus1 LINE L1 5918 6087 -480 6 1244 835 150 186 24 chr5 86426421 86426685 -66110574 - ORR1A4 LTR MaLR -8 338 1 6 1244 254 257 124 35 chr5 86426734 86426847 -66110412 - MLT1A1 LTR MaLR -282 126 4 6 1244 1581 236 37 39 chr5 86426933 86427290 -66109969 + MTD LTR MaLR 1 356 -63 6 1244 3972 35 28 13 chr5 86427290 86427758 -66109501 + MT2C_Mm LTR ERVL 1 475 0 6 1244 1581 236 37 39 chr5 86427758 86427806 -66109453 + MTD LTR MaLR 357 405 -14 6 1244 14069 41 9 15 chr5 86427877 86430395 -66106864 + L1Md_F3 LINE L1 439 2928 -2955 6 1244 7156 50 0 2 chr5 86430392 86431269 -66105990 + L1Md_F3 LINE L1 4712 5586 -297 6 1244 8420 48 14 1 chr5 86431269 86432254 -66105005 + L1Md_F3 LINE L1 5587 6584 0 6 1244 282 304 88 0 chr5 86432486 86432588 -66104671 + PB1D10 SINE Alu 3 113 -4 6 1244 1258 79 0 12 chr5 86433052 86433219 -66104040 + B2_Mm2 SINE B2 2 166 -29 6 1244 342 152 0 0 chr5 86433219 86433278 -66103981 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 6 1244 229 312 26 0 chr5 86433282 86433359 -66103900 + RLTR22_Mus LTR ERVK 1262 1340 -468 6 1244 264 271 34 0 chr5 86434197 86434256 -66103003 + ID SINE ID 8 68 -156 6 1244 901 158 116 6 chr5 86434256 86434428 -66102831 - MTC LTR MaLR -1 420 230 6 1244 37935 27 1 7 chr5 86434729 86439916 -66097343 + L1Md_T LINE L1 441 5586 -297 6 1244 9050 31 0 0 chr5 86439916 86440912 -66096347 + L1Md_T LINE L1 5587 6582 0 6 1244 21 0 0 0 chr5 86441054 86441075 -66096184 + AT_rich Low_complexity Low_complexity 1 21 0 6 1244 249 224 64 26 chr5 86441861 86441939 -66095320 + ID4 SINE ID 1 81 -2 6 1244 21 0 0 0 chr5 86442536 86442557 -66094702 + AT_rich Low_complexity Low_complexity 1 21 0 6 1244 297 325 120 49 chr5 86442610 86442788 -66094471 + MLT1E1A LTR MaLR 5 215 -412 6 1244 489 17 0 0 chr5 86442788 86442846 -66094413 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1244 277 338 159 90 chr5 86442846 86442916 -66094343 + MLT1E1A LTR MaLR 216 273 -354 6 1244 2178 61 35 21 chr5 86442916 86443199 -66094060 - L1Md_F2 LINE L1 0 6582 6296 6 1244 299 329 158 36 chr5 86443199 86443528 -66093731 + MLT1E1A LTR MaLR 274 676 -4 6 1244 223 301 150 0 chr5 86443935 86444048 -66093211 - MIR SINE MIR -122 140 11 6 1244 23 0 0 0 chr5 86444109 86444132 -66093127 + AT_rich Low_complexity Low_complexity 1 23 0 6 1244 508 284 77 19 chr5 86444284 86444543 -66092716 + L1M1 LINE L1 5319 5592 -708 6 1244 246 244 64 0 chr5 86444612 86444690 -66092569 + L1M1 LINE L1 5812 5894 -406 6 1244 438 125 114 23 chr5 86444872 86445003 -66092256 - Lx9 LINE L1 -6 7638 7496 6 1244 418 194 14 0 chr5 86445003 86445075 -66092184 - RLTR20B2 LTR ERVK 0 560 488 6 1244 243 325 79 31 chr5 86445441 86445568 -66091691 + MIR SINE MIR 20 152 -110 6 1244 545 157 61 0 chr5 86446016 86446131 -66091128 + B1_Mus2 SINE Alu 19 140 -7 6 1244 1531 134 113 50 chr5 86446400 86446737 -66090522 + ORR1C2 LTR MaLR 5 362 -22 6 1244 236 258 0 31 chr5 86447282 86447346 -66089913 + GA-rich Low_complexity Low_complexity 1 62 0 6 1244 2837 33 0 0 chr5 86447955 86448288 -66088971 + L1_Mus1 LINE L1 6225 6557 -10 6 1244 2906 52 0 0 chr5 86448288 86448673 -66088586 - L1_Mm LINE L1 -2853 3030 2646 6 1244 8333 35 0 0 chr5 86448673 86449716 -66087543 + L1Md_T LINE L1 5601 6582 0 6 1244 225 0 0 0 chr5 86450224 86450249 -66087010 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1244 3683 35 0 0 chr5 86450385 86450818 -66086441 + L1Md_F2 LINE L1 6140 6572 -10 6 1244 34 0 0 0 chr5 86450823 86450857 -66086402 + AT_rich Low_complexity Low_complexity 1 34 0 6 1244 451 258 76 33 chr5 86450922 86451106 -66086153 + B3A SINE B2 2 193 -5 6 1244 341 296 64 32 chr5 86452121 86452529 -66084730 + Lx7 LINE L1 857 1277 -6451 6 1244 5090 116 87 24 chr5 86452553 86453384 -66083875 + Lx LINE L1 5756 6638 -16 6 1244 189 0 0 0 chr5 86453393 86453414 -66083845 + (TA)n Simple_repeat Simple_repeat 1 21 0 6 1244 857 216 78 0 chr5 86453467 86453736 -66083523 + Lx7 LINE L1 1316 1605 -4275 6 1244 1116 211 58 45 chr5 86453755 86454137 -66083122 + Lx7 LINE L1 3336 3722 -2158 6 1244 922 166 120 80 chr5 86454136 86454411 -66082848 + Lx5 LINE L1 6762 7047 -3 6 1244 5234 194 118 11 chr5 86454464 86454513 -66082746 + Lx7 LINE L1 4324 4376 -1504 6 1244 366 23 0 0 chr5 86454513 86454556 -66082703 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1244 5234 194 118 11 chr5 86454556 86455184 -66082075 + Lx7 LINE L1 4377 5090 -790 6 1244 1393 201 80 53 chr5 86455184 86455558 -66081701 + ORR1C2 LTR MaLR 1 384 0 6 1244 5234 236 110 15 chr5 86455558 86457102 -66080157 + Lx7 LINE L1 5091 6761 -935 6 1244 231 224 17 0 chr5 86458552 86458610 -66078649 + L1_Rod LINE L1 2154 2212 -3635 6 1244 186 43 0 0 chr5 86458718 86458741 -66078518 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1244 678 200 57 36 chr5 86458944 86459136 -66078123 - B3A SINE B2 -2 196 1 7 1244 791 154 39 0 chr5 86459164 86459294 -66077965 - B1_Mus1 SINE Alu 0 148 14 7 1244 22 0 0 0 chr5 86459294 86459316 -66077943 + AT_rich Low_complexity Low_complexity 1 22 0 7 1244 2794 233 52 35 chr5 86459316 86460330 -66076929 + L1_Rod LINE L1 2198 3228 -2619 6 1244 710 186 43 7 chr5 86460536 86460677 -66076582 + B3 SINE B2 67 212 -4 7 1244 23 54 0 0 chr5 86460681 86460718 -66076541 + AT_rich Low_complexity Low_complexity 1 37 0 7 1244 22 88 0 0 chr5 86460824 86460881 -66076378 + AT_rich Low_complexity Low_complexity 1 57 0 7 1244 300 159 28 42 chr5 86460938 86461010 -66076249 - L1MC5 LINE L1 -48 7913 7843 7 1244 198 103 0 0 chr5 86461091 86461120 -66076139 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 7 1244 602 258 0 16 chr5 86461151 86461273 -66075986 - RSINE1 SINE B4 -35 130 11 7 1244 205 179 0 0 chr5 86461700 86461739 -66075520 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 7 1244 284 223 156 21 chr5 86461896 86461992 -66075267 + B1F SINE Alu 10 118 -31 7 1244 274 267 25 74 chr5 86462243 86462324 -66074935 + MLT1F1 LTR MaLR 155 231 -338 7 1244 21 0 0 0 chr5 86462914 86462935 -66074324 + AT_rich Low_complexity Low_complexity 1 21 0 7 1244 220 322 83 42 chr5 86463025 86463145 -66074114 - MIRb SINE MIR -103 165 41 7 1244 751 267 160 38 chr5 86463804 86464092 -66073167 + MTE2a LTR MaLR 47 369 -10 7 1244 182 162 81 0 chr5 86464230 86464267 -66072992 + L2a LINE L2 3315 3354 -72 7 1244 824 302 27 42 chr5 86464874 86465133 -66072126 - B4 SINE B4 -9 283 29 7 1244 429 292 96 144 chr5 86465251 86465607 -66071652 + MLT1D LTR MaLR 69 434 -71 7 1244 1349 74 0 6 chr5 86465607 86465784 -66071475 + B2_Mm2 SINE B2 4 179 -16 7 1244 429 292 96 144 chr5 86465784 86465863 -66071396 + MLT1D LTR MaLR 435 483 -22 7 1244 225 0 0 0 chr5 86466135 86466160 -66071099 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1244 1412 247 42 67 chr5 86467897 86468217 -66069042 + MTD LTR MaLR 18 338 -81 7 1244 1038 65 50 0 chr5 86468217 86468356 -66068903 + B1_Mus1 SINE Alu 3 148 0 7 1244 1412 247 42 67 chr5 86468356 86468439 -66068820 + MTD LTR MaLR 339 411 -8 7 1244 2371 232 148 153 chr5 86468443 86468841 -66068418 + MTD-int LTR MaLR 1 242 -1016 7 1244 1813 60 0 8 chr5 86468841 86469076 -66068183 + L1_Mus1 LINE L1 6335 6567 0 7 1244 2371 232 148 153 chr5 86469076 86469937 -66067322 + MTD-int LTR MaLR 243 1254 -4 7 1244 1265 223 179 9 chr5 86470002 86470342 -66066917 + MTD LTR MaLR 22 419 0 7 1244 2147 74 3 0 chr5 86470971 86471255 -66066004 + ORR1A2 LTR MaLR 1 285 -42 7 1244 1095 95 0 0 chr5 86471255 86471403 -66065856 + B1_Mus1 SINE Alu 1 148 0 7 1244 877 291 12 16 chr5 86471752 86472071 -66065188 + Lx8 LINE L1 5346 5661 -186 7 1244 381 219 132 9 chr5 86472057 86472163 -66065096 + SSU-rRNA_Hsa rRNA rRNA 849 967 -902 7 1244 354 171 14 0 chr5 86472167 86472237 -66065022 + L1_Rod LINE L1 5644 5714 -133 7 1244 975 78 0 60 chr5 86472239 86472388 -66064871 + B1_Mus2 SINE Alu 2 141 -6 7 1244 294 29 0 0 chr5 86472388 86472423 -66064836 + (GA)n Simple_repeat Simple_repeat 1 35 0 7 1244 230 254 0 0 chr5 86472424 86472487 -66064772 + Lx8 LINE L1 5729 5791 -89 7 1244 346 260 142 0 chr5 86472707 86472834 -66064425 + Lx8 LINE L1 6268 6412 -1061 7 1244 2017 25 0 12 chr5 86472847 86473089 -66064170 + L1Md_F2 LINE L1 6333 6571 -11 7 1244 1228 275 136 34 chr5 86473098 86473776 -66063483 + Lx8 LINE L1 6583 7329 -144 7 1244 261 208 103 178 chr5 86473654 86473800 -66063459 + RMER1C Other Other 1101 1235 -107 7 1244 1146 65 0 0 chr5 86473951 86474090 -66063169 + B1_Mm SINE Alu 2 140 -7 7 1244 1011 61 0 0 chr5 86474094 86474225 -66063034 + (GGAAA)n Simple_repeat Simple_repeat 3 133 0 7 1244 320 210 0 12 chr5 86474807 86474889 -66062370 + (TA)n Simple_repeat Simple_repeat 1 81 0 7 1244 369 316 78 35 chr5 86475024 86475165 -66062094 - RSINE1 SINE B4 -17 148 2 7 1244 605 199 7 0 chr5 86475986 86476132 -66061127 + (TA)n Simple_repeat Simple_repeat 1 147 0 7 1244 234 329 142 14 chr5 86477164 86477312 -66059947 + MER68 LTR ERVL 172 338 -225 7 1244 562 162 17 0 chr5 86477488 86477605 -66059654 + CT-rich Low_complexity Low_complexity 2 120 0 7 1244 649 266 62 47 chr5 86477622 86477815 -66059444 + B3A SINE B2 2 197 -1 7 1244 426 343 83 11 chr5 86477829 86478009 -66059250 - B3A SINE B2 -5 193 1 7 1244 33 25 0 0 chr5 86478113 86478153 -66059106 + AT_rich Low_complexity Low_complexity 1 40 0 7 1244 5541 40 9 7 chr5 86478210 86478888 -66058371 + L1Md_F2 LINE L1 5891 6569 -13 7 1244 1116 102 0 0 chr5 86478987 86479134 -66058125 + B1_Mus1 SINE Alu 2 148 0 7 1244 312 244 33 0 chr5 86479137 86479227 -66058032 + L1M5 LINE L1 3292 3384 -2762 7 1244 237 315 10 128 chr5 86479268 86479472 -66057787 - YREP_Mm Unknown Unknown -1447 365 186 7 1244 757 228 0 0 chr5 86479337 86479473 -66057786 + ID_B1 SINE B4 81 216 -8 7 1244 408 220 176 0 chr5 86479483 86479574 -66057685 + PB1D10 SINE Alu 1 107 -10 7 1244 384 191 0 0 chr5 86479592 86479676 -66057583 + (CA)n Simple_repeat Simple_repeat 2 85 0 7 1244 892 76 67 22 chr5 86480349 86480363 -66056896 - B1_Mus1 SINE Alu 0 148 136 7 1244 660 38 343 0 chr5 86480363 86480468 -66056791 - B1_Mm SINE Alu -5 142 2 7 1244 252 0 0 0 chr5 86480468 86480496 -66056763 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1244 892 76 67 22 chr5 86480496 86480615 -66056644 - B1_Mus1 SINE Alu -13 135 9 7 1244 234 316 26 13 chr5 86480726 86480803 -66056456 + ID4 SINE ID 6 83 0 7 1244 341 316 0 67 chr5 86481328 86481433 -66055826 + B1_Mur2 SINE Alu 1 98 -51 7 1244 860 121 55 37 chr5 86481495 86481658 -66055601 + URR1A DNA MER1_type 58 223 -3 7 1244 4042 106 3 7 chr5 86481849 86482458 -66054801 + Lx LINE L1 5667 6273 -381 7 1244 231 203 78 0 chr5 86483168 86483232 -66054027 - L1M2 LINE L1 -3330 2813 2745 7 1244 324 303 0 0 chr5 86484232 86484321 -66052938 + PB1D10 SINE Alu 27 115 -2 7 1244 350 164 144 0 chr5 86484459 86484563 -66052696 - L1_Mm LINE L1 -3759 2124 2006 7 1244 2770 94 2 19 chr5 86484563 86484976 -66052283 - L1Md_F2 LINE L1 0 6582 6177 7 1244 2375 84 14 0 chr5 86484976 86485321 -66051938 + L1Md_F2 LINE L1 5817 6166 -416 7 1244 5726 77 38 12 chr5 86485310 86486910 -66050349 - L1VL2 LINE L1 -1879 1736 89 7 1244 265 210 0 22 chr5 86487561 86487633 -66049626 - ID4 SINE ID -3 80 12 7 1244 594 136 203 0 chr5 86488067 86488185 -66049074 + B1_Mus1 SINE Alu 1 142 -6 7 1244 619 269 41 77 chr5 86488537 86488882 -66048377 - L1MD1 LINE L1 -267 6092 5738 7 1244 22 35 0 0 chr5 86489029 86489058 -66048201 + AT_rich Low_complexity Low_complexity 1 29 0 7 1244 4267 62 14 2 chr5 86489228 86489810 -66047449 + L1Md_F2 LINE L1 4998 5586 -297 7 1244 7421 70 15 5 chr5 86489810 86490796 -66046463 + L1Md_F2 LINE L1 5587 6582 0 7 1244 3743 121 22 129 chr5 86491292 86491633 -66045626 + Lx5 LINE L1 5116 5461 -416 7 1244 1184 68 0 0 chr5 86491633 86491780 -66045479 + B1_Mm SINE Alu 1 147 0 7 1244 5266 133 32 73 chr5 86491780 86493005 -66044254 + Lx5 LINE L1 5462 6605 -445 7 1244 1886 134 20 3 chr5 86493029 86493321 -66043938 + RLTR13D6 LTR ERVK 36 332 -570 7 1244 1471 144 98 23 chr5 86493318 86493623 -66043636 + RLTR13D6 LTR ERVK 442 769 -133 7 1244 309 26 0 0 chr5 86495357 86495395 -66041864 + (CATA)n Simple_repeat Simple_repeat 1 38 0 7 1244 948 223 15 0 chr5 86495427 86495633 -66041626 + B3 SINE B2 2 210 -6 7 1244 519 24 0 58 chr5 86496848 86496935 -66040324 + L1_Mus4 LINE L1 6555 6636 0 7 1244 342 254 245 40 chr5 86498031 86498327 -66038932 - MTEb LTR MaLR -4 366 13 7 1244 522 220 66 36 chr5 86498338 86498475 -66038784 + B1_Mur1 SINE Alu 1 141 -8 7 1244 213 300 33 0 chr5 86498940 86499030 -66038229 + (CATATA)n Simple_repeat Simple_repeat 3 95 0 7 1244 214 123 17 17 chr5 86499046 86499104 -66038155 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 7 1244 593 224 112 0 chr5 86499108 86499233 -66038026 - B1_Mm SINE Alu -7 140 2 7 1244 222 128 0 0 chr5 86499811 86499850 -66037409 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 7 1244 273 135 0 0 chr5 86500061 86500113 -66037146 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1244 663 248 0 20 chr5 86500194 86500346 -66036913 + B1_Mur1 SINE Alu 1 149 0 2 1244 423 0 0 0 chr5 86500673 86500720 -66036539 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1244 297 0 0 0 chr5 86501143 86501176 -66036083 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1244 187 330 37 19 chr5 86502268 86502376 -66034883 + MIRb SINE MIR 38 147 -121 5 1244 252 0 0 0 chr5 86503268 86503296 -66033963 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1244 828 76 85 116 chr5 86503306 86503470 -66033789 - B2_Mm2 SINE B2 -6 189 31 7 1244 1173 115 0 77 chr5 86504092 86504299 -66032960 - RLTR21 LTR ERVK 0 1572 1382 8 1244 768 142 17 0 chr5 86504295 86504415 -66032844 - RLTR21 LTR ERVK -1312 260 139 8 1244 425 220 5 5 chr5 86504481 86504571 -66032688 + B3 SINE B2 20 108 -108 9 1244 425 229 37 0 chr5 86504661 86504770 -66032489 + B3 SINE B2 74 186 -30 1 1244 210 182 22 22 chr5 86504932 86504977 -66032282 - B2_Mm2 SINE B2 -113 82 38 1 1244 360 64 0 0 chr5 86505023 86505070 -66032189 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 1 1244 769 172 44 7 chr5 86505103 86505238 -66032021 - B1_Mus2 SINE Alu -7 140 1 1 1244 572 213 0 81 chr5 86505331 86505479 -66031780 + B1_Mur2 SINE Alu 2 137 -12 1 1244 366 23 0 0 chr5 86505479 86505522 -66031737 + (TAA)n Simple_repeat Simple_repeat 3 45 0 1 1244 1021 237 10 10 chr5 86505994 86506203 -66031056 + B3 SINE B2 2 210 -6 1 1244 752 239 0 0 chr5 86506317 86506459 -66030800 + B1_Mur1 SINE Alu 1 142 -7 1 1244 803 64 0 9 chr5 86506486 86506597 -66030662 + (GGGA)n Simple_repeat Simple_repeat 4 113 0 1 1244 1083 27 20 0 chr5 86506604 86506751 -66030508 + (TG)n Simple_repeat Simple_repeat 2 151 0 1 1244 535 195 141 19 chr5 86506751 86506906 -66030353 + B3A SINE B2 8 192 -6 2 155 675 75 0 0 chr5 86507512 86507606 -66029653 + (GGA)n Simple_repeat Simple_repeat 3 96 0 2 1245 253 347 33 8 chr5 86507751 86507873 -66029386 + MIR SINE MIR 3 127 -135 2 1245 714 209 6 63 chr5 86508790 86508964 -66028295 + U1 snRNA snRNA 1 164 -1 2 1245 382 294 211 33 chr5 86509214 86509513 -66027746 + L3 LINE CR1 4116 4467 -22 2 1245 741 341 48 30 chr5 86509644 86510043 -66027216 - MER63D DNA AcHobo -653 408 3 2 1245 3271 46 5 0 chr5 86510372 86510766 -66026493 - MTA_Mm LTR MaLR 0 396 1 2 1245 1556 172 77 61 chr5 86511266 86511643 -66025616 + ORR1C2 LTR MaLR 1 383 -1 2 1245 1603 26 21 0 chr5 86512109 86512298 -66024961 - B2_Mm1a SINE B2 0 193 1 2 1245 304 357 66 66 chr5 86512523 86512706 -66024553 - B4 SINE B4 -109 183 1 2 1245 600 349 20 24 chr5 86513034 86513281 -66023978 - B4A SINE B4 -46 246 1 3 1245 376 282 64 0 chr5 86513487 86513597 -66023662 - PB1D7 SINE Alu -2 118 2 3 1245 1040 80 0 7 chr5 86513788 86513926 -66023333 + B1_Mus1 SINE Alu 3 139 -9 3 1245 257 0 0 29 chr5 86513926 86513960 -66023299 + (TAA)n Simple_repeat Simple_repeat 2 34 0 3 1245 270 0 0 0 chr5 86514365 86514395 -66022864 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1245 420 141 82 27 chr5 86514924 86515028 -66022231 + B1_Mur4 SINE Alu 43 150 0 3 1245 618 131 0 0 chr5 86515034 86515133 -66022126 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 3 1245 519 258 104 15 chr5 86515210 86515344 -66021915 + B1_Mur3 SINE Alu 1 146 -3 3 1245 351 182 0 0 chr5 86515372 86515449 -66021810 + (CCAA)n Simple_repeat Simple_repeat 2 78 0 3 1245 317 159 15 45 chr5 86516687 86516753 -66020506 + ID_B1 SINE B4 78 141 -83 3 1245 443 67 17 0 chr5 86516697 86516757 -66020502 + B1_Mus1 SINE Alu 5 65 -83 4 1245 1059 54 6 14 chr5 86516752 86516925 -66020334 - B1_Mus2 SINE Alu 0 311 2 4 1245 786 59 0 0 chr5 86516925 86517023 -66020236 + B1_Mus2 SINE Alu 50 147 0 4 1245 6193 59 3 3 chr5 86517042 86517854 -66019405 - L1_Mus1 LINE L1 0 6567 5766 4 1245 575 230 7 49 chr5 86517927 86518069 -66019190 + B1_Mur4 SINE Alu 14 149 -1 4 1245 386 323 30 8 chr5 86518169 86518303 -66018956 + B1F SINE Alu 12 148 -1 4 1245 6050 44 0 0 chr5 86518447 86519180 -66018079 - L1Md_A LINE L1 0 6582 5850 4 1245 4865 14 0 0 chr5 86519180 86519748 -66017511 + L1_Mm LINE L1 3226 3793 -2090 4 1245 519 17 0 0 chr5 86520520 86520580 -66016679 + (TC)n Simple_repeat Simple_repeat 2 61 0 4 1245 523 191 8 0 chr5 86520582 86520708 -66016551 - Lx9 LINE L1 -18 7626 7500 4 1245 545 238 37 18 chr5 86520708 86520871 -66016388 - Lx9 LINE L1 -255 7389 7224 4 1245 411 21 0 0 chr5 86521584 86521632 -66015627 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 5 1245 181 319 14 14 chr5 86522216 86522289 -66014970 - MIRb SINE MIR -1 267 195 5 1245 292 207 8 8 chr5 86522329 86522446 -66014813 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 1245 232 154 39 0 chr5 86525645 86525697 -66011562 + A-rich Low_complexity Low_complexity 3 56 0 5 1245 3621 136 22 46 chr5 86526545 86526749 -66010510 + L1_Mus4 LINE L1 5266 5453 -430 5 1245 1057 29 0 92 chr5 86526749 86526902 -66010357 + B1_Mus1 SINE Alu 1 139 -9 5 1245 396 0 0 0 chr5 86526902 86526946 -66010313 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 5 1245 7458 94 27 10 chr5 86526946 86528105 -66009154 + L1_Mus4 LINE L1 5454 6630 -6 5 1245 366 271 141 34 chr5 86528696 86528845 -66008414 - MLT1H LTR MaLR -2 547 383 5 1245 346 265 105 97 chr5 86529012 86529100 -66008159 - L1MEf LINE L1 -2039 4107 4010 5 1245 195 42 0 0 chr5 86529100 86529124 -66008135 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1245 346 265 105 97 chr5 86529124 86529282 -66007977 - L1MEf LINE L1 -2137 4009 3860 5 1245 186 43 0 0 chr5 86529294 86529317 -66007942 + (CATA)n Simple_repeat Simple_repeat 2 24 0 6 1245 234 250 83 74 chr5 86529591 86529699 -66007560 - L1MEf LINE L1 -5422 820 712 5 1245 620 193 200 23 chr5 86529988 86530163 -66007096 - L1_Rod LINE L1 -129 5718 5513 6 1245 893 226 41 34 chr5 86530169 86530435 -66006824 - L1_Rod LINE L1 -677 5170 4903 6 1245 998 76 15 0 chr5 86530978 86531110 -66006149 + B1_Mus1 SINE Alu 2 135 -13 6 1245 4099 115 18 2 chr5 86531212 86531823 -66005436 - Lx LINE L1 0 6654 6034 6 1245 2154 115 9 3 chr5 86531833 86532156 -66005103 - L1_Mm LINE L1 -27 5856 5532 6 1245 1279 93 22 5 chr5 86533546 86533730 -66003529 + B2_Mm2 SINE B2 1 187 -8 6 1245 318 173 91 26 chr5 86533802 86533879 -66003380 + RLTR25B LTR ERVK 428 509 -519 6 1245 857 19 0 0 chr5 86533817 86533922 -66003337 + B1_Mm SINE Alu 43 147 0 6 1245 234 0 0 0 chr5 86533930 86533956 -66003303 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1245 996 70 0 0 chr5 86534487 86534616 -66002643 - B1_Mus1 SINE Alu -18 130 2 6 1245 703 167 280 0 chr5 86534826 86534994 -66002265 - B3 SINE B2 0 216 2 7 1245 354 281 176 19 chr5 86535861 86536071 -66001188 + L1ME3B LINE L1 2208 2450 -3696 7 1245 1403 183 84 38 chr5 86536074 86536430 -66000829 - ORR1C2 LTR MaLR -1 383 15 7 1245 246 300 73 62 chr5 86536772 86536868 -66000391 + L1MEg LINE L1 301 397 -5687 7 1245 653 249 5 42 chr5 86537209 86537398 -65999861 + B3A SINE B2 2 183 -15 7 1245 22 0 0 0 chr5 86537412 86537434 -65999825 + AT_rich Low_complexity Low_complexity 1 22 0 7 1245 291 307 80 7 chr5 86537865 86538144 -65999115 + L1ME3B LINE L1 5219 5520 -720 7 1245 616 243 171 39 chr5 86538393 86538774 -65998485 + L1ME3B LINE L1 5770 6200 -40 7 1245 824 237 46 21 chr5 86538813 86538998 -65998261 + B3 SINE B2 1 193 -23 7 1245 206 62 31 0 chr5 86538998 86539030 -65998229 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1245 216 0 0 0 chr5 86539246 86539270 -65997989 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1245 32 26 0 0 chr5 86540778 86540817 -65996442 + AT_rich Low_complexity Low_complexity 1 39 0 7 1245 391 335 6 45 chr5 86544240 86544418 -65992841 - L2a LINE L2 -32 3394 3224 8 1245 674 295 58 47 chr5 86544424 86544698 -65992561 + B4A SINE B4 9 285 -7 8 1245 3453 265 128 51 chr5 86544761 86545210 -65992049 + L1_Mur3 LINE L1 3154 3640 -2240 8 1245 345 47 0 0 chr5 86545210 86545253 -65992006 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1245 3453 265 128 51 chr5 86545253 86545542 -65991717 + L1_Mur3 LINE L1 3641 3948 -1932 8 1245 281 26 26 0 chr5 86545542 86545580 -65991679 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1245 225 0 0 0 chr5 86545580 86545604 -65991655 + (TA)n Simple_repeat Simple_repeat 2 26 0 8 1245 3453 265 128 51 chr5 86545604 86546133 -65991126 + L1_Mur3 LINE L1 3949 4585 -1295 8 1245 792 63 0 0 chr5 86546133 86546244 -65991015 + (GA)n Simple_repeat Simple_repeat 2 112 0 8 1245 429 20 0 0 chr5 86546247 86546297 -65990962 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 8 1245 3453 265 128 51 chr5 86546297 86546360 -65990899 + L1_Mur3 LINE L1 4586 4604 -1276 8 1245 240 86 0 0 chr5 86546360 86546395 -65990864 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 8 1245 3453 265 128 51 chr5 86546395 86546474 -65990785 + L1_Mur3 LINE L1 4605 4673 -1207 8 1245 315 0 0 0 chr5 86546474 86546509 -65990750 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 8 1245 3453 265 128 51 chr5 86546509 86546781 -65990478 + L1_Mur3 LINE L1 4674 4971 -909 8 1245 834 52 26 9 chr5 86546781 86546897 -65990362 - B2_Mm2 SINE B2 0 195 78 9 1245 278 284 68 0 chr5 86547286 86547360 -65989899 + MER44C DNA MER2_type 28 106 -627 9 1245 657 319 102 33 chr5 86547465 86547652 -65989607 + MER44C DNA MER2_type 113 311 -422 9 1245 1355 146 23 0 chr5 86547652 86547872 -65989387 + URR1B DNA MER1_type 1 225 0 9 1245 657 319 102 33 chr5 86547872 86547989 -65989270 + MER44C DNA MER2_type 312 438 -295 9 1245 569 90 11 0 chr5 86547991 86548090 -65989169 + B1_Mus2 SINE Alu 47 150 0 9 1245 34 79 0 0 chr5 86549831 86549907 -65987352 + AT_rich Low_complexity Low_complexity 1 76 0 9 1245 512 90 191 0 chr5 86549924 86550013 -65987246 - BC1_Mm scRNA scRNA -46 106 1 9 1245 21 0 0 0 chr5 86550352 86550373 -65986886 + AT_rich Low_complexity Low_complexity 1 21 0 9 1245 230 189 74 19 chr5 86551228 86551282 -65985977 + HAL1 LINE L1 791 847 -1660 9 1245 330 262 56 9 chr5 86551734 86551805 -65985454 + L1MEg LINE L1 1817 1892 -4192 9 1245 1197 61 0 0 chr5 86551805 86551953 -65985306 + B1_Mus1 SINE Alu 1 148 0 9 1245 330 262 56 9 chr5 86551953 86551989 -65985270 + L1MEg LINE L1 1893 1928 -4156 9 1245 297 347 41 85 chr5 86552434 86552705 -65984554 + B4 SINE B4 11 269 -23 1 1245 309 109 0 0 chr5 86552772 86552818 -65984441 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1245 1042 81 0 39 chr5 86553006 86553160 -65984099 + B1_Mus1 SINE Alu 1 148 0 1 1245 381 43 0 0 chr5 86555112 86555159 -65982100 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1245 214 369 23 35 chr5 86555836 86555923 -65981336 + B4A SINE B4 76 161 -131 1 1245 334 293 37 83 chr5 86555858 86555966 -65981293 + PB1D10 SINE Alu 14 116 -1 1 1245 287 333 44 0 chr5 86556515 86556605 -65980654 + B1F SINE Alu 1 94 -55 1 1245 23 33 0 0 chr5 86558166 86558196 -65979063 + AT_rich Low_complexity Low_complexity 1 30 0 1 1245 568 259 77 0 chr5 86558391 86558534 -65978725 + RSINE1 SINE B4 1 154 -11 1 1245 236 218 18 18 chr5 86559385 86559441 -65977818 - MIR SINE MIR -30 232 177 1 1245 1276 108 11 5 chr5 86559595 86559782 -65977477 - B2_Mm1t SINE B2 -4 189 2 1 1245 313 111 0 18 chr5 86559900 86559955 -65977304 + 4.5SRNA scRNA scRNA 33 86 -8 1 1245 851 37 0 0 chr5 86559906 86560013 -65977246 + B1_Mus2 SINE Alu 41 147 0 1 1245 192 77 0 0 chr5 86560013 86560039 -65977220 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1245 201 74 0 0 chr5 86560489 86560516 -65976743 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1245 746 190 201 27 chr5 86560574 86560758 -65976501 - B3 SINE B2 0 216 1 1 1245 1150 62 0 0 chr5 86560790 86560935 -65976324 - B1_Mus2 SINE Alu -2 145 1 1 1245 258 56 0 0 chr5 86561274 86561310 -65975949 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1245 1222 69 0 12 chr5 86562706 86562868 -65974391 + B2_Mm1t SINE B2 1 160 -33 1 1245 258 32 0 0 chr5 86562868 86562899 -65974360 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 1245 645 251 33 44 chr5 86563172 86563355 -65973904 + Lx5 LINE L1 6870 7050 0 1 1245 372 266 210 17 chr5 86563571 86563804 -65973455 + B4A SINE B4 1 278 -14 1 1245 209 204 0 0 chr5 86565097 86565146 -65972113 + A-rich Low_complexity Low_complexity 1 49 0 1 1245 22 88 0 0 chr5 86565701 86565758 -65971501 + AT_rich Low_complexity Low_complexity 1 57 0 1 1245 1177 54 0 0 chr5 86566179 86566327 -65970932 - B1_Mus1 SINE Alu 0 148 1 1 1245 447 234 45 1 chr5 86566329 86566432 -65970827 - B1_Mur1 SINE Alu -6 141 35 1 1245 209 57 29 0 chr5 86566530 86566565 -65970694 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1245 22 0 0 0 chr5 86567239 86567261 -65969998 + AT_rich Low_complexity Low_complexity 1 22 0 1 1245 533 284 49 43 chr5 86567270 86567432 -65969827 - RSINE1 SINE B4 0 165 3 1 1245 1647 31 0 0 chr5 86567617 86567809 -65969450 + B2_Mm1t SINE B2 2 193 0 1 1245 195 42 0 0 chr5 86567809 86567833 -65969426 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1245 272 256 46 77 chr5 86568048 86568243 -65969016 + RMER17A2 LTR ERVK 344 532 -374 1 1245 1185 55 0 0 chr5 86569035 86569181 -65968078 + B1_Mm SINE Alu 2 147 0 1 1245 246 246 0 0 chr5 86569752 86569813 -65967446 + A-rich Low_complexity Low_complexity 1 61 0 1 1245 1167 35 21 0 chr5 86570023 86570167 -65967092 + B1_Mus1 SINE Alu 2 148 0 1 1245 569 294 93 11 chr5 86570774 86570956 -65966303 - MER44B DNA MER2_type -353 197 1 1 1245 21 71 0 0 chr5 86570956 86570998 -65966261 + AT_rich Low_complexity Low_complexity 1 42 0 1 1245 29 0 0 0 chr5 86571721 86571750 -65965509 + AT_rich Low_complexity Low_complexity 1 29 0 1 1245 3132 56 0 10 chr5 86572008 86572408 -65964851 - MTA_Mm LTR MaLR 0 396 1 1 1245 1194 55 7 0 chr5 86572717 86572863 -65964396 - B1_Mus2 SINE Alu 0 147 1 1 1245 31 82 0 0 chr5 86573212 86573285 -65963974 + AT_rich Low_complexity Low_complexity 1 73 0 1 1245 212 114 27 54 chr5 86573810 86573884 -65963375 + (TTTG)n Simple_repeat Simple_repeat 1 72 0 1 1245 559 177 202 0 chr5 86573884 86574008 -65963251 - B1_Mur4 SINE Alu -1 149 1 1 1245 340 284 45 50 chr5 86574728 86574977 -65962282 + L1M3 LINE L1 3318 3564 -2579 1 1245 332 203 26 39 chr5 86575049 86575126 -65962133 + ID4_ SINE ID 3 78 -5 1 1245 192 27 0 75 chr5 86575151 86575191 -65962068 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1245 369 202 141 44 chr5 86575291 86575530 -65961729 + L1M3 LINE L1 5313 5573 -601 1 1245 572 257 28 7 chr5 86575538 86575679 -65961580 + B1_Mur1 SINE Alu 2 145 -4 1 1245 320 304 83 60 chr5 86575681 86575814 -65961445 + L1M3 LINE L1 5584 5719 -460 1 1245 205 210 32 0 chr5 86576693 86576755 -65960504 + GA-rich Low_complexity Low_complexity 5 68 0 1 1245 441 0 0 0 chr5 86576755 86576804 -65960455 + (CAG)n Simple_repeat Simple_repeat 2 50 0 1 1245 322 243 73 64 chr5 86577150 86577260 -65959999 + PB1D9 SINE Alu 3 113 -7 1 1245 203 179 0 25 chr5 86578953 86578993 -65958266 + CT-rich Low_complexity Low_complexity 2 40 0 1 1245 1491 63 5 0 chr5 86580049 86580239 -65957020 + B2_Mm1t SINE B2 1 191 -2 1 1245 377 222 226 47 chr5 86580446 86580831 -65956428 + L1_Mur3 LINE L1 5114 5566 -731 1 1245 22 0 0 0 chr5 86582477 86582499 -65954760 + AT_rich Low_complexity Low_complexity 1 22 0 1 1245 305 248 99 54 chr5 86583080 86583191 -65954068 - B1_Mur2 SINE Alu 0 149 34 1 1245 36 0 0 0 chr5 86583341 86583377 -65953882 + AT_rich Low_complexity Low_complexity 1 36 0 1 1245 294 269 175 36 chr5 86584172 86584338 -65952921 + LTR40c LTR ERVL 125 313 -152 1 1245 333 238 78 38 chr5 86584532 86584714 -65952545 - L1M2 LINE L1 -505 6488 6299 1 1245 341 243 277 50 chr5 86584789 86584856 -65952403 - L1M2 LINE L1 -3294 3551 3479 1 1245 668 291 88 5 chr5 86584856 86585060 -65952199 - ID_B1 SINE B4 -1 223 3 1 1245 341 243 277 50 chr5 86585060 86585223 -65952036 - L1M2 LINE L1 -3367 3478 3323 1 1245 236 292 144 91 chr5 86585223 86585355 -65951904 - B1F1 SINE Alu -10 139 1 1 1245 341 243 277 50 chr5 86585355 86585582 -65951677 - L1M2 LINE L1 -3523 3322 2989 1 1245 1017 110 28 161 chr5 86585636 86585853 -65951406 - B2_Mm1t SINE B2 -4 189 2 1 1245 240 250 125 77 chr5 86585930 86586034 -65951225 - B4A SINE B4 -113 179 71 1 1245 412 257 77 49 chr5 86586081 86586313 -65950946 - L1M2 LINE L1 -3837 3005 2764 1 1245 453 270 79 17 chr5 86586444 86586621 -65950638 - L1M2 LINE L1 -4159 2690 2503 1 1245 253 319 90 37 chr5 86586894 86587216 -65950043 - L1M2 LINE L1 -4632 2217 1879 1 1245 311 270 369 0 chr5 86587582 86587773 -65949486 - B4A SINE B4 -11 281 14 1 1245 183 205 0 0 chr5 86588690 86588729 -65948530 + (TATATG)n Simple_repeat Simple_repeat 5 43 0 1 1245 1122 79 0 0 chr5 86588922 86589062 -65948197 - B1_Mus2 SINE Alu -6 141 2 1 1245 254 312 80 35 chr5 86589927 86590126 -65947133 + L1MC5 LINE L1 5553 5760 -2122 1 1245 1714 5 0 0 chr5 86590631 86590829 -65946430 + L1Md_A LINE L1 6385 6582 0 1 1245 214 292 0 97 chr5 86590859 86590931 -65946328 + PB1D10 SINE Alu 48 112 -5 1 1245 22 80 0 0 chr5 86591134 86591184 -65946075 + AT_rich Low_complexity Low_complexity 1 50 0 1 1245 272 239 134 17 chr5 86591819 86591938 -65945321 + L1MC5 LINE L1 7248 7380 -581 1 1245 509 246 43 29 chr5 86591958 86592096 -65945163 - B1F2 SINE Alu 0 149 10 1 1245 298 190 146 49 chr5 86592115 86592259 -65945000 + L1MC5 LINE L1 7449 7606 -355 1 1245 634 308 126 61 chr5 86592389 86592731 -65944528 + MLT1F2 LTR MaLR 197 560 0 1 1245 655 206 56 14 chr5 86593364 86593507 -65943752 + B1_Mur2 SINE Alu 1 149 0 1 1245 25 65 0 0 chr5 86594515 86594561 -65942698 + AT_rich Low_complexity Low_complexity 1 46 0 1 1245 21 0 0 0 chr5 86594643 86594664 -65942595 + AT_rich Low_complexity Low_complexity 1 21 0 1 1245 933 235 20 29 chr5 86595081 86595326 -65941933 - Lx9 LINE L1 -140 7504 7262 1 1245 715 268 0 47 chr5 86595326 86595498 -65941761 - B3A SINE B2 -24 174 11 1 1245 187 422 23 8 chr5 86595648 86595777 -65941482 - L3 LINE CR1 -167 4322 4192 1 1245 686 227 154 16 chr5 86595939 86596127 -65941132 + B3 SINE B2 1 214 -2 1 1245 22 0 0 0 chr5 86596224 86596246 -65941013 + AT_rich Low_complexity Low_complexity 1 22 0 1 1245 1209 58 6 0 chr5 86596417 86596573 -65940686 + B2_Mm2 SINE B2 8 164 -31 1 1245 717 226 97 22 chr5 86596606 86596791 -65940468 + ID_B1 SINE B4 9 207 -17 1 1245 370 235 112 0 chr5 86597097 86597195 -65940064 + RSINE1 SINE B4 3 111 -54 1 1245 302 272 62 0 chr5 86597182 86597263 -65939996 - ORR1E LTR MaLR -273 86 1 1 1245 983 276 154 30 chr5 86597273 86597739 -65939520 - MTE-int LTR MaLR -123 1457 934 1 1245 633 273 74 11 chr5 86597750 86597939 -65939320 - ERVL-int LTR ERVL -4275 1482 1282 1 1245 508 316 62 56 chr5 86597962 86598123 -65939136 - RSINE1 SINE B4 -1 164 3 1 1245 3190 46 13 0 chr5 86598323 86598714 -65938545 + MTA_Mm LTR MaLR 1 396 0 1 1245 279 286 54 21 chr5 86598860 86598953 -65938306 - MTEa LTR MaLR 0 379 284 1 1245 265 310 74 97 chr5 86599004 86599179 -65938080 - MTEa LTR MaLR -194 180 10 1 1245 2838 72 5 3 chr5 86599757 86600146 -65937113 + MTB LTR MaLR 1 390 -10 1 1245 1196 34 0 0 chr5 86600147 86600294 -65936965 + B1_Mm SINE Alu 1 147 0 1 1245 251 349 0 35 chr5 86600715 86600801 -65936458 + B1F2 SINE Alu 1 83 -66 1 1245 309 151 0 0 chr5 86600813 86600866 -65936393 + (CAA)n Simple_repeat Simple_repeat 2 54 0 1 1245 209 204 0 0 chr5 86601528 86601572 -65935687 + (CTCG)n Simple_repeat Simple_repeat 3 46 0 1 1245 1045 57 14 41 chr5 86602445 86602591 -65934668 - B1_Mus2 SINE Alu -5 142 1 1 1245 408 188 94 0 chr5 86602706 86602802 -65934457 + URR1B DNA MER1_type 116 220 -5 1 1245 1108 112 148 51 chr5 86603028 86603264 -65933995 + Lx3B LINE L1 6715 6973 0 1 1245 21 57 0 0 chr5 86603264 86603299 -65933960 + AT_rich Low_complexity Low_complexity 1 35 0 1 1245 441 291 121 5 chr5 86603442 86603666 -65933593 - L1MD3 LINE L1 -15 7980 7731 1 1245 245 314 62 64 chr5 86604236 86604453 -65932806 + MLT1A LTR MaLR 1 266 -99 1 1245 616 223 141 37 chr5 86604608 86604799 -65932460 - B3 SINE B2 -4 212 2 1 1245 202 304 167 42 chr5 86605816 86605936 -65931323 - MER5A DNA MER1_type -44 145 11 2 1245 570 226 8 39 chr5 86606562 86606691 -65930568 + RSINE1 SINE B4 3 127 -38 2 1245 207 0 0 0 chr5 86606872 86606895 -65930364 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1245 1072 295 82 36 chr5 86607118 86607558 -65929701 + RMER5 LTR ERV1 70 529 -5 2 1245 1185 78 45 0 chr5 86607773 86607952 -65929307 + B2_Mm2 SINE B2 2 188 -7 2 1245 1199 87 6 6 chr5 86608029 86608202 -65929057 + RLTR11A LTR ERVK 284 456 -72 2 1245 315 0 0 0 chr5 86608212 86608247 -65929012 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 2 1245 1015 95 41 0 chr5 86608248 86608395 -65928864 - B2_Mm2 SINE B2 -37 158 6 2 1245 396 0 0 0 chr5 86608395 86608439 -65928820 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1245 454 141 0 0 chr5 86608439 86608510 -65928749 + RLTR11A LTR ERVK 458 528 0 2 1245 290 345 9 0 chr5 86608693 86608809 -65928450 - Charlie4a DNA MER1_type -27 481 365 2 1245 1524 138 166 17 chr5 86609173 86609528 -65927731 - RMER17C LTR ERVK -2 408 1 2 1245 232 303 191 0 chr5 86611600 86611689 -65925570 + PB1D10 SINE Alu 1 106 -11 2 1245 405 102 0 0 chr5 86612070 86612129 -65925130 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1245 235 0 0 54 chr5 86612676 86612713 -65924546 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1245 1165 44 0 0 chr5 86612713 86612850 -65924409 - B1_Mus2 SINE Alu -9 138 2 2 1245 2316 162 7 19 chr5 86613533 86613943 -65923316 - MTB_Mm LTR MaLR -2 405 1 2 1245 432 0 0 0 chr5 86614926 86614974 -65922285 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 2 1245 741 181 14 35 chr5 86614975 86615118 -65922141 - B1_Mur3 SINE Alu -6 143 4 2 1245 643 319 104 70 chr5 86616155 86616624 -65920635 + MLT2B3 LTR ERVL 1 485 -69 2 1245 1193 214 58 102 chr5 86616624 86616967 -65920292 + RLTR18B LTR ERVK 1 328 -184 2 1245 1775 28 0 0 chr5 86616968 86617179 -65920080 - MT2_Mm LTR ERVL -282 211 1 2 1245 302 0 0 0 chr5 86617179 86617217 -65920042 - MERVL-int LTR ERVL 0 5485 5448 2 1245 347 125 26 53 chr5 86617217 86617293 -65919966 - ORR1A3-int LTR MaLR -1323 640 567 2 1245 2906 28 0 0 chr5 86617293 86617650 -65919609 - MERVL-int LTR ERVL -114 5371 5015 2 1245 574 264 87 29 chr5 86617650 86617822 -65919437 + RLTR18B LTR ERVK 331 512 0 2 1245 449 296 117 71 chr5 86618180 86618416 -65918843 + L1MC4 LINE L1 6779 7014 -1028 2 1245 255 257 73 45 chr5 86618416 86618526 -65918733 + PB1D10 SINE Alu 5 117 0 2 1245 449 300 136 43 chr5 86618526 86619033 -65918226 + L1MC4 LINE L1 7015 7609 -433 2 1245 229 217 17 0 chr5 86619107 86619167 -65918092 + Lx7 LINE L1 7617 7677 -19 2 1245 238 314 9 0 chr5 86619208 86619313 -65917946 + L1MC4 LINE L1 7704 7809 -233 2 1245 1178 248 99 14 chr5 86619393 86619737 -65917522 + ORR1C2 LTR MaLR 1 373 -11 2 1245 26 0 0 0 chr5 86619849 86619875 -65917384 + AT_rich Low_complexity Low_complexity 1 26 0 2 1245 359 263 0 13 chr5 86619969 86620046 -65917213 + B3A SINE B2 85 160 -38 2 1245 216 0 0 0 chr5 86620064 86620088 -65917171 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1245 242 369 36 0 chr5 86621299 86621410 -65915849 + MIR SINE MIR 110 224 -38 2 1245 662 292 38 23 chr5 86622127 86622390 -65914869 + Lx9 LINE L1 7152 7418 -226 2 1245 591 60 0 0 chr5 86622393 86622477 -65914782 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1245 318 345 36 7 chr5 86622708 86622848 -65914411 + MIRb SINE MIR 95 238 -30 2 1245 264 363 11 0 chr5 86623750 86623841 -65913418 - PB1D10 SINE Alu -25 92 1 2 1245 216 328 30 0 chr5 86623858 86623925 -65913334 + ID4 SINE ID 13 81 -2 2 1245 576 300 112 0 chr5 86623869 86624029 -65913230 + ID_B1 SINE B4 27 204 -20 2 1245 241 224 0 0 chr5 86624242 86624300 -65912959 + L1MA7 LINE L1 6228 6285 -6 2 1245 21 36 0 0 chr5 86624423 86624451 -65912808 + AT_rich Low_complexity Low_complexity 1 28 0 2 1245 263 375 11 0 chr5 86624526 86624614 -65912645 - PB1D10 SINE Alu -23 94 6 2 1245 252 267 45 34 chr5 86625906 86625995 -65911264 + PB1D10 SINE Alu 18 107 -10 2 1245 278 256 241 14 chr5 86626070 86626243 -65911016 - MIRb SINE MIR -29 239 27 2 1245 1454 234 60 13 chr5 86627972 86628208 -65909051 - RMER5 LTR ERV1 -127 407 165 2 1245 696 74 0 0 chr5 86628208 86628303 -65908956 + (TG)n Simple_repeat Simple_repeat 2 96 0 2 1245 1454 234 60 13 chr5 86628303 86628452 -65908807 - RMER5 LTR ERV1 -370 164 5 2 1245 299 321 36 0 chr5 86628528 86628640 -65908619 + MER82 DNA MER2_type 1 116 -537 2 1245 267 368 0 0 chr5 86629581 86629695 -65907564 - RLTR4_MM-int LTR ERV1 -2012 5589 5476 2 1245 36217 42 2 7 chr5 86629698 86635518 -65901741 - L1Md_F2 LINE L1 -1 6581 814 2 1245 2381 44 6 284 chr5 86635518 86636056 -65901203 - RLTR10 LTR ERVK -2 388 1 2 1245 4821 66 0 68 chr5 86636056 86636253 -65901006 - L1Md_F2 LINE L1 -5911 813 620 2 1245 1283 61 6 6 chr5 86636499 86636658 -65900601 + B2_Mm1t SINE B2 1 160 -33 2 1245 458 57 0 14 chr5 86636658 86636729 -65900530 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 2 1245 1594 306 39 51 chr5 86636743 86638014 -65899245 - MuRRS4-int LTR ERV1 -2375 5231 3547 2 1245 450 321 55 44 chr5 86638025 86638499 -65898760 - MuRRS4-int LTR ERV1 -5146 2460 2014 2 155 591 318 66 30 chr5 86638513 86638983 -65898276 - MuRRS4-int LTR ERV1 -5715 2063 1577 2 1246 501 355 73 50 chr5 86639039 86639341 -65897918 + MER82 DNA MER2_type 280 588 -65 2 1246 360 111 0 0 chr5 86639601 86639655 -65897604 + (CAAG)n Simple_repeat Simple_repeat 2 55 0 2 1246 345 375 131 0 chr5 86640106 86640335 -65896924 - MIR SINE MIR -3 259 1 2 1246 1366 208 51 27 chr5 86640539 86640737 -65896522 - Lx5 LINE L1 -1091 5959 5744 2 1246 1833 78 4 0 chr5 86640737 86640979 -65896280 - L1_Mus1 LINE L1 -17 6550 6308 2 1246 1366 224 92 28 chr5 86640979 86641254 -65896005 - Lx5 LINE L1 -137 5743 5455 2 1246 2861 42 0 0 chr5 86641254 86641586 -65895673 + IAPEY3_LTR LTR ERVK 1 332 0 2 1246 55349 61 9 6 chr5 86641586 86648966 -65888293 + IAPEY3-int LTR ERVK 1 7376 -304 2 1246 6175 75 8 18 chr5 86648966 86649852 -65887407 - RLTR13A3 LTR ERVK 0 978 1 2 1246 1990 47 8 0 chr5 86649852 86650106 -65887153 + IAPEY3-int LTR ERVK 7425 7680 0 2 1246 2676 44 34 0 chr5 86650106 86650427 -65886832 + IAPEY3_LTR LTR ERVK 1 332 0 2 1246 1779 145 27 22 chr5 86650429 86650796 -65886463 - Lx5 LINE L1 -422 5458 5090 2 1246 1116 201 4 24 chr5 86650784 86651034 -65886225 + Lx5 LINE L1 4817 5061 -816 2 1246 4934 96 18 1 chr5 86651538 86652297 -65884962 - MusHAL1 LINE L1 -2570 784 13 2 1246 2428 115 29 3 chr5 86652360 86652735 -65884524 + Lx LINE L1 6268 6652 -2 2 1246 514 256 81 54 chr5 86653221 86653407 -65883852 - MIR SINE MIR -28 234 44 2 1246 2650 153 128 13 chr5 86653571 86654094 -65883165 - RMER4B LTR ERVK -2 583 1 2 1246 740 230 0 0 chr5 86654094 86654233 -65883026 + B1_Mur2 SINE Alu 5 143 -6 2 1246 21 0 0 0 chr5 86654327 86654348 -65882911 + AT_rich Low_complexity Low_complexity 1 21 0 2 1246 518 293 62 41 chr5 86654381 86654527 -65882732 + RSINE1 SINE B4 13 161 -4 2 1246 464 252 0 83 chr5 86654568 86654689 -65882570 + RMER5 LTR ERV1 222 332 -202 2 1246 35 54 0 0 chr5 86655347 86655403 -65881856 + AT_rich Low_complexity Low_complexity 1 56 0 2 1246 820 297 95 42 chr5 86655547 86655948 -65881311 + RMER5 LTR ERV1 113 534 0 2 1246 1910 35 4 0 chr5 86656876 86657108 -65880151 + L1Md_A LINE L1 6350 6582 0 2 1246 279 242 32 0 chr5 86657609 86657671 -65879588 - B3 SINE B2 -7 209 146 2 1246 357 291 167 14 chr5 86657672 86657757 -65879502 - L1M3 LINE L1 -541 5630 5531 2 1246 1335 91 0 16 chr5 86657757 86657947 -65879312 - B2_Mm2 SINE B2 -8 187 1 2 1246 656 261 83 49 chr5 86657947 86658446 -65878813 - L1M3 LINE L1 -641 5530 4995 2 1246 25 75 0 0 chr5 86659126 86659179 -65878080 + AT_rich Low_complexity Low_complexity 1 53 0 2 1246 1035 42 91 7 chr5 86659361 86659504 -65877755 + L1Md_F2 LINE L1 6416 6570 -12 2 1246 239 421 48 0 chr5 86659547 86659673 -65877586 + MIR SINE MIR 17 148 -114 2 1246 342 45 0 0 chr5 86661026 86661070 -65876189 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 2 1246 756 220 55 119 chr5 86661606 86661807 -65875452 - B3A SINE B2 -7 188 1 2 1246 244 279 104 20 chr5 86661915 86662102 -65875157 - L1M3 LINE L1 -571 5597 5395 2 1246 3648 45 0 0 chr5 86662102 86662543 -65874716 + L1_Mus1 LINE L1 6126 6566 -1 2 1246 244 279 104 20 chr5 86662543 86662556 -65874703 - L1M3 LINE L1 -774 5394 5381 2 1246 570 326 88 25 chr5 86662588 86662668 -65874591 - B4A SINE B4 0 292 219 2 1246 378 0 0 0 chr5 86662668 86662710 -65874549 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1246 570 326 88 25 chr5 86662710 86662903 -65874356 - B4A SINE B4 -74 218 4 2 1246 270 81 0 0 chr5 86664647 86664684 -65872575 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1246 520 268 18 43 chr5 86664695 86664859 -65872400 - RSINE1 SINE B4 -3 162 3 2 1246 6506 49 2 0 chr5 86665079 86665879 -65871380 - L1Md_F2 LINE L1 -12 6570 5769 2 1246 936 37 0 0 chr5 86665879 86665986 -65871273 - U6 snRNA snRNA 0 107 1 2 1246 567 0 0 0 chr5 86666346 86666409 -65870850 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 2 1246 195 42 0 0 chr5 86667010 86667034 -65870225 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 2 1246 537 258 45 30 chr5 86667035 86667167 -65870092 - B1_Mur1 SINE Alu -8 141 8 2 1246 223 364 39 48 chr5 86667074 86667178 -65870081 - B4A SINE B4 -108 184 82 2 1246 241 325 130 9 chr5 86667280 86667395 -65869864 + B1F1 SINE Alu 14 142 -7 2 1246 320 226 0 0 chr5 86667754 86667816 -65869443 + ID4_ SINE ID 14 75 -8 2 1246 385 344 53 0 chr5 86667864 86667878 -65869381 + ID_B1 SINE B4 68 137 -87 2 1246 388 311 28 0 chr5 86667878 86667984 -65869275 + B1F SINE Alu 5 113 -36 2 1246 385 344 53 0 chr5 86667984 86667995 -65869264 + ID_B1 SINE B4 138 205 -19 2 1246 397 297 141 31 chr5 86667989 86668152 -65869107 + MER20 DNA MER1_type 17 197 -22 2 1246 440 314 28 44 chr5 86669428 86669608 -65867651 + MER20 DNA MER1_type 42 218 -1 2 1246 1116 83 0 0 chr5 86671153 86671298 -65865961 - B1_Mus2 SINE Alu 0 147 3 2 1246 188 341 60 60 chr5 86671419 86671553 -65865706 - MIRb SINE MIR -134 134 1 2 1246 1298 101 140 9 chr5 86671615 86671844 -65865415 + Lx3A LINE L1 6715 6973 -8 2 1246 24 67 0 0 chr5 86672040 86672085 -65865174 + AT_rich Low_complexity Low_complexity 1 45 0 2 1246 28 0 0 0 chr5 86672160 86672188 -65865071 + AT_rich Low_complexity Low_complexity 1 28 0 2 1246 572 0 15 0 chr5 86672597 86672665 -65864594 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1246 606 292 65 10 chr5 86672678 86672959 -65864300 - L1MA4 LINE L1 -370 5930 5590 2 1246 258 81 0 0 chr5 86672991 86673028 -65864231 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1246 269 296 102 0 chr5 86674203 86674291 -65862968 + PB1D7 SINE Alu 3 99 -21 3 1246 512 186 42 50 chr5 86674706 86674825 -65862434 + B1_Mur1 SINE Alu 3 120 -29 3 1246 1119 75 0 0 chr5 86674830 86674976 -65862283 + B1_Mus1 SINE Alu 3 148 0 3 1246 592 115 0 19 chr5 86675020 86675126 -65862133 + (GGA)n Simple_repeat Simple_repeat 3 106 0 3 1246 516 32 0 0 chr5 86675222 86675284 -65861975 + (CAAG)n Simple_repeat Simple_repeat 2 63 0 3 1246 48 32 0 0 chr5 86675439 86675501 -65861758 + AT_rich Low_complexity Low_complexity 1 62 0 3 1246 24 77 0 0 chr5 86676859 86676911 -65860348 + AT_rich Low_complexity Low_complexity 1 52 0 3 1246 1050 118 0 0 chr5 86677094 86677255 -65860004 + (GAA)n Simple_repeat Simple_repeat 2 162 0 3 1246 21 57 0 0 chr5 86677981 86678016 -65859243 + AT_rich Low_complexity Low_complexity 1 35 0 3 1246 180 111 0 0 chr5 86678328 86678355 -65858904 + (TTA)n Simple_repeat Simple_repeat 1 27 0 3 1246 786 204 0 14 chr5 86678356 86678500 -65858759 - B1_Mus2 SINE Alu -1 146 5 3 1246 401 0 20 0 chr5 86678837 86678886 -65858373 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1246 241 313 140 10 chr5 86678924 86679024 -65858235 + MLT1A0 LTR MaLR 174 286 -79 3 1246 7634 46 25 4 chr5 86679520 86680476 -65856783 + L1Md_F2 LINE L1 5607 6582 0 3 1246 523 301 116 44 chr5 86680953 86681273 -65855986 - MLT1C LTR MaLR -54 413 71 3 1246 252 0 0 0 chr5 86681292 86681320 -65855939 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1246 1017 182 68 0 chr5 86681486 86681678 -65855581 + RLTR18B LTR ERVK 1 205 -307 3 1246 1351 272 31 44 chr5 86681683 86682067 -65855192 + RLTR18B LTR ERVK 123 501 -11 3 1246 201 74 0 0 chr5 86682328 86682355 -65854904 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 3 1246 467 340 34 0 chr5 86682394 86682541 -65854718 - RSINE1 SINE B4 -12 153 2 3 1246 825 65 0 0 chr5 86682568 86682676 -65854583 + (TTTC)n Simple_repeat Simple_repeat 1 108 0 3 1246 1522 241 46 29 chr5 86682689 86683039 -65854220 + MTD LTR MaLR 51 406 -13 3 1246 424 294 39 91 chr5 86683177 86683409 -65853850 - MIR SINE MIR -32 230 11 3 1246 2371 73 18 105 chr5 86683409 86683809 -65853450 - L1Md_F2 LINE L1 -12 6570 6206 3 1246 875 190 103 0 chr5 86688545 86688740 -65848519 - B3 SINE B2 0 216 2 3 1246 21 0 0 0 chr5 86689313 86689334 -65847925 + AT_rich Low_complexity Low_complexity 1 21 0 3 1246 513 121 0 0 chr5 86689375 86689458 -65847801 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 1246 2475 301 74 69 chr5 86689597 86689965 -65847294 + Lx9 LINE L1 6059 6587 -1057 3 1246 2725 61 30 3 chr5 86689965 86690327 -65846932 + L1_Mus1 LINE L1 6195 6566 -1 3 1246 2475 295 65 75 chr5 86690327 86691399 -65845860 + Lx9 LINE L1 6588 7643 -1 3 1246 267 185 0 36 chr5 86692078 86692134 -65845125 + B1F2 SINE Alu 1 54 -95 3 1246 777 311 14 93 chr5 86692105 86692459 -65844800 + MTE2a LTR MaLR 34 359 -20 3 1246 22635 106 12 3 chr5 86693115 86697337 -65839922 - L1_Mus3 LINE L1 -6 6632 2371 3 1246 214 172 47 0 chr5 86697877 86697941 -65839318 + (CATA)n Simple_repeat Simple_repeat 2 68 0 3 1246 268 148 55 33 chr5 86697973 86698064 -65839195 + (TA)n Simple_repeat Simple_repeat 1 93 0 3 1246 1362 168 0 5 chr5 86698429 86698650 -65838609 + URR1A DNA MER1_type 5 224 -2 3 1246 434 337 12 12 chr5 86698764 86698935 -65838324 + Lx7 LINE L1 6639 6809 -887 3 1246 1128 81 0 7 chr5 86699272 86699421 -65837838 - B1_Mus1 SINE Alu 0 148 1 3 1246 242 277 0 0 chr5 86699524 86699589 -65837670 - L1MA5 LINE L1 -364 5936 5872 3 1246 422 79 16 0 chr5 86701325 86701388 -65835871 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1246 385 281 0 33 chr5 86701441 86701533 -65835726 - B4A SINE B4 -202 90 2 3 1246 360 64 0 0 chr5 86701576 86701623 -65835636 + (CAGT)n Simple_repeat Simple_repeat 4 50 0 3 1246 943 233 36 0 chr5 86702001 86702194 -65835065 - B3 SINE B2 -11 205 6 3 1246 1245 89 0 6 chr5 86702296 86702465 -65834794 - B2_Mm2 SINE B2 -27 168 1 3 1246 369 93 0 0 chr5 86702481 86702535 -65834724 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1246 481 296 28 0 chr5 86702544 86702686 -65834573 - RSINE1 SINE B4 -17 148 3 3 1246 314 360 7 41 chr5 86704102 86704247 -65833012 + MLT1J LTR MaLR 233 372 -140 3 1246 220 291 0 0 chr5 86704333 86704388 -65832871 - MER5B DNA MER1_type -6 172 118 3 1246 228 213 242 8 chr5 86704473 86704601 -65832658 - L1MA6 LINE L1 -1 6299 6142 3 1246 1639 264 104 33 chr5 86704639 86705023 -65832236 + Lx8 LINE L1 6850 7270 -203 3 1246 889 151 215 0 chr5 86705023 86705209 -65832050 + URR1A DNA MER1_type 1 226 0 3 1246 1639 264 104 33 chr5 86705209 86705401 -65831858 + Lx8 LINE L1 7271 7467 -6 3 1246 257 287 10 21 chr5 86705411 86705507 -65831752 - L1MA6 LINE L1 -168 6132 6038 3 1246 241 286 95 0 chr5 86705591 86705654 -65831605 - ID4_ SINE ID -13 70 2 3 1246 337 280 139 7 chr5 86705754 86705905 -65831354 + MER58B DNA MER1_type 45 215 -126 3 1246 21 0 0 0 chr5 86705933 86705954 -65831305 + AT_rich Low_complexity Low_complexity 1 21 0 3 1246 1195 61 0 0 chr5 86705954 86706101 -65831158 - B1_Mus2 SINE Alu 0 147 1 3 1246 267 296 296 0 chr5 86706272 86706387 -65830872 + B3 SINE B2 48 196 -20 3 1246 360 0 0 0 chr5 86706389 86706429 -65830830 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1246 662 237 5 45 chr5 86707044 86707243 -65830016 - B3A SINE B2 -4 194 4 3 1246 301 350 92 63 chr5 86707264 86707535 -65829724 - LTR78 LTR ERV1 -906 398 120 3 1246 23 0 0 0 chr5 86708527 86708550 -65828709 + AT_rich Low_complexity Low_complexity 1 23 0 3 1246 561 258 123 53 chr5 86708560 86708900 -65828359 + L1MA5 LINE L1 5896 6259 -41 3 1246 333 0 0 0 chr5 86708902 86708939 -65828320 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 1246 606 14 0 0 chr5 86708939 86709009 -65828250 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1246 7558 82 3 4 chr5 86709265 86710288 -65826971 + L1_Mus4 LINE L1 5611 6632 -4 3 1246 1195 46 23 6 chr5 86710290 86710466 -65826793 + (GAA)n Simple_repeat Simple_repeat 2 180 0 3 1246 312 27 0 0 chr5 86710467 86710504 -65826755 + (GGA)n Simple_repeat Simple_repeat 3 39 0 3 1246 312 70 0 0 chr5 86710677 86710720 -65826539 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 3 1246 572 311 213 40 chr5 86711391 86712759 -65824500 - L2a LINE L2 -2 3424 1828 3 1246 3177 55 0 2 chr5 86713096 86713494 -65823765 + L1_Mus1 LINE L1 6171 6567 0 3 1246 706 291 114 15 chr5 86713701 86714026 -65823233 - L1MD1 LINE L1 -15 6227 5871 3 1246 389 300 173 14 chr5 86714392 86714612 -65822647 - B4 SINE B4 -27 265 11 3 1246 21 36 0 0 chr5 86714714 86714742 -65822517 + AT_rich Low_complexity Low_complexity 1 28 0 3 1246 695 332 92 11 chr5 86714930 86715289 -65821970 - MLT1B LTR MaLR -2 388 1 3 1246 21 0 0 0 chr5 86715356 86715377 -65821882 + AT_rich Low_complexity Low_complexity 1 21 0 3 1246 1401 12 0 0 chr5 86715848 86716013 -65821246 - L1Md_A LINE L1 0 6582 6418 3 1246 22 0 0 0 chr5 86718429 86718451 -65818808 + AT_rich Low_complexity Low_complexity 1 22 0 3 1246 325 261 140 11 chr5 86719106 86719199 -65818060 - PB1D10 SINE Alu -11 106 2 3 1246 510 293 80 0 chr5 86719781 86719931 -65817328 - RSINE1 SINE B4 0 165 4 3 1246 274 362 70 35 chr5 86720059 86720202 -65817057 + MIRc SINE MIR 17 164 -104 3 1246 701 204 7 42 chr5 86720698 86720841 -65816418 - B1_Mm SINE Alu -9 138 1 3 1246 8003 59 7 5 chr5 86720851 86722587 -65814672 - L1Md_F2 LINE L1 0 6582 4844 3 1246 227 268 188 14 chr5 86722615 86722838 -65814421 - L1M4c LINE L1 -1744 5098 4837 3 1246 2729 119 53 2 chr5 86722845 86723257 -65814002 + RLTR10C LTR ERVK 1 433 -3 3 1246 2273 128 5 22 chr5 86723296 86723665 -65813594 - Lx2 LINE L1 0 6997 6635 3 1246 345 290 114 44 chr5 86723665 86724026 -65813233 - L1M4c LINE L1 -2486 4359 3974 3 1246 608 199 73 7 chr5 86724036 86724173 -65813086 - B1_Mur2 SINE Alu -2 147 2 3 1246 254 227 70 25 chr5 86724183 86724341 -65812918 - L1_Mur3 LINE L1 -2628 3252 3088 3 1246 717 285 92 8 chr5 86724566 86724828 -65812431 + B4A SINE B4 3 286 -6 3 1246 345 24 0 0 chr5 86724897 86724939 -65812320 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1246 1900 214 82 11 chr5 86725019 86725472 -65811787 - Lx2B LINE L1 -2 6998 6514 3 1246 2043 186 0 10 chr5 86725476 86725866 -65811393 + Lx2B LINE L1 5587 5972 -1028 3 1246 538 299 119 15 chr5 86725916 86726310 -65810949 - L1M4c LINE L1 -3386 3459 3025 3 1246 7138 58 0 1 chr5 86726357 86727257 -65810002 - L1Md_F2 LINE L1 -4 6578 5680 3 1246 245 294 65 46 chr5 86727293 86727553 -65809706 - L1M4c LINE L1 -3945 2904 2640 3 1246 312 374 27 32 chr5 86727559 86727744 -65809515 - L1M4c LINE L1 -4627 2223 2040 3 1246 1199 180 18 73 chr5 86727918 86728248 -65809011 - Lx7 LINE L1 0 7696 7385 3 1246 605 140 7 0 chr5 86728248 86728384 -65808875 + (TCTG)n Simple_repeat Simple_repeat 2 138 0 3 1246 2780 213 118 37 chr5 86728386 86729107 -65808152 - Lx7 LINE L1 -321 7375 6597 3 1246 431 160 0 11 chr5 86729486 86729581 -65807678 + (TG)n Simple_repeat Simple_repeat 2 95 0 3 1246 608 327 41 68 chr5 86729615 86729910 -65807349 - B4 SINE B4 -4 288 2 3 1246 27 0 0 0 chr5 86729912 86729939 -65807320 + AT_rich Low_complexity Low_complexity 1 27 0 3 1246 1115 88 0 0 chr5 86731568 86731715 -65805544 - B1_Mus2 SINE Alu 0 147 1 3 1246 220 305 0 0 chr5 86731780 86731885 -65805374 + GA-rich Low_complexity Low_complexity 2 106 0 3 1246 239 72 0 23 chr5 86732888 86732931 -65804328 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 3 1246 216 352 166 18 chr5 86733126 86733343 -65803916 + L2b LINE L2 3127 3375 0 3 1246 343 325 190 15 chr5 86733588 86733788 -65803471 + MIR SINE MIR 28 262 0 4 1246 1157 89 0 0 chr5 86734460 86734606 -65802653 - B1_Mus2 SINE Alu 0 147 2 4 1246 269 308 27 27 chr5 86734779 86734926 -65802333 - L1MA7 LINE L1 -29 6262 6116 4 1246 589 62 0 24 chr5 86734940 86735022 -65802237 - B1_Mus2 SINE Alu 0 147 68 4 1246 228 174 0 0 chr5 86735022 86735068 -65802191 - L1MA7 LINE L1 -171 6120 6075 4 1246 694 252 0 26 chr5 86735682 86735833 -65801426 + ID_B1 SINE B4 78 224 0 4 1246 2669 55 30 32 chr5 86735844 86736217 -65801042 + L1Md_F2 LINE L1 6200 6571 -11 4 1246 229 48 23 45 chr5 86736227 86736271 -65800988 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1246 4028 65 0 0 chr5 86736411 86736919 -65800340 - L1Md_F2 LINE L1 -250 6332 5825 4 1246 1802 183 96 73 chr5 86737403 86737893 -65799366 + RLTR28 LTR ERVL 1 501 -23 4 1246 424 328 130 0 chr5 86738080 86738211 -65799048 + B1F2 SINE Alu 2 149 0 4 1246 207 272 11 32 chr5 86739051 86739146 -65798113 + (TA)n Simple_repeat Simple_repeat 1 93 0 4 1246 3708 43 59 0 chr5 86739310 86739771 -65797488 + L1Md_T LINE L1 6094 6581 -1 4 1246 434 280 20 0 chr5 86739856 86739956 -65797303 - ID_B1 SINE B4 -8 216 115 4 1246 2948 182 29 9 chr5 86740691 86741240 -65796019 + L1_Mur2 LINE L1 537 1096 -5990 4 1246 207 0 0 0 chr5 86741254 86741277 -65795982 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1246 981 47 0 0 chr5 86741277 86741403 -65795856 + (GA)n Simple_repeat Simple_repeat 2 128 0 4 1246 1763 136 0 51 chr5 86741410 86741525 -65795734 + L1_Mur2 LINE L1 1277 1384 -4493 4 1246 243 0 0 0 chr5 86741525 86741552 -65795707 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 4 1246 1180 28 0 0 chr5 86741559 86741700 -65795559 - B1_Mus1 SINE Alu -7 141 1 4 1246 1763 136 0 51 chr5 86741700 86741909 -65795350 + L1_Mur2 LINE L1 1385 1592 -4285 4 1246 29175 105 24 13 chr5 86741909 86746933 -65790326 + L1_Mus1 LINE L1 180 5299 -584 4 1246 1060 109 0 0 chr5 86746933 86747080 -65790179 + B1_Mm SINE Alu 1 147 0 4 1246 29175 91 9 14 chr5 86747080 86747297 -65789962 + L1_Mus1 LINE L1 5300 5475 -408 4 1246 2436 133 38 40 chr5 86747297 86747773 -65789486 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1246 7793 63 9 0 chr5 86747773 86748861 -65788398 + L1_Mus1 LINE L1 5470 6567 0 4 1246 3682 117 19 25 chr5 86748867 86749354 -65787905 + Lx4A LINE L1 1578 2060 -3817 4 1246 333 0 0 0 chr5 86749354 86749391 -65787868 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1246 3682 117 19 25 chr5 86749391 86749537 -65787722 + Lx4A LINE L1 2061 2207 -3670 4 1246 410 95 0 0 chr5 86749536 86749599 -65787660 - L1_Mur2 LINE L1 -3988 1889 1827 4 1246 301 163 39 39 chr5 86749599 86749701 -65787558 + CT-rich Low_complexity Low_complexity 4 105 0 4 1246 699 95 0 19 chr5 86749712 86749819 -65787440 - L1_Mur2 LINE L1 -4048 1829 1725 4 1246 2191 136 0 47 chr5 86749818 86750220 -65787039 + Lx4A LINE L1 2214 2596 -3281 4 1246 7668 140 52 19 chr5 86750213 86752139 -65785120 + Lx4A LINE L1 5046 7056 -2 4 1246 1078 171 42 5 chr5 86753712 86753924 -65783335 - Lx5 LINE L1 0 7050 6831 4 1246 2085 62 0 11 chr5 86753917 86754193 -65783066 + L1Md_F2 LINE L1 6299 6571 -11 4 1246 723 90 0 9 chr5 86754265 86754377 -65782882 + RLTR31A_Mm LTR ERVK 187 297 -287 4 1246 28 61 0 0 chr5 86754756 86754805 -65782454 + AT_rich Low_complexity Low_complexity 1 49 0 4 1246 732 250 88 44 chr5 86754808 86755013 -65782246 - B3 SINE B2 0 216 3 4 1246 23 54 0 0 chr5 86756037 86756074 -65781185 + AT_rich Low_complexity Low_complexity 1 37 0 4 1246 28 29 0 0 chr5 86756602 86756637 -65780622 + AT_rich Low_complexity Low_complexity 1 35 0 4 1246 229 292 50 50 chr5 86756787 86756906 -65780353 - MER5A DNA MER1_type -32 157 39 4 1246 241 264 42 0 chr5 86758309 86758381 -65778878 - BC1_Mm scRNA scRNA -63 89 15 4 1246 1158 122 0 0 chr5 86758447 86758627 -65778632 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 4 1246 551 198 0 19 chr5 86758826 86758972 -65778287 - URR1B DNA MER1_type 0 225 8 4 1246 262 389 74 79 chr5 86758955 86759170 -65778089 + MamRep38 DNA hAT 66 279 -16 4 1246 577 227 14 34 chr5 86759369 86759515 -65777744 + L1M2 LINE L1 5548 5690 -601 4 1246 21 0 0 0 chr5 86760768 86760789 -65776470 + AT_rich Low_complexity Low_complexity 1 21 0 4 1246 2121 199 24 3 chr5 86761353 86761736 -65775523 + MTC LTR MaLR 1 391 -30 4 1246 1275 89 0 0 chr5 86761745 86761924 -65775335 + (TTCTC)n Simple_repeat Simple_repeat 2 180 0 4 1246 513 0 0 0 chr5 86761940 86761997 -65775262 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 4 1246 535 246 8 0 chr5 86762836 86762954 -65774305 + PB1D7 SINE Alu 1 119 -1 4 1246 189 0 0 0 chr5 86763107 86763128 -65774131 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1246 1234 34 0 0 chr5 86763128 86763275 -65773984 - B1_Mm SINE Alu 0 147 1 4 1246 563 343 54 30 chr5 86763804 86764099 -65773160 + MER74A LTR ERVL 1 302 -256 4 1246 1069 102 0 0 chr5 86764543 86764690 -65772569 + B1_Mus1 SINE Alu 2 148 0 4 1246 233 381 12 24 chr5 86764738 86764902 -65772357 - L2 LINE L2 -815 2604 2443 4 1246 216 339 142 16 chr5 86765102 86765285 -65771974 - L2 LINE L2 -1229 2190 1985 4 1246 194 196 0 35 chr5 86767548 86767606 -65769653 + (TATG)n Simple_repeat Simple_repeat 4 59 0 4 1246 398 241 42 49 chr5 86767624 86767768 -65769491 + Lx6 LINE L1 7317 7459 -1 4 1246 24 53 0 0 chr5 86768261 86768299 -65768960 + AT_rich Low_complexity Low_complexity 1 38 0 4 1246 533 285 7 27 chr5 86768913 86769061 -65768198 - B1_Mur1 SINE Alu 0 149 5 4 1246 850 181 101 10 chr5 86769322 86769529 -65767730 - URR1A DNA MER1_type 0 226 1 4 1247 208 214 197 14 chr5 86769761 86769832 -65767427 + MIRb SINE MIR 133 216 -52 4 1247 231 125 0 0 chr5 86770482 86770522 -65766737 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1247 847 237 100 20 chr5 86770873 86770909 -65766350 - Lx6 LINE L1 -671 6789 6753 4 1247 450 0 0 0 chr5 86770909 86770959 -65766300 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1247 847 237 100 20 chr5 86770959 86771172 -65766087 - Lx6 LINE L1 -708 6752 6521 4 1247 222 37 0 0 chr5 86771185 86771212 -65766047 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1247 1233 237 33 13 chr5 86771218 86771517 -65765742 + Lx6 LINE L1 7130 7434 -26 4 1247 9224 79 17 8 chr5 86771517 86772787 -65764472 + Lx3A LINE L1 5693 6974 -7 4 1247 188 186 0 17 chr5 86772807 86772867 -65764392 + A-rich Low_complexity Low_complexity 2 60 0 4 1247 362 233 112 58 chr5 86774726 86774896 -65762363 + MLT1A0 LTR MaLR 184 376 -14 4 1247 314 310 117 69 chr5 86774944 86775563 -65761696 - L2a LINE L2 -176 3250 2602 4 1247 3587 57 0 0 chr5 86775647 86776084 -65761175 - L1_Mus1 LINE L1 0 6567 6131 4 1247 361 264 251 0 chr5 86776745 86776912 -65760347 - MIRb SINE MIR -10 258 50 4 1247 360 0 0 0 chr5 86777991 86778031 -65759228 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1247 740 314 43 15 chr5 86778426 86778710 -65758549 - B4A SINE B4 0 292 2 4 1247 208 154 77 0 chr5 86779475 86779514 -65757745 + polypurine Low_complexity Low_complexity 3 44 0 4 1247 1155 82 0 0 chr5 86780586 86780732 -65756527 - B1_Mus2 SINE Alu 0 147 2 4 1247 237 83 0 0 chr5 86780733 86780769 -65756490 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1247 1270 40 24 12 chr5 86781010 86781260 -65755999 + (TCTA)n Simple_repeat Simple_repeat 1 253 0 4 1247 449 338 83 32 chr5 86781781 86782059 -65755200 - B4A SINE B4 0 292 1 4 1247 503 78 44 0 chr5 86782358 86782448 -65754811 + (TA)n Simple_repeat Simple_repeat 1 94 0 4 1247 25 65 0 0 chr5 86782448 86782494 -65754765 + AT_rich Low_complexity Low_complexity 1 46 0 4 1247 362 158 37 0 chr5 86782641 86782723 -65754536 - L1_Mm LINE L1 -2534 3349 3265 4 1247 7657 77 0 4 chr5 86782721 86784248 -65753011 + L1_Mus2 LINE L1 5047 6566 0 4 1247 250 230 100 33 chr5 86784283 86784373 -65752886 + L1MB8 LINE L1 6033 6128 -50 4 1247 975 74 72 22 chr5 86785155 86785293 -65751966 - B1_Mus1 SINE Alu -1 147 3 4 1247 260 239 134 0 chr5 86785329 86785396 -65751863 - MER5A1 DNA MER1_type -5 161 86 4 1247 196 281 0 50 chr5 86786930 86786990 -65750269 + L2b LINE L2 3225 3281 -94 4 1247 260 271 151 17 chr5 86787039 86787236 -65750023 + MIRb SINE MIR 55 260 -2 4 1247 300 292 85 0 chr5 86787554 86787660 -65749599 + MIRb SINE MIR 88 202 -66 4 1247 965 117 40 34 chr5 86787803 86787980 -65749279 - B2_Mm2 SINE B2 -16 179 2 4 1247 1202 48 0 0 chr5 86790002 86790149 -65747110 + B1_Mm SINE Alu 1 147 0 4 1247 273 179 0 0 chr5 86790150 86790234 -65747025 + A-rich Low_complexity Low_complexity 1 84 0 4 1247 1572 239 42 17 chr5 86791356 86791764 -65745495 + Lx7 LINE L1 6904 7321 -375 4 1247 207 100 0 0 chr5 86791844 86791874 -65745385 + (GA)n Simple_repeat Simple_repeat 2 31 0 4 1247 37999 30 0 0 chr5 86791948 86798585 -65738674 - L1Md_T LINE L1 0 6585 1 4 1247 277 282 19 39 chr5 86798653 86798808 -65738451 - L1MA6 LINE L1 -2 6298 6147 4 1247 3654 45 0 0 chr5 86799004 86799449 -65737810 - L1Md_F2 LINE L1 -472 6110 5666 4 1247 3513 62 9 7 chr5 86799450 86799908 -65737351 + L1Md_F2 LINE L1 6110 6568 -14 4 1247 612 0 0 0 chr5 86802848 86802916 -65734343 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1247 284 288 0 70 chr5 86803346 86803417 -65733842 + ID4 SINE ID 1 66 -17 4 1247 664 42 0 31 chr5 86803417 86803515 -65733744 + (GAAAA)n Simple_repeat Simple_repeat 5 99 0 4 1247 284 288 0 70 chr5 86803515 86803529 -65733730 + ID4 SINE ID 67 80 -3 4 1247 268 290 0 46 chr5 86804310 86804375 -65732884 - PB1D10 SINE Alu -37 80 19 4 1247 761 230 42 0 chr5 86805484 86805649 -65731610 + Lx9 LINE L1 7083 7254 -390 4 1247 180 0 0 0 chr5 86805657 86805677 -65731582 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1247 467 157 52 0 chr5 86805680 86805795 -65731464 + Lx9 LINE L1 7517 7637 -7 4 1247 26 50 0 0 chr5 86805904 86805944 -65731315 + AT_rich Low_complexity Low_complexity 1 40 0 4 1247 912 264 90 68 chr5 86806604 86806970 -65730289 + MTEa LTR MaLR 2 375 -4 4 1247 3048 308 45 48 chr5 86806970 86807487 -65729772 + MTEa-int LTR MaLR 19 685 -895 4 1247 3665 65 2 10 chr5 86807487 86807973 -65729286 + L1Md_F2 LINE L1 6100 6581 -1 4 1247 3048 300 42 51 chr5 86807973 86808007 -65729252 + MTEa-int LTR MaLR 686 691 -889 4 1247 765 0 0 0 chr5 86808007 86808092 -65729167 + (GAA)n Simple_repeat Simple_repeat 1 85 0 5 1247 3048 300 42 51 chr5 86808092 86808826 -65728433 + MTEa-int LTR MaLR 692 1448 -132 4 1247 346 15 59 29 chr5 86809311 86809379 -65727880 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 5 1247 458 278 70 41 chr5 86809398 86809776 -65727483 + L1_Rod LINE L1 1051 1450 -4397 5 1247 1212 54 0 0 chr5 86809776 86809923 -65727336 + B1_Mm SINE Alu 1 147 0 5 1247 352 295 13 119 chr5 86809923 86810051 -65727208 + L1_Rod LINE L1 1451 1543 -4304 5 1247 409 204 0 11 chr5 86810069 86810163 -65727096 + L1M3 LINE L1 3657 3749 -2391 5 1247 1569 303 46 33 chr5 86810172 86810711 -65726548 + Lx8 LINE L1 6548 7093 -380 5 1247 897 10 0 0 chr5 86810718 86810820 -65726439 + (TTC)n Simple_repeat Simple_repeat 1 102 0 5 1247 7662 91 14 5 chr5 86810822 86812450 -65724809 - L1_Mus3 LINE L1 -13 6625 4979 5 1247 2906 109 10 0 chr5 86812450 86812857 -65724402 - L1VL4 LINE L1 -2342 1217 810 5 1247 279 0 0 0 chr5 86812857 86812888 -65724371 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1247 2906 178 76 3 chr5 86812888 86813316 -65723943 - L1VL4 LINE L1 -5493 809 339 5 1247 490 262 64 83 chr5 86813320 86813524 -65723735 + Lx8 LINE L1 7085 7284 -189 5 1247 1069 287 47 13 chr5 86813642 86814091 -65723168 + Lx7 LINE L1 3687 4150 -1730 5 1247 1318 216 34 14 chr5 86814091 86814387 -65722872 - RLTR15 LTR ERVK 0 359 58 5 1247 2963 217 55 5 chr5 86814411 86815063 -65722196 - Lx2B LINE L1 -15 6985 6301 5 1247 265 192 0 55 chr5 86815074 86815129 -65722130 - RLTR15 LTR ERVK -297 62 11 5 1247 408 245 22 14 chr5 86815134 86815277 -65721982 + Lx7 LINE L1 4216 4359 -1521 5 1247 541 316 13 17 chr5 86815288 86815523 -65721736 + Lx7 LINE L1 4473 4706 -1174 5 1247 682 268 56 9 chr5 86815520 86815735 -65721524 + Lx7 LINE L1 5607 5831 -1865 5 1247 7783 147 2 8 chr5 86815847 86817154 -65720105 - L1_Mm LINE L1 -632 5251 3953 5 1247 2599 126 0 3 chr5 86817154 86817545 -65719714 + Lx LINE L1 6261 6650 -4 5 1247 22 35 0 0 chr5 86817746 86817775 -65719484 + AT_rich Low_complexity Low_complexity 1 29 0 5 1247 315 324 0 0 chr5 86817827 86817901 -65719358 + Lx8 LINE L1 6256 6329 -1144 5 1247 1087 241 36 72 chr5 86817924 86818259 -65719000 - ORR1D2 LTR MaLR -7 363 41 5 1247 1174 341 57 58 chr5 86818259 86818847 -65718412 + Lx8 LINE L1 6497 7069 -404 5 1247 201 74 0 0 chr5 86818847 86818874 -65718385 + (CAA)n Simple_repeat Simple_repeat 1 27 0 5 1247 1174 341 57 58 chr5 86818874 86819113 -65718146 + Lx8 LINE L1 7070 7323 -150 5 1247 281 358 0 16 chr5 86819252 86819374 -65717885 + MTE-int LTR MaLR 1454 1573 -7 5 1247 5475 56 0 0 chr5 86820710 86821389 -65715870 - L1_Mus1 LINE L1 -3 6564 5886 5 1247 312 293 109 20 chr5 86821446 86821547 -65715712 + PB1D10 SINE Alu 5 114 -3 5 1247 251 28 28 0 chr5 86821552 86821588 -65715671 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 5 1247 25 51 0 0 chr5 86821664 86821703 -65715556 + AT_rich Low_complexity Low_complexity 1 39 0 5 1247 432 259 94 114 chr5 86821804 86822101 -65715158 - B4 SINE B4 0 292 2 5 1247 411 353 42 0 chr5 86822644 86822763 -65714496 + RSINE1 SINE B4 21 144 -21 5 1247 779 226 115 10 chr5 86822819 86823011 -65714248 + B3 SINE B2 2 213 -3 5 1247 383 333 216 13 chr5 86823044 86823275 -65713984 - Helitron3Na_Mam RC Helitron -160 326 49 5 1247 23 0 0 0 chr5 86823305 86823328 -65713931 + AT_rich Low_complexity Low_complexity 1 23 0 5 1247 233 243 28 28 chr5 86823329 86823401 -65713858 - MLT1E1A LTR MaLR -497 183 112 5 1247 274 368 105 19 chr5 86823472 86823730 -65713529 - L2a LINE L2 -230 3196 2917 5 1247 203 373 45 0 chr5 86823869 86823979 -65713280 + L2 LINE L2 2583 2697 -722 5 1247 389 309 167 65 chr5 86824181 86824227 -65713032 - MLT2B4 LTR ERVL 0 414 357 5 1247 588 124 0 0 chr5 86824227 86824332 -65712927 + (CA)n Simple_repeat Simple_repeat 2 106 0 5 1247 477 0 0 0 chr5 86824332 86824384 -65712875 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1247 389 309 167 65 chr5 86824384 86824582 -65712677 - MLT2B4 LTR ERVL -58 356 145 5 1247 515 312 97 74 chr5 86824611 86824961 -65712298 + MLT1A LTR MaLR 17 374 0 5 1247 409 273 27 54 chr5 86824961 86825072 -65712187 - MLT2B4 LTR ERVL -449 107 1 5 1247 210 333 33 0 chr5 86825104 86825164 -65712095 + PB1D7 SINE Alu 59 120 0 5 1247 1985 123 64 25 chr5 86826786 86827112 -65710147 - Lx LINE L1 -182 6472 6134 5 1247 334 327 0 0 chr5 86827790 86827894 -65709365 + PB1D10 SINE Alu 8 111 -6 5 1247 459 293 87 5 chr5 86827944 86828150 -65709109 + L1MC2 LINE L1 5572 5794 -539 5 1247 338 292 50 11 chr5 86828170 86828350 -65708909 + L1MC2 LINE L1 5868 6054 -290 5 1247 1425 70 0 0 chr5 86828379 86828565 -65708694 - MTB LTR MaLR -214 186 1 5 1247 224 350 0 0 chr5 86828629 86828709 -65708550 + (CA)n Simple_repeat Simple_repeat 1 80 0 5 1247 3109 42 100 2 chr5 86828803 86829212 -65708047 + L1_Mus1 LINE L1 6117 6565 -2 5 1247 348 64 0 0 chr5 86829212 86829259 -65708000 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 5 1247 1683 39 0 0 chr5 86829979 86830185 -65707074 + L1Md_A LINE L1 6377 6582 0 5 1247 13965 160 49 19 chr5 86830749 86831936 -65705323 + Lx2B LINE L1 833 2049 -3837 5 1247 411 21 0 0 chr5 86831936 86831984 -65705275 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1247 19230 150 27 15 chr5 86831984 86833354 -65703905 + Lx2B LINE L1 2050 3483 -2403 5 1247 1168 62 0 0 chr5 86833354 86833498 -65703761 + B1_Mm SINE Alu 2 145 -2 5 1247 338 0 24 0 chr5 86833498 86833540 -65703719 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1247 19230 150 27 15 chr5 86833540 86835526 -65701733 + Lx2B LINE L1 3484 5451 -435 5 1247 192 40 0 0 chr5 86835526 86835551 -65701708 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1247 19230 164 48 16 chr5 86835551 86836188 -65701071 + Lx2B LINE L1 5452 6131 -869 5 1247 2191 108 82 11 chr5 86836188 86836564 -65700695 - RLTR9D LTR ERVK 0 403 1 5 1247 5457 190 89 18 chr5 86836564 86837380 -65699879 + Lx2B LINE L1 6132 6997 -3 5 1247 459 0 0 0 chr5 86837866 86837917 -65699342 + (TATG)n Simple_repeat Simple_repeat 4 54 0 5 1247 354 293 0 0 chr5 86838654 86838736 -65698523 - ID_B1 SINE B4 0 224 143 5 1247 4234 104 32 2 chr5 86838758 86839383 -65697876 - Lx LINE L1 -6 6648 6005 5 1247 832 202 19 37 chr5 86841074 86841290 -65695969 - Lx7 LINE L1 -310 7386 7175 5 1247 180 152 0 0 chr5 86841564 86841597 -65695662 + CT-rich Low_complexity Low_complexity 2 34 0 5 1247 1047 198 36 44 chr5 86841668 86841943 -65695316 + BGLII_B LTR ERVK 1 273 -168 5 1247 305 274 235 0 chr5 86843810 86843912 -65693347 + B1_Mur4 SINE Alu 14 139 -11 5 1247 255 31 0 0 chr5 86843913 86843945 -65693314 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1247 789 227 32 110 chr5 86844041 86844259 -65693000 - B3 SINE B2 -1 215 15 5 1247 32 0 0 0 chr5 86844696 86844728 -65692531 + AT_rich Low_complexity Low_complexity 1 32 0 5 1247 994 101 0 0 chr5 86844759 86844897 -65692362 - B1_Mm SINE Alu 0 147 10 5 1247 315 287 0 11 chr5 86844901 86844989 -65692270 + MLT1E1 LTR MaLR 169 255 -399 5 1247 764 211 0 100 chr5 86845161 86845236 -65692023 - RLTR11A LTR ERVK 0 528 460 5 1247 261 0 0 0 chr5 86845236 86845265 -65691994 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1247 764 211 0 100 chr5 86845265 86845389 -65691870 - RLTR11A LTR ERVK -69 459 349 5 1247 894 151 216 0 chr5 86845388 86845573 -65691686 - RLTR11A LTR ERVK -303 225 1 5 1247 4937 184 20 37 chr5 86845623 86846441 -65690818 - MYSERV16_I-int LTR ERVK -83 2243 1446 5 1247 633 135 0 0 chr5 86846441 86846530 -65690729 - 4.5SRNA scRNA scRNA -4 90 2 5 1247 4937 184 20 37 chr5 86846530 86846883 -65690376 - MYSERV16_I-int LTR ERVK -881 1445 1091 5 1247 1152 112 5 21 chr5 86847301 86847492 -65689767 - L1Md_F2 LINE L1 0 6582 6395 5 1247 340 209 169 19 chr5 86847547 86847874 -65689385 - L1M4 LINE L1 -3000 3146 2750 5 1247 304 301 103 103 chr5 86848705 86848938 -65688321 + MLT1E1 LTR MaLR 359 591 -4 5 1247 22 0 0 0 chr5 86849490 86849512 -65687747 + AT_rich Low_complexity Low_complexity 1 22 0 5 1247 21 0 0 0 chr5 86850410 86850431 -65686828 + AT_rich Low_complexity Low_complexity 1 21 0 5 1247 459 325 0 6 chr5 86850731 86850898 -65686361 - MER5A1 DNA MER1_type 0 166 1 5 1247 291 383 28 7 chr5 86852195 86852337 -65684922 + Charlie15a DNA MER1_type 62 206 -18 5 1247 543 31 0 0 chr5 86853049 86853114 -65684145 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1247 1449 230 50 11 chr5 86853542 86853705 -65683554 + ORR1D1 LTR MaLR 1 163 -211 5 1247 558 0 0 0 chr5 86853705 86853767 -65683492 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 1247 1449 230 50 11 chr5 86853767 86853963 -65683296 + ORR1D1 LTR MaLR 164 373 -1 5 1247 610 274 0 0 chr5 86854231 86854366 -65682893 - B1F2 SINE Alu -14 135 1 5 1247 22 0 0 0 chr5 86854450 86854472 -65682787 + AT_rich Low_complexity Low_complexity 1 22 0 5 1247 506 256 112 28 chr5 86854852 86855101 -65682158 - Lx8 LINE L1 -1 7472 7203 5 1247 724 319 79 50 chr5 86855139 86855416 -65681843 + B4A SINE B4 8 292 0 5 1247 753 145 0 0 chr5 86855447 86855626 -65681633 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1247 1061 89 0 11 chr5 86855646 86855828 -65681431 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1247 21 0 0 0 chr5 86857069 86857090 -65680169 + AT_rich Low_complexity Low_complexity 1 21 0 5 1247 441 0 0 0 chr5 86857951 86858000 -65679259 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 5 1247 793 318 80 26 chr5 86858123 86858553 -65678706 + Lx8 LINE L1 6897 7477 -167 5 1247 360 0 0 0 chr5 86858553 86858593 -65678666 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1247 444 349 62 30 chr5 86858593 86858619 -65678640 + Lx8 LINE L1 7478 7503 -141 5 1247 830 204 131 0 chr5 86859772 86859963 -65677296 + B3 SINE B2 1 216 0 5 1247 331 175 0 36 chr5 86862007 86862090 -65675169 + GA-rich Low_complexity Low_complexity 1 80 0 5 1247 569 288 58 29 chr5 86863025 86863197 -65674062 - B3 SINE B2 -36 180 4 5 1247 319 244 171 68 chr5 86863966 86864142 -65673117 - MIRb SINE MIR -25 243 50 5 1247 1079 240 72 58 chr5 86864341 86864619 -65672640 - B4A SINE B4 -4 288 7 5 1247 24 32 0 0 chr5 86865679 86865710 -65671549 + AT_rich Low_complexity Low_complexity 1 31 0 5 1247 194 338 170 15 chr5 86865786 86865921 -65671338 + MIRb SINE MIR 19 174 -94 5 1247 234 174 2 0 chr5 86866139 86866196 -65671063 - B1F SINE Alu -7 142 52 5 1247 321 85 0 0 chr5 86866516 86866563 -65670696 - Lx4B LINE L1 -1245 5813 5767 5 1247 1494 251 133 9 chr5 86866560 86867026 -65670233 + Lx5 LINE L1 6527 7050 0 5 1247 270 331 42 73 chr5 86867368 86867560 -65669699 + MIR SINE MIR 28 213 -49 5 1247 351 0 0 0 chr5 86867577 86867616 -65669643 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1247 779 323 43 71 chr5 86867660 86868053 -65669206 + MER47B DNA MER2_type 36 417 -1 5 1247 476 156 58 0 chr5 86868666 86868840 -65668419 + Lx4A LINE L1 6831 7057 -1 5 1247 387 309 31 93 chr5 86869566 86869791 -65667468 - MTEa LTR MaLR -2 377 167 5 1247 253 364 65 18 chr5 86869673 86869841 -65667418 + ORR1E LTR MaLR 79 254 -105 6 1247 426 298 110 37 chr5 86869826 86870098 -65667161 + ORR1E LTR MaLR 56 347 -12 6 1247 597 285 18 18 chr5 86870128 86870296 -65666963 + MLT1A0 LTR MaLR 198 365 0 6 1247 834 274 24 28 chr5 86871057 86871305 -65665954 - Lx6 LINE L1 -177 7283 7037 6 1247 213 96 56 37 chr5 86871476 86871530 -65665729 + (TA)n Simple_repeat Simple_repeat 1 55 0 6 1247 585 188 152 0 chr5 86871561 86871673 -65665586 - B1_Mur4 SINE Alu -21 129 1 6 1247 651 57 0 0 chr5 86871714 86871802 -65665457 + (CA)n Simple_repeat Simple_repeat 2 89 0 6 1247 825 159 72 56 chr5 86872116 86872296 -65664963 + B2_Mm2 SINE B2 1 183 -12 6 1247 1385 55 0 27 chr5 86872588 86872774 -65664485 - B2_Mm2 SINE B2 -14 181 1 6 1247 367 329 157 44 chr5 86873418 86873647 -65663612 - MIR SINE MIR 0 262 8 6 1247 13278 69 1 0 chr5 86875121 86876927 -65660332 + L1Md_F2 LINE L1 3779 5586 -297 6 1247 7060 88 16 2 chr5 86876927 86877907 -65659352 + L1Md_F2 LINE L1 5587 6580 -2 6 1247 360 304 94 57 chr5 86877982 86878386 -65658873 - L1MC5 LINE L1 -282 7679 7261 6 1247 934 269 65 6 chr5 86878978 86879330 -65657929 + Lx9 LINE L1 7250 7622 -22 6 1247 33747 45 0 4 chr5 86879353 86884604 -65652655 + L1Md_T LINE L1 263 5589 -297 6 1247 8278 38 2 0 chr5 86884604 86885598 -65651661 + L1Md_T LINE L1 5590 6585 0 6 1247 4887 79 9 3 chr5 86886027 86887036 -65650223 + Lx3A LINE L1 5312 6326 -655 6 1247 402 141 0 0 chr5 86887039 86887110 -65650149 + Lx3A LINE L1 6896 6966 -15 6 1247 900 28 0 0 chr5 86887110 86887217 -65650042 + (GGAAA)n Simple_repeat Simple_repeat 4 110 0 6 1247 486 0 0 0 chr5 86887231 86887285 -65649974 + (TAA)n Simple_repeat Simple_repeat 2 55 0 6 1247 389 255 109 14 chr5 86887293 86887440 -65649819 + B3A SINE B2 38 198 0 6 1247 509 255 60 40 chr5 86887569 86887769 -65649490 - Lx6 LINE L1 0 7460 7257 6 1247 180 111 0 0 chr5 86887926 86887953 -65649306 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1247 186 43 0 0 chr5 86888175 86888198 -65649061 + (TC)n Simple_repeat Simple_repeat 2 24 0 6 1247 407 218 0 10 chr5 86888228 86888330 -65648929 + (TG)n Simple_repeat Simple_repeat 2 102 0 6 1247 522 188 157 11 chr5 86888375 86888553 -65648706 - Lx9 LINE L1 -43 7601 7398 6 1247 1518 55 0 5 chr5 86888636 86888836 -65648423 - L1Md_F3 LINE L1 0 6584 6386 6 1247 265 324 66 9 chr5 86888836 86888942 -65648317 - MLT1E3 LTR MaLR -143 537 426 6 1247 469 305 45 28 chr5 86888983 86889162 -65648097 - MLT1E3 LTR MaLR -442 182 1 6 1247 2197 184 30 15 chr5 86889906 86890313 -65646946 - MTC LTR MaLR -8 413 1 6 1247 796 163 20 0 chr5 86890313 86890466 -65646793 - MTC-int LTR MaLR 0 1258 1103 6 1247 216 24 73 0 chr5 86890466 86890507 -65646752 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 6 1247 260 225 0 6 chr5 86890884 86891045 -65646214 + (TA)n Simple_repeat Simple_repeat 2 161 0 6 1247 4959 206 32 4 chr5 86891048 86892014 -65645245 - MTC-int LTR MaLR -265 993 1 6 1247 1152 196 12 3 chr5 86892014 86892347 -65644912 - MTC LTR MaLR 0 421 1 6 1247 399 338 58 0 chr5 86892534 86892673 -65644586 + B3A SINE B2 2 148 -50 6 1247 409 263 55 32 chr5 86893122 86893342 -65643917 - L1MA4 LINE L1 -48 6252 6027 6 1247 383 208 0 40 chr5 86893750 86893825 -65643434 - HAL1-3A_ME LINE L1 -811 2047 1976 6 1247 538 305 111 84 chr5 86893858 86894119 -65643140 - B4A SINE B4 0 292 25 6 1247 342 0 0 0 chr5 86894643 86894681 -65642578 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1247 2677 97 0 8 chr5 86895400 86895783 -65641476 + Lx LINE L1 6054 6433 -221 6 1247 263 379 45 19 chr5 86897225 86897381 -65639878 + MIRc SINE MIR 70 229 -39 6 1247 21 36 0 0 chr5 86897385 86897413 -65639846 + AT_rich Low_complexity Low_complexity 1 28 0 6 1247 22 0 0 0 chr5 86897464 86897486 -65639773 + AT_rich Low_complexity Low_complexity 1 22 0 6 1247 861 150 0 0 chr5 86898307 86898454 -65638805 + (TTCC)n Simple_repeat Simple_repeat 2 148 0 6 1247 273 336 53 30 chr5 86899601 86899733 -65637526 - B1F1 SINE Alu -10 139 5 6 1247 287 322 0 8 chr5 86899959 86900078 -65637181 - L1MB3 LINE L1 -98 6583 6466 6 1247 25 0 0 0 chr5 86900106 86900131 -65637128 + AT_rich Low_complexity Low_complexity 1 25 0 6 1247 434 275 49 11 chr5 86900303 86900487 -65636772 - L1MB3 LINE L1 -408 6273 6083 6 155 271 312 9 89 chr5 86900503 86900819 -65636440 - L1MB3 LINE L1 -974 5664 5374 6 1248 546 341 0 0 chr5 86900889 86901018 -65636241 - B1_Mur2 SINE Alu -20 129 1 6 1248 3040 84 61 18 chr5 86901025 86901483 -65635776 + Lx3_Mus LINE L1 6527 7004 -5 6 1248 672 13 0 0 chr5 86901506 86901583 -65635676 + (TC)n Simple_repeat Simple_repeat 2 78 0 6 1248 342 80 0 0 chr5 86901583 86901632 -65635627 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1248 456 287 26 59 chr5 86901639 86901791 -65635468 - B3 SINE B2 -68 148 2 6 1248 228 288 108 0 chr5 86901797 86901936 -65635323 - L1MB3 LINE L1 -1382 5262 5109 6 1248 399 244 112 12 chr5 86901939 86902109 -65635150 - L1MB3 LINE L1 -5356 1186 1000 6 1248 203 197 45 15 chr5 86902165 86902232 -65635027 + T-rich Low_complexity Low_complexity 4 72 0 6 1248 950 279 71 34 chr5 86903408 86903705 -65633554 + MTE2a LTR MaLR 4 311 -68 6 1248 390 254 0 0 chr5 86903766 86903876 -65633383 + (CATA)n Simple_repeat Simple_repeat 1 110 0 6 1248 768 302 64 18 chr5 86903897 86904111 -65633148 + MTE2b-int LTR MaLR 133 351 -1229 6 1248 452 48 16 0 chr5 86904111 86904174 -65633085 + (TTA)n Simple_repeat Simple_repeat 1 64 0 6 1248 768 302 64 18 chr5 86904174 86904239 -65633020 + MTE2b-int LTR MaLR 352 424 -1156 6 1248 496 291 59 26 chr5 86904218 86904370 -65632889 + MTE2b-int LTR MaLR 539 695 -885 6 1248 428 278 114 45 chr5 86904435 86904699 -65632560 + Lx9 LINE L1 6704 6985 -659 6 1248 1687 189 121 14 chr5 86904700 86905071 -65632188 - MTD LTR MaLR -8 411 1 6 1248 462 329 47 44 chr5 86905072 86905554 -65631705 + Lx9 LINE L1 6833 7458 -186 6 1248 1570 291 131 34 chr5 86905821 86906081 -65631178 + MTE2b-int LTR MaLR 718 1133 -447 6 1248 2449 140 55 2 chr5 86906081 86906481 -65630778 - MTC LTR MaLR 0 421 1 6 1248 1570 285 132 22 chr5 86906481 86906861 -65630398 + MTE2b-int LTR MaLR 1134 1569 -11 6 1248 670 308 116 17 chr5 86906872 86907216 -65630043 + MTE2b LTR MaLR 2 379 0 6 1248 389 282 75 27 chr5 86907342 86907675 -65629584 + L1MA6 LINE L1 5926 6294 -6 6 1248 21 0 0 0 chr5 86907675 86907696 -65629563 + AT_rich Low_complexity Low_complexity 1 21 0 6 1248 553 299 61 81 chr5 86908242 86908602 -65628657 + ORR1E LTR MaLR 5 357 -2 6 1248 8376 104 4 8 chr5 86908964 86911094 -65626165 - L1_Mus3 LINE L1 0 6638 4519 6 1248 180 0 0 0 chr5 86911094 86911114 -65626145 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1248 263 292 0 0 chr5 86911435 86911500 -65625759 + B4A SINE B4 2 66 -226 6 1248 260 204 69 35 chr5 86912024 86912197 -65625062 + (TA)n Simple_repeat Simple_repeat 1 179 0 6 1248 1400 282 57 16 chr5 86912524 86912964 -65624295 - RMER5 LTR ERV1 -4 530 73 6 1248 408 306 116 48 chr5 86913098 86913287 -65623972 + MER3 DNA MER1_type 2 203 -6 6 1248 2286 193 32 0 chr5 86913694 86914130 -65623129 - Lx5 LINE L1 -214 6836 6387 6 1248 1774 206 53 22 chr5 86914130 86914586 -65622673 + Lx5 LINE L1 5909 6378 -672 6 1248 445 288 0 77 chr5 86914631 86914719 -65622540 + MER20 DNA MER1_type 3 83 -136 6 1248 228 35 0 0 chr5 86914719 86914748 -65622511 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1248 445 288 0 77 chr5 86914748 86914802 -65622457 + MER20 DNA MER1_type 84 134 -85 6 1248 937 90 20 14 chr5 86915192 86915338 -65621921 + L1_Mus1 LINE L1 6421 6567 0 6 1248 201 292 17 78 chr5 86918501 86918616 -65618643 - MIRb SINE MIR -60 208 101 6 1248 3796 74 6 14 chr5 86918618 86919138 -65618121 + L1_Mus3 LINE L1 6123 6638 0 6 1248 182 235 99 42 chr5 86920422 86920493 -65616766 - L4 LINE RTE -1632 397 323 6 1248 2536 113 2 8 chr5 86921381 86921783 -65615476 + L1_Mm LINE L1 4569 4968 -915 6 1248 1582 257 75 52 chr5 86922118 86922719 -65614540 - RLTR22_Mur LTR ERVK -596 808 1 6 1248 347 275 9 0 chr5 86922922 86923031 -65614228 + MER2 DNA MER2_type 116 225 -120 6 1248 2204 212 54 11 chr5 86923687 86924207 -65613052 + Lx2B LINE L1 6457 6998 -2 6 1248 519 344 87 32 chr5 86924207 86924609 -65612650 + L1MDb LINE L1 780 1203 -5206 6 1248 230 322 98 10 chr5 86924693 86924897 -65612362 + L1MDb LINE L1 1270 1491 -5011 6 1248 236 333 0 42 chr5 86927362 86927434 -65609825 - B4A SINE B4 0 292 224 6 1248 4748 99 9 19 chr5 86929084 86929781 -65607478 + Lx2 LINE L1 6308 6997 0 6 1248 188 149 0 21 chr5 86929907 86929955 -65607304 + (TTGG)n Simple_repeat Simple_repeat 2 48 0 6 1248 2958 110 6 23 chr5 86930933 86931189 -65606070 - L1_Mm LINE L1 -19 5864 5615 6 1248 6205 115 50 8 chr5 86931189 86932108 -65605151 + RMER17B LTR ERVK 1 958 0 6 1248 2958 110 6 23 chr5 86932108 86932326 -65604933 - L1_Mm LINE L1 -269 5614 5398 6 1248 4973 114 28 12 chr5 86932326 86933081 -65604178 + Lx LINE L1 5872 6638 -16 6 1248 184 289 39 0 chr5 86934087 86934139 -65603120 + MIRc SINE MIR 128 181 -87 6 1248 702 301 57 25 chr5 86934338 86934703 -65602556 + L1M2 LINE L1 3117 3501 -2642 6 1248 1215 55 0 7 chr5 86934703 86934851 -65602408 + B1_Mus1 SINE Alu 1 147 -1 6 1248 702 301 57 25 chr5 86934851 86935016 -65602243 + L1M2 LINE L1 3502 3664 -2479 6 1248 312 27 0 0 chr5 86935016 86935053 -65602206 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1248 572 0 15 0 chr5 86935059 86935127 -65602132 + (GA)n Simple_repeat Simple_repeat 1 69 0 6 1248 289 145 28 28 chr5 86935234 86935305 -65601954 + (TATG)n Simple_repeat Simple_repeat 4 74 0 6 1248 501 80 0 0 chr5 86935315 86935390 -65601869 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 1248 234 0 0 0 chr5 86935390 86935416 -65601843 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1248 952 141 140 10 chr5 86937440 86937640 -65599619 - URR1A DNA MER1_type 0 226 1 6 1248 858 223 37 37 chr5 86937911 86938125 -65599134 + B3 SINE B2 1 214 -2 6 1248 312 293 49 0 chr5 86938140 86938222 -65599037 + B1F1 SINE Alu 13 98 -51 6 1248 6283 47 0 0 chr5 86938230 86939032 -65598227 + L1Md_F3 LINE L1 4785 5586 -297 6 1248 8068 30 20 0 chr5 86939032 86940010 -65597249 + L1Md_F3 LINE L1 5587 6584 0 6 1248 240 273 84 74 chr5 86940067 86940162 -65597097 + MT2B LTR ERVL 155 250 -351 6 1248 358 295 76 0 chr5 86940079 86940184 -65597075 + PB1D10 SINE Alu 5 117 0 6 1248 1059 112 17 6 chr5 86940303 86940483 -65596776 + L1_Mus3 LINE L1 6449 6630 -8 6 1248 338 250 195 31 chr5 86940529 86940657 -65596602 + B1F SINE Alu 1 149 0 6 1248 371 139 28 0 chr5 86941147 86941219 -65596040 - Lx5 LINE L1 -11 7039 6966 6 1248 251 233 43 32 chr5 86941494 86941587 -65595672 - Lx8 LINE L1 0 7473 7380 6 1248 1127 284 80 3 chr5 86941613 86941977 -65595282 - Lx8 LINE L1 -152 7321 6930 6 1248 1837 269 60 8 chr5 86942124 86942738 -65594521 + Lx8 LINE L1 6826 7471 -2 6 1248 7369 119 5 6 chr5 86942813 86944136 -65593123 + Lx LINE L1 5337 6654 0 7 1248 255 79 0 0 chr5 86944141 86944179 -65593080 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1248 558 67 0 0 chr5 86944437 86944512 -65592747 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 7 1248 252 246 17 17 chr5 86944657 86944715 -65592544 - B1F SINE Alu -89 60 3 7 1248 219 103 0 0 chr5 86944889 86944928 -65592331 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 7 1248 23 0 0 0 chr5 86945906 86945929 -65591330 + AT_rich Low_complexity Low_complexity 1 23 0 7 1248 347 340 113 49 chr5 86945944 86946191 -65591068 - B4A SINE B4 0 292 30 7 1248 21 0 0 0 chr5 86946711 86946732 -65590527 + AT_rich Low_complexity Low_complexity 1 21 0 7 1248 1474 185 99 20 chr5 86948523 86948672 -65588587 + ORR1D1 LTR MaLR 5 180 -194 7 1248 482 0 0 17 chr5 86948672 86948731 -65588528 + (TC)n Simple_repeat Simple_repeat 1 58 0 7 1248 1474 185 99 20 chr5 86948731 86948924 -65588335 + ORR1D1 LTR MaLR 181 374 0 7 1248 210 163 23 0 chr5 86948924 86948967 -65588292 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1248 4388 117 12 3 chr5 86949343 86949997 -65587262 + Lx2 LINE L1 5985 6644 -353 7 1248 1022 145 42 71 chr5 86949987 86950225 -65587034 + Lx LINE L1 6417 6647 -7 7 1248 21 0 0 0 chr5 86950363 86950384 -65586875 + AT_rich Low_complexity Low_complexity 1 21 0 7 1248 188 257 42 14 chr5 86950750 86950821 -65586438 - MIR SINE MIR -77 185 113 7 1248 482 303 46 80 chr5 86951719 86951981 -65585278 - MIR SINE MIR -1 261 9 7 1248 183 318 0 0 chr5 86952012 86952056 -65585203 - MIRb SINE MIR -17 251 208 7 1248 655 84 458 0 chr5 86953668 86953799 -65583460 + B2_Mm2 SINE B2 2 192 -3 7 1248 231 156 25 38 chr5 86954027 86954107 -65583152 + GA-rich Low_complexity Low_complexity 6 84 0 7 1248 378 0 0 0 chr5 86954135 86954177 -65583082 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 7 1248 628 285 40 0 chr5 86954178 86954329 -65582930 - B3A SINE B2 -41 157 1 7 1248 192 40 0 0 chr5 86955201 86955226 -65582033 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 7 1248 269 259 70 62 chr5 86955709 86955981 -65581278 + L1M3 LINE L1 2909 3182 -2958 7 1248 505 276 184 8 chr5 86955985 86956252 -65581007 + Lx9 LINE L1 5673 5986 -1658 7 1248 30 0 0 0 chr5 86956395 86956425 -65580834 + AT_rich Low_complexity Low_complexity 1 30 0 7 1248 563 191 27 0 chr5 86956443 86956590 -65580669 + (CA)n Simple_repeat Simple_repeat 1 151 0 7 1248 309 293 60 0 chr5 86956590 86956706 -65580553 + Lx9 LINE L1 6345 6467 -1177 7 1248 679 252 0 39 chr5 86956733 86956886 -65580373 + ID_B1 SINE B4 68 214 -10 7 1248 24 53 0 0 chr5 86957344 86957382 -65579877 + AT_rich Low_complexity Low_complexity 1 38 0 7 1248 648 208 23 15 chr5 86957937 86958069 -65579190 - B1_Mus2 SINE Alu -10 137 5 7 1248 255 175 0 0 chr5 86958501 86958558 -65578701 + (CCA)n Simple_repeat Simple_repeat 1 57 0 7 1248 299 311 15 92 chr5 86958631 86958762 -65578497 - B4A SINE B4 0 292 172 7 1248 1142 106 0 11 chr5 86959226 86959408 -65577851 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1248 453 303 103 0 chr5 86960041 86960216 -65577043 - B3A SINE B2 -4 194 2 7 1248 491 182 18 0 chr5 86960255 86960365 -65576894 + CT-rich Low_complexity Low_complexity 2 113 0 7 1248 786 91 12 0 chr5 86960390 86960511 -65576748 + B1_Mm SINE Alu 17 138 -9 7 1248 30 0 0 0 chr5 86960717 86960747 -65576512 + AT_rich Low_complexity Low_complexity 1 30 0 7 1248 207 0 0 0 chr5 86962155 86962178 -65575081 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1248 261 0 0 0 chr5 86962942 86962971 -65574288 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1248 283 312 45 0 chr5 86963075 86963187 -65574072 + PB1D9 SINE Alu 1 117 -3 7 1248 40 49 0 0 chr5 86963689 86963750 -65573509 + AT_rich Low_complexity Low_complexity 1 61 0 7 1248 381 256 121 24 chr5 86965075 86965199 -65572060 - LTR48 LTR ERV1 -641 146 11 7 1248 589 287 74 79 chr5 86966142 86966331 -65570928 + B3A SINE B2 2 189 -9 7 1248 297 0 0 0 chr5 86966678 86966711 -65570548 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1248 676 314 12 0 chr5 86966711 86966883 -65570376 - B3 SINE B2 -37 179 6 7 1248 428 259 81 7 chr5 86967352 86967488 -65569771 + MLT1J1 LTR MaLR 1 146 -298 7 1248 768 42 0 0 chr5 86967911 86968007 -65569252 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 7 1248 579 241 0 9 chr5 86968051 86968160 -65569099 + RSINE1 SINE B4 2 109 -56 7 1248 261 0 0 0 chr5 86968445 86968474 -65568785 + (CATTT)n Simple_repeat Simple_repeat 3 31 0 7 1248 199 227 0 22 chr5 86968981 86969026 -65568233 + MIRb SINE MIR 135 178 -90 7 1248 213 342 142 66 chr5 86969030 86969227 -65568032 + B4A SINE B4 2 213 -79 7 1248 444 37 0 0 chr5 86969337 86969391 -65567868 + (TA)n Simple_repeat Simple_repeat 1 54 0 7 1248 290 244 186 39 chr5 86970606 86970763 -65566496 + Lx8 LINE L1 5753 5929 -371 7 1248 423 0 0 0 chr5 86971840 86971887 -65565372 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 7 1248 587 51 13 0 chr5 86972134 86972213 -65565046 + (TG)n Simple_repeat Simple_repeat 2 81 0 7 1248 231 257 41 41 chr5 86972595 86972627 -65564632 + polypyrimidine Low_complexity Low_complexity 41 75 0 7 1248 1112 28 0 73 chr5 86972627 86972819 -65564440 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 7 1248 231 257 41 41 chr5 86972819 86972837 -65564422 + polypyrimidine Low_complexity Low_complexity 24 40 0 7 1248 758 89 9 0 chr5 86972837 86972949 -65564310 + (TCTCC)n Simple_repeat Simple_repeat 1 113 0 7 1248 231 257 41 41 chr5 86972949 86972970 -65564289 + polypyrimidine Low_complexity Low_complexity 3 23 0 7 1248 395 0 0 39 chr5 86972973 86973025 -65564234 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 7 1248 274 270 33 22 chr5 86973026 86973117 -65564142 + MLT1C LTR MaLR 373 464 -3 7 1248 210 127 84 0 chr5 86974560 86974631 -65562628 + CT-rich Low_complexity Low_complexity 2 78 0 7 1248 715 288 65 24 chr5 86974635 86974881 -65562378 - Lx6 LINE L1 -26 7434 7179 7 1248 636 38 0 0 chr5 86975041 86975120 -65562139 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 7 1248 6132 109 27 39 chr5 86975149 86976004 -65561255 + Lx3C LINE L1 5971 6834 -142 7 1248 7928 34 5 32 chr5 86976004 86977009 -65560250 + RLTR13A3 LTR ERVK 1 978 0 7 1248 6132 109 27 39 chr5 86977009 86977164 -65560095 + Lx3C LINE L1 6835 6969 -7 7 1248 36254 47 12 3 chr5 86977191 86982457 -65554802 + L1Md_T LINE L1 307 5586 -297 7 1248 7976 57 0 0 chr5 86982457 86983453 -65553806 + L1Md_T LINE L1 5587 6582 0 7 1248 192 77 0 0 chr5 86983468 86983494 -65553765 + (GAAA)n Simple_repeat Simple_repeat 1 26 0 7 1248 318 278 46 83 chr5 86983518 86983734 -65553525 + L1M5 LINE L1 5319 5526 -638 7 1248 307 271 199 0 chr5 86983965 86984116 -65553143 - MLT1D LTR MaLR -51 454 274 7 1248 445 298 121 11 chr5 86984143 86984333 -65552926 - MLT1D LTR MaLR -292 213 3 7 1248 259 351 61 26 chr5 86984448 86984562 -65552697 - ID_B1 SINE B4 -7 217 100 7 1248 1871 90 0 0 chr5 86984723 86984978 -65552281 - L1_Mus2 LINE L1 0 6566 6312 7 1248 227 315 11 53 chr5 86985330 86985347 -65551912 - ID_B1 SINE B4 -123 101 85 7 1248 207 88 0 0 chr5 86985347 86985381 -65551878 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 7 1248 271 296 0 14 chr5 86985385 86985457 -65551802 - ID4 SINE ID -1 82 12 7 1248 300 322 16 16 chr5 86985487 86985610 -65551649 - ID_B1 SINE B4 -9 215 93 7 1248 1055 211 10 10 chr5 86986491 86986687 -65550572 + B3 SINE B2 15 210 -6 7 1248 373 273 19 109 chr5 86987637 86987793 -65549466 - B1_Mur1 SINE Alu -3 146 5 7 1248 1694 125 46 126 chr5 86987831 86988045 -65549214 + ORR1A4 LTR MaLR 1 179 -150 7 1248 222 37 0 0 chr5 86988045 86988072 -65549187 + (CCTG)n Simple_repeat Simple_repeat 4 30 0 7 1248 1694 125 46 126 chr5 86988072 86988206 -65549053 + ORR1A4 LTR MaLR 180 321 -8 7 1248 264 137 0 0 chr5 86988219 86988270 -65548989 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1248 1784 57 8 2 chr5 86989211 86989448 -65547811 + L1Md_T LINE L1 5367 5615 -729 7 1248 8440 34 0 0 chr5 86989448 86990444 -65546815 + L1Md_T LINE L1 5587 6582 0 7 1248 1060 75 6 6 chr5 86990469 86990630 -65546629 + (TTC)n Simple_repeat Simple_repeat 1 161 0 7 1248 213 244 0 0 chr5 86990638 86990679 -65546580 + polypyrimidine Low_complexity Low_complexity 3 43 0 7 1248 264 348 75 87 chr5 86990965 86991286 -65545973 + ORR1D1 LTR MaLR 45 361 -13 7 1248 180 111 0 0 chr5 86991296 86991323 -65545936 + (CAA)n Simple_repeat Simple_repeat 1 27 0 7 1248 21 0 0 0 chr5 86991496 86991517 -65545742 + AT_rich Low_complexity Low_complexity 1 21 0 7 1248 372 288 66 5 chr5 86991532 86991648 -65545611 - B1F SINE Alu -15 133 4 7 1248 281 247 0 0 chr5 86991730 86991803 -65545456 - L1_Rod LINE L1 -628 5219 5147 7 1248 255 211 65 84 chr5 86992242 86992397 -65544862 - Lx9 LINE L1 -15 7629 7478 7 1248 249 220 46 93 chr5 86993101 86993209 -65544050 + MIRb SINE MIR 108 198 -64 7 1248 3256 302 88 20 chr5 86993233 86994582 -65542677 - Lx8 LINE L1 -1 7472 6032 7 1248 319 335 116 42 chr5 86994934 86995124 -65542135 + L1M2c LINE L1 182 385 -6404 7 1248 2032 278 78 10 chr5 86997156 86997865 -65539394 + Lx9 LINE L1 6703 7459 -185 7 1248 273 119 0 0 chr5 86997866 86997908 -65539351 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1248 285 77 0 0 chr5 86998407 86998446 -65538813 + MTB_Mm LTR MaLR 1 39 -368 7 1248 2456 109 139 19 chr5 86998446 86998876 -65538383 + RLTR45 LTR ERVK 1 482 0 7 1248 3471 108 42 11 chr5 86998876 86999398 -65537861 + RLTR45-int LTR ERVK 1 538 -6706 7 1248 2831 63 0 47 chr5 86999615 87000000 -65537259 + RLTR45-int LTR ERVK 1176 1542 -5702 7 1248 774 75 0 0 chr5 87000000 87000106 -65537153 + RLTR45-int LTR ERVK 1543 1648 -5596 1 1248 7269 143 11 13 chr5 87000195 87001602 -65535657 + RLTR45-int LTR ERVK 6331 7761 -456 1 1248 2530 123 22 123 chr5 87001602 87002138 -65535121 + RLTR45 LTR ERVK 1 482 0 1 1248 2718 55 8 21 chr5 87002138 87002510 -65534749 + MTB LTR MaLR 34 400 0 2 1248 21 0 0 0 chr5 87002599 87002620 -65534639 + AT_rich Low_complexity Low_complexity 1 21 0 3 1248 1606 110 17 20 chr5 87002627 87002923 -65534336 - Lx3A LINE L1 -677 6304 6010 4 1248 4034 96 19 7 chr5 87002921 87003539 -65533720 + Lx3A LINE L1 6310 6935 -46 4 1248 236 91 0 0 chr5 87003540 87003573 -65533686 - L1_Mur1 LINE L1 -3508 2378 2346 5 1248 547 208 6 12 chr5 87003596 87003757 -65533502 + (TCTA)n Simple_repeat Simple_repeat 3 162 0 6 1248 615 297 67 52 chr5 87004164 87004940 -65532319 + L1M2 LINE L1 4846 5605 -278 7 1248 2764 81 2 20 chr5 87004943 87005347 -65531912 + MMVL30-int LTR ERV1 25 421 -7135 8 1248 371 274 40 40 chr5 87005336 87005488 -65531771 + MMVL30-int LTR ERV1 382 533 -7023 8 1248 255 79 0 0 chr5 87005524 87005562 -65531697 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 9 1248 4422 98 25 12 chr5 87005835 87006141 -65531118 + MMVL30-int LTR ERV1 772 1071 -2627 8 1248 906 131 0 0 chr5 87006141 87006286 -65530973 + (GGA)n Simple_repeat Simple_repeat 2 146 0 1 1248 4422 98 25 12 chr5 87006286 87006652 -65530607 + MMVL30-int LTR ERV1 1072 1452 -2246 8 1248 431 168 10 10 chr5 87006737 87006839 -65530420 + MMVL30-int LTR ERV1 1029 1130 -2169 1 1248 377 70 0 0 chr5 87006832 87006889 -65530370 + MMVL30-int LTR ERV1 1455 1511 -2187 1 1248 351 0 0 0 chr5 87006986 87007025 -65530234 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1248 390 21 0 0 chr5 87007025 87007071 -65530188 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1248 15287 76 26 7 chr5 87007214 87009372 -65527887 + MMVL30-int LTR ERV1 1501 3698 0 1 1248 2892 121 110 36 chr5 87009372 87009911 -65527348 + RLTR1D LTR ERV1 1 589 -16 1 1248 695 278 58 8 chr5 87009944 87010187 -65527072 + Lx7 LINE L1 5600 5854 -1842 1 1248 2685 180 60 51 chr5 87010320 87011226 -65526033 + RLTR13D1 LTR ERVK 1 855 0 1 1248 3165 118 2 21 chr5 87012298 87012811 -65524448 - Lx3A LINE L1 -48 6933 6431 1 1248 591 15 0 0 chr5 87013226 87013294 -65523965 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1248 297 0 0 0 chr5 87013294 87013326 -65523933 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1248 24 0 0 0 chr5 87014213 87014237 -65523022 + AT_rich Low_complexity Low_complexity 1 24 0 1 1248 296 295 0 0 chr5 87014881 87014959 -65522300 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 1248 22 35 0 0 chr5 87015313 87015342 -65521917 + AT_rich Low_complexity Low_complexity 1 29 0 2 1248 263 164 16 0 chr5 87017195 87017256 -65520003 + CT-rich Low_complexity Low_complexity 2 63 0 2 1248 211 234 0 21 chr5 87017400 87017448 -65519811 + GA-rich Low_complexity Low_complexity 4 50 0 2 1248 264 333 13 0 chr5 87021466 87021544 -65515715 + ID4_ SINE ID 5 83 0 2 1248 784 115 23 17 chr5 87021548 87021725 -65515534 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 2 1248 216 130 0 0 chr5 87021740 87021786 -65515473 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 2 1248 444 156 23 0 chr5 87021795 87021923 -65515336 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 2 1248 996 38 31 19 chr5 87021939 87022098 -65515161 + (TAGA)n Simple_repeat Simple_repeat 4 164 0 2 1248 5791 38 0 0 chr5 87022404 87023160 -65514099 + L1Md_T LINE L1 2705 3460 -2423 2 1248 33877 35 0 0 chr5 87023159 87028821 -65508438 + L1Md_T LINE L1 1 5589 -297 2 1248 9018 6 0 0 chr5 87028821 87029817 -65507442 + L1Md_T LINE L1 5590 6585 0 2 19 17399 22 2 1 chr5 87029820 87031957 -65505302 + L1Md_T LINE L1 3446 5586 -297 2 1249 8406 32 3 0 chr5 87031957 87032947 -65504312 + L1Md_T LINE L1 5587 6579 -3 2 1249 621 40 0 0 chr5 87033092 87033168 -65504091 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 3 1249 531 294 24 0 chr5 87033707 87033833 -65503426 + RSINE1 SINE B4 8 136 -29 3 1249 591 40 0 0 chr5 87033862 87033936 -65503323 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1249 225 354 0 0 chr5 87034420 87034502 -65502757 + (TATG)n Simple_repeat Simple_repeat 1 82 0 3 1249 246 62 0 0 chr5 87034508 87034540 -65502719 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 3 1249 2289 221 32 9 chr5 87034622 87035196 -65502063 + Lx3C LINE L1 6406 7000 0 3 1249 673 254 80 30 chr5 87035196 87035395 -65501864 - B4 SINE B4 -79 213 5 3 1249 544 286 98 10 chr5 87035419 87035613 -65501646 - B3 SINE B2 -5 211 1 3 1249 748 257 128 33 chr5 87035988 87036353 -65500906 - L1_Mur3 LINE L1 -1837 4043 3641 3 1249 591 103 0 0 chr5 87036353 87036450 -65500809 + (TG)n Simple_repeat Simple_repeat 2 98 0 3 1249 748 257 128 33 chr5 87036450 87036475 -65500784 - L1_Mur3 LINE L1 -2240 3640 3616 3 1249 381 256 188 45 chr5 87036513 87036758 -65500501 - L1M2 LINE L1 -2792 3351 3072 4 1249 4056 55 0 2 chr5 87037334 87037863 -65499396 + L1Md_F2 LINE L1 5058 5585 -298 4 1249 7675 45 25 7 chr5 87037864 87038838 -65498421 + L1Md_F2 LINE L1 5587 6577 -5 4 1249 414 223 0 8 chr5 87039048 87039179 -65498080 + Lx9 LINE L1 7507 7636 -8 4 1249 21 0 0 0 chr5 87039179 87039200 -65498059 + AT_rich Low_complexity Low_complexity 1 21 0 4 1249 940 317 35 23 chr5 87039757 87040230 -65497029 + Lx8 LINE L1 6029 6506 -967 4 1249 978 299 135 17 chr5 87040207 87040629 -65496630 + Lx8 LINE L1 6993 7464 -9 4 1249 288 299 0 0 chr5 87040828 87040895 -65496364 - ID4_ SINE ID -14 69 3 4 1249 347 315 69 8 chr5 87040918 87041049 -65496210 - B1F SINE Alu -7 142 4 4 1249 1376 52 4 33 chr5 87041093 87041337 -65495922 + (TAGA)n Simple_repeat Simple_repeat 1 236 0 4 1249 1752 228 78 3 chr5 87041351 87041738 -65495521 + MTD LTR MaLR 4 419 0 4 1249 183 129 0 0 chr5 87041745 87041776 -65495483 + (CAGA)n Simple_repeat Simple_repeat 3 33 0 4 1249 318 276 18 41 chr5 87042255 87042425 -65494834 + GA-rich Low_complexity Low_complexity 4 169 0 5 1249 30846 133 15 15 chr5 87042969 87044720 -65492539 + L1Md_F2 LINE L1 274 1967 -3916 5 1249 216 0 0 0 chr5 87044720 87044744 -65492515 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1249 30846 70 6 1 chr5 87044744 87048338 -65488921 + L1Md_F2 LINE L1 1968 5584 -299 5 1249 8017 50 0 1 chr5 87048339 87049323 -65487936 + L1Md_F2 LINE L1 5587 6569 -13 5 1249 228 214 0 0 chr5 87049333 87049389 -65487870 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 5 1249 271 290 10 79 chr5 87050112 87050213 -65487046 + B4A SINE B4 198 291 -1 5 1249 2480 325 45 17 chr5 87050606 87051734 -65485525 + Lx8 LINE L1 6103 7262 -211 5 1249 250 244 42 56 chr5 87052035 87052178 -65485081 + Charlie7 DNA MER1_type 2437 2577 -35 5 1249 22 0 0 0 chr5 87052208 87052230 -65485029 + AT_rich Low_complexity Low_complexity 1 22 0 5 1249 9055 94 8 36 chr5 87052395 87053715 -65483544 + L1_Mus2 LINE L1 4466 5741 -142 5 1249 902 96 0 7 chr5 87053715 87053851 -65483408 + (GAAAA)n Simple_repeat Simple_repeat 2 136 0 5 1249 9055 70 6 12 chr5 87053851 87054680 -65482579 + L1_Mus2 LINE L1 5742 6564 -2 5 1249 259 293 12 47 chr5 87055784 87055870 -65481389 + MTEb LTR MaLR 280 362 -17 6 1249 273 335 89 22 chr5 87056186 87056366 -65480893 + MIRb SINE MIR 60 251 -17 6 1249 321 338 95 6 chr5 87057024 87057182 -65480077 + MER97c DNA MER1_type? 8 179 -911 6 1249 557 298 40 0 chr5 87057346 87057470 -65479789 - RSINE1 SINE B4 -4 161 33 6 1249 252 23 0 22 chr5 87059042 87059087 -65478172 + L1Md_F3 LINE L1 6539 6582 -2 6 1249 369 239 12 6 chr5 87059095 87059255 -65478004 + (TA)n Simple_repeat Simple_repeat 2 162 0 6 1249 395 282 285 13 chr5 87060392 87060697 -65476562 - Charlie1a DNA MER1_type -547 908 521 6 1249 271 369 139 6 chr5 87060900 87061080 -65476179 - Charlie1a DNA MER1_type -1251 204 1 6 1249 508 301 85 14 chr5 87061907 87062119 -65475140 - Lx8 LINE L1 -8 7465 7239 6 1249 297 319 125 8 chr5 87062510 87062750 -65474509 + L2 LINE L2 2185 2452 -967 6 1249 231 316 150 16 chr5 87063162 87063355 -65473904 + L1MD3 LINE L1 6613 6831 -1164 6 1249 2784 83 10 11 chr5 87063302 87063722 -65473537 - L1_Mus4 LINE L1 -480 6517 5760 7 1249 3322 108 0 16 chr5 87063722 87064214 -65473045 + L1_Mus4 LINE L1 6151 6634 -2 7 1249 459 394 127 44 chr5 87064487 87065119 -65472140 - LTR81B LTR ERV1? -402 991 308 7 1249 661 303 5 33 chr5 87065267 87065451 -65471808 + B3 SINE B2 8 186 -30 7 1249 356 312 0 0 chr5 87065455 87065567 -65471692 + (CA)n Simple_repeat Simple_repeat 1 112 0 7 1249 186 358 105 0 chr5 87066566 87066661 -65470598 - MIRb SINE MIR -104 164 60 7 1249 257 94 38 0 chr5 87067698 87067751 -65469508 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 7 1249 25 65 0 0 chr5 87067975 87068021 -65469238 + AT_rich Low_complexity Low_complexity 1 46 0 7 1249 2750 50 9 0 chr5 87068147 87068484 -65468775 - L1_Mus2 LINE L1 -1 6565 6226 7 1249 303 280 67 0 chr5 87068488 87068563 -65468696 - B1F SINE Alu -15 134 55 7 1249 28 71 0 0 chr5 87069085 87069141 -65468118 + AT_rich Low_complexity Low_complexity 1 56 0 8 1249 315 0 0 0 chr5 87069141 87069176 -65468083 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1249 216 0 0 0 chr5 87069176 87069199 -65468060 + (TA)n Simple_repeat Simple_repeat 2 25 0 8 1249 436 250 19 0 chr5 87069209 87069313 -65467946 + PB1D10 SINE Alu 12 117 0 8 1249 1841 212 8 13 chr5 87069454 87069827 -65467432 - RLTR14 LTR ERV1 0 382 12 8 1249 193 297 64 32 chr5 87069859 87069953 -65467306 - MIRb SINE MIR -7 261 165 8 1249 382 280 51 40 chr5 87070023 87070198 -65467061 + Lx8 LINE L1 6911 7087 -386 8 1249 385 296 18 36 chr5 87070172 87070337 -65466922 + Lx8 LINE L1 7297 7458 -15 8 1249 284 236 0 27 chr5 87070502 87070576 -65466683 + CT-rich Low_complexity Low_complexity 1 72 0 8 1249 1050 98 12 12 chr5 87070617 87070783 -65466476 + L1_Mus3 LINE L1 6473 6638 0 8 1249 188 122 24 0 chr5 87070830 87070871 -65466388 + (TTG)n Simple_repeat Simple_repeat 1 42 0 8 1249 21 0 0 0 chr5 87070905 87070926 -65466333 + AT_rich Low_complexity Low_complexity 1 21 0 9 1249 439 299 0 65 chr5 87070990 87071176 -65466083 - L1MC3 LINE L1 -210 7575 7402 9 1249 252 313 156 6 chr5 87073330 87073497 -65463762 - L2a LINE L2 -9 3417 3226 9 1249 256 302 167 21 chr5 87073969 87074155 -65463104 - MIR SINE MIR -26 236 24 9 1249 1114 42 0 14 chr5 87075084 87075228 -65462031 - B1_Mm SINE Alu 0 147 6 9 1249 399 191 0 125 chr5 87075121 87075241 -65462018 - MT2B LTR ERVL -337 264 160 9 1249 33 25 0 0 chr5 87075625 87075665 -65461594 + AT_rich Low_complexity Low_complexity 1 40 0 9 1249 279 0 0 0 chr5 87075746 87075777 -65461482 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1249 203 194 0 0 chr5 87076610 87076646 -65460613 + T-rich Low_complexity Low_complexity 1 36 0 9 1249 814 211 87 0 chr5 87077192 87077377 -65459882 + B3 SINE B2 2 202 -14 9 1249 201 176 0 0 chr5 87077377 87077411 -65459848 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1 1249 5041 43 3 3 chr5 87077702 87078328 -65458931 + L1Md_F2 LINE L1 5957 6582 0 1 1249 249 33 0 0 chr5 87079828 87079858 -65457401 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1249 219 69 0 0 chr5 87079858 87079887 -65457372 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1249 6096 194 114 32 chr5 87080104 87081006 -65456253 - L1VL2 LINE L1 -2593 3293 2356 1 1249 2749 50 0 83 chr5 87081006 87081401 -65455858 - L1Md_F2 LINE L1 -12 6570 6209 1 1249 6096 177 97 27 chr5 87081401 87082468 -65454791 - L1VL2 LINE L1 -3531 2355 1166 1 1249 405 0 0 0 chr5 87082468 87082513 -65454746 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1249 5516 89 12 3 chr5 87082513 87083090 -65454169 - L1VL2 LINE L1 -5469 1165 581 1 1249 491 287 56 108 chr5 87083237 87083432 -65453827 - MTE2a LTR MaLR -128 251 67 1 1249 3318 179 17 51 chr5 87083586 87084293 -65452966 + Lx4B LINE L1 6372 7054 -4 1 1249 3838 34 0 0 chr5 87085871 87086317 -65450942 - L1Md_F2 LINE L1 -258 6324 5879 1 1249 1761 44 4 9 chr5 87086317 87086548 -65450711 + L1Md_F2 LINE L1 6353 6582 0 1 1249 34 24 0 0 chr5 87087212 87087253 -65450006 + AT_rich Low_complexity Low_complexity 1 41 0 1 1249 1381 101 9 9 chr5 87087675 87087895 -65449364 - L1_Mus3 LINE L1 0 6638 6419 1 1249 2650 116 3 0 chr5 87087895 87088284 -65448975 + L1_Mm LINE L1 4683 5072 -811 1 1249 615 259 82 0 chr5 87088877 87089024 -65448235 + B3 SINE B2 10 168 -48 1 1249 231 341 113 58 chr5 87089067 87089341 -65447918 + B4A SINE B4 4 292 0 1 1249 261 224 0 0 chr5 87089347 87089405 -65447854 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1249 297 0 0 0 chr5 87090135 87090168 -65447091 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1249 215 82 0 103 chr5 87090175 87090243 -65447016 + (TATAA)n Simple_repeat Simple_repeat 2 62 0 1 1249 408 304 27 0 chr5 87090243 87090355 -65446904 + MIR SINE MIR 105 219 -43 1 1249 722 262 70 20 chr5 87091622 87091821 -65445438 - B3 SINE B2 -7 209 1 1 1249 405 0 0 0 chr5 87092728 87092773 -65444486 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1249 333 0 0 0 chr5 87092773 87092809 -65444450 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1249 461 76 45 0 chr5 87092872 87092938 -65444321 - B2_Mm2 SINE B2 -14 181 113 1 1249 1159 139 0 5 chr5 87092948 87093136 -65444123 - B2_Mm2 SINE B2 -7 188 2 1 1249 203 394 40 46 chr5 87094411 87094584 -65442675 - L2b LINE L2 -7 3368 3197 1 1249 196 419 57 13 chr5 87095712 87095869 -65441390 - MIRc SINE MIR -45 223 60 1 1249 436 286 58 69 chr5 87096888 87097155 -65440104 - B4 SINE B4 -17 275 48 1 1249 1730 178 26 6 chr5 87097165 87097476 -65439783 + ORR1A1 LTR MaLR 1 317 -29 1 1249 1745 62 0 0 chr5 87097477 87097719 -65439540 - L1_Mur1 LINE L1 -2503 3383 3142 1 1249 1192 120 52 14 chr5 87097735 87097946 -65439313 + Lx3_Mus LINE L1 6791 7009 0 1 1249 1194 116 57 14 chr5 87098001 87098211 -65439048 + Lx3_Mus LINE L1 6791 7009 0 1 1249 330 146 0 0 chr5 87098235 87098290 -65438969 + ORR1A1 LTR MaLR 272 326 0 1 1249 432 0 0 0 chr5 87098656 87098704 -65438555 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1249 1529 257 35 20 chr5 87098736 87099263 -65437996 + Lx9 LINE L1 5393 5962 -1682 1 1249 366 268 18 61 chr5 87099253 87099416 -65437843 + Lx9 LINE L1 6957 7112 -532 1 1249 1759 227 41 47 chr5 87099447 87099933 -65437326 + Lx7 LINE L1 7096 7578 -118 1 1249 431 319 56 75 chr5 87099993 87100420 -65436839 + Lx9 LINE L1 7226 7644 0 1 1249 578 329 0 6 chr5 87101060 87101225 -65436034 + RSINE1 SINE B4 2 165 0 1 1249 514 188 32 47 chr5 87101778 87101968 -65435291 + RMER17C LTR ERVK 89 275 -135 1 1249 318 180 0 0 chr5 87101968 87102029 -65435230 + A-rich Low_complexity Low_complexity 1 61 0 1 1249 183 42 0 0 chr5 87102868 87102892 -65434367 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1249 29 47 0 0 chr5 87104771 87104814 -65432445 + AT_rich Low_complexity Low_complexity 1 43 0 1 1249 236 272 111 53 chr5 87106116 87106306 -65430953 - L2a LINE L2 -112 3314 3114 1 1249 795 326 19 0 chr5 87106380 87106595 -65430664 + B4A SINE B4 5 223 -69 1 1249 194 62 31 0 chr5 87106827 87106859 -65430400 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1 1249 524 241 92 28 chr5 87106865 87107006 -65430253 - B1_Mur4 SINE Alu 0 150 1 1 1249 219 302 61 61 chr5 87107271 87107419 -65429840 + L2c LINE L2 3236 3383 -4 1 1249 779 248 97 5 chr5 87107701 87107896 -65429363 + B3 SINE B2 4 216 0 1 1249 534 266 0 0 chr5 87107930 87108043 -65429216 + ID_B1 SINE B4 111 223 -1 1 1249 1310 120 16 0 chr5 87108303 87108495 -65428764 + B2_Mm2 SINE B2 1 195 0 1 1249 289 340 10 31 chr5 87108572 87108669 -65428590 + LTR33B LTR ERVL 32 126 -377 1 1249 561 68 0 0 chr5 87109037 87109111 -65428148 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 1 1249 497 149 9 0 chr5 87109128 87109242 -65428017 + CT-rich Low_complexity Low_complexity 2 116 0 1 1249 603 0 0 0 chr5 87109243 87109310 -65427949 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1249 6096 153 15 10 chr5 87109316 87110636 -65426623 - Lx2B LINE L1 -321 6679 5340 1 1249 791 234 6 17 chr5 87110636 87110814 -65426445 + Lx4B LINE L1 6165 6340 -718 1 1249 447 336 88 74 chr5 87110836 87110924 -65426335 - Lx7 LINE L1 -1181 6292 6203 1 1249 545 0 15 0 chr5 87110924 87110989 -65426270 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1249 1053 283 75 67 chr5 87110989 87111847 -65425412 - Lx7 LINE L1 -1271 6202 5294 1 1249 7263 26 0 0 chr5 87111841 87112721 -65424538 - L1Md_F2 LINE L1 0 6582 5703 1 1249 201 39 0 0 chr5 87112827 87112853 -65424406 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1249 247 281 94 0 chr5 87112856 87112984 -65424275 - Lx7 LINE L1 -599 5248 5109 1 1249 633 280 9 50 chr5 87113766 87113988 -65423271 + B3 SINE B2 3 215 -1 1 1249 2981 101 55 0 chr5 87114281 87114758 -65422501 + L1_Mus3 LINE L1 6113 6615 -23 1 1249 33830 44 0 3 chr5 87114757 87119927 -65417332 + L1Md_T LINE L1 338 5589 -297 1 1249 8527 30 0 0 chr5 87119927 87120923 -65416336 + L1Md_T LINE L1 5590 6585 0 1 1249 2009 111 45 79 chr5 87121241 87121647 -65415612 - RLTR9F LTR ERVK -45 370 1 1 1249 23 86 0 0 chr5 87121997 87122055 -65415204 + AT_rich Low_complexity Low_complexity 1 58 0 1 1249 710 280 19 5 chr5 87123479 87123687 -65413572 - ID_B1 SINE B4 -11 213 3 1 1249 871 290 45 8 chr5 87124381 87124628 -65412631 - B4A SINE B4 -35 257 2 1 1249 1288 132 132 4 chr5 87124648 87124795 -65412464 + Lx LINE L1 6363 6518 -136 1 1249 189 0 0 0 chr5 87124795 87124816 -65412443 + (TGGG)n Simple_repeat Simple_repeat 1 21 0 1 1249 1288 132 132 4 chr5 87124816 87124918 -65412341 + Lx LINE L1 6519 6643 -11 1 1249 195 69 0 0 chr5 87124918 87124947 -65412312 + (TTAAA)n Simple_repeat Simple_repeat 3 31 0 1 1249 289 337 97 19 chr5 87124951 87125054 -65412205 + PB1D10 SINE Alu 1 111 -6 1 1249 29049 12 0 0 chr5 87125330 87128820 -65408439 + L1Md_A LINE L1 2098 5586 -297 1 1249 8632 19 5 0 chr5 87128820 87129811 -65407448 + L1Md_A LINE L1 5587 6582 0 1 1249 275 224 0 0 chr5 87129838 87129887 -65407372 + B1_Mus2 SINE Alu 6 54 -93 1 1249 275 299 85 39 chr5 87129924 87130206 -65407053 - L1M5 LINE L1 -2231 3915 3621 1 1249 369 165 16 8 chr5 87130237 87130359 -65406900 + (TA)n Simple_repeat Simple_repeat 1 123 0 1 1249 3301 90 18 29 chr5 87130561 87131052 -65406207 - L1_Mus4 LINE L1 -7 6629 6144 1 1249 1131 88 86 17 chr5 87131364 87131538 -65405721 - B2_Mm2 SINE B2 -9 186 1 1 1249 653 309 17 86 chr5 87132134 87132368 -65404891 - ID_B1 SINE B4 0 224 7 1 1249 309 109 0 0 chr5 87132489 87132535 -65404724 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1249 769 228 0 0 chr5 87132583 87132732 -65404527 - B1_Mur4 SINE Alu 0 150 2 1 1249 475 97 0 0 chr5 87132762 87132834 -65404425 + Lx2 LINE L1 6917 6988 -9 1 1249 189 0 0 0 chr5 87132834 87132855 -65404404 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1 1249 234 128 0 0 chr5 87132993 87133032 -65404227 + (ATG)n Simple_repeat Simple_repeat 3 41 0 1 1249 233 57 29 0 chr5 87133696 87133731 -65403528 + (TTTTG)n Simple_repeat Simple_repeat 4 39 0 1 1249 180 97 0 0 chr5 87134179 87134210 -65403049 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1249 750 203 111 79 chr5 87134218 87134470 -65402789 - Lx9 LINE L1 -42 7602 7343 1 1249 482 316 45 28 chr5 87134475 87134651 -65402608 - B3A SINE B2 -17 181 3 1 1249 253 333 24 0 chr5 87136766 87136850 -65400409 + B3A SINE B2 13 98 -100 1 1249 376 281 121 74 chr5 87136877 87136962 -65400297 + L1MDa LINE L1 1882 1966 -4667 1 1249 278 20 38 38 chr5 87136962 87137015 -65400244 + (CAA)n Simple_repeat Simple_repeat 2 54 0 1 1249 376 281 121 74 chr5 87137015 87137443 -65399816 + L1MDa LINE L1 1967 2419 -4214 1 1249 348 356 150 10 chr5 87137449 87137656 -65399603 + L1MD2 LINE L1 5906 6141 -218 1 1249 458 304 12 24 chr5 87137768 87137933 -65399326 + RSINE1 SINE B4 3 165 0 1 1249 1381 192 23 0 chr5 87137962 87138228 -65399031 + Lx5 LINE L1 6779 7050 0 1 1249 387 0 0 0 chr5 87138584 87138627 -65398632 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1249 225 0 0 0 chr5 87138656 87138681 -65398578 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1249 784 182 15 0 chr5 87138684 87138816 -65398443 - B1_Mur4 SINE Alu -12 138 5 1 1249 536 287 8 37 chr5 87139025 87139159 -65398100 + B4A SINE B4 84 213 -79 1 1249 285 277 34 110 chr5 87139046 87139161 -65398098 + B1F2 SINE Alu 15 119 -30 1 1249 1082 76 0 65 chr5 87139161 87139316 -65397943 + B1_Mus2 SINE Alu 1 145 -2 1 1249 207 0 0 0 chr5 87139316 87139339 -65397920 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1249 285 277 34 110 chr5 87139339 87139368 -65397891 + B1F2 SINE Alu 120 148 -1 1 1249 1618 158 7 0 chr5 87139373 87139652 -65397607 + Lx6 LINE L1 5456 5736 -141 1 1249 720 150 25 0 chr5 87139652 87139772 -65397487 + B1_Mur4 SINE Alu 28 150 0 1 1249 486 94 26 70 chr5 87139789 87139903 -65397356 + L1Md_F2 LINE L1 6474 6582 0 1 1249 798 98 0 0 chr5 87140206 87140328 -65396931 + (GGGAA)n Simple_repeat Simple_repeat 4 125 0 2 1249 1669 213 106 27 chr5 87140334 87140443 -65396816 + Lx6 LINE L1 5723 5823 -1637 1 1249 270 0 0 0 chr5 87140443 87140473 -65396786 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2 1249 1669 253 89 40 chr5 87140473 87141412 -65395847 + Lx6 LINE L1 5824 6900 -560 1 1249 3024 17 0 6 chr5 87141417 87141765 -65395494 + ORR1A0 LTR MaLR 1 346 0 2 1249 487 316 0 0 chr5 87141805 87141957 -65395302 - Lx6 LINE L1 -731 6729 6578 2 1249 979 227 83 16 chr5 87141964 87142206 -65395053 + Lx6 LINE L1 7177 7434 -26 1 1249 253 219 13 64 chr5 87142241 87142319 -65394940 + B4A SINE B4 214 287 -5 2 1249 710 77 0 0 chr5 87142562 87142653 -65394606 - B2_Mm2 SINE B2 -103 92 2 2 1249 2727 66 0 0 chr5 87143321 87143687 -65393572 - L1_Mus3 LINE L1 -226 6412 6047 2 1249 1097 111 26 0 chr5 87143687 87143876 -65393383 + L1_Mus3 LINE L1 6439 6632 -6 2 1249 262 344 57 19 chr5 87145440 87145482 -65391777 - B2_Mm2 SINE B2 -22 173 126 2 1249 695 101 8 0 chr5 87145482 87145601 -65391658 + (TG)n Simple_repeat Simple_repeat 1 120 0 2 1249 262 344 57 19 chr5 87145601 87145715 -65391544 - B2_Mm2 SINE B2 -70 125 12 2 1249 634 241 0 0 chr5 87145602 87145718 -65391541 - RSINE1 SINE B4 -41 124 9 2 1249 32 43 0 0 chr5 87146723 87146769 -65390490 + AT_rich Low_complexity Low_complexity 1 46 0 2 1249 263 14 92 66 chr5 87146779 87146855 -65390404 + (TATAA)n Simple_repeat Simple_repeat 2 79 0 2 1249 1506 341 50 14 chr5 87147380 87147965 -65389294 + MER45B DNA Tip100 46 651 -389 2 1249 511 309 105 10 chr5 87147944 87148153 -65389106 - MER2 DNA MER2_type -20 325 97 2 1249 234 343 0 0 chr5 87148931 87149001 -65388258 + GA-rich Low_complexity Low_complexity 3 72 0 2 1249 319 301 52 31 chr5 87149814 87149910 -65387349 + PB1D10 SINE Alu 18 115 -2 2 1249 1115 144 119 0 chr5 87150536 87150737 -65386522 - URR1B DNA MER1_type 0 225 1 2 1249 250 333 32 97 chr5 87151029 87151215 -65386044 - ORR1D2 LTR MaLR -13 357 184 2 1249 659 46 11 0 chr5 87151530 87151617 -65385642 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 2 1249 252 298 47 19 chr5 87152066 87152172 -65385087 + MLT1A LTR MaLR 65 173 -201 2 1249 213 316 58 36 chr5 87152382 87152520 -65384739 - MIR3 SINE MIR -15 193 53 2 1249 263 324 30 120 chr5 87156512 87156712 -65380547 + MIR SINE MIR 44 225 -37 2 1249 255 61 0 0 chr5 87157187 87157220 -65380039 + (CTTTG)n Simple_repeat Simple_repeat 2 34 0 2 1249 195 184 0 0 chr5 87158577 87158615 -65378644 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1249 785 354 34 12 chr5 87159984 87160307 -65376952 - MER58B DNA MER1_type 0 341 12 2 1249 1386 79 5 5 chr5 87160658 87160848 -65376411 + B2_Mm2 SINE B2 2 191 -4 2 1249 408 181 0 0 chr5 87161454 87161537 -65375722 + GA-rich Low_complexity Low_complexity 3 85 0 2 1249 1067 246 56 8 chr5 87161621 87161822 -65375437 + B4A SINE B4 10 218 -74 2 1249 315 0 0 0 chr5 87161822 87161857 -65375402 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 1249 1067 246 56 8 chr5 87161857 87161921 -65375338 + B4A SINE B4 219 286 -6 2 1249 724 248 7 0 chr5 87162005 87162146 -65375113 + B1_Mus1 SINE Alu 7 148 0 2 1249 1915 164 128 13 chr5 87162373 87162749 -65374510 + MTC LTR MaLR 1 419 -2 2 156 821 284 45 0 chr5 87162794 87162970 -65374289 - B3 SINE B2 -30 186 3 2 1250 288 0 0 0 chr5 87163382 87163414 -65373845 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1250 1100 97 0 0 chr5 87163484 87163629 -65373630 + B1_Mus2 SINE Alu 2 146 -1 2 1250 291 28 0 0 chr5 87163629 87163665 -65373594 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 2 1250 225 31 0 0 chr5 87163683 87163715 -65373544 + B1_Mus2 SINE Alu 114 145 -2 2 1250 315 0 0 0 chr5 87163715 87163750 -65373509 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2 1250 21 36 0 0 chr5 87165272 87165300 -65371959 + AT_rich Low_complexity Low_complexity 1 28 0 2 1250 219 337 63 0 chr5 87166106 87166201 -65371058 + L2 LINE L2 2304 2404 -1015 2 1250 2042 154 71 22 chr5 87166517 87166883 -65370376 + ORR1B1 LTR MaLR 3 386 -8 2 1250 220 133 0 62 chr5 87166915 87166963 -65370296 + GA-rich Low_complexity Low_complexity 4 48 0 2 1250 253 390 68 19 chr5 87167032 87167194 -65370065 + MLT1J LTR MaLR 254 423 -89 2 1250 191 61 30 0 chr5 87167695 87167728 -65369531 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 2 1250 1125 156 102 8 chr5 87167730 87167976 -65369283 - Lx3C LINE L1 0 6976 6708 2 1250 514 319 123 38 chr5 87167983 87168539 -65368720 - L1MEf LINE L1 -3399 3138 2536 2 1250 649 239 15 0 chr5 87168612 87168742 -65368517 - RSINE1 SINE B4 -31 134 3 2 1250 239 191 0 0 chr5 87168751 87168798 -65368461 - L1MEf LINE L1 -4074 2559 2513 2 1250 305 256 37 0 chr5 87168821 87168903 -65368356 - L1MEf LINE L1 -4464 2169 2085 2 1250 211 404 44 31 chr5 87168975 87169200 -65368059 + MIRb SINE MIR 27 254 -14 2 1250 188 204 0 22 chr5 87169880 87169925 -65367334 + MIRc SINE MIR 173 216 -52 2 1250 610 263 36 14 chr5 87169976 87170196 -65367063 + L1MA8 LINE L1 6038 6262 -29 2 1250 289 337 91 34 chr5 87170600 87170771 -65366488 + MIR SINE MIR 5 193 -75 2 1250 516 32 0 0 chr5 87173408 87173470 -65363789 + (TAG)n Simple_repeat Simple_repeat 1 62 0 2 1250 378 0 0 0 chr5 87174186 87174228 -65363031 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1250 227 350 0 0 chr5 87174229 87174289 -65362970 - ID2 SINE ID -11 72 13 2 1250 184 286 20 0 chr5 87175143 87175192 -65362067 - MIRm SINE MIR -129 147 98 2 1250 633 245 2 21 chr5 87175933 87176098 -65361161 + Lx7 LINE L1 6941 7116 -357 2 1250 23 0 0 0 chr5 87176132 87176155 -65361104 + AT_rich Low_complexity Low_complexity 1 23 0 2 1250 963 264 12 77 chr5 87176401 87176660 -65360599 + B4A SINE B4 51 292 0 2 1250 1255 114 5 25 chr5 87176906 87177104 -65360155 - B2_Mm2 SINE B2 0 195 2 2 1250 298 318 0 0 chr5 87177829 87177895 -65359364 + RSINE1 SINE B4 8 73 -92 2 1250 257 341 72 22 chr5 87177949 87178087 -65359172 - L4 LINE RTE -136 1893 1749 2 1250 430 358 44 14 chr5 87178673 87178986 -65358273 + MER47B DNA MER2_type 38 417 -1 2 1250 34 42 0 0 chr5 87179035 87179083 -65358176 + AT_rich Low_complexity Low_complexity 1 48 0 2 1250 219 65 71 51 chr5 87179136 87179234 -65358025 + (TA)n Simple_repeat Simple_repeat 1 100 0 2 1250 243 0 0 0 chr5 87179493 87179520 -65357739 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1250 513 0 0 0 chr5 87179520 87179576 -65357683 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 1250 4227 76 5 7 chr5 87179603 87180186 -65357073 - L1_Mur1 LINE L1 0 5886 5305 2 1250 1062 101 63 0 chr5 87180423 87180582 -65356677 + B2_Mm2 SINE B2 1 169 -26 2 1250 297 0 0 0 chr5 87180746 87180779 -65356480 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2 1250 1190 74 0 0 chr5 87180797 87180945 -65356314 - B1_Mus1 SINE Alu 0 148 1 2 1250 1597 125 55 41 chr5 87180953 87181239 -65356020 - Lx2 LINE L1 0 6997 6707 2 1250 910 159 0 0 chr5 87181239 87181377 -65355882 - B1_Mus1 SINE Alu -7 141 4 2 1250 1226 98 38 5 chr5 87181526 87181710 -65355549 + B2_Mm2 SINE B2 6 195 0 2 1250 248 333 0 0 chr5 87181840 87181927 -65355332 + Lx8 LINE L1 7204 7290 -183 2 1250 198 143 0 0 chr5 87181949 87181984 -65355275 + (ATG)n Simple_repeat Simple_repeat 3 37 0 2 1250 1020 187 23 39 chr5 87182005 87182261 -65354998 - Lx7 LINE L1 0 7696 7445 2 1250 1429 143 12 20 chr5 87182296 87182545 -65354714 + MTC LTR MaLR 170 416 -5 2 1250 2221 191 13 17 chr5 87182550 87183019 -65354240 - Lx7 LINE L1 -535 7161 6695 2 1250 1797 236 77 8 chr5 87183019 87183400 -65353859 + Lx7 LINE L1 5799 6214 -1482 2 1250 351 0 0 0 chr5 87183400 87183439 -65353820 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1250 1797 236 77 8 chr5 87183439 87183553 -65353706 + Lx7 LINE L1 6215 6327 -1369 2 1250 3459 138 7 166 chr5 87183601 87184433 -65352826 - RMER12 LTR ERVK -622 700 1 2 1250 1624 238 62 0 chr5 87185695 87186036 -65351223 - ORR1D2 LTR MaLR -2 368 7 2 1250 231 140 0 0 chr5 87187172 87187222 -65350037 + (T)n Simple_repeat Simple_repeat 1 50 0 2 1250 1074 109 0 0 chr5 87187222 87187369 -65349890 - B1_Mus2 SINE Alu 0 147 1 2 1250 715 267 28 9 chr5 87187989 87188201 -65349058 - B3 SINE B2 0 216 1 2 1250 4365 82 0 9 chr5 87188994 87189576 -65347683 + L1_Mus2 LINE L1 5990 6566 0 2 1250 630 0 0 0 chr5 87189591 87189661 -65347598 + (GAAA)n Simple_repeat Simple_repeat 4 73 0 2 1250 233 174 113 28 chr5 87190118 87190189 -65347070 + 4.5SRNA scRNA scRNA 10 86 -8 2 1250 776 56 37 0 chr5 87190130 87190237 -65347022 + B1_Mus1 SINE Alu 32 142 -6 2 1250 450 0 0 0 chr5 87190240 87190290 -65346969 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 2 1250 4620 170 83 25 chr5 87190291 87190464 -65346795 - RLTR25B LTR ERVK 0 1028 824 2 1250 687 25 0 0 chr5 87190464 87190545 -65346714 + (TTC)n Simple_repeat Simple_repeat 3 83 0 2 1250 4620 170 83 25 chr5 87190545 87191319 -65345940 - RLTR25B LTR ERVK -205 823 27 2 1250 2009 116 31 50 chr5 87191716 87192134 -65345125 - RMER17C LTR ERVK 0 410 1 2 1250 1125 95 0 0 chr5 87192248 87192395 -65344864 - B1_Mus1 SINE Alu 0 148 2 2 1250 260 265 123 82 chr5 87192907 87193200 -65344059 - RLTR11A LTR ERVK -73 495 176 2 1250 228 281 217 23 chr5 87193215 87193390 -65343869 - RLTR12B LTR ERVK -257 271 63 2 1250 6265 134 30 4 chr5 87194253 87196107 -65341152 + Lx LINE L1 4747 6650 -4 2 1250 1414 84 11 0 chr5 87196302 87196492 -65340767 + B2_Mm1t SINE B2 2 193 0 2 1250 287 236 84 9 chr5 87196581 87196688 -65340571 - L1MA5A LINE L1 -4 6293 6179 2 1250 25 51 0 0 chr5 87198697 87198736 -65338523 + AT_rich Low_complexity Low_complexity 1 39 0 2 1250 1396 62 11 0 chr5 87199281 87199457 -65337802 + B2_Mm1t SINE B2 2 179 -14 2 1250 356 146 164 41 chr5 87199523 87199636 -65337623 + B2_Mm2 SINE B2 47 188 -5 2 1250 782 188 127 16 chr5 87200107 87200296 -65336963 + B3 SINE B2 1 210 -6 3 1250 854 138 22 7 chr5 87200297 87200436 -65336823 + B1_Mus1 SINE Alu 1 141 -7 3 1250 36 91 0 0 chr5 87200436 87200535 -65336724 + AT_rich Low_complexity Low_complexity 1 99 0 3 1250 1036 110 14 0 chr5 87200635 87200780 -65336479 - B1_Mus2 SINE Alu 0 147 1 3 1250 296 330 0 0 chr5 87201045 87201136 -65336123 - RMER15 LTR ERVL -105 470 380 3 1250 1187 267 127 88 chr5 87201489 87202002 -65335257 - RMER5 LTR ERV1 -1 533 1 3 1250 763 102 161 0 chr5 87202472 87202590 -65334669 + B1_Mur4 SINE Alu 1 137 -13 3 1250 286 23 23 23 chr5 87202594 87202638 -65334621 + (TAA)n Simple_repeat Simple_repeat 2 45 0 3 1250 906 214 104 0 chr5 87202664 87202856 -65334403 - Lx5 LINE L1 -308 6742 6531 3 1250 378 0 0 0 chr5 87203146 87203188 -65334071 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1250 309 279 97 91 chr5 87203353 87203507 -65333752 + RSINE1 SINE B4 3 157 -8 3 1250 29 28 0 0 chr5 87203511 87203547 -65333712 + AT_rich Low_complexity Low_complexity 1 36 0 3 1250 186 192 0 148 chr5 87204344 87204405 -65332854 - MIRm SINE MIR -2 274 223 3 1250 459 277 196 64 chr5 87204868 87205134 -65332125 + ORR1D2 LTR MaLR 1 301 -69 3 1250 390 52 0 0 chr5 87205660 87205737 -65331522 + (GAAAA)n Simple_repeat Simple_repeat 1 77 0 3 1250 1107 134 0 0 chr5 87205737 87205916 -65331343 + (GAGAA)n Simple_repeat Simple_repeat 2 180 0 3 1250 887 289 100 26 chr5 87206822 87207173 -65330086 + MTE2b LTR MaLR 1 377 -2 3 1250 367 282 62 21 chr5 87207206 87207351 -65329908 - Lx7 LINE L1 -504 7192 7042 3 1250 779 187 66 0 chr5 87207752 87207918 -65329341 - Lx7 LINE L1 -651 7045 6869 3 1250 2153 293 68 13 chr5 87207975 87208843 -65328416 - Lx8 LINE L1 -132 7341 6426 3 1250 1447 268 71 87 chr5 87209179 87209512 -65327747 - L1_Rod LINE L1 -2 5845 5531 3 1250 503 278 139 0 chr5 87209512 87209656 -65327603 - RSINE1 SINE B4 0 165 2 3 1250 1447 268 71 87 chr5 87209656 87209858 -65327401 - L1_Rod LINE L1 -317 5530 5329 3 1250 2956 62 30 56 chr5 87209858 87210287 -65326972 - L1Md_F2 LINE L1 -3 6579 6162 3 1250 1447 268 71 87 chr5 87210287 87210565 -65326694 - L1_Rod LINE L1 -519 5328 5044 3 1250 211 283 43 0 chr5 87211255 87211301 -65325958 + PB1D9 SINE Alu 1 48 -72 3 1250 614 49 12 0 chr5 87211473 87211555 -65325704 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 3 1250 1756 172 61 20 chr5 87211556 87211948 -65325311 - RMER10A LTR ERVL -30 412 5 3 1250 774 153 116 40 chr5 87212486 87212684 -65324575 - RMER10B LTR ERVL 0 398 186 3 1250 1231 169 66 31 chr5 87212719 87212975 -65324284 - RMER10B LTR ERVL -133 265 1 3 1250 477 0 0 0 chr5 87213245 87213298 -65323961 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1250 417 271 7 21 chr5 87213430 87213573 -65323686 - L1MA6 LINE L1 -96 6204 6064 3 1250 235 237 92 0 chr5 87213583 87213659 -65323600 + L1MA6 LINE L1 6217 6299 -1 3 1250 351 0 0 0 chr5 87213761 87213800 -65323459 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1250 423 0 0 0 chr5 87213800 87213846 -65323413 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1250 471 270 18 68 chr5 87213847 87214010 -65323249 - B4A SINE B4 -22 270 116 3 1250 1142 121 21 21 chr5 87214674 87214868 -65322391 + B2_Mm2 SINE B2 2 195 0 3 1250 432 194 95 21 chr5 87215008 87215103 -65322156 + B1_Mur2 SINE Alu 32 133 -16 3 1250 796 122 14 7 chr5 87215225 87215366 -65321893 + (CATATA)n Simple_repeat Simple_repeat 1 142 0 3 1250 505 282 101 0 chr5 87215366 87215515 -65321744 - RSINE1 SINE B4 0 165 2 3 1250 343 339 18 0 chr5 87215805 87215914 -65321345 - PB1D7 SINE Alu -9 111 1 3 1250 814 168 14 7 chr5 87216326 87216464 -65320795 - B1_Mus2 SINE Alu -3 144 6 3 1250 1461 183 122 85 chr5 87216676 87217074 -65320185 + RMER10A LTR ERVL 1 418 -24 3 1250 1018 110 6 6 chr5 87217074 87217239 -65320020 + (TCTCC)n Simple_repeat Simple_repeat 5 169 0 3 1250 1461 183 122 85 chr5 87217239 87217265 -65319994 + RMER10A LTR ERVL 419 441 -1 3 1250 225 290 0 0 chr5 87217474 87217551 -65319708 + T-rich Low_complexity Low_complexity 1 77 0 3 1250 994 150 22 11 chr5 87217911 87218093 -65319166 - URR1A DNA MER1_type -6 220 37 3 1250 244 286 8 61 chr5 87218101 87218258 -65319001 + GA-rich Low_complexity Low_complexity 1 148 0 3 1250 304 250 40 0 chr5 87218438 87218514 -65318745 - RLTR23 LTR ERV1 -3 427 349 3 1250 564 15 0 0 chr5 87218592 87218657 -65318602 + (TTTC)n Simple_repeat Simple_repeat 3 67 0 3 1250 742 70 10 0 chr5 87218666 87218766 -65318493 - B1_Mus2 SINE Alu -1 146 46 3 1250 642 107 155 0 chr5 87218842 87218945 -65318314 + B1_Mus1 SINE Alu 1 119 -29 3 1250 1116 49 127 12 chr5 87219821 87219987 -65317272 + B2_Mm2 SINE B2 5 189 -6 3 1250 767 112 0 15 chr5 87220115 87220251 -65317008 + L1Md_F2 LINE L1 6449 6582 0 3 1250 2002 126 117 70 chr5 87220350 87220804 -65316455 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1250 432 0 0 0 chr5 87220941 87220989 -65316270 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1250 255 114 0 141 chr5 87221332 87221424 -65315835 - RMER4B LTR ERVK -9 576 498 3 1250 381 178 27 0 chr5 87221407 87221480 -65315779 + MTC LTR MaLR 285 359 -8 3 1250 5646 168 86 25 chr5 87221484 87222669 -65314590 + MTC-int LTR MaLR 1 1258 0 3 1250 2057 186 53 8 chr5 87222669 87223064 -65314195 + MTC LTR MaLR 1 413 -8 3 1250 21 0 0 0 chr5 87223220 87223241 -65314018 + AT_rich Low_complexity Low_complexity 1 21 0 3 1250 748 194 0 21 chr5 87223241 87223383 -65313876 - B1_Mur4 SINE Alu 0 150 12 3 1250 312 245 24 113 chr5 87223279 87223403 -65313856 - MT2B LTR ERVL -337 264 152 3 1250 183 220 0 0 chr5 87223419 87223469 -65313790 + CT-rich Low_complexity Low_complexity 6 55 0 3 1250 286 273 0 13 chr5 87223710 87223788 -65313471 - ID4_ SINE ID -6 77 1 3 1250 342 103 0 17 chr5 87223967 87224026 -65313233 - ORR1B1 LTR MaLR -336 58 1 3 1250 2626 94 152 0 chr5 87224100 87224559 -65312700 - RLTR47_MM LTR ERV1 -3 529 1 3 1250 1132 202 117 4 chr5 87224569 87224817 -65312442 - ORR1D1 LTR MaLR -2 372 97 3 1250 430 218 0 33 chr5 87224862 87224952 -65312307 + ORR1D1 LTR MaLR 1 87 -287 3 1250 2930 154 199 14 chr5 87225656 87226288 -65310971 + RMER6A LTR ERVK 1 749 -7 3 1250 522 243 7 42 chr5 87226365 87226507 -65310752 - B1_Mur2 SINE Alu -11 138 2 3 1250 670 298 40 34 chr5 87226630 87226807 -65310452 - MTEa LTR MaLR -201 178 1 3 1250 2067 197 106 14 chr5 87227174 87227684 -65309575 + Lx9 LINE L1 7062 7618 -26 3 1250 421 269 31 14 chr5 87227742 87227861 -65309398 - B1_Mur2 SINE Alu 0 120 6 3 1250 292 289 47 85 chr5 87227784 87227890 -65309369 - MT2B LTR ERVL -361 240 139 3 1250 1903 54 254 0 chr5 87228261 87228537 -65308722 + ORR1A1 LTR MaLR 1 346 0 3 1250 377 285 106 37 chr5 87228697 87228970 -65308289 - MTEb LTR MaLR -13 366 75 3 1250 2373 137 175 22 chr5 87228970 87229462 -65307797 - RMER15 LTR ERVL 0 575 9 3 1250 4158 108 5 10 chr5 87229473 87230089 -65307170 - Lx2 LINE L1 -1 6996 6384 3 1250 2711 158 70 4 chr5 87230126 87230608 -65306651 + RLTR28 LTR ERVL 1 514 -10 3 1250 790 170 57 0 chr5 87230743 87230884 -65306375 - B1_Mur3 SINE Alu 0 149 1 3 1250 303 308 126 0 chr5 87230941 87231084 -65306175 - L1MC5 LINE L1 -766 7195 7035 3 1250 655 189 33 0 chr5 87231427 87231549 -65305710 - B1_Mur4 SINE Alu -19 131 6 3 1250 258 56 0 0 chr5 87232039 87232075 -65305184 + (TCTG)n Simple_repeat Simple_repeat 4 39 0 3 1250 719 217 22 0 chr5 87232075 87232213 -65305046 - B1_Mus1 SINE Alu -7 141 1 3 1250 204 261 0 0 chr5 87232243 87232289 -65304970 + T-rich Low_complexity Low_complexity 1 46 0 3 1250 717 175 13 40 chr5 87232290 87232439 -65304820 - B1_Mus2 SINE Alu -1 146 2 3 1250 737 151 12 88 chr5 87232528 87232688 -65304571 - B1_Mur4 SINE Alu -1 149 2 3 1250 22 35 0 0 chr5 87232755 87232784 -65304475 + AT_rich Low_complexity Low_complexity 1 29 0 3 1250 1169 61 0 0 chr5 87232789 87232936 -65304323 + B1_Mus1 SINE Alu 1 147 -1 3 1250 207 139 0 0 chr5 87233153 87233189 -65304070 + (CCCCCG)n Simple_repeat Simple_repeat 3 38 0 3 1250 195 42 0 0 chr5 87233548 87233572 -65303687 + (CGG)n Simple_repeat Simple_repeat 1 24 0 3 1250 192 40 0 0 chr5 87234118 87234143 -65303116 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1250 623 182 95 0 chr5 87234608 87234734 -65302525 - B1_Mur4 SINE Alu -12 138 1 3 1250 369 273 48 107 chr5 87235318 87235486 -65301773 + B4A SINE B4 64 221 -71 3 1250 977 40 0 8 chr5 87235365 87235492 -65301767 + B1_Mus1 SINE Alu 23 148 0 3 1250 404 208 41 124 chr5 87235591 87235712 -65301547 + MT2B LTR ERVL 148 258 -343 3 1250 600 239 9 0 chr5 87235615 87235724 -65301535 + B1_Mur4 SINE Alu 9 118 -32 3 1250 426 304 86 16 chr5 87236677 87236864 -65300395 + B3 SINE B2 3 202 -14 3 1250 1467 63 11 0 chr5 87237069 87237260 -65299999 - B2_Mm1t SINE B2 0 193 1 3 1250 1637 21 0 20 chr5 87238540 87238736 -65298523 - B2_Mm1t SINE B2 0 193 2 3 1250 804 168 27 40 chr5 87238921 87239070 -65298189 - B1_Mur4 SINE Alu -1 149 3 3 1250 241 306 155 36 chr5 87239248 87239499 -65297760 - RCHARR1 DNA MER1_type -1 973 693 3 1250 1003 213 67 39 chr5 87239526 87239639 -65297620 - RCHARR1 DNA MER1_type -372 602 498 3 1250 1626 97 99 48 chr5 87239639 87239902 -65297357 - Lx LINE L1 -3 6651 6372 3 1250 3027 57 34 3 chr5 87239902 87240286 -65296973 + MTA_Mm LTR MaLR 1 396 0 3 1250 1626 97 99 48 chr5 87240286 87240315 -65296944 - Lx LINE L1 -283 6371 6344 3 1250 1003 213 67 39 chr5 87240315 87240484 -65296775 - RCHARR1 DNA MER1_type -477 497 312 3 1250 314 263 126 0 chr5 87240562 87240657 -65296602 - RCHARR1 DNA MER1_type -811 163 57 3 1250 1008 112 49 18 chr5 87240822 87240986 -65296273 - B2_Mm2 SINE B2 0 195 27 3 1250 1260 7 0 7 chr5 87240996 87241144 -65296115 - B1_Mm SINE Alu 0 147 1 3 1250 567 263 112 11 chr5 87242173 87242361 -65294898 - B3 SINE B2 -8 208 2 4 1250 23 0 0 0 chr5 87242633 87242656 -65294603 + AT_rich Low_complexity Low_complexity 1 23 0 4 1250 666 246 40 106 chr5 87242875 87243102 -65294157 - B3 SINE B2 -4 212 1 4 1250 585 103 0 0 chr5 87243277 87243364 -65293895 + B2_Mm2 SINE B2 1 87 -108 4 1250 1180 61 0 0 chr5 87243771 87243918 -65293341 - B1_Mus2 SINE Alu 0 147 1 4 1250 321 261 67 22 chr5 87244910 87245000 -65292259 + B3A SINE B2 1 94 -104 4 1250 1233 93 28 0 chr5 87245085 87245267 -65291992 + B2_Mm2 SINE B2 5 191 -4 4 1250 396 242 0 0 chr5 87246069 87246222 -65291037 + GA-rich Low_complexity Low_complexity 1 153 0 4 1250 342 0 0 0 chr5 87247112 87247150 -65290109 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1250 1303 35 85 23 chr5 87248380 87248557 -65288702 - B2_Mm2 SINE B2 -6 189 2 4 1250 23 0 0 0 chr5 87250634 87250657 -65286602 + AT_rich Low_complexity Low_complexity 1 23 0 4 1250 186 133 0 0 chr5 87251069 87251099 -65286160 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1250 22 0 0 0 chr5 87252102 87252124 -65285135 + AT_rich Low_complexity Low_complexity 1 22 0 4 1250 881 165 108 0 chr5 87252285 87252461 -65284798 - B2_Mm2 SINE B2 0 195 1 4 1250 595 227 15 15 chr5 87253126 87253260 -65283999 - B1_Mur4 SINE Alu 0 150 17 4 1250 322 324 19 96 chr5 87253128 87253285 -65283974 - B4 SINE B4 -69 223 79 4 1250 615 223 138 6 chr5 87253294 87253461 -65283798 - B3A SINE B2 -7 191 3 4 1250 22 0 0 0 chr5 87253609 87253631 -65283628 + AT_rich Low_complexity Low_complexity 1 22 0 4 1250 257 326 10 40 chr5 87253726 87253825 -65283434 + RSINE1 SINE B4 9 104 -61 4 1250 22 35 0 0 chr5 87254103 87254132 -65283127 + AT_rich Low_complexity Low_complexity 1 29 0 4 1250 1146 68 0 20 chr5 87255899 87256049 -65281210 + B1_Mus2 SINE Alu 1 147 0 4 1250 325 260 60 0 chr5 87256261 87256361 -65280898 - U6 snRNA snRNA -1 106 1 4 1250 350 256 13 13 chr5 87261924 87262003 -65275256 - RSINE1 SINE B4 -85 80 2 4 1250 21 0 0 0 chr5 87262276 87262297 -65274962 + AT_rich Low_complexity Low_complexity 1 21 0 4 1250 1130 37 0 7 chr5 87263076 87263212 -65274047 + B1_Mm SINE Alu 5 139 -8 4 1250 186 71 0 0 chr5 87263212 87263240 -65274019 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 4 1250 21 71 0 0 chr5 87264266 87264308 -65272951 + AT_rich Low_complexity Low_complexity 1 42 0 4 1250 268 287 8 8 chr5 87264784 87264907 -65272352 + (CAGAGA)n Simple_repeat Simple_repeat 3 125 0 4 1250 251 274 67 27 chr5 87266873 87266948 -65270311 + PB1D7 SINE Alu 10 87 -33 4 1250 272 267 47 56 chr5 87266963 87267070 -65270189 - PB1D9 SINE Alu -1 119 14 4 1250 373 183 287 0 chr5 87268427 87268542 -65268717 - B1_Mus1 SINE Alu 0 148 1 4 1250 183 80 0 0 chr5 87268633 87268658 -65268601 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 1250 1075 271 61 17 chr5 87269309 87269606 -65267653 - ORR1D2 LTR MaLR -60 310 1 4 1250 287 286 100 8 chr5 87269804 87269924 -65267335 + ID_B1 SINE B4 80 210 -14 4 1250 21 36 0 0 chr5 87269926 87269954 -65267305 + AT_rich Low_complexity Low_complexity 1 28 0 4 1250 3185 64 80 70 chr5 87269954 87270455 -65266804 - L1_Mus2 LINE L1 -2 6564 6059 4 1250 952 64 28 7 chr5 87270458 87270616 -65266643 - B2_Mm2 SINE B2 -46 170 3 4 1250 23 0 0 0 chr5 87270623 87270646 -65266613 + AT_rich Low_complexity Low_complexity 1 23 0 4 1250 437 262 129 15 chr5 87270872 87271004 -65266255 - RSINE1 SINE B4 -17 148 2 4 1250 30780 97 25 17 chr5 87271089 87272752 -65264507 + L1Md_F2 LINE L1 409 2064 -3819 4 1250 4184 73 5 16 chr5 87272752 87273333 -65263926 + L1Md_F2 LINE L1 6008 6582 0 4 1250 30780 81 12 12 chr5 87273333 87276834 -65260425 + L1Md_F2 LINE L1 2065 5585 -298 4 1250 7239 82 3 10 chr5 87276835 87277826 -65259433 + L1Md_F2 LINE L1 5587 6570 -12 4 1250 23 0 0 0 chr5 87278375 87278398 -65258861 + AT_rich Low_complexity Low_complexity 1 23 0 4 1250 790 244 50 15 chr5 87278463 87278663 -65258596 - B3 SINE B2 -9 207 1 4 1250 602 238 13 75 chr5 87278823 87278982 -65258277 - B1_Mur1 SINE Alu 0 149 1 4 1250 27 0 0 0 chr5 87279034 87279061 -65258198 + AT_rich Low_complexity Low_complexity 1 27 0 4 1250 438 255 12 170 chr5 87279203 87279368 -65257891 - B3 SINE B2 0 216 78 4 1250 765 272 89 26 chr5 87279488 87279801 -65257458 + Lx9 LINE L1 7143 7475 -169 4 1250 2866 157 169 38 chr5 87280106 87280762 -65256497 - RMER12 LTR ERVK -107 1215 474 4 1250 1672 148 134 18 chr5 87280762 87281105 -65256154 + RLTR9A2 LTR ERVK 1 383 0 4 1250 28 48 0 0 chr5 87281412 87281454 -65255805 + AT_rich Low_complexity Low_complexity 1 42 0 4 1250 11853 137 87 77 chr5 87281497 87282457 -65254802 + ETnERV2-int LTR ERVK 1066 1995 -5411 4 1250 1166 63 0 0 chr5 87282457 87282600 -65254659 - B1_Mus1 SINE Alu -5 143 1 4 1250 11853 137 87 77 chr5 87282600 87283592 -65253667 + ETnERV2-int LTR ERVK 1996 3026 -4380 4 1250 1251 86 16 41 chr5 87283592 87283786 -65253473 + B2_Mm2 SINE B2 3 191 -4 4 1250 11853 137 87 77 chr5 87283786 87284661 -65252598 + ETnERV2-int LTR ERVK 3027 3921 -3485 4 1250 763 112 7 7 chr5 87284661 87284796 -65252463 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 1250 2077 134 47 26 chr5 87284814 87285122 -65252137 + RMER16-int LTR ERVK 2991 3311 -2095 4 1250 306 0 0 0 chr5 87285122 87285156 -65252103 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4 1250 2077 134 47 26 chr5 87285156 87285229 -65252030 + RMER16-int LTR ERVK 3312 3380 -2026 4 1250 1140 76 0 0 chr5 87285229 87285374 -65251885 + B1_Mus1 SINE Alu 1 145 -3 4 1250 203 128 43 0 chr5 87285375 87285422 -65251837 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 4 1250 328 136 0 17 chr5 87285424 87285484 -65251775 + RMER16-int LTR ERVK 3370 3428 -1978 4 1250 1605 275 73 33 chr5 87285490 87286062 -65251197 + RLTR1 LTR ERV1 30 624 0 4 1250 3012 164 99 33 chr5 87286063 87286768 -65250491 + RMER16-int LTR ERVK 3425 4176 -1230 4 1250 271 222 24 36 chr5 87286779 87286863 -65250396 + ETnERV2-int LTR ERVK 6119 6201 -1205 4 1250 469 219 107 33 chr5 87286877 87287125 -65250134 + ETnERV2-int LTR ERVK 6223 6425 -981 4 1250 281 208 28 0 chr5 87287336 87287408 -65249851 + ETnERV2-int LTR ERVK 7331 7404 -2 4 1250 2179 173 3 20 chr5 87287409 87287799 -65249460 + RLTR9A2 LTR ERVK 1 383 0 4 1250 2213 148 79 12 chr5 87287799 87288203 -65249056 - RMER12 LTR ERVK -843 479 49 4 1250 396 0 0 0 chr5 87288484 87288528 -65248731 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1250 571 154 5 0 chr5 87288584 87288683 -65248576 + ORR1C2 LTR MaLR 3 105 -273 4 1250 301 260 0 0 chr5 87288681 87288748 -65248511 + PB1D9 SINE Alu 20 86 -63 4 1250 21 36 0 0 chr5 87288912 87288940 -65248319 + AT_rich Low_complexity Low_complexity 1 28 0 4 1250 25 75 0 0 chr5 87289434 87289487 -65247772 + AT_rich Low_complexity Low_complexity 1 53 0 4 1250 240 357 38 23 chr5 87290230 87290362 -65246897 - ID_B1 SINE B4 -8 216 83 4 1250 267 190 138 0 chr5 87290399 87290457 -65246802 - PB1D9 SINE Alu -12 108 43 4 1250 2254 65 39 3 chr5 87291124 87291437 -65245822 + IAPLTR2b LTR ERVK 1 310 -17 4 1250 359 36 55 0 chr5 87291437 87291492 -65245767 + (ATGGTG)n Simple_repeat Simple_repeat 4 61 0 4 1250 235 221 11 11 chr5 87292767 87292854 -65244405 + CT-rich Low_complexity Low_complexity 2 88 0 4 156 7203 67 1 15 chr5 87293489 87294183 -65243076 - L1_Mus1 LINE L1 -6 6561 5878 4 1251 3384 33 8 0 chr5 87294183 87294576 -65242683 + MTA_Mm LTR MaLR 1 396 0 4 1251 29391 120 17 6 chr5 87294576 87300180 -65237079 - L1_Mus1 LINE L1 -690 5877 213 4 1251 454 317 73 11 chr5 87301707 87302025 -65235234 - L1M4 LINE L1 -891 5255 4912 4 1251 368 346 24 0 chr5 87302544 87302671 -65234588 - ID_B1 SINE B4 -4 220 91 4 1251 21 0 0 0 chr5 87302970 87302991 -65234268 + AT_rich Low_complexity Low_complexity 1 21 0 4 1251 5069 141 50 7 chr5 87303093 87304003 -65233256 - Lx3B LINE L1 -125 6848 5952 4 1251 4642 101 19 1 chr5 87304003 87304771 -65232488 + Lx3A LINE L1 5153 5941 -1040 4 1251 313 350 33 16 chr5 87304771 87304893 -65232366 - RSINE1 SINE B4 -39 126 3 4 1251 268 367 30 54 chr5 87305183 87305350 -65231909 + RSINE1 SINE B4 3 165 0 4 1251 1216 51 22 33 chr5 87305670 87305851 -65231408 + L1Md_F3 LINE L1 6405 6583 -1 4 1251 33160 80 1 16 chr5 87305851 87311442 -65225817 - L1Md_F LINE L1 -103 5780 273 4 1251 3513 127 0 30 chr5 87311441 87312018 -65225241 - L1VL2 LINE L1 -5513 822 263 4 1251 396 0 0 0 chr5 87312507 87312551 -65224708 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1251 3157 246 180 8 chr5 87312555 87313621 -65223638 - Lx7 LINE L1 -281 7415 6166 4 1251 5109 159 34 29 chr5 87313626 87314761 -65222498 - L1_Mur3 LINE L1 -2036 3841 2702 4 1251 445 197 41 34 chr5 87314759 87314906 -65222353 - L1_Mur3 LINE L1 -4357 1520 1373 4 1251 381 22 0 0 chr5 87316488 87316534 -65220725 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1251 483 18 0 0 chr5 87316534 87316589 -65220670 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1251 376 304 46 30 chr5 87316726 87317028 -65220231 - L1_Mur3 LINE L1 -6495 1233 927 4 1251 234 91 0 0 chr5 87318082 87318115 -65219144 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1251 33 25 0 0 chr5 87318281 87318321 -65218938 + AT_rich Low_complexity Low_complexity 1 40 0 4 1251 21 36 0 0 chr5 87318333 87318361 -65218898 + AT_rich Low_complexity Low_complexity 1 28 0 4 1251 383 347 47 98 chr5 87318484 87318781 -65218478 - B4A SINE B4 0 292 11 4 1251 622 249 97 31 chr5 87319099 87319294 -65217965 - B3 SINE B2 -8 208 1 4 1251 217 350 56 84 chr5 87319751 87319929 -65217330 - B4 SINE B4 -115 177 5 4 1251 326 342 79 4 chr5 87320951 87321192 -65216067 + L1MA5 LINE L1 5779 6037 -263 4 1251 2048 177 86 166 chr5 87322874 87323167 -65214092 + RMER6C LTR ERVK 9 328 -362 4 1251 360 180 11 22 chr5 87323167 87323258 -65214001 + Lx7 LINE L1 7602 7691 -5 4 1251 2048 177 86 166 chr5 87323258 87323701 -65213558 + RMER6C LTR ERVK 329 686 -4 4 1251 485 160 0 20 chr5 87324284 87324386 -65212873 + GA-rich Low_complexity Low_complexity 2 101 0 4 1251 13887 152 23 11 chr5 87324386 87325284 -65211975 + L1_Mur1 LINE L1 1408 2304 -3582 4 1251 2728 175 45 24 chr5 87325284 87325833 -65211426 + RLTR31_Mm LTR ERVK 1 561 0 4 1251 13887 152 23 11 chr5 87325833 87327682 -65209577 + L1_Mur1 LINE L1 2305 4189 -1697 4 1251 3663 192 97 53 chr5 87327675 87328657 -65208602 + Lx2B LINE L1 5976 7000 0 5 1251 207 114 0 0 chr5 87328733 87328768 -65208491 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1251 468 347 11 39 chr5 87328771 87328951 -65208308 - B3A SINE B2 -21 177 3 5 1251 4501 155 30 19 chr5 87328952 87329798 -65207461 + RLTR13A LTR ERVK 1 855 0 5 1251 307 310 84 15 chr5 87330535 87330666 -65206593 - ORR1C2 LTR MaLR -5 379 240 5 1251 266 266 8 0 chr5 87330977 87331105 -65206154 + (TA)n Simple_repeat Simple_repeat 2 130 0 5 1251 1259 271 64 14 chr5 87331238 87331582 -65205677 - ORR1D1 LTR MaLR -5 369 9 5 1251 229 310 43 0 chr5 87331600 87331716 -65205543 - L1M3 LINE L1 -456 5715 5595 5 1251 248 286 38 9 chr5 87331782 87331888 -65205371 - L1MA4 LINE L1 -83 6217 6109 5 1251 337 68 16 48 chr5 87332306 87332355 -65204904 + (TTTTC)n Simple_repeat Simple_repeat 5 52 0 5 1251 1148 98 0 6 chr5 87332355 87332529 -65204730 + (TTTCC)n Simple_repeat Simple_repeat 3 175 0 5 1251 337 68 16 48 chr5 87332529 87332541 -65204718 + (TTTTC)n Simple_repeat Simple_repeat 3 14 0 5 1251 480 146 0 0 chr5 87333562 87333651 -65203608 + (TATG)n Simple_repeat Simple_repeat 3 91 0 5 1251 261 338 30 15 chr5 87333938 87334070 -65203189 - ID_B1 SINE B4 -8 216 83 5 1251 30 27 0 0 chr5 87334470 87334507 -65202752 + AT_rich Low_complexity Low_complexity 1 37 0 5 1251 215 312 38 0 chr5 87334631 87334711 -65202548 + B4 SINE B4 1 83 -209 5 1251 211 194 0 0 chr5 87336184 87336220 -65201039 + CT-rich Low_complexity Low_complexity 1 36 0 5 1251 262 230 257 0 chr5 87336896 87337009 -65200250 + L2c LINE L2 3242 3383 -4 5 1251 273 363 22 15 chr5 87337259 87337396 -65199863 + L4 LINE RTE 755 892 -1137 5 1251 1081 344 66 38 chr5 87337546 87337919 -65199340 + Lx8 LINE L1 6667 7064 -409 5 1251 2464 175 65 4 chr5 87337919 87338412 -65198847 + RLTR11A2 LTR ERVK 1 523 -4 5 1251 1081 344 66 38 chr5 87338412 87338793 -65198466 + Lx8 LINE L1 7065 7442 -31 5 1251 353 284 279 0 chr5 87338812 87338970 -65198289 + B3 SINE B2 4 205 -11 5 1251 202 194 16 16 chr5 87338970 87339033 -65198226 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1251 661 216 57 7 chr5 87339098 87339238 -65198021 - B1_Mm SINE Alu 0 147 1 5 1251 27 49 0 0 chr5 87339242 87339283 -65197976 + AT_rich Low_complexity Low_complexity 1 41 0 5 1251 593 274 15 0 chr5 87339295 87339430 -65197829 + B1_Mur2 SINE Alu 1 137 -12 5 1251 494 259 147 47 chr5 87339511 87339661 -65197598 + B3 SINE B2 1 165 -51 5 1251 225 0 0 0 chr5 87339661 87339686 -65197573 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1251 29029 29 0 1 chr5 87341071 87345240 -65192019 - L1Md_T LINE L1 0 6582 2416 5 1251 973 9 0 0 chr5 87345240 87345347 -65191912 - U6 snRNA snRNA 0 107 1 5 1251 311 296 55 70 chr5 87345355 87345555 -65191704 - MTC LTR MaLR -218 203 7 5 1251 357 24 0 0 chr5 87347272 87347314 -65189945 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1251 376 289 25 58 chr5 87348091 87348194 -65189065 + PB1D9 SINE Alu 4 100 -20 5 1251 195 42 0 0 chr5 87348194 87348218 -65189041 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1251 376 289 25 58 chr5 87348218 87348235 -65189024 + PB1D9 SINE Alu 101 120 0 5 1251 2999 39 6 0 chr5 87348959 87349323 -65187936 - L1Md_F2 LINE L1 -4 6578 6213 5 1251 227 31 31 0 chr5 87349706 87349738 -65187521 + (CAAAAA)n Simple_repeat Simple_repeat 1 33 0 5 1251 715 254 28 28 chr5 87350260 87350471 -65186788 - B3 SINE B2 -5 211 1 5 1251 210 455 0 0 chr5 87350541 87350684 -65186575 - B1F SINE Alu 0 149 7 5 1251 1082 285 40 12 chr5 87351307 87351630 -65185629 + Lx7 LINE L1 6981 7312 -384 5 1251 333 0 0 0 chr5 87351632 87351669 -65185590 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 5 1251 201 296 0 43 chr5 87351776 87351868 -65185391 + GA-rich Low_complexity Low_complexity 5 92 0 5 1251 23 33 0 0 chr5 87351908 87351938 -65185321 + AT_rich Low_complexity Low_complexity 1 30 0 5 1251 309 326 51 55 chr5 87352019 87352275 -65184984 + L1MA5 LINE L1 5041 5295 -848 5 1251 325 310 74 27 chr5 87352560 87352858 -65184401 + L1MA5 LINE L1 5629 5940 -360 5 1251 14236 78 6 7 chr5 87355778 87357060 -65180199 - L1_Mus2 LINE L1 -558 6008 4733 5 1251 220 27 54 0 chr5 87357060 87357097 -65180162 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 5 1251 14236 82 5 9 chr5 87357097 87357927 -65179332 - L1_Mus2 LINE L1 -1151 4732 3904 5 1251 839 66 9 0 chr5 87357927 87358033 -65179226 - U6 snRNA snRNA 0 107 1 5 1251 4252 197 14 13 chr5 87358078 87358937 -65178322 - Lx LINE L1 -12 6642 5783 5 1251 3913 81 15 4 chr5 87358988 87359521 -65177738 - L1_Mus1 LINE L1 0 6567 6029 5 1251 3709 62 0 0 chr5 87359521 87360168 -65177091 + L1_Mus1 LINE L1 5379 6025 -542 5 1251 6272 173 6 18 chr5 87360174 87360221 -65177038 - L1_Mm LINE L1 -96 5787 5748 5 1251 2483 163 81 32 chr5 87360221 87360728 -65176531 + RMER16 LTR ERVK 2 533 0 5 1251 6272 173 6 18 chr5 87360728 87361875 -65175384 - L1_Mm LINE L1 -136 5747 4607 5 1251 4978 129 7 1 chr5 87361876 87362997 -65174262 - L1VL4 LINE L1 -2235 1324 195 5 1251 964 306 141 0 chr5 87363321 87363684 -65173575 - MTD LTR MaLR 0 419 6 5 1251 465 242 51 25 chr5 87363716 87363873 -65173386 + RMER15 LTR ERVL 337 497 -78 5 1251 223 167 0 0 chr5 87363894 87363930 -65173329 + CT-rich Low_complexity Low_complexity 4 39 0 5 1251 333 141 0 0 chr5 87363932 87364003 -65173256 + (CTTG)n Simple_repeat Simple_repeat 2 72 0 5 1251 261 341 61 39 chr5 87364153 87364219 -65173040 + RMER15-int LTR ERVL 479 552 -4447 5 1251 387 0 0 0 chr5 87364219 87364262 -65172997 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1251 261 341 61 39 chr5 87364262 87364375 -65172884 + RMER15-int LTR ERVL 553 662 -4337 5 1251 268 345 32 58 chr5 87364486 87364640 -65172619 - Lx9 LINE L1 -499 7145 6996 5 1251 1416 192 7 41 chr5 87364665 87364958 -65172301 + ORR1C1 LTR MaLR 1 283 -95 5 1251 344 292 19 49 chr5 87365077 87365239 -65172020 + RLTR6-int LTR ERV1 1222 1378 -6178 5 1251 1020 319 92 76 chr5 87365300 87366059 -65171200 + RLTR6-int LTR ERV1 1556 2326 -5452 5 1251 316 345 33 57 chr5 87366954 87367320 -65169939 + MuRRS4-int LTR ERV1 4663 5019 -44 5 1251 2150 113 136 0 chr5 87367323 87367712 -65169547 + RLTR47_MM LTR ERV1 1 442 -90 5 1251 189 107 0 0 chr5 87367829 87367857 -65169402 + (TTA)n Simple_repeat Simple_repeat 3 30 0 5 1251 24 0 0 0 chr5 87368091 87368115 -65169144 + AT_rich Low_complexity Low_complexity 1 24 0 5 1251 24 0 0 0 chr5 87368237 87368261 -65168998 + AT_rich Low_complexity Low_complexity 1 24 0 5 1251 270 214 67 56 chr5 87368290 87368379 -65168880 - L1_Rod LINE L1 -6550 622 533 5 1251 373 316 106 5 chr5 87368721 87368909 -65168350 - B3 SINE B2 -9 207 1 5 1251 5104 105 9 4 chr5 87369082 87369849 -65167410 - L1_Mus3 LINE L1 -7 6631 5861 5 1251 2704 159 15 2 chr5 87369849 87370315 -65166944 - L1_Mm LINE L1 -321 5562 5091 5 1251 2528 227 28 39 chr5 87370318 87371032 -65166227 - L1VL4 LINE L1 -5436 866 161 5 1251 363 365 43 28 chr5 87371129 87371270 -65165989 + RSINE1 SINE B4 5 147 -18 5 1251 2529 197 61 28 chr5 87371817 87372412 -65164847 - Lx3C LINE L1 0 7000 6378 5 1251 9305 196 151 133 chr5 87372413 87374427 -65162832 - L1_Mur2 LINE L1 -8 5869 3589 5 1251 661 149 19 0 chr5 87374427 87374534 -65162725 + ORR1C2 LTR MaLR 276 384 0 5 1251 1061 146 5 31 chr5 87374534 87374719 -65162540 + RMER15 LTR ERVL 285 464 -111 5 1251 9305 196 151 133 chr5 87374719 87375355 -65161904 - L1_Mur2 LINE L1 -8 3588 2867 5 1251 735 12 0 0 chr5 87375355 87375439 -65161820 + (TTTC)n Simple_repeat Simple_repeat 2 85 0 5 1251 9305 196 151 133 chr5 87375439 87376129 -65161130 - L1_Mur2 LINE L1 -3011 2866 2172 5 1251 3018 95 143 0 chr5 87376137 87376954 -65160305 - L1_Mus3 LINE L1 -300 6338 5404 5 1251 216 0 0 0 chr5 87376965 87376989 -65160270 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1251 7888 97 10 14 chr5 87376992 87378258 -65159001 - L1_Mus1 LINE L1 -1 6566 5312 5 1251 1076 80 0 0 chr5 87378258 87378395 -65158864 + B1_Mm SINE Alu 5 141 -6 5 1251 7888 143 24 34 chr5 87378395 87379253 -65158006 - L1_Mus1 LINE L1 -572 5311 4461 5 1251 2064 109 7 13 chr5 87379253 87379667 -65157592 - RLTR13D2 LTR ERVK -185 838 521 5 1251 5292 173 1 9 chr5 87379681 87380615 -65156644 - ETnERV3-int LTR ERVK -30 5778 4852 5 1251 204 40 0 0 chr5 87380644 87380669 -65156590 + (CAG)n Simple_repeat Simple_repeat 2 26 0 5 1251 424 0 18 18 chr5 87381351 87381408 -65155851 + (TG)n Simple_repeat Simple_repeat 2 58 0 5 1251 382 261 3 30 chr5 87382219 87382338 -65154921 + PB1D9 SINE Alu 4 120 0 5 1251 4822 130 26 7 chr5 87382350 87383107 -65154152 + Lx2 LINE L1 6225 6996 -1 5 1251 1130 59 0 0 chr5 87383646 87383799 -65153460 + L1Md_A LINE L1 6430 6582 0 5 1251 772 289 133 68 chr5 87383875 87384477 -65152782 + Lx9 LINE L1 6863 7503 -141 5 1251 25 0 0 0 chr5 87385434 87385459 -65151800 + AT_rich Low_complexity Low_complexity 1 25 0 5 1251 3606 50 2 7 chr5 87385926 87386386 -65150873 - L1Md_F2 LINE L1 0 6582 6125 5 1251 2696 178 25 2 chr5 87386386 87386875 -65150384 - L1_Mur2 LINE L1 -6008 704 205 5 1251 5650 29 0 36 chr5 87387056 87388040 -65149219 + L1Md_A LINE L1 615 1554 -4329 5 1251 185 155 17 0 chr5 87388213 87388271 -65148988 + T-rich Low_complexity Low_complexity 2 60 0 5 1251 481 244 133 10 chr5 87388308 87388503 -65148756 - Lx9 LINE L1 -49 7595 7377 5 1251 611 245 145 21 chr5 87388503 87388745 -65148514 - RLTR10A LTR ERVK 0 411 140 5 1251 1447 258 9 3 chr5 87388796 87389146 -65148113 - Lx9 LINE L1 -262 7382 7031 5 1251 5170 77 28 48 chr5 87391652 87392239 -65145020 + RLTR22_Mus LTR ERVK 30 618 -1190 5 1251 2481 75 6 11 chr5 87392239 87392588 -65144671 + L1_Mus3 LINE L1 6291 6637 -1 5 1251 5170 77 28 48 chr5 87392588 87392814 -65144445 + RLTR22_Mus LTR ERVK 619 827 -981 5 1251 283 328 17 26 chr5 87393086 87393202 -65144057 + RMER12 LTR ERVK 1090 1204 -118 5 1251 756 160 0 0 chr5 87393204 87393329 -65143930 - L1_Mur2 LINE L1 -1117 4760 4636 5 1251 786 109 0 35 chr5 87393329 87393472 -65143787 + Lx LINE L1 6502 6639 -15 5 1251 228 352 0 0 chr5 87393625 87393696 -65143563 + Lx8 LINE L1 7222 7292 -181 5 1251 552 208 76 19 chr5 87393738 87393934 -65143325 - L1_Mur3 LINE L1 -787 5513 5282 5 1251 21 71 0 0 chr5 87393981 87394023 -65143236 + AT_rich Low_complexity Low_complexity 1 42 0 6 1251 5118 61 18 0 chr5 87394024 87394677 -65142582 - L1_Mus1 LINE L1 -4 6563 5899 6 1251 2133 170 12 32 chr5 87394682 87395084 -65142175 - ORR1B1 LTR MaLR 0 394 1 6 1251 293 229 104 0 chr5 87395084 87395180 -65142079 - Lx7 LINE L1 -32 7664 7559 6 1251 501 220 0 0 chr5 87395292 87395383 -65141876 - Lx7 LINE L1 -375 7321 7231 6 1251 290 214 57 0 chr5 87395593 87395663 -65141596 - Lx6 LINE L1 -683 6777 6704 6 1251 326 411 64 0 chr5 87396583 87396724 -65140535 - RSINE1 SINE B4 -12 153 4 6 1251 29 47 0 0 chr5 87396734 87396777 -65140482 + AT_rich Low_complexity Low_complexity 1 43 0 6 1251 8723 4 0 0 chr5 87396780 87397755 -65139504 + L1Md_A LINE L1 4612 5586 -297 6 1251 9034 2 0 0 chr5 87397755 87398751 -65138508 + L1Md_A LINE L1 5587 6582 0 6 1251 1434 166 3 20 chr5 87398805 87399106 -65138153 - L1_Mur3 LINE L1 -2550 3330 3035 6 1251 372 129 23 34 chr5 87399117 87399205 -65138054 + L1_Mus1 LINE L1 6481 6567 0 6 1251 25 0 0 0 chr5 87399209 87399234 -65138025 + AT_rich Low_complexity Low_complexity 1 25 0 6 1251 324 253 23 0 chr5 87399312 87399399 -65137860 + B3 SINE B2 128 216 0 6 1251 230 232 0 68 chr5 87399751 87399825 -65137434 + L1_Rod LINE L1 557 625 -6547 6 1251 245 351 14 51 chr5 87399830 87399968 -65137291 - Lx9 LINE L1 -952 6692 6560 6 1251 21 36 0 0 chr5 87400077 87400105 -65137154 + AT_rich Low_complexity Low_complexity 1 28 0 6 1251 387 67 0 0 chr5 87400137 87400197 -65137062 - L1Md_F2 LINE L1 -1 6581 6522 6 1251 28 61 0 0 chr5 87400199 87400248 -65137011 + AT_rich Low_complexity Low_complexity 1 49 0 6 1251 1217 90 6 0 chr5 87401367 87401544 -65135715 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 6 1251 2350 109 36 3 chr5 87401546 87401931 -65135328 - L1_Mus3 LINE L1 0 6638 6257 6 1251 2034 184 40 12 chr5 87402974 87403376 -65133883 - MTC LTR MaLR -8 413 1 6 1251 515 264 27 14 chr5 87403391 87403537 -65133722 + Lx9 LINE L1 6812 6959 -685 6 1251 1551 222 35 24 chr5 87403542 87403916 -65133343 - ORR1C1 LTR MaLR 0 378 1 6 1251 366 291 37 68 chr5 87403927 87404089 -65133170 + Lx9 LINE L1 6996 7152 -492 6 1251 360 43 0 0 chr5 87404338 87404384 -65132875 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1251 365 279 58 14 chr5 87404630 87404768 -65132491 - RMER15 LTR ERVL -76 499 356 6 1251 1132 267 116 16 chr5 87404813 87405194 -65132065 + MTD LTR MaLR 1 419 0 6 1251 2301 91 29 3 chr5 87406859 87407201 -65130058 - BGLII LTR ERVK 0 421 71 6 1251 324 243 48 14 chr5 87407370 87407516 -65129743 - Lx9 LINE L1 -1 7643 7493 6 1251 6934 128 35 1 chr5 87407919 87409756 -65127503 + L1_Mus4 LINE L1 4741 6634 -2 6 1251 22 70 0 0 chr5 87410887 87410930 -65126329 + AT_rich Low_complexity Low_complexity 1 43 0 6 1251 315 122 0 0 chr5 87410988 87411037 -65126222 + (TC)n Simple_repeat Simple_repeat 2 50 0 6 1251 668 272 52 19 chr5 87411206 87411416 -65125843 - Lx7 LINE L1 -423 7273 7057 6 1251 24 0 0 0 chr5 87411668 87411692 -65125567 + AT_rich Low_complexity Low_complexity 1 24 0 6 1251 1020 123 7 0 chr5 87412541 87412687 -65124572 + B1_Mus2 SINE Alu 1 147 0 6 1251 212 0 36 0 chr5 87412687 87412715 -65124544 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 6 1251 449 299 183 58 chr5 87412878 87413376 -65123883 - Lx9 LINE L1 -149 7495 6936 6 1251 23 0 0 0 chr5 87413720 87413743 -65123516 + AT_rich Low_complexity Low_complexity 1 23 0 6 1251 4587 119 37 6 chr5 87414016 87414741 -65122518 - Lx2 LINE L1 0 6997 6250 6 1251 3527 87 4 4 chr5 87414741 87415228 -65122031 + RLTR1C LTR ERV1 1 487 -16 6 1251 430 298 24 21 chr5 87415274 87415412 -65121847 - PB1D9 SINE Alu 0 149 4 6 1251 5743 137 34 29 chr5 87416740 87417757 -65119502 + RLTR13D2 LTR ERVK 1 1023 0 6 1251 244 365 29 0 chr5 87418662 87418766 -65118493 + L2c LINE L2 3276 3382 -5 6 1251 432 171 0 0 chr5 87419329 87419411 -65117848 + T-rich Low_complexity Low_complexity 1 82 0 6 1251 2754 121 9 23 chr5 87419449 87419882 -65117377 - L1_Mus4 LINE L1 -28 6608 6182 6 1251 453 36 0 0 chr5 87419889 87419944 -65117315 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1251 1266 280 81 59 chr5 87421250 87421892 -65115367 - RLTR40 LTR ERVK -83 734 79 6 1251 238 256 100 0 chr5 87421897 87421987 -65115272 - Lx7 LINE L1 -2 7694 7596 6 1251 3997 252 67 19 chr5 87422031 87423162 -65114097 - Lx7 LINE L1 -230 7466 6281 6 1251 241 215 31 0 chr5 87423162 87423227 -65114032 - RLTR40 LTR ERVK -732 85 19 6 1251 30 0 0 0 chr5 87424119 87424149 -65113110 + AT_rich Low_complexity Low_complexity 1 30 0 6 1251 32 26 0 0 chr5 87424607 87424646 -65112613 + AT_rich Low_complexity Low_complexity 1 39 0 6 1252 4639 89 42 1 chr5 87425111 87425778 -65111481 - L1_Mus2 LINE L1 -2 6564 5871 6 1252 2312 59 0 0 chr5 87425778 87426067 -65111192 + L1_Mus2 LINE L1 5589 5877 -690 6 1252 270 242 16 0 chr5 87427611 87427673 -65109586 - RMER6B LTR ERVK 0 461 399 6 1252 1273 168 30 4 chr5 87427679 87427912 -65109347 - RMER6B LTR ERVK -219 242 4 6 1252 195 69 0 0 chr5 87428304 87428333 -65108926 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1252 207 0 0 0 chr5 87428333 87428355 -65108904 + (TA)n Simple_repeat Simple_repeat 1 23 0 6 1252 280 351 53 0 chr5 87428401 87428495 -65108764 + MTEa LTR MaLR 3 101 -278 6 1252 1571 213 28 9 chr5 87428913 87429235 -65108024 + ORR1B1 LTR MaLR 41 368 -26 6 1252 207 69 0 0 chr5 87429235 87429264 -65107995 + (CAA)n Simple_repeat Simple_repeat 3 31 0 6 1252 1634 34 5 0 chr5 87431991 87432198 -65105061 - L1Md_F2 LINE L1 -1 6581 6374 6 1252 396 365 44 64 chr5 87432653 87432902 -65104357 + B4A SINE B4 29 272 -20 6 1252 204 231 0 0 chr5 87432968 87433020 -65104239 + (CATA)n Simple_repeat Simple_repeat 4 55 0 6 1252 869 174 145 0 chr5 87433476 87433648 -65103611 + B3 SINE B2 1 197 -19 6 1252 181 119 0 45 chr5 87434495 87434539 -65102720 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 6 1252 4798 64 2 0 chr5 87434990 87435601 -65101658 + L1Md_F2 LINE L1 5971 6582 0 6 1252 529 174 140 18 chr5 87436130 87436294 -65100965 - Lx9 LINE L1 -27 7617 7434 6 1252 43 71 0 0 chr5 87436526 87436611 -65100648 + AT_rich Low_complexity Low_complexity 1 85 0 6 1252 706 231 103 46 chr5 87436774 87436810 -65100449 - B3 SINE B2 -9 207 177 6 1252 603 0 0 0 chr5 87436810 87436877 -65100382 + (TTTA)n Simple_repeat Simple_repeat 3 69 0 6 1252 1096 115 1 0 chr5 87436877 87437035 -65100224 - B2_Mm2 SINE B2 -40 176 2 6 1252 243 0 0 0 chr5 87437051 87437078 -65100181 + (TA)n Simple_repeat Simple_repeat 2 28 0 6 1252 333 174 0 0 chr5 87437415 87437484 -65099775 + (TTTA)n Simple_repeat Simple_repeat 3 71 0 6 1252 1198 288 89 43 chr5 87438009 87438854 -65098405 - Lx9 LINE L1 -247 7397 6035 6 1252 404 325 48 12 chr5 87439179 87439344 -65097915 + B3A SINE B2 12 182 -16 6 1252 24 53 0 0 chr5 87439763 87439801 -65097458 + AT_rich Low_complexity Low_complexity 1 38 0 6 1252 624 14 0 0 chr5 87440672 87440745 -65096514 + (TA)n Simple_repeat Simple_repeat 2 74 0 6 1252 329 188 46 23 chr5 87441249 87441336 -65095923 - B3 SINE B2 0 216 128 6 1252 371 397 64 0 chr5 87441465 87441606 -65095653 + RSINE1 SINE B4 4 153 -12 6 1252 246 243 57 0 chr5 87442531 87442601 -65094658 + Lx6 LINE L1 6704 6777 -683 6 1252 560 242 187 0 chr5 87442822 87443117 -65094142 + Lx7 LINE L1 7241 7664 -32 6 1252 305 195 21 26 chr5 87443117 87443204 -65094055 + ORR1B1 LTR MaLR 1 89 -285 6 1252 310 206 16 0 chr5 87444273 87444336 -65092923 + Lx9 LINE L1 7031 7094 -550 6 1252 465 302 24 24 chr5 87444337 87444503 -65092756 - RNLTR23 LTR ERVK 0 642 477 6 1252 1710 258 52 6 chr5 87444725 87445231 -65092028 + Lx9 LINE L1 6925 7598 -46 6 1252 261 75 0 0 chr5 87445264 87445304 -65091955 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 6 1252 790 292 101 8 chr5 87445578 87445975 -65091284 + L1M2 LINE L1 3889 4322 -1818 6 1252 1112 305 92 45 chr5 87446208 87447220 -65090039 + L1M2 LINE L1 4296 5354 -789 6 1252 536 327 9 9 chr5 87447233 87447446 -65089813 - Lx9 LINE L1 -207 7437 7225 6 1252 183 140 0 57 chr5 87447546 87447599 -65089660 + GA-rich Low_complexity Low_complexity 1 50 0 6 1252 4568 115 125 17 chr5 87449207 87449982 -65087277 - Lx LINE L1 -1 6653 5795 6 1252 14078 103 8 2 chr5 87449985 87453371 -65083888 + L1Md_F2 LINE L1 452 5586 -297 6 1252 7167 68 26 8 chr5 87453371 87454349 -65082910 + L1Md_F2 LINE L1 5587 6581 -1 6 1252 308 220 71 139 chr5 87454388 87454626 -65082633 + Lx9 LINE L1 7419 7640 -4 6 1252 243 189 0 0 chr5 87454793 87454846 -65082413 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1252 528 282 96 27 chr5 87454846 87455138 -65082121 + L1MA8 LINE L1 5783 6094 -197 6 1252 2602 36 0 0 chr5 87455345 87455654 -65081605 + L1_Mus1 LINE L1 6257 6565 -2 6 1252 24 0 0 0 chr5 87455654 87455678 -65081581 + AT_rich Low_complexity Low_complexity 1 24 0 6 1252 1606 186 62 21 chr5 87456753 87457093 -65080166 - MTB_Mm LTR MaLR -8 399 46 6 1252 1641 21 5 0 chr5 87457187 87457378 -65079881 - B2_Mm1t SINE B2 0 193 2 6 1252 2359 265 45 32 chr5 87457873 87458628 -65078631 + L1_Mur3 LINE L1 85 849 -6879 6 1252 1471 208 10 0 chr5 87458627 87458915 -65078344 + L1_Mur3 LINE L1 4810 5100 -780 6 1252 541 123 27 55 chr5 87458916 87459038 -65078221 + Lx4B LINE L1 6917 7038 -20 6 1252 366 162 14 0 chr5 87459038 87459112 -65078147 + Lx9 LINE L1 7570 7644 0 6 1252 541 123 27 55 chr5 87459112 87459135 -65078124 + Lx4B LINE L1 7039 7058 0 6 1252 2177 202 28 6 chr5 87459133 87459606 -65077653 + L1_Mur3 LINE L1 5100 5582 -298 6 1252 2814 198 50 14 chr5 87460720 87461451 -65075808 - Lx5 LINE L1 -831 6219 5463 6 1252 3208 63 7 7 chr5 87461422 87461868 -65075391 + L1Md_F2 LINE L1 641 1086 -5638 6 1252 32149 36 2 3 chr5 87461860 87465834 -65071425 - L1Md_A LINE L1 -253 5630 1659 6 1252 2845 12 0 0 chr5 87465834 87466156 -65071103 + RLTRETN_Mm LTR ERVK 1 322 0 6 1252 40945 27 4 6 chr5 87466156 87471012 -65066247 + MMETn-int LTR ERVK 1 4844 0 6 1252 2831 16 0 0 chr5 87471012 87471334 -65065925 + RLTRETN_Mm LTR ERVK 1 322 0 6 1252 5257 49 1 33 chr5 87471334 87472411 -65064848 - L1Md_A LINE L1 -4219 1664 631 6 1252 635 52 0 0 chr5 87472415 87472492 -65064767 + L1Md_T LINE L1 5509 5585 -298 6 1252 8074 46 3 0 chr5 87472493 87473486 -65063773 + L1Md_T LINE L1 5587 6582 0 6 1252 424 57 0 0 chr5 87473486 87473539 -65063720 + L1Md_F2 LINE L1 1079 1131 -5593 6 1252 25290 42 2 1 chr5 87473537 87476672 -65060587 + L1Md_F2 LINE L1 2450 5586 -297 6 1252 7641 57 12 3 chr5 87476672 87477659 -65059600 + L1Md_F2 LINE L1 5587 6582 0 6 1252 562 177 0 0 chr5 87477662 87477758 -65059501 - L1_Mur2 LINE L1 -381 5496 5401 6 1252 3463 218 75 7 chr5 87477736 87478499 -65058760 + Lx5 LINE L1 6236 7050 0 7 1252 262 269 63 82 chr5 87478569 87478727 -65058532 + MER97c DNA MER1_type? 257 411 -679 7 1252 571 287 44 22 chr5 87479058 87479286 -65057973 + L1_Rod LINE L1 5351 5583 -264 7 1252 2914 176 31 7 chr5 87479406 87479422 -65057837 - RLTR31_Mur LTR ERVK 0 553 538 7 1252 402 21 0 0 chr5 87479422 87479469 -65057790 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 7 1252 2914 176 31 7 chr5 87479469 87479991 -65057268 - RLTR31_Mur LTR ERVK -16 537 3 7 1252 2957 210 17 48 chr5 87480012 87480766 -65056493 - RMER3D-int LTR ERVK -24 2818 2088 7 1252 872 161 0 0 chr5 87480770 87480919 -65056340 - Lx2 LINE L1 -738 6259 6111 7 1252 376 194 0 0 chr5 87480922 87480994 -65056265 - RMER3D-int LTR ERVK -1464 1378 1307 7 1252 240 193 53 0 chr5 87481078 87481135 -65056124 + Lx8 LINE L1 7413 7472 -1 7 1252 491 252 0 6 chr5 87481506 87481666 -65055593 + CT-rich Low_complexity Low_complexity 4 162 0 7 1252 255 152 0 0 chr5 87484407 87484453 -65052806 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 7 1252 594 248 74 46 chr5 87485033 87485249 -65052010 + RLTR45 LTR ERVK 261 482 0 7 1252 23 33 0 0 chr5 87485266 87485296 -65051963 + AT_rich Low_complexity Low_complexity 1 30 0 7 1252 23 0 0 0 chr5 87485544 87485567 -65051692 + AT_rich Low_complexity Low_complexity 1 23 0 7 1252 1160 259 47 0 chr5 87485567 87485911 -65051348 - Lx9 LINE L1 -8 7636 7277 7 1252 476 272 0 14 chr5 87485909 87486047 -65051212 + Lx9 LINE L1 6851 6986 -658 7 1252 342 0 0 0 chr5 87486214 87486252 -65051007 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1252 917 254 62 3 chr5 87486349 87486685 -65050574 - L1_Rod LINE L1 -6300 872 517 7 1252 851 57 8 0 chr5 87487100 87487222 -65050037 + L1Md_F3 LINE L1 6448 6570 -14 7 1252 1205 350 94 38 chr5 87487226 87487511 -65049748 - MTE-int LTR MaLR -516 1064 755 7 1252 872 104 8 0 chr5 87487511 87487645 -65049614 + (TTTTC)n Simple_repeat Simple_repeat 3 137 0 7 1252 845 98 97 15 chr5 87487654 87487788 -65049471 - B1_Mus2 SINE Alu -1 146 2 7 1252 1205 350 94 38 chr5 87487788 87488127 -65049132 - MTE-int LTR MaLR -826 754 394 7 1252 295 379 9 0 chr5 87488251 87488367 -65048892 - MER95 LTR ERV -300 131 15 7 1252 633 97 0 0 chr5 87488464 87488567 -65048692 + (TC)n Simple_repeat Simple_repeat 1 103 0 7 1252 275 386 26 0 chr5 87490000 87490114 -65047145 + MER95 LTR ERV 15 131 -300 7 1252 640 263 69 11 chr5 87490920 87491108 -65046151 + B3 SINE B2 11 209 -7 7 1252 558 303 67 6 chr5 87491287 87491466 -65045793 + MTE-int LTR MaLR 1389 1578 -2 7 1252 233 250 103 0 chr5 87493171 87493239 -65044020 - Lx9 LINE L1 -363 7281 7207 7 1252 292 295 107 0 chr5 87493368 87493480 -65043779 - Lx9 LINE L1 -439 7205 7082 7 1252 232 243 0 80 chr5 87493503 87493615 -65043644 - L1M2 LINE L1 -2639 3504 3402 7 1252 1704 63 5 0 chr5 87493617 87493838 -65043421 + L1_Mus1 LINE L1 6345 6566 -1 7 1252 235 267 53 13 chr5 87493958 87494034 -65043225 - Lx4B LINE L1 -165 6893 6815 7 1252 701 299 147 29 chr5 87494038 87494317 -65042942 + ORR1E LTR MaLR 59 370 0 7 1252 501 32 0 0 chr5 87494763 87494826 -65042433 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1252 4194 207 12 13 chr5 87496568 87497897 -65039362 + L1VL4 LINE L1 796 2138 -1774 7 1252 7157 157 74 16 chr5 87497913 87500000 -65037259 + L1Md_F LINE L1 217 2333 -3550 7 1252 21297 123 22 23 chr5 87500000 87504237 -65033022 + L1_Mus2 LINE L1 2334 6566 0 1 1252 13928 181 138 18 chr5 87504239 87505619 -65031640 + Lx2B LINE L1 2151 3581 -2305 2 1252 234 0 0 0 chr5 87505619 87505645 -65031614 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1252 13928 196 92 14 chr5 87505645 87508719 -65028540 + Lx2B LINE L1 3582 7000 0 2 1252 270 81 0 0 chr5 87509835 87509872 -65027387 + (CAAT)n Simple_repeat Simple_repeat 2 38 0 4 1252 474 208 136 0 chr5 87510664 87510818 -65026441 + Lx9 LINE L1 7436 7610 -34 5 1252 28 29 0 0 chr5 87511112 87511147 -65026112 + AT_rich Low_complexity Low_complexity 1 35 0 6 1252 329 23 0 0 chr5 87511182 87511226 -65026033 + L1Md_F3 LINE L1 6520 6563 -21 7 1252 189 0 0 0 chr5 87511231 87511252 -65026007 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 8 1252 1067 92 0 0 chr5 87511311 87511452 -65025807 - B1_Mus1 SINE Alu -7 141 1 9 1252 257 273 0 0 chr5 87514554 87514620 -65022639 + RLTR18-int LTR ERVK 4191 4256 -1105 1 1252 241 26 53 0 chr5 87516023 87516061 -65021198 + (CAA)n Simple_repeat Simple_repeat 3 42 0 1 1252 267 322 69 44 chr5 87516658 87516817 -65020442 - B4 SINE B4 -126 166 4 1 1252 296 297 63 63 chr5 87517126 87517252 -65020007 + MT2B LTR ERVL 139 264 -337 1 1252 710 89 0 10 chr5 87517186 87517288 -65019971 + B1_Mus2 SINE Alu 47 147 0 1 1252 1148 75 7 0 chr5 87517355 87517501 -65019758 + B1_Mus2 SINE Alu 1 147 0 1 1252 243 0 0 0 chr5 87517503 87517530 -65019729 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1252 195 42 0 0 chr5 87519068 87519092 -65018167 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1252 306 293 0 0 chr5 87519287 87519362 -65017897 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1252 487 359 79 8 chr5 87519409 87519662 -65017597 - B4A SINE B4 -20 272 2 1 1252 2413 184 64 45 chr5 87521701 87522307 -65014952 + L1_Mur1 LINE L1 519 1118 -5866 2 1252 227 0 91 0 chr5 87522307 87522340 -65014919 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2 1252 2413 186 74 52 chr5 87522340 87522393 -65014866 + L1_Mur1 LINE L1 1119 1171 -5813 2 1252 6384 145 58 15 chr5 87522391 87523634 -65013625 + L1_Mur1 LINE L1 3618 4913 -973 2 1252 1706 114 15 0 chr5 87523634 87523898 -65013361 + L1_Mus3 LINE L1 6371 6638 0 2 1252 22 0 0 0 chr5 87524087 87524109 -65013150 + AT_rich Low_complexity Low_complexity 1 22 0 2 1252 5681 129 36 2 chr5 87524307 87525828 -65011431 + L1VL4 LINE L1 186 1762 -1797 2 1252 216 97 0 0 chr5 87526852 87526883 -65010376 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1252 6118 13 0 0 chr5 87526903 87527592 -65009667 - L1Md_T LINE L1 0 6582 5894 2 1252 14483 21 1 0 chr5 87527592 87529294 -65007965 - L1_Mm LINE L1 -450 5433 3730 2 1252 19414 179 7 24 chr5 87530013 87532352 -65004907 + L1_Mus4 LINE L1 2107 4375 -1508 2 1252 561 30 0 0 chr5 87532352 87532419 -65004840 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1252 19414 165 5 15 chr5 87532419 87534538 -65002721 + L1_Mus4 LINE L1 4376 6499 -137 2 1252 367 217 0 0 chr5 87534521 87534590 -65002669 + Lx LINE L1 6411 6479 -175 3 1252 578 188 22 8 chr5 87534589 87534723 -65002536 + L1_Mur1 LINE L1 5256 5391 -495 2 1252 14764 201 18 117 chr5 87534719 87538154 -64999105 - L1_Mur2 LINE L1 -241 5636 2397 3 1252 2143 122 33 28 chr5 87538154 87538517 -64998742 + Lx LINE L1 6285 6649 -5 3 1252 14764 201 18 117 chr5 87538517 87538913 -64998346 - L1_Mur2 LINE L1 -3481 2396 2051 3 1252 2403 85 5 46 chr5 87538913 87539284 -64997975 - L1_Mus2 LINE L1 -2 6564 6209 3 1252 14764 201 18 117 chr5 87539284 87539883 -64997376 - L1_Mur2 LINE L1 -3827 2050 1642 3 1252 781 221 0 0 chr5 87540452 87540601 -64996658 + Lx3C LINE L1 6294 6442 -534 3 1252 1774 176 43 17 chr5 87540602 87540948 -64996311 - RMER17D2 LTR ERVK -1 808 454 3 1252 366 85 0 0 chr5 87540948 87541007 -64996252 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 3 1252 6143 83 26 6 chr5 87541019 87541902 -64995357 - RLTR13A3 LTR ERVK 0 978 78 3 1252 1432 166 27 27 chr5 87541880 87542001 -64995258 - RMER17D2 LTR ERVK -461 445 326 3 1252 3188 48 5 2 chr5 87542001 87542396 -64994863 - MTA_Mm LTR MaLR 0 396 1 3 1252 1432 166 27 27 chr5 87542396 87542609 -64994650 - RMER17D2 LTR ERVK -581 325 112 3 1252 560 252 47 8 chr5 87542642 87542770 -64994489 + ETnERV2-int LTR ERVK 7070 7202 -204 3 1252 237 145 0 52 chr5 87543639 87543697 -64993562 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 4 1252 482 212 122 26 chr5 87543740 87543929 -64993330 + Lx9 LINE L1 7436 7642 -2 4 1252 22 56 0 0 chr5 87543929 87543965 -64993294 + AT_rich Low_complexity Low_complexity 1 36 0 4 1252 501 17 0 0 chr5 87543987 87544045 -64993214 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 1252 21 57 0 0 chr5 87544273 87544308 -64992951 + AT_rich Low_complexity Low_complexity 1 35 0 4 1252 3221 241 39 19 chr5 87547609 87548434 -64988825 - Lx5 LINE L1 -323 6727 5887 4 1252 16293 191 37 29 chr5 87548430 87549569 -64987690 - L1_Mur2 LINE L1 -344 5533 4367 4 1252 4014 199 34 44 chr5 87549569 87549797 -64987462 + RMER19B LTR ERVK 1 230 -672 4 1252 297 0 0 0 chr5 87549797 87549830 -64987429 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1252 4014 199 34 44 chr5 87549830 87550512 -64986747 + RMER19B LTR ERVK 231 902 0 4 1252 16293 191 37 29 chr5 87550512 87552004 -64985255 - L1_Mur2 LINE L1 -1511 4366 2883 4 1252 1039 129 6 6 chr5 87552004 87552183 -64985076 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4 1252 16293 191 37 29 chr5 87552183 87553327 -64983932 - L1_Mur2 LINE L1 -2995 2882 1727 4 1252 21 57 0 0 chr5 87554021 87554056 -64983203 + AT_rich Low_complexity Low_complexity 1 35 0 5 1252 189 229 0 0 chr5 87555005 87555053 -64982206 + GA-rich Low_complexity Low_complexity 1 48 0 5 1252 586 264 20 13 chr5 87555110 87555260 -64981999 + Lx9 LINE L1 6313 6463 -1181 5 1252 320 94 19 0 chr5 87555485 87555538 -64981721 + (TGAA)n Simple_repeat Simple_repeat 3 56 0 5 1252 3678 85 68 2 chr5 87555571 87556088 -64981171 - L1_Mus1 LINE L1 -1 6566 6016 5 156 3080 93 22 0 chr5 87556088 87556677 -64980582 + L1_Mus1 LINE L1 5413 6012 -555 5 1253 461 187 124 18 chr5 87557475 87557644 -64979615 + Lx9 LINE L1 7436 7622 -22 5 1253 21 0 0 0 chr5 87557951 87557972 -64979287 + AT_rich Low_complexity Low_complexity 1 21 0 5 1253 26 30 0 0 chr5 87557991 87558024 -64979235 + AT_rich Low_complexity Low_complexity 1 33 0 5 1253 2447 137 8 0 chr5 87559877 87560250 -64977009 - Lx2 LINE L1 -237 6760 6385 5 1253 255 276 0 13 chr5 87560482 87560559 -64976700 - MMERVK10C-int LTR ERVK -4123 3458 3383 5 1253 415 149 351 0 chr5 87561601 87561755 -64975504 + Lx2A1 LINE L1 6786 6993 -15 6 1253 288 0 0 0 chr5 87561757 87561789 -64975470 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 6 1253 402 141 32 11 chr5 87561792 87561885 -64975374 + Lx2 LINE L1 6903 6997 0 6 1253 22 56 0 0 chr5 87563029 87563065 -64974194 + AT_rich Low_complexity Low_complexity 1 36 0 6 1253 410 266 96 25 chr5 87565848 87566045 -64971214 - B4A SINE B4 -64 228 10 6 1253 1044 96 14 0 chr5 87566464 87566610 -64970649 + B1_Mus1 SINE Alu 1 148 0 6 1253 23 0 0 0 chr5 87566739 87566762 -64970497 + AT_rich Low_complexity Low_complexity 1 23 0 6 1253 937 131 0 0 chr5 87566774 87566911 -64970348 - B1_Mus1 SINE Alu -9 139 3 6 1253 195 114 0 0 chr5 87567065 87567100 -64970159 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1253 2955 24 0 0 chr5 87567342 87567731 -64969528 - L1Md_F2 LINE L1 0 6582 6225 6 1253 1251 123 25 5 chr5 87569702 87569898 -64967361 + RMER16-int LTR ERVK 4085 4284 -1122 7 1253 715 256 0 27 chr5 87569892 87570077 -64967182 + RMER16-int LTR ERVK 5362 5541 -267 7 1253 1159 192 121 8 chr5 87570083 87570340 -64966919 + RMER16-int LTR ERVK 5494 5779 -29 7 1253 1516 134 17 4 chr5 87570348 87570581 -64966678 + RLTR13D2 LTR ERVK 1 236 -787 7 1253 521 210 0 0 chr5 87570601 87570701 -64966558 - Lx6 LINE L1 -374 7086 6987 7 1253 606 118 0 0 chr5 87570897 87570990 -64966269 + (GAAA)n Simple_repeat Simple_repeat 4 96 0 7 1253 230 293 68 8 chr5 87571226 87571343 -64965916 + L1MDa LINE L1 1897 2020 -4613 7 1253 628 294 27 32 chr5 87571509 87571695 -64965564 + Lx5 LINE L1 6813 7020 -38 7 1253 22 35 0 0 chr5 87571864 87571893 -64965366 + AT_rich Low_complexity Low_complexity 1 29 0 7 1253 2576 185 54 19 chr5 87571899 87572417 -64964842 - Lx4A LINE L1 -11 7047 6512 7 1253 1165 104 125 9 chr5 87572414 87572638 -64964621 - L1_Mur2 LINE L1 -1802 4075 3826 7 1253 10654 144 35 42 chr5 87572630 87572776 -64964483 - L1_Mur2 LINE L1 -2537 3340 3190 7 1253 1906 38 4 4 chr5 87572776 87573017 -64964242 - L1Md_F3 LINE L1 -1 6583 6343 7 1253 10654 144 35 42 chr5 87573017 87574173 -64963086 - L1_Mur2 LINE L1 -2688 3189 2059 7 1253 273 29 0 0 chr5 87574173 87574207 -64963052 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1253 10654 156 40 28 chr5 87574207 87575649 -64961610 - L1_Mur2 LINE L1 -3819 2058 583 7 1253 29 47 0 0 chr5 87575943 87575986 -64961273 + AT_rich Low_complexity Low_complexity 1 43 0 8 1253 216 0 0 0 chr5 87576558 87576582 -64960677 + (TA)n Simple_repeat Simple_repeat 2 25 0 8 1253 245 316 13 0 chr5 87577886 87577965 -64959294 - Lx9 LINE L1 -483 7161 7082 8 1253 560 331 16 32 chr5 87578027 87578277 -64958982 + Lx9 LINE L1 6773 7018 -626 8 1253 566 230 14 22 chr5 87578425 87578563 -64958696 - RMER13B LTR ERVK -2 906 770 8 1253 804 286 23 34 chr5 87578757 87579021 -64958238 + Lx9 LINE L1 7115 7375 -269 8 1253 1001 309 36 50 chr5 87579504 87579862 -64957397 + ORR1E LTR MaLR 1 353 -6 8 1253 2618 99 0 0 chr5 87580077 87580439 -64956820 - L1_Mus1 LINE L1 0 6567 6206 8 1253 1833 223 106 19 chr5 87580457 87580529 -64956730 - RLTR11A LTR ERVK 0 528 457 8 1253 369 0 0 0 chr5 87580529 87580570 -64956689 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1253 1833 223 106 19 chr5 87580570 87580977 -64956282 - RLTR11A LTR ERVK -72 456 7 8 1253 677 254 38 55 chr5 87581293 87581530 -64955729 - RMER16 LTR ERVK 0 533 301 8 1253 3049 27 3 8 chr5 87581587 87581956 -64955303 + IAPLTR1_Mm LTR ERVK 1 367 0 9 1253 3416 77 15 13 chr5 87581956 87582685 -64954574 + IAPEz-int LTR ERVK 8 662 -5819 9 1253 442 66 0 32 chr5 87582685 87582748 -64954511 + IAPEz-int LTR ERVK 1359 1419 -5062 9 1253 1763 123 4 15 chr5 87582737 87583002 -64954257 + IAPEz-int LTR ERVK 2236 2497 -5183 9 1253 914 81 24 0 chr5 87582999 87583122 -64954137 + IAPEz-int LTR ERVK 4785 4910 -2770 9 1253 26192 17 1 2 chr5 87583122 87586082 -64951177 + IAPEz-int LTR ERVK 3525 6481 0 9 1253 3049 27 3 8 chr5 87586082 87586451 -64950808 + IAPLTR1_Mm LTR ERVK 1 367 0 9 1253 357 165 79 33 chr5 87586465 87586587 -64950672 - RMER16 LTR ERVK -455 78 1 8 1253 3784 219 40 25 chr5 87586660 87587601 -64949658 - Lx3C LINE L1 0 6976 6022 9 1253 10551 201 169 9 chr5 87587576 87590718 -64946541 - L1_Mur2 LINE L1 -846 5031 1386 9 1253 1827 127 35 9 chr5 87590726 87591044 -64946215 - L1_Mus4 LINE L1 -6 6630 6305 9 1253 806 140 7 34 chr5 87591044 87591192 -64946067 - L1_Mur1 LINE L1 -1092 4794 4651 9 1253 206 245 0 0 chr5 87591216 87591269 -64945990 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 9 1253 45 45 0 0 chr5 87591796 87591862 -64945397 + AT_rich Low_complexity Low_complexity 1 66 0 9 1253 436 218 139 13 chr5 87592102 87592260 -64944999 + Lx9 LINE L1 7441 7618 -26 9 1253 212 57 54 54 chr5 87593068 87593124 -64944135 + T-rich Low_complexity Low_complexity 2 57 0 9 1253 30927 60 28 9 chr5 87593504 87598209 -64939050 + L1Md_F2 LINE L1 627 5409 -474 1 1253 6592 58 4 0 chr5 87598209 87599044 -64938215 + L1Md_F2 LINE L1 5740 6577 -5 1 1253 187 232 12 12 chr5 87599133 87599216 -64938043 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1253 447 367 57 24 chr5 87599264 87599510 -64937749 - B4A SINE B4 -20 272 19 1 1253 21 0 0 0 chr5 87600023 87600044 -64937215 + AT_rich Low_complexity Low_complexity 1 21 0 1 1253 14371 29 3 0 chr5 87600099 87602479 -64934780 - L1Md_T LINE L1 -1 6581 4192 1 1253 3791 147 102 46 chr5 87604753 87605583 -64931676 + RLTR13A3 LTR ERVK 1 978 0 1 1253 1771 185 38 6 chr5 87605797 87606140 -64931119 - ORR1B1 LTR MaLR 0 394 41 1 1253 459 0 0 0 chr5 87606694 87606745 -64930514 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1253 714 154 76 8 chr5 87606894 87607025 -64930234 + B1_Mus1 SINE Alu 7 146 -2 1 1253 381 296 41 65 chr5 87606897 87607067 -64930192 + B4A SINE B4 94 259 -33 1 1253 1188 165 31 9 chr5 87607237 87607463 -64929796 + RMER6B LTR ERVK 5 235 -226 1 1253 297 203 31 15 chr5 87607465 87607530 -64929729 + RMER6B LTR ERVK 396 461 0 1 1253 348 230 23 11 chr5 87607537 87607625 -64929634 - MTC LTR MaLR -14 407 319 1 1253 763 292 31 67 chr5 87607627 87607983 -64929276 - RLTR15 LTR ERVK -16 343 1 1 1253 226 211 70 0 chr5 87607994 87608051 -64929208 + Lx8 LINE L1 6807 6867 -606 1 1253 1664 235 67 18 chr5 87609957 87610403 -64926856 + Lx7 LINE L1 6944 7411 -285 1 1253 1288 245 115 70 chr5 87610576 87611178 -64926081 + RLTR40 LTR ERVK 82 710 -107 1 1253 516 32 0 0 chr5 87611210 87611272 -64925987 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1253 21 36 0 0 chr5 87611488 87611516 -64925743 + AT_rich Low_complexity Low_complexity 1 28 0 1 1253 274 305 0 54 chr5 87611920 87612031 -64925228 - Lx4B LINE L1 -9 7049 6945 1 1253 207 103 50 25 chr5 87612089 87612129 -64925130 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 1 1253 387 123 74 0 chr5 87612131 87612253 -64925006 + (TA)n Simple_repeat Simple_repeat 1 131 0 1 1253 26 0 0 0 chr5 87612908 87612934 -64924325 + AT_rich Low_complexity Low_complexity 1 26 0 1 1253 21 36 0 0 chr5 87613050 87613078 -64924181 + AT_rich Low_complexity Low_complexity 1 28 0 1 1253 2842 148 12 22 chr5 87613122 87613618 -64923641 - Lx2B LINE L1 -5 6995 6505 1 1253 2265 191 129 57 chr5 87613912 87614428 -64922831 - RLTR40 LTR ERVK -15 802 246 1 1253 1450 63 16 11 chr5 87614428 87614619 -64922640 + B2_Mm2 SINE B2 2 193 -2 1 1253 2265 191 129 57 chr5 87614619 87614751 -64922508 - RLTR40 LTR ERVK -572 245 107 1 1253 1891 191 82 2 chr5 87614787 87615201 -64922058 + L1VL4 LINE L1 194 640 -5662 1 1253 417 85 0 0 chr5 87615225 87615284 -64921975 - MusHAL1 LINE L1 -1591 1121 1063 1 1253 24541 124 11 27 chr5 87615283 87615521 -64921738 - L1VL1 LINE L1 -403 5480 5245 1 1253 342 0 0 0 chr5 87615521 87615559 -64921700 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1253 24541 118 12 28 chr5 87615559 87620643 -64916616 - L1VL1 LINE L1 -639 5244 244 1 1253 18683 170 9 15 chr5 87622697 87623575 -64913684 + L1_Mus4 LINE L1 2106 2993 -2890 1 1253 714 34 0 0 chr5 87623575 87623664 -64913595 + (CAGAA)n Simple_repeat Simple_repeat 4 92 0 1 1253 18683 163 9 12 chr5 87623664 87627180 -64910079 + L1_Mus4 LINE L1 2994 6477 -159 1 1253 459 145 0 0 chr5 87627187 87627256 -64910003 + L1_Mus4 LINE L1 6411 6479 -157 1 1253 649 178 20 7 chr5 87627243 87627390 -64909869 + L1_Mur1 LINE L1 5243 5391 -495 1 1253 13485 192 29 26 chr5 87627386 87629589 -64907670 - L1_Mur2 LINE L1 -241 5636 3475 1 1253 270 0 0 0 chr5 87629589 87629619 -64907640 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1253 13485 192 29 26 chr5 87629619 87630593 -64906666 - L1_Mur2 LINE L1 -2403 3474 2452 1 1253 4550 51 5 0 chr5 87630625 87631189 -64906070 - L1Md_F2 LINE L1 -2 6580 6014 1 1253 1598 130 26 24 chr5 87631258 87631572 -64905687 + Lx LINE L1 6288 6631 -5 1 1253 1102 229 65 41 chr5 87631568 87631955 -64905304 - L1_Mur2 LINE L1 -3468 2409 2014 1 1253 2661 98 11 3 chr5 87631968 87632348 -64904911 - L1_Mus2 LINE L1 -1 6565 6183 1 1253 1188 89 6 11 chr5 87632348 87632529 -64904730 + L1_Mus2 LINE L1 6004 6183 -383 1 1253 1606 224 12 19 chr5 87632517 87632931 -64904328 - L1_Mur2 LINE L1 -3825 2055 1645 1 1253 2410 195 42 15 chr5 87633498 87633647 -64903612 + Lx3C LINE L1 6294 6442 -534 1 1253 4212 167 23 27 chr5 87633647 87634459 -64902800 - RMER17D2 LTR ERVK 0 809 1 1 1253 2410 217 48 19 chr5 87634459 87634933 -64902326 + Lx3C LINE L1 6092 7038 -20 1 1253 28 0 0 0 chr5 87634933 87634961 -64902298 + AT_rich Low_complexity Low_complexity 1 28 0 1 1253 732 285 57 48 chr5 87635054 87635389 -64901870 + RLTR10D LTR ERVK 1 338 -21 1 1253 1056 258 13 38 chr5 87635436 87635750 -64901509 - Lx6 LINE L1 -8 7452 7147 1 1253 354 45 0 0 chr5 87636065 87636109 -64901150 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 1 1253 332 68 27 27 chr5 87636832 87636907 -64900352 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 1 1253 29613 92 16 1 chr5 87636996 87641929 -64895330 + L1Md_F2 LINE L1 575 5586 -297 1 1253 7455 77 0 4 chr5 87641929 87642917 -64894342 + L1Md_F2 LINE L1 5587 6570 -12 1 1253 328 242 15 30 chr5 87642926 87643058 -64894201 + Lx9 LINE L1 7489 7618 -26 1 1253 43 0 0 0 chr5 87643071 87643114 -64894145 + AT_rich Low_complexity Low_complexity 1 43 0 1 1253 453 81 0 0 chr5 87643154 87643216 -64894043 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1253 26 50 0 0 chr5 87643438 87643478 -64893781 + AT_rich Low_complexity Low_complexity 1 40 0 1 1253 258 32 0 0 chr5 87644150 87644181 -64893078 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1 1253 494 75 0 12 chr5 87646353 87646434 -64890825 + (TG)n Simple_repeat Simple_repeat 1 80 0 1 1253 410 336 84 50 chr5 87646486 87646724 -64890535 - B4A SINE B4 -23 269 24 1 1253 429 20 0 0 chr5 87646910 87646960 -64890299 + (AAATG)n Simple_repeat Simple_repeat 2 51 0 1 1253 4013 46 0 0 chr5 87647132 87647612 -64889647 + L1Md_A LINE L1 6102 6581 -1 1 1253 6478 172 14 19 chr5 87647727 87649161 -64888098 + L1_Mur1 LINE L1 2987 4413 -1473 1 1253 7023 192 34 9 chr5 87649155 87651468 -64885791 - Lx5 LINE L1 -310 6740 4363 1 1253 794 207 62 0 chr5 87651470 87651649 -64885610 + RMER19B LTR ERVK 1 190 -712 1 1253 9299 91 5 12 chr5 87651653 87653744 -64883515 + L1Md_F3 LINE L1 441 2512 -3371 1 1253 2689 66 0 0 chr5 87653744 87654076 -64883183 + IAPEY3_LTR LTR ERVK 1 332 0 1 1253 15066 82 36 6 chr5 87654076 87657027 -64880232 + IAPEY3-int LTR ERVK 1 3040 -4640 1 1253 29304 50 17 1 chr5 87657024 87661053 -64876206 + IAPEY3-int LTR ERVK 3587 7680 0 1 1253 2888 39 0 0 chr5 87661053 87661385 -64875874 + IAPEY3_LTR LTR ERVK 1 332 0 1 1253 20295 68 59 1 chr5 87661385 87664295 -64872964 + L1Md_F3 LINE L1 2507 5586 -297 1 1253 7995 45 10 0 chr5 87664295 87665283 -64871976 + L1Md_F3 LINE L1 5587 6584 0 1 1253 639 260 26 8 chr5 87665285 87665464 -64871795 + RMER19B LTR ERVK 161 409 -202 1 1253 378 0 0 0 chr5 87666022 87666064 -64871195 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1 1253 7202 79 3 10 chr5 87666079 87667728 -64869531 - L1Md_F2 LINE L1 -12 6570 4936 1 1253 10884 85 7 0 chr5 87667728 87669229 -64868030 + L1Md_F2 LINE L1 3447 4958 -925 1 1253 21 82 0 0 chr5 87669544 87669593 -64867666 + AT_rich Low_complexity Low_complexity 1 49 0 1 1253 1223 41 0 0 chr5 87670122 87670269 -64866990 + B1_Mus2 SINE Alu 1 147 0 1 1253 522 254 198 39 chr5 87670630 87671019 -64866240 + Lx9 LINE L1 6015 6465 -1179 1 1253 346 157 326 28 chr5 87672068 87672113 -64865146 + Lx9 LINE L1 7436 7487 -157 1 1253 243 0 0 0 chr5 87672113 87672140 -64865119 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1253 346 157 326 28 chr5 87672140 87672238 -64865021 + Lx9 LINE L1 7488 7622 -22 1 1253 21 0 0 0 chr5 87672547 87672568 -64864691 + AT_rich Low_complexity Low_complexity 1 21 0 1 1253 286 203 0 18 chr5 87673265 87673354 -64863905 + B1_Mm SINE Alu 33 145 -2 1 1253 687 84 0 0 chr5 87673354 87673449 -64863810 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1 1253 2035 77 0 4 chr5 87674214 87674487 -64862772 - L1Md_F2 LINE L1 -210 6372 6101 1 1253 1458 110 9 0 chr5 87674495 87674714 -64862545 + L1_Mus1 LINE L1 6347 6567 0 1 1253 2376 142 8 0 chr5 87675187 87675560 -64861699 - Lx2 LINE L1 -237 6760 6385 1 1253 422 298 31 0 chr5 87676149 87676340 -64860919 + L1_Mus4 LINE L1 6440 6636 0 1 1253 353 204 11 11 chr5 87676342 87676436 -64860823 + Lx2 LINE L1 6903 6996 -1 1 1253 22 0 0 0 chr5 87677599 87677621 -64859638 + AT_rich Low_complexity Low_complexity 1 22 0 1 1253 212 275 14 42 chr5 87678911 87678983 -64858276 + PB1D7 SINE Alu 37 106 -14 1 1253 504 0 0 0 chr5 87679792 87679848 -64857411 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 1 1253 420 283 165 17 chr5 87680401 87680577 -64856682 - B4A SINE B4 -72 220 19 1 1253 192 97 0 0 chr5 87681143 87681174 -64856085 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1253 995 130 14 0 chr5 87681182 87681328 -64855931 - B1_Mus1 SINE Alu 0 148 1 1 1253 1040 113 0 0 chr5 87681618 87681759 -64855500 + B1_Mm SINE Alu 1 141 -6 1 1253 870 83 0 0 chr5 87681761 87681881 -64855378 + (GAAA)n Simple_repeat Simple_repeat 3 122 0 1 1253 911 98 45 0 chr5 87682164 87682296 -64854963 - B1_Mus2 SINE Alu -9 138 1 1 1253 385 328 28 90 chr5 87682384 87682595 -64854664 - B3A SINE B2 0 198 1 1 1253 408 40 0 0 chr5 87682658 87682708 -64854551 + (TA)n Simple_repeat Simple_repeat 1 50 0 1 1253 1340 104 26 0 chr5 87684170 87684362 -64852897 + ETnERV3-int LTR ERVK 4088 4284 -1122 1 1253 1730 233 29 12 chr5 87684356 87684764 -64852495 + ETnERV3-int LTR ERVK 5362 5776 -32 1 1253 6529 123 22 20 chr5 87684776 87685796 -64851463 + RLTR13D2 LTR ERVK 1 1023 0 1 1253 298 271 43 0 chr5 87686180 87686250 -64851009 + Lx8 LINE L1 7158 7230 -243 1 1253 1601 229 43 95 chr5 87686299 87686570 -64850689 - RLTR11A2 LTR ERVK 0 527 257 1 1253 951 92 0 0 chr5 87686570 87686723 -64850536 + (TCTCC)n Simple_repeat Simple_repeat 3 155 0 1 1253 1601 229 43 95 chr5 87686723 87687007 -64850252 - RLTR11A2 LTR ERVK -271 256 1 1 1254 25 31 0 0 chr5 87687788 87687820 -64849439 + AT_rich Low_complexity Low_complexity 1 32 0 1 1254 841 199 16 27 chr5 87688187 87688373 -64848886 - Lx6 LINE L1 -7 7453 7270 1 1254 15326 133 11 128 chr5 87688373 87691954 -64845305 + L1_Mm LINE L1 2424 5586 -297 1 1254 8953 7 0 0 chr5 87691954 87692950 -64844309 + L1Md_T LINE L1 5587 6582 0 1 1254 9775 77 52 1 chr5 87692958 87694323 -64842936 + L1Md_F2 LINE L1 4151 5584 -299 1 1254 7328 70 24 1 chr5 87694325 87695297 -64841962 + L1Md_F2 LINE L1 5587 6580 -2 1 1254 9098 146 61 1 chr5 87695365 87696262 -64840997 - L1_Mur2 LINE L1 -2853 3024 2050 1 1254 423 0 0 0 chr5 87696262 87696309 -64840950 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1254 9098 146 61 1 chr5 87696309 87697110 -64840149 - L1_Mur2 LINE L1 -3828 2049 1225 1 1254 2936 15 9 0 chr5 87697110 87697444 -64839815 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1254 4717 59 44 14 chr5 87697444 87698080 -64839179 + IAPEz-int LTR ERVK 8 662 -5819 1 1254 442 66 0 32 chr5 87698080 87698143 -64839116 + IAPEz-int LTR ERVK 1359 1419 -5062 1 1254 1836 111 4 4 chr5 87698132 87698394 -64838865 + IAPEz-int LTR ERVK 2236 2497 -5183 1 1254 890 98 24 0 chr5 87698391 87698514 -64838745 + IAPEz-int LTR ERVK 4785 4910 -2770 1 1254 467 66 0 0 chr5 87698514 87698575 -64838684 + IAPEz-int LTR ERVK 3525 3585 -2896 1 1254 21264 12 1 0 chr5 87698567 87700929 -64836330 + IAPEz-int LTR ERVK 4117 6481 0 1 1254 2961 15 3 0 chr5 87700929 87701265 -64835994 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1254 3205 183 45 6 chr5 87701265 87701888 -64835371 - L1_Mur2 LINE L1 -5857 1229 583 1 1254 26 50 0 0 chr5 87702180 87702220 -64835039 + AT_rich Low_complexity Low_complexity 1 40 0 2 1254 414 0 0 0 chr5 87702795 87702841 -64834418 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1254 1994 141 9 12 chr5 87703023 87703361 -64833898 + L1_Mm LINE L1 4602 4938 -945 2 1254 7229 93 10 0 chr5 87703388 87704561 -64832698 - L1_Mus1 LINE L1 -1 6566 5381 2 1254 912 213 34 119 chr5 87704561 87704913 -64832346 - RLTRETN_Mm LTR ERVK 0 322 1 2 1254 595 193 49 14 chr5 87704913 87705055 -64832204 - MMETn-int LTR ERVK 0 4844 4698 2 1254 330 238 241 8 chr5 87705055 87705275 -64831984 - RLTR13B1 LTR ERVK -462 440 155 2 1254 6239 151 20 7 chr5 87705277 87706242 -64831017 - ETnERV2-int LTR ERVK -203 7203 6227 2 1254 5424 152 28 20 chr5 87706347 87707726 -64829533 - MMETn-int LTR ERVK -3321 4085 2348 2 1254 590 171 61 15 chr5 87707727 87707858 -64829401 - MMETn-int LTR ERVK -3828 3578 3442 2 1254 2683 122 42 50 chr5 87708341 87708997 -64828262 - MMETn-int LTR ERVK -2657 2187 1730 2 1254 6124 111 24 71 chr5 87709021 87710119 -64827140 - MMETn-int LTR ERVK -3714 1130 85 2 1254 7803 148 41 6 chr5 87710128 87712319 -64824940 - L1Md_F LINE L1 -3412 2471 201 2 1254 2497 92 34 22 chr5 87712321 87712730 -64824529 - MTA_Mm-int LTR MaLR -684 414 1 2 1254 2749 107 5 2 chr5 87712730 87713125 -64824134 - MTA_Mm LTR MaLR 0 396 1 2 1254 321 25 0 0 chr5 87714191 87714214 -64823045 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 1254 426 53 0 0 chr5 87714214 87714271 -64822988 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1254 321 25 0 0 chr5 87714271 87714287 -64822972 + (TA)n Simple_repeat Simple_repeat 2 17 0 2 1254 234 62 0 0 chr5 87714286 87714318 -64822941 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1254 515 224 43 8 chr5 87715274 87715391 -64821868 - RLTR25A LTR ERVK 0 1028 908 2 1254 3558 234 42 2 chr5 87715412 87716223 -64821036 - RLTR25A LTR ERVK -260 843 1 2 1254 1980 202 8 3 chr5 87716924 87717316 -64819943 - ORR1B1 LTR MaLR 0 394 1 2 1254 1926 38 21 0 chr5 87719580 87719819 -64817440 - L1Md_F2 LINE L1 -9 6573 6330 2 1254 300 87 0 42 chr5 87719871 87719919 -64817340 + B1_Mur2 SINE Alu 102 147 -2 2 1254 552 256 143 20 chr5 87720236 87720487 -64816772 + Lx8 LINE L1 7192 7473 0 2 1254 248 67 0 62 chr5 87720495 87720543 -64816716 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 2 1254 264 337 0 63 chr5 87721178 87721273 -64815986 + BC1_Mm scRNA scRNA 1 89 -63 2 1254 588 169 8 8 chr5 87721345 87721470 -64815789 - Lx LINE L1 -3 6651 6527 2 1254 187 65 0 115 chr5 87721504 87721556 -64815703 + A-rich Low_complexity Low_complexity 5 50 0 2 1254 344 146 48 12 chr5 87722165 87722331 -64814928 + (TA)n Simple_repeat Simple_repeat 2 173 0 2 1254 24 53 0 0 chr5 87722331 87722369 -64814890 + AT_rich Low_complexity Low_complexity 1 38 0 2 1254 890 164 45 11 chr5 87722369 87722548 -64814711 - Lx LINE L1 -18 6636 6452 2 1254 297 0 0 0 chr5 87722967 87723000 -64814259 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1254 305 26 0 0 chr5 87725249 87725288 -64811971 - U5 snRNA snRNA -71 45 7 2 1254 4497 32 0 0 chr5 87725288 87725818 -64811441 + L1Md_A LINE L1 6053 6582 0 2 1254 394 372 75 8 chr5 87726928 87727180 -64810079 + B4A SINE B4 22 290 -2 2 1254 1577 213 100 27 chr5 87727327 87727685 -64809574 + Lx9 LINE L1 7125 7505 -139 2 1254 441 0 0 0 chr5 87727685 87727734 -64809525 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1254 1577 213 100 27 chr5 87727734 87727853 -64809406 + Lx9 LINE L1 7506 7636 -8 2 1254 23 0 0 0 chr5 87729051 87729074 -64808185 + AT_rich Low_complexity Low_complexity 1 23 0 2 1254 10168 118 13 27 chr5 87729710 87730644 -64806615 + MusHAL1 LINE L1 752 1536 -4347 2 1254 535 73 12 0 chr5 87730644 87730726 -64806533 + L1Md_A LINE L1 6500 6582 0 2 1254 12895 101 27 4 chr5 87730726 87732001 -64805258 + MusHAL1 LINE L1 1525 2813 -3070 2 1254 231 36 0 0 chr5 87732001 87732029 -64805230 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1254 804 40 0 0 chr5 87732029 87732128 -64805131 + (GA)n Simple_repeat Simple_repeat 2 101 0 2 1254 12895 101 27 4 chr5 87732128 87732886 -64804373 + MusHAL1 LINE L1 2812 3601 -313 2 1254 447 328 23 0 chr5 87733356 87733484 -64803775 - RSINE1 SINE B4 -19 146 16 2 1254 419 115 0 0 chr5 87734366 87734427 -64802832 - RLTR46 LTR ERVK 0 320 260 2 1254 673 114 9 9 chr5 87734434 87734540 -64802719 - RLTR46 LTR ERVK -214 106 1 2 1254 23074 114 6 6 chr5 87734540 87738004 -64799255 - MMERVK10C-int LTR ERVK -354 7227 4125 2 1254 7976 92 21 1 chr5 87738003 87739088 -64798171 - MMERVK10C-int LTR ERVK -3662 3919 2813 2 1254 3607 78 92 10 chr5 87739108 87739628 -64797631 - MMERVK10C-int LTR ERVK -5134 2447 1885 2 1254 362 172 0 0 chr5 87739630 87739688 -64797571 - MMERVK10C-int LTR ERVK -5142 995 938 2 1254 1448 212 173 34 chr5 87739693 87740184 -64797075 - MMERVK10C-int LTR ERVK -4587 819 113 2 1254 458 157 10 10 chr5 87740119 87740222 -64797037 + MMERVK10C-int LTR ERVK 759 861 -6720 2 1254 269 250 41 57 chr5 87740249 87740372 -64796887 - MMERVK10C-int LTR ERVK -7557 123 3 2 1254 2032 120 13 3 chr5 87740375 87740692 -64796567 - RLTR46 LTR ERVK 0 320 1 2 1254 414 0 0 0 chr5 87741236 87741282 -64795977 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2 1254 1049 187 10 29 chr5 87741854 87742063 -64795196 - Lx4A LINE L1 -54 7004 6800 2 1254 6893 52 2 5 chr5 87742043 87742904 -64794355 + L1Md_F2 LINE L1 5650 6508 -74 2 1254 385 322 72 8 chr5 87742971 87743265 -64793994 - L1M4 LINE L1 -3266 2880 2570 2 1254 231 185 0 18 chr5 87743602 87743657 -64793602 - Lx9 LINE L1 -680 6964 6911 2 1254 265 254 16 0 chr5 87743786 87743849 -64793410 - Lx9 LINE L1 -501 7143 7080 2 1254 550 328 20 36 chr5 87743920 87744170 -64793089 + Lx9 LINE L1 6773 7018 -626 2 1254 598 247 13 46 chr5 87744311 87744464 -64792795 - RMER13B LTR ERVK 0 908 761 2 1254 765 61 0 0 chr5 87744563 87744662 -64792597 + (TA)n Simple_repeat Simple_repeat 2 100 0 2 1254 857 284 4 27 chr5 87744741 87745002 -64792257 + Lx9 LINE L1 7124 7378 -266 2 1254 932 310 57 34 chr5 87745485 87745836 -64791423 + ORR1E LTR MaLR 1 359 0 2 1254 1758 213 90 22 chr5 87746021 87746510 -64790749 - RLTR11A LTR ERVK 0 528 7 2 1254 1000 71 7 0 chr5 87746576 87746717 -64790542 - L1_Mus2 LINE L1 0 6566 6425 2 1254 881 195 18 9 chr5 87746718 87746935 -64790324 - L1_Mur2 LINE L1 -2140 3737 3519 2 1254 5816 197 25 7 chr5 87746937 87747023 -64790236 - MusHAL1 LINE L1 -826 1886 1801 2 1254 192 77 0 0 chr5 87747023 87747049 -64790210 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 1254 5816 197 25 7 chr5 87747049 87747997 -64789262 - MusHAL1 LINE L1 -912 1800 833 2 1254 420 20 0 0 chr5 87747997 87748046 -64789213 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1254 5816 197 25 7 chr5 87748046 87748306 -64788953 - MusHAL1 LINE L1 -1880 832 569 2 1254 1879 198 10 3 chr5 87748334 87748719 -64788540 + L1_Mm LINE L1 4542 4929 -954 2 1254 961 124 0 0 chr5 87748713 87748858 -64788401 - MusHAL1 LINE L1 -2039 673 529 2 1254 24910 117 15 3 chr5 87748867 87753506 -64783753 + L1_Mus1 LINE L1 1870 6566 -1 2 1254 266 275 64 0 chr5 87753899 87754008 -64783251 + Lx7 LINE L1 7580 7695 -1 2 1254 393 22 0 0 chr5 87755362 87755408 -64781851 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1254 22 56 0 0 chr5 87755450 87755486 -64781773 + AT_rich Low_complexity Low_complexity 1 36 0 2 1254 379 180 39 44 chr5 87756804 87756984 -64780275 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 2 1254 324 200 0 0 chr5 87757499 87757579 -64779680 + CT-rich Low_complexity Low_complexity 1 80 0 2 1254 41 36 0 0 chr5 87757826 87757881 -64779378 + AT_rich Low_complexity Low_complexity 1 55 0 2 1254 642 236 75 0 chr5 87758139 87758313 -64778946 + Lx6 LINE L1 7248 7434 -26 2 1254 425 269 0 0 chr5 87758744 87758837 -64778422 + B1_Mur1 SINE Alu 14 106 -43 2 1254 1048 253 62 137 chr5 87760479 87760596 -64776663 + MTD LTR MaLR 6 104 -315 2 1254 2007 25 0 0 chr5 87760596 87760831 -64776428 - L1Md_A LINE L1 -1 6581 6347 2 1254 1048 253 62 137 chr5 87760831 87761056 -64776203 + MTD LTR MaLR 105 315 -104 2 1254 318 26 0 0 chr5 87761056 87761095 -64776164 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1254 1048 253 62 137 chr5 87761095 87761173 -64776086 + MTD LTR MaLR 316 395 -24 2 1254 342 0 0 0 chr5 87761175 87761213 -64776046 + (AATAG)n Simple_repeat Simple_repeat 3 40 0 2 1254 336 288 11 11 chr5 87761243 87761354 -64775905 + Lx9 LINE L1 6362 6449 -1195 2 1254 646 312 62 0 chr5 87761356 87761612 -64775647 + Lx9 LINE L1 6698 6969 -675 2 1254 366 283 64 42 chr5 87761711 87761947 -64775312 + Lx9 LINE L1 7349 7589 -55 2 1254 27 0 0 0 chr5 87761999 87762026 -64775233 + AT_rich Low_complexity Low_complexity 1 27 0 2 1254 827 23 30 23 chr5 87762339 87762472 -64774787 + (TTCTC)n Simple_repeat Simple_repeat 2 135 0 2 1254 2669 102 45 0 chr5 87762957 87763339 -64773920 + MTB LTR MaLR 2 400 0 2 1254 563 251 224 37 chr5 87763761 87764270 -64772989 + L1_Rod LINE L1 4758 5361 -486 2 1254 8537 95 14 10 chr5 87766395 87768411 -64768848 - L1_Mus1 LINE L1 -1 6566 4546 2 1254 1061 279 9 3 chr5 87768837 87769215 -64768044 + Lx6 LINE L1 6455 6881 -579 2 1254 405 298 12 93 chr5 87769217 87769476 -64767783 + L1VL1 LINE L1 253 490 -5932 2 1254 473 226 52 15 chr5 87769492 87769627 -64767632 + L1Md_F LINE L1 567 706 -5813 2 1254 1202 211 32 0 chr5 87769635 87769914 -64767345 + L1Md_F LINE L1 628 915 -5604 2 1254 20158 127 14 7 chr5 87769913 87770948 -64766311 - L1Md_F LINE L1 -1348 4535 3478 2 1254 189 0 0 0 chr5 87770948 87770969 -64766290 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1254 20158 139 30 8 chr5 87770969 87774167 -64763092 - L1Md_F LINE L1 -2406 3477 222 2 1254 2519 109 14 7 chr5 87774167 87774610 -64762649 - MTA_Mm-int LTR MaLR -817 441 1 2 1254 2652 98 5 3 chr5 87774610 87774989 -64762270 - MTA_Mm LTR MaLR 0 396 17 2 1254 24 0 0 0 chr5 87775878 87775902 -64761357 + AT_rich Low_complexity Low_complexity 1 24 0 2 1254 475 277 30 8 chr5 87776823 87776954 -64760305 - RLTR25A LTR ERVK 0 1103 970 2 1254 3681 224 43 2 chr5 87776962 87777772 -64759487 - RLTR25A LTR ERVK -260 843 1 2 1254 2014 199 8 3 chr5 87778475 87778867 -64758392 - ORR1B1 LTR MaLR 0 394 1 2 1254 981 147 47 10 chr5 87781181 87781374 -64755885 - Lx LINE L1 -3 6651 6452 2 1254 387 0 0 0 chr5 87783642 87783685 -64753574 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2 1254 1221 75 0 0 chr5 87783685 87783844 -64753415 - B2_Mm1t SINE B2 -33 160 2 2 1254 464 369 67 8 chr5 87785361 87785615 -64751644 + B4A SINE B4 22 290 -2 2 1254 1690 219 69 26 chr5 87785762 87786254 -64751005 + Lx9 LINE L1 7125 7637 -7 2 1254 23 0 0 0 chr5 87787526 87787549 -64749710 + AT_rich Low_complexity Low_complexity 1 23 0 2 1254 10910 139 21 35 chr5 87788188 87791395 -64745864 + MusHAL1 LINE L1 752 3865 -49 2 1254 457 341 22 0 chr5 87791561 87791696 -64745563 + RSINE1 SINE B4 9 146 -19 2 1254 450 317 133 24 chr5 87792153 87792483 -64744776 - Lx8 LINE L1 -4 7469 7104 2 1254 378 0 0 0 chr5 87794307 87794349 -64742910 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 2 1254 24 67 0 0 chr5 87795043 87795088 -64742171 + AT_rich Low_complexity Low_complexity 1 45 0 2 1254 1428 170 28 4 chr5 87795267 87795521 -64741738 - Lx4A LINE L1 -2 7056 6797 2 1254 192 40 0 0 chr5 87796233 87796258 -64741001 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1254 243 23 68 0 chr5 87796741 87796785 -64740474 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2 1254 994 116 0 39 chr5 87796792 87796945 -64740314 - B1_Mus1 SINE Alu 0 148 2 2 1254 1027 130 0 0 chr5 87796971 87797117 -64740142 - B1_Mus2 SINE Alu 0 147 2 3 1254 36 0 0 0 chr5 87797124 87797160 -64740099 + AT_rich Low_complexity Low_complexity 1 36 0 3 1254 700 164 9 10 chr5 87797531 87797655 -64739604 + B1_Mus1 SINE Alu 2 127 -21 3 1254 408 299 166 22 chr5 87798052 87798281 -64738978 + MER2 DNA MER2_type 78 339 -6 3 1254 289 311 75 40 chr5 87799658 87800133 -64737126 + RMER16-int LTR ERVK 1513 1910 -3496 3 1254 617 250 65 25 chr5 87800299 87800500 -64736759 - B3 SINE B2 -6 210 2 3 1254 24 32 0 0 chr5 87802864 87802895 -64734364 + AT_rich Low_complexity Low_complexity 1 31 0 3 1254 227 79 26 0 chr5 87802957 87802995 -64734264 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1254 1083 95 0 7 chr5 87804652 87804790 -64732469 + B1_Mus1 SINE Alu 1 138 -10 3 1254 198 71 0 0 chr5 87804790 87804818 -64732441 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 3 1254 183 296 0 22 chr5 87805498 87805543 -64731716 - L4 LINE RTE -912 1117 1074 3 1254 375 194 0 0 chr5 87806025 87806118 -64731141 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 1254 596 358 42 4 chr5 87806165 87806426 -64730833 - B4A SINE B4 -20 272 2 3 1254 341 366 47 42 chr5 87807579 87807793 -64729466 - B3 SINE B2 0 216 2 3 1254 405 0 0 0 chr5 87807855 87807900 -64729359 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1254 2447 206 71 15 chr5 87809098 87809789 -64727470 + L1_Mur1 LINE L1 460 1171 -5813 3 1254 6271 140 72 20 chr5 87809787 87811015 -64726244 + L1_Mur1 LINE L1 3618 4908 -978 3 1254 1619 117 11 4 chr5 87811020 87811286 -64725973 + L1_Mus3 LINE L1 6371 6638 0 3 1254 28 29 0 0 chr5 87811455 87811490 -64725769 + AT_rich Low_complexity Low_complexity 1 35 0 3 1254 1614 200 95 0 chr5 87811696 87812021 -64725238 + L1VL4 LINE L1 193 548 -5754 3 1254 1111 82 0 0 chr5 87812046 87812193 -64725066 - B1_Mm SINE Alu 0 147 1 3 1254 1894 109 11 0 chr5 87812223 87812508 -64724751 + L1VL4 LINE L1 537 824 -5478 3 1254 2050 91 13 0 chr5 87812507 87812815 -64724444 + MusHAL1 LINE L1 604 915 -1797 3 156 36131 37 2 8 chr5 87813058 87818264 -64718995 + L1Md_T LINE L1 416 5585 -298 3 1255 8335 36 3 0 chr5 87818265 87819257 -64718002 + L1Md_T LINE L1 5587 6581 -1 3 1255 726 149 0 0 chr5 87820345 87820479 -64716780 + (TG)n Simple_repeat Simple_repeat 2 135 0 3 1255 242 343 14 0 chr5 87820480 87820550 -64716709 - BC1_Mm scRNA scRNA -81 71 1 3 1255 402 250 0 0 chr5 87820875 87820963 -64716296 + PB1D10 SINE Alu 1 88 -29 3 1255 19822 175 10 6 chr5 87823115 87823986 -64713273 + L1_Mus1 LINE L1 2106 2993 -2890 3 1255 221 28 0 77 chr5 87823986 87824025 -64713234 + (CAAAC)n Simple_repeat Simple_repeat 1 36 0 3 1255 447 19 0 0 chr5 87824025 87824077 -64713182 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 3 1255 19822 175 10 6 chr5 87824077 87824648 -64712611 + L1_Mus1 LINE L1 2994 3569 -2314 3 1255 1077 75 0 0 chr5 87824648 87824782 -64712477 + B1_Mus1 SINE Alu 2 135 -13 3 1255 186 71 0 0 chr5 87824782 87824810 -64712449 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 1255 19822 150 9 5 chr5 87824810 87827804 -64709455 + L1_Mus1 LINE L1 3570 6567 0 3 1255 337 349 48 90 chr5 87828854 87829021 -64708238 - B4A SINE B4 -123 169 10 3 1255 23 0 0 0 chr5 87829968 87829991 -64707268 + AT_rich Low_complexity Low_complexity 1 23 0 3 1255 363 23 0 0 chr5 87831258 87831302 -64705957 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1255 432 353 76 5 chr5 87831388 87831573 -64705686 - B4A SINE B4 -71 221 24 3 1255 576 0 0 0 chr5 87831760 87831824 -64705435 + (AAATG)n Simple_repeat Simple_repeat 3 66 0 3 1255 7167 176 14 17 chr5 87832107 87833546 -64703713 + L1_Mur1 LINE L1 2980 4413 -1473 3 1255 5096 209 39 13 chr5 87833551 87833733 -64703526 - Lx5 LINE L1 -321 6729 6537 3 1255 1378 57 5 20 chr5 87833733 87833929 -64703330 - L1Md_F3 LINE L1 -14 6570 6378 3 1255 13751 196 115 36 chr5 87833929 87835634 -64701625 - Lx5 LINE L1 -514 6536 4280 3 1255 180 0 0 0 chr5 87835634 87835654 -64701605 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 3 1255 13751 189 161 50 chr5 87835654 87838315 -64698944 - Lx5 LINE L1 -1598 4279 1732 3 1255 26 50 0 0 chr5 87839020 87839060 -64698199 + AT_rich Low_complexity Low_complexity 1 40 0 3 1255 1007 21 28 28 chr5 87839866 87840011 -64697248 + L1Md_F3 LINE L1 6439 6583 -1 3 1255 244 220 0 20 chr5 87840188 87840239 -64697020 + GA-rich Low_complexity Low_complexity 1 50 0 3 1255 269 140 18 0 chr5 87840661 87840718 -64696541 + (TGAA)n Simple_repeat Simple_repeat 3 60 0 3 1255 516 176 131 18 chr5 87841515 87841573 -64695686 + Lx9 LINE L1 7436 7515 -129 3 1255 282 116 0 0 chr5 87841573 87841616 -64695643 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1255 516 176 131 18 chr5 87841616 87841725 -64695534 + Lx9 LINE L1 7516 7621 -23 3 1255 3041 67 18 5 chr5 87841989 87842379 -64694880 - MTA_Mm LTR MaLR 0 396 2 3 1255 7365 82 16 1 chr5 87844050 87845237 -64692022 + L1_Mus1 LINE L1 5368 6567 0 3 1255 2587 131 5 0 chr5 87845653 87846026 -64691233 - Lx2 LINE L1 -238 6759 6385 3 1255 373 248 78 8 chr5 87846335 87846502 -64690757 + Lx2A1 LINE L1 6786 6949 -59 3 1255 397 273 49 0 chr5 87846507 87846650 -64690609 + (TGGG)n Simple_repeat Simple_repeat 2 151 0 3 1255 539 170 59 59 chr5 87846650 87846819 -64690440 + Lx2A1 LINE L1 6831 6999 -9 3 1255 393 152 19 39 chr5 87846825 87846928 -64690331 + Lx2 LINE L1 6897 6997 0 3 1255 347 313 158 11 chr5 87850212 87850396 -64686863 - B4A SINE B4 -64 228 18 3 1255 873 137 50 7 chr5 87850955 87850966 -64686293 - B1_Mus1 SINE Alu -1 147 137 3 1255 1064 126 6 0 chr5 87850966 87851140 -64686119 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 3 1255 873 137 50 7 chr5 87851140 87851268 -64685991 - B1_Mus1 SINE Alu -12 136 2 3 1255 198 0 0 0 chr5 87851404 87851426 -64685833 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1255 421 340 19 63 chr5 87851908 87852115 -64685144 - B3A SINE B2 0 198 1 3 1255 22 0 0 0 chr5 87852171 87852193 -64685066 + AT_rich Low_complexity Low_complexity 1 22 0 3 1255 989 96 0 0 chr5 87853577 87853712 -64683547 + RMER16-int LTR ERVK 4088 4222 -1184 3 1255 5610 66 16 13 chr5 87853712 87854464 -64682795 + L1Md_F2 LINE L1 5819 6572 -10 3 1255 477 218 111 15 chr5 87854470 87854605 -64682654 + ETnERV3-int LTR ERVK 5633 5780 -28 3 1255 6911 103 26 12 chr5 87854612 87855621 -64681638 + RLTR13D2 LTR ERVK 1 1023 0 3 1255 262 350 115 51 chr5 87855909 87856118 -64681141 + Lx8 LINE L1 7052 7289 -184 3 1255 1665 214 40 129 chr5 87856118 87856383 -64680876 - RLTR11A2 LTR ERVK 0 527 256 3 1255 761 0 11 0 chr5 87856383 87856472 -64680787 + (TCTCC)n Simple_repeat Simple_repeat 1 90 0 3 1255 1665 214 40 129 chr5 87856472 87856785 -64680474 - RLTR11A2 LTR ERVK -272 255 1 3 1255 262 350 115 51 chr5 87856785 87856906 -64680353 + Lx8 LINE L1 7290 7403 -70 3 1255 2028 252 14 21 chr5 87857969 87858451 -64678808 - Lx6 LINE L1 -5 7455 6977 3 1255 39332 27 2 0 chr5 87858440 87863873 -64673386 - L1Md_T LINE L1 0 6582 1141 3 1255 393 312 114 38 chr5 87864244 87864534 -64672725 + L1MEf LINE L1 1279 1590 -4610 3 1255 932 265 17 9 chr5 87864690 87864922 -64672337 + Lx5 LINE L1 6814 7047 -3 3 1255 2481 176 73 21 chr5 87865092 87865610 -64671649 - Lx4A LINE L1 -1 7057 6513 3 1255 1184 115 62 41 chr5 87865610 87865854 -64671405 - L1_Mur2 LINE L1 -1803 4074 3826 3 1255 9944 143 29 78 chr5 87865846 87868756 -64668503 - L1_Mur2 LINE L1 -2537 3340 579 3 1255 222 37 0 0 chr5 87869673 87869700 -64667559 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1255 33371 87 1 0 chr5 87870155 87871199 -64666060 + L1Md_F3 LINE L1 927 1977 -3906 3 1255 243 0 0 0 chr5 87871199 87871226 -64666033 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3 1255 33371 62 2 0 chr5 87871226 87874833 -64662426 + L1Md_F3 LINE L1 1978 5586 -297 3 1255 7900 52 0 2 chr5 87874833 87875816 -64661443 + L1Md_F3 LINE L1 5587 6567 -17 3 1255 1937 276 109 17 chr5 87876166 87876914 -64660345 + Lx5 LINE L1 6358 7433 -27 3 1255 271 361 54 27 chr5 87877189 87877337 -64659922 + B3A SINE B2 1 152 -46 3 1255 207 0 0 0 chr5 87877361 87877384 -64659875 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 3 1255 432 0 0 0 chr5 87877395 87877443 -64659816 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1255 22 0 0 0 chr5 87877911 87877933 -64659326 + AT_rich Low_complexity Low_complexity 1 22 0 3 1255 545 156 171 8 chr5 87877945 87878068 -64659191 + ORR1D1 LTR MaLR 3 145 -229 3 1255 3071 55 182 5 chr5 87878084 87878519 -64658740 - RLTR1B LTR ERV1 0 512 1 3 1255 31 58 0 0 chr5 87878660 87878712 -64658547 + AT_rich Low_complexity Low_complexity 1 52 0 3 1255 1131 187 15 0 chr5 87878827 87879030 -64658229 + URR1B DNA MER1_type 15 220 -5 3 1255 555 340 47 36 chr5 87879484 87879759 -64657500 + MTEa LTR MaLR 91 368 -11 3 1255 5108 102 26 21 chr5 87879851 87880653 -64656606 - RLTR13D1 LTR ERVK 0 806 1 3 1255 934 136 18 18 chr5 87880829 87880994 -64656265 + RMER1B Other Other 705 869 -197 3 1255 1846 194 60 2 chr5 87880994 87881392 -64655867 - MTC LTR MaLR 0 421 1 3 1255 2692 108 12 2 chr5 87881651 87881885 -64655374 + RLTR9D LTR ERVK 1 235 -168 3 1255 270 0 0 0 chr5 87881885 87881915 -64655344 + (G)n Simple_repeat Simple_repeat 1 30 0 3 1255 2692 108 12 2 chr5 87881915 87882079 -64655180 + RLTR9D LTR ERVK 236 401 -2 3 1255 342 253 0 11 chr5 87882578 87882670 -64654589 + L1ME2z LINE L1 6335 6425 -19 3 1255 245 279 0 16 chr5 87883018 87883142 -64654117 + CT-rich Low_complexity Low_complexity 2 123 0 3 1255 23 0 0 0 chr5 87883317 87883340 -64653919 + AT_rich Low_complexity Low_complexity 1 23 0 3 1255 515 246 30 8 chr5 87885311 87885442 -64651817 - RLTR25A LTR ERVK 0 1103 970 3 1255 3821 216 46 5 chr5 87885450 87886260 -64650999 - RLTR25A LTR ERVK -260 843 1 3 1255 2001 202 8 3 chr5 87886955 87887347 -64649912 - ORR1B1 LTR MaLR 0 394 1 3 1255 24 0 0 0 chr5 87887950 87887974 -64649285 + AT_rich Low_complexity Low_complexity 1 24 0 3 1255 21 57 0 0 chr5 87888277 87888312 -64648947 + AT_rich Low_complexity Low_complexity 1 35 0 3 1255 236 159 0 43 chr5 87889844 87889890 -64647369 + PB1D9 SINE Alu 74 117 -3 3 1255 551 259 122 25 chr5 87890206 87890444 -64646815 + Lx8 LINE L1 7192 7452 -21 3 1255 417 188 0 0 chr5 87890444 87890529 -64646730 + (TA)n Simple_repeat Simple_repeat 1 85 0 3 1255 203 75 0 70 chr5 87890552 87890595 -64646664 + (TAAAA)n Simple_repeat Simple_repeat 5 44 0 3 1255 303 300 0 36 chr5 87891484 87891567 -64645692 + ID4_ SINE ID 1 80 -3 3 1255 892 132 9 154 chr5 87891644 87891877 -64645382 - Lx LINE L1 -3 6651 6453 4 1255 24 0 0 0 chr5 87892460 87892484 -64644775 + AT_rich Low_complexity Low_complexity 1 24 0 4 1255 24 67 0 0 chr5 87892573 87892618 -64644641 + AT_rich Low_complexity Low_complexity 1 45 0 4 1255 372 184 41 58 chr5 87894126 87894247 -64643012 - Lx6 LINE L1 0 7460 7342 4 1255 3676 64 19 0 chr5 87895675 87896144 -64641115 + L1_Mm LINE L1 5110 5587 -296 4 1255 7919 42 18 0 chr5 87896144 87897121 -64640138 + L1Md_F2 LINE L1 5588 6582 0 4 1255 3676 216 24 45 chr5 87897121 87897190 -64640069 + L1_Mm LINE L1 5588 5672 -687 4 1255 1355 213 53 35 chr5 87897464 87897805 -64639454 + Lx9 LINE L1 7125 7471 -173 4 1255 10324 97 21 10 chr5 87897813 87899377 -64637882 + MusHAL1 LINE L1 1073 2654 -58 4 1255 375 333 21 0 chr5 87899545 87899686 -64637573 + RSINE1 SINE B4 3 146 -19 4 1255 499 333 101 24 chr5 87900170 87900545 -64636714 - Lx8 LINE L1 -30 7443 7040 4 1255 264 170 19 19 chr5 87900857 87900911 -64636348 - B4 SINE B4 -218 74 21 4 1255 1156 55 0 14 chr5 87901150 87901297 -64635962 + B1_Mm SINE Alu 2 146 -1 4 1255 224 72 0 45 chr5 87901297 87901341 -64635918 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 4 1255 557 308 54 5 chr5 87901603 87901743 -64635516 + B3A SINE B2 4 147 -51 4 1255 468 35 0 0 chr5 87901743 87901801 -64635458 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1255 557 308 54 5 chr5 87901801 87901846 -64635413 + B3A SINE B2 148 197 -1 4 1255 191 306 167 32 chr5 87902213 87902399 -64634860 + L2a LINE L2 3055 3265 -161 4 1255 315 228 21 11 chr5 87902401 87902494 -64634765 + (TA)n Simple_repeat Simple_repeat 2 95 0 4 1255 184 330 102 41 chr5 87902509 87902607 -64634652 + L2a LINE L2 3307 3410 -16 4 1255 2351 68 63 30 chr5 87904370 87904705 -64632554 - ORR1A1 LTR MaLR 0 346 1 4 1255 12815 69 27 6 chr5 87904705 87906460 -64630799 - ORR1A1-int LTR MaLR 0 1792 1 4 1255 2391 62 63 24 chr5 87906460 87906793 -64630466 - ORR1A1 LTR MaLR 0 346 1 4 1255 1285 124 123 39 chr5 87907865 87908125 -64629134 - Lx LINE L1 -6 6648 6367 4 1255 48 53 0 0 chr5 87908651 87908727 -64628532 + AT_rich Low_complexity Low_complexity 1 76 0 4 1255 25 31 0 0 chr5 87908809 87908841 -64628418 + AT_rich Low_complexity Low_complexity 1 32 0 4 1255 24 0 0 0 chr5 87909010 87909034 -64628225 + AT_rich Low_complexity Low_complexity 1 24 0 4 1255 1449 249 61 80 chr5 87909370 87910073 -64627186 - L1_Rod LINE L1 -1174 4673 3984 4 1255 742 333 91 15 chr5 87910089 87910617 -64626642 + Lx9 LINE L1 7060 7627 -17 4 1255 288 408 38 38 chr5 87913605 87913763 -64623496 + B4A SINE B4 8 165 -127 4 1255 1102 88 0 0 chr5 87914113 87914260 -64622999 + B1_Mus1 SINE Alu 2 148 0 4 1255 219 69 0 0 chr5 87915977 87916006 -64621253 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1255 1119 77 0 7 chr5 87916006 87916150 -64621109 - B1_Mm SINE Alu 0 147 5 4 1255 294 143 0 0 chr5 87916341 87916390 -64620869 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 4 1255 5179 99 4 12 chr5 87917116 87917872 -64619387 + L1Md_F2 LINE L1 5821 6570 -12 4 1255 1075 193 124 4 chr5 87918067 87918301 -64618958 - Lx4A LINE L1 -2 7056 6795 4 1255 247 390 24 0 chr5 87918776 87918858 -64618401 + PB1D10 SINE Alu 1 84 -33 4 1255 191 36 36 0 chr5 87918864 87918892 -64618367 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 4 1255 270 0 0 0 chr5 87919659 87919689 -64617570 + (CAA)n Simple_repeat Simple_repeat 2 31 0 4 1255 25 0 0 0 chr5 87919731 87919756 -64617503 + AT_rich Low_complexity Low_complexity 1 25 0 4 1255 885 220 14 46 chr5 87921041 87921260 -64615999 + B3 SINE B2 5 216 0 4 1255 1231 97 34 0 chr5 87921282 87921457 -64615802 - Lx LINE L1 -308 6346 6166 4 1255 28 0 0 0 chr5 87922456 87922484 -64614775 + AT_rich Low_complexity Low_complexity 1 28 0 4 1255 285 258 11 0 chr5 87922485 87922578 -64614681 - Lx9 LINE L1 -1 7643 7550 4 1255 3629 136 17 17 chr5 87922693 87922815 -64614444 + Lx2B LINE L1 6403 6524 -476 4 1255 985 208 127 46 chr5 87922815 87923122 -64614137 + IAPEY3_LTR LTR ERVK 1 332 0 4 1255 3629 136 17 17 chr5 87923122 87923291 -64613968 + Lx2B LINE L1 6525 6685 -315 4 1255 284 0 0 27 chr5 87923291 87923328 -64613931 + (CCCCCA)n Simple_repeat Simple_repeat 2 37 0 4 1255 3629 136 17 17 chr5 87923328 87923625 -64613634 + Lx2B LINE L1 6686 6991 -9 4 1255 447 19 0 0 chr5 87923775 87923827 -64613432 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1255 327 155 0 0 chr5 87923844 87923928 -64613331 + (CAGAGA)n Simple_repeat Simple_repeat 4 87 0 4 1255 313 316 21 0 chr5 87923952 87924047 -64613212 - Lx7 LINE L1 -409 7287 7191 4 1255 655 314 0 0 chr5 87924452 87924611 -64612648 + RSINE1 SINE B4 5 163 -2 4 1255 258 88 35 17 chr5 87925336 87925381 -64611878 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 4 1255 891 54 136 23 chr5 87925381 87925513 -64611746 - B1_Mm SINE Alu 0 147 1 4 1255 258 88 35 17 chr5 87925513 87925525 -64611734 + (TTTTG)n Simple_repeat Simple_repeat 3 15 0 4 1255 2321 132 38 23 chr5 87925709 87926106 -64611153 - Lx LINE L1 -8 6646 6244 4 1255 260 343 82 60 chr5 87926225 87926507 -64610752 - MT2A LTR ERVL -186 347 60 4 1255 243 0 0 0 chr5 87926770 87926797 -64610462 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1255 200 343 86 0 chr5 87926826 87926931 -64610328 - L2 LINE L2 -1781 1638 1525 4 1255 232 348 34 0 chr5 87927017 87927106 -64610153 - Lx8 LINE L1 -248 7225 7134 4 1255 207 209 0 0 chr5 87928340 87928383 -64608876 + T-rich Low_complexity Low_complexity 1 43 0 4 1255 1766 93 118 0 chr5 87928849 87929129 -64608130 + L1_Mus1 LINE L1 6255 6567 0 4 1255 189 0 0 0 chr5 87929137 87929158 -64608101 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4 1255 450 0 0 0 chr5 87929165 87929215 -64608044 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1255 286 233 81 0 chr5 87929302 87929388 -64607871 - RMER5 LTR ERV1 -114 420 328 4 1255 495 318 19 38 chr5 87929389 87929549 -64607710 + B3A SINE B2 1 157 -41 4 1255 710 344 21 21 chr5 87929573 87929858 -64607401 - RMER5 LTR ERV1 -185 349 65 4 1255 605 218 6 0 chr5 87929948 87930118 -64607141 + CT-rich Low_complexity Low_complexity 2 172 0 4 1255 231 160 20 20 chr5 87930121 87930172 -64607087 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 4 1255 266 361 8 48 chr5 87930229 87930354 -64606905 - Lx8 LINE L1 -201 7272 7153 4 1255 186 43 0 0 chr5 87933658 87933681 -64603578 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1255 22 94 0 0 chr5 87933976 87934040 -64603219 + AT_rich Low_complexity Low_complexity 1 64 0 4 1255 1548 250 110 24 chr5 87934043 87934506 -64602753 - MT2A LTR ERVL -30 503 1 4 1255 263 144 319 11 chr5 87934512 87934603 -64602656 - MERVL_2A-int LTR ERVL -7 5754 5636 4 1255 1581 101 8 4 chr5 87934662 87934911 -64602348 + Lx3_Mus LINE L1 6760 7009 0 4 1255 22 0 0 0 chr5 87935091 87935113 -64602146 + AT_rich Low_complexity Low_complexity 1 22 0 4 1255 218 311 47 47 chr5 87935288 87935416 -64601843 - MER5A DNA MER1_type -35 154 27 4 1255 411 342 10 16 chr5 87936107 87936300 -64600959 + B3A SINE B2 1 192 -6 4 1255 27 73 0 0 chr5 87936310 87936365 -64600894 + AT_rich Low_complexity Low_complexity 1 55 0 4 1255 236 109 0 68 chr5 87936444 87936503 -64600756 + T-rich Low_complexity Low_complexity 1 55 0 4 1255 9756 161 24 10 chr5 87936537 87939464 -64597795 - Lx2B LINE L1 -4 6996 4020 4 1255 8814 160 29 10 chr5 87939462 87941579 -64595680 - L1VL4 LINE L1 -1011 2604 444 4 1255 494 254 0 9 chr5 87941819 87941934 -64595325 - RMER5 LTR ERV1 -2 532 419 4 1255 588 172 8 5 chr5 87943231 87943340 -64593919 + B1_Mus1 SINE Alu 2 112 -37 4 1255 21 36 0 0 chr5 87945520 87945548 -64591711 + AT_rich Low_complexity Low_complexity 1 28 0 4 1255 23 0 0 0 chr5 87946601 87946624 -64590635 + AT_rich Low_complexity Low_complexity 1 23 0 4 1255 3255 165 13 6 chr5 87947230 87947783 -64589476 - RMER17B LTR ERVK -5 953 399 4 1255 1147 68 7 0 chr5 87947783 87947930 -64589329 + B1_Mus1 SINE Alu 1 148 0 4 1255 2131 175 50 10 chr5 87947930 87948360 -64588899 - RMER17B LTR ERVK -458 431 1 4 1255 231 167 0 0 chr5 87948360 87948402 -64588857 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1256 312 48 0 0 chr5 87949956 87949998 -64587261 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1256 473 158 0 10 chr5 87950761 87950863 -64586396 + CT-rich Low_complexity Low_complexity 3 103 0 4 1256 343 264 83 77 chr5 87950864 87951007 -64586252 - MTD LTR MaLR -51 370 197 4 1256 434 93 18 53 chr5 87951007 87951121 -64586138 + (TCTCTG)n Simple_repeat Simple_repeat 6 115 0 4 1256 1776 239 56 60 chr5 87951125 87951623 -64585636 - Lx5 LINE L1 -35 7015 6520 4 1256 2160 158 10 13 chr5 87951800 87952197 -64585062 + Lx4B LINE L1 5788 6183 -875 4 1256 12582 139 13 37 chr5 87952257 87955277 -64581982 + L1_Mus1 LINE L1 262 3212 -2671 4 1256 9781 99 1 8 chr5 87955274 87957433 -64579826 + L1_Mus1 LINE L1 4413 6555 -12 4 1256 4856 154 23 27 chr5 87957470 87957716 -64579543 + Lx4A LINE L1 6192 6433 -625 4 1256 2940 84 5 5 chr5 87957716 87958122 -64579137 + L1_Mus2 LINE L1 6161 6566 0 4 1256 4856 154 23 27 chr5 87958122 87958714 -64578545 + Lx4A LINE L1 6434 7026 -32 4 1256 246 62 0 0 chr5 87958721 87958753 -64578506 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 4 1256 1327 34 0 33 chr5 87958755 87958938 -64578321 + (GGGAGA)n Simple_repeat Simple_repeat 3 179 0 4 1256 660 59 0 0 chr5 87958938 87959022 -64578237 + (GGAA)n Simple_repeat Simple_repeat 1 85 0 4 1256 328 290 8 101 chr5 87959258 87959377 -64577882 + PB1D10 SINE Alu 10 117 0 4 1256 340 278 28 0 chr5 87959384 87959492 -64577767 + GA-rich Low_complexity Low_complexity 5 115 0 4 1256 207 266 0 0 chr5 87959814 87959878 -64577381 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1256 369 329 97 32 chr5 87959878 87960032 -64577227 - RSINE1 SINE B4 0 165 2 4 1256 21 36 0 0 chr5 87960527 87960555 -64576704 + AT_rich Low_complexity Low_complexity 1 28 0 4 1256 320 382 7 7 chr5 87960593 87960630 -64576629 + ID_B1 SINE B4 70 148 -76 4 1256 357 249 8 0 chr5 87960630 87960714 -64576545 + PB1D10 SINE Alu 26 112 -37 4 1256 320 382 7 7 chr5 87960714 87960746 -64576513 + ID_B1 SINE B4 149 222 -2 4 1256 290 214 131 94 chr5 87960997 87961157 -64576102 + MER53 DNA hAT 19 184 -9 5 1256 23 0 0 0 chr5 87962366 87962389 -64574870 + AT_rich Low_complexity Low_complexity 1 23 0 5 1256 4383 51 2 0 chr5 87963090 87963624 -64573635 - L1_Mus1 LINE L1 0 6567 6033 5 1256 244 213 40 0 chr5 87963716 87963791 -64573468 - Lx9 LINE L1 -4 7640 7563 5 1256 243 243 0 28 chr5 87965045 87965117 -64572142 - Lx2B LINE L1 -23 6977 6908 5 1256 755 133 0 8 chr5 87965922 87966051 -64571208 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 5 1256 1168 148 32 5 chr5 87966407 87966624 -64570635 + Lx2 LINE L1 6769 6991 -6 5 1256 475 118 0 0 chr5 87966739 87966807 -64570452 - L1_Mus2 LINE L1 -248 6318 6251 5 1256 1977 75 4 4 chr5 87966807 87967075 -64570184 + L1_Mus2 LINE L1 6299 6566 0 5 1256 3886 26 0 2 chr5 87967476 87967932 -64569327 + L1Md_T LINE L1 6128 6582 0 5 1256 306 50 0 0 chr5 87968137 87968177 -64569082 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1256 324 0 0 0 chr5 87968177 87968212 -64569047 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1256 231 43 22 0 chr5 87968733 87968779 -64568480 - L1Md_F2 LINE L1 0 6582 6536 5 1256 37907 30 0 0 chr5 87968783 87975213 -64562046 - L1Md_T LINE L1 0 6585 59 5 1256 573 78 0 0 chr5 87975211 87975301 -64561958 - L1Md_F2 LINE L1 -31 6551 6462 5 1256 3462 76 0 0 chr5 87975289 87975738 -64561521 + L1Md_F2 LINE L1 5992 6440 -142 5 1256 1652 280 72 22 chr5 87979080 87979661 -64557598 + Lx8 LINE L1 6214 6823 -650 5 1256 423 0 0 0 chr5 87979669 87979716 -64557543 + (TA)n Simple_repeat Simple_repeat 2 48 0 5 1256 342 258 10 30 chr5 87979726 87979826 -64557433 + GA-rich Low_complexity Low_complexity 5 102 0 5 1256 384 119 0 0 chr5 87979843 87979902 -64557357 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 1256 538 226 63 25 chr5 87980418 87980595 -64556664 - B3 SINE B2 -3 195 11 5 1256 1962 133 48 31 chr5 87980595 87980951 -64556308 - Lx LINE L1 0 6654 6293 5 1256 1179 62 0 0 chr5 87981556 87981694 -64555565 + B1_Mm SINE Alu 1 138 -9 5 1256 396 0 0 0 chr5 87981694 87981738 -64555521 + (CAAAC)n Simple_repeat Simple_repeat 2 45 0 5 1256 513 283 52 19 chr5 87981986 87982141 -64555118 + B3A SINE B2 23 182 -16 5 1256 610 364 59 11 chr5 87983168 87983526 -64553733 - MERVL_2A-int LTR ERVL -839 4922 4548 5 1256 316 330 82 39 chr5 87983853 87984134 -64553125 - L1MD1 LINE L1 -93 6149 5857 5 1256 27 0 0 0 chr5 87986295 87986322 -64550937 + AT_rich Low_complexity Low_complexity 1 27 0 5 1256 23 0 0 0 chr5 87987322 87987345 -64549914 + AT_rich Low_complexity Low_complexity 1 23 0 5 1256 395 347 132 29 chr5 87987742 87988094 -64549165 + MLT1B LTR MaLR 1 388 -2 5 1256 1637 255 72 5 chr5 87989167 87989612 -64547647 + Lx6 LINE L1 6443 6894 -566 5 1256 875 73 8 0 chr5 87990158 87990282 -64546977 + (TC)n Simple_repeat Simple_repeat 2 126 0 5 1256 305 266 70 21 chr5 87990533 87990675 -64546584 + L1M5 LINE L1 5612 5760 -413 5 1256 254 333 103 34 chr5 87990728 87990874 -64546385 - MER5A DNA MER1_type -3 186 31 5 1256 34 84 0 0 chr5 87991156 87991239 -64546020 + AT_rich Low_complexity Low_complexity 1 83 0 5 1256 255 140 0 0 chr5 87992602 87992652 -64544607 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1256 292 240 31 68 chr5 87992654 87992846 -64544413 + Lx9 LINE L1 7460 7644 0 5 1256 22 56 0 0 chr5 87994751 87994787 -64542472 + AT_rich Low_complexity Low_complexity 1 36 0 5 1256 993 242 169 0 chr5 87995705 87996007 -64541252 + Lx9 LINE L1 7256 7608 -36 5 1256 551 157 0 36 chr5 87996417 87996529 -64540730 + ORR1B1 LTR MaLR 41 148 -246 5 1256 832 121 99 0 chr5 87996525 87996666 -64540593 + ORR1B1-int LTR MaLR 1223 1377 -586 5 1256 977 304 27 6 chr5 87996691 87997028 -64540231 - Lx6 LINE L1 -26 7434 7091 5 1256 336 301 174 43 chr5 87998730 87998880 -64538379 + L1MA5A LINE L1 5446 5629 -674 5 1256 252 0 0 0 chr5 87998880 87998908 -64538351 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1256 395 319 23 46 chr5 87998908 87999125 -64538134 + L1MA5A LINE L1 5650 5861 -436 5 1256 976 266 63 4 chr5 87999691 87999944 -64537315 - MTC LTR MaLR -8 413 146 5 1256 21 57 0 0 chr5 88000318 88000353 -64536906 + AT_rich Low_complexity Low_complexity 1 35 0 1 1256 669 286 19 66 chr5 88000812 88001025 -64536234 + B3 SINE B2 1 203 -13 2 1256 304 224 20 0 chr5 88001025 88001123 -64536136 + (TA)n Simple_repeat Simple_repeat 1 100 0 3 1256 252 0 0 0 chr5 88003047 88003075 -64534184 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1256 198 103 0 0 chr5 88003133 88003162 -64534097 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1256 203 196 42 7 chr5 88004492 88004636 -64532623 + (TA)n Simple_repeat Simple_repeat 2 150 0 5 1256 246 202 44 11 chr5 88004643 88004733 -64532526 + (TATAA)n Simple_repeat Simple_repeat 1 93 0 6 1256 306 73 0 0 chr5 88004929 88004970 -64532289 + (TATATG)n Simple_repeat Simple_repeat 1 41 0 7 1256 4468 104 93 4 chr5 88005611 88006297 -64530962 - Lx2 LINE L1 -2 6995 6249 8 1256 1782 146 58 9 chr5 88006297 88006623 -64530636 - BGLII_Mus LTR ERVK -10 412 71 9 1256 1028 93 0 47 chr5 88006623 88006792 -64530467 - Lx2 LINE L1 -753 6244 6084 8 1256 220 293 0 42 chr5 88007973 88008069 -64529190 + (TATG)n Simple_repeat Simple_repeat 4 95 0 1 1256 280 370 28 9 chr5 88008356 88008465 -64528794 - PB1D10 SINE Alu -5 112 2 1 1256 228 86 0 0 chr5 88009223 88009258 -64528001 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1256 360 0 0 0 chr5 88009350 88009390 -64527869 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1256 428 105 0 13 chr5 88009390 88009467 -64527792 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 1256 22 35 0 0 chr5 88009867 88009896 -64527363 + AT_rich Low_complexity Low_complexity 1 29 0 1 1256 364 243 20 33 chr5 88010465 88010705 -64526554 + (TTTA)n Simple_repeat Simple_repeat 1 236 0 1 1256 1056 123 0 0 chr5 88010706 88010852 -64526407 - B1_Mus1 SINE Alu 0 148 3 1 1256 193 324 14 14 chr5 88010909 88010981 -64526278 - L4 LINE RTE -1649 380 309 1 1256 224 77 26 0 chr5 88011885 88011924 -64525335 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1256 351 193 24 14 chr5 88011924 88012031 -64525228 - B1_Mm SINE Alu -1 146 10 2 1256 213 65 0 0 chr5 88012258 88012289 -64524970 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1256 414 0 0 0 chr5 88012345 88012391 -64524868 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2 1256 994 75 15 0 chr5 88012391 88012524 -64524735 - B1_Mus1 SINE Alu -12 136 2 2 1256 1097 82 7 0 chr5 88013034 88013180 -64524079 - B1_Mus2 SINE Alu 0 147 1 2 1256 867 132 112 0 chr5 88013390 88013542 -64523717 - Lx3B LINE L1 -547 6426 6258 2 1256 995 76 0 65 chr5 88013540 88013694 -64523565 - Lx3B LINE L1 -1065 5908 5765 2 1256 2920 115 77 21 chr5 88013695 88014175 -64523084 + Lx3B LINE L1 6467 6973 0 2 1256 243 88 0 0 chr5 88014185 88014219 -64523040 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1256 390 129 0 0 chr5 88014623 88014685 -64522574 + (T)n Simple_repeat Simple_repeat 1 62 0 2 1256 1110 95 0 0 chr5 88016102 88016249 -64521010 - B1_Mus1 SINE Alu 0 148 2 2 1256 24 53 0 0 chr5 88016525 88016563 -64520696 + AT_rich Low_complexity Low_complexity 1 38 0 3 1256 1186 48 7 0 chr5 88016926 88017072 -64520187 - B1_Mus2 SINE Alu 0 147 1 3 1256 733 245 30 6 chr5 88017464 88017628 -64519631 + RMER20A LTR ERVK 1 168 -348 3 1256 569 222 190 55 chr5 88017621 88017950 -64519309 + RMER13A LTR ERVK 165 531 -377 3 1256 387 0 0 0 chr5 88017959 88018002 -64519257 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1256 1022 167 0 11 chr5 88018164 88018318 -64518941 + B2_Mm2 SINE B2 3 156 -39 3 1256 210 37 0 0 chr5 88018318 88018345 -64518914 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3 1256 1022 167 0 11 chr5 88018345 88018366 -64518893 + B2_Mm2 SINE B2 157 175 -20 3 1256 356 40 20 0 chr5 88018453 88018503 -64518756 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 1256 247 152 0 0 chr5 88019398 88019444 -64517815 + Lx6 LINE L1 7385 7430 -30 3 1256 803 218 77 4 chr5 88021120 88021355 -64515904 + Lx9 LINE L1 7386 7637 -7 3 1256 261 337 75 11 chr5 88022486 88022810 -64514449 - L1MC3 LINE L1 -105 6239 5875 4 1256 275 309 44 7 chr5 88023039 88023176 -64514083 - ERVL-B4-int LTR ERVL -5386 328 187 4 1256 504 48 0 0 chr5 88023271 88023334 -64513925 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 4 1256 2053 88 112 0 chr5 88023349 88023643 -64513616 - ORR1A2 LTR MaLR 0 327 1 4 1256 1720 248 221 14 chr5 88023656 88024286 -64512973 + Lx9 LINE L1 6349 7109 -535 4 1256 1367 183 143 60 chr5 88025294 88025495 -64511764 - ORR1C1 LTR MaLR 0 378 142 4 1256 1307 61 0 5 chr5 88025495 88025710 -64511549 + (TTC)n Simple_repeat Simple_repeat 1 214 0 4 1256 1367 183 143 60 chr5 88025710 88025856 -64511403 - ORR1C1 LTR MaLR -237 141 2 4 1256 276 329 12 12 chr5 88026106 88026192 -64511067 + MER2B DNA MER2_type 75 160 -176 4 1256 468 0 0 0 chr5 88026446 88026498 -64510761 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 4 1256 22 0 0 0 chr5 88026757 88026779 -64510480 + AT_rich Low_complexity Low_complexity 1 22 0 4 1256 513 0 0 0 chr5 88028032 88028089 -64509170 + (GAAA)n Simple_repeat Simple_repeat 1 57 0 5 1256 252 0 0 0 chr5 88028089 88028116 -64509143 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 5 1256 832 87 8 8 chr5 88028116 88028243 -64509016 + (GGAAA)n Simple_repeat Simple_repeat 2 129 0 5 1256 293 248 69 26 chr5 88028438 88028554 -64508705 + RCHARR1 DNA MER1_type 639 759 -215 5 1256 2969 252 74 37 chr5 88028558 88029024 -64508235 + Lx9 LINE L1 6653 7131 -513 5 1256 2070 117 88 3 chr5 88029024 88029375 -64507884 + Lx3A LINE L1 6590 6970 -11 5 1256 2969 252 74 37 chr5 88029375 88029830 -64507429 + Lx9 LINE L1 7132 7608 -36 5 1256 950 230 34 0 chr5 88029849 88030088 -64507171 + RCHARR1 DNA MER1_type 710 956 -18 5 1256 241 333 46 0 chr5 88031062 88031149 -64506110 - ID_B1 SINE B4 -44 180 90 5 1256 375 205 109 8 chr5 88031189 88031309 -64505950 - Lx9 LINE L1 -6 7638 7505 5 1256 252 86 0 0 chr5 88031309 88031344 -64505915 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1256 1972 190 43 41 chr5 88031344 88031677 -64505582 - Lx9 LINE L1 -174 7470 7137 5 1256 5509 113 46 18 chr5 88031677 88032568 -64504691 + Lx2A LINE L1 6093 7008 0 5 1256 1972 190 43 41 chr5 88032568 88032696 -64504563 - Lx9 LINE L1 -508 7136 7008 5 1256 1259 128 0 0 chr5 88033059 88033247 -64504012 - B2_Mm2 SINE B2 -7 188 1 6 1256 252 70 0 0 chr5 88034308 88034351 -64502908 - L1_Mus3 LINE L1 -20 6618 6576 6 1256 385 229 66 153 chr5 88034953 88035149 -64502110 + RLTR12B LTR ERVK 118 296 -232 6 1256 366 261 62 140 chr5 88035172 88035444 -64501815 + RLTR12B LTR ERVK 246 496 -32 6 1256 7713 102 12 12 chr5 88036106 88037953 -64499306 + L1Md_A LINE L1 452 2294 -3589 6 1256 184 292 75 58 chr5 88038874 88038994 -64498265 + L4 LINE RTE 1321 1442 -587 6 1256 305 186 14 0 chr5 88040567 88040637 -64496622 + GA-rich Low_complexity Low_complexity 3 73 0 6 1256 1328 277 49 58 chr5 88040952 88041400 -64495859 + Lx6 LINE L1 6981 7424 -36 6 1256 402 146 0 0 chr5 88041400 88041482 -64495777 + Lx9 LINE L1 7562 7643 -1 6 1256 27 29 0 0 chr5 88041488 88041522 -64495737 + AT_rich Low_complexity Low_complexity 1 34 0 6 1256 874 272 42 43 chr5 88041524 88042060 -64495199 + Lx8 LINE L1 5316 5833 -470 7 1256 4024 121 16 17 chr5 88042069 88042710 -64494549 + Lx3A LINE L1 6342 6981 0 7 1256 288 77 0 0 chr5 88042711 88042750 -64494509 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 7 1256 261 164 48 32 chr5 88042816 88042879 -64494380 + Lx8 LINE L1 5846 5909 -1564 7 1256 261 0 0 0 chr5 88042926 88042955 -64494304 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1256 405 0 0 0 chr5 88043126 88043171 -64494088 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1256 409 174 20 0 chr5 88043235 88043333 -64493926 + GA-rich Low_complexity Low_complexity 1 100 0 7 1256 2056 331 107 12 chr5 88043336 88044318 -64492941 + Lx8 LINE L1 6270 7344 -129 7 1256 6455 58 2 21 chr5 88044545 88045406 -64491853 - L1Md_F2 LINE L1 0 6582 5738 7 1256 5325 46 1 0 chr5 88045407 88046057 -64491202 + L1Md_F2 LINE L1 5075 5725 -158 7 1256 1513 277 78 9 chr5 88046337 88046788 -64490471 + Lx6 LINE L1 6953 7434 -26 7 1256 777 83 35 29 chr5 88046810 88046984 -64490275 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 7 1256 3273 101 7 13 chr5 88046984 88047447 -64489812 + RLTR13C2 LTR ERVK 350 808 0 7 1256 257 150 0 0 chr5 88047462 88047502 -64489757 + L1MC4 LINE L1 6965 7004 -1038 8 1256 252 189 14 0 chr5 88047877 88047951 -64489308 - L1MC3 LINE L1 -777 7008 6934 8 1256 4890 129 57 16 chr5 88048300 88049167 -64488092 - RMER17A2 LTR ERVK -4 902 1 8 1256 628 302 60 47 chr5 88049830 88050212 -64487047 + Lx9 LINE L1 7236 7622 -22 8 1256 2449 83 3 0 chr5 88050243 88050567 -64486692 - Lx3_Mus LINE L1 -474 6535 6211 8 1256 3124 90 40 5 chr5 88050567 88051012 -64486247 + Lx3_Mus LINE L1 6541 7001 -8 8 1256 28 0 0 0 chr5 88051526 88051554 -64485705 + AT_rich Low_complexity Low_complexity 1 28 0 8 1256 3894 100 6 0 chr5 88052224 88052762 -64484497 - L1_Mus3 LINE L1 -3 6635 6095 8 1256 6231 187 51 28 chr5 88052874 88054641 -64482618 - Lx5 LINE L1 -2 7048 5235 8 1256 378 294 0 9 chr5 88054648 88054758 -64482501 - PB1D10 SINE Alu -2 115 7 8 1256 359 375 133 59 chr5 88055306 88055561 -64481698 + B4A SINE B4 1 274 -18 8 1256 226 234 0 0 chr5 88055629 88055676 -64481583 + (CTA)n Simple_repeat Simple_repeat 1 47 0 9 1256 21 0 0 0 chr5 88055891 88055912 -64481347 + AT_rich Low_complexity Low_complexity 1 21 0 9 1256 31 0 0 0 chr5 88056074 88056105 -64481154 + AT_rich Low_complexity Low_complexity 1 31 0 9 1256 561 257 139 28 chr5 88056238 88056490 -64480769 - Lx8 LINE L1 -9 7464 7185 9 1256 1125 287 33 13 chr5 88057377 88057787 -64479472 - Lx7 LINE L1 -253 7220 6781 9 1256 1326 217 24 38 chr5 88057986 88058215 -64479044 - MTC LTR MaLR -133 288 58 9 1256 3430 85 6 11 chr5 88058215 88058692 -64478567 + MT2C_Mm LTR ERVL 1 475 0 9 1256 1326 217 24 38 chr5 88058692 88058754 -64478505 - MTC LTR MaLR -364 57 1 9 1256 5756 94 4 2 chr5 88059105 88059903 -64477356 + L1_Mus2 LINE L1 5762 6560 -6 9 1256 1093 74 0 7 chr5 88059904 88060054 -64477205 + L1_Mus1 LINE L1 6419 6567 0 9 1256 24 53 0 0 chr5 88060054 88060092 -64477167 + AT_rich Low_complexity Low_complexity 1 38 0 9 1256 2768 198 41 77 chr5 88060367 88061073 -64476186 - Lx2B LINE L1 -6 6994 6314 1 1256 890 245 56 106 chr5 88061197 88061557 -64475702 + RCHARR1 DNA MER1_type 180 521 -453 1 1256 266 0 0 29 chr5 88061708 88061743 -64475516 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1256 1118 65 0 0 chr5 88061743 88061881 -64475378 - B1_Mus1 SINE Alu -9 139 2 1 1256 1317 123 22 70 chr5 88063075 88063346 -64473913 - Lx LINE L1 -1 6653 6396 1 1256 4162 44 0 0 chr5 88063400 88063904 -64473355 + L1Md_T LINE L1 6079 6582 0 1 1256 230 231 39 0 chr5 88064182 88064234 -64473025 + MIRb SINE MIR 45 98 -170 1 1256 2922 84 62 2 chr5 88064874 88065292 -64471967 - Lx3_Mus LINE L1 -16 6993 6551 1 1256 6668 98 6 4 chr5 88065292 88066626 -64470633 + Lx3_Mus LINE L1 5211 6545 -464 1 1256 24 67 0 0 chr5 88066633 88066678 -64470581 + AT_rich Low_complexity Low_complexity 1 45 0 1 1256 24 53 0 0 chr5 88066745 88066783 -64470476 + AT_rich Low_complexity Low_complexity 1 38 0 1 1256 7157 112 13 15 chr5 88067128 88068227 -64469032 + Lx2 LINE L1 5901 6997 0 1 1256 3808 155 6 22 chr5 88068905 88069572 -64467687 + Lx2 LINE L1 6341 6996 -1 1 1256 5193 104 85 6 chr5 88070010 88070600 -64466659 - Lx2A1 LINE L1 -2 7006 6392 1 1256 522 0 0 0 chr5 88070600 88070658 -64466601 + (TTTA)n Simple_repeat Simple_repeat 4 61 0 1 1256 5193 104 85 6 chr5 88070658 88070888 -64466371 - Lx2A1 LINE L1 -617 6391 6123 1 1256 270 0 0 0 chr5 88071284 88071314 -64465945 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1 1256 4370 85 11 11 chr5 88071316 88071938 -64465321 - Lx3A LINE L1 -16 6965 6344 1 1256 2021 114 153 0 chr5 88072097 88072431 -64464828 - Lx LINE L1 -12 6642 6258 1 1256 447 210 0 53 chr5 88072739 88072890 -64464369 + Lx9 LINE L1 7495 7637 -7 1 1256 297 349 46 0 chr5 88073015 88073124 -64464135 - PB1D10 SINE Alu 0 117 4 1 1256 25 51 0 0 chr5 88073224 88073263 -64463996 + AT_rich Low_complexity Low_complexity 1 39 0 1 1256 1997 221 57 88 chr5 88074421 88074456 -64462803 - RLTR40 LTR ERVK -218 599 570 1 1256 357 24 0 0 chr5 88074456 88074498 -64462761 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1256 348 24 0 0 chr5 88074498 88074538 -64462721 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1256 1997 221 57 88 chr5 88074538 88074707 -64462552 - RLTR40 LTR ERVK -248 569 399 1 1256 438 20 0 0 chr5 88074707 88074758 -64462501 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1256 1997 221 57 88 chr5 88074758 88075161 -64462098 - RLTR40 LTR ERVK -419 398 10 1 1256 5355 97 7 66 chr5 88075734 88076587 -64460672 - RLTR13B4 LTR ERVK 0 803 1 1 1256 238 238 0 0 chr5 88076654 88076696 -64460563 + RLTR28B LTR ERVL 1 42 -439 1 1256 339 352 110 8 chr5 88077068 88077346 -64459913 + Lx8 LINE L1 7189 7456 -188 1 1256 25 75 0 0 chr5 88077390 88077443 -64459816 + AT_rich Low_complexity Low_complexity 1 53 0 1 1256 226 237 18 134 chr5 88077554 88077666 -64459593 - RMER12B LTR ERVK -1030 374 276 1 1256 201 39 0 0 chr5 88077694 88077720 -64459539 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1256 29 0 0 0 chr5 88077787 88077816 -64459443 + AT_rich Low_complexity Low_complexity 1 29 0 1 1256 241 251 79 69 chr5 88077825 88077983 -64459276 + MTC LTR MaLR 9 197 -222 1 1256 218 351 70 54 chr5 88079158 88079456 -64457803 + L2 LINE L2 2735 3037 -382 1 1256 300 53 0 0 chr5 88079662 88079700 -64457559 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 19 2407 244 31 34 chr5 88079827 88080473 -64456786 - Lx7 LINE L1 -214 7482 6839 1 1257 5173 26 0 0 chr5 88081217 88081824 -64455435 + L1Md_F2 LINE L1 4980 5586 -297 1 1257 8115 45 1 2 chr5 88081825 88082819 -64454440 + L1Md_F2 LINE L1 5588 6580 -2 1 1257 23 0 0 0 chr5 88083611 88083634 -64453625 + AT_rich Low_complexity Low_complexity 1 23 0 1 1257 1932 146 51 17 chr5 88083868 88084224 -64453035 - RLTR9A LTR ERVK 0 368 1 1 1257 221 254 14 27 chr5 88084226 88084299 -64452960 + A-rich Low_complexity Low_complexity 5 76 0 1 1257 847 324 90 13 chr5 88084672 88084879 -64452380 + L1_Mur3 LINE L1 104 337 -7391 1 1257 492 18 0 0 chr5 88084879 88084936 -64452323 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1257 976 300 50 7 chr5 88084936 88085353 -64451906 + L1_Mur3 LINE L1 103 698 -7030 1 1257 1276 220 43 13 chr5 88085403 88085823 -64451436 + L1_Mur3 LINE L1 904 1277 -2638 1 1257 697 83 9 18 chr5 88085855 88085966 -64451293 + (GAAA)n Simple_repeat Simple_repeat 4 113 0 1 1257 3510 218 53 37 chr5 88085967 88086815 -64450444 + L1_Mur3 LINE L1 1175 2063 -3817 1 1257 180 77 0 0 chr5 88086815 88086841 -64450418 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1257 3510 217 54 38 chr5 88086841 88087079 -64450180 + L1_Mur3 LINE L1 2064 2284 -3596 1 1257 1147 121 16 16 chr5 88087101 88087286 -64449973 - Lx5 LINE L1 -1202 5848 5664 1 1257 390 141 0 0 chr5 88087292 88087356 -64449903 + Lx4A LINE L1 5962 6025 -1033 1 1257 1170 61 7 0 chr5 88087356 88087503 -64449756 + B1_Mus1 SINE Alu 1 148 0 1 1257 420 143 0 0 chr5 88087506 88087604 -64449655 + (A)n Simple_repeat Simple_repeat 1 98 0 1 1257 5206 170 76 18 chr5 88087604 88088594 -64448665 + Lx4A LINE L1 6010 7056 -2 1 1257 745 131 0 21 chr5 88088624 88088653 -64448606 + polypurine Low_complexity Low_complexity 2 29 0 1 1257 1202 33 0 37 chr5 88088653 88088840 -64448419 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1257 745 131 0 21 chr5 88088840 88088951 -64448308 + polypurine Low_complexity Low_complexity 30 139 0 1 1257 623 301 31 28 chr5 88088979 88089266 -64447993 + B4A SINE B4 3 290 -2 1 1257 23 86 0 0 chr5 88089371 88089429 -64447830 + AT_rich Low_complexity Low_complexity 1 58 0 1 1257 50 0 0 0 chr5 88089556 88089606 -64447653 + AT_rich Low_complexity Low_complexity 1 50 0 1 1257 210 143 0 0 chr5 88092776 88092811 -64444448 + (GAA)n Simple_repeat Simple_repeat 2 36 0 1 1257 21 0 0 0 chr5 88094596 88094617 -64442642 + AT_rich Low_complexity Low_complexity 1 21 0 1 1257 397 324 13 86 chr5 88095868 88096020 -64441239 + RSINE1 SINE B4 3 143 -22 1 1257 26 0 0 0 chr5 88096560 88096586 -64440673 + AT_rich Low_complexity Low_complexity 1 26 0 1 1257 24 53 0 0 chr5 88096873 88096911 -64440348 + AT_rich Low_complexity Low_complexity 1 38 0 1 1257 22 35 0 0 chr5 88096980 88097009 -64440250 + AT_rich Low_complexity Low_complexity 1 29 0 1 1257 328 297 50 148 chr5 88097542 88097704 -64439555 + RSINE1 SINE B4 2 151 -14 1 1257 318 26 0 0 chr5 88097704 88097743 -64439516 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1257 328 297 50 148 chr5 88097743 88097762 -64439497 + RSINE1 SINE B4 152 165 0 1 1257 360 43 0 0 chr5 88097766 88097812 -64439447 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1257 37 39 0 0 chr5 88099041 88099092 -64438167 + AT_rich Low_complexity Low_complexity 1 51 0 1 1257 312 215 131 0 chr5 88099094 88099201 -64438058 - Lx9 LINE L1 -2 7642 7522 1 1257 351 61 14 43 chr5 88099201 88099270 -64437989 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1 1257 1020 206 33 0 chr5 88099272 88099486 -64437773 - Lx9 LINE L1 -162 7482 7262 1 1257 326 167 0 0 chr5 88099487 88099541 -64437718 + Lx9 LINE L1 7194 7247 -397 1 1257 21 36 0 0 chr5 88103867 88103895 -64433364 + AT_rich Low_complexity Low_complexity 1 28 0 1 1257 23 33 0 0 chr5 88104790 88104820 -64432439 + AT_rich Low_complexity Low_complexity 1 30 0 1 1257 29 47 0 0 chr5 88104902 88104945 -64432314 + AT_rich Low_complexity Low_complexity 1 43 0 1 1257 27 62 0 0 chr5 88105027 88105075 -64432184 + AT_rich Low_complexity Low_complexity 1 48 0 1 1257 25 0 0 0 chr5 88105179 88105204 -64432055 + AT_rich Low_complexity Low_complexity 1 25 0 1 1257 24 67 0 0 chr5 88105284 88105329 -64431930 + AT_rich Low_complexity Low_complexity 1 45 0 1 1257 27 49 0 0 chr5 88105406 88105447 -64431812 + AT_rich Low_complexity Low_complexity 1 41 0 1 1257 21 57 0 0 chr5 88105651 88105686 -64431573 + AT_rich Low_complexity Low_complexity 1 35 0 1 1257 28 48 0 0 chr5 88106542 88106584 -64430675 + AT_rich Low_complexity Low_complexity 1 42 0 1 1257 636 94 0 0 chr5 88107199 88107305 -64429954 + (TC)n Simple_repeat Simple_repeat 1 106 0 1 1257 501 32 0 0 chr5 88108097 88108160 -64429099 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1257 324 111 0 0 chr5 88108162 88108216 -64429043 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1257 26 50 0 0 chr5 88109158 88109198 -64428061 + AT_rich Low_complexity Low_complexity 1 40 0 1 1257 630 122 0 0 chr5 88109259 88109357 -64427902 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1257 22 70 0 0 chr5 88109398 88109441 -64427818 + AT_rich Low_complexity Low_complexity 1 43 0 1 1257 279 0 0 0 chr5 88110871 88110902 -64426357 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1257 2854 93 26 26 chr5 88112171 88112600 -64424659 - L1_Mus4 LINE L1 -6 6630 6202 1 1257 3103 58 179 5 chr5 88112751 88113187 -64424072 + RLTR1B LTR ERV1 1 512 0 1 1257 3122 103 7 4 chr5 88113672 88114132 -64423127 - L1_Mus3 LINE L1 -2 6636 6176 1 1257 2198 126 22 79 chr5 88114133 88114537 -64422722 - RLTR9C LTR ERVK 0 393 13 1 1257 1523 100 8 38 chr5 88114465 88114726 -64422533 - MTB_Mm LTR MaLR -154 253 1 1 1257 2994 173 21 17 chr5 88114726 88115301 -64421958 - L1_Mur2 LINE L1 -39 5838 5262 1 1257 1072 194 70 4 chr5 88115307 88115535 -64421724 - L1_Mur2 LINE L1 -832 5048 4806 1 1257 1156 225 44 85 chr5 88115535 88115965 -64421294 - RLTR21 LTR ERVK -118 1454 1076 1 1257 2118 198 50 31 chr5 88115965 88116251 -64421008 + L1_Mur3 LINE L1 1494 1781 -4099 1 1257 1619 157 32 84 chr5 88116251 88116598 -64420661 - ORR1A4 LTR MaLR 0 329 1 1 1257 9384 156 57 58 chr5 88116598 88118563 -64418696 - ORR1A4-int LTR MaLR 0 1963 1 1 1257 1903 143 3 60 chr5 88118563 88118912 -64418347 - ORR1A4 LTR MaLR 0 329 1 1 1257 2118 198 50 31 chr5 88118912 88119165 -64418094 + L1_Mur3 LINE L1 1782 2043 -3837 1 1257 1795 201 68 24 chr5 88119179 88119588 -64417671 - RMER1B Other Other 0 1066 640 1 1257 225 240 165 29 chr5 88119597 88119700 -64417559 - MIR SINE MIR -56 206 90 1 1257 242 273 78 29 chr5 88121408 88121510 -64415749 - B1F SINE Alu 0 149 43 1 1257 907 154 145 58 chr5 88122019 88122226 -64415033 - URR1A DNA MER1_type 0 226 2 1 1257 456 67 0 0 chr5 88122915 88122975 -64414284 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 1 1257 26 30 0 0 chr5 88126499 88126532 -64410727 + AT_rich Low_complexity Low_complexity 1 33 0 1 1257 30 0 0 0 chr5 88127492 88127522 -64409737 + AT_rich Low_complexity Low_complexity 1 30 0 1 1257 22 0 0 0 chr5 88128707 88128729 -64408530 + GC_rich Low_complexity Low_complexity 1 22 0 1 1257 345 180 0 0 chr5 88129157 88129246 -64408013 + CT-rich Low_complexity Low_complexity 2 90 0 1 1257 3548 58 0 2 chr5 88129461 88129912 -64407347 - L1Md_F3 LINE L1 0 6584 6135 1 1257 2746 35 20 0 chr5 88130067 88130412 -64406847 - L1Md_F3 LINE L1 0 6584 6233 2 1257 1209 55 0 0 chr5 88130866 88131012 -64406247 + B1_Mm SINE Alu 1 146 -1 2 1257 942 95 0 0 chr5 88131013 88131161 -64406098 + (GAA)n Simple_repeat Simple_repeat 3 150 0 2 1257 459 224 152 0 chr5 88131328 88131453 -64405806 + B1_Mur3 SINE Alu 1 144 -5 2 1257 4841 52 0 7 chr5 88131920 88132525 -64404734 + L1Md_F2 LINE L1 5969 6569 -13 2 1257 965 117 0 38 chr5 88133324 88133510 -64403749 + CT-rich Low_complexity Low_complexity 1 179 0 2 1257 1076 133 0 6 chr5 88133510 88133691 -64403568 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1257 269 349 82 37 chr5 88136889 88137023 -64400236 + B4A SINE B4 1 140 -152 2 1257 1187 156 33 5 chr5 88137493 88137706 -64399553 + URR1B DNA MER1_type 7 225 0 2 1257 200 189 0 0 chr5 88137942 88137979 -64399280 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1257 261 172 0 0 chr5 88138086 88138150 -64399109 + CT-rich Low_complexity Low_complexity 3 66 0 2 1257 2924 267 73 108 chr5 88138179 88139377 -64397882 - Lx5 LINE L1 -1 7049 5894 2 1257 396 59 0 0 chr5 88139377 88139428 -64397831 + (TCTCCC)n Simple_repeat Simple_repeat 3 53 0 2 1257 5465 196 25 12 chr5 88139429 88140602 -64396657 - L1_Mur2 LINE L1 -391 5486 4299 2 1257 628 189 168 18 chr5 88140614 88140781 -64396478 - L1_Mur2 LINE L1 -3603 2274 2083 2 1257 207 0 0 0 chr5 88140781 88140804 -64396455 + (TGG)n Simple_repeat Simple_repeat 1 23 0 2 1257 4544 106 27 31 chr5 88140804 88141335 -64395924 - RLTR22_Mus LTR ERVK 0 1808 1292 2 1257 495 0 0 0 chr5 88141335 88141390 -64395869 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1257 4544 106 27 31 chr5 88141390 88141569 -64395690 - RLTR22_Mus LTR ERVK -517 1291 1102 2 1257 21 0 0 0 chr5 88141569 88141590 -64395669 + AT_rich Low_complexity Low_complexity 1 21 0 2 1257 608 164 146 15 chr5 88142416 88142546 -64394713 - RLTR12B LTR ERVK -381 147 1 2 1257 325 314 22 34 chr5 88143011 88143100 -64394159 + RSINE1 SINE B4 76 163 -2 2 1257 333 0 0 0 chr5 88143113 88143150 -64394109 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 1257 428 320 47 27 chr5 88143236 88143493 -64393766 + L1M2 LINE L1 4731 4992 -1151 2 1257 473 172 0 22 chr5 88143883 88143908 -64393351 + polypyrimidine Low_complexity Low_complexity 111 135 0 2 1257 420 20 0 0 chr5 88143908 88143957 -64393302 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1257 473 172 0 22 chr5 88143957 88144068 -64393191 + CT-rich Low_complexity Low_complexity 2 110 0 2 1257 620 328 56 67 chr5 88144965 88145324 -64391935 + MTEa LTR MaLR 25 379 0 2 1257 1103 45 8 0 chr5 88145347 88145481 -64391778 + B1_Mus1 SINE Alu 2 136 -12 2 1257 417 86 0 0 chr5 88145481 88145539 -64391720 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 2 1257 1493 233 79 19 chr5 88145753 88146121 -64391138 + ORR1B1 LTR MaLR 1 390 -4 2 1257 2799 147 35 11 chr5 88146130 88146592 -64390667 + Lx4A LINE L1 6485 6957 -101 2 1257 7419 53 7 0 chr5 88147170 88148110 -64389149 + L1Md_F2 LINE L1 5633 6579 -3 2 1257 1095 102 0 0 chr5 88148137 88148284 -64388975 + B1_Mus1 SINE Alu 2 148 0 2 1257 1093 259 129 39 chr5 88148441 88148830 -64388429 + Lx9 LINE L1 7077 7478 -166 2 1257 981 136 0 0 chr5 88148830 88149007 -64388252 + (CA)n Simple_repeat Simple_repeat 2 178 0 2 1257 1093 259 129 39 chr5 88149007 88149136 -64388123 + Lx9 LINE L1 7479 7641 -3 2 1257 22 56 0 0 chr5 88149137 88149173 -64388086 + AT_rich Low_complexity Low_complexity 1 36 0 2 1257 304 252 169 8 chr5 88150365 88150489 -64386770 + Lx6 LINE L1 7302 7445 -15 2 1257 255 255 0 18 chr5 88150627 88150683 -64386576 + B1_Mus1 SINE Alu 1 55 -93 2 1257 33 56 0 0 chr5 88151489 88151543 -64385716 + AT_rich Low_complexity Low_complexity 1 54 0 2 1257 7168 113 12 25 chr5 88152008 88153258 -64384001 - L1_Mus2 LINE L1 0 6566 5308 2 1257 519 114 0 0 chr5 88153258 88153328 -64383931 - B1_Mus2 SINE Alu -77 70 1 2 1257 7168 113 12 25 chr5 88153328 88153405 -64383854 - L1_Mus2 LINE L1 0 5307 5229 2 1257 198 0 0 0 chr5 88153405 88153427 -64383832 + (TA)n Simple_repeat Simple_repeat 1 22 0 2 1257 6797 189 13 52 chr5 88153427 88154193 -64383066 - L1_Mus2 LINE L1 -649 5228 4462 2 1257 186 193 0 0 chr5 88154197 88154254 -64383005 + A-rich Low_complexity Low_complexity 1 57 0 2 1257 321 288 26 26 chr5 88154919 88155033 -64382226 + L1MEc LINE L1 556 669 -5731 2 1257 30 45 0 0 chr5 88155920 88155964 -64381295 + AT_rich Low_complexity Low_complexity 1 44 0 2 1257 3853 142 19 6 chr5 88156156 88156781 -64380478 - Lx3B LINE L1 -4 6969 6337 2 1257 22 70 0 0 chr5 88157451 88157494 -64379765 + AT_rich Low_complexity Low_complexity 1 43 0 2 1257 206 243 29 0 chr5 88157616 88157686 -64379573 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 2 1257 977 294 39 19 chr5 88157804 88158113 -64379146 - Lx6 LINE L1 -26 7434 7120 2 1257 820 315 121 20 chr5 88159038 88159485 -64377774 + Lx8 LINE L1 6621 7112 -361 2 1257 791 217 28 56 chr5 88160003 88160218 -64377041 - RMER5 LTR ERV1 -325 209 1 2 1257 290 185 0 0 chr5 88161703 88161757 -64375502 - B3 SINE B2 -161 55 2 2 1257 504 309 116 20 chr5 88161760 88161958 -64375301 - B4A SINE B4 -64 228 12 2 1257 3083 289 75 43 chr5 88163113 88164618 -64372641 + RMER1A Other Other 2 1026 -4 2 1257 7096 125 5 119 chr5 88165091 88166521 -64370738 - L1_Mm LINE L1 -294 5589 4323 2 1257 21 36 0 0 chr5 88167378 88167406 -64369853 + AT_rich Low_complexity Low_complexity 1 28 0 2 1257 1234 117 0 0 chr5 88168230 88168409 -64368850 + RLTR9B2 LTR ERVK 241 419 -1 2 1257 2856 129 14 2 chr5 88168410 88168853 -64368406 + L1_Mm LINE L1 5234 5681 -202 2 1257 324 279 115 8 chr5 88169088 88169218 -64368041 + Lx6 LINE L1 7302 7445 -15 2 1257 256 291 0 0 chr5 88169361 88169416 -64367843 + B1_Mus1 SINE Alu 1 55 -93 2 1257 35 41 0 0 chr5 88169568 88169617 -64367642 + AT_rich Low_complexity Low_complexity 1 49 0 2 1257 28 0 0 0 chr5 88170326 88170354 -64366905 + AT_rich Low_complexity Low_complexity 1 28 0 2 1257 180 0 0 0 chr5 88170383 88170403 -64366856 + (TTTTTG)n Simple_repeat Simple_repeat 6 25 0 2 1257 1713 50 9 0 chr5 88171740 88171961 -64365298 - L1_Mus2 LINE L1 0 6566 6344 2 1257 825 199 176 4 chr5 88172187 88172449 -64364810 + RMER12 LTR ERVK 1 307 -1015 2 1257 31 0 0 0 chr5 88172536 88172567 -64364692 + AT_rich Low_complexity Low_complexity 1 31 0 2 1257 213 39 0 0 chr5 88172572 88172598 -64364661 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 1257 2747 120 36 0 chr5 88172598 88173014 -64364245 - Lx3A LINE L1 -12 6969 6539 2 1257 573 39 0 0 chr5 88173026 88173103 -64364156 - L1_Mus2 LINE L1 -28 6538 6462 2 1257 507 287 179 47 chr5 88173142 88173677 -64363582 + RMER12 LTR ERVK 491 1288 -116 2 1257 1284 89 0 0 chr5 88173679 88173859 -64363400 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 2 1257 477 90 0 0 chr5 88173859 88173926 -64363333 + (TCCCC)n Simple_repeat Simple_repeat 5 71 0 2 1257 999 219 87 21 chr5 88173946 88174309 -64362950 + RMER12 LTR ERVK 988 1322 0 2 1257 39347 30 2 6 chr5 88174446 88180638 -64356621 - L1Md_T LINE L1 0 6582 422 2 1257 550 71 0 0 chr5 88180639 88180723 -64356536 - L1_Mus1 LINE L1 -9 6558 6475 2 1257 497 16 16 0 chr5 88180801 88180863 -64356396 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 2 1257 1219 124 0 26 chr5 88181048 88181239 -64356020 + B2_Mm2 SINE B2 2 187 -8 2 1257 401 285 171 52 chr5 88181244 88181625 -64355634 + RLTR40 LTR ERVK 145 570 -247 2 1257 23 0 0 0 chr5 88183723 88183746 -64353513 + AT_rich Low_complexity Low_complexity 1 23 0 2 1257 946 314 122 20 chr5 88184068 88184627 -64352632 - Lx8 LINE L1 -50 7423 6808 2 1257 783 286 12 12 chr5 88184646 88184887 -64352372 - Lx7 LINE L1 -440 7256 7016 2 1257 27 73 0 0 chr5 88184911 88184966 -64352293 + AT_rich Low_complexity Low_complexity 1 55 0 2 1257 559 75 75 0 chr5 88185040 88185133 -64352126 - Lx2 LINE L1 -1 6996 6897 2 1257 1154 43 0 0 chr5 88185660 88185798 -64351461 - B1_Mus1 SINE Alu -7 141 4 2 1257 270 0 0 0 chr5 88186338 88186368 -64350891 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2 1257 390 21 0 0 chr5 88186368 88186414 -64350845 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1257 383 319 82 24 chr5 88186580 88186750 -64350509 + Lx8 LINE L1 7162 7341 -132 2 1257 207 0 0 0 chr5 88186763 88186786 -64350473 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1257 2840 169 24 63 chr5 88186806 88187437 -64349822 + RMER6C LTR ERVK 85 690 0 2 1257 300 256 0 11 chr5 88187447 88187538 -64349721 + Lx8 LINE L1 7383 7472 -1 2 1257 3019 199 35 8 chr5 88188953 88189555 -64347704 - RLTR17 LTR ERVK -74 618 1 2 1257 6122 126 78 2 chr5 88189601 88190569 -64346690 - L1_Mus4 LINE L1 -7 6629 5588 2 1257 7536 144 25 2 chr5 88190578 88191840 -64345419 + L1_Mus4 LINE L1 4300 5589 -294 2 1257 2650 261 75 8 chr5 88192318 88193100 -64344159 - RMER1B Other Other -4 1062 172 2 1257 723 268 0 0 chr5 88193101 88193265 -64343994 - RMER1B Other Other -858 208 45 2 1257 791 217 28 56 chr5 88194723 88194938 -64342321 + RMER5 LTR ERV1 1 209 -325 2 1257 910 306 128 27 chr5 88195458 88195905 -64341354 - Lx8 LINE L1 -361 7112 6621 2 1257 848 290 74 20 chr5 88196838 88197137 -64340122 + Lx6 LINE L1 7120 7434 -26 2 1257 184 77 51 0 chr5 88197286 88197325 -64339934 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 2 1257 21 71 0 0 chr5 88197452 88197494 -64339765 + AT_rich Low_complexity Low_complexity 1 42 0 2 1257 3827 136 34 5 chr5 88198176 88198790 -64338469 + Lx3B LINE L1 6338 6969 -4 2 1257 221 318 43 72 chr5 88199417 88199556 -64337703 - BC1_Mm scRNA scRNA -16 136 2 2 1257 309 288 26 26 chr5 88199943 88200057 -64337202 - L1MEc LINE L1 -5731 669 556 2 1257 249 33 0 0 chr5 88200466 88200496 -64336763 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1257 1089 65 7 0 chr5 88200496 88200634 -64336625 - B1_Mus1 SINE Alu -9 139 1 3 1257 269 100 20 0 chr5 88200920 88200970 -64336289 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1257 3798 154 8 62 chr5 88200971 88201129 -64336130 + L1_Mm LINE L1 4463 4619 -1264 3 1257 2514 119 20 32 chr5 88201129 88201537 -64335722 - RLTR9D LTR ERVK 0 403 1 3 1257 3798 154 8 62 chr5 88201537 88202134 -64335125 + L1_Mm LINE L1 4620 5177 -706 3 1257 321 26 0 0 chr5 88202134 88202172 -64335087 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 3 1257 242 163 0 0 chr5 88202172 88202215 -64335044 + L1_Mur2 LINE L1 4662 4704 -1173 3 1257 812 250 42 38 chr5 88202753 88203015 -64334244 + Lx6 LINE L1 7168 7430 -30 3 1257 487 343 39 0 chr5 88203029 88203059 -64334200 + B3 SINE B2 27 56 -160 3 1257 280 0 24 24 chr5 88203059 88203100 -64334159 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 1257 487 343 39 0 chr5 88203100 88203247 -64334012 + B3 SINE B2 57 210 -6 3 1257 187 305 21 84 chr5 88203911 88204054 -64333205 + MIRb SINE MIR 107 240 -28 3 1257 23 33 0 0 chr5 88205255 88205285 -64331974 + AT_rich Low_complexity Low_complexity 1 30 0 3 1257 468 359 21 64 chr5 88205306 88205586 -64331673 + B4A SINE B4 11 278 -14 3 1257 489 62 0 0 chr5 88205615 88205680 -64331579 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1257 423 0 0 0 chr5 88206208 88206255 -64331004 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1257 352 282 28 29 chr5 88206264 88206388 -64330871 - RSINE1 SINE B4 -34 131 9 3 1257 24 0 0 0 chr5 88206887 88206911 -64330348 + AT_rich Low_complexity Low_complexity 1 24 0 3 1257 24 32 0 0 chr5 88207946 88207977 -64329282 + AT_rich Low_complexity Low_complexity 1 31 0 3 1257 277 308 11 47 chr5 88208605 88208714 -64328545 - B1F SINE Alu -12 108 10 3 1257 1144 62 7 0 chr5 88209739 88209885 -64327374 + B1_Mus2 SINE Alu 1 147 0 3 1257 321 25 0 0 chr5 88209885 88209919 -64327340 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1257 246 123 14 58 chr5 88210151 88210220 -64327039 + (TTTG)n Simple_repeat Simple_repeat 3 68 0 3 1257 321 47 0 0 chr5 88210220 88210263 -64326996 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 3 1258 1487 261 11 11 chr5 88211532 88211893 -64325366 - Lx5 LINE L1 0 7050 6690 3 1258 405 0 0 0 chr5 88212224 88212269 -64324990 + (TATG)n Simple_repeat Simple_repeat 3 47 0 3 1258 674 300 35 21 chr5 88212273 88212541 -64324718 - Lx9 LINE L1 -274 7370 7000 3 1258 22 56 0 0 chr5 88214488 88214524 -64322735 + AT_rich Low_complexity Low_complexity 1 36 0 3 1258 217 167 56 0 chr5 88215752 88215806 -64321453 + (TATAA)n Simple_repeat Simple_repeat 4 60 0 3 1258 387 316 25 54 chr5 88216069 88216273 -64320986 - B3A SINE B2 0 198 1 3 1258 21 0 0 0 chr5 88216335 88216356 -64320903 + AT_rich Low_complexity Low_complexity 1 21 0 3 1258 5888 194 53 9 chr5 88218250 88220537 -64316722 - Lx4B LINE L1 -114 6886 4598 3 1258 7437 103 17 2 chr5 88221195 88222569 -64314690 - L1_Mus3 LINE L1 -7 6631 5237 3 1258 5815 90 11 16 chr5 88222789 88223659 -64313600 + RLTR22_Mus LTR ERVK 1 866 -942 3 1258 338 321 43 82 chr5 88223895 88224126 -64313133 + RMER12 LTR ERVK 1101 1322 0 3 1258 2948 116 86 41 chr5 88224469 88225002 -64312257 + Lx3A LINE L1 5680 6236 -745 3 1258 1011 116 39 73 chr5 88225002 88225206 -64312053 + Lx3_Mus LINE L1 6800 6996 -13 3 1258 8435 32 0 0 chr5 88225611 88226605 -64310654 + L1Md_T LINE L1 5588 6581 -1 3 1258 633 217 150 0 chr5 88226652 88226892 -64310367 - Lx9 LINE L1 0 7644 7369 3 1258 1090 76 0 0 chr5 88226974 88227118 -64310141 - B1_Mus1 SINE Alu -3 145 2 3 1258 524 286 84 57 chr5 88227411 88227858 -64309401 + RLTR12B LTR ERVK 5 339 -20 3 1258 1277 51 0 0 chr5 88227862 88228018 -64309241 - L1Md_F2 LINE L1 -410 6172 6017 3 1258 2451 44 18 28 chr5 88228018 88228345 -64308914 + L1Md_F2 LINE L1 6259 6582 0 3 1258 237 299 17 25 chr5 88228662 88228782 -64308477 + L1M2 LINE L1 3357 3475 -2668 3 1258 409 331 12 19 chr5 88228810 88228970 -64308289 + RSINE1 SINE B4 2 160 -5 3 1258 1476 33 0 0 chr5 88228973 88229219 -64308040 + (CCA)n Simple_repeat Simple_repeat 1 246 0 3 1258 1461 39 0 0 chr5 88229230 88229410 -64307849 + (CCA)n Simple_repeat Simple_repeat 1 180 0 3 1258 417 186 96 19 chr5 88229447 88229551 -64307708 + L1M2 LINE L1 3505 3616 -2527 3 1258 603 102 0 0 chr5 88229963 88230051 -64307208 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 1258 417 255 70 14 chr5 88230807 88230961 -64306298 - L1MA7 LINE L1 -202 6089 5929 3 1258 436 238 0 10 chr5 88231117 88231219 -64306040 + Lx8 LINE L1 6798 6898 -575 3 1258 314 161 36 0 chr5 88231219 88231275 -64305984 + RMER6D LTR ERVK 1 58 -662 3 1258 2487 90 6 0 chr5 88231275 88231621 -64305638 + L1_Mm LINE L1 5226 5573 -310 3 1258 4741 74 27 0 chr5 88231621 88232258 -64305001 + L1_Mus2 LINE L1 5913 6566 0 3 1258 3184 156 61 41 chr5 88232273 88232902 -64304357 + RMER6D LTR ERVK 71 712 -8 3 1258 543 31 0 0 chr5 88232902 88232967 -64304292 + (TCTA)n Simple_repeat Simple_repeat 3 67 0 3 1258 511 242 81 25 chr5 88232995 88233156 -64304103 + Lx7 LINE L1 7187 7356 -340 3 1258 202 143 24 0 chr5 88233156 88233198 -64304061 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1258 297 128 0 21 chr5 88233198 88233246 -64304013 - B1_Mus2 SINE Alu -6 141 95 3 1258 549 0 0 0 chr5 88233627 88233688 -64303571 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 3 1258 1163 56 0 0 chr5 88233773 88233916 -64303343 + B1_Mm SINE Alu 1 143 -4 3 1258 387 0 0 0 chr5 88233917 88233960 -64303299 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1258 468 77 0 0 chr5 88236110 88236175 -64301084 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 1258 269 287 37 130 chr5 88238381 88238489 -64298770 + B3A SINE B2 1 98 -118 3 1258 621 262 24 53 chr5 88240137 88240306 -64296953 - Lx6 LINE L1 -237 7223 7060 3 1258 405 0 0 0 chr5 88240307 88240352 -64296907 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1258 1728 209 24 30 chr5 88240363 88240733 -64296526 - Lx6 LINE L1 -709 6751 6384 3 1258 792 286 137 12 chr5 88241022 88241351 -64295908 + ORR1D1 LTR MaLR 3 372 -2 3 1258 564 374 12 0 chr5 88241570 88241733 -64295526 - RSINE1 SINE B4 0 165 1 3 1258 585 187 148 57 chr5 88242352 88242562 -64294697 + Lx9 LINE L1 7415 7643 -1 3 1258 22 0 0 0 chr5 88243017 88243039 -64294220 + AT_rich Low_complexity Low_complexity 1 22 0 3 1258 22 35 0 0 chr5 88243386 88243415 -64293844 + AT_rich Low_complexity Low_complexity 1 29 0 3 1258 198 0 0 0 chr5 88244066 88244088 -64293171 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1258 1099 77 32 0 chr5 88244280 88244435 -64292824 - B2_Mm1t SINE B2 -3 190 31 3 1258 23 0 0 0 chr5 88245518 88245541 -64291718 + AT_rich Low_complexity Low_complexity 1 23 0 3 1258 34 24 0 0 chr5 88245713 88245754 -64291505 + AT_rich Low_complexity Low_complexity 1 41 0 3 1258 22 0 0 0 chr5 88246040 88246062 -64291197 + AT_rich Low_complexity Low_complexity 1 22 0 3 1258 311 232 56 35 chr5 88246064 88246207 -64291052 - Lx9 LINE L1 -20 7624 7479 3 1258 234 91 0 0 chr5 88246215 88246248 -64291011 + (TATATG)n Simple_repeat Simple_repeat 1 33 0 3 1258 528 298 0 84 chr5 88246834 88246988 -64290271 + RSINE1 SINE B4 24 164 -1 3 1258 246 105 0 0 chr5 88247027 88247065 -64290194 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1258 198 0 0 0 chr5 88247337 88247359 -64289900 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 1258 237 253 0 75 chr5 88247499 88247593 -64289666 + Lx6 LINE L1 7373 7459 -1 3 1258 414 0 0 0 chr5 88247917 88247963 -64289296 + (TTTTA)n Simple_repeat Simple_repeat 3 48 0 3 1258 684 208 165 17 chr5 88248778 88248954 -64288305 + MTC LTR MaLR 1 202 -219 3 1258 633 136 0 0 chr5 88249523 88249626 -64287633 + (TC)n Simple_repeat Simple_repeat 2 104 0 3 1258 361 305 72 96 chr5 88250435 88250602 -64286657 + RSINE1 SINE B4 3 165 0 3 1258 615 95 0 0 chr5 88250603 88250708 -64286551 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 1258 180 0 0 0 chr5 88250710 88250730 -64286529 + (TAGG)n Simple_repeat Simple_repeat 4 23 0 3 1258 3179 58 17 5 chr5 88252049 88252465 -64284794 - BGLII LTR ERVK 0 421 1 3 1258 231 211 95 40 chr5 88252515 88252589 -64284670 - B3 SINE B2 -4 212 135 3 1258 24 32 0 0 chr5 88252718 88252749 -64284510 + AT_rich Low_complexity Low_complexity 1 31 0 3 1258 209 83 0 27 chr5 88253830 88253867 -64283392 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 3 1258 2054 111 82 0 chr5 88253877 88254193 -64283066 - Lx2 LINE L1 -94 6903 6562 3 1258 1756 130 147 125 chr5 88255125 88255415 -64281844 + RMER21B LTR ERV1 1 317 -525 3 1258 234 91 0 0 chr5 88255415 88255448 -64281811 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1258 1756 130 147 125 chr5 88255448 88255580 -64281679 + RMER21B LTR ERV1 318 432 -410 3 1258 2792 72 11 5 chr5 88255622 88256000 -64281259 + L1_Mus1 LINE L1 6188 6567 0 3 1258 2529 125 55 7 chr5 88256128 88256311 -64280948 + RMER21B LTR ERV1 418 619 -223 3 1258 180 0 0 0 chr5 88256311 88256331 -64280928 + (GAGAA)n Simple_repeat Simple_repeat 2 21 0 3 1258 2529 125 55 7 chr5 88256331 88256551 -64280708 + RMER21B LTR ERV1 620 839 -3 3 1258 13406 63 3 1 chr5 88257500 88259228 -64278031 + L1Md_F2 LINE L1 3855 5585 -298 3 1258 7544 69 7 2 chr5 88259229 88260215 -64277044 + L1Md_F2 LINE L1 5587 6577 -5 3 1258 265 188 30 30 chr5 88260754 88260820 -64276439 + GA-rich Low_complexity Low_complexity 3 68 0 3 1258 389 350 102 27 chr5 88260860 88261195 -64276064 + L1MC3 LINE L1 5935 6294 -1491 3 1258 869 52 37 0 chr5 88261200 88261335 -64275924 + (TAGA)n Simple_repeat Simple_repeat 1 140 0 3 1258 550 333 154 10 chr5 88261377 88261867 -64275392 + Lx8 LINE L1 6294 6854 -619 3 1258 4093 33 4 2 chr5 88263399 88263889 -64273370 + L1Md_F3 LINE L1 6092 6582 -2 3 1258 321 135 0 0 chr5 88264272 88264324 -64272935 + (A)n Simple_repeat Simple_repeat 1 52 0 3 1258 303 369 85 39 chr5 88264342 88264624 -64272635 - L4 LINE RTE -1016 1013 719 3 1258 2879 107 75 0 chr5 88264946 88265384 -64271875 + Lx LINE L1 6172 6642 -12 3 1258 511 272 18 0 chr5 88265652 88265766 -64271493 - B1_Mur1 SINE Alu -16 133 18 4 1258 249 33 0 0 chr5 88266123 88266153 -64271106 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1258 579 181 0 0 chr5 88266184 88266300 -64270959 + (CA)n Simple_repeat Simple_repeat 1 116 0 4 1258 328 26 0 0 chr5 88266305 88266343 -64270916 + HAL1-3A_ME LINE L1 1976 2013 -845 4 1258 295 252 27 180 chr5 88267067 88267217 -64270042 - PB1 SINE Alu 0 127 1 4 1258 599 262 7 7 chr5 88267087 88267240 -64270019 - ID_B1 SINE B4 -12 212 66 4 1258 360 0 0 0 chr5 88267459 88267499 -64269760 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1258 21 71 0 0 chr5 88267575 88267617 -64269642 + AT_rich Low_complexity Low_complexity 1 42 0 4 1258 386 94 16 0 chr5 88267938 88268002 -64269257 + (TG)n Simple_repeat Simple_repeat 2 66 0 4 1258 499 269 40 118 chr5 88268344 88268572 -64268687 - B4A SINE B4 -1 291 82 4 1258 1603 134 124 0 chr5 88268646 88268937 -64268322 - IAPEY3_LTR LTR ERVK -5 327 1 4 1258 417 227 23 0 chr5 88268974 88269062 -64268197 - B4A SINE B4 -201 91 2 4 1258 1967 258 130 17 chr5 88269224 88269923 -64267336 - Lx7 LINE L1 -270 7426 6649 4 1258 240 375 51 20 chr5 88269935 88270033 -64267226 + B1F1 SINE Alu 1 101 -48 4 1258 189 0 0 0 chr5 88270257 88270278 -64266981 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1258 23 54 0 0 chr5 88270330 88270367 -64266892 + AT_rich Low_complexity Low_complexity 1 37 0 4 1258 800 205 82 58 chr5 88272887 88273041 -64264218 + B3 SINE B2 1 164 -52 4 1258 188 35 35 0 chr5 88273041 88273070 -64264189 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1258 800 205 82 58 chr5 88273070 88273122 -64264137 + B3 SINE B2 165 212 -4 4 1258 596 211 26 0 chr5 88273420 88273534 -64263725 - PB1D9 SINE Alu -2 118 2 4 1258 1252 87 5 42 chr5 88274048 88274241 -64263018 + B2_Mm2 SINE B2 1 186 -9 4 1258 327 125 0 0 chr5 88275599 88275663 -64261596 - L1Md_F2 LINE L1 -1 6581 6518 4 1258 285 330 81 95 chr5 88275986 88276197 -64261062 - MLT1D LTR MaLR -10 495 288 4 1258 264 231 39 0 chr5 88276932 88277010 -64260249 + (TA)n Simple_repeat Simple_repeat 2 82 0 4 1258 2002 108 69 41 chr5 88277397 88277715 -64259544 + ORR1A2 LTR MaLR 1 327 0 4 1258 307 264 198 19 chr5 88278309 88278471 -64258788 - B3 SINE B2 -24 192 2 4 1258 489 17 0 0 chr5 88279056 88279114 -64258145 + (CCA)n Simple_repeat Simple_repeat 1 58 0 4 1258 298 278 75 8 chr5 88280659 88280793 -64256466 - Lx8 LINE L1 -356 7117 6975 4 1258 423 155 0 0 chr5 88280805 88280889 -64256370 + (TG)n Simple_repeat Simple_repeat 2 85 0 4 1258 615 228 446 36 chr5 88280889 88281138 -64256121 - Lx8 LINE L1 -524 6949 6599 4 1258 2351 169 0 50 chr5 88281563 88282006 -64255253 + Lx2B LINE L1 6133 6553 -447 4 1258 271 315 75 71 chr5 88282570 88282782 -64254477 - ERVL-E-int LTR ERVL -1596 4071 3859 4 1258 285 293 67 72 chr5 88284044 88284239 -64253020 - L2a LINE L2 -9 3417 3224 4 1258 21 36 0 0 chr5 88284697 88284725 -64252534 + AT_rich Low_complexity Low_complexity 1 28 0 4 1258 1769 138 191 41 chr5 88285878 88286270 -64250989 - Lx2B LINE L1 -2 6998 6548 4 1258 2180 128 3 12 chr5 88286258 88286589 -64250670 + Lx2B LINE L1 6233 6560 -440 4 1258 292 311 138 8 chr5 88286594 88286717 -64250542 - B1_Mur2 SINE Alu -8 141 3 4 1258 474 312 18 30 chr5 88286769 88286934 -64250325 + RSINE1 SINE B4 3 165 0 4 1258 676 136 16 0 chr5 88287348 88287473 -64249786 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 4 1258 351 0 0 0 chr5 88287483 88287522 -64249737 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1258 256 347 83 32 chr5 88287840 88288117 -64249142 + L2 LINE L2 2460 2750 -669 4 1258 26 30 0 0 chr5 88289177 88289210 -64248049 + AT_rich Low_complexity Low_complexity 1 33 0 4 1258 282 267 33 16 chr5 88289316 88289438 -64247821 + (TAGA)n Simple_repeat Simple_repeat 2 125 0 4 1258 450 75 0 0 chr5 88289442 88289509 -64247750 + (ATTG)n Simple_repeat Simple_repeat 3 69 0 4 1258 926 171 90 6 chr5 88289509 88289686 -64247573 - RLTR19 LTR ERVK -4 495 304 4 1258 23 33 0 0 chr5 88290737 88290767 -64246492 + AT_rich Low_complexity Low_complexity 1 30 0 4 1258 630 199 249 12 chr5 88290897 88291070 -64246189 - B3 SINE B2 0 216 3 4 1258 23 0 0 0 chr5 88291298 88291321 -64245938 + AT_rich Low_complexity Low_complexity 1 23 0 4 1258 211 102 40 20 chr5 88291799 88291849 -64245410 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1258 245 288 37 12 chr5 88291873 88291954 -64245305 - PB1D10 SINE Alu -2 115 33 4 1258 461 43 43 0 chr5 88291970 88292039 -64245220 - L1Md_F2 LINE L1 -1 6581 6510 4 1258 234 0 0 0 chr5 88292651 88292677 -64244582 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4 1258 748 90 22 8 chr5 88292677 88292811 -64244448 - L1_Mus3 LINE L1 -2 6636 6501 4 1258 371 158 28 0 chr5 88292959 88293069 -64244190 - B2_Mm2 SINE B2 0 195 47 4 1258 1173 113 11 11 chr5 88293120 88293299 -64243960 - B2_Mm1t SINE B2 -14 179 1 4 1258 212 266 90 25 chr5 88293378 88293481 -64243778 - MIRc SINE MIR -96 166 65 4 1258 555 16 0 0 chr5 88293860 88293924 -64243335 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1258 1588 206 11 23 chr5 88294691 88295044 -64242215 + Lx2B LINE L1 6651 6999 -1 4 1258 22 0 0 0 chr5 88296163 88296185 -64241074 + AT_rich Low_complexity Low_complexity 1 22 0 4 1258 207 0 0 0 chr5 88296545 88296568 -64240691 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1258 1726 81 17 13 chr5 88300038 88300275 -64236984 - L1_Mus1 LINE L1 0 6567 6330 4 1258 2033 85 0 0 chr5 88300283 88300553 -64236706 + L1_Mus1 LINE L1 6061 6330 -237 4 1258 209 33 33 0 chr5 88300573 88300603 -64236656 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 4 1258 218 279 0 0 chr5 88300876 88300944 -64236315 + T-rich Low_complexity Low_complexity 1 68 0 4 1258 1985 98 0 14 chr5 88301149 88301440 -64235819 + L1Md_F2 LINE L1 6282 6568 -14 4 1258 470 91 13 0 chr5 88301668 88301745 -64235514 + (GA)n Simple_repeat Simple_repeat 2 79 0 4 1258 234 208 19 0 chr5 88301776 88301829 -64235430 + GA-rich Low_complexity Low_complexity 1 54 0 4 1258 504 32 0 0 chr5 88302198 88302260 -64234999 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1258 207 0 0 0 chr5 88302658 88302681 -64234578 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1258 297 284 30 0 chr5 88302776 88302843 -64234416 - MLT1I LTR MaLR -238 173 105 4 1258 241 342 30 46 chr5 88303008 88303221 -64234038 + L2c LINE L2 2911 3121 -305 4 1258 371 323 39 8 chr5 88303261 88303389 -64233870 + B1F SINE Alu 10 141 -8 4 1258 567 0 0 0 chr5 88303397 88303460 -64233799 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 4 1258 5588 184 51 14 chr5 88303566 88304744 -64232515 + Lx2B LINE L1 5761 6981 -19 4 1258 217 293 87 48 chr5 88305303 88305407 -64231852 - MIR SINE MIR -113 149 42 4 1258 183 80 0 0 chr5 88308712 88308737 -64228522 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1258 30 27 0 0 chr5 88308873 88308910 -64228349 + AT_rich Low_complexity Low_complexity 1 37 0 4 1258 414 0 0 0 chr5 88309595 88309641 -64227618 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 4 1258 773 292 0 36 chr5 88309644 88309836 -64227423 - B3 SINE B2 -29 187 3 4 1258 27 0 0 0 chr5 88309860 88309887 -64227372 + AT_rich Low_complexity Low_complexity 1 27 0 4 1258 568 313 6 79 chr5 88310760 88310937 -64226322 - B3A SINE B2 -1 197 34 4 1258 398 36 0 18 chr5 88310939 88310996 -64226263 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 4 1258 202 113 62 31 chr5 88311012 88311076 -64226183 + T-rich Low_complexity Low_complexity 3 68 0 4 1258 637 256 224 30 chr5 88311078 88311384 -64225875 - MTC LTR MaLR -52 369 12 4 1258 213 47 22 44 chr5 88311385 88311430 -64225829 + (CAAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1258 1011 112 6 17 chr5 88311432 88311613 -64225646 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 4 1258 4119 61 2 0 chr5 88311617 88312160 -64225099 - MusHAL1 LINE L1 -729 1983 1440 4 1258 387 0 0 0 chr5 88312471 88312514 -64224745 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1258 1165 244 50 0 chr5 88313275 88313533 -64223726 + Lx6 LINE L1 7157 7427 -33 4 1258 1298 60 0 0 chr5 88315013 88315181 -64222078 - L1Md_T LINE L1 0 6582 6415 4 1258 513 216 8 39 chr5 88315741 88315871 -64221388 + Lx4B LINE L1 6916 7041 -17 4 1258 1265 73 0 11 chr5 88316123 88316302 -64220957 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 4 1258 22 35 0 0 chr5 88317419 88317448 -64219811 + AT_rich Low_complexity Low_complexity 1 29 0 4 1258 23 33 0 0 chr5 88317568 88317598 -64219661 + AT_rich Low_complexity Low_complexity 1 30 0 4 1258 193 384 9 18 chr5 88317800 88317914 -64219345 - MIRc SINE MIR -59 209 97 4 1258 990 70 0 0 chr5 88319339 88319467 -64217792 + Lx3_Mus LINE L1 6399 6526 -483 4 1258 221 159 0 0 chr5 88319468 88319512 -64217747 + A-rich Low_complexity Low_complexity 1 44 0 4 1258 1227 34 0 0 chr5 88319607 88319755 -64217504 + (TC)n Simple_repeat Simple_repeat 1 148 0 4 1258 1442 156 25 142 chr5 88319768 88320026 -64217233 - Lx4A LINE L1 -2 7056 6827 4 1258 1192 48 0 7 chr5 88320026 88320174 -64217085 - B1_Mm SINE Alu 0 147 1 4 1258 1442 156 25 142 chr5 88320174 88320282 -64216977 - Lx4A LINE L1 -232 6826 6733 4 1258 636 166 0 0 chr5 88320695 88320858 -64216401 + GA-rich Low_complexity Low_complexity 1 163 0 4 1258 320 284 9 132 chr5 88320897 88321124 -64216135 + Lx8 LINE L1 7265 7463 -10 4 1258 31 0 0 0 chr5 88321771 88321802 -64215457 + AT_rich Low_complexity Low_complexity 1 31 0 4 1258 462 275 34 34 chr5 88323359 88323506 -64213753 - B1_Mur2 SINE Alu 0 149 3 4 1258 498 33 0 0 chr5 88324863 88324923 -64212336 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1258 514 214 8 0 chr5 88325483 88325609 -64211650 + Lx9 LINE L1 7511 7637 -7 5 1258 482 163 0 10 chr5 88325734 88325833 -64211426 + CT-rich Low_complexity Low_complexity 1 98 0 5 1258 1597 275 104 45 chr5 88325885 88326574 -64210685 - Lx9 LINE L1 -10 7634 6905 5 1258 341 168 0 50 chr5 88326574 88326613 -64210646 + T-rich Low_complexity Low_complexity 57 95 0 5 1258 983 113 43 0 chr5 88326613 88326754 -64210505 - B1_Mus2 SINE Alu 0 147 1 5 1258 341 168 0 50 chr5 88326754 88326814 -64210445 + T-rich Low_complexity Low_complexity 2 56 0 5 1258 930 50 0 0 chr5 88326814 88326935 -64210324 - B1_Mm SINE Alu 0 147 27 5 1258 1386 276 179 25 chr5 88326953 88327984 -64209275 - Lx9 LINE L1 -739 6905 5529 5 1258 277 24 0 45 chr5 88327984 88328028 -64209231 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 5 1258 1373 200 181 29 chr5 88328028 88328168 -64209091 - Lx9 LINE L1 -319 5528 5384 5 1258 459 0 0 0 chr5 88328199 88328250 -64209009 + (TA)n Simple_repeat Simple_repeat 2 52 0 5 1258 1732 89 0 56 chr5 88328571 88328855 -64208404 - Lx3_Mus LINE L1 -5 7004 6737 5 1258 571 29 0 0 chr5 88328855 88328923 -64208336 + Lx3_Mus LINE L1 6609 6676 -333 5 1258 357 291 48 28 chr5 88328936 88329081 -64208178 - B1F SINE Alu -1 148 1 5 1258 403 204 63 38 chr5 88329593 88329751 -64207508 - Lx9 LINE L1 -5 7639 7478 5 1258 27 49 0 0 chr5 88329774 88329815 -64207444 + AT_rich Low_complexity Low_complexity 1 41 0 5 1258 293 213 24 18 chr5 88329818 88329985 -64207274 + (TA)n Simple_repeat Simple_repeat 1 168 0 5 1258 277 229 0 56 chr5 88329986 88330111 -64207148 - Lx9 LINE L1 -128 7516 7399 5 1258 948 255 56 19 chr5 88330165 88330489 -64206770 - Lx7 LINE L1 -1 7695 7360 5 1258 23 54 0 0 chr5 88330501 88330538 -64206721 + AT_rich Low_complexity Low_complexity 1 37 0 5 1258 22 0 0 0 chr5 88330568 88330590 -64206669 + AT_rich Low_complexity Low_complexity 1 22 0 5 1258 190 354 89 0 chr5 88330732 88330811 -64206448 + MIRm SINE MIR 160 245 -31 5 1258 37 62 0 0 chr5 88330923 88330988 -64206271 + AT_rich Low_complexity Low_complexity 1 65 0 5 1258 5118 183 31 8 chr5 88331398 88332418 -64204841 + Lx5 LINE L1 5939 7047 -3 5 1258 1056 101 0 20 chr5 88332554 88332705 -64204554 + B1_Mus1 SINE Alu 1 148 0 5 1258 737 249 28 17 chr5 88332829 88333009 -64204250 - B3A SINE B2 -16 182 1 5 1258 250 316 0 12 chr5 88333365 88333445 -64203814 + B3 SINE B2 138 216 0 5 1258 384 22 0 0 chr5 88334693 88334738 -64202521 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1258 524 312 62 0 chr5 88334756 88334932 -64202327 + Lx8 LINE L1 6273 6459 -1014 5 1258 1545 131 93 14 chr5 88335024 88335302 -64201957 - L1_Mus4 LINE L1 -5 6631 6332 5 1258 1750 310 72 13 chr5 88335303 88335980 -64201279 + Lx8 LINE L1 6627 7343 -130 5 1258 512 296 44 35 chr5 88335967 88336170 -64201089 - Lx7 LINE L1 -373 7323 7119 5 1258 462 65 0 0 chr5 88336676 88336738 -64200521 + (GGA)n Simple_repeat Simple_repeat 3 64 0 5 1258 240 244 0 25 chr5 88336767 88336847 -64200412 + Lx7 LINE L1 7604 7681 -15 5 1258 22 35 0 0 chr5 88336891 88336920 -64200339 + AT_rich Low_complexity Low_complexity 1 29 0 5 1258 294 206 0 0 chr5 88337067 88337135 -64200124 + (CA)n Simple_repeat Simple_repeat 2 69 0 5 1258 644 234 0 23 chr5 88338200 88338331 -64198928 + B1_Mur2 SINE Alu 9 136 -13 5 1258 648 189 16 3 chr5 88338513 88338666 -64198593 - L1_Rod LINE L1 -1768 4375 4187 5 1258 1556 248 48 20 chr5 88339984 88340379 -64196880 - MTD LTR MaLR -13 406 1 5 1258 591 27 0 0 chr5 88340702 88340775 -64196484 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1259 597 167 7 28 chr5 88342767 88342909 -64194350 + (CATA)n Simple_repeat Simple_repeat 4 142 0 5 1259 1432 311 114 8 chr5 88343314 88343955 -64193304 - Lx8 LINE L1 -12 7461 6753 5 1259 1507 201 89 20 chr5 88344302 88344652 -64192607 - ORR1D1 LTR MaLR 0 374 1 5 1259 368 20 20 0 chr5 88345385 88345434 -64191825 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1259 710 81 21 21 chr5 88345715 88345853 -64191406 - L1Md_F2 LINE L1 -610 6028 5891 5 1259 3274 47 26 12 chr5 88345854 88346281 -64190978 + L1Md_F2 LINE L1 6127 6559 -23 5 1259 288 77 0 0 chr5 88346281 88346320 -64190939 + (TAA)n Simple_repeat Simple_repeat 1 39 0 5 1259 423 141 29 15 chr5 88347427 88347564 -64189695 + (TCTCTG)n Simple_repeat Simple_repeat 4 142 0 5 1259 213 208 0 40 chr5 88348138 88348213 -64189046 + (TTATA)n Simple_repeat Simple_repeat 2 73 0 5 1259 25 0 0 0 chr5 88348642 88348667 -64188592 + AT_rich Low_complexity Low_complexity 1 25 0 5 1259 694 274 141 38 chr5 88348894 88349319 -64187940 - Lx8 LINE L1 -47 7426 6958 5 1259 597 214 0 0 chr5 88349723 88349882 -64187377 + GA-rich Low_complexity Low_complexity 2 160 0 5 1259 200 299 0 0 chr5 88349884 88349898 -64187361 + polypurine Low_complexity Low_complexity 4 17 0 5 1259 6454 29 0 0 chr5 88349898 88350652 -64186607 + L1Md_A LINE L1 5828 6581 -1 5 1259 200 299 0 0 chr5 88350652 88350704 -64186555 + GA-rich Low_complexity Low_complexity 18 69 0 5 1259 1025 183 59 32 chr5 88351851 88352071 -64185188 - URR1A DNA MER1_type 0 226 1 5 1259 182 351 0 51 chr5 88353042 88353120 -64184139 + L2b LINE L2 3252 3325 -50 5 1259 294 164 0 0 chr5 88353281 88353336 -64183923 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1259 213 132 0 0 chr5 88355001 88355039 -64182220 + (CATAT)n Simple_repeat Simple_repeat 1 38 0 5 1259 33 25 0 0 chr5 88355261 88355301 -64181958 + AT_rich Low_complexity Low_complexity 1 40 0 5 1259 26 0 0 0 chr5 88356535 88356561 -64180698 + AT_rich Low_complexity Low_complexity 1 26 0 5 1259 24 0 0 0 chr5 88356571 88356595 -64180664 + AT_rich Low_complexity Low_complexity 1 24 0 5 1259 1114 134 59 0 chr5 88356907 88357094 -64180165 + Lx3C LINE L1 6779 6976 0 5 1259 23 54 0 0 chr5 88357223 88357260 -64179999 + AT_rich Low_complexity Low_complexity 1 37 0 5 1259 1126 68 14 0 chr5 88358094 88358240 -64179019 + B1_Mus1 SINE Alu 1 148 0 5 1259 221 125 42 0 chr5 88358242 88358290 -64178969 + A-rich Low_complexity Low_complexity 4 53 0 5 1259 420 288 68 8 chr5 88359625 88359758 -64177501 + B1_Mur2 SINE Alu 1 141 -8 5 1259 256 306 16 0 chr5 88359780 88359842 -64177417 + ID4_ SINE ID 2 64 -19 5 1259 869 98 15 0 chr5 88359842 88359975 -64177284 + (GAAA)n Simple_repeat Simple_repeat 4 138 0 5 1259 1465 69 0 5 chr5 88359975 88360165 -64177094 + B2_Mm2 SINE B2 2 190 -5 5 1259 459 52 0 0 chr5 88360182 88360240 -64177019 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1259 324 0 0 0 chr5 88361579 88361615 -64175644 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1259 406 289 141 0 chr5 88361615 88361736 -64175523 - RSINE1 SINE B4 -12 153 16 5 1259 1872 133 13 0 chr5 88362189 88362498 -64174761 + L1_Mur1 LINE L1 4355 4667 -1219 5 1259 8277 144 12 13 chr5 88362492 88364280 -64172979 - Lx2 LINE L1 -1 6996 5215 5 1259 2017 142 0 0 chr5 88364274 88364585 -64172674 + Lx2 LINE L1 4940 5250 -636 5 1259 3906 101 5 62 chr5 88364567 88364680 -64172579 + L1_Mur1 LINE L1 4642 4739 -1147 5 1259 210 37 0 0 chr5 88364680 88364707 -64172552 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1259 3906 101 5 62 chr5 88364707 88365260 -64171999 + L1_Mur1 LINE L1 4740 5270 -616 5 1259 235 250 0 0 chr5 88365357 88365405 -64171854 + B4 SINE B4 20 67 -225 5 1259 5332 170 56 12 chr5 88365433 88366709 -64170550 - Lx5 LINE L1 -21 7037 5637 5 1259 1741 168 14 0 chr5 88366710 88367001 -64170258 + Lx5 LINE L1 5345 5639 -238 5 1259 243 302 58 77 chr5 88367001 88367105 -64170154 + MT2B LTR ERVL 138 239 -362 5 1259 662 289 64 0 chr5 88367035 88367208 -64170051 + B4 SINE B4 96 279 -13 5 1259 1735 106 8 0 chr5 88367286 88367542 -64169717 - L1_Mus3 LINE L1 -7 6631 6374 5 1259 26 50 0 0 chr5 88367693 88367733 -64169526 + AT_rich Low_complexity Low_complexity 1 40 0 5 1259 471 78 0 0 chr5 88367783 88367847 -64169412 + (TA)n Simple_repeat Simple_repeat 2 65 0 5 1259 822 126 0 0 chr5 88367847 88367974 -64169285 - RMER15 LTR ERVL -162 413 287 5 1259 544 222 17 0 chr5 88367985 88368102 -64169157 - RMER15 LTR ERVL -456 119 1 5 1259 1081 75 17 11 chr5 88368121 88368297 -64168962 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 5 1259 911 103 0 0 chr5 88368297 88368433 -64168826 - B1_Mus1 SINE Alu -12 136 1 5 1259 180 77 0 0 chr5 88368482 88368508 -64168751 + (CATG)n Simple_repeat Simple_repeat 1 26 0 5 1259 282 281 0 33 chr5 88370745 88370837 -64166422 + RMER12 LTR ERVK 749 837 -485 5 1259 693 286 5 45 chr5 88370943 88371144 -64166115 + B3A SINE B2 6 198 0 5 1259 242 371 104 37 chr5 88371747 88372256 -64165003 - L2 LINE L2 -661 2758 2216 5 1259 23 54 0 0 chr5 88372286 88372323 -64164936 + AT_rich Low_complexity Low_complexity 1 37 0 5 1259 209 111 0 27 chr5 88374081 88374118 -64163141 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1259 484 285 16 31 chr5 88374119 88374246 -64163013 - B1_Mur2 SINE Alu -1 148 24 5 1259 255 273 0 96 chr5 88374186 88374259 -64163000 - MT2B LTR ERVL -361 240 175 5 1259 1174 183 0 0 chr5 88374819 88375010 -64162249 + URR1B DNA MER1_type 35 225 0 5 1259 505 298 45 27 chr5 88375010 88375058 -64162201 - CYRA11_Mm Unknown Y-chromosome -447 170 119 5 1259 623 158 8 0 chr5 88375697 88375824 -64161435 + (TA)n Simple_repeat Simple_repeat 2 129 0 5 1259 288 0 0 0 chr5 88375824 88375856 -64161403 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1259 323 311 50 84 chr5 88376520 88376699 -64160560 + MTE-int LTR MaLR 71 243 -1337 5 1259 11887 50 0 0 chr5 88376700 88378174 -64159085 + L1Md_F2 LINE L1 4113 5586 -297 5 1259 7973 46 4 0 chr5 88378174 88379186 -64158073 + L1Md_F2 LINE L1 5587 6582 0 5 1259 614 289 113 76 chr5 88379190 88379624 -64157635 + MTE-int LTR MaLR 237 686 -894 5 1259 3986 169 63 12 chr5 88379624 88380836 -64156423 + Lx4B LINE L1 5139 6422 -636 5 1259 626 218 151 8 chr5 88380830 88381072 -64156187 + Lx4B LINE L1 6679 7036 -22 5 1259 305 237 54 85 chr5 88381073 88381202 -64156057 + MTE-int LTR MaLR 560 684 -896 5 1259 1138 216 80 17 chr5 88381346 88381634 -64155625 + Lx9 LINE L1 6957 7262 -382 5 1259 891 200 106 35 chr5 88381648 88381902 -64155357 + Lx9 LINE L1 7365 7636 -8 5 1259 1215 48 0 0 chr5 88382416 88382562 -64154697 + B1_Mm SINE Alu 2 147 0 5 1259 24 0 0 0 chr5 88384369 88384393 -64152866 + AT_rich Low_complexity Low_complexity 1 24 0 5 1259 204 179 0 0 chr5 88385870 88385909 -64151350 + (CATA)n Simple_repeat Simple_repeat 4 42 0 5 1259 300 53 0 0 chr5 88386207 88386245 -64151014 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1259 258 32 0 0 chr5 88386522 88386553 -64150706 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1259 213 263 70 0 chr5 88386909 88386966 -64150293 + PB1D7 SINE Alu 52 112 -8 6 1259 258 32 0 0 chr5 88386972 88387003 -64150256 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6 1259 351 0 0 0 chr5 88387733 88387772 -64149487 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 6 1259 580 240 68 34 chr5 88387774 88388000 -64149259 - Lx7 LINE L1 0 7696 7426 6 1259 378 0 0 0 chr5 88388000 88388042 -64149217 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1259 3934 235 100 17 chr5 88388042 88389027 -64148232 - Lx7 LINE L1 -271 7425 6363 6 1259 6313 158 27 37 chr5 88389053 88390284 -64146975 - L1_Mur3 LINE L1 -6 5874 4656 6 1259 2127 237 49 8 chr5 88390301 88390790 -64146469 - L1_Mur3 LINE L1 -7165 563 55 6 1259 283 361 21 63 chr5 88390974 88391116 -64146143 - L1M3b LINE L1 -5685 596 461 6 1259 640 323 101 31 chr5 88391510 88391865 -64145394 - L1M3b LINE L1 -5844 437 58 6 1259 350 240 0 82 chr5 88392631 88392826 -64144433 + GA-rich Low_complexity Low_complexity 2 180 0 6 1259 290 331 0 88 chr5 88394740 88394877 -64142382 + ID4 SINE ID 1 125 -27 6 1259 3089 39 7 42 chr5 88395496 88395900 -64141359 - RLTR10 LTR ERVK 0 390 1 6 1259 519 84 32 0 chr5 88396142 88396237 -64141022 + (TA)n Simple_repeat Simple_repeat 1 98 0 6 1259 378 85 0 0 chr5 88396260 88396319 -64140940 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 6 1259 24 77 0 0 chr5 88397633 88397685 -64139574 + AT_rich Low_complexity Low_complexity 1 52 0 6 1259 970 86 7 0 chr5 88398925 88399064 -64138195 - B1_Mus1 SINE Alu -1 147 8 6 1259 1125 84 0 0 chr5 88399194 88399336 -64137923 + B1_Mus1 SINE Alu 2 143 -5 6 1259 203 221 28 28 chr5 88399341 88399448 -64137811 + T-rich Low_complexity Low_complexity 1 107 0 6 1259 616 182 39 31 chr5 88399448 88399578 -64137681 - B1_Mur4 SINE Alu -18 132 2 6 1259 348 298 83 8 chr5 88399919 88400051 -64137208 + B1F SINE Alu 1 142 -7 6 1259 287 290 16 0 chr5 88400067 88400129 -64137130 + ID4 SINE ID 16 78 -5 6 1259 826 120 16 0 chr5 88405049 88405174 -64132085 - B1_Mus1 SINE Alu -20 128 2 6 1259 198 0 0 0 chr5 88405557 88405579 -64131680 + (ATTG)n Simple_repeat Simple_repeat 1 22 0 6 1259 323 297 30 0 chr5 88407060 88407161 -64130098 + PB1D10 SINE Alu 5 108 -9 6 1259 225 94 0 0 chr5 88407177 88407209 -64130050 + (GAA)n Simple_repeat Simple_repeat 2 33 0 6 1259 1359 181 138 6 chr5 88411173 88411506 -64125753 + Lx9 LINE L1 7204 7580 -64 6 1259 3011 213 47 85 chr5 88411592 88412360 -64124899 + RMER1A Other Other 89 827 -203 6 1259 7541 161 36 8 chr5 88412416 88414436 -64122823 - Lx5 LINE L1 -3 7047 4957 6 1259 4672 137 53 5 chr5 88414437 88415301 -64121958 - Lx5 LINE L1 -1487 4390 3485 6 1259 1826 153 62 3 chr5 88415298 88415638 -64121621 - Lx5 LINE L1 -3320 2557 2198 6 1259 1190 181 202 2 chr5 88415621 88416120 -64121139 - Lx5 LINE L1 -4327 1550 889 6 1259 297 0 0 0 chr5 88416657 88416690 -64120569 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1259 270 0 0 0 chr5 88416972 88417002 -64120257 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1259 402 115 0 0 chr5 88417005 88417066 -64120193 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 1259 1043 95 0 7 chr5 88417296 88417444 -64119815 + B1_Mus2 SINE Alu 1 147 0 6 1259 207 0 0 0 chr5 88419457 88419480 -64117779 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1259 26 50 0 0 chr5 88420902 88420942 -64116317 + AT_rich Low_complexity Low_complexity 1 40 0 6 1259 27 0 0 0 chr5 88421785 88421812 -64115447 + AT_rich Low_complexity Low_complexity 1 27 0 6 1259 25 90 0 0 chr5 88423776 88423843 -64113416 + AT_rich Low_complexity Low_complexity 1 67 0 6 1259 262 381 34 17 chr5 88423856 88424032 -64113227 - MER2B DNA MER2_type -12 324 146 6 1259 3222 250 64 39 chr5 88424059 88424263 -64112996 - Lx9 LINE L1 -75 7569 7347 6 1259 812 117 6 78 chr5 88424263 88424430 -64112829 - L1Md_F2 LINE L1 0 6582 6428 6 1259 3222 250 64 39 chr5 88424430 88425183 -64112076 - Lx9 LINE L1 -298 7346 6588 6 1259 1779 194 40 10 chr5 88426011 88426683 -64110576 - L1_Rod LINE L1 -4189 1658 966 6 1259 1247 256 114 42 chr5 88426736 88426765 -64110494 - RLTR20B3 LTR ERVK -67 510 482 6 1259 486 0 0 0 chr5 88426765 88426819 -64110440 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1259 1247 256 114 42 chr5 88426819 88427246 -64110013 - RLTR20B3 LTR ERVK -96 481 22 6 1259 581 216 0 0 chr5 88427252 88427363 -64109896 - L1_Rod LINE L1 -6644 964 854 6 1259 523 321 28 44 chr5 88427529 88427848 -64109411 + Lx9 LINE L1 7248 7561 -83 6 1259 4212 283 56 24 chr5 88429698 88431126 -64106133 + Lx7 LINE L1 5993 7466 -230 6 1259 6830 65 19 1 chr5 88431916 88432806 -64104453 - L1_Mus1 LINE L1 0 6567 5662 6 1259 26 30 0 0 chr5 88436526 88436559 -64100700 + AT_rich Low_complexity Low_complexity 1 33 0 6 1259 667 272 96 7 chr5 88438689 88438959 -64098300 + Lx7 LINE L1 7114 7407 -289 6 1259 333 0 0 0 chr5 88439188 88439225 -64098034 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1259 574 150 0 17 chr5 88439983 88440098 -64097161 - Lx3A LINE L1 0 6981 6869 6 1259 22 0 0 0 chr5 88440131 88440153 -64097106 + AT_rich Low_complexity Low_complexity 1 22 0 6 1259 3351 204 17 1 chr5 88442604 88443253 -64094006 - Lx2A1 LINE L1 -2 7006 6348 6 1259 577 325 5 0 chr5 88443287 88443490 -64093769 - L1MA4A LINE L1 -425 5878 5675 6 1259 186 200 149 30 chr5 88444196 88444263 -64092996 - MIRb SINE MIR -1 267 193 6 1259 2919 96 9 19 chr5 88444277 88444702 -64092557 - Lx3_Mus LINE L1 -1 7008 6588 6 1259 23766 164 19 11 chr5 88444769 88450230 -64087029 - Lx LINE L1 -1 6653 1149 6 1259 2779 131 7 5 chr5 88450231 88450661 -64086598 - L1_Mur1 LINE L1 -18 5868 5438 6 1259 1548 56 0 40 chr5 88452870 88453071 -64084188 - L1_Mus2 LINE L1 -1 6565 6371 6 1259 3268 61 0 0 chr5 88453071 88453467 -64083792 + MTA_Mm LTR MaLR 1 396 0 6 1259 8272 59 16 3 chr5 88453467 88454551 -64082708 + MTA_Mm-int LTR MaLR 1 1098 0 6 1259 3365 48 0 0 chr5 88454551 88454947 -64082312 + MTA_Mm LTR MaLR 1 396 0 6 1259 1548 56 0 40 chr5 88454947 88454965 -64082294 - L1_Mus2 LINE L1 -196 6370 6355 6 1259 350 82 0 0 chr5 88454965 88455014 -64082245 + L1_Mus2 LINE L1 6270 6318 -248 6 1259 281 269 112 14 chr5 88455931 88456074 -64081185 + MER2 DNA MER2_type 22 178 -167 6 1259 32 57 0 0 chr5 88457254 88457307 -64079952 + AT_rich Low_complexity Low_complexity 1 53 0 6 1259 262 214 113 14 chr5 88457424 88457495 -64079764 + RMER19B LTR ERVK 814 891 -11 6 1259 612 27 0 0 chr5 88457501 88457575 -64079684 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 6 1259 7547 208 51 19 chr5 88457586 88458818 -64078441 + Lx5 LINE L1 2056 3968 -1909 6 1259 1663 83 0 90 chr5 88458818 88459097 -64078162 + L1Md_F2 LINE L1 6329 6582 0 6 1259 7547 226 59 32 chr5 88459097 88459936 -64077323 + Lx5 LINE L1 3969 4833 -1044 6 1259 1941 143 19 9 chr5 88459936 88460260 -64076999 + ORR1A2 LTR MaLR 1 327 0 6 1259 7547 224 39 24 chr5 88460260 88461308 -64075951 + Lx5 LINE L1 4834 5954 -1096 6 1259 21 0 0 0 chr5 88463422 88463443 -64073816 + AT_rich Low_complexity Low_complexity 1 21 0 6 1259 10371 39 3 2 chr5 88463698 88464959 -64072300 + L1Md_F2 LINE L1 4323 5585 -298 6 1259 7966 49 1 11 chr5 88464960 88465965 -64071294 + L1Md_F2 LINE L1 5587 6581 -1 6 1259 28 48 0 0 chr5 88465965 88466007 -64071252 + AT_rich Low_complexity Low_complexity 1 42 0 6 1259 414 227 0 35 chr5 88466369 88466490 -64070769 - Lx2B LINE L1 -563 6434 6322 6 1259 458 311 7 38 chr5 88466479 88466688 -64070571 - L1MA4 LINE L1 -407 5893 5691 6 1259 198 103 0 0 chr5 88467303 88467332 -64069927 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1259 23 0 0 0 chr5 88467473 88467496 -64069763 + AT_rich Low_complexity Low_complexity 1 23 0 6 1259 189 0 0 0 chr5 88468107 88468128 -64069131 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 6 1259 257 284 54 0 chr5 88470525 88470599 -64066660 + RMER19B LTR ERVK 814 891 -11 6 1259 540 0 0 0 chr5 88470603 88470663 -64066596 + (TC)n Simple_repeat Simple_repeat 1 60 0 6 1259 2982 202 125 6 chr5 88470670 88471476 -64065783 + L1_Mur3 LINE L1 2061 2962 -2915 6 1259 3804 221 51 20 chr5 88471474 88472536 -64064723 + L1_Mur3 LINE L1 3584 4678 -1202 6 157 5111 133 13 14 chr5 88472536 88474009 -64063250 + L1VL4 LINE L1 197 1662 -1897 6 1260 34297 84 8 19 chr5 88474012 88479429 -64057830 + L1Md_F2 LINE L1 238 5586 -297 6 1260 7758 54 3 2 chr5 88479430 88480411 -64056848 + L1Md_F2 LINE L1 5588 6569 -13 6 1260 21 0 0 0 chr5 88480548 88480569 -64056690 + AT_rich Low_complexity Low_complexity 1 21 0 6 1260 1205 194 4 25 chr5 88480930 88481168 -64056091 - ORR1B1 LTR MaLR 0 394 162 6 1260 232 281 52 9 chr5 88482591 88482706 -64054553 + Lx8 LINE L1 5771 5890 -1583 6 1260 1069 246 25 0 chr5 88483385 88483629 -64053630 - Lx9 LINE L1 -807 6837 6588 6 1260 198 0 0 0 chr5 88484161 88484183 -64053076 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1260 1354 203 87 19 chr5 88484188 88484614 -64052645 - L1_Rod LINE L1 -4414 1433 996 6 1260 38227 38 0 0 chr5 88484620 88490094 -64047165 - L1Md_T LINE L1 -2 6580 1108 6 1260 5362 104 118 0 chr5 88490062 88490892 -64046367 - L1Md_T LINE L1 -5411 1205 278 6 1260 668 274 0 0 chr5 88490908 88491065 -64046194 - L1_Rod LINE L1 -6598 1010 854 6 1260 308 144 0 0 chr5 88493443 88493499 -64043760 - B1_Mur4 SINE Alu -1 149 93 6 1260 1353 269 126 15 chr5 88493681 88494199 -64043060 + Lx7 LINE L1 6763 7337 -359 6 1260 203 61 0 29 chr5 88494200 88494234 -64043025 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1260 341 113 19 0 chr5 88494299 88494352 -64042907 - HAL1-3A_ME LINE L1 -829 2029 1976 6 1260 573 186 0 0 chr5 88494355 88494484 -64042775 + (TG)n Simple_repeat Simple_repeat 2 130 0 6 1260 482 242 128 92 chr5 88494582 88494800 -64042459 + URR1A DNA MER1_type 1 226 0 6 1260 257 94 0 36 chr5 88495132 88495187 -64042072 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 6 1260 270 116 0 0 chr5 88495431 88495474 -64041785 + (TTAA)n Simple_repeat Simple_repeat 3 45 0 6 1260 8344 142 10 3 chr5 88495486 88496876 -64040383 - Lx3A LINE L1 -50 6931 5535 6 1260 1545 140 4 7 chr5 88496875 88497149 -64040110 - Lx3A LINE L1 -1841 4045 3773 6 1260 4766 124 6 70 chr5 88498466 88499326 -64037933 - RLTR13D1 LTR ERVK 0 806 2 6 1260 893 98 181 13 chr5 88499758 88499890 -64037369 + B2_Mm1t SINE B2 1 160 -33 6 1260 243 0 0 0 chr5 88499890 88499917 -64037342 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 6 1260 893 98 181 13 chr5 88499917 88499939 -64037320 + B2_Mm1t SINE B2 161 181 -12 6 1260 355 256 79 55 chr5 88500391 88500556 -64036703 + Lx6 LINE L1 5868 6036 -1424 1 1260 1866 26 4 0 chr5 88500680 88500909 -64036350 + MT2C_Mm LTR ERVL 17 246 -229 2 1260 367 267 49 10 chr5 88500911 88501013 -64036246 + Lx5 LINE L1 6269 6374 -676 3 1260 539 334 89 44 chr5 88501004 88501342 -64035917 + Lx5 LINE L1 6479 6831 -219 3 1260 6684 135 2 10 chr5 88501357 88502478 -64034781 - L1_Mm LINE L1 -3176 2707 1596 4 1260 23 33 0 0 chr5 88503128 88503158 -64034101 + AT_rich Low_complexity Low_complexity 1 30 0 5 1260 931 173 22 0 chr5 88503385 88503564 -64033695 + Lx3_Mus LINE L1 6827 7009 0 6 1260 461 194 0 15 chr5 88503965 88504101 -64033158 + CT-rich Low_complexity Low_complexity 3 136 0 7 1260 249 384 60 33 chr5 88504762 88505064 -64032195 + MER2B DNA MER2_type 22 331 -5 8 1260 465 228 10 0 chr5 88505751 88505852 -64031407 + RLTR16 LTR ERVK 299 400 -105 9 1260 1116 254 57 45 chr5 88505860 88506264 -64030995 - Lx9 LINE L1 -458 7186 6778 1 1260 2161 191 0 3 chr5 88506249 88506632 -64030627 + L1VL4 LINE L1 256 637 -5665 1 1260 3110 183 68 7 chr5 88506621 88507324 -64029935 + L1_Mur2 LINE L1 3731 4476 -1401 1 1260 5712 156 32 9 chr5 88509273 88510354 -64026905 - Lx LINE L1 0 6654 5540 1 1260 2751 281 69 15 chr5 88510405 88511406 -64025853 - Lx9 LINE L1 -1 7643 6589 1 1260 555 43 0 0 chr5 88511956 88512026 -64025233 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 1 1260 1996 282 92 9 chr5 88513167 88513907 -64023352 + Lx7 LINE L1 6567 7367 -329 1 1260 539 212 122 5 chr5 88514111 88514283 -64022976 + URR1B DNA MER1_type 45 224 -1 1 1260 2303 154 32 22 chr5 88514798 88515210 -64022049 - Lx LINE L1 -7 6647 6232 1 1260 194 81 0 26 chr5 88516227 88516265 -64020994 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 1 1260 756 196 7 0 chr5 88516265 88516413 -64020846 - Lx3_Mus LINE L1 -680 6329 6181 2 1260 2822 152 14 21 chr5 88516412 88516985 -64020274 - MusHAL1 LINE L1 -1737 975 407 2 1260 4180 153 96 10 chr5 88518033 88518587 -64018672 - Lx3_Mus LINE L1 -11 6998 6377 2 1260 2188 114 3 73 chr5 88518587 88518957 -64018302 - L1_Mus2 LINE L1 -1 6565 6222 2 1260 4180 153 96 10 chr5 88518957 88519235 -64018024 - Lx3_Mus LINE L1 -633 6376 6096 2 1260 3124 115 6 10 chr5 88519235 88519729 -64017530 + L1_Mur1 LINE L1 4945 5436 -450 2 1260 182 100 0 70 chr5 88519914 88519957 -64017302 + A-rich Low_complexity Low_complexity 3 42 0 2 1260 516 32 0 0 chr5 88521048 88521110 -64016149 + (TTTC)n Simple_repeat Simple_repeat 1 62 0 2 1260 230 0 33 0 chr5 88521122 88521152 -64016107 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2 1260 23166 116 35 7 chr5 88521211 88523074 -64014185 - L1_Mus2 LINE L1 0 6566 4678 2 1260 210 37 0 0 chr5 88523074 88523101 -64014158 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1260 23166 139 30 14 chr5 88523101 88525934 -64011325 - L1_Mus2 LINE L1 -1206 4677 1796 2 1260 1509 190 21 4 chr5 88525935 88526215 -64011044 - Lx3_Mus LINE L1 -52 6957 6673 3 1260 231 36 0 0 chr5 88526628 88526656 -64010603 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1260 361 340 96 10 chr5 88528069 88528360 -64008899 + MER2 DNA MER2_type 25 340 -5 3 1260 1994 192 24 53 chr5 88529188 88529601 -64007658 - Lx2 LINE L1 -430 6567 6167 3 1260 1177 159 34 8 chr5 88529592 88529827 -64007432 + L1_Mur2 LINE L1 4244 4484 -1393 3 1260 5969 140 47 15 chr5 88531238 88532319 -64004940 - Lx LINE L1 -2 6652 5541 3 1260 6034 39 0 0 chr5 88532640 88533361 -64003898 + L1Md_T LINE L1 5862 6582 0 3 1260 204 67 0 0 chr5 88533373 88533403 -64003856 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1260 22 35 0 0 chr5 88534593 88534622 -64002637 + AT_rich Low_complexity Low_complexity 1 29 0 3 1260 21 0 0 0 chr5 88538537 88538558 -63998701 + AT_rich Low_complexity Low_complexity 1 21 0 3 1260 207 0 0 0 chr5 88538797 88538820 -63998439 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1260 893 124 0 0 chr5 88538826 88538955 -63998304 - B1_Mus1 SINE Alu -17 131 3 4 1260 357 24 0 0 chr5 88539068 88539110 -63998149 + (TTA)n Simple_repeat Simple_repeat 1 42 0 4 1260 381 55 0 18 chr5 88539110 88539165 -63998094 - L1Md_F2 LINE L1 -23 6559 6506 4 1260 1815 118 16 33 chr5 88539587 88539893 -63997366 + L1_Mus2 LINE L1 6264 6564 -2 4 1260 208 154 0 25 chr5 88540162 88540202 -63997057 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1260 273 273 45 0 chr5 88540547 88540613 -63996646 + RMER19B LTR ERVK 815 883 -19 4 1260 741 126 0 0 chr5 88540625 88540768 -63996491 + (TC)n Simple_repeat Simple_repeat 1 143 0 4 1260 957 227 22 22 chr5 88540769 88541044 -63996215 + L1_Mur2 LINE L1 2061 2335 -3542 4 1260 473 185 9 44 chr5 88541033 88541146 -63996113 + L1_Mur2 LINE L1 4415 4523 -1354 4 1260 2883 156 42 37 chr5 88541148 88542531 -63994728 + L1Md_Gf LINE L1 220 1612 -4274 4 1260 1164 148 0 24 chr5 88542531 88542738 -63994521 - L1VL1 LINE L1 -6220 202 1 5 1260 189 74 0 0 chr5 88543111 88543138 -63994121 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1260 240 35 0 0 chr5 88543135 88543164 -63994095 + (CCA)n Simple_repeat Simple_repeat 1 29 0 5 1260 789 248 3 40 chr5 88543165 88543467 -63993792 + Lx5 LINE L1 2032 2322 -3555 5 1260 4709 221 102 17 chr5 88543466 88544962 -63992297 + Lx5 LINE L1 4408 6037 -1013 5 1260 785 338 212 43 chr5 88544939 88545563 -63991696 + Lx5 LINE L1 6148 6877 -173 5 1260 5476 90 14 3 chr5 88545598 88546380 -63990879 - L1_Mus2 LINE L1 0 6566 5776 5 1260 1128 135 51 0 chr5 88546380 88546558 -63990701 + L1_Mus2 LINE L1 5564 5750 -133 5 1260 381 263 30 84 chr5 88546564 88546730 -63990529 + Lx6 LINE L1 7276 7432 -28 5 1260 4707 220 22 12 chr5 88547747 88548757 -63988502 + Lx4A LINE L1 6028 7047 -11 5 1260 234 0 0 0 chr5 88548763 88548789 -63988470 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 5 1260 993 180 6 11 chr5 88548819 88548999 -63988260 - ORR1B1 LTR MaLR -46 348 170 5 1260 30 77 0 0 chr5 88550422 88550487 -63986772 + AT_rich Low_complexity Low_complexity 1 65 0 5 1260 4228 131 5 3 chr5 88550686 88551344 -63985915 - L1_Mus3 LINE L1 -8 6630 5972 6 1260 2514 92 87 0 chr5 88551346 88551786 -63985473 + L1_Mus3 LINE L1 5510 5988 -650 6 1260 233 252 89 20 chr5 88551793 88551894 -63985365 + Lx7 LINE L1 5779 5886 -1810 6 1260 248 0 0 30 chr5 88552409 88552442 -63984817 + (CAT)n Simple_repeat Simple_repeat 3 34 0 6 1260 3604 177 57 37 chr5 88552514 88552966 -63984293 + RLTR13D1 LTR ERVK 1 453 -353 6 1260 5658 36 0 0 chr5 88552966 88553636 -63983623 + L1Md_T LINE L1 5913 6582 0 6 1260 3604 177 57 37 chr5 88553636 88553973 -63983286 + RLTR13D1 LTR ERVK 454 806 0 6 1260 369 0 0 0 chr5 88554515 88554556 -63982703 + (TA)n Simple_repeat Simple_repeat 1 41 0 6 1260 276 30 0 0 chr5 88554556 88554588 -63982671 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1260 558 158 10 0 chr5 88555642 88555743 -63981516 + RLTR16 LTR ERVK 299 400 -105 6 1260 1085 261 31 41 chr5 88555772 88556164 -63981095 - Lx9 LINE L1 -458 7186 6799 6 1260 2126 171 33 0 chr5 88556161 88556529 -63980730 + L1VL4 LINE L1 256 635 -5667 6 1260 3243 173 54 4 chr5 88556530 88557211 -63980048 + L1_Mur2 LINE L1 3739 4453 -1424 7 1260 5490 139 42 27 chr5 88559208 88560305 -63976954 - Lx LINE L1 0 6654 5541 7 1260 2820 254 77 20 chr5 88560357 88561356 -63975903 - Lx9 LINE L1 -1 7643 6588 7 1260 540 30 0 0 chr5 88561891 88561957 -63975302 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 1260 1867 273 104 14 chr5 88563041 88563770 -63973489 + Lx7 LINE L1 6567 7361 -335 7 1260 625 203 128 0 chr5 88564008 88564156 -63973103 + URR1A DNA MER1_type 58 224 -2 7 1260 234 245 0 0 chr5 88564491 88564540 -63972719 + GA-rich Low_complexity Low_complexity 1 49 0 7 1260 2027 166 60 22 chr5 88564674 88565075 -63972184 - Lx LINE L1 -7 6647 6232 7 1260 21 57 0 0 chr5 88566146 88566181 -63971078 + AT_rich Low_complexity Low_complexity 1 35 0 7 1260 6323 115 12 16 chr5 88566181 88567213 -63970046 - Lx3_Mus LINE L1 -67 6942 5916 7 1260 3644 114 15 76 chr5 88567206 88567499 -63969760 - MusHAL1 LINE L1 -1957 755 516 8 1260 1179 54 7 0 chr5 88567499 88567646 -63969613 - B1_Mus1 SINE Alu 0 148 1 8 1260 3644 114 15 76 chr5 88567646 88568150 -63969109 - MusHAL1 LINE L1 -2197 515 7 8 1260 4858 138 74 2 chr5 88569358 88570211 -63967048 - Lx3_Mus LINE L1 -5 7004 6091 8 1260 3039 122 6 0 chr5 88570212 88570697 -63966562 + L1_Mur1 LINE L1 4949 5436 -450 8 1260 432 55 0 0 chr5 88570888 88570943 -63966316 + (GA)n Simple_repeat Simple_repeat 1 55 0 8 1260 204 250 0 0 chr5 88571523 88571571 -63965688 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 8 1260 2123 171 36 3 chr5 88572126 88572513 -63964746 - Lx3_Mus LINE L1 -1 7008 6609 8 1260 301 339 108 4 chr5 88574542 88574773 -63962486 + MER2 DNA MER2_type 25 279 -66 8 1260 39153 14 1 7 chr5 88574957 88581984 -63955275 - L1Md_A LINE L1 0 6582 1 8 1260 1928 149 6 18 chr5 88582733 88583067 -63954192 + Lx2 LINE L1 6667 6996 -1 8 1260 35 63 0 0 chr5 88583323 88583386 -63953873 + AT_rich Low_complexity Low_complexity 1 63 0 9 1260 605 207 235 0 chr5 88583399 88583678 -63953581 + L1_Mur3 LINE L1 2608 2962 -2915 9 1260 6983 220 72 26 chr5 88583674 88585871 -63951388 + L1_Mur3 LINE L1 3580 5878 -2 9 1260 962 169 22 43 chr5 88585891 88586076 -63951183 + RMER17A2 LTR ERVK 1 181 -725 9 1260 4646 72 0 7 chr5 88586078 88586694 -63950565 - L1Md_F2 LINE L1 -12 6570 5959 9 1260 6017 75 0 0 chr5 88586694 88587545 -63949714 + L1_Mm LINE L1 3512 4362 -1521 9 1260 2686 162 52 48 chr5 88587545 88588253 -63949006 + RMER17A2 LTR ERVK 156 906 0 9 1260 3971 209 36 31 chr5 88588303 88589303 -63947956 + Lx4A LINE L1 6053 7057 -1 9 1260 2018 83 31 16 chr5 88591483 88591800 -63945459 - RLTRETN_Mm LTR ERVK 0 322 1 9 1260 24087 30 11 11 chr5 88591800 88596384 -63940875 - MMETn-int LTR ERVK 0 4844 180 9 1260 2831 34 0 0 chr5 88596355 88596709 -63940550 - ETnERV-int LTR ERVK -2960 354 1 9 1260 2018 83 31 16 chr5 88596709 88597026 -63940233 - RLTRETN_Mm LTR ERVK 0 322 1 9 1260 22713 107 46 5 chr5 88597916 88603280 -63933979 - L1Md_F2 LINE L1 -12 6570 484 9 157 863 91 0 0 chr5 88604596 88604728 -63932531 + L1_Mur1 LINE L1 2996 3127 -2759 9 1261 37130 32 2 7 chr5 88604729 88610929 -63926330 - L1Md_T LINE L1 0 6582 422 1 1261 3135 235 99 7 chr5 88610931 88612055 -63925204 + Lx5 LINE L1 4811 6039 -1011 1 1261 1263 103 0 0 chr5 88612180 88612364 -63924895 + MT2C_Mm LTR ERVL 2 185 -290 1 1261 643 291 22 48 chr5 88612364 88612595 -63924664 + Lx6 LINE L1 7210 7434 -26 1 1261 21 0 0 0 chr5 88613321 88613342 -63923917 + AT_rich Low_complexity Low_complexity 1 21 0 1 1261 913 186 22 0 chr5 88613708 88613891 -63923368 + Lx3_Mus LINE L1 6823 7009 0 1 1261 1053 46 0 0 chr5 88614319 88614450 -63922809 + (TCC)n Simple_repeat Simple_repeat 3 133 0 1 1261 512 198 10 0 chr5 88616113 88616214 -63921045 + RLTR16 LTR ERVK 299 400 -105 1 1261 982 257 22 79 chr5 88616230 88616636 -63920623 - Lx9 LINE L1 -460 7184 6802 1 1261 2074 186 0 23 chr5 88616637 88617027 -63920232 + L1VL4 LINE L1 257 637 -5665 1 1261 3033 202 50 13 chr5 88617016 88617713 -63919546 + L1_Mur2 LINE L1 3731 4453 -1424 1 1261 23 0 0 0 chr5 88618242 88618265 -63918994 + AT_rich Low_complexity Low_complexity 1 23 0 1 1261 5856 158 18 10 chr5 88619688 88620790 -63916469 - Lx LINE L1 0 6654 5541 1 1261 2694 286 75 13 chr5 88620843 88621837 -63915422 - Lx9 LINE L1 -1 7643 6588 1 1261 285 155 0 0 chr5 88622390 88622448 -63914811 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1 1261 21 36 0 0 chr5 88622599 88622627 -63914632 + AT_rich Low_complexity Low_complexity 1 28 0 1 1261 184 352 40 32 chr5 88622820 88622946 -63914313 + L4 LINE RTE 1689 1815 -214 1 1261 212 184 0 0 chr5 88623520 88623558 -63913701 + T-rich Low_complexity Low_complexity 1 38 0 1 1261 2031 278 99 8 chr5 88623569 88624303 -63912956 + Lx7 LINE L1 6567 7367 -329 1 1261 556 215 124 6 chr5 88624517 88624687 -63912572 + URR1B DNA MER1_type 45 222 -3 1 1261 200 271 0 0 chr5 88625017 88625065 -63912194 + GA-rich Low_complexity Low_complexity 1 48 0 1 1261 2140 157 30 86 chr5 88625204 88625644 -63911615 - Lx LINE L1 -8 6646 6232 1 1261 11866 190 107 22 chr5 88626651 88629572 -63907687 - L1_Mm LINE L1 -1105 4778 1609 1 1261 4217 152 94 6 chr5 88630478 88631041 -63906218 - Lx3_Mus LINE L1 -1 7008 6374 1 1261 2210 102 5 73 chr5 88631041 88631410 -63905849 - L1_Mus2 LINE L1 -1 6565 6222 1 1261 4217 152 94 6 chr5 88631410 88631687 -63905572 - Lx3_Mus LINE L1 -636 6373 6095 1 1261 2990 125 6 12 chr5 88631687 88632182 -63905077 + L1_Mur1 LINE L1 4945 5436 -450 1 1261 210 91 0 0 chr5 88632370 88632403 -63904856 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1261 405 102 0 0 chr5 88633532 88633591 -63903668 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1 1261 24244 118 8 6 chr5 88633655 88635561 -63901698 - L1_Mus2 LINE L1 0 6566 4674 1 1261 212 0 0 35 chr5 88635561 88635590 -63901669 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1261 24244 138 12 11 chr5 88635590 88638449 -63898810 - L1_Mus2 LINE L1 -1210 4673 1796 1 1261 1472 183 22 0 chr5 88638453 88638726 -63898533 - Lx3_Mus LINE L1 -55 6954 6676 1 1261 286 382 97 17 chr5 88640526 88640816 -63896443 + MER2 DNA MER2_type 25 337 -8 1 1261 3495 199 4 23 chr5 88641646 88642350 -63894909 - Lx2 LINE L1 -432 6565 5875 1 1261 2486 146 42 2 chr5 88642350 88642777 -63894482 + Lx2 LINE L1 6554 6997 0 1 1261 21 71 0 0 chr5 88643033 88643075 -63894184 + AT_rich Low_complexity Low_complexity 1 42 0 1 1261 181 146 47 37 chr5 88643080 88643187 -63894072 + (TATAA)n Simple_repeat Simple_repeat 1 108 0 1 1261 194 152 56 19 chr5 88643270 88643377 -63893882 + (TTATA)n Simple_repeat Simple_repeat 4 114 0 1 1261 22 35 0 0 chr5 88643407 88643436 -63893823 + AT_rich Low_complexity Low_complexity 1 29 0 1 1261 537 203 24 0 chr5 88643453 88643576 -63893683 + Lx4A LINE L1 2618 2743 -3137 1 1261 7662 230 66 19 chr5 88643593 88645482 -63891777 + Lx4A LINE L1 2819 5436 -441 1 1261 624 27 0 0 chr5 88645482 88645556 -63891703 + (TAAAA)n Simple_repeat Simple_repeat 2 75 0 1 1261 7662 225 27 9 chr5 88645556 88646086 -63891173 + Lx4A LINE L1 5437 5981 -1069 1 1261 4303 203 38 2 chr5 88646143 88647047 -63890212 + Lx4A LINE L1 6120 7055 -3 1 1261 27 29 0 0 chr5 88647048 88647082 -63890177 + AT_rich Low_complexity Low_complexity 1 34 0 1 1261 9683 18 4 0 chr5 88647299 88648438 -63888821 - L1Md_A LINE L1 -1226 4657 3514 1 1261 8086 18 4 0 chr5 88648427 88649365 -63887894 + L1Md_A LINE L1 4645 5586 -297 1 1261 8307 36 1 0 chr5 88649365 88650359 -63886900 + L1Md_A LINE L1 5587 6581 -1 1 1261 4901 142 36 13 chr5 88650510 88651561 -63885698 + L1VL4 LINE L1 239 1325 -2234 1 1261 387 0 0 0 chr5 88651561 88651604 -63885655 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1261 4901 122 85 8 chr5 88651604 88652077 -63885182 + L1VL4 LINE L1 1326 1821 -1738 1 1261 5841 161 16 10 chr5 88652074 88653166 -63884093 + Lx2 LINE L1 5543 6643 -354 1 1261 940 201 14 9 chr5 88653166 88653387 -63883872 + Lx LINE L1 6427 6648 -6 1 1261 1104 206 17 9 chr5 88654025 88654255 -63883004 - ORR1B1 LTR MaLR 0 394 163 1 1261 2326 218 103 65 chr5 88654720 88655587 -63881672 - RLTR13D6 LTR ERVK -56 846 1 1 1261 213 261 0 0 chr5 88657143 88657189 -63880070 + CT-rich Low_complexity Low_complexity 1 46 0 1 1261 1011 250 33 16 chr5 88657346 88657590 -63879669 - Lx9 LINE L1 -809 6835 6588 1 1261 715 240 50 29 chr5 88658089 88658368 -63878891 - L1_Rod LINE L1 -4360 1487 1203 1 1261 8063 90 9 2 chr5 88658369 88660144 -63877115 - L1Md_F2 LINE L1 -7 6575 4784 1 1261 939 280 174 20 chr5 88662403 88662942 -63874317 + Lx7 LINE L1 6762 7383 -313 1 1261 335 45 0 22 chr5 88662982 88663027 -63874232 - HAL1-3A_ME LINE L1 -839 2019 1976 1 1261 360 182 0 0 chr5 88663027 88663115 -63874144 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 1261 657 214 207 5 chr5 88663213 88663401 -63873858 + URR1A DNA MER1_type 1 226 0 1 1261 316 252 28 59 chr5 88663722 88663975 -63873284 - RMER17D2 LTR ERVK -328 481 237 1 1261 242 75 50 0 chr5 88664133 88664173 -63873086 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1 1261 8352 142 18 8 chr5 88664173 88665597 -63871662 - Lx3A LINE L1 -10 6971 5537 1 1261 4566 131 88 78 chr5 88665596 88666643 -63870616 - Lx3A LINE L1 -1839 4047 2991 1 1261 28437 95 13 16 chr5 88667948 88672915 -63864344 + L1Md_A LINE L1 484 5415 -468 1 1261 1450 120 4 43 chr5 88672918 88673153 -63864106 - IAPEY_LTR LTR ERVK -69 316 91 1 1261 27615 25 1 0 chr5 88673153 88677233 -63860026 - L1Md_A LINE L1 -2 6580 2498 1 1261 398 180 9 33 chr5 88677233 88677326 -63859933 - IAPEY_LTR LTR ERVK -281 104 1 1 1261 694 184 22 7 chr5 88677326 88677452 -63859807 - MTC-int LTR MaLR -1128 130 3 1 1261 1257 204 188 25 chr5 88677452 88677814 -63859445 - MTC LTR MaLR 0 421 1 1 1261 1576 288 29 34 chr5 88677823 88678441 -63858818 + Lx9 LINE L1 6808 7422 -222 1 1261 3334 70 0 13 chr5 88678446 88678922 -63858337 - L1_Mm LINE L1 -3119 2764 2295 1 1261 6290 69 0 0 chr5 88678922 88679767 -63857492 + L1Md_F2 LINE L1 4742 5586 -297 1 1261 8000 52 1 0 chr5 88679767 88680751 -63856508 + L1Md_F2 LINE L1 5587 6571 -11 1 1261 878 113 157 0 chr5 88680955 88681114 -63856145 + MT2C_Mm LTR ERVL 2 185 -290 1 1261 484 314 22 48 chr5 88681114 88681345 -63855914 + Lx6 LINE L1 7210 7434 -26 1 1261 22 35 0 0 chr5 88681527 88681556 -63855703 + AT_rich Low_complexity Low_complexity 1 29 0 1 1261 733 195 75 0 chr5 88682529 88682703 -63854556 + Lx3_Mus LINE L1 6823 7009 0 1 1261 627 147 0 0 chr5 88683129 88683245 -63854014 + (TCC)n Simple_repeat Simple_repeat 3 118 0 1 1261 331 374 73 17 chr5 88683908 88684210 -63853049 + MER2 DNA MER2_type 22 340 -5 1 1261 4904 147 12 70 chr5 88684499 88685456 -63851803 + RLTR13D6 LTR ERVK 1 902 0 1 1261 455 211 21 0 chr5 88685873 88685968 -63851291 + RLTR16 LTR ERVK 299 395 -110 1 1261 988 251 25 48 chr5 88685987 88686384 -63850875 - Lx9 LINE L1 -458 7186 6799 1 1261 2183 160 3 10 chr5 88686381 88686767 -63850492 + L1VL4 LINE L1 256 638 -5664 1 1261 3334 162 35 7 chr5 88686772 88687461 -63849798 + L1_Mur2 LINE L1 3746 4453 -1424 1 1261 2261 59 0 3 chr5 88687519 88687806 -63849453 + L1_Mus1 LINE L1 6282 6567 0 1 1261 33593 45 1 3 chr5 88688310 88693564 -63843695 + L1Md_T LINE L1 250 5589 -297 1 1261 8470 33 0 0 chr5 88693564 88694560 -63842699 + L1Md_T LINE L1 5590 6585 0 1 1261 5823 133 54 14 chr5 88696041 88697117 -63840142 - Lx LINE L1 0 6654 5540 1 1261 704 254 151 3 chr5 88697168 88697472 -63839787 - Lx9 LINE L1 -1 7643 7295 1 1261 599 153 0 0 chr5 88697471 88697569 -63839690 - Lx2 LINE L1 -319 6678 6581 1 1261 8943 111 19 8 chr5 88698646 88700481 -63836778 - Lx3_Mus LINE L1 0 7009 5152 1 1261 5945 121 78 1 chr5 88700884 88701954 -63835305 - L1_Mus4 LINE L1 -7 6629 5494 1 1261 887 149 40 7 chr5 88701955 88702104 -63835155 - RMER17D LTR ERVK -4 885 732 1 1261 2058 176 30 7 chr5 88702105 88702540 -63834719 - L1_Mus4 LINE L1 -512 5365 4921 1 1261 4667 94 6 35 chr5 88702544 88703498 -63833761 + L1_Mus3 LINE L1 5169 6092 -546 1 1261 2626 170 43 14 chr5 88703498 88704059 -63833200 - L1_Mus4 LINE L1 -1824 4062 3486 1 1261 5786 159 13 9 chr5 88704054 88705727 -63831532 - L1VL4 LINE L1 -1687 1872 195 1 1261 5038 130 80 1 chr5 88706945 88707794 -63829465 - Lx3_Mus LINE L1 -3 7006 6091 1 1261 3216 86 2 12 chr5 88707796 88708281 -63828978 + L1_Mur1 LINE L1 4957 5436 -450 1 1261 207 156 44 0 chr5 88709655 88709690 -63827569 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 1 1261 2236 158 30 0 chr5 88709690 88710063 -63827196 - Lx3_Mus LINE L1 -18 6991 6608 1 1261 207 156 44 0 chr5 88710063 88710072 -63827187 + (TTTA)n Simple_repeat Simple_repeat 4 12 0 1 1261 24 53 0 0 chr5 88710777 88710815 -63826444 + AT_rich Low_complexity Low_complexity 1 38 0 1 1261 3682 183 4 0 chr5 88712648 88713338 -63823921 - Lx2 LINE L1 -430 6567 5875 1 1261 2801 138 5 2 chr5 88713338 88713780 -63823479 + Lx2 LINE L1 6554 6996 -1 1 1261 1855 39 8 8 chr5 88714019 88714253 -63823006 - L1Md_A LINE L1 0 6582 6349 1 1261 1982 13 0 0 chr5 88714253 88714487 -63822772 + L1_Mm LINE L1 5625 5858 -25 1 1261 2560 80 0 3 chr5 88714493 88714831 -63822428 - L1_Mus2 LINE L1 0 6566 6230 1 1261 21 57 0 0 chr5 88714849 88714884 -63822375 + AT_rich Low_complexity Low_complexity 1 35 0 1 1261 685 197 267 1 chr5 88714890 88715194 -63822065 + Lx4B LINE L1 2576 2963 -2917 1 1261 7053 214 86 31 chr5 88715172 88715338 -63821921 + Lx4B LINE L1 3563 3718 -2159 1 1261 1124 82 0 0 chr5 88715338 88715484 -63821775 + B1_Mus2 SINE Alu 1 146 -1 1 1261 7053 223 86 28 chr5 88715484 88718587 -63818672 + Lx4B LINE L1 3719 7045 -13 1 1261 9130 64 11 4 chr5 88718981 88720263 -63816996 + L1_Mm LINE L1 3608 4898 -985 1 1261 2224 156 12 31 chr5 88720263 88720680 -63816579 - RLTR9E LTR ERVK 0 409 1 2 1261 4703 138 42 11 chr5 88720748 88721661 -63815598 - ETnERV2-int LTR ERVK -3353 4053 3055 2 1261 1428 58 0 0 chr5 88721729 88721920 -63815339 + L1Md_F2 LINE L1 5924 6114 -468 2 1261 2239 37 0 4 chr5 88721920 88722193 -63815066 + L1Md_F2 LINE L1 6309 6580 -2 2 1261 615 165 26 0 chr5 88722301 88722416 -63814843 - RLTR19-int LTR ERVK -5082 1055 938 2 1261 4848 46 5 0 chr5 88722732 88723316 -63813943 + LTRIS_Mus LTR ERV1 1 587 0 2 1261 315 230 0 13 chr5 88723559 88723634 -63813625 - ETnERV2-int LTR ERVK -5080 2164 2091 2 1261 748 174 6 62 chr5 88723779 88723957 -63813302 - MMETn-int LTR ERVK -4676 168 1 2 1261 2081 161 14 51 chr5 88723962 88724375 -63812884 - RLTR9E LTR ERVK -11 398 1 2 1261 4698 84 3 1 chr5 88724375 88725053 -63812206 + L1Md_F2 LINE L1 4893 5571 -312 2 1261 7340 79 7 5 chr5 88725054 88726044 -63811215 + L1Md_F2 LINE L1 5590 6581 -1 2 1261 201 171 0 0 chr5 88726076 88726111 -63811148 + A-rich Low_complexity Low_complexity 1 35 0 2 1261 4993 130 30 16 chr5 88726111 88727674 -63809585 + L1VL4 LINE L1 238 1822 -1737 2 1261 5679 148 20 20 chr5 88727671 88728772 -63808487 + Lx2 LINE L1 5543 6643 -354 2 1261 1211 156 23 5 chr5 88728772 88728991 -63808268 + Lx2 LINE L1 6775 6997 0 2 1261 22 0 0 0 chr5 88730159 88730181 -63807078 + AT_rich Low_complexity Low_complexity 1 22 0 2 1261 702 123 0 0 chr5 88730519 88730649 -63806610 + (CAGA)n Simple_repeat Simple_repeat 3 132 0 2 1261 3294 106 8 2 chr5 88730865 88731337 -63805922 + L1_Mus3 LINE L1 6156 6630 -8 2 1261 8432 122 18 2 chr5 88731387 88732816 -63804443 - Lx3A LINE L1 -2 6979 5537 2 1261 2089 107 0 15 chr5 88732817 88733158 -63804101 - Lx3A LINE L1 -1841 4045 3710 2 1261 3144 167 23 0 chr5 88733158 88733715 -63803544 + L1VL1 LINE L1 1 570 -5852 2 157 30347 90 19 1 chr5 88733920 88739735 -63797524 - L1_Mus1 LINE L1 0 6567 639 2 1262 555 174 0 0 chr5 88739731 88739829 -63797430 - L1_Mus1 LINE L1 -6323 315 218 2 1262 21 57 0 0 chr5 88739946 88739981 -63797278 + AT_rich Low_complexity Low_complexity 1 35 0 2 1262 538 103 11 22 chr5 88740093 88740182 -63797077 + RLTR45 LTR ERVK 395 482 0 2 1262 2127 204 86 55 chr5 88740260 88740304 -63796955 - RMER19B LTR ERVK -12 890 848 2 1262 2374 125 52 8 chr5 88740304 88740690 -63796569 - RLTR9D LTR ERVK 0 403 1 2 1262 2127 216 83 67 chr5 88740690 88741290 -63795969 - RMER19B LTR ERVK -55 847 1 2 1262 241 336 62 35 chr5 88741389 88741534 -63795725 - MLT1E3 LTR MaLR -31 593 445 2 1262 229 296 14 0 chr5 88741697 88741768 -63795491 - L2 LINE L2 -2455 964 893 2 1262 437 148 25 0 chr5 88741794 88741875 -63795384 + L1_Mus2 LINE L1 6484 6566 0 2 1262 489 304 43 37 chr5 88744079 88744256 -63793003 - RMER30 DNA MER1_type -5 197 19 2 1262 1217 55 18 0 chr5 88744256 88744420 -63792839 + (GGAGAA)n Simple_repeat Simple_repeat 3 169 0 2 1262 487 27 95 0 chr5 88749505 88749579 -63787680 - L1_Mus3 LINE L1 0 6638 6558 2 1262 23 97 0 0 chr5 88749660 88749732 -63787527 + AT_rich Low_complexity Low_complexity 1 72 0 2 1262 470 32 32 0 chr5 88749830 88749893 -63787366 + (GAAAA)n Simple_repeat Simple_repeat 2 66 0 2 1262 834 166 7 0 chr5 88750616 88750755 -63786504 + B1_Mur4 SINE Alu 6 145 -5 2 1262 207 0 0 0 chr5 88750760 88750783 -63786476 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2 1262 1006 154 5 16 chr5 88750891 88751076 -63786183 + B2_Mm2 SINE B2 1 183 -12 2 1262 188 356 0 40 chr5 88751825 88751901 -63785358 - L2c LINE L2 -47 3340 3268 2 1262 232 238 175 0 chr5 88752009 88752072 -63785187 - MER58A DNA MER1_type -139 85 12 2 1262 225 0 0 0 chr5 88752116 88752141 -63785118 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1262 203 297 26 39 chr5 88752145 88752222 -63785037 - MIR SINE MIR -105 157 82 2 1262 252 310 146 14 chr5 88752829 88753048 -63784211 + L2 LINE L2 2485 2732 -687 2 1262 27 29 0 0 chr5 88753532 88753566 -63783693 + AT_rich Low_complexity Low_complexity 1 34 0 2 1262 1233 98 23 0 chr5 88754074 88754247 -63783012 + B2_Mm2 SINE B2 2 178 -17 2 1262 216 97 0 0 chr5 88754265 88754296 -63782963 + (GAA)n Simple_repeat Simple_repeat 1 31 0 2 1262 552 140 0 0 chr5 88754307 88754400 -63782859 + (TAG)n Simple_repeat Simple_repeat 3 95 0 2 1262 1104 187 22 27 chr5 88754705 88754930 -63782329 - ORR1D1 LTR MaLR -150 224 1 2 1262 486 253 79 16 chr5 88754988 88755177 -63782082 - Lx7 LINE L1 -1784 5912 5712 2 1262 872 175 26 26 chr5 88755183 88755377 -63781882 - RLTR11A LTR ERVK -118 409 216 2 1262 352 143 18 45 chr5 88755379 88755489 -63781770 + CT-rich Low_complexity Low_complexity 5 111 0 2 1262 1124 201 7 70 chr5 88755497 88755770 -63781489 - RLTR11A LTR ERVK -270 258 3 2 1262 2697 140 33 49 chr5 88755837 88756325 -63780934 - Lx4A LINE L1 0 7058 6579 2 1262 289 246 22 60 chr5 88756373 88756507 -63780752 + L1MA5 LINE L1 6059 6187 -113 2 1262 515 78 0 13 chr5 88756525 88756603 -63780656 + (TA)n Simple_repeat Simple_repeat 1 77 0 2 1262 252 260 62 0 chr5 88756640 88756736 -63780523 + L1MA5 LINE L1 6174 6275 -25 2 1262 225 262 29 26 chr5 88757089 88757384 -63779875 + (CCA)n Simple_repeat Simple_repeat 1 295 0 2 1262 198 254 0 0 chr5 88757400 88757526 -63779733 + (CAA)n Simple_repeat Simple_repeat 2 127 0 2 1262 369 62 0 0 chr5 88758054 88758102 -63779157 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 2 1262 1808 173 22 32 chr5 88758123 88758494 -63778765 + L1_Mur2 LINE L1 505 871 -6215 2 1262 524 201 19 65 chr5 88758497 88758651 -63778608 - RLTR43A LTR ERVK -2 362 216 2 1262 1725 117 19 0 chr5 88758854 88759149 -63778110 + L1_Mur2 LINE L1 867 1232 -6496 2 1262 2295 196 2 77 chr5 88759528 88760074 -63777185 - RLTR16 LTR ERVK 0 505 1 2 1262 2550 113 134 2 chr5 88760093 88760510 -63776749 + L1_Mus4 LINE L1 6165 6636 0 2 1262 433 336 73 4 chr5 88760668 88760928 -63776331 + L1M3e LINE L1 56 333 -6697 2 1262 385 247 219 31 chr5 88760951 88761147 -63776112 + L1M3e LINE L1 1630 1862 -5168 2 1262 257 309 0 0 chr5 88761148 88761216 -63776043 + Lx8 LINE L1 7158 7225 -248 2 1262 21 36 0 0 chr5 88761259 88761287 -63775972 + AT_rich Low_complexity Low_complexity 1 28 0 2 1262 277 261 11 11 chr5 88761392 88761485 -63775774 + L1M3e LINE L1 1858 1950 -5080 2 1262 23 68 0 0 chr5 88761563 88761607 -63775652 + AT_rich Low_complexity Low_complexity 1 44 0 2 1262 829 139 72 6 chr5 88761648 88761814 -63775445 - MusHAL1 LINE L1 -575 2137 1961 2 1262 245 170 0 19 chr5 88761813 88761867 -63775392 + L1_Mur2 LINE L1 4702 4754 -1123 2 1262 6659 97 9 0 chr5 88761861 88762840 -63774419 + L1_Mm LINE L1 4866 5853 -30 2 1262 1270 196 29 36 chr5 88762846 88763122 -63774137 - RLTR46 LTR ERVK -5 315 42 2 1262 4635 97 50 14 chr5 88763131 88763824 -63773435 + L1_Mus2 LINE L1 5849 6566 0 2 1262 338 119 10 0 chr5 88763828 88763900 -63773359 + Lx LINE L1 5719 5793 -861 2 1262 7191 36 1 0 chr5 88763901 88764756 -63772503 + L1Md_F3 LINE L1 5710 6565 -19 2 1262 1500 81 41 0 chr5 88764791 88765012 -63772247 + Lx LINE L1 5783 6012 -642 2 1262 6503 49 0 0 chr5 88765009 88765842 -63771417 - L1_Mm LINE L1 -127 5756 4924 2 1262 5821 18 0 0 chr5 88765840 88766812 -63770447 - L1Md_T LINE L1 -418 6164 5193 2 1262 3367 36 0 0 chr5 88766804 88767224 -63770035 + L1Md_T LINE L1 6163 6582 0 2 1262 3088 149 36 2 chr5 88767241 88767794 -63769465 - L1_Mm LINE L1 -937 4946 4375 2 1262 5046 99 36 10 chr5 88767790 88768805 -63768454 + L1VL4 LINE L1 758 1798 -1761 2 1262 1871 137 0 0 chr5 88768789 88769104 -63768155 + L1_Mm LINE L1 3878 4192 -1691 2 1262 7154 78 1 13 chr5 88770131 88771413 -63765846 - L1_Mus1 LINE L1 -1 6566 5300 2 1262 227 163 0 0 chr5 88772826 88772869 -63764390 - Lx LINE L1 -145 6509 6467 2 1262 3182 177 52 51 chr5 88773529 88774272 -63762987 + Lx4A LINE L1 6027 6770 -288 2 1262 5431 128 66 29 chr5 88774294 88774696 -63762563 + Lx LINE L1 5604 6010 -644 2 1262 1096 95 0 7 chr5 88774696 88774833 -63762426 + B1_Mus2 SINE Alu 1 137 -10 2 1262 180 0 0 0 chr5 88774833 88774853 -63762406 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1262 5431 128 66 29 chr5 88774863 88775462 -63761797 + Lx LINE L1 6011 6642 -12 2 1262 1568 132 15 56 chr5 88775468 88775805 -63761454 + Lx2B LINE L1 5959 6281 -719 2 1262 3208 134 28 15 chr5 88775805 88776342 -63760917 - RLTR1D LTR ERV1 0 605 62 2 1262 3936 143 80 13 chr5 88776357 88777035 -63760224 + Lx2B LINE L1 6278 7000 0 2 1262 272 339 9 0 chr5 88777130 88777239 -63760020 + PB1D10 SINE Alu 1 110 -7 2 1262 2163 187 75 27 chr5 88777457 88777513 -63759746 - RMER19B LTR ERVK -1 901 854 2 1262 2310 141 52 8 chr5 88777513 88777899 -63759360 - RLTR9D LTR ERVK 0 403 1 2 1262 2163 218 74 61 chr5 88777899 88778498 -63758761 - RMER19B LTR ERVK -49 853 1 2 1262 1175 48 0 20 chr5 88778565 88778714 -63758545 + B1_Mus2 SINE Alu 1 146 -1 2 1262 307 321 34 43 chr5 88778790 88778907 -63758352 - MLT1E3 LTR MaLR -69 555 440 2 1262 224 296 14 0 chr5 88779064 88779135 -63758124 - L2 LINE L2 -2455 964 893 2 1262 489 112 25 0 chr5 88779161 88779241 -63758018 + L1_Mus2 LINE L1 6484 6565 -1 2 1262 21 0 0 0 chr5 88780494 88780515 -63756744 + AT_rich Low_complexity Low_complexity 1 21 0 2 1262 503 301 24 18 chr5 88781375 88781541 -63755718 + Charlie12 DNA MER1_type 9 175 -2698 2 1262 15213 96 12 8 chr5 88782706 88785770 -63751489 - L1Md_A LINE L1 -2412 3471 396 2 1262 14195 112 16 1 chr5 88785784 88788027 -63749232 - L1_Mm LINE L1 -588 5295 3020 2 1262 8414 93 18 10 chr5 88788045 88790230 -63747029 + Lx3A LINE L1 4776 6968 -13 2 1262 537 16 0 0 chr5 88790231 88790293 -63746966 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 2 1262 7548 50 14 1 chr5 88790674 88791824 -63745435 - L1Md_F2 LINE L1 -1 6581 5417 2 1262 243 260 47 8 chr5 88792332 88792460 -63744799 + L1MA6 LINE L1 5096 5228 -915 2 1262 23 0 0 0 chr5 88792651 88792674 -63744585 + AT_rich Low_complexity Low_complexity 1 23 0 2 1262 320 308 64 32 chr5 88792714 88792902 -63744357 + L1MA6 LINE L1 5741 5934 -366 2 1262 1148 76 58 16 chr5 88793023 88793211 -63744048 + Lx3_Mus LINE L1 6814 7009 0 2 1262 1239 52 11 6 chr5 88793211 88793343 -63743916 + (GAA)n Simple_repeat Simple_repeat 1 134 0 2 1262 1331 62 0 6 chr5 88793343 88793522 -63743737 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 1262 1531 9 7 6 chr5 88793525 88793743 -63743516 + (GAA)n Simple_repeat Simple_repeat 1 218 0 2 1262 264 175 62 12 chr5 88793791 88793872 -63743387 + Lx3A LINE L1 6897 6981 0 2 1262 200 222 0 0 chr5 88793873 88793918 -63743341 + A-rich Low_complexity Low_complexity 1 45 0 2 1262 257 192 39 0 chr5 88794038 88794090 -63743169 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 2 1262 6132 51 1 5 chr5 88794734 88795501 -63741758 + L1Md_F2 LINE L1 5805 6568 -14 2 1262 949 155 7 0 chr5 88796595 88796743 -63740516 + B1_Mur4 SINE Alu 2 150 0 3 1262 378 140 59 65 chr5 88797772 88797925 -63739334 - Lx9 LINE L1 -16 7628 7477 3 1262 915 211 40 5 chr5 88798174 88798374 -63738885 + B3 SINE B2 4 210 -6 3 1262 33 66 0 0 chr5 88799044 88799105 -63738154 + AT_rich Low_complexity Low_complexity 1 61 0 3 1262 22 35 0 0 chr5 88799515 88799544 -63737715 + AT_rich Low_complexity Low_complexity 1 29 0 3 1262 8334 145 37 58 chr5 88799987 88800248 -63737011 - RLTR21 LTR ERVK 0 1572 1304 3 1262 387 41 0 0 chr5 88800248 88800297 -63736962 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1262 8334 145 37 58 chr5 88800297 88801066 -63736193 - RLTR21 LTR ERVK -269 1303 563 3 1262 1489 0 0 0 chr5 88801066 88801238 -63736021 + L1Md_T LINE L1 6411 6582 0 3 1262 8334 145 37 58 chr5 88801238 88801811 -63735448 - RLTR21 LTR ERVK -1010 562 1 3 1262 275 303 38 76 chr5 88802105 88802237 -63735022 + Charlie4z DNA MER1_type 38 164 -3 3 1262 192 200 21 43 chr5 88802891 88802938 -63734321 + L2a LINE L2 3294 3339 -87 3 1262 1070 182 36 0 chr5 88802998 88803190 -63734069 + B3 SINE B2 2 200 -16 3 1262 420 118 0 0 chr5 88803324 88803392 -63733867 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1262 216 310 0 0 chr5 88803562 88803620 -63733639 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1262 662 271 135 15 chr5 88803638 88803897 -63733362 - B4A SINE B4 -2 290 1 3 1262 246 196 36 0 chr5 88803917 88803973 -63733286 + L2c LINE L2 3110 3167 -220 3 1262 500 300 16 30 chr5 88808825 88808979 -63728280 + B3A SINE B2 28 178 -38 3 1262 291 130 0 0 chr5 88808979 88809033 -63728226 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1262 378 330 42 53 chr5 88809033 88809069 -63728190 + B3 SINE B2 179 214 -2 3 1262 22 56 0 0 chr5 88809761 88809797 -63727462 + AT_rich Low_complexity Low_complexity 1 36 0 3 1262 1150 82 0 19 chr5 88810400 88810412 -63726847 - B2_Mm2 SINE B2 -24 171 160 3 1262 180 0 0 0 chr5 88810412 88810432 -63726827 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 3 1262 1150 82 0 19 chr5 88810432 88810580 -63726679 - B2_Mm2 SINE B2 -36 159 14 3 1262 329 189 13 63 chr5 88811271 88811350 -63725909 - PB1D10 SINE Alu -37 80 6 3 1262 21 36 0 0 chr5 88811548 88811576 -63725683 + AT_rich Low_complexity Low_complexity 1 28 0 3 1262 21 0 0 0 chr5 88811762 88811783 -63725476 + AT_rich Low_complexity Low_complexity 1 21 0 3 1262 331 73 36 0 chr5 88814400 88814455 -63722804 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1262 1116 332 92 34 chr5 88815948 88816535 -63720724 - Arthur1B DNA Tip100 -469 756 136 3 1262 361 284 23 16 chr5 88816534 88816663 -63720596 + B1F1 SINE Alu 16 145 -4 3 1262 703 331 34 44 chr5 88816686 88816980 -63720279 + B4A SINE B4 2 292 0 3 1262 410 277 33 8 chr5 88817069 88817189 -63720070 - Arthur1B DNA Tip100 -1078 147 25 3 1262 11380 57 16 8 chr5 88817481 88817607 -63719652 + L1Md_F2 LINE L1 4016 4138 -1745 3 1262 2310 83 52 29 chr5 88817607 88817953 -63719306 + IAPEY2_LTR LTR ERVK 1 354 -3 3 1262 11380 57 16 8 chr5 88817953 88818587 -63718672 + L1Md_F2 LINE L1 4139 4772 -1111 3 1262 189 94 0 0 chr5 88818587 88818619 -63718640 + (AATTG)n Simple_repeat Simple_repeat 4 35 0 3 1262 11380 57 16 8 chr5 88818619 88819416 -63717843 + L1Md_F2 LINE L1 4773 5584 -299 3 1262 7950 51 2 0 chr5 88819416 88820441 -63716818 + L1Md_F2 LINE L1 5587 6582 0 3 1262 247 188 94 0 chr5 88820443 88820528 -63716731 - MER33 DNA MER1_type -50 274 182 3 1262 327 261 104 14 chr5 88820714 88820858 -63716401 + L1MC LINE L1 4456 4612 -1534 3 1262 375 311 55 0 chr5 88820888 88821071 -63716188 + L1MC2 LINE L1 6103 6295 -49 3 1262 3470 68 2 0 chr5 88821255 88821697 -63715562 + L1Md_F2 LINE L1 6125 6567 -15 3 1262 584 323 115 25 chr5 88822782 88823103 -63714156 + ORR1E LTR MaLR 6 355 -4 3 1262 265 317 28 28 chr5 88823235 88823342 -63713917 - B4A SINE B4 -1 291 185 3 1262 238 98 24 0 chr5 88823341 88823382 -63713877 - PB1D9 SINE Alu -63 57 16 3 1262 25 51 0 0 chr5 88825069 88825108 -63712151 + AT_rich Low_complexity Low_complexity 1 39 0 3 1262 1053 157 0 0 chr5 88825266 88825535 -63711724 + (TG)n Simple_repeat Simple_repeat 1 269 0 3 1262 421 279 7 21 chr5 88825612 88825755 -63711504 + L1_Rod LINE L1 5021 5161 -686 3 1262 471 247 100 26 chr5 88825753 88825982 -63711277 - L1MC4a LINE L1 -560 7322 7077 3 1262 229 312 13 13 chr5 88826844 88826922 -63710337 + MER5B DNA MER1_type 1 78 -100 3 1262 2647 204 120 35 chr5 88827516 88828372 -63708887 + RMER1B Other Other 18 1057 -9 3 1262 26 30 0 0 chr5 88828376 88828409 -63708850 + AT_rich Low_complexity Low_complexity 1 33 0 3 1262 21 36 0 0 chr5 88828685 88828713 -63708546 + AT_rich Low_complexity Low_complexity 1 28 0 3 1262 210 71 0 0 chr5 88831384 88831412 -63705847 + (TAGG)n Simple_repeat Simple_repeat 2 29 0 3 1262 333 357 20 27 chr5 88831412 88831559 -63705700 - RSINE1 SINE B4 -15 150 5 3 1262 25 0 0 0 chr5 88831726 88831751 -63705508 + AT_rich Low_complexity Low_complexity 1 25 0 3 1262 21 0 0 0 chr5 88831897 88831918 -63705341 + AT_rich Low_complexity Low_complexity 1 21 0 3 1262 360 94 0 0 chr5 88831918 88831971 -63705288 + L1VL2 LINE L1 348 400 -5935 3 1262 13138 97 60 13 chr5 88831978 88834016 -63703243 + L1VL2 LINE L1 2 2167 -1448 3 1262 1142 76 0 0 chr5 88834016 88834160 -63703099 + B1_Mus2 SINE Alu 1 144 -3 3 1262 1368 59 0 0 chr5 88834162 88834365 -63702894 + (GAAA)n Simple_repeat Simple_repeat 1 203 0 3 1262 13138 85 19 19 chr5 88834365 88835220 -63702039 + L1VL2 LINE L1 2168 3011 -604 3 1262 24 32 0 0 chr5 88835359 88835390 -63701869 + AT_rich Low_complexity Low_complexity 1 31 0 3 1262 405 234 0 0 chr5 88836161 88836255 -63701004 + L1Md_F3 LINE L1 335 428 -6191 3 1262 231 163 0 0 chr5 88836253 88836296 -63700963 + L1Md_F3 LINE L1 590 632 -5987 3 1262 15025 43 2 3 chr5 88836296 88838571 -63698688 + L1Md_F3 LINE L1 794 3164 -2722 3 1262 36809 6 0 0 chr5 88838572 88843944 -63693315 + L1Md_A LINE L1 214 5586 -297 3 1262 9047 3 0 0 chr5 88843944 88844940 -63692319 + L1Md_A LINE L1 5587 6582 0 3 1262 21219 43 4 0 chr5 88844940 88848356 -63688903 + L1Md_F3 LINE L1 3158 6587 0 3 1262 339 351 54 0 chr5 88848628 88848776 -63688483 - Charlie1 DNA MER1_type -2624 157 2 3 1262 31 0 0 0 chr5 88849049 88849080 -63688179 + AT_rich Low_complexity Low_complexity 1 31 0 3 1262 656 307 74 22 chr5 88849112 88849342 -63687917 + MLT2B4 LTR ERVL 1 242 -314 3 1262 2531 188 112 4 chr5 88850361 88850878 -63686381 - RMER15 LTR ERVL -2 573 1 3 1262 1616 31 5 0 chr5 88851326 88851517 -63685742 + B2_Mm1a SINE B2 1 192 -1 3 1262 1078 262 20 32 chr5 88851600 88851848 -63685411 + B4 SINE B4 9 253 -39 3 1262 735 116 0 0 chr5 88851858 88851970 -63685289 + (TAGA)n Simple_repeat Simple_repeat 3 114 0 3 1262 23 68 0 0 chr5 88851970 88852014 -63685245 + AT_rich Low_complexity Low_complexity 1 44 0 3 1262 606 69 9 29 chr5 88852151 88852256 -63685003 + L1Md_A LINE L1 643 745 -5979 3 1262 637 197 116 28 chr5 88852767 88852950 -63684309 + B3 SINE B2 1 191 -4 3 1262 254 354 55 12 chr5 88854054 88854217 -63683042 - L2 LINE L2 -428 2991 2822 3 1262 227 333 48 48 chr5 88854971 88855075 -63682184 + MIR SINE MIR 13 116 -146 3 1262 25 0 0 0 chr5 88855215 88855240 -63682019 + AT_rich Low_complexity Low_complexity 1 25 0 3 1262 202 295 124 11 chr5 88855459 88855548 -63681711 - L2c LINE L2 -1 3386 3288 3 1262 276 344 123 0 chr5 88855869 88856032 -63681227 + MIRb SINE MIR 14 196 -72 3 1262 239 229 43 0 chr5 88856619 88856689 -63680570 + MIR SINE MIR 68 140 -122 3 1262 186 125 0 0 chr5 88857397 88857407 -63679852 + (TA)n Simple_repeat Simple_repeat 1 10 0 3 1262 381 43 0 0 chr5 88857407 88857454 -63679805 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1262 186 125 0 0 chr5 88857454 88857475 -63679784 + (TA)n Simple_repeat Simple_repeat 2 22 0 3 1262 2699 71 0 6 chr5 88857646 88858000 -63679259 + L1Md_F2 LINE L1 6219 6570 -12 3 1262 6711 42 5 7 chr5 88858081 88858903 -63678356 - L1Md_F2 LINE L1 0 6582 5763 3 1262 21870 57 1 1 chr5 88858942 88862598 -63674661 - L1Md_F2 LINE L1 0 6582 2924 3 1262 512 95 0 0 chr5 88862592 88862666 -63674593 - MusHAL1 LINE L1 -1115 1597 1524 3 1262 469 50 0 0 chr5 88862665 88862725 -63674534 - L1_Mm LINE L1 -421 5462 5403 3 1262 296 255 27 45 chr5 88863102 88863116 -63674143 + MT2B LTR ERVL 152 163 -438 3 1262 419 196 78 10 chr5 88863116 88863219 -63674040 + B1_Mus2 SINE Alu 2 111 -36 3 1262 3075 127 26 2 chr5 88864135 88864694 -63672565 - Lx4B LINE L1 -949 6109 5534 3 1262 234 276 37 173 chr5 88864695 88864967 -63672292 + RLTR13B2 LTR ERVK 98 332 -490 3 1262 771 187 39 21 chr5 88864972 88865227 -63672032 + Lx4B LINE L1 6702 7057 -1 3 1262 2204 19 114 0 chr5 88865234 88865496 -63671763 - RLTR10B LTR ERVK 0 292 1 3 1262 1798 68 0 0 chr5 88865496 88865731 -63671528 - MMERVK10C-int LTR ERVK 0 7581 7347 3 1262 967 47 23 0 chr5 88865731 88865859 -63671400 - MMERVK10C-int LTR ERVK -2015 5566 5436 3 1262 1894 76 30 9 chr5 88865845 88866576 -63670683 - MMERVK10C-int LTR ERVK -7305 276 1 3 157 2182 23 115 0 chr5 88866576 88866837 -63670422 - RLTR10B LTR ERVK 0 292 2 3 1263 27 0 0 0 chr5 88866878 88866905 -63670354 + AT_rich Low_complexity Low_complexity 1 27 0 3 1263 609 346 6 12 chr5 88867894 88868058 -63669201 + RSINE1 SINE B4 3 165 0 3 1263 247 291 53 80 chr5 88868058 88868081 -63669178 + B2_Mm2 SINE B2 2 183 -12 3 1263 374 291 43 0 chr5 88868463 88868604 -63668655 + Lx7 LINE L1 6928 7074 -622 3 1263 491 170 11 0 chr5 88868601 88868695 -63668564 - L1_Mur3 LINE L1 -1869 4011 3917 3 1263 910 143 84 0 chr5 88868701 88868855 -63668404 - RLTR17 LTR ERVK -324 368 202 3 1263 867 183 135 0 chr5 88868855 88869085 -63668174 - L1_Mur3 LINE L1 -1951 3929 3669 3 1263 6083 86 57 2 chr5 88869087 88870622 -63666637 + L1VL2 LINE L1 191 1826 -1789 3 1263 346 281 0 0 chr5 88870764 88870853 -63666406 - PB1D10 SINE Alu -2 115 27 3 1263 3243 228 116 110 chr5 88871599 88872321 -63664938 - L1_Mur3 LINE L1 -2198 3679 2903 3 1263 354 23 0 0 chr5 88872321 88872364 -63664895 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 3 1263 788 175 29 14 chr5 88872367 88872506 -63664753 - B1_Mur4 SINE Alu -7 143 3 3 1263 3361 186 82 45 chr5 88872506 88873347 -63663912 - L1_Mur3 LINE L1 -2975 2899 1964 3 1263 4782 121 13 16 chr5 88873352 88874761 -63662498 + L1Md_A LINE L1 387 1790 -4093 3 1263 16420 48 59 57 chr5 88874755 88876486 -63660773 + L1Md_A LINE L1 3061 4892 -991 3 1263 257 281 37 59 chr5 88876486 88876622 -63660637 - MER72B LTR ERV1 -356 412 280 3 1263 16420 48 59 57 chr5 88876622 88877276 -63659983 + L1Md_A LINE L1 4893 5586 -297 3 1263 7959 46 6 0 chr5 88877277 88878252 -63659007 + L1Md_F3 LINE L1 5588 6568 -16 3 1263 1357 60 39 0 chr5 88878262 88878444 -63658815 + L1Md_F2 LINE L1 6382 6570 -12 3 1263 180 0 0 0 chr5 88878456 88878476 -63658783 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1263 1386 62 21 0 chr5 88878476 88878670 -63658589 + L1Md_F3 LINE L1 6381 6578 -6 4 1263 5342 190 50 21 chr5 88878677 88880351 -63656908 + Lx7 LINE L1 4619 6334 -1362 4 1263 5668 212 77 11 chr5 88880589 88881889 -63655370 + Lx7 LINE L1 6308 7692 -4 4 1263 1067 257 34 32 chr5 88881892 88882330 -63654929 + Lx9 LINE L1 2901 3339 -2508 4 1263 281 191 106 0 chr5 88882341 88882435 -63654824 + Lx9 LINE L1 7412 7515 -129 4 1263 403 265 20 10 chr5 88882560 88882659 -63654600 + PB1D9 SINE Alu 19 118 -2 4 1263 958 71 0 0 chr5 88882662 88882788 -63654471 + B1_Mus2 SINE Alu 20 145 -2 4 1263 605 14 14 0 chr5 88882788 88882862 -63654397 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 4 1263 1257 258 96 19 chr5 88882866 88883441 -63653818 + Lx9 LINE L1 5332 5991 -1653 4 1263 1170 271 51 61 chr5 88883503 88883633 -63653626 - Lx8 LINE L1 -820 6653 6536 4 1263 207 0 0 0 chr5 88883633 88883656 -63653603 + (TGG)n Simple_repeat Simple_repeat 1 23 0 4 1263 1170 271 51 61 chr5 88883656 88883954 -63653305 - Lx8 LINE L1 -938 6535 6229 4 1263 368 285 71 33 chr5 88887258 88887386 -63649873 + B1F SINE Alu 11 144 -5 4 1263 641 251 45 60 chr5 88887649 88887848 -63649411 - B3A SINE B2 -1 197 2 4 1263 261 0 0 0 chr5 88888467 88888496 -63648763 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1263 180 0 0 0 chr5 88888710 88888730 -63648529 + (TAA)n Simple_repeat Simple_repeat 1 20 0 4 1263 208 0 62 0 chr5 88888730 88888762 -63648497 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1263 227 275 0 55 chr5 88889197 88889214 -63648045 + B4A SINE B4 76 88 -204 4 1263 325 292 37 19 chr5 88889214 88889322 -63647937 + PB1D7 SINE Alu 3 112 -8 4 1263 318 167 0 0 chr5 88889322 88889382 -63647877 + GA-rich Low_complexity Low_complexity 1 60 0 4 1263 1112 88 0 0 chr5 88889947 88890094 -63647165 + B1_Mm SINE Alu 1 147 0 4 1263 388 294 3 1 chr5 88890118 88890219 -63647040 + B1F1 SINE Alu 2 103 -46 4 1263 229 205 43 98 chr5 88890277 88890369 -63646890 + B1F SINE Alu 31 117 0 4 1263 24 32 0 0 chr5 88890918 88890949 -63646310 + AT_rich Low_complexity Low_complexity 1 31 0 4 1263 722 196 67 0 chr5 88891739 88891918 -63645341 - Lx5 LINE L1 0 7050 6860 4 1263 605 210 35 21 chr5 88893014 88893155 -63644104 + B1_Mur3 SINE Alu 2 144 -5 4 1263 205 336 68 42 chr5 88893160 88893278 -63643981 - MIRb SINE MIR -125 143 23 4 1263 659 62 0 152 chr5 88893740 88893872 -63643387 - L1_Mus3 LINE L1 -747 5891 5780 4 1263 1623 59 14 0 chr5 88893874 88894094 -63643165 + L1_Mus2 LINE L1 6344 6566 0 4 1263 390 236 37 28 chr5 88894945 88895054 -63642205 + PB1D10 SINE Alu 1 110 -7 4 1263 719 41 91 0 chr5 88895465 88895586 -63641673 + (GGAAA)n Simple_repeat Simple_repeat 4 135 0 4 1263 310 293 110 35 chr5 88895586 88895731 -63641528 + HAL1-3A_ME LINE L1 2284 2439 -419 4 1263 3073 33 3 0 chr5 88895871 88896238 -63641021 - L1Md_F2 LINE L1 0 6582 6215 4 1263 22 56 0 0 chr5 88897463 88897499 -63639760 + AT_rich Low_complexity Low_complexity 1 36 0 4 1263 766 244 6 6 chr5 88897913 88898074 -63639185 + RSINE1 SINE B4 3 163 -2 4 1263 280 302 104 0 chr5 88899661 88899757 -63637502 - MER94 DNA AcHobo -20 114 9 4 1263 23 0 0 0 chr5 88899809 88899832 -63637427 + AT_rich Low_complexity Low_complexity 1 23 0 4 1263 2529 202 46 72 chr5 88901394 88902087 -63635172 - Lx9 LINE L1 -11 7633 6959 4 1263 236 280 54 85 chr5 88902818 88902947 -63634312 - Charlie4z DNA MER1_type -36 131 7 4 1263 343 287 26 77 chr5 88903144 88903261 -63633998 + PB1D7 SINE Alu 10 120 0 4 1263 349 42 0 0 chr5 88903264 88903312 -63633947 + L1Md_F2 LINE L1 6521 6568 -14 4 1263 486 0 0 0 chr5 88903313 88903367 -63633892 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1263 207 216 0 0 chr5 88904016 88904053 -63633206 + A-rich Low_complexity Low_complexity 1 37 0 4 1263 242 143 20 0 chr5 88904053 88904102 -63633157 + G-rich Low_complexity Low_complexity 2 51 0 4 1263 190 329 68 0 chr5 88904407 88904480 -63632779 - L2a LINE L2 -5 3421 3344 4 1263 903 91 8 15 chr5 88904480 88904601 -63632658 + B1_Mus1 SINE Alu 16 136 -12 4 1263 699 81 0 0 chr5 88904601 88904700 -63632559 + (GAA)n Simple_repeat Simple_repeat 2 100 0 4 1263 903 91 8 15 chr5 88904700 88904712 -63632547 + B1_Mus1 SINE Alu 137 148 0 4 1263 215 224 209 27 chr5 88905148 88905258 -63632001 + MIR SINE MIR 53 182 -80 4 1263 319 309 93 9 chr5 88905266 88905374 -63631885 + ID_B1 SINE B4 108 224 0 4 1263 456 167 8 26 chr5 88905386 88905401 -63631858 + polypurine Low_complexity Low_complexity 1 15 0 4 1263 1151 18 49 9 chr5 88905401 88905577 -63631682 + (GGA)n Simple_repeat Simple_repeat 1 185 -180 4 1263 1151 18 49 9 chr5 88905582 88905752 -63631507 + (GGA)n Simple_repeat Simple_repeat 186 365 0 4 1263 456 167 8 26 chr5 88905752 88905801 -63631458 + polypurine Low_complexity Low_complexity 21 67 0 4 1263 1040 57 22 33 chr5 88905801 88905982 -63631277 + (GGA)n Simple_repeat Simple_repeat 2 180 0 4 1263 456 167 8 26 chr5 88905982 88906027 -63631232 + polypurine Low_complexity Low_complexity 68 113 0 4 1263 750 190 43 21 chr5 88906117 88906257 -63631002 + B1_Mur3 SINE Alu 6 148 -1 4 1263 183 156 0 0 chr5 88906294 88906326 -63630933 + (CTTTG)n Simple_repeat Simple_repeat 1 32 0 4 1263 668 274 0 7 chr5 88906326 88906473 -63630786 - B1_Mur1 SINE Alu -1 148 3 4 1263 2363 278 49 40 chr5 88907505 88908570 -63628689 - Lx9 LINE L1 -155 7489 6390 4 1263 432 0 0 0 chr5 88908584 88908632 -63628627 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1263 434 313 0 12 chr5 88908867 88908974 -63628285 + B1_Mur2 SINE Alu 5 108 -12 4 1263 599 26 13 0 chr5 88908976 88909053 -63628206 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 4 1263 243 88 0 0 chr5 88909065 88909099 -63628160 + (TATG)n Simple_repeat Simple_repeat 3 36 0 4 1263 557 307 278 7 chr5 88909161 88909702 -63627557 - L2a LINE L2 -13 3413 2726 4 1263 439 269 227 28 chr5 88910032 88910165 -63627094 + B3 SINE B2 4 169 -47 4 1263 288 0 0 0 chr5 88910165 88910197 -63627062 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1263 439 269 227 28 chr5 88910197 88910239 -63627020 + B3 SINE B2 170 214 -2 4 1263 681 13 0 0 chr5 88911218 88911296 -63625963 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 1263 234 301 74 46 chr5 88911319 88911427 -63625832 + MIR SINE MIR 124 234 -28 4 1263 515 289 11 55 chr5 88911670 88911853 -63625406 + Arthur1B DNA Tip100 273 447 -778 4 1263 21 82 0 0 chr5 88912924 88912973 -63624286 + AT_rich Low_complexity Low_complexity 1 49 0 4 1263 248 330 9 28 chr5 88913018 88913124 -63624135 - MIRb SINE MIR -109 159 56 4 1263 225 197 26 13 chr5 88913271 88913348 -63623911 + CT-rich Low_complexity Low_complexity 3 80 0 4 1263 819 203 0 0 chr5 88913843 88913991 -63623268 + B1_Mur2 SINE Alu 1 148 -1 4 1263 1033 118 55 17 chr5 88914545 88914726 -63622533 + B2_Mm2 SINE B2 2 189 -6 4 1263 4106 186 37 0 chr5 88915323 88916055 -63621204 + Lx5 LINE L1 6285 7043 -7 4 1263 312 148 3 79 chr5 88919128 88919207 -63618052 - B1_Mur2 SINE Alu 0 149 43 4 1263 235 210 274 0 chr5 88919320 88919382 -63617877 - B1_Mur2 SINE Alu -54 95 17 4 1263 468 312 116 58 chr5 88919539 88919815 -63617444 + B4 SINE B4 1 292 0 4 1263 837 236 54 20 chr5 88919834 88920037 -63617222 + B3 SINE B2 1 210 -6 4 1263 22 80 0 0 chr5 88920086 88920136 -63617123 + AT_rich Low_complexity Low_complexity 1 50 0 4 1263 776 0 10 0 chr5 88920758 88920885 -63616374 + L1Md_A LINE L1 6474 6582 0 4 1263 238 229 0 28 chr5 88921141 88921213 -63616046 + (GTTTG)n Simple_repeat Simple_repeat 2 71 0 4 1263 464 293 80 90 chr5 88921379 88921405 -63615854 - B4 SINE B4 -4 288 266 4 1263 297 0 0 0 chr5 88921405 88921438 -63615821 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1263 464 293 80 90 chr5 88921438 88921700 -63615559 - B4 SINE B4 -27 265 3 4 1263 237 333 49 0 chr5 88922441 88922453 -63614806 + ID SINE ID 70 86 -138 4 1263 312 304 44 9 chr5 88922453 88922566 -63614693 + PB1D10 SINE Alu 1 117 0 4 1263 262 287 128 10 chr5 88922697 88922799 -63614460 + MIRb SINE MIR 47 160 -108 4 1263 203 283 0 0 chr5 88922901 88922947 -63614312 + GA-rich Low_complexity Low_complexity 3 48 0 4 1263 1141 181 18 0 chr5 88923617 88923838 -63613421 - URR1B DNA MER1_type 0 225 1 4 1263 207 0 0 0 chr5 88923912 88923935 -63613324 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 4 1263 1008 239 41 51 chr5 88924273 88924568 -63612691 - B4A SINE B4 0 292 1 4 1263 288 115 0 0 chr5 88924604 88924645 -63612614 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1263 1209 48 7 0 chr5 88924645 88924791 -63612468 - B1_Mus2 SINE Alu 0 147 1 4 1263 288 115 0 0 chr5 88924791 88924801 -63612458 + (T)n Simple_repeat Simple_repeat 1 10 0 4 1263 879 34 134 0 chr5 88924905 88925024 -63612235 - L1_Mus2 LINE L1 0 6566 6432 4 1263 602 176 124 16 chr5 88925287 88925408 -63611851 + B1_Mus1 SINE Alu 1 134 -14 4 1263 468 0 0 0 chr5 88925408 88925460 -63611799 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 4 1263 1539 303 53 22 chr5 88925526 88926622 -63610637 - L1M2 LINE L1 -641 5650 4516 4 1263 206 283 19 0 chr5 88926774 88926827 -63610432 + CT-rich Low_complexity Low_complexity 1 54 0 4 1263 1010 213 143 16 chr5 88927041 88927299 -63609960 + B4A SINE B4 2 292 0 4 1263 527 196 7 0 chr5 88927302 88927450 -63609809 + (CA)n Simple_repeat Simple_repeat 2 150 0 4 1263 443 289 109 0 chr5 88927455 88927583 -63609676 + B1F SINE Alu 1 142 -7 4 1263 304 331 70 21 chr5 88927458 88927600 -63609659 + B4A SINE B4 88 236 -56 4 1263 292 233 110 0 chr5 88928635 88928708 -63608551 + ID4_ SINE ID 3 83 0 4 1263 625 281 0 7 chr5 88929975 88930111 -63607148 + B1F2 SINE Alu 8 142 -7 5 1263 296 343 9 36 chr5 88930153 88930265 -63606994 + PB1D7 SINE Alu 5 113 -7 5 1263 188 35 35 0 chr5 88936061 88936090 -63601169 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5 1263 345 24 0 0 chr5 88936945 88936987 -63600272 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 5 1263 666 186 49 21 chr5 88937025 88937168 -63600091 - B1_Mur3 SINE Alu 0 149 3 5 1263 3050 69 8 2 chr5 88937292 88937686 -63599573 + MTA_Mm LTR MaLR 1 396 0 5 1263 14347 68 2 3 chr5 88938626 88941276 -63595983 - L1Md_F2 LINE L1 -12 6570 3926 5 1263 626 243 7 14 chr5 88941624 88941766 -63595493 + RSINE1 SINE B4 3 143 -22 5 1263 375 23 0 0 chr5 88941775 88941819 -63595440 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1263 1742 211 132 9 chr5 88941838 88942369 -63594890 + L1_Rod LINE L1 1342 1937 -3910 5 1263 980 274 129 11 chr5 88942377 88942727 -63594532 + RMER1A Other Other 167 557 -473 5 1263 788 253 0 0 chr5 88942747 88942901 -63594358 - MTC LTR MaLR -8 413 260 5 1263 1228 204 48 9 chr5 88942901 88943237 -63594022 + L1_Rod LINE L1 3141 3489 -2358 5 1263 191 170 0 21 chr5 88943239 88943287 -63593972 + GA-rich Low_complexity Low_complexity 1 47 0 5 1263 2009 181 254 10 chr5 88943316 88943796 -63593463 - MTC-int LTR MaLR -309 949 353 5 1263 403 129 58 29 chr5 88943805 88943909 -63593350 - MTC-int LTR MaLR -1150 108 2 5 1263 1652 194 22 3 chr5 88943908 88944228 -63593031 - MTC LTR MaLR 0 421 96 5 1263 720 214 25 3 chr5 88944222 88944395 -63592864 - B3 SINE B2 -4 189 2 5 1263 573 133 0 30 chr5 88944395 88944494 -63592765 - MTC LTR MaLR -325 96 1 5 1263 1568 108 66 11 chr5 88944552 88944824 -63592435 + ORR1A4 LTR MaLR 1 287 -42 5 1263 1206 61 0 0 chr5 88944824 88944971 -63592288 + B1_Mus1 SINE Alu 2 148 0 5 1263 1562 209 111 91 chr5 88945037 88945557 -63591702 + L1_Rod LINE L1 5259 5787 -60 5 1263 739 268 20 44 chr5 88945557 88945760 -63591499 - B3A SINE B2 0 198 1 5 1263 1562 209 111 91 chr5 88945760 88945780 -63591479 + L1_Rod LINE L1 5788 5810 -37 5 1263 3977 268 68 50 chr5 88945787 88946314 -63590945 - MTE-int LTR MaLR -224 1356 819 5 1263 1217 61 0 0 chr5 88946314 88946461 -63590798 + B1_Mus1 SINE Alu 2 148 0 5 1263 3977 268 68 50 chr5 88946461 88946799 -63590460 - MTE-int LTR MaLR -762 818 458 5 1263 1303 98 11 16 chr5 88946799 88946986 -63590273 - B2_Mm1t SINE B2 -6 187 2 5 1263 3977 268 68 50 chr5 88946986 88947298 -63589961 - MTE-int LTR MaLR -1123 457 157 5 1263 1470 155 126 14 chr5 88947298 88947592 -63589667 + ORR1A4 LTR MaLR 3 329 0 5 1263 3977 268 68 50 chr5 88947592 88947743 -63589516 - MTE-int LTR MaLR -1424 156 2 5 1263 475 214 19 19 chr5 88947840 88947945 -63589314 - MTEb LTR MaLR -151 228 124 5 1263 674 174 80 43 chr5 88948032 88948170 -63589089 + B1_Mur4 SINE Alu 2 144 -6 5 1263 250 304 101 0 chr5 88948177 88948256 -63589003 - MTEb LTR MaLR -45 334 248 5 1263 344 304 17 17 chr5 88948505 88948622 -63588637 + MER5A DNA MER1_type 36 152 -37 5 1263 288 0 0 0 chr5 88948799 88948831 -63588428 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 5 1263 840 10 0 0 chr5 88949225 88949322 -63587937 + (CTTTG)n Simple_repeat Simple_repeat 3 99 0 5 1263 308 263 0 38 chr5 88949325 88949404 -63587855 - ID4_ SINE ID -4 79 4 5 1263 252 192 12 19 chr5 88950925 88951005 -63586254 - B1F SINE Alu -12 137 27 5 1263 691 228 0 0 chr5 88951038 88951174 -63586085 - B1_Mus2 SINE Alu -9 138 3 5 1263 254 127 0 98 chr5 88951896 88951957 -63585302 - B3 SINE B2 -1 215 161 5 1263 274 314 12 0 chr5 88952161 88952247 -63585012 - PB1D10 SINE Alu -30 87 1 5 1263 681 232 56 37 chr5 88952410 88952571 -63584688 - RSINE1 SINE B4 0 165 2 5 1263 414 0 0 0 chr5 88952671 88952717 -63584542 + (TA)n Simple_repeat Simple_repeat 1 46 0 5 1263 1184 150 6 0 chr5 88953140 88953320 -63583939 + Lx2B LINE L1 6462 6642 -358 5 1263 465 243 125 34 chr5 88953305 88953517 -63583742 + Lx3C LINE L1 6733 7058 0 5 1263 344 145 58 0 chr5 88953565 88953634 -63583625 + Lx3B LINE L1 6900 6972 -1 5 1263 23 33 0 0 chr5 88953696 88953726 -63583533 + AT_rich Low_complexity Low_complexity 1 30 0 5 1263 391 293 26 0 chr5 88955316 88955432 -63581827 + B1F SINE Alu 18 136 -13 5 1263 622 244 8 0 chr5 88955501 88955628 -63581631 - ID_B1 SINE B4 -13 211 84 5 1263 306 0 0 0 chr5 88956580 88956614 -63580645 + (TA)n Simple_repeat Simple_repeat 2 35 0 5 1263 440 62 16 0 chr5 88957530 88957594 -63579665 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1263 1250 197 5 0 chr5 88957864 88958072 -63579187 + B3 SINE B2 1 209 -7 5 1263 433 245 10 0 chr5 88958557 88958655 -63578604 + ID_B1 SINE B4 114 212 -12 5 1263 249 361 76 27 chr5 88959054 88959219 -63578040 - L3 LINE CR1 -767 3722 3549 5 1263 1398 89 16 5 chr5 88959219 88959411 -63577848 + B2_Mm2 SINE B2 1 194 -1 5 1263 249 361 76 27 chr5 88959411 88959430 -63577829 - L3 LINE CR1 -941 3548 3530 5 1263 809 86 6 64 chr5 88959439 88959612 -63577647 + G-rich Low_complexity Low_complexity 4 166 0 5 1263 252 122 0 0 chr5 88959626 88959667 -63577592 + (CAGG)n Simple_repeat Simple_repeat 2 42 0 5 1263 310 227 171 9 chr5 88959873 88959984 -63577275 - B1F SINE Alu -20 129 1 5 1263 1015 238 29 0 chr5 88960435 88960645 -63576614 + B3 SINE B2 1 216 0 5 1263 427 304 0 0 chr5 88961392 88961504 -63575755 + PB1D7 SINE Alu 1 112 -8 5 1263 354 301 18 9 chr5 88962073 88962187 -63575072 - MLT1E2 LTR MaLR -163 464 350 5 1263 314 336 33 113 chr5 88962250 88962362 -63574897 - B3A SINE B2 -56 142 40 5 1263 1514 119 25 4 chr5 88962362 88962607 -63574652 - L1_Mus3 LINE L1 0 6638 6389 5 1263 314 336 33 113 chr5 88962607 88962645 -63574614 - B3A SINE B2 -159 39 4 5 1263 365 265 149 35 chr5 88962914 88963055 -63574204 - RSINE1 SINE B4 -6 159 3 5 1263 446 262 94 16 chr5 88963097 88963225 -63574034 + ID_B1 SINE B4 87 224 0 5 1263 484 289 8 0 chr5 88963288 88963409 -63573850 - ID_B1 SINE B4 -6 218 97 5 1263 361 331 51 7 chr5 88963409 88963425 -63573834 - B1F2 SINE Alu -6 143 1 5 1263 298 252 17 0 chr5 88964619 88964734 -63572525 + (CA)n Simple_repeat Simple_repeat 2 118 0 5 1263 466 287 17 0 chr5 88964795 88964910 -63572349 + B1F SINE Alu 14 130 -19 5 1263 1048 125 175 10 chr5 88964915 88965109 -63572150 + URR1A DNA MER1_type 1 226 0 5 1263 1227 41 0 0 chr5 88965138 88965284 -63571975 + B1_Mm SINE Alu 1 146 -1 5 1263 956 138 0 12 chr5 88965288 88965456 -63571803 + GA-rich Low_complexity Low_complexity 3 168 0 5 1263 814 239 86 34 chr5 88965629 88965898 -63571361 + B4 SINE B4 2 284 -8 5 1263 1260 162 24 40 chr5 88965919 88966144 -63571115 - RMER3D-int LTR ERVK -1386 1456 1231 5 1263 3162 63 2 5 chr5 88966144 88966541 -63570718 - MTA_Mm LTR MaLR 0 396 1 5 1263 1260 162 24 40 chr5 88966541 88966565 -63570694 - RMER3D-int LTR ERVK -1612 1230 1211 5 1263 1229 210 110 39 chr5 88966684 88967028 -63570231 + RLTR20A LTR ERVK 74 450 -91 5 1263 378 0 0 0 chr5 88967028 88967070 -63570189 + (TC)n Simple_repeat Simple_repeat 2 43 0 5 1263 426 20 0 0 chr5 88967070 88967120 -63570139 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1263 1229 210 110 39 chr5 88967120 88967211 -63570048 + RLTR20A LTR ERVK 451 539 -2 5 1263 4327 44 0 0 chr5 88967416 88967920 -63569339 + L1_Mus1 LINE L1 6064 6567 0 5 1263 26 0 0 0 chr5 88968904 88968930 -63568329 + AT_rich Low_complexity Low_complexity 1 26 0 5 1263 320 333 107 8 chr5 88968948 88969069 -63568190 - RSINE1 SINE B4 -29 136 4 5 1263 278 253 80 0 chr5 88969089 88969164 -63568095 + ID4 SINE ID 3 83 0 5 1263 189 107 0 0 chr5 88969225 88969253 -63568006 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1263 394 301 203 23 chr5 88969686 88969863 -63567396 + ID_B1 SINE B4 15 223 -1 5 1263 243 0 0 0 chr5 88969991 88970018 -63567241 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1263 21 36 0 0 chr5 88970414 88970442 -63566817 + AT_rich Low_complexity Low_complexity 1 28 0 5 1263 282 358 30 0 chr5 88970451 88970560 -63566699 + B1F1 SINE Alu 2 112 -5 5 1263 414 273 38 0 chr5 88970570 88970702 -63566557 + ID_B1 SINE B4 86 222 -2 5 1263 619 260 6 27 chr5 88970748 88970924 -63566335 + B3 SINE B2 29 194 -1 5 1263 216 224 207 0 chr5 88971262 88971320 -63565939 + RSINE1 SINE B4 2 71 -94 5 1263 789 31 0 0 chr5 88971332 88971428 -63565831 + (CA)n Simple_repeat Simple_repeat 1 96 0 5 1263 326 286 24 48 chr5 88971564 88971689 -63565570 - B1F SINE Alu -5 144 23 5 1263 1288 78 67 0 chr5 88972035 88972214 -63565045 + B2_Mm2 SINE B2 5 195 0 5 1263 616 194 39 8 chr5 88972314 88972444 -63564815 + B1_Mur3 SINE Alu 10 143 -6 5 1263 659 99 10 0 chr5 88973090 88973191 -63564068 + (GAAA)n Simple_repeat Simple_repeat 2 103 0 5 1263 1158 70 6 0 chr5 88973200 88973358 -63563901 + B2_Mm1a SINE B2 2 160 -33 5 1263 396 0 0 0 chr5 88973358 88973402 -63563857 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 5 1263 364 216 0 143 chr5 88974596 88974715 -63562544 - 7SK RNA RNA -93 238 137 5 1263 342 0 0 0 chr5 88974817 88974855 -63562404 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1263 36158 36 1 0 chr5 88974907 88981202 -63556057 + L1Md_T LINE L1 1 5589 -297 5 1263 9171 5 0 0 chr5 88981202 88982198 -63555061 + L1Md_T LINE L1 5590 6585 0 5 1263 272 178 46 18 chr5 88982444 88982553 -63554706 + CT-rich Low_complexity Low_complexity 4 115 0 5 1263 230 320 10 20 chr5 88982572 88982674 -63554585 + CT-rich Low_complexity Low_complexity 4 104 0 5 1263 197 33 0 32 chr5 88983063 88983094 -63554165 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1263 216 205 0 0 chr5 88984080 88984119 -63553140 + GA-rich Low_complexity Low_complexity 2 40 0 5 1263 264 200 41 41 chr5 88985219 88985292 -63551967 - ID4_ SINE ID -9 74 2 5 1263 452 322 142 5 chr5 88985856 88986068 -63551191 + B4A SINE B4 10 250 -42 5 1263 328 292 36 2 chr5 88986108 88986240 -63551019 - MIR SINE MIR -110 158 22 5 1263 195 359 36 36 chr5 88986349 88986459 -63550800 + MIR SINE MIR 41 150 -112 5 1263 1211 35 0 14 chr5 88986608 88986754 -63550505 - B1_Mm SINE Alu -2 145 2 5 1263 261 320 68 0 chr5 88986832 88986935 -63550324 + MIR SINE MIR 144 253 -9 5 1263 190 135 27 0 chr5 88987022 88987059 -63550200 + MER5A DNA MER1_type 130 167 -22 6 1263 313 327 62 0 chr5 88987420 88987533 -63549726 + B4A SINE B4 75 194 -98 6 1263 719 200 0 7 chr5 88987437 88987578 -63549681 + B1_Mus2 SINE Alu 8 147 0 6 1263 976 24 8 0 chr5 88987633 88987758 -63549501 - B1_Mus1 SINE Alu 0 148 23 6 1263 244 256 83 24 chr5 88988549 88988633 -63548626 + B1F SINE Alu 47 135 -14 6 1263 386 179 7 48 chr5 88988779 88988872 -63548387 + B1_Mur2 SINE Alu 49 143 -6 6 1263 8840 108 90 10 chr5 88988987 88990476 -63546783 + Lx4A LINE L1 5472 7051 -7 6 1263 293 127 0 53 chr5 88991626 88991654 -63545605 + A-rich Low_complexity Low_complexity 1 25 0 6 1263 1230 20 0 20 chr5 88991654 88991804 -63545455 + B1_Mm SINE Alu 1 147 0 6 1263 293 127 0 53 chr5 88991804 88991850 -63545409 + A-rich Low_complexity Low_complexity 26 71 0 6 1263 1273 52 46 0 chr5 88991939 88992112 -63545147 + B2_Mm2 SINE B2 15 195 0 6 1263 227 220 16 63 chr5 88992140 88992203 -63545056 + PB1D10 SINE Alu 1 60 -57 6 1263 207 0 0 0 chr5 88992230 88992253 -63545006 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1263 473 254 161 36 chr5 88992253 88992445 -63544814 + B3 SINE B2 1 216 0 6 1263 373 221 50 39 chr5 88992543 88992671 -63544588 + B1_Mur1 SINE Alu 13 146 -3 6 1263 311 223 29 51 chr5 88993935 88994110 -63543149 + (CGGGG)n Simple_repeat Simple_repeat 5 175 0 6 1263 29 60 0 0 chr5 88994593 88994643 -63542616 + GC_rich Low_complexity Low_complexity 1 50 0 6 1263 27 49 0 0 chr5 88994722 88994763 -63542496 + GC_rich Low_complexity Low_complexity 1 41 0 6 1263 400 184 132 99 chr5 88996462 88996583 -63540676 - B1_Mur2 SINE Alu -12 137 13 6 1263 430 258 105 17 chr5 88996597 88996778 -63540481 - B3A SINE B2 0 198 2 6 1263 1257 47 0 0 chr5 88996906 88997054 -63540205 + B1_Mus1 SINE Alu 1 148 0 6 1263 756 206 14 23 chr5 88997180 88997379 -63539880 - B3 SINE B2 -1 194 1 6 1263 367 283 0 34 chr5 88997483 88997600 -63539659 - PB1D10 SINE Alu 0 117 5 6 1263 361 310 70 0 chr5 88997722 88997864 -63539395 - ID_B1 SINE B4 -6 218 67 6 1264 842 118 0 16 chr5 88998116 88998237 -63539022 - PB1D9 SINE Alu -1 119 1 6 1264 652 270 96 50 chr5 88998648 88998991 -63538268 + MTE2a LTR MaLR 5 363 -16 6 1264 391 250 149 7 chr5 88999005 88999146 -63538113 - RSINE1 SINE B4 -1 164 4 6 1264 337 263 0 0 chr5 88999191 88999267 -63537992 - RMER30 DNA MER1_type -119 83 8 6 1264 478 150 0 0 chr5 88999318 88999398 -63537861 - B1_Mus2 SINE Alu -56 91 12 6 1264 1755 134 89 51 chr5 88999653 88999967 -63537292 - ORR1A2 LTR MaLR 0 327 2 6 1264 318 50 0 0 chr5 89000112 89000152 -63537107 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1264 853 218 96 10 chr5 89000223 89000422 -63536837 - B3 SINE B2 0 216 1 2 1264 349 217 54 54 chr5 89000651 89000763 -63536496 - PB1D10 SINE Alu -5 112 1 3 1264 223 216 0 38 chr5 89001191 89001244 -63536015 + CT-rich Low_complexity Low_complexity 4 54 0 4 1264 1218 61 0 0 chr5 89001304 89001451 -63535808 - B1_Mus1 SINE Alu 0 148 2 5 1264 379 106 161 23 chr5 89001591 89001678 -63535581 - PB1D9 SINE Alu -21 99 1 6 1264 250 246 15 0 chr5 89001879 89001944 -63535315 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 7 1264 394 143 29 0 chr5 89002762 89002832 -63534427 + PB1D9 SINE Alu 43 114 -6 8 1264 180 111 0 0 chr5 89003060 89003087 -63534172 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 9 1264 193 77 50 25 chr5 89003139 89003179 -63534080 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1 1264 222 267 39 26 chr5 89003330 89003407 -63533852 + PB1D10 SINE Alu 33 110 -7 1 1264 757 204 7 0 chr5 89003437 89003574 -63533685 - B1_Mus1 SINE Alu -10 138 1 1 1264 1150 75 0 14 chr5 89003593 89003741 -63533518 - B1_Mus2 SINE Alu -1 146 1 1 1264 192 318 15 0 chr5 89003975 89004041 -63533218 - MIRb SINE MIR -93 175 109 1 1264 462 296 47 0 chr5 89004706 89004878 -63532381 + ID_B1 SINE B4 38 217 -7 1 1264 1054 243 62 4 chr5 89004896 89005156 -63532103 + B4 SINE B4 5 279 -13 1 1264 402 226 176 4 chr5 89005167 89005330 -63531929 + B4 SINE B4 2 210 -82 1 1264 261 0 0 0 chr5 89005349 89005378 -63531881 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1264 1193 48 0 0 chr5 89005440 89005587 -63531672 - B1_Mus2 SINE Alu 0 147 1 1 1264 333 0 0 0 chr5 89005623 89005660 -63531599 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 2 1264 708 239 15 25 chr5 89005809 89006011 -63531248 + B3 SINE B2 1 200 -16 2 1264 3077 71 10 0 chr5 89006011 89006407 -63530852 - MTB LTR MaLR 0 400 1 2 1264 7851 74 10 70 chr5 89006407 89007575 -63529684 - MTB-int LTR MaLR 0 1098 1 2 1264 2669 73 31 18 chr5 89007575 89007750 -63529509 - MTB LTR MaLR 0 396 223 2 1264 517 70 0 34 chr5 89007750 89007839 -63529420 + (CTTG)n Simple_repeat Simple_repeat 2 87 0 2 1264 2669 73 31 18 chr5 89007839 89007859 -63529400 - MTB LTR MaLR -174 222 194 2 1264 1109 37 22 0 chr5 89007859 89007995 -63529264 - B1_Mus1 SINE Alu -7 141 3 2 1264 2669 73 31 18 chr5 89007995 89008189 -63529070 - MTB LTR MaLR -203 193 2 2 1264 688 167 7 53 chr5 89008431 89008583 -63528676 - B1_Mur4 SINE Alu 0 150 6 2 1264 243 0 0 0 chr5 89009085 89009112 -63528147 + (GGGTG)n Simple_repeat Simple_repeat 4 30 0 2 1264 540 323 87 9 chr5 89010193 89010424 -63526835 + Tigger7 DNA MER2_type 11 259 -2232 2 1264 765 266 111 0 chr5 89010566 89010810 -63526449 - B4 SINE B4 -18 274 4 2 1264 806 258 13 48 chr5 89010823 89011051 -63526208 + ID_B1 SINE B4 1 220 -4 2 1264 519 122 202 18 chr5 89011145 89011254 -63526005 - B1_Mur3 SINE Alu -2 147 19 3 1264 335 248 289 0 chr5 89011264 89011385 -63525874 + Tigger7 DNA MER2_type 2332 2487 -4 2 1264 270 190 0 121 chr5 89011505 89011571 -63525688 - ID_B1 SINE B4 -7 217 160 3 1264 1163 49 0 27 chr5 89011938 89012085 -63525174 + B1_Mus1 SINE Alu 1 143 -5 3 1264 180 182 0 0 chr5 89012982 89013026 -63524233 + T-rich Low_complexity Low_complexity 1 44 0 3 1264 405 0 0 0 chr5 89013098 89013143 -63524116 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1264 231 36 0 0 chr5 89016263 89016291 -63520968 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1264 487 225 18 9 chr5 89016333 89016445 -63520814 + B3 SINE B2 2 114 -102 3 1264 353 204 120 35 chr5 89017607 89017749 -63519510 + B4A SINE B4 2 155 -137 3 1264 227 209 0 0 chr5 89017835 89017878 -63519381 - B1_Mur1 SINE Alu -8 141 99 3 1264 186 43 0 0 chr5 89018502 89018525 -63518734 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1264 570 138 0 11 chr5 89018526 89018621 -63518638 - B1_Mm SINE Alu -13 134 41 4 1264 596 200 0 35 chr5 89018802 89018916 -63518343 - B3 SINE B2 -75 141 32 4 1264 735 247 17 11 chr5 89019009 89019223 -63518036 - B3A SINE B2 -6 210 1 4 1264 225 0 0 0 chr5 89019246 89019271 -63517988 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1264 352 289 42 121 chr5 89019426 89019666 -63517593 + Tigger7 DNA MER2_type 2271 2491 0 4 1264 1631 210 94 59 chr5 89020674 89021099 -63516160 - Lx5 LINE L1 0 7050 6611 4 1264 40 0 0 0 chr5 89021122 89021162 -63516097 + AT_rich Low_complexity Low_complexity 1 40 0 4 1264 569 296 23 17 chr5 89021164 89021339 -63515920 - B3A SINE B2 -22 176 1 4 1264 1218 29 0 0 chr5 89021522 89021661 -63515598 - B1_Mus2 SINE Alu -7 140 2 4 1264 724 256 12 18 chr5 89021674 89021841 -63515418 - B3 SINE B2 0 216 51 4 1264 315 307 140 12 chr5 89022154 89022282 -63514977 + B4A SINE B4 1 143 -149 5 1264 213 94 0 0 chr5 89022282 89022314 -63514945 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 5 1264 315 307 140 12 chr5 89022314 89022442 -63514817 + B4A SINE B4 144 290 -2 5 1264 582 82 0 0 chr5 89022493 89022578 -63514681 + (CA)n Simple_repeat Simple_repeat 2 86 0 5 1264 257 119 0 23 chr5 89023110 89023153 -63514106 - ID_B1 SINE B4 -84 140 99 5 1264 203 240 0 0 chr5 89023205 89023255 -63514004 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1264 189 107 0 0 chr5 89023324 89023352 -63513907 + (GGGTG)n Simple_repeat Simple_repeat 1 28 0 5 1264 496 274 56 50 chr5 89024101 89024262 -63512997 + RSINE1 SINE B4 4 165 0 5 1264 29 0 0 0 chr5 89024441 89024470 -63512789 + AT_rich Low_complexity Low_complexity 1 29 0 5 1264 1191 41 0 20 chr5 89024479 89024628 -63512631 + B1_Mm SINE Alu 2 147 0 5 1264 710 156 90 0 chr5 89024875 89024997 -63512262 - B1_Mus2 SINE Alu -13 134 2 5 1264 1136 271 76 13 chr5 89025055 89025436 -63511823 - MTD LTR MaLR -14 405 1 6 1264 371 180 183 39 chr5 89025659 89025763 -63511496 + PB1D9 SINE Alu 2 120 0 6 1264 418 243 7 95 chr5 89025972 89026127 -63511132 + B1F SINE Alu 1 134 -15 6 1264 616 219 62 45 chr5 89026554 89026731 -63510528 + B3A SINE B2 3 182 -16 6 1264 180 0 0 0 chr5 89027040 89027060 -63510199 + (TTA)n Simple_repeat Simple_repeat 2 21 0 6 1264 562 306 39 15 chr5 89027985 89028244 -63509015 - L1MB7 LINE L1 0 6184 5920 6 1264 515 43 14 0 chr5 89028441 89028511 -63508748 + (TG)n Simple_repeat Simple_repeat 2 72 0 6 1264 408 235 178 20 chr5 89028521 89028673 -63508586 - B3 SINE B2 -39 177 2 6 1264 345 233 44 0 chr5 89028683 89028773 -63508486 - L1M4 LINE L1 -573 5598 5505 6 1264 644 228 32 28 chr5 89028799 89028960 -63508299 - B3 SINE B2 -1 215 70 6 1264 387 148 11 22 chr5 89028984 89029074 -63508185 + CT-rich Low_complexity Low_complexity 3 91 0 7 1264 513 221 24 24 chr5 89029088 89029213 -63508046 - B1_Mur1 SINE Alu 0 149 25 7 1264 721 297 75 87 chr5 89029213 89029529 -63507730 - L1M4 LINE L1 -939 5207 4920 6 1264 332 284 167 43 chr5 89029529 89029691 -63507568 - B3A SINE B2 -16 182 1 7 1264 721 297 75 87 chr5 89029691 89030186 -63507073 - L1M4 LINE L1 -1227 4919 4406 6 1264 391 297 109 35 chr5 89030207 89030409 -63506850 - Tigger7 DNA MER2_type -13 2478 2262 7 1264 748 274 192 28 chr5 89030421 89030811 -63506448 - Tigger7 DNA MER2_type -2036 455 2 7 1264 781 270 123 20 chr5 89030811 89030965 -63506294 - L1M4 LINE L1 -1816 4330 4158 6 1264 486 0 0 0 chr5 89030965 89031019 -63506240 + (GTTTG)n Simple_repeat Simple_repeat 1 54 0 7 1264 884 260 219 20 chr5 89031019 89031764 -63505495 - L1M4 LINE L1 -1989 4157 3268 6 1264 372 252 36 27 chr5 89031814 89031924 -63505335 - MTEb LTR MaLR -55 324 214 7 1264 327 324 0 36 chr5 89031913 89032025 -63505234 - PB1D10 SINE Alu -9 108 1 7 1264 238 390 32 0 chr5 89032025 89032054 -63505205 - ID SINE ID -143 81 49 7 1264 233 130 18 36 chr5 89032191 89032247 -63505012 + (TTATA)n Simple_repeat Simple_repeat 4 58 0 7 1264 384 159 0 0 chr5 89033042 89033105 -63504154 + PB1D9 SINE Alu 6 68 -52 7 1264 273 284 12 36 chr5 89033108 89033192 -63504067 - ID4 SINE ID 0 83 2 8 1264 443 316 7 7 chr5 89033213 89033353 -63503906 - B1F SINE Alu 0 149 10 8 1264 767 180 0 7 chr5 89033639 89033779 -63503480 - B1_Mus2 SINE Alu -6 141 3 8 1264 539 262 61 45 chr5 89033779 89033909 -63503350 - B1_Mur1 SINE Alu -15 134 3 8 1264 1013 267 134 9 chr5 89033909 89034245 -63503014 - Lx8 LINE L1 -132 7341 6964 8 1264 300 271 11 8 chr5 89034501 89034609 -63502650 - L1_Rod LINE L1 -1 5879 5746 8 1264 38772 30 0 0 chr5 89034619 89041346 -63495913 - L1Md_T LINE L1 0 6585 1 8 1264 589 220 64 0 chr5 89041351 89041492 -63495767 - L1_Rod LINE L1 -90 5757 5608 8 1264 1046 181 34 48 chr5 89041531 89041740 -63495519 + B3 SINE B2 1 206 -10 8 1264 423 285 1 13 chr5 89041844 89041959 -63495300 + PB1D10 SINE Alu 1 111 -6 8 1264 540 269 86 27 chr5 89042416 89042603 -63494656 + B3 SINE B2 19 216 0 8 1264 327 198 15 0 chr5 89042837 89042914 -63494345 + B1F SINE Alu 10 87 -62 9 1264 1553 197 79 8 chr5 89043123 89043516 -63493743 - MTC LTR MaLR 0 421 1 9 1264 358 282 99 6 chr5 89043728 89043899 -63493360 - Charlie1a DNA MER1_type -1141 314 128 9 1264 729 188 14 14 chr5 89044251 89044397 -63492862 + B1_Mur1 SINE Alu 2 147 -2 9 1264 980 227 54 5 chr5 89044781 89044985 -63492274 - B3 SINE B2 -1 215 2 9 1264 479 245 194 21 chr5 89045146 89045388 -63491871 - B4A SINE B4 -6 286 3 9 1264 251 157 27 41 chr5 89046833 89046906 -63490353 + (CATA)n Simple_repeat Simple_repeat 1 72 0 9 1264 637 203 19 101 chr5 89046948 89047107 -63490152 - B1_Mur3 SINE Alu 0 149 4 9 1264 588 196 0 9 chr5 89047178 89047286 -63489973 + B1_Mur2 SINE Alu 2 108 -41 9 1264 255 122 0 0 chr5 89047287 89047336 -63489923 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1264 235 305 57 9 chr5 89047384 89047490 -63489769 + L1ME3B LINE L1 5834 5944 -296 1 1264 375 308 16 32 chr5 89047626 89047750 -63489509 + ID_B1 SINE B4 95 216 -8 1 1264 430 42 56 0 chr5 89047752 89047823 -63489436 + (TCTG)n Simple_repeat Simple_repeat 4 78 0 1 1264 220 370 90 0 chr5 89047824 89047924 -63489335 - B1F SINE Alu -36 113 5 1 1264 337 176 13 51 chr5 89047965 89048043 -63489216 - B1F1 SINE Alu -1 148 74 1 1264 871 245 125 92 chr5 89048218 89048385 -63488874 - L1MC1 LINE L1 -319 6014 5852 1 1264 1356 87 38 0 chr5 89048385 89048569 -63488690 - B2_Mm1t SINE B2 -2 191 1 1 1264 871 245 125 92 chr5 89048569 89048792 -63488467 - L1MC1 LINE L1 -482 5851 5611 1 1264 888 121 0 0 chr5 89049427 89049568 -63487691 + (TC)n Simple_repeat Simple_repeat 2 142 0 1 1264 591 85 0 0 chr5 89049577 89049659 -63487600 + (TCTCC)n Simple_repeat Simple_repeat 1 82 0 1 1264 1436 78 16 5 chr5 89049777 89049969 -63487290 + B2_Mm2 SINE B2 1 194 -1 1 1264 532 81 0 0 chr5 89049990 89050064 -63487195 - B1_Mur4 SINE Alu -6 144 71 1 1264 225 0 0 0 chr5 89050707 89050732 -63486527 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1 1264 219 36 0 0 chr5 89050733 89050761 -63486498 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1264 1085 170 151 0 chr5 89051065 89051277 -63485982 - Lx5 LINE L1 -231 6819 6576 1 1264 198 271 88 24 chr5 89051748 89051873 -63485386 + MIR SINE MIR 115 247 -15 1 1264 4791 8 0 0 chr5 89051886 89052415 -63484844 + L1Md_A LINE L1 5058 5586 -297 1 1264 8787 23 0 1 chr5 89052415 89053412 -63483847 + L1Md_A LINE L1 5587 6582 0 1 1264 242 0 61 0 chr5 89053530 89053563 -63483696 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1264 1197 75 0 0 chr5 89053570 89053716 -63483543 - B1_Mus2 SINE Alu 0 147 2 1 1264 1303 105 17 0 chr5 89053749 89053930 -63483329 - B2_Mm2 SINE B2 -9 186 3 1 1264 6064 54 5 1 chr5 89053959 89054700 -63482559 + L1_Mus2 LINE L1 5823 6566 0 1 1264 1225 192 45 132 chr5 89054901 89055387 -63481872 - Lx9 LINE L1 -8 7636 7193 1 1264 1217 34 7 0 chr5 89055621 89055767 -63481492 - B1_Mus1 SINE Alu 0 148 2 1 1264 189 0 0 0 chr5 89055779 89055800 -63481459 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1264 399 41 0 0 chr5 89055963 89056012 -63481247 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1264 338 322 13 20 chr5 89056552 89056701 -63480558 - B1F SINE Alu 0 149 2 1 1264 426 279 18 0 chr5 89056822 89056933 -63480326 + PB1D9 SINE Alu 1 113 -7 1 1264 515 238 92 8 chr5 89057650 89057781 -63479478 - B1_Mur1 SINE Alu -6 143 2 1 1264 1085 210 9 0 chr5 89057899 89058113 -63479146 + B3 SINE B2 1 216 0 1 1264 24 32 0 0 chr5 89058714 89058745 -63478514 + AT_rich Low_complexity Low_complexity 1 31 0 1 1264 222 37 0 0 chr5 89060444 89060471 -63476788 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 1 1264 292 188 92 23 chr5 89060480 89060567 -63476692 - PB1D10 SINE Alu 0 117 25 1 1264 781 281 26 30 chr5 89060824 89061088 -63476171 + B4A SINE B4 30 292 0 1 1264 321 277 126 11 chr5 89061203 89061298 -63475961 - PB1D7 SINE Alu -2 118 13 1 1264 937 201 10 25 chr5 89061870 89062069 -63475190 + B3 SINE B2 1 196 -20 1 1264 210 71 0 0 chr5 89062201 89062229 -63475030 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 1 1264 756 174 29 0 chr5 89062239 89062377 -63474882 - B1_Mus1 SINE Alu -5 143 2 1 1264 3251 157 84 17 chr5 89062755 89063398 -63473861 - RLTR17 LTR ERVK 0 692 7 1 1264 185 0 0 39 chr5 89063576 89063602 -63473657 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1 1264 422 227 29 49 chr5 89063603 89063705 -63473554 - PB1D10 SINE Alu -9 108 9 1 1264 580 276 12 58 chr5 89063618 89063791 -63473468 - ID_B1 SINE B4 -53 171 7 1 1264 327 23 0 23 chr5 89063792 89063836 -63473423 - HAL1-3A_ME LINE L1 -840 2018 1976 1 1264 221 296 0 0 chr5 89063836 89063890 -63473369 + (CGTG)n Simple_repeat Simple_repeat 2 55 0 1 1264 405 190 51 0 chr5 89063910 89063989 -63473270 - B1F SINE Alu -60 89 7 1 1264 240 35 0 0 chr5 89064445 89064474 -63472785 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1264 214 250 255 64 chr5 89064476 89064570 -63472689 - PB1D9 SINE Alu -8 112 1 1 1264 337 281 62 0 chr5 89064705 89064801 -63472458 - PB1D10 SINE Alu -11 106 5 1 1264 820 172 22 5 chr5 89064820 89064980 -63472279 - B3 SINE B2 -18 175 2 1 1264 26 0 0 0 chr5 89065070 89065096 -63472163 + AT_rich Low_complexity Low_complexity 1 26 0 1 1264 237 132 0 0 chr5 89065446 89065484 -63471775 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1264 1151 71 24 0 chr5 89065610 89065779 -63471480 + B2_Mm2 SINE B2 1 173 -22 1 1264 297 0 0 0 chr5 89065780 89065813 -63471446 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1264 540 0 0 0 chr5 89065813 89065872 -63471387 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1264 1449 161 291 0 chr5 89066631 89066954 -63470305 + MTD LTR MaLR 3 419 0 1 1264 698 267 61 0 chr5 89066996 89067176 -63470083 - B3A SINE B2 -6 192 2 1 1264 29 28 0 0 chr5 89067185 89067221 -63470038 + AT_rich Low_complexity Low_complexity 1 36 0 1 1264 869 49 16 0 chr5 89067221 89067344 -63469915 + B1_Mus1 SINE Alu 23 147 -1 1 1264 25 65 0 0 chr5 89067521 89067567 -63469692 + AT_rich Low_complexity Low_complexity 1 46 0 1 1264 1061 96 0 14 chr5 89067712 89067860 -63469399 - B1_Mus2 SINE Alu 0 147 2 1 1264 24 0 0 0 chr5 89067949 89067973 -63469286 + AT_rich Low_complexity Low_complexity 1 24 0 1 1264 405 0 0 0 chr5 89068238 89068283 -63468976 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1264 232 283 21 11 chr5 89068288 89068381 -63468878 + Lx9 LINE L1 7531 7624 -20 1 1264 245 181 0 5 chr5 89068403 89068455 -63468804 + B1F SINE Alu 83 132 -17 1 1264 243 0 0 0 chr5 89069170 89069197 -63468062 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 1 1264 22 0 0 0 chr5 89069590 89069612 -63467647 + AT_rich Low_complexity Low_complexity 1 22 0 1 1264 22 0 0 0 chr5 89070620 89070642 -63466617 + AT_rich Low_complexity Low_complexity 1 22 0 1 1264 212 292 11 11 chr5 89071730 89071820 -63465439 + CT-rich Low_complexity Low_complexity 2 91 0 1 1264 194 91 30 0 chr5 89074415 89074448 -63462811 + (GGGAA)n Simple_repeat Simple_repeat 3 36 0 1 1264 306 0 0 0 chr5 89074922 89074956 -63462303 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1264 673 169 8 41 chr5 89075166 89075289 -63461970 + PB1D9 SINE Alu 2 120 0 1 1264 729 156 14 7 chr5 89075466 89075608 -63461651 - RLTR31A_Mm LTR ERVK -434 150 8 1 1264 919 174 108 0 chr5 89076744 89076939 -63460320 - B3 SINE B2 0 216 1 1 1264 286 268 148 8 chr5 89077600 89077728 -63459531 - RSINE1 SINE B4 -18 147 2 1 1264 389 307 39 86 chr5 89077731 89077963 -63459296 - ID_B1 SINE B4 -2 222 2 1 1264 185 0 0 39 chr5 89078056 89078082 -63459177 + (GGAGA)n Simple_repeat Simple_repeat 5 29 0 1 1264 1197 41 7 0 chr5 89079285 89079430 -63457829 - B1_Mm SINE Alu 0 147 2 1 1264 689 210 91 0 chr5 89080468 89080644 -63456615 - B3 SINE B2 -10 206 15 1 1264 1565 186 148 19 chr5 89081678 89082051 -63455208 + MTC LTR MaLR 1 421 0 1 1264 234 246 31 0 chr5 89082224 89082289 -63454970 + CT-rich Low_complexity Low_complexity 1 67 0 1 1264 483 165 49 3 chr5 89082738 89082843 -63454416 + B1_Mur4 SINE Alu 1 115 -5 1 1264 1357 88 10 25 chr5 89082848 89083046 -63454213 + B2_Mm2 SINE B2 1 195 0 1 1264 1757 225 124 59 chr5 89083185 89083775 -63453484 + Lx7 LINE L1 7069 7696 0 1 1264 795 119 17 0 chr5 89083889 89084007 -63453252 + PB1D9 SINE Alu 1 120 0 1 1264 298 284 53 35 chr5 89084850 89084963 -63452296 + PB1 SINE Alu 2 116 -11 1 1264 447 202 53 35 chr5 89084967 89085080 -63452179 - PB1D10 SINE Alu -1 116 2 1 1264 246 215 48 48 chr5 89085394 89085477 -63451782 + L1MC LINE L1 5673 5755 -2127 1 1264 348 308 60 8 chr5 89086055 89086189 -63451070 + RSINE1 SINE B4 25 165 0 1 1264 281 293 48 24 chr5 89087321 89087405 -63449854 - PB1D7 SINE Alu -15 105 20 1 1264 529 289 0 39 chr5 89087766 89087921 -63449338 - B1_Mur1 SINE Alu 0 149 1 1 1264 1355 79 5 16 chr5 89087930 89088123 -63449136 - B2_Mm1a SINE B2 -1 192 2 1 1264 402 294 10 0 chr5 89089973 89090075 -63447184 + PB1D10 SINE Alu 15 117 0 1 1264 798 251 76 50 chr5 89090172 89090608 -63446651 + Lx9 LINE L1 6977 7423 -221 1 1264 306 0 0 0 chr5 89090661 89090695 -63446564 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1264 357 24 0 0 chr5 89090695 89090736 -63446523 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1264 1919 167 105 39 chr5 89091042 89091479 -63445780 + RMER4A LTR ERVK 1 466 0 1 1264 240 267 188 0 chr5 89091753 89091854 -63445405 + PB1 SINE Alu 1 120 -7 1 1264 24 0 0 0 chr5 89091939 89091963 -63445296 + AT_rich Low_complexity Low_complexity 1 24 0 1 1264 282 295 157 26 chr5 89092391 89092506 -63444753 + RSINE1 SINE B4 11 140 -25 1 1264 222 222 0 53 chr5 89092853 89092910 -63444349 - PB1 SINE Alu -7 120 67 1 1264 343 235 158 58 chr5 89093763 89093953 -63443306 + B3 SINE B2 4 212 -4 1 1264 414 262 112 11 chr5 89094009 89094186 -63443073 + B3A SINE B2 30 216 0 1 1264 1622 32 21 0 chr5 89094200 89094389 -63442870 + B2_Mm1a SINE B2 1 193 0 2 1264 198 0 0 0 chr5 89094392 89094414 -63442845 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2 1264 442 298 72 7 chr5 89094421 89094573 -63442686 + RSINE1 SINE B4 2 163 -2 2 1264 309 235 12 12 chr5 89095077 89095163 -63442096 + B3A SINE B2 40 125 -73 2 1264 1496 57 15 20 chr5 89095281 89095477 -63441782 + B2_Mm2 SINE B2 1 195 0 2 1264 330 280 67 15 chr5 89095784 89095918 -63441341 + ID_B1 SINE B4 81 221 -3 2 1264 1194 48 0 13 chr5 89095935 89096084 -63441175 + B1_Mus2 SINE Alu 1 147 0 2 1264 365 289 46 76 chr5 89096378 89096509 -63440750 - RSINE1 SINE B4 -31 134 8 2 1264 386 267 36 51 chr5 89096845 89096983 -63440276 + ID_B1 SINE B4 77 212 -12 2 1264 334 318 5 115 chr5 89097184 89097292 -63439967 + ID_B1 SINE B4 15 207 -17 2 1264 377 229 138 0 chr5 89097292 89097401 -63439858 + B1F2 SINE Alu 9 132 -17 2 1264 543 217 168 0 chr5 89097412 89097555 -63439704 + B3 SINE B2 39 205 -11 2 1264 237 33 0 0 chr5 89097565 89097595 -63439664 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1264 306 39 77 19 chr5 89097656 89097708 -63439551 + B3A SINE B2 2 56 -142 2 1264 472 212 6 159 chr5 89097841 89097885 -63439374 + B3A SINE B2 9 39 -159 2 1264 1261 34 0 7 chr5 89097885 89098033 -63439226 + B1_Mus1 SINE Alu 2 148 0 2 1264 472 219 26 155 chr5 89098033 89098179 -63439080 + B3A SINE B2 40 189 -27 2 1264 609 242 148 31 chr5 89098459 89098715 -63438544 + B4A SINE B4 1 286 -6 2 1264 22 70 0 0 chr5 89098881 89098924 -63438335 + AT_rich Low_complexity Low_complexity 1 43 0 2 1264 658 201 69 0 chr5 89099704 89099863 -63437396 - ID_B1 SINE B4 -53 171 2 2 1264 306 0 0 0 chr5 89100343 89100377 -63436882 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1264 1177 55 0 7 chr5 89100451 89100598 -63436661 - B1_Mm SINE Alu 0 147 2 2 1264 1022 50 0 21 chr5 89100624 89100767 -63436492 - B1_Mus2 SINE Alu 0 147 8 2 1264 1220 48 0 0 chr5 89100920 89101067 -63436192 + B1_Mm SINE Alu 1 147 0 2 1264 397 266 39 97 chr5 89101281 89101435 -63435824 + B3A SINE B2 40 184 -14 2 1264 230 167 56 0 chr5 89101891 89101945 -63435314 - Lx7 LINE L1 -18 7678 7622 2 1264 327 125 333 0 chr5 89102023 89102095 -63435164 + B1_Mus2 SINE Alu 11 106 -41 2 1264 282 259 23 12 chr5 89103000 89103086 -63434173 - PB1D10 SINE Alu 0 117 31 2 1264 240 35 0 0 chr5 89103777 89103806 -63433453 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2 1264 25 51 0 0 chr5 89104737 89104776 -63432483 + GC_rich Low_complexity Low_complexity 1 39 0 2 1264 23 0 0 0 chr5 89104792 89104815 -63432444 + GC_rich Low_complexity Low_complexity 1 23 0 2 1264 23 0 0 0 chr5 89104860 89104883 -63432376 + GC_rich Low_complexity Low_complexity 1 23 0 2 1264 21 0 0 0 chr5 89104957 89104978 -63432281 + GC_rich Low_complexity Low_complexity 1 21 0 2 1264 27 29 0 0 chr5 89105577 89105611 -63431648 + AT_rich Low_complexity Low_complexity 1 34 0 2 1264 21 0 0 0 chr5 89105715 89105736 -63431523 + AT_rich Low_complexity Low_complexity 1 21 0 2 1264 767 204 6 1 chr5 89106102 89106285 -63430974 - B3 SINE B2 -10 188 1 2 1264 824 168 143 35 chr5 89106533 89106736 -63430523 - URR1B DNA MER1_type 0 225 1 2 1264 254 184 20 0 chr5 89106937 89106986 -63430273 - RSINE1 SINE B4 -114 51 2 2 1264 602 250 67 26 chr5 89107098 89107291 -63429968 - B4A SINE B4 -8 284 84 2 1264 519 190 79 47 chr5 89107392 89107519 -63429740 - B1_Mur3 SINE Alu -17 132 2 2 1264 379 195 165 25 chr5 89107796 89107917 -63429342 + B1_Mur1 SINE Alu 12 149 0 2 1264 975 182 17 86 chr5 89108919 89109153 -63428106 + URR1B DNA MER1_type 8 225 0 2 1264 281 68 0 22 chr5 89109369 89109414 -63427845 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1264 255 31 0 0 chr5 89109414 89109445 -63427814 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1264 24 0 0 0 chr5 89109511 89109535 -63427724 + AT_rich Low_complexity Low_complexity 1 24 0 2 1264 518 229 57 0 chr5 89109595 89109717 -63427542 - RSINE1 SINE B4 -33 132 4 2 1264 396 0 0 0 chr5 89110367 89110411 -63426848 + (CAGAGA)n Simple_repeat Simple_repeat 5 48 0 2 1264 1223 48 0 0 chr5 89110704 89110851 -63426408 + B1_Mus2 SINE Alu 1 147 0 2 1264 180 0 0 0 chr5 89110851 89110871 -63426388 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1264 1645 21 21 0 chr5 89110871 89111059 -63426200 + B2_Mm1a SINE B2 2 193 0 2 1264 1196 61 0 0 chr5 89111086 89111233 -63426026 - B1_Mus1 SINE Alu 0 148 2 2 1264 212 276 26 0 chr5 89111264 89111340 -63425919 + MIRc SINE MIR 66 143 -125 2 1264 216 232 317 0 chr5 89111666 89111748 -63425511 - PB1D10 SINE Alu 0 117 10 2 1264 647 310 17 0 chr5 89111889 89112063 -63425196 - B3A SINE B2 -18 180 4 2 1264 591 206 0 191 chr5 89112523 89112691 -63424568 - B1_Mur1 SINE Alu -11 138 3 2 1264 259 375 69 11 chr5 89113087 89113100 -63424159 - L2c LINE L2 -32 3355 3342 2 1264 1003 207 51 9 chr5 89113100 89113315 -63423944 + URR1B DNA MER1_type 2 225 0 2 1264 259 375 69 11 chr5 89113315 89113563 -63423696 - L2c LINE L2 -46 3341 3080 2 1264 24 32 0 0 chr5 89113832 89113863 -63423396 + AT_rich Low_complexity Low_complexity 1 31 0 2 1264 314 107 18 0 chr5 89115049 89115105 -63422154 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1264 968 229 10 15 chr5 89115262 89115466 -63421793 + B3 SINE B2 2 204 -12 2 1264 180 97 0 0 chr5 89115474 89115505 -63421754 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2 1264 591 214 83 15 chr5 89115508 89115641 -63421618 - B1_Mur1 SINE Alu -3 146 5 2 1264 27 0 0 0 chr5 89115644 89115671 -63421588 + AT_rich Low_complexity Low_complexity 1 27 0 2 1264 1357 82 27 0 chr5 89115954 89116138 -63421121 - B2_Mm1t SINE B2 -4 189 1 2 1264 921 138 14 14 chr5 89116186 89116333 -63420926 + B1_Mur4 SINE Alu 2 148 -2 2 1264 556 271 0 8 chr5 89116525 89116655 -63420604 - RSINE1 SINE B4 -35 130 2 2 1264 1055 142 11 21 chr5 89116843 89117030 -63420229 - B2_Mm2 SINE B2 -9 186 2 2 1264 867 325 94 72 chr5 89117514 89118339 -63418920 + MTE-int LTR MaLR 609 1452 -128 2 1264 847 236 10 25 chr5 89118367 89118567 -63418692 - B3A SINE B2 0 198 2 2 1264 315 0 0 0 chr5 89118653 89118688 -63418571 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 2 1264 740 104 137 0 chr5 89118688 89118839 -63418420 - B2_Mm2 SINE B2 -14 202 3 2 1264 683 197 208 27 chr5 89119011 89119194 -63418065 - B3 SINE B2 0 216 1 2 1264 1434 69 26 0 chr5 89119222 89119411 -63417848 + B2_Mm2 SINE B2 2 195 0 2 1264 253 105 0 0 chr5 89119787 89119825 -63417434 - tRNA-Gly-GGA tRNA tRNA -37 38 1 2 1264 368 136 0 15 chr5 89120342 89120409 -63416850 + ORR1A2 LTR MaLR 2 67 -260 2 1264 299 102 0 0 chr5 89120394 89120443 -63416816 - B3 SINE B2 -164 52 4 2 1264 579 255 79 53 chr5 89120496 89120724 -63416535 - Lx8 LINE L1 -28 7445 7212 2 1264 305 242 58 0 chr5 89120730 89120824 -63416435 - Lx8 LINE L1 -993 6703 6604 2 1264 214 333 156 0 chr5 89121108 89121243 -63416016 - MIRb SINE MIR -71 197 42 2 1264 339 253 21 0 chr5 89121366 89121461 -63415798 + Lx8 LINE L1 6935 7031 -442 2 1264 442 149 0 0 chr5 89121462 89121536 -63415723 - ORR1D2 LTR MaLR -2 368 295 2 1264 1023 224 177 29 chr5 89121634 89122079 -63415180 + RLTR20A1 LTR ERVK 1 563 0 2 1264 1105 98 59 21 chr5 89122169 89122356 -63414903 + B2_Mm2 SINE B2 2 195 0 2 1264 960 230 14 19 chr5 89122600 89122813 -63414446 + B3 SINE B2 1 212 -4 2 1264 444 191 48 87 chr5 89123501 89123528 -63413731 + B4 SINE B4 69 189 -103 2 1264 739 61 0 0 chr5 89123528 89123627 -63413632 + B1_Mus1 SINE Alu 1 99 -49 2 1264 250 45 45 0 chr5 89123796 89123840 -63413419 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 2 1264 1118 286 24 24 chr5 89123840 89124291 -63412968 + L1MA4 LINE L1 5480 5930 -370 2 1264 324 0 0 0 chr5 89124341 89124377 -63412882 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1264 548 236 0 74 chr5 89124558 89124713 -63412546 + B1F SINE Alu 1 149 0 2 1264 333 0 0 0 chr5 89124740 89124777 -63412482 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1264 223 317 67 0 chr5 89124792 89124852 -63412407 - ID4_ SINE ID -13 70 7 2 1264 225 256 0 0 chr5 89125129 89125172 -63412087 - RLTR18 LTR ERVK -337 175 133 2 1264 526 272 0 64 chr5 89125279 89125452 -63411807 - RLTR18 LTR ERVK -454 162 1 2 1264 720 281 7 91 chr5 89125504 89125809 -63411450 - B4A SINE B4 -2 290 12 2 1264 292 207 0 0 chr5 89125772 89125830 -63411429 + B1F SINE Alu 67 124 -25 2 1264 284 288 62 57 chr5 89125863 89126073 -63411186 + Lx8 LINE L1 7231 7441 -32 2 1264 321 244 65 32 chr5 89126297 89126390 -63410869 - PB1D10 SINE Alu -4 113 18 2 1264 733 251 214 69 chr5 89126476 89126870 -63410389 + Lx8 LINE L1 7014 7464 -9 2 1264 1258 96 39 22 chr5 89126883 89127065 -63410194 - B2_Mm2 SINE B2 -7 188 4 2 1264 22 0 0 0 chr5 89127109 89127131 -63410128 + AT_rich Low_complexity Low_complexity 1 22 0 2 1264 22 35 0 0 chr5 89127295 89127324 -63409935 + AT_rich Low_complexity Low_complexity 1 29 0 2 1264 1408 84 11 0 chr5 89127430 89127620 -63409639 - B2_Mm1t SINE B2 -1 192 1 2 1264 247 250 19 0 chr5 89128197 89128249 -63409010 - B1_Mus2 SINE Alu -89 58 6 3 1264 216 91 0 29 chr5 89128344 89128378 -63408881 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 3 1264 384 167 0 0 chr5 89128378 89128450 -63408809 + CT-rich Low_complexity Low_complexity 1 72 0 3 1264 542 152 170 0 chr5 89128455 89128567 -63408692 - B1_Mur4 SINE Alu -19 131 1 3 1264 348 253 46 10 chr5 89128638 89128753 -63408506 + MLT1A1 LTR MaLR 1 124 -284 3 19 285 266 43 52 chr5 89128847 89128962 -63408297 + MLT1A1 LTR MaLR 246 359 -6 3 1265 411 310 50 31 chr5 89129033 89129193 -63408066 - RSINE1 SINE B4 0 165 3 3 1265 306 0 0 0 chr5 89129202 89129236 -63408023 + (TTA)n Simple_repeat Simple_repeat 1 34 0 3 1265 246 360 0 9 chr5 89129237 89129349 -63407910 + (TG)n Simple_repeat Simple_repeat 2 112 0 3 1265 271 188 0 0 chr5 89129356 89129404 -63407855 - Lx8 LINE L1 -3 7470 7423 3 1265 584 216 0 0 chr5 89129737 89129848 -63407411 + B3 SINE B2 16 126 -90 3 1265 23 68 0 0 chr5 89129855 89129899 -63407360 + AT_rich Low_complexity Low_complexity 1 44 0 3 1265 296 293 231 36 chr5 89130256 89130554 -63406705 - ORR1E LTR MaLR -4 375 20 3 1265 379 208 0 27 chr5 89130606 89130680 -63406579 - ID4_ SINE ID -10 73 2 3 1265 325 238 28 28 chr5 89130680 89130788 -63406471 - PB1D10 SINE Alu -1 116 9 3 1265 346 246 124 83 chr5 89131285 89131502 -63405757 - RLTR26 LTR ERVK -225 417 192 3 1265 862 67 0 16 chr5 89131832 89131954 -63405305 - B1_Mm SINE Alu 0 147 28 3 1265 540 209 52 9 chr5 89131985 89132101 -63405158 + B1F SINE Alu 3 123 -26 3 1265 23 68 0 0 chr5 89132138 89132182 -63405077 + AT_rich Low_complexity Low_complexity 1 44 0 3 1265 342 256 100 69 chr5 89132194 89132324 -63404935 - ID_B1 SINE B4 0 224 91 3 1265 1129 74 0 26 chr5 89132468 89132620 -63404639 - B1_Mus1 SINE Alu 0 148 1 3 1265 2390 130 14 2 chr5 89133009 89133405 -63403854 + MTC LTR MaLR 1 392 -29 3 1265 185 0 40 0 chr5 89133413 89133438 -63403821 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1265 28 48 0 0 chr5 89133445 89133487 -63403772 + AT_rich Low_complexity Low_complexity 1 42 0 3 1265 508 171 161 8 chr5 89133972 89134096 -63403163 - MTC LTR MaLR 0 421 279 3 1265 883 127 7 13 chr5 89134092 89134244 -63403015 - MTC LTR MaLR -270 151 1 3 1265 483 283 0 0 chr5 89134244 89134362 -63402897 - B3 SINE B2 -96 120 3 3 1265 3736 251 60 36 chr5 89134393 89135447 -63401812 + Lx8 LINE L1 6205 7283 -190 3 1265 1124 224 0 0 chr5 89135509 89135723 -63401536 + B3 SINE B2 3 216 0 3 1265 216 224 17 0 chr5 89135788 89135846 -63401413 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1265 396 0 0 0 chr5 89135873 89135917 -63401342 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1265 787 201 0 14 chr5 89135920 89136066 -63401193 - B1_Mur1 SINE Alu -5 144 1 3 1265 339 250 14 0 chr5 89136104 89136176 -63401083 + B3A SINE B2 1 73 -125 3 1265 191 133 0 22 chr5 89136215 89136261 -63400998 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1265 357 351 37 84 chr5 89136389 89136579 -63400680 + B4 SINE B4 107 287 -5 3 1265 1478 57 10 25 chr5 89136638 89136836 -63400423 + B2_Mm2 SINE B2 1 195 0 3 1265 328 174 87 0 chr5 89136888 89136957 -63400302 - PB1D10 SINE Alu 0 117 43 3 1265 324 226 11 45 chr5 89137120 89137208 -63400051 + B4A SINE B4 4 88 -204 3 1265 3301 58 46 0 chr5 89137241 89137658 -63399601 + RLTR10C LTR ERVK 1 436 0 3 1265 527 281 9 71 chr5 89137803 89138014 -63399245 + B3A SINE B2 1 198 0 3 1265 4860 48 3 2 chr5 89138142 89138728 -63398531 - LTRIS_Mus LTR ERV1 0 587 1 3 1265 1295 21 0 0 chr5 89138961 89139106 -63398153 + B1_Mm SINE Alu 2 146 -1 3 1265 752 214 27 36 chr5 89139125 89139348 -63397911 - RMER1A Other Other -10 1020 800 3 1265 307 295 84 19 chr5 89139367 89139474 -63397785 - PB1D10 SINE Alu -1 116 3 3 1265 925 217 39 58 chr5 89139611 89140077 -63397182 + RMER17C LTR ERVK 6 410 0 3 1265 248 77 0 25 chr5 89140474 89140514 -63396745 + (TCCCC)n Simple_repeat Simple_repeat 4 42 0 3 1265 26 0 0 0 chr5 89140614 89140640 -63396619 + GC_rich Low_complexity Low_complexity 1 26 0 3 1265 300 154 0 0 chr5 89141463 89141515 -63395744 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1265 34 72 0 0 chr5 89141888 89141957 -63395302 + AT_rich Low_complexity Low_complexity 1 69 0 3 1265 787 189 0 7 chr5 89141991 89142135 -63395124 - B1_Mus2 SINE Alu 0 147 5 3 1265 269 206 32 0 chr5 89142205 89142268 -63394991 - ID4_ SINE ID -18 65 1 3 1265 686 172 17 0 chr5 89142336 89142452 -63394807 - PB1D9 SINE Alu -1 119 2 3 1265 4808 117 26 11 chr5 89142501 89143243 -63394016 + RMER6A LTR ERVK 1 753 -3 3 1265 546 292 38 136 chr5 89143589 89143818 -63393441 - B4A SINE B4 -6 286 96 3 1265 530 263 0 0 chr5 89143818 89143936 -63393323 - PB1D9 SINE Alu -2 118 1 3 1265 546 292 38 136 chr5 89143936 89144023 -63393236 - B4A SINE B4 -197 95 1 3 1265 282 271 114 44 chr5 89144798 89144956 -63392303 - Lx8 LINE L1 -1 7472 7304 3 1265 373 254 210 7 chr5 89144960 89145103 -63392156 - Lx8 LINE L1 -329 7144 6973 3 1265 309 183 159 28 chr5 89145103 89145210 -63392049 + RLTR15 LTR ERVK 1 121 -238 3 1265 425 254 36 71 chr5 89145317 89145542 -63391717 + RLTR15 LTR ERVK 143 359 0 3 1265 267 197 82 0 chr5 89145556 89145617 -63391642 - Lx8 LINE L1 -514 6959 6894 3 1265 332 182 83 131 chr5 89145795 89145940 -63391319 - L1MC5 LINE L1 -532 7429 7292 3 1265 308 338 127 18 chr5 89146029 89146312 -63390947 + L2 LINE L2 2309 2622 -797 3 1265 690 261 22 70 chr5 89146765 89146935 -63390324 + B3 SINE B2 1 170 -46 3 1265 1585 50 0 0 chr5 89146935 89147135 -63390124 + L1_Mus2 LINE L1 6367 6566 0 3 1265 690 261 22 70 chr5 89147135 89147191 -63390068 + B3 SINE B2 171 216 0 3 1265 317 292 87 72 chr5 89147253 89147460 -63389799 + B4A SINE B4 83 292 0 3 1265 595 196 12 174 chr5 89147959 89148126 -63389133 + B1_Mur4 SINE Alu 1 140 -10 3 1265 266 0 0 29 chr5 89148126 89148161 -63389098 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1265 659 194 0 8 chr5 89148586 89148716 -63388543 - B1_Mur1 SINE Alu 0 149 21 3 1265 214 286 71 0 chr5 89148654 89148738 -63388521 - B4A SINE B4 -125 167 78 3 1265 309 26 0 0 chr5 89148992 89149030 -63388229 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1265 259 284 15 0 chr5 89149051 89149118 -63388141 - ID_B1 SINE B4 -69 155 88 3 1265 419 214 165 0 chr5 89149138 89149241 -63388018 - RSINE1 SINE B4 -35 130 11 3 1265 256 288 0 56 chr5 89150393 89150573 -63386686 + C-rich Low_complexity Low_complexity 1 170 0 3 1265 281 230 57 57 chr5 89150545 89150720 -63386539 + (CCCTG)n Simple_repeat Simple_repeat 4 178 0 3 1265 201 250 57 63 chr5 89150801 89150976 -63386283 + (CCCTG)n Simple_repeat Simple_repeat 5 178 0 3 1265 608 188 25 17 chr5 89152836 89152955 -63384304 + PB1D9 SINE Alu 1 120 0 3 1265 1182 105 80 17 chr5 89152968 89153143 -63384116 - B2_Mm2 SINE B2 -8 187 2 3 1265 185 0 0 39 chr5 89154081 89154107 -63383152 + (TTTTTA)n Simple_repeat Simple_repeat 6 30 0 3 1265 735 44 0 0 chr5 89154501 89154592 -63382667 + (TTCTC)n Simple_repeat Simple_repeat 4 94 0 3 1265 711 139 164 0 chr5 89154592 89154714 -63382545 - B1_Mus1 SINE Alu -6 142 1 3 1265 502 217 43 63 chr5 89154919 89155085 -63382174 - B3 SINE B2 -11 184 25 3 1265 1224 41 0 0 chr5 89155680 89155826 -63381433 + B1_Mm SINE Alu 2 147 0 3 1265 243 0 0 0 chr5 89155826 89155853 -63381406 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1265 251 274 41 0 chr5 89156033 89156106 -63381153 + RSINE1 SINE B4 3 78 -87 3 1265 1012 130 7 0 chr5 89156401 89156547 -63380712 + B1_Mus2 SINE Alu 1 147 0 3 1265 21 0 0 0 chr5 89156563 89156584 -63380675 + AT_rich Low_complexity Low_complexity 1 21 0 3 1265 214 167 0 0 chr5 89156676 89156718 -63380541 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1265 267 146 0 0 chr5 89156719 89156774 -63380485 + (CAGA)n Simple_repeat Simple_repeat 1 55 0 3 1265 354 23 0 0 chr5 89156774 89156817 -63380442 + HAL1-3A_ME LINE L1 1976 2018 -840 3 1265 629 253 116 83 chr5 89156903 89157138 -63380121 - L1MC4 LINE L1 -427 7615 7393 3 1265 207 0 0 0 chr5 89157138 89157161 -63380098 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 3 1265 805 134 24 0 chr5 89157161 89157288 -63379971 - B1_Mus1 SINE Alu -18 130 1 3 1265 629 253 116 83 chr5 89157288 89157543 -63379716 - L1MC4 LINE L1 -650 7392 7109 3 1265 757 243 42 79 chr5 89157805 89158158 -63379101 - RLTR15 LTR ERVK -19 340 1 3 1265 5596 227 89 70 chr5 89158163 89160208 -63377051 - MYSERV-int LTR ERVK -6 6544 4452 3 1265 342 0 0 0 chr5 89160212 89160250 -63377009 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1265 296 194 32 0 chr5 89160455 89160517 -63376742 - L1MC4 LINE L1 -1041 7001 6938 3 1265 1195 48 0 7 chr5 89160744 89160891 -63376368 - B1_Mm SINE Alu 0 147 2 3 1265 444 299 39 8 chr5 89161468 89161596 -63375663 - B1F1 SINE Alu -15 134 3 3 1265 542 238 0 180 chr5 89161610 89161810 -63375449 - B3 SINE B2 -1 194 31 3 1265 341 250 11 0 chr5 89161909 89161997 -63375262 + PB1 SINE Alu 14 102 -25 3 1265 650 96 0 71 chr5 89162041 89162153 -63375106 - B1_Mur3 SINE Alu -8 141 38 3 1265 264 274 180 47 chr5 89162608 89162819 -63374440 + L1MC4a LINE L1 6526 6764 -1118 3 1265 794 181 72 0 chr5 89163402 89163540 -63373719 - B1_Mur2 SINE Alu -1 148 1 3 1265 23 54 0 0 chr5 89163596 89163633 -63373626 + AT_rich Low_complexity Low_complexity 1 37 0 3 1265 954 193 75 10 chr5 89163945 89164144 -63373115 - B3 SINE B2 -3 213 2 3 1265 1137 70 0 14 chr5 89164333 89164479 -63372780 + B1_Mus1 SINE Alu 3 146 -2 3 1265 723 190 28 0 chr5 89164588 89164730 -63372529 - B1_Mm SINE Alu 0 147 2 3 1265 261 91 61 0 chr5 89164731 89164797 -63372462 + T-rich Low_complexity Low_complexity 1 70 0 4 1265 1269 20 0 7 chr5 89164797 89164945 -63372314 - B1_Mm SINE Alu 0 147 1 4 1265 629 156 57 16 chr5 89164947 89165071 -63372188 - B1F2 SINE Alu -2 147 19 4 1265 374 270 133 80 chr5 89165089 89165188 -63372071 - L1MC LINE L1 -852 5294 5205 4 1265 1447 88 0 15 chr5 89165188 89165385 -63371874 - B2_Mm2 SINE B2 0 195 2 4 1265 374 271 131 77 chr5 89165385 89165710 -63371549 - L1MC LINE L1 -942 5204 4848 4 1265 232 195 0 0 chr5 89166105 89166146 -63371113 - B4A SINE B4 -17 275 235 4 1265 2040 153 94 3 chr5 89166235 89166595 -63370664 - ORR1B1 LTR MaLR -1 393 1 4 1265 468 0 0 0 chr5 89166684 89166736 -63370523 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1265 384 22 0 0 chr5 89166736 89166780 -63370479 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1265 26 0 0 0 chr5 89167330 89167356 -63369903 + AT_rich Low_complexity Low_complexity 1 26 0 4 1265 809 163 22 0 chr5 89169099 89169234 -63368025 + B1_Mus2 SINE Alu 3 140 -7 4 1265 330 91 0 0 chr5 89169263 89169318 -63367941 + (GA)n Simple_repeat Simple_repeat 2 56 0 4 1265 21 0 0 0 chr5 89169337 89169358 -63367901 + AT_rich Low_complexity Low_complexity 1 21 0 4 1265 6957 80 19 36 chr5 89169603 89170743 -63366516 - L1_Mus4 LINE L1 -18 6618 5495 4 1265 1038 103 14 7 chr5 89170775 89170922 -63366337 - B1_Mus1 SINE Alu 0 148 1 4 1265 264 305 36 51 chr5 89171009 89171147 -63366112 - L2 LINE L2 -533 2886 2751 4 1265 212 0 36 0 chr5 89171447 89171475 -63365784 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1265 717 226 44 0 chr5 89171475 89171612 -63365647 - B1_Mur3 SINE Alu -6 143 1 4 1265 399 21 0 0 chr5 89171657 89171705 -63365554 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1265 488 264 72 0 chr5 89172938 89173063 -63364196 - B1_Mur1 SINE Alu -15 134 1 4 1265 225 209 0 0 chr5 89173075 89173142 -63364117 + (TCCTG)n Simple_repeat Simple_repeat 4 70 0 4 1265 21 57 0 0 chr5 89173203 89173238 -63364021 + AT_rich Low_complexity Low_complexity 1 35 0 4 1265 624 256 105 0 chr5 89173263 89173396 -63363863 - RSINE1 SINE B4 -1 164 18 4 1265 180 0 0 0 chr5 89173667 89173687 -63363572 + (TGG)n Simple_repeat Simple_repeat 2 21 0 4 1265 197 180 20 0 chr5 89173849 89173899 -63363360 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1265 22 35 0 0 chr5 89174027 89174056 -63363203 + AT_rich Low_complexity Low_complexity 1 29 0 4 1265 949 68 14 7 chr5 89174316 89174463 -63362796 + (TTCC)n Simple_repeat Simple_repeat 3 150 0 4 1265 352 230 225 20 chr5 89174712 89174863 -63362396 - B3A SINE B2 -15 183 2 4 1265 234 0 0 0 chr5 89174916 89174942 -63362317 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1265 628 218 28 21 chr5 89175480 89175625 -63361634 - B1_Mur3 SINE Alu -2 147 2 4 1265 21 57 0 0 chr5 89175652 89175687 -63361572 + AT_rich Low_complexity Low_complexity 1 35 0 4 1265 248 292 56 19 chr5 89176031 89176139 -63361120 - PB1D10 SINE Alu -5 112 1 4 1265 834 215 22 22 chr5 89176651 89176846 -63360413 - B3 SINE B2 0 195 1 4 1265 713 269 43 21 chr5 89176868 89177054 -63360205 - B3A SINE B2 -5 193 4 4 1265 223 280 63 21 chr5 89177119 89177214 -63360045 + L3b LINE CR1 196 294 -188 4 1265 460 204 57 0 chr5 89178223 89178311 -63358948 + B1_Mur2 SINE Alu 8 100 -49 4 1265 213 192 0 55 chr5 89178311 89178366 -63358893 + GA-rich Low_complexity Low_complexity 4 55 0 4 1265 644 229 25 0 chr5 89179080 89179198 -63358061 - B1_Mus1 SINE Alu -21 127 7 4 1265 779 186 0 6 chr5 89179199 89179361 -63357898 + CT-rich Low_complexity Low_complexity 3 163 0 4 1265 895 63 16 0 chr5 89179361 89179488 -63357771 + (TC)n Simple_repeat Simple_repeat 1 129 0 4 1265 952 107 119 0 chr5 89179507 89179666 -63357593 - B2_Mm1t SINE B2 -14 179 2 4 1265 225 0 0 0 chr5 89179668 89179693 -63357566 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1265 279 260 146 0 chr5 89180091 89180187 -63357072 - PB1D10 SINE Alu 0 117 8 4 1265 1218 54 0 0 chr5 89180208 89180355 -63356904 + B1_Mus2 SINE Alu 1 147 0 4 1265 331 257 128 27 chr5 89180667 89180815 -63356444 - L1MC4 LINE L1 -329 7713 7551 4 1265 318 384 33 27 chr5 89180981 89181131 -63356128 - RSINE1 SINE B4 -12 153 3 4 1265 22 0 0 0 chr5 89181133 89181155 -63356104 + AT_rich Low_complexity Low_complexity 1 22 0 4 1265 254 291 107 13 chr5 89181334 89181484 -63355775 - L1MA9 LINE L1 -290 6022 5859 4 1265 368 209 22 44 chr5 89181505 89181595 -63355664 - PB1D10 SINE Alu 0 117 30 4 1265 249 109 0 0 chr5 89181595 89181641 -63355618 + (TCTG)n Simple_repeat Simple_repeat 1 46 0 4 1265 1190 68 0 0 chr5 89181665 89181811 -63355448 - B1_Mus2 SINE Alu -1 146 1 4 1265 447 272 73 7 chr5 89182638 89182775 -63354484 + B1F SINE Alu 4 149 0 4 1265 353 283 9 0 chr5 89183186 89183292 -63353967 + PB1D10 SINE Alu 1 107 -10 4 1265 755 404 88 33 chr5 89183970 89184492 -63352767 + MER115 DNA Tip100 143 693 0 4 1265 197 347 0 100 chr5 89184852 89185012 -63352247 - MIRb SINE MIR -29 239 96 4 1265 21 36 0 0 chr5 89185419 89185447 -63351812 + AT_rich Low_complexity Low_complexity 1 28 0 4 1265 315 105 0 0 chr5 89187464 89187521 -63349738 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1265 668 222 36 82 chr5 89187634 89187652 -63349607 - ID_B1 SINE B4 -51 241 178 4 1265 879 114 15 0 chr5 89187652 89187783 -63349476 - B1_Mur4 SINE Alu 0 150 18 4 1265 668 222 36 82 chr5 89187783 89187813 -63349446 - ID_B1 SINE B4 -51 177 60 4 1265 574 193 0 73 chr5 89187915 89188038 -63349221 - PB1D9 SINE Alu -6 114 1 4 1265 181 277 29 78 chr5 89188585 89188687 -63348572 - L3 LINE CR1 -2220 2269 2173 4 1265 375 274 84 58 chr5 89188747 89188937 -63348322 + MARNA DNA Mariner 44 238 -348 4 1265 21 57 0 0 chr5 89191420 89191455 -63345804 + AT_rich Low_complexity Low_complexity 1 35 0 4 1265 1222 93 12 0 chr5 89191686 89191858 -63345401 + B2_Mm1t SINE B2 1 174 -19 4 1265 949 221 15 0 chr5 89191937 89192136 -63345123 - B3 SINE B2 -10 206 5 4 1265 3029 217 84 45 chr5 89192143 89193137 -63344122 - Lx7 LINE L1 -4 7692 6621 4 1265 180 0 0 0 chr5 89193370 89193390 -63343869 + (TG)n Simple_repeat Simple_repeat 1 20 0 4 1265 274 285 68 63 chr5 89194607 89194828 -63342431 - L1ME1 LINE L1 -117 6062 5841 4 1265 696 161 80 7 chr5 89194863 89195001 -63342258 - B1_Mur2 SINE Alu 0 149 2 4 1265 550 232 7 48 chr5 89196366 89196511 -63340748 - B1_Mur1 SINE Alu 0 149 11 4 1265 292 212 7 169 chr5 89196407 89196543 -63340716 - MT2B LTR ERVL -338 263 150 4 1265 1097 78 0 0 chr5 89197074 89197216 -63340043 - B1_Mus1 SINE Alu -5 143 2 4 1265 704 147 155 0 chr5 89197840 89197969 -63339290 - B1_Mur3 SINE Alu 0 149 1 4 1265 256 311 191 7 chr5 89198030 89198059 -63339200 - B4 SINE B4 -35 257 229 4 1265 484 291 0 29 chr5 89198059 89198197 -63339062 - B1F SINE Alu -12 137 4 4 1265 256 311 191 7 chr5 89198197 89198303 -63338956 - B4 SINE B4 -64 228 98 4 1265 400 236 65 19 chr5 89198199 89198307 -63338952 - PB1D10 SINE Alu 0 117 5 4 1265 695 196 151 5 chr5 89198784 89198969 -63338290 + B3 SINE B2 1 212 -4 4 1265 1138 151 333 37 chr5 89199616 89199940 -63337319 - MTC LTR MaLR 0 421 2 4 1265 1225 41 0 7 chr5 89200100 89200248 -63337011 - B1_Mus2 SINE Alu 0 147 1 4 1265 369 241 13 0 chr5 89200468 89200547 -63336712 + ID4_ SINE ID 2 81 -2 4 1265 1527 41 5 20 chr5 89200609 89200806 -63336453 - B2_Mm2 SINE B2 0 195 2 4 1265 509 128 282 0 chr5 89201200 89201317 -63335942 - B1_Mur4 SINE Alu 0 150 1 4 1265 323 220 18 83 chr5 89201233 89201342 -63335917 - MT2B LTR ERVL -356 245 144 4 1265 455 202 24 0 chr5 89201334 89201418 -63335841 - B3A SINE B2 -109 89 4 4 1265 594 195 26 9 chr5 89201469 89201583 -63335676 + PB1D9 SINE Alu 5 120 0 4 1265 1198 106 56 6 chr5 89202154 89202334 -63334925 - B2_Mm2 SINE B2 -5 190 2 4 1265 625 229 150 21 chr5 89202389 89202496 -63334763 - Charlie1a DNA MER1_type -4 1451 1323 4 1265 605 153 45 116 chr5 89202496 89202651 -63334608 + B1_Mur4 SINE Alu 1 144 -6 4 1265 625 229 150 21 chr5 89202651 89202869 -63334390 - Charlie1a DNA MER1_type -133 1322 1084 4 1265 256 286 0 0 chr5 89202900 89202956 -63334303 - Charlie1a DNA MER1_type -1399 56 1 4 1265 1051 226 15 0 chr5 89203355 89203554 -63333705 + B3 SINE B2 6 207 -9 4 1265 1430 141 81 17 chr5 89203554 89203817 -63333442 + Lx4A LINE L1 6741 7022 -36 4 1265 351 0 0 0 chr5 89203817 89203856 -63333403 + (GGGTG)n Simple_repeat Simple_repeat 3 41 0 4 1265 1430 141 81 17 chr5 89203856 89203887 -63333372 + Lx4A LINE L1 7023 7053 -5 4 1265 333 0 0 0 chr5 89204475 89204512 -63332747 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1265 326 247 65 9 chr5 89204619 89204726 -63332533 - B4A SINE B4 -48 244 132 4 1265 870 182 0 0 chr5 89204836 89204984 -63332275 - B1_Mur2 SINE Alu 0 149 2 4 1265 424 199 26 123 chr5 89205263 89205418 -63331841 - MER3 DNA MER1_type -32 177 38 4 1265 292 377 123 33 chr5 89206250 89206615 -63330644 + Tigger7 DNA MER2_type 39 436 -2055 4 1265 198 0 0 0 chr5 89206635 89206657 -63330602 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 4 1265 460 110 0 14 chr5 89206657 89206721 -63330538 - B1_Mm SINE Alu -9 138 75 4 1265 403 282 48 8 chr5 89206769 89206894 -63330365 + Tigger7 DNA MER2_type 2362 2491 0 4 1265 254 349 0 46 chr5 89207056 89207143 -63330116 - ID4 SINE ID 0 83 1 4 1265 1245 96 0 0 chr5 89207649 89207827 -63329432 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 4 1265 387 0 0 0 chr5 89207832 89207875 -63329384 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1265 671 217 51 26 chr5 89208797 89208985 -63328274 - B3 SINE B2 -14 181 1 5 1265 1176 57 0 0 chr5 89209025 89209166 -63328093 - B1_Mus1 SINE Alu -6 142 2 5 1265 636 262 5 83 chr5 89209178 89209382 -63327877 - B3A SINE B2 -10 188 1 5 1265 552 243 192 6 chr5 89209636 89209818 -63327441 + B3 SINE B2 1 216 0 5 1265 221 214 129 0 chr5 89210809 89210879 -63326380 - ID4_ SINE ID -3 80 2 5 1265 703 164 12 93 chr5 89211201 89211362 -63325897 - B1_Mur2 SINE Alu -1 148 1 5 1265 242 219 85 0 chr5 89212349 89212431 -63324828 - L1MC LINE L1 -1098 5048 4960 5 1265 235 298 85 0 chr5 89212610 89212704 -63324555 - PB1D10 SINE Alu -15 102 1 5 1265 401 300 206 21 chr5 89212708 89213277 -63323982 - L1MC LINE L1 -1452 4694 4021 5 1265 421 232 62 48 chr5 89213260 89213405 -63323854 + L1MA9 LINE L1 5793 5939 -373 5 1265 362 181 74 11 chr5 89213433 89213528 -63323731 + L1MA9 LINE L1 5998 6098 -193 5 1265 1319 103 22 0 chr5 89213531 89213716 -63323543 - B2_Mm2 SINE B2 -6 189 1 5 1265 618 227 109 35 chr5 89213838 89214039 -63323220 - B3 SINE B2 0 216 1 5 1265 714 189 53 13 chr5 89214191 89214341 -63322918 - MTE2b LTR MaLR -5 374 219 5 1265 313 226 117 11 chr5 89214808 89214902 -63322357 - PB1D7 SINE Alu -11 109 6 5 1265 332 216 11 54 chr5 89214824 89214917 -63322342 - MT2B LTR ERVL -354 247 159 5 1265 367 308 41 21 chr5 89214988 89215266 -63321993 + L1MA4 LINE L1 3439 3720 -2420 5 1265 446 231 165 19 chr5 89215266 89215527 -63321732 + L1MA4 LINE L1 4746 5044 -1099 5 1265 363 267 28 65 chr5 89215562 89215670 -63321589 - PB1D10 SINE Alu -7 110 7 5 1265 373 306 127 28 chr5 89215677 89215929 -63321330 + L1MA4 LINE L1 5091 5367 -776 5 1265 558 288 43 62 chr5 89215929 89216140 -63321119 + B3 SINE B2 1 207 -9 5 1265 345 251 150 6 chr5 89216152 89216428 -63320831 + L1MA4 LINE L1 5365 5691 -489 5 1265 300 252 194 0 chr5 89216444 89216583 -63320676 + L1MA4 LINE L1 5759 5924 -379 5 1265 405 0 0 0 chr5 89216849 89216894 -63320365 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1265 245 317 0 0 chr5 89217001 89217061 -63320198 + ID2 SINE ID 23 82 -1 5 1265 767 32 0 0 chr5 89217103 89217196 -63320063 + L1Md_F2 LINE L1 5494 5586 -297 5 1265 8102 42 2 4 chr5 89217196 89218193 -63319066 + L1Md_F2 LINE L1 5587 6581 -1 5 1265 415 308 46 8 chr5 89218230 89218361 -63318898 + B1_Mur1 SINE Alu 6 141 -8 5 1265 290 225 0 16 chr5 89218498 89218567 -63318692 + PB1D10 SINE Alu 57 125 -2 5 1265 181 260 40 0 chr5 89218757 89218807 -63318452 - L2c LINE L2 0 3387 3336 5 1265 180 0 0 0 chr5 89219135 89219155 -63318104 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1265 239 242 14 70 chr5 89219161 89219232 -63318027 - B4 SINE B4 -1 291 225 5 1265 449 120 59 1 chr5 89219222 89219311 -63317948 + B2_Mm2 SINE B2 92 183 -12 5 1265 515 169 189 7 chr5 89219468 89219611 -63317648 - Lx LINE L1 -7 7051 6883 5 1265 339 284 71 35 chr5 89219730 89219843 -63317416 + L1M2 LINE L1 5033 5149 -994 5 1265 418 292 219 5 chr5 89219858 89220054 -63317205 + ORR1D2 LTR MaLR 108 345 -25 5 1265 2011 171 20 15 chr5 89220242 89220639 -63316620 - Lx LINE L1 -14 6640 6242 5 1265 419 246 204 0 chr5 89220684 89220841 -63316418 - B3A SINE B2 -31 185 1 5 1265 361 299 77 35 chr5 89220841 89221011 -63316248 + MTEa LTR MaLR 85 261 -118 5 1265 254 339 0 0 chr5 89221184 89221249 -63316010 + LTR84b LTR ERVL 113 177 -584 5 1265 1500 49 5 0 chr5 89221296 89221480 -63315779 - B2_Mm1a SINE B2 -8 185 1 5 1265 591 53 0 0 chr5 89221890 89221965 -63315294 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 1265 276 30 0 0 chr5 89221965 89221997 -63315262 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1265 276 305 88 12 chr5 89222012 89222198 -63315061 + MIRc SINE MIR 69 265 -3 5 1265 326 241 12 37 chr5 89222485 89222567 -63314692 + RSINE1 SINE B4 53 132 -33 5 1265 234 0 0 0 chr5 89222577 89222603 -63314656 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 5 1265 360 64 0 0 chr5 89222757 89222804 -63314455 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1265 201 347 97 17 chr5 89224695 89224871 -63312388 + L2c LINE L2 3077 3266 -121 5 1265 437 202 50 42 chr5 89226548 89226667 -63310592 + PB1D9 SINE Alu 1 120 0 5 1265 200 237 0 33 chr5 89226681 89226742 -63310517 + A-rich Low_complexity Low_complexity 1 59 0 5 1265 264 30 0 0 chr5 89226746 89226779 -63310480 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1265 386 269 32 0 chr5 89226971 89227064 -63310195 - RSINE1 SINE B4 -17 148 53 5 1265 270 300 80 26 chr5 89227096 89227209 -63310050 - MLT1I LTR MaLR -253 158 40 5 1265 1090 73 0 0 chr5 89227238 89227374 -63309885 - B1_Mus1 SINE Alu -11 137 2 5 1265 253 222 0 73 chr5 89227769 89227837 -63309422 + Lx8 LINE L1 7404 7466 -7 5 1265 284 243 7 0 chr5 89228370 89228518 -63308741 + (CA)n Simple_repeat Simple_repeat 1 149 0 5 1265 759 148 0 0 chr5 89228537 89228686 -63308573 + (CA)n Simple_repeat Simple_repeat 1 149 0 5 1265 397 316 19 13 chr5 89229167 89229321 -63307938 - RSINE1 SINE B4 -10 155 1 5 1265 422 343 35 25 chr5 89229452 89229655 -63307604 - B4A SINE B4 -2 290 86 5 1265 423 0 0 0 chr5 89229663 89229710 -63307549 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 5 1265 886 78 0 58 chr5 89229711 89229902 -63307357 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1265 202 21 106 0 chr5 89229905 89229952 -63307307 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 5 1265 1190 96 11 0 chr5 89229952 89230130 -63307129 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 5 1265 194 329 113 21 chr5 89230480 89230719 -63306540 + L2a LINE L2 3114 3374 -52 5 1265 241 236 11 22 chr5 89231308 89231399 -63305860 + GA-rich Low_complexity Low_complexity 3 92 0 5 1265 425 119 0 0 chr5 89232318 89232385 -63304874 + RMER10B LTR ERVL 1 67 -331 5 1265 29 0 0 0 chr5 89232470 89232499 -63304760 + AT_rich Low_complexity Low_complexity 1 29 0 5 1265 371 282 0 26 chr5 89232521 89232634 -63304625 - L1M2 LINE L1 -531 5769 5660 5 1265 1503 58 16 0 chr5 89234257 89234446 -63302813 - B2_Mm2 SINE B2 -3 192 1 5 1265 871 217 39 0 chr5 89234490 89234693 -63302566 - B3 SINE B2 0 216 6 5 1265 393 75 0 0 chr5 89237612 89237665 -63299594 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1265 1094 185 15 0 chr5 89237828 89238033 -63299226 - B3 SINE B2 0 216 9 5 1265 24 0 0 0 chr5 89238040 89238064 -63299195 + AT_rich Low_complexity Low_complexity 1 24 0 5 1265 440 317 102 62 chr5 89238409 89238665 -63298594 + B4 SINE B4 3 268 -24 5 1265 261 0 0 0 chr5 89239351 89239380 -63297879 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1265 511 270 48 0 chr5 89239683 89239809 -63297450 + B1_Mur1 SINE Alu 1 132 -17 5 1265 498 202 0 0 chr5 89240966 89241060 -63296199 - ID_B1 SINE B4 -2 222 129 5 1265 565 152 92 39 chr5 89241522 89241652 -63295607 - B1_Mur2 SINE Alu -11 138 2 5 1265 186 43 0 0 chr5 89241770 89241793 -63295466 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 5 1265 180 0 0 0 chr5 89242497 89242517 -63294742 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1265 194 0 39 0 chr5 89244164 89244190 -63293069 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1265 672 192 31 25 chr5 89244914 89245074 -63292185 + HAL1-2a_MD LINE L1 2347 2507 -517 5 1265 435 167 0 0 chr5 89245091 89245181 -63292078 + (CCA)n Simple_repeat Simple_repeat 3 92 0 5 1265 580 221 17 29 chr5 89245184 89245356 -63291903 + HAL1-2a_MD LINE L1 2350 2519 -505 5 1265 401 243 13 67 chr5 89245362 89245492 -63291767 + HAL1-2a_MD LINE L1 2345 2465 -559 5 1265 1261 34 0 0 chr5 89245492 89245639 -63291620 - B1_Mm SINE Alu 0 147 1 5 1265 401 243 13 67 chr5 89245639 89245658 -63291601 + HAL1-2a_MD LINE L1 2466 2486 -538 5 1265 582 63 0 0 chr5 89245670 89245749 -63291510 + (TCCC)n Simple_repeat Simple_repeat 4 82 0 5 1265 225 83 0 0 chr5 89245749 89245784 -63291475 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 5 1265 521 265 221 28 chr5 89245807 89246534 -63290725 - L1M4c LINE L1 -3884 2500 1545 5 1265 254 106 21 0 chr5 89246620 89246667 -63290592 + (TATG)n Simple_repeat Simple_repeat 3 50 0 5 1265 292 272 131 36 chr5 89246695 89246942 -63290317 - B4A SINE B4 -20 272 3 5 1265 384 279 53 20 chr5 89247037 89247187 -63290072 - L1M4c LINE L1 -5478 906 752 5 1265 333 118 0 0 chr5 89247187 89247238 -63290021 + (A)n Simple_repeat Simple_repeat 1 51 0 5 1265 298 243 159 57 chr5 89247238 89247395 -63289864 - L1M4c LINE L1 -5628 756 584 5 1265 643 306 139 20 chr5 89247423 89247717 -63289542 - MTEb LTR MaLR -43 336 8 5 1265 729 34 0 0 chr5 89247749 89247837 -63289422 + (TTC)n Simple_repeat Simple_repeat 2 89 0 5 1265 2848 77 8 13 chr5 89247843 89248238 -63289021 - L1_Mus3 LINE L1 -6 6632 6240 5 1265 287 289 56 0 chr5 89248436 89248526 -63288733 + B1F SINE Alu 36 130 -19 5 1265 285 98 0 0 chr5 89248536 89248577 -63288682 + (CTAAA)n Simple_repeat Simple_repeat 5 45 0 5 1265 270 0 0 0 chr5 89248651 89248681 -63288578 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1265 254 294 47 0 chr5 89248870 89248955 -63288304 + MER81 DNA AcHobo 1 89 -25 5 1265 442 278 83 61 chr5 89249856 89250036 -63287223 - B3A SINE B2 -3 195 12 5 1265 422 304 74 12 chr5 89250612 89250775 -63286484 + AmnSINE1 SINE SINE 222 394 -181 5 1265 198 0 0 0 chr5 89250895 89250917 -63286342 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1265 3182 70 2 0 chr5 89251130 89251529 -63285730 - MTB LTR MaLR 0 400 1 5 1265 419 302 15 96 chr5 89251985 89252183 -63285076 - B4A SINE B4 -2 290 109 5 1265 812 312 85 110 chr5 89252480 89253361 -63283898 - MER63C DNA AcHobo -6 924 66 5 1265 297 0 0 0 chr5 89253381 89253414 -63283845 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1265 21 89 0 0 chr5 89253517 89253573 -63283686 + AT_rich Low_complexity Low_complexity 1 56 0 5 1265 183 216 0 0 chr5 89254360 89254397 -63282862 + L2 LINE L2 2824 2860 -559 5 1265 677 195 22 14 chr5 89254397 89254767 -63282492 + CT-rich Low_complexity Low_complexity 1 373 0 6 1265 281 182 0 0 chr5 89254786 89254841 -63282418 + B3A SINE B2 1 55 -143 6 1265 397 235 28 19 chr5 89255271 89255393 -63281866 - PB1D7 SINE Alu -26 123 12 6 1265 854 131 92 29 chr5 89255495 89255668 -63281591 - ORR1B1 LTR MaLR 0 394 211 6 1265 495 71 313 17 chr5 89255666 89255781 -63281478 - B2_Mm2 SINE B2 0 195 47 6 1265 1124 97 11 17 chr5 89255837 89256016 -63281243 - B2_Mm1t SINE B2 -14 179 2 6 1265 1245 176 9 5 chr5 89256017 89256239 -63281020 - ORR1B1 LTR MaLR -171 223 1 6 1265 244 365 44 13 chr5 89256304 89256462 -63280797 + Charlie7 DNA MER1_type 515 677 -1935 6 1265 723 264 25 19 chr5 89256677 89256839 -63280420 - RSINE1 SINE B4 0 165 3 6 1265 464 286 166 4 chr5 89256923 89257200 -63280059 - Arthur1 DNA Tip100 -258 3689 3368 6 1265 574 269 201 20 chr5 89257214 89257517 -63279742 - Arthur1 DNA Tip100 -2873 1074 717 6 1265 413 211 141 0 chr5 89257600 89257742 -63279517 - Lx9 LINE L1 -6 7638 7477 6 1265 24 0 0 0 chr5 89259516 89259540 -63277719 + AT_rich Low_complexity Low_complexity 1 24 0 6 1265 22 35 0 0 chr5 89259663 89259692 -63277567 + AT_rich Low_complexity Low_complexity 1 29 0 6 1266 237 272 11 80 chr5 89260921 89261009 -63276250 - MLT1G LTR MaLR -296 295 214 6 1266 671 236 129 37 chr5 89262536 89262831 -63274428 - L1MA8 LINE L1 -53 6238 5917 6 1266 267 31 0 0 chr5 89263707 89263739 -63273520 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 6 1266 1137 123 84 0 chr5 89264542 89264721 -63272538 - B2_Mm2 SINE B2 0 195 2 6 1266 934 194 67 10 chr5 89264822 89265030 -63272229 + URR1A DNA MER1_type 3 222 -4 6 1266 29 0 0 0 chr5 89265350 89265379 -63271880 + AT_rich Low_complexity Low_complexity 1 29 0 6 1266 1286 77 16 42 chr5 89265522 89265712 -63271547 - B2_Mm2 SINE B2 -8 187 3 6 1266 255 275 14 14 chr5 89266372 89266442 -63270817 + PB1D9 SINE Alu 3 72 -48 6 1266 1592 127 14 28 chr5 89266527 89266810 -63270449 - ORR1A4 LTR MaLR -8 321 43 6 1266 209 200 0 0 chr5 89268310 89268345 -63268914 + (CTG)n Simple_repeat Simple_repeat 3 37 0 6 1266 248 259 17 0 chr5 89269776 89269834 -63267425 - MIR3 SINE MIR -3 205 147 6 1266 839 176 25 83 chr5 89269880 89269916 -63267343 - L1_Mus1 LINE L1 -13 6625 6590 6 1266 4437 4 0 0 chr5 89269916 89270397 -63266862 - L1Md_A LINE L1 0 6582 6102 6 1266 6773 66 6 13 chr5 89270397 89271265 -63265994 - L1_Mus1 LINE L1 -49 6589 5686 6 1266 1265 57 6 0 chr5 89273391 89273566 -63263693 + (CA)n Simple_repeat Simple_repeat 2 177 0 6 1266 329 236 14 52 chr5 89273713 89273825 -63263434 - L1M5 LINE L1 -344 5818 5709 6 1266 476 45 30 0 chr5 89273947 89274013 -63263246 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 6 1266 1224 101 0 0 chr5 89274018 89274196 -63263063 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 6 1266 444 202 34 0 chr5 89274202 89274291 -63262968 - B1F SINE Alu -17 132 41 6 1266 213 39 0 0 chr5 89275468 89275494 -63261765 + (CAT)n Simple_repeat Simple_repeat 1 26 0 6 1266 1287 219 132 54 chr5 89275550 89275723 -63261536 - MTD LTR MaLR 0 419 225 6 1266 180 0 0 0 chr5 89275723 89275743 -63261516 + (CTTG)n Simple_repeat Simple_repeat 3 22 0 6 1266 1287 219 132 54 chr5 89275743 89275888 -63261371 - MTD LTR MaLR -195 224 66 6 1266 4879 82 20 2 chr5 89275888 89276474 -63260785 + L1_Mus1 LINE L1 5911 6496 -71 6 1266 216 0 0 0 chr5 89276474 89276498 -63260761 + (TGGG)n Simple_repeat Simple_repeat 4 27 0 6 1266 4879 82 20 2 chr5 89276498 89276556 -63260703 + L1_Mus1 LINE L1 6497 6567 0 6 1266 1287 219 132 54 chr5 89276556 89276623 -63260636 - MTD LTR MaLR -354 65 4 6 1266 255 274 48 0 chr5 89276628 89276712 -63260547 - MTD-int LTR MaLR -3 1255 1168 6 1266 454 184 110 0 chr5 89276729 89276838 -63260421 - B3 SINE B2 -5 211 91 6 1266 868 213 243 18 chr5 89276847 89277114 -63260145 - MTD-int LTR MaLR -889 369 43 6 1266 1450 207 68 21 chr5 89277130 89277466 -63259793 - MTD LTR MaLR 0 419 68 6 1266 25 0 0 0 chr5 89277466 89277491 -63259768 + AT_rich Low_complexity Low_complexity 1 25 0 6 1266 8175 69 8 6 chr5 89277494 89278638 -63258621 - L1_Mus3 LINE L1 -2 6636 5479 6 1266 247 217 0 0 chr5 89278651 89278711 -63258548 + L1_Mur3 LINE L1 1651 1710 -4170 6 1266 7675 81 5 0 chr5 89278799 89279875 -63257384 - L1_Mus1 LINE L1 0 6567 5487 6 1266 392 210 108 20 chr5 89279875 89279977 -63257282 - MTD LTR MaLR -308 111 1 6 1266 324 219 92 20 chr5 89280019 89280117 -63257142 - PB1D10 SINE Alu -1 116 12 6 1266 192 158 0 0 chr5 89280472 89280510 -63256749 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1266 840 271 23 9 chr5 89280752 89280972 -63256287 + ID_B1 SINE B4 2 224 0 6 1266 2186 111 51 6 chr5 89281665 89282018 -63255241 - Lx2 LINE L1 -2 6995 6627 6 1266 22 35 0 0 chr5 89282298 89282327 -63254932 + AT_rich Low_complexity Low_complexity 1 29 0 6 1266 215 309 35 23 chr5 89285171 89285257 -63252002 + MIRm SINE MIR 163 249 -27 6 1266 212 346 0 0 chr5 89285835 89285887 -63251372 - MIRb SINE MIR -190 78 27 6 1266 363 317 14 14 chr5 89287183 89287327 -63249932 + MER58A DNA MER1_type 80 223 -1 6 1266 513 278 56 31 chr5 89287351 89287511 -63249748 - RSINE1 SINE B4 0 165 2 6 1266 586 216 63 28 chr5 89287777 89287920 -63249339 + B1_Mur2 SINE Alu 2 149 0 6 1266 498 86 0 0 chr5 89287927 89288008 -63249251 + (CAAAC)n Simple_repeat Simple_repeat 2 82 0 6 1266 180 0 0 0 chr5 89288056 89288076 -63249183 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1266 953 238 9 0 chr5 89288245 89288459 -63248800 + B3 SINE B2 1 216 0 6 1266 21 0 0 0 chr5 89288466 89288487 -63248772 + AT_rich Low_complexity Low_complexity 1 21 0 6 1266 1391 75 37 11 chr5 89288777 89288967 -63248292 - B2_Mm2 SINE B2 0 195 1 6 1266 207 175 17 34 chr5 89289497 89289556 -63247703 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 6 1266 648 297 164 25 chr5 89289655 89290087 -63247172 - MLT1G LTR MaLR -55 536 45 6 1266 591 99 69 0 chr5 89290384 89290485 -63246774 + MTD LTR MaLR 2 109 -310 6 1266 1443 34 0 0 chr5 89290493 89290670 -63246589 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 6 1266 3290 188 155 105 chr5 89290700 89290802 -63246457 - RMER1A Other Other -6 1024 871 6 1266 1428 57 0 0 chr5 89290802 89291082 -63246177 + (CCA)n Simple_repeat Simple_repeat 1 280 0 6 1266 3290 194 139 97 chr5 89291082 89292077 -63245182 - RMER1A Other Other -160 870 3 6 1266 1255 194 72 28 chr5 89292078 89292155 -63245104 + MTD LTR MaLR 101 197 -222 6 1266 2909 51 30 0 chr5 89292155 89292525 -63244734 + L1Md_F3 LINE L1 6190 6570 -14 6 1266 1255 194 72 28 chr5 89292525 89292738 -63244521 + MTD LTR MaLR 198 404 -15 6 1266 3021 165 48 18 chr5 89293053 89293610 -63243649 - RMER15 LTR ERVL -1 574 1 6 1266 2317 300 83 55 chr5 89294202 89296055 -63241204 + L1_Mur3 LINE L1 1203 3158 -2689 6 1266 370 256 90 30 chr5 89296185 89296318 -63240941 - MLT1A1 LTR MaLR 0 408 268 6 1266 251 290 0 14 chr5 89296337 89296407 -63240852 + G-rich Low_complexity Low_complexity 1 69 0 6 1266 192 77 0 0 chr5 89296411 89296437 -63240822 + (TAGA)n Simple_repeat Simple_repeat 3 28 0 6 1266 237 356 107 17 chr5 89296579 89296868 -63240391 + L2a LINE L2 2766 3080 -339 6 1266 209 340 73 26 chr5 89297005 89297156 -63240103 + L2a LINE L2 3267 3424 -2 6 1266 450 233 0 85 chr5 89297491 89297632 -63239627 - RSINE1 SINE B4 -33 132 4 6 1266 201 94 0 0 chr5 89298021 89298053 -63239206 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1266 41865 10 1 6 chr5 89298055 89304619 -63232640 - L1Md_A LINE L1 -1 6581 53 6 1266 21 57 0 0 chr5 89304656 89304691 -63232568 + AT_rich Low_complexity Low_complexity 1 35 0 6 1266 509 283 70 7 chr5 89304887 89305063 -63232196 + B3 SINE B2 31 216 0 6 1266 353 218 0 25 chr5 89305059 89305139 -63232120 + ID_B1 SINE B4 142 219 -5 6 1266 431 238 0 0 chr5 89305147 89305227 -63232032 + ID4_ SINE ID 3 82 -1 6 1266 417 279 144 10 chr5 89305427 89305708 -63231551 - L1M4 LINE L1 -5257 2077 1759 6 1266 926 134 24 6 chr5 89305880 89306045 -63231214 + B2_Mm2 SINE B2 1 168 -27 6 1266 182 37 0 36 chr5 89306199 89306227 -63231032 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 6 1266 935 286 61 3 chr5 89306227 89306357 -63230902 - MTE2b LTR MaLR -67 312 179 6 1266 186 43 0 0 chr5 89306357 89306380 -63230879 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1266 935 286 61 3 chr5 89306380 89306544 -63230715 - MTE2b LTR MaLR -201 178 2 6 1266 575 219 6 17 chr5 89307420 89307601 -63229658 + CT-rich Low_complexity Low_complexity 2 180 0 6 1266 416 189 103 21 chr5 89308317 89308414 -63228845 - B1F1 SINE Alu 0 149 45 6 1266 577 70 11 11 chr5 89310238 89310325 -63226934 - B2_Mm2 SINE B2 -106 89 3 6 1266 747 290 4 74 chr5 89310438 89310695 -63226564 + B4 SINE B4 4 242 -50 6 1266 447 78 0 0 chr5 89310697 89310761 -63226498 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1266 518 0 16 0 chr5 89311197 89311259 -63226000 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1266 660 48 0 0 chr5 89312026 89312110 -63225149 + (TC)n Simple_repeat Simple_repeat 1 84 0 6 1266 1868 150 105 34 chr5 89312462 89312842 -63224417 - MTB_Mm LTR MaLR 0 407 1 6 1266 306 241 58 0 chr5 89313496 89313583 -63223676 - BC1_Mm scRNA scRNA -53 99 8 6 1266 406 207 198 0 chr5 89313608 89313729 -63223530 - B1F SINE Alu -2 147 3 6 1266 393 22 0 0 chr5 89314876 89314922 -63222337 + (GGAAA)n Simple_repeat Simple_repeat 4 49 0 6 1266 22 56 0 0 chr5 89315734 89315770 -63221489 + GC_rich Low_complexity Low_complexity 1 36 0 6 1266 26 74 0 0 chr5 89316167 89316221 -63221038 + GC_rich Low_complexity Low_complexity 1 54 0 6 1266 336 133 0 0 chr5 89316229 89316289 -63220970 + (CGG)n Simple_repeat Simple_repeat 2 61 0 6 1266 468 0 0 0 chr5 89316472 89316524 -63220735 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1266 677 329 64 39 chr5 89320480 89320964 -63216295 - L1ME3A LINE L1 -5 6168 5673 6 1266 279 0 0 0 chr5 89322091 89322122 -63215137 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 6 1266 234 0 0 0 chr5 89322947 89322973 -63214286 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1266 1062 111 15 78 chr5 89323049 89323255 -63214004 - B2_Mm2 SINE B2 -1 194 2 7 1266 2061 219 35 60 chr5 89323590 89323678 -63213581 - RLTR20C LTR ERVK 0 534 446 7 1266 441 0 0 0 chr5 89323678 89323727 -63213532 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1266 2061 219 35 60 chr5 89323727 89324186 -63213073 - RLTR20C LTR ERVK -89 445 3 7 1266 367 241 50 61 chr5 89324980 89325161 -63212098 - B3A SINE B2 -16 182 4 7 1266 738 251 74 15 chr5 89325666 89325868 -63211391 + B3 SINE B2 1 214 -2 7 1266 904 267 25 32 chr5 89326713 89326995 -63210264 + B4A SINE B4 1 280 -12 7 1266 423 0 0 0 chr5 89327044 89327091 -63210168 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1266 498 17 0 0 chr5 89327120 89327179 -63210080 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 1266 2597 20 3 3 chr5 89328555 89328856 -63208403 + L1Md_F2 LINE L1 6282 6582 0 7 1266 549 223 0 0 chr5 89329595 89329725 -63207534 + (TA)n Simple_repeat Simple_repeat 2 131 0 7 1266 431 274 18 0 chr5 89329835 89329948 -63207311 - B3A SINE B2 -83 115 1 7 1266 1113 98 110 0 chr5 89329969 89330132 -63207127 - B2_Mm2 SINE B2 -14 181 1 7 1266 1729 184 83 28 chr5 89330669 89331066 -63206193 + MTD LTR MaLR 1 419 0 7 1266 398 143 11 0 chr5 89331393 89331484 -63205775 + GA-rich Low_complexity Low_complexity 1 92 0 7 1266 180 0 0 0 chr5 89331517 89331537 -63205722 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1266 935 191 39 0 chr5 89331538 89331716 -63205543 - B3 SINE B2 -28 188 4 7 1266 297 0 0 0 chr5 89332690 89332723 -63204536 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1266 280 341 75 25 chr5 89332740 89333023 -63204236 - B4 SINE B4 -11 281 2 7 1266 734 83 0 8 chr5 89333568 89333689 -63203570 + (TTTC)n Simple_repeat Simple_repeat 4 123 0 7 1266 322 277 85 3 chr5 89333690 89333865 -63203394 - L1MA4 LINE L1 -125 6175 5986 7 1266 180 77 0 0 chr5 89334466 89334492 -63202767 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1266 23 0 0 0 chr5 89335013 89335036 -63202223 + AT_rich Low_complexity Low_complexity 1 23 0 7 1266 229 170 94 0 chr5 89335039 89335092 -63202167 - Lx8 LINE L1 -29 7444 7387 7 1266 676 238 81 189 chr5 89335802 89335922 -63201337 - ORR1D1 LTR MaLR 0 374 260 7 1266 443 18 18 0 chr5 89335922 89335978 -63201281 + (CAGG)n Simple_repeat Simple_repeat 3 59 0 7 1266 676 238 81 189 chr5 89335978 89336276 -63200983 - ORR1D1 LTR MaLR -115 259 3 7 1266 347 226 155 0 chr5 89336281 89336365 -63200894 - B1F1 SINE Alu -52 97 1 7 1266 1095 184 14 14 chr5 89336766 89336976 -63200283 - B3 SINE B2 -6 210 1 7 1266 301 240 58 4 chr5 89337738 89337818 -63199441 - L1MA4 LINE L1 -382 5918 5802 7 1266 28 29 0 0 chr5 89338548 89338583 -63198676 + AT_rich Low_complexity Low_complexity 1 35 0 7 1266 438 283 8 0 chr5 89338642 89338762 -63198497 + B3A SINE B2 2 122 -76 7 1266 252 143 0 0 chr5 89338822 89338864 -63198395 + (CATG)n Simple_repeat Simple_repeat 3 44 0 7 1266 388 257 76 83 chr5 89339151 89339459 -63197800 - BGLII_B LTR ERVK -189 338 1 7 1266 626 281 110 5 chr5 89340052 89340270 -63196989 - B4 SINE B4 -2 290 50 7 1266 2340 102 12 0 chr5 89340828 89341151 -63196108 - ORR1A2 LTR MaLR 0 327 1 7 1266 306 0 0 0 chr5 89342022 89342056 -63195203 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1266 182 128 26 0 chr5 89342243 89342282 -63194977 + T-rich Low_complexity Low_complexity 1 40 0 7 1266 3926 61 24 2 chr5 89342303 89342812 -63194447 - L1_Mus3 LINE L1 -4 6634 6115 7 1266 299 316 0 25 chr5 89342848 89342929 -63194330 - PB1D10 SINE Alu 0 117 39 7 1266 418 294 35 42 chr5 89343216 89343358 -63193901 - B1F SINE Alu 0 149 9 7 1266 330 332 68 32 chr5 89343551 89343772 -63193487 + MLT1A LTR MaLR 133 361 -13 7 1266 213 174 11 44 chr5 89346188 89346278 -63190981 + G-rich Low_complexity Low_complexity 2 88 0 7 1266 312 327 50 45 chr5 89347174 89347353 -63189906 - Tigger16b DNA Tigger 0 337 158 7 1266 238 296 181 14 chr5 89347376 89347520 -63189739 + MIRb SINE MIR 48 215 -53 7 1266 1020 50 0 0 chr5 89347929 89348068 -63189191 + (TG)n Simple_repeat Simple_repeat 2 140 0 7 1266 688 179 0 0 chr5 89348071 89348194 -63189065 - RSINE1 SINE B4 -40 125 3 7 1266 1550 6 6 0 chr5 89348211 89348390 -63188869 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1266 1022 126 0 6 chr5 89348390 89348558 -63188701 + (TCC)n Simple_repeat Simple_repeat 3 169 0 7 1266 674 102 5 64 chr5 89348538 89348726 -63188533 + CT-rich Low_complexity Low_complexity 2 178 0 7 1266 236 157 39 0 chr5 89348736 89348787 -63188472 + C-rich Low_complexity Low_complexity 5 57 0 7 1266 442 299 99 22 chr5 89349100 89349322 -63187937 + B4A SINE B4 3 241 -51 7 1266 4973 112 66 6 chr5 89349349 89350140 -63187119 - Lx2 LINE L1 0 6997 6160 7 1266 480 35 0 0 chr5 89350623 89350681 -63186578 + (TATG)n Simple_repeat Simple_repeat 3 60 0 7 1266 648 124 0 0 chr5 89351641 89351746 -63185513 + (TC)n Simple_repeat Simple_repeat 2 106 0 7 1266 1181 208 18 33 chr5 89351857 89352130 -63185129 - Lx6 LINE L1 -64 7396 7128 7 1266 651 294 48 14 chr5 89352414 89352761 -63184498 - L1_Mur3 LINE L1 -782 5515 5152 7 1266 285 273 94 66 chr5 89352770 89352876 -63184383 - PB1D10 SINE Alu 0 117 9 7 1266 845 311 51 9 chr5 89352942 89353389 -63183870 + L1MA4A LINE L1 5560 6023 -277 7 1266 1012 306 183 18 chr5 89353624 89354252 -63183007 + Lx8 LINE L1 6736 7467 -6 7 1266 206 274 0 16 chr5 89354605 89354668 -63182591 + MIRb SINE MIR 193 254 -14 7 1266 516 32 0 0 chr5 89355288 89355350 -63181909 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1266 1121 296 100 35 chr5 89356760 89357278 -63179981 - L1MD2 LINE L1 -178 6181 5630 7 1266 195 114 0 0 chr5 89357880 89357915 -63179344 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1266 189 333 0 0 chr5 89360409 89360466 -63176793 + L2a LINE L2 3355 3411 -15 7 1266 205 318 11 11 chr5 89361041 89361130 -63176129 + L2 LINE L2 2772 2860 -559 7 1266 189 302 35 0 chr5 89361171 89361257 -63176002 + L2 LINE L2 2989 3077 -342 7 1266 263 67 0 43 chr5 89361413 89361460 -63175799 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 7 1266 279 224 154 26 chr5 89361810 89361888 -63175371 - 5S rRNA rRNA -33 88 1 7 1266 524 184 20 10 chr5 89362100 89362199 -63175060 - RSINE1 SINE B4 -63 102 3 7 1266 253 309 17 70 chr5 89362296 89362411 -63174848 - MIRb SINE MIR -96 172 64 7 1266 21 0 0 0 chr5 89364060 89364081 -63173178 + AT_rich Low_complexity Low_complexity 1 21 0 7 1266 361 245 109 30 chr5 89367221 89367322 -63169937 + PB1D10 SINE Alu 7 115 -2 7 1266 703 272 92 64 chr5 89372196 89372270 -63164989 - B4A SINE B4 0 292 222 7 1266 1396 88 16 0 chr5 89372270 89372452 -63164807 - B2_Mm2 SINE B2 -10 185 1 7 1266 703 272 92 64 chr5 89372452 89372660 -63164599 - B4A SINE B4 -71 221 2 7 1266 613 240 0 30 chr5 89372680 89372813 -63164446 - B1F SINE Alu -17 132 4 7 1266 1236 73 0 0 chr5 89372992 89373225 -63164034 + (TG)n Simple_repeat Simple_repeat 1 233 0 7 1266 270 325 39 13 chr5 89373410 89373563 -63163696 - L2 LINE L2 -984 2435 2279 7 1266 897 106 40 7 chr5 89373581 89373733 -63163526 + URR1A DNA MER1_type 70 226 0 7 1266 204 207 17 33 chr5 89376145 89376205 -63161054 + (CAT)n Simple_repeat Simple_repeat 2 60 0 7 1266 426 20 0 0 chr5 89376356 89376407 -63160852 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1266 388 283 49 81 chr5 89376464 89376687 -63160572 - B4A SINE B4 -76 216 1 7 1266 291 20 19 56 chr5 89377813 89377867 -63159392 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 7 1266 2861 72 8 3 chr5 89377922 89378300 -63158959 + L1_Mus4 LINE L1 6252 6631 -5 7 1266 306 0 0 0 chr5 89378379 89378413 -63158846 + (CCA)n Simple_repeat Simple_repeat 1 34 0 7 1266 331 253 149 75 chr5 89378584 89378772 -63158487 - B4A SINE B4 -1 291 90 7 1266 33 25 0 0 chr5 89379760 89379800 -63157459 + AT_rich Low_complexity Low_complexity 1 40 0 7 1266 356 254 73 86 chr5 89380262 89380413 -63156846 + B4A SINE B4 73 221 -71 7 1266 942 90 0 0 chr5 89380286 89380419 -63156840 + B1_Mus2 SINE Alu 15 147 0 7 1266 321 89 0 0 chr5 89380419 89380464 -63156795 + (A)n Simple_repeat Simple_repeat 1 45 0 7 1266 210 216 0 0 chr5 89380646 89380683 -63156576 + polypurine Low_complexity Low_complexity 3 39 0 7 1266 904 149 11 0 chr5 89380684 89380858 -63156401 + GA-rich Low_complexity Low_complexity 2 177 0 7 1266 239 289 80 22 chr5 89381039 89381052 -63156207 + L1MB7 LINE L1 6018 6031 -148 7 1266 198 0 0 0 chr5 89381052 89381074 -63156185 + (GA)n Simple_repeat Simple_repeat 1 22 0 7 1266 367 275 75 1 chr5 89381074 89381198 -63156061 + L1MB7 LINE L1 6032 6167 -17 7 1266 462 49 0 0 chr5 89381581 89381642 -63155617 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1266 534 133 0 0 chr5 89381848 89381938 -63155321 + (TG)n Simple_repeat Simple_repeat 1 90 0 7 1266 602 241 49 6 chr5 89383256 89383419 -63153840 + ID_B1 SINE B4 55 224 0 7 1266 320 193 0 35 chr5 89385358 89385471 -63151788 + C-rich Low_complexity Low_complexity 2 110 0 7 1266 453 125 10 30 chr5 89385529 89385628 -63151631 + GA-rich Low_complexity Low_complexity 3 99 0 7 1266 387 41 0 0 chr5 89385758 89385807 -63151452 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1266 436 311 69 63 chr5 89385981 89386156 -63151103 - ID_B1 SINE B4 -17 207 32 7 1266 180 375 66 8 chr5 89386917 89387038 -63150221 + L2 LINE L2 2952 3079 -340 7 1266 203 190 17 0 chr5 89388946 89389004 -63148255 + CT-rich Low_complexity Low_complexity 2 60 0 7 1266 492 72 0 0 chr5 89389394 89389463 -63147796 + (TG)n Simple_repeat Simple_repeat 1 69 0 8 1266 376 260 150 0 chr5 89389499 89389626 -63147633 - RSINE1 SINE B4 -16 149 4 8 1267 480 77 0 0 chr5 89392034 89392099 -63145160 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 1267 1769 217 123 28 chr5 89392381 89392913 -63144346 + Lx9 LINE L1 7063 7644 0 8 1267 264 229 131 0 chr5 89393614 89393675 -63143584 + ID4_ SINE ID 5 73 -10 8 1267 538 26 38 13 chr5 89393680 89393759 -63143500 + (CAAAA)n Simple_repeat Simple_repeat 2 82 0 8 1267 315 0 0 0 chr5 89394243 89394278 -63142981 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8 1267 26 0 0 0 chr5 89396136 89396162 -63141097 + AT_rich Low_complexity Low_complexity 1 26 0 8 1267 774 107 119 193 chr5 89396392 89396520 -63140739 - URR1A DNA MER1_type 0 226 137 8 1267 4956 46 2 7 chr5 89396520 89397127 -63140132 - L1Md_F2 LINE L1 0 6582 5979 8 1267 774 107 119 193 chr5 89397127 89397242 -63140017 - URR1A DNA MER1_type -90 136 1 8 1267 1133 140 111 39 chr5 89398872 89399080 -63138179 + URR1A DNA MER1_type 4 226 0 8 1267 195 42 0 0 chr5 89399471 89399495 -63137764 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1267 711 259 114 0 chr5 89399770 89399971 -63137288 - ID_B1 SINE B4 0 224 1 8 1267 432 0 0 0 chr5 89400814 89400862 -63136397 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1267 502 297 122 8 chr5 89401203 89401441 -63135818 - L4 LINE RTE -107 1922 1658 8 1267 807 272 151 25 chr5 89401460 89401777 -63135482 - MTD LTR MaLR -10 409 53 8 1267 202 285 28 134 chr5 89401978 89402120 -63135139 - MIRb SINE MIR -122 146 20 8 1267 236 226 143 16 chr5 89402158 89402221 -63135038 + MER2B DNA MER2_type 6 76 -260 8 1267 499 206 10 10 chr5 89402352 89402450 -63134809 + MER2B DNA MER2_type 239 336 0 8 1267 365 318 77 20 chr5 89402602 89402831 -63134428 - MIRb SINE MIR -21 241 9 8 1267 318 50 0 0 chr5 89402971 89403011 -63134248 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1267 197 368 27 34 chr5 89403282 89403431 -63133828 - L4 LINE RTE -1190 839 692 8 1267 290 294 105 46 chr5 89403472 89403625 -63133634 - MIR SINE MIR -35 227 66 8 1267 183 360 67 0 chr5 89403907 89403996 -63133263 - L4 LINE RTE -1683 346 252 8 1267 330 293 21 73 chr5 89404019 89404231 -63133028 + MIRb SINE MIR 45 247 -21 8 1267 195 300 0 0 chr5 89404522 89404572 -63132687 + MIR3 SINE MIR 144 193 -15 8 1267 495 291 213 29 chr5 89406071 89406631 -63130628 - L1ME3 LINE L1 -214 6145 5489 8 1267 595 252 28 14 chr5 89406636 89406781 -63130478 - B1F1 SINE Alu -2 147 1 8 1267 226 308 0 0 chr5 89406783 89406835 -63130424 + polypyrimidine Low_complexity Low_complexity 3 54 0 8 1267 310 229 143 71 chr5 89406949 89407174 -63130085 - L1ME3 LINE L1 -808 5434 5191 8 1267 408 291 73 11 chr5 89407166 89407343 -63129916 - L1MA8 LINE L1 0 6312 6125 8 1267 21 36 0 0 chr5 89407343 89407371 -63129888 + AT_rich Low_complexity Low_complexity 1 28 0 8 1267 5734 39 0 0 chr5 89407371 89408042 -63129217 - L1Md_F2 LINE L1 0 6582 5912 8 1267 974 272 134 34 chr5 89408058 89409048 -63128211 - L1MA8 LINE L1 -254 6037 4933 8 1267 364 304 35 30 chr5 89409026 89409226 -63128033 - L1ME3 LINE L1 -915 5231 5031 8 1267 239 242 0 70 chr5 89409238 89409309 -63127950 + ID SINE ID 12 77 -147 8 1267 539 321 53 26 chr5 89411262 89411489 -63125770 - L3 LINE CR1 -122 4367 4135 8 1267 2405 151 5 17 chr5 89411741 89412153 -63125106 - MTB_Mm LTR MaLR 0 407 1 8 1267 234 59 0 0 chr5 89413645 89413679 -63123580 - B3 SINE B2 -182 34 1 8 1267 989 167 166 5 chr5 89414055 89414260 -63122999 - Lx4B LINE L1 -4 7054 6817 8 1267 297 265 27 81 chr5 89414416 89414527 -63122732 - MIR SINE MIR -151 111 7 8 1267 462 211 11 0 chr5 89415294 89415389 -63121870 + PB1D10 SINE Alu 1 96 -21 8 1267 7601 15 0 0 chr5 89415727 89416577 -63120682 + L1Md_T LINE L1 4737 5586 -297 8 1267 8179 56 0 0 chr5 89416577 89417594 -63119665 + L1Md_T LINE L1 5587 6582 0 8 1267 1548 20 0 61 chr5 89417594 89417826 -63119433 + L1Md_F2 LINE L1 6382 6582 0 8 1267 339 44 0 0 chr5 89418404 89418449 -63118810 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 8 1267 237 98 0 0 chr5 89420924 89420965 -63116294 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 8 1267 22 35 0 0 chr5 89422305 89422334 -63114925 + AT_rich Low_complexity Low_complexity 1 29 0 8 1267 540 45 0 0 chr5 89424103 89424170 -63113089 + (TA)n Simple_repeat Simple_repeat 1 67 0 8 1267 276 100 0 0 chr5 89425343 89425383 -63111876 + (T)n Simple_repeat Simple_repeat 1 40 0 8 1267 270 0 0 0 chr5 89425771 89425801 -63111458 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1267 488 268 87 24 chr5 89425813 89425939 -63111320 - RSINE1 SINE B4 -28 137 4 8 1267 30 0 0 0 chr5 89427431 89427461 -63109798 + AT_rich Low_complexity Low_complexity 1 30 0 8 1267 249 33 0 0 chr5 89427461 89427491 -63109768 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1267 512 234 56 16 chr5 89427500 89427626 -63109633 - RSINE1 SINE B4 -33 132 2 8 1267 5271 91 12 6 chr5 89428066 89428794 -63108465 - Lx3C LINE L1 -629 6347 5615 8 1267 3004 24 0 0 chr5 89429934 89430271 -63106988 - IAPLTR1a_Mm LTR ERVK 0 337 1 8 1267 56075 23 20 7 chr5 89430271 89436662 -63100597 - IAPEz-int LTR ERVK 0 6481 8 8 1267 3052 15 0 0 chr5 89436662 89436999 -63100260 - IAPLTR1a_Mm LTR ERVK 0 337 1 8 1267 1221 43 26 9 chr5 89437275 89437705 -63099554 + (TCTA)n Simple_repeat Simple_repeat 1 437 0 8 1267 441 218 117 31 chr5 89440052 89440180 -63097079 + ID_B1 SINE B4 76 214 -10 8 1267 232 146 18 35 chr5 89440192 89440249 -63097010 + (CAA)n Simple_repeat Simple_repeat 2 57 0 8 1267 1517 97 4 13 chr5 89440305 89440535 -63096724 - Lx LINE L1 0 6654 6427 8 1267 269 92 191 0 chr5 89440535 89440605 -63096654 - Lx2 LINE L1 -354 6643 6556 8 1267 241 281 52 10 chr5 89443675 89443772 -63093487 - MLT1A1 LTR MaLR -30 378 278 8 1267 330 331 141 33 chr5 89443794 89443978 -63093281 - MLT1A1 LTR MaLR -204 204 1 8 1267 24 32 0 0 chr5 89444334 89444365 -63092894 + AT_rich Low_complexity Low_complexity 1 31 0 8 1267 759 244 6 43 chr5 89444412 89444575 -63092684 - RSINE1 SINE B4 -4 161 5 8 1267 225 0 0 0 chr5 89445935 89445960 -63091299 + (TC)n Simple_repeat Simple_repeat 2 26 0 8 1267 236 236 120 33 chr5 89446310 89446402 -63090857 + LTR88b LTR Gypsy? 661 760 -77 8 1267 225 59 38 38 chr5 89446693 89446746 -63090513 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 8 1267 440 352 158 57 chr5 89446843 89447262 -63089997 - MLT1K LTR MaLR -110 485 25 8 1267 342 218 45 11 chr5 89447523 89447611 -63089648 + PB1D10 SINE Alu 26 116 -1 8 1267 952 238 19 24 chr5 89448364 89448575 -63088684 - B3 SINE B2 -6 210 1 8 1267 691 306 108 32 chr5 89448721 89449035 -63088224 + MER2 DNA MER2_type 8 345 0 8 1267 26 30 0 0 chr5 89450147 89450180 -63087079 + AT_rich Low_complexity Low_complexity 1 33 0 8 1267 26 0 0 0 chr5 89450233 89450259 -63087000 + AT_rich Low_complexity Low_complexity 1 26 0 8 1267 364 266 101 6 chr5 89450295 89450454 -63086805 - Lx8 LINE L1 -9 7464 7291 8 1267 227 250 0 0 chr5 89450456 89450496 -63086763 - Lx8 LINE L1 -146 7327 7288 8 1267 1106 291 16 16 chr5 89450692 89451013 -63086246 - Lx8 LINE L1 -151 7322 7002 8 1267 225 283 0 0 chr5 89451171 89451224 -63086035 - Lx7 LINE L1 -689 7007 6955 8 1267 246 220 0 0 chr5 89451224 89451283 -63085976 + (ATGGTG)n Simple_repeat Simple_repeat 4 62 0 8 1267 497 241 6 0 chr5 89451290 89451460 -63085799 + (TGG)n Simple_repeat Simple_repeat 3 173 0 8 1267 929 220 139 43 chr5 89451471 89451751 -63085508 - Lx8 LINE L1 -527 6946 6640 8 1267 323 359 60 0 chr5 89452780 89452897 -63084362 - MIR SINE MIR -118 144 21 8 1267 250 224 0 0 chr5 89453367 89453425 -63083834 + (TCTG)n Simple_repeat Simple_repeat 2 59 0 8 1267 455 209 216 9 chr5 89453437 89453553 -63083706 - B1_Mur2 SINE Alu -9 140 1 8 1267 218 283 65 75 chr5 89454052 89454159 -63083100 + L2a LINE L2 3321 3426 0 8 1267 412 294 94 49 chr5 89454323 89454631 -63082628 - Tigger6a DNA MER2_type -59 1024 703 8 1267 1483 305 53 32 chr5 89454684 89455253 -63082006 - Tigger6a DNA MER2_type -502 581 1 8 1267 961 291 14 55 chr5 89455504 89455795 -63081464 - B4A SINE B4 -13 279 1 8 1267 287 239 15 15 chr5 89455812 89455880 -63081379 - ID4 SINE ID -15 68 1 8 1267 245 289 115 26 chr5 89455893 89456127 -63081132 - L1M5 LINE L1 -305 5819 5565 8 1267 321 26 0 0 chr5 89456405 89456443 -63080816 + (TA)n Simple_repeat Simple_repeat 2 39 0 8 1267 226 262 0 71 chr5 89458824 89458894 -63078365 - MT2B2 LTR ERVL -323 261 197 8 1267 451 215 0 0 chr5 89458836 89458931 -63078328 - PB1D7 SINE Alu -52 97 3 8 1267 279 350 0 28 chr5 89458931 89458942 -63078317 - ID_B1 SINE B4 -49 175 73 8 1267 417 326 103 13 chr5 89459581 89459814 -63077445 + L2a LINE L2 2480 2733 -686 8 1267 207 363 117 6 chr5 89460039 89460219 -63077040 + L2a LINE L2 3189 3388 -38 8 1267 277 190 103 0 chr5 89460628 89460686 -63076573 - ID4 SINE ID -9 74 11 8 1267 552 227 88 29 chr5 89461360 89461496 -63075763 + ID_B1 SINE B4 81 224 0 8 1267 527 290 21 8 chr5 89463489 89463655 -63073604 - MLT1A0 LTR MaLR 0 408 223 8 1267 525 266 28 0 chr5 89463695 89463804 -63073455 + PB1D7 SINE Alu 1 112 -8 8 1267 1152 194 95 4 chr5 89463980 89464244 -63073015 - Lx5 LINE L1 -604 6446 6159 8 1267 4996 167 41 25 chr5 89466208 89467165 -63070094 - Lx3C LINE L1 -2 6974 6003 8 1267 200 268 0 0 chr5 89468011 89468067 -63069192 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1267 949 281 25 18 chr5 89468069 89468355 -63068904 - B4 SINE B4 -2 290 3 8 1267 23 0 0 0 chr5 89468755 89468778 -63068481 + AT_rich Low_complexity Low_complexity 1 23 0 8 1267 1237 251 19 106 chr5 89468954 89469369 -63067890 - MTE2a LTR MaLR 0 379 1 8 1267 21 0 0 0 chr5 89470682 89470703 -63066556 + AT_rich Low_complexity Low_complexity 1 21 0 8 1267 771 224 0 0 chr5 89470958 89471137 -63066122 + (TA)n Simple_repeat Simple_repeat 1 179 0 8 1267 539 275 24 152 chr5 89471493 89471828 -63065431 - B4A SINE B4 0 292 1 8 1267 302 301 92 35 chr5 89472368 89472509 -63064750 - B1F SINE Alu 0 149 1 8 1267 233 263 98 29 chr5 89473695 89473797 -63063462 + MLT1J-int LTR MaLR 1243 1351 -36 8 1267 246 160 0 0 chr5 89473844 89473894 -63063365 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1267 697 278 95 71 chr5 89473898 89474181 -63063078 - B4A SINE B4 -2 290 1 9 1267 2293 53 3 66 chr5 89474371 89474675 -63062584 + L1_Mus2 LINE L1 6282 6566 0 9 1267 1381 62 38 38 chr5 89475742 89475927 -63061332 - B2_Mm2 SINE B2 -6 189 5 9 1267 1387 307 69 60 chr5 89477866 89478692 -63058567 + MER63C DNA AcHobo 1 833 -97 9 1267 785 162 54 48 chr5 89478681 89478694 -63058565 - B2_Mm2 SINE B2 -25 170 162 9 1267 369 0 0 0 chr5 89478694 89478735 -63058524 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 9 1267 785 162 54 48 chr5 89478735 89478889 -63058370 - B2_Mm2 SINE B2 -34 161 2 9 1267 25 0 0 0 chr5 89479085 89479110 -63058149 + AT_rich Low_complexity Low_complexity 1 25 0 9 1267 186 133 0 0 chr5 89479783 89479813 -63057446 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1267 480 81 0 0 chr5 89479837 89479911 -63057348 + (CA)n Simple_repeat Simple_repeat 2 75 0 9 1267 836 192 0 0 chr5 89479913 89480059 -63057200 - RMER10B LTR ERVL -52 346 201 9 1267 1142 56 7 0 chr5 89482849 89482992 -63054267 + L1_Mus1 LINE L1 6420 6563 -4 9 1267 669 271 128 31 chr5 89483102 89483563 -63053696 - L1MA7 LINE L1 -22 6269 5660 9 1267 528 93 0 0 chr5 89486288 89486363 -63050896 + (GA)n Simple_repeat Simple_repeat 2 76 0 9 1267 222 294 129 0 chr5 89488006 89488091 -63049168 - L2c LINE L2 -42 3384 3268 9 1267 268 300 22 22 chr5 89488436 89488528 -63048731 - MIR SINE MIR -92 170 79 9 1267 354 309 117 22 chr5 89488723 89488902 -63048357 + MIRb SINE MIR 38 233 -35 9 1267 312 102 0 0 chr5 89490584 89490633 -63046626 + (TCTG)n Simple_repeat Simple_repeat 1 49 0 9 1267 184 156 0 0 chr5 89493129 89493161 -63044098 - L4 LINE RTE -315 1714 1683 9 1267 639 288 25 35 chr5 89493238 89493436 -63043823 - B3A SINE B2 -1 197 2 9 1267 518 282 134 30 chr5 89493495 89493696 -63043563 + MER58A DNA MER1_type 1 222 -2 9 1267 224 30 0 29 chr5 89493830 89493864 -63043395 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 9 1267 1236 62 7 0 chr5 89493867 89494013 -63043246 - B1_Mus2 SINE Alu 0 147 1 9 1267 346 306 156 78 chr5 89494013 89494200 -63043059 + Charlie1 DNA MER1_type 2421 2642 -139 9 1267 372 43 0 0 chr5 89494200 89494246 -63043013 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 9 1267 346 306 156 78 chr5 89494246 89494330 -63042929 + Charlie1 DNA MER1_type 2643 2716 -65 9 1267 432 0 0 0 chr5 89494339 89494387 -63042872 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1267 917 281 22 25 chr5 89494387 89494655 -63042604 - B4A SINE B4 -23 269 2 9 1267 346 306 156 78 chr5 89494655 89494715 -63042544 + Charlie1 DNA MER1_type 2717 2779 -2 9 1267 297 303 0 9 chr5 89496767 89496877 -63040382 - Lx9 LINE L1 -5 7639 7531 9 1267 539 257 138 19 chr5 89497025 89497235 -63040024 + MLT1I LTR MaLR 1 235 -176 9 1267 785 269 40 5 chr5 89499474 89499676 -63037583 + ID_B1 SINE B4 1 209 -15 9 1267 269 208 0 13 chr5 89499788 89499866 -63037393 + C-rich Low_complexity Low_complexity 5 81 0 9 1267 247 306 16 0 chr5 89499898 89499960 -63037299 - ID SINE ID -154 70 8 9 1267 401 324 0 9 chr5 89500000 89500109 -63037150 - ID_B1 SINE B4 -26 198 91 1 1267 235 261 0 0 chr5 89500918 89500964 -63036295 + ID4 SINE ID 29 74 -9 2 1267 279 79 0 0 chr5 89501258 89501296 -63035963 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1267 456 211 66 19 chr5 89501963 89502069 -63035190 - PB1D10 SINE Alu -1 116 6 4 1267 480 233 42 102 chr5 89502704 89502871 -63034388 - RSINE1 SINE B4 -5 160 4 5 1267 432 0 0 0 chr5 89503423 89503471 -63033788 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1267 25 83 0 0 chr5 89503847 89503907 -63033352 + AT_rich Low_complexity Low_complexity 1 60 0 7 1267 252 81 0 0 chr5 89505294 89505324 -63031935 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1267 1293 20 7 0 chr5 89505324 89505470 -63031789 - B1_Mus2 SINE Alu 0 147 1 9 1267 252 81 0 0 chr5 89505470 89505476 -63031783 + (T)n Simple_repeat Simple_repeat 1 6 0 1 1267 7932 68 4 1 chr5 89505480 89506647 -63030612 - L1_Mus1 LINE L1 0 6567 5399 1 1267 324 0 0 0 chr5 89506653 89506689 -63030570 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1267 516 81 35 0 chr5 89506689 89506776 -63030483 + (GA)n Simple_repeat Simple_repeat 2 91 0 1 1267 1113 170 229 32 chr5 89508248 89508527 -63028732 - MTB LTR MaLR -51 349 16 1 1267 1692 185 39 14 chr5 89509066 89509501 -63027758 + RMER17C LTR ERVK 16 439 -519 1 1267 378 268 50 20 chr5 89509759 89509858 -63027401 - PB1D10 SINE Alu -3 114 13 1 1267 199 152 77 115 chr5 89510743 89510795 -63026464 - MER5A DNA MER1_type -41 148 99 1 1267 648 97 0 0 chr5 89510933 89511026 -63026233 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1267 329 316 38 43 chr5 89511197 89511382 -63025877 - MER5A DNA MER1_type -2 187 4 1 1267 21 0 0 0 chr5 89512334 89512355 -63024904 + AT_rich Low_complexity Low_complexity 1 21 0 1 1267 225 55 53 53 chr5 89512818 89512856 -63024403 - LTR65 LTR ERV1 -250 419 382 2 1267 1169 259 14 65 chr5 89514392 89514685 -63022574 + B4A SINE B4 15 292 0 2 1267 626 238 0 4 chr5 89514685 89514934 -63022325 + (CA)n Simple_repeat Simple_repeat 1 248 0 2 1267 183 222 0 0 chr5 89514987 89515032 -63022227 + (CATATA)n Simple_repeat Simple_repeat 1 45 0 2 1267 234 239 32 32 chr5 89515089 89515184 -63022075 + (CATA)n Simple_repeat Simple_repeat 4 98 0 2 1267 359 155 95 0 chr5 89515185 89515269 -63021990 + HAL1-3A_ME LINE L1 1976 2067 -791 2 1267 3149 63 19 43 chr5 89515732 89516146 -63021113 + L1Md_F2 LINE L1 6167 6570 -12 2 1267 569 156 18 0 chr5 89518064 89518173 -63019086 + CT-rich Low_complexity Low_complexity 1 111 0 2 1267 1104 100 0 0 chr5 89518177 89518337 -63018922 + (TTTC)n Simple_repeat Simple_repeat 2 161 0 2 1267 399 41 0 0 chr5 89519533 89519582 -63017677 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1267 1317 37 137 0 chr5 89519647 89519808 -63017451 + B2_Mm1t SINE B2 2 184 -9 3 1267 411 21 0 0 chr5 89519897 89519945 -63017314 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1267 1768 260 71 27 chr5 89519952 89520572 -63016687 - Lx9 LINE L1 -175 7469 6823 3 1267 395 323 141 8 chr5 89520700 89520780 -63016479 + Lx9 LINE L1 6103 6184 -1289 3 1267 432 0 0 0 chr5 89520780 89520828 -63016431 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1267 559 274 127 6 chr5 89520828 89521003 -63016256 + Lx9 LINE L1 6185 6534 -1110 3 1267 979 202 197 104 chr5 89521003 89521466 -63015793 - MT2A LTR ERVL 0 533 28 3 1267 535 331 57 12 chr5 89521469 89521717 -63015542 + Lx9 LINE L1 6531 6789 -855 3 1268 221 299 94 85 chr5 89522309 89522510 -63014749 - L2 LINE L2 -351 3068 2866 3 1268 188 254 119 0 chr5 89522600 89522667 -63014592 - MIR SINE MIR -26 236 162 3 1268 186 143 0 0 chr5 89523119 89523154 -63014105 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 3 1268 294 115 0 0 chr5 89523184 89523236 -63014023 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 1268 821 270 102 28 chr5 89523289 89523544 -63013715 - B4A SINE B4 -18 274 1 4 1268 987 106 143 0 chr5 89525562 89525723 -63011536 - B2_Mm2 SINE B2 -10 185 2 4 1268 902 313 29 18 chr5 89526318 89526598 -63010661 - B4A SINE B4 -8 284 2 4 1268 427 193 365 57 chr5 89527732 89527891 -63009368 - B3 SINE B2 -6 210 3 4 1268 200 125 25 0 chr5 89528155 89528195 -63009064 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 4 1268 1007 142 0 39 chr5 89528199 89528353 -63008906 - B1_Mur3 SINE Alu 0 149 2 4 1268 908 118 0 5 chr5 89529718 89529923 -63007336 + (TC)n Simple_repeat Simple_repeat 1 203 0 4 1268 230 309 25 0 chr5 89530334 89530415 -63006844 + ID4 SINE ID 1 83 0 4 1268 215 375 112 12 chr5 89530972 89531142 -63006117 + L2c LINE L2 2980 3166 -221 4 1268 414 0 0 0 chr5 89531179 89531225 -63006034 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1268 441 180 0 0 chr5 89531250 89531378 -63005881 + (CA)n Simple_repeat Simple_repeat 2 129 0 4 1268 338 74 33 100 chr5 89531378 89531438 -63005821 + HAL1-3A_ME LINE L1 1976 2031 -827 5 1268 533 124 103 0 chr5 89533826 89533946 -63003313 + L1Md_A LINE L1 6460 6582 0 5 1268 492 324 26 15 chr5 89534362 89534575 -63002684 - MIRb SINE MIR -45 223 7 5 1268 214 302 119 40 chr5 89535924 89536113 -63001146 + MIR SINE MIR 29 242 -26 5 1268 243 329 26 13 chr5 89536782 89536859 -63000400 - ID4_ SINE ID -5 78 1 5 1268 306 0 0 0 chr5 89537725 89537759 -62999500 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1268 278 296 73 65 chr5 89537969 89538092 -62999167 - MER94 DNA AcHobo -7 127 4 5 1268 203 311 128 35 chr5 89540795 89540998 -62996261 - L2a LINE L2 0 3426 3205 5 1268 36082 46 1 3 chr5 89541008 89546234 -62991025 + L1Md_T LINE L1 278 5589 -297 5 1268 9019 32 0 0 chr5 89546234 89547228 -62990031 + L1Md_T LINE L1 5590 6583 -2 5 1268 794 314 92 60 chr5 89547525 89548023 -62989236 - L2a LINE L2 -665 2754 2241 5 1268 287 177 0 16 chr5 89549030 89549093 -62988166 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 5 1268 208 139 61 37 chr5 89549200 89549282 -62987977 + (TATAA)n Simple_repeat Simple_repeat 3 86 0 6 1268 216 0 0 0 chr5 89552896 89552920 -62984339 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1268 336 94 0 0 chr5 89553306 89553359 -62983900 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1268 387 0 0 0 chr5 89553872 89553915 -62983344 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1268 261 188 45 13 chr5 89553918 89554074 -62983185 + (TA)n Simple_repeat Simple_repeat 2 162 0 6 1268 336 102 0 0 chr5 89554100 89554149 -62983110 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1268 189 0 0 0 chr5 89555148 89555169 -62982090 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 6 1268 1532 64 21 5 chr5 89555275 89555464 -62981795 + B2_Mm2 SINE B2 1 192 -3 6 1268 288 0 0 0 chr5 89557491 89557523 -62979736 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1268 893 271 85 8 chr5 89558249 89558509 -62978750 + B4A SINE B4 1 280 -12 6 1268 318 26 0 0 chr5 89558525 89558564 -62978695 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1268 189 0 0 0 chr5 89558819 89558840 -62978419 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 7 1268 476 260 37 15 chr5 89559103 89559273 -62977986 + L1MA6 LINE L1 6033 6221 -79 7 1268 1442 231 36 91 chr5 89560407 89560792 -62976467 - ORR1D2 LTR MaLR 0 370 7 7 1268 432 0 0 0 chr5 89560927 89560975 -62976284 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1268 345 312 0 24 chr5 89560977 89561059 -62976200 - RSINE1 SINE B4 -15 150 71 7 1268 256 335 205 16 chr5 89562406 89562718 -62974541 - L2a LINE L2 -6 3420 3050 7 1268 249 272 56 113 chr5 89564063 89564258 -62973001 + L2a LINE L2 3196 3379 -47 7 1268 185 0 0 39 chr5 89565526 89565552 -62971707 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 7 1268 375 230 167 45 chr5 89566010 89566142 -62971117 - MLT1G LTR MaLR -198 393 246 7 1268 1557 287 87 12 chr5 89566763 89567349 -62969910 - Lx8 LINE L1 -7 7466 6837 8 1268 396 0 0 0 chr5 89567586 89567630 -62969629 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1268 238 207 0 94 chr5 89567655 89567679 -62969580 - BC1_Mm scRNA scRNA -93 59 41 8 1268 2507 154 47 7 chr5 89567679 89568084 -62969175 - MTC LTR MaLR 0 421 1 8 1268 238 207 0 94 chr5 89568084 89568123 -62969136 - BC1_Mm scRNA scRNA -112 40 2 8 1268 252 306 14 0 chr5 89568883 89568955 -62968304 - L2a LINE L2 0 3426 3354 8 1268 1382 14 23 0 chr5 89569439 89569657 -62967602 + (TCTA)n Simple_repeat Simple_repeat 1 223 0 8 1268 550 235 87 0 chr5 89570416 89570531 -62966728 + PB1 SINE Alu 1 125 -2 8 1268 264 317 12 24 chr5 89570540 89570624 -62966635 + BC1_Mm scRNA scRNA 2 84 -68 8 1268 517 310 29 82 chr5 89571396 89571702 -62965557 + B4A SINE B4 3 292 0 8 1268 240 335 105 0 chr5 89572225 89572377 -62964882 - L1M5 LINE L1 -456 5668 5501 8 1268 241 283 108 0 chr5 89572724 89572844 -62964415 - L1M5 LINE L1 -1048 5098 4966 8 1268 342 0 0 0 chr5 89573475 89573513 -62963746 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1268 645 278 12 30 chr5 89573516 89573683 -62963576 - B3 SINE B2 -52 164 1 9 1268 229 297 137 42 chr5 89573758 89573853 -62963406 + ID_B1 SINE B4 110 213 -11 9 1268 324 0 0 0 chr5 89573853 89573889 -62963370 + (CA)n Simple_repeat Simple_repeat 2 37 0 9 1268 306 176 324 0 chr5 89575002 89575070 -62962189 + URR1A DNA MER1_type 1 90 -136 9 1268 1467 47 62 0 chr5 89575070 89575263 -62961996 - BGLII LTR ERVK 0 421 217 9 1268 831 113 68 40 chr5 89575258 89575406 -62961853 + URR1A DNA MER1_type 75 226 0 9 1268 230 315 84 32 chr5 89575788 89575883 -62961376 - MIR SINE MIR -93 115 16 9 1268 369 43 0 0 chr5 89577396 89577443 -62959816 + (CAG)n Simple_repeat Simple_repeat 1 47 0 9 1268 934 278 29 32 chr5 89577494 89577773 -62959486 + Lx8 LINE L1 7180 7457 -16 9 1268 249 108 0 0 chr5 89578465 89578502 -62958757 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 9 1268 225 325 45 67 chr5 89578703 89578792 -62958467 + LTR33 LTR ERVL 55 141 -374 1 1268 743 261 167 50 chr5 89579550 89579885 -62957374 - ORR1E LTR MaLR 0 379 6 1 1268 21 36 0 0 chr5 89579993 89580021 -62957238 + AT_rich Low_complexity Low_complexity 1 28 0 1 1268 236 152 106 71 chr5 89580423 89580508 -62956751 + Charlie4 DNA MER1_type 1220 1307 -654 1 1268 249 377 16 66 chr5 89581235 89581357 -62955902 + B1F SINE Alu 3 118 -31 1 1268 440 149 0 11 chr5 89581357 89581445 -62955814 - L1Md_F2 LINE L1 0 6582 6496 1 1268 4394 26 4 0 chr5 89581445 89582079 -62955180 - L1Md_F2 LINE L1 -577 6005 5370 1 1268 381 305 126 0 chr5 89582489 89582663 -62954596 - MLT2B4 LTR ERVL -356 200 5 1 1268 257 303 97 15 chr5 89582855 89582989 -62954270 - L2 LINE L2 -539 2880 2736 1 1268 519 60 0 0 chr5 89583373 89583440 -62953819 + (ATG)n Simple_repeat Simple_repeat 1 67 0 1 1268 1290 360 52 28 chr5 89584265 89584883 -62952376 - Lx8 LINE L1 -244 7229 6592 1 1268 576 42 0 0 chr5 89584883 89584954 -62952305 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1 1268 1290 360 52 28 chr5 89584954 89585098 -62952161 - Lx8 LINE L1 -882 6591 6450 1 1268 558 194 0 37 chr5 89586255 89586442 -62950817 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1268 189 229 0 0 chr5 89586441 89586489 -62950770 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1268 564 267 38 104 chr5 89587408 89587726 -62949533 - MT2B LTR ERVL -2 599 146 1 1268 213 39 0 0 chr5 89588018 89588044 -62949215 + (GGGAGA)n Simple_repeat Simple_repeat 3 28 0 1 1268 333 282 45 74 chr5 89588309 89588416 -62948843 + MIR SINE MIR 75 183 -79 1 1268 444 257 19 9 chr5 89588416 89588522 -62948737 + PB1D10 SINE Alu 1 107 -10 1 1268 333 282 45 74 chr5 89588522 89588590 -62948669 + MIR SINE MIR 184 245 -17 1 1268 1926 160 104 3 chr5 89588850 89589195 -62948064 - ORR1C2 LTR MaLR 0 384 5 1 1268 497 312 7 7 chr5 89589261 89589403 -62947856 + B1_Mur1 SINE Alu 2 143 -6 1 1268 1258 61 0 0 chr5 89589413 89589560 -62947699 + B1_Mus2 SINE Alu 1 147 0 1 1268 288 137 0 0 chr5 89589560 89589611 -62947648 + (A)n Simple_repeat Simple_repeat 1 51 0 1 1268 1121 264 103 30 chr5 89590109 89590476 -62946783 - Lx8 LINE L1 -2 7471 7078 1 1268 2211 260 90 3 chr5 89590500 89591067 -62946192 - Lx8 LINE L1 -663 6810 6195 1 1268 576 0 0 0 chr5 89591068 89591132 -62946127 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1268 202 194 0 0 chr5 89591132 89591168 -62946091 + CT-rich Low_complexity Low_complexity 3 38 0 1 1268 952 179 0 0 chr5 89591194 89591339 -62945920 - B1_Mus1 SINE Alu -2 146 2 1 1268 21 0 0 0 chr5 89591340 89591361 -62945898 + AT_rich Low_complexity Low_complexity 1 21 0 1 1268 705 259 117 20 chr5 89591525 89591722 -62945537 - B3 SINE B2 0 216 1 1 1268 249 33 0 0 chr5 89592245 89592275 -62944984 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1268 22 35 0 0 chr5 89593512 89593541 -62943718 + AT_rich Low_complexity Low_complexity 1 29 0 1 1268 1208 77 6 0 chr5 89594544 89594713 -62942546 + (TTC)n Simple_repeat Simple_repeat 2 171 0 1 1268 3083 42 14 3 chr5 89594713 89595070 -62942189 - L1_Mus1 LINE L1 -4 6563 6203 1 1268 3333 81 2 2 chr5 89595070 89595515 -62941744 + L1_Mm LINE L1 4183 4627 -1256 1 1268 330 67 0 0 chr5 89596930 89596975 -62940284 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1268 378 203 16 0 chr5 89597615 89597679 -62939580 - ID_B1 SINE B4 -33 191 127 1 1268 236 292 15 30 chr5 89597716 89597783 -62939476 - ID2 SINE ID -16 67 2 1 1268 2370 124 76 19 chr5 89597825 89598194 -62939065 - ORR1B1 LTR MaLR 0 394 5 1 1268 255 61 0 0 chr5 89599142 89599175 -62938084 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1268 441 0 0 0 chr5 89600706 89600755 -62936504 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1268 21 0 0 0 chr5 89600987 89601008 -62936251 + AT_rich Low_complexity Low_complexity 1 21 0 1 1268 1456 82 16 5 chr5 89602284 89602469 -62934790 + B2_Mm2 SINE B2 1 187 -8 1 1268 1134 157 136 0 chr5 89602678 89602876 -62934383 - URR1B DNA MER1_type 0 225 1 1 1268 25 31 0 0 chr5 89603408 89603440 -62933819 + AT_rich Low_complexity Low_complexity 1 32 0 1 1268 482 287 80 6 chr5 89604149 89604324 -62932935 + MER53 DNA hAT 6 193 0 1 1268 516 304 122 47 chr5 89606663 89606918 -62930341 - LTR16A1 LTR ERVL -19 437 164 1 1268 7000 48 31 7 chr5 89606977 89607808 -62929451 + L1Md_F2 LINE L1 5731 6581 -1 1 1268 681 137 0 0 chr5 89609942 89610073 -62927186 + (CA)n Simple_repeat Simple_repeat 2 132 0 1 1268 893 252 169 11 chr5 89610507 89610868 -62926391 - L1MA8 LINE L1 0 7251 6834 1 1268 2138 60 98 21 chr5 89610875 89611162 -62926097 + L1Md_F2 LINE L1 6273 6581 -1 1 1268 24 53 0 0 chr5 89611252 89611290 -62925969 + AT_rich Low_complexity Low_complexity 1 38 0 1 1268 1454 280 59 43 chr5 89611552 89612116 -62925143 - L1MA8 LINE L1 -424 6827 6242 1 1268 4239 97 47 2 chr5 89612116 89612728 -62924531 - Lx2A LINE L1 -1 7007 6368 1 1268 1454 247 94 74 chr5 89612728 89613650 -62923609 - L1MA8 LINE L1 -862 6241 5313 1 1268 319 315 18 86 chr5 89613636 89613962 -62923297 - Lx8 LINE L1 -8 7465 7162 1 1268 253 244 101 77 chr5 89613961 89614170 -62923089 - L1MA8 LINE L1 -1775 5328 5115 1 1268 261 272 12 0 chr5 89614163 89614244 -62923015 - L1MA8 LINE L1 -6289 741 660 1 1268 432 346 60 30 chr5 89614262 89614759 -62922500 - L1MA8 LINE L1 -6514 516 5 1 1268 290 354 86 134 chr5 89615565 89615871 -62921388 - LTR33 LTR ERVL -6 509 206 1 1268 252 0 0 0 chr5 89615871 89615899 -62921360 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 1 1268 290 354 86 134 chr5 89615899 89616048 -62921211 - LTR33 LTR ERVL -310 205 77 1 1268 271 0 51 0 chr5 89620040 89620079 -62917180 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1268 1200 57 0 0 chr5 89620110 89620267 -62916992 + MTB_Mm LTR MaLR 1 157 -250 1 1268 264 288 25 0 chr5 89621054 89621134 -62916125 + (TA)n Simple_repeat Simple_repeat 2 83 0 1 1268 519 302 96 34 chr5 89621248 89621457 -62915802 - MLT1D LTR MaLR -83 422 201 1 1268 284 271 14 0 chr5 89621454 89621524 -62915735 - B1F SINE Alu -22 127 57 1 1268 210 261 87 119 chr5 89621777 89621903 -62915356 - L2 LINE L2 -931 2488 2367 1 1268 296 317 10 19 chr5 89622390 89622493 -62914766 - MARNA DNA Mariner -197 389 288 1 1268 273 326 8 0 chr5 89622513 89622642 -62914617 + L1M5 LINE L1 5566 5695 -429 1 1268 290 303 40 0 chr5 89622821 89622897 -62914362 + B1F SINE Alu 7 85 -64 1 1268 24 77 0 0 chr5 89623219 89623271 -62913988 + AT_rich Low_complexity Low_complexity 1 52 0 1 1268 712 250 0 0 chr5 89623394 89623538 -62913721 + B1_Mur2 SINE Alu 1 144 -5 1 1268 378 107 0 0 chr5 89623540 89623596 -62913663 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 1 1268 228 294 29 0 chr5 89623858 89623926 -62913333 - MTEa LTR MaLR -51 328 259 1 1268 248 325 8 71 chr5 89624872 89624998 -62912261 - MIRb SINE MIR -38 230 113 1 1268 251 167 101 43 chr5 89625180 89625249 -62912010 - ORR1A3-int LTR MaLR -1454 509 437 1 1268 556 218 2 47 chr5 89625936 89626071 -62911188 + ORR1C2 LTR MaLR 1 117 -267 1 1268 1496 172 70 11 chr5 89626071 89626382 -62910877 + ORR1C2 LTR MaLR 37 384 0 1 1268 186 183 92 77 chr5 89627229 89627294 -62909965 + L4 LINE RTE 1773 1838 -191 1 1268 614 259 0 7 chr5 89627816 89627952 -62909307 + B1F SINE Alu 3 137 -12 1 1268 378 0 0 0 chr5 89627955 89627997 -62909262 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1268 266 264 31 53 chr5 89629724 89629837 -62907422 - MIR SINE MIR 0 268 156 1 1268 788 310 40 47 chr5 89630542 89630816 -62906443 - B4 SINE B4 0 292 21 1 1268 723 274 83 47 chr5 89631590 89631843 -62905416 + B4 SINE B4 31 292 0 1 1268 238 274 70 87 chr5 89631831 89632003 -62905256 - RLTR21 LTR ERVK -370 1202 1034 1 1268 2828 12 3 0 chr5 89632801 89633122 -62904137 - RLTRETN_Mm LTR ERVK 0 322 1 1 1268 24147 29 11 12 chr5 89633122 89637712 -62899547 - MMETn-int LTR ERVK 0 4844 180 1 1268 2868 31 0 0 chr5 89637683 89638037 -62899222 - ETnERV-int LTR ERVK -2960 354 1 1 1268 2091 77 28 16 chr5 89638037 89638355 -62898904 - RLTRETN_Mm LTR ERVK 0 322 1 1 1268 200 315 0 40 chr5 89640185 89640261 -62896998 + L2c LINE L2 3306 3378 -9 1 1268 488 346 18 24 chr5 89640396 89640562 -62896697 - MER20 DNA MER1_type -24 195 31 1 1268 181 286 121 40 chr5 89640634 89640758 -62896501 - L2 LINE L2 -543 2876 2743 1 1268 336 295 115 50 chr5 89641716 89641916 -62895343 + L2a LINE L2 2679 2891 -528 1 1268 329 314 53 21 chr5 89641920 89642109 -62895150 + L2a LINE L2 3227 3421 -5 1 1268 690 13 0 0 chr5 89645522 89645601 -62891658 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 1268 958 127 0 7 chr5 89645759 89645902 -62891357 + B1_Mur4 SINE Alu 2 143 -7 1 1268 219 340 71 20 chr5 89649089 89649188 -62888071 - MIRb SINE MIR -122 146 43 1 1268 390 100 0 0 chr5 89649238 89649298 -62887961 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1268 421 251 6 72 chr5 89649843 89649969 -62887290 - B1F SINE Alu -60 89 5 1 1268 384 77 0 0 chr5 89650272 89650324 -62886935 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1268 210 37 0 0 chr5 89651515 89651542 -62885717 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1268 299 175 0 24 chr5 89652569 89652651 -62884608 + CT-rich Low_complexity Low_complexity 1 80 0 1 1268 224 185 19 0 chr5 89652922 89652976 -62884283 + C-rich Low_complexity Low_complexity 5 59 0 1 1269 316 0 22 22 chr5 89653402 89653447 -62883812 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 1 1269 180 0 0 0 chr5 89653458 89653478 -62883781 + (GTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1269 229 270 95 0 chr5 89655239 89655302 -62881957 + MIRb SINE MIR 176 244 -24 1 1269 2829 161 63 7 chr5 89655651 89656190 -62881069 - RMER15 LTR ERVL -2 573 5 1 1269 335 243 23 16 chr5 89657157 89657251 -62880008 + B3A SINE B2 119 216 0 1 1269 25 0 0 0 chr5 89657511 89657536 -62879723 + AT_rich Low_complexity Low_complexity 1 25 0 1 1269 210 171 0 0 chr5 89657943 89657984 -62879275 + GA-rich Low_complexity Low_complexity 2 42 0 1 1269 22 56 0 0 chr5 89658681 89658717 -62878542 + AT_rich Low_complexity Low_complexity 1 36 0 2 1269 232 313 15 0 chr5 89660082 89660149 -62877110 - ID4_ SINE ID -14 69 2 2 1269 256 268 45 30 chr5 89660423 89660558 -62876701 - L1MA4A LINE L1 -379 5924 5780 2 1269 597 152 21 25 chr5 89660588 89660870 -62876389 + (TG)n Simple_repeat Simple_repeat 1 281 0 2 1269 238 221 58 14 chr5 89660891 89660960 -62876299 - L1MA4A LINE L1 -521 5776 5705 2 1269 24 32 0 0 chr5 89661123 89661154 -62876105 + AT_rich Low_complexity Low_complexity 1 31 0 2 1269 675 57 0 0 chr5 89662852 89662940 -62874319 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 1269 399 41 0 0 chr5 89665495 89665544 -62871715 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1269 34 0 0 0 chr5 89666874 89666908 -62870351 + AT_rich Low_complexity Low_complexity 1 34 0 2 1269 230 275 30 8 chr5 89668763 89668895 -62868364 + (TA)n Simple_repeat Simple_repeat 2 136 0 2 1269 758 197 30 54 chr5 89670836 89671002 -62866257 + B3 SINE B2 55 216 0 2 1269 865 262 78 54 chr5 89671103 89671490 -62865769 - RLTR28B LTR ERVL -38 443 48 2 1269 290 24 48 0 chr5 89671670 89671712 -62865547 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1269 445 58 29 0 chr5 89672034 89672103 -62865156 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2 1269 2210 155 34 16 chr5 89672103 89672490 -62864769 - ORR1B1 LTR MaLR 0 394 1 2 1269 295 400 75 14 chr5 89672509 89672656 -62864603 - RSINE1 SINE B4 -4 161 6 2 1269 312 70 0 0 chr5 89672874 89672917 -62864342 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 2 1269 1158 183 117 28 chr5 89673448 89674003 -62863256 + RMER6C LTR ERVK 1 656 -34 2 1269 3310 41 4 122 chr5 89674020 89674514 -62862745 + RLTR10C LTR ERVK 1 436 0 2 1269 31 44 0 0 chr5 89676284 89676329 -62860930 + AT_rich Low_complexity Low_complexity 1 45 0 2 1269 28 79 0 0 chr5 89676641 89676704 -62860555 + AT_rich Low_complexity Low_complexity 1 63 0 2 1269 209 100 50 0 chr5 89677115 89677155 -62860104 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 2 1269 747 42 0 0 chr5 89678392 89678487 -62858772 + (CA)n Simple_repeat Simple_repeat 2 96 0 2 1269 234 267 28 28 chr5 89678498 89678606 -62858653 + L1M3b LINE L1 1479 1586 -4695 2 1269 257 290 166 5 chr5 89678599 89678815 -62858444 + L1M3b LINE L1 3888 4146 -2198 2 1269 301 268 98 0 chr5 89679091 89679214 -62858045 + L1M3b LINE L1 5598 5732 -784 2 1269 583 259 327 8 chr5 89679275 89679525 -62857734 + MTE2b LTR MaLR 50 379 0 2 1269 376 210 104 8 chr5 89679857 89679982 -62857277 - L1M5 LINE L1 -1329 4817 4681 2 1269 306 319 65 16 chr5 89680085 89680394 -62856865 + L1ME3B LINE L1 5625 5948 -292 2 1269 288 77 0 0 chr5 89680580 89680619 -62856640 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2 1269 403 240 127 39 chr5 89680941 89681201 -62856058 - HAL1 LINE L1 -2042 465 183 2 1269 268 282 167 20 chr5 89681316 89681609 -62855650 + L1MD3 LINE L1 6726 7061 -934 2 1269 252 299 51 13 chr5 89681921 89681999 -62855260 - ID4_ SINE ID 0 83 3 2 1269 391 335 64 26 chr5 89682088 89682244 -62855015 + MLT1A0 LTR MaLR 149 310 -55 2 1269 389 283 104 35 chr5 89682262 89682418 -62854841 + L1MD3 LINE L1 7626 7777 -218 2 1269 1268 187 0 0 chr5 89682418 89682643 -62854616 - URR1B DNA MER1_type 0 225 1 2 1269 389 283 104 35 chr5 89682643 89682804 -62854455 + L1MD3 LINE L1 7778 7965 -30 2 1269 547 277 58 0 chr5 89684098 89684235 -62853024 + RSINE1 SINE B4 2 146 -19 2 1269 477 0 0 0 chr5 89684672 89684725 -62852534 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1269 599 227 96 5 chr5 89684925 89685174 -62852085 - Lx9 LINE L1 -1675 5969 5681 2 1269 247 268 0 0 chr5 89686385 89686419 -62850840 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1269 348 24 0 0 chr5 89686419 89686460 -62850799 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1269 247 268 0 0 chr5 89686460 89686481 -62850778 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1269 455 318 110 38 chr5 89686583 89686792 -62850467 - MIR SINE MIR 0 262 39 2 1269 208 194 18 72 chr5 89687590 89687701 -62849558 + (TTATA)n Simple_repeat Simple_repeat 1 105 0 2 1269 180 288 0 0 chr5 89688946 89689019 -62848240 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1269 563 206 56 0 chr5 89689019 89689126 -62848133 - B1F SINE Alu -36 113 1 2 1269 452 283 24 40 chr5 89689126 89689144 -62848115 - ID_B1 SINE B4 -33 191 69 2 1269 352 236 14 27 chr5 89689799 89689888 -62847371 - B4 SINE B4 -75 90 2 2 1269 270 0 0 0 chr5 89690920 89690950 -62846309 + (CAA)n Simple_repeat Simple_repeat 1 30 0 2 1269 715 138 28 0 chr5 89691059 89691168 -62846091 + B1_Mur4 SINE Alu 33 144 -6 2 1269 437 161 11 0 chr5 89691180 89691267 -62845992 + (ATGGTG)n Simple_repeat Simple_repeat 5 92 0 2 1269 625 284 120 19 chr5 89691814 89692073 -62845186 + B4A SINE B4 2 286 -6 2 1269 2185 96 96 35 chr5 89692176 89692542 -62844717 + ORR1B1 LTR MaLR 2 389 -5 2 1269 628 321 0 0 chr5 89692861 89693023 -62844236 + RSINE1 SINE B4 4 165 0 2 1269 1405 192 134 9 chr5 89693600 89693921 -62843338 + MTC LTR MaLR 59 419 -2 2 1269 315 0 0 0 chr5 89694114 89694149 -62843110 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1269 305 303 0 0 chr5 89694584 89694600 -62842659 + B4 SINE B4 70 85 -207 2 1269 467 257 34 34 chr5 89694600 89694717 -62842542 + PB1D10 SINE Alu 1 117 0 2 1269 534 31 0 0 chr5 89694868 89694932 -62842327 + (TA)n Simple_repeat Simple_repeat 2 65 0 2 1269 1236 41 0 0 chr5 89694937 89695084 -62842175 - B1_Mm SINE Alu 0 147 1 2 1269 1618 306 71 22 chr5 89695341 89696070 -62841189 - Lx8 LINE L1 -195 7278 6514 2 1269 769 289 117 23 chr5 89696793 89697059 -62840200 + MTEb LTR MaLR 13 303 -76 2 1269 895 239 115 4 chr5 89697056 89697300 -62839959 + ORR1D2 LTR MaLR 90 360 -10 2 1269 252 258 29 29 chr5 89697572 89697640 -62839619 - PB1D10 SINE Alu -49 68 1 2 1269 1789 152 7 0 chr5 89698835 89699112 -62838147 + RLTR27 LTR ERVK 31 309 0 2 1269 985 273 118 91 chr5 89699918 89700110 -62837149 + MER63C DNA AcHobo 17 251 -185 2 1269 303 28 0 0 chr5 89700110 89700146 -62837113 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1269 985 315 100 38 chr5 89700146 89700779 -62836480 + MER63C DNA AcHobo 252 926 -4 2 1269 266 328 33 33 chr5 89701215 89701335 -62835924 + MIR SINE MIR 110 229 -33 2 1269 3148 140 74 0 chr5 89701793 89702322 -62834937 + RLTR20D LTR ERVK 1 568 0 2 1269 230 320 48 8 chr5 89702946 89703072 -62834187 - L1MC4 LINE L1 -445 7597 7467 2 1269 593 276 142 27 chr5 89703090 89703351 -62833908 + B4A SINE B4 2 292 0 2 1269 252 294 8 32 chr5 89703351 89703474 -62833785 + (CATA)n Simple_repeat Simple_repeat 3 122 0 2 1269 581 119 10 0 chr5 89703497 89703598 -62833661 + (CA)n Simple_repeat Simple_repeat 2 103 0 2 1269 243 0 0 0 chr5 89703600 89703627 -62833632 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1269 281 0 39 39 chr5 89703782 89703833 -62833426 + (TGG)n Simple_repeat Simple_repeat 3 53 0 2 1269 677 283 92 45 chr5 89703919 89704392 -62832867 - L1MC4 LINE L1 -979 7063 6548 2 1269 5153 180 77 14 chr5 89704862 89706031 -62831228 - Lx3C LINE L1 -2 6974 5732 2 1269 351 0 0 0 chr5 89706600 89706639 -62830620 + (CCA)n Simple_repeat Simple_repeat 3 41 0 2 1269 204 371 91 14 chr5 89706746 89706954 -62830305 + L2b LINE L2 2975 3198 -177 2 1269 189 107 0 0 chr5 89707118 89707146 -62830113 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2 1269 187 329 80 33 chr5 89707265 89707416 -62829843 - L2c LINE L2 0 3387 3230 2 1269 1106 326 135 41 chr5 89707474 89708150 -62829109 + MER21B LTR ERV1 20 758 -105 2 1269 232 231 80 27 chr5 89708644 89708759 -62828500 - RMER17D LTR ERVK -496 393 269 2 1269 1067 134 6 0 chr5 89708759 89708938 -62828321 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1269 232 231 80 27 chr5 89708938 89709009 -62828250 - RMER17D LTR ERVK -621 268 198 2 1269 281 341 92 28 chr5 89709044 89709186 -62828073 - L2c LINE L2 -901 2518 2368 2 1269 244 291 142 33 chr5 89709339 89709512 -62827747 + ORR1D1 LTR MaLR 1 197 -162 2 1269 664 292 149 30 chr5 89709661 89709996 -62827263 - Tigger9b DNA MER2_type -1 623 249 2 1269 585 114 0 0 chr5 89710742 89710847 -62826412 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 1269 2091 170 0 75 chr5 89710847 89711272 -62825987 + MTB_Mm LTR MaLR 4 396 -11 2 1269 534 301 50 40 chr5 89711288 89711489 -62825770 - Tigger9b DNA MER2_type -411 213 11 2 1269 292 209 11 11 chr5 89711725 89711812 -62825447 + CT-rich Low_complexity Low_complexity 2 88 0 2 1269 673 117 30 30 chr5 89712263 89712295 -62824964 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 2 1269 1890 136 53 9 chr5 89712295 89712636 -62824623 + RLTR15 LTR ERVK 1 356 -3 2 1269 673 175 34 30 chr5 89712636 89712878 -62824381 + (TCTA)n Simple_repeat Simple_repeat 1 243 0 2 1269 532 340 83 48 chr5 89713105 89713540 -62823719 - Lx8 LINE L1 -9 7464 7015 2 1269 505 310 46 46 chr5 89713540 89713692 -62823567 - ID_B1 SINE B4 -70 154 3 2 1269 201 74 0 0 chr5 89713874 89713901 -62823358 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2 1269 27 49 0 0 chr5 89714000 89714041 -62823218 + AT_rich Low_complexity Low_complexity 1 41 0 2 1269 186 43 0 0 chr5 89714042 89714065 -62823194 + (TATG)n Simple_repeat Simple_repeat 4 26 0 2 1269 617 245 101 7 chr5 89714065 89714213 -62823046 - B3A SINE B2 -34 164 3 2 1269 253 250 48 48 chr5 89714492 89714555 -62822704 - B3A SINE B2 -135 63 1 2 1269 3425 30 2 0 chr5 89714620 89715015 -62822244 + MTA_Mm LTR MaLR 1 396 0 2 1269 201 154 0 0 chr5 89715279 89715318 -62821941 + A-rich Low_complexity Low_complexity 2 40 0 2 1269 3125 119 19 2 chr5 89716045 89716516 -62820743 - Lx3A LINE L1 -7 6974 6496 2 1269 1106 168 113 0 chr5 89716703 89716906 -62820353 - URR1A DNA MER1_type 0 226 1 2 1269 201 288 25 0 chr5 89717941 89718021 -62819238 + (TA)n Simple_repeat Simple_repeat 2 83 0 2 1269 548 251 21 64 chr5 89718040 89718227 -62819032 - Tigger7 DNA MER2_type -80 2411 2234 2 1269 596 337 112 94 chr5 89718221 89718496 -62818763 - Tigger7 DNA MER2_type -2080 411 119 2 1269 872 239 19 14 chr5 89718496 89718704 -62818555 + B3 SINE B2 3 211 -5 3 1269 596 337 112 94 chr5 89718704 89718831 -62818428 - Tigger7 DNA MER2_type -2373 118 2 2 1269 677 258 115 63 chr5 89718886 89719234 -62818025 - RLTR9A LTR ERVK 0 368 3 3 1269 26128 64 0 0 chr5 89719743 89723689 -62813570 + L1Md_F2 LINE L1 1641 5586 -297 3 1269 8157 47 1 4 chr5 89723689 89724686 -62812573 + L1Md_F2 LINE L1 5587 6580 -2 3 1269 510 46 0 0 chr5 89724808 89724873 -62812386 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1269 811 291 67 4 chr5 89724877 89725146 -62812113 - B4A SINE B4 -6 286 1 3 1269 262 385 46 0 chr5 89725194 89725303 -62811956 + MER63B DNA AcHobo 312 425 -11 3 1269 239 284 30 59 chr5 89725317 89725418 -62811841 + L2a LINE L2 3329 3426 0 3 1269 2785 311 90 22 chr5 89725570 89726441 -62810818 - Lx8 LINE L1 -59 7414 6477 3 1269 2375 176 78 20 chr5 89726441 89726940 -62810319 - RLTR11A LTR ERVK 0 528 1 3 1269 2785 311 90 22 chr5 89726940 89727231 -62810028 - Lx8 LINE L1 -997 6476 6185 3 1269 432 0 0 0 chr5 89727231 89727279 -62809980 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 3 1269 2785 311 90 22 chr5 89727279 89727325 -62809934 - Lx8 LINE L1 -1289 6184 6124 3 1269 372 327 24 14 chr5 89727447 89727655 -62809604 - Lx9 LINE L1 -1671 5973 5764 3 1269 526 275 37 90 chr5 89727662 89727930 -62809329 + L1_Mur3 LINE L1 4580 4833 -1047 3 1269 627 280 8 0 chr5 89727968 89728093 -62809166 - B1F SINE Alu -11 138 13 3 1269 248 336 134 48 chr5 89730015 89730284 -62806975 + LTR16E2 LTR ERVL 246 537 -31 3 1269 1254 236 139 59 chr5 89730501 89730561 -62806698 + MTD LTR MaLR 3 60 -359 3 1269 229 26 26 26 chr5 89730561 89730600 -62806659 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1269 1062 101 0 0 chr5 89730600 89730738 -62806521 - B1_Mus2 SINE Alu -9 138 1 3 1269 1254 238 136 58 chr5 89730738 89731057 -62806202 + MTD LTR MaLR 61 404 -15 3 1269 202 358 25 102 chr5 89731500 89731696 -62805563 - MIR3 SINE MIR -13 195 15 3 1269 519 212 35 0 chr5 89732226 89732339 -62804920 - PB1D9 SINE Alu -3 117 1 3 1269 223 262 0 58 chr5 89732362 89732431 -62804828 - PB1D10 SINE Alu -51 66 2 3 1269 2247 150 92 9 chr5 89734152 89734576 -62802683 - RMER6B LTR ERVK -2 459 1 3 1269 639 244 96 6 chr5 89734622 89734799 -62802460 + B3 SINE B2 24 216 0 3 1269 291 320 71 32 chr5 89734824 89734950 -62802309 + B1F1 SINE Alu 10 140 -9 3 1269 273 349 0 0 chr5 89734973 89735056 -62802203 + ID4_ SINE ID 1 83 0 3 1269 374 131 24 0 chr5 89735130 89735214 -62802045 + A-rich Low_complexity Low_complexity 2 87 0 3 1269 504 72 0 0 chr5 89735514 89735583 -62801676 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1269 298 363 153 8 chr5 89735584 89735829 -62801430 - B4A SINE B4 -12 280 1 3 1269 201 74 0 0 chr5 89736207 89736234 -62801025 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1269 6862 180 30 15 chr5 89736239 89737898 -62799361 - Lx5 LINE L1 -9 7041 5345 3 1269 2894 71 46 5 chr5 89737898 89738293 -62798966 + RLTR10A LTR ERVK 1 411 0 3 1269 5325 144 19 30 chr5 89738293 89738783 -62798476 - Lx5 LINE L1 -533 5344 4858 3 1269 36329 13 0 8 chr5 89738780 89744152 -62793107 + L1Md_A LINE L1 264 5585 -298 3 1269 8724 15 5 0 chr5 89744153 89745144 -62792115 + L1Md_A LINE L1 5587 6582 0 3 1269 12541 159 34 53 chr5 89745152 89747961 -62789298 - Lx5 LINE L1 -1007 4870 2117 3 1269 559 196 7 36 chr5 89747952 89748090 -62789169 - L1_Mur2 LINE L1 -3294 2583 2450 3 1269 821 84 8 0 chr5 89748092 89748211 -62789048 + (TTCC)n Simple_repeat Simple_repeat 1 120 0 3 1269 1571 170 53 0 chr5 89748221 89748544 -62788715 - L1_Mur2 LINE L1 -3421 2456 2117 3 1269 6074 178 31 18 chr5 89748535 89748668 -62788591 - L1_Mur3 LINE L1 -3294 2583 2453 3 1269 873 86 21 7 chr5 89748668 89748809 -62788450 + (TTCC)n Simple_repeat Simple_repeat 2 144 0 3 1269 6074 186 27 15 chr5 89748809 89750323 -62786936 - L1_Mur3 LINE L1 -3425 2452 918 3 1269 1043 205 22 18 chr5 89751666 89751890 -62785369 + URR1B DNA MER1_type 1 225 0 3 1269 28591 82 6 10 chr5 89751988 89756940 -62780319 + L1Md_F LINE L1 380 5312 -571 3 1269 33429 55 2 5 chr5 89756930 89762787 -62774472 + L1Md_T LINE L1 1 5588 -298 3 1269 8310 40 0 0 chr5 89762788 89763784 -62773475 + L1Md_T LINE L1 5590 6585 0 3 1269 2476 17 0 0 chr5 89763784 89764079 -62773180 + L1Md_T LINE L1 5291 5585 -298 3 1269 8294 41 0 0 chr5 89764080 89765076 -62772183 + L1Md_T LINE L1 5587 6582 0 3 1269 2401 41 0 0 chr5 89765076 89765371 -62771888 + L1Md_F2 LINE L1 5291 5585 -298 3 1269 7400 84 1 2 chr5 89765372 89766369 -62770890 + L1Md_F2 LINE L1 5587 6582 0 3 1269 971 156 0 6 chr5 89766369 89766530 -62770729 + B2_Mm2 SINE B2 28 187 -8 3 1269 412 319 45 24 chr5 89766542 89766867 -62770392 - L1_Mur3 LINE L1 -3346 2501 2151 3 1269 450 296 41 27 chr5 89767982 89768128 -62769131 - Tigger5 DNA MER2_type -2205 201 54 3 1269 567 0 0 0 chr5 89768767 89768830 -62768429 + (TC)n Simple_repeat Simple_repeat 2 64 0 3 1269 414 0 0 0 chr5 89768830 89768875 -62768384 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1269 184 283 0 21 chr5 89770015 89770062 -62767197 + L2c LINE L2 3052 3097 -278 3 1269 204 292 30 119 chr5 89770173 89770274 -62766985 + L2c LINE L2 3275 3366 -21 3 1269 641 178 58 15 chr5 89771100 89771237 -62766022 + MER57D LTR ERV1 3 145 -266 3 1269 342 0 0 0 chr5 89771458 89771496 -62765763 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1269 441 0 0 0 chr5 89771715 89771764 -62765495 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1269 840 206 44 16 chr5 89772397 89772580 -62764679 - RMER12 LTR ERVK 0 1322 1135 3 1269 1186 144 44 135 chr5 89772607 89772904 -62764355 - RMER12 LTR ERVK -420 902 633 3 1269 2906 86 13 0 chr5 89773074 89773469 -62763790 - MTB LTR MaLR 0 400 1 3 1269 958 157 99 81 chr5 89774177 89774399 -62762860 + URR1A DNA MER1_type 1 226 0 3 1269 991 268 96 23 chr5 89774557 89774569 -62762690 - B4 SINE B4 -13 279 267 3 1269 205 29 59 0 chr5 89774569 89774603 -62762656 + (TGG)n Simple_repeat Simple_repeat 2 37 0 3 1269 991 268 96 23 chr5 89774603 89774850 -62762409 - B4 SINE B4 -26 266 2 3 1269 840 229 182 32 chr5 89775228 89775556 -62761703 + MTD LTR MaLR 1 405 -14 3 1269 763 303 121 45 chr5 89777630 89778491 -62758768 - L1M4 LINE L1 -1659 4487 3543 3 1269 1412 224 166 100 chr5 89778493 89778787 -62758472 - Lx8 LINE L1 -221 7252 6961 3 1269 303 136 0 0 chr5 89778787 89778846 -62758413 + (CTG)n Simple_repeat Simple_repeat 1 59 0 3 1269 1412 224 166 100 chr5 89778846 89779063 -62758196 - Lx8 LINE L1 -513 6960 6707 3 1269 298 143 0 35 chr5 89779066 89779118 -62758141 + ORR1B2 LTR MaLR 2 51 -316 3 1269 1645 229 81 64 chr5 89779118 89779588 -62757671 - RMER19C LTR ERVK 0 611 134 3 1269 1948 156 15 33 chr5 89779621 89779952 -62757307 + ORR1B2 LTR MaLR 43 367 0 3 1269 1074 294 23 40 chr5 89779952 89780306 -62756953 - Lx8 LINE L1 -764 6709 6362 3 1269 634 167 52 9 chr5 89780306 89780421 -62756838 + ORR1D1 LTR MaLR 3 122 -252 3 1269 1452 266 15 8 chr5 89780421 89780823 -62756436 - L1_Mur3 LINE L1 -1626 4254 3850 3 1269 200 118 0 29 chr5 89781111 89781146 -62756113 + (TTCTC)n Simple_repeat Simple_repeat 2 35 0 3 1269 258 81 0 0 chr5 89781235 89781272 -62755987 + (TCC)n Simple_repeat Simple_repeat 3 39 0 3 1269 321 303 94 23 chr5 89781655 89781917 -62755342 - L1M4 LINE L1 -3653 2493 2213 3 158 3170 84 14 2 chr5 89784048 89784464 -62752795 + BGLII LTR ERVK 1 421 0 3 1270 256 280 0 0 chr5 89784823 89784873 -62752386 - RSINE1 SINE B4 -8 157 108 3 1270 384 266 111 60 chr5 89784870 89785086 -62752173 - B4 SINE B4 -60 232 6 3 1270 396 262 16 16 chr5 89785971 89786095 -62751164 - RMER15 LTR ERVL -14 561 438 3 1270 299 244 25 14 chr5 89787164 89787263 -62749996 - MTEb LTR MaLR -1 378 279 3 1270 2385 99 3 58 chr5 89787576 89787920 -62749339 + ORR1A2 LTR MaLR 1 325 -2 3 1270 392 348 94 61 chr5 89788042 89788520 -62748739 + L2a LINE L2 2930 3423 -3 3 1270 974 218 35 5 chr5 89788831 89789034 -62748225 - B3 SINE B2 -7 209 1 3 1270 779 0 0 11 chr5 89789874 89789966 -62747293 + (TTCTC)n Simple_repeat Simple_repeat 5 95 0 3 1270 423 333 32 0 chr5 89790051 89790207 -62747052 + MER3 DNA MER1_type 1 161 -48 3 1270 198 91 0 0 chr5 89791103 89791136 -62746123 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 3 1270 1376 239 86 3 chr5 89791856 89792192 -62745067 + ORR1D2 LTR MaLR 7 370 0 3 1270 192 179 0 0 chr5 89793129 89793168 -62744091 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1270 294 333 28 19 chr5 89793751 89793858 -62743401 + MIRb SINE MIR 146 253 -15 3 1270 369 0 0 0 chr5 89793869 89793910 -62743349 + (TTA)n Simple_repeat Simple_repeat 2 42 0 3 1270 1435 152 9 30 chr5 89794067 89794298 -62742961 + URR1A DNA MER1_type 1 226 0 3 1270 189 0 0 0 chr5 89794720 89794741 -62742518 + (TC)n Simple_repeat Simple_repeat 1 21 0 3 1270 314 319 100 69 chr5 89795079 89795369 -62741890 - L2b LINE L2 -11 3364 3066 3 1270 1145 280 91 34 chr5 89795429 89795682 -62741577 - MLT1C LTR MaLR 0 467 209 3 1270 342 0 0 0 chr5 89795682 89795720 -62741539 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1270 1145 280 91 34 chr5 89795720 89795906 -62741353 - MLT1C LTR MaLR -259 208 4 3 1270 221 338 23 79 chr5 89795929 89796144 -62741115 - L2b LINE L2 -475 2944 2742 3 1270 402 275 55 9 chr5 89796462 89796572 -62740687 + B1F SINE Alu 1 115 -34 3 1270 1365 25 0 0 chr5 89796573 89796734 -62740525 + (GGGAGA)n Simple_repeat Simple_repeat 3 163 0 3 1270 1111 150 21 11 chr5 89796874 89797063 -62740196 + B2_Mm2 SINE B2 2 192 -3 3 1270 358 267 148 31 chr5 89799231 89799532 -62737727 + MER47B DNA MER2_type 1 418 0 3 1270 892 136 50 7 chr5 89799628 89799769 -62737490 - B1_Mur3 SINE Alu 0 149 3 3 1270 967 325 17 3 chr5 89799797 89800152 -62737107 + Lx7 LINE L1 6961 7320 -376 3 1270 1104 149 77 0 chr5 89800866 89801047 -62736212 - MTD LTR MaLR -29 390 196 3 1270 5993 53 3 3 chr5 89801047 89801748 -62735511 - L1Md_F2 LINE L1 0 6582 5882 3 1270 3880 49 2 1 chr5 89802845 89803426 -62733833 - L1Md_F2 LINE L1 -597 5985 5405 3 1270 1576 11 6 0 chr5 89803415 89803591 -62733668 + L1Md_F2 LINE L1 6091 6267 -315 3 1270 434 334 126 13 chr5 89804244 89804487 -62732772 - L1MD2 LINE L1 -1151 5393 5125 3 1270 435 38 0 0 chr5 89804487 89804540 -62732719 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1270 434 334 126 13 chr5 89804540 89804772 -62732487 - L1MD2 LINE L1 -1420 5124 4864 3 1270 7654 42 11 5 chr5 89804868 89805788 -62731471 - L1_Mus1 LINE L1 0 6567 5643 3 1270 3972 90 9 6 chr5 89805776 89806322 -62730937 + L1_Mus1 LINE L1 5110 5657 -226 3 1270 911 308 77 68 chr5 89806330 89806996 -62730263 - L1MD2 LINE L1 -1794 4750 4079 3 1270 430 237 49 33 chr5 89807014 89807136 -62730123 - RMER15 LTR ERVL -104 471 348 3 1270 543 309 11 12 chr5 89807174 89807423 -62729836 - L1MD2 LINE L1 -2468 4076 3825 3 1270 1271 146 68 0 chr5 89807459 89807664 -62729595 - URR1B DNA MER1_type -2 223 5 3 1270 300 310 51 17 chr5 89807812 89807930 -62729329 - L1MD2 LINE L1 -5618 929 808 3 1270 1045 231 181 22 chr5 89808277 89808592 -62728667 - MTE2b LTR MaLR -12 367 3 3 1270 385 266 63 28 chr5 89808694 89808837 -62728422 - L1MD2 LINE L1 -6371 176 29 3 1270 574 231 150 23 chr5 89810982 89811155 -62726104 + B3A SINE B2 4 198 0 3 1270 24 0 0 0 chr5 89811310 89811334 -62725925 + AT_rich Low_complexity Low_complexity 1 24 0 4 1270 477 144 0 0 chr5 89812921 89813011 -62724248 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 1270 199 259 54 76 chr5 89813048 89813140 -62724119 - MIR SINE MIR -51 211 122 4 1270 189 0 0 0 chr5 89813720 89813741 -62723518 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 1270 288 190 48 39 chr5 89814156 89814260 -62722999 + (CATATA)n Simple_repeat Simple_repeat 4 108 0 4 1270 279 0 0 0 chr5 89814464 89814495 -62722764 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1270 706 203 16 53 chr5 89814495 89814682 -62722577 - Lx4B LINE L1 -19 7039 6860 4 1270 855 219 26 46 chr5 89814688 89814968 -62722291 - RLTR20B3 LTR ERVK 0 534 5 4 1270 3964 179 15 13 chr5 89814971 89815723 -62721536 - Lx2B LINE L1 -237 6763 6011 4 1270 465 299 58 40 chr5 89817094 89817317 -62719942 - L1MC3 LINE L1 -1249 6536 6310 4 1270 775 223 78 0 chr5 89817489 89817655 -62719604 + RLTR40 LTR ERVK 632 810 -7 4 1270 343 232 0 24 chr5 89817662 89817746 -62719513 + MTE-int LTR MaLR 328 409 -1171 4 1270 891 221 42 19 chr5 89817746 89817958 -62719301 - ORR1D1 LTR MaLR 0 374 158 4 1270 220 211 0 27 chr5 89817958 89818031 -62719228 + GA-rich Low_complexity Low_complexity 3 73 0 4 1270 343 149 0 26 chr5 89820387 89820463 -62716796 + CT-rich Low_complexity Low_complexity 4 77 0 4 1270 307 307 113 14 chr5 89820471 89820613 -62716646 - HAL1-3A_ME LINE L1 -420 2438 2283 4 1270 373 346 84 32 chr5 89821172 89821518 -62715741 - L1M5 LINE L1 -1302 4844 4481 4 1270 533 331 36 0 chr5 89821932 89822098 -62715161 + Lx8 LINE L1 6204 6375 -1098 4 1270 241 359 56 45 chr5 89822231 89822409 -62714850 - RMER4B LTR ERVK -396 189 10 4 1270 2404 298 116 27 chr5 89822474 89822800 -62714459 + Lx8 LINE L1 6368 6734 -739 4 1270 6423 93 9 32 chr5 89822800 89823728 -62713531 - RMER17A2 LTR ERVK 0 906 1 4 1270 2404 298 116 27 chr5 89823728 89824412 -62712847 + Lx8 LINE L1 6735 7468 -5 4 1270 22 0 0 0 chr5 89824487 89824509 -62712750 + AT_rich Low_complexity Low_complexity 1 22 0 4 1270 39298 38 1 3 chr5 89824509 89830677 -62706582 - L1Md_T LINE L1 0 6585 338 4 1270 301 132 355 18 chr5 89830845 89830952 -62706307 - B2_Mm2 SINE B2 -6 189 47 4 1270 1323 97 17 0 chr5 89831018 89831194 -62706065 - B2_Mm1t SINE B2 -14 179 1 4 1270 544 254 113 0 chr5 89831247 89831389 -62705870 + B3A SINE B2 2 159 -39 4 1270 235 247 49 31 chr5 89831614 89831777 -62705482 + RMER17A LTR ERVK 308 473 -278 4 1270 312 355 55 24 chr5 89832122 89832249 -62705010 - RSINE1 SINE B4 -31 134 4 4 1270 3670 39 0 0 chr5 89833184 89833592 -62703667 - L1Md_T LINE L1 0 6582 6175 4 1270 195 42 0 0 chr5 89833736 89833760 -62703499 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 4 1270 246 302 22 44 chr5 89834895 89834985 -62702274 - MamRep1894 DNA hAT -32 91 4 4 1270 223 267 0 29 chr5 89835841 89835945 -62701314 + G-rich Low_complexity Low_complexity 2 102 0 4 1270 2533 171 67 12 chr5 89836423 89836904 -62700355 - RLTR11A LTR ERVK 0 528 22 4 1270 1850 171 56 25 chr5 89836872 89837227 -62700032 + RMER20A LTR ERVK 151 516 0 4 1270 2986 112 76 51 chr5 89837227 89837305 -62699954 - RMER12 LTR ERVK -791 531 460 4 1270 1313 53 22 152 chr5 89837305 89837529 -62699730 - B2_Mm2 SINE B2 0 195 1 4 1270 2986 112 76 51 chr5 89837529 89837968 -62699291 - RMER12 LTR ERVK -863 459 1 4 1270 957 150 93 50 chr5 89838200 89838382 -62698877 + B2_Mm2 SINE B2 2 191 -4 4 1270 4926 104 180 15 chr5 89838407 89839229 -62698030 - L1_Mus4 LINE L1 -6 6630 5673 4 1270 4821 96 35 1 chr5 89839229 89839876 -62697383 + L1_Mus3 LINE L1 5970 6638 0 4 1270 1136 78 43 0 chr5 89840168 89840309 -62696950 + B1_Mus1 SINE Alu 2 148 0 4 1270 206 218 18 18 chr5 89840332 89840388 -62696871 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1270 403 155 12 12 chr5 89840983 89841068 -62696191 + GA-rich Low_complexity Low_complexity 3 87 0 4 1270 257 197 0 76 chr5 89841372 89841438 -62695821 + LTR23-int LTR ERV1 115 175 -4948 4 1270 901 73 0 16 chr5 89841672 89841797 -62695462 + B1_Mm SINE Alu 25 147 0 4 1270 186 43 0 0 chr5 89841806 89841829 -62695430 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1270 573 289 128 15 chr5 89842204 89842440 -62694819 + MLT2C1 LTR ERVL 93 515 -44 4 1270 6295 122 12 11 chr5 89843161 89844746 -62692513 - Lx2B LINE L1 -521 6479 4883 4 1270 3768 114 8 4 chr5 89844746 89845263 -62691996 + Lx2B LINE L1 6479 6997 -3 4 1270 26 0 0 0 chr5 89846567 89846593 -62690666 + AT_rich Low_complexity Low_complexity 1 26 0 4 1270 2432 195 12 2 chr5 89847022 89847439 -62689820 + MTC LTR MaLR 1 421 0 4 1270 290 157 23 35 chr5 89847860 89847946 -62689313 + T-rich Low_complexity Low_complexity 2 86 0 4 1270 225 0 0 0 chr5 89848077 89848102 -62689157 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1270 605 277 93 13 chr5 89849178 89849328 -62687931 - RSINE1 SINE B4 -1 164 3 4 1270 297 0 0 0 chr5 89849443 89849476 -62687783 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1270 396 0 0 0 chr5 89849485 89849529 -62687730 + (CCA)n Simple_repeat Simple_repeat 3 46 0 4 1270 639 221 38 8 chr5 89850241 89850373 -62686886 + B1_Mus2 SINE Alu 2 137 -10 4 1270 201 74 0 0 chr5 89850373 89850400 -62686859 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1270 880 79 14 4 chr5 89850533 89850667 -62686592 - B2_Mm2 SINE B2 -80 136 1 4 1270 724 286 17 0 chr5 89852352 89852436 -62684823 + B4A SINE B4 1 87 -205 4 1270 219 277 37 112 chr5 89852436 89852570 -62684689 + B1_Mur3 SINE Alu 1 124 -25 4 1270 189 0 0 0 chr5 89853166 89853187 -62684072 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4 1270 576 95 0 0 chr5 89853829 89853913 -62683346 + (GA)n Simple_repeat Simple_repeat 1 84 0 4 1270 357 24 0 0 chr5 89854342 89854384 -62682875 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1270 21 57 0 0 chr5 89854505 89854540 -62682719 + AT_rich Low_complexity Low_complexity 1 35 0 4 1270 297 0 0 0 chr5 89856456 89856489 -62680770 + (TTG)n Simple_repeat Simple_repeat 1 33 0 4 1270 38895 30 1 1 chr5 89856609 89863501 -62673758 - L1Md_T LINE L1 0 6585 1 4 1270 817 249 60 28 chr5 89863508 89863793 -62673466 - RLTR15 LTR ERVK -65 294 1 4 1270 564 319 78 52 chr5 89864231 89864502 -62672757 - Cheshire DNA MER1_type -2136 284 7 4 1270 669 163 0 0 chr5 89864777 89864872 -62672387 + polypyrimidine Low_complexity Low_complexity 30 124 0 4 1270 1099 59 13 0 chr5 89864872 89865024 -62672235 + (TCCC)n Simple_repeat Simple_repeat 4 157 0 4 1270 669 163 0 0 chr5 89865024 89865051 -62672208 + polypyrimidine Low_complexity Low_complexity 3 29 0 4 1270 2404 54 0 39 chr5 89865053 89865361 -62671898 - L1_Mus1 LINE L1 0 6567 6272 4 1270 249 181 10 87 chr5 89865466 89865553 -62671706 - ID_B1 SINE B4 -70 154 82 4 1270 315 0 0 0 chr5 89865565 89865600 -62671659 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 1270 474 228 135 16 chr5 89865602 89865794 -62671465 - Lx9 LINE L1 -2 7642 7428 4 1270 876 133 0 0 chr5 89866476 89866619 -62670640 + (TTTC)n Simple_repeat Simple_repeat 4 146 0 4 1270 834 194 0 14 chr5 89866630 89866771 -62670488 - B1_Mus1 SINE Alu -9 139 1 4 1270 1200 56 7 14 chr5 89866975 89867121 -62670138 + B1_Mus1 SINE Alu 2 146 -2 4 1270 26 64 0 0 chr5 89868120 89868167 -62669092 + AT_rich Low_complexity Low_complexity 1 47 0 4 1270 955 298 148 4 chr5 89869024 89869516 -62667743 - L1M3 LINE L1 -847 5293 4731 4 1270 483 90 0 0 chr5 89870799 89870877 -62666382 + (TG)n Simple_repeat Simple_repeat 2 79 0 4 1270 424 250 0 0 chr5 89870924 89871004 -62666255 - B4A SINE B4 -211 81 2 4 1270 572 269 64 0 chr5 89871360 89871501 -62665758 + B3A SINE B2 2 151 -47 4 1270 319 271 16 78 chr5 89871704 89871832 -62665427 - PB1D9 SINE Alu 0 120 1 4 1270 183 222 0 0 chr5 89872254 89872299 -62664960 + CT-rich Low_complexity Low_complexity 3 47 0 4 1270 227 146 0 0 chr5 89872337 89872378 -62664881 - PB1D9 SINE Alu -50 70 30 4 1270 666 0 0 0 chr5 89873007 89873081 -62664178 + (CATCT)n Simple_repeat Simple_repeat 3 76 0 4 1270 227 186 3 42 chr5 89873369 89873423 -62663836 - B4 SINE B4 -150 142 90 4 1270 382 96 0 0 chr5 89873423 89873475 -62663784 + L1_Mm LINE L1 2761 2812 -3071 4 1270 576 152 306 14 chr5 89873476 89873623 -62663636 - B2_Mm2 SINE B2 0 195 6 4 1270 1324 274 7 0 chr5 89873635 89873938 -62663321 - Lx5 LINE L1 -279 6771 6467 4 1270 543 112 0 0 chr5 89874218 89874316 -62662943 + (CA)n Simple_repeat Simple_repeat 2 99 0 4 1270 27 49 0 0 chr5 89874542 89874583 -62662676 + AT_rich Low_complexity Low_complexity 1 41 0 4 1270 2197 132 59 39 chr5 89874651 89875007 -62662252 + ORR1B2 LTR MaLR 1 363 -4 4 1270 602 42 41 20 chr5 89875057 89875155 -62662104 + L1Md_F3 LINE L1 6485 6584 0 4 1270 222 139 58 11 chr5 89875646 89875733 -62661526 + (TA)n Simple_repeat Simple_repeat 2 92 0 4 1270 292 284 37 0 chr5 89875988 89876069 -62661190 + CT-rich Low_complexity Low_complexity 1 84 0 4 1270 488 209 78 0 chr5 89876739 89876854 -62660405 + B1_Mur2 SINE Alu 5 128 -21 4 1270 358 79 32 0 chr5 89876855 89876918 -62660341 + (CAA)n Simple_repeat Simple_repeat 2 66 0 4 1270 338 0 24 0 chr5 89877679 89877721 -62659538 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1270 36 23 0 0 chr5 89877786 89877829 -62659430 + AT_rich Low_complexity Low_complexity 1 43 0 4 1270 255 289 0 0 chr5 89877937 89877989 -62659270 - PB1D10 SINE Alu -16 101 50 4 1270 1257 68 0 0 chr5 89877997 89878143 -62659116 - B1_Mm SINE Alu -1 146 1 5 1270 429 247 175 24 chr5 89879640 89879667 -62657592 - B3A SINE B2 -6 192 166 5 1270 339 25 0 0 chr5 89879667 89879707 -62657552 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1270 429 247 175 24 chr5 89879707 89879845 -62657414 - B3A SINE B2 -33 165 2 5 1270 186 133 0 0 chr5 89880852 89880882 -62656377 + (CATG)n Simple_repeat Simple_repeat 1 30 0 5 1270 820 262 11 16 chr5 89880894 89881076 -62656183 - B3A SINE B2 -16 182 2 5 1270 264 91 45 0 chr5 89881779 89881823 -62655436 - U2 snRNA snRNA -142 46 1 5 1270 521 233 89 99 chr5 89881825 89882021 -62655238 + L1MA8 LINE L1 4976 5162 -981 5 1270 806 234 103 5 chr5 89882021 89882206 -62655053 - B3 SINE B2 -12 204 2 5 1270 1354 236 88 95 chr5 89882206 89882422 -62654837 + L1MA8 LINE L1 5163 5372 -919 5 1270 321 93 0 0 chr5 89882422 89882476 -62654783 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 5 1270 1354 271 87 55 chr5 89882476 89883127 -62654132 + L1MA8 LINE L1 5373 6052 -239 5 1270 1247 132 142 0 chr5 89883226 89883423 -62653836 - URR1A DNA MER1_type 0 226 2 5 1270 208 184 20 20 chr5 89884952 89885002 -62652257 + CT-rich Low_complexity Low_complexity 6 55 0 5 1270 966 156 202 22 chr5 89885393 89885576 -62651683 + B3 SINE B2 1 216 0 5 1270 473 285 20 59 chr5 89886324 89886477 -62650782 - ID_B1 SINE B4 0 224 78 5 1270 184 133 43 22 chr5 89887156 89887202 -62650057 + CT-rich Low_complexity Low_complexity 2 48 0 5 1270 504 45 0 0 chr5 89887836 89887903 -62649356 + (TATG)n Simple_repeat Simple_repeat 2 68 0 5 1270 306 0 0 0 chr5 89889223 89889257 -62648002 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1270 22 0 0 0 chr5 89889620 89889642 -62647617 + AT_rich Low_complexity Low_complexity 1 22 0 5 1270 376 238 77 68 chr5 89889777 89889984 -62647275 - L1MA7 LINE L1 -250 6041 5833 5 1270 549 44 0 0 chr5 89889990 89890058 -62647201 + (TCC)n Simple_repeat Simple_repeat 2 69 0 5 1270 677 61 0 10 chr5 89890058 89890158 -62647101 + (TC)n Simple_repeat Simple_repeat 1 99 0 5 1270 241 269 26 0 chr5 89890158 89890236 -62647023 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 5 1270 747 255 32 52 chr5 89890244 89890573 -62646686 - L1MA7 LINE L1 -514 5777 5455 5 1270 612 0 0 0 chr5 89890603 89890671 -62646588 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 5 1270 687 65 0 0 chr5 89890699 89890792 -62646467 + (GA)n Simple_repeat Simple_repeat 1 93 0 5 1270 188 67 33 0 chr5 89891304 89891334 -62645925 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 5 1270 295 254 135 6 chr5 89891450 89891628 -62645631 - L1P5 LINE L1 -563 5593 5393 5 1270 228 210 48 16 chr5 89891781 89891844 -62645415 - RLTR18 LTR ERVK -48 568 504 5 1270 5719 228 81 27 chr5 89893454 89895361 -62641898 - Lx9 LINE L1 -7 7637 5504 5 1270 660 111 0 29 chr5 89895510 89895594 -62641665 + RMER17C LTR ERVK 1 84 -326 5 1270 603 51 0 0 chr5 89895594 89895673 -62641586 + (TC)n Simple_repeat Simple_repeat 1 79 0 5 1270 660 111 0 29 chr5 89895673 89895690 -62641569 + RMER17C LTR ERVK 85 99 -311 5 1270 1219 82 11 11 chr5 89895676 89895861 -62641398 + RMER17C LTR ERVK 226 410 0 5 1270 183 253 117 26 chr5 89896099 89896176 -62641083 + L2a LINE L2 3343 3426 0 5 1270 984 283 123 32 chr5 89896514 89896978 -62640281 - MER67C LTR ERV1 -125 586 81 5 1270 725 270 19 22 chr5 89897297 89897505 -62639754 - B3A SINE B2 -4 189 3 5 1270 273 375 66 32 chr5 89897670 89898047 -62639212 + L2a LINE L2 2967 3413 -13 5 1270 885 163 37 26 chr5 89898468 89898488 -62638771 + L1Md_A LINE L1 5896 5911 -671 5 1270 3813 51 0 11 chr5 89898488 89898966 -62638293 - L1_Mus1 LINE L1 0 6567 6095 5 1270 1266 53 0 0 chr5 89898966 89899135 -62638124 + L1_Mus1 LINE L1 5913 6081 -486 5 1270 7449 60 8 1 chr5 89900221 89901295 -62635964 - L1_Mus1 LINE L1 0 6567 5488 5 1270 490 320 7 32 chr5 89901483 89901638 -62635621 + RSINE1 SINE B4 8 158 -7 5 1270 835 238 5 22 chr5 89901744 89901929 -62635330 + B3A SINE B2 1 182 -16 5 1270 619 321 94 49 chr5 89902322 89902610 -62634649 - Tigger7 DNA MER2_type -2189 302 2 5 1270 22 35 0 0 chr5 89903687 89903716 -62633543 + AT_rich Low_complexity Low_complexity 1 29 0 5 1270 459 0 0 0 chr5 89904383 89904434 -62632825 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1270 251 266 35 15 chr5 89905015 89905132 -62632127 + MIRb SINE MIR 111 236 -26 5 1270 587 329 85 34 chr5 89905428 89905780 -62631479 + MLT1A LTR MaLR 4 373 -1 5 1270 25 31 0 0 chr5 89905918 89905950 -62631309 + AT_rich Low_complexity Low_complexity 1 32 0 5 1270 22 35 0 0 chr5 89906112 89906141 -62631118 + AT_rich Low_complexity Low_complexity 1 29 0 5 1270 242 323 95 12 chr5 89906402 89906571 -62630688 + L2a LINE L2 1510 1692 -1727 5 1270 22 0 0 0 chr5 89907086 89907108 -62630151 + AT_rich Low_complexity Low_complexity 1 22 0 5 1270 28 0 0 0 chr5 89907266 89907294 -62629965 + AT_rich Low_complexity Low_complexity 1 28 0 5 1270 656 181 12 12 chr5 89907807 89907975 -62629284 + (TA)n Simple_repeat Simple_repeat 2 169 0 5 1270 197 167 0 62 chr5 89908760 89908824 -62628435 + C-rich Low_complexity Low_complexity 1 60 0 5 1270 349 307 154 76 chr5 89908830 89909292 -62627967 + L2a LINE L2 2923 3420 -6 5 1270 243 0 0 0 chr5 89910555 89910582 -62626677 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1270 1655 283 46 57 chr5 89910830 89911706 -62625553 - MYSERV-int LTR ERVK -1412 5138 4273 5 1270 360 242 103 90 chr5 89911904 89912049 -62625210 - B1_Mur3 SINE Alu -2 147 1 5 1270 352 333 14 66 chr5 89912392 89912604 -62624655 + MLT1A LTR MaLR 172 372 -2 5 1270 271 190 86 25 chr5 89912709 89912790 -62624469 - L1MD LINE L1 -970 5176 5091 5 1270 922 265 5 0 chr5 89913274 89913485 -62623774 + B3 SINE B2 2 213 -3 5 1270 26 0 0 0 chr5 89913714 89913740 -62623519 + AT_rich Low_complexity Low_complexity 1 26 0 5 1270 502 304 29 23 chr5 89913740 89913912 -62623347 + B4A SINE B4 4 176 -116 5 1270 35 71 0 0 chr5 89913914 89913984 -62623275 + AT_rich Low_complexity Low_complexity 1 70 0 5 1270 713 246 72 40 chr5 89913984 89914186 -62623073 - RLTR15 LTR ERVK -45 314 106 5 1270 665 56 11 0 chr5 89914186 89914276 -62622983 + (TC)n Simple_repeat Simple_repeat 2 92 0 5 1270 713 246 72 40 chr5 89914276 89914377 -62622882 - RLTR15 LTR ERVK -254 105 1 5 1270 21 71 0 0 chr5 89914388 89914430 -62622829 + AT_rich Low_complexity Low_complexity 1 42 0 5 1271 3442 34 2 5 chr5 89916063 89916505 -62620754 + L1Md_F2 LINE L1 5148 5588 -295 5 1271 8145 44 3 3 chr5 89916506 89917499 -62619760 + L1Md_F2 LINE L1 5590 6582 0 5 1271 375 67 40 13 chr5 89917634 89917710 -62619549 + (TTTG)n Simple_repeat Simple_repeat 1 78 0 5 1271 1112 81 0 7 chr5 89917901 89918036 -62619223 + B1_Mus1 SINE Alu 1 135 -13 5 1271 240 59 0 0 chr5 89918036 89918070 -62619189 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 5 1271 1112 81 0 7 chr5 89918070 89918083 -62619176 + B1_Mus1 SINE Alu 136 148 0 5 1271 305 324 23 69 chr5 89918683 89918966 -62618293 - L1ME3B LINE L1 -198 5981 5710 5 1271 1049 78 7 0 chr5 89918974 89919116 -62618143 + B1_Mus1 SINE Alu 4 146 -2 5 1271 214 178 0 0 chr5 89919116 89919161 -62618098 + (CAA)n Simple_repeat Simple_repeat 1 45 0 5 1271 319 152 29 48 chr5 89919247 89919351 -62617908 + (TATATG)n Simple_repeat Simple_repeat 3 104 0 5 1271 1187 282 49 35 chr5 89919413 89919840 -62617419 + BGLII_B LTR ERVK 1 433 -8 5 1271 594 221 17 77 chr5 89921010 89921177 -62616082 - ORR1D2 LTR MaLR 0 379 222 5 1271 1071 97 0 0 chr5 89921485 89921639 -62615620 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 5 1271 193 382 72 16 chr5 89921805 89921930 -62615329 - L2c LINE L2 -6 3381 3250 5 1271 1553 79 67 0 chr5 89921959 89922213 -62615046 - MusHAL1 LINE L1 -628 2084 1814 5 1271 23 0 0 0 chr5 89923879 89923902 -62613357 + AT_rich Low_complexity Low_complexity 1 23 0 5 1271 25 31 0 0 chr5 89923941 89923973 -62613286 + AT_rich Low_complexity Low_complexity 1 32 0 5 1271 343 324 10 118 chr5 89924919 89925122 -62612137 - RMER4A LTR ERVK -253 213 33 5 1271 627 148 15 7 chr5 89925874 89926010 -62611249 + CT-rich Low_complexity Low_complexity 2 138 0 5 1271 360 0 0 0 chr5 89926019 89926059 -62611200 + (TATG)n Simple_repeat Simple_repeat 3 42 0 5 1271 248 229 29 0 chr5 89926097 89926167 -62611092 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1271 213 219 65 52 chr5 89926176 89926253 -62611006 - ID4 SINE ID -4 79 2 5 1271 212 179 0 0 chr5 89927409 89927448 -62609811 + A-rich Low_complexity Low_complexity 1 39 0 5 1271 22 0 0 0 chr5 89929186 89929208 -62608051 + AT_rich Low_complexity Low_complexity 1 22 0 5 1271 180 0 0 0 chr5 89929686 89929706 -62607553 + (C)n Simple_repeat Simple_repeat 1 20 0 5 1271 374 255 104 43 chr5 89930934 89931098 -62606161 - MER96B DNA hAT -67 350 177 5 1271 367 267 11 34 chr5 89931713 89931802 -62605457 - B4 SINE B4 -100 192 106 5 1271 456 200 56 19 chr5 89931818 89931925 -62605334 - B3 SINE B2 0 216 106 5 1271 195 184 0 0 chr5 89931945 89931983 -62605276 + GA-rich Low_complexity Low_complexity 1 38 0 5 1271 212 209 23 0 chr5 89931987 89932030 -62605229 - B3 SINE B2 -133 83 40 5 1271 1143 81 0 0 chr5 89932367 89932515 -62604744 - B1_Mus1 SINE Alu 0 148 1 5 1271 347 145 14 0 chr5 89932683 89932752 -62604507 + (TA)n Simple_repeat Simple_repeat 2 71 0 5 1271 21 0 0 0 chr5 89933008 89933029 -62604230 + AT_rich Low_complexity Low_complexity 1 21 0 5 1271 490 323 72 28 chr5 89934089 89934379 -62602880 + MER90 LTR ERV1 27 329 -246 5 1271 603 369 85 40 chr5 89934432 89934912 -62602347 - LTR83 LTR ERVL -225 555 54 5 1271 973 119 155 0 chr5 89935764 89935932 -62601327 - B2_Mm2 SINE B2 0 195 2 5 1271 297 0 0 0 chr5 89936922 89936955 -62600304 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1271 528 16 0 0 chr5 89936956 89937017 -62600242 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1271 204 111 67 0 chr5 89937020 89937065 -62600194 + (TATG)n Simple_repeat Simple_repeat 3 50 0 5 1271 16337 57 31 6 chr5 89937186 89939538 -62597721 + MusHAL1 LINE L1 155 2565 -147 5 1271 684 168 0 8 chr5 89939768 89939900 -62597359 + Lx4A LINE L1 6927 7057 -1 5 1271 30 89 0 0 chr5 89940010 89940089 -62597170 + AT_rich Low_complexity Low_complexity 1 79 0 6 1271 184 79 25 50 chr5 89940127 89940167 -62597092 + C-rich Low_complexity Low_complexity 2 40 0 6 1271 229 219 75 45 chr5 89940186 89940253 -62597006 - Lx8 LINE L1 -149 7324 7256 6 1271 6038 105 16 8 chr5 89940273 89941225 -62596034 + IAPEy-int LTR ERVK 100 1058 -6455 6 1271 20715 48 2 6 chr5 89941225 89943946 -62593313 + IAPEy-int LTR ERVK 4804 7513 0 6 1271 3137 53 13 0 chr5 89943946 89944326 -62592933 + IAPEY_LTR LTR ERVK 1 385 0 6 1271 544 278 163 20 chr5 89944331 89944577 -62592682 + Lx8 LINE L1 6961 7241 -232 6 1271 508 266 35 85 chr5 89944585 89944703 -62592556 + ORR1E LTR MaLR 6 118 -241 6 1271 5840 89 116 77 chr5 89944703 89945697 -62591562 + RLTR13D4 LTR ERVK 1 1033 0 6 1271 508 266 35 85 chr5 89945697 89945779 -62591480 + ORR1E LTR MaLR 119 196 -163 6 1271 276 188 0 0 chr5 89945779 89945848 -62591411 + CT-rich Low_complexity Low_complexity 2 70 0 6 1271 289 255 182 32 chr5 89945849 89946003 -62591256 + ORR1E LTR MaLR 201 377 -2 6 1271 198 0 0 0 chr5 89946135 89946157 -62591102 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1271 6594 34 6 0 chr5 89946478 89947273 -62589986 + L1Md_F3 LINE L1 5785 6584 0 6 1271 4321 197 83 35 chr5 89948626 89949758 -62587501 - Lx7 LINE L1 -5 7691 6506 6 1271 421 223 26 88 chr5 89952350 89952463 -62584796 + PB1D10 SINE Alu 2 107 -10 6 1271 28 0 0 0 chr5 89952737 89952765 -62584494 + AT_rich Low_complexity Low_complexity 1 28 0 6 1271 297 0 0 0 chr5 89955001 89955034 -62582225 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1271 510 17 0 0 chr5 89955034 89955092 -62582167 + (GA)n Simple_repeat Simple_repeat 2 60 0 6 1271 319 135 58 0 chr5 89955093 89955145 -62582114 + HAL1-3A_ME LINE L1 1976 2030 -828 6 1271 486 0 0 0 chr5 89955199 89955253 -62582006 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1271 1209 55 0 0 chr5 89957252 89957398 -62579861 + B1_Mm SINE Alu 1 146 -1 6 1271 339 85 0 0 chr5 89957400 89957447 -62579812 + (GAAAA)n Simple_repeat Simple_repeat 2 48 0 6 1271 189 0 0 0 chr5 89958803 89958824 -62578435 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6 1271 1182 48 0 39 chr5 89958825 89958978 -62578281 - B1_Mus2 SINE Alu 0 147 1 6 1271 462 286 50 28 chr5 89960077 89960257 -62577002 + MER57C2 LTR ERV1 246 429 -5 6 1271 8652 2 0 0 chr5 89960951 89962228 -62575031 - L1Md_A LINE L1 0 6582 5306 6 1271 12409 5 0 0 chr5 89962228 89963698 -62573561 + L1Md_A LINE L1 3841 5310 -573 6 1271 201 323 31 0 chr5 89963959 89964024 -62573235 + L2 LINE L2 3004 3070 -349 6 1271 289 266 76 0 chr5 89964707 89964786 -62572473 - RSINE1 SINE B4 -10 155 71 6 1271 1339 129 0 24 chr5 89965211 89965418 -62571841 + 7SLRNA srpRNA srpRNA 1 202 -112 6 1271 279 133 0 0 chr5 89965433 89965478 -62571781 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1271 1042 97 21 0 chr5 89966043 89966188 -62571071 - B1_Mus1 SINE Alu 0 148 1 6 1271 188 301 167 24 chr5 89966877 89967003 -62570256 + MIR SINE MIR 84 227 -35 6 1271 4900 223 145 44 chr5 89967799 89969443 -62567816 + RLTR22_Mur LTR ERVK 1 1672 -176 6 1271 3828 92 36 5 chr5 89970870 89971425 -62565834 + L1_Mus3 LINE L1 6063 6634 -4 6 1271 219 36 0 0 chr5 89971663 89971691 -62565568 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1271 33 0 0 0 chr5 89972126 89972159 -62565100 + AT_rich Low_complexity Low_complexity 1 33 0 6 1271 473 264 146 23 chr5 89972199 89972370 -62564889 + B4A SINE B4 27 218 -74 6 1271 226 341 83 67 chr5 89972576 89972937 -62564322 - MLT1C LTR MaLR -36 431 65 6 1271 350 237 15 0 chr5 89973355 89973431 -62563828 + B3A SINE B2 5 81 -135 6 1271 215 244 0 0 chr5 89973438 89973483 -62563776 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1271 502 240 40 40 chr5 89973486 89973612 -62563647 + B3A SINE B2 73 198 0 6 1271 495 314 0 0 chr5 89975712 89975817 -62561442 + PB1D7 SINE Alu 9 113 -7 6 1271 573 339 11 0 chr5 89976705 89976885 -62560374 - B3A SINE B2 -16 182 1 6 1271 349 263 174 17 chr5 89977071 89977249 -62560010 + L1MD LINE L1 4896 5101 -1045 6 1271 753 236 124 0 chr5 89977262 89977440 -62559819 + B3 SINE B2 10 209 -7 6 1271 417 363 75 71 chr5 89977839 89978361 -62558898 + LTR33C LTR ERVL 19 542 -87 6 1271 702 312 52 19 chr5 89978698 89978910 -62558349 + ID_B1 SINE B4 6 224 0 6 1271 247 266 34 192 chr5 89978774 89978951 -62558308 + B1_Mur3 SINE Alu 1 149 0 6 1271 1017 297 52 30 chr5 89979333 89979638 -62557621 - MTEb LTR MaLR -4 375 64 6 1271 441 338 123 51 chr5 89979713 89980461 -62556798 + L2 LINE L2 2020 2821 -598 6 1271 953 261 108 54 chr5 89981757 89982089 -62555170 - ORR1E LTR MaLR -9 350 1 6 1271 260 148 0 47 chr5 89983074 89983159 -62554100 + A-rich Low_complexity Low_complexity 1 81 0 6 1271 320 302 69 15 chr5 89985140 89985271 -62551988 + L1M5 LINE L1 3053 3190 -2956 6 1271 287 280 56 69 chr5 89985285 89985421 -62551838 - ORR1E LTR MaLR -14 365 239 6 1271 3458 28 2 0 chr5 89985712 89986107 -62551152 - MTA_Mm LTR MaLR 0 396 1 6 1271 9559 21 1 0 chr5 89986107 89987204 -62550055 - MTA_Mm-int LTR MaLR 0 1098 1 6 1271 3471 25 2 0 chr5 89987204 89987599 -62549660 - MTA_Mm LTR MaLR 0 396 1 6 1271 399 21 0 0 chr5 89987720 89987768 -62549491 + (TGAG)n Simple_repeat Simple_repeat 4 51 0 6 1271 2466 95 50 28 chr5 89988072 89988472 -62548787 - RLTR9E LTR ERVK 0 409 1 6 1271 328 286 27 45 chr5 89989167 89989277 -62547982 - PB1D10 SINE Alu -8 109 2 6 1271 286 154 26 0 chr5 89989800 89989878 -62547381 + (TA)n Simple_repeat Simple_repeat 2 81 0 6 1271 465 319 59 27 chr5 89990729 89990916 -62546343 - MLT1A0 LTR MaLR -172 193 1 6 1271 366 317 32 0 chr5 89991018 89991141 -62546118 - L1MB1 LINE L1 -210 5979 5853 6 1271 836 241 78 35 chr5 89993794 89994052 -62543207 - RMER5 LTR ERV1 0 534 266 6 1271 262 220 33 11 chr5 89994603 89994695 -62542564 + Lx2B LINE L1 6905 6998 -2 6 1271 297 0 0 0 chr5 89994724 89994757 -62542502 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1271 420 20 0 0 chr5 89994757 89994805 -62542454 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1271 546 57 0 0 chr5 89995732 89995802 -62541457 + (TAAA)n Simple_repeat Simple_repeat 1 70 0 6 1271 22 35 0 0 chr5 89996015 89996044 -62541215 + AT_rich Low_complexity Low_complexity 1 29 0 6 1271 433 283 80 49 chr5 89998015 89998402 -62538857 - HAL1 LINE L1 -814 1693 1295 6 1271 477 0 0 0 chr5 89998506 89998559 -62538700 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1271 704 254 51 28 chr5 89998673 89998851 -62538408 + B3A SINE B2 1 182 -16 6 1271 486 0 0 0 chr5 89999111 89999165 -62538094 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1271 312 288 14 0 chr5 89999296 89999369 -62537890 + PB1D10 SINE Alu 37 110 -7 6 1271 641 243 130 0 chr5 89999831 90000000 -62537259 + URR1B DNA MER1_type 1 191 -34 6 1271 238 263 0 38 chr5 90001347 90001426 -62535833 + T-rich Low_complexity Low_complexity 2 77 0 1 1271 35820 70 7 6 chr5 90001440 90007609 -62529650 - L1Md_F2 LINE L1 -11 6571 396 2 1271 1256 233 120 49 chr5 90008212 90008578 -62528681 + MTD LTR MaLR 1 392 -27 3 1271 738 221 7 0 chr5 90008585 90008721 -62528538 - B1_Mur1 SINE Alu 0 149 13 4 1271 265 281 8 116 chr5 90008624 90008753 -62528506 - MT2B LTR ERVL -338 263 149 5 1271 233 184 41 0 chr5 90008726 90008775 -62528484 + MTD LTR MaLR 369 419 0 3 1271 2010 195 43 25 chr5 90008779 90009358 -62527901 - RLTR31A_Mm LTR ERVK 0 557 1 6 1271 367 363 39 43 chr5 90009487 90009902 -62527357 - Lx8 LINE L1 -1 7472 7060 7 1271 1480 311 48 26 chr5 90009920 90010507 -62526752 - Lx8 LINE L1 -495 6978 6379 7 1271 316 320 177 15 chr5 90010881 90011084 -62526175 - MLT1H2 LTR MaLR -60 429 194 8 1271 255 210 32 0 chr5 90012762 90012824 -62524435 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 9 1271 1506 156 5 0 chr5 90012827 90013051 -62524208 + URR1B DNA MER1_type 1 225 0 1 1271 604 286 61 20 chr5 90013427 90013623 -62523636 + B3 SINE B2 2 205 -11 1 1271 832 86 7 19 chr5 90013660 90013814 -62523445 - RMER17B LTR ERVK -501 457 306 1 1271 234 0 0 0 chr5 90015151 90015177 -62522082 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1271 679 291 17 27 chr5 90015492 90015685 -62521574 - B3A SINE B2 -34 182 2 1 1271 22 0 0 0 chr5 90016367 90016389 -62520870 + AT_rich Low_complexity Low_complexity 1 22 0 1 1271 188 268 0 0 chr5 90016850 90016891 -62520368 + MIRm SINE MIR 228 268 -8 1 1271 661 298 55 118 chr5 90017527 90017908 -62519351 + ORR1E LTR MaLR 3 359 0 1 1271 610 171 9 0 chr5 90017911 90018016 -62519243 + ORR1E-int LTR MaLR 3 108 -1472 1 1271 775 363 31 122 chr5 90018432 90019249 -62518010 + ORR1E-int LTR MaLR 101 842 -738 1 1271 511 217 19 0 chr5 90019248 90019354 -62517905 - ORR1D1 LTR MaLR -265 109 2 1 1271 459 323 53 12 chr5 90019354 90019523 -62517736 + MLT1D LTR MaLR 321 496 -9 1 1271 515 260 117 38 chr5 90019547 90019787 -62517472 + MLT1D-int LTR MaLR 185 443 -928 1 1271 646 273 48 24 chr5 90020574 90020784 -62516475 - B3 SINE B2 -1 215 1 2 1271 25 0 0 0 chr5 90020914 90020939 -62516320 + AT_rich Low_complexity Low_complexity 1 25 0 2 1271 351 65 0 0 chr5 90021097 90021143 -62516116 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 1271 351 0 0 0 chr5 90021143 90021181 -62516078 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1271 362 236 53 60 chr5 90021677 90021815 -62515444 - L1MB1 LINE L1 -4 6185 6048 2 1271 1232 172 22 9 chr5 90021969 90022192 -62515067 + URR1A DNA MER1_type 1 226 0 2 1271 252 385 17 0 chr5 90023077 90023194 -62514065 + MLT1F2 LTR MaLR 17 135 -425 2 1271 333 0 0 0 chr5 90023586 90023623 -62513636 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1271 3919 202 46 40 chr5 90024779 90025670 -62511589 + RMER13B LTR ERVK 4 899 -9 2 1271 631 243 132 5 chr5 90025745 90025935 -62511324 - B3 SINE B2 -1 215 2 2 1271 562 49 24 0 chr5 90025975 90026057 -62511202 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 3 1271 4351 208 48 32 chr5 90026092 90027064 -62510195 - Lx5 LINE L1 0 7050 6063 3 1271 289 283 80 10 chr5 90027131 90027231 -62510028 - MLT1K LTR MaLR -118 477 371 3 1271 2497 312 95 35 chr5 90027324 90027796 -62509463 - Lx8 LINE L1 -2 7471 6945 3 1271 615 14 0 0 chr5 90027796 90027868 -62509391 + (CA)n Simple_repeat Simple_repeat 2 73 0 3 1271 2497 312 95 35 chr5 90027868 90028575 -62508684 - Lx8 LINE L1 -529 6944 6201 3 1271 744 12 0 0 chr5 90028575 90028660 -62508599 + (TC)n Simple_repeat Simple_repeat 2 86 0 3 1271 2497 312 95 35 chr5 90028660 90028777 -62508482 - Lx8 LINE L1 -1273 6200 6098 3 1271 31773 96 12 2 chr5 90029653 90031491 -62505768 - L1_Mus2 LINE L1 -1 6565 4717 3 1271 2321 93 132 11 chr5 90031491 90031839 -62505420 + RLTR10 LTR ERVK 1 390 0 3 1271 31773 133 11 41 chr5 90031839 90036274 -62500985 - L1_Mus2 LINE L1 -1167 4716 393 3 1271 2546 259 25 114 chr5 90037484 90038447 -62498812 - RMER17B LTR ERVK -77 881 5 3 1271 3920 115 27 11 chr5 90038828 90039383 -62497876 + LTRIS2 LTR ERV1 1 564 0 3 1271 1051 295 62 46 chr5 90039535 90039905 -62497354 - MTEa LTR MaLR -1 378 3 4 1271 1460 96 5 0 chr5 90040006 90040194 -62497065 + B2_Mm2 SINE B2 2 190 -5 4 1271 189 0 0 0 chr5 90040318 90040339 -62496920 + (TTA)n Simple_repeat Simple_repeat 1 21 0 4 1271 254 143 20 0 chr5 90040938 90040987 -62496272 + CT-rich Low_complexity Low_complexity 3 52 0 4 1271 799 193 42 14 chr5 90041038 90041180 -62496079 - B1_Mus1 SINE Alu -1 147 2 4 1271 451 292 66 55 chr5 90041750 90041931 -62495328 + MER58A DNA MER1_type 33 215 -9 4 1271 303 339 101 62 chr5 90041936 90042273 -62494986 + L1ME3A LINE L1 5808 6157 -16 4 1271 530 233 148 66 chr5 90042333 90042650 -62494609 + RMER10A LTR ERVL 84 426 -16 4 1271 272 27 0 26 chr5 90044224 90044262 -62492997 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 4 1271 4020 136 62 30 chr5 90044369 90045092 -62492167 + RMER6A LTR ERVK 8 753 -3 4 1271 201 39 0 0 chr5 90045218 90045244 -62492015 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1271 391 260 52 37 chr5 90045298 90045434 -62491825 + MER73 LTR ERVL 108 245 -399 5 1271 282 322 127 32 chr5 90045590 90045747 -62491512 + MER73 LTR ERVL 437 608 -36 5 158 5819 98 110 19 chr5 90045816 90046701 -62490558 - Lx2 LINE L1 0 6997 6033 5 1272 531 60 0 0 chr5 90047952 90048019 -62489240 + B1_Mus2 SINE Alu 1 67 -80 5 1272 357 24 0 0 chr5 90048024 90048066 -62489193 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 5 1272 521 243 28 0 chr5 90051430 90051574 -62485685 + MER67C LTR ERV1 359 506 -205 5 1272 284 115 60 40 chr5 90051596 90051696 -62485563 + (TA)n Simple_repeat Simple_repeat 1 102 0 5 1272 351 365 105 8 chr5 90051717 90051974 -62485285 - LTR80B LTR ERVL -118 466 185 5 1272 14082 139 74 13 chr5 90052281 90056176 -62481083 - Lx2A1 LINE L1 0 7008 2844 5 1272 483 331 14 0 chr5 90056216 90056361 -62480898 + B3A SINE B2 1 147 -51 5 1272 229 103 73 0 chr5 90057553 90057621 -62479638 + (TA)n Simple_repeat Simple_repeat 1 73 0 6 1272 23 0 0 0 chr5 90058468 90058491 -62478768 + AT_rich Low_complexity Low_complexity 1 23 0 6 1272 7343 92 4 5 chr5 90058505 90059978 -62477281 - L1_Mus3 LINE L1 0 6638 5165 6 1272 2557 82 5 28 chr5 90060026 90060417 -62476842 - Lx LINE L1 -10 6644 6263 6 1272 216 0 0 0 chr5 90060465 90060489 -62476770 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6 1272 26 50 0 0 chr5 90063282 90063322 -62473937 + AT_rich Low_complexity Low_complexity 1 40 0 6 1272 917 244 161 24 chr5 90064613 90064911 -62472348 + MTD LTR MaLR 80 418 -1 6 1272 317 335 1 3 chr5 90064912 90065034 -62472225 - Lx8 LINE L1 -935 6761 6641 6 1272 758 336 48 23 chr5 90065162 90065303 -62471956 - Lx8 LINE L1 -860 6613 6476 6 1272 2998 76 13 8 chr5 90065303 90065701 -62471558 - MTB LTR MaLR 0 400 1 6 1272 758 336 48 23 chr5 90065701 90065955 -62471304 - Lx8 LINE L1 -998 6475 6208 6 1272 228 229 16 32 chr5 90066067 90066130 -62471129 + MER82 DNA MER2_type 190 251 -402 6 1272 278 148 0 18 chr5 90066156 90066211 -62471048 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1272 485 259 124 110 chr5 90067243 90067525 -62469734 + B4A SINE B4 1 286 -6 7 1272 214 191 0 0 chr5 90067837 90067879 -62469380 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7 1272 5637 85 11 17 chr5 90068257 90069068 -62468191 - RLTR13D1 LTR ERVK 0 806 1 7 1272 562 154 0 0 chr5 90069078 90069169 -62468090 - RMER16-int LTR ERVK -30 5778 5688 7 1272 4329 153 44 29 chr5 90069167 90070676 -62466583 - RMER16-int LTR ERVK -692 5116 2870 7 1272 270 0 0 0 chr5 90070676 90070706 -62466553 + (TC)n Simple_repeat Simple_repeat 2 31 0 7 1272 513 141 0 0 chr5 90070712 90070797 -62466462 + (TA)n Simple_repeat Simple_repeat 1 85 0 7 1272 5034 113 37 36 chr5 90070798 90071166 -62466093 - ETnERV2-int LTR ERVK -3488 3918 3567 7 1272 1227 41 0 14 chr5 90071166 90071314 -62465945 - B1_Mm SINE Alu 0 147 2 7 1272 5034 113 37 36 chr5 90071314 90071888 -62465371 - ETnERV2-int LTR ERVK -3840 3566 2975 7 1272 5564 127 12 30 chr5 90072040 90072295 -62464964 - L1_Mm LINE L1 -1251 4632 4370 7 1272 2496 133 45 52 chr5 90072295 90072780 -62464479 - RLTR45 LTR ERVK 0 482 1 7 1272 5564 127 12 30 chr5 90072780 90073544 -62463715 - L1_Mm LINE L1 -1514 4369 3632 7 1272 7546 73 9 3 chr5 90073541 90074663 -62462596 + L1_Mus3 LINE L1 5491 6619 -19 8 1272 729 305 11 11 chr5 90074670 90074859 -62462400 + B3A SINE B2 6 194 -4 8 1272 1323 70 36 41 chr5 90075405 90075600 -62461659 - B2_Mm2 SINE B2 -1 194 1 8 1272 682 96 37 0 chr5 90075837 90075972 -62461287 + (TA)n Simple_repeat Simple_repeat 2 141 0 8 1272 29 0 0 0 chr5 90077238 90077267 -62459992 + AT_rich Low_complexity Low_complexity 1 29 0 8 1272 253 401 0 29 chr5 90077670 90077806 -62459453 + MLT1A0 LTR MaLR 1 132 -233 8 1272 272 295 84 25 chr5 90077819 90077964 -62459295 + ORR1B2 LTR MaLR 47 192 -167 8 1272 353 258 197 7 chr5 90078214 90078366 -62458893 - MER2 DNA MER2_type -132 213 33 8 1272 334 283 121 32 chr5 90078643 90078767 -62458492 - B3 SINE B2 -81 135 1 8 1272 21 36 0 0 chr5 90079092 90079120 -62458139 + AT_rich Low_complexity Low_complexity 1 28 0 8 1272 682 242 140 0 chr5 90079422 90079600 -62457659 + ID_B1 SINE B4 2 204 -20 9 1272 771 42 0 0 chr5 90079605 90079700 -62457559 + (CAAAG)n Simple_repeat Simple_repeat 3 97 0 9 1272 997 201 109 36 chr5 90080678 90080952 -62456307 - RMER1C Other Other 0 1342 1049 9 1272 869 140 0 29 chr5 90080974 90081114 -62456145 - B1_Mur3 SINE Alu -1 148 13 9 1272 218 405 19 12 chr5 90081879 90082039 -62455220 - L2a LINE L2 -2 3424 3264 9 1272 216 67 0 0 chr5 90082821 90082851 -62454408 + (TTTTTG)n Simple_repeat Simple_repeat 4 33 0 9 1272 2206 279 104 23 chr5 90083030 90083960 -62453299 - Lx9 LINE L1 -281 7363 6358 9 1272 513 165 0 0 chr5 90083974 90084095 -62453164 + (CA)n Simple_repeat Simple_repeat 2 122 0 9 1272 306 54 0 0 chr5 90084096 90084133 -62453126 + HAL1-3A_ME LINE L1 1976 2012 -846 9 1272 4791 257 96 45 chr5 90084334 90085024 -62452235 - Lx9 LINE L1 -1670 5974 5179 9 1272 1335 142 14 18 chr5 90085024 90085247 -62452012 + URR1B DNA MER1_type 1 222 -3 9 1272 4791 257 78 50 chr5 90085247 90086732 -62450527 - Lx9 LINE L1 -669 5178 3663 9 1272 407 19 19 0 chr5 90086732 90086784 -62450475 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1272 4791 257 78 50 chr5 90086784 90086962 -62450297 - Lx9 LINE L1 -2185 3662 3476 9 1272 271 261 15 0 chr5 90086966 90087031 -62450228 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1272 635 286 28 11 chr5 90087031 90087211 -62450048 - B3A SINE B2 -15 183 1 1 1272 562 317 89 39 chr5 90087338 90087797 -62449462 - L1MA4 LINE L1 -359 5941 5460 1 1272 21 0 0 0 chr5 90087905 90087926 -62449333 + AT_rich Low_complexity Low_complexity 1 21 0 1 1272 1450 257 12 32 chr5 90088007 90088438 -62448821 - Lx9 LINE L1 -162 7482 7061 1 1272 1081 88 0 26 chr5 90088538 90088689 -62448570 - B1_Mus1 SINE Alu -1 147 1 1 1272 253 342 104 9 chr5 90089331 90089446 -62447813 - B1F2 SINE Alu 0 149 24 1 1272 243 294 0 0 chr5 90089706 90089849 -62447410 + GA-rich Low_complexity Low_complexity 1 143 0 1 1272 473 18 0 0 chr5 90090098 90090154 -62447105 - L1_Mus2 LINE L1 -526 6040 5985 1 1272 3233 67 2 50 chr5 90090154 90090610 -62446649 + L1_Mus2 LINE L1 6132 6565 -1 1 1272 24 67 0 0 chr5 90090611 90090656 -62446603 + AT_rich Low_complexity Low_complexity 1 45 0 1 1272 4398 40 13 0 chr5 90091360 90091890 -62445369 - L1Md_F2 LINE L1 0 6582 6046 1 1272 763 107 4 97 chr5 90092201 90092899 -62444360 + GA-rich Low_complexity Low_complexity 1 633 0 1 1272 603 170 60 20 chr5 90095027 90095161 -62442098 - RMER5 LTR ERV1 -65 469 330 1 1272 526 321 21 0 chr5 90095161 90095301 -62441958 + RSINE1 SINE B4 3 145 -20 1 1272 537 250 172 48 chr5 90095342 90095615 -62441644 - RMER5 LTR ERV1 -195 339 33 1 1272 249 250 43 149 chr5 90095792 90095886 -62441373 + Tigger1 DNA MER2_type 2074 2157 -261 1 1272 617 217 8 40 chr5 90095924 90096049 -62441210 - B1_Mur2 SINE Alu -6 143 23 1 1272 639 135 254 7 chr5 90096073 90096215 -62441044 + URR1A DNA MER1_type 50 226 0 1 1272 277 322 110 12 chr5 90096267 90096440 -62440819 + Tigger1 DNA MER2_type 2227 2416 -2 1 1272 13588 21 0 0 chr5 90096646 90098973 -62438286 - L1Md_T LINE L1 0 6582 4256 1 1272 842 287 101 89 chr5 90099601 90100075 -62437184 - RMER13B LTR ERVK -227 681 202 1 1272 892 174 18 23 chr5 90100063 90100234 -62437025 - RMER20A LTR ERVK -346 170 1 1 1272 219 318 188 0 chr5 90103280 90103434 -62433825 - MIRb SINE MIR -40 228 46 1 1272 519 230 0 34 chr5 90104435 90104552 -62432707 - PB1D10 SINE Alu -4 113 1 1 1272 442 225 0 11 chr5 90104686 90104776 -62432483 + PB1D10 SINE Alu 21 109 -8 1 1272 1282 98 5 32 chr5 90107070 90107260 -62429999 - B2_Mm1t SINE B2 -7 186 2 1 1272 1206 114 29 0 chr5 90107631 90107806 -62429453 - B2_Mm2 SINE B2 -14 181 2 1 1272 263 85 21 0 chr5 90109250 90109297 -62427962 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1 1272 23 33 0 0 chr5 90109422 90109452 -62427807 + AT_rich Low_complexity Low_complexity 1 30 0 1 1272 270 21 64 0 chr5 90109629 90109676 -62427583 + (TTG)n Simple_repeat Simple_repeat 2 51 0 1 1272 1079 79 0 7 chr5 90109676 90109816 -62427443 - B1_Mus2 SINE Alu -8 139 1 1 1272 437 0 0 19 chr5 90110076 90110130 -62427129 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1272 241 264 0 0 chr5 90110163 90110216 -62427043 - Lx7 LINE L1 -388 7308 7256 1 1272 1651 185 57 6 chr5 90110287 90110640 -62426619 + RLTR20B3 LTR ERVK 1 371 -206 1 1272 456 51 0 0 chr5 90110640 90110699 -62426560 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1272 322 198 70 140 chr5 90110706 90110806 -62426453 + RLTR20B3 LTR ERVK 485 577 0 1 1272 987 201 74 33 chr5 90110940 90111182 -62426077 + 7SK RNA RNA 1 252 -79 1 1272 245 327 139 0 chr5 90111476 90111577 -62425682 - B4A SINE B4 -176 116 2 1 1272 31 26 0 0 chr5 90111579 90111617 -62425642 + AT_rich Low_complexity Low_complexity 1 38 0 1 1272 189 94 0 0 chr5 90115204 90115236 -62422023 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 1 1272 718 193 106 22 chr5 90115236 90115416 -62421843 - B2_Mm2 SINE B2 0 195 1 1 1272 295 336 42 14 chr5 90116864 90117081 -62420178 - L1MC4 LINE L1 -385 7657 7435 1 1272 338 294 19 10 chr5 90117851 90117954 -62419305 + MIR SINE MIR 81 184 -78 1 1272 198 103 0 0 chr5 90118335 90118364 -62418895 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1272 23 33 0 0 chr5 90118769 90118799 -62418460 + AT_rich Low_complexity Low_complexity 1 30 0 1 1272 183 247 0 0 chr5 90118841 90118914 -62418345 + CT-rich Low_complexity Low_complexity 1 73 0 1 1272 646 258 61 140 chr5 90119363 90119864 -62417395 + RLTR11B LTR ERVK 1 493 -35 1 1272 879 81 130 0 chr5 90119881 90120004 -62417255 + B1_Mus1 SINE Alu 1 139 -9 1 1272 180 0 0 0 chr5 90120004 90120024 -62417235 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1272 746 196 7 42 chr5 90120138 90120282 -62416977 + URR1B DNA MER1_type 2 140 -85 1 1272 851 46 0 0 chr5 90120630 90120738 -62416521 - B1_Mm SINE Alu -11 136 29 1 1272 1078 76 0 0 chr5 90121649 90121780 -62415479 + B1_Mus1 SINE Alu 1 131 -17 1 1272 31 26 0 0 chr5 90121808 90121846 -62415413 + AT_rich Low_complexity Low_complexity 1 38 0 1 1272 350 129 0 16 chr5 90123637 90123700 -62413559 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 1272 235 295 67 0 chr5 90124509 90124614 -62412645 + PB1D10 SINE Alu 1 112 -5 1 1272 1081 187 35 0 chr5 90126153 90126356 -62410903 - B3 SINE B2 -6 210 1 1 1272 437 270 16 50 chr5 90128259 90128380 -62408879 + PB1D7 SINE Alu 4 120 0 1 1272 295 143 17 35 chr5 90128632 90128690 -62408569 + MLT1A0 LTR MaLR 300 356 -9 1 1272 24 32 0 0 chr5 90128942 90128973 -62408286 + AT_rich Low_complexity Low_complexity 1 31 0 1 1272 27 0 0 0 chr5 90129582 90129609 -62407650 + AT_rich Low_complexity Low_complexity 1 27 0 1 1272 206 118 0 0 chr5 90131745 90131779 -62405480 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1272 784 251 0 42 chr5 90132305 90132496 -62404763 + B3 SINE B2 20 202 -14 1 1272 21 0 0 0 chr5 90133183 90133204 -62404055 + AT_rich Low_complexity Low_complexity 1 21 0 1 1272 385 328 66 58 chr5 90133687 90133945 -62403314 + MLT1D LTR MaLR 12 257 -370 1 1272 273 324 18 26 chr5 90134573 90134687 -62402572 - MIRb SINE MIR -44 224 112 1 1272 374 286 32 48 chr5 90134804 90134929 -62402330 - B1F SINE Alu -20 129 7 1 1272 405 129 0 0 chr5 90135245 90135315 -62401944 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1272 227 200 39 39 chr5 90135317 90135395 -62401864 + Lx9 LINE L1 7503 7580 -64 1 1272 276 30 0 0 chr5 90136973 90137006 -62400253 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 1272 387 0 0 0 chr5 90138373 90138416 -62398843 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1272 743 322 29 0 chr5 90139321 90139526 -62397733 + ID_B1 SINE B4 11 221 -3 1 1272 234 0 0 0 chr5 90140028 90140054 -62397205 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1272 240 111 0 0 chr5 90141236 90141272 -62395987 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1272 2203 262 115 70 chr5 90141631 90142404 -62394855 + RMER1A Other Other 3 517 -549 1 1272 531 0 0 0 chr5 90142404 90142463 -62394796 + (TCC)n Simple_repeat Simple_repeat 1 59 0 1 1272 2203 258 111 87 chr5 90142463 90143080 -62394179 + RMER1A Other Other 394 1029 -1 1 1272 269 291 51 39 chr5 90143344 90143508 -62393751 + MIRc SINE MIR 24 186 -82 1 1272 290 266 88 29 chr5 90144271 90144431 -62392828 - MIRm SINE MIR -25 237 69 1 1272 371 297 154 12 chr5 90145048 90145263 -62391996 + MIR SINE MIR 2 232 -30 1 1272 2050 176 73 13 chr5 90146101 90146498 -62390761 + MTC LTR MaLR 1 421 0 1 1272 825 274 158 22 chr5 90147710 90148027 -62389232 + ORR1D2 LTR MaLR 5 364 -6 1 1272 22 56 0 0 chr5 90149765 90149801 -62387458 + AT_rich Low_complexity Low_complexity 1 36 0 1 1272 245 290 149 11 chr5 90153021 90153115 -62384144 - PB1D9 SINE Alu -13 107 1 1 1272 367 301 116 69 chr5 90153249 90153481 -62383778 + B4A SINE B4 15 257 -35 1 1272 3298 276 32 34 chr5 90153910 90154284 -62382975 + Lx8 LINE L1 6070 6435 -1038 1 1272 3254 96 32 18 chr5 90154284 90154522 -62382737 + L1_Mus3 LINE L1 6132 6368 -270 1 1272 404 29 28 28 chr5 90154522 90154594 -62382665 + (CAAA)n Simple_repeat Simple_repeat 2 73 0 1 1272 189 74 0 0 chr5 90154596 90154623 -62382636 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 1 1272 3254 96 32 18 chr5 90154623 90154881 -62382378 + L1_Mus3 LINE L1 6369 6638 0 1 1272 3298 276 32 34 chr5 90154881 90155551 -62381708 + Lx8 LINE L1 6436 7109 -364 1 1272 315 0 0 0 chr5 90155753 90155788 -62381471 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1272 23 33 0 0 chr5 90157118 90157148 -62380111 + AT_rich Low_complexity Low_complexity 1 30 0 1 1272 266 311 121 38 chr5 90158012 90158169 -62379090 - MLT1L LTR MaLR -57 553 384 1 1272 233 321 102 19 chr5 90160137 90160245 -62377014 + ORR1E LTR MaLR 4 120 -239 1 1272 359 318 88 105 chr5 90160739 90161034 -62376225 + MLT1E2 LTR MaLR 255 568 -112 1 1272 483 295 0 8 chr5 90160983 90161113 -62376146 + B1F SINE Alu 16 144 -5 1 1272 315 327 78 22 chr5 90161186 90161330 -62375929 + MLT1E2 LTR MaLR 457 606 -18 1 1272 871 72 65 0 chr5 90161428 90161581 -62375678 + (GGAAA)n Simple_repeat Simple_repeat 2 164 0 1 1272 1261 296 112 35 chr5 90161707 90162562 -62374697 - L1MEc LINE L1 -5444 956 36 1 1272 216 0 0 0 chr5 90163463 90163487 -62373772 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1272 294 353 46 0 chr5 90163787 90163825 -62373434 + MLT1N2 LTR MaLR 403 562 0 1 1272 377 301 9 17 chr5 90163825 90163940 -62373319 + LTR33B LTR ERVL 390 503 0 1 1272 403 286 60 8 chr5 90165243 90165377 -62371882 + HAL1-2a_MD LINE L1 2352 2492 -532 1 1272 444 37 0 0 chr5 90165875 90165929 -62371330 + (TA)n Simple_repeat Simple_repeat 1 54 0 1 1272 29 0 0 0 chr5 90166476 90166505 -62370754 + AT_rich Low_complexity Low_complexity 1 29 0 1 1272 25 65 0 0 chr5 90166696 90166742 -62370517 + AT_rich Low_complexity Low_complexity 1 46 0 1 1272 505 250 9 0 chr5 90166833 90166941 -62370318 + B1_Mur1 SINE Alu 1 109 -40 2 1272 3095 39 0 0 chr5 90167364 90167750 -62369509 + L1Md_F2 LINE L1 5201 5586 -297 2 1272 7529 64 13 3 chr5 90167750 90168724 -62368535 + L1Md_F2 LINE L1 5587 6570 -12 2 1272 289 188 12 12 chr5 90168786 90168804 -62368455 + (TA)n Simple_repeat Simple_repeat 1 18 0 2 1272 2271 179 96 17 chr5 90168804 90169345 -62367914 + RLTR31A_Mm LTR ERVK 1 584 0 2 1272 289 188 12 12 chr5 90169345 90169407 -62367852 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1272 998 291 47 0 chr5 90169552 90169810 -62367449 + B4 SINE B4 1 270 -22 2 1272 249 83 0 0 chr5 90169867 90169903 -62367356 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1272 49 18 0 0 chr5 90170800 90170856 -62366403 + AT_rich Low_complexity Low_complexity 1 56 0 2 1272 297 151 0 0 chr5 90170856 90170909 -62366350 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1272 2119 64 0 7 chr5 90171199 90171498 -62365761 + L1Md_F2 LINE L1 6237 6533 -49 2 1272 785 121 21 0 chr5 90171497 90171637 -62365622 + L1_Mur2 LINE L1 4853 4995 -882 2 1272 2753 106 103 40 chr5 90171633 90172031 -62365228 - L1_Mur2 LINE L1 -1026 4851 4435 2 1272 1159 61 0 39 chr5 90172031 90172049 -62365210 - B1_Mus1 SINE Alu 0 148 136 2 1272 288 0 0 0 chr5 90172049 90172081 -62365178 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1272 1159 61 0 39 chr5 90172081 90172216 -62365043 - B1_Mus1 SINE Alu -13 135 1 2 1272 2753 106 103 40 chr5 90172216 90172272 -62364987 - L1_Mur2 LINE L1 -1443 4434 4378 2 1272 192 40 0 0 chr5 90172272 90172297 -62364962 + (TTTAG)n Simple_repeat Simple_repeat 4 28 0 2 1272 2753 106 103 40 chr5 90172297 90172364 -62364895 - L1_Mur2 LINE L1 -1500 4377 4297 2 1272 3509 182 51 22 chr5 90172369 90173132 -62364127 + Lx4B LINE L1 6253 7037 -21 2 1272 537 16 0 0 chr5 90173132 90173194 -62364065 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1272 304 275 22 130 chr5 90173226 90173261 -62363998 + MT2B LTR ERVL 136 155 -446 2 1272 489 222 93 75 chr5 90173261 90173368 -62363891 + B1_Mur3 SINE Alu 1 109 -40 2 1272 378 139 0 0 chr5 90173368 90173440 -62363819 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 2 1272 374 321 30 15 chr5 90173511 90173644 -62363615 + L1ME3A LINE L1 2416 2550 -3596 2 1272 863 144 7 41 chr5 90173732 90173877 -62363382 + B1_Mus1 SINE Alu 8 147 -1 2 1272 210 171 0 0 chr5 90173878 90173913 -62363346 + A-rich Low_complexity Low_complexity 1 35 0 2 1272 258 281 68 68 chr5 90173930 90174121 -62363138 + L1ME3A LINE L1 2656 2846 -3300 2 1272 504 93 0 0 chr5 90175685 90175760 -62361499 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 1272 449 335 112 7 chr5 90175950 90176227 -62361032 + L1ME3A LINE L1 5657 5962 -211 2 1272 412 319 29 0 chr5 90176466 90176604 -62360655 + B1F2 SINE Alu 8 149 0 2 1272 22 0 0 0 chr5 90176716 90176738 -62360521 + AT_rich Low_complexity Low_complexity 1 22 0 2 1273 329 380 16 112 chr5 90177831 90178089 -62359170 - L2b LINE L2 -1 3374 3142 2 1273 354 337 85 37 chr5 90178693 90178881 -62358378 - MLT1A LTR MaLR -9 365 169 2 1273 1798 165 81 51 chr5 90179930 90180301 -62356958 + ORR1C2 LTR MaLR 1 382 -2 2 1273 402 21 0 0 chr5 90180447 90180494 -62356765 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1273 237 297 0 129 chr5 90180590 90180706 -62356553 - MTD LTR MaLR 0 419 319 2 1273 430 238 9 38 chr5 90180694 90180799 -62356460 - MTD LTR MaLR -300 119 18 2 1273 213 39 0 0 chr5 90180800 90180826 -62356433 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2 1273 633 294 159 38 chr5 90181665 90182085 -62355174 - MLT1E1A LTR MaLR 0 680 210 2 1273 243 232 36 0 chr5 90182105 90182161 -62355098 - MLT1E1A LTR MaLR -586 68 11 2 1273 279 209 45 18 chr5 90183469 90183581 -62353678 + GA-rich Low_complexity Low_complexity 3 117 0 2 1273 220 346 74 0 chr5 90183592 90183673 -62353586 - RSINE1 SINE B4 -21 144 58 2 1273 398 338 86 55 chr5 90186217 90186508 -62350751 + L1MEf LINE L1 571 870 -5330 2 1273 616 157 0 0 chr5 90186615 90186723 -62350536 + Lx9 LINE L1 7295 7402 -242 2 1273 189 107 0 0 chr5 90187416 90187444 -62349815 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 2 1273 882 245 20 10 chr5 90187853 90188055 -62349204 + B3 SINE B2 2 205 -11 2 1273 1568 180 184 58 chr5 90189079 90189475 -62347784 + RLTR41 LTR ERV1 1 446 0 2 1273 1055 178 31 0 chr5 90190264 90190455 -62346804 - URR1A DNA MER1_type -29 197 1 2 1273 556 319 0 0 chr5 90190486 90190624 -62346635 + ID_B1 SINE B4 86 223 -1 2 1273 253 0 54 0 chr5 90190674 90190711 -62346548 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1273 390 241 11 0 chr5 90190811 90190898 -62346361 + ID_B1 SINE B4 135 222 -2 2 1273 275 279 34 51 chr5 90191985 90192102 -62345157 + PB1D10 SINE Alu 1 115 -2 2 1273 850 252 24 9 chr5 90193961 90194173 -62343086 + B3 SINE B2 1 215 -1 2 1273 1123 277 113 67 chr5 90194955 90195496 -62341763 + RMER13A LTR ERVK 1 566 -294 2 1273 325 203 0 0 chr5 90195500 90195559 -62341700 + MTEa LTR MaLR 321 379 0 2 1273 306 289 21 0 chr5 90195695 90195792 -62341467 - MIR SINE MIR -86 176 78 2 1273 183 42 0 0 chr5 90196434 90196458 -62340801 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2 1273 354 206 18 64 chr5 90197198 90197307 -62339952 + L1M3 LINE L1 4561 4664 -1476 2 1273 252 237 78 17 chr5 90197340 90197456 -62339803 + L1M3 LINE L1 5017 5139 -1001 2 1273 593 241 95 58 chr5 90197457 90197677 -62339582 - MTE2b LTR MaLR -13 406 208 2 1273 1141 69 7 0 chr5 90197837 90197982 -62339277 + B1_Mus2 SINE Alu 1 146 -1 2 1273 1024 280 29 23 chr5 90198026 90198370 -62338889 + Lx5 LINE L1 6697 7042 -8 2 1273 186 133 0 0 chr5 90199023 90199053 -62338206 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 1273 26 30 0 0 chr5 90199392 90199425 -62337834 + AT_rich Low_complexity Low_complexity 1 33 0 2 1273 665 279 6 6 chr5 90200649 90200808 -62336451 - B4A SINE B4 -12 280 122 2 1273 2091 200 79 50 chr5 90201867 90202300 -62334959 + RLTR20A LTR ERVK 6 441 -100 2 1273 288 0 0 0 chr5 90202300 90202332 -62334927 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1273 2091 200 79 50 chr5 90202332 90202418 -62334841 + RLTR20A LTR ERVK 442 539 -2 2 1273 2386 205 9 18 chr5 90203153 90203764 -62333495 + MYSERV16_I-int LTR ERVK 2 486 -1840 2 1273 320 154 31 0 chr5 90204620 90204685 -62332574 + (CATA)n Simple_repeat Simple_repeat 4 70 0 2 1273 570 290 23 37 chr5 90204703 90204918 -62332341 + B3 SINE B2 1 212 -4 2 1273 392 200 11 0 chr5 90205372 90205467 -62331792 + (CATATA)n Simple_repeat Simple_repeat 3 98 0 2 1273 746 215 21 7 chr5 90205626 90205771 -62331488 + B1_Mur4 SINE Alu 1 147 -3 2 1273 338 195 0 13 chr5 90205852 90205930 -62331329 + CT-rich Low_complexity Low_complexity 2 78 0 2 1273 226 244 33 55 chr5 90206687 90206778 -62330481 + MLT1A1 LTR MaLR 307 395 -13 2 1273 192 97 0 0 chr5 90206882 90206913 -62330346 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1273 587 146 46 8 chr5 90207114 90207245 -62330014 - Lx9 LINE L1 -7 7637 7502 2 1273 960 216 50 0 chr5 90207246 90207468 -62329791 + Lx9 LINE L1 6970 7202 -442 2 1273 264 354 31 10 chr5 90207835 90207932 -62329327 - MLT1J2 LTR MaLR -329 119 21 2 1273 180 321 73 36 chr5 90208310 90208420 -62328839 + L2b LINE L2 3226 3339 -36 2 1273 188 357 56 84 chr5 90209018 90209232 -62328027 + L2 LINE L2 2856 3063 -356 2 1273 189 0 0 0 chr5 90210610 90210631 -62326628 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2 1273 260 159 139 42 chr5 90211491 90211563 -62325696 + MIRc SINE MIR 175 253 -15 2 1273 207 114 0 0 chr5 90212343 90212378 -62324881 + (CAGA)n Simple_repeat Simple_repeat 4 38 0 2 1273 229 267 17 0 chr5 90213870 90213930 -62323329 - MLT1E2 LTR MaLR 0 627 567 2 1273 4048 7 0 0 chr5 90214363 90214812 -62322447 + L1Md_A LINE L1 6134 6582 0 2 1273 3946 36 12 2 chr5 90214940 90215435 -62321824 - L1Md_F3 LINE L1 -213 6371 5872 2 1273 1565 56 93 0 chr5 90215435 90215649 -62321610 + L1Md_F3 LINE L1 6351 6584 0 2 1273 681 207 22 0 chr5 90216352 90216487 -62320772 + B1_Mur1 SINE Alu 1 138 -11 2 1273 285 342 33 33 chr5 90216571 90216722 -62320537 + MIR3 SINE MIR 50 200 -8 2 1273 304 316 17 17 chr5 90216922 90217041 -62320218 - MER5A DNA MER1_type -70 119 1 2 1273 638 317 99 40 chr5 90217996 90218019 -62319240 - B4A SINE B4 -2 290 273 2 1273 375 60 0 0 chr5 90218019 90218069 -62319190 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1273 638 317 99 40 chr5 90218069 90218318 -62318941 - B4A SINE B4 -20 272 2 2 1273 235 248 94 16 chr5 90218455 90218554 -62318705 + MLT2B4 LTR ERVL 466 588 -13 2 1273 642 313 50 54 chr5 90219563 90219843 -62317416 + MT2A LTR ERVL 189 467 -66 2 1273 991 101 0 0 chr5 90220156 90220294 -62316965 + B1_Mus1 SINE Alu 11 148 0 2 1273 865 336 167 23 chr5 90220622 90221179 -62316080 + MER82 DNA MER2_type 11 647 -6 2 1273 522 0 0 0 chr5 90223066 90223124 -62314135 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1273 22 0 0 0 chr5 90223174 90223196 -62314063 + AT_rich Low_complexity Low_complexity 1 22 0 2 1273 489 34 0 0 chr5 90223515 90223574 -62313685 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1273 1094 282 11 0 chr5 90223579 90223841 -62313418 - B4A SINE B4 -25 267 3 2 1273 354 328 76 53 chr5 90224721 90224985 -62312274 - L1ME2 LINE L1 0 6164 5895 2 1273 254 289 25 8 chr5 90225094 90225216 -62312043 - L1ME2 LINE L1 -786 5378 5255 2 1273 213 277 0 0 chr5 90225232 90225279 -62311980 + GA-rich Low_complexity Low_complexity 2 48 0 2 1273 24 0 0 0 chr5 90225345 90225369 -62311890 + AT_rich Low_complexity Low_complexity 1 24 0 2 1273 296 277 0 35 chr5 90226080 90226166 -62311093 + GA-rich Low_complexity Low_complexity 6 88 0 2 1273 321 208 0 0 chr5 90226167 90226239 -62311020 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 1273 207 150 50 0 chr5 90227075 90227135 -62310124 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1273 319 218 202 39 chr5 90229020 90229149 -62308110 + HAL1-3A_ME LINE L1 2284 2433 -425 2 1273 962 168 36 6 chr5 90230289 90230457 -62306802 + Lx4B LINE L1 6778 6950 -108 2 1273 278 382 30 6 chr5 90230539 90230705 -62306554 + MIR SINE MIR 47 216 -46 2 1273 6123 35 1 3 chr5 90230708 90231448 -62305811 - RLTR13B3 LTR ERVK 0 929 191 3 1273 5886 19 0 0 chr5 90231448 90232115 -62305144 - L1Md_T LINE L1 -168 5715 5049 3 1273 8359 6 0 0 chr5 90232115 90232984 -62304275 + L1Md_T LINE L1 5714 6582 0 3 1273 1762 10 0 0 chr5 90232985 90233188 -62304071 - RLTR13B3 LTR ERVK -726 203 1 3 1273 186 118 0 0 chr5 90233476 90233510 -62303749 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1273 6531 214 27 41 chr5 90233825 90234638 -62302621 + Lx7 LINE L1 5388 6196 -1500 3 1273 387 0 0 0 chr5 90234638 90234681 -62302578 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1273 6531 242 58 42 chr5 90234681 90235856 -62301403 + Lx7 LINE L1 6197 7412 -284 3 1273 24 32 0 0 chr5 90236143 90236174 -62301085 + AT_rich Low_complexity Low_complexity 1 31 0 3 1273 30 27 0 0 chr5 90236237 90236274 -62300985 + AT_rich Low_complexity Low_complexity 1 37 0 3 1273 573 336 43 12 chr5 90236666 90236919 -62300340 + Arthur1 DNA Tip100 486 746 -3201 3 1273 298 282 164 40 chr5 90237061 90237286 -62299973 - ORR1E LTR MaLR -106 253 1 3 1273 546 287 99 35 chr5 90237384 90237727 -62299532 + Arthur1 DNA Tip100 3566 3930 -17 3 1273 243 257 13 63 chr5 90238901 90238980 -62298279 + MLT1A0 LTR MaLR 1 75 -290 3 1273 7190 168 91 43 chr5 90239163 90239391 -62297868 + Lx7 LINE L1 4139 4361 -1519 3 1273 330 26 0 0 chr5 90239391 90239430 -62297829 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1273 7190 168 91 43 chr5 90239430 90240566 -62296693 + Lx7 LINE L1 4362 5601 -279 3 1273 1965 202 116 5 chr5 90240566 90240945 -62296314 - MTC LTR MaLR 0 421 1 3 1273 7190 197 77 42 chr5 90240945 90241976 -62295283 + Lx7 LINE L1 5602 6669 -1027 3 1273 25 51 0 0 chr5 90242159 90242198 -62295061 + AT_rich Low_complexity Low_complexity 1 39 0 3 1273 210 294 116 12 chr5 90244289 90244375 -62292884 - L2a LINE L2 -7 3419 3325 3 1273 2170 68 7 3 chr5 90244411 90244693 -62292566 + L1_Mus3 LINE L1 6353 6635 -3 3 1273 219 88 0 0 chr5 90245944 90245978 -62291281 + (CCCCAG)n Simple_repeat Simple_repeat 2 35 0 3 1273 21 36 0 0 chr5 90246172 90246200 -62291059 + AT_rich Low_complexity Low_complexity 1 28 0 3 1273 291 302 107 34 chr5 90247188 90247366 -62289893 + L1MA6 LINE L1 6072 6262 -38 3 1273 22 70 0 0 chr5 90247518 90247561 -62289698 + AT_rich Low_complexity Low_complexity 1 43 0 3 1273 35 0 0 0 chr5 90248797 90248832 -62288427 + AT_rich Low_complexity Low_complexity 1 35 0 3 1273 4508 197 30 74 chr5 90248870 90249896 -62287363 + Lx7 LINE L1 6716 7696 0 3 1273 548 286 125 11 chr5 90250228 90250412 -62286847 - B3 SINE B2 -11 205 1 3 1273 22 0 0 0 chr5 90250649 90250671 -62286588 + AT_rich Low_complexity Low_complexity 1 22 0 3 1273 1716 202 62 32 chr5 90250701 90251106 -62286153 + MTD LTR MaLR 1 417 -2 3 1273 310 256 50 161 chr5 90251206 90251448 -62285811 + Charlie1a DNA MER1_type 1223 1437 -18 3 1273 207 0 0 0 chr5 90252172 90252195 -62285064 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1273 2919 280 98 27 chr5 90252415 90253430 -62283829 + Lx8 LINE L1 6387 7473 0 3 1273 23 0 0 0 chr5 90253891 90253914 -62283345 + AT_rich Low_complexity Low_complexity 1 23 0 3 1273 817 308 207 48 chr5 90253914 90254705 -62282554 + L1MDa LINE L1 277 1193 -5440 3 1273 263 32 0 0 chr5 90255169 90255200 -62282059 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 3 1273 1314 117 0 2 chr5 90255200 90255730 -62281529 + (TGGA)n Simple_repeat Simple_repeat 1 528 0 3 1273 1176 111 0 0 chr5 90255754 90255934 -62281325 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 3 1273 3017 206 72 6 chr5 90256134 90256785 -62280474 - Lx9 LINE L1 -10 7634 6941 3 1273 465 34 0 0 chr5 90256798 90256857 -62280402 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1273 529 204 196 129 chr5 90256859 90257007 -62280252 - B3A SINE B2 -34 164 1 3 1273 213 39 0 0 chr5 90257166 90257192 -62280067 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1273 511 308 32 80 chr5 90257248 90257435 -62279824 - ID_B1 SINE B4 -45 179 2 3 1273 22 0 0 0 chr5 90257621 90257643 -62279616 + AT_rich Low_complexity Low_complexity 1 22 0 3 1273 269 233 32 57 chr5 90257747 90257870 -62279389 + L1MDa LINE L1 4274 4393 -2144 3 1273 2536 213 86 107 chr5 90258275 90259746 -62277513 + RMER1B Other Other 11 1012 -54 3 1273 3298 45 133 7 chr5 90259746 90260168 -62277091 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1273 2536 169 93 30 chr5 90260168 90260224 -62277035 + RMER1B Other Other 1013 1063 -3 3 1273 303 322 35 14 chr5 90260218 90260363 -62276896 + L1MDa LINE L1 4398 4545 -1986 3 1273 365 309 39 8 chr5 90261063 90261190 -62276069 - B4A SINE B4 -119 173 43 3 1273 1067 280 157 42 chr5 90261195 90262300 -62274959 - L1MA9 LINE L1 -273 6039 4809 3 1273 312 119 0 0 chr5 90262400 90262459 -62274800 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1273 233 246 13 40 chr5 90264025 90264101 -62273158 + PB1 SINE Alu 41 114 -13 3 1273 186 43 0 0 chr5 90264324 90264347 -62272912 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1273 210 405 0 0 chr5 90267218 90267297 -62269962 + MIRb SINE MIR 167 245 -23 3 1273 235 146 42 0 chr5 90268806 90268854 -62268405 + ORR1E LTR MaLR 27 76 -283 3 1273 380 304 11 0 chr5 90269221 90269313 -62267946 - PB1D10 SINE Alu -17 100 8 3 1273 254 300 0 59 chr5 90269454 90269539 -62267720 + ID4 SINE ID 1 80 -3 3 1273 219 36 0 0 chr5 90269540 90269568 -62267691 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 1273 232 312 94 0 chr5 90269639 90269767 -62267492 + L1MA8 LINE L1 6079 6218 -73 3 1273 255 31 0 0 chr5 90269767 90269799 -62267460 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1273 387 145 0 0 chr5 90271244 90271313 -62265946 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 3 1273 182 270 0 73 chr5 90272901 90272969 -62264290 + L2c LINE L2 3002 3064 -323 3 1273 549 291 21 0 chr5 90273043 90273184 -62264075 + RSINE1 SINE B4 2 145 -20 3 1273 2570 121 16 13 chr5 90274357 90274744 -62262515 + ORR1B1 LTR MaLR 1 388 -6 3 1273 477 183 37 46 chr5 90275346 90275455 -62261804 + Lx9 LINE L1 7222 7329 -315 3 1273 206 239 0 0 chr5 90276052 90276098 -62261161 + A-rich Low_complexity Low_complexity 1 46 0 3 1273 205 329 48 12 chr5 90276720 90276803 -62260456 + MER5A DNA MER1_type 39 124 -65 3 1273 193 274 0 31 chr5 90277039 90277103 -62260156 - L2 LINE L2 -527 2892 2831 3 1273 258 339 38 49 chr5 90277378 90277561 -62259698 - L2 LINE L2 -949 2470 2290 3 1273 731 259 151 81 chr5 90278153 90278355 -62258904 + MT2B LTR ERVL 16 313 -288 3 1273 381 22 0 0 chr5 90278355 90278401 -62258858 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1273 731 235 128 89 chr5 90278401 90278679 -62258580 + MT2B LTR ERVL 314 601 0 3 1273 246 319 11 0 chr5 90278769 90278860 -62258399 + MER5A DNA MER1_type 75 166 -23 3 1273 249 108 0 0 chr5 90279045 90279082 -62258177 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1273 314 229 284 39 chr5 90279676 90279803 -62257456 + RSINE1 SINE B4 2 159 -6 3 1273 378 0 0 0 chr5 90279906 90279948 -62257311 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1273 216 0 0 0 chr5 90279948 90279971 -62257288 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 1273 447 19 0 0 chr5 90279971 90280022 -62257237 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 1273 333 0 0 0 chr5 90280070 90280107 -62257152 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 3 1273 1269 178 55 4 chr5 90280916 90281187 -62256072 + Lx9 LINE L1 7360 7644 0 3 1273 334 214 35 23 chr5 90281426 90281512 -62255747 + B4A SINE B4 190 276 -16 3 1273 291 54 0 0 chr5 90281516 90281553 -62255706 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1273 1068 62 0 0 chr5 90281672 90281802 -62255457 + B1_Mus2 SINE Alu 5 134 -13 3 1273 21 0 0 0 chr5 90282231 90282252 -62255007 + AT_rich Low_complexity Low_complexity 1 21 0 3 1273 513 0 0 0 chr5 90282293 90282350 -62254909 + (GGGGA)n Simple_repeat Simple_repeat 4 60 0 3 1273 1257 90 0 0 chr5 90282353 90282530 -62254729 + (GAGAA)n Simple_repeat Simple_repeat 1 177 0 3 1273 242 316 11 128 chr5 90282695 90282780 -62254479 + L1M4c LINE L1 1593 1670 -4714 3 1273 1180 81 0 0 chr5 90282780 90282928 -62254331 + B1_Mus1 SINE Alu 1 148 0 3 1273 242 316 11 128 chr5 90282928 90283194 -62254065 + L1M4c LINE L1 1671 1903 -4481 3 1273 303 28 0 0 chr5 90283239 90283275 -62253984 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 3 1273 4130 266 45 29 chr5 90283283 90284497 -62252762 + Lx9 LINE L1 6361 7593 -51 3 1273 1128 211 58 63 chr5 90284556 90285031 -62252228 + L1M4c LINE L1 1979 2450 -3926 3 1273 875 224 20 10 chr5 90285032 90285230 -62252029 + B3 SINE B2 6 205 -11 3 1273 326 23 23 0 chr5 90285548 90285591 -62251668 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1273 347 127 16 0 chr5 90285615 90285678 -62251581 + (GGA)n Simple_repeat Simple_repeat 3 66 0 3 1273 860 297 57 16 chr5 90285713 90286079 -62251180 - MLT1B LTR MaLR -9 381 1 3 1273 303 318 9 27 chr5 90286515 90286625 -62250634 + L1M4c LINE L1 2408 2515 -3867 3 1273 237 305 134 18 chr5 90286641 90286858 -62250401 + L1M4c LINE L1 2583 2824 -3552 3 1273 368 232 0 0 chr5 90286943 90287012 -62250247 + ID4_ SINE ID 4 72 -11 3 1273 320 0 0 24 chr5 90287022 90287063 -62250196 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 3 1273 29 0 0 0 chr5 90290901 90290930 -62246329 + AT_rich Low_complexity Low_complexity 1 29 0 3 1273 208 272 196 0 chr5 90291241 90291333 -62245926 - MIRb SINE MIR -132 136 27 3 1273 222 180 33 0 chr5 90291384 90291445 -62245814 + A-rich Low_complexity Low_complexity 2 64 0 3 1273 351 0 0 0 chr5 90291698 90291737 -62245522 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1273 951 208 25 19 chr5 90293803 90294030 -62243229 + Lx7 LINE L1 4763 5001 -1145 3 1273 7227 190 50 27 chr5 90294027 90295841 -62241418 + Lx7 LINE L1 5413 7278 -418 3 1273 344 243 26 53 chr5 90295837 90295950 -62241309 + Lx5 LINE L1 6930 7039 -11 3 1273 22 0 0 0 chr5 90295957 90295979 -62241280 + AT_rich Low_complexity Low_complexity 1 22 0 3 1273 570 203 134 25 chr5 90295979 90296136 -62241123 + Lx7 LINE L1 7260 7433 -263 3 1273 414 0 0 0 chr5 90296138 90296184 -62241075 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1273 255 61 0 0 chr5 90296247 90296280 -62240979 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1273 22 0 0 0 chr5 90297087 90297109 -62240150 + AT_rich Low_complexity Low_complexity 1 22 0 3 1273 477 0 0 0 chr5 90301136 90301189 -62236070 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1273 399 323 131 94 chr5 90301599 90302005 -62235254 - MLT1D LTR MaLR -84 421 1 3 1273 441 54 0 0 chr5 90303294 90303350 -62233909 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1273 327 291 19 56 chr5 90306374 90306534 -62230725 + L1ME3A LINE L1 5899 6052 -121 3 1273 180 0 0 0 chr5 90306536 90306556 -62230703 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1273 3992 48 0 4 chr5 90306584 90307065 -62230194 - L1_Mus1 LINE L1 0 6567 6089 4 1273 259 300 57 24 chr5 90308323 90308446 -62228813 + Tigger5 DNA MER2_type 53 179 -2227 4 159 420 298 9 9 chr5 90308513 90308628 -62228631 + Tigger5 DNA MER2_type 2292 2406 0 4 1274 255 291 12 12 chr5 90308784 90308864 -62228395 + MIRb SINE MIR 180 259 -9 4 1274 603 0 0 0 chr5 90308891 90308958 -62228301 + (TC)n Simple_repeat Simple_repeat 2 68 0 4 1274 214 312 42 126 chr5 90308975 90309118 -62228141 + B1F1 SINE Alu 1 131 -18 4 1274 1381 222 48 43 chr5 90309158 90309400 -62227859 + ORR1D1 LTR MaLR 1 243 -131 4 1274 849 37 0 0 chr5 90309400 90309509 -62227750 + (CCTG)n Simple_repeat Simple_repeat 3 111 0 4 1274 1381 222 48 43 chr5 90309509 90309638 -62227621 + ORR1D1 LTR MaLR 244 373 -1 4 1274 583 204 120 87 chr5 90309638 90309821 -62227438 + B3 SINE B2 21 209 -7 4 1274 206 209 131 27 chr5 90309923 90310003 -62227256 + MIRc SINE MIR 82 165 -103 4 1274 229 255 0 0 chr5 90311740 90311791 -62225468 + GA-rich Low_complexity Low_complexity 2 52 0 4 1274 23 0 0 0 chr5 90312584 90312607 -62224652 + GC_rich Low_complexity Low_complexity 1 23 0 4 1274 504 0 0 0 chr5 90314040 90314096 -62223163 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1274 510 17 0 0 chr5 90314379 90314438 -62222821 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1274 199 325 39 0 chr5 90314505 90314582 -62222677 + MIR SINE MIR 158 237 -25 4 1274 198 91 0 0 chr5 90315029 90315062 -62222197 + (TTG)n Simple_repeat Simple_repeat 1 33 0 4 1274 5033 111 18 27 chr5 90315063 90315831 -62221428 - Lx4A LINE L1 -6 7052 6292 4 1274 398 192 7 172 chr5 90315846 90315991 -62221268 + MTE2a LTR MaLR 2 122 -257 4 1274 270 0 0 0 chr5 90317274 90317304 -62219955 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1274 213 132 0 0 chr5 90317451 90317489 -62219770 + (T)n Simple_repeat Simple_repeat 1 38 0 4 1274 1191 75 17 6 chr5 90319585 90319758 -62217501 + L1Md_F2 LINE L1 6407 6581 -1 4 1274 192 304 0 0 chr5 90319977 90320033 -62217226 - MER5A DNA MER1_type -125 64 9 4 1274 23 0 0 0 chr5 90320315 90320338 -62216921 + AT_rich Low_complexity Low_complexity 1 23 0 4 1274 342 0 0 0 chr5 90320753 90320791 -62216468 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1274 351 222 17 8 chr5 90321954 90322072 -62215187 + CT-rich Low_complexity Low_complexity 2 120 0 4 1274 322 314 107 68 chr5 90322617 90322897 -62214362 + B4A SINE B4 2 292 0 4 1274 1543 201 12 39 chr5 90323546 90323877 -62213382 - MTC LTR MaLR -79 342 21 4 1274 270 0 0 0 chr5 90323879 90323909 -62213350 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1274 28 0 0 0 chr5 90325046 90325074 -62212185 + AT_rich Low_complexity Low_complexity 1 28 0 4 1274 315 65 0 0 chr5 90325350 90325396 -62211863 + (T)n Simple_repeat Simple_repeat 1 46 0 4 1274 261 58 58 0 chr5 90326397 90326449 -62210810 + (TTTTG)n Simple_repeat Simple_repeat 4 58 0 4 1274 266 133 0 0 chr5 90327934 90327986 -62209273 - Lx2B LINE L1 -452 6606 6553 4 1274 180 97 0 0 chr5 90328224 90328255 -62209004 + (CCAA)n Simple_repeat Simple_repeat 1 31 0 4 1274 700 200 52 0 chr5 90328629 90328784 -62208475 + B3A SINE B2 1 163 -35 4 1274 324 0 0 0 chr5 90328789 90328825 -62208434 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1274 280 364 78 6 chr5 90329543 90329709 -62207550 + Tigger5 DNA MER2_type 1 178 -2228 4 1274 330 333 31 25 chr5 90330440 90330603 -62206656 - MLT1K LTR MaLR -416 179 16 4 1274 880 111 33 0 chr5 90330961 90331114 -62206145 + Lx2 LINE L1 6840 6997 0 4 1274 902 270 82 20 chr5 90331461 90331813 -62205446 + Lx7 LINE L1 6957 7330 -366 4 1274 189 0 0 0 chr5 90331828 90331849 -62205410 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1274 21 0 0 0 chr5 90332012 90332033 -62205226 + AT_rich Low_complexity Low_complexity 1 21 0 4 1274 283 255 118 0 chr5 90332043 90332145 -62205114 + B1F SINE Alu 36 149 0 4 1274 324 0 0 0 chr5 90333175 90333211 -62204048 + (TATG)n Simple_repeat Simple_repeat 4 39 0 4 1274 493 336 76 89 chr5 90333827 90333857 -62203402 + LTR33A_ LTR ERVL 27 56 -475 4 1274 1037 191 62 0 chr5 90333857 90334066 -62203193 + URR1B DNA MER1_type 1 222 -3 4 1274 493 336 76 89 chr5 90334066 90334339 -62202920 + LTR33A_ LTR ERVL 57 326 -205 4 1274 564 15 0 0 chr5 90334342 90334407 -62202852 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1274 414 0 0 0 chr5 90335562 90335608 -62201651 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1274 415 286 18 30 chr5 90336546 90336712 -62200547 + MIRb SINE MIR 5 162 -46 4 1274 681 203 0 17 chr5 90337180 90337300 -62199959 - PB1D9 SINE Alu 0 120 3 4 1274 414 244 0 0 chr5 90338222 90338308 -62198951 - MLT2B2 LTR ERVL -427 88 3 4 1274 216 97 0 0 chr5 90338342 90338373 -62198886 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 4 1274 27 0 0 0 chr5 90338722 90338749 -62198510 + AT_rich Low_complexity Low_complexity 1 27 0 4 1274 624 124 0 0 chr5 90339332 90339437 -62197822 + (TG)n Simple_repeat Simple_repeat 1 105 0 4 1274 5510 52 12 3 chr5 90339594 90340274 -62196985 - L1Md_F2 LINE L1 -199 6383 5698 4 1274 450 0 0 0 chr5 90341322 90341372 -62195887 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1274 27 29 0 0 chr5 90341659 90341693 -62195566 + AT_rich Low_complexity Low_complexity 1 34 0 4 1274 739 239 0 36 chr5 90342629 90342794 -62194465 - RSINE1 SINE B4 -4 161 3 4 1274 589 315 38 11 chr5 90343080 90343263 -62193996 + ORR1D1 LTR MaLR 116 303 -71 4 1274 1598 84 58 21 chr5 90343283 90343526 -62193733 + L1_Mus4 LINE L1 5880 6131 -505 4 1274 777 218 29 29 chr5 90343526 90343702 -62193557 - RMER21B LTR ERV1 -350 492 317 4 1274 562 276 121 55 chr5 90343702 90343957 -62193302 + B4A SINE B4 4 269 -23 4 1274 361 66 0 32 chr5 90343957 90344020 -62193239 + (CA)n Simple_repeat Simple_repeat 2 62 0 4 1274 334 307 159 57 chr5 90344588 90345184 -62192075 + L1MD LINE L1 4045 4716 -1430 4 1274 21 0 0 0 chr5 90345543 90345564 -62191695 + AT_rich Low_complexity Low_complexity 1 21 0 4 1274 577 306 133 46 chr5 90345809 90346223 -62191036 + MLT1C LTR MaLR 18 467 0 4 1274 6128 125 31 29 chr5 90346398 90347337 -62189922 + Lx4A LINE L1 6118 7058 0 4 1274 450 0 0 0 chr5 90347605 90347655 -62189604 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1274 320 316 114 0 chr5 90347784 90347898 -62189361 + PB1 SINE Alu 1 127 0 4 1274 189 74 0 0 chr5 90347901 90347928 -62189331 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1274 468 0 0 0 chr5 90347930 90347982 -62189277 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1274 220 319 69 0 chr5 90348133 90348205 -62189054 + PB1D10 SINE Alu 3 79 -38 4 1274 500 8 115 8 chr5 90348222 90348352 -62188907 + (TC)n Simple_repeat Simple_repeat 1 144 0 4 1274 318 125 0 0 chr5 90348807 90348871 -62188388 + L1_Mus3 LINE L1 6575 6638 0 4 1274 2648 78 3 0 chr5 90348947 90349269 -62187990 + ORR1A2 LTR MaLR 5 327 0 4 1274 722 255 152 0 chr5 90350783 90350967 -62186292 + B3 SINE B2 1 212 -4 4 1274 943 142 16 87 chr5 90351083 90351268 -62185991 - B2_Mm2 SINE B2 -19 176 5 4 1274 430 252 143 7 chr5 90351391 90351531 -62185728 - MLT2B1 LTR ERVL -361 159 1 4 1274 405 0 0 0 chr5 90352162 90352207 -62185052 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1274 30 0 0 0 chr5 90352942 90352972 -62184287 + AT_rich Low_complexity Low_complexity 1 30 0 4 1274 606 302 13 20 chr5 90353002 90353154 -62184105 + RSINE1 SINE B4 2 152 -13 4 1274 432 0 0 0 chr5 90353154 90353202 -62184057 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 4 1274 786 256 123 41 chr5 90354077 90354346 -62182913 - B4A SINE B4 0 292 2 4 1274 623 265 21 37 chr5 90354798 90354986 -62182273 + MER53 DNA hAT 8 192 -1 4 1274 645 92 0 0 chr5 90356035 90356133 -62181126 + (GA)n Simple_repeat Simple_repeat 1 98 0 4 1274 316 314 19 9 chr5 90356385 90356491 -62180768 - L1MC1 LINE L1 -8 6325 6219 4 1274 724 308 47 89 chr5 90356912 90357294 -62179965 - MTEb LTR MaLR -13 366 1 4 1274 1201 50 0 0 chr5 90357509 90357648 -62179611 + B1_Mus1 SINE Alu 5 143 -5 4 1274 459 0 0 0 chr5 90357652 90357703 -62179556 + (A)n Simple_repeat Simple_repeat 1 51 0 4 1274 349 323 73 18 chr5 90357783 90357947 -62179312 - MER20 DNA MER1_type -46 173 1 4 1274 276 30 0 0 chr5 90358326 90358359 -62178900 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1274 246 32 0 0 chr5 90359150 90359181 -62178078 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1274 580 198 172 8 chr5 90359181 90359303 -62177956 - B1_Mur3 SINE Alu -3 146 5 4 1274 436 290 32 16 chr5 90359519 90359645 -62177614 + B1F1 SINE Alu 1 128 -21 4 1274 3423 43 35 0 chr5 90362341 90362738 -62174521 - L1Md_F3 LINE L1 -14 6570 6160 4 1274 1005 280 80 20 chr5 90362987 90363533 -62173726 + L1M3 LINE L1 4127 4716 -1424 4 1274 473 31 15 0 chr5 90363533 90363579 -62173680 + (TA)n Simple_repeat Simple_repeat 1 46 0 4 1274 525 32 0 0 chr5 90363579 90363642 -62173617 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1274 473 31 15 0 chr5 90363642 90363660 -62173599 + (TA)n Simple_repeat Simple_repeat 2 20 0 4 1274 21 36 0 0 chr5 90363686 90363714 -62173545 + AT_rich Low_complexity Low_complexity 1 28 0 4 1274 794 264 109 69 chr5 90363715 90364314 -62172945 + Lx9 LINE L1 5840 6565 -1079 4 1274 628 289 10 54 chr5 90364564 90364769 -62172490 + RMER30 DNA MER1_type 6 201 -1 4 1274 962 276 97 8 chr5 90365695 90365962 -62171297 - B4A SINE B4 0 292 2 5 1274 2684 258 72 37 chr5 90366995 90368958 -62168301 + Lx9 LINE L1 3404 7006 -638 5 1274 1057 181 42 111 chr5 90368966 90369423 -62167836 - RMER6C LTR ERVK 0 756 345 5 1274 564 15 0 0 chr5 90369426 90369491 -62167768 + (TC)n Simple_repeat Simple_repeat 1 65 0 5 1274 180 0 0 0 chr5 90369503 90369523 -62167736 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1274 1911 145 185 5 chr5 90369579 90369994 -62167265 + RMER12 LTR ERVK 448 911 -411 5 1274 1502 165 103 0 chr5 90370031 90370304 -62166955 + RMER1B Other Other 742 1042 -24 5 1274 886 289 44 11 chr5 90370329 90370690 -62166569 + L1_Mur3 LINE L1 1600 1972 -3908 5 1274 300 352 11 0 chr5 90370828 90370916 -62166343 + BC1_Mm scRNA scRNA 2 90 -62 5 1274 213 384 15 46 chr5 90370916 90370959 -62166300 + B4 SINE B4 2 128 -164 5 1274 196 214 0 41 chr5 90372109 90372182 -62165077 + CT-rich Low_complexity Low_complexity 3 72 0 5 1274 226 375 62 0 chr5 90372227 90372260 -62164999 - MIRm SINE MIR -12 264 180 5 1274 238 213 43 0 chr5 90372260 90372307 -62164952 - L2c LINE L2 -33 3354 3306 5 1274 608 205 6 68 chr5 90373209 90373371 -62163888 - Lx6 LINE L1 -28 7432 7281 5 1274 567 0 0 0 chr5 90374432 90374495 -62162764 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1274 346 350 111 26 chr5 90375039 90375391 -62161868 - Tigger13a DNA MER2_type -177 594 213 5 1274 588 313 41 0 chr5 90375558 90375705 -62161554 + B3A SINE B2 2 154 -44 5 1274 467 33 16 0 chr5 90375705 90375766 -62161493 + (CATA)n Simple_repeat Simple_repeat 1 62 0 5 1274 612 236 41 0 chr5 90376460 90376583 -62160676 - RSINE1 SINE B4 -36 129 2 5 1274 207 0 0 0 chr5 90376643 90376666 -62160593 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1274 2566 162 206 9 chr5 90376760 90377046 -62160213 - RMER6D LTR ERVK 0 720 386 5 1274 546 16 0 0 chr5 90377046 90377109 -62160150 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1274 2566 147 43 13 chr5 90377109 90377366 -62159893 - RMER6D LTR ERVK -335 385 113 5 1274 395 220 52 132 chr5 90377375 90377511 -62159748 - MTD LTR MaLR -101 320 196 5 1274 8362 34 0 0 chr5 90377519 90378846 -62158413 - L1Md_T LINE L1 0 6582 5256 5 1274 1384 108 35 0 chr5 90378842 90379045 -62158214 + L1Md_A LINE L1 364 573 -6151 5 1274 440 279 102 97 chr5 90379045 90379251 -62158008 - MTD LTR MaLR -208 211 5 5 1274 552 220 102 0 chr5 90379447 90379565 -62157694 + B3 SINE B2 2 131 -85 5 1274 1192 171 62 0 chr5 90379709 90379919 -62157340 - URR1B DNA MER1_type -1 224 2 5 1274 697 206 79 0 chr5 90380181 90380307 -62156952 + B1_Mur2 SINE Alu 1 136 -13 5 1274 468 0 0 0 chr5 90380307 90380359 -62156900 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 5 1274 335 324 0 18 chr5 90380422 90380535 -62156724 - PB1D10 SINE Alu -6 111 1 5 1274 342 254 56 78 chr5 90380553 90380732 -62156527 - MER63D DNA AcHobo -849 212 38 5 1274 238 364 146 0 chr5 90381335 90381445 -62155814 + MER115 DNA Tip100 192 317 -376 5 1274 5307 166 24 15 chr5 90381962 90383130 -62154129 + L1Md_F LINE L1 2 1026 -5493 5 1274 455 253 0 0 chr5 90383158 90383253 -62154006 + ORR1D2 LTR MaLR 1 95 -275 5 1274 37200 33 0 59 chr5 90383298 90387839 -62149420 + L1Md_A LINE L1 963 5307 -579 5 1274 9377 15 0 0 chr5 90387839 90388835 -62148424 + L1Md_A LINE L1 5590 6585 0 5 1274 2618 17 0 0 chr5 90388835 90389128 -62148131 + L1Md_T LINE L1 5294 5586 -297 5 1274 8570 55 0 0 chr5 90389128 90390124 -62147135 + L1Md_T LINE L1 5587 6582 0 5 1274 2240 63 68 34 chr5 90390133 90390429 -62146830 + L1Md_F2 LINE L1 6277 6582 0 5 1274 5512 91 58 0 chr5 90390672 90391408 -62145851 - Lx LINE L1 0 6654 5876 5 1274 447 92 0 0 chr5 90391679 90391744 -62145515 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1274 282 184 0 0 chr5 90391836 90391885 -62145374 + Lx8 LINE L1 7415 7463 -10 5 1274 849 191 0 0 chr5 90392380 90392511 -62144748 + B1_Mur4 SINE Alu 2 132 -18 5 1274 1985 164 31 66 chr5 90393393 90393785 -62143474 - ORR1C1 LTR MaLR 0 378 1 5 1274 1297 312 48 64 chr5 90394657 90395239 -62142020 + Lx8 LINE L1 6459 7031 -442 5 1274 416 203 208 26 chr5 90396015 90396207 -62141052 + RMER5 LTR ERV1 153 379 -155 5 1274 1522 0 11 0 chr5 90396730 90396908 -62140351 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1274 747 212 12 12 chr5 90396908 90397154 -62140105 + CT-rich Low_complexity Low_complexity 1 246 0 5 1274 339 296 78 43 chr5 90397173 90397314 -62139945 - B1F SINE Alu -3 146 1 5 1274 33502 72 1 17 chr5 90397464 90402568 -62134691 + L1Md_F LINE L1 483 5503 -380 5 1274 4106 55 19 0 chr5 90402628 90403103 -62134156 - L1_Mus1 LINE L1 0 6567 6084 5 1274 911 72 7 1 chr5 90403103 90403231 -62134028 + L1_Mus1 LINE L1 5981 6112 -542 5 1274 225 0 0 0 chr5 90404412 90404437 -62132822 + (TTTTTG)n Simple_repeat Simple_repeat 1 25 0 5 1274 1112 191 29 25 chr5 90404446 90404650 -62132609 + B3 SINE B2 1 205 -11 5 1274 450 0 0 0 chr5 90404651 90404701 -62132558 + (TA)n Simple_repeat Simple_repeat 1 50 0 5 1274 243 238 32 0 chr5 90405219 90405282 -62131977 - MLT1A0 LTR MaLR 0 365 301 5 1274 1288 61 0 0 chr5 90405394 90405541 -62131718 + B1_Mus2 SINE Alu 1 147 0 5 1274 390 91 0 0 chr5 90405541 90405596 -62131663 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1274 765 61 0 0 chr5 90405596 90405695 -62131564 + (GGAAA)n Simple_repeat Simple_repeat 2 100 0 5 1274 478 282 147 0 chr5 90406553 90406709 -62130550 + B3A SINE B2 2 180 -18 5 1274 782 255 122 45 chr5 90406949 90407285 -62129974 + MLT1A LTR MaLR 1 362 -12 5 1274 413 335 92 102 chr5 90407579 90408142 -62129117 + L1MC5 LINE L1 6713 7237 -724 5 1274 288 91 0 0 chr5 90408142 90408186 -62129073 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1274 413 335 92 102 chr5 90408186 90408500 -62128759 + L1MC5 LINE L1 7238 7580 -381 5 1274 433 267 47 58 chr5 90409150 90409321 -62127938 - B3 SINE B2 0 216 48 5 1274 1196 238 12 0 chr5 90409359 90409615 -62127644 + Lx9 LINE L1 7118 7376 -268 5 1274 564 177 105 0 chr5 90409855 90409979 -62127280 + Lx9 LINE L1 7348 7484 -160 5 1274 963 153 6 0 chr5 90409979 90410136 -62127123 + ORR1A4 LTR MaLR 1 158 -171 5 1274 484 277 41 28 chr5 90410383 90410528 -62126731 + MLT1A0 LTR MaLR 3 149 -216 5 1274 421 290 53 88 chr5 90410551 90410721 -62126538 + MLT1A0 LTR MaLR 244 407 -1 5 1274 234 0 0 0 chr5 90410973 90410999 -62126260 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1274 584 268 152 9 chr5 90412144 90412472 -62124787 + Arthur1 DNA Tip100 3273 3647 -300 5 1274 549 335 78 24 chr5 90412487 90412781 -62124478 - MER63C DNA AcHobo -238 692 383 5 1274 743 281 81 41 chr5 90412859 90413130 -62124129 - Lx8 LINE L1 0 7473 7192 5 1274 1781 260 32 72 chr5 90413134 90413555 -62123704 + Lx8 LINE L1 6591 6992 -481 5 1274 1807 145 162 10 chr5 90413555 90413869 -62123390 - ORR1B2 LTR MaLR -3 364 3 5 1274 1781 260 32 72 chr5 90413869 90414014 -62123245 + Lx8 LINE L1 6993 7134 -339 5 1274 7034 46 22 1 chr5 90414045 90414857 -62122402 - L1Md_F2 LINE L1 -11 6571 5743 5 1274 288 0 0 0 chr5 90414901 90414933 -62122326 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1274 1723 221 39 0 chr5 90416181 90416258 -62121001 + Lx4B LINE L1 890 974 -6010 5 1274 2984 79 44 19 chr5 90416258 90416669 -62120590 + BGLII LTR ERVK 1 421 0 5 1274 12399 175 34 21 chr5 90416669 90421063 -62116196 + Lx4B LINE L1 975 7055 -3 5 1274 204 250 0 0 chr5 90421110 90421150 -62116109 + A-rich Low_complexity Low_complexity 5 44 0 5 1274 492 18 0 0 chr5 90421632 90421689 -62115570 + (TC)n Simple_repeat Simple_repeat 1 57 0 5 1274 1993 9 0 0 chr5 90423264 90423480 -62113779 - L1Md_A LINE L1 0 6582 6367 5 1274 4668 11 0 1 chr5 90423480 90424191 -62113068 + L1Md_A LINE L1 5370 6079 -503 5 1274 768 229 19 13 chr5 90424707 90424862 -62112397 + B3A SINE B2 2 157 -41 5 1274 191 423 0 0 chr5 90425240 90425318 -62111941 + L2b LINE L2 2957 3034 -341 5 1274 387 0 0 0 chr5 90425465 90425508 -62111751 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1274 248 277 113 47 chr5 90425588 90425694 -62111565 + L2a LINE L2 3276 3388 -38 5 1274 3926 55 8 2 chr5 90427272 90427745 -62109514 - L1Md_F2 LINE L1 -3 6579 6104 5 1274 2106 174 76 13 chr5 90427910 90428385 -62108874 - RLTR31A_Mm LTR ERVK 0 553 1 5 1274 1397 45 0 11 chr5 90428708 90428798 -62108461 + (GAA)n Simple_repeat Simple_repeat 1 90 0 5 1274 1620 0 0 0 chr5 90428798 90428978 -62108281 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 5 1274 1397 45 0 11 chr5 90428978 90429069 -62108190 + (GAA)n Simple_repeat Simple_repeat 1 90 0 5 1274 366 293 126 48 chr5 90429285 90429544 -62107715 + RMER20A LTR ERVK 73 355 -272 5 1274 530 247 152 54 chr5 90429686 90429981 -62107278 - L1MA8 LINE L1 -74 6217 5894 5 1274 32 57 0 0 chr5 90430195 90430248 -62107011 + AT_rich Low_complexity Low_complexity 1 53 0 5 1274 292 95 0 0 chr5 90430542 90430584 -62106675 + MT2A LTR ERVL 492 533 0 5 1274 266 143 0 0 chr5 90430593 90430635 -62106624 + L1MA8 LINE L1 6058 6099 -192 5 1274 237 65 0 0 chr5 90431369 90431400 -62105859 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1274 312 175 18 0 chr5 90431408 90431465 -62105794 - HAL1-3A_ME LINE L1 -825 2033 1976 5 1274 584 307 22 16 chr5 90431481 90431500 -62105759 - B3A SINE B2 -15 183 165 5 1274 1044 111 0 0 chr5 90431500 90431680 -62105579 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1274 584 307 22 16 chr5 90431680 90431842 -62105417 - B3A SINE B2 -34 164 1 5 1274 3561 30 5 10 chr5 90431845 90432243 -62105016 - MTA_Mm LTR MaLR 0 396 1 5 1274 32 81 0 0 chr5 90432378 90432452 -62104807 + AT_rich Low_complexity Low_complexity 1 74 0 5 1274 26 30 0 0 chr5 90432502 90432535 -62104724 + AT_rich Low_complexity Low_complexity 1 33 0 5 1274 246 365 52 14 chr5 90432740 90432951 -62104308 - L1M5 LINE L1 -440 5684 5466 5 1274 342 289 78 64 chr5 90433691 90433909 -62103350 + MLT1D LTR MaLR 25 245 -260 6 1274 260 206 107 27 chr5 90434009 90434084 -62103175 + MLT1D LTR MaLR 303 383 -7 6 1274 6875 59 5 1 chr5 90434155 90434998 -62102261 + L1Md_F LINE L1 294 1139 -5380 6 1274 22975 157 63 5 chr5 90434965 90439110 -62098149 + L1_Mur1 LINE L1 1204 5589 -297 6 159 8707 49 0 5 chr5 90439110 90440111 -62097148 + L1Md_F2 LINE L1 5587 6582 0 6 1275 1350 238 34 30 chr5 90440111 90440155 -62097104 + L1MD LINE L1 5616 5662 -580 6 1275 434 265 61 0 chr5 90440164 90440296 -62096963 - L1MC4 LINE L1 -108 7934 7795 6 1275 551 348 107 0 chr5 90440796 90441049 -62096210 + MLT1F LTR MaLR 3 282 -266 6 1275 374 362 22 17 chr5 90441090 90441270 -62095989 + MLT1F LTR MaLR 366 546 -2 6 1275 21 0 0 0 chr5 90441348 90441369 -62095890 + AT_rich Low_complexity Low_complexity 1 21 0 6 1275 645 283 70 5 chr5 90441411 90441596 -62095663 - B4A SINE B4 -2 290 94 6 1275 258 105 0 0 chr5 90441834 90441872 -62095387 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 6 1275 390 21 0 0 chr5 90441996 90442043 -62095216 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1275 1629 249 56 23 chr5 90442096 90442539 -62094720 - Lx8 LINE L1 -202 7271 6814 6 1275 3601 77 13 7 chr5 90442737 90443197 -62094062 + L1_Mus3 LINE L1 6176 6638 0 6 1275 3050 133 75 32 chr5 90444227 90444830 -62092429 + MTB-int LTR MaLR 549 1578 -2 6 1275 2582 80 108 0 chr5 90444830 90445191 -62092068 + MTB LTR MaLR 1 400 0 6 1275 838 294 41 14 chr5 90445194 90445415 -62091844 - ORR1D2 LTR MaLR -143 227 1 6 1275 21 0 0 0 chr5 90445421 90445442 -62091817 + AT_rich Low_complexity Low_complexity 1 21 0 6 1275 267 54 0 0 chr5 90446250 90446287 -62090972 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 6 1275 449 283 0 0 chr5 90446299 90446419 -62090840 - BC1_Mm scRNA scRNA -32 120 1 6 1275 673 347 92 63 chr5 90447533 90447958 -62089301 + MER74B LTR ERVL 85 521 -101 6 1275 439 358 62 77 chr5 90449784 90450123 -62087136 + ORR1E LTR MaLR 3 336 -23 6 1275 520 174 30 10 chr5 90450248 90450347 -62086912 + B3A SINE B2 5 105 -93 6 1275 21 0 0 0 chr5 90450379 90450400 -62086859 + AT_rich Low_complexity Low_complexity 1 21 0 6 1275 428 105 13 0 chr5 90451197 90451273 -62085986 + (TG)n Simple_repeat Simple_repeat 1 77 0 6 1275 2062 273 51 18 chr5 90451304 90452028 -62085231 + Lx9 LINE L1 6446 7193 -451 6 1275 25 0 0 0 chr5 90452252 90452277 -62084982 + AT_rich Low_complexity Low_complexity 1 25 0 6 1275 6717 62 0 1 chr5 90452377 90453267 -62083992 + L1Md_F2 LINE L1 4698 5586 -297 6 1275 8039 46 3 1 chr5 90453268 90454287 -62082972 + L1Md_F2 LINE L1 5588 6582 0 6 1275 203 0 37 0 chr5 90454378 90454405 -62082854 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 6 1275 219 245 0 0 chr5 90454556 90454605 -62082654 + GA-rich Low_complexity Low_complexity 1 49 0 6 1275 183 391 71 30 chr5 90455110 90455308 -62081951 + MIR SINE MIR 57 262 0 6 1275 782 218 7 0 chr5 90456882 90457029 -62080230 + B1_Mur3 SINE Alu 2 149 0 6 1275 2546 241 92 14 chr5 90457033 90457725 -62079534 + Lx7 LINE L1 6666 7411 -285 6 1275 364 242 23 23 chr5 90457801 90457932 -62079327 + Lx7 LINE L1 7562 7692 -4 6 1275 189 306 16 16 chr5 90458376 90458439 -62078820 - L4 LINE RTE -851 1178 1116 6 1275 201 195 0 0 chr5 90458750 90458791 -62078468 + (TTG)n Simple_repeat Simple_repeat 2 42 0 6 1275 220 354 10 10 chr5 90459278 90459378 -62077881 + L2b LINE L2 3275 3374 -1 6 1275 214 128 51 0 chr5 90459540 90459579 -62077680 + G-rich Low_complexity Low_complexity 3 43 0 6 1275 302 274 73 63 chr5 90459579 90459770 -62077489 + RLTR15 LTR ERVK 99 291 -68 6 1275 207 0 0 0 chr5 90459927 90459950 -62077309 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1275 229 352 65 16 chr5 90459968 90460092 -62077167 - L2b LINE L2 -20 3355 3226 6 1275 1069 75 38 0 chr5 90460359 90460518 -62076741 - L1_Mus3 LINE L1 -1 6637 6473 6 1275 4070 71 20 0 chr5 90460519 90461071 -62076188 + L1_Mus3 LINE L1 5909 6471 -167 6 1275 205 339 16 40 chr5 90461389 90461523 -62075736 + MIR SINE MIR 88 223 -45 6 1275 450 232 0 0 chr5 90463022 90463134 -62074125 + (TA)n Simple_repeat Simple_repeat 2 113 0 6 1275 266 286 50 90 chr5 90463336 90463436 -62073823 + B1F2 SINE Alu 38 133 -16 6 1275 237 83 0 0 chr5 90463439 90463475 -62073784 + (CAGAGA)n Simple_repeat Simple_repeat 2 37 0 6 1275 2682 286 56 67 chr5 90464113 90464483 -62072776 + Lx9 LINE L1 6375 6701 -943 6 1275 1816 155 95 6 chr5 90464483 90464820 -62072439 - ORR1B2 LTR MaLR 0 367 1 6 1275 2682 286 56 67 chr5 90464820 90465545 -62071714 + Lx9 LINE L1 6702 7430 -214 6 1275 921 73 5 43 chr5 90465545 90465731 -62071528 + (CA)n Simple_repeat Simple_repeat 2 180 0 6 1275 2682 286 56 67 chr5 90465731 90465891 -62071368 + Lx9 LINE L1 7431 7616 -28 6 1275 23 54 0 0 chr5 90465911 90465948 -62071311 + AT_rich Low_complexity Low_complexity 1 37 0 6 1275 318 342 44 68 chr5 90467845 90468093 -62069166 - MER102c DNA MER1_type -61 270 29 6 1275 351 368 0 0 chr5 90468147 90468272 -62068987 - MTE-int LTR MaLR -34 1546 1422 6 1275 701 315 19 5 chr5 90468275 90468489 -62068770 - MTE-int LTR MaLR -1230 350 134 6 1275 690 161 56 8 chr5 90468493 90468618 -62068641 + B1_Mur2 SINE Alu 4 134 -15 6 1275 284 278 11 32 chr5 90468618 90468711 -62068548 - RLTR17 LTR ERVK -3 689 599 6 1275 5573 40 0 0 chr5 90468814 90469472 -62067787 + L1Md_F2 LINE L1 5913 6570 -12 6 1275 2268 182 35 50 chr5 90469537 90470081 -62067178 - RLTR31_Mm LTR ERVK -25 536 1 6 1275 320 328 109 0 chr5 90470110 90470238 -62067021 - MTE-int LTR MaLR -1438 142 1 6 1275 420 20 0 0 chr5 90470597 90470646 -62066613 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 6 1275 569 195 50 104 chr5 90470648 90470930 -62066329 - RMER10A LTR ERVL -25 417 1 6 1275 608 298 22 16 chr5 90472225 90472409 -62064850 - MIR SINE MIR -29 233 49 6 1275 33 25 0 0 chr5 90472633 90472673 -62064586 + AT_rich Low_complexity Low_complexity 1 40 0 6 1275 1857 106 9 109 chr5 90472674 90473022 -62064237 + ORR1A4 LTR MaLR 9 321 -8 6 1275 348 202 38 9 chr5 90473026 90473131 -62064128 - Lx9 LINE L1 -20 7624 7517 6 1275 369 0 0 0 chr5 90473132 90473173 -62064086 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1275 3217 219 40 18 chr5 90473185 90473925 -62063334 - Lx9 LINE L1 -200 7444 6688 6 1275 1781 233 152 36 chr5 90473929 90474312 -62062947 - L1_Rod LINE L1 -97 5750 5333 6 1275 443 18 0 18 chr5 90474312 90474369 -62062890 + (GTTTG)n Simple_repeat Simple_repeat 3 58 0 6 1275 324 70 0 0 chr5 90474370 90474413 -62062846 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 6 1275 369 0 0 0 chr5 90474421 90474462 -62062797 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1275 1781 233 152 36 chr5 90474462 90474726 -62062533 - L1_Rod LINE L1 -555 5292 5016 6 1275 1856 114 0 35 chr5 90474730 90475040 -62062219 - L1Md_F2 LINE L1 0 6582 6284 6 1275 190 365 121 7 chr5 90475172 90475321 -62061938 + MIR3 SINE MIR 4 169 -39 6 1275 930 255 21 58 chr5 90475330 90475621 -62061638 + RLTR11A2 LTR ERVK 1 280 -247 6 1275 385 261 34 25 chr5 90475708 90475826 -62061433 + RLTR11A2 LTR ERVK 286 404 -49 6 1275 925 112 0 0 chr5 90476313 90476447 -62060812 - B1_Mus1 SINE Alu 0 148 15 6 1275 1082 128 0 11 chr5 90476476 90476658 -62060601 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6 1275 4445 14 0 0 chr5 90477369 90477862 -62059397 - MT2_Mm LTR ERVL 0 493 1 6 1275 480 296 102 17 chr5 90478051 90478456 -62058803 + L1_Rod LINE L1 2129 2559 -3584 6 1275 207 204 0 0 chr5 90480024 90480068 -62057191 + CT-rich Low_complexity Low_complexity 2 45 0 6 1275 2041 187 54 12 chr5 90480075 90480574 -62056685 + L1_Mur3 LINE L1 3321 3840 -2040 6 1275 842 177 200 0 chr5 90480575 90480750 -62056509 + B3 SINE B2 1 210 -6 6 1275 916 200 0 50 chr5 90480765 90480986 -62056273 + L1_Mur3 LINE L1 4146 4355 -1525 6 1275 1730 205 58 71 chr5 90480995 90481530 -62055729 - Lx7 LINE L1 0 7696 7169 6 1275 421 295 39 0 chr5 90482064 90482193 -62055066 - ID_B1 SINE B4 -7 217 84 6 1275 1751 82 84 93 chr5 90483918 90484239 -62053020 + ORR1A4 LTR MaLR 1 318 -11 6 1275 1005 161 55 36 chr5 90484961 90485180 -62052079 + URR1B DNA MER1_type 1 223 -2 6 1275 185 319 98 35 chr5 90485192 90485335 -62051924 - MIRb SINE MIR -51 217 66 6 1275 200 135 0 26 chr5 90485494 90485532 -62051727 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 6 1275 1208 217 14 90 chr5 90485648 90486003 -62051256 - RCHARR1 DNA MER1_type 0 974 647 6 1275 2031 101 6 100 chr5 90486003 90486305 -62050954 + ORR1A3 LTR MaLR 1 273 -53 6 1275 3296 61 0 0 chr5 90486305 90486715 -62050544 + L1_Mus1 LINE L1 6158 6567 0 6 1275 2031 101 6 100 chr5 90486715 90486763 -62050496 + ORR1A3 LTR MaLR 274 318 -8 6 1275 526 207 0 18 chr5 90486781 90486894 -62050365 - RCHARR1 DNA MER1_type -347 627 517 6 1275 349 308 125 10 chr5 90486930 90487235 -62050024 - Lx9 LINE L1 -18 7626 7287 6 1275 381 278 49 88 chr5 90487235 90487440 -62049819 - MT2B LTR ERVL -97 504 308 6 1275 3570 149 19 5 chr5 90487440 90488086 -62049173 + L1_Mus3 LINE L1 5227 5881 -2 6 1275 1695 100 0 0 chr5 90488179 90488429 -62048830 - L1_Mus4 LINE L1 -231 6405 6156 6 1275 519 45 0 0 chr5 90488425 90488492 -62048767 + L1_Mus3 LINE L1 5975 6041 -597 6 1275 240 286 0 67 chr5 90488495 90488555 -62048704 - ORR1D1 LTR MaLR -314 60 5 6 1275 237 229 113 16 chr5 90488724 90488786 -62048473 + RCHARR1 DNA MER1_type 1 68 -906 6 1275 422 152 120 28 chr5 90488780 90488888 -62048371 + RCHARR1 DNA MER1_type 386 503 -471 6 1275 645 264 13 52 chr5 90488898 90489130 -62048129 + Lx9 LINE L1 7012 7234 -410 6 1275 360 271 0 0 chr5 90489133 90489203 -62048056 + MT2A LTR ERVL 397 466 -67 6 1275 595 201 111 0 chr5 90489975 90490174 -62047085 + Lx9 LINE L1 7424 7644 0 6 1275 370 174 86 148 chr5 90490477 90490605 -62046654 + B1_Mur4 SINE Alu 16 135 -15 6 1275 567 0 0 0 chr5 90490605 90490668 -62046591 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 1275 431 238 64 138 chr5 90490695 90490978 -62046281 + L1MD LINE L1 3482 3743 -2403 6 1275 712 253 14 0 chr5 90490979 90491125 -62046134 + B1_Mur2 SINE Alu 1 148 -1 6 1275 2657 62 56 16 chr5 90491128 90491505 -62045754 - MTA_Mm LTR MaLR 0 396 5 6 1275 270 0 0 0 chr5 90491505 90491535 -62045724 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 6 1275 617 114 8 0 chr5 90491535 90491657 -62045602 + (TAGA)n Simple_repeat Simple_repeat 2 125 0 6 1275 242 264 0 19 chr5 90491693 90491747 -62045512 + ID4_ SINE ID 2 54 -29 6 1275 270 221 21 10 chr5 90491756 90491852 -62045407 + GA-rich Low_complexity Low_complexity 2 98 0 6 1275 344 265 134 58 chr5 90491909 90492185 -62045074 + L1MD LINE L1 3849 4145 -2001 6 1275 253 203 26 92 chr5 90492277 90492353 -62044906 - RMER15 LTR ERVL -89 486 416 7 1275 201 158 0 0 chr5 90492870 90492908 -62044351 + T-rich Low_complexity Low_complexity 1 38 0 7 1275 569 133 10 0 chr5 90494064 90494162 -62043097 + (GA)n Simple_repeat Simple_repeat 2 100 0 7 1275 1284 71 0 0 chr5 90494612 90494781 -62042478 + L1_Mus1 LINE L1 6398 6566 -1 7 1275 387 232 78 29 chr5 90495711 90495813 -62041446 + PB1D10 SINE Alu 4 110 -7 7 1275 1487 96 23 31 chr5 90496018 90496275 -62040984 - Lx2B LINE L1 0 7000 6746 7 1275 432 0 0 0 chr5 90496542 90496590 -62040669 + (TTTTG)n Simple_repeat Simple_repeat 1 48 0 7 1275 230 224 92 0 chr5 90497669 90497745 -62039514 + HAL1 LINE L1 623 705 -1802 7 1275 230 86 29 0 chr5 90498016 90498051 -62039208 + Lx9 LINE L1 7384 7419 -225 7 1275 549 309 62 35 chr5 90498210 90498468 -62038791 + HAL1 LINE L1 1042 1306 -1201 7 1275 1121 230 48 3 chr5 90498489 90498820 -62038439 - Lx9 LINE L1 -224 7420 7075 7 1275 410 281 137 63 chr5 90500906 90501096 -62036163 + B4A SINE B4 1 204 -88 1 1275 337 312 53 35 chr5 90501521 90501634 -62035625 + MLT1H LTR MaLR 136 250 -299 2 1275 331 269 63 84 chr5 90501730 90501872 -62035387 + MLT1H LTR MaLR 411 549 0 2 1275 1140 201 0 0 chr5 90502020 90502214 -62035045 + Lx9 LINE L1 7079 7272 -372 3 1275 1827 185 35 23 chr5 90502214 90502562 -62034697 - ORR1C1 LTR MaLR 0 378 27 4 1275 1236 178 166 13 chr5 90502564 90502877 -62034382 + Lx9 LINE L1 7283 7643 -1 3 1275 943 152 227 6 chr5 90502997 90503169 -62034090 - B3 SINE B2 -6 210 1 5 1275 508 246 27 0 chr5 90503627 90503737 -62033522 - PB1D9 SINE Alu -7 113 1 6 1275 1410 246 63 106 chr5 90504010 90504537 -62032722 + Lx8 LINE L1 6968 7471 -2 7 1275 264 364 158 19 chr5 90505715 90505981 -62031278 + L2c LINE L2 3084 3386 -1 8 1275 736 229 51 34 chr5 90507048 90507283 -62029976 + L1MA8 LINE L1 6047 6285 -6 9 1275 411 51 0 0 chr5 90507348 90507407 -62029852 - L1_Mus3 LINE L1 -7 6631 6573 1 1275 323 300 160 21 chr5 90507754 90507948 -62029311 + LTR79 LTR ERVL 257 477 -50 1 1275 430 294 13 59 chr5 90509209 90509361 -62027898 + ID_B1 SINE B4 69 213 -11 1 1275 215 61 30 0 chr5 90509367 90509400 -62027859 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 1 1275 25 0 0 0 chr5 90509495 90509520 -62027739 + AT_rich Low_complexity Low_complexity 1 25 0 1 1275 334 338 26 0 chr5 90509568 90509722 -62027537 - L1M3 LINE L1 -502 5810 5653 1 1275 327 243 14 0 chr5 90509772 90509842 -62027417 - RSINE1 SINE B4 -84 81 11 1 1275 6239 198 39 14 chr5 90509898 90511197 -62026062 - Lx2B LINE L1 -5 6995 5665 1 1275 360 284 17 63 chr5 90511200 90511412 -62025847 - L1M3 LINE L1 -558 5613 5417 1 1275 294 312 20 30 chr5 90511618 90511717 -62025542 + B1F SINE Alu 1 98 -51 1 1275 919 227 43 14 chr5 90512176 90512386 -62024873 + B3 SINE B2 1 216 0 1 1275 1236 114 45 0 chr5 90512413 90512589 -62024670 + B2_Mm2 SINE B2 5 188 -7 2 1275 1305 27 0 0 chr5 90513086 90513232 -62024027 + B1_Mus2 SINE Alu 2 147 0 2 1275 210 118 0 0 chr5 90513232 90513266 -62023993 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1275 230 232 29 0 chr5 90513346 90513415 -62023844 + L1MD LINE L1 4365 4435 -1711 2 1275 423 177 130 110 chr5 90513615 90513761 -62023498 + Lx4B LINE L1 6900 7048 -10 2 1275 238 307 29 169 chr5 90513782 90514060 -62023199 - ORR1E LTR MaLR -120 239 1 2 1275 1405 96 17 0 chr5 90514163 90514341 -62022918 - B2_Mm2 SINE B2 -13 182 2 2 1275 255 304 60 17 chr5 90515122 90515239 -62022020 - L2 LINE L2 -720 2699 2578 2 1275 363 254 63 32 chr5 90516196 90516322 -62020937 + MIR SINE MIR 45 174 -88 2 1275 276 100 0 0 chr5 90516360 90516400 -62020859 + (ATG)n Simple_repeat Simple_repeat 1 40 0 2 1275 878 255 14 9 chr5 90516424 90516638 -62020621 + B3 SINE B2 2 216 0 3 1275 1566 306 151 54 chr5 90517190 90518237 -62019022 + Charlie24 DNA MER1_type 948 2095 -355 3 1275 791 234 7 7 chr5 90518282 90518428 -62018831 + B1_Mur1 SINE Alu 3 148 -1 3 1275 576 0 0 0 chr5 90518883 90518947 -62018312 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1275 461 306 103 14 chr5 90518947 90519093 -62018166 - B3 SINE B2 -56 160 2 3 1275 320 0 0 24 chr5 90519097 90519138 -62018121 + (TGG)n Simple_repeat Simple_repeat 1 40 0 3 1275 180 135 0 0 chr5 90519138 90519175 -62018084 + (CTTG)n Simple_repeat Simple_repeat 2 38 0 3 1275 649 182 43 7 chr5 90519184 90519322 -62017937 - B1_Mus1 SINE Alu 0 148 6 3 1275 4673 106 35 12 chr5 90519338 90520000 -62017259 + Lx2B LINE L1 6319 6995 -5 3 1275 1109 282 89 14 chr5 90520754 90521103 -62016156 + MTEa LTR MaLR 5 379 0 3 1275 394 281 72 32 chr5 90521218 90521343 -62015916 - B3 SINE B2 -86 130 1 4 1275 207 325 121 38 chr5 90521488 90521645 -62015614 - MIRb SINE MIR -14 254 85 4 1275 1187 76 7 0 chr5 90521718 90521863 -62015396 - B1_Mus1 SINE Alu -1 147 2 4 1275 3351 79 9 24 chr5 90522571 90523025 -62014234 + L1_Mus3 LINE L1 6187 6633 -5 4 1275 755 208 22 11 chr5 90523044 90523221 -62014038 - B3 SINE B2 0 198 9 4 1275 1342 44 0 0 chr5 90523856 90524016 -62013243 + B2_Mm1t SINE B2 1 160 -33 4 1275 282 29 0 0 chr5 90524016 90524051 -62013208 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 4 1275 658 244 117 17 chr5 90524051 90524069 -62013190 + B3A SINE B2 178 196 -2 4 1275 38124 23 1 7 chr5 90524448 90529635 -62007624 + L1Md_T LINE L1 440 5586 -297 4 1275 9037 31 0 0 chr5 90529635 90530627 -62006632 + L1Md_T LINE L1 5587 6578 -4 4 1275 1639 39 0 0 chr5 90530627 90530805 -62006454 - B2_Mm1t SINE B2 -14 179 2 4 1275 1173 101 0 0 chr5 90530997 90531176 -62006083 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1275 620 241 22 15 chr5 90531177 90531312 -62005947 - RSINE1 SINE B4 -28 137 2 5 1275 1249 61 0 33 chr5 90531914 90532067 -62005192 - B1_Mus1 SINE Alu 0 148 1 5 1275 274 354 177 18 chr5 90532357 90532521 -62004738 + MLT1A1 LTR MaLR 181 370 -38 5 1275 1103 251 88 60 chr5 90533036 90533387 -62003872 - ORR1D2 LTR MaLR -9 361 1 5 1275 228 67 0 0 chr5 90534048 90534078 -62003181 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1275 31 0 0 0 chr5 90535478 90535509 -62001750 + AT_rich Low_complexity Low_complexity 1 31 0 5 1275 313 300 0 32 chr5 90535515 90535608 -62001651 + Lx8 LINE L1 7150 7239 -234 5 1275 279 262 252 37 chr5 90536162 90536297 -62000962 - L3b LINE CR1 -13 469 306 5 1275 1002 206 0 0 chr5 90536745 90536915 -62000344 - RLTR17 LTR ERVK -324 368 199 5 1275 224 130 22 0 chr5 90537017 90537063 -62000196 + CT-rich Low_complexity Low_complexity 1 47 0 6 1275 536 321 63 11 chr5 90537123 90537391 -61999868 + Charlie2a DNA MER1_type 1563 1844 -1017 6 1275 763 241 133 3 chr5 90537394 90537724 -61999535 - MTE2b LTR MaLR -6 373 1 6 1275 2047 152 72 14 chr5 90537805 90538164 -61999095 + RLTR14 LTR ERV1 3 382 0 6 1275 2120 291 76 10 chr5 90538177 90538898 -61998361 + Lx8 LINE L1 6700 7468 -5 6 1275 841 216 7 0 chr5 90539169 90539317 -61997942 + B1F2 SINE Alu 1 149 0 6 1275 502 257 9 9 chr5 90539416 90539522 -61997737 - RSINE1 SINE B4 -57 108 3 6 1275 414 0 0 0 chr5 90539555 90539601 -61997658 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1275 809 272 47 0 chr5 90539783 90539996 -61997263 + ID_B1 SINE B4 2 224 0 6 1275 742 99 66 0 chr5 90540007 90540159 -61997100 + GA-rich Low_complexity Low_complexity 1 162 0 6 1275 668 243 160 11 chr5 90540603 90540753 -61996506 + B3 SINE B2 5 180 -36 7 1275 405 0 0 0 chr5 90540753 90540798 -61996461 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1275 668 243 160 11 chr5 90540798 90540822 -61996437 + B3 SINE B2 181 204 -12 7 1275 416 261 159 0 chr5 90540948 90541105 -61996154 - L2a LINE L2 -7 3419 3238 7 1275 880 339 74 18 chr5 90541107 90541564 -61995695 - LTR79 LTR ERVL -13 514 32 7 1275 254 296 49 39 chr5 90542117 90542219 -61995040 + MTEb LTR MaLR 249 351 -28 7 1275 459 0 0 0 chr5 90542255 90542306 -61994953 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 7 1275 649 237 23 8 chr5 90542335 90542467 -61994792 - RSINE1 SINE B4 -20 145 12 7 1275 638 118 59 0 chr5 90543063 90543233 -61994026 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 1275 517 127 66 0 chr5 90543269 90543435 -61993824 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 7 1275 258 32 0 0 chr5 90544549 90544580 -61992679 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1275 1093 230 94 8 chr5 90544584 90544851 -61992408 - B4A SINE B4 -2 290 1 7 1275 375 262 189 0 chr5 90544851 90545042 -61992217 - L1M2 LINE L1 -2845 3298 3072 8 1275 5132 73 5 6 chr5 90545541 90546174 -61991085 - L1Md_F2 LINE L1 0 6582 5951 8 1275 279 73 18 35 chr5 90547250 90547307 -61989952 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 8 1275 501 304 56 39 chr5 90547405 90547450 -61989809 + ID_B1 SINE B4 44 224 0 8 1275 774 173 53 0 chr5 90547450 90547583 -61989676 + B1_Mur2 SINE Alu 10 149 0 8 1275 244 143 36 0 chr5 90547593 90547649 -61989610 + GA-rich Low_complexity Low_complexity 4 61 0 8 1275 2424 105 40 9 chr5 90548865 90549212 -61988047 - Lx2 LINE L1 -1 6996 6639 8 1275 585 231 225 0 chr5 90549249 90549422 -61987837 + ID_B1 SINE B4 2 213 -11 8 1275 192 77 0 0 chr5 90549580 90549606 -61987653 + (TTA)n Simple_repeat Simple_repeat 1 26 0 8 1275 807 237 86 53 chr5 90549979 90550149 -61987110 - B3 SINE B2 0 216 37 8 1275 1284 89 0 0 chr5 90550159 90550339 -61986920 + (TC)n Simple_repeat Simple_repeat 1 180 0 9 1275 1062 98 14 14 chr5 90550339 90550473 -61986786 - B1_Mus1 SINE Alu -12 136 2 9 1275 807 237 86 53 chr5 90550473 90550511 -61986748 - B3 SINE B2 -180 36 1 8 1275 24 0 0 0 chr5 90550940 90550964 -61986295 + AT_rich Low_complexity Low_complexity 1 24 0 9 1275 444 261 81 42 chr5 90551149 90551360 -61985899 - L1MA4 LINE L1 -370 5930 5690 9 1275 557 290 123 59 chr5 90551495 90551881 -61985378 - RMER20B LTR ERVK -31 596 205 9 1275 298 189 53 26 chr5 90552225 90552301 -61984958 - MIRb SINE MIR -66 202 125 9 1275 216 0 0 0 chr5 90552307 90552331 -61984928 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 9 1275 272 0 79 0 chr5 90552551 90552589 -61984670 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 9 1275 1556 52 5 40 chr5 90553029 90553228 -61984031 + B2_Mm1t SINE B2 2 193 0 9 1275 862 271 43 5 chr5 90553736 90553944 -61983315 + B3 SINE B2 1 216 0 9 1275 277 381 46 15 chr5 90554011 90554208 -61983051 + LTR82A LTR ERVL 571 773 -99 1 1275 1146 72 14 0 chr5 90554390 90554528 -61982731 + B1_Mus1 SINE Alu 1 140 -8 1 1275 671 125 0 7 chr5 90554530 90554667 -61982592 + (GAAA)n Simple_repeat Simple_repeat 3 138 0 1 1275 225 208 36 83 chr5 90554921 90554932 -61982327 + ID_B1 SINE B4 140 151 -73 1 1275 1157 53 0 0 chr5 90554932 90555063 -61982196 + B1_Mus2 SINE Alu 4 134 -13 1 1275 858 91 0 0 chr5 90555064 90555185 -61982074 + (GGAA)n Simple_repeat Simple_repeat 1 121 0 1 1275 225 208 36 83 chr5 90555185 90555255 -61982004 + ID_B1 SINE B4 152 219 -5 1 1275 446 95 0 0 chr5 90555194 90555257 -61982002 + B1_Mur4 SINE Alu 85 147 -3 1 1275 849 265 109 40 chr5 90556636 90557013 -61980246 + MLT2D LTR ERVL 8 410 -4 1 1275 341 272 80 104 chr5 90557264 90557514 -61979745 - ORR1E LTR MaLR -78 281 38 1 1275 22 0 0 0 chr5 90557559 90557581 -61979678 + AT_rich Low_complexity Low_complexity 1 22 0 1 1275 689 245 96 15 chr5 90557587 90557786 -61979473 - B3 SINE B2 0 216 2 1 1275 1781 67 25 0 chr5 90558104 90558344 -61978915 + L1_Mus3 LINE L1 6389 6634 -4 1 1275 288 0 0 0 chr5 90558366 90558398 -61978861 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1275 1118 101 0 0 chr5 90558454 90558602 -61978657 + B1_Mus1 SINE Alu 1 148 0 1 1275 1074 68 7 27 chr5 90559056 90559192 -61978067 + B1_Mus1 SINE Alu 1 135 -13 1 1275 216 0 0 0 chr5 90559192 90559216 -61978043 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1275 1074 68 7 27 chr5 90559216 90559229 -61978030 + B1_Mus1 SINE Alu 136 147 -1 1 1275 1183 265 17 78 chr5 90559598 90559942 -61977317 + MTE2b LTR MaLR 16 338 -41 1 1275 189 89 34 51 chr5 90559950 90560009 -61977250 + T-rich Low_complexity Low_complexity 1 58 0 1 1275 245 167 0 89 chr5 90560020 90560099 -61977160 + T-rich Low_complexity Low_complexity 5 76 0 1 1275 563 165 9 60 chr5 90560100 90560216 -61977043 - B1_Mur1 SINE Alu -2 147 38 1 1275 385 292 22 14 chr5 90560219 90560358 -61976901 - B3 SINE B2 -5 211 72 1 1275 2565 85 6 3 chr5 90560491 90560855 -61976404 - L1_Mus4 LINE L1 0 6636 6272 1 1275 204 40 0 0 chr5 90561057 90561082 -61976177 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1275 568 295 75 0 chr5 90562335 90562508 -61974751 - L1M2 LINE L1 -485 5806 5621 1 1275 8151 51 10 4 chr5 90562860 90564000 -61973259 - L1_Mus1 LINE L1 0 6654 5426 1 1275 374 238 143 0 chr5 90565773 90565878 -61971381 - PB1D7 SINE Alu 0 120 1 1 1275 1950 111 14 59 chr5 90565930 90566284 -61970975 + ORR1A1 LTR MaLR 1 338 -8 1 1275 298 275 12 0 chr5 90566291 90566371 -61970888 - PB1D10 SINE Alu -34 83 3 1 1275 380 309 100 25 chr5 90566428 90566731 -61970528 + MLT1A1 LTR MaLR 21 403 -5 1 1275 1900 77 75 164 chr5 90566875 90567234 -61970025 - ORR1A2 LTR MaLR 0 327 1 1 1275 446 0 19 0 chr5 90567992 90568046 -61969213 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1275 903 129 0 0 chr5 90568135 90568274 -61968985 + B1_Mus1 SINE Alu 10 148 0 1 1275 518 182 18 29 chr5 90568275 90568402 -61968857 + GA-rich Low_complexity Low_complexity 1 126 0 1 1275 1015 139 0 11 chr5 90568402 90568584 -61968675 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1275 518 182 18 29 chr5 90568584 90568626 -61968633 + polypurine Low_complexity Low_complexity 127 167 0 1 1275 1089 256 67 26 chr5 90568712 90569057 -61968202 + ORR1E LTR MaLR 1 359 0 1 1275 3238 56 2 12 chr5 90569188 90569588 -61967671 - MTA_Mm LTR MaLR 0 396 1 1 1275 377 308 137 17 chr5 90569988 90570163 -61967096 - Lx8 LINE L1 -233 7240 7045 1 1275 547 225 42 14 chr5 90570183 90570327 -61966932 - B1F2 SINE Alu 0 149 2 1 1275 278 340 169 15 chr5 90570337 90570597 -61966662 - LTR16C LTR ERVL -48 441 142 1 1276 234 339 24 24 chr5 90571048 90571172 -61966087 - MIR SINE MIR -67 195 72 1 1276 472 250 43 136 chr5 90571191 90571353 -61965906 + MTE2a LTR MaLR 1 147 -232 1 1276 825 156 49 7 chr5 90571383 90571525 -61965734 + B1_Mur2 SINE Alu 1 148 -1 1 1276 840 154 0 0 chr5 90571525 90571667 -61965592 + GA-rich Low_complexity Low_complexity 8 149 0 1 1276 602 247 42 16 chr5 90571700 90571889 -61965370 + MTE2a LTR MaLR 186 379 0 1 1276 231 61 0 0 chr5 90572897 90572930 -61964329 + (CAGAGA)n Simple_repeat Simple_repeat 6 38 0 1 1276 243 88 0 0 chr5 90573085 90573119 -61964140 + (ATGGTG)n Simple_repeat Simple_repeat 4 37 0 1 1276 337 178 10 118 chr5 90574055 90574070 -61963189 + MT2B LTR ERVL 154 157 -444 1 1276 631 67 0 0 chr5 90574070 90574159 -61963100 + B1_Mus1 SINE Alu 2 90 -58 1 1276 345 214 0 0 chr5 90574163 90574266 -61962993 + (CA)n Simple_repeat Simple_repeat 1 103 0 1 1276 1434 273 92 32 chr5 90574266 90575023 -61962236 + L1MA4 LINE L1 5497 6299 -1 1 1276 183 370 22 0 chr5 90575164 90575256 -61962003 - MIRb SINE MIR -8 260 167 1 1276 387 169 0 0 chr5 90575256 90575327 -61961932 + (CACG)n Simple_repeat Simple_repeat 1 71 0 1 1276 8653 28 0 0 chr5 90575368 90576400 -61960859 - L1Md_T LINE L1 -1 6581 5550 1 1276 1090 59 0 0 chr5 90576720 90576855 -61960404 + B1_Mus1 SINE Alu 2 136 -12 1 1276 207 0 0 0 chr5 90576856 90576879 -61960380 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1276 790 182 7 0 chr5 90577492 90577629 -61959630 + B1_Mur1 SINE Alu 5 142 -7 1 1276 465 19 0 0 chr5 90577631 90577685 -61959574 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 1 1276 1283 147 91 12 chr5 90577768 90577935 -61959324 + RMER1C Other Other 1060 1248 -94 1 1276 3378 35 5 0 chr5 90577935 90578329 -61958930 - MTA_Mm LTR MaLR 0 396 1 1 1276 1283 147 91 12 chr5 90578329 90578402 -61958857 + RMER1C Other Other 1249 1319 -23 1 1276 213 39 0 0 chr5 90578473 90578499 -61958760 + (C)n Simple_repeat Simple_repeat 1 26 0 1 1276 678 217 0 48 chr5 90578734 90578879 -61958380 - B1_Mur1 SINE Alu -5 144 7 1 1276 267 318 12 12 chr5 90578804 90578890 -61958369 - B4A SINE B4 -126 166 81 1 1276 695 181 80 0 chr5 90579004 90579142 -61958117 + B1_Mur4 SINE Alu 2 150 0 1 1276 291 140 0 0 chr5 90579841 90579891 -61957368 + (TCC)n Simple_repeat Simple_repeat 3 52 0 1 1276 468 0 0 0 chr5 90579895 90579947 -61957312 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1276 307 221 10 21 chr5 90579990 90580087 -61957172 + CT-rich Low_complexity Low_complexity 3 98 0 1 1276 410 274 46 23 chr5 90580097 90580228 -61957031 - B1F SINE Alu -15 134 1 1 1276 302 300 56 28 chr5 90580292 90580436 -61956823 - B1F2 SINE Alu 0 149 2 1 1276 282 234 26 86 chr5 90580647 90580764 -61956495 + RMER15-int LTR ERVL 4708 4817 -182 1 1276 664 322 129 35 chr5 90580783 90581234 -61956025 + Lx8 LINE L1 6921 7413 -60 1 1276 492 191 79 0 chr5 90581693 90581819 -61955440 - B1_Mur1 SINE Alu -3 146 11 1 1276 502 281 119 77 chr5 90583311 90583623 -61953636 + MLT1C LTR MaLR 1 325 -142 1 1276 531 0 0 0 chr5 90583846 90583905 -61953354 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1276 336 301 0 0 chr5 90583909 90583982 -61953277 - RSINE1 SINE B4 -14 151 79 1 1276 400 165 22 0 chr5 90584138 90584229 -61953030 + (TATG)n Simple_repeat Simple_repeat 4 96 0 1 1276 396 0 0 0 chr5 90584490 90584534 -61952725 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1276 366 71 37 44 chr5 90585239 90585333 -61951926 - ORR1A3 LTR MaLR -269 125 2 1 1276 274 296 83 0 chr5 90585660 90585768 -61951491 - B4 SINE B4 -174 118 2 1 1276 685 201 134 19 chr5 90585961 90586138 -61951121 - B3 SINE B2 -8 208 32 1 1276 26 50 0 0 chr5 90586175 90586215 -61951044 + AT_rich Low_complexity Low_complexity 1 40 0 1 1276 357 206 0 0 chr5 90586541 90586609 -61950650 + PB1D7 SINE Alu 1 68 -52 1 1276 1245 126 11 5 chr5 90586609 90586800 -61950459 + B2_Mm2 SINE B2 4 195 0 1 1276 289 54 0 0 chr5 90586803 90586840 -61950419 - B3 SINE B2 -171 45 9 1 1276 672 292 104 4 chr5 90587391 90587642 -61949617 + B4A SINE B4 11 286 -6 1 1276 212 246 15 0 chr5 90587674 90587739 -61949520 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1276 941 226 208 26 chr5 90588409 90588579 -61948680 - MTD LTR MaLR 0 419 205 1 1276 2030 111 38 118 chr5 90588579 90588978 -61948281 + ORR1B2 LTR MaLR 1 367 0 1 1276 941 226 208 26 chr5 90588978 90589120 -61948139 - MTD LTR MaLR -215 204 50 1 1276 450 0 0 0 chr5 90589120 90589170 -61948089 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1276 505 236 148 142 chr5 90589417 90589783 -61947476 + RLTR9A LTR ERVK 1 368 0 1 1276 2490 117 45 2 chr5 90590266 90590662 -61946597 + MTC LTR MaLR 1 413 -8 1 1276 1447 68 16 5 chr5 90591200 90591393 -61945866 + B2_Mm2 SINE B2 1 195 0 1 1276 243 146 0 0 chr5 90591393 90591434 -61945825 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1276 737 329 21 8 chr5 90591538 90591774 -61945485 - B4A SINE B4 -4 288 50 1 1276 339 267 56 0 chr5 90591922 90592012 -61945247 + PB1D7 SINE Alu 1 95 -25 1 1276 1063 50 43 0 chr5 90593713 90593852 -61943407 + B1_Mus1 SINE Alu 4 148 0 1 1276 291 85 0 0 chr5 90593917 90593964 -61943295 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1276 548 204 2 43 chr5 90594128 90594254 -61943005 + Lx8 LINE L1 6387 6491 -982 1 1276 235 239 45 11 chr5 90594391 90594480 -61942779 + GA-rich Low_complexity Low_complexity 1 92 0 1 1276 500 194 19 10 chr5 90594638 90594742 -61942517 + PB1D10 SINE Alu 6 110 -7 1 1276 624 291 10 25 chr5 90594751 90594952 -61942307 + B3A SINE B2 1 198 0 1 1276 1158 68 0 0 chr5 90594974 90595120 -61942139 + B1_Mus2 SINE Alu 2 147 0 1 1276 312 120 0 0 chr5 90595122 90595172 -61942087 + (A)n Simple_repeat Simple_repeat 1 50 0 2 1276 701 132 0 8 chr5 90595179 90595301 -61941958 + (GGAA)n Simple_repeat Simple_repeat 4 124 0 2 1276 286 304 0 0 chr5 90595313 90595392 -61941867 + ID4_ SINE ID 5 83 0 2 1276 180 77 0 0 chr5 90596255 90596281 -61940978 + (CACCC)n Simple_repeat Simple_repeat 1 26 0 2 1276 1328 77 39 0 chr5 90596743 90596925 -61940334 + B2_Mm1a SINE B2 3 191 -2 2 1276 1301 230 96 6 chr5 90597195 90597528 -61939731 + ORR1D2 LTR MaLR 8 370 0 2 1276 242 216 0 19 chr5 90597575 90597627 -61939632 - B1F SINE Alu -2 147 97 2 1276 495 48 0 0 chr5 90597648 90597710 -61939549 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1276 463 275 0 183 chr5 90597713 90597813 -61939446 - RSINE1 SINE B4 -16 149 71 2 1276 1175 69 0 14 chr5 90597813 90597960 -61939299 + B1_Mus1 SINE Alu 2 146 -2 2 1276 463 275 0 183 chr5 90597960 90598028 -61939231 - RSINE1 SINE B4 -95 70 12 2 1276 286 235 12 24 chr5 90598029 90598112 -61939147 - PB1D10 SINE Alu -34 83 2 2 1276 303 122 0 0 chr5 90598458 90598507 -61938752 + (GGA)n Simple_repeat Simple_repeat 3 51 0 2 1276 38672 14 1 7 chr5 90598538 90603781 -61933478 + L1Md_A LINE L1 381 5586 -297 2 1276 8870 17 1 0 chr5 90603782 90604776 -61932483 + L1Md_A LINE L1 5588 6582 0 2 1276 320 236 16 39 chr5 90604830 90604958 -61932301 + Lx7 LINE L1 7567 7691 -5 2 1276 278 159 95 0 chr5 90605530 90605593 -61931666 - PB1D10 SINE Alu -1 116 48 2 1276 240 238 48 0 chr5 90605550 90605613 -61931646 - 4.5SRNA scRNA scRNA -6 88 23 2 1276 908 265 86 65 chr5 90605898 90606164 -61931095 - MTEa LTR MaLR 0 379 111 2 1276 243 0 0 0 chr5 90606164 90606191 -61931068 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1276 908 265 86 65 chr5 90606191 90606295 -61930964 - MTEa LTR MaLR -269 110 1 2 1276 837 252 80 0 chr5 90606534 90606760 -61930499 - MT2A LTR ERVL -11 522 279 2 1276 533 291 0 0 chr5 90606762 90606903 -61930356 - MT2A LTR ERVL -380 153 13 2 1276 1556 72 0 5 chr5 90607740 90607936 -61929323 + B2_Mm2 SINE B2 1 195 0 2 1276 549 0 0 0 chr5 90608551 90608612 -61928647 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1276 696 276 40 27 chr5 90608711 90608972 -61928287 + L1MA4 LINE L1 5673 5938 -362 2 1276 432 0 0 0 chr5 90608979 90609027 -61928232 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1276 512 243 4 19 chr5 90609265 90609420 -61927839 + L1MA4A LINE L1 5772 5932 -371 2 1276 1180 75 0 0 chr5 90609452 90609599 -61927660 + B1_Mus2 SINE Alu 1 147 0 2 1276 191 36 0 35 chr5 90609601 90609630 -61927629 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 2 1276 1081 221 90 48 chr5 90609764 90610121 -61927138 - RMER13A LTR ERVK -394 466 95 2 1276 368 114 39 39 chr5 90610414 90610542 -61926717 + A-rich Low_complexity Low_complexity 3 130 0 2 1276 366 296 75 34 chr5 90610787 90610934 -61926325 - RSINE1 SINE B4 -8 157 5 2 1276 4465 62 40 7 chr5 90611130 90611727 -61925532 + L1_Mus3 LINE L1 6022 6638 0 2 1276 423 278 51 19 chr5 90612450 90612608 -61924651 + RSINE1 SINE B4 2 164 -1 2 1276 245 29 29 0 chr5 90612628 90612662 -61924597 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1276 253 211 84 0 chr5 90612982 90613069 -61924190 + L1MA7 LINE L1 6197 6291 0 2 1276 380 119 310 60 chr5 90613093 90613209 -61924050 - B2_Mm2 SINE B2 -4 191 47 2 1276 1298 91 11 0 chr5 90613256 90613432 -61923827 - B2_Mm1t SINE B2 -14 179 2 2 1276 328 133 0 48 chr5 90613446 90613509 -61923750 + Lx7 LINE L1 7637 7696 0 2 1276 33 25 0 0 chr5 90613546 90613586 -61923673 + AT_rich Low_complexity Low_complexity 1 40 0 2 1276 757 240 17 34 chr5 90613621 90613798 -61923461 - B3 SINE B2 -36 180 7 2 1276 759 213 46 73 chr5 90614353 90614506 -61922753 + B3 SINE B2 5 147 -69 2 1276 1107 122 0 0 chr5 90614506 90614678 -61922581 + (TTC)n Simple_repeat Simple_repeat 1 172 0 2 1276 759 213 46 73 chr5 90614678 90614742 -61922517 + B3 SINE B2 148 216 0 2 1276 399 283 88 9 chr5 90615087 90615201 -61922058 + ID_B1 SINE B4 91 213 -11 2 1276 593 59 24 0 chr5 90615205 90615290 -61921969 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 2 1276 961 93 193 0 chr5 90615352 90615502 -61921757 + B2_Mm1t SINE B2 1 179 -14 2 1276 275 146 0 35 chr5 90615568 90615625 -61921634 + B2_Mm2 SINE B2 47 101 -94 2 1276 498 156 0 0 chr5 90615653 90615685 -61921574 + A-rich Low_complexity Low_complexity 1 32 0 2 1276 1189 68 0 0 chr5 90615685 90615831 -61921428 + B1_Mus2 SINE Alu 2 147 0 2 1276 498 156 0 0 chr5 90615831 90615888 -61921371 + A-rich Low_complexity Low_complexity 33 89 0 2 1276 1234 126 15 26 chr5 90616377 90616572 -61920687 + B2_Mm2 SINE B2 1 193 -2 2 1276 524 257 89 22 chr5 90616825 90617004 -61920255 + Lx8 LINE L1 7241 7431 -42 2 1276 23 0 0 0 chr5 90617047 90617070 -61920189 + AT_rich Low_complexity Low_complexity 1 23 0 2 1276 254 100 0 0 chr5 90617077 90617117 -61920142 + B3 SINE B2 2 41 -175 2 1276 1285 20 0 0 chr5 90617117 90617264 -61919995 + B1_Mus1 SINE Alu 2 148 0 2 1276 405 0 0 0 chr5 90617266 90617311 -61919948 + (A)n Simple_repeat Simple_repeat 1 45 0 2 1276 1063 62 0 7 chr5 90617311 90617456 -61919803 + B2_Mm2 SINE B2 26 169 -26 2 1276 23 54 0 0 chr5 90617457 90617494 -61919765 + AT_rich Low_complexity Low_complexity 1 37 0 2 1276 521 114 114 0 chr5 90617758 90617863 -61919396 + ORR1B1 LTR MaLR 4 120 -274 2 1276 3578 38 55 0 chr5 90617849 90618319 -61918940 - RLTR1C LTR ERV1 -7 496 1 2 1276 1504 122 76 12 chr5 90618319 90618568 -61918691 + ORR1B1 LTR MaLR 117 381 -13 2 1276 271 283 32 32 chr5 90618630 90618725 -61918534 + B4A SINE B4 1 95 -197 2 1276 213 121 0 0 chr5 90618775 90618808 -61918451 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1276 441 245 10 0 chr5 90618899 90619001 -61918258 + ID_B1 SINE B4 114 216 -8 2 1276 1269 34 0 0 chr5 90619036 90619182 -61918077 + B1_Mm SINE Alu 2 147 0 2 1276 180 0 0 0 chr5 90619182 90619202 -61918057 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1276 290 233 33 55 chr5 90619767 90619783 -61917476 + MT2B LTR ERVL 152 240 -361 2 1276 458 275 66 86 chr5 90619783 90619858 -61917401 + B1_Mur1 SINE Alu 2 85 -64 2 1276 3105 63 10 2 chr5 90619858 90620255 -61917004 - MTB LTR MaLR 0 400 1 2 1276 458 275 66 86 chr5 90620255 90620330 -61916929 + B1_Mur1 SINE Alu 86 149 0 2 1276 220 200 0 0 chr5 90620345 90620385 -61916874 + ID SINE ID 5 44 -180 2 1276 361 372 59 0 chr5 90620388 90620592 -61916667 + Lx8 LINE L1 7111 7326 -147 2 1276 1737 325 66 33 chr5 90620813 90621978 -61915281 + Lx8 LINE L1 6225 7463 -10 2 1276 737 229 49 30 chr5 90621996 90622199 -61915060 + B3 SINE B2 4 210 -6 2 1276 845 149 143 5 chr5 90622985 90623174 -61914085 + MTD LTR MaLR 1 215 -204 2 1276 858 48 0 0 chr5 90623175 90623280 -61913979 + L1_Mus1 LINE L1 6382 6486 -81 2 1276 369 167 60 0 chr5 90623280 90623364 -61913895 + B1_Mur4 SINE Alu 41 129 -21 2 1276 520 226 52 9 chr5 90623390 90623506 -61913753 + MTD LTR MaLR 295 415 -6 2 1276 424 213 111 0 chr5 90623771 90623879 -61913380 - PB1D9 SINE Alu 0 120 1 2 1276 228 100 0 0 chr5 90623921 90623961 -61913298 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1276 2074 186 124 31 chr5 90624161 90624677 -61912582 - RMER2 LTR ERV1 0 567 4 2 1276 1160 68 0 0 chr5 90625134 90625281 -61911978 + B1_Mus2 SINE Alu 1 147 0 2 1276 293 43 0 42 chr5 90625281 90625329 -61911930 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 2 1276 1492 283 25 20 chr5 90625342 90625782 -61911477 - MuRRS4-int LTR ERV1 -1067 3996 3555 2 1276 411 90 300 75 chr5 90625846 90625966 -61911293 - B2_Mm2 SINE B2 -2 193 47 2 1276 1024 94 126 0 chr5 90625997 90626156 -61911103 - B2_Mm1t SINE B2 -13 180 2 2 1276 432 377 5 5 chr5 90626459 90626675 -61910584 - RLTR6-int LTR ERV1 -3221 4557 4342 2 1276 271 268 201 14 chr5 90626713 90626919 -61910340 + L1_Rod LINE L1 5124 5401 -479 2 1276 1140 82 0 0 chr5 90626927 90627074 -61910185 + B1_Mus2 SINE Alu 1 147 0 2 1276 216 0 0 0 chr5 90627085 90627109 -61910150 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 2 1276 216 0 0 0 chr5 90627113 90627137 -61910122 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2 1276 1299 29 103 0 chr5 90627179 90627353 -61909906 - MTB LTR MaLR 0 400 209 2 1276 981 76 7 7 chr5 90627336 90627481 -61909778 + MTA_Mm LTR MaLR 256 400 0 2 1276 8438 63 19 3 chr5 90627481 90628561 -61908698 + MTA_Mm-int LTR MaLR 1 1098 0 2 1276 2830 59 70 11 chr5 90628561 90628935 -61908324 + MTA_Mm LTR MaLR 1 396 0 2 1276 629 317 11 56 chr5 90628986 90629080 -61908179 + L1_Rod LINE L1 5541 5633 -658 2 1276 1677 114 17 110 chr5 90629080 90629435 -61907824 + RLTRETN_Mm LTR ERVK 1 322 0 2 1276 629 317 11 56 chr5 90629435 90629624 -61907635 + L1_Rod LINE L1 5634 5811 -480 2 1276 986 45 0 0 chr5 90629854 90629986 -61907273 - B1_Mm SINE Alu 0 147 16 2 1276 457 229 18 44 chr5 90629998 90630112 -61907147 - PB1D10 SINE Alu -4 113 3 2 1276 516 234 126 39 chr5 90630279 90630461 -61906798 - Lx9 LINE L1 -490 7154 6957 2 1276 450 0 0 0 chr5 90630556 90630606 -61906653 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1276 646 269 45 0 chr5 90630612 90630768 -61906491 - B3A SINE B2 -34 164 2 2 1276 673 172 29 6 chr5 90631071 90631246 -61906013 + CT-rich Low_complexity Low_complexity 2 180 0 2 1276 387 198 112 34 chr5 90631334 90631423 -61905836 - B3 SINE B2 -119 97 2 2 1276 1409 78 17 0 chr5 90632608 90632788 -61904471 + B2_Mm2 SINE B2 2 184 -11 2 1276 709 125 62 0 chr5 90632873 90632985 -61904274 - PB1D9 SINE Alu 0 120 2 2 1276 213 257 27 54 chr5 90632985 90633059 -61904200 + PB1D10 SINE Alu 14 85 -32 2 1276 679 186 0 43 chr5 90633380 90633518 -61903741 - B1_Mur2 SINE Alu -2 147 16 2 1276 487 184 13 145 chr5 90633524 90633540 -61903719 - B1_Mur2 SINE Alu 0 149 138 2 1276 624 81 0 0 chr5 90633540 90633627 -61903632 + (TC)n Simple_repeat Simple_repeat 2 88 0 3 1276 487 184 13 145 chr5 90633627 90633769 -61903490 - B1_Mur2 SINE Alu -12 137 12 2 1276 427 238 62 31 chr5 90633816 90633946 -61903313 + B1F1 SINE Alu 12 145 -4 3 1276 728 158 22 29 chr5 90634200 90634337 -61902922 - B1_Mur3 SINE Alu -13 136 1 3 1276 657 131 0 0 chr5 90634535 90634642 -61902617 + (CA)n Simple_repeat Simple_repeat 1 107 0 3 1276 376 238 0 54 chr5 90634802 90634913 -61902346 + RSINE1 SINE B4 1 105 -60 3 1276 198 0 0 0 chr5 90634929 90634951 -61902308 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1276 432 0 0 0 chr5 90634951 90634999 -61902260 + (TAA)n Simple_repeat Simple_repeat 1 48 0 3 1276 503 186 5 35 chr5 90635099 90635209 -61902050 + B1F2 SINE Alu 42 146 -1 3 1276 821 142 0 20 chr5 90635240 90635263 -61901996 + polypurine Low_complexity Low_complexity 4 25 0 3 1276 934 111 37 0 chr5 90635263 90635398 -61901861 + B1_Mus2 SINE Alu 2 141 -6 3 1276 821 142 0 20 chr5 90635398 90635525 -61901734 + polypurine Low_complexity Low_complexity 26 151 0 3 1276 396 0 0 0 chr5 90635731 90635775 -61901484 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 3 1276 237 146 0 0 chr5 90635804 90635852 -61901407 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1276 336 235 200 8 chr5 90635874 90635994 -61901265 - RSINE1 SINE B4 -19 146 4 3 1276 1247 41 0 0 chr5 90636689 90636836 -61900423 + B1_Mm SINE Alu 1 147 0 3 1276 309 151 0 0 chr5 90636836 90636889 -61900370 + A-rich Low_complexity Low_complexity 1 53 0 3 1276 827 32 0 0 chr5 90636939 90637033 -61900226 + L1Md_T LINE L1 5493 5586 -297 3 1276 8196 54 0 0 chr5 90637033 90638066 -61899193 + L1Md_T LINE L1 5587 6582 0 3 1276 873 56 0 39 chr5 90638093 90638223 -61899036 - B1_Mus2 SINE Alu -21 126 2 3 1276 464 165 41 124 chr5 90638223 90638252 -61899007 - MT2B LTR ERVL -453 148 132 3 1276 377 274 165 38 chr5 90638802 90638935 -61898324 + B3A SINE B2 1 150 -48 3 1276 1298 98 16 21 chr5 90639258 90639446 -61897813 - B2_Mm2 SINE B2 -7 188 2 3 1276 303 28 0 0 chr5 90639448 90639484 -61897775 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 3 1276 1115 43 56 21 chr5 90639784 90639927 -61897332 - B1_Mus1 SINE Alu 0 148 1 3 1276 267 49 0 24 chr5 90640083 90640125 -61897134 - PB1D9 SINE Alu -2 118 78 3 1276 344 272 0 0 chr5 90640210 90640291 -61896968 + ID_B1 SINE B4 124 204 -20 3 1276 524 123 0 0 chr5 90640365 90640446 -61896813 - B1_Mur4 SINE Alu 0 150 70 3 1276 320 272 19 28 chr5 90640446 90640471 -61896788 - ID_B1 SINE B4 0 224 120 3 1276 388 0 39 0 chr5 90640485 90640537 -61896722 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1276 1131 69 0 0 chr5 90640537 90640673 -61896586 - B1_Mus2 SINE Alu -9 138 3 3 1276 422 220 102 0 chr5 90640723 90640841 -61896418 + B3A SINE B2 31 160 -38 3 1276 679 195 102 18 chr5 90641389 90641556 -61895703 + RLTR33 LTR ERVK 1 181 -497 3 1276 1714 136 35 0 chr5 90641691 90642001 -61895258 + ORR1A4 LTR MaLR 1 321 -8 3 1276 270 203 17 17 chr5 90642010 90642070 -61895189 + Tigger5 DNA MER2_type 2347 2406 0 3 1276 388 136 198 0 chr5 90642116 90642197 -61895062 - RLTR33 LTR ERVK -34 644 548 3 1276 307 211 84 0 chr5 90642203 90642274 -61894985 + MER82 DNA MER2_type 75 151 -502 3 1276 589 234 0 80 chr5 90642415 90642591 -61894668 + RSINE1 SINE B4 4 165 0 3 1276 1368 86 11 5 chr5 90642817 90643005 -61894254 - B2_Mm1t SINE B2 -3 190 2 3 1276 1160 112 78 0 chr5 90643315 90643494 -61893765 + B2_Mm1a SINE B2 1 193 0 3 1276 323 78 0 19 chr5 90643680 90643732 -61893527 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 3 1276 326 297 18 0 chr5 90644942 90645053 -61892206 + RSINE1 SINE B4 32 144 -21 3 1276 180 77 0 0 chr5 90645882 90645908 -61891351 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1276 1200 48 0 0 chr5 90645908 90646054 -61891205 - B1_Mus2 SINE Alu 0 147 2 3 1276 340 202 226 19 chr5 90646817 90646923 -61890336 - B1F2 SINE Alu -14 135 8 3 1276 384 207 37 0 chr5 90647703 90647785 -61889474 - B3A SINE B2 -113 85 1 3 1276 232 214 0 35 chr5 90647830 90647888 -61889371 + RLTR25A LTR ERVK 6 61 -1042 3 1276 22 0 0 0 chr5 90648751 90648773 -61888486 + AT_rich Low_complexity Low_complexity 1 22 0 3 1276 271 218 0 93 chr5 90648788 90648874 -61888385 + ID_B1 SINE B4 147 224 0 3 1276 589 252 28 0 chr5 90649239 90649382 -61887877 - B1_Mus2 SINE Alu 0 147 1 3 1276 298 239 110 42 chr5 90649397 90649515 -61887744 - ID_B1 SINE B4 -6 218 93 3 1276 203 0 37 0 chr5 90649588 90649615 -61887644 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1276 369 281 34 27 chr5 90650094 90650244 -61887015 - B1_Mur1 SINE Alu 0 150 1 3 1276 863 263 0 16 chr5 90650292 90650485 -61886774 - B3 SINE B2 0 216 27 3 1276 325 207 0 139 chr5 90650486 90650587 -61886672 + MT2B LTR ERVL 169 255 -346 3 1276 825 119 0 16 chr5 90650505 90650633 -61886626 + B1_Mm SINE Alu 19 144 -3 3 1276 454 258 24 16 chr5 90650866 90650992 -61886267 + ID_B1 SINE B4 84 210 -14 3 1276 235 313 0 43 chr5 90651000 90651070 -61886189 + B4A SINE B4 78 144 -148 3 1276 230 300 12 59 chr5 90651009 90651094 -61886165 + AluG_3 SINE Alu 137 217 -94 3 1276 549 254 251 9 chr5 90651417 90651632 -61885627 + MTD LTR MaLR 6 272 -147 3 1276 1073 36 0 0 chr5 90653484 90653624 -61883635 + B1_Mus1 SINE Alu 9 148 0 3 1276 227 213 0 0 chr5 90653624 90653671 -61883588 + A-rich Low_complexity Low_complexity 1 47 0 3 1276 23 0 0 0 chr5 90654825 90654848 -61882411 + AT_rich Low_complexity Low_complexity 1 23 0 3 1276 268 283 148 59 chr5 90654980 90655149 -61882110 + B3A SINE B2 1 184 -14 3 1276 294 309 40 20 chr5 90655260 90655359 -61881900 + B1F2 SINE Alu 5 105 -44 3 1276 248 239 45 0 chr5 90655443 90655510 -61881749 + PB1D7 SINE Alu 27 96 -24 3 1276 230 340 43 86 chr5 90655494 90655610 -61881649 - ID_B1 SINE B4 -93 131 21 3 1276 457 153 59 0 chr5 90655835 90655920 -61881339 - B1F2 SINE Alu -10 139 50 3 1276 590 199 15 8 chr5 90655957 90656089 -61881170 - B1_Mus2 SINE Alu -6 141 9 3 1276 22 35 0 0 chr5 90656198 90656227 -61881032 + AT_rich Low_complexity Low_complexity 1 29 0 3 1276 255 250 83 0 chr5 90658531 90658603 -61878656 + ID_B1 SINE B4 141 218 -6 3 1276 558 291 75 0 chr5 90658626 90658825 -61878434 + B3 SINE B2 1 214 -2 3 1276 247 308 15 0 chr5 90658976 90659041 -61878218 - tRNA-Ala-GCY_ tRNA tRNA -9 66 1 3 1276 283 307 33 2 chr5 90659211 90659334 -61877925 + B1F SINE Alu 16 141 -8 3 1276 688 212 80 0 chr5 90659452 90659589 -61877670 - B1_Mur1 SINE Alu -1 148 1 3 1276 233 307 79 0 chr5 90660120 90660221 -61877038 + B1_Mus2 SINE Alu 39 147 0 3 1276 186 43 0 0 chr5 90660231 90660254 -61877005 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1276 625 236 35 0 chr5 90660380 90660524 -61876735 + B1_Mur1 SINE Alu 1 149 0 3 1276 1579 37 0 35 chr5 90660554 90660733 -61876526 + B2_Mm1t SINE B2 2 180 -13 3 1276 303 28 0 0 chr5 90660733 90660769 -61876490 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 3 1276 1579 37 0 35 chr5 90660769 90660786 -61876473 + B2_Mm1t SINE B2 181 191 -2 3 1276 827 276 5 20 chr5 90660829 90661029 -61876230 + B3A SINE B2 2 198 0 3 1276 232 260 120 45 chr5 90662248 90662381 -61874878 + B1F1 SINE Alu 5 147 -2 3 1276 713 212 20 7 chr5 90662524 90662676 -61874583 + B3 SINE B2 58 211 -5 3 1276 1149 56 0 20 chr5 90662683 90662829 -61874430 + B1_Mus2 SINE Alu 5 147 0 3 1276 301 282 0 154 chr5 90663442 90663503 -61873756 + PB1D10 SINE Alu 1 48 -69 3 1276 803 153 51 0 chr5 90663503 90663640 -61873619 + B1_Mur2 SINE Alu 1 144 -5 3 1276 301 282 0 154 chr5 90663640 90663708 -61873551 + PB1D10 SINE Alu 49 110 -7 3 1276 212 339 0 61 chr5 90663747 90663813 -61873446 + ID4_ SINE ID 11 72 -11 3 1276 1192 48 0 13 chr5 90663989 90664138 -61873121 - B1_Mus2 SINE Alu 0 147 1 3 1276 280 278 156 56 chr5 90664273 90664433 -61872826 - B4A SINE B4 -10 282 107 3 1276 539 252 38 38 chr5 90664622 90664779 -61872480 + ORR1D1 LTR MaLR 1 157 -217 3 1276 523 234 45 30 chr5 90664776 90664908 -61872351 + B1_Mur4 SINE Alu 17 150 0 3 1276 658 210 84 38 chr5 90664933 90665140 -61872119 + ORR1D1 LTR MaLR 143 359 -15 3 1276 1787 247 108 52 chr5 90665140 90665906 -61871353 + ORR1D1-int LTR MaLR 1 963 -546 3 1276 766 174 90 53 chr5 90665874 90666166 -61871093 + ORR1D1-int LTR MaLR 1171 1365 -5 3 1276 1235 221 71 40 chr5 90666172 90666525 -61870734 + ORR1D1 LTR MaLR 5 368 -6 3 1276 23 33 0 0 chr5 90666932 90666962 -61870297 + AT_rich Low_complexity Low_complexity 1 30 0 3 1276 398 202 308 26 chr5 90666962 90667079 -61870180 + B1_Mur4 SINE Alu 1 150 0 3 1276 269 231 25 37 chr5 90667086 90667167 -61870092 + B1_Mus2 SINE Alu 47 126 -21 3 1276 227 369 15 83 chr5 90667218 90667351 -61869908 - PB1 SINE Alu -3 124 1 3 1276 825 284 21 0 chr5 90667502 90667692 -61869567 - B3 SINE B2 -22 194 1 3 1276 243 208 38 0 chr5 90668248 90668301 -61868958 + GA-rich Low_complexity Low_complexity 2 56 0 3 1276 546 275 38 8 chr5 90668308 90668440 -61868819 + ID_B1 SINE B4 82 217 -7 3 1276 692 246 71 27 chr5 90668670 90668854 -61868405 + B3 SINE B2 1 192 -24 3 1276 536 226 0 9 chr5 90668901 90669008 -61868251 + B1_Mur2 SINE Alu 44 149 0 3 1276 1225 21 0 0 chr5 90669019 90669159 -61868100 + B1_Mm SINE Alu 2 141 -6 3 1276 395 0 0 39 chr5 90669161 90669213 -61868046 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 3 1276 251 190 238 12 chr5 90669421 90669501 -61867758 + PB1D10 SINE Alu 6 103 -14 4 1276 389 264 45 37 chr5 90669584 90669718 -61867541 + B1F2 SINE Alu 13 147 -2 4 1276 556 79 27 82 chr5 90670015 90670125 -61867134 + L1_Mus1 LINE L1 6464 6567 0 4 1276 207 0 0 0 chr5 90670129 90670152 -61867107 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4 1276 216 0 0 0 chr5 90670186 90670210 -61867049 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 4 1276 993 90 20 14 chr5 90670225 90670371 -61866888 + B1_Mus1 SINE Alu 2 148 0 4 1276 225 146 18 18 chr5 90670371 90670427 -61866832 + (CAA)n Simple_repeat Simple_repeat 3 58 0 4 1276 296 244 25 13 chr5 90670577 90670656 -61866603 + MER3 DNA MER1_type 1 80 -129 4 1276 440 186 123 38 chr5 90670687 90670793 -61866466 - PB1D9 SINE Alu -3 117 3 4 1276 307 268 165 19 chr5 90670966 90671087 -61866172 - ID_B1 SINE B4 -13 211 82 4 1276 357 186 29 76 chr5 90671643 90671748 -61865511 + B1F2 SINE Alu 43 142 -7 4 1276 396 0 0 0 chr5 90673657 90673701 -61863558 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1276 419 261 87 0 chr5 90673749 90673841 -61863418 - B3A SINE B2 -98 100 1 4 1276 274 214 0 3 chr5 90674029 90674098 -61863161 + B1F SINE Alu 51 147 -2 4 1276 1190 35 14 0 chr5 90674242 90674387 -61862872 + B1_Mus1 SINE Alu 2 148 0 4 1276 180 0 0 0 chr5 90674387 90674407 -61862852 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1276 375 154 0 0 chr5 90674881 90674946 -61862313 + CT-rich Low_complexity Low_complexity 2 66 0 4 1276 718 153 0 8 chr5 90674996 90675115 -61862144 - B3 SINE B2 -92 124 7 4 1276 510 250 75 0 chr5 90675539 90675659 -61861600 - B1_Mur2 SINE Alu -12 137 9 4 1276 1960 103 48 13 chr5 90675708 90676023 -61861236 + ORR1A2 LTR MaLR 2 327 0 4 1276 6860 150 94 190 chr5 90676023 90677349 -61859910 + ORR1A2-int LTR MaLR 1 1032 -931 4 1276 702 0 0 0 chr5 90677349 90677427 -61859832 + (AATAG)n Simple_repeat Simple_repeat 5 82 0 4 1276 6860 150 94 190 chr5 90677427 90678270 -61858989 + ORR1A2-int LTR MaLR 1033 1963 0 4 1276 424 178 58 29 chr5 90678270 90678346 -61858913 + ORR1A2 LTR MaLR 1 76 -270 4 1276 1100 68 0 27 chr5 90678346 90678496 -61858763 + B1_Mus2 SINE Alu 2 147 0 4 1276 424 178 58 29 chr5 90678496 90678511 -61858748 + ORR1A2 LTR MaLR 77 95 -251 4 1276 218 324 15 0 chr5 90678511 90678579 -61858680 + PB1D10 SINE Alu 1 69 -48 4 1276 1692 102 19 8 chr5 90678570 90678828 -61858431 + ORR1A2 LTR MaLR 67 327 0 4 1276 512 328 44 54 chr5 90678828 90679023 -61858236 + B4A SINE B4 13 205 -87 4 1276 414 39 0 0 chr5 90679069 90679121 -61858138 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1276 1571 21 5 21 chr5 90679182 90679375 -61857884 + B2_Mm1t SINE B2 2 191 -2 4 1276 239 250 126 32 chr5 90679720 90679815 -61857444 - PB1D9 SINE Alu -15 105 2 4 1276 481 125 0 12 chr5 90679850 90679931 -61857328 + ORR1A3-int LTR MaLR 1834 1913 -50 4 1276 441 162 16 0 chr5 90679943 90680021 -61857238 + B1_Mus2 SINE Alu 22 109 -11 4 1276 280 333 46 0 chr5 90680388 90680475 -61856784 - B1F SINE Alu -58 91 1 4 1276 391 347 77 32 chr5 90680564 90680719 -61856540 - B3 SINE B2 -6 210 49 4 1276 402 174 0 28 chr5 90680768 90680839 -61856420 - ID_B1 SINE B4 -42 182 114 4 1276 272 266 0 25 chr5 90680878 90680959 -61856300 + ID2 SINE ID 5 83 0 4 1276 895 176 190 13 chr5 90681061 90681342 -61855917 + ORR1B1 LTR MaLR 1 386 -8 4 1276 261 247 56 11 chr5 90681329 90681419 -61855840 + PB1D9 SINE Alu 27 120 0 4 1276 523 128 14 23 chr5 90682073 90682184 -61855075 + MERVL-int LTR ERVL 5259 5477 -284 4 1276 374 224 47 12 chr5 90682241 90682327 -61854932 - B1F SINE Alu -48 101 13 4 1276 242 350 0 0 chr5 90682631 90682728 -61854531 + (CTG)n Simple_repeat Simple_repeat 2 98 0 4 1276 959 86 64 7 chr5 90683187 90683327 -61853932 + B1_Mus1 SINE Alu 1 148 0 4 1276 266 275 169 32 chr5 90683506 90683630 -61853629 - B1F1 SINE Alu -8 141 1 4 1276 236 284 15 0 chr5 90683733 90683800 -61853459 + T-rich Low_complexity Low_complexity 2 69 0 4 1276 591 216 52 0 chr5 90684162 90684278 -61852981 - B1_Mur1 SINE Alu -6 143 22 4 1276 239 349 0 99 chr5 90684191 90684312 -61852947 - MT2B LTR ERVL -340 261 153 4 1276 382 316 71 66 chr5 90684450 90684633 -61852626 + B3A SINE B2 3 186 -12 4 1276 243 221 36 72 chr5 90684812 90684895 -61852364 - B1F1 SINE Alu -49 100 21 4 1276 334 176 9 0 chr5 90685136 90685200 -61852059 - B2_Mm2 SINE B2 -102 114 47 4 1276 877 64 193 0 chr5 90685260 90685400 -61851859 - B2_Mm1t SINE B2 -26 167 1 4 1276 1123 201 175 30 chr5 90685912 90686209 -61851050 + RMER10A LTR ERVL 1 340 -102 4 1276 613 304 27 11 chr5 90686237 90686423 -61850836 + B3A SINE B2 10 198 0 4 1276 2995 125 63 4 chr5 90686666 90687157 -61850102 + ORR1A3-int LTR MaLR 976 1495 -468 4 1276 258 133 16 48 chr5 90687749 90687812 -61849447 + B3 SINE B2 155 215 -1 4 1276 1048 68 7 14 chr5 90687879 90688027 -61849232 + B1_Mus1 SINE Alu 1 147 -1 4 1276 408 231 93 0 chr5 90688183 90688291 -61848968 + PB1D9 SINE Alu 3 120 0 4 1276 436 267 0 56 chr5 90688334 90688477 -61848782 + B1_Mm SINE Alu 1 135 -12 4 1276 22 0 0 0 chr5 90688487 90688509 -61848750 + AT_rich Low_complexity Low_complexity 1 22 0 4 1276 225 0 0 0 chr5 90688661 90688686 -61848573 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1276 380 305 102 0 chr5 90689537 90689655 -61847604 + B1F SINE Alu 15 144 -5 4 1276 486 198 102 55 chr5 90690055 90690183 -61847076 - B1_Mur2 SINE Alu -7 142 9 4 1276 371 244 57 23 chr5 90690889 90690977 -61846282 + B1_Mur2 SINE Alu 1 91 -58 4 1276 231 305 85 0 chr5 90691197 90691279 -61845980 + ID_B1 SINE B4 121 209 -15 4 1276 1133 66 7 0 chr5 90691454 90691606 -61845653 - B2_Mm1a SINE B2 -39 154 2 4 1276 214 274 9 128 chr5 90691606 90691713 -61845546 + PB1D9 SINE Alu 27 120 0 4 1276 240 286 25 49 chr5 90691961 90692042 -61845217 - RSINE1 SINE B4 -83 82 4 4 1276 436 264 0 0 chr5 90692686 90692777 -61844482 - B1_Mur2 SINE Alu -56 93 3 4 1276 219 146 0 0 chr5 90693204 90693245 -61844014 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1276 237 237 25 62 chr5 90693542 90693623 -61843636 + MTEb LTR MaLR 294 371 -8 4 1276 321 278 18 36 chr5 90693965 90694077 -61843182 - PB1D10 SINE Alu -5 112 3 4 1276 22 35 0 0 chr5 90694342 90694371 -61842888 + AT_rich Low_complexity Low_complexity 1 29 0 4 1276 1266 14 0 0 chr5 90695537 90695684 -61841575 + B1_Mm SINE Alu 1 147 0 4 1276 255 290 92 51 chr5 90695811 90695909 -61841350 - PB1D10 SINE Alu -3 114 13 4 1276 1043 174 236 13 chr5 90696470 90696779 -61840480 + ORR1C1 LTR MaLR 1 378 0 4 1276 261 312 78 26 chr5 90696848 90696963 -61840296 + MurSatRep1 Unknown Unknown 191 311 -1826 4 1276 224 263 138 17 chr5 90696995 90697111 -61840148 - RSINE1 SINE B4 -2 163 34 4 1276 229 250 16 32 chr5 90697886 90697948 -61839311 - PB1D10 SINE Alu -29 88 28 4 1276 227 305 157 12 chr5 90698035 90698118 -61839141 - ID_B1 SINE B4 -28 196 102 4 1276 231 311 45 80 chr5 90698205 90698317 -61838942 - PB1D10 SINE Alu -7 110 3 4 1276 208 154 39 0 chr5 90698333 90698385 -61838874 + (TA)n Simple_repeat Simple_repeat 1 54 0 4 1276 401 363 97 19 chr5 90698466 90698733 -61838526 + L1MEc LINE L1 303 590 -5810 4 1276 323 176 0 0 chr5 90698834 90698885 -61838374 + PB1D9 SINE Alu 4 54 -66 4 1276 379 277 40 0 chr5 90699159 90699260 -61837999 - B1_Mur1 SINE Alu -8 141 37 4 1276 268 264 62 23 chr5 90699291 90699419 -61837840 + Charlie5 DNA MER1_type 2251 2383 -241 4 1276 565 137 84 0 chr5 90699528 90699623 -61837636 - B1_Mur2 SINE Alu -9 140 38 4 1276 286 275 64 32 chr5 90699811 90699905 -61837354 - PB1D10 SINE Alu -20 97 1 4 1276 242 185 71 36 chr5 90699997 90700053 -61837206 - PB1D9 SINE Alu -7 113 56 4 1276 225 208 113 0 chr5 90700025 90700078 -61837181 - MT2B LTR ERVL -361 240 182 4 1276 28 29 0 0 chr5 90700851 90700886 -61836373 + AT_rich Low_complexity Low_complexity 1 35 0 4 1276 22 0 0 0 chr5 90700946 90700968 -61836291 + AT_rich Low_complexity Low_complexity 1 22 0 4 1276 216 200 0 0 chr5 90701491 90701536 -61835723 + A-rich Low_complexity Low_complexity 1 45 0 4 1276 438 236 138 23 chr5 90701574 90701704 -61835555 + B1_Mm SINE Alu 1 145 -2 4 1277 637 106 0 21 chr5 90701896 90701992 -61835267 - B1_Mus2 SINE Alu -1 146 53 4 1277 276 203 66 26 chr5 90702434 90702510 -61834749 - PB1D10 SINE Alu -2 115 37 4 1277 678 297 25 25 chr5 90702875 90703075 -61834184 - ID_B1 SINE B4 -23 201 2 4 1277 25 51 0 0 chr5 90703623 90703662 -61833597 + AT_rich Low_complexity Low_complexity 1 39 0 4 1277 321 135 0 0 chr5 90703888 90703940 -61833319 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 4 1277 688 247 71 0 chr5 90703948 90704130 -61833129 - B3 SINE B2 -6 210 16 4 1277 377 174 284 9 chr5 90704177 90704293 -61832966 - B1_Mur3 SINE Alu 0 149 2 4 1277 475 320 44 30 chr5 90704809 90705012 -61832247 + B3 SINE B2 5 210 -6 4 1277 532 215 37 18 chr5 90705044 90705153 -61832106 + PB1D9 SINE Alu 9 119 -1 4 1277 255 125 0 0 chr5 90705327 90705367 -61831892 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1277 813 161 0 0 chr5 90705384 90705514 -61831745 - B3 SINE B2 -86 130 1 5 1277 360 295 212 9 chr5 90705610 90705723 -61831536 - ID_B1 SINE B4 -4 220 85 5 1277 255 318 38 53 chr5 90705780 90705913 -61831346 + RMER12 LTR ERVK 746 876 -446 5 1277 484 195 0 22 chr5 90706024 90706113 -61831146 - PB1D9 SINE Alu -5 115 29 5 1277 21 0 0 0 chr5 90706306 90706327 -61830932 + AT_rich Low_complexity Low_complexity 1 21 0 5 1277 358 227 134 0 chr5 90706328 90706425 -61830834 + PB1D7 SINE Alu 1 110 -10 5 1277 487 222 28 9 chr5 90706626 90706735 -61830524 - ID_B1 SINE B4 -10 214 104 5 1277 1169 74 0 0 chr5 90706803 90706951 -61830308 + B1_Mus1 SINE Alu 1 148 0 5 1277 197 132 26 0 chr5 90706953 90706991 -61830268 + A-rich Low_complexity Low_complexity 2 40 0 5 1277 349 279 62 18 chr5 90707014 90707127 -61830132 - B1F SINE Alu -31 118 1 5 1277 251 211 0 34 chr5 90708715 90708774 -61828485 - B1F SINE Alu -86 63 7 5 1277 599 325 0 6 chr5 90708901 90709068 -61828191 - ID_B1 SINE B4 -57 167 2 5 1277 216 0 0 0 chr5 90709969 90709993 -61827266 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1277 1157 104 60 5 chr5 90710491 90710675 -61826584 - B2_Mm2 SINE B2 -1 194 1 5 1277 309 109 0 0 chr5 90711761 90711807 -61825452 + (A)n Simple_repeat Simple_repeat 1 46 0 5 1277 42 0 0 0 chr5 90713412 90713454 -61823805 + AT_rich Low_complexity Low_complexity 1 42 0 5 1277 469 231 118 59 chr5 90715042 90715212 -61822047 - B3A SINE B2 -18 180 1 5 1277 415 321 80 0 chr5 90715266 90715403 -61821856 - RSINE1 SINE B4 -13 152 5 5 1277 263 295 73 8 chr5 90715435 90715558 -61821701 - L1MC5 LINE L1 -71 7890 7760 5 1277 376 242 222 3 chr5 90715692 90715845 -61821414 + B3A SINE B2 17 202 -14 5 1277 297 250 36 135 chr5 90715978 90716089 -61821170 + B1_Mus2 SINE Alu 42 141 -6 5 1277 194 0 0 37 chr5 90716383 90716410 -61820849 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 5 1277 285 325 0 12 chr5 90716747 90716831 -61820428 - ID_B1 SINE B4 -7 217 135 5 1277 391 267 98 8 chr5 90717427 90717559 -61819700 - B1F SINE Alu 0 149 6 5 1277 463 269 26 52 chr5 90717874 90718027 -61819232 + RSINE1 SINE B4 11 159 -6 5 1277 28 61 0 0 chr5 90718027 90718076 -61819183 + AT_rich Low_complexity Low_complexity 1 49 0 5 1277 214 309 0 0 chr5 90718760 90718815 -61818444 - MIR SINE MIR -1 261 207 5 1277 219 200 44 0 chr5 90718862 90718907 -61818352 - ID4 SINE ID -7 76 30 5 1277 897 81 0 20 chr5 90721088 90721240 -61816019 + (TCTA)n Simple_repeat Simple_repeat 4 152 0 5 1277 213 244 0 0 chr5 90721748 90721789 -61815470 + (TATG)n Simple_repeat Simple_repeat 3 43 0 5 1277 449 285 53 2 chr5 90721796 90721933 -61815326 - B1_Mur2 SINE Alu -2 147 2 5 1277 512 313 30 8 chr5 90721948 90722080 -61815179 - B1F1 SINE Alu -14 135 1 5 1277 483 292 105 6 chr5 90722458 90722620 -61814639 - B3 SINE B2 -38 178 1 5 1277 1257 98 60 0 chr5 90723758 90723942 -61813317 + B2_Mm2 SINE B2 1 195 0 5 1277 1123 75 0 0 chr5 90724040 90724186 -61813073 + B1_Mus2 SINE Alu 2 147 0 5 1277 228 86 0 0 chr5 90724199 90724234 -61813025 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1277 556 305 60 0 chr5 90724919 90724995 -61812264 + RSINE1 SINE B4 6 81 -84 5 1277 189 0 0 0 chr5 90724995 90725016 -61812243 + (GGA)n Simple_repeat Simple_repeat 1 21 0 5 1277 556 305 60 0 chr5 90725016 90725090 -61812169 + RSINE1 SINE B4 82 163 -2 5 1277 212 384 23 0 chr5 90725265 90725351 -61811908 + PB1D10 SINE Alu 1 88 -29 5 1277 289 283 29 93 chr5 90725419 90725559 -61811700 + BC1_Mm scRNA scRNA 10 140 -12 5 1277 654 298 139 28 chr5 90725568 90725927 -61811332 + Lx9 LINE L1 7197 7595 -49 5 1277 366 259 27 2 chr5 90726234 90726333 -61810926 - B1F SINE Alu -1 116 13 5 1277 24 0 0 0 chr5 90726731 90726755 -61810504 + AT_rich Low_complexity Low_complexity 1 24 0 5 1277 44 56 0 0 chr5 90726795 90726867 -61810392 + AT_rich Low_complexity Low_complexity 1 72 0 5 1277 1161 54 0 13 chr5 90727376 90727525 -61809734 - B1_Mus2 SINE Alu 0 147 1 5 1277 21 57 0 0 chr5 90727887 90727922 -61809337 + AT_rich Low_complexity Low_complexity 1 35 0 5 1277 248 271 35 0 chr5 90728135 90728220 -61809039 - B4A SINE B4 -199 93 6 5 1277 597 300 19 9 chr5 90729938 90730150 -61807109 - B3 SINE B2 0 216 3 5 1277 371 386 118 51 chr5 90730213 90730647 -61806612 + MLT1E3 LTR MaLR 159 621 -3 5 1277 301 280 122 39 chr5 90730856 90731012 -61806247 + HAL1 LINE L1 1506 1674 -833 5 1277 1031 132 33 0 chr5 90731389 90731541 -61805718 + B2_Mm2 SINE B2 2 158 -37 5 1277 192 40 0 0 chr5 90731541 90731566 -61805693 + (CAAT)n Simple_repeat Simple_repeat 1 25 0 5 1277 758 177 37 12 chr5 90731771 90731952 -61805307 + B3 SINE B2 1 193 0 5 1277 528 237 109 34 chr5 90732139 90732314 -61804945 + MER82 DNA MER2_type 151 338 -315 5 1277 276 271 41 124 chr5 90732334 90732431 -61804828 - B1F SINE Alu -60 89 1 5 1277 208 301 0 14 chr5 90733092 90733166 -61804093 + A-rich Low_complexity Low_complexity 2 74 0 5 1277 898 136 8 0 chr5 90733304 90733436 -61803823 + B1_Mur4 SINE Alu 5 137 -13 5 1277 243 0 0 0 chr5 90733436 90733463 -61803796 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 5 1277 340 247 71 20 chr5 90733700 90733799 -61803460 - Charlie1a DNA MER1_type -697 758 655 5 1277 1196 34 0 0 chr5 90733805 90733952 -61803307 + B1_Mus2 SINE Alu 1 147 0 5 1277 381 93 0 0 chr5 90733952 90734006 -61803253 + (A)n Simple_repeat Simple_repeat 1 54 0 5 1277 363 256 0 62 chr5 90734211 90734307 -61802952 + B2_Mm2 SINE B2 2 91 -104 5 1277 344 366 134 0 chr5 90734398 90734600 -61802659 - Charlie1a DNA MER1_type -1199 256 28 5 1277 587 214 194 11 chr5 90734804 90734984 -61802275 + B3 SINE B2 1 213 -3 5 1277 319 331 94 8 chr5 90735405 90735533 -61801726 + RSINE1 SINE B4 1 139 -26 5 1277 214 308 49 41 chr5 90735701 90735823 -61801436 + RSINE1 SINE B4 41 163 -2 5 1277 1561 47 5 0 chr5 90735832 90736024 -61801235 - B2_Mm1t SINE B2 0 193 1 5 1277 23 0 0 0 chr5 90736116 90736139 -61801120 + AT_rich Low_complexity Low_complexity 1 23 0 5 1277 1606 91 140 8 chr5 90736514 90736779 -61800480 + ORR1A2 LTR MaLR 28 327 0 5 1277 6910 160 166 20 chr5 90736779 90738341 -61798918 + ORR1A2-int LTR MaLR 1 1790 -2 5 1277 1835 78 46 36 chr5 90738341 90738622 -61798637 + ORR1A2 LTR MaLR 36 319 -8 5 1277 741 225 0 8 chr5 90739874 90740004 -61797255 - RSINE1 SINE B4 -26 139 11 5 1277 239 238 233 23 chr5 90740160 90740246 -61797013 - MER20 DNA MER1_type -100 119 16 5 1277 472 272 139 48 chr5 90740537 90740703 -61796556 - ID_B1 SINE B4 -1 223 43 5 1277 35 63 0 0 chr5 90740709 90740772 -61796487 + AT_rich Low_complexity Low_complexity 1 63 0 5 1277 268 250 0 0 chr5 90740772 90740824 -61796435 - ID SINE ID -171 53 2 5 1277 28 0 0 0 chr5 90741017 90741045 -61796214 + AT_rich Low_complexity Low_complexity 1 28 0 5 1277 790 177 0 7 chr5 90741045 90741187 -61796072 - B1_Mus1 SINE Alu -7 141 1 5 1277 785 34 246 0 chr5 90741236 90741354 -61795905 + B1_Mus2 SINE Alu 1 147 0 5 1277 264 91 0 0 chr5 90741354 90741398 -61795861 + (A)n Simple_repeat Simple_repeat 1 44 0 5 1277 554 217 8 17 chr5 90742235 90742352 -61794907 + RSINE1 SINE B4 4 119 -46 5 1277 370 214 71 79 chr5 90742417 90742544 -61794715 - PB1 SINE Alu -1 126 1 5 1277 21 0 0 0 chr5 90742733 90742754 -61794505 + AT_rich Low_complexity Low_complexity 1 21 0 5 1277 718 110 75 17 chr5 90742988 90743108 -61794151 + B1_Mur4 SINE Alu 23 149 -1 5 1277 324 306 0 61 chr5 90743531 90743646 -61793613 + RSINE1 SINE B4 56 163 -2 5 1277 415 294 27 48 chr5 90744458 90744644 -61792615 + B3A SINE B2 1 182 -16 5 1277 189 0 0 0 chr5 90744644 90744665 -61792594 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1277 22 0 0 0 chr5 90745960 90745982 -61791277 + AT_rich Low_complexity Low_complexity 1 22 0 5 1277 424 312 18 9 chr5 90746468 90746581 -61790678 + PB1D9 SINE Alu 2 115 -5 5 1277 1280 106 21 5 chr5 90746587 90746776 -61790483 + B2_Mm2 SINE B2 2 193 -2 5 1277 207 96 38 19 chr5 90746940 90746993 -61790266 + A-rich Low_complexity Low_complexity 3 56 0 5 1277 1092 204 6 14 chr5 90747212 90747488 -61789771 + L1M5 LINE L1 4418 4699 -1447 5 1277 318 338 7 27 chr5 90748121 90748267 -61788992 + L1M5 LINE L1 5633 5775 -2107 5 1277 21 0 0 0 chr5 90748675 90748696 -61788563 + AT_rich Low_complexity Low_complexity 1 21 0 5 1277 699 291 15 25 chr5 90748760 90748964 -61788295 + B3 SINE B2 15 216 0 5 1277 278 263 146 10 chr5 90749340 90749382 -61787877 - PB1D10 SINE Alu 0 117 9 5 1277 278 241 0 0 chr5 90749382 90749436 -61787823 - ID_B1 SINE B4 -81 143 90 5 1277 435 229 45 27 chr5 90749463 90749575 -61787684 - B1_Mur2 SINE Alu -8 141 28 5 1277 459 247 0 0 chr5 90749693 90749790 -61787469 - B3 SINE B2 -119 97 1 5 1277 859 300 109 53 chr5 90749918 90750840 -61786419 - L1M5 LINE L1 -796 5350 4377 5 1277 238 296 173 0 chr5 90751196 90751277 -61785982 - RSINE1 SINE B4 -46 119 25 5 1277 243 218 0 0 chr5 90751386 90751441 -61785818 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 5 1277 347 245 120 11 chr5 90751480 90751670 -61785589 - L1M5 LINE L1 -2610 3536 3320 5 1277 438 276 28 124 chr5 90751753 90751931 -61785328 - RSINE1 SINE B4 -4 161 1 5 1277 681 95 39 0 chr5 90752054 90752165 -61785094 - B1_Mus2 SINE Alu -8 142 2 5 1277 360 308 50 43 chr5 90752725 90752864 -61784395 + RSINE1 SINE B4 4 143 -22 5 1277 606 248 21 0 chr5 90753346 90753487 -61783772 + B1_Mur1 SINE Alu 6 149 0 6 1277 497 250 47 18 chr5 90753764 90753912 -61783347 + B3 SINE B2 21 178 -17 6 1277 433 230 15 2 chr5 90754302 90754409 -61782850 - B1_Mus2 SINE Alu -40 109 1 6 1277 189 107 0 0 chr5 90754465 90754493 -61782766 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 6 1277 248 345 137 34 chr5 90754518 90754635 -61782624 - RSINE1 SINE B4 -32 133 5 6 1277 22 80 0 0 chr5 90754645 90754695 -61782564 + AT_rich Low_complexity Low_complexity 1 50 0 6 1277 576 286 66 62 chr5 90755162 90755419 -61781840 + Lx8 LINE L1 6089 6346 -1127 6 1277 193 296 66 81 chr5 90755816 90755952 -61781307 + L2a LINE L2 3266 3399 -27 6 1277 518 269 62 77 chr5 90756617 90756741 -61780518 + L1M2 LINE L1 5346 5483 -685 6 1277 268 294 97 10 chr5 90756741 90756844 -61780415 + PB1D9 SINE Alu 1 112 -8 6 1277 518 259 32 82 chr5 90756844 90757006 -61780253 + L1M2 LINE L1 5484 5636 -655 6 1277 44 20 0 0 chr5 90757158 90757209 -61780050 + AT_rich Low_complexity Low_complexity 1 51 0 6 1277 712 310 124 12 chr5 90757499 90757927 -61779332 + L1M5 LINE L1 2352 2827 -3319 6 1277 387 276 164 23 chr5 90758140 90758403 -61778856 + L1MC LINE L1 2878 3177 -2969 6 1277 276 148 0 0 chr5 90758694 90758755 -61778504 + (TA)n Simple_repeat Simple_repeat 1 61 0 6 1277 363 285 113 40 chr5 90758854 90759004 -61778255 + RSINE1 SINE B4 5 165 0 6 1277 198 0 0 0 chr5 90760067 90760089 -61777170 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1277 416 275 90 22 chr5 90760129 90760263 -61776996 - B4A SINE B4 -123 169 27 6 1277 180 0 0 0 chr5 90760282 90760302 -61776957 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1277 360 0 0 0 chr5 90760343 90760383 -61776876 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1277 370 293 60 10 chr5 90760409 90760509 -61776750 - RSINE1 SINE B4 -57 108 4 6 1277 289 58 39 0 chr5 90760534 90760586 -61776673 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 1277 439 236 47 0 chr5 90760843 90760949 -61776310 - PB1D9 SINE Alu -1 119 9 6 1277 574 232 71 40 chr5 90761124 90761322 -61775937 + B3 SINE B2 1 204 -12 6 1277 542 278 91 32 chr5 90762348 90762567 -61774692 + Charlie1a DNA MER1_type 520 751 -704 6 1277 261 0 0 0 chr5 90762598 90762627 -61774632 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1277 485 279 19 52 chr5 90762652 90762807 -61774452 - RSINE1 SINE B4 -12 153 4 6 1277 236 333 52 43 chr5 90762938 90763054 -61774205 + RSINE1 SINE B4 49 165 0 6 1277 658 229 158 60 chr5 90763072 90763453 -61773806 + Charlie1a DNA MER1_type 958 1375 -80 6 1277 25 65 0 0 chr5 90765668 90765714 -61771545 + AT_rich Low_complexity Low_complexity 1 46 0 6 1277 21 0 0 0 chr5 90766376 90766397 -61770862 + AT_rich Low_complexity Low_complexity 1 21 0 6 1277 46 45 0 0 chr5 90766525 90766592 -61770667 + AT_rich Low_complexity Low_complexity 1 67 0 6 1277 301 304 118 56 chr5 90769682 90769877 -61767382 - MIR SINE MIR -24 238 32 6 1277 39 60 0 0 chr5 90770805 90770872 -61766387 + AT_rich Low_complexity Low_complexity 1 67 0 6 1277 248 324 53 13 chr5 90771591 90771666 -61765593 + ID2 SINE ID 3 80 -3 6 1277 297 216 68 0 chr5 90771879 90771953 -61765306 + MER2 DNA MER2_type 152 230 -115 6 1277 270 0 0 0 chr5 90772749 90772779 -61764480 + (TA)n Simple_repeat Simple_repeat 1 30 0 6 1277 258 319 52 26 chr5 90773111 90773227 -61764032 - PB1D9 SINE Alu 0 120 2 6 1277 200 380 42 0 chr5 90773765 90773836 -61763423 - L2b LINE L2 -3 3372 3299 6 1277 1137 86 65 1 chr5 90774380 90774560 -61762699 - B2_Mm2 SINE B2 -1 192 1 6 1277 249 163 0 0 chr5 90775213 90775256 -61762003 - B3 SINE B2 -10 206 164 6 1277 1037 149 46 0 chr5 90775336 90775510 -61761749 + ORR1C2 LTR MaLR 202 383 -1 6 1277 342 277 152 28 chr5 90775819 90775964 -61761295 + B3A SINE B2 1 163 -35 6 1277 999 127 14 0 chr5 90776404 90776546 -61760713 + B1_Mus1 SINE Alu 2 145 -3 6 1277 246 32 0 0 chr5 90776546 90776577 -61760682 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1277 207 100 0 0 chr5 90776629 90776659 -61760600 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 6 1277 334 258 137 18 chr5 90776724 90776849 -61760410 + B1_Mur1 SINE Alu 6 147 -2 6 1277 2435 252 107 30 chr5 90776838 90777671 -61759588 + RCHARR1 DNA MER1_type 76 972 -2 6 1277 838 228 23 23 chr5 90777941 90778116 -61759143 + B3 SINE B2 17 191 -25 6 1277 186 167 0 0 chr5 90778117 90778153 -61759106 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 6 1277 513 261 153 8 chr5 90778325 90778456 -61758803 + RSINE1 SINE B4 14 163 -2 6 1277 183 275 130 11 chr5 90779083 90779175 -61758084 + MIRb SINE MIR 65 167 -101 6 1277 220 321 127 56 chr5 90779360 90779502 -61757757 + RSINE1 SINE B4 2 153 -12 6 1277 22 0 0 0 chr5 90779652 90779674 -61757585 + AT_rich Low_complexity Low_complexity 1 22 0 6 1277 889 179 126 10 chr5 90780185 90780383 -61756876 + URR1A DNA MER1_type 6 226 0 6 1277 438 75 0 0 chr5 90780724 90780791 -61756468 + (CA)n Simple_repeat Simple_repeat 1 67 0 6 1277 320 200 290 1 chr5 90780968 90781079 -61756180 - B4A SINE B4 -66 226 83 6 1277 826 106 0 0 chr5 90781148 90781261 -61755998 + B1_Mus1 SINE Alu 1 113 -35 6 1277 343 321 18 18 chr5 90781340 90781451 -61755808 + PB1D10 SINE Alu 5 115 -2 6 1277 636 220 0 30 chr5 90781916 90782047 -61755212 + B1_Mur2 SINE Alu 4 130 -19 6 1277 875 134 259 12 chr5 90782048 90782214 -61755045 + B3 SINE B2 1 207 -9 6 1277 231 36 0 0 chr5 90782225 90782253 -61755006 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1277 1294 41 0 0 chr5 90782323 90782468 -61754791 + B1_Mm SINE Alu 3 147 0 6 1277 1437 179 111 29 chr5 90782591 90782941 -61754318 + Lx4B LINE L1 6676 7054 -4 6 1277 497 291 134 28 chr5 90783060 90783314 -61753945 + B4A SINE B4 6 286 -6 6 1277 1304 184 10 0 chr5 90783593 90783800 -61753459 + B3 SINE B2 1 209 -7 6 1277 266 222 36 116 chr5 90784584 90784696 -61752563 + MLT1J LTR MaLR 142 244 -268 6 1277 744 271 118 46 chr5 90784707 90785012 -61752247 - MLT1B LTR MaLR -2 388 62 6 1277 328 294 47 0 chr5 90785104 90785146 -61752113 + MER3 DNA MER1_type 2 47 -162 6 1277 552 257 87 7 chr5 90785146 90785295 -61751964 - MER3 DNA MER1_type 0 209 49 6 1277 1257 48 0 7 chr5 90785997 90786145 -61751114 + B1_Mm SINE Alu 1 147 0 6 1277 438 247 61 37 chr5 90786164 90786328 -61750931 + MLT1E3 LTR MaLR 53 220 -404 6 1277 246 188 0 0 chr5 90786570 90786618 -61750641 + MLT2F LTR ERVL 512 559 -4 6 1277 207 0 0 0 chr5 90786727 90786750 -61750509 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1277 1276 83 32 22 chr5 90786755 90786940 -61750319 + B2_Mm2 SINE B2 2 188 -7 6 1277 351 304 29 0 chr5 90787048 90787150 -61750109 + RSINE1 SINE B4 1 105 -60 6 1277 1548 75 0 0 chr5 90788741 90788927 -61748332 + B2_Mm1a SINE B2 2 187 -6 6 1277 683 152 9 0 chr5 90788937 90789049 -61748210 + B1_Mur4 SINE Alu 1 113 -37 6 1277 1372 71 37 26 chr5 90789248 90789437 -61747822 + B2_Mm2 SINE B2 1 191 -4 6 1277 300 278 86 9 chr5 90789929 90790045 -61747214 + MIRb SINE MIR 24 148 -120 6 1277 316 159 0 137 chr5 90790076 90790149 -61747110 - RSINE1 SINE B4 -35 130 68 6 1277 429 301 81 6 chr5 90790432 90790606 -61746653 - MIR SINE MIR -64 198 12 6 1277 503 172 12 38 chr5 90790779 90790898 -61746361 + B1_Mur4 SINE Alu 2 150 0 6 1277 21 36 0 0 chr5 90793862 90793890 -61743369 + AT_rich Low_complexity Low_complexity 1 28 0 6 1277 294 29 0 0 chr5 90794078 90794113 -61743146 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1277 205 162 0 0 chr5 90794699 90794736 -61742523 + CT-rich Low_complexity Low_complexity 2 38 0 6 1277 183 242 0 0 chr5 90794754 90794816 -61742443 + (CCG)n Simple_repeat Simple_repeat 3 64 0 6 1277 186 43 0 0 chr5 90794873 90794896 -61742363 + (CTG)n Simple_repeat Simple_repeat 3 25 0 6 1277 193 140 0 34 chr5 90794965 90795024 -61742235 + (CCG)n Simple_repeat Simple_repeat 1 57 0 6 1277 279 161 0 0 chr5 90795175 90795231 -61742028 + (CCG)n Simple_repeat Simple_repeat 3 58 0 6 1277 283 78 19 19 chr5 90795283 90795335 -61741924 + (GGGA)n Simple_repeat Simple_repeat 4 55 0 6 1277 336 175 0 0 chr5 90795474 90795537 -61741722 + (CGAG)n Simple_repeat Simple_repeat 4 66 0 6 1277 23 0 0 0 chr5 90795659 90795682 -61741577 + GC_rich Low_complexity Low_complexity 1 23 0 6 1277 180 97 0 0 chr5 90795744 90795775 -61741484 + (CGAG)n Simple_repeat Simple_repeat 4 34 0 6 1277 282 167 66 16 chr5 90796302 90796363 -61740896 - PB1D7 SINE Alu -5 115 52 6 1277 234 184 0 0 chr5 90796564 90796613 -61740646 + T-rich Low_complexity Low_complexity 1 49 0 6 1277 308 214 0 0 chr5 90797700 90797756 -61739503 - PB1D7 SINE Alu -64 56 1 6 1277 594 215 9 9 chr5 90797987 90798095 -61739164 + B3A SINE B2 2 109 -89 6 1277 255 309 104 82 chr5 90798095 90798121 -61739138 + B4A SINE B4 2 138 -154 6 1277 324 231 0 0 chr5 90798173 90798251 -61739008 + (TA)n Simple_repeat Simple_repeat 2 79 0 6 1277 2160 136 113 3 chr5 90798835 90799205 -61738054 + MTC LTR MaLR 1 411 -10 6 1277 6573 160 67 58 chr5 90799933 90800946 -61736313 + MTC-int LTR MaLR 1 1047 -211 6 1277 279 0 0 0 chr5 90800946 90800977 -61736282 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1277 1198 73 0 0 chr5 90800977 90801114 -61736145 - B1_Mm SINE Alu -10 137 1 6 1277 6573 160 67 58 chr5 90801114 90801345 -61735914 + MTC-int LTR MaLR 1048 1257 -1 6 1277 2270 156 29 29 chr5 90801349 90801551 -61735708 + MTC LTR MaLR 5 210 -211 6 1277 2656 22 139 9 chr5 90801551 90801867 -61735392 - IAPEY2_LTR LTR ERVK 0 357 1 7 1277 2270 156 29 29 chr5 90801867 90802081 -61735178 + MTC LTR MaLR 211 421 0 6 1277 21 0 0 0 chr5 90802676 90802697 -61734562 + AT_rich Low_complexity Low_complexity 1 21 0 7 1277 601 276 6 35 chr5 90803080 90803249 -61734010 + RSINE1 SINE B4 2 165 0 7 1277 240 35 0 0 chr5 90803519 90803548 -61733711 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 1277 354 316 32 0 chr5 90803784 90803879 -61733380 - PB1D7 SINE Alu -20 100 3 7 1277 314 325 134 6 chr5 90804582 90804746 -61732513 + L1MCa LINE L1 120 304 -6204 7 1277 302 290 225 0 chr5 90804985 90805123 -61732136 + L1MCa LINE L1 659 827 -5681 7 1277 223 322 115 0 chr5 90805233 90805320 -61731939 + RSINE1 SINE B4 66 162 -3 7 1277 218 192 0 19 chr5 90805571 90805624 -61731635 + G-rich Low_complexity Low_complexity 6 57 0 7 1277 993 305 77 12 chr5 90805817 90806378 -61730881 - L1MEg LINE L1 -2155 4164 3568 7 1277 595 219 131 48 chr5 90806547 90806715 -61730544 - B3A SINE B2 -15 183 2 7 1277 216 0 0 0 chr5 90806736 90806760 -61730499 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1277 738 219 14 21 chr5 90806954 90807094 -61730165 - RSINE1 SINE B4 -10 155 17 7 1277 34 42 0 0 chr5 90807336 90807384 -61729875 + AT_rich Low_complexity Low_complexity 1 48 0 7 1277 402 272 248 30 chr5 90807384 90807683 -61729576 - L1MEg LINE L1 -4573 1842 1446 7 1277 347 252 75 87 chr5 90808107 90808268 -61728991 - L1MEg LINE L1 -6206 194 36 7 1277 259 229 57 57 chr5 90808617 90808705 -61728554 - MTEb LTR MaLR 0 379 292 7 1277 198 0 0 0 chr5 90809140 90809162 -61728097 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 7 1277 590 100 0 10 chr5 90809928 90810017 -61727242 + (TC)n Simple_repeat Simple_repeat 2 90 0 7 1277 216 0 0 0 chr5 90810017 90810041 -61727218 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1277 590 100 0 10 chr5 90810041 90810052 -61727207 + (TC)n Simple_repeat Simple_repeat 1 11 0 7 1277 693 21 10 21 chr5 90810073 90810170 -61727089 + (TTCTC)n Simple_repeat Simple_repeat 4 99 0 7 1277 653 278 101 14 chr5 90810171 90810455 -61726804 + L1MA4 LINE L1 5688 5992 -299 7 1277 180 0 0 0 chr5 90811026 90811046 -61726213 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1277 281 275 39 77 chr5 90811308 90811438 -61725821 - L2b LINE L2 -1 3425 3276 7 1277 575 304 20 0 chr5 90811535 90811683 -61725576 + B3A SINE B2 1 151 -47 7 1277 393 22 0 0 chr5 90811698 90811744 -61725515 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1277 249 305 146 43 chr5 90811779 90812060 -61725199 - L2b LINE L2 -523 2896 2587 7 1277 221 329 12 12 chr5 90812186 90812269 -61724990 - L2b LINE L2 -2908 511 429 7 1277 1303 258 51 22 chr5 90812889 90813341 -61723918 + L1M2 LINE L1 4357 4821 -1322 7 1277 313 189 0 19 chr5 90813389 90813443 -61723816 + B1_Mur2 SINE Alu 85 137 -12 7 1277 180 0 0 0 chr5 90813444 90813464 -61723795 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 7 1277 7246 88 53 3 chr5 90813497 90814803 -61722456 + L1_Mus3 LINE L1 5263 6637 -1 7 1277 1076 92 35 0 chr5 90814808 90814949 -61722310 + B1_Mm SINE Alu 2 147 0 7 1277 190 0 0 62 chr5 90814973 90815005 -61722254 + (GTTTG)n Simple_repeat Simple_repeat 2 31 0 7 1277 1106 86 0 0 chr5 90815005 90815144 -61722115 - B1_Mus1 SINE Alu -9 139 1 7 1277 33 0 0 0 chr5 90815144 90815177 -61722082 + AT_rich Low_complexity Low_complexity 1 33 0 7 1277 370 239 130 34 chr5 90815192 90815400 -61721859 - Lx9 LINE L1 -4 7640 7413 7 1277 971 161 0 6 chr5 90815408 90815589 -61721670 + GA-rich Low_complexity Low_complexity 1 180 0 7 1277 715 75 0 0 chr5 90815611 90815704 -61721555 - B2_Mm2 SINE B2 -100 95 3 7 1277 200 86 29 0 chr5 90815751 90815786 -61721473 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 1277 394 279 9 35 chr5 90815787 90815902 -61721357 - PB1D10 SINE Alu -1 116 5 7 1277 405 0 0 0 chr5 90816076 90816121 -61721138 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1277 252 281 118 21 chr5 90816250 90816410 -61720849 - MIR SINE MIR -72 196 20 7 1277 290 285 45 95 chr5 90816934 90817168 -61720091 + MTEb LTR MaLR 118 371 -8 7 1277 2296 158 42 3 chr5 90817251 90817607 -61719652 - Lx4A LINE L1 -1 7057 6688 7 1277 843 116 132 0 chr5 90817666 90817795 -61719464 + B1_Mur3 SINE Alu 2 147 -2 7 1277 364 291 0 34 chr5 90818108 90818197 -61719062 - PB1D10 SINE Alu 0 117 32 7 1277 50 83 0 0 chr5 90819794 90819914 -61717345 + AT_rich Low_complexity Low_complexity 1 120 0 7 1277 967 162 0 0 chr5 90820071 90820219 -61717040 - B1_Mus1 SINE Alu 0 148 1 7 1277 342 0 0 0 chr5 90820456 90820494 -61716765 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1277 645 299 66 35 chr5 90820494 90820841 -61716418 + Lx9 LINE L1 7241 7598 -46 7 1277 1096 97 0 0 chr5 90820917 90821056 -61716203 + B1_Mus1 SINE Alu 1 139 -9 7 1277 226 0 0 56 chr5 90821056 90821092 -61716167 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 7 1277 234 0 0 0 chr5 90821097 90821123 -61716136 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1277 545 262 48 28 chr5 90821286 90821431 -61715828 + B1F1 SINE Alu 1 148 -1 7 1277 707 103 10 0 chr5 90821454 90821551 -61715708 + B1_Mus1 SINE Alu 35 132 -16 7 1277 3404 55 2 15 chr5 90822472 90822877 -61714382 + MTB LTR MaLR 1 400 0 7 1277 228 35 0 0 chr5 90823098 90823127 -61714132 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1277 202 56 27 27 chr5 90824079 90824116 -61713143 + (CCCCCA)n Simple_repeat Simple_repeat 1 37 0 7 1277 862 193 53 0 chr5 90824292 90824463 -61712796 - ORR1D2 LTR MaLR 0 370 191 7 1277 234 279 101 34 chr5 90824466 90824555 -61712704 + B4A SINE B4 177 271 -21 7 1277 786 254 52 5 chr5 90824658 90824852 -61712407 - B3 SINE B2 -4 212 10 7 1277 22 57 0 19 chr5 90824872 90824911 -61712348 + AT_rich Low_complexity Low_complexity 1 39 0 7 1277 496 229 84 65 chr5 90824911 90825065 -61712194 - RSINE1 SINE B4 -5 160 4 7 1277 22 57 0 19 chr5 90825065 90825079 -61712180 + AT_rich Low_complexity Low_complexity 1 14 0 7 1277 447 319 0 41 chr5 90825086 90825233 -61712026 - RSINE1 SINE B4 -6 159 19 7 1277 210 37 0 0 chr5 90825237 90825264 -61711995 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1277 1556 168 11 16 chr5 90825277 90825606 -61711653 + ORR1B1 LTR MaLR 1 385 -9 7 1277 1135 76 14 0 chr5 90826422 90826567 -61710692 + B1_Mus1 SINE Alu 2 148 0 7 1277 1849 84 30 4 chr5 90826614 90826876 -61710383 - L1_Mus3 LINE L1 -2 6636 6368 7 1277 279 146 42 0 chr5 90827242 90827290 -61709969 - ORR1B2 LTR MaLR -317 50 1 7 1277 775 214 8 0 chr5 90827377 90827508 -61709751 + B1_Mus2 SINE Alu 3 134 -13 7 1277 624 208 0 32 chr5 90827639 90827763 -61709496 - PB1D9 SINE Alu 0 120 1 7 1277 432 118 0 0 chr5 90828015 90828083 -61709176 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1277 552 255 59 100 chr5 90829105 90829275 -61707984 - RSINE1 SINE B4 0 165 3 7 1277 484 242 94 50 chr5 90829339 90829539 -61707720 - L1MA4 LINE L1 -284 6016 5808 7 1277 286 125 42 0 chr5 90829593 90829641 -61707618 - ORR1B2 LTR MaLR -317 50 1 7 1277 276 264 14 0 chr5 90830266 90830338 -61706921 + MLT1I LTR MaLR 94 166 -245 7 1277 471 165 0 0 chr5 90830546 90830631 -61706628 + (TA)n Simple_repeat Simple_repeat 2 86 0 7 1277 275 255 60 35 chr5 90830674 90830769 -61706490 + PB1D7 SINE Alu 43 146 -1 7 1277 2146 139 102 11 chr5 90830844 90831215 -61706044 + MTC LTR MaLR 9 413 -8 7 1277 288 185 0 0 chr5 90831321 90831375 -61705884 + B3 SINE B2 61 114 -102 7 1277 1471 28 32 48 chr5 90831410 90831599 -61705660 + B2_Mm2 SINE B2 2 187 -8 7 1277 207 0 0 0 chr5 90832568 90832591 -61704668 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1278 574 275 30 36 chr5 90833148 90833314 -61703945 - B3 SINE B2 -5 211 47 7 1278 359 176 108 8 chr5 90833314 90833434 -61703825 - L1MB8 LINE L1 -19 6159 6028 7 1278 189 0 0 0 chr5 90833793 90833814 -61703445 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 7 1278 656 115 8 0 chr5 90834098 90834220 -61703039 + (TCTA)n Simple_repeat Simple_repeat 4 126 0 7 1278 504 0 0 0 chr5 90835370 90835426 -61701833 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1278 510 308 93 15 chr5 90835900 90836240 -61701019 - MLT2B4 LTR ERVL -14 542 117 7 1278 1487 201 56 7 chr5 90836345 90836757 -61700502 + L1VL1 LINE L1 644 1075 -5347 7 1278 2242 275 51 57 chr5 90836752 90838027 -61699232 - L1_Mur3 LINE L1 -3407 2473 1207 7 1278 2715 130 217 20 chr5 90838473 90839068 -61698191 - RMER6A LTR ERVK -44 712 1 7 1278 29 28 0 0 chr5 90839295 90839331 -61697928 + AT_rich Low_complexity Low_complexity 1 36 0 7 1278 1687 21 0 0 chr5 90839403 90839593 -61697666 - B2_Mm1a SINE B2 -3 190 1 7 1278 1435 43 0 31 chr5 90839686 90839879 -61697380 + B2_Mm2 SINE B2 1 187 -8 7 1278 26 30 0 0 chr5 90840646 90840679 -61696580 + AT_rich Low_complexity Low_complexity 1 33 0 7 1278 793 230 0 7 chr5 90840700 90840849 -61696410 - B3 SINE B2 -67 149 2 7 1278 1251 57 0 0 chr5 90841086 90841244 -61696015 + B2_Mm2 SINE B2 1 158 -37 7 1278 419 0 0 19 chr5 90841245 90841297 -61695962 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 7 1278 312 306 61 27 chr5 90841408 90841556 -61695703 + RLTR40 LTR ERVK 50 202 -615 7 1278 2579 259 30 9 chr5 90842383 90843060 -61694199 - Lx6 LINE L1 -4 7456 6766 7 1278 481 241 9 9 chr5 90843191 90843304 -61693955 - PB1D7 SINE Alu -7 113 1 7 1278 277 317 39 11 chr5 90843400 90843516 -61693743 + MIRb SINE MIR 47 162 -46 7 1278 24 0 0 0 chr5 90844596 90844620 -61692639 + AT_rich Low_complexity Low_complexity 1 24 0 8 1278 207 122 0 47 chr5 90844899 90844942 -61692317 + GA-rich Low_complexity Low_complexity 1 41 0 8 1278 228 135 0 0 chr5 90845868 90845905 -61691354 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1278 334 129 0 0 chr5 90845905 90845967 -61691292 - Lx3_Mus LINE L1 -1135 5874 5813 8 1278 6812 88 28 45 chr5 90845974 90847569 -61689690 - L1_Mus3 LINE L1 0 6638 5066 8 1278 618 197 21 7 chr5 90847695 90847710 -61689549 + L1_Rod LINE L1 5676 5692 -155 8 1278 1713 47 0 9 chr5 90847710 90847927 -61689332 - L1Md_F2 LINE L1 -12 6570 6356 8 1278 2792 53 3 0 chr5 90847927 90848288 -61688971 + L1Md_F2 LINE L1 5729 6090 -492 8 1278 668 306 48 10 chr5 90848467 90848675 -61688584 - ID_B1 SINE B4 -3 221 6 8 1278 1189 68 0 0 chr5 90848805 90848951 -61688308 - B1_Mm SINE Alu 0 147 2 8 1278 240 309 84 113 chr5 90849000 90849053 -61688206 + LTR81B LTR ERV1? 173 233 -1160 8 1278 198 0 0 0 chr5 90849053 90849075 -61688184 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1278 240 309 84 113 chr5 90849075 90849163 -61688096 + LTR81B LTR ERV1? 234 310 -1083 8 1278 198 0 0 0 chr5 90850471 90850493 -61686766 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1278 406 348 0 80 chr5 90850499 90850649 -61686610 - RSINE1 SINE B4 -25 140 3 8 1278 369 0 0 0 chr5 90850738 90850779 -61686480 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1278 225 184 26 0 chr5 90850780 90850818 -61686441 + PB1 SINE Alu 22 60 -67 8 1278 241 353 114 33 chr5 90850933 90851144 -61686115 + MLT1C LTR MaLR 240 467 0 8 1278 375 359 115 17 chr5 90851227 90851462 -61685797 + HAL1 LINE L1 298 555 -1952 8 1278 185 83 28 0 chr5 90851468 90851504 -61685755 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 8 1278 494 324 37 0 chr5 90851504 90851640 -61685619 - B1_Mur2 SINE Alu -6 143 3 8 1278 630 163 27 13 chr5 90851967 90852116 -61685143 + (TATG)n Simple_repeat Simple_repeat 2 152 0 8 1278 675 287 29 126 chr5 90852657 90853031 -61684228 - Lx9 LINE L1 -427 7217 6880 8 1278 782 194 116 126 chr5 90854373 90854650 -61682609 + B4 SINE B4 1 274 -18 8 1278 246 219 59 0 chr5 90855706 90855825 -61681434 + CT-rich Low_complexity Low_complexity 1 126 0 8 1278 355 229 14 0 chr5 90856146 90856216 -61681043 - B1_Mur1 SINE Alu -1 148 78 8 1278 542 191 36 0 chr5 90856282 90856392 -61680867 - Lx7 LINE L1 -348 7348 7235 8 1278 788 241 157 68 chr5 90856638 90856926 -61680333 + Lx7 LINE L1 6888 7210 -486 8 1278 1049 114 0 12 chr5 90856926 90857095 -61680164 + (GAAAA)n Simple_repeat Simple_repeat 4 170 0 8 1278 788 241 157 68 chr5 90857095 90857220 -61680039 + Lx7 LINE L1 7211 7338 -358 8 1278 4945 36 0 3 chr5 90857249 90857835 -61679424 - L1Md_F2 LINE L1 0 6582 5999 8 1278 220 287 0 31 chr5 90857837 90857934 -61679325 + (TTTG)n Simple_repeat Simple_repeat 2 95 0 8 1278 283 225 21 79 chr5 90857940 90858080 -61679179 + Lx7 LINE L1 7565 7696 0 8 1278 222 105 0 0 chr5 90858714 90858752 -61678507 + (TCC)n Simple_repeat Simple_repeat 2 39 0 8 1278 260 250 0 62 chr5 90858780 90858844 -61678415 - B1_Mus1 SINE Alu -84 64 5 8 1278 810 176 7 26 chr5 90859429 90859581 -61677678 + B1_Mur4 SINE Alu 2 150 0 8 1278 516 277 0 45 chr5 90859627 90859782 -61677477 + B1_Mur1 SINE Alu 2 149 0 8 1278 205 102 40 20 chr5 90860476 90860526 -61676733 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 8 1278 1154 55 0 7 chr5 90860526 90860672 -61676587 - B1_Mus2 SINE Alu -1 146 2 8 1278 915 207 58 0 chr5 90861727 90861915 -61675344 - B3 SINE B2 -17 199 1 8 1278 300 318 0 0 chr5 90861951 90862017 -61675242 - ID4 SINE ID -10 73 8 8 1278 359 356 64 45 chr5 90862723 90862961 -61674298 + MIR SINE MIR 8 242 -26 8 1278 585 216 0 0 chr5 90863219 90863353 -61673906 + (TA)n Simple_repeat Simple_repeat 2 135 0 8 1278 400 226 31 29 chr5 90864889 90865014 -61672245 - PB1D10 SINE Alu -17 132 2 8 1278 716 281 67 62 chr5 90865014 90865401 -61671858 - L1MC1 LINE L1 -205 6128 5740 8 1278 413 303 46 0 chr5 90865405 90865514 -61671745 + PB1D7 SINE Alu 6 119 -1 8 1278 233 250 75 38 chr5 90865650 90865783 -61671476 - L1MC1 LINE L1 -917 5416 5279 8 1278 656 207 33 0 chr5 90865808 90865929 -61671330 - B1_Mur2 SINE Alu -2 147 23 8 1278 333 278 22 184 chr5 90865929 90865993 -61671266 - ID_B1 SINE B4 -2 222 68 8 1278 1305 284 65 48 chr5 90866015 90866291 -61670968 - L1MC1 LINE L1 -922 5224 4953 8 1278 1151 112 0 6 chr5 90866291 90866471 -61670788 + (TTC)n Simple_repeat Simple_repeat 1 179 0 8 1278 1305 284 65 48 chr5 90866471 90866486 -61670773 - L1MC1 LINE L1 -1194 4952 4946 8 1278 1051 124 6 6 chr5 90866486 90866664 -61670595 + (TTC)n Simple_repeat Simple_repeat 1 178 0 8 1278 1305 284 65 48 chr5 90866664 90867144 -61670115 - L1MC1 LINE L1 -1201 4945 4439 8 1278 469 346 25 14 chr5 90867168 90867444 -61669815 + Lx9 LINE L1 7069 7347 -297 8 1278 687 255 94 17 chr5 90867506 90867805 -61669454 - L1MC1 LINE L1 -1719 4427 4106 8 1278 1144 22 0 28 chr5 90868641 90868782 -61668477 + B1_Mus2 SINE Alu 1 137 -10 8 1278 281 47 23 0 chr5 90868782 90868825 -61668434 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1278 189 74 0 0 chr5 90868897 90868924 -61668335 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1278 292 424 14 37 chr5 90869840 90870058 -61667201 + L2 LINE L2 2526 2738 -681 8 1278 317 271 0 31 chr5 90870784 90870895 -61666364 + B4A SINE B4 5 110 -55 8 1278 215 271 14 14 chr5 90870997 90871068 -61666191 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 8 1278 639 241 28 28 chr5 90871844 90871989 -61665270 - RSINE1 SINE B4 -12 153 9 8 1278 22 0 0 0 chr5 90872215 90872237 -61665022 + AT_rich Low_complexity Low_complexity 1 22 0 8 1278 644 243 88 0 chr5 90872237 90872418 -61664841 - B3A SINE B2 0 198 2 8 1278 606 255 89 12 chr5 90872760 90873025 -61664234 - L1MA4 LINE L1 -246 6054 5777 8 1278 795 169 17 0 chr5 90873062 90873234 -61664025 + CT-rich Low_complexity Low_complexity 2 176 0 8 1278 350 191 0 14 chr5 90873500 90873569 -61663690 - ID4 SINE ID -14 69 2 8 1278 611 264 118 34 chr5 90874783 90875139 -61662120 + Lx8 LINE L1 6995 7380 -93 8 1278 414 0 0 0 chr5 90876621 90876667 -61660592 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1278 351 303 64 9 chr5 90877380 90877490 -61659769 - PB1D10 SINE Alu 0 117 2 8 1278 379 305 53 38 chr5 90877696 90877829 -61659430 - MER115 DNA Tip100 -449 244 110 8 1278 28 29 0 0 chr5 90879592 90879627 -61657632 + AT_rich Low_complexity Low_complexity 1 35 0 8 1278 872 175 0 7 chr5 90880098 90880242 -61657017 - B1_Mus1 SINE Alu -5 143 1 8 1278 241 132 0 0 chr5 90881180 90881218 -61656041 - ID_B1 SINE B4 -5 219 182 8 1278 21 0 0 0 chr5 90881749 90881770 -61655489 + AT_rich Low_complexity Low_complexity 1 21 0 8 1278 843 184 0 0 chr5 90882768 90882978 -61654281 + (CA)n Simple_repeat Simple_repeat 1 210 0 8 1278 918 298 161 30 chr5 90883537 90884282 -61652977 + L1MA4 LINE L1 4000 4864 -1279 8 1278 186 43 0 0 chr5 90884282 90884305 -61652954 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1278 850 298 161 30 chr5 90884305 90884443 -61652816 + L1MA4 LINE L1 4865 5022 -1121 8 1278 236 283 61 0 chr5 90884457 90884556 -61652703 + L1P5 LINE L1 5486 5590 -566 8 1278 440 278 24 14 chr5 90884588 90884816 -61652443 + L1MA4 LINE L1 5712 5936 -232 8 1278 405 39 0 0 chr5 90885245 90885296 -61651963 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1278 282 276 71 71 chr5 90885432 90885545 -61651714 - PB1D10 SINE Alu -2 115 3 8 1278 327 243 0 14 chr5 90886209 90886280 -61650979 + ID4 SINE ID 1 70 -13 8 1278 1190 43 0 0 chr5 90887119 90887260 -61649999 - B1_Mm SINE Alu -6 141 1 8 1278 423 118 0 0 chr5 90887566 90887642 -61649617 + (TG)n Simple_repeat Simple_repeat 2 77 0 8 1278 1204 38 13 0 chr5 90888657 90888815 -61648444 + (TCTA)n Simple_repeat Simple_repeat 3 162 0 8 1278 392 158 13 0 chr5 90889031 90889107 -61648152 + CT-rich Low_complexity Low_complexity 3 79 0 8 1278 204 179 0 0 chr5 90890138 90890177 -61647082 + (TTA)n Simple_repeat Simple_repeat 2 40 0 8 1278 21 36 0 0 chr5 90890263 90890291 -61646968 + AT_rich Low_complexity Low_complexity 1 28 0 8 1278 585 310 35 0 chr5 90890900 90891097 -61646162 + MER3 DNA MER1_type 1 204 -5 8 1278 1980 209 66 22 chr5 90891922 90892422 -61644837 + Lx9 LINE L1 7085 7606 -38 8 1278 21 36 0 0 chr5 90892789 90892817 -61644442 + AT_rich Low_complexity Low_complexity 1 28 0 8 1278 201 196 0 0 chr5 90893478 90893524 -61643735 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1278 528 45 0 0 chr5 90893619 90893686 -61643573 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 1278 315 0 0 0 chr5 90896633 90896668 -61640591 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1278 23 33 0 0 chr5 90897873 90897903 -61639356 + AT_rich Low_complexity Low_complexity 1 30 0 8 1278 270 0 0 0 chr5 90898287 90898317 -61638942 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 8 1278 237 98 0 0 chr5 90899109 90899150 -61638109 + (T)n Simple_repeat Simple_repeat 1 41 0 8 1278 8079 8 0 6 chr5 90902052 90902948 -61634311 + L1Md_A LINE L1 5727 6582 0 8 1278 495 0 0 0 chr5 90906824 90906879 -61630380 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1278 414 261 35 35 chr5 90906913 90907056 -61630203 - L1MC4a LINE L1 -490 7505 7363 8 1278 994 290 48 65 chr5 90907104 90907686 -61629573 - L1MC4a LINE L1 -1221 6821 6260 8 1278 548 413 60 3 chr5 90907750 90908085 -61629174 + FordPrefect DNA Tip100 494 847 -836 8 1278 489 309 61 44 chr5 90908258 90908553 -61628706 + FordPrefect DNA Tip100 1131 1430 -253 8 1278 1645 262 96 12 chr5 90909313 90909989 -61627270 + Lx6 LINE L1 6212 7430 -30 8 1278 338 327 36 9 chr5 90910450 90910561 -61626698 + MLT1A1 LTR MaLR 1 114 -294 8 1278 6822 154 52 15 chr5 90910567 90912381 -61624878 - Lx2B LINE L1 0 7000 5105 8 1278 551 240 3 0 chr5 90912412 90912529 -61624730 - B1F1 SINE Alu 0 120 1 8 1278 378 0 0 0 chr5 90914418 90914460 -61622799 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1278 224 365 64 11 chr5 90914590 90914765 -61622494 - MIRb SINE MIR -53 215 29 8 1278 8141 30 1 0 chr5 90915459 90916421 -61620838 - L1Md_F2 LINE L1 0 6582 5624 9 1278 319 282 26 52 chr5 90916570 90916686 -61620573 + RSINE1 SINE B4 23 135 -30 9 1278 216 308 15 15 chr5 90916694 90916760 -61620499 - ID4_ SINE ID -3 80 15 9 1278 204 360 73 0 chr5 90917157 90917293 -61619966 - MIR SINE MIR -6 256 111 9 1278 203 194 0 0 chr5 90917815 90917851 -61619408 + (TA)n Simple_repeat Simple_repeat 1 36 0 9 1278 271 288 14 0 chr5 90917999 90918072 -61619187 + PB1D10 SINE Alu 6 79 -38 9 1278 555 90 0 0 chr5 90918271 90918349 -61618910 + (GA)n Simple_repeat Simple_repeat 2 79 0 9 1278 1146 201 0 5 chr5 90918649 90918849 -61618410 + B3 SINE B2 12 210 -6 9 1278 23 0 0 0 chr5 90918862 90918885 -61618374 + AT_rich Low_complexity Low_complexity 1 23 0 9 1278 196 344 53 69 chr5 90918888 90919019 -61618240 - MER5B DNA MER1_type -30 148 20 9 1278 1309 41 0 0 chr5 90919986 90920133 -61617126 - B1_Mus2 SINE Alu 0 147 1 9 1278 186 329 133 61 chr5 90920484 90920649 -61616610 + MIR3 SINE MIR 20 196 -12 9 1278 348 211 33 66 chr5 90922308 90922491 -61614768 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 9 1278 1518 296 143 38 chr5 90922926 90923686 -61613573 - Lx8 LINE L1 -178 7295 6456 9 1278 1484 56 15 20 chr5 90923907 90924106 -61613153 + L1_Mus1 LINE L1 6370 6567 0 9 1278 218 116 0 65 chr5 90924116 90924162 -61613097 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 9 1278 489 277 15 23 chr5 90924174 90924307 -61612952 + B1_Mus2 SINE Alu 4 135 -12 9 1278 21 57 0 0 chr5 90924537 90924572 -61612687 + AT_rich Low_complexity Low_complexity 1 35 0 9 1278 469 320 16 0 chr5 90925616 90925741 -61611518 - ID_B1 SINE B4 -2 222 96 9 1278 210 118 0 0 chr5 90926950 90926984 -61610275 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 9 1278 342 303 50 3 chr5 90928211 90928329 -61608930 - PB1D10 SINE Alu -25 125 4 9 1278 236 87 65 0 chr5 90930368 90930414 -61606845 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 9 1278 276 307 70 35 chr5 90930956 90931098 -61606161 + RSINE1 SINE B4 4 150 -15 9 1278 26 0 0 0 chr5 90931116 90931142 -61606117 + AT_rich Low_complexity Low_complexity 1 26 0 9 1278 438 213 114 10 chr5 90932247 90932388 -61604871 - L1MA4A LINE L1 -183 5973 5788 9 1278 404 265 28 49 chr5 90932813 90932956 -61604303 + RSINE1 SINE B4 9 148 -17 9 1278 597 310 29 12 chr5 90934949 90935119 -61602140 + B3A SINE B2 1 173 -25 9 1278 180 0 0 0 chr5 90937057 90937077 -61600182 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 9 1278 5022 166 53 24 chr5 90937934 90938509 -61598750 - Lx5 LINE L1 0 7050 6449 9 1278 834 64 0 0 chr5 90938509 90938618 -61598641 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 9 1278 1168 91 11 0 chr5 90938618 90938794 -61598465 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 9 1278 5022 166 53 24 chr5 90938794 90939099 -61598160 - Lx5 LINE L1 -602 6448 6144 9 1278 514 340 93 54 chr5 90939844 90940379 -61596880 + L1ME1 LINE L1 4580 5135 -1011 9 1278 870 297 120 35 chr5 90940684 90941360 -61595899 + L1ME1 LINE L1 5424 6319 -15 9 1278 323 259 42 59 chr5 90941750 90941869 -61595390 - MTEa LTR MaLR -23 356 240 9 1278 2621 249 67 20 chr5 90942147 90942877 -61594382 - Lx7 LINE L1 -288 7408 6645 9 1278 432 0 0 0 chr5 90942912 90942960 -61594299 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1278 228 302 0 0 chr5 90942963 90943016 -61594243 - MTEa LTR MaLR -297 73 21 9 1278 362 374 22 44 chr5 90943074 90943348 -61593911 + L1M2 LINE L1 1429 1696 -5083 9 1278 4550 119 13 100 chr5 90943353 90944181 -61593078 - RMER6A LTR ERVK 0 756 1 9 1278 871 246 40 5 chr5 90944330 90944666 -61592593 + L1M2 LINE L1 2756 3106 -3739 9 1278 228 305 146 0 chr5 90945250 90945332 -61591927 + L1M2 LINE L1 3280 3373 -3472 9 1278 266 309 10 30 chr5 90945614 90945714 -61591545 + RMER5 LTR ERV1 220 317 -217 9 1278 222 149 21 0 chr5 90945743 90945790 -61591469 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 9 1278 605 275 24 0 chr5 90945801 90945968 -61591291 + RMER5 LTR ERV1 351 521 -13 9 1278 1131 94 0 0 chr5 90945979 90946159 -61591100 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 9 1278 1228 48 0 0 chr5 90946255 90946400 -61590859 + B1_Mm SINE Alu 3 147 0 9 1278 204 40 0 0 chr5 90946462 90946487 -61590772 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1278 342 194 39 106 chr5 90946495 90946516 -61590743 - PB1D9 SINE Alu -23 97 81 9 1278 450 0 0 0 chr5 90946516 90946566 -61590693 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1278 342 194 39 106 chr5 90946566 90946648 -61590611 - PB1D9 SINE Alu -40 80 1 9 1278 625 330 56 23 chr5 90946658 90947052 -61590207 + L1M2 LINE L1 4333 4739 -2106 9 1278 630 300 100 8 chr5 90947346 90947402 -61589857 - B4 SINE B4 -9 283 226 9 1278 480 35 0 0 chr5 90947402 90947460 -61589799 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1278 630 300 100 8 chr5 90947460 90947662 -61589597 - B4 SINE B4 -67 225 1 9 1278 286 222 42 0 chr5 90948407 90948479 -61588780 + (CATA)n Simple_repeat Simple_repeat 4 78 0 9 1278 841 137 115 23 chr5 90948749 90948966 -61588293 + Lx9 LINE L1 7406 7642 -2 9 1278 1056 109 17 0 chr5 90949623 90949798 -61587461 + (TTC)n Simple_repeat Simple_repeat 3 180 0 9 1278 1389 62 0 0 chr5 90949819 90950159 -61587100 + (TTC)n Simple_repeat Simple_repeat 1 340 0 9 1278 192 77 0 0 chr5 90950748 90950774 -61586485 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1278 443 286 15 0 chr5 90951407 90951540 -61585719 - B3A SINE B2 -61 137 3 9 1278 203 184 0 0 chr5 90951959 90951997 -61585262 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 9 1278 430 213 45 45 chr5 90952312 90952445 -61584814 - RLTR42-int LTR ERVK -4162 1360 1228 9 1278 220 255 32 11 chr5 90954634 90954729 -61582530 + T-rich Low_complexity Low_complexity 5 101 0 9 1278 829 211 42 36 chr5 90954995 90955187 -61582072 + URR1B DNA MER1_type 1 193 -32 9 1278 278 290 151 18 chr5 90955571 90955796 -61581463 - L1MA5 LINE L1 0 6300 6046 9 1278 480 93 0 0 chr5 90956005 90956080 -61581179 + (TATG)n Simple_repeat Simple_repeat 2 76 0 9 1278 828 245 35 39 chr5 90956082 90956366 -61580893 - L1MA8 LINE L1 -35 6256 5974 9 1278 378 0 0 0 chr5 90957592 90957634 -61579625 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1278 568 239 19 31 chr5 90957634 90957794 -61579465 - Lx7 LINE L1 -401 7295 7138 9 1278 1978 296 26 109 chr5 90957827 90957934 -61579325 - Lx6 LINE L1 -457 7003 6905 9 1278 3756 5 0 0 chr5 90957934 90958345 -61578914 - L1Md_T LINE L1 0 6582 6172 9 1278 1978 296 26 109 chr5 90958345 90958660 -61578599 - Lx6 LINE L1 -556 6904 6613 9 1278 1161 48 7 0 chr5 90958660 90958806 -61578453 + B1_Mus1 SINE Alu 2 148 0 9 1278 1978 300 31 105 chr5 90958806 90959388 -61577871 - Lx6 LINE L1 -887 6757 6170 9 1278 353 299 49 0 chr5 90959392 90959536 -61577723 - Lx8 LINE L1 -1284 6189 6039 9 1278 654 265 36 25 chr5 90959616 90959817 -61577442 - B3 SINE B2 -8 187 1 9 1278 380 259 0 0 chr5 90960002 90960087 -61577172 + RSINE1 SINE B4 7 91 -74 9 1278 300 368 31 5 chr5 90960899 90961090 -61576169 - MIRb SINE MIR -1 267 72 9 1278 490 153 0 0 chr5 90961541 90961613 -61575646 - tRNA-Lys-AAG tRNA tRNA -3 73 2 9 1278 684 115 0 0 chr5 90961712 90961816 -61575443 + (CA)n Simple_repeat Simple_repeat 1 104 0 9 159 9644 97 52 5 chr5 90961954 90964137 -61573122 - L1_Mus3 LINE L1 0 6638 4445 9 1279 39109 56 1 4 chr5 90964144 90971888 -61565371 - L1Md_T LINE L1 0 6585 1 9 1279 275 335 176 8 chr5 90972084 90972328 -61564931 - L1M2 LINE L1 -4366 2483 2199 9 1279 516 242 116 18 chr5 90973068 90973232 -61564027 - B3A SINE B2 -16 182 3 9 1279 221 216 45 11 chr5 90974613 90974702 -61562557 + (TATAA)n Simple_repeat Simple_repeat 1 92 0 9 1279 368 285 112 7 chr5 90974836 90974988 -61562271 - MLT1D LTR MaLR 0 505 338 9 1279 315 0 0 0 chr5 90975278 90975313 -61561946 + (T)n Simple_repeat Simple_repeat 1 35 0 9 1279 4155 61 0 41 chr5 90975461 90976021 -61561238 + L1Md_F2 LINE L1 6041 6577 -5 9 1279 21 36 0 0 chr5 90976103 90976131 -61561128 + AT_rich Low_complexity Low_complexity 1 28 0 9 1279 21 0 0 0 chr5 90976286 90976307 -61560952 + AT_rich Low_complexity Low_complexity 1 21 0 9 1279 767 261 126 11 chr5 90977982 90978268 -61558991 - Lx9 LINE L1 -78 7566 7248 9 1279 469 244 33 8 chr5 90978286 90978406 -61558853 - B1F2 SINE Alu -9 140 18 9 1279 387 0 0 0 chr5 90979087 90979130 -61558129 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1279 26 0 0 0 chr5 90979689 90979715 -61557544 + AT_rich Low_complexity Low_complexity 1 26 0 9 1279 372 71 0 0 chr5 90979715 90979771 -61557488 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1279 633 218 0 16 chr5 90979800 90979926 -61557333 - RSINE1 SINE B4 -40 125 2 9 1279 180 0 0 0 chr5 90981196 90981216 -61556043 + (CA)n Simple_repeat Simple_repeat 1 20 0 9 1279 213 121 0 0 chr5 90981437 90981470 -61555789 + (TC)n Simple_repeat Simple_repeat 2 34 0 9 1279 532 273 0 0 chr5 90981942 90982074 -61555185 + B1F1 SINE Alu 11 142 -7 9 1279 22 35 0 0 chr5 90982229 90982258 -61555001 + AT_rich Low_complexity Low_complexity 1 29 0 9 1279 599 242 18 54 chr5 90982621 90982648 -61554611 + B4 SINE B4 15 37 -255 9 1279 1372 242 68 15 chr5 90982648 90983046 -61554213 - MTD LTR MaLR 0 419 1 9 1279 599 242 18 54 chr5 90983046 90983184 -61554075 + B4 SINE B4 38 174 -118 9 1279 1089 74 0 51 chr5 90983249 90983405 -61553854 - B1_Mus1 SINE Alu 0 148 1 9 1279 363 256 0 35 chr5 90983412 90983497 -61553762 + B4 SINE B4 207 288 -4 9 1279 375 78 0 0 chr5 90983529 90983580 -61553679 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1279 21 0 0 0 chr5 90983613 90983634 -61553625 + AT_rich Low_complexity Low_complexity 1 21 0 9 1279 265 318 86 37 chr5 90983801 90983964 -61553295 - MIR SINE MIR -32 230 60 9 1279 507 198 130 16 chr5 90984036 90984159 -61553100 + RSINE1 SINE B4 1 137 -28 9 1279 510 86 0 0 chr5 90984774 90984855 -61552404 + (TC)n Simple_repeat Simple_repeat 1 81 0 9 1279 231 103 0 0 chr5 90984855 90984894 -61552365 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1279 325 189 59 59 chr5 90985629 90985730 -61551529 + PB1D10 SINE Alu 5 105 -12 9 1279 641 35 0 0 chr5 90986195 90986280 -61550979 - L1_Mus3 LINE L1 -5 6633 6549 9 1279 2890 71 3 3 chr5 90986280 90986649 -61550610 + L1_Mus4 LINE L1 5791 6159 -477 1 1279 223 296 0 0 chr5 90986770 90986824 -61550435 + PB1D10 SINE Alu 1 54 -63 1 1279 1186 214 41 47 chr5 90987200 90987543 -61549716 - Lx7 LINE L1 0 7696 7356 1 1279 24 32 0 0 chr5 90987558 90987589 -61549670 + AT_rich Low_complexity Low_complexity 1 31 0 1 1279 651 250 0 0 chr5 90987604 90987740 -61549519 - Lx7 LINE L1 -356 7340 7205 1 1279 523 236 23 16 chr5 90990774 90990903 -61546356 - B4A SINE B4 -1 291 162 1 1279 583 319 58 0 chr5 90990949 90991140 -61546119 - B4A SINE B4 -90 202 1 1 1279 905 128 0 6 chr5 90991357 90991538 -61545721 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1279 506 202 17 0 chr5 90991819 90991938 -61545321 - Lx9 LINE L1 -2 7642 7522 1 1279 321 47 0 0 chr5 90991938 90991981 -61545278 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1279 896 186 11 11 chr5 90991985 90992159 -61545100 - Lx9 LINE L1 -189 7455 7282 1 1279 679 285 56 10 chr5 90992191 90992386 -61544873 - B4 SINE B4 -84 208 5 1 1279 784 260 206 29 chr5 90992632 90992977 -61544282 - MLT1A0 LTR MaLR 0 408 3 1 1279 423 0 0 0 chr5 90993843 90993890 -61543369 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1279 610 237 8 0 chr5 90993890 90994008 -61543251 - RSINE1 SINE B4 -45 120 2 1 1279 582 284 32 0 chr5 90994717 90994872 -61542387 + RSINE1 SINE B4 4 163 -2 1 1279 585 332 112 0 chr5 90994940 90995190 -61542069 + B4A SINE B4 14 291 -1 1 1279 26 50 0 0 chr5 90995232 90995272 -61541987 + AT_rich Low_complexity Low_complexity 1 40 0 1 1279 543 56 0 0 chr5 90997266 90997337 -61539922 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1279 247 231 81 122 chr5 90997337 90997460 -61539799 - RSINE1 SINE B4 -46 119 2 1 1279 369 288 26 46 chr5 90997505 90997658 -61539601 + MER76 LTR ERVL 542 691 0 1 1279 244 333 138 8 chr5 90997772 90997902 -61539357 - MLT1J1 LTR MaLR -277 167 21 1 1279 285 311 33 8 chr5 90998637 90998757 -61538502 + MER5A1 DNA MER1_type 1 123 -43 1 1279 448 355 73 29 chr5 90998820 90999308 -61537951 - MLT1G LTR MaLR -2 553 41 1 1279 405 127 0 0 chr5 91000905 91000968 -61536291 - ORR1A4 LTR MaLR 0 329 267 1 1279 502 267 0 16 chr5 91000961 91001083 -61536176 + ID_B1 SINE B4 78 197 -27 2 1279 267 31 0 0 chr5 91001090 91001122 -61536137 + (ATG)n Simple_repeat Simple_repeat 1 32 0 3 1279 236 185 0 0 chr5 91001587 91001641 -61535618 + Lx9 LINE L1 7589 7642 -2 4 1279 1291 58 93 0 chr5 91002426 91002598 -61534661 - B2_Mm2 SINE B2 -7 188 1 5 1279 428 317 76 80 chr5 91002620 91002870 -61534389 + B4A SINE B4 27 275 -17 6 1279 216 111 0 0 chr5 91002897 91002933 -61534326 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1279 1007 159 74 10 chr5 91003197 91003400 -61533859 - B3 SINE B2 0 216 1 8 1279 1065 295 127 60 chr5 91003536 91004102 -61533157 - MER82 DNA MER2_type 0 653 50 9 1279 241 279 0 14 chr5 91004526 91004595 -61532664 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 1 1279 219 288 70 2 chr5 91005029 91005173 -61532086 - MIR SINE MIR -44 224 62 1 1279 240 240 20 10 chr5 91005201 91005302 -61531957 + C-rich Low_complexity Low_complexity 4 105 0 1 1279 333 47 0 0 chr5 91006676 91006719 -61530540 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1279 666 240 70 11 chr5 91007886 91008071 -61529188 - B3A SINE B2 -2 196 1 1 1279 21 36 0 0 chr5 91008194 91008222 -61529037 + AT_rich Low_complexity Low_complexity 1 28 0 1 1279 369 0 0 0 chr5 91008511 91008552 -61528707 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1279 2567 68 34 11 chr5 91009240 91009598 -61527661 + L1Md_F2 LINE L1 6217 6582 0 1 1279 1311 156 201 24 chr5 91009728 91010056 -61527203 + MTC LTR MaLR 1 386 -35 1 1279 186 433 13 0 chr5 91010147 91010297 -61526962 - MIRc SINE MIR -68 200 49 1 1279 336 48 0 0 chr5 91010543 91010585 -61526674 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1279 228 229 30 50 chr5 91010585 91010686 -61526573 - Lx9 LINE L1 -127 7517 7419 2 1279 260 284 163 7 chr5 91011716 91011851 -61525408 - MER5A DNA MER1_type -2 187 32 2 1279 626 276 144 89 chr5 91012271 91012832 -61524427 - MER67C LTR ERV1 -81 630 39 2 1279 37 23 0 0 chr5 91014259 91014303 -61522956 + AT_rich Low_complexity Low_complexity 1 44 0 2 1279 527 324 11 40 chr5 91014479 91014656 -61522603 + B3A SINE B2 1 172 -26 2 1279 719 232 93 0 chr5 91014934 91015128 -61522131 - ID_B1 SINE B4 -3 221 10 2 1279 189 0 0 0 chr5 91015387 91015408 -61521851 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 1279 2602 148 86 10 chr5 91015530 91016021 -61521238 + RLTR11A LTR ERVK 1 528 0 2 1279 267 216 0 0 chr5 91016053 91016104 -61521155 + RLTR11A LTR ERVK 478 528 0 2 1279 859 299 27 73 chr5 91016150 91016267 -61520992 - RLTR11B LTR ERVK -172 356 242 3 1279 607 46 11 11 chr5 91016267 91016355 -61520904 + (TCC)n Simple_repeat Simple_repeat 2 89 0 3 1279 859 227 28 76 chr5 91016355 91016610 -61520649 - RLTR11B LTR ERVK -211 242 2 3 1279 281 168 97 24 chr5 91016610 91016775 -61520484 + (TA)n Simple_repeat Simple_repeat 2 178 0 3 1279 226 263 13 26 chr5 91017145 91017223 -61520036 - MIRb SINE MIR -67 201 125 3 1279 312 204 91 41 chr5 91017325 91017452 -61519807 + B1F SINE Alu 1 141 -8 3 1279 435 229 0 0 chr5 91018489 91018607 -61518652 + (CCA)n Simple_repeat Simple_repeat 1 118 0 3 1279 389 304 63 26 chr5 91018747 91018936 -61518323 + B4A SINE B4 2 197 -95 3 1279 333 0 0 0 chr5 91019051 91019088 -61518171 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1279 1264 47 0 0 chr5 91019358 91019506 -61517753 + B1_Mus1 SINE Alu 1 148 0 3 1279 289 207 0 0 chr5 91019526 91019584 -61517675 - ID_B1 SINE B4 -81 143 86 3 1279 331 96 0 0 chr5 91019536 91019588 -61517671 - B1_Mur4 SINE Alu -97 53 2 4 1279 696 236 14 0 chr5 91020887 91021031 -61516228 - B1_Mur1 SINE Alu 0 149 4 4 1279 414 264 0 0 chr5 91021031 91021118 -61516141 - B1_Mur3 SINE Alu -61 88 2 4 1279 29 0 0 0 chr5 91022328 91022357 -61514902 + AT_rich Low_complexity Low_complexity 1 29 0 4 1279 316 91 0 0 chr5 91022528 91022572 -61514687 + HAL1-3A_ME LINE L1 1969 2012 -846 4 1279 183 162 0 0 chr5 91022611 91022648 -61514611 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1279 356 252 126 28 chr5 91023341 91023484 -61513775 - MER5A DNA MER1_type -9 180 24 4 1279 477 0 0 0 chr5 91024986 91025039 -61512220 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1279 727 196 247 6 chr5 91025730 91025904 -61511355 + B3 SINE B2 1 216 0 4 1279 210 71 0 0 chr5 91026142 91026170 -61511089 + (TATG)n Simple_repeat Simple_repeat 4 31 0 4 1279 32 57 0 0 chr5 91027058 91027111 -61510148 + AT_rich Low_complexity Low_complexity 1 53 0 5 1279 528 318 46 41 chr5 91027324 91027488 -61509771 + B3A SINE B2 1 173 -25 5 1279 480 35 0 0 chr5 91027488 91027546 -61509713 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1279 528 318 46 41 chr5 91027546 91027578 -61509681 + B3A SINE B2 174 198 0 5 1279 525 288 17 50 chr5 91027868 91028047 -61509212 - B4A SINE B4 -118 174 2 5 1279 398 280 106 0 chr5 91028364 91028553 -61508706 + MER2 DNA MER2_type 115 323 -22 5 1279 269 351 101 7 chr5 91029447 91029596 -61507663 - MLT1F2 LTR MaLR -1 559 397 5 1279 21 36 0 0 chr5 91030439 91030467 -61506792 + AT_rich Low_complexity Low_complexity 1 28 0 5 1279 357 227 75 8 chr5 91030984 91031104 -61506155 + LTR41B LTR ERVL 628 755 -3 5 1279 406 324 22 0 chr5 91031252 91031388 -61505871 - B1F SINE Alu -8 141 3 5 1279 739 276 64 0 chr5 91032130 91032333 -61504926 - B3 SINE B2 0 216 1 5 1279 1016 289 72 62 chr5 91033533 91034034 -61503225 - MER44B DNA MER2_type -8 542 37 6 1279 324 0 0 0 chr5 91034212 91034248 -61503011 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 6 1279 214 311 0 0 chr5 91036883 91036928 -61500331 + B4A SINE B4 84 128 -164 6 1279 28 0 0 0 chr5 91036977 91037005 -61500254 + AT_rich Low_complexity Low_complexity 1 28 0 6 1279 186 130 0 68 chr5 91037112 91037186 -61500073 + A-rich Low_complexity Low_complexity 4 72 0 6 1279 704 150 0 0 chr5 91037251 91037364 -61499895 + B3 SINE B2 1 113 -103 6 1279 831 259 30 26 chr5 91037392 91037626 -61499633 - Lx7 LINE L1 -376 7320 7086 6 1279 256 257 0 98 chr5 91039437 91039519 -61497740 + MIRc SINE MIR 86 159 -109 6 1279 300 171 0 0 chr5 91039562 91039644 -61497615 + CT-rich Low_complexity Low_complexity 1 82 0 6 1279 302 227 48 76 chr5 91039644 91039749 -61497510 + ORR1E LTR MaLR 176 277 -82 6 1279 392 207 58 1 chr5 91039843 91039948 -61497311 + ORR1E LTR MaLR 248 358 -12 6 1279 1266 61 0 0 chr5 91041708 91041872 -61495387 + (TG)n Simple_repeat Simple_repeat 1 164 0 7 1279 450 36 0 0 chr5 91041872 91041927 -61495332 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1279 509 267 119 99 chr5 91042185 91042531 -61494728 + ORR1E LTR MaLR 1 372 -7 7 1279 261 0 0 0 chr5 91042905 91042934 -61494325 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1279 1134 62 0 34 chr5 91042934 91043069 -61494190 + B1_Mm SINE Alu 4 137 -10 7 1279 198 0 0 0 chr5 91043069 91043091 -61494168 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 7 1279 1134 62 0 34 chr5 91043091 91043104 -61494155 + B1_Mm SINE Alu 138 147 0 7 1279 188 179 0 51 chr5 91043511 91043570 -61493689 + CT-rich Low_complexity Low_complexity 1 56 0 7 1279 183 80 0 0 chr5 91043953 91043978 -61493281 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1279 554 187 37 0 chr5 91045431 91045538 -61491721 + PB1D9 SINE Alu 9 119 -1 7 1279 531 307 79 5 chr5 91045580 91045770 -61491489 + B4A SINE B4 48 251 -41 7 1279 24 67 0 0 chr5 91046549 91046594 -61490665 + AT_rich Low_complexity Low_complexity 1 45 0 8 1279 366 332 135 24 chr5 91047448 91047740 -61489519 + L2a LINE L2 2814 3131 -295 8 1279 895 209 46 55 chr5 91047750 91047968 -61489291 + B3 SINE B2 1 216 0 8 1279 200 245 20 0 chr5 91048111 91048160 -61489099 + T-rich Low_complexity Low_complexity 4 53 0 8 1279 183 139 0 0 chr5 91048177 91048213 -61489046 + (TATG)n Simple_repeat Simple_repeat 4 39 0 8 1279 949 135 34 50 chr5 91048213 91048392 -61488867 - B2_Mm2 SINE B2 -18 177 2 8 1279 682 222 7 7 chr5 91048393 91048529 -61488730 - B1_Mur1 SINE Alu -13 136 1 8 1279 252 307 90 28 chr5 91048533 91048677 -61488582 + L2a LINE L2 3269 3421 -5 8 1279 451 176 144 86 chr5 91051743 91051881 -61485378 + B3A SINE B2 2 140 -58 8 1279 465 19 0 0 chr5 91051881 91051935 -61485324 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1279 404 176 144 86 chr5 91051935 91051970 -61485289 + B2_Mm2 SINE B2 137 185 -10 8 1279 298 184 33 0 chr5 91052860 91052966 -61484293 - B1F SINE Alu -5 144 2 8 1279 267 133 0 0 chr5 91053407 91053452 -61483807 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 1279 721 228 139 0 chr5 91054694 91054874 -61482385 + B3 SINE B2 5 209 -7 9 1279 788 235 52 97 chr5 91058413 91058701 -61478558 + RLTR11B LTR ERVK 1 275 -178 9 1279 647 213 23 40 chr5 91058755 91058931 -61478328 + RLTR11B LTR ERVK 259 431 -22 9 1279 458 145 36 0 chr5 91058953 91059036 -61478223 - B2_Mm2 SINE B2 -109 86 1 9 1279 346 121 44 0 chr5 91060039 91060130 -61477129 + (CAGA)n Simple_repeat Simple_repeat 2 96 0 9 1279 511 162 14 29 chr5 91061226 91061366 -61475893 + GA-rich Low_complexity Low_complexity 2 139 0 9 1279 1146 90 6 11 chr5 91061371 91061551 -61475708 + (GAA)n Simple_repeat Simple_repeat 1 179 0 9 1279 422 241 0 0 chr5 91065273 91065356 -61471903 - ID_B1 SINE B4 -63 161 79 9 1279 351 238 28 37 chr5 91066216 91066325 -61470934 + L1_Mur3 LINE L1 5193 5300 -580 9 1279 952 199 53 14 chr5 91066326 91066535 -61470724 - MTD LTR MaLR 0 419 203 9 1279 234 91 0 0 chr5 91066535 91066568 -61470691 + (TATG)n Simple_repeat Simple_repeat 3 35 0 1 1279 203 179 54 0 chr5 91066574 91066630 -61470629 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1279 21 57 0 0 chr5 91066632 91066667 -61470592 + AT_rich Low_complexity Low_complexity 1 35 0 1 1279 553 152 36 0 chr5 91066667 91066805 -61470454 + (TA)n Simple_repeat Simple_repeat 2 144 0 1 1279 665 187 18 49 chr5 91066807 91066970 -61470289 - MTD LTR MaLR -261 158 1 9 1279 1587 223 42 45 chr5 91066980 91067407 -61469852 + L1_Rod LINE L1 5284 5709 -138 1 1279 23 0 0 0 chr5 91067407 91067430 -61469829 + AT_rich Low_complexity Low_complexity 1 23 0 1 1279 21 0 0 0 chr5 91067791 91067812 -61469447 + AT_rich Low_complexity Low_complexity 1 21 0 1 1279 316 356 24 30 chr5 91068798 91068963 -61468296 - MIRb SINE MIR -76 192 29 1 1279 22 0 0 0 chr5 91071091 91071113 -61466146 + AT_rich Low_complexity Low_complexity 1 22 0 1 1279 899 212 44 0 chr5 91071113 91071316 -61465943 - B3 SINE B2 0 216 5 1 1279 234 0 0 0 chr5 91071435 91071461 -61465798 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1 1279 246 273 111 0 chr5 91071461 91071560 -61465699 - PB1D7 SINE Alu -10 110 1 1 1279 879 32 8 0 chr5 91071966 91072090 -61465169 + L1Md_F2 LINE L1 6457 6581 -1 1 1279 322 358 73 23 chr5 91072641 91072944 -61464315 + L2a LINE L2 3005 3322 -104 1 1279 617 219 319 0 chr5 91072956 91073232 -61464027 + ORR1D2 LTR MaLR 1 364 -6 1 1279 328 318 56 11 chr5 91074028 91074206 -61463053 + MLT1H LTR MaLR 345 530 -19 1 1279 852 39 0 0 chr5 91075266 91075370 -61461889 + (GA)n Simple_repeat Simple_repeat 1 104 0 1 1279 473 273 106 59 chr5 91076293 91076768 -61460491 - RMER20A LTR ERVK -61 566 14 1 1279 1542 184 159 14 chr5 91077311 91077663 -61459596 - MTD LTR MaLR -11 408 6 1 1279 22 0 0 0 chr5 91077764 91077786 -61459473 + AT_rich Low_complexity Low_complexity 1 22 0 1 1279 1177 264 120 19 chr5 91078271 91078565 -61458694 + L1MCa LINE L1 70 392 -6116 1 1279 279 0 0 0 chr5 91078565 91078596 -61458663 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1279 231 61 0 0 chr5 91078596 91078628 -61458631 + (CG)n Simple_repeat Simple_repeat 2 34 0 1 1279 1177 264 120 19 chr5 91078628 91078806 -61458453 + L1MCa LINE L1 393 590 -5918 1 1279 21 0 0 0 chr5 91079239 91079260 -61457999 + AT_rich Low_complexity Low_complexity 1 21 0 1 1279 225 358 52 7 chr5 91080052 91080187 -61457072 - MER5A DNA MER1_type -4 185 45 1 1279 709 170 61 81 chr5 91080353 91080448 -61456811 + URR1B DNA MER1_type 1 95 -130 1 1279 2058 146 40 27 chr5 91080448 91080850 -61456409 + RMER17C LTR ERVK 1 407 -3 1 1279 709 170 61 81 chr5 91080850 91080952 -61456307 + URR1B DNA MER1_type 96 194 -31 1 1279 498 257 11 43 chr5 91081166 91081364 -61455895 + B3 SINE B2 4 195 0 1 1279 2935 225 41 174 chr5 91082131 91083468 -61453791 + L1_Mur3 LINE L1 4408 5566 -314 1 1279 710 167 63 35 chr5 91084685 91084828 -61452431 + B1_Mur4 SINE Alu 2 148 -2 1 1279 213 39 0 0 chr5 91084829 91084855 -61452404 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 1279 269 332 59 50 chr5 91085120 91085339 -61451920 + L1ME1 LINE L1 5822 6042 -137 1 1279 1154 120 0 6 chr5 91086346 91086522 -61450737 - B2_Mm2 SINE B2 -20 175 1 1 1279 286 217 65 130 chr5 91087346 91087484 -61449775 - ID_B1 SINE B4 0 224 96 1 1279 491 283 0 9 chr5 91087624 91087738 -61449521 - PB1D9 SINE Alu -2 118 6 1 1279 439 327 115 7 chr5 91088021 91088326 -61448933 + MER90a LTR ERV1 106 443 -171 1 1279 201 121 0 0 chr5 91088326 91088359 -61448900 + (C)n Simple_repeat Simple_repeat 1 33 0 1 1279 589 235 0 51 chr5 91088838 91088995 -61448264 - RSINE1 SINE B4 0 165 17 1 1279 654 312 68 32 chr5 91089046 91089324 -61447935 - B4A SINE B4 -3 289 2 1 1279 282 340 81 34 chr5 91090652 91090801 -61446458 + MIRb SINE MIR 36 195 -73 1 1279 522 0 0 0 chr5 91092589 91092647 -61444612 + (TA)n Simple_repeat Simple_repeat 1 58 0 1 1279 2615 168 47 79 chr5 91092655 91093225 -61444034 + Lx5 LINE L1 6492 7043 -7 1 1279 25 0 0 0 chr5 91093950 91093975 -61443284 + AT_rich Low_complexity Low_complexity 1 25 0 1 1280 21 57 0 0 chr5 91096139 91096174 -61441085 + AT_rich Low_complexity Low_complexity 1 35 0 1 1280 1389 67 0 0 chr5 91096852 91097105 -61440154 + (CA)n Simple_repeat Simple_repeat 1 253 0 1 1280 1042 259 15 19 chr5 91097362 91097716 -61439543 - Lx3C LINE L1 -3 6997 6604 1 1280 235 146 0 0 chr5 91097726 91097774 -61439485 - Lx3C LINE L1 -912 6064 6017 1 1280 650 205 0 16 chr5 91097817 91097946 -61439313 - B1_Mus2 SINE Alu 0 147 21 1 1280 2642 315 75 28 chr5 91098804 91099944 -61437315 - Lx8 LINE L1 -50 7423 6230 1 1280 464 0 18 0 chr5 91099991 91100047 -61437212 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1280 378 0 0 0 chr5 91100067 91100109 -61437150 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1 1280 1080 130 0 0 chr5 91100109 91100271 -61436988 - B2_Mm2 SINE B2 -32 163 2 1 1280 282 326 85 73 chr5 91100290 91100552 -61436707 - Lx8 LINE L1 -1338 6135 5878 1 1280 1150 243 109 18 chr5 91100552 91100891 -61436368 + ORR1D2 LTR MaLR 1 370 0 1 1280 282 326 85 73 chr5 91100891 91100982 -61436277 - Lx8 LINE L1 -1596 5877 5778 1 1280 950 83 0 0 chr5 91100982 91101114 -61436145 - L1_Mus1 LINE L1 0 6567 6436 1 1280 4838 82 5 17 chr5 91101113 91101769 -61435490 - L1Md_F2 LINE L1 0 6582 5935 1 1280 30 0 0 0 chr5 91101838 91101868 -61435391 + AT_rich Low_complexity Low_complexity 1 30 0 1 1280 228 0 0 0 chr5 91101868 91101893 -61435366 - L1_Mus2 LINE L1 -645 5921 5897 1 1280 1383 264 53 31 chr5 91101974 91102462 -61434797 - Lx8 LINE L1 -122 5758 5260 1 1280 195 139 0 0 chr5 91103099 91103135 -61434124 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1280 262 310 50 11 chr5 91103333 91103460 -61433799 + MIR SINE MIR 46 179 -89 1 1280 1246 14 0 0 chr5 91104447 91104586 -61432673 + B1_Mm SINE Alu 2 140 -7 1 1280 213 39 0 0 chr5 91104590 91104616 -61432643 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1280 998 228 34 5 chr5 91105188 91105395 -61431864 - B3 SINE B2 0 216 4 1 1280 228 284 0 15 chr5 91105589 91105657 -61431602 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1280 281 324 76 35 chr5 91105658 91105802 -61431457 - B4A SINE B4 0 292 143 1 1280 350 292 21 10 chr5 91105820 91105917 -61431342 - B4A SINE B4 -194 98 1 1 1280 806 19 19 0 chr5 91106030 91106133 -61431126 + (TCTCTG)n Simple_repeat Simple_repeat 2 106 0 1 1280 488 290 27 7 chr5 91107192 91107338 -61429921 + B1F SINE Alu 1 149 0 1 1280 292 229 51 68 chr5 91108270 91108387 -61428872 - Lx8 LINE L1 0 7473 7359 1 1280 313 119 0 56 chr5 91108387 91108458 -61428801 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1280 254 296 122 0 chr5 91108553 91108651 -61428608 - Lx8 LINE L1 -249 7224 7115 1 1280 366 55 27 40 chr5 91109507 91109582 -61427677 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 1 1280 1188 150 46 23 chr5 91110660 91110878 -61426381 + URR1A DNA MER1_type 1 223 -3 1 1280 508 329 21 49 chr5 91112006 91112249 -61425010 - MER20B DNA MER1_type -21 762 527 1 1280 3839 159 111 10 chr5 91113210 91113897 -61423362 - RMER6A LTR ERVK 0 756 1 1 1280 208 231 33 25 chr5 91115306 91115426 -61421833 + CT-rich Low_complexity Low_complexity 3 123 0 1 1280 309 337 0 11 chr5 91116808 91116901 -61420358 - MIR SINE MIR -72 136 45 1 1280 296 335 52 24 chr5 91117043 91117254 -61420005 + L1ME3B LINE L1 5811 6027 -213 1 1280 361 254 0 0 chr5 91118157 91118224 -61419035 + B3A SINE B2 20 86 -112 1 1280 306 49 0 109 chr5 91119528 91119620 -61417639 + A-rich Low_complexity Low_complexity 4 85 0 1 1280 37 52 0 0 chr5 91120486 91120544 -61416715 + AT_rich Low_complexity Low_complexity 1 58 0 1 1280 180 312 52 41 chr5 91121555 91121652 -61415607 - L2a LINE L2 -25 3401 3304 1 1280 512 349 45 33 chr5 91121897 91122229 -61415030 - MER21-int LTR ERV1 -3294 897 562 1 1280 203 229 0 16 chr5 91122759 91122821 -61414438 + CT-rich Low_complexity Low_complexity 3 63 0 1 1280 354 276 89 33 chr5 91123107 91123197 -61414062 - PB1D10 SINE Alu -20 97 3 1 1280 748 170 0 113 chr5 91123991 91124150 -61413109 - B1_Mur3 SINE Alu -5 144 4 1 1280 358 234 0 157 chr5 91124018 91124165 -61413094 - MT2B LTR ERVL -323 278 155 1 1280 267 0 45 23 chr5 91124180 91124224 -61413035 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 1 1280 267 79 0 0 chr5 91124601 91124639 -61412620 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 1 1280 519 311 20 7 chr5 91124649 91124801 -61412458 - RSINE1 SINE B4 -3 162 9 1 1280 212 0 0 35 chr5 91124845 91124874 -61412385 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1280 245 352 0 14 chr5 91124876 91124948 -61412311 + ID SINE ID 3 73 -151 1 1280 2277 231 42 24 chr5 91125529 91126495 -61410764 + Lx5 LINE L1 6145 7027 -23 1 1280 189 74 0 0 chr5 91126498 91126525 -61410734 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 1280 27 62 0 0 chr5 91126530 91126578 -61410681 + AT_rich Low_complexity Low_complexity 1 48 0 1 1280 2538 215 88 104 chr5 91126875 91127650 -61409609 - RMER13A LTR ERVK -1 859 98 1 1280 447 182 23 0 chr5 91128233 91128321 -61408938 - RMER17A-int LTR ERVK -650 1078 989 1 1280 8206 64 7 7 chr5 91129713 91130816 -61406443 + L1_Mus3 LINE L1 5532 6637 -1 1 1280 213 311 134 29 chr5 91131564 91131736 -61405523 + MIR SINE MIR 31 220 -42 1 1280 205 250 0 0 chr5 91133234 91133278 -61403981 + GA-rich Low_complexity Low_complexity 3 46 0 1 1280 25 0 0 0 chr5 91133641 91133666 -61403593 + AT_rich Low_complexity Low_complexity 1 25 0 1 1280 859 279 7 6 chr5 91134710 91134928 -61402331 - B3A SINE B2 -1 215 2 1 1280 278 308 73 44 chr5 91135952 91136088 -61401171 + MER5A DNA MER1_type 36 175 -14 1 1280 636 286 19 12 chr5 91136803 91136986 -61400273 + B3A SINE B2 37 212 -4 2 1280 189 0 0 0 chr5 91137628 91137649 -61399610 + (TGG)n Simple_repeat Simple_repeat 2 22 0 2 1280 381 352 0 8 chr5 91137761 91137887 -61399372 - B4 SINE B4 -4 288 164 2 1280 199 340 37 87 chr5 91138318 91138479 -61398780 + MIRb SINE MIR 47 199 -69 2 1280 232 91 45 0 chr5 91139535 91139579 -61397680 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 1280 683 24 0 12 chr5 91139600 91139686 -61397573 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 2 1280 729 257 0 0 chr5 91139696 91139836 -61397423 - B1_Mur3 SINE Alu -9 140 1 2 1280 22 35 0 0 chr5 91139979 91140008 -61397251 + AT_rich Low_complexity Low_complexity 1 29 0 2 1280 453 19 0 0 chr5 91140009 91140063 -61397196 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1280 253 284 108 0 chr5 91140069 91140143 -61397116 - RSINE1 SINE B4 -70 95 14 2 1280 980 279 0 31 chr5 91140990 91141216 -61396043 - ID_B1 SINE B4 0 224 6 2 1280 447 68 0 0 chr5 91141626 91141685 -61395574 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 2 1280 1198 158 41 12 chr5 91141687 91141994 -61395265 - RMER17B LTR ERVK -519 439 16 2 1280 1305 151 18 5 chr5 91141997 91142217 -61395042 - RMER17C-int LTR ERVK -1 3237 3015 2 1280 321 26 0 0 chr5 91142568 91142606 -61394653 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1280 468 196 269 82 chr5 91143427 91143683 -61393576 + ORR1E LTR MaLR 52 355 -4 2 1280 513 0 0 0 chr5 91145955 91146012 -61391247 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1280 315 0 0 0 chr5 91146012 91146046 -61391213 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1280 180 97 0 0 chr5 91146159 91146190 -61391069 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1280 435 222 129 31 chr5 91146733 91146914 -61390345 - Lx8 LINE L1 -405 5898 5714 2 1280 1172 285 89 13 chr5 91147002 91147559 -61389700 + Lx8 LINE L1 5325 5973 -1671 2 1280 2006 276 173 51 chr5 91147770 91148742 -61388517 + Lx8 LINE L1 6377 7466 -7 2 1280 669 194 0 24 chr5 91148741 91148910 -61388349 + Lx7 LINE L1 7383 7547 -149 2 1280 555 56 0 0 chr5 91148922 91148993 -61388266 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 2 1280 278 62 0 40 chr5 91149515 91149565 -61387694 + (TTTTG)n Simple_repeat Simple_repeat 4 51 0 2 1280 1210 62 7 14 chr5 91149573 91149721 -61387538 - B1_Mus1 SINE Alu 0 148 2 2 1280 974 241 18 28 chr5 91149721 91149930 -61387329 - B4 SINE B4 -77 215 8 2 1280 460 306 19 52 chr5 91150731 91150886 -61386373 + RSINE1 SINE B4 3 152 -13 2 1280 241 68 45 0 chr5 91150886 91150930 -61386329 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 1280 351 60 0 0 chr5 91150931 91150981 -61386278 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1280 761 307 24 64 chr5 91151945 91152241 -61385018 + B4A SINE B4 1 284 -8 2 1280 333 131 0 0 chr5 91152259 91152320 -61384939 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1280 275 224 0 13 chr5 91152321 91152398 -61384861 + (CAGAGA)n Simple_repeat Simple_repeat 2 77 0 2 1280 528 235 15 6 chr5 91152620 91152972 -61384287 + (CA)n Simple_repeat Simple_repeat 1 355 0 2 1280 450 231 0 17 chr5 91152984 91153156 -61384103 + (CATA)n Simple_repeat Simple_repeat 1 169 0 2 1280 922 331 81 18 chr5 91153839 91154223 -61383036 - LTR16B2 LTR ERVL 0 462 55 2 1280 252 369 56 19 chr5 91154263 91154423 -61382836 - MER63A DNA AcHobo -44 166 1 2 1280 1310 307 75 22 chr5 91154588 91155394 -61381865 + L1_Mur3 LINE L1 2396 3252 -2628 2 1280 802 120 28 0 chr5 91155394 91155536 -61381723 + L1_Mus3 LINE L1 6492 6637 -1 2 1280 1310 307 75 22 chr5 91155536 91155610 -61381649 + L1_Mur3 LINE L1 3253 3323 -2557 2 1280 1820 257 93 75 chr5 91155724 91156680 -61380579 + L1MA5A LINE L1 4352 5324 -819 2 1280 748 127 0 0 chr5 91156680 91156790 -61380469 + RLTR22_Mus LTR ERVK 2 111 -1697 2 1280 3030 76 12 5 chr5 91156788 91157210 -61380049 + RLTR22_Mus LTR ERVK 395 819 -989 2 1280 1352 279 72 56 chr5 91157594 91158286 -61378973 + L1MA5A LINE L1 5320 6022 -278 2 1280 297 75 0 0 chr5 91158652 91158692 -61378567 + (CATA)n Simple_repeat Simple_repeat 3 42 0 2 1280 379 333 18 0 chr5 91158997 91159108 -61378151 - PB1D7 SINE Alu -7 113 1 2 1280 223 240 47 28 chr5 91159430 91159537 -61377722 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 2 1280 21 36 0 0 chr5 91159596 91159624 -61377635 + AT_rich Low_complexity Low_complexity 1 28 0 2 1280 2156 148 25 69 chr5 91159681 91160175 -61377084 + IAPLTR2_Mm LTR ERVK 1 449 -26 2 1280 24 77 0 0 chr5 91162012 91162064 -61375195 + AT_rich Low_complexity Low_complexity 1 52 0 2 1280 839 292 73 6 chr5 91162859 91163200 -61374059 - L1MA6 LINE L1 -139 6161 5798 2 1280 275 307 155 43 chr5 91163373 91163676 -61373583 - L1M4 LINE L1 -473 5691 5355 2 1280 373 348 79 34 chr5 91163700 91164170 -61373089 - L1M4 LINE L1 -826 5320 4830 2 1280 336 350 8 0 chr5 91164174 91164297 -61372962 + MIR SINE MIR 9 132 -130 2 1280 274 310 0 14 chr5 91164341 91164413 -61372846 - MIR SINE MIR -97 111 41 2 1280 341 286 47 19 chr5 91164603 91164710 -61372549 + PB1D10 SINE Alu 1 110 -7 2 1280 741 155 0 0 chr5 91165429 91165558 -61371701 + CT-rich Low_complexity Low_complexity 2 130 0 2 1280 2077 183 52 5 chr5 91167473 91167879 -61369380 - Lx9 LINE L1 -4 7640 7216 2 1280 390 183 0 0 chr5 91168321 91168436 -61368823 + (CA)n Simple_repeat Simple_repeat 2 116 0 2 1280 1010 235 87 19 chr5 91168823 91169088 -61368171 + Lx9 LINE L1 7241 7523 -121 2 1280 246 229 0 0 chr5 91169088 91169158 -61368101 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1280 319 268 118 50 chr5 91169158 91169319 -61367940 + HAL1-3A_ME LINE L1 1975 2146 -712 2 1280 870 62 0 0 chr5 91169537 91169650 -61367609 + (TTTC)n Simple_repeat Simple_repeat 2 114 0 2 1280 304 21 149 0 chr5 91169655 91169702 -61367557 - L1_Mus3 LINE L1 -6 6632 6579 2 1280 391 109 0 0 chr5 91169702 91169757 -61367502 - Lx2 LINE L1 -231 6766 6712 2 1280 32 0 0 0 chr5 91169820 91169852 -61367407 + AT_rich Low_complexity Low_complexity 1 32 0 2 1280 306 361 100 40 chr5 91169954 91170355 -61366904 + L2 LINE L2 2260 2684 -735 2 1280 294 73 0 0 chr5 91170455 91170496 -61366763 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1280 345 47 0 0 chr5 91171619 91171662 -61365597 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 2 1280 1044 236 123 113 chr5 91172705 91172790 -61364469 - MTD LTR MaLR -14 405 358 2 1280 1801 60 0 0 chr5 91172790 91173006 -61364253 - L1Md_T LINE L1 0 6582 6367 2 1280 1044 236 123 113 chr5 91173006 91173317 -61363942 - MTD LTR MaLR -62 357 5 2 1280 307 322 26 83 chr5 91174025 91174218 -61363041 + HAL1-3A_ME LINE L1 2174 2355 -503 2 1280 213 304 0 48 chr5 91175868 91175951 -61361308 + CT-rich Low_complexity Low_complexity 1 79 0 2 1280 2722 118 48 46 chr5 91176452 91176912 -61360347 + Lx4B LINE L1 6587 7047 -11 2 1280 2585 79 29 21 chr5 91176932 91177306 -61359953 + MTB_Mm LTR MaLR 1 377 -30 2 1280 950 110 29 0 chr5 91177323 91177459 -61359800 - B1_Mm SINE Alu -1 146 7 2 1280 278 296 37 12 chr5 91177924 91178006 -61359253 - MER58B DNA MER1_type -1 340 257 2 1280 1055 182 114 5 chr5 91178588 91178781 -61358478 - B3 SINE B2 -1 215 2 2 1280 389 261 8 40 chr5 91178794 91178918 -61358341 - L1M4 LINE L1 -991 5155 5036 2 1280 595 332 94 39 chr5 91180229 91180396 -61356863 + L1ME2z LINE L1 4281 4456 -1690 2 1280 3365 60 8 10 chr5 91180396 91180797 -61356462 + MTB LTR MaLR 1 400 0 2 1280 595 332 94 39 chr5 91180797 91181302 -61355957 + L1ME2z LINE L1 4457 4990 -1156 2 1280 273 197 0 0 chr5 91181340 91181401 -61355858 + (TAAA)n Simple_repeat Simple_repeat 4 64 0 2 1280 230 292 61 8 chr5 91181514 91181645 -61355614 + L1ME2z LINE L1 5319 5456 -723 2 1280 359 399 139 25 chr5 91181893 91182230 -61355029 - MLT1G1 LTR MaLR -162 417 1 2 1280 658 238 8 8 chr5 91182270 91182397 -61354862 - RSINE1 SINE B4 -36 129 3 2 1280 24 0 0 0 chr5 91182463 91182487 -61354772 + AT_rich Low_complexity Low_complexity 1 24 0 2 1280 302 314 10 0 chr5 91182532 91182634 -61354625 + L1ME2z LINE L1 5803 5905 -539 2 1280 240 187 53 13 chr5 91183341 91183417 -61353842 + (TA)n Simple_repeat Simple_repeat 1 79 0 2 1280 640 324 62 0 chr5 91183761 91183940 -61353319 - B3A SINE B2 -7 191 2 2 1280 192 77 0 0 chr5 91183984 91184010 -61353249 + (TA)n Simple_repeat Simple_repeat 1 26 0 2 1280 236 122 0 39 chr5 91184353 91184404 -61352855 + GA-rich Low_complexity Low_complexity 3 51 0 2 1280 22 0 0 0 chr5 91185859 91185881 -61351378 + AT_rich Low_complexity Low_complexity 1 22 0 2 1280 444 82 0 0 chr5 91186493 91186554 -61350705 + (CGTG)n Simple_repeat Simple_repeat 2 62 0 2 1280 585 0 0 0 chr5 91187594 91187659 -61349600 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 2 1280 617 210 17 142 chr5 91187738 91187971 -61349288 - B3 SINE B2 -8 208 5 2 1280 1311 46 0 0 chr5 91189227 91189402 -61347857 + (TC)n Simple_repeat Simple_repeat 2 176 0 2 1280 243 0 0 0 chr5 91189402 91189428 -61347831 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1280 1043 30 23 0 chr5 91189825 91189958 -61347301 + (TATATG)n Simple_repeat Simple_repeat 2 137 0 2 1280 198 0 0 0 chr5 91191806 91191828 -61345431 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 2 1280 190 384 45 26 chr5 91191829 91191984 -61345275 + L2b LINE L2 3145 3302 -73 2 1280 294 343 65 0 chr5 91194410 91194518 -61342741 - RSINE1 SINE B4 -15 150 36 2 1280 367 264 25 76 chr5 91196063 91196162 -61341097 + B1F SINE Alu 1 94 -55 2 1280 1394 148 13 13 chr5 91196162 91196388 -61340871 - URR1A DNA MER1_type 0 226 1 2 1280 367 264 25 76 chr5 91196388 91196407 -61340852 + B1F SINE Alu 95 113 -36 2 1280 606 158 46 30 chr5 91198777 91198908 -61338351 - Lx9 LINE L1 -8 7636 7504 2 1280 450 0 0 0 chr5 91199259 91199309 -61337950 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1280 270 263 0 17 chr5 91199309 91199367 -61337892 - tRNA-Ala-GCY_ tRNA tRNA -17 58 2 2 1280 312 320 63 0 chr5 91199501 91199647 -61337612 + MIR SINE MIR 65 233 -35 2 1280 458 222 0 24 chr5 91199759 91199842 -61337417 + ID4_ SINE ID 3 83 0 2 1280 370 304 130 34 chr5 91203187 91203364 -61333895 - MLT1D LTR MaLR -308 197 4 3 1280 218 254 0 17 chr5 91203926 91203986 -61333273 + G-rich Low_complexity Low_complexity 2 60 0 3 1280 1852 30 94 8 chr5 91204958 91205192 -61332067 - L1_Mus1 LINE L1 -131 6436 6183 3 1280 583 75 0 0 chr5 91205195 91205275 -61331984 + L1_Mus1 LINE L1 6488 6567 0 3 1280 1631 98 4 61 chr5 91205589 91205850 -61331409 - Lx LINE L1 -12 6642 6397 3 1280 305 264 101 17 chr5 91205873 91206007 -61331252 - MLT1A1 LTR MaLR -13 395 209 3 1280 281 244 0 11 chr5 91206018 91206105 -61331154 + GA-rich Low_complexity Low_complexity 1 86 0 3 1280 282 311 130 53 chr5 91208538 91208745 -61328514 - L1MD3 LINE L1 -137 7858 7636 3 1280 804 108 24 12 chr5 91208773 91208942 -61328317 + (CAGAGA)n Simple_repeat Simple_repeat 2 172 0 3 1280 263 267 199 7 chr5 91208974 91209125 -61328134 - L1MD3 LINE L1 -406 7476 7297 3 1280 380 281 96 25 chr5 91209333 91209490 -61327769 + MIR SINE MIR 49 216 -46 3 1280 252 0 0 0 chr5 91209550 91209578 -61327681 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1280 2215 191 50 11 chr5 91209707 91209912 -61327347 + Lx7 LINE L1 6539 6747 -949 3 1280 315 0 0 0 chr5 91209912 91209947 -61327312 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1280 2215 191 50 11 chr5 91209947 91210197 -61327062 + Lx7 LINE L1 6748 7011 -685 3 1280 604 146 0 30 chr5 91210193 91210280 -61326979 - L1_Mur3 LINE L1 -1307 4573 4488 3 1280 2930 149 29 6 chr5 91210280 91210758 -61326501 + Lx LINE L1 6161 6649 -5 3 1280 604 146 0 30 chr5 91210758 91210769 -61326490 - L1_Mur3 LINE L1 -1393 4487 4478 3 1280 1595 277 53 9 chr5 91210759 91211192 -61326067 + Lx6 LINE L1 6993 7444 -16 3 1280 36 62 0 0 chr5 91211192 91211256 -61326003 + AT_rich Low_complexity Low_complexity 1 64 0 3 1280 2173 203 39 104 chr5 91211315 91211931 -61325328 + RMER1B Other Other 479 1054 -12 3 1280 406 280 92 8 chr5 91212130 91212249 -61325010 - B1F SINE Alu -14 135 7 3 1280 328 327 103 13 chr5 91212533 91212688 -61324571 + MIRc SINE MIR 39 210 -58 3 1280 264 30 0 0 chr5 91213073 91213106 -61324153 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1280 830 191 7 22 chr5 91213182 91213321 -61323938 + B1_Mur4 SINE Alu 1 137 -13 3 1280 355 208 8 8 chr5 91213447 91213578 -61323681 + (CA)n Simple_repeat Simple_repeat 1 131 0 3 1280 305 158 12 0 chr5 91213628 91213710 -61323549 + (CA)n Simple_repeat Simple_repeat 2 84 0 3 1280 363 338 55 21 chr5 91213797 91213826 -61323433 + ID_B1 SINE B4 65 214 -10 3 1280 417 319 43 0 chr5 91213826 91213942 -61323317 + B1F SINE Alu 19 139 -10 3 1280 297 167 0 0 chr5 91213942 91213996 -61323263 + (CAAT)n Simple_repeat Simple_repeat 4 57 0 3 1280 261 0 0 0 chr5 91214475 91214504 -61322755 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1280 273 29 0 0 chr5 91214504 91214537 -61322722 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1280 225 0 0 0 chr5 91216056 91216081 -61321178 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1280 423 0 0 0 chr5 91216081 91216127 -61321132 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1280 30 69 0 0 chr5 91217062 91217120 -61320139 + AT_rich Low_complexity Low_complexity 1 58 0 3 1280 565 234 9 2 chr5 91217296 91217434 -61319825 + B3 SINE B2 65 203 -13 3 1280 216 257 0 0 chr5 91217448 91217518 -61319741 + (TA)n Simple_repeat Simple_repeat 1 70 0 3 1280 183 302 38 0 chr5 91218252 91218305 -61318954 + L2 LINE L2 60 114 -3305 3 1280 254 143 0 20 chr5 91219613 91219663 -61317596 + CT-rich Low_complexity Low_complexity 1 49 0 3 1280 432 255 0 0 chr5 91220387 91220481 -61316778 + MLT1B LTR MaLR 11 104 -286 3 1280 5750 231 39 39 chr5 91220530 91221206 -61316053 + Lx7 LINE L1 6032 6704 -992 3 1280 3043 71 18 15 chr5 91221206 91221605 -61315654 - MTB LTR MaLR 0 400 1 3 1280 5750 231 39 39 chr5 91221605 91222294 -61314965 + Lx7 LINE L1 6705 7397 -299 3 1280 252 0 0 0 chr5 91222299 91222327 -61314932 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1280 1028 188 102 0 chr5 91222493 91222690 -61314569 + URR1B DNA MER1_type 1 217 -8 3 1280 334 262 93 23 chr5 91222766 91222895 -61314364 + MLT1B LTR MaLR 310 447 -20 3 1280 1041 192 96 0 chr5 91224434 91224632 -61312627 + URR1B DNA MER1_type 1 217 -8 3 1280 423 0 0 0 chr5 91224768 91224815 -61312444 + (CAAAC)n Simple_repeat Simple_repeat 1 47 0 3 1280 1171 60 35 0 chr5 91224955 91225237 -61312022 + (TATG)n Simple_repeat Simple_repeat 1 291 0 3 1280 316 289 9 19 chr5 91225765 91225871 -61311388 + RMER12 LTR ERVK 744 848 -474 3 1280 275 189 133 62 chr5 91225911 91226024 -61311235 - MLT1E2 LTR MaLR -4 620 500 3 1281 360 270 131 65 chr5 91226131 91226238 -61311021 - MLT1E2 LTR MaLR -121 532 386 3 1281 1164 174 59 41 chr5 91226263 91226484 -61310775 - URR1B DNA MER1_type 0 225 1 3 1281 210 91 0 0 chr5 91226484 91226517 -61310742 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 3 1281 3508 45 8 0 chr5 91227208 91227605 -61309654 - MTB LTR MaLR 0 400 1 3 1281 282 348 36 0 chr5 91227616 91227728 -61309531 + MER5A DNA MER1_type 73 188 -1 3 1281 1553 217 48 3 chr5 91228148 91228458 -61308801 - MTD LTR MaLR -95 324 1 3 1281 626 0 14 0 chr5 91228714 91228788 -61308471 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 3 1281 213 39 0 0 chr5 91228788 91228813 -61308446 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 3 1281 1410 190 119 23 chr5 91228842 91229187 -61308072 - Lx5 LINE L1 -5 7045 6668 3 1281 5451 117 28 2 chr5 91229184 91229966 -61307293 - L1_Mur2 LINE L1 -2024 3853 3060 3 1281 762 11 0 0 chr5 91229966 91230053 -61307206 + (TTC)n Simple_repeat Simple_repeat 2 88 0 3 1281 5451 117 28 2 chr5 91230053 91230126 -61307133 - L1_Mur2 LINE L1 -2818 3059 2978 3 1281 1088 150 43 21 chr5 91230462 91230676 -61306583 + RLTR13B4 LTR ERVK 3 239 -583 3 1281 566 244 41 0 chr5 91230933 91231056 -61306203 + B1F SINE Alu 12 139 -10 3 1281 486 0 0 0 chr5 91231056 91231110 -61306149 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1281 23 0 0 0 chr5 91231151 91231174 -61306085 + AT_rich Low_complexity Low_complexity 1 23 0 3 1281 481 328 106 17 chr5 91231211 91231447 -61305812 - B4 SINE B4 0 292 36 3 1281 696 236 114 134 chr5 91232240 91232538 -61304721 - B4 SINE B4 0 292 1 3 1281 234 128 0 0 chr5 91232583 91232622 -61304637 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 3 1281 777 328 38 11 chr5 91232823 91233088 -61304171 - B4A SINE B4 -20 272 1 3 1281 211 104 0 40 chr5 91234257 91234307 -61302952 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1281 372 346 58 75 chr5 91234362 91234709 -61302550 - ORR1E LTR MaLR 0 359 19 3 1281 22 0 0 0 chr5 91235427 91235449 -61301810 + AT_rich Low_complexity Low_complexity 1 22 0 3 1281 246 32 0 0 chr5 91235917 91235948 -61301311 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1281 587 256 85 26 chr5 91236515 91236704 -61300555 + RMER30 DNA MER1_type 1 200 -2 3 1281 489 285 125 29 chr5 91237013 91237324 -61299935 - L1M3c LINE L1 -842 5362 5022 3 1281 747 295 40 77 chr5 91237405 91238013 -61299246 - L1M3c LINE L1 -4681 1460 859 3 1281 293 310 46 0 chr5 91238162 91238249 -61299010 - L1M3c LINE L1 -5505 626 536 3 1281 2650 181 63 63 chr5 91238612 91239120 -61298139 - RLTR18B LTR ERVK 0 512 5 3 1281 642 328 40 32 chr5 91239203 91239452 -61297807 - MER47B DNA MER2_type -164 254 4 3 1281 240 35 0 0 chr5 91240501 91240530 -61296729 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1281 348 24 0 0 chr5 91240792 91240833 -61296426 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1281 356 323 29 35 chr5 91240940 91241110 -61296149 + Lx9 LINE L1 7225 7393 -251 3 1281 38872 32 0 1 chr5 91241509 91248356 -61288903 - L1Md_T LINE L1 0 6585 1 3 1281 631 121 8 17 chr5 91251093 91251211 -61286048 + (AGGGGG)n Simple_repeat Simple_repeat 6 122 0 3 1281 38922 11 2 7 chr5 91251251 91256668 -61280591 + L1Md_A LINE L1 205 5586 -297 3 1281 9571 3 1 0 chr5 91256668 91257663 -61279596 + L1Md_A LINE L1 5587 6582 0 3 1281 4423 8 0 0 chr5 91257663 91258154 -61279105 + L1Md_A LINE L1 5096 5586 -297 3 1281 9626 2 0 0 chr5 91258154 91259150 -61278109 + L1Md_A LINE L1 5587 6582 0 3 1281 2640 168 93 10 chr5 91259166 91259659 -61277600 + Lx5 LINE L1 6227 6760 -290 3 1281 750 214 60 0 chr5 91259784 91259952 -61277307 - Lx9 LINE L1 -427 7217 7040 3 1281 807 227 136 74 chr5 91259956 91260265 -61276994 - Lx7 LINE L1 -4 7692 7365 3 1281 326 314 183 0 chr5 91260972 91261141 -61276118 + Charlie1 DNA MER1_type 2 201 -2580 3 1281 230 310 19 48 chr5 91261139 91261244 -61276015 + Charlie1 DNA MER1_type 2647 2748 -33 3 1281 225 0 0 0 chr5 91261253 91261278 -61275981 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1281 207 0 0 0 chr5 91261478 91261501 -61275758 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1281 1739 225 36 4 chr5 91262059 91262465 -61274794 - MTD LTR MaLR -25 394 1 3 1281 878 323 134 36 chr5 91262682 91263160 -61274099 - MTE-int LTR MaLR -898 682 158 3 1281 692 291 62 91 chr5 91263216 91263590 -61273669 - ORR1D2 LTR MaLR -1 369 7 3 1281 183 313 139 44 chr5 91263929 91264066 -61273193 + MIR SINE MIR 70 219 -43 3 1281 324 323 21 0 chr5 91264163 91264259 -61273000 + PB1D10 SINE Alu 3 100 -17 3 1281 221 362 0 0 chr5 91264359 91264428 -61272831 + MIR SINE MIR 104 172 -90 3 1281 2333 45 45 0 chr5 91264975 91265266 -61271993 + L1Md_F2 LINE L1 5283 5586 -297 3 1281 8488 48 7 5 chr5 91265266 91266259 -61271000 + L1Md_F2 LINE L1 5587 6581 -1 3 1281 188 371 0 0 chr5 91266612 91266682 -61270577 + MIRc SINE MIR 66 135 -133 3 1281 483 18 0 0 chr5 91266904 91266960 -61270299 + (TCCC)n Simple_repeat Simple_repeat 3 58 0 3 1281 423 0 0 0 chr5 91267075 91267122 -61270137 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 3 1281 417 20 0 0 chr5 91267128 91267178 -61270081 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1281 541 339 79 71 chr5 91267498 91267892 -61269367 + MER31A LTR ERV1 3 399 -86 3 1281 1283 267 79 39 chr5 91267908 91268402 -61268857 - Lx8 LINE L1 -1 7472 6959 3 1281 541 204 6 6 chr5 91269045 91269218 -61268041 + (TG)n Simple_repeat Simple_repeat 1 173 0 3 1281 832 146 6 6 chr5 91269238 91269417 -61267842 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1281 291 54 0 0 chr5 91269993 91270030 -61267229 + (CCA)n Simple_repeat Simple_repeat 3 39 0 3 1281 536 208 0 15 chr5 91271042 91271174 -61266085 + (TATATG)n Simple_repeat Simple_repeat 2 131 0 3 1281 267 261 46 0 chr5 91271219 91271284 -61265975 + Lx8 LINE L1 6583 6650 -823 3 1281 378 0 0 0 chr5 91271306 91271348 -61265911 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1281 477 34 0 0 chr5 91271917 91271976 -61265283 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1281 361 298 41 16 chr5 91271995 91272118 -61265141 + Lx8 LINE L1 6434 6559 -914 4 1281 322 289 12 0 chr5 91272122 91272205 -61265054 + Lx8 LINE L1 6670 6753 -720 4 1281 1786 244 92 35 chr5 91272238 91272838 -61264421 + Lx8 LINE L1 6840 7473 0 4 1281 3007 84 32 10 chr5 91273327 91273737 -61263522 + BGLII LTR ERVK 1 419 -2 4 1281 1156 175 207 26 chr5 91274152 91274457 -61262802 + RMER3D-int LTR ERVK 489 848 -1994 4 1281 2007 200 103 38 chr5 91274490 91275338 -61261921 + RMER3D-int LTR ERVK 354 1533 -1309 4 1281 1431 171 64 57 chr5 91275379 91275874 -61261385 + RMER3D-int LTR ERVK 1542 2267 -575 4 1281 1407 206 98 10 chr5 91275878 91276295 -61260964 + MYSERV16_I-int LTR ERVK 1873 2326 0 4 1281 3221 86 2 9 chr5 91276295 91276719 -61260540 + BGLII LTR ERVK 1 421 0 4 1281 1278 203 19 105 chr5 91276869 91277183 -61260076 - ORR1C2 LTR MaLR 0 384 98 4 1281 2549 53 3 3 chr5 91277193 91277516 -61259743 + IAPEY2_LTR LTR ERVK 32 354 -3 4 1281 15568 108 10 17 chr5 91277520 91279855 -61257404 + IAPEY3-int LTR ERVK 21 2689 -4991 4 1281 1642 46 0 0 chr5 91279848 91280042 -61257217 + IAPEY3-int LTR ERVK 4852 5045 -2635 4 1281 704 119 10 0 chr5 91280034 91280135 -61257124 + IAPEY3-int LTR ERVK 3186 3287 -4393 4 1281 3673 67 56 0 chr5 91280135 91280867 -61256392 + IAPEY3-int LTR ERVK 6908 7680 0 4 1281 2581 50 0 3 chr5 91280877 91281201 -61256058 + IAPEY2_LTR LTR ERVK 32 354 -3 4 1281 495 168 0 50 chr5 91281206 91281306 -61255953 - ORR1C2 LTR MaLR -283 95 1 4 1281 191 336 122 27 chr5 91281577 91281724 -61255535 + MIRc SINE MIR 21 181 -87 4 1281 227 0 0 0 chr5 91283435 91283460 -61253799 - L1Md_F2 LINE L1 -557 6025 6001 4 1281 4169 78 15 11 chr5 91283460 91283995 -61253264 + L1Md_F2 LINE L1 6040 6576 -6 4 1281 767 199 204 0 chr5 91284991 91285167 -61252092 + B3 SINE B2 1 212 -4 4 1281 186 43 0 0 chr5 91285843 91285866 -61251393 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1281 228 397 0 14 chr5 91286905 91286979 -61250280 - MamGypLTR2c LTR Gypsy -782 286 214 4 1281 436 296 67 34 chr5 91287078 91287256 -61250003 - MER20 DNA MER1_type -33 186 3 4 1281 474 18 0 0 chr5 91287359 91287414 -61249845 + (CAGT)n Simple_repeat Simple_repeat 4 58 0 4 1281 252 227 15 0 chr5 91288266 91288332 -61248927 + L1_Mur3 LINE L1 1828 1894 -3986 4 1281 226 358 102 67 chr5 91290383 91290757 -61246502 + LTR16E1 LTR ERVL 136 522 -16 4 1281 198 128 0 0 chr5 91291783 91291822 -61245437 + (A)n Simple_repeat Simple_repeat 1 39 0 4 1281 1472 267 142 21 chr5 91291824 91292523 -61244736 + Lx8 LINE L1 6436 7218 -255 4 1281 731 252 127 23 chr5 91292655 91292915 -61244344 - RMER20B LTR ERVK -214 413 127 4 1281 785 270 43 35 chr5 91293057 91293314 -61243945 + Lx8 LINE L1 7215 7473 0 4 1281 25 0 0 0 chr5 91293773 91293798 -61243461 + AT_rich Low_complexity Low_complexity 1 25 0 4 1281 248 131 0 21 chr5 91293914 91293961 -61243298 + (TATG)n Simple_repeat Simple_repeat 1 46 0 4 1281 230 345 126 23 chr5 91294071 91294203 -61243056 - B4 SINE B4 -44 248 101 4 1281 3030 38 117 0 chr5 91294203 91294571 -61242688 + IAPLTR2a LTR ERVK 1 411 0 4 1281 230 345 126 23 chr5 91294571 91294613 -61242646 - B4 SINE B4 -192 100 56 4 1281 189 156 267 0 chr5 91295143 91295188 -61242071 - MIRb SINE MIR -29 239 183 4 1281 202 209 0 0 chr5 91295188 91295231 -61242028 + CT-rich Low_complexity Low_complexity 2 44 0 4 1281 360 0 0 0 chr5 91295231 91295271 -61241988 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1281 418 250 0 0 chr5 91297355 91297439 -61239820 + BC1_Mm scRNA scRNA 2 85 -67 4 1281 852 280 17 27 chr5 91298207 91298503 -61238756 - Lx9 LINE L1 -334 7310 6886 4 1281 643 35 23 0 chr5 91298505 91298592 -61238667 - L1Md_F3 LINE L1 -3 6581 6493 4 1281 2121 82 30 14 chr5 91298592 91298889 -61238370 + L1Md_F2 LINE L1 5889 6190 -392 4 1281 1073 296 51 6 chr5 91298862 91299195 -61238064 - Lx9 LINE L1 -610 7034 6687 4 1281 450 295 95 0 chr5 91300102 91300207 -61237052 + PB1 SINE Alu 1 115 -12 4 1281 243 261 0 0 chr5 91300463 91300509 -61236750 - ID4_ SINE ID -20 63 18 4 1281 351 0 0 0 chr5 91300627 91300666 -61236593 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1281 324 261 59 59 chr5 91301010 91301128 -61236131 + ORSL DNA Tip100 1 118 -157 4 1281 189 121 0 0 chr5 91302019 91302052 -61235207 + (CAGA)n Simple_repeat Simple_repeat 3 35 0 4 1281 230 341 0 24 chr5 91302060 91302144 -61235115 - L1MC4 LINE L1 -371 7671 7590 4 1281 505 324 27 72 chr5 91302266 91302529 -61234730 - MLT1B LTR MaLR -2 388 138 4 1281 768 214 24 42 chr5 91302696 91302862 -61234397 + ORR1D1 LTR MaLR 1 163 -211 4 1281 560 73 12 0 chr5 91302863 91302945 -61234314 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 4 1281 787 231 25 20 chr5 91302990 91303193 -61234066 + RLTR22_Mur LTR ERVK 152 355 -1493 4 1281 468 225 29 86 chr5 91303219 91303360 -61233899 + RLTR22_Mur LTR ERVK 1194 1322 -526 4 1281 453 62 0 0 chr5 91303360 91303425 -61233834 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1281 468 238 34 90 chr5 91303425 91303482 -61233777 + RLTR22_Mur LTR ERVK 1276 1357 -491 4 1281 405 0 0 0 chr5 91304136 91304181 -61233078 + (GTATG)n Simple_repeat Simple_repeat 3 47 0 4 1281 1315 165 32 5 chr5 91304656 91304875 -61232384 - URR1B DNA MER1_type 0 225 1 4 1281 507 317 166 53 chr5 91305937 91306612 -61230647 + Arthur1B DNA Tip100 59 811 -414 4 1281 526 248 58 7 chr5 91306612 91306766 -61230493 - MTD LTR MaLR 0 419 258 4 1281 234 316 97 26 chr5 91306827 91307022 -61230237 + Arthur1B DNA Tip100 1004 1212 -13 4 1281 429 20 0 0 chr5 91307545 91307595 -61229664 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 4 1281 1214 75 14 0 chr5 91307599 91307745 -61229514 - B1_Mus1 SINE Alu 0 148 1 4 1281 282 302 94 7 chr5 91307923 91308062 -61229197 + MIRb SINE MIR 104 252 -10 4 1281 180 77 0 0 chr5 91309119 91309145 -61228114 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4 1281 450 36 0 0 chr5 91310578 91310634 -61226625 + (CA)n Simple_repeat Simple_repeat 1 56 0 4 1281 205 87 64 21 chr5 91311026 91311073 -61226186 + (CTCTG)n Simple_repeat Simple_repeat 2 50 0 4 1281 718 22 0 101 chr5 91311078 91311276 -61225983 + (TC)n Simple_repeat Simple_repeat 2 179 0 4 1281 1218 82 0 0 chr5 91311662 91311809 -61225450 + B1_Mus2 SINE Alu 1 147 0 4 1281 189 0 0 0 chr5 91311809 91311830 -61225429 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1281 216 213 31 21 chr5 91311833 91311864 -61225395 + (TAGA)n Simple_repeat Simple_repeat 3 35 0 4 1281 534 16 0 0 chr5 91311864 91311927 -61225332 + (CATA)n Simple_repeat Simple_repeat 2 64 0 4 1281 216 213 31 21 chr5 91311927 91311991 -61225268 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 4 1281 964 124 6 11 chr5 91312002 91312181 -61225078 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 4 1281 324 296 45 0 chr5 91312612 91312700 -61224559 + MT2B LTR ERVL 181 272 -329 4 1281 1100 182 316 50 chr5 91312630 91312855 -61224404 + RLTR25B LTR ERVK 521 808 -220 4 1281 249 33 0 0 chr5 91312855 91312885 -61224374 + (CAGA)n Simple_repeat Simple_repeat 3 32 0 4 1281 387 0 0 0 chr5 91312886 91312929 -61224330 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1281 1100 208 78 87 chr5 91312929 91313151 -61224108 + RLTR25B LTR ERVK 809 1028 0 4 1281 372 43 0 0 chr5 91313555 91313601 -61223658 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1281 692 302 0 6 chr5 91313620 91313803 -61223456 - B3A SINE B2 -16 182 1 4 1281 225 178 0 22 chr5 91314229 91314275 -61222984 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1281 1369 169 27 5 chr5 91314684 91314904 -61222355 + URR1B DNA MER1_type 1 225 0 4 1281 366 286 13 74 chr5 91315026 91315167 -61222092 - MLT1A LTR MaLR -17 450 262 4 1281 201 121 0 0 chr5 91315197 91315230 -61222029 + (GGGAGA)n Simple_repeat Simple_repeat 5 37 0 4 1281 245 288 103 8 chr5 91315300 91315426 -61221833 - MLT1A LTR MaLR -270 138 1 4 1281 4052 58 30 4 chr5 91316190 91316695 -61220564 - L1_Mus3 LINE L1 -5 6633 6116 4 1281 312 277 177 0 chr5 91317536 91317666 -61219593 - L1MB4 LINE L1 -1 6179 6027 4 1281 821 274 45 35 chr5 91317688 91317975 -61219284 + B4A SINE B4 3 292 0 4 1281 626 266 99 19 chr5 91318298 91318459 -61218800 - B3A SINE B2 -23 175 2 4 1281 262 290 9 91 chr5 91318853 91318963 -61218296 - MIR SINE MIR -67 195 95 4 1281 211 128 0 60 chr5 91319130 91319180 -61218079 + A-rich Low_complexity Low_complexity 5 51 0 4 1281 369 0 0 0 chr5 91319359 91319400 -61217859 + (TAA)n Simple_repeat Simple_repeat 1 41 0 4 1281 241 0 49 49 chr5 91321338 91321379 -61215880 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 4 1281 183 42 0 0 chr5 91321635 91321659 -61215600 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 4 1281 253 208 0 0 chr5 91321771 91321824 -61215435 - L2a LINE L2 -5 3421 3369 4 1281 23 33 0 0 chr5 91322120 91322150 -61215109 + AT_rich Low_complexity Low_complexity 1 30 0 4 1281 603 114 0 0 chr5 91322405 91322493 -61214766 + 5S rRNA rRNA 1 88 -33 4 1281 281 333 0 39 chr5 91322498 91322601 -61214658 - PB1D10 SINE Alu -18 99 1 4 1281 308 246 67 0 chr5 91322895 91323029 -61214230 + ORR1B1-int LTR MaLR 612 754 -755 4 1281 515 253 37 99 chr5 91322912 91322927 -61214332 + B4 SINE B4 76 216 -76 4 1281 1008 93 14 0 chr5 91322927 91323059 -61214200 + B1_Mus2 SINE Alu 6 139 -8 4 1281 254 0 83 0 chr5 91323059 91323095 -61214164 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1281 617 308 55 53 chr5 91323478 91323930 -61213329 + L1MD3 LINE L1 7528 7980 -15 4 1281 7219 147 60 12 chr5 91324040 91325630 -61211629 + Lx3C LINE L1 5277 6975 -1 4 1281 276 77 0 0 chr5 91327882 91327921 -61209338 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1281 291 274 0 0 chr5 91327940 91328002 -61209257 - B4A SINE B4 -211 81 20 4 1281 255 327 0 0 chr5 91329798 91329853 -61207406 - B3 SINE B2 -29 187 133 4 1281 252 0 0 0 chr5 91330989 91331017 -61206242 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 4 1281 418 274 8 41 chr5 91331168 91331290 -61205969 - PB1D9 SINE Alu -2 118 1 4 1281 582 15 0 0 chr5 91331926 91331993 -61205266 + (GA)n Simple_repeat Simple_repeat 2 68 0 4 1281 249 119 0 0 chr5 91334346 91334388 -61202871 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4 1281 351 0 0 0 chr5 91335282 91335321 -61201938 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1281 360 0 0 0 chr5 91335689 91335729 -61201530 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1281 236 250 14 56 chr5 91336393 91336465 -61200794 + RSINE1 SINE B4 11 79 -86 4 1281 360 0 0 0 chr5 91336496 91336536 -61200723 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1281 493 266 73 56 chr5 91336934 91337113 -61200146 - MTEb LTR MaLR -197 182 1 5 1281 650 257 27 0 chr5 91337288 91337436 -61199823 - RSINE1 SINE B4 -4 161 10 5 1281 253 182 36 0 chr5 91337547 91337602 -61199657 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 5 1281 338 316 97 31 chr5 91338649 91338845 -61198414 - L1M5 LINE L1 -1902 4244 4036 5 1281 36451 14 2 8 chr5 91338843 91344208 -61193051 + L1Md_A LINE L1 257 5586 -297 5 1281 8800 16 0 0 chr5 91344208 91345202 -61192057 + L1Md_A LINE L1 5587 6580 -2 5 1281 21 0 0 0 chr5 91345295 91345316 -61191943 + AT_rich Low_complexity Low_complexity 1 21 0 5 1281 291 211 10 21 chr5 91345377 91345474 -61191785 + (TTA)n Simple_repeat Simple_repeat 2 97 0 5 1281 3850 162 46 56 chr5 91345640 91346118 -61191141 + RMER12 LTR ERVK 1 469 -853 5 1281 1298 92 16 5 chr5 91346118 91346303 -61190956 - B2_Mm2 SINE B2 -7 188 2 5 1281 3850 162 46 56 chr5 91346303 91346630 -61190629 + RMER12 LTR ERVK 470 798 -524 5 1281 1172 236 109 14 chr5 91346601 91346949 -61190310 + RMER12 LTR ERVK 940 1320 -2 5 1281 1162 36 7 0 chr5 91346975 91347113 -61190146 + B1_Mus1 SINE Alu 1 139 -9 5 1281 261 0 0 0 chr5 91347113 91347142 -61190117 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1281 1623 170 88 31 chr5 91347681 91347867 -61189392 - RMER17C LTR ERVK 0 410 225 5 1281 333 0 0 0 chr5 91347867 91347904 -61189355 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1281 779 31 0 52 chr5 91347912 91348046 -61189213 + (GAGAA)n Simple_repeat Simple_repeat 5 131 0 5 1281 1623 170 88 31 chr5 91348046 91348238 -61189021 - RMER17C LTR ERVK -194 216 3 5 1281 324 310 50 10 chr5 91348578 91348679 -61188580 - ORR1E LTR MaLR -249 110 6 5 1281 13118 63 11 4 chr5 91348976 91350878 -61186381 + MusHAL1 LINE L1 166 2080 -632 5 1281 34 24 0 0 chr5 91351457 91351498 -61185761 + AT_rich Low_complexity Low_complexity 1 41 0 5 1281 1880 193 90 54 chr5 91351616 91352272 -61184987 + BGLII_B LTR ERVK 1 528 -33 5 1281 1236 172 14 31 chr5 91352979 91352992 -61184267 - URR1B DNA MER1_type -7 218 211 5 1281 2178 112 15 21 chr5 91352992 91353321 -61183938 - ORR1A2 LTR MaLR 0 327 1 5 1281 1236 172 14 31 chr5 91353321 91353529 -61183730 - URR1B DNA MER1_type -15 210 1 5 1281 526 282 92 33 chr5 91353591 91353862 -61183397 + L1M2 LINE L1 4738 5024 -1119 5 1281 2887 9 0 0 chr5 91353948 91354270 -61182989 - RLTRETN_Mm LTR ERVK 0 322 1 5 160 39462 23 3 10 chr5 91354270 91359145 -61178114 - MMETn-int LTR ERVK 0 4844 1 5 1282 2887 9 0 0 chr5 91359145 91359467 -61177792 - RLTRETN_Mm LTR ERVK 0 322 1 5 1282 270 276 156 25 chr5 91359705 91359865 -61177394 - LTR65 LTR ERV1 -433 236 56 5 1282 21 0 0 0 chr5 91360254 91360275 -61176984 + GC_rich Low_complexity Low_complexity 1 21 0 5 1282 25 75 0 0 chr5 91360475 91360528 -61176731 + GC_rich Low_complexity Low_complexity 1 53 0 5 1282 432 0 0 0 chr5 91362726 91362774 -61174485 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1282 180 0 0 0 chr5 91363293 91363313 -61173946 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1282 1351 43 0 0 chr5 91363313 91363477 -61173782 - B2_Mm2 SINE B2 -31 164 1 5 1282 327 25 0 0 chr5 91364088 91364128 -61173131 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1282 297 0 0 0 chr5 91364222 91364255 -61173004 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1282 467 260 150 0 chr5 91364389 91364516 -61172743 - B1_Mur1 SINE Alu -2 147 2 5 1282 432 251 199 54 chr5 91364594 91364836 -61172423 + Charlie4a DNA MER1_type 8 284 -224 5 1282 317 292 78 17 chr5 91364848 91364963 -61172296 + Charlie4a DNA MER1_type 370 491 -17 5 1282 260 297 217 21 chr5 91366226 91366755 -61170504 - BLACKJACK DNA AcHobo -38 2906 2274 5 1282 317 158 12 35 chr5 91366795 91366880 -61170379 + Lx6 LINE L1 7378 7460 0 5 1282 227 293 205 12 chr5 91367069 91367152 -61170107 + Tigger7 DNA MER2_type 2 100 -2391 5 1282 323 280 229 11 chr5 91367710 91367898 -61169361 - MLT1B LTR MaLR -158 232 4 5 1282 287 258 104 94 chr5 91367916 91368117 -61169142 - BLACKJACK DNA AcHobo -932 2012 1810 5 1282 259 317 58 53 chr5 91368181 91368371 -61168888 - BLACKJACK DNA AcHobo -1269 1675 1485 5 1282 291 256 47 0 chr5 91368728 91368814 -61168445 + L1M3e LINE L1 1 90 -6940 5 1282 506 263 70 0 chr5 91368847 91369060 -61168199 + L1M3 LINE L1 4376 4603 -1537 5 1282 233 341 52 0 chr5 91369083 91369218 -61168041 + L1M3 LINE L1 4539 4680 -1460 5 1282 3732 113 29 127 chr5 91369369 91370202 -61167057 - RMER17A LTR ERVK 0 751 1 5 1282 2133 294 119 16 chr5 91370215 91371857 -61165402 + L1M3e LINE L1 3936 5747 -1356 5 1282 230 265 38 38 chr5 91371911 91372068 -61165191 + L1M3e LINE L1 5853 6009 -1094 5 1282 440 248 38 30 chr5 91372082 91372215 -61165044 - Lx8 LINE L1 -1014 6459 6326 5 1282 180 0 0 0 chr5 91372336 91372356 -61164903 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1282 405 58 0 0 chr5 91372781 91372833 -61164426 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 5 1282 254 246 60 26 chr5 91372860 91372977 -61164282 + Lx8 LINE L1 7353 7473 0 5 1282 859 275 35 137 chr5 91373341 91373708 -61163551 + RLTR18 LTR ERVK 1 324 -292 5 1282 1138 204 5 0 chr5 91373708 91373909 -61163350 - RLTR20A LTR ERVK -1 540 339 5 1282 2239 49 14 10 chr5 91373925 91374216 -61163043 - L1_Mus1 LINE L1 0 6567 6276 5 1282 2776 70 16 3 chr5 91374216 91374602 -61162657 + L1_Mus1 LINE L1 5886 6276 -291 5 1282 1606 231 44 21 chr5 91374602 91374991 -61162268 - RLTR20A2 LTR ERVK -180 398 1 5 1282 1374 246 0 24 chr5 91375004 91375300 -61161959 + RLTR18B LTR ERVK 224 512 0 5 1282 260 283 43 21 chr5 91375303 91375397 -61161862 - MLT1A LTR MaLR -276 98 3 5 1282 620 258 87 16 chr5 91375534 91375719 -61161540 - B3A SINE B2 0 198 1 5 1282 3041 73 5 2 chr5 91376053 91376453 -61160806 + MTB_Mm LTR MaLR 4 404 -3 5 1282 4784 131 19 10 chr5 91376939 91377769 -61159490 - Lx3B LINE L1 -41 6932 6095 5 1282 982 308 87 26 chr5 91378171 91378407 -61158852 - Tigger6b DNA MER2_type -14 1583 1339 5 1282 279 0 0 0 chr5 91378407 91378438 -61158821 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1282 982 308 87 26 chr5 91378438 91378744 -61158515 - Tigger6b DNA MER2_type -259 1338 1009 5 1282 310 319 183 30 chr5 91378796 91379129 -61158130 - Tigger6b DNA MER2_type -1028 569 186 5 1282 335 320 48 16 chr5 91379157 91379281 -61157978 - Tigger6b DNA MER2_type -1465 132 5 5 1282 940 152 131 10 chr5 91379489 91379688 -61157571 + URR1A DNA MER1_type 1 223 -3 5 1282 268 173 60 24 chr5 91380078 91380161 -61157098 + L1M2 LINE L1 4540 4625 -1518 5 1282 359 283 14 22 chr5 91380223 91380366 -61156893 + L1MA8 LINE L1 5943 6084 -207 5 1282 459 202 0 0 chr5 91380385 91380504 -61156755 + (TA)n Simple_repeat Simple_repeat 2 120 0 5 1282 216 310 11 22 chr5 91380947 91381036 -61156223 - MIR SINE MIR -56 206 119 5 1282 222 340 170 0 chr5 91381184 91381343 -61155916 + MIRb SINE MIR 15 200 -68 5 1282 21 36 0 0 chr5 91381369 91381397 -61155862 + AT_rich Low_complexity Low_complexity 1 28 0 5 1282 490 358 73 9 chr5 91381654 91381874 -61155385 + B4A SINE B4 3 236 -56 5 1282 351 236 21 0 chr5 91381910 91382050 -61155209 + (CATA)n Simple_repeat Simple_repeat 4 146 0 5 1282 207 0 0 0 chr5 91382495 91382518 -61154741 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1282 21077 15 0 0 chr5 91382690 91385888 -61151371 - L1Md_A LINE L1 0 6582 3384 5 1282 34 0 0 0 chr5 91386028 91386062 -61151197 + AT_rich Low_complexity Low_complexity 1 34 0 5 1282 752 130 0 39 chr5 91386607 91386735 -61150524 + URR1B DNA MER1_type 103 225 0 5 1282 341 244 113 25 chr5 91386978 91387115 -61150144 + L2a LINE L2 3226 3426 0 5 1282 234 262 83 0 chr5 91387299 91387383 -61149876 - L1MC LINE L1 -1537 4609 4519 5 1282 245 296 102 41 chr5 91387358 91387811 -61149448 - L1MEa LINE L1 -1603 4543 4058 5 1282 1544 37 16 5 chr5 91387868 91388059 -61149200 + B2_Mm2 SINE B2 2 194 -1 5 1282 690 122 0 0 chr5 91388067 91388174 -61149085 + (GA)n Simple_repeat Simple_repeat 2 108 0 5 1282 768 77 0 0 chr5 91388177 91388281 -61148978 + (GGAA)n Simple_repeat Simple_repeat 1 104 0 5 1282 231 260 27 14 chr5 91388364 91388438 -61148821 - L1MEa LINE L1 -5651 485 411 5 1282 3018 88 10 2 chr5 91389150 91389549 -61147710 - L1_Mus3 LINE L1 0 6638 6237 5 1282 726 252 66 51 chr5 91390490 91390791 -61146468 - ORR1D1 LTR MaLR 0 370 2 5 1282 244 91 0 68 chr5 91390820 91390879 -61146380 + CT-rich Low_complexity Low_complexity 2 56 0 5 1282 1785 240 22 187 chr5 91391011 91391480 -61145779 + RMER19C LTR ERVK 1 379 -232 5 1282 180 0 0 0 chr5 91391480 91391500 -61145759 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 5 1282 1785 240 22 187 chr5 91391500 91391762 -61145497 + RMER19C LTR ERVK 380 610 -1 5 1282 228 227 45 0 chr5 91392296 91392362 -61144897 + (CAGAGA)n Simple_repeat Simple_repeat 3 71 0 5 1282 228 156 0 22 chr5 91392302 91392348 -61144911 + GA-rich Low_complexity Low_complexity 1 45 0 5 1282 248 237 51 0 chr5 91393367 91393485 -61143774 + GA-rich Low_complexity Low_complexity 1 124 0 5 1282 195 129 0 0 chr5 91394205 91394236 -61143023 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1282 1225 189 158 32 chr5 91394236 91394547 -61142712 - MTB_Mm LTR MaLR -35 372 23 5 1282 624 275 8 0 chr5 91395012 91395143 -61142116 + RSINE1 SINE B4 17 148 -17 5 1282 531 309 0 7 chr5 91395602 91395742 -61141517 - B1F SINE Alu -9 140 2 5 1282 996 262 44 28 chr5 91396464 91396484 -61140775 - B4A SINE B4 -3 289 270 5 1282 414 0 0 0 chr5 91396484 91396530 -61140729 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1282 996 262 44 28 chr5 91396530 91396760 -61140499 - B4A SINE B4 -23 269 35 5 1282 21 57 0 0 chr5 91398490 91398525 -61138734 + AT_rich Low_complexity Low_complexity 1 35 0 5 1282 3270 28 8 6 chr5 91399018 91399384 -61137875 + L1Md_F2 LINE L1 6214 6580 -2 5 1282 2542 161 5 3 chr5 91399418 91399810 -61137449 + ORR1B1 LTR MaLR 1 393 -1 5 1282 428 200 111 0 chr5 91400177 91400267 -61136992 - B1F SINE Alu -22 127 28 5 1282 680 171 65 8 chr5 91400277 91400401 -61136858 - B1_Mur2 SINE Alu -17 132 2 5 1282 270 290 21 12 chr5 91400927 91401032 -61136227 - MLT1A1 LTR MaLR -12 396 261 5 1282 260 214 136 45 chr5 91401165 91401253 -61136006 - MLT1A1 LTR MaLR -290 118 23 5 1282 633 181 0 0 chr5 91402259 91402436 -61134823 + (TG)n Simple_repeat Simple_repeat 2 178 0 5 1282 398 79 0 16 chr5 91404117 91404181 -61133078 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 5 1282 232 324 161 56 chr5 91404981 91405161 -61132098 + LTR33A LTR ERVL 5 203 -317 5 1282 573 88 0 0 chr5 91405452 91405532 -61131727 + (GA)n Simple_repeat Simple_repeat 1 80 0 5 1282 854 318 30 11 chr5 91407524 91407791 -61129468 + B4 SINE B4 2 273 -19 5 1282 46 45 0 0 chr5 91408843 91408910 -61128349 + AT_rich Low_complexity Low_complexity 1 67 0 5 1282 243 0 0 0 chr5 91408935 91408962 -61128297 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1282 608 313 148 32 chr5 91409847 91410313 -61126946 + L1MA10 LINE L1 5309 5828 -484 6 1282 793 301 59 11 chr5 91410319 91410591 -61126668 + B4A SINE B4 6 290 -2 6 1282 1322 276 47 47 chr5 91410627 91411137 -61126122 + L1MA10 LINE L1 5825 6334 0 6 1282 334 263 10 10 chr5 91411168 91411264 -61125995 + L1M5 LINE L1 3776 3871 -2275 6 1282 780 250 354 5 chr5 91411372 91411745 -61125514 - RMER15 LTR ERVL -45 530 27 6 1282 336 103 0 0 chr5 91412107 91412165 -61125094 + (T)n Simple_repeat Simple_repeat 1 58 0 6 1282 532 91 11 11 chr5 91412165 91412254 -61125005 - RMER17B LTR ERVK -495 463 375 6 1282 270 0 0 0 chr5 91412876 91412906 -61124353 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6 1282 277 252 49 29 chr5 91413480 91413582 -61123677 - MLT1A1 LTR MaLR -4 404 301 6 1282 532 195 266 45 chr5 91414768 91414945 -61122314 + B3 SINE B2 1 216 0 6 1282 2575 95 0 15 chr5 91415088 91415419 -61121840 - ORR1A3 LTR MaLR 0 326 1 6 1282 550 231 13 53 chr5 91415442 91415604 -61121655 + B4 SINE B4 77 272 -20 6 1282 444 248 107 7 chr5 91416220 91416370 -61120889 + ORR1E LTR MaLR 33 197 -162 6 1282 224 344 44 49 chr5 91416568 91416773 -61120486 + MIRc SINE MIR 46 249 -19 6 1282 269 220 17 17 chr5 91417463 91417523 -61119736 + RMER15 LTR ERVL 1 60 -515 6 1282 31 0 0 0 chr5 91417565 91417596 -61119663 + AT_rich Low_complexity Low_complexity 1 31 0 6 1282 711 349 68 0 chr5 91417734 91418015 -61119244 + RMER15 LTR ERVL 276 575 0 6 1282 212 292 34 102 chr5 91418903 91418960 -61118299 + B1F1 SINE Alu 39 144 -1 6 1282 252 232 0 18 chr5 91418960 91419017 -61118242 + ID_B1 SINE B4 166 221 -3 6 1282 2137 208 52 58 chr5 91419075 91419371 -61117888 + RCHARR1 DNA MER1_type 360 669 -305 6 1282 941 178 0 0 chr5 91419371 91419517 -61117742 + B1_Mur2 SINE Alu 2 147 -2 6 1282 2137 208 52 58 chr5 91419517 91419839 -61117420 + RCHARR1 DNA MER1_type 670 974 0 6 1282 427 301 153 47 chr5 91420057 91420357 -61116902 - MLT1H LTR MaLR -10 539 208 6 1282 302 266 81 40 chr5 91420884 91421033 -61116226 + L1ME4a LINE L1 5970 6124 0 6 1282 38182 21 2 8 chr5 91421086 91426289 -61110970 + L1Md_T LINE L1 422 5586 -297 6 1282 8843 39 0 1 chr5 91426289 91427283 -61109976 + L1Md_T LINE L1 5587 6579 -3 6 1282 761 220 60 13 chr5 91427445 91427853 -61109406 - RMER17C LTR ERVK 0 410 77 6 1282 780 11 0 0 chr5 91427853 91427942 -61109317 + (GAGAA)n Simple_repeat Simple_repeat 1 89 0 6 1282 688 216 60 8 chr5 91427942 91428037 -61109222 - RMER17C LTR ERVK -315 95 1 6 1282 226 333 71 18 chr5 91428562 91428675 -61108584 + MLT1H LTR MaLR 115 233 -316 6 1282 272 182 36 18 chr5 91429880 91429936 -61107323 - ID SINE ID -153 71 15 6 1282 303 196 52 65 chr5 91429948 91430101 -61107158 - RMER17A2 LTR ERVK -524 382 232 6 1282 608 313 0 0 chr5 91430271 91430418 -61106841 - RSINE1 SINE B4 -18 147 1 6 1282 872 243 38 115 chr5 91430527 91430918 -61106341 - Lx9 LINE L1 -27 7617 7257 6 1282 1669 291 82 6 chr5 91430932 91431191 -61106068 - Lx9 LINE L1 -708 6936 6677 6 1282 690 13 0 0 chr5 91431191 91431270 -61105989 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1282 1669 291 82 6 chr5 91431270 91431522 -61105737 - Lx9 LINE L1 -968 6676 6388 6 1282 860 246 23 19 chr5 91431638 91431853 -61105406 - B3 SINE B2 0 216 1 6 1282 1139 313 52 24 chr5 91432326 91432869 -61104390 + L1_Mur3 LINE L1 5176 5733 -147 6 1282 261 0 0 0 chr5 91432870 91432899 -61104360 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1282 856 212 14 0 chr5 91433114 91433260 -61103999 - B1_Mur1 SINE Alu -1 148 1 6 1282 541 298 142 5 chr5 91433261 91433480 -61103779 + MER44D DNA MER2_type 457 705 0 6 1282 468 324 172 46 chr5 91434125 91434514 -61102745 + Tigger6b DNA MER2_type 1107 1544 -53 6 1282 621 295 24 78 chr5 91434953 91435159 -61102100 - B3A SINE B2 -3 195 1 6 1282 724 44 0 0 chr5 91436640 91436731 -61100528 - BC1_Mm scRNA scRNA -61 91 1 6 1282 788 253 30 0 chr5 91437238 91437404 -61099855 + B3 SINE B2 1 171 -45 6 1282 180 77 0 0 chr5 91437421 91437447 -61099812 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1282 941 155 6 12 chr5 91437461 91437624 -61099635 + RMER5 LTR ERV1 3 164 -370 6 1282 2303 179 74 56 chr5 91437725 91438276 -61098983 + RLTR31_Mm LTR ERVK 1 561 0 6 1282 361 325 9 9 chr5 91438302 91438417 -61098842 - ID_B1 SINE B4 -3 221 107 6 1282 575 337 118 20 chr5 91438464 91438903 -61098356 - L2 LINE L2 -396 3023 2542 6 1282 609 288 31 12 chr5 91439312 91439474 -61097785 + MIRb SINE MIR 37 201 -67 6 1282 231 182 0 35 chr5 91443315 91443372 -61093887 + (CAGAGA)n Simple_repeat Simple_repeat 2 56 0 6 1282 23 0 0 0 chr5 91443397 91443420 -61093839 + AT_rich Low_complexity Low_complexity 1 23 0 6 1282 322 355 9 27 chr5 91445347 91445457 -61091802 + MLT1H2 LTR MaLR 73 180 -309 6 1282 486 0 0 0 chr5 91446325 91446379 -61090880 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1282 881 176 7 0 chr5 91446489 91446776 -61090483 + (CA)n Simple_repeat Simple_repeat 1 289 0 6 1282 354 304 29 10 chr5 91447069 91447172 -61090087 - PB1 SINE Alu -11 116 12 6 1282 320 246 0 0 chr5 91447615 91447676 -61089583 - HAL1-3A_ME LINE L1 -840 2018 1958 6 1282 269 268 0 0 chr5 91448371 91448442 -61088817 + CT-rich Low_complexity Low_complexity 1 71 0 6 1282 816 164 11 8 chr5 91448742 91449010 -61088249 + (TG)n Simple_repeat Simple_repeat 1 269 0 6 1282 4473 52 5 4 chr5 91450426 91450985 -61086274 + L1Md_F2 LINE L1 6022 6581 -1 6 1282 333 0 0 0 chr5 91451061 91451098 -61086161 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1282 582 15 0 0 chr5 91451104 91451171 -61086088 + (GA)n Simple_repeat Simple_repeat 1 67 0 6 1282 576 332 97 37 chr5 91451555 91451986 -61085273 - MER31B LTR ERV1 -5 461 5 6 1282 23 33 0 0 chr5 91453592 91453622 -61083637 + AT_rich Low_complexity Low_complexity 1 30 0 6 1282 200 237 33 17 chr5 91453796 91453856 -61083403 + CT-rich Low_complexity Low_complexity 3 63 0 6 1282 741 272 34 43 chr5 91453950 91453973 -61083286 - B4 SINE B4 -60 232 212 6 1282 201 39 0 0 chr5 91453973 91453999 -61083260 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 6 1282 1807 206 29 40 chr5 91454000 91454420 -61082839 - MTD LTR MaLR -3 416 2 6 1282 854 272 34 43 chr5 91454420 91454628 -61082631 - B4A SINE B4 -80 212 1 6 1282 472 97 0 0 chr5 91454680 91454752 -61082507 + L1Md_F2 LINE L1 6499 6570 -12 6 1282 363 145 0 0 chr5 91454831 91454900 -61082359 + (TC)n Simple_repeat Simple_repeat 1 69 0 6 1282 1215 37 24 0 chr5 91454914 91455078 -61082181 + (TAGA)n Simple_repeat Simple_repeat 2 169 0 6 1282 21 0 0 0 chr5 91455937 91455958 -61081301 + AT_rich Low_complexity Low_complexity 1 21 0 6 1282 1453 6 23 0 chr5 91456725 91456901 -61080358 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 6 1282 512 126 11 0 chr5 91456901 91456988 -61080271 + (TC)n Simple_repeat Simple_repeat 1 88 0 6 1282 1334 61 0 11 chr5 91457602 91457784 -61079475 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 6 1282 271 257 86 0 chr5 91458561 91458631 -61078628 - ID4 SINE ID -1 82 7 6 1282 1051 191 34 34 chr5 91460356 91460595 -61076664 - Lx9 LINE L1 -256 7388 7150 6 1282 341 145 0 14 chr5 91460598 91460668 -61076591 + Lx9 LINE L1 7569 7637 -7 6 1282 540 0 0 0 chr5 91461538 91461598 -61075661 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 6 1282 582 86 0 0 chr5 91461604 91461685 -61075574 + (GGGGA)n Simple_repeat Simple_repeat 2 82 0 6 1282 184 59 0 56 chr5 91462350 91462386 -61074873 + (GGA)n Simple_repeat Simple_repeat 3 36 0 6 1282 614 326 125 81 chr5 91462436 91462867 -61074392 - LTR16A1 LTR ERVL -6 450 1 6 1282 187 313 0 72 chr5 91463958 91464027 -61073232 + MIRm SINE MIR 84 147 -129 6 1282 386 252 83 18 chr5 91466380 91466489 -61070770 + PB1D10 SINE Alu 2 117 0 6 1282 318 107 0 0 chr5 91466489 91466545 -61070714 + (CAA)n Simple_repeat Simple_repeat 2 57 0 6 1282 2646 163 2 0 chr5 91468202 91468632 -61068627 - Lx5 LINE L1 -198 6852 6422 6 1282 315 383 35 89 chr5 91469558 91469816 -61067443 + MLT1K LTR MaLR 162 405 -190 6 1282 404 303 99 83 chr5 91469815 91470139 -61067120 - ORR1E LTR MaLR -25 334 6 6 1282 24 32 0 0 chr5 91471206 91471237 -61066022 + AT_rich Low_complexity Low_complexity 1 31 0 6 1282 4708 32 2 0 chr5 91471533 91472090 -61065169 - L1Md_F3 LINE L1 0 6584 6027 6 1282 22 35 0 0 chr5 91472543 91472572 -61064687 + AT_rich Low_complexity Low_complexity 1 29 0 6 1282 896 315 38 26 chr5 91473336 91473598 -61063661 + MTEa-int LTR MaLR 1310 1574 -6 6 1282 262 315 10 82 chr5 91473598 91473695 -61063564 + MTEa LTR MaLR 1 90 -289 6 1282 261 0 0 0 chr5 91473761 91473790 -61063469 + (CTG)n Simple_repeat Simple_repeat 1 29 0 6 1282 324 0 0 0 chr5 91474371 91474407 -61062852 + (TAA)n Simple_repeat Simple_repeat 1 36 0 6 1282 225 250 83 48 chr5 91474468 91474552 -61062707 - MER50B LTR ERV1 -129 568 482 6 1282 4992 62 21 7 chr5 91474575 91474954 -61062305 - Lx3_Mus LINE L1 -713 6296 5910 6 1282 825 80 36 0 chr5 91474954 91475092 -61062167 + (TTTTC)n Simple_repeat Simple_repeat 2 144 0 6 1282 4992 58 1 2 chr5 91475092 91475682 -61061577 - Lx3_Mus LINE L1 -1100 5909 5320 6 1282 553 283 12 54 chr5 91476087 91476255 -61061004 - RSINE1 SINE B4 -1 164 4 6 1282 206 118 0 0 chr5 91476336 91476370 -61060889 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 1282 861 236 12 8 chr5 91476414 91476606 -61060653 - ORR1B1 LTR MaLR -1 393 165 6 1282 340 151 315 0 chr5 91476584 91476657 -61060602 - URR1B DNA MER1_type -127 98 3 6 1282 657 211 161 36 chr5 91477966 91478158 -61059101 + B3 SINE B2 1 216 0 6 1282 1928 60 0 12 chr5 91478177 91478429 -61058830 - L1_Mus1 LINE L1 -1 6566 6318 6 1282 429 20 0 0 chr5 91478524 91478574 -61058685 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1282 709 249 55 55 chr5 91478694 91478894 -61058365 + MER21B LTR ERV1 649 848 -15 7 1282 1074 93 0 0 chr5 91479392 91479542 -61057717 + L1Md_F2 LINE L1 6414 6563 -19 7 1282 216 86 0 0 chr5 91479545 91479580 -61057679 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1282 985 244 19 5 chr5 91479716 91479922 -61057337 - B3 SINE B2 -7 209 1 7 1282 1045 102 32 0 chr5 91480212 91480369 -61056890 - L1_Mus1 LINE L1 -6 6561 6400 7 1282 299 408 0 23 chr5 91480369 91480502 -61056757 - B1F2 SINE Alu -19 130 1 7 1282 592 333 85 52 chr5 91481160 91481606 -61055653 + L1MCb LINE L1 546 1006 -5039 7 1282 587 298 58 18 chr5 91482426 91482768 -61054491 + L1_Rod LINE L1 1577 1932 -3915 7 1282 962 319 41 43 chr5 91483247 91483657 -61053602 + L1_Mur3 LINE L1 2135 2555 -3325 7 1282 324 0 0 0 chr5 91483657 91483693 -61053566 + (CAA)n Simple_repeat Simple_repeat 1 36 0 7 1282 962 319 41 43 chr5 91483693 91483992 -61053267 + L1_Mur3 LINE L1 2556 2848 -3032 7 1282 1598 245 39 17 chr5 91483992 91484399 -61052860 + MTD LTR MaLR 2 417 -2 7 1282 962 319 41 43 chr5 91484399 91484452 -61052807 + L1_Mur3 LINE L1 2849 2895 -2985 7 160 38730 19 2 5 chr5 91484544 91490936 -61046323 - L1Md_A LINE L1 -1 6581 208 7 1283 341 198 12 0 chr5 91490938 91491019 -61046240 + L1M2 LINE L1 2920 3001 -3142 7 1283 349 250 55 85 chr5 91491443 91491644 -61045615 + L1MCb LINE L1 3224 3418 -3146 7 1283 265 317 0 0 chr5 91492333 91492393 -61044866 - tRNA-Ala-GCA tRNA tRNA -12 63 4 7 1283 251 297 31 15 chr5 91492335 91492400 -61044859 - ID4 SINE ID -16 67 2 7 1283 260 137 0 19 chr5 91492498 91492550 -61044709 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 7 1283 718 112 23 39 chr5 91492749 91492879 -61044380 + BC1_Mm scRNA scRNA 1 128 -24 7 1283 288 266 0 52 chr5 91493071 91493186 -61044073 + Lx7 LINE L1 7565 7673 -23 7 1283 222 313 70 58 chr5 91493791 91493947 -61043312 - L2a LINE L2 0 3426 3269 7 1283 1685 167 138 30 chr5 91494166 91494536 -61042723 + MTD LTR MaLR 3 412 -7 7 1283 208 343 32 37 chr5 91494921 91495062 -61042197 - MIR SINE MIR -79 189 45 7 1283 680 200 0 7 chr5 91495128 91495279 -61041980 + (TA)n Simple_repeat Simple_repeat 2 151 0 7 1283 262 279 29 0 chr5 91495504 91495572 -61041687 + ID4 SINE ID 5 74 -9 7 1283 230 116 0 23 chr5 91495578 91495622 -61041637 + (TAAG)n Simple_repeat Simple_repeat 1 43 0 7 1283 381 93 0 0 chr5 91496536 91496590 -61040669 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1283 276 149 0 0 chr5 91496807 91496854 -61040405 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1283 486 0 0 0 chr5 91496854 91496908 -61040351 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1283 427 289 14 54 chr5 91497346 91497369 -61039890 - ID_B1 SINE B4 -46 246 160 7 1283 616 238 0 0 chr5 91497369 91497495 -61039764 - B1F2 SINE Alu -6 143 18 7 1283 427 289 14 54 chr5 91497495 91497513 -61039746 - ID_B1 SINE B4 -46 159 81 7 1283 530 248 31 0 chr5 91498258 91498387 -61038872 + B1_Mur2 SINE Alu 1 133 -16 7 1283 531 0 0 0 chr5 91498387 91498446 -61038813 + (GA)n Simple_repeat Simple_repeat 1 59 0 7 1283 1116 73 0 0 chr5 91498446 91498597 -61038662 + (GAA)n Simple_repeat Simple_repeat 3 153 0 7 1283 24 53 0 0 chr5 91498628 91498666 -61038593 + AT_rich Low_complexity Low_complexity 1 38 0 7 1283 228 296 41 7 chr5 91498934 91499080 -61038179 - L1_Mur3 LINE L1 -732 5148 4998 7 1283 1032 125 59 12 chr5 91499092 91499262 -61037997 - RMER4B LTR ERVK 0 585 408 7 1283 773 242 144 58 chr5 91499264 91499659 -61037600 - L1M2 LINE L1 -2197 3946 3518 7 1283 28 29 0 0 chr5 91499853 91499888 -61037371 + AT_rich Low_complexity Low_complexity 1 35 0 7 1283 367 291 51 19 chr5 91500000 91500205 -61037054 + L1_Mur3 LINE L1 5411 5614 -266 1 1283 543 196 0 39 chr5 91500213 91500393 -61036866 + (CA)n Simple_repeat Simple_repeat 2 174 0 2 1283 291 234 7 14 chr5 91500440 91500587 -61036672 + (CA)n Simple_repeat Simple_repeat 2 147 0 2 1283 635 237 135 10 chr5 91500594 91500794 -61036465 + L1_Rod LINE L1 5603 5827 -20 3 1283 22 0 0 0 chr5 91501169 91501191 -61036068 + AT_rich Low_complexity Low_complexity 1 22 0 4 1283 306 107 0 0 chr5 91501963 91502019 -61035240 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1283 675 0 0 0 chr5 91504513 91504588 -61032671 + (TC)n Simple_repeat Simple_repeat 2 76 0 6 1283 917 42 0 8 chr5 91505421 91505540 -61031719 + (GAAA)n Simple_repeat Simple_repeat 4 121 0 7 1283 302 152 0 17 chr5 91506838 91506898 -61030361 + (TATG)n Simple_repeat Simple_repeat 3 61 0 8 1283 6184 74 16 5 chr5 91507584 91508442 -61028817 - RLTR13A3 LTR ERVK 0 978 111 9 1283 426 20 0 0 chr5 91508938 91508989 -61028270 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1283 362 291 0 19 chr5 91509004 91509109 -61028150 + GA-rich Low_complexity Low_complexity 2 104 0 1 1283 598 286 63 0 chr5 91509332 91509507 -61027752 - MER20 DNA MER1_type -33 186 1 1 1283 224 296 72 24 chr5 91509612 91509695 -61027564 + ID_B1 SINE B4 21 107 -117 1 1283 233 323 124 10 chr5 91510143 91510240 -61027019 + L2c LINE L2 3276 3383 -4 1 1283 252 86 0 0 chr5 91510285 91510320 -61026939 + (TTC)n Simple_repeat Simple_repeat 3 37 0 1 1283 228 275 28 28 chr5 91511603 91511674 -61025585 - BLACKJACK DNA AcHobo -1749 1195 1125 1 1283 25 65 0 0 chr5 91511942 91511988 -61025271 + AT_rich Low_complexity Low_complexity 1 46 0 1 1283 284 282 12 25 chr5 91512818 91512898 -61024361 + ID4_ SINE ID 2 80 -3 1 1283 351 154 0 0 chr5 91513841 91513906 -61023353 + CT-rich Low_complexity Low_complexity 2 66 0 1 1283 1254 174 4 9 chr5 91514011 91514237 -61023022 + URR1A DNA MER1_type 2 226 0 2 1283 209 339 65 0 chr5 91514853 91514977 -61022282 + MIR SINE MIR 93 224 -38 2 1283 572 340 20 5 chr5 91515412 91515616 -61021643 + MER2 DNA MER2_type 137 343 -2 2 1283 231 36 0 0 chr5 91516607 91516635 -61020624 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1283 619 264 121 0 chr5 91516663 91516845 -61020414 - ID_B1 SINE B4 -14 210 7 2 1283 23 0 0 0 chr5 91517063 91517086 -61020173 + AT_rich Low_complexity Low_complexity 1 23 0 2 1283 429 20 0 0 chr5 91517179 91517229 -61020030 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1283 22 35 0 0 chr5 91519329 91519358 -61017901 + AT_rich Low_complexity Low_complexity 1 29 0 2 1283 204 56 27 27 chr5 91520099 91520136 -61017123 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 2 1283 292 315 92 9 chr5 91520137 91520246 -61017013 - PB1D9 SINE Alu 0 120 3 2 1283 242 0 61 0 chr5 91520287 91520320 -61016939 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1283 194 33 67 0 chr5 91523363 91523393 -61013866 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 3 1283 815 324 14 7 chr5 91524223 91524509 -61012750 + B4A SINE B4 1 288 -4 3 1283 421 283 20 145 chr5 91524678 91524800 -61012459 + MLT1D LTR MaLR 267 382 -123 3 1283 504 0 0 0 chr5 91524800 91524856 -61012403 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1283 421 283 20 145 chr5 91524856 91524981 -61012278 + MLT1D LTR MaLR 383 483 -22 3 1283 690 246 7 0 chr5 91525738 91525876 -61011383 + B1_Mur3 SINE Alu 10 148 -1 3 1283 234 241 202 25 chr5 91526062 91526181 -61011078 - MIR SINE MIR -4 258 119 3 1283 185 381 79 110 chr5 91526494 91526786 -61010473 - L2 LINE L2 -532 2887 2605 3 1283 482 31 16 0 chr5 91527061 91527125 -61010134 + (CA)n Simple_repeat Simple_repeat 1 65 0 3 1283 378 0 0 0 chr5 91528284 91528326 -61008933 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1283 209 200 0 0 chr5 91528327 91528362 -61008897 + (CACG)n Simple_repeat Simple_repeat 1 35 0 4 1283 27 0 0 0 chr5 91528429 91528456 -61008803 + AT_rich Low_complexity Low_complexity 1 27 0 4 1283 2058 252 112 5 chr5 91528979 91529736 -61007523 + RCHARR1 DNA MER1_type 3 840 -134 4 1283 527 206 92 39 chr5 91530275 91530512 -61006747 - MT2A LTR ERVL -41 492 194 4 1283 552 15 0 0 chr5 91533992 91534057 -61003202 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1283 414 0 0 0 chr5 91534057 91534102 -61003157 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1283 1615 165 172 15 chr5 91534736 91535068 -61002191 + ORR1C2 LTR MaLR 1 384 0 4 1283 301 336 9 0 chr5 91536659 91536766 -61000493 - PB1D10 SINE Alu -6 111 4 4 1283 871 263 14 5 chr5 91536870 91537084 -61000175 - B3 SINE B2 0 216 1 4 1283 192 305 128 54 chr5 91537208 91537357 -60999902 + L2a LINE L2 3260 3419 -7 4 1283 1040 81 0 7 chr5 91537747 91537896 -60999363 + (TTTC)n Simple_repeat Simple_repeat 3 150 0 5 1283 1145 162 111 0 chr5 91537901 91538135 -60999124 + RMER12 LTR ERVK 484 743 -579 5 1283 396 0 0 0 chr5 91538148 91538192 -60999067 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 5 1283 269 110 130 52 chr5 91538216 91538293 -60998966 - RMER12 LTR ERVK -574 748 666 5 1283 439 268 111 26 chr5 91539602 91539755 -60997504 - ID_B1 SINE B4 -4 220 55 5 1283 207 125 0 0 chr5 91540729 91540769 -60996490 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 5 1283 210 205 0 0 chr5 91540769 91540800 -60996459 + polypyrimidine Low_complexity Low_complexity 4 34 0 5 1283 5100 67 27 1 chr5 91541554 91542229 -60995030 - L1_Mus3 LINE L1 -1 6637 5946 5 1283 328 233 0 0 chr5 91542234 91542307 -60994952 - L1P5 LINE L1 -374 5782 5710 5 1283 288 149 32 14 chr5 91542299 91542374 -60994885 + Lx2A LINE L1 5775 5882 -1126 5 1283 1079 89 0 6 chr5 91542602 91542760 -60994499 + (GAA)n Simple_repeat Simple_repeat 3 159 0 6 1283 233 315 53 32 chr5 91545227 91545322 -60991937 + L2a LINE L2 3319 3415 -11 6 1283 414 0 0 0 chr5 91545621 91545667 -60991592 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1283 871 303 90 16 chr5 91545687 91545932 -60991327 - B4A SINE B4 -6 286 24 6 1283 622 216 24 0 chr5 91546405 91546530 -60990729 + RSINE1 SINE B4 3 130 -35 6 1283 1181 48 0 33 chr5 91546594 91546746 -60990513 + B1_Mm SINE Alu 1 147 0 6 1283 376 298 165 17 chr5 91546988 91547449 -60989810 - L1ME2 LINE L1 -63 6101 5573 6 1283 405 0 0 0 chr5 91547714 91547759 -60989500 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1283 261 0 0 0 chr5 91548424 91548453 -60988806 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1283 1132 72 0 0 chr5 91548453 91548592 -60988667 - B1_Mus2 SINE Alu -8 139 1 6 1283 2016 208 121 61 chr5 91548821 91549344 -60987915 - RMER15 LTR ERVL 0 575 22 7 1283 5803 22 0 0 chr5 91549639 91550342 -60986917 + L1Md_A LINE L1 5916 6582 0 7 1283 730 313 112 40 chr5 91550364 91550937 -60986322 - RMER15-int LTR ERVL -225 4774 4161 7 1283 309 374 8 8 chr5 91550963 91551095 -60986164 - RMER15-int LTR ERVL -2447 2552 2421 7 1283 647 239 15 7 chr5 91551141 91551276 -60985983 - RMER15-int LTR ERVL -2682 2317 2182 7 1283 25 31 0 0 chr5 91551839 91551871 -60985388 + AT_rich Low_complexity Low_complexity 1 32 0 7 1283 449 278 68 6 chr5 91552135 91552298 -60984961 - RMER15-int LTR ERVL -3598 1401 1229 7 1283 530 384 14 4 chr5 91552485 91552762 -60984497 - RMER15-int LTR ERVL -4463 536 257 7 1283 287 336 0 9 chr5 91552897 91553005 -60984254 + Lx9 LINE L1 7205 7311 -333 7 1283 727 317 103 2 chr5 91554031 91554430 -60982829 + MER90a LTR ERV1 66 498 -116 7 1283 243 331 99 88 chr5 91554846 91555028 -60982231 - MLT1J LTR MaLR -298 214 31 7 1283 252 59 0 0 chr5 91555075 91555109 -60982150 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 7 1283 2129 95 49 0 chr5 91555417 91555722 -60981537 - ORR1A2 LTR MaLR 0 327 8 7 1283 9271 137 152 12 chr5 91555723 91557445 -60979814 - ORR1A2-int LTR MaLR 0 1963 1 7 1283 1967 103 44 88 chr5 91557446 91557787 -60979472 - ORR1A2 LTR MaLR -1 326 1 7 1283 251 348 15 81 chr5 91557916 91558113 -60979146 - MIR SINE MIR 0 262 79 7 1283 225 94 0 0 chr5 91558289 91558321 -60978938 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1283 1130 130 6 0 chr5 91558402 91558579 -60978680 - ORR1A3-int LTR MaLR -379 1584 1407 8 1283 21 57 0 0 chr5 91558787 91558822 -60978437 + AT_rich Low_complexity Low_complexity 1 35 0 8 1283 1146 75 7 0 chr5 91559195 91559341 -60977918 - B1_Mus2 SINE Alu 0 147 1 8 1283 286 347 82 51 chr5 91559603 91559761 -60977498 + RSINE1 SINE B4 3 165 0 8 1283 577 142 22 29 chr5 91560116 91560254 -60977005 + CT-rich Low_complexity Low_complexity 3 139 0 8 1283 2744 100 37 19 chr5 91560450 91560880 -60976379 - Lx LINE L1 -2 6652 6215 8 1283 596 107 0 10 chr5 91561208 91561312 -60975947 + (GAAA)n Simple_repeat Simple_repeat 1 103 0 8 1283 1358 279 169 75 chr5 91561443 91562556 -60974703 - RMER12 LTR ERVK -104 1218 1 8 1283 601 207 8 65 chr5 91562606 91562730 -60974529 - B1_Mur1 SINE Alu -12 137 21 8 1283 22 35 0 0 chr5 91563512 91563541 -60973718 + AT_rich Low_complexity Low_complexity 1 29 0 8 1283 1594 176 7 80 chr5 91565290 91565768 -60971491 + RMER17C LTR ERVK 16 439 -519 9 1283 863 219 0 66 chr5 91566042 91566238 -60971021 + B3 SINE B2 29 211 -5 9 1283 600 134 0 0 chr5 91566542 91566639 -60970620 + (GGA)n Simple_repeat Simple_repeat 2 98 0 9 1283 237 33 0 0 chr5 91566644 91566674 -60970585 + (CAG)n Simple_repeat Simple_repeat 3 32 0 9 1283 1108 50 0 24 chr5 91567249 91567414 -60969845 - L1Md_F3 LINE L1 0 6584 6424 9 1283 541 88 33 11 chr5 91567497 91567589 -60969670 + (TCCCC)n Simple_repeat Simple_repeat 5 98 0 9 1283 477 0 0 0 chr5 91567590 91567643 -60969616 + (TC)n Simple_repeat Simple_repeat 2 54 0 9 1283 225 0 0 0 chr5 91567643 91567668 -60969591 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1283 345 356 92 6 chr5 91569080 91569244 -60968015 - MIR3 SINE MIR -25 183 6 9 1283 22 35 0 0 chr5 91569313 91569342 -60967917 + AT_rich Low_complexity Low_complexity 1 29 0 9 1283 288 355 28 61 chr5 91570347 91570527 -60966732 - MIRb SINE MIR -90 178 5 1 1283 23 0 0 0 chr5 91570771 91570794 -60966465 + AT_rich Low_complexity Low_complexity 1 23 0 1 1283 187 54 54 0 chr5 91570798 91570835 -60966424 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1283 32 26 0 0 chr5 91571098 91571137 -60966122 + AT_rich Low_complexity Low_complexity 1 39 0 1 1283 242 56 0 27 chr5 91571957 91571994 -60965265 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1 1283 207 0 0 0 chr5 91572148 91572171 -60965088 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1283 221 278 10 40 chr5 91572534 91572635 -60964624 + GA-rich Low_complexity Low_complexity 2 99 0 1 1283 202 167 20 59 chr5 91572920 91572971 -60964288 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 1 1283 248 345 68 48 chr5 91574681 91574827 -60962432 - ID_B1 SINE B4 -72 152 4 1 1283 29 78 0 0 chr5 91577367 91577431 -60959828 + AT_rich Low_complexity Low_complexity 1 64 0 1 1283 387 0 0 0 chr5 91577577 91577620 -60959639 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1283 1320 99 5 15 chr5 91577631 91577835 -60959424 - Lx2 LINE L1 -273 6724 6523 1 1283 277 305 16 33 chr5 91578817 91578939 -60958320 - L2c LINE L2 -178 3209 3090 1 1283 2779 133 33 13 chr5 91580113 91580562 -60956697 + ORR1A3-int LTR MaLR 215 672 -1291 1 1283 12580 134 30 28 chr5 91580562 91582994 -60954265 - L1_Mur2 LINE L1 -674 5203 2767 1 1283 1740 163 184 26 chr5 91582993 91583657 -60953602 - L1_Mur2 LINE L1 -4274 1612 836 1 1283 478 251 88 186 chr5 91584154 91584472 -60952787 + RMER20B LTR ERVK 318 604 -23 1 1283 364 208 65 9 chr5 91585107 91585214 -60952045 + PB1D7 SINE Alu 2 114 -6 1 1283 243 0 0 0 chr5 91586205 91586232 -60951027 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1283 477 0 0 0 chr5 91586755 91586808 -60950451 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1 1283 195 69 0 0 chr5 91586905 91586934 -60950325 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1283 674 332 17 71 chr5 91586939 91587179 -60950080 - B4A SINE B4 -65 227 1 1 1283 195 42 0 0 chr5 91587263 91587287 -60949972 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1 1283 586 301 35 35 chr5 91587289 91587492 -60949767 - B3 SINE B2 -13 203 1 1 1283 266 0 29 0 chr5 91588059 91588093 -60949166 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 1 1283 369 62 0 0 chr5 91588254 91588302 -60948957 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1283 417 86 0 0 chr5 91588302 91588359 -60948900 + (TATG)n Simple_repeat Simple_repeat 2 59 0 1 1283 1202 61 0 0 chr5 91588420 91588567 -60948692 + B1_Mus2 SINE Alu 1 147 0 1 1283 2632 146 122 0 chr5 91588667 91589141 -60948118 + Lx4A LINE L1 6527 7058 0 1 1283 367 234 18 45 chr5 91590094 91590206 -60947053 + MER5A1 DNA MER1_type 58 166 0 1 1283 189 74 0 0 chr5 91591318 91591345 -60945914 + (CAAAAA)n Simple_repeat Simple_repeat 1 27 0 1 1283 585 240 0 0 chr5 91591524 91591753 -60945506 + (TG)n Simple_repeat Simple_repeat 1 229 0 1 1283 1867 151 19 22 chr5 91592219 91592579 -60944680 - RLTR15 LTR ERVK 0 359 1 1 1283 21 0 0 0 chr5 91593229 91593250 -60944009 + AT_rich Low_complexity Low_complexity 1 21 0 1 1283 231 259 12 47 chr5 91593470 91593555 -60943704 + MIRc SINE MIR 182 263 -5 1 1283 220 306 68 27 chr5 91593710 91593784 -60943475 + RSINE1 SINE B4 81 157 -8 1 1283 297 0 0 0 chr5 91593787 91593820 -60943439 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1283 751 291 4 23 chr5 91594313 91594570 -60942689 + Lx8 LINE L1 6278 6529 -944 1 1283 1310 57 0 0 chr5 91594590 91594765 -60942494 + L1_Mus2 LINE L1 6392 6566 0 1 1283 1596 273 148 23 chr5 91594781 91595551 -60941708 + Lx8 LINE L1 6603 7468 -5 1 1283 231 295 13 0 chr5 91595495 91595573 -60941686 + RMER1C Other Other 1260 1338 -4 1 1283 223 323 53 45 chr5 91595719 91595852 -60941407 - L2a LINE L2 -379 3047 2914 1 1283 217 369 80 9 chr5 91597098 91597210 -60940049 + MIRm SINE MIR 29 148 -128 1 1283 464 0 18 0 chr5 91597243 91597299 -60939960 + (TAA)n Simple_repeat Simple_repeat 1 57 0 1 1283 745 264 78 52 chr5 91600694 91600962 -60936297 - B4 SINE B4 -14 278 4 1 1283 1163 102 6 0 chr5 91600979 91601156 -60936103 + (TCCC)n Simple_repeat Simple_repeat 1 178 0 1 1283 702 199 23 0 chr5 91601159 91601335 -60935924 + CT-rich Low_complexity Low_complexity 1 180 0 1 1283 315 311 98 58 chr5 91601335 91601509 -60935750 - HAL1-3A_ME LINE L1 -419 2439 2259 1 1283 631 316 119 68 chr5 91602417 91602753 -60934506 + ORR1E LTR MaLR 1 353 -6 1 1283 750 317 28 18 chr5 91602867 91603150 -60934109 + B4A SINE B4 2 287 -5 1 1283 357 277 42 11 chr5 91603888 91603983 -60933276 - MTE-int LTR MaLR -696 884 787 1 1283 225 371 68 0 chr5 91604357 91604451 -60932808 + L2c LINE L2 3088 3192 -183 1 1283 1273 332 151 38 chr5 91604565 91604666 -60932593 + ORR1E-int LTR MaLR 391 489 -1091 1 1283 1307 102 17 0 chr5 91604666 91604843 -60932416 + B2_Mm2 SINE B2 2 181 -14 1 1283 1273 332 151 38 chr5 91604843 91605406 -60931853 + ORR1E-int LTR MaLR 490 1112 -468 1 1283 558 0 0 0 chr5 91605406 91605468 -60931791 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1283 297 0 0 0 chr5 91605468 91605500 -60931759 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1283 1273 241 54 70 chr5 91605500 91605744 -60931515 + ORR1E-int LTR MaLR 1113 1370 0 1 1283 1125 259 84 54 chr5 91605744 91606079 -60931180 + ORR1E LTR MaLR 4 348 -11 1 1283 638 267 27 0 chr5 91606153 91606299 -60930960 + RSINE1 SINE B4 3 152 -13 1 1283 1017 149 0 0 chr5 91606392 91606567 -60930692 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 1 1283 263 302 0 20 chr5 91606862 91606960 -60930299 - L1M3 LINE L1 -3836 2304 2209 1 1283 278 117 33 0 chr5 91607222 91607282 -60929977 + (TTTTTG)n Simple_repeat Simple_repeat 2 63 0 1 1283 355 95 127 0 chr5 91607833 91607896 -60929363 - HAL1-3A_ME LINE L1 -813 2045 1975 1 1283 214 254 0 31 chr5 91607900 91607965 -60929294 + (TATATG)n Simple_repeat Simple_repeat 5 67 0 1 1283 1722 245 43 3 chr5 91607970 91608343 -60928916 + MTD LTR MaLR 1 388 -31 1 1283 494 248 0 9 chr5 91608359 91608469 -60928790 - B4A SINE B4 -8 284 176 1 1283 262 354 102 46 chr5 91608960 91609176 -60928083 + ORR1E LTR MaLR 26 253 -106 1 1283 231 300 32 43 chr5 91609729 91609823 -60927436 - MLT1A0 LTR MaLR -243 122 30 1 1283 1387 308 51 6 chr5 91609880 91610389 -60926870 - Lx9 LINE L1 -289 7355 6824 1 1283 188 34 0 33 chr5 91611295 91611325 -60925934 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1283 325 262 148 48 chr5 91612053 91612430 -60924829 + L1M5 LINE L1 4477 4891 -1255 1 1283 24 0 0 0 chr5 91612487 91612511 -60924748 + AT_rich Low_complexity Low_complexity 1 24 0 1 1283 274 264 54 54 chr5 91612616 91612708 -60924551 + MTD LTR MaLR 13 104 -315 1 1283 236 333 0 0 chr5 91613097 91613163 -60924096 + B4 SINE B4 5 70 -222 1 1283 522 0 0 0 chr5 91613165 91613223 -60924036 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1283 1244 89 0 6 chr5 91613301 91613482 -60923777 + (TC)n Simple_repeat Simple_repeat 1 180 0 1 1283 385 297 41 0 chr5 91613576 91613721 -60923538 + Tigger7 DNA MER2_type 2319 2469 -22 1 1283 1015 191 75 19 chr5 91614549 91614762 -60922497 - URR1A DNA MER1_type 0 226 2 1 1283 225 0 0 0 chr5 91615114 91615139 -60922120 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1 1283 241 384 28 73 chr5 91616157 91616334 -60920925 - LTR16C LTR ERVL -60 429 261 1 1283 232 289 81 35 chr5 91616496 91616582 -60920677 + B4 SINE B4 89 178 -114 1 1283 7780 141 14 36 chr5 91616800 91618136 -60919123 + Lx4B LINE L1 5741 7047 -11 1 1283 368 125 14 0 chr5 91618139 91618211 -60919048 + Lx9 LINE L1 7571 7643 -1 1 1283 774 284 0 19 chr5 91619046 91619254 -60918005 + B3 SINE B2 1 204 -12 1 160 3577 110 3 2 chr5 91619280 91619844 -60917415 - L1_Mm LINE L1 -483 5400 4836 1 1284 213 224 0 58 chr5 91620064 91620116 -60917143 - L2a LINE L2 -4 3422 3374 1 1284 1993 190 14 19 chr5 91620263 91620633 -60916626 - MTC LTR MaLR -53 368 1 1 1284 283 218 0 0 chr5 91620807 91620862 -60916397 + MTC LTR MaLR 359 413 -8 1 1284 287 304 0 0 chr5 91622291 91622360 -60914899 - MLT1J2 LTR MaLR -38 410 342 1 1284 487 380 99 33 chr5 91622653 91623075 -60914184 - MLT1J2-int LTR MaLR -105 1282 833 1 1284 603 40 0 0 chr5 91623082 91623156 -60914103 + (TTTA)n Simple_repeat Simple_repeat 2 75 0 1 1284 504 281 20 33 chr5 91623703 91623854 -60913405 + B1F SINE Alu 1 149 0 1 1284 577 247 37 37 chr5 91626139 91626280 -60910979 + RSINE1 SINE B4 2 144 -21 1 1284 186 43 0 0 chr5 91626280 91626303 -60910956 + (TTATA)n Simple_repeat Simple_repeat 1 23 0 1 1284 872 9 0 9 chr5 91626306 91626412 -60910847 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 1 1284 577 247 37 37 chr5 91626412 91626430 -60910829 + RSINE1 SINE B4 145 162 -3 1 1284 847 307 11 18 chr5 91627066 91627345 -60909914 + B4 SINE B4 4 280 -12 1 1284 483 213 7 14 chr5 91628406 91628544 -60908715 - Lx9 LINE L1 -8 7636 7500 1 1284 192 152 0 0 chr5 91628860 91628893 -60908366 + T-rich Low_complexity Low_complexity 1 33 0 1 1284 492 18 0 0 chr5 91629328 91629385 -60907874 + (TTTC)n Simple_repeat Simple_repeat 1 57 0 1 1284 315 399 12 0 chr5 91629625 91629798 -60907461 - MIRc SINE MIR -28 240 66 1 1284 216 0 0 0 chr5 91629898 91629922 -60907337 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1284 442 289 58 0 chr5 91630029 91630150 -60907109 + RSINE1 SINE B4 3 130 -35 1 1284 3393 124 11 27 chr5 91630174 91630729 -60906530 + Lx LINE L1 6070 6615 -39 1 1284 324 286 32 21 chr5 91630731 91630824 -60906435 - RSINE1 SINE B4 -69 96 3 1 1284 21 0 0 0 chr5 91631409 91631430 -60905829 + AT_rich Low_complexity Low_complexity 1 21 0 1 1284 442 255 104 0 chr5 91632216 91632322 -60904937 - B1_Mur2 SINE Alu -32 117 1 1 1284 196 151 27 27 chr5 91632497 91632572 -60904687 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 2 1284 213 121 0 0 chr5 91632581 91632614 -60904645 + (GGGGA)n Simple_repeat Simple_repeat 2 34 0 2 1284 1413 51 0 0 chr5 91632617 91632795 -60904464 + (GGGAGA)n Simple_repeat Simple_repeat 2 179 0 2 1284 310 320 40 34 chr5 91633498 91633682 -60903577 - MIR SINE MIR -33 229 55 2 1284 224 324 29 14 chr5 91635137 91635206 -60902053 - L2b LINE L2 0 3375 3306 2 1284 300 26 0 0 chr5 91636996 91637034 -60900225 + BGLII LTR ERVK 1 38 -383 2 1284 259 140 0 66 chr5 91637017 91637078 -60900181 + BGLII LTR ERVK 365 421 0 2 1284 929 189 113 0 chr5 91637451 91637636 -60899623 + B3 SINE B2 5 210 -6 2 1284 314 158 8 16 chr5 91637997 91638113 -60899146 + GA-rich Low_complexity Low_complexity 1 115 0 2 1284 527 254 210 25 chr5 91640565 91640803 -60896456 - B4A SINE B4 -10 282 1 2 1284 252 413 0 0 chr5 91640871 91640980 -60896279 - MIRb SINE MIR -76 192 84 2 1284 193 29 29 29 chr5 91642053 91642088 -60895171 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1284 1071 105 0 0 chr5 91644215 91644358 -60892901 + B1_Mus2 SINE Alu 2 144 -3 2 1284 807 108 0 0 chr5 91644380 91644500 -60892759 + (GAAA)n Simple_repeat Simple_repeat 4 123 0 2 1284 700 221 34 126 chr5 91645076 91645314 -60891945 - B3 SINE B2 0 216 1 2 1284 1551 68 5 0 chr5 91645822 91646029 -60891230 - L1_Mus1 LINE L1 0 6567 6360 2 1284 1815 5 0 0 chr5 91646717 91646923 -60890336 - L1Md_A LINE L1 0 6582 6377 2 1284 980 9 0 0 chr5 91646923 91647030 -60890229 - U6 snRNA snRNA 0 107 1 2 1284 412 359 74 30 chr5 91647030 91647366 -60889893 - ORR1E LTR MaLR -8 351 1 2 1284 693 320 157 0 chr5 91647366 91647624 -60889635 - ORR1E-int LTR MaLR -53 1527 1226 2 1284 1259 315 64 42 chr5 91647680 91648183 -60889076 - ORR1E-int LTR MaLR -1032 548 35 2 1284 362 299 125 65 chr5 91648218 91648386 -60888873 + MTE-int LTR MaLR 589 766 -814 2 1284 539 339 37 59 chr5 91648349 91648672 -60888587 - ORR1E LTR MaLR -42 317 2 2 1284 228 311 196 54 chr5 91648676 91648992 -60888267 - ORR1D2 LTR MaLR -1 369 9 2 1284 21 0 0 0 chr5 91649088 91649109 -60888150 + AT_rich Low_complexity Low_complexity 1 21 0 2 1284 288 307 27 0 chr5 91649510 91649585 -60887674 - L2a LINE L2 -10 3416 3340 2 1284 217 255 58 58 chr5 91650062 91650166 -60887093 - MIR SINE MIR -43 219 116 2 1284 312 137 0 0 chr5 91650744 91650795 -60886464 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 1284 303 28 0 0 chr5 91650844 91650880 -60886379 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 2 1284 589 342 74 11 chr5 91651942 91652294 -60884965 - Lx8 LINE L1 -16 7457 7084 2 1284 1063 329 65 6 chr5 91652316 91652821 -60884438 - Lx8 LINE L1 -497 6976 6442 2 1284 462 265 54 6 chr5 91653280 91653476 -60883783 - L1M2 LINE L1 -707 5593 5390 2 1284 444 78 66 11 chr5 91653533 91653624 -60883635 + L1_Mus2 LINE L1 6471 6566 0 2 1284 1754 74 9 0 chr5 91654439 91654668 -60882591 + L1_Mus1 LINE L1 6336 6566 -1 2 1284 302 299 40 30 chr5 91654748 91654848 -60882411 + RSINE1 SINE B4 3 103 -62 2 1284 410 210 234 0 chr5 91655418 91655542 -60881717 + URR1A DNA MER1_type 1 153 -73 2 1284 1469 117 12 4 chr5 91655557 91655798 -60881461 - Lx2A LINE L1 -1 7007 6765 2 1284 3108 11 0 78 chr5 91655798 91656196 -60881063 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1284 52844 25 14 3 chr5 91656196 91662659 -60874600 - IAPEz-int LTR ERVK 0 6481 3 2 1284 3108 11 0 78 chr5 91662661 91663059 -60874200 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1284 3667 132 3 13 chr5 91663059 91663660 -60873599 - Lx2A LINE L1 -238 6770 6176 2 1284 318 222 11 69 chr5 91663688 91663775 -60873484 + URR1A DNA MER1_type 144 225 -1 2 1284 25 0 0 0 chr5 91664379 91664404 -60872855 + AT_rich Low_complexity Low_complexity 1 25 0 2 1284 709 264 160 40 chr5 91664714 91665163 -60872096 - MLT1D LTR MaLR 0 505 3 2 1284 228 319 29 0 chr5 91665612 91665681 -60871578 - RLTR20C LTR ERVK -381 153 83 2 1284 25 0 0 0 chr5 91666372 91666397 -60870862 + AT_rich Low_complexity Low_complexity 1 25 0 2 1284 934 192 290 24 chr5 91666437 91666768 -60870491 - MTD LTR MaLR 0 419 1 2 1284 744 321 90 34 chr5 91667344 91667821 -60869438 + MER90a LTR ERV1 111 614 0 2 1284 458 220 12 1 chr5 91668062 91668165 -60869094 + ORR1D2 LTR MaLR 1 104 -280 2 1284 1522 143 4 16 chr5 91668251 91668493 -60868766 - ORR1A4 LTR MaLR -90 239 1 2 1284 573 71 61 0 chr5 91669074 91669172 -60868087 + L1Md_F3 LINE L1 6480 6583 -1 2 1284 252 0 0 0 chr5 91669484 91669512 -60867747 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1284 650 225 0 42 chr5 91669666 91669810 -60867449 - B1_Mur2 SINE Alu 0 149 12 2 1284 327 49 0 0 chr5 91669908 91669949 -60867310 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 2 1284 29 0 0 0 chr5 91671989 91672018 -60865241 + AT_rich Low_complexity Low_complexity 1 29 0 2 1284 30 0 0 0 chr5 91672457 91672487 -60864772 + AT_rich Low_complexity Low_complexity 1 30 0 2 1284 235 284 39 0 chr5 91672726 91672828 -60864431 - L1M5 LINE L1 -432 5808 5703 2 1284 1008 234 5 0 chr5 91673183 91673384 -60863875 + B3 SINE B2 1 202 -14 2 1284 468 246 0 0 chr5 91673392 91673514 -60863745 + (TA)n Simple_repeat Simple_repeat 2 123 0 2 1284 295 203 17 0 chr5 91673978 91674037 -60863222 - MIRc SINE MIR -124 144 85 2 1284 1153 314 112 52 chr5 91674387 91675046 -60862213 + MTEb-int LTR MaLR 843 1578 -2 2 1284 633 229 161 65 chr5 91675050 91675391 -60861868 + MTEb LTR MaLR 3 376 -3 2 1284 449 276 86 68 chr5 91675820 91675983 -60861276 + MTE-int LTR MaLR 176 341 -1239 2 1284 680 333 106 72 chr5 91676140 91676583 -60860676 - MLT1C LTR MaLR 0 467 10 2 1284 17923 57 1 0 chr5 91677116 91680181 -60857078 - L1Md_F2 LINE L1 -12 6570 3503 2 1284 285 409 0 0 chr5 91680597 91680690 -60856569 - PB1D10 SINE Alu -13 104 12 2 1284 24 0 0 0 chr5 91680714 91680738 -60856521 + AT_rich Low_complexity Low_complexity 1 24 0 2 1284 6531 46 5 5 chr5 91682475 91683359 -60853900 - L1Md_F3 LINE L1 0 6584 5703 2 1284 402 21 0 0 chr5 91683899 91683946 -60853313 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1284 543 336 0 0 chr5 91683967 91684098 -60853161 - RSINE1 SINE B4 -34 131 1 2 1284 248 285 32 8 chr5 91684299 91684423 -60852836 - L1M1 LINE L1 -400 5900 5774 2 1284 1457 246 95 55 chr5 91684488 91684575 -60852684 - RLTR20A LTR ERVK -2 539 454 2 1284 267 54 0 0 chr5 91684575 91684612 -60852647 + (CACG)n Simple_repeat Simple_repeat 1 37 0 2 1284 1457 251 94 60 chr5 91684612 91684980 -60852279 - RLTR20A LTR ERVK -85 493 102 2 1284 2160 85 46 60 chr5 91684980 91685330 -60851929 - L1_Mus2 LINE L1 0 6566 6222 2 1284 813 300 82 114 chr5 91685330 91685468 -60851791 - RLTR20A2 LTR ERVK -405 173 2 2 1284 274 286 84 19 chr5 91686572 91686679 -60850580 + MLT1K LTR MaLR 482 595 0 2 1284 328 311 75 0 chr5 91688195 91688301 -60848958 + ID_B1 SINE B4 106 219 -5 2 1284 604 245 72 53 chr5 91688661 91688868 -60848391 + B3 SINE B2 1 211 -5 2 1284 941 119 7 0 chr5 91689207 91689358 -60847901 + (GGGA)n Simple_repeat Simple_repeat 2 153 0 2 1284 1729 178 133 22 chr5 91689452 91689769 -60847490 + MTC LTR MaLR 1 351 -68 2 1284 180 0 0 0 chr5 91689769 91689789 -60847470 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 1284 326 162 27 13 chr5 91689789 91689852 -60847407 + MTC LTR MaLR 352 416 -3 2 1284 247 344 33 0 chr5 91689999 91690089 -60847170 + MER58B DNA MER1_type 233 325 -16 2 1284 250 349 106 31 chr5 91690488 91690781 -60846478 + L2 LINE L2 2756 3070 -349 2 1284 21 0 0 0 chr5 91691484 91691505 -60845754 + AT_rich Low_complexity Low_complexity 1 21 0 2 1284 187 250 107 0 chr5 91691926 91691982 -60845277 + L3 LINE CR1 3455 3516 -973 2 1284 1035 226 96 101 chr5 91692381 91692726 -60844533 - MTE2a LTR MaLR -16 363 21 2 1284 23 54 0 0 chr5 91692913 91692950 -60844309 + AT_rich Low_complexity Low_complexity 1 37 0 2 1284 16002 149 21 8 chr5 91693480 91697034 -60840225 + L1_Mus4 LINE L1 761 4364 -1519 2 1284 3202 159 44 5 chr5 91697034 91697235 -60840024 + L1_Mus4 LINE L1 5246 5447 -436 2 1284 396 0 0 0 chr5 91697235 91697279 -60839980 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1284 7196 90 13 9 chr5 91697279 91698443 -60838816 + L1_Mus4 LINE L1 5448 6631 -5 2 1284 252 340 40 60 chr5 91698887 91698987 -60838272 + ID_B1 SINE B4 58 155 -69 2 1284 288 0 0 0 chr5 91700320 91700352 -60836907 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1284 374 81 57 23 chr5 91700375 91700463 -60836796 + (CAGA)n Simple_repeat Simple_repeat 2 92 0 2 1284 423 38 0 0 chr5 91701108 91701161 -60836098 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1284 410 0 20 0 chr5 91701292 91701342 -60835917 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1284 227 311 9 9 chr5 91701365 91701472 -60835787 + (TG)n Simple_repeat Simple_repeat 2 108 0 2 1284 378 0 0 0 chr5 91701645 91701687 -60835572 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1284 472 297 102 0 chr5 91701703 91701821 -60835438 - RSINE1 SINE B4 -29 136 7 2 1284 440 216 19 10 chr5 91701991 91702094 -60835165 + B4 SINE B4 1 104 -188 2 1284 502 239 48 17 chr5 91702094 91702251 -60835008 + Lx4B LINE L1 6763 7009 -49 2 1284 181 0 0 65 chr5 91702255 91702286 -60834973 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 2 1284 748 271 24 0 chr5 91702335 91702501 -60834758 + B4 SINE B4 123 292 0 2 1284 356 200 0 10 chr5 91702508 91702604 -60834655 + (CA)n Simple_repeat Simple_repeat 2 96 0 2 1284 486 0 0 0 chr5 91704144 91704198 -60833061 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1284 453 248 19 19 chr5 91704521 91704628 -60832631 + PB1D9 SINE Alu 5 111 -9 2 1284 235 306 120 20 chr5 91705529 91705629 -60831630 + MamRep605 Unknown Unknown 470 579 -297 2 1284 226 305 24 24 chr5 91705858 91705942 -60831317 + MamRep605 Unknown Unknown 670 753 -123 2 1284 903 252 5 0 chr5 91706893 91707103 -60830156 - B3 SINE B2 -5 211 1 2 1284 621 260 135 40 chr5 91707940 91708140 -60829119 + B4A SINE B4 74 292 0 2 1284 405 0 0 0 chr5 91708154 91708199 -60829060 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1284 1842 80 133 0 chr5 91709112 91709398 -60827861 + L1_Mus3 LINE L1 6309 6632 -6 2 1284 198 0 0 0 chr5 91709414 91709436 -60827823 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 2 1284 431 274 48 7 chr5 91710296 91710443 -60826816 + MIR SINE MIR 100 252 -10 2 1284 4793 99 26 1 chr5 91710462 91711192 -60826067 - Lx3_Mus LINE L1 -432 6577 5830 3 1284 395 145 0 0 chr5 91711185 91711247 -60826012 + Lx3A LINE L1 6568 6629 -352 3 1284 2551 111 13 13 chr5 91711247 91711627 -60825632 + Lx3A LINE L1 6587 6969 -12 3 1284 330 87 0 0 chr5 91711627 91711673 -60825586 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 3 1284 2551 111 13 13 chr5 91711673 91711685 -60825574 + Lx3A LINE L1 6970 6979 -2 3 1284 337 308 11 11 chr5 91714082 91714174 -60823085 - PB1D10 SINE Alu -11 106 15 3 1284 245 315 107 9 chr5 91715219 91715331 -60821928 + MER117 DNA MER1_type 3 125 -72 3 1284 21 107 0 0 chr5 91715855 91715939 -60821320 + AT_rich Low_complexity Low_complexity 1 84 0 3 1284 222 246 250 43 chr5 91715939 91716079 -60821180 - MIR SINE MIR -95 173 5 3 1284 261 259 0 0 chr5 91717240 91717298 -60819961 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 3 1284 637 313 11 27 chr5 91717580 91717764 -60819495 + B3A SINE B2 2 182 -16 3 1284 552 299 93 16 chr5 91718046 91718304 -60818955 + Lx8 LINE L1 6776 7053 -420 3 1284 291 236 20 101 chr5 91719023 91719122 -60818137 + Charlie9 DNA MER1_type 22 112 -2645 3 1284 860 119 17 6 chr5 91719386 91719564 -60817695 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1284 342 234 31 21 chr5 91719908 91720004 -60817255 + Charlie5 DNA MER1_type 18 114 -2510 3 1284 226 320 64 34 chr5 91720242 91720478 -60816781 - L1ME1 LINE L1 -157 6022 5780 3 1284 235 258 54 43 chr5 91720729 91720822 -60816437 - Lx7 LINE L1 -396 7300 7207 3 1284 631 267 76 46 chr5 91724652 91724915 -60812344 + Lx8 LINE L1 7174 7444 -29 3 1284 25 31 0 0 chr5 91724940 91724972 -60812287 + AT_rich Low_complexity Low_complexity 1 32 0 3 1284 387 326 8 8 chr5 91726576 91726706 -60810553 + Lx8 LINE L1 6201 6330 -1143 3 1284 877 297 146 33 chr5 91726879 91727276 -60809983 + Lx8 LINE L1 6600 7041 -432 3 1284 401 0 0 20 chr5 91729174 91729224 -60808035 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 3 1284 215 163 0 20 chr5 91729232 91729282 -60807977 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 3 1284 378 61 0 0 chr5 91730302 91730351 -60806908 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1284 460 284 27 34 chr5 91730363 91730509 -60806750 - RSINE1 SINE B4 -18 147 3 3 1284 423 160 0 0 chr5 91731142 91731217 -60806042 + (TG)n Simple_repeat Simple_repeat 1 75 0 3 1284 256 309 12 0 chr5 91731308 91731389 -60805870 + GA-rich Low_complexity Low_complexity 3 84 0 3 1284 28 29 0 0 chr5 91731542 91731577 -60805682 + AT_rich Low_complexity Low_complexity 1 35 0 3 1284 220 91 0 43 chr5 91731698 91731744 -60805515 + (TGGGGG)n Simple_repeat Simple_repeat 4 47 0 3 1284 570 15 0 0 chr5 91733176 91733243 -60804016 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1284 1243 265 92 21 chr5 91733304 91733739 -60803520 + Lx8 LINE L1 6178 6643 -830 3 1284 536 51 13 0 chr5 91733741 91733820 -60803439 - L1Md_F3 LINE L1 -14 6570 6491 3 1284 1458 349 60 29 chr5 91733811 91734255 -60803004 + Lx8 LINE L1 6631 7089 -384 3 1284 520 286 24 86 chr5 91734255 91734465 -60802794 - B3A SINE B2 -1 197 1 3 1284 1458 349 60 29 chr5 91734465 91734820 -60802439 + Lx8 LINE L1 7090 7455 -18 3 1284 538 225 7 40 chr5 91734880 91735028 -60802231 + B4A SINE B4 2 144 -148 3 1284 292 328 125 47 chr5 91735897 91736025 -60801234 - B1F1 SINE Alu -6 143 6 3 1284 215 354 141 0 chr5 91735936 91736035 -60801224 - ID_B1 SINE B4 -36 188 76 3 1284 707 298 134 22 chr5 91737366 91737947 -60799312 - L1MD1 LINE L1 -1 6632 5987 3 1284 560 309 116 30 chr5 91738657 91739058 -60798201 + L1MB3 LINE L1 5747 6179 -4 3 1284 429 309 62 81 chr5 91739062 91739383 -60797876 - L1MD1 LINE L1 -1287 5250 4936 3 1284 2100 244 82 0 chr5 91739370 91739824 -60797435 + Lx6 LINE L1 6801 7291 -169 3 1284 410 290 32 0 chr5 91739838 91739993 -60797266 - L1MD1 LINE L1 -1562 4975 4816 3 1284 306 315 20 91 chr5 91740067 91740266 -60796993 - L1MD1 LINE L1 -6248 385 201 3 1284 1070 153 74 0 chr5 91740377 91740579 -60796680 + URR1B DNA MER1_type 6 222 -3 3 1284 584 254 147 27 chr5 91741072 91741331 -60795928 - L1MC3 LINE L1 -954 6831 6542 3 1284 25 31 0 0 chr5 91741759 91741791 -60795468 + AT_rich Low_complexity Low_complexity 1 32 0 3 1284 392 270 43 0 chr5 91743397 91743512 -60793747 - L1MA5 LINE L1 -18 6282 6163 3 1284 7381 65 4 0 chr5 91743538 91744490 -60792769 - L1_Mm LINE L1 -1503 4380 3425 3 1284 6188 34 12 4 chr5 91744490 91745222 -60792037 + L1Md_F2 LINE L1 5834 6571 -11 3 1284 297 0 0 0 chr5 91745262 91745295 -60791964 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 3 1284 25 0 0 0 chr5 91745595 91745620 -60791639 + AT_rich Low_complexity Low_complexity 1 25 0 3 1284 4400 70 5 17 chr5 91745741 91746338 -60790921 - L1_Mus3 LINE L1 -6 6632 6043 3 1284 237 324 14 0 chr5 91747696 91747770 -60789489 - Arthur1A DNA Tip100 -82 95 21 3 1284 241 371 120 0 chr5 91749090 91749265 -60787994 + MLT1D-int LTR MaLR 669 864 -523 3 1284 1019 184 39 5 chr5 91749666 91749874 -60787385 + URR1A DNA MER1_type 8 222 -4 3 1285 21 71 0 0 chr5 91750490 91750532 -60786727 + AT_rich Low_complexity Low_complexity 1 42 0 3 1285 642 256 0 6 chr5 91750565 91750722 -60786537 + B3 SINE B2 61 216 0 3 1285 227 322 148 40 chr5 91751138 91751287 -60785972 + MLT1D LTR MaLR 339 503 -2 3 1285 404 161 67 22 chr5 91752624 91752713 -60784546 + ORR1D2 LTR MaLR 278 370 0 3 1285 794 98 0 8 chr5 91752824 91752947 -60784312 + (TGGA)n Simple_repeat Simple_repeat 4 125 0 3 1285 666 0 0 0 chr5 91753013 91753087 -60784172 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1285 339 254 23 3 chr5 91753362 91753470 -60783789 - MIRb SINE MIR -59 149 41 3 1285 450 272 250 12 chr5 91754356 91754674 -60782585 + L1MC3 LINE L1 6877 7270 -515 3 1285 360 254 0 0 chr5 91754899 91754970 -60782289 - RSINE1 SINE B4 -92 73 3 3 1285 2609 159 11 42 chr5 91755102 91755626 -60781633 - RLTR28 LTR ERVL -16 508 1 3 1285 1528 191 139 3 chr5 91756401 91756560 -60780699 + ORR1C2 LTR MaLR 1 173 -211 3 1285 413 47 22 66 chr5 91756560 91756651 -60780608 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 3 1285 1528 191 139 3 chr5 91756651 91756828 -60780431 + ORR1C2 LTR MaLR 174 383 -1 3 1285 7423 66 30 12 chr5 91756909 91757205 -60780054 - L1Md_F2 LINE L1 0 6582 6275 3 1285 2018 126 3 61 chr5 91757205 91757535 -60779724 + RLTR10E LTR ERVK 1 311 0 3 1285 7423 59 12 6 chr5 91757535 91758499 -60778760 - L1Md_F2 LINE L1 -308 6274 5306 3 1285 1003 64 14 14 chr5 91758497 91758639 -60778620 + L1Md_F2 LINE L1 5163 5304 -579 3 1285 4973 133 40 43 chr5 91758679 91759588 -60777671 - RMER17A2 LTR ERVK 0 906 1 3 1285 369 217 0 52 chr5 91759720 91759817 -60777442 - MLT1A1 LTR MaLR 0 408 317 3 1285 259 333 37 67 chr5 91759984 91760119 -60777140 - MLT1A1 LTR MaLR -253 155 25 3 1285 319 363 64 68 chr5 91760219 91760485 -60776774 - MLT1A1-int LTR MaLR -1 1408 1144 3 1285 1978 33 37 0 chr5 91760508 91760750 -60776509 + L1Md_F3 LINE L1 5836 6086 -496 3 1285 2848 51 3 8 chr5 91760754 91761112 -60776147 + L1Md_F3 LINE L1 6216 6571 -13 3 1285 198 0 0 0 chr5 91761120 91761142 -60776117 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1285 550 327 131 26 chr5 91761162 91761579 -60775680 - MLT1A1-int LTR MaLR -315 1094 633 3 1285 1646 216 59 5 chr5 91761579 91761969 -60775290 + MTD LTR MaLR 1 411 -8 3 1285 299 324 83 61 chr5 91762275 91762505 -60774754 - MLT1A1-int LTR MaLR -1161 248 14 3 1285 213 65 0 0 chr5 91762708 91762739 -60774520 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1285 904 263 5 0 chr5 91762739 91762944 -60774315 - B3 SINE B2 -10 206 1 3 1285 597 258 20 44 chr5 91763149 91763352 -60773907 + RMER15 LTR ERVL 22 219 -356 3 1285 849 197 25 55 chr5 91763341 91763540 -60773719 + RMER15 LTR ERVL 383 575 0 3 1285 306 192 51 0 chr5 91764608 91764686 -60772573 + (CA)n Simple_repeat Simple_repeat 2 83 0 3 1285 444 157 54 0 chr5 91764786 91764952 -60772307 + (TG)n Simple_repeat Simple_repeat 2 176 0 3 1285 436 189 34 0 chr5 91764966 91765114 -60772145 + (TG)n Simple_repeat Simple_repeat 2 154 0 3 1285 501 269 146 8 chr5 91765135 91765382 -60771877 - B4 SINE B4 -11 281 1 3 1285 181 215 57 71 chr5 91766243 91766313 -60770946 - MIRb SINE MIR -160 108 40 3 1285 3619 214 147 40 chr5 91767651 91768682 -60768577 + Lx4B LINE L1 5916 7056 -2 3 1285 245 70 47 0 chr5 91768683 91768726 -60768533 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 3 1285 866 312 130 48 chr5 91771007 91771592 -60765667 - Tigger7 DNA MER2_type -1858 633 1 3 1285 2055 242 71 10 chr5 91771851 91772347 -60764912 - Lx2B LINE L1 -3 6997 6472 3 1285 494 278 45 0 chr5 91772347 91772480 -60764779 + B3A SINE B2 42 180 -18 3 1285 1458 157 15 112 chr5 91772484 91772822 -60764437 + ORR1A4 LTR MaLR 1 305 -24 3 1285 542 303 21 0 chr5 91772842 91772987 -60764272 + B4 SINE B4 77 224 -68 3 1285 494 293 35 14 chr5 91775740 91775882 -60761377 - B1_Mur1 SINE Alu 0 149 5 3 1285 1016 146 6 0 chr5 91776824 91777002 -60760257 + CT-rich Low_complexity Low_complexity 2 180 0 3 1285 8581 77 4 11 chr5 91777051 91779059 -60758200 - L1_Mus1 LINE L1 0 6567 4575 3 1285 22 0 0 0 chr5 91779208 91779230 -60758029 + AT_rich Low_complexity Low_complexity 1 22 0 3 1285 1486 90 4 69 chr5 91779890 91780164 -60757095 - Lx2A1 LINE L1 -880 6128 5873 3 1285 2165 110 36 6 chr5 91780162 91780435 -60756824 + Lx2A1 LINE L1 6587 6868 -140 3 1285 363 105 0 0 chr5 91780435 91780492 -60756767 + (TGAG)n Simple_repeat Simple_repeat 2 58 0 3 1285 2165 110 36 6 chr5 91780492 91780583 -60756676 + Lx2A1 LINE L1 6869 6962 -46 3 1285 21 0 0 0 chr5 91781553 91781574 -60755685 + AT_rich Low_complexity Low_complexity 1 21 0 3 1285 21 0 0 0 chr5 91782103 91782124 -60755135 + AT_rich Low_complexity Low_complexity 1 21 0 3 1285 198 0 0 0 chr5 91782270 91782292 -60754967 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1285 274 269 26 9 chr5 91782534 91782650 -60754609 - Lx7 LINE L1 -1 7695 7578 3 1285 483 134 0 0 chr5 91782650 91782732 -60754527 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1285 1315 241 40 27 chr5 91782770 91783141 -60754118 - Lx7 LINE L1 -346 7350 6975 3 1285 231 173 0 0 chr5 91783200 91783252 -60754007 + (CAAT)n Simple_repeat Simple_repeat 1 52 0 3 1285 329 286 67 0 chr5 91784228 91784333 -60752926 - Ricksha_c DNA MuDR -1575 473 362 3 1285 549 158 0 0 chr5 91784853 91784954 -60752305 + CT-rich Low_complexity Low_complexity 1 101 0 3 1285 243 360 0 0 chr5 91785501 91785590 -60751669 + (TG)n Simple_repeat Simple_repeat 1 89 0 3 1285 576 0 0 0 chr5 91785954 91786018 -60751241 + (TA)n Simple_repeat Simple_repeat 2 65 0 3 1285 249 277 167 71 chr5 91787646 91787844 -60749415 + MIRb SINE MIR 52 268 0 3 1285 910 162 0 7 chr5 91787886 91788029 -60749230 - B1_Mur4 SINE Alu -6 144 3 3 1285 282 180 0 0 chr5 91789281 91789342 -60747917 + (CACCAT)n Simple_repeat Simple_repeat 1 61 0 4 1285 248 409 24 0 chr5 91790463 91790590 -60746669 - MIR3 SINE MIR -17 191 62 4 1285 29 28 0 0 chr5 91790892 91790928 -60746331 + AT_rich Low_complexity Low_complexity 1 36 0 4 1285 199 175 35 0 chr5 91791223 91791280 -60745979 + GA-rich Low_complexity Low_complexity 3 61 0 4 1285 577 214 0 33 chr5 91791890 91792011 -60745248 + B1_Mur2 SINE Alu 1 117 -32 4 1285 435 19 0 0 chr5 91792011 91792063 -60745196 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1285 261 0 0 0 chr5 91792168 91792197 -60745062 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1285 982 203 33 14 chr5 91793103 91793313 -60743946 + B3 SINE B2 1 214 -2 4 1285 207 176 0 0 chr5 91794240 91794274 -60742985 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1285 411 344 22 122 chr5 91795651 91795787 -60741472 - MER2 DNA MER2_type -9 336 226 4 1285 1025 109 0 0 chr5 91795787 91795925 -60741334 - B1_Mus1 SINE Alu -9 139 2 4 1285 411 344 22 122 chr5 91795925 91796010 -60741249 - MER2 DNA MER2_type -120 225 137 4 1285 255 355 135 11 chr5 91796491 91796676 -60740583 + MIRc SINE MIR 17 224 -44 4 1285 328 324 61 56 chr5 91798488 91798668 -60738591 - B3 SINE B2 -34 182 2 4 1285 552 309 0 7 chr5 91798533 91798670 -60738589 - RSINE1 SINE B4 -29 136 1 4 1285 755 100 0 16 chr5 91799807 91799929 -60737330 - Lx LINE L1 -3 6651 6532 4 1285 385 312 169 11 chr5 91799966 91800144 -60737115 + MIR SINE MIR 14 219 -43 4 1285 50 51 0 0 chr5 91800263 91800341 -60736918 + AT_rich Low_complexity Low_complexity 1 78 0 4 1285 297 289 212 9 chr5 91800498 91800823 -60736436 + L1MB1 LINE L1 2127 2517 -3623 4 1285 770 331 119 35 chr5 91800837 91801232 -60736027 - MER70B LTR ERVL -145 433 6 4 1285 769 292 80 49 chr5 91801237 91801986 -60735273 + L1MB1 LINE L1 2518 3326 -2814 4 1285 1142 269 79 16 chr5 91801995 91802539 -60734720 + L1MB1 LINE L1 3850 4427 -1713 4 1285 347 300 75 29 chr5 91802536 91802842 -60734417 + L1MB1 LINE L1 4593 4912 -1228 4 1285 602 165 55 0 chr5 91802846 91802955 -60734304 + Lx9 LINE L1 6744 6858 -786 4 1285 669 152 22 7 chr5 91802940 91803060 -60734199 + Lx9 LINE L1 7357 7479 -165 4 1285 180 111 0 0 chr5 91803060 91803087 -60734172 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1285 669 165 105 1 chr5 91803087 91803215 -60734044 + Lx9 LINE L1 7480 7642 -2 4 1285 1425 241 254 17 chr5 91803236 91803591 -60733668 + L1MB1 LINE L1 4932 5388 -780 4 1285 381 70 0 0 chr5 91803591 91803648 -60733611 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1285 1425 279 85 19 chr5 91803648 91804377 -60732882 + L1MB1 LINE L1 5389 6158 -10 4 1285 1179 264 30 22 chr5 91805182 91805553 -60731706 + MTEa LTR MaLR 5 378 -1 4 1285 5299 112 10 39 chr5 91806188 91807076 -60730183 + RMER17D LTR ERVK 26 887 -2 4 1285 220 357 14 28 chr5 91807411 91807483 -60729776 - ID4 SINE ID -11 72 2 4 1285 25 31 0 0 chr5 91807699 91807731 -60729528 + AT_rich Low_complexity Low_complexity 1 32 0 4 1285 381 43 0 0 chr5 91807782 91807829 -60729430 + (TAG)n Simple_repeat Simple_repeat 1 47 0 4 1285 343 269 39 0 chr5 91807835 91807913 -60729346 - ID4 SINE ID 0 83 3 4 1285 1141 61 0 0 chr5 91808176 91808324 -60728935 + L1_Mus1 LINE L1 6420 6567 0 4 1285 224 326 33 44 chr5 91808893 91808913 -60728346 + B4A SINE B4 5 21 -271 4 1285 414 0 0 0 chr5 91808913 91808959 -60728300 + (TA)n Simple_repeat Simple_repeat 2 47 0 4 1285 224 326 33 44 chr5 91808959 91809028 -60728231 + B4A SINE B4 22 93 -199 4 1285 302 0 26 0 chr5 91809132 91809170 -60728089 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1285 486 0 0 0 chr5 91809170 91809223 -60728036 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 1285 201 121 0 0 chr5 91809380 91809413 -60727846 + (TGG)n Simple_repeat Simple_repeat 1 33 0 4 1285 737 306 50 32 chr5 91810011 91810294 -60726965 + B4A SINE B4 5 292 0 4 1285 251 221 12 0 chr5 91810339 91810425 -60726834 + GA-rich Low_complexity Low_complexity 4 90 0 4 1285 205 380 101 38 chr5 91811143 91811381 -60725878 - L2b LINE L2 -6 3369 3117 4 1285 331 310 66 112 chr5 91811795 91811991 -60725268 - MER20 DNA MER1_type -5 214 28 4 1285 189 360 17 35 chr5 91812698 91812813 -60724446 - L3 LINE CR1 -262 4227 4115 4 1285 243 0 0 0 chr5 91814312 91814339 -60722920 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1285 2391 80 0 0 chr5 91814449 91814760 -60722499 + Lx3_Mus LINE L1 6699 7009 0 4 1285 627 306 0 0 chr5 91816633 91816819 -60720440 + Lx7 LINE L1 6595 6780 -916 4 1285 7514 18 0 0 chr5 91816818 91817721 -60719538 + L1Md_T LINE L1 4684 5586 -297 4 1285 8992 7 0 0 chr5 91817721 91818717 -60718542 + L1Md_T LINE L1 5587 6582 0 4 1285 972 333 66 12 chr5 91818737 91819253 -60718006 + Lx7 LINE L1 6771 7314 -382 4 1285 255 345 55 83 chr5 91820543 91820796 -60716463 - L3 LINE CR1 -32 4457 4212 4 1285 332 250 24 12 chr5 91821122 91821207 -60716052 - PB1D9 SINE Alu 0 120 35 4 1285 263 313 48 21 chr5 91821293 91821479 -60715780 + L1M3 LINE L1 5645 5835 -354 4 1285 300 260 13 25 chr5 91821491 91821570 -60715689 - L1MD3 LINE L1 -605 7390 7313 4 1285 575 259 9 0 chr5 91822424 91822540 -60714719 + PB1D10 SINE Alu 1 117 0 4 1285 4800 30 0 0 chr5 91823304 91823861 -60713398 - L1Md_T LINE L1 -1 6581 6025 4 1285 1909 21 0 0 chr5 91823861 91824094 -60713165 + L1Md_T LINE L1 5805 6037 -545 4 1285 441 0 0 0 chr5 91824383 91824432 -60712827 + (TC)n Simple_repeat Simple_repeat 2 50 0 4 1285 223 325 89 8 chr5 91825726 91825850 -60711409 - MIR SINE MIR -122 140 7 4 1285 272 258 182 0 chr5 91827196 91827262 -60709997 - ID4_ SINE ID 0 83 6 4 1285 778 163 6 27 chr5 91828348 91828531 -60708728 + A-rich Low_complexity Low_complexity 2 180 0 4 1285 232 234 102 66 chr5 91829004 91829141 -60708118 - MIRm SINE MIR -123 153 12 4 1285 432 0 0 0 chr5 91829226 91829274 -60707985 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1285 193 145 16 16 chr5 91829793 91829856 -60707403 + T-rich Low_complexity Low_complexity 2 64 0 4 1285 309 26 0 0 chr5 91831067 91831105 -60706154 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1285 584 14 14 0 chr5 91831116 91831189 -60706070 + (GA)n Simple_repeat Simple_repeat 1 74 0 4 1285 579 15 0 0 chr5 91831234 91831302 -60705957 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1285 261 0 0 0 chr5 91832321 91832350 -60704909 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4 1285 225 261 244 22 chr5 91832527 91832617 -60704642 + PB1D10 SINE Alu 1 110 -7 4 1285 543 16 0 0 chr5 91832738 91832802 -60704457 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1285 222 360 0 11 chr5 91833837 91833927 -60703332 + CT-rich Low_complexity Low_complexity 1 89 0 4 1285 181 189 27 0 chr5 91835121 91835158 -60702101 + MIR SINE MIR 106 143 -65 4 1285 903 336 90 72 chr5 91835276 91836201 -60701058 - MLT1I-int LTR MaLR -639 1096 57 4 1285 1149 248 100 6 chr5 91836505 91836834 -60700425 + MTE2b LTR MaLR 3 362 -17 4 1285 945 237 24 9 chr5 91837109 91837322 -60699937 + B3 SINE B2 1 216 0 4 1285 271 262 114 61 chr5 91837594 91837708 -60699551 + MTEa LTR MaLR 3 122 -257 4 1285 373 307 112 15 chr5 91837859 91838064 -60699195 + MT2A LTR ERVL 307 531 -2 4 1285 272 167 33 16 chr5 91838217 91838278 -60698981 - B4 SINE B4 -150 142 81 4 1285 256 302 33 80 chr5 91838278 91838429 -60698830 - L1MC3 LINE L1 -558 7227 7084 4 1285 225 312 12 0 chr5 91838674 91838754 -60698505 - MLT1I LTR MaLR -30 381 301 4 1285 234 152 0 0 chr5 91838934 91838993 -60698266 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1285 32 0 0 0 chr5 91839060 91839092 -60698167 + AT_rich Low_complexity Low_complexity 1 32 0 4 1285 3968 46 0 77 chr5 91840134 91840680 -60696579 - L1_Mus2 LINE L1 0 6566 6063 4 1285 8983 12 0 1 chr5 91840722 91841719 -60695540 + L1Md_A LINE L1 5587 6582 0 4 1285 384 22 0 0 chr5 91842315 91842360 -60694899 + (TAAAA)n Simple_repeat Simple_repeat 1 45 0 4 1285 279 307 87 67 chr5 91843186 91843336 -60693923 + RSINE1 SINE B4 1 153 -12 4 1285 419 305 15 22 chr5 91843820 91843954 -60693305 - B3A SINE B2 -61 137 5 4 1285 438 304 86 120 chr5 91844301 91844653 -60692606 + ORR1E LTR MaLR 1 379 0 4 1285 486 0 0 0 chr5 91844752 91844806 -60692453 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1285 39248 8 0 1 chr5 91845995 91851994 -60685265 + L1Md_A LINE L1 1 5586 -297 4 1285 9181 4 0 0 chr5 91851994 91852990 -60684269 + L1Md_A LINE L1 5587 6582 0 4 1285 198 368 90 36 chr5 91853649 91853872 -60683387 + L3 LINE CR1 4128 4362 -127 4 1285 735 69 0 0 chr5 91854384 91854486 -60682773 + (TC)n Simple_repeat Simple_repeat 2 103 0 4 1285 467 259 43 0 chr5 91854906 91855022 -60682237 - RSINE1 SINE B4 0 165 45 4 1285 416 285 68 27 chr5 91855804 91856024 -60681235 + L2 LINE L2 2642 2870 -549 4 1285 585 0 0 0 chr5 91856047 91856112 -60681147 + (TC)n Simple_repeat Simple_repeat 2 66 0 4 1285 738 91 0 0 chr5 91856112 91856232 -60681027 + (TG)n Simple_repeat Simple_repeat 2 122 0 4 1285 1170 88 0 0 chr5 91856586 91856734 -60680525 + B1_Mus1 SINE Alu 1 148 0 4 1285 219 256 23 47 chr5 91857565 91857651 -60679608 + A-rich Low_complexity Low_complexity 2 85 0 4 1285 576 0 0 0 chr5 91858395 91858459 -60678800 + (GA)n Simple_repeat Simple_repeat 1 64 0 4 1285 576 257 85 32 chr5 91858794 91858983 -60678276 + MLT2B4 LTR ERVL 3 201 -355 4 1285 214 352 44 0 chr5 91859076 91859107 -60678152 + B4A SINE B4 51 85 -207 4 1285 356 291 0 0 chr5 91859107 91859186 -60678073 + PB1D7 SINE Alu 1 79 -41 4 1285 591 51 0 0 chr5 91859227 91859306 -60677953 + (CA)n Simple_repeat Simple_repeat 1 79 0 4 1285 528 274 61 122 chr5 91859376 91859621 -60677638 + MLT2B4 LTR ERVL 337 566 -1 4 1285 478 115 7 14 chr5 91860721 91860826 -60676433 + ORR1B1 LTR MaLR 282 394 0 4 1285 319 252 70 44 chr5 91861014 91861172 -60676087 + Lx7 LINE L1 7535 7696 0 4 1285 280 161 91 80 chr5 91861205 91861293 -60675966 + MurSatRep1 Unknown Unknown 177 265 -1872 4 1285 733 147 58 117 chr5 91862633 91862856 -60674403 + RMER17D2 LTR ERVK 598 807 -2 4 1285 5007 183 63 4 chr5 91863303 91863454 -60673805 - RMER1A Other Other 0 1030 873 4 1285 342 0 0 0 chr5 91863454 91863492 -60673767 + (CTA)n Simple_repeat Simple_repeat 3 40 0 4 1285 5007 223 43 6 chr5 91863492 91864661 -60672598 - RMER1A Other Other -158 872 11 4 1285 693 36 0 0 chr5 91864816 91864900 -60672359 + (GTTTG)n Simple_repeat Simple_repeat 2 85 0 5 1285 21 0 0 0 chr5 91865093 91865114 -60672145 + AT_rich Low_complexity Low_complexity 1 21 0 5 1285 957 300 18 21 chr5 91865130 91865413 -60671846 + B4A SINE B4 4 285 -7 5 1285 847 93 7 14 chr5 91865413 91865554 -60671705 + (GGGAGA)n Simple_repeat Simple_repeat 4 143 0 5 1285 22 35 0 0 chr5 91866117 91866146 -60671113 + AT_rich Low_complexity Low_complexity 1 29 0 5 1285 358 275 101 0 chr5 91866195 91866304 -60670955 - MLT1K LTR MaLR -306 289 170 5 1285 1959 268 167 52 chr5 91866458 91867402 -60669857 + Lx8 LINE L1 6414 7466 -7 5 1285 334 311 81 16 chr5 91867463 91867587 -60669672 + ID_B1 SINE B4 93 224 0 5 1285 714 0 0 0 chr5 91867675 91867809 -60669450 + L1Md_T LINE L1 6498 6582 0 5 1285 287 65 0 21 chr5 91868522 91868569 -60668690 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 5 1285 462 315 179 13 chr5 91868647 91868965 -60668294 + MLT1A LTR MaLR 4 374 0 5 1285 918 288 34 48 chr5 91869555 91869909 -60667350 - MER90a LTR ERV1 -1 613 265 5 1285 37 52 0 0 chr5 91870259 91870317 -60666942 + AT_rich Low_complexity Low_complexity 1 58 0 5 1285 1235 275 47 3 chr5 91870407 91870750 -60666509 + ORR1D2 LTR MaLR 1 358 -12 5 1285 245 321 57 21 chr5 91870882 91871022 -60666237 - MLT1A1 LTR MaLR -4 404 260 5 1285 1622 244 50 11 chr5 91871778 91872179 -60665080 + MTD LTR MaLR 1 405 -14 5 1285 34 24 0 0 chr5 91872373 91872414 -60664845 + AT_rich Low_complexity Low_complexity 1 41 0 5 1285 354 200 12 12 chr5 91872506 91872587 -60664672 + MTC LTR MaLR 5 85 -336 5 1285 520 299 12 37 chr5 91873325 91873488 -60663771 - RSINE1 SINE B4 -4 161 3 5 1285 270 0 0 0 chr5 91874608 91874638 -60662621 + (TC)n Simple_repeat Simple_repeat 2 31 0 5 1285 249 57 0 0 chr5 91874638 91874672 -60662587 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1285 477 186 0 0 chr5 91874672 91874796 -60662463 + CT-rich Low_complexity Low_complexity 2 125 0 5 1285 439 230 87 8 chr5 91875464 91875591 -60661668 - MTD LTR MaLR 0 419 283 5 1285 271 253 0 42 chr5 91876327 91876422 -60660837 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 1285 413 236 195 71 chr5 91876677 91876846 -60660413 - B3A SINE B2 -8 190 1 5 1285 198 336 56 9 chr5 91876993 91877101 -60660158 + L2a LINE L2 2831 2943 -476 5 1285 333 312 156 25 chr5 91877353 91877629 -60659630 + L2a LINE L2 3115 3426 0 5 1285 335 327 0 0 chr5 91879663 91879773 -60657486 - B1F1 SINE Alu -21 128 19 5 1285 363 192 0 0 chr5 91880029 91880102 -60657157 + CT-rich Low_complexity Low_complexity 4 76 0 5 1285 1188 79 0 17 chr5 91880109 91880290 -60656969 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 1285 399 269 40 54 chr5 91880318 91880467 -60656792 - RSINE1 SINE B4 -14 151 5 5 1285 345 100 0 0 chr5 91881037 91881087 -60656172 + (A)n Simple_repeat Simple_repeat 1 50 0 5 1286 209 312 214 29 chr5 91881879 91882159 -60655100 - L2 LINE L2 -406 3013 2682 5 1286 1156 62 7 0 chr5 91882190 91882335 -60654924 + B1_Mus2 SINE Alu 2 147 0 5 1286 1166 74 0 0 chr5 91882447 91882595 -60654664 + B1_Mus1 SINE Alu 1 148 0 5 1286 543 31 0 0 chr5 91882941 91883006 -60654253 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 5 1286 917 81 7 20 chr5 91883018 91883170 -60654089 + (GGGGA)n Simple_repeat Simple_repeat 2 151 0 5 1286 333 47 0 0 chr5 91883174 91883217 -60654042 + (TA)n Simple_repeat Simple_repeat 1 43 0 5 1286 297 0 0 0 chr5 91883217 91883249 -60654010 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1286 848 148 36 24 chr5 91883259 91883425 -60653834 + RMER17A2 LTR ERVK 1 168 -738 5 1286 778 71 9 0 chr5 91884058 91884171 -60653088 - URR1B DNA MER1_type -1 224 111 5 1286 240 35 0 0 chr5 91886306 91886335 -60650924 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1286 642 214 35 0 chr5 91887141 91887286 -60649973 - MER46C DNA MER2_type -103 235 86 5 1286 195 162 0 0 chr5 91887970 91888007 -60649252 + (ATTG)n Simple_repeat Simple_repeat 3 39 0 5 1286 204 125 0 0 chr5 91889094 91889126 -60648133 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1286 481 243 219 6 chr5 91891014 91891192 -60646067 - B3 SINE B2 0 216 1 5 1286 327 285 97 68 chr5 91891470 91891707 -60645552 - Charlie14a DNA MER1_type -919 245 2 5 1286 3913 52 6 0 chr5 91892248 91892731 -60644528 - L1Md_F2 LINE L1 0 6582 6097 5 1286 261 0 43 43 chr5 91893237 91893283 -60643976 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 5 1286 286 297 109 0 chr5 91894017 91894182 -60643077 - L1M5 LINE L1 -364 5760 5578 5 1286 287 146 18 0 chr5 91894486 91894541 -60642718 + (CAGG)n Simple_repeat Simple_repeat 1 56 0 5 1286 549 119 0 0 chr5 91894824 91894925 -60642334 + (GA)n Simple_repeat Simple_repeat 2 102 0 5 1286 1150 320 29 32 chr5 91895379 91895756 -60641503 - MLT1B LTR MaLR -3 387 12 5 1286 436 258 0 31 chr5 91896149 91896245 -60641014 + B1_Mus2 SINE Alu 3 95 -52 5 1286 35 41 0 0 chr5 91896569 91896618 -60640641 + AT_rich Low_complexity Low_complexity 1 49 0 5 1286 654 49 0 0 chr5 91896684 91896766 -60640493 + (TCTCCC)n Simple_repeat Simple_repeat 3 84 0 5 1286 923 228 75 0 chr5 91896852 91897080 -60640179 - Lx7 LINE L1 -389 7307 7063 5 1286 1141 260 3 42 chr5 91897086 91897375 -60639884 + Lx7 LINE L1 6455 6732 -964 5 1286 221 195 81 0 chr5 91898049 91898136 -60639123 + (TA)n Simple_repeat Simple_repeat 2 95 0 5 1286 18111 154 29 20 chr5 91898251 91899118 -60638141 + L1_Mur2 LINE L1 1240 2094 -3783 5 1286 6982 63 8 1 chr5 91899118 91900005 -60637254 - RLTR13B1 LTR ERVK 0 893 1 5 1286 18111 154 29 20 chr5 91900005 91902598 -60634661 + L1_Mur2 LINE L1 2095 4735 -1142 5 1286 190 0 32 32 chr5 91902598 91902629 -60634630 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1286 18111 154 29 20 chr5 91902629 91902810 -60634449 + L1_Mur2 LINE L1 4736 4915 -962 5 1286 2742 177 28 9 chr5 91902815 91903520 -60633739 + Lx4B LINE L1 6253 6989 -11 5 1286 33 0 0 0 chr5 91903520 91903553 -60633706 + AT_rich Low_complexity Low_complexity 1 33 0 5 1286 261 221 276 11 chr5 91904557 91904644 -60632615 + PB1D9 SINE Alu 1 110 -10 5 1286 23 54 0 0 chr5 91904644 91904681 -60632578 + AT_rich Low_complexity Low_complexity 1 37 0 5 1286 253 132 0 0 chr5 91905447 91905485 -60631774 - RMER15 LTR ERVL -537 38 1 5 1286 240 328 134 0 chr5 91906106 91906240 -60631019 + LTR88b LTR Gypsy? 4 155 -682 5 1286 32 43 0 0 chr5 91906332 91906378 -60630881 + AT_rich Low_complexity Low_complexity 1 46 0 5 1286 243 364 107 24 chr5 91906780 91906949 -60630310 + MLT1K LTR MaLR 63 245 -350 5 1286 234 233 0 0 chr5 91907071 91907114 -60630145 + G-rich Low_complexity Low_complexity 4 46 0 5 1286 257 333 37 31 chr5 91907478 91907639 -60629620 + LTR37B LTR ERV1 280 441 -27 5 1286 207 0 0 0 chr5 91907967 91907990 -60629269 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1286 468 0 0 0 chr5 91907990 91908041 -60629218 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1286 289 414 56 24 chr5 91908298 91908548 -60628711 + LTR78 LTR ERV1 420 677 -627 5 1286 207 88 0 0 chr5 91908810 91908844 -60628415 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1286 1007 35 45 34 chr5 91909093 91909269 -60627990 + (GGGAGA)n Simple_repeat Simple_repeat 1 178 0 5 1286 939 104 17 0 chr5 91910023 91910196 -60627063 + (TC)n Simple_repeat Simple_repeat 1 176 0 5 1286 270 0 0 0 chr5 91910873 91910903 -60626356 + (CAA)n Simple_repeat Simple_repeat 2 31 0 5 1286 2165 123 13 4 chr5 91911427 91911764 -60625495 + MTC LTR MaLR 53 384 -37 5 1286 2080 254 62 9 chr5 91911793 91912377 -60624882 - Lx7 LINE L1 -1083 6613 5999 5 1286 598 85 9 19 chr5 91912384 91912492 -60624767 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 5 1286 592 176 21 7 chr5 91912498 91912641 -60624618 + (CATATA)n Simple_repeat Simple_repeat 4 148 0 5 1286 8974 158 63 10 chr5 91912654 91913786 -60623473 - Lx7 LINE L1 -1726 5970 4762 5 1286 428 0 0 19 chr5 91913786 91913839 -60623420 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1286 8974 155 64 10 chr5 91913839 91914556 -60622703 - Lx7 LINE L1 -1119 4761 4014 5 1286 224 365 70 0 chr5 91914710 91914825 -60622434 + B1F SINE Alu 27 149 0 5 1286 252 0 0 0 chr5 91916235 91916263 -60620996 + (TC)n Simple_repeat Simple_repeat 1 28 0 5 1286 672 36 0 0 chr5 91916263 91916345 -60620914 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 1286 188 270 95 0 chr5 91916613 91916676 -60620583 + L3 LINE CR1 4283 4351 -138 5 1286 241 363 90 68 chr5 91916974 91917240 -60620019 + LTR85b LTR Gypsy? 513 784 0 5 1286 1934 147 59 70 chr5 91918009 91918061 -60619198 - ORR1C1 LTR MaLR -8 370 312 5 1286 369 0 0 0 chr5 91918061 91918102 -60619157 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1286 1934 150 59 67 chr5 91918102 91918435 -60618824 - ORR1C1 LTR MaLR -67 311 2 5 1286 270 296 106 0 chr5 91919565 91919697 -60617562 - MER89 LTR ERV1 -259 300 155 5 1286 248 346 36 29 chr5 91920042 91920182 -60617077 + ORR1E LTR MaLR 1 141 -218 5 1286 227 255 20 0 chr5 91920210 91920261 -60616998 + CT-rich Low_complexity Low_complexity 3 54 0 5 1286 1952 300 33 15 chr5 91920441 91921163 -60616096 - MER89-int LTR ERV1 -321 6480 5746 5 1286 4024 200 26 11 chr5 91922182 91923000 -60614259 + Lx5 LINE L1 6221 7050 0 5 1286 789 305 45 38 chr5 91923025 91923291 -60613968 + B4 SINE B4 3 270 -22 5 1286 452 72 14 0 chr5 91923291 91923360 -60613899 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1286 601 216 293 0 chr5 91923378 91923545 -60613714 + B3 SINE B2 1 216 0 5 1286 194 91 30 0 chr5 91923560 91923593 -60613666 + (GGA)n Simple_repeat Simple_repeat 3 36 0 5 1286 628 261 105 8 chr5 91923983 91924230 -60613029 - L1MA4 LINE L1 -368 5932 5662 5 1286 1585 282 15 15 chr5 91924251 91924705 -60612554 - Lx6 LINE L1 -27 7433 6980 5 1286 10603 140 122 16 chr5 91924897 91925220 -60612039 + Lx5 LINE L1 3526 3848 -2029 6 1286 186 43 0 0 chr5 91925220 91925243 -60612016 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1286 10603 140 89 25 chr5 91925243 91928211 -60609048 + Lx5 LINE L1 3849 7047 -3 6 1286 206 343 102 0 chr5 91928692 91928800 -60608459 + L2c LINE L2 3036 3154 -233 6 1286 238 247 89 25 chr5 91928925 91929004 -60608255 + L2a LINE L2 3343 3426 0 6 1286 1614 204 108 26 chr5 91929075 91929453 -60607806 - MTD LTR MaLR -10 409 1 6 1286 319 316 114 70 chr5 91929461 91929662 -60607597 - MLT1J2 LTR MaLR 0 448 235 6 1286 534 31 0 0 chr5 91930735 91930799 -60606460 + (TCTCCC)n Simple_repeat Simple_repeat 3 66 0 6 1286 304 359 9 19 chr5 91930935 91931040 -60606219 + RSINE1 SINE B4 5 108 -57 6 1286 285 128 0 0 chr5 91931055 91931102 -60606157 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1286 768 214 0 0 chr5 91931828 91931912 -60605347 + Lx6 LINE L1 6506 6561 -489 6 1286 408 20 0 0 chr5 91931912 91931961 -60605298 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1286 2021 236 41 4 chr5 91931961 91932475 -60604784 + Lx6 LINE L1 6913 7445 -15 6 1286 1197 124 5 5 chr5 91933981 91934184 -60603075 + Lx2A1 LINE L1 6796 6998 -10 6 1286 394 318 101 61 chr5 91934799 91935027 -60602232 + Cheshire DNA MER1_type 127 363 -2057 6 1286 274 291 49 54 chr5 91935319 91935504 -60601755 + Cheshire DNA MER1_type 428 611 -1809 6 1286 256 220 0 0 chr5 91935553 91935603 -60601656 + Cheshire DNA MER1_type 703 752 -1668 6 1286 486 252 28 14 chr5 91935604 91935749 -60601510 + ORR1E LTR MaLR 8 154 -205 6 1286 544 316 70 22 chr5 91935924 91936154 -60601105 + Cheshire DNA MER1_type 749 989 -1431 6 1286 366 81 127 16 chr5 91936174 91936237 -60601022 - MTC LTR MaLR 0 421 352 6 1286 1995 164 13 66 chr5 91936398 91936777 -60600482 - MTC LTR MaLR -62 359 1 6 1286 459 284 67 11 chr5 91936784 91936962 -60600297 + Cheshire DNA MER1_type 1001 1188 -1232 6 1286 417 333 14 14 chr5 91936977 91937120 -60600139 + RSINE1 SINE B4 11 153 -12 6 1286 1516 329 57 57 chr5 91937195 91938075 -60599184 + Charlie1a DNA MER1_type 162 1041 -414 6 1286 244 253 25 62 chr5 91938077 91938157 -60599102 + Charlie1a DNA MER1_type 1379 1455 0 6 1286 1969 127 23 23 chr5 91938272 91938618 -60598641 + RMER6C LTR ERVK 1 346 -344 6 1286 567 281 111 4 chr5 91939390 91939615 -60597644 + MLT1B-int LTR MaLR 1121 1369 -2 6 1286 561 304 91 75 chr5 91939618 91939938 -60597321 + MLT1B LTR MaLR 3 327 -63 6 1286 562 220 25 8 chr5 91939944 91940063 -60597196 + B1F1 SINE Alu 21 141 -8 6 1286 279 342 0 0 chr5 91940076 91940149 -60597110 + ID4 SINE ID 1 73 -10 6 1286 1305 216 54 65 chr5 91940160 91940546 -60596713 + RLTR14 LTR ERV1 1 382 0 6 1286 768 74 0 0 chr5 91940552 91940660 -60596599 + (GAAA)n Simple_repeat Simple_repeat 3 110 0 6 1286 501 131 0 0 chr5 91940661 91940745 -60596514 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 6 1286 423 332 117 87 chr5 91941368 91941932 -60595327 - MER34A1 LTR ERV1 -2 585 5 6 1286 257 238 56 56 chr5 91942173 91942262 -60594997 + MLT1I LTR MaLR 32 120 -291 6 1286 2205 232 29 8 chr5 91942329 91942854 -60594405 + RCHARR1 DNA MER1_type 112 647 -327 6 1286 736 246 98 30 chr5 91942969 91943068 -60594191 + RCHARR1 DNA MER1_type 660 764 -210 6 1286 2146 166 228 29 chr5 91943068 91943578 -60593681 + RMER19C LTR ERVK 1 611 0 6 1286 736 246 98 30 chr5 91943578 91943742 -60593517 + RCHARR1 DNA MER1_type 765 941 -33 6 1286 4901 103 41 6 chr5 91944353 91945057 -60592202 + Lx3A LINE L1 6229 6957 -24 6 1286 28 29 0 0 chr5 91945057 91945092 -60592167 + AT_rich Low_complexity Low_complexity 1 35 0 6 1286 243 155 27 40 chr5 91945990 91946064 -60591195 + (TTA)n Simple_repeat Simple_repeat 1 73 0 6 1286 246 116 0 0 chr5 91948433 91948476 -60588783 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 6 1286 326 169 0 38 chr5 91948567 91948647 -60588612 + (ATTG)n Simple_repeat Simple_repeat 2 78 0 6 1286 743 94 17 51 chr5 91949886 91950124 -60587135 + (TCTCTG)n Simple_repeat Simple_repeat 1 229 0 6 1286 573 129 0 0 chr5 91950122 91950215 -60587044 + (TG)n Simple_repeat Simple_repeat 2 94 0 6 1286 337 182 0 0 chr5 91951902 91951968 -60585291 + MER53 DNA hAT 5 70 -123 6 1286 3998 79 6 2 chr5 91953149 91953668 -60583591 - L1_Mus2 LINE L1 0 6566 6046 6 1286 2309 41 61 0 chr5 91953668 91953963 -60583296 + L1_Mus2 LINE L1 5739 6051 -515 6 1286 424 330 60 14 chr5 91953970 91954185 -60583074 - MLT1A0 LTR MaLR -2 363 139 6 1286 213 299 156 0 chr5 91954220 91954297 -60582962 + B4A SINE B4 2 90 -202 6 1286 226 219 0 59 chr5 91954869 91954937 -60582322 + L2 LINE L2 2672 2735 -684 6 1286 378 0 0 0 chr5 91955175 91955217 -60582042 + (CACCC)n Simple_repeat Simple_repeat 1 42 0 6 1286 2809 52 24 0 chr5 91956508 91956890 -60580369 - RLTR10A LTR ERVK -20 391 1 6 1286 414 0 0 0 chr5 91957782 91957828 -60579431 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1286 357 299 44 22 chr5 91958629 91958766 -60578493 - MIRb SINE MIR -73 195 56 6 1286 298 323 151 22 chr5 91959037 91959262 -60577997 + L1MC4 LINE L1 6786 7039 -1003 6 1286 306 311 53 97 chr5 91959302 91959601 -60577658 + L1MC5 LINE L1 6947 7232 -729 6 1286 2194 76 75 56 chr5 91959612 91959933 -60577326 - ORR1A2 LTR MaLR 0 327 1 6 1286 242 351 20 13 chr5 91960398 91960551 -60576708 + L1MC5 LINE L1 7731 7884 -77 6 1286 1107 236 81 28 chr5 91960593 91961083 -60576176 + Lx7 LINE L1 7154 7696 0 6 1286 242 228 130 0 chr5 91961497 91961577 -60575682 - MIR SINE MIR -133 135 43 6 1286 311 252 67 42 chr5 91962301 91962421 -60574838 + ID_B1 SINE B4 102 224 0 6 1286 427 221 17 42 chr5 91962964 91963082 -60574177 - MLT1C LTR MaLR 0 467 353 6 1286 7029 55 14 11 chr5 91963240 91964137 -60573122 - L1Md_F2 LINE L1 -1 6581 5682 6 1286 464 206 0 8 chr5 91964748 91964880 -60572379 + (TG)n Simple_repeat Simple_repeat 1 131 0 6 1286 342 61 0 0 chr5 91966271 91966320 -60570939 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 6 1286 378 107 0 0 chr5 91966415 91966471 -60570788 + (TCC)n Simple_repeat Simple_repeat 2 57 0 6 1286 1106 176 14 28 chr5 91966494 91966710 -60570549 - ID_B1 SINE B4 -10 214 2 6 1286 428 0 19 0 chr5 91966731 91966783 -60570476 + (CCTAA)n Simple_repeat Simple_repeat 1 53 0 6 1286 29 47 0 0 chr5 91967073 91967116 -60570143 + AT_rich Low_complexity Low_complexity 1 43 0 6 1286 252 0 0 0 chr5 91967199 91967227 -60570032 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1286 416 192 90 10 chr5 91968544 91968644 -60568615 - MTD LTR MaLR -11 410 303 6 1286 3285 93 45 42 chr5 91968644 91969150 -60568109 + Lx LINE L1 6140 6647 -7 6 1286 247 177 16 16 chr5 91969461 91969473 -60567786 + polypurine Low_complexity Low_complexity 3 14 0 6 1286 1247 79 6 0 chr5 91969473 91969650 -60567609 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 6 1286 247 177 16 16 chr5 91969650 91969700 -60567559 + GA-rich Low_complexity Low_complexity 15 65 0 6 1286 616 213 8 8 chr5 91969704 91969827 -60567432 - MTD LTR MaLR -146 273 151 6 1286 303 210 0 0 chr5 91969838 91969900 -60567359 - MTD LTR MaLR -342 79 18 6 1286 222 37 0 0 chr5 91971332 91971359 -60565900 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1286 612 235 7 49 chr5 91971359 91971502 -60565757 - B1_Mur2 SINE Alu -10 139 3 6 1286 12803 22 0 0 chr5 91971534 91973672 -60563587 - L1Md_A LINE L1 -1 6581 4444 6 1286 3786 209 87 8 chr5 91973838 91974008 -60563251 - Lx9 LINE L1 0 7644 7436 6 1286 351 0 0 0 chr5 91974008 91974047 -60563212 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1286 3786 209 87 8 chr5 91974047 91974757 -60562502 - Lx9 LINE L1 -209 7435 6696 6 1286 457 216 104 1 chr5 91974846 91974954 -60562305 + Lx9 LINE L1 6743 6848 -796 6 1286 1006 295 87 19 chr5 91975692 91976162 -60561097 + RMER5 LTR ERV1 33 534 0 6 1286 220 158 0 0 chr5 91976163 91976201 -60561058 + B1F SINE Alu 92 129 -20 6 1286 310 74 37 0 chr5 91976251 91976305 -60560954 + (GA)n Simple_repeat Simple_repeat 2 57 0 6 1286 436 284 33 13 chr5 91977740 91977890 -60559369 + MER3 DNA MER1_type 1 153 -56 6 1286 730 206 7 7 chr5 91977976 91978118 -60559141 + B1_Mur4 SINE Alu 1 142 -8 6 1286 262 291 43 92 chr5 91977987 91978150 -60559109 + B4A SINE B4 95 249 -43 6 1286 225 0 0 0 chr5 91978156 91978181 -60559078 + (CAGAGA)n Simple_repeat Simple_repeat 6 30 0 6 1286 270 0 0 0 chr5 91978228 91978258 -60559001 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1286 558 0 0 0 chr5 91978260 91978322 -60558937 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1286 224 287 51 77 chr5 91978356 91978473 -60558786 - MIRm SINE MIR -126 150 37 6 1286 1270 305 109 80 chr5 91978924 91980034 -60557225 + L1M4c LINE L1 32 1175 -5209 6 1286 5525 38 1 0 chr5 91980034 91980685 -60556574 + L1Md_T LINE L1 5930 6581 -1 6 1286 1270 305 109 80 chr5 91980685 91980716 -60556543 + L1M4c LINE L1 1176 1206 -5178 6 1286 351 96 0 0 chr5 91980717 91980769 -60556490 + (GGA)n Simple_repeat Simple_repeat 3 54 0 6 1286 24 53 0 0 chr5 91980840 91980878 -60556381 + AT_rich Low_complexity Low_complexity 1 38 0 6 1286 3514 73 2 0 chr5 91980986 91981440 -60555819 + L1_Mus1 LINE L1 6112 6566 -1 6 1286 761 281 194 40 chr5 91981447 91981948 -60555311 + L1M4c LINE L1 1144 1721 -4663 6 1286 451 239 34 8 chr5 91981978 91982096 -60555163 - MT2A LTR ERVL -326 207 87 6 1286 585 180 0 111 chr5 91982088 91982232 -60555027 - MT2A LTR ERVL -405 128 1 6 1286 1884 259 39 2 chr5 91982512 91983026 -60554233 - MT2A LTR ERVL 0 533 1 6 1286 2523 129 12 35 chr5 91983134 91983537 -60553722 + ORR1B1 LTR MaLR 1 394 0 6 1286 1032 272 145 19 chr5 91983560 91984130 -60553129 + L1M4c LINE L1 1927 2573 -3809 6 1286 466 286 97 12 chr5 91984101 91984349 -60552910 + L1MB3 LINE L1 5888 6156 -27 6 1286 261 139 0 0 chr5 91984413 91984456 -60552803 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1286 1046 282 120 11 chr5 91984464 91984905 -60552354 + L1MB4 LINE L1 5683 6171 -9 6 1286 234 0 0 0 chr5 91986237 91986263 -60550996 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1286 1190 153 9 23 chr5 91986406 91986626 -60550633 + URR1B DNA MER1_type 6 222 -3 6 1286 760 269 118 19 chr5 91987121 91987485 -60549774 + L1MD3 LINE L1 7595 7994 -1 6 1286 734 224 9 86 chr5 91987587 91987797 -60549462 - MTEa LTR MaLR -181 198 5 6 1286 795 329 13 60 chr5 91987802 91988200 -60549059 - MER31B LTR ERV1 -87 379 1 6 1286 913 167 23 47 chr5 91990545 91990759 -60546500 - ORR1D1 LTR MaLR 0 374 166 6 1286 531 167 8 31 chr5 91990759 91990889 -60546370 + GA-rich Low_complexity Low_complexity 1 127 0 6 1286 812 161 81 29 chr5 91990889 91991062 -60546197 - ORR1D1 LTR MaLR -192 182 1 6 1286 404 266 177 35 chr5 91991173 91991399 -60545860 - ORR1E LTR MaLR -5 354 97 6 1286 2136 136 66 29 chr5 91992406 91992786 -60544473 - ORR1B1 LTR MaLR 0 394 1 7 1286 1723 211 212 41 chr5 91993727 91994294 -60542965 - Lx9 LINE L1 0 7644 6981 7 1286 762 297 60 38 chr5 91995673 91995991 -60541268 - RMER15 LTR ERVL 0 575 251 7 1286 1822 127 87 6 chr5 91996416 91996748 -60540511 - ORR1B2 LTR MaLR -8 359 1 7 1286 355 208 17 0 chr5 91996893 91997013 -60540246 + GA-rich Low_complexity Low_complexity 2 123 0 7 1286 2708 147 47 54 chr5 91997448 91997981 -60539278 - RLTR24 LTR ERV1 0 529 1 7 1286 198 301 31 41 chr5 91998193 91998290 -60538969 - MIRb SINE MIR -80 188 93 7 1286 295 272 11 23 chr5 91998962 91999139 -60538120 + (TATG)n Simple_repeat Simple_repeat 1 175 0 7 1286 180 235 39 0 chr5 92001168 92001219 -60536040 - L3 LINE CR1 -1216 3273 3221 1 1286 1746 214 38 35 chr5 92001441 92001641 -60535618 - ORR1D1 LTR MaLR 0 374 177 2 1286 351 0 0 0 chr5 92001641 92001680 -60535579 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1286 1746 214 38 35 chr5 92001680 92001852 -60535407 - ORR1D1 LTR MaLR -198 176 2 2 1286 1841 289 111 49 chr5 92001940 92002740 -60534519 - MER21B LTR ERV1 -12 851 2 4 1286 276 53 0 0 chr5 92003230 92003268 -60533991 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1286 341 58 0 19 chr5 92004137 92004190 -60533069 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1286 26 0 0 0 chr5 92004502 92004528 -60532731 + AT_rich Low_complexity Low_complexity 1 26 0 7 1286 209 337 29 10 chr5 92005696 92005798 -60531461 - MIR SINE MIR -104 158 55 8 1286 704 296 0 18 chr5 92008255 92008479 -60528780 + B4 SINE B4 1 220 -72 9 1286 319 289 35 17 chr5 92008989 92009105 -60528154 - MLT1A0 LTR MaLR 0 365 248 1 1286 581 195 32 56 chr5 92010023 92010133 -60527126 + B1_Mur1 SINE Alu 28 136 -13 1 1286 189 0 0 0 chr5 92010133 92010154 -60527105 + (TAA)n Simple_repeat Simple_repeat 1 21 0 1 1286 581 195 32 56 chr5 92010154 92010168 -60527091 + B1_Mur1 SINE Alu 137 149 0 1 1286 696 161 0 0 chr5 92010385 92010509 -60526750 + CT-rich Low_complexity Low_complexity 1 124 0 1 1286 914 297 17 107 chr5 92010630 92011033 -60526226 + MTEa LTR MaLR 1 367 -12 1 1287 1970 88 0 7 chr5 92013147 92013423 -60523836 + L1_Mus4 LINE L1 6363 6636 0 1 1287 268 121 17 33 chr5 92013445 92013505 -60523754 + A-rich Low_complexity Low_complexity 2 60 0 1 1287 1365 200 67 55 chr5 92013507 92013970 -60523289 + RLTR20B3 LTR ERVK 35 509 -68 1 1287 202 214 0 41 chr5 92014454 92014527 -60522732 + A-rich Low_complexity Low_complexity 4 73 0 1 1287 703 208 54 48 chr5 92014835 92015002 -60522257 + ID_B1 SINE B4 2 169 -55 1 1287 333 118 0 0 chr5 92015013 92015064 -60522195 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1287 23 33 0 0 chr5 92015064 92015094 -60522165 + AT_rich Low_complexity Low_complexity 1 30 0 2 1287 186 405 13 26 chr5 92015825 92015977 -60521282 + MIRb SINE MIR 90 239 -29 2 1287 384 270 0 0 chr5 92016034 92016182 -60521077 + (TG)n Simple_repeat Simple_repeat 1 148 0 2 1287 304 100 60 0 chr5 92016197 92016247 -60521012 - HAL1-3A_ME LINE L1 -831 2027 1975 2 1287 1868 173 30 112 chr5 92017335 92018165 -60519094 + RMER6C LTR ERVK 1 690 0 2 1287 374 298 8 24 chr5 92018410 92018534 -60518725 + MLT1A LTR MaLR 39 160 -214 2 1287 281 294 0 34 chr5 92018540 92018628 -60518631 + PB1D10 SINE Alu 33 117 0 2 1287 383 252 110 14 chr5 92018696 92018862 -60518397 + MLT1A LTR MaLR 195 374 -16 2 1287 1242 123 17 0 chr5 92019368 92019547 -60517712 + B2_Mm2 SINE B2 5 186 -9 2 1287 914 170 108 44 chr5 92019973 92020176 -60517083 - B3 SINE B2 0 216 1 2 1287 884 295 128 8 chr5 92020398 92020598 -60516661 + L1MB3 LINE L1 5571 5781 -402 3 1287 1136 43 12 12 chr5 92020598 92020763 -60516496 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 3 1287 884 295 128 8 chr5 92020763 92021054 -60516205 + L1MB3 LINE L1 5782 6121 -62 3 1287 431 178 69 78 chr5 92021291 92021407 -60515852 + PB1D9 SINE Alu 1 115 -5 3 1287 262 0 0 50 chr5 92022469 92022509 -60514750 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 3 1287 356 159 51 29 chr5 92022618 92022793 -60514466 + (TA)n Simple_repeat Simple_repeat 1 179 0 3 1287 197 96 95 11 chr5 92024311 92024406 -60512853 + (TA)n Simple_repeat Simple_repeat 1 103 0 3 1287 190 155 82 0 chr5 92024458 92024555 -60512704 + (TA)n Simple_repeat Simple_repeat 1 105 0 3 1287 438 274 73 15 chr5 92026968 92027172 -60510087 + MER33 DNA MER1_type 9 224 -100 3 1287 305 337 59 10 chr5 92027224 92027452 -60509807 + L2a LINE L2 2849 3090 -297 3 1287 543 16 0 0 chr5 92029115 92029179 -60508080 + (TC)n Simple_repeat Simple_repeat 1 64 0 3 1287 225 0 0 0 chr5 92029838 92029863 -60507396 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3 1287 1006 187 67 5 chr5 92029867 92030061 -60507198 - B3 SINE B2 -10 206 1 4 1287 243 312 31 0 chr5 92030647 92030742 -60506517 + L2a LINE L2 3273 3421 -5 3 1287 862 141 6 11 chr5 92033475 92033655 -60503604 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1287 895 238 80 18 chr5 92033660 92033934 -60503325 - B4A SINE B4 0 292 2 4 1287 1239 223 21 21 chr5 92034334 92034613 -60502646 + B4 SINE B4 4 282 -10 4 1287 25 0 0 0 chr5 92034679 92034704 -60502555 + AT_rich Low_complexity Low_complexity 1 25 0 4 1287 212 114 22 22 chr5 92035021 92035066 -60502193 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 4 1287 1900 148 48 6 chr5 92035240 92035574 -60501685 + ORR1B1 LTR MaLR 47 394 0 4 1287 347 244 13 0 chr5 92036551 92036629 -60500630 + MIR SINE MIR 111 189 -73 4 1287 252 0 0 0 chr5 92037986 92038014 -60499245 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1287 336 330 42 8 chr5 92038197 92038316 -60498943 + MIRb SINE MIR 25 147 -121 4 1287 369 0 0 0 chr5 92038316 92038357 -60498902 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1287 1084 136 129 48 chr5 92041128 92041337 -60495922 - URR1A DNA MER1_type 0 226 1 5 1287 255 173 27 60 chr5 92043477 92043661 -60493598 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 1287 335 60 20 0 chr5 92044023 92044073 -60493186 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1287 213 196 0 0 chr5 92044638 92044684 -60492575 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1287 243 213 124 31 chr5 92045338 92045435 -60491824 + MIR SINE MIR 87 192 -70 5 1287 269 265 30 20 chr5 92046292 92046392 -60490867 - MER5A1 DNA MER1_type -58 108 8 5 1287 339 282 67 62 chr5 92047354 92047562 -60489697 + L2a LINE L2 3027 3235 -191 5 1287 342 0 0 0 chr5 92048358 92048396 -60488863 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5 1287 285 287 94 17 chr5 92049543 92049660 -60487599 - MIRb SINE MIR -46 222 97 5 1287 713 203 6 0 chr5 92050065 92050242 -60487017 + (CA)n Simple_repeat Simple_repeat 1 178 0 6 1287 250 342 16 47 chr5 92050906 92051065 -60486194 - L2a LINE L2 -52 3374 3220 6 1287 236 320 137 18 chr5 92051075 92051301 -60485958 - L2a LINE L2 -340 3079 2827 6 1287 331 248 28 37 chr5 92053351 92053460 -60483799 + MER20 DNA MER1_type 105 212 -7 6 1287 279 0 0 0 chr5 92053501 92053532 -60483727 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1287 209 33 33 0 chr5 92054097 92054127 -60483132 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 6 1287 261 229 32 115 chr5 92054919 92055044 -60482215 + MIRc SINE MIR 103 224 -44 6 1287 486 303 7 29 chr5 92056347 92056483 -60480776 - ID_B1 SINE B4 0 224 92 6 1287 642 300 6 17 chr5 92057029 92057212 -60480047 + B3A SINE B2 39 212 -4 6 1287 730 292 22 0 chr5 92057380 92057558 -60479701 + B4A SINE B4 3 184 -108 6 1287 503 176 19 12 chr5 92057570 92057731 -60479528 + GA-rich Low_complexity Low_complexity 1 162 0 6 1287 401 221 0 95 chr5 92057731 92057836 -60479423 + B4A SINE B4 198 292 0 6 1287 570 62 25 0 chr5 92057919 92057999 -60479260 - B1_Mm SINE Alu 0 147 66 7 1287 183 197 257 40 chr5 92058155 92058229 -60479030 - L2c LINE L2 -189 3198 3109 7 1287 238 331 89 56 chr5 92058603 92058782 -60478477 - LTR88c LTR Genie? -83 779 595 7 1287 321 287 132 64 chr5 92058975 92059203 -60478056 - MIR SINE MIR 0 268 21 7 1287 414 284 159 37 chr5 92059525 92059674 -60477585 - MLT1A LTR MaLR -24 350 175 7 1287 396 0 0 0 chr5 92059674 92059718 -60477541 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1287 414 284 159 37 chr5 92059718 92059813 -60477446 - MLT1A LTR MaLR -200 174 77 7 1287 39464 5 1 0 chr5 92059987 92065556 -60471703 + L1Md_A LINE L1 16 5586 -297 7 1287 9658 1 0 0 chr5 92065556 92066552 -60470707 + L1Md_A LINE L1 5587 6582 0 7 1287 244 312 34 51 chr5 92066558 92066676 -60470583 + ORR1E LTR MaLR 79 194 -165 7 1287 193 29 59 0 chr5 92067712 92067746 -60469513 + (CAA)n Simple_repeat Simple_repeat 2 37 0 7 1287 333 0 0 0 chr5 92067986 92068023 -60469236 + (TA)n Simple_repeat Simple_repeat 2 38 0 7 1287 405 0 0 0 chr5 92068111 92068156 -60469103 + (TA)n Simple_repeat Simple_repeat 2 46 0 8 1287 261 304 0 89 chr5 92068566 92068678 -60468581 - LSU-rRNA_Hsa rRNA rRNA -1919 3116 3015 8 1287 402 74 0 0 chr5 92068831 92068885 -60468374 + (A)n Simple_repeat Simple_repeat 1 54 0 8 1287 2927 54 89 21 chr5 92068891 92069272 -60467987 - MTB_Mm LTR MaLR 0 407 1 8 1287 312 304 0 115 chr5 92069334 92069464 -60467795 + PB1D10 SINE Alu 1 115 -2 8 1287 207 0 0 0 chr5 92069838 92069861 -60467398 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1287 284 107 35 23 chr5 92070704 92070790 -60466469 + C-rich Low_complexity Low_complexity 4 90 0 8 1287 425 331 80 34 chr5 92073091 92073266 -60463993 - MLT1E3 LTR MaLR -4 620 374 8 1287 273 366 130 13 chr5 92073670 92073900 -60463359 - Charlie25 DNA MER1_type -1405 1119 863 8 1287 389 318 92 52 chr5 92074161 92074390 -60462869 + MLT1J LTR MaLR 237 474 -38 8 1287 1950 172 29 6 chr5 92074499 92074850 -60462409 + ORR1B2 LTR MaLR 1 359 -8 9 1287 380 344 83 26 chr5 92074856 92075158 -60462101 - Charlie25 DNA MER1_type -1838 686 368 8 1287 399 252 54 7 chr5 92075179 92075327 -60461932 + Lx9 LINE L1 7489 7643 -1 9 1287 330 87 0 0 chr5 92075648 92075694 -60461565 + (CATA)n Simple_repeat Simple_repeat 4 49 0 9 1287 703 295 83 23 chr5 92076232 92076496 -60460763 + MLT1A0 LTR MaLR 85 364 -1 9 1287 3150 208 57 37 chr5 92077777 92078223 -60459036 - L1_Rod LINE L1 -208 5639 5202 9 1287 255 61 0 0 chr5 92078223 92078256 -60459003 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1287 3150 208 57 37 chr5 92078256 92078668 -60458591 - L1_Rod LINE L1 -646 5201 4765 9 1287 1426 203 26 23 chr5 92078660 92078968 -60458291 + Lx9 LINE L1 5662 5970 -1674 9 1287 1001 201 190 0 chr5 92078976 92079260 -60457999 + Lx9 LINE L1 7306 7643 -1 9 1287 292 333 76 7 chr5 92079287 92079432 -60457827 + LTR33C LTR ERVL 116 270 -359 9 1287 244 270 59 129 chr5 92079402 92079657 -60457602 + MLT2E LTR ERVL 369 605 -23 9 1287 544 302 20 85 chr5 92079679 92079891 -60457368 + B3 SINE B2 4 203 -13 9 1287 393 129 0 0 chr5 92079891 92079961 -60457298 + (TA)n Simple_repeat Simple_repeat 1 70 0 1 1287 339 137 0 0 chr5 92079961 92080012 -60457247 - HAL1-3A_ME LINE L1 -846 2012 1962 1 1287 202 211 27 0 chr5 92081032 92081086 -60456173 - L2a LINE L2 -102 3324 3219 1 1287 695 308 160 40 chr5 92081093 92081573 -60455686 + LTR82B Low_complexity ERVL 4 541 -289 1 1287 396 0 0 0 chr5 92082021 92082065 -60455194 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 1 1287 195 42 0 0 chr5 92082949 92082973 -60454286 + (CAGA)n Simple_repeat Simple_repeat 1 24 0 1 1287 236 250 14 29 chr5 92083045 92083115 -60454144 - B4 SINE B4 -222 70 2 1 1287 25 31 0 0 chr5 92083115 92083147 -60454112 + AT_rich Low_complexity Low_complexity 1 32 0 1 1287 288 231 0 0 chr5 92083176 92083254 -60454005 + GA-rich Low_complexity Low_complexity 1 78 0 1 1287 522 287 17 9 chr5 92083277 92083393 -60453866 - RSINE1 SINE B4 -43 122 6 1 1287 345 252 19 19 chr5 92083530 92083635 -60453624 + MER5A1 DNA MER1_type 59 163 -3 1 1287 2229 143 60 0 chr5 92083670 92084034 -60453225 + ORR1B1 LTR MaLR 1 386 -8 1 1287 863 291 145 35 chr5 92084083 92084511 -60452748 - LTR53 LTR ERVL -37 482 8 1 1287 182 329 0 25 chr5 92084614 92084695 -60452564 + L2c LINE L2 3308 3386 -1 1 1287 302 322 78 0 chr5 92084925 92085040 -60452219 - MIRb SINE MIR -20 248 125 1 1287 622 313 73 9 chr5 92085481 92085700 -60451559 + MIR SINE MIR 3 235 -27 1 1287 261 0 0 0 chr5 92085873 92085902 -60451357 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1287 226 296 19 0 chr5 92086182 92086236 -60451023 - PB1D10 SINE Alu -51 66 12 1 1287 872 131 78 21 chr5 92086257 92086398 -60450861 - B1_Mur3 SINE Alu 0 149 1 1 1287 239 372 21 11 chr5 92086738 92086833 -60450426 - LTR33 LTR ERVL -380 135 40 1 1287 19744 107 9 20 chr5 92087407 92091295 -60445964 + L1_Mus3 LINE L1 2785 6618 -20 1 1287 244 331 62 16 chr5 92091300 92091429 -60445830 + MLT1A0 LTR MaLR 72 206 -159 1 1287 357 0 57 0 chr5 92091496 92091549 -60445710 + (CAAAAA)n Simple_repeat Simple_repeat 3 58 0 1 1287 3058 110 112 41 chr5 92091872 92092335 -60444924 + RLTR19A LTR ERVK 1 496 0 1 1287 604 297 86 50 chr5 92092405 92092685 -60444574 + B4 SINE B4 1 290 -2 1 1287 4815 64 0 3 chr5 92092764 92093373 -60443886 + L1Md_F2 LINE L1 4980 5586 -297 1 1287 8631 48 0 3 chr5 92093374 92094360 -60442899 + L1Md_F2 LINE L1 5588 6570 -12 1 1287 212 267 22 0 chr5 92094392 92094437 -60442822 + B4A SINE B4 31 76 -216 1 1287 476 301 20 7 chr5 92094988 92095135 -60442124 + B1F1 SINE Alu 1 149 0 1 1287 3424 64 2 5 chr5 92095404 92095812 -60441447 - MTB_Mm LTR MaLR 0 407 1 1 1287 871 277 115 52 chr5 92096830 92097208 -60440051 + MLT2C2 LTR ERVL 20 414 -50 1 1287 387 0 0 0 chr5 92097208 92097251 -60440008 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1287 871 277 115 52 chr5 92097251 92097291 -60439968 + MLT2C2 LTR ERVL 415 464 0 1 1287 264 278 129 26 chr5 92097475 92097630 -60439629 + LTR78 LTR ERV1 940 1110 -194 1 1287 591 271 130 10 chr5 92097713 92097899 -60439360 - B3 SINE B2 0 198 1 1 1287 22 35 0 0 chr5 92098019 92098048 -60439211 + AT_rich Low_complexity Low_complexity 1 29 0 1 1287 349 360 93 0 chr5 92099068 92099218 -60438041 - L2 LINE L2 -899 2520 2357 1 1287 1289 111 11 0 chr5 92099937 92100127 -60437132 - Lx4A LINE L1 -1140 5918 5727 1 1287 279 339 50 17 chr5 92100611 92100731 -60436528 + ORR1E LTR MaLR 1 124 -235 1 1287 309 378 36 32 chr5 92100818 92101033 -60436226 - MT2A LTR ERVL -85 448 231 1 1287 237 33 0 0 chr5 92101033 92101063 -60436196 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1287 309 378 36 32 chr5 92101063 92101096 -60436163 - MT2A LTR ERVL -303 230 199 1 1287 267 295 98 0 chr5 92101166 92101278 -60435981 - MLT2B3 LTR ERVL -431 123 1 1 1287 4386 113 82 13 chr5 92102486 92103120 -60434139 + RLTR33 LTR ERVK 1 678 0 1 1287 1453 160 47 0 chr5 92103320 92103576 -60433683 - RMER6C LTR ERVK 0 690 423 1 1287 365 100 0 0 chr5 92103579 92103629 -60433630 - RMER6C LTR ERVK -670 50 1 1 1287 681 101 0 0 chr5 92103924 92104023 -60433236 + (GGGA)n Simple_repeat Simple_repeat 4 102 0 1 1287 1782 228 12 22 chr5 92104040 92104442 -60432817 - Lx9 LINE L1 -957 6687 6295 1 1287 296 248 54 74 chr5 92104468 92104616 -60432643 - Lx9 LINE L1 -1395 6249 6105 1 1287 3255 217 83 18 chr5 92104600 92105398 -60431861 + Lx9 LINE L1 6668 7517 -127 1 1287 256 216 34 0 chr5 92105432 92105580 -60431679 + (TA)n Simple_repeat Simple_repeat 1 153 0 1 1287 578 212 20 61 chr5 92105580 92105776 -60431483 + Lx9 LINE L1 7457 7644 0 1 1287 494 241 34 95 chr5 92106510 92106657 -60430602 - B1F SINE Alu -9 140 3 1 1287 313 245 94 21 chr5 92107044 92107140 -60430119 + MTEb LTR MaLR 277 379 0 1 1287 37689 14 3 6 chr5 92109545 92115942 -60421317 - L1Md_A LINE L1 -1 6581 210 1 1287 1294 215 151 42 chr5 92116586 92116964 -60420295 + MTD LTR MaLR 1 419 0 1 1287 1215 67 0 0 chr5 92117005 92117184 -60420075 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1287 216 167 0 0 chr5 92117388 92117424 -60419835 + A-rich Low_complexity Low_complexity 2 37 0 1 1287 557 151 31 63 chr5 92117424 92117551 -60419708 - MTC LTR MaLR -30 389 267 1 1287 660 309 28 38 chr5 92117564 92117873 -60419386 - MTC LTR MaLR -116 303 5 1 1287 1202 268 181 32 chr5 92117880 92118515 -60418744 - MTC-int LTR MaLR -299 1281 625 1 1287 976 263 208 18 chr5 92118626 92118743 -60418516 - Lx9 LINE L1 -7 7637 7469 1 1287 414 0 0 0 chr5 92118743 92118789 -60418470 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1287 976 263 208 18 chr5 92118789 92119128 -60418131 - Lx9 LINE L1 -176 7468 7095 1 1287 191 114 0 22 chr5 92119468 92119513 -60417746 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 1 1287 1043 75 0 27 chr5 92119522 92119672 -60417587 + B2_Mm2 SINE B2 2 147 -48 1 1287 198 0 0 0 chr5 92119674 92119696 -60417563 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1287 357 314 57 7 chr5 92120183 92120324 -60416935 - RSINE1 SINE B4 -17 148 1 1 1287 207 0 0 0 chr5 92121231 92121254 -60416005 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1 1287 530 364 68 12 chr5 92121881 92122131 -60415128 + MLT1G3 LTR MaLR 37 300 -295 1 1287 26 0 0 0 chr5 92122860 92122886 -60414373 + GC_rich Low_complexity Low_complexity 1 26 0 1 1287 3160 36 5 10 chr5 92123648 92124037 -60413222 + L1Md_F2 LINE L1 6182 6568 -14 1 1287 198 0 0 0 chr5 92124095 92124117 -60413142 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1 1287 225 0 0 0 chr5 92124117 92124142 -60413117 + (TGG)n Simple_repeat Simple_repeat 1 25 0 1 1287 843 133 0 22 chr5 92124142 92124280 -60412979 - B1_Mur3 SINE Alu -1 148 14 1 1287 248 257 124 38 chr5 92124532 92124637 -60412622 - Tigger5 DNA MER2_type -2 2404 2291 1 1287 242 352 57 14 chr5 92124670 92124811 -60412448 - Tigger5 DNA MER2_type -2258 148 2 1 1287 1332 128 9 14 chr5 92125189 92125410 -60411849 - URR1B DNA MER1_type -5 220 1 1 1287 1326 78 0 0 chr5 92128065 92128245 -60409014 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1287 515 183 15 36 chr5 92128245 92128537 -60408722 + CT-rich Low_complexity Low_complexity 1 285 0 1 1287 180 111 0 0 chr5 92128554 92128581 -60408678 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 1 1287 1908 112 17 78 chr5 92129160 92129507 -60407752 + ORR1A3 LTR MaLR 1 326 0 1 1287 1215 287 9 23 chr5 92129514 92129857 -60407402 - Lx8 LINE L1 -939 6534 6197 1 1287 1709 297 57 42 chr5 92130041 92130731 -60406528 + Lx9 LINE L1 6726 7425 -219 1 1287 225 0 0 0 chr5 92130759 92130784 -60406475 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1287 1129 292 7 21 chr5 92130933 92131223 -60406036 + B4 SINE B4 7 292 0 1 1287 471 160 0 0 chr5 92131237 92131331 -60405928 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 1287 201 167 0 0 chr5 92131472 92131508 -60405751 + A-rich Low_complexity Low_complexity 1 36 0 1 1287 216 307 53 0 chr5 92131515 92131629 -60405630 + MIR SINE MIR 111 230 -32 1 1287 295 362 64 28 chr5 92131692 92131942 -60405317 - L3 LINE CR1 -445 4044 3786 1 1287 2682 219 55 55 chr5 92132703 92133285 -60403974 - Lx9 LINE L1 -5 7639 7051 1 1287 2465 69 31 0 chr5 92133285 92133602 -60403657 - ORR1A2 LTR MaLR 0 327 1 1 1287 2682 219 55 55 chr5 92133602 92133779 -60403480 - Lx9 LINE L1 -594 7050 6880 1 1287 1875 146 37 65 chr5 92133779 92134161 -60403098 - ORR1B1 LTR MaLR 0 394 1 1 1287 580 138 0 0 chr5 92134161 92134248 -60403011 - Lx9 LINE L1 -760 6884 6798 1 1287 393 234 0 0 chr5 92134282 92134359 -60402900 + Lx9 LINE L1 6714 6790 -854 1 1287 907 242 50 29 chr5 92134631 92134873 -60402386 + ORR1E LTR MaLR 1 247 -112 1 1287 826 316 133 50 chr5 92134897 92135340 -60401919 + MLT1G3 LTR MaLR 116 595 0 1 1287 427 339 72 72 chr5 92135373 92135567 -60401692 + B4A SINE B4 1 194 -98 1 1287 887 327 20 0 chr5 92135623 92135877 -60401382 + B4A SINE B4 30 288 -4 1 1287 189 0 0 0 chr5 92136607 92136628 -60400631 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 1 1287 384 22 0 0 chr5 92138465 92138510 -60398749 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1287 490 357 93 63 chr5 92139318 92139773 -60397486 - LTR83 LTR ERVL -85 695 212 1 1287 629 185 0 8 chr5 92139773 92139893 -60397366 + PB1D9 SINE Alu 1 119 -1 1 1287 490 357 93 63 chr5 92139893 92140038 -60397221 - LTR83 LTR ERVL -569 211 77 1 1287 219 336 35 0 chr5 92140473 92140589 -60396670 + MIRb SINE MIR 88 207 -61 1 1287 229 185 37 0 chr5 92140597 92140651 -60396608 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1287 21 36 0 0 chr5 92140651 92140679 -60396580 + AT_rich Low_complexity Low_complexity 1 28 0 1 1287 187 317 0 45 chr5 92143068 92143134 -60394125 - L2b LINE L2 -5 3370 3308 1 1288 2893 39 0 0 chr5 92143691 92144023 -60393236 + IAPEY3_LTR LTR ERVK 1 332 0 1 1288 307 0 47 0 chr5 92145834 92145877 -60391382 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1288 204 231 0 0 chr5 92146078 92146130 -60391129 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1288 212 288 36 101 chr5 92147049 92147100 -60390159 + ID SINE ID 39 80 -144 2 1288 459 237 73 15 chr5 92147100 92147237 -60390022 + B1_Mur3 SINE Alu 3 147 -2 2 1288 387 0 0 0 chr5 92147409 92147452 -60389807 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1288 396 0 0 0 chr5 92147452 92147495 -60389764 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1288 747 212 136 5 chr5 92147596 92147875 -60389384 - ORR1D2 LTR MaLR -9 361 1 2 1288 533 208 0 10 chr5 92148241 92148343 -60388916 + B1_Mur2 SINE Alu 48 148 -1 2 1288 237 33 0 0 chr5 92148343 92148373 -60388886 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1288 2156 186 84 37 chr5 92148396 92148494 -60388765 - RLTR20B2 LTR ERVK 0 560 465 2 1288 306 0 0 0 chr5 92148494 92148528 -60388731 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1288 2156 186 84 37 chr5 92148528 92148775 -60388484 - RLTR20B2 LTR ERVK -96 464 186 2 1288 561 30 0 0 chr5 92148775 92148842 -60388417 + (TC)n Simple_repeat Simple_repeat 2 68 0 2 1288 2156 186 84 37 chr5 92148842 92149030 -60388229 - RLTR20B2 LTR ERVK -375 185 4 2 1288 231 250 0 0 chr5 92150729 92150789 -60386470 + LTR50 LTR ERVL 613 672 -123 2 1288 180 77 0 0 chr5 92151063 92151089 -60386170 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1288 279 0 0 0 chr5 92152738 92152769 -60384490 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1288 23 33 0 0 chr5 92153434 92153464 -60383795 + AT_rich Low_complexity Low_complexity 1 30 0 2 1288 681 219 168 6 chr5 92153465 92153644 -60383615 - B3 SINE B2 -8 208 1 2 1288 398 200 25 25 chr5 92153663 92153781 -60383478 - Lx7 LINE L1 0 7696 7579 2 1288 911 245 46 38 chr5 92153790 92154238 -60383021 - RMER2 LTR ERV1 -14 553 3 2 1288 1481 174 69 108 chr5 92154244 92154681 -60382578 - Lx7 LINE L1 -116 7580 7161 2 1288 1056 183 9 52 chr5 92155824 92156055 -60381204 + URR1B DNA MER1_type 1 221 -4 2 1288 287 294 69 20 chr5 92156251 92156400 -60380859 - MIRc SINE MIR -46 222 63 2 1288 376 281 145 22 chr5 92156433 92156702 -60380557 + RMER5 LTR ERV1 85 386 -148 2 1288 1059 212 19 14 chr5 92157239 92157454 -60379805 - B3 SINE B2 0 216 1 2 1288 3511 25 2 0 chr5 92157648 92158043 -60379216 - MTA_Mm LTR MaLR 0 396 1 2 1288 258 176 0 0 chr5 92158840 92158891 -60378368 + G-rich Low_complexity Low_complexity 5 55 0 2 1288 4863 46 2 3 chr5 92159226 92159817 -60377442 - L1Md_F2 LINE L1 0 6582 5993 2 1288 249 286 163 0 chr5 92160063 92160210 -60377049 + MIR SINE MIR 38 208 -54 2 1288 1653 141 54 43 chr5 92160710 92161081 -60376178 + RMER10A LTR ERVL 68 442 0 2 1288 562 284 214 13 chr5 92161131 92161434 -60375825 + MLT1J LTR MaLR 33 396 -116 2 1288 378 340 0 7 chr5 92161669 92161811 -60375448 + (TG)n Simple_repeat Simple_repeat 2 142 0 2 1288 583 306 54 62 chr5 92161870 92162128 -60375131 - ORR1E LTR MaLR -103 256 1 2 1288 257 267 66 37 chr5 92162764 92162900 -60374359 + YREP_Mm Unknown Unknown 158 297 -1515 2 1288 530 241 52 0 chr5 92162783 92162899 -60374360 - ID_B1 SINE B4 -1 223 102 2 1288 407 276 96 7 chr5 92162899 92162918 -60374341 - B1F2 SINE Alu 0 149 3 2 1288 4352 261 72 12 chr5 92162956 92164173 -60373086 - Lx8 LINE L1 -10 7463 6175 2 1288 812 240 28 6 chr5 92164440 92164616 -60372643 + B3A SINE B2 2 181 -17 2 1288 26 50 0 0 chr5 92164626 92164666 -60372593 + AT_rich Low_complexity Low_complexity 1 40 0 2 1288 295 277 99 28 chr5 92165669 92165881 -60371378 - L1MC4 LINE L1 -6 8036 7810 2 1288 261 0 0 0 chr5 92166534 92166563 -60370696 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 1288 264 59 0 0 chr5 92167140 92167174 -60370085 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2 1288 1160 70 0 0 chr5 92167174 92167331 -60369928 - B2_Mm2 SINE B2 -32 163 7 2 1288 2505 189 44 0 chr5 92167722 92168198 -60369061 + RLTR18B LTR ERVK 8 504 -8 2 1288 26 0 0 0 chr5 92169474 92169500 -60367759 + AT_rich Low_complexity Low_complexity 1 26 0 2 1288 1106 83 0 7 chr5 92170369 92170515 -60366744 + B1_Mm SINE Alu 2 146 -1 2 1288 861 180 0 0 chr5 92170517 92170689 -60366570 + GA-rich Low_complexity Low_complexity 3 174 0 2 1288 297 0 0 0 chr5 92170689 92170722 -60366537 + (CAGG)n Simple_repeat Simple_repeat 1 33 0 2 1288 221 343 0 73 chr5 92170779 92170889 -60366370 - B3A SINE B2 -47 151 50 2 1288 794 244 66 41 chr5 92171781 92172143 -60365116 + RMER15 LTR ERVL 45 539 -36 2 1288 805 39 0 0 chr5 92172432 92172692 -60364567 + L1_Mus1 LINE L1 6455 6567 0 2 1288 213 192 0 55 chr5 92172791 92172846 -60364413 + (GGGTG)n Simple_repeat Simple_repeat 1 52 0 2 1288 23 0 0 0 chr5 92173137 92173160 -60364099 + AT_rich Low_complexity Low_complexity 1 23 0 2 1288 5010 111 1 9 chr5 92173219 92173918 -60363341 + Lx2A1 LINE L1 6256 6949 -59 2 1288 307 161 16 16 chr5 92173918 92173981 -60363278 - ORR1B1 LTR MaLR -331 63 1 2 1288 812 308 72 14 chr5 92174273 92174632 -60362627 + MLT1B LTR MaLR 11 390 0 2 1288 768 261 82 41 chr5 92175987 92176255 -60361004 + B4 SINE B4 14 292 0 2 1288 190 137 38 38 chr5 92176260 92176313 -60360946 + (CATA)n Simple_repeat Simple_repeat 2 54 0 2 1288 275 292 71 0 chr5 92176584 92176697 -60360562 + HAL1 LINE L1 793 913 -1594 2 1288 341 271 84 21 chr5 92176810 92176953 -60360306 - L1MCb LINE L1 -5531 1220 1069 2 1288 701 204 90 24 chr5 92177063 92177274 -60359985 - L1MCb LINE L1 -5065 980 756 2 1288 338 300 155 30 chr5 92177271 92177381 -60359878 - L1MCa LINE L1 -5761 747 624 2 1288 495 118 0 0 chr5 92177381 92177457 -60359802 + (CA)n Simple_repeat Simple_repeat 2 77 0 2 1288 338 300 155 30 chr5 92177457 92177617 -60359642 - L1MCa LINE L1 -5885 623 443 2 1288 927 67 45 0 chr5 92180651 92180785 -60356474 + B1_Mus1 SINE Alu 7 146 -2 2 1288 324 0 0 0 chr5 92180793 92180829 -60356430 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1288 572 138 33 41 chr5 92181078 92181199 -60356060 - B1_Mus1 SINE Alu 0 148 29 2 1288 723 177 8 39 chr5 92181442 92181571 -60355688 + B1_Mur1 SINE Alu 4 128 -21 2 1288 1090 107 5 5 chr5 92181576 92181783 -60355476 + (GAAA)n Simple_repeat Simple_repeat 1 207 0 2 1288 2286 88 20 3 chr5 92181993 92182334 -60354925 + IAPEY_LTR LTR ERVK 1 347 -38 2 1288 395 271 53 79 chr5 92182708 92182860 -60354399 + RSINE1 SINE B4 12 159 -6 2 1288 231 162 9 9 chr5 92182943 92183059 -60354200 + T-rich Low_complexity Low_complexity 1 116 0 2 1288 2516 251 141 72 chr5 92183453 92184515 -60352744 - Lx8 LINE L1 -147 7326 6191 2 1288 989 199 64 10 chr5 92184554 92184757 -60352502 + B3 SINE B2 3 216 0 2 1288 230 304 25 25 chr5 92186106 92186187 -60351072 - ID4 SINE ID -2 81 1 2 1288 402 284 29 43 chr5 92186839 92186979 -60350280 + B1F1 SINE Alu 12 149 0 2 1288 1499 91 39 9 chr5 92187119 92187352 -60349907 + L1_Mus3 LINE L1 6399 6638 0 2 1288 632 172 6 33 chr5 92187378 92187558 -60349701 + GA-rich Low_complexity Low_complexity 2 176 0 2 1288 1333 327 98 28 chr5 92187674 92188269 -60348990 + MTE-int LTR MaLR 890 1527 -53 2 1288 389 314 35 61 chr5 92188269 92188466 -60348793 + ORR1E LTR MaLR 1 192 -167 2 1288 324 0 0 0 chr5 92188716 92188752 -60348507 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1288 374 293 63 0 chr5 92188792 92188987 -60348272 - L1MEc LINE L1 -4854 1561 1344 2 1288 576 337 121 19 chr5 92190717 92191388 -60345871 - L1MEc LINE L1 -5405 995 257 2 1288 591 314 93 49 chr5 92191397 92191806 -60345453 + LTR68 LTR ERV1 11 437 -303 2 1288 385 301 74 14 chr5 92191971 92192187 -60345072 - L1MEc LINE L1 -6143 257 29 2 1288 2888 139 14 17 chr5 92192636 92192998 -60344261 + Lx4A LINE L1 6577 6938 -120 2 1288 396 0 0 0 chr5 92192998 92193042 -60344217 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1288 2888 139 14 17 chr5 92193042 92193162 -60344097 + Lx4A LINE L1 6939 7058 0 2 1288 198 71 0 0 chr5 92193350 92193378 -60343881 + (AATTG)n Simple_repeat Simple_repeat 2 29 0 2 1288 194 211 17 50 chr5 92193710 92193770 -60343489 + L3 LINE CR1 701 758 -3731 2 1288 251 254 17 0 chr5 92195224 92195283 -60341976 + MIRc SINE MIR 102 161 -107 2 1288 344 152 0 15 chr5 92195694 92195761 -60341498 + GA-rich Low_complexity Low_complexity 2 67 0 2 1288 429 97 0 0 chr5 92195776 92195848 -60341411 + (CAGA)n Simple_repeat Simple_repeat 1 72 0 2 1288 417 300 51 66 chr5 92196562 92196897 -60340362 - LTR85a LTR Gypsy? -370 332 3 2 1288 307 318 0 80 chr5 92197683 92197820 -60339439 - MIRb SINE MIR -105 163 38 2 1288 336 270 11 22 chr5 92197830 92197921 -60339338 + ID_B1 SINE B4 1 90 -134 2 1288 342 0 0 0 chr5 92198623 92198661 -60338598 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 1288 315 240 200 8 chr5 92198874 92199004 -60338255 - HAL1-3A_ME LINE L1 -420 2438 2284 2 1288 230 0 33 0 chr5 92199028 92199058 -60338201 + (TC)n Simple_repeat Simple_repeat 2 32 0 2 1288 678 85 0 0 chr5 92199091 92199185 -60338074 + (TC)n Simple_repeat Simple_repeat 2 95 0 2 1288 1547 143 99 36 chr5 92201318 92201651 -60335608 - ORR1B2 LTR MaLR -13 354 1 2 1288 241 383 8 17 chr5 92202678 92202795 -60334464 - MIRm SINE MIR 0 276 161 2 1288 591 254 64 17 chr5 92202891 92203063 -60334196 + B3A SINE B2 1 180 -18 2 1288 206 156 0 22 chr5 92203101 92203147 -60334112 + GA-rich Low_complexity Low_complexity 3 47 0 2 1288 602 139 61 0 chr5 92203452 92203617 -60333642 + CT-rich Low_complexity Low_complexity 2 176 0 2 1288 495 48 0 0 chr5 92203797 92203859 -60333400 + (GGGGA)n Simple_repeat Simple_repeat 4 65 0 2 1288 1151 141 23 0 chr5 92203944 92204121 -60333138 + B2_Mm2 SINE B2 1 181 -14 2 1288 351 109 0 0 chr5 92204153 92204208 -60333051 + B2_Mm2 SINE B2 47 101 -94 2 1288 23 54 0 0 chr5 92204213 92204250 -60333009 + AT_rich Low_complexity Low_complexity 1 37 0 2 1288 671 333 99 24 chr5 92204536 92205151 -60332108 - L1ME2 LINE L1 -208 5956 5296 2 1288 396 0 0 0 chr5 92205550 92205594 -60331665 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1288 368 191 12 0 chr5 92205597 92205681 -60331578 + (TA)n Simple_repeat Simple_repeat 1 85 0 3 1288 208 291 36 0 chr5 92206056 92206111 -60331148 + MER5B DNA MER1_type 2 58 -120 3 1288 180 219 0 0 chr5 92206501 92206542 -60330717 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1288 38 61 0 0 chr5 92206551 92206617 -60330642 + AT_rich Low_complexity Low_complexity 1 66 0 3 1288 393 296 64 0 chr5 92206723 92206848 -60330411 - RSINE1 SINE B4 -18 147 15 3 1288 5290 169 10 14 chr5 92207005 92207918 -60329341 - Lx5 LINE L1 0 7050 6142 3 1288 3160 151 7 13 chr5 92207923 92208466 -60328793 + L1_Mur2 LINE L1 4703 5242 -635 3 1288 820 63 0 0 chr5 92208486 92208597 -60328662 + B1_Mus2 SINE Alu 36 146 -1 3 1288 747 144 0 0 chr5 92208597 92208722 -60328537 + (GGA)n Simple_repeat Simple_repeat 2 126 0 3 1288 1165 114 32 67 chr5 92208754 92208870 -60328389 + L1_Mur2 LINE L1 5237 5362 -518 3 1288 2038 0 0 0 chr5 92208870 92209094 -60328165 + L1Md_A LINE L1 6359 6582 0 3 1288 1165 102 30 68 chr5 92209094 92209208 -60328051 + L1_Mur2 LINE L1 5362 5463 -417 3 1288 204 125 0 0 chr5 92209696 92209728 -60327531 + (TGGG)n Simple_repeat Simple_repeat 3 34 0 3 1288 268 307 20 0 chr5 92209949 92210050 -60327209 + LTR33 LTR ERVL 3 105 -410 3 1288 192 77 0 0 chr5 92210359 92210385 -60326874 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 3 1288 830 243 15 19 chr5 92210975 92211181 -60326078 + B3 SINE B2 7 211 -5 3 1288 578 231 44 26 chr5 92211306 92211533 -60325726 - L1MA7 LINE L1 0 6291 6061 3 1288 252 100 0 0 chr5 92211635 92211675 -60325584 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 1288 306 73 0 0 chr5 92211675 92211716 -60325543 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1288 600 316 96 9 chr5 92211894 92212194 -60325065 - L1MC LINE L1 -2203 5679 5357 3 1288 402 237 52 94 chr5 92212392 92212647 -60324612 - RLTR5_Mm LTR ERV1 -121 507 238 3 1288 367 274 39 0 chr5 92212780 92212882 -60324377 - ID_B1 SINE B4 -78 146 41 3 1288 1337 219 72 35 chr5 92213608 92213678 -60323581 - RCHARR1 DNA MER1_type -3 971 908 3 1288 2282 158 128 21 chr5 92213678 92214155 -60323104 - RLTR12B LTR ERVK 0 528 1 3 1288 1337 219 72 35 chr5 92214155 92214515 -60322744 - RCHARR1 DNA MER1_type -67 907 525 3 1288 675 278 31 20 chr5 92214528 92214723 -60322536 + B3A SINE B2 2 198 0 3 1288 1086 271 80 3 chr5 92214738 92215049 -60322210 - Lx8 LINE L1 -2 7471 7137 3 1288 1673 255 69 14 chr5 92216488 92216993 -60320266 - RCHARR1 DNA MER1_type -441 533 1 3 1288 237 246 0 34 chr5 92217962 92218021 -60319238 + GA-rich Low_complexity Low_complexity 2 58 0 3 1288 618 131 0 0 chr5 92218334 92218433 -60318826 + (GGAA)n Simple_repeat Simple_repeat 3 101 0 3 1288 894 144 0 16 chr5 92219230 92219413 -60317846 + CT-rich Low_complexity Low_complexity 1 180 0 3 1288 1247 34 7 0 chr5 92220261 92220407 -60316852 + B1_Mus1 SINE Alu 2 148 0 3 1288 322 304 87 48 chr5 92220582 92220893 -60316366 - L1MC4 LINE L1 -590 7452 7130 3 1288 474 18 0 0 chr5 92223079 92223134 -60314125 + (TC)n Simple_repeat Simple_repeat 1 55 0 3 1288 360 0 0 0 chr5 92223134 92223173 -60314086 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1288 257 242 0 0 chr5 92224585 92224647 -60312612 + MLT1A1 LTR MaLR 333 394 -14 3 1288 219 139 0 0 chr5 92224727 92224763 -60312496 + (TTG)n Simple_repeat Simple_repeat 1 36 0 3 1288 607 177 99 8 chr5 92224763 92224894 -60312365 - B1_Mur2 SINE Alu -2 147 5 3 1288 515 320 68 129 chr5 92225690 92225785 -60311474 + B4A SINE B4 3 96 -196 3 1288 670 247 25 19 chr5 92225785 92225942 -60311317 + RSINE1 SINE B4 3 160 -5 3 1288 515 320 68 129 chr5 92225942 92226155 -60311104 + B4A SINE B4 97 292 0 3 1288 319 343 66 79 chr5 92226196 92226500 -60310759 - MLT1L LTR MaLR -60 550 251 3 1288 429 243 87 14 chr5 92226895 92227033 -60310226 - B1F2 SINE Alu 0 149 2 3 1288 563 261 122 31 chr5 92227090 92227319 -60309940 + B4A SINE B4 1 250 -42 3 1288 207 175 0 0 chr5 92227343 92227383 -60309876 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1288 233 296 0 14 chr5 92228261 92228333 -60308926 + MIRb SINE MIR 123 193 -75 3 1288 560 40 13 0 chr5 92229208 92229283 -60307976 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1288 3313 48 8 0 chr5 92229401 92229798 -60307461 + MTB LTR MaLR 1 400 0 3 1288 204 97 0 0 chr5 92230500 92230531 -60306728 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1288 378 0 0 0 chr5 92230578 92230620 -60306639 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1288 492 62 0 0 chr5 92231224 92231288 -60305971 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1288 1444 213 209 7 chr5 92231680 92232125 -60305134 - RMER15 LTR ERVL -14 561 27 3 1288 811 271 179 48 chr5 92232638 92233246 -60304013 + L1MA5 LINE L1 5596 6283 -17 3 1288 1531 173 85 35 chr5 92234303 92234644 -60302615 + RLTR15 LTR ERVK 2 359 0 3 1288 1065 118 0 0 chr5 92234974 92235152 -60302107 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 3 1288 519 256 0 8 chr5 92236195 92236313 -60300946 + PB1D10 SINE Alu 1 117 0 3 1288 263 365 24 0 chr5 92236431 92236557 -60300702 + MLT1K LTR MaLR 460 588 -7 3 1288 7557 26 0 8 chr5 92237876 92238757 -60298502 + L1Md_F3 LINE L1 5710 6583 -1 3 1288 916 162 73 5 chr5 92239013 92239205 -60298054 + Lx LINE L1 6450 6654 0 3 1288 1422 84 21 0 chr5 92241045 92241236 -60296023 - B2_Mm2 SINE B2 0 195 1 3 1288 224 280 0 0 chr5 92241324 92241374 -60295885 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1288 540 308 71 61 chr5 92241399 92241679 -60295580 - B4 SINE B4 -9 283 1 3 1288 243 328 37 34 chr5 92242647 92242944 -60294315 - L1MD LINE L1 -1596 4550 4253 3 1288 1413 128 51 27 chr5 92244154 92244411 -60292848 + Lx3B LINE L1 6708 6970 -3 3 1288 225 65 0 0 chr5 92244441 92244472 -60292787 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3 1288 198 0 0 0 chr5 92246291 92246313 -60290946 + (G)n Simple_repeat Simple_repeat 1 22 0 3 1288 270 0 0 0 chr5 92246697 92246727 -60290532 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1288 784 301 89 33 chr5 92247022 92247414 -60289845 + MER70B LTR ERVL 12 425 -153 3 1288 429 70 0 0 chr5 92248266 92248323 -60288936 + (TATG)n Simple_repeat Simple_repeat 4 60 0 3 1288 553 279 18 18 chr5 92248428 92248592 -60288667 - RSINE1 SINE B4 0 165 2 3 1288 27 0 0 0 chr5 92248597 92248624 -60288635 + AT_rich Low_complexity Low_complexity 1 27 0 3 1288 631 152 9 0 chr5 92248647 92248752 -60288507 + ID_B1 SINE B4 119 224 0 3 1288 608 248 25 37 chr5 92248752 92248915 -60288344 + RSINE1 SINE B4 3 163 -2 3 1288 202 119 23 45 chr5 92248915 92248959 -60288300 + (CTAAA)n Simple_repeat Simple_repeat 3 45 0 3 1288 21 0 0 0 chr5 92248960 92248981 -60288278 + AT_rich Low_complexity Low_complexity 1 21 0 3 1288 7355 114 31 24 chr5 92249337 92250628 -60286631 + Lx5 LINE L1 4668 5995 -1055 3 1288 222 202 165 0 chr5 92250628 92250707 -60286552 - RSINE1 SINE B4 -65 100 9 3 1288 307 309 20 10 chr5 92250751 92250849 -60286410 - PB1D10 SINE Alu -18 99 1 3 1288 405 0 0 0 chr5 92251754 92251799 -60285460 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1288 195 268 127 0 chr5 92252916 92252987 -60284272 + L2 LINE L2 2437 2516 -903 3 1288 2111 126 11 6 chr5 92252993 92253345 -60283914 + ORR1B1 LTR MaLR 41 394 0 3 1288 268 261 83 48 chr5 92254371 92254516 -60282743 + MIRb SINE MIR 21 166 -96 3 1288 243 277 71 12 chr5 92254540 92254624 -60282635 - MER34A LTR ERV1 -22 549 461 3 1288 279 79 0 0 chr5 92255950 92255988 -60281271 + (TCCC)n Simple_repeat Simple_repeat 2 39 0 3 1288 224 122 24 0 chr5 92256460 92256501 -60280758 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1288 370 256 89 69 chr5 92256509 92256812 -60280447 - L1MEc LINE L1 -1716 4597 4298 3 1288 366 268 100 18 chr5 92256934 92257215 -60280044 - L1MEc LINE L1 -4815 1585 1282 3 1288 462 213 0 0 chr5 92257226 92257381 -60279878 + (CA)n Simple_repeat Simple_repeat 1 155 0 3 1288 304 335 68 26 chr5 92257596 92257786 -60279473 - B4A SINE B4 -22 270 73 3 1288 379 262 85 27 chr5 92257876 92258064 -60279195 - L1MEc LINE L1 -5254 1146 948 3 1288 3149 70 8 0 chr5 92258453 92258850 -60278409 + MTB LTR MaLR 1 400 0 3 1288 857 283 50 36 chr5 92258875 92259210 -60278049 - Lx8 LINE L1 -1553 5920 5549 3 1288 641 351 73 34 chr5 92259226 92259704 -60277555 + L1ME2 LINE L1 5603 6099 -65 3 1288 387 0 0 0 chr5 92260126 92260169 -60277090 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 1288 2304 144 35 5 chr5 92260556 92260955 -60276304 - MTC LTR MaLR 0 421 11 3 1288 546 153 68 8 chr5 92260993 92261125 -60276134 - MTC-int LTR MaLR 0 1258 1119 3 1288 36278 42 1 3 chr5 92261125 92266378 -60270881 + L1Md_T LINE L1 249 5589 -297 3 1288 8721 27 0 0 chr5 92266378 92267374 -60269885 + L1Md_T LINE L1 5590 6585 0 3 1288 4909 147 114 29 chr5 92267374 92268418 -60268841 - MTC-int LTR MaLR -124 1134 2 3 1288 2188 158 40 10 chr5 92268417 92268820 -60268439 - MTC LTR MaLR 0 421 7 3 1288 1421 207 20 60 chr5 92270127 92270476 -60266783 + MTD LTR MaLR 1 335 -84 3 1288 1328 238 32 93 chr5 92270649 92271080 -60266179 - MTD LTR MaLR -14 405 1 3 1288 278 118 39 0 chr5 92272756 92272807 -60264452 + G-rich Low_complexity Low_complexity 1 53 0 3 1288 213 121 0 0 chr5 92272911 92272944 -60264315 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1288 3938 99 79 15 chr5 92273903 92274500 -60262759 + Lx LINE L1 6020 6654 0 3 1288 245 288 108 0 chr5 92274516 92274636 -60262623 + L2c LINE L2 3065 3198 -189 3 1289 239 140 0 66 chr5 92276505 92276566 -60260693 + C-rich Low_complexity Low_complexity 3 59 0 3 1289 243 103 0 0 chr5 92277685 92277724 -60259535 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1289 315 0 0 0 chr5 92277724 92277758 -60259501 + (GA)n Simple_repeat Simple_repeat 1 35 0 3 1289 443 251 25 84 chr5 92278132 92278327 -60258932 - MTC LTR MaLR -229 190 1 3 1289 543 242 142 6 chr5 92278330 92278492 -60258767 + MTD LTR MaLR 223 406 -13 4 1289 1281 178 5 9 chr5 92279079 92279300 -60257959 + URR1A DNA MER1_type 5 224 -2 4 1289 3461 33 2 0 chr5 92279866 92280261 -60256998 - MTA_Mm LTR MaLR 0 396 1 4 1289 1959 207 58 24 chr5 92281361 92281862 -60255397 - RMER5 LTR ERV1 -16 518 1 4 1289 2777 34 0 0 chr5 92283077 92283403 -60253856 + L1Md_A LINE L1 6257 6582 0 4 1289 286 219 62 0 chr5 92283421 92283433 -60253826 + B4 SINE B4 70 137 -155 4 1289 345 96 0 0 chr5 92283433 92283485 -60253774 + B1_Mus2 SINE Alu 1 52 -95 4 1289 693 289 59 18 chr5 92283610 92283832 -60253427 + B4 SINE B4 60 290 -2 4 1289 446 264 78 0 chr5 92284021 92284150 -60253109 - B1F2 SINE Alu -6 143 5 4 1289 26 0 0 0 chr5 92284936 92284962 -60252297 + AT_rich Low_complexity Low_complexity 1 26 0 4 1289 240 198 10 40 chr5 92285440 92285540 -60251719 + Lx9 LINE L1 7541 7637 -7 4 1289 234 91 0 0 chr5 92286077 92286110 -60251149 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1289 941 163 0 6 chr5 92286621 92286800 -60250459 + CT-rich Low_complexity Low_complexity 3 180 0 4 1289 2523 280 112 5 chr5 92286841 92287634 -60249625 - Lx8 LINE L1 -368 7105 6228 4 1289 932 294 102 28 chr5 92287648 92288130 -60249129 + Lx8 LINE L1 5432 5974 -1670 4 1289 201 147 0 0 chr5 92288136 92288170 -60249089 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 4 1289 1374 67 78 0 chr5 92288240 92288400 -60248859 + B2_Mm1t SINE B2 1 160 -33 4 1289 315 0 0 0 chr5 92288400 92288435 -60248824 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 4 1289 1374 67 78 0 chr5 92288435 92288453 -60248806 + B2_Mm1t SINE B2 161 191 -2 4 1289 2020 165 40 15 chr5 92288492 92289007 -60248252 + RMER4B LTR ERVK 17 585 0 4 1289 613 250 129 17 chr5 92289763 92290003 -60247256 - MLT1C LTR MaLR -18 449 183 4 1289 270 292 0 0 chr5 92290600 92290665 -60246594 + L1M3f LINE L1 639 703 -4625 4 1289 1024 181 87 10 chr5 92291939 92292134 -60245125 + B3 SINE B2 2 211 -5 4 1289 1737 217 7 63 chr5 92292157 92292585 -60244674 + MTD LTR MaLR 1 404 -15 4 1289 224 318 140 0 chr5 92292793 92292900 -60244359 - MIR SINE MIR -111 151 30 4 1289 1541 219 35 29 chr5 92294167 92294544 -60242715 - MTD LTR MaLR -40 379 1 4 1289 835 217 22 17 chr5 92295632 92295810 -60241449 + ORR1D1 LTR MaLR 3 181 -193 4 1289 797 117 35 0 chr5 92295814 92295985 -60241274 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 4 1289 312 174 0 14 chr5 92295986 92296056 -60241203 + ORR1D1 LTR MaLR 175 243 -131 4 1289 322 283 26 17 chr5 92296043 92296158 -60241101 + LTR16D LTR ERVL 534 649 -2 4 1289 381 244 0 0 chr5 92296272 92296354 -60240905 + MTC LTR MaLR 1 82 -339 4 1289 1202 186 143 26 chr5 92296358 92296623 -60240636 + Lx6 LINE L1 7165 7460 0 4 1289 1587 156 99 6 chr5 92296632 92296954 -60240305 + MTC LTR MaLR 70 421 0 4 1289 435 318 67 15 chr5 92296957 92297152 -60240107 + MER2 DNA MER2_type 141 345 0 4 1289 600 14 0 0 chr5 92297561 92297630 -60239629 + (GTTTG)n Simple_repeat Simple_repeat 2 70 0 4 1289 200 167 0 0 chr5 92297644 92297674 -60239585 + (CTG)n Simple_repeat Simple_repeat 3 32 0 4 1289 782 196 21 0 chr5 92297674 92297817 -60239442 - B1_Mur3 SINE Alu -3 146 1 4 1289 195 162 0 0 chr5 92299014 92299051 -60238208 + (CAT)n Simple_repeat Simple_repeat 3 39 0 4 1289 798 219 30 45 chr5 92299473 92299674 -60237585 - B3A SINE B2 0 198 1 4 1289 793 0 0 20 chr5 92299763 92299862 -60237397 + (GAA)n Simple_repeat Simple_repeat 2 98 0 4 1289 189 0 0 0 chr5 92299875 92299896 -60237363 + (GGGA)n Simple_repeat Simple_repeat 4 24 0 4 1289 997 224 149 45 chr5 92299961 92300317 -60236942 + MTD LTR MaLR 18 410 -9 4 1289 285 339 105 65 chr5 92300454 92300760 -60236499 - MLT2B3 LTR ERVL -213 341 24 4 1289 3311 151 17 14 chr5 92300910 92301494 -60235765 + RLTR17 LTR ERVK 101 686 -6 4 1289 530 343 36 45 chr5 92301794 92302155 -60235104 + MLT1A0 LTR MaLR 1 374 0 4 1289 276 224 0 0 chr5 92302566 92302633 -60234626 + (TTGG)n Simple_repeat Simple_repeat 2 68 0 4 1289 244 214 143 0 chr5 92303270 92303340 -60233919 + RSINE1 SINE B4 82 161 -4 4 1289 354 61 0 0 chr5 92303340 92303389 -60233870 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1289 271 253 4 31 chr5 92303757 92304027 -60233232 + GA-rich Low_complexity Low_complexity 1 262 0 4 1289 206 260 0 0 chr5 92305569 92305619 -60231640 + (CATA)n Simple_repeat Simple_repeat 4 53 0 4 1289 188 253 11 0 chr5 92305640 92305731 -60231528 + (CA)n Simple_repeat Simple_repeat 1 92 0 4 1289 1083 141 47 42 chr5 92305735 92305928 -60231331 + B2_Mm2 SINE B2 2 195 0 4 1289 230 219 0 27 chr5 92305943 92306018 -60231241 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 4 1289 262 337 12 0 chr5 92307025 92307108 -60230151 - MLT1A LTR MaLR -243 131 48 4 1289 271 352 37 0 chr5 92307481 92307589 -60229670 + L2c LINE L2 3274 3385 -2 4 1289 259 216 75 64 chr5 92307687 92307781 -60229478 - ORR1E LTR MaLR -5 354 260 4 1289 510 135 9 19 chr5 92308041 92308147 -60229112 + (TG)n Simple_repeat Simple_repeat 1 105 0 4 1289 465 275 136 12 chr5 92308147 92308309 -60228950 - B3A SINE B2 -16 182 1 4 1289 257 109 0 21 chr5 92308323 92308370 -60228889 + (TTAG)n Simple_repeat Simple_repeat 3 48 0 4 1289 1251 186 5 5 chr5 92308559 92308775 -60228484 + B3 SINE B2 1 216 0 4 1289 1285 76 53 21 chr5 92308782 92308971 -60228288 + B2_Mm2 SINE B2 1 195 0 4 1289 354 205 0 0 chr5 92309182 92309260 -60227999 + (CTG)n Simple_repeat Simple_repeat 2 79 0 4 1289 1764 123 15 28 chr5 92309346 92309671 -60227588 + ORR1A4 LTR MaLR 1 321 -8 4 1289 612 254 40 0 chr5 92309688 92309814 -60227445 - B3 SINE B2 -85 131 1 4 1289 210 118 0 0 chr5 92310488 92310522 -60226737 + (TA)n Simple_repeat Simple_repeat 2 35 0 4 1289 1662 147 6 126 chr5 92311528 92311893 -60225366 - ORR1A3 LTR MaLR -5 321 1 4 1289 5732 105 42 90 chr5 92311893 92312980 -60224279 - ORR1A3-int LTR MaLR 0 1963 929 4 1289 3315 46 10 0 chr5 92313111 92313504 -60223755 + MTB LTR MaLR 4 400 0 4 1289 8254 142 24 6 chr5 92313541 92314386 -60222873 + Lx5 LINE L1 4503 5376 -501 4 1289 3533 23 2 0 chr5 92314386 92314781 -60222478 - MTA_Mm LTR MaLR 0 396 1 4 1289 8254 153 56 8 chr5 92314781 92316371 -60220888 + Lx5 LINE L1 5377 7050 0 4 1289 7874 145 59 15 chr5 92316368 92317731 -60219528 + Lx7 LINE L1 3232 4624 -1256 4 1289 363 60 0 0 chr5 92317731 92317781 -60219478 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1289 7874 145 59 15 chr5 92317781 92317887 -60219372 + Lx7 LINE L1 4625 4765 -1115 4 1289 888 191 71 40 chr5 92317889 92318113 -60219146 + RMER13B LTR ERVK 535 765 -143 4 1289 7284 200 71 21 chr5 92318187 92318707 -60218552 + Lx7 LINE L1 5713 6246 -1450 4 1289 2444 65 12 58 chr5 92318707 92319050 -60218209 + ORR1A2 LTR MaLR 1 327 0 4 1289 7284 193 70 28 chr5 92319050 92320379 -60216880 + Lx7 LINE L1 6247 7692 -4 4 1289 234 0 0 0 chr5 92320400 92320426 -60216833 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 4 1289 195 42 0 0 chr5 92320863 92320887 -60216372 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1289 1200 54 0 13 chr5 92320992 92321142 -60216117 + B1_Mus1 SINE Alu 1 148 0 4 1289 243 0 0 0 chr5 92321148 92321175 -60216084 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 1289 412 175 373 7 chr5 92321176 92321318 -60215941 + Lx7 LINE L1 7264 7457 -239 4 1289 405 0 0 0 chr5 92321330 92321375 -60215884 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1289 183 80 0 0 chr5 92321375 92321399 -60215860 + (TA)n Simple_repeat Simple_repeat 2 26 0 4 1289 324 70 0 0 chr5 92322223 92322266 -60214993 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 4 1289 207 304 29 0 chr5 92323011 92323080 -60214179 - MIRb SINE MIR -28 240 170 4 1289 1802 85 0 12 chr5 92323874 92324123 -60213136 - L1_Mus1 LINE L1 0 6567 6322 4 1289 310 250 53 21 chr5 92324470 92324564 -60212695 + L1M4 LINE L1 5192 5288 -858 4 1289 230 152 43 128 chr5 92324745 92324933 -60212326 + (TAATG)n Simple_repeat Simple_repeat 1 172 0 4 1289 1819 181 15 54 chr5 92325524 92325916 -60211343 - ORR1C1 LTR MaLR -1 377 1 4 1289 336 217 76 34 chr5 92325916 92326030 -60211229 + LTR81C LTR ERV1? 874 992 -161 4 1289 344 188 27 40 chr5 92326339 92326489 -60210770 + (TATG)n Simple_repeat Simple_repeat 4 151 0 4 1289 331 217 18 68 chr5 92326517 92326680 -60210579 + (TATATG)n Simple_repeat Simple_repeat 4 158 0 4 1289 309 349 83 8 chr5 92327050 92327316 -60209943 + LTR16C LTR ERVL 148 433 -56 4 1289 767 308 55 22 chr5 92328735 92329007 -60208252 - MLT1A0 LTR MaLR -79 286 6 4 1289 472 324 54 25 chr5 92329152 92329393 -60207866 + MLT1I LTR MaLR 129 376 -35 4 1289 222 316 0 31 chr5 92329393 92329491 -60207768 - B1F SINE Alu -29 120 26 4 1289 540 229 46 0 chr5 92329437 92329546 -60207713 - ID_B1 SINE B4 -108 116 3 4 1289 45 19 0 0 chr5 92329832 92329884 -60207375 + AT_rich Low_complexity Low_complexity 1 52 0 4 1289 180 0 0 0 chr5 92329921 92329941 -60207318 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 4 1289 289 267 185 0 chr5 92330178 92330313 -60206946 + MER2 DNA MER2_type 1 160 -185 4 1289 3506 162 53 15 chr5 92330318 92330976 -60206283 + RLTR17 LTR ERVK 10 692 0 4 1289 355 303 92 0 chr5 92330976 92331090 -60206169 + MER2 DNA MER2_type 137 264 -81 4 1289 982 151 98 47 chr5 92331172 92331387 -60205872 + URR1A DNA MER1_type 1 226 0 4 1289 338 285 69 130 chr5 92331441 92331687 -60205572 + MLT1I LTR MaLR 416 646 -8 4 1289 273 259 0 90 chr5 92332804 92332893 -60204366 - MLT1J LTR MaLR -9 503 423 4 1289 373 377 50 17 chr5 92333265 92333505 -60203754 + MLT1J LTR MaLR 3 250 -262 4 1289 1924 152 3 47 chr5 92333855 92334199 -60203060 - ORR1A4 LTR MaLR 0 329 1 4 1289 343 246 96 0 chr5 92334235 92334335 -60202924 - B3 SINE B2 -60 138 10 4 1289 854 216 41 0 chr5 92334535 92334729 -60202530 - MLT2B2 LTR ERVL -307 208 7 5 1289 249 322 66 8 chr5 92334759 92334881 -60202378 + MLT1L LTR MaLR 6 134 -476 5 1289 1122 140 38 0 chr5 92334932 92335118 -60202141 - RLTR20B3 LTR ERVK -384 193 1 5 1289 24 0 0 0 chr5 92335502 92335526 -60201733 + AT_rich Low_complexity Low_complexity 1 24 0 5 1289 270 0 0 0 chr5 92335626 92335656 -60201603 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 5 1289 255 317 0 82 chr5 92335656 92335766 -60201493 - PB1D10 SINE Alu -14 103 3 5 1289 264 170 0 0 chr5 92336275 92336322 -60200937 + MIRc SINE MIR 197 243 -25 5 1289 482 243 19 0 chr5 92336896 92337003 -60200256 + PB1D9 SINE Alu 2 110 -10 5 1289 258 106 0 0 chr5 92337004 92337051 -60200208 + (CAAT)n Simple_repeat Simple_repeat 2 48 0 5 1289 919 157 0 17 chr5 92337057 92337238 -60200021 + GA-rich Low_complexity Low_complexity 3 180 0 5 1289 360 0 0 0 chr5 92337239 92337279 -60199980 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 5 1289 259 330 105 48 chr5 92337463 92337673 -60199586 + LTR16E1 LTR ERVL 307 528 -10 5 1289 362 269 155 20 chr5 92337733 92337881 -60199378 - MLT1B LTR MaLR -19 371 204 5 1289 183 264 0 0 chr5 92338157 92338210 -60199049 - MIR SINE MIR -135 73 21 5 1289 247 219 98 0 chr5 92338793 92338875 -60198384 + Lx8 LINE L1 7379 7468 -5 5 1289 22 0 0 0 chr5 92338875 92338897 -60198362 + AT_rich Low_complexity Low_complexity 1 22 0 5 1289 690 28 179 0 chr5 92338900 92339006 -60198253 - B1_Mus2 SINE Alu 0 147 23 5 1289 184 325 0 0 chr5 92340120 92340197 -60197062 + MIRb SINE MIR 175 251 -17 5 1289 409 330 46 6 chr5 92340339 92340513 -60196746 + MIR SINE MIR 36 216 -46 5 1289 1489 82 0 0 chr5 92341976 92342171 -60195088 + B2_Mm2 SINE B2 1 195 0 5 1289 303 305 50 8 chr5 92342567 92342686 -60194573 - LTR16A1 LTR ERVL 0 456 333 5 1289 1110 201 265 13 chr5 92343298 92343401 -60193858 - ORR1D1 LTR MaLR -1 373 244 5 1289 201 121 0 0 chr5 92343401 92343434 -60193825 + (CAGG)n Simple_repeat Simple_repeat 4 36 0 5 1289 1110 201 265 13 chr5 92343434 92343628 -60193631 - ORR1D1 LTR MaLR -131 243 1 5 1289 878 314 96 40 chr5 92343762 92344157 -60193102 + MTD LTR MaLR 3 419 0 5 1289 740 290 88 0 chr5 92344285 92344568 -60192691 + L1MDa LINE L1 82 389 -6244 5 1289 510 268 193 33 chr5 92344569 92344762 -60192497 + L1MDa LINE L1 3851 4169 -2368 5 1289 375 78 0 0 chr5 92344762 92344813 -60192446 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1289 699 260 68 71 chr5 92344813 92344948 -60192311 + L1MDa LINE L1 4170 4301 -2236 5 1289 1160 232 128 15 chr5 92344948 92345285 -60191974 - MTE2b LTR MaLR -4 375 1 5 1289 699 260 68 71 chr5 92345285 92345322 -60191937 + L1MDa LINE L1 4302 4336 -2201 5 1289 254 95 0 23 chr5 92345322 92345365 -60191894 + (TTA)n Simple_repeat Simple_repeat 2 43 0 5 1289 699 260 68 71 chr5 92345365 92345532 -60191727 + L1MDa LINE L1 4337 4509 -2028 5 1289 662 261 159 41 chr5 92345695 92345990 -60191269 + MLT1A LTR MaLR 13 351 -23 5 1289 639 265 171 32 chr5 92346033 92346442 -60190817 + L1MDa LINE L1 4878 5343 -1194 5 1289 228 203 14 28 chr5 92346548 92346619 -60190640 + L1MDa LINE L1 5383 5452 -1085 5 1289 363 271 159 0 chr5 92346659 92346766 -60190493 + B3 SINE B2 2 125 -70 5 1289 679 223 14 0 chr5 92346918 92347057 -60190202 + B1_Mur3 SINE Alu 3 143 -6 5 1289 423 0 0 0 chr5 92347058 92347105 -60190154 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 5 1289 288 236 38 0 chr5 92347449 92347522 -60189737 + PB1D10 SINE Alu 1 85 -64 5 1289 485 154 11 0 chr5 92347559 92347650 -60189609 + GA-rich Low_complexity Low_complexity 1 92 0 5 1289 400 322 75 30 chr5 92347701 92347967 -60189292 - MER21B LTR ERV1 -364 499 222 5 1289 1518 113 25 12 chr5 92347978 92348219 -60189040 + ORR1A4 LTR MaLR 86 329 0 5 1289 231 36 0 0 chr5 92349340 92349368 -60187891 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1289 341 248 13 40 chr5 92349404 92349555 -60187704 + (TA)n Simple_repeat Simple_repeat 1 147 0 5 1289 1130 110 0 0 chr5 92349756 92349920 -60187339 - B2_Mm2 SINE B2 -30 165 2 5 1289 38 0 0 0 chr5 92350019 92350057 -60187202 + AT_rich Low_complexity Low_complexity 1 38 0 5 1289 375 252 42 38 chr5 92350207 92350346 -60186913 - MLT1A0 LTR MaLR -1 407 216 5 1289 360 0 0 0 chr5 92350351 92350391 -60186868 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1289 9973 73 25 8 chr5 92350404 92351740 -60185519 - Lx3B LINE L1 -1 6972 5614 5 1289 241 323 31 25 chr5 92352323 92352485 -60184774 + L1M5 LINE L1 2879 3041 -3105 5 1289 242 254 0 48 chr5 92353225 92353287 -60183972 - PB1D10 SINE Alu -32 85 27 5 1289 497 308 45 23 chr5 92353468 92353644 -60183615 - B3A SINE B2 -18 180 1 5 1289 4393 14 2 24 chr5 92353848 92354352 -60182907 + MT2_Mm LTR ERVL 1 493 0 5 1289 28497 10 16 0 chr5 92354352 92357479 -60179780 + MERVL-int LTR ERVL 1 3177 -2308 5 1289 18353 23 1 0 chr5 92357475 92359519 -60177740 + MERVL-int LTR ERVL 3327 5371 -114 5 1289 374 123 13 40 chr5 92359519 92359595 -60177664 + ORR1A3-int LTR MaLR 567 640 -1323 5 1289 321 0 0 0 chr5 92359595 92359633 -60177626 + MERVL-int LTR ERVL 5448 5485 0 5 1289 4393 14 2 24 chr5 92359633 92360137 -60177122 + MT2_Mm LTR ERVL 1 493 0 5 1289 480 294 179 23 chr5 92360452 92360723 -60176536 - MLT1A0 LTR MaLR -32 333 21 5 1289 659 198 48 36 chr5 92360716 92360907 -60176352 + B3 SINE B2 9 192 -3 5 1289 1670 32 0 0 chr5 92360910 92361100 -60176159 + B2_Mm1t SINE B2 1 190 -3 5 1289 415 246 7 10 chr5 92362075 92362189 -60175070 - PB1D10 SINE Alu -8 142 24 5 1289 783 101 43 0 chr5 92362195 92362333 -60174926 + (TTCC)n Simple_repeat Simple_repeat 4 147 0 5 1289 395 43 0 0 chr5 92362333 92362380 -60174879 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 1289 3279 199 60 1 chr5 92362380 92363231 -60174028 - Lx5 LINE L1 -8 7042 6142 5 1289 2727 122 7 2 chr5 92363243 92363662 -60173597 - L1_Mur2 LINE L1 -857 5020 4600 5 1289 3812 149 100 94 chr5 92363662 92363767 -60173492 - RMER19B LTR ERVK 0 902 797 5 1289 1367 65 54 0 chr5 92363767 92363951 -60173308 + B2_Mm2 SINE B2 1 194 -1 5 1289 3812 149 100 94 chr5 92363951 92364741 -60172518 - RMER19B LTR ERVK -106 796 1 5 1289 897 205 81 0 chr5 92364764 92364949 -60172310 - B3 SINE B2 -1 215 16 5 1289 316 301 84 67 chr5 92366194 92366372 -60170887 + MTEa LTR MaLR 100 280 -99 5 1289 1208 54 0 0 chr5 92366541 92366688 -60170571 + B1_Mm SINE Alu 1 147 0 5 1289 194 270 14 0 chr5 92367226 92367300 -60169959 + GA-rich Low_complexity Low_complexity 2 76 0 5 1289 197 289 39 62 chr5 92368212 92368341 -60168918 + L2a LINE L2 3287 3412 -14 5 1289 645 80 0 0 chr5 92368568 92368656 -60168603 + (GGGA)n Simple_repeat Simple_repeat 2 89 0 5 1289 272 365 94 6 chr5 92369502 92369662 -60167597 - MIR SINE MIR -77 185 12 5 1289 317 296 68 12 chr5 92369742 92369903 -60167356 - L1MC5 LINE L1 -50 7911 7742 5 1289 1033 197 14 24 chr5 92369916 92370124 -60167135 - B3 SINE B2 -6 210 5 5 1289 923 249 100 44 chr5 92370173 92370519 -60166740 - L1MB8 LINE L1 -5 6173 5806 5 1289 800 232 74 25 chr5 92370519 92370722 -60166537 - B3 SINE B2 -3 213 1 5 1289 923 249 100 44 chr5 92370722 92370736 -60166523 - L1MB8 LINE L1 -373 5805 5793 5 1289 378 0 0 0 chr5 92371676 92371718 -60165541 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 5 1289 784 244 118 0 chr5 92371813 92372042 -60165217 + ORR1D1 LTR MaLR 1 256 -118 5 1289 245 294 138 0 chr5 92372645 92372754 -60164505 - MIR SINE MIR -136 126 3 5 1289 558 252 72 46 chr5 92374401 92374638 -60162621 + L1M3 LINE L1 3262 3504 -2636 5 1289 390 321 35 24 chr5 92374638 92374807 -60162452 + B3A SINE B2 1 171 -27 5 1289 378 0 0 0 chr5 92374807 92374849 -60162410 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1289 1657 81 88 66 chr5 92374849 92375154 -60162105 + ORR1A2 LTR MaLR 8 319 -8 5 1289 300 181 168 11 chr5 92375211 92375306 -60161953 + L1M3 LINE L1 3489 3598 -2545 5 1289 260 291 153 23 chr5 92375382 92375558 -60161701 - RLTR12B LTR ERVK -31 497 299 5 1289 750 191 0 0 chr5 92375634 92375770 -60161489 + B1_Mur4 SINE Alu 15 150 0 5 1289 322 275 137 41 chr5 92375842 92376039 -60161220 - RLTR12B LTR ERVK -265 263 48 5 1289 233 252 78 39 chr5 92376064 92376167 -60161092 + L1MC LINE L1 3620 3726 -2420 5 1289 237 215 215 0 chr5 92376192 92376271 -60160988 + L1M3 LINE L1 4007 4102 -2038 5 1289 1993 176 87 10 chr5 92376329 92376720 -60160539 - MTC LTR MaLR 0 421 1 5 1289 268 134 38 44 chr5 92376858 92376926 -60160333 - PB1D10 SINE Alu 0 117 54 5 1289 198 0 0 0 chr5 92376960 92376982 -60160277 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1289 352 228 0 0 chr5 92377032 92377111 -60160148 - B3A SINE B2 -115 83 5 5 1289 1140 280 53 20 chr5 92377119 92377516 -60159743 - Lx8 LINE L1 -129 7344 6935 5 1289 1125 82 0 0 chr5 92378104 92378250 -60159009 + B1_Mus2 SINE Alu 1 146 -1 5 1289 423 0 0 0 chr5 92378250 92378297 -60158962 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1289 731 93 202 0 chr5 92379517 92379646 -60157613 + B2_Mm1t SINE B2 1 155 -38 5 1289 220 124 0 28 chr5 92379679 92379739 -60157520 + B2_Mm2 SINE B2 46 101 -115 5 1289 212 323 0 0 chr5 92379783 92379848 -60157411 - B4A SINE B4 -226 66 2 5 1289 432 259 83 7 chr5 92379851 92379995 -60157264 + L1MB7 LINE L1 6023 6177 -7 5 1289 1163 55 0 7 chr5 92381172 92381319 -60155940 - B1_Mus2 SINE Alu 0 147 2 5 1289 726 171 16 0 chr5 92382387 92382516 -60154743 + RSINE1 SINE B4 3 133 -32 5 1289 187 347 31 10 chr5 92382760 92382856 -60154403 + MIR SINE MIR 49 146 -62 5 1289 259 247 61 12 chr5 92383148 92383230 -60154029 - B1F1 SINE Alu -60 89 4 5 1289 1920 196 50 46 chr5 92383904 92384321 -60152938 + MTC LTR MaLR 1 419 -2 5 1289 285 227 179 28 chr5 92384892 92385037 -60152222 - L1MC4a LINE L1 -1984 5898 5732 5 1289 305 272 67 0 chr5 92385208 92385387 -60151872 - L1MC4a LINE L1 -2455 5427 5232 5 1289 370 151 0 52 chr5 92385399 92385476 -60151783 + B1_Mm SINE Alu 75 147 0 5 1289 883 163 14 0 chr5 92385722 92385869 -60151390 + B1_Mur4 SINE Alu 1 149 -1 5 1289 227 231 119 46 chr5 92385967 92386076 -60151183 + Looper DNA PiggyBac 638 754 -804 5 1289 320 155 17 0 chr5 92386097 92386155 -60151104 + B1_Mur4 SINE Alu 1 59 -91 5 1289 1231 202 109 12 chr5 92386181 92386501 -60150758 + ORR1D2 LTR MaLR 1 351 -19 6 1289 3032 92 2 7 chr5 92387464 92387914 -60149345 + MT-int LTR MaLR 199 646 -452 6 1289 594 69 0 11 chr5 92387916 92388004 -60149255 + ORR1D2 LTR MaLR 321 407 0 6 1289 2025 186 48 20 chr5 92388150 92388544 -60148715 + MTB_Mm LTR MaLR 1 405 -2 6 1289 321 89 0 0 chr5 92388755 92388800 -60148459 + (T)n Simple_repeat Simple_repeat 1 45 0 6 1289 1228 48 0 0 chr5 92388800 92388947 -60148312 - B1_Mus2 SINE Alu 0 147 1 6 1289 244 271 29 0 chr5 92389048 92389118 -60148141 - Charlie1 DNA MER1_type -23 2758 2687 6 1289 430 300 183 8 chr5 92389155 92389417 -60147842 - Charlie1 DNA MER1_type -853 1928 1621 6 1289 303 28 0 0 chr5 92389427 92389463 -60147796 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 6 1289 755 208 43 48 chr5 92389475 92389694 -60147565 + MTD LTR MaLR 196 398 -21 6 1289 348 274 296 9 chr5 92389761 92390089 -60147170 + L2 LINE L2 1705 2126 -1293 6 1289 210 91 0 0 chr5 92391745 92391778 -60145481 + (TCC)n Simple_repeat Simple_repeat 2 34 0 6 1289 1545 27 16 0 chr5 92393751 92393934 -60143325 + B2_Mm1a SINE B2 2 187 -6 6 1289 309 151 0 0 chr5 92394038 92394091 -60143168 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1289 212 0 0 35 chr5 92394442 92394471 -60142788 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1289 936 55 0 23 chr5 92394471 92394602 -60142657 - B1_Mus1 SINE Alu -9 139 12 6 1289 1151 54 0 13 chr5 92394811 92394960 -60142299 + B1_Mus1 SINE Alu 1 147 -1 6 1289 210 176 0 0 chr5 92394998 92395049 -60142210 + A-rich Low_complexity Low_complexity 1 51 0 6 1289 512 317 98 15 chr5 92396039 92396652 -60140607 - L1MEc LINE L1 -1387 4932 4249 6 1289 216 182 0 22 chr5 92396897 92396909 -60140350 + polypurine Low_complexity Low_complexity 2 13 0 6 1289 1256 27 0 0 chr5 92396909 92397055 -60140204 + B1_Mus2 SINE Alu 2 147 0 6 1289 216 182 0 22 chr5 92397055 92397087 -60140172 + polypurine Low_complexity Low_complexity 14 45 0 6 1289 263 265 143 0 chr5 92397220 92397367 -60139892 - L1MEc LINE L1 -3115 3204 3037 6 1289 260 333 103 13 chr5 92397660 92397894 -60139365 - L1MEc LINE L1 -6126 274 20 6 1289 214 283 0 77 chr5 92398168 92398233 -60139026 + ID SINE ID 1 60 -164 6 1289 1209 54 0 0 chr5 92399713 92399860 -60137399 + B1_Mus2 SINE Alu 1 147 0 6 1289 516 155 59 68 chr5 92400623 92400741 -60136518 + PB1D9 SINE Alu 3 119 -1 6 1289 532 237 147 106 chr5 92401452 92401622 -60135637 - B3A SINE B2 -14 179 3 6 1289 477 242 10 0 chr5 92401622 92401721 -60135538 - PB1D10 SINE Alu -5 112 13 6 1289 3558 13 5 0 chr5 92401911 92402305 -60134954 - MTA_Mm LTR MaLR 0 396 1 6 1289 341 299 112 0 chr5 92403006 92403140 -60134119 - Charlie10a DNA MER1_type -76 204 56 6 1289 3196 70 0 17 chr5 92403599 92404006 -60133253 + MTB LTR MaLR 1 400 0 6 1289 375 226 19 47 chr5 92404012 92404119 -60133140 + MLT1A1 LTR MaLR 303 406 -2 6 1289 202 301 105 40 chr5 92404612 92404764 -60132495 - MIR SINE MIR -26 236 75 6 1289 240 35 0 0 chr5 92405479 92405508 -60131751 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1289 492 239 22 7 chr5 92405513 92405652 -60131607 - B1F1 SINE Alu -8 141 1 6 1290 227 245 20 0 chr5 92405915 92405964 -60131295 - L1MC5 LINE L1 -385 7576 7527 6 1290 993 287 35 56 chr5 92405996 92406359 -60130900 - MTD LTR MaLR 0 419 61 6 1290 1879 148 115 0 chr5 92406359 92406697 -60130562 - ORR1C1 LTR MaLR 0 378 2 6 1290 993 287 35 56 chr5 92406697 92406761 -60130498 - MTD LTR MaLR -359 60 1 6 1290 219 191 0 0 chr5 92406975 92407017 -60130242 + MIR SINE MIR 109 150 -112 6 1290 1154 69 14 0 chr5 92407017 92407161 -60130098 + B1_Mm SINE Alu 2 147 0 6 1290 306 0 0 0 chr5 92407161 92407195 -60130064 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1290 204 345 46 0 chr5 92407282 92407369 -60129890 - MIR SINE MIR -73 135 45 6 1290 657 228 8 0 chr5 92408401 92408528 -60128731 + RSINE1 SINE B4 3 130 -35 6 1290 306 0 0 0 chr5 92408536 92408570 -60128689 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1290 492 18 0 0 chr5 92408571 92408628 -60128631 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 6 1290 694 307 5 20 chr5 92408641 92408837 -60128422 - B3A SINE B2 -5 193 1 6 1290 582 332 25 50 chr5 92409853 92410170 -60127089 - MLT2D LTR ERVL -15 399 91 6 1290 4099 138 86 75 chr5 92410190 92411070 -60126189 - RMER19B LTR ERVK -12 890 1 6 1290 232 318 34 0 chr5 92411070 92411157 -60126102 - MLT2D LTR ERVL -465 91 2 6 1290 1067 66 20 0 chr5 92411174 92411325 -60125934 + B2_Mm2 SINE B2 27 180 -15 6 1290 201 136 45 0 chr5 92411358 92411402 -60125857 + A-rich Low_complexity Low_complexity 5 50 0 6 1290 274 293 146 5 chr5 92411731 92411938 -60125321 + 7SK RNA RNA 2 237 -94 6 1290 526 331 0 0 chr5 92412281 92412426 -60124833 - B1F SINE Alu -3 146 2 6 1290 433 319 208 23 chr5 92412515 92412957 -60124302 + L2a LINE L2 2542 3065 -354 6 1290 204 293 134 43 chr5 92413040 92413204 -60124055 + L2a LINE L2 3226 3404 -22 6 1290 277 211 151 32 chr5 92413210 92413303 -60123956 + PB1 SINE Alu 22 125 -2 6 1290 863 165 12 0 chr5 92413584 92413754 -60123505 + GA-rich Low_complexity Low_complexity 2 173 0 6 1290 393 321 71 96 chr5 92413835 92413859 -60123400 + ORR1E LTR MaLR 4 27 -332 6 1290 3418 33 0 8 chr5 92413859 92414258 -60123001 - MTA_Mm LTR MaLR 0 396 1 6 1290 393 321 71 96 chr5 92414258 92414598 -60122661 + ORR1E LTR MaLR 28 359 0 6 1290 343 320 16 32 chr5 92414644 92414770 -60122489 - PB1 SINE Alu -3 124 1 6 1290 2055 159 52 11 chr5 92414938 92415307 -60121952 + ORR1C2 LTR MaLR 1 384 0 6 1290 1399 168 105 10 chr5 92415607 92415902 -60121357 + ORR1D1 LTR MaLR 1 323 -51 6 1290 1186 128 18 45 chr5 92415903 92416123 -60121136 + URR1A DNA MER1_type 2 215 -11 6 1290 287 153 0 92 chr5 92416121 92416186 -60121073 + ORR1D1 LTR MaLR 316 374 0 6 1290 620 240 7 40 chr5 92417751 92417903 -60119356 + B1_Mur2 SINE Alu 2 148 -1 6 1290 37 23 0 0 chr5 92418822 92418866 -60118393 + AT_rich Low_complexity Low_complexity 1 44 0 6 1290 247 278 0 27 chr5 92418981 92419055 -60118204 - L2a LINE L2 -42 3384 3313 6 1290 1220 41 7 0 chr5 92419455 92419601 -60117658 - B1_Mus1 SINE Alu 0 148 2 6 1290 693 176 182 0 chr5 92420510 92420669 -60116590 - B3 SINE B2 0 216 29 6 1290 494 286 0 0 chr5 92421559 92421671 -60115588 + B4A SINE B4 177 288 -4 6 1290 1399 70 32 0 chr5 92422005 92422192 -60115067 + B2_Mm1t SINE B2 1 193 0 6 1290 219 91 52 52 chr5 92422279 92422337 -60114922 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 6 1290 2466 58 169 3 chr5 92422627 92422970 -60114289 - MTB LTR MaLR 0 400 1 6 1290 198 0 0 0 chr5 92422990 92423012 -60114247 + (CAA)n Simple_repeat Simple_repeat 2 23 0 6 1290 281 282 168 14 chr5 92423205 92423414 -60113845 - L1ME3 LINE L1 -188 5974 5734 6 1290 552 27 0 0 chr5 92425334 92425407 -60111852 + B1_Mus2 SINE Alu 75 147 0 6 1290 1312 80 0 56 chr5 92425423 92425621 -60111638 + B2_Mm2 SINE B2 2 188 -7 6 1290 211 254 51 0 chr5 92425648 92425707 -60111552 + RSINE1 SINE B4 89 150 -15 6 1290 205 176 0 0 chr5 92426686 92426720 -60110539 + (TAGG)n Simple_repeat Simple_repeat 1 34 0 6 1290 221 75 25 0 chr5 92426818 92426858 -60110401 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 6 1290 533 100 21 53 chr5 92426863 92426958 -60110301 - B1_Mur4 SINE Alu 0 150 59 6 1290 1201 69 17 0 chr5 92426985 92427160 -60110099 - B2_Mm2 SINE B2 -3 192 15 6 1290 643 269 53 0 chr5 92427187 92427358 -60109901 + B3A SINE B2 1 180 -18 6 1290 25 31 0 0 chr5 92427375 92427407 -60109852 + AT_rich Low_complexity Low_complexity 1 32 0 6 1290 908 174 97 29 chr5 92427543 92427714 -60109545 - URR1A DNA MER1_type 0 226 39 6 1290 3167 119 0 30 chr5 92427714 92428174 -60109085 + RLTR41 LTR ERV1 1 446 0 6 1290 908 174 97 29 chr5 92428174 92428209 -60109050 - URR1A DNA MER1_type -188 38 6 6 1290 216 0 0 0 chr5 92428783 92428807 -60108452 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1290 480 18 0 0 chr5 92428812 92428869 -60108390 + (GA)n Simple_repeat Simple_repeat 1 57 0 6 1290 261 163 61 0 chr5 92428946 92428995 -60108264 - B3 SINE B2 -163 53 2 6 1290 605 221 36 7 chr5 92429189 92429326 -60107933 + B1_Mur1 SINE Alu 4 144 -5 6 1290 435 19 0 0 chr5 92429328 92429380 -60107879 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 6 1290 614 13 13 0 chr5 92429381 92429456 -60107803 + (GA)n Simple_repeat Simple_repeat 1 76 0 6 1290 279 0 0 0 chr5 92429514 92429545 -60107714 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1290 415 217 28 9 chr5 92429555 92429662 -60107597 - B1F2 SINE Alu -2 147 39 6 1290 225 326 10 20 chr5 92430314 92430414 -60106845 + L2a LINE L2 3328 3426 0 6 1290 875 244 91 0 chr5 92430775 92430972 -60106287 + B3 SINE B2 1 215 -1 6 1290 227 247 48 24 chr5 92431976 92432059 -60105200 + B3A SINE B2 98 182 -16 6 1290 207 198 37 12 chr5 92432860 92432942 -60104317 + (TATAA)n Simple_repeat Simple_repeat 4 87 0 6 1290 380 236 34 0 chr5 92432953 92433042 -60104217 + B3 SINE B2 2 93 -123 6 1290 222 246 15 30 chr5 92433160 92433227 -60104032 - PB1D10 SINE Alu 0 117 52 6 1290 344 197 28 0 chr5 92433577 92433648 -60103611 - B3 SINE B2 -79 137 65 6 1290 1175 61 0 13 chr5 92434425 92434565 -60102694 + B1_Mm SINE Alu 1 140 -7 6 1290 495 45 0 0 chr5 92434565 92434631 -60102628 + (CAAA)n Simple_repeat Simple_repeat 2 67 0 6 1290 242 280 101 51 chr5 92438209 92438367 -60098892 + YREP_Mm Unknown Unknown 135 300 -1512 6 1290 584 295 0 7 chr5 92438239 92438389 -60098870 - ID_B1 SINE B4 0 224 76 6 1290 520 241 241 0 chr5 92438405 92438579 -60098680 + B3 SINE B2 1 216 0 6 1290 210 187 171 13 chr5 92438613 92438689 -60098570 + PB1D10 SINE Alu 29 116 -1 7 1290 626 312 5 25 chr5 92438993 92439190 -60098069 + B4 SINE B4 48 240 -52 7 1290 260 337 35 20 chr5 92439429 92439632 -60097627 + MusHAL1 LINE L1 358 563 -2149 7 1290 1214 54 0 0 chr5 92439687 92439834 -60097425 + B1_Mm SINE Alu 1 147 0 7 1290 345 159 0 0 chr5 92439834 92439897 -60097362 + GA-rich Low_complexity Low_complexity 3 65 0 7 1290 1819 310 92 36 chr5 92440140 92441640 -60095619 + L1M3 LINE L1 2061 3673 -2467 7 1290 384 22 0 0 chr5 92441640 92441685 -60095574 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1290 1819 310 92 34 chr5 92441685 92441794 -60095465 + L1M3 LINE L1 3674 3785 -2355 7 1290 671 186 96 15 chr5 92441794 92441930 -60095329 + B1_Mur2 SINE Alu 3 149 0 7 1290 1661 305 120 58 chr5 92441930 92442147 -60095112 + L1M3 LINE L1 3758 3994 -1886 7 1290 1581 165 89 0 chr5 92442147 92442462 -60094797 - ORR1C1 LTR MaLR -35 343 1 7 1290 1661 305 120 58 chr5 92442462 92443808 -60093451 + L1M3 LINE L1 3995 5473 -407 7 1290 493 81 0 86 chr5 92443808 92443889 -60093370 + B2_Mm2 SINE B2 1 74 -121 7 1290 339 85 0 0 chr5 92443901 92443948 -60093311 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1290 571 316 114 24 chr5 92443982 92444358 -60092901 + L1_Rod LINE L1 5431 5840 -7 7 1290 315 82 0 0 chr5 92444359 92444388 -60092871 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1290 997 39 138 0 chr5 92444388 92444518 -60092741 + B1_Mus1 SINE Alu 1 148 0 7 1290 315 82 0 0 chr5 92444518 92444537 -60092722 + (A)n Simple_repeat Simple_repeat 1 19 0 7 1290 1420 105 0 21 chr5 92444837 92445031 -60092228 + B2_Mm2 SINE B2 1 190 -5 7 1290 25 31 0 0 chr5 92445099 92445131 -60092128 + AT_rich Low_complexity Low_complexity 1 32 0 7 1290 265 345 121 50 chr5 92447010 92447519 -60089740 - L2a LINE L2 -44 3382 2826 7 1290 2867 82 11 13 chr5 92447935 92448317 -60088942 + L1Md_F2 LINE L1 6202 6582 0 7 1290 251 54 27 0 chr5 92449498 92449535 -60087724 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 7 1290 309 302 57 25 chr5 92449805 92449927 -60087332 + RMER12 LTR ERVK 725 850 -472 7 1290 1071 68 0 139 chr5 92449992 92450164 -60087095 - B1_Mus1 SINE Alu 0 148 1 7 1290 556 319 112 50 chr5 92450176 92450632 -60086627 + RMER5 LTR ERV1 24 507 -27 7 1290 959 236 34 5 chr5 92450846 92451050 -60086209 + B3 SINE B2 2 211 -5 7 1290 1079 288 155 22 chr5 92451627 92452253 -60085006 + Charlie1a DNA MER1_type 261 969 -486 7 1290 454 250 26 150 chr5 92452256 92452482 -60084777 + B3A SINE B2 1 198 0 7 1290 325 291 106 50 chr5 92452509 92452650 -60084609 + B1F1 SINE Alu 1 149 0 7 1290 330 211 150 101 chr5 92452692 92452919 -60084340 + Charlie1a DNA MER1_type 958 1195 -260 7 1290 764 286 21 2 chr5 92452923 92453121 -60084138 + B3A SINE B2 2 205 -11 7 1290 228 35 0 0 chr5 92453122 92453151 -60084108 + (GA)n Simple_repeat Simple_repeat 2 30 0 7 1290 468 0 0 0 chr5 92453222 92453274 -60083985 + (CAG)n Simple_repeat Simple_repeat 3 54 0 7 1290 3617 23 21 0 chr5 92453505 92453893 -60083366 + MTA_Mm LTR MaLR 1 396 0 7 1290 454 288 27 0 chr5 92454409 92454520 -60082739 + PB1D10 SINE Alu 2 115 -2 7 1290 1473 60 27 27 chr5 92454600 92454788 -60082471 + B2_Mm1t SINE B2 1 188 -5 7 1290 606 240 53 33 chr5 92454819 92454970 -60082289 - RSINE1 SINE B4 0 165 12 7 1290 1919 150 37 34 chr5 92454988 92455312 -60081947 + ORR1A4 LTR MaLR 1 325 -4 7 1290 448 293 23 39 chr5 92455342 92455406 -60081853 + B1F1 SINE Alu 1 62 -87 7 1290 1261 156 27 0 chr5 92455406 92455592 -60081667 - B2_Mm2 SINE B2 -4 191 1 7 1290 448 293 23 39 chr5 92455592 92455655 -60081604 + B1F1 SINE Alu 63 125 -24 7 1290 862 167 14 0 chr5 92455690 92455828 -60081431 - B1_Mur4 SINE Alu -8 142 3 7 1290 379 188 0 30 chr5 92455864 92455963 -60081296 + GA-rich Low_complexity Low_complexity 3 98 0 7 1290 1011 231 19 9 chr5 92455971 92456185 -60081074 + B3 SINE B2 1 216 0 7 1290 794 186 50 0 chr5 92456203 92456343 -60080916 + B1_Mm SINE Alu 1 147 0 7 1290 216 0 0 0 chr5 92456391 92456415 -60080844 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1290 774 194 79 0 chr5 92456424 92456563 -60080696 + B1_Mur4 SINE Alu 1 150 0 7 1290 558 43 0 0 chr5 92456564 92456633 -60080626 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 7 1290 298 304 18 9 chr5 92456721 92456834 -60080425 + PB1D7 SINE Alu 7 120 0 7 1290 523 229 139 69 chr5 92457183 92457385 -60079874 + B3 SINE B2 1 216 0 7 1290 977 81 65 29 chr5 92457395 92457534 -60079725 + B1_Mur4 SINE Alu 4 147 -3 7 1290 258 288 185 111 chr5 92457743 92457956 -60079303 - B4 SINE B4 -2 290 55 7 1290 1353 246 94 17 chr5 92457956 92458308 -60078951 - MTE2b LTR MaLR 0 379 1 7 1290 258 288 185 111 chr5 92458308 92458364 -60078895 - B4 SINE B4 -238 54 1 7 1290 1170 166 224 24 chr5 92458828 92458998 -60078261 + Lx9 LINE L1 7296 7471 -173 7 1290 225 0 0 0 chr5 92458998 92459023 -60078236 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1290 1170 166 224 24 chr5 92459023 92459142 -60078117 + Lx9 LINE L1 7472 7642 -2 7 1290 3304 55 10 0 chr5 92459164 92459561 -60077698 + L1Md_F2 LINE L1 6182 6582 0 7 1290 1414 83 39 0 chr5 92459701 92459881 -60077378 + B2_Mm2 SINE B2 1 187 -8 7 1290 307 277 16 125 chr5 92461109 92461237 -60076022 + PB1D10 SINE Alu 4 117 0 7 1290 1658 42 0 11 chr5 92461285 92461476 -60075783 - B2_Mm1a SINE B2 -3 190 2 7 1290 642 175 0 20 chr5 92461877 92462023 -60075236 + (TG)n Simple_repeat Simple_repeat 2 144 0 7 1290 227 268 82 10 chr5 92463087 92463185 -60074074 - MIR SINE MIR -30 232 128 7 1290 186 133 0 0 chr5 92463467 92463497 -60073762 + (TATG)n Simple_repeat Simple_repeat 2 31 0 7 1290 912 140 311 0 chr5 92463527 92463691 -60073568 - B3 SINE B2 0 216 2 7 1290 851 206 14 0 chr5 92463958 92464104 -60073155 + B1_Mur4 SINE Alu 2 149 -1 7 1290 477 242 53 7 chr5 92464274 92464424 -60072835 - Lx9 LINE L1 0 7644 7488 7 1290 1520 216 67 28 chr5 92464491 92464852 -60072407 + MTEb LTR MaLR 1 375 -4 7 1290 234 0 0 0 chr5 92464949 92464975 -60072284 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1290 1188 82 0 7 chr5 92464975 92465115 -60072144 - B1_Mus1 SINE Alu -8 140 1 7 1290 219 205 0 0 chr5 92465354 92465393 -60071866 - B3A SINE B2 -95 103 65 7 1290 572 289 70 0 chr5 92465470 92465612 -60071647 + RSINE1 SINE B4 2 153 -12 7 1290 473 168 98 74 chr5 92465750 92465872 -60071387 + MT2B LTR ERVL 152 276 -325 7 1290 1033 67 0 0 chr5 92465765 92465899 -60071360 + B1_Mus1 SINE Alu 15 148 0 7 1290 221 0 0 33 chr5 92465924 92465954 -60071305 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1290 22 35 0 0 chr5 92466391 92466420 -60070839 + AT_rich Low_complexity Low_complexity 1 29 0 7 1290 330 203 47 0 chr5 92466919 92467012 -60070247 + ID4_ SINE ID 1 99 -53 7 1290 710 182 25 95 chr5 92467312 92467470 -60069789 - B1_Mm SINE Alu 0 147 1 7 1290 230 246 54 14 chr5 92467478 92467552 -60069707 + L1MEg LINE L1 1249 1325 -4759 7 1290 1451 55 38 5 chr5 92467609 92467793 -60069466 - B2_Mm2 SINE B2 -5 190 1 7 1290 436 229 349 23 chr5 92467829 92468044 -60069215 + B4 SINE B4 2 286 -6 7 1290 338 204 0 10 chr5 92468082 92468186 -60069073 + (CA)n Simple_repeat Simple_repeat 1 103 0 7 1290 358 143 36 0 chr5 92468656 92468712 -60068547 + B1_Mur4 SINE Alu 3 60 -90 7 1290 220 250 0 0 chr5 92468716 92468768 -60068491 + GA-rich Low_complexity Low_complexity 2 53 0 7 1290 758 103 0 0 chr5 92468770 92468877 -60068382 + B1_Mur3 SINE Alu 42 148 -1 7 1290 738 201 87 54 chr5 92468889 92469073 -60068186 + B3 SINE B2 27 216 0 7 1290 737 201 63 21 chr5 92469081 92469223 -60068036 + B1_Mur2 SINE Alu 2 149 0 7 1290 29 47 0 0 chr5 92469518 92469561 -60067698 + AT_rich Low_complexity Low_complexity 1 43 0 7 1290 299 185 14 58 chr5 92469561 92469630 -60067629 + ID4_ SINE ID 1 66 -17 7 1290 470 108 0 12 chr5 92469633 92469717 -60067542 + (CA)n Simple_repeat Simple_repeat 2 84 0 7 1290 29 0 0 0 chr5 92469856 92469885 -60067374 + AT_rich Low_complexity Low_complexity 1 29 0 7 1290 212 0 36 0 chr5 92469943 92469971 -60067288 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1290 384 40 0 0 chr5 92470271 92470321 -60066938 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1290 227 228 0 81 chr5 92470322 92470384 -60066875 - ID4 SINE ID -23 60 4 7 1290 21 36 0 0 chr5 92470583 92470611 -60066648 + AT_rich Low_complexity Low_complexity 1 28 0 7 1290 36 40 0 0 chr5 92472011 92472061 -60065198 + GC_rich Low_complexity Low_complexity 1 50 0 7 1290 269 26 26 0 chr5 92472727 92472765 -60064494 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1290 856 189 131 6 chr5 92472897 92473073 -60064186 - B3 SINE B2 -14 202 5 7 1290 468 314 16 44 chr5 92473317 92473500 -60063759 + ID_B1 SINE B4 13 190 -34 7 1290 516 204 14 35 chr5 92473791 92473920 -60063339 + B1_Mur1 SINE Alu 1 147 -2 7 1290 1329 27 0 0 chr5 92474179 92474325 -60062934 + B1_Mus2 SINE Alu 2 147 0 7 1290 370 290 131 22 chr5 92474627 92474666 -60062593 - CYRA11_Mm Unknown Y-chromosome -196 421 176 7 1290 874 142 208 0 chr5 92474666 92474849 -60062410 + URR1A DNA MER1_type 1 221 -5 7 1290 1325 34 0 0 chr5 92474850 92474997 -60062262 + B1_Mus1 SINE Alu 2 148 0 7 1290 240 111 0 0 chr5 92474997 92475033 -60062226 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1290 559 217 30 23 chr5 92475068 92475200 -60062059 + L1MB7 LINE L1 6005 6137 -47 7 1290 345 319 82 0 chr5 92475200 92475335 -60061924 + RSINE1 SINE B4 20 165 0 8 1290 1287 113 23 0 chr5 92475888 92476065 -60061194 + B2_Mm2 SINE B2 1 181 -14 8 1290 352 129 398 19 chr5 92476097 92476205 -60061054 + B2_Mm2 SINE B2 47 195 0 8 1290 1263 41 7 0 chr5 92476225 92476370 -60060889 + B1_Mm SINE Alu 2 147 0 8 1290 359 226 301 0 chr5 92476400 92476493 -60060766 + B1_Mur2 SINE Alu 1 121 -28 8 1290 782 250 21 16 chr5 92476808 92476999 -60060260 + B3 SINE B2 1 192 -24 8 1290 318 298 118 64 chr5 92477189 92477393 -60059866 + MLT1J1 LTR MaLR 102 316 -128 8 1290 405 211 113 21 chr5 92477704 92477801 -60059458 + B1_Mur1 SINE Alu 42 147 -2 8 1290 1628 58 0 16 chr5 92478011 92478205 -60059054 - B2_Mm1t SINE B2 -1 192 2 8 1290 599 168 76 97 chr5 92479265 92479410 -60057849 + B1_Mus1 SINE Alu 1 142 -6 8 1290 270 0 0 0 chr5 92479622 92479652 -60057607 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1290 335 213 40 13 chr5 92479992 92480068 -60057191 - ID_B1 SINE B4 -62 162 85 8 1290 765 146 51 38 chr5 92480653 92480810 -60056449 - B2_Mm2 SINE B2 -31 164 6 8 1290 1387 52 17 23 chr5 92480819 92480996 -60056263 - B2_Mm2 SINE B2 -19 176 1 8 1290 196 256 45 68 chr5 92482877 92482965 -60054294 + L3 LINE CR1 3569 3654 -835 8 1290 408 181 139 28 chr5 92485667 92485775 -60051484 + PB1D7 SINE Alu 1 120 0 8 1290 24 0 0 0 chr5 92486306 92486330 -60050929 + AT_rich Low_complexity Low_complexity 1 24 0 8 1290 875 195 91 5 chr5 92486408 92486594 -60050665 - B3 SINE B2 -13 203 2 8 1290 28 0 0 0 chr5 92487111 92487139 -60050120 + AT_rich Low_complexity Low_complexity 1 28 0 8 1290 338 166 220 0 chr5 92487619 92487704 -60049555 + PB1D10 SINE Alu 7 109 -8 8 1290 428 198 0 95 chr5 92488315 92488410 -60048849 + B1_Mur3 SINE Alu 2 87 -62 8 1290 751 178 214 23 chr5 92488497 92488670 -60048589 - B3 SINE B2 -10 206 1 8 1290 559 197 30 45 chr5 92489039 92489172 -60048087 + B1_Mur1 SINE Alu 9 139 -10 8 1290 512 257 153 6 chr5 92489174 92489350 -60047909 + B3 SINE B2 1 202 -14 8 1290 22 35 0 0 chr5 92489353 92489382 -60047877 + AT_rich Low_complexity Low_complexity 1 29 0 8 1290 369 0 0 0 chr5 92490120 92490161 -60047098 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1290 432 321 30 0 chr5 92490169 92490300 -60046959 - B3A SINE B2 -21 177 43 8 1290 523 212 95 36 chr5 92490268 92490405 -60046854 - B3A SINE B2 -53 145 1 8 1290 250 266 139 28 chr5 92490640 92490781 -60046478 + MIRb SINE MIR 43 207 -61 8 1290 474 233 22 0 chr5 92490783 92490873 -60046386 + PB1D9 SINE Alu 17 108 -12 8 1290 742 241 10 55 chr5 92490954 92491156 -60046103 + B3 SINE B2 2 194 -22 8 1290 1247 22 0 0 chr5 92491471 92491606 -60045653 - B1_Mus2 SINE Alu -11 136 2 8 1290 200 111 74 0 chr5 92491941 92491995 -60045264 + (TA)n Simple_repeat Simple_repeat 2 59 0 8 1290 604 196 59 22 chr5 92493770 92493906 -60043353 - B1F2 SINE Alu 0 149 9 8 1290 354 261 125 9 chr5 92493943 92494055 -60043204 - B3 SINE B2 -24 192 68 8 1290 753 137 17 17 chr5 92494372 92494491 -60042768 - PB1D9 SINE Alu 0 120 2 8 1290 207 0 0 0 chr5 92494665 92494688 -60042571 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1290 221 309 59 0 chr5 92495844 92495912 -60041347 + ID_B1 SINE B4 78 149 -75 8 1290 230 306 23 23 chr5 92495851 92495938 -60041321 + PB1D7 SINE Alu 7 93 -27 8 1290 28 29 0 0 chr5 92496001 92496036 -60041223 + AT_rich Low_complexity Low_complexity 1 35 0 8 1290 1164 57 43 0 chr5 92496044 92496185 -60041074 + B1_Mus2 SINE Alu 1 147 0 8 1290 315 246 0 44 chr5 92496301 92496369 -60040890 - tRNA-Ala-GCG tRNA tRNA -7 68 4 8 1290 820 136 17 0 chr5 92496506 92496624 -60040635 + PB1D9 SINE Alu 1 120 0 8 1290 622 253 76 81 chr5 92496647 92496828 -60040431 + B3 SINE B2 7 187 -29 8 1290 1316 64 111 0 chr5 92496828 92497000 -60040259 + B2_Mm2 SINE B2 1 191 -4 8 1290 622 253 76 81 chr5 92497000 92497029 -60040230 + B3 SINE B2 188 215 -1 8 1290 566 229 203 11 chr5 92497041 92497218 -60040041 + B3 SINE B2 1 211 -5 8 1290 351 197 42 0 chr5 92497779 92497850 -60039409 + tRNA-Lys-AAG tRNA tRNA 3 76 0 8 1290 4022 121 77 29 chr5 92497852 92498477 -60038782 - RMER6A LTR ERVK 0 756 80 8 1290 3565 35 5 0 chr5 92498477 92498871 -60038388 + MTA_Mm LTR MaLR 1 396 0 8 1290 4022 121 77 29 chr5 92498871 92498962 -60038297 - RMER6A LTR ERVK -677 79 6 8 1290 1190 74 6 6 chr5 92499786 92499950 -60037309 + B2_Mm1t SINE B2 2 165 -28 8 1290 360 0 0 0 chr5 92499960 92500000 -60037259 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 8 1290 1152 74 0 0 chr5 92500151 92500299 -60036960 + B1_Mus1 SINE Alu 1 148 0 1 1290 753 256 36 0 chr5 92500737 92500932 -60036327 - B3 SINE B2 -14 202 1 2 1290 455 139 204 0 chr5 92501220 92501328 -60035931 + B1_Mur4 SINE Alu 1 130 -20 3 1290 306 0 0 0 chr5 92501942 92501976 -60035283 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1290 615 39 0 0 chr5 92501976 92502053 -60035206 + (GA)n Simple_repeat Simple_repeat 1 78 0 5 1290 447 275 35 123 chr5 92502444 92502530 -60034729 + B3 SINE B2 2 83 -133 6 1290 1173 43 0 0 chr5 92502530 92502668 -60034591 + B1_Mus2 SINE Alu 1 138 -9 7 1290 447 275 35 123 chr5 92502668 92502809 -60034450 + B3 SINE B2 84 209 -7 6 1290 232 327 76 9 chr5 92502896 92503001 -60034258 + B3A SINE B2 69 180 -18 8 1290 243 275 112 60 chr5 92503026 92503142 -60034117 + B3 SINE B2 6 127 -89 9 1290 333 155 0 0 chr5 92503189 92503247 -60034012 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1290 338 322 40 40 chr5 92503273 92503307 -60033952 + RSINE1 SINE B4 3 36 -129 1 1290 998 94 0 7 chr5 92503307 92503446 -60033813 + B1_Mm SINE Alu 1 138 -9 1 1290 216 0 0 0 chr5 92503446 92503470 -60033789 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1290 225 0 0 0 chr5 92503470 92503495 -60033764 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1290 338 322 40 40 chr5 92503495 92503584 -60033675 + RSINE1 SINE B4 37 126 -39 1 1290 1293 106 21 0 chr5 92503739 92503928 -60033331 + B2_Mm1t SINE B2 1 193 0 1 1290 237 318 25 68 chr5 92503952 92504070 -60033189 - B3 SINE B2 -53 163 51 1 1290 22 0 0 0 chr5 92504676 92504698 -60032561 + AT_rich Low_complexity Low_complexity 1 22 0 1 1290 1223 48 0 0 chr5 92504868 92505014 -60032245 + B1_Mm SINE Alu 1 146 -1 1 1290 319 333 29 0 chr5 92505057 92505159 -60032100 + PB1D7 SINE Alu 1 105 -15 1 1290 940 182 96 5 chr5 92505172 92505188 -60032071 - B3 SINE B2 -6 210 195 2 1290 387 0 0 0 chr5 92505188 92505231 -60032028 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1290 940 182 96 5 chr5 92505231 92505402 -60031857 - B3 SINE B2 -22 194 6 2 1290 847 126 22 62 chr5 92505440 92505618 -60031641 - B2_Mm2 SINE B2 -23 172 2 2 1290 430 185 227 15 chr5 92505952 92506084 -60031175 + B3 SINE B2 36 195 -21 2 1290 326 267 117 19 chr5 92506323 92506426 -60030833 - B1F SINE Alu -6 114 2 2 1290 1256 34 0 0 chr5 92506607 92506754 -60030505 + B1_Mus2 SINE Alu 1 147 0 2 1290 180 111 0 0 chr5 92506756 92506783 -60030476 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1290 686 210 144 22 chr5 92506800 92506980 -60030279 + B3 SINE B2 5 206 -10 2 1290 1061 58 58 0 chr5 92507202 92507341 -60029918 - B1_Mus2 SINE Alu 0 147 1 2 1290 275 192 138 25 chr5 92507556 92507636 -60029623 + RLTR25B LTR ERVK 421 509 -519 2 1290 766 40 0 0 chr5 92507578 92507679 -60029580 + B1_Mus2 SINE Alu 47 147 0 3 1290 300 294 35 56 chr5 92507679 92507823 -60029436 + L1MEg LINE L1 1882 2022 -4062 3 1290 415 299 53 41 chr5 92507977 92508148 -60029111 - ID_B1 SINE B4 -51 173 1 3 1290 308 24 24 0 chr5 92508171 92508212 -60029047 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1290 1517 77 0 5 chr5 92508851 92509046 -60028213 + B2_Mm2 SINE B2 2 195 0 3 1290 933 67 104 0 chr5 92509073 92509207 -60028052 + B1_Mus1 SINE Alu 1 148 0 3 1290 231 114 0 0 chr5 92509207 92509242 -60028017 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 3 1290 428 159 278 9 chr5 92509262 92509370 -60027889 - B1_Mur3 SINE Alu -8 141 5 3 1290 675 199 36 29 chr5 92509573 92509713 -60027546 + B1_Mur2 SINE Alu 2 142 -7 3 1290 221 279 38 0 chr5 92509812 92509891 -60027368 + B1_Mm SINE Alu 66 147 0 3 1290 465 138 216 0 chr5 92510796 92510912 -60026347 - B1_Mur3 SINE Alu -5 144 4 4 1290 589 109 54 18 chr5 92511131 92511243 -60026016 - B1_Mur2 SINE Alu -5 144 29 4 1290 198 0 0 0 chr5 92512897 92512919 -60024340 + (CTCG)n Simple_repeat Simple_repeat 1 22 0 4 1290 231 229 0 67 chr5 92513939 92514028 -60023231 - MIRb SINE MIR -73 195 113 4 1290 578 236 20 53 chr5 92514060 92514212 -60023047 + B1F2 SINE Alu 1 147 -2 4 1290 375 176 0 75 chr5 92514337 92514417 -60022842 - B1_Mus2 SINE Alu -1 146 73 4 1290 205 278 175 0 chr5 92514507 92514633 -60022626 - MER5A DNA MER1_type -21 168 21 4 1290 257 305 33 33 chr5 92515068 92515190 -60022069 + L2 LINE L2 2534 2655 -764 4 1290 279 0 0 0 chr5 92515297 92515328 -60021931 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 4 1290 583 124 2 1 chr5 92515328 92515434 -60021825 - B1_Mus1 SINE Alu -13 107 1 4 1290 781 154 107 51 chr5 92515895 92516073 -60021186 + B2_Mm2 SINE B2 1 188 -7 5 1290 1264 69 32 70 chr5 92516085 92516272 -60020987 + B2_Mm2 SINE B2 2 181 -14 5 1290 431 63 327 26 chr5 92516316 92516429 -60020830 + B2_Mm2 SINE B2 47 193 -2 5 1290 725 219 113 9 chr5 92516426 92516638 -60020621 + ORR1D2 LTR MaLR 137 370 0 5 1290 409 236 18 35 chr5 92516775 92516889 -60020370 + PB1D10 SINE Alu 6 117 0 5 1290 682 255 81 10 chr5 92516942 92517140 -60020119 + B3 SINE B2 4 215 -1 5 1290 1712 26 0 0 chr5 92517308 92517500 -60019759 - B2_Mm1a SINE B2 0 193 2 5 1290 244 128 0 0 chr5 92517767 92517806 -60019453 + B1_Mus1 SINE Alu 2 40 -108 5 1290 1197 28 14 0 chr5 92517864 92518008 -60019251 + B1_Mus2 SINE Alu 2 147 0 5 1290 1047 98 104 0 chr5 92518029 92518192 -60019067 + B2_Mm2 SINE B2 2 181 -14 5 1290 613 259 73 16 chr5 92518726 92518918 -60018341 + B3 SINE B2 1 203 -13 6 1290 303 71 0 0 chr5 92518944 92518986 -60018273 + (TC)n Simple_repeat Simple_repeat 2 43 0 6 1290 592 259 53 0 chr5 92518986 92519156 -60018103 + B3 SINE B2 38 216 0 6 1290 922 16 167 0 chr5 92519183 92519309 -60017950 + B1_Mm SINE Alu 1 147 0 6 1290 195 69 0 0 chr5 92519319 92519348 -60017911 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1290 267 323 10 20 chr5 92519590 92519688 -60017571 - PB1D10 SINE Alu -20 97 1 6 1290 1087 103 0 0 chr5 92519722 92519868 -60017391 + B1_Mus2 SINE Alu 2 147 0 6 1290 192 77 0 0 chr5 92519868 92519894 -60017365 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1290 369 133 22 140 chr5 92520236 92520336 -60016923 + ORR1C2 LTR MaLR 272 362 -22 6 1290 501 261 6 75 chr5 92520420 92520594 -60016665 + RSINE1 SINE B4 3 164 -1 6 1290 256 231 0 64 chr5 92520600 92520725 -60016534 + A-rich Low_complexity Low_complexity 4 120 0 7 1290 23 0 0 0 chr5 92521373 92521396 -60015863 + AT_rich Low_complexity Low_complexity 1 23 0 7 1290 247 170 0 21 chr5 92521412 92521460 -60015799 - B2_Mm2 SINE B2 -100 95 49 7 1290 858 70 252 7 chr5 92521477 92521620 -60015639 - B2_Mm1t SINE B2 -14 179 2 7 1290 252 0 0 0 chr5 92521990 92522018 -60015241 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1290 300 268 93 0 chr5 92522042 92522139 -60015120 + PB1 SINE Alu 1 106 -21 7 1290 21 36 0 0 chr5 92523132 92523160 -60014099 + AT_rich Low_complexity Low_complexity 1 28 0 7 1290 302 274 26 62 chr5 92523195 92523308 -60013951 + RSINE1 SINE B4 11 119 -46 7 1290 225 0 0 0 chr5 92523485 92523510 -60013749 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 7 1290 1060 115 0 0 chr5 92523514 92523670 -60013589 - B2_Mm2 SINE B2 -38 157 2 7 1290 2871 61 0 10 chr5 92524060 92524460 -60012799 + MTA_Mm LTR MaLR 1 396 0 8 1290 380 188 9 56 chr5 92524526 92524633 -60012626 + BC1_Mm scRNA scRNA 2 103 -49 8 1290 586 221 0 59 chr5 92524860 92524995 -60012264 - B1_Mur1 SINE Alu -11 138 12 8 1290 286 312 36 94 chr5 92525052 92525131 -60012128 + B1F SINE Alu 1 69 -80 8 1290 853 230 58 14 chr5 92525131 92525338 -60011921 + B3 SINE B2 1 216 0 8 1290 286 312 36 94 chr5 92525338 92525396 -60011863 + B1F SINE Alu 70 130 -19 8 1290 390 91 0 0 chr5 92525412 92525467 -60011792 + (TCTCCC)n Simple_repeat Simple_repeat 4 58 0 8 1290 572 115 0 11 chr5 92525467 92525555 -60011704 - B1_Mur4 SINE Alu -34 116 30 8 1290 297 128 0 0 chr5 92525788 92525835 -60011424 + (T)n Simple_repeat Simple_repeat 1 47 0 8 1290 539 216 87 16 chr5 92526285 92526412 -60010847 + B1_Mur4 SINE Alu 5 140 -10 8 1290 227 29 0 54 chr5 92526412 92526449 -60010810 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1290 376 322 12 56 chr5 92526569 92526730 -60010529 + RSINE1 SINE B4 1 154 -11 9 1290 288 77 0 0 chr5 92526794 92526833 -60010426 + (A)n Simple_repeat Simple_repeat 1 39 0 9 1290 396 163 56 84 chr5 92527348 92527455 -60009804 - B1_Mur2 SINE Alu 0 149 46 9 1290 260 98 0 19 chr5 92528303 92528337 -60008922 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 9 1290 1192 61 0 7 chr5 92528337 92528485 -60008774 + B1_Mm SINE Alu 1 147 0 9 1290 260 98 0 19 chr5 92528485 92528502 -60008757 + (CAAAAA)n Simple_repeat Simple_repeat 1 17 0 9 1290 188 0 74 0 chr5 92528736 92528763 -60008496 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 9 1290 286 48 0 0 chr5 92528769 92528811 -60008448 + B1_Mur4 SINE Alu 109 150 0 9 1290 226 232 86 14 chr5 92528842 92528912 -60008347 + L1ME3A LINE L1 5829 5903 -270 9 1290 642 188 8 0 chr5 92528926 92529043 -60008216 + B1F2 SINE Alu 16 133 -16 9 1290 228 130 43 0 chr5 92529044 92529090 -60008169 + (CAGA)n Simple_repeat Simple_repeat 2 49 0 1 1290 325 250 133 13 chr5 92529161 92529311 -60007948 + L1ME3A LINE L1 6006 6173 0 9 1290 410 266 57 101 chr5 92529313 92529472 -60007787 + B4 SINE B4 69 220 -72 1 1290 699 227 0 14 chr5 92529334 92529477 -60007782 + B1_Mur2 SINE Alu 8 148 -1 1 1290 211 343 15 0 chr5 92529587 92529654 -60007605 + ID4_ SINE ID 14 81 -2 1 1290 334 238 2 0 chr5 92529796 92529880 -60007379 - ID SINE ID -207 85 1 1 1290 660 46 0 0 chr5 92529928 92530015 -60007244 - B1_Mm SINE Alu 0 147 61 1 1290 736 108 0 9 chr5 92530009 92530121 -60007138 - B2_Mm2 SINE B2 -83 112 2 1 1290 350 220 86 159 chr5 92530122 92530273 -60006986 - B1_Mur2 SINE Alu 0 149 10 1 1290 1903 213 45 58 chr5 92530648 92531187 -60006072 + RMER5 LTR ERV1 1 532 -2 1 1290 427 170 27 45 chr5 92531268 92531379 -60005880 + B1F SINE Alu 40 148 -1 1 1290 322 296 23 0 chr5 92531471 92531559 -60005700 - ID_B1 SINE B4 -31 193 104 1 1290 1117 86 0 0 chr5 92531829 92531969 -60005290 + B1_Mus2 SINE Alu 2 141 -6 1 1290 288 271 35 76 chr5 92532350 92532373 -60004886 - B4A SINE B4 -148 144 124 1 1290 324 70 0 0 chr5 92532373 92532416 -60004843 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1290 288 271 35 76 chr5 92532416 92532536 -60004723 - B4A SINE B4 -169 123 7 1 1290 224 276 153 8 chr5 92532545 92532669 -60004590 - B4A SINE B4 -148 144 3 1 1290 252 122 0 0 chr5 92533235 92533276 -60003983 + (CCCCCT)n Simple_repeat Simple_repeat 2 42 0 1 1290 227 317 12 0 chr5 92533287 92533369 -60003890 + ID4_ SINE ID 1 83 0 1 1290 231 193 0 34 chr5 92533552 92533597 -60003662 + ID_B1 SINE B4 112 155 -69 1 1290 996 47 62 0 chr5 92533597 92533725 -60003534 + B1_Mm SINE Alu 2 137 -10 1 1290 231 193 0 34 chr5 92533725 92533738 -60003521 + ID_B1 SINE B4 156 168 -56 1 1290 246 262 25 12 chr5 92533750 92533831 -60003428 + ID_B1 SINE B4 143 224 0 1 1290 1602 31 5 5 chr5 92533968 92534160 -60003099 - B2_Mm1t SINE B2 -1 192 1 1 1290 333 206 43 22 chr5 92534212 92534314 -60002945 - PB1D9 SINE Alu 0 120 18 1 1290 1399 75 32 11 chr5 92534359 92534548 -60002711 - B2_Mm2 SINE B2 -2 193 1 1 1290 191 88 29 0 chr5 92534729 92534763 -60002496 + (TTGG)n Simple_repeat Simple_repeat 1 35 0 1 1290 565 115 84 28 chr5 92534770 92534877 -60002382 - B1_Mur4 SINE Alu -7 143 31 1 1290 827 116 0 0 chr5 92534948 92535069 -60002190 - B3 SINE B2 -88 128 8 1 1290 1243 55 0 0 chr5 92535098 92535244 -60002015 - B1_Mus2 SINE Alu 0 147 2 1 1290 342 0 0 0 chr5 92535336 92535374 -60001885 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1290 674 215 21 0 chr5 92535508 92535652 -60001607 + MLT1D LTR MaLR 249 395 -110 1 1290 1348 55 59 21 chr5 92536241 92536428 -60000831 - B2_Mm2 SINE B2 0 195 2 1 161 1051 116 0 0 chr5 92536732 92536879 -60000380 - B1_Mm SINE Alu 0 147 1 1 1291 1121 126 74 6 chr5 92536894 92537069 -60000190 - B2_Mm2 SINE B2 -6 189 3 1 1291 4723 26 11 0 chr5 92537294 92537834 -59999425 - L1Md_F3 LINE L1 -14 6570 6025 1 1291 281 26 0 26 chr5 92538202 92538241 -59999018 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 1 1291 1063 79 0 7 chr5 92538241 92538381 -59998878 - B1_Mm SINE Alu -8 139 1 1 1291 563 102 11 0 chr5 92538397 92538485 -59998774 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1291 388 238 12 0 chr5 92538497 92538577 -59998682 + B3A SINE B2 3 83 -115 1 1291 270 0 0 0 chr5 92538606 92538636 -59998623 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1291 275 72 0 23 chr5 92538665 92538708 -59998551 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1 1291 875 52 0 0 chr5 92538708 92538823 -59998436 - B1_Mus2 SINE Alu -8 139 25 1 1291 752 58 0 0 chr5 92540372 92540476 -59996783 + BC1_Mm scRNA scRNA 1 104 -48 1 1291 362 123 0 30 chr5 92540606 92540620 -59996639 + polypurine Low_complexity Low_complexity 1 14 0 1 1291 1623 31 5 10 chr5 92540620 92540800 -59996459 + B2_Mm1t SINE B2 2 182 -11 1 1291 1055 130 0 11 chr5 92540800 92540979 -59996280 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 1 1291 1623 31 5 10 chr5 92540979 92540991 -59996268 + B2_Mm1t SINE B2 183 193 0 1 1291 362 123 0 30 chr5 92540991 92541043 -59996216 + polypurine Low_complexity Low_complexity 15 65 0 1 1291 981 124 0 28 chr5 92541044 92541226 -59996033 + GA-rich Low_complexity Low_complexity 3 179 0 1 1291 663 37 330 27 chr5 92542287 92542399 -59994860 + B1_Mus2 SINE Alu 2 147 0 1 1291 1177 101 71 0 chr5 92542415 92542583 -59994676 - B2_Mm2 SINE B2 -14 181 2 1 1291 462 36 0 0 chr5 92542888 92542944 -59994315 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1291 1320 106 16 0 chr5 92544253 92544442 -59992817 - B2_Mm2 SINE B2 -1 194 3 1 1291 22 0 0 0 chr5 92544499 92544521 -59992738 + AT_rich Low_complexity Low_complexity 1 22 0 1 1291 1228 54 0 0 chr5 92544521 92544668 -59992591 - B1_Mm SINE Alu 0 147 1 1 1291 1454 67 17 0 chr5 92544734 92544914 -59992345 - B2_Mm2 SINE B2 -12 183 1 1 1291 184 191 42 21 chr5 92544945 92544993 -59992266 + MIRm SINE MIR 47 95 -181 1 1291 335 218 57 57 chr5 92545187 92545328 -59991931 + B4A SINE B4 2 142 -150 1 1291 198 103 0 0 chr5 92545334 92545363 -59991896 + (GGA)n Simple_repeat Simple_repeat 3 31 0 1 1291 705 247 0 17 chr5 92545374 92545551 -59991708 + B3 SINE B2 43 216 0 1 1291 1080 65 0 7 chr5 92545567 92545707 -59991552 + B1_Mus1 SINE Alu 1 139 -9 1 1291 216 86 0 0 chr5 92545707 92545742 -59991517 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1291 824 284 127 34 chr5 92546503 92546848 -59990411 + MTD LTR MaLR 11 361 -46 1 1291 419 198 12 0 chr5 92547226 92547307 -59989952 - 5S rRNA rRNA -26 95 14 1 1291 227 304 25 0 chr5 92548096 92548175 -59989084 + ID4 SINE ID 2 82 -1 1 1291 424 274 96 0 chr5 92548192 92548327 -59988932 + B1F SINE Alu 1 148 -1 1 1291 1117 92 39 39 chr5 92548501 92548681 -59988578 + B2_Mm2 SINE B2 2 181 -14 1 1291 1121 41 0 40 chr5 92549267 92549418 -59987841 + B1_Mm SINE Alu 2 146 -1 1 1291 382 277 156 0 chr5 92549474 92549615 -59987644 + B3A SINE B2 29 191 -7 1 1291 330 215 299 0 chr5 92549619 92549726 -59987533 + B1_Mur2 SINE Alu 1 139 -10 1 1291 1145 80 57 0 chr5 92549964 92550140 -59987119 - B2_Mm1t SINE B2 -1 192 7 1 1291 1317 90 17 11 chr5 92550341 92550521 -59986738 + B2_Mm2 SINE B2 1 181 -14 1 1291 336 219 27 0 chr5 92551111 92551184 -59986075 + PB1D9 SINE Alu 46 120 0 1 1291 731 141 40 58 chr5 92551243 92551256 -59986003 - B2_Mm2 SINE B2 -13 182 172 1 1291 1230 54 0 0 chr5 92551256 92551404 -59985855 + B1_Mus1 SINE Alu 1 148 0 1 1291 731 141 40 58 chr5 92551404 92551563 -59985696 - B2_Mm2 SINE B2 -24 171 13 1 1291 277 213 33 0 chr5 92551572 92551633 -59985626 - B1_Mur1 SINE Alu -38 111 49 1 1291 489 171 15 127 chr5 92551656 92551790 -59985469 - B1_Mur4 SINE Alu 0 150 32 1 1291 875 135 14 34 chr5 92551818 92551964 -59985295 - B1_Mus2 SINE Alu 0 147 5 1 1291 1001 184 45 5 chr5 92552039 92552241 -59985018 - B3 SINE B2 -5 211 2 1 1291 235 194 0 141 chr5 92552622 92552637 -59984622 + ID_B1 SINE B4 148 214 -10 1 1291 460 79 0 0 chr5 92552637 92552700 -59984559 + B1_Mur4 SINE Alu 78 140 -10 1 1291 342 116 14 55 chr5 92552938 92553011 -59984248 - B1_Mur4 SINE Alu -2 148 79 1 1291 315 71 0 0 chr5 92553038 92553080 -59984179 + (CCTG)n Simple_repeat Simple_repeat 2 43 0 1 1291 314 246 0 0 chr5 92553268 92553333 -59983926 + ID4 SINE ID 16 80 -3 1 1291 409 181 50 118 chr5 92553438 92553557 -59983702 + ID_B1 SINE B4 113 223 -1 1 1291 753 253 0 53 chr5 92553818 92554006 -59983253 - B3A SINE B2 -17 181 4 1 1291 1116 184 14 5 chr5 92554020 92554233 -59983026 - B3 SINE B2 0 216 2 1 1291 381 43 0 0 chr5 92554255 92554302 -59982957 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1291 180 0 0 0 chr5 92554352 92554372 -59982887 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1291 961 141 7 0 chr5 92554396 92554538 -59982721 + B1_Mur4 SINE Alu 2 144 -6 1 1291 562 300 99 7 chr5 92554558 92554830 -59982429 + L1MC4 LINE L1 7745 8041 -1 1 1291 1021 122 0 6 chr5 92554921 92555086 -59982173 - B2_Mm2 SINE B2 -1 194 31 1 1291 243 0 0 0 chr5 92555086 92555113 -59982146 + (TTA)n Simple_repeat Simple_repeat 3 29 0 1 1291 1166 64 0 0 chr5 92555115 92555255 -59982004 - B1_Mus2 SINE Alu -6 141 2 1 1291 24 0 0 0 chr5 92555622 92555646 -59981613 + AT_rich Low_complexity Low_complexity 1 24 0 1 1291 656 258 68 15 chr5 92555657 92555862 -59981397 - B3 SINE B2 0 216 1 1 1291 195 157 0 0 chr5 92556111 92556162 -59981097 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 1291 283 283 75 0 chr5 92557098 92557204 -59980055 - PB1D9 SINE Alu -6 114 1 1 1291 293 269 108 76 chr5 92557232 92557389 -59979870 - RSINE1 SINE B4 0 165 4 1 1291 1165 174 225 58 chr5 92557550 92557879 -59979380 - ORR1C2 LTR MaLR 0 384 1 1 1291 360 0 0 0 chr5 92558386 92558426 -59978833 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1291 28 0 0 0 chr5 92558909 92558937 -59978322 + AT_rich Low_complexity Low_complexity 1 28 0 1 1291 1215 121 0 26 chr5 92558944 92559139 -59978120 + B2_Mm2 SINE B2 2 191 -4 1 1291 1172 147 10 0 chr5 92559403 92559600 -59977659 + B3 SINE B2 7 205 -11 1 1291 530 232 15 36 chr5 92559655 92559792 -59977467 + RSINE1 SINE B4 1 134 -31 2 1291 696 247 0 30 chr5 92559896 92560063 -59977196 + ID_B1 SINE B4 58 219 -5 2 1291 266 252 43 43 chr5 92559944 92560085 -59977174 - YREP_Mm Unknown Unknown -1516 296 156 2 1291 214 286 42 14 chr5 92560139 92560210 -59977049 + ID4_ SINE ID 8 80 -3 2 1291 224 218 53 35 chr5 92560414 92560471 -59976788 - PB1D10 SINE Alu 0 117 60 2 1291 545 224 0 0 chr5 92560420 92560536 -59976723 - ID_B1 SINE B4 -4 220 105 2 1291 435 305 92 44 chr5 92560539 92560745 -59976514 + MTEa LTR MaLR 1 216 -163 2 1291 1023 193 29 29 chr5 92560756 92560964 -59976295 - B3 SINE B2 -7 209 2 2 1291 27 29 0 0 chr5 92561132 92561166 -59976093 + AT_rich Low_complexity Low_complexity 1 34 0 2 1291 369 0 0 0 chr5 92561232 92561273 -59975986 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1291 560 211 131 42 chr5 92561273 92561441 -59975818 + B3 SINE B2 33 215 -1 2 1291 23 0 0 0 chr5 92561444 92561467 -59975792 + AT_rich Low_complexity Low_complexity 1 23 0 2 1291 1199 49 7 0 chr5 92561482 92561625 -59975634 + B1_Mus2 SINE Alu 1 144 -3 2 1291 201 74 0 0 chr5 92561625 92561652 -59975607 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1291 260 319 8 40 chr5 92561766 92561890 -59975369 - L2a LINE L2 -35 3391 3272 2 1291 2245 83 42 60 chr5 92561943 92562276 -59974983 - ORR1A2 LTR MaLR 0 327 1 2 1291 1366 72 72 0 chr5 92562824 92563005 -59974254 + B2_Mm2 SINE B2 2 195 0 2 1291 202 222 0 0 chr5 92563046 92563082 -59974177 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 2 1291 314 230 201 35 chr5 92563195 92563339 -59973920 - ID_B1 SINE B4 -46 178 11 2 1291 1162 155 21 76 chr5 92563646 92563883 -59973376 + URR1A DNA MER1_type 3 226 0 2 1291 1310 109 22 0 chr5 92563945 92564129 -59973130 - B2_Mm2 SINE B2 -6 189 2 2 1291 237 239 0 15 chr5 92564747 92564815 -59972444 + CT-rich Low_complexity Low_complexity 1 67 0 2 1291 313 305 151 12 chr5 92565676 92565842 -59971417 - L2 LINE L2 -527 2892 2704 2 1291 228 297 0 26 chr5 92568212 92568288 -59968971 - tRNA-Ala-GCA tRNA tRNA -1 74 1 2 1291 232 246 0 32 chr5 92568227 92568290 -59968969 - ID4_ SINE ID -17 66 6 2 1291 240 35 0 0 chr5 92569252 92569281 -59967978 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1291 206 153 93 12 chr5 92570238 92570324 -59966935 + (TA)n Simple_repeat Simple_repeat 2 94 0 2 1291 312 125 0 0 chr5 92570475 92570539 -59966720 + (T)n Simple_repeat Simple_repeat 1 64 0 2 1291 1086 75 0 76 chr5 92570539 92570697 -59966562 - B1_Mus2 SINE Alu 0 147 2 2 1291 342 296 42 34 chr5 92571660 92571779 -59965480 + RSINE1 SINE B4 29 148 -17 2 1291 502 185 55 18 chr5 92572490 92572600 -59964659 - PB1D10 SINE Alu -1 116 3 2 1291 354 247 32 21 chr5 92572849 92572944 -59964315 - RSINE1 SINE B4 -67 98 3 2 1291 837 188 117 20 chr5 92572974 92573170 -59964089 - B3 SINE B2 -1 215 1 2 1291 279 101 58 0 chr5 92573676 92573745 -59963514 + T-rich Low_complexity Low_complexity 3 75 0 2 1291 1230 41 0 0 chr5 92573745 92573891 -59963368 - B1_Mm SINE Alu 0 147 2 2 1291 27 29 0 0 chr5 92573902 92573936 -59963323 + AT_rich Low_complexity Low_complexity 1 34 0 2 1291 664 254 17 28 chr5 92573944 92574122 -59963137 - B3 SINE B2 -25 191 16 2 1291 339 267 11 22 chr5 92574309 92574401 -59962858 - RSINE1 SINE B4 -64 101 11 2 1291 330 259 12 12 chr5 92574675 92574757 -59962502 - PB1D10 SINE Alu -30 87 6 2 1291 843 182 0 0 chr5 92575277 92575420 -59961839 - B1_Mur4 SINE Alu -7 143 1 2 1291 2212 150 42 2 chr5 92575501 92575901 -59961358 - MTC LTR MaLR -5 416 1 2 1291 391 247 181 32 chr5 92576085 92576273 -59960986 + B3 SINE B2 1 216 0 2 1291 22 0 0 0 chr5 92576279 92576301 -59960958 + AT_rich Low_complexity Low_complexity 1 22 0 2 1291 548 270 70 38 chr5 92576333 92576491 -59960768 + RSINE1 SINE B4 3 165 0 2 1291 228 294 141 0 chr5 92576565 92576657 -59960602 - Charlie8 DNA MER1_type -2282 146 42 2 1291 508 294 171 3 chr5 92576925 92577218 -59960041 - MER82 DNA MER2_type -157 496 155 2 1291 571 212 18 0 chr5 92577254 92577367 -59959892 - PB1D9 SINE Alu -5 115 1 2 1291 257 200 45 15 chr5 92577368 92577434 -59959825 - MER82 DNA MER2_type -490 163 96 2 1291 1236 104 49 5 chr5 92577859 92578043 -59959216 + B2_Mm2 SINE B2 1 192 -3 2 1291 225 178 0 0 chr5 92578046 92578091 -59959168 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1291 419 254 53 0 chr5 92579024 92579138 -59958121 - ID_B1 SINE B4 -15 209 90 2 1291 555 210 34 0 chr5 92579883 92580002 -59957257 - B1_Mur2 SINE Alu -18 131 9 2 1291 290 309 11 0 chr5 92579922 92580016 -59957243 - B4 SINE B4 -119 173 79 2 1291 411 364 6 58 chr5 92580313 92580485 -59956774 + RSINE1 SINE B4 3 165 0 2 1291 832 199 72 0 chr5 92580803 92580984 -59956275 + B3 SINE B2 1 194 -22 2 1291 1379 83 6 6 chr5 92581160 92581341 -59955918 - B2_Mm2 SINE B2 -14 181 1 2 1291 947 200 89 0 chr5 92581592 92581782 -59955477 - B3 SINE B2 -7 209 3 2 1291 586 176 19 0 chr5 92582217 92582325 -59954934 - B1_Mur3 SINE Alu -1 148 39 2 1291 291 229 70 40 chr5 92582259 92582359 -59954900 - MT2B LTR ERVL -344 257 155 2 1291 290 311 0 0 chr5 92582328 92582402 -59954857 + ID_B1 SINE B4 151 224 0 2 1291 1355 93 5 11 chr5 92582434 92582619 -59954640 + B2_Mm1a SINE B2 2 185 -8 2 1291 260 283 97 32 chr5 92583439 92583684 -59953575 - MLT1F1 LTR MaLR -269 300 2 2 1291 837 124 16 0 chr5 92583806 92583935 -59953324 - B1_Mur3 SINE Alu -6 143 13 2 1291 465 294 76 5 chr5 92584125 92584310 -59952949 + MLT1D LTR MaLR 5 202 -303 2 1291 872 121 7 0 chr5 92584435 92584576 -59952683 + (TTCC)n Simple_repeat Simple_repeat 4 145 0 2 1291 1098 99 45 23 chr5 92584629 92584805 -59952454 - B2_Mm2 SINE B2 -14 181 2 2 1291 484 66 0 38 chr5 92584805 92584884 -59952375 + (TCCCC)n Simple_repeat Simple_repeat 5 80 0 2 1291 216 75 75 0 chr5 92584906 92584946 -59952313 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 2 1291 549 127 116 0 chr5 92584947 92585068 -59952191 - B1_Mus2 SINE Alu 0 148 1 2 1291 341 278 192 31 chr5 92585068 92585261 -59951998 - L1M4 LINE L1 -1677 4469 4246 2 1291 712 249 23 109 chr5 92585289 92585355 -59951904 - Lx6 LINE L1 -169 7291 7234 2 1291 1427 83 16 0 chr5 92585355 92585547 -59951712 + B2_Mm2 SINE B2 1 195 0 2 1291 712 249 23 109 chr5 92585547 92585737 -59951522 - Lx6 LINE L1 -227 7233 7057 2 1291 279 274 12 12 chr5 92585790 92585875 -59951384 - B4A SINE B4 -207 85 1 2 1291 1185 85 68 0 chr5 92586028 92586205 -59951054 - B2_Mm2 SINE B2 -6 189 1 2 1291 207 139 0 0 chr5 92586630 92586666 -59950593 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 2 1291 485 257 144 27 chr5 92586702 92586890 -59950369 - B3 SINE B2 -6 210 1 2 1291 240 227 0 29 chr5 92587103 92587171 -59950088 + GA-rich Low_complexity Low_complexity 3 68 0 2 1291 372 254 100 0 chr5 92587171 92587281 -59949978 - B1F SINE Alu -17 132 12 2 1291 521 224 97 0 chr5 92587991 92588125 -59949134 - B1_Mur2 SINE Alu 0 149 3 2 1291 621 161 20 0 chr5 92589078 92589197 -59948062 - B1_Mus1 SINE Alu -6 143 21 2 1291 227 54 27 0 chr5 92589302 92589339 -59947920 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 2 1291 1183 22 0 0 chr5 92589339 92589473 -59947786 - B1_Mus2 SINE Alu -13 134 1 2 1291 338 235 164 9 chr5 92589495 92589611 -59947648 - B1F SINE Alu -2 147 14 2 1291 213 323 115 23 chr5 92589500 92589630 -59947629 - ID_B1 SINE B4 -7 217 76 2 1291 1398 87 16 0 chr5 92589662 92589846 -59947413 - B2_Mm2 SINE B2 -8 187 1 2 1291 828 41 82 8 chr5 92590181 92590303 -59946956 - B1_Mus1 SINE Alu 0 148 18 2 1291 353 323 0 0 chr5 92590893 92590986 -59946273 - B1F2 SINE Alu -56 93 1 2 1291 235 222 0 16 chr5 92591174 92591238 -59946021 + (TATG)n Simple_repeat Simple_repeat 3 65 0 2 1291 603 191 81 0 chr5 92591463 92591599 -59945660 - B1_Mm SINE Alu 0 147 1 2 1291 1220 183 14 5 chr5 92591751 92591965 -59945294 + B3 SINE B2 1 216 0 2 1291 1434 225 47 27 chr5 92592028 92592233 -59945026 + MTD LTR MaLR 6 211 -208 2 1291 1136 55 0 40 chr5 92592233 92592385 -59944874 + B1_Mus2 SINE Alu 2 147 0 2 1291 1434 225 47 27 chr5 92592385 92592585 -59944674 + MTD LTR MaLR 212 419 0 2 1291 211 220 0 0 chr5 92592759 92592809 -59944450 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1291 1402 75 21 0 chr5 92593026 92593214 -59944045 + B2_Mm2 SINE B2 1 192 -3 2 1291 514 227 329 13 chr5 92593218 92593370 -59943889 + B3 SINE B2 1 200 -16 2 1291 845 210 103 0 chr5 92593460 92593655 -59943604 - B3 SINE B2 0 216 2 2 1291 809 226 133 25 chr5 92593780 92594021 -59943238 - MTD LTR MaLR -15 404 138 2 1291 1010 222 69 135 chr5 92594010 92594431 -59942828 - MTC-int LTR MaLR -623 635 243 2 1291 563 269 6 42 chr5 92594446 92594613 -59942646 - B3 SINE B2 -2 214 54 2 1291 426 264 142 78 chr5 92594596 92594814 -59942445 - MTC-int LTR MaLR -1025 233 2 2 1291 259 208 0 5 chr5 92594842 92594906 -59942353 - B1F1 SINE Alu -76 73 12 2 1291 255 284 0 24 chr5 92595189 92595272 -59941987 + ID4 SINE ID 3 83 0 2 1291 750 211 112 15 chr5 92596928 92597125 -59940134 + B3 SINE B2 1 216 0 3 1291 1208 35 14 0 chr5 92597125 92597269 -59939990 + B1_Mus2 SINE Alu 1 147 0 3 1291 25 0 0 0 chr5 92597372 92597397 -59939862 + AT_rich Low_complexity Low_complexity 1 25 0 3 1291 425 230 10 10 chr5 92597855 92597956 -59939303 + B1F2 SINE Alu 3 103 -46 3 1291 265 294 71 0 chr5 92597982 92598067 -59939192 - MIR SINE MIR -102 160 70 3 1291 976 189 20 0 chr5 92598464 92598660 -59938599 + B3 SINE B2 2 201 -15 3 1291 228 67 0 0 chr5 92598774 92598804 -59938455 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1291 228 260 38 38 chr5 92600635 92600715 -59936544 - PB1D10 SINE Alu -24 93 14 3 1291 553 138 208 16 chr5 92600858 92600983 -59936276 + B1_Mur3 SINE Alu 1 149 0 3 1291 1187 278 200 16 chr5 92601084 92602085 -59935174 + L1MC3 LINE L1 5079 6255 -89 3 1291 493 257 26 0 chr5 92602157 92602270 -59934989 - RSINE1 SINE B4 -33 132 17 3 1291 327 239 81 18 chr5 92603569 92603680 -59933579 - Lx8 LINE L1 -1555 5918 5801 3 1291 355 258 111 16 chr5 92603704 92603830 -59933429 - B3 SINE B2 0 216 79 3 1291 753 259 12 0 chr5 92603991 92604153 -59933106 + B3A SINE B2 1 164 -34 3 1291 379 206 10 30 chr5 92604210 92604310 -59932949 + BC1_Mm scRNA scRNA 1 98 -54 3 1291 420 20 0 0 chr5 92604382 92604431 -59932828 + (GA)n Simple_repeat Simple_repeat 1 49 0 3 1291 1560 53 16 0 chr5 92604614 92604804 -59932455 - B2_Mm2 SINE B2 -2 193 1 3 1291 896 105 8 0 chr5 92604838 92604971 -59932288 + B2_Mm1t SINE B2 46 179 -14 3 1291 324 74 302 9 chr5 92604982 92605088 -59932171 + B2_Mm2 SINE B2 46 188 -7 3 1291 214 191 85 0 chr5 92605488 92605535 -59931724 - B1_Mus2 SINE Alu -91 56 6 3 1291 253 256 26 0 chr5 92606342 92606353 -59930906 - PB1D10 SINE Alu -33 84 5 3 1291 279 194 15 0 chr5 92606353 92606420 -59930839 - ID_B1 SINE B4 -71 153 86 3 1291 286 183 0 0 chr5 92606839 92606899 -59930360 - Lx9 LINE L1 -4 7640 7581 3 1291 1422 78 5 5 chr5 92606915 92607108 -59930151 - B2_Mm1a SINE B2 0 193 1 3 1291 944 161 40 75 chr5 92607173 92607374 -59929885 + B2_Mm2 SINE B2 1 194 -1 3 1291 208 114 21 64 chr5 92607552 92607570 -59929689 + T-rich Low_complexity Low_complexity 30 47 0 3 1291 871 113 41 34 chr5 92607570 92607716 -59929543 - B1_Mus2 SINE Alu 0 147 1 3 1291 208 114 21 64 chr5 92607716 92607744 -59929515 + T-rich Low_complexity Low_complexity 3 29 0 3 1291 360 0 0 0 chr5 92607747 92607787 -59929472 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 3 1291 979 82 75 0 chr5 92607788 92607935 -59929324 - B2_Mm2 SINE B2 -37 158 1 3 1291 331 255 151 34 chr5 92608098 92608244 -59929015 + RSINE1 SINE B4 3 165 0 3 1291 391 256 1 1 chr5 92608494 92608587 -59928672 - B1F SINE Alu -56 94 1 3 1291 245 302 0 85 chr5 92608504 92608598 -59928661 - ID_B1 SINE B4 -63 161 76 3 1291 371 293 183 33 chr5 92608785 92609205 -59928054 - HAL1 LINE L1 -616 1891 1409 3 1291 797 163 13 26 chr5 92609308 92609459 -59927800 + B1_Mur4 SINE Alu 1 149 -1 3 1291 1217 56 56 0 chr5 92609744 92609924 -59927335 - B2_Mm2 SINE B2 0 195 6 3 1291 1603 46 0 10 chr5 92609953 92610150 -59927109 - B2_Mm2 SINE B2 0 195 1 3 1291 388 183 28 14 chr5 92613285 92613357 -59923902 - ID4 SINE ID -9 74 2 3 1291 570 217 0 16 chr5 92613578 92613700 -59923559 - ID_B1 SINE B4 0 224 105 3 1291 480 263 51 7 chr5 92613579 92613717 -59923542 - B1F SINE Alu 0 149 6 3 1291 580 227 30 0 chr5 92613908 92614040 -59923219 + B1F2 SINE Alu 3 138 -11 3 1291 595 280 68 54 chr5 92614064 92614343 -59922916 + B4A SINE B4 2 284 -8 3 1291 256 86 0 0 chr5 92614655 92614690 -59922569 - B3A SINE B2 -162 36 2 3 1291 225 132 0 0 chr5 92614869 92614907 -59922352 + (CAT)n Simple_repeat Simple_repeat 2 39 0 3 1291 502 306 35 0 chr5 92614951 92615095 -59922164 - RSINE1 SINE B4 -15 150 2 3 1291 1281 89 39 11 chr5 92615421 92615603 -59921656 - B2_Mm2 SINE B2 -8 187 1 3 1291 1016 249 0 0 chr5 92615781 92616002 -59921257 - ID_B1 SINE B4 -2 222 2 3 1291 462 219 0 0 chr5 92616515 92616620 -59920639 + (TA)n Simple_repeat Simple_repeat 1 105 0 3 1291 477 0 0 0 chr5 92617187 92617240 -59920019 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1291 1461 201 133 25 chr5 92617505 92618214 -59919045 + RMER6C LTR ERVK 1 716 -4 3 1291 910 177 25 65 chr5 92618956 92619155 -59918104 - B2_Mm2 SINE B2 -3 192 2 3 1291 1336 85 11 0 chr5 92619341 92619517 -59917742 + B2_Mm1t SINE B2 2 179 -14 3 1291 380 106 346 28 chr5 92619583 92619690 -59917569 + B2_Mm2 SINE B2 47 187 -8 3 1291 397 103 0 0 chr5 92620609 92620667 -59916592 + B1_Mus2 SINE Alu 2 59 -88 3 1291 351 290 81 17 chr5 92620782 92620954 -59916305 + B4A SINE B4 46 228 -64 3 1291 26 0 0 0 chr5 92621168 92621194 -59916065 + AT_rich Low_complexity Low_complexity 1 26 0 3 1291 249 325 48 12 chr5 92621196 92621280 -59915979 - B3A SINE B2 0 198 112 3 1291 1180 72 74 53 chr5 92623287 92623477 -59913782 - B2_Mm2 SINE B2 0 195 2 3 1291 468 198 0 49 chr5 92623479 92623602 -59913657 - B1_Mur1 SINE Alu -1 148 10 3 1291 216 243 160 13 chr5 92623669 92623744 -59913515 - ID_B1 SINE B4 -63 161 76 3 1291 381 248 0 82 chr5 92623731 92623841 -59913418 - B1_Mur4 SINE Alu -35 115 15 3 1291 244 250 17 0 chr5 92623850 92623910 -59913349 - B1F1 SINE Alu -4 145 85 3 1291 347 263 34 42 chr5 92624048 92624167 -59913092 - RSINE1 SINE B4 -5 160 43 3 1291 354 261 181 29 chr5 92624659 92624797 -59912462 - RSINE1 SINE B4 -4 161 3 3 1291 843 138 0 0 chr5 92625016 92625154 -59912105 + (TTTC)n Simple_repeat Simple_repeat 4 141 0 3 1291 1121 69 0 40 chr5 92625157 92625308 -59911951 - B1_Mus1 SINE Alu -3 145 1 3 1291 856 196 0 0 chr5 92625368 92625516 -59911743 - B1_Mur2 SINE Alu 0 149 2 3 1291 2921 146 20 6 chr5 92625600 92626109 -59911150 - RMER20A LTR ERVK 0 516 1 3 1291 915 201 128 24 chr5 92626116 92626366 -59910893 + B4A SINE B4 1 276 -16 3 1291 603 84 0 0 chr5 92627048 92627143 -59910116 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 3 1291 407 303 141 0 chr5 92627824 92628009 -59909250 - MLT1-int LTR MaLR -711 660 450 3 1291 240 348 92 22 chr5 92628241 92628426 -59908833 - MLT1-int LTR MaLR -1133 238 41 3 1291 781 190 80 0 chr5 92629070 92629207 -59908052 - B1_Mur3 SINE Alu 0 149 2 3 1291 1109 199 164 9 chr5 92631918 92632102 -59905157 - ORR1C2 LTR MaLR -5 379 185 3 1291 543 16 0 0 chr5 92632102 92632166 -59905093 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1291 1109 199 164 9 chr5 92632166 92632305 -59904954 - ORR1C2 LTR MaLR -200 184 8 3 1291 342 0 0 0 chr5 92632456 92632494 -59904765 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 3 1291 864 57 184 8 chr5 92632494 92632610 -59904649 - B1_Mus1 SINE Alu -9 139 1 3 1291 875 180 0 0 chr5 92632684 92632845 -59904414 + ORR1C1 LTR MaLR 218 378 0 3 1291 197 203 237 0 chr5 92632903 92632962 -59904297 - L2a LINE L2 -51 3375 3303 3 1291 187 298 89 73 chr5 92633085 92633208 -59904051 - L2 LINE L2 -629 2790 2666 3 1291 625 238 161 0 chr5 92633800 92633968 -59903291 + B3 SINE B2 3 197 -19 3 1291 591 85 0 0 chr5 92635111 92635193 -59902066 + (TG)n Simple_repeat Simple_repeat 2 83 0 3 1291 1050 173 26 31 chr5 92635699 92635926 -59901333 + URR1A DNA MER1_type 1 226 0 3 1291 1636 164 34 14 chr5 92636455 92636746 -59900513 - MTB_Mm LTR MaLR -63 344 48 3 1291 380 110 313 52 chr5 92636715 92636830 -59900429 - B2_Mm2 SINE B2 -4 191 47 3 1291 978 73 7 0 chr5 92636853 92636989 -59900270 - B2_Mm1t SINE B2 -56 137 1 3 1291 574 156 0 0 chr5 92636989 92637085 -59900174 - MTC LTR MaLR -323 98 3 3 1291 411 243 155 22 chr5 92637089 92637134 -59900125 - MTC-int LTR MaLR -258 1000 943 3 1291 249 0 48 24 chr5 92637134 92637176 -59900083 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 3 1291 411 243 155 22 chr5 92637176 92637311 -59899948 - MTC-int LTR MaLR -316 942 797 3 1291 1088 103 0 6 chr5 92637826 92637992 -59899267 + (GAAA)n Simple_repeat Simple_repeat 4 168 0 3 1291 21 0 0 0 chr5 92638072 92638093 -59899166 + AT_rich Low_complexity Low_complexity 1 21 0 3 1291 753 195 137 64 chr5 92638103 92638281 -59898978 - MTD LTR MaLR -21 398 206 3 1291 414 0 0 0 chr5 92638281 92638327 -59898932 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 1291 1185 36 0 0 chr5 92638327 92638465 -59898794 - B1_Mus2 SINE Alu -9 138 1 3 1291 753 204 113 113 chr5 92638465 92638652 -59898607 - MTD LTR MaLR -214 205 47 3 1291 507 209 292 30 chr5 92638653 92638821 -59898438 + B3 SINE B2 3 214 -2 3 1291 637 231 15 0 chr5 92639613 92639747 -59897512 - B3A SINE B2 -58 140 5 3 1291 1101 101 0 0 chr5 92640235 92640384 -59896875 - B1_Mur4 SINE Alu -1 149 1 3 1291 432 263 46 35 chr5 92641381 92641554 -59895705 + MER5B DNA MER1_type 4 178 0 3 1291 1203 41 0 7 chr5 92642036 92642183 -59895076 + B1_Mus1 SINE Alu 3 148 0 3 1291 978 223 15 0 chr5 92642228 92642430 -59894829 + B3 SINE B2 2 206 -10 3 1291 491 240 0 55 chr5 92642645 92642773 -59894486 + RSINE1 SINE B4 43 163 -2 3 1291 379 167 40 48 chr5 92642774 92643028 -59894231 + (CA)n Simple_repeat Simple_repeat 1 251 0 4 1291 472 182 22 22 chr5 92643050 92643230 -59894029 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1291 648 209 120 33 chr5 92643587 92643770 -59893489 + Lx6 LINE L1 7257 7455 -5 4 1291 851 225 29 35 chr5 92643785 92644005 -59893254 + B3 SINE B2 1 215 -1 4 1291 22 35 0 0 chr5 92644138 92644167 -59893092 + AT_rich Low_complexity Low_complexity 1 29 0 4 1291 225 0 0 0 chr5 92644410 92644435 -59892824 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1291 1663 42 0 0 chr5 92645245 92645437 -59891822 + B2_Mm1a SINE B2 2 193 0 4 1291 306 254 114 97 chr5 92645963 92646365 -59890894 - RMER10A LTR ERVL -13 429 21 4 1291 225 0 0 0 chr5 92646398 92646423 -59890836 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 4 1291 334 235 28 12 chr5 92646423 92646526 -59890733 - B1_Mur1 SINE Alu -13 136 1 4 1291 417 66 0 0 chr5 92646735 92646796 -59890463 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1291 320 295 0 0 chr5 92646799 92646877 -59890382 - B3A SINE B2 -31 167 90 4 1291 594 292 102 16 chr5 92646879 92647133 -59890126 + L1MB7 LINE L1 5764 6039 -145 4 1291 198 0 0 0 chr5 92647145 92647167 -59890092 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1291 256 138 16 44 chr5 92647171 92647239 -59890020 - B3 SINE B2 -95 121 53 4 1291 1185 108 17 6 chr5 92647292 92647469 -59889790 - B2_Mm1t SINE B2 -14 179 1 4 1291 573 252 0 8 chr5 92647724 92647848 -59889411 + ID_B1 SINE B4 82 204 -20 4 1291 261 192 89 13 chr5 92647900 92647979 -59889280 + B1F SINE Alu 65 149 0 4 1291 522 120 100 18 chr5 92648328 92648438 -59888821 + B2_Mm2 SINE B2 77 195 0 4 1291 238 284 9 56 chr5 92648795 92648903 -59888356 - L1MB3 LINE L1 -48 6135 6033 4 1291 348 133 0 0 chr5 92649841 92649901 -59887358 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1291 1256 27 0 7 chr5 92650120 92650268 -59886991 - B1_Mus1 SINE Alu 0 148 2 4 1291 627 253 77 25 chr5 92650404 92650639 -59886620 - MER57F LTR ERV1 -189 247 1 4 1291 2684 107 25 63 chr5 92650722 92651169 -59886090 - RLTR23 LTR ERV1 0 430 1 4 1291 1199 61 0 7 chr5 92651368 92651516 -59885743 - B1_Mus1 SINE Alu 0 148 2 4 1291 485 259 35 7 chr5 92651547 92651691 -59885568 - B1F SINE Alu 0 149 2 4 1291 1197 37 6 35 chr5 92651898 92652249 -59885010 + (GAA)n Simple_repeat Simple_repeat 1 340 0 4 1291 393 90 0 63 chr5 92652260 92652355 -59884904 + GA-rich Low_complexity Low_complexity 1 89 0 4 1291 1635 156 43 3 chr5 92652529 92652877 -59884382 - RLTR31_Mm LTR ERVK -199 362 1 4 1291 776 213 40 6 chr5 92652899 92653074 -59884185 - MTC LTR MaLR -55 366 186 4 1291 481 272 51 26 chr5 92653076 92653193 -59884066 + ETnERV2-int LTR ERVK 7083 7202 -204 4 1291 429 141 0 37 chr5 92653582 92653663 -59883596 - MTC LTR MaLR -215 204 127 4 1291 289 260 62 0 chr5 92653721 92653817 -59883442 - PB1D9 SINE Alu -10 110 9 4 1291 274 375 0 0 chr5 92654375 92654455 -59882804 + ID_B1 SINE B4 116 195 -29 4 1291 702 113 38 25 chr5 92654465 92654704 -59882555 + (TG)n Simple_repeat Simple_repeat 1 242 0 4 1291 430 247 256 29 chr5 92654706 92654740 -59882519 - B4A SINE B4 0 292 261 4 1291 260 53 26 0 chr5 92654740 92654778 -59882481 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1291 430 247 256 29 chr5 92654778 92654981 -59882278 - B4A SINE B4 -32 260 1 4 1291 253 309 123 8 chr5 92655030 92655291 -59881968 + L1M5 LINE L1 5595 5885 -239 4 1291 182 156 22 0 chr5 92655408 92655453 -59881806 + A-rich Low_complexity Low_complexity 1 46 0 4 1291 702 78 0 0 chr5 92655572 92655674 -59881585 + (CA)n Simple_repeat Simple_repeat 1 102 0 4 1291 1152 91 97 0 chr5 92655701 92655877 -59881382 - B2_Mm2 SINE B2 -1 194 2 4 1291 1524 56 0 39 chr5 92656681 92656884 -59880375 + B2_Mm2 SINE B2 1 195 0 4 1291 334 254 88 116 chr5 92657165 92657312 -59879947 - RSINE1 SINE B4 -19 146 4 4 1291 916 139 0 0 chr5 92657367 92657504 -59879755 + B1_Mur3 SINE Alu 1 137 -12 4 1291 189 0 0 0 chr5 92657504 92657525 -59879734 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 4 1291 240 155 79 66 chr5 92657784 92657860 -59879399 + RMER10B LTR ERVL 235 311 -87 4 1291 1215 68 0 0 chr5 92658362 92658510 -59878749 + B1_Mus1 SINE Alu 1 148 0 4 1291 515 229 167 38 chr5 92658599 92658785 -59878474 + MER2 DNA MER2_type 79 288 -57 4 1291 210 303 69 20 chr5 92659215 92659316 -59877943 + MIRb SINE MIR 157 262 -6 4 1291 273 193 145 0 chr5 92659752 92659835 -59877424 - MER53 DNA hAT 0 193 99 4 1291 470 224 17 22 chr5 92659944 92660122 -59877137 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 4 1291 217 278 0 0 chr5 92660123 92660177 -59877082 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1291 362 241 51 0 chr5 92660193 92660272 -59876987 + ID4_ SINE ID 1 83 0 4 1291 444 37 0 0 chr5 92660328 92660382 -59876877 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1291 423 246 101 29 chr5 92661604 92661742 -59875517 + B1F2 SINE Alu 2 149 0 4 1291 479 221 72 24 chr5 92661618 92661743 -59875516 + ID_B1 SINE B4 93 223 -1 4 1291 414 0 0 0 chr5 92662016 92662062 -59875197 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1291 489 224 8 60 chr5 92662552 92662685 -59874574 + ID_B1 SINE B4 85 210 -14 4 1291 483 187 29 23 chr5 92662696 92662871 -59874388 + GA-rich Low_complexity Low_complexity 1 176 0 4 1291 562 200 148 0 chr5 92662894 92663009 -59874250 + B1_Mur1 SINE Alu 13 144 -5 4 1291 336 48 0 0 chr5 92663453 92663495 -59873764 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 4 1291 233 258 20 70 chr5 92663528 92663628 -59873631 - PB1D7 SINE Alu -6 114 20 4 1291 742 251 44 16 chr5 92663540 92663722 -59873537 - B4A SINE B4 -101 191 5 4 1291 387 0 0 0 chr5 92663762 92663805 -59873454 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 4 1291 708 127 8 45 chr5 92663805 92663937 -59873322 - B1_Mur4 SINE Alu -11 139 13 4 1291 230 295 61 122 chr5 92663937 92663952 -59873307 - B4A SINE B4 -76 216 79 4 1291 386 270 20 10 chr5 92664463 92664564 -59872695 + B3A SINE B2 81 182 -16 4 1291 354 173 0 0 chr5 92664564 92664639 -59872620 + (CA)n Simple_repeat Simple_repeat 1 75 0 4 1291 795 207 107 20 chr5 92665129 92665326 -59871933 - B3 SINE B2 0 216 3 4 1291 420 135 11 53 chr5 92665425 92665519 -59871740 - PB1D10 SINE Alu -1 116 27 4 1291 364 198 29 68 chr5 92665529 92665632 -59871627 - PB1D10 SINE Alu -2 115 17 4 1291 1301 68 6 0 chr5 92666104 92666281 -59870978 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 4 1291 219 36 0 0 chr5 92666283 92666311 -59870948 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1291 231 267 144 0 chr5 92666313 92666403 -59870856 - LTR48 LTR ERV1 -633 154 52 4 1291 256 225 144 11 chr5 92666441 92666531 -59870728 - MTD LTR MaLR 0 419 318 4 1291 1842 236 12 2 chr5 92666957 92667370 -59869889 + MTC LTR MaLR 1 417 -4 4 1292 219 114 0 0 chr5 92668180 92668215 -59869044 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 1292 393 304 68 19 chr5 92668513 92668674 -59868585 + Tigger7 DNA MER2_type 179 347 -2144 4 1292 1650 42 0 0 chr5 92669464 92669656 -59867603 - B2_Mm1a SINE B2 0 193 2 4 1292 733 171 46 8 chr5 92670330 92670460 -59866799 + B1_Mus2 SINE Alu 1 135 -12 4 1292 207 0 0 0 chr5 92670463 92670486 -59866773 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1292 769 195 19 13 chr5 92670498 92670654 -59866605 + B3A SINE B2 1 157 -41 4 1292 531 235 51 17 chr5 92670730 92670847 -59866412 + ID_B1 SINE B4 79 199 -25 4 1292 315 189 146 10 chr5 92670862 92670958 -59866301 + L1MCa LINE L1 1887 1995 -4513 4 1292 347 267 149 52 chr5 92671027 92671181 -59866078 + MLT1J-int LTR MaLR 1128 1296 -91 4 1292 369 0 0 0 chr5 92671285 92671326 -59865933 + (TC)n Simple_repeat Simple_repeat 1 41 0 4 1292 700 295 70 39 chr5 92671332 92671561 -59865698 + MLT1J LTR MaLR 73 308 -204 4 1292 378 297 90 21 chr5 92671696 92671885 -59865374 - MIRb SINE MIR -46 222 21 4 1292 3133 49 30 51 chr5 92672675 92673107 -59864152 + RLTR10C LTR ERVK 1 423 -13 4 1292 1099 146 28 0 chr5 92673219 92673397 -59863862 + B2_Mm2 SINE B2 1 183 -12 4 1292 475 211 48 24 chr5 92673410 92673536 -59863723 - MER117 DNA MER1_type 0 197 69 4 1292 22 35 0 0 chr5 92674193 92674222 -59863037 + AT_rich Low_complexity Low_complexity 1 29 0 4 1292 304 203 51 0 chr5 92674268 92674327 -59862932 - ID4_ SINE ID -20 63 2 4 1292 687 230 12 45 chr5 92674945 92675103 -59862156 + ID_B1 SINE B4 84 232 -60 4 1292 1000 187 54 29 chr5 92675437 92675641 -59861618 + B3 SINE B2 6 214 -2 4 1292 22 0 0 0 chr5 92675761 92675783 -59861476 + AT_rich Low_complexity Low_complexity 1 22 0 4 1292 207 0 0 0 chr5 92675980 92676003 -59861256 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4 1292 372 22 0 0 chr5 92676459 92676504 -59860755 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1292 269 51 0 25 chr5 92676504 92676544 -59860715 + (TTG)n Simple_repeat Simple_repeat 3 41 0 4 1292 658 264 0 14 chr5 92677404 92677546 -59859713 - B1_Mur2 SINE Alu 0 149 10 4 1292 239 322 46 79 chr5 92677600 92677816 -59859443 + L2a LINE L2 2935 3143 -283 4 1292 748 246 0 16 chr5 92678519 92678701 -59858558 + B3A SINE B2 1 179 -19 4 1292 360 0 0 0 chr5 92679702 92679742 -59857517 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1292 207 0 0 0 chr5 92679992 92680015 -59857244 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1292 1433 62 0 6 chr5 92680017 92680195 -59857064 - B2_Mm2 SINE B2 -16 179 3 5 1292 1795 137 117 90 chr5 92680195 92680597 -59856662 + MTC LTR MaLR 1 413 -8 5 1292 826 123 73 8 chr5 92680632 92680755 -59856504 + B1_Mur2 SINE Alu 5 135 -14 5 1292 28 29 0 0 chr5 92680755 92680790 -59856469 + AT_rich Low_complexity Low_complexity 1 35 0 5 1292 325 302 119 0 chr5 92681011 92681137 -59856122 + B1F2 SINE Alu 3 143 -6 5 1292 878 184 10 31 chr5 92681147 92681343 -59855916 + B2_Mm2 SINE B2 1 192 -3 5 1292 910 176 103 25 chr5 92681402 92681457 -59855802 + URR1B DNA MER1_type 6 62 -163 5 1292 1449 64 11 0 chr5 92681457 92681644 -59855615 + B2_Mm1t SINE B2 1 189 -4 5 1292 910 176 103 25 chr5 92681644 92681792 -59855467 + URR1B DNA MER1_type 63 224 -1 5 1292 309 305 12 0 chr5 92682570 92682652 -59854607 - ID4 SINE ID 0 83 1 5 1292 714 255 74 33 chr5 92682652 92682867 -59854392 - ID_B1 SINE B4 0 224 1 5 1292 406 272 0 21 chr5 92682889 92682983 -59854276 - PB1D10 SINE Alu -25 92 1 5 1292 328 317 9 19 chr5 92682983 92682994 -59854265 - ID_B1 SINE B4 -50 173 70 5 1292 210 143 0 0 chr5 92683223 92683258 -59854001 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1292 485 134 71 6 chr5 92683273 92683617 -59853642 + (CA)n Simple_repeat Simple_repeat 1 366 0 5 1292 593 258 77 65 chr5 92684379 92684549 -59852710 + B3 SINE B2 20 191 -25 5 1292 504 32 0 0 chr5 92684552 92684614 -59852645 + (TG)n Simple_repeat Simple_repeat 2 63 0 5 1292 213 39 0 0 chr5 92684614 92684639 -59852620 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 5 1292 386 221 0 0 chr5 92685792 92685878 -59851381 + RMER4B LTR ERVK 1 86 -499 5 1292 938 131 7 42 chr5 92685890 92686084 -59851175 + RMER17C LTR ERVK 9 321 -89 5 1292 546 43 0 0 chr5 92686084 92686153 -59851106 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1292 370 203 148 25 chr5 92686153 92686238 -59851021 + RMER17C LTR ERVK 322 405 -5 5 1292 1650 144 190 41 chr5 92686219 92686619 -59850640 + RMER4B LTR ERVK 61 462 -4 5 1292 3663 122 47 28 chr5 92686619 92686710 -59850549 - RLTR5_Mm LTR ERV1 0 628 535 5 1292 237 33 0 0 chr5 92686710 92686740 -59850519 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1292 3663 122 47 28 chr5 92686740 92687264 -59849995 - RLTR5_Mm LTR ERV1 -94 534 3 5 1292 646 34 22 0 chr5 92687513 92687602 -59849657 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 5 1292 910 90 119 0 chr5 92689179 92689313 -59847946 - B1_Mur4 SINE Alu 0 150 1 5 1292 909 60 15 8 chr5 92689391 92689525 -59847734 + (GGA)n Simple_repeat Simple_repeat 3 137 0 5 1292 231 167 0 40 chr5 92689796 92689846 -59847413 + C-rich Low_complexity Low_complexity 1 48 0 5 1292 751 259 12 53 chr5 92690487 92690658 -59846601 + RSINE1 SINE B4 2 165 0 5 1292 703 133 44 16 chr5 92690662 92691241 -59846018 + (CA)n Simple_repeat Simple_repeat 1 595 0 5 1292 471 231 75 88 chr5 92692266 92692413 -59844846 + B1F SINE Alu 5 149 0 5 1292 203 335 222 25 chr5 92693112 92693274 -59843985 - L2b LINE L2 -32 3343 3150 5 1292 307 361 122 13 chr5 92693420 92693723 -59843536 + Charlie2a DNA MER1_type 83 418 -2443 5 1292 541 319 17 67 chr5 92693770 92693948 -59843311 + MER67A LTR ERV1 363 531 -12 5 1292 573 234 131 0 chr5 92694296 92694433 -59842826 - RSINE1 SINE B4 -9 156 2 5 1292 507 267 58 52 chr5 92694583 92694737 -59842522 - RSINE1 SINE B4 -7 158 4 5 1292 335 253 76 11 chr5 92694871 92694963 -59842296 - B1F1 SINE Alu -51 98 1 5 1292 724 161 7 7 chr5 92695557 92695701 -59841558 + GA-rich Low_complexity Low_complexity 1 144 0 5 1292 199 297 68 19 chr5 92696125 92696228 -59841031 + L2 LINE L2 2712 2819 -600 5 1292 235 196 88 18 chr5 92696228 92696285 -59840974 + PB1D10 SINE Alu 1 61 -56 5 1292 279 0 0 0 chr5 92696288 92696319 -59840940 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1292 807 70 0 0 chr5 92696319 92696433 -59840826 + (GA)n Simple_repeat Simple_repeat 1 115 0 5 1292 465 19 0 0 chr5 92696525 92696579 -59840680 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1292 182 105 26 0 chr5 92697253 92697291 -59839968 + (TTAG)n Simple_repeat Simple_repeat 3 41 0 5 1292 860 148 14 27 chr5 92697291 92697430 -59839829 - B1_Mur1 SINE Alu -10 139 2 5 1292 240 212 0 0 chr5 92697579 92697645 -59839614 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 5 1292 927 177 0 0 chr5 92697649 92697796 -59839463 - B1_Mus2 SINE Alu 0 147 1 5 1292 1447 66 0 11 chr5 92698212 92698396 -59838863 + B2_Mm2 SINE B2 2 183 -12 5 1292 911 112 40 34 chr5 92698559 92698707 -59838552 - B1_Mur4 SINE Alu -1 149 1 5 1292 534 285 0 113 chr5 92698763 92698949 -59838310 + ID_B1 SINE B4 60 224 0 5 1292 871 161 0 92 chr5 92698786 92698950 -59838309 + B1_Mur3 SINE Alu 1 149 0 5 1292 809 199 71 35 chr5 92698958 92698998 -59838261 - B3 SINE B2 -10 206 168 5 1292 185 0 0 39 chr5 92698998 92699024 -59838235 + (TTA)n Simple_repeat Simple_repeat 3 27 0 5 1292 1198 73 3 2 chr5 92699024 92699181 -59838078 - B2_Mm2 SINE B2 -49 167 2 5 1292 370 188 0 0 chr5 92699390 92699454 -59837805 + B3A SINE B2 7 70 -128 5 1292 529 221 39 0 chr5 92699559 92699663 -59837596 + B3A SINE B2 1 108 -90 5 1292 581 248 56 7 chr5 92700422 92700564 -59836695 + B3A SINE B2 50 198 0 5 1292 323 284 107 27 chr5 92701063 92701175 -59836084 - B4 SINE B4 -12 280 160 5 1292 287 261 87 0 chr5 92701194 92701263 -59835996 - B4A SINE B4 -208 84 10 5 1292 381 22 0 0 chr5 92701979 92702025 -59835234 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1292 594 248 0 8 chr5 92702063 92702181 -59835078 + B1_Mur1 SINE Alu 2 118 -31 5 1292 234 0 0 0 chr5 92702192 92702218 -59835041 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 5 1292 287 134 400 22 chr5 92702236 92702326 -59834933 - B2_Mm2 SINE B2 -25 170 47 5 1292 1179 131 11 11 chr5 92702355 92702533 -59834726 - B2_Mm1t SINE B2 -15 178 1 5 1292 56 16 0 0 chr5 92702596 92702659 -59834600 + AT_rich Low_complexity Low_complexity 1 63 0 5 1292 313 250 152 0 chr5 92702871 92702963 -59834296 - B1_Mus1 SINE Alu -41 107 2 5 1292 261 0 0 0 chr5 92703129 92703158 -59834101 + (CACAG)n Simple_repeat Simple_repeat 1 29 0 5 1292 725 169 7 51 chr5 92703690 92703827 -59833432 - B1_Mur3 SINE Alu -12 137 7 5 1292 274 287 83 0 chr5 92703893 92704001 -59833258 + PB1D7 SINE Alu 2 118 -2 5 1292 476 265 0 10 chr5 92704458 92704557 -59832702 - RSINE1 SINE B4 -13 152 55 5 1292 307 291 122 41 chr5 92704646 92704793 -59832466 - B4A SINE B4 -132 160 2 5 1292 1728 212 59 11 chr5 92704812 92705170 -59832089 - RLTR33 LTR ERVK -16 662 288 5 1292 1426 132 8 60 chr5 92705278 92705527 -59831732 - RLTR33 LTR ERVK -442 236 1 5 1292 414 221 62 10 chr5 92706255 92706351 -59830908 + PB1D10 SINE Alu 5 105 -12 5 1292 701 214 54 54 chr5 92706352 92706555 -59830704 - RMER1C Other Other 0 1342 1140 5 1292 1063 219 178 33 chr5 92707354 92707685 -59829574 + RLTR18 LTR ERVK 102 480 -136 5 1292 1157 154 50 27 chr5 92707719 92707939 -59829320 + MTB_Mm LTR MaLR 1 225 -182 5 1292 388 257 33 111 chr5 92707986 92708139 -59829120 + B4A SINE B4 149 289 -3 5 1292 396 0 0 0 chr5 92708278 92708322 -59828937 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1292 302 253 27 0 chr5 92708419 92708494 -59828765 - PB1D10 SINE Alu -28 89 13 5 1292 1308 69 58 0 chr5 92708632 92708806 -59828453 + B2_Mm2 SINE B2 2 185 -10 5 1292 1725 21 0 0 chr5 92709304 92709496 -59827763 - B2_Mm1a SINE B2 -1 192 1 5 1292 233 285 181 26 chr5 92709559 92709714 -59827545 - Kanga1b DNA Tc2 -180 599 421 5 1292 680 245 68 81 chr5 92709719 92709941 -59827318 + B4A SINE B4 2 220 -72 5 1292 215 277 14 58 chr5 92710010 92710079 -59827180 - B1_Mur3 SINE Alu -44 105 40 5 1292 281 301 107 0 chr5 92710451 92710554 -59826705 - Kanga1b DNA Tc2 -542 237 125 5 1292 206 116 23 0 chr5 92710678 92710721 -59826538 + (TA)n Simple_repeat Simple_repeat 2 45 0 5 1292 2338 211 129 85 chr5 92710734 92711455 -59825804 - RMER13A LTR ERVK -107 753 1 5 1292 457 194 48 19 chr5 92711546 92711651 -59825608 - PB1D10 SINE Alu -8 109 2 5 1292 403 275 81 50 chr5 92711719 92711998 -59825261 + MTEb LTR MaLR 56 378 -1 5 1292 21 0 0 0 chr5 92712583 92712604 -59824655 + AT_rich Low_complexity Low_complexity 1 21 0 5 1292 299 102 66 33 chr5 92712630 92712691 -59824568 - B3 SINE B2 -10 206 144 5 1292 336 228 38 38 chr5 92713561 92713666 -59823593 - PB1D7 SINE Alu -13 107 3 5 1292 214 308 51 0 chr5 92714374 92714452 -59822807 + ID_B1 SINE B4 44 125 -99 5 1292 556 215 56 32 chr5 92715146 92715271 -59821988 - B1F1 SINE Alu -21 128 1 5 1292 255 319 31 101 chr5 92715271 92715302 -59821957 - MT2B LTR ERVL -445 156 135 5 1292 261 0 0 0 chr5 92716224 92716253 -59821006 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1292 26 40 0 20 chr5 92716374 92716404 -59820855 + AT_rich Low_complexity Low_complexity 1 30 0 5 1292 1211 71 58 12 chr5 92716404 92716576 -59820683 - B2_Mm2 SINE B2 -14 181 2 5 1292 26 40 0 20 chr5 92716576 92716596 -59820663 + AT_rich Low_complexity Low_complexity 1 20 0 5 1292 621 256 73 0 chr5 92718219 92718356 -59818903 + B1_Mur2 SINE Alu 1 147 -2 5 1292 317 263 140 63 chr5 92718389 92718596 -59818663 + ID_B1 SINE B4 2 224 0 5 1292 698 188 21 35 chr5 92719596 92719739 -59817520 + B1_Mus2 SINE Alu 2 142 -5 5 1292 750 138 0 0 chr5 92719744 92719867 -59817392 + (GGAA)n Simple_repeat Simple_repeat 1 123 0 5 1292 234 0 0 0 chr5 92721982 92722008 -59815251 + (GA)n Simple_repeat Simple_repeat 1 26 0 5 1292 360 243 0 26 chr5 92722027 92722103 -59815156 - RSINE1 SINE B4 -8 157 84 5 1292 295 324 62 62 chr5 92722100 92722261 -59814998 - B4A SINE B4 -118 174 14 6 1292 323 276 11 11 chr5 92722545 92722633 -59814626 - B3A SINE B2 -110 88 1 6 1292 270 296 51 0 chr5 92723475 92723573 -59813686 + PB1D10 SINE Alu 2 104 -13 6 1292 319 266 81 18 chr5 92723685 92723796 -59813463 + PB1D7 SINE Alu 1 118 -2 6 1292 427 243 10 0 chr5 92723822 92723925 -59813334 + B1_Mur1 SINE Alu 46 149 0 6 1292 841 239 25 5 chr5 92724253 92724451 -59812808 - B3 SINE B2 0 216 15 6 1292 34 42 0 0 chr5 92724500 92724548 -59812711 + AT_rich Low_complexity Low_complexity 1 48 0 6 1292 304 164 0 52 chr5 92724631 92724689 -59812570 - B3A SINE B2 -108 90 36 6 1292 367 272 10 0 chr5 92724819 92724922 -59812337 - ID_B1 SINE B4 0 224 121 6 1292 337 204 204 0 chr5 92725566 92725654 -59811605 + B3 SINE B2 65 170 -46 6 1292 183 42 0 0 chr5 92725713 92725737 -59811522 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1292 505 215 28 84 chr5 92726416 92726558 -59810701 - B1_Mur2 SINE Alu -6 143 10 6 1292 745 202 33 50 chr5 92726590 92726772 -59810487 - B3A SINE B2 0 198 20 6 1292 343 159 121 10 chr5 92726821 92726953 -59810306 - Lx9 LINE L1 0 7644 7458 6 1292 355 260 70 16 chr5 92727003 92727132 -59810127 + MER5A1 DNA MER1_type 3 138 -28 6 1292 204 40 0 0 chr5 92727395 92727420 -59809839 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1292 1605 47 0 15 chr5 92727431 92727627 -59809632 - B2_Mm1a SINE B2 0 193 1 6 1292 277 260 38 17 chr5 92727627 92727795 -59809464 - B4A SINE B4 -77 215 1 6 1292 188 0 74 0 chr5 92727814 92727841 -59809418 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1292 1112 56 14 7 chr5 92727852 92727997 -59809262 + B1_Mus1 SINE Alu 2 147 -1 6 1292 224 0 65 0 chr5 92727998 92728029 -59809230 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 6 1292 348 24 0 0 chr5 92728096 92728137 -59809122 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1292 1179 40 0 0 chr5 92728155 92728304 -59808955 + B2_Mm2 SINE B2 1 149 -46 6 1292 396 167 115 0 chr5 92728316 92728394 -59808865 + B1_Mur4 SINE Alu 58 144 -6 6 1292 302 236 189 0 chr5 92728501 92728607 -59808652 + B4A SINE B4 1 126 -166 6 1292 263 349 39 26 chr5 92729404 92729557 -59807702 - RSINE1 SINE B4 -9 156 2 6 1292 804 110 8 52 chr5 92730007 92730141 -59807118 + B1_Mus2 SINE Alu 1 128 -19 6 1292 217 254 0 0 chr5 92730141 92730196 -59807063 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 6 1292 234 193 0 0 chr5 92730296 92730353 -59806906 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1292 391 259 60 71 chr5 92730363 92730546 -59806713 - B3A SINE B2 -16 182 2 6 1292 339 313 15 37 chr5 92732043 92732179 -59805080 + B4A SINE B4 160 292 0 6 1292 21 71 0 0 chr5 92732210 92732252 -59805007 + AT_rich Low_complexity Low_complexity 1 42 0 6 1292 180 0 0 0 chr5 92732270 92732290 -59804969 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1292 563 237 24 19 chr5 92732367 92732529 -59804730 - MTD LTR MaLR -244 163 4 6 1292 327 49 0 0 chr5 92732847 92732888 -59804371 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1292 327 320 41 0 chr5 92733197 92733319 -59803940 + L1M4 LINE L1 5688 5814 -360 6 1292 216 250 50 0 chr5 92733520 92733580 -59803679 + ID2 SINE ID 2 64 -19 6 1292 732 211 122 0 chr5 92735224 92735404 -59801855 + B3 SINE B2 2 203 -13 6 1292 244 316 13 13 chr5 92735759 92735836 -59801423 - ID4 SINE ID -3 80 4 6 1292 224 300 122 35 chr5 92735970 92736167 -59801092 + L2 LINE L2 89 302 -3117 6 1292 270 0 0 0 chr5 92736872 92736902 -59800357 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1292 294 218 186 41 chr5 92737227 92737406 -59799853 + L1M5 LINE L1 5306 5505 -786 6 1292 306 50 0 0 chr5 92737483 92737523 -59799736 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1292 406 276 37 15 chr5 92737592 92737728 -59799531 + Lx7 LINE L1 5614 5752 -1944 6 1292 970 201 48 10 chr5 92737891 92738097 -59799162 - B3 SINE B2 -1 215 2 6 1292 299 154 62 25 chr5 92739195 92739275 -59797984 - Lx7 LINE L1 0 7696 7614 6 1292 335 260 87 29 chr5 92739325 92739428 -59797831 + PB1D10 SINE Alu 4 112 -5 6 1292 613 286 12 6 chr5 92739482 92739651 -59797608 + ID_B1 SINE B4 49 218 -6 6 1292 375 261 155 25 chr5 92739660 92739821 -59797438 + B3A SINE B2 1 182 -16 6 1292 863 86 28 7 chr5 92740007 92740148 -59797111 - B1_Mur4 SINE Alu 0 150 7 6 1292 266 0 0 29 chr5 92740211 92740246 -59797013 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1292 1105 72 0 0 chr5 92740246 92740384 -59796875 - B1_Mus1 SINE Alu -8 140 3 6 1292 329 273 63 112 chr5 92740684 92740969 -59796290 - Lx8 LINE L1 0 7473 7203 6 1292 841 212 21 32 chr5 92740971 92741141 -59796118 + B3 SINE B2 29 202 -14 6 1292 213 39 0 0 chr5 92741141 92741167 -59796092 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 6 1292 841 212 21 32 chr5 92741167 92741186 -59796073 + B3 SINE B2 203 216 0 6 1292 848 227 69 25 chr5 92741263 92741466 -59795793 + B3 SINE B2 5 216 0 6 1292 459 319 51 78 chr5 92742067 92742360 -59794899 + B4 SINE B4 6 290 -2 6 1292 191 242 0 16 chr5 92742400 92742463 -59794796 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1292 445 278 28 7 chr5 92742587 92742732 -59794527 - L1MA10 LINE L1 -9 6325 6178 6 1292 290 221 35 18 chr5 92743342 92743454 -59793805 - ID4 SINE ID -33 119 4 6 1292 1258 176 14 5 chr5 92743598 92743821 -59793438 + URR1B DNA MER1_type 1 225 0 6 1292 2039 173 119 37 chr5 92743949 92744436 -59792823 - RLTR11A2 LTR ERVK 0 527 1 6 1292 2180 92 75 3 chr5 92744577 92744882 -59792377 - ORR1A2 LTR MaLR 0 327 1 6 1292 231 288 133 17 chr5 92744898 92745018 -59792241 - LTR16B LTR ERVL 0 463 330 6 1292 1412 79 21 0 chr5 92745031 92745221 -59792038 - B2_Mm2 SINE B2 0 195 2 6 1292 385 190 0 77 chr5 92746154 92746245 -59791014 - MT2B LTR ERVL -351 250 167 6 1292 588 74 0 0 chr5 92746166 92746247 -59791012 - B1_Mus2 SINE Alu -66 81 1 6 1292 419 162 0 13 chr5 92746180 92746255 -59791004 - B4 SINE B4 -140 152 79 6 1292 22 35 0 0 chr5 92746299 92746328 -59790931 + AT_rich Low_complexity Low_complexity 1 29 0 6 1292 1181 82 0 28 chr5 92746587 92746763 -59790496 - B2_Mm2 SINE B2 -11 184 14 6 1292 860 184 0 7 chr5 92746835 92746983 -59790276 - B1_Mur3 SINE Alu -1 148 2 6 1292 621 225 249 9 chr5 92747304 92747533 -59789726 + ORR1D2 LTR MaLR 81 364 -6 6 1292 391 368 164 17 chr5 92747593 92748119 -59789140 - LTR33C LTR ERVL -15 614 12 6 1292 211 316 194 8 chr5 92748282 92748416 -59788843 - L2 LINE L2 -571 2848 2690 6 1292 715 248 68 0 chr5 92749578 92749752 -59787507 - B3 SINE B2 -2 196 1 6 1292 1567 195 114 16 chr5 92749772 92750148 -59787111 + MTC LTR MaLR 1 413 -8 6 1292 189 171 0 0 chr5 92750182 92750217 -59787042 + T-rich Low_complexity Low_complexity 1 35 0 6 1292 344 262 7 110 chr5 92750959 92751105 -59786154 - B3 SINE B2 -38 178 48 6 1292 639 60 0 0 chr5 92751551 92751635 -59785624 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 6 1292 563 252 50 0 chr5 92751639 92751778 -59785481 + B1_Mur2 SINE Alu 4 149 0 6 1292 1095 135 128 20 chr5 92753233 92753437 -59783822 + URR1A DNA MER1_type 1 226 0 6 1292 314 164 32 24 chr5 92754452 92754577 -59782682 + (TA)n Simple_repeat Simple_repeat 2 127 0 6 1292 312 213 219 21 chr5 92754608 92754704 -59782555 + PB1D10 SINE Alu 2 116 -1 6 1292 294 377 25 25 chr5 92754892 92755050 -59782209 + RSINE1 SINE B4 4 161 -4 6 1292 594 233 120 38 chr5 92755070 92755253 -59782006 - B3A SINE B2 0 198 1 6 1292 240 275 58 0 chr5 92755287 92755356 -59781903 + ID4_ SINE ID 2 74 -9 6 1292 378 0 0 0 chr5 92757984 92758026 -59779233 + (TA)n Simple_repeat Simple_repeat 1 42 0 6 1292 226 250 56 0 chr5 92758875 92758947 -59778312 - MER106B DNA MER1_type -921 138 63 6 1292 274 354 10 0 chr5 92758960 92759056 -59778203 - PB1D10 SINE Alu -16 101 5 6 1292 346 125 13 34 chr5 92759097 92759164 -59778095 - B2_Mm2 SINE B2 -82 116 46 6 1292 842 106 30 0 chr5 92759244 92759376 -59777883 - B2_Mm1t SINE B2 -57 136 1 6 1292 652 286 161 7 chr5 92759784 92760069 -59777190 + Lx8 LINE L1 6859 7187 -286 6 1292 207 0 0 0 chr5 92762078 92762101 -59775158 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1292 567 29 0 0 chr5 92762342 92762411 -59774848 + (TAA)n Simple_repeat Simple_repeat 1 69 0 6 1292 536 295 63 5 chr5 92762541 92762732 -59774527 + B3 SINE B2 2 203 -13 6 1292 214 87 43 0 chr5 92762746 92762792 -59774467 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 6 1292 233 119 24 0 chr5 92762870 92762912 -59774347 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 6 1292 1110 81 31 0 chr5 92762916 92763076 -59774183 - B2_Mm1t SINE B2 -1 192 28 6 1292 1965 103 15 0 chr5 92763142 92763414 -59773845 - Lx2B LINE L1 -354 6646 6371 6 1292 1044 99 14 0 chr5 92763446 92763588 -59773671 - B1_Mur3 SINE Alu -4 145 2 6 1292 236 311 0 0 chr5 92763986 92764047 -59773212 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1292 505 274 66 12 chr5 92764084 92764250 -59773009 - B4 SINE B4 -99 193 19 7 1292 538 284 233 29 chr5 92764351 92764448 -59772811 - MER44A DNA MER2_type -1 338 219 7 1292 234 0 0 0 chr5 92764448 92764474 -59772785 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1292 270 0 0 0 chr5 92764474 92764503 -59772756 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1292 538 284 233 29 chr5 92764503 92764609 -59772650 - MER44A DNA MER2_type -121 218 93 7 1292 1223 221 171 117 chr5 92764609 92765146 -59772113 - RMER2 LTR ERV1 0 567 2 7 1292 538 284 233 29 chr5 92765146 92765219 -59772040 - MER44A DNA MER2_type -247 92 6 7 1292 429 95 0 0 chr5 92765253 92765316 -59771943 + (CATA)n Simple_repeat Simple_repeat 1 63 0 7 1292 240 35 0 0 chr5 92765369 92765398 -59771861 + (TA)n Simple_repeat Simple_repeat 1 29 0 7 1292 367 256 16 47 chr5 92765403 92765530 -59771729 + MLT1B LTR MaLR 1 123 -267 7 1292 816 145 7 0 chr5 92765604 92765742 -59771517 - B1_Mus2 SINE Alu 0 147 9 7 1292 373 216 86 74 chr5 92765993 92766168 -59771091 + L1M4c LINE L1 1061 1237 -5147 7 1292 401 237 129 17 chr5 92766435 92766551 -59770708 + MT2A LTR ERVL 1 129 -404 7 1292 937 208 236 28 chr5 92766584 92766940 -59770319 + MT2A LTR ERVL 94 523 -10 7 1292 256 114 41 41 chr5 92766957 92767030 -59770229 + (TA)n Simple_repeat Simple_repeat 1 73 0 7 1292 506 223 0 15 chr5 92767907 92768039 -59769220 + (CATATA)n Simple_repeat Simple_repeat 3 132 0 7 1292 1135 75 0 0 chr5 92768039 92768185 -59769074 - B1_Mus1 SINE Alu -2 146 1 7 1292 762 186 84 11 chr5 92770021 92770200 -59767059 - B3 SINE B2 -2 214 23 7 1292 5414 66 10 1 chr5 92770438 92771120 -59766139 - L1_Mus2 LINE L1 0 6566 5879 7 1292 2531 98 8 8 chr5 92771120 92771529 -59765730 + L1Md_F2 LINE L1 5547 5961 -621 7 1292 399 255 19 19 chr5 92771545 92771653 -59765606 + B1F SINE Alu 9 116 -33 7 1292 391 278 47 23 chr5 92771653 92771674 -59765585 + ID_B1 SINE B4 90 221 -3 7 1292 350 256 0 35 chr5 92771680 92771765 -59765494 + ID4 SINE ID 2 83 0 7 1292 270 0 0 0 chr5 92771905 92771935 -59765324 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 7 1292 2213 69 6 59 chr5 92771935 92772275 -59764984 - ORR1A2 LTR MaLR -5 322 1 7 1292 513 121 0 0 chr5 92772278 92772361 -59764898 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 7 1292 441 238 0 38 chr5 92772391 92772496 -59764763 - PB1D10 SINE Alu -12 105 5 7 1292 1045 75 37 12 chr5 92772816 92772977 -59764282 - B2_Mm2 SINE B2 -3 192 28 7 1292 441 0 0 0 chr5 92773032 92773081 -59764178 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1292 1289 286 136 30 chr5 92773560 92774252 -59763007 - Lx8 LINE L1 -349 7124 6360 7 1292 270 0 0 0 chr5 92774648 92774678 -59762581 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1292 241 217 33 16 chr5 92774761 92774822 -59762437 - RSINE1 SINE B4 -88 77 16 7 1292 768 228 174 58 chr5 92775105 92775468 -59761791 - MTD LTR MaLR -14 405 1 7 1292 276 283 28 19 chr5 92777505 92777613 -59759646 + CT-rich Low_complexity Low_complexity 2 110 0 7 1292 602 214 0 0 chr5 92779864 92779967 -59757292 + B1_Mus1 SINE Alu 27 129 -19 7 1292 811 53 18 0 chr5 92779967 92780080 -59757179 + (TC)n Simple_repeat Simple_repeat 1 115 0 7 1292 207 0 0 0 chr5 92780080 92780102 -59757157 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1292 808 214 14 14 chr5 92780126 92780273 -59756986 + B1_Mur2 SINE Alu 3 149 0 7 1292 741 116 19 0 chr5 92780349 92780504 -59756755 + (CA)n Simple_repeat Simple_repeat 1 158 0 7 1292 228 111 0 0 chr5 92780681 92780717 -59756542 + (TTA)n Simple_repeat Simple_repeat 2 37 0 7 1292 719 176 7 34 chr5 92780717 92780864 -59756395 - B1_Mur2 SINE Alu -2 147 5 7 1292 6785 110 8 31 chr5 92781003 92781605 -59755654 - RLTR13D2 LTR ERVK 0 1023 431 7 1292 1422 45 0 32 chr5 92781605 92781629 -59755630 - B2_Mm1a SINE B2 -13 180 161 7 1292 207 0 0 0 chr5 92781629 92781652 -59755607 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 1292 1422 45 0 32 chr5 92781652 92781812 -59755447 - B2_Mm1a SINE B2 -33 160 2 7 1292 6785 110 8 31 chr5 92781812 92782251 -59755008 - RLTR13D2 LTR ERVK -593 430 6 7 1292 186 43 0 0 chr5 92782430 92782453 -59754806 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1292 824 170 0 0 chr5 92783023 92783164 -59754095 + URR1A DNA MER1_type 81 221 -5 7 1292 568 156 1 19 chr5 92783166 92783271 -59753988 - B1_Mur4 SINE Alu 0 150 46 7 1292 328 225 0 70 chr5 92783288 92783374 -59753885 - ID4 SINE ID 0 83 4 7 1292 333 0 0 0 chr5 92783377 92783414 -59753845 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 7 1292 907 112 0 29 chr5 92784198 92784336 -59752923 + B1_Mur3 SINE Alu 1 134 -15 7 1292 342 0 0 0 chr5 92784343 92784381 -59752878 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 7 1292 269 275 68 68 chr5 92784629 92784746 -59752513 + B4 SINE B4 79 195 -97 7 1292 379 212 47 14 chr5 92784651 92784756 -59752503 + PB1D9 SINE Alu 12 114 -35 7 1292 4091 188 106 14 chr5 92785520 92786527 -59750732 - Lx6 LINE L1 -6 7454 6355 7 1292 4058 128 111 85 chr5 92786541 92787398 -59749861 - RMER21A LTR ERV1 -2 945 67 7 1292 1268 289 51 49 chr5 92787667 92788097 -59749162 - RCHARR1 DNA MER1_type -480 494 64 7 1292 198 0 0 0 chr5 92788530 92788552 -59748707 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 7 1292 906 145 14 20 chr5 92788564 92788712 -59748547 - B1_Mur3 SINE Alu 0 149 3 7 1292 643 96 110 13 chr5 92788799 92788909 -59748350 - B1_Mur4 SINE Alu -2 125 18 7 1292 216 0 0 0 chr5 92788951 92788975 -59748284 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1292 284 291 0 37 chr5 92790536 92790618 -59746641 - B1F SINE Alu -13 136 58 7 1292 238 222 37 32 chr5 92791419 92791457 -59745802 + B4 SINE B4 42 105 -119 7 1292 277 128 0 0 chr5 92791457 92791496 -59745763 + B1_Mus1 SINE Alu 1 39 -109 7 1292 238 222 37 32 chr5 92791496 92791510 -59745749 + B4 SINE B4 106 132 -92 7 1292 1204 50 0 0 chr5 92791590 92791731 -59745528 + B1_Mus2 SINE Alu 2 142 -5 7 1292 1161 118 0 0 chr5 92791734 92791912 -59745347 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 7 1292 385 112 0 36 chr5 92791979 92792062 -59745197 - L1Md_F2 LINE L1 0 6582 6503 7 1292 225 0 0 0 chr5 92793026 92793051 -59744208 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1292 306 0 0 0 chr5 92793051 92793084 -59744175 + (TA)n Simple_repeat Simple_repeat 2 35 0 7 1292 309 209 209 0 chr5 92793400 92793529 -59743730 - RMER17A LTR ERVK -250 501 346 7 1292 276 311 48 130 chr5 92794746 92794822 -59742437 + B4A SINE B4 27 216 -76 7 1292 668 221 8 0 chr5 92794822 92794953 -59742306 + B1F SINE Alu 7 138 -11 7 1292 560 178 33 0 chr5 92795176 92795266 -59741993 + B1_Mur3 SINE Alu 9 101 -48 7 1292 334 212 118 8 chr5 92796242 92796361 -59740898 - MER33 DNA MER1_type -6 318 187 7 1292 605 196 9 0 chr5 92796601 92796713 -59740546 - B3A SINE B2 -85 113 1 7 1292 1344 214 125 27 chr5 92796896 92797265 -59739994 - MTD LTR MaLR -14 405 1 7 1292 265 239 14 29 chr5 92797324 92797393 -59739866 + ID4 SINE ID 2 69 -14 7 1292 549 324 43 29 chr5 92798513 92798793 -59738466 - B4A SINE B4 -8 284 1 7 1292 248 0 0 30 chr5 92798943 92798976 -59738283 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 7 1293 315 299 21 49 chr5 92799275 92799419 -59737840 + L1MEg LINE L1 1883 2022 -4062 7 1293 606 187 99 50 chr5 92799423 92799564 -59737695 + B3 SINE B2 2 149 -67 7 1293 372 154 15 0 chr5 92800277 92800342 -59736917 + B3 SINE B2 146 211 -5 7 1293 258 81 0 0 chr5 92801361 92801398 -59735861 + (TGGA)n Simple_repeat Simple_repeat 3 39 0 7 1293 440 198 12 34 chr5 92801980 92802086 -59735173 + PB1D9 SINE Alu 18 124 -3 7 1293 315 65 0 0 chr5 92802598 92802644 -59734615 + (TTG)n Simple_repeat Simple_repeat 3 48 0 7 1293 275 198 27 34 chr5 92802759 92802827 -59734432 - PB1D10 SINE Alu -20 107 33 7 1293 602 129 7 61 chr5 92802851 92802982 -59734277 - B1_Mur2 SINE Alu -1 148 2 7 1293 661 143 8 16 chr5 92803606 92803734 -59733525 + GA-rich Low_complexity Low_complexity 4 130 0 7 1293 835 149 50 0 chr5 92804319 92804460 -59732799 + B1_Mur3 SINE Alu 1 148 -1 7 1293 185 94 31 0 chr5 92805119 92805151 -59732108 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 7 1293 215 167 16 16 chr5 92805154 92805168 -59732091 + A-rich Low_complexity Low_complexity 4 17 0 7 1293 668 231 23 169 chr5 92805168 92805429 -59731830 + ID_B1 SINE B4 1 223 -1 7 1293 215 167 16 16 chr5 92805429 92805475 -59731784 + A-rich Low_complexity Low_complexity 18 63 0 7 1293 350 271 111 15 chr5 92805505 92805640 -59731619 + B1F SINE Alu 1 148 -1 7 1293 503 274 196 53 chr5 92805651 92805952 -59731307 - Charlie5 DNA MER1_type -50 2574 2231 7 1293 277 238 29 116 chr5 92806327 92806465 -59730794 - MLT1F2 LTR MaLR -63 497 372 7 1293 667 144 12 228 chr5 92806742 92806913 -59730346 + B1_Mus1 SINE Alu 9 142 -6 7 1293 284 382 40 65 chr5 92806746 92806945 -59730314 + B4A SINE B4 99 292 0 7 1293 342 0 0 0 chr5 92807005 92807043 -59730216 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1293 574 241 70 42 chr5 92807043 92807186 -59730073 - RSINE1 SINE B4 -16 149 3 7 1293 1112 184 73 47 chr5 92807704 92807978 -59729281 - Lx7 LINE L1 0 7696 7416 7 1293 1101 207 76 16 chr5 92807997 92808247 -59729012 - Lx7 LINE L1 -1740 5956 5692 7 1293 3065 148 69 61 chr5 92808242 92808450 -59728809 - Lx7 LINE L1 -1063 4817 4626 7 1293 315 0 0 0 chr5 92808450 92808485 -59728774 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1293 3065 148 69 61 chr5 92808485 92808930 -59728329 - Lx7 LINE L1 -1255 4625 4159 7 1293 2272 142 26 51 chr5 92808935 92809138 -59728121 - Lx7 LINE L1 -4094 1786 1596 7 1293 1262 87 49 0 chr5 92809138 92809165 -59728094 - B2_Mm2 SINE B2 -1 194 159 7 1293 261 0 0 0 chr5 92809165 92809194 -59728065 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 7 1293 1262 87 49 0 chr5 92809194 92809349 -59727910 - B2_Mm2 SINE B2 -37 158 4 7 1293 2272 142 26 51 chr5 92809349 92809533 -59727726 - Lx7 LINE L1 -4285 1595 1422 7 1293 1232 48 0 0 chr5 92809533 92809680 -59727579 + B1_Mus2 SINE Alu 1 147 0 8 1293 2272 142 26 51 chr5 92809680 92809782 -59727477 - Lx7 LINE L1 -4459 1421 1308 7 1293 35 54 0 0 chr5 92809806 92809862 -59727397 + AT_rich Low_complexity Low_complexity 1 56 0 8 1293 1102 94 62 6 chr5 92809862 92810023 -59727236 - B2_Mm2 SINE B2 -25 170 1 8 1293 312 133 50 0 chr5 92810023 92810083 -59727176 - Lx7 LINE L1 -4553 1327 1265 7 1293 284 19 36 36 chr5 92810091 92810146 -59727113 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 8 1293 1194 34 0 7 chr5 92810146 92810285 -59726974 - B1_Mus2 SINE Alu -8 139 1 8 1293 1902 177 48 5 chr5 92810285 92810660 -59726599 - Lx7 LINE L1 -6564 1164 774 7 1293 415 258 174 0 chr5 92810786 92810918 -59726341 + L1_Mur3 LINE L1 490 644 -7068 8 1293 223 182 0 0 chr5 92811095 92811139 -59726120 + A-rich Low_complexity Low_complexity 1 44 0 8 1293 354 303 50 0 chr5 92811210 92811309 -59725950 + B1F2 SINE Alu 5 108 -41 8 1293 319 305 41 33 chr5 92811309 92811332 -59725927 + ID_B1 SINE B4 86 208 -16 8 1293 1197 68 0 0 chr5 92811624 92811772 -59725487 - B1_Mus1 SINE Alu 0 148 1 8 1293 21 36 0 0 chr5 92811843 92811871 -59725388 + AT_rich Low_complexity Low_complexity 1 28 0 8 1293 1078 98 21 0 chr5 92811880 92812023 -59725236 + B1_Mus2 SINE Alu 1 146 -1 8 1293 544 91 44 22 chr5 92812281 92812416 -59724843 + (CAGAGA)n Simple_repeat Simple_repeat 2 139 0 8 1293 727 285 130 13 chr5 92812856 92813094 -59724165 + B4A SINE B4 1 266 -26 8 1293 261 0 0 0 chr5 92813097 92813126 -59724133 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1293 423 0 0 0 chr5 92813126 92813172 -59724087 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 1293 729 184 14 49 chr5 92813936 92814073 -59723186 - B3 SINE B2 0 216 85 8 1293 1808 191 45 6 chr5 92814073 92814426 -59722833 - ORR1D1 LTR MaLR 0 374 8 8 1293 481 221 44 64 chr5 92814528 92814685 -59722574 + B4A SINE B4 27 232 -60 8 1293 860 178 276 9 chr5 92814681 92814891 -59722368 - MTC LTR MaLR -27 394 129 8 1293 504 32 0 0 chr5 92814913 92814975 -59722284 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 1293 1243 61 0 30 chr5 92814979 92815148 -59722111 - B2_Mm2 SINE B2 -30 165 2 8 1293 472 167 0 0 chr5 92815165 92815243 -59722016 - MTC LTR MaLR -339 80 3 8 1293 396 0 0 0 chr5 92815642 92815686 -59721573 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1293 900 253 66 22 chr5 92818075 92818346 -59718913 - L1MB7 LINE L1 -248 5936 5654 8 1293 3069 115 121 30 chr5 92818433 92818969 -59718290 + RMER4B LTR ERVK 1 585 0 8 1293 236 242 155 21 chr5 92819099 92819196 -59718063 - L1MB7 LINE L1 -552 5626 5517 8 1293 205 296 112 66 chr5 92820179 92820319 -59716940 + MIR SINE MIR 2 149 -113 8 1293 700 221 105 0 chr5 92820319 92820509 -59716750 + B3 SINE B2 2 211 -5 8 1293 205 296 112 66 chr5 92820509 92820520 -59716739 + MIR SINE MIR 150 160 -102 8 1293 541 230 161 6 chr5 92822427 92822589 -59714670 + MER20 DNA MER1_type 23 209 -10 8 1293 249 255 242 11 chr5 92822807 92822902 -59714357 + PB1 SINE Alu 3 119 -8 8 1293 219 289 0 0 chr5 92823336 92823388 -59713871 + PB1D10 SINE Alu 58 109 -8 8 1293 219 220 0 0 chr5 92823390 92823440 -59713819 + GA-rich Low_complexity Low_complexity 3 52 0 8 1293 658 194 0 18 chr5 92823473 92823636 -59713623 + GA-rich Low_complexity Low_complexity 3 162 0 8 1293 348 24 0 0 chr5 92824265 92824306 -59712953 + (CAAGA)n Simple_repeat Simple_repeat 2 42 0 8 1293 1740 16 0 0 chr5 92824547 92824739 -59712520 - B2_Mm1a SINE B2 -1 192 1 8 1293 265 266 24 37 chr5 92824904 92824986 -59712273 - ID4 SINE ID 0 83 3 8 1293 296 282 113 15 chr5 92825083 92825216 -59712043 - LTR87 LTR ERVL? -6 618 473 8 1293 414 39 0 0 chr5 92825521 92825573 -59711686 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1293 637 233 36 157 chr5 92826106 92826270 -59710989 - Tigger7 DNA MER2_type -3 2488 2322 8 1293 3709 34 0 5 chr5 92826270 92826708 -59710551 + L1Md_F2 LINE L1 6135 6570 -12 8 1293 637 233 36 157 chr5 92826708 92826823 -59710436 - Tigger7 DNA MER2_type -170 2321 2243 8 1293 234 279 12 25 chr5 92827479 92827560 -59709699 + ID2 SINE ID 4 83 0 8 1293 198 0 0 0 chr5 92827732 92827754 -59709505 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1293 414 305 65 24 chr5 92827841 92828009 -59709250 - LTR87 LTR ERVL? -4 620 446 8 1293 256 298 103 28 chr5 92828833 92828978 -59708281 - MER119 DNA MER1_type -17 566 411 8 1293 345 310 58 90 chr5 92829035 92829191 -59708068 - RSINE1 SINE B4 0 165 15 8 1293 1394 54 38 5 chr5 92829211 92829397 -59707862 - B2_Mm2 SINE B2 -3 192 1 8 1293 1043 240 232 16 chr5 92829755 92830104 -59707155 - MTE2b LTR MaLR -3 376 3 8 1293 512 15 15 0 chr5 92831160 92831225 -59706034 + (CA)n Simple_repeat Simple_repeat 2 67 0 8 1293 439 155 9 97 chr5 92832964 92833078 -59704181 + Lx4A LINE L1 6954 7057 -1 8 1293 405 58 0 0 chr5 92834015 92834067 -59703192 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 8 1293 189 0 0 0 chr5 92834290 92834311 -59702948 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1293 377 207 45 22 chr5 92834344 92834433 -59702826 + B3A SINE B2 70 160 -38 8 1293 342 0 0 0 chr5 92834439 92834477 -59702782 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1293 210 329 12 0 chr5 92834487 92834569 -59702690 + (TG)n Simple_repeat Simple_repeat 1 83 0 8 1293 487 280 134 19 chr5 92834571 92834833 -59702426 - B4A SINE B4 0 292 1 8 1293 261 0 0 0 chr5 92834847 92834876 -59702383 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1293 267 256 12 24 chr5 92834956 92835040 -59702219 - ID4 SINE ID 0 83 1 8 1293 285 114 0 0 chr5 92835047 92835091 -59702168 - L1_Mus3 LINE L1 -32 6606 6563 8 1293 235 305 24 0 chr5 92835238 92835320 -59701939 - BC1_Mm scRNA scRNA -67 85 2 8 1293 205 119 0 48 chr5 92835337 92835399 -59701860 + T-rich Low_complexity Low_complexity 1 59 0 8 1293 689 240 13 20 chr5 92835414 92835563 -59701696 + B1_Mur1 SINE Alu 1 148 -1 8 1293 189 0 0 0 chr5 92835565 92835586 -59701673 + (CCAA)n Simple_repeat Simple_repeat 1 21 0 8 1293 294 246 130 9 chr5 92835630 92835745 -59701514 - B1F1 SINE Alu -16 133 5 8 1293 374 358 0 0 chr5 92836081 92836204 -59701055 + (CA)n Simple_repeat Simple_repeat 2 124 0 8 1293 243 132 0 0 chr5 92836234 92836272 -59700987 + Lx8 LINE L1 7419 7456 -17 8 1293 571 215 97 30 chr5 92836320 92836454 -59700805 - RSINE1 SINE B4 -10 155 13 8 1293 239 258 48 0 chr5 92836461 92836523 -59700736 + B4A SINE B4 81 145 -147 8 1293 483 191 36 18 chr5 92836470 92836582 -59700677 + PB1D7 SINE Alu 7 120 0 8 1293 1166 99 71 11 chr5 92836861 92837045 -59700214 + B2_Mm2 SINE B2 1 195 0 8 1293 209 290 0 46 chr5 92837119 92837184 -59700075 + polypyrimidine Low_complexity Low_complexity 2 63 0 8 1293 467 307 71 0 chr5 92837216 92837343 -59699916 - RSINE1 SINE B4 -29 136 1 8 1293 454 254 32 8 chr5 92837540 92837663 -59699596 - ID_B1 SINE B4 -18 206 81 8 1293 26 0 0 0 chr5 92839091 92839117 -59698142 + AT_rich Low_complexity Low_complexity 1 26 0 8 1293 865 138 80 0 chr5 92839129 92839267 -59697992 + B1_Mur4 SINE Alu 2 150 0 8 1293 207 100 0 0 chr5 92839275 92839305 -59697954 + (TA)n Simple_repeat Simple_repeat 2 31 0 8 1293 203 0 37 0 chr5 92839589 92839616 -59697643 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 8 1293 24 32 0 0 chr5 92839647 92839678 -59697581 + AT_rich Low_complexity Low_complexity 1 31 0 8 1293 184 293 81 0 chr5 92839940 92840039 -59697220 + MIR SINE MIR 41 147 -115 8 1293 195 42 0 0 chr5 92840341 92840365 -59696894 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 8 1293 1132 105 53 0 chr5 92841376 92841547 -59695712 - B2_Mm2 SINE B2 -11 184 5 8 1293 596 169 0 56 chr5 92841911 92841986 -59695273 + polypurine Low_complexity Low_complexity 2 71 0 8 1293 1090 36 65 0 chr5 92841986 92842124 -59695135 + B1_Mus2 SINE Alu 1 147 0 8 1293 1265 35 0 28 chr5 92842125 92842304 -59694955 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 8 1293 596 169 0 56 chr5 92842304 92842370 -59694889 + polypurine Low_complexity Low_complexity 72 137 0 8 1293 189 0 0 0 chr5 92844621 92844642 -59692617 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 8 1293 25 31 0 0 chr5 92844700 92844732 -59692527 + AT_rich Low_complexity Low_complexity 1 32 0 8 1293 498 268 84 0 chr5 92845564 92845706 -59691553 - ID_B1 SINE B4 -70 154 1 8 1293 433 237 585 35 chr5 92845939 92846125 -59691134 - L1MB3 LINE L1 -261 5922 5637 8 1293 699 236 7 26 chr5 92846125 92846277 -59690982 + B1_Mur1 SINE Alu 1 149 0 8 1293 433 212 34 50 chr5 92846277 92846324 -59690935 - L1MB3 LINE L1 -547 5636 5587 8 1293 489 237 25 8 chr5 92847034 92847153 -59690106 + B1F SINE Alu 27 147 -2 8 1293 256 206 95 0 chr5 92847375 92847438 -59689821 - ID_B1 SINE B4 -4 220 152 8 1293 220 289 78 96 chr5 92847376 92847491 -59689768 - PB1D7 SINE Alu -5 115 3 8 1293 301 190 0 0 chr5 92847685 92847743 -59689516 + L1MB8 LINE L1 6121 6178 0 8 1293 28 48 0 0 chr5 92849018 92849060 -59688199 + AT_rich Low_complexity Low_complexity 1 42 0 8 1293 716 48 19 0 chr5 92849302 92849406 -59687853 + (TTTC)n Simple_repeat Simple_repeat 4 109 0 8 1293 1098 81 162 0 chr5 92849418 92849578 -59687681 - B2_Mm2 SINE B2 -8 187 2 8 1293 471 260 137 0 chr5 92849694 92849840 -59687419 - B4 SINE B4 -123 169 4 8 1293 1422 70 27 0 chr5 92849937 92850123 -59687136 + B2_Mm2 SINE B2 1 191 -4 8 1293 511 212 68 62 chr5 92850265 92850411 -59686848 - B1F2 SINE Alu -2 147 1 8 1293 248 269 75 0 chr5 92850603 92850670 -59686589 + ID_B1 SINE B4 83 154 -70 8 1293 792 218 96 5 chr5 92851150 92851348 -59685911 + B3 SINE B2 1 216 0 8 1293 283 287 93 25 chr5 92852541 92852659 -59684600 - B1F SINE Alu -23 126 1 8 1293 237 323 61 15 chr5 92854027 92854159 -59683100 + B1_Mus2 SINE Alu 1 138 -9 9 1293 1311 86 43 5 chr5 92854346 92854533 -59682726 + B2_Mm2 SINE B2 2 195 0 9 1293 922 130 23 45 chr5 92855436 92855613 -59681646 - B2_Mm2 SINE B2 -22 173 1 9 1293 301 279 0 14 chr5 92856078 92856147 -59681112 + ID4_ SINE ID 6 73 -10 9 1293 295 293 0 13 chr5 92856079 92856155 -59681104 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 9 1293 471 248 22 58 chr5 92856238 92856375 -59680884 + B1F SINE Alu 2 133 -16 9 1293 419 321 66 0 chr5 92856641 92856778 -59680481 - RSINE1 SINE B4 -19 146 1 9 1293 445 190 78 0 chr5 92856780 92856896 -59680363 - ID_B1 SINE B4 -7 217 93 9 1293 25 0 0 0 chr5 92856983 92857008 -59680251 + AT_rich Low_complexity Low_complexity 1 25 0 9 1293 613 222 34 27 chr5 92857861 92858009 -59679250 + B1F SINE Alu 1 149 0 9 1293 281 298 57 28 chr5 92858460 92858691 -59678568 + L1M3 LINE L1 5095 5328 -815 9 1293 260 246 0 16 chr5 92858703 92858772 -59678487 + B3 SINE B2 19 82 -116 9 1293 195 42 0 0 chr5 92858953 92858977 -59678282 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1293 343 261 62 21 chr5 92858989 92859134 -59678125 + L1MC5 LINE L1 7099 7249 -712 9 1293 216 0 0 0 chr5 92859830 92859854 -59677405 + (CTG)n Simple_repeat Simple_repeat 1 24 0 9 1293 786 46 9 0 chr5 92861000 92861109 -59676150 - B1_Mus2 SINE Alu 0 147 38 9 1293 22 56 0 0 chr5 92861222 92861258 -59676001 + AT_rich Low_complexity Low_complexity 1 36 0 9 1293 262 289 12 50 chr5 92861617 92861697 -59675562 - ID4_ SINE ID -3 80 4 9 1293 210 143 0 0 chr5 92863860 92863895 -59673364 + (CCG)n Simple_repeat Simple_repeat 2 36 0 9 1293 669 248 127 25 chr5 92864985 92865376 -59671883 - L1MA5A LINE L1 -295 6005 5583 9 1293 851 290 31 48 chr5 92865449 92865742 -59671517 - B4A SINE B4 -4 288 1 9 1293 1120 38 0 0 chr5 92865779 92865912 -59671347 + B1_Mm SINE Alu 2 134 -13 9 1293 180 0 0 0 chr5 92865912 92865932 -59671327 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 9 1293 320 217 105 32 chr5 92866054 92866149 -59671110 + PB1D10 SINE Alu 7 108 -9 9 1293 496 324 122 41 chr5 92866198 92866429 -59670830 - B4A SINE B4 0 292 42 9 1293 3392 20 8 5 chr5 92866429 92866824 -59670435 - MTA_Mm LTR MaLR 0 396 1 9 1293 496 324 122 41 chr5 92866824 92866862 -59670397 - B4A SINE B4 -251 41 1 9 1293 659 222 39 39 chr5 92866917 92867095 -59670164 - B3A SINE B2 -18 180 3 9 1293 342 288 91 7 chr5 92867305 92867459 -59669800 - RMER20B LTR ERVK -281 346 180 9 1293 180 380 18 42 chr5 92868217 92868382 -59668877 + L2 LINE L2 2834 2994 -425 9 1293 959 225 75 157 chr5 92868394 92868795 -59668464 - ORR1D1 LTR MaLR -4 370 3 9 1293 373 173 11 20 chr5 92869073 92869161 -59668098 + L1MB7 LINE L1 5902 5985 -199 9 1293 247 211 35 0 chr5 92870058 92870115 -59667144 + GA-rich Low_complexity Low_complexity 5 63 0 9 1293 643 217 47 0 chr5 92871153 92871282 -59665977 + B1F SINE Alu 1 135 -14 9 1293 625 176 80 14 chr5 92871476 92871614 -59665645 + B1_Mus2 SINE Alu 1 147 0 9 1293 22 0 0 0 chr5 92871722 92871744 -59665515 + AT_rich Low_complexity Low_complexity 1 22 0 9 1293 918 100 0 0 chr5 92871822 92871952 -59665307 + B1_Mur3 SINE Alu 13 142 -7 9 1293 22 0 0 0 chr5 92871967 92871989 -59665270 + AT_rich Low_complexity Low_complexity 1 22 0 9 1293 1218 41 0 7 chr5 92873483 92873630 -59663629 + B1_Mus2 SINE Alu 2 147 0 9 1293 447 287 29 14 chr5 92874166 92874304 -59662955 + B1F SINE Alu 2 141 -8 9 1293 237 350 0 0 chr5 92874319 92874399 -59662860 + ID4_ SINE ID 2 81 -2 9 1293 972 55 32 70 chr5 92874586 92874742 -59662517 - B1_Mur4 SINE Alu 0 150 1 9 1293 452 270 179 0 chr5 92874813 92875009 -59662250 - MIR SINE MIR -1 261 31 9 1293 471 233 46 8 chr5 92875807 92875937 -59661322 - B1F2 SINE Alu -10 139 5 9 1293 260 308 100 25 chr5 92876201 92876321 -59660938 + L2c LINE L2 3259 3387 0 9 1293 569 224 17 17 chr5 92876751 92876869 -59660390 - PB1D9 SINE Alu -1 119 2 9 1293 266 219 26 40 chr5 92877017 92877093 -59660166 - B4 SINE B4 -217 75 1 9 1293 301 174 66 55 chr5 92877336 92877427 -59659832 + B2_Mm2 SINE B2 1 92 -103 9 1293 222 191 0 0 chr5 92878182 92878229 -59659030 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 9 1293 189 316 25 25 chr5 92878602 92878683 -59658576 + MIRm SINE MIR 88 168 -108 9 1293 279 0 0 0 chr5 92878974 92879005 -59658254 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 1293 378 209 0 34 chr5 92879618 92879707 -59657552 - PB1D10 SINE Alu -29 88 3 9 1293 404 197 26 0 chr5 92880074 92880150 -59657109 - ID4_ SINE ID -4 79 2 9 1293 485 218 15 61 chr5 92881008 92881140 -59656119 - B1F2 SINE Alu -3 146 21 9 1293 183 114 0 0 chr5 92881296 92881331 -59655928 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1293 478 132 22 162 chr5 92881410 92881475 -59655784 + B1F1 SINE Alu 25 87 -62 9 1293 1538 57 5 10 chr5 92881475 92881669 -59655590 + B2_Mm2 SINE B2 1 193 -2 9 1293 478 132 22 162 chr5 92881669 92881739 -59655520 + B1F1 SINE Alu 88 141 -8 9 1293 359 187 0 13 chr5 92881818 92881894 -59655365 + B1_Mur2 SINE Alu 75 149 0 9 1293 290 227 15 39 chr5 92881994 92882096 -59655163 + PB1D10 SINE Alu 19 117 0 9 1293 313 263 60 93 chr5 92882298 92882449 -59654810 + RSINE1 SINE B4 9 154 -11 9 1293 279 0 0 0 chr5 92882481 92882512 -59654747 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1293 1369 70 27 11 chr5 92882517 92882705 -59654554 + B2_Mm2 SINE B2 2 192 -3 9 1293 287 256 70 0 chr5 92882844 92882930 -59654329 - PB1D10 SINE Alu -9 108 17 9 1293 571 301 69 45 chr5 92883268 92883470 -59653789 + ID_B1 SINE B4 6 212 -12 9 1293 363 44 0 0 chr5 92883470 92883515 -59653744 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 1293 201 287 58 19 chr5 92883528 92883631 -59653628 - MIR SINE MIR -147 115 9 9 1293 1331 97 11 5 chr5 92884062 92884248 -59653011 - B2_Mm2 SINE B2 -8 187 1 9 1293 215 371 19 28 chr5 92884360 92884468 -59652791 + RSINE1 SINE B4 44 150 -15 9 1293 2975 82 10 10 chr5 92884778 92885174 -59652085 + MTA_Mm LTR MaLR 1 396 0 9 1293 575 336 37 15 chr5 92885266 92885535 -59651724 + MLT1A0 LTR MaLR 91 365 0 9 1293 207 0 0 0 chr5 92886138 92886161 -59651098 + (CA)n Simple_repeat Simple_repeat 1 23 0 9 1293 781 251 35 15 chr5 92886444 92886646 -59650613 + B3 SINE B2 5 210 -6 9 1293 322 286 162 43 chr5 92886790 92887024 -59650235 + L1MEd LINE L1 874 1135 -4984 9 1293 216 97 0 0 chr5 92887276 92887307 -59649952 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 9 1293 1334 78 21 16 chr5 92887308 92887502 -59649757 + B2_Mm2 SINE B2 1 195 0 9 1293 470 138 57 0 chr5 92888150 92888273 -59648986 + GA-rich Low_complexity Low_complexity 1 130 0 9 1293 234 0 0 0 chr5 92888273 92888299 -59648960 + (GGGGA)n Simple_repeat Simple_repeat 3 28 0 9 1293 284 280 13 0 chr5 92888905 92888980 -59648279 - ID4 SINE ID -3 80 5 9 1293 333 102 0 0 chr5 92890151 92890210 -59647049 + (TG)n Simple_repeat Simple_repeat 2 60 0 9 1293 456 233 59 15 chr5 92890295 92890430 -59646829 - B1F SINE Alu -8 141 1 9 1293 243 0 0 0 chr5 92891112 92891139 -59646120 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1293 474 231 17 61 chr5 92891538 92891653 -59645606 + B1F1 SINE Alu 1 110 -7 9 1293 281 172 0 15 chr5 92891689 92891754 -59645505 + G-rich Low_complexity Low_complexity 3 66 0 9 1293 305 260 17 23 chr5 92891882 92891998 -59645261 + L1MA5 LINE L1 6077 6196 -104 9 1293 264 276 37 28 chr5 92892090 92892198 -59645061 + PB1D7 SINE Alu 5 113 -7 9 1293 514 259 0 9 chr5 92892314 92892427 -59644832 - PB1D7 SINE Alu 0 120 9 9 1293 213 39 0 0 chr5 92892578 92892604 -59644655 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 9 1293 246 182 0 0 chr5 92892793 92892859 -59644400 + T-rich Low_complexity Low_complexity 1 66 0 9 1293 696 202 24 0 chr5 92892862 92892986 -59644273 - B1F2 SINE Alu -1 148 22 9 1293 1257 47 0 0 chr5 92893049 92893197 -59644062 + B1_Mus1 SINE Alu 1 148 0 9 1293 252 0 0 0 chr5 92893201 92893229 -59644030 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 9 1293 412 241 43 43 chr5 92893771 92893888 -59643371 - PB1D10 SINE Alu 0 117 1 9 1293 189 214 0 0 chr5 92894887 92894929 -59642330 + GA-rich Low_complexity Low_complexity 1 42 0 9 1293 36 0 0 0 chr5 92895369 92895405 -59641854 + AT_rich Low_complexity Low_complexity 1 36 0 9 1293 1274 96 11 0 chr5 92895488 92895666 -59641593 - B2_Mm1t SINE B2 -13 180 1 9 1293 497 149 6 0 chr5 92895716 92895878 -59641381 + GA-rich Low_complexity Low_complexity 1 162 0 9 1293 227 316 0 0 chr5 92895969 92896026 -59641233 + polypurine Low_complexity Low_complexity 3 59 0 9 1293 264 329 14 0 chr5 92896034 92896107 -59641152 + B4A SINE B4 81 154 -138 9 1293 415 257 43 78 chr5 92896044 92896181 -59641078 + PB1 SINE Alu 6 147 -2 9 1293 520 259 41 14 chr5 92896222 92896367 -59640892 + B1F SINE Alu 1 149 0 9 1293 233 276 89 38 chr5 92896525 92896604 -59640655 + ID4 SINE ID 1 83 0 9 1293 1157 61 0 20 chr5 92896702 92896852 -59640407 + B1_Mus1 SINE Alu 2 148 0 1 1293 292 265 46 64 chr5 92897025 92897134 -59640125 - PB1 SINE Alu -7 120 14 1 1293 313 260 81 54 chr5 92897150 92897261 -59639998 + MIR SINE MIR 116 236 -32 1 1293 654 256 28 29 chr5 92897395 92897645 -59639614 - L1M2 LINE L1 -584 5716 5476 1 1293 500 251 178 12 chr5 92897678 92897847 -59639412 + B3A SINE B2 1 197 -1 1 1293 825 215 79 51 chr5 92897859 92898075 -59639184 + B4 SINE B4 2 223 -69 1 1293 599 222 27 6 chr5 92898690 92898823 -59638436 + B1_Mur1 SINE Alu 2 133 -16 1 1293 2665 59 3 3 chr5 92899313 92899651 -59637608 + L1_Mus1 LINE L1 6230 6567 0 1 1293 236 251 17 6 chr5 92899704 92899876 -59637383 + (TG)n Simple_repeat Simple_repeat 1 174 0 1 1293 918 285 42 57 chr5 92899877 92899962 -59637297 - B4A SINE B4 -1 291 213 1 1293 2521 87 0 0 chr5 92899962 92900285 -59636974 - ORR1A2 LTR MaLR 0 327 5 1 1293 918 285 42 57 chr5 92900285 92900482 -59636777 - B4A SINE B4 -80 212 13 1 1293 488 270 113 5 chr5 92900525 92900711 -59636548 - ID_B1 SINE B4 -18 206 1 1 1293 291 323 55 31 chr5 92901063 92901080 -59636179 - B4A SINE B4 -68 224 208 1 1293 1033 211 19 9 chr5 92901080 92901291 -59635968 - B3 SINE B2 0 216 4 1 1293 471 243 9 19 chr5 92901296 92901401 -59635858 - PB1D7 SINE Alu -8 112 9 1 1293 405 203 0 0 chr5 92902214 92902283 -59634976 + ID4_ SINE ID 1 69 -14 1 1293 480 214 68 43 chr5 92902505 92902622 -59634637 - PB1D7 SINE Alu 0 120 1 1 1293 517 278 21 7 chr5 92903374 92903519 -59633740 - B1F SINE Alu -2 147 1 1 1293 1417 58 26 11 chr5 92903678 92903868 -59633391 + B2_Mm1a SINE B2 1 193 0 1 1293 487 275 42 14 chr5 92903986 92904130 -59633129 - MER2 DNA MER2_type -116 229 82 1 1293 3171 54 31 3 chr5 92904276 92904665 -59632594 + MTB LTR MaLR 1 400 0 1 1293 780 291 156 3 chr5 92904796 92905130 -59632129 + Lx9 LINE L1 6300 6684 -960 1 1293 3043 17 36 8 chr5 92905131 92905488 -59631771 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1293 31762 28 25 1 chr5 92905488 92909123 -59628136 + IAPEz-int LTR ERVK 8 3729 -2752 1 1293 14774 25 1 3 chr5 92909106 92910767 -59626492 + IAPEz-int LTR ERVK 4824 6481 0 1 1293 3043 17 36 8 chr5 92910767 92911124 -59626135 + IAPLTR1_Mm LTR ERVK 1 367 0 1 1293 2350 266 68 31 chr5 92911134 92911991 -59625268 + Lx9 LINE L1 6687 7574 -70 1 1293 364 322 43 0 chr5 92912073 92912188 -59625071 + PB1D9 SINE Alu 1 120 0 1 1293 526 306 74 56 chr5 92912207 92912477 -59624782 + B4 SINE B4 1 275 -17 1 1293 260 254 16 0 chr5 92912537 92912600 -59624659 + GA-rich Low_complexity Low_complexity 4 67 0 1 1293 1441 77 0 44 chr5 92912687 92912891 -59624368 - B2_Mm2 SINE B2 0 195 1 1 1293 432 188 59 0 chr5 92912924 92913009 -59624250 - B1F SINE Alu 0 149 60 1 1293 270 0 0 0 chr5 92913067 92913097 -59624162 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1293 761 245 0 7 chr5 92913248 92913388 -59623871 + RSINE1 SINE B4 12 150 -15 1 1293 506 242 108 46 chr5 92913565 92913695 -59623564 + B1F SINE Alu 1 138 -11 1 1293 318 222 11 53 chr5 92913772 92913867 -59623392 + ID_B1 SINE B4 134 224 0 1 1293 378 245 120 19 chr5 92914712 92914820 -59622439 - B1F SINE Alu -28 121 3 1 1293 557 274 65 129 chr5 92915535 92915891 -59621368 + MLT1B LTR MaLR 1 333 -57 1 1293 1662 267 72 12 chr5 92915892 92916403 -59620856 + Lx8 LINE L1 6421 6962 -511 1 1293 385 233 0 14 chr5 92916638 92916712 -59620547 - ID4_ SINE ID -9 74 2 1 1293 246 284 126 10 chr5 92916737 92916840 -59620419 - PB1D10 SINE Alu -2 115 1 1 1293 479 30 0 43 chr5 92917237 92917307 -59619952 + B1_Mus2 SINE Alu 81 147 0 1 1293 415 258 98 62 chr5 92917528 92917772 -59619487 - MER92B LTR ERV1 -9 627 375 1 1293 191 241 0 85 chr5 92917788 92917847 -59619412 - L2 LINE L2 -569 2850 2797 1 1293 344 94 75 0 chr5 92918405 92918458 -59618801 - HAL1-3A_ME LINE L1 -828 2030 1974 1 1293 552 194 0 0 chr5 92918461 92918590 -59618669 + (TG)n Simple_repeat Simple_repeat 2 130 0 1 1293 30 45 0 0 chr5 92919123 92919167 -59618092 + AT_rich Low_complexity Low_complexity 1 44 0 1 1293 805 211 33 7 chr5 92919196 92919349 -59617910 - B3 SINE B2 -13 203 47 1 1293 189 0 0 0 chr5 92919453 92919474 -59617785 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1293 873 150 7 41 chr5 92920762 92920908 -59616351 - B1_Mus2 SINE Alu -6 141 1 1 1293 450 234 30 6 chr5 92920965 92921081 -59616178 + PB1D10 SINE Alu 3 122 -27 1 1293 210 296 0 0 chr5 92921273 92921327 -59615932 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1293 844 244 44 5 chr5 92921418 92921624 -59615635 - B3 SINE B2 -1 215 2 1 1293 1532 58 16 0 chr5 92921834 92922023 -59615236 - B2_Mm2 SINE B2 -2 193 2 1 1293 388 301 28 35 chr5 92922092 92922233 -59615026 - RSINE1 SINE B4 -21 144 5 1 1293 504 0 0 0 chr5 92922430 92922486 -59614773 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1293 573 235 85 92 chr5 92923823 92924066 -59613193 + L1MA8 LINE L1 5996 6234 -57 1 1293 236 28 56 0 chr5 92924066 92924102 -59613157 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1293 573 235 85 92 chr5 92924102 92924153 -59613106 + L1MA8 LINE L1 6235 6287 -4 1 1293 353 328 117 41 chr5 92924278 92924475 -59612784 - Charlie8 DNA MER1_type -1957 471 260 1 1293 375 315 139 16 chr5 92924475 92924596 -59612663 + MLT1A0 LTR MaLR 1 137 -228 1 1293 879 280 66 75 chr5 92924596 92924943 -59612316 + MTEa LTR MaLR 1 344 -35 1 1293 342 257 158 9 chr5 92924934 92925048 -59612211 + MLT1A0 LTR MaLR 231 361 -4 1 1293 406 324 7 27 chr5 92925189 92925338 -59611921 - RSINE1 SINE B4 -17 148 3 1 1293 228 225 0 0 chr5 92925514 92925554 -59611705 + polypyrimidine Low_complexity Low_complexity 5 44 0 1 1293 341 268 12 47 chr5 92925555 92925641 -59611618 - ID4 SINE ID 0 83 1 1 1293 21 0 0 0 chr5 92925931 92925952 -59611307 + AT_rich Low_complexity Low_complexity 1 21 0 1 1293 530 186 107 53 chr5 92925952 92926083 -59611176 - B1F SINE Alu -1 148 11 1 1293 1502 49 38 0 chr5 92926277 92926460 -59610799 + B2_Mm2 SINE B2 2 191 -4 1 1293 518 294 96 16 chr5 92926576 92926763 -59610496 + Charlie1 DNA MER1_type 18 219 -2562 1 1293 181 129 27 41 chr5 92926850 92926923 -59610336 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 1293 506 288 48 136 chr5 92926926 92927199 -59610060 - B4 SINE B4 0 292 44 1 1293 234 324 93 0 chr5 92927210 92927318 -59609941 + Charlie1 DNA MER1_type 2655 2772 -9 1 1293 366 248 9 56 chr5 92927516 92927623 -59609636 + ID_B1 SINE B4 112 213 -11 1 1293 351 0 0 0 chr5 92927623 92927662 -59609597 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1293 1099 107 209 0 chr5 92928179 92928366 -59608893 + URR1A DNA MER1_type 1 226 0 1 1293 576 77 0 0 chr5 92928836 92928914 -59608345 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 1 1293 297 0 0 0 chr5 92928916 92928949 -59608310 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 1 1293 448 258 52 45 chr5 92929857 92929991 -59607268 - ID_B1 SINE B4 -2 222 88 1 1294 297 0 0 0 chr5 92930092 92930125 -59607134 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1294 243 0 0 0 chr5 92930125 92930151 -59607108 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1294 828 274 60 18 chr5 92930349 92930637 -59606622 - MTD LTR MaLR 0 419 31 1 1294 637 124 62 0 chr5 92930719 92930832 -59606427 + PB1D9 SINE Alu 1 120 0 1 1294 552 126 0 0 chr5 92930832 92930919 -59606340 + (A)n Simple_repeat Simple_repeat 1 87 0 1 1294 1064 260 21 38 chr5 92931299 92931587 -59605672 - B4A SINE B4 0 292 10 1 1294 493 313 67 0 chr5 92931907 92932057 -59605202 - Arthur1A DNA Tip100 -6 171 12 1 1294 399 306 27 9 chr5 92932094 92932206 -59605053 - MIRb SINE MIR -114 154 41 1 1294 513 217 16 65 chr5 92932317 92932440 -59604819 + PB1D10 SINE Alu 1 117 0 1 1294 372 88 0 0 chr5 92932896 92932953 -59604306 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1294 411 98 0 0 chr5 92933716 92933777 -59603482 + (CCCTG)n Simple_repeat Simple_repeat 3 63 0 1 1294 333 0 0 0 chr5 92934167 92934204 -59603055 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1294 645 297 86 57 chr5 92935387 92935701 -59601558 - LTR16B2 LTR ERVL -137 325 3 1 1294 231 250 16 16 chr5 92935749 92935810 -59601449 + PB1D7 SINE Alu 59 119 -1 1 1294 904 155 0 17 chr5 92936035 92936212 -59601047 + CT-rich Low_complexity Low_complexity 6 179 0 1 1294 432 0 0 0 chr5 92936327 92936375 -59600884 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1294 395 196 232 28 chr5 92936429 92936571 -59600688 - ID_B1 SINE B4 -2 222 52 1 1294 405 0 0 0 chr5 92936571 92936616 -59600643 + (TTTTC)n Simple_repeat Simple_repeat 2 46 0 1 1294 1169 58 0 0 chr5 92936616 92936755 -59600504 - B1_Mus1 SINE Alu -9 139 1 1 1294 468 211 28 19 chr5 92936827 92936933 -59600326 - ID_B1 SINE B4 -4 220 114 1 1294 586 278 116 0 chr5 92937319 92937517 -59599742 - Lx9 LINE L1 -158 7486 7266 1 1294 268 298 128 0 chr5 92937523 92937617 -59599642 - B1F SINE Alu -41 108 3 1 1294 336 290 19 48 chr5 92937641 92937746 -59599513 - PB1D10 SINE Alu -1 116 15 1 1294 207 88 0 0 chr5 92937933 92937967 -59599292 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1294 289 268 45 23 chr5 92938633 92938721 -59598538 - B1F SINE Alu -19 130 41 1 1294 4015 51 9 51 chr5 92939101 92939635 -59597624 + RLTR1B LTR ERV1 1 512 0 1 1294 415 219 123 9 chr5 92939635 92939741 -59597518 + MLT1H2 LTR MaLR 207 324 -165 1 1294 265 293 84 25 chr5 92939722 92939841 -59597418 + MLT1H2 LTR MaLR 430 555 -24 1 1294 339 340 21 11 chr5 92939849 92939944 -59597315 + RSINE1 SINE B4 7 102 -63 1 1294 351 0 0 0 chr5 92939955 92939994 -59597265 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1294 1076 73 48 48 chr5 92940013 92940199 -59597060 + B2_Mm2 SINE B2 3 188 -7 1 1294 22 0 0 0 chr5 92940219 92940241 -59597018 + AT_rich Low_complexity Low_complexity 1 22 0 1 1294 1636 147 16 95 chr5 92940329 92940667 -59596592 + ORR1A3 LTR MaLR 1 277 -49 1 1294 1193 182 9 5 chr5 92940830 92941045 -59596214 + B3 SINE B2 1 216 0 1 1294 2297 146 12 31 chr5 92941172 92941589 -59595670 + RLTR9E LTR ERVK 1 409 0 1 1294 3865 28 5 0 chr5 92941638 92942072 -59595187 + RLTR10C LTR ERVK 1 436 0 1 1294 1430 60 5 1 chr5 92942072 92942266 -59594993 + MMERVK10C-int LTR ERVK 1 201 -1786 1 1294 232 255 0 0 chr5 92942266 92942313 -59594946 + RLTR27 LTR ERVK 222 268 -41 1 1294 463 68 0 0 chr5 92942316 92942375 -59594884 + MMERVK10C-int LTR ERVK 224 282 -7299 1 1294 1244 41 0 0 chr5 92942376 92942521 -59594738 + B1_Mm SINE Alu 3 147 0 1 1294 252 77 0 0 chr5 92942544 92942583 -59594676 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1294 543 168 150 0 chr5 92942583 92942696 -59594563 + MMERVK10C-int LTR ERVK 270 399 -7182 1 1294 43037 37 0 1 chr5 92942694 92947638 -59589621 + MMERVK10C-int LTR ERVK 870 5810 -1771 1 1294 8042 32 15 0 chr5 92947629 92948546 -59588713 + MMERVK10C-int LTR ERVK 6651 7581 0 1 1294 3838 30 5 0 chr5 92948546 92948980 -59588279 + RLTR10C LTR ERVK 1 436 0 1 1294 5432 67 133 39 chr5 92949036 92949952 -59587307 - RLTR22_Mus LTR ERVK 0 1808 807 1 1294 292 225 62 15 chr5 92949987 92950105 -59587154 - RLTR13D3 LTR ERVK -42 1072 981 1 1294 276 119 0 0 chr5 92950365 92950407 -59586852 - B2_Mm2 SINE B2 -153 42 1 1 1294 26 64 0 0 chr5 92950439 92950486 -59586773 + AT_rich Low_complexity Low_complexity 1 47 0 1 1294 4528 89 36 91 chr5 92950899 92951457 -59585802 - RLTR22_Mur LTR ERVK -1042 806 278 1 1294 1227 48 0 0 chr5 92951457 92951603 -59585656 - B1_Mus2 SINE Alu 0 147 2 1 1294 4528 89 36 91 chr5 92951603 92951897 -59585362 - RLTR22_Mur LTR ERVK -1571 277 1 1 1294 2481 110 94 3 chr5 92951905 92952287 -59584972 + RLTR9B2 LTR ERVK 1 417 -3 1 1294 1364 64 20 41 chr5 92952319 92952515 -59584744 - B2_Mm2 SINE B2 -3 192 1 1 1294 228 273 53 74 chr5 92952871 92952882 -59584377 + MT2B2 LTR ERVL 152 160 -424 1 1294 455 209 33 0 chr5 92952882 92952973 -59584286 + B1F1 SINE Alu 3 96 -53 1 1294 1460 78 0 10 chr5 92952992 92953187 -59584072 - B2_Mm2 SINE B2 0 195 3 1 1294 774 204 204 0 chr5 92953203 92953375 -59583884 - B3 SINE B2 -9 207 1 1 1294 199 346 84 30 chr5 92953542 92953673 -59583586 - MIR SINE MIR -72 190 53 1 1294 499 280 30 0 chr5 92954506 92954638 -59582621 + ID_B1 SINE B4 86 221 -3 1 1294 995 265 26 92 chr5 92954786 92954830 -59582429 - MLT1A0 LTR MaLR -8 357 327 1 1294 1182 70 0 0 chr5 92954830 92954973 -59582286 + B1_Mm SINE Alu 2 144 -3 1 1294 222 37 0 0 chr5 92954973 92955000 -59582259 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1294 995 265 26 92 chr5 92955000 92955336 -59581923 - MLT1A0 LTR MaLR -39 326 2 1 1294 2460 85 5 32 chr5 92955579 92955981 -59581278 + MT2B2 LTR ERVL 1 362 -222 1 1294 323 0 0 0 chr5 92955964 92956003 -59581256 + MT2B2 LTR ERVL 546 584 0 1 1294 388 274 28 0 chr5 92956246 92956352 -59580907 + B1F1 SINE Alu 36 144 -5 1 1294 288 70 0 0 chr5 92956678 92956721 -59580538 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1294 243 0 0 0 chr5 92956721 92956747 -59580512 + (GA)n Simple_repeat Simple_repeat 2 28 0 1 1294 1251 94 0 0 chr5 92956953 92957133 -59580126 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1294 509 44 15 0 chr5 92957585 92957653 -59579606 + (TTCTC)n Simple_repeat Simple_repeat 1 69 0 1 1294 390 21 0 0 chr5 92957875 92957922 -59579337 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1294 189 0 0 0 chr5 92957999 92958020 -59579239 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1 1294 1168 75 0 7 chr5 92958021 92958168 -59579091 - B1_Mm SINE Alu 0 147 2 1 1294 21 36 0 0 chr5 92958171 92958199 -59579060 + AT_rich Low_complexity Low_complexity 1 28 0 1 1294 462 36 0 0 chr5 92958280 92958336 -59578923 + (TTTTC)n Simple_repeat Simple_repeat 3 58 0 1 1294 510 162 25 56 chr5 92958336 92958532 -59578727 - RMER17C LTR ERVK -136 274 85 1 1294 1088 193 9 39 chr5 92958586 92958818 -59578441 + URR1B DNA MER1_type 1 225 0 1 1294 554 161 26 6 chr5 92959233 92959343 -59577916 + ORR1C1 LTR MaLR 2 119 -240 1 1294 1114 201 128 9 chr5 92959404 92959725 -59577534 + RMER16 LTR ERVK 175 533 0 1 1294 717 238 46 41 chr5 92959725 92959922 -59577337 + RMER16-int LTR ERVK 1 198 -5208 1 1294 344 328 7 4 chr5 92959937 92960127 -59577132 + RMER16-int LTR ERVK 194 466 -7751 1 1294 3039 61 24 3 chr5 92960685 92961062 -59576197 - IAPEY_LTR LTR ERVK 0 385 1 1 1294 412 329 61 53 chr5 92961105 92961639 -59575620 + RMER16-int LTR ERVK 945 1590 -1724 1 1294 821 281 68 26 chr5 92961689 92962051 -59575208 + RMER16-int LTR ERVK 1685 2036 -5545 1 1294 4922 220 56 32 chr5 92962028 92963650 -59573609 + RMER16-int LTR ERVK 1513 3971 -4246 1 1294 3930 87 17 0 chr5 92963628 92964156 -59573103 + RMER16-int LTR ERVK 2389 2925 -2481 1 1294 1212 48 0 0 chr5 92964160 92964306 -59572953 - B1_Mus2 SINE Alu 0 147 2 1 1294 3390 171 25 25 chr5 92964306 92964974 -59572285 + RMER16-int LTR ERVK 3205 3872 -1534 1 1294 6300 141 18 11 chr5 92965367 92966412 -59570847 + RMER16-int LTR ERVK 4025 5076 -330 1 1294 944 84 7 0 chr5 92966413 92966555 -59570704 + B2_Mm1t SINE B2 50 192 -1 1 1294 2544 80 3 6 chr5 92966555 92966883 -59570376 + RMER16-int LTR ERVK 5080 5406 0 1 1294 1598 146 57 50 chr5 92966883 92967283 -59569976 + RMER16 LTR ERVK 1 533 0 1 1294 1216 173 6 155 chr5 92967283 92967618 -59569641 + ORR1B2 LTR MaLR 83 367 0 1 1294 418 289 0 0 chr5 92967702 92967799 -59569460 + B1F1 SINE Alu 1 97 -52 1 1294 717 258 131 25 chr5 92967859 92968088 -59569171 + MER67C LTR ERV1 110 368 -343 1 1294 180 0 0 0 chr5 92968088 92968108 -59569151 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1294 717 258 131 25 chr5 92968108 92968160 -59569099 + MER67C LTR ERV1 369 420 -291 1 1294 370 230 40 10 chr5 92968218 92968319 -59568940 + MER67C LTR ERV1 541 644 -67 1 1294 255 297 0 0 chr5 92968748 92968812 -59568447 - MER5A1 DNA MER1_type -102 64 1 1 1294 565 131 26 53 chr5 92970285 92970297 -59566962 - PB1D9 SINE Alu -2 118 111 1 1294 564 56 0 0 chr5 92970297 92970369 -59566890 + (CTTTG)n Simple_repeat Simple_repeat 3 74 0 1 1294 565 131 26 53 chr5 92970369 92970469 -59566790 - PB1D9 SINE Alu -10 110 9 1 1294 189 0 0 0 chr5 92970846 92970867 -59566392 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1294 427 249 137 134 chr5 92971338 92971459 -59565800 - L1MB5 LINE L1 -38 6136 6047 1 1294 1212 54 0 0 chr5 92971459 92971606 -59565653 - B1_Mus2 SINE Alu 0 147 1 1 1294 427 249 137 134 chr5 92971606 92971776 -59565483 - L1MB5 LINE L1 -128 6046 5844 1 1294 2073 114 235 43 chr5 92971979 92972439 -59564820 - RLTR6_Mm LTR ERV1 -70 584 37 1 1294 68824 14 14 0 chr5 92972548 92980221 -59557038 - RLTR6-int LTR ERV1 0 7778 1 1 1294 2227 108 224 44 chr5 92980221 92980703 -59556556 - RLTR6_Mm LTR ERV1 -49 605 37 1 1294 238 284 37 0 chr5 92980888 92980969 -59556290 - L1MB5 LINE L1 -513 5667 5584 1 1294 364 157 24 24 chr5 92981202 92981287 -59555972 + CT-rich Low_complexity Low_complexity 2 86 0 1 1294 620 69 0 29 chr5 92981299 92981403 -59555856 - Lx4A LINE L1 -1 7057 6957 1 1294 264 59 0 0 chr5 92982193 92982227 -59555032 + (CTTTG)n Simple_repeat Simple_repeat 1 34 0 1 1294 1148 106 22 32 chr5 92982486 92982671 -59554588 - B2_Mm1t SINE B2 -9 184 2 1 1294 683 107 288 26 chr5 92982741 92982894 -59554365 + B2_Mm2 SINE B2 2 194 -1 1 1294 320 182 45 0 chr5 92982904 92982970 -59554289 - MLT1A1 LTR MaLR -4 404 336 1 1294 690 246 16 43 chr5 92983059 92983246 -59554013 + B3A SINE B2 17 198 0 1 1294 286 262 132 28 chr5 92985203 92985309 -59551950 - MTEa LTR MaLR -1 378 262 1 1294 441 219 7 146 chr5 92985628 92985669 -59551590 + B3A SINE B2 2 38 -160 1 1294 1393 75 32 0 chr5 92985669 92985855 -59551404 + B2_Mm2 SINE B2 3 194 -1 1 1294 441 219 7 146 chr5 92985855 92985957 -59551302 + B3A SINE B2 39 125 -73 1 1294 502 285 45 32 chr5 92986023 92986244 -59551015 - L1MD2 LINE L1 -495 5864 5641 1 1294 525 344 22 52 chr5 92986355 92986585 -59550674 + ID_B1 SINE B4 1 223 -1 1 1294 959 215 26 58 chr5 92986930 92987241 -59550018 - RLTR11B LTR ERVK -152 301 1 1 1294 344 77 0 19 chr5 92987436 92987489 -59549770 + (TTTTC)n Simple_repeat Simple_repeat 4 55 0 1 1294 357 109 0 0 chr5 92988259 92988314 -59548945 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1294 318 318 55 0 chr5 92988402 92988512 -59548747 + MIR SINE MIR 104 219 -43 1 1294 208 53 26 26 chr5 92988521 92988560 -59548699 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1294 280 330 0 0 chr5 92988630 92988718 -59548541 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1294 662 145 114 14 chr5 92988718 92988858 -59548401 - RSINE1 SINE B4 0 165 12 1 1294 428 238 24 32 chr5 92989228 92989354 -59547905 + RMER20B LTR ERVK 1 125 -502 1 1294 756 272 115 19 chr5 92989764 92990034 -59547225 - MTEa LTR MaLR -83 296 1 1 1294 1948 158 73 5 chr5 92990137 92990428 -59546831 + RMER4B LTR ERVK 13 332 -253 1 1294 345 47 0 0 chr5 92990428 92990471 -59546788 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 1 1294 1020 125 0 0 chr5 92990478 92990638 -59546621 + (GAA)n Simple_repeat Simple_repeat 3 162 0 1 1294 1948 142 344 14 chr5 92990638 92990817 -59546442 + RMER4B LTR ERVK 339 570 -15 1 1294 1502 242 73 57 chr5 92993141 92993579 -59543680 - Lx6 LINE L1 -27 7433 6989 1 1294 273 333 62 57 chr5 92993586 92993796 -59543463 - MLT1K LTR MaLR -190 405 195 1 1294 439 280 141 72 chr5 92993921 92994113 -59543146 - B4 SINE B4 -8 284 81 1 1294 1293 110 16 0 chr5 92994113 92994304 -59542955 + B2_Mm2 SINE B2 2 195 0 1 1294 439 280 141 72 chr5 92994304 92994373 -59542886 - B4 SINE B4 -212 80 5 1 1294 306 138 0 0 chr5 92994627 92994685 -59542574 + (T)n Simple_repeat Simple_repeat 1 58 0 1 1294 1206 40 0 13 chr5 92994689 92994839 -59542420 - B1_Mus1 SINE Alu 0 148 1 1 1294 189 0 0 0 chr5 92995188 92995209 -59542050 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1294 418 279 8 8 chr5 92995256 92995379 -59541880 - ID_B1 SINE B4 -18 206 84 1 1294 519 186 62 0 chr5 92995613 92995726 -59541533 - PB1D9 SINE Alu 0 120 1 1 1294 1469 64 16 11 chr5 92995975 92996164 -59541095 + B2_Mm2 SINE B2 2 191 -4 1 1294 21 57 0 0 chr5 92996568 92996603 -59540656 + AT_rich Low_complexity Low_complexity 1 35 0 1 1294 1206 62 0 0 chr5 92996878 92997024 -59540235 + B1_Mm SINE Alu 2 147 0 1 1294 576 288 90 57 chr5 92997115 92997450 -59539809 - MLT1D LTR MaLR -157 348 3 1 1294 561 250 91 120 chr5 92997642 92997983 -59539276 - ORR1E LTR MaLR -3 356 26 1 1294 1112 147 0 30 chr5 92998409 92998606 -59538653 - URR1B DNA MER1_type 0 225 35 1 1294 225 313 21 97 chr5 92998712 92998759 -59538500 + L2 LINE L2 2068 2108 -1311 1 1294 501 219 52 9 chr5 92998759 92998874 -59538385 - PB1D7 SINE Alu 0 120 1 1 1294 225 313 21 97 chr5 92998874 92998971 -59538288 + L2 LINE L2 2109 2201 -1218 1 1294 225 188 0 0 chr5 92998981 92999029 -59538230 - B1_Mur2 SINE Alu 0 149 102 1 1294 1230 224 67 29 chr5 92999336 92999681 -59537578 + ORR1C1 LTR MaLR 1 358 -20 1 1294 374 129 29 0 chr5 92999799 92999869 -59537390 + GA-rich Low_complexity Low_complexity 1 72 0 1 1294 505 254 20 86 chr5 93000002 93000153 -59537106 - B4A SINE B4 -150 142 2 1 1294 24 32 0 0 chr5 93000171 93000202 -59537057 + AT_rich Low_complexity Low_complexity 1 31 0 2 1294 483 331 94 7 chr5 93000202 93000351 -59536908 - RSINE1 SINE B4 -1 164 3 3 1294 244 365 212 14 chr5 93000483 93000828 -59536431 + L2b LINE L2 3013 3425 -1 4 1294 518 320 26 19 chr5 93000913 93001068 -59536191 + ID_B1 SINE B4 3 158 -66 5 1294 357 196 0 0 chr5 93001068 93001124 -59536135 + URR1B DNA MER1_type 1 56 -169 6 1294 1290 133 113 0 chr5 93001318 93001521 -59535738 + URR1B DNA MER1_type 1 225 0 6 1294 183 42 0 0 chr5 93001813 93001837 -59535422 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1294 1055 98 0 14 chr5 93001837 93001976 -59535283 - B1_Mus2 SINE Alu -8 139 1 8 1294 1032 271 70 41 chr5 93002014 93002228 -59535031 + L1MB7 LINE L1 5676 5883 -301 9 1294 1493 55 0 5 chr5 93002228 93002412 -59534847 - B2_Mm2 SINE B2 -12 183 1 1 1294 1032 271 70 41 chr5 93002412 93002609 -59534650 + L1MB7 LINE L1 5884 6099 -85 9 1294 852 220 51 23 chr5 93002646 93002860 -59534399 - ID_B1 SINE B4 -3 221 2 1 1294 661 104 20 14 chr5 93003119 93003265 -59533994 + (GA)n Simple_repeat Simple_repeat 1 147 0 1 1294 1240 87 16 37 chr5 93003785 93003976 -59533283 + B2_Mm2 SINE B2 1 187 -8 1 1294 572 223 158 0 chr5 93004566 93004705 -59532554 - RSINE1 SINE B4 -4 161 1 1 1294 1251 89 0 6 chr5 93005344 93005514 -59531745 + B2_Mm2 SINE B2 1 169 -26 1 1294 888 10 0 0 chr5 93005518 93005619 -59531640 + (GAA)n Simple_repeat Simple_repeat 2 102 0 1 1294 598 212 40 147 chr5 93005632 93005809 -59531450 + RSINE1 SINE B4 8 165 0 1 1294 269 151 19 0 chr5 93005833 93005886 -59531373 + GA-rich Low_complexity Low_complexity 1 54 0 1 1294 247 85 43 0 chr5 93006064 93006111 -59531148 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1294 905 241 126 8 chr5 93006123 93006362 -59530897 - B4 SINE B4 -25 267 1 2 1294 503 225 162 11 chr5 93006991 93007176 -59530083 + B3A SINE B2 1 200 -16 2 1294 1290 106 39 0 chr5 93008153 93008332 -59528927 + B2_Mm2 SINE B2 2 187 -8 2 1294 1227 55 0 0 chr5 93008340 93008486 -59528773 + B1_Mus2 SINE Alu 2 147 0 2 1294 391 240 55 216 chr5 93008491 93008746 -59528513 - B3 SINE B2 -1 215 2 2 1294 271 340 65 70 chr5 93009111 93009419 -59527840 + B4A SINE B4 6 292 0 2 1294 1508 283 112 35 chr5 93009972 93010705 -59526554 - L1MEc LINE L1 -5543 857 69 2 1294 238 106 48 5 chr5 93011024 93011075 -59526184 - L2b LINE L2 0 3387 3335 2 1294 480 310 70 70 chr5 93011737 93011952 -59525307 + MER20 DNA MER1_type 1 215 -4 2 1294 262 296 41 27 chr5 93011961 93012034 -59525225 - L2b LINE L2 -8 3367 3294 2 1294 353 283 0 21 chr5 93012382 93012449 -59524810 + B3A SINE B2 2 66 -132 3 1294 2142 96 83 6 chr5 93012449 93012817 -59524442 - RMER16 LTR ERVK 0 533 1 3 1294 480 248 7 110 chr5 93012817 93012953 -59524306 + B3A SINE B2 63 184 -14 3 1294 237 83 0 0 chr5 93012958 93012994 -59524265 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1294 605 255 128 21 chr5 93012996 93013184 -59524075 + B3 SINE B2 5 212 -4 3 1294 882 75 55 25 chr5 93013207 93013352 -59523907 + B1_Mus1 SINE Alu 2 149 -1 3 1294 339 335 98 17 chr5 93013887 93014060 -59523199 - MIRb SINE MIR -56 212 26 3 1294 632 221 56 14 chr5 93014646 93014788 -59522471 - B1_Mur2 SINE Alu 0 149 2 3 1294 407 286 0 18 chr5 93015705 93015819 -59521440 - PB1D10 SINE Alu -4 113 2 3 1294 23 0 0 0 chr5 93016181 93016204 -59521055 + AT_rich Low_complexity Low_complexity 1 23 0 3 1294 204 216 0 0 chr5 93017299 93017350 -59519909 + CT-rich Low_complexity Low_complexity 2 52 0 3 1294 581 291 7 34 chr5 93017363 93017509 -59519750 - ID_B1 SINE B4 -2 222 81 4 1294 198 103 0 0 chr5 93017891 93017920 -59519339 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1294 367 254 0 0 chr5 93017959 93018026 -59519233 - ID_B1 SINE B4 -67 157 91 4 1294 387 0 0 0 chr5 93018042 93018085 -59519174 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1294 411 299 85 70 chr5 93018089 93018290 -59518969 - B4A SINE B4 -86 206 3 4 1294 1364 148 128 30 chr5 93018349 93018672 -59518587 - RMER16 LTR ERVK 0 533 2 4 1294 342 296 66 50 chr5 93018925 93018947 -59518312 + B4 SINE B4 69 92 -200 4 1294 694 214 26 0 chr5 93018947 93019064 -59518195 + PB1D7 SINE Alu 1 120 0 4 1294 729 238 59 10 chr5 93019810 93020014 -59517245 - B3 SINE B2 -2 214 1 4 1294 355 330 0 0 chr5 93020056 93020171 -59517088 - PB1D10 SINE Alu 0 117 3 4 1294 366 80 0 0 chr5 93020527 93020577 -59516682 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1294 390 236 0 0 chr5 93020580 93020652 -59516607 - B3A SINE B2 -37 161 90 5 1294 510 17 0 0 chr5 93020659 93020718 -59516541 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1294 862 133 32 71 chr5 93020837 93020991 -59516268 - B1_Mur4 SINE Alu 0 150 3 5 1294 700 340 105 10 chr5 93021250 93021556 -59515703 - MER2 DNA MER2_type -1 344 10 5 1294 270 224 52 0 chr5 93021700 93021758 -59515501 + B1F SINE Alu 29 89 -60 5 1294 489 163 0 0 chr5 93021780 93021872 -59515387 + (ATG)n Simple_repeat Simple_repeat 2 93 0 5 1294 1169 55 104 6 chr5 93022089 93022253 -59515006 - MTB_Mm LTR MaLR 0 400 221 5 1294 446 215 0 8 chr5 93022366 93022497 -59514762 + CT-rich Low_complexity Low_complexity 2 131 0 5 1294 1863 71 0 0 chr5 93022519 93022757 -59514502 - MTB_Mm LTR MaLR -169 238 1 5 1294 1823 207 38 25 chr5 93022773 93023170 -59514089 - RLTR40 LTR ERVK -274 543 142 5 1294 838 161 53 7 chr5 93023318 93023468 -59513791 - RLTR40 LTR ERVK -660 157 1 5 1294 515 279 76 34 chr5 93023977 93024214 -59513045 + MIR SINE MIR 10 256 -6 6 1294 361 276 135 0 chr5 93024631 93024787 -59512472 - MER63D DNA AcHobo -765 296 120 6 1294 708 299 66 33 chr5 93025782 93026055 -59511204 + MER21B LTR ERV1 562 843 -20 6 1294 203 231 0 0 chr5 93026675 93026714 -59510545 + C-rich Low_complexity Low_complexity 1 39 0 6 1294 8106 40 11 0 chr5 93026757 93027954 -59509305 - L1Md_F2 LINE L1 0 6582 5369 6 1294 1297 51 9 4 chr5 93027950 93028136 -59509123 + L1Md_F2 LINE L1 5237 5418 -459 6 1294 569 280 128 43 chr5 93028800 93029035 -59508224 - MER21B LTR ERV1 -108 755 501 6 1294 28 22 0 22 chr5 93029569 93029600 -59507659 + AT_rich Low_complexity Low_complexity 1 31 0 6 1294 1161 56 21 0 chr5 93029600 93029743 -59507516 + B1_Mm SINE Alu 2 147 0 6 1294 28 22 0 22 chr5 93029743 93029757 -59507502 + AT_rich Low_complexity Low_complexity 1 14 0 6 1294 1144 103 33 44 chr5 93029757 93029939 -59507320 - B2_Mm2 SINE B2 -14 181 2 6 1294 247 227 56 22 chr5 93030080 93030170 -59507089 - Lx8 LINE L1 -33 7440 7348 7 1294 275 65 22 0 chr5 93030184 93030230 -59507029 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 7 1294 1883 256 59 42 chr5 93030243 93030856 -59506403 - Lx7 LINE L1 -282 7414 6792 7 1294 21 0 0 0 chr5 93030872 93030893 -59506366 + AT_rich Low_complexity Low_complexity 1 21 0 7 1294 1275 61 0 0 chr5 93031373 93031538 -59505721 + (GA)n Simple_repeat Simple_repeat 1 165 0 7 1294 280 210 238 10 chr5 93031545 93031646 -59505613 + B1F SINE Alu 21 144 -5 7 1294 214 252 9 83 chr5 93031885 93031993 -59505266 + (CGGGG)n Simple_repeat Simple_repeat 5 104 0 7 1294 339 284 74 0 chr5 93035867 93035962 -59501297 - ID_B1 SINE B4 -8 216 115 7 1294 27 0 0 0 chr5 93036846 93036873 -59500386 + AT_rich Low_complexity Low_complexity 1 27 0 7 1294 24 0 0 0 chr5 93037216 93037240 -59500019 + AT_rich Low_complexity Low_complexity 1 24 0 7 1294 2501 52 23 0 chr5 93037919 93038227 -59499032 - L1_Mus1 LINE L1 -1 6566 6252 8 1294 183 80 0 0 chr5 93038484 93038509 -59498750 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1294 423 138 15 0 chr5 93038899 93038964 -59498295 - BC1_Mm scRNA scRNA -81 71 6 8 1294 29 0 0 0 chr5 93040364 93040393 -59496866 + AT_rich Low_complexity Low_complexity 1 29 0 8 1294 5326 55 1 1 chr5 93040776 93041433 -59495826 + L1Md_F2 LINE L1 5926 6582 0 8 1294 572 332 130 53 chr5 93041787 93042293 -59494966 + MLT2B3 LTR ERVL 1 545 -9 8 1294 385 349 119 40 chr5 93042329 93042532 -59494727 + L1MEg LINE L1 418 639 -5445 8 1294 1362 55 77 0 chr5 93042532 93042713 -59494546 + B2_Mm2 SINE B2 1 195 0 8 1294 385 349 119 40 chr5 93042713 93042736 -59494523 + L1MEg LINE L1 640 662 -5422 8 1294 212 184 0 0 chr5 93042736 93042774 -59494485 + A-rich Low_complexity Low_complexity 1 38 0 8 1294 386 268 130 40 chr5 93042952 93043205 -59494054 + L1MEg LINE L1 1251 1526 -4558 8 1294 565 205 16 33 chr5 93043253 93043374 -59493885 + PB1D9 SINE Alu 1 119 -1 8 1294 977 191 15 31 chr5 93043402 93043569 -59493690 + MTD LTR MaLR 10 179 -240 9 1294 2222 87 60 17 chr5 93043569 93043921 -59493338 + IAPLTR1_Mm LTR ERVK 1 367 0 9 1294 977 191 15 31 chr5 93043921 93043948 -59493311 + MTD LTR MaLR 180 201 -218 9 1294 972 101 14 0 chr5 93043948 93044086 -59493173 + IAPEz-int LTR ERVK 57 196 -6285 9 1294 54521 29 21 8 chr5 93044057 93050445 -59486814 + IAPEz-int LTR ERVK 67 6479 -2 9 1294 2222 87 60 17 chr5 93050447 93050799 -59486460 + IAPLTR1_Mm LTR ERVK 1 367 0 9 1294 855 219 160 5 chr5 93050803 93051009 -59486250 + MTD LTR MaLR 179 416 -3 9 1294 844 278 66 27 chr5 93051198 93051457 -59485802 + B4 SINE B4 2 270 -22 9 1294 516 126 0 0 chr5 93051463 93051550 -59485709 + (CA)n Simple_repeat Simple_repeat 1 87 0 9 1294 300 335 137 37 chr5 93051955 93052225 -59485034 - L2a LINE L2 -1 3425 3129 9 1294 568 216 39 16 chr5 93053086 93053213 -59484046 - ID_B1 SINE B4 -9 215 86 9 1294 21 36 0 0 chr5 93053249 93053277 -59483982 + AT_rich Low_complexity Low_complexity 1 28 0 9 1294 456 237 11 0 chr5 93053349 93053442 -59483817 + PB1D10 SINE Alu 1 94 -23 9 1294 310 343 9 0 chr5 93053442 93053454 -59483805 + ID_B1 SINE B4 82 187 -37 9 1294 505 206 27 27 chr5 93053871 93053981 -59483278 + RSINE1 SINE B4 56 165 0 1 1294 286 319 9 17 chr5 93054017 93054132 -59483127 + Charlie1b DNA MER1_type 124 237 -286 1 1294 330 77 19 0 chr5 93054162 93054214 -59483045 - B2_Mm1t SINE B2 -9 184 132 1 1294 1111 102 0 0 chr5 93054246 93054393 -59482866 - B2_Mm2 SINE B2 -47 148 2 1 1294 21 0 0 0 chr5 93054401 93054422 -59482837 + AT_rich Low_complexity Low_complexity 1 21 0 1 1294 251 356 141 0 chr5 93054569 93054760 -59482499 + MIR SINE MIR 2 219 -43 1 1294 221 291 62 12 chr5 93054930 93055010 -59482249 - L2b LINE L2 0 3375 3292 1 1294 2692 133 15 0 chr5 93055021 93055433 -59481826 - MTC LTR MaLR -3 418 1 1 1294 934 219 118 21 chr5 93055488 93055726 -59481533 - Lx6 LINE L1 -26 7434 7174 1 1294 1688 143 84 23 chr5 93055730 93056152 -59481107 + RMER17C LTR ERVK 16 439 -519 1 1294 777 162 49 0 chr5 93056556 93056698 -59480561 + B1_Mur1 SINE Alu 1 149 0 1 1294 280 281 90 0 chr5 93057116 93057205 -59480054 + ID_B1 SINE B4 1 97 -127 1 1294 1199 213 100 7 chr5 93057383 93057672 -59479587 - MTD LTR MaLR -103 316 1 1 1294 545 217 101 0 chr5 93059249 93059378 -59477881 - B1F2 SINE Alu -1 148 7 1 1294 399 265 68 0 chr5 93059275 93059392 -59477867 - ID_B1 SINE B4 -26 198 74 1 1294 423 185 0 47 chr5 93059723 93059808 -59477451 + PB1D10 SINE Alu 6 86 -31 1 1294 468 0 0 0 chr5 93059817 93059869 -59477390 + (CAAAA)n Simple_repeat Simple_repeat 1 52 0 1 1294 513 140 178 0 chr5 93059873 93059980 -59477279 + B1_Mus2 SINE Alu 9 134 -13 1 1294 1423 75 5 16 chr5 93060439 93060628 -59476631 - B2_Mm1t SINE B2 -5 188 2 1 1294 533 167 157 9 chr5 93060854 93060969 -59476290 + RLTR20D LTR ERVK 178 309 -259 1 161 399 283 19 0 chr5 93061028 93061134 -59476125 + RLTR20D LTR ERVK 461 568 0 1 1295 1210 48 7 0 chr5 93061931 93062078 -59475181 + B1_Mus1 SINE Alu 1 148 0 1 1295 258 32 0 0 chr5 93062078 93062109 -59475150 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 1 1295 709 251 127 8 chr5 93062878 93063123 -59474136 + B4A SINE B4 1 274 -18 1 1295 275 185 0 84 chr5 93063637 93063708 -59473551 + ID_B1 SINE B4 122 186 -38 1 1295 2302 107 11 38 chr5 93064143 93064512 -59472747 + RLTR15 LTR ERVK 1 359 0 1 1295 1151 137 85 28 chr5 93064628 93064839 -59472420 + URR1B DNA MER1_type 1 223 -2 1 1295 2265 79 48 0 chr5 93065562 93065877 -59471382 - Lx4A LINE L1 -1159 4718 4389 1 1295 9848 102 26 7 chr5 93065873 93068165 -59469094 + Lx4A LINE L1 4712 7058 0 1 1295 180 0 0 0 chr5 93068610 93068630 -59468629 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1295 300 250 108 46 chr5 93069044 93069174 -59468085 + Tigger9b DNA MER2_type 1 138 -486 1 1295 629 274 30 0 chr5 93069185 93069353 -59467906 + B3 SINE B2 10 182 -34 1 1295 243 146 0 0 chr5 93069353 93069394 -59467865 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1295 238 175 18 0 chr5 93069394 93069451 -59467808 + B3 SINE B2 155 212 -4 1 1295 26 0 0 0 chr5 93069454 93069480 -59467779 + AT_rich Low_complexity Low_complexity 1 26 0 1 1295 3378 20 13 3 chr5 93069590 93069982 -59467277 - MTA_Mm LTR MaLR 0 396 1 1 1295 1530 53 16 0 chr5 93070349 93070536 -59466723 - B2_Mm2 SINE B2 -5 190 1 1 1295 270 0 0 0 chr5 93070891 93070921 -59466338 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 1 1295 966 210 5 20 chr5 93070922 93071121 -59466138 - B3 SINE B2 -17 199 4 1 1295 273 346 46 1 chr5 93071410 93071537 -59465722 + B1_Mur1 SINE Alu 2 133 -16 1 1295 180 85 41 41 chr5 93071575 93071624 -59465635 + (CAAA)n Simple_repeat Simple_repeat 3 51 0 1 1295 327 49 0 0 chr5 93071686 93071727 -59465532 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1295 572 258 173 24 chr5 93071757 93071838 -59465421 + B4A SINE B4 1 85 -207 1 1295 360 0 0 0 chr5 93071838 93071878 -59465381 + (CAA)n Simple_repeat Simple_repeat 3 42 0 1 1295 572 258 173 24 chr5 93071878 93072050 -59465209 + B4A SINE B4 86 292 0 1 1295 341 109 16 0 chr5 93072422 93072486 -59464773 + L1Md_F2 LINE L1 6514 6578 -4 1 1295 228 280 20 0 chr5 93073032 93073082 -59464177 - ID4_ SINE ID -19 64 14 1 1295 567 66 0 0 chr5 93073086 93073162 -59464097 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 1 1295 956 269 61 31 chr5 93073189 93073515 -59463744 + Lx8 LINE L1 7131 7466 -7 1 1295 763 174 22 0 chr5 93073992 93074130 -59463129 - B1_Mur2 SINE Alu -2 147 7 1 1295 408 345 58 64 chr5 93074846 93075190 -59462069 - ORR1D2 LTR MaLR -23 347 6 1 1295 448 254 0 48 chr5 93075258 93075444 -59461815 + G-rich Low_complexity Low_complexity 2 178 0 1 1295 428 273 11 38 chr5 93075467 93075705 -59461554 + G-rich Low_complexity Low_complexity 1 231 0 1 1295 625 290 109 22 chr5 93075730 93076005 -59461254 + MER68 LTR ERVL 56 354 -209 1 1295 228 362 70 16 chr5 93076101 93076162 -59461097 + ORR1D2 LTR MaLR 25 86 -284 1 1295 1031 82 7 0 chr5 93076162 93076309 -59460950 + (TTTC)n Simple_repeat Simple_repeat 1 148 0 1 1295 1125 59 0 0 chr5 93076309 93076444 -59460815 - B1_Mus1 SINE Alu -13 135 1 1 1295 228 362 70 16 chr5 93076444 93076510 -59460749 + ORR1D2 LTR MaLR 87 159 -211 1 1295 348 169 31 0 chr5 93076516 93076581 -59460678 + B1_Mur2 SINE Alu 82 148 -1 1 1295 1289 113 5 5 chr5 93076749 93076935 -59460324 + B2_Mm2 SINE B2 1 186 -9 1 1295 1003 76 14 0 chr5 93076935 93077080 -59460179 - B2_Mm2 SINE B2 -47 148 2 1 1295 228 67 0 0 chr5 93078180 93078210 -59459049 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1 1295 366 23 0 0 chr5 93078309 93078352 -59458907 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1295 966 57 224 25 chr5 93078367 93078528 -59458731 + B2_Mm2 SINE B2 2 194 -1 1 1295 635 159 0 6 chr5 93078530 93078645 -59458614 + GA-rich Low_complexity Low_complexity 3 117 0 1 1295 1038 100 0 0 chr5 93078645 93078825 -59458434 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1295 635 159 0 6 chr5 93078825 93078880 -59458379 + polypurine Low_complexity Low_complexity 118 172 0 1 1295 756 185 0 29 chr5 93080176 93080315 -59456944 + B1_Mur2 SINE Alu 7 141 -8 1 1295 306 0 0 0 chr5 93080315 93080349 -59456910 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1295 444 19 0 0 chr5 93080349 93080402 -59456857 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1295 347 0 0 23 chr5 93081659 93081703 -59455556 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1295 23 33 0 0 chr5 93082054 93082084 -59455175 + AT_rich Low_complexity Low_complexity 1 30 0 1 1295 183 80 0 0 chr5 93082354 93082379 -59454880 + (AGGGGG)n Simple_repeat Simple_repeat 5 29 0 1 1295 482 288 35 86 chr5 93083412 93083644 -59453615 - ID_B1 SINE B4 -2 222 3 1 1295 354 247 0 0 chr5 93084038 93084119 -59453140 - PB1D10 SINE Alu -6 111 31 1 1295 886 165 72 22 chr5 93084165 93084345 -59452914 + B2_Mm2 SINE B2 2 190 -5 1 1295 1187 62 0 0 chr5 93084365 93084509 -59452750 + B1_Mus2 SINE Alu 1 144 -3 1 1295 206 32 0 31 chr5 93084509 93084541 -59452718 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1295 1167 109 42 0 chr5 93085742 93085934 -59451325 - URR1A DNA MER1_type 0 226 27 1 1295 457 265 0 57 chr5 93086198 93086322 -59450937 - B3A SINE B2 -81 117 1 1 1295 180 77 0 0 chr5 93087273 93087299 -59449960 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1295 222 171 0 0 chr5 93087294 93087335 -59449924 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1295 260 346 20 74 chr5 93087393 93087596 -59449663 + B3A SINE B2 1 192 -6 1 1295 309 322 9 0 chr5 93087664 93087779 -59449480 + (TA)n Simple_repeat Simple_repeat 1 116 0 1 1295 603 291 57 53 chr5 93087930 93088177 -59449082 + RLTR18 LTR ERVK 63 310 -306 1 1295 772 297 80 7 chr5 93088220 93088522 -59448737 + RLTR18B LTR ERVK 186 509 -3 1 1295 416 257 0 42 chr5 93088525 93088643 -59448616 - B3 SINE B2 -99 117 5 1 1295 2132 101 6 0 chr5 93088959 93089275 -59447984 + ORR1A3 LTR MaLR 1 318 -8 1 1295 268 294 11 45 chr5 93089271 93089360 -59447899 - ID_B1 SINE B4 -60 164 79 1 1295 714 188 18 0 chr5 93089372 93089537 -59447722 + CT-rich Low_complexity Low_complexity 1 168 0 1 1295 771 199 0 40 chr5 93089538 93089690 -59447569 - B1_Mur2 SINE Alu -2 147 2 1 1295 448 287 19 0 chr5 93089785 93089893 -59447366 + PB1 SINE Alu 6 115 -12 1 1295 196 319 75 32 chr5 93090025 93090119 -59447140 - MIRm SINE MIR -145 131 34 1 1295 571 221 61 6 chr5 93090256 93090420 -59446839 + MER31B LTR ERV1 280 452 -14 1 1295 574 228 8 13 chr5 93091353 93091483 -59445776 - B1F SINE Alu -15 134 10 1 1295 217 275 43 0 chr5 93091514 93091583 -59445676 + ID2 SINE ID 2 73 -10 1 1295 411 21 0 0 chr5 93091587 93091635 -59445624 + (GGA)n Simple_repeat Simple_repeat 1 48 0 1 1295 213 39 0 0 chr5 93091898 93091924 -59445335 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1295 953 217 29 14 chr5 93092083 93092293 -59444966 + B3 SINE B2 4 216 0 1 1295 333 293 42 63 chr5 93092607 93092749 -59444510 + HAL1 LINE L1 807 945 -1562 1 1295 314 188 0 80 chr5 93092815 93092890 -59444369 + B1_Mus2 SINE Alu 42 110 -37 1 1295 282 143 0 0 chr5 93092893 93092942 -59444317 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 1 1295 504 135 89 50 chr5 93093113 93093214 -59444045 + B1_Mur4 SINE Alu 39 143 -7 1 1295 269 374 0 0 chr5 93093265 93093364 -59443895 + PB1D10 SINE Alu 2 100 -17 1 1295 290 131 243 14 chr5 93093703 93093773 -59443486 + RMER20A LTR ERVK 1 86 -430 1 1295 207 0 0 0 chr5 93093779 93093802 -59443457 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1295 736 70 28 14 chr5 93093816 93093960 -59443299 - RMER17B LTR ERVK -505 453 308 2 1295 1475 199 71 62 chr5 93093957 93094396 -59442863 + RMER20A LTR ERVK 74 516 0 1 1295 363 44 0 0 chr5 93094557 93094602 -59442657 + (TCCC)n Simple_repeat Simple_repeat 3 47 0 2 1295 440 254 17 17 chr5 93094610 93094726 -59442533 - RSINE1 SINE B4 -47 118 3 2 1295 263 265 67 29 chr5 93094788 93094893 -59442366 + L2c LINE L2 3227 3335 -52 2 1295 182 312 47 0 chr5 93095051 93095115 -59442144 - L2b LINE L2 -221 3154 3088 2 1295 420 240 135 13 chr5 93095420 93095576 -59441683 + Charlie13b DNA Charlie 172 346 -166 2 1295 1502 28 22 11 chr5 93096496 93096678 -59440581 + B2_Mm1t SINE B2 2 185 -8 2 1295 259 296 15 44 chr5 93096813 93096945 -59440314 + MER5A1 DNA MER1_type 1 127 -51 2 1295 1021 215 24 0 chr5 93097085 93097290 -59439969 + B3 SINE B2 1 210 -6 2 1295 490 266 9 9 chr5 93098073 93098187 -59439072 - B1_Mur1 SINE Alu -34 115 2 2 1295 222 37 0 0 chr5 93099818 93099845 -59437414 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1295 328 191 29 136 chr5 93101875 93101978 -59435281 - RSINE1 SINE B4 0 165 74 2 1295 1024 203 14 37 chr5 93102412 93102627 -59434632 + B3 SINE B2 1 210 -6 2 1295 684 125 113 38 chr5 93102824 93102957 -59434302 - B1_Mur1 SINE Alu -1 148 6 2 1295 854 182 80 10 chr5 93103156 93103356 -59433903 + B3 SINE B2 1 214 -2 2 1295 266 329 6 30 chr5 93104292 93104458 -59432801 + G-rich Low_complexity Low_complexity 3 164 0 2 1295 424 327 66 6 chr5 93105687 93105853 -59431406 + MT2A LTR ERVL 245 420 -113 2 1295 288 278 13 57 chr5 93105921 93106071 -59431188 - B4 SINE B4 -28 137 2 2 1295 570 203 12 15 chr5 93106071 93106241 -59431018 - B4A SINE B4 -65 227 26 2 1295 446 270 183 7 chr5 93106439 93106592 -59430667 - B3A SINE B2 -16 182 3 2 1295 210 217 0 21 chr5 93106666 93106713 -59430546 + (TA)n Simple_repeat Simple_repeat 2 47 0 2 1295 187 75 0 91 chr5 93106786 93106830 -59430429 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1295 491 311 0 0 chr5 93106935 93107067 -59430192 - RSINE1 SINE B4 -31 134 3 2 1295 206 111 43 22 chr5 93107119 93107165 -59430094 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2 1295 238 268 14 27 chr5 93107233 93107306 -59429953 - L1MB3 LINE L1 -189 5994 5923 2 1295 932 240 10 0 chr5 93107336 93107544 -59429715 - B3 SINE B2 -6 210 1 2 1295 780 193 7 7 chr5 93107624 93107765 -59429494 - ID_B1 SINE B4 0 224 84 2 1295 21 0 0 0 chr5 93107779 93107800 -59429459 + AT_rich Low_complexity Low_complexity 1 21 0 2 1295 429 250 43 14 chr5 93107883 93108021 -59429238 - B1F SINE Alu -7 142 1 2 1295 599 240 0 0 chr5 93108743 93108864 -59428395 + B1_Mur1 SINE Alu 27 147 -2 2 1295 26 0 0 0 chr5 93108866 93108892 -59428367 + AT_rich Low_complexity Low_complexity 1 26 0 2 1295 888 154 0 0 chr5 93109163 93109319 -59427940 + (CA)n Simple_repeat Simple_repeat 2 157 0 2 1295 815 191 7 0 chr5 93109319 93109460 -59427799 + ID_B1 SINE B4 83 224 0 2 1295 465 195 14 2 chr5 93109540 93109646 -59427613 + B3A SINE B2 1 111 -84 2 1295 396 0 0 0 chr5 93109940 93109984 -59427275 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1295 257 302 163 47 chr5 93110006 93110239 -59427020 - B4 SINE B4 -18 274 15 2 1295 280 272 132 28 chr5 93110251 93110357 -59426902 - PB1D10 SINE Alu 0 117 1 2 1295 299 325 42 96 chr5 93110828 93111076 -59426183 - B4A SINE B4 -14 278 40 2 1295 204 40 0 0 chr5 93111076 93111101 -59426158 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1295 299 304 0 71 chr5 93111101 93111142 -59426117 - B4A SINE B4 -251 41 3 2 1295 200 333 104 0 chr5 93111680 93111776 -59425483 - MER5A DNA MER1_type -7 182 77 2 1295 252 0 0 0 chr5 93112290 93112318 -59424941 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1295 348 83 0 0 chr5 93112937 93112985 -59424274 + (A)n Simple_repeat Simple_repeat 1 48 0 2 1295 191 36 36 0 chr5 93113349 93113377 -59423882 + (ATGGTG)n Simple_repeat Simple_repeat 1 29 0 2 1295 198 0 0 0 chr5 93113468 93113490 -59423769 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 2 1295 270 0 0 0 chr5 93113658 93113688 -59423571 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 1295 997 113 47 0 chr5 93113689 93113839 -59423420 - B2_Mm2 SINE B2 -35 160 4 2 1295 189 0 0 0 chr5 93113843 93113864 -59423395 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1295 369 0 0 0 chr5 93114131 93114172 -59423087 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1295 241 366 59 101 chr5 93114300 93114537 -59422722 - LTR86B2 LTR ERVL -72 415 189 2 1295 345 346 77 94 chr5 93114397 93114848 -59422411 - MLT1L LTR MaLR -65 447 5 2 1295 520 278 126 96 chr5 93115156 93115490 -59421769 - ORR1E LTR MaLR -15 344 1 2 1295 359 244 54 54 chr5 93115742 93115872 -59421387 - MER3 DNA MER1_type 0 209 80 2 1295 644 312 99 78 chr5 93116349 93116967 -59420292 - MLT1D LTR MaLR 0 627 1 2 1295 1049 186 81 24 chr5 93117032 93117241 -59420018 - URR1A DNA MER1_type -5 221 1 2 1295 22 0 0 0 chr5 93117668 93117690 -59419569 + AT_rich Low_complexity Low_complexity 1 22 0 2 1295 450 266 32 8 chr5 93118014 93118139 -59419120 - RMER5 LTR ERV1 0 534 407 2 1295 216 0 0 0 chr5 93118371 93118395 -59418864 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2 1295 1172 15 0 8 chr5 93118395 93118529 -59418730 - B1_Mm SINE Alu -13 134 2 2 1295 706 165 90 8 chr5 93118625 93118747 -59418512 - URR1A DNA MER1_type -94 132 1 2 1295 643 207 0 0 chr5 93119213 93119324 -59417935 - ID_B1 SINE B4 -9 215 105 2 1295 299 260 0 38 chr5 93119305 93119385 -59417874 - PB1D10 SINE Alu -34 83 7 2 1295 229 306 0 0 chr5 93119331 93119393 -59417866 - ID_B1 SINE B4 -83 141 80 2 1295 214 159 0 43 chr5 93119413 93119459 -59417800 + CT-rich Low_complexity Low_complexity 2 45 0 2 1295 291 214 0 0 chr5 93119863 93119933 -59417326 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 1295 494 310 34 38 chr5 93120123 93120305 -59416954 + ID_B1 SINE B4 38 220 -72 2 1295 920 265 9 14 chr5 93120360 93120582 -59416677 + ID_B1 SINE B4 3 223 -1 2 1295 294 221 60 5 chr5 93120640 93120867 -59416392 + (TA)n Simple_repeat Simple_repeat 1 239 0 2 1295 221 343 0 14 chr5 93121861 93121932 -59415327 + MIRc SINE MIR 80 149 -119 2 1295 696 295 61 15 chr5 93122434 93122696 -59414563 + B4A SINE B4 1 274 -18 2 1295 27 0 0 0 chr5 93122744 93122771 -59414488 + AT_rich Low_complexity Low_complexity 1 27 0 2 1295 653 203 152 21 chr5 93122867 93123058 -59414201 + B3 SINE B2 1 216 0 2 1295 325 239 0 15 chr5 93123246 93123314 -59413945 - ID4 SINE ID -16 67 1 2 1295 435 38 0 0 chr5 93123387 93123440 -59413819 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1295 565 303 213 18 chr5 93124329 93124662 -59412597 + LTR16C LTR ERVL 69 466 -23 2 1295 2312 167 26 97 chr5 93124663 93125490 -59411769 + RMER6A LTR ERVK 47 755 -1 2 1295 338 236 0 14 chr5 93125642 93125715 -59411544 + B3A SINE B2 2 73 -125 2 1295 1804 130 32 0 chr5 93126070 93126347 -59410912 + ORR1A3 LTR MaLR 1 286 -40 2 1295 829 54 62 9 chr5 93126347 93126460 -59410799 + B2_Mm2 SINE B2 2 120 -75 2 1295 585 178 0 0 chr5 93126613 93126714 -59410545 + B3A SINE B2 1 101 -97 2 1295 585 241 144 26 chr5 93126859 93127123 -59410136 + L1MB7 LINE L1 5713 6007 -177 2 1295 243 0 0 0 chr5 93127145 93127172 -59410087 + (CCTA)n Simple_repeat Simple_repeat 4 30 0 2 1295 468 0 0 0 chr5 93127181 93127233 -59410026 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 2 1295 401 284 107 119 chr5 93128247 93128491 -59408768 + B4 SINE B4 40 280 -12 2 1295 248 321 0 0 chr5 93128463 93128519 -59408740 + RSINE1 SINE B4 108 163 -2 2 1295 213 94 0 0 chr5 93128520 93128552 -59408707 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1295 294 239 28 0 chr5 93128634 93128705 -59408554 + ID4 SINE ID 2 74 -9 2 1295 333 0 0 0 chr5 93128914 93128951 -59408308 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2 1295 632 200 13 46 chr5 93128967 93129119 -59408140 - B1_Mur4 SINE Alu -2 148 2 2 1295 349 257 57 9 chr5 93129130 93129226 -59408033 - MTEa LTR MaLR -14 365 264 2 1295 266 0 29 0 chr5 93129226 93129260 -59407999 + (TGG)n Simple_repeat Simple_repeat 2 36 0 2 1295 420 295 36 0 chr5 93129344 93129456 -59407803 - MLT1B LTR MaLR -236 154 39 2 1295 1108 170 22 6 chr5 93129572 93129755 -59407504 + B3 SINE B2 1 186 -30 2 1295 3065 3 0 0 chr5 93129834 93130169 -59407090 - L1Md_T LINE L1 0 6582 6248 2 1295 221 115 24 71 chr5 93130206 93130290 -59406969 + (CAGA)n Simple_repeat Simple_repeat 1 80 0 2 1295 805 48 0 0 chr5 93130376 93130479 -59406780 - B1_Mus2 SINE Alu 0 147 45 2 1295 522 31 0 0 chr5 93131150 93131214 -59406045 + (GA)n Simple_repeat Simple_repeat 2 65 0 2 1295 296 209 0 15 chr5 93131389 93131457 -59405802 - B1_Mus1 SINE Alu -81 67 1 2 1295 251 288 110 46 chr5 93131536 93131645 -59405614 - PB1D10 SINE Alu 0 117 2 2 1295 193 371 0 0 chr5 93131645 93131715 -59405544 - MIRc SINE MIR -114 154 85 2 1295 229 361 73 40 chr5 93132175 93132299 -59404960 - MIRb SINE MIR -23 245 118 2 1295 248 273 51 13 chr5 93132337 93132415 -59404844 + MIRc SINE MIR 156 236 -32 3 1295 659 232 21 27 chr5 93133126 93133290 -59403969 + B3A SINE B2 4 176 -19 3 1295 218 33 117 0 chr5 93133303 93133363 -59403896 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 1295 21 71 0 0 chr5 93133417 93133459 -59403800 + AT_rich Low_complexity Low_complexity 1 42 0 3 1295 457 217 23 13 chr5 93133507 93133603 -59403656 - RSINE1 SINE B4 -62 103 6 3 1295 220 292 0 0 chr5 93133678 93133726 -59403533 + B4A SINE B4 94 141 -151 3 1295 201 295 0 0 chr5 93133993 93134054 -59403205 + (TG)n Simple_repeat Simple_repeat 2 62 0 3 1295 317 289 0 38 chr5 93134057 93134136 -59403123 - B4 SINE B4 -2 290 215 3 1295 586 148 5 86 chr5 93134150 93134539 -59402720 + CT-rich Low_complexity Low_complexity 1 357 0 3 1295 709 240 98 0 chr5 93134543 93134747 -59402512 - ID_B1 SINE B4 0 224 1 3 1295 488 275 146 16 chr5 93134752 93134944 -59402315 - B4 SINE B4 -74 218 2 3 1295 341 229 82 32 chr5 93135081 93135239 -59402020 - Lx9 LINE L1 -6 7638 7473 3 1295 683 153 9 0 chr5 93135265 93135376 -59401883 + Lx9 LINE L1 7300 7411 -233 3 1295 423 0 0 0 chr5 93136323 93136370 -59400889 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 3 1295 288 311 83 28 chr5 93136442 93136551 -59400708 - PB1D10 SINE Alu -2 115 1 3 1295 474 250 13 10 chr5 93136773 93136887 -59400372 + PB1D10 SINE Alu 1 124 -3 3 1295 31 0 0 0 chr5 93137708 93137739 -59399520 + AT_rich Low_complexity Low_complexity 1 31 0 3 1295 631 129 0 0 chr5 93137747 93137840 -59399419 - B3 SINE B2 -123 93 1 3 1295 260 72 0 45 chr5 93138561 93138605 -59398654 + (TCCCC)n Simple_repeat Simple_repeat 3 44 0 3 1295 425 164 0 0 chr5 93138660 93138733 -59398526 + B1_Mur4 SINE Alu 77 149 -1 3 1295 462 197 8 16 chr5 93138733 93138857 -59398402 + GA-rich Low_complexity Low_complexity 2 124 0 3 1295 709 256 18 68 chr5 93138963 93139185 -59398074 - B3A SINE B2 -1 215 5 3 1295 1319 76 29 0 chr5 93139579 93139750 -59397509 - B2_Mm2 SINE B2 -19 176 1 3 1295 236 267 117 0 chr5 93140031 93140091 -59397168 + Tigger12A DNA MER2_type 725 791 0 3 1295 626 311 104 40 chr5 93140186 93140706 -59396553 - L1MB7 LINE L1 -6 6178 5626 3 1295 310 256 0 71 chr5 93142464 93142548 -59394711 - ID4 SINE ID 0 83 6 3 1295 290 215 13 0 chr5 93142806 93142885 -59394374 + (TATG)n Simple_repeat Simple_repeat 4 83 0 3 1295 924 278 14 20 chr5 93142896 93143190 -59394069 - B4A SINE B4 0 292 1 3 1295 517 235 66 36 chr5 93143379 93143516 -59393743 - B1_Mur2 SINE Alu -8 141 1 3 1295 703 219 14 7 chr5 93143534 93143681 -59393578 - B1_Mur1 SINE Alu 0 149 2 3 1295 387 0 0 0 chr5 93143740 93143783 -59393476 + (TTA)n Simple_repeat Simple_repeat 3 45 0 3 1295 1172 90 66 0 chr5 93143783 93143950 -59393309 - L1_Mus2 LINE L1 -11 6555 6378 3 1295 696 111 3 0 chr5 93144067 93144175 -59393084 + B2_Mm2 SINE B2 2 112 -104 3 1295 611 246 7 14 chr5 93144741 93144885 -59392374 - B1F SINE Alu 0 149 7 3 1295 277 319 44 89 chr5 93144747 93144905 -59392354 - B4A SINE B4 -71 221 71 3 1295 459 281 50 45 chr5 93145038 93145239 -59392020 + B3 SINE B2 1 202 -14 3 1295 459 0 0 0 chr5 93145244 93145295 -59391964 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1295 715 151 7 14 chr5 93145295 93145436 -59391823 + GA-rich Low_complexity Low_complexity 3 142 0 3 1295 419 257 12 12 chr5 93145457 93145630 -59391629 + GA-rich Low_complexity Low_complexity 6 178 0 3 1295 24 53 0 0 chr5 93145978 93146016 -59391243 + AT_rich Low_complexity Low_complexity 1 38 0 3 1295 239 240 60 40 chr5 93146026 93146126 -59391133 - Lx8 LINE L1 -8 7465 7364 3 1295 513 0 0 0 chr5 93146150 93146207 -59391052 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 3 1295 349 312 9 44 chr5 93146219 93146333 -59390926 - RMER15 LTR ERVL -108 467 358 3 1295 834 291 5 14 chr5 93146352 93146565 -59390694 - Lx8 LINE L1 -301 7172 6962 3 1295 355 107 0 35 chr5 93146565 93146623 -59390636 - MTA_Mm LTR MaLR -301 95 40 3 1295 234 175 0 73 chr5 93146713 93146781 -59390478 + T-rich Low_complexity Low_complexity 3 65 0 3 1295 428 213 0 0 chr5 93147665 93147740 -59389519 + ID4_ SINE ID 2 76 -7 3 1295 380 257 36 14 chr5 93148083 93148221 -59389038 + B1F1 SINE Alu 1 141 -8 3 1295 311 338 176 5 chr5 93148387 93148586 -59388673 + LTR16A1 LTR ERVL 218 450 -6 3 1295 1074 176 57 24 chr5 93148824 93149033 -59388226 + B3 SINE B2 1 216 0 3 1295 854 249 36 15 chr5 93149267 93149463 -59387796 + ID_B1 SINE B4 13 212 -12 3 1295 441 214 81 73 chr5 93149342 93149478 -59387781 + B1_Mur1 SINE Alu 12 148 -1 3 1295 222 326 54 0 chr5 93149931 93150023 -59387236 + L2a LINE L2 3045 3141 -246 3 1295 236 258 14 155 chr5 93150256 93150398 -59386861 - RMER20B LTR ERVK -99 528 407 3 1295 855 275 24 45 chr5 93150380 93150669 -59386590 - RMER13A LTR ERVK -564 296 14 3 1295 328 285 135 23 chr5 93150769 93150902 -59386357 + L2a LINE L2 3275 3422 -4 3 1295 474 267 0 72 chr5 93151145 93151217 -59386042 - ID_B1 SINE B4 -9 215 144 3 1295 1334 87 17 0 chr5 93151217 93151390 -59385869 - B2_Mm2 SINE B2 -19 176 1 3 1295 474 267 0 72 chr5 93151390 93151442 -59385817 - ID_B1 SINE B4 -81 143 101 3 1295 309 323 10 10 chr5 93151723 93151823 -59385436 - L2 LINE L2 -503 2916 2817 3 1295 259 167 11 43 chr5 93152107 93152201 -59385058 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 3 1295 405 58 0 0 chr5 93152791 93152843 -59384416 + (CAAG)n Simple_repeat Simple_repeat 2 53 0 3 1295 229 284 53 13 chr5 93152853 93152928 -59384331 - MIR3 SINE MIR -24 184 107 3 1295 291 342 171 11 chr5 93152965 93153163 -59384096 + MIRb SINE MIR 6 239 -29 3 1295 523 288 96 56 chr5 93153317 93153373 -59383886 - L1M5 LINE L1 -1402 4744 4700 3 1295 3569 42 2 2 chr5 93153373 93153799 -59383460 + L1_Mus1 LINE L1 6139 6564 -3 3 1295 563 258 112 37 chr5 93153799 93154274 -59382985 - L1M5 LINE L1 -1447 4699 3953 3 1295 581 222 39 23 chr5 93154291 93154420 -59382839 + B1_Mur2 SINE Alu 17 147 -2 3 1295 246 95 0 0 chr5 93154426 93154468 -59382791 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 1295 585 266 6 64 chr5 93155424 93155597 -59381662 - RSINE1 SINE B4 0 165 3 3 1295 210 192 0 0 chr5 93155640 93155692 -59381567 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1295 778 291 84 5 chr5 93156079 93156409 -59380850 - L1M4 LINE L1 -1294 4852 4464 3 1295 1426 67 0 27 chr5 93156409 93156594 -59380665 - B2_Mm2 SINE B2 -14 181 2 3 1295 226 338 72 29 chr5 93156594 93156630 -59380629 - L1M4 LINE L1 -1417 4463 4431 3 1295 320 318 58 11 chr5 93156654 93156800 -59380459 - MLT1A0 LTR MaLR 0 408 212 3 1295 245 227 0 0 chr5 93156778 93156822 -59380437 - MER5A DNA MER1_type -143 46 3 3 1295 443 293 54 50 chr5 93156964 93157203 -59380056 + MIR SINE MIR 3 242 -20 3 1295 724 148 0 198 chr5 93158698 93158875 -59378384 - B1_Mur2 SINE Alu -5 144 3 3 1295 236 281 47 35 chr5 93159292 93159377 -59377882 + MT2B LTR ERVL 170 255 -346 3 1295 234 355 110 11 chr5 93159297 93159388 -59377871 + PB1D10 SINE Alu 11 110 -7 3 1295 380 247 10 31 chr5 93159544 93159640 -59377619 + ID_B1 SINE B4 119 212 -12 3 1295 219 306 0 23 chr5 93159640 93159727 -59377532 + CT-rich Low_complexity Low_complexity 4 88 0 3 1295 332 244 92 30 chr5 93160091 93160222 -59377037 + L1M4 LINE L1 5559 5697 -481 3 1295 500 160 0 0 chr5 93160289 93160389 -59376870 + CT-rich Low_complexity Low_complexity 1 100 0 3 1295 818 262 52 42 chr5 93160420 93160440 -59376819 - L1MB7 LINE L1 -14 6170 6151 3 1295 964 154 21 0 chr5 93160440 93160583 -59376676 + B1_Mus1 SINE Alu 2 147 -1 3 1295 818 262 52 42 chr5 93160583 93160849 -59376410 - L1MB7 LINE L1 -34 6150 5881 3 1295 636 266 75 11 chr5 93160870 93160887 -59376372 - B3A SINE B2 0 198 182 3 1295 327 104 0 0 chr5 93160887 93160935 -59376324 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1295 356 0 23 0 chr5 93160935 93160978 -59376281 + (GA)n Simple_repeat Simple_repeat 1 45 0 3 1295 636 266 75 11 chr5 93160978 93161145 -59376114 - B3A SINE B2 -17 181 2 3 1295 1230 87 53 21 chr5 93161209 93161398 -59375861 - B2_Mm2 SINE B2 0 195 1 3 1295 346 221 156 0 chr5 93161517 93161594 -59375665 + RSINE1 SINE B4 40 128 -37 3 1295 524 15 15 0 chr5 93161616 93161681 -59375578 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1295 695 229 14 0 chr5 93161713 93161857 -59375402 + RSINE1 SINE B4 20 165 0 3 1295 385 250 0 0 chr5 93162081 93162149 -59375110 - ID4 SINE ID -11 72 5 3 1295 549 162 40 64 chr5 93162162 93162287 -59374972 - B1_Mus2 SINE Alu 0 147 26 3 1295 246 236 13 77 chr5 93162222 93162300 -59374959 - RLTR25B LTR ERVK -533 495 423 3 1295 269 267 108 10 chr5 93162320 93162422 -59374837 - B1F SINE Alu -37 112 1 3 1295 463 240 0 39 chr5 93162549 93162653 -59374606 + RSINE1 SINE B4 2 101 -64 3 1295 234 384 18 6 chr5 93162830 93162995 -59374264 + LSU-rRNA_Hsa rRNA rRNA 1718 1884 -3151 3 1295 1320 266 36 22 chr5 93163900 93164257 -59373002 - MTEa LTR MaLR 0 379 18 3 1295 604 267 144 0 chr5 93164680 93164860 -59372399 - ID_B1 SINE B4 -7 217 12 3 1295 520 255 35 21 chr5 93165272 93165416 -59371843 + RSINE1 SINE B4 3 148 -17 3 1295 357 24 0 0 chr5 93166478 93166520 -59370739 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1295 255 61 0 0 chr5 93166520 93166553 -59370706 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1295 378 0 0 0 chr5 93166645 93166687 -59370572 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1295 433 305 50 29 chr5 93167139 93167379 -59369880 - L3 LINE CR1 -119 4370 4126 3 1295 288 320 20 0 chr5 93167606 93167706 -59369553 - MIR SINE MIR -132 130 29 3 1295 403 143 313 26 chr5 93167713 93167828 -59369431 - B2_Mm2 SINE B2 -1 194 47 4 1295 1311 96 11 0 chr5 93167894 93168071 -59369188 - B2_Mm1t SINE B2 -14 179 1 4 1295 1535 182 36 133 chr5 93168252 93168665 -59368594 - ORR1D1 LTR MaLR -1 373 1 4 1295 2335 140 35 5 chr5 93168687 93169088 -59368171 + MTC LTR MaLR 1 413 -8 4 1295 769 264 16 0 chr5 93169272 93169454 -59367805 + B3A SINE B2 1 185 -13 4 1295 313 339 45 18 chr5 93169490 93169712 -59367547 + L1MC4 LINE L1 7625 7852 -190 4 1295 902 242 10 66 chr5 93169682 93169987 -59367272 + L1MA4 LINE L1 5542 5829 -471 4 1295 434 255 70 57 chr5 93169992 93170150 -59367109 + Tigger5 DNA MER2_type 2243 2402 -4 4 1295 3072 72 13 3 chr5 93170150 93170542 -59366717 + MTA_Mm LTR MaLR 1 396 0 4 1295 254 316 25 0 chr5 93170612 93170691 -59366568 - ID4 SINE ID 0 83 3 4 1295 383 0 21 0 chr5 93170781 93170828 -59366431 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1295 845 286 9 0 chr5 93172379 93172599 -59364660 + ID_B1 SINE B4 2 223 -1 4 1295 1366 249 238 34 chr5 93172653 93173405 -59363854 - L1MD2 LINE L1 -67 6175 5295 4 1295 805 194 57 40 chr5 93173407 93173584 -59363675 - B3 SINE B2 -3 213 34 4 1295 836 189 7 0 chr5 93173613 93173761 -59363498 - B1_Mur3 SINE Alu 0 149 1 4 1295 494 242 53 23 chr5 93173821 93173952 -59363307 - B1F1 SINE Alu -2 147 13 4 1295 389 261 59 66 chr5 93173952 93173973 -59363286 - ID_B1 SINE B4 -1 223 73 4 1295 1829 193 16 34 chr5 93174350 93174731 -59362528 + ORR1D1 LTR MaLR 1 374 0 4 1295 203 114 0 54 chr5 93175469 93175506 -59361753 + CT-rich Low_complexity Low_complexity 1 35 0 4 1295 759 249 10 16 chr5 93175547 93175739 -59361520 - ID_B1 SINE B4 -26 198 8 4 1295 770 173 193 11 chr5 93176066 93176247 -59361012 - B3 SINE B2 -1 215 2 4 1295 462 297 43 24 chr5 93176678 93176885 -59360374 - MamGypLTR2c LTR Gypsy -4 1064 854 4 1295 324 0 0 0 chr5 93177655 93177691 -59359568 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 4 1295 673 182 7 22 chr5 93177691 93177826 -59359433 - B1_Mur3 SINE Alu -12 137 5 4 1295 537 16 0 0 chr5 93178825 93178887 -59358372 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 4 1295 875 203 0 0 chr5 93178887 93179035 -59358224 - B1_Mur4 SINE Alu -2 148 1 4 1295 1217 48 0 0 chr5 93179197 93179342 -59357917 - B1_Mus1 SINE Alu -2 146 2 4 1295 244 266 50 12 chr5 93179390 93179470 -59357789 + PB1D10 SINE Alu 14 96 -21 4 1295 676 76 19 28 chr5 93179453 93179561 -59357698 + B1_Mus1 SINE Alu 40 146 -2 4 1295 369 0 0 0 chr5 93179568 93179609 -59357650 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1295 333 0 0 0 chr5 93179609 93179645 -59357614 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1295 315 0 0 0 chr5 93180862 93180897 -59356362 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1295 3926 251 86 17 chr5 93182129 93183229 -59354030 - Lx7 LINE L1 -328 7368 6193 4 1295 555 287 51 77 chr5 93183230 93183447 -59353812 - B3A SINE B2 -13 203 2 4 1295 278 292 0 30 chr5 93183844 93183911 -59353348 + PB1 SINE Alu 43 107 -20 4 1295 42 0 0 0 chr5 93183957 93183999 -59353260 + AT_rich Low_complexity Low_complexity 1 42 0 4 1295 2665 90 85 0 chr5 93184005 93184393 -59352866 + BGLII LTR ERVK 1 421 0 4 1295 618 270 0 38 chr5 93184415 93184600 -59352659 - B3A SINE B2 -20 178 1 4 1295 1062 44 73 0 chr5 93184679 93184816 -59352443 + B1_Mus2 SINE Alu 1 147 0 4 1295 1376 216 76 31 chr5 93185657 93185815 -59351444 + ORR1D2 LTR MaLR 1 178 -192 4 1295 540 129 0 0 chr5 93185815 93185916 -59351343 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 4 1295 1376 216 76 31 chr5 93185916 93186111 -59351148 + ORR1D2 LTR MaLR 179 370 0 4 1295 1659 184 10 103 chr5 93186335 93186398 -59350861 - MTC LTR MaLR -49 372 313 4 1295 2094 93 81 19 chr5 93186398 93186706 -59350553 + ORR1A2 LTR MaLR 1 327 0 4 1295 1659 184 10 103 chr5 93186706 93186816 -59350443 - MTC LTR MaLR -109 312 211 4 1295 570 29 0 0 chr5 93186816 93186884 -59350375 + (TTTC)n Simple_repeat Simple_repeat 2 69 0 4 1295 1659 184 10 103 chr5 93186884 93186912 -59350347 - MTC LTR MaLR -211 210 210 4 1295 1310 92 22 0 chr5 93186912 93187096 -59350163 - B2_Mm2 SINE B2 -7 188 1 4 1295 1659 184 10 103 chr5 93187096 93187298 -59349961 - MTC LTR MaLR -211 210 5 4 1295 936 206 75 0 chr5 93187651 93187850 -59349409 - B3 SINE B2 0 216 3 4 1295 1497 172 19 62 chr5 93188141 93188464 -59348795 - ORR1C1 LTR MaLR 0 378 70 4 1295 333 0 0 0 chr5 93188702 93188739 -59348520 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1295 1001 142 16 37 chr5 93188937 93189127 -59348132 + B2_Mm2 SINE B2 1 186 -9 4 1295 438 267 96 107 chr5 93190030 93190205 -59347054 + L1MB8 LINE L1 5784 5961 -217 4 1295 776 231 90 30 chr5 93190205 93190406 -59346853 + B3 SINE B2 1 213 -3 4 1295 438 265 68 176 chr5 93190406 93190512 -59346747 + L1MB8 LINE L1 5962 6061 -117 4 1295 1523 53 5 5 chr5 93190512 93190702 -59346557 + B2_Mm2 SINE B2 1 190 -5 4 1295 360 265 68 176 chr5 93190702 93190817 -59346442 + L1MB8 LINE L1 6059 6138 -46 4 1295 1326 200 225 20 chr5 93191677 93192024 -59345235 - MTD LTR MaLR -1 418 1 4 1296 207 0 0 0 chr5 93192310 93192333 -59344926 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1296 383 274 132 17 chr5 93192515 93192721 -59344538 - MIR SINE MIR -27 241 11 4 1296 270 0 0 0 chr5 93193060 93193090 -59344169 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1296 1267 20 7 0 chr5 93193092 93193238 -59344021 - B1_Mm SINE Alu 0 147 1 4 1296 685 231 7 13 chr5 93193259 93193408 -59343851 + B1_Mur2 SINE Alu 1 148 -1 4 1296 747 186 19 58 chr5 93193441 93193595 -59343664 + B1_Mur1 SINE Alu 2 149 0 4 1296 493 259 35 14 chr5 93193739 93193880 -59343379 - B1F1 SINE Alu -5 144 1 4 1296 218 246 46 0 chr5 93194185 93194250 -59343009 + (TATG)n Simple_repeat Simple_repeat 3 70 0 4 1296 410 36 0 18 chr5 93194255 93194312 -59342947 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1296 274 270 16 0 chr5 93194319 93194382 -59342877 - B4A SINE B4 -209 83 20 4 1296 334 275 0 12 chr5 93194657 93194738 -59342521 - ID4_ SINE ID 0 83 4 4 1296 384 248 56 19 chr5 93194748 93194855 -59342404 - PB1D10 SINE Alu -2 115 5 4 1296 180 0 0 0 chr5 93194914 93194934 -59342325 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 4 1296 1276 69 28 39 chr5 93194940 93194965 -59342294 - B2_Mm1t SINE B2 -13 180 161 4 1296 387 0 0 0 chr5 93194965 93195008 -59342251 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 4 1296 1276 69 28 39 chr5 93195008 93195163 -59342096 - B2_Mm1t SINE B2 -33 160 2 4 1296 828 187 49 6 chr5 93195165 93195348 -59341911 - B2_Mm2 SINE B2 -2 193 3 4 1296 32 0 0 0 chr5 93195687 93195719 -59341540 + AT_rich Low_complexity Low_complexity 1 32 0 4 1296 2106 140 26 3 chr5 93195761 93196111 -59341148 - RLTR15 LTR ERVK -1 358 1 4 1296 3807 136 103 137 chr5 93197248 93198185 -59339074 + RMER17B LTR ERVK 1 958 0 4 1296 1564 201 68 58 chr5 93198414 93198794 -59338465 - ORR1C2 LTR MaLR 0 384 1 4 1296 826 258 140 45 chr5 93199385 93199721 -59337538 - ORR1E LTR MaLR -8 371 4 4 1296 187 288 107 9 chr5 93200600 93200712 -59336547 - L2a LINE L2 -46 3380 3258 4 1296 2798 71 5 5 chr5 93200716 93201084 -59336175 + L1_Mus3 LINE L1 6266 6633 -5 4 1296 1275 34 0 0 chr5 93201097 93201244 -59336015 + B1_Mm SINE Alu 1 147 0 4 1296 206 75 0 48 chr5 93201244 93201286 -59335973 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4 1296 274 300 0 0 chr5 93201435 93201495 -59335764 + RSINE1 SINE B4 75 134 -31 4 1296 201 335 150 39 chr5 93201524 93201627 -59335632 - L2a LINE L2 -147 3279 3180 4 1296 284 246 0 0 chr5 93201627 93201692 -59335567 + ID4 SINE ID 3 67 -16 4 1296 201 335 150 39 chr5 93201692 93201821 -59335438 - L2a LINE L2 -247 3179 3022 4 1296 660 296 23 0 chr5 93202368 93202540 -59334719 + B3A SINE B2 2 177 -21 4 1296 276 91 0 0 chr5 93202543 93202587 -59334672 + (CAGA)n Simple_repeat Simple_repeat 3 46 0 4 1296 327 154 0 0 chr5 93203263 93203328 -59333931 + CT-rich Low_complexity Low_complexity 2 66 0 4 1296 679 294 22 6 chr5 93203857 93204038 -59333221 + B3 SINE B2 1 184 -32 4 1296 1869 134 73 3 chr5 93204039 93204369 -59332890 + ORR1B1 LTR MaLR 1 353 -41 4 1296 1377 87 16 0 chr5 93204369 93204552 -59332707 + B2_Mm2 SINE B2 1 186 -9 4 1296 1356 48 5 113 chr5 93204557 93204770 -59332489 + B2_Mm2 SINE B2 2 191 -4 4 1296 217 221 162 0 chr5 93204801 93204869 -59332390 + ID4_ SINE ID 2 80 -3 4 1296 487 264 0 0 chr5 93204899 93205009 -59332250 + PB1D9 SINE Alu 5 114 -6 4 1296 237 65 0 0 chr5 93205213 93205244 -59332015 + (TCC)n Simple_repeat Simple_repeat 2 32 0 4 1296 279 283 21 11 chr5 93205309 93205402 -59331857 - PB1D7 SINE Alu -26 94 1 4 1296 419 269 138 32 chr5 93205537 93205725 -59331534 - L1MA4A LINE L1 -371 5932 5725 4 1296 269 292 0 0 chr5 93206181 93206253 -59331006 - ID4 SINE ID -11 72 1 4 1296 340 214 211 18 chr5 93206376 93206542 -59330717 - MIR SINE MIR -20 248 69 4 1296 1000 141 0 13 chr5 93207691 93207842 -59329417 + B1_Mur3 SINE Alu 1 149 0 4 1296 284 221 13 0 chr5 93207884 93207961 -59329298 + GA-rich Low_complexity Low_complexity 2 79 0 4 1296 308 301 81 34 chr5 93208004 93208238 -59329021 - B4A SINE B4 -36 256 12 4 1296 844 160 28 0 chr5 93208263 93208407 -59328852 - B1_Mur4 SINE Alu -2 148 1 4 1296 1932 97 3 109 chr5 93208542 93208901 -59328358 - ORR1A4 LTR MaLR -8 321 1 4 1296 578 222 199 10 chr5 93208905 93209137 -59328122 - L1MC3 LINE L1 -191 6153 5874 5 1296 457 262 56 24 chr5 93209294 93209419 -59327840 + ID_B1 SINE B4 81 209 -15 5 1296 309 238 140 19 chr5 93209323 93209430 -59327829 + B1_Mur1 SINE Alu 28 147 -2 5 1296 182 318 118 0 chr5 93209539 93209649 -59327610 - L2a LINE L2 -1 3425 3303 5 1296 799 184 179 0 chr5 93210242 93210410 -59326849 - B3 SINE B2 -17 199 2 5 1296 255 239 28 14 chr5 93210480 93210552 -59326707 + L1MA9 LINE L1 5722 5794 -395 5 1296 301 273 105 62 chr5 93210587 93210845 -59326414 + L1MA7 LINE L1 5783 6051 -240 5 1296 282 260 152 16 chr5 93210847 93210972 -59326287 + B1F1 SINE Alu 5 147 -2 5 1296 474 308 37 62 chr5 93210981 93211112 -59326147 + L1MA9 LINE L1 6043 6174 -138 5 1296 339 25 0 0 chr5 93211112 93211152 -59326107 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1296 474 308 37 62 chr5 93211152 93211262 -59325997 + L1MA9 LINE L1 6175 6278 -34 5 1296 235 311 13 26 chr5 93211262 93211338 -59325921 - tRNA-Ala-GCG tRNA tRNA 0 75 1 5 1296 237 319 14 14 chr5 93211271 93211344 -59325915 - ID4_ SINE ID -10 73 1 5 1296 367 273 40 73 chr5 93211407 93211557 -59325702 + RSINE1 SINE B4 5 149 -16 5 1296 385 220 28 117 chr5 93212575 93212755 -59324504 - MamRep605 Unknown Unknown -622 254 91 5 1296 237 132 0 0 chr5 93212997 93213035 -59324224 + (CTA)n Simple_repeat Simple_repeat 1 38 0 5 1296 1028 236 9 0 chr5 93213800 93214012 -59323247 + B3 SINE B2 2 215 -1 5 1296 724 193 0 70 chr5 93214017 93214173 -59323086 + B1_Mur2 SINE Alu 2 146 -3 5 1296 282 95 0 0 chr5 93214246 93214288 -59322971 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1296 451 185 12 0 chr5 93214322 93214403 -59322856 - B3A SINE B2 -56 142 61 5 1296 383 201 98 23 chr5 93214569 93214681 -59322578 + B1_Mur1 SINE Alu 3 118 -31 5 1296 915 77 248 14 chr5 93214722 93214867 -59322392 - B2_Mm2 SINE B2 -15 180 2 5 1296 226 260 40 14 chr5 93215546 93215620 -59321639 - MTEa LTR MaLR -14 365 290 5 1296 513 128 0 75 chr5 93216058 93216151 -59321108 - B1_Mur4 SINE Alu -23 127 42 5 1296 303 28 0 0 chr5 93216502 93216538 -59320721 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1296 705 167 0 31 chr5 93216553 93216683 -59320576 - B1_Mus1 SINE Alu -21 127 2 5 1296 873 233 14 34 chr5 93217163 93217372 -59319887 - B3 SINE B2 -3 213 9 5 1296 717 212 50 0 chr5 93217580 93217740 -59319519 + ID_B1 SINE B4 35 202 -22 5 1296 1180 90 56 6 chr5 93218823 93219002 -59318257 - B2_Mm2 SINE B2 -6 189 2 5 1296 662 266 55 87 chr5 93219376 93219594 -59317665 - ID_B1 SINE B4 -13 211 1 5 1296 228 86 0 0 chr5 93219843 93219878 -59317381 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 5 1296 287 192 19 0 chr5 93219960 93220012 -59317247 - ID_B1 SINE B4 -26 198 146 5 1296 703 243 21 27 chr5 93220051 93220237 -59317022 - B3A SINE B2 -13 185 1 5 1296 357 221 0 13 chr5 93220237 93220315 -59316944 - ID_B1 SINE B4 -67 157 81 5 1296 252 283 0 0 chr5 93221209 93221269 -59315990 + C-rich Low_complexity Low_complexity 2 61 0 5 1296 381 22 0 0 chr5 93221600 93221646 -59315613 + (TTA)n Simple_repeat Simple_repeat 3 48 0 5 1296 3525 101 99 0 chr5 93221646 93221728 -59315531 - Lx2 LINE L1 -6 6991 6882 5 1296 222 37 0 0 chr5 93221728 93221755 -59315504 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 5 1296 3525 101 99 0 chr5 93221755 93222196 -59315063 - Lx2 LINE L1 -116 6881 6417 5 1296 486 202 0 0 chr5 93222295 93222379 -59314880 + B4 SINE B4 2 85 -207 5 1296 1061 103 7 0 chr5 93222390 93222536 -59314723 + B1_Mus1 SINE Alu 2 148 0 5 1296 501 209 70 0 chr5 93222729 93222815 -59314444 - B1_Mur4 SINE Alu -49 101 10 5 1296 836 205 7 20 chr5 93222840 93222989 -59314270 - B1_Mur2 SINE Alu -1 148 2 5 1296 770 228 127 41 chr5 93223001 93223045 -59314214 - B3 SINE B2 -1 215 174 5 1296 2194 127 12 3 chr5 93223045 93223369 -59313890 + ORR1A2 LTR MaLR 1 327 0 5 1296 770 228 127 41 chr5 93223369 93223521 -59313738 - B3 SINE B2 -43 173 2 5 1296 528 299 95 14 chr5 93223559 93223769 -59313490 + Lx8 LINE L1 6474 6700 -773 5 1296 2345 101 45 3 chr5 93223780 93224138 -59313121 - ORR1B1 LTR MaLR -21 373 1 5 1296 464 281 47 0 chr5 93224140 93224268 -59312991 + Lx8 LINE L1 6700 6833 -640 5 1296 279 0 0 0 chr5 93224275 93224306 -59312953 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1296 1968 232 95 47 chr5 93224309 93224888 -59312371 + Lx8 LINE L1 6865 7471 -2 5 1296 222 184 0 0 chr5 93225020 93225058 -59312201 + (CCA)n Simple_repeat Simple_repeat 1 38 0 5 1296 287 275 14 0 chr5 93225139 93225208 -59312051 - RSINE1 SINE B4 -93 72 3 5 1296 261 0 0 0 chr5 93225905 93225934 -59311325 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1296 658 286 11 28 chr5 93226159 93226339 -59310920 - B3A SINE B2 -15 183 7 5 1296 663 196 0 95 chr5 93226680 93226827 -59310432 + B1_Mur1 SINE Alu 1 133 -16 5 1296 360 0 0 0 chr5 93226828 93226868 -59310391 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1296 675 71 0 0 chr5 93226870 93226968 -59310291 + (GA)n Simple_repeat Simple_repeat 1 98 0 5 1296 504 0 0 0 chr5 93227928 93227984 -59309275 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1296 603 271 36 12 chr5 93227990 93228158 -59309101 - ID_B1 SINE B4 -12 212 41 5 1296 489 47 0 0 chr5 93228197 93228261 -59308998 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 5 1296 1118 80 0 0 chr5 93228261 93228399 -59308860 - B1_Mus1 SINE Alu -9 139 2 5 1296 378 0 0 0 chr5 93229182 93229224 -59308035 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1296 293 198 59 47 chr5 93229253 93229338 -59307921 + ORR1E LTR MaLR 3 88 -271 5 1296 246 321 54 103 chr5 93229401 93229585 -59307674 + ORR1E LTR MaLR 87 261 -109 5 1296 1595 279 50 102 chr5 93229909 93230410 -59306849 - L1_Mur3 LINE L1 -3316 2564 2107 5 1296 1046 195 40 5 chr5 93230410 93230611 -59306648 + B3 SINE B2 2 209 -7 5 1296 1230 188 19 14 chr5 93230614 93230825 -59306434 - B3 SINE B2 -4 212 1 5 1296 1595 279 50 102 chr5 93230825 93231403 -59305856 - L1_Mur3 LINE L1 -3774 2106 1538 5 1296 1160 62 21 0 chr5 93231484 93231629 -59305630 - B1_Mus1 SINE Alu 0 148 1 5 1296 485 252 160 26 chr5 93231723 93231878 -59305381 - B3 SINE B2 -2 193 32 5 1296 292 272 18 72 chr5 93232277 93232388 -59304871 + MIR SINE MIR 84 188 -74 5 1296 771 294 19 0 chr5 93232399 93232613 -59304646 + ID_B1 SINE B4 3 220 -4 5 1296 237 286 0 94 chr5 93233741 93233826 -59303433 + B4A SINE B4 189 265 -27 5 1296 1031 99 7 0 chr5 93233839 93233981 -59303278 - B1_Mus1 SINE Alu 0 148 6 5 1296 237 319 0 0 chr5 93234012 93234081 -59303178 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1296 185 65 0 31 chr5 93234134 93234166 -59303093 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 5 1296 1032 45 90 0 chr5 93234166 93234300 -59302959 - B1_Mus1 SINE Alu 0 148 3 5 1296 248 366 48 24 chr5 93234332 93234458 -59302801 - L2a LINE L2 -18 3408 3280 5 1296 292 176 98 0 chr5 93235278 93235329 -59301930 - B1_Mus2 SINE Alu -86 61 6 5 1296 26 50 0 0 chr5 93235333 93235373 -59301886 + AT_rich Low_complexity Low_complexity 1 40 0 5 1296 225 217 17 0 chr5 93235411 93235471 -59301788 + (TA)n Simple_repeat Simple_repeat 1 61 0 5 1296 318 132 0 0 chr5 93235589 93235642 -59301617 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1296 234 276 0 17 chr5 93236332 93236391 -59300868 - ID SINE ID -153 71 14 5 1296 809 148 49 14 chr5 93236736 93236880 -59300379 - B1_Mur3 SINE Alu 0 149 1 5 1296 378 0 0 0 chr5 93236917 93236959 -59300300 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1296 429 20 0 0 chr5 93237525 93237575 -59299684 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1296 222 62 0 0 chr5 93240576 93240608 -59296651 + (C)n Simple_repeat Simple_repeat 1 32 0 5 1296 195 42 0 0 chr5 93240696 93240720 -59296539 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1296 324 241 0 0 chr5 93241462 93241520 -59295739 - ID_B1 SINE B4 -22 202 145 5 1296 591 198 11 28 chr5 93241561 93241743 -59295516 + CT-rich Low_complexity Low_complexity 2 180 0 5 1296 859 113 8 16 chr5 93242827 93242953 -59294306 - B3 SINE B2 -90 126 2 5 1296 189 0 0 0 chr5 93243303 93243324 -59293935 + (CAA)n Simple_repeat Simple_repeat 2 22 0 5 1296 1511 47 0 26 chr5 93243438 93243633 -59293626 - B2_Mm2 SINE B2 -5 190 1 5 1296 583 332 52 35 chr5 93243783 93244070 -59293189 + B4A SINE B4 1 292 0 5 1296 1523 48 37 5 chr5 93244804 93244992 -59292267 - B2_Mm2 SINE B2 -1 194 1 5 1296 217 283 128 21 chr5 93245410 93245504 -59291755 - MIR SINE MIR -156 106 3 5 1296 453 217 0 0 chr5 93245548 93245650 -59291609 - BC1_Mm scRNA scRNA -50 102 1 5 1296 291 272 61 18 chr5 93245731 93245823 -59291436 + L2a LINE L2 3293 3423 -3 5 1296 263 301 69 99 chr5 93246552 93246814 -59290445 - RMER21A LTR ERV1 -3 944 691 5 1296 1336 85 32 5 chr5 93246827 93246841 -59290418 - B2_Mm2 SINE B2 0 195 182 5 1296 1234 118 43 0 chr5 93246841 93247028 -59290231 - B2_Mm2 SINE B2 0 195 1 5 1296 1336 85 32 5 chr5 93247028 93247203 -59290056 - B2_Mm2 SINE B2 -14 181 2 5 1296 508 29 29 0 chr5 93247374 93247444 -59289815 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 5 1296 1665 37 0 0 chr5 93247444 93247633 -59289626 - B2_Mm1t SINE B2 -3 190 2 5 1296 869 64 40 17 chr5 93247633 93247808 -59289451 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 5 1296 958 159 0 0 chr5 93247863 93248008 -59289251 + B1_Mus2 SINE Alu 3 147 0 5 1296 457 363 48 9 chr5 93248100 93248328 -59288931 + MIR SINE MIR 13 249 -13 5 1296 300 333 0 64 chr5 93248331 93248349 -59288910 - ID_B1 SINE B4 -41 183 82 5 1296 409 253 121 0 chr5 93248349 93248440 -59288819 - B1F SINE Alu -25 102 1 5 1296 275 258 15 29 chr5 93248737 93248805 -59288454 + ID4 SINE ID 7 73 -10 6 1296 272 48 24 0 chr5 93249366 93249408 -59287851 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1296 221 298 0 0 chr5 93249408 93249465 -59287794 + GA-rich Low_complexity Low_complexity 3 59 0 6 1296 21 0 0 0 chr5 93250216 93250237 -59287022 + AT_rich Low_complexity Low_complexity 1 21 0 6 1296 211 333 40 20 chr5 93250647 93250748 -59286511 - L2c LINE L2 -39 3348 3246 6 1296 219 69 0 0 chr5 93250762 93250791 -59286468 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1296 1068 251 48 48 chr5 93250806 93251041 -59286218 + B4 SINE B4 2 234 -58 6 1296 510 226 126 82 chr5 93251041 93251248 -59286011 + B3 SINE B2 1 216 0 6 1296 1068 251 48 48 chr5 93251248 93251301 -59285958 + B4 SINE B4 235 290 -2 6 1296 194 0 39 0 chr5 93251322 93251348 -59285911 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1296 297 243 26 39 chr5 93251363 93251440 -59285819 + ID4_ SINE ID 4 79 -4 6 1296 252 0 0 0 chr5 93251444 93251472 -59285787 + (TAA)n Simple_repeat Simple_repeat 1 28 0 6 1296 757 263 5 32 chr5 93251494 93251521 -59285738 - B3 SINE B2 -6 210 184 6 1296 707 0 12 0 chr5 93251521 93251604 -59285655 + (TC)n Simple_repeat Simple_repeat 2 85 0 6 1296 757 263 5 32 chr5 93251604 93251792 -59285467 - B3 SINE B2 -33 183 1 6 1296 315 266 8 52 chr5 93252267 93252382 -59284877 - ID4 SINE ID -40 112 1 6 1296 267 304 25 12 chr5 93252933 93253013 -59284246 + ID SINE ID 3 83 -141 6 1296 442 235 0 56 chr5 93253072 93253180 -59284079 + PB1D10 SINE Alu 6 107 -10 6 1296 290 314 14 0 chr5 93254218 93254288 -59282971 + RSINE1 SINE B4 82 152 -13 6 1296 239 240 0 0 chr5 93254324 93254374 -59282885 + GA-rich Low_complexity Low_complexity 1 50 0 6 1296 404 244 0 0 chr5 93254399 93254481 -59282778 - ID4 SINE ID -1 82 1 6 1296 326 304 28 42 chr5 93254675 93254819 -59282440 + MER20 DNA MER1_type 1 142 -77 6 1296 208 137 39 0 chr5 93254881 93254932 -59282327 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1296 530 171 28 17 chr5 93254951 93255129 -59282130 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1296 446 122 41 0 chr5 93255187 93255285 -59281974 + (CA)n Simple_repeat Simple_repeat 1 102 0 6 1296 243 298 132 55 chr5 93255516 93255736 -59281523 + LTR78 LTR ERV1 644 880 -424 6 1296 233 329 38 12 chr5 93256218 93256298 -59280961 + MT2B LTR ERVL 168 249 -352 6 1296 186 43 0 0 chr5 93256619 93256642 -59280617 + (TG)n Simple_repeat Simple_repeat 2 24 0 6 1296 513 0 0 0 chr5 93257089 93257146 -59280113 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1296 621 203 7 43 chr5 93257153 93257292 -59279967 - B1_Mur1 SINE Alu -13 136 3 6 1296 708 286 160 8 chr5 93257440 93257690 -59279569 + B4A SINE B4 1 288 -4 6 1296 504 226 78 9 chr5 93257784 93257900 -59279359 + B1_Mur2 SINE Alu 26 149 0 6 1296 971 232 39 5 chr5 93257916 93258124 -59279135 + B3 SINE B2 1 215 -1 6 1296 775 100 132 73 chr5 93258273 93258424 -59278835 - B2_Mm2 SINE B2 -5 190 31 6 1296 270 0 0 0 chr5 93258819 93258849 -59278410 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1296 699 232 13 7 chr5 93258856 93259008 -59278251 - B3A SINE B2 -39 159 7 6 1296 472 209 0 0 chr5 93259326 93259412 -59277847 - B3 SINE B2 -130 86 1 6 1296 405 90 0 0 chr5 93259674 93259741 -59277518 + (TCTG)n Simple_repeat Simple_repeat 4 70 0 6 1296 204 348 59 22 chr5 93261252 93261387 -59275872 + MIR SINE MIR 18 157 -111 6 1296 279 226 49 14 chr5 93261389 93261486 -59275773 + ID4_ SINE ID 1 98 -54 6 1296 318 50 0 0 chr5 93261486 93261526 -59275733 + (GGGA)n Simple_repeat Simple_repeat 2 41 0 6 1296 288 156 0 0 chr5 93261560 93261605 -59275654 + MER5A DNA MER1_type 40 84 -105 6 1296 747 259 0 122 chr5 93261620 93261738 -59275521 + L1MB3 LINE L1 5205 5311 -872 6 1296 743 228 0 13 chr5 93261738 93261889 -59275370 + B1_Mur1 SINE Alu 1 149 0 6 1296 747 269 69 116 chr5 93261889 93262422 -59274837 + L1MB3 LINE L1 5312 5834 -349 6 1296 396 82 0 0 chr5 93262654 93262715 -59274544 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 6 1296 1146 76 0 0 chr5 93262741 93262885 -59274374 - B1_Mus2 SINE Alu 0 147 4 6 1296 281 309 30 20 chr5 93262893 93262992 -59274267 + L1MB3 LINE L1 5901 6000 -183 6 1296 969 202 43 24 chr5 93263023 93263231 -59274028 - B3 SINE B2 -3 213 2 6 1296 387 0 0 0 chr5 93263241 93263284 -59273975 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1296 630 295 79 10 chr5 93263301 93263503 -59273756 + ID_B1 SINE B4 6 221 -3 6 1296 1207 54 7 0 chr5 93265344 93265491 -59271768 + B1_Mus1 SINE Alu 1 148 0 6 1296 377 198 139 19 chr5 93265512 93265620 -59271639 - L1MB3 LINE L1 -11 6172 6052 6 1296 240 163 0 0 chr5 93265627 93265670 -59271589 + (TTA)n Simple_repeat Simple_repeat 2 44 0 6 1296 1014 209 28 5 chr5 93265679 93265890 -59271369 - B3 SINE B2 0 216 1 6 1296 251 290 14 0 chr5 93265977 93266046 -59271213 + CT-rich Low_complexity Low_complexity 2 71 0 6 1296 907 151 14 0 chr5 93268100 93268239 -59269020 - B1_Mur1 SINE Alu 0 149 9 6 1296 925 220 69 20 chr5 93269093 93269297 -59267962 - B3 SINE B2 -1 215 2 6 1296 450 79 0 0 chr5 93269399 93269462 -59267797 + (TCC)n Simple_repeat Simple_repeat 3 65 0 6 1296 336 279 28 46 chr5 93269745 93269854 -59267405 - PB1D10 SINE Alu -10 107 1 6 1296 303 241 0 12 chr5 93271002 93271086 -59266173 + GA-rich Low_complexity Low_complexity 1 83 0 6 1296 518 179 34 11 chr5 93271086 93271261 -59265998 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 6 1296 219 36 0 0 chr5 93271463 93271491 -59265768 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 6 1296 477 241 124 29 chr5 93273559 93273696 -59263563 - RSINE1 SINE B4 -15 150 1 6 1296 408 217 0 0 chr5 93274274 93274366 -59262893 + CT-rich Low_complexity Low_complexity 3 94 0 6 1296 337 214 178 30 chr5 93274691 93274792 -59262467 - PB1D10 SINE Alu -1 116 1 6 1296 409 290 95 14 chr5 93274792 93274868 -59262391 - ID_B1 SINE B4 -134 90 3 6 1296 226 267 122 19 chr5 93275000 93275016 -59262243 - CYRA11_Mm Unknown Y-chromosome -233 384 267 6 1296 549 154 44 0 chr5 93275016 93275107 -59262152 + URR1A DNA MER1_type 38 132 -94 6 1296 333 224 40 0 chr5 93275105 93275181 -59262078 - B1F1 SINE Alu -70 79 1 6 1296 1315 81 6 0 chr5 93275238 93275412 -59261847 - B2_Mm2 SINE B2 -15 180 6 6 1296 947 113 21 0 chr5 93275882 93276013 -59261246 + B1_Mur3 SINE Alu 5 138 -11 6 1296 185 65 32 0 chr5 93276013 93276044 -59261215 + (CAA)n Simple_repeat Simple_repeat 2 33 0 6 1296 1155 68 7 0 chr5 93276107 93276253 -59261006 + B1_Mus2 SINE Alu 1 147 0 6 1296 309 51 0 0 chr5 93276253 93276292 -59260967 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1296 322 306 71 22 chr5 93276393 93276543 -59260716 - MIRb SINE MIR -106 162 2 6 1296 838 138 71 14 chr5 93276677 93276817 -59260442 - B1_Mur4 SINE Alu -2 148 1 6 1296 403 336 131 68 chr5 93277829 93278295 -59258964 - L2 LINE L2 -455 2964 2474 6 1296 351 0 0 0 chr5 93278295 93278334 -59258925 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1296 403 336 131 68 chr5 93278334 93278816 -59258443 - L2 LINE L2 -946 2473 1957 6 1296 225 248 3 43 chr5 93279429 93279494 -59257765 - MIR SINE MIR -181 95 34 6 1296 193 298 141 50 chr5 93280622 93280721 -59256538 - L2a LINE L2 -14 3412 3305 6 1296 198 0 0 0 chr5 93281177 93281199 -59256060 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1296 1023 90 7 34 chr5 93281586 93281735 -59255524 - B1_Mus2 SINE Alu -1 146 2 6 1296 407 135 173 0 chr5 93281746 93281857 -59255402 - B2_Mm2 SINE B2 0 195 46 6 1296 1097 82 126 0 chr5 93281885 93282044 -59255215 - B2_Mm1t SINE B2 -14 179 1 6 1296 189 0 0 0 chr5 93282449 93282470 -59254789 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1296 641 276 59 20 chr5 93282629 93282832 -59254427 - B4A SINE B4 0 292 82 6 1296 801 87 0 0 chr5 93282844 93282959 -59254300 + (TTTC)n Simple_repeat Simple_repeat 3 117 0 6 1296 854 240 35 30 chr5 93282983 93283181 -59254078 - B3 SINE B2 -9 207 9 6 1296 1274 21 0 14 chr5 93283193 93283341 -59253918 - B1_Mus2 SINE Alu 0 147 2 6 1296 778 256 28 0 chr5 93283741 93283921 -59253338 + ID_B1 SINE B4 6 190 -34 6 1296 387 297 18 18 chr5 93284475 93284588 -59252671 + RSINE1 SINE B4 6 118 -47 6 1296 1605 27 27 0 chr5 93284588 93284775 -59252484 + B2_Mm1a SINE B2 2 193 0 6 1296 225 0 0 0 chr5 93284796 93284821 -59252438 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1296 228 195 0 24 chr5 93284823 93284865 -59252394 + RSINE1 SINE B4 108 148 -17 6 1296 210 233 0 0 chr5 93284885 93284928 -59252331 + (CAA)n Simple_repeat Simple_repeat 3 45 0 6 1296 363 321 21 49 chr5 93288194 93288338 -59248921 - B1F2 SINE Alu -9 140 1 6 1296 216 261 157 14 chr5 93288361 93288431 -59248828 - ID4 SINE ID 0 83 4 6 1296 233 189 54 54 chr5 93288455 93288511 -59248748 - ID4 SINE ID -13 70 15 6 1296 801 175 4 0 chr5 93288554 93288840 -59248419 + (CA)n Simple_repeat Simple_repeat 1 287 0 6 1296 771 288 32 12 chr5 93289406 93289652 -59247607 - MIR SINE MIR -4 258 8 6 1296 889 232 112 10 chr5 93289887 93290092 -59247167 - B4A SINE B4 -3 289 64 6 1296 297 364 64 41 chr5 93290677 93290849 -59246410 - MIRb SINE MIR -91 177 2 6 1296 413 296 0 44 chr5 93291587 93291700 -59245559 - MER21B LTR ERV1 -107 756 649 6 1296 268 314 80 8 chr5 93291700 93291825 -59245434 + ORR1E LTR MaLR 1 134 -225 6 1296 422 244 0 0 chr5 93292116 93292202 -59245057 + B3 SINE B2 1 86 -130 6 1296 282 160 0 0 chr5 93292606 93292656 -59244603 + T-rich Low_complexity Low_complexity 1 50 0 7 1296 182 37 37 0 chr5 93292692 93292719 -59244540 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7 1296 775 291 9 52 chr5 93293516 93293748 -59243511 - ID_B1 SINE B4 -2 222 1 7 1296 420 258 183 6 chr5 93294702 93294866 -59242393 - MLT1B LTR MaLR 0 390 198 7 1296 247 237 60 14 chr5 93294905 93294998 -59242261 - ID4 SINE ID -46 106 5 7 1296 656 315 30 74 chr5 93295107 93295308 -59241951 - B4 SINE B4 -8 284 94 7 1296 1376 62 0 59 chr5 93295308 93295350 -59241909 - B2_Mm2 SINE B2 -2 193 162 7 1296 306 0 0 0 chr5 93295350 93295384 -59241875 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 7 1296 1376 62 0 59 chr5 93295384 93295545 -59241714 - B2_Mm2 SINE B2 -34 161 2 7 1296 656 315 30 74 chr5 93295545 93295614 -59241645 - B4 SINE B4 -199 93 26 7 1296 1246 48 0 0 chr5 93296944 93297090 -59240169 - B1_Mus2 SINE Alu 0 147 2 7 1296 207 0 0 0 chr5 93297178 93297201 -59240058 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1296 532 274 30 0 chr5 93297489 93297624 -59239635 - B1_Mur2 SINE Alu -10 139 1 7 1296 518 282 130 43 chr5 93297644 93297829 -59239430 - MER20 DNA MER1_type -17 202 2 7 1296 803 194 165 16 chr5 93298168 93298362 -59238897 - URR1B DNA MER1_type -2 223 1 7 1296 228 269 50 58 chr5 93298604 93298748 -59238511 - MIR SINE MIR -101 167 16 7 1296 27 49 0 0 chr5 93299836 93299877 -59237382 + AT_rich Low_complexity Low_complexity 1 41 0 7 1296 1650 191 148 6 chr5 93300052 93300404 -59236855 - MTD LTR MaLR 0 419 18 7 1296 251 54 0 26 chr5 93300406 93300444 -59236815 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 7 1296 685 166 7 7 chr5 93300579 93300725 -59236534 + CT-rich Low_complexity Low_complexity 2 147 0 7 1296 1000 125 11 11 chr5 93300725 93300903 -59236356 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 7 1296 656 213 23 8 chr5 93300903 93301031 -59236228 - B1_Mur1 SINE Alu -10 139 10 7 1296 627 234 90 0 chr5 93302170 93302337 -59234922 + B3A SINE B2 1 182 -16 7 1296 229 116 70 28 chr5 93302486 93302557 -59234702 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 1296 901 154 0 39 chr5 93303269 93303424 -59233835 + B1_Mur4 SINE Alu 1 149 -1 7 1296 531 263 111 2 chr5 93304066 93304275 -59232984 - Lx7 LINE L1 -406 5758 5544 7 1296 659 344 71 15 chr5 93304314 93304580 -59232679 - MLT1E2 LTR MaLR 0 627 347 7 1296 222 62 0 0 chr5 93305359 93305391 -59231868 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1296 1329 95 10 10 chr5 93305559 93305751 -59231508 + B2_Mm2 SINE B2 2 193 -2 7 1296 320 209 30 0 chr5 93305849 93305916 -59231343 - PB1D7 SINE Alu -51 69 1 7 1296 279 0 0 0 chr5 93306440 93306471 -59230788 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1296 351 113 0 0 chr5 93306648 93306701 -59230558 + (TTTTC)n Simple_repeat Simple_repeat 2 54 0 7 1296 481 184 61 0 chr5 93306702 93306800 -59230459 - B1_Mur1 SINE Alu 0 149 46 7 1296 278 230 99 10 chr5 93306833 93306934 -59230325 - Lx5 LINE L1 -2 7048 6939 7 1296 382 241 215 15 chr5 93306956 93307091 -59230168 + B4A SINE B4 131 292 0 7 1296 730 156 35 21 chr5 93307187 93307331 -59229928 + B1_Mur4 SINE Alu 3 148 -2 7 1296 439 240 86 13 chr5 93307935 93308087 -59229172 - RSINE1 SINE B4 0 165 3 7 1296 945 113 14 21 chr5 93308165 93308302 -59228957 + B1_Mur4 SINE Alu 3 141 -9 7 1296 333 0 0 0 chr5 93308302 93308339 -59228920 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 1296 833 209 126 0 chr5 93308510 93308701 -59228558 - B3 SINE B2 0 216 2 7 1296 195 274 0 73 chr5 93308786 93308841 -59228418 - MER5B DNA MER1_type -52 126 76 7 1296 361 258 0 0 chr5 93308963 93309025 -59228234 + ID4 SINE ID 2 63 -20 7 1296 254 266 0 86 chr5 93310606 93310676 -59226583 - RSINE1 SINE B4 -74 91 28 7 1296 1682 169 96 67 chr5 93310652 93311026 -59226233 - MTD LTR MaLR -32 387 3 7 1296 693 290 119 25 chr5 93311072 93311426 -59225833 + L1MB3 LINE L1 5790 6176 -7 7 1296 719 287 92 30 chr5 93311887 93312257 -59225002 + L1MB8 LINE L1 5689 6081 -97 7 1296 1281 102 11 0 chr5 93312591 93312768 -59224491 - B2_Mm1t SINE B2 -14 179 1 7 1296 231 264 8 167 chr5 93312768 93312900 -59224359 - L2a LINE L2 -12 3414 3304 7 1296 180 373 0 0 chr5 93312982 93313041 -59224218 + L2 LINE L2 2831 2889 -530 7 1296 23 0 0 0 chr5 93313308 93313331 -59223928 + AT_rich Low_complexity Low_complexity 1 23 0 7 1296 799 175 66 0 chr5 93313342 93313479 -59223780 + B1_Mur3 SINE Alu 2 147 -2 7 1296 394 296 31 0 chr5 93313504 93313602 -59223657 + PB1D7 SINE Alu 18 118 -2 7 1296 478 192 36 94 chr5 93313692 93313830 -59223429 - B3A SINE B2 0 198 69 7 1296 311 141 16 0 chr5 93314523 93314587 -59222672 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1296 305 258 0 18 chr5 93314665 93314949 -59222310 + (TG)n Simple_repeat Simple_repeat 1 278 0 7 1296 25 0 0 0 chr5 93315595 93315620 -59221639 + AT_rich Low_complexity Low_complexity 1 25 0 7 1296 720 188 0 14 chr5 93315667 93315877 -59221382 + GA-rich Low_complexity Low_complexity 1 206 0 7 1296 363 250 36 0 chr5 93316331 93316415 -59220844 + RSINE1 SINE B4 55 141 -24 7 1296 189 0 0 0 chr5 93319140 93319161 -59218098 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1296 1124 138 31 11 chr5 93320449 93320640 -59216619 - B2_Mm2 SINE B2 0 195 1 7 1296 558 110 0 12 chr5 93320687 93320770 -59216489 - URR1B DNA MER1_type 0 225 144 7 1296 1319 56 0 0 chr5 93320776 93320937 -59216322 + B2_Mm2 SINE B2 2 162 -33 7 1296 180 0 0 0 chr5 93320937 93320957 -59216302 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7 1296 234 202 0 110 chr5 93320959 93321059 -59216200 + CYRA11_Mm Unknown Y-chromosome 246 334 -283 7 1296 730 181 7 110 chr5 93320970 93321125 -59216134 - URR1B DNA MER1_type -76 149 11 7 1296 620 249 96 30 chr5 93322215 93322414 -59214845 - ID_B1 SINE B4 -8 216 5 7 1297 297 0 0 0 chr5 93323569 93323602 -59213657 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1297 1036 195 65 0 chr5 93323748 93323948 -59213311 + B3 SINE B2 1 213 -3 7 1297 26 0 0 0 chr5 93324216 93324242 -59213017 + AT_rich Low_complexity Low_complexity 1 26 0 7 1297 420 276 145 8 chr5 93324268 93324385 -59212874 - RSINE1 SINE B4 -21 144 12 7 1297 621 208 21 7 chr5 93325493 93325638 -59211621 + B1_Mus2 SINE Alu 1 147 0 7 1297 23 68 0 0 chr5 93326970 93327014 -59210245 + GC_rich Low_complexity Low_complexity 1 44 0 7 1297 368 301 39 39 chr5 93328623 93328751 -59208508 + L3b LINE CR1 274 401 -81 7 1297 230 242 59 69 chr5 93329397 93329499 -59207760 - L1MA5 LINE L1 -5 6295 6195 7 1297 767 270 32 85 chr5 93330164 93330504 -59206755 + L1ME2 LINE L1 5585 5906 -258 7 1297 258 320 13 0 chr5 93330518 93330593 -59206666 - ID4_ SINE ID -6 77 2 7 1297 304 260 106 0 chr5 93331152 93331256 -59206003 + Lx7 LINE L1 7150 7264 -432 7 1297 236 162 28 42 chr5 93331336 93331407 -59205852 + T-rich Low_complexity Low_complexity 4 73 0 7 1297 771 151 0 38 chr5 93331503 93331634 -59205625 - B1_Mus2 SINE Alu -21 126 1 7 1297 23 0 0 0 chr5 93331636 93331659 -59205600 + AT_rich Low_complexity Low_complexity 1 23 0 7 1297 795 146 8 0 chr5 93331932 93332055 -59205204 + B1_Mus1 SINE Alu 1 124 -24 7 1297 304 273 44 22 chr5 93332862 93332952 -59204307 - MIR SINE MIR -74 188 97 7 1297 463 240 0 27 chr5 93333239 93333423 -59203836 + (CA)n Simple_repeat Simple_repeat 1 179 0 7 1297 495 220 18 0 chr5 93333423 93333532 -59203727 - PB1D10 SINE Alu -6 111 1 7 1297 1162 186 50 57 chr5 93333843 93334123 -59203136 - MTD LTR MaLR -141 278 1 7 1297 1204 158 50 23 chr5 93335406 93335626 -59201633 - URR1A DNA MER1_type 0 226 1 7 1297 1063 109 55 0 chr5 93336026 93336191 -59201068 + B2_Mm2 SINE B2 21 194 -1 7 1297 274 286 0 0 chr5 93336207 93336270 -59200989 + B1F2 SINE Alu 5 67 -82 7 1297 710 172 67 58 chr5 93336892 93337069 -59200190 - B3 SINE B2 -10 185 1 7 1297 347 253 179 99 chr5 93337985 93338147 -59199112 - B4A SINE B4 -116 176 2 7 1297 244 331 160 8 chr5 93338246 93338371 -59198888 + MIR SINE MIR 3 146 -116 7 1297 283 243 35 7 chr5 93339111 93339165 -59198094 - RMER17C LTR ERVK -136 274 222 7 1297 444 19 0 0 chr5 93339165 93339218 -59198041 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1297 283 243 35 7 chr5 93339218 93339308 -59197951 - RMER17C LTR ERVK -189 221 127 7 1297 484 326 66 20 chr5 93340043 93340240 -59197019 - MIR SINE MIR -34 228 23 7 1297 767 242 12 24 chr5 93340443 93340608 -59196651 + RSINE1 SINE B4 3 165 0 7 1297 1238 92 17 11 chr5 93341345 93341521 -59195738 - B2_Mm2 SINE B2 -18 177 1 7 1297 1259 34 7 0 chr5 93341550 93341696 -59195563 - B1_Mm SINE Alu 0 147 1 7 1297 624 150 0 34 chr5 93342020 93342137 -59195122 + ORR1B1 LTR MaLR 41 153 -241 7 1297 357 24 0 0 chr5 93342142 93342184 -59195075 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1297 666 173 0 0 chr5 93342189 93342322 -59194937 + (TA)n Simple_repeat Simple_repeat 1 133 0 7 1297 911 133 170 6 chr5 93342367 93342549 -59194710 + ORR1B1 LTR MaLR 183 394 0 7 1297 265 335 112 83 chr5 93342816 93343093 -59194166 - L2b LINE L2 -31 3344 3060 7 1297 425 286 0 78 chr5 93345364 93345493 -59191766 - RSINE1 SINE B4 -30 135 17 7 1297 3202 58 5 12 chr5 93345750 93346149 -59191110 - MTB LTR MaLR -4 396 1 7 1297 1134 75 7 0 chr5 93346207 93346353 -59190906 + B1_Mus1 SINE Alu 2 148 0 8 1297 317 283 106 106 chr5 93346741 93347073 -59190186 - MLT1A1 LTR MaLR -17 391 74 8 1297 488 240 8 16 chr5 93347480 93347603 -59189656 + B4A SINE B4 2 123 -169 8 1297 316 261 29 0 chr5 93347689 93347758 -59189501 + RSINE1 SINE B4 82 152 -13 8 1297 268 288 27 14 chr5 93348283 93348357 -59188902 + ID4 SINE ID 3 77 -6 8 1297 257 217 0 0 chr5 93348370 93348416 -59188843 - tRNA-Ala-GCG tRNA tRNA -26 49 4 8 1297 1825 113 197 0 chr5 93348938 93349238 -59188021 - RLTR15 LTR ERVK 0 359 1 8 1297 758 167 0 50 chr5 93349353 93349492 -59187767 + B1_Mur1 SINE Alu 12 143 -6 8 1297 243 88 0 0 chr5 93349492 93349526 -59187733 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 8 1297 341 252 29 10 chr5 93350188 93350305 -59186954 + PB1D9 SINE Alu 2 119 -30 8 1297 1234 48 0 0 chr5 93350401 93350546 -59186713 + B1_Mus2 SINE Alu 1 145 -2 8 1297 216 0 0 0 chr5 93350546 93350570 -59186689 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1297 251 269 103 28 chr5 93350642 93350749 -59186510 + PB1 SINE Alu 3 117 -10 8 1297 641 211 44 19 chr5 93350893 93351018 -59186241 + B2_Mm2 SINE B2 29 159 -36 8 1297 189 0 0 0 chr5 93351018 93351039 -59186220 + (CAAT)n Simple_repeat Simple_repeat 3 23 0 8 1297 641 211 44 19 chr5 93351039 93351072 -59186187 + B2_Mm2 SINE B2 160 191 -4 8 1297 835 251 35 5 chr5 93351097 93351297 -59185962 + ID_B1 SINE B4 15 220 -4 8 1297 1100 288 22 74 chr5 93351419 93351786 -59185473 - MTEa LTR MaLR -19 360 13 8 1297 257 295 103 82 chr5 93351850 93352179 -59185080 - L1MC4a LINE L1 -2 7880 7545 8 1297 558 211 14 111 chr5 93352224 93352273 -59184986 - RSINE1 SINE B4 -31 134 95 8 1297 1192 82 0 0 chr5 93352273 93352420 -59184839 - B1_Mus2 SINE Alu 0 147 1 8 1297 558 211 14 111 chr5 93352420 93352514 -59184745 - RSINE1 SINE B4 -71 94 5 8 1297 232 320 30 30 chr5 93352524 93352624 -59184635 - ID_B1 SINE B4 -121 103 4 8 1297 1156 302 60 40 chr5 93352626 93353230 -59184029 - L1MC4a LINE L1 -325 7557 6942 8 1297 295 297 40 0 chr5 93353510 93353584 -59183675 + PB1D10 SINE Alu 26 102 -15 8 1297 265 324 26 71 chr5 93353609 93353722 -59183537 - PB1D7 SINE Alu -10 110 3 8 1297 298 173 18 80 chr5 93354598 93354711 -59182548 + T-rich Low_complexity Low_complexity 1 106 0 8 1297 389 227 125 0 chr5 93354711 93354799 -59182460 - B1F SINE Alu -2 147 49 8 1297 1083 99 122 0 chr5 93355155 93355327 -59181932 - B2_Mm2 SINE B2 -1 194 2 8 1297 304 208 93 111 chr5 93355334 93355442 -59181817 - L1MCa LINE L1 -4682 1826 1721 8 1297 457 178 26 53 chr5 93355564 93355677 -59181582 - ID_B1 SINE B4 -34 190 81 8 1297 797 86 147 0 chr5 93355832 93355948 -59181311 - B1_Mur4 SINE Alu -15 135 3 8 1297 352 271 49 8 chr5 93356014 93356137 -59181122 - L1MCa LINE L1 -4925 1583 1456 8 1297 240 35 0 0 chr5 93356143 93356172 -59181087 + (TAA)n Simple_repeat Simple_repeat 1 29 0 8 1297 234 188 0 0 chr5 93356284 93356332 -59180927 + T-rich Low_complexity Low_complexity 1 48 0 8 1297 422 250 74 32 chr5 93356453 93356643 -59180616 - L1MCa LINE L1 -5137 1371 1174 8 1297 261 0 0 0 chr5 93357671 93357700 -59179559 + (TC)n Simple_repeat Simple_repeat 2 30 0 8 1297 327 25 0 0 chr5 93357700 93357740 -59179519 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1297 270 0 0 0 chr5 93357900 93357930 -59179329 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1297 338 195 51 13 chr5 93359098 93359176 -59178083 - PB1 SINE Alu 0 127 47 8 1297 1842 145 11 114 chr5 93359389 93359756 -59177503 - ORR1A4 LTR MaLR 0 329 1 8 1297 823 9 0 41 chr5 93360031 93360152 -59177107 + (CCA)n Simple_repeat Simple_repeat 2 117 0 8 1297 325 283 22 0 chr5 93360641 93360733 -59176526 + PB1D10 SINE Alu 22 115 -2 8 1297 521 262 124 80 chr5 93360871 93361156 -59176103 - ORR1E LTR MaLR 0 374 75 8 1297 430 234 65 94 chr5 93361593 93361763 -59175496 - RSINE1 SINE B4 0 165 1 8 1297 272 351 38 28 chr5 93363571 93363689 -59173570 - MLT2E LTR ERVL -1 628 456 8 1297 345 315 11 0 chr5 93364346 93364438 -59172821 + MIRb SINE MIR 116 208 -60 8 1297 398 286 68 7 chr5 93365645 93365793 -59171466 - MER103 DNA DNA -2 164 8 8 1297 22 0 0 0 chr5 93365890 93365912 -59171347 + AT_rich Low_complexity Low_complexity 1 22 0 8 1297 898 248 24 19 chr5 93365920 93366130 -59171129 - B3 SINE B2 -5 211 1 8 1297 250 288 121 63 chr5 93366411 93366585 -59170674 - L2 LINE L2 -348 3071 2888 8 1297 329 191 65 0 chr5 93367707 93367791 -59169468 - ID4 SINE ID -53 99 2 8 1297 1118 221 29 0 chr5 93367808 93368016 -59169243 - B3 SINE B2 -2 214 1 8 1297 378 204 59 30 chr5 93368026 93368127 -59169132 - L1MC1 LINE L1 -18 6315 6212 8 1297 202 246 0 34 chr5 93368636 93368695 -59168564 + CT-rich Low_complexity Low_complexity 1 57 0 8 1297 21 0 0 0 chr5 93372011 93372032 -59165227 + GC_rich Low_complexity Low_complexity 1 21 0 8 1297 322 310 106 0 chr5 93372523 93372636 -59164623 - PB1 SINE Alu -2 125 1 8 1297 315 0 0 0 chr5 93372654 93372689 -59164570 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1297 386 290 46 40 chr5 93372989 93373014 -59164245 + ID_B1 SINE B4 73 224 0 8 1297 683 191 48 0 chr5 93373014 93373140 -59164119 + B1_Mur2 SINE Alu 18 149 0 8 1297 279 0 0 0 chr5 93373225 93373256 -59164003 + (CTTTG)n Simple_repeat Simple_repeat 2 32 0 8 1297 314 250 29 59 chr5 93374443 93374545 -59162714 + B3 SINE B2 1 99 -117 8 1297 218 264 148 55 chr5 93374683 93374811 -59162448 - MIR SINE MIR -35 227 88 8 1297 2264 87 19 3 chr5 93375287 93375576 -59161683 - ORR1A2 LTR MaLR 0 327 36 8 1297 447 19 0 0 chr5 93375576 93375628 -59161631 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1297 279 0 0 0 chr5 93375628 93375658 -59161601 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1297 2264 87 19 3 chr5 93375658 93375689 -59161570 - ORR1A2 LTR MaLR -292 35 2 8 1297 245 200 0 74 chr5 93375863 93375917 -59161342 + ID4 SINE ID 5 54 -29 8 1297 219 307 81 104 chr5 93376341 93376563 -59160696 + MIRb SINE MIR 24 240 -28 8 1297 443 219 0 0 chr5 93376664 93376737 -59160522 - ID4_ SINE ID -8 75 3 8 1297 331 277 132 49 chr5 93376790 93376934 -59160325 - B4A SINE B4 -79 213 55 8 1297 796 314 95 19 chr5 93377523 93378063 -59159196 + L1MB2 LINE L1 5482 6085 -86 8 1297 212 264 42 42 chr5 93378183 93378278 -59158981 + ID_B1 SINE B4 73 167 -57 8 1297 325 187 40 0 chr5 93378221 93378296 -59158963 + PB1D7 SINE Alu 30 107 -13 8 1297 396 0 0 0 chr5 93379134 93379178 -59158081 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1297 956 131 37 24 chr5 93380615 93380779 -59156480 + B2_Mm2 SINE B2 6 171 -24 8 1297 520 219 161 8 chr5 93381024 93381148 -59156111 + RSINE1 SINE B4 2 144 -21 8 1297 306 164 0 116 chr5 93381161 93381230 -59156029 + PB1D9 SINE Alu 58 118 -2 8 1297 252 0 0 0 chr5 93384053 93384081 -59153178 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1297 211 330 61 50 chr5 93384536 93384635 -59152624 - MIRc SINE MIR -88 180 81 8 1297 871 233 31 72 chr5 93385537 93385759 -59151500 - B3 SINE B2 -3 213 1 8 1297 297 308 38 19 chr5 93386025 93386131 -59151128 - L1MEf LINE L1 -4555 2085 1978 8 1297 351 268 262 35 chr5 93386466 93386725 -59150534 - L1MEf LINE L1 -5181 1459 1142 8 1297 240 349 54 40 chr5 93386821 93387045 -59150214 - L1MEf LINE L1 -5555 992 766 8 1297 413 242 106 10 chr5 93388532 93388735 -59148524 + MIR SINE MIR 12 251 -17 8 1297 666 239 89 12 chr5 93389057 93389226 -59148033 + B3A SINE B2 2 183 -15 8 1297 397 242 148 16 chr5 93389838 93389960 -59147299 - B1F1 SINE Alu -11 138 1 8 1297 435 38 0 0 chr5 93391861 93391914 -59145345 + (GGGGA)n Simple_repeat Simple_repeat 1 53 0 8 1297 561 171 72 0 chr5 93392191 93392302 -59144957 + B1_Mur1 SINE Alu 9 127 -22 8 1297 348 111 0 0 chr5 93392793 93392847 -59144412 + (TA)n Simple_repeat Simple_repeat 2 55 0 8 1297 614 246 61 25 chr5 93392898 93393094 -59144165 - B3 SINE B2 -13 203 1 8 1297 432 0 0 0 chr5 93394116 93394164 -59143095 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1297 269 266 0 37 chr5 93394448 93394530 -59142729 - RSINE1 SINE B4 -85 80 2 8 1297 507 217 144 7 chr5 93395412 93395551 -59141708 + RSINE1 SINE B4 4 161 -4 8 1297 453 281 82 16 chr5 93395568 93395789 -59141470 + B4 SINE B4 27 291 -1 8 1297 184 315 37 0 chr5 93395939 93395993 -59141266 - L4 LINE RTE -1029 1000 945 8 1297 23 0 0 0 chr5 93396531 93396554 -59140705 + GC_rich Low_complexity Low_complexity 1 23 0 8 1297 492 232 219 6 chr5 93396834 93397012 -59140247 - Lx8 LINE L1 -122 7351 7136 8 1297 207 204 0 0 chr5 93397159 93397208 -59140051 + T-rich Low_complexity Low_complexity 1 49 0 8 1297 1742 190 53 11 chr5 93397425 93397782 -59139477 + RMER10B LTR ERVL 25 396 -2 8 1297 1551 42 5 10 chr5 93397806 93398000 -59139259 - B2_Mm1a SINE B2 0 193 1 8 1297 1211 74 0 0 chr5 93398111 93398259 -59139000 + B1_Mus1 SINE Alu 1 148 0 8 1297 189 0 0 0 chr5 93398780 93398801 -59138458 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1297 382 323 219 65 chr5 93398895 93399395 -59137864 - LTR41B LTR ERVL -51 707 176 8 1297 656 273 159 19 chr5 93399395 93399716 -59137543 + MER47A DNA MER2_type 1 366 0 8 1297 382 323 219 65 chr5 93399716 93399828 -59137431 - LTR41B LTR ERVL -583 175 2 8 1297 351 0 0 0 chr5 93399980 93400019 -59137240 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1297 717 219 0 0 chr5 93400154 93400421 -59136838 + (TG)n Simple_repeat Simple_repeat 1 267 0 8 1297 257 308 13 0 chr5 93401132 93401210 -59136049 + L1M2 LINE L1 4888 4966 -1177 8 1297 385 239 2 30 chr5 93401284 93401761 -59135498 + (CA)n Simple_repeat Simple_repeat 1 463 0 9 1297 250 246 0 34 chr5 93401807 93401889 -59135370 + L1M2 LINE L1 5415 5487 -804 8 1297 1277 68 6 0 chr5 93402208 93402370 -59134889 + B2_Mm2 SINE B2 2 164 -31 9 1297 336 272 2 23 chr5 93402555 93402675 -59134584 + L1ME1 LINE L1 5561 5677 -502 9 1297 232 273 258 53 chr5 93402677 93402828 -59134431 + Tigger5 DNA MER2_type 24 205 -2201 9 1297 426 296 28 9 chr5 93402842 93402951 -59134308 + Tigger5 DNA MER2_type 2258 2368 -38 9 1297 201 174 0 21 chr5 93402951 93402998 -59134261 + (TTGG)n Simple_repeat Simple_repeat 4 49 0 9 1297 782 166 21 21 chr5 93403014 93403156 -59134103 - B1_Mur4 SINE Alu -8 142 1 9 1297 333 311 56 24 chr5 93403241 93403332 -59133927 + L1ME1 LINE L1 5821 5913 -266 9 1297 2405 95 6 0 chr5 93403332 93403657 -59133602 - ORR1A2 LTR MaLR 0 327 1 9 1297 333 311 56 24 chr5 93403657 93403690 -59133569 + L1ME1 LINE L1 5914 5949 -230 9 1297 365 275 15 98 chr5 93403696 93403715 -59133544 + MT2B LTR ERVL 143 150 -451 9 1297 863 168 7 26 chr5 93403715 93403868 -59133391 + B1_Mur4 SINE Alu 1 150 0 9 1297 235 276 0 17 chr5 93403870 93403929 -59133330 + GA-rich Low_complexity Low_complexity 3 60 0 9 1297 361 333 61 0 chr5 93404297 93404429 -59132830 + MER34 LTR ERV1 336 475 -67 9 1297 984 222 0 42 chr5 93404730 93404946 -59132313 + B3 SINE B2 1 207 -9 9 1297 472 286 106 22 chr5 93404993 93405172 -59132087 + ID_B1 SINE B4 7 200 -24 9 1297 195 100 0 0 chr5 93405177 93405207 -59132052 + (CGAG)n Simple_repeat Simple_repeat 3 32 0 9 1297 266 0 0 29 chr5 93405211 93405246 -59132013 + (GGGGA)n Simple_repeat Simple_repeat 5 38 0 9 1297 272 119 0 17 chr5 93405259 93405319 -59131940 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 9 1297 831 241 77 5 chr5 93405611 93405807 -59131452 + B3 SINE B2 2 211 -5 9 1297 282 335 70 40 chr5 93405845 93406072 -59131187 + L1MEf LINE L1 272 505 -5631 9 1297 273 333 25 50 chr5 93406093 93406254 -59131005 + RSINE1 SINE B4 3 159 -6 9 1297 450 344 65 111 chr5 93406444 93406905 -59130354 + L1MEf LINE L1 627 1066 -5176 9 1297 338 245 114 40 chr5 93406989 93407138 -59130121 + L1MEf LINE L1 1991 2150 -4092 9 1297 667 207 69 8 chr5 93407172 93407344 -59129915 - B3 SINE B2 -18 180 3 9 1297 462 282 57 14 chr5 93407353 93407562 -59129697 - ID_B1 SINE B4 -6 218 1 9 1297 485 315 134 68 chr5 93407596 93407724 -59129535 + L1MEf LINE L1 2200 2316 -3830 9 1297 940 142 7 13 chr5 93407724 93407874 -59129385 + B1_Mur4 SINE Alu 2 150 0 9 1297 485 315 134 68 chr5 93407874 93408052 -59129207 + L1MEf LINE L1 2317 2532 -3614 9 1297 1508 69 16 0 chr5 93408052 93408241 -59129018 - B2_Mm2 SINE B2 -2 193 2 9 1297 485 315 134 68 chr5 93408241 93408298 -59128961 + L1MEf LINE L1 2533 2588 -3558 9 1297 419 270 20 0 chr5 93408409 93408509 -59128750 + PB1D10 SINE Alu 10 111 -6 9 1297 499 291 30 37 chr5 93408515 93408679 -59128580 + RSINE1 SINE B4 1 163 -2 9 1297 231 374 17 6 chr5 93408799 93408974 -59128285 + (CA)n Simple_repeat Simple_repeat 1 177 0 9 1297 258 358 118 22 chr5 93409418 93409818 -59127441 + L1ME2z LINE L1 4815 5252 -894 9 1297 373 280 26 32 chr5 93409853 93410008 -59127251 + L1ME2z LINE L1 5334 5487 -957 9 1297 322 172 0 30 chr5 93410541 93410607 -59126652 + L1ME2z LINE L1 5635 5698 -746 9 1297 310 333 68 42 chr5 93410871 93411062 -59126197 + ORR1E LTR MaLR 158 353 -6 9 1297 241 66 82 0 chr5 93411318 93411379 -59125880 + (TAGA)n Simple_repeat Simple_repeat 2 67 0 9 1297 1928 92 14 41 chr5 93411379 93411673 -59125586 + L1_Mus4 LINE L1 6351 6636 0 9 1297 450 0 0 0 chr5 93411706 93411756 -59125503 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 9 1297 831 216 58 6 chr5 93411769 93411941 -59125318 + B3 SINE B2 1 181 -35 9 1297 253 287 44 33 chr5 93411903 93411993 -59125266 - LTR77 LTR ERV1 -139 483 393 9 1297 229 223 221 57 chr5 93412267 93412548 -59124711 + L1ME2z LINE L1 6116 6442 -2 9 1297 246 295 73 78 chr5 93412532 93412738 -59124521 + L1ME2z LINE L1 6089 6293 -151 9 1297 983 222 35 0 chr5 93413067 93413270 -59123989 - B3 SINE B2 -6 210 1 9 1297 2471 61 6 0 chr5 93413304 93413617 -59123642 - ORR1A2 LTR MaLR -4 323 9 9 1297 261 0 0 0 chr5 93413617 93413646 -59123613 + (TC)n Simple_repeat Simple_repeat 1 29 0 9 1297 450 0 0 0 chr5 93413646 93413695 -59123564 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1297 487 263 30 60 chr5 93413732 93413898 -59123361 - RSINE1 SINE B4 0 165 5 9 1297 202 295 156 10 chr5 93414424 93414520 -59122739 + MIR SINE MIR 97 206 -56 9 1297 332 340 97 87 chr5 93414524 93414739 -59122520 + MER47B DNA MER2_type 2 288 -130 9 1297 361 307 39 10 chr5 93414739 93414841 -59122418 - PB1 SINE Alu -21 106 2 9 1297 332 340 97 87 chr5 93414841 93414937 -59122322 + MER47B DNA MER2_type 289 418 0 9 1297 1392 235 42 27 chr5 93415254 93415586 -59121673 - MTD LTR MaLR -14 405 69 9 1297 1670 158 68 19 chr5 93415595 93415611 -59121648 - ORR1C1 LTR MaLR -39 339 322 9 1297 222 37 0 0 chr5 93415611 93415638 -59121621 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1297 1670 158 68 19 chr5 93415638 93415944 -59121315 - ORR1C1 LTR MaLR -57 321 2 9 1297 310 111 22 0 chr5 93415944 93415989 -59121270 - MTD LTR MaLR -375 46 1 9 1297 644 206 89 34 chr5 93416663 93416809 -59120450 + RSINE1 SINE B4 2 155 -10 9 1297 24 32 0 0 chr5 93416812 93416843 -59120416 + AT_rich Low_complexity Low_complexity 1 31 0 9 1297 566 255 7 27 chr5 93416849 93416998 -59120261 + B1F1 SINE Alu 1 146 -3 9 1297 24 0 0 29 chr5 93416998 93417017 -59120242 + AT_rich Low_complexity Low_complexity 1 19 0 9 1297 609 195 17 0 chr5 93417017 93417135 -59120124 + PB1D9 SINE Alu 1 120 0 9 1297 24 0 0 29 chr5 93417135 93417150 -59120109 + AT_rich Low_complexity Low_complexity 1 15 0 9 1297 369 0 0 0 chr5 93417356 93417397 -59119862 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1297 228 213 0 0 chr5 93417586 93417633 -59119626 + C-rich Low_complexity Low_complexity 1 47 0 9 1297 23 0 0 0 chr5 93418721 93418744 -59118515 + AT_rich Low_complexity Low_complexity 1 23 0 9 1297 816 246 98 10 chr5 93418758 93418981 -59118278 + B4 SINE B4 12 253 -39 9 1297 825 277 133 34 chr5 93419075 93419397 -59117862 + ORR1E LTR MaLR 1 354 -5 9 1297 321 333 9 0 chr5 93419699 93419807 -59117452 - PB1D10 SINE Alu -8 109 1 9 1297 1046 96 81 31 chr5 93419934 93419946 -59117313 - B2_Mm2 SINE B2 -26 169 162 9 1297 188 0 74 0 chr5 93419946 93419973 -59117286 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 9 1297 1046 96 81 31 chr5 93419973 93420121 -59117138 - B2_Mm2 SINE B2 -34 161 1 9 1297 1179 61 0 0 chr5 93420172 93420319 -59116940 - B1_Mm SINE Alu 0 147 1 9 1297 511 254 35 28 chr5 93421170 93421312 -59115947 + MLT1A0 LTR MaLR 222 364 -1 9 1297 272 306 117 0 chr5 93421445 93421541 -59115718 + MIRb SINE MIR 29 138 -138 9 1297 264 304 18 89 chr5 93421682 93421711 -59115548 + MER91B DNA Tip100 14 37 -153 9 1297 2282 168 66 56 chr5 93421711 93422016 -59115243 + RLTR16 LTR ERVK 3 320 -185 9 1297 1051 146 15 30 chr5 93422016 93422214 -59115045 + B2_Mm2 SINE B2 1 195 0 9 1297 2282 168 66 56 chr5 93422214 93422406 -59114853 + RLTR16 LTR ERVK 321 505 0 9 1297 264 304 18 89 chr5 93422406 93422488 -59114771 + MER91B DNA Tip100 38 117 -73 9 1297 307 256 20 109 chr5 93422540 93422641 -59114618 + MLT1H2 LTR MaLR 5 96 -393 9 1297 265 280 134 111 chr5 93422749 93422966 -59114293 - MLT1J LTR MaLR -199 313 92 9 1297 929 234 9 19 chr5 93423052 93423265 -59113994 - B3 SINE B2 -5 211 1 9 1297 1425 68 17 0 chr5 93423291 93423468 -59113791 - B2_Mm2 SINE B2 -14 181 2 9 1297 228 281 118 86 chr5 93423962 93424114 -59113145 - MLT1H LTR MaLR -260 289 133 9 1297 530 245 64 14 chr5 93424114 93424255 -59113004 + B1F1 SINE Alu 2 149 0 9 1297 348 24 0 0 chr5 93424276 93424317 -59112942 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1297 340 333 0 0 chr5 93424342 93424426 -59112833 - MLT1H LTR MaLR -399 150 67 9 1297 1180 77 6 6 chr5 93424788 93424945 -59112314 - B2_Mm2 SINE B2 -9 186 30 9 1297 271 0 21 83 chr5 93424945 93424993 -59112266 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 9 1297 1159 97 0 0 chr5 93424993 93425148 -59112111 - B2_Mm2 SINE B2 -38 157 3 9 1297 249 175 0 0 chr5 93425150 93425190 -59112069 - B3 SINE B2 -176 40 1 9 1297 231 36 0 0 chr5 93425289 93425317 -59111942 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 9 1297 243 315 55 105 chr5 93425346 93425527 -59111732 - ORR1E LTR MaLR -53 306 135 9 1297 239 250 56 0 chr5 93425704 93425776 -59111483 - ID4_ SINE ID -6 77 2 9 1297 538 300 68 17 chr5 93425843 93426135 -59111124 - L1MA6 LINE L1 -230 6070 5764 9 1297 184 295 205 0 chr5 93426154 93426232 -59111027 - L2 LINE L2 -349 3070 2977 9 1297 182 303 39 13 chr5 93426686 93426763 -59110496 - L3 LINE CR1 -307 4182 4104 9 1297 361 115 0 0 chr5 93427326 93427378 -59109881 + PB1D9 SINE Alu 10 61 -59 9 1297 294 210 60 24 chr5 93427378 93427409 -59109850 + ID_B1 SINE B4 91 176 -48 9 1297 35 0 0 0 chr5 93427931 93427966 -59109293 + AT_rich Low_complexity Low_complexity 1 35 0 9 1297 572 145 0 8 chr5 93428207 93428325 -59108934 + (TG)n Simple_repeat Simple_repeat 1 117 0 9 1297 465 76 0 0 chr5 93428324 93428390 -59108869 + (GA)n Simple_repeat Simple_repeat 1 66 0 9 1297 266 224 0 107 chr5 93428993 93429068 -59108191 - MIRc SINE MIR -90 178 112 9 1297 1137 197 37 0 chr5 93429554 93429772 -59107487 - URR1A DNA MER1_type 0 226 1 9 1297 387 0 0 0 chr5 93430689 93430732 -59106527 + (TC)n Simple_repeat Simple_repeat 2 44 0 9 1297 252 0 0 0 chr5 93430732 93430759 -59106500 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1297 306 0 0 0 chr5 93430759 93430792 -59106467 + (GA)n Simple_repeat Simple_repeat 1 34 0 9 1297 365 217 102 11 chr5 93430862 93430950 -59106309 + PB1 SINE Alu 12 107 -20 9 1297 910 221 95 29 chr5 93430958 93431168 -59106091 - ID_B1 SINE B4 0 224 1 9 1297 388 326 52 21 chr5 93431191 93431385 -59105874 - L1MB3 LINE L1 -60 6123 5924 9 1297 400 279 123 38 chr5 93431432 93431644 -59105615 - RMER15 LTR ERVL -24 551 322 9 1297 687 268 49 25 chr5 93431876 93432121 -59105138 - L1MB3 LINE L1 -324 5859 5609 9 1297 988 76 0 0 chr5 93432158 93432289 -59104970 - B2_Mm2 SINE B2 -64 131 1 9 1297 289 222 10 62 chr5 93432704 93432800 -59104459 + L1MB5 LINE L1 5834 5924 -250 9 1297 723 148 54 8 chr5 93433526 93433655 -59103604 - B2_Mm2 SINE B2 -14 181 47 9 1297 1010 138 72 0 chr5 93433700 93433867 -59103392 - B2_Mm2 SINE B2 -16 179 1 9 1297 427 354 19 5 chr5 93433871 93434087 -59103172 + L1MB8 LINE L1 5913 6131 -47 9 1297 241 217 0 0 chr5 93434281 93434327 -59102932 + G-rich Low_complexity Low_complexity 1 46 0 1 1297 381 162 50 0 chr5 93434973 93435053 -59102206 + PB1D10 SINE Alu 13 96 -21 1 1297 356 274 18 28 chr5 93435053 93435082 -59102177 + ID_B1 SINE B4 94 201 -23 1 1297 363 314 0 82 chr5 93435750 93435772 -59101487 + ID SINE ID 66 76 -148 1 1297 737 186 0 8 chr5 93435772 93435891 -59101368 + B1_Mur4 SINE Alu 1 118 -32 1 1297 429 254 0 112 chr5 93435774 93435934 -59101325 + MT2B LTR ERVL 167 308 -293 1 1297 183 100 0 0 chr5 93436484 93436514 -59100745 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1297 1357 95 10 13 chr5 93436515 93436727 -59100532 + B2_Mm2 SINE B2 2 216 0 1 1297 495 225 0 0 chr5 93436739 93436877 -59100382 + (CA)n Simple_repeat Simple_repeat 2 139 0 1 1297 297 312 32 11 chr5 93436977 93437071 -59100188 - B1F1 SINE Alu -53 96 1 1 1297 180 24 0 125 chr5 93438457 93438485 -59098774 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 1297 821 154 88 0 chr5 93438485 93438621 -59098638 - B1_Mus1 SINE Alu 0 148 1 1 1297 180 24 0 125 chr5 93438621 93438640 -59098619 + (TTTA)n Simple_repeat Simple_repeat 3 20 0 1 1297 961 61 105 8 chr5 93438651 93438784 -59098475 - B1_Mm SINE Alu -1 146 1 1 1297 398 325 144 64 chr5 93438785 93438853 -59098406 + LTR82A LTR ERVL 13 84 -788 1 1297 3212 61 2 8 chr5 93438853 93439251 -59098008 - MTA_Mm LTR MaLR 0 396 1 1 1297 398 325 144 64 chr5 93439251 93439458 -59097801 + LTR82A LTR ERVL 85 317 -555 1 1297 751 300 95 0 chr5 93439458 93439663 -59097596 + B4 SINE B4 1 228 -64 1 1297 771 177 19 70 chr5 93439663 93439821 -59097438 + B1_Mur4 SINE Alu 1 150 0 1 1297 751 300 95 0 chr5 93439821 93439868 -59097391 + B4 SINE B4 229 276 -16 1 1297 399 89 0 0 chr5 93439889 93439945 -59097314 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1297 351 115 32 16 chr5 93440071 93440133 -59097126 + MTA_Mm LTR MaLR 130 192 -204 1 1297 973 158 73 0 chr5 93440413 93440590 -59096669 + URR1A DNA MER1_type 37 226 0 1 1297 1269 34 0 0 chr5 93440785 93440932 -59096327 - B1_Mm SINE Alu 0 147 1 1 1297 3581 29 0 2 chr5 93441096 93441510 -59095749 - L1Md_F2 LINE L1 -19 6563 6151 1 1297 1391 89 16 5 chr5 93441615 93441808 -59095451 - B2_Mm2 SINE B2 0 195 1 1 1297 447 215 32 0 chr5 93442057 93442150 -59095109 - U6 snRNA snRNA 0 107 12 1 1297 237 233 164 0 chr5 93442296 93442369 -59094890 - PB1D10 SINE Alu -10 107 23 1 1297 4108 189 8 25 chr5 93442524 93442982 -59094277 + Lx5 LINE L1 6312 6764 -286 1 1297 2165 108 65 0 chr5 93442982 93443289 -59093970 + ORR1A2 LTR MaLR 1 327 0 1 1297 4108 189 8 25 chr5 93443289 93443579 -59093680 + Lx5 LINE L1 6765 7047 -3 1 1297 1182 44 0 0 chr5 93443659 93443796 -59093463 + B1_Mm SINE Alu 1 137 -10 1 1297 1919 170 19 37 chr5 93443851 93444229 -59093030 - ORR1D1 LTR MaLR -2 372 2 1 1297 231 218 18 0 chr5 93444251 93444306 -59092953 + (TATG)n Simple_repeat Simple_repeat 4 59 0 1 1297 984 132 7 0 chr5 93444390 93444534 -59092725 - B1_Mur4 SINE Alu -5 145 1 1 1297 23 33 0 0 chr5 93444649 93444679 -59092580 + AT_rich Low_complexity Low_complexity 1 30 0 1 1297 1251 98 0 0 chr5 93444688 93444852 -59092407 - B2_Mm2 SINE B2 -30 165 2 1 1297 304 316 115 35 chr5 93444863 93445063 -59092196 - L1M5 LINE L1 -303 5821 5606 1 1297 371 111 0 0 chr5 93445567 93445621 -59091638 - B2_Mm2 SINE B2 -94 101 48 1 1297 871 139 131 12 chr5 93445650 93445810 -59091449 - B2_Mm1t SINE B2 -14 179 1 1 1297 2660 70 53 0 chr5 93445822 93446163 -59091096 + RLTR10D LTR ERVK 1 359 0 1 1297 941 215 19 14 chr5 93446491 93446703 -59090556 + B3 SINE B2 2 214 -2 1 1297 561 290 35 0 chr5 93446858 93447003 -59090256 - B3A SINE B2 -48 150 1 1 1297 365 276 87 39 chr5 93447101 93447288 -59089971 + MLT1A0 LTR MaLR 6 236 -129 1 1297 647 97 0 21 chr5 93447318 93447413 -59089846 + BC1_Mm scRNA scRNA 1 93 -59 1 1297 623 224 29 29 chr5 93447464 93447602 -59089657 + MTE2b LTR MaLR 1 138 -241 1 1297 278 298 113 9 chr5 93447977 93448092 -59089167 + MLT1M LTR MaLR 88 214 -458 1 1297 1005 220 25 133 chr5 93448332 93448572 -59088687 - MTE2b LTR MaLR -4 375 187 1 1297 2485 83 3 0 chr5 93448572 93448898 -59088361 - ORR1A2 LTR MaLR 0 327 1 1 1297 1005 198 26 64 chr5 93448898 93449083 -59088176 - MTE2b LTR MaLR -193 186 11 1 1297 286 254 113 0 chr5 93449883 93449954 -59087305 + PB1D10 SINE Alu 32 110 -7 1 1297 940 119 89 53 chr5 93450174 93450343 -59086916 - B2_Mm2 SINE B2 -20 175 1 1 1297 595 188 65 104 chr5 93450555 93450709 -59086550 + B1F SINE Alu 1 148 -1 1 1297 379 351 123 25 chr5 93450946 93451262 -59085997 - L1MC4 LINE L1 0 8042 7696 1 1297 287 250 325 0 chr5 93451293 93451413 -59085846 - LTR16B LTR ERVL -304 159 1 1 1297 701 195 117 0 chr5 93451421 93451575 -59085684 + B3A SINE B2 1 172 -26 1 1297 288 281 0 0 chr5 93451882 93451946 -59085313 - MIR3 SINE MIR -3 205 142 1 1297 578 228 4 4 chr5 93452172 93452702 -59084557 + (TG)n Simple_repeat Simple_repeat 1 530 0 1 1297 714 189 0 0 chr5 93452722 93452897 -59084362 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 1297 244 147 13 13 chr5 93453123 93453199 -59084060 + (TTTG)n Simple_repeat Simple_repeat 1 76 0 1 1297 217 320 80 0 chr5 93453232 93453307 -59083952 - ID4_ SINE ID -1 82 2 1 1297 442 229 95 32 chr5 93453342 93453468 -59083791 + ID_B1 SINE B4 91 224 0 1 1297 412 187 308 0 chr5 93453490 93453597 -59083662 + B1_Mm SINE Alu 6 145 -2 1 1297 250 256 37 0 chr5 93454169 93454251 -59083008 + L1M6 LINE L1 1711 1795 -4701 1 162 339 211 0 62 chr5 93454280 93454361 -59082898 + ID4_ SINE ID 2 79 -4 1 1298 385 83 475 30 chr5 93454645 93454744 -59082515 - B2_Mm2 SINE B2 -5 190 48 1 1298 1331 91 6 11 chr5 93454818 93454996 -59082263 - B2_Mm1t SINE B2 -14 179 3 1 1298 1201 237 128 3 chr5 93455039 93455407 -59081852 + MTD LTR MaLR 5 418 -1 1 1298 442 294 212 30 chr5 93456116 93456516 -59080743 + L1M4 LINE L1 197 669 -5873 1 1298 692 311 105 16 chr5 93456507 93456889 -59080370 + L1M4 LINE L1 4988 5403 -1241 1 1298 277 185 0 18 chr5 93456976 93457031 -59080228 + B3 SINE B2 43 96 -120 1 1298 577 265 8 0 chr5 93457142 93457274 -59079985 + ID_B1 SINE B4 81 213 -11 1 1298 244 197 15 15 chr5 93457875 93457942 -59079317 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1298 271 307 45 11 chr5 93457967 93458056 -59079203 - B1_Mur2 SINE Alu -43 106 15 1 1298 327 65 0 0 chr5 93458065 93458111 -59079148 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1298 1195 62 0 7 chr5 93458144 93458290 -59078969 - B1_Mus2 SINE Alu -1 146 2 1 1298 581 252 42 36 chr5 93458489 93458654 -59078605 - ORR1E LTR MaLR -193 166 1 1 1298 549 0 0 0 chr5 93458828 93458889 -59078370 + (CATAA)n Simple_repeat Simple_repeat 5 65 0 1 1298 360 0 0 0 chr5 93459009 93459049 -59078210 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1298 283 237 145 0 chr5 93459123 93459199 -59078060 - PB1D10 SINE Alu -30 87 1 1 1298 941 213 34 10 chr5 93459483 93459687 -59077572 - B3 SINE B2 -6 210 2 1 1298 204 243 28 14 chr5 93460254 93460325 -59076934 + CT-rich Low_complexity Low_complexity 3 74 0 1 1298 234 0 0 0 chr5 93460420 93460446 -59076813 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1298 283 203 0 135 chr5 93461136 93461210 -59076049 - ID4 SINE ID -11 72 9 1 1298 1067 240 161 75 chr5 93461333 93461508 -59075751 - L1MC3 LINE L1 -153 7632 7463 1 1298 779 188 0 20 chr5 93461508 93461655 -59075604 - B1_Mus1 SINE Alu -4 144 1 1 1298 1067 240 161 75 chr5 93461655 93462025 -59075234 - L1MC3 LINE L1 -323 7462 7040 1 1298 536 275 84 32 chr5 93462251 93462405 -59074854 + RSINE1 SINE B4 4 165 0 1 1298 942 269 140 52 chr5 93462420 93462941 -59074318 + MLT1F1 LTR MaLR 1 567 -2 1 1298 748 247 0 71 chr5 93463409 93463579 -59073680 - RSINE1 SINE B4 0 165 8 1 1298 467 246 16 25 chr5 93463600 93463721 -59073538 + PB1D7 SINE Alu 1 120 0 1 1298 1332 119 0 0 chr5 93463742 93463935 -59073324 + B2_Mm2 SINE B2 2 194 -1 1 1298 649 122 36 18 chr5 93463982 93464149 -59073110 + (TAGA)n Simple_repeat Simple_repeat 4 173 0 1 1298 405 0 0 0 chr5 93464578 93464623 -59072636 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1298 26 0 0 0 chr5 93464991 93465017 -59072242 + AT_rich Low_complexity Low_complexity 1 26 0 1 1298 751 243 17 17 chr5 93465510 93465682 -59071577 - B4 SINE B4 -119 173 2 1 1298 402 241 58 41 chr5 93465779 93465900 -59071359 + B1F SINE Alu 26 148 -1 1 1298 390 284 46 0 chr5 93466030 93466139 -59071120 - RMER15 LTR ERVL -65 510 397 1 1298 786 22 0 0 chr5 93467197 93467289 -59069970 + (TC)n Simple_repeat Simple_repeat 2 93 0 1 1298 198 0 0 0 chr5 93467289 93467310 -59069949 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1298 985 94 0 22 chr5 93467517 93467701 -59069558 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1298 669 184 62 28 chr5 93467910 93468055 -59069204 - B1_Mur4 SINE Alu 0 150 1 1 1298 294 350 48 0 chr5 93468384 93468487 -59068772 + PB1 SINE Alu 3 110 -17 1 1298 1137 94 37 52 chr5 93468593 93468755 -59068504 + B2_Mm1t SINE B2 3 160 -33 1 1298 188 0 0 69 chr5 93468755 93468784 -59068475 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1298 1137 94 37 52 chr5 93468784 93468812 -59068447 + B2_Mm1t SINE B2 161 190 -3 1 1298 400 221 40 50 chr5 93468859 93468959 -59068300 + PB1D10 SINE Alu 13 111 -6 1 1298 234 245 0 0 chr5 93469515 93469564 -59067695 + CT-rich Low_complexity Low_complexity 3 51 0 1 1298 369 0 0 0 chr5 93469905 93469946 -59067313 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1298 369 0 0 0 chr5 93471521 93471562 -59065697 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1298 262 251 0 3 chr5 93475579 93475638 -59061621 - ID4 SINE ID -76 76 19 1 1298 22 0 0 0 chr5 93476321 93476343 -59060916 + AT_rich Low_complexity Low_complexity 1 22 0 1 1298 272 197 40 32 chr5 93476881 93476972 -59060287 - Kanga1d DNA Tc2 -510 99 7 1 1298 399 41 0 0 chr5 93476982 93477031 -59060228 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1 1298 585 215 7 44 chr5 93477035 93477171 -59060088 + B1_Mur2 SINE Alu 2 132 -17 1 1298 243 0 0 0 chr5 93477555 93477582 -59059677 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1298 187 330 91 0 chr5 93477790 93477878 -59059381 - L2 LINE L2 -946 2473 2378 1 1298 363 263 35 9 chr5 93478471 93478586 -59058673 + BC1_Mm scRNA scRNA 8 125 -27 1 1298 183 80 0 0 chr5 93478591 93478616 -59058643 + (GAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1298 907 231 30 39 chr5 93478642 93478845 -59058414 + ID_B1 SINE B4 1 201 -23 1 1298 186 43 0 0 chr5 93478914 93478937 -59058322 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1 1298 267 321 96 30 chr5 93478937 93479104 -59058155 - L2a LINE L2 -14 3412 3235 1 1298 216 191 0 0 chr5 93479262 93479304 -59057955 + (TCTCTG)n Simple_repeat Simple_repeat 3 44 0 1 1298 411 21 0 0 chr5 93479316 93479364 -59057895 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1298 988 163 66 47 chr5 93480189 93480401 -59056858 - B3 SINE B2 0 216 1 1 1298 230 293 111 82 chr5 93480540 93480711 -59056548 + Charlie7 DNA MER1_type 283 458 -2154 1 1298 302 242 32 75 chr5 93480934 93481037 -59056222 - MTEa LTR MaLR -1 378 279 1 1298 465 275 81 43 chr5 93481147 93481356 -59055903 + Charlie20a DNA Charlie 88 304 -503 1 1298 295 291 35 11 chr5 93481682 93481769 -59055490 + RSINE1 SINE B4 4 92 -73 1 1298 360 370 126 19 chr5 93481873 93482135 -59055124 - MLT1J LTR MaLR 0 512 223 1 1298 389 325 73 0 chr5 93482166 93482289 -59054970 + ID_B1 SINE B4 84 215 -9 1 1298 254 79 25 62 chr5 93482304 93482385 -59054874 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1298 274 241 163 54 chr5 93482461 93482553 -59054706 - RSINE1 SINE B4 -17 148 47 1 1298 454 327 6 39 chr5 93482602 93482758 -59054501 - MLT1J LTR MaLR -314 198 48 1 1298 323 180 0 104 chr5 93483316 93483508 -59053751 + (TTAG)n Simple_repeat Simple_repeat 1 172 0 1 1298 849 287 48 0 chr5 93483520 93483580 -59053679 - B4A SINE B4 -10 282 217 1 1298 285 29 0 0 chr5 93483580 93483614 -59053645 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1298 849 287 48 0 chr5 93483614 93483821 -59053438 - B4A SINE B4 -76 216 3 1 1298 465 242 314 26 chr5 93484123 93484404 -59052855 + L1MB8 LINE L1 5643 6003 -175 1 1298 501 62 0 0 chr5 93484588 93484653 -59052606 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1298 833 204 0 0 chr5 93484667 93484814 -59052445 - B1_Mus1 SINE Alu 0 148 2 1 1298 1133 68 7 7 chr5 93484839 93484986 -59052273 - B1_Mm SINE Alu 0 147 1 1 1298 18496 56 36 46 chr5 93485102 93485208 -59052051 - MusHAL1 LINE L1 -1 3352 3240 1 1298 942 128 0 0 chr5 93485208 93485357 -59051902 + (TTC)n Simple_repeat Simple_repeat 2 150 0 1 1298 854 119 66 15 chr5 93485359 93485495 -59051764 - B1_Mus1 SINE Alu -4 144 2 1 1298 18496 56 36 46 chr5 93485495 93485643 -59051616 - MusHAL1 LINE L1 -114 3239 3148 1 1298 1449 135 79 66 chr5 93485643 93485961 -59051298 - RLTRETN_Mm LTR ERVK 0 322 1 1 1298 1108 80 0 0 chr5 93485961 93486099 -59051160 - B1_Mm SINE Alu -6 141 4 1 1298 18496 56 36 46 chr5 93486099 93486925 -59050334 - MusHAL1 LINE L1 -206 3147 2327 1 1298 699 75 0 0 chr5 93486925 93487019 -59050240 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 1 1298 18496 56 36 46 chr5 93487019 93488487 -59048772 - MusHAL1 LINE L1 -1027 2326 799 1 1298 257 0 30 0 chr5 93488487 93488520 -59048739 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1 1298 18496 56 36 46 chr5 93488520 93488536 -59048723 - MusHAL1 LINE L1 -2555 157 157 1 1298 1227 35 7 0 chr5 93488536 93488679 -59048580 - B1_Mm SINE Alu -2 145 2 1 1298 18496 77 112 16 chr5 93488679 93489386 -59047873 - MusHAL1 LINE L1 -2555 798 7 1 1298 281 239 104 0 chr5 93489642 93489709 -59047550 - ORR1E LTR MaLR -3 376 303 1 1298 4075 130 119 152 chr5 93489760 93490511 -59046748 - RMER19B LTR ERVK 0 902 245 1 1298 315 0 0 0 chr5 93490511 93490546 -59046713 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1298 4075 130 119 152 chr5 93490546 93490727 -59046532 - RMER19B LTR ERVK -658 244 2 1 1298 400 327 78 34 chr5 93490729 93490935 -59046324 - ORR1E LTR MaLR -144 215 1 1 1298 1216 218 134 96 chr5 93491061 93491574 -59045685 + RMER16 LTR ERVK 1 533 0 1 1298 429 256 107 0 chr5 93491625 93491746 -59045513 + ID_B1 SINE B4 80 213 -11 1 1298 216 97 0 0 chr5 93491747 93491778 -59045481 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1 1298 782 51 0 0 chr5 93491832 93491930 -59045329 - B1_Mus2 SINE Alu -2 145 48 1 1298 309 209 48 117 chr5 93491873 93491976 -59045283 - RLTR25B LTR ERVK -519 509 414 1 1298 781 265 14 24 chr5 93492357 93492566 -59044693 - B3 SINE B2 -7 209 3 1 1298 23 0 0 0 chr5 93492577 93492600 -59044659 + AT_rich Low_complexity Low_complexity 1 23 0 1 1298 479 234 11 0 chr5 93492616 93492710 -59044549 - RSINE1 SINE B4 -60 105 11 1 1298 1292 27 0 0 chr5 93493228 93493375 -59043884 + B1_Mm SINE Alu 1 147 0 1 1298 503 311 43 0 chr5 93493617 93493781 -59043478 + ID_B1 SINE B4 51 221 -3 1 1298 207 0 0 0 chr5 93493829 93493852 -59043407 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1 1298 1154 68 0 7 chr5 93493860 93494007 -59043252 - B1_Mm SINE Alu 0 147 2 1 1298 780 257 20 20 chr5 93494405 93494600 -59042659 - B3 SINE B2 -12 204 10 1 1298 698 232 16 0 chr5 93494623 93494748 -59042511 + B1_Mur1 SINE Alu 1 127 -22 1 1298 836 235 80 15 chr5 93495454 93495653 -59041606 + B3 SINE B2 1 212 -4 1 1298 2985 20 2 176 chr5 93495830 93496302 -59040957 + RLTR10 LTR ERVK 1 390 0 1 1298 17499 21 0 4 chr5 93496312 93498263 -59038996 + RLTR10-int LTR ERVK 41 1984 -3 1 1298 2985 20 2 176 chr5 93498265 93498737 -59038522 + RLTR10 LTR ERVK 1 390 0 1 1298 2265 34 0 0 chr5 93498747 93499010 -59038249 + RLTR10-int LTR ERVK 41 303 -1684 1 1298 215 278 19 0 chr5 93499208 93499262 -59037997 + GA-rich Low_complexity Low_complexity 6 60 0 1 1298 744 270 102 13 chr5 93499467 93499692 -59037567 + B4A SINE B4 1 245 -47 1 1298 501 240 16 31 chr5 93499753 93499882 -59037377 - RLTR22_Mur LTR ERVK -134 1714 1588 1 1298 287 216 0 0 chr5 93499947 93499998 -59037261 - RLTR22_Mur LTR ERVK -1045 803 753 1 1298 1203 167 8 31 chr5 93500000 93500260 -59036999 - RLTR22_Mur LTR ERVK -1098 750 497 1 1298 409 177 71 20 chr5 93500373 93500471 -59036788 + RLTR23 LTR ERV1 328 430 0 2 1298 315 0 0 0 chr5 93500541 93500576 -59036683 + (GA)n Simple_repeat Simple_repeat 2 36 0 3 1298 1115 109 63 6 chr5 93500638 93500765 -59036494 + B2_Mm1t SINE B2 1 136 -57 4 1298 213 39 0 0 chr5 93500765 93500791 -59036468 + (CCA)n Simple_repeat Simple_repeat 1 26 0 5 1298 1115 109 63 6 chr5 93500791 93500838 -59036421 + B2_Mm1t SINE B2 137 185 -8 4 1298 312 291 87 10 chr5 93500857 93500961 -59036298 + PB1D10 SINE Alu 1 112 -5 6 1298 1774 194 108 32 chr5 93500988 93501368 -59035891 + RLTR12A LTR ERVK 6 429 -139 7 1298 1300 77 42 32 chr5 93501368 93501557 -59035702 + B2_Mm2 SINE B2 2 192 -3 8 1298 1774 194 108 32 chr5 93501557 93501650 -59035609 + RLTR12A LTR ERVK 430 515 -53 7 1298 347 0 23 0 chr5 93501741 93501784 -59035475 + (TAA)n Simple_repeat Simple_repeat 2 45 0 9 1298 974 111 102 28 chr5 93501837 93502013 -59035246 - B2_Mm2 SINE B2 -6 189 1 1 1298 675 37 0 0 chr5 93502023 93502105 -59035154 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1 1298 881 200 92 5 chr5 93502118 93502314 -59034945 - B3 SINE B2 0 216 4 1 1298 612 141 8 16 chr5 93502338 93502461 -59034798 + CT-rich Low_complexity Low_complexity 3 124 0 1 1298 566 280 6 39 chr5 93502469 93502625 -59034634 - RSINE1 SINE B4 0 165 15 1 1298 1681 184 6 31 chr5 93503274 93503627 -59033632 + ORR1C2 LTR MaLR 1 344 -40 1 1298 206 222 0 0 chr5 93504199 93504235 -59033024 + polypurine Low_complexity Low_complexity 4 39 0 1 1298 504 152 141 0 chr5 93504972 93505071 -59032188 - MTE2a LTR MaLR -1 378 266 1 1298 314 272 42 37 chr5 93505084 93505275 -59031984 - RLTR15 LTR ERVK -3 356 165 1 1298 448 205 92 43 chr5 93505330 93505493 -59031766 - RLTR15 LTR ERVK -188 171 1 1 1298 294 306 35 104 chr5 93505542 93505585 -59031674 - MTE2a LTR MaLR -174 233 190 1 1298 3448 33 2 0 chr5 93505585 93505980 -59031279 - MTA_Mm LTR MaLR 0 396 1 1 1298 447 291 139 19 chr5 93505980 93506176 -59031083 - MTE2a LTR MaLR -206 213 1 1 1298 723 320 123 28 chr5 93506381 93506780 -59030479 + MLT1F LTR MaLR 6 442 -106 2 1298 977 75 38 6 chr5 93507952 93508482 -59028777 + (TCTA)n Simple_repeat Simple_repeat 1 547 0 2 1298 431 322 11 50 chr5 93508535 93508715 -59028544 + B4 SINE B4 2 174 -118 2 1298 898 116 64 14 chr5 93508944 93509084 -59028175 - B1_Mus1 SINE Alu 0 148 2 2 1298 203 0 0 36 chr5 93509107 93509135 -59028124 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1298 501 220 340 65 chr5 93509282 93509526 -59027733 - RMER13A LTR ERVK 0 860 550 2 1298 1442 107 0 9 chr5 93509568 93509786 -59027473 - RMER13A LTR ERVK -644 216 1 2 1298 1400 79 5 26 chr5 93510102 93510297 -59026962 - B2_Mm2 SINE B2 -3 192 2 2 1298 390 253 66 0 chr5 93510697 93510788 -59026471 + B1F1 SINE Alu 2 98 -51 2 1298 2003 135 56 6 chr5 93510850 93511192 -59026067 - RLTR15 LTR ERVK 0 359 1 2 1298 2088 150 74 64 chr5 93511215 93511699 -59025560 - RLTR12B LTR ERVK -39 489 1 3 1298 463 220 224 12 chr5 93511970 93512140 -59025119 + ID_B1 SINE B4 2 207 -17 3 1298 650 264 145 36 chr5 93512312 93512913 -59024346 - L1ME1 LINE L1 -125 6039 5321 3 1298 1057 239 97 30 chr5 93512988 93513358 -59023901 - MTE2a LTR MaLR -2 417 23 3 1298 302 308 53 42 chr5 93513395 93513490 -59023769 - PB1D10 SINE Alu -9 108 13 3 1298 249 262 0 0 chr5 93513529 93513590 -59023669 - PB1D10 SINE Alu -35 82 22 3 1298 359 137 0 206 chr5 93514847 93514939 -59022320 - ID4_ SINE ID -7 76 4 3 1298 482 304 114 71 chr5 93514982 93515057 -59022202 - B4A SINE B4 0 292 214 3 1298 2162 184 106 15 chr5 93515057 93515538 -59021721 + RLTR11A2 LTR ERVK 1 525 -2 3 1298 482 304 114 71 chr5 93515538 93515615 -59021644 - B4A SINE B4 -79 213 131 3 1298 1175 102 0 6 chr5 93515615 93515793 -59021466 + (TTC)n Simple_repeat Simple_repeat 1 177 0 3 1298 1166 76 0 0 chr5 93515794 93515938 -59021321 - B1_Mm SINE Alu -2 145 2 4 1298 482 304 114 71 chr5 93515938 93516062 -59021197 - B4A SINE B4 -162 130 1 3 1298 246 346 102 34 chr5 93516106 93516399 -59020860 + L1M5 LINE L1 4527 4839 -1307 4 1298 232 132 0 0 chr5 93516466 93516504 -59020755 + L1MD LINE L1 4855 4892 -1254 4 1298 234 0 0 0 chr5 93516636 93516662 -59020597 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 4 1298 243 0 0 0 chr5 93516662 93516689 -59020570 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1298 430 318 53 0 chr5 93516690 93516822 -59020437 - RSINE1 SINE B4 -24 141 3 4 1298 308 272 63 11 chr5 93516839 93516955 -59020304 + B1F2 SINE Alu 1 126 -1 4 1298 267 272 164 48 chr5 93516965 93517154 -59020105 + L1MC LINE L1 5051 5261 -885 4 1298 422 273 102 0 chr5 93517211 93517339 -59019920 + B1F2 SINE Alu 1 141 -8 4 1298 255 279 130 15 chr5 93517381 93517512 -59019747 + L1M5 LINE L1 5338 5483 -696 4 1298 1215 236 80 69 chr5 93517654 93518108 -59019151 - L1MB8 LINE L1 -233 5945 5482 4 1298 660 200 72 22 chr5 93518108 93518246 -59019013 - B1_Mur2 SINE Alu -2 147 3 5 1298 1215 236 80 69 chr5 93518246 93518315 -59018944 - L1MB8 LINE L1 -697 5481 5416 4 1298 1094 259 71 34 chr5 93518475 93518673 -59018586 - L1MB8 LINE L1 -1459 4687 4480 4 1298 294 254 13 66 chr5 93518673 93518749 -59018510 + ID4_ SINE ID 1 72 -11 5 1298 1094 259 71 34 chr5 93518749 93519054 -59018205 - L1MB8 LINE L1 -1667 4479 4165 4 1298 243 0 0 0 chr5 93519160 93519187 -59018072 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 5 1298 375 119 0 33 chr5 93519187 93519248 -59018011 - B1_Mur2 SINE Alu -14 135 77 5 1298 290 252 39 19 chr5 93519297 93519451 -59017808 + T-rich Low_complexity Low_complexity 5 161 0 5 1298 262 291 83 28 chr5 93520056 93520201 -59017058 - RMER15 LTR ERVL -12 563 411 5 1298 24 0 0 0 chr5 93521793 93521817 -59015442 + AT_rich Low_complexity Low_complexity 1 24 0 5 1298 21 0 0 0 chr5 93522438 93522459 -59014800 + GC_rich Low_complexity Low_complexity 1 21 0 5 1298 216 0 0 0 chr5 93523223 93523247 -59014012 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1298 291 130 0 0 chr5 93525027 93525081 -59012178 + (A)n Simple_repeat Simple_repeat 1 54 0 5 1298 239 224 105 0 chr5 93525270 93525346 -59011913 - ID SINE ID -139 85 2 6 1298 288 102 34 0 chr5 93528568 93528627 -59008632 - RLTR11B LTR ERVK -165 288 228 6 1298 215 314 9 105 chr5 93529187 93529301 -59007958 - ID_B1 SINE B4 -38 186 84 6 1298 474 273 177 49 chr5 93529497 93529763 -59007496 - ORR1E LTR MaLR -11 348 49 6 1298 214 322 100 0 chr5 93531313 93531403 -59005856 + PB1D7 SINE Alu 2 100 -20 6 1298 662 24 12 0 chr5 93532370 93532454 -59004805 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 6 1298 734 83 63 40 chr5 93532454 93532580 -59004679 - B2_Mm2 SINE B2 -35 160 32 6 1298 372 273 70 0 chr5 93533647 93533775 -59003484 - Lx8 LINE L1 -412 7061 6925 6 1298 622 281 41 154 chr5 93533907 93534252 -59003007 - Lx8 LINE L1 -10 7463 7158 6 1298 267 31 0 0 chr5 93534288 93534320 -59002939 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1298 1739 16 0 0 chr5 93534320 93534512 -59002747 - B2_Mm1a SINE B2 0 193 2 7 1298 189 74 0 0 chr5 93534986 93535013 -59002246 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1298 355 289 111 28 chr5 93535318 93535535 -59001724 + Tigger13a DNA MER2_type 188 422 -349 7 1298 21 71 0 0 chr5 93535609 93535651 -59001608 + AT_rich Low_complexity Low_complexity 1 42 0 7 1298 592 156 0 68 chr5 93535669 93535786 -59001473 - B1_Mur2 SINE Alu -31 118 10 7 1298 1093 73 0 0 chr5 93536325 93536461 -59000798 + B1_Mus2 SINE Alu 2 137 -10 7 1298 320 263 23 109 chr5 93536661 93536789 -59000470 - PB1D10 SINE Alu 0 117 1 7 1298 477 220 0 0 chr5 93537003 93537112 -59000147 + GA-rich Low_complexity Low_complexity 4 112 0 7 1298 675 104 0 0 chr5 93537117 93537223 -59000036 + (TG)n Simple_repeat Simple_repeat 1 106 0 7 1298 417 304 40 26 chr5 93537223 93537375 -58999884 - B3A SINE B2 -44 154 1 7 1298 489 227 36 9 chr5 93537560 93537671 -58999588 + ID_B1 SINE B4 110 223 -1 8 1298 368 286 4 53 chr5 93538139 93538310 -58998949 + MER3 DNA MER1_type 13 171 -38 8 1298 691 188 33 2 chr5 93538333 93538485 -58998774 - B3 SINE B2 -21 195 27 8 1298 272 270 0 0 chr5 93538507 93538581 -58998678 + MER3 DNA MER1_type 135 208 -1 8 1298 347 293 80 16 chr5 93538640 93538765 -58998494 - B1F SINE Alu -9 140 8 8 1298 235 302 67 77 chr5 93538692 93538796 -58998463 - B4A SINE B4 -125 167 65 8 1298 309 197 0 0 chr5 93539130 93539201 -58998058 + (CCA)n Simple_repeat Simple_repeat 1 71 0 8 1298 941 174 0 20 chr5 93540838 93540990 -58996269 - B1_Mur3 SINE Alu 0 149 1 8 1298 809 156 73 28 chr5 93541524 93541702 -58995557 + B3 SINE B2 1 186 -30 8 1298 238 316 36 36 chr5 93541923 93542061 -58995198 - Charlie8 DNA MER1_type -2287 141 4 8 1298 520 269 103 16 chr5 93542149 93542334 -58994925 - ID_B1 SINE B4 -13 211 11 8 1298 886 149 0 0 chr5 93542359 93542493 -58994766 + B1_Mur4 SINE Alu 4 137 -13 9 1298 240 35 0 0 chr5 93542493 93542522 -58994737 + (CAAAC)n Simple_repeat Simple_repeat 5 33 0 9 1298 257 375 0 22 chr5 93543338 93543428 -58993831 + PB1D10 SINE Alu 8 95 -22 9 1298 180 0 0 0 chr5 93544414 93544434 -58992825 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 9 1298 271 272 41 52 chr5 93544531 93544628 -58992631 - PB1D7 SINE Alu -24 96 1 9 1298 209 33 33 0 chr5 93544661 93544691 -58992568 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1298 252 269 33 133 chr5 93544708 93544828 -58992431 - PB1D10 SINE Alu -9 108 1 9 1298 761 37 93 0 chr5 93545359 93545466 -58991793 - B2_Mm2 SINE B2 -77 118 2 9 1298 546 16 0 0 chr5 93547963 93548026 -58989233 + (CAG)n Simple_repeat Simple_repeat 1 63 0 9 1298 1234 155 8 64 chr5 93548070 93548212 -58989047 + URR1B DNA MER1_type 1 143 -82 9 1298 1410 60 0 47 chr5 93548212 93548405 -58988854 + B2_Mm2 SINE B2 2 185 -10 1 1298 1234 155 8 64 chr5 93548405 93548497 -58988762 + URR1B DNA MER1_type 144 222 -3 9 1298 475 266 27 40 chr5 93548688 93548837 -58988422 - B1_Mur1 SINE Alu -2 147 1 1 1298 198 0 0 0 chr5 93549192 93549214 -58988045 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1298 499 274 7 7 chr5 93549310 93549446 -58987813 - ID_B1 SINE B4 0 224 89 1 1298 200 216 0 0 chr5 93549666 93549703 -58987556 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1298 243 283 154 35 chr5 93550058 93550201 -58987058 - MIR3 SINE MIR -11 197 38 1 1298 441 286 56 43 chr5 93550674 93550908 -58986351 - Charlie1a DNA MER1_type -141 1314 1078 1 1298 294 160 15 5 chr5 93550952 93551017 -58986242 - ID4 SINE ID -69 83 21 1 1298 306 50 0 0 chr5 93551305 93551345 -58985914 + (ATTG)n Simple_repeat Simple_repeat 4 43 0 1 1298 670 246 0 0 chr5 93551345 93551479 -58985780 - B1_Mur2 SINE Alu -14 135 2 1 1298 697 222 85 25 chr5 93551489 93551688 -58985571 - B3 SINE B2 -5 211 1 1 1298 312 175 0 0 chr5 93551992 93552055 -58985204 + (ATGGTG)n Simple_repeat Simple_repeat 6 68 0 1 1298 23 54 0 0 chr5 93552717 93552754 -58984505 + AT_rich Low_complexity Low_complexity 1 37 0 1 1298 237 286 71 83 chr5 93552820 93552904 -58984355 - B3A SINE B2 -114 84 2 1 1298 236 267 0 0 chr5 93552969 93553029 -58984230 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1298 412 243 36 9 chr5 93553451 93553563 -58983696 - PB1D10 SINE Alu -1 116 2 1 1298 1032 128 0 7 chr5 93554256 93554406 -58982853 + B1_Mur4 SINE Alu 2 150 0 1 1298 741 213 89 25 chr5 93554981 93555183 -58982076 + B3 SINE B2 1 215 -1 1 1298 28 0 0 0 chr5 93556247 93556275 -58980984 + AT_rich Low_complexity Low_complexity 1 28 0 1 1298 29 0 0 0 chr5 93556605 93556634 -58980625 + AT_rich Low_complexity Low_complexity 1 29 0 1 1298 186 43 0 0 chr5 93556748 93556771 -58980488 + (C)n Simple_repeat Simple_repeat 1 23 0 1 1298 981 305 122 47 chr5 93557615 93558189 -58979070 + MLT1E3 LTR MaLR 8 624 0 1 1298 232 104 0 59 chr5 93561848 93561899 -58975360 + CT-rich Low_complexity Low_complexity 3 50 0 1 1298 270 0 0 0 chr5 93561998 93562028 -58975231 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1298 194 256 120 22 chr5 93563084 93563176 -58974083 - MIR3 SINE MIR -104 104 4 1 1298 184 364 0 48 chr5 93563176 93563265 -58973994 - L4 LINE RTE -1773 256 173 1 1298 253 319 32 11 chr5 93564188 93564283 -58972976 + MIR SINE MIR 42 138 -124 1 1298 1438 78 16 10 chr5 93565238 93565431 -58971828 - B2_Mm2 SINE B2 0 195 2 1 1298 835 271 38 17 chr5 93566744 93566984 -58970275 + B4A SINE B4 44 288 -4 1 1298 462 65 0 0 chr5 93567051 93567113 -58970146 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1298 324 0 0 0 chr5 93567113 93567148 -58970111 + (GA)n Simple_repeat Simple_repeat 2 37 0 1 1298 27 0 0 0 chr5 93567717 93567744 -58969515 + AT_rich Low_complexity Low_complexity 1 27 0 1 1298 2266 128 152 57 chr5 93567829 93568303 -58968956 - MURVY-LTR LTR ERV1 0 519 1 1 1298 1194 158 13 63 chr5 93568941 93569178 -58968081 + URR1B DNA MER1_type 1 225 0 1 1298 234 302 109 36 chr5 93570765 93570875 -58966384 - MLT1D LTR MaLR -147 358 241 1 1298 680 117 9 19 chr5 93571011 93571116 -58966143 + B3 SINE B2 1 104 -112 1 1298 227 296 154 70 chr5 93571116 93571166 -58966093 + B4A SINE B4 1 168 -124 1 1298 421 316 124 5 chr5 93571166 93571360 -58965899 + B4A SINE B4 2 218 -74 1 1298 459 0 0 0 chr5 93571394 93571445 -58965814 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1298 262 151 526 0 chr5 93573303 93573394 -58963865 + URR1B DNA MER1_type 1 139 -86 1 1298 986 107 272 17 chr5 93573546 93573726 -58963533 + URR1B DNA MER1_type 1 225 0 1 1298 481 270 35 0 chr5 93573773 93573888 -58963371 + B1_Mur1 SINE Alu 2 120 -29 1 1298 376 182 284 0 chr5 93573917 93574005 -58963254 + PB1D9 SINE Alu 1 113 -7 1 1298 423 0 0 0 chr5 93574869 93574916 -58962343 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1298 180 319 95 42 chr5 93575535 93575630 -58961629 + MIRm SINE MIR 173 272 -4 1 1298 214 171 0 68 chr5 93576457 93576501 -58960758 + G-rich Low_complexity Low_complexity 3 43 0 1 1298 332 336 64 46 chr5 93576579 93576797 -58960462 + MIRb SINE MIR 46 267 -1 1 1298 239 246 70 0 chr5 93576998 93577055 -58960204 - ID SINE ID -153 71 11 1 1298 256 288 124 9 chr5 93577070 93577175 -58960084 - PB1D10 SINE Alu 0 117 1 1 1298 531 0 0 0 chr5 93577877 93577936 -58959323 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 1 1298 1408 68 17 0 chr5 93577937 93578114 -58959145 - B2_Mm2 SINE B2 -15 180 1 1 1298 198 0 0 0 chr5 93580800 93580822 -58956437 + (C)n Simple_repeat Simple_repeat 1 22 0 1 1298 365 260 47 19 chr5 93581892 93581998 -58955261 - ID_B1 SINE B4 -22 202 94 1 1298 196 329 45 77 chr5 93582009 93582164 -58955095 - MIR SINE MIR -102 160 11 1 1298 327 302 94 8 chr5 93582406 93582523 -58954736 + ID_B1 SINE B4 90 216 -8 1 1298 811 288 9 48 chr5 93582563 93582793 -58954466 + B4 SINE B4 70 290 -2 1 1298 384 59 0 0 chr5 93583454 93583505 -58953754 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1298 224 122 0 24 chr5 93584977 93585019 -58952240 + (CTA)n Simple_repeat Simple_repeat 3 43 0 1 1299 217 271 90 12 chr5 93586132 93586245 -58951014 + MIRm SINE MIR 83 196 -12 1 1299 528 256 43 0 chr5 93586509 93586626 -58950633 - ID_B1 SINE B4 -19 205 84 1 1299 270 0 0 0 chr5 93586898 93586928 -58950331 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1299 2138 85 12 68 chr5 93587194 93587534 -58949725 - ORR1A4 LTR MaLR -8 321 1 1 1299 214 262 0 0 chr5 93587643 93587685 -58949574 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1299 315 250 19 103 chr5 93587933 93588040 -58949219 + MT2B LTR ERVL 160 257 -344 1 1299 646 167 88 0 chr5 93587948 93588062 -58949197 + B1_Mur2 SINE Alu 13 136 -13 1 1299 215 300 154 74 chr5 93588064 93588226 -58949033 - B3A SINE B2 -10 188 14 1 1299 426 323 63 19 chr5 93588745 93589013 -58948246 - Charlie5 DNA MER1_type -198 2426 2147 1 1299 797 39 0 83 chr5 93589148 93589400 -58947859 + (CCCTAA)n Simple_repeat Simple_repeat 1 231 0 1 1299 25 0 0 0 chr5 93589449 93589474 -58947785 + AT_rich Low_complexity Low_complexity 1 25 0 1 1299 659 268 103 0 chr5 93589474 93589668 -58947591 - Lx3C LINE L1 -34 6942 6729 1 1299 679 210 179 16 chr5 93589692 93589876 -58947383 - B3 SINE B2 -1 215 2 1 1299 576 236 94 29 chr5 93591807 93591977 -58945282 - B3A SINE B2 -16 182 2 1 1299 1114 193 30 5 chr5 93592116 93592319 -58944940 + B3 SINE B2 3 210 -6 1 1299 1436 80 5 5 chr5 93592345 93592534 -58944725 + B2_Mm2 SINE B2 1 189 -6 1 1299 248 125 0 40 chr5 93592558 93592608 -58944651 + Lx4B LINE L1 7007 7054 -4 1 1299 281 210 32 0 chr5 93594543 93594605 -58942654 - MIRc SINE MIR -104 164 101 1 1299 866 182 93 10 chr5 93594913 93595107 -58942152 + B3 SINE B2 1 210 -6 1 1299 739 217 31 0 chr5 93595600 93595729 -58941530 - RSINE1 SINE B4 -29 136 4 1 1299 557 240 75 30 chr5 93595774 93595907 -58941352 + B1_Mur4 SINE Alu 11 149 -1 1 1299 1587 148 149 33 chr5 93596037 93596170 -58941089 - ORR1C1 LTR MaLR -4 374 246 1 1299 452 18 18 0 chr5 93596170 93596227 -58941032 + (CAGG)n Simple_repeat Simple_repeat 3 60 0 1 1299 1587 148 149 33 chr5 93596227 93596428 -58940831 - ORR1C1 LTR MaLR -133 245 3 1 1299 224 213 0 0 chr5 93596565 93596612 -58940647 + GA-rich Low_complexity Low_complexity 6 52 0 1 1299 306 0 0 0 chr5 93598214 93598248 -58939011 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1299 432 0 0 0 chr5 93598248 93598295 -58938964 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1299 31 0 0 0 chr5 93599068 93599099 -58938160 + AT_rich Low_complexity Low_complexity 1 31 0 1 1299 1449 48 26 26 chr5 93599462 93599494 -58937765 - B2_Mm1t SINE B2 0 193 161 1 1299 207 0 0 0 chr5 93599494 93599517 -58937742 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1299 1449 48 26 26 chr5 93599517 93599676 -58937583 - B2_Mm1t SINE B2 -33 160 2 1 1299 207 0 0 0 chr5 93602234 93602257 -58935002 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1299 252 86 0 0 chr5 93602669 93602704 -58934555 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1299 446 209 56 98 chr5 93608074 93608217 -58929042 + MT2B LTR ERVL 128 264 -337 1 1299 1168 28 0 0 chr5 93608111 93608252 -58929007 + B1_Mus1 SINE Alu 8 148 0 1 1299 256 225 290 32 chr5 93608657 93608781 -58928478 + RSINE1 SINE B4 4 159 -6 1 1299 436 250 214 0 chr5 93609700 93609840 -58927419 - B3 SINE B2 -1 215 46 1 1299 383 309 0 0 chr5 93609857 93609941 -58927318 - 7SLRNA srpRNA srpRNA -223 91 8 1 1299 671 100 122 116 chr5 93610526 93610673 -58926586 - B1_Mus1 SINE Alu 0 148 1 1 1299 401 207 24 12 chr5 93610605 93610688 -58926571 - B4 SINE B4 -140 152 69 1 1299 499 313 61 6 chr5 93610689 93610869 -58926390 + L1_Rod LINE L1 3918 4107 -1740 1 1299 21 0 0 0 chr5 93612888 93612909 -58924350 + AT_rich Low_complexity Low_complexity 1 21 0 1 1299 1219 156 29 10 chr5 93613231 93613438 -58923821 + URR1B DNA MER1_type 15 225 0 1 1299 319 309 21 0 chr5 93613880 93613974 -58923285 - PB1D10 SINE Alu -21 96 1 1 1299 366 206 29 0 chr5 93615611 93615679 -58921580 + ID SINE ID 6 75 -149 1 1299 539 157 22 0 chr5 93615972 93616061 -58921198 + B3A SINE B2 2 92 -106 2 1299 219 280 79 61 chr5 93615977 93616091 -58921168 + B4A SINE B4 9 124 -168 2 1299 243 0 0 0 chr5 93616451 93616478 -58920781 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1299 764 243 61 0 chr5 93617320 93617501 -58919758 + B3 SINE B2 2 193 -23 2 1299 454 196 65 47 chr5 93617506 93617598 -58919661 + B1_Mur3 SINE Alu 38 136 -13 2 1299 189 0 0 0 chr5 93617598 93617619 -58919640 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 2 1299 454 196 65 47 chr5 93617619 93617633 -58919626 + B1_Mur3 SINE Alu 137 146 -3 2 1299 354 288 197 21 chr5 93617830 93618018 -58919241 + RMER21B LTR ERV1 347 567 -275 2 1299 757 262 19 0 chr5 93618785 93618945 -58918314 + RSINE1 SINE B4 1 163 -2 2 1299 234 0 0 0 chr5 93619307 93619333 -58917926 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1299 630 254 60 30 chr5 93619577 93619776 -58917483 - ID_B1 SINE B4 -19 205 1 2 1299 1003 232 32 27 chr5 93620799 93621020 -58916239 - ID_B1 SINE B4 0 224 3 2 1299 1433 96 37 0 chr5 93621714 93621902 -58915357 + B2_Mm2 SINE B2 1 195 0 2 1299 322 398 8 0 chr5 93623123 93623241 -58914018 - ORR1E LTR MaLR -240 119 1 2 1299 289 339 40 0 chr5 93623366 93623490 -58913769 + L1MEg1 LINE L1 581 709 -5526 2 1299 343 299 0 13 chr5 93623492 93623570 -58913689 + ID2 SINE ID 3 79 -4 2 1299 350 239 233 23 chr5 93623750 93623883 -58913376 + B3A SINE B2 1 161 -37 2 1299 548 294 6 41 chr5 93624057 93624227 -58913032 + RSINE1 SINE B4 2 165 0 2 1299 1173 63 21 0 chr5 93625342 93625484 -58911775 - B1_Mm SINE Alu -1 146 2 2 1299 186 171 0 0 chr5 93625604 93625645 -58911614 + A-rich Low_complexity Low_complexity 1 41 0 2 1299 187 350 156 11 chr5 93625657 93625836 -58911423 + L3 LINE CR1 4044 4248 -241 2 1299 955 226 62 77 chr5 93625881 93626140 -58911119 - B4 SINE B4 0 292 38 2 1299 444 232 26 35 chr5 93626583 93626699 -58910560 - PB1D10 SINE Alu -2 115 1 2 1299 243 258 67 67 chr5 93627082 93627186 -58910073 + PB1D10 SINE Alu 6 109 -8 2 1299 1092 205 126 89 chr5 93628614 93628940 -58908319 + RMER15 LTR ERVL 238 575 0 2 1299 450 311 87 13 chr5 93629054 93629204 -58908055 + RSINE1 SINE B4 3 163 -2 2 1299 1585 48 37 0 chr5 93629222 93629409 -58907850 + B2_Mm2 SINE B2 2 195 0 2 1299 210 319 29 14 chr5 93630030 93630100 -58907159 + L2a LINE L2 3341 3411 -15 2 1299 946 186 126 0 chr5 93630640 93630823 -58906436 + B3 SINE B2 3 208 -8 2 1299 277 312 72 18 chr5 93631122 93631233 -58906026 - PB1D10 SINE Alu 0 117 1 2 1299 254 289 49 8 chr5 93631950 93632072 -58905187 + L1M4 LINE L1 2905 3031 -3115 2 1299 270 0 0 0 chr5 93632218 93632248 -58905011 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1299 439 248 124 0 chr5 93632261 93632374 -58904885 + ID_B1 SINE B4 69 195 -29 2 1299 23 33 0 0 chr5 93633177 93633207 -58904052 + AT_rich Low_complexity Low_complexity 1 30 0 2 1299 199 260 115 13 chr5 93633976 93634054 -58903205 - MIR SINE MIR -76 186 101 2 1299 213 39 0 0 chr5 93634743 93634769 -58902490 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1299 21 57 0 0 chr5 93634900 93634935 -58902324 + GC_rich Low_complexity Low_complexity 1 35 0 2 1299 258 105 0 0 chr5 93634938 93634976 -58902283 + (TCC)n Simple_repeat Simple_repeat 1 38 0 2 1299 232 312 31 0 chr5 93635360 93635424 -58901835 + polypurine Low_complexity Low_complexity 2 67 0 2 1299 221 0 35 0 chr5 93636464 93636493 -58900766 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2 1299 270 332 181 20 chr5 93636778 93636960 -58900299 - L2b LINE L2 -187 3188 2989 2 1299 186 43 0 0 chr5 93637248 93637271 -58899988 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1299 327 229 296 18 chr5 93637285 93637454 -58899805 + B3 SINE B2 1 216 0 2 1299 302 311 43 18 chr5 93637856 93638020 -58899239 - L1MB8 LINE L1 -84 6094 5927 2 1299 626 184 201 28 chr5 93638115 93638294 -58898965 - B3 SINE B2 -5 211 2 2 1299 208 271 218 61 chr5 93638518 93638683 -58898576 - MIRb SINE MIR -51 217 27 2 1299 662 191 0 0 chr5 93638872 93638977 -58898282 + B1_Mur1 SINE Alu 2 106 -43 2 1299 654 276 0 0 chr5 93638974 93639108 -58898151 + B3 SINE B2 15 148 -68 2 1299 252 0 0 0 chr5 93639109 93639137 -58898122 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1299 1518 156 57 63 chr5 93639297 93639632 -58897627 - Lx7 LINE L1 0 7696 7364 2 1299 24 53 0 0 chr5 93639668 93639706 -58897553 + AT_rich Low_complexity Low_complexity 1 38 0 2 1299 592 95 0 0 chr5 93639744 93639828 -58897431 - URR1B DNA MER1_type 0 225 142 2 1299 393 194 0 14 chr5 93639897 93639970 -58897289 - Lx7 LINE L1 -420 7276 7205 2 1299 357 82 0 0 chr5 93639971 93640020 -58897239 + (T)n Simple_repeat Simple_repeat 1 49 0 2 1299 1232 82 0 0 chr5 93640020 93640167 -58897092 - B1_Mus1 SINE Alu 0 148 2 2 1299 1579 151 29 11 chr5 93640167 93640442 -58896817 - Lx7 LINE L1 -478 7218 6939 2 1299 3283 159 96 20 chr5 93640442 93641236 -58896023 - Lx7 LINE L1 -1291 6405 5530 2 1299 276 91 0 0 chr5 93641512 93641556 -58895703 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1299 270 0 0 0 chr5 93641560 93641590 -58895669 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1299 1122 59 15 0 chr5 93641590 93641725 -58895534 - B1_Mur4 SINE Alu -13 137 1 2 1299 511 199 159 8 chr5 93641849 93641981 -58895278 + B3 SINE B2 2 153 -63 2 1299 286 221 34 34 chr5 93641968 93642057 -58895202 + PB1D10 SINE Alu 29 117 0 2 1299 225 0 0 0 chr5 93642648 93642673 -58894586 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1299 225 0 0 0 chr5 93642714 93642739 -58894520 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2 1299 835 254 5 66 chr5 93642741 93642939 -58894320 - B3A SINE B2 -12 186 1 2 1299 207 0 0 0 chr5 93642950 93642973 -58894286 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1299 685 275 140 46 chr5 93643043 93643458 -58893801 - Lx8 LINE L1 -9 7464 7011 2 1299 769 141 409 0 chr5 93643941 93644090 -58893169 - B3 SINE B2 -2 214 5 2 1299 1854 177 62 24 chr5 93644182 93644552 -58892707 + ORR1C2 LTR MaLR 1 384 0 2 1299 542 303 47 26 chr5 93644792 93644985 -58892274 + MLT1A0 LTR MaLR 21 217 -148 2 1299 387 0 0 0 chr5 93645082 93645125 -58892134 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1299 608 120 10 0 chr5 93645347 93645447 -58891812 + (TCTA)n Simple_repeat Simple_repeat 1 101 0 2 1299 301 312 114 34 chr5 93645570 93645746 -58891513 - MLT1J LTR MaLR -92 420 231 2 1299 371 215 15 0 chr5 93646292 93646357 -58890902 - ID4 SINE ID -16 67 2 2 1299 2057 82 10 64 chr5 93646900 93647213 -58890046 + ORR1A2 LTR MaLR 32 327 0 2 1299 233 189 57 0 chr5 93647292 93647345 -58889914 + CT-rich Low_complexity Low_complexity 3 58 0 2 1299 537 283 20 20 chr5 93647350 93647498 -58889761 - B1F SINE Alu -1 148 1 2 1299 212 260 80 0 chr5 93648090 93648140 -58889119 + MER5A DNA MER1_type 62 115 -74 2 1299 671 309 0 0 chr5 93648432 93648600 -58888659 + B3 SINE B2 1 168 -48 2 1299 244 125 0 0 chr5 93648597 93648637 -58888622 - B2_Mm2 SINE B2 -154 41 2 2 1299 23 78 0 0 chr5 93648854 93648905 -58888354 + AT_rich Low_complexity Low_complexity 1 51 0 2 1299 276 321 0 0 chr5 93649184 93649265 -58887994 - MER57A-int LTR ERV1 -301 5886 5806 2 1299 2840 127 177 16 chr5 93649272 93649776 -58887483 - RMER4B LTR ERVK 0 585 1 2 1299 210 163 0 23 chr5 93649801 93649845 -58887414 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1299 1773 31 0 0 chr5 93650371 93650563 -58886696 + B2_Mm1a SINE B2 2 193 0 2 1299 340 283 9 36 chr5 93651770 93651880 -58885379 + L2 LINE L2 2488 2594 -825 2 1299 746 366 55 62 chr5 93651880 93652351 -58884908 - LTR33 LTR ERVL 0 515 48 2 1299 1361 102 16 16 chr5 93652593 93652782 -58884477 - B2_Mm2 SINE B2 -6 189 1 2 1299 919 170 14 7 chr5 93653269 93653417 -58883842 + B1_Mur4 SINE Alu 2 150 0 2 1299 4843 98 35 5 chr5 93653417 93654065 -58883194 + Lx2 LINE L1 6328 6995 -2 2 1299 380 297 144 0 chr5 93654281 93654392 -58882867 + LTR33 LTR ERVL 256 382 -133 2 1299 237 306 110 9 chr5 93655019 93655128 -58882131 - PB1D7 SINE Alu 0 120 1 2 1299 237 333 71 0 chr5 93655046 93655130 -58882129 - ID_B1 SINE B4 -55 169 80 2 1299 286 42 0 40 chr5 93655166 93655216 -58882043 + (GTGTG)n Simple_repeat Simple_repeat 4 51 0 2 1299 609 310 71 78 chr5 93655223 93655474 -58881785 - B4A SINE B4 -10 282 34 2 1299 1780 192 145 54 chr5 93655474 93655615 -58881644 + RLTR12A LTR ERVK 1 143 -425 2 1299 930 96 0 0 chr5 93655615 93655750 -58881509 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 2 1299 1780 192 145 54 chr5 93655750 93656125 -58881134 + RLTR12A LTR ERVK 144 563 -5 2 1299 609 310 71 78 chr5 93656125 93656156 -58881103 - B4A SINE B4 -259 33 2 2 1299 794 94 49 35 chr5 93656491 93656634 -58880625 - Lx LINE L1 0 6654 6510 2 1299 1464 161 9 0 chr5 93659254 93659477 -58877782 - URR1B DNA MER1_type 0 225 1 2 1299 489 246 74 51 chr5 93659790 93659966 -58877293 + B3A SINE B2 1 180 -18 2 1299 213 160 0 57 chr5 93659990 93660043 -58877216 + T-rich Low_complexity Low_complexity 4 53 0 2 1299 883 215 0 20 chr5 93660044 93660196 -58877063 - B1_Mur1 SINE Alu 0 149 1 2 1299 1001 246 40 0 chr5 93660227 93660426 -58876833 + B3 SINE B2 5 211 -5 2 1299 261 0 0 0 chr5 93661222 93661251 -58876008 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1299 226 296 10 10 chr5 93661301 93661400 -58875859 - L1_Mur3 LINE L1 -483 5397 5299 3 1299 379 258 0 20 chr5 93661728 93661816 -58875443 + MLT1A LTR MaLR 1 87 -287 3 1299 871 165 23 0 chr5 93661816 93661949 -58875310 + B1_Mur4 SINE Alu 2 137 -13 3 1299 390 129 0 0 chr5 93661972 93662034 -58875225 + (GGGA)n Simple_repeat Simple_repeat 4 65 0 3 1299 650 153 118 37 chr5 93662046 93662182 -58875077 + B1_Mur2 SINE Alu 2 148 -1 3 1299 272 296 239 22 chr5 93662208 93662346 -58874913 + MLT1A LTR MaLR 71 238 -127 3 1299 30 0 0 0 chr5 93662993 93663023 -58874236 + AT_rich Low_complexity Low_complexity 1 30 0 3 1299 691 219 86 0 chr5 93663027 93663155 -58874104 - B1_Mur1 SINE Alu -10 139 1 3 1299 667 272 53 62 chr5 93663397 93663605 -58873654 + MLT1B LTR MaLR 1 206 -184 3 1299 909 188 0 26 chr5 93664360 93664513 -58872746 - B1_Mur4 SINE Alu -1 149 1 3 1299 213 121 0 0 chr5 93664531 93664564 -58872695 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 3 1299 267 241 22 78 chr5 93664704 93664794 -58872465 - MLT1J1 LTR MaLR -287 157 73 3 1299 1651 254 101 73 chr5 93665208 93665660 -58871599 - L1MA9 LINE L1 0 6312 5823 3 1299 410 250 26 43 chr5 93665660 93665777 -58871482 - PB1D10 SINE Alu -2 115 1 3 1299 1651 254 101 73 chr5 93665777 93665931 -58871328 - L1MA9 LINE L1 -490 5822 5668 3 1299 450 271 175 21 chr5 93665931 93666074 -58871185 + RSINE1 SINE B4 1 165 0 3 1299 1651 254 101 73 chr5 93666074 93666277 -58870982 - L1MA9 LINE L1 -645 5667 5479 3 1299 771 153 317 6 chr5 93666451 93666615 -58870644 - B3 SINE B2 -1 215 1 3 1299 276 185 0 0 chr5 93666774 93666828 -58870431 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1299 352 300 0 0 chr5 93667403 93667493 -58869766 + RSINE1 SINE B4 3 92 -73 3 1299 7260 79 8 3 chr5 93667493 93668452 -58868807 + L1_Mus4 LINE L1 5673 6636 0 3 1299 238 370 0 24 chr5 93668452 93668535 -58868724 + RSINE1 SINE B4 85 165 0 3 1299 69 72 0 0 chr5 93668612 93668751 -58868508 + AT_rich Low_complexity Low_complexity 1 139 0 3 1299 2589 161 90 6 chr5 93668757 93669226 -58868033 - RLTR18B LTR ERVK -3 509 2 3 1299 232 138 31 0 chr5 93670054 93670119 -58867140 + A-rich Low_complexity Low_complexity 3 69 0 3 1299 224 294 169 22 chr5 93670148 93670332 -58866927 - MIR SINE MIR -40 222 12 3 1299 290 289 77 0 chr5 93671042 93671146 -58866113 + PB1 SINE Alu 16 127 0 3 1299 272 238 23 45 chr5 93671237 93671325 -58865934 + GA-rich Low_complexity Low_complexity 4 89 0 3 1299 225 0 0 0 chr5 93671628 93671653 -58865606 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1299 656 212 58 8 chr5 93671844 93671995 -58865264 - ID_B1 SINE B4 0 224 69 3 1299 1603 203 42 28 chr5 93672076 93672436 -58864823 + MTC LTR MaLR 1 365 -56 3 1299 494 114 101 11 chr5 93672448 93672537 -58864722 + B1_Mur4 SINE Alu 45 141 -9 3 1299 306 0 0 0 chr5 93672537 93672571 -58864688 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1299 228 300 0 0 chr5 93672766 93672826 -58864433 + RMER15 LTR ERVL 403 462 -113 3 1299 254 310 66 46 chr5 93673085 93673237 -58864022 - LTR50 LTR ERVL -638 157 3 3 1299 286 296 59 2 chr5 93673807 93673938 -58863321 - ERVL-B4-int LTR ERVL -894 4820 4621 3 1299 274 323 105 0 chr5 93673974 93674098 -58863161 - ERVL-B4-int LTR ERVL -858 4627 4491 3 1299 1621 163 46 13 chr5 93674101 93674405 -58862854 + ORR1B1 LTR MaLR 71 384 -10 3 1299 706 234 228 5 chr5 93674556 93674766 -58862493 - ORR1D2 LTR MaLR 0 370 113 3 1299 431 137 0 0 chr5 93674766 93674839 -58862420 - ORR1C1 LTR MaLR 0 378 306 3 1299 1754 138 26 105 chr5 93674834 93675112 -58862147 - ORR1C1-int LTR MaLR -1159 350 97 3 1299 4533 96 24 18 chr5 93675112 93675771 -58861488 - Lx LINE L1 -7 6647 5985 3 1299 1754 138 26 105 chr5 93675771 93675872 -58861387 - ORR1C1-int LTR MaLR -1413 96 1 3 1299 1920 149 38 35 chr5 93675874 93676242 -58861017 - ORR1C1 LTR MaLR -2 376 8 3 1299 412 217 94 0 chr5 93676242 93676348 -58860911 - ORR1D2 LTR MaLR -252 118 3 3 1299 407 299 66 0 chr5 93676418 93676555 -58860704 + ID_B1 SINE B4 10 155 -69 3 1299 506 272 6 81 chr5 93676556 93676728 -58860531 + RSINE1 SINE B4 3 161 -4 3 1299 1210 249 14 7 chr5 93676988 93677267 -58859992 - B4A SINE B4 0 292 12 3 1299 567 315 46 83 chr5 93677324 93677649 -58859610 - ORR1E LTR MaLR -26 333 21 3 1299 462 284 153 41 chr5 93677716 93678010 -58859249 - ERVL-B4-int LTR ERVL -2180 3305 2979 3 1299 330 167 0 70 chr5 93678012 93678083 -58859176 + ID4_ SINE ID 7 72 -11 3 1299 561 330 90 57 chr5 93678097 93678855 -58858404 - ERVL-B4-int LTR ERVL -2728 2986 2204 3 1299 384 22 0 0 chr5 93679211 93679256 -58858003 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1299 23 0 0 0 chr5 93679527 93679550 -58857709 + AT_rich Low_complexity Low_complexity 1 23 0 3 1299 412 277 21 0 chr5 93680808 93680902 -58856357 + PB1D10 SINE Alu 2 97 -20 3 1299 790 237 9 79 chr5 93680928 93681157 -58856102 + ID_B1 SINE B4 10 222 -2 3 1299 492 227 22 16 chr5 93681704 93681854 -58855405 - ORR1D2 LTR MaLR 0 370 237 3 1299 185 59 0 56 chr5 93681948 93681984 -58855275 + (TATG)n Simple_repeat Simple_repeat 1 34 0 3 1299 610 260 103 0 chr5 93681986 93682132 -58855127 - RSINE1 SINE B4 -2 163 3 3 1299 438 263 73 22 chr5 93683236 93683372 -58853887 + ID_B1 SINE B4 82 224 0 3 1299 3123 221 82 26 chr5 93683537 93684305 -58852954 + Lx8 LINE L1 6462 7272 -201 3 1299 428 280 6 154 chr5 93684322 93684491 -58852768 + B3 SINE B2 3 146 -70 3 1299 216 97 0 0 chr5 93684491 93684522 -58852737 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1299 24 32 0 0 chr5 93684526 93684557 -58852702 + AT_rich Low_complexity Low_complexity 1 31 0 3 1299 352 188 8 86 chr5 93684561 93684689 -58852570 + Lx8 LINE L1 7356 7473 0 3 1299 455 148 287 0 chr5 93685478 93685579 -58851680 + RSINE1 SINE B4 2 131 -34 3 1299 390 91 0 0 chr5 93685591 93685646 -58851613 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1299 1959 193 125 149 chr5 93685882 93686504 -58850755 + RMER19C LTR ERVK 1 607 -4 3 1299 708 161 0 9 chr5 93686504 93686617 -58850642 - L1_Mur2 LINE L1 -661 5216 5105 3 1299 7533 111 31 7 chr5 93686605 93688430 -58848829 + Lx LINE L1 4784 6654 0 3 1299 425 234 54 9 chr5 93689168 93689280 -58847979 + B4A SINE B4 167 283 -9 3 1299 929 167 0 0 chr5 93689612 93689750 -58847509 - B1_Mus2 SINE Alu -7 140 3 3 1299 843 65 0 0 chr5 93689832 93689955 -58847304 + (GA)n Simple_repeat Simple_repeat 2 124 0 3 1299 325 267 111 45 chr5 93690260 93690449 -58846810 + MLT1F LTR MaLR 342 489 0 3 1299 258 262 80 33 chr5 93690474 93690624 -58846635 + Arthur1 DNA Tip100 3789 3945 -2 3 1299 180 0 0 0 chr5 93693081 93693101 -58844158 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1299 225 0 0 0 chr5 93693346 93693371 -58843888 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1299 346 181 38 9 chr5 93694097 93694203 -58843056 + GA-rich Low_complexity Low_complexity 2 110 0 3 1299 453 222 71 0 chr5 93694489 93694588 -58842671 - PB1D7 SINE Alu -14 106 1 3 1299 614 224 6 64 chr5 93698487 93698644 -58838615 - B1_Mur3 SINE Alu 0 149 2 3 1299 196 204 111 0 chr5 93698665 93698719 -58838540 + L2a LINE L2 3362 3421 -5 3 1299 185 0 40 0 chr5 93699039 93699064 -58838195 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1299 219 36 0 0 chr5 93699064 93699091 -58838168 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1299 207 0 0 0 chr5 93699506 93699529 -58837730 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1299 212 353 185 7 chr5 93702185 93702336 -58834923 + MER5B DNA MER1_type 1 178 0 3 1299 252 0 0 0 chr5 93702616 93702644 -58834615 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1299 317 301 115 22 chr5 93702651 93702790 -58834469 + RSINE1 SINE B4 3 154 -11 3 1299 495 202 266 23 chr5 93702874 93703051 -58834208 + ID_B1 SINE B4 2 221 -3 3 1299 952 141 0 0 chr5 93703561 93703696 -58833563 + B1_Mur3 SINE Alu 1 135 -14 3 1299 871 175 35 0 chr5 93705697 93705840 -58831419 - B1_Mur2 SINE Alu 0 149 2 3 1299 1651 163 69 3 chr5 93705980 93706300 -58830959 - ORR1C1 LTR MaLR -35 343 3 3 1299 276 302 0 0 chr5 93707074 93707246 -58830013 + (TG)n Simple_repeat Simple_repeat 2 173 0 3 1299 222 318 0 23 chr5 93707802 93707889 -58829370 - BC1_Mm scRNA scRNA -45 107 23 3 1299 252 0 0 0 chr5 93708152 93708180 -58829079 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1299 257 259 111 0 chr5 93708387 93708468 -58828791 + MLT1H2 LTR MaLR 400 489 0 3 1299 827 265 39 0 chr5 93710595 93710776 -58826483 + B3 SINE B2 1 188 -28 3 1299 468 0 0 0 chr5 93710777 93710829 -58826430 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1299 1047 44 7 0 chr5 93711201 93711337 -58825922 + B1_Mm SINE Alu 9 145 -2 3 1299 241 155 17 17 chr5 93712967 93713026 -58824233 + (TATG)n Simple_repeat Simple_repeat 2 60 0 3 1299 1094 101 0 26 chr5 93713279 93713432 -58823827 + B1_Mur4 SINE Alu 2 150 0 3 1299 230 377 19 12 chr5 93715065 93715226 -58822033 - LTR16B1 LTR ERVL -2 478 317 3 1299 279 0 0 0 chr5 93715766 93715797 -58821462 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1300 208 354 52 37 chr5 93717097 93717232 -58820027 - MIRc SINE MIR -98 170 34 3 1300 341 292 44 37 chr5 93718128 93718263 -58818996 - B4A SINE B4 -10 282 147 3 1300 246 254 119 0 chr5 93718587 93718654 -58818605 - B4A SINE B4 -115 177 103 3 1300 693 0 0 0 chr5 93718663 93718740 -58818519 + (CCCTAA)n Simple_repeat Simple_repeat 6 82 0 3 1300 341 302 128 15 chr5 93718863 93719058 -58818201 + MIRb SINE MIR 52 268 0 3 1300 728 223 0 26 chr5 93720228 93720380 -58816879 - B1_Mur2 SINE Alu 0 149 2 3 1300 467 286 6 47 chr5 93720387 93720556 -58816703 - ID_B1 SINE B4 0 224 63 3 1300 481 281 79 28 chr5 93720554 93720770 -58816489 - B4A SINE B4 -62 230 4 3 1300 819 211 77 39 chr5 93720796 93721003 -58816256 - B3 SINE B2 0 216 2 3 1300 664 291 14 29 chr5 93721017 93721226 -58816033 - ID_B1 SINE B4 -1 223 18 3 1300 235 276 25 62 chr5 93721166 93721247 -58816012 - ID4_ SINE ID -5 78 1 3 1300 493 200 11 0 chr5 93721266 93721356 -58815903 - PB1D9 SINE Alu -13 107 17 4 1300 329 305 54 83 chr5 93721275 93721381 -58815878 - ID_B1 SINE B4 -48 176 68 4 1300 1844 132 73 318 chr5 93721381 93721685 -58815574 - RMER6C LTR ERVK 0 690 424 4 1300 510 100 39 39 chr5 93721685 93721841 -58815418 + (CACTG)n Simple_repeat Simple_repeat 2 157 0 4 1300 1844 132 73 318 chr5 93721841 93722134 -58815125 - RMER6C LTR ERVK -267 423 321 4 1300 261 0 0 0 chr5 93722134 93722163 -58815096 + (CACTG)n Simple_repeat Simple_repeat 1 29 0 4 1300 2065 132 73 318 chr5 93722163 93722478 -58814781 - RMER6C LTR ERVK -370 320 1 4 1300 246 310 64 91 chr5 93722478 93722539 -58814720 - ID SINE ID -157 67 14 4 1300 480 278 123 34 chr5 93722678 93722857 -58814402 + MLT1A0 LTR MaLR 2 196 -169 4 1300 608 263 137 77 chr5 93722876 93723347 -58813912 - RMER2 LTR ERV1 -26 541 2 4 1300 1001 156 249 0 chr5 93723409 93723582 -58813677 + B3 SINE B2 1 216 0 4 1300 416 280 17 17 chr5 93723601 93723721 -58813538 + MLT1A0 LTR MaLR 287 406 -2 4 1300 1143 216 100 4 chr5 93724836 93725105 -58812154 - MTE2b LTR MaLR -9 370 76 4 1300 190 315 196 9 chr5 93725849 93725961 -58811298 + MIR SINE MIR 20 152 -110 4 1300 449 226 174 0 chr5 93726052 93726167 -58811092 - MIR SINE MIR -80 182 48 4 1300 450 0 0 0 chr5 93726298 93726348 -58810911 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1300 661 194 73 58 chr5 93726689 93726826 -58810433 - B1_Mus1 SINE Alu -6 142 4 4 1300 264 231 89 57 chr5 93726958 93727082 -58810177 - L1MC3 LINE L1 -158 7627 7500 4 1300 2092 181 58 2 chr5 93727082 93727481 -58809778 - MTC LTR MaLR 0 421 1 4 1300 698 293 78 59 chr5 93727490 93727530 -58809729 - L1MD3 LINE L1 -300 7695 7658 4 1300 453 260 29 0 chr5 93727530 93727634 -58809625 - PB1D10 SINE Alu -6 111 5 4 1300 698 293 78 59 chr5 93727634 93727967 -58809292 - L1MD3 LINE L1 -338 7657 7315 4 1300 828 200 0 73 chr5 93728046 93728224 -58809035 - B3 SINE B2 0 216 52 4 1300 279 0 0 0 chr5 93729270 93729301 -58807958 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 4 1300 479 256 132 42 chr5 93730061 93730355 -58806904 + RLTR15 LTR ERVK 48 337 -22 4 1300 740 199 25 56 chr5 93730848 93731045 -58806214 + B2_Mm2 SINE B2 3 193 -2 4 1300 685 291 127 0 chr5 93731511 93731700 -58805559 + ID_B1 SINE B4 8 220 -4 4 1300 458 88 19 29 chr5 93731930 93732035 -58805224 + (CAAAA)n Simple_repeat Simple_repeat 2 105 0 4 1300 329 182 193 0 chr5 93732616 93732704 -58804555 - MTE2b LTR MaLR 0 379 275 4 1300 689 247 147 11 chr5 93732976 93733160 -58804099 + B3 SINE B2 8 216 0 4 1300 949 236 107 110 chr5 93733377 93733844 -58803415 - MT2B LTR ERVL -14 587 1 4 1300 6284 159 44 59 chr5 93733844 93735044 -58802215 - MERVL_2A-int LTR ERVL 0 5761 4580 4 1300 6369 86 52 25 chr5 93735869 93735884 -58801375 - Lx3_Mus LINE L1 -5 7004 6991 4 1300 180 0 0 0 chr5 93735884 93735904 -58801355 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 4 1300 6369 86 52 25 chr5 93735904 93736802 -58800457 - Lx3_Mus LINE L1 -19 6990 6066 4 1300 2570 51 39 0 chr5 93736803 93737136 -58800123 + Lx3_Mus LINE L1 5717 6062 -947 4 1300 333 0 0 0 chr5 93737193 93737230 -58800029 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1300 6065 93 33 1 chr5 93737959 93738797 -58798462 + L1VL2 LINE L1 117 969 -5366 4 1300 37090 17 15 20 chr5 93738797 93743277 -58793982 + L1Md_A LINE L1 415 4924 -959 4 1300 225 183 46 77 chr5 93743277 93743342 -58793917 - RMER20A LTR ERVK -268 248 186 4 1300 37090 17 15 20 chr5 93743342 93743998 -58793261 + L1Md_A LINE L1 4925 5586 -297 4 1300 9006 34 0 0 chr5 93743998 93744993 -58792266 + L1Md_T LINE L1 5587 6581 -1 4 1300 13695 77 24 16 chr5 93745002 93747021 -58790238 + MusHAL1 LINE L1 46 2080 -632 4 1300 984 144 149 62 chr5 93747286 93747494 -58789765 + URR1A DNA MER1_type 1 226 0 4 1300 9535 84 8 5 chr5 93747516 93749336 -58787923 - L1_Mus1 LINE L1 0 6567 4736 4 1300 180 0 0 0 chr5 93749336 93749356 -58787903 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1300 9535 97 12 9 chr5 93749356 93749575 -58787684 - L1_Mus1 LINE L1 -1148 4735 4520 4 1300 22 56 0 0 chr5 93749954 93749990 -58787269 + AT_rich Low_complexity Low_complexity 1 36 0 4 1300 495 118 0 0 chr5 93753101 93753177 -58784082 + (CA)n Simple_repeat Simple_repeat 2 77 0 4 1300 260 289 12 50 chr5 93753257 93753337 -58783922 - RMER20B LTR ERVK -38 589 513 4 1300 759 232 60 28 chr5 93753425 93753677 -58783582 - RMER20B LTR ERVK -288 339 96 4 1300 1875 164 136 9 chr5 93754375 93754720 -58782539 - ORR1B1 LTR MaLR -1 393 5 4 1300 936 162 13 13 chr5 93755016 93755166 -58782093 + B1_Mur4 SINE Alu 1 150 0 4 1300 325 197 0 41 chr5 93755168 93755290 -58781969 + GA-rich Low_complexity Low_complexity 1 117 0 4 1300 2334 153 108 0 chr5 93755475 93755855 -58781404 - MTC LTR MaLR 0 421 1 4 1300 2013 214 76 106 chr5 93757577 93757926 -58779333 - Lx7 LINE L1 -30 7666 7106 4 1300 396 0 0 0 chr5 93757926 93757970 -58779289 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1300 234 0 0 0 chr5 93757970 93757995 -58779264 + (GA)n Simple_repeat Simple_repeat 1 26 0 4 1300 2013 206 75 112 chr5 93757995 93758296 -58778963 - Lx7 LINE L1 -329 7367 7077 4 1300 982 106 10 0 chr5 93758301 93758465 -58778794 - B2_Mm2 SINE B2 -24 169 2 4 1300 1004 207 10 5 chr5 93758465 93758669 -58778590 - Lx7 LINE L1 -613 7083 6879 4 1300 246 376 70 30 chr5 93759042 93759242 -58778017 - ORR1E LTR MaLR -132 227 20 4 1300 1080 187 38 38 chr5 93759316 93759527 -58777732 - B3 SINE B2 -5 211 1 4 1300 1663 238 32 27 chr5 93760052 93760424 -58776835 + MTE2b LTR MaLR 1 374 -5 4 1300 565 306 50 26 chr5 93760674 93760879 -58776380 - B3A SINE B2 -3 213 1 4 1300 533 152 80 9 chr5 93760921 93761034 -58776225 - RMER1C Other Other 0 1342 1222 4 1300 7973 57 3 13 chr5 93761176 93761373 -58775886 - L1Md_F2 LINE L1 0 6582 6395 4 1300 1699 37 5 0 chr5 93761373 93761564 -58775695 - B2_Mm1t SINE B2 0 193 2 4 1300 36588 68 3 15 chr5 93761564 93767555 -58769704 - L1Md_F2 LINE L1 -188 6394 475 4 1300 233 345 50 16 chr5 93768901 93769022 -58768237 + Lx8 LINE L1 6762 6886 -587 4 1300 1106 146 50 25 chr5 93769120 93769346 -58767913 + ORR1B1 LTR MaLR 1 203 -191 4 1300 243 259 110 12 chr5 93769393 93769475 -58767784 - ID_B1 SINE B4 -52 172 83 4 1300 368 314 29 7 chr5 93769616 93769754 -58767505 + ID_B1 SINE B4 84 224 0 4 1300 1331 59 24 0 chr5 93770254 93770422 -58766837 - ORR1A1 LTR MaLR 0 346 175 4 1300 12855 73 17 2 chr5 93770422 93772211 -58765048 - ORR1A1-int LTR MaLR 0 1792 3 4 1300 21 36 0 0 chr5 93772228 93772256 -58765003 + AT_rich Low_complexity Low_complexity 1 28 0 4 1300 226 263 63 38 chr5 93772468 93772547 -58764712 + B1F2 SINE Alu 2 83 -66 4 1300 526 281 58 35 chr5 93772568 93772741 -58764518 + B3A SINE B2 15 191 -7 4 1300 874 194 164 3 chr5 93773852 93774175 -58763084 + RMER6B LTR ERVK 1 375 -86 4 1300 1578 194 36 24 chr5 93774175 93774512 -58762747 + MYSERV6-int LTR ERVK 2045 2385 -6574 4 1300 22 56 0 0 chr5 93774567 93774603 -58762656 + AT_rich Low_complexity Low_complexity 1 36 0 4 1300 23449 49 6 4 chr5 93774915 93776836 -58760423 - L1Md_F3 LINE L1 -14 6573 4653 4 1300 1756 36 0 0 chr5 93776836 93777029 -58760230 - B2_Mm1t SINE B2 0 193 1 4 1300 29276 63 6 17 chr5 93777029 93781295 -58755964 - L1Md_F3 LINE L1 -1234 4652 261 4 1300 2087 154 30 15 chr5 93781297 93781699 -58755560 + MYSERV6-int LTR ERVK 2370 2777 -6182 4 1300 246 342 49 22 chr5 93781700 93781885 -58755374 + L1_Mur2 LINE L1 209 398 -6314 4 1300 1085 193 71 24 chr5 93782003 93782258 -58755001 + L1_Mur2 LINE L1 442 708 -6004 4 1300 2508 112 73 8 chr5 93782259 93782655 -58754604 + BGLII_Mus LTR ERVK 1 422 0 4 1300 4980 130 14 76 chr5 93782985 93783059 -58754200 + L1_Mus3 LINE L1 5038 5112 -771 4 1300 1318 48 0 0 chr5 93783059 93783206 -58754053 + B1_Mm SINE Alu 1 147 0 4 1300 4980 130 14 76 chr5 93783206 93783376 -58753883 + L1_Mus3 LINE L1 5113 5243 -640 4 1300 198 0 0 0 chr5 93783376 93783398 -58753861 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1300 4980 130 14 76 chr5 93783398 93783705 -58753554 + L1_Mus3 LINE L1 5244 5524 -359 4 1300 4520 67 32 49 chr5 93783705 93784302 -58752957 + LTRIS_Mus LTR ERV1 1 587 0 4 1300 7509 86 25 12 chr5 93784302 93785388 -58751871 + L1_Mus3 LINE L1 5525 6637 -1 4 1300 1186 72 0 0 chr5 93785391 93785530 -58751729 + B1_Mus1 SINE Alu 1 139 -9 4 1300 306 0 0 0 chr5 93785530 93785564 -58751695 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1300 1142 98 0 0 chr5 93785564 93785707 -58751552 + B1_Mus1 SINE Alu 2 144 -4 4 1300 254 269 0 0 chr5 93785716 93785820 -58751439 + A-rich Low_complexity Low_complexity 1 104 0 4 1300 1026 327 80 0 chr5 93786007 93786604 -58750655 + MYSERV6-int LTR ERVK 452 1096 -7863 4 1300 3186 74 5 8 chr5 93786615 93787012 -58750247 + MTA_Mm LTR MaLR 1 396 0 4 1300 1677 53 0 14 chr5 93787012 93787219 -58750040 - L1_Mus2 LINE L1 -540 6026 5826 4 1300 4007 64 49 16 chr5 93787219 93787725 -58749534 + L1_Mus2 LINE L1 6044 6566 0 4 1300 2335 295 100 13 chr5 93787733 93788649 -58748610 + MYSERV6-int LTR ERVK 1085 2080 -6879 4 1300 2050 225 45 28 chr5 93788660 93788773 -58748486 + MYSERV6-int LTR ERVK 4114 4218 -4741 4 1300 7870 50 0 6 chr5 93788773 93789689 -58747570 + L1Md_F2 LINE L1 5672 6582 0 4 1300 2050 225 45 28 chr5 93789689 93790069 -58747190 + MYSERV6-int LTR ERVK 4219 4615 -4344 4 1300 4132 199 94 40 chr5 93790190 93791943 -58745316 + MYSERV16_I-int LTR ERVK 319 2235 -91 4 1300 916 182 84 34 chr5 93791974 93792009 -58745250 + L1_Mur2 LINE L1 1116 1145 -6583 4 1300 2551 128 18 55 chr5 93792009 93792447 -58744812 + BGLII_Mus LTR ERVK 1 422 0 4 1300 3012 137 89 74 chr5 93792447 93792868 -58744391 + L1_Mur2 LINE L1 1144 1591 -4286 4 1300 853 82 205 0 chr5 93792868 93792990 -58744269 + B1_Mm SINE Alu 1 147 0 4 1300 243 79 0 0 chr5 93793000 93793038 -58744221 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 4 1300 3012 140 87 125 chr5 93793038 93793467 -58743792 + L1_Mur2 LINE L1 1592 1974 -3903 4 1300 2311 233 21 8 chr5 93793466 93793990 -58743269 + Lx5 LINE L1 6091 6621 -429 4 1300 1808 228 95 40 chr5 93793990 93794410 -58742849 + RLTR41 LTR ERV1 1 443 -3 4 1300 19497 59 3 1 chr5 93794421 93797567 -58739692 - L1Md_F2 LINE L1 -14 6568 3417 4 1300 1378 271 25 48 chr5 93797559 93798001 -58739258 + Lx5 LINE L1 6619 7050 0 4 1300 200 228 0 17 chr5 93798782 93798840 -58738419 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 4 1300 482 290 28 66 chr5 93798950 93799131 -58738128 + B2_Mm2 SINE B2 1 174 -21 4 1300 444 309 40 29 chr5 93799391 93799564 -58737695 - B3A SINE B2 -16 182 8 4 1300 326 289 44 88 chr5 93799541 93799723 -58737536 - RMER10B LTR ERVL -12 386 213 4 1300 8036 40 30 2 chr5 93801807 93802968 -58734291 - L1Md_F3 LINE L1 0 6584 5399 4 1300 38809 44 0 3 chr5 93804855 93811235 -58726024 - L1Md_T LINE L1 0 6585 126 4 1300 41458 22 1 12 chr5 93811566 93817606 -58719653 - L1Md_A LINE L1 -1 6581 660 4 1300 4407 48 6 0 chr5 93818778 93819282 -58717977 - L1Md_F2 LINE L1 -1 6581 6075 4 1300 3975 199 30 1 chr5 93822424 93823185 -58714074 + Lx2B LINE L1 6214 6996 -4 4 1300 944 233 14 5 chr5 93824131 93824347 -58712912 + L1_Mur2 LINE L1 5453 5670 -207 5 1300 714 217 141 11 chr5 93824370 93824547 -58712712 + Lx7 LINE L1 7033 7232 -464 5 1300 1123 51 0 62 chr5 93824580 93824726 -58712533 - B1_Mus1 SINE Alu -9 139 3 5 1300 1207 76 0 0 chr5 93824772 93824917 -58712342 - B1_Mm SINE Alu 0 147 3 5 1300 227 305 23 101 chr5 93824926 93825145 -58712114 + Lx7 LINE L1 7253 7454 -242 5 1300 297 268 153 8 chr5 93825275 93825399 -58711860 - B1F2 SINE Alu -1 148 7 5 1300 676 236 7 0 chr5 93825410 93825554 -58711705 + Lx7 LINE L1 7550 7694 -2 5 1300 266 330 0 43 chr5 93825571 93825601 -58711658 + B3 SINE B2 1 27 -189 5 1300 5090 43 16 2 chr5 93825601 93826180 -58711079 + LTRIS_Mus LTR ERV1 1 587 0 5 1300 266 330 0 43 chr5 93826180 93826241 -58711018 + B3 SINE B2 28 88 -128 5 1300 246 377 75 59 chr5 93826777 93826963 -58710296 + MTEa LTR MaLR 32 220 -159 5 1300 2993 48 0 17 chr5 93827492 93827849 -58709410 - L1Md_F3 LINE L1 -1 6583 6233 5 1300 417 192 0 0 chr5 93828093 93828166 -58709093 - L1_Mus4 LINE L1 -499 6137 6065 5 1300 423 122 0 89 chr5 93828167 93828257 -58709002 + L1_Mus3 LINE L1 6550 6631 -7 5 1300 327 222 138 49 chr5 93828756 93828879 -58708380 - RSINE1 SINE B4 -29 136 3 5 1300 24418 20 0 4 chr5 93828919 93831736 -58705523 + L1Md_A LINE L1 2780 5586 -297 5 1300 8831 34 7 0 chr5 93831736 93832724 -58704535 + L1Md_A LINE L1 5587 6581 -1 5 1300 411 286 28 28 chr5 93832787 93832931 -58704328 - B1_Mus1 SINE Alu -2 146 3 5 1300 622 234 20 20 chr5 93832961 93833109 -58704150 - B1_Mus1 SINE Alu 0 148 1 5 1300 562 304 8 13 chr5 93833280 93833474 -58703785 - B3 SINE B2 -6 210 22 5 1300 285 371 94 25 chr5 93833592 93833794 -58703465 - ID_B1 SINE B4 -8 216 1 5 1300 4536 61 5 0 chr5 93834020 93834629 -58702630 + L1_Mm LINE L1 4917 5528 -355 5 1300 2827 58 8 8 chr5 93834625 93835008 -58702251 + L1Md_F3 LINE L1 6169 6551 -33 5 1300 12345 66 1 0 chr5 93835005 93836686 -58700573 - L1Md_F2 LINE L1 -650 5233 3552 5 1300 2871 44 0 0 chr5 93836683 93837048 -58700211 + L1Md_F2 LINE L1 5222 5586 -297 5 1300 8016 45 2 3 chr5 93837048 93838029 -58699230 + L1Md_F2 LINE L1 5587 6566 -16 5 1300 305 0 50 0 chr5 93838035 93838075 -58699184 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 5 1300 263 277 47 56 chr5 93838865 93838972 -58698287 - ID_B1 SINE B4 0 224 119 5 1300 270 0 0 0 chr5 93839008 93839038 -58698221 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1300 384 22 0 0 chr5 93839040 93839085 -58698174 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1300 353 331 99 20 chr5 93841580 93841731 -58695528 + B3A SINE B2 25 187 -11 5 1300 216 111 0 0 chr5 93842129 93842165 -58695094 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1300 367 311 52 7 chr5 93843173 93843309 -58693950 + ID_B1 SINE B4 83 224 0 5 1300 507 206 0 0 chr5 93843373 93843504 -58693755 + Lx LINE L1 6524 6654 0 5 1300 10080 195 38 32 chr5 93843526 93843684 -58693575 + L1_Mur2 LINE L1 3129 3274 -2603 5 1300 397 120 18 99 chr5 93843684 93843795 -58693464 + L1_Mus3 LINE L1 6536 6637 -1 5 1300 10080 195 38 32 chr5 93843795 93846215 -58691044 + L1_Mur2 LINE L1 3275 5722 -155 5 1300 3747 170 38 4 chr5 93846598 93847277 -58689982 - ETnERV2-int LTR ERVK -210 7196 6495 5 162 847 279 10 7 chr5 93847306 93847661 -58689598 - ETnERV3-int LTR ERVK -391 7826 7506 5 1301 790 175 112 10 chr5 93847650 93847846 -58689413 - ETnERV3-int LTR ERVK -420 5388 5173 5 1301 3178 16 0 0 chr5 93847893 93848270 -58688989 + MERVL-int LTR ERVL 992 1368 -4117 5 1301 3497 167 22 25 chr5 93848284 93849073 -58688186 - ETnERV3-int LTR ERVK -719 5089 3577 5 1301 7744 44 3 2 chr5 93849073 93850357 -58686902 - L1Md_F3 LINE L1 -14 6570 5285 5 1301 17765 50 4 5 chr5 93853754 93856798 -58680461 - L1Md_F2 LINE L1 0 6582 3541 5 1301 2130 237 11 19 chr5 93856808 93856842 -58680417 - Lx5 LINE L1 -400 6650 6619 5 1301 1745 219 95 40 chr5 93856842 93857265 -58679994 - RLTR41 LTR ERV1 0 446 1 5 1301 2130 237 11 19 chr5 93857265 93857768 -58679491 - Lx5 LINE L1 -432 6618 6117 5 1301 459 0 0 0 chr5 93857788 93857839 -58679420 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1301 503 227 68 8 chr5 93857845 93857978 -58679281 - L1_Mur2 LINE L1 -281 5596 5456 5 1301 359 199 81 74 chr5 93858770 93858917 -58678342 + RLTR13D3 LTR ERVK 889 1114 0 5 1301 1124 40 86 0 chr5 93859031 93859206 -58678053 - MusHAL1 LINE L1 -2488 224 35 5 1301 3163 78 33 7 chr5 93859206 93859631 -58677628 + RLTR10C LTR ERVK 1 436 0 5 1301 1269 64 0 6 chr5 93859631 93859804 -58677455 + MMERVK10C-int LTR ERVK 1 172 -7409 5 1301 245 302 0 0 chr5 93859804 93859857 -58677402 + RLTR27 LTR ERVK 223 275 -34 5 1301 628 135 72 0 chr5 93859857 93859968 -58677291 + MMERVK10C-int LTR ERVK 225 343 -7238 5 1301 618 175 21 0 chr5 93859967 93860110 -58677149 + MMERVK10C-int LTR ERVK 747 892 -6689 5 1301 31195 49 6 9 chr5 93860105 93864445 -58672814 + MMERVK10C-int LTR ERVK 3319 7581 0 5 1301 3255 76 28 7 chr5 93864446 93864872 -58672387 + RLTR10C LTR ERVK 2 436 0 5 1301 4878 146 35 22 chr5 93864872 93865767 -58671492 - L1VL2 LINE L1 -5392 943 38 5 1301 1104 185 32 8 chr5 93865767 93866018 -58671241 + L1_Mur2 LINE L1 1758 2014 -3863 5 1301 928 167 12 6 chr5 93866018 93866187 -58671072 + B2_Mm2 SINE B2 2 171 -24 5 1301 810 31 0 0 chr5 93866303 93866400 -58670859 + (GA)n Simple_repeat Simple_repeat 1 97 0 5 1301 1363 242 86 57 chr5 93866400 93866934 -58670325 + MYSERV6-int LTR ERVK 8429 8905 -54 5 1301 469 252 28 14 chr5 93866956 93867101 -58670158 + RLTR12B LTR ERVK 41 187 -341 5 1301 348 114 0 10 chr5 93867088 93867158 -58670101 + ORR1A4 LTR MaLR 274 370 -14 5 1301 260 125 0 97 chr5 93867162 93867186 -58670073 + MYSERV6-int LTR ERVK 7301 7324 -1635 5 1301 833 173 16 58 chr5 93867186 93867376 -58669883 + B2_Mm2 SINE B2 2 183 -12 5 1301 1265 175 177 20 chr5 93867376 93867710 -58669549 + MYSERV6-int LTR ERVK 7325 7709 -1250 5 1301 2002 234 28 5 chr5 93868008 93868441 -58668818 + RLTR21 LTR ERVK 6 448 -1124 5 1301 2202 212 40 13 chr5 93868602 93869205 -58668054 + L1_Mur2 LINE L1 1514 2132 -3745 5 1301 39433 6 0 0 chr5 93869209 93875770 -58661489 - L1Md_A LINE L1 0 6582 23 5 1301 4802 172 99 15 chr5 93875793 93876978 -58660281 + L1_Mur2 LINE L1 2151 3434 -2443 5 1301 1227 188 89 1 chr5 93876981 93877230 -58660029 + ORR1A1 LTR MaLR 1 278 -68 5 1301 353 143 0 16 chr5 93877230 93877294 -58659965 + L1_Mur2 LINE L1 3487 3549 -2328 5 1301 505 274 192 50 chr5 93877296 93877618 -58659641 + RLTR9A LTR ERVK 1 368 0 5 1301 2494 179 267 16 chr5 93877618 93877887 -58659372 + L1_Mur2 LINE L1 3544 3810 -2067 5 1301 1078 99 0 0 chr5 93877887 93878029 -58659230 + B1_Mus2 SINE Alu 1 142 -5 5 1301 2494 179 267 16 chr5 93878029 93878523 -58658736 + L1_Mur2 LINE L1 3811 4499 -1378 5 1301 2612 131 50 0 chr5 93878985 93879444 -58657815 + L1_Mur2 LINE L1 4492 4973 -904 5 1301 15204 188 68 31 chr5 93879493 93882723 -58654536 + Lx2B LINE L1 1723 5138 -739 5 1301 1219 28 7 0 chr5 93882723 93882868 -58654391 + B1_Mm SINE Alu 2 147 0 5 1301 15204 180 101 19 chr5 93882868 93883716 -58653543 + Lx2B LINE L1 5139 6001 -1057 5 1301 21 57 0 0 chr5 93883801 93883836 -58653423 + AT_rich Low_complexity Low_complexity 1 35 0 5 1301 1054 62 0 3 chr5 93883840 93883991 -58653268 + B1_Mm SINE Alu 1 146 -2 5 1301 3023 222 57 7 chr5 93884027 93884776 -58652483 + Lx2B LINE L1 6203 6989 -11 5 1301 332 164 60 0 chr5 93884789 93884856 -58652403 + Lx3B LINE L1 6898 6968 -5 5 1301 201 155 0 53 chr5 93884907 93884982 -58652277 + (CAAA)n Simple_repeat Simple_repeat 2 72 0 5 1301 1016 90 21 7 chr5 93885366 93885511 -58651748 + B1_Mus2 SINE Alu 1 147 0 5 1301 275 282 9 97 chr5 93886029 93886143 -58651116 - PB1D7 SINE Alu -14 106 3 5 1301 468 302 75 27 chr5 93886396 93886583 -58650676 + ID_B1 SINE B4 4 199 -25 5 1301 240 275 127 53 chr5 93886473 93886623 -58650636 - YREP_Mm Unknown Unknown -1497 315 155 5 1301 624 296 0 0 chr5 93886770 93886922 -58650337 + B3 SINE B2 60 211 -5 5 1301 409 32 48 0 chr5 93886924 93886986 -58650273 + (TTTG)n Simple_repeat Simple_repeat 2 66 0 5 1301 1008 105 0 34 chr5 93886986 93887134 -58650125 - B1_Mus1 SINE Alu -5 143 1 5 1301 455 353 0 0 chr5 93887163 93887299 -58649960 + B1_Mur1 SINE Alu 6 141 -8 5 1301 376 236 67 60 chr5 93887308 93887457 -58649802 + B1_Mur4 SINE Alu 1 150 0 5 1301 541 259 7 15 chr5 93887491 93887628 -58649631 + B1_Mm SINE Alu 12 147 0 5 1301 249 265 104 38 chr5 93887703 93887809 -58649450 + RSINE1 SINE B4 18 130 -35 5 1301 361 221 12 72 chr5 93887870 93888036 -58649223 - Lx7 LINE L1 -185 7511 7356 5 1301 1712 235 29 10 chr5 93888016 93888433 -58648826 + Lx4A LINE L1 6634 7058 0 5 1301 1363 251 60 38 chr5 93888471 93888922 -58648337 - Lx7 LINE L1 -335 7361 6901 5 1301 414 0 0 0 chr5 93888942 93888988 -58648271 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1301 1467 232 76 17 chr5 93889596 93889801 -58647458 - RMER16 LTR ERVK 0 533 328 5 1301 2192 166 19 2 chr5 93889801 93890211 -58647048 + Lx LINE L1 6231 6647 -7 5 1301 1467 232 76 17 chr5 93890211 93890412 -58646847 - RMER16 LTR ERVK -206 327 104 5 1301 246 378 8 59 chr5 93890561 93890679 -58646580 + PB1D7 SINE Alu 1 112 -8 5 1301 1666 182 19 45 chr5 93890774 93890876 -58646383 + Lx2B LINE L1 6244 6337 -663 5 1301 880 177 0 0 chr5 93890876 93891023 -58646236 - B1_Mus1 SINE Alu -1 147 1 5 1301 1666 182 19 45 chr5 93891023 93891294 -58645965 + Lx2B LINE L1 6338 6607 -393 5 1301 665 216 0 13 chr5 93891289 93891448 -58645811 + L1_Mur2 LINE L1 4650 4806 -1074 5 1301 227 350 115 10 chr5 93891448 93891552 -58645707 + LTR41 LTR ERVL 98 212 -556 5 1301 2640 223 14 33 chr5 93891552 93891666 -58645593 + L1_Mur2 LINE L1 4904 5018 -859 5 1301 2569 138 38 40 chr5 93891666 93892142 -58645117 - MT2C_Mm LTR ERVL 0 475 1 5 1301 2640 223 14 33 chr5 93892142 93892810 -58644449 + L1_Mur2 LINE L1 5019 5671 -206 5 1301 1342 261 14 113 chr5 93892823 93893265 -58643994 + Lx7 LINE L1 7043 7445 -251 5 1301 266 0 0 29 chr5 93893265 93893300 -58643959 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1301 1342 261 14 113 chr5 93893300 93893426 -58643833 + Lx7 LINE L1 7446 7546 -150 5 1301 413 203 161 15 chr5 93893426 93893556 -58643703 - B1F2 SINE Alu 0 149 1 5 1301 1342 265 16 105 chr5 93893556 93893726 -58643533 + Lx7 LINE L1 7547 7695 -1 5 1301 326 299 0 0 chr5 93893727 93893814 -58643445 + B3 SINE B2 1 87 -129 5 1301 213 301 68 0 chr5 93893958 93894031 -58643228 + PB1D7 SINE Alu 41 118 -2 5 1301 6980 72 4 32 chr5 93894223 93894371 -58642888 - L1_Mus1 LINE L1 0 6567 6432 5 1301 1129 68 7 0 chr5 93894371 93894517 -58642742 + B1_Mus2 SINE Alu 1 147 0 5 1301 27157 77 4 34 chr5 93894517 93895481 -58641778 - L1_Mus1 LINE L1 -136 6431 5493 5 1301 1093 109 0 0 chr5 93895481 93895628 -58641631 - B1_Mus2 SINE Alu 0 147 1 5 1301 27157 117 7 49 chr5 93895628 93895735 -58641524 - L1_Mm LINE L1 -391 5492 5492 5 1301 1199 54 0 20 chr5 93895735 93895885 -58641374 - B1_Mm SINE Alu 0 147 1 5 1301 932 117 14 20 chr5 93895889 93896037 -58641222 - B1_Mus2 SINE Alu 0 147 1 5 1301 986 130 7 0 chr5 93896041 93896187 -58641072 - B1_Mus2 SINE Alu 0 147 1 5 1301 27157 127 8 59 chr5 93896187 93900004 -58637255 - L1_Mus1 LINE L1 -391 5492 1756 5 1301 342 9 43 39 chr5 93900004 93900063 -58637196 - B1_Mm SINE Alu 0 147 87 5 1301 27157 127 8 59 chr5 93900063 93901114 -58636145 - L1_Mus1 LINE L1 -391 1755 726 5 1301 329 263 36 14 chr5 93901123 93901262 -58635997 - L1_Mus1 LINE L1 -5813 803 662 5 1301 273 259 31 167 chr5 93901330 93901492 -58635767 - L1VL1 LINE L1 -6065 357 218 5 1301 229 146 0 0 chr5 93901499 93901540 -58635719 + L1_Mus3 LINE L1 1070 1110 -5506 5 1301 1138 82 94 0 chr5 93901540 93901710 -58635549 + B2_Mm1a SINE B2 2 187 -6 6 1301 736 97 18 0 chr5 93901730 93901843 -58635416 + B1_Mm SINE Alu 33 147 0 6 1301 1355 110 5 0 chr5 93901860 93902122 -58635137 + L1VL1 LINE L1 892 1154 -2544 6 1301 9093 158 66 122 chr5 93902117 93902773 -58634486 + L1_Mus3 LINE L1 3523 4223 -1660 5 1301 403 250 26 123 chr5 93902773 93902928 -58634331 + B2_Mm2 SINE B2 25 164 -31 6 1301 9093 158 66 122 chr5 93902928 93903761 -58633498 + L1_Mus3 LINE L1 4224 5115 -768 5 1301 1089 96 0 0 chr5 93903761 93903907 -58633352 + B1_Mus2 SINE Alu 2 147 0 6 1301 9093 158 66 122 chr5 93903907 93904543 -58632716 + L1_Mus3 LINE L1 5116 5685 -198 5 1301 1254 95 75 5 chr5 93904543 93904744 -58632515 - L1Md_F2 LINE L1 0 6582 6368 6 1301 9093 125 13 36 chr5 93904744 93905701 -58631558 + L1_Mus3 LINE L1 5686 6631 -7 5 1301 1554 70 0 0 chr5 93905947 93906200 -58631059 + (TCTA)n Simple_repeat Simple_repeat 1 253 0 6 1301 6415 225 63 20 chr5 93906200 93908187 -58629072 + L1_Mur2 LINE L1 3598 5670 -207 6 1301 812 284 38 65 chr5 93908210 93908609 -58628650 + Lx7 LINE L1 7036 7423 -273 6 1301 26 0 0 0 chr5 93908654 93908680 -58628579 + AT_rich Low_complexity Low_complexity 1 26 0 6 1301 953 114 43 7 chr5 93908695 93908836 -58628423 - B1_Mus2 SINE Alu -1 146 1 6 1301 495 229 114 0 chr5 93908919 93909050 -58628209 - B1_Mus2 SINE Alu -1 146 1 6 1301 215 150 0 0 chr5 93909208 93909248 -58628011 + B2_Mm2 SINE B2 1 40 -155 6 1301 769 189 27 80 chr5 93909258 93909482 -58627777 - RMER3D-int LTR ERVK -633 2209 1998 6 1301 355 317 37 79 chr5 93909767 93909983 -58627276 - B3 SINE B2 -4 212 6 6 1301 306 255 10 48 chr5 93910032 93910135 -58627124 - RMER10B LTR ERVL -84 314 216 6 1301 570 156 101 0 chr5 93912101 93912210 -58625049 + PB1D9 SINE Alu 1 120 0 6 1301 342 0 0 0 chr5 93912210 93912248 -58625011 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1301 189 0 0 0 chr5 93912246 93912267 -58624992 + (CAAG)n Simple_repeat Simple_repeat 2 22 0 6 1301 1076 91 0 0 chr5 93913509 93913652 -58623607 - B1_Mus2 SINE Alu 0 147 5 6 1301 230 128 0 41 chr5 93913777 93913808 -58623451 + (TTA)n Simple_repeat Simple_repeat 3 32 0 6 1301 294 29 0 0 chr5 93913808 93913843 -58623416 + (TAA)n Simple_repeat Simple_repeat 3 37 0 6 1301 230 128 0 41 chr5 93913843 93913860 -58623399 + (TTA)n Simple_repeat Simple_repeat 1 17 0 6 1301 3244 91 48 4 chr5 93914686 93915148 -58622111 - RLTR45 LTR ERVK 0 482 1 6 1301 3018 207 78 4 chr5 93915157 93915890 -58621369 + Lx2B LINE L1 6203 6989 -11 6 1301 314 182 61 0 chr5 93915904 93915970 -58621289 + Lx3B LINE L1 6898 6967 -6 6 1301 238 253 0 11 chr5 93916001 93916059 -58621200 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 6 1301 201 39 0 0 chr5 93916059 93916085 -58621174 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1301 238 253 0 11 chr5 93916085 93916114 -58621145 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 6 1301 268 273 9 92 chr5 93917033 93917142 -58620117 - PB1D7 SINE Alu -18 102 3 6 1301 252 342 58 75 chr5 93917466 93917586 -58619673 + B1F SINE Alu 4 121 -28 6 1301 227 308 97 52 chr5 93917472 93917626 -58619633 - YREP_Mm Unknown Unknown -1497 315 155 6 1301 575 311 0 0 chr5 93917776 93917927 -58619332 + B3 SINE B2 61 211 -5 6 1301 219 36 0 0 chr5 93917931 93917959 -58619300 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1301 960 109 0 35 chr5 93917959 93918101 -58619158 - B1_Mus1 SINE Alu -11 137 1 6 1301 425 368 0 0 chr5 93918130 93918266 -58618993 + B1_Mur1 SINE Alu 6 141 -8 6 1301 426 225 53 60 chr5 93918275 93918426 -58618833 + B1_Mur4 SINE Alu 1 150 0 6 1301 570 238 8 8 chr5 93918470 93918597 -58618662 + B1_Mm SINE Alu 21 147 0 6 1301 265 272 93 37 chr5 93918670 93918777 -58618482 + RSINE1 SINE B4 18 130 -35 6 1301 365 227 12 72 chr5 93918838 93919004 -58618255 - Lx7 LINE L1 -185 7511 7356 6 1301 1733 244 17 7 chr5 93918984 93919405 -58617854 + Lx4A LINE L1 6634 7058 0 6 1301 1047 265 114 40 chr5 93919440 93919868 -58617391 - Lx7 LINE L1 -335 7361 6902 6 1301 207 69 0 0 chr5 93919868 93919897 -58617362 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1301 220 423 32 16 chr5 93919912 93920037 -58617222 - B3A SINE B2 -47 151 25 6 1301 1493 232 73 17 chr5 93920503 93920708 -58616551 - RMER16 LTR ERVK 0 533 328 6 1301 2046 165 56 2 chr5 93920708 93921103 -58616156 + Lx LINE L1 6231 6646 -8 6 1301 1493 232 73 17 chr5 93921103 93921305 -58615954 - RMER16 LTR ERVK -206 327 104 6 1301 255 369 8 59 chr5 93921454 93921572 -58615687 + PB1D7 SINE Alu 1 112 -8 6 1301 1676 182 19 53 chr5 93921667 93921772 -58615487 + Lx2B LINE L1 6244 6337 -663 6 1301 929 161 0 0 chr5 93921772 93921915 -58615344 - B1_Mus1 SINE Alu -5 143 1 6 1301 1676 182 19 53 chr5 93921915 93922186 -58615073 + Lx2B LINE L1 6338 6607 -393 6 1301 3411 232 13 35 chr5 93922181 93922558 -58614701 + L1_Mur2 LINE L1 4649 5018 -859 6 1301 2600 136 38 40 chr5 93922558 93923034 -58614225 - MT2C_Mm LTR ERVL 0 475 1 6 1301 3411 232 13 35 chr5 93923034 93923702 -58613557 + L1_Mur2 LINE L1 5019 5671 -206 6 1301 875 270 19 107 chr5 93923715 93924165 -58613094 + Lx7 LINE L1 7043 7457 -239 6 1301 207 0 0 0 chr5 93924165 93924188 -58613071 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1301 875 270 19 107 chr5 93924188 93924263 -58612996 + Lx7 LINE L1 7458 7521 -175 6 1301 248 91 23 0 chr5 93924273 93924317 -58612942 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 6 1301 413 217 153 15 chr5 93924317 93924448 -58612811 - B1F2 SINE Alu 0 149 1 6 1301 266 276 0 0 chr5 93924468 93924526 -58612733 + B3 SINE B2 30 87 -129 6 1301 220 167 0 0 chr5 93924542 93924578 -58612681 - B3 SINE B2 -179 37 2 6 1301 213 301 68 0 chr5 93924670 93924743 -58612516 + PB1D7 SINE Alu 41 118 -2 6 1301 6706 71 11 43 chr5 93924942 93925088 -58612171 - L1_Mus1 LINE L1 0 6567 6432 6 1301 1129 68 7 0 chr5 93925088 93925234 -58612025 + B1_Mus2 SINE Alu 1 147 0 6 1301 27507 77 11 42 chr5 93925234 93926218 -58611041 - L1_Mus1 LINE L1 -136 6431 5500 6 1301 945 103 81 0 chr5 93926218 93926354 -58610905 - B1_Mus2 SINE Alu 0 147 1 6 1301 198 26 50 25 chr5 93926355 93926395 -58610864 + (TTG)n Simple_repeat Simple_repeat 2 42 0 6 1301 27507 117 9 31 chr5 93926395 93926475 -58610784 - L1_Mm LINE L1 -384 5499 5499 6 1301 1196 54 0 20 chr5 93926475 93926625 -58610634 - B1_Mm SINE Alu 0 147 1 6 1301 1026 116 7 0 chr5 93926629 93926775 -58610484 - B1_Mus2 SINE Alu 0 147 1 6 1301 27507 117 9 31 chr5 93926775 93928075 -58609184 - L1_Mus1 LINE L1 -384 5499 4208 6 1301 204 40 0 0 chr5 93928075 93928100 -58609159 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 1301 27507 118 10 32 chr5 93928100 93931117 -58606142 - L1_Mus1 LINE L1 -1676 4207 1174 6 1301 429 36 0 0 chr5 93931117 93931172 -58606087 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1301 1847 180 28 97 chr5 93931172 93931660 -58605599 - L1_Mus1 LINE L1 -5409 1207 726 6 1301 352 273 21 14 chr5 93931669 93931810 -58605449 - L1_Mus1 LINE L1 -5813 803 662 6 1301 278 283 29 157 chr5 93931878 93932050 -58605209 - L1VL1 LINE L1 -6065 357 208 6 1301 229 146 0 0 chr5 93932047 93932088 -58605171 + L1_Mus3 LINE L1 1070 1110 -5506 6 1301 1105 72 114 0 chr5 93932088 93932254 -58605005 + B2_Mm1a SINE B2 2 186 -7 6 1301 730 123 9 0 chr5 93932274 93932388 -58604871 + B1_Mm SINE Alu 33 147 0 6 1301 1338 112 9 0 chr5 93932414 93932675 -58604584 + L1VL1 LINE L1 892 1154 -2544 6 1301 10260 159 34 96 chr5 93932670 93933411 -58603848 + L1_Mus3 LINE L1 3523 4270 -1613 6 1301 409 167 0 35 chr5 93933411 93933498 -58603761 + B2_Mm2 SINE B2 95 178 -17 6 1301 10260 159 34 96 chr5 93933498 93934333 -58602926 + L1_Mus3 LINE L1 4271 5115 -768 6 1301 1066 103 0 0 chr5 93934333 93934478 -58602781 + B1_Mus2 SINE Alu 2 146 -1 6 1301 10260 159 34 96 chr5 93934478 93935111 -58602148 + L1_Mus3 LINE L1 5116 5685 -198 6 1301 1231 101 70 5 chr5 93935111 93935311 -58601948 - L1Md_F2 LINE L1 -2 6580 6368 6 1301 10260 129 13 35 chr5 93935311 93936267 -58600992 + L1_Mus3 LINE L1 5686 6631 -7 6 1301 666 159 0 0 chr5 93936513 93936639 -58600620 + (TCTA)n Simple_repeat Simple_repeat 2 127 0 6 1301 6923 226 35 20 chr5 93936639 93938681 -58598578 + L1_Mur2 LINE L1 3598 5670 -207 6 1301 797 284 38 63 chr5 93938704 93939102 -58598157 + Lx7 LINE L1 7036 7423 -273 6 1301 28 0 0 0 chr5 93939147 93939175 -58598084 + AT_rich Low_complexity Low_complexity 1 28 0 6 1301 757 86 0 9 chr5 93939190 93939296 -58597963 - B1_Mus2 SINE Alu -1 146 42 6 1301 230 202 59 84 chr5 93939221 93939340 -58597919 - RLTR25B LTR ERVK -516 512 397 6 1301 360 136 0 33 chr5 93939426 93939487 -58597772 - PB1D9 SINE Alu -61 59 1 6 1301 306 206 0 88 chr5 93939487 93939506 -58597753 - B4 SINE B4 -148 144 72 6 1301 459 250 36 68 chr5 93939506 93939569 -58597690 + Lx7 LINE L1 7485 7542 -154 6 1301 477 229 114 0 chr5 93939569 93939700 -58597559 - B1_Mus2 SINE Alu -1 146 1 6 1301 459 250 36 68 chr5 93939700 93939855 -58597404 + Lx7 LINE L1 7543 7696 0 6 1301 760 195 32 64 chr5 93939920 93940139 -58597120 - RMER3D-int LTR ERVK -633 2209 1998 6 1301 351 347 23 65 chr5 93940424 93940640 -58596619 - B3 SINE B2 -4 212 6 6 1301 348 271 39 39 chr5 93940665 93940792 -58596467 - RMER10B LTR ERVL -56 342 216 6 1301 20718 105 40 4 chr5 93942026 93946665 -58590594 + Lx LINE L1 233 5306 -580 6 1301 6696 70 0 6 chr5 93946663 93947805 -58589454 - L1Md_F2 LINE L1 -498 6086 4951 6 1301 3638 62 4 6 chr5 93947805 93948277 -58588982 + L1Md_F2 LINE L1 6099 6569 -13 6 1301 5617 128 60 4 chr5 93948294 93949569 -58587690 + Lx LINE L1 5314 6638 0 6 1301 1441 54 0 21 chr5 93949986 93950175 -58587084 - B2_Mm1t SINE B2 -7 186 2 6 1301 362 244 67 73 chr5 93950624 93950778 -58586481 + RLTR13D3 LTR ERVK 981 1114 0 6 1301 5523 92 64 7 chr5 93950892 93951215 -58586044 - L1VL2 LINE L1 -2488 1127 784 6 1301 2956 51 0 0 chr5 93951215 93951587 -58585672 + L1Md_F3 LINE L1 6199 6570 -14 6 1301 5523 128 50 18 chr5 93951587 93952322 -58584937 - L1VL2 LINE L1 -5552 783 38 6 1301 1105 185 28 8 chr5 93952322 93952573 -58584686 + L1_Mur2 LINE L1 1758 2013 -3864 6 1301 967 163 17 11 chr5 93952573 93952747 -58584512 + B2_Mm2 SINE B2 1 175 -20 6 1301 303 28 0 0 chr5 93952863 93952899 -58584360 + (GA)n Simple_repeat Simple_repeat 2 37 0 6 1301 1293 248 46 68 chr5 93952900 93953464 -58583795 + MYSERV6-int LTR ERVK 8426 8903 -56 6 1301 439 259 28 14 chr5 93953486 93953631 -58583628 + RLTR12B LTR ERVK 41 187 -341 6 1301 338 149 15 15 chr5 93953618 93953686 -58583573 + ORR1A4 LTR MaLR 254 321 -8 6 1301 782 197 27 11 chr5 93953714 93953899 -58583360 + B2_Mm2 SINE B2 2 189 -6 6 1301 1202 181 61 10 chr5 93953942 93954238 -58583021 + MYSERV6-int LTR ERVK 7399 7709 -1250 6 1301 2036 232 28 2 chr5 93954532 93954964 -58582295 + RLTR21 LTR ERVK 6 448 -1124 6 1301 1507 215 43 2 chr5 93955129 93955525 -58581734 + L1_Mur2 LINE L1 1520 1931 -3949 6 1301 738 194 103 7 chr5 93955525 93955670 -58581589 + ORR1A2 LTR MaLR 101 259 -68 7 1301 2192 209 236 45 chr5 93955676 93955744 -58581515 + L1_Mur2 LINE L1 3486 3545 -2335 6 1301 415 251 214 71 chr5 93955744 93956066 -58581193 + RLTR9A LTR ERVK 1 368 0 7 1301 2192 209 236 45 chr5 93956066 93956334 -58580925 + L1_Mur2 LINE L1 3546 3810 -2070 6 1301 911 102 70 0 chr5 93956334 93956462 -58580797 + B1_Mus2 SINE Alu 1 137 -10 7 1301 2192 209 236 45 chr5 93956462 93956976 -58580283 + L1_Mur2 LINE L1 3811 4500 -1380 6 1301 2512 126 56 19 chr5 93957438 93957900 -58579359 + L1_Mur2 LINE L1 4492 4970 -907 6 1301 15913 186 67 16 chr5 93957952 93958247 -58579012 + Lx5 LINE L1 1723 2054 -3823 7 1301 279 79 0 0 chr5 93958247 93958285 -58578974 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1301 15913 203 76 15 chr5 93958285 93963012 -58574247 + Lx5 LINE L1 2055 7048 -2 7 1301 478 262 97 46 chr5 93963033 93963249 -58574010 + Lx6 LINE L1 7208 7434 -26 7 1301 2405 242 97 62 chr5 93963256 93964183 -58573076 - MT-int LTR MaLR -135 963 4 7 1301 962 146 79 0 chr5 93964216 93964380 -58572879 - MTC LTR MaLR -233 188 12 7 1301 239 122 0 20 chr5 93964380 93964389 -58572870 + (CA)n Simple_repeat Simple_repeat 2 10 0 7 1301 873 29 0 0 chr5 93964389 93964493 -58572766 + (TC)n Simple_repeat Simple_repeat 1 104 0 7 1301 239 122 0 20 chr5 93964493 93964533 -58572726 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1301 365 314 93 10 chr5 93964710 93964903 -58572356 + ID_B1 SINE B4 5 213 -11 7 1301 481 285 29 0 chr5 93965005 93965142 -58572117 + B1F SINE Alu 2 142 -7 7 1301 330 312 19 19 chr5 93965478 93965684 -58571575 + Lx9 LINE L1 7278 7483 -161 7 1301 189 26 0 73 chr5 93965893 93965934 -58571325 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 7 1301 597 231 41 46 chr5 93965935 93966130 -58571129 - RMER5 LTR ERV1 -10 524 331 7 1301 3513 52 0 0 chr5 93966150 93966607 -58570652 - L1Md_F2 LINE L1 -471 6111 5655 7 1301 2991 93 7 0 chr5 93966611 93967020 -58570239 + L1_Mus1 LINE L1 6156 6567 0 7 1301 665 321 32 92 chr5 93967021 93967391 -58569868 - RMER5 LTR ERV1 -174 360 13 7 1301 7211 68 3 10 chr5 93967531 93968570 -58568689 + L1_Mus1 LINE L1 5540 6563 -4 7 1301 743 345 61 23 chr5 93969119 93969463 -58567796 - MTEa LTR MaLR -20 359 3 7 1301 428 237 67 22 chr5 93969504 93969638 -58567621 - B1_Mur3 SINE Alu -8 141 2 7 1301 3881 57 0 0 chr5 93969999 93970474 -58566785 - MT2C_Mm LTR ERVL 0 475 1 7 1301 696 252 130 50 chr5 93970482 93970625 -58566634 + MTEb LTR MaLR 2 166 -213 7 1301 2599 97 79 0 chr5 93970625 93971006 -58566253 + RLTR10A LTR ERVK 1 411 0 7 1301 696 252 130 50 chr5 93971006 93971163 -58566096 + MTEb LTR MaLR 167 326 -53 7 1301 3288 142 165 9 chr5 93971337 93971936 -58565323 + L1VL1 LINE L1 245 962 -5460 7 1301 1353 61 55 0 chr5 93971936 93972117 -58565142 + B2_Mm2 SINE B2 2 192 -3 7 1301 4745 110 7 1 chr5 93972117 93972917 -58564342 + L1VL1 LINE L1 963 1764 -1934 7 1301 314 73 0 5 chr5 93972917 93972970 -58564289 + PB1D9 SINE Alu 4 55 -94 7 1301 4841 112 13 0 chr5 93972970 93973677 -58563582 + L1_Mus3 LINE L1 5916 6631 -7 7 1301 831 200 130 0 chr5 93973977 93974177 -58563082 + URR1A DNA MER1_type 1 226 0 7 162 25293 110 9 5 chr5 93974700 93979565 -58557694 - L1_Mus1 LINE L1 0 6654 1686 7 1302 36055 31 3 0 chr5 93979550 93986394 -58550865 - L1Md_T LINE L1 0 6585 1 7 1302 277 62 0 0 chr5 93986382 93986430 -58550829 - L1_Mus1 LINE L1 -4165 1718 1671 7 1302 396 307 50 28 chr5 93986558 93986699 -58550560 + ORR1D2 LTR MaLR 3 146 -224 7 1302 317 200 86 0 chr5 93986716 93986786 -58550473 + B3 SINE B2 6 81 -135 7 1302 1339 263 60 27 chr5 93986803 93987205 -58550054 - MTD LTR MaLR 0 419 5 7 1302 1659 226 24 13 chr5 93987318 93987695 -58549564 + MTC-int LTR MaLR 427 807 -451 7 1302 547 172 10 0 chr5 93987685 93987779 -58549480 + MTC LTR MaLR 224 318 -103 7 1302 591 223 23 8 chr5 93987779 93987910 -58549349 - RLTR9E LTR ERVK 0 409 277 7 1302 3440 55 14 2 chr5 93987976 93988417 -58548842 + L1Md_F3 LINE L1 6139 6584 0 7 1302 614 243 110 65 chr5 93988447 93988738 -58548521 + L1_Mur1 LINE L1 11 314 -6668 7 1302 1357 134 5 0 chr5 93988737 93988954 -58548305 + L1_Mus4 LINE L1 6187 6404 -232 7 1302 3620 105 2 5 chr5 93988950 93989507 -58547752 + L1_Mur1 LINE L1 4487 5041 -845 7 1302 3490 244 12 25 chr5 93989528 93990444 -58546815 + Lx5 LINE L1 6144 7047 -3 7 1302 192 40 0 0 chr5 93991235 93991260 -58545999 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1302 561 269 0 23 chr5 93991403 93991536 -58545723 + B2_Mm2 SINE B2 2 131 -64 7 1302 487 284 63 29 chr5 93991855 93992029 -58545230 - B3A SINE B2 -13 185 6 7 1302 8356 61 1 0 chr5 93993052 93994861 -58542398 - L1Md_F2 LINE L1 -19 6563 4753 7 1302 185 301 108 46 chr5 93995976 93996171 -58541088 + L2 LINE L2 1447 1653 -1766 7 1302 14923 124 5 2 chr5 93996920 93999998 -58537261 + L1Md_A LINE L1 466 3510 -2373 7 1302 15838 77 1 12 chr5 94000000 94002132 -58535127 + L1Md_F2 LINE L1 3513 5621 -262 1 1302 1904 132 9 51 chr5 94002132 94002468 -58534791 - RLTRETN_Mm LTR ERVK 0 322 1 2 1302 9913 103 21 27 chr5 94002468 94003980 -58533279 - MMETn-int LTR ERVK 0 4844 3342 2 1302 7317 76 6 0 chr5 94003980 94004935 -58532324 + L1Md_F2 LINE L1 5622 6582 0 1 1302 3470 141 24 54 chr5 94005007 94005766 -58531493 + RMER17A LTR ERVK 1 736 -15 3 1302 539 217 13 0 chr5 94005794 94005920 -58531339 + Lx2B LINE L1 6220 6352 -648 4 1302 1074 98 0 14 chr5 94005922 94006067 -58531192 + B1_Mus1 SINE Alu 1 143 -5 5 1302 6921 109 12 2 chr5 94006067 94007260 -58529999 + L1_Mus1 LINE L1 5363 6567 0 6 1302 189 0 0 0 chr5 94007285 94007306 -58529953 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 7 1302 3049 179 70 7 chr5 94007308 94007892 -58529367 + Lx2B LINE L1 6339 6959 -41 4 1302 239 65 0 0 chr5 94007891 94007922 -58529337 + Lx2 LINE L1 6749 6779 -218 8 1302 761 109 6 58 chr5 94007924 94008080 -58529179 + Lx LINE L1 6492 6639 -15 9 1302 263 279 0 0 chr5 94008118 94008204 -58529055 + Lx3B LINE L1 6888 6973 0 1 1302 256 225 38 29 chr5 94008226 94008331 -58528928 + A-rich Low_complexity Low_complexity 4 109 0 1 1302 443 318 80 0 chr5 94009610 94009786 -58527473 + ID_B1 SINE B4 5 194 -30 1 1302 635 184 131 7 chr5 94009852 94010005 -58527254 - Lx5 LINE L1 -436 6614 6443 1 1302 4687 230 34 7 chr5 94010007 94011515 -58525744 + Lx5 LINE L1 5027 6605 -445 1 1302 1647 226 98 41 chr5 94011515 94011934 -58525325 + RLTR41 LTR ERV1 4 446 0 1 1302 998 282 114 18 chr5 94011936 94012330 -58524929 + Lx5 LINE L1 6619 7050 0 1 1302 396 314 0 60 chr5 94013287 94013453 -58523806 + B2_Mm2 SINE B2 18 173 -22 1 1302 15544 52 1 3 chr5 94013671 94016293 -58520966 - L1Md_F2 LINE L1 0 6582 3967 1 1302 224 295 0 0 chr5 94016440 94016501 -58520758 - B3 SINE B2 -148 68 8 1 1302 2212 214 169 18 chr5 94020903 94021588 -58515671 + Lx2B LINE L1 6210 6998 -2 1 1302 2109 111 232 43 chr5 94022035 94022496 -58514763 - RLTR6_Mm LTR ERV1 -70 584 37 2 1302 68330 18 13 1 chr5 94022605 94030294 -58506965 - RLTR6-int LTR ERV1 0 7778 1 2 1302 2212 113 221 43 chr5 94030294 94030777 -58506482 - RLTR6_Mm LTR ERV1 -49 605 37 2 1302 852 255 5 5 chr5 94031380 94031597 -58505662 + L1_Mur2 LINE L1 5454 5670 -207 2 1302 709 220 103 6 chr5 94031606 94031780 -58505479 + Lx7 LINE L1 7022 7212 -484 2 1302 1623 119 27 67 chr5 94031787 94032085 -58505174 - L1Md_F2 LINE L1 -1 6581 6296 2 1302 1704 138 254 33 chr5 94032085 94032534 -58504725 - RLTR6_Mm LTR ERV1 -70 584 37 2 1302 248 209 209 0 chr5 94032574 94032641 -58504618 - RLTR6_Mm LTR ERV1 -573 81 1 2 1302 65235 35 17 6 chr5 94032641 94040344 -58496915 - RLTR6-int LTR ERV1 0 7778 1 2 1302 1760 134 251 33 chr5 94040344 94040798 -58496461 - RLTR6_Mm LTR ERV1 -65 589 37 2 1302 268 194 209 0 chr5 94040838 94040905 -58496354 - RLTR6_Mm LTR ERV1 -573 81 1 2 1302 1545 119 0 0 chr5 94040905 94041123 -58496136 - L1Md_F2 LINE L1 -283 6299 6082 2 1302 6995 111 7 5 chr5 94041127 94042487 -58494772 + L1_Mus1 LINE L1 5206 6566 -1 2 1302 345 258 117 0 chr5 94042551 94042671 -58494588 - B1_Mm SINE Alu -13 134 1 2 1302 637 182 58 7 chr5 94042682 94042820 -58494439 + Lx7 LINE L1 7551 7695 -1 2 1302 315 296 0 0 chr5 94042836 94042924 -58494335 + B3 SINE B2 1 88 -128 2 1302 225 167 0 0 chr5 94044752 94044788 -58492471 + RMER10A LTR ERVL 12 47 -395 3 1302 369 122 0 0 chr5 94045180 94045254 -58492005 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 1302 323 23 0 22 chr5 94045269 94045314 -58491945 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1302 1469 68 21 0 chr5 94045346 94045536 -58491723 + B2_Mm2 SINE B2 2 195 0 3 1302 906 114 31 6 chr5 94045536 94045695 -58491564 + B2_Mm2 SINE B2 31 193 -2 3 1302 1105 353 43 59 chr5 94046486 94047350 -58489909 - RodERV21-int LTR ERV1 -1273 3718 2869 3 1302 306 186 16 53 chr5 94047836 94047943 -58489316 - RodERV21-int LTR ERV1 -2657 4949 4830 3 1302 461 344 30 45 chr5 94049441 94049882 -58487377 - RodERV21-int LTR ERV1 -3020 4071 3638 3 1302 3973 299 19 43 chr5 94050050 94051392 -58485867 - RodERV21-int LTR ERV1 -2273 2718 1410 3 1302 7654 72 1 6 chr5 94051392 94052654 -58484605 + L1Md_F2 LINE L1 5304 6559 -23 3 1302 324 0 0 0 chr5 94052654 94052690 -58484569 + (TAA)n Simple_repeat Simple_repeat 1 36 0 3 1302 813 307 45 111 chr5 94052690 94053430 -58483829 - RodERV21-int LTR ERV1 -3571 1420 730 3 1302 263 294 19 95 chr5 94053409 94053567 -58483692 - RMER17C-int LTR ERVK -2714 524 379 3 1302 261 282 96 27 chr5 94053934 94054080 -58483179 + Lx5 LINE L1 6894 7049 -1 4 1302 8009 62 2 1 chr5 94054232 94055815 -58481444 - L1Md_F2 LINE L1 -12 6570 4987 4 1302 37413 33 4 6 chr5 94055810 94061989 -58475270 - L1Md_A LINE L1 -1 6581 422 4 1302 3018 88 7 0 chr5 94061995 94062428 -58474831 - L1Md_F2 LINE L1 -888 4995 4560 4 1302 602 260 17 61 chr5 94063224 94063404 -58473855 + B2_Mm2 SINE B2 2 173 -22 4 1302 335 298 8 42 chr5 94063827 94063946 -58473313 - RMER10B LTR ERVL -57 341 227 4 1302 31 26 0 0 chr5 94067382 94067420 -58469839 + AT_rich Low_complexity Low_complexity 1 38 0 4 1302 3363 185 47 1 chr5 94068227 94068892 -58468367 + Lx2B LINE L1 6203 6897 -103 4 1302 562 97 17 5 chr5 94068893 94068998 -58468261 + B1_Mus2 SINE Alu 44 149 0 4 1302 30 45 0 0 chr5 94069105 94069149 -58468110 + AT_rich Low_complexity Low_complexity 1 44 0 4 1302 190 100 32 48 chr5 94069166 94069229 -58468030 + (CAAA)n Simple_repeat Simple_repeat 3 64 0 4 1302 183 42 0 0 chr5 94069336 94069360 -58467899 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1302 248 170 0 19 chr5 94069360 94069414 -58467845 + A-rich Low_complexity Low_complexity 3 55 0 5 1302 239 316 66 99 chr5 94070211 94070362 -58466897 - B1F SINE Alu -1 148 3 5 1302 280 316 94 25 chr5 94070609 94070810 -58466449 + ID_B1 SINE B4 4 218 -6 5 1302 568 296 7 0 chr5 94070980 94071132 -58466127 + B3 SINE B2 61 213 -3 5 1302 485 326 0 0 chr5 94071161 94071293 -58465966 + B1_Mur1 SINE Alu 10 141 -8 5 1302 274 314 58 22 chr5 94071302 94071439 -58465820 + B1_Mur4 SINE Alu 1 142 -8 5 1302 247 387 96 8 chr5 94071463 94071477 -58465782 + B4 SINE B4 68 92 -200 5 1302 526 288 13 52 chr5 94071477 94071631 -58465628 + B1_Mus1 SINE Alu 1 148 0 5 1302 348 255 0 54 chr5 94071860 94072009 -58465250 - Lx7 LINE L1 -185 7511 7371 5 1302 1740 244 26 7 chr5 94072004 94072421 -58464838 + Lx4A LINE L1 6634 7058 0 6 1302 802 264 99 23 chr5 94072427 94072729 -58464530 - Lx7 LINE L1 -329 7367 7043 5 1302 33257 49 1 5 chr5 94072745 94078096 -58459163 + L1Md_T LINE L1 160 5589 -297 6 1302 8191 42 1 4 chr5 94078096 94079093 -58458166 + L1Md_T LINE L1 5590 6583 -2 6 1302 352 192 51 0 chr5 94079101 94079179 -58458080 - Lx7 LINE L1 -666 7030 6949 5 1302 504 45 0 0 chr5 94079232 94079299 -58457960 + (TC)n Simple_repeat Simple_repeat 2 68 0 6 1302 258 56 0 0 chr5 94079299 94079334 -58457925 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1302 1505 230 54 38 chr5 94079936 94080150 -58457109 - RMER16 LTR ERVK 0 533 320 6 1302 1962 173 35 0 chr5 94080150 94080544 -58456715 + Lx LINE L1 6240 6647 -7 6 1302 1505 225 31 84 chr5 94080544 94080778 -58456481 - RMER16 LTR ERVK -214 319 1 6 1302 220 349 52 78 chr5 94080904 94081019 -58456240 + PB1D7 SINE Alu 1 112 -8 6 1302 1598 218 40 0 chr5 94081110 94081464 -58455795 + Lx2B LINE L1 6240 6607 -393 6 1302 873 245 97 10 chr5 94081459 94081768 -58455491 + L1_Mur2 LINE L1 4649 4984 -893 6 1302 1507 79 18 0 chr5 94083285 94083512 -58453747 + L1_Mm LINE L1 5282 5512 -371 6 1302 1530 67 0 5 chr5 94083497 94083707 -58453552 - L1Md_F2 LINE L1 -99 6483 6275 7 1302 4698 78 15 14 chr5 94083707 94084440 -58452819 + IAPLTR4_I LTR ERVK 129 952 -6629 7 1302 1548 203 159 58 chr5 94084551 94085068 -58452191 + RMER16-int LTR ERVK 251 819 -4587 7 1302 291 279 107 9 chr5 94085073 94085185 -58452074 + RMER16-int LTR ERVK 938 1060 -5077 7 1302 295 267 0 55 chr5 94085198 94085289 -58451970 + ETnERV2-int LTR ERVK 2454 2539 -4867 7 1302 557 229 0 0 chr5 94085301 94085419 -58451840 + ETnERV2-int LTR ERVK 2635 2752 -4654 7 1302 1910 148 120 5 chr5 94085446 94086031 -58451228 + ETnERV2-int LTR ERVK 3567 4271 -3135 7 1302 401 204 22 2 chr5 94086036 94086157 -58451102 + RMER16-int LTR ERVK 2367 2464 -2380 7 1302 795 76 17 8 chr5 94086168 94086287 -58450972 + IAPEY3-int LTR ERVK 4530 4649 -2932 7 1302 3115 89 0 18 chr5 94086564 94087012 -58450247 + IAPEY3-int LTR ERVK 5203 5642 -1939 7 1302 3074 98 7 7 chr5 94087003 94087457 -58449802 + IAPEY3-int LTR ERVK 5761 6214 -1367 7 1302 3815 105 28 2 chr5 94087447 94088028 -58449231 + IAPEY3-int LTR ERVK 6743 7338 -342 7 1302 1273 185 61 20 chr5 94088045 94088388 -58448871 + IAPEz-int LTR ERVK 6125 6481 0 7 1302 1430 181 92 0 chr5 94088388 94088681 -58448578 + IAPEY3_LTR LTR ERVK 1 320 -12 7 1302 3468 158 54 35 chr5 94088688 94089423 -58447836 + RMER17D LTR ERVK 141 889 0 7 1302 803 145 7 0 chr5 94089423 94089561 -58447698 + RMER16-int LTR ERVK 4200 4338 -1068 7 1302 420 280 16 6 chr5 94089556 94089739 -58447520 + RLTR6-int LTR ERV1 7387 7571 -207 7 1302 288 38 75 0 chr5 94090132 94090185 -58447074 + (CAAAAA)n Simple_repeat Simple_repeat 4 60 0 7 1302 3306 202 46 1 chr5 94090320 94091087 -58446172 + L1_Mur2 LINE L1 3699 4499 -1378 8 1302 2078 168 60 7 chr5 94091553 94092002 -58445257 + L1_Mur2 LINE L1 4499 4971 -906 8 1302 11971 199 41 144 chr5 94092053 94092947 -58444312 + Lx5 LINE L1 1723 2600 -3277 8 1302 1188 180 131 21 chr5 94092947 94093237 -58444022 + RLTRETN_Mm LTR ERVK 1 322 0 8 1302 11971 199 41 144 chr5 94093237 94095299 -58441960 + Lx5 LINE L1 2601 4627 -1250 8 1302 2724 79 0 0 chr5 94095299 94095654 -58441605 + L1_Mus1 LINE L1 6213 6567 0 8 1302 11971 217 59 84 chr5 94095654 94096142 -58441117 + Lx5 LINE L1 4628 5135 -1915 8 1302 782 93 12 0 chr5 94096142 94096275 -58440984 + B1_Mm SINE Alu 10 149 0 8 1302 11971 217 59 84 chr5 94096275 94098113 -58439146 + Lx5 LINE L1 5136 7050 0 8 1302 227 323 21 63 chr5 94098181 94098323 -58438936 + Lx7 LINE L1 7516 7651 -45 8 1302 2601 237 87 69 chr5 94098365 94099308 -58437951 - MT-int LTR MaLR -135 963 4 8 1302 1186 138 6 0 chr5 94099338 94099519 -58437740 - MTC LTR MaLR -229 192 11 8 1302 405 39 0 0 chr5 94099523 94099574 -58437685 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1302 249 333 19 29 chr5 94099840 94099945 -58437314 + ID_B1 SINE B4 110 213 -11 8 1302 484 285 29 0 chr5 94100046 94100183 -58437076 + B1F SINE Alu 2 142 -7 9 1302 263 246 0 14 chr5 94100660 94100734 -58436525 + Lx9 LINE L1 7399 7471 -173 9 1302 1212 288 34 89 chr5 94100938 94101490 -58435769 - RMER5 LTR ERV1 -5 529 8 9 1302 5940 115 29 0 chr5 94102121 94103072 -58434187 - L1_Mm LINE L1 -633 5250 4272 9 1302 1209 131 10 10 chr5 94103073 94103266 -58433993 - B2_Mm1a SINE B2 0 193 1 9 1302 539 239 145 15 chr5 94103339 94103539 -58433720 + URR1A DNA MER1_type 1 226 0 9 162 27738 123 11 7 chr5 94104035 94109854 -58427405 - L1_Mus1 LINE L1 0 6567 725 9 1303 347 276 16 8 chr5 94109862 94109990 -58427269 - L1_Mus1 LINE L1 -5813 803 675 9 1303 279 282 8 16 chr5 94110116 94110242 -58427017 - L1VL1 LINE L1 -6022 400 276 9 1303 333 0 0 0 chr5 94110394 94110431 -58426828 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1303 266 173 80 0 chr5 94110437 94110512 -58426747 + Lx9 LINE L1 7563 7643 -1 9 1303 484 307 29 33 chr5 94110881 94111306 -58425953 - L1MA4A LINE L1 -376 5927 5497 9 1303 300 83 0 0 chr5 94111320 94111368 -58425891 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1303 747 62 0 0 chr5 94111368 94111464 -58425795 - B1_Mm SINE Alu 0 147 52 1 1303 383 290 9 0 chr5 94112310 94112417 -58424842 + ORR1D1 LTR MaLR 39 146 -228 1 1303 328 186 86 0 chr5 94112431 94112501 -58424758 + B3 SINE B2 6 81 -135 1 1303 627 208 38 19 chr5 94112518 94112675 -58424584 - MTD LTR MaLR 0 419 260 1 1303 1676 195 12 6 chr5 94112677 94113008 -58424251 + MTC-int LTR MaLR 475 807 -451 1 1303 539 177 10 0 chr5 94112998 94113094 -58424165 + MTC LTR MaLR 224 320 -101 1 1303 1730 195 77 13 chr5 94113098 94113473 -58423786 - RLTR9E LTR ERVK -5 404 6 1 1303 348 256 39 0 chr5 94113505 94113583 -58423676 + Lx5 LINE L1 6800 6880 -170 1 1303 341 134 134 0 chr5 94113619 94113686 -58423573 + MTC LTR MaLR 346 421 0 1 1303 244 221 21 21 chr5 94114004 94114101 -58423158 + (TA)n Simple_repeat Simple_repeat 1 97 0 1 1303 5320 113 15 12 chr5 94114194 94114977 -58422282 + L1_Mus3 LINE L1 5886 6638 0 1 1303 448 216 10 0 chr5 94115075 94115172 -58422087 - MTC-int LTR MaLR -252 1006 909 1 1303 630 191 35 7 chr5 94115244 94115386 -58421873 + L1_Mur2 LINE L1 5048 5193 -684 1 1303 5155 66 1 6 chr5 94115378 94116037 -58421222 - L1Md_F2 LINE L1 -428 5455 4800 1 1303 1079 69 0 0 chr5 94116034 94116165 -58421094 + L1Md_F2 LINE L1 5453 5583 -300 1 1303 8545 48 13 0 chr5 94116168 94117151 -58420108 + L1Md_F2 LINE L1 5587 6582 0 1 1303 23 0 0 0 chr5 94117151 94117174 -58420085 + AT_rich Low_complexity Low_complexity 1 23 0 1 1303 2841 92 0 0 chr5 94117183 94117565 -58419694 - L1_Mm LINE L1 -745 5138 4757 1 1303 321 140 20 0 chr5 94117569 94117619 -58419640 + Lx4B LINE L1 6467 6517 -541 1 1303 1773 256 111 20 chr5 94117637 94118179 -58419080 - Lx5 LINE L1 -17 7033 6443 1 1303 3206 231 23 50 chr5 94118181 94118601 -58418658 + Lx5 LINE L1 5027 5436 -441 1 1303 660 88 0 50 chr5 94118601 94118721 -58418538 + L1Md_F3 LINE L1 6470 6583 -1 1 1303 6256 232 18 35 chr5 94118721 94119903 -58417356 + Lx5 LINE L1 5437 6621 -429 1 1303 1457 242 140 44 chr5 94119903 94120310 -58416949 + RLTR41 LTR ERV1 1 446 0 1 1303 6256 233 16 25 chr5 94120310 94120760 -58416499 + Lx5 LINE L1 6622 7050 0 1 1303 8713 26 0 0 chr5 94120892 94121991 -58415268 - L1Md_T LINE L1 0 6582 5484 1 1303 21 57 0 0 chr5 94122279 94122314 -58414945 + AT_rich Low_complexity Low_complexity 1 35 0 1 1303 435 299 42 0 chr5 94122814 94122948 -58414311 + B2_Mm2 SINE B2 1 149 -67 1 1303 442 304 40 29 chr5 94123257 94123430 -58413829 - B3A SINE B2 -16 182 8 1 1303 354 298 33 77 chr5 94123407 94123589 -58413670 - RMER10B LTR ERVL -12 386 213 1 1303 3362 216 68 1 chr5 94127052 94127791 -58409468 + Lx2B LINE L1 6210 6997 -3 1 1303 230 281 0 10 chr5 94127793 94127890 -58409369 + A-rich Low_complexity Low_complexity 2 97 0 1 1303 995 211 23 18 chr5 94128734 94128951 -58408308 + L1_Mur2 LINE L1 5453 5670 -207 1 1303 689 287 72 122 chr5 94128974 94129179 -58408080 + Lx7 LINE L1 7033 7223 -473 1 1303 1148 103 0 0 chr5 94129179 94129325 -58407934 - B1_Mus1 SINE Alu 0 148 3 1 1303 689 287 72 122 chr5 94129325 94129603 -58407656 + Lx7 LINE L1 7224 7492 -204 1 1303 282 276 153 8 chr5 94129724 94129848 -58407411 - B1F2 SINE Alu -1 148 7 1 1303 212 271 131 110 chr5 94129725 94129870 -58407389 - B4 SINE B4 -69 223 76 1 1303 587 233 8 0 chr5 94129870 94130003 -58407256 + Lx7 LINE L1 7561 7694 -2 1 1303 305 310 11 0 chr5 94130020 94130107 -58407152 + B3 SINE B2 1 88 -128 1 1303 1179 165 39 51 chr5 94131606 94131853 -58405406 - L1_Mus4 LINE L1 -502 6134 5891 1 1303 1027 84 12 49 chr5 94131853 94132016 -58405243 + L1_Mus3 LINE L1 6475 6631 -7 1 1303 312 246 130 41 chr5 94132511 94132634 -58404625 - RSINE1 SINE B4 -29 136 3 1 1303 417 265 21 64 chr5 94132727 94132868 -58404391 - B1_Mm SINE Alu -2 145 11 1 1303 595 234 20 20 chr5 94132897 94133045 -58404214 - B1_Mus1 SINE Alu 0 148 1 1 1303 268 373 7 14 chr5 94133048 94133192 -58404067 - B1_Mur1 SINE Alu -4 145 3 1 1303 467 331 0 0 chr5 94133216 94133367 -58403892 - B3 SINE B2 -6 210 60 1 1303 282 349 94 35 chr5 94133526 94133728 -58403531 - ID_B1 SINE B4 -10 214 1 1 1303 250 356 0 65 chr5 94133978 94134101 -58403158 + PB1D7 SINE Alu 1 115 -5 1 1303 455 0 18 0 chr5 94134789 94134844 -58402415 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1303 231 88 0 0 chr5 94135118 94135152 -58402107 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1303 232 354 95 51 chr5 94136997 94137023 -58400236 + B4 SINE B4 69 100 -192 1 1303 386 348 68 0 chr5 94137023 94137141 -58400118 + B1_Mur1 SINE Alu 3 128 -21 1 1303 225 192 19 0 chr5 94137150 94137202 -58400057 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1303 1543 244 72 5 chr5 94137205 94137592 -58399667 - MTC LTR MaLR -8 413 1 1 1303 432 254 66 66 chr5 94137597 94137795 -58399464 - MTC-int LTR MaLR -6 1252 1055 1 1303 7476 193 51 16 chr5 94138037 94139090 -58398169 + L1_Mur2 LINE L1 904 2047 -3830 1 1303 618 51 0 0 chr5 94139090 94139168 -58398091 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1303 7476 194 50 11 chr5 94139168 94140061 -58397198 + L1_Mur2 LINE L1 2048 2982 -2895 1 1303 6070 84 30 4 chr5 94140063 94140849 -58396410 + L1_Mus1 LINE L1 5760 6566 -1 1 1303 5504 47 16 0 chr5 94140848 94141492 -58395767 + L1Md_F3 LINE L1 5931 6584 0 1 1303 733 254 108 78 chr5 94141521 94141816 -58395443 + L1_Mur1 LINE L1 11 314 -6668 1 1303 1368 157 5 0 chr5 94141815 94142032 -58395227 + L1_Mus4 LINE L1 6187 6404 -232 1 1303 4017 101 0 2 chr5 94142028 94142584 -58394675 + L1_Mur1 LINE L1 4487 5041 -845 1 1303 3886 242 11 24 chr5 94142605 94143523 -58393736 + Lx5 LINE L1 6144 7049 -1 1 1303 561 269 0 23 chr5 94144467 94144600 -58392659 + B2_Mm2 SINE B2 2 131 -64 1 1303 479 284 63 29 chr5 94144919 94145093 -58392166 - B3A SINE B2 -13 185 6 1 1303 25892 141 63 10 chr5 94148152 94149690 -58387569 + L1Md_A LINE L1 467 1967 -3916 1 1303 378 17 51 0 chr5 94149690 94149749 -58387510 + (CAAA)n Simple_repeat Simple_repeat 2 63 0 1 1303 25892 86 116 16 chr5 94149749 94151680 -58385579 + L1Md_A LINE L1 1968 4172 -1711 1 1303 233 185 36 18 chr5 94151680 94151735 -58385524 - Charlie24 DNA MER1_type -1136 1314 1259 1 1303 25892 86 116 16 chr5 94151735 94152971 -58384288 + L1Md_A LINE L1 4173 5586 -297 1 1303 7968 72 5 4 chr5 94152971 94153950 -58383309 + L1Md_F2 LINE L1 5587 6566 -16 1 1303 2625 129 2 7 chr5 94154835 94155241 -58382018 - L1_Mus4 LINE L1 -183 6453 6050 1 1303 501 293 31 31 chr5 94155394 94155651 -58381608 - RLTR6-int LTR ERV1 -135 7643 7387 1 1303 847 159 7 0 chr5 94155646 94155784 -58381475 - RMER16-int LTR ERVK -1068 4338 4200 1 1303 3850 169 28 33 chr5 94155784 94156581 -58380678 - RMER17D LTR ERVK 0 889 97 1 1303 7837 59 8 7 chr5 94156581 94157882 -58379377 - L1Md_F3 LINE L1 -2 6582 5282 1 1303 227 189 0 0 chr5 94158272 94158309 -58378950 - RMER10A LTR ERVL -394 48 12 1 1303 1088 229 97 10 chr5 94159393 94159702 -58377557 - L1_Mur2 LINE L1 -893 4984 4649 1 1303 1729 216 34 0 chr5 94159697 94160053 -58377206 - Lx2B LINE L1 -393 6607 6240 1 1303 213 291 45 102 chr5 94160158 94160246 -58377013 - PB1D7 SINE Alu -25 95 13 1 1303 1436 225 32 83 chr5 94160384 94160615 -58376644 + RMER16 LTR ERVK 1 322 -211 1 1303 2280 159 33 0 chr5 94160615 94161010 -58376249 - Lx LINE L1 -7 6647 6240 1 1303 1436 243 57 33 chr5 94161010 94161224 -58376035 + RMER16 LTR ERVK 323 533 0 1 1303 414 39 0 0 chr5 94161820 94161872 -58375387 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1303 225 0 0 0 chr5 94161877 94161902 -58375357 + (GA)n Simple_repeat Simple_repeat 2 26 0 1 1303 1514 253 108 4 chr5 94161908 94162364 -58374895 + Lx7 LINE L1 6912 7414 -282 1 1303 1920 228 31 12 chr5 94162416 94162833 -58374426 - Lx4A LINE L1 0 7058 6634 1 1303 418 223 13 67 chr5 94162828 94162977 -58374282 + Lx7 LINE L1 7371 7511 -185 1 1303 603 241 10 8 chr5 94163221 94163364 -58373895 - B1_Mus2 SINE Alu -5 145 1 1 1303 365 289 49 49 chr5 94163402 94163544 -58373715 - B1_Mur4 SINE Alu -8 142 1 1 1303 456 328 8 0 chr5 94163548 94163679 -58373580 - B1_Mur1 SINE Alu -8 141 10 1 1303 618 291 0 0 chr5 94163709 94163860 -58373399 - B3 SINE B2 -6 210 60 1 1303 377 323 85 15 chr5 94164029 94164230 -58373029 - ID_B1 SINE B4 -6 218 4 1 1303 284 226 66 123 chr5 94164477 94164583 -58372676 + PB1D7 SINE Alu 3 102 -18 1 1303 412 244 8 8 chr5 94165422 94165550 -58371709 + T-rich Low_complexity Low_complexity 3 130 0 1 1303 183 42 0 0 chr5 94165550 94165574 -58371685 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1303 180 65 20 61 chr5 94165681 94165730 -58371529 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1303 26 30 0 0 chr5 94165753 94165786 -58371473 + AT_rich Low_complexity Low_complexity 1 33 0 1 1303 253 235 0 36 chr5 94165798 94165882 -58371377 - Lx3B LINE L1 -5 6968 6888 1 1303 928 104 97 0 chr5 94165891 94166025 -58371234 - B1_Mus1 SINE Alu 0 148 2 1 1303 3763 202 46 3 chr5 94166035 94166796 -58370463 - Lx2B LINE L1 -4 6996 6203 1 1303 24 53 0 0 chr5 94167607 94167645 -58369614 + AT_rich Low_complexity Low_complexity 1 38 0 1 1303 288 314 10 19 chr5 94171048 94171152 -58366107 + RMER10B LTR ERVL 213 315 -83 1 1303 595 250 31 78 chr5 94171602 94171793 -58365466 - B2_Mm2 SINE B2 -12 183 2 1 1303 36439 87 15 13 chr5 94171883 94178232 -58359027 - L1Md_F2 LINE L1 0 6582 7 1 1303 828 194 28 7 chr5 94178238 94178383 -58358876 - B1_Mur3 SINE Alu -1 148 1 1 1303 493 275 28 7 chr5 94178391 94178534 -58358725 + Lx7 LINE L1 7548 7693 -3 1 1303 448 267 14 32 chr5 94178552 94178746 -58358513 + B3 SINE B2 1 186 -9 1 1303 630 246 200 6 chr5 94178781 94178961 -58358298 - B3 SINE B2 -1 215 1 1 1303 2730 133 8 171 chr5 94179298 94179924 -58357335 + RMER2 LTR ERV1 44 567 0 1 1303 2157 138 3 3 chr5 94180654 94181011 -58356248 - MusHAL1 LINE L1 -636 2076 1720 2 1303 351 0 0 0 chr5 94181099 94181138 -58356121 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 1303 333 276 30 30 chr5 94181749 94181880 -58355379 + MuRRS4-int LTR ERV1 1302 1432 -3631 2 1303 480 322 61 11 chr5 94182591 94182921 -58354338 + MURVY-int LTR ERV1 4019 4360 -3241 2 1303 1293 293 62 5 chr5 94183198 94183634 -58353625 + MuRRS4-int LTR ERV1 3556 3954 -1109 2 1303 3377 145 16 18 chr5 94184066 94184629 -58352630 + RMER2 LTR ERV1 1 562 -5 2 1303 2786 152 80 12 chr5 94184736 94185237 -58352022 - RLTR33 LTR ERVK -143 535 1 2 1303 261 175 161 12 chr5 94185474 94185555 -58351704 - RSINE1 SINE B4 -69 96 4 2 1303 672 193 32 58 chr5 94185612 94185766 -58351493 - B1_Mur4 SINE Alu 0 150 1 2 1303 276 311 73 36 chr5 94185800 94185937 -58351322 - B1_Mur3 SINE Alu -7 142 1 2 1303 334 377 0 0 chr5 94185946 94186076 -58351183 - B1_Mur1 SINE Alu -8 141 12 2 1303 492 275 84 28 chr5 94186108 94186250 -58351009 - B3 SINE B2 -7 209 60 2 1303 241 339 76 30 chr5 94186411 94186542 -58350717 - B1F SINE Alu 0 149 13 2 1303 490 314 87 25 chr5 94186425 94186621 -58350638 - ID_B1 SINE B4 -12 212 5 2 1303 242 286 15 145 chr5 94186875 94187006 -58350253 + PB1D7 SINE Alu 3 116 -4 2 1303 256 225 38 29 chr5 94187912 94188017 -58349242 + T-rich Low_complexity Low_complexity 4 109 0 2 1303 265 279 0 0 chr5 94188039 94188125 -58349134 - Lx3B LINE L1 0 6973 6888 2 1303 801 116 6 58 chr5 94188163 94188319 -58348940 - Lx LINE L1 -15 6639 6492 2 1303 237 65 0 0 chr5 94188321 94188352 -58348907 - Lx2 LINE L1 -218 6779 6749 2 1303 3003 183 70 7 chr5 94188351 94188935 -58348324 - Lx2B LINE L1 -41 6959 6339 2 1303 189 0 0 0 chr5 94188937 94188958 -58348301 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1303 6938 108 12 2 chr5 94188984 94190177 -58347082 - L1_Mus1 LINE L1 0 6567 5363 2 1303 1123 105 0 14 chr5 94190177 94190322 -58346937 - B1_Mus1 SINE Alu -5 143 1 2 1303 675 208 6 45 chr5 94190324 94190443 -58346816 - Lx2B LINE L1 -648 6352 6238 2 1303 3953 135 29 77 chr5 94190443 94191232 -58346027 - RMER17A LTR ERVK 0 751 1 2 1303 675 208 6 45 chr5 94191232 94191268 -58345991 - Lx2B LINE L1 -763 6237 6203 2 1303 7433 74 6 0 chr5 94191302 94192257 -58345002 - L1Md_F2 LINE L1 0 6582 5622 2 1303 9923 103 21 27 chr5 94192257 94193769 -58343490 + MMETn-int LTR ERVK 3342 4844 0 2 1303 2024 132 9 51 chr5 94193769 94194105 -58343154 + RLTRETN_Mm LTR ERVK 1 322 0 2 1303 32058 107 3 6 chr5 94194105 94199318 -58337941 - L1Md_F2 LINE L1 -262 5621 467 2 1303 6575 76 1 6 chr5 94201351 94202209 -58335050 + L1Md_F2 LINE L1 4732 5585 -298 2 1303 8499 51 2 6 chr5 94202210 94203198 -58334061 + L1Md_F2 LINE L1 5587 6570 -12 2 1303 477 284 63 29 chr5 94204209 94204383 -58332876 + B3A SINE B2 6 185 -13 2 1303 578 269 0 23 chr5 94204702 94204835 -58332424 - B2_Mm2 SINE B2 -64 131 2 2 1303 192 40 0 0 chr5 94204978 94205003 -58332256 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1303 3790 245 12 25 chr5 94205781 94206699 -58330560 - Lx5 LINE L1 -1 7049 6144 2 1303 3866 108 2 5 chr5 94206720 94207277 -58329982 - L1_Mur1 LINE L1 -845 5041 4487 2 1303 1447 134 5 0 chr5 94207273 94207490 -58329769 - L1_Mus4 LINE L1 -232 6404 6187 2 1303 713 232 113 69 chr5 94207489 94207780 -58329479 - L1_Mur1 LINE L1 -6668 314 11 2 1303 3718 52 14 0 chr5 94207810 94208250 -58329009 - L1Md_F3 LINE L1 0 6584 6139 2 1303 580 231 23 8 chr5 94208315 94208446 -58328813 + RLTR9E LTR ERVK 277 409 0 2 1303 555 170 9 28 chr5 94208446 94208550 -58328709 - MTC LTR MaLR -103 318 217 2 1303 1626 228 41 13 chr5 94208530 94208921 -58328338 - MTC-int LTR MaLR -451 807 406 2 1303 1270 263 60 27 chr5 94209020 94209422 -58327837 + MTD LTR MaLR 5 419 0 2 1303 318 200 86 0 chr5 94209439 94209509 -58327750 - B3 SINE B2 -135 81 6 2 1303 381 292 37 30 chr5 94209530 94209664 -58327595 - MTC LTR MaLR -233 137 3 2 1303 27556 110 9 5 chr5 94209792 94214672 -58322587 + L1_Mus1 LINE L1 1671 6654 0 2 1303 925 200 130 0 chr5 94215195 94215395 -58321864 - URR1A DNA MER1_type 0 226 1 2 1303 5179 112 13 0 chr5 94215695 94216402 -58320857 - L1_Mus3 LINE L1 -7 6631 5916 2 1303 319 73 0 5 chr5 94216402 94216455 -58320804 - PB1D9 SINE Alu -94 55 4 2 1303 5118 110 7 1 chr5 94216455 94217255 -58320004 - L1VL1 LINE L1 -1934 1764 964 2 1303 1452 61 55 0 chr5 94217255 94217436 -58319823 - B2_Mm2 SINE B2 -3 192 2 2 1303 3628 141 165 9 chr5 94217436 94218035 -58319224 - L1VL1 LINE L1 -5459 963 246 2 1303 678 255 130 50 chr5 94218205 94218362 -58318897 - MTEb LTR MaLR -53 326 167 2 1303 2773 97 79 0 chr5 94218362 94218743 -58318516 - RLTR10A LTR ERVK 0 411 1 2 1303 678 255 130 50 chr5 94218743 94218886 -58318373 - MTEb LTR MaLR -213 166 2 2 1303 4139 57 0 0 chr5 94218894 94219369 -58317890 + MT2C_Mm LTR ERVL 1 475 0 2 1303 478 222 79 36 chr5 94219730 94219870 -58317389 + B1_Mus2 SINE Alu 2 147 0 2 1303 727 345 61 23 chr5 94219905 94220249 -58317010 + MTEa LTR MaLR 3 359 -20 2 1303 401 129 29 0 chr5 94220316 94220386 -58316873 - Lx2B LINE L1 -590 6410 6339 2 1303 189 0 0 0 chr5 94220388 94220409 -58316850 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1303 7619 76 2 11 chr5 94220435 94221480 -58315779 - L1_Mus1 LINE L1 0 6567 5540 2 1303 635 321 32 92 chr5 94221620 94221990 -58315269 + RMER5 LTR ERV1 13 360 -174 2 1303 3191 93 7 0 chr5 94221991 94222400 -58314859 - L1_Mus1 LINE L1 0 6567 6156 2 1303 3513 52 0 0 chr5 94222404 94222861 -58314398 + L1Md_F2 LINE L1 5655 6111 -471 2 1303 586 236 41 46 chr5 94222881 94223076 -58314183 + RMER5 LTR ERV1 331 524 -10 2 1303 189 26 0 73 chr5 94223077 94223118 -58314141 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2 1303 336 312 19 19 chr5 94223322 94223528 -58313731 - Lx9 LINE L1 -161 7483 7278 2 1303 481 285 29 0 chr5 94223864 94224001 -58313258 - B1F SINE Alu -7 142 2 2 1303 365 314 93 10 chr5 94224103 94224296 -58312963 - ID_B1 SINE B4 -11 213 5 2 1303 227 122 0 20 chr5 94224473 94224513 -58312746 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1303 606 28 0 0 chr5 94224513 94224585 -58312674 + (GA)n Simple_repeat Simple_repeat 1 72 0 2 1303 227 122 0 20 chr5 94224585 94224594 -58312665 + (TG)n Simple_repeat Simple_repeat 2 10 0 2 1303 962 146 79 0 chr5 94224594 94224758 -58312501 + MTC LTR MaLR 12 188 -233 2 1303 2470 237 97 62 chr5 94224791 94225718 -58311541 + MT-int LTR MaLR 4 963 -135 2 1303 479 271 93 42 chr5 94225725 94225941 -58311318 - Lx6 LINE L1 -26 7434 7208 2 1303 15931 203 76 15 chr5 94225962 94230688 -58306571 - Lx5 LINE L1 -2 7048 2055 2 1303 279 79 0 0 chr5 94230688 94230726 -58306533 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1303 15931 186 67 16 chr5 94230726 94231021 -58306238 - Lx5 LINE L1 -3823 2054 1723 2 1303 2512 126 56 19 chr5 94231073 94231535 -58305724 - L1_Mur2 LINE L1 -907 4970 4492 2 1303 2735 173 238 45 chr5 94231997 94232511 -58304748 - L1_Mur2 LINE L1 -1378 4499 3810 2 1303 899 109 70 0 chr5 94232511 94232639 -58304620 - B1_Mus2 SINE Alu -10 137 1 2 1303 2735 173 238 45 chr5 94232639 94232907 -58304352 - L1_Mur2 LINE L1 -2068 3809 3545 2 1303 401 254 214 71 chr5 94232907 94233229 -58304030 - RLTR9A LTR ERVK 0 368 1 2 1303 2735 173 238 45 chr5 94233229 94233291 -58303968 - L1_Mur2 LINE L1 -2333 3544 3491 2 1303 33826 35 0 0 chr5 94233321 94238758 -58298501 + L1Md_T LINE L1 56 5589 -297 2 1303 9027 5 0 0 chr5 94238758 94239754 -58297505 + L1Md_T LINE L1 5590 6585 0 2 1303 738 194 103 7 chr5 94239789 94239934 -58297325 - ORR1A2 LTR MaLR -68 259 101 2 1303 1507 215 43 2 chr5 94239934 94240330 -58296929 - L1_Mur2 LINE L1 -3949 1931 1520 2 162 2036 232 28 2 chr5 94240495 94240927 -58296332 - RLTR21 LTR ERVK -1124 448 6 2 1304 1202 181 61 10 chr5 94241221 94241517 -58295742 - MYSERV6-int LTR ERVK -1250 7709 7399 2 1304 782 197 27 11 chr5 94241560 94241745 -58295514 - B2_Mm2 SINE B2 -6 189 2 2 1304 338 149 15 15 chr5 94241773 94241841 -58295418 - ORR1A4 LTR MaLR -8 321 254 2 1304 439 259 28 14 chr5 94241828 94241973 -58295286 - RLTR12B LTR ERVK -341 187 41 2 1304 1296 246 46 71 chr5 94241995 94242561 -58294698 - MYSERV6-int LTR ERVK -56 8903 8426 2 1304 249 33 0 0 chr5 94242562 94242592 -58294667 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 1304 967 163 17 11 chr5 94242708 94242882 -58294377 - B2_Mm2 SINE B2 -20 175 1 2 1304 1105 185 28 8 chr5 94242882 94243133 -58294126 - L1_Mur2 LINE L1 -3864 2013 1758 2 1304 5532 127 50 19 chr5 94243133 94243869 -58293390 + L1VL2 LINE L1 38 784 -5551 2 1304 2956 51 0 0 chr5 94243869 94244241 -58293018 - L1Md_F3 LINE L1 -14 6570 6199 2 1304 5532 91 64 7 chr5 94244241 94244564 -58292695 + L1VL2 LINE L1 785 1127 -2488 2 1304 367 243 67 73 chr5 94244678 94244832 -58292427 - RLTR13D3 LTR ERVK 0 1114 981 2 1304 1441 54 0 21 chr5 94245281 94245470 -58291789 + B2_Mm1t SINE B2 2 186 -7 2 1304 5603 128 44 4 chr5 94245887 94247202 -58290057 - Lx LINE L1 0 6638 5314 2 1304 3599 66 4 6 chr5 94247219 94247691 -58289568 - L1Md_F2 LINE L1 -13 6569 6099 2 1304 6683 71 0 6 chr5 94247691 94248833 -58288426 + L1Md_F2 LINE L1 4951 6086 -498 2 1304 20691 95 25 10 chr5 94248831 94253471 -58283788 - Lx LINE L1 -580 5306 233 2 1304 348 271 39 39 chr5 94254705 94254832 -58282427 + RMER10B LTR ERVL 216 342 -56 2 1304 351 347 23 65 chr5 94254857 94255073 -58282186 + B3 SINE B2 6 212 -4 2 1304 760 195 32 64 chr5 94255358 94255577 -58281682 + RMER3D-int LTR ERVK 1998 2209 -633 2 1304 459 250 36 68 chr5 94255642 94255797 -58281462 - Lx7 LINE L1 0 7696 7543 2 1304 477 229 114 0 chr5 94255797 94255928 -58281331 + B1_Mus2 SINE Alu 1 146 -1 2 1304 459 250 36 68 chr5 94255928 94255991 -58281268 - Lx7 LINE L1 -154 7542 7485 2 1304 306 206 0 88 chr5 94255991 94256010 -58281249 + B4 SINE B4 72 144 -148 2 1304 360 136 0 33 chr5 94256010 94256071 -58281188 + PB1D9 SINE Alu 1 59 -61 2 1304 230 202 59 84 chr5 94256163 94256282 -58280977 + RLTR25B LTR ERVK 397 512 -516 2 1304 757 86 0 9 chr5 94256207 94256313 -58280946 + B1_Mus2 SINE Alu 42 146 -1 2 1304 28 0 0 0 chr5 94256328 94256356 -58280903 + AT_rich Low_complexity Low_complexity 1 28 0 2 1304 797 284 38 63 chr5 94256401 94256799 -58280460 - Lx7 LINE L1 -273 7423 7036 2 1304 6963 226 34 19 chr5 94256822 94258864 -58278395 - L1_Mur2 LINE L1 -207 5670 3598 2 1304 528 170 0 0 chr5 94258864 94258970 -58278289 + (TAGA)n Simple_repeat Simple_repeat 2 107 0 2 1304 10142 128 13 35 chr5 94259216 94260172 -58277087 - L1_Mus3 LINE L1 -7 6631 5686 2 1304 1231 101 70 5 chr5 94260172 94260372 -58276887 + L1Md_F2 LINE L1 6368 6580 -2 3 1304 10142 160 33 106 chr5 94260372 94261035 -58276224 - L1_Mus3 LINE L1 -198 5685 5116 2 1304 1087 103 0 0 chr5 94261035 94261181 -58276078 - B1_Mus2 SINE Alu 0 147 2 3 1304 10142 160 33 106 chr5 94261181 94262018 -58275241 - L1_Mus3 LINE L1 -768 5115 4272 2 1304 409 167 0 35 chr5 94262018 94262105 -58275154 - B2_Mm2 SINE B2 -17 178 95 3 1304 10142 160 33 106 chr5 94262105 94262845 -58274414 - L1_Mus3 LINE L1 -768 4271 3523 2 1304 1338 112 9 0 chr5 94262840 94263101 -58274158 - L1VL1 LINE L1 -2544 1154 892 3 1304 730 123 9 0 chr5 94263127 94263241 -58274018 - B1_Mm SINE Alu 0 147 33 3 1304 1105 72 114 0 chr5 94263261 94263427 -58273832 - B2_Mm1a SINE B2 -7 186 2 3 1304 229 146 0 0 chr5 94263427 94263468 -58273791 - L1_Mus3 LINE L1 -5506 1110 1070 2 1304 269 290 29 157 chr5 94263465 94263637 -58273622 + L1VL1 LINE L1 208 357 -6065 3 1304 329 281 21 14 chr5 94263705 94263846 -58273413 + L1_Mus1 LINE L1 662 803 -5813 3 1304 1871 178 27 109 chr5 94263855 94264343 -58272916 + L1_Mus1 LINE L1 726 1207 -5409 3 1304 249 57 0 0 chr5 94264343 94264378 -58272881 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1304 27692 117 11 25 chr5 94264378 94267412 -58269847 + L1_Mus1 LINE L1 1174 4196 -1687 3 1304 315 0 0 0 chr5 94267412 94267447 -58269812 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1304 27692 116 11 24 chr5 94267447 94268735 -58268524 + L1_Mus1 LINE L1 4197 5498 -385 3 1304 1004 123 7 0 chr5 94268735 94268881 -58268378 + B1_Mus2 SINE Alu 1 147 0 3 1304 1208 48 0 20 chr5 94268885 94269035 -58268224 + B1_Mm SINE Alu 1 147 0 3 1304 606 79 0 0 chr5 94269039 94269128 -58268131 + (GA)n Simple_repeat Simple_repeat 2 90 0 3 1304 27692 116 11 24 chr5 94269128 94269163 -58268096 + L1_Mus1 LINE L1 5499 5499 -384 3 1304 945 103 81 0 chr5 94269163 94269299 -58267960 + B1_Mus2 SINE Alu 1 147 0 3 1304 27692 78 11 39 chr5 94269299 94270285 -58266974 + L1_Mus1 LINE L1 5499 6431 -136 3 1304 1129 68 7 0 chr5 94270285 94270431 -58266828 - B1_Mus2 SINE Alu 0 147 1 3 1304 6690 73 11 42 chr5 94270431 94270577 -58266682 + L1_Mus1 LINE L1 6432 6567 0 3 1304 213 301 68 0 chr5 94270777 94270850 -58266409 - PB1D7 SINE Alu -2 118 41 3 1304 220 167 0 0 chr5 94270942 94270978 -58266281 + B3 SINE B2 2 37 -179 3 1304 266 276 0 0 chr5 94270994 94271052 -58266207 - B3 SINE B2 -129 87 30 3 1304 413 217 153 15 chr5 94271072 94271203 -58266056 + B1F2 SINE Alu 1 149 0 3 1304 248 91 23 0 chr5 94271203 94271247 -58266012 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 3 1304 900 270 19 100 chr5 94271257 94271328 -58265931 - Lx7 LINE L1 -174 7522 7458 3 1304 207 0 0 0 chr5 94271328 94271351 -58265908 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1304 900 270 19 100 chr5 94271351 94271801 -58265458 - Lx7 LINE L1 -239 7457 7043 3 1304 3433 231 13 35 chr5 94271814 94272482 -58264777 - L1_Mur2 LINE L1 -206 5671 5019 3 1304 2613 133 38 40 chr5 94272482 94272958 -58264301 + MT2C_Mm LTR ERVL 1 475 0 3 1304 3433 231 13 35 chr5 94272958 94273335 -58263924 - L1_Mur2 LINE L1 -859 5018 4649 3 1304 1770 176 16 53 chr5 94273330 94273602 -58263657 - Lx2B LINE L1 -393 6607 6338 3 1304 929 161 0 0 chr5 94273602 94273745 -58263514 + B1_Mus1 SINE Alu 1 143 -5 3 1304 1770 176 16 53 chr5 94273745 94273850 -58263409 - Lx2B LINE L1 -663 6337 6244 3 1304 259 369 8 59 chr5 94273945 94274063 -58263196 - PB1D7 SINE Alu -8 112 1 3 1304 1450 235 76 17 chr5 94274212 94274413 -58262846 + RMER16 LTR ERVK 103 326 -207 3 1304 2067 162 56 2 chr5 94274413 94274809 -58262450 - Lx LINE L1 -7 6647 6231 3 1304 1450 235 76 17 chr5 94274809 94275014 -58262245 + RMER16 LTR ERVK 327 532 -1 3 1304 220 423 32 16 chr5 94275480 94275605 -58261654 + B3A SINE B2 25 151 -47 3 1304 210 37 0 0 chr5 94275620 94275647 -58261612 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1304 1061 265 114 40 chr5 94275647 94276075 -58261184 + Lx7 LINE L1 6902 7361 -335 3 1304 1747 249 9 7 chr5 94276110 94276534 -58260725 - Lx4A LINE L1 0 7058 6634 3 1304 365 227 12 72 chr5 94276514 94276680 -58260579 + Lx7 LINE L1 7356 7511 -185 3 1304 275 262 93 37 chr5 94276741 94276848 -58260411 - RSINE1 SINE B4 -35 130 18 3 1304 570 238 8 8 chr5 94276921 94277048 -58260211 - B1_Mm SINE Alu 0 147 21 3 1304 426 225 53 60 chr5 94277092 94277243 -58260016 - B1_Mur4 SINE Alu 0 150 1 3 1304 392 382 0 0 chr5 94277252 94277388 -58259871 - B1_Mur1 SINE Alu -8 141 6 3 1304 960 109 0 35 chr5 94277417 94277559 -58259700 + B1_Mus1 SINE Alu 1 137 -11 3 1304 219 36 0 0 chr5 94277559 94277587 -58259672 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1304 575 311 0 0 chr5 94277591 94277742 -58259517 - B3 SINE B2 -5 211 61 3 1304 250 342 58 75 chr5 94277932 94278052 -58259207 - B1F SINE Alu -28 121 4 3 1304 313 263 9 92 chr5 94278377 94278486 -58258773 + PB1D7 SINE Alu 3 102 -18 3 1304 201 279 0 0 chr5 94279408 94279437 -58257822 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 1304 201 39 0 0 chr5 94279437 94279463 -58257796 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1304 201 279 0 0 chr5 94279463 94279512 -58257747 + (TTTG)n Simple_repeat Simple_repeat 3 51 0 3 1304 317 182 61 0 chr5 94279543 94279609 -58257650 - Lx3B LINE L1 -6 6967 6898 3 1304 3350 203 78 4 chr5 94279623 94280356 -58256903 - Lx2B LINE L1 -11 6989 6203 3 1304 3497 89 45 4 chr5 94280365 94280828 -58256431 + RLTR45 LTR ERVK 1 482 0 3 1304 243 203 0 0 chr5 94281654 94281728 -58255531 + (TAA)n Simple_repeat Simple_repeat 1 74 0 3 1304 1142 91 0 0 chr5 94281853 94281996 -58255263 + B1_Mus2 SINE Alu 5 147 0 3 1304 189 0 0 0 chr5 94283237 94283258 -58254001 + (CTTG)n Simple_repeat Simple_repeat 2 22 0 3 1304 342 0 0 0 chr5 94283256 94283294 -58253965 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1304 617 156 101 0 chr5 94283294 94283403 -58253856 - PB1D9 SINE Alu 0 120 1 3 1304 7337 55 2 0 chr5 94285604 94286535 -58250724 + L1_Mm LINE L1 2424 3356 -2527 3 1304 456 323 30 6 chr5 94286544 94286709 -58250550 + B3A SINE B2 8 176 -22 3 1304 30 0 0 0 chr5 94286746 94286776 -58250483 + AT_rich Low_complexity Low_complexity 1 30 0 3 1304 857 216 39 162 chr5 94286845 94287204 -58250055 - RLTRETN_Mm LTR ERVK 0 322 8 3 1304 632 225 5 80 chr5 94287361 94287549 -58249710 - B2_Mm2 SINE B2 -21 174 1 3 1304 3682 60 23 2 chr5 94287683 94288120 -58249139 - L1_Mus1 LINE L1 0 6567 6122 3 1304 207 286 171 67 chr5 94288260 94288365 -58248894 + L2b LINE L2 3238 3353 -22 3 1304 1255 68 0 0 chr5 94288546 94288694 -58248565 + B1_Mus1 SINE Alu 1 148 0 3 1304 225 218 93 65 chr5 94289775 94289883 -58247376 + MURVY-LTR LTR ERV1 351 461 -58 3 1304 467 184 7 13 chr5 94289900 94290002 -58247257 - Lx5 LINE L1 -121 6929 6774 3 1304 1347 331 46 45 chr5 94290004 94290672 -58246587 + RodERV21-int LTR ERV1 4120 4788 -203 3 1304 736 191 26 7 chr5 94290814 94290967 -58246292 - L1_Mur2 LINE L1 -694 5183 5028 3 1304 2296 208 129 6 chr5 94290970 94291141 -58246118 + Lx5 LINE L1 6443 6627 -423 3 1304 373 19 37 0 chr5 94291141 94291195 -58246064 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1304 2296 208 129 6 chr5 94291195 94291556 -58245703 + Lx5 LINE L1 6628 7040 -10 3 1304 330 307 7 21 chr5 94291599 94291739 -58245520 + Lx6 LINE L1 7211 7348 -112 3 1304 716 176 7 7 chr5 94291739 94291876 -58245383 + MTC-int LTR MaLR 909 1045 -213 3 1304 378 164 82 0 chr5 94292592 94292665 -58244594 - MTC LTR MaLR 0 421 343 3 1304 252 0 0 0 chr5 94292755 94292783 -58244476 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1304 868 256 46 95 chr5 94292797 94293164 -58244095 + RMER5 LTR ERV1 186 534 0 3 1304 485 339 0 6 chr5 94293486 94293658 -58243601 - B3A SINE B2 -26 172 2 3 1304 30 27 0 0 chr5 94293658 94293695 -58243564 + AT_rich Low_complexity Low_complexity 1 37 0 3 1304 234 164 0 0 chr5 94293793 94293848 -58243411 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1304 207 204 0 20 chr5 94293947 94293997 -58243262 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 3 1304 2833 189 12 41 chr5 94293999 94294566 -58242693 + RLTR31_Mur LTR ERVK 1 551 -2 3 1304 1863 215 34 38 chr5 94294567 94295433 -58241826 + RMER3D-int LTR ERVK 1 1382 -1460 3 1304 5137 207 83 53 chr5 94295491 94296966 -58240293 + RMER3D-int LTR ERVK 388 2841 -1 3 1304 605 162 7 117 chr5 94296967 94297121 -58240138 + RLTR31_Mur LTR ERVK 1 137 -416 3 1304 575 244 60 161 chr5 94297130 94297496 -58239763 + L1VL1 LINE L1 29 357 -6065 3 1304 390 301 19 6 chr5 94297577 94297734 -58239525 + L1Md_F LINE L1 578 736 -5783 3 1304 1421 220 19 0 chr5 94297713 94298031 -58239228 + L1Md_F LINE L1 628 951 -5568 3 1304 1960 205 150 18 chr5 94298027 94298528 -58238731 - L1VL2 LINE L1 -5674 661 95 3 1304 918 241 113 51 chr5 94298633 94298823 -58238436 - MTEb LTR MaLR -21 358 168 3 1304 2969 86 43 0 chr5 94298823 94299217 -58238042 - RLTR10A LTR ERVK 0 411 1 3 1304 918 241 113 51 chr5 94299217 94299362 -58237897 - MTEb LTR MaLR -212 167 2 3 1304 3629 43 30 11 chr5 94299370 94299719 -58237540 + MT2C_Mm LTR ERVL 1 363 -112 3 1304 4565 19 0 0 chr5 94299719 94300201 -58237058 - LTRIS_Mm LTR ERV1 0 482 1 3 1304 3629 43 30 11 chr5 94300201 94300317 -58236942 + MT2C_Mm LTR ERVL 364 475 0 3 1304 399 265 71 29 chr5 94300683 94300823 -58236436 + B1_Mm SINE Alu 2 147 0 3 1304 711 306 82 44 chr5 94300857 94301199 -58236060 + MTEa LTR MaLR 5 359 -20 3 1304 959 243 35 16 chr5 94301702 94301737 -58235522 + L1_Rod LINE L1 5586 5618 -229 3 1304 3416 75 0 2 chr5 94301737 94302154 -58235105 - L1_Mus1 LINE L1 0 6567 6152 3 1304 3615 64 7 0 chr5 94302154 94302608 -58234651 + L1Md_F2 LINE L1 5655 6111 -471 3 1304 581 251 54 11 chr5 94302628 94302813 -58234446 + RMER5 LTR ERV1 331 523 -11 3 1304 183 130 36 18 chr5 94302813 94302868 -58234391 + T-rich Low_complexity Low_complexity 1 56 0 3 1304 415 310 33 41 chr5 94303017 94303259 -58234000 - Lx9 LINE L1 -127 7517 7278 3 1304 2982 68 52 0 chr5 94303544 94303913 -58233346 + RLTR10 LTR ERVK 1 388 -2 3 1304 530 292 29 0 chr5 94303976 94304113 -58233146 - B1F SINE Alu -7 142 2 3 1304 410 294 116 25 chr5 94304203 94304402 -58232857 - ID_B1 SINE B4 -3 221 5 3 1304 216 0 0 0 chr5 94304620 94304644 -58232615 + (GGGAGA)n Simple_repeat Simple_repeat 6 29 0 3 1304 1022 137 74 6 chr5 94304644 94304814 -58232445 + MTC LTR MaLR 6 188 -233 3 1304 2726 226 91 75 chr5 94304847 94305792 -58231467 + MT-int LTR MaLR 4 963 -135 3 1304 597 296 45 40 chr5 94305801 94306023 -58231236 - Lx6 LINE L1 -26 7434 7212 3 1304 11453 196 59 75 chr5 94306045 94310150 -58227109 - Lx5 LINE L1 -2 7048 2977 3 1304 2569 18 2 253 chr5 94310150 94310574 -58226685 - RLTR10 LTR ERVK 0 390 97 4 1304 4202 5 0 0 chr5 94310574 94311012 -58226247 - L1Md_A LINE L1 0 6582 6145 4 1304 2569 18 2 253 chr5 94311012 94311108 -58226151 - RLTR10 LTR ERVK -294 96 1 4 1304 351 193 0 67 chr5 94311108 94311197 -58226062 - Lx5 LINE L1 -2897 2983 2901 3 1304 1996 190 43 109 chr5 94311169 94311896 -58225363 - L1Md_A LINE L1 -5525 1199 521 4 1304 219 36 0 0 chr5 94311896 94311924 -58225335 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1304 7186 39 2 0 chr5 94312393 94313197 -58224062 - L1Md_T LINE L1 0 6582 5777 4 1304 276 252 20 10 chr5 94313198 94313298 -58223961 - L1VL1 LINE L1 -6321 101 1 4 1304 817 201 28 7 chr5 94313304 94313449 -58223810 - B1_Mur3 SINE Alu -1 148 1 4 1304 490 270 29 7 chr5 94313457 94313595 -58223664 + Lx7 LINE L1 7548 7688 -8 4 1304 482 255 14 32 chr5 94313618 94313812 -58223447 + B3 SINE B2 1 186 -9 4 1304 603 251 200 6 chr5 94313847 94314027 -58223232 - B3 SINE B2 -1 215 1 4 1304 2652 139 8 171 chr5 94314364 94314990 -58222269 + RMER2 LTR ERV1 44 567 0 4 1304 2073 142 66 0 chr5 94315725 94316119 -58221140 - MusHAL1 LINE L1 -636 2076 1657 4 1304 693 215 35 61 chr5 94316141 94316339 -58220920 - RMER13A LTR ERVK -570 290 98 4 1304 356 179 0 15 chr5 94316964 94317032 -58220227 - RMER17A-int LTR ERVK -518 1210 1144 4 1304 246 185 19 0 chr5 94317126 94317180 -58220079 + T-rich Low_complexity Low_complexity 2 56 0 4 1304 39724 35 3 6 chr5 94317196 94323417 -58213842 - L1Md_T LINE L1 -1 6581 383 4 1304 315 0 0 0 chr5 94323523 94323558 -58213701 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1304 314 283 30 38 chr5 94324157 94324289 -58212970 + MuRRS4-int LTR ERV1 1302 1432 -3631 4 1304 444 322 65 14 chr5 94324999 94325329 -58211930 + MURVY-int LTR ERV1 4019 4360 -3241 4 1304 1241 298 34 5 chr5 94325606 94326042 -58211217 + MuRRS4-int LTR ERV1 3556 3954 -1109 4 1304 3391 143 16 18 chr5 94326474 94327037 -58210222 + RMER2 LTR ERV1 1 562 -5 4 1304 2797 148 80 12 chr5 94327144 94327645 -58209614 - RLTR33 LTR ERVK -143 535 1 4 1304 283 248 129 26 chr5 94327847 94327963 -58209296 - RSINE1 SINE B4 -34 131 4 4 1304 701 186 32 58 chr5 94328023 94328177 -58209082 - B1_Mur4 SINE Alu 0 150 1 4 1304 264 323 65 36 chr5 94328211 94328349 -58208910 - B1_Mur3 SINE Alu -7 142 1 4 1304 334 377 0 0 chr5 94328358 94328488 -58208771 - B1_Mur1 SINE Alu -8 141 12 4 1304 492 275 84 28 chr5 94328520 94328662 -58208597 - B3 SINE B2 -7 209 60 4 1304 250 346 76 30 chr5 94328823 94328954 -58208305 - B1F SINE Alu 0 149 13 4 1304 510 295 97 17 chr5 94328857 94329033 -58208226 - ID_B1 SINE B4 -30 194 5 4 1304 235 295 15 145 chr5 94329287 94329418 -58207841 + PB1D7 SINE Alu 3 116 -4 4 1304 256 225 38 29 chr5 94330324 94330429 -58206830 + T-rich Low_complexity Low_complexity 4 109 0 4 1304 266 227 0 35 chr5 94330451 94330536 -58206723 - Lx3B LINE L1 0 6973 6888 4 1304 774 105 10 47 chr5 94330574 94330763 -58206496 - Lx LINE L1 -15 6639 6401 4 1304 2957 183 70 7 chr5 94330762 94331346 -58205913 - Lx2B LINE L1 -41 6959 6339 4 1304 6973 102 9 2 chr5 94331394 94332589 -58204670 - L1_Mus1 LINE L1 0 6567 5363 4 1304 1141 91 0 14 chr5 94332589 94332734 -58204525 - B1_Mus1 SINE Alu -5 143 1 4 1304 542 215 12 0 chr5 94332736 94332862 -58204397 - Lx2B LINE L1 -644 6353 6223 4 1304 1937 174 41 41 chr5 94332880 94333342 -58203917 - RMER17D2 LTR ERVK -15 794 333 4 1304 12812 130 8 5 chr5 94333343 94335984 -58201275 - L1Md_A LINE L1 -2812 3071 466 4 1304 6657 72 1 6 chr5 94338023 94338881 -58198378 + L1Md_F2 LINE L1 4732 5585 -298 4 1304 8192 59 11 2 chr5 94338882 94339857 -58197402 + L1Md_F2 LINE L1 5587 6570 -12 4 1304 493 268 69 29 chr5 94340752 94340925 -58196334 + B3A SINE B2 6 185 -13 4 1304 595 261 0 23 chr5 94341240 94341373 -58195886 - B2_Mm2 SINE B2 -64 131 2 4 1304 225 0 0 0 chr5 94341516 94341541 -58195718 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1304 3926 241 11 24 chr5 94342330 94343248 -58194011 - Lx5 LINE L1 -1 7049 6144 4 1304 3996 101 2 2 chr5 94343269 94343824 -58193435 - L1_Mur1 LINE L1 -845 5041 4487 4 1304 1434 138 5 0 chr5 94343820 94344037 -58193222 - L1_Mus4 LINE L1 -232 6404 6187 4 1304 728 254 124 76 chr5 94344036 94344326 -58192933 - L1_Mur1 LINE L1 -6668 314 11 4 1304 5483 54 9 1 chr5 94344352 94345001 -58192258 - L1Md_F3 LINE L1 0 6584 5931 4 1304 6254 75 28 4 chr5 94345000 94345788 -58191471 - L1_Mus1 LINE L1 -1 6566 5760 4 1304 7642 192 50 10 chr5 94345790 94346682 -58190577 - L1_Mur2 LINE L1 -2894 2983 2049 4 1304 516 32 0 0 chr5 94346682 94346744 -58190515 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1304 7642 188 83 11 chr5 94346744 94347771 -58189488 - L1_Mur2 LINE L1 -3829 2048 901 4 1304 463 222 65 75 chr5 94348017 94348217 -58189042 + MTC-int LTR MaLR 1055 1252 -6 4 1304 1541 233 92 5 chr5 94348222 94348602 -58188657 + MTC LTR MaLR 1 413 -8 4 1304 212 154 19 0 chr5 94348605 94348657 -58188602 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1304 387 356 68 0 chr5 94348666 94348784 -58188475 - B1_Mur1 SINE Alu -21 128 3 4 1304 620 207 35 11 chr5 94350066 94350208 -58187051 - RLTR21 LTR ERVK -136 1436 1281 4 1304 468 0 0 0 chr5 94350248 94350300 -58186959 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1304 252 0 0 0 chr5 94350348 94350376 -58186883 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1304 1010 223 82 43 chr5 94350383 94350711 -58186548 - RLTR21 LTR ERVK -426 1146 806 4 1304 28 29 0 0 chr5 94350751 94350786 -58186473 + AT_rich Low_complexity Low_complexity 1 35 0 4 1304 917 186 20 11 chr5 94351050 94351292 -58185967 - L1_Mur2 LINE L1 -2510 3367 3125 4 1304 621 178 0 23 chr5 94351292 94351424 -58185835 - Lx LINE L1 -2 6652 6524 4 1304 1251 62 7 0 chr5 94351680 94351825 -58185434 - B1_Mm SINE Alu 0 147 2 4 1304 229 351 0 13 chr5 94352506 94352581 -58184678 + ID4_ SINE ID 8 81 -2 4 1304 324 331 99 20 chr5 94353240 94353391 -58183868 - B3A SINE B2 -11 187 25 4 1304 189 74 0 0 chr5 94355129 94355156 -58182103 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1304 1023 121 7 0 chr5 94355162 94355303 -58181956 - B1_Mus1 SINE Alu -5 143 2 4 1304 1471 78 5 10 chr5 94357185 94357378 -58179881 + B2_Mm1t SINE B2 1 192 -1 4 1304 272 330 0 74 chr5 94358401 94358509 -58178750 - PB1D7 SINE Alu -20 100 1 4 1304 350 340 94 25 chr5 94358760 94358962 -58178297 + ID_B1 SINE B4 1 216 -8 4 1304 499 311 83 0 chr5 94359081 94359274 -58177985 + B3 SINE B2 2 210 -6 4 1304 593 228 20 20 chr5 94359445 94359593 -58177666 + B1_Mus1 SINE Alu 1 148 0 4 1304 358 292 19 83 chr5 94359619 94359776 -58177483 + B1_Mur4 SINE Alu 3 149 -1 4 1304 285 184 0 0 chr5 94359856 94359905 -58177354 + RSINE1 SINE B4 3 51 -114 4 1304 975 97 12 49 chr5 94360472 94360635 -58176624 - L1_Mus3 LINE L1 -7 6631 6475 4 1304 1353 152 4 51 chr5 94360635 94360891 -58176368 + L1_Mus4 LINE L1 5891 6134 -502 4 1304 268 333 11 0 chr5 94362391 94362478 -58174781 - B3 SINE B2 -128 88 1 4 1304 643 237 0 0 chr5 94362509 94362640 -58174619 - Lx7 LINE L1 -16 7680 7550 4 1304 297 268 153 8 chr5 94362651 94362775 -58174484 + B1F2 SINE Alu 7 148 -1 4 1304 235 326 54 14 chr5 94362918 94363139 -58174120 - Lx7 LINE L1 -222 7474 7245 4 1304 1111 116 0 0 chr5 94363163 94363309 -58173950 + B1_Mus1 SINE Alu 3 148 0 4 1304 378 0 0 0 chr5 94363309 94363351 -58173908 + (A)n Simple_repeat Simple_repeat 1 42 0 4 1304 609 245 105 37 chr5 94363351 94363542 -58173717 - Lx7 LINE L1 -460 7236 7033 4 1304 1010 221 9 5 chr5 94363565 94363779 -58173480 - L1_Mur2 LINE L1 -207 5670 5456 4 1304 297 0 0 0 chr5 94364631 94364664 -58172595 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1304 3528 209 65 1 chr5 94364732 94365475 -58171784 - Lx2B LINE L1 -1 6999 6210 4 1304 367 279 29 99 chr5 94368947 94369118 -58168141 + RMER10B LTR ERVL 228 386 -12 4 1304 475 316 41 6 chr5 94369093 94369262 -58167997 + B3A SINE B2 6 180 -18 4 1304 390 329 10 0 chr5 94369575 94369701 -58167558 - B2_Mm2 SINE B2 -67 149 13 4 1304 28 29 0 0 chr5 94370210 94370245 -58167014 + AT_rich Low_complexity Low_complexity 1 35 0 4 1304 6226 235 20 24 chr5 94370653 94371103 -58166156 - Lx5 LINE L1 0 7050 6622 4 1304 1363 242 150 52 chr5 94371103 94371509 -58165750 - RLTR41 LTR ERV1 0 446 1 4 20 6226 234 24 22 chr5 94371509 94373078 -58164181 - Lx5 LINE L1 -429 6621 5027 4 1305 1746 266 107 17 chr5 94373080 94373622 -58163637 + Lx5 LINE L1 6443 7033 -17 4 1305 332 157 0 0 chr5 94373640 94373691 -58163568 - Lx4B LINE L1 -541 6517 6467 4 1305 2961 78 0 0 chr5 94373695 94374077 -58163182 + L1_Mm LINE L1 4757 5138 -745 4 1305 7939 49 7 24 chr5 94374111 94375261 -58161998 - L1Md_F2 LINE L1 0 6582 5453 4 1305 4919 77 3 8 chr5 94375258 94375917 -58161342 + L1Md_F2 LINE L1 4800 5455 -428 4 1305 600 199 35 7 chr5 94375909 94376051 -58161208 - L1_Mur2 LINE L1 -684 5193 5048 4 1305 418 237 10 0 chr5 94376123 94376220 -58161039 + MTC-int LTR MaLR 909 1006 -252 4 1305 216 97 0 0 chr5 94376318 94376349 -58160910 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 4 1305 5071 120 10 0 chr5 94376358 94377067 -58160192 - L1_Mus3 LINE L1 -9 6629 5914 4 1305 225 240 29 9 chr5 94377183 94377288 -58159971 + (TA)n Simple_repeat Simple_repeat 2 108 0 4 1305 407 151 114 0 chr5 94377606 94377698 -58159561 - MTC LTR MaLR 0 421 268 4 1305 366 234 52 0 chr5 94377724 94377801 -58159458 - Lx5 LINE L1 -170 6880 6800 4 1305 1995 177 70 13 chr5 94377828 94378211 -58159048 + RLTR9E LTR ERVK 5 409 0 4 1305 566 147 29 29 chr5 94378215 94378320 -58158939 - MTC LTR MaLR -107 314 210 4 1305 1617 229 24 13 chr5 94378295 94378672 -58158587 - MTC-int LTR MaLR -451 807 427 4 1305 1334 253 59 35 chr5 94378785 94379190 -58158069 + MTD LTR MaLR 5 419 0 4 1305 318 200 86 0 chr5 94379207 94379277 -58157982 - B3 SINE B2 -135 81 6 5 1305 388 283 42 28 chr5 94379290 94379432 -58157827 - MTC LTR MaLR -228 146 3 4 1305 756 52 0 0 chr5 94380228 94380324 -58156935 + B1_Mm SINE Alu 52 147 0 5 1305 512 294 63 31 chr5 94380327 94380754 -58156505 + L1MA4 LINE L1 5476 5927 -373 5 1305 338 160 80 0 chr5 94381123 94381198 -58156061 - Lx9 LINE L1 -1 7643 7563 5 1305 390 21 0 0 chr5 94381204 94381251 -58156008 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1305 371 291 30 32 chr5 94381401 94381633 -58155626 + L1VL1 LINE L1 255 485 -5933 5 1305 401 276 16 8 chr5 94381656 94381784 -58155475 + L1_Mus1 LINE L1 675 803 -5813 5 1305 30107 125 14 14 chr5 94381790 94387647 -58149612 + L1_Mus1 LINE L1 723 6566 -1 5 1305 645 234 145 15 chr5 94388137 94388337 -58148922 - URR1A DNA MER1_type 0 226 1 5 1305 1046 145 6 0 chr5 94388410 94388569 -58148690 + B2_Mm1a SINE B2 1 160 -33 5 1305 180 0 0 0 chr5 94388569 94388589 -58148670 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5 1305 5844 117 28 2 chr5 94388600 94389554 -58147705 + L1_Mm LINE L1 4272 5250 -633 5 1305 1183 288 36 93 chr5 94390175 94390734 -58146525 + RMER5 LTR ERV1 3 529 -5 5 1305 263 246 0 14 chr5 94390923 94390997 -58146262 - Lx9 LINE L1 -173 7471 7399 5 1305 513 277 29 0 chr5 94391474 94391611 -58145648 - B1F SINE Alu -7 142 2 5 1305 280 314 19 29 chr5 94391712 94391817 -58145442 - ID_B1 SINE B4 -11 213 110 5 1305 549 0 0 0 chr5 94392083 94392144 -58145115 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1305 1165 144 6 0 chr5 94392148 94392329 -58144930 + MTC LTR MaLR 11 192 -229 5 1305 2630 230 90 75 chr5 94392359 94393104 -58144155 + MT-int LTR MaLR 4 801 -297 5 1305 4386 8 0 0 chr5 94393104 94393586 -58143673 + LTRIS_Mm LTR ERV1 1 482 0 5 1305 2630 230 90 75 chr5 94393586 94393795 -58143464 + MT-int LTR MaLR 802 972 -126 5 1305 265 294 31 61 chr5 94393804 94393967 -58143292 - Lx7 LINE L1 -23 7673 7516 5 1305 11047 222 77 51 chr5 94394034 94395887 -58141372 - Lx5 LINE L1 0 7050 5096 5 1305 800 94 12 0 chr5 94395887 94396020 -58141239 - B1_Mm SINE Alu 0 149 10 5 1305 11047 222 77 51 chr5 94396020 94396250 -58141009 - Lx5 LINE L1 0 5095 4852 5 1305 486 0 0 0 chr5 94396250 94396304 -58140955 + (TTTTC)n Simple_repeat Simple_repeat 4 57 0 5 1305 11047 186 58 88 chr5 94396304 94396500 -58140759 - Lx5 LINE L1 -1026 4851 4622 5 1305 2673 83 3 3 chr5 94396500 94396863 -58140396 - L1_Mus1 LINE L1 0 6567 6205 5 1305 11047 201 57 110 chr5 94396863 94398871 -58138388 - Lx5 LINE L1 -1255 4625 2619 5 1305 1337 164 55 73 chr5 94398871 94399199 -58138060 - RLTRETN_Mm LTR ERVK 0 322 1 5 1305 11047 201 57 110 chr5 94399199 94400079 -58137180 - Lx5 LINE L1 -1255 2618 1738 5 1305 2107 166 60 7 chr5 94400141 94400590 -58136669 - L1_Mur2 LINE L1 -906 4971 4499 5 1305 3375 197 46 1 chr5 94401058 94401825 -58135434 - L1_Mur2 LINE L1 -1378 4499 3699 5 1305 235 234 30 30 chr5 94401825 94401891 -58135368 - RLTR9A LTR ERVK -296 72 7 5 1305 366 58 57 23 chr5 94401960 94402048 -58135211 + (TTTTTG)n Simple_repeat Simple_repeat 6 96 0 5 1305 394 286 16 6 chr5 94402434 94402617 -58134642 - RLTR6-int LTR ERV1 -207 7571 7387 5 1305 779 152 7 0 chr5 94402612 94402750 -58134509 - RMER16-int LTR ERVK -1068 4338 4200 5 1305 3637 147 44 40 chr5 94402750 94403496 -58133763 - RMER17D LTR ERVK 0 889 141 5 1305 1483 174 92 0 chr5 94403503 94403796 -58133463 - IAPEY3_LTR LTR ERVK -12 320 1 5 1305 1258 181 61 20 chr5 94403796 94404139 -58133120 - IAPEz-int LTR ERVK 0 6481 6125 5 1305 3647 111 29 25 chr5 94404156 94404422 -58132837 - IAPEY3-int LTR ERVK -342 7338 7071 5 1305 4211 38 0 0 chr5 94404422 94404918 -58132341 + L1Md_T LINE L1 6087 6582 0 5 1305 3647 111 29 25 chr5 94404918 94405245 -58132014 - IAPEY3-int LTR ERVK -610 7070 6743 5 1305 3101 102 4 4 chr5 94405235 94405689 -58131570 - IAPEY3-int LTR ERVK -1367 6214 5761 5 1305 3114 96 0 16 chr5 94405680 94406127 -58131132 - IAPEY3-int LTR ERVK -1939 5642 5203 5 1305 795 76 17 8 chr5 94406404 94406523 -58130736 - IAPEY3-int LTR ERVK -2932 4649 4530 5 1305 428 188 19 34 chr5 94406539 94406662 -58130597 - MMETn-int LTR ERVK -2380 2464 2357 5 1305 1896 140 111 5 chr5 94406671 94407255 -58130004 - ETnERV2-int LTR ERVK -3142 4264 3567 5 1305 577 219 0 0 chr5 94407281 94407400 -58129859 - ETnERV2-int LTR ERVK -4653 2753 2635 5 1305 291 267 0 55 chr5 94407412 94407503 -58129756 - ETnERV2-int LTR ERVK -4867 2539 2454 5 1305 280 310 88 0 chr5 94407516 94407629 -58129630 - RMER16-int LTR ERVK -5077 1060 938 5 1305 1441 198 93 68 chr5 94407634 94408148 -58129111 - RMER16-int LTR ERVK -4760 646 251 5 1305 335 144 0 103 chr5 94408259 94408375 -58128884 - MMERVK10C-int LTR ERVK -6629 952 849 5 1305 5124 67 14 15 chr5 94408356 94409086 -58128173 - IAPLTR4_I LTR ERVK -704 766 38 5 1305 1409 187 73 41 chr5 94409087 94409404 -58127855 - IAPEY3_LTR LTR ERVK -1 366 1 5 1305 411 57 0 0 chr5 94409404 94409457 -58127802 - RMER17D2 LTR ERVK -659 150 98 5 1305 21424 61 3 2 chr5 94409467 94413132 -58124127 - L1Md_F3 LINE L1 -8 6576 2909 5 1305 725 152 0 9 chr5 94413132 94413245 -58124014 - RMER17D2 LTR ERVK -697 112 1 5 1305 706 100 8 62 chr5 94413245 94413373 -58123886 - RMER16-int LTR ERVK -1207 4199 4079 5 1305 3651 124 55 72 chr5 94413373 94414060 -58123199 - RMER16-int LTR ERVK -3017 2389 1677 5 1305 871 96 0 151 chr5 94414060 94414219 -58123040 + B1_Mm SINE Alu 1 135 -12 5 1305 3651 124 55 72 chr5 94414219 94414241 -58123018 - RMER16-int LTR ERVK -3730 1676 1676 5 1305 186 43 0 0 chr5 94414241 94414264 -58122995 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1305 3651 124 55 72 chr5 94414264 94414319 -58122940 - RMER16-int LTR ERVK -3730 1676 1637 5 1305 228 260 125 77 chr5 94414319 94414423 -58122836 + MTA_Mm LTR MaLR 196 304 -92 5 1305 278 291 15 30 chr5 94414442 94414573 -58122686 - ETnERV2-int LTR ERVK -3812 2355 2227 5 1305 552 242 28 131 chr5 94414682 94414934 -58122325 - ETnERV2-int LTR ERVK -4859 2547 2322 5 1305 298 294 6 150 chr5 94414953 94415113 -58122146 - ETnERV2-int LTR ERVK -5075 2331 2195 5 1305 252 208 0 0 chr5 94415085 94415133 -58122126 - ETnERV2-int LTR ERVK -1730 1584 1537 5 1305 467 230 8 16 chr5 94415318 94415446 -58121813 - ETnERV2-int LTR ERVK -3822 1584 1458 5 1305 6936 83 6 1 chr5 94415446 94416737 -58120522 - L1Md_F2 LINE L1 0 6582 5282 5 1305 180 0 0 0 chr5 94416811 94416831 -58120428 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 5 1305 240 162 0 0 chr5 94417133 94417170 -58120089 - RMER10A LTR ERVL -394 48 12 5 1305 952 238 94 7 chr5 94418253 94418562 -58118697 - L1_Mur2 LINE L1 -893 4984 4649 5 1305 1734 197 34 0 chr5 94418557 94418913 -58118346 - Lx2B LINE L1 -393 6607 6240 5 1305 253 317 53 80 chr5 94419004 94419117 -58118142 - PB1D7 SINE Alu -8 112 3 5 1305 1525 217 33 83 chr5 94419245 94419474 -58117785 + RMER16 LTR ERVK 1 320 -213 5 1305 2146 162 30 0 chr5 94419474 94419870 -58117389 - Lx LINE L1 -7 6647 6240 5 1305 1525 222 62 33 chr5 94419870 94420084 -58117175 + RMER16 LTR ERVK 321 533 0 5 1305 1093 237 86 24 chr5 94420435 94420772 -58116487 + Lx7 LINE L1 7010 7367 -329 5 1305 1822 232 26 7 chr5 94420785 94421202 -58116057 - Lx4A LINE L1 0 7058 6634 5 1305 348 255 0 54 chr5 94421197 94421346 -58115913 + Lx7 LINE L1 7371 7511 -185 5 1305 613 286 7 7 chr5 94421584 94421732 -58115527 - B1_Mus1 SINE Alu 0 148 1 5 1305 268 315 60 23 chr5 94421776 94421909 -58115350 - B1_Mur4 SINE Alu -12 138 1 5 1305 459 341 0 0 chr5 94421918 94422050 -58115209 - B1_Mur1 SINE Alu -8 141 10 5 1305 600 288 7 0 chr5 94422079 94422232 -58115027 - B3 SINE B2 -3 213 60 5 1305 232 247 64 118 chr5 94422850 94422960 -58114299 + PB1D7 SINE Alu 3 106 -14 5 1305 321 202 0 48 chr5 94423794 94423898 -58113361 + T-rich Low_complexity Low_complexity 2 100 0 5 1305 333 252 0 0 chr5 94424027 94424134 -58113125 + T-rich Low_complexity Low_complexity 1 107 0 5 1305 237 235 0 36 chr5 94424160 94424244 -58113015 - Lx3B LINE L1 -5 6968 6888 5 1305 1110 89 7 0 chr5 94424267 94424413 -58112846 - B1_Mus1 SINE Alu 0 148 2 5 1305 3575 205 43 3 chr5 94424423 94425187 -58112072 - Lx2B LINE L1 -3 6997 6203 5 1305 31 26 0 0 chr5 94425998 94426036 -58111223 + AT_rich Low_complexity Low_complexity 1 38 0 5 1305 313 301 23 47 chr5 94429442 94429571 -58107688 + RMER10B LTR ERVL 216 341 -57 5 1305 623 269 0 47 chr5 94429997 94430188 -58107071 - B2_Mm2 SINE B2 -12 183 2 5 1305 34156 81 8 25 chr5 94430281 94436751 -58100508 - L1Md_F2 LINE L1 -5 6577 290 5 1305 341 22 0 21 chr5 94436754 94436801 -58100458 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 5 1305 727 212 22 7 chr5 94436801 94436939 -58100320 - B1_Mur3 SINE Alu -9 140 1 5 1305 454 263 29 7 chr5 94436947 94437085 -58100174 + Lx7 LINE L1 7548 7688 -8 5 1305 474 262 14 32 chr5 94437108 94437302 -58099957 + B3 SINE B2 1 186 -9 5 1305 585 251 206 0 chr5 94437342 94437517 -58099742 - B3 SINE B2 -5 211 1 5 1305 2698 141 9 168 chr5 94437841 94438479 -58098780 + RMER2 LTR ERV1 31 567 0 5 1305 2057 132 0 3 chr5 94439209 94439560 -58097699 - MusHAL1 LINE L1 -636 2076 1727 5 1305 279 0 0 0 chr5 94439654 94439685 -58097574 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5 1305 302 264 31 31 chr5 94440282 94440411 -58096848 + MuRRS4-int LTR ERV1 1302 1430 -3633 5 1305 369 326 61 11 chr5 94441123 94441453 -58095806 + MURVY-int LTR ERV1 4019 4360 -3241 5 1305 1067 301 68 5 chr5 94441730 94442164 -58095095 + MuRRS4-int LTR ERV1 3556 3954 -1109 5 1305 3421 136 18 18 chr5 94442595 94443157 -58094102 + RMER2 LTR ERV1 1 562 -5 5 1305 2855 145 78 14 chr5 94443264 94443767 -58093492 - RLTR33 LTR ERVK -143 535 1 5 1305 252 257 125 27 chr5 94443969 94444081 -58093178 - RSINE1 SINE B4 -34 131 9 5 1305 628 193 32 58 chr5 94444143 94444297 -58092962 - B1_Mur4 SINE Alu 0 150 1 5 1305 262 351 58 22 chr5 94444331 94444468 -58092791 - B1_Mur3 SINE Alu -7 142 1 5 1305 295 377 0 0 chr5 94444477 94444607 -58092652 - B1_Mur1 SINE Alu -8 141 12 5 1305 441 275 84 28 chr5 94444640 94444782 -58092477 - B3 SINE B2 -7 209 60 5 1305 441 304 83 34 chr5 94444949 94445153 -58092106 - ID_B1 SINE B4 -6 218 5 5 1305 245 232 29 39 chr5 94446436 94446539 -58090720 + T-rich Low_complexity Low_complexity 4 105 0 5 1305 277 267 0 0 chr5 94446561 94446647 -58090612 - Lx3B LINE L1 0 6973 6888 5 1305 732 115 10 47 chr5 94446685 94446874 -58090385 - Lx LINE L1 -15 6639 6401 5 1305 2966 185 72 5 chr5 94446873 94447455 -58089804 - Lx2B LINE L1 -41 6959 6339 5 1305 6981 99 13 2 chr5 94447501 94448692 -58088567 - L1_Mus1 LINE L1 0 6567 5363 5 1305 1113 84 0 14 chr5 94448692 94448837 -58088422 - B1_Mus1 SINE Alu -5 143 1 5 1305 524 222 14 1 chr5 94448839 94448965 -58088294 - Lx2B LINE L1 -648 6352 6220 5 1305 3638 136 25 48 chr5 94448988 94449744 -58087515 - RMER17A LTR ERVK -12 739 1 5 1305 7429 71 6 0 chr5 94449815 94450770 -58086489 - L1Md_F2 LINE L1 0 6582 5622 5 1305 9614 114 21 26 chr5 94450772 94452280 -58084979 + MMETn-int LTR ERVK 3344 4844 0 5 1305 1883 138 9 51 chr5 94452280 94452616 -58084643 + RLTRETN_Mm LTR ERVK 1 322 0 5 1305 31789 108 5 2 chr5 94452616 94457799 -58079460 - L1Md_F2 LINE L1 -262 5621 466 5 1305 3513 23 2 0 chr5 94459224 94459619 -58077640 - MTA_Mm LTR MaLR 0 396 1 5 1305 9603 23 2 0 chr5 94459619 94460715 -58076544 - MTA_Mm-int LTR MaLR 0 1098 1 5 1305 3513 23 2 0 chr5 94460715 94461110 -58076149 - MTA_Mm LTR MaLR 0 396 1 5 1305 6573 77 1 6 chr5 94461727 94462585 -58074674 + L1Md_F2 LINE L1 4732 5585 -298 6 1305 8007 55 4 2 chr5 94462586 94463568 -58073691 + L1Md_F2 LINE L1 5587 6570 -12 6 1305 473 266 63 29 chr5 94464589 94464763 -58072496 + B3A SINE B2 6 185 -13 6 1305 552 244 0 24 chr5 94465089 94465215 -58072044 - B2_Mm2 SINE B2 -71 124 2 6 1305 189 0 0 0 chr5 94465360 94465381 -58071878 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6 1305 3834 249 11 23 chr5 94466169 94467086 -58070173 - Lx5 LINE L1 -1 7049 6144 6 1305 4047 101 0 0 chr5 94467107 94467662 -58069597 - L1_Mur1 LINE L1 -845 5041 4487 6 1305 1428 134 5 0 chr5 94467658 94467875 -58069384 - L1_Mus4 LINE L1 -232 6404 6187 6 1305 743 244 112 84 chr5 94467874 94468170 -58069089 - L1_Mur1 LINE L1 -6668 314 11 6 1305 4802 40 9 0 chr5 94468177 94468773 -58068486 - L1Md_F3 LINE L1 0 6584 6005 6 1305 240 105 0 0 chr5 94468773 94468789 -58068470 + (T)n Simple_repeat Simple_repeat 1 16 0 6 1305 38723 32 1 1 chr5 94468792 94476499 -58060760 - L1Md_T LINE L1 0 6585 1 6 1305 741 34 0 0 chr5 94476498 94476587 -58060672 - L1Md_F3 LINE L1 -564 6020 5932 6 1305 5963 75 28 4 chr5 94476587 94477375 -58059884 - L1_Mus1 LINE L1 -1 6566 5760 6 1305 198 0 0 0 chr5 94477852 94477874 -58059385 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1305 41933 11 0 2 chr5 94477909 94485316 -58051943 - L1Md_A LINE L1 0 6582 1 6 1305 7402 191 51 13 chr5 94485317 94486202 -58051057 - L1_Mur2 LINE L1 -2904 2973 2048 6 1305 477 34 0 0 chr5 94486202 94486261 -58050998 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1305 7402 192 57 10 chr5 94486261 94487309 -58049950 - L1_Mur2 LINE L1 -3830 2047 901 6 1305 441 219 67 78 chr5 94487562 94487755 -58049504 + MTC-int LTR MaLR 1062 1252 -6 6 1305 1545 229 72 5 chr5 94487760 94488147 -58049112 + MTC LTR MaLR 1 413 -8 6 1305 241 176 20 0 chr5 94488150 94488201 -58049058 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1305 565 217 35 11 chr5 94489611 94489753 -58047506 - RLTR21 LTR ERVK -136 1436 1281 6 1305 351 0 0 0 chr5 94489793 94489832 -58047427 + (TC)n Simple_repeat Simple_repeat 2 40 0 6 1305 786 58 0 0 chr5 94489882 94489986 -58047273 + (CA)n Simple_repeat Simple_repeat 2 105 0 6 1305 969 214 82 42 chr5 94489994 94490325 -58046934 - RLTR21 LTR ERVK -426 1146 803 6 1305 30 27 0 0 chr5 94490363 94490400 -58046859 + AT_rich Low_complexity Low_complexity 1 37 0 6 1305 934 188 24 13 chr5 94490664 94490941 -58046318 - L1_Mur2 LINE L1 -2510 3367 3104 6 1305 3380 43 2 0 chr5 94490942 94491337 -58045922 - MTA_Mm LTR MaLR 0 396 1 6 1305 9690 17 3 0 chr5 94491337 94492432 -58044827 - MTA_Mm-int LTR MaLR 0 1098 1 6 1305 904 26 9 0 chr5 94492432 94492548 -58044711 - MTA_Mm LTR MaLR 0 396 280 6 1305 1479 31 5 0 chr5 94492537 94492728 -58044531 + MTA_Mm LTR MaLR 205 396 0 6 1305 411 184 0 48 chr5 94492728 94492831 -58044428 - Lx LINE L1 -33 6621 6524 6 1305 246 32 0 0 chr5 94493063 94493094 -58044165 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1305 1137 90 7 0 chr5 94493103 94493248 -58044011 - B1_Mm SINE Alu 0 147 2 6 1305 257 331 97 19 chr5 94494663 94494817 -58042442 - B3A SINE B2 -11 187 22 6 1305 1011 106 7 0 chr5 94496585 94496726 -58040533 - B1_Mus1 SINE Alu -5 143 2 6 1305 1405 68 5 10 chr5 94498610 94498803 -58038456 + B2_Mm1t SINE B2 1 192 -1 6 1305 674 12 12 0 chr5 94499105 94499188 -58038071 + (CA)n Simple_repeat Simple_repeat 1 84 0 6 1305 243 316 0 75 chr5 94499893 94499999 -58037260 - PB1D7 SINE Alu -20 100 3 6 1305 333 341 100 26 chr5 94500252 94500442 -58036817 + ID_B1 SINE B4 1 204 -20 1 1305 514 309 94 0 chr5 94500530 94500721 -58036538 + B3 SINE B2 2 210 -6 2 1305 242 380 7 14 chr5 94500745 94500889 -58036370 + B1_Mur1 SINE Alu 3 145 -4 3 1305 619 221 20 20 chr5 94500892 94501040 -58036219 + B1_Mus1 SINE Alu 1 148 0 4 1305 366 278 19 83 chr5 94501066 94501223 -58036036 + B1_Mur4 SINE Alu 3 149 -1 5 1305 264 204 0 0 chr5 94501303 94501352 -58035907 + RSINE1 SINE B4 3 51 -114 6 1305 991 90 12 49 chr5 94501918 94502081 -58035178 - L1_Mus3 LINE L1 -7 6631 6475 7 1305 1359 152 4 47 chr5 94502081 94502336 -58034923 + L1_Mus4 LINE L1 5891 6134 -502 8 1306 268 333 11 0 chr5 94503837 94503924 -58033335 - B3 SINE B2 -128 88 1 9 1306 657 229 0 0 chr5 94503955 94504086 -58033173 - Lx7 LINE L1 -16 7680 7550 1 1306 253 298 145 0 chr5 94504097 94504221 -58033038 + B1F2 SINE Alu 7 148 -1 1 1306 633 289 91 85 chr5 94504341 94504619 -58032640 - Lx7 LINE L1 -177 7519 7227 1 1306 1148 103 0 0 chr5 94504619 94504765 -58032494 + B1_Mus1 SINE Alu 3 148 0 1 1306 633 289 91 85 chr5 94504765 94504970 -58032289 - Lx7 LINE L1 -470 7226 7033 1 1306 990 228 9 5 chr5 94504993 94505209 -58032050 - L1_Mur2 LINE L1 -207 5670 5454 1 1306 423 0 0 0 chr5 94506058 94506105 -58031154 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1306 204 125 0 0 chr5 94506150 94506182 -58031077 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1306 3252 206 22 0 chr5 94506182 94506922 -58030337 - Lx2B LINE L1 0 6997 6210 1 1306 351 279 29 99 chr5 94510396 94510567 -58026692 + RMER10B LTR ERVL 228 386 -12 1 1306 448 319 42 6 chr5 94510544 94510711 -58026548 + B3A SINE B2 8 180 -18 1 1306 410 312 22 61 chr5 94510976 94511157 -58026102 - B2_Mm2 SINE B2 -21 174 1 1 1306 21 57 0 0 chr5 94511657 94511692 -58025567 + AT_rich Low_complexity Low_complexity 1 35 0 2 1306 6440 231 15 24 chr5 94512100 94512550 -58024709 - Lx5 LINE L1 0 7050 6622 2 1306 1538 210 150 54 chr5 94512550 94512957 -58024302 - RLTR41 LTR ERV1 0 446 1 2 1306 6440 228 22 25 chr5 94512957 94514140 -58023119 - Lx5 LINE L1 -429 6621 5428 2 1306 723 99 0 32 chr5 94514140 94514265 -58022994 - L1Md_F3 LINE L1 -1 6583 6463 2 1306 3354 224 33 26 chr5 94514265 94514495 -58022764 - Lx5 LINE L1 -450 5427 5190 2 1306 189 0 0 0 chr5 94514495 94514516 -58022743 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1306 3354 224 33 26 chr5 94514516 94514674 -58022585 - Lx5 LINE L1 -688 5189 5029 2 1306 1701 275 105 15 chr5 94514676 94515218 -58022041 + Lx5 LINE L1 6443 7033 -17 2 1306 295 160 20 0 chr5 94515236 94515286 -58021973 - Lx5 LINE L1 -557 6493 6443 2 1306 2919 84 0 0 chr5 94515290 94515672 -58021587 + L1_Mm LINE L1 4757 5138 -745 2 1306 8266 52 0 3 chr5 94515707 94516839 -58020420 - L1Md_F2 LINE L1 -2 6580 5453 2 1306 3800 94 2 9 chr5 94516836 94517361 -58019898 + L1_Mm LINE L1 4800 5320 -563 2 1306 1193 0 0 0 chr5 94567361 94567502 -57969757 + L1_Mm LINE L1 5315 5455 -428 3 1306 577 182 36 0 chr5 94567499 94567636 -57969623 - L1_Mur2 LINE L1 -688 5189 5048 3 1306 401 237 10 0 chr5 94567708 94567805 -57969454 + MTC-int LTR MaLR 909 1006 -252 3 1306 186 167 0 0 chr5 94567903 94567939 -57969320 + T-rich Low_complexity Low_complexity 4 39 0 3 1306 4905 121 15 0 chr5 94567948 94568682 -57968577 - L1_Mus3 LINE L1 -9 6629 5885 3 1306 235 222 19 39 chr5 94568773 94568876 -57968383 + (TA)n Simple_repeat Simple_repeat 1 101 0 3 1306 411 155 114 0 chr5 94569193 94569285 -57967974 - MTC LTR MaLR 0 421 268 3 1306 322 256 39 0 chr5 94569311 94569389 -57967870 - Lx5 LINE L1 -170 6880 6800 3 1306 1875 166 76 18 chr5 94569416 94569797 -57967462 + RLTR9E LTR ERVK 7 409 0 3 1306 538 182 10 0 chr5 94569797 94569891 -57967368 - MTC LTR MaLR -103 318 224 3 1306 1614 198 15 6 chr5 94569881 94570211 -57967048 - MTC-int LTR MaLR -451 807 475 4 1306 654 195 38 19 chr5 94570213 94570370 -57966889 + MTD LTR MaLR 260 419 0 4 1306 327 186 86 0 chr5 94570387 94570457 -57966802 - B3 SINE B2 -135 81 6 4 1306 399 299 9 0 chr5 94570471 94570578 -57966681 - MTC LTR MaLR -228 146 39 3 1306 749 73 0 0 chr5 94571416 94571512 -57965747 + B1_Mm SINE Alu 52 147 0 4 1306 501 301 29 35 chr5 94571515 94571967 -57965292 + L1MA4A LINE L1 5476 5927 -376 4 1306 316 147 80 0 chr5 94572336 94572411 -57964848 - Lx9 LINE L1 -1 7643 7563 4 1306 459 0 0 0 chr5 94572417 94572468 -57964791 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1306 337 266 8 8 chr5 94572620 94572745 -57964514 + L1VL1 LINE L1 276 400 -6022 4 1306 346 286 15 8 chr5 94572871 94573005 -57964254 + L1Md_F LINE L1 675 809 -5807 4 1306 23123 125 13 11 chr5 94573007 94577383 -57959876 + L1Md_F LINE L1 725 5105 -778 4 1306 357 177 0 0 chr5 94577380 94577442 -57959817 - L1_Mm LINE L1 -1248 4635 4574 4 1306 6526 85 1 221 chr5 94577436 94578226 -57959033 + L1_Mus1 LINE L1 4642 5424 -459 5 1306 3041 59 0 0 chr5 94578226 94578613 -57958646 + L1Md_F2 LINE L1 6184 6570 -12 5 1306 6862 85 3 79 chr5 94578613 94580092 -57957167 + L1_Mus1 LINE L1 5425 6565 -2 5 1306 808 200 130 0 chr5 94580620 94580820 -57956439 - URR1A DNA MER1_type 0 226 1 5 1306 4951 99 13 6 chr5 94581118 94581830 -57955429 - L1_Mus3 LINE L1 -6 6632 5916 5 1306 314 73 0 5 chr5 94581830 94581883 -57955376 - PB1D9 SINE Alu -94 55 4 5 1306 4812 107 6 1 chr5 94581883 94582684 -57954575 - L1VL1 LINE L1 -1934 1764 964 5 1306 1336 66 55 0 chr5 94582684 94582866 -57954393 - B2_Mm2 SINE B2 -2 193 2 5 1306 3230 149 163 9 chr5 94582866 94583466 -57953793 - L1VL1 LINE L1 -5459 963 246 5 1306 765 260 99 54 chr5 94583622 94583811 -57953448 - MTEb LTR MaLR -21 358 163 5 1306 2777 100 51 0 chr5 94583811 94584202 -57953057 - RLTR10A LTR ERVK 0 411 1 5 1306 765 260 99 54 chr5 94584202 94584325 -57952934 - MTEb LTR MaLR -217 162 32 5 1306 3933 53 0 0 chr5 94584353 94584828 -57952431 + MT2C_Mm LTR ERVL 1 475 0 5 1306 430 242 60 15 chr5 94585189 94585323 -57951936 + B1_Mur3 SINE Alu 2 141 -8 6 1306 667 351 61 26 chr5 94585364 94585709 -57951550 + MTEa LTR MaLR 3 359 -20 6 1306 7313 65 3 9 chr5 94586245 94587285 -57949974 - L1_Mus1 LINE L1 -2 6565 5540 6 1306 612 330 32 92 chr5 94587425 94587795 -57949464 + RMER5 LTR ERV1 13 360 -174 6 1306 2893 98 22 0 chr5 94587796 94588202 -57949057 - L1_Mus1 LINE L1 0 6567 6153 6 1306 3580 50 0 0 chr5 94588202 94588660 -57948599 + L1Md_F2 LINE L1 5654 6111 -471 6 1306 611 231 41 46 chr5 94588680 94588875 -57948384 + RMER5 LTR ERV1 331 524 -10 6 1306 307 0 0 44 chr5 94588876 94588921 -57948338 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 6 1306 368 293 39 39 chr5 94589138 94589344 -57947915 - Lx9 LINE L1 -161 7483 7278 6 1306 519 270 29 0 chr5 94589680 94589817 -57947442 - B1F SINE Alu -7 142 2 6 1306 340 325 93 10 chr5 94589922 94590115 -57947144 - ID_B1 SINE B4 -11 213 5 6 1306 252 180 0 0 chr5 94590292 94590343 -57946916 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1306 567 0 0 0 chr5 94590343 94590406 -57946853 + (GA)n Simple_repeat Simple_repeat 2 64 0 7 1306 252 180 0 0 chr5 94590406 94590415 -57946844 + (TG)n Simple_repeat Simple_repeat 1 9 0 7 1306 908 153 86 0 chr5 94590415 94590578 -57946681 + MTC LTR MaLR 12 188 -233 7 1306 2601 233 105 59 chr5 94590611 94591529 -57945730 + MT-int LTR MaLR 4 963 -135 7 1306 488 266 93 42 chr5 94591536 94591752 -57945507 - Lx6 LINE L1 -26 7434 7208 7 1306 15855 198 77 13 chr5 94591773 94596462 -57940797 - Lx5 LINE L1 -2 7048 2055 7 1306 234 62 0 0 chr5 94596462 94596494 -57940765 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1306 15855 187 67 15 chr5 94596494 94596789 -57940470 - Lx5 LINE L1 -3823 2054 1723 7 1306 2575 125 52 9 chr5 94596841 94597300 -57939959 - L1_Mur2 LINE L1 -907 4970 4492 7 1306 2437 182 269 27 chr5 94597762 94598263 -57938996 - L1_Mur2 LINE L1 -1378 4499 3810 7 1306 828 118 79 0 chr5 94598263 94598390 -57938869 - B1_Mus2 SINE Alu -10 137 1 7 1306 2437 182 269 27 chr5 94598390 94598658 -57938601 - L1_Mur2 LINE L1 -2068 3809 3544 7 1306 506 257 202 59 chr5 94598658 94598980 -57938279 - RLTR9A LTR ERVK 0 368 1 8 1306 356 138 0 15 chr5 94598982 94599048 -57938211 - L1_Mur2 LINE L1 -2328 3549 3485 7 1306 1196 192 89 0 chr5 94599054 94599278 -57937981 - ORR1A1 LTR MaLR -68 278 35 8 1306 5885 178 51 19 chr5 94599298 94600674 -57936585 - L1_Mur2 LINE L1 -2443 3434 2015 7 1306 561 200 15 23 chr5 94600675 94600808 -57936451 - MYSERV-int LTR ERVK -1429 7530 7399 8 1306 818 181 32 16 chr5 94600851 94601036 -57936223 - B2_Mm2 SINE B2 -6 189 2 8 1306 346 83 0 0 chr5 94601064 94601112 -57936147 - ORR1A4 LTR MaLR -8 321 274 8 1306 381 273 27 40 chr5 94601121 94601270 -57935989 - RLTR12B LTR ERVK -341 187 41 8 1306 1417 247 43 64 chr5 94601292 94601854 -57935405 - MYSERV-int LTR ERVK 0 6550 6001 8 1306 411 21 0 0 chr5 94601857 94601905 -57935354 + (TC)n Simple_repeat Simple_repeat 2 49 0 8 1306 976 144 50 6 chr5 94602017 94602199 -57935060 - B2_Mm2 SINE B2 -5 190 1 8 1306 1110 185 28 8 chr5 94602199 94602450 -57934809 - L1_Mur2 LINE L1 -3864 2013 1758 7 1306 5475 129 50 22 chr5 94602450 94603189 -57934070 + L1VL2 LINE L1 38 784 -5551 8 1306 2956 51 0 0 chr5 94603189 94603561 -57933698 - L1Md_F3 LINE L1 -14 6570 6199 8 1306 5475 92 64 8 chr5 94603561 94603884 -57933375 + L1VL2 LINE L1 785 1127 -2488 8 1306 362 244 67 73 chr5 94603998 94604152 -57933107 - RLTR13D3 LTR ERVK 0 1114 981 9 1306 1478 49 0 21 chr5 94604600 94604789 -57932470 + B2_Mm1t SINE B2 2 186 -7 9 1306 5603 129 44 4 chr5 94605206 94606509 -57930750 - Lx LINE L1 0 6638 5314 9 1306 3626 62 4 6 chr5 94606526 94606998 -57930261 - L1Md_F2 LINE L1 -13 6569 6099 9 1306 6623 72 1 6 chr5 94606998 94608139 -57929120 + L1Md_F2 LINE L1 4951 6086 -498 9 1306 20804 94 25 9 chr5 94608137 94612773 -57924486 - Lx LINE L1 -580 5306 233 9 1306 322 271 39 39 chr5 94614007 94614134 -57923125 + RMER10B LTR ERVL 216 342 -56 9 1306 329 347 23 65 chr5 94614159 94614375 -57922884 + B3 SINE B2 6 212 -4 9 1306 878 190 32 64 chr5 94614660 94614879 -57922380 + RMER3D-int LTR ERVK 1998 2209 -633 9 1306 552 250 36 68 chr5 94614944 94615099 -57922160 - Lx7 LINE L1 0 7696 7543 9 1306 509 237 114 0 chr5 94615099 94615230 -57922029 + B1_Mus2 SINE Alu 1 146 -1 9 1306 552 250 36 68 chr5 94615230 94615293 -57921966 - Lx7 LINE L1 -154 7542 7485 9 1306 318 206 0 88 chr5 94615293 94615312 -57921947 + B4 SINE B4 72 144 -148 9 1306 393 119 0 33 chr5 94615312 94615373 -57921886 + PB1D9 SINE Alu 1 59 -61 1 1306 226 202 57 107 chr5 94615447 94615569 -57921690 + RLTR25B LTR ERVK 397 512 -516 1 1306 764 86 0 9 chr5 94615494 94615600 -57921659 + B1_Mus2 SINE Alu 42 146 -1 1 1306 28 0 0 0 chr5 94615615 94615643 -57921616 + AT_rich Low_complexity Low_complexity 1 28 0 1 1306 907 290 38 63 chr5 94615688 94616086 -57921173 - Lx7 LINE L1 -273 7423 7036 9 1306 7522 219 39 19 chr5 94616110 94618003 -57919256 - L1_Mur2 LINE L1 -208 5669 3740 1 1306 41754 12 0 6 chr5 94618001 94624627 -57912632 - L1Md_A LINE L1 0 6582 1 1 1306 414 264 12 48 chr5 94624637 94624804 -57912455 - L1_Mur2 LINE L1 -2119 3758 3598 1 1306 417 158 0 0 chr5 94624804 94624886 -57912373 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 1 1306 11271 131 13 35 chr5 94625132 94626088 -57911171 - L1_Mus3 LINE L1 -7 6631 5686 1 1306 1277 111 70 5 chr5 94626088 94626288 -57910971 + L1Md_F2 LINE L1 6368 6580 -2 1 1306 11271 162 33 95 chr5 94626288 94626919 -57910340 - L1_Mus3 LINE L1 -198 5685 5105 1 1306 1159 96 0 0 chr5 94626919 94627065 -57910194 - B1_Mus2 SINE Alu 0 147 2 1 1306 11271 162 33 95 chr5 94627065 94627902 -57909357 - L1_Mus3 LINE L1 -779 5104 4266 1 1306 403 167 0 35 chr5 94627902 94627989 -57909270 - B2_Mm2 SINE B2 -17 178 95 1 1306 11271 162 33 95 chr5 94627989 94628729 -57908530 - L1_Mus3 LINE L1 -779 4265 3523 1 1306 1429 116 9 0 chr5 94628724 94628985 -57908274 - L1VL1 LINE L1 -2544 1154 892 1 1306 270 0 0 0 chr5 94628993 94629023 -57908236 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 1 1306 730 123 9 0 chr5 94629023 94629137 -57908122 - B1_Mm SINE Alu 0 147 33 1 1306 1167 78 114 0 chr5 94629157 94629323 -57907936 - B2_Mm1a SINE B2 -7 186 2 1 1306 259 209 90 0 chr5 94629323 94629390 -57907869 - L1VL2 LINE L1 -5524 811 739 1 1306 328 283 29 157 chr5 94629361 94629533 -57907726 + L1VL1 LINE L1 208 357 -6065 1 1306 423 265 59 7 chr5 94629590 94629742 -57907517 + L1_Mus1 LINE L1 644 803 -5813 1 1306 2012 183 26 109 chr5 94629751 94630239 -57907020 + L1_Mus1 LINE L1 726 1207 -5409 1 1306 570 41 0 0 chr5 94630239 94630312 -57906947 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 163 30088 120 10 18 chr5 94630312 94634638 -57902621 + L1_Mus1 LINE L1 1173 5499 -384 1 1307 1065 123 7 0 chr5 94634638 94634784 -57902475 + B1_Mus2 SINE Alu 1 147 0 1 1307 1219 61 0 20 chr5 94634788 94634938 -57902321 + B1_Mm SINE Alu 1 147 0 1 1307 774 67 0 0 chr5 94634945 94635050 -57902209 + (GA)n Simple_repeat Simple_repeat 2 106 0 1 1307 211 28 56 0 chr5 94635050 94635086 -57902173 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1 1307 1024 102 73 0 chr5 94635087 94635224 -57902035 + B1_Mus2 SINE Alu 1 147 0 1 1307 30088 77 10 27 chr5 94635224 94636196 -57901063 + L1_Mus1 LINE L1 5500 6423 -144 1 1307 1171 82 7 0 chr5 94636196 94636342 -57900917 - B1_Mus2 SINE Alu 0 147 1 1 1307 7347 71 10 28 chr5 94636342 94636488 -57900771 + L1_Mus1 LINE L1 6424 6567 0 1 1307 214 288 68 0 chr5 94636687 94636760 -57900499 - PB1D7 SINE Alu -2 118 41 1 1307 221 167 0 0 chr5 94636852 94636888 -57900371 + B3 SINE B2 2 37 -179 1 1307 278 290 0 0 chr5 94636904 94636966 -57900293 - B3 SINE B2 -129 87 26 1 1307 442 225 153 15 chr5 94636982 94637113 -57900146 + B1F2 SINE Alu 1 149 0 1 1307 180 0 0 0 chr5 94637113 94637133 -57900126 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1307 1048 260 25 108 chr5 94637140 94637237 -57900022 - Lx7 LINE L1 -151 7545 7458 1 1307 207 0 0 0 chr5 94637237 94637260 -57899999 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1307 1048 260 25 108 chr5 94637260 94637710 -57899549 - Lx7 LINE L1 -239 7457 7043 1 1307 3876 230 12 34 chr5 94637721 94638391 -57898868 - L1_Mur2 LINE L1 -204 5673 5019 1 1307 2870 131 38 40 chr5 94638391 94638867 -57898392 + MT2C_Mm LTR ERVL 1 475 0 1 1307 3876 230 12 34 chr5 94638867 94639244 -57898015 - L1_Mur2 LINE L1 -859 5018 4649 1 1307 1933 176 16 43 chr5 94639239 94639511 -57897748 - Lx2B LINE L1 -393 6607 6338 1 1307 939 177 0 0 chr5 94639511 94639658 -57897601 + B1_Mus1 SINE Alu 1 147 -1 1 1307 1933 176 16 43 chr5 94639658 94639759 -57897500 - Lx2B LINE L1 -663 6337 6244 1 1307 245 369 8 59 chr5 94639854 94639972 -57897287 - PB1D7 SINE Alu -8 112 1 1 1307 1462 228 76 17 chr5 94640121 94640322 -57896937 + RMER16 LTR ERVK 103 326 -207 1 1307 2192 167 56 2 chr5 94640322 94640718 -57896541 - Lx LINE L1 -7 6647 6231 1 1307 1462 228 76 17 chr5 94640718 94640923 -57896336 + RMER16 LTR ERVK 327 532 -1 1 1307 228 35 0 0 chr5 94641529 94641558 -57895701 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1307 1204 268 114 40 chr5 94641558 94641986 -57895273 + Lx7 LINE L1 6902 7361 -335 1 1307 1929 233 21 12 chr5 94642022 94642443 -57894816 - Lx4A LINE L1 0 7058 6634 1 1307 417 227 12 72 chr5 94642423 94642589 -57894670 + Lx7 LINE L1 7356 7511 -185 1 1307 262 272 93 37 chr5 94642650 94642757 -57894502 - RSINE1 SINE B4 -35 130 18 1 1307 549 238 8 8 chr5 94642830 94642957 -57894302 - B1_Mm SINE Alu 0 147 21 1 1307 484 225 53 60 chr5 94643001 94643152 -57894107 - B1_Mur4 SINE Alu 0 150 1 1 1307 412 368 0 0 chr5 94643161 94643297 -57893962 - B1_Mur1 SINE Alu -8 141 6 1 1307 1021 109 0 35 chr5 94643326 94643468 -57893791 + B1_Mus1 SINE Alu 1 137 -11 1 1307 252 0 0 0 chr5 94643468 94643496 -57893763 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1307 519 331 0 0 chr5 94643500 94643651 -57893608 - B3 SINE B2 -5 211 61 1 1307 250 342 58 75 chr5 94643841 94643961 -57893298 - B1F SINE Alu -28 121 4 1 1307 321 263 9 92 chr5 94644285 94644394 -57892865 + PB1D7 SINE Alu 3 102 -18 1 1307 238 253 0 11 chr5 94645321 94645350 -57891909 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1307 201 39 0 0 chr5 94645350 94645376 -57891883 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1307 238 253 0 11 chr5 94645376 94645434 -57891825 + (TTTG)n Simple_repeat Simple_repeat 3 59 0 1 1307 303 197 61 0 chr5 94645466 94645532 -57891727 - Lx3B LINE L1 -6 6967 6898 1 1307 3350 203 78 4 chr5 94645546 94646279 -57890980 - Lx2B LINE L1 -11 6989 6203 1 1307 3439 91 48 7 chr5 94646288 94646751 -57890508 + RLTR45 LTR ERVK 1 482 0 1 1307 243 203 0 0 chr5 94647577 94647651 -57889608 + (TAA)n Simple_repeat Simple_repeat 1 74 0 1 1307 1142 91 0 0 chr5 94647776 94647919 -57889340 + B1_Mus2 SINE Alu 5 147 0 1 1307 189 0 0 0 chr5 94649166 94649187 -57888072 + (CTTG)n Simple_repeat Simple_repeat 2 22 0 1 1307 617 156 101 0 chr5 94649200 94649309 -57887950 - PB1D9 SINE Alu 0 120 1 1 1307 273 255 20 30 chr5 94651344 94651445 -57885814 + RMER10B LTR ERVL 216 315 -83 1 1307 7232 58 5 0 chr5 94651507 94652435 -57884824 + L1_Mm LINE L1 2424 3356 -2527 1 1307 456 323 30 6 chr5 94652444 94652609 -57884650 + B3A SINE B2 8 176 -22 1 1307 28 0 0 0 chr5 94652646 94652674 -57884585 + AT_rich Low_complexity Low_complexity 1 28 0 1 1307 895 195 48 151 chr5 94652743 94653094 -57884165 - RLTRETN_Mm LTR ERVK 0 322 8 1 1307 632 225 5 80 chr5 94653251 94653439 -57883820 - B2_Mm2 SINE B2 -21 174 1 1 1307 3668 62 23 2 chr5 94653573 94654010 -57883249 - L1_Mus1 LINE L1 0 6567 6122 1 1307 207 286 171 67 chr5 94654150 94654255 -57883004 + L2b LINE L2 3238 3353 -22 1 1307 1255 68 0 0 chr5 94654436 94654584 -57882675 + B1_Mus1 SINE Alu 1 148 0 1 1307 180 77 0 0 chr5 94654584 94654610 -57882649 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1307 225 218 93 65 chr5 94655727 94655835 -57881424 + MURVY-LTR LTR ERV1 351 461 -58 1 1307 467 184 7 13 chr5 94655852 94655954 -57881305 - Lx5 LINE L1 -121 6929 6774 1 1307 1333 331 46 45 chr5 94655956 94656624 -57880635 + RodERV21-int LTR ERV1 4120 4788 -203 1 1307 709 197 26 7 chr5 94656766 94656919 -57880340 - L1_Mur2 LINE L1 -694 5183 5028 1 1307 2325 222 115 2 chr5 94656922 94657093 -57880166 + Lx5 LINE L1 6443 6627 -423 1 1307 469 0 33 0 chr5 94657093 94657154 -57880105 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1307 2325 222 115 2 chr5 94657154 94657520 -57879739 + Lx5 LINE L1 6628 7040 -10 1 1307 330 307 7 21 chr5 94657563 94657703 -57879556 + Lx6 LINE L1 7211 7348 -112 1 1307 736 169 7 7 chr5 94657703 94657840 -57879419 + MTC-int LTR MaLR 909 1045 -213 1 1307 5704 71 0 0 chr5 94658052 94658807 -57878452 - L1Md_T LINE L1 0 6582 5895 1 1307 40008 57 1 23 chr5 94658813 94664922 -57872337 + L1Md_T LINE L1 99 5883 0 1 1307 378 164 82 0 chr5 94665445 94665518 -57871741 - MTC LTR MaLR 0 421 343 1 1307 234 0 0 0 chr5 94665608 94665634 -57871625 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1307 868 256 46 95 chr5 94665648 94666015 -57871244 + RMER5 LTR ERV1 186 534 0 1 1307 485 339 0 6 chr5 94666337 94666509 -57870750 - B3A SINE B2 -26 172 2 1 1307 30 27 0 0 chr5 94666509 94666546 -57870713 + AT_rich Low_complexity Low_complexity 1 37 0 1 1307 270 152 0 0 chr5 94666644 94666703 -57870556 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1307 207 204 0 20 chr5 94666802 94666852 -57870407 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 1 1307 2808 191 12 41 chr5 94666854 94667421 -57869838 + RLTR31_Mur LTR ERVK 1 551 -2 1 1307 1825 215 34 38 chr5 94667422 94668288 -57868971 + RMER3D-int LTR ERVK 1 1382 -1460 1 1307 5138 210 83 52 chr5 94668346 94669821 -57867438 + RMER3D-int LTR ERVK 388 2841 -1 1 1307 615 154 7 117 chr5 94669822 94669976 -57867283 + RLTR31_Mur LTR ERVK 1 137 -416 1 1307 572 241 60 161 chr5 94669985 94670351 -57866908 + L1VL1 LINE L1 29 357 -6065 1 1307 383 308 19 6 chr5 94670432 94670589 -57866670 + L1Md_F LINE L1 578 736 -5783 1 1307 1444 217 19 0 chr5 94670568 94670886 -57866373 + L1Md_F LINE L1 628 951 -5568 1 1307 1926 204 152 18 chr5 94670882 94671382 -57865877 - L1VL2 LINE L1 -5674 661 95 1 1307 872 242 116 54 chr5 94671487 94671677 -57865582 - MTEb LTR MaLR -21 358 168 1 1307 3029 86 43 0 chr5 94671677 94672071 -57865188 - RLTR10A LTR ERVK 0 411 1 1 1307 872 242 116 54 chr5 94672071 94672216 -57865043 - MTEb LTR MaLR -212 167 2 1 1307 3643 41 30 11 chr5 94672224 94672573 -57864686 + MT2C_Mm LTR ERVL 1 363 -112 1 1307 4525 25 0 0 chr5 94672573 94673055 -57864204 - LTRIS_Mm LTR ERV1 0 482 1 1 1307 3643 41 30 11 chr5 94673055 94673171 -57864088 + MT2C_Mm LTR ERVL 364 475 0 1 1307 375 272 71 29 chr5 94673530 94673670 -57863589 + B1_Mm SINE Alu 2 147 0 1 1307 711 309 82 44 chr5 94673704 94674046 -57863213 + MTEa LTR MaLR 5 359 -20 1 1307 975 239 35 16 chr5 94674549 94674584 -57862675 + L1_Rod LINE L1 5586 5618 -229 1 1307 3373 82 0 2 chr5 94674584 94675001 -57862258 - L1_Mus1 LINE L1 0 6567 6152 1 1307 3630 62 7 0 chr5 94675001 94675455 -57861804 + L1Md_F2 LINE L1 5655 6111 -471 2 1307 597 246 54 11 chr5 94675475 94675660 -57861599 + RMER5 LTR ERV1 331 523 -11 2 1307 183 130 36 18 chr5 94675660 94675715 -57861544 + T-rich Low_complexity Low_complexity 1 56 0 2 1307 433 306 33 41 chr5 94675865 94676107 -57861152 - Lx9 LINE L1 -127 7517 7278 2 1307 3037 73 8 35 chr5 94676392 94676791 -57860468 + RLTR10 LTR ERVK 1 388 -2 2 1307 542 285 29 0 chr5 94676854 94676991 -57860268 - B1F SINE Alu -7 142 2 2 1307 416 267 135 45 chr5 94677081 94677281 -57859978 - ID_B1 SINE B4 -2 222 5 2 1307 200 184 0 0 chr5 94677458 94677496 -57859763 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1307 225 0 0 0 chr5 94677500 94677525 -57859734 + (GGGAGA)n Simple_repeat Simple_repeat 5 29 0 2 1307 989 154 74 0 chr5 94677525 94677695 -57859564 + MTC LTR MaLR 1 183 -238 2 1307 2655 226 93 76 chr5 94677728 94678672 -57858587 + MT-int LTR MaLR 4 963 -135 2 1307 572 292 50 45 chr5 94678681 94678903 -57858356 - Lx6 LINE L1 -26 7434 7212 2 1307 11581 221 87 56 chr5 94678925 94681007 -57856252 - Lx5 LINE L1 -2 7048 4865 2 1307 183 42 0 0 chr5 94681007 94681031 -57856228 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1307 1314 35 0 0 chr5 94681031 94681175 -57856084 - B1_Mm SINE Alu -2 145 2 2 1307 11581 186 40 105 chr5 94681175 94684015 -57853244 - Lx5 LINE L1 -1013 4864 521 2 1307 7182 37 2 0 chr5 94684506 94685310 -57851949 - L1Md_T LINE L1 0 6582 5777 2 1307 276 252 20 10 chr5 94685311 94685411 -57851848 - L1VL1 LINE L1 -6321 101 1 2 1307 815 201 28 7 chr5 94685417 94685562 -57851697 - B1_Mur3 SINE Alu -1 148 1 2 1307 509 275 28 7 chr5 94685570 94685713 -57851546 + Lx7 LINE L1 7548 7693 -3 2 1307 482 255 14 32 chr5 94685731 94685925 -57851334 + B3 SINE B2 1 186 -9 2 1307 583 257 200 6 chr5 94685960 94686140 -57851119 - B3 SINE B2 -1 215 1 2 1307 2652 141 8 171 chr5 94686477 94687103 -57850156 + RMER2 LTR ERV1 44 567 0 2 1307 1994 160 22 7 chr5 94687836 94688240 -57849019 - MusHAL1 LINE L1 -636 2076 1667 2 1307 693 215 35 61 chr5 94688289 94688487 -57848772 - RMER13A LTR ERVK -570 290 98 2 1307 356 179 0 15 chr5 94689112 94689180 -57848079 - RMER17A-int LTR ERVK -518 1210 1144 2 1307 180 0 0 0 chr5 94689211 94689231 -57848028 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 1307 246 185 19 0 chr5 94689278 94689332 -57847927 + T-rich Low_complexity Low_complexity 2 56 0 2 1307 39697 33 2 6 chr5 94689344 94695358 -57841901 - L1Md_T LINE L1 0 6582 606 2 1307 351 0 0 0 chr5 94695477 94695516 -57841743 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2 1307 333 276 30 30 chr5 94696117 94696248 -57841011 + MuRRS4-int LTR ERV1 1302 1432 -3631 2 1307 444 322 65 14 chr5 94696958 94697288 -57839971 + MuRRS4-int LTR ERV1 4019 4360 -3241 2 1307 1205 309 55 11 chr5 94697562 94698001 -57839258 + MuRRS4-int LTR ERV1 3556 3954 -1109 2 1307 3398 143 16 18 chr5 94698433 94698996 -57838263 + RMER2 LTR ERV1 1 562 -5 2 1307 2796 149 80 12 chr5 94699103 94699604 -57837655 - RLTR33 LTR ERVK -143 535 1 2 1307 269 225 162 0 chr5 94699841 94699921 -57837338 - RSINE1 SINE B4 -69 96 4 2 1307 701 186 32 58 chr5 94699978 94700132 -57837127 - B1_Mur4 SINE Alu 0 150 1 2 1307 265 318 73 36 chr5 94700166 94700303 -57836956 - B1_Mur3 SINE Alu -7 142 1 2 1307 334 377 0 0 chr5 94700312 94700442 -57836817 - B1_Mur1 SINE Alu -8 141 12 2 1307 502 275 84 28 chr5 94700474 94700616 -57836643 - B3 SINE B2 -7 209 60 2 1307 217 346 76 30 chr5 94700777 94700908 -57836351 - B1F SINE Alu 0 149 13 2 1307 475 301 97 17 chr5 94700811 94700987 -57836272 - ID_B1 SINE B4 -30 194 5 2 1307 235 295 15 145 chr5 94701241 94701372 -57835887 + PB1D7 SINE Alu 3 116 -4 2 1307 272 216 38 29 chr5 94702278 94702383 -57834876 + T-rich Low_complexity Low_complexity 4 109 0 2 1307 254 233 0 40 chr5 94702405 94702481 -57834778 - Lx3B LINE L1 0 6973 6901 2 1307 764 126 43 56 chr5 94702528 94702716 -57834543 - Lx LINE L1 -15 6639 6402 2 1307 2987 181 70 7 chr5 94702717 94703300 -57833959 - Lx2B LINE L1 -42 6958 6339 2 1307 189 0 0 0 chr5 94703302 94703323 -57833936 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1307 6914 105 9 2 chr5 94703346 94704541 -57832718 - L1_Mus1 LINE L1 0 6567 5363 2 1307 1172 84 0 14 chr5 94704541 94704686 -57832573 - B1_Mus1 SINE Alu -5 143 1 2 1307 524 224 12 0 chr5 94704688 94704814 -57832445 - Lx2B LINE L1 -644 6353 6223 2 1307 3885 143 24 36 chr5 94704842 94705587 -57831672 - RMER17A LTR ERVK -15 736 1 2 1307 7429 74 6 0 chr5 94705660 94706615 -57830644 - L1Md_F2 LINE L1 0 6582 5622 2 1307 9620 113 21 26 chr5 94706615 94708126 -57829133 + MMETn-int LTR ERVK 3342 4844 0 2 1307 2021 135 9 51 chr5 94708126 94708462 -57828797 + RLTRETN_Mm LTR ERVK 1 322 0 2 1307 31876 110 4 2 chr5 94708462 94713645 -57823614 - L1Md_F2 LINE L1 -262 5621 486 2 1307 6592 75 1 6 chr5 94715687 94716545 -57820714 + L1Md_F2 LINE L1 4732 5585 -298 2 1307 8135 63 14 0 chr5 94716546 94717526 -57819733 + L1Md_F2 LINE L1 5587 6580 -2 2 1307 504 272 63 29 chr5 94718423 94718597 -57818662 + B3A SINE B2 6 185 -13 2 1307 572 269 0 23 chr5 94718916 94719049 -57818210 - B2_Mm2 SINE B2 -64 131 2 2 1307 189 0 0 0 chr5 94719192 94719213 -57818046 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1307 3936 241 11 22 chr5 94720002 94720917 -57816342 - Lx5 LINE L1 -1 7049 6145 2 1307 3979 101 2 2 chr5 94720939 94721494 -57815765 - L1_Mur1 LINE L1 -845 5041 4487 2 1307 1416 138 5 0 chr5 94721490 94721707 -57815552 - L1_Mus4 LINE L1 -232 6404 6187 2 1307 698 267 107 59 chr5 94721706 94721996 -57815263 - L1_Mur1 LINE L1 -6668 314 11 2 1307 5435 56 12 1 chr5 94722022 94722669 -57814590 - L1Md_F3 LINE L1 0 6584 5931 2 1307 6207 78 28 4 chr5 94722668 94723456 -57813803 - L1_Mus1 LINE L1 -1 6566 5760 2 1307 7561 194 50 11 chr5 94723458 94724351 -57812908 - L1_Mur2 LINE L1 -2894 2983 2049 2 1307 513 115 0 0 chr5 94724351 94724429 -57812830 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1307 7561 190 56 10 chr5 94724429 94725479 -57811780 - L1_Mur2 LINE L1 -3829 2048 901 2 1307 451 211 97 84 chr5 94725697 94725924 -57811335 + MTC-int LTR MaLR 1023 1252 -6 2 1307 1588 228 92 5 chr5 94725929 94726309 -57810950 + MTC LTR MaLR 1 413 -8 2 1307 203 157 0 19 chr5 94726312 94726364 -57810895 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1307 387 356 68 0 chr5 94726373 94726491 -57810768 - B1_Mur1 SINE Alu -21 128 3 2 1307 1235 235 59 79 chr5 94727773 94727955 -57809304 - RLTR21 LTR ERVK -136 1436 1225 2 1307 327 25 0 0 chr5 94727955 94727995 -57809264 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1307 1235 240 148 65 chr5 94727995 94728454 -57808805 - RLTR21 LTR ERVK -266 1306 806 2 1307 28 29 0 0 chr5 94728493 94728528 -57808731 + AT_rich Low_complexity Low_complexity 1 35 0 2 1307 902 183 20 15 chr5 94728792 94729034 -57808225 - L1_Mur1 LINE L1 -2510 3367 3125 2 1307 641 171 0 15 chr5 94729034 94729165 -57808094 - Lx LINE L1 -2 6652 6524 2 1307 1239 69 7 0 chr5 94729421 94729566 -57807693 - B1_Mm SINE Alu 0 147 2 2 1307 221 365 0 13 chr5 94730247 94730322 -57806937 + ID4_ SINE ID 8 81 -2 2 1307 189 74 0 0 chr5 94732870 94732897 -57804362 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1307 1045 113 7 0 chr5 94732903 94733044 -57804215 - B1_Mus1 SINE Alu -5 143 2 2 1307 1481 63 0 0 chr5 94734927 94735101 -57802158 + B2_Mm1t SINE B2 1 174 -19 2 1307 218 170 43 0 chr5 94735109 94735156 -57802103 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 2 1307 272 330 0 74 chr5 94736144 94736252 -57801007 - PB1D7 SINE Alu -20 100 1 2 1307 350 340 94 25 chr5 94736503 94736705 -57800554 + ID_B1 SINE B4 1 216 -8 2 1307 510 301 83 0 chr5 94736824 94737017 -57800242 + B3 SINE B2 2 210 -6 2 1307 619 221 20 20 chr5 94737188 94737336 -57799923 + B1_Mus1 SINE Alu 1 148 0 2 1307 356 288 21 64 chr5 94737365 94737506 -57799753 + B1_Mm SINE Alu 11 145 -2 2 1307 182 128 26 0 chr5 94737507 94737546 -57799713 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2 1307 287 269 122 32 chr5 94737599 94737722 -57799537 + RSINE1 SINE B4 3 136 -29 2 1307 1354 178 23 49 chr5 94738178 94738215 -57799044 + L1_Mus4 LINE L1 5847 5889 -765 2 1307 948 110 12 49 chr5 94738215 94738378 -57798881 - L1_Mus3 LINE L1 -7 6631 6475 2 1307 1354 159 4 49 chr5 94738378 94738634 -57798625 + L1_Mus4 LINE L1 5890 6133 -503 2 1307 259 345 11 0 chr5 94740134 94740221 -57797038 - B3 SINE B2 -128 88 1 2 1307 643 237 0 0 chr5 94740252 94740383 -57796876 - Lx7 LINE L1 -16 7680 7550 2 1307 297 268 153 8 chr5 94740394 94740518 -57796741 + B1F2 SINE Alu 7 148 -1 2 1307 611 267 68 150 chr5 94740528 94740906 -57796353 - Lx7 LINE L1 -126 7570 7227 2 1307 1122 116 0 0 chr5 94740906 94741052 -57796207 + B1_Mus1 SINE Alu 3 148 0 2 1307 611 267 68 150 chr5 94741052 94741259 -57796000 - Lx7 LINE L1 -470 7226 7033 2 1307 1010 223 9 5 chr5 94741282 94741498 -57795761 - L1_Mur2 LINE L1 -207 5670 5454 2 1307 261 0 0 0 chr5 94742348 94742377 -57794882 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1307 3521 209 65 1 chr5 94742446 94743188 -57794071 - Lx2B LINE L1 -2 6998 6210 2 1307 367 279 29 99 chr5 94746661 94746832 -57790427 + RMER10B LTR ERVL 228 386 -12 2 1307 475 316 41 6 chr5 94746807 94746976 -57790283 + B3A SINE B2 6 180 -18 2 1307 390 329 10 0 chr5 94747289 94747415 -57789844 - B2_Mm2 SINE B2 -67 149 13 2 1307 28 29 0 0 chr5 94747924 94747959 -57789300 + AT_rich Low_complexity Low_complexity 1 35 0 2 1307 6221 233 22 24 chr5 94748367 94748816 -57788443 - Lx5 LINE L1 0 7050 6622 2 1307 1388 236 150 52 chr5 94748816 94749222 -57788037 - RLTR41 LTR ERV1 0 446 1 2 1307 6221 231 27 23 chr5 94749222 94750790 -57786469 - Lx5 LINE L1 -429 6621 5027 2 1307 1728 268 107 17 chr5 94750792 94751334 -57785925 + Lx5 LINE L1 6443 7033 -17 2 1307 332 157 0 0 chr5 94751352 94751403 -57785856 - Lx4B LINE L1 -541 6517 6467 3 1307 2978 76 0 0 chr5 94751407 94751789 -57785470 + L1_Mm LINE L1 4757 5138 -745 3 1307 7835 52 9 24 chr5 94751823 94752971 -57784288 - L1Md_F2 LINE L1 0 6582 5453 3 1307 4891 80 3 8 chr5 94752968 94753627 -57783632 + L1Md_F2 LINE L1 4800 5455 -428 3 1307 594 199 37 0 chr5 94753619 94753755 -57783504 - L1_Mur3 LINE L1 -685 5195 5055 3 1307 418 237 10 0 chr5 94753833 94753930 -57783329 + MTC-int LTR MaLR 909 1006 -252 3 1307 216 97 0 0 chr5 94754028 94754059 -57783200 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 3 1307 5058 121 10 0 chr5 94754068 94754777 -57782482 - L1_Mus3 LINE L1 -9 6629 5914 3 1307 225 240 29 9 chr5 94754893 94754998 -57782261 + (TA)n Simple_repeat Simple_repeat 2 108 0 3 1307 407 151 114 0 chr5 94755132 94755224 -57782035 - MTC LTR MaLR 0 421 268 3 1307 361 234 52 0 chr5 94755250 94755327 -57781932 - Lx5 LINE L1 -170 6880 6800 3 1307 1999 183 70 13 chr5 94755354 94755737 -57781522 + RLTR9E LTR ERVK 5 409 0 3 1307 566 147 29 29 chr5 94755741 94755846 -57781413 - MTC LTR MaLR -107 314 210 3 1307 1617 229 24 13 chr5 94755821 94756198 -57781061 - MTC-int LTR MaLR -451 807 427 3 1307 1247 264 59 39 chr5 94756311 94756718 -57780541 + MTD LTR MaLR 5 419 0 3 1307 278 229 86 0 chr5 94756735 94756805 -57780454 - B3 SINE B2 -135 81 6 3 1307 413 275 42 28 chr5 94756818 94756960 -57780299 - MTC LTR MaLR -228 146 3 3 1307 756 52 0 0 chr5 94757756 94757852 -57779407 + B1_Mm SINE Alu 52 147 0 3 1307 523 299 60 30 chr5 94757863 94758362 -57778897 + L1MA4 LINE L1 5476 5967 -1677 3 1307 338 160 80 0 chr5 94758650 94758725 -57778534 - Lx9 LINE L1 -1 7643 7563 3 1307 372 22 0 0 chr5 94758731 94758776 -57778483 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1307 371 286 36 39 chr5 94758926 94759158 -57778101 + L1VL1 LINE L1 255 485 -5933 3 1307 401 276 16 8 chr5 94759181 94759309 -57777950 + L1_Mus1 LINE L1 675 803 -5813 3 163 30202 125 12 15 chr5 94759315 94765196 -57772063 + L1_Mus1 LINE L1 723 6654 0 3 1308 645 234 145 15 chr5 94765677 94765877 -57771382 - URR1A DNA MER1_type 0 226 1 3 1308 1045 145 6 0 chr5 94765950 94766109 -57771150 + B2_Mm1a SINE B2 1 160 -33 3 1308 180 0 0 0 chr5 94766109 94766129 -57771130 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 3 1308 6398 112 28 3 chr5 94766140 94767095 -57770164 + L1_Mm LINE L1 4272 5250 -633 3 1308 1156 286 36 90 chr5 94767716 94768273 -57768986 + RMER5 LTR ERV1 3 529 -5 3 1308 304 274 0 34 chr5 94768420 94768537 -57768722 - Lx9 LINE L1 -133 7511 7399 3 1308 561 277 29 0 chr5 94769014 94769151 -57768108 - B1F SINE Alu -7 142 2 3 1308 270 314 19 29 chr5 94769252 94769357 -57767902 - ID_B1 SINE B4 -11 213 110 3 1308 441 36 0 0 chr5 94769623 94769678 -57767581 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1308 1176 138 6 0 chr5 94769682 94769863 -57767396 + MTC LTR MaLR 11 192 -229 3 1308 2612 230 90 75 chr5 94769893 94770638 -57766621 + MT-int LTR MaLR 4 801 -297 3 1308 4647 8 0 0 chr5 94770638 94771120 -57766139 + LTRIS_Mm LTR ERV1 1 482 0 3 1308 2612 230 90 75 chr5 94771120 94771329 -57765930 + MT-int LTR MaLR 802 972 -126 3 1308 307 265 43 74 chr5 94771338 94771501 -57765758 - Lx7 LINE L1 -23 7673 7516 3 1308 13483 224 71 86 chr5 94771568 94773413 -57763846 - Lx5 LINE L1 0 7050 5124 3 1308 809 58 0 0 chr5 94773413 94773516 -57763743 - B1_Mm SINE Alu 0 147 45 3 1308 261 210 198 58 chr5 94773448 94773534 -57763725 - MT2B LTR ERVL -337 264 167 3 1308 13483 224 71 86 chr5 94773534 94774011 -57763248 - Lx5 LINE L1 0 5123 4624 3 1308 2918 80 0 3 chr5 94774011 94774375 -57762884 - L1_Mus1 LINE L1 0 6567 6205 3 1308 13483 195 50 148 chr5 94774375 94776386 -57760873 - Lx5 LINE L1 -1254 4623 2636 3 1308 1293 174 55 73 chr5 94776386 94776714 -57760545 - RLTRETN_Mm LTR ERVK 0 322 1 3 1308 13483 195 50 148 chr5 94776714 94776937 -57760322 - Lx5 LINE L1 -1254 2635 2414 3 1308 4641 14 2 12 chr5 94776937 94777435 -57759824 - MT2_Mm LTR ERVL 0 493 1 3 1308 13483 195 50 148 chr5 94777435 94778112 -57759147 - Lx5 LINE L1 -3464 2413 1723 3 1308 2329 168 59 7 chr5 94778163 94778619 -57758640 - L1_Mur2 LINE L1 -906 4971 4492 3 1308 3675 201 46 3 chr5 94779079 94779847 -57757412 - L1_Mur2 LINE L1 -1378 4499 3699 3 1308 235 234 30 30 chr5 94779847 94779913 -57757346 - RLTR9A LTR ERVK -296 72 7 3 1308 383 40 25 62 chr5 94779982 94780062 -57757197 + (TTTTTG)n Simple_repeat Simple_repeat 2 78 0 3 1308 464 280 50 41 chr5 94780393 94780635 -57756624 - RLTR6-int LTR ERV1 -148 7630 7387 3 1308 847 152 7 0 chr5 94780630 94780768 -57756491 - RMER16-int LTR ERVK -1068 4338 4200 3 1308 3680 149 44 39 chr5 94780768 94781513 -57755746 - RMER17D LTR ERVK 0 889 141 3 1308 1480 178 92 0 chr5 94781520 94781813 -57755446 - IAPEY3_LTR LTR ERVK -12 320 1 3 1308 1356 182 64 20 chr5 94781813 94782155 -57755104 - IAPEz-int LTR ERVK 0 6481 6125 3 1308 3950 107 29 30 chr5 94782172 94782438 -57754821 - IAPEY3-int LTR ERVK -342 7338 7073 3 1308 4435 40 0 0 chr5 94782438 94782934 -57754325 + L1Md_T LINE L1 6087 6582 0 3 1308 3950 107 29 30 chr5 94782934 94783264 -57753995 - IAPEY3-int LTR ERVK -608 7072 6743 3 1308 3262 106 4 7 chr5 94783254 94783709 -57753550 - IAPEY3-int LTR ERVK -1367 6214 5761 3 1308 3385 92 0 16 chr5 94783697 94784147 -57753112 - IAPEY3-int LTR ERVK -1936 5645 5203 3 1308 875 81 35 49 chr5 94784400 94784543 -57752716 - IAPEY3-int LTR ERVK -2911 4670 4530 3 1308 478 183 22 36 chr5 94784555 94784679 -57752580 - IAPEY3-int LTR ERVK -2380 2464 2357 3 1308 2048 144 108 7 chr5 94784691 94785275 -57751984 - ETnERV2-int LTR ERVK -3142 4264 3567 3 1308 635 242 374 25 chr5 94785301 94785523 -57751736 - ETnERV2-int LTR ERVK -4653 2753 2454 3 1308 327 310 88 0 chr5 94785536 94785649 -57751610 - RMER16-int LTR ERVK -5077 1060 938 3 1308 1781 206 159 54 chr5 94785635 94786169 -57751090 - RMER16-int LTR ERVK -4587 819 251 3 1308 5521 80 19 21 chr5 94786280 94787107 -57750152 - IAPLTR4_I LTR ERVK -6629 952 38 3 1308 1430 184 88 10 chr5 94787108 94787425 -57749834 - IAPEY3_LTR LTR ERVK -1 366 1 3 1308 401 41 0 0 chr5 94787429 94787478 -57749781 - RMER17D2 LTR ERVK -663 146 98 3 1308 23131 60 3 2 chr5 94787488 94791153 -57746106 - L1Md_F3 LINE L1 -8 6576 2909 3 1308 716 161 0 9 chr5 94791153 94791266 -57745993 - RMER17D2 LTR ERVK -697 112 1 3 1308 762 100 8 62 chr5 94791266 94791394 -57745865 - RMER16-int LTR ERVK -1207 4199 4079 3 1308 4253 133 50 92 chr5 94791394 94792081 -57745178 - RMER16-int LTR ERVK -3017 2389 1675 3 1308 912 109 0 149 chr5 94792081 94792242 -57745017 + B1_Mm SINE Alu 1 137 -10 3 1308 4253 133 50 92 chr5 94792242 94792414 -57744845 - RMER16-int LTR ERVK -3732 1674 1566 3 1308 322 259 71 71 chr5 94792467 94792650 -57744609 - SRV_MM-int LTR ERVK -3812 2355 2173 3 1308 815 261 48 150 chr5 94792707 94793043 -57744216 - ETnERV2-int LTR ERVK -4859 2547 2250 3 1308 327 105 0 0 chr5 94793043 94793100 -57744159 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1308 815 261 48 150 chr5 94793100 94793156 -57744103 - ETnERV2-int LTR ERVK -5157 2249 2196 3 1308 275 208 0 0 chr5 94793128 94793176 -57744083 - ETnERV2-int LTR ERVK -1730 1584 1537 3 1308 527 228 8 16 chr5 94793361 94793490 -57743769 - ETnERV2-int LTR ERVK -3822 1584 1457 3 1308 7309 89 6 1 chr5 94793490 94794781 -57742478 - L1Md_F2 LINE L1 0 6582 5282 3 1308 180 0 0 0 chr5 94794856 94794876 -57742383 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 3 1308 240 162 0 0 chr5 94795178 94795215 -57742044 - RMER10A LTR ERVL -394 48 12 3 1308 3627 35 104 5 chr5 94795310 94795742 -57741517 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1308 1054 235 97 10 chr5 94796738 94797047 -57740212 - L1_Mur2 LINE L1 -893 4984 4649 3 1308 1841 208 22 0 chr5 94797042 94797402 -57739857 - Lx2B LINE L1 -393 6607 6240 3 1308 244 308 40 90 chr5 94797506 94797606 -57739653 - PB1D7 SINE Alu -23 97 3 3 1308 1523 217 33 83 chr5 94797734 94797963 -57739296 + RMER16 LTR ERVK 1 320 -213 3 1308 2333 162 30 0 chr5 94797963 94798359 -57738900 - Lx LINE L1 -7 6647 6240 3 1308 1523 222 62 33 chr5 94798359 94798573 -57738686 + RMER16 LTR ERVK 321 533 0 3 1308 1213 246 93 23 chr5 94798924 94799278 -57737981 + Lx7 LINE L1 7010 7388 -308 3 1308 1962 226 31 12 chr5 94799261 94799678 -57737581 - Lx4A LINE L1 0 7058 6634 3 1308 381 237 13 67 chr5 94799673 94799822 -57737437 + Lx7 LINE L1 7371 7511 -185 3 1308 251 207 33 49 chr5 94800059 94800120 -57737139 - B1_Mus2 SINE Alu 0 147 88 3 1308 4680 20 0 0 chr5 94800120 94800613 -57736646 + MT2_Mm LTR ERVL 1 493 0 3 1308 48253 16 8 0 chr5 94800613 94805944 -57731315 + MERVL-int LTR ERVL 1 5371 -114 3 1308 372 137 13 40 chr5 94805944 94806020 -57731239 + ORR1A3-int LTR MaLR 567 640 -1323 3 1308 322 0 0 0 chr5 94806020 94806058 -57731201 + MERVL-int LTR ERVL 5448 5485 0 3 1308 4713 16 0 0 chr5 94806058 94806551 -57730708 + MT2_Mm LTR ERVL 1 493 0 3 1308 403 261 33 0 chr5 94806551 94806643 -57730616 - B1_Mur4 SINE Alu -55 95 1 3 1308 222 376 108 10 chr5 94806555 94806657 -57730602 - B4 SINE B4 -113 179 68 3 1308 328 314 56 21 chr5 94806677 94806820 -57730439 - B1_Mur4 SINE Alu -2 148 1 3 1308 459 333 0 0 chr5 94806829 94806961 -57730298 - B1_Mur1 SINE Alu -8 141 10 3 1308 575 288 7 0 chr5 94806990 94807143 -57730116 - B3 SINE B2 -3 213 60 3 1308 326 345 80 15 chr5 94807314 94807514 -57729745 - ID_B1 SINE B4 -8 216 4 3 1308 267 247 64 118 chr5 94807761 94807871 -57729388 + PB1D7 SINE Alu 3 106 -14 3 1308 356 184 0 60 chr5 94808705 94808821 -57728438 + T-rich Low_complexity Low_complexity 2 110 0 3 1308 287 174 50 30 chr5 94808950 94809051 -57728208 + T-rich Low_complexity Low_complexity 5 107 0 3 1308 231 247 0 36 chr5 94809077 94809161 -57728098 - Lx3B LINE L1 -5 6968 6888 3 1308 180 0 0 0 chr5 94809166 94809186 -57728073 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1308 1176 89 7 0 chr5 94809186 94809332 -57727927 - B1_Mus1 SINE Alu 0 148 2 3 1308 4122 194 47 3 chr5 94809342 94810103 -57727156 - Lx2B LINE L1 -3 6997 6203 3 1308 31 26 0 0 chr5 94810913 94810951 -57726308 + AT_rich Low_complexity Low_complexity 1 38 0 3 1308 309 331 16 16 chr5 94814349 94814478 -57722781 + RMER10B LTR ERVL 213 341 -57 3 1308 590 275 0 47 chr5 94814904 94815095 -57722164 - B2_Mm2 SINE B2 -12 183 2 3 1308 36659 82 11 23 chr5 94815188 94821619 -57715640 - L1Md_F2 LINE L1 -5 6577 301 3 1308 337 0 41 20 chr5 94821622 94821671 -57715588 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 3 1308 774 212 22 7 chr5 94821671 94821809 -57715450 - B1_Mur3 SINE Alu -9 140 1 3 1308 506 263 29 7 chr5 94821817 94821955 -57715304 + Lx7 LINE L1 7548 7688 -8 3 1308 471 262 14 32 chr5 94821978 94822172 -57715087 + B3 SINE B2 1 186 -9 3 1308 653 240 200 6 chr5 94822207 94822387 -57714872 - B3 SINE B2 -1 215 1 3 1308 2732 133 8 171 chr5 94822724 94823350 -57713909 + RMER2 LTR ERV1 44 567 0 3 1308 2181 130 6 3 chr5 94824080 94824436 -57712823 - MusHAL1 LINE L1 -636 2076 1720 3 1308 279 0 0 0 chr5 94824524 94824555 -57712704 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1308 333 276 30 30 chr5 94825152 94825283 -57711976 + MuRRS4-int LTR ERV1 1302 1432 -3631 3 1308 438 330 61 11 chr5 94825993 94826323 -57710936 + MURVY-int LTR ERV1 4019 4360 -3241 3 1308 1268 300 51 7 chr5 94826600 94827036 -57710223 + MuRRS4-int LTR ERV1 3556 3954 -1109 3 1308 3413 136 18 18 chr5 94827467 94828029 -57709230 + RMER2 LTR ERV1 1 562 -5 4 1308 2834 147 78 14 chr5 94828136 94828639 -57708620 - RLTR33 LTR ERVK -143 535 1 4 1308 288 257 129 26 chr5 94828841 94828957 -57708302 - RSINE1 SINE B4 -34 131 4 4 1308 687 193 32 58 chr5 94829016 94829170 -57708089 - B1_Mur4 SINE Alu 0 150 1 4 1308 238 333 73 36 chr5 94829204 94829341 -57707918 - B1_Mur3 SINE Alu -7 142 1 4 1308 315 364 8 8 chr5 94829350 94829480 -57707779 - B1_Mur1 SINE Alu -8 141 12 4 1308 492 275 84 28 chr5 94829513 94829655 -57707604 - B3 SINE B2 -7 209 60 4 1308 237 339 76 30 chr5 94829816 94829947 -57707312 - B1F SINE Alu 0 149 13 4 1308 495 314 87 25 chr5 94829830 94830026 -57707233 - ID_B1 SINE B4 -12 212 5 4 1308 241 286 15 145 chr5 94830281 94830412 -57706847 + PB1D7 SINE Alu 3 116 -4 4 1308 250 240 29 20 chr5 94831307 94831409 -57705850 + T-rich Low_complexity Low_complexity 2 104 0 4 1308 279 267 0 0 chr5 94831436 94831522 -57705737 - Lx3B LINE L1 0 6973 6888 4 1308 740 110 10 47 chr5 94831560 94831749 -57705510 - Lx LINE L1 -15 6639 6401 4 1308 2978 183 72 5 chr5 94831748 94832330 -57704929 - Lx2B LINE L1 -41 6959 6339 4 1308 6896 104 13 2 chr5 94832376 94833567 -57703692 - L1_Mus1 LINE L1 0 6567 5363 4 1308 1172 84 0 14 chr5 94833567 94833712 -57703547 - B1_Mus1 SINE Alu -5 143 1 4 1308 674 215 6 45 chr5 94833714 94833833 -57703426 - Lx2B LINE L1 -648 6352 6238 4 1308 4100 138 23 54 chr5 94833833 94834608 -57702651 - RMER17A LTR ERVK 0 751 1 4 1308 674 215 6 45 chr5 94834608 94834644 -57702615 - Lx2B LINE L1 -763 6237 6203 4 1308 7455 71 6 0 chr5 94834680 94835635 -57701624 - L1Md_F2 LINE L1 0 6582 5622 4 1308 9720 111 22 26 chr5 94835637 94837144 -57700115 + MMETn-int LTR ERVK 3344 4844 0 4 1308 2003 138 9 51 chr5 94837144 94837480 -57699779 + RLTRETN_Mm LTR ERVK 1 322 0 4 1308 21248 192 31 5 chr5 94837480 94842536 -57694723 - Lx2B LINE L1 -262 5615 466 4 1308 3706 20 2 0 chr5 94843958 94844353 -57692906 - MTA_Mm LTR MaLR 0 396 1 4 1308 6483 84 1 6 chr5 94844970 94845828 -57691431 + L1Md_F2 LINE L1 4732 5585 -298 4 1308 8346 58 8 0 chr5 94845829 94846815 -57690444 + L1Md_F2 LINE L1 5587 6580 -2 4 1308 534 266 63 29 chr5 94847831 94848005 -57689254 + B3A SINE B2 6 185 -13 4 1308 559 262 0 51 chr5 94848324 94848461 -57688798 - B2_Mm2 SINE B2 -64 131 2 4 1308 225 0 0 0 chr5 94848606 94848631 -57688628 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4 1308 3895 244 11 23 chr5 94849419 94850336 -57686923 - Lx5 LINE L1 -1 7049 6144 4 1308 4045 103 0 0 chr5 94850357 94850912 -57686347 - L1_Mur1 LINE L1 -845 5041 4487 4 1308 1432 134 5 0 chr5 94850908 94851125 -57686134 - L1_Mus4 LINE L1 -232 6404 6187 4 1308 728 244 112 84 chr5 94851124 94851420 -57685839 - L1_Mur1 LINE L1 -6668 314 11 4 1308 5713 40 8 0 chr5 94851448 94852097 -57685162 - L1Md_F3 LINE L1 0 6584 5931 4 1308 6241 78 28 4 chr5 94852096 94852884 -57684375 - L1_Mus1 LINE L1 -1 6566 5760 4 1308 7594 190 49 12 chr5 94852886 94853783 -57683476 - L1_Mur2 LINE L1 -2894 2983 2049 4 1308 600 40 0 0 chr5 94853783 94853858 -57683401 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 1308 7594 191 55 9 chr5 94853858 94854906 -57682353 - L1_Mur2 LINE L1 -3829 2048 901 4 1308 466 230 67 78 chr5 94855159 94855352 -57681907 + MTC-int LTR MaLR 1062 1252 -6 4 1308 1683 229 72 5 chr5 94855357 94855744 -57681515 + MTC LTR MaLR 1 413 -8 4 1308 241 176 20 0 chr5 94855747 94855798 -57681461 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1308 696 261 33 95 chr5 94857208 94857390 -57679869 - RMER12B LTR ERVK -2 1402 1234 4 1308 528 16 0 0 chr5 94857390 94857451 -57679808 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1308 696 261 33 95 chr5 94857451 94857485 -57679774 - RMER12B LTR ERVK -171 1233 1198 4 1308 225 0 0 0 chr5 94857485 94857510 -57679749 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 1308 735 69 0 0 chr5 94857511 94857613 -57679646 + (CA)n Simple_repeat Simple_repeat 2 103 0 4 1308 696 261 33 95 chr5 94857613 94857634 -57679625 - RMER12B LTR ERVK -207 1197 1177 4 1308 1057 214 82 42 chr5 94857621 94857952 -57679307 - RLTR21 LTR ERVK -426 1146 803 4 1308 30 27 0 0 chr5 94857990 94858027 -57679232 + AT_rich Low_complexity Low_complexity 1 37 0 4 1308 946 182 24 13 chr5 94858334 94858568 -57678691 - L1_Rod LINE L1 -585 3329 3104 4 1308 3547 43 2 0 chr5 94858569 94858964 -57678295 - MTA_Mm LTR MaLR 0 396 1 4 1308 9970 21 4 2 chr5 94858964 94860060 -57677199 - MTA_Mm-int LTR MaLR 0 1098 1 4 1308 932 35 9 0 chr5 94860060 94860176 -57677083 - MTA_Mm LTR MaLR 0 396 280 4 1308 1581 26 5 0 chr5 94860165 94860356 -57676903 + MTA_Mm LTR MaLR 205 396 0 4 1308 397 184 0 58 chr5 94860356 94860460 -57676799 - Lx LINE L1 -33 6621 6524 4 1308 246 32 0 0 chr5 94860692 94860723 -57676536 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1308 1212 83 7 0 chr5 94860732 94860877 -57676382 - B1_Mm SINE Alu 0 147 2 4 1308 229 351 0 13 chr5 94861558 94861633 -57675626 + ID4_ SINE ID 8 81 -2 4 1308 310 331 97 19 chr5 94862292 94862446 -57674813 - B3A SINE B2 -11 187 22 4 1308 1073 106 7 0 chr5 94864214 94864355 -57672904 - B1_Mus1 SINE Alu -5 143 2 4 1308 1483 68 5 10 chr5 94866238 94866431 -57670828 + B2_Mm1t SINE B2 1 192 -1 4 1308 522 0 0 0 chr5 94866716 94866774 -57670485 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1308 275 0 29 0 chr5 94866774 94866808 -57670451 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1308 272 330 0 74 chr5 94867515 94867623 -57669636 - PB1D7 SINE Alu -20 100 1 4 1308 333 341 100 26 chr5 94867874 94868064 -57669195 + ID_B1 SINE B4 1 204 -20 4 1308 510 301 83 0 chr5 94868152 94868345 -57668914 + B3 SINE B2 2 210 -6 4 1308 619 221 20 20 chr5 94868516 94868664 -57668595 + B1_Mus1 SINE Alu 1 148 0 4 1308 366 278 19 83 chr5 94868690 94868847 -57668412 + B1_Mur4 SINE Alu 3 149 -1 4 1308 264 204 0 0 chr5 94868927 94868976 -57668283 + RSINE1 SINE B4 3 51 -114 4 1308 991 90 12 49 chr5 94869543 94869706 -57667553 - L1_Mus3 LINE L1 -7 6631 6475 4 1308 1355 152 4 47 chr5 94869706 94869961 -57667298 + L1_Mus4 LINE L1 5891 6134 -502 4 1308 253 282 14 0 chr5 94871477 94871548 -57665711 - B3 SINE B2 -144 72 1 4 1308 666 218 21 7 chr5 94871565 94871708 -57665551 - Lx7 LINE L1 -2 7694 7550 4 1308 253 298 145 0 chr5 94871719 94871843 -57665416 + B1F2 SINE Alu 7 148 -1 4 1308 751 276 93 83 chr5 94871963 94872243 -57665016 - Lx7 LINE L1 -177 7519 7227 4 1308 1148 103 0 0 chr5 94872243 94872389 -57664870 + B1_Mus1 SINE Alu 3 148 0 4 1308 751 276 93 83 chr5 94872389 94872590 -57664669 - Lx7 LINE L1 -470 7226 7033 4 1308 1006 223 9 5 chr5 94872613 94872829 -57664430 - L1_Mur2 LINE L1 -207 5670 5454 4 1308 369 0 0 0 chr5 94873678 94873719 -57663540 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1308 231 114 0 0 chr5 94873762 94873797 -57663462 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1308 3203 210 22 0 chr5 94873797 94874537 -57662722 - Lx2B LINE L1 0 6997 6210 4 1308 351 279 29 99 chr5 94878012 94878183 -57659076 + RMER10B LTR ERVL 228 386 -12 4 1308 448 319 42 6 chr5 94878160 94878327 -57658932 + B3A SINE B2 8 180 -18 4 1308 403 312 0 64 chr5 94878592 94878763 -57658496 - B2_Mm2 SINE B2 -21 174 15 4 1308 21 57 0 0 chr5 94879274 94879309 -57657950 + AT_rich Low_complexity Low_complexity 1 35 0 4 1308 6447 232 15 24 chr5 94879717 94880167 -57657092 - Lx5 LINE L1 0 7050 6622 4 1308 1538 210 150 54 chr5 94880167 94880574 -57656685 - RLTR41 LTR ERV1 0 446 1 4 1308 6447 227 22 25 chr5 94880574 94881757 -57655502 - Lx5 LINE L1 -429 6621 5428 4 1308 665 100 8 32 chr5 94881757 94881881 -57655378 - L1Md_F3 LINE L1 -1 6583 6463 4 1308 3421 220 33 26 chr5 94881881 94882111 -57655148 - Lx5 LINE L1 -450 5427 5190 4 1308 189 0 0 0 chr5 94882111 94882132 -57655127 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1308 3421 220 33 26 chr5 94882132 94882290 -57654969 - Lx5 LINE L1 -688 5189 5029 4 1308 1740 270 105 15 chr5 94882292 94882834 -57654425 + Lx5 LINE L1 6443 7033 -17 4 1308 295 160 20 0 chr5 94882852 94882902 -57654357 - Lx5 LINE L1 -557 6493 6443 4 1308 2941 81 0 0 chr5 94882906 94883288 -57653971 + L1_Mm LINE L1 4757 5138 -745 4 1308 8273 50 1 3 chr5 94883322 94884453 -57652806 - L1Md_F2 LINE L1 -2 6580 5453 4 1308 5054 70 1 8 chr5 94884450 94885110 -57652149 + L1Md_F2 LINE L1 4800 5455 -428 4 1308 638 184 35 7 chr5 94885102 94885244 -57652015 - L1_Mur2 LINE L1 -684 5193 5048 4 1308 390 237 10 0 chr5 94885316 94885413 -57651846 + MTC-int LTR MaLR 909 1006 -252 4 1308 186 167 0 0 chr5 94885511 94885547 -57651712 + T-rich Low_complexity Low_complexity 4 39 0 4 1308 5255 121 15 0 chr5 94885556 94886290 -57650969 - L1_Mus3 LINE L1 -9 6629 5885 4 1308 248 228 19 19 chr5 94886381 94886484 -57650775 + (TA)n Simple_repeat Simple_repeat 2 104 0 4 1308 407 155 114 0 chr5 94886802 94886894 -57650365 - MTC LTR MaLR 0 421 268 4 1308 348 256 39 0 chr5 94886920 94886998 -57650261 - Lx5 LINE L1 -170 6880 6800 4 1308 1844 171 76 18 chr5 94887025 94887406 -57649853 + RLTR9E LTR ERVK 7 409 0 4 1308 543 182 10 0 chr5 94887406 94887500 -57649759 - MTC LTR MaLR -103 318 224 4 1308 1604 198 15 6 chr5 94887490 94887820 -57649439 - MTC-int LTR MaLR -451 807 475 4 1308 657 195 38 19 chr5 94887822 94887979 -57649280 + MTD LTR MaLR 260 419 0 4 1308 323 186 86 0 chr5 94887996 94888066 -57649193 - B3 SINE B2 -135 81 6 4 1308 383 308 9 0 chr5 94888080 94888187 -57649072 - MTC LTR MaLR -228 146 39 4 1308 749 73 0 0 chr5 94889010 94889106 -57648153 + B1_Mm SINE Alu 52 147 0 4 1308 501 304 33 37 chr5 94889120 94889650 -57647609 + L1MA4A LINE L1 5476 5972 -1488 4 1308 316 147 80 0 chr5 94889941 94890016 -57647243 - Lx9 LINE L1 -1 7643 7563 4 1308 459 0 0 0 chr5 94890022 94890073 -57647186 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1308 337 266 8 8 chr5 94890225 94890350 -57646909 + L1VL1 LINE L1 276 400 -6022 4 1308 346 286 15 8 chr5 94890476 94890610 -57646649 + L1VL4 LINE L1 675 809 -5807 4 1308 23192 125 11 12 chr5 94890612 94894989 -57642270 + L1VL4 LINE L1 725 5105 -778 4 1308 352 177 0 0 chr5 94894986 94895048 -57642211 - L1_Mm LINE L1 -1248 4635 4574 4 1308 6675 85 2 217 chr5 94895042 94895832 -57641427 + L1_Mus1 LINE L1 4642 5419 -464 4 163 3008 54 0 10 chr5 94895832 94896224 -57641035 + L1Md_F2 LINE L1 6185 6572 -10 5 1309 6977 81 4 74 chr5 94896224 94897701 -57639558 + L1_Mus1 LINE L1 5420 6654 0 4 1309 846 199 124 0 chr5 94898223 94898424 -57638835 - URR1A DNA MER1_type 0 226 1 5 1309 4883 107 13 1 chr5 94898724 94899434 -57637825 - L1_Mus3 LINE L1 -5 6633 5916 5 1309 314 73 0 5 chr5 94899434 94899487 -57637772 - PB1D9 SINE Alu -94 55 4 5 1309 4745 111 7 1 chr5 94899487 94900287 -57636972 - L1VL1 LINE L1 -1934 1764 964 5 1309 1338 66 55 0 chr5 94900287 94900468 -57636791 - B2_Mm2 SINE B2 -3 192 2 5 1309 3256 145 165 9 chr5 94900468 94901067 -57636192 - L1VL1 LINE L1 -5459 963 246 5 1309 693 271 131 46 chr5 94901222 94901407 -57635852 - MTEb LTR MaLR -21 358 167 5 1309 2576 100 79 0 chr5 94901407 94901788 -57635471 - RLTR10A LTR ERVK 0 411 1 5 1309 693 271 131 46 chr5 94901788 94901931 -57635328 - MTEb LTR MaLR -213 166 2 5 1309 3927 50 0 0 chr5 94901939 94902414 -57634845 + MT2C_Mm LTR ERVL 1 475 0 5 1309 428 237 67 22 chr5 94902775 94902909 -57634350 + B1_Mur3 SINE Alu 2 141 -8 5 1309 723 348 61 23 chr5 94902950 94903294 -57633965 + MTEa LTR MaLR 3 359 -20 5 1309 7186 70 3 7 chr5 94903848 94904884 -57632375 - L1_Mus1 LINE L1 -4 6563 5540 5 1309 655 316 22 106 chr5 94905024 94905392 -57631867 + RMER5 LTR ERV1 13 349 -185 5 1309 2970 95 7 0 chr5 94905394 94905803 -57631456 - L1_Mus1 LINE L1 0 6567 6156 5 1309 3558 48 0 0 chr5 94905807 94906264 -57630995 + L1Md_F2 LINE L1 5655 6111 -471 5 1309 571 246 54 11 chr5 94906284 94906469 -57630790 + RMER5 LTR ERV1 331 523 -11 5 1309 210 45 0 64 chr5 94906474 94906521 -57630738 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 5 1309 301 322 19 19 chr5 94906727 94906933 -57630326 - Lx9 LINE L1 -161 7483 7278 5 1309 467 292 29 0 chr5 94907267 94907404 -57629855 - B1F SINE Alu -7 142 2 5 1309 346 319 93 10 chr5 94907506 94907699 -57629560 - ID_B1 SINE B4 -11 213 5 5 1309 255 114 0 0 chr5 94907876 94907920 -57629339 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1309 354 138 0 0 chr5 94907920 94907978 -57629281 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1309 962 146 79 0 chr5 94907987 94908151 -57629108 + MTC LTR MaLR 12 188 -233 5 1309 2467 237 101 71 chr5 94908184 94909116 -57628143 + MT-int LTR MaLR 4 963 -135 5 1309 433 280 93 42 chr5 94909123 94909339 -57627920 - Lx6 LINE L1 -26 7434 7208 5 1309 15961 204 75 14 chr5 94909360 94914088 -57623171 - Lx5 LINE L1 -2 7048 2055 5 1309 315 71 0 0 chr5 94914088 94914130 -57623129 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1309 15961 187 66 15 chr5 94914130 94914425 -57622834 - Lx5 LINE L1 -3823 2054 1723 5 1309 2512 126 56 19 chr5 94914477 94914939 -57622320 - L1_Mur2 LINE L1 -907 4970 4492 5 1309 2175 209 236 45 chr5 94915401 94915915 -57621344 - L1_Mur2 LINE L1 -1380 4500 3811 5 1309 891 109 70 0 chr5 94915915 94916043 -57621216 - B1_Mus2 SINE Alu -10 137 1 5 1309 2175 209 236 45 chr5 94916043 94916311 -57620948 - L1_Mur2 LINE L1 -2070 3810 3546 5 1309 402 248 217 75 chr5 94916311 94916633 -57620626 - RLTR9A LTR ERVK 0 368 1 5 1309 2175 209 236 45 chr5 94916633 94916701 -57620558 - L1_Mur2 LINE L1 -2335 3545 3486 5 1309 729 201 103 7 chr5 94916707 94916852 -57620407 - ORR1A2 LTR MaLR -68 259 101 5 1309 1529 201 45 8 chr5 94916852 94917253 -57620006 - L1_Mur2 LINE L1 -3948 1929 1514 5 1309 2014 234 28 2 chr5 94917415 94917847 -57619412 - RLTR21 LTR ERVK -1124 448 6 5 1309 1216 178 61 10 chr5 94918141 94918437 -57618822 - MYSERV6-int LTR ERVK -1250 7709 7399 5 1309 790 197 27 11 chr5 94918480 94918665 -57618594 - B2_Mm2 SINE B2 -6 189 2 5 1309 338 149 15 15 chr5 94918693 94918761 -57618498 - ORR1A4 LTR MaLR -8 321 254 5 1309 446 262 27 14 chr5 94918748 94918895 -57618364 - RLTR12B LTR ERVK -341 187 39 5 1309 1256 250 46 76 chr5 94918915 94919484 -57617775 - MYSERV6-int LTR ERVK -56 8903 8426 5 1309 570 29 0 0 chr5 94919485 94919553 -57617706 + (TC)n Simple_repeat Simple_repeat 2 69 0 5 1309 977 157 17 11 chr5 94919669 94919843 -57617416 - B2_Mm2 SINE B2 -20 175 1 5 1309 1061 185 27 27 chr5 94919843 94920099 -57617160 - L1_Mur2 LINE L1 -3864 2013 1758 5 1309 5463 128 50 21 chr5 94920099 94920837 -57616422 + L1VL2 LINE L1 38 783 -5552 5 1309 2956 51 0 0 chr5 94920837 94921209 -57616050 - L1Md_F3 LINE L1 -14 6570 6199 5 1309 5463 95 64 8 chr5 94921209 94921532 -57615727 + L1VL2 LINE L1 784 1127 -2488 5 1309 343 251 67 73 chr5 94921646 94921800 -57615459 - RLTR13D3 LTR ERVK 0 1114 981 5 1309 1477 43 0 26 chr5 94922248 94922438 -57614821 + B2_Mm1t SINE B2 2 186 -7 5 1309 5552 131 45 4 chr5 94922855 94924142 -57613117 - Lx LINE L1 0 6638 5314 5 1309 3626 62 4 6 chr5 94924159 94924631 -57612628 - L1Md_F2 LINE L1 -13 6569 6099 5 1309 6623 73 1 6 chr5 94924631 94925772 -57611487 + L1Md_F2 LINE L1 4951 6086 -498 5 1309 20676 96 25 10 chr5 94925770 94930411 -57606848 - Lx LINE L1 -580 5306 233 5 1309 348 271 39 39 chr5 94931645 94931772 -57605487 + RMER10B LTR ERVL 216 342 -56 5 1309 339 351 23 65 chr5 94931797 94932013 -57605246 + B3 SINE B2 6 212 -4 5 1309 801 194 27 64 chr5 94932298 94932518 -57604741 + RMER3D-int LTR ERVK 1998 2209 -633 5 1309 459 250 36 68 chr5 94932583 94932738 -57604521 - Lx7 LINE L1 0 7696 7543 5 1309 477 229 114 0 chr5 94932738 94932869 -57604390 + B1_Mus2 SINE Alu 1 146 -1 5 1309 459 250 36 68 chr5 94932869 94932932 -57604327 - Lx7 LINE L1 -154 7542 7485 5 1309 314 206 0 88 chr5 94932932 94932951 -57604308 + B4 SINE B4 72 144 -148 5 1309 385 119 0 33 chr5 94932951 94933012 -57604247 + PB1D9 SINE Alu 1 59 -61 5 1309 261 0 306 0 chr5 94933017 94933141 -57604118 + (CAGG)n Simple_repeat Simple_repeat 2 163 0 5 1309 739 95 0 9 chr5 94933146 94933252 -57604007 + B1_Mus2 SINE Alu 42 146 -1 5 1309 28 0 0 0 chr5 94933267 94933295 -57603964 + AT_rich Low_complexity Low_complexity 1 28 0 5 1309 815 281 38 63 chr5 94933340 94933738 -57603521 - Lx7 LINE L1 -273 7423 7036 5 1309 6907 226 35 20 chr5 94933761 94935803 -57601456 - L1_Mur2 LINE L1 -207 5670 3598 5 1309 666 159 0 0 chr5 94935803 94935929 -57601330 + (TAGA)n Simple_repeat Simple_repeat 2 127 0 5 1309 10216 128 13 39 chr5 94936175 94937131 -57600128 - L1_Mus3 LINE L1 -7 6631 5686 5 1309 1245 96 70 5 chr5 94937131 94937331 -57599928 + L1Md_F2 LINE L1 6368 6580 -2 5 1309 10216 163 32 97 chr5 94937331 94937971 -57599288 - L1_Mus3 LINE L1 -198 5685 5116 5 1309 1097 103 0 0 chr5 94937971 94938117 -57599142 - B1_Mus2 SINE Alu 0 147 2 5 1309 10216 163 32 97 chr5 94938117 94938954 -57598305 - L1_Mus3 LINE L1 -768 5115 4272 5 1309 384 179 0 35 chr5 94938954 94939041 -57598218 - B2_Mm2 SINE B2 -17 178 95 5 1309 10216 163 32 97 chr5 94939041 94939781 -57597478 - L1_Mus3 LINE L1 -768 4271 3523 5 1309 1338 112 9 0 chr5 94939776 94940037 -57597222 - L1VL1 LINE L1 -2544 1154 892 5 1309 261 0 0 0 chr5 94940045 94940074 -57597185 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 5 1309 730 123 9 0 chr5 94940075 94940189 -57597070 - B1_Mm SINE Alu 0 147 33 5 1309 1105 72 114 0 chr5 94940209 94940375 -57596884 - B2_Mm1a SINE B2 -7 186 2 5 1309 229 146 0 0 chr5 94940375 94940416 -57596843 - L1_Mus3 LINE L1 -5506 1110 1070 5 1309 278 283 29 157 chr5 94940413 94940585 -57596674 + L1VL1 LINE L1 208 357 -6065 5 1309 352 273 21 14 chr5 94940653 94940794 -57596465 + L1Md_F LINE L1 662 803 -5813 5 1309 1891 186 23 103 chr5 94940803 94941291 -57595968 + L1Md_F LINE L1 726 1211 -5405 5 1309 429 36 0 0 chr5 94941291 94941346 -57595913 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1309 19295 121 8 11 chr5 94941346 94945108 -57592151 + L1Md_F LINE L1 1174 4914 -969 5 1309 3946 24 32 140 chr5 94945108 94945785 -57591474 + RLTR6_Mm LTR ERV1 1 604 -50 5 1309 6587 20 54 18 chr5 94945786 94946586 -57590673 + RLTR6-int LTR ERV1 1 829 -6949 5 1309 403 301 0 59 chr5 94946580 94946732 -57590527 + MMVL30-int LTR ERV1 391 533 -7023 5 1309 9122 34 61 15 chr5 94947080 94949879 -57587380 + MMVL30-int LTR ERV1 772 3698 0 5 1309 3783 25 34 145 chr5 94949879 94950536 -57586723 + RLTR6_Mm LTR ERV1 1 584 -70 5 1309 5908 113 5 123 chr5 94950536 94951127 -57586132 + L1_Mus1 LINE L1 4911 5499 -384 5 1309 971 137 7 0 chr5 94951127 94951273 -57585986 + B1_Mus2 SINE Alu 1 147 0 5 1309 1202 54 0 20 chr5 94951277 94951427 -57585832 + B1_Mm SINE Alu 1 147 0 5 1309 5908 113 5 123 chr5 94951427 94951517 -57585742 + L1_Mus1 LINE L1 5500 5500 -383 5 1309 1119 102 0 0 chr5 94951517 94951664 -57585595 + B1_Mus2 SINE Alu 1 147 0 5 1309 7530 76 4 40 chr5 94951664 94952642 -57584617 + L1_Mus1 LINE L1 5500 6424 -143 5 1309 1119 75 7 0 chr5 94952642 94952788 -57584471 - B1_Mus2 SINE Alu 0 147 1 5 1309 7530 71 4 29 chr5 94952788 94952936 -57584323 + L1_Mus1 LINE L1 6425 6567 0 5 1309 302 303 0 0 chr5 94953343 94953432 -57583827 - B3 SINE B2 -127 89 1 5 1309 1503 259 20 113 chr5 94953433 94953602 -57583657 - Lx7 LINE L1 -1 7695 7549 5 1309 409 203 161 15 chr5 94953602 94953732 -57583527 + B1F2 SINE Alu 1 149 0 5 1309 1503 255 18 122 chr5 94953732 94953863 -57583396 - Lx7 LINE L1 -148 7548 7446 5 1309 266 0 0 29 chr5 94953863 94953898 -57583361 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1309 1503 255 18 122 chr5 94953898 94954340 -57582919 - Lx7 LINE L1 -251 7445 7043 5 1309 3845 229 12 34 chr5 94954351 94955021 -57582238 - L1_Mur2 LINE L1 -204 5673 5019 5 1309 2663 136 38 40 chr5 94955021 94955497 -57581762 + MT2C_Mm LTR ERVL 1 475 0 5 1309 3845 229 12 34 chr5 94955497 94955874 -57581385 - L1_Mur2 LINE L1 -859 5018 4649 5 1309 1930 176 16 45 chr5 94955869 94956141 -57581118 - Lx2B LINE L1 -393 6607 6338 5 1309 903 171 0 0 chr5 94956141 94956287 -57580972 + B1_Mus1 SINE Alu 1 146 -2 5 1309 1930 176 16 45 chr5 94956287 94956389 -57580870 - Lx2B LINE L1 -663 6337 6244 5 1309 218 329 14 0 chr5 94956532 94956602 -57580657 - PB1D7 SINE Alu -49 71 1 5 1309 1323 232 76 17 chr5 94956751 94956952 -57580307 + RMER16 LTR ERVK 103 326 -207 5 1309 2004 165 61 2 chr5 94956952 94957346 -57579913 - Lx LINE L1 -7 6647 6231 5 1309 1323 232 76 17 chr5 94957346 94957551 -57579708 + RMER16 LTR ERVK 327 532 -1 5 1309 235 392 32 13 chr5 94958017 94958172 -57579087 + B3A SINE B2 25 182 -16 5 1309 1165 264 113 46 chr5 94958179 94958611 -57578648 + Lx7 LINE L1 6901 7361 -335 5 1309 1670 11 21 0 chr5 94958651 94958839 -57578420 - B2_Mm1a SINE B2 0 193 2 5 1309 1938 239 14 12 chr5 94958847 94959271 -57577988 - Lx4A LINE L1 0 7058 6634 5 1309 410 227 12 72 chr5 94959251 94959417 -57577842 + Lx7 LINE L1 7356 7511 -185 5 1309 228 280 97 29 chr5 94959482 94959585 -57577674 - RSINE1 SINE B4 -38 127 18 5 1309 505 238 8 8 chr5 94959658 94959785 -57577474 - B1_Mm SINE Alu 0 147 21 5 1309 429 225 53 60 chr5 94959829 94959980 -57577279 - B1_Mur4 SINE Alu 0 150 1 5 1309 368 368 0 0 chr5 94959989 94960125 -57577134 - B1_Mur1 SINE Alu -8 141 6 5 1309 958 109 0 35 chr5 94960154 94960296 -57576963 + B1_Mus1 SINE Alu 1 137 -11 5 1309 252 0 0 0 chr5 94960296 94960324 -57576935 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1309 472 331 0 0 chr5 94960328 94960479 -57576780 - B3 SINE B2 -5 211 61 5 1309 213 342 58 75 chr5 94960669 94960789 -57576470 - B1F SINE Alu -28 121 4 5 1309 269 263 9 92 chr5 94961113 94961222 -57576037 + PB1D7 SINE Alu 3 102 -18 5 1309 201 39 0 0 chr5 94962175 94962201 -57575058 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1309 303 197 61 0 chr5 94962289 94962355 -57574904 - Lx3B LINE L1 -6 6967 6898 5 1309 3344 203 78 4 chr5 94962369 94963102 -57574157 - Lx2B LINE L1 -11 6989 6203 6 1309 3229 93 48 7 chr5 94963111 94963574 -57573685 + RLTR45 LTR ERVK 1 482 0 6 1309 230 128 0 41 chr5 94964400 94964417 -57572842 + (TAA)n Simple_repeat Simple_repeat 1 17 0 6 1309 240 35 0 0 chr5 94964417 94964446 -57572813 + (TTA)n Simple_repeat Simple_repeat 3 31 0 6 1309 230 128 0 41 chr5 94964446 94964477 -57572782 + (TAA)n Simple_repeat Simple_repeat 3 32 0 6 1309 1074 91 0 0 chr5 94964602 94964745 -57572514 + B1_Mus2 SINE Alu 5 147 0 6 1309 189 0 0 0 chr5 94965989 94966010 -57571249 + (CTTG)n Simple_repeat Simple_repeat 2 22 0 6 1309 234 0 0 0 chr5 94966008 94966034 -57571225 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1309 576 156 101 0 chr5 94966034 94966143 -57571116 - PB1D9 SINE Alu 0 120 1 6 1309 307 263 17 26 chr5 94968188 94968305 -57568954 + RMER10B LTR ERVL 227 342 -56 6 1309 7227 57 5 0 chr5 94968341 94969269 -57567990 + L1_Mm LINE L1 2424 3356 -2527 6 1309 398 323 30 6 chr5 94969278 94969443 -57567816 + B3A SINE B2 8 176 -22 6 1309 29 0 0 0 chr5 94969480 94969509 -57567750 + AT_rich Low_complexity Low_complexity 1 29 0 6 1309 794 203 43 145 chr5 94969578 94969929 -57567330 - RLTRETN_Mm LTR ERVK 0 322 8 6 1309 572 225 5 80 chr5 94970086 94970274 -57566985 - B2_Mm2 SINE B2 -21 174 1 6 1309 3460 67 23 2 chr5 94970408 94970845 -57566414 - L1_Mus1 LINE L1 0 6567 6122 6 1309 1197 68 0 0 chr5 94971271 94971419 -57565840 + B1_Mus1 SINE Alu 1 148 0 6 1309 180 77 0 0 chr5 94971419 94971445 -57565814 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1309 357 211 0 13 chr5 94972642 94972719 -57564540 - Lx5 LINE L1 -121 6929 6854 6 1309 1292 328 49 46 chr5 94972719 94973388 -57563871 + RodERV21-int LTR ERV1 4118 4788 -203 6 1309 743 184 26 7 chr5 94973530 94973683 -57563576 - L1_Mur2 LINE L1 -694 5183 5028 6 1309 2326 215 117 2 chr5 94973686 94973856 -57563403 + Lx5 LINE L1 6443 6627 -423 6 1309 230 0 33 0 chr5 94973856 94973886 -57563373 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1309 2326 215 117 2 chr5 94973886 94974252 -57563007 + Lx5 LINE L1 6628 7040 -10 6 1309 320 307 7 21 chr5 94974295 94974435 -57562824 + Lx6 LINE L1 7211 7348 -112 6 1309 661 184 7 7 chr5 94974435 94974572 -57562687 + MTC-int LTR MaLR 909 1045 -213 6 1309 355 164 82 0 chr5 94975288 94975361 -57561898 - MTEb LTR MaLR 0 421 343 6 1309 198 0 0 0 chr5 94975451 94975473 -57561786 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1309 773 256 46 95 chr5 94975487 94975854 -57561405 + RMER5 LTR ERV1 186 534 0 6 1309 431 321 0 6 chr5 94976176 94976339 -57560920 - B3A SINE B2 -26 172 11 6 1309 30 27 0 0 chr5 94976348 94976385 -57560874 + AT_rich Low_complexity Low_complexity 1 37 0 6 1309 256 242 0 0 chr5 94976477 94976573 -57560686 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 1309 207 204 0 20 chr5 94976629 94976679 -57560580 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 6 1309 2639 189 12 41 chr5 94976681 94977248 -57560011 + RLTR31_Mur LTR ERVK 1 551 -2 6 1309 1867 212 34 38 chr5 94977249 94978115 -57559144 + RMER3D-int LTR ERVK 1 1382 -1460 6 1309 5069 207 80 55 chr5 94978173 94979646 -57557613 + RMER3D-int LTR ERVK 388 2841 -1 6 1309 568 154 7 117 chr5 94979647 94979801 -57557458 + RLTR31_Mur LTR ERVK 1 137 -416 6 1309 591 241 60 161 chr5 94979810 94980176 -57557083 + L1VL1 LINE L1 29 357 -6065 6 1309 397 308 19 6 chr5 94980257 94980414 -57556845 + L1Md_F LINE L1 578 736 -5783 6 1309 1448 217 19 0 chr5 94980393 94980711 -57556548 + L1Md_F LINE L1 628 951 -5568 6 1309 1936 206 152 18 chr5 94980707 94981207 -57556052 - L1VL2 LINE L1 -5674 661 95 6 1309 769 251 89 54 chr5 94981312 94981502 -57555757 - MTEb LTR MaLR -21 358 168 6 1309 2869 86 43 0 chr5 94981502 94981896 -57555363 - RLTR10A LTR ERVK 0 411 1 6 1309 769 251 89 54 chr5 94981896 94982021 -57555238 - MTEb LTR MaLR -212 167 32 6 1309 3450 41 30 11 chr5 94982049 94982398 -57554861 + MT2C_Mm LTR ERVL 1 363 -112 6 1309 4336 23 0 0 chr5 94982398 94982880 -57554379 - LTRIS_Mm LTR ERV1 0 482 1 6 1309 3450 41 30 11 chr5 94982880 94982996 -57554263 + MT2C_Mm LTR ERVL 364 475 0 6 1309 325 272 71 29 chr5 94983362 94983502 -57553757 + B1_Mm SINE Alu 2 147 0 6 1309 610 309 82 44 chr5 94983536 94983878 -57553381 + MTEa LTR MaLR 5 359 -20 6 1309 972 264 15 15 chr5 94984381 94984416 -57552843 + L1_Rod LINE L1 5586 5618 -229 6 1309 3202 82 0 2 chr5 94984416 94984833 -57552426 - L1_Mus1 LINE L1 0 6567 6152 6 1309 3565 66 7 0 chr5 94984833 94985287 -57551972 + L1Md_F2 LINE L1 5655 6111 -471 6 1309 548 246 54 11 chr5 94985307 94985492 -57551767 + RMER5 LTR ERV1 331 523 -11 6 1309 183 130 36 18 chr5 94985492 94985547 -57551712 + T-rich Low_complexity Low_complexity 1 56 0 6 1309 406 294 37 45 chr5 94985696 94985938 -57551321 - Lx9 LINE L1 -127 7517 7278 6 1309 2945 78 10 0 chr5 94986223 94986607 -57550652 + RLTR10 LTR ERVK 1 388 -2 6 1309 490 285 29 0 chr5 94986670 94986807 -57550452 - B1F SINE Alu -7 142 2 6 1309 366 292 115 25 chr5 94986897 94987097 -57550162 - ID_B1 SINE B4 -2 222 5 6 1309 183 167 0 0 chr5 94987274 94987316 -57549943 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1309 961 128 79 0 chr5 94987341 94987505 -57549754 + MTC LTR MaLR 12 188 -233 6 1309 2449 227 93 77 chr5 94987538 94988483 -57548776 + MT-int LTR MaLR 4 963 -135 6 1309 588 301 45 40 chr5 94988492 94988714 -57548545 - Lx6 LINE L1 -26 7434 7212 6 1309 11136 211 73 66 chr5 94988736 94990810 -57546449 - Lx5 LINE L1 -2 7048 4858 6 1309 188 0 74 0 chr5 94990810 94990837 -57546422 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1309 1183 36 0 0 chr5 94990837 94990974 -57546285 - B1_Mm SINE Alu -9 138 2 6 1309 11136 176 34 98 chr5 94990974 94993388 -57543871 - Lx5 LINE L1 -1020 4857 928 6 1309 267 125 0 0 chr5 94993386 94993426 -57543833 - Lx5 LINE L1 -5987 629 590 6 1309 633 223 0 0 chr5 94993427 94993548 -57543711 - L1Md_F LINE L1 -6191 328 208 6 1309 394 245 0 0 chr5 94993544 94993638 -57543621 - Lx5 LINE L1 -5987 629 536 6 1309 836 207 10 29 chr5 94993627 94993836 -57543423 - L1VL1 LINE L1 -6121 301 97 6 1309 225 125 0 0 chr5 94993811 94993843 -57543416 - L1Md_A LINE L1 -5973 751 720 6 1309 231 114 0 0 chr5 94993843 94993887 -57543372 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1309 6852 41 0 0 chr5 94994358 94995164 -57542095 - L1Md_T LINE L1 0 6582 5777 6 1309 283 252 20 10 chr5 94995165 94995265 -57541994 - L1VL1 LINE L1 -6321 101 1 6 1309 759 201 28 7 chr5 94995271 94995416 -57541843 - B1_Mur3 SINE Alu -1 148 1 6 1309 504 275 28 7 chr5 94995424 94995567 -57541692 + Lx7 LINE L1 7548 7693 -3 6 1309 441 255 14 32 chr5 94995585 94995779 -57541480 + B3 SINE B2 1 186 -9 6 1309 520 257 200 6 chr5 94995814 94995994 -57541265 - B3 SINE B2 -1 215 1 6 1309 2434 141 8 171 chr5 94996331 94996957 -57540302 + RMER2 LTR ERV1 44 567 0 6 1309 2173 127 0 0 chr5 94997689 94998029 -57539230 - MusHAL1 LINE L1 -636 2076 1737 6 1309 624 215 35 61 chr5 94998094 94998292 -57538967 - RMER13A LTR ERVK -570 290 98 6 1309 357 179 0 15 chr5 94998918 94998986 -57538273 - RMER17A-int LTR ERVK -518 1210 1144 6 1309 246 185 19 0 chr5 94999082 94999136 -57538123 + T-rich Low_complexity Low_complexity 2 56 0 6 1309 7154 45 0 0 chr5 94999150 95000000 -57537259 - L1Md_T LINE L1 0 6582 5733 6 1309 38158 38 3 8 chr5 95000000 95005379 -57531880 - L1Md_A LINE L1 -151 5732 383 1 1309 315 0 0 0 chr5 95005485 95005520 -57531739 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2 1309 320 283 30 30 chr5 95006118 95006249 -57531010 + MuRRS4-int LTR ERV1 1302 1432 -3631 3 1309 452 326 63 14 chr5 95006960 95007290 -57529969 + MuRRS4-int LTR ERV1 4019 4360 -3241 4 1309 1241 304 55 11 chr5 95007564 95008003 -57529256 + MuRRS4-int LTR ERV1 3556 3954 -1109 4 1309 3393 146 14 16 chr5 95008435 95008998 -57528261 + RMER2 LTR ERV1 1 562 -5 5 1309 2806 149 80 12 chr5 95009105 95009606 -57527653 - RLTR33 LTR ERVK -143 535 1 6 1309 269 210 148 0 chr5 95009843 95009924 -57527335 - RSINE1 SINE B4 -69 96 4 7 1309 716 193 19 58 chr5 95009982 95010136 -57527123 - B1_Mus1 SINE Alu 0 148 1 8 1309 292 351 58 22 chr5 95010170 95010307 -57526952 - B1_Mur3 SINE Alu -7 142 1 9 1309 315 364 8 8 chr5 95010316 95010446 -57526813 - B1_Mur1 SINE Alu -8 141 12 1 1309 492 275 84 28 chr5 95010478 95010620 -57526639 - B3 SINE B2 -7 209 60 1 1309 259 339 76 30 chr5 95010781 95010912 -57526347 - B1F SINE Alu 0 149 13 1 1309 519 289 97 17 chr5 95010815 95010991 -57526268 - ID_B1 SINE B4 -30 194 5 1 1309 235 295 15 145 chr5 95011245 95011376 -57525883 + PB1D7 SINE Alu 3 116 -4 1 1309 250 240 29 20 chr5 95012282 95012384 -57524875 + T-rich Low_complexity Low_complexity 2 104 0 1 1309 268 219 0 40 chr5 95012411 95012487 -57524772 - Lx LINE L1 0 6973 6901 1 1309 771 138 41 52 chr5 95012521 95012723 -57524536 - Lx LINE L1 -2 6652 6401 1 1309 2996 179 70 7 chr5 95012722 95013306 -57523953 - Lx2B LINE L1 -41 6959 6339 1 1309 189 0 0 0 chr5 95013308 95013329 -57523930 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1309 6840 110 9 3 chr5 95013352 95014548 -57522711 - L1_Mus1 LINE L1 0 6567 5363 1 1309 1172 84 0 14 chr5 95014548 95014693 -57522566 - B1_Mus1 SINE Alu -5 143 1 2 1309 542 215 12 0 chr5 95014695 95014821 -57522438 - Lx2B LINE L1 -644 6353 6223 1 1309 3866 146 26 32 chr5 95014849 95015590 -57521669 - RMER17A LTR ERVK -15 736 1 2 1309 7514 70 6 0 chr5 95015658 95016613 -57520646 - L1Md_F2 LINE L1 0 6582 5622 2 1309 9787 109 21 27 chr5 95016613 95018125 -57519134 + MMETn-int LTR ERVK 3342 4844 0 2 1309 1955 144 9 51 chr5 95018125 95018461 -57518798 + RLTRETN_Mm LTR ERVK 1 322 0 2 1309 31910 109 4 3 chr5 95018461 95023648 -57513611 - L1Md_F2 LINE L1 -262 5621 486 2 1309 6652 72 1 6 chr5 95025690 95026548 -57510711 + L1Md_F2 LINE L1 4732 5585 -298 2 163 8178 60 11 2 chr5 95026549 95027524 -57509735 + L1Md_F2 LINE L1 5587 6570 -12 2 1310 493 268 69 29 chr5 95028419 95028592 -57508667 + B3A SINE B2 6 185 -13 2 1310 595 261 0 23 chr5 95028911 95029044 -57508215 - B2_Mm2 SINE B2 -64 131 2 2 1310 189 0 0 0 chr5 95029187 95029208 -57508051 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1310 3851 246 12 23 chr5 95029997 95030913 -57506346 - Lx5 LINE L1 -1 7049 6144 2 1310 7819 244 76 87 chr5 95030934 95033984 -57503275 - L1_Mur2 LINE L1 -845 5032 2049 2 1310 492 62 0 0 chr5 95033984 95034048 -57503211 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1310 7819 226 103 69 chr5 95034048 95035076 -57502183 - L1_Mur2 LINE L1 -3829 2048 901 2 1310 455 227 65 75 chr5 95035322 95035522 -57501737 + MTC-int LTR MaLR 1055 1252 -6 3 1310 1535 235 92 3 chr5 95035527 95035906 -57501353 + MTC LTR MaLR 1 413 -8 3 1310 203 157 0 19 chr5 95035910 95035962 -57501297 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1310 387 356 68 0 chr5 95035971 95036089 -57501170 - B1_Mur1 SINE Alu -21 128 3 3 1310 620 206 74 13 chr5 95037371 95037530 -57499729 - RLTR21 LTR ERVK -136 1436 1281 3 1310 216 0 0 0 chr5 95037553 95037577 -57499682 + (TC)n Simple_repeat Simple_repeat 1 24 0 3 1310 252 0 0 0 chr5 95037577 95037604 -57499655 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1310 279 0 0 0 chr5 95037643 95037674 -57499585 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1310 984 232 79 40 chr5 95037682 95038010 -57499249 - RLTR21 LTR ERVK -426 1146 806 3 1310 28 29 0 0 chr5 95038049 95038084 -57499175 + AT_rich Low_complexity Low_complexity 1 35 0 3 1310 917 186 20 11 chr5 95038348 95038590 -57498669 - L1_Mur2 LINE L1 -2510 3367 3125 3 1310 641 171 0 15 chr5 95038590 95038721 -57498538 - Lx LINE L1 -2 6652 6524 3 1310 1250 62 7 0 chr5 95038971 95039116 -57498143 - B1_Mm SINE Alu 0 147 2 4 1310 221 365 0 13 chr5 95039797 95039872 -57497387 + ID4_ SINE ID 8 81 -2 4 1310 189 74 0 0 chr5 95042419 95042446 -57494813 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1310 1050 113 7 0 chr5 95042452 95042593 -57494666 - B1_Mus1 SINE Alu -5 143 2 4 1310 1467 58 6 0 chr5 95044473 95044646 -57492613 + B2_Mm1t SINE B2 1 174 -19 4 1310 218 170 43 0 chr5 95044655 95044702 -57492557 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 4 1310 272 330 0 74 chr5 95045689 95045797 -57491462 - PB1D7 SINE Alu -20 100 1 4 1310 499 311 83 0 chr5 95046365 95046558 -57490701 + B3 SINE B2 2 210 -6 4 1310 593 228 20 20 chr5 95046729 95046877 -57490382 + B1_Mus1 SINE Alu 1 148 0 4 1310 371 282 21 66 chr5 95046903 95047060 -57490199 + B1_Mm SINE Alu 3 149 -1 4 1310 287 269 122 32 chr5 95047140 95047263 -57489996 + RSINE1 SINE B4 3 136 -29 5 1310 948 99 12 50 chr5 95047756 95047916 -57489343 - L1_Mus3 LINE L1 -7 6631 6478 5 1310 1361 154 4 50 chr5 95047919 95048179 -57489080 + L1_Mus4 LINE L1 5887 6134 -502 5 1310 268 333 11 0 chr5 95049679 95049766 -57487493 - B3 SINE B2 -128 88 1 5 1310 629 237 0 0 chr5 95049797 95049928 -57487331 - Lx7 LINE L1 -16 7680 7550 5 1310 297 268 153 8 chr5 95049939 95050063 -57487196 + B1F2 SINE Alu 7 148 -1 5 1310 710 283 73 86 chr5 95050211 95050450 -57486809 - Lx7 LINE L1 -229 7467 7227 5 1310 1133 110 0 0 chr5 95050450 95050596 -57486663 + B1_Mus1 SINE Alu 3 148 0 5 1310 710 283 73 86 chr5 95050596 95050797 -57486462 - Lx7 LINE L1 -470 7226 7033 5 1310 981 228 9 5 chr5 95050820 95051036 -57486223 - L1_Mur2 LINE L1 -207 5670 5454 5 1310 315 0 0 0 chr5 95051886 95051921 -57485338 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1310 3480 210 65 1 chr5 95051989 95052732 -57484527 - Lx2B LINE L1 -1 6999 6210 5 1310 384 273 29 99 chr5 95056206 95056377 -57480882 + RMER10B LTR ERVL 228 386 -12 6 1310 483 307 42 6 chr5 95056354 95056521 -57480738 + B3A SINE B2 8 180 -18 6 1310 377 332 42 0 chr5 95056834 95056968 -57480291 - B2_Mm2 SINE B2 -67 149 1 6 1310 1674 11 21 0 chr5 95057197 95057386 -57479873 + B2_Mm1a SINE B2 1 193 0 6 1310 29 28 0 0 chr5 95057668 95057704 -57479555 + AT_rich Low_complexity Low_complexity 1 36 0 6 1310 5653 239 18 24 chr5 95058112 95058562 -57478697 - Lx5 LINE L1 0 7050 6622 6 1310 1272 220 158 57 chr5 95058562 95058967 -57478292 - RLTR41 LTR ERV1 0 446 1 6 1310 5653 227 27 16 chr5 95058967 95060272 -57476987 - Lx5 LINE L1 -429 6621 5283 6 1310 8285 28 0 0 chr5 95060285 95061415 -57475844 - L1Md_T LINE L1 0 6582 5453 6 1310 4453 84 3 9 chr5 95061412 95062072 -57475187 + L1Md_T LINE L1 4800 5455 -428 6 1310 541 197 36 0 chr5 95062069 95062206 -57475053 - Lx5 LINE L1 -688 5189 5048 6 1310 429 237 10 0 chr5 95062278 95062375 -57474884 + MTC-int LTR MaLR 909 1006 -252 6 1310 216 97 0 0 chr5 95062473 95062504 -57474755 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 6 1310 4713 124 8 0 chr5 95062513 95063223 -57474036 - L1_Mus3 LINE L1 -9 6629 5914 7 1310 411 151 114 0 chr5 95063757 95063849 -57473410 - MTC LTR MaLR 0 421 268 7 1310 339 234 52 0 chr5 95063875 95063952 -57473307 - Lx5 LINE L1 -170 6880 6800 7 1310 1851 183 70 13 chr5 95063978 95064361 -57472898 + RLTR9E LTR ERVK 5 409 0 7 1310 556 141 29 28 chr5 95064361 95064470 -57472789 - MTC LTR MaLR -113 308 209 7 1310 1637 229 24 13 chr5 95064445 95064822 -57472437 - MTC-int LTR MaLR -451 807 427 7 1310 1326 254 58 38 chr5 95064935 95065328 -57471931 + MTD LTR MaLR 5 405 -14 7 1310 312 200 86 0 chr5 95065358 95065428 -57471831 - B3 SINE B2 -135 81 6 7 1310 417 275 42 28 chr5 95065441 95065583 -57471676 - MTC LTR MaLR -228 146 3 7 1310 749 52 0 0 chr5 95066379 95066475 -57470784 + B1_Mm SINE Alu 52 147 0 7 1310 418 294 63 31 chr5 95066485 95066912 -57470347 + L1MA4 LINE L1 5476 5927 -373 7 1310 308 160 80 0 chr5 95067281 95067356 -57469903 - Lx9 LINE L1 -1 7643 7563 7 1310 501 32 0 0 chr5 95067362 95067425 -57469834 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1310 325 297 29 31 chr5 95067575 95067807 -57469452 + L1VL1 LINE L1 255 485 -5933 8 1310 358 276 16 8 chr5 95067830 95067958 -57469301 + L1_Mus1 LINE L1 675 803 -5813 8 1310 28002 123 12 14 chr5 95067964 95073836 -57463423 + L1_Mus1 LINE L1 723 6567 0 8 1310 556 234 145 15 chr5 95074326 95074526 -57462733 - URR1A DNA MER1_type 0 226 1 8 1310 1057 138 6 0 chr5 95074599 95074758 -57462501 + B2_Mm1a SINE B2 1 160 -33 8 1310 216 0 0 0 chr5 95074758 95074782 -57462477 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 8 1310 5921 112 28 2 chr5 95074793 95075747 -57461512 + L1_Mm LINE L1 4272 5250 -633 8 1310 1141 294 34 94 chr5 95076372 95076927 -57460332 + RMER5 LTR ERV1 8 529 -5 8 1310 263 246 0 14 chr5 95077117 95077191 -57460068 - Lx9 LINE L1 -173 7471 7399 8 1310 498 285 29 0 chr5 95077667 95077804 -57459455 - B1F SINE Alu -7 142 2 8 1310 292 304 19 29 chr5 95077905 95078010 -57459249 - ID_B1 SINE B4 -11 213 110 9 1310 459 35 0 0 chr5 95078276 95078333 -57458926 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1310 1155 144 6 0 chr5 95078337 95078518 -57458741 + MTC LTR MaLR 11 192 -229 9 1310 2691 224 90 75 chr5 95078548 95079293 -57457966 + MT-int LTR MaLR 4 801 -297 9 1310 4330 17 0 0 chr5 95079293 95079775 -57457484 + LTRIS_Mm LTR ERV1 1 482 0 9 1310 2691 224 90 75 chr5 95079775 95079984 -57457275 + MT-int LTR MaLR 802 972 -126 9 1310 265 294 31 61 chr5 95079993 95080156 -57457103 - Lx7 LINE L1 -23 7673 7516 9 1310 11176 217 73 55 chr5 95080223 95082075 -57455184 - Lx5 LINE L1 0 7050 5110 9 1310 800 94 12 0 chr5 95082075 95082208 -57455051 - B1_Mm SINE Alu 0 149 10 9 1310 11176 217 73 55 chr5 95082208 95082670 -57454589 - Lx5 LINE L1 0 5109 4624 9 1310 2751 77 0 3 chr5 95082670 95083034 -57454225 - L1_Mus1 LINE L1 0 6567 6205 9 1310 11176 206 51 110 chr5 95083034 95085031 -57452228 - Lx5 LINE L1 -1254 4632 2624 9 1310 1349 164 55 73 chr5 95085031 95085359 -57451900 - RLTRETN_Mm LTR ERVK 0 322 1 9 1310 11176 206 51 110 chr5 95085359 95086254 -57451005 - Lx5 LINE L1 -1254 2623 1722 9 1310 2071 168 60 9 chr5 95086304 95086754 -57450505 - L1_Mur2 LINE L1 -906 4971 4499 1 1310 3354 197 46 1 chr5 95087221 95087988 -57449271 - L1_Mur2 LINE L1 -1378 4499 3699 1 1310 226 234 30 30 chr5 95087988 95088054 -57449205 - RLTR9A LTR ERVK -296 72 7 1 1310 406 38 49 37 chr5 95088123 95088205 -57449054 + (TTTTTG)n Simple_repeat Simple_repeat 2 84 0 1 1310 399 277 44 33 chr5 95088595 95088778 -57448481 - RLTR6-int LTR ERV1 -207 7571 7387 1 1310 779 152 7 0 chr5 95088773 95088911 -57448348 - RMER16-int LTR ERVK -1068 4338 4200 1 1310 3655 148 44 39 chr5 95088911 95089656 -57447603 - RMER17D LTR ERVK 0 889 141 1 1310 1454 184 92 0 chr5 95089663 95089956 -57447303 - IAPEY3_LTR LTR ERVK -12 320 1 1 1310 1278 181 61 20 chr5 95089956 95090299 -57446960 - IAPEz-int LTR ERVK 0 6481 6125 1 1310 3694 105 29 25 chr5 95090316 95090582 -57446677 - IAPEY3-int LTR ERVK -342 7338 7071 1 1310 4208 36 0 0 chr5 95090582 95091078 -57446181 + L1Md_T LINE L1 6087 6582 0 1 1310 3694 105 29 25 chr5 95091078 95091405 -57445854 - IAPEY3-int LTR ERVK -610 7070 6743 1 1310 3053 102 7 4 chr5 95091395 95091848 -57445411 - IAPEY3-int LTR ERVK -1367 6214 5761 1 1310 3157 89 0 16 chr5 95091839 95092286 -57444973 - IAPEY3-int LTR ERVK -1939 5642 5203 1 1310 795 76 17 8 chr5 95092563 95092682 -57444577 - IAPEY3-int LTR ERVK -2932 4649 4530 1 1310 428 188 19 34 chr5 95092698 95092821 -57444438 - MMETn-int LTR ERVK -2380 2464 2357 1 1310 1880 144 111 7 chr5 95092830 95093415 -57443844 - ETnERV2-int LTR ERVK -3142 4264 3567 1 1310 577 219 0 0 chr5 95093441 95093560 -57443699 - ETnERV2-int LTR ERVK -4653 2753 2635 1 1310 291 267 0 55 chr5 95093572 95093663 -57443596 - ETnERV2-int LTR ERVK -4867 2539 2454 1 1310 280 310 88 0 chr5 95093676 95093789 -57443470 - RLTR19-int LTR ERVK -5077 1060 938 1 1310 289 241 140 33 chr5 95093775 95093925 -57443334 - RLTR19-int LTR ERVK -5448 689 524 1 1310 1493 181 96 40 chr5 95093934 95094309 -57442950 - RMER16-int LTR ERVK -4760 646 251 1 1310 335 144 0 103 chr5 95094420 95094536 -57442723 - MMERVK10C-int LTR ERVK -6629 952 849 1 1310 5139 71 12 15 chr5 95094517 95095249 -57442010 - IAPLTR4_I LTR ERVK -704 766 37 1 1310 1437 178 88 10 chr5 95095249 95095566 -57441693 - IAPEY3_LTR LTR ERVK -1 366 1 1 1310 384 75 0 0 chr5 95095566 95095619 -57441640 - RMER17D2 LTR ERVK -659 150 98 1 1310 21426 61 2 2 chr5 95095629 95099296 -57437963 - L1Md_F3 LINE L1 -8 6576 2909 1 1310 714 161 0 9 chr5 95099296 95099409 -57437850 - RMER17D2 LTR ERVK -697 112 1 1 1310 698 100 8 62 chr5 95099409 95099537 -57437722 - RMER16-int LTR ERVK -1207 4199 4079 1 1310 3729 136 51 98 chr5 95099537 95100225 -57437034 - RMER16-int LTR ERVK -3017 2389 1677 1 1310 865 109 0 149 chr5 95100225 95100386 -57436873 + B1_Mm SINE Alu 1 137 -10 1 1310 3729 136 51 98 chr5 95100386 95100562 -57436697 - RMER16-int LTR ERVK -3730 1676 1566 1 1310 278 291 15 30 chr5 95100615 95100746 -57436513 - ETnERV2-int LTR ERVK -3812 2355 2227 1 1310 528 242 28 131 chr5 95100855 95101107 -57436152 - ETnERV2-int LTR ERVK -4859 2547 2322 1 1310 270 152 0 0 chr5 95101191 95101250 -57436009 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1310 482 227 8 15 chr5 95101511 95101641 -57435618 - ETnERV2-int LTR ERVK -3822 1584 1456 1 1310 6865 88 6 1 chr5 95101644 95102935 -57434324 - L1Md_F2 LINE L1 0 6582 5282 1 1310 219 36 0 0 chr5 95102948 95102976 -57434283 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1310 240 162 0 0 chr5 95103337 95103374 -57433885 - RMER10A LTR ERVL -394 48 12 1 1310 952 238 94 7 chr5 95104457 95104766 -57432493 - L1_Mur2 LINE L1 -893 4984 4649 1 1310 1704 198 37 0 chr5 95104761 95105110 -57432149 - Lx2B LINE L1 -393 6607 6246 1 1310 253 317 53 80 chr5 95105207 95105320 -57431939 - PB1D7 SINE Alu -8 112 3 1 1310 1503 223 33 83 chr5 95105448 95105677 -57431582 + RMER16 LTR ERVK 1 320 -213 1 1310 2151 159 30 0 chr5 95105677 95106073 -57431186 - Lx LINE L1 -7 6647 6240 1 1310 1503 225 62 33 chr5 95106073 95106287 -57430972 + RMER16 LTR ERVK 321 533 0 1 1310 1119 244 101 11 chr5 95106638 95106986 -57430273 + Lx7 LINE L1 7010 7388 -308 1 1310 1784 237 26 7 chr5 95106969 95107386 -57429873 - Lx4A LINE L1 0 7058 6634 1 1310 325 262 0 54 chr5 95107381 95107530 -57429729 + Lx7 LINE L1 7371 7511 -185 1 1310 613 286 7 7 chr5 95107769 95107917 -57429342 - B1_Mus1 SINE Alu 0 148 1 1 1310 268 315 60 23 chr5 95107961 95108094 -57429165 - B1_Mur4 SINE Alu -12 138 1 1 1310 459 341 0 0 chr5 95108103 95108235 -57429024 - B1_Mur1 SINE Alu -8 141 10 1 1310 575 296 7 0 chr5 95108266 95108418 -57428841 - B3 SINE B2 -4 212 60 1 1310 260 345 80 15 chr5 95108589 95108789 -57428470 - ID_B1 SINE B4 -8 216 4 1 1310 258 237 64 118 chr5 95109036 95109146 -57428113 + PB1D7 SINE Alu 3 106 -14 1 1310 351 192 0 55 chr5 95109980 95110090 -57427169 + T-rich Low_complexity Low_complexity 2 105 0 1 1310 311 255 0 0 chr5 95110219 95110317 -57426942 + T-rich Low_complexity Low_complexity 1 98 0 1 1310 246 222 0 36 chr5 95110354 95110438 -57426821 - Lx3B LINE L1 -5 6968 6888 1 1310 1099 89 7 0 chr5 95110456 95110602 -57426657 - B1_Mus1 SINE Alu 0 148 2 1 1310 3558 206 43 3 chr5 95110612 95111376 -57425883 - Lx2B LINE L1 -3 6997 6203 1 1310 31 26 0 0 chr5 95112185 95112223 -57425036 + AT_rich Low_complexity Low_complexity 1 38 0 1 1310 289 298 8 42 chr5 95115644 95115763 -57421496 + RMER10B LTR ERVL 227 341 -57 1 1310 495 272 17 61 chr5 95116188 95116368 -57420891 - B2_Mm2 SINE B2 -22 173 2 1 1310 7764 86 3 0 chr5 95117168 95118192 -57419067 + L1Md_F2 LINE L1 4560 5586 -297 1 1310 7847 64 2 1 chr5 95118192 95119175 -57418084 + L1Md_F2 LINE L1 5587 6570 -12 1 1310 239 296 96 27 chr5 95119327 95119473 -57417786 - Lx5 LINE L1 -1 7049 6894 1 1310 269 291 21 147 chr5 95119838 95120076 -57417183 + RMER17C-int LTR ERVK 379 586 -2652 1 1310 651 301 45 117 chr5 95119953 95120679 -57416580 + RodERV21-int LTR ERV1 745 1418 -3573 1 1310 369 0 0 0 chr5 95120679 95120720 -57416539 + (TTA)n Simple_repeat Simple_repeat 1 41 0 1 1310 7654 71 1 9 chr5 95120720 95121985 -57415274 - L1Md_F2 LINE L1 -23 6559 5304 1 1310 2508 296 8 20 chr5 95121985 95122734 -57414525 + RodERV21-int LTR ERV1 1410 2149 -2842 1 1310 224 295 0 0 chr5 95123972 95124033 -57413226 + B3 SINE B2 8 68 -148 1 1310 12835 61 2 2 chr5 95124180 95125800 -57411459 + L1Md_F2 LINE L1 3967 5586 -297 1 1310 7976 46 12 14 chr5 95125801 95126798 -57410461 + L1Md_F2 LINE L1 5588 6582 0 1 1310 399 308 0 60 chr5 95127015 95127181 -57410078 - B2_Mm2 SINE B2 -22 173 18 1 1310 6149 236 16 25 chr5 95128140 95128583 -57408676 - Lx5 LINE L1 0 7050 6619 1 1310 1761 218 95 40 chr5 95128583 95129004 -57408255 - RLTR41 LTR ERV1 0 446 3 1 1310 6149 232 53 17 chr5 95129004 95130529 -57406730 - Lx5 LINE L1 -432 6618 5027 1 1310 1569 269 107 14 chr5 95130531 95131047 -57406212 + Lx5 LINE L1 6443 7006 -44 1 1310 3692 242 22 9 chr5 95131079 95132402 -57404857 - Lx5 LINE L1 -543 6507 5160 1 1310 1173 295 41 84 chr5 95132402 95132916 -57404343 + RodERV21-int LTR ERV1 2227 2718 -2273 1 1310 513 340 30 45 chr5 95133084 95133525 -57403734 + RodERV21-int LTR ERV1 3638 4071 -3020 1 1310 306 186 16 53 chr5 95135000 95135107 -57402152 + RodERV21-int LTR ERV1 4830 4949 -2657 1 1310 1086 355 43 59 chr5 95135593 95136457 -57400802 + RodERV21-int LTR ERV1 2869 3718 -1273 1 1310 239 227 15 29 chr5 95136957 95137025 -57400234 + ID4_ SINE ID 5 71 -12 1 1310 939 111 31 6 chr5 95137248 95137411 -57399848 - B2_Mm2 SINE B2 0 195 29 1 1310 1485 63 21 0 chr5 95137411 95137601 -57399658 - B2_Mm2 SINE B2 0 195 2 1 1310 356 0 0 22 chr5 95137635 95137680 -57399579 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1310 351 125 0 0 chr5 95137695 95137767 -57399492 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1310 225 167 0 0 chr5 95138159 95138195 -57399064 - RMER10A LTR ERVL -395 47 12 1 1310 336 284 0 0 chr5 95140023 95140111 -57397148 - B3 SINE B2 -128 88 1 1 1310 599 188 53 0 chr5 95140127 95140260 -57396999 - Lx7 LINE L1 -1 7695 7556 1 1310 345 258 117 0 chr5 95140277 95140397 -57396862 + B1_Mm SINE Alu 1 134 -13 1 1310 7025 107 7 10 chr5 95140460 95141827 -57395432 - L1_Mus1 LINE L1 -1 6566 5206 1 1310 1570 115 0 0 chr5 95141831 95142049 -57395210 + L1Md_F2 LINE L1 6082 6299 -283 1 1310 268 194 209 0 chr5 95142049 95142116 -57395143 + RLTR6_Mm LTR ERV1 1 81 -573 1 1310 1766 125 269 51 chr5 95142156 95142610 -57394649 + RLTR6_Mm LTR ERV1 37 589 -65 1 1310 66137 28 17 7 chr5 95142610 95150321 -57386938 + RLTR6-int LTR ERV1 1 7778 0 1 1310 243 182 227 0 chr5 95150321 95150387 -57386872 + RLTR6_Mm LTR ERV1 1 81 -573 1 1310 1727 124 272 51 chr5 95150427 95150876 -57386383 + RLTR6_Mm LTR ERV1 37 584 -70 1 1310 1649 112 27 70 chr5 95150876 95151174 -57386085 + L1Md_F2 LINE L1 6296 6580 -2 1 1310 708 215 109 11 chr5 95151181 95151355 -57385904 - Lx7 LINE L1 -484 7212 7022 1 1310 863 250 5 5 chr5 95151364 95151581 -57385678 - L1_Mur2 LINE L1 -207 5670 5454 1 1310 2174 112 221 45 chr5 95152184 95152668 -57384591 + RLTR6_Mm LTR ERV1 37 605 -49 1 163 68135 19 12 2 chr5 95152668 95160368 -57376891 + RLTR6-int LTR ERV1 1 7778 0 1 1311 2092 111 232 45 chr5 95160477 95160939 -57376320 + RLTR6_Mm LTR ERV1 37 584 -70 1 1311 2151 212 167 28 chr5 95161382 95162074 -57375185 - Lx2B LINE L1 -2 6998 6210 1 1311 224 295 0 0 chr5 95166476 95166537 -57370722 + B3 SINE B2 8 68 -148 1 1311 12209 55 0 2 chr5 95166684 95168307 -57368952 + L1Md_F2 LINE L1 3967 5585 -298 1 1311 8044 48 1 4 chr5 95168308 95169306 -57367953 + L1Md_F2 LINE L1 5587 6581 -1 1 1311 451 314 0 60 chr5 95169523 95169689 -57367570 - B2_Mm2 SINE B2 -22 173 18 1 1311 4978 241 45 16 chr5 95170649 95171041 -57366218 - Lx5 LINE L1 -4 7054 6606 1 1311 1690 224 98 41 chr5 95171041 95171460 -57365799 - RLTR41 LTR ERV1 0 446 4 1 1311 4978 232 42 8 chr5 95171460 95172968 -57364291 - Lx5 LINE L1 -445 6605 5027 1 1311 1400 278 103 10 chr5 95172970 95173486 -57363773 + Lx5 LINE L1 6443 7006 -44 1 1311 3386 234 23 28 chr5 95173518 95174969 -57362290 - Lx5 LINE L1 -543 6507 5044 1 1311 440 172 43 11 chr5 95175038 95175132 -57362127 + MTC-int LTR MaLR 910 1006 -252 1 1311 249 182 0 0 chr5 95175767 95175811 -57361448 - MTEb LTR MaLR 0 419 376 1 1311 928 126 0 0 chr5 95175813 95175948 -57361311 + B1_Mus1 SINE Alu 2 136 -12 1 1311 450 232 69 42 chr5 95176143 95176287 -57360972 + MTD LTR MaLR 272 419 0 1 1311 3918 145 67 13 chr5 95176781 95177320 -57359939 - RMER17D LTR ERVK 0 889 321 1 1311 858 20 0 0 chr5 95177320 95177420 -57359839 + (GGAGA)n Simple_repeat Simple_repeat 2 101 0 1 1311 3918 145 67 13 chr5 95177420 95177661 -57359598 - RMER17D LTR ERVK -569 320 68 1 1311 1493 112 0 8 chr5 95177672 95177907 -57359352 - L1Md_F2 LINE L1 0 6582 6350 1 1311 615 235 128 15 chr5 95178391 95178594 -57358665 - URR1A DNA MER1_type 0 226 1 1 1311 783 265 139 31 chr5 95178984 95179307 -57357952 - MTEb LTR MaLR -21 358 1 1 1311 405 239 49 35 chr5 95179678 95179821 -57357438 + B1_Mur3 SINE Alu 3 147 -2 1 1311 572 382 40 23 chr5 95179849 95180200 -57357059 + MTEa LTR MaLR 3 359 -20 1 1311 391 304 78 34 chr5 95180904 95181108 -57356151 + RMER5 LTR ERV1 13 225 -309 1 1311 456 258 47 78 chr5 95181269 95181462 -57355797 + RMER5 LTR ERV1 331 517 -17 1 1311 315 0 0 0 chr5 95181468 95181503 -57355756 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1311 580 285 25 35 chr5 95181803 95182003 -57355256 - B3A SINE B2 0 198 1 1 1311 36 23 0 0 chr5 95182004 95182047 -57355212 + AT_rich Low_complexity Low_complexity 1 43 0 1 1311 384 22 0 0 chr5 95182135 95182180 -57355079 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1311 351 0 0 0 chr5 95182180 95182218 -57355041 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1311 235 325 74 40 chr5 95182323 95182525 -57354734 - ID_B1 SINE B4 -11 213 5 2 1311 223 154 0 0 chr5 95182700 95182739 -57354520 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1311 1003 194 15 2 chr5 95182750 95182969 -57354290 + MTC LTR MaLR 6 222 -197 2 1311 2314 247 100 53 chr5 95182970 95183807 -57353452 + MT-int LTR MaLR 4 880 -218 2 1311 3638 101 16 10 chr5 95184396 95185006 -57352253 - MusHAL1 LINE L1 -632 2080 1467 2 1311 1335 164 0 0 chr5 95185030 95185255 -57352004 - L1VL2 LINE L1 -5934 401 177 2 1311 298 186 135 19 chr5 95185256 95185360 -57351899 + MT-int LTR MaLR 996 1111 -147 2 1311 545 302 44 49 chr5 95185365 95185591 -57351668 - Lx6 LINE L1 -28 7432 7208 2 1311 4331 247 98 22 chr5 95185610 95186349 -57350910 - Lx5 LINE L1 0 7050 6286 2 1311 1114 55 7 7 chr5 95186349 95186496 -57350763 + B1_Mm SINE Alu 1 147 0 2 1311 9884 207 52 34 chr5 95186496 95189415 -57347844 - Lx5 LINE L1 -765 6285 3284 2 1311 424 155 0 72 chr5 95189415 95189526 -57347733 - L1_Mus3 LINE L1 0 6638 6536 2 1311 9884 200 44 36 chr5 95189526 95189684 -57347575 - Lx5 LINE L1 -2594 3283 3129 2 1311 508 200 0 8 chr5 95189702 95189833 -57347426 - Lx LINE L1 -1 6653 6524 2 1311 295 338 52 8 chr5 95189898 95190032 -57347227 - ID_B1 SINE B4 -1 223 84 2 1311 33304 78 2 14 chr5 95190332 95196441 -57340818 - L1Md_F2 LINE L1 0 6582 556 2 1311 210 150 0 0 chr5 95197160 95197200 -57340059 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1311 347 331 99 20 chr5 95197596 95197747 -57339512 - B3A SINE B2 -11 187 25 2 1311 233 266 29 86 chr5 95199679 95199749 -57337510 - RLTR19A LTR ERVK -360 136 71 2 1311 362 57 19 0 chr5 95201727 95201780 -57335479 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1311 230 271 17 0 chr5 95201855 95201914 -57335345 + B1_Mur3 SINE Alu 85 144 -5 2 1311 659 175 0 0 chr5 95202319 95202439 -57334820 + L1_Mus4 LINE L1 6018 6137 -499 2 1311 281 322 11 0 chr5 95203939 95204026 -57333233 - B3 SINE B2 -128 88 1 2 1311 629 222 7 0 chr5 95204043 95204187 -57333072 - Lx7 LINE L1 -2 7694 7550 2 1311 289 268 153 8 chr5 95204198 95204322 -57332937 + B1F2 SINE Alu 7 148 -1 2 1311 810 29 10 0 chr5 95204716 95204820 -57332439 - L1Md_F3 LINE L1 -678 5906 5802 2 1311 2445 45 13 0 chr5 95204822 95205133 -57332126 + L1Md_F3 LINE L1 6256 6570 -14 2 1311 690 235 11 5 chr5 95205166 95205350 -57331909 - L1_Mur2 LINE L1 -240 5637 5453 2 1311 2903 208 20 2 chr5 95206271 95207002 -57330257 - Lx2B LINE L1 -16 6981 6211 2 1311 352 277 30 103 chr5 95211264 95211429 -57325830 + RMER10B LTR ERVL 234 386 -12 2 1311 469 319 42 6 chr5 95211406 95211573 -57325686 + B3A SINE B2 8 180 -18 2 1311 431 335 22 61 chr5 95211839 95212020 -57325239 - B2_Mm2 SINE B2 -21 174 1 2 1311 23 54 0 0 chr5 95212526 95212563 -57324696 + AT_rich Low_complexity Low_complexity 1 37 0 2 1311 5884 230 16 24 chr5 95212967 95213417 -57323842 - Lx5 LINE L1 0 7050 6622 2 1311 1628 204 104 52 chr5 95213417 95213841 -57323418 - RLTR41 LTR ERV1 0 446 1 2 1311 5884 233 18 19 chr5 95213841 95215408 -57321851 - Lx5 LINE L1 -429 6621 5027 2 1311 1563 273 88 6 chr5 95215428 95215918 -57321341 + Lx5 LINE L1 6477 7006 -44 2 1311 312 157 0 0 chr5 95215964 95216015 -57321244 - Lx5 LINE L1 -541 6517 6467 2 1311 5819 89 1 0 chr5 95216020 95216848 -57320411 + L1Md_F2 LINE L1 4758 5586 -297 2 1311 7585 75 1 0 chr5 95216849 95217842 -57319417 + L1Md_F2 LINE L1 5588 6581 -1 2 1311 3115 235 38 3 chr5 95217890 95219229 -57318030 - Lx5 LINE L1 -599 6451 5054 2 1311 400 240 10 0 chr5 95219308 95219404 -57317855 + MTC-int LTR MaLR 910 1006 -252 2 1311 261 83 0 0 chr5 95219502 95219538 -57317721 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 2 1311 4726 129 19 0 chr5 95219547 95220277 -57316982 - L1_Mus3 LINE L1 -9 6629 5886 2 1311 522 0 0 0 chr5 95220379 95220437 -57316822 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1311 347 147 118 13 chr5 95220776 95220852 -57316407 - MTC LTR MaLR 0 421 338 2 1311 358 212 50 0 chr5 95220891 95220971 -57316288 - Lx5 LINE L1 -167 6883 6800 2 1311 1239 155 94 20 chr5 95221010 95221254 -57316005 + RLTR9E LTR ERVK 6 267 -142 2 1311 580 29 0 0 chr5 95221254 95221324 -57315935 + L1Md_F3 LINE L1 5517 5586 -297 2 1311 7974 45 1 5 chr5 95221324 95222325 -57314934 + L1Md_F3 LINE L1 5587 6583 -1 2 1311 180 0 0 0 chr5 95222401 95222421 -57314838 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1311 571 231 23 8 chr5 95222421 95222552 -57314707 + RLTR9E LTR ERVK 277 409 0 2 1311 550 172 10 0 chr5 95222552 95222646 -57314613 - MTC LTR MaLR -103 318 224 2 1311 1647 226 35 5 chr5 95222636 95223006 -57314253 - MTC-int LTR MaLR -451 807 427 2 1311 1247 266 60 27 chr5 95223119 95223521 -57313738 + MTD LTR MaLR 5 419 0 2 1311 304 214 86 0 chr5 95223538 95223608 -57313651 - B3 SINE B2 -135 81 6 2 1311 394 286 28 28 chr5 95223621 95223765 -57313494 - MTC LTR MaLR -228 146 3 2 1311 19476 114 7 13 chr5 95223893 95226882 -57310377 + L1_Mus1 LINE L1 1671 4642 -1241 2 1311 3484 8 0 3 chr5 95226883 95227251 -57310008 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1311 56730 22 15 1 chr5 95227251 95233632 -57303627 - IAPEz-int LTR ERVK 0 6481 8 2 1311 3256 8 42 3 chr5 95233632 95233985 -57303274 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1311 8034 101 11 1 chr5 95233985 95235895 -57301364 + L1_Mus1 LINE L1 4638 6654 0 2 1311 844 205 128 15 chr5 95236418 95236621 -57300638 - URR1A DNA MER1_type 0 226 1 2 1311 5187 108 13 1 chr5 95236922 95237629 -57299630 - L1_Mus3 LINE L1 -8 6630 5916 2 1311 319 73 0 5 chr5 95237629 95237682 -57299577 - PB1D9 SINE Alu -94 55 4 2 1311 5088 111 7 3 chr5 95237682 95238483 -57298776 - L1VL1 LINE L1 -1934 1764 964 2 1311 1452 61 55 0 chr5 95238483 95238664 -57298595 - B2_Mm2 SINE B2 -3 192 2 2 1311 3611 144 165 9 chr5 95238664 95239263 -57297996 - L1VL1 LINE L1 -5459 963 246 2 1311 677 246 101 85 chr5 95239418 95239603 -57297656 - MTEb LTR MaLR -21 358 167 2 1311 2782 94 79 0 chr5 95239603 95239984 -57297275 - RLTR10A LTR ERVK 0 411 1 2 1311 677 255 130 50 chr5 95239984 95240127 -57297132 - MTEb LTR MaLR -213 166 2 2 1311 4181 53 0 0 chr5 95240135 95240610 -57296649 + MT2C_Mm LTR ERVL 1 475 0 2 1311 478 222 79 36 chr5 95240971 95241111 -57296148 + B1_Mus2 SINE Alu 2 147 0 2 1311 670 342 60 37 chr5 95241147 95241496 -57295763 + MTEa LTR MaLR 3 359 -20 2 1311 7714 69 3 9 chr5 95242046 95243084 -57294175 - L1_Mus1 LINE L1 -4 6563 5540 2 1311 635 321 32 92 chr5 95243224 95243594 -57293665 + RMER5 LTR ERV1 13 360 -174 2 1311 3177 95 7 0 chr5 95243595 95244004 -57293255 - L1_Mus1 LINE L1 0 6567 6156 2 1311 3744 55 0 0 chr5 95244007 95244465 -57292794 + L1Md_F2 LINE L1 5654 6111 -471 2 1311 559 240 54 11 chr5 95244485 95244670 -57292589 + RMER5 LTR ERV1 331 523 -11 2 1311 187 31 62 0 chr5 95244683 95244715 -57292544 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2 1311 390 317 19 19 chr5 95244931 95245137 -57292122 - Lx9 LINE L1 -161 7483 7278 2 1311 529 285 29 0 chr5 95245473 95245610 -57291649 - B1F SINE Alu -7 142 2 2 1311 275 319 93 10 chr5 95245712 95245905 -57291354 - ID_B1 SINE B4 -11 213 5 2 1311 294 115 0 0 chr5 95246082 95246134 -57291125 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1311 630 122 0 0 chr5 95246134 95246232 -57291027 + (GA)n Simple_repeat Simple_repeat 1 98 0 2 1311 971 146 79 0 chr5 95246241 95246405 -57290854 + MTC LTR MaLR 12 188 -233 2 1311 2470 234 102 71 chr5 95246438 95247369 -57289890 + MT-int LTR MaLR 4 963 -135 2 1311 551 271 93 42 chr5 95247376 95247592 -57289667 - Lx6 LINE L1 -26 7434 7208 2 1311 17779 204 75 14 chr5 95247613 95252344 -57284915 - Lx5 LINE L1 -2 7048 2055 2 1311 369 62 0 0 chr5 95252344 95252392 -57284867 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1311 17779 186 64 15 chr5 95252392 95252687 -57284572 - Lx5 LINE L1 -3823 2054 1723 2 1311 2832 202 35 198 chr5 95252739 95254176 -57283083 - L1_Mur2 LINE L1 -907 4970 3810 2 1311 933 117 70 0 chr5 95254176 95254304 -57282955 - B1_Mus2 SINE Alu -10 137 1 2 1311 2832 202 35 198 chr5 95254304 95254572 -57282687 - L1_Mur2 LINE L1 -2068 3809 3545 2 1311 522 233 224 81 chr5 95254572 95254894 -57282365 - RLTR9A LTR ERVK 0 368 1 2 1311 2832 202 35 198 chr5 95254894 95254962 -57282297 - L1_Mur2 LINE L1 -2333 3544 3485 2 1311 732 181 113 0 chr5 95254968 95255101 -57282158 - ORR1A2 LTR MaLR -68 259 112 2 1311 1760 210 39 2 chr5 95255105 95255511 -57281748 - L1_Mur2 LINE L1 -3940 1940 1520 2 1311 1970 237 28 2 chr5 95255676 95256108 -57281151 - RLTR21 LTR ERVK -1124 448 6 2 1311 1350 178 61 10 chr5 95256402 95256698 -57280561 - MYSERV6-int LTR ERVK -1250 7709 7399 2 1311 902 190 27 11 chr5 95256741 95256927 -57280332 - B2_Mm2 SINE B2 -5 190 2 2 1311 333 149 15 15 chr5 95256955 95257023 -57280236 - ORR1A4 LTR MaLR -8 321 254 2 1311 432 259 28 14 chr5 95257010 95257155 -57280104 - RLTR12B LTR ERVK -341 187 41 2 1311 1528 244 46 64 chr5 95257177 95257739 -57279520 - MYSERV6-int LTR ERVK -56 8903 8426 2 1311 447 19 0 0 chr5 95257740 95257792 -57279467 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1311 990 151 17 11 chr5 95257908 95258082 -57279177 - B2_Mm2 SINE B2 -20 175 1 2 1311 1247 181 53 8 chr5 95258082 95258344 -57278915 - L1_Mur2 LINE L1 -3864 2013 1740 2 1311 5912 126 50 21 chr5 95258333 95259071 -57278188 + L1VL2 LINE L1 38 784 -5551 2 1311 3102 57 0 0 chr5 95259071 95259443 -57277816 - L1Md_F3 LINE L1 -14 6570 6199 2 1311 5912 91 64 8 chr5 95259443 95259766 -57277493 + L1VL2 LINE L1 785 1127 -2488 2 1311 361 242 68 70 chr5 95259873 95260027 -57277232 - RLTR13D3 LTR ERVK 0 1114 981 2 1311 1521 54 0 21 chr5 95260476 95260664 -57276595 + B2_Mm1t SINE B2 2 185 -8 2 1311 504 0 0 0 chr5 95261081 95261137 -57276122 + (TTTC)n Simple_repeat Simple_repeat 3 58 0 2 1311 5853 138 55 4 chr5 95261137 95262372 -57274887 - Lx LINE L1 -16 6638 5314 2 1311 3917 55 4 6 chr5 95262389 95262861 -57274398 - L1Md_F2 LINE L1 -13 6569 6099 2 1311 7108 74 0 7 chr5 95262861 95264005 -57273254 + L1Md_F2 LINE L1 4951 6086 -498 2 1311 22141 98 25 10 chr5 95264009 95268643 -57268616 - Lx LINE L1 -586 5291 233 2 1311 333 262 39 39 chr5 95269879 95270006 -57267253 + RMER10B LTR ERVL 216 342 -56 2 1311 329 347 23 65 chr5 95270031 95270247 -57267012 + B3 SINE B2 6 212 -4 2 1311 807 197 42 65 chr5 95270532 95270749 -57266510 + RMER3D-int LTR ERVK 1998 2209 -633 2 1311 528 255 36 68 chr5 95270814 95270969 -57266290 - Lx7 LINE L1 0 7696 7543 2 1311 503 237 114 0 chr5 95270969 95271100 -57266159 + B1_Mus2 SINE Alu 1 146 -1 2 1311 528 255 36 68 chr5 95271100 95271163 -57266096 - Lx7 LINE L1 -154 7542 7485 2 1311 318 206 0 88 chr5 95271163 95271182 -57266077 + B4 SINE B4 72 144 -148 2 1311 393 119 0 33 chr5 95271182 95271243 -57266016 + PB1D9 SINE Alu 1 59 -61 2 1311 234 0 0 158 chr5 95271244 95271358 -57265901 + (CAGAG)n Simple_repeat Simple_repeat 5 100 0 3 1311 743 95 0 9 chr5 95271361 95271467 -57265792 + B1_Mus2 SINE Alu 42 146 -1 3 1311 948 288 29 93 chr5 95271467 95271953 -57265306 - Lx7 LINE L1 -206 7490 7036 2 1311 7575 226 41 21 chr5 95271976 95274008 -57263251 - L1_Mur2 LINE L1 -207 5670 3598 3 1311 399 174 0 0 chr5 95274008 95274094 -57263165 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 3 1311 6376 128 15 37 chr5 95274340 95275296 -57261963 - L1_Mus3 LINE L1 -7 6631 5686 3 1311 1343 92 71 5 chr5 95275296 95275493 -57261766 + L1Md_F2 LINE L1 6368 6577 -5 3 1311 6376 161 17 43 chr5 95275493 95276080 -57261179 - L1_Mus3 LINE L1 -198 5685 5099 3 1311 239 71 24 0 chr5 95276095 95276137 -57261122 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 3 1311 4628 22 0 0 chr5 95276146 95276639 -57260620 + MT2_Mm LTR ERVL 1 493 0 3 1311 48650 12 0 0 chr5 95276639 95281998 -57255261 + MERVL-int LTR ERVL 1 5360 -125 3 1311 387 167 46 35 chr5 95281998 95282085 -57255174 + ORR1A3-int LTR MaLR 553 640 -1323 3 1311 311 26 0 0 chr5 95282085 95282123 -57255136 + MERVL-int LTR ERVL 5448 5485 0 3 1311 4628 22 0 0 chr5 95282123 95282616 -57254643 + MT2_Mm LTR ERVL 1 493 0 3 1311 1104 76 0 0 chr5 95282616 95282747 -57254512 - B1_Mus2 SINE Alu -15 132 2 3 1311 7480 158 42 84 chr5 95282748 95283584 -57253675 - L1_Mus3 LINE L1 -768 5115 4272 3 1311 403 167 0 35 chr5 95283584 95283671 -57253588 - B2_Mm2 SINE B2 -17 178 95 3 1311 7480 158 42 84 chr5 95283671 95284411 -57252848 - L1_Mus3 LINE L1 -768 4271 3523 3 1311 1447 112 9 0 chr5 95284406 95284667 -57252592 - L1VL1 LINE L1 -2544 1154 892 3 1311 270 0 0 0 chr5 95284675 95284705 -57252554 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 3 1311 730 123 9 0 chr5 95284705 95284819 -57252440 - B1_Mm SINE Alu 0 147 33 3 1311 1166 78 114 0 chr5 95284839 95285005 -57252254 - B2_Mm1a SINE B2 -7 186 2 3 1311 259 209 90 0 chr5 95285005 95285072 -57252187 - L1VL2 LINE L1 -5524 811 739 3 1311 328 283 29 157 chr5 95285043 95285215 -57252044 + L1VL1 LINE L1 208 357 -6065 3 1311 246 250 93 10 chr5 95285272 95285369 -57251890 + L1Md_F LINE L1 644 748 -5868 3 1311 2042 191 33 93 chr5 95285375 95285921 -57251338 + L1Md_F LINE L1 654 1207 -5409 3 1311 192 97 0 0 chr5 95285921 95285952 -57251307 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1311 27817 119 11 7 chr5 95285952 95288974 -57248285 + L1Md_F LINE L1 1174 4206 -1677 3 1311 420 20 0 0 chr5 95288974 95289023 -57248236 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 163 27817 118 11 5 chr5 95289023 95290314 -57246945 + L1Md_F LINE L1 4207 5498 -385 3 1312 1075 123 7 0 chr5 95290314 95290460 -57246799 + B1_Mus2 SINE Alu 1 147 0 3 1312 1222 50 0 21 chr5 95290464 95290607 -57246652 + B1_Mm SINE Alu 1 140 -7 3 1312 272 256 138 56 chr5 95290612 95290699 -57246560 - RMER17A2 LTR ERVK -490 416 321 3 1312 211 28 56 0 chr5 95290699 95290735 -57246524 + (CAA)n Simple_repeat Simple_repeat 2 39 0 3 1312 1013 102 73 0 chr5 95290736 95290873 -57246386 + B1_Mus2 SINE Alu 1 147 0 3 1312 272 256 138 56 chr5 95290873 95291015 -57246244 - RMER17A2 LTR ERVK -586 320 166 3 1312 7204 69 8 35 chr5 95291015 95291848 -57245411 + L1_Mus1 LINE L1 5612 6423 -144 3 1312 1197 68 7 0 chr5 95291848 95291994 -57245265 - B1_Mus2 SINE Alu 0 147 1 3 1312 7204 69 8 35 chr5 95291994 95292142 -57245117 + L1_Mus1 LINE L1 6424 6567 0 3 1312 214 288 68 0 chr5 95292334 95292407 -57244852 - PB1D7 SINE Alu -2 118 41 3 1312 221 167 0 0 chr5 95292499 95292535 -57244724 + B3 SINE B2 2 37 -179 3 1312 322 299 0 0 chr5 95292551 95292638 -57244621 - B3 SINE B2 -129 87 1 3 1312 1560 249 25 117 chr5 95292639 95292808 -57244451 - Lx7 LINE L1 -1 7695 7547 3 1312 440 197 171 16 chr5 95292808 95292937 -57244322 + B1F2 SINE Alu 1 149 0 3 1312 1560 244 23 126 chr5 95292937 95293067 -57244192 - Lx7 LINE L1 -150 7546 7446 3 1312 305 24 0 23 chr5 95293067 95293110 -57244149 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 3 1312 1560 244 23 126 chr5 95293110 95293552 -57243707 - Lx7 LINE L1 -251 7445 7043 3 1312 3849 231 12 34 chr5 95293563 95294233 -57243026 - L1_Mur2 LINE L1 -204 5673 5019 3 1312 2870 131 38 40 chr5 95294233 95294709 -57242550 + MT2C_Mm LTR ERVL 1 475 0 3 1312 3849 231 12 34 chr5 95294709 95295086 -57242173 - L1_Mur2 LINE L1 -859 5018 4649 3 1312 1907 176 16 53 chr5 95295081 95295353 -57241906 - Lx2B LINE L1 -393 6607 6338 3 1312 990 161 0 0 chr5 95295353 95295496 -57241763 + B1_Mus1 SINE Alu 1 143 -5 3 1312 1907 176 16 53 chr5 95295496 95295601 -57241658 - Lx2B LINE L1 -663 6337 6244 3 1312 245 369 8 59 chr5 95295696 95295814 -57241445 - PB1D7 SINE Alu -8 112 1 3 1312 1455 232 76 17 chr5 95295963 95296164 -57241095 + RMER16 LTR ERVK 103 326 -207 3 1312 2217 164 56 2 chr5 95296164 95296560 -57240699 - Lx LINE L1 -7 6647 6231 3 1312 1455 232 76 17 chr5 95296560 95296765 -57240494 + RMER16 LTR ERVK 327 532 -1 3 1312 228 35 0 0 chr5 95297371 95297400 -57239859 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1312 1202 268 114 40 chr5 95297400 95297828 -57239431 + Lx7 LINE L1 6902 7361 -335 3 1312 1902 241 14 12 chr5 95297861 95298285 -57238974 - Lx4A LINE L1 0 7058 6634 3 1312 417 227 12 72 chr5 95298265 95298431 -57238828 + Lx7 LINE L1 7356 7511 -185 3 1312 219 291 93 37 chr5 95298492 95298599 -57238660 - RSINE1 SINE B4 -35 130 18 3 1312 561 238 8 8 chr5 95298672 95298799 -57238460 - B1_Mm SINE Alu 0 147 21 3 1312 469 232 53 60 chr5 95298843 95298994 -57238265 - B1_Mur4 SINE Alu 0 150 1 3 1312 412 368 0 0 chr5 95299003 95299139 -57238120 - B1_Mur1 SINE Alu -8 141 6 3 1312 1021 109 0 35 chr5 95299168 95299310 -57237949 + B1_Mus1 SINE Alu 1 137 -11 3 1312 297 0 0 0 chr5 95299310 95299343 -57237916 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1312 584 305 0 0 chr5 95299347 95299498 -57237761 - B3 SINE B2 -5 211 61 3 1312 250 342 58 75 chr5 95299688 95299808 -57237451 - B1F SINE Alu -28 121 4 3 1312 313 263 9 92 chr5 95300132 95300241 -57237018 + PB1D7 SINE Alu 3 102 -18 3 1312 223 244 13 0 chr5 95301163 95301192 -57236067 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 1312 201 39 0 0 chr5 95301192 95301218 -57236041 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1312 223 244 13 0 chr5 95301218 95301266 -57235993 + (TTTG)n Simple_repeat Simple_repeat 3 51 0 3 1312 301 197 61 0 chr5 95301296 95301362 -57235897 - Lx3B LINE L1 -6 6967 6898 3 1312 3298 207 78 4 chr5 95301376 95302109 -57235150 - Lx2B LINE L1 -11 6989 6203 3 1312 3445 87 47 15 chr5 95302118 95302585 -57234674 + RLTR45 LTR ERVK 1 482 0 3 1312 243 203 0 0 chr5 95303411 95303485 -57233774 + (TAA)n Simple_repeat Simple_repeat 1 74 0 3 1312 1142 91 0 0 chr5 95303610 95303753 -57233506 + B1_Mus2 SINE Alu 5 147 0 3 1312 189 0 0 0 chr5 95305001 95305022 -57232237 + (CTTG)n Simple_repeat Simple_repeat 2 22 0 3 1312 288 0 0 0 chr5 95305020 95305052 -57232207 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1312 717 161 17 0 chr5 95305052 95305170 -57232089 - PB1D9 SINE Alu 0 120 1 3 1312 332 274 24 24 chr5 95307208 95307335 -57229924 + RMER10B LTR ERVL 216 342 -56 3 1312 7219 58 5 0 chr5 95307369 95308297 -57228962 + L1_Mm LINE L1 2424 3356 -2527 3 1312 456 323 30 6 chr5 95308306 95308471 -57228788 + B3A SINE B2 8 176 -22 3 1312 29 0 0 0 chr5 95308508 95308537 -57228722 + AT_rich Low_complexity Low_complexity 1 29 0 3 1312 845 199 51 151 chr5 95308606 95308956 -57228303 - RLTRETN_Mm LTR ERVK 0 322 8 3 1312 632 225 5 80 chr5 95309113 95309301 -57227958 - B2_Mm2 SINE B2 -21 174 1 3 1312 3682 60 23 2 chr5 95309435 95309872 -57227387 - L1_Mus1 LINE L1 0 6567 6122 3 1312 209 289 188 40 chr5 95310016 95310117 -57227142 + L2b LINE L2 3238 3353 -22 3 1312 333 102 0 0 chr5 95310296 95310345 -57226914 + B1_Mus2 SINE Alu 99 147 0 3 1312 246 81 0 0 chr5 95310345 95310382 -57226877 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1312 225 218 93 65 chr5 95311499 95311607 -57225652 + MURVY-LTR LTR ERV1 351 461 -58 3 1312 467 184 7 13 chr5 95311624 95311726 -57225533 - Lx5 LINE L1 -121 6929 6774 3 1312 1371 329 46 45 chr5 95311728 95312396 -57224863 + RodERV21-int LTR ERV1 4120 4788 -203 3 1312 709 197 26 7 chr5 95312538 95312691 -57224568 - L1_Mur2 LINE L1 -694 5183 5028 3 1312 2325 218 115 2 chr5 95312694 95312865 -57224394 + Lx5 LINE L1 6443 6627 -423 3 1312 379 0 39 0 chr5 95312865 95312916 -57224343 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1312 2325 218 115 2 chr5 95312916 95313282 -57223977 + Lx5 LINE L1 6628 7040 -10 3 1312 336 307 7 21 chr5 95313325 95313465 -57223794 + Lx6 LINE L1 7211 7348 -112 3 1312 716 176 7 7 chr5 95313465 95313602 -57223657 + MTC-int LTR MaLR 909 1045 -213 3 1312 378 164 82 0 chr5 95314316 95314389 -57222870 - MTC LTR MaLR 0 421 343 3 1312 868 256 46 95 chr5 95314508 95314875 -57222384 + RMER5 LTR ERV1 186 534 0 3 1312 485 339 0 6 chr5 95315197 95315369 -57221890 - B3A SINE B2 -26 172 2 3 1312 30 27 0 0 chr5 95315369 95315406 -57221853 + AT_rich Low_complexity Low_complexity 1 37 0 3 1312 270 152 0 0 chr5 95315504 95315563 -57221696 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1312 207 204 0 20 chr5 95315662 95315712 -57221547 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 3 1312 2808 191 12 41 chr5 95315714 95316281 -57220978 + RLTR31_Mur LTR ERVK 1 551 -2 3 1312 1825 215 34 38 chr5 95316282 95317148 -57220111 + RMER3D-int LTR ERVK 1 1382 -1460 3 1312 5159 208 83 51 chr5 95317206 95318679 -57218580 + RMER3D-int LTR ERVK 388 2841 -1 3 1312 615 154 7 117 chr5 95318680 95318834 -57218425 + RLTR31_Mur LTR ERVK 1 137 -416 3 1312 552 244 60 161 chr5 95318843 95319209 -57218050 + L1VL1 LINE L1 29 357 -6065 3 1312 396 301 19 6 chr5 95319290 95319447 -57217812 + L1Md_F LINE L1 578 736 -5783 3 1312 1469 214 19 0 chr5 95319426 95319744 -57217515 + L1Md_F LINE L1 628 951 -5568 3 1312 1951 196 154 20 chr5 95319740 95320240 -57217019 - L1VL2 LINE L1 -5674 661 95 3 1312 883 239 116 54 chr5 95320345 95320535 -57216724 - MTEb LTR MaLR -21 358 163 3 1312 3009 86 43 0 chr5 95320535 95320929 -57216330 - RLTR10A LTR ERVK 0 411 1 3 1312 883 239 116 54 chr5 95320929 95321074 -57216185 - MTEb LTR MaLR -217 162 2 3 1312 3643 41 30 11 chr5 95321082 95321431 -57215828 + MT2C_Mm LTR ERVL 1 363 -112 3 1312 4568 15 0 4 chr5 95321431 95321915 -57215344 - LTRIS_Mm LTR ERV1 0 482 1 3 1312 3643 41 30 11 chr5 95321915 95322031 -57215228 + MT2C_Mm LTR ERVL 364 475 0 3 1312 375 272 71 29 chr5 95322397 95322537 -57214722 + B1_Mm SINE Alu 2 147 0 3 1312 711 309 82 44 chr5 95322571 95322913 -57214346 + MTEa LTR MaLR 5 359 -20 3 1312 975 239 35 16 chr5 95323416 95323451 -57213808 + L1_Rod LINE L1 5586 5618 -229 3 1312 3373 82 0 2 chr5 95323451 95323868 -57213391 - L1_Mus1 LINE L1 0 6567 6152 3 1312 3615 64 7 0 chr5 95323868 95324322 -57212937 + L1Md_F2 LINE L1 5655 6111 -471 4 1312 597 246 54 11 chr5 95324342 95324527 -57212732 + RMER5 LTR ERV1 331 523 -11 4 1312 183 130 36 18 chr5 95324527 95324582 -57212677 + T-rich Low_complexity Low_complexity 1 56 0 4 1312 433 306 33 41 chr5 95324731 95324973 -57212286 - Lx9 LINE L1 -127 7517 7278 4 1312 3100 75 10 0 chr5 95325258 95325642 -57211617 + RLTR10 LTR ERVK 1 388 -2 4 1312 542 285 29 0 chr5 95325704 95325841 -57211418 - B1F SINE Alu -7 142 2 4 1312 433 287 115 25 chr5 95325931 95326131 -57211128 - ID_B1 SINE B4 -2 222 5 4 1312 183 167 0 0 chr5 95326308 95326350 -57210909 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1312 1026 128 79 0 chr5 95326375 95326539 -57210720 + MTC LTR MaLR 12 188 -233 4 1312 2744 226 93 77 chr5 95326572 95327517 -57209742 + MT-int LTR MaLR 4 963 -135 4 1312 586 301 45 40 chr5 95327526 95327748 -57209511 - Lx6 LINE L1 -26 7434 7212 4 1312 11572 212 73 61 chr5 95327770 95329843 -57207416 - Lx5 LINE L1 -2 7048 4858 4 1312 188 0 74 0 chr5 95329843 95329870 -57207389 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1312 1245 36 0 0 chr5 95329870 95330007 -57207252 - B1_Mm SINE Alu -9 138 2 4 1312 11572 176 34 90 chr5 95330007 95332390 -57204869 - Lx5 LINE L1 -1020 4857 928 4 1312 263 125 0 0 chr5 95332388 95332428 -57204831 - Lx5 LINE L1 -5987 629 590 4 1312 649 215 0 0 chr5 95332429 95332550 -57204709 - L1Md_F LINE L1 -6191 328 208 4 1312 387 245 0 0 chr5 95332546 95332640 -57204619 - Lx5 LINE L1 -5987 629 536 4 1312 805 212 10 29 chr5 95332629 95332838 -57204421 - L1VL1 LINE L1 -6121 301 97 4 1312 231 114 0 0 chr5 95332843 95332887 -57204372 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1312 21 0 0 0 chr5 95333324 95333345 -57203914 + AT_rich Low_complexity Low_complexity 1 21 0 4 1312 7149 42 0 0 chr5 95333359 95334165 -57203094 - L1Md_T LINE L1 0 6582 5777 4 1312 276 252 20 10 chr5 95334166 95334266 -57202993 - L1VL1 LINE L1 -6321 101 1 4 1312 798 208 28 7 chr5 95334272 95334417 -57202842 - B1_Mur3 SINE Alu -1 148 1 4 1312 509 275 28 7 chr5 95334425 95334568 -57202691 + Lx7 LINE L1 7548 7693 -3 4 1312 482 255 14 32 chr5 95334586 95334780 -57202479 + B3 SINE B2 1 186 -9 4 1312 583 257 200 6 chr5 95334815 95334995 -57202264 - B3 SINE B2 -1 215 1 4 1312 2657 137 8 171 chr5 95335332 95335958 -57201301 + RMER2 LTR ERV1 44 567 0 4 1312 2112 147 0 3 chr5 95336690 95337059 -57200200 - MusHAL1 LINE L1 -636 2076 1709 4 1312 693 215 35 61 chr5 95337096 95337294 -57199965 - RMER13A LTR ERVK -570 290 98 4 1312 356 179 0 15 chr5 95337921 95337989 -57199270 - RMER17A-int LTR ERVK -518 1210 1144 4 1312 221 204 19 0 chr5 95338085 95338139 -57199120 + T-rich Low_complexity Low_complexity 2 56 0 4 1312 39468 38 3 7 chr5 95338153 95344382 -57192877 - L1Md_T LINE L1 0 6582 383 4 1312 315 0 0 0 chr5 95344488 95344523 -57192736 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 4 1312 320 283 30 30 chr5 95345121 95345252 -57192007 + MuRRS4-int LTR ERV1 1302 1432 -3631 4 1312 475 323 63 14 chr5 95345962 95346292 -57190967 + MuRRS4-int LTR ERV1 4019 4360 -3241 4 1312 1241 304 55 11 chr5 95346566 95347005 -57190254 + MuRRS4-int LTR ERV1 3556 3954 -1109 4 1312 3380 148 14 16 chr5 95347437 95348000 -57189259 + RMER2 LTR ERV1 1 562 -5 4 1312 2807 149 80 12 chr5 95348107 95348608 -57188651 - RLTR33 LTR ERVK -143 535 1 4 1312 269 210 148 0 chr5 95348845 95348926 -57188333 - RSINE1 SINE B4 -69 96 4 4 1312 716 193 19 58 chr5 95348984 95349138 -57188121 - B1_Mus1 SINE Alu 0 148 1 4 1312 292 351 58 22 chr5 95349172 95349309 -57187950 - B1_Mur3 SINE Alu -7 142 1 4 1312 334 377 0 0 chr5 95349318 95349448 -57187811 - B1_Mur1 SINE Alu -8 141 12 4 1312 492 275 84 28 chr5 95349480 95349622 -57187637 - B3 SINE B2 -7 209 60 4 1312 259 339 76 30 chr5 95349783 95349914 -57187345 - B1F SINE Alu 0 149 13 4 1312 519 289 97 17 chr5 95349817 95349993 -57187266 - ID_B1 SINE B4 -30 194 5 4 1312 235 295 15 145 chr5 95350247 95350378 -57186881 + PB1D7 SINE Alu 3 116 -4 4 1312 245 197 0 50 chr5 95351282 95351389 -57185870 + (TTTG)n Simple_repeat Simple_repeat 1 101 0 4 1312 268 219 0 40 chr5 95351411 95351487 -57185772 - Lx LINE L1 0 6973 6901 4 1312 771 138 41 52 chr5 95351521 95351723 -57185536 - Lx LINE L1 -2 6652 6401 4 1312 2996 179 70 7 chr5 95351722 95352306 -57184953 - Lx2B LINE L1 -41 6959 6339 4 1312 189 0 0 0 chr5 95352308 95352329 -57184930 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1312 6862 109 9 3 chr5 95352352 95353548 -57183711 - L1_Mus1 LINE L1 0 6567 5363 4 1312 1172 84 0 14 chr5 95353548 95353693 -57183566 - B1_Mus1 SINE Alu -5 143 1 4 1312 542 215 12 0 chr5 95353695 95353821 -57183438 - Lx2B LINE L1 -644 6353 6223 4 1312 3851 151 25 32 chr5 95353838 95354590 -57182669 - RMER17A LTR ERVK -4 747 1 4 1312 7502 70 6 0 chr5 95354658 95355613 -57181646 - L1Md_F2 LINE L1 0 6582 5622 4 1312 9741 111 21 28 chr5 95355613 95357126 -57180133 + MMETn-int LTR ERVK 3342 4844 0 4 1312 1950 144 9 51 chr5 95357126 95357462 -57179797 + RLTRETN_Mm LTR ERVK 1 322 0 4 1312 31913 110 4 3 chr5 95357462 95362650 -57174609 - L1Md_F2 LINE L1 -262 5621 486 4 1312 180 0 0 0 chr5 95364278 95364298 -57172961 + (TTG)n Simple_repeat Simple_repeat 1 20 0 4 1312 6679 70 1 6 chr5 95364692 95365550 -57171709 + L1Md_F2 LINE L1 4732 5585 -298 4 1312 8192 59 11 2 chr5 95365551 95366526 -57170733 + L1Md_F2 LINE L1 5587 6570 -12 4 1312 493 268 69 29 chr5 95367421 95367594 -57169665 + B3A SINE B2 6 185 -13 4 1312 595 261 0 23 chr5 95367913 95368046 -57169213 - B2_Mm2 SINE B2 -64 131 2 4 1312 189 0 0 0 chr5 95368189 95368210 -57169049 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1312 3851 246 12 23 chr5 95368999 95369915 -57167344 - Lx5 LINE L1 -1 7049 6144 4 1312 7779 244 76 87 chr5 95369936 95372987 -57164272 - L1_Mur2 LINE L1 -845 5032 2049 4 1312 516 32 0 0 chr5 95372987 95373049 -57164210 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1312 7779 226 103 67 chr5 95373049 95374075 -57163184 - L1_Mur2 LINE L1 -3829 2048 901 4 1312 455 227 65 75 chr5 95374321 95374521 -57162738 + MTC-int LTR MaLR 1055 1252 -6 4 1312 1535 235 92 3 chr5 95374526 95374905 -57162354 + MTC LTR MaLR 1 413 -8 4 1312 203 157 0 19 chr5 95374909 95374961 -57162298 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1312 387 356 68 0 chr5 95374970 95375088 -57162171 - B1_Mur1 SINE Alu -21 128 3 4 1312 620 206 74 13 chr5 95376369 95376528 -57160731 - RLTR21 LTR ERVK -136 1436 1281 4 1312 180 0 0 0 chr5 95376551 95376571 -57160688 + (TC)n Simple_repeat Simple_repeat 1 20 0 4 1312 180 0 0 0 chr5 95376571 95376590 -57160669 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1312 426 20 0 0 chr5 95376627 95376678 -57160581 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1312 976 235 79 40 chr5 95376686 95377014 -57160245 - RLTR21 LTR ERVK -426 1146 806 4 1312 28 29 0 0 chr5 95377053 95377088 -57160171 + AT_rich Low_complexity Low_complexity 1 35 0 4 1312 917 186 20 11 chr5 95377352 95377594 -57159665 - L1_Mur2 LINE L1 -2510 3367 3125 4 1312 647 169 0 15 chr5 95377594 95377726 -57159533 - Lx LINE L1 -1 6653 6524 4 1312 1237 69 7 0 chr5 95377976 95378121 -57159138 - B1_Mm SINE Alu 0 147 2 4 1312 221 365 0 13 chr5 95378802 95378877 -57158382 + ID4_ SINE ID 8 81 -2 4 1312 189 74 0 0 chr5 95381424 95381451 -57155808 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1312 1019 121 7 0 chr5 95381457 95381598 -57155661 - B1_Mus1 SINE Alu -5 143 2 4 1312 1481 63 0 0 chr5 95383482 95383656 -57153603 + B2_Mm1t SINE B2 1 174 -19 4 1312 218 170 43 0 chr5 95383664 95383711 -57153548 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 4 1312 272 330 0 74 chr5 95384700 95384808 -57152451 - PB1D7 SINE Alu -20 100 1 4 1312 499 311 83 0 chr5 95385376 95385569 -57151690 + B3 SINE B2 2 210 -6 4 1312 593 228 20 20 chr5 95385740 95385888 -57151371 + B1_Mus1 SINE Alu 1 148 0 4 1312 352 290 21 66 chr5 95385914 95386071 -57151188 + B1_Mm SINE Alu 3 149 -1 4 1312 287 269 122 32 chr5 95386151 95386274 -57150985 + RSINE1 SINE B4 3 136 -29 4 1312 948 99 12 50 chr5 95386767 95386927 -57150332 - L1_Mus3 LINE L1 -7 6631 6478 4 1312 1361 154 4 50 chr5 95386930 95387190 -57150069 + L1_Mus4 LINE L1 5887 6134 -502 4 1312 270 333 11 0 chr5 95388690 95388777 -57148482 - B3 SINE B2 -128 88 1 4 1312 573 237 0 0 chr5 95388808 95388939 -57148320 - Lx7 LINE L1 -16 7680 7550 4 1312 299 260 153 8 chr5 95388950 95389074 -57148185 + B1F2 SINE Alu 7 148 -1 4 1312 572 281 75 86 chr5 95389222 95389461 -57147798 - Lx7 LINE L1 -229 7467 7227 4 1312 1068 110 0 0 chr5 95389461 95389607 -57147652 + B1_Mus1 SINE Alu 3 148 0 4 1312 572 281 75 86 chr5 95389607 95389807 -57147452 - Lx7 LINE L1 -470 7226 7033 4 1312 894 225 9 5 chr5 95389830 95390044 -57147215 - L1_Mur2 LINE L1 -207 5670 5456 4 1312 333 0 0 0 chr5 95390896 95390933 -57146326 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1312 3186 210 65 1 chr5 95391001 95391744 -57145515 - Lx2B LINE L1 -1 6999 6210 4 1312 394 266 29 99 chr5 95395220 95395391 -57141868 + RMER10B LTR ERVL 228 386 -12 4 1312 466 313 42 6 chr5 95395368 95395535 -57141724 + B3A SINE B2 8 180 -18 4 1312 377 332 42 0 chr5 95395848 95395982 -57141277 - B2_Mm2 SINE B2 -67 149 1 4 1312 1674 11 21 0 chr5 95396211 95396400 -57140859 + B2_Mm1a SINE B2 1 193 0 4 1312 29 28 0 0 chr5 95396690 95396726 -57140533 + AT_rich Low_complexity Low_complexity 1 36 0 4 1312 5653 239 18 24 chr5 95397134 95397584 -57139675 - Lx5 LINE L1 0 7050 6622 4 1312 1259 222 158 57 chr5 95397584 95397989 -57139270 - RLTR41 LTR ERV1 0 446 1 4 1312 5653 235 23 20 chr5 95397989 95399559 -57137700 - Lx5 LINE L1 -429 6621 5027 4 1312 1579 274 101 4 chr5 95399561 95400075 -57137184 + Lx5 LINE L1 6443 7006 -44 4 1312 309 157 0 0 chr5 95400121 95400172 -57137087 - Lx4B LINE L1 -541 6517 6467 4 1312 2762 76 0 0 chr5 95400176 95400558 -57136701 + L1_Mm LINE L1 4757 5138 -745 4 1312 7363 52 7 24 chr5 95400592 95401742 -57135517 - L1Md_F2 LINE L1 0 6582 5453 4 1312 4441 86 3 9 chr5 95401739 95402399 -57134860 + L1Md_F2 LINE L1 4800 5455 -428 4 1312 541 197 36 0 chr5 95402396 95402533 -57134726 - L1_Mur2 LINE L1 -688 5189 5048 4 1312 429 237 10 0 chr5 95402605 95402702 -57134557 + MTC-int LTR MaLR 909 1006 -252 5 1312 216 97 0 0 chr5 95402800 95402831 -57134428 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 5 1312 4660 127 8 0 chr5 95402840 95403550 -57133709 - L1_Mus3 LINE L1 -9 6629 5914 5 1312 221 235 30 10 chr5 95403667 95403766 -57133493 + (TA)n Simple_repeat Simple_repeat 2 102 0 5 1312 411 151 114 0 chr5 95404084 95404176 -57133083 - MTC LTR MaLR 0 421 268 5 1312 339 234 52 0 chr5 95404202 95404279 -57132980 - Lx5 LINE L1 -170 6880 6800 5 1312 1851 183 70 13 chr5 95404306 95404689 -57132570 + RLTR9E LTR ERVK 5 409 0 5 1312 565 147 29 29 chr5 95404693 95404798 -57132461 - MTC LTR MaLR -107 314 210 5 1312 1637 229 24 13 chr5 95404773 95405150 -57132109 - MTC-int LTR MaLR -451 807 427 5 1312 1331 254 59 36 chr5 95405263 95405655 -57131604 + MTD LTR MaLR 5 405 -14 5 1312 312 200 86 0 chr5 95405685 95405755 -57131504 - B3 SINE B2 -135 81 6 5 1312 399 283 42 28 chr5 95405768 95405910 -57131349 - MTC LTR MaLR -228 146 3 5 1312 749 52 0 0 chr5 95406706 95406802 -57130457 + B1_Mm SINE Alu 52 147 0 5 1312 438 292 63 23 chr5 95406831 95407228 -57130031 + L1MA4 LINE L1 5497 5927 -373 5 1312 308 160 80 0 chr5 95407597 95407672 -57129587 - Lx9 LINE L1 -1 7643 7563 5 1312 483 33 0 0 chr5 95407678 95407739 -57129520 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1312 325 297 29 31 chr5 95407889 95408121 -57129138 + L1VL1 LINE L1 255 485 -5933 5 1312 358 276 16 8 chr5 95408144 95408272 -57128987 + L1_Mus1 LINE L1 675 803 -5813 5 1312 28003 123 12 14 chr5 95408278 95414150 -57123109 + L1_Mus1 LINE L1 723 6567 0 5 1312 556 234 145 15 chr5 95414640 95414840 -57122419 - URR1A DNA MER1_type 0 226 1 5 1312 1046 145 6 0 chr5 95414913 95415072 -57122187 + B2_Mm1a SINE B2 1 160 -33 5 1312 180 0 0 0 chr5 95415072 95415092 -57122167 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5 1312 5942 111 28 2 chr5 95415103 95416057 -57121202 + L1_Mm LINE L1 4272 5250 -633 5 1312 1131 294 34 97 chr5 95416681 95417238 -57120021 + RMER5 LTR ERV1 8 529 -5 5 1312 263 246 0 14 chr5 95417428 95417502 -57119757 - Lx9 LINE L1 -173 7471 7399 5 1312 500 285 29 0 chr5 95417978 95418115 -57119144 - B1F SINE Alu -7 142 2 5 1312 292 304 19 29 chr5 95418216 95418321 -57118938 - ID_B1 SINE B4 -11 213 110 5 1312 333 47 0 0 chr5 95418587 95418630 -57118629 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1312 1155 144 6 0 chr5 95418634 95418815 -57118444 + MTC LTR MaLR 11 192 -229 5 1312 2710 223 90 75 chr5 95418845 95419590 -57117669 + MT-int LTR MaLR 4 801 -297 5 1312 4343 14 0 0 chr5 95419590 95420072 -57117187 + LTRIS_Mm LTR ERV1 1 482 0 5 1312 2710 223 90 75 chr5 95420072 95420281 -57116978 + MT-int LTR MaLR 802 972 -126 5 20 265 294 31 61 chr5 95420290 95420453 -57116806 - Lx7 LINE L1 -23 7673 7516 5 1313 11908 222 71 85 chr5 95420520 95422369 -57114890 - Lx5 LINE L1 0 7050 5114 5 1313 800 94 12 0 chr5 95422369 95422502 -57114757 - B1_Mm SINE Alu 0 149 10 5 1313 11908 222 71 85 chr5 95422502 95422968 -57114291 - Lx5 LINE L1 0 5113 4624 5 1313 2751 77 0 3 chr5 95422968 95423332 -57113927 - L1_Mus1 LINE L1 0 6567 6205 5 1313 11908 195 48 147 chr5 95423332 95425342 -57111917 - Lx5 LINE L1 -1254 4623 2617 5 1313 1349 164 55 73 chr5 95425342 95425670 -57111589 - RLTRETN_Mm LTR ERVK 0 322 1 5 1313 11908 195 48 147 chr5 95425670 95426564 -57110695 - Lx5 LINE L1 -1254 2616 1723 5 1313 2071 168 60 9 chr5 95426615 95427065 -57110194 - L1_Mur2 LINE L1 -906 4971 4499 5 1313 3341 199 46 1 chr5 95427532 95428299 -57108960 - L1_Mur2 LINE L1 -1378 4499 3699 5 1313 226 234 30 30 chr5 95428299 95428365 -57108894 - RLTR9A LTR ERVK -296 72 7 5 1313 391 38 48 48 chr5 95428434 95428517 -57108742 + (TTTTTG)n Simple_repeat Simple_repeat 2 84 0 5 1313 399 277 44 33 chr5 95428907 95429090 -57108169 - RLTR6-int LTR ERV1 -207 7571 7387 5 1313 779 152 7 0 chr5 95429085 95429223 -57108036 - RMER16-int LTR ERVK -1068 4338 4200 5 1313 3655 148 44 39 chr5 95429223 95429968 -57107291 - RMER17D LTR ERVK 0 889 141 5 1313 1454 184 92 0 chr5 95429975 95430268 -57106991 - IAPEY3_LTR LTR ERVK -12 320 1 5 1313 1278 181 61 20 chr5 95430268 95430611 -57106648 - IAPEz-int LTR ERVK 0 6481 6125 5 1313 3681 87 7 27 chr5 95430665 95430894 -57106365 - IAPEY3-int LTR ERVK -392 7288 7071 5 1313 4208 36 0 0 chr5 95430894 95431390 -57105869 + L1Md_T LINE L1 6087 6582 0 5 1313 3681 87 7 27 chr5 95431390 95431717 -57105542 - IAPEY3-int LTR ERVK -610 7070 6743 5 1313 3053 102 7 4 chr5 95431707 95432160 -57105099 - IAPEY3-int LTR ERVK -1367 6214 5761 5 1313 3140 91 0 16 chr5 95432151 95432598 -57104661 - IAPEY3-int LTR ERVK -1939 5642 5203 5 1313 795 76 17 8 chr5 95432875 95432994 -57104265 - IAPEY3-int LTR ERVK -2932 4649 4530 5 1313 428 188 19 34 chr5 95433010 95433133 -57104126 - MMETn-int LTR ERVK -2380 2464 2357 5 1313 1880 144 111 7 chr5 95433142 95433727 -57103532 - ETnERV2-int LTR ERVK -3142 4264 3567 5 1313 577 219 0 0 chr5 95433753 95433872 -57103387 - ETnERV2-int LTR ERVK -4653 2753 2635 5 1313 291 267 0 55 chr5 95433884 95433975 -57103284 - ETnERV2-int LTR ERVK -4867 2539 2454 5 1313 280 310 88 0 chr5 95433988 95434101 -57103158 - RLTR19-int LTR ERVK -5077 1060 938 5 1313 289 241 140 33 chr5 95434087 95434237 -57103022 - RLTR19-int LTR ERVK -5448 689 524 5 1313 1480 178 96 43 chr5 95434246 95434622 -57102637 - RMER16-int LTR ERVK -4760 646 251 5 1313 335 144 0 103 chr5 95434733 95434849 -57102410 - MMERVK10C-int LTR ERVK -6629 952 849 5 1313 5150 69 12 15 chr5 95434830 95435562 -57101697 - IAPLTR4_I LTR ERVK -704 766 37 5 1313 1437 178 88 10 chr5 95435562 95435879 -57101380 - IAPEY3_LTR LTR ERVK -1 366 1 5 1313 384 75 0 0 chr5 95435879 95435932 -57101327 - RMER17D2 LTR ERVK -659 150 98 5 1313 21461 60 2 2 chr5 95435942 95439607 -57097652 - L1Md_F3 LINE L1 -8 6576 2909 5 1313 748 143 0 9 chr5 95439607 95439720 -57097539 - RMER17D2 LTR ERVK -697 112 1 5 1313 698 100 8 62 chr5 95439720 95439848 -57097411 - RMER16-int LTR ERVK -1207 4199 4079 5 1313 3964 135 53 60 chr5 95439848 95440536 -57096723 - RMER16-int LTR ERVK -3017 2389 1677 5 1313 865 109 0 149 chr5 95440536 95440697 -57096562 + B1_Mm SINE Alu 1 137 -10 5 1313 3964 135 53 60 chr5 95440697 95440711 -57096548 - RMER16-int LTR ERVK -3730 1676 1676 5 1313 212 59 29 0 chr5 95440711 95440745 -57096514 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1313 3964 135 53 60 chr5 95440745 95440871 -57096388 - RMER16-int LTR ERVK -3730 1676 1566 5 1313 255 299 15 30 chr5 95440924 95441055 -57096204 - ETnERV2-int LTR ERVK -3812 2355 2227 5 1313 528 251 25 131 chr5 95441164 95441449 -57095810 - ETnERV2-int LTR ERVK -4859 2547 2322 5 1313 270 152 0 0 chr5 95441500 95441559 -57095700 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1313 482 227 8 15 chr5 95441820 95441950 -57095309 - ETnERV2-int LTR ERVK -3822 1584 1456 5 1313 6878 88 6 1 chr5 95441952 95443243 -57094016 - L1Md_F2 LINE L1 0 6582 5282 5 1313 240 162 0 0 chr5 95443644 95443681 -57093578 - RMER10A LTR ERVL -394 48 12 5 1313 1056 229 97 10 chr5 95444691 95445000 -57092259 - L1_Mur2 LINE L1 -893 4984 4649 5 1313 1832 198 37 0 chr5 95444995 95445344 -57091915 - Lx2B LINE L1 -393 6607 6246 5 1313 210 284 44 100 chr5 95445454 95445544 -57091715 - PB1D7 SINE Alu -23 97 13 5 1313 1353 207 42 70 chr5 95445682 95445911 -57091348 + RMER16 LTR ERVK 1 320 -213 5 1313 2154 159 30 0 chr5 95445911 95446307 -57090952 - Lx LINE L1 -7 6647 6240 5 1313 1353 225 62 33 chr5 95446307 95446521 -57090738 + RMER16 LTR ERVK 321 533 0 5 1313 1220 237 86 24 chr5 95446872 95447209 -57090050 + Lx7 LINE L1 7010 7367 -329 5 1313 1954 228 31 12 chr5 95447222 95447639 -57089620 - Lx4A LINE L1 0 7058 6634 5 1313 365 237 13 67 chr5 95447634 95447783 -57089476 + Lx7 LINE L1 7371 7511 -185 5 1313 554 286 7 7 chr5 95448022 95448170 -57089089 - B1_Mus1 SINE Alu 0 148 1 5 1313 260 315 60 23 chr5 95448214 95448347 -57088912 - B1_Mur4 SINE Alu -12 138 1 5 1313 401 341 0 0 chr5 95448356 95448488 -57088771 - B1_Mur1 SINE Alu -8 141 10 5 1313 499 303 7 0 chr5 95448519 95448671 -57088588 - B3 SINE B2 -4 212 60 5 1313 261 345 80 15 chr5 95448842 95449042 -57088217 - ID_B1 SINE B4 -8 216 4 5 1313 249 237 64 118 chr5 95449289 95449399 -57087860 + PB1D7 SINE Alu 3 106 -14 5 1313 351 192 0 55 chr5 95450233 95450343 -57086916 + T-rich Low_complexity Low_complexity 2 105 0 5 1313 311 255 0 0 chr5 95450472 95450570 -57086689 + T-rich Low_complexity Low_complexity 1 98 0 5 1313 300 182 0 0 chr5 95450607 95450673 -57086586 - Lx3B LINE L1 -5 6968 6903 5 1313 216 0 0 0 chr5 95450696 95450720 -57086539 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1313 1090 96 7 0 chr5 95450720 95450866 -57086393 - B1_Mus1 SINE Alu 0 148 2 5 1313 3860 205 43 3 chr5 95450876 95451640 -57085619 - Lx2B LINE L1 -3 6997 6203 5 1313 31 26 0 0 chr5 95452449 95452487 -57084772 + AT_rich Low_complexity Low_complexity 1 38 0 5 1313 289 298 8 42 chr5 95455908 95456027 -57081232 + RMER10B LTR ERVL 227 341 -57 5 1313 495 272 17 61 chr5 95456452 95456632 -57080627 - B2_Mm2 SINE B2 -22 173 2 5 1313 7757 86 3 0 chr5 95457432 95458456 -57078803 + L1Md_F2 LINE L1 4560 5586 -297 5 1313 7819 64 2 3 chr5 95458456 95459441 -57077818 + L1Md_F2 LINE L1 5587 6570 -12 5 1313 239 296 96 27 chr5 95459593 95459739 -57077520 - Lx5 LINE L1 -1 7049 6894 5 1313 269 291 21 147 chr5 95460104 95460342 -57076917 + RMER17C-int LTR ERVK 379 586 -2652 5 1313 651 301 45 117 chr5 95460219 95460945 -57076314 + RodERV21-int LTR ERV1 745 1418 -3573 5 1313 288 0 0 0 chr5 95460945 95460977 -57076282 + (TTA)n Simple_repeat Simple_repeat 1 32 0 5 1313 7654 71 1 9 chr5 95460977 95462242 -57075017 - L1Md_F2 LINE L1 -23 6559 5304 5 1313 2508 296 8 20 chr5 95462242 95462991 -57074268 + RodERV21-int LTR ERV1 1410 2149 -2842 5 1313 224 295 0 0 chr5 95464229 95464290 -57072969 + B3 SINE B2 8 68 -148 5 1313 12844 61 2 2 chr5 95464437 95466057 -57071202 + L1Md_F2 LINE L1 3967 5586 -297 5 1313 7953 47 12 14 chr5 95466058 95467055 -57070204 + L1Md_F2 LINE L1 5588 6582 0 5 1313 399 308 0 60 chr5 95467272 95467438 -57069821 - B2_Mm2 SINE B2 -22 173 18 5 1313 6166 238 15 24 chr5 95468397 95468840 -57068419 - Lx5 LINE L1 0 7050 6619 5 1313 1721 223 95 40 chr5 95468840 95469261 -57067998 - RLTR41 LTR ERV1 0 446 3 5 1313 6166 234 52 16 chr5 95469261 95470787 -57066472 - Lx5 LINE L1 -432 6618 5027 5 1313 1528 273 107 14 chr5 95470789 95471305 -57065954 + Lx5 LINE L1 6443 7006 -44 5 1313 3692 242 22 9 chr5 95471337 95472660 -57064599 - Lx5 LINE L1 -543 6507 5160 5 1313 1151 297 41 84 chr5 95472660 95473174 -57064085 + RodERV21-int LTR ERV1 2227 2718 -2273 5 1313 513 340 30 45 chr5 95473342 95473783 -57063476 + RodERV21-int LTR ERV1 3638 4071 -3020 5 1313 306 186 16 53 chr5 95475258 95475365 -57061894 + RodERV21-int LTR ERV1 4830 4949 -2657 5 1313 1086 355 43 59 chr5 95475851 95476715 -57060544 + RodERV21-int LTR ERV1 2869 3718 -1273 5 1313 239 227 15 29 chr5 95477215 95477283 -57059976 + ID4_ SINE ID 5 71 -12 5 1313 950 105 30 18 chr5 95477506 95477671 -57059588 - B2_Mm2 SINE B2 0 195 29 5 1313 1478 63 21 0 chr5 95477671 95477860 -57059399 - B2_Mm2 SINE B2 -1 194 2 5 1313 401 0 0 20 chr5 95477894 95477944 -57059315 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 5 1313 351 125 0 0 chr5 95477959 95478031 -57059228 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1313 225 167 0 0 chr5 95478423 95478459 -57058800 - RMER10A LTR ERVL -395 47 12 6 1313 336 284 0 0 chr5 95480287 95480375 -57056884 - B3 SINE B2 -128 88 1 6 1313 599 188 53 0 chr5 95480391 95480524 -57056735 - Lx7 LINE L1 -1 7695 7556 6 1313 345 258 117 0 chr5 95480541 95480661 -57056598 + B1_Mm SINE Alu 1 134 -13 6 1313 7027 108 7 8 chr5 95480726 95482090 -57055169 - L1_Mus1 LINE L1 -1 6566 5206 6 1313 1593 110 0 0 chr5 95482094 95482312 -57054947 + L1Md_F2 LINE L1 6082 6299 -283 6 1313 268 194 209 0 chr5 95482312 95482379 -57054880 + RLTR6_Mm LTR ERV1 1 81 -573 6 1313 1785 121 269 51 chr5 95482419 95482873 -57054386 + RLTR6_Mm LTR ERV1 37 589 -65 6 1313 66630 25 17 7 chr5 95482873 95490587 -57046672 + RLTR6-int LTR ERV1 1 7778 0 6 1313 2094 113 232 43 chr5 95490696 95491157 -57046102 + RLTR6_Mm LTR ERV1 37 584 -70 6 1313 2151 212 167 28 chr5 95491602 95492294 -57044965 - Lx2B LINE L1 -2 6998 6210 6 1313 224 295 0 0 chr5 95496695 95496756 -57040503 + B3 SINE B2 8 68 -148 6 1313 13097 54 0 2 chr5 95496903 95498526 -57038733 + L1Md_F2 LINE L1 3967 5585 -298 6 1313 8161 47 2 4 chr5 95498527 95499524 -57037735 + L1Md_F2 LINE L1 5587 6581 -1 6 1313 396 314 0 60 chr5 95499741 95499907 -57037352 - B2_Mm2 SINE B2 -22 173 18 6 1313 4944 243 45 17 chr5 95500864 95501259 -57036000 - Lx5 LINE L1 -4 7054 6606 1 1313 1690 224 98 41 chr5 95501259 95501678 -57035581 - RLTR41 LTR ERV1 0 446 4 2 1313 4944 234 42 8 chr5 95501678 95503186 -57034073 - Lx5 LINE L1 -445 6605 5027 1 1313 1400 278 103 10 chr5 95503188 95503704 -57033555 + Lx5 LINE L1 6443 7006 -44 3 1313 3397 234 24 29 chr5 95503736 95505187 -57032072 - Lx5 LINE L1 -543 6507 5044 4 1313 440 172 43 11 chr5 95505256 95505350 -57031909 + MTC-int LTR MaLR 910 1006 -252 5 1313 249 182 0 0 chr5 95505985 95506029 -57031230 - MTEb LTR MaLR 0 419 376 6 1313 928 126 0 0 chr5 95506031 95506166 -57031093 + B1_Mus1 SINE Alu 2 136 -12 7 1313 450 232 69 42 chr5 95506361 95506505 -57030754 + MTD LTR MaLR 272 419 0 8 1313 3971 126 36 53 chr5 95506999 95507836 -57029423 - RMER17D LTR ERVK 0 889 67 9 1313 1491 104 4 9 chr5 95507851 95508083 -57029176 - L1Md_F2 LINE L1 -2 6580 6350 1 1313 615 235 128 15 chr5 95508567 95508770 -57028489 - URR1A DNA MER1_type 0 226 1 1 1313 783 265 139 31 chr5 95509160 95509483 -57027776 - MTEb LTR MaLR -21 358 1 6 1313 405 239 49 35 chr5 95509854 95509997 -57027262 + B1_Mur3 SINE Alu 3 147 -2 1 1313 572 382 40 23 chr5 95510025 95510376 -57026883 + MTEa LTR MaLR 3 359 -20 1 1313 391 304 78 34 chr5 95511080 95511284 -57025975 + RMER5 LTR ERV1 13 225 -309 1 1313 457 264 47 68 chr5 95511445 95511636 -57025623 + RMER5 LTR ERV1 331 517 -17 1 1313 261 0 0 0 chr5 95511642 95511671 -57025588 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1313 580 285 25 35 chr5 95511971 95512171 -57025088 - B3A SINE B2 0 198 1 1 1313 36 23 0 0 chr5 95512172 95512215 -57025044 + AT_rich Low_complexity Low_complexity 1 43 0 1 1313 384 22 0 0 chr5 95512303 95512348 -57024911 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1313 387 0 0 0 chr5 95512348 95512390 -57024869 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1313 235 325 74 40 chr5 95512495 95512697 -57024562 - ID_B1 SINE B4 -11 213 5 2 1313 223 154 0 0 chr5 95512872 95512911 -57024348 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1313 1003 182 16 0 chr5 95512922 95513114 -57024145 + MTC LTR MaLR 6 200 -221 2 1313 2314 247 100 53 chr5 95513144 95513981 -57023278 + MT-int LTR MaLR 4 880 -218 2 1313 3638 101 16 10 chr5 95514570 95515180 -57022079 - MusHAL1 LINE L1 -632 2080 1467 2 1313 1335 164 0 0 chr5 95515204 95515429 -57021830 - L1VL2 LINE L1 -5934 401 177 2 1313 298 186 135 19 chr5 95515430 95515534 -57021725 + MT-int LTR MaLR 996 1111 -147 2 1313 545 302 44 49 chr5 95515539 95515765 -57021494 - Lx6 LINE L1 -28 7432 7208 2 1313 4331 247 98 22 chr5 95515784 95516523 -57020736 - Lx5 LINE L1 0 7050 6286 2 1313 1114 55 7 7 chr5 95516523 95516670 -57020589 + B1_Mm SINE Alu 1 147 0 2 1313 9910 208 52 32 chr5 95516670 95519584 -57017675 - Lx5 LINE L1 -765 6285 3284 2 1313 424 155 0 72 chr5 95519584 95519695 -57017564 - L1_Mus3 LINE L1 0 6638 6536 2 1313 9910 201 44 34 chr5 95519695 95519853 -57017406 - Lx5 LINE L1 -2594 3283 3129 2 1313 508 200 0 8 chr5 95519871 95520002 -57017257 - Lx LINE L1 -1 6653 6524 3 1313 295 338 52 8 chr5 95520067 95520201 -57017058 - ID_B1 SINE B4 -1 223 84 3 1313 212 309 168 16 chr5 95520341 95520466 -57016793 + ID_B1 SINE B4 81 224 0 3 1313 33204 78 2 15 chr5 95520502 95526615 -57010644 - L1Md_F2 LINE L1 0 6582 556 3 1313 210 150 0 0 chr5 95527334 95527374 -57009885 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1313 347 331 99 20 chr5 95527770 95527921 -57009338 - B3A SINE B2 -11 187 25 3 1313 233 266 29 86 chr5 95529853 95529923 -57007336 - RLTR19A LTR ERVK -360 136 71 3 1313 362 57 19 0 chr5 95531901 95531954 -57005305 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1313 230 271 17 0 chr5 95532029 95532088 -57005171 + B1_Mur3 SINE Alu 85 144 -5 3 1313 654 171 0 0 chr5 95532490 95532607 -57004652 + L1_Mus4 LINE L1 6018 6134 -502 3 1313 277 322 11 0 chr5 95534110 95534197 -57003062 - B3 SINE B2 -128 88 1 4 1313 629 222 7 0 chr5 95534214 95534358 -57002901 - Lx7 LINE L1 -2 7694 7550 4 1313 289 268 153 8 chr5 95534369 95534493 -57002766 + B1F2 SINE Alu 7 148 -1 4 1313 810 29 10 0 chr5 95534887 95534991 -57002268 - L1Md_F3 LINE L1 -678 5906 5802 4 1313 2445 45 13 0 chr5 95534993 95535304 -57001955 + L1Md_F3 LINE L1 6256 6570 -14 4 1313 690 235 11 5 chr5 95535338 95535522 -57001737 - L1_Mur2 LINE L1 -240 5637 5453 4 1313 2916 206 20 2 chr5 95536443 95537174 -57000085 - Lx2B LINE L1 -16 6981 6211 4 1313 352 277 30 103 chr5 95541435 95541600 -56995659 + RMER10B LTR ERVL 234 386 -12 4 1313 469 319 42 6 chr5 95541577 95541744 -56995515 + B3A SINE B2 8 180 -18 4 1313 431 335 22 61 chr5 95542010 95542191 -56995068 - B2_Mm2 SINE B2 -21 174 1 4 1313 23 54 0 0 chr5 95542696 95542733 -56994526 + AT_rich Low_complexity Low_complexity 1 37 0 5 1313 5867 231 16 24 chr5 95543137 95543587 -56993672 - Lx5 LINE L1 0 7050 6622 5 1313 1602 206 104 52 chr5 95543587 95544011 -56993248 - RLTR41 LTR ERV1 0 446 1 5 1313 5867 234 18 19 chr5 95544011 95545578 -56991681 - Lx5 LINE L1 -429 6621 5027 5 1313 1563 273 88 6 chr5 95545598 95546088 -56991171 + Lx5 LINE L1 6477 7006 -44 5 1313 312 157 0 0 chr5 95546134 95546185 -56991074 - Lx5 LINE L1 -541 6517 6467 5 1313 5855 89 0 0 chr5 95546190 95547019 -56990240 + L1Md_F2 LINE L1 4758 5586 -297 5 1313 7591 75 1 0 chr5 95547020 95548013 -56989246 + L1Md_F2 LINE L1 5588 6581 -1 5 1313 3165 234 38 3 chr5 95548055 95549394 -56987865 - Lx5 LINE L1 -599 6451 5054 5 1313 400 240 10 0 chr5 95549473 95549569 -56987690 + MTC-int LTR MaLR 910 1006 -252 5 1313 261 83 0 0 chr5 95549667 95549703 -56987556 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 5 1313 4713 130 19 0 chr5 95549712 95550442 -56986817 - L1_Mus3 LINE L1 -9 6629 5886 5 1313 486 0 0 0 chr5 95550544 95550598 -56986661 + (TA)n Simple_repeat Simple_repeat 2 55 0 5 1313 359 133 118 13 chr5 95550937 95551013 -56986246 - MTC LTR MaLR 0 421 338 6 1313 358 212 50 0 chr5 95551052 95551132 -56986127 - Lx5 LINE L1 -167 6883 6800 6 1313 1239 155 94 20 chr5 95551170 95551414 -56985845 + RLTR9E LTR ERVK 6 267 -142 6 1313 580 29 0 0 chr5 95551414 95551484 -56985775 + L1Md_F3 LINE L1 5517 5586 -297 6 164 7983 45 1 5 chr5 95551484 95552485 -56984774 + L1Md_F3 LINE L1 5587 6583 -1 6 1314 574 231 23 8 chr5 95552575 95552706 -56984553 + RLTR9E LTR ERVK 277 409 0 6 1314 547 172 10 0 chr5 95552706 95552800 -56984459 - MTC LTR MaLR -103 318 224 6 1314 1647 228 35 5 chr5 95552790 95553160 -56984099 - MTC-int LTR MaLR -451 807 427 6 1314 1318 266 60 27 chr5 95553273 95553675 -56983584 + MTD LTR MaLR 5 419 0 6 1314 312 200 86 0 chr5 95553692 95553762 -56983497 - B3 SINE B2 -135 81 6 6 1314 416 286 28 28 chr5 95553775 95553919 -56983340 - MTC LTR MaLR -228 146 3 6 1314 19639 109 10 8 chr5 95554047 95558934 -56978325 + L1_Mus1 LINE L1 1671 6654 0 6 1314 849 205 129 10 chr5 95559457 95559659 -56977600 - URR1A DNA MER1_type 0 226 1 6 1314 5233 108 13 0 chr5 95559960 95560666 -56976593 - L1_Mus3 LINE L1 -8 6630 5916 6 1314 319 73 0 5 chr5 95560666 95560719 -56976540 - PB1D9 SINE Alu -94 55 4 7 1314 5099 109 7 3 chr5 95560719 95561520 -56975739 - L1VL1 LINE L1 -1934 1764 964 7 1314 1452 61 55 0 chr5 95561520 95561701 -56975558 - B2_Mm2 SINE B2 -3 192 2 7 1314 3621 142 165 9 chr5 95561701 95562300 -56974959 - L1VL1 LINE L1 -5459 963 246 7 1314 677 246 101 85 chr5 95562455 95562640 -56974619 - MTEb LTR MaLR -21 358 167 7 1314 2801 92 79 0 chr5 95562640 95563021 -56974238 - RLTR10A LTR ERVK 0 411 1 7 1314 677 255 130 50 chr5 95563021 95563164 -56974095 - MTEb LTR MaLR -213 166 2 7 1314 4165 55 0 0 chr5 95563172 95563647 -56973612 + MT2C_Mm LTR ERVL 1 475 0 7 1314 478 222 79 36 chr5 95564008 95564148 -56973111 + B1_Mus2 SINE Alu 2 147 0 7 1314 684 339 60 37 chr5 95564184 95564533 -56972726 + MTEa LTR MaLR 3 359 -20 7 1314 7702 69 3 11 chr5 95565082 95566122 -56971137 - L1_Mus1 LINE L1 -4 6563 5540 7 1314 635 321 32 92 chr5 95566262 95566632 -56970627 + RMER5 LTR ERV1 13 360 -174 7 1314 3177 95 7 0 chr5 95566633 95567042 -56970217 - L1_Mus1 LINE L1 0 6567 6156 8 1314 3744 55 0 0 chr5 95567045 95567503 -56969756 + L1Md_F2 LINE L1 5654 6111 -471 8 1314 558 236 41 46 chr5 95567523 95567718 -56969541 + RMER5 LTR ERV1 331 524 -10 7 1314 189 26 0 73 chr5 95567719 95567760 -56969499 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 8 1314 397 317 17 34 chr5 95567937 95568175 -56969084 - Lx9 LINE L1 -133 7511 7278 8 1314 529 285 29 0 chr5 95568511 95568648 -56968611 - B1F SINE Alu -7 142 2 8 1314 275 319 93 10 chr5 95568750 95568943 -56968316 - ID_B1 SINE B4 -11 213 5 8 1314 330 107 0 0 chr5 95569120 95569176 -56968083 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1314 588 95 0 0 chr5 95569176 95569260 -56967999 + (GA)n Simple_repeat Simple_repeat 1 84 0 8 1314 971 146 79 0 chr5 95569269 95569433 -56967826 + MTC LTR MaLR 12 188 -233 8 1314 2470 234 102 71 chr5 95569466 95570397 -56966862 + MT-int LTR MaLR 4 963 -135 8 1314 551 271 93 42 chr5 95570404 95570620 -56966639 - Lx6 LINE L1 -26 7434 7208 9 1314 17691 205 74 14 chr5 95570641 95575373 -56961886 - Lx5 LINE L1 -2 7048 2055 9 1314 333 68 0 0 chr5 95575373 95575417 -56961842 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1314 17691 187 64 15 chr5 95575417 95575712 -56961547 - Lx5 LINE L1 -3823 2054 1723 9 1314 2888 200 35 198 chr5 95575764 95577201 -56960058 - L1_Mur2 LINE L1 -907 4970 3810 9 1314 933 117 70 0 chr5 95577201 95577329 -56959930 - B1_Mus2 SINE Alu -10 137 1 9 1314 2888 200 35 198 chr5 95577329 95577597 -56959662 - L1_Mur2 LINE L1 -2068 3809 3545 9 1314 522 233 224 81 chr5 95577597 95577919 -56959340 - RLTR9A LTR ERVK 0 368 1 9 1314 2888 200 35 198 chr5 95577919 95577987 -56959272 - L1_Mur2 LINE L1 -2333 3544 3485 9 1314 732 181 113 0 chr5 95577993 95578126 -56959133 - ORR1A2 LTR MaLR -68 259 112 9 1314 1745 210 42 2 chr5 95578130 95578535 -56958724 - L1_Mur2 LINE L1 -3940 1940 1520 9 1314 1970 237 28 2 chr5 95578700 95579132 -56958127 - RLTR21 LTR ERVK -1124 448 6 9 1314 1364 174 61 10 chr5 95579426 95579722 -56957537 - MYSERV6-int LTR ERVK -1250 7709 7399 9 1314 902 190 27 11 chr5 95579765 95579951 -56957308 - B2_Mm2 SINE B2 -5 190 2 9 1314 333 149 15 15 chr5 95579979 95580047 -56957212 - ORR1A4 LTR MaLR -8 321 254 1 1314 432 259 28 14 chr5 95580034 95580179 -56957080 - RLTR12B LTR ERVK -341 187 41 1 1314 1528 244 46 64 chr5 95580201 95580763 -56956496 - MYSERV6-int LTR ERVK -56 8903 8426 9 1314 483 18 0 0 chr5 95580764 95580820 -56956439 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1314 990 151 17 11 chr5 95580936 95581110 -56956149 - B2_Mm2 SINE B2 -20 175 1 1 1314 1247 181 53 8 chr5 95581110 95581372 -56955887 - L1_Mur2 LINE L1 -3864 2013 1740 1 1314 5906 126 50 22 chr5 95581361 95582100 -56955159 + L1VL2 LINE L1 38 784 -5551 1 1314 3132 54 0 0 chr5 95582100 95582472 -56954787 - L1Md_F3 LINE L1 -14 6570 6199 1 1314 5906 91 64 8 chr5 95582472 95582795 -56954464 + L1VL2 LINE L1 785 1127 -2488 1 1314 361 242 68 70 chr5 95582902 95583056 -56954203 - RLTR13D3 LTR ERVK 0 1114 981 1 1314 1529 54 0 21 chr5 95583505 95583694 -56953565 + B2_Mm1t SINE B2 2 186 -7 1 1314 432 0 0 0 chr5 95584111 95584159 -56953100 + (TTTC)n Simple_repeat Simple_repeat 3 50 0 1 1314 5912 135 55 4 chr5 95584159 95585394 -56951865 - Lx LINE L1 -16 6638 5314 1 1314 3917 55 4 6 chr5 95585411 95585883 -56951376 - L1Md_F2 LINE L1 -13 6569 6099 1 1314 7118 75 0 5 chr5 95585883 95587026 -56950233 + L1Md_F2 LINE L1 4951 6086 -498 1 1314 22063 98 25 9 chr5 95587030 95591663 -56945596 - Lx LINE L1 -586 5291 233 1 1314 333 262 39 39 chr5 95592884 95593011 -56944248 + RMER10B LTR ERVL 216 342 -56 1 1314 329 347 23 65 chr5 95593036 95593252 -56944007 + B3 SINE B2 6 212 -4 1 1314 794 202 42 65 chr5 95593537 95593754 -56943505 + RMER3D-int LTR ERVK 1998 2209 -633 1 1314 498 264 35 70 chr5 95593819 95593974 -56943285 - Lx7 LINE L1 0 7696 7543 1 1314 565 227 106 0 chr5 95593974 95594106 -56943153 + B1_Mus2 SINE Alu 1 146 -1 1 1314 498 264 35 70 chr5 95594106 95594188 -56943071 - Lx7 LINE L1 -154 7542 7468 1 1314 930 130 58 7 chr5 95594188 95594233 -56943026 + B1_Mus2 SINE Alu 1 45 -102 1 1314 1005 158 0 0 chr5 95594233 95594410 -56942849 + (CAGAGA)n Simple_repeat Simple_repeat 1 177 0 1 1314 930 130 58 7 chr5 95594410 95594503 -56942756 + B1_Mus2 SINE Alu 46 144 -3 1 1314 952 288 33 97 chr5 95594503 95594989 -56942270 - Lx7 LINE L1 -206 7490 7036 1 1314 7767 224 36 21 chr5 95595012 95597054 -56940205 - L1_Mur2 LINE L1 -207 5670 3598 1 1314 522 157 0 0 chr5 95597054 95597156 -56940103 + (TAGA)n Simple_repeat Simple_repeat 2 103 0 1 1314 6357 129 15 37 chr5 95597402 95598358 -56938901 - L1_Mus3 LINE L1 -7 6631 5686 1 1314 1343 92 71 5 chr5 95598358 95598555 -56938704 + L1Md_F2 LINE L1 6368 6577 -5 1 1314 6357 161 17 43 chr5 95598555 95599142 -56938117 - L1_Mus3 LINE L1 -198 5685 5099 1 1314 239 71 24 0 chr5 95599157 95599199 -56938060 + (TTTTTG)n Simple_repeat Simple_repeat 4 46 0 1 1314 4648 20 0 0 chr5 95599208 95599701 -56937558 + MT2_Mm LTR ERVL 1 493 0 1 1314 48877 15 0 0 chr5 95599701 95605060 -56932199 + MERVL-int LTR ERVL 1 5360 -125 1 1314 387 167 46 35 chr5 95605060 95605147 -56932112 + ORR1A3-int LTR MaLR 553 640 -1323 1 1314 311 26 0 0 chr5 95605147 95605185 -56932074 + MERVL-int LTR ERVL 5448 5485 0 1 1314 1459 28 0 0 chr5 95605185 95605361 -56931898 + MT2_Mm LTR ERVL 1 176 -317 1 1314 10329 119 5 149 chr5 95605361 95606823 -56930436 + L1_Mus1 LINE L1 4053 5499 -384 1 1314 1037 137 7 0 chr5 95606823 95606969 -56930290 + B1_Mus2 SINE Alu 1 147 0 1 1314 1239 61 0 20 chr5 95606973 95607123 -56930136 + B1_Mm SINE Alu 1 147 0 1 1314 10329 119 5 149 chr5 95607123 95607135 -56930124 + L1_Mus1 LINE L1 5500 5500 -383 1 1314 1298 48 0 0 chr5 95607135 95607282 -56929977 + B1_Mm SINE Alu 1 147 0 1 1314 10329 119 5 149 chr5 95607282 95607436 -56929823 + L1_Mus1 LINE L1 5500 5500 -383 1 1314 1154 103 7 0 chr5 95607436 95607582 -56929677 + B1_Mus2 SINE Alu 1 147 0 1 1314 1254 61 0 20 chr5 95607586 95607736 -56929523 + B1_Mm SINE Alu 1 147 0 1 1314 10329 119 5 149 chr5 95607736 95607826 -56929433 + L1_Mus1 LINE L1 5500 5500 -383 1 1314 1181 102 0 0 chr5 95607826 95607973 -56929286 + B1_Mus2 SINE Alu 1 147 0 1 1314 10329 79 4 48 chr5 95607973 95608949 -56928310 + L1_Mus1 LINE L1 5500 6424 -143 1 1314 1184 75 7 0 chr5 95608949 95609095 -56928164 - B1_Mus2 SINE Alu 0 147 1 1 1314 7414 74 4 35 chr5 95609095 95609243 -56928016 + L1_Mus1 LINE L1 6425 6567 0 1 1314 214 288 68 0 chr5 95609435 95609508 -56927751 - PB1D7 SINE Alu -2 118 41 1 1314 221 167 0 0 chr5 95609600 95609636 -56927623 + B3 SINE B2 2 37 -179 1 1314 322 299 0 0 chr5 95609652 95609739 -56927520 - B3 SINE B2 -129 87 1 1 1314 1554 249 25 118 chr5 95609740 95609909 -56927350 - Lx7 LINE L1 -1 7695 7547 1 1314 440 197 171 16 chr5 95609909 95610038 -56927221 + B1F2 SINE Alu 1 149 0 1 1314 1554 244 23 128 chr5 95610038 95610169 -56927090 - Lx7 LINE L1 -150 7546 7446 1 1314 305 24 0 23 chr5 95610169 95610212 -56927047 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1 1314 1554 244 23 128 chr5 95610212 95610654 -56926605 - Lx7 LINE L1 -251 7445 7043 1 1314 3849 231 12 34 chr5 95610665 95611335 -56925924 - L1_Mur2 LINE L1 -204 5673 5019 1 1314 2870 131 38 40 chr5 95611335 95611811 -56925448 + MT2C_Mm LTR ERVL 1 475 0 1 1314 3846 231 12 34 chr5 95611811 95612188 -56925071 - L1_Mur2 LINE L1 -859 5018 4649 1 1314 1907 176 16 53 chr5 95612183 95612455 -56924804 - Lx2B LINE L1 -393 6607 6338 1 1314 990 161 0 0 chr5 95612455 95612598 -56924661 + B1_Mus1 SINE Alu 1 143 -5 1 1314 1907 176 16 53 chr5 95612598 95612703 -56924556 - Lx2B LINE L1 -663 6337 6244 1 1314 245 369 8 59 chr5 95612798 95612916 -56924343 - PB1D7 SINE Alu -8 112 1 1 1314 1455 232 76 17 chr5 95613065 95613266 -56923993 + RMER16 LTR ERVK 103 326 -207 1 1314 2217 164 56 2 chr5 95613266 95613662 -56923597 - Lx LINE L1 -7 6647 6231 1 1314 1455 232 76 17 chr5 95613662 95613867 -56923392 + RMER16 LTR ERVK 327 532 -1 1 1314 228 35 0 0 chr5 95614473 95614502 -56922757 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1314 1191 266 117 40 chr5 95614502 95614929 -56922330 + Lx7 LINE L1 6902 7361 -335 1 1314 1902 241 14 12 chr5 95614962 95615386 -56921873 - Lx4A LINE L1 0 7058 6634 1 1314 417 227 12 72 chr5 95615366 95615532 -56921727 + Lx7 LINE L1 7356 7511 -185 1 1314 219 291 93 37 chr5 95615593 95615700 -56921559 - RSINE1 SINE B4 -35 130 18 1 1314 561 238 8 8 chr5 95615773 95615900 -56921359 - B1_Mm SINE Alu 0 147 21 1 1314 469 232 53 60 chr5 95615944 95616095 -56921164 - B1_Mur4 SINE Alu 0 150 1 1 1314 412 368 0 0 chr5 95616104 95616240 -56921019 - B1_Mur1 SINE Alu -8 141 6 1 1314 1021 109 0 35 chr5 95616269 95616411 -56920848 + B1_Mus1 SINE Alu 1 137 -11 1 1314 297 0 0 0 chr5 95616411 95616444 -56920815 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1314 584 305 0 0 chr5 95616448 95616599 -56920660 - B3 SINE B2 -5 211 61 1 1314 250 342 58 75 chr5 95616789 95616909 -56920350 - B1F SINE Alu -28 121 4 1 1314 313 263 9 92 chr5 95617233 95617342 -56919917 + PB1D7 SINE Alu 3 102 -18 1 1314 223 244 13 0 chr5 95618266 95618295 -56918964 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1314 201 39 0 0 chr5 95618295 95618321 -56918938 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1314 223 244 13 0 chr5 95618321 95618369 -56918890 + (TTTG)n Simple_repeat Simple_repeat 3 51 0 1 1314 317 182 61 0 chr5 95618399 95618465 -56918794 - Lx3B LINE L1 -6 6967 6898 1 1314 3311 205 78 4 chr5 95618479 95619212 -56918047 - Lx2B LINE L1 -11 6989 6203 1 1314 3498 87 48 4 chr5 95619221 95619683 -56917576 + RLTR45 LTR ERVK 1 482 0 1 1314 243 203 0 0 chr5 95620509 95620583 -56916676 + (TAA)n Simple_repeat Simple_repeat 1 74 0 1 1314 1142 91 0 0 chr5 95620708 95620851 -56916408 + B1_Mus2 SINE Alu 5 147 0 1 1314 189 0 0 0 chr5 95622094 95622115 -56915144 + (CTTG)n Simple_repeat Simple_repeat 2 22 0 1 1314 216 0 0 0 chr5 95622113 95622137 -56915122 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1314 717 161 17 0 chr5 95622137 95622255 -56915004 - PB1D9 SINE Alu 0 120 1 1 1314 332 274 24 24 chr5 95624293 95624420 -56912839 + RMER10B LTR ERVL 216 342 -56 1 1314 7227 58 5 0 chr5 95624454 95625382 -56911877 + L1_Mm LINE L1 2424 3356 -2527 1 1314 456 323 30 6 chr5 95625391 95625556 -56911703 + B3A SINE B2 8 176 -22 1 1314 29 0 0 0 chr5 95625593 95625622 -56911637 + AT_rich Low_complexity Low_complexity 1 29 0 1 1314 895 195 48 151 chr5 95625691 95626042 -56911217 - RLTRETN_Mm LTR ERVK 0 322 8 1 1314 632 225 5 80 chr5 95626199 95626387 -56910872 - B2_Mm2 SINE B2 -21 174 1 1 1314 3638 64 23 2 chr5 95626522 95626959 -56910300 - L1_Mus1 LINE L1 0 6567 6122 1 1314 209 289 188 40 chr5 95627103 95627204 -56910055 + L2b LINE L2 3238 3353 -22 1 1314 1255 68 0 0 chr5 95627385 95627533 -56909726 + B1_Mus1 SINE Alu 1 148 0 1 1314 225 218 93 65 chr5 95628670 95628778 -56908481 + MURVY-LTR LTR ERV1 351 461 -58 1 1314 467 184 7 13 chr5 95628795 95628897 -56908362 - Lx5 LINE L1 -121 6929 6774 1 1314 1343 331 46 45 chr5 95628899 95629567 -56907692 + RodERV21-int LTR ERV1 4120 4788 -203 1 1314 709 197 26 7 chr5 95629709 95629862 -56907397 - L1_Mur2 LINE L1 -694 5183 5028 1 1314 2325 218 115 2 chr5 95629865 95630036 -56907223 + Lx5 LINE L1 6443 6627 -423 1 1314 456 0 47 0 chr5 95630036 95630100 -56907159 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1314 2325 218 115 2 chr5 95630100 95630466 -56906793 + Lx5 LINE L1 6628 7040 -10 1 1314 330 307 7 21 chr5 95630509 95630649 -56906610 + Lx6 LINE L1 7211 7348 -112 1 1314 716 176 7 7 chr5 95630649 95630786 -56906473 + MTC-int LTR MaLR 909 1045 -213 1 1314 378 164 82 0 chr5 95631500 95631573 -56905686 - MTC LTR MaLR 0 421 343 1 1314 857 259 46 95 chr5 95631691 95632058 -56905201 + RMER5 LTR ERV1 186 534 0 1 1314 485 339 0 6 chr5 95632380 95632552 -56904707 - B3A SINE B2 -26 172 2 1 1314 30 27 0 0 chr5 95632552 95632589 -56904670 + AT_rich Low_complexity Low_complexity 1 37 0 1 1314 324 138 0 0 chr5 95632687 95632752 -56904507 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1314 207 204 0 20 chr5 95632851 95632901 -56904358 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 1 1314 2808 191 12 41 chr5 95632903 95633470 -56903789 + RLTR31_Mur LTR ERVK 1 551 -2 1 1314 1868 213 34 39 chr5 95633471 95634342 -56902917 + RMER3D-int LTR ERVK 1 1386 -1456 1 1314 5151 209 83 52 chr5 95634395 95635870 -56901389 + RMER3D-int LTR ERVK 388 2841 -1 1 1314 615 154 7 117 chr5 95635871 95636025 -56901234 + RLTR31_Mur LTR ERVK 1 137 -416 1 1314 552 244 60 161 chr5 95636034 95636400 -56900859 + L1VL1 LINE L1 29 357 -6065 1 1314 396 301 19 6 chr5 95636481 95636638 -56900621 + L1Md_F LINE L1 578 736 -5783 1 1314 1492 211 19 0 chr5 95636617 95636935 -56900324 + L1Md_F LINE L1 628 951 -5568 1 1314 1965 203 150 18 chr5 95636931 95637432 -56899827 - L1VL2 LINE L1 -5674 661 95 1 1314 849 241 126 54 chr5 95637537 95637724 -56899535 - MTEb LTR MaLR -21 358 168 1 1314 3004 84 43 0 chr5 95637724 95638118 -56899141 - RLTR10A LTR ERVK 0 411 1 1 1314 849 241 126 54 chr5 95638118 95638263 -56898996 - MTEb LTR MaLR -212 167 2 1 1314 3621 46 30 11 chr5 95638271 95638620 -56898639 + MT2C_Mm LTR ERVL 1 363 -112 2 1314 4541 23 0 0 chr5 95638620 95639102 -56898157 - LTRIS_Mm LTR ERV1 0 482 1 2 1314 3621 46 30 11 chr5 95639102 95639218 -56898041 + MT2C_Mm LTR ERVL 364 475 0 2 1314 375 272 71 29 chr5 95639577 95639717 -56897542 + B1_Mm SINE Alu 2 147 0 2 1314 711 309 82 44 chr5 95639751 95640093 -56897166 + MTEa LTR MaLR 5 359 -20 2 1314 959 243 35 16 chr5 95640596 95640631 -56896628 + L1_Rod LINE L1 5586 5618 -229 2 1314 3373 82 0 2 chr5 95640631 95641048 -56896211 - L1_Mus1 LINE L1 0 6567 6152 2 1314 3615 64 7 0 chr5 95641048 95641502 -56895757 + L1Md_F2 LINE L1 5655 6111 -471 2 1314 597 246 54 11 chr5 95641522 95641707 -56895552 + RMER5 LTR ERV1 331 523 -11 2 1314 183 130 36 18 chr5 95641707 95641762 -56895497 + T-rich Low_complexity Low_complexity 1 56 0 2 1314 433 306 33 41 chr5 95641912 95642154 -56895105 - Lx9 LINE L1 -127 7517 7278 2 1314 3075 68 8 35 chr5 95642439 95642838 -56894421 + RLTR10 LTR ERVK 1 388 -2 2 1314 542 285 29 0 chr5 95642901 95643038 -56894221 - B1F SINE Alu -7 142 2 2 1314 433 287 115 25 chr5 95643128 95643328 -56893931 - ID_B1 SINE B4 -2 222 5 2 1314 183 167 0 0 chr5 95643505 95643547 -56893712 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1314 1001 140 79 0 chr5 95643572 95643736 -56893523 + MTC LTR MaLR 12 188 -233 2 1314 2685 225 93 76 chr5 95643769 95644713 -56892546 + MT-int LTR MaLR 4 963 -135 2 1314 588 297 50 41 chr5 95644722 95644943 -56892316 - Lx6 LINE L1 -26 7434 7212 2 1314 11753 220 88 51 chr5 95644965 95647014 -56890245 - Lx5 LINE L1 -2 7048 4864 2 1314 183 42 0 0 chr5 95647014 95647038 -56890221 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1314 1314 35 0 0 chr5 95647038 95647182 -56890077 - B1_Mm SINE Alu -2 145 2 2 1314 11753 189 40 99 chr5 95647182 95650021 -56887238 - Lx5 LINE L1 -1014 4863 521 2 1314 7163 39 2 0 chr5 95650510 95651314 -56885945 - L1Md_T LINE L1 0 6582 5777 2 1314 276 252 20 10 chr5 95651315 95651415 -56885844 - L1VL1 LINE L1 -6321 101 1 2 1314 815 201 28 7 chr5 95651421 95651566 -56885693 - B1_Mur3 SINE Alu -1 148 1 2 1314 509 275 28 7 chr5 95651574 95651717 -56885542 + Lx7 LINE L1 7548 7693 -3 2 1314 482 255 14 32 chr5 95651735 95651929 -56885330 + B3 SINE B2 1 186 -9 2 1314 583 257 200 6 chr5 95651964 95652144 -56885115 - B3 SINE B2 -1 215 1 2 1314 2660 139 8 171 chr5 95652481 95653107 -56884152 + RMER2 LTR ERV1 44 567 0 2 1314 1957 169 20 5 chr5 95653839 95654248 -56883011 - MusHAL1 LINE L1 -636 2076 1662 2 1314 279 71 0 0 chr5 95654248 95654290 -56882969 + (T)n Simple_repeat Simple_repeat 1 42 0 2 1314 671 221 35 61 chr5 95654322 95654520 -56882739 - RMER13A LTR ERVK -570 290 98 2 1314 356 179 0 15 chr5 95655143 95655211 -56882048 - RMER17A-int LTR ERVK -518 1210 1144 2 1314 246 185 19 0 chr5 95655307 95655361 -56881898 + T-rich Low_complexity Low_complexity 2 56 0 2 1314 39652 33 2 7 chr5 95655376 95661390 -56875869 - L1Md_T LINE L1 -1 6581 606 2 1314 22 0 0 0 chr5 95661506 95661528 -56875731 + AT_rich Low_complexity Low_complexity 1 22 0 2 1314 333 276 30 30 chr5 95662127 95662258 -56875001 + MuRRS4-int LTR ERV1 1302 1432 -3631 2 1314 455 325 63 14 chr5 95662968 95663298 -56873961 + MURVY-int LTR ERV1 4019 4360 -3241 2 1314 1241 286 58 14 chr5 95663575 95664011 -56873248 + MuRRS4-int LTR ERV1 3556 3954 -1109 2 1314 3086 142 65 19 chr5 95664442 95664979 -56872280 + RMER2 LTR ERV1 1 562 -5 2 1314 2779 146 82 14 chr5 95665086 95665587 -56871672 - RLTR33 LTR ERVK -143 535 1 2 1314 269 210 148 0 chr5 95665824 95665905 -56871354 - RSINE1 SINE B4 -69 96 4 2 1314 701 186 32 58 chr5 95665963 95666117 -56871142 - B1_Mur4 SINE Alu 0 150 1 2 1314 276 311 73 36 chr5 95666151 95666288 -56870971 - B1_Mur3 SINE Alu -7 142 1 2 1314 323 385 0 0 chr5 95666297 95666427 -56870832 - B1_Mur1 SINE Alu -8 141 12 2 1314 472 283 84 28 chr5 95666459 95666601 -56870658 - B3 SINE B2 -7 209 60 2 1314 217 346 76 30 chr5 95666762 95666893 -56870366 - B1F SINE Alu 0 149 13 2 1314 475 301 97 17 chr5 95666796 95666972 -56870287 - ID_B1 SINE B4 -30 194 5 2 1314 235 295 15 145 chr5 95667226 95667357 -56869902 + PB1D7 SINE Alu 3 116 -4 2 1314 272 216 38 29 chr5 95668263 95668368 -56868891 + T-rich Low_complexity Low_complexity 4 109 0 2 1314 254 233 0 40 chr5 95668390 95668466 -56868793 - Lx3B LINE L1 0 6973 6901 2 1314 774 120 43 56 chr5 95668513 95668701 -56868558 - Lx LINE L1 -15 6639 6402 2 1314 3005 180 70 7 chr5 95668702 95669285 -56867974 - Lx2B LINE L1 -42 6958 6339 2 1314 189 0 0 0 chr5 95669287 95669308 -56867951 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1314 6950 104 9 2 chr5 95669331 95670526 -56866733 - L1_Mus1 LINE L1 0 6567 5363 2 1314 1172 84 0 14 chr5 95670526 95670671 -56866588 - B1_Mus1 SINE Alu -5 143 1 2 1314 500 233 12 0 chr5 95670673 95670799 -56866460 - Lx2B LINE L1 -644 6353 6223 2 1314 3872 144 26 35 chr5 95670827 95671570 -56865689 - RMER17A LTR ERVK -15 736 1 2 1314 7379 76 6 0 chr5 95671639 95672594 -56864665 - L1Md_F2 LINE L1 0 6582 5622 2 1314 9642 115 20 26 chr5 95672594 95674106 -56863153 + MMETn-int LTR ERVK 3342 4844 0 2 1314 2008 138 9 51 chr5 95674106 95674442 -56862817 + RLTRETN_Mm LTR ERVK 1 322 0 2 1314 31785 110 4 3 chr5 95674442 95679626 -56857633 - L1Md_F2 LINE L1 -262 5621 486 2 1314 6637 73 1 6 chr5 95681668 95682526 -56854733 + L1Md_F2 LINE L1 4732 5585 -298 2 164 8128 63 18 0 chr5 95682527 95683505 -56853754 + L1Md_F2 LINE L1 5587 6582 0 2 1315 504 272 63 29 chr5 95684404 95684578 -56852681 + B3A SINE B2 6 185 -13 2 1315 595 261 0 23 chr5 95684897 95685030 -56852229 - B2_Mm2 SINE B2 -64 131 2 2 1315 189 0 0 0 chr5 95685173 95685194 -56852065 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1315 3892 243 11 22 chr5 95685983 95686899 -56850360 - Lx5 LINE L1 -1 7049 6144 2 1315 4010 99 2 2 chr5 95686920 95687475 -56849784 - L1_Mur1 LINE L1 -845 5041 4487 2 1315 1443 134 5 0 chr5 95687471 95687688 -56849571 - L1_Mus4 LINE L1 -232 6404 6187 2 1315 713 254 124 76 chr5 95687687 95687977 -56849282 - L1_Mur1 LINE L1 -6668 314 11 2 1315 5422 57 12 1 chr5 95688003 95688650 -56848609 - L1Md_F3 LINE L1 0 6584 5931 2 1315 6048 80 27 29 chr5 95688649 95689457 -56847802 - L1_Mus1 LINE L1 -1 6566 5760 2 1315 7487 192 57 11 chr5 95689459 95690340 -56846919 - L1_Mur2 LINE L1 -2894 2983 2049 2 1315 360 111 0 0 chr5 95690340 95690394 -56846865 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1315 7487 188 62 10 chr5 95690394 95691444 -56845815 - L1_Mur2 LINE L1 -3829 2048 901 2 1315 442 227 65 75 chr5 95691688 95691888 -56845371 + MTC-int LTR MaLR 1055 1252 -6 2 1315 1588 228 92 5 chr5 95691893 95692273 -56844986 + MTC LTR MaLR 1 413 -8 2 1315 212 154 19 0 chr5 95692276 95692328 -56844931 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1315 387 356 68 0 chr5 95692337 95692455 -56844804 - B1_Mur1 SINE Alu -21 128 3 2 1315 1269 231 120 76 chr5 95693737 95693919 -56843340 - RLTR21 LTR ERVK -136 1436 1225 2 1315 360 0 0 0 chr5 95693919 95693959 -56843300 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1315 1269 228 150 75 chr5 95693959 95694422 -56842837 - RLTR21 LTR ERVK -266 1306 806 2 1315 28 29 0 0 chr5 95694461 95694496 -56842763 + AT_rich Low_complexity Low_complexity 1 35 0 2 1315 902 183 20 15 chr5 95694760 95695002 -56842257 - L1_Mur1 LINE L1 -2510 3367 3125 2 1315 641 171 0 15 chr5 95695002 95695133 -56842126 - Lx LINE L1 -2 6652 6524 2 1315 1239 69 7 0 chr5 95695389 95695534 -56841725 - B1_Mm SINE Alu 0 147 2 2 1315 221 365 0 13 chr5 95696215 95696290 -56840969 + ID4_ SINE ID 8 81 -2 2 1315 189 74 0 0 chr5 95698838 95698865 -56838394 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1315 1045 113 7 0 chr5 95698871 95699012 -56838247 - B1_Mus1 SINE Alu -5 143 2 2 1315 1498 73 5 10 chr5 95700894 95701087 -56836172 + B2_Mm1t SINE B2 1 192 -1 2 1315 262 328 3 78 chr5 95702101 95702219 -56835040 - PB1D7 SINE Alu -15 112 1 2 1315 350 340 94 25 chr5 95702470 95702672 -56834587 + ID_B1 SINE B4 1 216 -8 2 1315 510 301 83 0 chr5 95702791 95702984 -56834275 + B3 SINE B2 2 210 -6 2 1315 230 380 7 14 chr5 95703008 95703152 -56834107 + B1_Mur1 SINE Alu 3 145 -4 2 1315 591 211 41 21 chr5 95703155 95703300 -56833959 + B1_Mus1 SINE Alu 1 148 0 2 1315 344 295 21 64 chr5 95703329 95703470 -56833789 + B1_Mm SINE Alu 11 145 -2 2 1315 182 128 26 0 chr5 95703471 95703510 -56833749 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2 1315 285 184 0 0 chr5 95703563 95703612 -56833647 + RSINE1 SINE B4 3 51 -114 2 1315 975 97 12 49 chr5 95704179 95704342 -56832917 - L1_Mus3 LINE L1 -7 6631 6475 2 1315 1363 152 4 51 chr5 95704342 95704598 -56832661 + L1_Mus4 LINE L1 5891 6134 -502 2 1315 268 333 11 0 chr5 95706099 95706186 -56831073 - B3 SINE B2 -128 88 1 2 1315 672 229 7 0 chr5 95706203 95706347 -56830912 - Lx7 LINE L1 -2 7694 7550 2 1315 288 272 133 23 chr5 95706358 95706486 -56830773 + B1F2 SINE Alu 7 148 -1 2 1315 711 283 73 86 chr5 95706630 95706869 -56830390 - Lx7 LINE L1 -229 7467 7227 2 1315 1137 110 0 0 chr5 95706869 95707015 -56830244 + B1_Mus1 SINE Alu 3 148 0 2 1315 711 283 73 86 chr5 95707015 95707216 -56830043 - Lx7 LINE L1 -470 7226 7033 2 1315 1010 223 9 5 chr5 95707239 95707455 -56829804 - L1_Mur2 LINE L1 -207 5670 5454 2 1315 531 0 0 0 chr5 95708305 95708364 -56828895 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1315 3512 210 65 1 chr5 95708432 95709175 -56828084 - Lx2B LINE L1 -1 6999 6210 2 1315 367 279 29 99 chr5 95712648 95712819 -56824440 + RMER10B LTR ERVL 228 386 -12 2 1315 475 316 41 6 chr5 95712794 95712963 -56824296 + B3A SINE B2 6 180 -18 2 1315 390 329 10 0 chr5 95713276 95713402 -56823857 - B2_Mm2 SINE B2 -67 149 13 3 1315 28 29 0 0 chr5 95713910 95713945 -56823314 + AT_rich Low_complexity Low_complexity 1 35 0 3 1315 6143 239 20 24 chr5 95714353 95714803 -56822456 - Lx5 LINE L1 0 7050 6622 3 1315 1388 236 150 52 chr5 95714803 95715209 -56822050 - RLTR41 LTR ERV1 0 446 1 3 1315 6143 234 24 22 chr5 95715209 95716778 -56820481 - Lx5 LINE L1 -429 6621 5027 3 1315 1728 268 107 17 chr5 95716780 95717322 -56819937 + Lx5 LINE L1 6443 7033 -17 3 1315 332 157 0 0 chr5 95717340 95717391 -56819868 - Lx4B LINE L1 -541 6517 6467 3 1315 2980 76 0 0 chr5 95717395 95717777 -56819482 + L1_Mm LINE L1 4757 5138 -745 3 1315 7924 50 7 24 chr5 95717811 95718961 -56818298 - L1Md_F2 LINE L1 0 6582 5453 3 1315 4907 76 3 11 chr5 95718958 95719619 -56817640 + L1Md_F2 LINE L1 4800 5455 -428 3 1315 600 199 35 7 chr5 95719611 95719753 -56817506 - L1_Mur2 LINE L1 -684 5193 5048 3 1315 408 247 10 0 chr5 95719825 95719922 -56817337 + MTC-int LTR MaLR 909 1006 -252 3 1315 216 97 0 0 chr5 95720020 95720051 -56817208 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 3 1315 5071 120 10 0 chr5 95720060 95720769 -56816490 - L1_Mus3 LINE L1 -9 6629 5914 3 1315 225 240 29 9 chr5 95720885 95720990 -56816269 + (TA)n Simple_repeat Simple_repeat 2 108 0 3 1315 407 151 114 0 chr5 95721308 95721400 -56815859 - MTC LTR MaLR 0 421 268 3 1315 335 247 52 0 chr5 95721426 95721503 -56815756 - Lx5 LINE L1 -170 6880 6800 3 1315 2039 177 70 13 chr5 95721530 95721913 -56815346 + RLTR9E LTR ERVK 5 409 0 3 1315 566 147 29 29 chr5 95721917 95722022 -56815237 - MTC LTR MaLR -107 314 210 3 1315 1630 229 24 13 chr5 95721997 95722374 -56814885 - MTC-int LTR MaLR -451 807 427 3 1315 1352 261 60 27 chr5 95722487 95722889 -56814370 + MTD LTR MaLR 5 419 0 3 1315 277 229 86 0 chr5 95722906 95722976 -56814283 - B3 SINE B2 -135 81 6 3 1315 417 275 42 28 chr5 95722989 95723131 -56814128 - MTC LTR MaLR -228 146 3 3 1315 749 52 0 0 chr5 95723927 95724023 -56813236 + B1_Mm SINE Alu 52 147 0 3 1315 406 301 61 29 chr5 95724025 95724452 -56812807 + L1MA4 LINE L1 5476 5927 -373 3 1315 308 160 80 0 chr5 95724820 95724895 -56812364 - Lx9 LINE L1 -1 7643 7563 3 1315 765 22 0 0 chr5 95724901 95724992 -56812267 + (CA)n Simple_repeat Simple_repeat 2 92 0 3 1315 314 285 33 35 chr5 95725142 95725374 -56811885 + L1VL1 LINE L1 255 485 -5933 3 1315 358 276 16 8 chr5 95725397 95725525 -56811734 + L1_Mus1 LINE L1 675 803 -5813 3 1315 27746 123 14 16 chr5 95725531 95731397 -56805862 + L1_Mus1 LINE L1 723 6567 0 3 1315 556 234 145 15 chr5 95731887 95732087 -56805172 - URR1A DNA MER1_type 0 226 1 3 1315 1046 145 6 0 chr5 95732160 95732319 -56804940 + B2_Mm1a SINE B2 1 160 -33 3 1315 180 0 0 0 chr5 95732319 95732339 -56804920 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 3 1315 5858 117 28 2 chr5 95732350 95733304 -56803955 + L1_Mm LINE L1 4272 5250 -633 3 1315 1205 286 36 93 chr5 95733925 95734484 -56802775 + RMER5 LTR ERV1 3 529 -5 3 1315 229 260 0 14 chr5 95734674 95734748 -56802511 - Lx9 LINE L1 -173 7471 7399 3 1315 513 277 29 0 chr5 95735225 95735362 -56801897 - B1F SINE Alu -7 142 2 3 1315 280 314 19 29 chr5 95735463 95735568 -56801691 - ID_B1 SINE B4 -11 213 110 3 1315 477 34 0 0 chr5 95735834 95735893 -56801366 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1315 1165 144 6 0 chr5 95735897 95736078 -56801181 + MTC LTR MaLR 11 192 -229 3 1315 2693 225 90 75 chr5 95736108 95736853 -56800406 + MT-int LTR MaLR 4 801 -297 3 1315 4386 8 0 0 chr5 95736853 95737335 -56799924 + LTRIS_Mm LTR ERV1 1 482 0 3 1315 2693 225 90 75 chr5 95737335 95737544 -56799715 + MT-int LTR MaLR 802 972 -126 3 1315 265 294 31 61 chr5 95737553 95737716 -56799543 - Lx7 LINE L1 -23 7673 7516 3 1315 11849 226 75 78 chr5 95737783 95739624 -56797635 - Lx5 LINE L1 0 7050 5098 3 1315 800 94 12 0 chr5 95739624 95739757 -56797502 - B1_Mm SINE Alu 0 149 10 3 1315 11849 226 75 78 chr5 95739757 95739987 -56797272 - Lx5 LINE L1 0 5097 4852 3 1315 213 39 0 0 chr5 95739987 95740013 -56797246 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 3 1315 11849 195 52 146 chr5 95740013 95740212 -56797047 - Lx5 LINE L1 -1026 4851 4624 3 1315 2715 83 0 3 chr5 95740212 95740576 -56796683 - L1_Mus1 LINE L1 0 6567 6205 3 1315 11849 195 52 146 chr5 95740576 95742607 -56794652 - Lx5 LINE L1 -1254 4623 2611 3 1315 1319 171 55 73 chr5 95742607 95742935 -56794324 - RLTRETN_Mm LTR ERVK 0 322 1 3 1315 11849 195 52 146 chr5 95742935 95743829 -56793430 - Lx5 LINE L1 -1254 2610 1723 3 1315 2126 164 60 7 chr5 95743880 95744329 -56792930 - L1_Mur2 LINE L1 -906 4971 4499 3 1315 3387 197 46 0 chr5 95744796 95745562 -56791697 - L1_Mur2 LINE L1 -1378 4499 3699 3 1315 235 234 30 30 chr5 95745562 95745628 -56791631 - RLTR9A LTR ERVK -296 72 7 3 1315 366 37 34 68 chr5 95745697 95745785 -56791474 + (TTTTTG)n Simple_repeat Simple_repeat 6 90 0 3 1315 394 286 16 6 chr5 95746171 95746354 -56790905 - RLTR6-int LTR ERV1 -207 7571 7387 3 1315 779 152 7 0 chr5 95746349 95746487 -56790772 - RMER16-int LTR ERVK -1068 4338 4200 3 1315 3642 148 44 39 chr5 95746487 95747232 -56790027 - RMER17D LTR ERVK 0 889 141 3 1315 1493 174 92 0 chr5 95747239 95747532 -56789727 - IAPEY3_LTR LTR ERVK -12 320 1 3 1315 1248 182 61 20 chr5 95747533 95747875 -56789384 - IAPEz-int LTR ERVK -1 6480 6125 3 1315 3658 109 29 25 chr5 95747892 95748158 -56789101 - IAPEY3-int LTR ERVK -342 7338 7071 3 1315 4239 34 0 0 chr5 95748158 95748654 -56788605 + L1Md_T LINE L1 6087 6582 0 3 1315 3658 109 29 25 chr5 95748654 95748981 -56788278 - IAPEY3-int LTR ERVK -610 7070 6743 3 1315 3041 102 4 9 chr5 95748971 95749427 -56787832 - IAPEY3-int LTR ERVK -1367 6214 5761 3 1315 3126 93 0 16 chr5 95749418 95749865 -56787394 - IAPEY3-int LTR ERVK -1939 5642 5203 3 1315 795 76 17 8 chr5 95750142 95750261 -56786998 - IAPEY3-int LTR ERVK -2932 4649 4530 3 1315 428 188 19 34 chr5 95750277 95750400 -56786859 - MMETn-int LTR ERVK -2380 2464 2357 3 1315 1912 137 111 5 chr5 95750409 95750993 -56786266 - ETnERV2-int LTR ERVK -3142 4264 3567 3 1315 577 219 0 0 chr5 95751019 95751138 -56786121 - ETnERV2-int LTR ERVK -4653 2753 2635 3 1315 291 267 0 55 chr5 95751150 95751241 -56786018 - ETnERV2-int LTR ERVK -4867 2539 2454 3 1315 280 310 88 0 chr5 95751254 95751367 -56785892 - RMER16-int LTR ERVK -5077 1060 938 3 1315 1464 195 93 68 chr5 95751372 95751886 -56785373 - RMER16-int LTR ERVK -4760 646 251 3 1315 335 144 0 103 chr5 95751997 95752113 -56785146 - MMERVK10C-int LTR ERVK -6629 952 849 3 1315 5276 68 16 15 chr5 95752094 95752849 -56784410 - IAPLTR4_I LTR ERVK -704 766 11 3 1315 1440 178 92 0 chr5 95752849 95753142 -56784117 - IAPEY3_LTR LTR ERVK -12 320 1 3 1315 411 57 0 0 chr5 95753142 95753195 -56784064 - RMER17D2 LTR ERVK -659 150 98 3 1315 21401 61 3 2 chr5 95753205 95756870 -56780389 - L1Md_F3 LINE L1 -8 6576 2909 3 1315 714 161 0 9 chr5 95756870 95756983 -56780276 - RMER17D2 LTR ERVK -697 112 1 3 1315 676 108 8 62 chr5 95756983 95757111 -56780148 - RMER16-int LTR ERVK -1207 4199 4079 3 1315 3910 131 50 92 chr5 95757111 95757798 -56779461 - RMER16-int LTR ERVK -3017 2389 1677 3 1315 875 102 0 149 chr5 95757798 95757959 -56779300 + B1_Mm SINE Alu 1 137 -10 3 1315 3910 141 47 85 chr5 95757959 95758144 -56779115 - RMER16-int LTR ERVK -3730 1676 1566 3 1315 278 291 15 30 chr5 95758184 95758315 -56778944 - RMER16-int LTR ERVK -3812 2355 2227 3 1315 552 242 28 131 chr5 95758424 95758676 -56778583 - ETnERV2-int LTR ERVK -4859 2547 2322 3 1315 298 294 6 150 chr5 95758695 95758855 -56778404 - ETnERV2-int LTR ERVK -5075 2331 2195 3 1315 252 208 0 0 chr5 95758827 95758875 -56778384 - ETnERV2-int LTR ERVK -1730 1584 1537 3 1315 482 227 8 15 chr5 95759060 95759190 -56778069 - ETnERV2-int LTR ERVK -3822 1584 1456 3 1315 6945 83 6 1 chr5 95759192 95760483 -56776776 - L1Md_F2 LINE L1 0 6582 5282 3 1315 240 162 0 0 chr5 95760883 95760920 -56776339 - RMER10A LTR ERVL -394 48 12 3 1315 937 241 94 7 chr5 95762003 95762312 -56774947 - L1_Mur2 LINE L1 -893 4984 4649 3 1315 1734 197 34 0 chr5 95762307 95762663 -56774596 - Lx2B LINE L1 -393 6607 6240 3 1315 253 317 53 80 chr5 95762754 95762867 -56774392 - PB1D7 SINE Alu -8 112 3 3 1315 1504 189 51 69 chr5 95762995 95763220 -56774039 + RMER16 LTR ERVK 1 320 -213 3 1315 2127 164 30 0 chr5 95763220 95763616 -56773643 - Lx LINE L1 -7 6647 6240 3 1315 1504 210 75 36 chr5 95763616 95763830 -56773429 + RMER16 LTR ERVK 321 533 0 3 1315 1093 237 86 24 chr5 95764181 95764518 -56772741 + Lx7 LINE L1 7010 7367 -329 3 1315 189 0 0 0 chr5 95764518 95764539 -56772720 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1315 1804 234 26 7 chr5 95764539 95764956 -56772303 - Lx4A LINE L1 0 7058 6634 3 1315 325 262 0 54 chr5 95764951 95765100 -56772159 + Lx7 LINE L1 7371 7511 -185 3 1315 622 286 7 7 chr5 95765338 95765486 -56771773 - B1_Mus1 SINE Alu 0 148 1 3 1315 268 315 60 23 chr5 95765530 95765663 -56771596 - B1_Mur4 SINE Alu -12 138 1 3 1315 459 341 0 0 chr5 95765672 95765804 -56771455 - B1_Mur1 SINE Alu -8 141 10 3 1315 611 292 0 0 chr5 95765833 95765987 -56771272 - B3 SINE B2 -3 213 60 3 1315 260 345 80 15 chr5 95766158 95766358 -56770901 - ID_B1 SINE B4 -8 216 4 3 1315 258 237 64 118 chr5 95766605 95766715 -56770544 + PB1D7 SINE Alu 3 106 -14 3 1315 351 192 0 55 chr5 95767548 95767658 -56769601 + T-rich Low_complexity Low_complexity 2 105 0 3 1315 308 188 19 47 chr5 95767787 95767893 -56769366 + T-rich Low_complexity Low_complexity 5 107 0 3 1315 246 222 0 36 chr5 95767919 95768003 -56769256 - Lx3B LINE L1 -5 6968 6888 3 1315 1121 82 7 0 chr5 95768015 95768161 -56769098 - B1_Mus1 SINE Alu 0 148 2 3 1315 3782 199 43 3 chr5 95768171 95768935 -56768324 - Lx2B LINE L1 -3 6997 6203 3 1315 31 26 0 0 chr5 95769743 95769781 -56767478 + AT_rich Low_complexity Low_complexity 1 38 0 3 1315 335 298 8 42 chr5 95773202 95773321 -56763938 + RMER10B LTR ERVL 227 341 -57 3 1315 538 278 17 61 chr5 95773746 95773926 -56763333 - B2_Mm2 SINE B2 -22 173 2 3 1315 7381 82 1 0 chr5 95774726 95775752 -56761507 + L1Md_F2 LINE L1 4560 5586 -297 3 1315 7769 64 1 1 chr5 95775752 95776736 -56760523 + L1Md_F2 LINE L1 5587 6570 -12 3 1315 433 311 39 49 chr5 95777517 95777801 -56759458 + RodERV21-int LTR ERV1 745 1025 -3966 3 1315 276 267 40 0 chr5 95778074 95778149 -56759110 + RodERV21-int LTR ERV1 1252 1329 -3662 3 1315 627 256 18 35 chr5 95778194 95778364 -56758895 + RodERV21-int LTR ERV1 1252 1418 -3573 3 1315 456 19 0 0 chr5 95778364 95778417 -56758842 + (TTA)n Simple_repeat Simple_repeat 1 53 0 3 1315 7675 70 1 9 chr5 95778417 95779683 -56757576 - L1Md_F2 LINE L1 -23 6559 5304 3 1315 2495 297 8 20 chr5 95779683 95780432 -56756827 + RodERV21-int LTR ERV1 1410 2149 -2842 3 1315 224 295 0 0 chr5 95781673 95781734 -56755525 + B3 SINE B2 8 68 -148 3 1315 13009 60 2 2 chr5 95781871 95783503 -56753756 + L1Md_F2 LINE L1 3954 5586 -297 3 1315 8065 49 2 14 chr5 95783504 95784511 -56752748 + L1Md_F2 LINE L1 5588 6582 0 3 1315 410 308 0 60 chr5 95784728 95784894 -56752365 - B2_Mm2 SINE B2 -22 173 18 3 1315 6162 237 15 25 chr5 95785853 95786296 -56750963 - Lx5 LINE L1 0 7050 6619 3 1315 1750 223 95 40 chr5 95786296 95786717 -56750542 - RLTR41 LTR ERV1 0 446 3 3 1315 6162 234 52 17 chr5 95786717 95788244 -56749015 - Lx5 LINE L1 -432 6618 5027 3 1315 1558 269 107 14 chr5 95788246 95788762 -56748497 + Lx5 LINE L1 6443 7006 -44 3 1315 3743 239 22 9 chr5 95788794 95790117 -56747142 - Lx5 LINE L1 -543 6507 5160 3 1315 1198 291 41 84 chr5 95790117 95790631 -56746628 + RodERV21-int LTR ERV1 2227 2718 -2273 3 1315 530 337 30 45 chr5 95790799 95791240 -56746019 + RodERV21-int LTR ERV1 3638 4071 -3020 3 1315 306 186 16 53 chr5 95792738 95792845 -56744414 + RodERV21-int LTR ERV1 4830 4949 -2657 3 1315 1097 355 43 59 chr5 95793331 95794195 -56743064 + RodERV21-int LTR ERV1 2869 3718 -1273 3 1315 239 227 15 29 chr5 95794695 95794763 -56742496 + ID4_ SINE ID 5 71 -12 4 1315 932 106 31 18 chr5 95794986 95795149 -56742110 - B2_Mm2 SINE B2 0 195 31 4 1315 1454 74 21 0 chr5 95795149 95795339 -56741920 - B2_Mm2 SINE B2 0 195 2 4 1315 401 0 0 20 chr5 95795373 95795423 -56741836 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 1315 351 125 0 0 chr5 95795438 95795510 -56741749 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1315 180 0 0 0 chr5 95795584 95795604 -56741655 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 4 1315 233 162 0 0 chr5 95795901 95795938 -56741321 - RMER10A LTR ERVL -394 48 12 4 1315 336 284 0 0 chr5 95797766 95797854 -56739405 - B3 SINE B2 -128 88 1 4 1315 612 182 61 0 chr5 95797870 95798002 -56739257 - Lx7 LINE L1 -1 7695 7556 4 1315 345 258 117 0 chr5 95798019 95798139 -56739120 + B1_Mm SINE Alu 1 134 -13 4 1315 7009 108 7 11 chr5 95798203 95799573 -56737686 - L1_Mus1 LINE L1 -1 6566 5206 4 1315 1593 110 0 0 chr5 95799577 95799795 -56737464 + L1Md_F2 LINE L1 6082 6299 -283 4 1315 241 194 206 15 chr5 95799795 95799863 -56737396 + RLTR6_Mm LTR ERV1 1 81 -573 4 1315 1678 138 259 33 chr5 95799903 95800354 -56736905 + RLTR6_Mm LTR ERV1 37 589 -65 4 1315 66690 26 17 6 chr5 95800354 95808055 -56729204 + RLTR6-int LTR ERV1 1 7778 0 4 1315 2096 109 236 48 chr5 95808164 95808625 -56728634 + RLTR6_Mm LTR ERV1 37 584 -70 4 1315 216 294 0 0 chr5 95808981 95809073 -56728186 + T-rich Low_complexity Low_complexity 1 92 0 4 1315 2163 213 167 29 chr5 95809075 95809769 -56727490 - Lx2B LINE L1 -1 6999 6210 4 1316 224 295 0 0 chr5 95814166 95814227 -56723032 + B3 SINE B2 8 68 -148 4 1316 13047 58 2 2 chr5 95814364 95815997 -56721262 + L1Md_F2 LINE L1 3954 5585 -298 4 1316 8180 49 1 7 chr5 95815998 95816998 -56720261 + L1Md_F2 LINE L1 5587 6580 -2 4 1316 396 314 0 60 chr5 95817215 95817381 -56719878 - B2_Mm2 SINE B2 -22 173 18 4 1316 998 282 114 18 chr5 95818338 95818732 -56718527 - Lx5 LINE L1 0 7050 6619 4 1316 1677 221 98 41 chr5 95818734 95819153 -56718106 - RLTR41 LTR ERV1 0 446 4 4 1316 4703 231 34 7 chr5 95819153 95820662 -56716597 - Lx5 LINE L1 -445 6605 5027 4 1316 1527 271 106 19 chr5 95820664 95821183 -56716076 + Lx5 LINE L1 6443 7006 -44 4 1316 3637 236 24 28 chr5 95821215 95822665 -56714594 - Lx5 LINE L1 -543 6507 5044 4 1316 405 172 43 11 chr5 95822734 95822828 -56714431 + MTC-int LTR MaLR 910 1006 -252 4 1316 230 182 0 0 chr5 95823463 95823507 -56713752 - MTEb LTR MaLR 0 419 376 4 1316 927 126 0 0 chr5 95823509 95823644 -56713615 + B1_Mus1 SINE Alu 2 136 -12 4 1316 403 255 49 21 chr5 95823842 95823986 -56713273 + MTD LTR MaLR 272 419 0 4 1316 3691 131 37 65 chr5 95824480 95825327 -56711932 - RMER17D LTR ERVK 0 889 67 4 1316 1515 104 4 9 chr5 95825342 95825574 -56711685 - L1Md_F2 LINE L1 -2 6580 6350 4 1316 643 235 128 15 chr5 95826059 95826262 -56710997 - URR1A DNA MER1_type 0 226 1 4 1316 670 268 139 31 chr5 95826652 95826975 -56710284 - MTEb LTR MaLR -21 358 1 4 1316 400 230 72 29 chr5 95827346 95827485 -56709774 + B1_Mus2 SINE Alu 3 147 0 4 1316 453 340 94 77 chr5 95827517 95827868 -56709391 + MTEa LTR MaLR 3 359 -20 4 1316 330 296 60 38 chr5 95828572 95828755 -56708504 + RMER5 LTR ERV1 13 199 -335 4 1316 396 264 48 48 chr5 95828937 95829124 -56708135 + RMER5 LTR ERV1 331 517 -17 4 1316 369 0 0 0 chr5 95829130 95829171 -56708088 + (TTG)n Simple_repeat Simple_repeat 2 42 0 4 1316 499 268 26 37 chr5 95829471 95829661 -56707598 - B3A SINE B2 0 198 11 4 1316 36 23 0 0 chr5 95829672 95829715 -56707544 + AT_rich Low_complexity Low_complexity 1 43 0 4 1316 348 24 0 0 chr5 95829803 95829844 -56707415 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1316 333 0 0 0 chr5 95829844 95829880 -56707379 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1316 232 325 74 40 chr5 95829985 95830187 -56707072 - ID_B1 SINE B4 -11 213 5 4 1316 223 154 0 0 chr5 95830362 95830401 -56706858 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1316 944 171 16 0 chr5 95830417 95830604 -56706655 + MTC LTR MaLR 11 200 -221 4 1316 2022 246 102 54 chr5 95830632 95831469 -56705790 + MT-int LTR MaLR 4 880 -218 4 1316 3875 103 18 10 chr5 95832053 95832668 -56704591 - MusHAL1 LINE L1 -626 2086 1467 4 1316 1435 157 9 0 chr5 95832692 95832915 -56704344 - L1VL2 LINE L1 -5934 401 177 4 1316 271 196 135 19 chr5 95832916 95833020 -56704239 + MT-int LTR MaLR 996 1111 -147 4 1316 631 293 44 49 chr5 95833025 95833251 -56704008 - Lx6 LINE L1 -28 7432 7208 4 1316 4752 243 101 24 chr5 95833270 95834009 -56703250 - Lx5 LINE L1 0 7050 6286 4 1316 1167 62 7 7 chr5 95834009 95834156 -56703103 + B1_Mm SINE Alu 1 147 0 4 1316 10519 204 57 30 chr5 95834156 95837098 -56700161 - Lx5 LINE L1 -765 6285 3240 4 1316 453 155 0 72 chr5 95837066 95837177 -56700082 - L1_Mus3 LINE L1 0 6638 6536 4 1316 763 208 0 12 chr5 95837180 95837350 -56699909 - MusHAL1 LINE L1 -628 2084 1917 4 1316 558 200 0 8 chr5 95837353 95837484 -56699775 - Lx LINE L1 -1 6653 6524 4 1316 297 336 52 7 chr5 95837548 95837683 -56699576 - ID_B1 SINE B4 0 224 84 4 1316 214 309 168 16 chr5 95837822 95837947 -56699312 + ID_B1 SINE B4 81 224 0 4 1316 35843 76 3 14 chr5 95837983 95844084 -56693175 - L1Md_F2 LINE L1 0 6582 556 4 1316 210 150 0 0 chr5 95844803 95844843 -56692416 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1316 337 331 99 20 chr5 95845239 95845390 -56691869 - B3A SINE B2 -11 187 25 4 1316 229 266 29 86 chr5 95847322 95847392 -56689867 - RLTR19A LTR ERVK -360 136 71 4 1316 391 48 32 0 chr5 95849367 95849429 -56687830 + (CA)n Simple_repeat Simple_repeat 1 64 0 4 1316 226 271 17 0 chr5 95849504 95849563 -56687696 + B1_Mur3 SINE Alu 85 144 -5 4 1316 680 192 2 9 chr5 95849966 95850106 -56687153 + L1_Mus4 LINE L1 6018 6156 -428 4 1316 273 322 11 0 chr5 95851586 95851673 -56685586 - B3 SINE B2 -128 88 1 4 1316 600 238 10 3 chr5 95851674 95851823 -56685436 - Lx7 LINE L1 -2 7694 7561 4 1316 216 250 138 117 chr5 95851823 95851968 -56685291 + B4 SINE B4 76 223 -69 4 1316 297 268 153 8 chr5 95851845 95851969 -56685290 + B1F2 SINE Alu 7 148 -1 4 1316 869 29 10 0 chr5 95852363 95852467 -56684792 - L1Md_F3 LINE L1 -678 5906 5802 4 1316 2560 48 13 3 chr5 95852469 95852781 -56684478 + L1Md_F3 LINE L1 6256 6570 -14 4 1316 761 235 11 5 chr5 95852815 95852999 -56684260 - L1_Mur2 LINE L1 -240 5637 5453 4 1316 3093 212 21 2 chr5 95853910 95854652 -56682607 - Lx2B LINE L1 -1 6996 6211 4 1316 345 277 30 103 chr5 95858914 95859079 -56678180 + RMER10B LTR ERVL 234 386 -12 4 1316 480 311 42 6 chr5 95859055 95859223 -56678036 + B3A SINE B2 7 180 -18 4 1316 414 335 22 61 chr5 95859489 95859670 -56677589 - B2_Mm2 SINE B2 -21 174 1 4 1316 23 54 0 0 chr5 95860175 95860212 -56677047 + AT_rich Low_complexity Low_complexity 1 37 0 4 1316 6407 230 16 24 chr5 95860616 95861066 -56676193 - Lx5 LINE L1 0 7050 6622 4 1316 1799 204 104 52 chr5 95861066 95861490 -56675769 - RLTR41 LTR ERV1 0 446 1 4 1316 6407 233 19 18 chr5 95861490 95863056 -56674203 - Lx5 LINE L1 -429 6621 5027 4 1316 1739 271 88 6 chr5 95863076 95863566 -56673693 + Lx5 LINE L1 6477 7006 -44 4 1316 336 157 0 0 chr5 95863612 95863663 -56673596 - Lx5 LINE L1 -541 6517 6467 4 1316 6158 90 6 1 chr5 95863668 95864493 -56672766 + L1Md_F2 LINE L1 4758 5586 -297 4 1316 8215 70 1 0 chr5 95864494 95865487 -56671772 + L1Md_F2 LINE L1 5588 6581 -1 4 1316 3490 233 38 3 chr5 95865533 95866872 -56670387 - Lx5 LINE L1 -599 6451 5054 4 1316 388 240 10 0 chr5 95866951 95867047 -56670212 + MTC-int LTR MaLR 910 1006 -252 4 1316 261 83 0 0 chr5 95867145 95867181 -56670078 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 4 1316 4996 132 21 0 chr5 95867190 95867919 -56669340 - L1_Mus3 LINE L1 -9 6629 5886 4 1316 213 39 0 0 chr5 95868021 95868047 -56669212 + (TA)n Simple_repeat Simple_repeat 2 27 0 4 1316 356 133 118 13 chr5 95868385 95868461 -56668798 - MTC LTR MaLR 0 421 338 4 1316 387 212 50 0 chr5 95868500 95868580 -56668679 - Lx5 LINE L1 -167 6883 6800 4 1316 1236 160 95 21 chr5 95868619 95868862 -56668397 + RLTR9E LTR ERVK 7 267 -142 4 1316 618 29 0 0 chr5 95868862 95868932 -56668327 + L1Md_F3 LINE L1 5517 5586 -297 4 1316 8534 44 1 5 chr5 95868932 95869932 -56667327 + L1Md_F3 LINE L1 5587 6582 -2 4 1316 573 231 23 8 chr5 95870017 95870148 -56667111 + RLTR9E LTR ERVK 277 409 0 4 1316 550 172 10 0 chr5 95870148 95870242 -56667017 - MTC LTR MaLR -103 318 224 4 1316 1609 234 35 5 chr5 95870232 95870602 -56666657 - MTC-int LTR MaLR -451 807 427 4 1316 379 204 51 85 chr5 95870715 95870833 -56666426 + MTD LTR MaLR 5 118 -301 4 1316 363 227 41 10 chr5 95870834 95870932 -56666327 + MTD LTR MaLR 319 419 0 4 1316 318 200 86 0 chr5 95870949 95871019 -56666240 - B3 SINE B2 -135 81 6 4 1316 383 322 7 14 chr5 95871031 95871176 -56666083 - MTC LTR MaLR -228 146 3 4 1316 27525 120 10 4 chr5 95871304 95874611 -56662648 + L1_Mus1 LINE L1 1671 5014 -869 4 1316 3456 3 54 0 chr5 95874611 95874984 -56662275 + L1Md_A LINE L1 6190 6582 0 4 1316 27525 91 7 2 chr5 95874984 95876549 -56660710 + L1_Mus1 LINE L1 5015 6654 0 4 1316 888 214 124 0 chr5 95877071 95877272 -56659987 - URR1A DNA MER1_type 0 226 1 4 1316 5096 112 21 3 chr5 95877572 95878278 -56658981 - L1_Mus3 LINE L1 -4 6634 5916 4 1316 289 79 0 0 chr5 95878278 95878316 -56658943 - PB1D9 SINE Alu -65 55 18 4 1316 260 214 18 18 chr5 95878316 95878335 -56658924 - ID_B1 SINE B4 -88 136 80 4 1316 4889 107 26 1 chr5 95878336 95879110 -56658149 - L1VL1 LINE L1 -1946 1752 964 4 1316 1436 62 56 0 chr5 95879110 95879289 -56657970 - B2_Mm2 SINE B2 -5 190 2 4 1316 3435 153 176 9 chr5 95879289 95879881 -56657378 - L1VL1 LINE L1 -5459 963 246 4 1316 839 237 120 51 chr5 95880036 95880226 -56657033 - MTEb LTR MaLR -21 358 167 4 1316 2854 103 54 0 chr5 95880226 95880616 -56656643 - RLTR10A LTR ERVK 0 411 1 4 1316 839 237 120 51 chr5 95880616 95880759 -56656500 - MTEb LTR MaLR -213 166 2 4 1316 4246 44 0 0 chr5 95880767 95881242 -56656017 + MT2C_Mm LTR ERVL 1 475 0 4 1316 476 222 79 36 chr5 95881603 95881743 -56655516 + B1_Mus2 SINE Alu 2 147 0 4 1316 685 346 51 24 chr5 95881791 95882123 -56655136 + MTEa LTR MaLR 19 359 -20 4 1316 7748 68 3 12 chr5 95882668 95883709 -56653550 - L1_Mus1 LINE L1 -4 6563 5540 5 1316 544 325 22 106 chr5 95883849 95884217 -56653042 + RMER5 LTR ERV1 13 349 -185 5 1316 3237 88 7 0 chr5 95884219 95884628 -56652631 - L1_Mus1 LINE L1 0 6567 6156 5 1316 3653 65 0 0 chr5 95884631 95885089 -56652170 + L1Md_F2 LINE L1 5654 6111 -471 5 1316 582 242 41 46 chr5 95885109 95885304 -56651955 + RMER5 LTR ERV1 331 524 -10 5 1316 180 0 54 54 chr5 95885306 95885343 -56651916 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 5 1316 433 301 34 50 chr5 95885522 95885760 -56651499 - Lx9 LINE L1 -133 7511 7278 5 1316 568 270 29 0 chr5 95886096 95886233 -56651026 - B1F SINE Alu -7 142 2 5 1316 262 325 93 10 chr5 95886338 95886531 -56650728 - ID_B1 SINE B4 -11 213 5 5 1316 221 169 0 17 chr5 95886708 95886758 -56650501 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1316 594 0 0 0 chr5 95886758 95886824 -56650435 + (GA)n Simple_repeat Simple_repeat 1 66 0 5 1316 221 169 0 17 chr5 95886824 95886833 -56650426 + (TG)n Simple_repeat Simple_repeat 2 10 0 5 1316 949 141 86 0 chr5 95886833 95886996 -56650263 + MTC LTR MaLR 12 188 -233 5 1316 2587 231 94 57 chr5 95887029 95887955 -56649304 + MT-int LTR MaLR 4 963 -135 5 1316 560 266 93 42 chr5 95887963 95888179 -56649080 - Lx6 LINE L1 -26 7434 7208 5 1316 15816 199 75 14 chr5 95888200 95892900 -56644359 - Lx5 LINE L1 -2 7048 2055 5 1316 306 50 0 0 chr5 95892900 95892940 -56644319 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1316 15816 188 65 15 chr5 95892940 95893235 -56644024 - Lx5 LINE L1 -3823 2054 1723 5 1316 2563 128 52 9 chr5 95893287 95893746 -56643513 - L1_Mur2 LINE L1 -907 4970 4492 5 1316 2456 180 269 26 chr5 95894208 95894708 -56642551 - L1_Mur2 LINE L1 -1378 4499 3810 5 1316 827 118 79 0 chr5 95894708 95894835 -56642424 - B1_Mus2 SINE Alu -10 137 1 5 1316 2456 180 269 26 chr5 95894835 95895103 -56642156 - L1_Mur2 LINE L1 -2068 3809 3544 5 1316 495 261 202 59 chr5 95895103 95895425 -56641834 - RLTR9A LTR ERVK 0 368 1 5 1316 356 138 0 15 chr5 95895427 95895493 -56641766 - L1_Mur2 LINE L1 -2328 3549 3485 5 1316 1196 192 89 0 chr5 95895499 95895723 -56641536 - ORR1A1 LTR MaLR -68 278 35 5 1316 5836 179 53 18 chr5 95895743 95897114 -56640145 - L1_Mur2 LINE L1 -2443 3434 2015 5 1316 561 200 15 23 chr5 95897115 95897248 -56640011 - MYSERV-int LTR ERVK -1429 7530 7399 5 1316 826 181 32 16 chr5 95897291 95897476 -56639783 - B2_Mm2 SINE B2 -6 189 2 5 1316 346 83 0 0 chr5 95897504 95897552 -56639707 - ORR1A4 LTR MaLR -8 321 274 5 1316 404 266 27 40 chr5 95897561 95897710 -56639549 - RLTR12B LTR ERVK -341 187 41 5 1316 1408 247 43 64 chr5 95897732 95898294 -56638965 - MYSERV-int LTR ERVK 0 6550 6001 5 1316 321 26 0 0 chr5 95898297 95898335 -56638924 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1316 999 166 33 6 chr5 95898445 95898627 -56638632 - B2_Mm2 SINE B2 -8 187 1 5 1316 1085 181 27 27 chr5 95898627 95898883 -56638376 - L1_Mur2 LINE L1 -3864 2013 1758 5 1316 5734 101 58 16 chr5 95898883 95899940 -56637319 + L1VL2 LINE L1 38 1127 -2488 5 1316 370 200 91 77 chr5 95900054 95900201 -56637058 - RLTR13D3 LTR ERVK 0 1114 889 5 1316 504 0 0 0 chr5 95901062 95901118 -56636141 + (TTTC)n Simple_repeat Simple_repeat 3 58 0 5 1316 272 26 0 0 chr5 95901118 95901157 -56636102 - Lx LINE L1 -16 6638 6600 5 1316 5603 135 8 3 chr5 95901157 95902253 -56635006 - Lx LINE L1 -141 6513 5410 5 1316 2435 148 47 40 chr5 95902256 95902728 -56634531 + MT2C_Mm LTR ERVL 1 475 0 5 1316 1114 244 16 29 chr5 95902729 95903104 -56634155 - L1_Mur2 LINE L1 -859 5018 4649 5 1316 1900 161 20 0 chr5 95903099 95903441 -56633818 - Lx2B LINE L1 -393 6607 6259 5 1316 236 348 58 42 chr5 95903545 95903665 -56633594 - PB1 SINE Alu -5 122 1 5 1316 1202 188 22 102 chr5 95903789 95903885 -56633374 + RMER16 LTR ERVK 1 130 -403 5 1316 988 89 7 0 chr5 95903885 95904020 -56633239 + B1_Mm SINE Alu 2 137 -10 5 1316 1202 244 113 79 chr5 95904020 95904206 -56633053 + RMER16 LTR ERVK 131 322 -211 5 1316 2086 171 15 29 chr5 95904206 95904617 -56632642 - Lx LINE L1 -7 6647 6243 5 1316 1202 244 113 79 chr5 95904617 95904816 -56632443 + RMER16 LTR ERVK 323 532 -1 5 1316 486 91 0 0 chr5 95905420 95905497 -56631762 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1316 1629 248 59 9 chr5 95905497 95905952 -56631307 + Lx7 LINE L1 6902 7379 -317 5 1316 1597 249 19 6 chr5 95905974 95906394 -56630865 - Lx4A LINE L1 -1 7057 6630 5 1316 367 197 14 62 chr5 95906389 95906535 -56630724 + Lx7 LINE L1 7373 7511 -185 5 1316 309 221 143 0 chr5 95906634 95906711 -56630548 - RSINE1 SINE B4 -69 96 9 5 1316 493 137 22 27 chr5 95906744 95906839 -56630420 + B1_Mus2 SINE Alu 1 133 -14 5 1316 238 151 0 171 chr5 95906772 95906860 -56630399 + ID_B1 SINE B4 149 221 -3 5 1316 548 234 22 14 chr5 95906896 95907048 -56630211 - B1_Mur4 SINE Alu 0 150 1 5 1316 388 268 53 60 chr5 95907076 95907227 -56630032 - B1_Mur4 SINE Alu 0 150 1 5 1316 497 319 7 0 chr5 95907236 95907371 -56629888 - B1_Mur1 SINE Alu -8 141 6 5 1316 898 129 7 39 chr5 95907400 95907553 -56629706 + B1_Mus1 SINE Alu 1 148 0 5 1316 603 298 0 0 chr5 95907561 95907712 -56629547 - B3 SINE B2 -5 211 61 5 1316 530 308 77 6 chr5 95907900 95908083 -56629176 - ID_B1 SINE B4 -25 199 4 5 1316 280 263 9 92 chr5 95908336 95908445 -56628814 + PB1D7 SINE Alu 3 102 -18 5 1316 348 24 0 0 chr5 95909107 95909148 -56628111 + (TTTTTG)n Simple_repeat Simple_repeat 6 46 0 5 1316 220 78 61 30 chr5 95909406 95909472 -56627787 + (TTG)n Simple_repeat Simple_repeat 2 69 0 5 1316 309 152 68 0 chr5 95909523 95909582 -56627677 - Lx3B LINE L1 -6 6967 6905 5 1316 3019 206 78 5 chr5 95909603 95910337 -56626922 - Lx2B LINE L1 -11 6989 6203 5 1316 459 35 0 0 chr5 95911157 95911214 -56626045 + (TAA)n Simple_repeat Simple_repeat 2 58 0 5 1316 1007 115 0 0 chr5 95911328 95911467 -56625792 + B1_Mus2 SINE Alu 2 140 -7 5 1316 27 0 0 0 chr5 95911468 95911495 -56625764 + AT_rich Low_complexity Low_complexity 1 27 0 5 1316 1095 91 0 0 chr5 95912737 95912880 -56624379 - B1_Mus2 SINE Alu -4 143 1 5 1316 4850 52 2 29 chr5 95914719 95915609 -56621650 - L1Md_Gf LINE L1 -4397 1489 517 5 1316 842 50 0 0 chr5 95915609 95915728 -56621531 + L1Md_T LINE L1 6464 6582 0 5 1316 326 279 39 39 chr5 95915858 95915985 -56621274 + RMER10B LTR ERVL 216 342 -56 5 1316 448 311 37 79 chr5 95916010 95916226 -56621033 + B3A SINE B2 6 212 -4 5 1316 797 194 27 64 chr5 95916511 95916731 -56620528 + RMER3D-int LTR ERVK 1998 2209 -633 5 1316 210 150 0 0 chr5 95916741 95916781 -56620478 - B3 SINE B2 -176 40 1 5 1316 1026 279 40 115 chr5 95916796 95916938 -56620321 - Lx7 LINE L1 0 7696 7544 5 1316 486 237 114 0 chr5 95916938 95917069 -56620190 + B1_Mus2 SINE Alu 1 146 -1 5 1316 1026 279 40 115 chr5 95917069 95917151 -56620108 - Lx7 LINE L1 -153 7543 7491 5 1316 1063 109 0 7 chr5 95917151 95917298 -56619961 + B1_Mus2 SINE Alu 1 146 -1 5 1316 1026 279 40 115 chr5 95917298 95917802 -56619457 - Lx7 LINE L1 -206 7490 7022 5 1316 6808 232 28 19 chr5 95917811 95919862 -56617397 - L1_Mur2 LINE L1 -207 5670 3601 5 1316 726 124 0 0 chr5 95919862 95919983 -56617276 + (TAGA)n Simple_repeat Simple_repeat 3 123 0 5 1316 8419 118 13 45 chr5 95920229 95921184 -56616075 - L1_Mus3 LINE L1 -7 6631 5681 5 1316 1170 120 73 5 chr5 95921184 95921376 -56615883 + L1Md_F2 LINE L1 6368 6572 -10 5 1316 1195 49 0 0 chr5 95921382 95921526 -56615733 + B1_Mm SINE Alu 1 144 -3 5 1316 188 35 35 0 chr5 95921526 95921555 -56615704 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1316 8419 155 25 101 chr5 95921555 95922201 -56615058 - L1_Mus3 LINE L1 -203 5680 5116 5 1316 1127 82 0 14 chr5 95922201 95922349 -56614910 - B1_Mus2 SINE Alu 0 147 2 5 1316 8419 155 25 101 chr5 95922349 95922701 -56614558 - L1_Mus3 LINE L1 -768 5115 4735 5 1316 344 22 0 22 chr5 95922701 95922747 -56614512 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 5 1316 8419 155 25 101 chr5 95922747 95923201 -56614058 - L1_Mus3 LINE L1 -1149 4734 4287 5 1316 403 171 0 0 chr5 95923201 95923271 -56613988 - B2_Mm2 SINE B2 -31 164 95 5 1316 8419 155 25 101 chr5 95923271 95923519 -56613740 - L1_Mus3 LINE L1 -1149 4286 4040 5 1316 37909 25 0 8 chr5 95923519 95929512 -56607747 - L1Md_A LINE L1 0 6582 643 5 1316 2349 166 56 10 chr5 95929514 95930018 -56607241 - L1_Mur2 LINE L1 -1833 4044 3518 5 1316 1396 106 4 0 chr5 95930014 95930276 -56606983 - L1VL1 LINE L1 -2544 1154 892 5 1316 806 88 9 0 chr5 95930302 95930416 -56606843 - B1_Mm SINE Alu 0 147 33 5 1316 1002 108 108 0 chr5 95930435 95930602 -56606657 - B2_Mm1a SINE B2 -7 186 2 5 1316 229 146 0 0 chr5 95930602 95930643 -56606616 - L1Md_F LINE L1 -5506 1013 973 5 1316 311 269 29 157 chr5 95930640 95930812 -56606447 + L1VL1 LINE L1 208 357 -6065 5 1316 379 258 59 7 chr5 95930869 95931021 -56606238 + L1_Mus1 LINE L1 644 803 -5813 5 1316 28265 125 10 37 chr5 95931030 95934600 -56602659 + L1_Mus1 LINE L1 726 4208 -1675 5 1316 342 0 0 0 chr5 95934600 95934638 -56602621 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 1316 28265 117 8 11 chr5 95934638 95935939 -56601320 + L1_Mus1 LINE L1 4209 5499 -384 5 1316 1194 68 0 7 chr5 95935939 95936087 -56601172 + B1_Mm SINE Alu 1 147 0 5 1316 28265 68 5 27 chr5 95936087 95937054 -56600205 + L1_Mus1 LINE L1 5500 6431 -136 5 1316 1129 68 7 0 chr5 95937054 95937200 -56600059 - B1_Mus2 SINE Alu 0 147 1 5 1316 7206 61 4 29 chr5 95937200 95937348 -56599911 + L1_Mus1 LINE L1 6432 6567 0 5 1316 212 301 68 0 chr5 95937547 95937620 -56599639 - PB1D7 SINE Alu -2 118 41 5 1316 220 167 0 0 chr5 95937712 95937748 -56599511 + B3 SINE B2 2 37 -179 5 1316 326 299 0 0 chr5 95937764 95937851 -56599408 - B3 SINE B2 -129 87 1 5 1316 876 253 26 167 chr5 95937867 95938022 -56599237 - Lx7 LINE L1 -1 7695 7548 5 1316 437 209 153 15 chr5 95938022 95938153 -56599106 + B1F2 SINE Alu 1 149 0 5 1316 876 253 26 167 chr5 95938153 95938303 -56598956 - Lx7 LINE L1 -149 7547 7454 5 1316 180 0 0 0 chr5 95938303 95938323 -56598936 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1316 876 253 26 167 chr5 95938323 95938776 -56598483 - Lx7 LINE L1 -243 7453 7043 5 1316 2360 224 14 29 chr5 95938789 95939454 -56597805 - L1_Mur2 LINE L1 -206 5671 5017 5 1316 2634 140 36 34 chr5 95939457 95939931 -56597328 + MT2C_Mm LTR ERVL 1 475 0 5 1316 1163 227 35 32 chr5 95939932 95940301 -56596958 - L1_Mur2 LINE L1 -859 5018 4649 5 1316 1826 165 16 48 chr5 95940296 95940568 -56596691 - Lx2B LINE L1 -393 6607 6338 5 1316 906 169 0 0 chr5 95940568 95940716 -56596543 + B1_Mus1 SINE Alu 1 148 0 5 1316 1826 165 16 48 chr5 95940716 95940819 -56596440 - Lx2B LINE L1 -663 6337 6244 5 1316 264 324 34 85 chr5 95940914 95941032 -56596227 - PB1D7 SINE Alu -8 112 1 5 1316 1317 233 126 18 chr5 95941181 95941351 -56595908 + RMER16 LTR ERVK 103 287 -246 5 1316 243 0 0 0 chr5 95941351 95941378 -56595881 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1316 1317 233 126 18 chr5 95941378 95941390 -56595869 + RMER16 LTR ERVK 288 314 -219 5 1316 1965 168 77 3 chr5 95941390 95941778 -56595481 - Lx LINE L1 -7 6647 6231 6 1316 1317 233 126 18 chr5 95941778 95941983 -56595276 + RMER16 LTR ERVK 315 531 -2 5 1316 264 405 32 13 chr5 95942450 95942605 -56594654 + B3A SINE B2 25 182 -16 5 1316 974 271 119 40 chr5 95942608 95943035 -56594224 + Lx7 LINE L1 6901 7361 -335 6 1316 1654 249 19 7 chr5 95943070 95943490 -56593769 - Lx4A LINE L1 0 7058 6634 6 1316 346 209 13 86 chr5 95943485 95943637 -56593622 + Lx7 LINE L1 7371 7511 -185 6 1316 262 272 93 37 chr5 95943698 95943805 -56593454 - RSINE1 SINE B4 -35 130 18 6 1316 564 238 8 8 chr5 95943879 95944006 -56593253 - B1_Mm SINE Alu 0 147 21 6 1316 498 225 53 60 chr5 95944050 95944201 -56593058 - B1_Mur4 SINE Alu 0 150 1 6 1316 431 354 0 0 chr5 95944210 95944340 -56592919 - B1_Mur1 SINE Alu -8 141 12 6 1316 240 368 28 28 chr5 95944242 95944351 -56592908 - ID_B1 SINE B4 -37 187 79 6 1316 1110 95 0 39 chr5 95944375 95944529 -56592730 + B1_Mus1 SINE Alu 1 148 0 6 1316 614 289 0 0 chr5 95944543 95944695 -56592564 - B3 SINE B2 -5 211 60 6 1317 477 331 82 6 chr5 95944882 95945064 -56592195 - ID_B1 SINE B4 -25 199 4 6 1317 291 269 0 88 chr5 95945317 95945431 -56591828 + PB1D7 SINE Alu 3 106 -14 6 1317 1217 56 14 0 chr5 95945954 95946097 -56591162 - B1_Mus2 SINE Alu -2 145 1 6 1317 213 286 110 20 chr5 95946216 95946316 -56590943 - PB1D7 SINE Alu 0 120 12 6 1317 202 183 0 27 chr5 95946481 95946554 -56590705 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 6 1317 290 169 51 101 chr5 95946605 95946684 -56590575 - Lx3C LINE L1 -5 6968 6894 6 1317 3356 201 78 5 chr5 95946685 95947419 -56589840 - Lx2B LINE L1 -11 6989 6203 6 1317 378 42 0 0 chr5 95948239 95948287 -56588972 + (TAA)n Simple_repeat Simple_repeat 2 49 0 6 1317 1068 115 0 0 chr5 95948401 95948540 -56588719 + B1_Mus2 SINE Alu 2 140 -7 6 1317 36 40 0 0 chr5 95948540 95948590 -56588669 + AT_rich Low_complexity Low_complexity 1 50 0 6 1317 1162 96 0 0 chr5 95950031 95950177 -56587082 - B1_Mus2 SINE Alu -1 146 1 6 1317 351 277 18 18 chr5 95952227 95952341 -56584918 + RMER10B LTR ERVL 229 342 -56 6 1317 446 313 42 6 chr5 95952370 95952537 -56584722 + B3A SINE B2 8 180 -18 6 1317 25 0 0 0 chr5 95952572 95952597 -56584662 + AT_rich Low_complexity Low_complexity 1 25 0 6 1317 877 216 39 152 chr5 95952666 95953021 -56584238 - RLTRETN_Mm LTR ERVK 0 322 8 6 1317 613 243 10 62 chr5 95953173 95953366 -56583893 - B2_Mm2 SINE B2 -12 183 1 6 1317 3654 62 23 2 chr5 95953499 95953936 -56583323 - L1_Mus1 LINE L1 0 6567 6122 6 1317 21 57 0 0 chr5 95954323 95954358 -56582901 + AT_rich Low_complexity Low_complexity 1 35 0 6 1317 1266 68 0 0 chr5 95954362 95954510 -56582749 + B1_Mus1 SINE Alu 1 148 0 6 1317 324 48 0 0 chr5 95954510 95954552 -56582707 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1317 225 218 93 65 chr5 95955613 95955721 -56581538 + MURVY-LTR LTR ERV1 351 461 -58 6 1317 467 184 7 13 chr5 95955738 95955840 -56581419 - Lx5 LINE L1 -121 6929 6774 6 1317 1347 331 46 45 chr5 95955842 95956510 -56580749 + RodERV21-int LTR ERV1 4120 4788 -203 6 1317 736 191 26 7 chr5 95956652 95956805 -56580454 - L1_Mur2 LINE L1 -694 5183 5028 6 1317 2296 208 129 6 chr5 95956808 95956979 -56580280 + Lx5 LINE L1 6443 6627 -423 6 1317 391 18 36 0 chr5 95956979 95957035 -56580224 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1317 2296 208 129 6 chr5 95957035 95957396 -56579863 + Lx5 LINE L1 6628 7040 -10 6 1317 330 307 7 21 chr5 95957439 95957579 -56579680 + Lx6 LINE L1 7211 7348 -112 6 1317 716 176 7 7 chr5 95957579 95957716 -56579543 + MTC-int LTR MaLR 909 1045 -213 6 1317 378 164 82 0 chr5 95958432 95958505 -56578754 - MTC LTR MaLR 0 421 343 6 1317 252 0 0 0 chr5 95958595 95958623 -56578636 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1317 868 256 46 95 chr5 95958637 95959004 -56578255 + RMER5 LTR ERV1 186 534 0 6 1317 485 339 0 6 chr5 95959326 95959498 -56577761 - B3A SINE B2 -26 172 2 6 1317 30 27 0 0 chr5 95959498 95959535 -56577724 + AT_rich Low_complexity Low_complexity 1 37 0 6 1317 216 170 0 0 chr5 95959633 95959686 -56577573 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1317 207 204 0 20 chr5 95959785 95959835 -56577424 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 6 1317 2833 189 12 41 chr5 95959837 95960404 -56576855 + RLTR31_Mur LTR ERVK 1 551 -2 6 1317 1863 215 34 38 chr5 95960405 95961271 -56575988 + RMER3D-int LTR ERVK 1 1382 -1460 6 1317 5137 207 83 53 chr5 95961329 95962804 -56574455 + RMER3D-int LTR ERVK 388 2841 -1 6 1317 605 162 7 117 chr5 95962805 95962959 -56574300 + RLTR31_Mur LTR ERVK 1 137 -416 6 1317 575 244 60 161 chr5 95962968 95963334 -56573925 + L1VL1 LINE L1 29 357 -6065 6 1317 390 301 19 6 chr5 95963415 95963572 -56573687 + L1Md_F LINE L1 578 736 -5783 6 1317 1446 217 19 0 chr5 95963551 95963869 -56573390 + L1Md_F LINE L1 628 951 -5568 6 1317 1960 205 150 18 chr5 95963865 95964366 -56572893 - L1VL2 LINE L1 -5674 661 95 6 1317 918 241 113 51 chr5 95964471 95964661 -56572598 - MTEb LTR MaLR -21 358 168 6 1317 2969 86 43 0 chr5 95964661 95965055 -56572204 - RLTR10A LTR ERVK 0 411 1 6 1317 918 241 113 51 chr5 95965055 95965200 -56572059 - MTEb LTR MaLR -212 167 2 6 1317 3629 43 30 11 chr5 95965208 95965557 -56571702 + MT2C_Mm LTR ERVL 1 363 -112 6 1317 4565 19 0 0 chr5 95965557 95966039 -56571220 - LTRIS_Mm LTR ERV1 0 482 1 6 1317 3629 43 30 11 chr5 95966039 95966155 -56571104 + MT2C_Mm LTR ERVL 364 475 0 6 1317 399 265 71 29 chr5 95966521 95966661 -56570598 + B1_Mm SINE Alu 2 147 0 6 1317 711 306 82 44 chr5 95966695 95967037 -56570222 + MTEa LTR MaLR 5 359 -20 6 1317 959 243 35 16 chr5 95967540 95967575 -56569684 + L1_Rod LINE L1 5586 5618 -229 6 1317 3416 75 0 2 chr5 95967575 95967992 -56569267 - L1_Mus1 LINE L1 0 6567 6152 6 1317 3615 64 7 0 chr5 95967992 95968446 -56568813 + L1Md_F2 LINE L1 5655 6111 -471 6 1317 581 251 54 11 chr5 95968466 95968651 -56568608 + RMER5 LTR ERV1 331 523 -11 6 1317 183 130 36 18 chr5 95968651 95968706 -56568553 + T-rich Low_complexity Low_complexity 1 56 0 6 1317 415 310 33 41 chr5 95968855 95969097 -56568162 - Lx9 LINE L1 -127 7517 7278 6 1317 2982 68 52 0 chr5 95969382 95969751 -56567508 + RLTR10 LTR ERVK 1 388 -2 6 1317 530 292 29 0 chr5 95969814 95969951 -56567308 - B1F SINE Alu -7 142 2 6 1317 410 294 116 25 chr5 95970041 95970240 -56567019 - ID_B1 SINE B4 -3 221 5 6 1317 216 0 0 0 chr5 95970458 95970482 -56566777 + (GGGAGA)n Simple_repeat Simple_repeat 6 29 0 6 1317 1022 137 74 6 chr5 95970482 95970652 -56566607 + MTC LTR MaLR 6 188 -233 6 1317 2726 226 91 75 chr5 95970685 95971630 -56565629 + MT-int LTR MaLR 4 963 -135 6 1317 597 296 45 40 chr5 95971639 95971861 -56565398 - Lx6 LINE L1 -26 7434 7212 6 1317 11447 196 59 76 chr5 95971883 95975989 -56561270 - Lx5 LINE L1 -2 7048 2977 6 1317 2465 18 14 256 chr5 95975989 95976407 -56560852 - RLTR10 LTR ERVK 0 390 97 6 1317 4202 5 0 0 chr5 95976407 95976845 -56560414 - L1Md_A LINE L1 0 6582 6145 6 1317 2465 18 14 256 chr5 95976845 95976941 -56560318 - RLTR10 LTR ERVK -294 96 1 6 1317 351 193 0 67 chr5 95976941 95977030 -56560229 - Lx5 LINE L1 -2897 2983 2901 6 1317 1991 191 43 109 chr5 95977002 95977729 -56559530 - L1Md_A LINE L1 -5525 1199 521 6 1317 219 36 0 0 chr5 95977729 95977757 -56559502 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1317 7186 39 2 0 chr5 95978226 95979030 -56558229 - L1Md_T LINE L1 0 6582 5777 6 1317 276 252 20 10 chr5 95979031 95979131 -56558128 - L1VL1 LINE L1 -6321 101 1 6 1317 815 201 28 7 chr5 95979137 95979282 -56557977 - B1_Mur3 SINE Alu -1 148 1 6 1317 490 270 29 7 chr5 95979290 95979428 -56557831 + Lx7 LINE L1 7548 7688 -8 6 1317 482 255 14 32 chr5 95979451 95979645 -56557614 + B3 SINE B2 1 186 -9 6 1317 603 251 200 6 chr5 95979680 95979860 -56557399 - B3 SINE B2 -1 215 1 6 1317 2652 139 8 171 chr5 95980197 95980823 -56556436 + RMER2 LTR ERV1 44 567 0 6 1317 2218 144 3 2 chr5 95981558 95981942 -56555317 - L1M4 LINE L1 -2838 3308 2922 6 1317 693 215 35 61 chr5 95981956 95982154 -56555105 - RMER13A LTR ERVK -570 290 98 6 1317 356 179 0 15 chr5 95982777 95982845 -56554414 - RMER17A-int LTR ERVK -518 1210 1144 6 1317 246 185 19 0 chr5 95982939 95982993 -56554266 + T-rich Low_complexity Low_complexity 2 56 0 6 1317 39696 35 3 6 chr5 95983009 95989230 -56548029 - L1Md_T LINE L1 -1 6581 383 6 1317 351 0 0 0 chr5 95989336 95989375 -56547884 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6 1317 314 283 30 38 chr5 95989974 95990106 -56547153 + MuRRS4-int LTR ERV1 1302 1432 -3631 6 1317 444 322 65 14 chr5 95990816 95991146 -56546113 + MURVY-int LTR ERV1 4019 4360 -3241 6 1317 1241 298 34 5 chr5 95991423 95991859 -56545400 + MuRRS4-int LTR ERV1 3556 3954 -1109 6 1317 3391 143 16 18 chr5 95992291 95992854 -56544405 + RMER2 LTR ERV1 1 562 -5 6 1317 2797 148 80 12 chr5 95992961 95993462 -56543797 - RLTR33 LTR ERVK -143 535 1 6 1317 283 248 129 26 chr5 95993664 95993780 -56543479 - RSINE1 SINE B4 -34 131 4 6 1317 701 186 32 58 chr5 95993840 95993994 -56543265 - B1_Mur4 SINE Alu 0 150 1 6 1317 264 323 65 36 chr5 95994028 95994166 -56543093 - B1_Mur3 SINE Alu -7 142 1 6 1317 334 377 0 0 chr5 95994175 95994305 -56542954 - B1_Mur1 SINE Alu -8 141 12 6 1317 492 275 84 28 chr5 95994337 95994479 -56542780 - B3 SINE B2 -7 209 60 6 1317 250 346 76 30 chr5 95994640 95994771 -56542488 - B1F SINE Alu 0 149 13 6 1317 510 295 97 17 chr5 95994674 95994850 -56542409 - ID_B1 SINE B4 -30 194 5 6 1317 235 295 15 145 chr5 95995104 95995235 -56542024 + PB1D7 SINE Alu 3 116 -4 6 1317 247 225 38 29 chr5 95996141 95996246 -56541013 + T-rich Low_complexity Low_complexity 4 109 0 7 1317 266 227 0 35 chr5 95996268 95996353 -56540906 - Lx3B LINE L1 0 6973 6888 7 1317 774 105 10 47 chr5 95996391 95996580 -56540679 - Lx LINE L1 -15 6639 6401 7 1317 2957 183 70 7 chr5 95996579 95997163 -56540096 - Lx2B LINE L1 -41 6959 6339 7 1317 6973 102 9 2 chr5 95997211 95998406 -56538853 - L1_Mus1 LINE L1 0 6567 5363 7 1317 1141 91 0 14 chr5 95998406 95998551 -56538708 - B1_Mus1 SINE Alu -5 143 1 7 1317 542 215 12 0 chr5 95998553 95998679 -56538580 - Lx2B LINE L1 -644 6353 6223 7 1317 1937 174 41 41 chr5 95998697 95999159 -56538100 - RMER17D2 LTR ERVK -15 794 333 7 1317 5867 106 0 2 chr5 95999160 95999999 -56537260 - L1_Mm LINE L1 -2812 3071 2235 7 1317 6916 140 12 7 chr5 96000000 96001801 -56535458 - L1Md_A LINE L1 -3650 2233 466 1 1317 6657 72 1 6 chr5 96003840 96004698 -56532561 + L1Md_F2 LINE L1 4732 5585 -298 2 1317 8192 59 11 2 chr5 96004699 96005674 -56531585 + L1Md_F2 LINE L1 5587 6570 -12 2 1317 493 268 69 29 chr5 96006569 96006742 -56530517 + B3A SINE B2 6 185 -13 3 1317 595 261 0 23 chr5 96007057 96007190 -56530069 - B2_Mm2 SINE B2 -64 131 2 4 1317 225 0 0 0 chr5 96007333 96007358 -56529901 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1317 3926 241 11 24 chr5 96008147 96009065 -56528194 - Lx5 LINE L1 -1 7049 6144 6 1317 3996 101 2 2 chr5 96009086 96009641 -56527618 - L1_Mur1 LINE L1 -845 5041 4487 7 1317 1434 138 5 0 chr5 96009637 96009854 -56527405 - L1_Mus4 LINE L1 -232 6404 6187 8 1317 728 254 124 76 chr5 96009853 96010143 -56527116 - L1_Mur1 LINE L1 -6668 314 11 9 1317 5483 54 9 1 chr5 96010169 96010818 -56526441 - L1Md_F3 LINE L1 0 6584 5931 1 1317 6254 75 28 4 chr5 96010817 96011605 -56525654 - L1_Mus1 LINE L1 -1 6566 5760 1 1317 7692 191 50 10 chr5 96011607 96012499 -56524760 - L1_Mur2 LINE L1 -2894 2983 2049 1 1317 552 30 0 0 chr5 96012499 96012565 -56524694 + (TG)n Simple_repeat Simple_repeat 2 67 0 1 1317 7692 187 83 11 chr5 96012565 96013592 -56523667 - L1_Mur2 LINE L1 -3829 2048 901 1 1317 463 222 65 75 chr5 96013838 96014038 -56523221 + MTC-int LTR MaLR 1055 1252 -6 1 1317 1541 233 92 5 chr5 96014043 96014423 -56522836 + MTC LTR MaLR 1 413 -8 1 1317 212 154 19 0 chr5 96014426 96014478 -56522781 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1317 387 356 68 0 chr5 96014487 96014605 -56522654 - B1_Mur1 SINE Alu -21 128 3 1 1317 620 207 35 11 chr5 96015887 96016029 -56521230 - RLTR21 LTR ERVK -136 1436 1281 1 1317 396 0 0 0 chr5 96016069 96016113 -56521146 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1317 270 0 0 0 chr5 96016161 96016191 -56521068 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1317 1010 223 82 43 chr5 96016198 96016526 -56520733 - RLTR21 LTR ERVK -426 1146 806 1 1317 28 29 0 0 chr5 96016566 96016601 -56520658 + AT_rich Low_complexity Low_complexity 1 35 0 2 1317 917 186 20 11 chr5 96016865 96017107 -56520152 - L1_Mur2 LINE L1 -2510 3367 3125 2 1317 621 178 0 23 chr5 96017107 96017239 -56520020 - Lx LINE L1 -2 6652 6524 2 1317 1250 62 7 0 chr5 96017495 96017640 -56519619 - B1_Mm SINE Alu 0 147 2 2 1317 229 351 0 13 chr5 96018321 96018396 -56518863 + ID4_ SINE ID 8 81 -2 2 1317 324 331 99 20 chr5 96019055 96019206 -56518053 - B3A SINE B2 -11 187 25 2 1317 189 74 0 0 chr5 96020944 96020971 -56516288 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1317 1023 121 7 0 chr5 96020977 96021118 -56516141 - B1_Mus1 SINE Alu -5 143 2 2 1317 1471 78 5 10 chr5 96023001 96023194 -56514065 + B2_Mm1t SINE B2 1 192 -1 2 1317 272 330 0 74 chr5 96024217 96024325 -56512934 - PB1D7 SINE Alu -20 100 1 2 1317 350 340 94 25 chr5 96024576 96024778 -56512481 + ID_B1 SINE B4 1 216 -8 3 1317 499 311 83 0 chr5 96024897 96025090 -56512169 + B3 SINE B2 2 210 -6 3 1317 593 228 20 20 chr5 96025261 96025409 -56511850 + B1_Mus1 SINE Alu 1 148 0 3 1317 358 292 19 83 chr5 96025435 96025592 -56511667 + B1_Mur4 SINE Alu 3 149 -1 3 1317 285 184 0 0 chr5 96025672 96025721 -56511538 + RSINE1 SINE B4 3 51 -114 3 1317 975 97 12 49 chr5 96026288 96026451 -56510808 - L1_Mus3 LINE L1 -7 6631 6475 3 1317 1353 152 4 51 chr5 96026451 96026707 -56510552 + L1_Mus4 LINE L1 5891 6134 -502 3 1317 268 333 11 0 chr5 96028207 96028294 -56508965 - B3 SINE B2 -128 88 1 3 1317 643 237 0 0 chr5 96028325 96028456 -56508803 - Lx7 LINE L1 -16 7680 7550 3 1317 297 268 153 8 chr5 96028467 96028591 -56508668 + B1F2 SINE Alu 7 148 -1 3 1317 235 326 54 14 chr5 96028734 96028955 -56508304 - Lx7 LINE L1 -222 7474 7245 3 1317 1137 110 0 0 chr5 96028979 96029125 -56508134 + B1_Mus1 SINE Alu 3 148 0 4 1317 342 0 0 0 chr5 96029125 96029163 -56508096 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1317 609 245 105 37 chr5 96029163 96029354 -56507905 - Lx7 LINE L1 -460 7236 7033 3 1317 1010 223 9 5 chr5 96029377 96029593 -56507666 - L1_Mur2 LINE L1 -207 5670 5454 4 1317 333 0 0 0 chr5 96030443 96030480 -56506779 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1317 3498 210 65 1 chr5 96030548 96031291 -56505968 - Lx2B LINE L1 -1 6999 6210 4 1317 367 279 29 99 chr5 96034763 96034934 -56502325 + RMER10B LTR ERVL 228 386 -12 4 1317 475 316 41 6 chr5 96034909 96035078 -56502181 + B3A SINE B2 6 180 -18 4 1317 390 329 10 0 chr5 96035391 96035517 -56501742 - B2_Mm2 SINE B2 -67 149 13 4 1317 28 29 0 0 chr5 96036026 96036061 -56501198 + AT_rich Low_complexity Low_complexity 1 35 0 4 1317 6226 235 20 24 chr5 96036469 96036919 -56500340 - Lx5 LINE L1 0 7050 6622 4 1317 1363 242 150 52 chr5 96036919 96037325 -56499934 - RLTR41 LTR ERV1 0 446 1 5 1317 6226 234 24 22 chr5 96037325 96038894 -56498365 - Lx5 LINE L1 -429 6621 5027 4 1317 1746 266 107 17 chr5 96038896 96039438 -56497821 + Lx5 LINE L1 6443 7033 -17 5 1317 332 157 0 0 chr5 96039456 96039507 -56497752 - Lx4B LINE L1 -541 6517 6467 5 1317 2939 81 0 0 chr5 96039511 96039893 -56497366 + L1_Mm LINE L1 4757 5138 -745 5 1317 7939 49 7 24 chr5 96039927 96041077 -56496182 - L1Md_F2 LINE L1 0 6582 5453 5 1317 4919 77 3 8 chr5 96041074 96041733 -56495526 + L1Md_F2 LINE L1 4800 5455 -428 5 1317 600 199 35 7 chr5 96041725 96041867 -56495392 - L1_Mur2 LINE L1 -684 5193 5048 5 1317 418 237 10 0 chr5 96041939 96042036 -56495223 + MTC-int LTR MaLR 909 1006 -252 5 1317 216 97 0 0 chr5 96042134 96042165 -56495094 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 5 1317 5071 120 10 0 chr5 96042174 96042883 -56494376 - L1_Mus3 LINE L1 -9 6629 5914 5 1317 225 240 29 9 chr5 96042999 96043104 -56494155 + (TA)n Simple_repeat Simple_repeat 2 108 0 5 1317 407 151 114 0 chr5 96043422 96043514 -56493745 - MTC LTR MaLR 0 421 268 6 1317 366 234 52 0 chr5 96043540 96043617 -56493642 - Lx5 LINE L1 -170 6880 6800 6 1317 1995 177 70 13 chr5 96043644 96044027 -56493232 + RLTR9E LTR ERVK 5 409 0 6 1317 566 147 29 29 chr5 96044031 96044136 -56493123 - MTC LTR MaLR -107 314 210 6 1317 1617 229 24 13 chr5 96044111 96044488 -56492771 - MTC-int LTR MaLR -451 807 427 6 1317 1334 253 59 35 chr5 96044601 96045006 -56492253 + MTD LTR MaLR 5 419 0 6 1317 318 200 86 0 chr5 96045023 96045093 -56492166 - B3 SINE B2 -135 81 6 6 1317 388 283 42 28 chr5 96045106 96045248 -56492011 - MTC LTR MaLR -228 146 3 6 1317 756 52 0 0 chr5 96046044 96046140 -56491119 + B1_Mm SINE Alu 52 147 0 6 1317 512 294 63 31 chr5 96046145 96046572 -56490687 + L1MA4 LINE L1 5476 5927 -373 6 1317 338 160 80 0 chr5 96046941 96047016 -56490243 - Lx9 LINE L1 -1 7643 7563 6 1317 390 21 0 0 chr5 96047022 96047069 -56490190 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1317 371 291 30 32 chr5 96047219 96047451 -56489808 + L1VL1 LINE L1 255 485 -5933 7 1317 401 276 16 8 chr5 96047474 96047602 -56489657 + L1_Mus1 LINE L1 675 803 -5813 7 1317 30107 125 14 14 chr5 96047608 96053465 -56483794 + L1_Mus1 LINE L1 723 6566 -1 7 1317 645 234 145 15 chr5 96053955 96054155 -56483104 - URR1A DNA MER1_type 0 226 1 7 1317 1045 145 6 0 chr5 96054228 96054387 -56482872 + B2_Mm1a SINE B2 1 160 -33 7 1317 180 0 0 0 chr5 96054387 96054407 -56482852 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 7 1317 6323 118 28 2 chr5 96054418 96055372 -56481887 + L1_Mm LINE L1 4272 5250 -633 7 1317 1183 288 36 93 chr5 96055993 96056552 -56480707 + RMER5 LTR ERV1 3 529 -5 7 1317 263 246 0 14 chr5 96056741 96056815 -56480444 - Lx9 LINE L1 -173 7471 7399 7 1317 513 277 29 0 chr5 96057292 96057429 -56479830 - B1F SINE Alu -7 142 2 7 1317 280 314 19 29 chr5 96057530 96057635 -56479624 - ID_B1 SINE B4 -11 213 110 7 1317 495 0 0 0 chr5 96057901 96057956 -56479303 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1317 1165 144 6 0 chr5 96057960 96058141 -56479118 + MTC LTR MaLR 11 192 -229 8 1317 2630 230 90 75 chr5 96058171 96058916 -56478343 + MT-int LTR MaLR 4 801 -297 8 1317 4386 8 0 0 chr5 96058916 96059398 -56477861 + LTRIS_Mm LTR ERV1 1 482 0 8 1317 2630 230 90 75 chr5 96059398 96059607 -56477652 + MT-int LTR MaLR 802 972 -126 8 1317 265 294 31 61 chr5 96059616 96059779 -56477480 - Lx7 LINE L1 -23 7673 7516 8 1317 11091 222 78 50 chr5 96059846 96061696 -56475563 - Lx5 LINE L1 0 7050 5097 8 1317 800 94 12 0 chr5 96061696 96061829 -56475430 - B1_Mm SINE Alu 0 149 10 8 1317 11091 222 78 50 chr5 96061829 96062059 -56475200 - Lx5 LINE L1 0 5096 4852 8 1317 576 0 0 0 chr5 96062059 96062123 -56475136 + (TTTTC)n Simple_repeat Simple_repeat 4 67 0 8 1317 11091 186 58 87 chr5 96062123 96062320 -56474939 - Lx5 LINE L1 -1026 4851 4625 8 1317 2673 83 3 3 chr5 96062320 96062683 -56474576 - L1_Mus1 LINE L1 0 6567 6205 8 1317 11091 201 57 109 chr5 96062683 96064689 -56472570 - Lx5 LINE L1 -1255 4625 2620 8 1317 1337 164 55 73 chr5 96064689 96065017 -56472242 - RLTRETN_Mm LTR ERVK 0 322 1 8 1317 11091 201 57 109 chr5 96065017 96065897 -56471362 - Lx5 LINE L1 -1255 2619 1738 8 1317 2107 166 60 7 chr5 96065959 96066408 -56470851 - L1_Mur2 LINE L1 -906 4971 4499 9 1317 3375 197 46 1 chr5 96066876 96067643 -56469616 - L1_Mur2 LINE L1 -1378 4499 3699 9 1317 235 234 30 30 chr5 96067643 96067709 -56469550 - RLTR9A LTR ERVK -296 72 7 9 1317 366 58 57 23 chr5 96067778 96067866 -56469393 + (TTTTTG)n Simple_repeat Simple_repeat 6 96 0 9 1317 394 286 16 6 chr5 96068252 96068435 -56468824 - RLTR6-int LTR ERV1 -207 7571 7387 9 1317 779 152 7 0 chr5 96068430 96068568 -56468691 - RMER16-int LTR ERVK -1068 4338 4200 9 1317 3637 147 44 40 chr5 96068568 96069314 -56467945 - RMER17D LTR ERVK 0 889 141 9 1317 1483 174 92 0 chr5 96069321 96069614 -56467645 - IAPEY3_LTR LTR ERVK -12 320 1 9 1317 1258 181 61 20 chr5 96069614 96069957 -56467302 - IAPEz-int LTR ERVK 0 6481 6125 9 1317 3633 112 29 25 chr5 96069974 96070240 -56467019 - IAPEY3-int LTR ERVK -342 7338 7071 9 1317 4211 38 0 0 chr5 96070240 96070736 -56466523 + L1Md_T LINE L1 6087 6582 0 9 1317 3633 112 29 25 chr5 96070736 96071063 -56466196 - IAPEY3-int LTR ERVK -610 7070 6743 9 1317 3101 102 4 4 chr5 96071053 96071507 -56465752 - IAPEY3-int LTR ERVK -1367 6214 5761 9 1317 3114 96 0 16 chr5 96071498 96071945 -56465314 - IAPEY3-int LTR ERVK -1939 5642 5203 9 1317 795 76 17 8 chr5 96072222 96072341 -56464918 - IAPEY3-int LTR ERVK -2932 4649 4530 9 1317 428 188 19 34 chr5 96072357 96072480 -56464779 - MMETn-int LTR ERVK -2380 2464 2357 9 1317 1896 140 111 5 chr5 96072489 96073073 -56464186 - ETnERV2-int LTR ERVK -3142 4264 3567 1 1317 577 219 0 0 chr5 96073099 96073218 -56464041 - ETnERV2-int LTR ERVK -4653 2753 2635 1 1317 291 267 0 55 chr5 96073230 96073321 -56463938 - ETnERV2-int LTR ERVK -4867 2539 2454 1 1317 280 310 88 0 chr5 96073334 96073447 -56463812 - RMER16-int LTR ERVK -5077 1060 938 1 1317 1441 198 93 68 chr5 96073452 96073966 -56463293 - RMER16-int LTR ERVK -4760 646 251 1 1317 335 144 0 103 chr5 96074077 96074193 -56463066 - MMERVK10C-int LTR ERVK -6629 952 849 1 1317 5124 67 14 15 chr5 96074174 96074904 -56462355 - IAPLTR4_I LTR ERVK -704 766 38 1 1317 1409 187 73 41 chr5 96074905 96075222 -56462037 - IAPEY3_LTR LTR ERVK -1 366 1 1 1317 411 57 0 0 chr5 96075222 96075275 -56461984 - RMER17D2 LTR ERVK -659 150 98 1 164 21425 61 3 2 chr5 96075285 96078950 -56458309 - L1Md_F3 LINE L1 -8 6576 2909 1 1318 725 152 0 9 chr5 96078950 96079063 -56458196 - RMER17D2 LTR ERVK -697 112 1 1 1318 706 100 8 62 chr5 96079063 96079191 -56458068 - RMER16-int LTR ERVK -1207 4199 4079 1 1318 3645 124 55 73 chr5 96079191 96079878 -56457381 - RMER16-int LTR ERVK -3017 2389 1677 1 1318 871 96 0 151 chr5 96079878 96080037 -56457222 + B1_Mm SINE Alu 1 135 -12 1 1318 3645 124 55 73 chr5 96080037 96080060 -56457199 - RMER16-int LTR ERVK -3730 1676 1676 1 1318 186 43 0 0 chr5 96080060 96080083 -56457176 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1318 3645 124 55 73 chr5 96080083 96080138 -56457121 - RMER16-int LTR ERVK -3730 1676 1637 1 1318 228 260 125 77 chr5 96080138 96080242 -56457017 + MTA_Mm LTR MaLR 196 304 -92 1 1318 278 291 15 30 chr5 96080261 96080392 -56456867 - ETnERV2-int LTR ERVK -3812 2355 2227 1 1318 552 242 28 131 chr5 96080501 96080753 -56456506 - ETnERV2-int LTR ERVK -4859 2547 2322 1 1318 298 294 6 150 chr5 96080772 96080932 -56456327 - ETnERV2-int LTR ERVK -5075 2331 2195 1 1318 252 208 0 0 chr5 96080904 96080952 -56456307 - ETnERV2-int LTR ERVK -1730 1584 1537 1 1318 467 230 8 16 chr5 96081137 96081265 -56455994 - ETnERV2-int LTR ERVK -3822 1584 1458 1 1318 6936 83 6 1 chr5 96081265 96082556 -56454703 - L1Md_F2 LINE L1 0 6582 5282 1 1318 180 0 0 0 chr5 96082630 96082650 -56454609 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 1 1318 240 162 0 0 chr5 96082952 96082989 -56454270 - RMER10A LTR ERVL -394 48 12 1 1318 952 238 94 7 chr5 96084072 96084381 -56452878 - L1_Mur2 LINE L1 -893 4984 4649 1 1318 1734 197 34 0 chr5 96084376 96084732 -56452527 - Lx2B LINE L1 -393 6607 6240 1 1318 253 317 53 80 chr5 96084823 96084936 -56452323 - PB1D7 SINE Alu -8 112 3 1 1318 1525 217 33 83 chr5 96085064 96085293 -56451966 + RMER16 LTR ERVK 1 320 -213 1 1318 2146 162 30 0 chr5 96085293 96085689 -56451570 - Lx LINE L1 -7 6647 6240 1 1318 1525 222 62 33 chr5 96085689 96085903 -56451356 + RMER16 LTR ERVK 321 533 0 1 1318 1093 237 86 24 chr5 96086254 96086591 -56450668 + Lx7 LINE L1 7010 7367 -329 1 1318 1822 232 26 7 chr5 96086602 96087019 -56450240 - Lx4A LINE L1 0 7058 6634 1 1318 348 255 0 54 chr5 96087014 96087163 -56450096 + Lx7 LINE L1 7371 7511 -185 1 1318 622 286 7 7 chr5 96087401 96087549 -56449710 - B1_Mus1 SINE Alu 0 148 1 1 1318 268 315 60 23 chr5 96087593 96087726 -56449533 - B1_Mur4 SINE Alu -12 138 1 1 1318 459 341 0 0 chr5 96087735 96087867 -56449392 - B1_Mur1 SINE Alu -8 141 10 1 1318 600 288 7 0 chr5 96087896 96088049 -56449210 - B3 SINE B2 -3 213 60 1 1318 232 247 64 118 chr5 96088667 96088777 -56448482 + PB1D7 SINE Alu 3 106 -14 1 1318 321 202 0 48 chr5 96089611 96089715 -56447544 + T-rich Low_complexity Low_complexity 2 100 0 1 1318 342 250 0 0 chr5 96089844 96089952 -56447307 + T-rich Low_complexity Low_complexity 1 108 0 1 1318 237 235 0 36 chr5 96089978 96090062 -56447197 - Lx3B LINE L1 -5 6968 6888 1 1318 1110 89 7 0 chr5 96090084 96090230 -56447029 - B1_Mus1 SINE Alu 0 148 2 1 1318 3575 205 43 3 chr5 96090240 96091004 -56446255 - Lx2B LINE L1 -3 6997 6203 1 1318 31 26 0 0 chr5 96091815 96091853 -56445406 + AT_rich Low_complexity Low_complexity 1 38 0 1 1318 313 301 23 47 chr5 96095259 96095388 -56441871 + RMER10B LTR ERVL 216 341 -57 1 1318 623 269 0 47 chr5 96095814 96096005 -56441254 - B2_Mm2 SINE B2 -12 183 2 1 1318 34150 81 8 25 chr5 96096098 96102569 -56434690 - L1Md_F2 LINE L1 -5 6577 290 1 1318 341 22 0 21 chr5 96102572 96102619 -56434640 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 1 1318 727 212 22 7 chr5 96102619 96102757 -56434502 - B1_Mur3 SINE Alu -9 140 1 1 1318 454 263 29 7 chr5 96102765 96102903 -56434356 + Lx7 LINE L1 7548 7688 -8 1 1318 474 262 14 32 chr5 96102926 96103120 -56434139 + B3 SINE B2 1 186 -9 1 1318 585 251 206 0 chr5 96103160 96103335 -56433924 - B3 SINE B2 -5 211 1 1 1318 2698 141 9 168 chr5 96103659 96104297 -56432962 + RMER2 LTR ERV1 31 567 0 1 1318 2057 132 0 3 chr5 96105027 96105378 -56431881 - MusHAL1 LINE L1 -636 2076 1727 1 1318 279 0 0 0 chr5 96105472 96105503 -56431756 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1318 302 264 31 31 chr5 96106100 96106229 -56431030 + MuRRS4-int LTR ERV1 1302 1430 -3633 1 1318 369 326 61 11 chr5 96106941 96107271 -56429988 + MURVY-int LTR ERV1 4019 4360 -3241 1 1318 1067 301 68 5 chr5 96107548 96107982 -56429277 + MuRRS4-int LTR ERV1 3556 3954 -1109 1 1318 3421 136 18 18 chr5 96108413 96108975 -56428284 + RMER2 LTR ERV1 1 562 -5 1 1318 2855 145 78 14 chr5 96109082 96109585 -56427674 - RLTR33 LTR ERVK -143 535 1 1 1318 269 279 96 64 chr5 96109746 96109903 -56427356 - RSINE1 SINE B4 0 165 4 1 1318 626 193 32 58 chr5 96109961 96110115 -56427144 - B1_Mur4 SINE Alu 0 150 1 1 1318 310 326 73 36 chr5 96110149 96110286 -56426973 - B1_Mur3 SINE Alu -7 142 1 1 1318 352 377 0 0 chr5 96110295 96110425 -56426834 - B1_Mur1 SINE Alu -8 141 12 1 1318 500 275 84 28 chr5 96110458 96110600 -56426659 - B3 SINE B2 -7 209 60 1 1318 515 304 83 34 chr5 96110767 96110971 -56426288 - ID_B1 SINE B4 -6 218 5 1 1318 246 286 15 145 chr5 96111226 96111357 -56425902 + PB1D7 SINE Alu 3 116 -4 1 1318 254 198 0 47 chr5 96112250 96112335 -56424924 + (TTTG)n Simple_repeat Simple_repeat 2 82 0 1 1318 21 0 0 0 chr5 96112352 96112373 -56424886 + AT_rich Low_complexity Low_complexity 1 21 0 1 1318 277 267 0 0 chr5 96112380 96112466 -56424793 - Lx3B LINE L1 0 6973 6888 1 1318 732 115 10 47 chr5 96112504 96112693 -56424566 - Lx LINE L1 -15 6639 6401 1 1318 2966 185 72 5 chr5 96112692 96113274 -56423985 - Lx2B LINE L1 -41 6959 6339 1 1318 6981 99 13 2 chr5 96113320 96114511 -56422748 - L1_Mus1 LINE L1 0 6567 5363 1 1318 1113 84 0 14 chr5 96114511 96114656 -56422603 - B1_Mus1 SINE Alu -5 143 1 1 1318 524 222 14 1 chr5 96114658 96114784 -56422475 - Lx2B LINE L1 -648 6352 6220 1 1318 3620 129 22 55 chr5 96114807 96115571 -56421688 - RMER17A LTR ERVK -12 739 1 1 1318 7429 71 6 0 chr5 96115642 96116597 -56420662 - L1Md_F2 LINE L1 0 6582 5622 1 1318 9666 113 21 26 chr5 96116599 96118107 -56419152 + MMETn-int LTR ERVK 3344 4844 0 1 1318 1883 138 9 51 chr5 96118107 96118443 -56418816 + RLTRETN_Mm LTR ERVK 1 322 0 1 1318 31789 108 5 2 chr5 96118443 96123626 -56413633 - L1Md_F2 LINE L1 -262 5621 466 1 1318 3494 25 2 0 chr5 96125051 96125446 -56411813 - MTA_Mm LTR MaLR 0 396 1 1 1318 9603 23 2 0 chr5 96125446 96126542 -56410717 - MTA_Mm-int LTR MaLR 0 1098 1 1 1318 3513 23 2 0 chr5 96126542 96126937 -56410322 - MTA_Mm LTR MaLR 0 396 1 1 1318 6573 77 1 6 chr5 96127554 96128412 -56408847 + L1Md_F2 LINE L1 4732 5585 -298 1 1318 8007 55 4 2 chr5 96128413 96129395 -56407864 + L1Md_F2 LINE L1 5587 6570 -12 1 1318 473 266 63 29 chr5 96130416 96130590 -56406669 + B3A SINE B2 6 185 -13 1 1318 552 244 0 24 chr5 96130916 96131042 -56406217 - B2_Mm2 SINE B2 -71 124 2 1 1318 189 0 0 0 chr5 96131187 96131208 -56406051 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1318 3834 249 11 23 chr5 96131996 96132913 -56404346 - Lx5 LINE L1 -1 7049 6144 1 1318 4047 101 0 0 chr5 96132934 96133489 -56403770 - L1_Mur1 LINE L1 -845 5041 4487 1 1318 1444 129 5 0 chr5 96133485 96133702 -56403557 - L1_Mus4 LINE L1 -232 6404 6187 1 1318 743 244 112 84 chr5 96133701 96133997 -56403262 - L1_Mur1 LINE L1 -6668 314 11 1 1318 4802 40 9 0 chr5 96134004 96134600 -56402659 - L1Md_F3 LINE L1 0 6584 6005 1 1318 258 100 0 0 chr5 96134600 96134618 -56402641 + (T)n Simple_repeat Simple_repeat 1 18 0 1 1318 38747 32 1 1 chr5 96134621 96142116 -56395143 - L1Md_T LINE L1 0 6585 1 1 1318 741 34 0 0 chr5 96142115 96142204 -56395055 - L1Md_F3 LINE L1 -564 6020 5932 1 1318 5963 75 28 4 chr5 96142204 96142992 -56394267 - L1_Mus1 LINE L1 -1 6566 5760 1 1318 198 0 0 0 chr5 96143469 96143491 -56393768 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1318 41926 11 0 2 chr5 96143526 96150933 -56386326 - L1Md_A LINE L1 0 6582 1 1 1318 7402 191 51 13 chr5 96150934 96151819 -56385440 - L1_Mur2 LINE L1 -2904 2973 2048 1 1318 441 36 0 0 chr5 96151819 96151874 -56385385 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1318 7402 192 57 10 chr5 96151874 96152922 -56384337 - L1_Mur2 LINE L1 -3830 2047 901 1 1318 441 219 67 78 chr5 96153175 96153368 -56383891 + MTC-int LTR MaLR 1062 1252 -6 1 1318 1545 229 72 5 chr5 96153373 96153760 -56383499 + MTC LTR MaLR 1 413 -8 1 1318 241 176 20 0 chr5 96153763 96153814 -56383445 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1318 565 217 35 11 chr5 96155224 96155366 -56381893 - RLTR21 LTR ERVK -136 1436 1281 1 1318 513 0 0 0 chr5 96155406 96155463 -56381796 + (TC)n Simple_repeat Simple_repeat 2 58 0 1 1318 786 58 0 0 chr5 96155513 96155617 -56381642 + (CA)n Simple_repeat Simple_repeat 2 105 0 1 1318 969 214 82 42 chr5 96155625 96155956 -56381303 - RLTR21 LTR ERVK -426 1146 803 1 1318 30 27 0 0 chr5 96155994 96156031 -56381228 + AT_rich Low_complexity Low_complexity 1 37 0 1 1318 934 188 24 13 chr5 96156295 96156572 -56380687 - L1_Mur2 LINE L1 -2510 3367 3104 1 1318 3380 43 2 0 chr5 96156573 96156968 -56380291 - MTA_Mm LTR MaLR 0 396 1 1 1318 9690 17 3 0 chr5 96156968 96158063 -56379196 - MTA_Mm-int LTR MaLR 0 1098 1 1 1318 904 26 9 0 chr5 96158063 96158179 -56379080 - MTA_Mm LTR MaLR 0 396 280 1 1318 1479 31 5 0 chr5 96158168 96158359 -56378900 + MTA_Mm LTR MaLR 205 396 0 1 1318 411 184 0 48 chr5 96158359 96158462 -56378797 - Lx LINE L1 -33 6621 6524 1 1318 246 32 0 0 chr5 96158694 96158725 -56378534 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1318 1137 90 7 0 chr5 96158734 96158879 -56378380 - B1_Mm SINE Alu 0 147 2 1 1318 257 331 97 19 chr5 96160294 96160448 -56376811 - B3A SINE B2 -11 187 22 1 1318 1011 106 7 0 chr5 96162216 96162357 -56374902 - B1_Mus1 SINE Alu -5 143 2 1 1318 1405 68 5 10 chr5 96164241 96164434 -56372825 + B2_Mm1t SINE B2 1 192 -1 1 1318 584 14 14 0 chr5 96164736 96164809 -56372450 + (CA)n Simple_repeat Simple_repeat 1 74 0 1 1318 247 320 0 74 chr5 96165514 96165622 -56371637 - PB1D7 SINE Alu -20 100 1 1 1318 268 326 107 28 chr5 96165873 96166050 -56371209 + ID_B1 SINE B4 1 191 -33 2 1318 471 311 0 0 chr5 96166191 96166342 -56370917 + B3 SINE B2 60 210 -6 2 1318 560 221 20 20 chr5 96166513 96166661 -56370598 + B1_Mus1 SINE Alu 1 148 0 2 1318 310 278 19 83 chr5 96166687 96166844 -56370415 + B1_Mur4 SINE Alu 3 149 -1 2 1318 245 204 0 0 chr5 96166924 96166973 -56370286 + RSINE1 SINE B4 3 51 -114 2 1318 920 90 12 49 chr5 96167539 96167702 -56369557 - L1_Mus3 LINE L1 -7 6631 6475 2 1318 1249 152 4 47 chr5 96167702 96167957 -56369302 + L1_Mus4 LINE L1 5891 6134 -502 2 1318 270 333 11 0 chr5 96169458 96169545 -56367714 - B3 SINE B2 -128 88 1 2 1318 600 229 0 0 chr5 96169576 96169707 -56367552 - Lx7 LINE L1 -16 7680 7550 2 1318 255 290 145 0 chr5 96169718 96169842 -56367417 + B1F2 SINE Alu 7 148 -1 2 1318 1082 103 0 0 chr5 96170240 96170386 -56366873 + B1_Mus1 SINE Alu 3 148 0 2 1318 526 226 122 7 chr5 96170445 96170592 -56366667 - Lx7 LINE L1 -500 7196 7033 2 1318 904 225 9 5 chr5 96170615 96170829 -56366430 - L1_Mur2 LINE L1 -207 5670 5456 2 1318 351 0 0 0 chr5 96171680 96171719 -56365540 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1318 195 129 0 0 chr5 96171764 96171795 -56365464 + (T)n Simple_repeat Simple_repeat 1 31 0 2 1318 3010 206 22 0 chr5 96171795 96172535 -56364724 - Lx2B LINE L1 0 6997 6210 2 1318 352 291 33 93 chr5 96175998 96176180 -56361079 + RMER10B LTR ERVL 216 386 -12 2 1318 455 319 42 6 chr5 96176157 96176324 -56360935 + B3A SINE B2 8 180 -18 2 1318 427 312 22 61 chr5 96176589 96176770 -56360489 - B2_Mm2 SINE B2 -21 174 1 2 1318 21 57 0 0 chr5 96177270 96177305 -56359954 + AT_rich Low_complexity Low_complexity 1 35 0 2 1318 5896 232 15 24 chr5 96177713 96178163 -56359096 - Lx5 LINE L1 0 7050 6622 2 1318 1376 210 150 54 chr5 96178163 96178570 -56358689 - RLTR41 LTR ERV1 0 446 1 2 1318 5896 230 22 25 chr5 96178570 96179753 -56357506 - Lx5 LINE L1 -429 6621 5428 2 1318 668 99 0 32 chr5 96179753 96179878 -56357381 - L1Md_F3 LINE L1 -1 6583 6463 2 1318 3001 226 33 26 chr5 96179878 96180108 -56357151 - Lx5 LINE L1 -450 5427 5190 2 1318 189 0 0 0 chr5 96180108 96180129 -56357130 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1318 3001 226 33 26 chr5 96180129 96180287 -56356972 - Lx5 LINE L1 -688 5189 5029 2 1318 1554 281 99 2 chr5 96180289 96180803 -56356456 + Lx5 LINE L1 6443 7006 -44 2 1318 272 160 20 0 chr5 96180849 96180899 -56356360 - Lx5 LINE L1 -557 6493 6443 2 1318 2719 84 0 0 chr5 96180903 96181285 -56355974 + L1_Mm LINE L1 4757 5138 -745 2 1318 7768 52 0 3 chr5 96181320 96182452 -56354807 - L1Md_F2 LINE L1 -2 6580 5453 2 1318 4674 75 1 8 chr5 96182449 96183109 -56354150 + L1Md_F2 LINE L1 4800 5455 -428 2 1318 577 182 36 0 chr5 96183106 96183243 -56354016 - L1_Mur2 LINE L1 -688 5189 5048 2 1318 401 237 10 0 chr5 96183315 96183412 -56353847 + MTC-int LTR MaLR 909 1006 -252 2 1318 186 167 0 0 chr5 96183510 96183546 -56353713 + T-rich Low_complexity Low_complexity 4 39 0 2 1318 4905 121 15 0 chr5 96183555 96184289 -56352970 - L1_Mus3 LINE L1 -9 6629 5885 2 1318 235 222 19 39 chr5 96184380 96184483 -56352776 + (TA)n Simple_repeat Simple_repeat 2 102 0 2 1318 411 155 114 0 chr5 96184800 96184892 -56352367 - MTC LTR MaLR 0 421 268 2 1318 322 256 39 0 chr5 96184918 96184996 -56352263 - Lx5 LINE L1 -170 6880 6800 2 1318 1875 166 76 18 chr5 96185023 96185404 -56351855 + RLTR9E LTR ERVK 7 409 0 2 1318 538 182 10 0 chr5 96185404 96185498 -56351761 - MTC LTR MaLR -103 318 224 2 1318 1614 198 15 6 chr5 96185488 96185818 -56351441 - MTC-int LTR MaLR -451 807 475 2 1318 654 195 38 19 chr5 96185820 96185977 -56351282 + MTD LTR MaLR 260 419 0 2 1318 327 186 86 0 chr5 96185994 96186064 -56351195 - B3 SINE B2 -135 81 6 2 1318 399 299 9 0 chr5 96186078 96186185 -56351074 - MTC LTR MaLR -228 146 39 2 1318 749 73 0 0 chr5 96187023 96187119 -56350140 + B1_Mm SINE Alu 52 147 0 2 1318 501 301 29 35 chr5 96187122 96187574 -56349685 + L1MA4A LINE L1 5476 5927 -376 2 1318 316 147 80 0 chr5 96187943 96188018 -56349241 - Lx9 LINE L1 -1 7643 7563 2 1318 387 0 0 0 chr5 96188024 96188067 -56349192 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1318 337 266 8 8 chr5 96188219 96188344 -56348915 + L1VL1 LINE L1 276 400 -6022 2 1318 346 286 15 8 chr5 96188470 96188604 -56348655 + L1Md_F LINE L1 675 809 -5807 2 1318 23123 125 13 11 chr5 96188606 96192982 -56344277 + L1Md_F LINE L1 725 5105 -778 2 1318 357 177 0 0 chr5 96192979 96193041 -56344218 - L1_Mm LINE L1 -1248 4635 4574 2 1318 6527 86 1 219 chr5 96193035 96193825 -56343434 + L1_Mus1 LINE L1 4642 5424 -459 2 1318 3039 57 0 8 chr5 96193825 96194217 -56343042 + L1Md_F2 LINE L1 6184 6572 -10 2 1318 6862 85 3 77 chr5 96194217 96195691 -56341568 + L1_Mus1 LINE L1 5425 6565 -2 2 1318 808 200 130 0 chr5 96196219 96196419 -56340840 - URR1A DNA MER1_type 0 226 1 2 1318 4969 97 13 6 chr5 96196717 96197429 -56339830 - L1_Mus3 LINE L1 -6 6632 5916 2 1318 314 73 0 5 chr5 96197429 96197482 -56339777 - PB1D9 SINE Alu -94 55 4 2 1318 4812 107 6 1 chr5 96197482 96198283 -56338976 - L1VL1 LINE L1 -1934 1764 964 2 1318 1336 66 55 0 chr5 96198283 96198465 -56338794 - B2_Mm2 SINE B2 -2 193 2 2 1318 3230 149 163 9 chr5 96198465 96199065 -56338194 - L1VL1 LINE L1 -5459 963 246 2 1318 765 260 99 54 chr5 96199221 96199410 -56337849 - MTEb LTR MaLR -21 358 163 2 1318 2777 100 51 0 chr5 96199410 96199801 -56337458 - RLTR10A LTR ERVK 0 411 1 2 1318 765 260 99 54 chr5 96199801 96199924 -56337335 - MTEb LTR MaLR -217 162 32 2 1318 3933 53 0 0 chr5 96199952 96200427 -56336832 + MT2C_Mm LTR ERVL 1 475 0 2 1318 430 242 60 15 chr5 96200788 96200922 -56336337 + B1_Mur3 SINE Alu 2 141 -8 2 1318 667 351 61 26 chr5 96200963 96201308 -56335951 + MTEa LTR MaLR 3 359 -20 2 1318 7307 65 3 10 chr5 96201844 96202885 -56334374 - L1_Mus1 LINE L1 -2 6565 5540 2 1318 612 330 32 92 chr5 96203025 96203395 -56333864 + RMER5 LTR ERV1 13 360 -174 2 1318 2893 98 22 0 chr5 96203396 96203802 -56333457 - L1_Mus1 LINE L1 0 6567 6153 2 1318 3580 50 0 0 chr5 96203802 96204260 -56332999 + L1Md_F2 LINE L1 5654 6111 -471 2 1318 611 231 41 46 chr5 96204280 96204475 -56332784 + RMER5 LTR ERV1 331 524 -10 2 1318 307 0 0 44 chr5 96204476 96204521 -56332738 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2 1318 368 293 39 39 chr5 96204738 96204944 -56332315 - Lx9 LINE L1 -161 7483 7278 2 1318 519 270 29 0 chr5 96205280 96205417 -56331842 - B1F SINE Alu -7 142 2 2 1318 340 325 93 10 chr5 96205522 96205715 -56331544 - ID_B1 SINE B4 -11 213 5 2 1318 252 180 0 0 chr5 96205892 96205943 -56331316 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1318 585 0 0 0 chr5 96205943 96206008 -56331251 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1318 252 180 0 0 chr5 96206008 96206017 -56331242 + (TG)n Simple_repeat Simple_repeat 1 9 0 2 1318 908 153 86 0 chr5 96206017 96206180 -56331079 + MTC LTR MaLR 12 188 -233 2 164 2601 233 105 59 chr5 96206213 96207131 -56330128 + MT-int LTR MaLR 4 963 -135 2 1319 488 266 93 42 chr5 96207138 96207354 -56329905 - Lx6 LINE L1 -26 7434 7208 2 1319 15750 198 78 14 chr5 96207375 96212065 -56325194 - Lx5 LINE L1 -2 7048 2055 2 1319 234 62 0 0 chr5 96212065 96212097 -56325162 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1319 15750 186 68 16 chr5 96212097 96212390 -56324869 - Lx5 LINE L1 -3823 2054 1723 2 1319 2591 125 52 7 chr5 96212442 96212900 -56324359 - L1_Mur2 LINE L1 -907 4970 4492 2 1319 2425 181 266 32 chr5 96213362 96213868 -56323391 - L1_Mur2 LINE L1 -1378 4499 3810 2 1319 871 102 79 0 chr5 96213868 96213995 -56323264 - B1_Mus2 SINE Alu -10 137 1 2 1319 2425 181 266 32 chr5 96213995 96214263 -56322996 - L1_Mur2 LINE L1 -2068 3809 3544 2 1319 477 271 192 50 chr5 96214263 96214585 -56322674 - RLTR9A LTR ERVK 0 368 1 2 1319 334 143 0 16 chr5 96214587 96214651 -56322608 - L1_Mur2 LINE L1 -2328 3549 3487 2 1319 1117 184 67 22 chr5 96214651 96214874 -56322385 - ORR1A2 LTR MaLR -60 267 35 2 1319 5802 179 52 19 chr5 96214894 96216269 -56320990 - L1_Mur2 LINE L1 -2443 3434 2015 2 1319 561 200 15 23 chr5 96216270 96216403 -56320856 - MYSERV-int LTR ERVK -1429 7530 7399 2 1319 826 181 32 16 chr5 96216446 96216631 -56320628 - B2_Mm2 SINE B2 -6 189 2 2 1319 346 83 0 0 chr5 96216659 96216707 -56320552 - ORR1A4 LTR MaLR -8 321 274 2 1319 404 266 27 40 chr5 96216716 96216865 -56320394 - RLTR12B LTR ERVK -341 187 41 2 1319 1370 243 45 62 chr5 96216887 96217422 -56319837 - MYSERV-int LTR ERVK 0 6550 6025 2 1319 859 235 67 38 chr5 96217503 96217550 -56319709 - L1_Mur2 LINE L1 -3815 2065 2019 2 1319 1001 150 39 6 chr5 96217550 96217731 -56319528 - B2_Mm2 SINE B2 -8 187 1 2 1319 1080 191 29 24 chr5 96217731 96217997 -56319262 - L1_Mur2 LINE L1 -3862 2018 1743 2 1319 5687 104 58 15 chr5 96217986 96219042 -56318217 + L1VL2 LINE L1 38 1127 -2488 2 1319 375 196 91 77 chr5 96219156 96219303 -56317956 - RLTR13D3 LTR ERVK 0 1114 889 2 1319 294 24 0 0 chr5 96220165 96220259 -56317000 - L1_Mus3 LINE L1 0 6638 6581 2 1319 5591 133 9 3 chr5 96220256 96221351 -56315908 - Lx LINE L1 -141 6513 5410 2 1319 2435 148 47 40 chr5 96221354 96221826 -56315433 + MT2C_Mm LTR ERVL 1 475 0 2 1319 1114 244 16 29 chr5 96221827 96222202 -56315057 - L1_Mur2 LINE L1 -859 5018 4649 2 1319 2051 163 18 0 chr5 96222197 96222540 -56314719 - Lx2B LINE L1 -393 6607 6259 2 1319 224 312 83 67 chr5 96222644 96222764 -56314495 - PB1 SINE Alu -5 122 1 2 1319 1337 241 71 80 chr5 96222913 96222984 -56314275 + RMER16 LTR ERVK 60 129 -404 2 1319 1026 96 7 0 chr5 96222984 96223119 -56314140 + B1_Mm SINE Alu 2 137 -10 2 1319 1337 241 71 80 chr5 96223119 96223307 -56313952 + RMER16 LTR ERVK 130 323 -210 2 1319 2222 173 15 29 chr5 96223307 96223718 -56313541 - Lx LINE L1 -7 6647 6243 2 1319 1337 241 71 80 chr5 96223718 96223935 -56313324 + RMER16 LTR ERVK 324 533 0 2 1319 450 96 0 0 chr5 96224539 96224612 -56312647 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1319 1682 244 91 9 chr5 96224612 96225054 -56312205 + Lx7 LINE L1 6902 7379 -317 2 1319 1751 239 24 11 chr5 96225077 96225498 -56311761 - Lx4A LINE L1 0 7058 6630 2 1319 415 197 14 62 chr5 96225493 96225639 -56311620 + Lx7 LINE L1 7373 7511 -185 2 1319 302 213 147 0 chr5 96225737 96225812 -56311447 - RSINE1 SINE B4 -69 96 11 2 1319 541 95 412 21 chr5 96225847 96225944 -56311315 + B1_Mus2 SINE Alu 1 135 -12 2 1319 544 255 13 46 chr5 96225997 96226149 -56311110 - B1_Mm SINE Alu 0 147 1 2 1319 381 268 53 60 chr5 96226177 96226328 -56310931 - B1_Mur4 SINE Alu 0 150 1 3 1319 478 318 8 0 chr5 96226337 96226466 -56310793 - B1_Mur1 SINE Alu -8 141 12 3 1319 302 321 28 28 chr5 96226368 96226477 -56310782 - ID_B1 SINE B4 -37 187 79 3 1319 963 129 7 39 chr5 96226501 96226654 -56310605 + B1_Mus1 SINE Alu 1 148 0 3 1319 584 298 0 0 chr5 96226662 96226813 -56310446 - B3 SINE B2 -5 211 61 3 1319 527 308 77 6 chr5 96227002 96227185 -56310074 - ID_B1 SINE B4 -25 199 4 3 1319 313 263 9 92 chr5 96227438 96227547 -56309712 + PB1D7 SINE Alu 3 102 -18 3 1319 402 21 0 0 chr5 96228209 96228256 -56309003 + (TTTTTG)n Simple_repeat Simple_repeat 6 52 0 3 1319 328 66 51 26 chr5 96228514 96228592 -56308667 + (TTG)n Simple_repeat Simple_repeat 2 81 0 3 1319 337 150 67 0 chr5 96228643 96228703 -56308556 - Lx3B LINE L1 -6 6967 6904 3 1319 3337 205 78 4 chr5 96228723 96229456 -56307803 - Lx2B LINE L1 -11 6989 6203 3 1319 540 30 0 0 chr5 96230276 96230342 -56306917 + (TAA)n Simple_repeat Simple_repeat 2 67 0 3 1319 1068 115 0 0 chr5 96230456 96230595 -56306664 + B1_Mus2 SINE Alu 2 140 -7 3 1319 30 0 0 0 chr5 96230595 96230625 -56306634 + AT_rich Low_complexity Low_complexity 1 30 0 3 1319 1173 89 0 0 chr5 96231864 96232010 -56305249 - B1_Mus2 SINE Alu -1 146 1 3 1319 351 277 18 18 chr5 96234060 96234174 -56303085 + RMER10B LTR ERVL 229 342 -56 3 1319 449 313 42 6 chr5 96234203 96234370 -56302889 + B3A SINE B2 8 180 -18 3 1319 25 0 0 0 chr5 96234405 96234430 -56302829 + AT_rich Low_complexity Low_complexity 1 25 0 3 1319 847 216 39 166 chr5 96234499 96234860 -56302399 - RLTRETN_Mm LTR ERVK 0 322 8 3 1319 620 238 10 62 chr5 96235012 96235205 -56302054 - B2_Mm2 SINE B2 -12 183 1 3 1319 3654 62 23 2 chr5 96235337 96235774 -56301485 - L1_Mus1 LINE L1 0 6567 6122 3 1319 21 57 0 0 chr5 96236161 96236196 -56301063 + AT_rich Low_complexity Low_complexity 1 35 0 3 1319 1266 68 0 0 chr5 96236200 96236348 -56300911 + B1_Mus1 SINE Alu 1 148 0 3 1319 512 184 7 2 chr5 96237549 96237651 -56299608 - Lx5 LINE L1 -121 6929 6774 3 1319 1348 331 46 45 chr5 96237652 96238320 -56298939 + RodERV21-int LTR ERV1 4120 4788 -203 3 1319 747 189 26 7 chr5 96238462 96238616 -56298643 - L1_Mur2 LINE L1 -694 5183 5027 3 1319 2219 225 132 2 chr5 96238618 96238789 -56298470 + Lx5 LINE L1 6443 6627 -423 3 1319 469 0 33 0 chr5 96238789 96238850 -56298409 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1319 2219 225 132 2 chr5 96238850 96239208 -56298051 + Lx5 LINE L1 6628 7040 -10 3 1319 330 307 7 21 chr5 96239251 96239391 -56297868 + Lx6 LINE L1 7211 7348 -112 3 1319 716 176 7 7 chr5 96239391 96239528 -56297731 + MTC-int LTR MaLR 909 1045 -213 3 1319 378 164 82 0 chr5 96240246 96240319 -56296940 - MTC LTR MaLR 0 421 343 3 1319 972 277 32 129 chr5 96240332 96240796 -56296463 + RMER5 LTR ERV1 116 534 0 3 1319 506 322 0 6 chr5 96241118 96241290 -56295969 - B3A SINE B2 -26 172 2 3 1319 30 27 0 0 chr5 96241290 96241327 -56295932 + AT_rich Low_complexity Low_complexity 1 37 0 3 1319 237 167 0 0 chr5 96241425 96241479 -56295780 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1319 208 229 0 0 chr5 96241580 96241628 -56295631 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 3 1319 2830 186 12 41 chr5 96241630 96242197 -56295062 + RLTR31_Mur LTR ERVK 1 551 -2 3 1319 1990 202 32 39 chr5 96242198 96243067 -56294192 + RMER3D-int LTR ERVK 1 1382 -1460 3 1319 5596 201 60 51 chr5 96243169 96244628 -56292631 + RMER3D-int LTR ERVK 422 2841 -1 3 1319 640 132 7 117 chr5 96244629 96244783 -56292476 + RLTR31_Mur LTR ERVK 1 137 -416 3 1319 714 255 41 147 chr5 96244792 96245160 -56292099 + L1VL1 LINE L1 29 357 -6065 3 1319 401 301 19 6 chr5 96245241 96245398 -56291861 + L1VL4 LINE L1 675 833 -5783 3 1319 3140 137 16 4 chr5 96245377 96246343 -56290916 + L1VL4 LINE L1 725 1708 -4175 3 1319 4471 157 27 27 chr5 96246352 96247198 -56290061 + RLTR13A LTR ERVK 10 855 0 3 1319 20837 105 13 16 chr5 96247198 96250361 -56286898 + L1VL4 LINE L1 1704 4857 -1026 3 1319 38508 22 2 7 chr5 96250360 96255951 -56281308 + L1Md_A LINE L1 25 5586 -297 3 1319 8977 34 1 0 chr5 96255951 96256946 -56280313 + L1Md_A LINE L1 5587 6582 0 3 1319 4230 110 19 2 chr5 96256965 96257593 -56279666 + L1VL4 LINE L1 4844 5482 -401 3 1319 2575 85 3 0 chr5 96257593 96257921 -56279338 + L1_Mus1 LINE L1 6238 6566 -1 3 1319 1448 167 12 4 chr5 96257924 96258182 -56279077 + RLTR31_Mur LTR ERVK 117 376 -177 3 1319 428 202 12 0 chr5 96258557 96258641 -56278618 - B3 SINE B2 -131 85 1 3 1319 688 217 24 94 chr5 96258651 96258804 -56278455 - Lx7 LINE L1 -1 7695 7547 3 1319 567 224 112 0 chr5 96258804 96258929 -56278330 + B1_Mm SINE Alu 3 141 -6 3 1319 688 217 24 94 chr5 96258929 96259029 -56278230 - Lx7 LINE L1 -150 7546 7460 3 1319 1171 79 7 0 chr5 96259054 96259194 -56278065 + B1_Mm SINE Alu 1 141 -6 3 1319 243 0 0 0 chr5 96259196 96259223 -56278036 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 3 1319 1149 269 19 88 chr5 96259265 96259697 -56277562 - Lx7 LINE L1 -273 7423 7022 3 1319 8133 216 28 32 chr5 96259706 96260499 -56276760 - L1_Mur2 LINE L1 -207 5670 4884 3 1319 1512 69 27 0 chr5 96260499 96260687 -56276572 + B2_Mm1t SINE B2 1 193 0 3 1319 8133 216 28 32 chr5 96260687 96261160 -56276099 - L1_Mur2 LINE L1 -994 4883 4431 3 1319 1098 145 50 0 chr5 96261160 96261339 -56275920 - B2_Mm2 SINE B2 -6 189 2 3 1319 8133 216 28 32 chr5 96261339 96262151 -56275108 - L1_Mur2 LINE L1 -1447 4430 3598 3 1319 291 226 0 0 chr5 96262151 96262253 -56275006 + (TAGA)n Simple_repeat Simple_repeat 2 103 0 3 1319 443 274 82 41 chr5 96262545 96262716 -56274543 - B3A SINE B2 -13 185 8 3 1319 374 183 0 0 chr5 96263370 96263441 -56273818 + RLTR19 LTR ERVK 1 71 -428 3 1319 417 250 187 13 chr5 96263569 96263719 -56273540 + RLTR19 LTR ERVK 115 290 -209 3 1319 394 309 39 7 chr5 96263741 96263894 -56273365 + RLTR19 LTR ERVK 339 496 -3 3 1319 186 242 106 0 chr5 96266014 96266080 -56271179 + L4 LINE RTE 1250 1322 -707 3 1319 1120 109 0 0 chr5 96266580 96266727 -56270532 + B1_Mus2 SINE Alu 1 147 0 3 1319 253 250 75 0 chr5 96267012 96267092 -56270167 + RMER1C Other Other 1256 1341 -1 3 1319 220 164 15 15 chr5 96267141 96267209 -56270050 + A-rich Low_complexity Low_complexity 2 69 0 3 1319 216 154 39 0 chr5 96267603 96267655 -56269604 + (ATTG)n Simple_repeat Simple_repeat 2 55 0 3 1319 238 324 34 85 chr5 96267692 96267810 -56269449 - PB1D7 SINE Alu -8 112 1 3 1319 305 338 61 24 chr5 96268054 96268266 -56268993 + ID_B1 SINE B4 5 224 0 3 1319 246 381 77 72 chr5 96268366 96268547 -56268712 + B3A SINE B2 2 183 -15 3 1319 1380 254 67 12 chr5 96268583 96268985 -56268274 + Lx7 LINE L1 6940 7363 -333 3 1319 505 202 0 0 chr5 96269036 96269135 -56268124 - Lx4A LINE L1 -7 7051 6953 3 1319 588 255 127 8 chr5 96269135 96269372 -56267887 - RLTR10A LTR ERVK 0 411 147 3 1319 347 267 0 0 chr5 96269423 96269498 -56267761 - Lx4A LINE L1 -98 6960 6886 3 1319 1291 124 38 0 chr5 96269705 96269914 -56267345 + RMER2 LTR ERV1 31 247 -320 3 1319 207 114 0 0 chr5 96270646 96270681 -56266578 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1319 27 29 0 0 chr5 96270728 96270762 -56266497 + AT_rich Low_complexity Low_complexity 1 34 0 3 1319 14540 58 28 3 chr5 96270762 96273332 -56263927 - L1Md_F2 LINE L1 0 6582 3937 3 1319 345 206 0 0 chr5 96273346 96273419 -56263840 - Lx3B LINE L1 -2 6971 6899 3 1319 334 191 0 0 chr5 96273430 96273498 -56263761 - Lx2 LINE L1 0 6997 6930 3 1319 21 0 0 0 chr5 96273937 96273958 -56263301 + AT_rich Low_complexity Low_complexity 1 21 0 3 1319 326 264 45 84 chr5 96274296 96274474 -56262785 + RMER10B LTR ERVL 216 386 -12 3 1319 390 325 65 18 chr5 96274452 96274621 -56262638 + B3A SINE B2 9 185 -13 3 1319 2755 80 1 4 chr5 96274785 96275154 -56262105 - L1_Mus2 LINE L1 -302 6698 6193 3 1319 311 127 151 27 chr5 96275136 96275209 -56262050 + MusHAL1 LINE L1 264 345 -2367 3 1319 23 33 0 0 chr5 96275717 96275747 -56261512 + AT_rich Low_complexity Low_complexity 1 30 0 3 1319 3803 244 14 22 chr5 96276153 96277066 -56260193 - Lx5 LINE L1 0 7050 6145 3 1319 735 183 56 0 chr5 96277073 96277215 -56260044 - L1_Mur2 LINE L1 -378 5499 5350 3 1319 8646 86 4 1 chr5 96277212 96279082 -56258177 - L1_Mus2 LINE L1 0 6566 4689 3 1319 3710 158 49 18 chr5 96279258 96279969 -56257290 - MYSERV6-int LTR ERVK -6180 2779 2047 3 1319 933 189 156 15 chr5 96279981 96280307 -56256952 - RMER6B LTR ERVK -89 372 1 3 1319 4593 118 49 78 chr5 96280349 96281182 -56256077 + RMER17D2 LTR ERVK 1 809 0 3 1319 331 292 63 48 chr5 96282287 96282413 -56254846 - B3A SINE B2 -70 128 1 3 1319 225 326 0 0 chr5 96282448 96282497 -56254762 - B1F2 SINE Alu -96 53 5 3 1319 308 298 111 16 chr5 96283332 96283458 -56253801 - ID_B1 SINE B4 -3 221 84 3 1319 242 344 21 11 chr5 96284032 96284126 -56253133 + PB1D7 SINE Alu 9 103 -17 3 1319 288 342 9 35 chr5 96285085 96285200 -56252059 + RSINE1 SINE B4 20 131 -34 3 1319 2289 169 40 0 chr5 96285209 96285588 -56251671 - ORR1B1 LTR MaLR 0 394 1 3 1319 35027 15 3 8 chr5 96285625 96290660 -56246599 + L1Md_A LINE L1 153 5160 -723 3 1319 180 0 0 0 chr5 96291912 96291932 -56245327 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1319 3978 5 0 0 chr5 96291932 96292372 -56244887 + L1Md_A LINE L1 5146 5585 -298 3 1319 9469 11 0 0 chr5 96292373 96293368 -56243891 + L1Md_A LINE L1 5587 6581 -1 3 1319 336 282 33 25 chr5 96293440 96293560 -56243699 - Lx8 LINE L1 -591 6882 6762 3 1319 515 156 90 18 chr5 96294981 96295092 -56242167 + RMER1C Other Other 1223 1341 -1 3 1319 2472 87 6 58 chr5 96295309 96295652 -56241607 + ORR1A2 LTR MaLR 3 327 0 3 1319 1667 229 32 27 chr5 96295831 96296203 -56241056 - MTE2b LTR MaLR -5 374 1 3 1319 929 75 0 0 chr5 96296352 96296459 -56240800 + U6 snRNA snRNA 1 107 0 3 1319 513 159 0 26 chr5 96296459 96296570 -56240689 + L1_Mus4 LINE L1 6524 6632 -4 3 1319 1093 208 39 5 chr5 96296942 96297150 -56240109 + B3 SINE B2 2 216 0 3 1319 774 214 92 46 chr5 96297166 96297266 -56239993 + Lx9 LINE L1 7385 7478 -166 3 1319 360 64 0 0 chr5 96297266 96297313 -56239946 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1319 774 214 92 46 chr5 96297313 96297452 -56239807 + Lx9 LINE L1 7479 7635 -9 3 1319 28 0 0 0 chr5 96298467 96298495 -56238764 + AT_rich Low_complexity Low_complexity 1 28 0 4 1319 24 0 0 0 chr5 96298873 96298897 -56238362 + AT_rich Low_complexity Low_complexity 1 24 0 4 1319 414 0 0 0 chr5 96299359 96299405 -56237854 + (TTG)n Simple_repeat Simple_repeat 2 47 0 4 1319 1228 57 0 0 chr5 96300377 96300518 -56236741 - B1_Mus1 SINE Alu -5 143 3 4 1319 922 296 112 62 chr5 96302060 96303465 -56233794 + L1M2 LINE L1 2235 3713 -3132 4 1319 542 208 9 0 chr5 96303474 96303580 -56233679 + MTD LTR MaLR 1 107 -312 4 1319 4382 114 106 20 chr5 96303580 96304325 -56232934 + RMER17D2 LTR ERVK 1 809 0 4 1319 3922 93 35 4 chr5 96304343 96304862 -56232397 - L1_Mus4 LINE L1 -19 6617 6083 4 1319 4527 99 21 1 chr5 96304864 96305705 -56231554 + L1_Mus4 LINE L1 5195 6056 -580 4 1319 1389 197 58 51 chr5 96305705 96306016 -56231243 + MTD LTR MaLR 107 419 0 4 1319 957 318 53 37 chr5 96306196 96306683 -56230576 + Lx9 LINE L1 6968 7462 -182 4 1319 429 312 55 4 chr5 96306819 96307076 -56230183 + L1M2 LINE L1 3165 3434 -2709 4 1319 942 253 60 5 chr5 96307612 96307811 -56229448 + B3 SINE B2 2 211 -5 4 1319 292 404 133 5 chr5 96308018 96308446 -56228813 - L4 LINE RTE -254 1775 1293 4 1319 347 0 23 0 chr5 96308621 96308664 -56228595 + (TC)n Simple_repeat Simple_repeat 2 45 0 4 1319 897 74 0 0 chr5 96308664 96308798 -56228461 + (TG)n Simple_repeat Simple_repeat 2 136 0 4 1319 241 301 159 58 chr5 96308842 96309050 -56228209 - MLT1A LTR MaLR -77 297 69 4 1319 280 304 12 12 chr5 96309576 96309656 -56227603 + ID2 SINE ID 4 83 0 4 1319 540 45 0 0 chr5 96309789 96309856 -56227403 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1319 23 0 0 0 chr5 96311077 96311100 -56226159 + AT_rich Low_complexity Low_complexity 1 23 0 4 1319 411 281 303 76 chr5 96312068 96312381 -56224878 + MLT1A0 LTR MaLR 1 384 -6 4 1319 234 0 0 0 chr5 96312627 96312653 -56224606 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1319 487 271 54 8 chr5 96312669 96312799 -56224460 - B4A SINE B4 -4 288 153 4 1319 744 12 0 0 chr5 96312813 96312898 -56224361 + (TC)n Simple_repeat Simple_repeat 1 85 0 4 1319 35164 76 13 6 chr5 96312898 96318827 -56218432 - L1Md_F2 LINE L1 -22 6560 587 4 1319 307 307 37 50 chr5 96318828 96318989 -56218270 - B4A SINE B4 -132 160 2 4 1319 229 329 84 14 chr5 96319175 96319246 -56218013 + LTR16A1 LTR ERVL 1 76 -404 4 1319 891 297 105 56 chr5 96319485 96319934 -56217325 - RMER5 LTR ERV1 -31 503 33 4 1319 255 342 42 8 chr5 96320552 96320670 -56216589 + HERV16-int LTR ERVL 1248 1369 -3627 4 1319 487 338 62 66 chr5 96321289 96321593 -56215666 - ORR1E LTR MaLR -36 323 21 4 1319 3298 136 5 91 chr5 96322082 96322665 -56214594 - Lx4B LINE L1 -4 7054 6522 4 1319 2523 182 30 17 chr5 96322665 96323135 -56214124 - RMER19B LTR ERVK -426 476 1 4 1319 401 319 135 81 chr5 96323135 96323481 -56213778 + LTR16A1 LTR ERVL 91 455 -1 4 1319 708 305 157 67 chr5 96323858 96324015 -56213244 - B4 SINE B4 0 292 104 4 1319 5445 52 3 8 chr5 96324015 96324660 -56212599 + L1_Mus1 LINE L1 5926 6567 0 4 1319 708 305 157 67 chr5 96324660 96324769 -56212490 - B4 SINE B4 -189 103 2 4 1319 349 363 61 48 chr5 96324822 96324987 -56212272 + MER96 DNA hAT 8 174 -1 4 1319 1026 208 35 25 chr5 96326082 96326284 -56210975 - B3 SINE B2 -11 205 2 4 1319 2210 261 11 19 chr5 96327400 96328037 -56209222 + Lx6 LINE L1 6458 7434 -26 4 1319 857 98 15 0 chr5 96329107 96329240 -56208019 + (GGAA)n Simple_repeat Simple_repeat 2 136 0 4 1319 914 181 0 0 chr5 96329801 96329939 -56207320 + B1_Mus2 SINE Alu 3 140 -7 4 1319 738 78 0 0 chr5 96329939 96330041 -56207218 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 4 1319 342 0 0 0 chr5 96331086 96331124 -56206135 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1319 926 266 70 77 chr5 96331617 96331902 -56205357 - B4A SINE B4 -2 290 8 4 1319 243 248 86 72 chr5 96332484 96332623 -56204636 + Lx8 LINE L1 5855 5995 -1478 4 1319 452 254 75 0 chr5 96336806 96336940 -56200319 + RMER15 LTR ERVL 432 575 0 4 1320 237 265 73 0 chr5 96339187 96339255 -56198004 + LTR33 LTR ERVL 100 172 -343 4 1320 3083 146 45 87 chr5 96340185 96340831 -56196428 - RLTR26 LTR ERVK 0 642 24 4 1320 817 305 84 4 chr5 96341062 96341325 -56195934 + B4A SINE B4 9 292 0 4 1320 2976 57 57 5 chr5 96342527 96342914 -56194345 + MTB_Mm LTR MaLR 1 407 0 4 1320 313 284 27 0 chr5 96343593 96343667 -56193592 + RSINE1 SINE B4 5 80 -85 4 1320 843 164 20 0 chr5 96343944 96344090 -56193169 + B1_Mur3 SINE Alu 1 149 0 4 1320 492 48 0 0 chr5 96344094 96344157 -56193102 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 4 1320 180 258 58 43 chr5 96345444 96345513 -56191746 + MIR3 SINE MIR 113 182 -26 4 1320 475 296 70 4 chr5 96346561 96346788 -56190471 + L1MD LINE L1 5351 5592 -767 4 1320 757 254 29 19 chr5 96346790 96346999 -56190260 - B3 SINE B2 -5 211 1 4 1320 1203 284 7 3 chr5 96347044 96347341 -56189918 + Lx8 LINE L1 6592 6889 -584 4 1320 378 0 0 0 chr5 96347732 96347774 -56189485 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1320 385 264 23 0 chr5 96347775 96347862 -56189397 - B3 SINE B2 -50 166 78 4 1320 436 299 26 0 chr5 96347855 96347972 -56189287 + ID_B1 SINE B4 89 208 -16 4 1320 198 0 0 0 chr5 96347972 96347994 -56189265 + (CAT)n Simple_repeat Simple_repeat 3 24 0 4 1320 1270 34 0 0 chr5 96348152 96348299 -56188960 + B1_Mm SINE Alu 1 147 0 4 1320 693 266 77 10 chr5 96349465 96349659 -56187600 + B4A SINE B4 85 291 -1 4 1320 2498 164 6 48 chr5 96349929 96350427 -56186832 - Lx4B LINE L1 0 7058 6582 4 1320 227 293 29 58 chr5 96350782 96350956 -56186303 + L1MD LINE L1 2499 2667 -3479 4 1320 890 303 90 21 chr5 96351015 96351673 -56185586 + L1M5 LINE L1 2635 3337 -2809 4 1320 487 327 19 38 chr5 96351715 96351874 -56185385 + ID_B1 SINE B4 61 216 -8 4 1320 253 298 133 12 chr5 96351937 96352110 -56185149 + L1ME1 LINE L1 5881 6074 -105 4 1320 741 58 0 0 chr5 96352119 96352222 -56185037 + (TG)n Simple_repeat Simple_repeat 1 103 0 4 1320 409 34 34 0 chr5 96352294 96352353 -56184906 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1320 22 94 0 0 chr5 96352388 96352452 -56184807 + AT_rich Low_complexity Low_complexity 1 64 0 4 1320 541 313 36 18 chr5 96353186 96353407 -56183852 - HERV16-int LTR ERVL -3853 1143 919 4 1320 211 182 0 0 chr5 96353410 96353443 -56183816 + polypyrimidine Low_complexity Low_complexity 1 33 0 4 1320 421 268 48 34 chr5 96355016 96355163 -56182096 + MER5A1 DNA MER1_type 13 161 -5 4 1320 38 0 0 20 chr5 96355167 96355196 -56182063 + AT_rich Low_complexity Low_complexity 1 29 0 4 1320 976 129 10 110 chr5 96355196 96355274 -56181985 + B2_Mm2 SINE B2 2 79 -116 4 1320 216 0 0 0 chr5 96355274 96355298 -56181961 + (CAATT)n Simple_repeat Simple_repeat 5 28 0 4 1320 976 129 10 110 chr5 96355298 96355419 -56181840 + B2_Mm2 SINE B2 80 181 -14 4 1320 38 0 0 20 chr5 96355419 96355438 -56181821 + AT_rich Low_complexity Low_complexity 1 19 0 4 1320 274 378 55 25 chr5 96355747 96355948 -56181311 + LTR16C LTR ERVL 187 393 -96 4 1320 215 91 0 0 chr5 96355968 96356001 -56181258 + B3A SINE B2 1 33 -165 4 1320 39310 5 0 1 chr5 96356004 96361584 -56175675 + L1Md_A LINE L1 12 5586 -297 4 1320 9160 6 0 0 chr5 96361584 96362580 -56174679 + L1Md_A LINE L1 5587 6582 0 4 1320 727 235 61 6 chr5 96362585 96362765 -56174494 + B3 SINE B2 27 216 0 4 1320 991 97 7 27 chr5 96362904 96363052 -56174207 + B1_Mus2 SINE Alu 2 146 -1 4 1320 188 111 28 0 chr5 96364672 96364708 -56172551 + (TATG)n Simple_repeat Simple_repeat 3 39 0 4 1320 254 95 24 0 chr5 96364828 96364870 -56172389 + (TATG)n Simple_repeat Simple_repeat 1 43 0 4 1320 737 250 80 63 chr5 96364870 96365156 -56172103 - B4A SINE B4 -1 291 1 4 1320 399 261 49 7 chr5 96365622 96365765 -56171494 + L1MB8 LINE L1 6027 6175 -3 4 1320 300 128 71 30 chr5 96368562 96368731 -56168528 + (TTATA)n Simple_repeat Simple_repeat 3 178 0 4 1320 327 265 24 12 chr5 96369549 96369633 -56167626 - RSINE1 SINE B4 -79 86 2 4 1320 1132 192 131 32 chr5 96369916 96370297 -56166962 - RMER17C LTR ERVK 0 410 16 4 1320 2613 148 34 16 chr5 96371088 96371589 -56165670 + RLTR28 LTR ERVL 2 511 -13 4 1320 216 0 0 0 chr5 96372478 96372502 -56164757 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4 1320 378 0 0 0 chr5 96372667 96372709 -56164550 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1320 932 259 29 8 chr5 96372719 96372964 -56164295 - B4A SINE B4 0 292 43 4 1320 1806 133 11 138 chr5 96373376 96373846 -56163413 - RMER17C LTR ERVK 0 410 1 4 1320 382 356 38 0 chr5 96375620 96375780 -56161479 + MER63A DNA AcHobo 30 195 -15 4 1320 225 171 24 0 chr5 96376692 96376733 -56160526 + C-rich Low_complexity Low_complexity 1 42 0 4 1320 21 36 0 0 chr5 96377291 96377319 -56159940 + AT_rich Low_complexity Low_complexity 1 28 0 4 1320 819 190 123 28 chr5 96377989 96378168 -56159091 + B3A SINE B2 3 198 0 4 1320 21 57 0 0 chr5 96378170 96378205 -56159054 + AT_rich Low_complexity Low_complexity 1 35 0 4 1320 22 35 0 0 chr5 96378284 96378313 -56158946 + AT_rich Low_complexity Low_complexity 1 29 0 4 1320 621 40 0 0 chr5 96379742 96379818 -56157441 + (TTCC)n Simple_repeat Simple_repeat 3 78 0 4 1320 1597 128 4 8 chr5 96379821 96380081 -56157178 - Lx LINE L1 -8 6646 6388 4 1320 3122 78 17 0 chr5 96380104 96380512 -56156747 + Lx LINE L1 5587 6001 -653 4 1320 354 284 22 29 chr5 96381329 96381467 -56155792 - B1F SINE Alu 0 149 13 5 1320 548 286 26 7 chr5 96381681 96381836 -56155423 + RSINE1 SINE B4 4 161 -4 5 1320 23 0 0 0 chr5 96381878 96381901 -56155358 + AT_rich Low_complexity Low_complexity 1 23 0 5 1320 5170 62 5 0 chr5 96382314 96382958 -56154301 - L1_Mus2 LINE L1 -220 6346 5700 5 1320 6504 37 1 25 chr5 96383148 96383946 -56153313 + L1Md_F2 LINE L1 5804 6582 0 5 1320 253 289 12 50 chr5 96384431 96384511 -56152748 + ID2 SINE ID 3 79 -73 5 1320 195 218 0 0 chr5 96384511 96384566 -56152693 + GA-rich Low_complexity Low_complexity 1 55 0 5 1320 276 30 0 0 chr5 96384688 96384721 -56152538 + (TC)n Simple_repeat Simple_repeat 2 34 0 5 1320 513 0 0 0 chr5 96384723 96384780 -56152479 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1320 219 274 91 40 chr5 96385278 96385377 -56151882 - L2b LINE L2 -13 3362 3259 5 1320 180 0 0 0 chr5 96387936 96387956 -56149303 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1320 299 330 71 94 chr5 96388165 96388389 -56148870 + MIRb SINE MIR 26 244 -24 5 1320 195 42 0 0 chr5 96389427 96389451 -56147808 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1320 437 323 163 15 chr5 96390605 96390843 -56146416 - B4 SINE B4 0 292 8 5 1320 222 150 0 0 chr5 96390869 96390909 -56146350 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 5 1320 545 203 152 30 chr5 96390912 96391044 -56146215 - B1F SINE Alu -1 148 1 5 1320 279 354 19 11 chr5 96391401 96391521 -56145738 - MIRb SINE MIR -135 127 3 5 1320 274 285 119 75 chr5 96392484 96392685 -56144574 + L1MA6 LINE L1 6091 6300 0 5 1320 828 306 43 89 chr5 96393655 96394140 -56143119 - L1ME1 LINE L1 -226 5953 5491 5 1320 230 225 108 40 chr5 96394221 96394295 -56142964 - MTEa LTR MaLR -23 356 278 5 1320 473 294 121 55 chr5 96394515 96394896 -56142363 - L1ME1 LINE L1 -1302 4844 4439 5 1320 1445 79 17 0 chr5 96395371 96395548 -56141711 - B2_Mm2 SINE B2 -14 181 2 5 1320 609 275 28 5 chr5 96395997 96396209 -56141050 - L1MA7 LINE L1 0 6291 6075 5 1320 234 316 66 0 chr5 96396240 96396316 -56140943 - MLT1H LTR MaLR -468 81 1 5 1320 445 72 43 0 chr5 96396523 96396592 -56140667 - L1Md_F2 LINE L1 -3 6579 6508 5 1320 364 333 97 74 chr5 96397082 96397351 -56139908 + L2b LINE L2 3097 3371 -4 5 1320 339 275 21 48 chr5 96397692 96397837 -56139422 + Charlie13b DNA Charlie 228 368 -144 5 1320 1181 147 11 11 chr5 96398375 96398561 -56138698 - B2_Mm1t SINE B2 -7 186 1 5 1320 5876 79 65 17 chr5 96398594 96399379 -56137880 - L1Md_F2 LINE L1 -12 6570 5748 5 1320 458 260 19 9 chr5 96399416 96399521 -56137738 - RSINE1 SINE B4 -37 128 23 5 1320 410 0 20 0 chr5 96399539 96399589 -56137670 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 5 1320 1103 89 0 0 chr5 96399591 96399726 -56137533 - B1_Mus1 SINE Alu -13 135 1 5 1320 216 0 0 0 chr5 96399931 96399955 -56137304 + (CCCCCA)n Simple_repeat Simple_repeat 6 29 0 5 1320 481 285 77 26 chr5 96400496 96400651 -56136608 + RSINE1 SINE B4 3 165 0 5 1320 23 33 0 0 chr5 96400651 96400681 -56136578 + AT_rich Low_complexity Low_complexity 1 30 0 5 1320 437 0 19 0 chr5 96401775 96401828 -56135431 + (TC)n Simple_repeat Simple_repeat 1 54 0 5 1320 574 198 0 21 chr5 96401829 96402120 -56135139 + (CA)n Simple_repeat Simple_repeat 1 284 0 5 1320 5745 36 0 2 chr5 96402265 96402910 -56134349 + L1Md_F3 LINE L1 5941 6584 0 5 1320 228 67 0 0 chr5 96403052 96403082 -56134177 + (CGGA)n Simple_repeat Simple_repeat 1 30 0 5 1320 225 0 0 0 chr5 96404118 96404143 -56133116 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1320 496 216 103 8 chr5 96406008 96406125 -56131134 - ORR1D1 LTR MaLR -245 129 2 5 1320 368 172 75 2 chr5 96406190 96406277 -56130982 + B1F SINE Alu 25 117 0 5 1320 235 268 183 0 chr5 96406301 96406383 -56130876 - L1M3de LINE L1 -5610 1043 947 5 1320 750 345 127 21 chr5 96406543 96407102 -56130157 - L1M3de LINE L1 -6122 531 3 5 1320 402 390 52 11 chr5 96407309 96407657 -56129602 + HERV16-int LTR ERVL 1095 1456 -3540 5 1320 1970 171 66 33 chr5 96407803 96408004 -56129255 - ORR1D1 LTR MaLR 0 374 161 5 1320 587 14 14 0 chr5 96408004 96408076 -56129183 + (TAGA)n Simple_repeat Simple_repeat 3 75 0 5 1320 1970 171 66 33 chr5 96408076 96408236 -56129023 - ORR1D1 LTR MaLR -214 160 1 5 1320 1488 168 34 14 chr5 96408236 96408532 -56128727 - ORR1D1-int LTR MaLR 0 1370 1069 5 1320 227 369 77 43 chr5 96408830 96409037 -56128222 + MIR SINE MIR 49 262 0 5 1320 332 322 94 0 chr5 96409371 96409542 -56127717 + B3A SINE B2 9 195 -3 5 1320 263 156 106 30 chr5 96410041 96410107 -56127152 - Ricksha_c DNA MuDR -1131 917 847 5 1320 573 115 0 0 chr5 96410154 96410241 -56127018 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 1320 207 0 0 0 chr5 96410241 96410264 -56126995 + (GA)n Simple_repeat Simple_repeat 1 23 0 5 1320 321 338 46 46 chr5 96410264 96410416 -56126843 - MLT2B1 LTR ERVL -48 519 368 5 1320 479 237 0 0 chr5 96410370 96410463 -56126796 - PB1D9 SINE Alu -18 102 10 5 1320 427 342 43 5 chr5 96411012 96411197 -56126062 - RMER15 LTR ERVL -13 562 371 5 1320 495 252 88 75 chr5 96411370 96411597 -56125662 + MLT2C1 LTR ERVL 83 312 -85 5 1320 708 318 96 10 chr5 96411598 96411890 -56125369 + MER2 DNA MER2_type 9 325 -20 5 1320 459 35 0 0 chr5 96411916 96411973 -56125286 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1320 29 70 0 0 chr5 96412797 96412854 -56124405 + AT_rich Low_complexity Low_complexity 1 57 0 5 1320 402 21 0 0 chr5 96413903 96413950 -56123309 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1320 378 287 18 9 chr5 96414500 96414609 -56122650 + PB1D10 SINE Alu 2 111 -6 5 1320 206 70 51 34 chr5 96414876 96414935 -56122324 + T-rich Low_complexity Low_complexity 2 61 0 5 1320 662 257 54 7 chr5 96415388 96415537 -56121722 + B3A SINE B2 5 160 -38 5 1320 361 213 13 0 chr5 96415543 96415618 -56121641 - L1M7 LINE L1 -4598 1620 1545 5 1320 4446 77 0 45 chr5 96416344 96416928 -56120331 + L1_Mus1 LINE L1 6010 6567 0 5 1320 201 387 9 0 chr5 96416957 96417068 -56120191 - MIR3 SINE MIR -6 202 91 5 1320 1382 74 23 6 chr5 96417699 96417876 -56119383 + B2_Mm2 SINE B2 2 181 -14 5 1320 1834 120 14 25 chr5 96419353 96419635 -56117624 - Lx LINE L1 -1 6653 6375 5 1320 2309 111 6 6 chr5 96419635 96419989 -56117270 + L1_Mm LINE L1 3829 4182 -1701 5 1320 22 0 0 0 chr5 96421541 96421563 -56115696 + AT_rich Low_complexity Low_complexity 1 22 0 5 1320 257 364 41 20 chr5 96422122 96422268 -56114991 - B1_Mur3 SINE Alu 0 149 1 5 1320 680 298 19 42 chr5 96422268 96422352 -56114907 - ID SINE ID -141 83 5 5 1320 304 268 120 16 chr5 96422760 96422885 -56114374 - HAL1 LINE L1 -136 2371 2234 5 1320 268 250 52 13 chr5 96423025 96423102 -56114157 - L1M3 LINE L1 -432 5739 5660 5 1320 7124 82 31 1 chr5 96423045 96424280 -56112979 + L1_Mus1 LINE L1 5315 6567 0 5 1320 1231 68 0 0 chr5 96424345 96424492 -56112767 - B1_Mus1 SINE Alu 0 148 2 5 1320 272 238 81 23 chr5 96424493 96424579 -56112680 - MLT1F2-int LTR MaLR -1198 173 83 5 1320 262 350 48 39 chr5 96424613 96424717 -56112542 + RSINE1 SINE B4 61 165 0 5 1320 4308 55 74 0 chr5 96425173 96425697 -56111562 - Lx3_Mus LINE L1 0 7009 6447 5 1320 1061 324 67 78 chr5 96425814 96426369 -56110890 - MLT1F2 LTR MaLR -8 552 4 5 1320 374 281 58 68 chr5 96426436 96426676 -56110583 - MIRb SINE MIR -34 234 7 5 1320 422 228 22 0 chr5 96427254 96427346 -56109913 + PB1D9 SINE Alu 1 94 -26 5 1320 1862 139 40 108 chr5 96427356 96427736 -56109523 - ORR1B1 LTR MaLR 0 394 41 5 1320 511 296 57 103 chr5 96427976 96428190 -56109069 - L1ME1 LINE L1 -306 5873 5672 5 1320 333 0 0 0 chr5 96428190 96428227 -56109032 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1320 516 275 47 71 chr5 96428227 96428574 -56108685 - L1ME1 LINE L1 -508 5671 5338 5 1320 360 0 0 0 chr5 96428827 96428867 -56108392 + (A)n Simple_repeat Simple_repeat 1 40 0 5 1320 341 291 145 29 chr5 96429535 96429822 -56107437 - RLTR22_Mur LTR ERVK -37 1811 1595 5 1320 677 222 26 110 chr5 96429894 96430122 -56107137 - RLTR22_Mus LTR ERVK -1006 802 594 5 1320 1503 236 66 98 chr5 96430175 96430777 -56106482 - RLTR22_Mur LTR ERVK -1265 583 1 5 1320 22 0 0 0 chr5 96432951 96432973 -56104286 + AT_rich Low_complexity Low_complexity 1 22 0 5 1320 441 0 0 0 chr5 96432991 96433040 -56104219 + (TTA)n Simple_repeat Simple_repeat 3 51 0 5 1320 1227 83 0 0 chr5 96433041 96433186 -56104073 - B1_Mm SINE Alu -2 145 1 5 1320 1097 213 46 0 chr5 96433266 96433463 -56103796 + B3 SINE B2 1 206 -10 5 1320 438 280 131 36 chr5 96433676 96434035 -56103224 - L1MA8 LINE L1 -5 6286 5894 5 1320 1064 247 151 79 chr5 96434130 96435095 -56102164 - L1MA6 LINE L1 -296 6004 4975 5 1320 608 17 76 8 chr5 96435127 96435246 -56102013 + (GTTTG)n Simple_repeat Simple_repeat 2 128 0 5 1320 338 272 12 0 chr5 96435246 96435327 -56101932 - BC1_Mm scRNA scRNA -65 87 6 5 1320 229 269 49 37 chr5 96436333 96436414 -56100845 - B1_Mur3 SINE Alu 0 149 68 5 1320 839 216 133 26 chr5 96436344 96436498 -56100761 - ID_B1 SINE B4 -8 216 38 5 1320 1536 229 88 3 chr5 96436498 96436839 -56100420 + ORR1D2 LTR MaLR 1 370 0 5 1320 839 216 133 26 chr5 96436839 96436879 -56100380 - ID SINE ID -187 37 1 5 1320 840 168 249 0 chr5 96437074 96437247 -56100012 + B3 SINE B2 1 216 0 5 1320 2123 161 155 36 chr5 96437267 96437340 -56099919 - RLTR11A LTR ERVK 0 528 450 5 1320 432 0 0 0 chr5 96437340 96437388 -56099871 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1320 2123 161 155 36 chr5 96437388 96437785 -56099474 - RLTR11A LTR ERVK -79 449 2 5 1320 360 270 80 18 chr5 96438408 96438521 -56098738 + MER103 DNA DNA 1 120 -46 6 1320 336 94 0 0 chr5 96440090 96440143 -56097116 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1320 639 39 0 0 chr5 96440201 96440279 -56096980 + (GA)n Simple_repeat Simple_repeat 2 79 0 6 1320 656 250 168 84 chr5 96440447 96440709 -56096550 - B4A SINE B4 -5 287 4 6 1320 1259 263 100 68 chr5 96441140 96441983 -56095276 + L1MB7 LINE L1 5304 6173 -11 6 1320 245 222 0 85 chr5 96442623 96442682 -56094577 - RSINE1 SINE B4 -110 55 2 6 1320 180 0 0 0 chr5 96442719 96442739 -56094520 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1320 42213 10 0 2 chr5 96442786 96450403 -56086856 - L1Md_A LINE L1 -1 6581 1 6 1320 1936 127 17 3 chr5 96450949 96451241 -56086018 + L1_Mus4 LINE L1 6335 6630 -6 6 1320 1811 110 0 4 chr5 96451250 96451514 -56085745 + RLTR31_Mur LTR ERVK 179 441 -112 6 1320 374 121 30 0 chr5 96451515 96451581 -56085678 + Lx2 LINE L1 6919 6986 -11 6 1320 286 169 141 33 chr5 96451763 96451855 -56085404 + L1MD3 LINE L1 7335 7436 -559 6 1320 538 223 160 34 chr5 96452307 96452576 -56084683 + L1MC3 LINE L1 7339 7641 -144 6 1320 69 24 0 0 chr5 96452576 96452659 -56084600 + AT_rich Low_complexity Low_complexity 1 83 0 6 1320 338 286 73 45 chr5 96452747 96452857 -56084402 - PB1D10 SINE Alu -3 114 2 6 1320 6334 208 48 115 chr5 96452987 96455061 -56082198 - Lx7 LINE L1 0 7696 5334 6 1320 1184 56 0 0 chr5 96455058 96455200 -56082059 + L1Md_F3 LINE L1 5443 5584 -299 6 1320 8954 34 5 0 chr5 96455202 96456195 -56081064 + L1Md_F3 LINE L1 5587 6584 0 6 1320 7099 189 62 11 chr5 96456196 96457735 -56079524 - Lx7 LINE L1 -530 5350 3733 6 1320 4720 178 45 40 chr5 96457706 96458494 -56078765 - Lx7 LINE L1 -3598 2282 1475 6 1320 230 0 33 0 chr5 96458494 96458524 -56078735 + (TTG)n Simple_repeat Simple_repeat 3 33 0 6 1320 4720 207 65 30 chr5 96458524 96459477 -56077782 - Lx7 LINE L1 -4406 1474 498 6 1320 204 225 0 0 chr5 96460701 96460741 -56076518 + CT-rich Low_complexity Low_complexity 2 41 0 6 1320 542 321 56 12 chr5 96461060 96461221 -56076038 + B3A SINE B2 1 168 -30 6 1320 24 32 0 0 chr5 96461251 96461282 -56075977 + AT_rich Low_complexity Low_complexity 1 31 0 6 1320 495 0 0 0 chr5 96461478 96461533 -56075726 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1320 21 71 0 0 chr5 96461900 96461942 -56075317 + AT_rich Low_complexity Low_complexity 1 42 0 6 1320 539 288 46 61 chr5 96462323 96462519 -56074740 - B3A SINE B2 -4 194 2 6 1320 644 134 9 23 chr5 96462553 96462777 -56074482 + (TG)n Simple_repeat Simple_repeat 1 220 0 6 1320 873 283 142 28 chr5 96462792 96463258 -56074001 - L1_Mur3 LINE L1 -1551 4329 3811 6 1320 857 244 60 11 chr5 96463261 96463526 -56073733 + BLACKJACK DNA AcHobo 1146 1423 -1521 6 1320 949 217 91 5 chr5 96464070 96464269 -56072990 - B3 SINE B2 0 216 1 6 1320 398 20 20 0 chr5 96464672 96464723 -56072536 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1320 239 378 0 0 chr5 96465088 96465170 -56072089 - MER94 DNA AcHobo -38 96 15 6 1320 444 250 29 39 chr5 96465804 96465908 -56071351 - RSINE1 SINE B4 -61 104 2 6 1320 289 295 0 0 chr5 96466464 96466542 -56070717 + ID4 SINE ID 3 80 -3 6 1320 433 129 21 0 chr5 96467445 96467538 -56069721 + (TG)n Simple_repeat Simple_repeat 2 96 0 6 1320 4553 68 7 29 chr5 96467578 96468169 -56069090 - L1Md_F2 LINE L1 0 6582 6005 6 20 510 303 0 24 chr5 96468924 96469049 -56068210 - B1F2 SINE Alu -27 122 1 6 20 328 350 47 31 chr5 96468937 96469064 -56068195 - B4 SINE B4 -94 198 70 6 1321 21 0 0 0 chr5 96469870 96469891 -56067368 + AT_rich Low_complexity Low_complexity 1 21 0 6 1321 233 77 51 0 chr5 96469933 96469972 -56067287 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 6 1321 441 81 0 0 chr5 96469973 96470035 -56067224 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1321 260 27 27 0 chr5 96470375 96470412 -56066847 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6 1321 351 405 63 24 chr5 96470487 96470740 -56066519 + LTR33A_ LTR ERVL 264 526 -5 6 1321 1761 268 133 62 chr5 96471096 96471367 -56065892 - Lx8 LINE L1 -19 7454 7172 6 1321 2653 53 81 0 chr5 96471367 96471687 -56065572 - ORR1A1 LTR MaLR 0 346 1 6 1321 1761 268 133 62 chr5 96471687 96472199 -56065060 - Lx8 LINE L1 -302 7171 6616 6 1321 327 132 0 0 chr5 96473157 96473225 -56064034 + (T)n Simple_repeat Simple_repeat 1 68 0 6 1321 37108 63 1 14 chr5 96473275 96479425 -56057834 - L1Md_F2 LINE L1 0 6582 511 6 1321 1451 290 119 24 chr5 96479479 96479933 -56057326 - Lx8 LINE L1 -42 7431 6928 6 1321 5011 79 16 114 chr5 96479933 96480766 -56056493 + RMER17A LTR ERVK 1 751 0 6 1321 1451 290 119 24 chr5 96480766 96480901 -56056358 - Lx8 LINE L1 -546 6927 6786 6 1321 840 296 58 3 chr5 96481039 96481351 -56055908 - L1MA5 LINE L1 -295 6005 5677 6 1321 2683 207 57 34 chr5 96481344 96482044 -56055215 + L1_Rod LINE L1 3776 4491 -1356 6 1321 3283 229 28 25 chr5 96482058 96482871 -56054388 + Lx9 LINE L1 6829 7644 0 6 1321 475 214 154 13 chr5 96482902 96483058 -56054201 - L1MA5 LINE L1 -621 5679 5502 6 1321 684 277 36 47 chr5 96483108 96483301 -56053958 - B4A SINE B4 -97 195 5 6 1321 258 239 79 130 chr5 96483322 96483538 -56053721 - L1MA5 LINE L1 -837 5460 5256 6 1321 274 337 34 23 chr5 96483628 96483716 -56053543 - RSINE1 SINE B4 -65 100 12 6 1321 390 331 135 0 chr5 96484317 96484495 -56052764 + LTR33A LTR ERVL 1 202 -318 6 1321 5091 151 97 1 chr5 96484506 96485407 -56051852 - Lx3C LINE L1 -2 6974 5988 6 1321 3708 30 0 128 chr5 96485443 96485943 -56051316 + RLTR10C LTR ERVK 1 436 0 6 1321 2714 90 53 3 chr5 96485943 96486323 -56050936 + MMERVK10C-int LTR ERVK 1 399 -7182 6 1321 43085 36 0 1 chr5 96486321 96491265 -56045994 + MMERVK10C-int LTR ERVK 870 5810 -1771 6 1321 7561 38 7 62 chr5 96491251 96491301 -56045958 + MMERVK10C-int LTR ERVK 6646 6692 -889 6 1321 221 0 35 0 chr5 96491301 96491330 -56045929 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1321 7561 38 7 62 chr5 96491330 96492269 -56044990 + MMERVK10C-int LTR ERVK 6693 7581 0 6 1321 3645 39 0 128 chr5 96492269 96492769 -56044490 + RLTR10C LTR ERVK 1 436 0 6 1321 4971 121 113 10 chr5 96492769 96493659 -56043600 - L1_Mur1 LINE L1 -1925 3961 2980 6 1321 3457 172 31 13 chr5 96493654 96494745 -56042514 - L1_Mur1 LINE L1 -2032 1882 767 6 1321 275 182 0 0 chr5 96494859 96494903 -56042356 - L1_Mur1 LINE L1 -6230 754 711 6 1321 661 201 221 32 chr5 96495242 96495545 -56041714 + ORR1B1 LTR MaLR 1 372 -6 6 1321 264 59 0 0 chr5 96495579 96495613 -56041646 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1321 336 339 70 100 chr5 96496565 96496765 -56040494 + LTR16E2 LTR ERVL 351 544 -24 6 1321 289 277 108 0 chr5 96498133 96498198 -56039061 + B4A SINE B4 4 75 -217 6 1321 227 331 100 44 chr5 96501197 96501377 -56035882 - RLTR13A2 LTR ERVK -678 280 91 1 1321 243 136 29 43 chr5 96505457 96505526 -56031733 + A-rich Low_complexity Low_complexity 5 72 0 2 1321 327 275 88 0 chr5 96507055 96507146 -56030113 - PB1D10 SINE Alu -15 102 4 3 1321 24 0 0 0 chr5 96507385 96507409 -56029850 + AT_rich Low_complexity Low_complexity 1 24 0 4 1321 246 222 111 0 chr5 96507567 96507630 -56029629 + MER63B DNA AcHobo 365 434 -2 5 1321 693 187 29 7 chr5 96507807 96507947 -56029312 + B1_Mur4 SINE Alu 2 144 -6 6 1321 351 169 65 0 chr5 96508720 96508797 -56028462 - B3 SINE B2 -3 213 132 7 1321 693 223 0 33 chr5 96509265 96509418 -56027841 + B1_Mur1 SINE Alu 1 148 -1 8 1321 30 45 0 0 chr5 96509688 96509732 -56027527 + AT_rich Low_complexity Low_complexity 1 44 0 9 1321 782 187 137 51 chr5 96509808 96510005 -56027254 - B3 SINE B2 -1 215 2 1 1321 742 276 30 67 chr5 96510548 96510847 -56026412 + B4 SINE B4 2 289 -3 1 1321 210 289 22 0 chr5 96511025 96511070 -56026189 + ID SINE ID 28 73 -151 1 1321 601 357 71 35 chr5 96511354 96511665 -56025594 + LTR33 LTR ERVL 40 361 -154 1 1321 201 108 0 0 chr5 96512591 96512628 -56024631 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 1 1321 602 260 41 95 chr5 96512630 96512851 -56024408 - B3 SINE B2 -4 212 4 1 1321 21 0 0 0 chr5 96513067 96513088 -56024171 + AT_rich Low_complexity Low_complexity 1 21 0 1 1321 756 240 9 67 chr5 96513097 96513256 -56024003 + B3A SINE B2 1 153 -45 1 1321 192 40 0 0 chr5 96513256 96513281 -56023978 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1321 756 240 9 67 chr5 96513281 96513331 -56023928 + B3A SINE B2 154 198 0 1 1321 216 0 0 0 chr5 96514404 96514428 -56022831 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1321 186 303 91 13 chr5 96515628 96515705 -56021554 - L4 LINE RTE -1263 766 684 2 1321 21 36 0 0 chr5 96515924 96515952 -56021307 + AT_rich Low_complexity Low_complexity 1 28 0 2 1321 919 206 141 33 chr5 96516051 96516392 -56020867 + MTD LTR MaLR 1 419 0 2 1321 495 0 0 0 chr5 96517008 96517063 -56020196 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1321 705 244 67 6 chr5 96517126 96517291 -56019968 + B3A SINE B2 24 198 0 2 1321 692 237 38 0 chr5 96517290 96517421 -56019838 + B1_Mur1 SINE Alu 1 136 -13 2 1321 180 0 0 0 chr5 96517422 96517442 -56019817 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2 1321 221 192 39 0 chr5 96518252 96518304 -56018955 + CT-rich Low_complexity Low_complexity 3 56 0 2 1321 204 355 39 13 chr5 96518874 96518951 -56018308 - MIR SINE MIR -127 135 57 2 1321 317 208 28 0 chr5 96519006 96519078 -56018181 + Lx9 LINE L1 7291 7364 -280 2 1321 24 85 0 0 chr5 96519449 96519508 -56017751 + AT_rich Low_complexity Low_complexity 1 59 0 3 1321 5349 93 46 5 chr5 96519753 96520534 -56016725 + Lx2 LINE L1 6184 6996 -1 3 1321 227 392 0 19 chr5 96520925 96521029 -56016230 - MIR SINE MIR -87 121 20 3 1321 1201 81 151 5 chr5 96521214 96521400 -56015859 + L1_Mus1 LINE L1 6355 6567 0 3 1321 265 277 0 0 chr5 96522046 96522111 -56015148 - B1F1 SINE Alu 0 149 85 3 1321 292 264 89 18 chr5 96522206 96522318 -56014941 + L1MA7 LINE L1 6156 6275 -16 3 1321 216 0 0 0 chr5 96522373 96522397 -56014862 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1321 218 279 0 0 chr5 96526102 96526136 -56011123 + A-rich Low_complexity Low_complexity 2 35 0 3 1321 671 214 57 0 chr5 96526136 96526276 -56010983 + B1_Mur2 SINE Alu 2 149 0 3 1321 218 279 0 0 chr5 96526276 96526302 -56010957 + A-rich Low_complexity Low_complexity 36 61 0 3 1321 26 74 0 0 chr5 96526429 96526483 -56010776 + AT_rich Low_complexity Low_complexity 1 54 0 4 1321 613 229 153 0 chr5 96526533 96526716 -56010543 - B3 SINE B2 -5 211 1 4 1321 1726 67 25 8 chr5 96527845 96528085 -56009174 + L1Md_F3 LINE L1 6327 6570 -14 4 1321 544 196 12 134 chr5 96528341 96528512 -56008747 - B1_Mur4 SINE Alu 0 150 1 4 1321 828 183 0 21 chr5 96528963 96529108 -56008151 + B1_Mur4 SINE Alu 3 144 -6 4 1321 748 293 155 98 chr5 96529108 96529770 -56007489 + L1MDa LINE L1 1469 2169 -4464 4 1321 651 277 7 0 chr5 96530078 96530226 -56007033 + B3 SINE B2 68 216 0 4 1321 1107 88 0 0 chr5 96530231 96530378 -56006881 + B1_Mus2 SINE Alu 1 147 0 4 1321 294 195 0 0 chr5 96530387 96530469 -56006790 + A-rich Low_complexity Low_complexity 1 82 0 4 1321 546 69 0 0 chr5 96530493 96530565 -56006694 + B1_Mur4 SINE Alu 79 150 0 4 1321 332 295 132 0 chr5 96530860 96531026 -56006233 + L1MDa LINE L1 3017 3204 -3333 4 1321 337 309 12 12 chr5 96531069 96531151 -56006108 - B3 SINE B2 -134 82 1 5 1321 490 276 81 0 chr5 96531320 96531443 -56005816 - Lx7 LINE L1 -668 7028 6896 5 1321 1727 112 16 59 chr5 96531515 96531820 -56005439 - Lx LINE L1 -5 6649 6358 5 1321 6937 119 80 4 chr5 96531820 96533038 -56004221 + Lx2 LINE L1 5455 6750 -247 5 1321 22 0 0 0 chr5 96533038 96533060 -56004199 + AT_rich Low_complexity Low_complexity 1 22 0 5 1321 595 277 77 22 chr5 96533219 96533400 -56003859 - ID_B1 SINE B4 -24 200 10 5 1321 478 243 44 59 chr5 96533511 96533647 -56003612 + B1_Mur1 SINE Alu 16 147 -2 5 1321 437 286 136 81 chr5 96533689 96533910 -56003349 + B4A SINE B4 1 233 -59 5 1321 813 221 101 4 chr5 96534262 96534489 -56002770 - Tigger5 DNA MER2_type -8 2398 2150 5 1321 755 291 42 0 chr5 96534653 96534818 -56002441 + B3A SINE B2 1 172 -26 5 1321 452 222 83 33 chr5 96534834 96534955 -56002304 + B1_Mur2 SINE Alu 23 149 0 6 1321 223 104 0 40 chr5 96534955 96535005 -56002254 + (TAG)n Simple_repeat Simple_repeat 3 50 0 6 1321 372 286 66 9 chr5 96535718 96535824 -56001435 + RSINE1 SINE B4 11 122 -43 6 1321 532 72 0 0 chr5 96536090 96536159 -56001100 - B1_Mur4 SINE Alu -6 144 76 6 1321 359 355 57 17 chr5 96536299 96536474 -56000785 + L1MEd LINE L1 933 1114 -5005 6 1321 326 335 90 21 chr5 96536756 96536945 -56000314 + L1MCb LINE L1 648 849 -5196 6 1321 7170 170 49 32 chr5 96537091 96538507 -55998752 + Lx5 LINE L1 5611 7050 0 6 1321 378 115 0 0 chr5 96538594 96538655 -55998604 + (GGGA)n Simple_repeat Simple_repeat 1 61 0 6 1321 2688 161 98 6 chr5 96539169 96539669 -55997590 - Lx4A LINE L1 -3 7055 6510 6 1321 586 293 161 40 chr5 96539817 96540190 -55997069 + RMER5 LTR ERV1 25 442 -92 6 1321 645 244 221 32 chr5 96541047 96541517 -55995742 + L1M4 LINE L1 524 1082 -5460 7 1321 192 40 0 0 chr5 96541519 96541544 -55995715 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1321 525 333 127 9 chr5 96541636 96541848 -55995411 + Tigger5 DNA MER2_type 4 240 -2166 7 1321 240 317 0 0 chr5 96541869 96541929 -55995330 + Tigger5 DNA MER2_type 2347 2406 0 7 1321 240 316 42 0 chr5 96541974 96542069 -55995190 + PB1D10 SINE Alu 18 116 -1 7 1321 325 271 153 4 chr5 96542297 96542536 -55994723 + L1M4 LINE L1 1472 1751 -4895 7 1321 765 61 0 0 chr5 96543612 96543711 -55993548 + (GAAA)n Simple_repeat Simple_repeat 1 99 0 7 1321 423 0 0 0 chr5 96543711 96543758 -55993501 + (GAGAA)n Simple_repeat Simple_repeat 1 47 0 7 1321 521 291 87 75 chr5 96544135 96544833 -55992426 + Lx8 LINE L1 1465 2158 -3689 7 1321 2028 268 78 34 chr5 96544832 96545667 -55991592 + Lx8 LINE L1 4966 5837 -10 7 1321 2519 256 184 19 chr5 96545865 96546754 -55990505 + Lx8 LINE L1 6109 7144 -329 7 1321 289 259 95 70 chr5 96546763 96546921 -55990338 + Lx8 LINE L1 7308 7469 -4 7 1321 372 273 91 71 chr5 96546929 96547078 -55990181 + L1M4 LINE L1 2763 2923 -3718 7 1321 1264 20 0 0 chr5 96547078 96547224 -55990035 + B1_Mm SINE Alu 2 147 0 7 1321 895 261 301 17 chr5 96547224 96547788 -55989471 + L1M4 LINE L1 2924 3639 -3002 7 1321 391 226 40 81 chr5 96547858 96548031 -55989228 + L1M4 LINE L1 3753 3918 -2723 7 1321 343 248 245 12 chr5 96548049 96548306 -55988953 + L1M4 LINE L1 5440 5756 -885 7 1321 256 243 27 13 chr5 96548307 96548382 -55988877 + PB1 SINE Alu 50 125 -2 7 1321 38154 12 0 7 chr5 96548610 96554008 -55983251 + L1Md_A LINE L1 232 5586 -297 7 1321 8896 9 0 0 chr5 96554008 96555039 -55982220 + L1Md_A LINE L1 5587 6582 0 7 1321 576 266 34 34 chr5 96555204 96555383 -55981876 + B3A SINE B2 4 182 -16 8 1321 652 210 0 65 chr5 96555627 96555780 -55981479 - B1_Mur1 SINE Alu -3 146 4 8 1321 408 250 21 0 chr5 96556142 96556238 -55981021 - B1_Mur2 SINE Alu -47 102 5 8 1321 212 279 23 0 chr5 96556640 96556683 -55980576 + B1_Mus1 SINE Alu 1 44 -104 8 1321 225 214 36 0 chr5 96557000 96557056 -55980203 - L1M5 LINE L1 -3913 2233 2176 8 1321 392 267 59 0 chr5 96557134 96557235 -55980024 - BC1_Mm scRNA scRNA -44 108 2 8 1321 218 263 0 0 chr5 96557760 96557798 -55979461 + B1F SINE Alu 1 38 -111 8 1321 180 0 0 0 chr5 96557930 96557950 -55979309 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1321 788 212 7 14 chr5 96558367 96558515 -55978744 - B1_Mur4 SINE Alu -2 148 2 8 1321 570 282 14 34 chr5 96558705 96558852 -55978407 + RSINE1 SINE B4 22 165 0 8 1321 2569 67 20 0 chr5 96559013 96559358 -55977901 + L1_Mus3 LINE L1 6287 6638 0 9 1321 245 109 22 0 chr5 96560469 96560515 -55976744 + (AGGGGG)n Simple_repeat Simple_repeat 4 50 0 9 1321 23 33 0 0 chr5 96560711 96560741 -55976518 + AT_rich Low_complexity Low_complexity 1 30 0 9 1321 244 309 156 50 chr5 96560905 96561037 -55976222 + MIRc SINE MIR 26 183 -85 9 1321 847 251 5 29 chr5 96561037 96561246 -55976013 - ID_B1 SINE B4 -18 206 3 9 1321 226 309 156 50 chr5 96561246 96561273 -55975986 + MIRb SINE MIR 184 205 -63 9 1321 667 289 36 6 chr5 96561330 96561539 -55975720 - B3A SINE B2 -6 210 1 9 1321 22 70 0 0 chr5 96561545 96561588 -55975671 + AT_rich Low_complexity Low_complexity 1 43 0 9 1321 605 290 102 9 chr5 96562253 96562597 -55974662 - L1MD3 LINE L1 -47 7948 7573 9 1321 273 316 60 77 chr5 96563185 96563353 -55973906 + RSINE1 SINE B4 1 165 0 9 1321 23 33 0 0 chr5 96563373 96563403 -55973856 + AT_rich Low_complexity Low_complexity 1 30 0 9 1321 34 42 0 0 chr5 96563468 96563516 -55973743 + AT_rich Low_complexity Low_complexity 1 48 0 1 1321 289 348 68 0 chr5 96564507 96564625 -55972634 + MER94 DNA AcHobo 4 129 -5 1 1321 227 278 65 65 chr5 96565854 96565977 -55971282 - PB1 SINE Alu -4 123 1 1 1321 194 222 19 0 chr5 96566508 96566562 -55970697 + G-rich Low_complexity Low_complexity 3 57 0 1 1321 432 231 33 0 chr5 96566978 96567069 -55970190 + PB1D10 SINE Alu 23 116 -1 1 1321 22 35 0 0 chr5 96567278 96567307 -55969952 + AT_rich Low_complexity Low_complexity 1 29 0 1 1321 725 142 0 0 chr5 96567392 96567498 -55969761 + B2_Mm2 SINE B2 2 107 -88 1 1321 339 25 0 0 chr5 96567572 96567612 -55969647 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1 1321 354 281 48 19 chr5 96567838 96567943 -55969316 + B1_Mus2 SINE Alu 19 126 -21 1 1321 204 125 0 0 chr5 96568691 96568723 -55968536 + (GAA)n Simple_repeat Simple_repeat 2 33 0 1 1321 522 208 10 40 chr5 96568723 96568823 -55968436 + RSINE1 SINE B4 11 107 -58 1 1321 250 315 134 20 chr5 96568823 96568872 -55968387 + B2_Mm1a SINE B2 10 175 -18 1 1321 313 296 84 73 chr5 96569363 96569701 -55967558 + MTEb LTR MaLR 15 379 0 1 1321 2232 181 88 23 chr5 96569848 96570181 -55967078 + RLTR12B LTR ERVK 23 387 -141 1 1321 1282 40 34 6 chr5 96570181 96570357 -55966902 + L1_Mus3 LINE L1 6452 6632 -6 1 1321 2232 181 88 23 chr5 96570357 96570498 -55966761 + RLTR12B LTR ERVK 388 528 0 1 1321 286 246 140 10 chr5 96570689 96570882 -55966377 + L1MD LINE L1 4826 5043 -1103 1 1321 714 185 17 0 chr5 96570884 96571003 -55966256 + B3 SINE B2 1 121 -95 1 1321 437 234 11 24 chr5 96571671 96571789 -55965470 + B1_Mur4 SINE Alu 13 149 -1 1 1321 251 54 27 0 chr5 96572651 96572688 -55964571 + (TTTTTG)n Simple_repeat Simple_repeat 6 43 0 1 1321 1082 61 0 86 chr5 96572688 96572850 -55964409 - B1_Mus1 SINE Alu 0 148 1 1 1321 990 192 210 8 chr5 96573058 96573321 -55963938 + Lx9 LINE L1 6403 6718 -926 1 1321 2822 199 85 20 chr5 96573320 96574087 -55963172 + Lx9 LINE L1 6827 7643 -1 1 1321 25 75 0 0 chr5 96574175 96574228 -55963031 + AT_rich Low_complexity Low_complexity 1 53 0 1 1321 586 273 60 60 chr5 96574736 96574836 -55962423 - U2 snRNA snRNA -1 187 88 1 1321 189 0 0 0 chr5 96574836 96574857 -55962402 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1321 586 273 60 60 chr5 96574857 96574939 -55962320 - U2 snRNA snRNA -101 87 5 1 1321 360 258 60 136 chr5 96575133 96575317 -55961942 + MT2B LTR ERVL 96 265 -336 1 1321 760 227 14 14 chr5 96575209 96575352 -55961907 + B1_Mur2 SINE Alu 6 148 -1 1 1321 213 39 0 0 chr5 96575458 96575484 -55961775 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1321 276 263 0 79 chr5 96575744 96575834 -55961425 - BC1_Mm scRNA scRNA 0 83 1 1 1321 261 262 88 0 chr5 96575864 96575944 -55961315 + L1MC LINE L1 5563 5649 -2233 1 1321 717 203 22 44 chr5 96575961 96576141 -55961118 + B2_Mm2 SINE B2 2 177 -18 1 1321 332 234 52 0 chr5 96576169 96576246 -55961013 + B4A SINE B4 1 81 -211 1 1321 313 170 0 0 chr5 96576313 96576366 -55960893 + RLTR31_Mur LTR ERVK 501 553 0 1 1321 318 195 91 25 chr5 96576594 96576715 -55960544 + L1M4 LINE L1 5601 5729 -455 1 1321 513 279 57 84 chr5 96576768 96576995 -55960264 + ID_B1 SINE B4 2 222 -2 1 1321 2862 143 77 38 chr5 96577072 96577594 -55959665 + RLTR31_Mur LTR ERVK 12 553 0 1 1321 1217 48 0 0 chr5 96577663 96577810 -55959449 + B1_Mus2 SINE Alu 1 147 0 1 1321 576 170 0 0 chr5 96577831 96577925 -55959334 + PB1D9 SINE Alu 27 120 0 1 1321 290 325 41 33 chr5 96577925 96577952 -55959307 + B4 SINE B4 112 233 -59 1 1321 588 252 184 16 chr5 96578473 96578783 -55958476 + Charlie4a DNA MER1_type 1 362 -146 1 1321 428 269 0 42 chr5 96578815 96578935 -55958324 - PB1D10 SINE Alu 0 117 3 1 1321 201 74 0 0 chr5 96579209 96579236 -55958023 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1321 530 272 14 35 chr5 96579236 96579377 -55957882 - B1_Mus1 SINE Alu -2 146 9 1 1321 4280 155 124 11 chr5 96579385 96580194 -55957065 + RMER19B LTR ERVK 3 902 0 1 1321 219 69 0 0 chr5 96580654 96580683 -55956576 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1321 883 333 70 15 chr5 96580683 96581158 -55956101 - Lx8 LINE L1 -146 7327 6827 1 1321 249 268 36 0 chr5 96581264 96581320 -55955939 + ID4_ SINE ID 26 83 0 1 1321 185 318 0 0 chr5 96581339 96581402 -55955857 + L2 LINE L2 2825 2887 -532 1 1321 383 367 34 146 chr5 96581740 96582062 -55955197 - L2c LINE L2 0 3375 3090 1 1321 372 290 108 40 chr5 96582513 96582719 -55954540 - MIR SINE MIR 0 262 56 1 1321 185 317 23 47 chr5 96582708 96582794 -55954465 + MIRb SINE MIR 132 215 -53 1 1321 1075 152 44 28 chr5 96583007 96583207 -55954052 + ORR1D1 LTR MaLR 1 200 -178 1 1321 189 74 0 0 chr5 96583207 96583234 -55954025 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 1 1321 895 221 102 84 chr5 96583234 96583404 -55953855 + ORR1D1 LTR MaLR 201 378 0 1 1321 227 309 85 12 chr5 96583477 96583559 -55953700 + MTEb LTR MaLR 1 88 -271 1 1321 311 319 104 30 chr5 96583634 96583889 -55953370 + MTEb LTR MaLR 79 374 -5 1 1321 320 216 29 49 chr5 96584232 96584334 -55952925 + GA-rich Low_complexity Low_complexity 5 104 0 1 1321 867 88 291 0 chr5 96585653 96585801 -55951458 + B2_Mm2 SINE B2 3 193 -2 1 1321 1679 78 57 19 chr5 96585809 96586071 -55951188 + Lx LINE L1 6371 6642 -12 1 1321 276 30 0 0 chr5 96586071 96586104 -55951155 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1 1321 530 153 44 41 chr5 96586114 96586241 -55951018 + B1_Mur4 SINE Alu 29 149 -1 1 1321 212 0 36 0 chr5 96586318 96586346 -55950913 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1321 247 134 0 74 chr5 96586378 96586450 -55950809 - B1F2 SINE Alu -83 67 7 1 1321 745 253 87 83 chr5 96586453 96586878 -55950381 + Lx7 LINE L1 5443 5904 -1792 1 1321 207 0 0 0 chr5 96587170 96587193 -55950066 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1321 1049 116 26 0 chr5 96587193 96587348 -55949911 + MMERVK10C-int LTR ERVK 6850 7008 -573 1 1321 1188 127 11 6 chr5 96587400 96587582 -55949677 - B2_Mm1t SINE B2 -8 185 3 1 1321 706 267 48 11 chr5 96587746 96587935 -55949324 - B3A SINE B2 -2 196 1 1 1321 291 295 104 9 chr5 96588056 96588162 -55949097 + PB1D10 SINE Alu 1 116 -1 1 1321 27 0 0 0 chr5 96588245 96588272 -55948987 + AT_rich Low_complexity Low_complexity 1 27 0 1 1321 22 35 0 0 chr5 96590154 96590183 -55947076 + GC_rich Low_complexity Low_complexity 1 29 0 1 1321 28 86 0 0 chr5 96590263 96590333 -55946926 + GC_rich Low_complexity Low_complexity 1 70 0 1 1321 22 41 0 39 chr5 96590494 96590517 -55946742 + GC_rich Low_complexity Low_complexity 1 23 0 1 1321 263 104 0 20 chr5 96590517 96590566 -55946693 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1321 22 41 0 39 chr5 96590566 96590593 -55946666 + GC_rich Low_complexity Low_complexity 1 26 0 1 1321 27 29 0 0 chr5 96590873 96590907 -55946352 + GC_rich Low_complexity Low_complexity 1 34 0 1 1321 407 112 12 0 chr5 96590981 96591061 -55946198 + (CGG)n Simple_repeat Simple_repeat 1 81 0 1 1321 30 0 0 0 chr5 96591123 96591153 -55946106 + GC_rich Low_complexity Low_complexity 1 30 0 1 1321 25 83 0 0 chr5 96591208 96591268 -55945991 + GC_rich Low_complexity Low_complexity 1 60 0 1 1321 230 81 27 0 chr5 96591409 96591446 -55945813 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1321 26 0 0 0 chr5 96591646 96591672 -55945587 + GC_rich Low_complexity Low_complexity 1 26 0 1 1321 252 0 0 0 chr5 96592598 96592626 -55944633 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1321 186 43 0 0 chr5 96592707 96592730 -55944529 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1321 563 206 121 71 chr5 96593577 96593718 -55943541 + B3 SINE B2 5 152 -64 1 1321 239 217 95 12 chr5 96593753 96593837 -55943422 + L1MA6 LINE L1 6188 6278 -22 1 1321 580 222 94 58 chr5 96593883 96594074 -55943185 + B3A SINE B2 1 198 0 1 1321 280 286 28 14 chr5 96594150 96594221 -55943038 + ID4 SINE ID 8 79 -4 1 1321 882 240 38 27 chr5 96594263 96594494 -55942765 + B4 SINE B4 12 247 -45 1 1321 262 233 0 141 chr5 96594864 96594949 -55942310 - B4A SINE B4 -6 286 214 1 1321 291 93 0 0 chr5 96594989 96595032 -55942227 + (TTGG)n Simple_repeat Simple_repeat 4 46 0 1 1321 540 260 0 103 chr5 96595039 96595154 -55942105 - B4 SINE B4 -95 197 87 1 1321 406 169 0 53 chr5 96595154 96595248 -55942011 - Lx6 LINE L1 -5 7455 7367 1 1321 540 260 0 103 chr5 96595248 96595278 -55941981 - B4 SINE B4 -206 86 67 1 1321 810 264 46 42 chr5 96595281 96595498 -55941761 - ID_B1 SINE B4 -5 219 2 1 1321 422 277 72 14 chr5 96595520 96595659 -55941600 - B1F SINE Alu -2 147 1 1 1321 1347 184 130 22 chr5 96595828 96596151 -55941108 - ORR1E LTR MaLR 0 359 2 1 1321 471 215 112 0 chr5 96596562 96596669 -55940590 + PB1D9 SINE Alu 1 119 -1 1 1321 2328 121 11 6 chr5 96596902 96597259 -55940000 + RLTR15 LTR ERVK 1 359 0 1 1321 588 207 50 36 chr5 96597668 96597808 -55939451 - B1F1 SINE Alu -6 143 2 1 1321 193 316 38 12 chr5 96597934 96598014 -55939245 - L3 LINE CR1 -2699 1790 1709 1 1321 1231 96 56 0 chr5 96598434 96598612 -55938647 - B2_Mm2 SINE B2 -7 188 1 1 1321 357 62 0 0 chr5 96599137 96599185 -55938074 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1 1321 204 241 73 18 chr5 96599424 96599479 -55937780 + MIRc SINE MIR 68 125 -143 1 1322 296 259 56 11 chr5 96600235 96600325 -55936934 + ID_B1 SINE B4 3 96 -128 1 1322 1438 78 0 10 chr5 96600579 96600774 -55936485 - B2_Mm2 SINE B2 -2 193 1 1 1322 369 0 0 0 chr5 96601436 96601477 -55935782 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1322 901 271 132 35 chr5 96601547 96601888 -55935371 + MTEa LTR MaLR 1 374 -5 2 1322 202 128 26 0 chr5 96601993 96602032 -55935227 + T-rich Low_complexity Low_complexity 4 43 0 2 1322 383 117 18 161 chr5 96602079 96602191 -55935068 - Lx7 LINE L1 -1 7695 7600 2 1322 413 316 71 51 chr5 96602216 96602566 -55934693 + ORR1E LTR MaLR 1 357 -2 2 1322 387 0 0 0 chr5 96602730 96602773 -55934486 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1322 1157 299 84 39 chr5 96603928 96604461 -55932798 - MER20B DNA MER1_type -3 780 224 2 1322 259 296 0 0 chr5 96604479 96604560 -55932699 - ID2 SINE ID 0 83 3 2 1322 225 0 0 0 chr5 96605047 96605072 -55932187 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1322 189 377 14 14 chr5 96605146 96605216 -55932043 - MIR SINE MIR -191 71 2 2 1322 236 371 75 8 chr5 96605876 96606009 -55931250 + ORR1E LTR MaLR 4 145 -214 2 1322 229 303 0 43 chr5 96606025 96606094 -55931165 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 2 1322 280 340 129 19 chr5 96606730 96606855 -55930404 + MLT1A LTR MaLR 65 198 -176 2 1322 372 94 0 0 chr5 96606855 96606908 -55930351 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1322 280 260 110 65 chr5 96606908 96607063 -55930196 + MLT1A LTR MaLR 199 407 -1 2 1322 756 113 0 0 chr5 96607269 96607375 -55929884 + B2_Mm2 SINE B2 2 107 -88 2 1322 3477 174 35 14 chr5 96607781 96608513 -55928746 + RMER1A Other Other 35 867 -163 2 1322 288 0 0 0 chr5 96608513 96608545 -55928714 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1322 3202 201 44 6 chr5 96608545 96608660 -55928599 + RMER1B Other Other 946 1059 -7 2 1322 1425 74 16 0 chr5 96608786 96608975 -55928284 - B2_Mm2 SINE B2 -3 192 1 2 1322 338 256 128 0 chr5 96609130 96609216 -55928043 - B1F SINE Alu -46 103 7 2 1322 16995 26 0 0 chr5 96609324 96612070 -55925189 - L1Md_T LINE L1 0 6582 3837 2 1322 386 213 83 69 chr5 96612089 96612191 -55925068 - PB1 SINE Alu -89 222 22 2 1322 925 234 159 30 chr5 96612198 96612532 -55924727 - MTE2b LTR MaLR 0 379 3 2 1322 254 286 11 82 chr5 96612533 96612716 -55924543 + (CACCC)n Simple_repeat Simple_repeat 5 174 0 2 1322 208 319 0 50 chr5 96613182 96613281 -55923978 - L2c LINE L2 -41 3346 3253 2 1322 295 13 0 162 chr5 96613284 96613469 -55923790 + (CACAG)n Simple_repeat Simple_repeat 1 155 0 2 1322 306 151 0 40 chr5 96613858 96613934 -55923325 + CT-rich Low_complexity Low_complexity 6 78 0 2 1322 275 323 0 0 chr5 96613963 96614028 -55923231 - tRNA-Ala-GCG tRNA tRNA -9 66 2 2 1322 473 302 0 0 chr5 96614736 96614842 -55922417 + B1F1 SINE Alu 1 106 -43 2 1322 411 21 0 0 chr5 96615226 96615274 -55921985 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1322 238 254 0 0 chr5 96615274 96615329 -55921930 - ID4_ SINE ID -21 62 8 2 1322 334 150 16 16 chr5 96615389 96615450 -55921809 - B1F1 SINE Alu -88 61 1 2 1322 342 98 0 0 chr5 96615546 96615597 -55921662 + (TCCC)n Simple_repeat Simple_repeat 1 51 0 2 1322 411 248 28 0 chr5 96615989 96616098 -55921161 - PB1D10 SINE Alu -2 115 4 2 1322 629 333 34 47 chr5 96616217 96616450 -55920809 - B4A SINE B4 0 292 63 2 1322 703 274 26 0 chr5 96616596 96616749 -55920510 + B3A SINE B2 1 157 -41 2 1322 249 226 214 10 chr5 96617408 96617511 -55919748 + RLTR15 LTR ERVK 2 125 -234 2 1322 304 202 128 23 chr5 96617509 96617595 -55919664 - RLTR15 LTR ERVK -262 97 3 2 1322 350 253 0 24 chr5 96618646 96618731 -55918528 + ID4 SINE ID 1 83 0 2 1322 191 296 0 18 chr5 96618858 96618913 -55918346 + L2a LINE L2 3373 3426 0 2 1322 2552 137 24 22 chr5 96619026 96619438 -55917821 - MTC LTR MaLR -8 413 1 2 1322 21 0 0 0 chr5 96619454 96619475 -55917784 + AT_rich Low_complexity Low_complexity 1 21 0 2 1322 406 182 10 93 chr5 96619967 96620064 -55917195 + B1F2 SINE Alu 35 123 -26 2 1322 241 240 36 127 chr5 96620064 96620077 -55917182 + ID_B1 SINE B4 116 215 -9 2 1322 189 175 0 0 chr5 96620245 96620285 -55916974 + GA-rich Low_complexity Low_complexity 1 40 0 2 1322 737 247 92 21 chr5 96621240 96621481 -55915778 + B4 SINE B4 5 259 -33 2 1322 676 240 31 0 chr5 96621852 96621981 -55915278 + B1_Mur2 SINE Alu 1 133 -16 2 1322 433 260 83 0 chr5 96622165 96622261 -55914998 + RSINE1 SINE B4 37 140 -25 2 1322 342 224 46 114 chr5 96622377 96622508 -55914751 + MT2B LTR ERVL 155 276 -325 2 1322 679 120 84 17 chr5 96622405 96622524 -55914735 + B1_Mus2 SINE Alu 9 135 -12 2 1322 297 238 57 38 chr5 96622620 96622725 -55914534 - L1MC LINE L1 -1140 5006 4900 2 1322 406 340 55 7 chr5 96623085 96623230 -55914029 + MIR SINE MIR 101 252 -10 2 1322 24 0 0 0 chr5 96623472 96623496 -55913763 + AT_rich Low_complexity Low_complexity 1 24 0 2 1322 3444 82 32 22 chr5 96623899 96624395 -55912864 + L1Md_F2 LINE L1 6082 6582 0 2 1322 387 60 0 0 chr5 96624417 96624467 -55912792 + (GGA)n Simple_repeat Simple_repeat 3 52 0 2 1322 271 353 51 17 chr5 96626770 96626946 -55910313 - LTR33A_ LTR ERVL -322 209 28 2 1322 566 221 84 0 chr5 96627364 96627495 -55909764 + B1F SINE Alu 1 142 -7 2 1322 233 94 0 0 chr5 96628013 96628045 -55909214 - B1_Mus2 SINE Alu -109 38 7 2 1322 1411 242 48 40 chr5 96629019 96629393 -55907866 + MTEa LTR MaLR 1 377 -2 2 1322 294 229 56 14 chr5 96629470 96629541 -55907718 - MTEa LTR MaLR -17 362 289 2 1322 1125 215 42 0 chr5 96630037 96630274 -55906985 - MTD LTR MaLR -1 418 172 2 1322 413 234 9 26 chr5 96630281 96630395 -55906864 + PB1D10 SINE Alu 4 115 -2 2 1322 293 299 95 0 chr5 96631039 96631176 -55906083 + MIRb SINE MIR 5 154 -114 2 1322 603 270 119 10 chr5 96631263 96631465 -55905794 + MIR SINE MIR 35 258 -4 2 1322 278 236 264 22 chr5 96631518 96631696 -55905563 + MER33 DNA MER1_type 43 263 -61 2 1322 440 264 12 134 chr5 96631708 96631730 -55905529 - RSINE1 SINE B4 0 165 145 2 1322 207 0 0 0 chr5 96631730 96631753 -55905506 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1322 440 264 12 134 chr5 96631753 96631901 -55905358 - RSINE1 SINE B4 -21 144 16 2 1322 291 236 21 43 chr5 96631895 96631988 -55905271 + MER33 DNA MER1_type 233 323 -1 2 1322 1331 100 16 0 chr5 96631989 96632179 -55905080 - B2_Mm2 SINE B2 -1 194 2 2 1322 1877 14 0 5 chr5 96632691 96632911 -55904348 + L1Md_A LINE L1 6364 6582 0 2 1322 313 75 19 19 chr5 96633146 96633200 -55904059 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1322 881 176 6 0 chr5 96633198 96633374 -55903885 + CT-rich Low_complexity Low_complexity 3 179 0 2 1322 383 286 32 32 chr5 96633428 96633551 -55903708 - B1F SINE Alu -25 124 2 2 1322 363 367 82 44 chr5 96634104 96634446 -55902813 - MLT1A1 LTR MaLR -21 387 33 2 1322 448 234 100 11 chr5 96634659 96634786 -55902473 + B1F SINE Alu 11 148 -1 2 1322 393 312 46 15 chr5 96635139 96635269 -55901990 + MER63B DNA AcHobo 303 436 0 2 1322 540 309 7 13 chr5 96635704 96635858 -55901401 + MER5A DNA MER1_type 15 167 -22 2 1322 339 289 84 23 chr5 96636366 96636497 -55900762 - MIR SINE MIR -109 153 15 2 1322 1011 273 56 85 chr5 96636552 96636928 -55900331 - MTEa LTR MaLR -1 378 14 2 1322 185 219 0 0 chr5 96637341 96637373 -55899886 + L2b LINE L2 3320 3351 -24 2 1322 276 280 69 14 chr5 96637707 96637821 -55899438 - L2c LINE L2 -16 3359 3242 2 1322 237 212 67 45 chr5 96637825 96637914 -55899345 + L1MB8 LINE L1 6071 6161 -17 2 1322 213 94 0 0 chr5 96638137 96638169 -55899090 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 2 1322 204 159 23 0 chr5 96638434 96638478 -55898781 + A-rich Low_complexity Low_complexity 3 47 0 2 1322 284 290 70 70 chr5 96639897 96640012 -55897247 - B4A SINE B4 -145 147 33 2 1322 570 264 111 33 chr5 96640700 96640970 -55896289 - B4A SINE B4 -1 291 1 2 1322 1509 37 0 21 chr5 96641042 96641235 -55896024 - L1_Mus1 LINE L1 0 6567 6379 2 1322 767 199 20 20 chr5 96641535 96641684 -55895575 - B1_Mur3 SINE Alu 0 149 1 2 1322 418 142 246 42 chr5 96642022 96642140 -55895119 + B1F SINE Alu 6 147 -2 2 1322 297 270 13 13 chr5 96642241 96642316 -55894943 - ID4_ SINE ID 0 83 9 2 1322 738 246 72 56 chr5 96642384 96642634 -55894625 - B4 SINE B4 -4 288 35 2 1322 25 0 0 0 chr5 96642640 96642665 -55894594 + AT_rich Low_complexity Low_complexity 1 25 0 2 1322 198 0 0 0 chr5 96642902 96642924 -55894335 + (CTG)n Simple_repeat Simple_repeat 2 23 0 2 1322 703 250 105 83 chr5 96643161 96643523 -55893736 - MTE2a LTR MaLR -7 372 3 2 1322 222 324 44 82 chr5 96644098 96644256 -55893003 - MIRb SINE MIR 0 268 117 2 1322 312 323 219 0 chr5 96645067 96645231 -55892028 - L1M LINE L1 -2073 5809 5610 2 1322 456 116 0 0 chr5 96645244 96645330 -55891929 + (TA)n Simple_repeat Simple_repeat 1 86 0 2 1322 210 37 0 0 chr5 96645330 96645356 -55891903 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1322 316 277 0 35 chr5 96645399 96645485 -55891774 + BC1_Mm scRNA scRNA 13 95 -57 2 1322 323 288 36 0 chr5 96646175 96646286 -55890973 - L1M LINE L1 -756 5368 5254 2 1322 1479 215 50 3 chr5 96646618 96646977 -55890282 - Lx5 LINE L1 -629 6421 6046 2 1322 644 228 20 20 chr5 96647005 96647153 -55890106 - B1_Mur1 SINE Alu -1 148 1 2 1322 609 27 0 0 chr5 96647235 96647310 -55889949 + (TTC)n Simple_repeat Simple_repeat 2 76 0 2 1322 310 238 181 8 chr5 96647438 96647565 -55889694 - L1MCc LINE L1 -5191 1232 1084 2 1322 355 384 143 8 chr5 96647592 96647836 -55889423 - L1MCc LINE L1 -5335 1088 812 2 1322 276 297 88 0 chr5 96649085 96649176 -55888083 - B1F SINE Alu -30 119 21 3 1322 26 74 0 0 chr5 96649366 96649420 -55887839 + AT_rich Low_complexity Low_complexity 1 54 0 3 1322 741 300 99 62 chr5 96649882 96650305 -55886954 - MLT1D LTR MaLR -2 503 65 3 1322 835 287 44 87 chr5 96650326 96650692 -55886567 - ORR1E LTR MaLR -6 353 4 3 1322 429 294 76 124 chr5 96650920 96651211 -55886048 - MLT1H LTR MaLR -143 406 130 3 1322 455 275 47 17 chr5 96651647 96651843 -55885416 + L1MA4 LINE L1 5625 5826 -474 3 1322 603 0 0 0 chr5 96651843 96651910 -55885349 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 3 1322 455 257 79 0 chr5 96651910 96651956 -55885303 + L1MA4 LINE L1 5827 5874 -426 3 1322 388 271 71 0 chr5 96652138 96652261 -55884998 - L1M4 LINE L1 -375 5803 5674 3 1322 880 169 0 0 chr5 96652261 96652403 -55884856 - B1_Mur3 SINE Alu -6 143 2 3 1322 388 271 71 0 chr5 96652403 96652434 -55884825 - L1M4 LINE L1 -505 5673 5639 3 1322 852 156 200 0 chr5 96653189 96653369 -55883890 + URR1B DNA MER1_type 5 220 -5 3 1322 799 157 0 56 chr5 96653521 96653663 -55883596 - B1_Mur4 SINE Alu -1 149 16 3 1322 232 191 43 0 chr5 96654025 96654072 -55883187 - ID4_ SINE ID -10 73 25 3 1322 329 294 40 20 chr5 96655074 96655214 -55882045 + PB1D10 SINE Alu 1 149 0 3 1322 501 164 31 101 chr5 96656172 96656301 -55880958 - B1_Mur4 SINE Alu 0 150 31 3 1322 1201 61 0 0 chr5 96656320 96656467 -55880792 - B1_Mus1 SINE Alu 0 148 2 3 1322 660 26 0 0 chr5 96656826 96656904 -55880355 + (TTTA)n Simple_repeat Simple_repeat 2 79 0 3 1322 991 222 10 20 chr5 96656904 96657102 -55880157 - B3 SINE B2 -13 203 8 3 1322 508 271 73 60 chr5 96657821 96658053 -55879206 - RMER5 LTR ERV1 -21 513 279 3 1322 1343 174 0 9 chr5 96659028 96659243 -55878016 + B3 SINE B2 4 216 0 3 1322 212 338 90 0 chr5 96659605 96659738 -55877521 + MIR SINE MIR 29 173 -89 3 1322 1014 136 0 20 chr5 96661208 96661358 -55875901 + B1_Mus1 SINE Alu 1 147 -1 3 1322 473 84 14 0 chr5 96663347 96663418 -55873841 + (TC)n Simple_repeat Simple_repeat 1 72 0 3 1322 438 200 0 32 chr5 96663543 96663636 -55873623 - B4A SINE B4 -4 288 199 3 1322 228 354 33 39 chr5 96664010 96664163 -55873096 + L2a LINE L2 3273 3424 -2 3 1322 294 152 0 0 chr5 96664643 96664702 -55872557 + CT-rich Low_complexity Low_complexity 3 61 0 3 1322 231 355 138 40 chr5 96665613 96665989 -55871270 - L2 LINE L2 -461 2958 2546 3 1322 335 270 138 37 chr5 96666253 96666499 -55870760 + L1M4 LINE L1 2143 2413 -3733 3 1322 1059 211 18 0 chr5 96666556 96666784 -55870475 + Lx7 LINE L1 6767 6998 -698 3 1322 369 0 0 0 chr5 96666841 96666882 -55870377 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1322 366 23 0 0 chr5 96666984 96667027 -55870232 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1322 312 186 8 78 chr5 96667035 96667163 -55870096 + Lx7 LINE L1 7578 7696 0 3 1322 335 337 101 48 chr5 96667381 96667748 -55869511 - MLT1F2 LTR MaLR -158 469 1 3 1322 1424 64 36 26 chr5 96668211 96668403 -55868856 - B2_Mm2 SINE B2 0 195 2 3 1322 22 56 0 0 chr5 96668530 96668566 -55868693 + AT_rich Low_complexity Low_complexity 1 36 0 3 1322 2515 203 47 21 chr5 96669031 96669156 -55868103 - Lx9 LINE L1 0 7644 7522 3 1322 189 0 0 0 chr5 96669156 96669177 -55868082 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1322 2515 203 47 21 chr5 96669177 96669610 -55867649 - Lx9 LINE L1 -123 7521 7074 3 1322 313 192 0 0 chr5 96670828 96670880 -55866379 + L1ME1 LINE L1 45 96 -6304 3 1322 231 229 0 35 chr5 96670888 96670974 -55866285 + L1ME1 LINE L1 3824 3906 -2413 3 1322 237 243 100 0 chr5 96671366 96671436 -55865823 + L1ME1 LINE L1 3966 4042 -2277 3 1322 241 296 0 27 chr5 96671534 96671607 -55865652 + tRNA-Ala-GCY_ tRNA tRNA 5 75 0 3 1322 665 248 26 40 chr5 96671652 96671803 -55865456 - B3A SINE B2 0 198 50 3 1322 224 139 28 0 chr5 96671774 96671810 -55865449 - B4A SINE B4 -213 79 43 3 1322 485 280 184 32 chr5 96671819 96672413 -55864846 + L1ME1 LINE L1 4159 4842 -1477 3 1322 1022 235 108 27 chr5 96672421 96672495 -55864764 + B4A SINE B4 8 79 -213 3 1322 684 0 0 0 chr5 96672495 96672571 -55864688 + (TAGA)n Simple_repeat Simple_repeat 4 79 0 3 1322 1022 235 108 27 chr5 96672571 96672754 -55864505 + B4A SINE B4 80 286 -6 3 1322 229 155 121 0 chr5 96672799 96672857 -55864402 + L1ME1 LINE L1 4823 4887 -1432 3 1322 433 255 78 0 chr5 96672870 96672972 -55864287 + PB1D9 SINE Alu 2 111 -9 3 1322 22 35 0 0 chr5 96672972 96673001 -55864258 + AT_rich Low_complexity Low_complexity 1 29 0 3 1322 1002 273 179 52 chr5 96673450 96674219 -55863040 + L1ME1 LINE L1 5432 6298 -54 3 1322 773 236 60 16 chr5 96674230 96674415 -55862844 + B3A SINE B2 2 194 -4 3 1322 515 250 44 153 chr5 96674445 96674648 -55862611 - B3A SINE B2 -16 182 2 3 1322 314 338 123 43 chr5 96675379 96675728 -55861531 - L1MC LINE L1 -2098 5784 5408 3 1322 1630 52 0 16 chr5 96675955 96676149 -55861110 - B2_Mm1t SINE B2 -1 192 2 3 1322 5060 62 13 16 chr5 96676163 96676798 -55860461 - L1_Mus1 LINE L1 -1 6566 5934 3 1322 523 288 23 8 chr5 96677332 96677465 -55859794 + RSINE1 SINE B4 2 136 -29 3 1322 395 247 11 22 chr5 96677548 96677639 -55859620 + PB1D10 SINE Alu 28 117 0 3 1322 261 57 0 0 chr5 96677647 96677682 -55859577 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1322 2708 215 77 16 chr5 96677694 96678318 -55858941 - Lx9 LINE L1 -591 7053 6392 3 1322 4173 192 78 48 chr5 96678479 96679665 -55857594 - Lx9 LINE L1 -1693 5951 4698 3 1322 298 75 37 19 chr5 96680368 96680422 -55856837 + (TATG)n Simple_repeat Simple_repeat 4 58 0 3 1322 32 26 0 0 chr5 96681809 96681848 -55855411 + AT_rich Low_complexity Low_complexity 1 39 0 3 1322 912 288 50 29 chr5 96682219 96682498 -55854761 + B4A SINE B4 8 292 0 3 1322 309 345 0 8 chr5 96682559 96682676 -55854583 + PB1D10 SINE Alu 1 116 -1 3 1322 303 204 113 150 chr5 96683661 96683794 -55853465 + B3A SINE B2 66 193 -5 3 1322 266 241 40 79 chr5 96683947 96684073 -55853186 + L1MEf LINE L1 33 153 -6394 3 1322 342 264 130 59 chr5 96684178 96684347 -55852912 + L1MEf LINE L1 1383 1563 -5077 3 1322 347 270 78 35 chr5 96684754 96684896 -55852363 + B1F2 SINE Alu 1 148 -1 3 1322 220 235 0 38 chr5 96684931 96684984 -55852275 - PB1D10 SINE Alu 0 117 67 3 1322 399 309 43 92 chr5 96684939 96685146 -55852113 - ID_B1 SINE B4 -7 217 21 3 1322 597 331 97 28 chr5 96685444 96685804 -55851455 + L1M4 LINE L1 5263 5647 -536 3 1322 304 262 119 0 chr5 96685849 96685933 -55851326 - B3 SINE B2 -122 94 1 3 1322 507 259 45 11 chr5 96686150 96686326 -55850933 - L1ME4a LINE L1 -245 5879 5698 3 1322 643 288 39 43 chr5 96687324 96687531 -55849728 + MER58A DNA MER1_type 19 224 0 3 1322 297 319 60 106 chr5 96687740 96688024 -55849235 + Charlie8 DNA MER1_type 34 304 -2124 3 1322 603 231 41 27 chr5 96688324 96688471 -55848788 - B1F2 SINE Alu 0 149 1 3 1322 196 221 151 0 chr5 96688543 96688629 -55848630 + MIR SINE MIR 146 244 -18 3 1322 212 324 57 29 chr5 96688730 96688835 -55848424 - L3 LINE CR1 -5 4484 4377 3 1322 861 246 32 63 chr5 96688905 96689126 -55848133 - B3 SINE B2 0 216 3 3 1322 703 279 31 19 chr5 96689207 96689368 -55847891 - RSINE1 SINE B4 0 165 3 3 1322 25 0 0 0 chr5 96689481 96689506 -55847753 + AT_rich Low_complexity Low_complexity 1 25 0 3 1322 870 283 10 15 chr5 96690542 96690743 -55846516 + B4A SINE B4 89 288 -4 3 1322 457 87 29 0 chr5 96691806 96691875 -55845384 - ORR1A4 LTR MaLR 0 394 324 3 1322 1011 164 36 16 chr5 96691959 96692151 -55845108 - Lx4A LINE L1 0 7058 6863 3 1322 1610 95 0 5 chr5 96692151 96692373 -55844886 + L1_Mur2 LINE L1 5081 5301 -576 3 1322 1532 161 11 46 chr5 96692373 96692653 -55844606 - ORR1A4 LTR MaLR -59 270 1 3 1322 2548 161 44 2 chr5 96693656 96694091 -55843168 - Lx5 LINE L1 0 7050 6598 3 1322 745 226 260 4 chr5 96694450 96694677 -55842582 - B4A SINE B4 -6 286 2 3 1322 886 207 112 0 chr5 96694979 96695167 -55842092 - B3 SINE B2 -6 210 2 3 1322 195 291 88 26 chr5 96695479 96695592 -55841667 + MER5B DNA MER1_type 59 178 0 3 1322 51 75 0 0 chr5 96695625 96695732 -55841527 + AT_rich Low_complexity Low_complexity 1 107 0 3 1322 795 260 88 0 chr5 96695732 96695913 -55841346 - B3A SINE B2 -1 197 1 3 1322 689 262 9 62 chr5 96696448 96696672 -55840587 - B3A SINE B2 -4 212 1 3 1322 419 285 44 44 chr5 96697216 96697374 -55839885 + RSINE1 SINE B4 2 159 -6 3 1322 3190 177 56 17 chr5 96697534 96698126 -55839133 + RLTR18 LTR ERVK 1 615 -1 3 1322 254 326 75 11 chr5 96698404 96698497 -55838762 + ID4_ SINE ID 1 99 -53 3 1322 326 284 179 29 chr5 96699335 96699614 -55837645 - L1ME3A LINE L1 -7 6166 5846 3 1322 239 289 48 0 chr5 96699727 96699810 -55837449 - L1ME3A LINE L1 -460 5702 5616 3 1322 393 291 12 20 chr5 96700896 96701016 -55836243 - PB1D10 SINE Alu -27 122 9 3 1322 1068 155 34 182 chr5 96701350 96701660 -55835599 - L1_Mur3 LINE L1 -2633 3247 2994 3 1322 210 37 0 0 chr5 96701660 96701687 -55835572 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1322 1068 155 34 182 chr5 96701687 96701754 -55835505 - L1_Mur3 LINE L1 -2887 2993 2927 3 1322 3444 23 43 10 chr5 96701760 96702158 -55835101 + IAPLTR2a LTR ERVK 1 411 0 3 1322 961 137 25 85 chr5 96702159 96702358 -55834901 + IAPEz-int LTR ERVK 9 195 -6286 3 1322 231 321 0 0 chr5 96702358 96702411 -55834848 + RLTR27 LTR ERVK 223 275 -34 3 1322 932 60 8 0 chr5 96702411 96702528 -55834731 + IAPEz-int LTR ERVK 168 285 -6196 3 1322 10995 61 41 33 chr5 96702528 96704007 -55833252 + IAPEz-int LTR ERVK 211 1700 -4781 3 1322 6340 68 13 17 chr5 96704000 96704832 -55832427 + IAPEz-int LTR ERVK 5651 6479 -2 3 1322 3441 23 43 10 chr5 96704834 96705232 -55832027 + IAPLTR2a LTR ERVK 1 411 0 3 1322 7912 162 56 23 chr5 96705233 96707156 -55830103 - L1_Mur3 LINE L1 -2954 2926 938 3 1322 306 329 65 18 chr5 96707152 96707322 -55829937 - L1M4 LINE L1 -2459 3687 3510 3 1322 739 292 97 26 chr5 96707409 96707760 -55829499 - L1M4 LINE L1 -3142 3004 2629 3 1322 222 37 0 0 chr5 96707973 96708000 -55829259 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1322 396 0 0 0 chr5 96708000 96708043 -55829216 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1322 475 320 102 0 chr5 96708140 96708287 -55828972 + RSINE1 SINE B4 2 163 -2 3 1322 681 302 54 71 chr5 96708609 96708905 -55828354 - B4A SINE B4 0 292 2 3 1322 441 233 48 19 chr5 96709474 96709579 -55827680 - PB1D10 SINE Alu -8 109 2 3 1322 2262 145 67 21 chr5 96709841 96710215 -55827044 - ORR1B1 LTR MaLR 0 394 4 3 1322 1089 244 170 11 chr5 96710335 96710799 -55826460 - Lx8 LINE L1 -7 7466 6929 4 1322 245 210 16 0 chr5 96710895 96710957 -55826302 + (TA)n Simple_repeat Simple_repeat 1 63 0 4 1322 30405 60 6 1 chr5 96711062 96715611 -55821648 - L1Md_F2 LINE L1 0 6582 2010 4 1322 42040 9 0 1 chr5 96715610 96722810 -55814449 - L1Md_A LINE L1 0 6582 1 4 1322 5951 125 6 5 chr5 96722811 96724425 -55812834 - L1Md_F2 LINE L1 -3858 2025 452 4 1322 23 0 0 0 chr5 96724679 96724702 -55812557 + AT_rich Low_complexity Low_complexity 1 23 0 4 1322 247 355 9 18 chr5 96725400 96725512 -55811747 + MLT1A1 LTR MaLR 1 111 -297 4 1322 717 214 22 52 chr5 96725517 96725766 -55811493 + RMER19B LTR ERVK 1 203 -699 4 1322 2277 127 87 38 chr5 96725766 96726217 -55811042 + IAPLTR2_Mm LTR ERVK 1 473 -2 4 1322 2443 44 3 3 chr5 96726223 96726519 -55810740 - RLTR10-int LTR ERVK -1390 597 302 4 1322 2663 63 25 52 chr5 96726519 96726920 -55810339 - RLTR10 LTR ERVK 0 390 1 4 1322 9001 18 0 0 chr5 96726922 96727917 -55809342 - RLTR10-int LTR ERVK -3 1984 990 4 1322 369 261 51 19 chr5 96727999 96728155 -55809104 - RLTR10-int LTR ERVK -5987 1594 1434 4 1322 6137 25 1 0 chr5 96728198 96728888 -55808371 - RLTR10-int LTR ERVK -995 992 302 4 1322 1598 90 35 14 chr5 96728888 96729171 -55808088 - RLTR10 LTR ERVK 0 390 102 4 1322 1915 193 133 94 chr5 96729141 96729833 -55807426 + RMER19B LTR ERVK 168 886 -16 4 1322 1393 87 0 5 chr5 96729833 96730019 -55807240 + B2_Mm2 SINE B2 2 186 -9 4 1322 326 210 37 0 chr5 96730275 96730356 -55806903 + MTEa LTR MaLR 275 358 -21 4 1322 234 204 0 0 chr5 96730404 96730448 -55806811 + B3A SINE B2 2 45 -153 4 1322 4798 93 0 15 chr5 96730448 96731133 -55806126 - L1_Mm LINE L1 -1786 4097 3423 4 1323 677 285 24 0 chr5 96731137 96731302 -55805957 + B3 SINE B2 48 216 0 4 1323 237 33 0 0 chr5 96731302 96731332 -55805927 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 4 1323 991 302 39 33 chr5 96731557 96731889 -55805370 - MTE2b LTR MaLR -45 334 1 4 1323 398 20 20 0 chr5 96732469 96732520 -55804739 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1323 291 234 12 47 chr5 96732645 96732730 -55804529 - ID4_ SINE ID -1 82 1 4 1323 324 0 0 0 chr5 96735279 96735315 -55801944 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1323 636 255 31 21 chr5 96736345 96736537 -55800722 - B4A SINE B4 -98 194 1 4 1323 223 302 47 0 chr5 96736537 96736623 -55800636 + L2 LINE L2 2792 2881 -538 4 1323 322 353 37 0 chr5 96738051 96738187 -55799072 - MER3 DNA MER1_type -17 192 52 4 1323 200 231 0 4 chr5 96738342 96738395 -55798864 - L2a LINE L2 0 3426 3324 4 1323 490 306 116 42 chr5 96738586 96738947 -55798312 - MER21B LTR ERV1 -113 750 363 4 1323 465 300 159 78 chr5 96738970 96739241 -55798018 - MER21B LTR ERV1 -551 312 20 4 1323 22 0 0 0 chr5 96740154 96740176 -55797083 + AT_rich Low_complexity Low_complexity 1 22 0 4 1323 186 43 0 0 chr5 96740344 96740367 -55796892 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1323 1015 182 54 5 chr5 96740379 96740583 -55796676 + B3 SINE B2 2 215 -1 4 1323 258 212 30 0 chr5 96742134 96742233 -55795026 + CT-rich Low_complexity Low_complexity 3 104 0 4 1323 572 194 0 37 chr5 96742247 96742434 -55794825 + CT-rich Low_complexity Low_complexity 1 180 0 4 1323 531 0 0 0 chr5 96743002 96743061 -55794198 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 4 1323 225 220 20 0 chr5 96743159 96743209 -55794050 + CT-rich Low_complexity Low_complexity 1 51 0 4 1323 279 333 79 23 chr5 96744213 96744428 -55792831 + MTEa LTR MaLR 38 264 -115 4 1323 515 315 83 65 chr5 96744306 96744683 -55792576 + MT2A LTR ERVL 135 562 0 4 1323 625 245 153 9 chr5 96744684 96744939 -55792320 - L1M2 LINE L1 -633 5667 5375 4 1323 1642 214 42 71 chr5 96745718 96745942 -55791317 - L1M2 LINE L1 -1643 4500 4267 4 1323 581 72 54 0 chr5 96745942 96746053 -55791206 + (TCTG)n Simple_repeat Simple_repeat 2 118 0 4 1323 1642 214 42 71 chr5 96746053 96746112 -55791147 - L1M2 LINE L1 -1877 4266 4237 4 1323 708 265 0 0 chr5 96746112 96746259 -55791000 - B1_Mur2 SINE Alu -1 148 2 4 1323 1642 214 42 71 chr5 96746259 96746498 -55790761 - L1M2 LINE L1 -1907 4236 3992 4 1323 399 318 0 15 chr5 96746501 96746632 -55790627 - MTE-int LTR MaLR -1413 167 39 4 1323 438 333 73 30 chr5 96746688 96747033 -55790226 - MTEb LTR MaLR 0 379 6 4 1323 792 228 161 74 chr5 96747095 96747474 -55789785 + L1MA6 LINE L1 5548 5959 -341 4 1323 401 249 10 2 chr5 96747475 96747589 -55789670 - ORR1D2 LTR MaLR 0 379 261 4 1323 373 250 398 20 chr5 96747685 96747883 -55789376 - B4A SINE B4 -19 273 2 4 1323 505 268 63 0 chr5 96747916 96748043 -55789216 - L1MA6 LINE L1 -21 6279 6145 4 1323 463 271 53 38 chr5 96748307 96748525 -55788734 - L1MA6 LINE L1 -126 6171 5955 4 1323 730 137 52 5 chr5 96749145 96749286 -55787973 + B2_Mm2 SINE B2 2 155 -61 4 1323 477 0 0 0 chr5 96749293 96749346 -55787913 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 4 1323 333 0 0 0 chr5 96749839 96749876 -55787383 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1323 556 309 71 39 chr5 96749891 96750174 -55787085 - B4 SINE B4 0 292 1 4 1323 552 257 104 26 chr5 96750614 96750806 -55786453 + MLT2B2 LTR ERVL 1 207 -313 4 1323 930 275 29 4 chr5 96751286 96751563 -55785696 + MLT2B2 LTR ERVL 224 507 -8 4 1323 25 0 0 0 chr5 96751726 96751751 -55785508 + AT_rich Low_complexity Low_complexity 1 25 0 4 1323 1240 48 0 0 chr5 96753163 96753310 -55783949 + B1_Mus2 SINE Alu 1 147 0 4 1323 612 156 59 7 chr5 96754002 96754138 -55783121 + B3 SINE B2 3 145 -71 4 1323 649 179 109 14 chr5 96754127 96754274 -55782985 + B3 SINE B2 14 174 -42 4 1323 231 343 0 0 chr5 96754769 96754836 -55782423 - ID4_ SINE ID -16 67 1 4 1323 428 264 133 137 chr5 96754909 96755194 -55782065 + B4A SINE B4 6 289 -3 4 1323 204 322 142 26 chr5 96755422 96755655 -55781604 - L2a LINE L2 -57 3369 3110 4 1323 816 219 26 97 chr5 96756113 96756340 -55780919 + B3 SINE B2 6 216 0 4 1323 319 314 138 5 chr5 96756776 96756971 -55780288 + MER2 DNA MER2_type 1 221 -124 4 1323 449 298 85 45 chr5 96757015 96757261 -55779998 + L1MA5 LINE L1 6045 6300 0 4 1323 505 282 32 0 chr5 96758414 96758538 -55778721 - ID_B1 SINE B4 -12 212 85 4 1323 454 257 41 41 chr5 96758987 96759160 -55778099 - B3A SINE B2 -2 196 9 4 1323 21 0 0 0 chr5 96759558 96759579 -55777680 + AT_rich Low_complexity Low_complexity 1 21 0 4 1323 657 352 38 19 chr5 96759721 96759987 -55777272 - B4A SINE B4 -20 272 2 4 1323 751 275 101 19 chr5 96760064 96760331 -55776928 + B4A SINE B4 1 289 -3 4 1323 339 285 53 47 chr5 96760628 96760817 -55776442 + MIR SINE MIR 36 228 -40 4 1323 223 173 250 0 chr5 96761642 96761694 -55775565 - ID4 SINE ID -8 75 11 4 1323 598 276 91 91 chr5 96761726 96761854 -55775405 - Lx8 LINE L1 -3 7470 7358 4 1323 555 16 0 0 chr5 96761854 96761918 -55775341 + (TTCC)n Simple_repeat Simple_repeat 2 65 0 4 1323 598 276 91 91 chr5 96761918 96762059 -55775200 - Lx8 LINE L1 -116 7357 7225 4 1323 528 45 0 0 chr5 96762059 96762126 -55775133 + (TCCC)n Simple_repeat Simple_repeat 3 69 0 4 1323 598 276 91 91 chr5 96762126 96762186 -55775073 - Lx8 LINE L1 -249 7224 7141 4 1323 240 81 30 61 chr5 96762281 96762347 -55774912 + A-rich Low_complexity Low_complexity 3 66 0 4 1323 1108 238 34 40 chr5 96762351 96762649 -55774610 - Lx7 LINE L1 -338 7358 7063 4 1323 697 253 16 27 chr5 96762651 96762834 -55774425 - Lx8 LINE L1 -326 7147 6967 4 1323 365 255 90 9 chr5 96762999 96763110 -55774149 - PB1D7 SINE Alu 0 120 1 4 1323 210 321 0 0 chr5 96763340 96763393 -55773866 - B4A SINE B4 -155 137 85 4 1323 338 209 0 11 chr5 96763438 96763453 -55773806 + (TA)n Simple_repeat Simple_repeat 2 16 0 4 1323 740 42 10 0 chr5 96763453 96763549 -55773710 + (CA)n Simple_repeat Simple_repeat 2 98 0 4 1323 338 209 0 11 chr5 96763549 96763620 -55773639 + (TA)n Simple_repeat Simple_repeat 2 71 0 4 1323 1372 200 25 0 chr5 96763620 96763905 -55773354 - Lx6 LINE L1 -15 7445 7154 4 1323 1983 174 60 25 chr5 96763911 96764313 -55772946 + MTC LTR MaLR 6 421 0 4 1323 184 354 0 0 chr5 96764607 96764689 -55772570 + MIR3 SINE MIR 95 176 -32 4 1323 25 0 0 0 chr5 96765009 96765034 -55772225 + AT_rich Low_complexity Low_complexity 1 25 0 4 1323 405 214 0 0 chr5 96765594 96765662 -55771597 + PB1D10 SINE Alu 24 91 -26 4 1323 393 292 180 38 chr5 96765662 96765929 -55771330 - MTEa LTR MaLR 0 379 75 4 1323 3406 35 5 0 chr5 96765962 96766356 -55770903 - MTA_Mm LTR MaLR 0 396 1 4 1323 683 182 27 40 chr5 96766887 96767036 -55770223 + B1_Mur3 SINE Alu 2 148 -1 4 1323 186 133 0 0 chr5 96767317 96767347 -55769912 + (TATATG)n Simple_repeat Simple_repeat 5 34 0 4 1323 302 205 94 78 chr5 96767351 96767531 -55769728 + Lx9 LINE L1 7458 7640 -4 4 1323 847 206 44 16 chr5 96767585 96767768 -55769491 - B3 SINE B2 -23 193 6 4 1323 243 0 0 0 chr5 96767872 96767899 -55769360 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4 1323 21 82 0 0 chr5 96768076 96768125 -55769134 + AT_rich Low_complexity Low_complexity 1 49 0 4 1323 2185 90 42 44 chr5 96768425 96768785 -55768474 + Lx LINE L1 6296 6654 0 4 1323 485 297 0 0 chr5 96769137 96769285 -55767974 - B1F2 SINE Alu 0 149 2 4 1323 325 244 25 13 chr5 96769964 96770043 -55767216 - ID4 SINE ID -1 82 3 4 1323 284 301 62 108 chr5 96770319 96770513 -55766746 - Tigger7 DNA MER2_type -28 2463 2279 4 1323 189 0 0 0 chr5 96770513 96770534 -55766725 + (TC)n Simple_repeat Simple_repeat 2 22 0 4 1323 188 34 0 33 chr5 96770752 96770782 -55766477 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1323 1076 45 38 0 chr5 96770782 96770914 -55766345 - B1_Mus2 SINE Alu -10 137 1 4 1323 352 255 43 75 chr5 96771179 96771211 -55766048 - B3A SINE B2 0 198 171 4 1323 492 62 0 0 chr5 96771211 96771275 -55765984 + (TG)n Simple_repeat Simple_repeat 1 64 0 4 1323 352 255 43 75 chr5 96771275 96771403 -55765856 - B3A SINE B2 -28 170 43 4 1323 444 338 22 0 chr5 96771687 96771823 -55765436 - RSINE1 SINE B4 -2 163 25 4 1323 225 65 0 0 chr5 96771827 96771858 -55765401 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 4 1323 351 44 0 0 chr5 96771923 96771968 -55765291 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1323 183 42 0 0 chr5 96772428 96772452 -55764807 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 1323 291 161 0 0 chr5 96772565 96772621 -55764638 + CT-rich Low_complexity Low_complexity 2 57 0 4 1323 387 216 28 77 chr5 96772895 96773057 -55764202 - L1MA6 LINE L1 -1 6299 6146 5 1323 27 29 0 0 chr5 96773462 96773496 -55763763 + AT_rich Low_complexity Low_complexity 1 34 0 5 1323 23 0 0 0 chr5 96773764 96773787 -55763472 + AT_rich Low_complexity Low_complexity 1 23 0 5 1323 396 365 59 0 chr5 96774107 96774277 -55762982 + HERV16-int LTR ERVL 1406 1585 -3411 5 1323 817 316 24 45 chr5 96774596 96774928 -55762331 - MLT1A1 LTR MaLR -2 406 82 5 1323 252 247 0 0 chr5 96774938 96775023 -55762236 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 5 1323 303 182 39 8 chr5 96775025 96775152 -55762107 + (CA)n Simple_repeat Simple_repeat 2 132 0 5 1323 612 260 25 20 chr5 96775158 96775354 -55761905 - RMER15 LTR ERVL -34 541 345 5 1323 928 189 104 0 chr5 96775503 96775704 -55761555 + URR1A DNA MER1_type 5 226 0 5 1323 239 275 74 12 chr5 96775760 96775841 -55761418 - MLT1A1 LTR MaLR -322 86 1 5 1323 320 259 54 132 chr5 96775880 96776009 -55761250 + PB1D7 SINE Alu 2 120 0 5 1323 392 300 48 78 chr5 96776196 96776402 -55760857 + MLT1D LTR MaLR 298 497 -8 5 1323 312 329 20 27 chr5 96776424 96776574 -55760685 + HERV16-int LTR ERVL 2357 2505 -2980 5 1323 1018 213 14 23 chr5 96777731 96777947 -55759312 - B3 SINE B2 0 216 3 5 1323 324 0 0 0 chr5 96778324 96778360 -55758899 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1323 264 219 102 71 chr5 96779519 96779661 -55757598 - L1ME1 LINE L1 -1815 5970 5823 5 1323 255 173 0 0 chr5 96779664 96779716 -55757543 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1323 498 292 133 15 chr5 96779813 96779979 -55757280 - B4A SINE B4 -73 219 36 5 1323 1932 135 176 8 chr5 96779979 96780338 -55756921 + MTC LTR MaLR 3 421 0 5 1323 498 292 133 15 chr5 96780338 96780366 -55756893 - B4A SINE B4 -257 35 3 5 1323 444 272 47 55 chr5 96780374 96780612 -55756647 - L1ME1 LINE L1 -349 5830 5590 5 1323 468 0 0 0 chr5 96780612 96780664 -55756595 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1323 498 308 144 35 chr5 96780664 96781053 -55756206 - L1ME1 LINE L1 -595 5589 5132 5 1323 883 204 14 37 chr5 96781053 96781267 -55755992 + B3 SINE B2 2 210 -6 5 1323 498 345 76 40 chr5 96781267 96781737 -55755522 - L1ME1 LINE L1 -1015 5131 4644 5 1323 1265 266 96 28 chr5 96781738 96782125 -55755134 + L1MEc LINE L1 35 436 -5964 5 1323 438 114 0 0 chr5 96782125 96782204 -55755055 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1323 1265 266 96 28 chr5 96782204 96782357 -55754902 + L1MEc LINE L1 437 612 -5788 5 1323 509 315 70 82 chr5 96782537 96782925 -55754334 + MLT1D LTR MaLR 121 503 -2 5 1323 577 311 10 118 chr5 96783529 96783926 -55753333 + MLT1D-int LTR MaLR 315 668 -703 5 1323 366 179 0 0 chr5 96783973 96784068 -55753191 + (CA)n Simple_repeat Simple_repeat 1 95 0 5 1323 449 204 23 0 chr5 96784068 96784156 -55753103 - PB1D10 SINE Alu -22 95 6 5 1323 351 378 17 12 chr5 96784339 96784594 -55752665 + MLT1D-int LTR MaLR 722 1019 -470 5 1323 2229 153 186 4 chr5 96784644 96785122 -55752137 - RLTR20D LTR ERVK 0 568 4 5 1323 408 314 130 0 chr5 96785126 96785295 -55751964 + 7SK RNA RNA 55 245 -86 5 1323 453 311 112 39 chr5 96785306 96785611 -55751648 + MLT1D-int LTR MaLR 915 1241 -130 5 1323 433 282 113 7 chr5 96785726 96785876 -55751383 + ERVL-E-int LTR ERVL 702 867 -4800 5 1323 291 307 170 29 chr5 96785971 96786212 -55751047 - ERVL-E-int LTR ERVL -3834 1833 1559 5 1323 312 27 0 0 chr5 96786314 96786351 -55750908 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 5 1323 6936 128 26 10 chr5 96786461 96787557 -55749702 - Lx4B LINE L1 -7 7051 5938 5 1323 2355 221 130 41 chr5 96787565 96788274 -55748985 - Lx7 LINE L1 0 7696 6925 5 1323 321 26 0 0 chr5 96788529 96788567 -55748692 + (TA)n Simple_repeat Simple_repeat 1 38 0 5 1323 2135 70 36 45 chr5 96788693 96789023 -55748236 + ORR1A4 LTR MaLR 3 329 0 5 1323 239 250 0 126 chr5 96789110 96789197 -55748062 + B4A SINE B4 1 76 -216 5 1323 311 327 9 0 chr5 96789220 96789333 -55747926 + B4A SINE B4 177 290 -2 5 1323 336 175 0 0 chr5 96789515 96789578 -55747681 + (CAT)n Simple_repeat Simple_repeat 2 64 0 5 1323 947 137 8 0 chr5 96789580 96789711 -55747548 - B1_Mur2 SINE Alu -13 136 5 5 1323 208 0 30 30 chr5 96789759 96789792 -55747467 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 5 1323 333 0 0 0 chr5 96789962 96789999 -55747260 + (TTA)n Simple_repeat Simple_repeat 1 37 0 5 1323 27 0 0 0 chr5 96792323 96792350 -55744909 + AT_rich Low_complexity Low_complexity 1 27 0 5 1323 731 186 208 33 chr5 96792350 96792533 -55744726 - B3 SINE B2 0 216 2 5 1323 535 298 92 11 chr5 96792568 96792850 -55744409 - L1MA6 LINE L1 -6 6294 5990 5 1323 203 0 37 0 chr5 96792853 96792880 -55744379 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 5 1323 429 20 0 0 chr5 96792966 96793016 -55744243 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1323 809 281 40 33 chr5 96793018 96793294 -55743965 - B4 SINE B4 -14 278 1 5 1323 239 317 59 35 chr5 96794630 96794800 -55742459 - MIRc SINE MIR -5 263 90 5 1323 276 319 73 12 chr5 96795709 96795874 -55741385 - MLT1I LTR MaLR -8 403 229 5 1323 387 0 0 0 chr5 96796006 96796049 -55741210 + (TTA)n Simple_repeat Simple_repeat 3 45 0 5 1323 243 0 0 0 chr5 96796049 96796076 -55741183 + (ATG)n Simple_repeat Simple_repeat 2 28 0 5 1323 777 183 7 21 chr5 96796317 96796462 -55740797 - B1_Mur3 SINE Alu -3 146 4 5 1323 776 269 120 7 chr5 96796486 96796786 -55740473 - L1M5 LINE L1 -400 5779 5446 5 1323 486 70 0 0 chr5 96796903 96796974 -55740285 + (CCAA)n Simple_repeat Simple_repeat 1 71 0 5 1323 387 245 63 9 chr5 96797028 96797139 -55740120 - PB1D10 SINE Alu 0 117 1 5 1323 405 302 47 58 chr5 96798352 96798609 -55738650 - ORR1E LTR MaLR -105 254 1 5 1323 270 324 0 0 chr5 96798651 96798725 -55738534 + ID_B1 SINE B4 86 159 -65 5 1323 351 0 0 0 chr5 96798740 96798779 -55738480 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1323 476 326 113 21 chr5 96798785 96799067 -55738192 - MTE-int LTR MaLR -102 1478 1171 5 1323 595 274 142 0 chr5 96800083 96800280 -55736979 - B4A SINE B4 -35 257 33 5 1323 425 19 19 0 chr5 96800403 96800457 -55736802 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1323 26 0 0 0 chr5 96804477 96804503 -55732756 + GC_rich Low_complexity Low_complexity 1 26 0 5 1323 30 0 0 0 chr5 96804656 96804686 -55732573 + GC_rich Low_complexity Low_complexity 1 30 0 5 1323 270 0 0 0 chr5 96805198 96805228 -55732031 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1323 207 196 0 0 chr5 96806323 96806369 -55730890 + GA-rich Low_complexity Low_complexity 1 46 0 5 1323 1539 111 386 19 chr5 96807819 96808127 -55729132 + MTC LTR MaLR 1 421 0 5 1323 603 144 26 51 chr5 96808191 96808308 -55728951 - RMER15 LTR ERVL 0 575 462 5 1323 706 203 19 105 chr5 96808309 96808518 -55728741 - RMER15 LTR ERVL -382 193 3 5 1323 251 257 27 0 chr5 96810559 96810633 -55726626 + B4 SINE B4 161 236 -56 5 1323 8231 70 2 1 chr5 96810636 96812247 -55725012 + L1_Mus1 LINE L1 4952 6567 0 5 1323 257 288 0 76 chr5 96812258 96812337 -55724922 + B4 SINE B4 216 288 -4 5 1323 250 162 0 26 chr5 96812348 96812424 -55724835 + (CA)n Simple_repeat Simple_repeat 1 74 0 5 1323 215 214 0 14 chr5 96812506 96812577 -55724682 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1323 363 136 0 0 chr5 96812680 96812739 -55724520 + (TA)n Simple_repeat Simple_repeat 2 60 0 5 1323 749 192 31 71 chr5 96813513 96813709 -55723550 + URR1A DNA MER1_type 37 224 -2 5 1323 302 269 0 0 chr5 96813947 96814014 -55723245 + PB1D10 SINE Alu 42 108 -9 5 1323 778 284 45 31 chr5 96814393 96814572 -55722687 - Lx9 LINE L1 -5 7639 7450 5 1323 267 31 0 0 chr5 96814572 96814604 -55722655 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1323 778 284 45 31 chr5 96814604 96814842 -55722417 - Lx9 LINE L1 -195 7449 7216 5 1323 188 329 157 70 chr5 96816924 96817166 -55720093 - L2b LINE L2 -6 3369 3107 5 1323 199 279 75 12 chr5 96817332 96817412 -55719847 - L2b LINE L2 -530 2889 2805 5 1323 532 288 65 10 chr5 96817413 96817613 -55719646 + Tigger13a DNA MER2_type 265 475 -296 5 1323 315 301 7 22 chr5 96817648 96817759 -55719500 + ID4_ SINE ID 9 115 -37 5 1323 924 217 111 0 chr5 96818268 96818457 -55718802 + B3 SINE B2 1 210 -6 5 1323 286 266 42 199 chr5 96820669 96820825 -55716434 + MER3 DNA MER1_type 23 154 -55 5 1323 477 0 0 0 chr5 96820825 96820878 -55716381 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 5 1323 333 0 0 0 chr5 96820879 96820916 -55716343 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1323 735 215 26 20 chr5 96820916 96821068 -55716191 - RSINE1 SINE B4 -10 155 3 5 1323 286 266 42 199 chr5 96821068 96821124 -55716135 + MER3 DNA MER1_type 155 203 -6 5 1323 583 217 26 53 chr5 96821138 96821289 -55715970 - B1_Mur1 SINE Alu -1 148 2 5 1323 1368 92 0 0 chr5 96822081 96822837 -55714422 + (TTC)n Simple_repeat Simple_repeat 1 756 0 5 1323 666 68 0 0 chr5 96822837 96822925 -55714334 + (TCC)n Simple_repeat Simple_repeat 3 90 0 5 1323 1502 199 149 3 chr5 96822927 96823270 -55713989 + MTD LTR MaLR 13 405 -14 5 1323 191 143 0 87 chr5 96823431 96823477 -55713782 + L3 LINE CR1 4342 4383 -106 5 1323 306 274 0 0 chr5 96823575 96823688 -55713571 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 5 1323 470 191 28 9 chr5 96823689 96823795 -55713464 - PB1D9 SINE Alu -1 119 12 5 1323 222 289 31 0 chr5 96824308 96824405 -55712854 + (TATATG)n Simple_repeat Simple_repeat 3 102 0 5 1323 531 69 0 0 chr5 96825561 96825633 -55711626 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1323 225 0 0 0 chr5 96825949 96825974 -55711285 + (TTA)n Simple_repeat Simple_repeat 1 25 0 5 1323 3956 38 2 8 chr5 96827760 96828237 -55709022 + L1Md_F2 LINE L1 6097 6570 -12 5 1323 288 220 50 99 chr5 96828402 96828523 -55708736 - PB1 SINE Alu 0 127 13 5 1323 535 292 54 38 chr5 96828424 96828609 -55708650 - ID_B1 SINE B4 -35 189 2 5 1323 393 255 112 0 chr5 96828644 96828742 -55708517 + B3A SINE B2 2 110 -88 5 1323 441 248 19 0 chr5 96829702 96829807 -55707452 + PB1D10 SINE Alu 10 116 -1 5 1323 1906 237 46 21 chr5 96830634 96831113 -55706146 + Lx6 LINE L1 6944 7434 -26 5 1323 660 158 0 0 chr5 96831121 96831397 -55705862 + (CAGAGA)n Simple_repeat Simple_repeat 1 276 0 5 1323 259 58 77 0 chr5 96832622 96832674 -55704585 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 5 1323 606 252 141 75 chr5 96832806 96833111 -55704148 + MTE2a LTR MaLR 41 365 -14 5 1323 828 243 9 2 chr5 96833181 96833373 -55703886 + B4 SINE B4 15 224 -68 6 1323 189 0 0 0 chr5 96833373 96833394 -55703865 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 6 1323 718 262 93 19 chr5 96833394 96833415 -55703844 + B4A SINE B4 225 244 -48 6 1323 237 296 0 0 chr5 96834004 96834058 -55703201 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1323 311 275 18 27 chr5 96834181 96834293 -55702966 + Tigger15a DNA TcMar 6 116 -599 6 1323 210 171 0 0 chr5 96836010 96836051 -55701208 + (CAG)n Simple_repeat Simple_repeat 2 42 0 6 1323 400 287 0 7 chr5 96836054 96836191 -55701068 + HAL1-2a_MD LINE L1 2353 2488 -536 6 1323 525 205 0 0 chr5 96836211 96836338 -55700921 + (CAA)n Simple_repeat Simple_repeat 2 128 0 6 1323 604 241 71 21 chr5 96836394 96836534 -55700725 + B1_Mur1 SINE Alu 3 149 0 6 1323 956 323 63 62 chr5 96836599 96837229 -55700030 + Lx8 LINE L1 6602 7232 -241 6 1323 2052 245 102 24 chr5 96837456 96838238 -55699021 - Charlie2b DNA MER1_type -165 2617 1775 6 1323 274 280 180 23 chr5 96838228 96838356 -55698903 - Charlie2b DNA MER1_type -2452 330 183 6 1323 306 0 0 0 chr5 96838411 96838445 -55698814 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 6 1323 366 42 0 0 chr5 96838947 96838995 -55698264 + (CCAA)n Simple_repeat Simple_repeat 4 51 0 6 1323 263 191 0 0 chr5 96839182 96839229 -55698030 - L1M4 LINE L1 -315 5859 5813 6 1323 717 73 0 0 chr5 96839236 96839332 -55697927 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 1323 372 327 11 78 chr5 96839334 96839513 -55697746 - B4A SINE B4 -124 168 2 6 1323 456 262 55 50 chr5 96839513 96839694 -55697565 - L1MB8 LINE L1 -347 5831 5650 6 1323 1620 186 3 7 chr5 96839698 96840007 -55697252 - MTD LTR MaLR -8 411 104 6 1323 381 289 71 25 chr5 96840086 96840330 -55696929 - L1MB8 LINE L1 -578 5606 5350 6 1323 549 305 54 6 chr5 96840358 96840526 -55696733 + B3A SINE B2 1 176 -22 6 1323 228 263 83 58 chr5 96840575 96840696 -55696563 - L1MC5 LINE L1 -27 7934 7811 6 1323 1164 68 0 7 chr5 96840896 96841044 -55696215 - B1_Mm SINE Alu 0 147 1 6 1323 278 200 14 54 chr5 96841161 96841235 -55696024 + LTR48 LTR ERV1 1 71 -716 6 1323 1314 228 70 32 chr5 96841238 96841641 -55695618 + BGLII_B LTR ERVK 6 423 -18 6 1323 367 341 0 31 chr5 96844455 96844585 -55692674 - B4 SINE B4 0 292 167 6 1323 513 115 0 0 chr5 96844589 96844667 -55692592 + (TA)n Simple_repeat Simple_repeat 1 78 0 6 1323 485 255 156 124 chr5 96844708 96844990 -55692269 - B4A SINE B4 0 292 2 6 1323 303 244 35 11 chr5 96845100 96845187 -55692072 - B4A SINE B4 -98 194 106 6 1323 24 0 0 0 chr5 96847864 96847888 -55689371 + AT_rich Low_complexity Low_complexity 1 24 0 6 1323 278 106 0 21 chr5 96848553 96848601 -55688658 + (GAAAA)n Simple_repeat Simple_repeat 2 48 0 6 1323 25 0 0 0 chr5 96848612 96848637 -55688622 + AT_rich Low_complexity Low_complexity 1 25 0 6 1323 648 319 76 3 chr5 96849354 96849643 -55687616 + MLT1B LTR MaLR 1 310 -80 6 1323 189 0 0 0 chr5 96849971 96849992 -55687267 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1323 221 276 0 33 chr5 96851649 96851709 -55685550 + CT-rich Low_complexity Low_complexity 4 61 0 6 1323 522 299 23 0 chr5 96851891 96852068 -55685191 - ID_B1 SINE B4 -42 182 2 6 1323 537 339 53 9 chr5 96852230 96852456 -55684803 + MLT1A0 LTR MaLR 3 238 -127 6 1323 1995 157 6 3 chr5 96852452 96852790 -55684469 - ORR1B1 LTR MaLR -9 385 47 6 1323 271 361 9 9 chr5 96852802 96852911 -55684348 + MLT1A0 LTR MaLR 238 346 -19 6 1323 411 262 9 36 chr5 96855487 96855598 -55681661 - RSINE1 SINE B4 -33 132 25 6 1323 352 162 29 29 chr5 96856205 96856268 -55680991 + B1_Mur4 SINE Alu 18 80 -70 6 1323 813 157 102 0 chr5 96856268 96856434 -55680825 - URR1A DNA MER1_type 0 226 44 6 1323 446 33 17 0 chr5 96856456 96856516 -55680743 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1323 22 0 0 0 chr5 96856781 96856803 -55680456 + AT_rich Low_complexity Low_complexity 1 22 0 6 1323 281 366 6 75 chr5 96858271 96858445 -55678814 + RSINE1 SINE B4 4 165 0 6 1323 364 174 11 23 chr5 96859253 96859341 -55677918 + CT-rich Low_complexity Low_complexity 4 90 0 6 1323 776 244 164 18 chr5 96859408 96859633 -55677626 - MTEb LTR MaLR -121 258 1 6 1323 360 0 0 0 chr5 96860166 96860206 -55677053 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1323 204 40 0 0 chr5 96860845 96860870 -55676389 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 6 1323 275 250 12 0 chr5 96860871 96860955 -55676304 + CT-rich Low_complexity Low_complexity 1 85 0 6 1323 23 33 0 0 chr5 96860982 96861012 -55676247 + AT_rich Low_complexity Low_complexity 1 30 0 6 1324 235 222 37 0 chr5 96862683 96862737 -55674522 + PB1D10 SINE Alu 11 66 -51 6 1324 333 217 0 0 chr5 96862934 96863003 -55674256 + MTEb LTR MaLR 3 71 -308 6 1324 747 219 0 0 chr5 96863005 96863183 -55674076 + (TA)n Simple_repeat Simple_repeat 1 178 0 6 1324 300 79 0 0 chr5 96863185 96863223 -55674036 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1324 649 268 147 11 chr5 96863223 96863502 -55673757 + MTEb LTR MaLR 63 379 0 6 1324 334 349 0 27 chr5 96864129 96864241 -55673018 + PB1D10 SINE Alu 5 113 -4 6 1324 27 0 0 0 chr5 96864927 96864954 -55672305 + AT_rich Low_complexity Low_complexity 1 27 0 6 1324 767 94 17 0 chr5 96865966 96866083 -55671176 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 6 1324 374 326 59 100 chr5 96866244 96866534 -55670725 - B4 SINE B4 -11 281 4 6 1324 198 0 0 0 chr5 96866534 96866556 -55670703 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 6 1324 21 36 0 0 chr5 96867296 96867324 -55669935 + AT_rich Low_complexity Low_complexity 1 28 0 6 1324 1013 293 3 27 chr5 96867333 96867628 -55669631 + B4A SINE B4 1 288 -4 6 1324 1394 290 24 125 chr5 96867816 96868478 -55668781 + MER82 DNA MER2_type 57 651 -2 6 1324 231 216 20 0 chr5 96868868 96868919 -55668340 - ID2 SINE ID 0 83 32 6 1324 2801 61 3 0 chr5 96869444 96869789 -55667470 - ORR1A1 LTR MaLR 0 346 1 6 1324 291 28 0 0 chr5 96870029 96870065 -55667194 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1324 335 233 136 23 chr5 96870929 96871061 -55666198 + MIRc SINE MIR 66 212 -56 6 1324 438 94 0 0 chr5 96872177 96872241 -55665018 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1324 671 207 7 21 chr5 96872271 96872414 -55664845 - B1_Mur3 SINE Alu -8 141 1 6 1324 363 270 103 51 chr5 96872546 96872741 -55664518 - L1MC5 LINE L1 -54 7907 7703 6 1324 486 145 0 12 chr5 96873213 96873297 -55663962 - RLTR20A LTR ERVK -458 83 1 6 1324 6261 33 1 0 chr5 96873708 96874435 -55662824 - L1Md_T LINE L1 0 6582 5855 6 1324 2532 48 42 0 chr5 96874436 96874773 -55662486 + L1Md_A LINE L1 214 564 -6160 6 1324 242 335 125 45 chr5 96875086 96875318 -55661941 + L1MEg LINE L1 508 757 -5327 6 1324 1196 297 8 42 chr5 96875318 96875704 -55661555 - MTEa LTR MaLR -2 377 5 6 1324 242 335 125 45 chr5 96875704 96875830 -55661429 + L1MEg LINE L1 758 895 -5189 6 1324 24 0 0 0 chr5 96875853 96875877 -55661382 + AT_rich Low_complexity Low_complexity 1 24 0 6 1324 327 305 18 74 chr5 96877370 96877499 -55659760 + RSINE1 SINE B4 2 126 -39 6 1324 267 93 0 0 chr5 96877499 96877542 -55659717 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1324 327 305 18 74 chr5 96877542 96877575 -55659684 + RSINE1 SINE B4 127 155 -10 6 1324 218 314 69 53 chr5 96877596 96877727 -55659532 + MIRc SINE MIR 26 158 -110 6 1324 1049 119 44 33 chr5 96878071 96878254 -55659005 + B2_Mm2 SINE B2 2 186 -9 6 1324 209 33 33 0 chr5 96878585 96878615 -55658644 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6 1324 1223 54 0 0 chr5 96878619 96878767 -55658492 - B1_Mus1 SINE Alu 0 148 1 6 1324 251 383 60 30 chr5 96878805 96878972 -55658287 - MIR3 SINE MIR -7 201 30 6 1324 226 50 50 0 chr5 96880090 96880130 -55657129 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 1324 270 116 0 0 chr5 96881345 96881388 -55655871 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1324 473 188 0 0 chr5 96881839 96881924 -55655335 + PB1D9 SINE Alu 3 87 -33 6 1324 243 282 34 34 chr5 96881995 96882083 -55655176 - L2b LINE L2 -26 3349 3262 6 1324 507 225 54 8 chr5 96883149 96883279 -55653980 + B1_Mur2 SINE Alu 2 137 -12 6 1324 195 42 0 0 chr5 96884232 96884256 -55653003 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1324 929 213 59 5 chr5 96884883 96885086 -55652173 + B3 SINE B2 2 215 -1 6 1324 647 184 88 0 chr5 96886095 96886231 -55651028 + B1_Mur2 SINE Alu 2 149 0 6 1324 1090 89 7 14 chr5 96887222 96887370 -55649889 + B1_Mus1 SINE Alu 2 148 0 6 1324 622 307 60 26 chr5 96890008 96890242 -55647017 - Lx8 LINE L1 -226 7247 7006 6 1324 232 274 70 70 chr5 96890468 96890625 -55646634 + MIR SINE MIR 41 197 -65 6 1324 207 88 0 0 chr5 96891238 96891272 -55645987 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1324 1182 49 0 14 chr5 96891587 96891733 -55645526 + B1_Mus1 SINE Alu 5 148 0 6 1324 246 128 0 0 chr5 96891913 96891952 -55645307 + (T)n Simple_repeat Simple_repeat 1 39 0 6 1324 429 232 127 13 chr5 96893859 96894016 -55643243 - L1M2 LINE L1 -2037 4106 3932 6 1324 363 96 0 0 chr5 96894206 96894258 -55643001 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1324 306 302 100 113 chr5 96894274 96894565 -55642694 - B4A SINE B4 0 292 6 6 1324 255 31 0 0 chr5 96895131 96895163 -55642096 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 6 1324 369 295 173 0 chr5 96895895 96896034 -55641225 - MLT1H LTR MaLR -382 167 5 6 1324 329 369 0 26 chr5 96896531 96896684 -55640575 + B1F2 SINE Alu 1 149 0 6 1324 10602 11 0 2 chr5 96896899 96898781 -55638478 - L1Md_A LINE L1 0 6582 4705 6 1324 378 385 37 34 chr5 96898798 96899094 -55638165 + MLT1J1 LTR MaLR 73 369 -75 6 1324 830 314 26 37 chr5 96899982 96900250 -55637009 + B4A SINE B4 2 266 -26 7 1324 345 47 0 0 chr5 96900254 96900297 -55636962 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1324 288 0 0 0 chr5 96900620 96900652 -55636607 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1324 761 76 0 0 chr5 96900652 96900757 -55636502 - B1_Mm SINE Alu 0 147 43 7 1324 257 197 0 116 chr5 96900701 96900770 -55636489 - RLTR25A LTR ERVK -531 572 512 7 1324 190 397 26 0 chr5 96902526 96902642 -55634617 + MIRm SINE MIR 9 127 -149 7 1324 191 250 0 0 chr5 96902908 96902948 -55634311 + L2c LINE L2 3342 3381 -6 7 1324 231 327 19 19 chr5 96904071 96904174 -55633085 + MTC LTR MaLR 3 105 -254 7 1324 551 180 26 35 chr5 96904178 96904293 -55632966 + MTC LTR MaLR 300 413 -8 7 1324 455 241 27 18 chr5 96906437 96906547 -55630712 - PB1D10 SINE Alu -6 111 1 7 1324 252 0 0 0 chr5 96908193 96908221 -55629038 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1324 555 311 88 36 chr5 96909205 96909455 -55627804 - LTR33 LTR ERVL -7 508 246 7 1324 197 337 0 29 chr5 96910268 96910372 -55626887 - L3 LINE CR1 -311 4178 4078 7 1324 199 376 21 21 chr5 96910532 96910676 -55626583 - L3 LINE CR1 -899 3590 3447 7 1324 221 276 35 0 chr5 96910895 96910953 -55626306 - B1F SINE Alu -5 144 85 7 1324 528 237 125 0 chr5 96913906 96914058 -55623201 - MLT1E3 LTR MaLR -406 218 48 7 1324 2884 19 5 83 chr5 96914517 96914915 -55622344 - IAPLTR1_Mm LTR ERVK 0 367 1 7 1324 29415 20 1 1 chr5 96914915 96918187 -55619072 - IAPEz-int LTR ERVK 0 6481 3210 7 1324 7424 81 165 7 chr5 96918186 96919314 -55617945 - IAPEz-int LTR ERVK -5168 1313 8 7 1324 2554 19 5 84 chr5 96919314 96919707 -55617552 - IAPLTR1_Mm LTR ERVK 0 367 6 7 1324 234 0 0 0 chr5 96920796 96920822 -55616437 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 7 1324 209 227 0 43 chr5 96921790 96921836 -55615423 + C-rich Low_complexity Low_complexity 3 46 0 7 1324 215 259 12 24 chr5 96922068 96922138 -55615121 + CT-rich Low_complexity Low_complexity 13 82 0 7 1324 1070 80 6 28 chr5 96922138 96922317 -55614942 + (TCTCC)n Simple_repeat Simple_repeat 3 177 0 7 1324 215 259 12 24 chr5 96922317 96922329 -55614930 + polypyrimidine Low_complexity Low_complexity 1 12 0 7 1324 261 0 0 0 chr5 96922332 96922361 -55614898 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1324 325 283 26 17 chr5 96922604 96922719 -55614540 - PB1D10 SINE Alu -1 116 1 7 1324 298 339 49 49 chr5 96923879 96924084 -55613175 + LTR16E1 LTR ERVL 326 530 -8 7 1324 195 69 0 0 chr5 96924872 96924901 -55612358 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 7 1324 836 143 6 0 chr5 96925785 96925953 -55611306 + (TCTCCC)n Simple_repeat Simple_repeat 1 169 0 7 1324 913 137 25 6 chr5 96926372 96926534 -55610725 + Lx4A LINE L1 6894 7058 0 7 1324 431 260 76 70 chr5 96927021 96927211 -55610048 + MER20 DNA MER1_type 25 214 -5 7 1324 1209 180 13 55 chr5 96928161 96928396 -55608863 + URR1B DNA MER1_type 1 225 0 7 1324 382 258 151 73 chr5 96928885 96929090 -55608169 + B4A SINE B4 9 229 -63 7 1324 429 188 0 0 chr5 96929162 96929247 -55608012 + (CA)n Simple_repeat Simple_repeat 1 85 0 7 1324 429 76 0 37 chr5 96932239 96932321 -55604938 + (TC)n Simple_repeat Simple_repeat 2 80 0 7 1324 342 0 0 0 chr5 96932324 96932362 -55604897 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1324 244 351 0 38 chr5 96932363 96932443 -55604816 - ID4 SINE ID -4 79 3 7 1324 907 306 52 13 chr5 96934031 96934457 -55602802 - L1MB4 LINE L1 -1 6182 5735 7 1324 1325 251 59 31 chr5 96934460 96934847 -55602412 + MTD LTR MaLR 6 403 -16 7 1324 378 0 0 0 chr5 96935376 96935418 -55601841 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1324 291 382 37 26 chr5 96935640 96935831 -55601428 - LTR16A LTR ERVL -142 309 117 7 1324 225 0 0 0 chr5 96936742 96936767 -55600492 + (TTAG)n Simple_repeat Simple_repeat 4 28 0 7 1324 261 0 0 0 chr5 96936767 96936796 -55600463 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1324 286 237 51 10 chr5 96937042 96937140 -55600119 - L1MC5 LINE L1 -51 7910 7809 7 1324 261 291 11 23 chr5 96937140 96937158 -55600101 - ID_B1 SINE B4 -124 100 14 7 1324 303 275 0 14 chr5 96937158 96937228 -55600031 - ID4 SINE ID -1 82 14 7 1324 249 33 0 0 chr5 96937228 96937258 -55600001 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 7 1324 798 264 58 26 chr5 96937835 96938276 -55598983 - L1MB2 LINE L1 -13 6167 5675 7 1324 2549 92 28 3 chr5 96938895 96939255 -55598004 + L1Md_F2 LINE L1 6202 6570 -12 7 1324 245 221 52 0 chr5 96939724 96939801 -55597458 - MLT2B2 LTR ERVL 0 562 482 7 1324 363 279 155 78 chr5 96941579 96941824 -55595435 + B4 SINE B4 7 270 -22 7 1324 428 0 19 0 chr5 96941829 96941881 -55595378 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1324 525 164 0 0 chr5 96941885 96942025 -55595234 + GA-rich Low_complexity Low_complexity 1 140 0 7 1324 472 256 108 54 chr5 96942760 96942983 -55594276 + MER58B DNA MER1_type 59 293 -48 7 1324 1157 75 0 6 chr5 96943337 96943499 -55593760 + (TCTCC)n Simple_repeat Simple_repeat 3 163 0 7 1324 225 0 0 0 chr5 96943966 96943991 -55593268 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1324 693 254 44 33 chr5 96946306 96946579 -55590680 - L1MEg LINE L1 -4444 1640 1365 7 1324 451 304 101 20 chr5 96946585 96946733 -55590526 + RSINE1 SINE B4 4 163 -2 7 1324 21 36 0 0 chr5 96946755 96946783 -55590476 + AT_rich Low_complexity Low_complexity 1 28 0 7 1324 384 345 201 20 chr5 96946818 96947176 -55590083 - L1MEg LINE L1 -4765 1319 897 7 1324 448 278 26 180 chr5 96947260 96947488 -55589771 + B3A SINE B2 6 198 0 7 1324 484 333 118 8 chr5 96947577 96947840 -55589419 - MER20B DNA MER1_type -394 389 98 7 1324 186 143 0 0 chr5 96948368 96948403 -55588856 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 7 1324 216 264 182 58 chr5 96948407 96948544 -55588715 - L2c LINE L2 -4 3383 3230 7 1324 280 221 13 93 chr5 96949647 96949722 -55587537 + MIRm SINE MIR 93 161 -101 7 1324 273 352 0 53 chr5 96951455 96951530 -55585729 - ID2 SINE ID -10 73 3 7 1324 945 177 170 10 chr5 96952606 96952800 -55584459 - URR1B DNA MER1_type 0 225 1 7 1324 998 197 107 8 chr5 96953469 96953730 -55583529 + Lx9 LINE L1 7356 7642 -2 7 1324 513 0 0 0 chr5 96954025 96954082 -55583177 + (TTA)n Simple_repeat Simple_repeat 1 57 0 7 1324 225 336 27 36 chr5 96954417 96954528 -55582731 + MIR SINE MIR 63 172 -90 7 1324 1410 238 66 59 chr5 96954680 96955122 -55582137 - RLTR11B LTR ERVK -8 445 1 7 1324 774 209 29 68 chr5 96955122 96955327 -55581932 - MYSERV-int LTR ERVK 0 6550 6354 7 1324 392 362 60 0 chr5 96955386 96955571 -55581688 - MLT2C2 LTR ERVL -173 291 96 7 1324 446 307 12 30 chr5 96955661 96955829 -55581430 - Tigger5 DNA MER2_type -2213 193 29 7 1324 300 367 101 0 chr5 96957775 96957933 -55579326 - MIRb SINE MIR -14 254 81 7 1324 1651 199 68 32 chr5 96958464 96958864 -55578395 - MTD LTR MaLR -5 414 1 7 1324 350 254 70 6 chr5 96959186 96959385 -55577874 + L1_Rod LINE L1 5151 5432 -730 7 1324 207 0 0 0 chr5 96959387 96959410 -55577849 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1324 1226 43 0 0 chr5 96959410 96959548 -55577711 - B1_Mus1 SINE Alu -10 138 1 7 1324 511 290 53 116 chr5 96959615 96959822 -55577437 + B4 SINE B4 2 195 -97 7 1324 324 0 0 0 chr5 96959935 96959971 -55577288 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1324 351 0 0 0 chr5 96960086 96960125 -55577134 + (TC)n Simple_repeat Simple_repeat 1 39 0 7 1324 315 0 0 0 chr5 96960125 96960159 -55577100 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1324 186 71 0 0 chr5 96960159 96960187 -55577072 + (TA)n Simple_repeat Simple_repeat 1 28 0 7 1324 597 221 112 30 chr5 96960196 96960429 -55576830 + MER58B DNA MER1_type 71 322 -19 7 1324 309 348 121 49 chr5 96960447 96960892 -55576367 + L2a LINE L2 2542 3018 -401 7 1324 248 308 244 34 chr5 96961091 96961328 -55575931 + L2a LINE L2 3134 3420 -6 7 1324 326 308 59 8 chr5 96961578 96961696 -55575563 + Tigger7 DNA MER2_type 346 469 -2022 7 1324 715 242 45 20 chr5 96961700 96961898 -55575361 + Tigger7 DNA MER2_type 2266 2468 -23 7 1324 396 123 0 0 chr5 96962815 96962888 -55574371 + (TCTG)n Simple_repeat Simple_repeat 4 76 0 7 1324 242 249 87 13 chr5 96963085 96963160 -55574099 - ID2 SINE ID -68 84 1 7 1324 288 0 0 0 chr5 96964061 96964093 -55573166 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1324 352 320 62 0 chr5 96964524 96964652 -55572607 - MER20 DNA MER1_type -49 170 35 7 1324 1233 55 7 0 chr5 96967352 96967497 -55569762 + B1_Mm SINE Alu 2 147 0 7 1324 238 253 35 35 chr5 96968142 96968228 -55569031 - MIR3 SINE MIR 0 208 123 7 1324 384 292 0 0 chr5 96968397 96968486 -55568773 + 5S rRNA rRNA 1 89 -32 7 1324 1604 38 38 0 chr5 96969069 96969253 -55568006 - B2_Mm1a SINE B2 -2 191 1 7 1324 235 85 21 21 chr5 96969284 96969332 -55567927 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 7 1324 522 0 0 0 chr5 96970660 96970718 -55566541 + (GA)n Simple_repeat Simple_repeat 1 58 0 7 1324 266 290 0 42 chr5 96970819 96970891 -55566368 + ID4_ SINE ID 1 69 -14 7 1324 520 278 9 9 chr5 96970940 96971056 -55566203 + PB1 SINE Alu 7 122 -5 7 1324 1169 246 105 26 chr5 96971139 96971490 -55565769 + MTE2a LTR MaLR 1 379 0 7 1324 2633 90 3 0 chr5 96971556 96971878 -55565381 - ORR1A2 LTR MaLR 0 327 5 7 1324 477 269 45 23 chr5 96971915 96972048 -55565211 - MTE2b LTR MaLR -234 145 10 7 1324 261 313 109 63 chr5 96973518 96973692 -55563567 - MER45C DNA Tip100 -101 852 671 7 1324 234 156 22 0 chr5 96974590 96974635 -55562624 - B4 SINE B4 -245 47 2 7 1324 477 0 0 0 chr5 96975613 96975666 -55561593 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 7 1324 223 307 11 33 chr5 96975829 96975920 -55561339 - MIR SINE MIR -99 163 75 7 1324 237 191 0 0 chr5 96976609 96976651 -55560608 - ID4 SINE ID -26 57 16 8 1324 182 129 0 31 chr5 96977314 96977346 -55559913 + L3 LINE CR1 3331 3361 -1128 8 1324 1101 146 95 21 chr5 96977813 96978071 -55559188 - Lx LINE L1 -4 6632 6331 8 1324 2216 114 0 0 chr5 96978081 96978387 -55558872 + Lx LINE L1 6012 6317 -337 8 1324 316 291 13 0 chr5 96978974 96979053 -55558206 - L1M6 LINE L1 -5805 691 612 8 1324 449 352 69 25 chr5 96979682 96979886 -55557373 - MER58A DNA MER1_type -8 216 4 8 1324 267 250 341 8 chr5 96979978 96980107 -55557152 + B3A SINE B2 2 173 -25 8 1324 231 36 0 0 chr5 96980113 96980141 -55557118 + (CA)n Simple_repeat Simple_repeat 2 29 0 8 1324 230 340 75 0 chr5 96981235 96981329 -55555930 + MIR SINE MIR 84 184 -78 8 1324 459 0 0 0 chr5 96981360 96981411 -55555848 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 8 1324 1209 70 0 0 chr5 96981411 96981554 -55555705 - B1_Mus2 SINE Alu -3 144 2 8 1324 243 132 38 56 chr5 96982421 96982581 -55554678 + (TA)n Simple_repeat Simple_repeat 1 157 0 8 1324 244 70 47 0 chr5 96982801 96982844 -55554415 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1324 630 250 191 0 chr5 96982852 96983020 -55554239 - B3 SINE B2 -11 205 6 8 1324 225 224 116 12 chr5 96983155 96983241 -55554018 - MLT1L LTR MaLR -18 592 498 8 1324 519 194 0 0 chr5 96984811 96984919 -55552340 + (TATATG)n Simple_repeat Simple_repeat 6 113 0 8 1324 1503 49 33 0 chr5 96985993 96986177 -55551082 - B2_Mm2 SINE B2 -4 191 2 8 1324 243 157 0 0 chr5 96989238 96989289 -55547970 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 8 1324 1014 281 31 12 chr5 96989473 96989729 -55547530 - B4 SINE B4 -28 264 4 8 1324 4805 146 30 34 chr5 96990044 96990975 -55546284 + L1Md_T LINE L1 279 1205 -5411 8 165 37187 32 1 0 chr5 96990981 96995395 -55541864 + L1Md_T LINE L1 1170 5586 -297 8 1325 8537 56 0 0 chr5 96995395 96996430 -55540829 + L1Md_T LINE L1 5587 6582 0 8 1325 255 262 33 0 chr5 96998756 96998817 -55538442 + MIR SINE MIR 79 141 -121 8 1325 476 72 14 0 chr5 96998937 96999006 -55538253 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 8 1325 274 23 23 23 chr5 97000893 97000937 -55536322 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 1 1325 1202 55 0 14 chr5 97000938 97001085 -55536174 - B1_Mm SINE Alu -2 145 1 2 1325 390 228 143 61 chr5 97001241 97001373 -55535886 + MIR SINE MIR 13 162 -100 3 1325 2301 115 3 0 chr5 97001373 97001695 -55535564 - ORR1A2 LTR MaLR -4 323 1 4 1325 390 228 143 61 chr5 97001695 97001758 -55535501 + MIR SINE MIR 163 224 -38 3 1325 716 204 79 21 chr5 97002205 97002395 -55534864 - MTD LTR MaLR 0 419 219 5 1325 223 182 23 0 chr5 97002593 97002637 -55534622 - PB1D9 SINE Alu -3 117 73 6 1325 455 206 0 6 chr5 97003087 97003243 -55534016 + (CA)n Simple_repeat Simple_repeat 2 156 0 7 1325 251 211 11 0 chr5 97003266 97003356 -55533903 + (CA)n Simple_repeat Simple_repeat 2 92 0 7 1325 378 0 0 0 chr5 97003381 97003423 -55533836 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1325 850 168 0 16 chr5 97003423 97003680 -55533579 + (CA)n Simple_repeat Simple_repeat 1 252 0 9 1325 204 254 18 0 chr5 97003941 97003996 -55533263 + GA-rich Low_complexity Low_complexity 2 57 0 1 1325 315 0 0 0 chr5 97004107 97004142 -55533117 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1325 198 0 0 0 chr5 97005392 97005414 -55531845 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1325 1278 197 93 19 chr5 97005469 97005779 -55531480 - ORR1D1 LTR MaLR 0 374 42 1 1325 472 298 38 7 chr5 97006431 97006647 -55530612 + MIRb SINE MIR 30 258 -10 1 1325 189 121 0 0 chr5 97007048 97007081 -55530178 + (G)n Simple_repeat Simple_repeat 1 33 0 1 1325 193 353 36 14 chr5 97007492 97007630 -55529629 - L2a LINE L2 -11 3415 3275 1 1325 312 256 0 0 chr5 97008329 97008415 -55528844 + CT-rich Low_complexity Low_complexity 2 87 0 1 1325 811 188 11 0 chr5 97008438 97008614 -55528645 + CT-rich Low_complexity Low_complexity 1 178 0 1 1325 250 57 0 28 chr5 97008614 97008650 -55528609 + (TTCC)n Simple_repeat Simple_repeat 2 36 0 1 1325 1187 141 43 0 chr5 97008650 97008835 -55528424 - B2_Mm2 SINE B2 0 195 3 1 1325 212 255 0 0 chr5 97008835 97008852 -55528407 + polypyrimidine Low_complexity Low_complexity 4 20 0 2 1325 674 62 10 0 chr5 97008965 97009061 -55528198 + (TC)n Simple_repeat Simple_repeat 2 98 0 2 1325 348 317 113 8 chr5 97009441 97009565 -55527694 + RSINE1 SINE B4 16 152 -13 2 1325 887 266 92 22 chr5 97010767 97011040 -55526219 - B4 SINE B4 0 292 1 2 1325 344 289 165 21 chr5 97011988 97012182 -55525077 + ID_B1 SINE B4 2 223 -1 2 1325 827 262 60 41 chr5 97012232 97012499 -55524760 + B4A SINE B4 1 272 -20 2 1325 551 74 12 0 chr5 97012518 97012599 -55524660 + (CA)n Simple_repeat Simple_repeat 2 83 0 2 1325 1235 198 17 100 chr5 97014008 97014206 -55523053 - MTD LTR MaLR -11 408 208 2 1325 447 19 0 0 chr5 97014206 97014258 -55523001 + (TTTC)n Simple_repeat Simple_repeat 2 53 0 2 1325 1235 198 17 100 chr5 97014258 97014285 -55522974 - MTD LTR MaLR -212 207 199 2 1325 2007 42 37 29 chr5 97014285 97014557 -55522702 - L1Md_F3 LINE L1 -14 6570 6297 2 1325 1235 198 17 100 chr5 97014557 97014679 -55522580 - MTD LTR MaLR -221 198 89 2 1325 450 336 44 36 chr5 97015894 97016119 -55521140 + LTR90A LTR LTR 14 240 -736 3 1325 267 281 37 0 chr5 97016655 97016737 -55520522 + LTR90A LTR LTR 827 911 -65 3 1325 595 163 16 0 chr5 97016813 97016936 -55520323 + CT-rich Low_complexity Low_complexity 3 127 0 3 1325 377 293 84 18 chr5 97018006 97018173 -55519086 + MLT1D LTR MaLR 308 485 -20 3 1325 197 337 92 0 chr5 97018238 97018336 -55518923 - MIRb SINE MIR -81 187 81 3 1325 253 0 0 51 chr5 97018568 97018607 -55518652 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 3 1325 1169 49 0 27 chr5 97018607 97018746 -55518513 - B1_Mm SINE Alu -6 141 5 3 1325 26 0 0 0 chr5 97019505 97019531 -55517728 + AT_rich Low_complexity Low_complexity 1 26 0 3 1325 1123 44 0 14 chr5 97019541 97019680 -55517579 - B1_Mm SINE Alu -10 137 1 3 1325 195 114 0 0 chr5 97020360 97020395 -55516864 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 3 1325 714 222 140 5 chr5 97020471 97020657 -55516602 - B3 SINE B2 -5 211 1 3 1325 598 321 94 33 chr5 97020662 97021244 -55516015 - L1ME5 LINE L1 -188 6006 5389 4 1325 219 36 0 0 chr5 97021284 97021312 -55515947 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 1325 231 230 95 0 chr5 97021409 97021483 -55515776 - ID4_ SINE ID 0 83 3 4 1325 222 37 0 0 chr5 97023147 97023174 -55514085 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1325 9038 16 0 0 chr5 97023197 97024346 -55512913 - L1Md_A LINE L1 0 6582 5434 4 1325 348 24 0 0 chr5 97025979 97026020 -55511239 + (CCA)n Simple_repeat Simple_repeat 1 41 0 4 1325 2766 188 100 13 chr5 97026021 97026572 -55510687 - Lx5 LINE L1 -216 6834 6236 4 1325 234 355 21 14 chr5 97027290 97027305 -55509954 + MIRb SINE MIR 82 95 -173 4 1325 619 260 76 72 chr5 97027305 97027595 -55509664 - B4 SINE B4 -1 291 1 4 1325 234 355 21 14 chr5 97027595 97027719 -55509540 + MIRb SINE MIR 96 221 -47 4 1325 267 31 0 0 chr5 97028540 97028572 -55508687 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1325 407 379 21 13 chr5 97029153 97029388 -55507871 - L4 LINE RTE -303 1726 1490 5 1325 240 35 0 0 chr5 97030120 97030149 -55507110 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 5 1325 1020 238 168 64 chr5 97031314 97031795 -55505464 - RMER15 LTR ERVL 0 575 45 5 1325 3105 45 3 0 chr5 97032466 97032876 -55504383 - L1Md_F2 LINE L1 0 6582 6203 5 1325 200 303 50 10 chr5 97033570 97033670 -55503589 - MIRb SINE MIR -93 175 72 5 1325 297 0 0 0 chr5 97034192 97034225 -55503034 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1325 231 103 0 0 chr5 97034416 97034455 -55502804 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 5 1325 4374 16 14 0 chr5 97034930 97035416 -55501843 - MT2_Mm LTR ERVL 0 493 1 5 1325 432 0 0 0 chr5 97037411 97037459 -55499800 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1325 2215 259 19 24 chr5 97038427 97038968 -55498291 + Lx6 LINE L1 6912 7449 -11 5 1325 441 0 0 0 chr5 97040052 97040101 -55497158 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1325 746 285 56 70 chr5 97040135 97040422 -55496837 - B4A SINE B4 -1 291 9 6 1325 511 301 58 6 chr5 97041016 97041190 -55496069 - MER74A LTR ERVL -371 187 5 6 1325 297 0 0 0 chr5 97041618 97041651 -55495608 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 6 1325 926 165 0 29 chr5 97041652 97041970 -55495289 + GA-rich Low_complexity Low_complexity 1 308 0 6 1325 560 133 19 0 chr5 97041986 97042091 -55495168 + GA-rich Low_complexity Low_complexity 1 107 0 6 1325 2853 231 33 28 chr5 97042342 97043015 -55494244 - Lx9 LINE L1 -373 7271 6596 6 1325 228 67 0 0 chr5 97043054 97043084 -55494175 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6 1325 443 186 0 10 chr5 97044628 97044726 -55492533 + (TA)n Simple_repeat Simple_repeat 2 98 0 6 1325 302 0 26 0 chr5 97045079 97045117 -55492142 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1325 933 152 124 0 chr5 97045479 97045656 -55491603 - B3 SINE B2 -17 199 1 6 1325 360 77 0 0 chr5 97046914 97046966 -55490293 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1325 235 122 0 39 chr5 97047002 97047053 -55490206 + C-rich Low_complexity Low_complexity 1 49 0 7 1325 506 227 102 16 chr5 97047801 97048057 -55489202 - MTEb LTR MaLR 0 379 3 7 1325 405 298 10 0 chr5 97048057 97048161 -55489098 - ID_B1 SINE B4 -29 195 91 7 1325 228 346 39 0 chr5 97048857 97048935 -55488324 + ID4_ SINE ID 3 83 0 7 1325 497 233 51 29 chr5 97050699 97050836 -55486423 - MLT1B LTR MaLR -2 388 249 7 1325 438 250 0 0 chr5 97050896 97050980 -55486279 - PB1D7 SINE Alu -19 101 18 7 1325 225 0 0 0 chr5 97052602 97052627 -55484632 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1325 923 291 34 44 chr5 97053268 97053563 -55483696 - B4 SINE B4 0 292 1 7 1325 692 306 42 8 chr5 97053653 97053916 -55483343 - B4A SINE B4 -18 274 3 7 1325 243 204 0 0 chr5 97055059 97055113 -55482146 + A-rich Low_complexity Low_complexity 1 54 0 8 1325 350 135 9 55 chr5 97056017 97056127 -55481132 + CT-rich Low_complexity Low_complexity 6 110 0 8 1325 1389 303 93 34 chr5 97057531 97058258 -55479001 - Lx8 LINE L1 -17 7456 6687 8 1325 234 0 0 0 chr5 97059205 97059231 -55478028 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1325 297 0 0 0 chr5 97059863 97059896 -55477363 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1325 24 53 0 0 chr5 97060025 97060063 -55477196 + AT_rich Low_complexity Low_complexity 1 38 0 8 1325 511 303 52 0 chr5 97060479 97060634 -55476625 - RSINE1 SINE B4 0 165 3 8 1325 414 196 189 1 chr5 97060877 97060992 -55476267 - B2_Mm2 SINE B2 -57 159 16 8 1325 432 0 0 0 chr5 97060992 97061040 -55476219 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1325 914 263 63 118 chr5 97062794 97063129 -55474130 - MTEa LTR MaLR -2 377 77 8 1325 840 197 133 25 chr5 97063129 97063332 -55473927 + URR1B DNA MER1_type 1 225 0 9 1325 914 263 63 118 chr5 97063332 97063393 -55473866 - MTEa LTR MaLR -303 76 3 8 1325 683 309 93 57 chr5 97063679 97064012 -55473247 - ORR1E LTR MaLR 0 359 15 9 1325 967 272 50 4 chr5 97065440 97065698 -55471561 - MTE2b LTR MaLR -109 270 1 9 1325 692 277 28 24 chr5 97066565 97066776 -55470483 + B3 SINE B2 5 216 0 9 1325 995 269 52 49 chr5 97067018 97067362 -55469897 - ORR1E LTR MaLR -9 350 6 9 1325 1581 47 0 0 chr5 97069571 97069761 -55467498 + L1_Mus1 LINE L1 6317 6506 -61 9 1325 656 168 29 91 chr5 97069762 97069915 -55467344 - Lx9 LINE L1 -25 7619 7477 9 1325 288 0 0 0 chr5 97069915 97069947 -55467312 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1325 656 168 29 91 chr5 97069947 97070003 -55467256 - Lx9 LINE L1 -168 7476 7423 9 1325 235 180 20 0 chr5 97072917 97072967 -55464292 - tRNA-Ala-GCG tRNA tRNA -16 59 9 9 1325 347 266 0 12 chr5 97077335 97077415 -55459844 - ID4_ SINE ID -1 82 4 9 1325 274 309 73 0 chr5 97077953 97078063 -55459196 + MER5B DNA MER1_type 3 120 -58 1 1325 1249 269 94 111 chr5 97078107 97079140 -55458119 - L1MB7 LINE L1 -43 6141 5120 1 1325 228 135 0 0 chr5 97080478 97080515 -55456744 + (ATTG)n Simple_repeat Simple_repeat 3 39 0 1 1325 254 293 13 0 chr5 97081001 97081076 -55456183 + (CA)n Simple_repeat Simple_repeat 1 76 0 1 1325 507 269 57 80 chr5 97081794 97082057 -55455202 - L1ME1 LINE L1 -36 6143 5887 1 1325 288 0 0 0 chr5 97082880 97082912 -55454347 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1325 331 281 67 10 chr5 97082963 97083067 -55454192 - RSINE1 SINE B4 -54 111 2 1 1325 21 0 0 0 chr5 97083170 97083191 -55454068 + AT_rich Low_complexity Low_complexity 1 21 0 1 1325 199 301 168 0 chr5 97083575 97083699 -55453560 - MIRb SINE MIR -90 178 21 1 1325 539 242 6 0 chr5 97084102 97084280 -55452979 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1325 463 176 8 8 chr5 97085343 97085469 -55451790 + CT-rich Low_complexity Low_complexity 1 126 0 1 1325 438 167 0 0 chr5 97085475 97085559 -55451700 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 1325 183 383 18 12 chr5 97088330 97088499 -55448760 - MIRb SINE MIR -58 210 41 1 1325 464 300 155 35 chr5 97091101 97091443 -55445816 - L1MA9 LINE L1 -129 6183 5801 1 1325 310 270 60 17 chr5 97091802 97091919 -55445340 - MER2 DNA MER2_type -201 144 23 1 1325 441 311 146 29 chr5 97091954 97092924 -55444335 - L1M3c LINE L1 -4180 2669 1509 1 1325 1062 173 102 22 chr5 97093116 97093205 -55444054 - ORR1D1 LTR MaLR 0 374 268 1 1325 1502 166 78 197 chr5 97093205 97093641 -55443618 + ORR1C2 LTR MaLR 1 384 0 1 1325 1062 173 102 22 chr5 97093641 97093776 -55443483 - ORR1D1 LTR MaLR -107 267 132 1 1325 545 319 142 24 chr5 97093993 97094240 -55443019 - L1M3c LINE L1 -5861 918 643 1 1325 203 365 9 46 chr5 97094443 97094552 -55442707 - MER5A DNA MER1_type -84 105 1 1 1325 288 91 0 0 chr5 97095782 97095826 -55441433 + (TCC)n Simple_repeat Simple_repeat 2 45 0 1 1325 26 0 0 0 chr5 97096917 97096943 -55440316 + AT_rich Low_complexity Low_complexity 1 26 0 1 1325 535 252 8 63 chr5 97097020 97097147 -55440112 - RSINE1 SINE B4 -43 122 3 1 1325 681 271 23 29 chr5 97097406 97097581 -55439678 - B4A SINE B4 -87 205 32 1 1325 359 280 164 9 chr5 97097600 97097844 -55439415 - L1MC4a LINE L1 -334 7661 7272 1 1325 180 244 24 0 chr5 97097866 97097907 -55439352 + L3 LINE CR1 4431 4472 -17 1 1325 720 141 59 0 chr5 97098387 97098522 -55438737 + URR1B DNA MER1_type 83 225 0 1 1325 366 233 89 51 chr5 97098522 97098537 -55438722 - CYRA11_Mm Unknown Y-chromosome -296 273 158 1 1325 30 0 0 0 chr5 97098980 97099010 -55438249 + AT_rich Low_complexity Low_complexity 1 30 0 1 1325 354 39 0 0 chr5 97099183 97099234 -55438025 + B1_Mur4 SINE Alu 100 150 0 1 1325 258 247 0 0 chr5 97100645 97100722 -55436537 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1325 2413 60 119 11 chr5 97101166 97101518 -55435741 - RLTR10 LTR ERVK 0 390 1 1 1325 363 211 40 0 chr5 97104050 97104126 -55433133 + ID_B1 SINE B4 137 215 -9 1 1325 257 277 158 0 chr5 97105706 97105807 -55431452 - PB1D9 SINE Alu -2 118 2 1 1325 205 297 0 59 chr5 97106801 97106869 -55430390 - L2c LINE L2 -235 3152 3089 1 1325 483 294 112 0 chr5 97107103 97107263 -55429996 - RMER30 DNA MER1_type -6 196 19 1 1325 421 263 74 15 chr5 97108478 97108613 -55428646 - MER5A DNA MER1_type -7 182 40 1 1325 555 297 34 93 chr5 97108613 97109055 -55428204 + L1MB1 LINE L1 5714 6129 -39 1 1325 192 163 0 0 chr5 97112635 97112678 -55424581 + CT-rich Low_complexity Low_complexity 4 46 0 1 1325 515 149 60 0 chr5 97112702 97112870 -55424389 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 1 1325 752 264 86 23 chr5 97112935 97113191 -55424068 - B4A SINE B4 -12 280 9 1 1325 546 16 0 0 chr5 97113678 97113741 -55423518 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 1325 3983 87 17 6 chr5 97116045 97116588 -55420671 + L1_Mus4 LINE L1 6088 6636 0 1 1325 279 0 0 0 chr5 97117585 97117616 -55419643 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1325 21 0 0 0 chr5 97119113 97119134 -55418125 + AT_rich Low_complexity Low_complexity 1 21 0 1 1325 801 153 153 0 chr5 97119265 97119428 -55417831 - B2_Mm2 SINE B2 -7 188 1 1 1325 226 170 64 0 chr5 97119474 97119521 -55417738 + B1F SINE Alu 85 134 -15 1 1325 342 0 0 0 chr5 97119774 97119812 -55417447 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1325 2527 163 27 45 chr5 97119814 97120329 -55416930 - RMER20A LTR ERVK -7 509 4 1 1325 885 250 29 0 chr5 97122177 97122381 -55414878 + B3 SINE B2 1 210 -6 1 1325 314 23 0 23 chr5 97123380 97123424 -55413835 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1326 504 314 120 34 chr5 97124367 97124634 -55412625 + B4A SINE B4 2 291 -1 1 1326 661 268 18 12 chr5 97126166 97126332 -55410927 - ID_B1 SINE B4 -57 167 1 1 1326 22 0 0 0 chr5 97126775 97126797 -55410462 + AT_rich Low_complexity Low_complexity 1 22 0 1 1326 712 206 14 0 chr5 97126920 97127066 -55410193 + B1_Mus1 SINE Alu 1 148 0 1 1326 753 283 97 15 chr5 97127189 97127458 -55409801 - B4 SINE B4 0 292 2 1 1326 23 0 0 0 chr5 97129443 97129466 -55407793 + AT_rich Low_complexity Low_complexity 1 23 0 1 1326 210 150 0 0 chr5 97129846 97129886 -55407373 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 1326 300 333 82 20 chr5 97131446 97131642 -55405617 - L2a LINE L2 -12 3414 3207 1 1326 257 327 81 31 chr5 97132671 97132832 -55404427 - MER5A DNA MER1_type -4 185 17 1 1326 4282 164 86 54 chr5 97134287 97135161 -55402098 - RMER19B LTR ERVK 0 902 1 1 1326 564 248 15 8 chr5 97135478 97135612 -55401647 + Lx8 LINE L1 7012 7146 -327 1 1326 201 74 0 0 chr5 97135753 97135780 -55401479 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1326 22 56 0 0 chr5 97136904 97136940 -55400319 + AT_rich Low_complexity Low_complexity 1 36 0 1 1326 910 49 8 0 chr5 97136986 97137108 -55400151 - B1_Mus1 SINE Alu -1 147 25 1 1326 533 88 0 12 chr5 97139295 97139376 -55397883 + (GGA)n Simple_repeat Simple_repeat 3 82 0 1 1326 864 55 0 0 chr5 97139376 97139486 -55397773 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 1 1326 364 341 22 0 chr5 97139585 97139723 -55397536 - ORR1E LTR MaLR -218 141 1 1 1326 285 317 50 25 chr5 97140548 97140737 -55396522 - LTR40c LTR ERVL -164 298 105 1 1326 369 0 0 0 chr5 97143629 97143670 -55393589 + (TA)n Simple_repeat Simple_repeat 1 41 0 1 1326 288 292 0 0 chr5 97144015 97144087 -55393172 + ID4_ SINE ID 4 75 -8 1 1326 257 298 86 31 chr5 97148996 97149124 -55388135 + MER5B DNA MER1_type 1 135 -43 1 1326 614 316 29 81 chr5 97149131 97149353 -55387906 + B4A SINE B4 2 222 -70 1 1326 1012 231 19 0 chr5 97149353 97149561 -55387698 + B3 SINE B2 5 216 0 1 1326 614 316 29 81 chr5 97149561 97149645 -55387614 + B4A SINE B4 223 292 0 1 1326 279 278 0 53 chr5 97149986 97150081 -55387178 - MLT1A0 LTR MaLR -257 108 19 1 1326 1321 261 69 11 chr5 97150100 97150479 -55386780 + MTD LTR MaLR 19 419 0 1 1326 313 58 39 0 chr5 97150530 97150582 -55386677 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1326 659 298 81 78 chr5 97150886 97151269 -55385990 - MLT1B LTR MaLR -3 387 4 1 1326 228 67 0 0 chr5 97151886 97151916 -55385343 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1326 480 299 34 17 chr5 97152572 97152749 -55384510 + L1ME3 LINE L1 5622 5801 -378 1 1326 393 75 0 0 chr5 97152776 97152829 -55384430 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1326 725 333 30 19 chr5 97152830 97153099 -55384160 - B4A SINE B4 -19 273 2 1 1326 225 289 106 0 chr5 97153306 97153410 -55383849 + L1ME3 LINE L1 6025 6139 -23 1 1326 540 302 143 16 chr5 97153776 97154028 -55383231 - B4A SINE B4 -8 284 1 1 1326 363 270 65 33 chr5 97154485 97154577 -55382682 - ID4 SINE ID -52 100 6 1 1326 430 221 0 0 chr5 97154598 97154684 -55382575 - ID_B1 SINE B4 -21 203 118 1 1326 22 0 0 0 chr5 97154856 97154878 -55382381 + AT_rich Low_complexity Low_complexity 1 22 0 1 1326 180 0 0 0 chr5 97156293 97156313 -55380946 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1326 254 182 0 35 chr5 97156338 97156395 -55380864 - B2_Mm2 SINE B2 -94 101 47 1 1326 1001 113 113 0 chr5 97156460 97156619 -55380640 - B2_Mm1t SINE B2 -14 179 3 1 1326 718 81 18 0 chr5 97157098 97157209 -55380050 + (GGGA)n Simple_repeat Simple_repeat 4 116 0 1 1326 528 97 32 0 chr5 97158009 97158102 -55379157 + (TC)n Simple_repeat Simple_repeat 1 96 0 1 1326 261 0 0 0 chr5 97158106 97158135 -55379124 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1326 335 217 75 11 chr5 97158197 97158290 -55378969 + MIRc SINE MIR 56 154 -114 1 1326 606 279 218 5 chr5 97158470 97158690 -55378569 + B4 SINE B4 1 267 -25 1 1326 399 41 0 0 chr5 97158693 97158742 -55378517 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1326 351 337 0 0 chr5 97160125 97160223 -55377036 + PB1 SINE Alu 25 122 -5 1 1326 399 309 7 7 chr5 97160225 97160362 -55376897 + (CA)n Simple_repeat Simple_repeat 1 137 0 1 1326 393 317 84 30 chr5 97161124 97161361 -55375898 - MLT1J LTR MaLR -243 269 20 1 1326 640 358 66 8 chr5 97161677 97161933 -55375326 + B4A SINE B4 1 271 -21 1 1326 480 35 0 0 chr5 97161967 97162025 -55375234 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1326 381 210 49 0 chr5 97162198 97162279 -55374980 + PB1D7 SINE Alu 30 114 -6 1 1326 190 339 0 0 chr5 97162287 97162349 -55374910 + L2 LINE L2 1991 2052 -1367 2 1326 343 146 0 0 chr5 97163042 97163097 -55374162 - B3 SINE B2 -161 55 1 2 1326 243 0 0 0 chr5 97163199 97163226 -55374033 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1326 338 0 0 23 chr5 97163533 97163576 -55373683 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 2 1326 918 57 0 0 chr5 97163608 97163731 -55373528 - B2_Mm2 SINE B2 -71 124 2 2 1326 303 93 0 0 chr5 97164424 97164467 -55372792 + (TGG)n Simple_repeat Simple_repeat 2 44 0 2 1326 264 30 0 0 chr5 97167388 97167421 -55369838 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 2 1326 785 134 5 48 chr5 97170660 97170848 -55366411 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1326 255 206 25 76 chr5 97170848 97170927 -55366332 - B3A SINE B2 -16 182 108 2 1326 744 241 105 0 chr5 97171118 97171309 -55365950 + B3 SINE B2 5 215 -1 2 1326 1975 250 77 2 chr5 97172307 97172804 -55364455 - Lx6 LINE L1 -15 7445 6912 2 1326 456 290 24 24 chr5 97172938 97173065 -55364194 + RSINE1 SINE B4 39 165 0 2 1326 238 250 0 0 chr5 97173076 97173136 -55364123 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1326 1119 57 43 0 chr5 97173319 97173459 -55363800 + B1_Mm SINE Alu 2 147 0 2 1326 404 36 18 0 chr5 97173460 97173507 -55363752 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 2 1326 726 44 0 0 chr5 97173507 97173597 -55363662 + (GGGAA)n Simple_repeat Simple_repeat 3 92 0 2 1326 404 36 18 0 chr5 97173597 97173605 -55363654 + (GAAA)n Simple_repeat Simple_repeat 1 8 0 2 1326 333 0 0 0 chr5 97174841 97174878 -55362381 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1326 306 274 40 8 chr5 97174911 97175036 -55362223 - L1ME1 LINE L1 -138 6041 5913 2 1326 796 178 14 14 chr5 97177801 97177949 -55359310 - B1_Mur4 SINE Alu 0 150 3 2 1326 1033 171 55 125 chr5 97179233 97179593 -55357666 - MTC-int LTR MaLR -827 431 6 2 1326 658 156 325 0 chr5 97179776 97179930 -55357329 + B3 SINE B2 3 206 -10 2 1326 27 0 0 0 chr5 97180255 97180282 -55356977 + AT_rich Low_complexity Low_complexity 1 27 0 2 1326 186 71 0 0 chr5 97180287 97180315 -55356944 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2 1326 851 93 0 0 chr5 97180315 97180433 -55356826 - B1_Mus1 SINE Alu -13 135 18 2 1326 865 264 62 47 chr5 97182910 97183184 -55354075 + B4 SINE B4 5 282 -10 2 1326 189 0 0 0 chr5 97183191 97183212 -55354047 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1326 387 0 0 0 chr5 97183212 97183254 -55354005 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1326 556 301 37 11 chr5 97183359 97183547 -55353712 + B3A SINE B2 1 193 -5 2 1326 203 271 0 0 chr5 97184623 97184682 -55352577 + T-rich Low_complexity Low_complexity 1 59 0 2 1326 681 93 0 53 chr5 97184869 97184983 -55352276 - B1_Mur3 SINE Alu -2 147 40 2 1326 292 224 0 76 chr5 97184908 97185000 -55352259 - MT2B LTR ERVL -337 264 180 2 1326 1108 160 97 0 chr5 97185480 97185686 -55351573 + URR1A DNA MER1_type 1 226 0 2 1326 2548 122 66 2 chr5 97185941 97186337 -55350922 - MTC LTR MaLR 0 421 1 2 1326 315 0 0 0 chr5 97186677 97186712 -55350547 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1326 381 278 68 83 chr5 97187393 97187585 -55349674 + MER20 DNA MER1_type 29 217 -2 2 1326 1175 68 0 0 chr5 97187814 97187960 -55349299 + B1_Mus2 SINE Alu 2 147 0 2 1326 225 94 0 0 chr5 97187962 97187994 -55349265 + (GGAGAA)n Simple_repeat Simple_repeat 6 37 0 2 1326 195 42 0 0 chr5 97189343 97189367 -55347892 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1326 441 305 25 50 chr5 97189726 97189885 -55347374 + B4A SINE B4 4 158 -134 2 1326 230 290 0 0 chr5 97189953 97190022 -55347237 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1326 25 0 0 0 chr5 97190102 97190127 -55347132 + AT_rich Low_complexity Low_complexity 1 25 0 2 1326 412 241 20 54 chr5 97190306 97190455 -55346804 + Helitron2Na_Mam RC Helitron? 180 323 -1 2 1326 261 98 0 0 chr5 97191359 97191400 -55345859 + (TGGA)n Simple_repeat Simple_repeat 3 43 0 2 1326 513 282 72 38 chr5 97193129 97193391 -55343868 + B4A SINE B4 4 274 -18 2 1326 200 311 16 0 chr5 97193405 97193466 -55343793 + (CATA)n Simple_repeat Simple_repeat 1 62 0 2 1326 1246 119 93 10 chr5 97194237 97194441 -55342818 - URR1B DNA MER1_type 0 225 5 2 1326 283 81 0 98 chr5 97194807 97194889 -55342370 + C-rich Low_complexity Low_complexity 5 78 0 2 1326 313 70 0 0 chr5 97195557 97195600 -55341659 + RSINE1 SINE B4 85 127 -38 2 1326 680 89 10 0 chr5 97195614 97195715 -55341544 + (CA)n Simple_repeat Simple_repeat 2 103 0 2 1326 206 194 16 0 chr5 97196201 97196263 -55340996 + CT-rich Low_complexity Low_complexity 2 64 0 2 1326 189 74 0 0 chr5 97196265 97196292 -55340967 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 1326 741 274 73 26 chr5 97196326 97196558 -55340701 - B4A SINE B4 0 292 50 2 1326 369 0 0 0 chr5 97196594 97196635 -55340624 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1326 2339 106 83 35 chr5 97196636 97197067 -55340192 - RLTR20B2 LTR ERVK -108 452 1 2 1326 1450 290 75 57 chr5 97201694 97202146 -55335113 - MER82 DNA MER2_type -1 652 191 2 1326 1177 62 0 0 chr5 97202146 97202291 -55334968 + B1_Mus1 SINE Alu 2 146 -2 2 1326 1450 290 75 57 chr5 97202291 97202475 -55334784 - MER82 DNA MER2_type -463 190 4 2 1326 1036 196 40 0 chr5 97202485 97202684 -55334575 + B3 SINE B2 5 211 -5 2 1326 1146 276 85 45 chr5 97203589 97204105 -55333154 - L1ME1 LINE L1 -79 6100 5564 2 1326 261 304 194 9 chr5 97204178 97204394 -55332865 - L2 LINE L2 -2379 1040 785 2 1326 404 259 50 2 chr5 97204668 97204810 -55332449 - B1F SINE Alu -1 147 1 2 1326 386 38 0 19 chr5 97205213 97205266 -55331993 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1326 228 330 102 0 chr5 97205413 97205501 -55331758 + PB1D10 SINE Alu 14 110 -7 2 1326 23 0 0 0 chr5 97206258 97206281 -55330978 + AT_rich Low_complexity Low_complexity 1 23 0 2 1326 574 178 126 16 chr5 97207622 97207775 -55329484 + B3A SINE B2 1 157 -59 2 1326 344 77 19 0 chr5 97207778 97207830 -55329429 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1326 761 245 123 8 chr5 97207836 97208087 -55329172 + B4A SINE B4 8 287 -5 2 1326 490 42 14 27 chr5 97208119 97208193 -55329066 + (TCTA)n Simple_repeat Simple_repeat 3 75 0 2 1326 235 186 52 0 chr5 97208193 97208290 -55328969 + (TA)n Simple_repeat Simple_repeat 2 103 0 2 1326 545 272 100 64 chr5 97208290 97208729 -55328530 + Charlie1 DNA MER1_type 2327 2781 0 2 1326 180 77 0 0 chr5 97211545 97211571 -55325688 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 2 1326 274 309 31 0 chr5 97212140 97212237 -55325022 + L2b LINE L2 3276 3375 0 2 1326 22 0 0 0 chr5 97213837 97213859 -55323400 + AT_rich Low_complexity Low_complexity 1 22 0 2 1326 21 0 0 0 chr5 97214522 97214543 -55322716 + AT_rich Low_complexity Low_complexity 1 21 0 2 1326 204 67 0 0 chr5 97215311 97215341 -55321918 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1326 242 306 209 13 chr5 97215898 97216097 -55321162 - MER63B DNA AcHobo -11 425 179 2 1326 1453 75 0 5 chr5 97216097 97216286 -55320973 - B2_Mm2 SINE B2 -6 189 2 2 1326 242 306 209 13 chr5 97216286 97216321 -55320938 - MER63B DNA AcHobo -258 178 145 2 1326 232 138 227 103 chr5 97216474 97216571 -55320688 - Lx8 LINE L1 -6 7467 7359 2 1326 1198 330 26 5 chr5 97216635 97217052 -55320207 - Lx8 LINE L1 -241 7232 6807 2 1326 1926 157 47 0 chr5 97217061 97217405 -55319854 + ORR1D1 LTR MaLR 15 374 0 2 1326 507 278 128 64 chr5 97217456 97217532 -55319727 - Lx8 LINE L1 -725 6748 6657 2 1326 1254 184 116 24 chr5 97217532 97217861 -55319398 - RLTR10D LTR ERVK 0 359 1 2 1326 507 278 128 64 chr5 97217861 97217972 -55319287 - Lx8 LINE L1 -817 6656 6549 2 1326 1077 88 0 0 chr5 97218077 97218236 -55319023 + (GAAA)n Simple_repeat Simple_repeat 4 162 0 2 1326 1166 289 57 16 chr5 97218241 97218610 -55318649 + Lx8 LINE L1 6157 6540 -933 2 1326 316 376 17 0 chr5 97218613 97218730 -55318529 - PB1 SINE Alu -7 120 2 2 1326 679 265 0 29 chr5 97218805 97218980 -55318279 - MTEa-int LTR MaLR -232 1348 1179 2 1326 536 236 86 0 chr5 97218993 97219133 -55318126 - MTEa-int LTR MaLR -1422 158 7 2 1326 558 285 262 36 chr5 97219138 97219447 -55317812 - MTEa LTR MaLR 0 379 1 2 1326 2133 255 75 32 chr5 97219480 97220197 -55317062 - L1MC1 LINE L1 -52 6281 5534 2 1326 234 229 0 0 chr5 97220282 97220330 -55316929 + RSINE1 SINE B4 16 63 -102 2 1326 315 0 0 0 chr5 97220353 97220388 -55316871 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 1326 359 337 18 0 chr5 97220412 97220641 -55316618 + (CA)n Simple_repeat Simple_repeat 1 233 0 2 1326 385 291 0 7 chr5 97220898 97221033 -55316226 - HAL1-2a_MD LINE L1 -532 2492 2359 2 1326 1332 230 72 41 chr5 97221454 97221844 -55315415 - MTD LTR MaLR -12 407 6 2 1326 181 98 49 0 chr5 97222222 97222263 -55314996 + (TGGGGG)n Simple_repeat Simple_repeat 2 44 0 2 1326 232 239 14 29 chr5 97224070 97224139 -55313120 - MTEa LTR MaLR -24 355 288 2 1326 1127 45 0 0 chr5 97224590 97224722 -55312537 + B1_Mus1 SINE Alu 5 136 -12 2 1326 225 0 0 0 chr5 97224740 97224765 -55312494 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2 1326 833 10 0 19 chr5 97225183 97225274 -55311985 + (TTC)n Simple_repeat Simple_repeat 1 90 0 2 1326 1140 124 0 0 chr5 97225274 97225452 -55311807 + (TCC)n Simple_repeat Simple_repeat 2 179 0 2 1326 833 10 0 19 chr5 97225452 97225463 -55311796 + (TTC)n Simple_repeat Simple_repeat 2 12 0 2 1326 220 174 43 21 chr5 97225574 97225621 -55311638 - PB1 SINE Alu -59 68 21 2 1326 212 279 66 0 chr5 97225579 97225640 -55311619 - ID_B1 SINE B4 -81 143 79 2 1326 822 93 17 8 chr5 97225856 97225975 -55311284 + PB1D9 SINE Alu 1 120 0 2 1326 252 321 15 0 chr5 97226621 97226712 -55310547 + B1F2 SINE Alu 4 98 -51 3 1326 408 292 44 0 chr5 97226785 97226922 -55310337 + B3A SINE B2 45 187 -11 3 1326 334 314 0 25 chr5 97227181 97227302 -55309957 + B4 SINE B4 174 291 -1 3 1326 209 211 53 0 chr5 97227319 97227376 -55309883 + (CATA)n Simple_repeat Simple_repeat 1 60 0 3 1326 200 132 26 0 chr5 97227355 97227393 -55309866 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1326 398 276 64 104 chr5 97228623 97228825 -55308434 + ID_B1 SINE B4 4 197 -27 3 1326 360 140 32 0 chr5 97228845 97228938 -55308321 + (CA)n Simple_repeat Simple_repeat 2 97 0 3 1326 363 281 101 14 chr5 97229048 97229196 -55308063 + L1MB2 LINE L1 5764 5924 -247 3 1326 334 286 9 0 chr5 97229261 97229366 -55307893 + L1MB2 LINE L1 6024 6129 -42 3 1326 288 0 0 0 chr5 97229480 97229512 -55307747 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1326 846 18 27 0 chr5 97230021 97230133 -55307126 + (TC)n Simple_repeat Simple_repeat 1 115 0 3 1326 429 314 7 0 chr5 97230460 97230600 -55306659 - B4A SINE B4 -150 142 2 3 1326 276 255 49 39 chr5 97230659 97230753 -55306506 - B3A SINE B2 -58 158 65 3 1326 533 263 124 0 chr5 97230821 97230958 -55306301 + B3 SINE B2 25 178 -38 3 1326 626 85 0 11 chr5 97231965 97232060 -55305199 + (GGGAGA)n Simple_repeat Simple_repeat 1 94 0 3 1326 373 279 53 23 chr5 97232762 97232894 -55304365 - B3A SINE B2 0 198 63 3 1326 919 254 14 0 chr5 97232948 97233161 -55304098 + B3 SINE B2 1 216 0 3 1326 657 73 0 0 chr5 97233170 97233266 -55303993 + (TG)n Simple_repeat Simple_repeat 2 97 0 3 1326 773 277 61 36 chr5 97233370 97233647 -55303612 - MER21B LTR ERV1 -578 285 2 3 1326 292 240 13 26 chr5 97233885 97233962 -55303297 + ID4 SINE ID 6 81 -2 3 1326 255 261 33 22 chr5 97233962 97233975 -55303284 + ID_B1 SINE B4 6 96 -128 3 1326 844 226 113 13 chr5 97234804 97235100 -55302159 - MTD LTR MaLR -14 365 52 3 1326 321 303 23 8 chr5 97235102 97235235 -55302024 - MLT1C LTR MaLR -301 166 32 3 1326 224 59 29 0 chr5 97235998 97236032 -55301227 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 3 1326 1139 50 0 7 chr5 97236032 97236172 -55301087 - B1_Mus1 SINE Alu -9 139 1 3 1326 1203 75 0 0 chr5 97236559 97236706 -55300553 + B1_Mus1 SINE Alu 2 148 0 3 1326 272 346 58 0 chr5 97236959 97237115 -55300144 - MER5A DNA MER1_type -24 165 1 3 1326 635 244 52 13 chr5 97237326 97237480 -55299779 - B3A SINE B2 -38 160 1 3 1326 241 288 25 12 chr5 97237727 97237808 -55299451 + ID4 SINE ID 2 83 0 3 1326 355 148 0 32 chr5 97239670 97239733 -55297526 + B3 SINE B2 2 62 -154 3 1326 1348 56 84 6 chr5 97240607 97240624 -55296635 - B2_Mm1t SINE B2 0 193 177 3 1326 423 0 0 0 chr5 97240624 97240671 -55296588 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 3 1326 1348 56 84 6 chr5 97240671 97240832 -55296427 - B2_Mm1t SINE B2 -17 176 2 3 1326 295 269 37 0 chr5 97240832 97240940 -55296319 - L1ME3B LINE L1 -353 5887 5776 3 1326 323 23 0 22 chr5 97241665 97241710 -55295549 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 1326 1048 132 101 0 chr5 97242192 97242381 -55294878 + URR1A DNA MER1_type 19 226 0 3 1326 874 264 37 9 chr5 97242454 97242672 -55294587 - ID_B1 SINE B4 0 224 1 3 1326 392 301 16 47 chr5 97242676 97242805 -55294454 + MER20 DNA MER1_type 57 181 -38 3 1326 346 269 28 37 chr5 97243534 97243642 -55293617 - PB1 SINE Alu -6 121 15 3 1326 846 179 179 0 chr5 97243673 97243863 -55293396 + URR1B DNA MER1_type 2 225 0 3 1326 256 356 0 0 chr5 97243978 97244065 -55293194 + BC1_Mm scRNA scRNA 6 92 -60 3 1326 266 219 16 0 chr5 97245028 97245092 -55292167 - L1MA5 LINE L1 -23 6277 6213 3 1326 182 37 37 0 chr5 97246018 97246045 -55291214 + (TTC)n Simple_repeat Simple_repeat 3 30 0 3 1326 4905 58 2 0 chr5 97246045 97246649 -55290610 - L1Md_F2 LINE L1 -12 6570 5966 3 1326 495 309 78 65 chr5 97246791 97247178 -55290081 - MLT2C1 LTR ERVL -5 392 1 3 1326 251 85 0 21 chr5 97247738 97247786 -55289473 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1326 308 227 107 0 chr5 97247792 97247867 -55289392 - PB1D10 SINE Alu -16 101 19 3 1326 431 90 15 0 chr5 97248022 97248089 -55289170 - RMER17C LTR ERVK -342 68 1 3 1326 567 274 6 43 chr5 97248231 97248395 -55288864 - RLTR20D LTR ERVK -5 573 416 3 1326 900 246 59 66 chr5 97248375 97248662 -55288597 - RLTR20D LTR ERVK -281 287 3 3 1326 253 179 0 67 chr5 97249626 97249686 -55287573 - IAPEY3-int LTR ERVK -4153 3527 3472 3 1326 275 359 70 20 chr5 97250014 97250213 -55287046 - MER21B LTR ERV1 -264 599 391 3 1326 259 225 0 101 chr5 97250794 97250883 -55286376 - LTR50 LTR ERVL 0 795 716 3 1326 1160 48 0 14 chr5 97251292 97251440 -55285819 + B1_Mus1 SINE Alu 1 146 -2 3 1326 249 57 0 0 chr5 97251448 97251483 -55285776 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1326 491 305 7 7 chr5 97251535 97251687 -55285572 + RSINE1 SINE B4 2 153 -12 3 1326 828 254 19 5 chr5 97252718 97252928 -55284331 + B3 SINE B2 4 216 0 3 1326 206 211 0 34 chr5 97253042 97253101 -55284158 + (TATAG)n Simple_repeat Simple_repeat 2 58 0 3 1326 280 294 62 23 chr5 97253384 97253513 -55283746 - MLT1J LTR MaLR -251 261 128 3 1326 314 384 31 12 chr5 97254508 97254596 -55282663 + RSINE1 SINE B4 2 92 -73 3 1326 338 0 24 0 chr5 97254596 97254638 -55282621 + (GA)n Simple_repeat Simple_repeat 1 43 0 3 1326 314 384 31 12 chr5 97254638 97254710 -55282549 + RSINE1 SINE B4 93 164 -1 3 1326 395 229 271 0 chr5 97254756 97254926 -55282333 + B3 SINE B2 1 216 0 3 1327 523 258 116 17 chr5 97255446 97255679 -55281580 - L1MC2 LINE L1 -206 6138 5883 3 1327 21 36 0 0 chr5 97256236 97256264 -55280995 + AT_rich Low_complexity Low_complexity 1 28 0 3 1327 623 250 53 26 chr5 97256294 97256483 -55280776 - RLTR42-int LTR ERVK -4140 1382 1189 3 1327 1353 279 104 21 chr5 97256528 97257151 -55280108 - L1MC2 LINE L1 -476 5868 5193 3 1327 390 177 143 20 chr5 97258545 97258643 -55278616 + PB1D9 SINE Alu 11 120 0 3 1327 584 236 0 0 chr5 97258843 97258953 -55278306 + RSINE1 SINE B4 15 124 -41 3 1327 321 89 0 0 chr5 97258957 97259002 -55278257 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1327 540 0 0 0 chr5 97259004 97259064 -55278195 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 1327 201 147 0 0 chr5 97260112 97260146 -55277113 + (TCTCTG)n Simple_repeat Simple_repeat 5 38 0 3 1327 233 349 12 0 chr5 97260614 97260700 -55276559 - MIRb SINE MIR -20 248 162 3 1327 334 226 30 3 chr5 97260700 97260775 -55276484 - RLTR20A2 LTR ERVK 0 551 460 3 1327 378 0 0 0 chr5 97260822 97260864 -55276395 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1327 351 119 0 0 chr5 97260864 97260923 -55276336 - RLTR20A2 LTR ERVK -171 407 349 3 1327 2909 56 2 15 chr5 97260926 97261326 -55275933 - MTB LTR MaLR -5 395 1 3 1327 1949 146 42 0 chr5 97261334 97261664 -55275595 - RLTR20A2 LTR ERVK -234 344 1 3 1327 300 317 113 21 chr5 97261752 97261894 -55275365 - MER92A LTR ERV1 -255 157 3 3 1327 1167 51 0 0 chr5 97262065 97262203 -55275056 + B1_Mus1 SINE Alu 2 139 -9 3 1327 1444 202 81 26 chr5 97262603 97262949 -55274310 - ORR1D2 LTR MaLR -5 365 1 3 1327 4948 52 0 3 chr5 97264272 97264873 -55272386 - L1Md_F2 LINE L1 0 6582 5984 3 1327 191 324 72 31 chr5 97265007 97265230 -55272029 + L2a LINE L2 2919 3150 -225 3 1327 273 339 195 25 chr5 97265715 97265915 -55271344 + L2a LINE L2 3184 3417 -9 3 1327 210 118 0 0 chr5 97266368 97266402 -55270857 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1327 461 290 193 21 chr5 97266703 97266810 -55270449 - Lx8 LINE L1 -1 7472 7323 3 1327 582 15 0 0 chr5 97266810 97266877 -55270382 + (TC)n Simple_repeat Simple_repeat 1 67 0 3 1327 461 290 193 21 chr5 97266877 97267012 -55270247 - Lx8 LINE L1 -151 7322 7188 3 1327 850 212 119 5 chr5 97267603 97267797 -55269462 + B3 SINE B2 1 216 0 3 1327 249 33 0 0 chr5 97268142 97268172 -55269087 + (TAA)n Simple_repeat Simple_repeat 1 30 0 3 1327 255 278 26 46 chr5 97268533 97268684 -55268575 - L1M LINE L1 -2481 5401 5254 3 1327 943 62 0 8 chr5 97268940 97269070 -55268189 + B1_Mus1 SINE Alu 20 148 0 3 1327 285 146 0 0 chr5 97270656 97270704 -55266555 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1327 431 257 0 37 chr5 97270730 97270839 -55266420 + PB1D10 SINE Alu 6 110 -7 3 1327 748 181 16 0 chr5 97272330 97272457 -55264802 + B1_Mur1 SINE Alu 4 132 -17 3 1327 356 253 22 122 chr5 97272507 97272687 -55264572 - ORR1E LTR MaLR -48 311 150 3 1327 2568 115 28 34 chr5 97272718 97273214 -55264045 + BGLII_B LTR ERVK 1 436 -5 3 1327 1050 133 33 0 chr5 97273752 97273933 -55263326 - RMER15 LTR ERVL -385 190 4 3 1327 341 262 36 0 chr5 97275030 97275114 -55262145 + ID_B1 SINE B4 77 163 -61 3 1327 359 155 0 10 chr5 97275515 97275605 -55261654 + CT-rich Low_complexity Low_complexity 16 105 0 3 1327 993 106 0 0 chr5 97275605 97275785 -55261474 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1327 736 131 0 25 chr5 97275785 97275896 -55261363 + polypyrimidine Low_complexity Low_complexity 1 108 0 3 1327 1095 97 0 0 chr5 97275896 97276259 -55261000 + (TCC)n Simple_repeat Simple_repeat 1 363 0 3 1327 736 128 0 27 chr5 97276259 97276343 -55260916 + polypyrimidine Low_complexity Low_complexity 4 84 0 3 1327 588 200 0 0 chr5 97276370 97276550 -55260709 + CT-rich Low_complexity Low_complexity 1 180 0 3 1327 450 0 0 0 chr5 97277862 97277912 -55259347 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1327 367 269 32 11 chr5 97278111 97278205 -55259054 + B3A SINE B2 1 96 -102 3 1327 384 281 51 63 chr5 97278950 97279125 -55258134 + MERVK26-int LTR ERVK 284 456 -6463 3 1327 3195 323 60 37 chr5 97279155 97279682 -55257577 + MERVK26-int LTR ERVK 1547 2059 -4860 3 1327 1413 67 17 11 chr5 97279682 97279862 -55257397 + B2_Mm2 SINE B2 1 181 -14 3 1327 3195 323 60 37 chr5 97279862 97280792 -55256467 + MERVK26-int LTR ERVK 2060 3038 -3881 3 1327 1534 219 122 11 chr5 97280793 97281021 -55256238 + RLTR12B LTR ERVK 1 257 -271 4 1327 462 36 0 0 chr5 97281021 97281077 -55256182 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 4 1327 1534 222 106 13 chr5 97281077 97281339 -55255920 + RLTR12B LTR ERVK 258 551 -17 4 1327 283 231 34 0 chr5 97281344 97281461 -55255798 + (TA)n Simple_repeat Simple_repeat 2 122 0 4 1327 277 265 43 121 chr5 97281698 97281814 -55255445 + B3A SINE B2 90 196 -2 3 1327 257 279 57 9 chr5 97281941 97282046 -55255213 - Lx7 LINE L1 -9 7687 7578 4 1327 1250 7 20 0 chr5 97282186 97282335 -55254924 + (GGGAGA)n Simple_repeat Simple_repeat 3 154 0 4 1327 891 230 13 64 chr5 97282341 97282577 -55254682 - Lx7 LINE L1 -416 7280 7044 4 1327 495 265 111 0 chr5 97282742 97282904 -55254355 - Lx7 LINE L1 -651 7045 6866 4 1327 225 217 0 0 chr5 97283794 97283837 -55253422 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1327 322 100 16 16 chr5 97283837 97283898 -55253361 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 1327 225 217 0 0 chr5 97283898 97283914 -55253345 + (TG)n Simple_repeat Simple_repeat 1 16 0 4 1327 198 302 19 0 chr5 97284289 97284342 -55252917 + MIRb SINE MIR 30 83 -185 4 1327 3904 218 68 50 chr5 97284625 97285654 -55251605 + RMER1B Other Other 65 927 -139 4 1327 234 0 0 0 chr5 97285654 97285680 -55251579 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 4 1327 3904 201 52 40 chr5 97285680 97285780 -55251479 + RMER1B Other Other 928 1031 -35 4 1327 269 278 22 11 chr5 97285807 97285898 -55251361 + B4 SINE B4 5 96 -196 4 1327 459 266 68 36 chr5 97286658 97286880 -55250379 + RLTR12B LTR ERVK 3 231 -297 4 1327 450 0 0 0 chr5 97286902 97286952 -55250307 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1327 319 256 36 66 chr5 97286962 97287129 -55250130 + RLTR15 LTR ERVK 172 333 -26 4 1327 210 274 0 61 chr5 97287807 97287873 -55249386 - L2c LINE L2 -35 3352 3291 4 1327 288 77 0 0 chr5 97287918 97287957 -55249302 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1327 1795 266 52 6 chr5 97288049 97288496 -55248763 - Lx6 LINE L1 -61 7399 6951 4 1327 382 231 11 32 chr5 97288941 97289035 -55248224 - Lx5 LINE L1 -593 6867 6776 4 1327 1564 142 90 10 chr5 97289040 97289339 -55247920 + ORR1B2 LTR MaLR 1 323 -44 4 1327 3881 170 40 31 chr5 97289340 97290040 -55247219 + RMER1A Other Other 154 859 -171 4 1327 396 138 0 0 chr5 97290188 97290253 -55247006 + (TCTCCC)n Simple_repeat Simple_repeat 3 67 0 4 1327 1488 38 0 0 chr5 97291100 97291391 -55245868 + (CTGTG)n Simple_repeat Simple_repeat 1 291 0 4 1327 2842 80 5 0 chr5 97291434 97291809 -55245450 - L1_Mus3 LINE L1 -314 5569 5193 4 1327 7858 90 5 1 chr5 97291801 97292848 -55244411 + L1_Mus3 LINE L1 5588 6638 0 4 1327 807 155 47 18 chr5 97293243 97293414 -55243845 + RMER1A Other Other 854 1029 -1 4 1327 323 179 0 18 chr5 97293414 97293471 -55243788 + ORR1B2 LTR MaLR 312 367 0 4 1327 13610 186 45 32 chr5 97293471 97295752 -55241507 - Lx5 LINE L1 -695 6765 4202 4 1327 3062 77 13 3 chr5 97295752 97296144 -55241115 - MTA_Mm LTR MaLR 0 396 1 4 1327 13610 161 33 31 chr5 97296144 97296239 -55241020 - Lx5 LINE L1 -1679 4201 4106 4 1327 1232 172 299 71 chr5 97296239 97296701 -55240558 - RMER2 LTR ERV1 0 567 1 4 1327 13610 161 33 31 chr5 97296701 97297555 -55239704 - Lx5 LINE L1 -1775 4105 3269 4 1327 225 0 0 0 chr5 97298086 97298111 -55239148 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 1327 237 290 86 0 chr5 97299202 97299295 -55237964 - B1F SINE Alu -8 141 41 4 1327 237 33 0 0 chr5 97300676 97300706 -55236553 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 4 1327 665 89 53 18 chr5 97300711 97300825 -55236434 - B1_Mur4 SINE Alu -1 149 32 4 1327 213 298 116 39 chr5 97301881 97302010 -55235249 - MIRb SINE MIR -46 222 84 4 1327 1386 317 116 28 chr5 97302187 97302910 -55234349 - Lx9 LINE L1 -2 7471 6685 4 1327 424 295 77 90 chr5 97302922 97303258 -55234001 + RLTR17 LTR ERVK 60 426 -266 4 1327 660 320 14 5 chr5 97303546 97303766 -55233493 - Lx9 LINE L1 -809 6835 6614 4 1327 857 318 36 65 chr5 97304007 97304541 -55232718 - L1MA4A LINE L1 -163 6008 5484 4 1327 363 289 11 6 chr5 97304585 97304759 -55232500 + CT-rich Low_complexity Low_complexity 5 179 0 4 1327 450 0 0 0 chr5 97304761 97304811 -55232448 + (CTA)n Simple_repeat Simple_repeat 1 50 0 4 1327 1712 258 15 70 chr5 97304835 97305380 -55231879 + Lx7 LINE L1 6823 7337 -359 4 1327 1290 316 72 25 chr5 97306095 97306828 -55230431 + L1_Mur3 LINE L1 3685 4452 -1428 4 1327 435 306 27 69 chr5 97306963 97307274 -55229985 + B4A SINE B4 8 285 -7 4 1327 660 221 160 0 chr5 97307323 97307504 -55229755 - B3 SINE B2 -2 214 5 4 1327 270 0 0 0 chr5 97307507 97307537 -55229722 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 4 1327 275 288 101 43 chr5 97308255 97308393 -55228866 - LTR16C LTR ERVL -63 426 281 4 1327 374 321 104 82 chr5 97309067 97309566 -55227693 + MTE-int LTR MaLR 354 863 -717 4 1327 444 37 0 0 chr5 97309685 97309739 -55227520 + (TATG)n Simple_repeat Simple_repeat 1 54 0 4 1327 924 226 30 15 chr5 97309820 97310018 -55227241 + B3 SINE B2 8 208 -8 4 1327 233 231 19 0 chr5 97310023 97310075 -55227184 + GA-rich Low_complexity Low_complexity 3 55 0 4 1327 1246 279 61 76 chr5 97310091 97310565 -55226694 + MTE-int LTR MaLR 891 1357 -223 4 1327 254 261 196 0 chr5 97310900 97310992 -55226267 + MTE-int LTR MaLR 1351 1460 -120 4 1327 306 0 0 0 chr5 97310995 97311029 -55226230 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1327 279 198 247 0 chr5 97311049 97311130 -55226129 - RSINE1 SINE B4 -62 103 3 4 1327 438 321 38 0 chr5 97311155 97311286 -55225973 + B1F1 SINE Alu 8 143 -6 4 1327 421 266 21 91 chr5 97311587 97311637 -55225622 + ID_B1 SINE B4 52 223 0 4 1327 679 173 37 15 chr5 97311637 97311772 -55225487 + B1_Mus2 SINE Alu 10 147 0 4 1327 1392 201 87 15 chr5 97311782 97312116 -55225143 - MTD LTR MaLR -30 389 32 4 1327 542 278 80 33 chr5 97312518 97312793 -55224466 + L1MA6 LINE L1 5603 5890 -410 4 1327 1836 146 72 6 chr5 97312847 97313179 -55224080 + ORR1B1 LTR MaLR 41 394 0 4 1327 479 311 88 0 chr5 97313295 97313443 -55223816 + RSINE1 SINE B4 3 163 -2 4 1327 575 256 50 0 chr5 97313468 97313667 -55223592 + L1MA6 LINE L1 6062 6270 -30 4 1327 1156 216 149 74 chr5 97314223 97314613 -55222646 - MTD LTR MaLR 0 419 1 4 1327 315 161 0 0 chr5 97315663 97315719 -55221540 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1327 1381 46 40 6 chr5 97315774 97315948 -55221311 - B2_Mm2 SINE B2 -15 180 1 4 1327 180 111 0 0 chr5 97316288 97316315 -55220944 + (TTG)n Simple_repeat Simple_repeat 1 27 0 4 1327 241 100 40 0 chr5 97317132 97317182 -55220077 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 4 1327 1602 131 97 0 chr5 97317347 97317637 -55219622 - ORR1A3 LTR MaLR -8 318 1 4 1327 744 267 30 35 chr5 97317692 97317890 -55219369 - B3 SINE B2 -19 197 1 4 1327 23 33 0 0 chr5 97318025 97318055 -55219204 + AT_rich Low_complexity Low_complexity 1 30 0 4 1327 297 0 0 0 chr5 97318584 97318617 -55218642 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1327 928 292 112 0 chr5 97319890 97320195 -55217064 + L1ME2 LINE L1 5539 5877 -287 4 1327 336 280 69 5 chr5 97320233 97320378 -55216881 + L1ME2 LINE L1 6017 6162 0 4 1327 465 281 40 0 chr5 97321154 97321288 -55215971 + B4 SINE B4 1 151 -141 4 1327 1378 223 62 0 chr5 97321310 97321584 -55215675 - Lx9 LINE L1 -871 6773 6483 4 1327 2015 152 35 20 chr5 97321586 97321805 -55215454 + RMER4B LTR ERVK 2 223 -362 4 1327 1215 220 47 115 chr5 97321805 97322232 -55215027 - RMER10B LTR ERVL 0 398 1 4 1327 2015 152 35 20 chr5 97322232 97322408 -55214851 + RMER4B LTR ERVK 224 403 -182 4 1327 342 206 0 19 chr5 97322426 97322520 -55214739 - Lx9 LINE L1 -1728 5916 5788 4 1327 1009 263 141 41 chr5 97322604 97322993 -55214266 + Lx8 LINE L1 7044 7471 -2 4 1327 6782 41 0 5 chr5 97323440 97324249 -55213010 + L1Md_F2 LINE L1 5766 6570 -12 4 1327 369 267 68 8 chr5 97324557 97324674 -55212585 + PB1 SINE Alu 2 125 -2 4 1327 1047 59 0 0 chr5 97324765 97324900 -55212359 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 4 1327 2430 71 0 24 chr5 97325394 97325724 -55211535 - L1_Mus1 LINE L1 0 6567 6246 4 1327 278 235 0 12 chr5 97326080 97326162 -55211097 + GA-rich Low_complexity Low_complexity 3 83 0 4 1327 281 47 23 0 chr5 97326473 97326516 -55210743 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 4 1327 345 315 0 0 chr5 97326516 97326608 -55210651 - PB1D10 SINE Alu -14 103 12 4 1327 558 189 0 0 chr5 97327605 97327716 -55209543 + (TA)n Simple_repeat Simple_repeat 2 112 0 4 1327 22 0 0 0 chr5 97328213 97328235 -55209024 + AT_rich Low_complexity Low_complexity 1 22 0 4 1327 541 286 64 11 chr5 97328350 97328633 -55208626 - L1ME4a LINE L1 -197 5927 5630 4 1327 908 229 47 28 chr5 97328635 97328846 -55208413 + B3 SINE B2 1 215 -1 4 1327 894 193 62 31 chr5 97329047 97329304 -55207955 + RMER10A LTR ERVL 176 440 -2 4 1327 497 319 324 7 chr5 97329330 97329844 -55207415 + L2a LINE L2 2443 3127 -299 4 1327 261 258 16 0 chr5 97330100 97330162 -55207097 + L2a LINE L2 3324 3386 -40 4 1327 1555 246 52 29 chr5 97330187 97330669 -55206590 + L1MA6 LINE L1 5482 5974 -326 4 1327 810 184 152 27 chr5 97330670 97330854 -55206405 + B3 SINE B2 1 207 -9 4 1327 2453 267 60 77 chr5 97330883 97332158 -55205101 + L1MA4 LINE L1 3117 4369 -1774 4 1327 560 198 6 18 chr5 97332166 97332260 -55204999 + polypurine Low_complexity Low_complexity 3 96 0 4 1327 1340 62 6 0 chr5 97332260 97332439 -55204820 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1327 560 198 6 18 chr5 97332439 97332469 -55204790 + polypurine Low_complexity Low_complexity 97 125 0 4 1327 656 56 11 0 chr5 97332469 97332558 -55204701 + (GAGAA)n Simple_repeat Simple_repeat 3 92 0 4 1327 560 198 6 18 chr5 97332558 97332597 -55204662 + polypurine Low_complexity Low_complexity 126 164 0 4 1327 404 284 35 69 chr5 97332606 97332750 -55204509 + ID_B1 SINE B4 82 220 -4 4 1327 459 0 0 0 chr5 97332751 97332802 -55204457 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1327 786 280 33 45 chr5 97333324 97333660 -55203599 - L1M2 LINE L1 -664 5636 5305 4 1327 456 161 36 14 chr5 97333683 97333822 -55203437 + CT-rich Low_complexity Low_complexity 4 145 0 4 1327 388 290 0 116 chr5 97333851 97333933 -55203326 + L1MA4 LINE L1 5722 5792 -508 4 1327 543 31 0 0 chr5 97333933 97333998 -55203261 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1327 252 59 0 0 chr5 97333998 97334031 -55203228 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1327 388 290 0 116 chr5 97334031 97334146 -55203113 + L1MA4 LINE L1 5793 5896 -404 4 1327 330 183 0 0 chr5 97334193 97334264 -55202995 + GA-rich Low_complexity Low_complexity 2 72 0 4 1327 251 72 0 23 chr5 97334549 97334592 -55202667 + (CAA)n Simple_repeat Simple_repeat 1 42 0 4 1327 1091 60 0 0 chr5 97334592 97334726 -55202533 + B1_Mus2 SINE Alu 2 135 -12 5 1327 208 0 62 0 chr5 97334729 97334761 -55202498 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1327 369 0 0 0 chr5 97335755 97335796 -55201463 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1327 812 178 20 0 chr5 97336437 97336583 -55200676 + B1_Mur2 SINE Alu 1 149 0 5 1327 783 253 0 16 chr5 97336651 97336840 -55200419 + U2 snRNA snRNA 2 187 -1 5 1327 315 244 13 0 chr5 97336880 97336958 -55200301 + ID4_ SINE ID 2 80 -3 5 1327 232 298 0 0 chr5 97337604 97337661 -55199598 + ID4 SINE ID 14 70 -13 5 1327 1308 79 0 0 chr5 97337667 97337845 -55199414 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 5 1327 789 11 0 0 chr5 97337845 97337932 -55199327 + (GAA)n Simple_repeat Simple_repeat 2 88 0 5 1327 192 77 0 0 chr5 97338088 97338114 -55199145 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 5 1327 1154 222 40 0 chr5 97338118 97338391 -55198868 + MTD LTR MaLR 13 296 -123 5 1327 3223 167 21 70 chr5 97338391 97339066 -55198193 - RLTR26 LTR ERVK 0 642 1 5 1327 301 131 149 35 chr5 97339066 97339137 -55198122 + MTD LTR MaLR 307 387 -32 5 1327 2078 177 154 18 chr5 97339224 97339244 -55198015 + RMER4B LTR ERVK 17 39 -546 5 1327 312 27 0 0 chr5 97339244 97339281 -55197978 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1327 2078 177 154 18 chr5 97339281 97339485 -55197774 + RMER4B LTR ERVK 40 257 -328 5 1327 313 22 43 0 chr5 97339485 97339531 -55197728 + (TTGG)n Simple_repeat Simple_repeat 1 48 0 5 1327 2078 177 154 18 chr5 97339531 97339806 -55197453 + RMER4B LTR ERVK 258 583 -2 5 1327 861 0 28 0 chr5 97341231 97341340 -55195919 + (CA)n Simple_repeat Simple_repeat 2 113 0 5 1327 292 243 9 9 chr5 97341490 97341602 -55195657 + CT-rich Low_complexity Low_complexity 2 113 0 5 1327 537 238 178 58 chr5 97342298 97342524 -55194735 + B4A SINE B4 15 270 -22 5 1327 369 0 0 0 chr5 97342524 97342565 -55194694 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1327 537 238 178 58 chr5 97342565 97342579 -55194680 + B4A SINE B4 271 284 -8 5 1327 183 288 34 0 chr5 97343081 97343140 -55194119 + MIR SINE MIR 148 208 -54 5 1327 1147 69 0 7 chr5 97343314 97343460 -55193799 + B1_Mus1 SINE Alu 2 146 -2 5 1327 204 122 0 0 chr5 97343472 97343513 -55193746 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 5 1327 434 290 24 8 chr5 97343556 97343681 -55193578 + B4A SINE B4 14 140 -152 5 1327 304 298 0 0 chr5 97343694 97343778 -55193481 + B4A SINE B4 186 269 -23 5 1327 261 0 0 0 chr5 97343778 97343807 -55193452 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1327 21 0 0 0 chr5 97344520 97344541 -55192718 + AT_rich Low_complexity Low_complexity 1 21 0 5 1327 1527 276 78 67 chr5 97344686 97345425 -55191834 + Lx8 LINE L1 6629 7375 -98 5 1327 2385 91 25 0 chr5 97345425 97345744 -55191515 - ORR1A2 LTR MaLR 0 327 1 5 1327 1527 276 78 67 chr5 97345744 97345836 -55191423 + Lx8 LINE L1 7376 7469 -4 5 1327 652 188 6 6 chr5 97347716 97348067 -55189192 + (TG)n Simple_repeat Simple_repeat 1 351 0 5 1327 265 313 0 35 chr5 97348067 97348153 -55189106 - B3 SINE B2 -133 83 1 5 1327 25 65 0 0 chr5 97348599 97348645 -55188614 + AT_rich Low_complexity Low_complexity 1 46 0 5 1327 519 206 9 18 chr5 97348966 97349075 -55188184 - PB1D9 SINE Alu 0 120 13 5 1327 263 323 9 57 chr5 97348999 97349104 -55188155 - B4A SINE B4 -119 173 74 5 1327 1129 69 7 0 chr5 97349191 97349335 -55187924 + B1_Mm SINE Alu 3 147 0 5 1327 235 271 82 20 chr5 97349394 97349492 -55187767 + MIRc SINE MIR 68 171 -97 5 1327 298 310 58 0 chr5 97349598 97349685 -55187574 + B1F SINE Alu 4 95 -54 5 1327 191 250 36 0 chr5 97349757 97349813 -55187446 + MIRc SINE MIR 9 66 -202 5 1327 347 342 75 7 chr5 97349828 97349975 -55187284 + B4A SINE B4 134 290 -2 5 1327 195 259 0 0 chr5 97349978 97350036 -55187223 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1327 350 273 19 39 chr5 97351808 97351964 -55185295 + GA-rich Low_complexity Low_complexity 2 154 0 5 1327 661 287 133 16 chr5 97352670 97352985 -55184274 + ORR1E LTR MaLR 6 357 -2 5 1327 1045 332 33 16 chr5 97352985 97353435 -55183824 + ORR1E-int LTR MaLR 1 458 -1122 5 1327 227 239 15 15 chr5 97353489 97353557 -55183702 + ORR1D1 LTR MaLR 1 68 -306 5 1327 259 197 73 73 chr5 97353928 97354010 -55183249 + 4.5SRNA scRNA scRNA 5 86 -8 5 1327 426 168 15 11 chr5 97353952 97354039 -55183220 + B1_Mur3 SINE Alu 33 114 -35 5 1327 180 0 0 0 chr5 97354039 97354059 -55183200 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1327 419 188 19 68 chr5 97354059 97354074 -55183185 + B1_Mur2 SINE Alu 115 130 -19 5 1327 437 247 67 103 chr5 97354200 97354394 -55182865 - RLTR19-int LTR ERVK -3068 3069 2883 5 1327 261 172 0 0 chr5 97354397 97354461 -55182798 + G-rich Low_complexity Low_complexity 1 64 0 5 1327 1264 268 70 31 chr5 97354507 97354992 -55182267 - RLTR19-int LTR ERVK -3281 2856 2353 5 1327 2441 145 106 41 chr5 97354993 97355483 -55181776 + Lx5 LINE L1 6529 7050 0 5 1327 498 165 45 9 chr5 97355515 97355625 -55181634 - RLTR19-int LTR ERVK -3395 2127 2014 5 1327 249 151 0 0 chr5 97355761 97355814 -55181445 + T-rich Low_complexity Low_complexity 1 53 0 5 1327 1229 34 0 26 chr5 97355833 97355984 -55181275 - B1_Mus1 SINE Alu 0 148 2 5 1327 234 0 0 0 chr5 97356021 97356047 -55181212 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1327 1329 71 26 32 chr5 97356065 97356255 -55181004 + B2_Mm2 SINE B2 1 189 -6 5 1327 1069 236 273 20 chr5 97356270 97356783 -55180476 - MTC-int LTR MaLR -163 1095 474 5 1327 288 169 345 12 chr5 97356903 97356987 -55180272 - RLTR19-int LTR ERVK -3658 1864 1753 5 1327 2800 243 204 9 chr5 97357007 97357156 -55180103 + RMER1A Other Other 71 223 -807 5 1327 2503 55 39 0 chr5 97357156 97357467 -55179792 - ORR1A2 LTR MaLR 0 327 5 5 1327 2800 243 204 9 chr5 97357467 97358115 -55179144 + RMER1A Other Other 224 1023 -7 5 1327 794 257 65 85 chr5 97358215 97358602 -55178657 + RLTR42-int LTR ERVK 1694 2072 -3450 5 1327 1544 233 64 57 chr5 97358613 97359149 -55178110 - RMER1A Other Other -557 473 1 5 1327 989 189 62 10 chr5 97359291 97359499 -55177760 - RLTR19-int LTR ERVK -4179 1343 1125 5 1327 255 276 0 54 chr5 97359616 97359708 -55177551 - RLTR19-int LTR ERVK -5252 885 799 5 1327 449 315 39 91 chr5 97360995 97361281 -55175978 + ORR1E LTR MaLR 70 340 -19 5 1327 598 287 0 27 chr5 97361856 97362003 -55175256 + RSINE1 SINE B4 13 155 -10 5 1327 21 0 0 0 chr5 97362007 97362028 -55175231 + AT_rich Low_complexity Low_complexity 1 21 0 5 1327 237 347 129 0 chr5 97362606 97362730 -55174529 - MIRc SINE MIR -65 203 64 5 1327 674 91 0 0 chr5 97362734 97362833 -55174426 + B1_Mur3 SINE Alu 41 139 -10 5 1327 732 219 4 0 chr5 97363077 97363320 -55173939 + GA-rich Low_complexity Low_complexity 1 244 0 5 1327 189 0 0 0 chr5 97364186 97364207 -55173052 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5 1327 251 267 22 11 chr5 97364230 97364245 -55173014 - BC1_Mm scRNA scRNA -57 95 4 5 1327 324 200 40 13 chr5 97364245 97364321 -55172938 - ID SINE ID -143 81 4 5 1327 627 310 0 0 chr5 97364378 97364523 -55172736 - RSINE1 SINE B4 -17 148 4 5 1327 1210 61 0 0 chr5 97365058 97365206 -55172053 + B1_Mus1 SINE Alu 1 148 0 5 1327 280 301 84 77 chr5 97365216 97365371 -55171888 + RSINE1 SINE B4 3 158 -7 5 1327 180 125 0 0 chr5 97365379 97365411 -55171848 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1327 297 118 0 0 chr5 97365578 97365629 -55171630 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1327 198 286 0 20 chr5 97366046 97366096 -55171163 + MIR3 SINE MIR 119 167 -41 5 1327 720 202 3 10 chr5 97367102 97367403 -55169856 + (CA)n Simple_repeat Simple_repeat 1 298 0 5 1327 425 292 41 0 chr5 97367946 97368093 -55169166 + MLT2B3 LTR ERVL 28 180 -374 5 1327 293 302 214 8 chr5 97368209 97368326 -55168933 - RSINE1 SINE B4 -24 141 1 5 1327 267 31 0 0 chr5 97368509 97368541 -55168718 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1327 275 297 31 52 chr5 97368560 97368656 -55168603 + MLT2B3 LTR ERVL 395 488 -66 5 1327 358 154 26 0 chr5 97368694 97368772 -55168487 + (CA)n Simple_repeat Simple_repeat 2 81 0 5 1327 306 277 0 38 chr5 97368979 97369084 -55168175 + RSINE1 SINE B4 4 104 -61 5 1327 339 25 0 0 chr5 97369178 97369218 -55168041 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1327 249 208 0 0 chr5 97369765 97369818 -55167441 + A-rich Low_complexity Low_complexity 3 55 0 5 1327 384 321 0 21 chr5 97370833 97370976 -55166283 + Arthur1A DNA Tip100 22 161 -16 5 1327 261 341 53 12 chr5 97371242 97371411 -55165848 + L1MC LINE L1 5723 5898 -1984 5 1327 489 34 0 0 chr5 97371624 97371683 -55165576 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 5 1327 362 256 76 8 chr5 97371714 97371816 -55165443 + RSINE1 SINE B4 40 150 -15 5 1327 315 0 0 0 chr5 97371816 97371851 -55165408 + (TC)n Simple_repeat Simple_repeat 1 35 0 5 1327 362 256 76 8 chr5 97371851 97371866 -55165393 + RSINE1 SINE B4 151 165 0 5 1327 351 178 37 18 chr5 97371867 97371976 -55165283 + (CATA)n Simple_repeat Simple_repeat 4 114 0 5 1327 650 242 4 0 chr5 97371955 97372201 -55165058 + (CA)n Simple_repeat Simple_repeat 1 247 0 5 1327 220 262 96 36 chr5 97372796 97372879 -55164380 + L2b LINE L2 3286 3373 -2 5 1327 392 274 10 0 chr5 97373410 97373512 -55163747 + PB1D10 SINE Alu 13 115 -2 5 1327 349 223 73 51 chr5 97373520 97373657 -55163602 + L1MA6 LINE L1 6160 6299 -1 5 1327 230 314 105 0 chr5 97373687 97373792 -55163467 + PB1D10 SINE Alu 2 117 0 5 1327 336 24 0 0 chr5 97373902 97373943 -55163316 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1327 481 299 70 11 chr5 97374983 97375169 -55162090 - B3A SINE B2 0 198 2 5 1327 475 278 25 0 chr5 97375204 97375366 -55161893 - Charlie5 DNA MER1_type -225 2399 2234 5 1327 695 165 8 0 chr5 97375368 97375501 -55161758 + GA-rich Low_complexity Low_complexity 1 134 0 5 1327 339 277 30 50 chr5 97375628 97375727 -55161532 + PB1D7 SINE Alu 24 120 0 5 1327 406 259 93 17 chr5 97375745 97375863 -55161396 + B3A SINE B2 31 157 -41 5 1327 402 21 0 0 chr5 97375894 97375941 -55161318 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1327 2764 28 28 0 chr5 97376373 97376696 -55160563 + IAPEY3_LTR LTR ERVK 1 332 0 5 1327 353 335 3 0 chr5 97376780 97376891 -55160368 + PB1D10 SINE Alu 3 116 -33 5 1327 204 125 0 0 chr5 97376915 97376947 -55160312 + (GGA)n Simple_repeat Simple_repeat 2 33 0 5 1327 735 221 0 20 chr5 97377314 97377466 -55159793 - B1_Mur1 SINE Alu 0 149 1 6 1327 410 313 20 0 chr5 97377498 97377645 -55159614 + L1ME3A LINE L1 5804 5953 -220 6 1327 318 232 14 0 chr5 97377709 97377778 -55159481 + ID SINE ID 15 84 -140 6 1327 1173 149 21 60 chr5 97378262 97378497 -55158762 - URR1A DNA MER1_type 0 226 1 6 1327 24 32 0 0 chr5 97379490 97379521 -55157738 + AT_rich Low_complexity Low_complexity 1 31 0 6 1327 221 288 25 0 chr5 97379530 97379610 -55157649 + ID4 SINE ID 2 83 0 6 1327 208 325 34 40 chr5 97379646 97379822 -55157437 + L2 LINE L2 1837 2011 -1408 6 1327 204 324 121 7 chr5 97379936 97380076 -55157183 + L2 LINE L2 2328 2483 -936 6 1327 477 0 0 0 chr5 97380456 97380509 -55156750 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1327 263 283 79 20 chr5 97382977 97383078 -55154181 - MER5A1 DNA MER1_type -41 125 19 6 1327 498 268 134 0 chr5 97384031 97384158 -55153101 - RSINE1 SINE B4 -19 146 3 6 1327 232 290 14 0 chr5 97385341 97385410 -55151849 + ID4 SINE ID 1 70 -13 6 1327 333 228 0 0 chr5 97385658 97385737 -55151522 + (TA)n Simple_repeat Simple_repeat 2 80 0 6 1327 207 0 0 0 chr5 97386462 97386485 -55150774 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 6 165 602 259 7 7 chr5 97386491 97386627 -55150632 - B1_Mur2 SINE Alu -13 136 1 6 1328 420 274 52 7 chr5 97386748 97386884 -55150375 - RSINE1 SINE B4 -20 145 4 6 1328 198 0 0 0 chr5 97386894 97386916 -55150343 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1328 29 0 0 0 chr5 97386944 97386973 -55150286 + AT_rich Low_complexity Low_complexity 1 29 0 6 1328 786 202 0 0 chr5 97387026 97387204 -55150055 + (TTG)n Simple_repeat Simple_repeat 2 179 0 6 1328 239 378 0 0 chr5 97387209 97387283 -55149976 - ID4_ SINE ID -8 75 2 6 1328 495 313 68 73 chr5 97387690 97387920 -55149339 - L1ME3 LINE L1 -26 6136 5899 6 1328 1582 48 21 0 chr5 97387920 97388108 -55149151 + B2_Mm1t SINE B2 2 193 0 6 1328 495 313 68 73 chr5 97388108 97388132 -55149127 - L1ME3 LINE L1 -264 5898 5883 6 1328 584 225 42 14 chr5 97388132 97388276 -55148983 - B1_Mur1 SINE Alu 0 149 2 6 1328 495 313 68 73 chr5 97388276 97388458 -55148801 - L1ME3 LINE L1 -280 5882 5701 6 1328 388 271 10 10 chr5 97388467 97388564 -55148695 - PB1D10 SINE Alu -20 97 1 6 1328 328 250 14 0 chr5 97388501 97388573 -55148686 - B4A SINE B4 -143 149 77 6 1328 1468 159 106 111 chr5 97388626 97388702 -55148557 - ORR1B1 LTR MaLR -8 386 350 6 1328 1104 103 0 0 chr5 97388702 97388847 -55148412 - B1_Mus2 SINE Alu -1 146 2 6 1328 1468 159 106 111 chr5 97388847 97389158 -55148101 - ORR1B1 LTR MaLR -45 349 1 6 1328 637 288 134 7 chr5 97389177 97389467 -55147792 - L1ME3 LINE L1 -573 5591 5265 6 1328 854 99 41 0 chr5 97389956 97390127 -55147132 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 6 1328 467 224 94 8 chr5 97390135 97390252 -55147007 - B1F1 SINE Alu -18 131 5 6 1328 445 314 45 45 chr5 97391374 97391574 -55145685 - MER58A DNA MER1_type -16 208 9 6 1328 617 217 79 7 chr5 97392171 97392310 -55144949 - B1F SINE Alu 0 149 1 6 1328 206 301 24 12 chr5 97392422 97392506 -55144753 + (TA)n Simple_repeat Simple_repeat 2 86 0 6 1328 642 49 0 0 chr5 97392807 97392889 -55144370 + (TC)n Simple_repeat Simple_repeat 1 82 0 6 1328 541 173 12 29 chr5 97392937 97393110 -55144149 + G-rich Low_complexity Low_complexity 4 173 0 6 1328 514 118 21 0 chr5 97393339 97393432 -55143827 + (GGGGA)n Simple_repeat Simple_repeat 5 99 0 6 1328 404 37 19 0 chr5 97393892 97393946 -55143313 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 6 1328 510 31 0 0 chr5 97394435 97394499 -55142760 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1328 207 0 0 0 chr5 97394812 97394835 -55142424 + (GAA)n Simple_repeat Simple_repeat 2 24 0 6 1328 288 0 0 0 chr5 97394966 97394998 -55142261 + (TA)n Simple_repeat Simple_repeat 2 33 0 6 1328 1084 141 168 0 chr5 97395662 97395853 -55141406 + URR1B DNA MER1_type 1 223 -2 6 1328 204 122 0 0 chr5 97395876 97395917 -55141342 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 6 1328 239 286 113 26 chr5 97397290 97397441 -55139818 - Charlie5 DNA MER1_type -234 2390 2227 6 1328 246 95 0 0 chr5 97397600 97397642 -55139617 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1328 531 0 0 0 chr5 97398065 97398124 -55139135 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 6 1328 244 328 0 13 chr5 97398465 97398557 -55138702 + ID4 SINE ID 13 103 -49 6 1328 405 58 0 0 chr5 97398568 97398620 -55138639 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1328 1279 230 115 93 chr5 97399397 97399805 -55137454 - MTD LTR MaLR -2 417 1 6 1328 486 253 19 45 chr5 97400270 97400427 -55136832 - ID_B1 SINE B4 -2 222 70 6 1328 194 91 30 0 chr5 97400796 97400829 -55136430 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 6 1328 184 373 63 32 chr5 97400838 97400996 -55136263 - L3 LINE CR1 -397 4092 3930 6 1328 919 289 50 23 chr5 97401074 97401417 -55135842 - MLT1A0 LTR MaLR -13 352 1 6 1328 249 364 0 0 chr5 97401538 97401626 -55135633 + ID_B1 SINE B4 74 161 -63 6 1328 330 222 14 0 chr5 97401555 97401627 -55135632 + B1_Mus1 SINE Alu 11 83 -65 6 1328 1085 157 399 0 chr5 97401751 97402012 -55135247 - ORR1B2 LTR MaLR 0 367 3 6 1328 307 197 16 32 chr5 97402555 97402618 -55134641 + RSINE1 SINE B4 43 104 -61 6 1328 366 23 0 0 chr5 97402753 97402796 -55134463 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1328 459 309 43 0 chr5 97402800 97402939 -55134320 - RSINE1 SINE B4 -6 159 15 6 1328 181 0 69 0 chr5 97403342 97403371 -55133888 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 6 1328 1603 167 56 42 chr5 97404711 97405068 -55132191 + ORR1D1 LTR MaLR 1 362 -12 6 1328 637 291 79 36 chr5 97405088 97405366 -55131893 + MTE2a LTR MaLR 90 379 0 6 1328 332 261 227 50 chr5 97405366 97405564 -55131695 + B4 SINE B4 37 269 -23 6 1328 318 50 0 0 chr5 97405565 97405605 -55131654 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1328 216 0 0 0 chr5 97406040 97406064 -55131195 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1328 356 225 0 91 chr5 97406066 97406154 -55131105 - PB1D9 SINE Alu -34 86 7 6 1328 226 292 0 71 chr5 97406100 97406170 -55131089 - ID_B1 SINE B4 -83 141 77 6 1328 863 247 6 0 chr5 97406734 97406912 -55130347 - B3 SINE B2 -6 210 32 6 1328 218 32 32 0 chr5 97406928 97406959 -55130300 + (TCTCTG)n Simple_repeat Simple_repeat 1 32 0 6 1328 502 170 12 0 chr5 97406961 97407132 -55130127 + CT-rich Low_complexity Low_complexity 2 174 0 6 1328 1962 144 0 35 chr5 97407396 97407713 -55129546 + L1_Mur3 LINE L1 5524 5829 -51 6 1328 339 271 61 11 chr5 97409475 97409604 -55127655 - MIR SINE MIR -39 229 97 6 1328 22 0 0 0 chr5 97410505 97410527 -55126732 + AT_rich Low_complexity Low_complexity 1 22 0 6 1328 223 360 45 19 chr5 97410578 97410734 -55126525 - MIR SINE MIR -44 218 59 6 1328 432 55 0 0 chr5 97411135 97411190 -55126069 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1328 218 105 0 26 chr5 97412592 97412631 -55124628 + (TCC)n Simple_repeat Simple_repeat 2 39 0 6 1328 217 147 80 0 chr5 97413528 97413603 -55123656 + (TA)n Simple_repeat Simple_repeat 1 81 0 6 1328 294 275 12 12 chr5 97413603 97413684 -55123575 - ID2 SINE ID -1 82 2 6 1328 654 244 0 87 chr5 97414034 97414218 -55123041 - B4 SINE B4 -7 285 118 6 1328 658 185 0 0 chr5 97414208 97414327 -55122932 + B1_Mus1 SINE Alu 30 148 0 6 1328 188 337 84 20 chr5 97414438 97414641 -55122618 + L2c LINE L2 3125 3340 -47 6 1328 2178 195 113 53 chr5 97415525 97416109 -55121150 - RMER1C Other Other -15 1327 709 6 1328 399 299 9 0 chr5 97416152 97416259 -55121000 - PB1 SINE Alu -3 124 17 6 1328 281 346 0 0 chr5 97416346 97416427 -55120832 - ID4 SINE ID -1 82 2 6 1328 756 222 0 0 chr5 97417186 97417366 -55119893 + GA-rich Low_complexity Low_complexity 1 180 0 6 1328 471 278 83 0 chr5 97418227 97418360 -55118899 - B1F SINE Alu -1 148 5 6 1328 391 307 143 16 chr5 97418928 97419110 -55118149 - Lx8 LINE L1 -194 7279 7075 6 1328 386 277 58 14 chr5 97419111 97419250 -55118009 + Lx9 LINE L1 5830 5974 -1670 6 1328 673 183 15 30 chr5 97419434 97419569 -55117690 + B1_Mus2 SINE Alu 15 147 0 6 1328 1367 300 96 31 chr5 97419802 97420438 -55116821 + Lx9 LINE L1 6521 7197 -447 6 1328 293 100 20 0 chr5 97420515 97420565 -55116694 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 6 1328 404 276 26 8 chr5 97421232 97421349 -55115910 - B4A SINE B4 -147 145 27 6 1328 189 0 0 0 chr5 97422495 97422516 -55114743 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 6 1328 3164 134 54 27 chr5 97422864 97423495 -55113764 - RMER6A LTR ERVK 0 756 109 6 1328 859 268 50 0 chr5 97423689 97423887 -55113372 + B3 SINE B2 2 209 -7 6 1328 224 250 118 12 chr5 97424507 97424592 -55112667 - RSINE1 SINE B4 -29 136 43 6 1328 246 310 0 27 chr5 97425337 97425410 -55111849 - PB1D10 SINE Alu -2 115 45 6 1328 409 305 7 71 chr5 97425453 97425594 -55111665 + ID_B1 SINE B4 81 212 -12 6 1328 265 168 30 40 chr5 97426613 97426712 -55110547 + (CCCCG)n Simple_repeat Simple_repeat 4 101 0 6 1328 184 39 35 88 chr5 97426979 97427036 -55110223 + (CGG)n Simple_repeat Simple_repeat 2 55 0 6 1328 25 31 0 0 chr5 97427156 97427188 -55110071 + GC_rich Low_complexity Low_complexity 1 32 0 6 1328 189 0 0 0 chr5 97427526 97427547 -55109712 + (TC)n Simple_repeat Simple_repeat 2 22 0 6 1328 300 111 0 0 chr5 97428581 97428626 -55108633 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1328 267 275 46 56 chr5 97428667 97428775 -55108484 - PB1D10 SINE Alu -10 107 1 6 1328 669 279 67 67 chr5 97428857 97429126 -55108133 - B4A SINE B4 0 292 24 7 1328 645 164 148 0 chr5 97429164 97429292 -55107967 + B1_Mur2 SINE Alu 2 148 -1 7 1328 773 295 98 25 chr5 97429699 97430106 -55107153 + MER82 DNA MER2_type 28 464 -189 7 1328 324 169 0 15 chr5 97430720 97430786 -55106473 - ID_B1 SINE B4 0 224 160 7 1328 180 0 0 0 chr5 97432540 97432560 -55104699 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1328 438 154 0 0 chr5 97432560 97432638 -55104621 + CT-rich Low_complexity Low_complexity 1 78 0 7 1328 569 115 183 0 chr5 97432639 97432743 -55104516 - B1_Mus2 SINE Alu -6 141 19 7 1328 282 297 99 28 chr5 97432877 97433019 -55104240 - RSINE1 SINE B4 -13 152 1 7 1328 23 0 0 0 chr5 97433141 97433164 -55104095 + AT_rich Low_complexity Low_complexity 1 23 0 7 1328 359 250 21 42 chr5 97433646 97433724 -55103535 + MLT1A0 LTR MaLR 238 313 -52 7 1328 2615 252 125 19 chr5 97433724 97434603 -55102656 + RCHARR1 DNA MER1_type 3 974 0 7 1328 297 0 0 0 chr5 97436337 97436370 -55100889 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1328 567 0 0 0 chr5 97436928 97436991 -55100268 + (TTCTC)n Simple_repeat Simple_repeat 3 65 0 7 1328 1001 109 94 39 chr5 97437209 97437390 -55099869 - B2_Mm2 SINE B2 0 195 5 7 1328 186 71 0 0 chr5 97437393 97437421 -55099838 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7 1328 1239 48 0 0 chr5 97438407 97438553 -55098706 - B1_Mus2 SINE Alu 0 147 2 7 1328 682 260 52 74 chr5 97438702 97439044 -55098215 - ORR1E LTR MaLR -60 334 1 7 1328 557 273 70 0 chr5 97439218 97439390 -55097869 - L1MB3 LINE L1 -186 5997 5814 7 1328 257 161 0 54 chr5 97439395 97439451 -55097808 + T-rich Low_complexity Low_complexity 32 87 0 7 1328 1038 57 35 7 chr5 97439451 97439593 -55097666 - B1_Mm SINE Alu 0 147 2 7 1328 257 161 0 54 chr5 97439593 97439628 -55097631 + T-rich Low_complexity Low_complexity 1 31 0 7 1328 222 273 0 0 chr5 97439644 97439699 -55097560 - B1F1 SINE Alu -94 55 1 7 1328 278 244 27 24 chr5 97439701 97439838 -55097421 - L1MB3 LINE L1 -359 5824 5689 7 1328 455 216 0 8 chr5 97439840 97439957 -55097302 + (TATATG)n Simple_repeat Simple_repeat 1 116 0 7 1328 329 262 116 52 chr5 97440008 97440241 -55097018 - L1MB3 LINE L1 -572 5611 5364 7 1328 909 229 166 114 chr5 97440338 97440993 -55096266 + Charlie1 DNA MER1_type 1796 2484 -297 7 1328 224 207 35 0 chr5 97441118 97441176 -55096083 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1328 316 248 66 13 chr5 97441243 97441394 -55095865 + MER33 DNA MER1_type 149 307 -17 7 1328 244 258 72 39 chr5 97441574 97441660 -55095599 + ORR1E LTR MaLR 279 375 -4 7 1328 366 239 35 26 chr5 97442397 97442513 -55094746 - B1F SINE Alu -16 133 17 7 1328 318 275 84 39 chr5 97443147 97443302 -55093957 - L1MB3 LINE L1 -258 6033 5872 7 1328 358 247 47 0 chr5 97443483 97443568 -55093691 - B1_Mur2 SINE Alu -54 95 7 7 1328 1300 312 85 2 chr5 97444279 97444879 -55092380 - Lx8 LINE L1 -201 7272 6623 7 1328 408 250 0 0 chr5 97445161 97445269 -55091990 - Lx9 LINE L1 -8 7636 7529 7 1328 448 261 176 0 chr5 97445591 97445733 -55091526 - B3A SINE B2 -29 169 3 7 1328 1002 100 0 0 chr5 97446923 97447063 -55090196 + B1_Mus1 SINE Alu 2 141 -7 7 1328 180 0 0 0 chr5 97447063 97447083 -55090176 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1328 413 56 56 14 chr5 97447694 97447766 -55089493 - Lx LINE L1 -5 6649 6575 7 1328 457 271 82 8 chr5 97447921 97448055 -55089204 - B1_Mur2 SINE Alu -1 148 5 7 1328 281 24 0 47 chr5 97448874 97448917 -55088342 + (GGGTG)n Simple_repeat Simple_repeat 3 43 0 7 1328 246 225 164 27 chr5 97449415 97449488 -55087771 - ID4_ SINE ID 0 83 1 7 1328 232 271 0 17 chr5 97449522 97449582 -55087677 - B4A SINE B4 -153 139 81 7 1328 596 181 179 10 chr5 97449593 97449788 -55087471 - L1MA4 LINE L1 -27 6273 6046 7 1328 255 216 236 38 chr5 97450828 97450839 -55086420 - B1_Mus1 SINE Alu 0 148 22 7 1328 324 202 221 11 chr5 97450839 97450934 -55086325 - ID_B1 SINE B4 -8 216 102 7 1328 2535 134 24 10 chr5 97454320 97454735 -55082524 - MTC LTR MaLR 0 421 1 7 1328 542 177 18 0 chr5 97456504 97456617 -55080642 + GA-rich Low_complexity Low_complexity 3 117 0 7 1328 276 53 0 0 chr5 97456618 97456656 -55080603 + (TGAG)n Simple_repeat Simple_repeat 4 41 0 7 1328 495 212 114 9 chr5 97456666 97456780 -55080479 - B1_Mur2 SINE Alu -21 128 3 7 1328 550 291 136 25 chr5 97457728 97458088 -55079171 - L1MB5 LINE L1 -63 6115 5702 7 1328 367 228 21 42 chr5 97458730 97458872 -55078387 - RLTR15 LTR ERVK -188 171 33 7 1328 300 319 82 13 chr5 97459214 97459373 -55077886 - Charlie7 DNA MER1_type -2090 522 353 7 1328 602 120 9 69 chr5 97459491 97459607 -55077652 - B1_Mur3 SINE Alu 0 149 41 7 1328 231 136 30 119 chr5 97459551 97459618 -55077641 - 4.5SRNA scRNA scRNA -8 86 26 7 1328 195 42 0 0 chr5 97459618 97459642 -55077617 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1328 447 286 22 29 chr5 97459755 97459892 -55077367 - RSINE1 SINE B4 -27 138 3 7 1328 485 266 8 39 chr5 97460716 97460845 -55076414 - RSINE1 SINE B4 -13 152 28 7 1328 755 290 31 4 chr5 97460874 97461099 -55076160 - B4 SINE B4 -59 233 3 7 1328 508 269 79 0 chr5 97461207 97461380 -55075879 - B3 SINE B2 -3 195 1 7 1328 219 139 0 0 chr5 97461810 97461846 -55075413 + (CCCCCT)n Simple_repeat Simple_repeat 5 40 0 7 1328 684 179 52 7 chr5 97461900 97462035 -55075224 + B1_Mur1 SINE Alu 9 149 0 7 1328 252 161 0 0 chr5 97462678 97462740 -55074519 + CT-rich Low_complexity Low_complexity 1 62 0 7 1328 1364 138 18 0 chr5 97463450 97463668 -55073591 + URR1A DNA MER1_type 5 226 0 7 1328 234 0 0 0 chr5 97464141 97464167 -55073092 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1328 1103 71 0 0 chr5 97464286 97464426 -55072833 + B1_Mus1 SINE Alu 2 141 -7 7 1328 333 0 0 0 chr5 97464431 97464468 -55072791 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 7 1328 730 235 18 85 chr5 97464470 97464579 -55072680 - Lx8 LINE L1 -587 6886 6788 7 1328 674 184 89 56 chr5 97464579 97464758 -55072501 + B2_Mm2 SINE B2 2 186 -9 7 1328 730 235 18 85 chr5 97464758 97464871 -55072388 - Lx8 LINE L1 -686 6787 6679 7 1328 248 309 56 35 chr5 97466171 97466315 -55070944 + L2a LINE L2 3280 3426 0 7 1328 359 341 34 34 chr5 97466517 97466696 -55070563 - MIR SINE MIR -37 225 47 7 1328 180 0 0 0 chr5 97467312 97467332 -55069927 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1328 881 220 73 0 chr5 97467842 97468033 -55069226 - B3 SINE B2 -11 205 1 7 1328 378 357 26 7 chr5 97470427 97470582 -55066677 - RSINE1 SINE B4 -6 159 2 7 1328 231 125 0 0 chr5 97470737 97470777 -55066482 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 7 1328 355 34 220 0 chr5 97472468 97472527 -55064732 + BC1_Mm scRNA scRNA 5 76 -76 7 1328 363 23 0 0 chr5 97472763 97472807 -55064452 + (TG)n Simple_repeat Simple_repeat 1 44 0 7 1328 704 224 39 0 chr5 97472824 97472980 -55064279 - B3A SINE B2 -36 162 1 7 1328 308 321 75 0 chr5 97473026 97473132 -55064127 - RSINE1 SINE B4 -29 136 23 7 1328 1507 190 67 9 chr5 97473301 97473631 -55063628 - MTD LTR MaLR -5 414 66 7 1328 222 327 18 26 chr5 97475072 97475185 -55062074 + PB1D10 SINE Alu 5 116 -1 7 1328 240 250 0 30 chr5 97475185 97475251 -55062008 + ID4_ SINE ID 2 65 -18 7 1328 243 152 0 0 chr5 97475585 97475631 -55061628 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1328 440 235 86 20 chr5 97477010 97477162 -55060097 + RSINE1 SINE B4 4 165 0 7 1328 226 241 14 0 chr5 97477910 97478055 -55059204 + (CCCTAA)n Simple_repeat Simple_repeat 1 147 0 7 1328 282 326 14 22 chr5 97478055 97478193 -55059066 + C-rich Low_complexity Low_complexity 5 141 0 7 1328 1235 194 44 24 chr5 97480204 97480522 -55056737 - Lx5 LINE L1 -4 7054 6649 7 1328 196 314 114 16 chr5 97480522 97480645 -55056614 + L4 LINE RTE 815 949 -1080 7 1328 389 224 47 77 chr5 97480809 97480978 -55056281 + RSINE1 SINE B4 2 165 0 7 1328 864 94 0 0 chr5 97481745 97481873 -55055386 - MTB_Mm LTR MaLR -257 150 23 7 1328 1430 89 5 0 chr5 97482530 97482721 -55054538 + B2_Mm1a SINE B2 2 193 0 7 1328 185 0 40 0 chr5 97483108 97483133 -55054126 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1328 598 129 2 0 chr5 97483136 97483244 -55054015 - B1_Mur4 SINE Alu 0 150 40 7 1328 266 264 8 160 chr5 97483142 97483273 -55053986 - B4 SINE B4 -72 220 110 7 1328 623 216 41 56 chr5 97485096 97485292 -55051967 + Lx8 LINE L1 7279 7471 -2 7 1328 313 270 23 45 chr5 97486154 97486286 -55050973 + B4A SINE B4 5 133 -159 7 1328 280 250 65 130 chr5 97486324 97486508 -55050751 + B4 SINE B4 121 292 0 7 1328 363 44 0 0 chr5 97486508 97486553 -55050706 + (CACG)n Simple_repeat Simple_repeat 3 47 0 7 1328 314 93 0 0 chr5 97486600 97486643 -55050616 + L1_Mur1 LINE L1 4970 5012 -874 7 1328 931 163 0 0 chr5 97486940 97487087 -55050172 - B1_Mur4 SINE Alu -2 148 2 7 1328 589 279 100 0 chr5 97487645 97487835 -55049424 - B3 SINE B2 -7 209 1 7 1328 520 227 0 0 chr5 97487943 97488062 -55049197 + B3A SINE B2 1 119 -79 7 1328 4307 159 71 5 chr5 97488239 97488966 -55048293 + RMER12 LTR ERVK 8 764 -558 7 1328 366 23 0 0 chr5 97488966 97489009 -55048250 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 7 1328 4307 159 71 5 chr5 97489009 97489056 -55048203 + RMER12 LTR ERVK 765 831 -491 7 1328 237 108 0 0 chr5 97489056 97489093 -55048166 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 8 1328 4307 201 64 58 chr5 97489093 97489372 -55047887 + RMER12 LTR ERVK 832 1156 -166 7 1328 297 274 180 61 chr5 97489910 97490171 -55047088 - B4A SINE B4 0 292 1 8 1328 243 231 0 0 chr5 97490183 97490235 -55047024 - B4A SINE B4 -77 215 164 8 1328 337 240 0 28 chr5 97490540 97490647 -55046612 + HAL1-2a_MD LINE L1 2337 2440 -584 8 1328 722 272 53 24 chr5 97491617 97491824 -55045435 + B3 SINE B2 3 215 -1 8 1328 1185 69 0 0 chr5 97491833 97491978 -55045281 + B1_Mus1 SINE Alu 2 146 -2 8 1328 198 0 0 0 chr5 97491979 97492001 -55045258 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 8 1328 1426 209 39 39 chr5 97492043 97492427 -55044832 - ORR1C2 LTR MaLR 0 384 1 8 1328 866 261 70 33 chr5 97492668 97492938 -55044321 + B4A SINE B4 1 280 -12 8 1328 388 259 112 77 chr5 97492966 97493225 -55044034 + B4A SINE B4 4 271 -21 8 1328 306 0 0 0 chr5 97493258 97493292 -55043967 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1328 420 261 182 32 chr5 97494651 97494904 -55042355 + B4 SINE B4 2 292 0 8 1328 180 200 0 0 chr5 97495157 97495202 -55042057 + GA-rich Low_complexity Low_complexity 2 46 0 8 1328 256 215 46 0 chr5 97495897 97495962 -55041297 - B1_Mur2 SINE Alu -15 134 67 8 1328 216 0 0 0 chr5 97496019 97496043 -55041216 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 8 1328 1064 82 0 46 chr5 97496121 97496135 -55041124 - B1_Mus2 SINE Alu 0 147 138 8 1328 193 29 29 29 chr5 97496135 97496170 -55041089 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1328 1064 82 0 46 chr5 97496170 97496308 -55040951 - B1_Mus2 SINE Alu -10 137 2 8 1328 784 187 98 36 chr5 97496309 97496503 -55040756 - B3 SINE B2 -7 209 4 8 1328 497 208 152 0 chr5 97497073 97497198 -55040061 - B1F SINE Alu -1 148 5 8 1328 273 309 12 0 chr5 97497208 97497289 -55039970 - ID4_ SINE ID 0 83 2 8 1328 256 202 40 110 chr5 97498295 97498395 -55038864 + L1MC4 LINE L1 6659 6751 -1291 8 1328 205 244 0 0 chr5 97498810 97498851 -55038408 + (CGTG)n Simple_repeat Simple_repeat 2 42 0 8 1328 359 347 93 15 chr5 97498858 97499127 -55038132 - B4A SINE B4 0 292 3 8 1328 366 23 0 0 chr5 97503113 97503156 -55034103 + (CGTG)n Simple_repeat Simple_repeat 1 43 0 1 1328 218 105 0 26 chr5 97503607 97503646 -55033613 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2 1328 466 265 116 0 chr5 97505323 97505470 -55031789 - RSINE1 SINE B4 0 165 2 3 1328 267 152 0 0 chr5 97505548 97505594 -55031665 + (CACG)n Simple_repeat Simple_repeat 1 46 0 4 1328 378 42 0 0 chr5 97505596 97505644 -55031615 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1328 330 124 0 0 chr5 97505788 97505842 -55031417 - B1F SINE Alu -9 140 66 6 1328 283 342 18 9 chr5 97506019 97506131 -55031128 + PB1D10 SINE Alu 5 117 0 7 1328 187 185 54 36 chr5 97507996 97508052 -55029207 + MIR3 SINE MIR 121 177 -31 8 1328 268 320 85 28 chr5 97510350 97510527 -55026732 + MER2 DNA MER2_type 121 307 -38 9 1328 470 250 19 0 chr5 97511394 97511498 -55025761 - B3 SINE B2 0 216 111 1 1328 486 286 19 7 chr5 97513367 97513522 -55023737 - RSINE1 SINE B4 -7 158 2 1 1328 333 0 0 0 chr5 97513524 97513561 -55023698 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1328 415 244 67 22 chr5 97513572 97513706 -55023553 - B4 SINE B4 -86 206 67 1 1328 183 80 0 0 chr5 97514633 97514658 -55022601 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 1 1328 234 307 126 59 chr5 97515090 97515225 -55022034 + MamSINE1 SINE tRNA 77 220 -70 1 1329 335 200 139 28 chr5 97517669 97517777 -55019482 + L1MA8 LINE L1 6160 6279 -12 1 1329 324 0 0 0 chr5 97520233 97520269 -55016990 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1329 502 161 0 0 chr5 97520372 97520453 -55016806 - ID4 SINE ID 0 83 3 1 1329 221 167 0 0 chr5 97521173 97521215 -55016044 + T-rich Low_complexity Low_complexity 1 42 0 1 1329 612 48 12 0 chr5 97521487 97521571 -55015688 + B1_Mus2 SINE Alu 62 146 -1 2 1329 201 136 45 0 chr5 97521571 97521615 -55015644 + A-rich Low_complexity Low_complexity 1 46 0 2 1329 809 166 65 0 chr5 97523004 97523143 -55014116 + B1_Mur2 SINE Alu 2 149 0 2 1329 231 180 16 16 chr5 97524317 97524379 -55012880 + (CAAA)n Simple_repeat Simple_repeat 3 64 0 2 1329 222 184 0 0 chr5 97524454 97524492 -55012767 + G-rich Low_complexity Low_complexity 1 38 0 2 1329 222 300 20 0 chr5 97525351 97525401 -55011858 + RSINE1 SINE B4 3 53 -112 2 1329 207 100 0 0 chr5 97529457 97529487 -55007772 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1329 408 40 0 0 chr5 97529516 97529566 -55007693 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1329 288 0 0 0 chr5 97529593 97529625 -55007634 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1329 285 29 0 0 chr5 97529652 97529686 -55007573 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1329 2803 45 6 0 chr5 97530003 97530333 -55006926 + IAPEY3_LTR LTR ERVK 1 332 0 2 1329 26 0 0 0 chr5 97530640 97530666 -55006593 + AT_rich Low_complexity Low_complexity 1 26 0 2 1329 703 174 114 0 chr5 97531013 97531162 -55006097 - B3 SINE B2 -9 207 42 2 1329 4105 84 55 2 chr5 97531189 97531774 -55005485 - L1_Mus4 LINE L1 -5 6631 6016 3 1329 222 395 9 0 chr5 97532017 97532126 -55005133 - PB1D10 SINE Alu 0 117 8 3 1329 193 70 45 23 chr5 97532179 97532223 -55005036 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 3 1329 469 240 47 0 chr5 97533118 97533247 -55004012 - B1_Mur1 SINE Alu -2 147 13 3 1329 207 69 0 0 chr5 97533253 97533282 -55003977 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1329 207 0 0 0 chr5 97533345 97533368 -55003891 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1329 3491 226 117 55 chr5 97535444 97536300 -55000959 + Lx7 LINE L1 6585 7449 -247 3 1329 378 0 0 0 chr5 97536300 97536342 -55000917 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1329 3491 226 117 55 chr5 97536342 97536488 -55000771 + Lx7 LINE L1 7450 7649 -47 3 1329 293 297 46 73 chr5 97536869 97536978 -55000281 + PB1D10 SINE Alu 1 106 -11 3 1329 1047 228 14 28 chr5 97538201 97538418 -54998841 - B3 SINE B2 -1 215 2 3 1329 205 286 154 39 chr5 97539662 97539844 -54997415 + L2c LINE L2 3224 3426 0 3 1329 205 232 0 0 chr5 97540023 97540079 -54997180 + MIRc SINE MIR 187 242 -26 4 1329 26 57 0 41 chr5 97540470 97540543 -54996716 + GC_rich Low_complexity Low_complexity 1 70 0 4 1329 265 206 27 73 chr5 97540857 97540967 -54996292 + (CCCCG)n Simple_repeat Simple_repeat 5 109 0 4 1329 25 0 0 0 chr5 97541245 97541270 -54995989 + AT_rich Low_complexity Low_complexity 1 25 0 4 1329 447 253 189 17 chr5 97541679 97541980 -54995279 - Lx7 LINE L1 -16 7680 7328 4 1329 2944 133 20 128 chr5 97541940 97542597 -54994662 + Lx4B LINE L1 5086 5671 -206 4 1329 2079 205 29 68 chr5 97542597 97542890 -54994369 + RMER16 LTR ERVK 1 291 -242 4 1329 2508 91 80 13 chr5 97542890 97543279 -54993980 - L1_Mus3 LINE L1 -3 6635 6221 4 1329 2079 205 29 68 chr5 97543279 97543540 -54993719 + RMER16 LTR ERVK 292 533 0 4 1329 2774 138 46 17 chr5 97543540 97544020 -54993239 + Lx4B LINE L1 5672 6165 -893 4 1329 581 203 42 7 chr5 97544774 97544909 -54992350 - L1_Mur3 LINE L1 -634 5657 5506 4 1329 344 278 127 54 chr5 97544917 97545138 -54992121 - L1_Mur3 LINE L1 -503 5377 5141 4 1329 372 270 100 0 chr5 97545138 97545238 -54992021 + PB1D9 SINE Alu 2 111 -9 4 1329 698 131 34 74 chr5 97545280 97545428 -54991831 - Lx7 LINE L1 0 7696 7555 5 1329 1939 196 163 11 chr5 97545430 97545951 -54991308 - Lx7 LINE L1 -569 7127 6528 4 1329 989 40 8 0 chr5 97545951 97546077 -54991182 + (TCTA)n Simple_repeat Simple_repeat 4 130 0 5 1329 6690 166 79 92 chr5 97546077 97547220 -54990039 - L1_Mur3 LINE L1 -2881 2999 1765 5 1329 315 220 23 30 chr5 97547220 97547266 -54989993 - RMER17A LTR ERVK -291 460 414 5 1329 1416 79 32 0 chr5 97547266 97547455 -54989804 + B2_Mm2 SINE B2 1 195 0 5 1329 315 220 23 30 chr5 97547455 97547539 -54989720 - RMER17A LTR ERVK -338 413 331 5 1329 6690 204 88 59 chr5 97547539 97548758 -54988501 - L1_Mur3 LINE L1 -4116 1764 482 5 1329 4705 299 126 26 chr5 97548767 97550487 -54986772 - L1_Mur3 LINE L1 -774 5106 3188 5 1329 662 252 0 0 chr5 97550487 97550634 -54986625 - B1_Mur3 SINE Alu -2 147 1 5 1329 4705 299 126 26 chr5 97550634 97552059 -54985200 - L1_Mur3 LINE L1 -2693 3187 1647 5 1329 223 282 0 45 chr5 97552334 97552423 -54984836 - PB1D10 SINE Alu -2 115 31 5 1329 268 244 51 0 chr5 97552556 97552634 -54984625 - PB1D7 SINE Alu -34 86 5 5 1329 298 206 32 0 chr5 97552773 97552836 -54984423 - L1_Mur3 LINE L1 -3107 2773 2709 6 1329 203 167 0 0 chr5 97553146 97553188 -54984071 + A-rich Low_complexity Low_complexity 1 42 0 6 1329 415 243 19 0 chr5 97553190 97553293 -54983966 + PB1D7 SINE Alu 3 107 -13 6 1329 580 278 66 16 chr5 97554714 97554897 -54982362 + B4A SINE B4 84 275 -17 6 1329 534 75 0 0 chr5 97554909 97554989 -54982270 + (CA)n Simple_repeat Simple_repeat 2 81 0 6 1329 567 263 69 29 chr5 97556306 97556513 -54980746 - B3 SINE B2 -1 215 1 6 1329 1159 82 37 32 chr5 97556943 97557131 -54980128 + L1_Mus2 LINE L1 6376 6564 -2 6 1329 23 68 0 0 chr5 97557172 97557216 -54980043 + AT_rich Low_complexity Low_complexity 1 44 0 6 1329 187 323 38 57 chr5 97557367 97557472 -54979787 + L2b LINE L2 3240 3342 -33 6 1329 1111 93 91 23 chr5 97557993 97558168 -54979091 + B2_Mm2 SINE B2 1 187 -8 6 1329 28 29 0 0 chr5 97558204 97558239 -54979020 + AT_rich Low_complexity Low_complexity 1 35 0 7 1329 365 227 0 0 chr5 97558285 97558351 -54978908 - PB1D7 SINE Alu -13 107 42 7 1329 225 132 0 0 chr5 97558482 97558520 -54978739 + (TA)n Simple_repeat Simple_repeat 1 38 0 7 1329 216 0 0 0 chr5 97561070 97561094 -54976165 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1329 550 341 115 7 chr5 97561196 97561474 -54975785 + MLT1C LTR MaLR 65 372 -95 7 1329 415 60 30 0 chr5 97562197 97562264 -54974995 + (TA)n Simple_repeat Simple_repeat 2 70 0 7 1329 410 290 0 91 chr5 97562901 97563011 -54974248 - RSINE1 SINE B4 -42 123 24 7 1329 585 76 0 0 chr5 97563906 97563985 -54973274 + (GA)n Simple_repeat Simple_repeat 1 79 0 7 1329 237 33 0 0 chr5 97564648 97564678 -54972581 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 7 1329 633 359 61 23 chr5 97564943 97565261 -54971998 + LTR16D LTR ERVL 263 593 -82 7 1329 456 312 29 29 chr5 97565205 97565380 -54971879 + MTC LTR MaLR 246 420 -1 8 1329 977 279 14 7 chr5 97565414 97565699 -54971560 - B4 SINE B4 -4 288 2 8 1329 316 324 87 9 chr5 97566048 97566394 -54970865 - L1MEc LINE L1 -1480 4839 4467 8 1329 755 260 19 34 chr5 97566580 97566787 -54970472 - B3 SINE B2 -11 205 2 8 1329 360 0 0 0 chr5 97566809 97566849 -54970410 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1329 233 214 0 18 chr5 97567003 97567060 -54970199 - L1MC LINE L1 -2185 3961 3906 8 1329 551 284 116 25 chr5 97567181 97567535 -54969724 - MLT1B LTR MaLR 0 390 5 8 1329 632 222 22 0 chr5 97567759 97567894 -54969365 - Lx8 LINE L1 -758 6715 6578 8 1329 371 326 49 7 chr5 97567901 97568043 -54969216 - L1MEc LINE L1 -2567 3752 3605 8 1329 851 330 136 44 chr5 97568032 97569050 -54968209 - L1MEc LINE L1 -5029 1371 261 8 1329 806 317 141 16 chr5 97569210 97569515 -54967744 - Tigger7 DNA MER2_type -2144 347 5 8 1329 183 354 12 12 chr5 97569518 97569598 -54967661 - MIR SINE MIR -2 260 181 8 1329 547 228 171 12 chr5 97569647 97569811 -54967448 - B3A SINE B2 -7 191 2 9 1329 194 191 21 0 chr5 97570069 97570116 -54967143 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1329 281 243 98 9 chr5 97570267 97570379 -54966880 - Lx9 LINE L1 -5 7639 7518 9 1329 1810 155 49 17 chr5 97570735 97571083 -54966176 + RLTR15 LTR ERVK 1 359 0 9 1329 717 324 59 18 chr5 97572368 97572707 -54964552 + MLT1D LTR MaLR 5 357 -148 9 1329 746 314 65 32 chr5 97572963 97573210 -54964049 + B4A SINE B4 27 281 -11 9 1329 375 60 0 0 chr5 97573221 97573271 -54963988 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1329 1690 163 85 58 chr5 97573735 97574036 -54963223 - ORR1D1 LTR MaLR 0 374 63 9 1329 3213 50 0 20 chr5 97574036 97574444 -54962815 - MTB LTR MaLR 0 400 1 9 1329 1690 163 85 58 chr5 97574444 97574506 -54962753 - ORR1D1 LTR MaLR -312 62 1 9 1329 254 29 29 0 chr5 97574590 97574625 -54962634 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 9 1329 44 20 0 0 chr5 97578987 97579038 -54958221 + AT_rich Low_complexity Low_complexity 1 51 0 1 1329 3447 51 2 5 chr5 97579334 97579768 -54957491 - L1Md_F2 LINE L1 -12 6570 6138 1 1329 3410 83 8 21 chr5 97579790 97580271 -54956988 - MT2C_Mm LTR ERVL 0 475 1 1 1329 296 262 50 22 chr5 97580656 97580753 -54956506 - PB1D10 SINE Alu -16 104 3 1 1329 1203 251 117 11 chr5 97580939 97581297 -54955962 + MTD LTR MaLR 1 396 -23 1 1329 186 317 60 12 chr5 97581911 97581994 -54955265 + MIRb SINE MIR 45 131 -137 1 1329 897 282 108 43 chr5 97583085 97583615 -54953644 + L1_Mur3 LINE L1 5304 5867 -13 1 1329 34 24 0 0 chr5 97584175 97584216 -54953043 + AT_rich Low_complexity Low_complexity 1 41 0 1 1329 312 287 43 15 chr5 97585069 97585289 -54951970 + L1M3 LINE L1 5248 5488 -680 1 1329 241 235 59 39 chr5 97585274 97585376 -54951883 + L1M5 LINE L1 5426 5529 -633 1 1329 378 290 152 8 chr5 97585589 97585853 -54951406 - L1M3 LINE L1 -1661 4479 4178 1 1329 740 147 7 0 chr5 97585853 97585989 -54951270 + CT-rich Low_complexity Low_complexity 1 137 0 1 1329 1895 267 100 25 chr5 97585990 97587049 -54950210 - L1M3 LINE L1 -1987 4153 3015 1 1329 5664 156 25 7 chr5 97587046 97588219 -54949040 - Lx LINE L1 0 6654 5453 1 1329 276 303 36 12 chr5 97588226 97588393 -54948866 - L1M3 LINE L1 -3103 3037 2867 1 1329 335 341 119 9 chr5 97588394 97588613 -54948646 - L1M5 LINE L1 -968 5178 4936 1 1329 586 258 79 30 chr5 97588726 97588747 -54948512 - B3A SINE B2 -26 172 150 1 1329 216 0 0 0 chr5 97588747 97588771 -54948488 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1329 586 258 79 30 chr5 97588771 97588913 -54948346 - B3A SINE B2 -49 149 2 1 1329 232 250 70 41 chr5 97588995 97589166 -54948093 - L1M5 LINE L1 -1726 4420 4245 1 1329 671 331 28 17 chr5 97589266 97589789 -54947470 - L1_Mur3 LINE L1 -2468 3675 3140 1 1329 456 19 0 0 chr5 97589853 97589906 -54947353 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1329 671 285 41 59 chr5 97589909 97590301 -54946958 - L1_Mur3 LINE L1 -3193 2687 2303 1 1329 371 21 21 0 chr5 97591094 97591142 -54946117 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1329 467 142 0 26 chr5 97591152 97591268 -54945991 + (TG)n Simple_repeat Simple_repeat 1 113 0 1 1329 195 69 0 0 chr5 97591294 97591323 -54945936 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1329 461 298 138 5 chr5 97593227 97593340 -54943919 - MTEb LTR MaLR -23 356 223 1 1329 600 40 0 0 chr5 97593340 97593415 -54943844 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 1329 461 240 280 19 chr5 97593415 97593595 -54943664 - MTEb LTR MaLR -157 222 1 1 1329 303 71 0 0 chr5 97593887 97593929 -54943330 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1 1329 237 323 51 119 chr5 97595150 97595326 -54941933 - MER63B DNA AcHobo 0 436 273 1 1329 41 58 0 0 chr5 97596011 97596080 -54941179 + AT_rich Low_complexity Low_complexity 1 69 0 1 1329 566 268 137 0 chr5 97597940 97598130 -54939129 + B3 SINE B2 1 216 0 1 1329 236 359 67 19 chr5 97598553 97598658 -54938601 + L2b LINE L2 3247 3356 -19 1 1329 228 288 108 14 chr5 97598688 97598762 -54938497 - ID2 SINE ID -1 82 2 1 1329 357 62 0 0 chr5 97598842 97598890 -54938369 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1329 1887 159 82 9 chr5 97598996 97599326 -54937933 - ORR1B1 LTR MaLR 0 394 41 1 1329 322 278 117 138 chr5 97599643 97599839 -54937420 + RMER30 DNA MER1_type 5 196 -6 1 1329 601 134 9 9 chr5 97600479 97600592 -54936667 + (TA)n Simple_repeat Simple_repeat 2 114 0 1 1329 458 247 0 0 chr5 97600611 97600708 -54936551 - Lx5 LINE L1 -678 6372 6276 1 1329 468 0 0 0 chr5 97600804 97600856 -54936403 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 1329 286 319 64 0 chr5 97601122 97601263 -54935996 - Lx9 LINE L1 -247 7397 7248 1 1329 477 335 49 89 chr5 97601255 97601783 -54935476 + Lx8 LINE L1 6894 7400 -73 1 1329 250 176 39 0 chr5 97601938 97601989 -54935270 + B3A SINE B2 3 55 -143 1 1329 1117 290 22 44 chr5 97601989 97602400 -54934859 + Lx9 LINE L1 7017 7418 -226 1 1329 545 96 0 11 chr5 97602401 97602496 -54934763 + (CA)n Simple_repeat Simple_repeat 1 94 0 1 1329 26 0 0 0 chr5 97602817 97602843 -54934416 + AT_rich Low_complexity Low_complexity 1 26 0 1 1329 545 217 64 83 chr5 97603455 97603611 -54933648 + RSINE1 SINE B4 13 165 0 1 1329 435 19 0 0 chr5 97604020 97604072 -54933187 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 1 1329 6546 150 113 8 chr5 97604074 97605431 -54931828 - Lx4B LINE L1 -11 7047 5518 1 1329 5672 131 12 7 chr5 97605426 97606391 -54930868 + Lx4B LINE L1 4540 5509 -368 1 1329 21 0 0 0 chr5 97606943 97606964 -54930295 + AT_rich Low_complexity Low_complexity 1 21 0 1 1329 412 272 93 29 chr5 97607123 97607263 -54929996 - MIR3 SINE MIR -5 203 55 1 1329 588 158 0 0 chr5 97607423 97607647 -54929612 + (TG)n Simple_repeat Simple_repeat 1 224 0 1 1329 421 242 263 8 chr5 97607647 97607780 -54929479 - B4A SINE B4 0 292 126 1 1329 318 227 54 68 chr5 97607696 97607872 -54929387 + MTC LTR MaLR 243 419 -2 1 1329 24 53 0 0 chr5 97608102 97608140 -54929119 + AT_rich Low_complexity Low_complexity 1 38 0 1 1329 1044 329 22 25 chr5 97608363 97608684 -54928575 + MTE2b LTR MaLR 1 320 -59 1 1329 353 20 0 38 chr5 97608693 97608746 -54928513 - B1_Mus2 SINE Alu -1 146 96 1 1329 2320 154 40 12 chr5 97608934 97609336 -54927923 - MTC LTR MaLR -8 413 1 1 1329 195 42 0 0 chr5 97609600 97609624 -54927635 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1329 393 238 12 0 chr5 97609743 97609823 -54927436 + B3A SINE B2 17 97 -101 1 1329 27 0 0 0 chr5 97609873 97609900 -54927359 + AT_rich Low_complexity Low_complexity 1 27 0 1 1329 405 0 0 0 chr5 97610629 97610674 -54926585 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1 1329 1279 303 37 35 chr5 97610680 97611231 -54926028 - Lx6 LINE L1 -56 7404 6486 1 1329 453 214 119 21 chr5 97612302 97612445 -54924814 - RSINE1 SINE B4 0 165 9 1 1329 293 377 63 1 chr5 97612472 97612644 -54924615 + MIR SINE MIR 3 200 -68 1 1329 207 69 0 0 chr5 97612766 97612795 -54924464 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1329 219 275 129 14 chr5 97612995 97613065 -54924194 + PB1D10 SINE Alu 32 109 -8 1 1329 369 62 0 0 chr5 97616282 97616330 -54920929 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1329 397 295 131 42 chr5 97617350 97617541 -54919718 - MER63A DNA AcHobo 0 210 3 1 1329 219 260 172 82 chr5 97617546 97617680 -54919579 - MER91A DNA Tip100 -16 180 35 1 1329 24 0 0 0 chr5 97619084 97619108 -54918151 + AT_rich Low_complexity Low_complexity 1 24 0 1 1329 279 114 0 0 chr5 97619175 97619219 -54918040 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1 1329 209 264 0 36 chr5 97620063 97620118 -54917141 + polypyrimidine Low_complexity Low_complexity 1 53 0 1 1329 393 307 97 46 chr5 97620134 97620332 -54916927 + MIR SINE MIR 18 231 -37 1 1329 323 344 8 39 chr5 97620419 97620546 -54916713 + ID_B1 SINE B4 95 217 -7 1 1329 543 257 0 0 chr5 97621071 97621242 -54916017 + (TG)n Simple_repeat Simple_repeat 2 172 0 1 1329 24 32 0 0 chr5 97622735 97622766 -54914493 + AT_rich Low_complexity Low_complexity 1 31 0 1 1329 1216 61 0 0 chr5 97622766 97622914 -54914345 - B1_Mus1 SINE Alu 0 148 1 1 1329 253 136 68 0 chr5 97624901 97624960 -54912299 + (CATATA)n Simple_repeat Simple_repeat 5 67 0 1 1329 210 71 0 0 chr5 97626281 97626309 -54910950 + (ATG)n Simple_repeat Simple_repeat 2 29 0 1 1329 185 342 143 26 chr5 97626615 97626804 -54910455 + L2a LINE L2 2937 3147 -279 1 1329 342 0 0 0 chr5 97626830 97626868 -54910391 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1329 296 333 57 36 chr5 97626934 97627003 -54910256 + Arthur1B DNA Tip100 1028 1095 -130 1 1329 414 0 0 0 chr5 97627003 97627049 -54910210 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1329 342 0 0 0 chr5 97627049 97627086 -54910173 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1329 296 333 57 36 chr5 97627086 97627208 -54910051 + Arthur1B DNA Tip100 1096 1223 -2 1 1329 218 344 49 84 chr5 97627468 97627611 -54909648 + L2a LINE L2 3277 3414 -12 1 1329 655 282 28 32 chr5 97627611 97627827 -54909432 + B4A SINE B4 1 215 -77 1 1329 925 156 0 0 chr5 97628155 97628290 -54908969 - B1_Mus1 SINE Alu -7 141 7 1 1329 2742 107 78 7 chr5 97628390 97628813 -54908446 + Lx LINE L1 6199 6651 -3 1 1329 228 35 0 0 chr5 97632134 97632163 -54905096 + (CCCCCG)n Simple_repeat Simple_repeat 2 30 0 1 1329 601 245 40 58 chr5 97632537 97632568 -54904691 + MTD LTR MaLR 18 48 -371 1 1329 1849 171 16 63 chr5 97632568 97632949 -54904310 - ORR1B2 LTR MaLR 0 367 5 1 1329 601 245 40 58 chr5 97632949 97633090 -54904169 + MTD LTR MaLR 49 187 -232 1 1329 933 113 0 0 chr5 97633100 97633241 -54904018 + (TC)n Simple_repeat Simple_repeat 2 142 0 1 1329 539 96 0 12 chr5 97633242 97633326 -54903933 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 1 1329 797 227 113 0 chr5 97633328 97633531 -54903728 + MTD LTR MaLR 194 419 0 1 1329 306 271 224 20 chr5 97633749 97633896 -54903363 - MER2B DNA MER2_type -2 334 158 1 1329 240 149 0 0 chr5 97634334 97634381 -54902878 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1329 604 273 121 0 chr5 97634762 97634927 -54902332 + B3 SINE B2 2 186 -30 1 1329 252 0 0 0 chr5 97634927 97634955 -54902304 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1329 1161 228 31 24 chr5 97635912 97636262 -54900997 - RMER10A LTR ERVL 0 442 1 1 1329 3511 115 102 7 chr5 97636347 97636916 -54900343 + Lx4A LINE L1 6434 7056 -2 1 1329 199 312 47 0 chr5 97637210 97637274 -54899985 + MIRm SINE MIR 202 268 -8 1 1329 346 229 10 0 chr5 97637278 97637374 -54899885 + Lx5 LINE L1 6943 7039 -11 1 1329 249 163 0 0 chr5 97638823 97638872 -54898387 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1329 316 257 51 34 chr5 97639005 97639122 -54898137 - L1MEg LINE L1 -4083 2001 1883 1 1329 201 39 0 0 chr5 97639122 97639148 -54898111 + (TTTC)n Simple_repeat Simple_repeat 4 29 0 1 1329 561 15 0 0 chr5 97639151 97639217 -54898042 + (CCTA)n Simple_repeat Simple_repeat 2 67 0 1 1329 210 71 0 0 chr5 97639307 97639335 -54897924 + (TCC)n Simple_repeat Simple_repeat 2 29 0 1 1329 189 0 0 0 chr5 97639498 97639519 -54897740 + (CATGT)n Simple_repeat Simple_repeat 5 25 0 2 1329 762 275 63 138 chr5 97640143 97640540 -54896719 - MTE2a LTR MaLR -1 378 12 2 1329 211 298 12 24 chr5 97641290 97641463 -54895796 + (CATA)n Simple_repeat Simple_repeat 1 170 0 2 1329 2458 162 60 12 chr5 97641795 97642275 -54894984 - Lx2B LINE L1 -5 6995 6493 2 1329 308 272 56 0 chr5 97642891 97643016 -54894243 - L1MA8 LINE L1 -48 6243 6112 2 1329 1004 243 9 0 chr5 97643117 97643327 -54893932 - B3 SINE B2 0 216 5 2 1329 589 189 82 22 chr5 97643409 97643544 -54893715 - B1_Mur1 SINE Alu -6 143 1 2 1329 480 77 0 0 chr5 97644221 97644286 -54892973 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 2 1329 1208 127 21 0 chr5 97644286 97644475 -54892784 - B2_Mm1t SINE B2 0 193 1 2 1329 334 196 19 0 chr5 97644520 97644627 -54892632 + (TG)n Simple_repeat Simple_repeat 1 109 0 2 1329 470 256 15 74 chr5 97644649 97644784 -54892475 - B4A SINE B4 -14 278 152 2 1329 22 0 0 0 chr5 97645039 97645061 -54892198 + AT_rich Low_complexity Low_complexity 1 22 0 2 1329 411 249 20 15 chr5 97645151 97645347 -54891912 - L1MEc LINE L1 -3110 3209 3013 2 1329 378 271 121 57 chr5 97645874 97646170 -54891089 - L1MEc LINE L1 -4780 1635 1303 2 1329 196 345 84 56 chr5 97646418 97646596 -54890663 - L2b LINE L2 -251 3136 2954 2 1330 302 352 0 9 chr5 97648767 97648873 -54888386 + MIRc SINE MIR 129 233 -35 2 1330 21 36 0 0 chr5 97649604 97649632 -54887627 + AT_rich Low_complexity Low_complexity 1 28 0 2 1330 593 183 23 0 chr5 97650513 97650644 -54886615 + CT-rich Low_complexity Low_complexity 5 138 0 2 1330 261 0 0 0 chr5 97650889 97650918 -54886341 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1330 4856 169 58 5 chr5 97652863 97653804 -54883455 + Lx2B LINE L1 6010 7000 0 2 1330 1578 239 26 62 chr5 97654043 97654439 -54882820 - MTD LTR MaLR -9 410 20 2 1330 225 0 0 0 chr5 97654439 97654464 -54882795 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 2 1330 1578 239 26 62 chr5 97654464 97654490 -54882769 - MTD LTR MaLR -400 19 3 2 1330 277 0 100 33 chr5 97655848 97655908 -54881351 + (TTTTG)n Simple_repeat Simple_repeat 3 66 0 2 1330 547 299 14 38 chr5 97656058 97656223 -54881036 + B3A SINE B2 15 176 -22 2 1330 264 100 0 0 chr5 97656228 97656268 -54880991 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1330 3530 244 82 39 chr5 97656610 97657692 -54879567 + Lx9 LINE L1 6355 7470 -174 2 1330 405 0 0 0 chr5 97657692 97657737 -54879522 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1330 3530 244 82 39 chr5 97657737 97657845 -54879414 + Lx9 LINE L1 7471 7597 -47 2 1330 647 261 26 69 chr5 97658541 97658730 -54878529 + B3A SINE B2 1 181 -17 2 1330 368 173 40 7 chr5 97658741 97658892 -54878367 + (CA)n Simple_repeat Simple_repeat 1 156 0 2 1330 39 38 0 0 chr5 97658892 97658945 -54878314 + AT_rich Low_complexity Low_complexity 1 53 0 2 1330 462 36 0 0 chr5 97659211 97659267 -54877992 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1330 524 15 15 0 chr5 97659470 97659535 -54877724 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 2 1330 266 256 42 62 chr5 97660477 97660573 -54876686 + MLT1I LTR MaLR 22 115 -296 2 1330 211 156 9 60 chr5 97660872 97660988 -54876271 + A-rich Low_complexity Low_complexity 4 113 0 2 1330 1951 218 39 22 chr5 97661989 97662401 -54874858 - MTD LTR MaLR 0 419 1 2 1330 183 80 0 0 chr5 97664126 97664151 -54873108 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 2 1330 361 266 109 0 chr5 97664157 97664285 -54872974 + B1F1 SINE Alu 1 142 -7 2 1330 634 282 35 32 chr5 97664351 97664662 -54872597 + L1MB7 LINE L1 5709 6020 -164 2 1330 32 57 0 0 chr5 97664728 97664781 -54872478 + AT_rich Low_complexity Low_complexity 1 53 0 2 1330 212 59 29 0 chr5 97666578 97666612 -54870647 + (CAAAC)n Simple_repeat Simple_repeat 5 39 0 2 1330 320 299 18 45 chr5 97667373 97667485 -54869774 + RSINE1 SINE B4 57 165 0 2 1330 453 19 0 0 chr5 97668948 97669002 -54868257 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1330 488 347 13 32 chr5 97669064 97669219 -54868040 - B4A SINE B4 0 292 141 2 1330 528 178 7 169 chr5 97669261 97669403 -54867856 + PB1D9 SINE Alu 2 120 0 2 1330 853 181 15 8 chr5 97669403 97669676 -54867583 + GA-rich Low_complexity Low_complexity 1 275 0 2 1330 2275 133 17 6 chr5 97669936 97670291 -54866968 + ORR1B2 LTR MaLR 1 359 -8 2 1330 200 217 43 0 chr5 97671571 97671617 -54865642 - L2b LINE L2 0 3375 3328 2 1330 869 250 101 50 chr5 97671704 97672196 -54865063 - RMER4B LTR ERVK -14 571 17 2 1330 813 310 48 58 chr5 97672713 97673025 -54864234 + MER2 DNA MER2_type 6 314 -31 2 1330 284 145 58 25 chr5 97673113 97673233 -54864026 + (TA)n Simple_repeat Simple_repeat 1 124 0 2 1330 615 292 58 61 chr5 97673362 97673639 -54863620 - MLT1E1A LTR MaLR -24 656 381 2 1330 185 231 38 19 chr5 97674400 97674453 -54862806 + L2a LINE L2 3287 3340 -86 2 1330 550 247 122 128 chr5 97674493 97674869 -54862390 + MTE2a LTR MaLR 6 379 0 2 1330 1019 168 5 10 chr5 97674926 97675119 -54862140 + Lx2 LINE L1 6806 6997 0 2 1330 277 43 21 21 chr5 97675121 97675169 -54862090 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 2 1330 6036 9 0 0 chr5 97675871 97676504 -54860755 + L1Md_T LINE L1 5942 6574 -8 2 1330 33133 79 31 6 chr5 97677860 97683126 -54854133 + L1Md_F2 LINE L1 203 5585 -298 2 1330 7385 105 3 18 chr5 97683128 97684138 -54853121 + L1Md_F2 LINE L1 5588 6582 0 2 1330 308 0 71 0 chr5 97684212 97684254 -54853005 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 2 1330 249 57 0 0 chr5 97686524 97686559 -54850700 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1330 468 48 0 0 chr5 97687810 97687873 -54849386 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 2 1330 282 369 50 28 chr5 97689587 97689768 -54847491 - ORR1E LTR MaLR -169 190 6 2 1330 3292 47 28 10 chr5 97690043 97690432 -54846827 + MTA_Mm LTR MaLR 1 396 0 2 1330 21 57 0 0 chr5 97690746 97690781 -54846478 + AT_rich Low_complexity Low_complexity 1 35 0 2 1330 613 250 96 6 chr5 97690969 97691126 -54846133 + B3A SINE B2 1 171 -27 2 1330 187 111 27 27 chr5 97691623 97691660 -54845599 + L2 LINE L2 1477 1513 -1906 2 1330 262 309 24 0 chr5 97691718 97691802 -54845457 + L2a LINE L2 3336 3421 -5 2 1330 21 0 0 0 chr5 97693130 97693151 -54844108 + AT_rich Low_complexity Low_complexity 1 21 0 2 1330 1184 95 0 0 chr5 97693181 97693329 -54843930 + B1_Mus1 SINE Alu 1 148 0 2 1330 801 31 0 0 chr5 97693339 97693435 -54843824 + (GGAGA)n Simple_repeat Simple_repeat 2 97 0 2 1330 609 257 60 66 chr5 97693584 97693767 -54843492 + 7SK RNA RNA 16 197 -134 2 1330 231 217 0 0 chr5 97695031 97695077 -54842182 + 7SK RNA RNA 195 240 -91 2 1330 261 0 0 0 chr5 97695363 97695392 -54841867 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1330 522 0 0 0 chr5 97695392 97695450 -54841809 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1330 387 60 0 0 chr5 97695527 97695577 -54841682 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1330 539 363 97 12 chr5 97695577 97695825 -54841434 - B4A SINE B4 -22 270 2 2 1330 215 178 22 0 chr5 97696110 97696155 -54841104 - B4 SINE B4 -245 47 2 2 1330 29 60 0 0 chr5 97696505 97696555 -54840704 + AT_rich Low_complexity Low_complexity 1 50 0 2 1330 23 33 0 0 chr5 97697411 97697441 -54839818 + AT_rich Low_complexity Low_complexity 1 30 0 2 1330 1814 113 14 47 chr5 97697973 97698045 -54839214 + Lx3C LINE L1 6689 6753 -223 2 1330 186 43 0 0 chr5 97698045 97698068 -54839191 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 2 1330 1814 113 14 47 chr5 97698068 97698291 -54838968 + Lx3C LINE L1 6754 6974 -2 2 1330 206 266 0 30 chr5 97698373 97698439 -54838820 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 2 1330 210 37 0 0 chr5 97699391 97699418 -54837841 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2 1330 1749 183 49 35 chr5 97700779 97701124 -54836135 + ORR1B1 LTR MaLR 1 350 -44 2 1330 1515 12 0 0 chr5 97701158 97701325 -54835934 + L1Md_A LINE L1 5420 5586 -297 2 1330 9618 3 0 0 chr5 97701325 97702321 -54834938 + L1Md_A LINE L1 5587 6582 0 2 1330 216 0 0 0 chr5 97702348 97702372 -54834887 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1330 280 114 68 0 chr5 97702372 97702416 -54834843 + ORR1B1 LTR MaLR 340 386 -8 2 1330 8224 170 105 75 chr5 97702420 97704326 -54832933 + ORR1B1-int LTR MaLR 1 1963 0 2 1330 2372 120 63 39 chr5 97704326 97704709 -54832550 + ORR1B1 LTR MaLR 1 392 -2 2 1330 21 0 0 0 chr5 97704914 97704935 -54832324 + AT_rich Low_complexity Low_complexity 1 21 0 2 1330 717 213 0 0 chr5 97705175 97705510 -54831749 + (TG)n Simple_repeat Simple_repeat 1 335 0 2 1330 306 257 69 90 chr5 97708007 97708195 -54829064 - B2_Mm2 SINE B2 -9 186 3 2 1330 411 137 0 0 chr5 97708897 97708970 -54828289 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1330 543 81 0 0 chr5 97708969 97709055 -54828204 + (GA)n Simple_repeat Simple_repeat 1 86 0 2 1330 343 278 72 26 chr5 97709122 97709310 -54827949 - L1MA4A LINE L1 -287 6013 5819 2 1330 950 126 0 14 chr5 97709335 97709826 -54827433 + (TG)n Simple_repeat Simple_repeat 1 483 0 2 1330 473 106 0 0 chr5 97710260 97710326 -54826933 - ORR1A4 LTR MaLR 0 329 264 2 1330 261 0 0 0 chr5 97710327 97710356 -54826903 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2 1330 306 0 0 0 chr5 97710372 97710406 -54826853 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2 1330 631 243 15 29 chr5 97710430 97710645 -54826614 - Lx3C LINE L1 0 6997 6777 2 1330 1696 129 6 95 chr5 97710645 97710982 -54826277 - ORR1A4 LTR MaLR -57 327 1 2 1330 354 183 0 0 chr5 97711785 97711856 -54825403 + (TTCA)n Simple_repeat Simple_repeat 3 73 0 2 1330 605 238 15 30 chr5 97711984 97712118 -54825141 + B1_Mur1 SINE Alu 2 133 -16 2 1330 209 108 27 0 chr5 97712118 97712155 -54825104 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1330 181 309 87 31 chr5 97712463 97712590 -54824669 - MIRb SINE MIR -47 221 88 2 1330 217 382 121 6 chr5 97713575 97713741 -54823518 - MIR3 SINE MIR -3 205 21 2 1330 367 329 114 55 chr5 97713971 97714190 -54823069 + MLT1D LTR MaLR 238 469 -36 3 1330 400 333 0 0 chr5 97714893 97714995 -54822264 + RSINE1 SINE B4 57 158 -7 3 1330 195 129 0 0 chr5 97714995 97715026 -54822233 + (CATA)n Simple_repeat Simple_repeat 4 34 0 3 1330 1632 326 87 16 chr5 97715186 97715941 -54821318 - Lx8 LINE L1 -146 7327 6519 3 1330 486 75 0 0 chr5 97716060 97716127 -54821132 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1330 315 0 0 0 chr5 97716126 97716161 -54821098 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 1330 1183 312 67 40 chr5 97716161 97716179 -54821080 - Lx8 LINE L1 -1284 6189 6172 3 1330 279 0 0 0 chr5 97716179 97716210 -54821049 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1330 1501 284 51 51 chr5 97716210 97717029 -54820230 - Lx8 LINE L1 -1302 6171 5353 3 1330 4447 87 0 0 chr5 97717302 97717855 -54819404 - L1_Mus2 LINE L1 -1 6565 6013 3 1330 738 259 80 73 chr5 97717922 97718209 -54819050 + B4A SINE B4 4 292 0 3 1330 614 110 0 20 chr5 97718211 97718313 -54818946 + (CACG)n Simple_repeat Simple_repeat 1 100 0 3 1330 563 147 10 0 chr5 97719136 97719238 -54818021 + GA-rich Low_complexity Low_complexity 1 103 0 3 1330 219 276 146 88 chr5 97719628 97719737 -54817522 + MIR SINE MIR 35 163 -105 3 1330 380 284 111 8 chr5 97719737 97719854 -54817405 + B1F SINE Alu 3 131 -18 3 1330 192 276 146 88 chr5 97719854 97719915 -54817344 + MIRc SINE MIR 164 217 -51 3 1330 251 276 67 22 chr5 97719959 97720048 -54817211 - L2b LINE L2 -17 3358 3266 3 1330 819 0 0 0 chr5 97720657 97720748 -54816511 + (TTC)n Simple_repeat Simple_repeat 1 91 0 3 1330 781 300 40 63 chr5 97720775 97721074 -54816185 - B4 SINE B4 0 292 1 3 1330 972 41 0 0 chr5 97721509 97721630 -54815629 + (TCCC)n Simple_repeat Simple_repeat 4 124 0 3 1330 844 36 18 0 chr5 97721631 97721743 -54815516 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 3 1330 329 301 0 35 chr5 97721926 97722095 -54815164 - B3 SINE B2 0 198 1 3 1330 387 0 0 0 chr5 97722981 97723024 -54814235 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1330 501 288 58 0 chr5 97723484 97723623 -54813636 - B1F2 SINE Alu 0 149 3 3 1330 448 300 127 31 chr5 97724640 97724932 -54812327 + MLT1B LTR MaLR 69 388 -2 3 1330 216 0 0 0 chr5 97725116 97725140 -54812119 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1330 21 0 0 0 chr5 97725813 97725834 -54811425 + AT_rich Low_complexity Low_complexity 1 21 0 3 1330 1237 68 17 0 chr5 97726602 97726778 -54810481 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 3 1330 406 360 36 40 chr5 97727039 97727288 -54809971 + MIR SINE MIR 11 258 -4 3 1330 1376 50 0 11 chr5 97727517 97727699 -54809560 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1330 343 183 0 24 chr5 97727699 97727772 -54809487 + GA-rich Low_complexity Low_complexity 14 85 0 3 1330 224 343 14 63 chr5 97729356 97729499 -54807760 + MIRb SINE MIR 105 240 -28 3 1330 337 277 17 17 chr5 97731316 97731418 -54805841 - B4 SINE B4 -18 274 77 3 1330 243 184 33 44 chr5 97731418 97731509 -54805750 + (TATATG)n Simple_repeat Simple_repeat 3 92 0 3 1330 801 246 92 60 chr5 97731625 97731906 -54805353 - B4 SINE B4 -2 290 1 3 1330 180 288 17 17 chr5 97731911 97731971 -54805288 + L2c LINE L2 3268 3327 -60 3 1330 1401 227 152 77 chr5 97732215 97732688 -54804571 - MT2B LTR ERVL -1 600 87 3 1330 243 0 0 0 chr5 97732688 97732715 -54804544 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1330 1401 227 152 77 chr5 97732715 97732799 -54804460 - MT2B LTR ERVL -515 86 1 3 1330 759 224 67 33 chr5 97733803 97733983 -54803276 + B3A SINE B2 1 186 -12 3 1330 253 309 115 10 chr5 97733991 97734143 -54803116 - MIR3 SINE MIR -64 198 30 3 1330 416 331 44 50 chr5 97734231 97734335 -54802924 + MER70B LTR ERVL 270 372 -206 3 1330 1962 183 35 23 chr5 97734335 97734732 -54802527 + MTB_Mm LTR MaLR 4 405 -2 3 1330 416 331 44 50 chr5 97734732 97734786 -54802473 + MER70B LTR ERVL 373 427 -151 3 1330 543 284 105 17 chr5 97736566 97736738 -54800521 + B3A SINE B2 1 187 -11 3 1330 392 195 16 25 chr5 97737108 97737229 -54800030 + GA-rich Low_complexity Low_complexity 2 121 0 3 1330 305 268 98 49 chr5 97738849 97739073 -54798186 - L1MC4 LINE L1 -29 8013 7779 3 1330 26 30 0 0 chr5 97739250 97739283 -54797976 + AT_rich Low_complexity Low_complexity 1 33 0 3 1330 231 204 0 0 chr5 97739546 97739600 -54797659 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 3 1330 252 0 0 0 chr5 97739653 97739681 -54797578 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1330 604 76 0 0 chr5 97739805 97739897 -54797362 - L1_Mm LINE L1 -4156 1727 1636 3 1330 3617 52 11 0 chr5 97739897 97740342 -54796917 + L1_Mus1 LINE L1 6118 6567 0 3 1330 210 456 0 0 chr5 97740493 97740585 -54796674 - B1F SINE Alu -53 96 5 3 1330 332 22 22 0 chr5 97741297 97741342 -54795917 + (TTG)n Simple_repeat Simple_repeat 3 48 0 3 1330 264 234 35 47 chr5 97741739 97741824 -54795435 + MTEa LTR MaLR 278 361 -18 3 1330 325 292 66 0 chr5 97741992 97742098 -54795161 + RMER15 LTR ERVL 258 370 -205 3 1330 530 270 83 35 chr5 97742100 97742269 -54794990 + ORR1C2 LTR MaLR 3 179 -205 3 1330 3890 268 54 22 chr5 97742296 97743545 -54793714 + Lx8 LINE L1 6173 7462 -11 3 1330 356 276 75 23 chr5 97743575 97743749 -54793510 + L1MC3 LINE L1 7577 7759 -26 3 1330 510 298 59 64 chr5 97744102 97744306 -54792953 - MLT1J-int LTR MaLR -845 542 340 3 1330 3084 80 2 0 chr5 97744496 97744895 -54792364 + MTB LTR MaLR 1 400 0 3 1330 1271 177 98 20 chr5 97745043 97745318 -54791941 - ORR1A4 LTR MaLR -36 342 1 3 1330 1555 231 48 66 chr5 97745319 97745558 -54791701 + RCHARR1 DNA MER1_type 280 532 -442 3 1330 688 299 43 29 chr5 97745558 97745765 -54791494 + B3 SINE B2 1 210 -6 3 1330 1555 231 48 66 chr5 97745765 97745946 -54791313 + RCHARR1 DNA MER1_type 533 690 -284 3 1330 233 29 29 0 chr5 97745946 97745980 -54791279 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 1330 1555 231 48 66 chr5 97745980 97746059 -54791200 + RCHARR1 DNA MER1_type 691 771 -203 3 1330 1201 217 131 45 chr5 97746056 97746369 -54790890 - ORR1C1 LTR MaLR -8 370 31 3 1330 773 259 15 5 chr5 97746438 97746644 -54790615 + RCHARR1 DNA MER1_type 752 959 -15 3 1330 255 254 114 80 chr5 97746874 97747075 -54790184 - L2 LINE L2 -1215 2204 1997 3 1330 1780 191 50 14 chr5 97747110 97747471 -54789788 - ORR1D1 LTR MaLR 0 374 1 3 1330 313 299 71 34 chr5 97748090 97748415 -54788844 - L1M4 LINE L1 -781 5365 5029 3 1330 261 57 0 0 chr5 97748903 97748938 -54788321 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1330 518 329 48 42 chr5 97749168 97749479 -54787780 + Lx8 LINE L1 6923 7235 -238 3 1330 327 293 57 0 chr5 97750891 97751014 -54786245 + L1MC5 LINE L1 7285 7414 -547 3 1330 243 325 0 65 chr5 97751026 97751118 -54786141 + PB1D7 SINE Alu 1 86 -34 3 1330 274 270 0 0 chr5 97751172 97751246 -54786013 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 1330 321 47 0 0 chr5 97751833 97751876 -54785383 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1330 21 0 0 0 chr5 97752073 97752094 -54785165 + AT_rich Low_complexity Low_complexity 1 21 0 3 1330 1008 183 32 5 chr5 97753963 97754182 -54783077 - URR1A DNA MER1_type -1 225 1 3 1330 242 0 0 57 chr5 97754255 97754290 -54782969 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1330 459 269 52 9 chr5 97754311 97754427 -54782832 + ID_B1 SINE B4 93 213 -11 3 1330 230 278 107 38 chr5 97754322 97754453 -54782806 - YREP_Mm Unknown Unknown -1518 294 155 3 1330 27 29 0 0 chr5 97754624 97754658 -54782601 + AT_rich Low_complexity Low_complexity 1 34 0 3 1330 556 240 87 32 chr5 97755628 97755813 -54781446 + B3A SINE B2 4 198 0 3 1330 232 356 0 0 chr5 97756245 97756318 -54780941 - LTR16D LTR ERVL -4 647 575 3 1330 2289 88 28 16 chr5 97756742 97757065 -54780194 + ORR1A2 LTR MaLR 1 327 0 3 1330 557 294 74 10 chr5 97757444 97757647 -54779612 + B3 SINE B2 1 216 0 3 1330 606 28 0 0 chr5 97757722 97757794 -54779465 + (TG)n Simple_repeat Simple_repeat 2 73 0 3 1330 351 326 87 15 chr5 97757842 97758038 -54779221 + ERVL-B4-int LTR ERVL 4198 4407 -1307 3 1330 275 279 29 0 chr5 97758621 97758689 -54778570 + ERVL-B4-int LTR ERVL 5174 5243 -471 3 1330 499 376 39 9 chr5 97759122 97759353 -54777906 + LTR41B LTR ERVL 22 259 -499 3 1330 560 213 277 0 chr5 97759573 97759687 -54777572 - Lx9 LINE L1 -8 7636 7476 3 1330 738 0 0 0 chr5 97759687 97759769 -54777490 + (TC)n Simple_repeat Simple_repeat 1 82 0 3 1330 560 213 277 0 chr5 97759769 97759903 -54777356 - Lx9 LINE L1 -169 7475 7320 3 1330 468 414 40 36 chr5 97760001 97760279 -54776980 + LTR41B LTR ERVL 345 623 -135 3 1330 883 195 35 31 chr5 97761055 97761283 -54775976 - Lx7 LINE L1 0 7696 7468 3 1330 637 262 16 22 chr5 97762688 97762871 -54774388 + B3A SINE B2 1 182 -16 3 1330 287 283 90 85 chr5 97762930 97763131 -54774128 - L2 LINE L2 -639 2780 2579 3 1330 340 276 112 0 chr5 97763140 97763238 -54774021 - B1F1 SINE Alu -36 113 5 3 1330 359 303 64 35 chr5 97763244 97763446 -54773813 - L2 LINE L2 -931 2488 2281 3 1330 279 71 0 0 chr5 97764271 97764313 -54772946 + (T)n Simple_repeat Simple_repeat 1 42 0 3 1330 210 300 0 0 chr5 97765195 97765245 -54772014 - MIRb SINE MIR -37 231 182 3 1330 1574 193 122 15 chr5 97765694 97766088 -54771171 - Lx4B LINE L1 0 7058 6623 3 1330 384 204 27 18 chr5 97766119 97766229 -54771030 - L1MA9 LINE L1 -28 6284 6174 3 1330 307 309 85 42 chr5 97766231 97766420 -54770839 + ORR1E LTR MaLR 1 197 -162 3 1330 300 287 126 42 chr5 97766671 97766900 -54770359 - L1MA9 LINE L1 -246 6054 5801 3 1330 497 249 4 0 chr5 97766900 97767133 -54770126 + (TG)n Simple_repeat Simple_repeat 1 234 0 3 1330 575 92 0 11 chr5 97767164 97767252 -54770007 + (TA)n Simple_repeat Simple_repeat 2 88 0 3 1330 336 237 22 34 chr5 97767271 97767450 -54769809 + (TATG)n Simple_repeat Simple_repeat 4 180 0 3 1330 515 241 0 6 chr5 97767477 97767493 -54769766 + (TG)n Simple_repeat Simple_repeat 1 16 0 3 1330 792 83 0 0 chr5 97767493 97767602 -54769657 + (TA)n Simple_repeat Simple_repeat 2 110 0 3 1330 515 241 0 6 chr5 97767602 97767756 -54769503 + (TG)n Simple_repeat Simple_repeat 2 154 0 3 1330 549 252 13 120 chr5 97767790 97768024 -54769235 - L1MA9 LINE L1 -585 5727 5519 3 1330 2108 189 118 21 chr5 97768073 97768555 -54768704 + MT2A LTR ERVL 5 533 0 4 1330 270 56 0 0 chr5 97768752 97768788 -54768471 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1330 257 257 75 9 chr5 97768928 97769034 -54768225 + L1M5 LINE L1 5752 5864 -309 4 1330 2132 142 87 3 chr5 97769184 97769564 -54767695 + RMER4B LTR ERVK 1 412 -173 4 1330 490 202 12 18 chr5 97769868 97770034 -54767225 + (CA)n Simple_repeat Simple_repeat 2 166 0 4 1330 580 181 24 6 chr5 97770071 97770238 -54767021 + (CA)n Simple_repeat Simple_repeat 1 170 0 4 1330 721 216 14 0 chr5 97770695 97770834 -54766425 + B1_Mur2 SINE Alu 1 141 -8 4 1330 223 255 18 18 chr5 97771049 97771105 -54766154 - ID4 SINE ID -23 60 5 4 1330 23 33 0 0 chr5 97771110 97771140 -54766119 + AT_rich Low_complexity Low_complexity 1 30 0 4 1330 483 146 7 37 chr5 97771157 97771292 -54765967 + (TA)n Simple_repeat Simple_repeat 2 132 0 4 1330 309 51 0 0 chr5 97771368 97771407 -54765852 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 4 1330 22 0 0 0 chr5 97773141 97773163 -54764096 + AT_rich Low_complexity Low_complexity 1 22 0 4 1330 335 78 20 0 chr5 97773192 97773243 -54764016 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 4 1330 286 376 0 19 chr5 97774456 97774559 -54762700 + RMER12 LTR ERVK 750 850 -472 4 1330 201 129 13 67 chr5 97774561 97774636 -54762623 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1330 252 253 116 35 chr5 97774726 97774812 -54762447 + MTEb LTR MaLR 273 365 -14 4 1330 657 0 0 0 chr5 97775579 97775659 -54761600 + L1Md_T LINE L1 6503 6582 0 4 1330 228 86 0 0 chr5 97775662 97775697 -54761562 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1330 797 299 114 9 chr5 97776518 97776940 -54760319 + L1MA6 LINE L1 5448 5913 -387 4 1330 429 269 0 0 chr5 97778796 97778956 -54758303 + (CA)n Simple_repeat Simple_repeat 1 160 0 4 1330 252 0 0 0 chr5 97779206 97779234 -54758025 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 4 166 3060 49 0 0 chr5 97779553 97779899 -54757360 - ORR1A1 LTR MaLR 0 346 1 4 1331 15148 48 7 3 chr5 97779900 97781685 -54755574 - ORR1A1-int LTR MaLR -1 1791 1 4 1331 1938 65 0 12 chr5 97781685 97781936 -54755323 - ORR1A1 LTR MaLR 0 346 99 4 1331 1618 246 11 27 chr5 97782758 97783134 -54754125 + ORR1D2 LTR MaLR 1 370 0 4 1331 282 56 0 0 chr5 97783585 97783621 -54753638 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1331 254 171 31 31 chr5 97783642 97783769 -54753490 + (CAGAGA)n Simple_repeat Simple_repeat 2 128 0 4 1331 228 341 96 62 chr5 97784236 97784414 -54752845 - MIR SINE MIR -81 187 4 4 1331 1613 59 0 0 chr5 97784460 97784663 -54752596 + L1_Mus3 LINE L1 5668 5870 -768 4 1331 898 51 0 8 chr5 97784663 97784782 -54752477 + L1_Mus3 LINE L1 6449 6566 0 4 1331 890 271 208 20 chr5 97784854 97785221 -54752038 + RLTR16 LTR ERVK 1 437 -68 4 1331 464 0 18 0 chr5 97785221 97785277 -54751982 + (GA)n Simple_repeat Simple_repeat 2 58 0 4 1331 232 298 25 50 chr5 97785277 97785301 -54751958 + RLTR16 LTR ERVK 438 460 -45 4 1331 987 111 120 79 chr5 97785482 97785698 -54751561 + Lx LINE L1 6429 6653 -1 4 1331 186 406 30 0 chr5 97785903 97786036 -54751223 - L2a LINE L2 -15 3411 3275 4 1331 486 229 253 14 chr5 97786841 97786987 -54750272 + B3A SINE B2 2 182 -16 4 1331 207 0 0 0 chr5 97787103 97787126 -54750133 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1331 189 0 0 0 chr5 97787126 97787146 -54750113 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1331 331 312 27 27 chr5 97787666 97787778 -54749481 - PB1D10 SINE Alu -5 112 1 4 1331 378 52 0 0 chr5 97788588 97788646 -54748613 - L1Md_F2 LINE L1 0 6582 6525 4 1331 677 269 68 58 chr5 97789432 97789637 -54747622 - B3 SINE B2 0 216 10 4 1331 493 211 138 60 chr5 97790017 97790133 -54747126 + B1_Mur2 SINE Alu 10 134 -15 4 1331 378 0 0 0 chr5 97790136 97790178 -54747081 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1331 234 237 102 0 chr5 97790526 97790585 -54746674 + tRNA-Ala-GCY_ tRNA tRNA 4 68 -7 4 1331 318 26 0 0 chr5 97790589 97790628 -54746631 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1331 232 223 80 9 chr5 97794617 97794730 -54742529 - Lx9 LINE L1 -4 7640 7520 4 1331 405 54 0 0 chr5 97794732 97794788 -54742471 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1331 1119 289 105 31 chr5 97794791 97795269 -54741990 - Lx9 LINE L1 -183 7461 6949 4 1331 1857 306 103 27 chr5 97795569 97796639 -54740620 - Lx9 LINE L1 -707 6937 5662 4 1331 216 231 0 0 chr5 97797992 97798044 -54739215 + CT-rich Low_complexity Low_complexity 4 55 0 4 1331 972 169 0 0 chr5 97798058 97798236 -54739023 + CT-rich Low_complexity Low_complexity 2 179 0 4 1331 755 152 88 0 chr5 97798248 97798373 -54738886 - B1_Mur3 SINE Alu -13 136 1 4 1331 483 18 0 0 chr5 97799918 97799974 -54737285 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1331 404 242 22 92 chr5 97800227 97800416 -54736843 - B4A SINE B4 -115 177 10 4 1331 1296 189 19 14 chr5 97800676 97800891 -54736368 - B3 SINE B2 0 216 1 4 1331 467 294 149 71 chr5 97801000 97801296 -54735963 - MLT1B LTR MaLR -71 319 1 4 1331 26 64 0 0 chr5 97802510 97802557 -54734702 + AT_rich Low_complexity Low_complexity 1 47 0 4 1331 390 271 27 36 chr5 97805520 97805631 -54731628 + PB1D10 SINE Alu 1 110 -7 4 1331 416 279 107 9 chr5 97805737 97805849 -54731410 - RSINE1 SINE B4 -41 124 2 4 1331 428 314 64 21 chr5 97805894 97806034 -54731225 - RSINE1 SINE B4 -4 161 16 4 1331 349 285 113 8 chr5 97806541 97806665 -54730594 - ID_B1 SINE B4 0 224 88 4 1331 237 65 0 0 chr5 97806733 97806764 -54730495 + (CCA)n Simple_repeat Simple_repeat 1 31 0 4 1331 1211 244 158 36 chr5 97806764 97807041 -54730218 - RMER5 LTR ERV1 -10 524 181 4 1331 3271 118 33 8 chr5 97807041 97807521 -54729738 - Lx4A LINE L1 0 7058 6567 4 1331 1211 244 158 36 chr5 97807521 97807710 -54729549 - RMER5 LTR ERV1 -354 180 1 4 1331 1302 81 6 6 chr5 97808382 97808557 -54728702 - B2_Mm2 SINE B2 -20 175 1 4 1331 255 61 0 0 chr5 97809282 97809315 -54727944 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 4 1331 1024 151 49 20 chr5 97809630 97809833 -54727426 - Lx2 LINE L1 -1 6996 6788 4 1331 1352 100 6 11 chr5 97809910 97810092 -54727167 - B2_Mm2 SINE B2 -14 181 1 4 1331 403 261 181 23 chr5 97810457 97810590 -54726669 + RSINE1 SINE B4 4 157 -8 4 1331 203 61 30 0 chr5 97810602 97810635 -54726624 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1331 255 296 48 75 chr5 97813065 97813211 -54724048 + MIRb SINE MIR 91 232 -36 4 1331 342 284 228 24 chr5 97813960 97814166 -54723093 + Lx8 LINE L1 7226 7473 0 4 1331 329 230 180 0 chr5 97814481 97814581 -54722678 + PB1D9 SINE Alu 2 119 -1 4 1331 703 210 112 11 chr5 97815149 97815327 -54721932 + B3A SINE B2 1 196 -2 4 1331 448 287 194 23 chr5 97815681 97815856 -54721403 - B3 SINE B2 -7 209 5 4 1331 277 306 53 18 chr5 97817752 97817865 -54719394 + MLT1J1 LTR MaLR 1 117 -327 4 1331 615 264 98 57 chr5 97817967 97818333 -54718926 + Charlie4a DNA MER1_type 95 475 -33 4 1331 237 176 50 50 chr5 97818578 97818638 -54718621 + B1_Mm SINE Alu 37 96 -51 4 1331 369 0 0 0 chr5 97819039 97819080 -54718179 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1331 598 254 48 21 chr5 97819401 97819546 -54717713 - RSINE1 SINE B4 -6 159 11 4 1331 298 322 115 0 chr5 97819587 97819674 -54717585 - PB1D10 SINE Alu -13 104 8 4 1331 231 296 0 0 chr5 97819848 97819902 -54717357 - ID4 SINE ID -1 82 29 4 1331 230 261 130 0 chr5 97820243 97820312 -54716947 - ID2 SINE ID -2 81 4 4 1331 358 239 174 0 chr5 97821547 97821639 -54715620 - RSINE1 SINE B4 -6 159 52 4 1331 3073 65 121 21 chr5 97821673 97822121 -54715138 - L1_Mus3 LINE L1 0 6638 6176 4 1331 632 129 11 0 chr5 97822121 97822214 -54715045 - B3 SINE B2 -109 107 14 4 1331 365 37 37 0 chr5 97822904 97822958 -54714301 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 4 1331 351 244 127 75 chr5 97823173 97823387 -54713872 - L1M5 LINE L1 -652 5519 5293 4 1331 297 181 16 49 chr5 97823432 97823554 -54713705 + CT-rich Low_complexity Low_complexity 2 119 0 4 1331 254 180 0 39 chr5 97823562 97823614 -54713645 - B1_Mur2 SINE Alu 0 149 100 4 1331 625 124 0 0 chr5 97823651 97823740 -54713519 - B1_Mur2 SINE Alu -50 99 11 4 1331 4324 40 0 0 chr5 97823771 97824250 -54713009 - L1Md_T LINE L1 0 6582 6104 4 1331 299 356 47 20 chr5 97824514 97824769 -54712490 - L1M5 LINE L1 -1029 5117 4856 4 1331 625 139 0 16 chr5 97824904 97825028 -54712231 + (CA)n Simple_repeat Simple_repeat 2 123 0 4 1331 214 186 0 23 chr5 97825345 97825389 -54711870 + CT-rich Low_complexity Low_complexity 3 45 0 4 1331 297 274 34 50 chr5 97825394 97825513 -54711746 - PB1D10 SINE Alu 0 117 1 4 1331 276 188 0 0 chr5 97825526 97825590 -54711669 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 4 1331 278 357 0 35 chr5 97825732 97825848 -54711411 - RMER15 LTR ERVL -105 470 359 4 1331 381 269 20 27 chr5 97826124 97826266 -54710993 - B1_Mus1 SINE Alu -8 142 1 4 1331 393 309 50 14 chr5 97826424 97826565 -54710694 - B1F SINE Alu 0 149 4 4 1331 2284 129 54 3 chr5 97826565 97826938 -54710321 - RLTR19 LTR ERVK -2 497 106 4 1331 22 0 0 0 chr5 97827095 97827117 -54710142 + AT_rich Low_complexity Low_complexity 1 22 0 4 1331 814 224 6 25 chr5 97827135 97827295 -54709964 + RSINE1 SINE B4 6 162 -3 4 1331 430 325 89 59 chr5 97827342 97827545 -54709714 + B4A SINE B4 84 292 0 4 1331 881 265 74 24 chr5 97827620 97827918 -54709341 + L1M2 LINE L1 5473 5785 -506 4 1331 22 35 0 0 chr5 97828005 97828034 -54709225 + AT_rich Low_complexity Low_complexity 1 29 0 4 1331 659 268 39 66 chr5 97828034 97828290 -54708969 - Lx8 LINE L1 -1 7472 7224 4 1331 2522 262 59 10 chr5 97828287 97828977 -54708282 - Lx8 LINE L1 -482 6991 6268 4 1331 5363 146 125 6 chr5 97829355 97830332 -54706927 + RLTR25A LTR ERVK 11 1103 0 4 1331 419 0 20 0 chr5 97831109 97831160 -54706099 + (TTA)n Simple_repeat Simple_repeat 2 53 0 4 1331 1829 219 65 26 chr5 97831160 97831620 -54705639 - Lx2B LINE L1 -29 6971 6494 4 1331 384 222 83 53 chr5 97831620 97831753 -54705506 + LTR33A LTR ERVL 369 505 -15 5 1331 21 0 0 0 chr5 97832300 97832321 -54704938 + AT_rich Low_complexity Low_complexity 1 21 0 5 1331 2879 108 86 0 chr5 97832763 97833172 -54704087 - BGLII_A LTR ERVK -1 444 1 5 1331 224 295 102 28 chr5 97834853 97834961 -54702298 - B1_Mm SINE Alu -17 130 15 5 1331 309 254 187 36 chr5 97834894 97835033 -54702226 - ID_B1 SINE B4 -63 161 2 5 1331 554 226 7 73 chr5 97835058 97835221 -54702038 - B1_Mur4 SINE Alu -1 149 3 5 1331 402 351 90 36 chr5 97835393 97835646 -54701613 - MLT1E1 LTR MaLR 0 654 387 5 1331 1125 260 54 20 chr5 97835646 97836000 -54701259 - MTE2b LTR MaLR 0 379 5 5 1331 1874 185 56 30 chr5 97836110 97836588 -54700671 + RLTR12B LTR ERVK 1 528 0 5 1331 250 307 195 26 chr5 97836606 97836837 -54700422 - MLT1E1 LTR MaLR -378 275 6 5 1331 734 249 55 20 chr5 97836926 97837127 -54700132 + ORR1D2 LTR MaLR 29 236 -134 5 1331 375 310 35 26 chr5 97837122 97837238 -54700021 - PB1D10 SINE Alu 0 117 1 5 1331 395 354 97 7 chr5 97837429 97837719 -54699540 + L1M5 LINE L1 2572 2887 -3259 5 1331 676 233 115 11 chr5 97837969 97838160 -54699099 + B3 SINE B2 1 211 -5 5 1331 23 33 0 0 chr5 97838170 97838200 -54699059 + AT_rich Low_complexity Low_complexity 1 30 0 5 1331 261 0 0 0 chr5 97838397 97838426 -54698833 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1331 364 276 30 30 chr5 97840216 97840347 -54696912 + Charlie10a DNA MER1_type 1 131 -149 5 1331 297 285 69 0 chr5 97841732 97841862 -54695397 - L1MA5 LINE L1 0 6300 6162 5 1331 284 315 44 73 chr5 97843250 97843272 -54693987 - B4A SINE B4 -72 220 88 5 1331 448 224 23 24 chr5 97843272 97843387 -54693872 - B1F SINE Alu -4 123 3 5 1331 255 181 39 65 chr5 97843538 97843615 -54693644 + B1_Mur3 SINE Alu 4 78 -71 5 1331 207 0 0 0 chr5 97844358 97844381 -54692878 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1331 304 218 0 112 chr5 97844386 97844484 -54692775 - B1F2 SINE Alu -12 137 51 5 1331 432 0 0 0 chr5 97844496 97844544 -54692715 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 5 1331 297 220 0 0 chr5 97844547 97844606 -54692653 - B1F2 SINE Alu -40 109 51 5 1331 978 56 0 0 chr5 97844618 97844743 -54692516 + (TAGA)n Simple_repeat Simple_repeat 1 125 0 5 1331 209 313 0 0 chr5 97845776 97845843 -54691416 + MIR SINE MIR 66 132 -130 5 1331 284 234 171 5 chr5 97846379 97846555 -54690704 + LTR40b LTR ERVL 308 519 0 5 1331 300 127 0 0 chr5 97847463 97847518 -54689741 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1331 21 0 0 0 chr5 97848156 97848177 -54689082 + AT_rich Low_complexity Low_complexity 1 21 0 5 1331 300 53 0 0 chr5 97849422 97849460 -54687799 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1331 782 255 57 5 chr5 97849806 97850015 -54687244 - ID_B1 SINE B4 -4 220 1 5 1331 23 33 0 0 chr5 97850154 97850184 -54687075 + AT_rich Low_complexity Low_complexity 1 30 0 5 1331 25 0 0 0 chr5 97850279 97850304 -54686955 + AT_rich Low_complexity Low_complexity 1 25 0 5 1331 468 372 65 32 chr5 97851050 97851419 -54685840 - L2a LINE L2 -23 3403 3023 5 1331 180 0 0 0 chr5 97853317 97853337 -54683922 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5 1331 268 317 81 58 chr5 97853368 97853542 -54683717 - MIR SINE MIR -72 190 13 5 1331 24 0 0 0 chr5 97853605 97853629 -54683630 + AT_rich Low_complexity Low_complexity 1 24 0 5 1331 292 152 38 0 chr5 97854297 97854376 -54682883 + (TATATG)n Simple_repeat Simple_repeat 3 84 0 5 1331 232 319 100 33 chr5 97854449 97854569 -54682690 - B1F SINE Alu -20 129 2 5 1331 358 298 56 40 chr5 97854579 97854705 -54682554 - B1F SINE Alu -12 137 10 5 1331 415 312 8 23 chr5 97854910 97855041 -54682218 - MER45A DNA Tip100 -1 177 49 5 1331 526 266 10 1 chr5 97855046 97855156 -54682103 + B3A SINE B2 53 163 -35 5 1331 270 0 0 0 chr5 97855156 97855186 -54682073 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1331 295 284 55 82 chr5 97855186 97855221 -54682038 + B2_Mm2 SINE B2 156 193 -2 5 1331 417 316 130 56 chr5 97855617 97856131 -54681128 - L1ME3A LINE L1 -235 5938 5387 5 1331 345 352 70 0 chr5 97857106 97857248 -54680011 + ID_B1 SINE B4 57 208 -16 5 1331 192 200 200 0 chr5 97860421 97860481 -54676778 + MIRb SINE MIR 187 258 -10 5 1331 261 363 0 7 chr5 97860873 97861009 -54676250 + L1M7 LINE L1 1236 1370 -4848 5 1331 404 262 19 58 chr5 97861657 97861811 -54675448 - B3A SINE B2 0 198 51 5 1331 463 258 262 18 chr5 97862282 97862503 -54674756 - Lx8 LINE L1 -797 6676 6402 5 1331 323 271 28 0 chr5 97863174 97863281 -54673978 - URR1B DNA MER1_type -6 219 110 5 1331 34783 85 9 7 chr5 97863281 97869414 -54667845 - L1Md_F2 LINE L1 -23 6559 414 5 1331 820 189 13 7 chr5 97869417 97869566 -54667693 - URR1B DNA MER1_type -75 150 1 5 1331 334 318 57 50 chr5 97870020 97870185 -54667074 - MLT1C LTR MaLR -39 428 225 5 1331 564 191 7 20 chr5 97870669 97870819 -54666440 + GA-rich Low_complexity Low_complexity 3 150 0 5 1331 982 175 78 29 chr5 97870901 97871107 -54666152 - B3 SINE B2 0 216 1 5 1331 681 239 251 87 chr5 97872078 97872437 -54664822 - MTD LTR MaLR 0 419 2 5 1331 730 259 6 29 chr5 97872544 97872715 -54664544 + B3A SINE B2 1 167 -31 5 1331 207 0 0 0 chr5 97872716 97872739 -54664520 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1331 1558 262 112 22 chr5 97873935 97874686 -54662573 - L1MB3 LINE L1 -146 6037 5220 5 1331 267 225 11 43 chr5 97875508 97875601 -54661658 - Lx4B LINE L1 -7 7051 6962 5 1331 2443 199 77 74 chr5 97875845 97876533 -54660726 - RMER6C LTR ERVK 0 690 1 5 1331 234 293 107 24 chr5 97876772 97876856 -54660403 - Lx8 LINE L1 -562 6911 6821 5 1331 298 287 121 64 chr5 97876958 97877222 -54660037 + Lx8 LINE L1 7195 7473 0 5 1331 5732 62 3 11 chr5 97878707 97879483 -54657776 + RLTR13C2 LTR ERVK 1 961 -17 5 1331 208 147 0 0 chr5 97880090 97880124 -54657135 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1331 1861 62 7 71 chr5 97880967 97881247 -54656012 + L1_Mus2 LINE L1 6305 6566 0 5 1331 1047 233 88 82 chr5 97881293 97881714 -54655545 + MT2A LTR ERVL 4 559 -42 5 1331 345 47 0 0 chr5 97882111 97882154 -54655105 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1331 866 185 110 0 chr5 97882160 97882333 -54654926 - B3 SINE B2 -24 192 1 5 1331 22 0 0 0 chr5 97882516 97882538 -54654721 + AT_rich Low_complexity Low_complexity 1 22 0 5 1331 304 280 149 68 chr5 97882622 97883236 -54654023 - L1MEc LINE L1 -3418 2901 2237 5 1331 364 192 45 34 chr5 97883499 97883677 -54653582 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1331 29 94 0 0 chr5 97883755 97883840 -54653419 + AT_rich Low_complexity Low_complexity 1 85 0 5 1331 189 107 0 0 chr5 97886399 97886427 -54650832 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1331 314 252 206 17 chr5 97886672 97886959 -54650300 - L1MEc LINE L1 -5037 1363 1023 5 1331 421 293 83 29 chr5 97886994 97887272 -54649987 - L1MEc LINE L1 -5431 969 677 5 1331 971 254 85 20 chr5 97887283 97887576 -54649683 - Lx8 LINE L1 -7 7466 7155 5 1331 1480 281 117 36 chr5 97887579 97888149 -54649110 + Lx8 LINE L1 6411 7018 -455 5 1331 399 41 0 0 chr5 97888149 97888198 -54649061 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1331 1480 281 117 36 chr5 97888198 97888269 -54648990 + Lx8 LINE L1 7019 7104 -369 5 1331 552 300 140 36 chr5 97888299 97888742 -54648517 - L1MEc LINE L1 -5699 701 213 5 1331 2311 54 7 3 chr5 97888767 97889064 -54648195 + L1_Mus3 LINE L1 6341 6638 0 5 1331 51 75 0 0 chr5 97889759 97889866 -54647393 + AT_rich Low_complexity Low_complexity 1 107 0 5 1331 1533 38 0 21 chr5 97889952 97890142 -54647117 + B2_Mm1a SINE B2 2 187 -6 5 1331 1006 51 80 14 chr5 97890212 97890350 -54646909 - B1_Mus1 SINE Alu -1 147 1 5 1331 1730 69 196 4 chr5 97890351 97890554 -54646705 + Lx3_Mus LINE L1 6682 6893 -116 5 1331 483 18 0 0 chr5 97890554 97890610 -54646649 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1331 1730 69 196 4 chr5 97890610 97890681 -54646578 + Lx3_Mus LINE L1 6894 7009 0 5 1331 23 0 0 0 chr5 97890681 97890704 -54646555 + AT_rich Low_complexity Low_complexity 1 23 0 5 1331 1625 152 104 27 chr5 97890945 97891283 -54645976 + ORR1B1 LTR MaLR 2 365 -29 5 1331 194 300 69 10 chr5 97891310 97891411 -54645848 + L2a LINE L2 3260 3366 -60 5 1331 355 293 58 68 chr5 97892266 97892471 -54644788 - RLTR41 LTR ERV1 -45 401 199 5 1331 216 0 0 0 chr5 97893139 97893163 -54644096 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 5 1331 3531 58 2 7 chr5 97893187 97893652 -54643607 - L1Md_F3 LINE L1 0 6584 6122 5 1331 240 149 0 0 chr5 97895716 97895763 -54641496 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 5 1331 207 0 0 0 chr5 97896172 97896195 -54641064 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 5 1331 618 14 0 0 chr5 97896234 97896305 -54640954 + (GA)n Simple_repeat Simple_repeat 1 71 0 5 1331 1296 123 66 5 chr5 97896783 97896996 -54640263 - URR1A DNA MER1_type 0 226 1 5 1331 222 37 0 0 chr5 97898215 97898242 -54639017 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1331 292 29 0 0 chr5 97898273 97898308 -54638951 + U2 snRNA snRNA 1 35 -153 5 1331 997 227 90 18 chr5 97898731 97899063 -54638196 + ORR1E LTR MaLR 4 359 0 5 1331 372 107 0 51 chr5 97899128 97899207 -54638052 + CT-rich Low_complexity Low_complexity 5 79 0 5 1331 1837 221 45 25 chr5 97900285 97900515 -54636744 - MTD LTR MaLR -8 411 168 5 1331 2142 174 32 7 chr5 97900515 97900926 -54636333 + MTC LTR MaLR 1 421 0 5 1331 1837 221 45 25 chr5 97900926 97901098 -54636161 - MTD LTR MaLR -252 167 1 5 1331 806 219 104 30 chr5 97901494 97901696 -54635563 - MTD LTR MaLR -6 413 197 5 1331 1314 250 103 40 chr5 97901718 97902243 -54635016 - RMER1C Other Other -24 1318 761 5 1331 314 192 37 49 chr5 97902243 97902325 -54634934 - MTD LTR MaLR -224 195 115 5 1331 574 256 44 38 chr5 97902367 97902525 -54634734 + MTD LTR MaLR 42 200 -219 5 1331 412 261 99 8 chr5 97902552 97902683 -54634576 + MTD LTR MaLR 277 419 0 5 1331 405 0 0 0 chr5 97902821 97902866 -54634393 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 6 1331 249 33 0 0 chr5 97903324 97903354 -54633905 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1331 2024 277 63 15 chr5 97903426 97904111 -54633148 - Lx8 LINE L1 -177 7296 6579 6 1331 435 92 0 0 chr5 97904219 97904284 -54632975 + (TG)n Simple_repeat Simple_repeat 2 66 0 6 1331 537 279 69 17 chr5 97904315 97904490 -54632769 - MTD LTR MaLR -218 201 18 6 1331 1850 166 88 6 chr5 97904546 97904897 -54632362 - MTC LTR MaLR -24 397 18 6 1331 1659 194 60 6 chr5 97906648 97906980 -54630279 - MTC LTR MaLR -71 350 1 6 1331 368 236 55 39 chr5 97907113 97907241 -54630018 + MER58B DNA MER1_type 95 224 -117 6 1331 226 326 188 33 chr5 97907592 97907868 -54629391 + L2c LINE L2 2285 2603 -816 6 1331 194 338 75 43 chr5 97908238 97908342 -54628917 + L2c LINE L2 3031 3139 -248 6 1331 1480 185 33 130 chr5 97908342 97908765 -54628494 - ORR1C2 LTR MaLR 0 384 3 6 1331 194 338 75 43 chr5 97908765 97908821 -54628438 + L2c LINE L2 3140 3195 -192 6 1331 470 17 17 0 chr5 97908888 97908947 -54628312 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 6 1331 242 86 0 0 chr5 97908995 97909030 -54628229 - U3 snRNA snRNA -182 35 1 6 1331 374 234 106 0 chr5 97910227 97910321 -54626938 - MTE2a LTR MaLR -99 280 177 6 1331 437 309 49 12 chr5 97910479 97910643 -54626616 + MER115 DNA Tip100 462 631 -62 6 1332 2747 82 14 2 chr5 97910952 97911367 -54625892 - L1_Mur1 LINE L1 -1855 4031 3612 6 1332 1102 62 0 40 chr5 97911815 97911965 -54625294 + B1_Mm SINE Alu 4 147 0 6 1332 204 40 0 0 chr5 97911965 97911990 -54625269 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1332 1496 212 81 0 chr5 97912071 97912415 -54624844 - ORR1D1 LTR MaLR -2 372 1 6 1332 1031 274 161 3 chr5 97914242 97914583 -54622676 + MTD LTR MaLR 25 419 0 6 1332 1173 107 0 17 chr5 97914855 97914876 -54622383 - B2_Mm2 SINE B2 -17 178 159 6 1332 180 0 0 0 chr5 97914876 97914896 -54622363 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 6 1332 1181 76 6 0 chr5 97914896 97915054 -54622205 - B2_Mm1t SINE B2 -33 160 2 6 1332 342 0 0 0 chr5 97915700 97915738 -54621521 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1332 227 300 83 0 chr5 97915918 97915978 -54621281 + ID4_ SINE ID 2 66 -17 6 1332 458 33 17 0 chr5 97915988 97916048 -54621211 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1332 1048 241 132 52 chr5 97916126 97916490 -54620769 + MTD LTR MaLR 5 397 -22 6 1332 248 200 82 41 chr5 97916544 97916617 -54620642 + B1F1 SINE Alu 33 108 -41 6 1332 519 328 136 7 chr5 97916688 97917115 -54620144 - L1MA7 LINE L1 -73 6218 5737 6 1332 2858 39 7 132 chr5 97917127 97917573 -54619686 + RLTR10 LTR ERVK 1 390 0 6 1332 7552 47 0 2 chr5 97917583 97918543 -54618716 + RLTR10-int LTR ERVK 41 998 -989 6 1332 318 232 62 39 chr5 97918607 97918737 -54618522 + RLTR10-int LTR ERVK 1462 1594 -5987 6 1332 8388 22 0 0 chr5 97918819 97919814 -54617445 + RLTR10-int LTR ERVK 990 1984 -3 6 1332 2855 39 7 132 chr5 97919816 97920262 -54616997 + RLTR10 LTR ERVK 1 390 0 6 1332 739 270 59 10 chr5 97920346 97920653 -54616606 - L1MA7 LINE L1 -709 5603 5282 6 1332 416 271 119 33 chr5 97920735 97920979 -54616280 - Lx8 LINE L1 -5 7468 7204 6 1332 439 270 88 0 chr5 97921015 97921174 -54616085 - L1MA7 LINE L1 -3516 2627 2455 6 1332 386 303 16 8 chr5 97921193 97921316 -54615943 + MER3 DNA MER1_type 1 124 -85 6 1332 516 323 212 18 chr5 97921352 97921809 -54615450 - BLACKJACK DNA AcHobo -2395 549 4 6 1332 721 291 26 0 chr5 97923104 97923255 -54614004 + B3A SINE B2 2 156 -42 6 1332 414 0 0 0 chr5 97923264 97923310 -54613949 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1332 1612 145 187 25 chr5 97923555 97923908 -54613351 + RMER17C LTR ERVK 1 410 0 6 1332 203 0 0 36 chr5 97924041 97924069 -54613190 + (TTA)n Simple_repeat Simple_repeat 2 28 0 6 1332 1602 77 8 64 chr5 97924138 97924387 -54612872 - L1_Mus1 LINE L1 0 6567 6333 6 1332 324 102 0 0 chr5 97925281 97925330 -54611929 + (TCC)n Simple_repeat Simple_repeat 3 51 0 6 1332 418 289 106 108 chr5 97926251 97926620 -54610639 + MLT2B4 LTR ERVL 1 368 -188 6 1332 552 250 75 28 chr5 97926890 97927304 -54609955 + ORR1D2 LTR MaLR 3 370 -4 6 1332 22 0 0 0 chr5 97927441 97927463 -54609796 + AT_rich Low_complexity Low_complexity 1 22 0 6 1332 291 352 28 40 chr5 97927722 97927928 -54609331 - B4A SINE B4 -19 273 26 6 1332 318 26 0 0 chr5 97928031 97928070 -54609189 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1332 423 0 0 0 chr5 97928753 97928800 -54608459 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 6 1332 543 262 131 0 chr5 97928801 97928923 -54608336 - B1_Mur2 SINE Alu -11 138 1 6 1332 367 319 92 28 chr5 97928923 97928943 -54608316 - B4 SINE B4 -77 215 65 6 1332 248 319 17 26 chr5 97931333 97931449 -54605810 + MER5A1 DNA MER1_type 30 144 -22 6 1332 649 157 24 7 chr5 97933943 97934033 -54603226 + RMER17C LTR ERVK 1 82 -328 6 1332 189 0 0 0 chr5 97934033 97934054 -54603205 + (C)n Simple_repeat Simple_repeat 1 21 0 6 1332 1104 115 19 69 chr5 97934054 97934272 -54602987 + RMER17C LTR ERVK 83 410 0 6 1332 383 177 0 10 chr5 97934759 97934849 -54602410 + CT-rich Low_complexity Low_complexity 8 97 0 6 1332 438 20 0 0 chr5 97934849 97934900 -54602359 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1332 209 200 0 0 chr5 97934995 97935035 -54602224 + CT-rich Low_complexity Low_complexity 1 40 0 6 1332 234 228 9 90 chr5 97936606 97936717 -54600542 + CT-rich Low_complexity Low_complexity 3 104 0 6 1332 1030 199 72 180 chr5 97936801 97937218 -54600041 + ORR1D1 LTR MaLR 1 372 -2 6 1332 191 167 24 0 chr5 97939736 97939778 -54597481 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1332 22 56 0 0 chr5 97939878 97939914 -54597345 + AT_rich Low_complexity Low_complexity 1 36 0 6 1332 2234 160 15 10 chr5 97939996 97940388 -54596871 + ORR1B1 LTR MaLR 1 394 0 6 1332 1434 291 47 62 chr5 97940817 97941505 -54595754 + Lx8 LINE L1 6792 7468 -5 6 1332 594 75 0 0 chr5 97941816 97941896 -54595363 + (GA)n Simple_repeat Simple_repeat 1 80 0 6 1332 244 318 12 0 chr5 97943614 97943699 -54593560 + GA-rich Low_complexity Low_complexity 2 87 0 6 1332 322 318 51 62 chr5 97944355 97944603 -54592656 - MLT1E1A LTR MaLR -3 677 387 6 1332 456 284 68 0 chr5 97945460 97945608 -54591651 - RSINE1 SINE B4 -4 161 4 6 1332 224 274 82 0 chr5 97945818 97945891 -54591368 - RSINE1 SINE B4 -13 152 74 6 1332 1547 248 65 52 chr5 97945895 97946363 -54590896 + RLTR20B3 LTR ERVK 31 506 -71 6 1332 222 118 0 0 chr5 97946363 97946397 -54590862 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1332 1547 248 65 52 chr5 97946397 97946447 -54590812 + RLTR20B3 LTR ERVK 507 556 -21 6 1332 256 230 63 63 chr5 97946460 97946539 -54590720 - B4 SINE B4 -212 80 2 6 1332 2225 233 66 7 chr5 97947914 97948475 -54588784 + Lx6 LINE L1 6854 7447 -13 6 1332 36314 29 0 0 chr5 97948748 97955193 -54582066 - L1Md_T LINE L1 0 6585 44 6 1332 1310 182 155 0 chr5 97955835 97956131 -54581128 + Lx5 LINE L1 6709 7050 0 6 1332 234 0 0 0 chr5 97956349 97956375 -54580884 + (TAA)n Simple_repeat Simple_repeat 3 28 0 6 1332 21 0 0 0 chr5 97956895 97956916 -54580343 + AT_rich Low_complexity Low_complexity 1 21 0 6 1332 181 170 0 54 chr5 97957314 97957370 -54579889 + CT-rich Low_complexity Low_complexity 2 54 0 6 1332 435 19 0 0 chr5 97957638 97957690 -54579569 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1332 1084 68 0 0 chr5 97958075 97958207 -54579052 + B1_Mus1 SINE Alu 4 135 -13 6 1332 290 24 48 0 chr5 97958207 97958249 -54579010 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 6 1332 700 332 36 4 chr5 97958852 97959133 -54578126 - B4A SINE B4 0 292 3 6 1332 597 292 113 12 chr5 97960185 97960521 -54576738 - L1MB3 LINE L1 -116 6067 5698 6 1332 188 333 55 45 chr5 97961838 97961948 -54575311 + MIR3 SINE MIR 85 195 -13 6 1332 23 0 0 0 chr5 97962694 97962717 -54574542 + AT_rich Low_complexity Low_complexity 1 23 0 6 1332 241 296 14 14 chr5 97963823 97963895 -54573364 + B3 SINE B2 6 77 -139 6 1332 401 322 116 15 chr5 97964100 97964437 -54572822 - L1M4 LINE L1 -2922 3224 2854 6 1332 272 333 20 0 chr5 97965071 97965170 -54572089 + MER34A1 LTR ERV1 477 577 -10 6 1332 1536 181 43 46 chr5 97965312 97965637 -54571622 + ORR1C1 LTR MaLR 6 329 -49 6 1332 1297 205 148 99 chr5 97965650 97966223 -54571036 + MT2B LTR ERVL 1 601 0 6 1332 414 0 0 0 chr5 97967258 97967304 -54569955 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1332 21 0 0 0 chr5 97967733 97967754 -54569505 + AT_rich Low_complexity Low_complexity 1 21 0 6 1332 535 176 78 10 chr5 97968045 97968148 -54569111 + ORR1D1 LTR MaLR 263 372 -2 6 1332 840 154 305 10 chr5 97968196 97968271 -54568988 - ORR1D1 LTR MaLR -100 274 200 6 1332 530 15 15 0 chr5 97968271 97968338 -54568921 + (GA)n Simple_repeat Simple_repeat 1 68 0 6 1332 840 154 305 10 chr5 97968338 97968465 -54568794 - ORR1D1 LTR MaLR -175 199 12 6 1332 1131 179 74 0 chr5 97968472 97968701 -54568558 - ORR1D1-int LTR MaLR 0 1370 1125 6 1332 1669 207 80 115 chr5 97968719 97968810 -54568449 - RLTR16 LTR ERVK 0 505 425 6 1332 480 18 0 0 chr5 97968810 97968867 -54568392 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1332 1669 207 80 115 chr5 97968867 97969298 -54567961 - RLTR16 LTR ERVK -81 424 1 6 1332 4176 211 116 26 chr5 97969313 97970324 -54566935 - ORR1D1-int LTR MaLR -267 1103 2 6 1332 659 176 0 0 chr5 97970323 97970431 -54566828 - ORR1D1 LTR MaLR 0 374 267 6 1332 663 247 19 25 chr5 97970424 97970582 -54566677 - ORR1D1 LTR MaLR -210 164 8 6 1332 547 273 32 0 chr5 97970815 97971002 -54566257 + L1_Mur3 LINE L1 5289 5481 -399 6 1332 2116 269 23 23 chr5 97971004 97971526 -54565733 + MTE-int LTR MaLR 934 1455 -125 6 1332 1157 139 119 0 chr5 97971772 97971974 -54565285 - URR1A DNA MER1_type 0 226 1 6 1332 244 281 0 15 chr5 97972939 97973004 -54564255 + (TA)n Simple_repeat Simple_repeat 2 65 0 6 1332 372 331 52 23 chr5 97973748 97973860 -54563399 - L1ME2 LINE L1 -218 5946 5824 6 1332 213 39 0 0 chr5 97973860 97973886 -54563373 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1332 372 331 52 23 chr5 97973886 97974116 -54563143 - L1ME2 LINE L1 -341 5823 5595 6 1332 514 339 24 38 chr5 97974116 97974407 -54562852 - B4A SINE B4 -3 289 3 6 1332 189 107 0 0 chr5 97974780 97974808 -54562451 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 6 1332 180 0 0 0 chr5 97974965 97974985 -54562274 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1332 248 262 10 0 chr5 97975094 97975197 -54562062 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 1332 22 0 0 0 chr5 97975346 97975368 -54561891 + AT_rich Low_complexity Low_complexity 1 22 0 7 1332 198 0 0 0 chr5 97975459 97975481 -54561778 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 7 1332 601 240 23 8 chr5 97976554 97976684 -54560575 + RSINE1 SINE B4 3 134 -31 7 1332 552 65 0 0 chr5 97976737 97976814 -54560445 + (TC)n Simple_repeat Simple_repeat 2 78 0 7 1332 243 0 0 0 chr5 97976814 97976840 -54560419 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1332 439 320 62 57 chr5 97977210 97977402 -54559857 + B3A SINE B2 4 196 -2 7 1332 16830 60 2 1 chr5 97977402 97979654 -54557605 + L1Md_F2 LINE L1 3333 5586 -297 7 1332 8288 40 1 1 chr5 97979654 97980650 -54556609 + L1Md_F2 LINE L1 5587 6582 0 7 1332 29 28 0 0 chr5 97980650 97980686 -54556573 + AT_rich Low_complexity Low_complexity 1 36 0 7 1332 487 275 58 95 chr5 97981415 97981804 -54555455 + RLTR11B LTR ERVK 90 474 -53 7 1332 1047 206 91 30 chr5 97981823 97982053 -54555206 + MTD LTR MaLR 161 404 -15 7 1332 772 223 20 30 chr5 97982218 97982421 -54554838 + B3 SINE B2 5 205 -11 7 1332 1244 40 0 0 chr5 97982814 97982962 -54554297 - B1_Mus1 SINE Alu 0 148 1 7 1332 233 75 25 0 chr5 97984355 97984395 -54552864 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 7 1332 1411 74 11 0 chr5 97984405 97984595 -54552664 - B2_Mm1t SINE B2 -1 192 1 7 1332 189 203 0 0 chr5 97985246 97985267 -54551992 + A-rich Low_complexity Low_complexity 1 21 0 7 1332 1189 55 7 0 chr5 97985267 97985413 -54551846 + B1_Mus2 SINE Alu 1 147 0 7 1332 189 203 0 0 chr5 97985413 97985450 -54551809 + A-rich Low_complexity Low_complexity 22 58 0 7 1332 323 138 31 0 chr5 97986309 97986327 -54550932 + polypurine Low_complexity Low_complexity 3 20 0 7 1332 1308 79 0 0 chr5 97986327 97986505 -54550754 + (GGGGA)n Simple_repeat Simple_repeat 3 180 0 7 1332 323 138 31 0 chr5 97986505 97986551 -54550708 + polypurine Low_complexity Low_complexity 21 68 0 7 1332 28 0 0 0 chr5 97986824 97986852 -54550407 + AT_rich Low_complexity Low_complexity 1 28 0 7 1332 774 50 0 0 chr5 97988465 97988564 -54548695 + (TCC)n Simple_repeat Simple_repeat 1 99 0 7 1332 414 0 0 0 chr5 97988641 97988687 -54548572 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1332 3432 57 0 25 chr5 97989594 97990065 -54547194 + L1Md_F2 LINE L1 6101 6559 -23 7 1332 801 0 0 0 chr5 97990065 97990154 -54547105 + (GAA)n Simple_repeat Simple_repeat 1 89 0 7 1332 240 35 0 0 chr5 97990308 97990337 -54546922 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1332 619 306 92 44 chr5 97990874 97991189 -54546070 - MLT1A LTR MaLR 0 374 45 7 1332 610 262 42 26 chr5 97991949 97992141 -54545118 - ID_B1 SINE B4 -28 196 2 7 1332 530 340 35 50 chr5 97993678 97993960 -54543299 + B4 SINE B4 5 282 -10 7 1332 243 0 0 0 chr5 97993969 97993996 -54543263 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1332 372 71 0 0 chr5 97993996 97994052 -54543207 + (GA)n Simple_repeat Simple_repeat 1 56 0 7 1332 495 0 0 0 chr5 97994066 97994121 -54543138 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 7 1332 21 0 0 0 chr5 97995587 97995608 -54541651 + AT_rich Low_complexity Low_complexity 1 21 0 7 1332 292 192 0 0 chr5 97996345 97996397 -54540862 + Lx6 LINE L1 6828 6879 -581 7 1332 341 186 0 14 chr5 97996399 97996470 -54540789 + GA-rich Low_complexity Low_complexity 5 74 0 7 1332 2007 215 57 91 chr5 97996470 97997084 -54540175 + Lx6 LINE L1 6851 7443 -17 7 1332 214 333 46 72 chr5 97997724 97997876 -54539383 + L2b LINE L2 3228 3375 0 7 1332 468 0 0 0 chr5 97999021 97999073 -54538186 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1332 184 122 0 47 chr5 97999088 97999131 -54538128 + GA-rich Low_complexity Low_complexity 2 42 0 7 1332 1360 136 4 43 chr5 97999467 97999698 -54537561 + URR1A DNA MER1_type 5 226 0 7 1332 191 196 59 0 chr5 97999946 97999997 -54537262 + L2a LINE L2 3307 3360 -66 7 1332 343 286 11 96 chr5 98001171 98001349 -54535910 - RSINE1 SINE B4 0 165 3 1 1332 186 43 0 0 chr5 98001652 98001675 -54535584 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 2 1332 399 86 0 0 chr5 98002013 98002058 -54535201 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 1332 267 103 0 0 chr5 98002058 98002097 -54535162 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1332 399 86 0 0 chr5 98002097 98002109 -54535150 + (TA)n Simple_repeat Simple_repeat 2 13 0 5 1332 1113 128 0 0 chr5 98002109 98002289 -54534970 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1332 319 304 103 7 chr5 98002387 98002533 -54534726 + MLT1J1 LTR MaLR 283 442 -2 7 1332 6910 95 9 50 chr5 98002829 98004101 -54533158 - Lx LINE L1 -6 6648 5422 8 1332 307 238 69 10 chr5 98004982 98005084 -54532175 - L1MD2 LINE L1 -738 5824 5717 9 1332 826 337 60 22 chr5 98005342 98006121 -54531138 - L1MC1 LINE L1 -260 6073 5265 1 1332 454 347 73 26 chr5 98006187 98007087 -54530172 - L1MD2 LINE L1 -1954 4590 3648 9 1332 6791 69 13 1 chr5 98007139 98008066 -54529193 - L1Md_F2 LINE L1 -3 6579 5642 1 1332 427 290 128 8 chr5 98008125 98008250 -54529009 - ID_B1 SINE B4 0 224 85 1 1332 307 294 106 26 chr5 98008283 98008472 -54528787 - L1MD2 LINE L1 -4555 2085 1882 9 1332 3066 50 16 0 chr5 98008597 98008979 -54528280 + RLTR10 LTR ERVK 1 388 -2 1 1332 339 263 44 44 chr5 98008981 98009140 -54528119 - L1MD2 LINE L1 -5496 1051 893 9 1332 210 37 0 0 chr5 98009214 98009241 -54528018 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 1 1332 1670 239 15 51 chr5 98010017 98010425 -54526834 - MT2A LTR ERVL -81 520 3 1 1332 458 250 60 42 chr5 98010452 98010619 -54526640 + RMER5 LTR ERV1 349 518 -16 1 1332 207 0 0 0 chr5 98011119 98011142 -54526117 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1332 236 287 93 0 chr5 98011217 98011325 -54525934 - PB1D7 SINE Alu -2 118 1 1 1332 416 319 98 27 chr5 98011647 98011831 -54525428 - L2 LINE L2 -2137 1282 1086 1 1332 411 21 0 0 chr5 98011833 98011881 -54525378 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1332 474 18 0 0 chr5 98011881 98011935 -54525324 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1332 204 286 10 71 chr5 98012145 98012243 -54525016 + L2a LINE L2 3111 3202 -224 2 1332 1735 231 183 58 chr5 98012446 98013169 -54524090 + RLTR40 LTR ERVK 1 813 -4 2 1332 271 348 98 38 chr5 98013208 98013444 -54523815 - L2 LINE L2 -2597 822 573 1 1332 583 278 110 13 chr5 98015952 98016189 -54521070 + MER2 DNA MER2_type 86 345 0 2 1332 380 337 67 92 chr5 98017060 98017344 -54519915 + MER102a DNA MER1_type 29 305 -25 2 1332 856 201 158 36 chr5 98017387 98017665 -54519594 + Lx7 LINE L1 7119 7430 -266 2 1332 214 130 18 53 chr5 98018168 98018225 -54519034 + (TTATA)n Simple_repeat Simple_repeat 3 57 0 2 1332 28 29 0 0 chr5 98018510 98018545 -54518714 + AT_rich Low_complexity Low_complexity 1 35 0 2 1332 1566 186 114 3 chr5 98020884 98021261 -54515998 + MTD LTR MaLR 1 419 0 2 1332 218 231 0 15 chr5 98021446 98021512 -54515747 + CT-rich Low_complexity Low_complexity 3 67 0 3 1332 290 270 0 26 chr5 98021705 98021781 -54515478 + CT-rich Low_complexity Low_complexity 2 75 0 3 1332 219 139 0 0 chr5 98022411 98022447 -54514812 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 3 1332 27 29 0 0 chr5 98023806 98023840 -54513419 + AT_rich Low_complexity Low_complexity 1 34 0 3 1332 230 279 129 27 chr5 98024042 98024189 -54513070 - MIR SINE MIR -37 225 72 3 1332 1161 197 9 0 chr5 98024189 98024412 -54512847 - URR1B DNA MER1_type 0 225 1 3 1332 193 267 148 49 chr5 98024412 98024465 -54512794 - MIRb SINE MIR -197 71 9 3 1332 242 354 31 10 chr5 98024743 98024840 -54512419 + MER63D DNA AcHobo 272 370 -691 3 1332 254 338 89 89 chr5 98025058 98025237 -54512022 - MER117 DNA MER1_type -17 180 2 3 1332 213 94 0 0 chr5 98027881 98027913 -54509346 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1332 438 20 0 0 chr5 98028144 98028195 -54509064 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1332 245 291 65 15 chr5 98031301 98031434 -54505825 + MIRb SINE MIR 1 142 -134 4 1332 21 0 0 0 chr5 98031681 98031702 -54505557 + AT_rich Low_complexity Low_complexity 1 21 0 4 1332 2875 41 3 3 chr5 98032514 98032860 -54504399 - ORR1A1 LTR MaLR 0 346 1 4 1332 381 279 71 0 chr5 98032864 98033004 -54504255 - Lx9 LINE L1 -279 7365 7216 4 1332 437 196 0 21 chr5 98033004 98033098 -54504161 + Lx9 LINE L1 7385 7476 -168 4 1332 199 79 53 0 chr5 98033100 98033138 -54504121 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1332 225 0 0 0 chr5 98033179 98033204 -54504055 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1332 198 0 0 0 chr5 98033400 98033422 -54503837 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1332 185 65 32 0 chr5 98033457 98033488 -54503771 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1332 29 28 0 0 chr5 98033566 98033602 -54503657 + AT_rich Low_complexity Low_complexity 1 36 0 4 1332 248 91 0 22 chr5 98033605 98033650 -54503609 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1332 1048 97 0 27 chr5 98033766 98033779 -54503480 - B1_Mus1 SINE Alu 0 148 139 4 1332 208 0 62 0 chr5 98033779 98033811 -54503448 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1332 1048 97 0 27 chr5 98033811 98033945 -54503314 - B1_Mus1 SINE Alu -10 138 5 4 1332 1301 123 32 5 chr5 98034700 98034920 -54502339 - URR1A DNA MER1_type 0 226 1 5 1332 306 0 0 0 chr5 98037162 98037196 -54500063 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1332 297 0 0 0 chr5 98037196 98037228 -54500031 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1332 15587 25 1 0 chr5 98037433 98040022 -54497237 - L1Md_T LINE L1 0 6582 3993 5 1332 1262 254 57 43 chr5 98040076 98040425 -54496834 - MTD LTR MaLR -65 354 1 5 1332 533 226 138 7 chr5 98040748 98040886 -54496373 + B3 SINE B2 1 156 -60 5 1332 1126 75 7 0 chr5 98040999 98041146 -54496113 + B1_Mus1 SINE Alu 1 148 0 5 166 1861 284 75 25 chr5 98041156 98042054 -54495205 + Zaphod DNA Tip100 3054 3996 -35 5 1333 1090 265 113 44 chr5 98042819 98043359 -54493900 + RMER1B Other Other 19 448 -618 5 1333 236 220 0 0 chr5 98043374 98043424 -54493835 + RMER1B Other Other 468 517 -549 5 1333 1830 219 153 69 chr5 98043398 98044151 -54493108 + RMER1A Other Other 81 1051 -15 5 1333 4111 42 0 12 chr5 98044363 98044486 -54492773 + RLTR1C LTR ERV1 1 123 -380 6 1333 4425 16 0 0 chr5 98044486 98044979 -54492280 + MT2_Mm LTR ERVL 1 493 0 6 1333 4111 42 0 12 chr5 98044979 98045364 -54491895 + RLTR1C LTR ERV1 124 503 0 6 1333 220 179 0 0 chr5 98045425 98045464 -54491795 + B2_Mm1t SINE B2 1 39 -154 6 1333 255 357 73 34 chr5 98045454 98045660 -54491599 + B4A SINE B4 71 284 -8 6 1333 438 94 0 0 chr5 98045671 98045735 -54491524 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1333 4048 158 83 81 chr5 98047300 98047892 -54489367 - RMER19B LTR ERVK -12 890 245 6 1333 831 21 0 0 chr5 98047892 98047989 -54489270 + (TTTTG)n Simple_repeat Simple_repeat 5 101 0 6 1333 4048 158 83 81 chr5 98047989 98048283 -54488976 - RMER19B LTR ERVK -658 244 2 6 1333 711 0 0 0 chr5 98048314 98048393 -54488866 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 6 1333 470 282 11 69 chr5 98050785 98050960 -54486299 - MER104 DNA Tc2 -16 165 1 6 1333 1515 170 108 44 chr5 98051220 98051373 -54485886 + ORR1C2 LTR MaLR 19 171 -213 6 1333 575 27 14 0 chr5 98051373 98051446 -54485813 + (TC)n Simple_repeat Simple_repeat 2 75 0 7 1333 1515 170 108 44 chr5 98051446 98051636 -54485623 + ORR1C2 LTR MaLR 172 383 -1 6 1333 477 0 0 0 chr5 98051694 98051747 -54485512 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 7 1333 230 0 0 32 chr5 98051747 98051777 -54485482 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 7 1333 40 0 0 0 chr5 98053959 98053999 -54483260 + AT_rich Low_complexity Low_complexity 1 40 0 7 1333 437 181 11 0 chr5 98055419 98055513 -54481746 + CT-rich Low_complexity Low_complexity 1 95 0 7 1333 314 279 104 38 chr5 98055735 98055918 -54481341 + L2a LINE L2 3232 3426 0 7 1333 237 132 0 0 chr5 98058665 98058703 -54478556 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1333 492 320 5 69 chr5 98058726 98058914 -54478345 + B3A SINE B2 6 181 -17 7 1333 1171 267 34 68 chr5 98059725 98060107 -54477152 - MTE2b LTR MaLR 0 379 11 7 1333 898 80 13 0 chr5 98060253 98060403 -54476856 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 7 1333 23 0 0 0 chr5 98060522 98060545 -54476714 + AT_rich Low_complexity Low_complexity 1 23 0 8 1333 520 312 64 5 chr5 98060641 98060844 -54476415 - B4A SINE B4 -2 290 76 8 1333 180 0 0 0 chr5 98061369 98061389 -54475870 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 8 1333 230 259 0 0 chr5 98062327 98062381 -54474878 + L2a LINE L2 3370 3423 -3 8 1333 210 375 84 50 chr5 98063472 98063770 -54473489 + L2a LINE L2 2485 2792 -627 8 1333 240 354 12 0 chr5 98063843 98063925 -54473334 + L2a LINE L2 3344 3426 0 8 1333 192 179 0 0 chr5 98065167 98065206 -54472053 + CT-rich Low_complexity Low_complexity 2 40 0 8 1333 198 0 0 0 chr5 98065913 98065935 -54471324 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 8 1333 352 353 95 7 chr5 98066199 98066336 -54470923 + B1F SINE Alu 1 149 0 8 1333 3982 111 34 14 chr5 98066382 98066967 -54470292 - MT2B LTR ERVL -4 597 1 8 1333 674 291 16 138 chr5 98067266 98067585 -54469674 - B4A SINE B4 -12 280 1 8 1333 390 316 84 37 chr5 98067683 98067897 -54469362 - L1ME1 LINE L1 -111 6068 5845 9 1333 1370 72 16 0 chr5 98068023 98068217 -54469042 - L1_Mus1 LINE L1 -4 6563 6367 9 1333 198 0 0 0 chr5 98069226 98069248 -54468011 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1333 582 15 0 0 chr5 98069344 98069411 -54467848 + (TC)n Simple_repeat Simple_repeat 2 68 0 9 1333 189 0 0 0 chr5 98069411 98069431 -54467828 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1333 285 303 112 0 chr5 98069434 98069523 -54467736 - RSINE1 SINE B4 -24 141 43 9 1333 295 290 79 92 chr5 98069540 98069768 -54467491 + ORR1E LTR MaLR 135 359 0 9 1333 224 276 123 29 chr5 98070109 98070247 -54467012 - MIRb SINE MIR -100 168 18 9 1333 25 31 0 0 chr5 98071262 98071294 -54465965 + AT_rich Low_complexity Low_complexity 1 32 0 9 1333 180 318 78 16 chr5 98071500 98071564 -54465695 + L3 LINE CR1 3002 3069 -1420 9 1333 620 77 11 0 chr5 98072203 98072294 -54464965 + (TCC)n Simple_repeat Simple_repeat 3 94 0 1 1333 2366 190 15 21 chr5 98072630 98073103 -54464156 + RMER5 LTR ERV1 1 470 -64 1 1333 187 229 0 40 chr5 98073825 98073875 -54463384 - L3 LINE CR1 -3611 878 831 1 1333 5379 108 23 5 chr5 98075326 98076164 -54461095 + L1VL2 LINE L1 171 1023 -5312 1 1333 3623 160 0 53 chr5 98076161 98076932 -54460327 + Lx LINE L1 3081 3810 -2076 1 1333 6226 121 42 19 chr5 98076956 98078045 -54459214 + Lx LINE L1 5542 6654 0 1 1333 724 319 89 7 chr5 98078744 98079161 -54458098 + L1_Mur3 LINE L1 5045 5495 -385 1 1333 265 127 0 60 chr5 98080256 98080279 -54456980 + polypyrimidine Low_complexity Low_complexity 43 65 0 1 1333 1143 71 24 0 chr5 98080279 98080449 -54456810 + (TTCCC)n Simple_repeat Simple_repeat 3 176 0 1 1333 265 127 0 60 chr5 98080449 98080492 -54456767 + polypyrimidine Low_complexity Low_complexity 3 42 0 1 1333 467 271 114 45 chr5 98082172 98082373 -54454886 - B3 SINE B2 -1 215 1 1 1333 189 0 0 0 chr5 98082394 98082415 -54454844 + (TTA)n Simple_repeat Simple_repeat 1 21 0 1 1333 471 296 41 91 chr5 98082416 98082613 -54454646 - B3A SINE B2 -10 188 2 1 1333 25 31 0 0 chr5 98082688 98082720 -54454539 + AT_rich Low_complexity Low_complexity 1 32 0 1 1333 234 0 0 0 chr5 98082739 98082765 -54454494 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1333 225 240 20 0 chr5 98083633 98083683 -54453576 + (CGG)n Simple_repeat Simple_repeat 3 53 0 1 1333 180 0 0 0 chr5 98085465 98085485 -54451774 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1333 181 239 87 0 chr5 98085489 98085535 -54451724 - L2 LINE L2 -2890 529 480 1 1333 2527 169 7 9 chr5 98086473 98086921 -54450338 + Lx2B LINE L1 6554 7000 0 1 1333 21 57 0 0 chr5 98086927 98086962 -54450297 + AT_rich Low_complexity Low_complexity 1 35 0 1 1333 447 19 0 0 chr5 98088005 98088057 -54449202 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1 1333 405 314 99 0 chr5 98088061 98088182 -54449077 - ID_B1 SINE B4 -16 208 76 1 1333 375 287 132 0 chr5 98088218 98088385 -54448874 - L1MEc LINE L1 -5232 1168 980 1 1333 7148 56 7 0 chr5 98088521 98089415 -54447844 + L1Md_F2 LINE L1 5683 6582 0 1 1333 439 187 9 9 chr5 98089476 98089584 -54447675 + GA-rich Low_complexity Low_complexity 1 108 0 1 1333 463 196 55 27 chr5 98089623 98089733 -54447526 - B1_Mus2 SINE Alu -1 146 34 1 1333 555 286 75 96 chr5 98089906 98090219 -54447040 - Lx8 LINE L1 -5 7468 7162 1 1333 2271 112 16 0 chr5 98090219 98090541 -54446718 - ORR1A2 LTR MaLR 0 327 1 1 1333 555 286 75 96 chr5 98090541 98090656 -54446603 - Lx8 LINE L1 -312 7161 7049 1 1333 414 0 0 0 chr5 98090795 98090841 -54446418 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1333 375 23 0 0 chr5 98090844 98090888 -54446371 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1333 241 266 96 0 chr5 98091028 98091122 -54446137 - Lx8 LINE L1 -123 7350 7248 1 1333 1129 83 0 0 chr5 98091191 98091336 -54445923 + B1_Mm SINE Alu 1 145 -2 1 1333 227 375 51 38 chr5 98091509 98091667 -54445592 - MIRb SINE MIR -21 247 88 1 1333 1552 283 130 11 chr5 98092149 98092850 -54444409 - Lx8 LINE L1 -29 7444 6661 1 1333 748 278 68 9 chr5 98092847 98093143 -54444116 + Lx8 LINE L1 5561 5904 -1569 1 1333 333 68 0 0 chr5 98093928 98093972 -54443287 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 1 1333 258 105 0 0 chr5 98094793 98094831 -54442428 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1333 384 211 43 18 chr5 98094832 98094996 -54442263 + (TA)n Simple_repeat Simple_repeat 1 168 0 1 1333 301 250 109 0 chr5 98095317 98095409 -54441850 + MER53 DNA hAT 6 107 -86 1 1333 5465 49 0 10 chr5 98095479 98096195 -54441064 - L1Md_F3 LINE L1 -284 5599 4891 1 1333 8070 37 5 0 chr5 98096195 98097161 -54440098 + L1Md_F3 LINE L1 5600 6570 -14 1 1333 1018 246 65 11 chr5 98097586 98097865 -54439394 - MER63D DNA AcHobo -677 384 91 1 1333 513 141 0 0 chr5 98097984 98098069 -54439190 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 1 1333 180 253 88 159 chr5 98099550 98099663 -54437596 - MIR SINE MIR -133 129 25 1 1333 351 306 164 57 chr5 98100318 98100597 -54436662 - B4 SINE B4 -18 274 2 1 1333 3943 221 109 57 chr5 98101501 98102470 -54434789 + Lx7 LINE L1 6307 7353 -343 1 1333 621 0 0 0 chr5 98102470 98102539 -54434720 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1333 3943 221 109 57 chr5 98102539 98102635 -54434624 + Lx7 LINE L1 7354 7456 -240 1 1333 306 0 0 0 chr5 98102635 98102669 -54434590 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1333 3943 221 109 57 chr5 98102669 98102764 -54434495 + Lx7 LINE L1 7457 7542 -154 1 1333 513 47 0 0 chr5 98102764 98102828 -54434431 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 1 1333 3943 221 109 57 chr5 98102828 98102982 -54434277 + Lx7 LINE L1 7543 7690 -6 1 1333 28 29 0 0 chr5 98103046 98103081 -54434178 + AT_rich Low_complexity Low_complexity 1 35 0 1 1333 1877 284 36 70 chr5 98103188 98103301 -54433958 - Lx9 LINE L1 -176 7468 7344 1 1333 432 0 0 0 chr5 98103301 98103349 -54433910 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1333 1877 284 36 70 chr5 98103349 98103725 -54433534 - Lx9 LINE L1 -301 7343 6976 1 1333 802 126 60 0 chr5 98103725 98103876 -54433383 + Lx LINE L1 6493 6652 -2 1 1333 1877 284 36 70 chr5 98103876 98104293 -54432966 - Lx9 LINE L1 -669 6975 6593 1 1333 542 327 33 9 chr5 98104315 98104526 -54432733 - B3A SINE B2 0 216 2 1 1333 297 0 0 0 chr5 98105379 98105412 -54431847 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1333 22 35 0 0 chr5 98105792 98105821 -54431438 + AT_rich Low_complexity Low_complexity 1 29 0 1 1333 1186 104 0 30 chr5 98105829 98105987 -54431272 + B2_Mm2 SINE B2 1 155 -40 1 1333 573 15 0 0 chr5 98105987 98106053 -54431206 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1333 765 200 21 0 chr5 98108155 98108300 -54428959 - B1_Mus1 SINE Alu 0 148 1 1 1333 4919 277 46 4 chr5 98108310 98109690 -54427569 - Lx6 LINE L1 -4 7456 6020 1 1333 6858 183 208 55 chr5 98109701 98110063 -54427196 + Lx6 LINE L1 3088 3472 -2408 1 1333 218 32 0 31 chr5 98110063 98110095 -54427164 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 1 1333 6858 183 208 55 chr5 98110095 98110236 -54427023 + Lx6 LINE L1 3473 3643 -2237 1 1333 834 11 0 0 chr5 98110236 98110331 -54426928 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 1333 6858 183 208 55 chr5 98110331 98110572 -54426687 + Lx6 LINE L1 3644 3797 -2083 1 1333 3747 77 19 16 chr5 98110572 98111086 -54426173 + L1Md_F2 LINE L1 6066 6581 -1 1 1333 6858 183 207 55 chr5 98111084 98111864 -54425395 + Lx6 LINE L1 3798 4624 -1256 1 1333 207 100 0 0 chr5 98111864 98111894 -54425365 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1 1333 4914 187 65 24 chr5 98111894 98112297 -54424962 + Lx6 LINE L1 4625 5029 -851 1 1333 2630 156 42 8 chr5 98112304 98112934 -54424325 + Lx6 LINE L1 5372 6017 -1443 1 1333 410 192 64 0 chr5 98112963 98113041 -54424218 - 5S rRNA rRNA -38 83 1 1 1333 743 305 98 47 chr5 98113471 98113746 -54423513 + ORR1D2 LTR MaLR 80 368 -2 1 1333 358 281 16 88 chr5 98114959 98115084 -54422175 - MLT1H2 LTR MaLR -26 463 348 1 1333 1791 206 16 3 chr5 98115605 98115971 -54421288 - Lx5 LINE L1 -428 6622 6252 1 1333 4468 189 45 2 chr5 98115976 98117240 -54420019 + Lx5 LINE L1 4913 6253 -797 1 1333 721 316 32 29 chr5 98118181 98118458 -54418801 + B4A SINE B4 3 280 -12 1 1333 448 290 109 57 chr5 98119400 98119719 -54417540 - ORR1E LTR MaLR -24 355 1 1 1333 255 79 0 0 chr5 98119760 98119798 -54417461 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1333 553 234 15 66 chr5 98119802 98119939 -54417320 - RSINE1 SINE B4 -34 131 2 1 1333 327 314 79 75 chr5 98120197 98120462 -54416797 + MTEa LTR MaLR 1 266 -113 1 1333 379 364 32 19 chr5 98120478 98120635 -54416624 + MT2A LTR ERVL 270 428 -105 1 1333 225 0 0 0 chr5 98120747 98120772 -54416487 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1333 799 100 18 0 chr5 98120772 98120882 -54416377 - B1_Mus2 SINE Alu -9 138 27 1 1333 962 31 7 52 chr5 98121869 98122004 -54415255 + B1_Mus1 SINE Alu 20 148 0 1 1333 210 212 119 15 chr5 98124251 98124318 -54412941 + B4 SINE B4 4 77 -215 1 1333 723 104 0 0 chr5 98125054 98125160 -54412099 + (CA)n Simple_repeat Simple_repeat 2 107 0 1 1333 481 328 62 51 chr5 98125583 98125859 -54411400 + MER74A LTR ERVL 127 405 -153 1 1333 487 29 29 0 chr5 98127753 98127822 -54409437 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 1 1333 1263 229 66 73 chr5 98128062 98128486 -54408773 - MTC LTR MaLR 0 421 1 1 1333 387 262 0 35 chr5 98129230 98129404 -54407855 + (CATA)n Simple_repeat Simple_repeat 4 171 0 1 1333 21 0 0 0 chr5 98130764 98130785 -54406474 + AT_rich Low_complexity Low_complexity 1 21 0 1 1333 1338 137 259 3 chr5 98130974 98131260 -54405999 + RLTR15 LTR ERVK 1 359 0 1 1333 3650 201 87 25 chr5 98133097 98133998 -54403261 - Lx7 LINE L1 0 7696 6741 1 1333 486 0 0 0 chr5 98134752 98134806 -54402453 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1333 1099 245 15 0 chr5 98135129 98135394 -54401865 - Lx9 LINE L1 -636 7008 6740 1 1333 1225 38 13 6 chr5 98135394 98135552 -54401707 - MTB LTR MaLR 0 400 242 1 1333 1030 54 20 0 chr5 98135552 98135701 -54401558 - MT-int LTR MaLR -946 152 1 1 1333 3398 46 94 0 chr5 98135703 98136137 -54401122 - MT2C_Mm LTR ERVL 0 475 1 1 1333 399 255 183 26 chr5 98136138 98136291 -54400968 - Lx9 LINE L1 -901 6743 6567 1 1333 718 260 146 13 chr5 98136304 98136620 -54400639 - Lx9 LINE L1 -1148 6496 6139 1 1333 603 275 71 18 chr5 98136635 98136861 -54400398 - Lx9 LINE L1 -1625 6019 5782 1 1333 1810 188 30 52 chr5 98136960 98137420 -54399839 + Lx9 LINE L1 7011 7460 -184 1 1333 501 17 0 0 chr5 98137434 98137492 -54399767 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1333 480 319 96 4 chr5 98138519 98138758 -54398501 + Lx8 LINE L1 6776 7036 -660 1 1333 2551 105 42 0 chr5 98138762 98139142 -54398117 - MTB LTR MaLR -4 396 1 1 1333 558 280 33 28 chr5 98139143 98139357 -54397902 + Lx8 LINE L1 7033 7259 -214 1 1333 316 272 206 60 chr5 98139520 98139709 -54397550 - L1MDa LINE L1 -5224 1409 1196 1 1333 1616 199 65 8 chr5 98139709 98140063 -54397196 + ORR1D1 LTR MaLR 1 374 0 1 1333 316 272 206 60 chr5 98140063 98140155 -54397104 - L1MDa LINE L1 -5438 1195 1087 1 1333 786 151 16 0 chr5 98140211 98140337 -54396922 - B1_Mus2 SINE Alu -11 136 9 1 1333 383 281 14 56 chr5 98140212 98140355 -54396904 - ID_B1 SINE B4 -12 212 76 1 1333 2342 254 97 102 chr5 98140440 98141304 -54395955 - RMER13A LTR ERVK 0 860 1 1 1333 325 279 27 9 chr5 98141306 98141418 -54395841 - Lx7 LINE L1 -619 7077 6964 1 1333 4114 138 57 10 chr5 98141577 98142299 -54394960 - RMER6A LTR ERVK 0 756 1 2 1333 323 367 96 44 chr5 98142593 98142844 -54394415 - L1MDa LINE L1 -6356 277 14 1 1333 26 0 0 0 chr5 98142995 98143021 -54394238 + AT_rich Low_complexity Low_complexity 1 26 0 2 1333 417 321 66 15 chr5 98143043 98143255 -54394004 + MIRb SINE MIR 20 246 -16 2 1333 180 262 29 71 chr5 98143226 98143296 -54393963 - MIRb SINE MIR -3 265 199 2 1333 275 115 0 37 chr5 98143478 98143532 -54393727 + GA-rich Low_complexity Low_complexity 4 55 0 2 1333 210 356 149 34 chr5 98144012 98144274 -54392985 - L2 LINE L2 -561 2858 2567 2 1333 438 53 0 0 chr5 98144329 98144386 -54392873 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1333 693 244 15 0 chr5 98144832 98144967 -54392292 + B1_Mur2 SINE Alu 13 149 0 2 1333 335 77 0 110 chr5 98145074 98145147 -54392112 - L1Md_T LINE L1 0 6582 6518 2 1333 5852 27 0 0 chr5 98145147 98145861 -54391398 - L1Md_T LINE L1 -198 6384 5671 2 1333 25 75 0 0 chr5 98146016 98146069 -54391190 + AT_rich Low_complexity Low_complexity 1 53 0 2 1333 1340 12 31 0 chr5 98146368 98146876 -54390383 + (CACAG)n Simple_repeat Simple_repeat 1 524 0 2 1333 285 221 58 32 chr5 98147556 98147710 -54389549 + (TGAG)n Simple_repeat Simple_repeat 3 160 0 2 1333 205 83 71 71 chr5 98147723 98147878 -54389381 + (TGAG)n Simple_repeat Simple_repeat 2 156 0 2 1333 235 113 19 19 chr5 98148165 98148219 -54389040 + GA-rich Low_complexity Low_complexity 1 54 0 2 1333 22 0 0 0 chr5 98148360 98148382 -54388877 + AT_rich Low_complexity Low_complexity 1 22 0 2 1333 3664 117 87 23 chr5 98148382 98149073 -54388186 + RMER17A LTR ERVK 1 735 -16 2 1333 12112 180 150 42 chr5 98149116 98152051 -54385208 - Lx3C LINE L1 -2 6977 3473 2 1333 198 0 0 0 chr5 98152051 98152073 -54385186 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1333 3995 62 2 2 chr5 98152075 98152576 -54384683 - L1_Mus2 LINE L1 -9 6557 6057 2 1333 12112 176 221 66 chr5 98152576 98153174 -54384085 - Lx3C LINE L1 -2408 3472 2690 2 1333 558 0 0 0 chr5 98153174 98153236 -54384023 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1333 12112 176 221 66 chr5 98153236 98153828 -54383431 - Lx3C LINE L1 -3191 2689 2098 2 1333 330 67 0 0 chr5 98153828 98153873 -54383386 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2 1333 12112 176 221 66 chr5 98153873 98154361 -54382898 - Lx3C LINE L1 -3783 2097 1695 2 1333 1258 84 114 33 chr5 98154361 98154571 -54382688 - L1_Mus3 LINE L1 -5 6633 6407 2 1333 12112 192 134 39 chr5 98154571 98155441 -54381818 - Lx3C LINE L1 -4186 1694 699 2 1333 21 36 0 0 chr5 98155883 98155911 -54381348 + AT_rich Low_complexity Low_complexity 1 28 0 2 1333 2940 69 51 0 chr5 98155911 98156302 -54380957 - RLTR10A LTR ERVK 0 411 1 2 1333 233 333 78 107 chr5 98157055 98157297 -54379962 + ORR1D2 LTR MaLR 87 321 -49 2 1333 302 333 78 41 chr5 98157495 98157839 -54379420 + Charlie7 DNA MER1_type 1486 1842 -770 2 1333 283 303 11 0 chr5 98157897 98157986 -54379273 - MER2 DNA MER2_type -104 241 152 2 1333 28 0 0 0 chr5 98157988 98158016 -54379243 + AT_rich Low_complexity Low_complexity 1 28 0 2 1333 543 313 87 28 chr5 98158136 98158458 -54378801 + Charlie7 DNA MER1_type 1974 2314 -298 2 1333 530 319 76 16 chr5 98158566 98158751 -54378508 + B3A SINE B2 1 196 -2 2 1333 369 93 0 0 chr5 98158855 98158909 -54378350 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1333 318 295 128 0 chr5 98159919 98159997 -54377262 - RSINE1 SINE B4 -1 164 77 2 1333 263 352 45 36 chr5 98161053 98161165 -54376094 + PB1D10 SINE Alu 2 114 -3 2 1333 428 255 42 36 chr5 98161304 98161471 -54375788 - RMER15 LTR ERVL -77 498 331 2 1333 282 269 43 0 chr5 98161764 98161857 -54375402 + (CA)n Simple_repeat Simple_repeat 1 97 0 2 1333 315 237 19 19 chr5 98161858 98162017 -54375242 + (CATATA)n Simple_repeat Simple_repeat 6 164 0 2 1333 187 194 43 11 chr5 98162049 98162143 -54375116 + (CA)n Simple_repeat Simple_repeat 2 98 0 2 1333 2220 171 102 73 chr5 98162838 98163387 -54373872 - RMER2 LTR ERV1 -2 565 1 2 1333 231 197 33 0 chr5 98164559 98164620 -54372639 + (TTAAA)n Simple_repeat Simple_repeat 4 66 0 2 1333 2229 69 80 9 chr5 98164915 98165251 -54372008 - Lx2A LINE L1 -555 6453 6094 2 1333 3216 118 106 6 chr5 98165252 98165764 -54371495 + Lx2A LINE L1 6441 7003 -5 2 1333 1985 188 8 10 chr5 98165897 98166284 -54370975 + Lx5 LINE L1 6625 7010 -40 2 1333 492 266 25 0 chr5 98166385 98166543 -54370716 - L1M2a LINE L1 -4962 2206 2045 2 1333 26899 98 23 5 chr5 98167096 98172020 -54365239 + L1Md_F2 LINE L1 423 5589 -297 2 166 6684 103 23 1 chr5 98172021 98172995 -54364264 + L1Md_F2 LINE L1 5588 6582 0 2 1334 311 356 27 31 chr5 98173297 98173403 -54363856 + ID_B1 SINE B4 1 106 -118 2 1334 223 93 0 44 chr5 98173403 98173448 -54363811 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 1334 311 356 27 31 chr5 98173448 98173564 -54363695 + ID_B1 SINE B4 107 222 -2 2 1334 646 282 142 39 chr5 98173585 98174156 -54363103 + L1MA5 LINE L1 3217 3846 -2297 2 1334 246 247 111 0 chr5 98174161 98174242 -54363017 + L1MA5 LINE L1 4867 4956 -1187 2 1334 1022 301 132 42 chr5 98174322 98175380 -54361879 + L1MA5 LINE L1 5116 6269 -31 2 1334 22 56 0 0 chr5 98175919 98175955 -54361304 + AT_rich Low_complexity Low_complexity 1 36 0 2 1334 21 89 0 0 chr5 98176257 98176313 -54360946 + AT_rich Low_complexity Low_complexity 1 56 0 2 1334 303 252 133 44 chr5 98176823 98176981 -54360278 + L1M5 LINE L1 4539 4710 -1436 2 1334 537 264 14 7 chr5 98177032 98177177 -54360082 + B1F SINE Alu 4 149 0 2 1334 514 323 74 63 chr5 98177229 98177702 -54359557 + L1MD LINE L1 4797 5274 -872 2 1334 476 287 70 17 chr5 98177711 98177998 -54359261 + L1M5 LINE L1 5290 5591 -573 2 1334 35609 60 6 5 chr5 98178041 98183899 -54353360 - L1Md_F3 LINE L1 -1 6583 723 2 1334 1033 219 10 19 chr5 98184034 98184243 -54353016 + ORR1B2 LTR MaLR 70 276 -91 2 1334 948 112 0 15 chr5 98184224 98184360 -54352899 - ORR1A1 LTR MaLR -72 274 141 2 1334 276 336 71 32 chr5 98184422 98184705 -54352554 - L1M3 LINE L1 -414 5775 5482 2 1334 297 0 0 0 chr5 98184719 98184752 -54352507 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1334 575 120 8 0 chr5 98184752 98184869 -54352390 + (GA)n Simple_repeat Simple_repeat 2 119 0 2 1334 400 271 206 36 chr5 98184988 98185352 -54351907 - L1M3 LINE L1 -799 5341 4916 2 1334 1262 311 22 34 chr5 98185532 98185942 -54351317 + MTD LTR MaLR 1 405 -14 2 1334 419 344 99 57 chr5 98186032 98186454 -54350805 + L2a LINE L2 2986 3425 -1 2 1334 186 352 39 39 chr5 98186972 98187102 -54350157 + MIRc SINE MIR 9 138 -130 2 1334 260 344 89 38 chr5 98187328 98187706 -54349553 - L2a LINE L2 0 3426 2991 2 1334 212 37 0 0 chr5 98188557 98188584 -54348675 - L2c LINE L2 -2 3385 3359 2 1334 375 83 0 0 chr5 98189718 98189778 -54347481 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1334 260 351 48 65 chr5 98189785 98189971 -54347288 - B3A SINE B2 -14 184 2 2 1334 216 0 0 0 chr5 98191348 98191372 -54345887 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1334 26 0 0 0 chr5 98192152 98192178 -54345081 + AT_rich Low_complexity Low_complexity 1 26 0 2 1334 701 110 7 0 chr5 98193168 98193304 -54343955 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 2 1334 400 241 0 12 chr5 98193324 98193408 -54343851 - ORR1D1 LTR MaLR -268 106 24 2 1334 1662 173 24 3 chr5 98193397 98193687 -54343572 - MT2A LTR ERVL -74 459 164 2 1334 1184 275 4 11 chr5 98193681 98193953 -54343306 - ORR1D1 LTR MaLR -101 273 4 2 1334 217 101 27 80 chr5 98194003 98194078 -54343181 + (TATAA)n Simple_repeat Simple_repeat 1 71 0 2 1334 453 333 7 22 chr5 98194160 98194295 -54342964 + RSINE1 SINE B4 8 140 -25 2 1334 408 20 0 0 chr5 98194298 98194347 -54342912 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1334 292 311 152 5 chr5 98194564 98194748 -54342511 + Tigger2b DNA MER2_type 423 633 -93 2 1334 864 73 8 0 chr5 98194781 98194905 -54342354 + L1_Mus1 LINE L1 6442 6566 -1 2 1334 227 338 75 85 chr5 98195116 98195410 -54341849 + B4A SINE B4 1 291 -1 2 1334 254 167 17 0 chr5 98195411 98195471 -54341788 + (CA)n Simple_repeat Simple_repeat 1 61 0 2 1334 394 55 0 18 chr5 98195718 98195774 -54341485 - B1_Mur4 SINE Alu 0 150 96 2 1334 1700 108 275 0 chr5 98195859 98196164 -54341095 + L1_Mus3 LINE L1 6244 6632 -6 2 1334 22 35 0 0 chr5 98196176 98196205 -54341054 + AT_rich Low_complexity Low_complexity 1 29 0 2 1334 939 181 0 0 chr5 98196251 98196548 -54340711 + (TA)n Simple_repeat Simple_repeat 1 297 0 2 1334 237 343 15 0 chr5 98197608 98197675 -54339584 - MIRm SINE MIR 0 276 209 2 1334 1337 86 52 5 chr5 98197729 98197939 -54339320 + L1_Mus3 LINE L1 6413 6632 -6 2 1334 294 29 0 0 chr5 98200734 98200769 -54336490 + (TTG)n Simple_repeat Simple_repeat 3 37 0 2 1334 261 0 0 0 chr5 98201092 98201121 -54336138 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1334 3024 163 94 38 chr5 98201997 98202971 -54334288 - RLTR13D1 LTR ERVK 0 1023 1 2 1334 26 30 0 0 chr5 98203006 98203039 -54334220 + AT_rich Low_complexity Low_complexity 1 33 0 2 1334 224 253 10 21 chr5 98203115 98203212 -54334047 + A-rich Low_complexity Low_complexity 2 97 0 2 1334 1237 223 77 49 chr5 98203443 98203824 -54333435 + RMER10A LTR ERVL 22 413 -29 2 1334 1141 68 18 0 chr5 98203824 98203987 -54333272 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 2 1334 2437 117 55 81 chr5 98204021 98204516 -54332743 - RLTR45 LTR ERVK 0 482 1 2 1334 997 246 121 6 chr5 98205127 98205251 -54332008 - Lx9 LINE L1 -2 7642 7485 2 1334 201 94 0 0 chr5 98205251 98205283 -54331976 + (TGG)n Simple_repeat Simple_repeat 1 32 0 2 1334 997 246 121 6 chr5 98205283 98205506 -54331753 - Lx9 LINE L1 -160 7484 7256 2 1334 472 241 146 49 chr5 98205506 98205711 -54331548 + Lx9 LINE L1 7032 7256 -388 2 1334 225 250 0 0 chr5 98205824 98205884 -54331375 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1334 887 164 6 0 chr5 98206132 98206303 -54330956 + CT-rich Low_complexity Low_complexity 2 173 0 2 1334 197 132 26 0 chr5 98206299 98206337 -54330922 + T-rich Low_complexity Low_complexity 5 43 0 2 1334 236 209 77 59 chr5 98206375 98206471 -54330788 - B1_Mur1 SINE Alu 0 149 49 2 1334 502 304 34 73 chr5 98207823 98208029 -54329230 - B3 SINE B2 -6 210 13 2 1334 322 21 43 0 chr5 98208029 98208076 -54329183 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2 1334 189 434 48 10 chr5 98208126 98208333 -54328926 - L2 LINE L2 -366 3053 2839 2 1334 432 0 0 0 chr5 98209242 98209290 -54327969 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 1334 258 81 0 0 chr5 98210556 98210593 -54326666 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 2 1334 560 233 33 41 chr5 98210607 98210728 -54326531 + RSINE1 SINE B4 8 127 -38 3 1334 893 113 0 7 chr5 98210869 98211011 -54326248 + (GAA)n Simple_repeat Simple_repeat 2 142 0 3 1334 278 208 0 0 chr5 98211071 98211119 -54326140 + B3 SINE B2 39 86 -130 3 1334 297 0 0 0 chr5 98211145 98211178 -54326081 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1334 297 75 0 0 chr5 98211178 98211218 -54326041 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1334 582 280 17 6 chr5 98211403 98211579 -54325680 + Lx7 LINE L1 6067 6244 -1452 3 1334 3587 32 0 2 chr5 98211829 98212307 -54324952 - L1Md_F3 LINE L1 -571 6013 5537 3 1334 3687 30 0 0 chr5 98212307 98212734 -54324525 + L1Md_F3 LINE L1 6137 6563 -21 3 1334 477 0 0 0 chr5 98212734 98212787 -54324472 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1334 3560 41 7 5 chr5 98212806 98213251 -54324008 - L1Md_F3 LINE L1 -2 6582 6137 3 1334 580 40 0 0 chr5 98213278 98213354 -54323905 + L1Md_T LINE L1 6496 6571 -11 3 1334 2503 48 0 9 chr5 98213377 98213695 -54323564 - L1Md_F2 LINE L1 -11 6571 6257 3 1334 341 291 118 13 chr5 98214137 98214290 -54322969 + L1MA9 LINE L1 1850 2018 -5012 3 1334 346 210 46 86 chr5 98214299 98214450 -54322809 + L1MA9 LINE L1 4049 4193 -2910 3 1334 2427 109 19 0 chr5 98214472 98214885 -54322374 + Lx LINE L1 5514 5934 -720 3 1334 351 324 130 56 chr5 98214992 98215208 -54322051 + B4 SINE B4 60 291 -1 3 1334 242 0 0 57 chr5 98215212 98215247 -54322012 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 3 1334 505 315 24 0 chr5 98215254 98215419 -54321840 + L1MA9 LINE L1 5779 5947 -1153 3 1334 518 349 115 57 chr5 98215586 98216109 -54321150 - MLT2B3 LTR ERVL 0 554 2 3 1334 449 245 97 0 chr5 98216110 98216265 -54320994 + L1MA9 LINE L1 6867 7036 -236 3 1334 26 64 0 0 chr5 98216982 98217029 -54320230 + AT_rich Low_complexity Low_complexity 1 47 0 3 1334 334 252 51 21 chr5 98218177 98218351 -54318908 - L1_Mur3 LINE L1 -1374 4769 4595 3 1334 403 315 169 41 chr5 98218356 98218896 -54318363 + L1MA5 LINE L1 4764 5372 -771 3 1334 474 256 0 0 chr5 98218902 98219039 -54318220 + (TA)n Simple_repeat Simple_repeat 2 138 0 3 1334 8648 124 8 4 chr5 98219062 98221231 -54316028 - L1_Mus3 LINE L1 -3 6635 4460 3 1334 5207 141 31 7 chr5 98221225 98222315 -54314944 - L1VL2 LINE L1 -2399 1216 96 3 1334 555 295 77 88 chr5 98222321 98222774 -54314485 + L1MA5 LINE L1 5395 5842 -458 3 1334 342 123 0 0 chr5 98224921 98224978 -54312281 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 3 1334 785 320 54 29 chr5 98226826 98227103 -54310156 - B4A SINE B4 -8 284 1 3 1334 203 256 0 0 chr5 98227135 98227178 -54310081 - L2 LINE L2 -664 2755 2713 3 1334 2654 158 5 16 chr5 98227355 98227799 -54309460 - Lx4A LINE L1 -10 7048 6610 3 1334 545 239 22 36 chr5 98227860 98227999 -54309260 + B3A SINE B2 7 143 -55 3 1334 218 247 34 0 chr5 98228024 98228113 -54309146 + (TA)n Simple_repeat Simple_repeat 1 92 0 3 1334 543 159 0 0 chr5 98229743 98229875 -54307384 + CT-rich Low_complexity Low_complexity 1 132 0 3 1334 450 0 0 0 chr5 98229875 98229925 -54307334 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1334 1025 85 43 0 chr5 98230369 98230510 -54306749 + B1_Mus1 SINE Alu 2 148 0 3 1334 1304 307 99 7 chr5 98231025 98231475 -54305784 + RCHARR1 DNA MER1_type 7 498 -476 3 1334 290 325 12 0 chr5 98231475 98231558 -54305701 + B4A SINE B4 2 85 -207 3 1334 306 234 68 30 chr5 98231630 98231762 -54305497 + RCHARR1 DNA MER1_type 490 626 -348 3 1334 507 160 0 0 chr5 98231770 98231864 -54305395 + (TA)n Simple_repeat Simple_repeat 2 95 0 3 1334 849 271 68 28 chr5 98231864 98232187 -54305072 + RCHARR1 DNA MER1_type 638 973 -1 3 1334 1760 233 26 33 chr5 98232649 98233071 -54304188 - MTD LTR MaLR 0 419 1 3 1334 486 0 0 0 chr5 98234064 98234118 -54303141 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1334 716 276 5 31 chr5 98234219 98234338 -54302921 - Lx9 LINE L1 -633 7011 6894 3 1334 3269 37 25 0 chr5 98234338 98234739 -54302520 + RLTR10A LTR ERVK 1 411 0 3 1334 716 276 5 31 chr5 98234739 98234843 -54302416 - Lx9 LINE L1 -751 6893 6794 3 1334 271 197 0 16 chr5 98234839 98234901 -54302358 + Lx9 LINE L1 7407 7467 -177 3 1334 1137 72 0 0 chr5 98234903 98235055 -54302204 + (GGGAGA)n Simple_repeat Simple_repeat 3 154 0 3 1334 1203 59 0 0 chr5 98235129 98235283 -54301976 + B2_Mm2 SINE B2 2 156 -37 3 1334 243 0 0 0 chr5 98235283 98235310 -54301949 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 1334 1125 105 12 6 chr5 98235310 98235327 -54301932 + B2_Mm1t SINE B2 157 174 -19 3 1334 183 173 0 0 chr5 98235662 98235714 -54301545 + CT-rich Low_complexity Low_complexity 1 52 0 3 1334 484 312 149 8 chr5 98236225 98236467 -54300792 + MLT1B LTR MaLR 50 325 -65 3 1334 27 23 0 22 chr5 98236911 98236931 -54300328 + AT_rich Low_complexity Low_complexity 1 20 0 3 1334 573 269 88 0 chr5 98236931 98237124 -54300135 + B3 SINE B2 1 210 -6 3 1334 27 23 0 22 chr5 98237124 98237148 -54300111 + AT_rich Low_complexity Low_complexity 1 24 0 3 1334 316 333 26 9 chr5 98237658 98237773 -54299486 - B4A SINE B4 -175 117 1 3 1334 24 32 0 0 chr5 98239367 98239398 -54297861 + AT_rich Low_complexity Low_complexity 1 31 0 3 1334 362 353 80 34 chr5 98239544 98239939 -54297320 + L1MD3 LINE L1 7299 7925 -70 3 1334 1155 92 6 0 chr5 98240313 98240486 -54296773 - L1_Mus1 LINE L1 -549 6018 5845 3 1334 1703 84 0 0 chr5 98240486 98240712 -54296547 + L1_Mus1 LINE L1 6342 6567 0 3 1334 532 40 0 26 chr5 98241331 98241408 -54295851 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 3 1334 1570 256 101 70 chr5 98241555 98242678 -54294581 - RMER1A Other Other -2 1064 1 3 1334 586 360 0 0 chr5 98242920 98243106 -54294153 + B4 SINE B4 2 187 -105 3 1334 22 0 0 0 chr5 98243506 98243528 -54293731 + AT_rich Low_complexity Low_complexity 1 22 0 3 1334 531 43 0 0 chr5 98243593 98243663 -54293596 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 3 1334 252 247 35 23 chr5 98243738 98243825 -54293434 + Lx9 LINE L1 7127 7214 -430 3 1334 191 125 0 24 chr5 98244043 98244055 -54293204 + (GA)n Simple_repeat Simple_repeat 1 12 0 3 1334 366 85 0 0 chr5 98244055 98244114 -54293145 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 3 1334 191 125 0 24 chr5 98244114 98244142 -54293117 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1334 486 0 0 0 chr5 98244184 98244238 -54293021 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1334 704 316 6 0 chr5 98244241 98244399 -54292860 - B3A SINE B2 -38 160 2 3 1334 1522 90 13 5 chr5 98245604 98245828 -54291431 + L1Md_F2 LINE L1 6357 6582 0 3 1334 183 80 0 0 chr5 98245857 98245882 -54291377 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3 1334 477 0 0 0 chr5 98246271 98246324 -54290935 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1334 393 22 0 0 chr5 98246324 98246369 -54290890 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1334 867 251 0 0 chr5 98246370 98246537 -54290722 - B3 SINE B2 -49 167 1 3 1334 487 237 65 22 chr5 98246928 98247066 -54290193 + B1_Mur2 SINE Alu 1 144 -5 3 1334 7571 147 64 6 chr5 98247358 98248732 -54288527 - ORR1A2-int LTR MaLR -527 1436 1 3 1334 2261 106 6 15 chr5 98248735 98249062 -54288197 - ORR1A2 LTR MaLR -3 324 1 3 1334 507 136 0 0 chr5 98249754 98249864 -54287395 + (GA)n Simple_repeat Simple_repeat 1 110 0 3 1334 2882 246 120 7 chr5 98250215 98250648 -54286611 + RCHARR1 DNA MER1_type 1 457 -517 3 1334 189 0 0 0 chr5 98250648 98250669 -54286590 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 3 1334 2882 246 120 7 chr5 98250669 98251107 -54286152 + RCHARR1 DNA MER1_type 458 970 -4 3 1334 187 171 0 28 chr5 98251319 98251355 -54285904 - MIRm SINE MIR -86 190 156 3 1334 203 146 24 0 chr5 98251647 98251688 -54285571 + (TTG)n Simple_repeat Simple_repeat 2 43 0 3 1334 612 298 55 75 chr5 98252039 98252347 -54284912 - LTR86A1 LTR ERVL -16 497 196 3 1334 351 335 131 61 chr5 98252338 98252650 -54284609 + MLT1D LTR MaLR 8 341 -164 3 1334 585 42 0 0 chr5 98252823 98252895 -54284364 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 3 1334 2168 86 86 0 chr5 98252907 98253208 -54284051 - ORR1A2 LTR MaLR 0 327 1 3 1334 304 254 122 58 chr5 98253209 98253397 -54283862 + Lx8 LINE L1 7243 7442 -31 3 1334 550 330 58 18 chr5 98255300 98255627 -54281632 - L1M4b LINE L1 -2889 4117 3778 3 1334 331 246 58 58 chr5 98255692 98255813 -54281446 - L1M4b LINE L1 -3783 3223 3103 3 1334 306 302 110 3 chr5 98255964 98256283 -54280976 - L1M4b LINE L1 -4442 2892 2540 3 1334 346 289 112 6 chr5 98256324 98256484 -54280775 - L1M4b LINE L1 -4928 2406 2230 3 1334 6858 112 16 11 chr5 98256552 98257903 -54279356 - Lx LINE L1 -4 6650 5291 3 1334 234 0 0 0 chr5 98257942 98257968 -54279291 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1334 587 316 163 49 chr5 98258234 98258846 -54278413 - L1M4b LINE L1 -5916 1418 737 3 1334 393 204 0 0 chr5 98258904 98259036 -54278223 + CT-rich Low_complexity Low_complexity 2 133 0 3 1334 1140 79 0 0 chr5 98259039 98259217 -54278042 + (TC)n Simple_repeat Simple_repeat 1 178 0 3 1334 311 324 77 0 chr5 98259513 98259683 -54277576 - L1M4b LINE L1 -7023 311 129 3 1334 22 35 0 0 chr5 98259739 98259768 -54277491 + AT_rich Low_complexity Low_complexity 1 29 0 3 1334 473 343 30 10 chr5 98263162 98263362 -54273897 - MIR SINE MIR -1 261 58 3 1334 23 0 0 0 chr5 98264836 98264859 -54272400 + AT_rich Low_complexity Low_complexity 1 23 0 3 1334 482 349 83 28 chr5 98265103 98265283 -54271976 + B3 SINE B2 2 191 -25 3 1334 401 357 84 80 chr5 98267317 98267569 -54269690 + MLT1G3 LTR MaLR 70 357 -238 3 1334 3337 135 147 5 chr5 98267953 98268558 -54268701 - RLTR17 LTR ERVK -1 691 1 3 1334 1259 117 297 71 chr5 98269050 98269316 -54267943 + ORR1A3 LTR MaLR 1 326 0 3 1334 266 274 55 77 chr5 98269483 98269574 -54267685 + MTEb LTR MaLR 9 97 -262 3 1334 394 301 44 76 chr5 98269626 98269784 -54267475 + MTEb LTR MaLR 219 371 -8 3 1334 211 336 188 44 chr5 98269786 98270604 -54266655 + L2 LINE L2 1396 2331 -1088 3 1334 410 386 243 0 chr5 98270935 98271203 -54266056 + MER47B DNA MER2_type 86 418 0 3 1334 764 279 125 95 chr5 98272841 98272885 -54264374 - ORR1E LTR MaLR -6 353 317 3 1334 243 0 0 0 chr5 98272885 98272912 -54264347 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1334 764 279 125 95 chr5 98272912 98273204 -54264055 - ORR1E LTR MaLR -43 316 8 3 1334 22 35 0 0 chr5 98273556 98273585 -54263674 + AT_rich Low_complexity Low_complexity 1 29 0 3 1334 264 264 27 14 chr5 98273635 98273708 -54263551 - PB1D10 SINE Alu -7 110 37 3 1334 325 330 11 0 chr5 98275439 98275533 -54261726 + MTE2b LTR MaLR 8 102 -277 3 1334 837 284 64 40 chr5 98275544 98275841 -54261418 + MTE2b LTR MaLR 75 378 -1 3 1334 583 60 29 19 chr5 98277636 98277739 -54259520 + (TCTCC)n Simple_repeat Simple_repeat 4 107 0 4 1334 45 34 0 0 chr5 98279174 98279233 -54258026 + AT_rich Low_complexity Low_complexity 1 59 0 4 1334 234 0 0 0 chr5 98279976 98280002 -54257257 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1334 274 236 98 2 chr5 98280448 98280532 -54256727 + L1MC1 LINE L1 6249 6342 -2 4 1334 261 0 0 0 chr5 98281169 98281198 -54256061 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1334 546 225 133 23 chr5 98281786 98281959 -54255300 + B4A SINE B4 86 277 -15 4 1334 203 162 0 0 chr5 98282004 98282041 -54255218 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1334 791 243 89 9 chr5 98282121 98282345 -54254914 - ORR1D1 LTR MaLR -91 283 42 4 1334 646 252 28 0 chr5 98282589 98282732 -54254527 + B1_Mur1 SINE Alu 3 149 0 4 1334 209 219 0 30 chr5 98283081 98283108 -54254151 + A-rich Low_complexity Low_complexity 1 27 0 4 1334 1860 74 0 0 chr5 98283108 98283421 -54253838 + L1_Mus1 LINE L1 6326 6567 0 4 1334 4644 76 3 5 chr5 98283966 98284587 -54252672 + L1_Mus1 LINE L1 5018 5637 -246 4 1334 5787 61 0 0 chr5 98284588 98285308 -54251951 + L1_Mus1 LINE L1 5848 6567 0 4 1334 249 206 52 52 chr5 98285442 98285519 -54251740 - MTE2a LTR MaLR -30 349 273 4 1334 387 0 0 0 chr5 98287264 98287307 -54249952 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1334 678 25 0 0 chr5 98287308 98287388 -54249871 + (CA)n Simple_repeat Simple_repeat 2 81 0 4 1334 1108 248 126 18 chr5 98287487 98287828 -54249431 - Lx7 LINE L1 -282 7414 7037 4 1334 366 216 0 0 chr5 98287823 98287897 -54249362 + Lx7 LINE L1 6978 7051 -645 4 1334 385 329 51 4 chr5 98287988 98288223 -54249036 - L1MB1 LINE L1 -1 6167 5922 4 1334 318 268 188 19 chr5 98288268 98288428 -54248831 - L1M5 LINE L1 -722 5442 5256 4 1334 22 0 0 0 chr5 98288557 98288579 -54248680 + AT_rich Low_complexity Low_complexity 1 22 0 4 1334 29228 96 13 84 chr5 98288846 98294407 -54242852 + L1Md_F2 LINE L1 422 5585 -298 4 1334 7241 69 21 13 chr5 98294408 98295383 -54241876 + L1Md_F2 LINE L1 5587 6569 -13 4 1334 28 0 0 0 chr5 98295658 98295686 -54241573 + AT_rich Low_complexity Low_complexity 1 28 0 4 1334 798 72 93 7 chr5 98296594 98296734 -54240525 + Lx LINE L1 6501 6652 -2 4 1334 500 42 14 0 chr5 98297467 98297538 -54239721 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 4 1334 387 48 0 0 chr5 98297701 98297764 -54239495 + L1_Mus3 LINE L1 6574 6636 -2 4 1334 213 154 0 0 chr5 98298906 98298945 -54238314 + (TTA)n Simple_repeat Simple_repeat 3 41 0 4 1334 1018 239 83 34 chr5 98299099 98299450 -54237809 + Lx9 LINE L1 7183 7550 -94 4 1334 1018 211 10 5 chr5 98299468 98299677 -54237582 - B3 SINE B2 -5 211 2 4 1334 191 331 119 16 chr5 98300635 98300761 -54236498 - MIR SINE MIR -117 145 7 4 1334 468 0 0 0 chr5 98300884 98300936 -54236323 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1334 3758 169 30 10 chr5 98300937 98301626 -54235633 + RMER6D LTR ERVK 18 720 0 4 1334 234 241 0 0 chr5 98301681 98301739 -54235520 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1334 354 213 25 100 chr5 98301739 98301859 -54235400 + HAL1-3A_ME LINE L1 1976 2086 -772 4 1334 21 36 0 0 chr5 98302115 98302143 -54235116 + AT_rich Low_complexity Low_complexity 1 28 0 4 1334 204 346 74 37 chr5 98302177 98302285 -54234974 - L2c LINE L2 -10 3377 3266 4 1334 273 209 0 0 chr5 98302376 98302443 -54234816 + (TG)n Simple_repeat Simple_repeat 1 67 0 4 1334 1073 215 9 18 chr5 98302689 98302916 -54234343 + URR1B DNA MER1_type 1 225 0 4 166 321 261 50 13 chr5 98303974 98304133 -54233126 - L1MB1 LINE L1 -1 6333 6169 4 1335 487 295 135 45 chr5 98304768 98305102 -54232157 - L1MB1 LINE L1 -71 6118 5755 4 1335 307 278 41 41 chr5 98306796 98306931 -54230328 + L1M5 LINE L1 5714 5854 -325 4 1335 199 189 0 0 chr5 98308261 98308298 -54228961 - L2 LINE L2 -592 2827 2791 4 1335 351 0 0 0 chr5 98312040 98312079 -54225180 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1335 1059 99 0 0 chr5 98319144 98319286 -54217973 + B1_Mus1 SINE Alu 2 143 -5 4 1335 426 0 132 0 chr5 98319304 98319418 -54217841 + (GGGA)n Simple_repeat Simple_repeat 2 130 0 4 1335 798 11 0 0 chr5 98319421 98319512 -54217747 + (GAA)n Simple_repeat Simple_repeat 1 91 0 4 1335 232 300 14 0 chr5 98319608 98319678 -54217581 + L4 LINE RTE 1745 1815 -214 4 1335 483 155 0 0 chr5 98320077 98320161 -54217098 + A-rich Low_complexity Low_complexity 1 84 0 4 1335 317 242 73 10 chr5 98320299 98320395 -54216864 + ID_B1 SINE B4 78 179 -45 4 1335 207 0 0 0 chr5 98321168 98321191 -54216068 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1335 264 77 0 0 chr5 98321717 98321756 -54215503 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1335 432 0 0 0 chr5 98321756 98321803 -54215456 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1335 198 222 0 0 chr5 98322114 98322168 -54215091 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1335 462 294 37 0 chr5 98322210 98322346 -54214913 + B4A SINE B4 124 264 -28 4 1335 1008 25 0 0 chr5 98322888 98323007 -54214252 + (GA)n Simple_repeat Simple_repeat 2 120 0 4 1335 2758 138 28 0 chr5 98323186 98323612 -54213647 + Lx4A LINE L1 6620 7057 -1 4 1335 196 100 50 0 chr5 98323679 98323719 -54213540 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1335 4642 35 2 14 chr5 98325049 98325624 -54211635 + L1Md_F2 LINE L1 6015 6582 0 4 1335 332 371 39 62 chr5 98325702 98325880 -54211379 - B3A SINE B2 -22 176 3 4 1335 22 35 0 0 chr5 98326085 98326114 -54211145 + AT_rich Low_complexity Low_complexity 1 29 0 4 1335 1019 100 0 11 chr5 98327001 98327183 -54210076 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1335 642 75 0 0 chr5 98327386 98327479 -54209780 + (GA)n Simple_repeat Simple_repeat 1 93 0 4 1335 506 307 101 13 chr5 98327479 98327707 -54209552 - B4A SINE B4 -12 280 33 4 1335 790 182 6 57 chr5 98327957 98328114 -54209145 + B1_Mur3 SINE Alu 1 149 0 4 1335 249 33 0 0 chr5 98328124 98328154 -54209105 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1335 653 287 25 25 chr5 98329053 98329253 -54208006 + B3 SINE B2 1 200 -16 4 1335 867 297 40 40 chr5 98329563 98329840 -54207419 + B4 SINE B4 6 282 -10 4 1335 195 129 0 0 chr5 98329845 98329876 -54207383 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1335 661 62 94 0 chr5 98331987 98332083 -54205176 + B2_Mm2 SINE B2 3 107 -88 4 1335 252 0 0 0 chr5 98332087 98332115 -54205144 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1335 237 307 93 62 chr5 98332193 98332450 -54204809 + L1MA9 LINE L1 5842 6106 -206 4 1335 1992 108 79 0 chr5 98332515 98332831 -54204428 + Lx2 LINE L1 6657 6997 0 4 1335 1008 60 82 0 chr5 98332841 98332975 -54204284 + B1_Mm SINE Alu 1 145 -2 4 1335 450 36 0 0 chr5 98332978 98333034 -54204225 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 4 1335 43 71 0 0 chr5 98333075 98333160 -54204099 + AT_rich Low_complexity Low_complexity 1 85 0 4 1335 391 306 75 54 chr5 98333544 98333824 -54203435 + Lx9 LINE L1 6885 7170 -474 4 1335 282 56 0 0 chr5 98333926 98333962 -54203297 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1335 324 299 96 64 chr5 98334052 98334395 -54202864 + L1MB2 LINE L1 5814 6167 -4 4 1335 23 33 0 0 chr5 98334641 98334671 -54202588 + AT_rich Low_complexity Low_complexity 1 30 0 4 1335 21 36 0 0 chr5 98334712 98334740 -54202519 + AT_rich Low_complexity Low_complexity 1 28 0 4 1335 381 280 22 22 chr5 98335418 98335553 -54201706 + B1F2 SINE Alu 5 139 -10 4 1335 243 332 142 20 chr5 98335791 98335988 -54201271 - Tigger15a DNA TcMar -324 391 171 4 1335 22 0 0 0 chr5 98336425 98336447 -54200812 + AT_rich Low_complexity Low_complexity 1 22 0 4 1335 717 12 0 0 chr5 98336522 98336604 -54200655 + (TC)n Simple_repeat Simple_repeat 1 82 0 4 1335 227 255 0 0 chr5 98337403 98337454 -54199805 + CT-rich Low_complexity Low_complexity 2 52 0 4 1335 393 39 0 0 chr5 98337611 98337662 -54199597 + (CATA)n Simple_repeat Simple_repeat 2 52 0 4 1335 707 330 79 18 chr5 98338030 98338558 -54198701 - Tigger7 DNA MER2_type -1896 595 7 4 1335 423 0 0 0 chr5 98338769 98338816 -54198443 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1335 441 303 26 26 chr5 98339124 98339280 -54197979 - RSINE1 SINE B4 -8 157 2 4 1335 231 114 0 0 chr5 98339760 98339795 -54197464 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1335 217 0 61 0 chr5 98339999 98340032 -54197227 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1335 942 141 13 13 chr5 98340203 98340361 -54196898 + Lx4A LINE L1 6898 7055 -3 4 1335 770 0 11 0 chr5 98340361 98340451 -54196808 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 4 1335 518 335 26 11 chr5 98340606 98340733 -54196526 - MLT1A0 LTR MaLR -16 374 217 4 1335 1452 110 18 4 chr5 98340733 98340962 -54196297 - Lx LINE L1 -2 6652 6421 4 1335 518 360 67 17 chr5 98340962 98341165 -54196094 - MLT1A0 LTR MaLR -149 216 3 4 1335 254 278 20 95 chr5 98341221 98341368 -54195891 - MIRb SINE MIR -81 187 52 4 1335 906 196 126 0 chr5 98343275 98343474 -54193785 + URR1A DNA MER1_type 1 224 -2 4 1335 396 0 0 0 chr5 98343792 98343836 -54193423 + (TA)n Simple_repeat Simple_repeat 2 45 0 4 1335 252 143 0 0 chr5 98343858 98343900 -54193359 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1335 210 313 39 39 chr5 98344788 98344891 -54192368 - MIR SINE MIR -11 251 149 4 1335 211 317 86 86 chr5 98345473 98345625 -54191634 - MIRc SINE MIR -67 201 50 4 1335 1151 136 72 10 chr5 98345674 98345867 -54191392 - URR1A DNA MER1_type 0 226 22 4 1335 549 274 59 0 chr5 98347781 98347916 -54189343 + RSINE1 SINE B4 2 144 -21 4 1335 204 238 0 0 chr5 98347934 98347997 -54189262 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1335 3219 35 0 15 chr5 98348137 98348541 -54188718 + L1Md_F2 LINE L1 6182 6579 -3 5 1335 234 0 0 0 chr5 98348901 98348927 -54188332 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1335 386 292 15 44 chr5 98349786 98349922 -54187337 + B4 SINE B4 3 134 -158 5 1335 320 323 132 30 chr5 98350044 98350210 -54187049 + B4A SINE B4 67 249 -43 5 1335 909 238 19 38 chr5 98350310 98350520 -54186739 - B3 SINE B2 0 216 11 5 1335 433 241 0 0 chr5 98350524 98350611 -54186648 - B1F SINE Alu -59 90 4 5 1335 252 59 0 0 chr5 98351884 98351918 -54185341 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1335 343 268 128 45 chr5 98351969 98352102 -54185157 + MIR SINE MIR 87 230 -32 5 1335 403 125 0 45 chr5 98353466 98353533 -54183726 - HAL1-3A_ME LINE L1 -840 2018 1955 5 1335 283 275 164 9 chr5 98354149 98354259 -54183000 + B1F1 SINE Alu 1 127 0 5 1335 399 41 0 0 chr5 98356161 98356210 -54181049 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1335 386 127 14 0 chr5 98358515 98358586 -54178673 + (TG)n Simple_repeat Simple_repeat 2 73 0 5 1335 21 0 0 0 chr5 98358768 98358789 -54178470 + AT_rich Low_complexity Low_complexity 1 21 0 5 1335 936 199 82 50 chr5 98358812 98359129 -54178130 + Lx9 LINE L1 7316 7642 -2 5 1335 207 172 0 0 chr5 98359219 98359243 -54178016 + T-rich Low_complexity Low_complexity 43 66 0 5 1335 266 0 29 0 chr5 98359243 98359277 -54177982 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 5 1335 207 172 0 0 chr5 98359277 98359316 -54177943 + T-rich Low_complexity Low_complexity 4 42 0 5 1335 372 279 92 15 chr5 98359337 98359468 -54177791 + B1F1 SINE Alu 9 149 0 5 1335 21 89 0 0 chr5 98359653 98359709 -54177550 + AT_rich Low_complexity Low_complexity 1 56 0 5 1335 22 0 0 0 chr5 98359745 98359767 -54177492 + AT_rich Low_complexity Low_complexity 1 22 0 5 1335 413 284 64 44 chr5 98359776 98359979 -54177280 + B3 SINE B2 2 208 -8 5 1335 286 129 32 0 chr5 98359979 98360041 -54177218 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1335 551 117 18 41 chr5 98360430 98360599 -54176660 + (TA)n Simple_repeat Simple_repeat 2 166 0 5 1335 633 115 76 139 chr5 98360614 98360786 -54176473 - Lx9 LINE L1 -127 7517 7357 5 1335 933 245 10 0 chr5 98361339 98361539 -54175720 + B3 SINE B2 1 202 -14 5 1335 407 374 11 7 chr5 98361615 98361877 -54175382 + Lx9 LINE L1 7072 7377 -267 5 1335 475 75 21 11 chr5 98361945 98362040 -54175219 + L1_Mus4 LINE L1 6515 6610 -26 5 1335 565 29 0 0 chr5 98362040 98362110 -54175149 + B1_Mm SINE Alu 77 146 -1 5 1335 239 29 0 54 chr5 98362110 98362147 -54175112 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 5 1335 471 78 0 0 chr5 98362145 98362209 -54175050 + (GAAA)n Simple_repeat Simple_repeat 3 66 0 5 1335 312 27 0 0 chr5 98364020 98364057 -54173202 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1335 195 42 0 0 chr5 98364059 98364083 -54173176 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1335 22 35 0 0 chr5 98364549 98364578 -54172681 + GC_rich Low_complexity Low_complexity 1 29 0 5 1335 345 109 0 0 chr5 98365113 98365168 -54172091 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1335 620 299 0 23 chr5 98367796 98367967 -54169292 - B4 SINE B4 -3 289 123 5 1335 524 77 13 0 chr5 98367968 98368046 -54169213 + (TC)n Simple_repeat Simple_repeat 2 80 0 5 1335 1105 67 0 104 chr5 98368103 98368286 -54168973 - L1_Mus2 LINE L1 -1 6565 6402 5 1335 268 331 70 21 chr5 98368462 98368604 -54168655 - MIR SINE MIR -71 191 43 5 1335 2866 67 13 10 chr5 98368811 98369203 -54168056 - L1_Mus3 LINE L1 0 6638 6246 5 1335 561 63 1 4 chr5 98369234 98369313 -54167946 - MTB_Mm LTR MaLR 0 407 298 5 1335 4785 56 5 17 chr5 98369914 98370547 -54166712 + L1Md_F2 LINE L1 5957 6581 -1 5 1335 490 24 35 23 chr5 98370568 98370654 -54166605 + (CAAAA)n Simple_repeat Simple_repeat 2 88 0 5 1335 400 171 35 188 chr5 98370676 98370820 -54166439 + L1VL1 LINE L1 236 357 -6065 5 1335 326 286 7 29 chr5 98370896 98371033 -54166226 + L1Md_F LINE L1 670 803 -5813 5 1335 1980 198 12 0 chr5 98371041 98371465 -54165794 + L1Md_F LINE L1 725 1153 -5463 5 1335 16125 104 3 83 chr5 98371461 98371833 -54165426 + L1Md_F LINE L1 1720 2067 -3816 5 1335 227 283 0 0 chr5 98371833 98371886 -54165373 + B3A SINE B2 1 53 -145 5 1335 16125 104 3 83 chr5 98371886 98374441 -54162818 + L1Md_F LINE L1 2068 4461 -1422 5 1335 1148 77 0 0 chr5 98374441 98374597 -54162662 + L1_Mus2 LINE L1 6410 6565 -1 5 1335 760 71 18 0 chr5 98374953 98375065 -54162194 + (GAAAA)n Simple_repeat Simple_repeat 3 116 0 5 1335 22 0 0 0 chr5 98375576 98375598 -54161661 + AT_rich Low_complexity Low_complexity 1 22 0 5 1335 21 0 0 0 chr5 98377389 98377410 -54159849 + AT_rich Low_complexity Low_complexity 1 21 0 5 1335 305 332 24 17 chr5 98378878 98379045 -54158214 + GA-rich Low_complexity Low_complexity 1 168 0 5 1335 250 408 43 21 chr5 98379166 98379354 -54157905 - L3 LINE CR1 -79 4410 4219 5 1335 433 71 14 14 chr5 98379363 98379434 -54157825 + (CA)n Simple_repeat Simple_repeat 1 71 0 5 1335 600 264 18 83 chr5 98380454 98380623 -54156636 + B3A SINE B2 25 182 -16 5 1335 465 180 0 0 chr5 98380623 98380712 -54156547 + (CA)n Simple_repeat Simple_repeat 1 89 0 5 1335 22 0 0 0 chr5 98382619 98382641 -54154618 + AT_rich Low_complexity Low_complexity 1 22 0 5 1335 185 94 31 0 chr5 98382971 98383003 -54154256 + (TA)n Simple_repeat Simple_repeat 1 33 0 5 1335 489 325 82 67 chr5 98384411 98384664 -54152595 - Charlie4a DNA MER1_type -15 493 255 5 1335 3168 76 2 0 chr5 98384664 98385070 -54152189 - MTB_Mm LTR MaLR 0 407 1 5 1335 489 325 82 67 chr5 98385070 98385267 -54151992 - Charlie4a DNA MER1_type -254 254 36 5 1335 524 283 14 28 chr5 98386266 98386408 -54150851 - RSINE1 SINE B4 -21 144 5 5 1335 503 256 117 112 chr5 98386480 98386732 -54150527 - MLT1D LTR MaLR -8 497 204 5 1335 791 148 0 24 chr5 98386966 98387226 -54150033 + (CA)n Simple_repeat Simple_repeat 1 253 0 5 1335 297 0 0 0 chr5 98388564 98388597 -54148662 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1335 364 293 189 21 chr5 98388609 98388967 -54148292 + MLT1E2 LTR MaLR 1 403 -102 5 1335 216 330 131 65 chr5 98392657 98393085 -54144174 + L2 LINE L2 2528 2983 -436 5 1335 234 161 36 24 chr5 98393314 98393397 -54143862 + (TTTAA)n Simple_repeat Simple_repeat 2 85 0 5 1335 258 100 16 32 chr5 98394005 98394067 -54143192 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 5 1335 1366 188 24 133 chr5 98395763 98396223 -54141036 - RMER17C LTR ERVK 0 410 1 5 1335 293 68 23 0 chr5 98398366 98398410 -54138849 + (CAGA)n Simple_repeat Simple_repeat 4 48 0 5 1335 336 255 0 0 chr5 98398996 98399098 -54138161 + (TA)n Simple_repeat Simple_repeat 2 103 0 5 1335 253 308 61 8 chr5 98399267 98399398 -54137861 - L3 LINE CR1 -191 4298 4161 5 1335 433 343 67 7 chr5 98401903 98402038 -54135221 + RSINE1 SINE B4 21 163 -2 5 1335 23 33 0 0 chr5 98402073 98402103 -54135156 + AT_rich Low_complexity Low_complexity 1 30 0 5 1335 250 353 212 38 chr5 98402553 98403024 -54134235 - L2 LINE L2 -339 3080 2528 5 1335 306 0 0 0 chr5 98403287 98403321 -54133938 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1335 315 179 0 18 chr5 98404030 98404087 -54133172 + ID_B1 SINE B4 163 218 -6 5 1335 414 0 0 0 chr5 98404215 98404261 -54132998 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1335 186 189 0 0 chr5 98404523 98404560 -54132699 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1335 465 90 0 0 chr5 98405754 98405821 -54131438 + (T)n Simple_repeat Simple_repeat 1 67 0 5 1335 1146 48 13 20 chr5 98405831 98405980 -54131279 - B1_Mus1 SINE Alu 0 148 1 5 1335 830 68 0 17 chr5 98406233 98406352 -54130907 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 5 1335 833 194 189 0 chr5 98406359 98406539 -54130720 + B3 SINE B2 3 216 0 5 1335 267 103 0 0 chr5 98406726 98406765 -54130494 + (GAAA)n Simple_repeat Simple_repeat 3 41 0 5 1335 770 273 134 46 chr5 98407396 98407791 -54129468 - MER57F LTR ERV1 -6 430 1 5 1335 234 0 0 0 chr5 98409904 98409930 -54127329 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 5 1335 23 0 0 0 chr5 98411017 98411040 -54126219 + AT_rich Low_complexity Low_complexity 1 23 0 5 1335 249 323 0 0 chr5 98412318 98412383 -54124876 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1335 210 118 0 0 chr5 98412391 98412425 -54124834 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 5 1335 764 268 33 14 chr5 98412511 98412723 -54124536 + B3 SINE B2 1 216 0 5 1335 1431 301 53 22 chr5 98412736 98413623 -54123636 + L1M2 LINE L1 3772 4685 -1458 5 1335 703 289 89 63 chr5 98414316 98415027 -54122232 + L1M2 LINE L1 4737 5408 -439 5 1335 268 196 39 158 chr5 98415064 98415191 -54122068 + MT2A LTR ERVL 165 276 -257 5 1335 275 301 12 0 chr5 98415200 98415283 -54121976 + (CATA)n Simple_repeat Simple_repeat 1 84 0 5 1335 478 183 148 0 chr5 98415407 98415522 -54121737 + B1_Mus1 SINE Alu 13 144 -4 5 1335 540 0 0 0 chr5 98415523 98415583 -54121676 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 5 1335 2832 62 33 0 chr5 98416992 98417382 -54119877 - L1_Mus3 LINE L1 -383 6255 5853 5 1335 2552 77 6 6 chr5 98417381 98417746 -54119513 + L1_Mus3 LINE L1 6250 6614 -24 5 1335 33986 53 1 4 chr5 98417744 98423848 -54113411 + L1Md_T LINE L1 1 5589 -297 5 1335 8432 35 0 0 chr5 98423848 98424903 -54112356 + L1Md_T LINE L1 5590 6585 0 5 1335 628 198 9 0 chr5 98425943 98426059 -54111200 - MTD LTR MaLR -302 117 1 5 1335 205 167 36 18 chr5 98426324 98426379 -54110880 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 5 1335 436 254 102 0 chr5 98426379 98426497 -54110762 - ID_B1 SINE B4 0 224 95 5 1335 785 251 53 76 chr5 98426558 98426821 -54110438 + B4 SINE B4 36 292 0 5 1335 1406 57 0 6 chr5 98427083 98427260 -54109999 + B2_Mm2 SINE B2 2 177 -18 6 1335 324 0 0 0 chr5 98429186 98429222 -54108037 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6 1335 198 0 0 0 chr5 98432477 98432499 -54104760 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1335 496 197 0 29 chr5 98434516 98434652 -54102607 + (TGAA)n Simple_repeat Simple_repeat 3 134 0 6 1335 230 219 0 0 chr5 98434737 98434778 -54102481 + polypyrimidine Low_complexity Low_complexity 2 42 0 6 1335 629 279 29 0 chr5 98434784 98434920 -54102339 - B1_Mur1 SINE Alu -1 148 9 6 166 316 175 48 0 chr5 98435035 98435098 -54102161 - RLTR21 LTR ERVK -155 1417 1352 6 1336 1326 41 12 6 chr5 98435094 98435267 -54101992 + LTRIS2 LTR ERV1 391 564 0 6 1336 225 0 0 0 chr5 98435260 98435287 -54101972 + RLTR6_Mm LTR ERV1 613 639 -15 6 1336 619 95 0 2 chr5 98435482 98435586 -54101673 + MuRRS4-int LTR ERV1 139 288 -3011 6 1336 881 157 61 17 chr5 98435938 98436119 -54101140 + RMER16-int LTR ERVK 142 330 -5076 6 1336 3813 138 90 18 chr5 98436104 98436815 -54100444 + RMER16-int LTR ERVK 683 1444 -3962 6 1336 960 213 127 22 chr5 98436806 98437269 -54099990 + MuRRS4-int LTR ERV1 760 1271 -3792 6 1336 23679 27 0 0 chr5 98437283 98440219 -54097040 + L1Md_T LINE L1 2651 5586 -297 6 1336 8944 9 0 0 chr5 98440219 98441215 -54096044 + L1Md_T LINE L1 5587 6582 0 6 1336 375 202 73 32 chr5 98441554 98441677 -54095582 - L1M4 LINE L1 -2267 3879 3752 6 1336 1396 143 98 25 chr5 98441676 98441962 -54095297 + Lx5 LINE L1 6741 7047 -3 6 1336 36 23 0 0 chr5 98442225 98442268 -54094991 + AT_rich Low_complexity Low_complexity 1 43 0 6 1336 189 74 0 0 chr5 98442268 98442295 -54094964 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1336 237 83 0 0 chr5 98442322 98442358 -54094901 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 6 1336 5738 136 78 51 chr5 98442370 98443451 -54093808 - RMER12 LTR ERVK -201 1121 12 6 1336 398 239 33 66 chr5 98443714 98443835 -54093424 - PB1D10 SINE Alu 0 117 1 6 1336 182 37 0 36 chr5 98443859 98443887 -54093372 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 6 1336 886 125 21 35 chr5 98443888 98444029 -54093230 - B1_Mur4 SINE Alu -9 141 3 6 1336 1163 63 21 0 chr5 98444521 98444664 -54092595 + B1_Mus2 SINE Alu 1 146 -1 6 1336 1254 68 0 0 chr5 98444746 98444892 -54092367 + B1_Mus2 SINE Alu 1 146 -1 6 1336 576 214 60 27 chr5 98446116 98446265 -54090994 - Lx6 LINE L1 -5 7455 7302 6 1336 316 310 73 53 chr5 98446684 98446809 -54090450 + HAL1-3A_ME LINE L1 2284 2412 -446 6 1336 594 41 0 0 chr5 98446809 98446882 -54090377 + (GGGGA)n Simple_repeat Simple_repeat 1 73 0 6 1336 316 310 73 53 chr5 98446882 98446906 -54090353 + HAL1-3A_ME LINE L1 2413 2436 -422 6 1336 315 269 82 12 chr5 98447473 98447596 -54089663 - PB1D10 SINE Alu -13 136 7 6 1336 585 317 22 35 chr5 98447633 98447865 -54089394 + MER2 DNA MER2_type 110 338 -7 6 1336 242 388 56 12 chr5 98447887 98448049 -54089210 + MIRb SINE MIR 14 182 -86 6 1336 421 264 19 9 chr5 98448588 98448695 -54088564 + Lx8 LINE L1 6298 6405 -1068 6 1336 498 71 56 8 chr5 98448697 98448787 -54088472 + B1_Mm SINE Alu 21 147 0 6 1336 1381 277 133 11 chr5 98448796 98449270 -54087989 + Lx8 LINE L1 6385 6916 -557 6 1336 366 210 37 0 chr5 98449273 98449354 -54087905 + Lx6 LINE L1 5809 5892 -1568 6 1336 198 0 0 0 chr5 98450508 98450530 -54086729 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 6 1336 384 227 41 10 chr5 98452243 98452341 -54084918 - L2a LINE L2 -7 3419 3319 6 1336 315 0 0 0 chr5 98452366 98452401 -54084858 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 6 1336 249 260 123 0 chr5 98452544 98452617 -54084642 - ID4 SINE ID 0 83 2 6 1336 245 330 0 15 chr5 98452870 98452971 -54084288 + MIRb SINE MIR 157 254 -14 6 1336 865 189 184 0 chr5 98453147 98453337 -54083922 - URR1B DNA MER1_type 0 225 1 6 1336 522 0 0 0 chr5 98453382 98453440 -54083819 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 6 1336 432 0 0 0 chr5 98453903 98453951 -54083308 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1336 1003 274 27 58 chr5 98454346 98454408 -54082851 - B4 SINE B4 -2 290 231 6 1336 432 0 0 0 chr5 98454408 98454456 -54082803 + (TTG)n Simple_repeat Simple_repeat 1 48 0 6 1336 1003 274 27 58 chr5 98454456 98454687 -54082572 - B4 SINE B4 -62 230 6 6 1336 320 329 17 101 chr5 98454731 98454910 -54082349 - MIR SINE MIR -55 207 44 6 1336 193 259 50 33 chr5 98455168 98455228 -54082031 - MIRb SINE MIR -8 260 200 6 1336 207 100 0 0 chr5 98455539 98455569 -54081690 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1336 369 131 0 0 chr5 98455570 98455631 -54081628 + (TATAG)n Simple_repeat Simple_repeat 2 62 0 6 1336 204 40 0 0 chr5 98455626 98455651 -54081608 + (TA)n Simple_repeat Simple_repeat 1 25 0 6 1336 219 146 0 0 chr5 98456183 98456224 -54081035 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1336 363 96 0 0 chr5 98457841 98457893 -54079366 + (A)n Simple_repeat Simple_repeat 1 52 0 6 1336 21 0 0 0 chr5 98460120 98460141 -54077118 + GC_rich Low_complexity Low_complexity 1 21 0 6 1336 2849 293 57 58 chr5 98460627 98461845 -54075414 - Lx8 LINE L1 0 7473 6257 6 1336 356 226 11 0 chr5 98462662 98462755 -54074504 + (TA)n Simple_repeat Simple_repeat 2 95 0 6 1336 654 205 60 75 chr5 98463673 98463873 -54073386 + B3A SINE B2 2 198 0 6 1336 226 340 144 0 chr5 98464483 98464580 -54072679 - LTR16A LTR ERVL -98 353 243 6 1336 510 352 39 60 chr5 98465684 98465968 -54071291 - MLT1A0 LTR MaLR -82 283 6 6 1336 1303 185 140 0 chr5 98466116 98466381 -54070878 - MTC LTR MaLR -22 399 98 6 1336 1603 218 138 41 chr5 98466382 98466846 -54070413 - RLTR11A2 LTR ERVK 0 527 19 6 1336 626 129 10 0 chr5 98466860 98466961 -54070298 - MTC LTR MaLR -319 102 1 6 1336 602 303 119 37 chr5 98466964 98467368 -54069891 + L1MD2 LINE L1 5907 6343 -16 6 1336 289 271 50 8 chr5 98467479 98467598 -54069661 + L1MC4 LINE L1 7277 7400 -642 6 1336 342 300 176 14 chr5 98467608 98467750 -54069509 + B4 SINE B4 1 165 -127 6 1336 270 0 0 0 chr5 98467983 98468013 -54069246 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1336 327 25 0 0 chr5 98468013 98468052 -54069207 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1336 359 343 141 0 chr5 98468067 98468315 -54068944 + L1MC4 LINE L1 7426 7708 -334 6 1336 572 234 7 72 chr5 98468697 98468835 -54068424 + B4A SINE B4 150 278 -14 6 1336 180 279 0 0 chr5 98468897 98468958 -54068301 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 1336 227 233 0 0 chr5 98469391 98469434 -54067825 + ORR1C2 LTR MaLR 3 45 -339 6 1336 2798 172 23 26 chr5 98469434 98470102 -54067157 + RLTR31_Mm LTR ERVK 1 559 -2 6 1336 584 118 0 0 chr5 98470105 98470181 -54067078 - tRNA-Lys-AAG tRNA tRNA 0 76 1 6 1336 396 0 0 0 chr5 98470182 98470226 -54067033 + (TA)n Simple_repeat Simple_repeat 2 45 0 6 1336 1547 219 72 44 chr5 98470240 98470307 -54066952 + RMER3D-int LTR ERVK 1 65 -2777 6 1336 1700 88 4 4 chr5 98470307 98470536 -54066723 - L1Md_F2 LINE L1 0 6582 6354 6 1336 4736 194 56 99 chr5 98470536 98472232 -54065027 + RMER3D-int LTR ERVK 66 2029 -813 6 1336 37537 29 13 9 chr5 98472247 98477476 -54059783 + L1Md_A LINE L1 335 5586 -297 6 1336 8832 38 0 4 chr5 98477476 98478474 -54058785 + L1Md_T LINE L1 5587 6580 -2 6 1336 278 305 29 41 chr5 98478488 98478659 -54058600 + RMER17D LTR ERVK 378 546 -343 6 1336 1007 172 65 15 chr5 98478554 98478755 -54058504 + ORR1C2 LTR MaLR 174 384 0 6 1336 477 0 0 0 chr5 98478771 98478824 -54058435 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1336 302 235 151 38 chr5 98478867 98478973 -54058286 + B1F SINE Alu 32 149 0 6 1336 1235 281 68 13 chr5 98479626 98480023 -54057236 - MTD LTR MaLR 0 419 1 6 1336 626 189 0 6 chr5 98480846 98481027 -54056232 + CT-rich Low_complexity Low_complexity 1 180 0 6 1336 869 298 4 48 chr5 98481983 98482254 -54055005 - Lx9 LINE L1 -426 7218 6960 6 1336 298 317 155 30 chr5 98482266 98482627 -54054632 + Lx9 LINE L1 7237 7642 -2 6 1336 21 0 0 0 chr5 98482627 98482648 -54054611 + AT_rich Low_complexity Low_complexity 1 21 0 6 1336 236 317 139 0 chr5 98483163 98483264 -54053995 + Cheshire DNA MER1_type 164 278 -2142 6 1336 183 217 145 32 chr5 98483871 98483933 -54053326 + L2 LINE L2 2508 2576 -843 6 1336 1248 61 0 0 chr5 98484970 98485117 -54052142 + B1_Mus2 SINE Alu 1 147 0 6 1336 311 136 0 17 chr5 98485475 98485535 -54051724 + (TTA)n Simple_repeat Simple_repeat 1 59 0 6 1336 525 244 29 64 chr5 98485572 98485712 -54051547 - RSINE1 SINE B4 -28 137 3 6 1336 223 250 44 59 chr5 98486612 98486680 -54050579 + B3 SINE B2 13 79 -137 6 1336 558 329 12 6 chr5 98486623 98486788 -54050471 + B4A SINE B4 24 189 -103 6 1336 3436 55 2 2 chr5 98487671 98488071 -54049188 + MTB LTR MaLR 1 400 0 6 1336 297 208 0 0 chr5 98488475 98488552 -54048707 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1336 676 294 6 0 chr5 98488557 98488720 -54048539 - RSINE1 SINE B4 0 165 2 6 1336 232 49 23 47 chr5 98488817 98488860 -54048399 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 6 1336 1193 69 0 0 chr5 98488861 98489005 -54048254 - B1_Mus1 SINE Alu -2 146 3 6 1336 625 192 0 0 chr5 98489209 98489313 -54047946 + RMER1B Other Other 803 906 -160 6 1336 232 125 0 0 chr5 98489313 98489345 -54047914 + RMER1B Other Other 874 905 -161 6 1336 244 118 0 0 chr5 98489345 98489379 -54047880 + RMER1B Other Other 873 906 -160 6 1336 232 147 0 0 chr5 98489411 98489445 -54047814 + RMER1B Other Other 873 906 -160 6 1336 281 61 0 0 chr5 98489468 98489501 -54047758 + RMER1B Other Other 874 906 -160 6 1336 228 121 0 0 chr5 98489501 98489534 -54047725 + RMER1B Other Other 874 906 -160 6 1336 247 94 0 0 chr5 98489588 98489620 -54047639 + RMER1B Other Other 874 905 -161 6 1336 255 91 0 0 chr5 98489621 98489654 -54047605 + RMER1B Other Other 874 906 -160 6 1336 252 118 0 0 chr5 98489657 98489691 -54047568 + RMER1B Other Other 873 906 -160 6 1336 264 88 0 0 chr5 98489694 98489728 -54047531 + RMER1B Other Other 873 906 -160 6 1336 240 121 0 0 chr5 98489782 98489815 -54047444 + RMER1B Other Other 874 906 -160 6 1336 226 147 0 0 chr5 98489837 98489871 -54047388 + RMER1B Other Other 873 906 -160 6 1336 233 121 0 0 chr5 98489892 98489925 -54047334 + RMER1B Other Other 874 906 -160 6 1336 294 203 0 30 chr5 98489928 98489994 -54047265 + RMER1A Other Other 794 857 -173 6 1336 252 59 0 0 chr5 98489995 98490029 -54047230 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 6 1336 1148 95 0 34 chr5 98490147 98490322 -54046937 - MTB LTR MaLR 0 400 232 6 1336 25 65 0 0 chr5 98490326 98490372 -54046887 + AT_rich Low_complexity Low_complexity 1 46 0 6 1336 1178 271 38 18 chr5 98490373 98490768 -54046491 + L1MA4 LINE L1 3492 3894 -2249 7 1336 603 290 50 7 chr5 98490771 98490910 -54046349 + B1F2 SINE Alu 3 147 -2 7 1336 219 139 0 0 chr5 98490910 98490946 -54046313 + (TAA)n Simple_repeat Simple_repeat 1 36 0 7 1336 694 259 65 39 chr5 98490956 98491265 -54045994 + L1MA4 LINE L1 3889 4205 -1938 7 1336 325 305 10 21 chr5 98491265 98491362 -54045897 + PB1D10 SINE Alu 1 96 -21 7 1336 234 0 0 0 chr5 98491365 98491391 -54045868 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1336 374 347 34 0 chr5 98491394 98491570 -54045689 + L1MA4 LINE L1 4188 4369 -1771 7 1336 1939 100 25 4 chr5 98491570 98491851 -54045408 + ORR1A2 LTR MaLR 1 287 -40 7 1336 7954 75 1 3 chr5 98491851 98493343 -54043916 + L1_Mus2 LINE L1 5080 6566 0 7 1336 425 86 0 0 chr5 98493343 98493401 -54043858 + ORR1A2 LTR MaLR 269 326 0 7 1336 192 40 0 0 chr5 98493434 98493459 -54043800 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1336 521 263 32 5 chr5 98493459 98493646 -54043613 + L1MA4 LINE L1 4419 4610 -1530 7 1336 486 259 87 58 chr5 98493645 98494011 -54043248 + L1MA4 LINE L1 5094 5472 -825 7 1336 378 0 0 0 chr5 98494038 98494080 -54043179 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1336 787 276 119 76 chr5 98494145 98494456 -54042803 + L1MA4 LINE L1 5460 5803 -497 7 1336 1145 143 25 36 chr5 98494456 98494652 -54042607 + B2_Mm2 SINE B2 2 195 0 7 1336 787 274 121 80 chr5 98494652 98494892 -54042367 + L1MA4 LINE L1 5804 6035 -265 7 1336 4450 20 2 0 chr5 98495507 98496011 -54041248 - L1Md_F3 LINE L1 -262 6320 5816 7 1336 1713 34 0 41 chr5 98496011 98496229 -54041030 + L1Md_F3 LINE L1 6365 6573 -11 7 1336 907 240 55 5 chr5 98496292 98496493 -54040766 + B3 SINE B2 1 211 -5 7 1336 329 299 26 0 chr5 98496778 98496855 -54040404 - PB1D10 SINE Alu -37 80 2 7 1336 911 177 0 18 chr5 98496940 98497107 -54040152 + B2_Mm2 SINE B2 1 164 -31 7 1336 515 78 13 0 chr5 98497107 98497184 -54040075 + (TAGA)n Simple_repeat Simple_repeat 4 81 0 7 1336 555 191 112 47 chr5 98498378 98498532 -54038727 - RMER20B LTR ERVK -357 159 1 7 1336 222 374 0 11 chr5 98498549 98498681 -54038578 + B1F1 SINE Alu 22 149 0 7 1336 3110 248 48 22 chr5 98498881 98499681 -54037578 + Lx8 LINE L1 6536 7355 -118 7 1336 2481 69 21 0 chr5 98499666 98500000 -54037259 + L1_Mus3 LINE L1 6205 6545 -93 7 1336 545 100 20 0 chr5 98500003 98500103 -54037156 + L1_Mus3 LINE L1 6530 6631 -7 1 1336 334 304 0 57 chr5 98500131 98500253 -54037006 + Lx8 LINE L1 7356 7470 -3 2 1336 1254 53 82 18 chr5 98500589 98500760 -54036499 - L1Md_F2 LINE L1 0 6582 6401 3 1336 519 17 0 0 chr5 98500760 98500820 -54036439 + L1_Mm LINE L1 1736 1795 -4088 4 1336 186 292 0 0 chr5 98501059 98501107 -54036152 + MIRc SINE MIR 177 224 -44 5 1336 193 320 20 0 chr5 98501143 98501193 -54036066 + MIRm SINE MIR 213 263 -13 6 1336 29 0 0 0 chr5 98501225 98501254 -54036005 + AT_rich Low_complexity Low_complexity 1 29 0 7 1336 286 311 54 0 chr5 98501493 98501567 -54035692 + ID4_ SINE ID 1 78 -5 8 1336 365 307 18 6 chr5 98502139 98502303 -54034956 + CT-rich Low_complexity Low_complexity 2 167 0 9 1336 288 268 11 23 chr5 98502468 98502556 -54034703 - HAL1 LINE L1 -2273 234 148 1 1336 448 246 70 63 chr5 98503098 98503213 -54034046 - MLT1A0 LTR MaLR -2 363 252 1 1336 4629 16 0 12 chr5 98503213 98503712 -54033547 + MT2_Mm LTR ERVL 1 493 0 1 1336 448 257 70 63 chr5 98503712 98503755 -54033504 - MLT1A0 LTR MaLR -114 294 220 1 1336 233 190 35 0 chr5 98503934 98503992 -54033267 + A-rich Low_complexity Low_complexity 2 61 0 1 1336 221 183 0 16 chr5 98504335 98504396 -54032863 + CT-rich Low_complexity Low_complexity 107 166 0 1 1336 202 234 0 21 chr5 98506916 98506964 -54030295 + GA-rich Low_complexity Low_complexity 1 47 0 1 1336 354 45 0 0 chr5 98509714 98509758 -54027501 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1336 213 82 20 39 chr5 98510131 98510182 -54027077 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1 1336 265 339 39 23 chr5 98510326 98510456 -54026803 + MLT1L LTR MaLR 344 475 -135 1 1336 2563 133 190 124 chr5 98510947 98511520 -54025739 - RMER19C LTR ERVK 0 611 1 1 1336 2742 60 9 0 chr5 98512016 98512352 -54024907 - L1Md_F2 LINE L1 0 6582 6244 2 1336 1061 256 48 11 chr5 98513146 98513178 -54024081 + B4A SINE B4 3 35 -257 2 1336 378 0 0 0 chr5 98513178 98513220 -54024039 + (CCA)n Simple_repeat Simple_repeat 3 44 0 2 1336 1061 256 48 11 chr5 98513220 98513460 -54023799 + B4A SINE B4 36 284 -8 2 1336 207 0 0 0 chr5 98513506 98513529 -54023730 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 1336 332 320 40 0 chr5 98513973 98514073 -54023186 - PB1D10 SINE Alu -11 106 3 2 1336 328 266 20 41 chr5 98514686 98514784 -54022475 - LTR16E1 LTR ERVL -19 519 424 2 1336 447 217 0 0 chr5 98515094 98515251 -54022008 + (CA)n Simple_repeat Simple_repeat 2 158 0 2 1336 416 311 68 36 chr5 98515495 98515745 -54021514 - L1MEg LINE L1 -5032 1052 795 2 1336 252 226 75 11 chr5 98515893 98515987 -54021272 - L1MEg LINE L1 -5511 573 474 2 1336 273 29 0 0 chr5 98516945 98516979 -54020280 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 2 1336 383 115 5 0 chr5 98516979 98517043 -54020216 - B1_Mus2 SINE Alu -1 146 54 2 1336 993 248 87 59 chr5 98517061 98517458 -54019801 + L1MC1 LINE L1 5520 5929 -404 3 1336 5043 79 11 5 chr5 98517458 98518110 -54019149 + L1_Mus3 LINE L1 5981 6636 -2 3 1336 23 0 0 0 chr5 98518139 98518162 -54019097 + AT_rich Low_complexity Low_complexity 1 23 0 3 1336 471 267 43 61 chr5 98518163 98518394 -54018865 + L1MC1 LINE L1 5911 6137 -207 3 1336 753 309 37 48 chr5 98518438 98518710 -54018549 + B4 SINE B4 1 269 -23 3 1336 342 0 0 0 chr5 98518710 98518748 -54018511 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1336 257 257 0 26 chr5 98518799 98518875 -54018384 + L1MC1 LINE L1 6240 6313 -20 3 1336 6197 98 40 6 chr5 98518944 98520667 -54016592 + L1Md_F2 LINE L1 274 2027 -3856 3 1336 16072 65 1 46 chr5 98520667 98522659 -54014600 + L1Md_F2 LINE L1 3467 5421 -462 3 1336 4918 55 82 0 chr5 98522659 98523279 -54013980 + L1Md_F2 LINE L1 5920 6582 0 3 1336 16072 65 1 46 chr5 98523279 98523503 -54013756 + L1Md_F2 LINE L1 5422 5585 -298 3 1336 7865 75 8 12 chr5 98523504 98524492 -54012767 + L1Md_F2 LINE L1 5587 6570 -12 3 1336 5345 73 0 3 chr5 98524486 98525145 -54012114 + L1Md_F2 LINE L1 5926 6582 0 3 1336 32 26 0 0 chr5 98525232 98525271 -54011988 + AT_rich Low_complexity Low_complexity 1 39 0 3 1336 3516 241 36 194 chr5 98525284 98525419 -54011840 - RMER1C Other Other 0 1342 1225 3 1336 243 0 0 0 chr5 98525419 98525446 -54011813 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 4 1336 3516 241 36 194 chr5 98525446 98526893 -54010366 - RMER1C Other Other -118 1224 10 3 1336 672 221 0 0 chr5 98527035 98527157 -54010102 - RMER1B Other Other -352 714 593 4 1336 209 331 53 107 chr5 98527266 98527435 -54009824 + L2c LINE L2 3227 3386 -1 4 1336 189 0 0 0 chr5 98527860 98527881 -54009378 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1336 1080 60 0 36 chr5 98529769 98529908 -54007351 + B1_Mus2 SINE Alu 1 134 -13 4 1336 281 47 23 0 chr5 98529908 98529951 -54007308 + (CAAAA)n Simple_repeat Simple_repeat 1 44 0 4 1336 22 0 0 0 chr5 98530011 98530033 -54007226 + AT_rich Low_complexity Low_complexity 1 22 0 4 1336 2186 47 8 0 chr5 98530505 98530760 -54006499 + L1Md_A LINE L1 6324 6580 -2 4 1336 344 365 9 9 chr5 98532330 98532446 -54004813 - B4A SINE B4 -153 139 24 4 1336 207 269 0 19 chr5 98532566 98532619 -54004640 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1336 587 280 108 70 chr5 98532885 98533412 -54003847 + L1ME2 LINE L1 5566 6112 -52 5 1336 243 0 0 0 chr5 98536579 98536606 -54000653 + (TA)n Simple_repeat Simple_repeat 2 28 0 5 1336 203 310 10 103 chr5 98536731 98536828 -54000431 - MIRb SINE MIR -138 130 43 5 1336 240 267 110 9 chr5 98537411 98537522 -53999737 + MLT1A1 LTR MaLR 4 126 -239 5 1336 876 241 36 16 chr5 98538033 98538227 -53999032 + RLTR18B LTR ERVK 5 202 -310 5 1336 1375 270 55 14 chr5 98538321 98538685 -53998574 + RLTR18B LTR ERVK 134 512 0 5 1336 398 255 63 14 chr5 98538685 98538809 -53998450 + MLT1A1 LTR MaLR 278 408 0 5 1336 1704 15 31 0 chr5 98538834 98539029 -53998230 - L1_Mus1 LINE L1 -741 5826 5626 5 1336 6335 55 5 0 chr5 98539029 98539768 -53997491 + L1_Mus1 LINE L1 5824 6566 -1 5 1336 400 348 40 20 chr5 98540306 98540555 -53996704 - CR1_Mam LINE CR1 -475 1729 1476 5 1336 180 0 0 0 chr5 98541060 98541080 -53996179 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5 1336 1201 287 6 65 chr5 98541404 98541758 -53995501 + MTE2a LTR MaLR 46 378 -1 5 1336 342 152 0 0 chr5 98542105 98542164 -53995095 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1336 390 79 40 0 chr5 98542621 98542697 -53994562 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1336 339 105 0 0 chr5 98542960 98543017 -53994242 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1336 333 0 0 0 chr5 98543017 98543053 -53994206 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1336 1035 65 29 6 chr5 98543053 98543223 -53994036 + (TG)n Simple_repeat Simple_repeat 1 175 0 6 1336 280 175 20 30 chr5 98543609 98543709 -53993550 + CT-rich Low_complexity Low_complexity 3 101 0 6 1336 249 314 106 19 chr5 98543943 98544047 -53993212 + PB1D10 SINE Alu 1 113 -4 6 1336 764 299 35 15 chr5 98544053 98544253 -53993006 + B4 SINE B4 84 287 -5 6 1336 338 319 21 16 chr5 98544471 98544659 -53992600 + L1VL1 LINE L1 85 273 -6149 6 1336 369 250 111 8 chr5 98544720 98544837 -53992422 + L1_Mus1 LINE L1 675 803 -5813 6 1336 32131 116 11 30 chr5 98544845 98548005 -53989254 + L1_Mus1 LINE L1 725 3828 -2055 6 1336 3470 39 23 0 chr5 98548005 98548392 -53988867 + MTA_Mm LTR MaLR 1 396 0 7 1336 32131 88 11 3 chr5 98548392 98551122 -53986137 + L1_Mus1 LINE L1 3829 6566 -1 6 1336 29 78 0 0 chr5 98551294 98551358 -53985901 + AT_rich Low_complexity Low_complexity 1 64 0 7 1336 532 287 98 9 chr5 98551393 98551573 -53985686 + B3A SINE B2 1 191 -4 7 1336 286 336 106 30 chr5 98551908 98552190 -53985069 - MLT1H1 LTR MaLR -16 544 238 7 1336 1282 41 7 0 chr5 98552594 98552741 -53984518 + B1_Mus1 SINE Alu 1 148 0 7 1336 239 0 32 0 chr5 98552741 98552772 -53984487 + (CAAAAA)n Simple_repeat Simple_repeat 6 37 0 7 1336 7256 59 25 10 chr5 98552773 98553699 -53983560 - L1_Mus1 LINE L1 -22 6545 5606 7 1336 1932 154 0 3 chr5 98553699 98554019 -53983240 - L1_Mur2 LINE L1 -2684 3193 2875 7 1336 759 182 16 0 chr5 98554450 98554571 -53982688 + B3 SINE B2 2 124 -92 7 1336 274 347 0 10 chr5 98554739 98554838 -53982421 + HERV16-int LTR ERVL 1660 1757 -3239 7 1336 430 361 50 36 chr5 98555433 98555654 -53981605 + LTR16C LTR ERVL 1 224 -265 8 1336 299 25 25 0 chr5 98555654 98555694 -53981565 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1336 729 240 191 4 chr5 98556555 98556806 -53980453 - RLTR11A2 LTR ERVK -229 298 1 8 1336 1986 185 26 23 chr5 98556808 98557235 -53980024 - MYSERV-int LTR ERVK -2 6548 6121 8 1336 282 301 0 0 chr5 98558107 98558180 -53979079 + MIRb SINE MIR 36 108 -160 8 1336 245 352 0 27 chr5 98558364 98558510 -53978749 + (CATA)n Simple_repeat Simple_repeat 2 143 0 8 1336 784 201 0 20 chr5 98559214 98559366 -53977893 + B1_Mur2 SINE Alu 1 149 0 8 1336 528 242 76 0 chr5 98559464 98559596 -53977663 + B3 SINE B2 1 142 -74 8 1336 594 79 0 0 chr5 98559606 98559695 -53977564 + (CA)n Simple_repeat Simple_repeat 2 90 0 8 1336 25 31 0 0 chr5 98559705 98559737 -53977522 + AT_rich Low_complexity Low_complexity 1 32 0 8 1336 306 65 0 42 chr5 98559770 98559818 -53977441 - B1F SINE Alu -1 148 103 8 1336 1930 244 7 54 chr5 98560190 98560636 -53976623 - Lx5 LINE L1 -12 7038 6614 9 1336 1138 272 80 19 chr5 98560672 98561036 -53976223 - RLTR18B LTR ERVK -6 506 121 9 1336 782 262 0 16 chr5 98561041 98561227 -53976032 - RLTR18B LTR ERVK -321 191 9 9 1336 244 286 86 43 chr5 98561968 98562085 -53975174 - Charlie9 DNA MER1_type -2635 122 1 9 1336 21 0 0 0 chr5 98562123 98562144 -53975115 + AT_rich Low_complexity Low_complexity 1 21 0 9 1336 3735 196 45 16 chr5 98562618 98563415 -53973844 - Lx9 LINE L1 -1 7643 6824 9 1336 376 303 92 61 chr5 98565259 98565586 -53971673 - LTR84a LTR ERVL -407 350 14 9 1336 448 155 175 0 chr5 98565852 98565955 -53971304 + B1_Mur4 SINE Alu 30 150 0 9 20 737 282 120 37 chr5 98566140 98566490 -53970769 + MTEa LTR MaLR 1 379 0 9 1337 785 127 0 7 chr5 98566840 98566975 -53970284 + (GGGA)n Simple_repeat Simple_repeat 2 135 0 9 1337 297 194 178 37 chr5 98567282 98567389 -53969870 - MIRb SINE MIR -47 221 100 1 1337 207 72 23 45 chr5 98568734 98568778 -53968481 + (TTG)n Simple_repeat Simple_repeat 2 44 0 1 1337 183 250 209 26 chr5 98569227 98569342 -53967917 - MIRc SINE MIR -23 245 110 1 1337 182 210 91 61 chr5 98569900 98569966 -53967293 - L3 LINE CR1 -777 3712 3645 1 1337 571 324 72 51 chr5 98570731 98571313 -53965946 - MLT1-int LTR MaLR -592 779 66 1 1337 589 286 96 11 chr5 98571313 98571500 -53965759 + LTR55 LTR ERV 1 203 -345 1 1337 274 322 173 7 chr5 98571932 98572204 -53965055 - L1M5 LINE L1 -288 5876 5560 1 1337 385 332 52 60 chr5 98572362 98572711 -53964548 - L1MC LINE L1 -902 5244 4899 1 1337 646 261 93 11 chr5 98572717 98572899 -53964360 + B3A SINE B2 2 198 0 1 1337 998 311 82 34 chr5 98573261 98574221 -53963038 - Lx8 LINE L1 -6 7467 6390 1 1337 2190 265 50 23 chr5 98574533 98575425 -53961834 - Lx8 LINE L1 -1223 6250 5282 1 1337 953 107 7 0 chr5 98575713 98575862 -53961397 + (TAGA)n Simple_repeat Simple_repeat 4 153 0 1 1337 210 352 0 0 chr5 98575865 98575936 -53961323 - ID4_ SINE ID -11 72 2 1 1337 1201 234 74 31 chr5 98575941 98576267 -53960992 - ORR1D2 LTR MaLR 0 370 31 1 1337 1121 265 72 46 chr5 98576304 98577135 -53960124 + L1M3 LINE L1 4930 5780 -532 1 1337 315 255 20 7 chr5 98577155 98577253 -53960006 + ID4_ SINE ID 12 107 -45 1 1337 239 343 49 0 chr5 98577272 98577374 -53959885 + L1M3 LINE L1 5781 5887 -302 1 1337 3869 280 94 21 chr5 98577575 98578886 -53958373 + Lx8 LINE L1 6067 7473 0 1 1337 419 261 104 7 chr5 98578923 98579058 -53958201 + B1_Mur1 SINE Alu 1 148 -1 1 1337 405 0 0 0 chr5 98579210 98579255 -53958004 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1337 489 62 0 0 chr5 98579255 98579320 -53957939 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1337 278 248 73 123 chr5 98579357 98579536 -53957723 + MTEb LTR MaLR 202 371 -8 1 1337 1007 315 113 51 chr5 98579544 98580189 -53957070 + MTEb-int LTR MaLR 1 685 -895 1 1337 387 318 113 53 chr5 98580462 98580764 -53956495 + MTEa LTR MaLR 55 374 -5 1 1337 278 278 119 25 chr5 98580897 98581133 -53956126 - L1MD LINE L1 -3752 2394 2137 1 1337 243 167 21 0 chr5 98581287 98581335 -53955924 - L1M4 LINE L1 -677 5507 5459 1 1337 886 295 96 42 chr5 98581455 98582006 -53955253 - L1M4 LINE L1 -1761 4385 3805 1 1337 311 295 0 0 chr5 98583683 98583761 -53953498 + ID4 SINE ID 2 79 -4 1 1337 215 297 95 0 chr5 98584006 98584080 -53953179 - B3 SINE B2 -54 162 82 1 1337 398 245 45 9 chr5 98584092 98584203 -53953056 - L1MA8 LINE L1 -19 6272 6158 1 1337 288 234 11 19 chr5 98584255 98584335 -53952924 - MTD LTR MaLR -259 162 86 1 1337 218 269 0 60 chr5 98584335 98584418 -53952841 + B3 SINE B2 2 79 -137 1 1337 1539 209 79 3 chr5 98584451 98584806 -53952453 - MTD LTR MaLR -18 401 20 1 1337 186 43 0 0 chr5 98584806 98584829 -53952430 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1337 535 271 72 0 chr5 98585074 98585240 -53952019 + RMER30 DNA MER1_type 8 185 -17 1 1337 339 192 0 0 chr5 98585357 98585430 -53951829 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1337 418 277 89 4 chr5 98585442 98585667 -53951592 - L1M4b LINE L1 -3700 3306 3063 1 1337 525 300 25 57 chr5 98585716 98585995 -53951264 - L1M4b LINE L1 -5873 1461 1192 1 1337 22 56 0 0 chr5 98587069 98587105 -53950154 + AT_rich Low_complexity Low_complexity 1 36 0 1 1337 359 21 0 20 chr5 98587369 98587418 -53949841 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 1 1337 4591 219 28 102 chr5 98587837 98589197 -53948062 + Lx3C LINE L1 5715 6974 -2 1 1337 186 67 67 0 chr5 98589225 98589270 -53947989 + (CAAA)n Simple_repeat Simple_repeat 3 50 0 1 1337 1439 109 30 9 chr5 98589372 98589603 -53947656 + L1_Mus4 LINE L1 6401 6636 0 1 1337 21 0 0 0 chr5 98589603 98589624 -53947635 + AT_rich Low_complexity Low_complexity 1 21 0 1 1337 361 355 104 50 chr5 98589724 98589868 -53947391 - L1M4b LINE L1 -6759 575 413 1 1337 432 0 0 0 chr5 98589868 98589916 -53947343 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1337 361 355 104 50 chr5 98589916 98590233 -53947026 - L1M4b LINE L1 -6922 412 90 1 1337 398 167 0 119 chr5 98590234 98590343 -53946916 - RMER20B LTR ERVK 0 627 532 1 1337 493 254 8 0 chr5 98590320 98590438 -53946821 - RMER20B LTR ERVK -507 120 2 1 1337 1140 249 28 14 chr5 98591139 98591424 -53945835 + MTE2b LTR MaLR 63 351 -28 1 1337 1004 44 7 21 chr5 98591449 98591589 -53945670 - B1_Mus2 SINE Alu -1 146 9 1 1337 464 204 37 123 chr5 98591589 98591610 -53945649 - B4 SINE B4 -67 224 78 1 1337 260 136 0 0 chr5 98591592 98591636 -53945623 + MTE2b LTR MaLR 335 378 -1 1 1337 253 316 92 25 chr5 98591761 98591881 -53945378 - MLT1A1 LTR MaLR -278 130 3 1 1337 425 19 19 0 chr5 98591997 98592051 -53945208 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1 1337 576 0 0 0 chr5 98592056 98592120 -53945139 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 1 1337 320 181 49 122 chr5 98592123 98592205 -53945054 - PB1D10 SINE Alu -21 96 21 1 1337 354 23 0 0 chr5 98592278 98592321 -53944938 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1337 192 97 0 0 chr5 98592324 98592355 -53944904 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1337 194 81 0 26 chr5 98592487 98592525 -53944734 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 1 1337 740 245 26 92 chr5 98592535 98592663 -53944596 + B3 SINE B2 2 134 -82 1 1337 5825 50 6 6 chr5 98592663 98593385 -53943874 - L1Md_F2 LINE L1 -12 6570 5849 1 1337 740 245 26 92 chr5 98593385 98593485 -53943774 + B3 SINE B2 135 215 -1 1 1337 2869 72 3 0 chr5 98593906 98594297 -53942962 - MTB LTR MaLR -8 392 1 1 1337 750 207 15 26 chr5 98596871 98597144 -53940115 + CT-rich Low_complexity Low_complexity 1 269 0 1 1337 207 100 0 0 chr5 98597351 98597381 -53939878 + (G)n Simple_repeat Simple_repeat 1 30 0 1 1337 348 24 0 0 chr5 98599949 98599990 -53937269 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1337 209 309 29 0 chr5 98600566 98600634 -53936625 - MIRc SINE MIR -143 125 56 1 1337 198 0 0 0 chr5 98602990 98603012 -53934247 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1 1337 1605 32 21 0 chr5 98603822 98604011 -53933248 + B2_Mm1a SINE B2 1 193 0 1 1337 202 245 20 0 chr5 98605062 98605111 -53932148 + CT-rich Low_complexity Low_complexity 3 52 0 1 1337 858 162 16 48 chr5 98605427 98605615 -53931644 + B2_Mm2 SINE B2 9 190 -5 1 1337 554 194 19 0 chr5 98605627 98605730 -53931529 + B1_Mus2 SINE Alu 31 135 -12 1 1337 325 188 30 45 chr5 98605798 98605865 -53931394 + B1_Mus1 SINE Alu 1 66 -82 1 1337 781 70 244 0 chr5 98607243 98607358 -53929901 + B1_Mus1 SINE Alu 1 143 -5 1 1337 291 54 0 0 chr5 98607361 98607398 -53929861 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1337 207 167 0 0 chr5 98607982 98608024 -53929235 + GA-rich Low_complexity Low_complexity 3 44 0 1 1337 291 28 0 0 chr5 98608361 98608397 -53928862 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1337 387 0 0 0 chr5 98609919 98609962 -53927297 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1337 299 186 86 0 chr5 98613024 98613094 -53924165 - Lx2 LINE L1 0 6997 6922 1 1337 468 0 0 0 chr5 98613975 98614027 -53923232 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1337 225 94 0 0 chr5 98614219 98614251 -53923008 + (CAG)n Simple_repeat Simple_repeat 2 33 0 1 1337 235 242 7 72 chr5 98614443 98614581 -53922678 + (CGG)n Simple_repeat Simple_repeat 2 130 0 1 1337 208 299 0 11 chr5 98614781 98614869 -53922390 + (CGG)n Simple_repeat Simple_repeat 2 88 0 1 1337 21 89 0 0 chr5 98615003 98615059 -53922200 + GC_rich Low_complexity Low_complexity 1 56 0 1 1337 198 71 0 0 chr5 98615350 98615378 -53921881 + (CGG)n Simple_repeat Simple_repeat 1 28 0 1 1337 480 117 0 0 chr5 98615840 98615917 -53921342 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1337 432 0 0 0 chr5 98617149 98617197 -53920062 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1337 207 204 0 0 chr5 98617197 98617241 -53920018 + CT-rich Low_complexity Low_complexity 2 45 0 1 1337 513 0 0 0 chr5 98619552 98619609 -53917650 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1337 1206 68 0 6 chr5 98620207 98620370 -53916889 - B2_Mm2 SINE B2 -33 162 1 1 1337 1232 34 0 0 chr5 98620394 98620540 -53916719 - B1_Mus2 SINE Alu 0 147 2 1 1337 1213 68 0 0 chr5 98622465 98622612 -53914647 - B1_Mus2 SINE Alu 0 147 1 1 1337 265 319 21 0 chr5 98622896 98622990 -53914269 - PB1D10 SINE Alu -10 107 12 1 1337 485 250 0 0 chr5 98623280 98623376 -53913883 - RSINE1 SINE B4 -67 98 3 1 1337 1035 199 0 66 chr5 98623824 98624050 -53913209 + B3 SINE B2 1 211 -5 1 1337 189 74 0 0 chr5 98624110 98624137 -53913122 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1337 833 137 59 0 chr5 98624141 98624303 -53912956 - B2_Mm2 SINE B2 -12 204 3 1 1337 253 325 49 15 chr5 98625041 98625158 -53912101 + MIRb SINE MIR 37 153 -123 1 1337 2157 240 51 101 chr5 98625515 98626358 -53910901 - Lx9 LINE L1 -15 7629 6829 1 1337 1425 79 11 0 chr5 98626462 98626652 -53910607 + B2_Mm2 SINE B2 1 192 -3 1 1337 580 306 56 39 chr5 98626657 98627017 -53910242 + MLT1B LTR MaLR 18 383 -7 1 1337 297 159 0 0 chr5 98628110 98628173 -53909086 + T-rich Low_complexity Low_complexity 1 63 0 1 1337 298 270 122 35 chr5 98628337 98628452 -53908807 + AmnSINE1 SINE SINE 282 406 -169 1 1337 504 221 254 12 chr5 98629225 98629394 -53907865 - B3 SINE B2 -6 210 1 1 1337 3081 80 8 2 chr5 98629469 98629871 -53907388 - MTB_Mm LTR MaLR 0 407 4 1 1337 699 12 0 0 chr5 98629871 98629951 -53907308 + (TC)n Simple_repeat Simple_repeat 1 80 0 1 1337 513 0 0 0 chr5 98630112 98630169 -53907090 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1337 234 0 0 0 chr5 98631090 98631116 -53906143 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1337 1227 42 0 0 chr5 98631273 98631417 -53905842 + B1_Mus2 SINE Alu 1 144 -3 2 1337 216 0 0 0 chr5 98631422 98631446 -53905813 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1337 220 244 69 14 chr5 98632855 98632954 -53904305 + B1F1 SINE Alu 11 111 -6 2 1337 437 241 24 0 chr5 98632971 98633141 -53904118 + GA-rich Low_complexity Low_complexity 2 175 0 2 1337 738 87 0 0 chr5 98633154 98633257 -53904002 + (GGAA)n Simple_repeat Simple_repeat 2 104 0 2 1337 227 179 0 0 chr5 98633372 98633411 -53903848 - ID2 SINE ID -40 43 5 2 1337 539 221 126 30 chr5 98633427 98633562 -53903697 + B1_Mur1 SINE Alu 2 149 0 2 1337 2125 122 41 41 chr5 98633739 98634106 -53903153 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1337 57611 18 7 10 chr5 98634106 98640594 -53896665 - IAPEz-int LTR ERVK 0 6481 8 2 1337 2125 122 41 41 chr5 98640594 98640961 -53896298 - IAPLTR1_Mm LTR ERVK 0 367 1 2 1337 180 77 0 0 chr5 98641611 98641637 -53895622 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2 1337 210 128 0 114 chr5 98642206 98642250 -53895009 + BC1_Mm scRNA scRNA 2 40 -112 2 1337 434 18 18 0 chr5 98642278 98642333 -53894926 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1337 499 252 122 0 chr5 98643043 98643174 -53894085 - B1_Mus2 SINE Alu 0 147 1 2 1337 318 299 98 39 chr5 98643196 98643349 -53893910 - L2 LINE L2 -583 2836 2675 2 1337 323 336 0 42 chr5 98644255 98644270 -53892989 + ID_B1 SINE B4 78 214 -10 2 1337 440 278 23 16 chr5 98644270 98644398 -53892861 + B1F1 SINE Alu 11 139 -10 2 1337 274 324 0 0 chr5 98644413 98644481 -53892778 + ID4 SINE ID 13 80 -3 2 1337 223 315 121 25 chr5 98644635 98644814 -53892445 + MIRb SINE MIR 34 241 -27 2 1337 387 0 0 0 chr5 98645547 98645590 -53891669 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1337 270 56 0 0 chr5 98645590 98645625 -53891634 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1337 1399 83 5 15 chr5 98645721 98645916 -53891343 - B2_Mm1a SINE B2 0 193 1 2 1337 340 254 145 29 chr5 98646175 98646313 -53890946 - MER45B DNA Tip100 -817 223 70 2 1337 1074 35 0 46 chr5 98646903 98647055 -53890204 + L1Md_F2 LINE L1 6438 6582 0 2 1337 941 139 0 0 chr5 98647068 98647205 -53890054 + B1_Mur3 SINE Alu 3 139 -10 2 1337 513 47 0 0 chr5 98647205 98647269 -53889990 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 2 1337 848 121 7 41 chr5 98647872 98648018 -53889241 + B1_Mur4 SINE Alu 10 150 0 2 1337 1235 115 28 0 chr5 98648325 98648507 -53888752 - B2_Mm2 SINE B2 -4 191 5 2 1337 984 97 24 12 chr5 98648536 98648703 -53888556 + (TATG)n Simple_repeat Simple_repeat 4 172 0 2 1337 259 156 0 22 chr5 98648706 98648752 -53888507 - RSINE1 SINE B4 -34 131 87 2 1337 2289 137 105 0 chr5 98648770 98649151 -53888108 + MTC LTR MaLR 1 421 0 2 1337 337 255 21 11 chr5 98649313 98649408 -53887851 - B1F SINE Alu -5 115 20 2 1337 359 266 97 0 chr5 98649443 98649556 -53887703 - ID_B1 SINE B4 -2 222 99 2 1337 315 295 132 0 chr5 98649556 98649572 -53887687 - B1F SINE Alu -2 147 2 2 1337 617 250 78 29 chr5 98651092 98651298 -53885961 + MER20 DNA MER1_type 1 216 -3 2 1337 217 163 66 15 chr5 98652130 98652267 -53884992 + (TA)n Simple_repeat Simple_repeat 1 144 0 2 1337 317 252 22 7 chr5 98652280 98652416 -53884843 + (TA)n Simple_repeat Simple_repeat 2 139 0 2 1337 237 295 53 18 chr5 98652993 98653107 -53884152 + L2 LINE L2 593 710 -2709 2 1337 2668 312 41 31 chr5 98653726 98654845 -53882414 - Lx8 LINE L1 -211 7262 6133 2 1337 357 24 0 0 chr5 98655023 98655065 -53882194 + (TCC)n Simple_repeat Simple_repeat 2 43 0 2 1337 366 386 0 0 chr5 98655317 98655444 -53881815 + B3A SINE B2 26 152 -46 2 1337 387 0 0 0 chr5 98655472 98655515 -53881744 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1337 1912 304 64 92 chr5 98655517 98656598 -53880661 + Lx8 LINE L1 6423 7473 0 2 1337 583 309 43 0 chr5 98656714 98656902 -53880357 - B3A SINE B2 -2 196 1 2 1337 3545 47 62 5 chr5 98657125 98657574 -53879685 + MT2C_Mm LTR ERVL 1 475 0 2 1337 304 331 165 41 chr5 98657575 98657745 -53879514 - B3 SINE B2 -24 192 2 2 1337 234 0 0 0 chr5 98660270 98660296 -53876963 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2 1337 1207 73 0 0 chr5 98660297 98660462 -53876797 - B2_Mm2 SINE B2 -30 165 1 2 1337 414 108 0 0 chr5 98660721 98660786 -53876473 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1337 786 132 0 24 chr5 98660786 98660901 -53876358 - B1_Mur2 SINE Alu -6 143 29 2 1337 624 278 10 10 chr5 98661011 98661211 -53876048 - B3 SINE B2 -7 209 10 2 1337 361 239 37 0 chr5 98661256 98661353 -53875906 - PB1D10 SINE Alu -2 115 16 2 1337 537 230 0 0 chr5 98661693 98661845 -53875414 + (TG)n Simple_repeat Simple_repeat 1 152 0 2 1337 25 0 0 0 chr5 98662098 98662123 -53875136 + AT_rich Low_complexity Low_complexity 1 25 0 2 1337 494 297 37 25 chr5 98662656 98662818 -53874441 + RSINE1 SINE B4 2 165 0 2 1337 242 310 0 0 chr5 98662819 98662877 -53874382 + (CACG)n Simple_repeat Simple_repeat 2 59 0 2 1337 458 367 6 19 chr5 98663141 98663302 -53873957 - B4A SINE B4 -123 169 11 2 1337 1210 220 134 33 chr5 98664117 98664483 -53872776 + RMER20B LTR ERVK 10 412 -215 2 1337 366 152 0 0 chr5 98664485 98664577 -53872682 + T-rich Low_complexity Low_complexity 2 93 0 2 1337 1035 85 43 0 chr5 98664578 98664719 -53872540 - B1_Mus1 SINE Alu -1 147 1 2 1337 399 234 150 14 chr5 98664721 98664868 -53872391 + RMER20B LTR ERVK 401 567 -60 2 1337 262 167 147 29 chr5 98664870 98664926 -53872333 + RMER20B LTR ERVK 528 582 -45 2 1337 195 42 0 0 chr5 98664926 98664950 -53872309 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2 1337 262 167 147 29 chr5 98664950 98664961 -53872298 + RMER20B LTR ERVK 583 601 -26 2 1337 216 309 66 102 chr5 98665190 98665356 -53871903 - L2 LINE L2 -528 2891 2732 2 1337 523 306 98 30 chr5 98665506 98665974 -53871285 + L1MB2 LINE L1 5617 6132 -39 2 1337 300 27 0 0 chr5 98665996 98666033 -53871226 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1337 1736 214 5 44 chr5 98666035 98666425 -53870834 + MTD LTR MaLR 31 405 -14 2 1337 802 156 12 0 chr5 98666987 98667160 -53870099 + CT-rich Low_complexity Low_complexity 1 175 0 2 1337 515 233 0 6 chr5 98667171 98667348 -53869911 + CT-rich Low_complexity Low_complexity 2 177 0 2 1337 324 340 0 27 chr5 98668601 98668713 -53868546 - PB1D7 SINE Alu -3 117 9 2 1337 216 303 45 0 chr5 98668659 98668725 -53868534 - ID_B1 SINE B4 -81 143 75 2 1337 955 289 103 23 chr5 98669151 98669541 -53867718 - Lx8 LINE L1 -5 7468 7048 2 1337 267 281 79 112 chr5 98670378 98670530 -53866729 - RSINE1 SINE B4 -15 150 4 2 1337 270 116 0 0 chr5 98670795 98670838 -53866421 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1337 227 319 42 11 chr5 98671416 98671511 -53865748 - MIRc SINE MIR -74 194 97 2 1337 309 51 0 0 chr5 98671629 98671668 -53865591 + (CACCAT)n Simple_repeat Simple_repeat 5 43 0 2 1337 4084 97 23 18 chr5 98671668 98672271 -53864988 - Lx3B LINE L1 0 6973 6368 2 1337 191 286 147 42 chr5 98674157 98674252 -53863007 + MIR SINE MIR 18 122 -140 2 1337 216 314 127 64 chr5 98674625 98674955 -53862304 - L2 LINE L2 -492 2927 2577 2 1337 261 0 0 0 chr5 98676171 98676200 -53861059 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1337 361 216 58 75 chr5 98676683 98676803 -53860456 - PB1 SINE Alu -7 120 3 2 1337 241 257 9 17 chr5 98676805 98676920 -53860339 + CT-rich Low_complexity Low_complexity 6 119 0 2 1337 693 0 0 0 chr5 98677328 98677405 -53859854 + (TTTCC)n Simple_repeat Simple_repeat 2 78 0 2 1337 1108 107 0 17 chr5 98677405 98677586 -53859673 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 2 1337 858 170 7 45 chr5 98677684 98677838 -53859421 + B1_Mur1 SINE Alu 1 148 -1 2 1337 297 239 31 42 chr5 98679159 98679255 -53858004 - MLT1A LTR MaLR -17 357 263 2 1337 272 301 83 70 chr5 98679267 98679424 -53857835 - MLT1A LTR MaLR -166 199 41 2 1337 342 0 0 0 chr5 98680403 98680441 -53856818 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1337 1136 71 90 45 chr5 98681601 98681779 -53855480 - B2_Mm2 SINE B2 -9 186 1 2 1337 383 38 19 0 chr5 98682482 98682535 -53854724 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1337 195 129 0 0 chr5 98683280 98683311 -53853948 + (TCTCCC)n Simple_repeat Simple_repeat 1 31 0 2 1337 22 0 0 0 chr5 98684062 98684084 -53853175 + AT_rich Low_complexity Low_complexity 1 22 0 2 1337 198 143 0 0 chr5 98684316 98684351 -53852908 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2 1337 189 74 0 0 chr5 98686078 98686105 -53851154 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 2 1337 387 0 0 0 chr5 98686412 98686455 -53850804 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1337 369 198 0 0 chr5 98688341 98688422 -53848837 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 1337 189 0 0 0 chr5 98688422 98688443 -53848816 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1337 200 59 29 0 chr5 98689615 98689649 -53847610 + (GTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1337 337 226 19 10 chr5 98694373 98694476 -53842783 - Lx7 LINE L1 -8 7688 7585 2 1337 216 97 0 0 chr5 98694481 98694512 -53842747 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 2 1337 3268 40 5 0 chr5 98696029 98696424 -53840835 + L1Md_F2 LINE L1 6186 6582 0 2 1338 236 213 0 0 chr5 98697768 98697815 -53839444 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 2 1338 233 132 0 0 chr5 98697832 98697870 -53839389 + tRNA-Met_ tRNA tRNA 1 38 -38 2 1338 24 0 0 0 chr5 98698109 98698133 -53839126 + AT_rich Low_complexity Low_complexity 1 24 0 2 1338 1139 301 142 48 chr5 98698152 98699073 -53838186 - L1_Mur3 LINE L1 -3 5877 4870 2 1338 282 263 194 39 chr5 98699510 98699613 -53837646 - B1F1 SINE Alu 0 120 2 2 1338 2034 204 166 82 chr5 98699857 98700104 -53837155 + Lx7 LINE L1 6906 7168 -528 2 1338 1379 73 5 30 chr5 98700104 98700302 -53836957 - B2_Mm1a SINE B2 0 193 1 3 1338 2034 204 166 82 chr5 98700302 98700784 -53836475 + Lx7 LINE L1 7169 7696 0 2 1338 815 164 26 52 chr5 98701766 98701920 -53835339 + B1_Mur4 SINE Alu 1 150 0 3 1338 425 172 45 11 chr5 98701978 98702066 -53835193 + B1_Mur1 SINE Alu 59 149 0 3 1338 288 0 0 0 chr5 98702287 98702319 -53834940 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1338 532 235 0 50 chr5 98702377 98702498 -53834761 + B1_Mur4 SINE Alu 2 116 -34 3 1338 540 164 33 49 chr5 98702498 98702620 -53834639 + B1_Mur3 SINE Alu 17 136 -13 3 1338 441 0 0 0 chr5 98704027 98704076 -53833183 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1338 22 0 0 0 chr5 98705189 98705211 -53832048 + AT_rich Low_complexity Low_complexity 1 22 0 3 1338 579 15 0 0 chr5 98705595 98705663 -53831596 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1338 978 64 0 21 chr5 98707321 98707465 -53829794 + B1_Mus1 SINE Alu 7 147 -1 3 1338 1120 119 108 15 chr5 98707820 98708024 -53829235 - URR1A DNA MER1_type 0 226 4 3 1338 4500 119 38 0 chr5 98708399 98709053 -53828206 - Lx4A LINE L1 0 7058 6380 3 1338 4368 171 37 16 chr5 98709540 98710376 -53826883 - Lx3C LINE L1 0 6976 6123 3 1338 273 271 40 67 chr5 98711743 98711893 -53825366 - RMER17C LTR ERVK -103 307 162 3 1338 180 0 0 0 chr5 98712622 98712642 -53824617 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1338 1532 58 5 5 chr5 98713805 98714013 -53823246 - MTB_Mm LTR MaLR -1 406 199 3 1338 241 333 43 25 chr5 98715065 98715228 -53822031 + L2 LINE L2 2497 2662 -757 3 1338 1174 55 0 0 chr5 98715724 98715870 -53821389 + B1_Mus2 SINE Alu 2 147 0 3 1338 252 314 99 33 chr5 98716352 98716454 -53820805 + Tigger9b DNA MER2_type 393 499 -125 3 1338 1602 57 0 0 chr5 98716454 98716647 -53820612 - B2_Mm1t SINE B2 0 193 1 3 1338 252 314 99 33 chr5 98716647 98716671 -53820588 + Tigger9b DNA MER2_type 500 533 -91 3 1338 1206 48 0 0 chr5 98716671 98716818 -53820441 - B1_Mm SINE Alu 0 147 1 3 1338 252 314 99 33 chr5 98716818 98716901 -53820358 + Tigger9b DNA MER2_type 534 616 -8 3 1338 1632 31 5 0 chr5 98716912 98717103 -53820156 + B2_Mm1t SINE B2 2 193 0 3 1338 25 31 0 0 chr5 98717540 98717572 -53819687 + AT_rich Low_complexity Low_complexity 1 32 0 3 1338 368 302 47 0 chr5 98717577 98717683 -53819576 - PB1D10 SINE Alu 0 117 7 3 1338 1515 295 79 8 chr5 98718757 98719287 -53817972 + Lx8 LINE L1 6904 7471 -2 3 1338 234 0 0 0 chr5 98720764 98720790 -53816469 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1338 269 68 0 22 chr5 98721199 98721244 -53816015 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1338 660 246 147 14 chr5 98722511 98722729 -53814530 - MIRb SINE MIR -19 249 3 3 1338 493 256 106 6 chr5 98723978 98724139 -53813120 + MER5A DNA MER1_type 7 183 -6 3 1338 445 287 43 14 chr5 98724189 98724327 -53812932 + RSINE1 SINE B4 3 144 -21 3 1338 265 165 24 60 chr5 98724372 98724456 -53812803 + (CA)n Simple_repeat Simple_repeat 1 81 0 3 1338 216 67 0 0 chr5 98724477 98724507 -53812752 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1338 21 0 0 0 chr5 98724709 98724730 -53812529 + AT_rich Low_complexity Low_complexity 1 21 0 3 1338 228 67 0 0 chr5 98724752 98724782 -53812477 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 3 1338 442 234 112 8 chr5 98724895 98725020 -53812239 - MER5A DNA MER1_type -6 183 46 3 1338 668 117 20 27 chr5 98725052 98725201 -53812058 + (TA)n Simple_repeat Simple_repeat 2 149 0 3 1338 960 130 17 23 chr5 98725735 98725908 -53811351 - B2_Mm2 SINE B2 -23 172 1 3 1338 202 176 0 73 chr5 98726364 98726419 -53810840 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 3 1338 207 100 0 0 chr5 98726600 98726630 -53810629 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1338 245 311 118 101 chr5 98727351 98727546 -53809713 + Charlie7 DNA MER1_type 2023 2203 -409 3 1338 216 0 0 0 chr5 98727546 98727570 -53809689 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1338 245 311 118 101 chr5 98727570 98727839 -53809420 + Charlie7 DNA MER1_type 2204 2495 -117 3 1338 492 72 0 0 chr5 98727943 98728012 -53809247 + (CA)n Simple_repeat Simple_repeat 2 70 0 3 1338 37 23 0 0 chr5 98728012 98728056 -53809203 + AT_rich Low_complexity Low_complexity 1 44 0 3 1338 853 175 60 53 chr5 98728065 98728330 -53808929 - RMER17C LTR ERVK -55 355 89 3 1338 1211 62 7 0 chr5 98728336 98728482 -53808777 + B1_Mm SINE Alu 1 147 0 3 1338 294 125 0 0 chr5 98728483 98728531 -53808728 + (A)n Simple_repeat Simple_repeat 1 48 0 3 1338 1039 285 79 77 chr5 98728787 98729319 -53807940 - MT2A LTR ERVL 0 533 1 3 1338 354 23 0 0 chr5 98729471 98729514 -53807745 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1338 1225 36 0 7 chr5 98729514 98729653 -53807606 - B1_Mm SINE Alu -8 139 2 3 1338 201 132 0 0 chr5 98729797 98729835 -53807424 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 1338 4995 167 29 29 chr5 98731191 98732099 -53805160 + RMER13B LTR ERVK 1 908 0 3 1338 249 282 0 0 chr5 98732108 98732186 -53805073 + Lx8 LINE L1 7396 7473 0 3 1338 403 286 71 20 chr5 98732602 98732798 -53804461 + L1ME2 LINE L1 4187 4392 -1754 3 1338 25 0 0 0 chr5 98733363 98733388 -53803871 + AT_rich Low_complexity Low_complexity 1 25 0 3 1338 299 241 11 44 chr5 98733511 98733602 -53803657 + CT-rich Low_complexity Low_complexity 3 90 0 3 1338 459 0 0 0 chr5 98733724 98733775 -53803484 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 3 1338 1246 49 0 0 chr5 98733775 98733918 -53803341 - B1_Mm SINE Alu -3 144 2 3 1338 490 312 108 12 chr5 98733956 98734575 -53802684 + L1ME2 LINE L1 5174 5855 -445 3 1338 624 203 8 45 chr5 98734618 98734752 -53802507 - B3 SINE B2 -86 130 2 3 1338 289 339 123 3 chr5 98734752 98735045 -53802214 + L1ME2 LINE L1 5845 6172 -6 3 1338 243 0 0 0 chr5 98735485 98735512 -53801747 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1338 471 18 0 0 chr5 98736092 98736148 -53801111 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 3 1338 233 167 15 0 chr5 98736217 98736246 -53801013 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 1338 1197 75 0 13 chr5 98736246 98736395 -53800864 - B1_Mus1 SINE Alu 0 148 2 3 1338 233 167 15 0 chr5 98736395 98736431 -53800828 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 3 1338 477 191 2 190 chr5 98737198 98737351 -53799908 - B1F1 SINE Alu -22 127 1 3 1338 251 326 0 0 chr5 98737372 98737458 -53799801 + (TATG)n Simple_repeat Simple_repeat 3 88 0 3 1338 848 110 260 0 chr5 98737478 98737632 -53799627 - B2_Mm2 SINE B2 -1 194 1 3 1338 1235 62 0 0 chr5 98737764 98737910 -53799349 + B1_Mus2 SINE Alu 2 147 0 3 1338 228 111 0 0 chr5 98737911 98737947 -53799312 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1338 1669 47 0 16 chr5 98738072 98738266 -53798993 - B2_Mm1a SINE B2 -1 192 2 3 1338 3279 116 3 100 chr5 98739920 98740323 -53796936 + L1_Mur1 LINE L1 4089 4438 -1448 3 1338 1115 122 0 0 chr5 98740323 98740470 -53796789 - B1_Mus1 SINE Alu 0 148 2 3 1338 3279 116 3 100 chr5 98740470 98740677 -53796582 + L1_Mur1 LINE L1 4439 4640 -1246 3 1338 222 37 0 0 chr5 98740942 98740969 -53796290 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1338 909 257 22 5 chr5 98741135 98741358 -53795901 + B4A SINE B4 5 231 -61 3 1338 1311 213 106 0 chr5 98741365 98741666 -53795593 + ORR1D1 LTR MaLR 42 374 0 3 1338 2277 130 0 6 chr5 98742496 98742836 -53794423 - ORR1A1 LTR MaLR -8 338 1 3 1338 8791 167 78 38 chr5 98742836 98744093 -53793166 - ORR1A1-int LTR MaLR 0 1792 466 3 1338 1663 37 5 0 chr5 98744093 98744282 -53792977 - B2_Mm1t SINE B2 -2 191 2 3 1338 8791 167 78 38 chr5 98744282 98744746 -53792513 - ORR1A1-int LTR MaLR -1327 465 1 3 1338 2038 131 16 0 chr5 98744750 98745064 -53792195 - ORR1A1 LTR MaLR -8 319 1 3 1338 529 258 113 69 chr5 98745337 98745541 -53791718 - B3 SINE B2 -3 213 1 3 1338 779 182 7 40 chr5 98747058 98747196 -53790063 + B1_Mur2 SINE Alu 1 136 -13 3 1338 378 0 0 0 chr5 98747196 98747238 -53790021 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 3 1338 2904 71 5 5 chr5 98747461 98747857 -53789402 + MTA_Mm LTR MaLR 1 396 0 3 1338 4382 85 3 5 chr5 98747857 98748460 -53788799 - MTB-int LTR MaLR -496 602 1 3 1338 3004 70 41 15 chr5 98748460 98748850 -53788409 - MTB LTR MaLR 0 400 1 3 1338 715 243 66 0 chr5 98750328 98750480 -53786779 + B3A SINE B2 1 162 -36 3 1338 312 27 0 0 chr5 98750492 98750529 -53786730 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1338 1267 85 6 6 chr5 98751377 98751555 -53785704 - MTA_Mm LTR MaLR -218 178 1 3 1338 983 212 57 5 chr5 98752179 98752373 -53784886 - B3 SINE B2 -12 204 1 3 1338 42 36 0 0 chr5 98752413 98752469 -53784790 + AT_rich Low_complexity Low_complexity 1 56 0 3 1338 493 211 405 6 chr5 98752595 98752760 -53784499 - RMER1C Other Other -13 1329 1099 3 1338 2780 67 0 0 chr5 98752869 98753196 -53784063 + ORR1A2 LTR MaLR 1 327 0 3 1338 966 231 18 41 chr5 98753651 98753872 -53783387 - B3 SINE B2 0 216 1 3 1338 2612 260 32 24 chr5 98753872 98754065 -53783194 + Lx9 LINE L1 6614 6816 -828 3 1338 3269 80 2 0 chr5 98754065 98754464 -53782795 - MTB LTR MaLR 0 400 1 3 1338 2612 260 32 24 chr5 98754464 98754990 -53782269 + Lx9 LINE L1 6817 7339 -305 3 1338 522 0 0 0 chr5 98755274 98755332 -53781927 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 1338 273 328 64 21 chr5 98756936 98757076 -53780183 + MIRb SINE MIR 95 240 -28 3 1338 391 254 176 8 chr5 98759144 98759275 -53777984 - RSINE1 SINE B4 -8 157 5 3 1338 411 191 15 0 chr5 98760026 98760094 -53777165 + ID4_ SINE ID 2 70 -13 3 1338 420 20 0 0 chr5 98760095 98760144 -53777115 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1338 1584 201 84 77 chr5 98760148 98760474 -53776785 - RLTR20A LTR ERVK -97 444 117 3 1338 1224 55 0 14 chr5 98760474 98760622 -53776637 - B1_Mm SINE Alu -1 146 1 3 1338 1584 201 84 77 chr5 98760622 98760736 -53776523 - RLTR20A LTR ERVK -425 116 2 3 1338 3248 54 0 10 chr5 98760736 98761147 -53776112 - L1Md_F2 LINE L1 -521 5362 4956 3 1338 1965 31 0 0 chr5 98761146 98761370 -53775889 + L1Md_F2 LINE L1 5362 5585 -298 3 1338 8956 36 0 1 chr5 98761371 98762367 -53774892 + L1Md_F2 LINE L1 5587 6581 -1 3 1338 1039 249 147 42 chr5 98762399 98762540 -53774719 - Lx7 LINE L1 -1688 6008 5860 3 1338 471 113 0 0 chr5 98762540 98762611 -53774648 + (TA)n Simple_repeat Simple_repeat 2 72 0 4 1338 12376 220 76 80 chr5 98762611 98763679 -53773580 - Lx7 LINE L1 -24 5856 4750 3 1338 1351 20 0 0 chr5 98763679 98763826 -53773433 - B1_Mus2 SINE Alu 0 147 1 4 1338 12376 220 76 80 chr5 98763826 98763840 -53773419 - Lx7 LINE L1 -1131 4749 4749 3 1338 4556 28 0 0 chr5 98763840 98764334 -53772925 - L1Md_T LINE L1 0 6582 6089 4 1338 12376 220 76 80 chr5 98764334 98764686 -53772573 - Lx7 LINE L1 -1131 4749 4536 3 1338 267 31 0 0 chr5 98764686 98764718 -53772541 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 4 1338 12376 220 76 80 chr5 98764718 98766175 -53771084 - Lx7 LINE L1 -1345 4535 3065 3 1338 1194 51 0 0 chr5 98766175 98766313 -53770946 - B1_Mus1 SINE Alu -9 139 2 4 1338 12376 220 76 80 chr5 98766313 98766335 -53770924 - Lx7 LINE L1 -2816 3064 3051 3 1338 1265 164 17 68 chr5 98766335 98766570 -53770689 - URR1B DNA MER1_type -2 223 1 4 1338 12376 220 76 80 chr5 98766570 98767767 -53769492 - Lx7 LINE L1 -2830 3050 1761 3 1338 1571 293 63 29 chr5 98767761 98768351 -53768908 + Lx7 LINE L1 6749 7358 -338 4 1338 479 60 15 0 chr5 98768377 98768444 -53768815 + (GA)n Simple_repeat Simple_repeat 1 68 0 4 1338 1917 232 30 65 chr5 98768684 98769588 -53767671 - Lx7 LINE L1 -4113 1767 896 3 1338 1847 282 126 17 chr5 98769716 98770423 -53766836 + Lx8 LINE L1 6374 7157 -316 4 1338 189 0 0 0 chr5 98770588 98770609 -53766650 + (CAA)n Simple_repeat Simple_repeat 2 22 0 4 1338 1440 87 27 0 chr5 98770916 98771100 -53766159 + B2_Mm2 SINE B2 1 189 -6 4 1338 327 282 79 23 chr5 98771280 98771302 -53765957 + L1MEc LINE L1 1299 1322 -5078 4 1338 924 180 49 27 chr5 98771302 98771485 -53765774 - B2_Mm2 SINE B2 -7 188 2 4 1338 327 282 79 23 chr5 98771485 98771676 -53765583 + L1MEc LINE L1 1323 1524 -4876 4 1338 4350 54 12 2 chr5 98772273 98772778 -53764481 + L1_Mus1 LINE L1 6041 6550 -17 4 1338 838 234 87 49 chr5 98772778 98773124 -53764135 + RLTR10D LTR ERVK 1 359 0 4 1338 32 26 0 0 chr5 98773129 98773168 -53764091 + AT_rich Low_complexity Low_complexity 1 39 0 4 1338 23 0 0 0 chr5 98774242 98774265 -53762994 + AT_rich Low_complexity Low_complexity 1 23 0 4 1338 44 20 0 0 chr5 98774315 98774366 -53762893 + AT_rich Low_complexity Low_complexity 1 51 0 4 1338 1496 80 16 5 chr5 98774420 98774609 -53762650 - B2_Mm2 SINE B2 -4 191 1 4 1338 591 311 19 142 chr5 98775849 98776063 -53761196 + B4 SINE B4 1 183 -109 4 1338 1034 98 0 28 chr5 98776063 98776242 -53761017 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 4 1338 1244 55 7 0 chr5 98776243 98776389 -53760870 - B1_Mus2 SINE Alu 0 147 1 4 1338 591 311 19 142 chr5 98776389 98776490 -53760769 + B4 SINE B4 184 279 -13 4 1338 360 371 81 20 chr5 98776888 98777086 -53760173 - MLT1E3 LTR MaLR -125 499 290 4 1338 322 256 11 44 chr5 98777105 98777195 -53760064 - MLT1E3 LTR MaLR -416 211 125 4 1338 552 129 6 24 chr5 98777165 98777300 -53759959 - B1_Mus2 SINE Alu -18 131 1 4 1338 209 308 39 19 chr5 98778181 98778284 -53758975 - L2c LINE L2 -14 3361 3253 4 1338 732 297 73 44 chr5 98778295 98778612 -53758647 + L1MB5 LINE L1 5531 5856 -318 4 1338 446 279 8 5 chr5 98778679 98778828 -53758431 + ORR1D2 LTR MaLR 25 171 -207 4 1338 396 88 0 0 chr5 98778833 98778890 -53758369 + (TTA)n Simple_repeat Simple_repeat 3 59 0 4 1338 240 327 9 106 chr5 98778938 98779051 -53758208 + B1F1 SINE Alu 2 103 -46 4 1338 479 301 73 0 chr5 98779071 98779207 -53758052 + RSINE1 SINE B4 3 148 -17 4 1338 763 211 172 0 chr5 98779424 98779628 -53757631 + ORR1D2 LTR MaLR 132 370 0 4 1338 385 256 47 7 chr5 98779628 98779776 -53757483 + L1MB5 LINE L1 5899 6051 -127 4 1338 913 211 115 5 chr5 98779864 98780055 -53757204 - B3 SINE B2 -3 213 2 4 1338 722 293 134 37 chr5 98780092 98780780 -53756479 + Lx8 LINE L1 5541 6337 -1136 4 1338 223 237 0 0 chr5 98780797 98780835 -53756424 - PB1 SINE Alu -9 118 81 4 1338 2397 189 71 43 chr5 98780842 98781352 -53755907 - RLTR11A LTR ERVK -4 524 1 4 1338 225 94 0 0 chr5 98781420 98781452 -53755807 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1338 248 284 32 87 chr5 98781453 98781473 -53755786 - B2_Mm2 SINE B2 -19 176 2 4 1338 505 285 30 42 chr5 98781473 98781638 -53755621 - RSINE1 SINE B4 0 165 3 4 1338 229 324 152 28 chr5 98781915 98782093 -53755166 - MIR SINE MIR -55 207 8 4 1338 852 164 43 0 chr5 98783216 98783356 -53753903 + B1_Mur4 SINE Alu 3 148 -2 4 1338 1716 271 64 116 chr5 98783826 98784736 -53752523 - L1_Mur3 LINE L1 -234 5646 4779 4 1338 509 55 32 53 chr5 98784736 98784831 -53752428 - L1Md_F3 LINE L1 0 6584 6492 4 1338 1716 271 64 116 chr5 98784831 98784982 -53752277 - L1_Mur3 LINE L1 -1102 4778 4640 4 1338 197 219 14 0 chr5 98784992 98785065 -53752194 + (TG)n Simple_repeat Simple_repeat 2 75 0 4 1338 1998 97 94 63 chr5 98785131 98785450 -53751809 - ORR1A4 LTR MaLR 0 329 1 4 1338 4219 178 72 46 chr5 98785450 98786940 -53750319 - ORR1A4-int LTR MaLR 0 1792 1 4 1338 2145 123 40 40 chr5 98786940 98787269 -53749990 - ORR1A4 LTR MaLR 0 329 1 4 1338 725 243 104 99 chr5 98787269 98787662 -53749597 - L1_Mur3 LINE L1 -1315 4565 4171 4 1338 1166 96 0 14 chr5 98789443 98789591 -53747668 + B1_Mus2 SINE Alu 2 147 0 4 1338 203 154 0 133 chr5 98789591 98789666 -53747593 + A-rich Low_complexity Low_complexity 1 65 0 4 1338 985 328 46 23 chr5 98789888 98790383 -53746876 + L3b LINE CR1 3981 4498 -10 4 1338 233 316 37 23 chr5 98790681 98790804 -53746455 - MIRm SINE MIR -97 171 42 4 1338 531 107 0 0 chr5 98790829 98790913 -53746346 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1338 266 317 55 11 chr5 98790917 98791052 -53746207 - Lx9 LINE L1 -175 7469 7202 4 1338 2128 311 53 14 chr5 98791054 98791842 -53745417 - Lx9 LINE L1 -364 7280 6462 4 1338 591 292 67 150 chr5 98792432 98792746 -53744513 - B4 SINE B4 -1 291 4 4 1338 1479 84 5 5 chr5 98792769 98792960 -53744299 - B2_Mm2 SINE B2 -4 191 1 4 1338 256 335 82 24 chr5 98793092 98793334 -53743925 - MIR SINE MIR -14 254 2 4 1338 1241 275 90 74 chr5 98795453 98796018 -53741241 + Lx7 LINE L1 6794 7367 -329 4 1338 1011 48 28 0 chr5 98796840 98796985 -53740274 + (TTCTCC)n Simple_repeat Simple_repeat 3 151 0 4 1338 488 16 16 0 chr5 98797501 98797562 -53739697 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1338 21 57 0 0 chr5 98798406 98798441 -53738818 + AT_rich Low_complexity Low_complexity 1 35 0 4 1338 274 296 143 0 chr5 98798441 98798539 -53738720 - PB1D7 SINE Alu 0 120 9 4 1338 879 261 46 0 chr5 98798900 98799095 -53738164 - B3 SINE B2 -12 204 1 4 1338 554 180 215 42 chr5 98799894 98800085 -53737174 - Lx9 LINE L1 -9 7635 7412 4 1338 240 351 74 19 chr5 98800186 98800307 -53736952 + FordPrefect_a DNA Tip100 310 436 -72 4 1338 13882 107 48 16 chr5 98800419 98803522 -53733737 - MusHAL1 LINE L1 -146 3207 1 4 1338 2033 149 62 0 chr5 98806340 98806398 -53730861 - MTC LTR MaLR -44 377 315 4 1338 549 0 0 0 chr5 98806398 98806459 -53730800 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 4 1338 2033 149 62 0 chr5 98806459 98806755 -53730504 - MTC LTR MaLR -107 314 3 4 1338 414 267 75 100 chr5 98806765 98807044 -53730215 - L1MDa LINE L1 -4218 2415 2144 4 1338 198 0 0 0 chr5 98807611 98807633 -53729626 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1338 1298 48 0 0 chr5 98807633 98807780 -53729479 - B1_Mus1 SINE Alu 0 148 2 4 1338 2537 71 12 9 chr5 98808485 98808811 -53728448 + ORR1A2 LTR MaLR 1 327 0 4 1338 2425 68 3 10 chr5 98809766 98810078 -53727181 - L1Md_F2 LINE L1 -13 6569 6260 4 1338 300 244 47 47 chr5 98811820 98811949 -53725310 + L2a LINE L2 3226 3354 -72 4 1338 280 326 7 35 chr5 98812024 98812167 -53725092 + CT-rich Low_complexity Low_complexity 6 144 0 4 1338 252 298 154 14 chr5 98812506 98812649 -53724610 + L2a LINE L2 3264 3426 0 4 1338 242 29 29 0 chr5 98812787 98812822 -53724437 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 4 1338 1279 35 0 0 chr5 98812824 98812966 -53724293 - B1_Mus1 SINE Alu -5 143 2 4 1338 579 285 74 81 chr5 98813165 98813448 -53723811 + B4A SINE B4 2 282 -10 4 1338 471 272 38 19 chr5 98814480 98814585 -53722674 + B1F2 SINE Alu 5 111 -38 4 1338 4163 40 0 0 chr5 98815262 98815733 -53721526 - L1Md_F2 LINE L1 -3 6579 6109 4 1338 1752 339 74 89 chr5 98815754 98817079 -53720180 + MLT1J-int LTR MaLR 11 1315 -72 4 1338 896 149 28 14 chr5 98817541 98817684 -53719575 - B1_Mur3 SINE Alu -3 146 2 4 1338 3457 220 99 36 chr5 98817765 98818707 -53718552 - RMER1B Other Other -9 1057 57 4 1338 11156 106 46 1 chr5 98819264 98821553 -53715706 + L1_Mus3 LINE L1 4239 6630 -8 4 1338 292 321 0 0 chr5 98821555 98821639 -53715620 - LTR40b LTR ERVL -4 458 375 4 1338 219 283 0 0 chr5 98821794 98821893 -53715366 + (TG)n Simple_repeat Simple_repeat 2 100 0 4 1338 572 254 7 28 chr5 98821938 98822080 -53715179 - B4A SINE B4 0 292 154 4 1338 207 0 0 0 chr5 98822361 98822384 -53714875 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 4 1338 1914 78 8 8 chr5 98822835 98823081 -53714178 - L1_Mus1 LINE L1 0 6567 6322 4 1338 357 250 30 30 chr5 98823477 98823609 -53713650 - RLTR23 LTR ERV1 0 430 299 4 1338 3148 144 133 59 chr5 98823890 98824515 -53712744 - RLTR19-int LTR ERVK -4931 1206 527 4 1338 378 0 0 0 chr5 98824515 98824557 -53712702 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1338 3148 144 133 59 chr5 98824557 98824644 -53712615 - RLTR19-int LTR ERVK -5611 526 441 4 1338 198 0 0 0 chr5 98824796 98824818 -53712441 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1338 518 79 13 0 chr5 98824836 98824912 -53712347 + (TTC)n Simple_repeat Simple_repeat 2 78 0 4 1338 1279 61 0 0 chr5 98824914 98825062 -53712197 - B1_Mus1 SINE Alu 0 148 1 4 1338 585 310 14 0 chr5 98825675 98825817 -53711442 + RSINE1 SINE B4 3 146 -19 4 1338 348 24 0 0 chr5 98825836 98825877 -53711382 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 4 1338 8335 74 24 12 chr5 98825962 98827057 -53710202 + Lx3_Mus LINE L1 5902 7009 0 4 167 518 281 29 96 chr5 98828131 98828349 -53708910 - B3A SINE B2 -13 203 10 4 1339 4733 47 0 3 chr5 98828467 98829050 -53708209 - Lx6 LINE L1 -1774 5686 5108 4 1339 2913 32 20 9 chr5 98829050 98829395 -53707864 + L1Md_F3 LINE L1 6234 6582 -2 4 1339 438 176 0 0 chr5 98829487 98829572 -53707687 + CT-rich Low_complexity Low_complexity 3 87 0 4 1339 330 308 79 25 chr5 98829752 98829955 -53707304 + LTR86B2 LTR ERVL 269 482 -5 4 1339 21 0 0 0 chr5 98830364 98830385 -53706874 + AT_rich Low_complexity Low_complexity 1 21 0 5 1339 326 365 32 0 chr5 98832044 98832182 -53705077 - B4 SINE B4 -142 150 1 5 1339 350 164 76 9 chr5 98832219 98832324 -53704935 - Lx9 LINE L1 -6 7638 7527 5 1339 331 329 0 0 chr5 98832384 98832463 -53704796 + ID4_ SINE ID 4 82 -1 5 1339 2840 192 11 4 chr5 98832782 98833311 -53703948 + Lx4A LINE L1 5907 6439 -619 5 1339 2431 133 36 49 chr5 98833508 98833958 -53703301 + RLTR31A_Mm LTR ERVK 1 444 -140 5 1339 713 223 59 45 chr5 98834128 98834349 -53702910 + RMER3D-int LTR ERVK 149 372 -2470 5 1339 1968 116 24 0 chr5 98834429 98834723 -53702536 - L1_Mur1 LINE L1 -295 5591 5291 5 1339 1147 68 0 0 chr5 98834731 98834878 -53702381 - B1_Mus2 SINE Alu 0 147 1 5 1339 820 118 147 3 chr5 98834878 98835039 -53702220 - L1_Mur1 LINE L1 -580 5297 5081 5 1339 215 271 83 25 chr5 98835386 98835507 -53701752 - L2 LINE L2 -982 2437 2310 5 1339 435 68 0 0 chr5 98836268 98836327 -53700932 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1339 872 291 45 11 chr5 98836686 98836954 -53700305 - RMER15 LTR ERVL -5 570 294 5 1339 1499 287 87 52 chr5 98836955 98837649 -53699610 + Lx8 LINE L1 6753 7470 -3 5 1339 404 306 183 19 chr5 98837757 98838010 -53699249 - MLT1B LTR MaLR -18 372 78 5 1339 492 18 0 0 chr5 98838308 98838365 -53698894 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1339 2743 152 2 21 chr5 98838626 98839097 -53698162 + L1_Mur1 LINE L1 5151 5612 -274 5 1339 369 0 0 0 chr5 98839465 98839506 -53697753 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1339 335 271 45 90 chr5 98840106 98840200 -53697059 + B3A SINE B2 55 149 -49 5 1339 444 19 0 0 chr5 98840200 98840253 -53697006 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1339 335 271 45 90 chr5 98840253 98840292 -53696967 + B3A SINE B2 150 182 -16 5 1339 249 303 0 0 chr5 98840294 98840370 -53696889 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1339 1397 97 0 16 chr5 98840388 98840576 -53696683 - B2_Mm2 SINE B2 -9 186 2 5 1339 2526 138 98 18 chr5 98840899 98841348 -53695911 + RLTR11A2 LTR ERVK 1 485 -42 5 1339 6163 125 39 23 chr5 98841521 98842464 -53694795 + RMER17B LTR ERVK 1 958 0 5 1339 1599 132 41 4 chr5 98842763 98843029 -53694230 + RMER6C LTR ERVK 415 690 0 5 1339 1272 47 0 20 chr5 98844877 98845028 -53692231 - B1_Mus1 SINE Alu 0 148 1 5 1339 403 247 0 0 chr5 98846496 98846577 -53690682 + B3A SINE B2 17 97 -101 5 1339 347 301 0 0 chr5 98846576 98846669 -53690590 - B3 SINE B2 -83 133 41 5 1339 256 223 5 38 chr5 98847254 98847312 -53689947 - B1_Mus2 SINE Alu -23 126 66 5 1339 1796 219 72 111 chr5 98847323 98847938 -53689321 - Lx7 LINE L1 -1418 6278 5688 5 1339 400 203 250 0 chr5 98847938 98847981 -53689278 - MT2B LTR ERVL 0 601 545 5 1339 534 103 0 0 chr5 98847981 98848059 -53689200 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 5 1339 400 203 250 0 chr5 98848059 98848143 -53689116 - MT2B LTR ERVL -57 544 443 5 1339 955 214 74 1 chr5 98848145 98848366 -53688893 - Lx7 LINE L1 -473 5716 5445 5 1339 21788 93 6 4 chr5 98848372 98852196 -53685063 - L1_Mus1 LINE L1 0 6567 2738 5 1339 250 186 32 63 chr5 98852229 98852292 -53684967 - L1_Mus1 LINE L1 -5887 729 669 5 1339 696 279 27 46 chr5 98852342 98852767 -53684492 - L1VL1 LINE L1 -6035 387 45 5 1339 1234 162 12 29 chr5 98852766 98853008 -53684251 - Lx7 LINE L1 -419 5461 5224 5 1339 245 268 161 25 chr5 98853010 98853209 -53684050 - Charlie2b DNA MER1_type -317 2465 2240 5 1339 3169 272 58 33 chr5 98853251 98854216 -53683043 - RMER1C Other Other 0 1342 209 5 1339 355 303 24 24 chr5 98855134 98855247 -53682012 + MER103 DNA DNA 1 113 -53 5 1339 378 220 76 117 chr5 98855247 98855512 -53681747 + B4A SINE B4 3 272 -20 5 1339 210 156 47 0 chr5 98855604 98855668 -53681591 + GA-rich Low_complexity Low_complexity 3 69 0 5 1339 1373 254 99 10 chr5 98855860 98856245 -53681014 + MTD LTR MaLR 1 419 0 5 1339 694 276 119 37 chr5 98857040 98857334 -53679925 - MER57F LTR ERV1 -16 420 103 5 1339 477 290 121 8 chr5 98857380 98857512 -53679747 + B1_Mur1 SINE Alu 2 148 -1 5 1339 1253 54 0 20 chr5 98857855 98858005 -53679254 - B1_Mus2 SINE Alu 0 147 1 5 1339 333 118 0 0 chr5 98858163 98858214 -53679045 + (CCTA)n Simple_repeat Simple_repeat 1 51 0 5 1339 227 333 36 58 chr5 98858428 98858565 -53678694 - MIR3 SINE MIR -17 191 58 5 1339 1965 168 76 3 chr5 98860572 98860913 -53676346 - ORR1B2 LTR MaLR -1 366 1 5 1339 244 281 171 19 chr5 98861138 98861243 -53676016 - PB1D10 SINE Alu -28 121 1 5 1339 328 261 83 16 chr5 98861364 98861485 -53675774 + ORR1E LTR MaLR 9 137 -222 5 1339 1657 37 0 40 chr5 98863816 98864015 -53673244 - B2_Mm1t SINE B2 -2 191 1 5 1339 312 161 0 0 chr5 98864229 98864291 -53672968 + C-rich Low_complexity Low_complexity 5 66 0 5 1339 387 313 29 15 chr5 98864959 98865095 -53672164 + ID_B1 SINE B4 83 220 -4 5 1339 470 318 40 0 chr5 98866061 98866209 -53671050 - RSINE1 SINE B4 -10 155 2 5 1339 2712 240 48 34 chr5 98866414 98867204 -53670055 - Lx9 LINE L1 -209 7435 6635 5 1339 262 324 55 38 chr5 98868238 98868421 -53668838 - L2a LINE L2 -9 3417 3232 5 1339 7706 98 6 1 chr5 98868691 98870054 -53667205 - L1_Mus4 LINE L1 -1 6635 5266 5 1339 22 0 0 0 chr5 98870246 98870268 -53666991 + AT_rich Low_complexity Low_complexity 1 22 0 5 1339 234 231 0 0 chr5 98872176 98872241 -53665018 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1339 782 308 32 0 chr5 98872334 98872519 -53664740 - B4A SINE B4 -97 195 5 5 1339 1130 283 55 19 chr5 98872696 98873060 -53664199 - MTE2b LTR MaLR 0 379 3 5 1339 1014 33 0 0 chr5 98873642 98873764 -53663495 + (GA)n Simple_repeat Simple_repeat 2 123 0 5 1339 551 323 54 34 chr5 98875528 98875733 -53661526 - B3 SINE B2 -5 211 3 5 1339 301 333 58 63 chr5 98875965 98876170 -53661089 + L1MC LINE L1 4857 5060 -1086 5 1339 394 306 69 7 chr5 98876287 98876432 -53660827 + RSINE1 SINE B4 11 164 -1 5 1339 215 31 31 0 chr5 98876987 98877019 -53660240 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1339 302 230 0 26 chr5 98877102 98877178 -53660081 - L1MA5 LINE L1 -1 6299 6226 5 1339 244 290 99 78 chr5 98878541 98878732 -53658527 + MIR SINE MIR 20 214 -48 5 1339 1278 55 0 0 chr5 98881759 98881904 -53655355 - B1_Mus1 SINE Alu 0 148 4 5 1339 83 80 0 0 chr5 98881960 98882148 -53655111 + AT_rich Low_complexity Low_complexity 1 188 0 5 1339 239 292 48 0 chr5 98882235 98882362 -53654897 + L1M1 LINE L1 5753 5887 -413 5 1339 1073 23 0 8 chr5 98882637 98882767 -53654492 - L1Md_F2 LINE L1 -13 6569 6441 5 1339 1017 233 42 113 chr5 98883591 98883997 -53653262 - MTE2a LTR MaLR 0 379 3 5 1339 302 138 17 0 chr5 98884319 98884377 -53652882 + (TG)n Simple_repeat Simple_repeat 2 60 0 5 1339 249 343 19 19 chr5 98886328 98886432 -53650827 + PB1D10 SINE Alu 7 110 -7 5 1339 198 0 0 0 chr5 98887521 98887543 -53649716 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 5 1339 1079 105 14 0 chr5 98887618 98887761 -53649498 - B1_Mus1 SINE Alu -1 147 3 5 1339 7571 117 18 2 chr5 98887765 98889489 -53647770 - L1_Mus4 LINE L1 -2 6634 4876 5 1339 491 45 15 0 chr5 98889662 98889728 -53647531 + (TTATA)n Simple_repeat Simple_repeat 2 68 0 5 1339 233 119 0 23 chr5 98891419 98891462 -53645797 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 5 1339 275 245 28 56 chr5 98891514 98891622 -53645637 - PB1D10 SINE Alu -11 106 2 5 1339 1943 199 9 65 chr5 98891807 98892253 -53645006 + MTC LTR MaLR 1 421 0 5 1339 660 127 82 0 chr5 98892253 98892363 -53644896 + MTC-int LTR MaLR 1 119 -1139 5 1339 853 283 156 20 chr5 98892362 98892715 -53644544 + MTD LTR MaLR 5 405 -14 5 1339 662 320 81 3 chr5 98892729 98893014 -53644245 + MTD-int LTR MaLR 3 309 -1271 5 1339 905 312 98 65 chr5 98893006 98893258 -53644001 + MTD-int LTR MaLR 780 933 -647 5 1339 207 69 0 0 chr5 98893258 98893287 -53643972 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1339 946 283 70 48 chr5 98893287 98893628 -53643631 + MTC-int LTR MaLR 676 1290 -290 5 1339 207 0 0 0 chr5 98893628 98893651 -53643608 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5 1339 946 281 69 50 chr5 98893651 98893766 -53643493 + MTC-int LTR MaLR 985 1106 -152 5 1339 207 0 0 0 chr5 98893766 98893789 -53643470 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1339 598 316 85 139 chr5 98893789 98893875 -53643384 + MTD-int LTR MaLR 991 1092 -6 5 1339 1229 247 96 22 chr5 98893882 98894217 -53643042 + MTD LTR MaLR 2 358 -63 5 1339 261 0 0 0 chr5 98894217 98894246 -53643013 + (GAAAA)n Simple_repeat Simple_repeat 3 31 0 5 1339 1229 235 97 19 chr5 98894246 98894294 -53642965 + MTD LTR MaLR 356 404 -15 5 1339 301 280 81 56 chr5 98894487 98894684 -53642575 + L1MB1 LINE L1 5699 5900 -268 5 1339 245 301 0 26 chr5 98894715 98894831 -53642428 + L1MB1 LINE L1 5967 6079 -89 5 1339 452 289 39 50 chr5 98894840 98895099 -53642160 - L1M3 LINE L1 -430 5741 5486 5 1339 1326 201 171 112 chr5 98895131 98895569 -53641690 + MT2A LTR ERVL 2 465 -68 5 1339 216 150 32 48 chr5 98897065 98897128 -53640131 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 5 1339 228 300 0 16 chr5 98897324 98897385 -53639874 + CT-rich Low_complexity Low_complexity 1 60 0 5 1339 261 0 0 0 chr5 98897880 98897909 -53639350 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1339 316 308 26 33 chr5 98898040 98898191 -53639068 + RSINE1 SINE B4 2 151 -14 5 1339 195 42 0 0 chr5 98898198 98898222 -53639037 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1339 3408 64 78 24 chr5 98899324 98899788 -53637471 + L1_Mus1 LINE L1 6079 6567 0 5 1339 246 222 0 18 chr5 98900601 98900656 -53636603 + GA-rich Low_complexity Low_complexity 1 54 0 5 1339 22 35 0 0 chr5 98902495 98902524 -53634735 + AT_rich Low_complexity Low_complexity 1 29 0 5 1339 22 70 0 0 chr5 98902925 98902968 -53634291 + AT_rich Low_complexity Low_complexity 1 43 0 5 1339 425 241 15 22 chr5 98903201 98903332 -53633927 + Lx4B LINE L1 6907 7037 -21 5 1339 366 23 0 0 chr5 98903332 98903375 -53633884 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 5 1339 28 0 0 0 chr5 98903902 98903930 -53633329 + AT_rich Low_complexity Low_complexity 1 28 0 6 1339 248 276 81 121 chr5 98904009 98904207 -53633052 - MLT1F1 LTR MaLR -154 415 226 6 1339 227 255 186 39 chr5 98905687 98905789 -53631470 - PB1D10 SINE Alu 0 117 1 6 1339 23 92 0 0 chr5 98905853 98905918 -53631341 + AT_rich Low_complexity Low_complexity 1 65 0 6 1339 3856 47 31 2 chr5 98906791 98907307 -53629952 + L1Md_F2 LINE L1 5056 5586 -297 6 1339 8513 29 2 0 chr5 98907308 98908297 -53628962 + L1Md_F2 LINE L1 5588 6578 -4 6 1339 1511 271 70 35 chr5 98908868 98909683 -53627576 + Lx6 LINE L1 6455 7460 0 6 1339 25 31 0 0 chr5 98909689 98909721 -53627538 + AT_rich Low_complexity Low_complexity 1 32 0 6 1339 183 232 0 0 chr5 98909766 98909848 -53627411 + CT-rich Low_complexity Low_complexity 1 82 0 6 1339 445 227 109 0 chr5 98909957 98910067 -53627192 - B3 SINE B2 -94 122 1 6 1339 547 285 32 55 chr5 98910632 98910851 -53626408 + RLTR26 LTR ERVK 124 337 -305 6 1339 23 0 0 0 chr5 98911055 98911078 -53626181 + AT_rich Low_complexity Low_complexity 1 23 0 6 1339 616 308 98 23 chr5 98911189 98911790 -53625469 - Lx9 LINE L1 -38 7606 6961 6 1339 2883 170 2 19 chr5 98912130 98912664 -53624595 + RLTR12B LTR ERVK 1 525 -3 6 1339 243 0 0 0 chr5 98913038 98913065 -53624194 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1339 1196 61 0 0 chr5 98913776 98913924 -53623335 + B1_Mus1 SINE Alu 1 148 0 6 1339 22 0 0 0 chr5 98914019 98914041 -53623218 + AT_rich Low_complexity Low_complexity 1 22 0 6 1339 26 0 0 0 chr5 98914354 98914380 -53622879 + AT_rich Low_complexity Low_complexity 1 26 0 6 1339 842 313 14 3 chr5 98914997 98915289 -53621970 - Lx8 LINE L1 -862 6611 6317 6 1339 2011 174 18 50 chr5 98915712 98916111 -53621148 - ORR1B1 LTR MaLR -8 386 1 6 1339 246 193 33 22 chr5 98916154 98916244 -53621015 + (TA)n Simple_repeat Simple_repeat 2 92 0 6 1339 24142 55 2 1 chr5 98916341 98920236 -53617023 - L1Md_F2 LINE L1 0 6582 2683 6 1339 2872 93 2 119 chr5 98920235 98920782 -53616477 + L1Md_F LINE L1 473 955 -5564 6 1339 347 294 46 40 chr5 98921138 98921365 -53615894 + L1M2 LINE L1 5377 5606 -578 6 1339 619 178 51 0 chr5 98921652 98921770 -53615489 - Lx9 LINE L1 -387 7257 7134 6 1339 570 15 0 0 chr5 98921805 98921872 -53615387 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1339 520 264 31 23 chr5 98921881 98922009 -53615250 - RSINE1 SINE B4 -35 130 2 6 1339 283 306 21 63 chr5 98922612 98922755 -53614504 + L2c LINE L2 3247 3383 -4 6 1339 18833 149 90 8 chr5 98922872 98924268 -53612991 - L1_Mur2 LINE L1 -169 5708 4275 6 1339 546 16 0 0 chr5 98924268 98924331 -53612928 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1339 18833 149 90 8 chr5 98924331 98925517 -53611742 - L1_Mur2 LINE L1 -1603 4274 2849 6 1339 2663 63 3 0 chr5 98925517 98925848 -53611411 + IAPEY3_LTR LTR ERVK 1 332 0 6 1339 18833 149 90 8 chr5 98925848 98926619 -53610640 - L1_Mur2 LINE L1 -3029 2848 2057 6 1339 375 78 0 0 chr5 98926619 98926670 -53610589 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1339 18833 149 90 8 chr5 98926670 98927142 -53610117 - L1_Mur2 LINE L1 -3821 2056 1567 6 1339 223 385 10 0 chr5 98927548 98927644 -53609615 + RSINE1 SINE B4 69 165 0 6 1339 231 157 0 0 chr5 98927896 98927947 -53609312 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1339 706 259 18 12 chr5 98927973 98928141 -53609118 - B3A SINE B2 -16 182 14 6 1339 22 70 0 0 chr5 98929589 98929632 -53607627 + AT_rich Low_complexity Low_complexity 1 43 0 6 1339 1011 210 48 16 chr5 98931263 98931492 -53605767 - ORR1C2 LTR MaLR -5 379 149 6 1339 456 135 0 0 chr5 98931500 98931574 -53605685 + (GA)n Simple_repeat Simple_repeat 2 75 0 6 1339 864 168 65 0 chr5 98931574 98931729 -53605530 - ORR1C2 LTR MaLR -190 194 30 6 1339 254 302 57 23 chr5 98931842 98931930 -53605329 + ORR1E LTR MaLR 269 359 0 6 1339 1349 24 6 0 chr5 98932622 98932790 -53604469 - L1Md_F2 LINE L1 -1 6581 6413 6 1339 23 33 0 0 chr5 98934378 98934408 -53602851 + AT_rich Low_complexity Low_complexity 1 30 0 6 1339 364 237 143 8 chr5 98934870 98934989 -53602270 - Lx8 LINE L1 -1012 6461 6327 6 1339 491 271 135 27 chr5 98935729 98936030 -53601229 + MTEb LTR MaLR 4 376 -3 6 1339 373 325 56 68 chr5 98936986 98937148 -53600111 - L3 LINE CR1 -14 4475 4316 6 1339 180 111 0 0 chr5 98937335 98937362 -53599897 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 6 1339 279 0 0 0 chr5 98938867 98938898 -53598361 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1339 3334 192 48 18 chr5 98940933 98941894 -53595365 + Lx5 LINE L1 5143 6163 -887 6 1339 2131 183 114 37 chr5 98941894 98942383 -53594876 - RLTR11A2 LTR ERVK 0 527 1 6 1339 2452 207 89 28 chr5 98942383 98942537 -53594722 + Lx5 LINE L1 6164 6310 -740 6 1339 1436 135 199 21 chr5 98942537 98942863 -53594396 - RLTR12A LTR ERVK 0 568 185 6 1339 633 291 101 10 chr5 98943022 98943220 -53594039 + B3 SINE B2 1 216 0 6 1339 306 351 103 7 chr5 98943988 98944143 -53593116 + MamGypLTR2c LTR Gypsy 839 1008 -60 6 1339 367 184 11 11 chr5 98944865 98944953 -53592306 + (TATG)n Simple_repeat Simple_repeat 4 91 0 6 1339 502 312 128 31 chr5 98944964 98945222 -53592037 - B4A SINE B4 -8 284 2 6 1339 344 356 0 0 chr5 98946293 98946383 -53590876 + PB1D10 SINE Alu 13 102 -15 6 1339 1283 291 25 38 chr5 98946384 98946855 -53590404 + Lx7 LINE L1 6136 6600 -1096 6 1339 687 99 0 0 chr5 98946939 98947040 -53590219 + (TCC)n Simple_repeat Simple_repeat 2 102 0 6 1339 285 75 0 0 chr5 98947031 98947071 -53590188 + (TC)n Simple_repeat Simple_repeat 2 41 0 6 1339 665 276 81 0 chr5 98947099 98947284 -53589975 + Lx9 LINE L1 6358 6557 -1087 6 1339 1271 299 80 47 chr5 98947326 98948066 -53589193 + Lx9 LINE L1 6664 7427 -217 6 1339 895 92 0 26 chr5 98949500 98949656 -53587603 + RMER17B LTR ERVK 312 463 -495 6 1339 183 205 0 0 chr5 98949656 98949695 -53587564 + A-rich Low_complexity Low_complexity 2 40 0 6 1339 344 187 0 32 chr5 98950433 98950527 -53586732 + CT-rich Low_complexity Low_complexity 2 92 0 6 1339 319 292 0 94 chr5 98950533 98950639 -53586620 - PB1D10 SINE Alu -21 96 1 6 1339 334 297 33 17 chr5 98951168 98951288 -53585971 - MTEa LTR MaLR -2 377 256 6 1339 897 226 14 19 chr5 98951633 98951849 -53585410 + B3 SINE B2 1 215 -1 6 1339 322 246 0 28 chr5 98953438 98953509 -53583750 - B3A SINE B2 -127 71 3 6 1339 379 198 0 34 chr5 98955273 98955287 -53581972 + L1_Mus4 LINE L1 6054 6065 -502 6 1339 3191 80 34 9 chr5 98955287 98955731 -53581528 - L1_Mus4 LINE L1 -6 6630 6176 6 1339 557 78 0 0 chr5 98955731 98955808 -53581451 + L1_Mus4 LINE L1 6066 6142 -494 6 1339 567 341 31 13 chr5 98955939 98956164 -53581095 + B4A SINE B4 2 230 -62 6 1339 456 324 36 0 chr5 98956164 98956303 -53580956 + RSINE1 SINE B4 3 146 -19 6 1339 910 58 0 0 chr5 98958471 98958592 -53578667 - L1_Mus1 LINE L1 -1 6566 6446 6 167 29725 98 7 3 chr5 98958592 98960035 -53577224 - L1Md_F LINE L1 -91 5792 4348 6 1340 1575 32 5 0 chr5 98960035 98960223 -53577036 + B2_Mm1t SINE B2 2 190 -3 6 1340 29725 120 15 21 chr5 98960223 98964411 -53572848 - L1Md_F LINE L1 -1536 4347 184 6 1340 27 29 0 0 chr5 98967174 98967208 -53570051 + AT_rich Low_complexity Low_complexity 1 34 0 6 1340 418 244 1 44 chr5 98967348 98967462 -53569797 + PB1D10 SINE Alu 9 116 -1 6 1340 25 0 0 0 chr5 98969178 98969203 -53568056 + AT_rich Low_complexity Low_complexity 1 25 0 6 1340 1495 221 69 18 chr5 98969254 98969586 -53567673 - MTD LTR MaLR -70 349 1 6 1340 2154 245 97 48 chr5 98969586 98970276 -53566983 - MTD-int LTR MaLR 0 1258 535 6 1340 1429 220 158 136 chr5 98970853 98971833 -53565426 + RMER1B Other Other 62 1063 -3 6 1340 1284 229 64 3 chr5 98971948 98972310 -53564949 + MTD LTR MaLR 1 418 -1 6 1340 195 42 0 0 chr5 98973548 98973572 -53563687 + (TA)n Simple_repeat Simple_repeat 1 24 0 6 1340 220 294 118 11 chr5 98974225 98974318 -53562941 + PB1 SINE Alu 23 125 -2 6 1340 248 279 0 81 chr5 98974325 98974399 -53562860 + ID4_ SINE ID 2 69 -14 6 1340 245 151 19 0 chr5 98974401 98974454 -53562805 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 6 1340 2200 169 21 5 chr5 98974456 98974836 -53562423 + ORR1B1 LTR MaLR 1 388 -6 6 1340 189 74 0 0 chr5 98974836 98974863 -53562396 + (CAGA)n Simple_repeat Simple_repeat 1 27 0 6 1340 25 0 0 0 chr5 98975540 98975565 -53561694 + AT_rich Low_complexity Low_complexity 1 25 0 6 1340 210 37 0 0 chr5 98979858 98979885 -53557374 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1340 2767 141 10 40 chr5 98979981 98980461 -53556798 + RMER4A LTR ERVK 1 466 0 6 1340 189 279 0 93 chr5 98980509 98980584 -53556675 + L2c LINE L2 3320 3387 0 6 1340 326 301 218 16 chr5 98981078 98981388 -53555871 - MLT1A0 LTR MaLR 0 374 1 6 1340 183 80 0 0 chr5 98981398 98981423 -53555836 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1340 188 61 0 57 chr5 98983032 98983067 -53554192 + (TAAAAA)n Simple_repeat Simple_repeat 5 37 0 6 1340 369 62 0 0 chr5 98983239 98983287 -53553972 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1340 22 0 0 0 chr5 98983444 98983466 -53553793 + AT_rich Low_complexity Low_complexity 1 22 0 6 1340 462 323 73 26 chr5 98985457 98985730 -53551529 + B4A SINE B4 1 286 -6 6 1340 266 0 0 29 chr5 98985788 98985823 -53551436 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 6 1340 409 279 15 30 chr5 98985839 98985972 -53551287 + Lx8 LINE L1 7203 7333 -140 6 1340 387 85 59 17 chr5 98985976 98986095 -53551164 + (TA)n Simple_repeat Simple_repeat 1 124 0 6 1340 428 321 74 7 chr5 98986703 98986838 -53550421 - RSINE1 SINE B4 -8 157 14 6 1340 1288 251 31 131 chr5 98987843 98988477 -53548782 - Lx7 LINE L1 -2 7694 7124 6 1340 360 0 0 0 chr5 98988576 98988616 -53548643 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1340 485 301 49 0 chr5 98988769 98988892 -53548367 + ID_B1 SINE B4 91 219 -5 6 1340 1016 287 91 94 chr5 98988987 98989637 -53547622 + Lx8 LINE L1 6289 6936 -537 6 1340 450 337 132 18 chr5 98990232 98990875 -53546384 + L1M2 LINE L1 4425 5135 -1008 7 1340 2855 113 54 7 chr5 98990875 98990983 -53546276 - Lx LINE L1 -5 6649 6538 7 1340 186 43 0 0 chr5 98990983 98991006 -53546253 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 7 1340 2855 113 54 7 chr5 98991006 98991341 -53545918 - Lx LINE L1 -117 6537 6187 7 1340 450 337 132 18 chr5 98991341 98991531 -53545728 + L1M2 LINE L1 5136 5352 -791 7 1340 253 272 101 0 chr5 98992186 98992344 -53544915 + L1ME3B LINE L1 5981 6154 -86 7 1340 25 0 0 0 chr5 98993117 98993142 -53544117 + GC_rich Low_complexity Low_complexity 1 25 0 7 1340 4891 220 80 25 chr5 98993199 98994577 -53542682 - Lx7 LINE L1 -76 7620 6168 7 1340 309 51 0 0 chr5 98994577 98994616 -53542643 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 7 1340 5144 66 3 10 chr5 98996349 98997019 -53540240 - L1_Mus1 LINE L1 -4 6563 5899 7 1340 4442 168 43 82 chr5 98997737 98998674 -53538585 + RMER19B LTR ERVK 3 902 0 7 1340 440 192 25 16 chr5 99000229 99000351 -53536908 + Lx6 LINE L1 7311 7433 -27 1 1340 616 357 33 1 chr5 99001134 99001399 -53535860 - Lx8 LINE L1 -164 7309 7026 2 1340 25 0 0 0 chr5 99002312 99002337 -53534922 + AT_rich Low_complexity Low_complexity 1 25 0 3 1340 261 0 0 0 chr5 99002411 99002440 -53534819 + (TC)n Simple_repeat Simple_repeat 1 29 0 4 1340 357 197 0 0 chr5 99002441 99002517 -53534742 + (TA)n Simple_repeat Simple_repeat 2 77 0 5 1340 202 344 0 0 chr5 99006014 99006075 -53531184 - MIR3 SINE MIR -8 200 140 6 1340 237 246 233 27 chr5 99007834 99007980 -53529279 + MIR SINE MIR 70 245 -17 7 1340 820 147 223 0 chr5 99008179 99008363 -53528896 + URR1B DNA MER1_type 1 225 0 8 1340 890 109 0 64 chr5 99009103 99009260 -53527999 + B1_Mur3 SINE Alu 2 148 -1 9 1340 255 31 0 0 chr5 99009266 99009298 -53527961 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1340 1032 54 0 20 chr5 99009300 99009451 -53527808 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 1 1340 651 201 4 18 chr5 99009453 99009726 -53527533 + GA-rich Low_complexity Low_complexity 1 268 0 1 1340 195 69 0 0 chr5 99009795 99009824 -53527435 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1340 1710 60 19 23 chr5 99010711 99010968 -53526291 + L1_Mus3 LINE L1 6379 6634 -4 1 1340 322 314 0 11 chr5 99013028 99013115 -53524144 + ID_B1 SINE B4 133 218 -6 1 1340 553 313 40 5 chr5 99013138 99013337 -53523922 + B3 SINE B2 1 206 -10 1 1340 195 129 0 0 chr5 99013378 99013409 -53523850 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1340 353 322 118 55 chr5 99013481 99013770 -53523489 - MLT1J1 LTR MaLR -127 317 11 1 1340 2570 202 64 76 chr5 99015145 99015636 -53521623 + L1_Mur3 LINE L1 861 1253 -5833 1 1340 1034 28 7 21 chr5 99015636 99015781 -53521478 + (GAA)n Simple_repeat Simple_repeat 2 144 0 2 1340 2570 168 50 9 chr5 99015781 99016277 -53520982 + L1_Mur3 LINE L1 1254 1772 -4105 1 1340 24763 144 39 17 chr5 99016272 99022132 -53515127 - L1_Mus4 LINE L1 -2 6634 656 2 1340 13292 192 94 31 chr5 99022203 99022568 -53514691 + L1_Mur3 LINE L1 1761 2084 -3796 1 1340 189 0 0 0 chr5 99022568 99022589 -53514670 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2 1340 13292 192 94 31 chr5 99022589 99024609 -53512650 + L1_Mur3 LINE L1 2085 4307 -1573 1 1340 210 37 0 0 chr5 99024609 99024636 -53512623 + (CTAA)n Simple_repeat Simple_repeat 2 28 0 2 1340 13292 192 94 31 chr5 99024636 99025657 -53511602 + L1_Mur3 LINE L1 4308 5382 -498 1 1340 275 239 14 27 chr5 99025716 99025789 -53511470 + Lx6 LINE L1 7155 7226 -234 2 1340 1595 226 44 16 chr5 99025800 99026051 -53511208 + Lx5 LINE L1 6455 6894 -566 2 1340 234 0 0 0 chr5 99026051 99026077 -53511182 + (CACTA)n Simple_repeat Simple_repeat 5 30 0 2 1340 357 24 0 0 chr5 99026077 99026118 -53511141 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1340 1595 259 87 22 chr5 99026118 99026204 -53511055 + Lx5 LINE L1 6653 6736 -314 2 1340 458 0 35 0 chr5 99026204 99026261 -53510998 + (TTATG)n Simple_repeat Simple_repeat 1 59 0 2 1340 1595 251 15 63 chr5 99026261 99026442 -53510817 + Lx5 LINE L1 6737 6893 -157 2 1340 471 282 11 17 chr5 99026542 99026722 -53510537 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1340 764 58 0 0 chr5 99026930 99027033 -53510226 + B1_Mus1 SINE Alu 36 138 -10 3 1340 396 0 0 0 chr5 99027033 99027077 -53510182 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 3 1340 3476 94 0 0 chr5 99027247 99027725 -53509534 - L1_Mus4 LINE L1 0 6636 6159 3 1340 1629 77 14 0 chr5 99027725 99027946 -53509313 + L1_Mus4 LINE L1 5926 6149 -487 3 1340 335 286 153 0 chr5 99028057 99028155 -53509104 - RSINE1 SINE B4 -45 120 8 3 1340 648 346 72 3 chr5 99028353 99028686 -53508573 + Cheshire DNA MER1_type 1 356 -2064 3 1340 379 295 90 104 chr5 99028717 99029073 -53508186 + Cheshire DNA MER1_type 510 860 -1560 3 1340 405 0 0 0 chr5 99029094 99029139 -53508120 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1340 271 273 15 0 chr5 99029139 99029205 -53508054 - ID4_ SINE ID -11 72 6 3 1340 396 372 21 38 chr5 99029333 99029568 -53507691 - RMER15 LTR ERVL -70 505 275 3 1340 769 320 181 21 chr5 99029730 99030387 -53506872 + Cheshire DNA MER1_type 884 1645 -775 3 1340 544 327 150 44 chr5 99030419 99030811 -53506448 - MLT1E3 LTR MaLR 0 624 196 3 1340 1359 247 91 54 chr5 99030981 99031478 -53505781 + Cheshire DNA MER1_type 1709 2223 -197 3 1340 216 0 0 0 chr5 99031766 99031790 -53505469 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1340 939 242 67 111 chr5 99031862 99032178 -53505081 + MT2A LTR ERVL 1 302 -231 4 1340 24 32 0 0 chr5 99032504 99032535 -53504724 + AT_rich Low_complexity Low_complexity 1 31 0 4 1340 396 0 0 0 chr5 99032581 99032625 -53504634 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 1340 269 328 38 9 chr5 99032653 99032771 -53504488 - MIR SINE MIR -121 155 42 4 1340 226 299 39 0 chr5 99033034 99033111 -53504148 + MIRc SINE MIR 72 151 -117 4 1340 1386 274 51 0 chr5 99033804 99034154 -53503105 - MTEa LTR MaLR -8 371 4 4 1340 180 268 0 0 chr5 99034749 99034790 -53502469 - MIR SINE MIR 0 262 222 4 1340 230 348 62 80 chr5 99038129 99038354 -53498905 - L2c LINE L2 0 3387 3167 4 1340 714 254 46 27 chr5 99039265 99039285 -53497974 + Lx2B LINE L1 5765 5784 -783 4 1340 477 0 0 0 chr5 99039285 99039338 -53497921 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 4 1340 2979 178 24 12 chr5 99039338 99039926 -53497333 + Lx2B LINE L1 5785 6386 -614 4 1340 839 107 20 7 chr5 99040387 99040538 -53496721 - L1_Mus3 LINE L1 0 6638 6486 5 1340 387 113 0 0 chr5 99040651 99040704 -53496555 - L1_Mur3 LINE L1 -1356 4524 4472 5 1340 7363 109 19 9 chr5 99040695 99041867 -53495392 - L1_Mm LINE L1 -1464 4419 3237 5 1340 1990 101 20 3 chr5 99041907 99042204 -53495055 - L1_Mus3 LINE L1 -6 6632 6331 5 1340 1238 113 0 0 chr5 99042204 99042381 -53494878 + L1_Mm LINE L1 4797 4973 -910 5 1340 303 130 0 0 chr5 99042482 99042536 -53494723 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1340 225 0 0 0 chr5 99044549 99044574 -53492685 + (TG)n Simple_repeat Simple_repeat 2 26 0 5 1340 352 353 83 14 chr5 99044880 99045102 -53492157 + MLT1F2 LTR MaLR 1 224 -324 5 1340 399 303 111 43 chr5 99045130 99045337 -53491922 + MLT1F2 LTR MaLR 340 560 0 5 1340 329 380 26 62 chr5 99049336 99049563 -53487696 - MTEa LTR MaLR -157 222 4 5 1340 2092 214 7 5 chr5 99050081 99050508 -53486751 - Lx9 LINE L1 -427 7217 6790 5 1340 900 201 50 0 chr5 99050506 99050705 -53486554 + Lx9 LINE L1 7264 7472 -172 5 1340 392 119 103 56 chr5 99050738 99050845 -53486414 + Lx9 LINE L1 7532 7643 -1 5 1340 627 255 85 0 chr5 99050868 99051056 -53486203 + ID_B1 SINE B4 2 205 -19 6 1340 330 194 0 0 chr5 99051110 99051182 -53486077 + GA-rich Low_complexity Low_complexity 1 72 0 6 1340 25 65 0 0 chr5 99051635 99051681 -53485578 + AT_rich Low_complexity Low_complexity 1 46 0 6 1340 314 291 246 18 chr5 99052281 99052505 -53484754 - L1MC3 LINE L1 -126 7659 7385 6 1340 668 267 123 0 chr5 99052506 99052693 -53484566 - ID_B1 SINE B4 -13 211 2 6 1340 573 306 25 33 chr5 99052725 99052965 -53484294 + Lx8 LINE L1 6923 7160 -313 6 1340 24 0 0 0 chr5 99053068 99053092 -53484167 + AT_rich Low_complexity Low_complexity 1 24 0 6 1340 471 113 0 0 chr5 99054251 99054322 -53482937 + (TCCC)n Simple_repeat Simple_repeat 4 74 0 6 1340 609 277 54 6 chr5 99054846 99055013 -53482246 + ORR1D1 LTR MaLR 1 175 -199 6 1340 264 77 0 0 chr5 99055017 99055056 -53482203 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 6 1340 217 204 0 53 chr5 99056219 99056276 -53480983 + L4 LINE RTE 1799 1852 -177 7 1340 1683 56 5 0 chr5 99056590 99056806 -53480453 - L1Md_T LINE L1 0 6582 6366 7 1340 26 30 0 0 chr5 99057133 99057166 -53480093 + AT_rich Low_complexity Low_complexity 1 33 0 7 1340 257 333 136 18 chr5 99057260 99057466 -53479793 + MIR SINE MIR 37 262 0 7 1340 23 0 0 0 chr5 99057508 99057531 -53479728 + AT_rich Low_complexity Low_complexity 1 23 0 7 1340 360 0 0 0 chr5 99058570 99058610 -53478649 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1340 24 67 0 0 chr5 99058992 99059037 -53478222 + AT_rich Low_complexity Low_complexity 1 45 0 7 1340 1093 319 88 63 chr5 99059559 99060192 -53477067 - Lx8 LINE L1 -2 7471 6823 7 1340 541 299 87 35 chr5 99060639 99061165 -53476094 - L1MCa LINE L1 -387 6581 6028 7 1340 359 325 8 8 chr5 99061492 99061610 -53475649 + MLT1D LTR MaLR 364 481 -24 7 1340 543 16 0 0 chr5 99062257 99062321 -53474938 + (TA)n Simple_repeat Simple_repeat 2 65 0 8 1340 244 102 41 0 chr5 99062689 99062738 -53474521 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 8 1340 370 314 142 29 chr5 99062747 99063435 -53473824 - L1MCa LINE L1 -1992 4949 4184 7 1340 285 326 0 0 chr5 99063821 99063907 -53473352 + RSINE1 SINE B4 43 128 -37 8 1340 256 300 37 44 chr5 99064143 99064279 -53472980 - L1ME2 LINE L1 -192 5972 5838 8 1340 1468 213 82 3 chr5 99064342 99064671 -53472588 - MTD LTR MaLR 0 419 65 8 1340 34461 67 3 6 chr5 99064673 99070878 -53466381 - L1Md_F2 LINE L1 -13 6569 387 8 1340 279 175 35 0 chr5 99070878 99070935 -53466324 - MTD LTR MaLR -342 77 19 8 1340 916 123 23 0 chr5 99070940 99071111 -53466148 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 8 1340 21 71 0 0 chr5 99071257 99071299 -53465960 + AT_rich Low_complexity Low_complexity 1 42 0 8 1340 243 302 0 0 chr5 99071573 99071732 -53465527 + (TG)n Simple_repeat Simple_repeat 2 160 0 8 1340 454 287 66 74 chr5 99071955 99072467 -53464792 - L1MCa LINE L1 -4826 2211 1704 7 1340 248 259 122 26 chr5 99072684 99072799 -53464460 - L1MCa LINE L1 -5263 1160 1035 7 1340 184 270 30 45 chr5 99073528 99073594 -53463665 + L2c LINE L2 3068 3132 -255 8 1340 583 309 59 24 chr5 99075444 99075699 -53461560 + B4 SINE B4 29 292 0 9 1340 250 216 101 31 chr5 99076566 99076695 -53460564 - Lx7 LINE L1 0 7696 7559 9 1340 452 269 124 6 chr5 99076763 99076924 -53460335 - Lx7 LINE L1 -375 7321 7142 9 1340 210 71 0 0 chr5 99077926 99077954 -53459305 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1340 393 177 0 0 chr5 99078069 99078148 -53459111 + (TG)n Simple_repeat Simple_repeat 2 80 0 9 1340 240 324 0 56 chr5 99078174 99078246 -53459013 - RSINE1 SINE B4 -21 144 77 9 1340 624 14 0 0 chr5 99078650 99078723 -53458536 + (TC)n Simple_repeat Simple_repeat 2 74 0 9 1340 213 39 0 0 chr5 99078723 99078748 -53458511 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1340 191 308 176 10 chr5 99080002 99080153 -53457106 - MIR SINE MIR -28 240 76 9 1340 503 327 60 124 chr5 99080161 99080541 -53456718 - MLT1E3 LTR MaLR -10 643 288 9 1340 251 337 47 0 chr5 99080614 99080700 -53456559 - MLT1E3 LTR MaLR -570 110 21 9 1340 1129 314 103 14 chr5 99080720 99081224 -53456035 - MLT1E3-int LTR MaLR -40 1449 901 9 1340 239 320 50 10 chr5 99081505 99081606 -53455653 + ORR1E LTR MaLR 253 357 -2 9 1340 212 43 42 42 chr5 99081658 99081706 -53455553 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 1 1340 305 352 40 85 chr5 99081724 99081901 -53455358 - MLT1E3-int LTR MaLR -585 904 736 9 1340 273 146 0 0 chr5 99081965 99082013 -53455246 + (TTC)n Simple_repeat Simple_repeat 2 49 0 1 1340 1071 80 0 0 chr5 99082027 99082164 -53455095 - B1_Mus1 SINE Alu -10 138 2 1 1340 250 331 18 74 chr5 99082178 99082341 -53454918 - MLT1E3-int LTR MaLR -1110 379 226 9 1340 733 206 78 218 chr5 99082829 99083264 -53453995 + ORR1D1 LTR MaLR 1 374 0 1 1340 245 315 0 0 chr5 99083268 99083322 -53453937 + ORR1D1-int LTR MaLR 5 58 -1312 1 1340 5849 220 25 40 chr5 99083365 99084437 -53452822 + ORR1D1-int LTR MaLR 47 1083 -287 1 1340 225 0 0 0 chr5 99084437 99084462 -53452797 + (TTGG)n Simple_repeat Simple_repeat 2 26 0 1 1340 5849 220 25 40 chr5 99084462 99084734 -53452525 + ORR1D1-int LTR MaLR 1084 1370 0 1 1340 892 200 126 3 chr5 99084736 99084964 -53452295 + ORR1D1 LTR MaLR 3 367 0 1 1340 228 193 53 0 chr5 99084969 99085026 -53452233 + L1_Mur3 LINE L1 4350 4409 -1471 1 1340 1011 85 0 0 chr5 99085144 99085273 -53451986 + B1_Mus1 SINE Alu 1 129 -19 1 1340 378 0 0 0 chr5 99087542 99087584 -53449675 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1340 272 380 0 42 chr5 99088388 99088506 -53448753 - PB1D7 SINE Alu -7 113 1 1 1340 2977 64 20 18 chr5 99089486 99089885 -53447374 + MTB LTR MaLR 1 400 0 1 1341 328 303 152 53 chr5 99090470 99090714 -53446545 - L1MD2 LINE L1 -2 6357 6090 1 1341 310 27 0 0 chr5 99091766 99091803 -53445456 - HAL1-3A_ME LINE L1 -847 2011 1975 1 1341 236 217 11 0 chr5 99091803 99091895 -53445364 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1341 491 313 24 12 chr5 99091989 99092157 -53445102 - Lx8 LINE L1 -169 7304 7135 1 1341 888 301 30 134 chr5 99093942 99094510 -53442749 + RLTR18B LTR ERVK 3 511 -1 1 1341 202 156 44 0 chr5 99094767 99094812 -53442447 + A-rich Low_complexity Low_complexity 6 52 0 1 1341 633 264 56 33 chr5 99094813 99094993 -53442266 + Lx7 LINE L1 6400 6583 -1113 1 1341 2759 52 9 0 chr5 99095897 99096240 -53441019 + ORR1A1 LTR MaLR 1 346 0 1 1341 273 182 0 0 chr5 99096412 99096467 -53440792 + CT-rich Low_complexity Low_complexity 3 57 0 1 1341 628 317 181 9 chr5 99097610 99098030 -53439229 - Lx9 LINE L1 -203 7441 6950 1 1341 3342 281 78 88 chr5 99098021 99098338 -53438921 - L1_Rod LINE L1 -1488 4359 4054 1 1341 606 38 0 0 chr5 99098338 99098418 -53438841 - B1_Mm SINE Alu 0 147 68 1 1341 3342 281 78 88 chr5 99098418 99098918 -53438341 - L1_Rod LINE L1 -1488 4053 3569 1 1341 949 125 0 0 chr5 99098918 99099054 -53438205 + B1_Mus1 SINE Alu 2 137 -11 1 1341 3342 281 78 88 chr5 99099054 99100024 -53437235 - L1_Rod LINE L1 -2279 3568 2507 1 1341 4253 110 26 2 chr5 99100024 99100668 -53436591 - L1_Mus4 LINE L1 0 6636 5977 1 1341 3342 281 78 88 chr5 99100668 99101422 -53435837 - L1_Rod LINE L1 -3341 2506 1763 1 1341 329 260 0 0 chr5 99101417 99101521 -53435738 - Lx9 LINE L1 -6 7638 7535 1 1341 183 80 0 0 chr5 99101534 99101559 -53435700 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1341 391 281 32 16 chr5 99101564 99101687 -53435572 - Lx9 LINE L1 -179 7465 7341 1 1341 1011 230 11 31 chr5 99101694 99101981 -53435278 - L1_Rod LINE L1 -4071 1776 1496 1 1341 308 256 74 53 chr5 99102577 99102645 -53434614 + PB1D10 SINE Alu 16 85 -35 1 1341 284 0 28 0 chr5 99102645 99102681 -53434578 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1341 280 256 74 53 chr5 99102681 99102707 -53434552 + PB1D7 SINE Alu 86 113 -7 1 1341 27 49 0 0 chr5 99103069 99103110 -53434149 + AT_rich Low_complexity Low_complexity 1 41 0 1 1341 2863 35 0 0 chr5 99103115 99103457 -53433802 - L1Md_T LINE L1 -1 6581 6240 1 1341 1504 217 86 9 chr5 99103473 99103821 -53433438 + ORR1C1 LTR MaLR 1 375 -3 1 1341 24 0 0 0 chr5 99103850 99103874 -53433385 + AT_rich Low_complexity Low_complexity 1 24 0 1 1341 646 319 159 53 chr5 99104016 99104463 -53432796 - Lx8 LINE L1 -175 7298 6805 1 1341 876 313 35 16 chr5 99104474 99104789 -53432470 - Lx8 LINE L1 -1014 6459 6139 1 1341 356 141 165 0 chr5 99104794 99104879 -53432380 + Lx9 LINE L1 7357 7455 -189 1 1341 2977 261 84 34 chr5 99104884 99106126 -53431133 - Lx8 LINE L1 -325 5555 4251 1 1341 180 0 0 0 chr5 99106253 99106273 -53430986 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1341 317 321 55 40 chr5 99107585 99107786 -53429473 + MER121 Unknown Unknown 90 293 -119 1 1341 573 55 0 0 chr5 99107975 99108048 -53429211 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1341 264 277 43 0 chr5 99109195 99109289 -53427970 - MER33 DNA MER1_type -5 319 222 1 1341 612 338 85 6 chr5 99109774 99110137 -53427122 - L1MB3 LINE L1 -99 6084 5693 1 1341 4818 216 52 31 chr5 99110305 99111436 -53425823 + ORR1D1-int LTR MaLR 216 1370 0 1 1341 1133 216 58 116 chr5 99111436 99111833 -53425426 + ORR1D1 LTR MaLR 1 374 0 1 1341 251 283 7 46 chr5 99111845 99111997 -53425262 - Lx9 LINE L1 -45 7599 7454 1 1341 470 174 12 0 chr5 99112002 99112163 -53425096 + (TCTA)n Simple_repeat Simple_repeat 4 166 0 1 1341 2142 220 8 12 chr5 99112163 99112647 -53424612 - Lx9 LINE L1 -232 7412 6931 1 1341 310 167 0 0 chr5 99112643 99112697 -53424562 - L1_Rod LINE L1 -108 5739 5686 1 1341 1426 201 18 50 chr5 99112700 99113098 -53424161 + L1_Rod LINE L1 5286 5670 -177 1 1341 234 330 0 55 chr5 99113562 99113671 -53423588 + B3 SINE B2 109 211 -5 1 1341 1114 224 61 45 chr5 99113765 99114209 -53423050 - L1M4c LINE L1 -4000 2384 1934 1 1341 426 53 0 0 chr5 99114641 99114698 -53422561 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 1 1341 29 60 0 0 chr5 99114733 99114783 -53422476 + AT_rich Low_complexity Low_complexity 1 50 0 1 1341 227 103 0 25 chr5 99116117 99116157 -53421102 + (GGA)n Simple_repeat Simple_repeat 2 40 0 1 1341 616 262 24 6 chr5 99116662 99116827 -53420432 - B3A SINE B2 -16 182 15 1 1341 245 279 0 34 chr5 99117029 99117118 -53420141 - MTEb LTR MaLR -20 359 274 1 1341 24 32 0 0 chr5 99117622 99117653 -53419606 + AT_rich Low_complexity Low_complexity 1 31 0 1 1341 3469 23 2 0 chr5 99117659 99118054 -53419205 + MTA_Mm LTR MaLR 1 396 0 1 1341 2620 223 58 20 chr5 99118434 99119071 -53418188 - Lx6 LINE L1 -16 7444 6784 1 1341 288 77 0 0 chr5 99119666 99119705 -53417554 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1341 364 292 57 21 chr5 99120482 99120622 -53416637 + MIR SINE MIR 99 243 -19 1 1341 765 321 87 46 chr5 99120947 99121336 -53415923 + MLT1C LTR MaLR 61 465 -2 1 1341 234 231 31 0 chr5 99121759 99121824 -53415435 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 1 1341 234 0 0 0 chr5 99122576 99122602 -53414657 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1 1341 1977 161 30 16 chr5 99122602 99122974 -53414285 - Lx4B LINE L1 -16 7042 6666 1 1341 414 100 0 0 chr5 99123412 99123472 -53413787 + (GGA)n Simple_repeat Simple_repeat 3 62 0 1 1341 444 333 49 15 chr5 99124535 99124739 -53412520 + ID_B1 SINE B4 2 212 -12 1 1341 537 99 0 0 chr5 99124833 99124914 -53412345 + (GGA)n Simple_repeat Simple_repeat 1 81 0 1 1341 622 327 110 48 chr5 99126741 99126818 -53410441 + LTR16A LTR ERVL 89 176 -275 1 1341 288 0 0 0 chr5 99126818 99126850 -53410409 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1341 622 327 110 48 chr5 99126850 99127109 -53410150 + LTR16A LTR ERVL 177 446 -5 1 1341 22 0 0 0 chr5 99128025 99128047 -53409212 + AT_rich Low_complexity Low_complexity 1 22 0 1 1341 1904 137 62 6 chr5 99128048 99128387 -53408872 - Lx3C LINE L1 0 6976 6619 1 1341 417 273 137 0 chr5 99128692 99128875 -53408384 - MER2 DNA MER2_type -42 303 96 1 1341 561 55 0 0 chr5 99128905 99128978 -53408281 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1341 246 128 0 0 chr5 99129168 99129207 -53408052 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1341 467 301 41 74 chr5 99130373 99130617 -53406642 - ORR1E LTR MaLR -123 236 1 1 1341 321 109 0 0 chr5 99131791 99131846 -53405413 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1341 274 222 44 0 chr5 99132572 99132603 -53404656 + (CAGAGA)n Simple_repeat Simple_repeat 3 34 0 1 1341 279 0 0 0 chr5 99132603 99132634 -53404625 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1341 274 222 44 0 chr5 99132634 99132692 -53404567 + (CAGAGA)n Simple_repeat Simple_repeat 5 65 0 1 1341 775 220 18 11 chr5 99133850 99134024 -53403235 - ID_B1 SINE B4 -53 239 65 1 1341 256 221 25 38 chr5 99134338 99134418 -53402841 + L1M4c LINE L1 58 136 -6248 1 1341 333 271 50 80 chr5 99134792 99135093 -53402166 + L1M4c LINE L1 1088 1379 -5005 1 1341 344 322 155 9 chr5 99135115 99135347 -53401912 + L1M4c LINE L1 2107 2372 -4012 1 1341 507 256 77 16 chr5 99135347 99135530 -53401729 + L1M4c LINE L1 2664 2857 -3525 1 1341 492 289 89 13 chr5 99135740 99135943 -53401316 - B3A SINE B2 0 216 3 1 1341 343 344 66 76 chr5 99136008 99136206 -53401053 + B3A SINE B2 3 198 0 1 1341 640 268 45 62 chr5 99136379 99136641 -53400618 + Lx8 LINE L1 5622 5920 -1553 1 1341 288 0 0 0 chr5 99136829 99136861 -53400398 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1341 188 23 65 43 chr5 99137401 99137447 -53399812 + (TAAAAA)n Simple_repeat Simple_repeat 1 47 0 1 1341 231 125 0 0 chr5 99137457 99137497 -53399762 + (TCC)n Simple_repeat Simple_repeat 1 40 0 1 1341 793 239 5 71 chr5 99139306 99139518 -53397741 - B3A SINE B2 0 198 1 1 1341 233 263 51 26 chr5 99140500 99140578 -53396681 - MIR SINE MIR -70 192 113 1 1341 435 189 54 7 chr5 99141020 99141130 -53396129 + B1_Mur4 SINE Alu 3 147 -3 1 1341 250 185 62 0 chr5 99142193 99142258 -53395001 + Lx9 LINE L1 7570 7638 -6 1 1341 183 299 87 29 chr5 99143076 99143145 -53394114 - L2a LINE L2 -62 3364 3292 1 1341 1089 0 0 0 chr5 99145731 99145852 -53391407 + (TCTCCC)n Simple_repeat Simple_repeat 1 121 0 1 1341 233 309 24 12 chr5 99145870 99145952 -53391307 - PB1D10 SINE Alu -8 109 27 1 1341 584 111 0 10 chr5 99146233 99146333 -53390926 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 1 1341 1090 75 0 13 chr5 99146334 99146483 -53390776 - B1_Mus1 SINE Alu 0 148 2 1 1341 544 316 121 35 chr5 99147124 99148314 -53388945 + L1_Mur3 LINE L1 1505 2813 -3034 1 1341 351 319 61 9 chr5 99148355 99148662 -53388597 + L1_Mur3 LINE L1 3065 3358 -2522 1 1341 1512 312 70 25 chr5 99149238 99149329 -53387930 + L1_Mur3 LINE L1 3681 3773 -2107 1 1341 2348 160 68 67 chr5 99149329 99149885 -53387374 - RLTR31B_Mm LTR ERVK 0 557 1 1 1341 1512 312 70 25 chr5 99149885 99150901 -53386358 + L1_Mur3 LINE L1 3774 4837 -1043 1 1341 307 219 31 0 chr5 99150909 99150973 -53386286 - ORR1C1 LTR MaLR -310 68 3 1 1341 222 291 0 0 chr5 99151535 99151590 -53385669 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1341 1111 104 43 21 chr5 99151595 99151781 -53385478 - B2_Mm2 SINE B2 -5 190 1 1 1341 243 0 0 0 chr5 99152413 99152440 -53384819 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1341 28 0 0 0 chr5 99152637 99152665 -53384594 + AT_rich Low_complexity Low_complexity 1 28 0 1 1341 217 273 18 0 chr5 99153228 99153283 -53383976 - MIRc SINE MIR -52 216 161 1 1341 541 392 34 50 chr5 99153879 99154319 -53382940 + MLT1D LTR MaLR 65 497 -8 1 1341 183 287 52 31 chr5 99155037 99155134 -53382125 + MER5A DNA MER1_type 53 151 -38 2 1341 261 0 0 0 chr5 99155378 99155407 -53381852 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1341 312 331 53 8 chr5 99155565 99155696 -53381563 - L2a LINE L2 0 3426 3290 2 1341 301 276 114 0 chr5 99155889 99156012 -53381247 + B1F SINE Alu 4 140 -9 2 1341 240 376 63 8 chr5 99156321 99156447 -53380812 - L2a LINE L2 -1105 2314 2182 2 1341 191 125 0 24 chr5 99156927 99156968 -53380291 + (ATG)n Simple_repeat Simple_repeat 1 40 0 2 1341 6345 200 49 19 chr5 99156969 99157102 -53380157 - Lx5 LINE L1 -5 7045 6885 2 1341 531 13 26 13 chr5 99157102 99157179 -53380080 + (TAAA)n Simple_repeat Simple_repeat 1 78 0 2 1341 6612 166 35 16 chr5 99157179 99159353 -53377906 - Lx5 LINE L1 -166 6884 4683 2 1341 214 299 11 22 chr5 99160150 99160239 -53377020 + (TG)n Simple_repeat Simple_repeat 1 88 0 2 1341 387 272 32 3 chr5 99160345 99160468 -53376791 - B4A SINE B4 -89 135 2 2 1341 911 34 26 0 chr5 99160793 99160910 -53376349 + B1_Mm SINE Alu 27 146 -1 2 1341 396 0 0 0 chr5 99161667 99161711 -53375548 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1341 234 0 0 0 chr5 99162596 99162622 -53374637 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2 1341 240 326 93 5 chr5 99162622 99162816 -53374443 + L1MB8 LINE L1 5913 6123 -55 2 1341 1130 233 48 16 chr5 99163014 99163324 -53373935 - Lx3C LINE L1 -11 6965 6646 2 1341 469 131 0 0 chr5 99163319 99163403 -53373856 + L1_Mur1 LINE L1 3911 3994 -1892 2 1341 29 28 0 0 chr5 99163568 99163604 -53373655 + AT_rich Low_complexity Low_complexity 1 36 0 2 1341 236 378 11 0 chr5 99163824 99163914 -53373345 - MIRb SINE MIR -132 136 46 2 1341 420 71 0 0 chr5 99164673 99164729 -53372530 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1341 341 164 14 0 chr5 99164736 99164809 -53372450 + GA-rich Low_complexity Low_complexity 1 74 0 2 1341 185 326 41 21 chr5 99166136 99166233 -53371026 + MIR SINE MIR 31 129 -133 2 1341 463 284 270 22 chr5 99166945 99167366 -53369893 + L1MA6 LINE L1 5638 6162 -138 2 1341 280 325 124 40 chr5 99167458 99167660 -53369599 + B4A SINE B4 72 290 -2 2 1341 21 36 0 0 chr5 99168011 99168039 -53369220 + AT_rich Low_complexity Low_complexity 1 28 0 2 1341 24 0 0 0 chr5 99168106 99168130 -53369129 + AT_rich Low_complexity Low_complexity 1 24 0 2 1341 2579 127 71 9 chr5 99168139 99168577 -53368682 - Lx3B LINE L1 -4 6969 6505 2 1341 631 60 0 0 chr5 99168577 99168660 -53368599 - Lx3B LINE L1 -1101 5875 5793 2 1341 295 338 22 22 chr5 99169068 99169207 -53368052 - MIRb SINE MIR -42 226 88 2 1341 621 61 0 0 chr5 99169723 99169805 -53367454 + (TC)n Simple_repeat Simple_repeat 2 83 0 2 1341 459 0 0 0 chr5 99170181 99170232 -53367027 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1341 660 180 114 30 chr5 99170232 99170364 -53366895 - B1_Mur3 SINE Alu -6 143 1 2 1341 778 64 0 0 chr5 99173861 99173970 -53363289 + L1_Mus1 LINE L1 6459 6567 0 2 1341 284 278 102 34 chr5 99174146 99174440 -53362819 + L1MA9 LINE L1 998 1311 -4830 2 1341 202 29 0 54 chr5 99175105 99175142 -53362117 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1341 492 240 65 92 chr5 99175224 99175465 -53361794 + L1MA9 LINE L1 2715 2946 -3258 2 1341 180 0 0 0 chr5 99175465 99175485 -53361774 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2 1341 492 240 65 92 chr5 99175485 99175537 -53361722 + L1MA9 LINE L1 2947 3000 -3204 2 1341 1181 290 61 20 chr5 99175773 99176663 -53360596 + L1MA9 LINE L1 3341 4293 -1914 2 1341 2519 149 10 0 chr5 99176706 99177096 -53360163 + ORR1B1 LTR MaLR 1 394 0 2 1341 24 32 0 0 chr5 99177196 99177227 -53360032 + AT_rich Low_complexity Low_complexity 1 31 0 2 1341 381 304 123 12 chr5 99177236 99177399 -53359860 - B3A SINE B2 -17 181 1 2 1341 971 252 38 4 chr5 99177399 99177621 -53359638 - B4A SINE B4 -61 231 2 2 1341 534 225 108 51 chr5 99177625 99177939 -53359320 + L1MA9 LINE L1 4276 4607 -1597 2 1341 236 239 60 0 chr5 99177969 99178036 -53359223 - MTE2a LTR MaLR -14 365 295 2 1341 544 246 56 40 chr5 99178130 99178336 -53358923 - MTE2a LTR MaLR -136 283 58 2 1341 226 259 0 0 chr5 99178380 99178438 -53358821 + L1MA9 LINE L1 4715 4772 -1435 2 1341 1270 287 113 26 chr5 99178570 99179816 -53357443 + L1MA9 LINE L1 4860 6229 -147 2 1341 707 168 0 0 chr5 99181320 99181427 -53355832 + B1_Mur3 SINE Alu 14 120 -29 2 1341 1169 249 3 14 chr5 99181552 99181902 -53355357 + Lx9 LINE L1 7005 7350 -294 2 1341 180 77 0 0 chr5 99182226 99182252 -53355007 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1341 209 296 28 14 chr5 99182794 99182866 -53354393 + L2b LINE L2 3300 3372 -3 2 1341 237 33 0 0 chr5 99183003 99183033 -53354226 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1341 702 257 29 0 chr5 99184001 99184176 -53353083 - B3A SINE B2 -18 180 1 2 1341 425 103 0 14 chr5 99185405 99185474 -53351785 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1341 1620 18 0 0 chr5 99186221 99186561 -53350698 + (CA)n Simple_repeat Simple_repeat 1 340 0 2 1341 9283 44 3 2 chr5 99186704 99188614 -53348645 - L1Md_F3 LINE L1 -17 6567 4657 2 1341 1199 232 92 3 chr5 99188683 99189011 -53348248 - Lx5 LINE L1 -8 7042 6686 2 1341 24 0 0 0 chr5 99190193 99190217 -53347042 + AT_rich Low_complexity Low_complexity 1 24 0 2 1341 29 47 0 0 chr5 99191930 99191973 -53345286 + AT_rich Low_complexity Low_complexity 1 43 0 2 1341 21 57 0 0 chr5 99192118 99192153 -53345106 + AT_rich Low_complexity Low_complexity 1 35 0 2 1341 228 135 0 0 chr5 99192153 99192190 -53345069 + (CTA)n Simple_repeat Simple_repeat 2 38 0 2 1341 519 277 0 58 chr5 99192191 99192329 -53344930 - RSINE1 SINE B4 0 165 36 2 1341 468 0 0 0 chr5 99192652 99192704 -53344555 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1341 476 317 111 4 chr5 99192721 99193127 -53344132 - L1MA6 LINE L1 -278 6022 5571 2 1341 342 0 0 0 chr5 99195336 99195374 -53341885 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 2 1341 388 305 46 0 chr5 99195374 99195505 -53341754 - B1F2 SINE Alu -12 137 1 2 1341 296 369 114 22 chr5 99195643 99195967 -53341292 - L2c LINE L2 -60 3327 2974 2 1341 245 170 151 0 chr5 99196530 99196583 -53340676 + B4A SINE B4 47 107 -185 2 1341 369 207 0 0 chr5 99196583 99196665 -53340594 + (CA)n Simple_repeat Simple_repeat 2 83 0 2 1341 475 305 65 26 chr5 99196675 99196830 -53340429 + B4A SINE B4 130 290 -2 2 1341 303 91 0 0 chr5 99196840 99196856 -53340403 + HAL1-3A_ME LINE L1 1979 1994 -864 2 1341 495 0 0 0 chr5 99196856 99196911 -53340348 + (TC)n Simple_repeat Simple_repeat 1 55 0 2 1341 303 91 0 0 chr5 99196911 99196938 -53340321 + HAL1-3A_ME LINE L1 1995 2021 -837 2 1341 851 298 54 17 chr5 99199429 99199723 -53337536 - ORR1E LTR MaLR -42 317 13 2 1341 320 347 45 71 chr5 99202235 99202390 -53334869 + RSINE1 SINE B4 11 161 -4 2 1341 768 289 24 4 chr5 99202490 99202737 -53334522 - Lx7 LINE L1 -1305 6391 6140 2 1341 7133 202 40 28 chr5 99202763 99205071 -53332188 - Lx6 LINE L1 0 7460 5115 2 1341 3859 195 50 20 chr5 99205065 99206019 -53331240 - L1_Mur3 LINE L1 -341 5539 4557 2 1341 266 338 66 29 chr5 99206225 99206362 -53330897 + MIRb SINE MIR 20 161 -107 2 1341 771 204 27 11 chr5 99206408 99206591 -53330668 - Lx9 LINE L1 -441 7203 7018 2 1341 1614 32 0 11 chr5 99206647 99206837 -53330422 - B2_Mm1a SINE B2 -5 188 1 2 1341 231 114 0 0 chr5 99207364 99207399 -53329860 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 2 1341 201 339 66 33 chr5 99207795 99207978 -53329281 + L2 LINE L2 2416 2604 -815 2 1341 268 200 24 36 chr5 99208959 99209042 -53328217 - B3 SINE B2 0 216 135 2 1341 30 77 0 0 chr5 99209606 99209671 -53327588 + AT_rich Low_complexity Low_complexity 1 65 0 2 1341 185 97 32 0 chr5 99210167 99210198 -53327061 + L4 LINE RTE 891 922 -1107 2 1341 1460 168 95 70 chr5 99211854 99212212 -53325047 - ORR1B2 LTR MaLR 0 367 1 2 1341 436 311 44 0 chr5 99212397 99212532 -53324727 + B3A SINE B2 2 142 -56 2 1341 225 0 0 0 chr5 99212600 99212625 -53324634 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1341 242 157 27 67 chr5 99213722 99213797 -53323462 + GA-rich Low_complexity Low_complexity 5 76 0 2 1341 195 100 0 0 chr5 99214004 99214034 -53323225 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1341 1187 68 0 0 chr5 99214034 99214181 -53323078 - B1_Mus1 SINE Alu 0 148 2 2 1341 323 213 22 7 chr5 99214218 99214355 -53322904 + (TA)n Simple_repeat Simple_repeat 1 139 0 2 1341 449 308 31 0 chr5 99214386 99214516 -53322743 + B1F SINE Alu 13 146 -3 2 1341 726 268 80 69 chr5 99217317 99217606 -53319653 + B4A SINE B4 1 292 0 2 1341 37 62 0 0 chr5 99219730 99219795 -53317464 + AT_rich Low_complexity Low_complexity 1 65 0 2 1341 207 0 0 0 chr5 99219917 99219940 -53317319 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2 1341 378 0 0 0 chr5 99221370 99221412 -53315847 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 167 735 52 0 0 chr5 99221412 99221509 -53315750 - L1_Mus1 LINE L1 -9 6558 6462 2 1342 565 311 78 51 chr5 99221760 99222213 -53315046 + RMER20B LTR ERVK 1 477 -39 2 1342 1821 210 72 13 chr5 99222270 99222647 -53314612 - Lx5 LINE L1 -217 6833 6435 2 1342 2120 308 83 11 chr5 99222643 99223399 -53313860 - Lx8 LINE L1 -457 7016 6206 2 1342 768 178 0 16 chr5 99223400 99223583 -53313676 + CT-rich Low_complexity Low_complexity 1 180 0 2 1342 1187 243 166 58 chr5 99223618 99224202 -53313057 - L1_Mur3 LINE L1 -138 5742 5123 2 1342 3984 47 8 11 chr5 99224223 99224695 -53312564 - L1_Mus1 LINE L1 0 6567 6097 2 1342 4242 62 1 0 chr5 99224695 99225436 -53311823 + L1_Mus1 LINE L1 5335 6076 -491 2 1342 416 244 135 34 chr5 99225536 99225744 -53311515 - Lx7 LINE L1 0 7696 7468 2 1342 233 0 62 0 chr5 99225794 99225826 -53311433 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2 1342 561 234 39 0 chr5 99225826 99225954 -53311305 + Lx7 LINE L1 7548 7680 -16 2 1342 442 198 28 47 chr5 99226191 99226204 -53311055 - PB1D9 SINE Alu 0 120 110 2 1342 351 0 0 0 chr5 99226204 99226243 -53311016 + (TTG)n Simple_repeat Simple_repeat 2 40 0 2 1342 442 187 62 54 chr5 99226243 99226345 -53310914 - PB1D9 SINE Alu -11 109 6 2 1342 478 258 11 119 chr5 99226389 99226530 -53310729 - MER31-int LTR ERV1 -834 4102 3978 3 1342 1392 17 0 32 chr5 99226530 99226716 -53310543 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 3 1342 478 258 11 119 chr5 99226716 99226759 -53310500 - MER31-int LTR ERV1 -959 3977 3938 3 1342 603 0 0 0 chr5 99226824 99226891 -53310368 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1342 307 252 114 32 chr5 99227143 99227266 -53309993 + B1_Mur3 SINE Alu 8 140 -9 3 1342 549 0 0 0 chr5 99227399 99227460 -53309799 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 3 1342 26 30 0 0 chr5 99227902 99227935 -53309324 + AT_rich Low_complexity Low_complexity 1 33 0 3 1342 333 0 0 0 chr5 99228569 99228606 -53308653 + (TAA)n Simple_repeat Simple_repeat 2 38 0 3 1342 24 32 0 0 chr5 99228681 99228712 -53308547 + AT_rich Low_complexity Low_complexity 1 31 0 3 1342 375 273 122 28 chr5 99229525 99229706 -53307553 - LTR37A LTR ERV1 -2 424 227 3 1342 432 0 0 0 chr5 99231157 99231205 -53306054 + (TC)n Simple_repeat Simple_repeat 1 48 0 3 1342 689 288 172 56 chr5 99231924 99232091 -53305168 + MTEb LTR MaLR 2 156 -223 3 1342 279 0 0 0 chr5 99232091 99232122 -53305137 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1342 423 0 0 0 chr5 99232122 99232168 -53305091 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1342 689 288 172 56 chr5 99232168 99232337 -53304922 + MTEb LTR MaLR 157 377 -2 3 1342 2988 63 65 5 chr5 99232343 99232727 -53304532 - MTB_Mm LTR MaLR 0 407 1 3 1342 306 252 97 21 chr5 99232868 99232998 -53304261 + L1MC4 LINE L1 6726 6899 -1143 3 1342 353 225 57 16 chr5 99233328 99233450 -53303809 + L1MC4 LINE L1 7475 7601 -441 3 1342 3610 140 44 10 chr5 99233453 99234038 -53303221 + RLTR17 LTR ERVK 88 692 0 3 1342 238 299 13 25 chr5 99234109 99234188 -53303071 - ID2 SINE ID -5 78 1 3 1342 31 96 0 0 chr5 99234252 99234346 -53302913 + AT_rich Low_complexity Low_complexity 1 94 0 3 1342 860 19 9 0 chr5 99234982 99235089 -53302170 - B2_Mm1t SINE B2 -5 188 81 3 1342 304 226 65 53 chr5 99235325 99235498 -53301761 - MLT1B LTR MaLR -14 376 172 3 1342 506 43 14 0 chr5 99236747 99236816 -53300443 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1342 299 274 51 34 chr5 99239194 99239311 -53297948 - L1MC2 LINE L1 -7 6337 6219 3 1342 299 206 58 19 chr5 99239895 99239999 -53297260 - Lx9 LINE L1 -27 7617 7510 3 1342 1472 172 22 74 chr5 99241919 99242185 -53295074 + ORR1C2 LTR MaLR 1 245 -149 3 1342 207 100 0 0 chr5 99242185 99242215 -53295044 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 3 1342 3194 51 0 0 chr5 99242215 99242567 -53294692 + IAPEY2_LTR LTR ERVK 3 354 -3 3 1342 1472 155 20 57 chr5 99242567 99242725 -53294534 + ORR1C2 LTR MaLR 235 383 -1 3 1342 1498 298 148 16 chr5 99242904 99243720 -53293539 + L1_Mur3 LINE L1 2120 3043 -2837 3 1342 1161 279 24 10 chr5 99243724 99244017 -53293242 - MTD LTR MaLR -122 297 1 3 1342 929 236 19 158 chr5 99244017 99244480 -53292779 - MTD-int LTR MaLR 0 1258 860 3 1342 559 293 34 38 chr5 99244481 99244772 -53292487 + L1_Mur3 LINE L1 3145 3434 -2446 3 1342 756 279 109 40 chr5 99244824 99245273 -53291986 + L1M2 LINE L1 4237 4716 -1427 3 1342 2310 189 77 70 chr5 99245273 99246037 -53291222 + RMER19B LTR ERVK 10 890 -12 3 1342 263 274 30 40 chr5 99246041 99246140 -53291119 + L1_Mur3 LINE L1 4693 4790 -1090 3 1342 329 161 0 0 chr5 99246218 99246280 -53290979 - Lx6 LINE L1 -26 7434 7373 3 1342 206 219 0 0 chr5 99246319 99246360 -53290899 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1342 737 50 20 0 chr5 99246400 99246501 -53290758 + (GAAA)n Simple_repeat Simple_repeat 4 106 0 3 1342 190 0 67 0 chr5 99246756 99246786 -53290473 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 3 1342 516 324 7 47 chr5 99246823 99246972 -53290287 + RSINE1 SINE B4 2 144 -21 3 1342 230 305 0 0 chr5 99246989 99247048 -53290211 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1342 1285 191 63 40 chr5 99247164 99247415 -53289844 + RMER17C LTR ERVK 1 385 -424 3 1342 441 0 0 0 chr5 99247415 99247464 -53289795 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1342 1285 173 75 25 chr5 99247464 99247620 -53289639 + RMER17C LTR ERVK 219 378 -32 3 1342 462 18 0 0 chr5 99249348 99249403 -53287856 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1342 315 121 0 0 chr5 99249403 99249461 -53287798 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 1342 22 0 0 0 chr5 99249480 99249502 -53287757 + AT_rich Low_complexity Low_complexity 1 22 0 3 1342 1633 106 9 0 chr5 99249909 99250135 -53287124 - Lx2 LINE L1 0 6997 6770 3 1342 2141 96 0 3 chr5 99250135 99250429 -53286830 - Lx2 LINE L1 -374 6623 6331 3 1342 21 0 0 0 chr5 99250748 99250769 -53286490 + AT_rich Low_complexity Low_complexity 1 21 0 3 1342 333 0 0 0 chr5 99251401 99251438 -53285821 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1342 276 77 0 0 chr5 99252005 99252044 -53285215 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1342 399 216 43 51 chr5 99252930 99253023 -53284236 + PB1D9 SINE Alu 5 96 -24 3 1342 261 0 0 0 chr5 99253023 99253052 -53284207 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 3 1342 399 216 43 51 chr5 99253052 99253075 -53284184 + PB1D9 SINE Alu 97 120 0 3 1342 225 0 0 0 chr5 99253776 99253801 -53283458 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1342 450 0 0 0 chr5 99253803 99253853 -53283406 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1342 294 164 0 0 chr5 99254010 99254065 -53283194 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 1342 278 282 0 56 chr5 99254938 99255028 -53282231 + MT2B LTR ERVL 173 257 -344 3 1342 579 184 0 0 chr5 99254961 99255059 -53282200 + B1_Mur1 SINE Alu 38 135 -14 3 1342 360 64 0 0 chr5 99255061 99255108 -53282151 + (GGA)n Simple_repeat Simple_repeat 3 49 0 3 1342 495 0 0 0 chr5 99255116 99255171 -53282088 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 3 1342 284 296 0 14 chr5 99255393 99255465 -53281794 - ID4_ SINE ID -11 72 2 3 1342 238 286 10 71 chr5 99255595 99255693 -53281566 - RSINE1 SINE B4 -13 152 61 3 1342 1026 141 68 0 chr5 99255694 99255871 -53281388 + Lx LINE L1 6460 6648 -6 3 1342 336 83 0 0 chr5 99255874 99255922 -53281337 + (GGGA)n Simple_repeat Simple_repeat 4 51 0 3 1342 771 42 0 0 chr5 99255922 99256017 -53281242 + (GAAA)n Simple_repeat Simple_repeat 3 97 0 3 1342 212 337 7 20 chr5 99257173 99257282 -53279977 - MIRc SINE MIR -114 154 44 3 1342 468 0 0 0 chr5 99257414 99257466 -53279793 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1342 328 290 11 22 chr5 99258028 99258172 -53279087 - MIR SINE MIR -22 240 107 3 1342 208 147 0 0 chr5 99258951 99258985 -53278274 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 3 1342 844 77 0 15 chr5 99259381 99259392 -53277867 + (GGA)n Simple_repeat Simple_repeat 3 13 0 3 1342 1131 94 0 0 chr5 99259392 99259572 -53277687 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1342 844 77 0 15 chr5 99259572 99259625 -53277634 + (GGA)n Simple_repeat Simple_repeat 2 52 0 3 1342 1311 39 0 17 chr5 99259625 99259806 -53277453 + (GAA)n Simple_repeat Simple_repeat 2 179 0 3 1342 844 77 0 15 chr5 99259806 99259872 -53277387 + (GGA)n Simple_repeat Simple_repeat 2 67 0 3 1342 286 295 27 54 chr5 99260714 99260825 -53276434 - MLT1B LTR MaLR -35 355 248 3 1342 31 44 0 0 chr5 99261290 99261335 -53275924 + AT_rich Low_complexity Low_complexity 1 45 0 3 1342 470 17 17 0 chr5 99261769 99261828 -53275431 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1342 288 0 0 0 chr5 99262724 99262756 -53274503 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1342 201 175 0 0 chr5 99263280 99263320 -53273939 + A-rich Low_complexity Low_complexity 1 40 0 3 1342 294 98 0 0 chr5 99263862 99263913 -53273346 + (GCTG)n Simple_repeat Simple_repeat 4 54 0 3 1342 876 56 10 78 chr5 99263916 99264109 -53273150 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 1342 441 0 0 0 chr5 99264654 99264703 -53272556 + (TAA)n Simple_repeat Simple_repeat 3 51 0 3 1342 726 166 0 0 chr5 99265418 99265739 -53271520 + GA-rich Low_complexity Low_complexity 1 321 0 3 1342 776 238 46 46 chr5 99265905 99266121 -53271138 + B3 SINE B2 1 216 0 3 1342 972 233 0 53 chr5 99266227 99266454 -53270805 - B3 SINE B2 -1 215 1 3 1342 1186 287 75 34 chr5 99267143 99267529 -53269730 + MER82 DNA MER2_type 2 403 -250 3 1342 290 397 27 7 chr5 99267578 99267725 -53269534 + MER82 DNA MER2_type 494 643 -10 3 1342 186 389 35 17 chr5 99267869 99267984 -53269275 + MIRm SINE MIR 11 127 -149 3 1342 913 291 46 25 chr5 99268561 99268846 -53268413 - B4A SINE B4 0 292 2 3 1342 1119 136 0 0 chr5 99268905 99269052 -53268207 - B1_Mur4 SINE Alu -3 147 1 3 1342 418 303 96 112 chr5 99269536 99269848 -53267411 + MLT2C2 LTR ERVL 22 328 -136 3 1342 383 255 5 0 chr5 99269848 99270062 -53267197 + GA-rich Low_complexity Low_complexity 1 215 0 3 1342 220 135 57 19 chr5 99270270 99270323 -53266936 + T-rich Low_complexity Low_complexity 2 56 0 3 1342 297 0 0 0 chr5 99270401 99270434 -53266825 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1342 432 118 0 0 chr5 99270434 99270501 -53266758 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 1342 450 0 0 0 chr5 99270775 99270825 -53266434 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1342 412 149 28 0 chr5 99274793 99274900 -53262359 + (CAGA)n Simple_repeat Simple_repeat 3 112 0 3 1342 249 283 50 0 chr5 99276975 99277035 -53260224 + B2_Mm2 SINE B2 1 63 -132 3 1342 721 287 102 94 chr5 99278277 99278377 -53258882 + MLT1E3 LTR MaLR 140 214 -410 3 1342 217 51 51 0 chr5 99278377 99278416 -53258843 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 1342 721 287 102 94 chr5 99278416 99278795 -53258464 + MLT1E3 LTR MaLR 215 623 -1 3 1342 207 0 0 0 chr5 99279434 99279457 -53257802 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1342 288 282 116 34 chr5 99279739 99279886 -53257373 - RMER15 LTR ERVL -46 529 371 3 1342 423 0 0 0 chr5 99280143 99280190 -53257069 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1342 690 232 0 0 chr5 99280409 99280551 -53256708 + B1_Mur3 SINE Alu 5 146 -3 3 1342 378 0 0 0 chr5 99281307 99281349 -53255910 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1342 315 49 0 0 chr5 99281480 99281521 -53255738 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1342 216 237 16 33 chr5 99282519 99282580 -53254679 + MIR SINE MIR 21 80 -182 3 1342 332 272 11 11 chr5 99282673 99282766 -53254493 + PB1D10 SINE Alu 12 104 -13 4 1342 205 234 0 72 chr5 99283367 99283450 -53253809 + C-rich Low_complexity Low_complexity 6 82 0 4 1342 239 185 0 24 chr5 99283606 99283689 -53253570 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 4 1342 428 0 19 0 chr5 99283690 99283742 -53253517 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1342 198 0 0 0 chr5 99286341 99286363 -53250896 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1342 387 105 0 0 chr5 99287729 99287786 -53249473 + (TTG)n Simple_repeat Simple_repeat 2 58 0 4 1342 24 0 0 0 chr5 99288102 99288126 -53249133 + AT_rich Low_complexity Low_complexity 1 24 0 4 1342 615 200 0 32 chr5 99290616 99290802 -53246457 + (CATA)n Simple_repeat Simple_repeat 1 180 0 4 1342 1026 95 7 0 chr5 99292528 99292665 -53244594 + B1_Mus2 SINE Alu 1 138 -9 4 1342 234 0 0 0 chr5 99293203 99293229 -53244030 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1342 319 228 80 109 chr5 99293540 99293678 -53243581 + B3A SINE B2 1 134 -64 4 1342 737 302 93 79 chr5 99293684 99294200 -53243059 + Lx9 LINE L1 6965 7499 -145 4 1342 450 0 0 0 chr5 99294200 99294250 -53243009 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1342 737 302 93 79 chr5 99294250 99294296 -53242963 + Lx9 LINE L1 7500 7534 -110 4 1342 1979 170 61 82 chr5 99294296 99294626 -53242633 - MTC LTR MaLR 0 421 99 4 1342 1281 20 0 0 chr5 99294626 99294772 -53242487 - B1_Mm SINE Alu -1 146 1 4 1342 1979 170 61 82 chr5 99294772 99294869 -53242390 - MTC LTR MaLR -323 98 4 4 1342 737 302 93 79 chr5 99294869 99294963 -53242296 + Lx9 LINE L1 7535 7631 -13 4 1342 624 243 132 6 chr5 99294977 99295159 -53242100 + B3 SINE B2 6 210 -6 4 1342 180 0 0 0 chr5 99295479 99295499 -53241760 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1342 306 315 93 16 chr5 99295753 99295882 -53241377 + B1F SINE Alu 6 144 -5 4 1342 4660 64 53 8 chr5 99298578 99299205 -53238054 - Lx3_Mus LINE L1 -8 7001 6347 4 1342 1002 156 194 0 chr5 99299324 99299504 -53237755 + B3 SINE B2 2 216 0 4 1342 326 217 0 32 chr5 99299507 99299602 -53237657 - Lx9 LINE L1 -3 7641 7550 4 1342 551 326 54 54 chr5 99299603 99300011 -53237248 - L1MB5 LINE L1 -10 6164 5757 4 1342 534 288 81 99 chr5 99300203 99301007 -53236252 - L1MB5 LINE L1 -423 5760 4962 4 1342 740 197 0 0 chr5 99303125 99303257 -53234002 + B2_Mm2 SINE B2 8 139 -56 4 1342 423 68 0 0 chr5 99303266 99303325 -53233934 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1342 252 190 0 0 chr5 99303348 99303427 -53233832 + CT-rich Low_complexity Low_complexity 2 80 0 4 1342 292 299 69 30 chr5 99304123 99304254 -53233005 - MER5A1 DNA MER1_type -30 136 1 4 1342 612 40 0 0 chr5 99306360 99306435 -53230824 + (GA)n Simple_repeat Simple_repeat 1 75 0 4 1342 209 293 106 0 chr5 99308443 99308566 -53228693 + MIRc SINE MIR 50 192 -76 4 1342 452 245 151 0 chr5 99310161 99310267 -53226992 + RSINE1 SINE B4 4 125 -40 4 1342 324 0 0 0 chr5 99310268 99310304 -53226955 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1342 372 22 0 0 chr5 99311709 99311754 -53225505 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1342 216 149 0 0 chr5 99311763 99311810 -53225449 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 4 1342 261 0 0 0 chr5 99311837 99311866 -53225393 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 4 1342 1005 222 13 47 chr5 99311890 99312126 -53225133 - Lx7 LINE L1 -365 7331 7104 4 1342 931 54 132 0 chr5 99313818 99313947 -53223312 + B1_Mus2 SINE Alu 2 147 0 4 1342 444 153 0 0 chr5 99313998 99314083 -53223176 + GA-rich Low_complexity Low_complexity 1 85 0 4 1342 1419 269 106 16 chr5 99314083 99314252 -53223007 + L1_Mur3 LINE L1 5271 5442 -438 4 1342 690 13 0 0 chr5 99314252 99314331 -53222928 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 4 1342 1419 269 106 16 chr5 99314331 99314717 -53222542 + L1_Mur3 LINE L1 5443 5875 -5 4 1342 3409 38 3 0 chr5 99314745 99315137 -53222122 + MTA_Mm LTR MaLR 1 393 -3 4 1342 8928 46 10 1 chr5 99315139 99316224 -53221035 + MTA_Mm-int LTR MaLR 1 1095 -3 4 1342 2189 55 3 0 chr5 99316224 99316514 -53220745 + MTA_Mm LTR MaLR 106 396 0 4 1342 943 87 34 0 chr5 99316557 99316706 -53220553 - L1_Mus3 LINE L1 -7 6631 6478 4 1342 3889 94 4 0 chr5 99316706 99317246 -53220013 + L1_Mm LINE L1 4919 5460 -423 4 1342 457 76 43 11 chr5 99317469 99317562 -53219697 + (TA)n Simple_repeat Simple_repeat 2 97 0 4 1342 426 146 0 0 chr5 99317713 99317795 -53219464 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1342 2648 299 56 39 chr5 99317813 99318879 -53218380 + Lx8 LINE L1 6197 7281 -192 4 1342 342 0 0 0 chr5 99319573 99319611 -53217648 + (GA)n Simple_repeat Simple_repeat 1 38 0 4 1342 364 331 32 19 chr5 99319666 99319823 -53217436 + MIR SINE MIR 52 210 -52 4 1342 849 20 0 0 chr5 99320016 99320115 -53217144 + (TC)n Simple_repeat Simple_repeat 2 100 0 4 1342 677 202 144 46 chr5 99321675 99322004 -53215255 - RMER6B LTR ERVK 0 461 23 4 1342 22 0 0 0 chr5 99322025 99322047 -53215212 + AT_rich Low_complexity Low_complexity 1 22 0 4 1342 1163 107 6 0 chr5 99322082 99322260 -53214999 + (TTC)n Simple_repeat Simple_repeat 2 180 0 4 1342 1048 86 0 41 chr5 99322261 99322407 -53214852 - B1_Mus1 SINE Alu -4 144 5 4 1342 366 301 19 0 chr5 99322783 99322886 -53214373 + B1F2 SINE Alu 16 120 -29 4 1342 312 206 44 0 chr5 99322989 99323057 -53214202 + ID_B1 SINE B4 147 217 -7 4 1342 21 57 0 0 chr5 99323598 99323633 -53213626 + AT_rich Low_complexity Low_complexity 1 35 0 4 1342 465 19 0 0 chr5 99324480 99324534 -53212725 + (ATATG)n Simple_repeat Simple_repeat 1 54 0 4 1342 1311 298 57 57 chr5 99324790 99324878 -53212381 + L1_Rod LINE L1 4933 5009 -838 4 1342 1817 146 23 61 chr5 99324878 99325220 -53212039 - ORR1A4 LTR MaLR 0 329 1 4 1342 1311 298 57 57 chr5 99325220 99325992 -53211267 + L1_Rod LINE L1 5010 5792 -55 4 1342 254 299 50 40 chr5 99327351 99327452 -53209807 - L2c LINE L2 -9 3378 3277 4 1342 1445 67 0 6 chr5 99329257 99329438 -53207821 - B2_Mm2 SINE B2 -14 181 2 4 1342 2018 89 0 0 chr5 99329471 99329753 -53207506 + MusHAL1 LINE L1 286 567 -2145 4 1342 354 329 136 11 chr5 99329913 99330199 -53207060 - Lx9 LINE L1 -151 7493 7172 4 1342 477 0 0 0 chr5 99330516 99330569 -53206690 + (TTG)n Simple_repeat Simple_repeat 2 54 0 4 1342 1030 64 0 0 chr5 99330572 99330712 -53206547 - B1_Mus2 SINE Alu -6 141 2 4 1342 892 138 25 6 chr5 99332046 99332207 -53205052 + URR1B DNA MER1_type 59 222 -3 4 1342 1266 286 105 24 chr5 99332366 99333043 -53204216 - L1M3 LINE L1 -1086 5054 4323 4 1342 335 233 86 69 chr5 99333075 99333250 -53204009 - Lx7 LINE L1 -4 7692 7515 4 1342 14741 191 49 11 chr5 99333262 99335774 -53201485 - L1_Mur3 LINE L1 -1340 4540 1911 4 1342 243 0 0 0 chr5 99335774 99335801 -53201458 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 4 1342 14741 209 59 22 chr5 99335801 99337091 -53200168 - L1_Mur3 LINE L1 -3970 1910 593 4 1342 1165 269 185 35 chr5 99337113 99337855 -53199404 - L1M3 LINE L1 -1816 4327 3475 4 1342 1104 268 123 5 chr5 99337857 99338228 -53199031 - MTD LTR MaLR -14 405 1 4 1342 543 219 128 15 chr5 99338242 99338446 -53198813 - L1M3 LINE L1 -2677 3466 3240 4 1342 38900 29 0 0 chr5 99338413 99344953 -53192306 - L1Md_T LINE L1 0 6585 1 4 1342 265 232 163 34 chr5 99344984 99345131 -53192128 + L1M2 LINE L1 5285 5450 -862 4 1342 663 288 60 19 chr5 99345597 99345813 -53191446 + ORR1E LTR MaLR 11 235 -124 4 1342 206 216 0 0 chr5 99346167 99346204 -53191055 + C-rich Low_complexity Low_complexity 6 42 0 4 1342 2175 213 61 16 chr5 99346211 99346702 -53190557 + RMER5 LTR ERV1 1 513 -21 4 1342 1402 330 162 50 chr5 99346888 99347317 -53189942 + MTE-int LTR MaLR 5 487 -1093 4 1342 216 0 0 0 chr5 99347317 99347341 -53189918 + (GA)n Simple_repeat Simple_repeat 1 24 0 4 1342 1402 330 162 50 chr5 99347341 99347824 -53189435 + MTE-int LTR MaLR 488 1018 -562 4 1342 4139 144 46 37 chr5 99347825 99348200 -53189059 + RLTR25B LTR ERVK 1 386 -642 4 1342 240 0 0 70 chr5 99348200 99348243 -53189016 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 4 1342 4139 144 46 37 chr5 99348243 99348633 -53188626 + RLTR25B LTR ERVK 387 773 -255 4 1342 1727 165 84 78 chr5 99348650 99349032 -53188227 + RLTR41 LTR ERV1 62 445 -1 4 1342 827 211 26 143 chr5 99349374 99349640 -53187619 + RLTR25B LTR ERVK 792 1026 -2 4 1342 2889 63 39 5 chr5 99349637 99350022 -53187237 + MTB LTR MaLR 3 400 0 4 1342 903 269 125 61 chr5 99350034 99350331 -53186928 + MTE-int LTR MaLR 909 1322 -258 4 1342 215 274 27 14 chr5 99351383 99351457 -53185802 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 4 1342 369 270 84 42 chr5 99351883 99352096 -53185163 + L1MA5A LINE L1 5790 6011 -286 4 1342 757 176 11 0 chr5 99352260 99352436 -53184823 + (TATG)n Simple_repeat Simple_repeat 1 178 0 4 1343 247 150 0 0 chr5 99354331 99354371 -53182888 + Lx9 LINE L1 7388 7427 -217 4 1343 24 32 0 0 chr5 99354516 99354547 -53182712 + AT_rich Low_complexity Low_complexity 1 31 0 4 1343 498 33 0 0 chr5 99354721 99354781 -53182478 + (TTA)n Simple_repeat Simple_repeat 2 61 0 4 1343 774 307 77 35 chr5 99355108 99355446 -53181813 + Lx8 LINE L1 6982 7333 -140 4 1343 248 217 0 0 chr5 99355446 99355506 -53181753 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1343 245 211 58 0 chr5 99356785 99356837 -53180422 - PB1D9 SINE Alu 0 120 66 4 1343 372 270 110 0 chr5 99356791 99356891 -53180368 - ID_B1 SINE B4 -6 218 108 4 1343 239 324 44 0 chr5 99357213 99357281 -53179978 - Charlie12 DNA MER1_type -2796 77 7 4 1343 437 313 70 39 chr5 99357366 99357601 -53179658 + MLT1G-int LTR MaLR 1163 1457 -32 4 1343 592 337 62 8 chr5 99357602 99357859 -53179400 + MLT1G LTR MaLR 3 273 -318 4 1343 324 0 0 0 chr5 99358594 99358630 -53178629 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1343 201 280 96 0 chr5 99358912 99359011 -53178248 - MIR3 SINE MIR -45 163 54 4 1343 315 65 0 0 chr5 99360240 99360286 -53176973 + (T)n Simple_repeat Simple_repeat 1 46 0 4 1343 241 277 151 60 chr5 99361998 99362181 -53175078 - Charlie2b DNA MER1_type -89 2693 2512 4 1343 246 128 0 0 chr5 99362181 99362220 -53175039 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1343 241 277 151 60 chr5 99362220 99362301 -53174958 - Charlie2b DNA MER1_type -271 2511 2406 4 1343 605 273 176 32 chr5 99362643 99362893 -53174366 - B4A SINE B4 -4 288 3 4 1343 1247 61 0 0 chr5 99363019 99363166 -53174093 - B1_Mm SINE Alu 0 147 1 4 1343 486 136 0 0 chr5 99363192 99363273 -53173986 + (TC)n Simple_repeat Simple_repeat 2 82 0 4 1343 741 255 22 85 chr5 99363702 99363925 -53173334 - B3 SINE B2 -6 210 2 5 1343 945 94 7 0 chr5 99363927 99364065 -53173194 - URR1B DNA MER1_type -2 223 85 5 1343 3328 64 2 19 chr5 99364065 99364570 -53172689 - L1Md_F2 LINE L1 0 6582 6142 5 1343 342 0 0 0 chr5 99365676 99365714 -53171545 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1343 195 42 0 0 chr5 99365887 99365911 -53171348 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 5 1343 407 271 120 76 chr5 99365925 99366201 -53171058 + Lx8 LINE L1 7181 7468 -5 5 1343 272 295 22 33 chr5 99366130 99366221 -53171038 + RMER1C Other Other 1248 1337 -5 5 1343 560 202 21 131 chr5 99367497 99367699 -53169560 - B3A SINE B2 0 216 1 5 1343 924 144 47 62 chr5 99367799 99367992 -53169267 - URR1A DNA MER1_type 0 226 37 5 1343 1107 83 0 0 chr5 99368002 99368158 -53169101 + (CA)n Simple_repeat Simple_repeat 2 157 0 5 1343 208 171 0 24 chr5 99368785 99368827 -53168432 + CT-rich Low_complexity Low_complexity 2 42 0 5 1343 246 62 0 0 chr5 99368924 99368956 -53168303 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 5 1343 815 227 72 11 chr5 99370840 99371117 -53166142 + MTD LTR MaLR 3 419 0 5 1343 252 0 0 0 chr5 99371259 99371287 -53165972 + (CAA)n Simple_repeat Simple_repeat 2 29 0 5 1343 1022 250 38 14 chr5 99371823 99372034 -53165225 + B3 SINE B2 1 216 0 5 1343 752 269 37 26 chr5 99372088 99372279 -53164980 + B3 SINE B2 1 193 -23 5 1343 243 0 0 0 chr5 99372769 99372796 -53164463 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1343 296 241 143 50 chr5 99373366 99373506 -53163753 + MLT1A LTR MaLR 218 370 -4 5 1343 278 341 101 22 chr5 99373507 99373645 -53163614 - L2 LINE L2 -788 2631 2483 5 1343 260 351 88 61 chr5 99373682 99373979 -53163280 + ORR1E LTR MaLR 54 358 -1 5 1343 279 297 154 32 chr5 99374032 99374317 -53162942 - L2 LINE L2 -999 2420 2101 5 1343 216 319 14 0 chr5 99375227 99375296 -53161963 + BC1_Mm scRNA scRNA 15 84 -68 5 1343 253 336 47 0 chr5 99375558 99375665 -53161594 + MIRc SINE MIR 140 251 -17 5 1343 267 31 0 0 chr5 99375689 99375721 -53161538 + (CG)n Simple_repeat Simple_repeat 1 32 0 5 1343 396 88 0 0 chr5 99375721 99375777 -53161482 + (TG)n Simple_repeat Simple_repeat 1 57 0 5 1343 672 165 19 0 chr5 99376668 99376826 -53160433 + (CA)n Simple_repeat Simple_repeat 2 162 0 5 1343 21 36 0 0 chr5 99378463 99378491 -53158768 + AT_rich Low_complexity Low_complexity 1 28 0 5 1343 241 26 53 0 chr5 99379453 99379491 -53157768 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 5 1343 282 123 0 0 chr5 99379552 99379609 -53157650 + (TTTA)n Simple_repeat Simple_repeat 2 58 0 5 1343 1451 77 27 0 chr5 99382011 99382194 -53155065 - B2_Mm2 SINE B2 -6 189 2 5 1343 227 307 10 19 chr5 99382318 99382421 -53154838 - Lx7 LINE L1 -16 7680 7579 5 1343 324 70 0 0 chr5 99382452 99382495 -53154764 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1343 753 280 96 18 chr5 99382500 99382683 -53154576 - Lx7 LINE L1 -329 7367 7176 5 1343 225 0 0 0 chr5 99382683 99382708 -53154551 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 5 1343 753 280 96 18 chr5 99382708 99382804 -53154455 - Lx7 LINE L1 -521 7175 7068 5 1343 1602 290 87 40 chr5 99383084 99384493 -53152766 - L1MC1 LINE L1 -31 6477 5011 5 1343 913 318 62 45 chr5 99384463 99385046 -53152213 - L1MC1 LINE L1 -2666 3655 3064 5 1343 1429 254 35 19 chr5 99385046 99385419 -53151840 + MTE2a LTR MaLR 1 379 0 5 1343 913 318 62 45 chr5 99385419 99385527 -53151732 - L1MC1 LINE L1 -3258 3063 2952 5 1343 1718 319 103 8 chr5 99385850 99385945 -53151314 - L1MC1 LINE L1 -5356 1152 1057 5 1343 186 43 0 0 chr5 99385945 99385968 -53151291 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1343 1718 319 103 8 chr5 99385968 99386621 -53150638 - L1MC1 LINE L1 -5452 1056 334 5 1343 348 282 28 28 chr5 99386758 99386864 -53150395 - L1MC1 LINE L1 -6393 115 10 5 1343 1503 208 109 9 chr5 99387371 99387711 -53149548 + ORR1D1 LTR MaLR 1 374 0 5 1343 1605 204 51 15 chr5 99387711 99388044 -53149215 + ORR1D1-int LTR MaLR 1 345 -1025 5 1343 3164 191 70 93 chr5 99388038 99388625 -53148634 + ORR1D1-int LTR MaLR 553 1115 -255 5 1343 1327 40 0 0 chr5 99388625 99388773 -53148486 - B1_Mus1 SINE Alu 0 148 1 5 1343 3164 191 70 93 chr5 99388773 99389022 -53148237 + ORR1D1-int LTR MaLR 1116 1370 0 5 1343 1223 194 147 14 chr5 99389023 99389316 -53147943 + ORR1D1 LTR MaLR 5 336 -38 5 1343 1538 251 127 22 chr5 99389936 99390539 -53146720 + L1_Rod LINE L1 3758 4396 -1451 5 1343 814 128 20 0 chr5 99390673 99390821 -53146438 + (CATA)n Simple_repeat Simple_repeat 2 152 0 5 1343 365 272 68 12 chr5 99391820 99392008 -53145251 - L1MEe LINE L1 -4595 1489 1283 5 1343 375 219 101 119 chr5 99392266 99392644 -53144615 - L1M5 LINE L1 -1553 4593 4223 5 1343 193 29 0 56 chr5 99392655 99392691 -53144568 + (TAAAAA)n Simple_repeat Simple_repeat 4 37 0 5 1343 257 335 70 16 chr5 99392703 99392888 -53144371 - L1MD LINE L1 -1936 4210 4016 5 1343 828 251 42 10 chr5 99395186 99395379 -53141880 + B3 SINE B2 8 206 -10 5 1343 185 376 36 9 chr5 99395862 99395972 -53141287 + MER5B DNA MER1_type 64 176 -2 5 1343 2208 133 3 6 chr5 99396949 99397274 -53139985 + ORR1A2 LTR MaLR 1 324 -3 5 1343 852 227 103 5 chr5 99397929 99398124 -53139135 + B3 SINE B2 3 216 0 5 1343 221 283 0 16 chr5 99398135 99398196 -53139063 + G-rich Low_complexity Low_complexity 4 63 0 5 1343 440 302 54 23 chr5 99398293 99398422 -53138837 + B1F1 SINE Alu 1 133 -16 5 1343 344 270 84 34 chr5 99399466 99399585 -53137674 - MER3 DNA MER1_type -5 204 80 5 1343 634 299 88 30 chr5 99402354 99402616 -53134643 - B4 SINE B4 -15 277 1 5 1343 207 100 0 0 chr5 99402625 99402655 -53134604 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1343 609 258 76 33 chr5 99404972 99405156 -53132103 + B3A SINE B2 2 193 -5 5 1343 837 70 57 3 chr5 99408076 99408399 -53128860 + (TG)n Simple_repeat Simple_repeat 1 340 0 5 1343 688 252 7 0 chr5 99408401 99408544 -53128715 - RSINE1 SINE B4 -19 146 3 5 1343 910 154 20 27 chr5 99409108 99409255 -53128004 - B1_Mur3 SINE Alu 0 149 4 5 1343 655 101 18 9 chr5 99410779 99410889 -53126370 + (TTTC)n Simple_repeat Simple_repeat 1 111 0 5 1343 1205 90 6 0 chr5 99410889 99411066 -53126193 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 5 1343 234 0 0 0 chr5 99411068 99411094 -53126165 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 5 1343 585 344 61 69 chr5 99411595 99412057 -53125202 - MLT1E3 LTR MaLR 0 624 167 5 1343 331 329 146 33 chr5 99412528 99412679 -53124580 + MLT1J1 LTR MaLR 233 400 -44 5 1343 1266 245 10 40 chr5 99413726 99414024 -53123235 + B4 SINE B4 2 290 -2 5 1343 389 20 0 20 chr5 99414111 99414162 -53123097 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1343 345 276 77 62 chr5 99414889 99415098 -53122161 - RMER10A LTR ERVL -16 426 215 5 1343 213 114 0 28 chr5 99415101 99415137 -53122122 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 5 1343 219 69 0 0 chr5 99415983 99416012 -53121247 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1343 27 29 0 0 chr5 99417373 99417407 -53119852 + AT_rich Low_complexity Low_complexity 1 34 0 5 1343 875 101 0 0 chr5 99417420 99417539 -53119720 + B1_Mm SINE Alu 27 145 -2 5 1343 443 327 0 0 chr5 99417539 99417646 -53119613 - PB1D10 SINE Alu -10 107 1 5 1343 1895 285 56 5 chr5 99418829 99419454 -53117805 - L1MA6 LINE L1 -19 6281 5625 5 1343 192 329 158 0 chr5 99419759 99419841 -53117418 + L2c LINE L2 3293 3387 0 5 1343 297 290 191 16 chr5 99420782 99420908 -53116351 + RSINE1 SINE B4 2 149 -16 5 1343 252 0 0 0 chr5 99420924 99420952 -53116307 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 5 1343 756 220 208 0 chr5 99422079 99422252 -53115007 + B3 SINE B2 3 211 -5 5 1343 1282 48 7 0 chr5 99422696 99422842 -53114417 - B1_Mus2 SINE Alu 0 147 1 5 1343 689 265 121 26 chr5 99423104 99423368 -53113891 - B4 SINE B4 -1 291 3 5 1343 248 366 24 8 chr5 99423851 99423975 -53113284 + MIR SINE MIR 129 254 -8 5 1343 205 336 66 49 chr5 99424075 99424197 -53113062 + MIR3 SINE MIR 3 126 -82 5 1343 228 35 0 0 chr5 99424555 99424584 -53112675 + (CAA)n Simple_repeat Simple_repeat 2 30 0 5 1343 261 0 0 0 chr5 99425813 99425842 -53111417 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1343 225 300 33 22 chr5 99425987 99426095 -53111164 + MIR SINE MIR 8 121 -147 5 1343 249 296 43 29 chr5 99428163 99428302 -53108957 - Lx9 LINE L1 -1742 5902 5762 5 1343 1169 151 112 27 chr5 99429376 99429634 -53107625 + Lx4A LINE L1 6778 7057 -1 5 1343 28 0 0 0 chr5 99429634 99429662 -53107597 + AT_rich Low_complexity Low_complexity 1 28 0 5 1343 606 298 99 92 chr5 99429674 99429958 -53107301 + B4A SINE B4 7 292 0 5 1343 207 0 0 0 chr5 99430233 99430256 -53107003 + (CACCC)n Simple_repeat Simple_repeat 2 24 0 5 1343 2094 198 28 2 chr5 99430414 99430810 -53106449 - MTD LTR MaLR -13 406 1 5 1343 273 200 86 0 chr5 99430854 99430924 -53106335 + L1MEg LINE L1 1259 1334 -4908 5 1343 321 350 29 10 chr5 99430952 99431056 -53106203 + RSINE1 SINE B4 58 163 -2 5 1343 491 300 125 36 chr5 99431105 99431600 -53105659 + L1MEg LINE L1 1319 1857 -4385 5 1343 24 0 0 0 chr5 99431708 99431732 -53105527 + AT_rich Low_complexity Low_complexity 1 24 0 5 1343 277 296 70 23 chr5 99432023 99432151 -53105108 + L1MEg LINE L1 2452 2585 -3561 5 1343 276 279 100 20 chr5 99432312 99432462 -53104797 + L1MEg LINE L1 2733 2894 -3252 5 1343 240 293 13 52 chr5 99432599 99432692 -53104567 + PB1D7 SINE Alu 13 102 -18 5 1343 197 167 42 0 chr5 99432767 99432815 -53104444 + GA-rich Low_complexity Low_complexity 2 51 0 5 1343 359 186 125 19 chr5 99433362 99433466 -53103793 + PB1D7 SINE Alu 1 115 -5 5 1343 1427 75 0 46 chr5 99433861 99434057 -53103202 + B2_Mm2 SINE B2 2 188 -7 5 1343 4741 172 50 24 chr5 99434386 99435547 -53101712 + Lx7 LINE L1 303 1494 -4386 5 1343 6215 179 63 22 chr5 99435522 99437151 -53100108 + Lx7 LINE L1 4618 6345 -1351 5 1343 361 203 0 0 chr5 99437151 99437225 -53100034 + Lx7 LINE L1 7386 7459 -1 5 1343 330 206 0 0 chr5 99437283 99437356 -53099903 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 1343 392 263 22 14 chr5 99437550 99437689 -53099570 - MER70-int LTR ERVL -482 4541 4402 5 1343 385 345 42 7 chr5 99437835 99437978 -53099281 - RSINE1 SINE B4 -16 149 2 5 1343 298 330 66 38 chr5 99438308 99438626 -53098633 + L1M5 LINE L1 5377 5703 -470 5 1343 956 319 14 7 chr5 99439000 99439284 -53097975 - B4A SINE B4 -2 290 5 5 1343 246 343 18 18 chr5 99439321 99439431 -53097828 + MIR SINE MIR 29 138 -124 6 1343 264 352 75 29 chr5 99440028 99440268 -53096991 + MIR SINE MIR 10 260 -2 6 1343 606 191 54 9 chr5 99440535 99440646 -53096613 + PB1D9 SINE Alu 5 120 0 6 1343 962 256 141 29 chr5 99442062 99442508 -53094751 - L1MB3 LINE L1 0 6183 5688 6 1343 626 280 112 80 chr5 99442729 99442939 -53094320 + MLT1E1A LTR MaLR 283 496 -184 6 1343 1090 178 119 0 chr5 99442939 99443141 -53094118 + URR1A DNA MER1_type 1 226 0 6 1343 626 280 112 80 chr5 99443141 99443295 -53093964 + MLT1E1A LTR MaLR 497 659 -21 6 1343 1809 142 4 181 chr5 99443315 99443813 -53093446 - RMER17C LTR ERVK 0 410 1 6 1343 1679 295 110 57 chr5 99444769 99445697 -53091562 + Lx8 LINE L1 6493 7469 -4 6 1343 263 250 33 43 chr5 99447486 99447578 -53089681 + (CATG)n Simple_repeat Simple_repeat 1 91 0 6 1343 360 0 0 0 chr5 99447586 99447626 -53089633 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1343 486 302 0 7 chr5 99449188 99449328 -53087931 - MER3 DNA MER1_type -70 139 1 6 1343 1010 92 0 0 chr5 99449662 99449804 -53087455 + B1_Mus1 SINE Alu 7 148 0 6 1343 201 154 0 0 chr5 99449804 99449843 -53087416 + A-rich Low_complexity Low_complexity 1 39 0 6 1343 309 51 0 0 chr5 99450412 99450451 -53086808 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1343 312 91 0 0 chr5 99450616 99450660 -53086599 + (A)n Simple_repeat Simple_repeat 1 44 0 6 1343 243 295 31 10 chr5 99452471 99452567 -53084692 + L1MA5 LINE L1 6200 6297 -3 6 1343 432 0 0 0 chr5 99452800 99452848 -53084411 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1343 306 0 0 0 chr5 99452848 99452881 -53084378 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1343 264 59 0 0 chr5 99454315 99454349 -53082910 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1343 296 216 122 0 chr5 99454621 99454695 -53082564 + B4A SINE B4 2 84 -208 6 1343 409 333 0 7 chr5 99454707 99454858 -53082401 + (CATA)n Simple_repeat Simple_repeat 4 153 0 6 1343 631 246 142 31 chr5 99454892 99455118 -53082141 + B4 SINE B4 2 252 -40 6 1343 264 30 0 0 chr5 99455172 99455205 -53082054 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1343 231 146 0 47 chr5 99455474 99455517 -53081742 + B2_Mm2 SINE B2 2 42 -153 6 1343 375 258 11 0 chr5 99455514 99455603 -53081656 + B3A SINE B2 87 176 -22 6 1343 397 243 4 19 chr5 99458125 99458398 -53078861 + (CA)n Simple_repeat Simple_repeat 1 268 0 6 1343 408 217 0 0 chr5 99458433 99458571 -53078688 + (CA)n Simple_repeat Simple_repeat 1 138 0 6 1343 321 47 0 0 chr5 99458573 99458616 -53078643 + (TC)n Simple_repeat Simple_repeat 1 43 0 6 1343 414 0 0 0 chr5 99458616 99458661 -53078598 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1343 371 282 126 28 chr5 99459258 99459473 -53077786 + L1MC2 LINE L1 4962 5197 -949 6 1343 984 284 57 48 chr5 99459831 99460309 -53076950 + L1MC2 LINE L1 5714 6195 -149 6 1343 716 218 45 0 chr5 99460320 99460499 -53076760 + B3A SINE B2 12 198 0 6 1343 283 237 174 10 chr5 99460530 99460628 -53076631 + L1MC3 LINE L1 7664 7777 -8 6 1343 442 309 27 50 chr5 99461268 99461489 -53075770 - Helitron3Na_Mam RC Helitron -7 479 264 6 1343 209 341 15 15 chr5 99461824 99461955 -53075304 - L2 LINE L2 -926 2493 2363 6 1343 580 190 83 112 chr5 99462328 99462606 -53074653 + Lx9 LINE L1 7372 7641 -3 6 1343 5341 189 110 9 chr5 99462893 99464367 -53072892 + Lx5 LINE L1 5402 7050 0 6 1343 202 283 23 29 chr5 99465982 99466153 -53071106 + (CCGCG)n Simple_repeat Simple_repeat 1 170 0 6 1343 319 342 0 9 chr5 99467697 99467809 -53069450 + GA-rich Low_complexity Low_complexity 2 112 0 6 1343 207 382 26 0 chr5 99467903 99467979 -53069280 - L2b LINE L2 -61 3314 3237 6 1343 419 351 109 28 chr5 99468048 99468470 -53068789 - MLT1L LTR MaLR -23 587 132 6 1343 181 343 38 9 chr5 99470410 99470516 -53066743 + L2c LINE L2 3242 3350 -37 6 1343 341 327 85 85 chr5 99470826 99471180 -53066079 + ORR1E LTR MaLR 5 358 -1 6 1343 394 340 126 28 chr5 99471584 99471974 -53065285 + LTR16D LTR ERVL 222 649 -2 6 1343 282 273 145 24 chr5 99472272 99472396 -53064863 + L1M5 LINE L1 5537 5675 -519 6 1343 246 62 0 0 chr5 99472436 99472468 -53064791 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1343 396 0 0 0 chr5 99472606 99472650 -53064609 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1343 895 229 45 5 chr5 99473585 99473783 -53063476 - B3 SINE B2 -10 206 1 6 1343 771 253 102 44 chr5 99476355 99476719 -53060540 - Charlie1b DNA MER1_type 0 523 139 6 1343 20973 161 22 13 chr5 99476838 99481330 -53055929 - Lx5 LINE L1 -383 6667 2135 6 1343 307 364 100 40 chr5 99482050 99482299 -53054960 - MLT1C LTR MaLR -4 463 200 6 1344 254 281 102 51 chr5 99484008 99484184 -53053075 - L5 LINE RTE -9 2256 2072 6 1344 525 165 0 0 chr5 99484579 99484676 -53052583 + (TAG)n Simple_repeat Simple_repeat 3 99 0 6 1344 11748 151 73 5 chr5 99484678 99487848 -53049411 - Lx3C LINE L1 -11 6965 3580 6 1344 3061 126 0 19 chr5 99487847 99488371 -53048888 + MusHAL1 LINE L1 1898 2411 -301 6 1344 21 57 0 0 chr5 99489137 99489172 -53048087 + AT_rich Low_complexity Low_complexity 1 35 0 6 1344 536 232 159 13 chr5 99490058 99490215 -53047044 - MTE2a LTR MaLR 0 379 200 6 1344 454 250 62 0 chr5 99490440 99490552 -53046707 - B3A SINE B2 -78 120 2 6 1344 307 352 150 5 chr5 99490764 99490964 -53046295 + MLT1H LTR MaLR 71 299 -250 6 1344 225 0 0 0 chr5 99491190 99491215 -53046044 + (ACTG)n Simple_repeat Simple_repeat 2 26 0 6 1344 207 186 0 0 chr5 99491215 99491258 -53046001 + CT-rich Low_complexity Low_complexity 1 43 0 6 1344 453 207 127 2 chr5 99491258 99491380 -53045879 - B1_Mur2 SINE Alu 0 147 5 6 1344 441 309 22 87 chr5 99491421 99491697 -53045562 - MLT1B LTR MaLR -132 258 1 6 1344 465 19 0 0 chr5 99492486 99492540 -53044719 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 6 1344 2400 100 158 2 chr5 99494430 99494841 -53042418 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1344 186 266 49 37 chr5 99495130 99495212 -53042047 + MIR SINE MIR 65 147 -115 6 1344 272 340 106 7 chr5 99495744 99495886 -53041373 - MIRb SINE MIR -68 200 45 6 1344 2081 114 9 12 chr5 99498995 99499332 -53037927 + ORR1A1 LTR MaLR 3 338 -8 6 1344 771 287 74 36 chr5 99499565 99499930 -53037329 + MLT1B LTR MaLR 1 379 -11 6 1344 659 229 0 6 chr5 99500580 99500756 -53036503 + (TA)n Simple_repeat Simple_repeat 2 176 0 1 1344 457 240 13 0 chr5 99500794 99500948 -53036311 + (TA)n Simple_repeat Simple_repeat 1 156 0 1 1344 317 231 0 8 chr5 99501048 99501170 -53036089 + (TA)n Simple_repeat Simple_repeat 1 121 0 2 1344 333 0 0 0 chr5 99502394 99502431 -53034828 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 3 1344 810 249 6 30 chr5 99503029 99503195 -53034064 + RSINE1 SINE B4 4 165 0 4 1344 3571 96 65 74 chr5 99504922 99505493 -53031766 + RMER2 LTR ERV1 1 566 -1 5 1344 427 335 33 42 chr5 99508180 99508392 -53028867 - MER63A DNA AcHobo 0 210 1 6 1344 303 286 26 0 chr5 99508758 99508822 -53028437 + RSINE1 SINE B4 59 124 -41 7 1344 396 0 0 0 chr5 99508822 99508866 -53028393 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1344 303 286 26 0 chr5 99508866 99508878 -53028381 + RSINE1 SINE B4 125 136 -29 7 1344 276 30 0 0 chr5 99510826 99510859 -53026400 + (TATG)n Simple_repeat Simple_repeat 4 36 0 9 1344 401 243 133 4 chr5 99511306 99511420 -53025839 + MLT1F1 LTR MaLR 191 346 -233 1 1344 1145 304 70 52 chr5 99512191 99512947 -53024312 + L1M2 LINE L1 4531 5300 -843 1 1344 690 256 61 22 chr5 99513557 99513785 -53023474 + L1M2 LINE L1 5536 5772 -528 1 1344 477 0 0 0 chr5 99513797 99513850 -53023409 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1344 693 266 54 45 chr5 99513874 99514205 -53023054 - RLTR15 LTR ERVK -16 343 10 1 1344 371 301 29 43 chr5 99514214 99514353 -53022906 + B1F1 SINE Alu 3 139 -10 1 1344 431 227 105 8 chr5 99514367 99514500 -53022759 + L1MB1 LINE L1 5815 5960 -229 1 1344 648 206 173 11 chr5 99514507 99514698 -53022561 + Lx7 LINE L1 7250 7471 -225 1 1344 207 0 0 0 chr5 99514701 99514724 -53022535 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1344 563 188 52 8 chr5 99514725 99514859 -53022400 + Lx7 LINE L1 7557 7696 0 1 1344 21 0 0 0 chr5 99514883 99514904 -53022355 + AT_rich Low_complexity Low_complexity 1 21 0 1 1344 272 316 58 50 chr5 99514907 99515027 -53022232 - LTR16C LTR ERVL -8 481 361 1 1344 345 100 0 0 chr5 99515028 99515078 -53022181 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 2 1344 27 49 0 0 chr5 99515857 99515898 -53021361 + AT_rich Low_complexity Low_complexity 1 41 0 2 1344 324 0 0 0 chr5 99516085 99516121 -53021138 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1344 608 301 89 35 chr5 99516570 99516843 -53020416 + MTE2a LTR MaLR 51 320 -59 2 1344 216 97 0 0 chr5 99517297 99517328 -53019931 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1344 2726 103 35 22 chr5 99517416 99517822 -53019437 + Lx LINE L1 6242 6652 -2 2 1344 600 287 19 34 chr5 99519140 99519349 -53017910 + MLT1B LTR MaLR 185 390 0 2 1344 924 295 156 59 chr5 99520150 99520611 -53016648 + Tigger1 DNA MER2_type 30 535 -1883 2 1344 970 267 51 0 chr5 99520656 99520892 -53016367 + B4 SINE B4 29 276 -16 2 1344 4754 285 78 36 chr5 99520962 99522615 -53014644 + Tigger1 DNA MER2_type 526 2254 -164 2 1344 180 111 0 0 chr5 99522615 99522642 -53014617 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1344 4754 285 78 36 chr5 99522642 99522806 -53014453 + Tigger1 DNA MER2_type 2255 2418 0 2 1344 200 34 0 33 chr5 99523648 99523678 -53013581 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1344 408 40 0 0 chr5 99524000 99524050 -53013209 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 1344 689 145 92 46 chr5 99524050 99524202 -53013057 - Lx4A LINE L1 -7 7051 6893 3 1344 1426 86 21 11 chr5 99524718 99524907 -53012352 - B2_Mm2 SINE B2 -3 192 2 3 1344 280 253 159 11 chr5 99524959 99525047 -53012212 - PB1D10 SINE Alu -3 114 14 3 1344 1589 215 15 53 chr5 99527464 99527718 -53009541 + Lx9 LINE L1 7233 7478 -166 3 1344 429 20 0 0 chr5 99527718 99527768 -53009491 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1344 1589 215 15 53 chr5 99527768 99527925 -53009334 + Lx9 LINE L1 7479 7628 -16 3 1344 414 0 0 0 chr5 99527925 99527971 -53009288 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1344 324 0 0 0 chr5 99527971 99528006 -53009253 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1344 526 275 99 0 chr5 99528192 99528323 -53008936 + B4A SINE B4 149 292 0 3 1344 25 0 0 0 chr5 99528403 99528428 -53008831 + AT_rich Low_complexity Low_complexity 1 25 0 4 1344 679 168 168 0 chr5 99528482 99528613 -53008646 - B3 SINE B2 -62 154 2 4 1344 1312 156 14 22 chr5 99529526 99529749 -53007510 - URR1A DNA MER1_type 0 226 6 4 1344 371 82 0 0 chr5 99529923 99529972 -53007287 + ORR1A3 LTR MaLR 278 326 0 4 1344 503 302 39 35 chr5 99529973 99530230 -53007029 + Lx9 LINE L1 7213 7470 -174 4 1344 227 125 0 40 chr5 99530244 99530294 -53006965 + (CAGAGA)n Simple_repeat Simple_repeat 6 53 0 4 1344 309 272 150 12 chr5 99530324 99530484 -53006775 + HAL1 LINE L1 1410 1591 -916 4 1344 198 0 0 0 chr5 99531251 99531273 -53005986 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1344 28 0 0 0 chr5 99531312 99531340 -53005919 + AT_rich Low_complexity Low_complexity 1 28 0 4 1344 544 377 4 0 chr5 99531448 99531676 -53005583 - MER63D DNA AcHobo -693 368 140 4 1344 3354 51 18 0 chr5 99532211 99532604 -53004655 - MTB LTR MaLR 0 400 1 5 1344 567 274 8 0 chr5 99532862 99532986 -53004273 - B1F1 SINE Alu -24 125 1 5 1344 470 321 37 22 chr5 99532869 99533003 -53004256 - ID_B1 SINE B4 -29 195 60 5 1344 324 0 0 0 chr5 99533126 99533162 -53004097 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1344 749 302 45 45 chr5 99533391 99533679 -53003580 - B4A SINE B4 0 292 5 5 1344 24 32 0 0 chr5 99534142 99534173 -53003086 + AT_rich Low_complexity Low_complexity 1 31 0 5 1344 590 314 129 31 chr5 99534788 99535231 -53002028 + MLT1G LTR MaLR 119 595 0 5 1344 868 244 42 70 chr5 99535302 99535588 -53001671 + Lx6 LINE L1 7160 7437 -23 5 1344 351 44 0 0 chr5 99535697 99535742 -53001517 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1344 289 330 40 0 chr5 99537067 99537167 -53000092 - L2a LINE L2 -14 3412 3309 5 1344 182 138 0 0 chr5 99537203 99537232 -53000027 + MIR SINE MIR 85 113 -95 6 1344 270 0 0 0 chr5 99538956 99538986 -52998273 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1344 359 245 138 0 chr5 99539240 99539334 -52997925 + RSINE1 SINE B4 3 109 -56 6 1344 1083 297 75 19 chr5 99539389 99539853 -52997406 - L1MA5 LINE L1 -304 5996 5507 6 1344 681 269 42 2 chr5 99539857 99540088 -52997171 + L1MA5 LINE L1 6057 6293 -7 6 1344 853 254 95 53 chr5 99540892 99541154 -52996105 + B4A SINE B4 2 274 -18 6 1344 267 31 0 0 chr5 99541469 99541501 -52995758 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1344 9071 10 1 0 chr5 99541524 99543188 -52994071 - L1Md_T LINE L1 0 6582 4917 6 1344 29575 47 0 0 chr5 99543189 99546820 -52990439 + L1Md_T LINE L1 1285 4915 -968 6 1344 297 354 0 0 chr5 99547453 99547566 -52989693 + CT-rich Low_complexity Low_complexity 4 116 0 6 1344 1339 139 5 0 chr5 99547741 99547935 -52989324 - B2_Mm2 SINE B2 0 195 1 6 1344 230 357 99 31 chr5 99548368 99548530 -52988729 + MER63A DNA AcHobo 5 177 -33 6 1344 2963 165 40 21 chr5 99549100 99549745 -52987514 + RMER19A LTR ERVK 1 700 -37 7 1344 3299 61 5 8 chr5 99549745 99550142 -52987117 + MTA_Mm LTR MaLR 1 396 0 7 1344 1833 145 24 30 chr5 99550142 99550183 -52987076 + RMER19A LTR ERVK 701 737 0 7 1344 269 306 105 9 chr5 99550215 99550469 -52986790 + L1M2 LINE L1 5541 5816 -484 7 1344 1943 227 145 22 chr5 99550772 99551316 -52985943 - ORR1C2-int LTR MaLR -898 611 1 7 1344 1358 219 91 36 chr5 99551316 99551506 -52985753 - ORR1C2 LTR MaLR 0 384 173 7 1344 615 51 0 0 chr5 99551506 99551585 -52985674 + (GA)n Simple_repeat Simple_repeat 2 80 0 7 1344 1358 219 91 36 chr5 99551585 99551758 -52985501 - ORR1C2 LTR MaLR -212 172 2 7 1344 21 0 0 0 chr5 99551946 99551967 -52985292 + AT_rich Low_complexity Low_complexity 1 21 0 7 1344 524 179 8 0 chr5 99552551 99552668 -52984591 + (TTG)n Simple_repeat Simple_repeat 2 119 0 7 1344 1656 218 71 16 chr5 99552840 99553204 -52984055 + RMER1B Other Other 3 386 -680 7 1344 926 193 6 0 chr5 99553294 99553465 -52983794 + RMER1B Other Other 693 864 -202 7 1344 323 242 9 95 chr5 99553465 99553570 -52983689 + B4A SINE B4 197 292 0 7 1344 523 279 18 24 chr5 99554065 99554230 -52983029 - Tigger7 DNA MER2_type 0 2491 2328 7 1344 921 330 34 3 chr5 99554609 99554901 -52982358 - Tigger7 DNA MER2_type -2166 325 25 7 1344 252 0 0 0 chr5 99555180 99555208 -52982051 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1344 2091 198 74 6 chr5 99556538 99557011 -52980248 - RLTR16 LTR ERVK 0 505 1 8 1344 315 236 32 53 chr5 99557022 99557116 -52980143 - MER68 LTR ERVL -469 94 3 8 1344 883 316 50 16 chr5 99559299 99559682 -52977577 - MER68 LTR ERVL -11 552 157 8 1344 1727 134 44 79 chr5 99559804 99560145 -52977114 + ORR1A4 LTR MaLR 1 329 0 8 1344 270 0 0 0 chr5 99560476 99560506 -52976753 + (T)n Simple_repeat Simple_repeat 1 30 0 8 1344 348 349 40 23 chr5 99561751 99561924 -52975335 + B3A SINE B2 7 182 -16 8 1344 452 237 11 0 chr5 99562910 99563003 -52974256 - B3A SINE B2 -104 94 1 8 1344 239 225 0 14 chr5 99563333 99563405 -52973854 + CT-rich Low_complexity Low_complexity 3 73 0 8 1344 492 18 0 0 chr5 99563409 99563466 -52973793 + (TC)n Simple_repeat Simple_repeat 1 57 0 8 1344 390 354 92 65 chr5 99564199 99564308 -52972951 - MLT2B3 LTR ERVL -53 501 376 9 1344 1124 208 5 0 chr5 99564308 99564515 -52972744 + B3 SINE B2 2 209 -7 9 1344 390 354 92 65 chr5 99564515 99564882 -52972377 - MLT2B3 LTR ERVL -179 375 13 9 1344 1728 59 14 0 chr5 99565217 99565436 -52971823 + L1_Mus1 LINE L1 6346 6567 0 9 1344 1675 106 39 8 chr5 99565446 99565684 -52971575 + L1Md_F2 LINE L1 6318 6563 -19 9 1344 300 27 0 0 chr5 99565684 99565721 -52971538 + (TTAA)n Simple_repeat Simple_repeat 1 37 0 9 1344 1675 106 39 8 chr5 99565721 99565738 -52971521 + L1Md_F2 LINE L1 6564 6580 -2 9 1344 453 296 7 62 chr5 99565984 99566128 -52971131 - MER45A DNA Tip100 0 178 43 9 1344 1141 183 56 18 chr5 99566344 99566654 -52970605 + ORR1C2 LTR MaLR 2 339 -35 9 1344 1337 234 115 21 chr5 99566663 99567047 -52970212 + Lx7 LINE L1 6823 7242 -454 9 1344 192 77 0 0 chr5 99567111 99567137 -52970122 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1344 262 274 0 35 chr5 99568395 99568482 -52968777 + L1MB8 LINE L1 5135 5218 -928 9 1344 543 171 99 15 chr5 99568468 99568599 -52968660 + Lx3C LINE L1 6833 6974 -2 1 1344 388 278 61 19 chr5 99568603 99568832 -52968427 + L1MB8 LINE L1 5193 5425 -1019 9 1344 313 322 67 5 chr5 99568866 99569083 -52968176 + L1MB8 LINE L1 5505 5736 -437 9 1344 509 322 20 0 chr5 99569093 99569245 -52968014 + B3A SINE B2 1 155 -43 1 1344 336 102 0 0 chr5 99569246 99569295 -52967964 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1344 21 0 0 0 chr5 99569306 99569327 -52967932 + AT_rich Low_complexity Low_complexity 1 21 0 1 1344 219 213 21 0 chr5 99569332 99569379 -52967880 + (TA)n Simple_repeat Simple_repeat 1 48 0 1 1344 533 312 67 9 chr5 99569408 99569631 -52967628 + L1MB8 LINE L1 5773 6008 -170 9 1344 270 239 98 74 chr5 99570497 99570588 -52966671 - MTEa LTR MaLR 0 379 286 1 1344 2950 156 58 8 chr5 99570588 99571087 -52966172 - RLTR28 LTR ERVL 0 524 1 1 1344 270 239 98 74 chr5 99571087 99571117 -52966142 - MTEa LTR MaLR -94 285 255 1 1344 348 350 54 65 chr5 99572026 99572380 -52964879 - ORR1D2 LTR MaLR -4 366 17 1 1344 206 211 0 0 chr5 99572826 99572864 -52964395 + GA-rich Low_complexity Low_complexity 5 42 0 1 1344 2555 205 49 59 chr5 99573489 99574078 -52963181 + Lx7 LINE L1 6981 7557 -139 1 1344 1265 116 32 5 chr5 99574078 99574268 -52962991 - B2_Mm2 SINE B2 0 195 1 1 1344 2555 205 49 59 chr5 99574268 99574356 -52962903 + Lx7 LINE L1 7558 7650 -46 1 1344 338 241 12 12 chr5 99574644 99574728 -52962531 + U6 snRNA snRNA 1 84 -23 1 1344 3179 201 63 13 chr5 99574893 99575593 -52961666 + L1_Mur3 LINE L1 291 1025 -6703 1 1344 5809 144 8 37 chr5 99575591 99575926 -52961333 + L1_Mur3 LINE L1 4104 4429 -1451 1 1344 1112 69 0 52 chr5 99575926 99576079 -52961180 + B1_Mus2 SINE Alu 1 145 -2 1 1344 776 57 9 0 chr5 99576083 99576189 -52961070 + (GAGAA)n Simple_repeat Simple_repeat 4 110 0 1 1344 5809 144 8 37 chr5 99576189 99576405 -52960854 + L1_Mur3 LINE L1 4430 4635 -1245 1 1344 333 0 0 0 chr5 99576405 99576442 -52960817 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 1 1344 5809 144 8 37 chr5 99576442 99576965 -52960294 + L1_Mur3 LINE L1 4636 5152 -728 1 1344 1923 213 46 31 chr5 99577300 99577776 -52959483 - RLTR31A_Mm LTR ERVK -101 483 1 1 1344 302 296 107 43 chr5 99577776 99577960 -52959299 - RMER20B LTR ERVK -233 394 199 1 1344 581 148 5 16 chr5 99578087 99578192 -52959067 + L1_Mur3 LINE L1 5140 5265 -881 1 1344 879 238 67 0 chr5 99578441 99578634 -52958625 + B3 SINE B2 5 210 -6 1 1344 420 196 237 0 chr5 99578645 99578742 -52958517 + PB1D9 SINE Alu 1 120 0 1 1344 227 325 17 8 chr5 99578846 99578964 -52958295 + L1MEg LINE L1 850 968 -5116 1 1344 447 100 0 0 chr5 99579377 99579447 -52957812 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1344 182 146 0 40 chr5 99579449 99579499 -52957760 + (CAGAGA)n Simple_repeat Simple_repeat 1 48 0 1 1344 242 143 0 20 chr5 99579502 99579552 -52957707 + G-rich Low_complexity Low_complexity 1 49 0 1 1344 1324 29 12 12 chr5 99579559 99579732 -52957527 + (GGGAGA)n Simple_repeat Simple_repeat 4 176 0 1 1344 259 320 145 22 chr5 99580412 99580591 -52956668 + Charlie8 DNA MER1_type 24 224 -2204 1 1344 329 328 175 15 chr5 99581777 99582040 -52955219 - LTR16C LTR ERVL -9 480 176 1 1344 21 0 0 0 chr5 99583583 99583604 -52953655 + AT_rich Low_complexity Low_complexity 1 21 0 1 1344 270 0 0 0 chr5 99583612 99583642 -52953617 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1344 720 303 50 25 chr5 99583705 99583986 -52953273 - B4 SINE B4 -4 288 1 1 1344 2676 103 8 3 chr5 99584067 99584455 -52952804 + L1_Mus3 LINE L1 6235 6624 -14 1 1344 306 0 0 0 chr5 99584455 99584489 -52952770 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1344 210 323 155 14 chr5 99585825 99586138 -52951121 + L2a LINE L2 3033 3387 0 1 1344 360 0 0 0 chr5 99587282 99587322 -52949937 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1344 1459 6 0 32 chr5 99587323 99587509 -52949750 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 1 1344 530 265 46 7 chr5 99588485 99588637 -52948622 - MLT1B LTR MaLR -11 379 222 1 1344 667 195 165 0 chr5 99588837 99589001 -52948258 + B3 SINE B2 16 206 -10 1 1344 297 167 0 0 chr5 99590127 99590181 -52947078 + CT-rich Low_complexity Low_complexity 3 56 0 1 1344 1198 85 0 11 chr5 99590184 99590363 -52946896 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 1 1344 813 145 0 7 chr5 99590363 99590376 -52946883 - B1_Mur3 SINE Alu 0 149 137 1 1344 192 77 0 0 chr5 99590376 99590402 -52946857 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1344 813 145 0 7 chr5 99590402 99590527 -52946732 - B1_Mur3 SINE Alu -13 136 12 1 1344 21 0 0 0 chr5 99590897 99590918 -52946341 + AT_rich Low_complexity Low_complexity 1 21 0 1 1344 492 18 0 0 chr5 99591818 99591875 -52945384 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 1 1344 240 35 0 0 chr5 99592179 99592208 -52945051 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1344 2689 0 0 0 chr5 99592393 99592686 -52944573 - L1Md_T LINE L1 0 6582 6290 1 1344 496 295 7 7 chr5 99592860 99593010 -52944249 + B4A SINE B4 1 150 -142 1 1344 327 113 0 0 chr5 99593460 99593522 -52943737 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1344 321 248 0 0 chr5 99593569 99593682 -52943577 + (TG)n Simple_repeat Simple_repeat 2 114 0 1 1344 702 215 0 0 chr5 99593705 99594050 -52943209 + (TG)n Simple_repeat Simple_repeat 1 345 0 1 1344 479 233 0 11 chr5 99594063 99594245 -52943014 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1344 309 321 42 28 chr5 99594459 99594603 -52942656 - MIR SINE MIR 0 262 117 1 1344 2019 192 30 59 chr5 99596462 99596970 -52940289 + RLTR16 LTR ERVK 1 493 -12 1 1344 23 0 0 0 chr5 99597118 99597141 -52940118 + AT_rich Low_complexity Low_complexity 1 23 0 1 1344 568 329 14 18 chr5 99599221 99599438 -52937821 + ID_B1 SINE B4 9 224 0 1 1344 583 244 55 8 chr5 99600038 99600166 -52937093 - B1_Mur1 SINE Alu -11 138 5 1 1344 387 346 66 13 chr5 99600215 99600423 -52936836 + MLT2B1 LTR ERVL 264 491 -76 1 1344 2032 146 48 5 chr5 99600433 99600826 -52936433 + MTC LTR MaLR 12 421 0 1 1344 808 173 152 30 chr5 99601082 99601279 -52935980 + URR1A DNA MER1_type 6 226 0 1 1344 441 0 0 0 chr5 99601565 99601614 -52935645 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1344 375 302 113 29 chr5 99602279 99602518 -52934741 + ORR1E LTR MaLR 96 354 -5 1 1344 324 48 0 0 chr5 99603018 99603060 -52934199 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1344 254 329 41 0 chr5 99603315 99603388 -52933871 - ID4_ SINE ID 0 83 8 1 1344 243 0 0 0 chr5 99603476 99603503 -52933756 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1 1344 274 257 71 0 chr5 99603503 99603573 -52933686 - MER58A DNA MER1_type -141 83 9 1 1344 228 104 40 40 chr5 99603592 99603642 -52933617 + A-rich Low_complexity Low_complexity 5 54 0 1 1344 22 35 0 0 chr5 99606137 99606166 -52931093 + AT_rich Low_complexity Low_complexity 1 29 0 1 1344 2152 173 104 68 chr5 99606820 99607360 -52929899 + RMER15 LTR ERVL 1 559 -16 1 1344 1613 148 59 92 chr5 99607448 99607806 -52929453 - ORR1B1 LTR MaLR -8 386 41 1 1344 1784 117 36 80 chr5 99609664 99610000 -52927259 + ORR1A4 LTR MaLR 1 321 -8 1 1344 216 0 0 0 chr5 99610131 99610155 -52927104 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1344 336 48 0 0 chr5 99610155 99610197 -52927062 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1 1344 1098 63 0 0 chr5 99610198 99610341 -52926918 + (GAA)n Simple_repeat Simple_repeat 3 145 0 1 1344 863 255 10 0 chr5 99610572 99610768 -52926491 + B3 SINE B2 1 198 -18 1 1344 255 61 0 0 chr5 99610770 99610803 -52926456 + (CAG)n Simple_repeat Simple_repeat 3 35 0 1 1344 24 53 0 0 chr5 99611442 99611480 -52925779 + AT_rich Low_complexity Low_complexity 1 38 0 1 1344 256 313 68 8 chr5 99611696 99611828 -52925431 + ID_B1 SINE B4 84 223 -1 1 1344 186 43 0 0 chr5 99611830 99611853 -52925406 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1344 956 204 40 0 chr5 99611867 99612068 -52925191 + B3 SINE B2 3 211 -5 1 1344 654 304 67 5 chr5 99612232 99612427 -52924832 + MER58A DNA MER1_type 18 224 0 1 1344 207 0 0 0 chr5 99613104 99613127 -52924132 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 1 1344 3248 65 0 2 chr5 99613530 99613929 -52923330 + MTB LTR MaLR 1 398 -2 1 1344 2067 112 13 0 chr5 99614114 99614428 -52922831 - ORR1A3 LTR MaLR -8 318 1 1 1344 1136 84 6 6 chr5 99614518 99614686 -52922573 - B2_Mm2 SINE B2 -26 169 2 1 1345 248 294 14 2 chr5 99616099 99616182 -52921077 - ID4_ SINE ID -62 90 8 1 1345 908 237 20 0 chr5 99616189 99616387 -52920872 + B3 SINE B2 2 203 -13 1 1345 395 193 0 11 chr5 99616387 99616476 -52920783 + (TA)n Simple_repeat Simple_repeat 1 88 0 1 1345 190 132 66 0 chr5 99616541 99616617 -52920642 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 1345 2210 134 57 45 chr5 99618103 99618533 -52918726 - RLTR1D LTR ERV1 -16 589 144 1 1345 1366 288 97 44 chr5 99619169 99619853 -52917406 + L1MA6 LINE L1 5564 6283 -17 1 1345 24 53 0 0 chr5 99619865 99619903 -52917356 + AT_rich Low_complexity Low_complexity 1 38 0 1 1345 694 198 25 31 chr5 99621197 99621359 -52915900 - URR1B DNA MER1_type 0 225 65 1 1345 232 300 90 16 chr5 99621516 99621638 -52915621 + MIRb SINE MIR 26 156 -112 1 1345 336 276 23 0 chr5 99621894 99621981 -52915278 + B3A SINE B2 5 93 -105 1 1345 608 285 5 38 chr5 99622003 99622189 -52915070 + B3 SINE B2 31 210 -6 1 1345 2187 171 110 2 chr5 99623316 99623780 -52913479 + RLTR28 LTR ERVL 1 514 -10 1 1345 242 206 16 0 chr5 99624101 99624164 -52913095 + GA-rich Low_complexity Low_complexity 3 66 0 1 1345 331 164 0 14 chr5 99624342 99624416 -52912843 + B3 SINE B2 4 76 -140 1 1345 568 274 0 32 chr5 99624420 99624578 -52912681 + MTC LTR MaLR 1 153 -254 1 1345 550 246 74 51 chr5 99624613 99624909 -52912350 - RLTR15 LTR ERVK -53 306 4 1 1345 1519 146 0 12 chr5 99624915 99625172 -52912087 + MTC LTR MaLR 165 418 -3 1 1345 642 203 31 0 chr5 99625182 99625310 -52911949 + B3 SINE B2 85 216 0 1 1345 556 356 46 34 chr5 99625368 99625630 -52911629 + B4A SINE B4 26 290 -2 1 1345 2469 90 3 3 chr5 99625776 99626099 -52911160 - ORR1A2 LTR MaLR -4 323 1 1 1345 735 71 0 0 chr5 99626124 99626222 -52911037 + (GGGA)n Simple_repeat Simple_repeat 3 100 0 1 1345 1601 168 19 87 chr5 99627105 99627484 -52909775 - Lx7 LINE L1 0 7696 7344 2 1345 817 267 46 5 chr5 99627550 99627768 -52909491 - Lx7 LINE L1 -347 7349 7123 2 1345 1101 191 33 0 chr5 99627762 99627972 -52909287 - Lx7 LINE L1 -724 6972 6756 2 1345 504 122 0 35 chr5 99627980 99628065 -52909194 - B1_Mus2 SINE Alu -1 146 65 2 1345 1119 41 0 0 chr5 99628054 99628200 -52909059 + BGLII LTR ERVK 276 421 0 2 1345 400 136 0 15 chr5 99628200 99628265 -52908994 - B1_Mur4 SINE Alu -86 64 1 2 1345 377 238 12 0 chr5 99628266 99628346 -52908913 - Lx7 LINE L1 -931 6765 6685 2 1345 462 276 43 0 chr5 99628335 99628451 -52908808 - Lx6 LINE L1 -847 6613 6493 2 1345 664 201 71 0 chr5 99628451 99628605 -52908654 - MTC LTR MaLR 0 421 257 2 1345 1571 232 163 19 chr5 99628616 99628893 -52908366 - RMER20B LTR ERVK 0 627 334 2 1345 396 0 0 0 chr5 99628893 99628937 -52908322 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1345 1571 232 163 19 chr5 99628937 99629199 -52908060 - RMER20B LTR ERVK -294 333 11 2 1345 385 113 0 31 chr5 99629195 99629259 -52908000 - MTC LTR MaLR -151 270 209 2 1345 1485 123 107 4 chr5 99629261 99629522 -52907737 - L1_Mur3 LINE L1 -3052 2828 2541 2 1345 936 221 40 36 chr5 99629882 99630135 -52907124 - RLTR28B LTR ERVL -227 254 1 2 1345 1713 130 21 3 chr5 99630135 99630420 -52906839 - L1_Mur3 LINE L1 -3332 2548 2259 2 1345 2604 211 51 30 chr5 99630489 99631120 -52906139 - L1_Mur3 LINE L1 -6668 1060 417 2 1345 264 200 0 0 chr5 99631240 99631300 -52905959 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 1345 3203 46 20 3 chr5 99633772 99634164 -52903095 + MTB LTR MaLR 2 400 0 2 1345 180 0 0 0 chr5 99634170 99634190 -52903069 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1345 683 170 30 0 chr5 99634271 99634406 -52902853 + ORR1C1 LTR MaLR 18 156 -222 2 1345 463 151 105 0 chr5 99634432 99634518 -52902741 + B1_Mur1 SINE Alu 34 128 -21 2 1345 237 254 0 0 chr5 99634519 99634536 -52902723 + polypurine Low_complexity Low_complexity 1 17 0 2 1345 1326 78 0 0 chr5 99634536 99634716 -52902543 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1345 237 254 0 0 chr5 99634716 99634761 -52902498 + polypurine Low_complexity Low_complexity 18 62 0 2 1345 248 307 57 0 chr5 99635360 99635448 -52901811 + LTR16A1 LTR ERVL 244 336 -120 2 1345 182 361 22 22 chr5 99636120 99636256 -52901003 - L3 LINE CR1 -622 3867 3732 2 1345 445 212 158 0 chr5 99636833 99636979 -52900280 + L1MA4 LINE L1 5726 5894 -406 2 1345 222 314 110 68 chr5 99637181 99637417 -52899842 - L2b LINE L2 -214 3161 2916 2 1345 206 211 82 27 chr5 99637580 99637653 -52899606 - L2b LINE L2 -714 2705 2629 2 1345 446 345 65 22 chr5 99637760 99638127 -52899132 - MLT1I LTR MaLR -3 408 26 2 1345 354 245 10 20 chr5 99638154 99638254 -52899005 + B1F1 SINE Alu 7 105 -44 2 1345 1477 219 58 29 chr5 99638978 99639354 -52897905 + MTD LTR MaLR 33 419 0 2 1345 2470 130 20 15 chr5 99639487 99639879 -52897380 - ORR1B1 LTR MaLR 0 394 1 2 1345 356 261 61 8 chr5 99639977 99640108 -52897151 - MER34-int LTR ERV1 -6889 1318 1181 2 1345 322 266 0 37 chr5 99640352 99640434 -52896825 + RMER30 DNA MER1_type 7 85 -117 2 1345 258 32 0 0 chr5 99640435 99640466 -52896793 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 2 1345 345 306 81 118 chr5 99640466 99640562 -52896697 + B4 SINE B4 3 98 -194 2 1345 1016 148 0 0 chr5 99640562 99640711 -52896548 + B1_Mur4 SINE Alu 1 149 -1 2 1345 345 306 81 118 chr5 99640711 99640825 -52896434 + B4 SINE B4 99 205 -87 2 1345 418 153 41 0 chr5 99640815 99640827 -52896432 - ORR1B1 LTR MaLR -263 131 120 2 1345 270 0 0 0 chr5 99640827 99640857 -52896402 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1345 418 153 41 0 chr5 99640857 99640942 -52896317 - ORR1B1 LTR MaLR -275 119 31 2 1345 276 100 0 0 chr5 99643960 99644000 -52893259 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 1345 1147 83 12 0 chr5 99644038 99644207 -52893052 + (GAAA)n Simple_repeat Simple_repeat 4 174 0 2 1345 747 78 0 0 chr5 99644207 99644309 -52892950 + (GGAA)n Simple_repeat Simple_repeat 4 106 0 2 1345 408 138 11 0 chr5 99645777 99645864 -52891395 + ORR1B1 LTR MaLR 50 137 -257 2 1345 1883 130 34 12 chr5 99645865 99646192 -52891067 + ORR1B1 LTR MaLR 61 394 0 2 1345 288 77 0 0 chr5 99647742 99647781 -52889478 + (CAG)n Simple_repeat Simple_repeat 3 41 0 2 1345 590 203 0 8 chr5 99648159 99648278 -52888981 - MTC LTR MaLR -8 413 296 2 1345 295 304 59 0 chr5 99648281 99648383 -52888876 - PB1D7 SINE Alu -12 108 1 2 1345 391 266 9 44 chr5 99648887 99649001 -52888258 - PB1D10 SINE Alu -1 116 7 2 1345 1363 78 6 11 chr5 99649369 99649551 -52887708 - B2_Mm2 SINE B2 -14 181 1 2 1345 2468 152 59 3 chr5 99649758 99650260 -52886999 + RMER19C LTR ERVK 1 593 -18 2 1345 597 178 9 0 chr5 99651798 99651905 -52885354 - B1F2 SINE Alu -7 142 35 2 1345 183 100 0 0 chr5 99652473 99652503 -52884756 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2 1345 276 325 71 7 chr5 99653528 99653683 -52883576 + MER58B DNA MER1_type 82 246 -95 2 1345 280 177 31 31 chr5 99654220 99654383 -52882876 + (TA)n Simple_repeat Simple_repeat 1 163 0 2 1345 614 254 70 43 chr5 99654396 99654581 -52882678 - ID_B1 SINE B4 -23 201 12 2 1345 910 76 12 3 chr5 99654616 99654763 -52882496 + B2_Mm2 SINE B2 1 155 -61 2 1345 245 333 33 116 chr5 99654763 99654857 -52882402 + ID_B1 SINE B4 1 221 -3 2 1345 840 169 209 0 chr5 99656151 99656328 -52880931 + B3 SINE B2 3 216 0 2 1345 219 146 0 0 chr5 99657237 99657278 -52879981 + (CAA)n Simple_repeat Simple_repeat 1 41 0 2 1345 189 0 0 0 chr5 99657540 99657561 -52879698 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1345 261 0 0 0 chr5 99657723 99657752 -52879507 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1345 366 85 0 0 chr5 99657753 99657812 -52879447 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 2 1345 229 100 20 20 chr5 99657813 99657864 -52879395 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1345 296 309 0 20 chr5 99658663 99658762 -52878497 - MER58B DNA MER1_type -87 254 158 2 1345 304 346 48 0 chr5 99658774 99658878 -52878381 - ID_B1 SINE B4 -6 218 110 2 1345 1257 299 35 35 chr5 99659398 99659946 -52877313 - L1ME2 LINE L1 -36 6128 5581 2 1345 303 265 61 0 chr5 99660134 99660232 -52877027 - L1ME2 LINE L1 -860 5286 5183 2 1345 270 0 0 0 chr5 99661069 99661099 -52876160 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1345 346 226 75 156 chr5 99661571 99661744 -52875515 + MTE2a LTR MaLR 3 161 -218 2 1345 612 217 90 6 chr5 99661931 99662098 -52875161 + MTE2a LTR MaLR 185 365 -14 2 1345 513 0 0 0 chr5 99664423 99664480 -52872779 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 2 1345 606 150 83 8 chr5 99665239 99665360 -52871899 + B3 SINE B2 1 130 -86 2 1345 1085 34 25 37 chr5 99666884 99667129 -52870130 + (TCCA)n Simple_repeat Simple_repeat 1 241 0 2 1345 324 0 0 0 chr5 99667862 99667898 -52869361 + (TAA)n Simple_repeat Simple_repeat 1 36 0 2 1345 1217 106 6 11 chr5 99667901 99668082 -52869177 + B2_Mm2 SINE B2 5 184 -11 2 1345 299 309 91 0 chr5 99668929 99669039 -52868220 + L4 LINE RTE 1360 1479 -550 2 1345 279 0 0 0 chr5 99669725 99669756 -52867503 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1345 21 0 0 0 chr5 99670167 99670188 -52867071 + AT_rich Low_complexity Low_complexity 1 21 0 2 1345 839 210 0 0 chr5 99673296 99673439 -52863820 + B1_Mur3 SINE Alu 2 144 -5 2 1345 902 182 183 19 chr5 99675308 99675576 -52861683 + RLTR20C LTR ERVK 1 312 -222 2 1345 320 162 0 29 chr5 99675574 99675644 -52861615 + RLTR20C LTR ERVK 424 491 -87 2 1345 423 243 127 14 chr5 99677066 99677208 -52860051 - B3A SINE B2 0 198 41 2 1345 324 0 0 0 chr5 99677260 99677296 -52859963 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1345 491 112 0 12 chr5 99677325 99677406 -52859853 + (TTTC)n Simple_repeat Simple_repeat 1 80 0 2 1345 21 36 0 0 chr5 99678769 99678797 -52858462 + AT_rich Low_complexity Low_complexity 1 28 0 2 1345 258 95 0 0 chr5 99679289 99679331 -52857928 + (CCCCCA)n Simple_repeat Simple_repeat 1 42 0 2 1345 264 127 0 0 chr5 99680949 99681004 -52856255 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1345 183 365 14 0 chr5 99682330 99682404 -52854855 - L2b LINE L2 -23 3352 3278 2 1345 504 0 0 0 chr5 99683578 99683634 -52853625 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1345 198 209 0 0 chr5 99684121 99684164 -52853095 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1345 318 321 114 8 chr5 99684172 99684304 -52852955 - RSINE1 SINE B4 -17 148 3 2 1345 306 0 0 0 chr5 99684353 99684387 -52852872 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1345 566 243 38 44 chr5 99684390 99684549 -52852710 - B3A SINE B2 -38 160 3 2 1345 1772 295 50 24 chr5 99685411 99686075 -52851184 - Lx9 LINE L1 -315 7329 6649 2 1345 210 37 0 0 chr5 99689129 99689156 -52848103 + (CTCA)n Simple_repeat Simple_repeat 4 30 0 2 1345 267 288 6 6 chr5 99690595 99690688 -52846571 + CT-rich Low_complexity Low_complexity 1 93 0 2 1345 436 292 80 56 chr5 99690698 99690948 -52846311 + B4 SINE B4 3 258 -34 2 1345 1128 85 0 28 chr5 99690959 99691141 -52846118 + (TCTCCC)n Simple_repeat Simple_repeat 3 179 0 2 1345 225 0 0 0 chr5 99691146 99691171 -52846088 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1345 246 95 0 0 chr5 99691591 99691633 -52845626 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 2 1345 533 247 153 16 chr5 99691649 99691838 -52845421 - ID_B1 SINE B4 -3 221 7 2 1345 754 288 76 57 chr5 99692095 99692478 -52844781 - RMER5 LTR ERV1 -10 524 135 2 1345 353 304 52 0 chr5 99692873 99693008 -52844251 - RSINE1 SINE B4 -22 143 2 2 1345 230 310 302 40 chr5 99693440 99693592 -52843667 + ID_B1 SINE B4 2 193 -31 2 1345 778 209 82 11 chr5 99694697 99694881 -52842378 - B3A SINE B2 -1 197 1 2 1345 388 255 28 0 chr5 99695813 99695919 -52841340 + ID_B1 SINE B4 109 217 -7 2 1345 426 20 0 0 chr5 99695922 99695973 -52841286 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1345 386 250 20 59 chr5 99695994 99696096 -52841163 + PB1D7 SINE Alu 1 98 -22 2 1345 361 321 36 0 chr5 99697426 99697538 -52839721 - B1F SINE Alu -5 144 29 3 1345 354 45 0 0 chr5 99697873 99697917 -52839342 + (CATA)n Simple_repeat Simple_repeat 4 47 0 3 1345 453 122 0 0 chr5 99698098 99698172 -52839087 + (TA)n Simple_repeat Simple_repeat 1 74 0 3 1345 299 287 72 0 chr5 99699861 99699978 -52837281 - MIR SINE MIR -103 173 39 3 1345 889 245 0 55 chr5 99700315 99700535 -52836724 + B3 SINE B2 1 208 -8 3 1345 189 107 0 0 chr5 99701813 99701841 -52835418 + (CAAAG)n Simple_repeat Simple_repeat 1 28 0 3 1345 285 321 48 0 chr5 99702230 99702314 -52834945 + B1F1 SINE Alu 2 89 -60 3 1345 216 130 0 0 chr5 99702332 99702378 -52834881 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 3 1345 276 127 0 0 chr5 99702445 99702500 -52834759 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1345 309 26 0 0 chr5 99703484 99703522 -52833737 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1345 202 182 0 0 chr5 99703772 99703805 -52833454 + (CGA)n Simple_repeat Simple_repeat 3 35 0 3 1345 191 354 12 0 chr5 99705811 99705893 -52831366 + L2a LINE L2 3344 3426 0 3 1345 338 232 0 12 chr5 99706038 99706121 -52831138 - ID2 SINE ID 0 83 2 3 1345 251 244 48 8 chr5 99706121 99706245 -52831014 + MamRep4096 DNA hAT? 97 225 -201 3 1345 250 246 16 0 chr5 99707252 99707313 -52829946 - MLT1A0 LTR MaLR -224 141 80 3 1345 247 319 22 11 chr5 99709182 99709274 -52827985 + LTR16B1 LTR ERVL 179 271 -209 3 1345 361 283 69 44 chr5 99710487 99710646 -52826613 + B4 SINE B4 16 178 -114 3 1345 251 185 56 0 chr5 99710647 99710701 -52826558 + B4A SINE B4 118 174 -118 3 1345 334 194 56 0 chr5 99710706 99710778 -52826481 + B4 SINE B4 118 193 -99 3 1345 215 281 88 22 chr5 99710804 99710895 -52826364 + B3A SINE B2 18 114 -84 3 1345 459 273 0 0 chr5 99711128 99711398 -52825861 + (CA)n Simple_repeat Simple_repeat 1 270 0 3 1345 183 129 0 0 chr5 99713725 99713756 -52823503 + (TTCG)n Simple_repeat Simple_repeat 3 33 0 3 1345 423 0 0 0 chr5 99714482 99714529 -52822730 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 3 1345 270 283 41 74 chr5 99714889 99715011 -52822248 + RLTR25B LTR ERVK 5 122 -906 3 1345 699 272 6 6 chr5 99717325 99717378 -52819881 + B4A SINE B4 33 85 -207 3 1345 329 294 34 40 chr5 99717378 99717527 -52819732 + B1F SINE Alu 1 148 -1 3 1345 297 294 130 54 chr5 99717664 99717926 -52819333 + MLT1A0 LTR MaLR 80 361 -4 3 1345 4622 86 6 5 chr5 99717995 99718707 -52818552 - Lx LINE L1 -472 6182 5470 3 1345 2718 114 53 42 chr5 99718707 99719163 -52818096 + Lx LINE L1 6194 6654 0 3 1345 246 250 67 0 chr5 99721013 99721073 -52816186 - MER58B DNA MER1_type 0 341 278 3 1345 198 0 0 0 chr5 99721113 99721135 -52816124 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1345 189 0 0 0 chr5 99721406 99721427 -52815832 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 3 1345 280 284 21 0 chr5 99721428 99721523 -52815736 - PB1D10 SINE Alu -16 101 5 3 1345 1010 192 60 86 chr5 99722160 99722428 -52814831 + Lx5 LINE L1 6773 7033 -17 3 1345 207 0 0 0 chr5 99722431 99722454 -52814805 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 1345 333 118 0 0 chr5 99722458 99722509 -52814750 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 3 1345 780 256 92 15 chr5 99722603 99722865 -52814394 + B4A SINE B4 3 284 -8 3 1345 357 125 0 0 chr5 99722890 99722946 -52814313 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1345 230 353 14 57 chr5 99723666 99723807 -52813452 + MIRb SINE MIR 54 188 -80 3 1345 760 290 0 24 chr5 99724030 99724242 -52813017 + B3 SINE B2 3 209 -7 3 1345 464 203 101 8 chr5 99726025 99726144 -52811115 + ID_B1 SINE B4 88 217 -7 3 1345 318 115 0 0 chr5 99726171 99726223 -52811036 + (GGA)n Simple_repeat Simple_repeat 3 54 0 3 1345 39 22 0 0 chr5 99726576 99726622 -52810637 + AT_rich Low_complexity Low_complexity 1 46 0 3 1345 201 195 24 0 chr5 99726651 99726692 -52810567 + (TATG)n Simple_repeat Simple_repeat 3 44 0 3 1345 524 246 101 7 chr5 99726715 99726854 -52810405 - B4A SINE B4 -20 272 121 3 1345 270 0 0 0 chr5 99726870 99726900 -52810359 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1345 289 326 0 0 chr5 99727102 99727200 -52810059 + BC1_Mm scRNA scRNA 2 99 -53 3 1345 513 326 51 36 chr5 99731623 99731897 -52805362 + RMER15-int LTR ERVL 1944 2221 -2778 3 1345 218 290 151 57 chr5 99732724 99732830 -52804429 + PB1D10 SINE Alu 2 117 0 3 1345 360 64 0 0 chr5 99732967 99733014 -52804245 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1345 432 118 0 0 chr5 99734539 99734607 -52802652 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 3 1345 198 0 0 0 chr5 99734916 99734938 -52802321 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1345 224 140 60 0 chr5 99735057 99735107 -52802152 + A-rich Low_complexity Low_complexity 2 54 0 3 1345 337 41 66 26 chr5 99735554 99735630 -52801629 + (CAAAAA)n Simple_repeat Simple_repeat 4 82 0 3 1345 392 268 56 28 chr5 99736363 99736487 -52800772 + RSINE1 SINE B4 19 147 -18 3 1345 339 85 0 0 chr5 99736487 99736534 -52800725 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1345 392 268 56 28 chr5 99736534 99736551 -52800708 + RSINE1 SINE B4 148 164 -1 3 1345 261 0 0 0 chr5 99736551 99736580 -52800679 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 1345 381 22 0 0 chr5 99736581 99736627 -52800632 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1345 212 304 36 48 chr5 99736924 99737007 -52800252 - L2a LINE L2 -273 3153 3072 3 1345 534 323 327 18 chr5 99737512 99737898 -52799361 - LTR33 LTR ERVL -4 511 7 3 1345 468 0 0 0 chr5 99738466 99738518 -52798741 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1345 37830 22 1 7 chr5 99738549 99743529 -52793730 + L1Md_T LINE L1 648 5586 -297 3 1345 8719 27 0 0 chr5 99743529 99744591 -52792668 + L1Md_T LINE L1 5587 6582 0 3 1345 201 74 0 0 chr5 99744737 99744764 -52792495 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1345 346 275 12 0 chr5 99744864 99744944 -52792315 - ID2 SINE ID 0 83 3 3 1345 446 298 28 7 chr5 99744944 99745086 -52792173 - B1F SINE Alu -1 148 4 3 1346 221 75 0 24 chr5 99746200 99746241 -52791018 + (TTA)n Simple_repeat Simple_repeat 2 41 0 3 1346 327 220 46 83 chr5 99746247 99746356 -52790903 - PB1D10 SINE Alu 0 117 13 3 1346 465 19 0 0 chr5 99746526 99746580 -52790679 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 1346 1153 75 1 5 chr5 99747504 99747665 -52789594 + L1Md_F2 LINE L1 6123 6277 -359 3 1346 186 0 28 56 chr5 99748903 99748939 -52788320 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 3 1346 261 0 0 0 chr5 99750377 99750406 -52786853 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3 1346 1093 84 0 0 chr5 99750409 99750551 -52786708 - B1_Mus1 SINE Alu -6 142 1 3 1346 22 35 0 0 chr5 99750796 99750825 -52786434 + AT_rich Low_complexity Low_complexity 1 29 0 3 1346 910 56 0 24 chr5 99750825 99750952 -52786307 - B1_Mm SINE Alu -1 146 23 3 1346 394 206 21 21 chr5 99750958 99751052 -52786207 + MER5A1 DNA MER1_type 7 100 -66 3 1346 280 239 135 11 chr5 99751751 99751840 -52785419 - RSINE1 SINE B4 -60 105 6 3 1346 28 22 0 22 chr5 99752081 99752093 -52785166 + AT_rich Low_complexity Low_complexity 1 12 0 3 1346 1622 42 0 0 chr5 99752093 99752282 -52784977 + B2_Mm1a SINE B2 1 189 -4 3 1346 28 22 0 22 chr5 99752282 99752315 -52784944 + AT_rich Low_complexity Low_complexity 1 33 0 3 1346 707 87 10 0 chr5 99752545 99752649 -52784610 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 1346 253 312 132 8 chr5 99752746 99752875 -52784384 - MIRb SINE MIR -119 149 5 3 1346 286 250 73 0 chr5 99752957 99753025 -52784234 + B1F SINE Alu 67 139 -10 3 1346 603 40 0 0 chr5 99753615 99753689 -52783570 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 1346 676 221 54 24 chr5 99753907 99754074 -52783185 + ORR1E LTR MaLR 2 173 -186 3 1346 477 0 0 0 chr5 99754361 99754414 -52782845 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1346 253 333 0 0 chr5 99754684 99754771 -52782488 - L2c LINE L2 -49 3338 3252 3 1346 21 57 0 0 chr5 99755294 99755329 -52781930 + AT_rich Low_complexity Low_complexity 1 35 0 3 1346 385 196 175 0 chr5 99755475 99755572 -52781687 - MTD LTR MaLR -14 405 292 3 1346 731 304 73 15 chr5 99755664 99755925 -52781334 - MTD LTR MaLR -143 276 1 3 1346 281 327 99 12 chr5 99755963 99756124 -52781135 - B4A SINE B4 -10 282 108 3 1346 1010 194 8 128 chr5 99756576 99756818 -52780441 - B3 SINE B2 0 216 4 3 1346 26 30 0 0 chr5 99757304 99757337 -52779922 + AT_rich Low_complexity Low_complexity 1 33 0 3 1346 786 303 23 49 chr5 99757373 99757678 -52779581 - MTE2a LTR MaLR -14 365 69 3 1346 796 179 0 8 chr5 99758985 99759484 -52777775 + (CA)n Simple_repeat Simple_repeat 1 494 0 3 1346 351 0 0 0 chr5 99759716 99759755 -52777504 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1346 663 253 99 47 chr5 99759790 99760043 -52777216 - B4 SINE B4 -21 271 6 3 1346 441 0 0 0 chr5 99760074 99760123 -52777136 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1346 409 284 196 8 chr5 99760473 99760718 -52776541 + B4A SINE B4 2 292 0 3 1346 297 277 92 26 chr5 99761121 99761286 -52775973 - MIRb SINE MIR -84 184 14 3 1346 378 0 0 0 chr5 99762465 99762507 -52774752 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1346 923 184 119 13 chr5 99762782 99763008 -52774251 + Lx4B LINE L1 6809 7058 0 3 1346 285 286 65 28 chr5 99764254 99764362 -52772897 - PB1D10 SINE Alu -1 116 5 3 1346 399 204 7 29 chr5 99764409 99764545 -52772714 + CT-rich Low_complexity Low_complexity 3 135 0 4 1346 325 272 12 0 chr5 99764549 99764630 -52772629 - ID4_ SINE ID 0 83 2 4 1346 320 257 88 0 chr5 99767222 99767318 -52769941 + B1_Mus2 SINE Alu 5 109 -11 4 1346 2281 70 19 0 chr5 99767341 99767657 -52769602 + ORR1A2 LTR MaLR 6 327 0 4 1346 383 266 57 4 chr5 99770029 99770147 -52767112 + B1_Mur3 SINE Alu 1 124 -25 4 1346 213 218 25 37 chr5 99770284 99770300 -52766959 + (TATATG)n Simple_repeat Simple_repeat 5 21 0 4 1346 1775 117 80 87 chr5 99770300 99770525 -52766734 + RMER17C LTR ERVK 1 211 -199 4 1346 687 25 0 0 chr5 99770525 99770606 -52766653 + (TC)n Simple_repeat Simple_repeat 1 81 0 4 1346 1775 117 80 87 chr5 99770606 99770793 -52766466 + RMER17C LTR ERVK 212 410 0 4 1346 213 218 25 37 chr5 99770793 99770857 -52766402 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 4 1346 751 257 76 30 chr5 99771072 99771441 -52765818 - Charlie1a DNA MER1_type -43 1412 1027 4 1346 712 141 62 0 chr5 99771454 99771582 -52765677 + B1_Mus2 SINE Alu 12 147 0 4 1346 471 113 0 0 chr5 99771582 99771653 -52765606 + (CAAAAA)n Simple_repeat Simple_repeat 6 76 0 4 1346 617 137 17 0 chr5 99771654 99771771 -52765488 + ORR1B1 LTR MaLR 3 121 -273 4 1346 543 200 205 7 chr5 99771777 99771928 -52765331 - MTD LTR MaLR -43 376 196 4 1346 1318 166 51 0 chr5 99771930 99772165 -52765094 + ORR1B1 LTR MaLR 148 394 0 4 1346 416 300 57 10 chr5 99772202 99772394 -52764865 - Charlie1a DNA MER1_type -426 1029 829 4 1346 380 290 45 45 chr5 99772497 99772674 -52764585 - Charlie1a DNA MER1_type -770 685 509 4 1346 5214 113 5 3 chr5 99772675 99773619 -52763640 - Lx LINE L1 -631 6005 5057 4 1346 4172 98 35 50 chr5 99773620 99774277 -52762982 + Lx LINE L1 6008 6654 0 4 1346 474 312 76 27 chr5 99774480 99774704 -52762555 - Charlie1a DNA MER1_type -1163 292 58 4 1346 331 21 20 20 chr5 99774776 99774825 -52762434 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 4 1346 25 51 0 0 chr5 99775184 99775223 -52762036 + AT_rich Low_complexity Low_complexity 1 39 0 4 1346 184 316 132 33 chr5 99775731 99775852 -52761407 - MIRb SINE MIR -113 155 23 4 1346 399 167 0 0 chr5 99775935 99776025 -52761234 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 1346 641 36 12 0 chr5 99776046 99776130 -52761129 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 4 1346 499 196 161 0 chr5 99776142 99776254 -52761005 - B1_Mus1 SINE Alu -13 135 6 4 1346 256 286 138 31 chr5 99776254 99776272 -52760987 - ID_B1 SINE B4 -13 211 68 4 1346 498 175 186 0 chr5 99778409 99778506 -52758753 + RSINE1 SINE B4 13 127 -38 4 1346 294 29 0 0 chr5 99778517 99778552 -52758707 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1346 22 35 0 0 chr5 99778614 99778643 -52758616 + AT_rich Low_complexity Low_complexity 1 29 0 4 1346 2058 59 3 81 chr5 99778717 99779013 -52758246 + L1_Mus2 LINE L1 6292 6564 -2 4 1346 207 88 0 0 chr5 99779683 99779717 -52757542 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1346 255 319 66 0 chr5 99780098 99780189 -52757070 + B1F SINE Alu 11 107 -42 4 1346 304 210 129 0 chr5 99781845 99781907 -52755352 - ID4 SINE ID -12 71 2 4 1346 576 291 40 6 chr5 99781990 99782163 -52755096 + B3A SINE B2 2 180 -18 4 1346 1765 174 75 28 chr5 99782248 99782454 -52754805 - ORR1C1 LTR MaLR 0 378 164 4 1346 216 0 0 0 chr5 99782454 99782478 -52754781 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 4 1346 1765 174 75 28 chr5 99782478 99782632 -52754627 - ORR1C1 LTR MaLR -215 163 2 4 1346 564 65 0 0 chr5 99783479 99783556 -52753703 + (CA)n Simple_repeat Simple_repeat 2 78 0 4 1346 381 211 13 0 chr5 99784341 99784417 -52752842 + ID4 SINE ID 7 83 0 4 1346 386 21 0 0 chr5 99784966 99785014 -52752245 - HAL1-3A_ME LINE L1 -835 2023 1976 4 1346 211 283 0 0 chr5 99785014 99785074 -52752185 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1346 930 175 0 0 chr5 99785079 99785222 -52752037 - B1_Mur4 SINE Alu -3 147 5 4 1346 407 299 28 42 chr5 99786346 99786489 -52750770 + RSINE1 SINE B4 4 144 -21 4 1346 275 0 29 0 chr5 99786500 99786535 -52750724 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1346 537 16 0 0 chr5 99786535 99786596 -52750663 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 1346 581 230 35 14 chr5 99787440 99787581 -52749678 + B1_Mus1 SINE Alu 5 148 0 4 1346 457 258 31 31 chr5 99787743 99787871 -52749388 + B1_Mur2 SINE Alu 3 130 -19 4 1346 1107 89 0 32 chr5 99787875 99788061 -52749198 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1346 756 143 0 0 chr5 99788090 99788216 -52749043 + (GGGA)n Simple_repeat Simple_repeat 4 129 0 4 1346 681 36 0 0 chr5 99788752 99788836 -52748423 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 4 1346 222 62 0 0 chr5 99788886 99788918 -52748341 + (CAT)n Simple_repeat Simple_repeat 3 34 0 4 1346 216 274 55 0 chr5 99790620 99790693 -52746566 - ID4 SINE ID -5 78 2 4 1346 443 33 0 16 chr5 99790904 99790966 -52746293 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1346 220 27 0 51 chr5 99791102 99791141 -52746118 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1346 409 47 15 15 chr5 99791390 99791455 -52745804 + (TC)n Simple_repeat Simple_repeat 1 65 0 4 1346 304 143 29 0 chr5 99791454 99791524 -52745735 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1346 449 230 6 0 chr5 99791553 99791731 -52745528 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1346 306 0 0 0 chr5 99791758 99791792 -52745467 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1346 261 0 0 0 chr5 99791792 99791820 -52745439 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1346 233 274 55 0 chr5 99791864 99791937 -52745322 - ID4 SINE ID 0 83 7 4 1346 231 36 0 0 chr5 99792486 99792514 -52744745 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1346 795 155 0 0 chr5 99792622 99792751 -52744508 + B3 SINE B2 2 130 -86 4 1346 1256 40 0 0 chr5 99792804 99792952 -52744307 + B1_Mus1 SINE Alu 1 148 0 4 1346 846 116 0 0 chr5 99793060 99793189 -52744070 + (TCC)n Simple_repeat Simple_repeat 3 131 0 4 1346 261 227 26 26 chr5 99794737 99794814 -52742445 + MIR SINE MIR 84 160 -102 4 1346 1011 30 22 0 chr5 99794962 99795097 -52742162 + (TCC)n Simple_repeat Simple_repeat 2 139 0 4 1346 367 318 36 79 chr5 99795389 99795528 -52741731 - B3A SINE B2 -26 190 58 4 1346 518 137 0 10 chr5 99797493 99797589 -52739670 + (TTTTC)n Simple_repeat Simple_repeat 2 96 0 4 1346 246 226 106 31 chr5 99797589 99797661 -52739598 - RMER17C LTR ERVK -138 272 192 4 1346 734 0 0 11 chr5 99797661 99797748 -52739511 + (GAGAA)n Simple_repeat Simple_repeat 5 90 0 4 1346 246 226 106 31 chr5 99797748 99797835 -52739424 - RMER17C LTR ERVK -219 191 101 4 1346 952 39 16 8 chr5 99798700 99798829 -52738430 + (TTTC)n Simple_repeat Simple_repeat 1 130 0 4 1346 201 139 0 0 chr5 99798834 99798843 -52738416 + (TC)n Simple_repeat Simple_repeat 1 9 0 4 1346 2844 56 0 22 chr5 99798843 99799209 -52738050 - L1Md_F2 LINE L1 -12 6570 6213 4 1346 201 139 0 0 chr5 99799209 99799235 -52738024 + (TC)n Simple_repeat Simple_repeat 1 26 0 4 1346 761 103 8 0 chr5 99799240 99799357 -52737902 + (TTCC)n Simple_repeat Simple_repeat 2 119 0 4 1346 257 311 98 32 chr5 99799443 99799566 -52737693 + MIR SINE MIR 18 148 -120 4 1346 438 258 37 79 chr5 99801345 99801509 -52735750 - RSINE1 SINE B4 -6 159 3 4 1346 271 361 59 0 chr5 99802037 99802156 -52735103 - MLT1J LTR MaLR -315 197 72 4 1346 942 99 42 24 chr5 99803316 99803482 -52733777 - URR1A DNA MER1_type 0 226 58 4 1346 185 324 67 29 chr5 99805543 99805648 -52731611 - MIRb SINE MIR -156 112 4 4 1346 207 0 0 0 chr5 99806561 99806584 -52730675 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 4 1346 269 292 34 0 chr5 99807642 99807731 -52729528 - LFSINE_Vert SINE SINE -284 175 84 4 1346 180 0 0 0 chr5 99809255 99809275 -52727984 + (TCCC)n Simple_repeat Simple_repeat 4 23 0 4 1346 306 0 0 0 chr5 99809925 99809959 -52727300 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1346 1079 146 97 5 chr5 99810007 99810213 -52727046 + RMER1B Other Other 694 918 -148 4 1346 303 28 0 0 chr5 99810213 99810249 -52727010 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 4 1346 533 142 19 0 chr5 99810253 99810359 -52726900 + RMER1B Other Other 957 1064 -2 4 1346 441 0 0 0 chr5 99810389 99810438 -52726821 + (TA)n Simple_repeat Simple_repeat 2 50 0 4 1346 257 200 0 16 chr5 99810706 99810767 -52726492 - MIR SINE MIR -105 157 98 4 1346 241 250 0 0 chr5 99810969 99811021 -52726238 + MIRc SINE MIR 96 147 -121 4 1346 23 0 0 0 chr5 99811510 99811533 -52725726 + AT_rich Low_complexity Low_complexity 1 23 0 4 1346 180 0 0 0 chr5 99815891 99815911 -52721348 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1346 2300 137 48 10 chr5 99818247 99818644 -52718615 - MTC LTR MaLR 0 421 10 4 1346 192 298 22 77 chr5 99818675 99818766 -52718493 - L2a LINE L2 -41 3385 3300 4 1346 180 111 0 0 chr5 99818775 99818802 -52718457 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 4 1346 275 179 104 104 chr5 99818836 99818849 -52718410 + MT2B LTR ERVL 152 164 -437 4 1346 607 93 82 18 chr5 99818849 99818959 -52718300 + B1_Mus1 SINE Alu 4 120 -28 4 1346 199 54 26 26 chr5 99818983 99819021 -52718238 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 4 1346 24 0 0 0 chr5 99819707 99819731 -52717528 + AT_rich Low_complexity Low_complexity 1 24 0 4 1346 395 202 0 9 chr5 99820988 99821093 -52716166 + GA-rich Low_complexity Low_complexity 1 104 0 4 1346 248 103 0 0 chr5 99821104 99821143 -52716116 + L2a LINE L2 3377 3415 -11 4 1346 438 36 0 0 chr5 99821525 99821581 -52715678 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1346 351 0 0 0 chr5 99821581 99821619 -52715640 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1346 675 289 91 76 chr5 99821619 99822147 -52715112 + MLT1E3 LTR MaLR 64 599 -25 4 1346 756 61 0 0 chr5 99822147 99822245 -52715014 + (CATATA)n Simple_repeat Simple_repeat 5 102 0 4 1346 378 0 0 0 chr5 99822245 99822286 -52714973 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1346 649 237 90 48 chr5 99824549 99824859 -52712400 + RLTR15 LTR ERVK 1 323 -36 4 1346 396 40 0 0 chr5 99825043 99825093 -52712166 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1346 338 247 0 118 chr5 99825854 99825964 -52711295 + MYSERV6-int LTR ERVK 3989 4085 -4874 5 1346 1173 55 0 33 chr5 99826123 99826135 -52711124 - B1_Mm SINE Alu -1 146 138 5 1346 302 0 0 26 chr5 99826135 99826174 -52711085 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1346 1173 55 0 33 chr5 99826174 99826312 -52710947 - B1_Mm SINE Alu -10 137 1 5 1346 22 35 0 0 chr5 99826316 99826345 -52710914 + AT_rich Low_complexity Low_complexity 1 29 0 5 1346 488 223 62 0 chr5 99827828 99827940 -52709319 + PB1D9 SINE Alu 1 119 -1 5 1346 239 277 100 138 chr5 99828151 99828390 -52708869 - RMER1C Other Other 0 1342 1113 5 1346 665 256 30 35 chr5 99828236 99828438 -52708821 - Lx8 LINE L1 -98 7375 7175 5 1346 474 275 33 24 chr5 99828706 99828942 -52708317 - Lx7 LINE L1 -289 6002 5699 5 1346 235 155 155 0 chr5 99830173 99830231 -52707028 + Lx5 LINE L1 6981 7047 -3 5 1346 192 77 0 0 chr5 99830244 99830270 -52706989 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1346 231 268 28 0 chr5 99833241 99833312 -52703947 + PB1D10 SINE Alu 1 73 -44 5 1346 207 0 0 0 chr5 99833362 99833385 -52703874 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1346 396 0 0 0 chr5 99833528 99833572 -52703687 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1346 198 344 44 38 chr5 99834101 99834261 -52702998 + MIRb SINE MIR 100 260 -8 5 1346 310 326 162 19 chr5 99836690 99836956 -52700303 + L1M4 LINE L1 5377 5680 -498 5 1346 286 327 9 0 chr5 99837022 99837132 -52700127 + L1M4 LINE L1 5676 5786 -393 5 1346 1656 162 28 50 chr5 99837152 99837516 -52699743 + Lx LINE L1 6299 6654 0 5 1346 285 98 0 0 chr5 99837533 99837574 -52699685 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 5 1346 441 251 52 58 chr5 99837626 99837799 -52699460 + L1MB7 LINE L1 5847 6018 -166 5 1346 263 175 18 0 chr5 99838372 99838429 -52698830 + (TA)n Simple_repeat Simple_repeat 2 59 0 5 1346 1176 244 152 24 chr5 99839519 99840354 -52696905 + L1_Mur3 LINE L1 610 1538 -4342 5 1346 516 32 0 0 chr5 99840354 99840416 -52696843 + (GTTTG)n Simple_repeat Simple_repeat 2 63 0 5 1346 210 212 0 103 chr5 99840416 99840474 -52696785 - B1_Mur4 SINE Alu -9 141 90 5 1346 361 116 186 14 chr5 99840550 99840620 -52696639 - B1_Mus2 SINE Alu -50 97 16 5 1346 300 53 0 0 chr5 99840620 99840658 -52696601 + (CCA)n Simple_repeat Simple_repeat 2 39 0 5 1346 1076 209 13 0 chr5 99840664 99840899 -52696360 + L1_Mur3 LINE L1 1533 1770 -4110 5 1346 2373 232 34 2 chr5 99840899 99841401 -52695858 + Lx7 LINE L1 6594 7111 -585 5 1346 243 284 9 27 chr5 99841407 99841519 -52695740 + Lx7 LINE L1 7275 7384 -312 5 1346 938 249 35 38 chr5 99841519 99841866 -52695393 + RLTR15 LTR ERVK 1 346 -13 5 1346 591 78 0 0 chr5 99841899 99841989 -52695270 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1346 180 0 0 0 chr5 99841989 99842008 -52695251 + (GA)n Simple_repeat Simple_repeat 1 20 0 5 1346 23 68 0 0 chr5 99842137 99842181 -52695078 + AT_rich Low_complexity Low_complexity 1 44 0 5 1346 380 324 17 30 chr5 99843536 99843791 -52693468 - L1MA4 LINE L1 -286 6011 5768 5 1346 405 325 95 19 chr5 99844757 99844967 -52692292 + Lx8 LINE L1 6823 7048 -425 5 1346 1520 165 100 108 chr5 99845104 99845504 -52691755 + RMER10B LTR ERVL 1 397 -1 5 1346 234 315 36 114 chr5 99845751 99845891 -52691368 + MER5B DNA MER1_type 49 177 -1 5 1346 633 185 203 31 chr5 99847593 99847803 -52689456 - Lx4B LINE L1 0 7058 6728 5 1346 199 54 26 26 chr5 99848796 99848834 -52688425 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 1346 243 300 0 12 chr5 99849343 99849424 -52687835 - MER5A DNA MER1_type -95 94 15 5 1346 21 0 0 0 chr5 99851658 99851679 -52685580 + AT_rich Low_complexity Low_complexity 1 21 0 5 1346 277 318 27 0 chr5 99852856 99852966 -52684293 - RSINE1 SINE B4 -7 158 46 5 1346 472 86 24 24 chr5 99854387 99854470 -52682789 + (TTTCC)n Simple_repeat Simple_repeat 4 86 0 5 1346 682 231 13 20 chr5 99854473 99854623 -52682636 - B1_Mur2 SINE Alu 0 149 1 5 1346 240 35 0 0 chr5 99855462 99855491 -52681768 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 5 1346 608 297 135 38 chr5 99858313 99858631 -52678628 + MER63D DNA AcHobo 20 368 -693 5 1346 275 296 12 12 chr5 99858633 99858715 -52678544 + B4 SINE B4 2 83 -209 5 1346 24 32 0 0 chr5 99860085 99860116 -52677143 + AT_rich Low_complexity Low_complexity 1 31 0 5 1346 675 185 0 0 chr5 99860120 99860266 -52676993 + (TG)n Simple_repeat Simple_repeat 1 146 0 5 1346 619 279 6 13 chr5 99860276 99860432 -52676827 - RSINE1 SINE B4 -8 157 3 5 1346 396 91 0 0 chr5 99861147 99861213 -52676046 + (CA)n Simple_repeat Simple_repeat 2 67 0 5 1346 21 0 0 0 chr5 99862114 99862135 -52675124 + AT_rich Low_complexity Low_complexity 1 21 0 5 1346 540 0 0 0 chr5 99862341 99862401 -52674858 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1346 211 73 73 0 chr5 99862734 99862775 -52674484 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 5 1346 244 309 24 101 chr5 99863734 99863903 -52673356 - MIR SINE MIR -79 183 28 5 1346 227 331 88 20 chr5 99864521 99864669 -52672590 - MIRb SINE MIR -79 189 32 5 1346 375 23 0 0 chr5 99865884 99865928 -52671331 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1346 241 315 32 11 chr5 99866299 99866392 -52670867 - MER5A1 DNA MER1_type -71 95 1 5 1346 542 224 75 0 chr5 99866925 99867059 -52670200 + B1_Mur2 SINE Alu 6 149 0 5 1346 370 222 167 0 chr5 99868726 99868852 -52668407 - B1_Mur1 SINE Alu -1 148 2 5 1346 183 80 0 0 chr5 99869205 99869230 -52668029 + (CTTTG)n Simple_repeat Simple_repeat 1 25 0 5 1346 659 169 132 28 chr5 99869524 99869706 -52667553 - B3 SINE B2 -1 215 15 5 1346 183 240 0 91 chr5 99869991 99870046 -52667213 - MIRm SINE MIR -4 272 223 5 1346 334 257 6 6 chr5 99872858 99873034 -52664225 + (TG)n Simple_repeat Simple_repeat 2 177 0 5 1346 487 267 128 39 chr5 99873243 99873524 -52663735 + L1ME3A LINE L1 5727 6032 -141 5 1346 459 205 0 0 chr5 99873675 99873758 -52663501 + ID_B1 SINE B4 81 163 -61 5 1346 1020 32 0 0 chr5 99874835 99874959 -52662300 + (TAGA)n Simple_repeat Simple_repeat 1 124 0 5 1346 588 65 0 0 chr5 99875502 99875579 -52661680 + (TG)n Simple_repeat Simple_repeat 1 77 0 5 1346 557 276 100 55 chr5 99875858 99876169 -52661090 - L1MA5A LINE L1 -270 6027 5703 5 1346 582 326 96 0 chr5 99876209 99876396 -52660863 + MLT1I LTR MaLR 89 293 -118 5 1347 377 39 0 19 chr5 99877511 99877563 -52659696 + (TTTTG)n Simple_repeat Simple_repeat 1 51 0 5 1347 538 210 0 40 chr5 99877563 99877687 -52659572 - B1_Mur2 SINE Alu 0 149 31 5 1347 384 348 92 23 chr5 99877713 99878255 -52659004 + MLT1G3 LTR MaLR 13 591 0 5 1347 386 307 121 5 chr5 99878706 99878896 -52658363 + MLT1B LTR MaLR 6 217 -173 5 1347 201 154 0 0 chr5 99879499 99879538 -52657721 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 5 1347 346 292 114 25 chr5 99879549 99879707 -52657552 - MER58A DNA MER1_type 0 224 53 5 1347 240 300 0 36 chr5 99880628 99880711 -52656548 - L2c LINE L2 -50 3337 3258 5 1347 765 144 0 0 chr5 99880864 99880996 -52656263 + (GAAAA)n Simple_repeat Simple_repeat 3 134 0 5 1347 1415 219 90 19 chr5 99882267 99882643 -52654616 - MTD LTR MaLR -16 403 1 5 1347 760 317 7 17 chr5 99883399 99883688 -52653571 + B4A SINE B4 2 287 -5 5 1347 2139 163 49 17 chr5 99884549 99884955 -52652304 + MTC LTR MaLR 1 419 -2 5 1347 1025 178 82 13 chr5 99884961 99885194 -52652065 + MTC-int LTR MaLR 22 270 -988 5 1347 3820 183 60 10 chr5 99885198 99885977 -52651282 + RMER19B LTR ERVK 73 890 -12 5 1347 3790 134 34 6 chr5 99885990 99886634 -52650625 + MTC-int LTR MaLR 253 914 -344 5 1347 1632 181 60 85 chr5 99886646 99887044 -52650215 + MTC LTR MaLR 34 421 0 5 1347 264 59 0 0 chr5 99887171 99887205 -52650054 + (TTG)n Simple_repeat Simple_repeat 2 35 0 5 1347 214 182 0 22 chr5 99887412 99887457 -52649802 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1347 258 335 153 29 chr5 99887465 99887674 -52649585 - B4 SINE B4 0 292 58 5 1347 1321 174 0 18 chr5 99887718 99887941 -52649318 + URR1B DNA MER1_type 5 223 -2 5 1347 279 140 0 0 chr5 99888526 99888576 -52648683 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1347 1528 232 83 17 chr5 99888685 99888820 -52648439 - RCHARR1 DNA MER1_type 0 974 814 5 1347 206 32 32 0 chr5 99888820 99888851 -52648408 + (TA)n Simple_repeat Simple_repeat 1 32 0 5 1347 1528 232 83 17 chr5 99888851 99889123 -52648136 - RCHARR1 DNA MER1_type -161 813 540 5 1347 357 225 102 61 chr5 99889519 99889610 -52647649 - RCHARR1 DNA MER1_type -557 417 326 5 1347 189 0 0 0 chr5 99889610 99889631 -52647628 + (CAA)n Simple_repeat Simple_repeat 2 22 0 5 1347 357 225 102 61 chr5 99889631 99889686 -52647573 - RCHARR1 DNA MER1_type -649 325 266 5 1347 798 293 62 12 chr5 99890092 99890351 -52646908 - RCHARR1 DNA MER1_type -702 272 1 5 1347 666 261 61 0 chr5 99890545 99890577 -52646682 + ORR1E LTR MaLR 2 34 -325 5 1347 225 0 0 0 chr5 99890577 99890602 -52646657 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1347 666 285 61 22 chr5 99890602 99890820 -52646439 + ORR1E LTR MaLR 35 249 -121 5 1347 308 253 13 0 chr5 99891662 99891741 -52645518 - ID4 SINE ID 0 83 4 5 1347 429 351 89 3 chr5 99892742 99893056 -52644203 + L1M5 LINE L1 5392 5732 -392 5 1347 474 281 76 23 chr5 99893296 99893467 -52643792 - B3A SINE B2 -18 180 1 5 1347 210 37 0 0 chr5 99893761 99893788 -52643471 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1347 357 208 83 60 chr5 99894662 99894795 -52642464 - RLTR42-int LTR ERVK -4126 1396 1261 5 1347 199 180 32 16 chr5 99895142 99895204 -52642055 + CT-rich Low_complexity Low_complexity 4 66 0 5 1347 3025 30 16 3 chr5 99896399 99896766 -52640493 + L1Md_F3 LINE L1 6213 6584 0 5 1347 939 187 21 51 chr5 99896777 99897228 -52640031 - RMER17C LTR ERVK -22 388 1 5 1347 524 309 47 6 chr5 99898061 99898230 -52639029 - ORR1E LTR MaLR -181 178 3 5 1347 194 207 0 17 chr5 99899179 99899209 -52638050 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1347 434 18 18 0 chr5 99899209 99899264 -52637995 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1347 194 207 0 17 chr5 99899264 99899292 -52637967 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1347 1086 118 0 12 chr5 99899357 99899528 -52637731 - B2_Mm2 SINE B2 -25 170 2 6 1347 693 243 17 17 chr5 99899547 99899723 -52637536 - Lx6 LINE L1 -15 7445 7270 6 1347 356 158 0 0 chr5 99899725 99899782 -52637477 + B3 SINE B2 2 58 -158 6 1347 314 303 99 62 chr5 99899777 99899939 -52637320 + LTR16A LTR ERVL 122 289 -162 6 1347 1125 286 113 60 chr5 99900752 99901559 -52635700 + Charlie7 DNA MER1_type 1728 2577 -35 6 1347 546 324 32 25 chr5 99901657 99901924 -52635335 + B4A SINE B4 1 269 -23 6 1347 321 89 0 0 chr5 99901924 99901969 -52635290 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1347 546 324 32 25 chr5 99901969 99901986 -52635273 + B4A SINE B4 270 286 -6 6 1347 538 268 8 0 chr5 99902080 99902207 -52635052 - MER5A DNA MER1_type -61 128 1 6 1347 294 273 208 71 chr5 99905425 99905622 -52631637 + B4A SINE B4 1 224 -68 6 1347 755 48 0 0 chr5 99905521 99905625 -52631634 + B1_Mus2 SINE Alu 44 147 0 6 1347 355 325 106 40 chr5 99905863 99906184 -52631075 - L2a LINE L2 -60 3366 3025 6 1347 220 255 0 38 chr5 99906281 99906334 -52630925 - L2a LINE L2 -561 2858 2808 6 1347 276 30 0 0 chr5 99907037 99907070 -52630189 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1347 540 30 0 0 chr5 99909327 99909393 -52627866 + (TC)n Simple_repeat Simple_repeat 1 66 0 6 1347 238 273 12 61 chr5 99909416 99909498 -52627761 + Tigger14a DNA MER2_type 44 121 -203 6 1347 391 266 0 24 chr5 99909564 99909689 -52627570 + MIR SINE MIR 34 150 -58 6 1347 287 219 96 0 chr5 99909739 99909812 -52627447 - MIRb SINE MIR -31 237 158 6 1347 258 282 0 0 chr5 99911503 99911574 -52625685 + ID4_ SINE ID 1 71 -12 6 1347 429 20 0 0 chr5 99911833 99911883 -52625376 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1347 298 337 11 11 chr5 99912626 99912740 -52624519 + PB1D10 SINE Alu 1 119 -1 6 1347 445 310 78 10 chr5 99913606 99913861 -52623398 - LTR48 LTR ERV1 -115 672 211 6 1347 890 163 0 14 chr5 99914032 99914175 -52623084 - B1_Mur3 SINE Alu -8 141 1 6 1347 666 285 25 15 chr5 99915605 99915808 -52621451 - B3 SINE B2 -11 205 1 6 1347 387 364 122 23 chr5 99915906 99916210 -52621049 - LTR33A LTR ERVL -148 372 39 6 1347 279 326 11 0 chr5 99916248 99916343 -52620916 + MIR SINE MIR 161 256 -6 6 1347 22 0 0 0 chr5 99916439 99916461 -52620798 + AT_rich Low_complexity Low_complexity 1 22 0 6 1347 1132 67 5 27 chr5 99917107 99917291 -52619968 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 1347 1127 221 44 103 chr5 99917482 99917781 -52619478 - ORR1D2 LTR MaLR -3 367 78 6 1347 1140 256 66 29 chr5 99917781 99918131 -52619128 + ORR1D2 LTR MaLR 5 367 -3 6 1347 1127 221 44 103 chr5 99918131 99918149 -52619110 - ORR1D2 LTR MaLR -293 77 75 6 1347 2988 136 84 39 chr5 99918149 99918709 -52618550 - RMER4B LTR ERVK 0 585 1 6 1347 1127 221 44 103 chr5 99918709 99918778 -52618481 - ORR1D2 LTR MaLR -296 74 3 6 1347 279 0 0 0 chr5 99919100 99919131 -52618128 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1347 688 195 11 0 chr5 99919550 99919724 -52617535 + (TA)n Simple_repeat Simple_repeat 2 177 0 6 1347 252 59 0 0 chr5 99920250 99920284 -52616975 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1347 387 0 0 0 chr5 99920296 99920339 -52616920 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1347 279 0 0 0 chr5 99922636 99922667 -52614592 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1347 721 147 41 0 chr5 99922667 99922802 -52614457 - B1_Mur4 SINE Alu -9 141 1 6 1347 448 326 26 39 chr5 99922937 99923167 -52614092 + MIRb SINE MIR 20 246 -22 6 1347 1009 72 0 0 chr5 99923316 99923455 -52613804 + B1_Mus2 SINE Alu 9 147 0 6 1347 785 0 38 0 chr5 99924239 99924344 -52612915 + (CA)n Simple_repeat Simple_repeat 2 110 0 6 1347 486 0 0 0 chr5 99925340 99925394 -52611865 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1347 940 225 50 0 chr5 99927864 99928064 -52609195 + B3 SINE B2 1 210 -6 6 1347 313 118 0 42 chr5 99928292 99928363 -52608896 + (CAGAGA)n Simple_repeat Simple_repeat 4 71 0 6 1347 615 51 0 0 chr5 99928665 99928744 -52608515 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1347 509 296 82 0 chr5 99930411 99930566 -52606693 + ID_B1 SINE B4 1 159 -65 6 1347 198 0 0 0 chr5 99930566 99930588 -52606671 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 6 1347 509 296 82 0 chr5 99930588 99930638 -52606621 + ID_B1 SINE B4 160 222 -2 6 1347 420 177 52 10 chr5 99930704 99930801 -52606458 - B4A SINE B4 -4 288 188 6 1347 649 149 0 9 chr5 99931486 99931594 -52605665 - B3 SINE B2 -109 107 1 6 1347 256 279 68 81 chr5 99932349 99932497 -52604762 - MLT1A0 LTR MaLR -11 354 209 6 1347 537 16 0 0 chr5 99932609 99932671 -52604588 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1347 205 314 14 28 chr5 99933713 99933785 -52603474 + (CACG)n Simple_repeat Simple_repeat 1 71 0 6 1347 258 81 0 0 chr5 99935454 99935491 -52601768 + (TTGTG)n Simple_repeat Simple_repeat 4 40 0 6 1347 301 238 24 36 chr5 99936054 99936137 -52601122 - MER20 DNA MER1_type -85 134 53 6 1347 205 314 14 0 chr5 99936379 99936449 -52600810 - L2c LINE L2 -49 3338 3268 6 1347 216 0 0 0 chr5 99936684 99936708 -52600551 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1347 195 139 0 0 chr5 99937693 99937729 -52599530 + (TC)n Simple_repeat Simple_repeat 1 36 0 6 1347 401 332 29 30 chr5 99937767 99937986 -52599273 - MTD LTR MaLR -214 205 11 6 1347 486 307 0 49 chr5 99938551 99938695 -52598564 - B1F1 SINE Alu -12 137 1 6 1347 21 71 0 0 chr5 99940019 99940061 -52597198 + AT_rich Low_complexity Low_complexity 1 42 0 6 1347 730 169 58 7 chr5 99941654 99941791 -52595468 + B1_Mur2 SINE Alu 1 144 -5 6 1347 650 254 109 0 chr5 99941974 99942167 -52595092 + ID_B1 SINE B4 1 214 -10 6 1347 328 82 0 0 chr5 99942896 99942945 -52594314 - HAL1-3A_ME LINE L1 -834 2024 1976 6 1347 197 210 16 0 chr5 99942981 99943043 -52594216 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1347 279 237 22 0 chr5 99943099 99943234 -52594025 + (TG)n Simple_repeat Simple_repeat 1 138 0 6 1347 326 162 14 0 chr5 99943284 99943358 -52593901 + (TG)n Simple_repeat Simple_repeat 2 76 0 6 1347 249 333 43 9 chr5 99944994 99945109 -52592150 - L4 LINE RTE -236 1793 1675 6 1347 1114 207 194 23 chr5 99945296 99945642 -52591617 - MTD LTR MaLR -14 405 1 6 1347 970 230 9 27 chr5 99946124 99946343 -52590916 + B3 SINE B2 2 216 0 6 1347 622 109 18 0 chr5 99947895 99948005 -52589254 + (TAGA)n Simple_repeat Simple_repeat 4 115 0 6 1347 287 307 0 19 chr5 99949765 99949868 -52587391 - BC1_Mm scRNA scRNA -51 101 1 6 1347 1279 126 32 9 chr5 99952579 99952795 -52584464 + Lx2 LINE L1 6777 6997 0 6 1347 1018 112 67 0 chr5 99952859 99953037 -52584222 - L1_Mus3 LINE L1 0 6638 6449 6 1347 26 0 0 0 chr5 99953088 99953114 -52584145 + AT_rich Low_complexity Low_complexity 1 26 0 6 1347 266 304 90 36 chr5 99953267 99953434 -52583825 - MLT2D LTR ERVL -190 224 49 6 1347 795 250 11 11 chr5 99953442 99953628 -52583631 + B3 SINE B2 31 216 0 6 1347 224 136 16 63 chr5 99953964 99954027 -52583232 + A-rich Low_complexity Low_complexity 1 60 0 6 1347 649 286 28 23 chr5 99955171 99955386 -52581873 + B3 SINE B2 1 216 0 6 1347 253 208 0 25 chr5 99956875 99956954 -52580305 + CT-rich Low_complexity Low_complexity 1 77 0 6 1347 337 80 20 0 chr5 99957916 99957966 -52579293 - HAL1-3A_ME LINE L1 -832 2026 1976 6 1347 783 159 18 22 chr5 99957967 99958244 -52579015 + (TATG)n Simple_repeat Simple_repeat 1 275 0 6 1347 364 229 0 18 chr5 99958230 99958341 -52578918 + (TATATG)n Simple_repeat Simple_repeat 2 110 0 6 1347 742 271 59 5 chr5 99958378 99958600 -52578659 - B4A SINE B4 -16 276 43 6 1347 1035 225 10 0 chr5 99961263 99961472 -52575787 - B3 SINE B2 -5 211 1 6 1347 404 75 58 104 chr5 99961873 99962140 -52575119 + (CCTAG)n Simple_repeat Simple_repeat 1 254 0 6 1347 1223 123 89 0 chr5 99962169 99962372 -52574887 - URR1A DNA MER1_type 0 226 6 6 1347 365 274 71 106 chr5 99962655 99962915 -52574344 - MLT1J LTR MaLR -142 302 50 6 1347 1251 70 0 0 chr5 99963245 99963416 -52573843 + (GA)n Simple_repeat Simple_repeat 2 172 0 6 1347 416 297 24 24 chr5 99966217 99966386 -52570873 + L1M5 LINE L1 5589 5757 -405 6 1347 271 210 31 85 chr5 99966467 99966564 -52570695 + RSINE1 SINE B4 82 164 -1 6 1347 2277 107 0 69 chr5 99966647 99966997 -52570262 - ORR1A2 LTR MaLR 0 327 2 6 1347 3052 58 3 0 chr5 99967667 99968049 -52569210 - L1_Mus1 LINE L1 0 6567 6185 6 1347 773 141 281 6 chr5 99968134 99968305 -52568954 - URR1A DNA MER1_type -7 219 2 6 1347 21 36 0 0 chr5 99968386 99968414 -52568845 + AT_rich Low_complexity Low_complexity 1 28 0 6 1347 624 218 17 0 chr5 99968424 99968598 -52568661 + GA-rich Low_complexity Low_complexity 1 177 0 6 1347 222 211 0 0 chr5 99968598 99968636 -52568623 + polypurine Low_complexity Low_complexity 1 38 0 6 1347 538 278 48 7 chr5 99968636 99968781 -52568478 - B3A SINE B2 -39 159 9 6 1347 195 305 91 25 chr5 99969077 99969198 -52568061 - MIR SINE MIR -105 157 29 6 1347 806 277 94 4 chr5 99969412 99969610 -52567649 + B4A SINE B4 2 216 -76 6 1347 387 0 0 0 chr5 99969610 99969653 -52567606 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 6 1347 806 277 94 4 chr5 99969653 99969719 -52567540 + B4A SINE B4 217 289 -3 6 1347 333 0 0 0 chr5 99969780 99969817 -52567442 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1347 341 373 131 32 chr5 99972533 99972907 -52564352 + MLT1K LTR MaLR 163 573 -22 6 1347 552 294 39 0 chr5 99973150 99973330 -52563929 + MIR SINE MIR 66 252 -10 6 1347 198 303 112 50 chr5 99973369 99973529 -52563730 + L2a LINE L2 2979 3148 -278 6 1347 312 27 0 0 chr5 99974396 99974433 -52562826 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1347 244 250 18 0 chr5 99974501 99974557 -52562702 + GA-rich Low_complexity Low_complexity 2 58 0 7 1347 284 318 38 15 chr5 99976336 99976467 -52560792 - MIR SINE MIR -21 241 108 7 1347 1728 253 36 27 chr5 99977223 99977699 -52559560 - Lx9 LINE L1 -893 6751 6272 7 1347 242 195 26 13 chr5 99977759 99977837 -52559422 + T-rich Low_complexity Low_complexity 6 84 0 7 1347 2162 94 3 3 chr5 99977860 99978179 -52559080 - ORR1A2 LTR MaLR -8 319 1 7 1347 1480 244 21 26 chr5 99978193 99978668 -52558591 - Lx9 LINE L1 -478 7166 6807 7 1347 1296 193 66 0 chr5 99978667 99978926 -52558333 + Lx9 LINE L1 7147 7422 -222 7 1347 345 100 0 0 chr5 99978926 99978976 -52558283 + (TA)n Simple_repeat Simple_repeat 1 50 0 7 1347 638 150 119 0 chr5 99978985 99979145 -52558114 + Lx9 LINE L1 7466 7644 0 7 1347 3633 13 0 0 chr5 99979255 99979651 -52557608 - MTA_Mm LTR MaLR 0 396 1 7 1347 564 202 0 0 chr5 99979957 99980066 -52557193 - PB1D9 SINE Alu -2 118 10 7 1347 291 228 12 60 chr5 99979991 99980075 -52557184 - B4A SINE B4 -123 169 90 7 1347 513 47 0 0 chr5 99980232 99980296 -52556963 + (TA)n Simple_repeat Simple_repeat 2 65 0 7 1347 711 213 56 129 chr5 99980321 99980341 -52556918 - B3 SINE B2 -1 215 197 7 1347 432 0 0 0 chr5 99980341 99980389 -52556870 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 7 1347 711 213 56 129 chr5 99980389 99980600 -52556659 - B3 SINE B2 -20 196 1 7 1347 549 0 0 0 chr5 99980689 99980750 -52556509 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 7 1347 238 364 86 0 chr5 99981894 99982056 -52555203 + MIR SINE MIR 35 210 -52 7 1347 747 238 166 13 chr5 99982447 99982733 -52554526 - MTD LTR MaLR 0 419 58 7 1347 234 259 53 121 chr5 99982734 99982866 -52554393 - MTD LTR MaLR -283 138 16 7 1347 311 96 19 0 chr5 99982963 99983015 -52554244 + (CGGGGG)n Simple_repeat Simple_repeat 2 54 0 7 1347 207 93 22 44 chr5 99983316 99983361 -52553898 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 7 1347 5241 102 4 8 chr5 99983366 99983382 -52553877 - Lx3A LINE L1 0 6981 6969 7 1347 207 0 0 0 chr5 99983382 99983405 -52553854 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7 1347 5241 102 4 8 chr5 99983405 99984143 -52553116 - Lx3A LINE L1 -13 6968 6230 7 1347 1076 170 20 25 chr5 99984649 99984848 -52552411 + B3 SINE B2 9 206 -10 7 1347 180 380 26 13 chr5 99985664 99985816 -52551443 + L2 LINE L2 2258 2411 -1008 7 1347 208 280 139 10 chr5 99986507 99986608 -52550651 - MIR SINE MIR -34 228 115 7 1347 336 24 0 0 chr5 99988437 99988478 -52548781 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1347 326 407 13 49 chr5 99988844 99989069 -52548190 - MER20 DNA MER1_type 0 219 3 7 1347 401 327 12 24 chr5 99989314 99989480 -52547779 + RSINE1 SINE B4 1 164 -1 7 1347 495 60 0 0 chr5 99989486 99989553 -52547706 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 1347 779 297 28 28 chr5 99989794 99990085 -52547174 - B4A SINE B4 -1 291 1 7 1347 21 0 0 0 chr5 99991036 99991057 -52546202 + AT_rich Low_complexity Low_complexity 1 21 0 7 1347 301 320 89 8 chr5 99991202 99991325 -52545934 - LTR16A LTR ERVL -65 386 254 7 1347 538 338 51 92 chr5 99991909 99992245 -52545014 - MLT2B3 LTR ERVL -13 541 220 7 1347 379 113 0 27 chr5 99992245 99992318 -52544941 + (AGGGGG)n Simple_repeat Simple_repeat 6 76 0 7 1347 345 267 56 0 chr5 99992318 99992408 -52544851 - MLT2B3 LTR ERVL -322 232 138 7 1347 21 0 0 0 chr5 99994626 99994647 -52542612 + AT_rich Low_complexity Low_complexity 1 21 0 7 1347 946 274 115 52 chr5 99994744 99995046 -52542213 - Lx7 LINE L1 -1793 5903 5544 7 1347 1107 68 7 33 chr5 99995046 99995198 -52542061 - B1_Mus1 SINE Alu 0 148 1 7 1347 946 272 110 59 chr5 99995198 99995549 -52541710 - Lx7 LINE L1 -304 5543 5162 7 1347 917 310 78 114 chr5 99995532 99995977 -52541282 + L1M2 LINE L1 4011 4451 -1692 7 1347 1314 82 0 0 chr5 99995977 99996519 -52540740 + (TG)n Simple_repeat Simple_repeat 1 542 0 7 1347 917 310 78 114 chr5 99996519 99996531 -52540728 + L1M2 LINE L1 4452 4452 -1691 7 1347 1347 72 0 0 chr5 99996531 99996711 -52540548 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1347 917 310 78 114 chr5 99996711 99997498 -52539761 + L1M2 LINE L1 4452 5216 -927 7 1347 268 241 254 7 chr5 99998055 99998197 -52539062 + MLT1C LTR MaLR 291 467 0 7 1347 477 319 162 12 chr5 99998245 99998486 -52538773 - MER58B DNA MER1_type -20 321 45 7 1347 183 129 0 0 chr5 99998522 99998553 -52538706 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1347 589 7 163 0 chr5 99999232 99999367 -52537892 + GA-rich Low_complexity Low_complexity 4 160 0 7 1347 23 0 0 0 chr5 99999929 99999952 -52537307 + GC_rich Low_complexity Low_complexity 1 23 0 7 1347 345 197 0 0 chr5 100000306 100000377 -52536882 + CT-rich Low_complexity Low_complexity 3 73 0 1 1347 277 186 14 14 chr5 100001303 100001374 -52535885 + CT-rich Low_complexity Low_complexity 3 73 0 2 1347 611 161 0 27 chr5 100001376 100001400 -52535859 + polypyrimidine Low_complexity Low_complexity 157 180 0 3 1347 1107 84 0 0 chr5 100001400 100001578 -52535681 + (TCC)n Simple_repeat Simple_repeat 3 180 0 4 1347 611 161 0 27 chr5 100001578 100001628 -52535631 + polypyrimidine Low_complexity Low_complexity 107 156 0 5 1347 1104 94 0 0 chr5 100001628 100002142 -52535117 + (TCC)n Simple_repeat Simple_repeat 1 514 0 6 1347 611 161 0 27 chr5 100002142 100002243 -52535016 + polypyrimidine Low_complexity Low_complexity 7 106 0 7 1347 427 223 89 16 chr5 100002359 100002482 -52534777 + MT2B LTR ERVL 1 132 -401 8 1347 441 214 0 0 chr5 100002600 100002698 -52534561 + (CA)n Simple_repeat Simple_repeat 1 98 0 9 1347 412 167 66 11 chr5 100002720 100002811 -52534448 + URR1B DNA MER1_type 32 127 -98 1 1347 836 114 26 13 chr5 100002810 100002961 -52534298 + URR1B DNA MER1_type 73 225 0 1 1347 727 242 21 99 chr5 100002966 100003209 -52534050 + MT2B LTR ERVL 317 540 -61 8 1347 303 28 0 0 chr5 100003209 100003245 -52534014 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1347 195 42 0 0 chr5 100003245 100003268 -52533991 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1347 388 212 25 42 chr5 100003299 100003417 -52533842 - URR1B DNA MER1_type 0 225 110 1 1347 193 346 108 19 chr5 100003907 100004119 -52533140 + L2 LINE L2 2356 2586 -833 1 1347 610 189 0 0 chr5 100004142 100004253 -52533006 - ORR1B2 LTR MaLR -8 359 249 1 1347 22 0 0 0 chr5 100004917 100004939 -52532320 + AT_rich Low_complexity Low_complexity 1 22 0 1 1347 369 0 0 0 chr5 100005690 100005731 -52531528 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1347 468 51 0 0 chr5 100005731 100005790 -52531469 + (TA)n Simple_repeat Simple_repeat 2 60 0 1 1347 360 281 0 0 chr5 100006125 100006264 -52530995 + (TG)n Simple_repeat Simple_repeat 2 140 0 1 1347 220 163 0 39 chr5 100006264 100006315 -52530944 + T-rich Low_complexity Low_complexity 5 53 0 2 1347 556 157 0 43 chr5 100007364 100007384 -52529875 + L1_Mus3 LINE L1 6183 6199 -439 2 1347 2930 67 8 5 chr5 100007384 100007776 -52529483 - L1_Mus3 LINE L1 -1 6637 6245 2 1347 556 157 0 43 chr5 100007776 100007848 -52529411 + L1_Mus3 LINE L1 6200 6271 -367 2 1348 229 348 96 0 chr5 100008163 100008278 -52528981 - MIR3 SINE MIR -10 198 73 2 1348 25 0 0 0 chr5 100008559 100008584 -52528675 + AT_rich Low_complexity Low_complexity 1 25 0 2 1348 370 135 10 78 chr5 100009984 100010177 -52527082 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1348 451 115 36 48 chr5 100010218 100010383 -52526876 + (TA)n Simple_repeat Simple_repeat 2 164 0 2 1348 2063 158 95 9 chr5 100011616 100012039 -52525220 - RMER4A LTR ERVK 0 466 8 2 1348 423 56 0 0 chr5 100012479 100012533 -52524726 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 2 1348 203 62 0 30 chr5 100012535 100012568 -52524691 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 2 1348 901 51 0 0 chr5 100012578 100012696 -52524563 - B1_Mus2 SINE Alu -6 141 24 2 1348 891 70 53 0 chr5 100013768 100013939 -52523320 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 1348 1132 82 45 0 chr5 100013952 100014219 -52523040 + (TAGA)n Simple_repeat Simple_repeat 1 279 0 3 1348 817 257 142 8 chr5 100015414 100015661 -52521598 + B4A SINE B4 2 281 -11 3 1348 198 0 0 0 chr5 100015688 100015710 -52521549 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1348 277 157 0 43 chr5 100015711 100015804 -52521455 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 3 1348 3137 101 13 2 chr5 100016600 100017047 -52520212 + Lx2A LINE L1 6543 6994 -14 3 1348 186 43 0 0 chr5 100017047 100017070 -52520189 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 3 1348 189 337 51 0 chr5 100017131 100017229 -52520030 - MIR SINE MIR -139 123 21 3 1348 667 261 140 8 chr5 100019082 100019318 -52517941 + B4A SINE B4 26 292 0 3 1348 460 357 0 0 chr5 100019487 100019655 -52517604 + (TG)n Simple_repeat Simple_repeat 1 168 0 3 1348 632 285 12 0 chr5 100019672 100019844 -52517415 - B4 SINE B4 -117 175 2 3 1348 411 272 42 58 chr5 100021023 100021232 -52516027 - MLT1A1 LTR MaLR -155 210 3 4 1348 866 245 14 14 chr5 100021572 100021787 -52515472 + B3 SINE B2 2 216 0 4 1348 677 165 0 0 chr5 100022367 100022476 -52514783 - B3 SINE B2 -93 123 15 4 1348 22 70 0 0 chr5 100022690 100022733 -52514526 + AT_rich Low_complexity Low_complexity 1 43 0 4 1348 697 199 147 89 chr5 100022901 100023160 -52514099 - B4A SINE B4 -16 276 3 4 1348 940 228 6 0 chr5 100023187 100023367 -52513892 + B3A SINE B2 1 181 -17 4 1348 336 360 104 14 chr5 100023390 100023745 -52513514 + L1ME2 LINE L1 4699 5085 -1061 4 1348 301 346 37 8 chr5 100023998 100024132 -52513127 + MER63A DNA AcHobo 3 140 -70 4 1348 189 213 0 0 chr5 100024165 100024212 -52513047 + CT-rich Low_complexity Low_complexity 1 47 0 4 1348 332 311 70 48 chr5 100024318 100024504 -52512755 + L1ME2 LINE L1 5671 5860 -304 4 1348 498 287 118 16 chr5 100024513 100024768 -52512491 + L1MA4A LINE L1 5749 6029 -274 4 1348 227 200 76 15 chr5 100024925 100024991 -52512268 + L1ME2 LINE L1 6031 6100 -344 4 1348 185 180 0 20 chr5 100025369 100025420 -52511839 + G-rich Low_complexity Low_complexity 2 51 0 5 1348 331 293 42 17 chr5 100025497 100025615 -52511644 - MER45A DNA Tip100 -14 164 44 5 1348 3360 208 45 49 chr5 100025598 100026499 -52510760 - RMER17B LTR ERVK -60 898 1 5 1348 387 0 0 0 chr5 100027229 100027272 -52509987 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1348 25 0 0 0 chr5 100028173 100028198 -52509061 + AT_rich Low_complexity Low_complexity 1 25 0 5 1348 233 316 128 58 chr5 100028274 100028462 -52508797 + MIRb SINE MIR 22 222 -46 5 1348 234 0 0 0 chr5 100028476 100028502 -52508757 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1348 306 0 0 0 chr5 100029286 100029320 -52507939 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1348 410 245 118 7 chr5 100029525 100029669 -52507590 - MER5A1 DNA MER1_type -6 160 1 5 1348 436 97 14 0 chr5 100030767 100030839 -52506420 - URR1B DNA MER1_type -67 158 86 5 1348 1529 279 83 15 chr5 100032618 100033208 -52504051 - L1MA5 LINE L1 0 6300 5671 6 1348 2629 224 31 67 chr5 100033441 100034441 -52502818 + RMER17B LTR ERVK 1 907 -1 6 1348 206 57 0 54 chr5 100036334 100036371 -52500888 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 6 1348 227 190 33 49 chr5 100036554 100036615 -52500644 + CT-rich Low_complexity Low_complexity 5 64 0 6 1348 361 296 14 43 chr5 100037122 100037260 -52499999 + RSINE1 SINE B4 3 136 -29 6 1348 265 159 32 0 chr5 100037261 100037324 -52499935 + C-rich Low_complexity Low_complexity 4 68 0 6 1348 270 73 0 0 chr5 100037332 100037373 -52499886 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 6 1348 263 197 0 38 chr5 100037388 100037467 -52499792 + (TA)n Simple_repeat Simple_repeat 1 76 0 6 1348 21 0 0 0 chr5 100038842 100038863 -52498396 + AT_rich Low_complexity Low_complexity 1 21 0 6 1348 207 0 0 0 chr5 100038894 100038917 -52498342 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1348 820 295 75 25 chr5 100041464 100041742 -52495517 + B4A SINE B4 1 292 0 7 1348 209 108 27 0 chr5 100041767 100041804 -52495455 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1348 405 0 0 0 chr5 100041974 100042019 -52495240 + (TAA)n Simple_repeat Simple_repeat 1 45 0 7 1348 614 50 30 10 chr5 100042124 100042224 -52495035 + L1Md_F3 LINE L1 6482 6583 -1 7 1348 243 146 0 0 chr5 100043381 100043422 -52493837 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7 1348 360 0 0 0 chr5 100043573 100043613 -52493646 + (GA)n Simple_repeat Simple_repeat 1 40 0 7 1348 242 280 56 62 chr5 100044214 100044374 -52492885 + HAL1 LINE L1 795 953 -1554 7 1348 596 309 147 68 chr5 100044468 100044972 -52492287 + Lx8 LINE L1 6930 7473 0 7 1348 687 285 171 0 chr5 100045261 100045535 -52491724 + Lx8 LINE L1 7142 7462 -11 7 1348 228 346 123 31 chr5 100045609 100045710 -52491549 + HAL1 LINE L1 1147 1267 -1240 7 1348 1485 159 48 74 chr5 100045710 100046130 -52491129 + RMER17C LTR ERVK 1 409 -1 7 1348 228 346 123 31 chr5 100046130 100046514 -52490745 + HAL1 LINE L1 1268 1677 -830 7 1348 261 75 0 0 chr5 100046828 100046868 -52490391 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 8 1348 198 0 0 0 chr5 100046935 100046957 -52490302 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1348 797 181 84 76 chr5 100046967 100047230 -52490029 + RMER10B LTR ERVL 1 265 -133 8 1348 294 95 0 0 chr5 100047230 100047272 -52489987 + (TCTCC)n Simple_repeat Simple_repeat 2 43 0 8 1348 813 170 46 110 chr5 100047272 100047490 -52489769 + RMER10B LTR ERVL 195 398 0 8 1348 200 217 0 0 chr5 100047499 100047545 -52489714 + A-rich Low_complexity Low_complexity 1 46 0 8 1348 222 37 0 0 chr5 100047703 100047730 -52489529 + (TTAG)n Simple_repeat Simple_repeat 4 30 0 8 1348 426 301 60 0 chr5 100047744 100047877 -52489382 - RSINE1 SINE B4 -13 152 12 8 1348 222 37 0 0 chr5 100050498 100050525 -52486734 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 8 1348 392 241 28 55 chr5 100050757 100050902 -52486357 + RLTR23 LTR ERV1 286 426 -4 8 1348 399 291 148 51 chr5 100051050 100051401 -52485858 + MLT1A1 LTR MaLR 24 408 0 9 1348 471 296 188 12 chr5 100054886 100055136 -52482123 - MLT1D LTR MaLR -123 382 89 9 1348 405 0 0 0 chr5 100056225 100056270 -52480989 + (TC)n Simple_repeat Simple_repeat 1 45 0 9 1348 24 67 0 0 chr5 100057489 100057534 -52479725 + AT_rich Low_complexity Low_complexity 1 45 0 9 1348 635 155 123 8 chr5 100057537 100057667 -52479592 - B3 SINE B2 -11 205 61 9 1348 522 232 66 66 chr5 100058349 100058547 -52478712 + B3A SINE B2 1 198 0 9 1348 236 107 0 51 chr5 100058587 100058646 -52478613 + A-rich Low_complexity Low_complexity 1 56 0 9 1348 506 232 100 62 chr5 100058923 100059271 -52477988 + L1MC2 LINE L1 5104 5478 -855 9 1348 531 330 48 67 chr5 100059324 100059532 -52477727 + B4A SINE B4 87 290 -2 9 1348 223 191 14 14 chr5 100059540 100059609 -52477650 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1348 1090 260 92 27 chr5 100059617 100059668 -52477591 + L1MC2 LINE L1 5600 5658 -686 9 1348 521 30 15 0 chr5 100059668 100059735 -52477524 + (GAAA)n Simple_repeat Simple_repeat 3 70 0 1 1348 1090 260 92 27 chr5 100059735 100060086 -52477173 + L1MC2 LINE L1 5659 6028 -316 9 1348 285 98 0 0 chr5 100060086 100060127 -52477132 + (GGGGA)n Simple_repeat Simple_repeat 1 41 0 1 1348 186 103 0 0 chr5 100060427 100060456 -52476803 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 1 1348 711 299 40 15 chr5 100060477 100060749 -52476510 + L1MC2 LINE L1 6053 6331 -2 9 1348 518 271 52 15 chr5 100060853 100060988 -52476271 - ID_B1 SINE B4 0 224 85 1 1348 180 0 0 0 chr5 100061689 100061709 -52475550 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1348 2182 202 7 17 chr5 100062656 100063073 -52474186 - MTC LTR MaLR -8 413 1 1 1348 276 241 140 46 chr5 100063154 100063286 -52473973 + MIRb SINE MIR 31 174 -94 1 1348 183 100 0 0 chr5 100063621 100063651 -52473608 + (CCCCCT)n Simple_repeat Simple_repeat 2 31 0 1 1348 218 306 0 0 chr5 100064186 100064249 -52473010 + C-rich Low_complexity Low_complexity 1 63 0 1 1348 888 151 6 11 chr5 100064249 100064430 -52472829 + CT-rich Low_complexity Low_complexity 1 180 0 1 1348 594 0 0 0 chr5 100064430 100064496 -52472763 + (TTC)n Simple_repeat Simple_repeat 3 68 0 1 1348 411 134 0 0 chr5 100064496 100064578 -52472681 + (TC)n Simple_repeat Simple_repeat 1 82 0 1 1348 629 278 49 12 chr5 100064579 100064743 -52472516 - B3A SINE B2 -28 170 1 1 1348 255 292 56 19 chr5 100064792 100064900 -52472359 - MIRb SINE MIR -19 249 138 1 1348 366 143 37 19 chr5 100065440 100065547 -52471712 + GA-rich Low_complexity Low_complexity 5 113 0 1 1348 1345 66 44 0 chr5 100066185 100066366 -52470893 + B2_Mm2 SINE B2 2 190 -5 1 1348 622 305 172 32 chr5 100066544 100066944 -52470315 - Charlie1a DNA MER1_type -10 1445 990 1 1348 295 232 14 14 chr5 100066944 100067014 -52470245 + MLT1B LTR MaLR 147 216 -174 1 1348 229 351 61 9 chr5 100067154 100067269 -52469990 + MLT1B LTR MaLR 288 408 0 1 1348 268 226 52 78 chr5 100067496 100067585 -52469674 - MTE2a LTR MaLR -2 377 290 1 1348 296 212 24 0 chr5 100067678 100067763 -52469496 + GA-rich Low_complexity Low_complexity 5 91 0 1 1348 905 219 8 50 chr5 100067794 100068034 -52469225 + Lx6 LINE L1 7228 7457 -3 1 1348 345 295 29 79 chr5 100068125 100068265 -52468994 - MLT1A1 LTR MaLR -275 133 1 1 1348 1944 157 138 3 chr5 100069640 100070011 -52467248 - MTC LTR MaLR 0 421 1 1 1348 28 29 0 0 chr5 100070118 100070153 -52467106 + AT_rich Low_complexity Low_complexity 1 35 0 1 1348 295 333 55 43 chr5 100070234 100070397 -52466862 - MIR SINE MIR -95 173 9 1 1348 549 30 0 0 chr5 100070815 100070882 -52466377 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1348 312 235 62 80 chr5 100074076 100074238 -52463021 - L1MC4 LINE L1 -1075 6967 6809 1 1348 299 275 117 23 chr5 100074279 100074450 -52462809 - L1MC4 LINE L1 -1224 6658 6472 1 1348 2248 206 30 66 chr5 100074707 100075210 -52462049 + RMER15 LTR ERVL 1 485 -90 1 1348 788 75 0 61 chr5 100075233 100075447 -52461812 + (TG)n Simple_repeat Simple_repeat 1 200 0 1 1348 583 109 67 0 chr5 100075490 100075655 -52461604 + (TG)n Simple_repeat Simple_repeat 2 177 0 1 1348 258 140 39 20 chr5 100075662 100075713 -52461546 + RMER15 LTR ERVL 524 575 0 1 1348 243 365 31 0 chr5 100076688 100076784 -52460475 - MIR SINE MIR -133 129 31 1 1348 622 296 58 9 chr5 100076929 100077154 -52460105 - L1MB2 LINE L1 -108 6063 5828 1 1348 234 0 0 0 chr5 100077154 100077180 -52460079 + (CAAAAA)n Simple_repeat Simple_repeat 6 31 0 1 1348 330 87 0 0 chr5 100079786 100079832 -52457427 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1348 1103 244 168 8 chr5 100079984 100080336 -52456923 - MTD LTR MaLR 0 419 12 1 1348 189 0 0 0 chr5 100080336 100080357 -52456902 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1348 1305 214 164 22 chr5 100080497 100080903 -52456356 + Lx8 LINE L1 6231 6709 -764 1 1348 1575 193 83 131 chr5 100080923 100081194 -52456065 + RLTR20A1 LTR ERVK 1 271 -280 1 1348 1190 34 0 26 chr5 100081194 100081346 -52455913 + B1_Mus1 SINE Alu 1 148 0 1 1348 1575 193 83 131 chr5 100081346 100081630 -52455629 + RLTR20A1 LTR ERVK 272 529 -22 1 1348 21 0 0 0 chr5 100082629 100082650 -52454609 + AT_rich Low_complexity Low_complexity 1 21 0 1 1348 468 211 21 66 chr5 100083366 100083481 -52453778 + B1F SINE Alu 10 119 -30 1 1348 2004 117 13 67 chr5 100083481 100083931 -52453328 - ORR1A2 LTR MaLR 0 327 1 1 1348 803 271 95 46 chr5 100084275 100084538 -52452721 + B4A SINE B4 2 277 -15 1 1348 309 179 12 23 chr5 100084550 100084636 -52452623 + C-rich Low_complexity Low_complexity 2 86 0 1 1348 348 315 13 124 chr5 100085608 100085833 -52451426 + MIRb SINE MIR 32 231 -37 1 1348 345 133 40 0 chr5 100086317 100086392 -52450867 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1348 702 333 68 35 chr5 100087256 100087714 -52449545 + MER110-int LTR ERV1 4168 4640 -7 1 1348 562 277 194 16 chr5 100087888 100088130 -52449129 + B4 SINE B4 1 285 -7 1 1348 693 34 0 0 chr5 100088152 100088240 -52449019 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1348 387 173 237 125 chr5 100088309 100088461 -52448798 + B3A SINE B2 21 189 -9 1 1348 554 277 87 7 chr5 100089204 100089353 -52447906 + RSINE1 SINE B4 5 165 0 1 1348 611 228 0 6 chr5 100089367 100089548 -52447711 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1348 255 203 0 0 chr5 100089566 100089625 -52447634 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1348 469 336 157 14 chr5 100090393 100090680 -52446579 + LTR33 LTR ERVL 37 364 -151 1 1348 226 304 235 0 chr5 100090755 100090766 -52446493 + B4A SINE B4 84 224 -67 1 1348 462 265 10 10 chr5 100090766 100090869 -52446390 + PB1D10 SINE Alu 10 112 -5 1 1348 186 43 0 0 chr5 100092116 100092139 -52445120 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1348 558 281 7 52 chr5 100092420 100092574 -52444685 - RSINE1 SINE B4 -16 149 3 1 1348 372 98 0 0 chr5 100093073 100093124 -52444135 - HAL1-3A_ME LINE L1 -831 2027 1977 1 1348 563 164 7 0 chr5 100093132 100093284 -52443975 + (TG)n Simple_repeat Simple_repeat 1 153 0 1 1348 180 0 0 0 chr5 100094561 100094581 -52442678 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1348 423 0 0 0 chr5 100095164 100095211 -52442048 + (CATAT)n Simple_repeat Simple_repeat 2 48 0 1 1348 294 95 0 0 chr5 100095315 100095357 -52441902 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1 1348 7781 132 24 9 chr5 100097086 100098348 -52438911 - Lx4B LINE L1 0 7058 5778 1 1348 259 246 45 15 chr5 100098597 100098663 -52438596 - LTR86A2 LTR ERVL -415 93 26 1 1348 619 196 0 0 chr5 100100441 100100548 -52436711 + MT2A LTR ERVL 1 107 -426 1 1348 734 169 0 6 chr5 100100548 100100715 -52436544 + (TG)n Simple_repeat Simple_repeat 1 166 0 1 1348 244 103 34 17 chr5 100100722 100100781 -52436478 + MT2A LTR ERVL 466 525 -8 1 1348 215 248 149 26 chr5 100100795 100100911 -52436348 + MIRc SINE MIR 15 151 -117 1 1348 1026 134 37 58 chr5 100100916 100101106 -52436153 + B2_Mm2 SINE B2 2 187 -8 1 1348 1436 224 114 3 chr5 100101171 100101521 -52435738 - MTD LTR MaLR -13 406 18 1 1348 1371 207 171 9 chr5 100101894 100102216 -52435043 + ORR1D1 LTR MaLR 1 374 0 1 1348 841 241 39 0 chr5 100102239 100102446 -52434813 - B3 SINE B2 0 216 2 1 1348 294 225 5 68 chr5 100103031 100103222 -52434037 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 1 1348 196 250 132 111 chr5 100103528 100103672 -52433587 + MIRb SINE MIR 23 169 -99 1 1348 358 198 161 0 chr5 100104315 100104396 -52432863 + B1_Mur2 SINE Alu 54 147 -2 1 1348 296 281 79 75 chr5 100105398 100105444 -52431815 + B4A SINE B4 63 102 -190 1 1348 411 73 0 0 chr5 100105444 100105499 -52431760 + (TGG)n Simple_repeat Simple_repeat 2 56 0 1 1348 685 122 68 17 chr5 100105499 100105616 -52431643 + B1_Mm SINE Alu 18 140 -7 1 1348 296 281 79 75 chr5 100105616 100105679 -52431580 + B4A SINE B4 103 290 -2 1 1348 375 78 0 0 chr5 100108084 100108135 -52429124 + (GGA)n Simple_repeat Simple_repeat 2 52 0 1 1348 21 0 0 0 chr5 100108766 100108787 -52428472 + AT_rich Low_complexity Low_complexity 1 21 0 1 1348 288 0 0 0 chr5 100109554 100109586 -52427673 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1348 324 259 23 12 chr5 100109746 100109832 -52427427 - MTEb LTR MaLR -14 365 279 1 1348 264 268 42 14 chr5 100110078 100110150 -52427109 - MLT1A1 LTR MaLR -298 110 37 1 1348 315 0 0 0 chr5 100110155 100110190 -52427069 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1348 222 228 20 10 chr5 100110192 100110294 -52426965 + (TA)n Simple_repeat Simple_repeat 1 103 0 1 1348 309 51 0 0 chr5 100110327 100110366 -52426893 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1348 441 54 0 0 chr5 100111624 100111680 -52425579 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 1 1348 730 215 134 0 chr5 100114454 100114640 -52422619 + B3 SINE B2 1 211 -5 1 1348 27 73 0 0 chr5 100115630 100115685 -52421574 + AT_rich Low_complexity Low_complexity 1 55 0 1 1348 210 224 0 0 chr5 100116032 100116081 -52421178 + A-rich Low_complexity Low_complexity 1 49 0 1 1348 270 73 0 0 chr5 100116712 100116753 -52420506 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1348 442 257 10 0 chr5 100117436 100117537 -52419722 - PB1D10 SINE Alu -9 108 7 1 1348 399 73 0 0 chr5 100119664 100119719 -52417540 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1348 282 211 93 21 chr5 100119740 100119837 -52417422 - PB1 SINE Alu 0 127 24 1 1348 753 240 275 0 chr5 100119912 100120141 -52417118 + B4A SINE B4 1 292 0 1 1348 294 29 0 0 chr5 100120152 100120187 -52417072 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1348 964 245 97 27 chr5 100120374 100120705 -52416554 + ORR1E LTR MaLR 1 354 -5 1 1348 506 283 131 14 chr5 100120902 100121124 -52416135 + B4A SINE B4 45 292 0 1 1348 192 284 0 0 chr5 100121184 100121279 -52415980 + (CA)n Simple_repeat Simple_repeat 1 95 0 1 1348 510 259 3 0 chr5 100121359 100121665 -52415594 + (CA)n Simple_repeat Simple_repeat 1 307 0 1 1348 688 265 122 11 chr5 100121729 100122015 -52415244 + MLT1D LTR MaLR 188 505 0 1 1348 725 321 96 92 chr5 100122045 100122629 -52414630 - MER34A1 LTR ERV1 -1 586 1 2 1348 648 48 0 0 chr5 100122831 100122915 -52414344 + (TG)n Simple_repeat Simple_repeat 2 85 0 2 1348 436 274 0 0 chr5 100122956 100123040 -52414219 - RSINE1 SINE B4 -79 86 3 2 1348 343 275 48 144 chr5 100123153 100123361 -52413898 + ID_B1 SINE B4 9 196 -28 2 1348 495 87 0 0 chr5 100123370 100123439 -52413820 + (TATG)n Simple_repeat Simple_repeat 3 71 0 2 1348 186 43 0 0 chr5 100123919 100123942 -52413317 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1348 447 19 0 0 chr5 100124703 100124755 -52412504 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1348 2270 87 14 61 chr5 100125108 100125453 -52411806 - ORR1A4 LTR MaLR 0 329 1 2 1348 621 72 0 0 chr5 100125521 100125604 -52411655 + (GGA)n Simple_repeat Simple_repeat 3 85 0 2 1348 204 120 60 0 chr5 100125604 100125654 -52411605 + GA-rich Low_complexity Low_complexity 5 57 0 2 1348 2490 86 6 0 chr5 100125914 100126239 -52411020 + ORR1A2 LTR MaLR 1 327 0 2 1348 3766 103 82 2 chr5 100127695 100128268 -52408991 + Lx2 LINE L1 6378 6996 -1 2 1348 34 24 0 0 chr5 100129242 100129283 -52407976 + AT_rich Low_complexity Low_complexity 1 41 0 2 1348 237 356 109 32 chr5 100129283 100129567 -52407692 + HAL1 LINE L1 1550 1855 -652 2 1348 423 0 0 0 chr5 100129696 100129743 -52407516 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1348 1328 98 0 24 chr5 100130376 100130586 -52406673 - ORR1A2 LTR MaLR 0 327 123 2 1348 273 300 0 0 chr5 100130797 100130867 -52406392 + ID4_ SINE ID 3 72 -11 2 1348 216 0 0 0 chr5 100131492 100131516 -52405743 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2 1348 501 226 71 106 chr5 100131748 100131946 -52405313 - B3A SINE B2 0 198 8 2 1348 705 214 3 0 chr5 100131951 100132304 -52404955 + (CA)n Simple_repeat Simple_repeat 1 354 0 2 1348 217 224 52 0 chr5 100132460 100132518 -52404741 - PB1D7 SINE Alu -7 113 53 2 1348 906 150 220 0 chr5 100133044 100133217 -52404042 + B3 SINE B2 1 211 -5 2 1348 367 310 78 91 chr5 100133604 100133728 -52403531 + L1MEc LINE L1 61 157 -6243 2 1348 1213 55 0 0 chr5 100133728 100133874 -52403385 - B1_Mus2 SINE Alu 0 147 2 2 1348 367 310 78 91 chr5 100133874 100134146 -52403113 + L1MEc LINE L1 158 452 -5948 2 1348 260 293 70 35 chr5 100134396 100134653 -52402606 + L1MEc LINE L1 5257 5532 -787 2 1348 218 307 107 0 chr5 100134701 100134776 -52402483 + PB1 SINE Alu 34 116 -11 2 1348 668 344 44 0 chr5 100134815 100135158 -52402101 + L1ME1 LINE L1 5506 5863 -316 2 1348 333 0 0 0 chr5 100135213 100135250 -52402009 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2 1348 351 0 0 0 chr5 100135725 100135764 -52401495 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1348 310 161 113 0 chr5 100137401 100137463 -52399796 + Lx9 LINE L1 7401 7469 -175 2 1348 480 35 0 0 chr5 100137468 100137526 -52399733 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1348 373 176 110 9 chr5 100137527 100137636 -52399623 + Lx9 LINE L1 7518 7637 -7 2 1348 285 159 0 0 chr5 100137750 100137813 -52399446 + GA-rich Low_complexity Low_complexity 2 64 0 2 1348 739 226 0 63 chr5 100138439 100138614 -52398645 + RSINE1 SINE B4 2 165 0 2 1349 264 331 55 55 chr5 100139529 100139711 -52397548 + MLT1A0 LTR MaLR 7 188 -177 2 1349 338 253 10 10 chr5 100139807 100139903 -52397356 + B1F SINE Alu 33 128 -21 2 1349 253 312 110 44 chr5 100139962 100140190 -52397069 - LTR33 LTR ERVL -31 484 242 2 1349 321 300 20 0 chr5 100140266 100140366 -52396893 + RMER12 LTR ERVK 750 851 -471 2 1349 266 118 39 0 chr5 100140366 100140417 -52396842 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 2 1349 390 176 0 0 chr5 100141934 100142019 -52395240 + (CA)n Simple_repeat Simple_repeat 2 86 0 2 1349 581 234 27 20 chr5 100142070 100142218 -52395041 + RSINE1 SINE B4 17 165 0 2 1349 262 289 76 34 chr5 100142364 100142482 -52394777 - MIR SINE MIR -88 174 52 2 1349 414 293 65 22 chr5 100143363 100143548 -52393711 - L1MA9 LINE L1 -122 6190 5998 2 1349 680 135 0 38 chr5 100143935 100144066 -52393193 - Lx2A1 LINE L1 -1 7007 6882 2 1349 637 298 59 82 chr5 100145068 100145926 -52391333 - L1MA5A LINE L1 -262 6038 5136 2 1349 485 237 67 37 chr5 100146329 100146493 -52390766 + Lx9 LINE L1 5714 5917 -1727 2 1349 1386 77 11 0 chr5 100146509 100146692 -52390567 - B2_Mm1t SINE B2 -7 186 2 2 1349 189 107 0 0 chr5 100148049 100148077 -52389182 + (CAT)n Simple_repeat Simple_repeat 1 28 0 2 1349 227 247 60 24 chr5 100148402 100148485 -52388774 - MIR SINE MIR -66 196 111 2 1349 782 150 18 56 chr5 100149052 100149296 -52387963 - URR1A DNA MER1_type -1 225 2 2 1349 24 0 0 0 chr5 100149566 100149590 -52387669 + AT_rich Low_complexity Low_complexity 1 24 0 2 1349 531 43 0 0 chr5 100150286 100150356 -52386903 + (GTTTG)n Simple_repeat Simple_repeat 2 71 0 2 1349 270 0 0 0 chr5 100150629 100150659 -52386600 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 2 1349 321 26 0 0 chr5 100151004 100151042 -52386217 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1349 22 0 0 0 chr5 100151360 100151382 -52385877 + AT_rich Low_complexity Low_complexity 1 22 0 2 1349 2063 194 95 22 chr5 100151383 100151648 -52385611 - Lx5 LINE L1 0 7050 6775 2 1349 2604 71 3 0 chr5 100151648 100151974 -52385285 + ORR1A2 LTR MaLR 1 327 0 2 1349 2063 198 93 29 chr5 100151974 100152169 -52385090 - Lx5 LINE L1 -276 6774 6575 2 1349 216 0 0 0 chr5 100152712 100152736 -52384523 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1349 1739 231 80 23 chr5 100153445 100153969 -52383290 + RLTR20B1 LTR ERVK 1 554 -9 2 1349 825 255 115 90 chr5 100154176 100154542 -52382717 - MTEa LTR MaLR -4 375 1 2 1349 267 313 13 27 chr5 100154607 100154729 -52382530 + MIRb SINE MIR 48 174 -94 2 1349 760 111 49 6 chr5 100155229 100155392 -52381867 + (CATA)n Simple_repeat Simple_repeat 1 170 0 2 1349 183 42 0 0 chr5 100156109 100156133 -52381126 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1349 200 31 0 59 chr5 100156683 100156717 -52380542 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 2 1349 249 98 0 0 chr5 100158279 100158320 -52378939 + (G)n Simple_repeat Simple_repeat 1 41 0 2 1349 357 24 0 0 chr5 100158968 100159010 -52378249 + (A)n Simple_repeat Simple_repeat 1 42 0 2 1349 4821 15 2 0 chr5 100159264 100159801 -52377458 + MERVL-int LTR ERVL 23 560 -4925 2 1349 21 0 0 0 chr5 100159923 100159944 -52377315 + AT_rich Low_complexity Low_complexity 1 21 0 2 1349 230 261 68 0 chr5 100159959 100160047 -52377212 - MLT1E2 LTR MaLR -308 319 226 2 1349 354 247 11 22 chr5 100160995 100161177 -52376082 + GA-rich Low_complexity Low_complexity 1 180 0 2 1349 226 93 56 0 chr5 100162099 100162153 -52375106 + (TTTTTG)n Simple_repeat Simple_repeat 4 60 0 2 1349 475 277 23 76 chr5 100162456 100162628 -52374631 + ID_B1 SINE B4 53 215 -9 2 1349 2373 121 26 8 chr5 100162698 100163080 -52374179 - Lx2 LINE L1 -6 6991 6603 2 1349 889 203 105 21 chr5 100163089 100163280 -52373979 - B3 SINE B2 -9 207 1 2 1349 22 35 0 0 chr5 100163392 100163421 -52373838 + AT_rich Low_complexity Low_complexity 1 29 0 2 1349 240 100 0 0 chr5 100164161 100164201 -52373058 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1349 21 0 0 0 chr5 100164616 100164637 -52372622 + AT_rich Low_complexity Low_complexity 1 21 0 2 1349 690 281 79 36 chr5 100164828 100165108 -52372151 + B4A SINE B4 1 292 0 2 1349 186 103 0 0 chr5 100165109 100165138 -52372121 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1349 239 79 0 26 chr5 100166551 100166590 -52370669 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1349 240 35 0 0 chr5 100166921 100166950 -52370309 + (GAAAA)n Simple_repeat Simple_repeat 5 33 0 2 1349 248 282 28 14 chr5 100168114 100168186 -52369073 - LTR16C LTR ERVL -2 487 415 2 1349 855 132 37 0 chr5 100168404 100168540 -52368719 - ORR1C1 LTR MaLR 0 378 238 2 1349 3188 312 38 25 chr5 100169281 100170540 -52366719 - RodERV21-int LTR ERV1 -198 4793 3518 2 1349 1034 271 3 53 chr5 100172540 100172840 -52364419 + B4A SINE B4 4 288 -4 2 1349 282 106 0 0 chr5 100172866 100172913 -52364346 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1349 366 123 0 0 chr5 100173076 100173133 -52364126 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1349 282 301 34 50 chr5 100173891 100174010 -52363249 - MIRc SINE MIR -149 119 3 2 1349 22 0 0 0 chr5 100174332 100174354 -52362905 + AT_rich Low_complexity Low_complexity 1 22 0 2 1349 531 94 21 10 chr5 100174541 100174638 -52362621 + (CA)n Simple_repeat Simple_repeat 1 98 0 2 1349 279 0 0 0 chr5 100177346 100177377 -52359882 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1349 1575 47 0 10 chr5 100177887 100178082 -52359177 + B2_Mm1a SINE B2 1 193 0 2 1349 2587 68 9 0 chr5 100178991 100179315 -52357944 + ORR1A2 LTR MaLR 1 327 0 2 1349 741 189 18 16 chr5 100179395 100179554 -52357705 - MTC LTR MaLR -2 419 216 2 1349 1541 143 94 0 chr5 100179795 100180081 -52357178 + MTC LTR MaLR 1 313 -108 2 1349 265 229 0 0 chr5 100180818 100180879 -52356380 - MER53 DNA hAT 0 193 133 2 1349 1101 109 51 66 chr5 100181504 100181701 -52355558 + B2_Mm2 SINE B2 1 194 -1 2 1349 621 257 60 7 chr5 100181716 100181865 -52355394 + RSINE1 SINE B4 2 158 -7 2 1349 231 103 0 0 chr5 100181992 100182031 -52355228 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1349 467 200 0 0 chr5 100183864 100183949 -52353310 + B1_Mur3 SINE Alu 2 86 -63 2 1349 6899 55 0 10 chr5 100184122 100184987 -52352272 - L1_Mm LINE L1 -818 5065 4210 2 1349 303 49 0 0 chr5 100184989 100185030 -52352229 + (TA)n Simple_repeat Simple_repeat 2 42 0 2 1349 2886 90 2 5 chr5 100185031 100185434 -52351825 + L1Md_F2 LINE L1 6181 6582 0 3 1349 188 35 35 0 chr5 100185718 100185747 -52351512 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 3 1349 2313 109 33 51 chr5 100185747 100186142 -52351117 - Lx LINE L1 -33 6621 6234 3 1349 222 363 88 0 chr5 100186350 100186463 -52350796 - MER5A DNA MER1_type -9 180 58 3 1349 1789 156 146 9 chr5 100186571 100186900 -52350359 + ORR1D1 LTR MaLR 1 374 0 3 1349 21 62 0 44 chr5 100187133 100187166 -52350093 + AT_rich Low_complexity Low_complexity 1 31 0 3 1349 1198 68 0 0 chr5 100187166 100187312 -52349947 + B1_Mus2 SINE Alu 2 147 0 3 1349 21 62 0 44 chr5 100187312 100187346 -52349913 + AT_rich Low_complexity Low_complexity 1 34 0 3 1349 544 102 50 19 chr5 100187444 100187603 -52349656 + (TG)n Simple_repeat Simple_repeat 2 165 0 3 1349 226 242 30 50 chr5 100188288 100188388 -52348871 + L1M3 LINE L1 4944 5041 -1099 3 1349 284 246 0 0 chr5 100188575 100188632 -52348627 + RSINE1 SINE B4 65 121 -44 3 1349 450 0 0 0 chr5 100188639 100188689 -52348570 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1349 210 260 129 50 chr5 100189001 100189102 -52348157 + MIR SINE MIR 39 147 -115 3 1349 347 375 30 0 chr5 100189214 100189382 -52347877 - MamRep137 DNA TcMar? -106 338 166 3 1349 180 111 0 0 chr5 100189409 100189436 -52347823 + (GAA)n Simple_repeat Simple_repeat 2 28 0 3 1349 1242 100 0 0 chr5 100189438 100189618 -52347641 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 3 1349 693 192 157 54 chr5 100190163 100190297 -52346962 + URR1B DNA MER1_type 1 166 -59 3 1349 2810 179 113 20 chr5 100190297 100190854 -52346405 + RMER19C LTR ERVK 1 609 -2 3 1349 693 192 157 54 chr5 100190854 100190923 -52346336 + URR1B DNA MER1_type 167 225 0 3 1349 1823 187 22 3 chr5 100191088 100191447 -52345812 - ORR1D1 LTR MaLR -8 366 1 3 1349 361 344 154 45 chr5 100192010 100192150 -52345109 + ORR1E LTR MaLR 8 169 -190 3 1349 4034 135 113 0 chr5 100192150 100192811 -52344448 - RMER19A LTR ERVK 0 737 2 3 1349 361 344 154 45 chr5 100192811 100192981 -52344278 + ORR1E LTR MaLR 170 352 -7 3 1349 638 262 72 56 chr5 100193686 100193937 -52343322 + B4A SINE B4 15 269 -23 3 1349 382 268 57 82 chr5 100193926 100194048 -52343211 + RSINE1 SINE B4 47 165 0 3 1349 201 154 0 0 chr5 100194410 100194449 -52342810 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 1349 420 111 0 0 chr5 100194451 100194514 -52342745 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1349 276 143 28 14 chr5 100194559 100194630 -52342629 + GA-rich Low_complexity Low_complexity 1 72 0 3 1349 260 296 56 84 chr5 100194678 100194700 -52342559 - ID_B1 SINE B4 -23 201 99 3 1349 350 274 36 0 chr5 100194700 100194784 -52342475 - B1F2 SINE Alu -45 104 18 3 1349 272 342 63 44 chr5 100195729 100195888 -52341371 - MIRc SINE MIR -73 195 34 3 1349 23 0 0 0 chr5 100196600 100196623 -52340636 + GC_rich Low_complexity Low_complexity 1 23 0 3 1349 383 251 178 28 chr5 100197110 100197290 -52339969 + Lx8 LINE L1 7265 7471 -2 3 1349 229 313 0 0 chr5 100197231 100197298 -52339961 + RMER1C Other Other 1260 1326 -16 3 1349 407 162 12 0 chr5 100197454 100197534 -52339725 + GA-rich Low_complexity Low_complexity 4 84 0 3 1349 1410 199 50 14 chr5 100197577 100197934 -52339325 - ORR1C2-int LTR MaLR -1000 370 1 3 1349 1651 169 101 22 chr5 100197934 100198290 -52338969 - ORR1C2 LTR MaLR 0 384 1 3 1349 553 316 104 29 chr5 100198292 100198506 -52338753 + Lx8 LINE L1 7101 7333 -140 3 1349 234 0 0 0 chr5 100198506 100198532 -52338727 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1349 553 316 104 29 chr5 100198532 100198662 -52338597 + Lx8 LINE L1 7334 7471 -2 3 1349 741 192 63 46 chr5 100198696 100198871 -52338388 - Lx6 LINE L1 -11 7449 7272 3 1349 976 234 14 5 chr5 100198889 100199104 -52338155 - Lx6 LINE L1 -139 7321 7105 3 1349 3476 195 43 19 chr5 100199103 100199826 -52337433 + Lx6 LINE L1 6385 7124 -336 3 1349 6606 69 0 6 chr5 100199984 100200818 -52336441 + L1_Mus1 LINE L1 5739 6567 0 3 1349 405 0 0 0 chr5 100201057 100201102 -52336157 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1349 3650 93 63 17 chr5 100201317 100201428 -52335831 + RMER2 LTR ERV1 1 111 -456 3 1349 240 35 0 0 chr5 100201428 100201457 -52335802 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 3 1349 3650 93 63 17 chr5 100201457 100201883 -52335376 + RMER2 LTR ERV1 112 563 -4 3 1349 1662 36 0 5 chr5 100205440 100205636 -52331623 + B2_Mm2 SINE B2 1 195 0 3 1349 261 0 0 0 chr5 100206589 100206618 -52330641 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 3 1349 296 269 0 0 chr5 100206925 100206992 -52330267 - tRNA-Ala-GCA tRNA tRNA -8 67 1 3 1349 672 163 7 20 chr5 100208659 100208809 -52328450 + (TATG)n Simple_repeat Simple_repeat 3 150 0 3 1349 2226 127 28 2 chr5 100208809 100209304 -52327955 - RLTR20D LTR ERVK 0 568 3 3 1349 569 249 6 0 chr5 100209342 100209519 -52327740 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 3 1349 925 187 84 25 chr5 100209586 100209789 -52327470 + B3 SINE B2 2 216 0 3 1349 298 295 159 69 chr5 100209915 100210104 -52327155 + B4 SINE B4 2 207 -85 3 1349 416 280 47 111 chr5 100210244 100210497 -52326762 + RLTR26 LTR ERVK 199 435 -207 3 1349 231 154 0 0 chr5 100210633 100210672 -52326587 + B4 SINE B4 191 229 -63 3 1349 528 59 0 0 chr5 100210694 100210762 -52326497 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1349 474 284 83 28 chr5 100211824 100212005 -52325254 + L1M3 LINE L1 5436 5626 -557 3 1349 750 312 126 16 chr5 100212004 100212441 -52324818 + Lx8 LINE L1 6989 7473 0 3 1349 636 250 16 70 chr5 100212567 100212642 -52324617 + B3 SINE B2 2 76 -140 3 1349 3466 23 8 0 chr5 100212642 100213035 -52324224 - MTA_Mm LTR MaLR 0 396 1 3 1349 8745 55 13 5 chr5 100213035 100214124 -52323135 - MTA_Mm-int LTR MaLR 0 1098 1 3 1349 3426 40 2 0 chr5 100214124 100214519 -52322740 - MTA_Mm LTR MaLR 0 396 1 3 1349 636 250 16 70 chr5 100214519 100214626 -52322633 + B3 SINE B2 77 174 -42 3 1349 1067 101 0 0 chr5 100214655 100214794 -52322465 + B1_Mus1 SINE Alu 5 143 -5 3 1349 188 340 75 0 chr5 100215025 100215119 -52322140 + MIR SINE MIR 2 102 -160 3 1349 477 0 0 0 chr5 100215287 100215340 -52321919 + (CATTG)n Simple_repeat Simple_repeat 2 54 0 3 1349 297 0 0 0 chr5 100216793 100216826 -52320433 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1349 288 0 0 0 chr5 100217890 100217922 -52319337 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1349 225 264 0 0 chr5 100218101 100218173 -52319086 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1349 298 268 0 0 chr5 100218181 100218237 -52319022 - RSINE1 SINE B4 -94 71 16 3 1349 949 109 73 0 chr5 100218515 100218652 -52318607 - B1_Mus1 SINE Alu 0 148 2 3 1349 570 134 4 21 chr5 100218848 100218966 -52318293 - B1_Mus2 SINE Alu -1 119 2 3 1349 334 204 21 54 chr5 100218885 100218978 -52318281 - B4A SINE B4 -125 167 78 3 1349 2281 137 35 5 chr5 100220268 100220803 -52316456 - RMER19A LTR ERVK 0 737 143 3 1349 3769 193 62 45 chr5 100220803 100221910 -52315349 - Lx7 LINE L1 -1699 5997 4867 3 1349 4262 98 17 3 chr5 100222072 100222665 -52314594 - Lx4A LINE L1 0 7058 6458 3 1349 336 312 58 46 chr5 100222978 100223250 -52314009 + MER2 DNA MER2_type 5 331 -14 3 1349 273 128 0 0 chr5 100223335 100223382 -52313877 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 1349 2965 29 0 3 chr5 100223468 100223815 -52313444 + L1Md_A LINE L1 5241 5586 -297 3 1349 8598 29 4 0 chr5 100223815 100224807 -52312452 + L1Md_A LINE L1 5587 6582 0 3 1349 186 43 0 0 chr5 100224876 100224899 -52312360 + (G)n Simple_repeat Simple_repeat 1 23 0 3 1349 266 167 17 0 chr5 100224900 100224960 -52312299 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 3 1349 1712 131 104 3 chr5 100225081 100225379 -52311880 + ORR1C1 LTR MaLR 51 378 0 3 1349 192 181 74 27 chr5 100226940 100227088 -52310171 + (TATATG)n Simple_repeat Simple_repeat 4 158 0 3 1349 324 0 0 0 chr5 100227142 100227178 -52310081 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1349 268 250 11 32 chr5 100227188 100227283 -52309976 + (TATATG)n Simple_repeat Simple_repeat 6 98 0 3 1349 333 0 0 0 chr5 100227285 100227322 -52309937 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1349 369 0 0 0 chr5 100227336 100227377 -52309882 + (GA)n Simple_repeat Simple_repeat 1 41 0 3 1349 419 252 87 81 chr5 100227381 100227554 -52309705 - B4 SINE B4 -118 174 1 3 1349 318 307 83 50 chr5 100228542 100228662 -52308597 + ID_B1 SINE B4 96 219 -5 3 1349 250 276 0 17 chr5 100228662 100228721 -52308538 + G-rich Low_complexity Low_complexity 3 60 0 3 1349 3175 94 46 0 chr5 100229080 100229535 -52307724 - Lx2A1 LINE L1 -11 6997 6522 3 1349 343 339 67 46 chr5 100231835 100232119 -52305140 + L1MC LINE L1 5508 5797 -2085 3 1349 1526 157 138 0 chr5 100232249 100232510 -52304749 - MTC LTR MaLR 0 421 125 3 1349 443 273 64 0 chr5 100232516 100232626 -52304633 + RMER1B Other Other 592 708 -358 3 1349 501 151 0 0 chr5 100232659 100232745 -52304514 + (CCA)n Simple_repeat Simple_repeat 1 86 0 3 1349 3620 217 32 36 chr5 100233101 100233886 -52303373 + RMER1C Other Other 398 1179 -163 3 1349 1114 107 11 0 chr5 100233892 100234069 -52303190 + (TCC)n Simple_repeat Simple_repeat 2 180 0 3 1349 606 219 0 0 chr5 100234074 100234220 -52303039 + CT-rich Low_complexity Low_complexity 1 146 0 3 1349 711 143 44 22 chr5 100234235 100234371 -52302888 + RMER1C Other Other 1204 1342 0 3 1349 508 145 36 0 chr5 100234378 100234461 -52302798 - MTC LTR MaLR -331 90 5 3 1349 489 287 26 26 chr5 100234471 100234625 -52302634 - B4A SINE B4 -68 224 71 3 1349 251 219 96 0 chr5 100234681 100234754 -52302505 - MLT1A1 LTR MaLR 0 408 329 3 1349 220 275 29 0 chr5 100234798 100234867 -52302392 + GA-rich Low_complexity Low_complexity 1 71 0 3 1349 327 287 132 13 chr5 100234912 100235064 -52302195 - MLT1A1 LTR MaLR -238 170 1 3 1349 214 147 0 0 chr5 100235068 100235102 -52302157 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1349 244 200 18 35 chr5 100235102 100235159 -52302100 - MER106B DNA MER1_type -1003 56 1 3 1349 314 309 9 28 chr5 100235230 100235351 -52301908 + MLT1A1 LTR MaLR 36 150 -215 3 1349 708 299 34 90 chr5 100235376 100235421 -52301838 + L1M3 LINE L1 3896 3939 -1941 3 1349 1017 149 193 0 chr5 100235421 100235602 -52301657 + B3 SINE B2 1 216 0 3 1349 863 300 34 89 chr5 100235602 100236060 -52301199 + L1M3 LINE L1 3940 4399 -1741 3 1349 530 180 180 0 chr5 100236171 100236299 -52300960 + MER20 DNA MER1_type 17 167 -52 4 1349 234 0 0 0 chr5 100236302 100236328 -52300931 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 1349 381 257 91 151 chr5 100236732 100237025 -52300234 + ORR1E LTR MaLR 72 354 -5 4 1349 4746 141 65 78 chr5 100237037 100237951 -52299308 + RMER19B LTR ERVK 1 902 0 4 1349 1550 38 27 0 chr5 100238103 100238287 -52298972 + B2_Mm1a SINE B2 2 190 -3 4 1349 34 24 0 0 chr5 100238289 100238330 -52298929 + AT_rich Low_complexity Low_complexity 1 41 0 4 1349 704 295 65 0 chr5 100238586 100238847 -52298412 - L1MA8 LINE L1 -17 6274 5997 4 1349 297 372 115 5 chr5 100239189 100239389 -52297870 + LTR82B Low_complexity ERVL 609 830 0 4 1349 243 337 117 6 chr5 100239538 100239717 -52297542 + MLT1A1 LTR MaLR 73 271 -218 3 1349 358 75 321 44 chr5 100240428 100240540 -52296719 - B2_Mm2 SINE B2 -6 189 47 4 1349 299 111 18 36 chr5 100240622 100240672 -52296587 - B2_Mm1a SINE B2 -14 179 129 4 1349 2388 106 110 47 chr5 100240672 100241119 -52296140 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1349 6074 45 4 19 chr5 100241124 100241876 -52295383 - IAPEz-int LTR ERVK -5 6476 5736 4 1349 2255 75 0 0 chr5 100241875 100242153 -52295106 - IAPEz-int LTR ERVK -4845 1636 1359 4 1349 3391 69 25 16 chr5 100242153 100242719 -52294540 - IAPEz-int LTR ERVK -5819 662 168 4 1349 242 327 0 0 chr5 100242719 100242774 -52294485 - RLTR27 LTR ERVK -34 275 221 4 1349 1065 100 25 82 chr5 100242774 100242970 -52294289 - IAPEz-int LTR ERVK -6288 193 9 4 1349 2429 112 87 33 chr5 100242971 100243422 -52293837 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1349 1002 75 8 0 chr5 100243422 100243555 -52293704 - B2_Mm1t SINE B2 -59 134 1 4 1349 885 324 58 12 chr5 100243730 100244055 -52293204 - MTE2b LTR MaLR 0 379 40 4 1349 450 239 0 0 chr5 100244083 100244175 -52293084 - MT2A LTR ERVL -441 92 1 4 1349 630 233 115 60 chr5 100244265 100244448 -52292811 + B3A SINE B2 6 198 0 4 1349 780 208 13 19 chr5 100246027 100246184 -52291075 - URR1A DNA MER1_type -15 211 56 4 1349 914 66 48 12 chr5 100247243 100247411 -52289848 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 4 1349 558 155 37 12 chr5 100247429 100247592 -52289667 + (TAGA)n Simple_repeat Simple_repeat 3 169 0 4 1349 862 102 16 28 chr5 100247607 100247789 -52289470 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 4 1349 439 70 0 27 chr5 100247801 100247875 -52289384 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 4 1349 934 303 140 5 chr5 100248672 100249328 -52287931 - Lx8 LINE L1 -196 7277 6533 4 1349 547 246 8 0 chr5 100249374 100249492 -52287767 - Lx8 LINE L1 -1049 6424 6306 4 1349 225 257 129 0 chr5 100249494 100249564 -52287695 + RCHARR1 DNA MER1_type 896 974 0 4 1349 255 288 147 28 chr5 100249584 100249727 -52287532 + L2a LINE L2 3249 3408 -18 4 1349 678 220 81 21 chr5 100250166 100250352 -52286907 - B3A SINE B2 0 198 2 4 1349 897 142 12 6 chr5 100250831 100251001 -52286258 + GA-rich Low_complexity Low_complexity 2 172 0 4 1349 798 312 36 30 chr5 100251336 100251729 -52285530 - L1_Rod LINE L1 -666 5181 4787 4 1349 705 168 0 0 chr5 100251758 100252166 -52285093 + (TG)n Simple_repeat Simple_repeat 1 408 0 4 1349 270 176 0 0 chr5 100252235 100252286 -52284973 + CT-rich Low_complexity Low_complexity 1 51 0 4 1349 207 0 0 0 chr5 100252869 100252892 -52284367 + (TAGA)n Simple_repeat Simple_repeat 2 24 0 4 1349 696 209 0 24 chr5 100252899 100253150 -52284109 + (CATATA)n Simple_repeat Simple_repeat 1 244 0 4 1349 1464 70 11 0 chr5 100253785 100253972 -52283287 - B2_Mm2 SINE B2 -6 189 1 4 1349 3342 33 2 2 chr5 100254339 100254736 -52282523 + L1Md_F2 LINE L1 6174 6570 -12 4 1349 212 189 0 0 chr5 100255347 100255384 -52281875 + T-rich Low_complexity Low_complexity 1 37 0 4 1349 2153 92 5 149 chr5 100255975 100256357 -52280902 + ORR1A2 LTR MaLR 1 327 0 4 1349 304 273 153 31 chr5 100256379 100256613 -52280646 - L1MC5 LINE L1 -34 7927 7669 4 1349 2362 70 129 11 chr5 100256613 100256962 -52280297 + RLTR10 LTR ERVK 1 390 0 4 1349 304 273 153 31 chr5 100256962 100257014 -52280245 - L1MC5 LINE L1 -293 7668 7606 4 1349 351 272 85 35 chr5 100257207 100257348 -52279911 - HAL1-2a_MD LINE L1 -532 2492 2345 4 1349 884 309 118 3 chr5 100257578 100257900 -52279359 + ORR1E LTR MaLR 1 359 0 4 1349 3768 173 58 0 chr5 100258000 100258659 -52278600 + RMER1B Other Other 359 1055 -11 4 1349 1961 315 152 20 chr5 100258827 100258906 -52278353 + MTEb-int LTR MaLR 172 256 -1324 4 1349 1670 134 56 43 chr5 100258906 100259210 -52278049 + Lx LINE L1 6332 6639 -15 4 1349 342 0 0 0 chr5 100259210 100259248 -52278011 + (TAA)n Simple_repeat Simple_repeat 2 39 0 4 1349 1961 315 152 20 chr5 100259248 100260073 -52277186 + MTEb-int LTR MaLR 257 1196 -384 4 1349 1328 266 55 45 chr5 100261241 100261501 -52275758 + MTEb-int LTR MaLR 1147 1417 -163 4 1349 4753 39 12 2 chr5 100261501 100262074 -52275185 + L1Md_F3 LINE L1 6006 6584 0 4 1349 1328 266 55 45 chr5 100262074 100262103 -52275156 + MTEb-int LTR MaLR 1418 1436 -144 4 1349 4867 49 16 5 chr5 100262103 100262718 -52274541 + L1Md_F2 LINE L1 5960 6581 -1 4 1349 1328 266 55 45 chr5 100262718 100262804 -52274455 + MTEb-int LTR MaLR 1437 1527 -53 4 1349 355 233 87 34 chr5 100262804 100262917 -52274342 + MTEb LTR MaLR 1 128 -242 4 1349 470 280 25 17 chr5 100262919 100263039 -52274220 + MTEb LTR MaLR 259 379 0 4 1349 1426 282 148 16 chr5 100263169 100264386 -52272873 + L1M2 LINE L1 4197 5683 -608 4 1349 451 344 40 47 chr5 100264478 100264731 -52272528 + LTR16A LTR ERVL 1 251 -200 4 1349 591 274 23 123 chr5 100264800 100265100 -52272159 - MT2A LTR ERVL -206 327 58 4 1349 1011 237 5 0 chr5 100265750 100265957 -52271302 - B3 SINE B2 -7 209 2 4 1349 441 0 0 0 chr5 100266205 100266254 -52271005 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 4 1349 1206 72 71 6 chr5 100266259 100266427 -52270832 + B2_Mm2 SINE B2 5 183 -12 4 1349 714 24 0 0 chr5 100266685 100266769 -52270490 + (GAAA)n Simple_repeat Simple_repeat 4 87 0 4 1349 36 53 0 0 chr5 100267040 100267097 -52270162 + AT_rich Low_complexity Low_complexity 1 57 0 4 1349 213 286 129 0 chr5 100267211 100267281 -52269978 + ID4 SINE ID 3 81 -2 4 1349 1340 227 48 43 chr5 100267376 100267791 -52269468 - MTD LTR MaLR -2 417 1 4 1349 466 340 68 96 chr5 100267891 100268275 -52268984 + L1M5 LINE L1 4789 5161 -985 4 1349 212 213 12 62 chr5 100268276 100268356 -52268903 + (CCCCAG)n Simple_repeat Simple_repeat 1 76 0 4 1350 2325 192 37 44 chr5 100270714 100271232 -52266027 - RLTR40 LTR ERVK 0 817 304 4 1350 223 154 0 0 chr5 100271237 100271276 -52265983 + C-rich Low_complexity Low_complexity 3 41 0 4 1350 880 98 9 49 chr5 100271281 100271504 -52265755 + CT-rich Low_complexity Low_complexity 1 214 0 4 1350 1268 200 92 11 chr5 100271510 100271629 -52265630 - RLTR40 LTR ERVK -520 297 162 4 1350 261 0 0 0 chr5 100271629 100271658 -52265601 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1350 387 0 0 0 chr5 100271658 100271700 -52265559 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 1350 362 107 0 0 chr5 100271700 100271756 -52265503 - L1_Mus3 LINE L1 -14 6624 6569 4 1350 1268 200 92 11 chr5 100271756 100271907 -52265352 - RLTR40 LTR ERVK -656 161 5 4 1350 3574 15 2 0 chr5 100272253 100272647 -52264612 + MTA_Mm LTR MaLR 1 395 -1 4 1350 8872 43 1 66 chr5 100272648 100273822 -52263437 + MTA_Mm-int LTR MaLR 1 1098 0 4 1350 2896 29 6 0 chr5 100273822 100274163 -52263096 + MTA_Mm LTR MaLR 1 343 -53 4 1350 1439 115 65 112 chr5 100274154 100274448 -52262811 - RMER15 LTR ERVL -293 282 3 4 1350 194 328 39 87 chr5 100274472 100274599 -52262660 - L2c LINE L2 -1 3386 3266 4 1350 332 241 50 28 chr5 100275112 100275216 -52262043 + MIRb SINE MIR 111 216 -46 4 1350 306 222 0 0 chr5 100275441 100275495 -52261764 - MER58D DNA MER1_type -16 370 317 4 1350 466 165 65 11 chr5 100275597 100275689 -52261570 + B4A SINE B4 155 251 -41 4 1350 216 67 0 0 chr5 100275704 100275734 -52261525 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1350 222 62 0 0 chr5 100275825 100275857 -52261402 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 4 1350 669 164 175 3 chr5 100275947 100276105 -52261154 + MTD LTR MaLR 237 405 -14 4 1350 408 313 82 0 chr5 100276137 100276284 -52260975 - Tigger5 DNA MER2_type -2245 161 3 4 1350 834 271 94 14 chr5 100276706 100276983 -52260276 + Lx8 LINE L1 7157 7455 -18 4 1350 393 251 73 5 chr5 100276963 100277155 -52260104 + Lx9 LINE L1 7436 7640 -4 4 1350 343 234 52 21 chr5 100277525 100277621 -52259638 - PB1D9 SINE Alu -15 105 7 4 1350 473 235 87 22 chr5 100278295 100278478 -52258781 + L1M5 LINE L1 3737 3931 -2215 4 1350 1181 132 16 10 chr5 100278492 100278684 -52258575 + B2_Mm2 SINE B2 1 193 -2 4 1350 221 29 0 54 chr5 100278710 100278723 -52258536 + (CAAAAA)n Simple_repeat Simple_repeat 2 14 0 4 1350 779 111 26 0 chr5 100278723 100278840 -52258419 + PB1D9 SINE Alu 1 120 0 4 1350 221 29 0 54 chr5 100278840 100278863 -52258396 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 4 1350 712 259 51 66 chr5 100279339 100279463 -52257796 + B4A SINE B4 20 148 -144 4 1350 1075 64 43 0 chr5 100279463 100279604 -52257655 + B1_Mm SINE Alu 1 147 0 4 1350 712 259 51 66 chr5 100279604 100279752 -52257507 + B4A SINE B4 149 288 -4 4 1350 237 132 0 0 chr5 100279808 100279846 -52257413 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1350 489 249 89 7 chr5 100279858 100280009 -52257250 + L1ME1 LINE L1 5841 6002 -177 4 1350 2251 252 101 62 chr5 100280212 100280464 -52256795 - Lx8 LINE L1 -403 7070 6812 4 1350 270 0 0 0 chr5 100280464 100280494 -52256765 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 4 1350 2251 252 101 62 chr5 100280494 100281005 -52256254 - Lx8 LINE L1 -662 6811 6277 4 1350 256 298 194 40 chr5 100281144 100281371 -52255888 - MIRb SINE MIR -5 263 2 4 1350 23 86 0 0 chr5 100281985 100282043 -52255216 + AT_rich Low_complexity Low_complexity 1 58 0 4 1350 338 338 7 40 chr5 100282131 100282282 -52254977 - Lx7 LINE L1 -1409 6287 6142 4 1350 256 326 15 81 chr5 100282301 100282561 -52254698 + Lx8 LINE L1 7229 7471 -2 4 1350 284 342 0 0 chr5 100282571 100282642 -52254617 + RSINE1 SINE B4 27 97 -68 4 1350 934 171 97 10 chr5 100282642 100282733 -52254526 - RLTR20D LTR ERVK 0 568 466 4 1350 342 0 0 0 chr5 100282733 100282771 -52254488 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1350 1658 135 78 34 chr5 100282771 100283133 -52254126 - RLTR20D LTR ERVK -103 465 31 4 1350 648 0 0 0 chr5 100283133 100283205 -52254054 + (TC)n Simple_repeat Simple_repeat 1 72 0 4 1350 1129 51 0 7 chr5 100283207 100283346 -52253913 - B1_Mus2 SINE Alu -5 142 5 4 1350 1658 131 76 36 chr5 100283346 100283376 -52253883 - RLTR20D LTR ERVK -538 30 1 4 1350 260 301 0 76 chr5 100283376 100283455 -52253804 + RSINE1 SINE B4 93 165 0 4 1350 1369 288 91 28 chr5 100283458 100284047 -52253212 + Lx8 LINE L1 6607 7196 -277 4 1350 198 103 0 0 chr5 100284118 100284147 -52253112 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 4 1350 211 255 0 19 chr5 100284147 100284161 -52253098 - B4 SINE B4 -156 136 86 4 1350 270 26 0 0 chr5 100284161 100284199 -52253060 - B1_Mur4 SINE Alu -112 38 1 4 1350 311 293 17 0 chr5 100284292 100284408 -52252851 + Lx8 LINE L1 7354 7471 -2 4 1350 229 269 0 0 chr5 100284530 100284582 -52252677 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1350 1070 232 222 41 chr5 100285714 100286224 -52251035 - Lx8 LINE L1 -3 7470 6839 4 1350 230 0 33 0 chr5 100286893 100286923 -52250336 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1350 857 162 0 0 chr5 100286927 100287063 -52250196 - B1_Mur4 SINE Alu -13 137 2 5 1350 313 283 19 19 chr5 100287320 100287428 -52249831 + PB1 SINE Alu 18 125 -2 5 1350 617 38 12 0 chr5 100288509 100288589 -52248670 + (GGGA)n Simple_repeat Simple_repeat 4 84 0 5 1350 229 196 0 0 chr5 100288834 100288880 -52248379 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1350 561 264 73 28 chr5 100289831 100290010 -52247249 - B3A SINE B2 -11 187 1 5 1350 325 257 108 54 chr5 100290138 100290249 -52247010 - PB1 SINE Alu -10 117 1 5 1350 478 230 26 17 chr5 100290261 100290376 -52246883 - PB1D10 SINE Alu -1 116 1 5 1350 426 270 135 61 chr5 100290486 100290663 -52246596 + Lx8 LINE L1 7153 7325 -148 5 1350 180 0 0 0 chr5 100290663 100290683 -52246576 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 5 1350 426 270 135 61 chr5 100290683 100290801 -52246458 + Lx8 LINE L1 7326 7470 -3 5 1350 21 0 0 0 chr5 100291517 100291538 -52245721 + AT_rich Low_complexity Low_complexity 1 21 0 5 1350 1182 68 0 0 chr5 100291723 100291870 -52245389 + B1_Mus1 SINE Alu 2 148 0 5 1350 390 241 0 0 chr5 100291980 100292088 -52245171 + (TG)n Simple_repeat Simple_repeat 1 108 0 5 1350 719 282 70 102 chr5 100292628 100293011 -52244248 + MTEa LTR MaLR 1 371 -8 5 1350 327 284 39 33 chr5 100293404 100293671 -52243588 + RLTR15 LTR ERVK 48 278 -81 5 1350 357 62 0 0 chr5 100293758 100293806 -52243453 + (GGAA)n Simple_repeat Simple_repeat 2 49 0 5 1350 293 252 111 0 chr5 100293925 100294060 -52243199 + L1M2 LINE L1 3073 3222 -2921 5 1350 234 0 0 0 chr5 100294085 100294111 -52243148 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 5 1350 280 256 12 0 chr5 100294121 100294207 -52243052 + L1M2 LINE L1 3313 3399 -2744 5 1350 197 83 0 27 chr5 100294306 100294343 -52242916 + (TTTAA)n Simple_repeat Simple_repeat 4 39 0 5 1350 1292 262 58 31 chr5 100294419 100294899 -52242360 - Lx9 LINE L1 -157 7487 6995 5 1350 303 274 0 0 chr5 100295218 100295291 -52241968 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1350 685 202 134 34 chr5 100295537 100295716 -52241543 - B3A SINE B2 -1 197 1 5 1350 324 280 147 52 chr5 100296198 100296409 -52240850 + Charlie4a DNA MER1_type 44 274 -234 5 1350 404 176 0 64 chr5 100296420 100296529 -52240730 + Charlie4a DNA MER1_type 353 454 -54 5 1350 260 186 83 17 chr5 100298499 100298619 -52238640 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 5 1350 873 179 17 17 chr5 100298622 100298798 -52238461 - B2_Mm2 SINE B2 -18 177 2 5 1350 535 315 65 91 chr5 100299739 100300137 -52237122 + MLT1B LTR MaLR 1 388 -2 5 1350 234 128 0 0 chr5 100300157 100300196 -52237063 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1350 252 256 0 78 chr5 100300202 100300322 -52236937 + (TGGG)n Simple_repeat Simple_repeat 3 110 0 5 1350 328 67 16 16 chr5 100300322 100300383 -52236876 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1350 252 256 0 78 chr5 100300383 100300453 -52236806 + (TGGG)n Simple_repeat Simple_repeat 4 70 0 5 1350 397 50 33 0 chr5 100300486 100300546 -52236713 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1350 437 281 126 92 chr5 100300619 100300881 -52236378 - B4A SINE B4 -21 271 1 5 1350 730 233 33 0 chr5 100301045 100301225 -52236034 - MER53 DNA hAT -3 190 5 5 1350 203 233 48 32 chr5 100301715 100301777 -52235482 + MIR3 SINE MIR 110 172 -36 5 1350 228 252 37 54 chr5 100302221 100302308 -52234951 + L1M4 LINE L1 5505 5588 -2294 5 1350 378 282 45 9 chr5 100303146 100303257 -52234002 + PB1D10 SINE Alu 2 116 -1 5 1350 846 164 54 43 chr5 100303532 100303717 -52233542 - B2_Mm2 SINE B2 -8 187 1 5 1350 387 318 148 0 chr5 100303988 100304177 -52233082 - MLT1L LTR MaLR -31 579 363 5 1350 389 295 58 87 chr5 100304349 100304557 -52232702 + B4A SINE B4 5 206 -86 5 1350 696 185 173 41 chr5 100304873 100305116 -52232143 - B4A SINE B4 -16 276 2 5 1350 696 243 21 0 chr5 100306069 100306213 -52231046 + B1F SINE Alu 1 147 -2 5 1350 387 0 0 0 chr5 100307415 100307458 -52229801 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 5 1350 298 369 21 21 chr5 100308069 100308213 -52229046 - MIR SINE MIR -75 187 44 5 1350 3161 149 65 2 chr5 100308378 100308917 -52228342 - RMER15 LTR ERVL 0 575 3 5 1350 1479 285 182 31 chr5 100308924 100309608 -52227651 - Lx8 LINE L1 -445 7028 6235 5 1350 1284 79 56 0 chr5 100309608 100309786 -52227473 - B2_Mm2 SINE B2 -7 188 1 5 1350 1479 285 182 31 chr5 100309786 100309808 -52227451 - Lx8 LINE L1 -1239 6234 6215 5 1350 262 230 122 0 chr5 100309813 100309887 -52227372 - RMER15-int LTR ERVL -895 4104 4022 5 1350 4240 244 55 21 chr5 100309875 100310959 -52226300 - RMER15-int LTR ERVL -2610 2389 1269 5 1350 2267 138 26 19 chr5 100310959 100311379 -52225880 + RLTR28 LTR ERVL 1 423 -101 5 1350 3070 222 97 12 chr5 100311379 100311892 -52225367 - RMER15-int LTR ERVL -4156 843 306 5 1350 342 0 0 0 chr5 100311892 100311930 -52225329 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1350 513 0 0 0 chr5 100311930 100311986 -52225273 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1350 3070 222 97 12 chr5 100311986 100312226 -52225033 - RMER15-int LTR ERVL -4694 305 26 5 1350 3490 141 14 11 chr5 100312238 100312811 -52224448 - RMER15 LTR ERVL 0 575 1 5 1350 824 336 34 47 chr5 100312936 100313401 -52223858 - MT2A LTR ERVL -74 459 1 5 1350 871 88 36 0 chr5 100314351 100314488 -52222771 - URR1A DNA MER1_type 0 226 85 5 1350 1019 300 92 45 chr5 100314709 100315595 -52221664 + RMER15-int LTR ERVL 1205 2132 -2867 5 1350 313 250 118 12 chr5 100315675 100315760 -52221499 + RMER15-int LTR ERVL 2296 2389 -2610 5 1350 1845 272 70 56 chr5 100315852 100316568 -52220691 + RMER15-int LTR ERVL 4271 4996 -3 5 1350 948 83 0 0 chr5 100316991 100317123 -52220136 + B1_Mus2 SINE Alu 7 138 -9 5 1350 228 35 0 0 chr5 100317123 100317152 -52220107 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1350 429 20 0 0 chr5 100317393 100317443 -52219816 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 5 1350 204 171 54 54 chr5 100317445 100317477 -52219782 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 5 1350 300 53 0 0 chr5 100317477 100317515 -52219744 + (TAGG)n Simple_repeat Simple_repeat 1 38 0 5 1350 204 171 54 54 chr5 100317515 100317575 -52219684 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 5 1350 656 250 0 14 chr5 100317643 100317780 -52219479 + B1_Mur1 SINE Alu 1 137 -12 5 1350 330 26 0 0 chr5 100317780 100317819 -52219440 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 5 1350 786 257 14 29 chr5 100317936 100318144 -52219115 + B4A SINE B4 2 206 -86 5 1350 220 264 138 0 chr5 100318477 100318564 -52218695 + MER5A DNA MER1_type 88 186 -3 5 1350 1182 71 0 0 chr5 100318592 100318873 -52218386 + (TG)n Simple_repeat Simple_repeat 1 281 0 5 1350 180 0 0 0 chr5 100319275 100319295 -52217964 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1350 324 296 58 29 chr5 100319368 100319507 -52217752 + L1M5 LINE L1 5172 5314 -832 5 1350 190 364 126 0 chr5 100319571 100319722 -52217537 + MIR SINE MIR 53 222 -40 5 1350 23 78 0 0 chr5 100319991 100320042 -52217217 + AT_rich Low_complexity Low_complexity 1 51 0 5 1350 1298 93 27 11 chr5 100320105 100320289 -52216970 + B2_Mm2 SINE B2 2 188 -7 5 1350 836 101 0 8 chr5 100320313 100320443 -52216816 + (GGGA)n Simple_repeat Simple_repeat 2 130 0 5 1350 180 241 83 33 chr5 100320581 100320641 -52216618 - MIRm SINE MIR -114 162 100 5 1350 542 201 30 118 chr5 100321642 100321811 -52215448 - ORR1D1 LTR MaLR -212 162 9 5 1350 705 202 12 5 chr5 100321820 100322038 -52215221 - Lx9 LINE L1 -836 6808 6515 5 1350 607 172 34 8 chr5 100322127 100322244 -52215015 + Lx7 LINE L1 7554 7673 -23 5 1350 2443 125 22 6 chr5 100322244 100322605 -52214654 + ORR1B2 LTR MaLR 1 367 0 5 1350 365 253 0 0 chr5 100322606 100322700 -52214559 + L1M2 LINE L1 2637 2755 -3388 5 1350 330 301 122 22 chr5 100322722 100322861 -52214398 + L1M2 LINE L1 3726 3878 -2002 5 1350 245 202 33 87 chr5 100322835 100322927 -52214332 + L1M2 LINE L1 4060 4146 -1734 5 1350 494 264 9 104 chr5 100323077 100323288 -52213971 + L1MA4A LINE L1 5552 5777 -523 5 1350 359 217 123 68 chr5 100323314 100323477 -52213782 - Lx8 LINE L1 0 7473 7302 5 1350 429 252 11 10 chr5 100323478 100323610 -52213649 + L1MA4A LINE L1 5792 5924 -376 5 1350 856 242 14 43 chr5 100323667 100323874 -52213385 + RMER30 DNA MER1_type 2 202 0 5 1350 26 64 0 0 chr5 100324007 100324054 -52213205 + AT_rich Low_complexity Low_complexity 1 47 0 5 1350 379 295 11 70 chr5 100324642 100324828 -52212431 + Charlie2b DNA MER1_type 2608 2782 0 5 1350 1507 41 10 15 chr5 100325559 100325759 -52211500 + L1Md_F3 LINE L1 6372 6570 -14 5 1350 403 227 109 43 chr5 100326044 100326182 -52211077 - MER5A1 DNA MER1_type -7 159 13 5 1350 562 203 98 0 chr5 100326655 100326778 -52210481 + B1_Mus2 SINE Alu 1 135 -12 5 1350 797 171 234 0 chr5 100326796 100326971 -52210288 + B3 SINE B2 1 216 0 5 1350 981 119 0 0 chr5 100327009 100327160 -52210099 + (GGAA)n Simple_repeat Simple_repeat 4 154 0 5 1350 422 304 20 7 chr5 100327200 100327346 -52209913 - B4A SINE B4 -142 150 3 5 1350 398 293 199 0 chr5 100327364 100327620 -52209639 - L1M4 LINE L1 -5211 1331 1025 5 1350 429 173 0 0 chr5 100327621 100327696 -52209563 + B3A SINE B2 3 77 -121 5 1350 450 0 0 0 chr5 100327703 100327753 -52209506 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1350 377 198 86 21 chr5 100328220 100328313 -52208946 - PB1D10 SINE Alu -1 116 18 5 1350 368 326 52 26 chr5 100328328 100328520 -52208739 - L1M4 LINE L1 -6223 319 123 5 1350 916 9 18 0 chr5 100328657 100328770 -52208489 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 5 1350 1600 186 62 9 chr5 100329652 100329993 -52207266 - MTC LTR MaLR 0 421 63 5 1350 927 259 66 15 chr5 100331033 100331292 -52205967 - Lx6 LINE L1 -40 7420 7149 5 1350 871 241 10 0 chr5 100331327 100331530 -52205729 + MTD LTR MaLR 5 209 -210 5 1350 276 280 0 0 chr5 100331530 100331605 -52205654 + RLTR24 LTR ERV1 1 75 -454 5 1350 260 268 205 13 chr5 100331797 100331948 -52205311 + RLTR24 LTR ERV1 350 529 0 5 1350 929 188 44 5 chr5 100331948 100332147 -52205112 + MTD LTR MaLR 205 411 -8 5 1350 609 275 73 16 chr5 100332334 100332526 -52204733 + MTD LTR MaLR 18 220 -199 5 1350 4653 199 59 30 chr5 100332526 100333587 -52203672 + Lx9 LINE L1 6553 7644 0 5 1350 712 322 32 28 chr5 100333611 100333860 -52203399 + Lx7 LINE L1 6374 6623 -1073 5 1350 568 282 77 11 chr5 100333860 100333890 -52203369 - B3A SINE B2 -3 195 167 5 1350 300 53 0 0 chr5 100333890 100333928 -52203331 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1350 610 244 74 0 chr5 100333928 100334080 -52203179 - B3 SINE B2 -32 166 1 5 1350 1014 195 46 0 chr5 100334089 100334284 -52202975 - B3 SINE B2 -11 205 2 6 1350 1124 233 121 4 chr5 100334285 100334565 -52202694 + Lx7 LINE L1 6621 6933 -763 5 1350 416 19 0 19 chr5 100334752 100334806 -52202453 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1350 388 250 74 169 chr5 100334817 100335041 -52202218 - B4A SINE B4 -43 249 49 6 1350 244 292 146 0 chr5 100335753 100335842 -52201417 + PB1D10 SINE Alu 10 111 -6 6 1350 320 188 0 15 chr5 100335854 100335919 -52201340 + ID4 SINE ID 10 73 -10 6 1350 3575 51 9 0 chr5 100336062 100336494 -52200765 - RLTR10C LTR ERVK 0 436 1 6 1350 46399 9 0 0 chr5 100336494 100341522 -52195737 - MMERVK10C-int LTR ERVK 0 7581 2552 6 1350 362 111 0 0 chr5 100341528 100341591 -52195668 - MMERVK10C-int LTR ERVK -5634 1947 1885 6 1350 313 175 0 0 chr5 100341596 100341653 -52195606 - MMERVK10C-int LTR ERVK -4261 1145 1089 6 1350 692 242 154 70 chr5 100341640 100342028 -52195231 - MMERVK10C-int LTR ERVK -4819 2425 2075 6 1350 933 148 4 177 chr5 100342116 100342387 -52194872 - MMERVK10C-int LTR ERVK -6629 952 729 6 1350 2897 47 0 0 chr5 100342385 100342728 -52194531 - MMERVK10C-int LTR ERVK -7238 343 1 6 1350 3671 46 5 0 chr5 100342728 100343162 -52194097 - RLTR10C LTR ERVK 0 436 1 6 1350 1157 48 7 0 chr5 100343369 100343516 -52193743 + B1_Mus1 SINE Alu 1 148 0 6 1350 682 60 20 0 chr5 100345369 100345469 -52191790 + (TC)n Simple_repeat Simple_repeat 1 102 0 6 1350 252 0 0 0 chr5 100345469 100345496 -52191763 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1350 546 239 17 91 chr5 100346176 100346351 -52190908 + RSINE1 SINE B4 3 164 -1 6 1350 256 135 368 30 chr5 100346455 100346561 -52190698 - B2_Mm2 SINE B2 -7 188 47 6 1350 1082 129 47 0 chr5 100346627 100346798 -52190461 - B2_Mm1t SINE B2 -14 179 1 6 1350 367 261 6 95 chr5 100346853 100347022 -52190237 + B4A SINE B4 5 158 -134 6 1350 692 126 0 8 chr5 100347073 100347193 -52190066 + (TG)n Simple_repeat Simple_repeat 1 119 0 6 1350 461 312 68 54 chr5 100347210 100347488 -52189771 - B4A SINE B4 -10 282 1 6 1350 2677 73 6 3 chr5 100348668 100349025 -52188234 + L1_Mus2 LINE L1 6208 6565 -1 6 1350 580 176 91 18 chr5 100349178 100349288 -52187971 - PB1D7 SINE Alu -2 118 1 6 1350 195 129 0 0 chr5 100349331 100349362 -52187897 + (TTC)n Simple_repeat Simple_repeat 2 32 0 6 1350 219 293 24 12 chr5 100350617 100350700 -52186559 + ID_B1 SINE B4 81 164 -60 6 1350 3084 52 49 0 chr5 100350807 100351194 -52186065 - MTB_Mm LTR MaLR -1 406 1 6 1350 438 258 10 0 chr5 100351670 100351767 -52185492 + PB1D7 SINE Alu 22 119 -1 6 1350 372 295 108 0 chr5 100351782 100351911 -52185348 + B1F SINE Alu 3 145 -4 6 1350 21 0 0 0 chr5 100352465 100352486 -52184773 + AT_rich Low_complexity Low_complexity 1 21 0 6 1350 1088 204 19 0 chr5 100352797 100353008 -52184251 - B3 SINE B2 -1 215 1 6 1350 1394 95 26 0 chr5 100354268 100354457 -52182802 + B2_Mm2 SINE B2 1 194 -1 6 1350 373 303 38 0 chr5 100354585 100354717 -52182542 + L1MB3 LINE L1 5870 6006 -177 6 1350 248 23 45 0 chr5 100354760 100354804 -52182455 + BGLII_B LTR ERVK 4 49 -392 6 1350 1682 147 127 0 chr5 100354804 100355150 -52182109 + MYSERV16_I-int LTR ERVK 1937 2326 0 6 1350 2814 96 52 14 chr5 100355152 100355575 -52181684 + BGLII_B LTR ERVK 3 441 0 6 1350 263 211 42 14 chr5 100355575 100355647 -52181612 + L1MB3 LINE L1 6084 6157 -26 6 1350 367 273 35 43 chr5 100356434 100356549 -52180710 - PB1D7 SINE Alu -6 114 1 6 1350 376 228 76 117 chr5 100356674 100356897 -52180362 + Lx8 LINE L1 7167 7380 -93 6 1350 600 269 25 35 chr5 100357093 100357293 -52179966 - B3A SINE B2 0 198 1 6 1350 300 216 67 11 chr5 100357308 100357397 -52179862 - U6 snRNA snRNA -7 100 7 6 1350 1042 70 0 0 chr5 100357444 100357586 -52179673 + B1_Mus2 SINE Alu 6 147 0 6 1350 264 179 0 18 chr5 100357605 100357662 -52179597 + PB1D9 SINE Alu 1 56 -64 6 1350 25 51 0 0 chr5 100358178 100358217 -52179042 + AT_rich Low_complexity Low_complexity 1 39 0 6 1350 713 248 148 50 chr5 100358512 100358869 -52178390 + L1MC1 LINE L1 4093 4484 -1662 6 1350 1429 78 5 15 chr5 100358911 100359107 -52178152 + B2_Mm2 SINE B2 1 194 -1 6 1350 236 269 0 0 chr5 100359128 100359180 -52178079 + B3A SINE B2 97 148 -50 6 1350 186 103 0 0 chr5 100359341 100359370 -52177889 + (GGA)n Simple_repeat Simple_repeat 3 31 0 6 1350 708 249 79 30 chr5 100359635 100359838 -52177421 + B3 SINE B2 4 216 0 6 1350 22 0 0 0 chr5 100359838 100359860 -52177399 + AT_rich Low_complexity Low_complexity 1 22 0 6 1350 538 260 169 17 chr5 100359868 100360169 -52177090 + L1MC1 LINE L1 5260 5606 -738 6 1350 707 236 34 0 chr5 100360173 100360351 -52176908 + B3A SINE B2 2 185 -13 6 1350 329 226 62 76 chr5 100360388 100360532 -52176727 + RSINE1 SINE B4 5 146 -19 6 1350 510 283 87 14 chr5 100360578 100360786 -52176473 + L1MC1 LINE L1 5632 5854 -479 6 1350 2767 210 44 17 chr5 100361594 100362482 -52174777 - Lx7 LINE L1 -1498 6198 5309 6 1350 270 0 0 0 chr5 100362553 100362583 -52174676 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1350 1048 265 106 12 chr5 100363007 100363336 -52173923 + MTE2a LTR MaLR 19 378 -1 6 1350 457 267 113 27 chr5 100363810 100363960 -52173299 + RSINE1 SINE B4 1 163 -2 6 1350 1367 85 6 0 chr5 100363980 100364157 -52173102 + B2_Mm1a SINE B2 2 179 -14 6 1350 1248 48 0 0 chr5 100364189 100364336 -52172923 + B1_Mus2 SINE Alu 1 147 0 6 1350 508 301 120 32 chr5 100364355 100365054 -52172205 + L1_Rod LINE L1 2131 2977 -3166 6 1350 3554 15 2 2 chr5 100365111 100365507 -52171752 + MTA_Mm LTR MaLR 1 396 0 6 1350 9865 16 0 0 chr5 100365507 100366605 -52170654 + MTA_Mm-int LTR MaLR 1 1098 0 6 1350 3598 20 0 0 chr5 100366605 100367001 -52170258 + MTA_Mm LTR MaLR 1 396 0 6 1350 236 30 0 29 chr5 100367008 100367042 -52170217 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1350 1007 96 22 0 chr5 100367042 100367178 -52170081 - B1_Mus1 SINE Alu -7 141 3 6 1350 26 0 0 0 chr5 100367184 100367210 -52170049 + AT_rich Low_complexity Low_complexity 1 26 0 6 1350 291 231 3 0 chr5 100367266 100367342 -52169917 + L1_Rod LINE L1 2928 3026 -2821 6 1350 374 346 31 8 chr5 100367345 100367473 -52169786 + RSINE1 SINE B4 7 137 -28 6 1350 786 22 0 0 chr5 100367824 100367916 -52169343 + (GGAA)n Simple_repeat Simple_repeat 4 95 0 6 1350 785 227 31 94 chr5 100368823 100369047 -52168212 + B3 SINE B2 2 211 -5 6 1350 25 51 0 0 chr5 100369049 100369088 -52168171 + AT_rich Low_complexity Low_complexity 1 39 0 6 1350 345 47 0 0 chr5 100369353 100369396 -52167863 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1350 1741 21 0 0 chr5 100369970 100370163 -52167096 + B2_Mm1a SINE B2 1 193 0 6 1350 356 275 84 32 chr5 100370563 100370717 -52166542 + RSINE1 SINE B4 4 165 0 6 1350 21 57 0 0 chr5 100371532 100371567 -52165692 + AT_rich Low_complexity Low_complexity 1 35 0 6 1350 464 132 12 0 chr5 100371684 100371767 -52165492 + (TA)n Simple_repeat Simple_repeat 1 84 0 6 1350 3443 32 7 7 chr5 100372134 100372547 -52164712 - L1Md_F3 LINE L1 0 6584 6172 6 1350 214 234 173 27 chr5 100373393 100373503 -52163756 - B3A SINE B2 -72 126 1 6 1350 696 260 114 67 chr5 100373527 100373931 -52163328 - L1MB5 LINE L1 -18 6156 5734 6 1350 215 135 0 0 chr5 100374343 100374380 -52162879 - B1_Mur2 SINE Alu -37 112 76 6 1350 225 289 55 11 chr5 100375276 100375367 -52161892 - PB1D10 SINE Alu -8 109 15 6 1350 593 185 17 0 chr5 100375510 100375629 -52161630 + B3 SINE B2 2 122 -94 6 1350 540 230 36 29 chr5 100375688 100375827 -52161432 - B1_Mur1 SINE Alu -9 140 1 6 1350 455 314 135 77 chr5 100375917 100376105 -52161154 - B4A SINE B4 -18 274 71 6 1350 1407 83 5 50 chr5 100376105 100376307 -52160952 + B2_Mm1a SINE B2 1 193 0 6 1350 455 314 135 77 chr5 100376307 100376377 -52160882 - B4A SINE B4 -222 70 1 6 1350 305 305 53 23 chr5 100377187 100377358 -52159901 + HAL1 LINE L1 1419 1594 -913 6 1350 772 193 0 0 chr5 100377560 100377695 -52159564 + B1_Mur1 SINE Alu 2 136 -13 6 1350 243 0 0 0 chr5 100377697 100377724 -52159535 + (CAA)n Simple_repeat Simple_repeat 3 29 0 6 1350 273 308 44 0 chr5 100377779 100377870 -52159389 + RSINE1 SINE B4 3 97 -68 6 1350 539 210 40 8 chr5 100378195 100378320 -52158939 + B3 SINE B2 80 208 -8 6 1350 1105 185 19 0 chr5 100378372 100378577 -52158682 + B3 SINE B2 2 210 -6 6 1350 298 316 51 34 chr5 100378786 100378904 -52158355 - ORR1E LTR MaLR -239 120 1 6 1350 1773 106 55 46 chr5 100379127 100379453 -52157806 + ORR1A4 LTR MaLR 1 329 0 6 1350 385 200 0 0 chr5 100379500 100379575 -52157684 + B3A SINE B2 1 75 -123 6 1350 391 253 22 51 chr5 100380406 100380553 -52156706 + B1F SINE Alu 15 143 -7 6 1350 517 294 20 14 chr5 100381014 100381162 -52156097 - RSINE1 SINE B4 -6 159 11 6 1350 241 302 33 44 chr5 100381356 100381369 -52155890 + MT2B LTR ERVL 152 163 -438 6 1350 387 231 173 0 chr5 100381369 100381473 -52155786 + B1_Mus2 SINE Alu 3 124 -23 6 1350 270 56 0 0 chr5 100382494 100382530 -52154729 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 6 1350 229 235 20 0 chr5 100383687 100383738 -52153521 - PB1D9 SINE Alu -8 112 61 6 1350 1141 122 148 0 chr5 100383740 100383936 -52153323 + URR1A DNA MER1_type 1 225 -1 6 1350 259 310 95 33 chr5 100384416 100384558 -52152701 + B1F2 SINE Alu 1 147 -2 6 1350 23 0 0 0 chr5 100385572 100385595 -52151664 + AT_rich Low_complexity Low_complexity 1 23 0 6 1350 223 112 170 9 chr5 100386518 100386569 -52150690 + B1_Mur3 SINE Alu 81 136 -11 6 1350 504 0 0 0 chr5 100387227 100387283 -52149976 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1350 387 0 0 0 chr5 100387283 100387325 -52149934 + (CA)n Simple_repeat Simple_repeat 1 43 0 6 1350 23 33 0 0 chr5 100390871 100390901 -52146358 + AT_rich Low_complexity Low_complexity 1 30 0 6 1350 216 135 0 0 chr5 100392503 100392540 -52144719 + (TA)n Simple_repeat Simple_repeat 1 37 0 6 1350 750 172 37 0 chr5 100393364 100393498 -52143761 + B1_Mur3 SINE Alu 9 147 -2 6 1350 217 260 110 0 chr5 100394687 100394760 -52142499 + PB1 SINE Alu 4 84 -43 6 1350 1142 56 0 27 chr5 100395380 100395528 -52141731 + B1_Mm SINE Alu 2 145 -2 6 1350 29 0 0 0 chr5 100395530 100395559 -52141700 + AT_rich Low_complexity Low_complexity 1 29 0 6 1350 408 291 74 7 chr5 100396007 100396142 -52141117 + ID_B1 SINE B4 81 224 0 7 1350 204 40 0 0 chr5 100396203 100396228 -52141031 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 1350 277 271 29 0 chr5 100398508 100398578 -52138681 - PB1D7 SINE Alu -14 106 35 7 1350 309 238 92 19 chr5 100399517 100399631 -52137628 - PB1D7 SINE Alu -5 115 1 7 1350 631 115 0 0 chr5 100399669 100399765 -52137494 - B1_Mur4 SINE Alu -6 144 49 7 1350 332 245 147 0 chr5 100400115 100400217 -52137042 + PB1D10 SINE Alu 1 117 0 7 168 463 175 40 40 chr5 100401125 100401226 -52136033 + B1_Mur1 SINE Alu 48 148 -1 7 1351 216 211 39 0 chr5 100403439 100403491 -52133768 + RSINE1 SINE B4 50 103 -62 7 1351 513 0 0 0 chr5 100403504 100403561 -52133698 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1351 218 309 61 12 chr5 100403757 100403839 -52133420 + ID_B1 SINE B4 80 165 -59 7 1351 23 33 0 0 chr5 100404742 100404772 -52132487 + AT_rich Low_complexity Low_complexity 1 30 0 7 1351 285 158 0 58 chr5 100407493 100407614 -52129645 + (CCG)n Simple_repeat Simple_repeat 2 115 0 7 1351 207 191 0 21 chr5 100407646 100407694 -52129565 + (CCG)n Simple_repeat Simple_repeat 3 49 0 7 1351 21 36 0 0 chr5 100408036 100408064 -52129195 + GC_rich Low_complexity Low_complexity 1 28 0 7 1351 279 0 0 0 chr5 100408860 100408891 -52128368 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 7 1351 21 0 0 0 chr5 100409089 100409110 -52128149 + AT_rich Low_complexity Low_complexity 1 21 0 7 1351 1184 192 150 18 chr5 100409454 100409793 -52127466 + ORR1C2 LTR MaLR 1 384 0 7 1351 663 172 43 29 chr5 100409896 100410034 -52127225 - B1F SINE Alu 0 149 10 7 1351 262 0 26 26 chr5 100410406 100410445 -52126814 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1351 1194 15 0 0 chr5 100410445 100410581 -52126678 - B1_Mus2 SINE Alu -11 136 1 7 1351 225 224 0 0 chr5 100410931 100410980 -52126279 + ID4_ SINE ID 34 82 -1 7 1351 1008 224 5 32 chr5 100411279 100411496 -52125763 + B3 SINE B2 4 214 -2 7 1351 1540 159 47 7 chr5 100411507 100411672 -52125587 + Lx9 LINE L1 7336 7500 -144 7 1351 879 53 0 0 chr5 100411672 100411785 -52125474 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 7 1351 1540 159 47 7 chr5 100411785 100411916 -52125343 + Lx9 LINE L1 7501 7643 -1 7 1351 1050 44 73 0 chr5 100411944 100412081 -52125178 - B1_Mus1 SINE Alu -1 147 1 7 1351 943 43 0 92 chr5 100412320 100412473 -52124786 + B1_Mus1 SINE Alu 10 148 0 7 1351 220 312 215 5 chr5 100412511 100412730 -52124529 + L2 LINE L2 2375 2639 -780 7 1351 358 238 12 0 chr5 100412773 100412857 -52124402 + PB1D7 SINE Alu 27 111 -9 7 1351 216 0 0 0 chr5 100412858 100412882 -52124377 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 7 1351 254 235 136 0 chr5 100412965 100413046 -52124213 - L2a LINE L2 -52 3374 3283 7 1351 883 249 35 0 chr5 100413092 100413289 -52123970 + B3 SINE B2 1 204 -12 7 1351 2541 86 3 0 chr5 100413365 100413689 -52123570 + ORR1A2 LTR MaLR 1 325 -2 7 1351 744 166 51 0 chr5 100413708 100413865 -52123394 - URR1B DNA MER1_type 0 225 61 7 1351 829 29 0 0 chr5 100414335 100414440 -52122819 + B1_Mm SINE Alu 36 140 -7 7 1351 540 0 0 0 chr5 100414444 100414504 -52122755 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 1351 658 250 21 14 chr5 100414508 100414650 -52122609 + B1_Mur1 SINE Alu 1 143 -6 7 1351 468 191 0 0 chr5 100414650 100414744 -52122515 + GA-rich Low_complexity Low_complexity 1 94 0 7 1351 570 214 126 68 chr5 100414758 100414964 -52122295 + ID_B1 SINE B4 2 219 -5 7 1351 28 0 0 0 chr5 100414964 100414992 -52122267 + AT_rich Low_complexity Low_complexity 1 28 0 7 1351 368 316 30 65 chr5 100415138 100415338 -52121921 + Lx8 LINE L1 7107 7299 -174 7 1351 1034 102 6 0 chr5 100415366 100415542 -52121717 + (CA)n Simple_repeat Simple_repeat 2 178 0 7 1351 3751 39 5 0 chr5 100415544 100415978 -52121281 - RLTR10C LTR ERVK 0 436 1 7 1351 8229 33 0 0 chr5 100415978 100416907 -52120352 - MMERVK10C-int LTR ERVK -2 7579 6651 7 1351 42615 41 1 1 chr5 100416898 100421839 -52115420 - MMERVK10C-int LTR ERVK -1771 5810 870 7 1351 2743 87 53 3 chr5 100421837 100422217 -52115042 - MMERVK10C-int LTR ERVK -7182 399 1 7 1351 3341 39 9 0 chr5 100422217 100422649 -52114610 - RLTR10C LTR ERVK 0 436 1 7 1351 203 140 0 20 chr5 100422649 100422700 -52114559 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1351 436 264 45 23 chr5 100423025 100423157 -52114102 - ORR1C1 LTR MaLR 0 370 236 7 1351 345 322 0 0 chr5 100423781 100423902 -52113357 - RLTR6-int LTR ERV1 -315 7463 7343 7 1351 239 143 0 23 chr5 100424295 100424338 -52112921 - ORR1C1-int LTR MaLR -16 1493 1452 7 1351 1138 88 0 0 chr5 100424338 100424485 -52112774 + B1_Mus1 SINE Alu 2 148 0 7 1351 798 123 0 49 chr5 100424506 100424669 -52112590 - ORR1C1-int LTR MaLR -44 1465 1311 7 1351 2820 236 118 24 chr5 100424659 100425568 -52111691 - ORR1C1-int LTR MaLR -374 996 3 7 1351 1354 183 125 75 chr5 100425570 100425930 -52111329 - ORR1C1 LTR MaLR 0 378 1 7 1351 2226 155 40 2 chr5 100426967 100427122 -52110137 - RMER15 LTR ERVL -133 442 286 7 1351 234 0 0 0 chr5 100427122 100427148 -52110111 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 7 1351 2226 155 40 2 chr5 100427148 100427418 -52109841 - RMER15 LTR ERVL -290 285 2 7 1351 423 0 0 0 chr5 100427650 100427697 -52109562 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1351 1210 27 7 7 chr5 100428194 100428341 -52108918 + B1_Mm SINE Alu 1 147 0 7 1351 886 69 0 23 chr5 100428348 100428481 -52108778 + (GAAAA)n Simple_repeat Simple_repeat 2 131 0 7 1351 360 0 0 0 chr5 100428785 100428825 -52108434 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1351 1621 208 58 86 chr5 100429354 100430302 -52106957 + RMER1B Other Other 1 531 -499 7 1351 2413 102 9 0 chr5 100431100 100431424 -52105835 + ORR1A2 LTR MaLR 1 327 0 7 1351 1184 187 48 31 chr5 100431616 100432012 -52105247 + RMER6B LTR ERVK 1 450 -11 7 1351 456 19 0 0 chr5 100432308 100432361 -52104898 + (CATA)n Simple_repeat Simple_repeat 2 54 0 7 1351 1986 165 21 34 chr5 100432364 100432752 -52104507 + Lx7 LINE L1 6765 7147 -549 7 1351 1465 192 40 37 chr5 100432752 100433104 -52104155 - ORR1C1 LTR MaLR -25 353 1 7 1351 1895 191 74 57 chr5 100433104 100433577 -52103682 + Lx7 LINE L1 7193 7673 -23 7 1351 1128 127 80 13 chr5 100433577 100433853 -52103406 + ORR1B2 LTR MaLR 1 359 -8 7 1351 773 182 39 45 chr5 100434170 100434207 -52103052 - ORR1C2 LTR MaLR 0 384 354 7 1351 2497 89 6 0 chr5 100434207 100434532 -52102727 - ORR1A2 LTR MaLR 0 327 1 7 1351 773 177 50 37 chr5 100434532 100434736 -52102523 - ORR1C2 LTR MaLR -31 353 4 7 1351 219 220 0 0 chr5 100437089 100437139 -52100120 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1351 658 251 48 19 chr5 100437342 100437549 -52099710 - ORR1D2 LTR MaLR -157 213 1 7 1351 219 36 0 0 chr5 100437576 100437604 -52099655 + (GTTTG)n Simple_repeat Simple_repeat 5 32 0 7 1351 469 200 0 0 chr5 100437673 100437753 -52099506 + RMER12B LTR ERVK 1 80 -1324 7 1351 487 174 20 0 chr5 100437755 100437853 -52099406 - RLTR16 LTR ERVK -2 503 404 7 1351 769 131 23 0 chr5 100437857 100437987 -52099272 - RLTR16 LTR ERVK -372 133 1 7 1351 6271 158 23 83 chr5 100437987 100439146 -52098113 + RMER12B LTR ERVK 75 1253 -151 7 1351 279 114 0 0 chr5 100439146 100439190 -52098069 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1351 6271 158 23 83 chr5 100439190 100439236 -52098023 + RMER12B LTR ERVK 1254 1263 -141 7 1351 243 103 0 0 chr5 100439236 100439275 -52097984 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1351 6271 158 23 83 chr5 100439275 100439484 -52097775 + RMER12B LTR ERVK 1264 1404 0 7 1351 292 282 0 112 chr5 100439484 100439584 -52097675 - ID_B1 SINE B4 -50 174 88 7 1351 380 241 103 8 chr5 100439809 100439926 -52097333 - B1_Mur1 SINE Alu -20 129 2 7 1351 235 170 0 78 chr5 100440049 100440100 -52097159 - RMER10A LTR ERVL -395 47 1 7 1351 604 155 0 86 chr5 100440195 100440325 -52096934 - B1_Mur4 SINE Alu -22 127 9 7 1351 1145 168 33 14 chr5 100440364 100440575 -52096684 + B3 SINE B2 2 216 0 7 1351 373 320 85 24 chr5 100440688 100440899 -52096360 + ERVL-E-int LTR ERVL 384 607 -5060 7 1351 273 276 66 0 chr5 100441264 100441340 -52095919 + MLT1D LTR MaLR 415 495 -10 7 1351 317 284 28 47 chr5 100441400 100441507 -52095752 + ERVL-E-int LTR ERVL 770 874 -4840 7 1351 3108 20 0 0 chr5 100442209 100442555 -52094704 - ORR1A0 LTR MaLR 0 346 1 7 1351 1206 92 68 11 chr5 100442746 100442922 -52094337 + B2_Mm2 SINE B2 1 186 -9 7 1351 365 233 0 11 chr5 100442953 100443044 -52094215 - B1_Mur1 SINE Alu -18 131 42 7 1351 198 103 0 0 chr5 100443450 100443479 -52093780 + (TC)n Simple_repeat Simple_repeat 1 29 0 7 1351 727 233 118 11 chr5 100443590 100443768 -52093491 + B3 SINE B2 1 197 -19 7 1351 507 33 0 0 chr5 100443785 100443846 -52093413 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1351 1539 100 11 282 chr5 100443846 100443914 -52093345 - ORR1A4 LTR MaLR -3 326 281 7 1351 1372 60 5 37 chr5 100443914 100444104 -52093155 - L1_Mus1 LINE L1 0 6567 6384 7 1351 1539 100 11 282 chr5 100444104 100444482 -52092777 - ORR1A4 LTR MaLR -49 280 1 7 1351 308 170 28 9 chr5 100444495 100444602 -52092657 + (TA)n Simple_repeat Simple_repeat 2 110 0 7 1351 198 0 0 0 chr5 100444604 100444626 -52092633 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1351 391 270 0 80 chr5 100446095 100446220 -52091039 + PB1D10 SINE Alu 3 117 0 7 1351 298 301 0 0 chr5 100446589 100446662 -52090597 + ID4 SINE ID 2 74 -9 7 1351 661 168 6 22 chr5 100446695 100446878 -52090381 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1351 577 203 0 11 chr5 100446924 100447103 -52090156 + (CA)n Simple_repeat Simple_repeat 2 178 0 7 1351 594 190 0 22 chr5 100447116 100447299 -52089960 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1351 304 222 13 40 chr5 100447347 100447422 -52089837 + HAL1-3A_ME LINE L1 1973 2045 -813 7 1351 340 237 13 38 chr5 100447448 100447527 -52089732 - ID4 SINE ID -3 80 4 7 1351 1419 90 11 0 chr5 100447592 100447781 -52089478 + B2_Mm1t SINE B2 2 192 -1 7 1351 357 109 0 0 chr5 100447787 100447842 -52089417 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1351 21 0 0 0 chr5 100447987 100448008 -52089251 + AT_rich Low_complexity Low_complexity 1 21 0 7 1351 631 182 0 12 chr5 100448175 100448347 -52088912 + (CA)n Simple_repeat Simple_repeat 1 170 0 7 1351 749 204 154 11 chr5 100448469 100448657 -52088602 - B3 SINE B2 0 216 2 7 1351 338 221 5 70 chr5 100448944 100449129 -52088130 + GA-rich Low_complexity Low_complexity 5 177 0 7 1351 283 253 12 58 chr5 100449191 100449363 -52087896 + GA-rich Low_complexity Low_complexity 6 169 0 7 1351 598 227 103 49 chr5 100449364 100449568 -52087691 + B3 SINE B2 2 216 0 7 1351 1418 201 208 53 chr5 100449665 100449922 -52087337 - RMER6C LTR ERVK 0 720 367 7 1351 240 35 0 0 chr5 100449922 100449951 -52087308 + (AACTG)n Simple_repeat Simple_repeat 4 32 0 7 1351 1418 168 214 48 chr5 100449951 100450247 -52087012 - RMER6C LTR ERVK -323 367 2 7 1351 705 290 126 23 chr5 100450272 100450533 -52086726 + B4 SINE B4 1 288 -4 7 1351 327 49 0 0 chr5 100450566 100450607 -52086652 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1351 412 282 45 78 chr5 100450610 100450764 -52086495 - ORR1E LTR MaLR -210 149 1 8 1351 1043 124 198 5 chr5 100450837 100451024 -52086235 + URR1A DNA MER1_type 4 226 0 8 1351 710 163 8 8 chr5 100451062 100451186 -52086073 - B1_Mur1 SINE Alu -7 142 19 8 1351 352 250 0 94 chr5 100451098 100451204 -52086055 - MT2B LTR ERVL -341 260 165 8 1351 565 303 84 70 chr5 100451203 100451476 -52085783 - RMER15 LTR ERVL -49 526 250 8 1351 1595 21 21 21 chr5 100451744 100451936 -52085323 - B2_Mm1a SINE B2 0 193 2 8 1351 705 63 0 0 chr5 100452041 100452136 -52085123 + (GGGAGA)n Simple_repeat Simple_repeat 3 97 0 8 1351 312 27 0 0 chr5 100452155 100452192 -52085067 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1351 189 0 0 0 chr5 100452644 100452665 -52084594 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1351 2500 66 3 0 chr5 100452697 100453015 -52084244 - ORR1A2 LTR MaLR -8 319 1 8 1351 473 205 98 0 chr5 100453036 100453148 -52084111 - B3A SINE B2 -75 123 1 8 1351 618 254 103 0 chr5 100453299 100453464 -52083795 + ID_B1 SINE B4 2 183 -41 8 1351 974 138 6 0 chr5 100453782 100453956 -52083303 + (GA)n Simple_repeat Simple_repeat 2 176 0 8 1351 2292 98 31 9 chr5 100454080 100454398 -52082861 + MTB LTR MaLR 3 327 0 8 1351 6346 137 81 33 chr5 100454399 100455597 -52081662 + MTB-int LTR MaLR 2 1256 -2 8 1351 3304 55 2 2 chr5 100455599 100455999 -52081260 + MTB LTR MaLR 1 400 0 8 1351 245 346 83 41 chr5 100456103 100456272 -52080987 - MLT1N2 LTR MaLR -278 284 109 8 1351 808 253 51 10 chr5 100456561 100456832 -52080427 + MTEb LTR MaLR 1 329 -50 8 1351 207 0 0 0 chr5 100456832 100456855 -52080404 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 8 1351 664 189 61 0 chr5 100456873 100457005 -52080254 + B1_Mur2 SINE Alu 10 149 0 8 1351 697 241 60 6 chr5 100457011 100457178 -52080081 - B3A SINE B2 -16 182 7 8 1351 814 288 94 13 chr5 100457218 100457517 -52079742 + MTE-int LTR MaLR 1 323 -1257 8 1351 237 135 0 0 chr5 100457560 100457612 -52079647 + (T)n Simple_repeat Simple_repeat 1 52 0 8 1351 411 98 0 0 chr5 100457825 100457886 -52079373 + (TA)n Simple_repeat Simple_repeat 1 61 0 8 1351 323 261 83 50 chr5 100458024 100458145 -52079114 - B1F SINE Alu -18 131 7 8 1351 575 252 34 27 chr5 100458061 100458208 -52079051 - ID_B1 SINE B4 -55 169 22 8 1351 382 308 0 0 chr5 100458445 100458536 -52078723 + B4A SINE B4 1 91 -201 8 1351 953 144 14 0 chr5 100458754 100458900 -52078359 + B1_Mur4 SINE Alu 2 149 -1 8 1351 415 273 11 80 chr5 100458969 100458984 -52078275 - B3A SINE B2 0 198 186 8 1351 689 236 0 0 chr5 100458984 100459128 -52078131 - B1_Mur1 SINE Alu -5 144 1 8 1351 415 273 11 80 chr5 100459128 100459299 -52077960 - B3A SINE B2 -13 185 25 8 1351 1079 199 14 14 chr5 100459311 100459525 -52077734 - B3 SINE B2 -1 215 2 8 1351 23 0 0 71 chr5 100459617 100459659 -52077600 + AT_rich Low_complexity Low_complexity 1 39 0 8 1351 1173 82 0 0 chr5 100459954 100460101 -52077158 + B1_Mus2 SINE Alu 1 147 0 8 1351 262 256 136 37 chr5 100460537 100460618 -52076641 + PB1D10 SINE Alu 22 110 -7 8 1351 895 203 35 30 chr5 100460621 100460819 -52076440 + B3 SINE B2 1 199 -17 8 1351 338 278 0 32 chr5 100461282 100461375 -52075884 - B3A SINE B2 -108 90 1 8 1351 210 118 0 0 chr5 100468435 100468469 -52068790 + (CCCG)n Simple_repeat Simple_repeat 1 34 0 8 1351 258 176 0 121 chr5 100470146 100470204 -52067055 - PB1D7 SINE Alu -3 117 67 8 1351 492 48 0 0 chr5 100470231 100470294 -52066965 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 8 1351 966 39 94 0 chr5 100470695 100470823 -52066436 - B1_Mus2 SINE Alu 0 147 8 8 1351 1037 203 34 10 chr5 100471029 100471233 -52066026 + B3 SINE B2 5 213 -3 8 1351 280 267 36 98 chr5 100471246 100471260 -52065999 + MT2B LTR ERVL 153 159 -442 8 1351 734 167 61 0 chr5 100471260 100471392 -52065867 + B1_Mur2 SINE Alu 3 142 -7 8 1351 341 250 35 23 chr5 100472060 100472073 -52065186 + B1F SINE Alu 60 140 -9 8 1351 412 179 0 0 chr5 100472073 100472140 -52065119 + ID_B1 SINE B4 149 215 -9 8 1351 225 0 0 0 chr5 100472140 100472165 -52065094 + (CA)n Simple_repeat Simple_repeat 2 26 0 8 1351 969 121 55 55 chr5 100472222 100472405 -52064854 + B2_Mm2 SINE B2 2 184 -11 8 1351 310 273 215 35 chr5 100472447 100472591 -52064668 - B3A SINE B2 -6 192 23 8 1351 719 145 20 33 chr5 100472961 100473111 -52064148 - B1_Mur2 SINE Alu 0 149 2 8 1351 382 282 36 18 chr5 100474462 100474574 -52062685 + PB1D10 SINE Alu 2 115 -2 8 1351 422 204 235 0 chr5 100474758 100474890 -52062369 - RSINE1 SINE B4 0 165 3 8 1351 467 280 106 106 chr5 100475104 100475340 -52061919 + B4A SINE B4 4 239 -53 8 1351 331 267 99 0 chr5 100476113 100476214 -52061045 + PB1D10 SINE Alu 1 111 -6 8 1351 240 270 324 0 chr5 100477592 100477666 -52059593 + PB1D10 SINE Alu 6 103 -14 8 1351 545 269 20 41 chr5 100477697 100477844 -52059415 - ID_B1 SINE B4 -1 223 80 8 1351 270 254 0 0 chr5 100477886 100477941 -52059318 + RSINE1 SINE B4 3 57 -108 8 1351 1162 113 57 0 chr5 100479055 100479232 -52058027 - B2_Mm2 SINE B2 -7 188 2 8 1351 284 231 0 30 chr5 100479272 100479339 -52057920 - PB1D9 SINE Alu 0 120 56 8 1351 242 242 43 43 chr5 100479277 100479346 -52057913 - ID_B1 SINE B4 -3 221 153 8 1351 378 263 183 9 chr5 100479363 100479478 -52057781 - RSINE1 SINE B4 0 165 31 8 1351 492 271 81 24 chr5 100479539 100479752 -52057507 - B3A SINE B2 -2 214 1 8 1351 3557 24 48 96 chr5 100480277 100480776 -52056483 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1351 611 230 45 126 chr5 100480838 100480913 -52056346 - ORR1C2 LTR MaLR 0 384 319 8 1351 1666 16 21 0 chr5 100480913 100481100 -52056159 - B2_Mm1a SINE B2 -2 191 1 8 1351 611 230 45 126 chr5 100481100 100481223 -52056036 - ORR1C2 LTR MaLR -66 318 202 8 1351 830 217 96 21 chr5 100481225 100481413 -52055846 + B3 SINE B2 1 202 -14 8 1351 351 142 160 35 chr5 100481439 100481535 -52055724 - ORR1C2 LTR MaLR -220 164 48 8 1351 235 216 90 51 chr5 100481694 100481772 -52055487 - ID_B1 SINE B4 -81 143 63 8 1351 5082 42 19 0 chr5 100482517 100483111 -52054148 - RLTR1D LTR ERV1 0 605 1 8 1351 231 184 41 0 chr5 100483571 100483620 -52053639 - PB1D9 SINE Alu -15 105 55 8 1351 859 196 208 18 chr5 100484604 100484874 -52052385 - MTB_Mm LTR MaLR 0 421 3 8 1351 414 252 3 2 chr5 100484874 100484966 -52052293 + MTE2b LTR MaLR 286 412 -7 8 1351 413 259 63 56 chr5 100484968 100485111 -52052148 - Lx8 LINE L1 -215 7258 7115 8 1351 278 192 102 0 chr5 100485123 100485189 -52052070 + MTE2b LTR MaLR 280 362 -17 8 1351 458 176 166 30 chr5 100485252 100485374 -52051885 - B3 SINE B2 -67 149 2 8 1351 2986 38 43 13 chr5 100485397 100485772 -52051487 - L1Md_F2 LINE L1 0 6582 6197 8 1351 240 219 120 162 chr5 100485777 100485919 -52051340 - Charlie1b DNA MER1_type -308 215 80 8 1351 436 236 27 18 chr5 100486152 100486264 -52050995 + PB1D10 SINE Alu 5 117 0 8 1351 259 312 111 30 chr5 100486315 100486414 -52050845 + PB1D10 SINE Alu 1 107 -10 8 1351 310 246 73 81 chr5 100486933 100487057 -52050202 + B3A SINE B2 75 197 -1 8 1351 535 216 83 35 chr5 100487131 100487275 -52049984 - B3 SINE B2 -38 178 28 8 1351 227 256 159 23 chr5 100487393 100487481 -52049778 - B1F SINE Alu -1 148 49 8 1351 378 217 161 63 chr5 100487606 100487775 -52049484 + B3A SINE B2 2 191 -4 8 1351 247 321 37 0 chr5 100487856 100487937 -52049322 - Cheshire DNA MER1_type -2162 258 175 8 1351 562 242 37 22 chr5 100489000 100489135 -52048124 - B3A SINE B2 -14 184 48 8 1351 737 212 7 33 chr5 100489137 100489288 -52047971 - B1_Mus2 SINE Alu 0 147 1 8 1351 180 0 0 0 chr5 100489626 100489646 -52047613 + (GA)n Simple_repeat Simple_repeat 1 20 0 8 1351 633 259 14 22 chr5 100489654 100489792 -52047467 - RSINE1 SINE B4 -21 144 8 8 1351 399 273 27 0 chr5 100490281 100490391 -52046868 + PB1D9 SINE Alu 2 114 -6 8 1351 878 218 18 6 chr5 100490733 100490899 -52046360 - B3 SINE B2 -46 170 3 8 1351 617 252 107 15 chr5 100491320 100491525 -52045734 - MTC LTR MaLR -14 407 184 8 1351 327 49 0 0 chr5 100491532 100491573 -52045686 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1351 201 39 0 0 chr5 100491573 100491598 -52045661 + (TC)n Simple_repeat Simple_repeat 2 27 0 8 1351 277 278 61 10 chr5 100491628 100491726 -52045533 + B1F1 SINE Alu 12 114 -35 8 1351 221 350 89 41 chr5 100491726 100491765 -52045494 + B4A SINE B4 110 237 -55 8 1351 231 184 66 0 chr5 100491872 100491989 -52045270 + (TA)n Simple_repeat Simple_repeat 1 124 0 8 1351 295 167 0 18 chr5 100493281 100493336 -52043923 + B4 SINE B4 2 55 -237 8 1351 359 263 13 0 chr5 100493350 100493426 -52043833 + B4A SINE B4 145 221 -71 8 1351 1544 67 0 0 chr5 100493685 100493878 -52043381 - B2_Mm2 SINE B2 -2 193 1 8 1351 792 211 126 0 chr5 100493967 100494157 -52043102 - B3 SINE B2 -1 215 2 8 1351 328 280 39 20 chr5 100494693 100494795 -52042464 + B4 SINE B4 189 292 0 8 1351 295 238 162 38 chr5 100495209 100495314 -52041945 - PB1D9 SINE Alu -2 118 1 8 1351 417 371 96 20 chr5 100495658 100495856 -52041403 - MER58A DNA MER1_type 0 224 12 8 1351 312 70 0 0 chr5 100498049 100498092 -52039167 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1351 207 125 0 0 chr5 100498092 100498131 -52039128 + (CAGA)n Simple_repeat Simple_repeat 3 42 0 8 1351 308 255 47 47 chr5 100498154 100498261 -52038998 - RSINE1 SINE B4 -49 116 10 9 1351 1038 104 14 0 chr5 100498272 100498416 -52038843 - B1_Mur4 SINE Alu 0 150 5 9 1351 408 207 65 118 chr5 100498775 100498928 -52038331 + B1_Mus2 SINE Alu 1 145 -2 9 1351 522 188 262 0 chr5 100498970 100499119 -52038140 + B3 SINE B2 1 188 -28 9 1351 22 0 0 0 chr5 100499702 100499724 -52037535 + AT_rich Low_complexity Low_complexity 1 22 0 9 1351 391 110 51 64 chr5 100499850 100499928 -52037331 + B1_Mur1 SINE Alu 73 149 0 9 1351 306 333 87 31 chr5 100500233 100500428 -52036831 - L2 LINE L2 -472 2947 2742 1 1351 315 0 0 0 chr5 100500463 100500498 -52036761 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1351 641 252 60 0 chr5 100500502 100500653 -52036606 - B3A SINE B2 -34 164 5 3 1351 244 311 21 49 chr5 100501590 100501732 -52035527 - L1M4 LINE L1 -5950 592 455 4 1351 347 301 19 46 chr5 100501914 100502022 -52035237 + PB1D10 SINE Alu 7 111 -6 5 1351 1770 133 46 33 chr5 100502703 100503006 -52034253 - ORR1A2 LTR MaLR -8 319 13 6 1351 862 197 27 43 chr5 100502994 100503180 -52034079 - B3 SINE B2 -30 186 4 7 1351 445 284 60 8 chr5 100503231 100503348 -52033911 - RSINE1 SINE B4 -8 157 35 8 1351 311 329 68 26 chr5 100503547 100503781 -52033478 - L2 LINE L2 -509 2910 2667 9 1351 250 121 0 0 chr5 100503805 100503838 -52033421 - ID_B1 SINE B4 -17 207 175 1 1351 394 231 0 39 chr5 100503846 100503999 -52033260 + CT-rich Low_complexity Low_complexity 3 149 0 1 1351 433 241 121 0 chr5 100504005 100504121 -52033138 - B1_Mur2 SINE Alu -19 130 1 1 1351 383 212 23 12 chr5 100504418 100504504 -52032755 - PB1D10 SINE Alu -6 111 25 1 1351 398 277 42 0 chr5 100504753 100504872 -52032387 - Lx7 LINE L1 -1720 5976 5853 1 1351 831 237 151 11 chr5 100504888 100505153 -52032106 + Lx7 LINE L1 6655 6956 -740 1 1351 1028 52 76 94 chr5 100505153 100505324 -52031935 + B2_Mm2 SINE B2 2 169 -26 1 1351 213 39 0 0 chr5 100505329 100505355 -52031904 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 1 1351 774 262 93 62 chr5 100505356 100505677 -52031582 + Lx7 LINE L1 6945 7275 -421 1 1351 3309 46 8 0 chr5 100505729 100506120 -52031139 + MTB LTR MaLR 3 396 -4 1 1351 1611 37 21 0 chr5 100506120 100506309 -52030950 + B2_Mm1a SINE B2 1 193 0 1 1351 278 293 83 76 chr5 100506482 100506626 -52030633 + MER21B LTR ERV1 19 163 -700 2 1351 232 253 27 100 chr5 100506675 100506785 -52030474 + MER21B LTR ERV1 366 467 -396 2 1351 222 37 0 0 chr5 100506953 100506980 -52030279 + (CTG)n Simple_repeat Simple_repeat 3 29 0 2 1351 180 0 0 0 chr5 100507228 100507248 -52030011 + (CCCTG)n Simple_repeat Simple_repeat 1 20 0 2 1351 201 152 0 0 chr5 100508741 100508774 -52028485 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1351 625 264 26 9 chr5 100509393 100509547 -52027712 - B3 SINE B2 -42 151 1 2 1351 595 227 3 88 chr5 100509551 100509723 -52027536 + B3 SINE B2 57 216 0 2 1351 2081 153 106 8 chr5 100510147 100510523 -52026736 + MTC LTR MaLR 9 421 0 2 1351 311 273 13 0 chr5 100510749 100510826 -52026433 + MIR SINE MIR 182 259 -3 2 1351 1398 251 25 60 chr5 100511028 100511381 -52025878 + ORR1E LTR MaLR 2 403 -4 2 1351 267 31 0 0 chr5 100512024 100512056 -52025203 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1351 583 280 6 17 chr5 100512066 100512224 -52025035 - ID_B1 SINE B4 -63 229 80 3 1351 836 238 15 15 chr5 100512244 100512449 -52024810 - B3 SINE B2 -11 205 1 3 1351 201 74 0 0 chr5 100514609 100514636 -52022623 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 3 1351 421 152 0 0 chr5 100515374 100515440 -52021819 - B1F SINE Alu -5 144 79 3 1351 240 208 55 36 chr5 100515440 100515495 -52021764 - B1F SINE Alu -28 121 66 3 1351 254 190 0 159 chr5 100515466 100515535 -52021724 - B1_Mur2 SINE Alu -26 123 66 3 1351 301 239 113 0 chr5 100515508 100515579 -52021680 - B1F SINE Alu -28 121 43 3 1351 925 42 0 25 chr5 100515572 100515583 -52021676 - B1_Mm SINE Alu -1 146 138 3 1351 183 42 0 0 chr5 100515583 100515607 -52021652 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1351 925 42 0 25 chr5 100515607 100515717 -52021542 - B1_Mm SINE Alu -10 137 28 3 1351 350 254 20 98 chr5 100515632 100515785 -52021474 - MT2B LTR ERVL -337 264 124 3 1351 1607 153 27 27 chr5 100515820 100516149 -52021110 - Lx9 LINE L1 0 7644 7316 4 1351 396 264 68 27 chr5 100516573 100516721 -52020538 + RNLTR23 LTR ERVK 489 642 0 4 1351 218 193 18 0 chr5 100517109 100517166 -52020093 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 4 1351 801 100 41 12 chr5 100517180 100517352 -52019907 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 4 1351 332 252 50 71 chr5 100517352 100517493 -52019766 - Lx5 LINE L1 -16 7034 6897 4 1351 25 0 0 0 chr5 100518446 100518471 -52018788 + GC_rich Low_complexity Low_complexity 1 25 0 4 1351 630 58 19 19 chr5 100518897 100519002 -52018257 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 4 1351 742 219 116 16 chr5 100519056 100519246 -52018013 - B3 SINE B2 -7 209 1 4 1351 628 237 82 0 chr5 100519296 100519431 -52017828 + RSINE1 SINE B4 2 147 -18 4 1351 195 42 0 0 chr5 100519548 100519572 -52017687 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4 1351 463 154 60 12 chr5 100521037 100521148 -52016111 - B1F SINE Alu -2 147 16 4 1351 1140 75 0 20 chr5 100522283 100522433 -52014826 - B1_Mus1 SINE Alu 0 148 2 5 1351 583 266 0 0 chr5 100522467 100522591 -52014668 + ID_B1 SINE B4 97 220 -4 5 1351 581 252 36 0 chr5 100522641 100522780 -52014479 - B1F1 SINE Alu -2 147 4 5 1351 826 254 25 35 chr5 100522858 100523058 -52014201 + B3A SINE B2 1 198 0 5 1351 1425 169 189 13 chr5 100523250 100523568 -52013691 + ORR1D1 LTR MaLR 1 374 0 5 1351 510 165 132 0 chr5 100523951 100524042 -52013217 + PB1D10 SINE Alu 2 104 -13 5 1351 21 57 0 0 chr5 100524119 100524154 -52013105 + AT_rich Low_complexity Low_complexity 1 35 0 5 1351 1371 69 17 0 chr5 100524410 100524584 -52012675 - B2_Mm2 SINE B2 -17 178 2 5 1351 1122 262 42 117 chr5 100525265 100525675 -52011584 - MTE2a LTR MaLR 0 379 1 5 1351 3093 160 18 0 chr5 100525710 100525780 -52011479 - RMER20A LTR ERVK -1 515 446 5 1351 471 18 0 0 chr5 100525780 100525836 -52011423 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1351 3093 160 18 0 chr5 100525836 100526271 -52010988 - RMER20A LTR ERVK -71 445 2 5 1351 991 148 0 0 chr5 100526433 100526582 -52010677 + B1_Mur4 SINE Alu 2 150 0 6 1351 251 227 29 57 chr5 100527018 100527088 -52010171 + L3 LINE CR1 4162 4229 -260 6 1351 198 0 0 0 chr5 100528254 100528276 -52008983 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1351 1136 59 0 0 chr5 100528339 100528475 -52008784 + B1_Mus1 SINE Alu 1 136 -12 6 1351 540 244 52 29 chr5 100528855 100529028 -52008231 - RLTR42-int LTR ERVK -4147 1375 1199 6 1351 246 369 32 90 chr5 100529434 100529589 -52007670 - MER45B DNA Tip100 -666 374 229 6 1351 672 198 0 0 chr5 100529703 100530254 -52007005 + (CA)n Simple_repeat Simple_repeat 1 551 0 6 1351 356 222 28 0 chr5 100530501 100530573 -52006686 + MTE2b LTR MaLR 69 142 -237 6 1351 235 288 59 59 chr5 100530574 100530659 -52006600 + MT2B LTR ERVL 173 257 -344 6 1351 602 221 26 0 chr5 100530583 100530696 -52006563 + B1_Mur2 SINE Alu 29 144 -5 7 1351 1397 85 0 26 chr5 100530839 100531032 -52006227 + B2_Mm2 SINE B2 1 188 -7 7 1351 23 54 0 0 chr5 100531141 100531178 -52006081 + AT_rich Low_complexity Low_complexity 1 37 0 7 1351 524 253 55 66 chr5 100531421 100531603 -52005656 - B3A SINE B2 -16 182 3 7 1351 469 288 53 8 chr5 100531629 100531762 -52005497 - MER44D DNA MER2_type -552 153 15 7 1351 316 136 33 22 chr5 100531955 100532045 -52005214 + GA-rich Low_complexity Low_complexity 3 93 0 7 1351 216 268 18 18 chr5 100532119 100532176 -52005083 + B4A SINE B4 12 68 -224 7 1352 604 269 99 60 chr5 100532636 100532818 -52004441 - B4A SINE B4 -102 190 2 7 1352 239 0 0 31 chr5 100532839 100532871 -52004388 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 7 1352 362 175 125 0 chr5 100532872 100532952 -52004307 - PB1D7 SINE Alu -10 110 21 7 1352 411 283 14 28 chr5 100533249 100533391 -52003868 - L1MD2 LINE L1 -22 6337 6198 8 1352 232 241 17 0 chr5 100533479 100533537 -52003722 - L1MD2 LINE L1 -788 5386 5328 8 1352 457 291 113 22 chr5 100533652 100533963 -52003296 - L1MD2 LINE L1 -870 5270 4936 8 1352 333 309 16 0 chr5 100534024 100534150 -52003109 + (TATG)n Simple_repeat Simple_repeat 4 131 0 8 1352 210 255 0 0 chr5 100534231 100534282 -52002977 + (TATG)n Simple_repeat Simple_repeat 4 54 0 8 1352 720 289 60 30 chr5 100534333 100534601 -52002658 - B4A SINE B4 -8 284 9 8 1352 388 291 67 40 chr5 100534582 100534757 -52002502 - ID_B1 SINE B4 -46 246 69 8 1352 265 297 51 51 chr5 100534757 100534913 -52002346 - L1MD LINE L1 -973 5173 5018 8 1352 450 273 3 0 chr5 100535156 100535485 -52001774 + (TG)n Simple_repeat Simple_repeat 1 330 0 8 1352 332 254 8 0 chr5 100535500 100535618 -52001641 + (TG)n Simple_repeat Simple_repeat 2 120 0 8 1352 303 272 127 0 chr5 100536073 100536167 -52001092 - B1F SINE Alu -38 109 1 8 1352 578 307 12 24 chr5 100536384 100536551 -52000708 + RSINE1 SINE B4 1 165 0 8 1352 1761 179 122 19 chr5 100536647 100537017 -52000242 + MTC LTR MaLR 6 413 -8 8 1352 942 229 6 16 chr5 100537086 100537268 -51999991 + B3 SINE B2 1 180 -36 9 1352 243 0 0 0 chr5 100537268 100537295 -51999964 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1352 356 329 0 0 chr5 100537297 100537382 -51999877 - RMER12 LTR ERVK -471 851 767 9 1352 240 288 0 48 chr5 100537403 100537465 -51999794 + B3 SINE B2 153 211 -5 9 1352 346 112 422 20 chr5 100537511 100537613 -51999646 - B2_Mm2 SINE B2 -6 189 47 9 1352 1215 119 23 0 chr5 100537661 100537838 -51999421 - B2_Mm2 SINE B2 -14 181 1 9 1352 453 274 84 54 chr5 100538888 100539054 -51998205 + MIR SINE MIR 38 208 -54 9 1352 348 394 36 32 chr5 100540342 100540594 -51996665 + MLT1L LTR MaLR 220 472 -138 9 1352 203 311 0 0 chr5 100540952 100541055 -51996204 + (TGGA)n Simple_repeat Simple_repeat 4 106 0 9 1352 997 247 112 24 chr5 100541166 100541460 -51995799 + ORR1E LTR MaLR 38 357 -2 9 1352 390 299 32 7 chr5 100541470 100541625 -51995634 + L1M3 LINE L1 5654 5812 -368 9 1352 244 234 188 0 chr5 100541634 100541698 -51995561 + PB1D10 SINE Alu 4 79 -38 1 1352 451 202 28 23 chr5 100541989 100542166 -51995093 + (TATG)n Simple_repeat Simple_repeat 2 179 0 1 1352 266 269 48 9 chr5 100542178 100542283 -51994976 + (TATATG)n Simple_repeat Simple_repeat 2 110 0 1 1352 246 81 0 0 chr5 100542289 100542326 -51994933 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1352 245 309 150 38 chr5 100542486 100542656 -51994603 + MLT1J LTR MaLR 2 179 -333 1 1352 881 250 37 0 chr5 100543087 100543303 -51993956 - ID_B1 SINE B4 0 224 1 1 1352 364 248 53 17 chr5 100544055 100544188 -51993071 + MIR SINE MIR 100 238 -30 1 1352 396 0 0 0 chr5 100544188 100544232 -51993027 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1352 246 299 77 58 chr5 100544232 100544254 -51993005 + MIRc SINE MIR 239 262 -6 1 1352 396 70 2 2 chr5 100544600 100544660 -51992599 - Lx2 LINE L1 -565 6432 6356 1 1352 4086 92 2 42 chr5 100544660 100545261 -51991998 + Lx LINE L1 6078 6654 0 1 1352 408 243 18 18 chr5 100545361 100545395 -51991864 - ID_B1 SINE B4 -108 116 8 1 1352 464 133 13 0 chr5 100545395 100545470 -51991789 - ID4 SINE ID 0 83 8 1 1352 1401 235 62 57 chr5 100545569 100545971 -51991288 + MTD LTR MaLR 1 404 -15 1 1352 794 329 130 3 chr5 100545974 100546328 -51990931 + MLT2B2 LTR ERVL 116 514 -1 1 1352 497 198 18 26 chr5 100546704 100546933 -51990326 + C-rich Low_complexity Low_complexity 1 227 0 1 1352 443 278 57 38 chr5 100547167 100547324 -51989935 + RSINE1 SINE B4 2 161 -4 1 1352 323 293 12 12 chr5 100547704 100547787 -51989472 + PB1D9 SINE Alu 30 112 -8 1 1352 397 263 35 9 chr5 100547803 100547918 -51989341 + L1MA8 LINE L1 5126 5243 -900 1 1352 854 266 142 22 chr5 100548026 100548434 -51988825 + L1MA8 LINE L1 5383 5839 -452 1 1352 1673 224 59 49 chr5 100548475 100548969 -51988290 + RLTR11A2 LTR ERVK 1 499 -28 1 1352 381 224 38 108 chr5 100548971 100549113 -51988146 + L1MA8 LINE L1 5872 6007 -284 1 1352 252 255 137 0 chr5 100549211 100549313 -51987946 + L1MA8 LINE L1 6134 6249 -51 1 1352 183 208 74 19 chr5 100550194 100550248 -51987011 + L2 LINE L2 2778 2834 -585 1 1352 278 214 56 0 chr5 100550624 100550713 -51986546 - Lx5 LINE L1 0 7050 6957 1 1352 1235 181 0 0 chr5 100550978 100551193 -51986066 + B3 SINE B2 2 216 0 1 1352 234 0 0 0 chr5 100551201 100551227 -51986032 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1352 395 121 0 0 chr5 100551275 100551333 -51985926 + 4.5SRNA scRNA scRNA 33 90 -4 1 1352 1096 90 14 0 chr5 100551333 100551478 -51985781 + B1_Mus1 SINE Alu 2 148 0 1 1352 288 0 0 0 chr5 100551485 100551517 -51985742 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1352 4401 69 30 2 chr5 100551576 100552143 -51985116 - MT2B2 LTR ERVL -1 583 1 1 1352 945 254 130 27 chr5 100552475 100552767 -51984492 - MTEb LTR MaLR -18 361 40 1 1352 501 265 72 22 chr5 100552815 100552864 -51984395 - MER31A LTR ERV1 -338 147 92 1 1352 279 0 0 0 chr5 100552864 100552895 -51984364 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1 1352 1154 51 0 0 chr5 100552895 100553032 -51984227 - B1_Mus1 SINE Alu -10 138 2 1 1352 501 265 72 22 chr5 100553032 100553120 -51984139 - MER31A LTR ERV1 -394 91 3 1 1352 2028 95 60 0 chr5 100555203 100555518 -51981741 - ORR1B1 LTR MaLR -60 334 1 1 1352 1150 325 33 111 chr5 100556216 100556935 -51980324 + MLT2F LTR ERVL 1 663 0 1 1352 292 342 79 0 chr5 100557556 100557670 -51979589 - MER5A DNA MER1_type -63 126 4 1 1352 870 193 0 0 chr5 100558593 100558879 -51978380 + (CA)n Simple_repeat Simple_repeat 1 286 0 1 1352 551 161 8 0 chr5 100558891 100559009 -51978250 + (CA)n Simple_repeat Simple_repeat 1 119 0 1 1352 240 111 0 0 chr5 100559009 100559045 -51978214 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1 1352 639 239 7 34 chr5 100559074 100559221 -51978038 + ID_B1 SINE B4 82 224 0 1 1352 37724 27 2 7 chr5 100559226 100564432 -51972827 + L1Md_T LINE L1 416 5586 -297 1 1352 8681 31 0 0 chr5 100564432 100565428 -51971831 + L1Md_T LINE L1 5587 6582 0 1 1352 489 139 14 0 chr5 100565851 100565923 -51971336 + MT2B LTR ERVL 185 257 -344 1 1352 467 172 120 0 chr5 100565923 100565947 -51971312 + B1_Mus2 SINE Alu 21 128 -21 1 1352 924 152 228 0 chr5 100566034 100566218 -51971041 + URR1A DNA MER1_type 1 226 0 1 1352 1076 79 59 7 chr5 100566279 100566431 -51970828 + B2_Mm2 SINE B2 2 161 -34 1 1352 405 0 0 0 chr5 100566431 100566476 -51970783 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 1 1352 353 215 74 116 chr5 100567010 100567131 -51970128 + LTR37A LTR ERV1 111 226 -200 1 1352 894 169 157 0 chr5 100567192 100567370 -51969889 - URR1A DNA MER1_type -15 211 6 1 1352 285 283 29 39 chr5 100567418 100567521 -51969738 + LTR37A LTR ERV1 325 426 0 1 1352 456 19 0 0 chr5 100568317 100568370 -51968889 + (CCTA)n Simple_repeat Simple_repeat 3 55 0 1 1352 310 239 29 15 chr5 100568374 100568442 -51968817 - ID4_ SINE ID -11 72 4 1 1352 588 291 37 70 chr5 100568586 100568847 -51968412 + B4A SINE B4 4 264 -28 1 1352 189 94 0 0 chr5 100568847 100568879 -51968380 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 1 1352 588 291 37 70 chr5 100568879 100568916 -51968343 + B4A SINE B4 265 292 0 1 1352 197 226 0 31 chr5 100568916 100568980 -51968279 + (CATA)n Simple_repeat Simple_repeat 1 62 0 1 1352 429 281 100 43 chr5 100569009 100569240 -51968019 - RLTR21 LTR ERVK -266 1306 1063 1 1352 459 309 105 23 chr5 100570154 100570326 -51966933 + B3A SINE B2 7 192 -6 1 1352 297 0 0 0 chr5 100571070 100571103 -51966156 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1352 1129 102 0 0 chr5 100571103 100571241 -51966018 - B1_Mus1 SINE Alu -9 139 2 1 1352 285 247 0 115 chr5 100571437 100571451 -51965808 + MT2B LTR ERVL 156 158 -443 1 1352 562 246 6 96 chr5 100571451 100571608 -51965651 + B1_Mur1 SINE Alu 4 146 -3 1 1352 472 341 50 6 chr5 100572979 100573159 -51964100 - MER20 DNA MER1_type 0 219 32 1 1352 490 0 30 15 chr5 100573169 100573235 -51964024 + (CAAAA)n Simple_repeat Simple_repeat 1 67 0 1 1352 1065 270 86 26 chr5 100573290 100573629 -51963630 + MTE2b LTR MaLR 16 374 -5 1 1352 931 196 48 10 chr5 100573739 100573945 -51963314 - B3 SINE B2 0 216 3 1 1352 634 272 173 44 chr5 100574280 100574671 -51962588 + MLT1C LTR MaLR 21 467 0 1 1352 404 264 113 0 chr5 100574776 100574882 -51962377 + RSINE1 SINE B4 2 119 -46 1 1352 466 260 19 0 chr5 100575181 100575285 -51961974 + PB1 SINE Alu 17 122 -5 1 1352 3208 60 8 2 chr5 100575413 100575811 -51961448 + MTB LTR MaLR 1 400 0 1 1352 301 294 34 79 chr5 100575974 100576151 -51961108 + L1M2 LINE L1 3114 3282 -2861 1 1352 2887 24 3 0 chr5 100576280 100576620 -51960639 + ORR1A0 LTR MaLR 6 346 0 1 1352 470 211 57 0 chr5 100576621 100576744 -51960515 - L1MA8 LINE L1 -67 6224 6095 1 1352 233 333 79 18 chr5 100576781 100576946 -51960313 + MIRb SINE MIR 85 259 -9 1 1352 297 0 0 0 chr5 100577578 100577611 -51959648 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1352 198 0 0 0 chr5 100577611 100577632 -51959627 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1352 183 42 0 0 chr5 100577632 100577655 -51959604 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1352 563 255 6 25 chr5 100577699 100577860 -51959399 + L1MB2 LINE L1 6012 6169 -2 1 1352 433 226 85 0 chr5 100577871 100577977 -51959282 + RSINE1 SINE B4 4 118 -47 1 1352 1699 240 78 18 chr5 100578127 100578295 -51958964 - Lx6 LINE L1 -26 7434 7267 1 1352 1238 63 103 0 chr5 100578295 100578469 -51958790 + B2_Mm1t SINE B2 2 193 0 1 1352 1699 240 78 18 chr5 100578469 100578738 -51958521 - Lx6 LINE L1 -194 7266 6972 1 1352 290 265 157 0 chr5 100579075 100579158 -51958101 - MER5B DNA MER1_type -81 97 2 1 1352 1353 73 23 0 chr5 100579830 100580007 -51957252 + B2_Mm2 SINE B2 1 181 -14 1 1352 192 40 0 0 chr5 100580019 100580044 -51957215 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1 1352 583 338 45 10 chr5 100580110 100580310 -51956949 + B4A SINE B4 86 292 0 1 1352 193 177 31 31 chr5 100580310 100580374 -51956885 + (CATG)n Simple_repeat Simple_repeat 3 66 0 1 1352 1004 200 66 10 chr5 100581094 100581291 -51955968 - B3 SINE B2 -7 209 2 1 1352 4923 84 19 46 chr5 100581585 100582373 -51954886 + RMER17A LTR ERVK 1 751 0 1 1352 370 141 21 11 chr5 100582420 100582513 -51954746 + Lx6 LINE L1 7341 7434 -26 1 1352 288 172 0 0 chr5 100582514 100582572 -51954687 + (CATATA)n Simple_repeat Simple_repeat 4 61 0 1 1352 279 240 25 74 chr5 100583245 100583326 -51953933 - ID4_ SINE ID 0 83 7 1 1352 734 242 93 16 chr5 100585416 100585609 -51951650 - MER3 DNA MER1_type -1 208 1 1 1352 657 0 0 0 chr5 100585621 100585694 -51951565 + (TA)n Simple_repeat Simple_repeat 1 73 0 1 1352 658 280 112 26 chr5 100585736 100586004 -51951255 + B4A SINE B4 2 292 0 1 1352 920 132 7 22 chr5 100586806 100586945 -51950314 + B1_Mur2 SINE Alu 2 138 -11 1 1352 211 200 12 48 chr5 100586975 100587059 -51950200 + GA-rich Low_complexity Low_complexity 5 85 0 1 1352 239 232 14 14 chr5 100588245 100588315 -51948944 + (CGG)n Simple_repeat Simple_repeat 2 71 0 1 1352 222 37 0 0 chr5 100588857 100588884 -51948375 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1352 615 238 44 73 chr5 100589905 100590109 -51947150 - B3A SINE B2 0 198 1 1 1352 308 179 149 0 chr5 100590160 100590227 -51947032 - ID4_ SINE ID -2 81 5 1 1352 297 94 58 12 chr5 100590343 100590429 -51946830 + (TG)n Simple_repeat Simple_repeat 2 91 0 1 1352 462 164 92 46 chr5 100590442 100590551 -51946708 - ID_B1 SINE B4 -9 215 102 1 1352 931 297 80 36 chr5 100590581 100590944 -51946315 + MTE2b LTR MaLR 1 379 0 1 1352 467 225 59 44 chr5 100591020 100591155 -51946104 - RMER15 LTR ERVL -103 472 336 1 1352 304 287 100 18 chr5 100591285 100591395 -51945864 + LTR28 LTR ERV1 89 207 -813 1 1352 248 209 108 147 chr5 100591744 100591873 -51945386 + LTR77 LTR ERV1 459 582 -40 1 1352 188 35 35 0 chr5 100592190 100592219 -51945040 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 2 1352 690 235 116 11 chr5 100592219 100592400 -51944859 - B3 SINE B2 -16 200 1 2 1352 409 286 8 51 chr5 100592944 100593062 -51944197 + PB1D10 SINE Alu 5 117 0 2 1352 390 284 21 63 chr5 100593797 100593940 -51943319 + B1F1 SINE Alu 2 138 -11 2 1352 192 158 0 0 chr5 100593969 100594007 -51943252 + A-rich Low_complexity Low_complexity 4 41 0 2 1352 1073 108 0 6 chr5 100594010 100594178 -51943081 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 2 1352 439 271 9 9 chr5 100596932 100597040 -51940219 + PB1D10 SINE Alu 1 108 -9 2 1352 549 44 0 0 chr5 100597062 100597130 -51940129 + (GA)n Simple_repeat Simple_repeat 2 69 0 2 1352 335 211 178 0 chr5 100597248 100597338 -51939921 - B3A SINE B2 -91 107 2 2 1352 433 179 38 0 chr5 100597471 100597577 -51939682 + (TATATG)n Simple_repeat Simple_repeat 2 111 0 2 1352 23 33 0 0 chr5 100597589 100597619 -51939640 + AT_rich Low_complexity Low_complexity 1 30 0 2 1352 530 243 126 6 chr5 100597938 100598120 -51939139 - L1MB7 LINE L1 -223 5961 5758 2 1352 212 378 0 0 chr5 100598124 100598198 -51939061 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1352 1730 201 57 16 chr5 100598301 100598687 -51938572 + MTD LTR MaLR 3 380 -39 2 1352 520 335 16 37 chr5 100598707 100598896 -51938363 - B4A SINE B4 -100 192 8 2 1352 564 311 76 0 chr5 100598926 100599153 -51938106 - L1MB7 LINE L1 -450 5729 5485 2 1352 1028 180 91 16 chr5 100599176 100599362 -51937897 + B3 SINE B2 3 202 -14 2 1352 7215 92 40 14 chr5 100599378 100600418 -51936841 + Lx LINE L1 5587 6653 -1 2 1352 1350 262 72 9 chr5 100600484 100601192 -51936067 - L1MB7 LINE L1 -697 5467 4704 2 1352 490 291 47 5 chr5 100601445 100601659 -51935600 - L1MB7 LINE L1 -1431 4715 4493 2 1352 671 253 80 36 chr5 100601659 100601862 -51935397 - B3 SINE B2 0 216 9 2 1352 628 268 191 20 chr5 100601865 100602257 -51935002 - L1MB7 LINE L1 -1675 4471 4013 2 1352 361 299 51 58 chr5 100602331 100602487 -51934772 - L1MC LINE L1 -2068 5814 5660 2 1352 516 302 65 0 chr5 100602502 100602580 -51934679 + ID SINE ID 1 89 -135 2 1352 385 238 76 0 chr5 100602580 100602685 -51934574 + PB1D10 SINE Alu 4 116 -1 2 1352 188 67 0 32 chr5 100602988 100603019 -51934240 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 2 1352 218 179 0 0 chr5 100603131 100603170 -51934089 + CT-rich Low_complexity Low_complexity 2 40 0 2 1352 512 208 37 9 chr5 100603192 100603299 -51933960 + ID_B1 SINE B4 108 217 -7 2 1352 264 111 85 85 chr5 100603251 100603310 -51933949 + PB1D10 SINE Alu 59 117 0 2 1352 217 0 61 0 chr5 100604419 100604452 -51932807 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1352 459 0 0 0 chr5 100604554 100604605 -51932654 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1352 1239 84 18 0 chr5 100605646 100605813 -51931446 - B2_Mm2 SINE B2 -24 171 2 2 1352 357 187 0 0 chr5 100606376 100606451 -51930808 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 1352 222 62 0 0 chr5 100606664 100606696 -51930563 + (C)n Simple_repeat Simple_repeat 1 32 0 2 1352 243 324 54 27 chr5 100606949 100607060 -51930199 + L2a LINE L2 3277 3390 -36 2 1352 222 287 103 0 chr5 100607162 100607249 -51930010 - MIR SINE MIR 0 262 167 2 1352 864 324 48 13 chr5 100607444 100607816 -51929443 - MLT1B LTR MaLR -5 385 1 2 1352 351 0 0 0 chr5 100608134 100608173 -51929086 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1352 180 273 0 0 chr5 100608812 100608889 -51928370 + CT-rich Low_complexity Low_complexity 2 78 0 2 1352 370 311 0 0 chr5 100608890 100608993 -51928266 - PB1D10 SINE Alu -10 107 5 2 1352 295 233 31 72 chr5 100609291 100609388 -51927871 + PB1D10 SINE Alu 24 116 -1 2 1352 505 248 50 13 chr5 100609853 100610012 -51927247 + L1MC5 LINE L1 7696 7860 -101 2 1352 392 314 148 45 chr5 100610587 100610924 -51926335 + LTR16A1 LTR ERVL 85 456 0 2 1352 408 264 45 5 chr5 100611330 100611440 -51925819 - PB1D10 SINE Alu -22 127 13 2 1352 1593 271 64 32 chr5 100613818 100614321 -51922938 - Lx8 LINE L1 -496 6977 6459 2 1352 304 143 21 52 chr5 100614569 100614665 -51922594 + GA-rich Low_complexity Low_complexity 2 94 0 2 1352 198 0 0 0 chr5 100615332 100615354 -51921905 + (GA)n Simple_repeat Simple_repeat 1 22 0 2 1352 188 32 0 88 chr5 100615583 100615617 -51921642 + (CCCCCT)n Simple_repeat Simple_repeat 2 32 0 2 1352 241 298 102 39 chr5 100616365 100616571 -51920688 - RLTR21 LTR ERVK -268 1304 1086 2 1352 388 253 169 86 chr5 100617067 100617334 -51919925 + MLT1A LTR MaLR 73 408 0 2 1352 1327 156 9 30 chr5 100617653 100617884 -51919375 - URR1A DNA MER1_type 0 226 1 2 1352 317 179 15 0 chr5 100618083 100618150 -51919109 - B1_Mur4 SINE Alu -82 68 1 2 1352 326 329 87 55 chr5 100618260 100618561 -51918698 + MLT1G1 LTR MaLR 188 565 -14 2 1352 618 224 151 0 chr5 100618728 100618907 -51918352 - B3 SINE B2 -10 206 1 2 1352 456 19 0 0 chr5 100619255 100619308 -51917951 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1352 413 286 159 25 chr5 100619695 100619978 -51917281 + L1MC3 LINE L1 7457 7777 -8 2 1352 528 250 9 0 chr5 100619982 100620090 -51917169 + PB1D10 SINE Alu 1 109 -8 2 1352 223 346 55 18 chr5 100621085 100621100 -51916159 + B4 SINE B4 71 89 -203 2 1352 485 307 0 17 chr5 100621100 100621244 -51916015 + B1F SINE Alu 1 136 -13 2 1352 22 0 0 0 chr5 100621310 100621332 -51915927 + AT_rich Low_complexity Low_complexity 1 22 0 2 1352 551 230 79 0 chr5 100621447 100621573 -51915686 - Lx8 LINE L1 -479 6994 6859 2 1352 329 236 96 68 chr5 100622340 100622517 -51914742 + L1MC5 LINE L1 7749 7930 -31 2 1352 192 0 24 95 chr5 100622702 100622744 -51914515 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2 1352 567 188 196 0 chr5 100622745 100622857 -51914402 - B1_Mur3 SINE Alu -13 136 3 2 1352 280 296 92 31 chr5 100623101 100623211 -51914048 + MLT1F1 LTR MaLR 416 550 -19 2 1352 256 162 49 42 chr5 100623244 100623386 -51913873 + (CA)n Simple_repeat Simple_repeat 2 144 0 2 1352 268 127 46 31 chr5 100623403 100623468 -51913791 + (CATA)n Simple_repeat Simple_repeat 4 69 0 2 1352 586 124 46 29 chr5 100623477 100623651 -51913608 + (CA)n Simple_repeat Simple_repeat 2 178 0 2 1352 268 194 44 15 chr5 100623653 100623721 -51913538 + (CATA)n Simple_repeat Simple_repeat 2 71 0 2 1352 503 169 34 23 chr5 100623722 100623898 -51913361 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1352 300 53 0 0 chr5 100624642 100624680 -51912579 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1352 422 182 16 49 chr5 100624743 100624928 -51912331 + (TATG)n Simple_repeat Simple_repeat 2 180 0 2 1352 277 104 20 20 chr5 100624934 100624983 -51912276 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1352 227 300 17 0 chr5 100624983 100625043 -51912216 - RSINE1 SINE B4 -2 163 103 2 1352 371 298 113 60 chr5 100625070 100625238 -51912021 - B4A SINE B4 -106 186 10 2 1352 402 321 102 102 chr5 100626382 100626756 -51910503 + MLT1C LTR MaLR 94 467 0 2 1352 306 305 77 17 chr5 100627244 100627400 -51909859 - MIR SINE MIR -24 184 18 2 1352 547 254 42 7 chr5 100627477 100627620 -51909639 + B1F1 SINE Alu 1 148 -1 2 1352 237 179 18 18 chr5 100627946 100628003 -51909256 + B1F SINE Alu 2 58 -91 2 1352 237 189 38 0 chr5 100628003 100628056 -51909203 + (CACG)n Simple_repeat Simple_repeat 4 58 0 2 1352 795 78 0 0 chr5 100628829 100628932 -51908327 - B1_Mm SINE Alu 0 147 45 2 1352 312 246 99 58 chr5 100628851 100628972 -51908287 - RLTR25B LTR ERVK -507 521 396 2 1352 1219 22 0 0 chr5 100630791 100630929 -51906330 + B1_Mus1 SINE Alu 2 139 -9 2 1352 459 185 32 29 chr5 100631033 100631316 -51905943 + (CA)n Simple_repeat Simple_repeat 1 284 0 2 1352 723 172 0 0 chr5 100631882 100632016 -51905243 + CT-rich Low_complexity Low_complexity 4 137 0 2 1352 208 0 62 0 chr5 100632672 100632704 -51904555 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2 1352 2378 110 18 39 chr5 100632704 100633092 -51904167 - Lx2 LINE L1 -21 6976 6597 2 1352 436 382 82 28 chr5 100633516 100633807 -51903452 + LTR16B1 LTR ERVL 169 475 -5 2 1352 741 205 0 0 chr5 100634331 100634640 -51902619 + (CA)n Simple_repeat Simple_repeat 1 309 0 2 1352 207 0 0 0 chr5 100634640 100634663 -51902596 + (CTA)n Simple_repeat Simple_repeat 3 25 0 2 1352 1127 152 0 106 chr5 100635108 100635343 -51901916 + URR1A DNA MER1_type 1 210 -16 2 1352 263 248 106 35 chr5 100635500 100635642 -51901617 + Lx8 LINE L1 7300 7451 -22 2 1352 447 68 0 0 chr5 100636066 100636125 -51901134 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1352 187 227 15 15 chr5 100636495 100636562 -51900697 + GA-rich Low_complexity Low_complexity 4 70 0 2 1352 462 270 101 0 chr5 100638623 100638771 -51898488 - ID_B1 SINE B4 -29 195 33 2 1352 222 37 0 0 chr5 100638958 100638985 -51898274 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1352 429 239 340 38 chr5 100639229 100639458 -51897801 - MLT1B LTR MaLR -32 358 61 2 1352 3484 174 41 26 chr5 100639492 100640163 -51897096 + RMER19B LTR ERVK 1 896 -6 2 1352 250 257 67 13 chr5 100640575 100640650 -51896609 - ID4_ SINE ID -1 82 4 2 1352 734 264 72 10 chr5 100640673 100640868 -51896391 - B3 SINE B2 -8 208 2 2 1352 502 244 14 71 chr5 100640886 100641027 -51896232 - ID_B1 SINE B4 -5 219 87 2 1352 718 165 18 0 chr5 100641121 100641285 -51895974 + (TCCA)n Simple_repeat Simple_repeat 4 170 0 2 1352 1059 64 0 0 chr5 100641288 100641428 -51895831 + (TTTC)n Simple_repeat Simple_repeat 3 142 0 2 1352 226 281 15 15 chr5 100641656 100641721 -51895538 + CT-rich Low_complexity Low_complexity 3 67 0 2 1352 180 0 0 0 chr5 100642382 100642402 -51894857 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1352 641 358 71 57 chr5 100642544 100643053 -51894206 + MTE-int LTR MaLR 1 516 -1064 3 1352 695 188 58 27 chr5 100643153 100643341 -51893918 - RMER17C LTR ERVK -562 344 1 3 1352 1157 185 19 19 chr5 100645020 100645229 -51892030 + B3 SINE B2 2 210 -6 3 1352 234 246 114 99 chr5 100646898 100647029 -51890230 + ORR1E LTR MaLR 83 215 -144 3 1352 1373 70 37 21 chr5 100648642 100648832 -51888427 - B2_Mm2 SINE B2 -1 194 2 3 1352 234 0 0 0 chr5 100648887 100648913 -51888346 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1352 183 80 0 0 chr5 100648997 100649022 -51888237 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 1352 437 208 112 9 chr5 100649051 100649158 -51888101 - RSINE1 SINE B4 -46 119 2 3 1352 375 311 49 0 chr5 100650121 100650273 -51886986 - L1_Rod LINE L1 -70 5810 5622 3 1352 615 205 125 13 chr5 100650792 100651024 -51886235 - L1MA7 LINE L1 -3 6288 6031 3 1352 700 179 0 16 chr5 100651025 100651207 -51886052 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1352 1190 259 81 23 chr5 100651236 100651679 -51885580 - L1MA7 LINE L1 -275 6016 5548 3 1352 266 171 0 12 chr5 100651680 100651708 -51885551 + polypurine Low_complexity Low_complexity 3 30 0 3 1352 975 117 0 0 chr5 100651708 100651888 -51885371 + (GGA)n Simple_repeat Simple_repeat 1 180 0 3 1352 266 171 0 12 chr5 100651888 100651908 -51885351 + polypurine Low_complexity Low_complexity 31 50 0 3 1352 1053 96 0 0 chr5 100651908 100652086 -51885173 + (GGA)n Simple_repeat Simple_repeat 3 180 0 3 1352 266 171 0 12 chr5 100652086 100652119 -51885140 + polypurine Low_complexity Low_complexity 51 83 0 3 1352 1092 107 0 1 chr5 100652121 100652946 -51884313 + (GGA)n Simple_repeat Simple_repeat 1 824 0 3 1352 271 258 79 0 chr5 100652951 100653040 -51884219 - L1MA7 LINE L1 -797 5503 5408 3 1352 237 169 169 0 chr5 100653053 100653112 -51884147 - L1MB7 LINE L1 -1 6183 6115 3 1352 663 232 12 72 chr5 100653294 100653461 -51883798 - RSINE1 SINE B4 -2 163 7 3 1352 370 288 39 19 chr5 100653461 100653617 -51883642 - L1MB8 LINE L1 -242 5936 5778 3 1352 455 308 65 21 chr5 100653986 100654172 -51883087 - MIR SINE MIR -6 256 63 3 1352 270 266 144 88 chr5 100654188 100654382 -51882877 - MIR SINE MIR -45 217 13 3 1352 202 348 239 25 chr5 100654550 100654709 -51882550 - MIRb SINE MIR -13 255 63 3 1352 207 167 0 0 chr5 100655088 100655124 -51882135 + C-rich Low_complexity Low_complexity 1 36 0 3 1352 189 0 0 0 chr5 100655126 100655147 -51882112 + (TC)n Simple_repeat Simple_repeat 1 21 0 3 1352 1247 28 0 0 chr5 100655546 100655690 -51881569 + B1_Mus1 SINE Alu 5 148 0 3 1352 281 276 26 26 chr5 100656301 100656379 -51880880 + MIRc SINE MIR 69 146 -122 3 1352 347 356 124 36 chr5 100656385 100656659 -51880600 - L2a LINE L2 -11 3415 3118 3 1352 254 341 86 34 chr5 100656771 100656980 -51880279 - L2a LINE L2 -645 2774 2555 3 1352 1286 231 94 21 chr5 100657087 100657427 -51879832 - MTD LTR MaLR -44 375 11 3 1352 1204 112 6 22 chr5 100657503 100657686 -51879573 + B2_Mm2 SINE B2 1 180 -15 3 1352 230 317 24 24 chr5 100658000 100658084 -51879175 + LTR16A LTR ERVL 7 90 -361 3 1352 2559 124 118 29 chr5 100658124 100658605 -51878654 + RLTR28 LTR ERVL 1 524 0 3 1352 229 413 14 14 chr5 100658657 100658802 -51878457 + LTR16A LTR ERVL 269 413 -38 3 1352 3132 151 86 11 chr5 100658809 100659344 -51877915 + RMER15 LTR ERVL 1 575 0 3 1352 409 229 9 71 chr5 100660224 100660337 -51876922 + PB1D10 SINE Alu 11 116 -1 3 1352 1380 67 0 0 chr5 100662018 100662352 -51874907 + (TG)n Simple_repeat Simple_repeat 1 334 0 3 1352 243 274 18 97 chr5 100662813 100662926 -51874333 + MT2B2 LTR ERVL 155 258 -326 3 1352 508 280 23 23 chr5 100662832 100662960 -51874299 + B1F1 SINE Alu 10 137 -12 3 1352 284 281 0 0 chr5 100662960 100663024 -51874235 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1352 291 203 0 0 chr5 100663026 100663095 -51874164 + (TA)n Simple_repeat Simple_repeat 1 69 0 3 1352 227 178 25 50 chr5 100663099 100663259 -51874000 + (TTATA)n Simple_repeat Simple_repeat 2 157 0 3 1353 2626 130 70 5 chr5 100663368 100663809 -51873450 - RLTR44D LTR ERVK -16 470 1 3 1353 21973 37 52 1 chr5 100663809 100666478 -51870781 - RLTR44-int LTR ERVK 0 2812 8 3 1353 2821 110 69 2 chr5 100666488 100666936 -51870323 - RLTR44D LTR ERVK -8 478 1 3 1353 330 268 120 36 chr5 100666936 100667130 -51870129 - MLT2B1 LTR ERVL -21 546 280 3 1353 226 284 0 15 chr5 100667275 100667343 -51869916 + LTR82B Low_complexity ERVL 73 139 -691 3 1353 333 0 0 0 chr5 100668259 100668296 -51868963 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1353 288 0 0 0 chr5 100668296 100668327 -51868932 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1353 476 167 8 0 chr5 100668517 100668637 -51868622 + (CA)n Simple_repeat Simple_repeat 2 122 0 3 1353 230 174 0 21 chr5 100668641 100668688 -51868571 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 3 1353 207 0 0 0 chr5 100669335 100669358 -51867901 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1353 246 217 116 0 chr5 100669509 100669578 -51867681 + ID4 SINE ID 1 77 -6 3 1353 622 138 236 0 chr5 100669911 100670034 -51867225 - URR1A DNA MER1_type 0 226 75 3 1353 762 237 62 31 chr5 100672263 100672455 -51864804 + B3A SINE B2 1 198 0 3 1353 230 128 0 41 chr5 100673184 100673205 -51864054 + polypurine Low_complexity Low_complexity 2 21 0 3 1353 1326 78 0 0 chr5 100673205 100673385 -51863874 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1353 230 128 0 41 chr5 100673385 100673412 -51863847 + polypurine Low_complexity Low_complexity 22 48 0 3 1353 336 342 45 35 chr5 100674195 100674395 -51862864 + L1MCc LINE L1 352 553 -5870 3 1353 549 0 0 0 chr5 100674490 100674551 -51862708 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1353 413 302 67 0 chr5 100675035 100675154 -51862105 - RSINE1 SINE B4 -36 129 3 3 1353 244 216 29 19 chr5 100675605 100675709 -51861550 + (CA)n Simple_repeat Simple_repeat 1 105 0 3 1353 363 211 35 18 chr5 100675733 100675902 -51861357 + (CA)n Simple_repeat Simple_repeat 2 173 0 3 1353 251 221 40 16 chr5 100675927 100676051 -51861208 + (CA)n Simple_repeat Simple_repeat 1 127 0 3 1353 370 221 29 17 chr5 100676076 100676251 -51861008 + (CA)n Simple_repeat Simple_repeat 1 177 0 3 1353 200 329 12 12 chr5 100677227 100677310 -51859949 + L2b LINE L2 3288 3370 -5 3 1353 506 197 76 21 chr5 100678020 100678165 -51859094 + L1MC1 LINE L1 62 214 -6294 3 1353 381 204 43 112 chr5 100678180 100678296 -51858963 + URR1B DNA MER1_type 59 166 -59 3 1353 299 356 43 35 chr5 100678328 100678558 -51858701 + L1MC1 LINE L1 218 449 -6059 3 1353 1782 162 115 16 chr5 100678554 100678669 -51858590 - Lx6 LINE L1 -4 7456 7329 3 1353 612 0 0 0 chr5 100678669 100678737 -51858522 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1353 1782 162 115 16 chr5 100678737 100678985 -51858274 - Lx6 LINE L1 -132 7328 7058 3 1353 1159 264 188 118 chr5 100678975 100680641 -51856618 + L1MC1 LINE L1 435 2216 -4292 3 1353 501 243 10 0 chr5 100680645 100680748 -51856511 + PB1D10 SINE Alu 4 107 -10 3 1353 204 40 0 0 chr5 100680749 100680774 -51856485 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 3 1353 379 240 162 9 chr5 100680775 100680875 -51856384 + B3A SINE B2 4 119 -79 3 1353 333 0 0 0 chr5 100680875 100680912 -51856347 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1353 1584 273 137 41 chr5 100680916 100681534 -51855725 + L1MC1 LINE L1 4625 5305 -1016 3 1353 959 108 22 17 chr5 100681534 100681712 -51855547 + (GGGAGA)n Simple_repeat Simple_repeat 1 179 0 3 1353 1584 273 137 41 chr5 100681712 100681877 -51855382 + L1MC1 LINE L1 5306 5483 -838 3 1353 1133 166 48 5 chr5 100681877 100682083 -51855176 + B3 SINE B2 1 215 -1 3 1353 1789 295 71 17 chr5 100682130 100682833 -51854426 + L1MC1 LINE L1 5493 6233 -275 3 1353 664 284 99 34 chr5 100682846 100683079 -51854180 - B4A SINE B4 -44 248 1 3 1353 332 43 22 0 chr5 100683467 100683513 -51853746 + (CCCCCG)n Simple_repeat Simple_repeat 4 50 0 3 1353 231 284 0 82 chr5 100683541 100683614 -51853645 + MLT1J LTR MaLR 392 458 -54 3 1353 225 342 40 0 chr5 100683812 100683888 -51853371 - MER115 DNA Tip100 -450 243 165 3 1353 519 17 0 0 chr5 100685889 100685949 -51851310 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1353 245 295 26 0 chr5 100685974 100686052 -51851207 - ID4_ SINE ID -3 80 1 3 1353 816 65 0 0 chr5 100686922 100687029 -51850230 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 3 1353 928 79 129 0 chr5 100687031 100687170 -51850089 - B2_Mm2 SINE B2 -38 157 1 3 1353 291 28 0 0 chr5 100688286 100688322 -51848937 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 3 1353 1345 149 189 31 chr5 100688977 100689331 -51847928 - RMER17C LTR ERVK 0 410 1 3 1353 287 195 0 25 chr5 100689405 100689484 -51847775 + G-rich Low_complexity Low_complexity 5 81 0 3 1353 306 301 88 0 chr5 100689965 100690078 -51847181 - MER33 DNA MER1_type -17 307 185 3 1353 748 308 34 11 chr5 100690094 100690357 -51846902 + B4A SINE B4 7 275 -17 3 1353 380 55 0 18 chr5 100690375 100690431 -51846828 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1353 510 333 0 0 chr5 100690485 100690638 -51846621 - MER33 DNA MER1_type -171 153 1 3 1353 370 208 90 40 chr5 100690714 100690814 -51846445 + MT2B LTR ERVL 174 278 -323 3 1353 707 144 10 0 chr5 100690725 100690829 -51846430 + B1_Mur2 SINE Alu 34 138 -11 3 1353 508 303 94 75 chr5 100691532 100691624 -51845635 - Lx8 LINE L1 -40 7433 7330 3 1353 945 214 261 0 chr5 100691624 100691919 -51845340 + ORR1D1 LTR MaLR 1 372 -2 3 1353 508 303 94 75 chr5 100691919 100692144 -51845115 - Lx8 LINE L1 -144 7329 7110 3 1353 12161 21 0 0 chr5 100692145 100694207 -51843052 - L1Md_T LINE L1 0 6582 4521 3 1353 877 295 38 22 chr5 100694203 100694522 -51842737 - Lx8 LINE L1 -333 7140 6817 3 1353 230 235 59 0 chr5 100694623 100694674 -51842585 + ID4 SINE ID 26 79 -4 3 1353 302 294 63 8 chr5 100694720 100694847 -51842412 + L1MC4 LINE L1 7692 7825 -217 3 1353 626 202 6 0 chr5 100694927 100695095 -51842164 + (CA)n Simple_repeat Simple_repeat 1 169 0 3 1353 344 190 62 25 chr5 100695676 100695757 -51841502 + PB1D7 SINE Alu 35 118 -2 3 1353 571 233 58 0 chr5 100696641 100696761 -51840498 - B1F SINE Alu -20 129 3 3 1353 306 0 0 0 chr5 100696809 100696843 -51840416 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1353 911 253 18 67 chr5 100696857 100697141 -51840118 - B4A SINE B4 -22 270 1 3 1353 773 270 128 30 chr5 100697180 100697340 -51839919 + Lx8 LINE L1 7147 7307 -166 3 1353 1962 187 49 96 chr5 100697340 100697808 -51839451 - RLTR41 LTR ERV1 0 446 1 3 1353 773 270 128 30 chr5 100697808 100697945 -51839314 + Lx8 LINE L1 7308 7473 0 3 1353 1599 38 0 0 chr5 100697955 100698140 -51839119 + B2_Mm1a SINE B2 2 186 -7 3 1353 1157 242 38 139 chr5 100698318 100698368 -51838891 + MTE2a LTR MaLR 4 47 -332 3 1353 1223 61 0 0 chr5 100698368 100698515 -51838744 + B1_Mus1 SINE Alu 2 148 0 4 1353 1157 242 38 139 chr5 100698515 100698882 -51838377 + MTE2a LTR MaLR 48 379 0 3 1353 1153 279 118 74 chr5 100698899 100699068 -51838191 + L1MC4 LINE L1 6751 6947 -1095 4 1353 409 244 0 0 chr5 100699068 100699150 -51838109 + ID2 SINE ID 2 83 0 4 1353 1153 279 118 74 chr5 100699150 100699868 -51837391 + L1MC4 LINE L1 6948 7677 -365 4 1353 4428 45 3 24 chr5 100700627 100700854 -51836405 + LTRIS2 LTR ERV1 3 224 -340 4 1353 3005 82 16 131 chr5 100700854 100701398 -51835861 - RLTR45 LTR ERVK 0 482 1 4 1353 4428 45 3 24 chr5 100701398 100701744 -51835515 + LTRIS2 LTR ERV1 225 564 0 4 1353 343 306 182 61 chr5 100702127 100702457 -51834802 + MER21B LTR ERV1 223 592 -271 4 1353 980 278 21 59 chr5 100702444 100702734 -51834525 + B4A SINE B4 14 292 0 4 1353 198 257 82 41 chr5 100703114 100703187 -51834072 + L2c LINE L2 3276 3351 -36 4 1353 245 150 0 0 chr5 100704210 100704250 -51833009 + Lx8 LINE L1 3895 3934 -1946 4 1353 3764 261 81 34 chr5 100704250 100705639 -51831620 + Lx8 LINE L1 3896 5350 -530 4 1353 550 189 6 6 chr5 100705667 100705843 -51831416 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 1353 520 105 0 34 chr5 100705881 100705999 -51831260 + (TCTG)n Simple_repeat Simple_repeat 1 114 0 4 1353 595 172 0 18 chr5 100706010 100706141 -51831118 + Lx8 LINE L1 5356 5512 -788 4 1353 2640 297 89 30 chr5 100706625 100707928 -51829331 + Lx8 LINE L1 5469 6882 -591 4 1353 817 273 74 50 chr5 100707919 100707980 -51829279 + Lx8 LINE L1 7144 7200 -273 4 1353 2332 98 3 3 chr5 100707980 100708306 -51828953 + ORR1A3 LTR MaLR 1 326 0 4 1353 817 273 74 50 chr5 100708306 100708541 -51828718 + Lx8 LINE L1 7201 7447 -26 4 1353 331 270 186 18 chr5 100709553 100709779 -51827480 - L1MC4 LINE L1 -4873 1342 1079 4 1353 905 261 28 0 chr5 100709780 100709998 -51827261 - ID_B1 SINE B4 0 224 1 4 1353 929 170 12 18 chr5 100710115 100710283 -51826976 + B2_Mm2 SINE B2 2 168 -27 4 1353 231 36 0 0 chr5 100710310 100710338 -51826921 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 4 1353 243 305 100 15 chr5 100710486 100710616 -51826643 + MIR SINE MIR 33 173 -89 4 1353 1366 77 55 6 chr5 100710833 100711016 -51826243 - B2_Mm2 SINE B2 -2 193 2 4 1353 630 329 74 17 chr5 100711151 100711501 -51825758 + L1MCa LINE L1 202 571 -5937 4 1353 920 131 29 0 chr5 100711502 100711639 -51825620 + B1_Mus2 SINE Alu 2 142 -5 4 1353 267 152 40 56 chr5 100711648 100711773 -51825486 + GA-rich Low_complexity Low_complexity 4 126 0 4 1353 3293 38 8 5 chr5 100711854 100712249 -51825010 - MTA_Mm LTR MaLR 0 396 1 4 1353 3642 176 68 50 chr5 100712632 100712927 -51824332 - RMER1A Other Other -5 1025 737 4 1353 1676 36 0 0 chr5 100712927 100713120 -51824139 - B2_Mm1a SINE B2 0 193 1 4 1353 3642 214 34 65 chr5 100713120 100714054 -51823205 - RMER1A Other Other -294 736 18 4 1353 252 265 44 0 chr5 100714091 100714159 -51823100 + B3 SINE B2 146 216 0 4 1353 1401 82 0 15 chr5 100714230 100714427 -51822832 + B2_Mm2 SINE B2 1 194 -1 4 1353 457 294 33 25 chr5 100714427 100714549 -51822710 + B3A SINE B2 29 151 -47 4 1353 282 217 158 32 chr5 100714619 100714714 -51822545 - RMER15 LTR ERVL -368 207 101 4 1353 291 104 0 0 chr5 100715726 100715774 -51821485 + (CGAA)n Simple_repeat Simple_repeat 2 49 0 4 1353 465 280 124 28 chr5 100715805 100716095 -51821164 + L1MCa LINE L1 1323 1640 -4868 4 1353 2338 144 86 0 chr5 100716114 100716511 -51820748 + ORR1B1-int LTR MaLR 1079 1509 0 4 1353 1387 117 143 16 chr5 100716511 100716648 -51820611 + ORR1B1 LTR MaLR 1 160 -234 4 1353 324 0 0 0 chr5 100716648 100716684 -51820575 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1353 1387 139 116 24 chr5 100716684 100716838 -51820421 + ORR1B1 LTR MaLR 98 284 -110 4 1353 1084 202 53 80 chr5 100717066 100717440 -51819819 + RMER16 LTR ERVK 1 533 0 4 1353 7017 154 75 29 chr5 100717442 100718789 -51818470 + RMER16-int LTR ERVK 2 1410 -3996 4 1353 2048 139 70 76 chr5 100718789 100719186 -51818073 + RMER16-int LTR ERVK 3579 3973 -1433 4 1353 6297 125 55 32 chr5 100719359 100720414 -51816845 + RMER16-int LTR ERVK 4328 5406 0 4 1353 740 225 80 87 chr5 100720414 100720591 -51816668 + RMER16 LTR ERVK 1 314 -219 4 1353 2448 98 6 0 chr5 100720591 100720916 -51816343 + ORR1A2 LTR MaLR 1 327 0 4 1353 740 255 106 87 chr5 100720916 100721133 -51816126 + RMER16 LTR ERVK 315 532 -1 4 1353 970 83 15 0 chr5 100721198 100721331 -51815928 + ORR1B1 LTR MaLR 260 394 0 4 1353 619 284 38 38 chr5 100721568 100721603 -51815656 - B3A SINE B2 -1 197 167 4 1353 417 39 0 0 chr5 100721603 100721654 -51815605 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1353 619 284 38 38 chr5 100721654 100721801 -51815458 - B3A SINE B2 -32 166 15 4 1353 295 240 160 0 chr5 100722187 100722262 -51814997 - PB1D10 SINE Alu -30 87 1 4 1353 376 227 96 64 chr5 100723646 100723834 -51813425 - CYRA11_Mm Unknown Y-chromosome -252 365 172 4 1353 942 114 0 0 chr5 100723695 100723835 -51813424 + URR1A DNA MER1_type 87 226 0 4 1353 674 279 98 0 chr5 100723840 100724044 -51813215 + ID_B1 SINE B4 1 224 0 4 1353 252 268 61 0 chr5 100724056 100724138 -51813121 + MIR SINE MIR 121 207 -55 4 1353 188 35 35 0 chr5 100724689 100724718 -51812541 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 1353 516 92 18 18 chr5 100724743 100724854 -51812405 + (TTTTG)n Simple_repeat Simple_repeat 1 111 0 4 1353 246 227 0 0 chr5 100725481 100725556 -51811703 + (TGG)n Simple_repeat Simple_repeat 2 76 0 4 1353 282 325 52 62 chr5 100725673 100725912 -51811347 - MIRb SINE MIR -33 235 2 4 1353 962 204 154 37 chr5 100727306 100727631 -51809628 - RLTR25A LTR ERVK 0 1028 666 4 1353 2409 186 92 16 chr5 100727626 100728117 -51809142 - RLTR25A LTR ERVK -575 528 1 4 1353 569 241 160 93 chr5 100728155 100728483 -51808776 + MLT1F1 LTR MaLR 218 569 0 4 1353 629 211 58 47 chr5 100728690 100728899 -51808360 + RMER20B LTR ERVK 1 212 -304 4 1353 288 0 0 0 chr5 100729035 100729067 -51808192 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1353 962 9 0 0 chr5 100729067 100729179 -51808080 - B1_Mus1 SINE Alu -8 140 29 4 1353 217 367 59 20 chr5 100729872 100730025 -51807234 - MIR SINE MIR -15 247 89 4 1353 2098 114 3 7 chr5 100730204 100730504 -51806755 - ORR1A2 LTR MaLR 0 327 29 4 1353 469 148 0 0 chr5 100730522 100730610 -51806649 - ORR1A2 LTR MaLR -239 88 1 4 1353 260 266 0 0 chr5 100730677 100730741 -51806518 - MIRb SINE MIR -5 263 200 4 1353 208 276 186 56 chr5 100730687 100730848 -51806411 - L2a LINE L2 -19 3407 3226 4 1353 5581 137 39 9 chr5 100730974 100731850 -51805409 + RMER19B LTR ERVK 1 902 0 4 1353 435 220 369 0 chr5 100731959 100732146 -51805113 + L1M3 LINE L1 5507 5762 -409 4 1353 308 219 51 28 chr5 100732244 100732346 -51804913 - MIRm SINE MIR -111 165 49 4 1353 258 290 29 0 chr5 100733006 100733075 -51804184 + B4A SINE B4 2 72 -220 4 1353 505 183 53 91 chr5 100733092 100733224 -51804035 + B4A SINE B4 166 292 0 4 1353 244 269 0 0 chr5 100733226 100733278 -51803981 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1353 495 255 18 9 chr5 100733590 100733701 -51803558 + MER20 DNA MER1_type 41 152 -67 4 1353 324 0 0 0 chr5 100734132 100734168 -51803091 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1353 477 34 0 0 chr5 100734168 100734226 -51803033 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1353 273 230 0 0 chr5 100734226 100734378 -51802881 + (TG)n Simple_repeat Simple_repeat 1 152 0 4 1353 341 222 6 0 chr5 100734396 100734567 -51802692 + (TG)n Simple_repeat Simple_repeat 1 172 0 4 1353 235 265 35 24 chr5 100734741 100734826 -51802433 - MER5A DNA MER1_type -24 165 80 4 1353 681 253 14 0 chr5 100734852 100734998 -51802261 + MTEa LTR MaLR 1 148 -231 4 1353 396 0 0 0 chr5 100735005 100735049 -51802210 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1353 289 302 159 13 chr5 100735064 100735215 -51802044 + MT2A LTR ERVL 286 458 -75 4 1353 359 232 94 10 chr5 100735318 100735414 -51801845 - PB1D10 SINE Alu 0 117 14 4 1353 250 333 33 53 chr5 100735357 100735509 -51801750 - ID_B1 SINE B4 -72 152 4 4 1353 688 251 90 63 chr5 100736132 100736400 -51800859 + Lx8 LINE L1 7177 7451 -22 4 1353 443 266 9 35 chr5 100736471 100736584 -51800675 + RSINE1 SINE B4 56 165 0 4 1353 342 98 0 0 chr5 100736592 100736643 -51800616 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1353 324 316 102 92 chr5 100737104 100737397 -51799862 + ORR1E LTR MaLR 30 325 -34 4 1353 603 251 0 0 chr5 100737417 100737824 -51799435 + (TG)n Simple_repeat Simple_repeat 1 407 0 4 1353 438 20 0 0 chr5 100738413 100738464 -51798795 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1353 290 152 56 0 chr5 100739157 100739282 -51797977 + (TG)n Simple_repeat Simple_repeat 2 133 0 4 1353 401 305 52 99 chr5 100739286 100739497 -51797762 + B4 SINE B4 84 284 -8 4 1353 549 99 0 0 chr5 100739532 100739613 -51797646 + (CATA)n Simple_repeat Simple_repeat 2 82 0 4 1353 2073 212 46 6 chr5 100739636 100740224 -51797035 + Lx9 LINE L1 7006 7635 -9 4 1353 232 279 0 62 chr5 100740348 100740413 -51796846 + tRNA-Ala-GCA tRNA tRNA 9 69 -6 4 1353 640 154 31 0 chr5 100740424 100740554 -51796705 + GA-rich Low_complexity Low_complexity 4 137 0 4 1353 1287 70 0 0 chr5 100740555 100740726 -51796533 + (GAGAA)n Simple_repeat Simple_repeat 4 174 0 4 1353 420 147 15 0 chr5 100740726 100740794 -51796465 + B1_Mus1 SINE Alu 23 91 -57 4 1353 254 29 0 28 chr5 100740798 100740834 -51796425 + (CCCCCT)n Simple_repeat Simple_repeat 4 38 0 4 1353 1387 65 35 5 chr5 100740887 100741087 -51796172 + L1_Mus3 LINE L1 6423 6628 -10 4 1353 197 294 0 58 chr5 100741272 100741359 -51795900 + MIR SINE MIR 92 180 -88 4 1353 231 315 14 80 chr5 100741633 100741771 -51795488 - YREP_Mm Unknown Unknown -1478 334 206 4 1353 560 228 10 9 chr5 100741650 100741775 -51795484 + ID_B1 SINE B4 79 197 -27 4 1353 373 207 14 177 chr5 100741669 100741810 -51795449 + B1_Mur1 SINE Alu 10 127 -22 4 1353 311 209 22 34 chr5 100741777 100741866 -51795393 + B1F SINE Alu 40 127 -22 4 1353 282 224 51 26 chr5 100741833 100741911 -51795348 + B1F2 SINE Alu 65 144 -5 4 1353 831 97 253 25 chr5 100742632 100742790 -51794469 + B2_Mm2 SINE B2 1 194 -1 4 1353 211 67 67 0 chr5 100742898 100742943 -51794316 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1353 243 286 16 0 chr5 100743284 100743347 -51793912 + MER34A1 LTR ERV1 225 288 -299 4 1353 829 255 93 52 chr5 100743372 100743449 -51793810 + Lx8 LINE L1 7115 7190 -283 4 1353 2479 74 0 58 chr5 100743449 100743795 -51793464 + ORR1A3 LTR MaLR 1 326 0 4 1353 829 255 93 52 chr5 100743795 100744060 -51793199 + Lx8 LINE L1 7191 7471 -2 4 1353 334 263 28 66 chr5 100745444 100745550 -51791709 + PB1D10 SINE Alu 1 102 -15 4 1353 272 270 154 42 chr5 100746179 100746322 -51790937 + MIR SINE MIR 16 174 -88 4 1353 365 266 92 15 chr5 100747284 100747414 -51789845 - B1F1 SINE Alu -1 148 9 5 1353 847 234 56 5 chr5 100747448 100747646 -51789613 + B3 SINE B2 1 208 -8 5 1353 371 0 0 0 chr5 100747817 100747866 -51789393 - L1Md_T LINE L1 -1 6581 6533 5 1353 458 81 165 5 chr5 100747980 100748093 -51789166 - B2_Mm2 SINE B2 -2 193 46 5 1353 1252 76 47 0 chr5 100748120 100748292 -51788967 - B2_Mm2 SINE B2 -14 181 2 5 1353 852 213 50 69 chr5 100748380 100748582 -51788677 - B3A SINE B2 0 198 1 5 1353 1279 68 45 17 chr5 100749594 100749773 -51787486 + B2_Mm2 SINE B2 6 189 -6 5 1353 572 125 10 0 chr5 100749773 100749869 -51787390 + (GGA)n Simple_repeat Simple_repeat 1 97 0 5 1353 412 269 115 0 chr5 100749904 100750034 -51787225 + ID_B1 SINE B4 77 221 -3 5 1353 441 36 0 0 chr5 100750111 100750166 -51787093 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1353 660 227 7 29 chr5 100750168 100750304 -51786955 - RSINE1 SINE B4 -32 133 1 5 1353 219 69 0 0 chr5 100750958 100750987 -51786272 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1353 352 204 7 49 chr5 100751507 100751651 -51785608 + C-rich Low_complexity Low_complexity 3 140 0 5 1353 1871 78 134 0 chr5 100752430 100752714 -51784545 - ORR1A2 LTR MaLR 0 327 6 5 1353 534 230 8 47 chr5 100752823 100752951 -51784308 + B3 SINE B2 20 142 -74 5 1353 482 46 0 15 chr5 100753367 100753433 -51783826 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 5 1353 196 345 162 21 chr5 100754371 100754513 -51782746 + MIR SINE MIR 32 193 -69 5 1353 743 197 7 42 chr5 100755340 100755483 -51781776 - B1_Mur1 SINE Alu -1 148 11 5 1353 253 327 0 119 chr5 100755381 100755499 -51781760 - MT2B LTR ERVL -338 263 160 5 1353 1982 192 50 9 chr5 100755652 100756072 -51781187 + Lx7 LINE L1 6779 7215 -481 5 1353 505 261 0 0 chr5 100756143 100756254 -51781005 + PB1D10 SINE Alu 5 115 -2 5 1353 643 159 35 12 chr5 100756270 100756442 -51780817 + GA-rich Low_complexity Low_complexity 1 176 0 5 1353 327 342 103 0 chr5 100756442 100756588 -51780671 + HAL1-3A_ME LINE L1 2284 2444 -414 5 1353 402 69 0 0 chr5 100759171 100759229 -51778030 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 5 1353 1250 41 0 0 chr5 100759234 100759380 -51777879 - B1_Mus2 SINE Alu -1 146 1 5 1353 284 272 0 132 chr5 100759887 100759993 -51777266 + PB1D10 SINE Alu 17 108 -9 5 1353 420 143 0 0 chr5 100760604 100760674 -51776585 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1353 298 252 240 0 chr5 100760674 100760778 -51776481 + RMER1B Other Other 462 578 -488 5 1353 1800 142 82 29 chr5 100760779 100761121 -51776138 + RMER1B Other Other 707 1066 0 5 1353 497 208 52 0 chr5 100761954 100762050 -51775209 - B1F SINE Alu -15 134 34 5 1353 268 362 137 52 chr5 100763322 100763483 -51773776 + MLT1C LTR MaLR 4 191 -276 5 1353 586 214 151 23 chr5 100763483 100763655 -51773604 + B3A SINE B2 3 196 -2 5 1353 268 362 137 52 chr5 100763655 100763915 -51773344 + MLT1C LTR MaLR 192 461 -6 5 1353 306 302 21 10 chr5 100763974 100764071 -51773188 - PB1D7 SINE Alu -7 113 16 5 1353 465 275 30 8 chr5 100764134 100764266 -51772993 + ID_B1 SINE B4 79 213 -11 5 1353 391 248 63 38 chr5 100764280 100764439 -51772820 + RSINE1 SINE B4 3 165 0 5 1353 192 234 0 0 chr5 100764471 100764518 -51772741 + GA-rich Low_complexity Low_complexity 1 47 0 5 1353 1971 228 24 2 chr5 100764652 100765074 -51772185 + RCHARR1 DNA MER1_type 542 972 -2 5 1353 228 360 35 0 chr5 100765865 100765951 -51771308 - MLT1A1 LTR MaLR -296 112 24 5 1353 531 204 26 0 chr5 100766139 100766252 -51771007 + RSINE1 SINE B4 31 146 -19 5 1353 375 239 74 47 chr5 100766311 100766460 -51770799 - L1MCa LINE L1 -4541 1967 1815 5 1353 23 33 0 0 chr5 100766474 100766504 -51770755 + AT_rich Low_complexity Low_complexity 1 30 0 5 1353 312 292 16 70 chr5 100766504 100766633 -51770626 - HAL1b LINE L1 -140 1869 1748 5 1353 423 0 0 0 chr5 100766646 100766693 -51770566 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1353 877 237 30 25 chr5 100767040 100767243 -51770016 + RLTR25B LTR ERVK 1 204 -824 5 1353 641 72 134 0 chr5 100767236 100767333 -51769926 + B2_Mm2 SINE B2 5 114 -81 5 1353 615 309 102 56 chr5 100767762 100768154 -51769105 + MLT1D LTR MaLR 1 475 -30 5 1353 435 228 78 16 chr5 100768309 100768438 -51768821 + B1F SINE Alu 5 141 -8 5 1353 1236 29 0 0 chr5 100768934 100769073 -51768186 + B1_Mm SINE Alu 1 139 -8 5 1353 248 70 0 23 chr5 100769073 100769117 -51768142 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 5 1353 305 200 129 0 chr5 100769765 100769835 -51767424 - MER46C DNA MER2_type -3 335 257 5 1353 3025 77 38 2 chr5 100770428 100770821 -51766438 + MTB_Mm LTR MaLR 1 407 0 5 1353 278 295 16 24 chr5 100771513 100771626 -51765633 + PB1D7 SINE Alu 29 136 -13 5 1353 240 271 57 0 chr5 100771855 100771925 -51765334 + B4A SINE B4 76 149 -143 5 1353 452 317 13 60 chr5 100771866 100772017 -51765242 + B1F1 SINE Alu 5 148 -1 5 1353 689 289 277 11 chr5 100772334 100772696 -51764563 + Lx8 LINE L1 7015 7472 -1 5 1353 242 279 44 103 chr5 100773122 100773258 -51764001 - MTEa LTR MaLR 0 379 252 5 1353 1716 26 0 0 chr5 100773279 100773471 -51763788 + B2_Mm1a SINE B2 1 192 -1 5 1353 565 338 119 20 chr5 100773594 100773887 -51763372 + MLT1A0 LTR MaLR 4 325 -40 5 1353 493 289 124 23 chr5 100774232 100774409 -51762850 + B3A SINE B2 1 195 -3 5 1353 2399 73 18 57 chr5 100774517 100774853 -51762406 - ORR1A2 LTR MaLR -4 323 1 5 1353 426 94 0 0 chr5 100774861 100774925 -51762334 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1353 396 0 0 0 chr5 100775725 100775769 -51761490 + (CCA)n Simple_repeat Simple_repeat 2 45 0 5 1353 416 244 8 63 chr5 100775857 100775984 -51761275 - PB1D7 SINE Alu 0 120 1 5 1353 302 80 20 0 chr5 100776094 100776144 -51761115 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1353 5168 94 6 7 chr5 100776208 100776937 -51760322 + L1_Mus3 LINE L1 5908 6635 -3 5 1353 841 162 12 6 chr5 100776937 100777105 -51760154 + GA-rich Low_complexity Low_complexity 1 169 0 5 1353 243 0 0 0 chr5 100777591 100777618 -51759641 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1353 377 248 118 9 chr5 100777618 100777728 -51759531 - B1F SINE Alu -10 139 18 5 1353 251 38 56 19 chr5 100777878 100777932 -51759327 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 5 1353 543 145 7 74 chr5 100778983 100779103 -51758156 + RMER17C LTR ERVK 1 89 -321 5 1353 433 304 74 46 chr5 100779107 100779159 -51758100 - MIRb SINE MIR -17 251 199 5 1353 578 14 14 0 chr5 100779159 100779230 -51758029 + (TA)n Simple_repeat Simple_repeat 1 72 0 5 1353 433 304 74 46 chr5 100779230 100779394 -51757865 - MIRb SINE MIR -70 198 29 5 1353 215 229 49 0 chr5 100779869 100780013 -51757246 + (CACTG)n Simple_repeat Simple_repeat 2 152 0 5 1353 387 260 45 0 chr5 100780076 100780351 -51756908 + (CACTG)n Simple_repeat Simple_repeat 1 287 0 5 1353 333 271 60 6 chr5 100780376 100780543 -51756716 + (CACTG)n Simple_repeat Simple_repeat 5 180 0 5 1353 694 270 6 6 chr5 100780562 100780726 -51756533 + RSINE1 SINE B4 2 165 0 5 1353 925 150 0 7 chr5 100781162 100781303 -51755956 + B1_Mur3 SINE Alu 1 140 -9 5 1353 195 42 0 0 chr5 100781305 100781329 -51755930 + (GA)n Simple_repeat Simple_repeat 1 24 0 5 1353 1019 110 0 0 chr5 100783142 100783278 -51753981 + B1_Mus1 SINE Alu 4 139 -9 5 1353 240 0 75 0 chr5 100783278 100783318 -51753941 + (CAA)n Simple_repeat Simple_repeat 2 44 0 5 1353 252 0 0 0 chr5 100785373 100785401 -51751858 + (CAA)n Simple_repeat Simple_repeat 3 30 0 5 1353 1216 41 7 0 chr5 100785497 100785643 -51751616 + B1_Mus1 SINE Alu 2 148 0 5 1353 1200 41 14 0 chr5 100785829 100785974 -51751285 - B1_Mus2 SINE Alu 0 147 1 5 1353 1348 212 58 26 chr5 100786055 100786365 -51750894 - RMER2 LTR ERV1 0 567 248 5 1353 204 269 9 27 chr5 100786750 100786861 -51750398 + GA-rich Low_complexity Low_complexity 3 111 0 5 1353 24 32 0 0 chr5 100786981 100787012 -51750247 + AT_rich Low_complexity Low_complexity 1 31 0 5 1353 219 279 34 34 chr5 100788032 100788121 -51749138 - MIR3 SINE MIR -8 200 112 5 1353 920 189 141 0 chr5 100788442 100788627 -51748632 + B3 SINE B2 1 211 -5 5 1353 270 226 19 0 chr5 100788937 100788990 -51748269 - B1F1 SINE Alu -89 60 7 5 1353 1103 126 93 0 chr5 100790178 100790361 -51746898 + URR1A DNA MER1_type 27 226 0 5 1353 567 257 32 26 chr5 100790456 100790612 -51746647 + RSINE1 SINE B4 4 160 -5 5 1353 251 243 70 14 chr5 100791726 100791797 -51745462 - ID4 SINE ID -1 82 8 5 1353 338 234 140 26 chr5 100791847 100791961 -51745298 - PB1 SINE Alu 0 127 1 5 1353 549 214 216 17 chr5 100792624 100792800 -51744459 - B3 SINE B2 -5 211 1 5 1353 354 214 162 19 chr5 100793332 100793437 -51743822 - PB1D7 SINE Alu 0 120 1 5 1353 1393 123 186 0 chr5 100793694 100793959 -51743300 + Lx4B LINE L1 6715 7056 -2 5 1354 220 299 0 0 chr5 100795018 100795085 -51742174 + A-rich Low_complexity Low_complexity 1 67 0 5 1354 184 264 0 100 chr5 100795090 100795170 -51742089 + L3 LINE CR1 917 988 -3501 5 1354 366 319 96 0 chr5 100795618 100795753 -51741506 + RSINE1 SINE B4 1 148 -17 5 1354 252 0 0 0 chr5 100795778 100795806 -51741453 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1354 997 143 199 6 chr5 100795848 100796024 -51741235 + B3 SINE B2 1 210 -6 5 1354 180 0 0 0 chr5 100796408 100796428 -51740831 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1354 287 269 0 0 chr5 100796428 100796495 -51740764 + PB1D9 SINE Alu 43 109 -11 6 1354 233 254 56 0 chr5 100797735 100797806 -51739453 + ID4_ SINE ID 3 77 -6 6 1354 998 131 63 42 chr5 100799982 100800173 -51737086 + B2_Mm2 SINE B2 1 195 0 6 1354 323 281 69 23 chr5 100801239 100801370 -51735889 + MER44B DNA MER2_type 300 436 -114 6 1354 217 255 274 39 chr5 100801850 100801952 -51735307 - RSINE1 SINE B4 -31 134 9 6 1354 390 194 38 11 chr5 100802876 100802975 -51734284 + ID4 SINE ID 6 103 -49 6 1354 340 237 14 70 chr5 100803692 100804047 -51733212 + (TG)n Simple_repeat Simple_repeat 1 335 0 6 1354 787 199 16 11 chr5 100805326 100805518 -51731741 + B3 SINE B2 1 195 0 6 1354 1452 79 0 5 chr5 100805786 100805976 -51731283 - B2_Mm2 SINE B2 -5 190 2 6 1354 558 238 0 40 chr5 100806198 100806347 -51730912 - B1_Mur1 SINE Alu -2 147 5 6 1354 624 234 13 54 chr5 100807066 100807215 -51730044 + B1_Mur1 SINE Alu 7 149 0 6 1354 222 207 17 0 chr5 100808471 100808501 -51728758 + (TA)n Simple_repeat Simple_repeat 2 32 0 6 1354 279 0 0 0 chr5 100808501 100808532 -51728727 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1354 222 207 17 0 chr5 100808532 100808544 -51728715 + (TA)n Simple_repeat Simple_repeat 2 13 0 6 1354 257 0 30 0 chr5 100808544 100808577 -51728682 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1354 222 207 17 0 chr5 100808577 100808591 -51728668 + (TA)n Simple_repeat Simple_repeat 2 15 0 6 1354 714 205 8 0 chr5 100808655 100808777 -51728482 + B1_Mur2 SINE Alu 21 143 -6 6 1354 622 243 178 6 chr5 100808788 100808962 -51728297 - B3 SINE B2 -6 210 7 6 1354 512 303 84 0 chr5 100809010 100809152 -51728107 + B3A SINE B2 1 154 -44 6 1354 258 318 33 56 chr5 100809500 100809590 -51727669 + RSINE1 SINE B4 5 92 -73 6 1354 22 80 0 0 chr5 100809753 100809803 -51727456 + AT_rich Low_complexity Low_complexity 1 50 0 6 1354 703 216 21 35 chr5 100809887 100810031 -51727228 + ID_B1 SINE B4 82 223 -1 6 1354 475 171 156 37 chr5 100810043 100810152 -51727107 + B1_Mm SINE Alu 26 147 -2 6 1354 182 214 123 18 chr5 100812290 100812347 -51724912 - MIRc SINE MIR -140 128 66 6 1354 1232 54 0 0 chr5 100812558 100812706 -51724553 - B1_Mus1 SINE Alu 0 148 1 6 1354 315 318 65 94 chr5 100813310 100813480 -51723779 + RSINE1 SINE B4 1 165 0 6 1354 183 156 0 0 chr5 100813747 100813779 -51723480 + (CAA)n Simple_repeat Simple_repeat 1 32 0 6 1354 363 302 0 20 chr5 100813809 100813907 -51723352 + PB1D10 SINE Alu 22 117 0 6 1354 894 175 7 0 chr5 100813928 100814065 -51723194 - B1_Mus2 SINE Alu -9 138 1 6 1354 2248 112 50 39 chr5 100814510 100814871 -51722388 + RLTR8 LTR ERVK 1 365 0 6 1354 254 247 21 12 chr5 100814991 100815070 -51722189 + PB1D10 SINE Alu 13 93 -56 6 1354 21 0 0 0 chr5 100815736 100815757 -51721502 + AT_rich Low_complexity Low_complexity 1 21 0 6 1354 27 0 0 0 chr5 100815776 100815803 -51721456 + AT_rich Low_complexity Low_complexity 1 27 0 6 1354 239 247 38 38 chr5 100816259 100816339 -51720920 + ID4_ SINE ID 2 81 -2 6 1354 350 205 58 74 chr5 100818406 100818527 -51718732 - PB1D9 SINE Alu -1 119 1 6 1354 965 72 247 7 chr5 100819077 100819231 -51718028 + B2_Mm2 SINE B2 1 191 -4 6 1354 795 206 7 0 chr5 100819243 100819384 -51717875 + B1_Mur4 SINE Alu 2 143 -7 6 1354 257 306 66 36 chr5 100819918 100820084 -51717175 - B3 SINE B2 -10 206 36 6 1354 648 205 0 0 chr5 100820112 100820224 -51717035 - B1_Mur2 SINE Alu -4 145 34 6 1354 236 254 113 84 chr5 100820261 100820403 -51716856 - B1F SINE Alu 0 149 4 6 1354 198 0 0 0 chr5 100820464 100820486 -51716773 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 6 1354 233 95 0 87 chr5 100820642 100820688 -51716571 + B4 SINE B4 185 226 -66 6 1354 378 161 204 11 chr5 100821106 100821194 -51716065 - PB1D10 SINE Alu -12 105 1 6 1354 864 117 131 28 chr5 100822715 100822891 -51714368 + B2_Mm2 SINE B2 2 195 0 6 1354 299 221 359 17 chr5 100823052 100823086 -51714173 + B4A SINE B4 44 125 -167 6 1354 293 229 193 0 chr5 100823086 100823169 -51714090 + PB1D9 SINE Alu 16 114 -6 6 1354 299 221 359 17 chr5 100823169 100823233 -51714026 + B4A SINE B4 126 286 -6 6 1354 307 317 0 0 chr5 100824202 100824284 -51712975 - ID4 SINE ID -1 82 1 6 1354 697 217 163 0 chr5 100824393 100824577 -51712682 + B3 SINE B2 1 214 -2 6 1354 393 103 0 0 chr5 100825041 100825109 -51712150 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1354 568 185 18 9 chr5 100825343 100825452 -51711807 + PB1D9 SINE Alu 1 110 -10 6 1354 549 0 0 0 chr5 100825452 100825513 -51711746 + (TAAAA)n Simple_repeat Simple_repeat 2 62 0 6 1354 391 255 88 94 chr5 100825845 100826005 -51711254 + RSINE1 SINE B4 5 163 -2 6 1354 538 266 102 34 chr5 100826013 100826219 -51711040 + B4A SINE B4 73 292 0 6 1354 345 224 14 56 chr5 100826384 100826455 -51710804 + ID4 SINE ID 14 81 -2 6 1354 677 254 41 31 chr5 100826472 100826667 -51710592 - B3A SINE B2 0 198 2 6 1354 659 197 64 36 chr5 100827032 100827214 -51710045 + ORR1D1 LTR MaLR 1 142 -184 6 1354 322 169 34 0 chr5 100827208 100827267 -51709992 + ORR1D1 LTR MaLR 310 370 -4 6 1354 1386 81 5 16 chr5 100827378 100827567 -51709692 + B2_Mm1a SINE B2 1 187 -6 6 1354 215 197 159 43 chr5 100828104 100828173 -51709086 - B1F SINE Alu -53 96 20 6 1354 1112 140 6 0 chr5 100828640 100828811 -51708448 - URR1B DNA MER1_type 0 225 54 6 1354 3932 175 87 114 chr5 100828815 100829833 -51707426 + RLTR25B LTR ERVK 5 995 -33 6 1354 319 183 81 40 chr5 100829825 100829899 -51707360 - URR1B DNA MER1_type -143 82 6 6 1354 27 73 0 0 chr5 100830036 100830091 -51707168 + AT_rich Low_complexity Low_complexity 1 55 0 6 1354 1423 60 38 0 chr5 100830147 100830331 -51706928 + B2_Mm1a SINE B2 2 192 -1 6 1354 383 322 65 13 chr5 100830619 100830773 -51706486 + RSINE1 SINE B4 4 165 0 6 1354 624 250 12 36 chr5 100830857 100831023 -51706236 + RSINE1 SINE B4 4 165 0 6 1354 313 222 199 14 chr5 100831410 100831556 -51705703 + MTC LTR MaLR 1 173 -248 6 1354 227 277 46 0 chr5 100831613 100831678 -51705581 + MTC LTR MaLR 288 355 -4 6 1354 756 206 20 0 chr5 100831709 100831855 -51705404 + B1_Mur2 SINE Alu 1 149 0 6 1354 471 168 124 38 chr5 100831922 100832027 -51705232 - PB1D9 SINE Alu -6 114 1 6 1354 185 268 0 0 chr5 100832178 100832219 -51705040 - L2c LINE L2 -6 3381 3341 6 1354 608 193 92 49 chr5 100832674 100832816 -51704443 - B1_Mur1 SINE Alu 0 149 2 6 1354 889 241 46 23 chr5 100833919 100834182 -51703077 - B4 SINE B4 -22 270 2 6 1354 383 227 124 36 chr5 100834189 100834326 -51702933 - B1F SINE Alu 0 149 1 6 1354 674 204 13 26 chr5 100835562 100835713 -51701546 + B1_Mur2 SINE Alu 1 149 0 6 1354 889 221 55 0 chr5 100835887 100836086 -51701173 + ID_B1 SINE B4 2 211 -13 6 1354 341 0 45 0 chr5 100836086 100836130 -51701129 + (TAAAA)n Simple_repeat Simple_repeat 1 46 0 6 1354 496 212 79 21 chr5 100837695 100837835 -51699424 + B1F SINE Alu 1 148 -1 6 1354 514 273 19 81 chr5 100837907 100838118 -51699141 + B3A SINE B2 1 198 0 6 1354 704 185 8 8 chr5 100838119 100838239 -51699020 + PB1D9 SINE Alu 1 120 0 6 1354 219 114 0 0 chr5 100838260 100838295 -51698964 + (TAA)n Simple_repeat Simple_repeat 2 36 0 6 1354 536 266 101 0 chr5 100838399 100838568 -51698691 - L1MC1 LINE L1 -139 6194 6009 6 1354 1050 61 17 3 chr5 100838927 100839080 -51698179 + B1_Mm SINE Alu 12 311 0 6 1354 369 311 120 35 chr5 100839240 100839313 -51697946 - B4 SINE B4 -4 288 202 6 1354 1332 109 5 20 chr5 100839313 100839510 -51697749 - B2_Mm2 SINE B2 0 195 2 6 1354 369 311 120 35 chr5 100839510 100839636 -51697623 - B4 SINE B4 -91 201 72 6 1354 24 0 0 0 chr5 100839733 100839757 -51697502 + AT_rich Low_complexity Low_complexity 1 24 0 6 1354 520 262 135 52 chr5 100839828 100840021 -51697238 - B3 SINE B2 -6 210 2 6 1354 411 21 0 0 chr5 100840525 100840573 -51696686 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1354 331 271 56 0 chr5 100840618 100840725 -51696534 + ID_B1 SINE B4 103 215 -9 6 1354 24 32 0 0 chr5 100840934 100840965 -51696294 + AT_rich Low_complexity Low_complexity 1 31 0 6 1354 551 243 22 0 chr5 100841039 100841175 -51696084 + ID_B1 SINE B4 81 219 -5 6 1354 356 169 0 0 chr5 100841319 100841390 -51695869 + B1_Mur2 SINE Alu 79 149 0 6 1354 234 337 105 29 chr5 100841455 100841626 -51695633 + MIRb SINE MIR 54 237 -31 6 1354 270 219 81 54 chr5 100842933 100843044 -51694215 + PB1D10 SINE Alu 2 115 -2 6 1354 225 0 0 0 chr5 100843679 100843704 -51693555 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1354 528 277 8 0 chr5 100843799 100843929 -51693330 + ID_B1 SINE B4 88 218 -6 6 1354 201 94 0 0 chr5 100844444 100844476 -51692783 + (TA)n Simple_repeat Simple_repeat 1 32 0 6 1354 642 113 0 0 chr5 100845882 100845979 -51691280 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 6 1354 273 286 138 32 chr5 100846055 100846178 -51691081 + B1F SINE Alu 14 149 0 6 1354 820 240 48 10 chr5 100846193 100846399 -51690860 + B3 SINE B2 3 216 0 6 1354 1254 20 7 0 chr5 100846763 100846909 -51690350 - B1_Mus2 SINE Alu 0 147 1 6 1354 235 228 105 0 chr5 100846967 100847024 -51690235 + PB1D10 SINE Alu 42 104 -13 6 1354 241 247 92 69 chr5 100848194 100848281 -51688978 + B1F1 SINE Alu 1 89 -60 6 1354 508 222 61 31 chr5 100849366 100849543 -51687716 + B3A SINE B2 2 193 0 7 1354 843 93 17 0 chr5 100849642 100849760 -51687499 + PB1D9 SINE Alu 1 120 0 7 1354 412 188 12 0 chr5 100849914 100849994 -51687265 - RSINE1 SINE B4 -42 123 43 7 1354 418 161 493 35 chr5 100851375 100851517 -51685742 - B3 SINE B2 -6 210 4 7 1354 407 322 56 28 chr5 100851570 100851749 -51685510 - RMER30 DNA MER1_type -1 201 18 7 1354 339 186 315 8 chr5 100851863 100851993 -51685266 + MT2A LTR ERVL 46 215 -318 7 1354 353 161 63 99 chr5 100852038 100852192 -51685067 + MT2A LTR ERVL 413 599 -2 7 1354 1995 151 70 40 chr5 100852211 100852579 -51684680 + RMER17A2 LTR ERVK 1 389 -517 7 1354 320 0 25 0 chr5 100852579 100852619 -51684640 + (TC)n Simple_repeat Simple_repeat 1 41 0 7 1354 1995 151 70 40 chr5 100852619 100852706 -51684553 + RMER17A2 LTR ERVK 390 470 -436 7 1354 865 173 54 5 chr5 100852718 100852904 -51684355 + RMER17A2 LTR ERVK 712 906 0 7 1354 385 169 72 0 chr5 100853298 100853381 -51683878 + B1_Mm SINE Alu 58 146 -1 7 1354 348 176 323 13 chr5 100853407 100853562 -51683697 + B3 SINE B2 3 205 -11 7 1354 3004 64 20 20 chr5 100853960 100854356 -51682903 + MTA_Mm LTR MaLR 1 396 0 7 1354 4338 73 30 6 chr5 100854356 100855069 -51682190 + MTA_Mm-int LTR MaLR 1 736 -522 7 1354 2445 36 45 6 chr5 100855040 100855372 -51681887 + MTA_Mm LTR MaLR 52 396 0 7 1354 511 216 136 7 chr5 100855388 100855528 -51681731 + B3 SINE B2 48 205 -11 7 1354 457 213 222 89 chr5 100856331 100856646 -51680613 + ORR1C1 LTR MaLR 1 357 -21 7 1354 331 167 116 116 chr5 100856829 100856958 -51680301 - B1_Mur4 SINE Alu -20 130 2 7 1354 500 235 105 12 chr5 100857180 100857352 -51679907 + ID_B1 SINE B4 36 223 -1 7 1354 26 0 0 0 chr5 100857760 100857786 -51679473 + AT_rich Low_complexity Low_complexity 1 26 0 7 1354 1122 99 23 0 chr5 100859732 100859903 -51677356 + B2_Mm2 SINE B2 1 175 -20 7 1354 501 190 40 10 chr5 100860119 100860220 -51677039 + B1_Mur2 SINE Alu 3 106 -43 7 1354 1896 181 55 27 chr5 100860225 100860628 -51676631 + MTC LTR MaLR 1 414 -7 7 1354 378 292 114 15 chr5 100860994 100861126 -51676133 + B4A SINE B4 63 207 -85 7 1354 351 0 0 0 chr5 100861308 100861347 -51675912 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1354 481 279 78 0 chr5 100861542 100861671 -51675588 + ID_B1 SINE B4 86 224 0 7 1354 1178 130 16 21 chr5 100861872 100862061 -51675198 + B2_Mm2 SINE B2 2 189 -6 7 1354 393 180 270 0 chr5 100862591 100862691 -51674568 - B1F2 SINE Alu -7 142 16 7 1354 1003 200 34 19 chr5 100862870 100863079 -51674180 + B3 SINE B2 1 212 -4 7 1354 1482 188 164 29 chr5 100863140 100863584 -51673675 + RLTR12B LTR ERVK 1 504 -24 7 1354 229 285 28 84 chr5 100863629 100863771 -51673488 + B4A SINE B4 41 174 -118 7 1354 321 68 0 0 chr5 100863858 100863902 -51673357 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1354 317 230 16 79 chr5 100864004 100864244 -51673015 + (CATATA)n Simple_repeat Simple_repeat 1 224 0 7 1354 340 269 241 42 chr5 100865589 100865826 -51671433 - B4A SINE B4 -8 284 1 7 1354 233 255 50 30 chr5 100865846 100865947 -51671312 + B4A SINE B4 72 174 -118 7 1354 766 204 16 16 chr5 100866203 100866387 -51670872 + B3 SINE B2 27 210 -6 7 1354 683 182 15 8 chr5 100866403 100866536 -51670723 + B1_Mm SINE Alu 1 134 -13 7 1354 375 278 55 8 chr5 100866908 100867035 -51670224 - B1_Mur3 SINE Alu -8 141 9 7 1354 242 315 22 0 chr5 100867201 100867290 -51669969 - B1F1 SINE Alu -11 138 48 7 1354 189 0 0 0 chr5 100867376 100867397 -51669862 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 7 1354 1018 96 0 0 chr5 100867397 100867532 -51669727 - B1_Mus1 SINE Alu -12 136 2 7 1354 883 199 257 25 chr5 100867598 100867913 -51669346 + MTD LTR MaLR 18 405 -14 7 1354 385 251 217 18 chr5 100868099 100868490 -51668769 - L1M5 LINE L1 -1362 4784 4309 7 1354 26 30 0 0 chr5 100868749 100868782 -51668477 + AT_rich Low_complexity Low_complexity 1 33 0 7 1354 25 31 0 0 chr5 100869055 100869087 -51668172 + AT_rich Low_complexity Low_complexity 1 32 0 7 1354 219 245 212 62 chr5 100869109 100869222 -51668037 + B1_Mur1 SINE Alu 7 136 -13 7 1354 180 0 0 0 chr5 100869223 100869243 -51668016 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 7 1354 600 215 117 31 chr5 100869361 100869524 -51667735 + B2_Mm2 SINE B2 4 180 -15 7 1354 224 292 31 92 chr5 100869902 100870000 -51667259 + ID_B1 SINE B4 73 164 -60 7 1354 336 253 104 52 chr5 100869921 100870017 -51667242 + B1F1 SINE Alu 13 113 -7 7 1354 395 226 10 0 chr5 100870237 100870339 -51666920 + GA-rich Low_complexity Low_complexity 3 105 0 7 1354 33 56 0 0 chr5 100872850 100872904 -51664355 + AT_rich Low_complexity Low_complexity 1 54 0 7 1354 396 145 53 0 chr5 100873657 100873733 -51663526 + B1_Mur4 SINE Alu 35 114 -36 7 1354 215 183 36 12 chr5 100874100 100874183 -51663076 + (TAA)n Simple_repeat Simple_repeat 1 85 0 7 1354 411 21 0 0 chr5 100874288 100874336 -51662923 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1354 369 62 0 0 chr5 100874336 100874384 -51662875 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1354 428 265 57 80 chr5 100874390 100874566 -51662693 - B4 SINE B4 0 292 121 7 1354 354 108 0 0 chr5 100874660 100874725 -51662534 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1354 1539 47 5 15 chr5 100874753 100874948 -51662311 + B2_Mm2 SINE B2 3 195 0 7 1354 1144 54 7 20 chr5 100874951 100875101 -51662158 + B1_Mus1 SINE Alu 1 148 0 7 1354 1542 77 0 0 chr5 100875202 100875397 -51661862 - B2_Mm2 SINE B2 0 195 1 7 1354 554 307 0 0 chr5 100876289 100876439 -51660820 + ID_B1 SINE B4 70 219 -5 7 1354 211 188 62 0 chr5 100876396 100876444 -51660815 + PB1D10 SINE Alu 67 117 0 7 1354 624 233 7 14 chr5 100876969 100877117 -51660142 - B1_Mur2 SINE Alu -2 147 1 7 1354 515 264 149 7 chr5 100877349 100877490 -51659769 - B3 SINE B2 -53 163 3 7 1354 485 266 35 21 chr5 100877527 100877669 -51659590 - B1_Mur1 SINE Alu 0 149 6 7 1354 266 279 67 0 chr5 100877686 100877790 -51659469 - PB1D9 SINE Alu -6 114 4 7 1354 1217 61 0 0 chr5 100877859 100878007 -51659252 + B1_Mus1 SINE Alu 1 148 0 7 1354 316 239 28 0 chr5 100878045 100878116 -51659143 - PB1D7 SINE Alu -47 73 1 7 1354 255 310 23 11 chr5 100878116 100878131 -51659128 - B4A SINE B4 -133 157 71 7 1354 422 291 64 0 chr5 100878172 100878282 -51658977 - ID_B1 SINE B4 -13 211 95 7 1354 273 244 91 68 chr5 100878441 100878529 -51658730 - B3 SINE B2 -46 170 81 7 1354 1626 166 23 13 chr5 100878614 100878920 -51658339 + ORR1B1 LTR MaLR 84 392 -2 7 1354 22 0 0 0 chr5 100880380 100880402 -51656857 + AT_rich Low_complexity Low_complexity 1 22 0 7 1354 1001 187 56 0 chr5 100880404 100880602 -51656657 - B3 SINE B2 -7 209 1 7 1354 401 212 54 81 chr5 100880776 100880925 -51656334 - B1F SINE Alu -2 147 3 7 1354 846 179 0 21 chr5 100883246 100883389 -51653870 - B1_Mus2 SINE Alu -7 140 1 7 1354 28 0 0 0 chr5 100883528 100883556 -51653703 + AT_rich Low_complexity Low_complexity 1 28 0 7 1354 456 194 26 53 chr5 100883680 100883794 -51653465 + B1_Mur1 SINE Alu 37 147 -2 7 1354 258 292 124 10 chr5 100884164 100884261 -51652998 + RSINE1 SINE B4 58 165 0 7 1354 355 384 7 0 chr5 100884262 100884413 -51652846 + (CA)n Simple_repeat Simple_repeat 2 153 0 7 1354 198 273 59 29 chr5 100884424 100884492 -51652767 + MIRc SINE MIR 21 90 -178 7 1354 1651 32 0 0 chr5 100884688 100884877 -51652382 + B2_Mm1a SINE B2 2 190 -3 7 1354 692 258 0 94 chr5 100884896 100885004 -51652255 - B3 SINE B2 -14 202 110 7 1354 1429 53 20 50 chr5 100885004 100885203 -51652056 + B2_Mm2 SINE B2 3 195 0 7 1354 692 258 0 94 chr5 100885203 100885317 -51651942 - B3 SINE B2 -107 109 1 7 1354 302 212 139 0 chr5 100885366 100885503 -51651756 + Lx9 LINE L1 7488 7643 -1 7 1354 180 0 0 0 chr5 100885680 100885700 -51651559 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 7 1354 198 0 0 0 chr5 100885862 100885884 -51651375 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 7 1354 635 220 17 0 chr5 100885886 100886004 -51651255 - B1_Mur2 SINE Alu -17 132 13 7 1354 821 180 7 7 chr5 100886036 100886176 -51651083 - B1_Mur1 SINE Alu -7 142 3 7 1354 1639 155 140 20 chr5 100887314 100887656 -51649603 + ORR1C2 LTR MaLR 1 383 -1 7 1354 278 288 30 0 chr5 100887716 100887782 -51649477 - ID4 SINE ID -3 80 13 7 1354 505 294 77 11 chr5 100887947 100888129 -51649130 - ID_B1 SINE B4 -14 210 17 7 1354 556 239 71 21 chr5 100888946 100889087 -51648172 + B3A SINE B2 2 149 -49 7 1354 462 79 0 0 chr5 100889087 100889150 -51648109 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1354 506 163 10 0 chr5 100889152 100889250 -51648009 + Lx9 LINE L1 7546 7644 0 7 1354 180 0 0 0 chr5 100889265 100889285 -51647974 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7 1354 1322 91 11 0 chr5 100889297 100889473 -51647786 + B2_Mm1t SINE B2 2 179 -14 7 1354 301 130 0 36 chr5 100889520 100889576 -51647683 + B2_Mm2 SINE B2 47 100 -95 7 1354 24 0 0 0 chr5 100889599 100889623 -51647636 + AT_rich Low_complexity Low_complexity 1 24 0 7 1354 180 0 0 0 chr5 100889623 100889643 -51647616 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1354 727 97 19 0 chr5 100890274 100890377 -51646882 + PB1D9 SINE Alu 5 109 -11 7 1354 699 12 0 0 chr5 100890384 100890464 -51646795 + (GA)n Simple_repeat Simple_repeat 2 81 0 7 1354 299 242 15 0 chr5 100890548 100890614 -51646645 + ID4 SINE ID 15 81 -2 8 1354 365 219 19 28 chr5 100890711 100890819 -51646440 + B3 SINE B2 99 205 -11 8 1354 465 144 174 10 chr5 100890831 100890929 -51646330 + PB1D9 SINE Alu 3 116 -4 8 1354 959 150 7 0 chr5 100890978 100891125 -51646134 - B1_Mur4 SINE Alu -1 149 2 8 1354 192 77 0 0 chr5 100891777 100891803 -51645456 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1354 1015 53 0 0 chr5 100891807 100891940 -51645319 - B1_Mus1 SINE Alu 0 148 16 8 1354 594 175 13 47 chr5 100891940 100891955 -51645304 - ID_B1 SINE B4 0 222 80 8 1354 605 66 11 0 chr5 100891990 100892081 -51645178 + (GGAA)n Simple_repeat Simple_repeat 3 94 0 8 1354 374 262 0 37 chr5 100893133 100893240 -51644019 - RSINE1 SINE B4 -61 104 2 8 1354 2323 60 3 9 chr5 100893309 100893629 -51643630 - ORR1A2 LTR MaLR -8 319 2 8 1354 314 239 32 32 chr5 100893864 100893957 -51643302 + B3 SINE B2 28 120 -96 8 1354 943 200 18 18 chr5 100893957 100894181 -51643078 - MTD LTR MaLR 0 419 196 8 1354 991 241 105 79 chr5 100894194 100894509 -51642750 - Lx6 LINE L1 -1 7459 7137 8 1354 527 149 222 9 chr5 100894511 100894619 -51642640 + B1_Mus2 SINE Alu 3 133 -14 8 1354 1136 75 14 0 chr5 100894663 100894809 -51642450 + B1_Mur4 SINE Alu 2 149 -1 8 1354 206 206 0 0 chr5 100894817 100894851 -51642408 + G-rich Low_complexity Low_complexity 4 37 0 8 1354 1643 225 6 48 chr5 100894851 100895202 -51642057 - Lx6 LINE L1 -311 7149 6814 8 1354 433 169 146 10 chr5 100895202 100895298 -51641961 - MTD LTR MaLR -209 210 102 8 1354 404 172 102 11 chr5 100895313 100895401 -51641858 + B1_Mus2 SINE Alu 52 147 0 8 1354 382 252 35 9 chr5 100895408 100895524 -51641735 - MTD LTR MaLR -300 119 1 8 1354 270 216 125 0 chr5 100895524 100895608 -51641651 + B3 SINE B2 116 210 -6 8 1354 236 270 40 13 chr5 100896039 100896114 -51641145 + MLT1J1 LTR MaLR 35 111 -333 8 1354 1173 82 18 0 chr5 100896269 100896439 -51640820 + B2_Mm2 SINE B2 1 173 -22 8 1354 1129 55 14 0 chr5 100896689 100896834 -51640425 + B1_Mus2 SINE Alu 1 147 0 8 1354 216 0 0 0 chr5 100896834 100896858 -51640401 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1354 457 213 65 0 chr5 100896896 100897004 -51640255 + B1_Mur2 SINE Alu 25 139 -10 8 1354 297 0 0 0 chr5 100897006 100897039 -51640220 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1354 321 226 0 0 chr5 100897074 100897158 -51640101 + GA-rich Low_complexity Low_complexity 1 84 0 8 1354 247 278 21 62 chr5 100897209 100897305 -51639954 - PB1D7 SINE Alu -1 119 28 8 1354 373 253 22 33 chr5 100897362 100897452 -51639807 - RSINE1 SINE B4 -17 148 60 8 1354 750 193 7 27 chr5 100897500 100897649 -51639610 - B1_Mur1 SINE Alu -1 148 3 8 1354 1152 293 37 66 chr5 100897947 100898173 -51639086 + L1M2 LINE L1 2187 2417 -3726 8 1354 1187 55 0 0 chr5 100898173 100898319 -51638940 + B1_Mm SINE Alu 2 147 0 8 1354 1152 293 37 66 chr5 100898319 100898793 -51638466 + L1M2 LINE L1 2418 2867 -3276 8 1354 493 154 16 106 chr5 100898807 100898930 -51638329 - PB1D10 SINE Alu 0 117 6 8 1354 679 206 74 33 chr5 100899016 100899287 -51637972 + L1M2 LINE L1 3023 3304 -2839 8 1354 415 206 97 61 chr5 100899288 100899402 -51637857 + PB1D9 SINE Alu 3 120 0 8 1354 227 233 301 0 chr5 100899406 100899479 -51637780 + B1F SINE Alu 4 98 -51 8 1354 226 191 0 0 chr5 100899447 100899489 -51637770 + B1_Mus2 SINE Alu 65 106 -41 8 1354 296 284 12 0 chr5 100899489 100899570 -51637689 + RSINE1 SINE B4 21 102 -63 8 1354 215 262 176 12 chr5 100899581 100899666 -51637593 + ID_B1 SINE B4 95 193 -31 8 1354 454 227 77 131 chr5 100899865 100900033 -51637226 + L1M2 LINE L1 3498 3679 -2464 8 1354 1253 40 0 0 chr5 100900033 100900181 -51637078 + B1_Mus1 SINE Alu 1 148 0 8 1354 454 227 77 131 chr5 100900181 100900286 -51636973 + L1M2 LINE L1 3680 3756 -2387 8 1354 242 293 52 42 chr5 100900396 100900492 -51636767 + B1F SINE Alu 33 129 -20 8 1354 574 269 107 102 chr5 100900531 100901118 -51636141 + L1M2 LINE L1 3883 4472 -1671 8 1354 233 378 0 26 chr5 100901123 100901199 -51636060 + ID4_ SINE ID 1 74 -9 8 1354 379 271 22 44 chr5 100901312 100901447 -51635812 - ID_B1 SINE B4 -91 133 2 8 1354 971 202 299 105 chr5 100901548 100901797 -51635462 - RMER2 LTR ERV1 0 567 320 8 1354 1340 101 5 5 chr5 100901797 100901987 -51635272 + B2_Mm2 SINE B2 2 191 -4 8 1354 971 202 299 105 chr5 100901987 100902212 -51635047 - RMER2 LTR ERV1 -248 319 1 8 1354 1723 21 0 0 chr5 100902506 100902699 -51634560 - B2_Mm1a SINE B2 0 193 1 8 1354 1226 34 0 20 chr5 100904222 100904372 -51632887 + B1_Mus2 SINE Alu 1 147 0 8 1354 220 65 65 0 chr5 100904373 100904419 -51632840 + (CAAAAA)n Simple_repeat Simple_repeat 3 51 0 8 1354 320 226 59 12 chr5 100904420 100904535 -51632724 + PB1D9 SINE Alu 2 119 -1 8 1354 620 224 36 5 chr5 100905434 100905601 -51631658 + B3A SINE B2 1 174 -42 8 1354 1432 50 22 22 chr5 100905661 100905846 -51631413 + B2_Mm2 SINE B2 1 185 -10 8 1354 347 217 96 0 chr5 100907359 100907474 -51629785 + RSINE1 SINE B4 4 129 -36 8 1354 386 262 10 10 chr5 100907885 100907989 -51629270 + B1F1 SINE Alu 34 137 -12 8 1354 1093 112 101 0 chr5 100908488 100908657 -51628602 - B2_Mm2 SINE B2 -9 186 1 8 1354 407 245 57 78 chr5 100908658 100908888 -51628371 + Lx7 LINE L1 7470 7694 -2 8 1354 1459 45 45 0 chr5 100908947 100909125 -51628134 - B2_Mm2 SINE B2 -8 187 2 8 1354 374 301 0 0 chr5 100909857 100909940 -51627319 - PB1D7 SINE Alu -36 84 2 8 1354 341 292 127 17 chr5 100911102 100911243 -51626016 + B3 SINE B2 16 178 -38 8 1354 198 0 0 0 chr5 100911243 100911265 -51625994 + (CA)n Simple_repeat Simple_repeat 2 23 0 8 1354 341 292 127 17 chr5 100911265 100911282 -51625977 + B3 SINE B2 179 195 -21 8 1354 477 0 0 0 chr5 100911282 100911335 -51625924 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 8 1354 264 30 0 0 chr5 100911335 100911367 -51625892 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 8 1354 341 292 127 17 chr5 100911367 100911387 -51625872 + B3 SINE B2 196 214 -2 8 1354 1253 111 16 6 chr5 100911744 100911926 -51625333 - B2_Mm2 SINE B2 -8 187 4 8 1354 1157 68 0 7 chr5 100911954 100912101 -51625158 + B1_Mus1 SINE Alu 3 148 0 8 1354 386 194 278 0 chr5 100912383 100912491 -51624768 - B1_Mur2 SINE Alu -11 138 1 8 1354 639 192 2 1 chr5 100913051 100913183 -51624076 - B1_Mus2 SINE Alu -16 133 1 8 1354 727 0 0 0 chr5 100913338 100913425 -51623834 - L1Md_T LINE L1 0 6582 6496 8 1354 1019 209 28 24 chr5 100915175 100915386 -51621873 + B3 SINE B2 5 216 0 8 1354 408 62 0 0 chr5 100915673 100915737 -51621522 - B1_Mur4 SINE Alu 0 150 87 8 1354 210 37 0 0 chr5 100916531 100916558 -51620701 + (CA)n Simple_repeat Simple_repeat 2 28 0 8 1354 345 328 143 4 chr5 100916680 100916925 -51620334 - L1M5 LINE L1 -1722 4424 4146 8 1354 1225 48 0 0 chr5 100916929 100917076 -51620183 - B1_Mm SINE Alu 0 147 1 8 1354 266 259 68 43 chr5 100917080 100917197 -51620062 - L1MC LINE L1 -1956 4190 4071 8 1354 22 0 0 0 chr5 100917495 100917517 -51619742 + AT_rich Low_complexity Low_complexity 1 22 0 8 1354 581 224 35 0 chr5 100917567 100917683 -51619576 + B3 SINE B2 97 216 0 8 1354 226 243 99 14 chr5 100917716 100917786 -51619473 + B1F SINE Alu 10 85 -64 8 1354 911 291 83 24 chr5 100917786 100918124 -51619135 + ORR1E LTR MaLR 2 359 0 8 1354 268 333 0 0 chr5 100918164 100918239 -51619020 + ID4 SINE ID 3 77 -6 8 1354 470 304 176 22 chr5 100918247 100918617 -51618642 - L1M5 LINE L1 -2210 3936 3510 8 1354 291 281 112 60 chr5 100918731 100919000 -51618259 - L1M5 LINE L1 -2641 3505 3223 8 1354 404 329 102 16 chr5 100919552 100919855 -51617404 - L1M5 LINE L1 -3232 2914 2586 8 1354 214 313 0 15 chr5 100920239 100920307 -51616952 + GA-rich Low_complexity Low_complexity 6 72 0 8 1354 1546 57 16 0 chr5 100921908 100922100 -51615159 + B2_Mm2 SINE B2 1 195 0 8 1354 325 155 11 45 chr5 100922292 100922380 -51614879 + MTEb LTR MaLR 206 290 -89 8 1354 264 232 43 0 chr5 100922390 100922459 -51614800 - Lx8 LINE L1 -359 7114 7043 8 1354 249 345 23 0 chr5 100922508 100922595 -51614664 + MTE2a LTR MaLR 222 310 -69 8 1354 359 246 0 0 chr5 100922800 100922865 -51614394 - B1_Mus2 SINE Alu -82 65 1 8 1354 28 0 0 0 chr5 100923001 100923029 -51614230 + AT_rich Low_complexity Low_complexity 1 28 0 8 1354 23 78 0 0 chr5 100923235 100923286 -51613973 + AT_rich Low_complexity Low_complexity 1 51 0 8 1354 660 209 181 16 chr5 100923290 100923533 -51613726 - Lx6 LINE L1 -18 7442 7160 8 1354 721 236 6 25 chr5 100923664 100923825 -51613434 + RSINE1 SINE B4 2 159 -6 8 1354 572 201 22 131 chr5 100924281 100924510 -51612749 + Lx9 LINE L1 7438 7641 -3 8 1354 533 229 66 37 chr5 100924520 100924656 -51612603 + B1_Mur3 SINE Alu 1 140 -9 8 1354 340 261 54 88 chr5 100925061 100925208 -51612051 + B1F SINE Alu 8 149 0 8 1354 594 230 183 18 chr5 100925255 100925419 -51611840 + B3 SINE B2 16 206 -10 8 169 244 146 0 20 chr5 100925416 100925465 -51611794 + PB1D10 SINE Alu 70 117 0 8 1355 203 139 0 44 chr5 100925558 100925603 -51611656 + A-rich Low_complexity Low_complexity 3 45 0 8 1355 288 200 0 0 chr5 100925645 100925710 -51611549 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1355 290 262 53 61 chr5 100925743 100925857 -51611402 - B3A SINE B2 -1 197 85 8 1355 225 94 0 0 chr5 100927147 100927179 -51610080 + (TAA)n Simple_repeat Simple_repeat 2 33 0 8 1355 28 0 0 0 chr5 100929297 100929325 -51607934 + GC_rich Low_complexity Low_complexity 1 28 0 8 1355 223 217 51 32 chr5 100929332 100929489 -51607770 + (CCGCG)n Simple_repeat Simple_repeat 5 164 0 8 1355 215 31 0 30 chr5 100929664 100929697 -51607562 + (CCCCG)n Simple_repeat Simple_repeat 3 34 0 8 1355 30 0 0 0 chr5 100930142 100930172 -51607087 + AT_rich Low_complexity Low_complexity 1 30 0 8 1355 638 255 29 72 chr5 100930647 100930854 -51606405 + B3A SINE B2 1 198 0 8 1355 257 292 9 94 chr5 100930892 100930998 -51606261 + B1F1 SINE Alu 1 97 -20 8 1355 274 104 20 20 chr5 100931043 100931092 -51606167 + B1_Mus2 SINE Alu 97 145 -2 8 1355 202 125 0 94 chr5 100931099 100931136 -51606123 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 1355 1147 69 28 0 chr5 100931136 100931280 -51605979 + B1_Mus1 SINE Alu 1 148 0 9 1355 202 125 0 94 chr5 100931280 100931295 -51605964 + (CAAA)n Simple_repeat Simple_repeat 3 17 0 9 1355 305 328 61 50 chr5 100932229 100932409 -51604850 - B3A SINE B2 -16 182 1 9 1355 368 293 40 83 chr5 100932430 100932528 -51604731 - L1ME2 LINE L1 -206 5958 5859 9 1355 1175 41 0 7 chr5 100932528 100932675 -51604584 - B1_Mm SINE Alu -1 146 1 9 1355 368 293 40 83 chr5 100932675 100932829 -51604430 - L1ME2 LINE L1 -306 5858 5717 9 1355 1373 94 15 25 chr5 100932883 100933079 -51604180 + B2_Mm2 SINE B2 2 195 0 9 1355 844 283 42 11 chr5 100933113 100933374 -51603885 - B4 SINE B4 0 292 24 9 1355 739 164 46 15 chr5 100933481 100933611 -51603648 - B1_Mur1 SINE Alu -12 137 4 9 1355 1531 178 127 27 chr5 100934132 100934502 -51602757 + MTC LTR MaLR 15 421 0 9 1355 3057 64 28 0 chr5 100934717 100935105 -51602154 + MTB LTR MaLR 2 400 0 9 1355 516 293 116 12 chr5 100935168 100935427 -51601832 + RMER15 LTR ERVL 275 560 -15 9 1355 351 65 0 0 chr5 100935456 100935502 -51601757 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 9 1355 198 0 0 0 chr5 100935886 100935908 -51601351 + (G)n Simple_repeat Simple_repeat 1 22 0 9 1355 341 322 115 14 chr5 100935973 100936121 -51601138 + B3A SINE B2 1 163 -35 9 1355 283 45 22 22 chr5 100936123 100936169 -51601090 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1355 1257 86 45 11 chr5 100936299 100936476 -51600783 + B2_Mm1a SINE B2 2 184 -9 9 1355 549 44 0 0 chr5 100936538 100936606 -51600653 + (GAAA)n Simple_repeat Simple_repeat 1 68 0 9 1355 435 279 90 28 chr5 100936668 100936812 -51600447 - RSINE1 SINE B4 -9 156 4 9 1355 1521 37 21 5 chr5 100936975 100937164 -51600095 + B2_Mm2 SINE B2 2 193 -2 9 1355 347 274 55 12 chr5 100937233 100937376 -51599883 + L1MC4 LINE L1 1342 1499 -4812 9 1355 590 221 93 13 chr5 100937574 100937707 -51599552 + B3 SINE B2 1 141 -75 9 1355 288 0 0 0 chr5 100937707 100937739 -51599520 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1355 590 221 93 13 chr5 100937739 100937756 -51599503 + B3 SINE B2 142 163 -53 9 1355 406 240 0 0 chr5 100937761 100937857 -51599402 - RSINE1 SINE B4 -68 97 2 9 1355 207 0 0 0 chr5 100938336 100938359 -51598900 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1355 893 177 37 47 chr5 100938657 100938847 -51598412 - B3A SINE B2 -10 188 1 9 1355 828 132 0 8 chr5 100939561 100939691 -51597568 + B3 SINE B2 2 130 -86 9 1355 519 60 0 0 chr5 100939740 100939807 -51597452 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 9 1355 1081 89 0 0 chr5 100939807 100939940 -51597319 + B1_Mus1 SINE Alu 3 135 -13 9 1355 288 0 0 0 chr5 100939940 100939972 -51597287 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9 1355 1081 89 0 0 chr5 100939972 100939984 -51597275 + B1_Mus1 SINE Alu 136 147 -1 9 1355 549 44 0 0 chr5 100939985 100940053 -51597206 + (GA)n Simple_repeat Simple_repeat 1 68 0 9 1355 421 298 75 117 chr5 100940069 100940350 -51596909 + B4A SINE B4 3 271 -21 9 1355 252 0 0 0 chr5 100940365 100940393 -51596866 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1355 457 250 0 48 chr5 100940432 100940558 -51596701 + ID_B1 SINE B4 105 224 0 9 1355 551 221 369 5 chr5 100940604 100940818 -51596441 + B4A SINE B4 1 292 0 9 1355 228 35 0 0 chr5 100940839 100940868 -51596391 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1355 405 0 0 0 chr5 100940868 100940912 -51596347 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 1355 1037 97 0 0 chr5 100941237 100941371 -51595888 + B1_Mus2 SINE Alu 2 135 -12 9 1355 221 0 0 33 chr5 100941372 100941402 -51595857 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1355 915 123 107 30 chr5 100941664 100941832 -51595427 + B2_Mm2 SINE B2 1 181 -14 9 1355 196 53 26 26 chr5 100942093 100942132 -51595127 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1355 594 325 79 68 chr5 100942787 100943140 -51594119 + Tigger7 DNA MER2_type 22 378 -2113 9 1355 250 290 14 14 chr5 100943323 100943393 -51593866 - B4A SINE B4 -88 204 135 9 1355 910 217 9 23 chr5 100943498 100943715 -51593544 - B3 SINE B2 -2 214 1 9 1355 183 100 0 0 chr5 100944000 100944030 -51593229 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 9 1355 228 242 32 16 chr5 100944136 100944199 -51593060 - B1F SINE Alu -8 141 78 9 1355 2105 110 3 0 chr5 100944218 100944536 -51592723 + ORR1A2 LTR MaLR 1 319 -8 9 1355 1387 73 17 0 chr5 100945010 100945188 -51592071 - B2_Mm2 SINE B2 -14 181 1 9 1355 250 314 149 31 chr5 100945473 100945667 -51591592 + L1MC LINE L1 5494 5710 -2172 9 1355 412 258 40 8 chr5 100946153 100946278 -51590981 - ID_B1 SINE B4 -7 217 89 9 1355 225 333 13 0 chr5 100946213 100946288 -51590971 - PB1D10 SINE Alu -41 76 1 9 1355 454 303 38 13 chr5 100946303 100946460 -51590799 - U1 snRNA snRNA -2 163 3 9 1355 2156 168 52 107 chr5 100946464 100947024 -51590235 + RLTR24 LTR ERV1 1 529 0 9 1355 350 266 105 27 chr5 100949243 100949437 -51587822 - MLT1H1 LTR MaLR -308 241 37 9 1355 815 186 55 28 chr5 100949533 100949736 -51587523 - B3A SINE B2 -1 197 10 9 1355 289 247 13 25 chr5 100949665 100949744 -51587515 - RSINE1 SINE B4 -86 79 2 9 1355 365 136 15 0 chr5 100950114 100950180 -51587079 + CT-rich Low_complexity Low_complexity 2 68 0 9 1355 1229 47 0 0 chr5 100950192 100950340 -51586919 - B1_Mus1 SINE Alu 0 148 1 9 1355 1153 195 20 0 chr5 100950545 100950745 -51586514 + B3 SINE B2 3 206 -10 9 1355 481 226 9 0 chr5 100950785 100950891 -51586368 + PB1D9 SINE Alu 14 120 0 9 1355 401 246 54 31 chr5 100951352 100951482 -51585777 - ID_B1 SINE B4 -1 223 91 9 1355 248 355 9 18 chr5 100951983 100952095 -51585164 - B1F SINE Alu -1 148 38 9 1355 516 250 167 10 chr5 100952519 100952717 -51584542 - MLT1H LTR MaLR -307 242 14 9 1355 406 254 73 0 chr5 100952825 100952935 -51584324 - PB1D7 SINE Alu 0 120 3 9 1355 495 0 0 0 chr5 100952945 100953000 -51584259 + (TC)n Simple_repeat Simple_repeat 1 55 0 9 1355 641 285 40 92 chr5 100953318 100953438 -51583821 - Lx8 LINE L1 -457 7016 6898 9 1355 477 34 0 0 chr5 100953438 100953497 -51583762 + (TTTTC)n Simple_repeat Simple_repeat 2 60 0 9 1355 1136 76 0 0 chr5 100953497 100953641 -51583618 - B1_Mus2 SINE Alu -3 144 1 9 1355 937 158 0 0 chr5 100953650 100953796 -51583463 - B1_Mus1 SINE Alu 0 148 3 9 1355 641 285 40 92 chr5 100953796 100953915 -51583344 - Lx8 LINE L1 -576 6897 6780 9 1355 349 62 0 0 chr5 100953917 100953965 -51583294 - PB1D9 SINE Alu -71 49 2 9 1355 393 241 57 49 chr5 100953969 100954091 -51583168 - Lx8 LINE L1 -988 6485 6363 9 1355 803 188 30 24 chr5 100954140 100954309 -51582950 - B3A SINE B2 -18 180 11 9 1355 464 168 98 10 chr5 100954402 100954504 -51582755 - PB1D9 SINE Alu -1 119 9 9 1355 295 51 0 0 chr5 100954868 100954907 -51582352 - B1_Mus2 SINE Alu -108 39 1 9 1355 393 256 131 60 chr5 100954936 100955119 -51582140 + B3A SINE B2 2 197 -1 9 1355 244 313 29 39 chr5 100955213 100955316 -51581943 - L2a LINE L2 -30 3396 3295 9 1355 362 272 35 92 chr5 100955820 100955874 -51581385 + MT2B LTR ERVL 115 158 -443 9 1355 798 162 7 21 chr5 100955874 100956019 -51581240 + B1_Mus2 SINE Alu 4 146 -1 9 1355 404 311 16 16 chr5 100956096 100956217 -51581042 - RSINE1 SINE B4 -42 123 3 9 1355 468 203 101 36 chr5 100956379 100956517 -51580742 + B1F SINE Alu 2 148 -1 9 1355 1152 209 55 113 chr5 100956582 100956964 -51580295 - MTE2a LTR MaLR -15 364 5 9 1355 279 256 116 0 chr5 100957797 100957918 -51579341 - Lx7 LINE L1 0 7696 7562 9 1355 573 51 0 0 chr5 100957920 100957998 -51579261 + B1_Mur4 SINE Alu 73 150 0 9 1355 618 140 8 50 chr5 100958006 100958126 -51579133 + B1_Mus2 SINE Alu 33 147 0 9 1355 491 241 187 20 chr5 100958269 100958472 -51578787 - Lx7 LINE L1 -415 7281 7045 9 1355 373 321 14 41 chr5 100958660 100958806 -51578453 - RSINE1 SINE B4 -6 159 18 9 1355 245 303 128 62 chr5 100959375 100959518 -51577741 - L2 LINE L2 -400 3019 2858 9 1355 680 187 15 7 chr5 100959518 100959653 -51577606 + B1_Mur1 SINE Alu 2 137 -12 9 1355 245 303 128 62 chr5 100959653 100959720 -51577539 - L2 LINE L2 -562 2857 2795 9 1355 200 224 0 0 chr5 100959846 100959895 -51577364 - L2 LINE L2 -851 2568 2520 9 1355 767 208 14 0 chr5 100960528 100960672 -51576587 + B1_Mur2 SINE Alu 3 148 -1 9 1355 319 149 149 0 chr5 100961684 100961751 -51575508 - B1_Mur1 SINE Alu -3 146 70 9 1355 600 230 0 8 chr5 100961751 100961878 -51575381 - B1_Mur1 SINE Alu -22 127 2 9 1355 237 253 29 87 chr5 100962963 100963067 -51574192 + RSINE1 SINE B4 62 159 -6 9 1355 24 32 0 0 chr5 100963252 100963283 -51573976 + AT_rich Low_complexity Low_complexity 1 31 0 9 1355 901 80 227 0 chr5 100963283 100963433 -51573826 - B2_Mm1t SINE B2 -9 184 1 9 1355 620 200 7 56 chr5 100963555 100963698 -51573561 - B1_Mur2 SINE Alu -5 144 9 9 1355 280 276 88 16 chr5 100963589 100963714 -51573545 - B4 SINE B4 -84 208 75 9 1355 594 305 9 57 chr5 100963779 100963991 -51573268 - RMER30 DNA MER1_type 0 202 1 9 1355 228 132 70 70 chr5 100964127 100964184 -51573075 - B1F2 SINE Alu -57 92 36 9 1355 831 189 135 16 chr5 100964436 100964629 -51572630 - B3 SINE B2 0 216 1 9 1355 1644 203 63 18 chr5 100964630 100965026 -51572233 - MTD LTR MaLR -5 414 1 9 1355 330 273 118 22 chr5 100965203 100965338 -51571921 - B1F1 SINE Alu 0 149 2 9 1355 21 71 0 0 chr5 100965338 100965380 -51571879 + AT_rich Low_complexity Low_complexity 1 42 0 9 1355 487 335 65 28 chr5 100965460 100965782 -51571477 - MER82 DNA MER2_type 0 653 320 9 1355 659 292 81 37 chr5 100965900 100966195 -51571064 - MER82 DNA MER2_type -318 335 28 9 1355 206 145 41 116 chr5 100967334 100967506 -51569753 + (CTGTG)n Simple_repeat Simple_repeat 1 159 0 1 1355 262 229 40 57 chr5 100967941 100968047 -51569212 - B3A SINE B2 -91 107 2 1 1355 252 0 0 0 chr5 100968330 100968358 -51568901 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1355 1260 100 33 0 chr5 100968570 100968750 -51568509 - B2_Mm2 SINE B2 -9 186 1 1 1355 401 250 254 35 chr5 100968862 100969090 -51568169 - L1MB7 LINE L1 -228 5956 5679 1 1355 878 135 14 21 chr5 100969251 100969533 -51567726 + CT-rich Low_complexity Low_complexity 1 279 0 1 1355 687 168 63 0 chr5 100970041 100970184 -51567075 - MTEb LTR MaLR -187 192 41 1 1355 792 142 16 0 chr5 100970277 100970404 -51566855 + B1_Mus1 SINE Alu 14 142 -6 1 1355 452 16 16 0 chr5 100971287 100971348 -51565911 - B1_Mus2 SINE Alu 0 147 86 1 1355 1408 90 0 11 chr5 100971426 100971616 -51565643 + B2_Mm2 SINE B2 1 188 -7 1 1355 569 211 0 9 chr5 100971617 100971727 -51565532 + B3 SINE B2 35 143 -73 1 1355 537 283 29 64 chr5 100971868 100972072 -51565187 - B3A SINE B2 -1 197 1 1 1355 546 227 53 13 chr5 100972072 100972217 -51565042 - B3 SINE B2 -15 201 50 1 1355 354 98 0 0 chr5 100972307 100972358 -51564901 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 1 1355 573 266 64 20 chr5 100972396 100972599 -51564660 + ID_B1 SINE B4 12 223 -1 1 1355 240 267 0 26 chr5 100973546 100973623 -51563636 - Lx9 LINE L1 -93 7551 7477 1 1355 725 186 70 21 chr5 100973639 100973826 -51563433 - Lx9 LINE L1 -128 7516 7321 1 1355 374 282 43 0 chr5 100975050 100975167 -51562092 - RSINE1 SINE B4 0 165 44 1 1355 402 221 185 0 chr5 100975396 100975498 -51561761 + B3 SINE B2 42 177 -39 1 1355 360 0 0 0 chr5 100975498 100975538 -51561721 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1355 402 209 146 0 chr5 100975538 100975570 -51561689 + B3 SINE B2 178 210 -6 1 1355 183 80 0 0 chr5 100975577 100975602 -51561657 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1355 675 114 41 97 chr5 100975621 100975766 -51561493 + B1_Mur4 SINE Alu 12 148 -2 1 1355 633 236 14 27 chr5 100976047 100976195 -51561064 - B1_Mur1 SINE Alu -2 147 2 1 1355 1332 113 129 4 chr5 100977302 100977550 -51559709 - RMER6A LTR ERVK -477 279 1 1 1355 481 269 83 42 chr5 100977581 100977798 -51559461 + L1MCa LINE L1 777 1002 -5420 1 1355 237 318 129 69 chr5 100977800 100978033 -51559226 + B4 SINE B4 1 247 -45 1 1355 929 205 47 28 chr5 100978051 100978262 -51558997 + B3 SINE B2 2 216 0 1 1355 1122 49 7 27 chr5 100978635 100978781 -51558478 + B1_Mm SINE Alu 5 147 0 1 1355 427 55 0 0 chr5 100978794 100978849 -51558410 + ORR1B1 LTR MaLR 340 394 0 1 1355 498 202 84 15 chr5 100978855 100979026 -51558233 + L1MCa LINE L1 1348 1593 -5535 1 1355 578 126 38 28 chr5 100979053 100979159 -51558100 + B1_Mur4 SINE Alu 36 142 -8 1 1355 186 43 0 0 chr5 100979166 100979189 -51558070 + (CAAT)n Simple_repeat Simple_repeat 3 25 0 1 1355 1674 153 27 7 chr5 100979189 100979485 -51557774 - ORR1A4 LTR MaLR -4 325 24 1 1355 519 221 0 0 chr5 100979714 100979827 -51557432 - B1_Mus1 SINE Alu -35 113 1 1 1355 590 214 0 46 chr5 100979845 100979856 -51557403 + ID_B1 SINE B4 80 156 -68 1 1355 1001 52 0 0 chr5 100979856 100979990 -51557269 + B1_Mus1 SINE Alu 11 144 -4 1 1355 890 97 22 33 chr5 100980045 100980227 -51557032 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1355 328 306 47 21 chr5 100983069 100983259 -51554000 - L1MD3 LINE L1 -16 7979 7785 1 1355 346 250 45 0 chr5 100983669 100983757 -51553502 + B3 SINE B2 4 95 -121 1 1355 1428 65 5 16 chr5 100983820 100984008 -51553251 + B2_Mm1t SINE B2 1 186 -7 1 1355 724 211 28 12 chr5 100984057 100984235 -51553024 + B3A SINE B2 1 168 -25 1 1355 369 0 0 0 chr5 100984367 100984408 -51552851 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1355 315 0 0 0 chr5 100984408 100984442 -51552817 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1355 1274 84 45 6 chr5 100984514 100984693 -51552566 - B2_Mm2 SINE B2 -8 187 2 1 1355 211 349 26 52 chr5 100984714 100984829 -51552430 - B1_Mur3 SINE Alu -31 118 7 1 1355 293 236 8 0 chr5 100984829 100984956 -51552303 + (CA)n Simple_repeat Simple_repeat 2 129 0 1 1355 298 270 0 0 chr5 100985011 100985085 -51552174 - B4A SINE B4 -211 81 8 1 1355 443 269 77 0 chr5 100985099 100985229 -51552030 - B1F2 SINE Alu -9 140 1 1 1355 450 0 0 0 chr5 100985747 100985797 -51551462 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1355 526 231 33 20 chr5 100985801 100985951 -51551308 - RSINE1 SINE B4 -13 152 1 1 1355 579 270 10 46 chr5 100987257 100987451 -51549808 + MLT2D LTR ERVL 1 187 -227 1 1355 312 146 470 0 chr5 100987478 100987588 -51549671 - B4 SINE B4 -127 165 4 1 1355 339 300 8 68 chr5 100987620 100987738 -51549521 - PB1D10 SINE Alu -6 111 1 1 1355 963 148 66 0 chr5 100987934 100988116 -51549143 - B2_Mm2 SINE B2 -1 194 1 1 1355 603 121 0 0 chr5 100988176 100988275 -51548984 + (TA)n Simple_repeat Simple_repeat 1 99 0 1 1355 288 0 0 0 chr5 100988286 100988318 -51548941 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1355 1387 84 0 30 chr5 100989510 100989707 -51547552 + B2_Mm2 SINE B2 1 191 -4 1 1355 210 281 35 0 chr5 100989715 100989772 -51547487 + B4A SINE B4 85 143 -149 1 1355 724 145 24 0 chr5 100989722 100989846 -51547413 + B1_Mus2 SINE Alu 9 135 -12 1 1355 234 0 0 0 chr5 100989847 100989873 -51547386 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1 1355 299 74 37 0 chr5 100989874 100989928 -51547331 + (CAGAGA)n Simple_repeat Simple_repeat 5 60 0 1 1355 615 39 0 0 chr5 100989935 100990013 -51547246 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 1 1355 388 186 186 0 chr5 100990114 100990216 -51547043 - RSINE1 SINE B4 -42 123 3 1 1355 1143 48 0 20 chr5 100990658 100990806 -51546453 - B1_Mus2 SINE Alu -1 146 2 1 1355 22 0 0 0 chr5 100990917 100990939 -51546320 + AT_rich Low_complexity Low_complexity 1 22 0 1 1355 943 151 201 27 chr5 100990948 100991132 -51546127 + B3 SINE B2 1 216 0 1 1355 651 204 87 7 chr5 100991155 100991293 -51545966 + B1_Mur4 SINE Alu 1 149 -1 1 1355 183 80 0 0 chr5 100991443 100991468 -51545791 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1355 316 280 0 119 chr5 100992383 100992517 -51544742 - PB1D7 SINE Alu -2 118 1 1 1355 423 243 42 14 chr5 100992648 100992790 -51544469 - B4A SINE B4 -131 161 16 1 1355 517 184 0 50 chr5 100992974 100993094 -51544165 + B1_Mur2 SINE Alu 2 115 -34 1 1355 297 305 30 96 chr5 100993094 100993132 -51544127 + B4 SINE B4 105 233 -59 1 1355 448 206 28 9 chr5 100993461 100993569 -51543690 + PB1D9 SINE Alu 6 115 -5 1 1355 185 132 26 0 chr5 100993569 100993607 -51543652 + G-rich Low_complexity Low_complexity 3 41 0 1 1355 807 170 58 42 chr5 100993839 100994029 -51543230 + B2_Mm2 SINE B2 3 195 0 1 1355 269 286 35 23 chr5 100994418 100994504 -51542755 + PB1 SINE Alu 41 127 0 1 1355 425 207 180 8 chr5 100994635 100994757 -51542502 + L1MC4a LINE L1 6736 6878 -1004 1 1355 1075 94 17 12 chr5 100994793 100994965 -51542294 - B2_Mm2 SINE B2 -21 174 2 1 1355 550 213 107 118 chr5 100995017 100995288 -51541971 + L1MC4a LINE L1 6931 7198 -684 1 1355 538 258 188 0 chr5 100995449 100995635 -51541624 + ID_B1 SINE B4 2 222 -2 1 1355 248 233 26 52 chr5 100995686 100995763 -51541496 + PB1D10 SINE Alu 43 117 0 1 1355 315 105 0 0 chr5 100996211 100996268 -51540991 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 1 1355 201 39 0 0 chr5 100996269 100996295 -51540964 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1355 260 300 0 48 chr5 100996307 100996391 -51540868 - Lx8 LINE L1 -187 7286 7207 1 1355 257 224 15 0 chr5 100997427 100997494 -51539765 + ID4 SINE ID 2 69 -14 1 1355 21 57 0 0 chr5 100998233 100998268 -51538991 + AT_rich Low_complexity Low_complexity 1 35 0 1 1355 201 147 0 0 chr5 100998293 100998327 -51538932 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1355 907 53 84 0 chr5 100999066 100999197 -51538062 + B1_Mus2 SINE Alu 6 147 0 1 1355 180 111 0 0 chr5 101000189 101000216 -51537043 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1355 335 23 23 0 chr5 101000771 101000815 -51536444 + (TA)n Simple_repeat Simple_repeat 1 45 0 2 1355 423 0 0 0 chr5 101000832 101000879 -51536380 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1355 584 222 48 0 chr5 101001549 101001675 -51535584 - B1_Mur3 SINE Alu -17 132 1 4 1355 264 261 25 49 chr5 101001721 101001802 -51535457 - ID4 SINE ID -64 88 10 5 1355 193 0 29 59 chr5 101001853 101001887 -51535372 + (TTATG)n Simple_repeat Simple_repeat 3 35 0 6 1355 23 0 0 0 chr5 101001893 101001916 -51535343 + AT_rich Low_complexity Low_complexity 1 23 0 7 1355 214 200 0 127 chr5 101002001 101002064 -51535195 - RSINE1 SINE B4 -25 140 86 8 1355 411 21 0 0 chr5 101002195 101002243 -51535016 + (TATG)n Simple_repeat Simple_repeat 2 49 0 9 1355 1031 186 22 95 chr5 101002314 101002546 -51534713 - B3 SINE B2 0 216 2 1 1355 1570 58 16 0 chr5 101002820 101003011 -51534248 - B2_Mm2 SINE B2 0 195 2 1 1355 822 153 261 12 chr5 101003718 101003883 -51533376 + B3 SINE B2 2 207 -9 1 1355 261 146 0 0 chr5 101003884 101003932 -51533327 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1355 1225 34 0 14 chr5 101004313 101004461 -51532798 - B1_Mm SINE Alu 0 147 2 1 1355 417 39 0 0 chr5 101004491 101004542 -51532717 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 1 1355 669 220 0 0 chr5 101004576 101004876 -51532383 + (TG)n Simple_repeat Simple_repeat 1 300 0 1 1355 266 340 10 0 chr5 101004877 101004977 -51532282 - RSINE1 SINE B4 -1 164 64 1 1355 914 83 8 0 chr5 101005240 101005372 -51531887 - B1_Mus2 SINE Alu 0 147 15 1 1355 346 196 18 110 chr5 101005274 101005383 -51531876 - MT2B LTR ERVL -337 264 166 1 1355 1263 93 16 11 chr5 101005504 101005688 -51531571 + B2_Mm1a SINE B2 2 186 -7 2 1355 1182 68 0 0 chr5 101005951 101006097 -51531162 + B1_Mus2 SINE Alu 2 147 0 2 1355 189 0 0 0 chr5 101006099 101006120 -51531139 + (A)n Simple_repeat Simple_repeat 1 21 0 2 1355 246 263 0 0 chr5 101006686 101006707 -51530552 + polypurine Low_complexity Low_complexity 1 21 0 2 1355 988 170 4 4 chr5 101006707 101006939 -51530320 + GA-rich Low_complexity Low_complexity 1 232 0 2 1355 599 142 51 124 chr5 101007007 101007144 -51530115 - B1_Mur4 SINE Alu -1 149 23 2 1355 332 238 0 45 chr5 101007068 101007156 -51530103 - MT2B LTR ERVL -344 257 174 2 1355 225 0 0 0 chr5 101007299 101007324 -51529935 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1355 1131 94 0 0 chr5 101007422 101007582 -51529677 + B2_Mm2 SINE B2 1 160 -35 2 1355 543 31 0 0 chr5 101008619 101008684 -51528575 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1355 180 0 0 0 chr5 101008719 101008739 -51528520 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 1355 346 226 35 12 chr5 101008739 101008824 -51528435 - RSINE1 SINE B4 0 165 79 3 1355 367 214 44 11 chr5 101009264 101009346 -51527913 + ID_B1 SINE B4 132 217 -7 3 1355 684 36 0 0 chr5 101009346 101009429 -51527830 + (GGA)n Simple_repeat Simple_repeat 3 85 0 3 1355 1001 74 0 0 chr5 101010057 101010192 -51527067 - B1_Mm SINE Alu 0 147 13 3 1355 755 256 17 6 chr5 101010403 101010580 -51526679 + B3 SINE B2 30 208 -8 3 1355 21 36 0 0 chr5 101010580 101010608 -51526651 + AT_rich Low_complexity Low_complexity 1 28 0 3 1355 536 211 175 100 chr5 101011443 101011643 -51525616 - B3 SINE B2 0 216 2 3 1355 296 253 23 11 chr5 101011827 101011915 -51525344 + Charlie2b DNA MER1_type 2240 2328 -454 3 1355 230 331 79 26 chr5 101012039 101012306 -51524953 - L1MC4a LINE L1 -140 7742 7462 3 1355 869 126 0 7 chr5 101012485 101012629 -51524630 + (TTC)n Simple_repeat Simple_repeat 1 143 0 3 1355 727 299 84 36 chr5 101012648 101013094 -51524165 - L1MC4a LINE L1 -939 7103 6646 3 1355 417 253 160 21 chr5 101013141 101013335 -51523924 + MTEb LTR MaLR 159 379 0 4 1355 902 101 7 0 chr5 101013552 101013690 -51523569 - B1_Mus2 SINE Alu 0 147 9 4 1355 534 98 0 0 chr5 101013941 101014023 -51523236 + (GA)n Simple_repeat Simple_repeat 1 82 0 4 1355 270 336 315 10 chr5 101014045 101014341 -51522918 + MLT1G LTR MaLR 11 397 -182 4 1355 1471 37 0 108 chr5 101014542 101014755 -51522504 + B2_Mm1a SINE B2 2 191 -2 4 1355 180 0 0 0 chr5 101014766 101014786 -51522473 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1355 467 229 69 17 chr5 101014851 101014987 -51522272 - B1_Mur1 SINE Alu 0 149 1 4 1355 290 102 34 0 chr5 101015148 101015207 -51522052 + (TCTG)n Simple_repeat Simple_repeat 4 64 0 4 1355 4332 105 4 1 chr5 101015207 101016028 -51521231 + Lx LINE L1 5219 6043 -611 4 1355 937 177 21 16 chr5 101016032 101016221 -51521038 - B3 SINE B2 -25 191 2 4 1355 6130 30 25 0 chr5 101017613 101018339 -51518920 + L1Md_F3 LINE L1 5841 6584 0 5 1355 212 167 0 0 chr5 101018361 101018403 -51518856 + T-rich Low_complexity Low_complexity 1 42 0 5 1355 1215 48 0 0 chr5 101018403 101018549 -51518710 - B1_Mus2 SINE Alu 0 147 2 5 1355 184 186 34 0 chr5 101018681 101018740 -51518519 + CT-rich Low_complexity Low_complexity 1 61 0 5 1355 398 20 20 0 chr5 101018819 101018870 -51518389 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1355 698 152 72 0 chr5 101018874 101018999 -51518260 - B1_Mur3 SINE Alu -14 135 2 5 1355 762 183 15 0 chr5 101019101 101019232 -51518027 + B1_Mus2 SINE Alu 1 133 -14 5 1355 206 111 0 62 chr5 101019275 101019323 -51517936 + G-rich Low_complexity Low_complexity 3 47 0 5 1355 269 139 0 0 chr5 101019981 101020024 -51517235 - ORR1C2 LTR MaLR -341 43 1 5 1355 810 184 179 0 chr5 101020030 101020209 -51517050 - B3 SINE B2 -5 211 1 5 1355 540 103 42 13 chr5 101020486 101020635 -51516624 + B2_Mm2 SINE B2 7 195 0 6 1355 1393 91 16 0 chr5 101021059 101021245 -51516014 - B2_Mm2 SINE B2 -6 189 1 6 1355 1424 160 82 10 chr5 101022092 101022383 -51514876 + MTC LTR MaLR 1 312 -109 6 1355 917 219 101 141 chr5 101022383 101022876 -51514383 + RMER4B LTR ERVK 1 573 -12 6 1355 641 123 12 10 chr5 101022891 101023006 -51514253 + MTC LTR MaLR 254 413 -8 6 1355 666 66 170 0 chr5 101023094 101023200 -51514059 + B1_Mus1 SINE Alu 24 147 -1 6 1355 255 93 0 0 chr5 101023266 101023309 -51513950 + (GA)n Simple_repeat Simple_repeat 1 43 0 6 1355 1215 155 235 16 chr5 101023455 101023770 -51513489 + ORR1C2 LTR MaLR 1 384 0 6 1355 932 196 50 35 chr5 101024280 101024777 -51512482 + RMER17B LTR ERVK 85 439 -519 6 1355 1169 54 7 0 chr5 101024873 101025020 -51512239 + B1_Mus1 SINE Alu 1 148 0 6 1355 342 0 0 0 chr5 101025040 101025078 -51512181 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 7 1355 250 0 100 0 chr5 101025432 101025482 -51511777 + (CCCTG)n Simple_repeat Simple_repeat 2 56 0 7 1355 825 222 135 0 chr5 101025955 101026140 -51511119 - B3 SINE B2 -5 211 2 7 1355 2466 178 86 29 chr5 101026206 101026786 -51510473 - RMER20B LTR ERVK -5 622 10 7 1355 427 267 78 20 chr5 101026877 101027030 -51510229 + RSINE1 SINE B4 4 165 0 7 1355 714 79 50 0 chr5 101027765 101027905 -51509354 + (TCTA)n Simple_repeat Simple_repeat 1 147 0 7 1355 2516 140 203 65 chr5 101027906 101028442 -51508817 - RMER19C LTR ERVK 0 611 2 7 1355 312 137 0 0 chr5 101028465 101028516 -51508743 + (TATG)n Simple_repeat Simple_repeat 2 52 0 7 1355 628 77 9 9 chr5 101028519 101028624 -51508635 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 7 1355 367 348 58 7 chr5 101028663 101028802 -51508457 - RSINE1 SINE B4 -16 149 4 7 1355 706 230 99 30 chr5 101029958 101030160 -51507099 + B3 SINE B2 1 216 0 8 1355 333 0 0 0 chr5 101030240 101030277 -51506982 + (TA)n Simple_repeat Simple_repeat 2 38 0 8 1355 585 0 0 0 chr5 101030277 101030341 -51506918 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1355 606 28 0 0 chr5 101031793 101031865 -51505394 + (TC)n Simple_repeat Simple_repeat 1 72 0 8 1355 491 217 28 0 chr5 101032154 101032260 -51504999 + PB1D9 SINE Alu 11 119 -1 8 1355 651 24 0 0 chr5 101032330 101032414 -51504845 + RLTR1B LTR ERV1 1 84 -428 8 1355 766 94 34 0 chr5 101032415 101032532 -51504727 + RLTR1B LTR ERV1 392 512 0 8 1355 412 199 110 97 chr5 101032540 101032685 -51504574 - ORR1D1 LTR MaLR -227 147 1 8 1355 723 87 0 0 chr5 101032712 101032816 -51504443 + (TTCC)n Simple_repeat Simple_repeat 3 106 0 8 1355 321 140 0 0 chr5 101033001 101033058 -51504201 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1355 25 31 0 0 chr5 101033723 101033755 -51503504 + AT_rich Low_complexity Low_complexity 1 32 0 8 1355 734 133 327 6 chr5 101033755 101033914 -51503345 - B3 SINE B2 -6 210 1 9 1355 180 0 0 0 chr5 101033929 101033949 -51503310 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 1355 1137 75 14 0 chr5 101033955 101034101 -51503158 - B1_Mus1 SINE Alu 0 148 1 9 1355 433 282 18 0 chr5 101034170 101034280 -51502979 + PB1D10 SINE Alu 3 114 -3 9 1355 460 200 8 8 chr5 101034449 101034570 -51502689 + (TA)n Simple_repeat Simple_repeat 2 122 0 9 1355 457 340 7 0 chr5 101035543 101035696 -51501563 - RSINE1 SINE B4 -10 155 2 9 1355 464 166 19 29 chr5 101035741 101035852 -51501407 - B1_Mur3 SINE Alu -1 148 5 9 1355 2299 254 86 25 chr5 101035934 101036837 -51500422 - Lx8 LINE L1 -6 7467 6631 9 1355 808 302 16 4 chr5 101037220 101037473 -51499786 - Lx8 LINE L1 -985 6488 6233 9 1355 874 181 96 40 chr5 101037473 101037882 -51499377 + RLTR20A2 LTR ERVK 1 522 -46 9 1355 366 61 0 0 chr5 101037963 101038012 -51499247 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1355 2353 213 35 74 chr5 101038243 101038367 -51498892 - Lx7 LINE L1 -385 7311 7197 1 1355 1247 34 7 0 chr5 101038367 101038513 -51498746 + B1_Mus2 SINE Alu 1 147 0 1 1355 2353 213 35 74 chr5 101038513 101039037 -51498222 - Lx7 LINE L1 -500 7196 6688 1 1355 545 158 0 6 chr5 101039052 101039150 -51498109 + MT2B LTR ERVL 1 92 -441 1 1355 21 36 0 0 chr5 101039265 101039293 -51497966 + AT_rich Low_complexity Low_complexity 1 28 0 1 1355 14072 72 38 11 chr5 101039735 101042477 -51494782 - L1VL2 LINE L1 -626 2989 176 1 1355 1266 118 191 76 chr5 101042477 101042781 -51494478 + MT2B LTR ERVL 74 412 -189 1 1355 495 0 0 0 chr5 101042793 101042848 -51494411 + (GA)n Simple_repeat Simple_repeat 1 55 0 1 1355 312 262 146 80 chr5 101042848 101043047 -51494212 + ORR1D2 LTR MaLR 24 235 -135 1 1355 355 280 70 134 chr5 101043486 101043932 -51493327 + RMER10A LTR ERVL 12 428 -14 1 1355 367 291 36 9 chr5 101044799 101044910 -51492349 - PB1D10 SINE Alu -3 114 1 1 1355 215 250 38 38 chr5 101045277 101045356 -51491903 - L2 LINE L2 -519 2900 2822 1 1355 223 286 59 12 chr5 101045412 101045497 -51491762 + MIR SINE MIR 93 181 -81 1 1355 333 333 0 9 chr5 101046001 101046110 -51491149 - PB1D10 SINE Alu -8 109 2 1 1355 219 315 176 0 chr5 101046482 101046590 -51490669 - MIRb SINE MIR -108 160 34 1 1355 3393 41 5 0 chr5 101046603 101046997 -51490262 - MTA_Mm LTR MaLR 0 396 1 1 1355 755 109 70 0 chr5 101047278 101047406 -51489853 + URR1B DNA MER1_type 89 225 0 1 1355 189 213 0 0 chr5 101047740 101047787 -51489472 + GA-rich Low_complexity Low_complexity 3 49 0 1 1355 216 0 0 0 chr5 101048015 101048039 -51489220 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 1 1355 587 278 7 7 chr5 101048202 101048347 -51488912 + B1F SINE Alu 5 149 0 1 1355 704 306 53 64 chr5 101048629 101048870 -51488389 - MTEb LTR MaLR -23 356 107 1 1355 1386 213 43 48 chr5 101048870 101049245 -51488014 + ORR1D1 LTR MaLR 1 373 -1 1 1355 704 306 53 64 chr5 101049245 101049363 -51487896 - MTEb LTR MaLR -273 106 1 1 1355 308 203 0 0 chr5 101049406 101049465 -51487794 + B3A SINE B2 17 75 -123 1 1355 501 217 9 0 chr5 101049470 101049576 -51487683 - B3 SINE B2 -100 116 10 1 1355 305 109 18 0 chr5 101049758 101049813 -51487446 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1 1355 182 0 0 97 chr5 101049877 101049908 -51487351 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 1 1355 263 259 60 149 chr5 101050563 101050731 -51486528 + MER20 DNA MER1_type 67 219 0 1 1355 180 0 0 0 chr5 101051179 101051199 -51486060 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1355 22 35 0 0 chr5 101051852 101051881 -51485378 + AT_rich Low_complexity Low_complexity 1 29 0 1 1355 482 282 44 78 chr5 101052090 101052294 -51484965 + MTEa LTR MaLR 20 216 -163 1 1355 231 61 0 0 chr5 101052306 101052339 -51484920 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1355 1048 54 0 93 chr5 101052339 101052492 -51484767 - B1_Mus1 SINE Alu -8 140 1 1 1355 652 187 14 36 chr5 101052520 101052659 -51484600 - B1_Mur2 SINE Alu 0 149 14 1 1355 687 325 57 42 chr5 101052890 101053244 -51484015 + MER21B LTR ERV1 487 845 -18 1 1355 207 280 13 26 chr5 101053267 101053344 -51483915 - MIRb SINE MIR -164 104 29 1 1355 191 314 149 29 chr5 101054255 101054429 -51482830 - MIR SINE MIR -28 234 40 1 1355 1101 223 212 102 chr5 101054529 101054874 -51482385 - MT2A LTR ERVL 0 533 119 1 1355 4265 116 3 3 chr5 101054874 101055487 -51481772 + Lx4A LINE L1 6443 7055 -3 1 1355 1101 223 212 102 chr5 101055487 101055621 -51481638 - MT2A LTR ERVL -415 118 1 1 1355 687 240 17 39 chr5 101056061 101056246 -51481013 + B3 SINE B2 4 180 -15 1 1356 229 308 0 103 chr5 101056541 101056657 -51480602 + PB1D10 SINE Alu 2 105 -12 1 1356 183 80 0 0 chr5 101056658 101056683 -51480576 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1 1356 250 188 0 0 chr5 101057475 101057523 -51479736 + L1M2 LINE L1 4980 5027 -1116 1 1356 670 229 14 28 chr5 101057741 101057885 -51479374 + B1_Mur2 SINE Alu 8 149 0 1 1356 255 272 49 0 chr5 101057890 101057971 -51479288 + L1M2 LINE L1 5126 5210 -933 1 1356 251 284 11 69 chr5 101058214 101058301 -51478958 - PB1D7 SINE Alu -38 82 1 1 1356 256 299 65 0 chr5 101058353 101058430 -51478829 - ID4_ SINE ID 0 83 2 1 1356 299 182 106 0 chr5 101058740 101058806 -51478453 + B4A SINE B4 1 73 -219 1 1356 414 0 0 0 chr5 101059003 101059049 -51478210 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1356 918 170 7 0 chr5 101059118 101059265 -51477994 + B1_Mur2 SINE Alu 2 149 0 1 1356 234 128 0 0 chr5 101059279 101059318 -51477941 + (TATG)n Simple_repeat Simple_repeat 2 40 0 1 1356 311 346 92 0 chr5 101059319 101059449 -51477810 - RSINE1 SINE B4 -22 143 2 1 1356 397 193 156 25 chr5 101059466 101059588 -51477671 - B3 SINE B2 -1 215 78 1 1356 1143 59 0 0 chr5 101060404 101060539 -51476720 + B1_Mus1 SINE Alu 1 135 -13 1 1356 250 45 0 43 chr5 101060539 101060585 -51476674 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 1356 238 279 48 9 chr5 101060639 101060744 -51476515 + L1_Mur3 LINE L1 5298 5406 -474 1 1356 285 98 0 0 chr5 101060831 101060872 -51476387 + (ATGGTG)n Simple_repeat Simple_repeat 4 44 0 1 1356 183 303 44 22 chr5 101061083 101061174 -51476085 - L2a LINE L2 -26 3400 3308 1 1356 909 147 0 0 chr5 101062173 101062329 -51474930 + (GGAA)n Simple_repeat Simple_repeat 4 159 0 1 1356 1595 211 94 34 chr5 101062366 101062779 -51474480 - RMER10A LTR ERVL -4 438 1 1 1356 419 242 97 38 chr5 101062897 101063196 -51474063 + RMER10A LTR ERVL 80 429 -13 1 1356 443 130 13 0 chr5 101063196 101063273 -51473986 + (ATTG)n Simple_repeat Simple_repeat 3 80 0 1 1356 373 88 35 0 chr5 101063274 101063331 -51473928 - L1MB3 LINE L1 -110 6073 6015 1 1356 180 0 0 0 chr5 101063458 101063478 -51473781 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 1356 889 268 54 12 chr5 101063712 101063978 -51473281 + B4A SINE B4 13 278 -14 1 1356 478 128 122 44 chr5 101063919 101064009 -51473250 + PB1D9 SINE Alu 24 120 0 1 1356 207 100 0 0 chr5 101064009 101064039 -51473220 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1 1356 459 0 0 0 chr5 101064077 101064128 -51473131 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1356 351 0 0 0 chr5 101064230 101064269 -51472990 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1356 253 208 132 0 chr5 101064768 101064821 -51472438 - B1F2 SINE Alu -89 60 1 1 1356 249 234 125 0 chr5 101064821 101064832 -51472427 - ID_B1 SINE B4 -83 141 70 1 1356 1038 140 103 15 chr5 101065159 101065362 -51471897 + MTC LTR MaLR 1 221 -200 1 1356 931 139 0 27 chr5 101065360 101065508 -51471751 + B1_Mur4 SINE Alu 6 149 -1 1 1356 1822 122 7 125 chr5 101066237 101066677 -51470582 + RMER17C LTR ERVK 23 410 0 1 1356 1107 102 48 0 chr5 101067210 101067360 -51469899 + B2_Mm2 SINE B2 1 157 -38 1 1356 189 0 0 0 chr5 101067360 101067381 -51469878 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1 1356 1107 102 48 0 chr5 101067381 101067397 -51469862 + B2_Mm2 SINE B2 158 174 -21 1 1356 405 306 63 34 chr5 101067501 101067707 -51469552 - MIRb SINE MIR -25 243 32 1 1356 834 64 0 0 chr5 101067932 101068041 -51469218 + (GAA)n Simple_repeat Simple_repeat 3 111 0 1 1356 300 111 0 0 chr5 101068041 101068086 -51469173 + (CAA)n Simple_repeat Simple_repeat 1 45 0 1 1356 696 322 101 50 chr5 101068208 101068545 -51468714 + MER57F LTR ERV1 83 436 0 1 1356 962 186 113 0 chr5 101068605 101068799 -51468460 + B3 SINE B2 1 216 0 1 1356 341 164 40 0 chr5 101069384 101069470 -51467789 - B1_Mur4 SINE Alu -2 148 53 1 1356 22 0 0 0 chr5 101069483 101069505 -51467754 + AT_rich Low_complexity Low_complexity 1 22 0 1 1356 273 309 0 0 chr5 101069622 101069690 -51467569 - MLT1A LTR MaLR -305 69 2 1 1356 373 294 62 27 chr5 101069837 101069949 -51467310 + MLT1F1 LTR MaLR 1 116 -453 1 1356 477 286 14 38 chr5 101070139 101070295 -51466964 + PB1D10 SINE Alu 1 149 0 1 1356 22 0 0 0 chr5 101070677 101070699 -51466560 + AT_rich Low_complexity Low_complexity 1 22 0 1 1356 226 349 23 0 chr5 101070775 101070861 -51466398 - B2_Mm2 SINE B2 -107 88 1 1 1356 415 339 122 17 chr5 101071035 101071323 -51465936 - MER115 DNA Tip100 -331 362 45 1 1356 444 118 0 0 chr5 101071530 101071598 -51465661 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1356 541 265 188 0 chr5 101071603 101071773 -51465486 - B4 SINE B4 -27 265 64 1 1356 279 93 0 0 chr5 101071780 101071823 -51465436 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1356 737 245 0 6 chr5 101071831 101071991 -51465268 - B3A SINE B2 -37 161 3 1 1356 325 161 0 35 chr5 101072014 101072072 -51465187 - B4 SINE B4 -217 75 20 1 1356 695 267 0 0 chr5 101073636 101073767 -51463492 + ID_B1 SINE B4 86 216 -8 1 1356 216 229 62 0 chr5 101073727 101073775 -51463484 + PB1D10 SINE Alu 67 117 0 1 1356 942 136 0 0 chr5 101073778 101073933 -51463326 + (TC)n Simple_repeat Simple_repeat 1 155 0 1 1356 650 176 121 7 chr5 101074355 101074504 -51462755 + B3 SINE B2 34 199 -17 1 1356 266 244 133 0 chr5 101074566 101074656 -51462603 + MLT2F LTR ERVL 1 102 -561 1 1356 276 305 84 8 chr5 101074738 101074857 -51462402 - ERVL-E-int LTR ERVL -4021 1646 1519 1 1356 989 124 7 0 chr5 101074987 101075132 -51462127 + B1_Mus1 SINE Alu 2 147 -1 1 1356 636 289 146 23 chr5 101075676 101075977 -51461282 - LTR41B LTR ERVL -27 731 394 1 1356 254 319 0 11 chr5 101076249 101076344 -51460915 - L1M5 LINE L1 -577 5602 5509 1 1356 482 265 48 3 chr5 101076619 101076745 -51460514 + B3A SINE B2 70 204 -12 1 1356 252 310 254 9 chr5 101076797 101076911 -51460348 - RSINE1 SINE B4 -2 163 22 2 1356 253 327 53 26 chr5 101077226 101077339 -51459920 - L2a LINE L2 -34 3392 3277 2 1356 476 298 153 72 chr5 101077504 101078047 -51459212 - L2a LINE L2 -454 2965 2379 2 1356 348 276 0 115 chr5 101078146 101078285 -51458974 + PB1 SINE Alu 3 125 -2 2 1356 319 256 26 0 chr5 101078300 101078378 -51458881 + ID4 SINE ID 2 81 -2 2 1356 1285 34 0 0 chr5 101078469 101078616 -51458643 - B1_Mus2 SINE Alu 0 147 1 2 1356 264 122 0 0 chr5 101078631 101078672 -51458587 + (CCA)n Simple_repeat Simple_repeat 3 43 0 2 1356 354 250 20 20 chr5 101079063 101079165 -51458094 - MER33 DNA MER1_type -197 127 26 2 1356 364 349 54 0 chr5 101080518 101080667 -51456592 - MLT1D LTR MaLR -22 483 327 2 1356 236 337 61 77 chr5 101080682 101080878 -51456381 - MLT1D LTR MaLR -266 239 47 2 1356 364 225 96 3 chr5 101081143 101081238 -51456021 - PB1D10 SINE Alu -40 109 7 2 1356 250 262 55 55 chr5 101081238 101081250 -51456009 - MT2B2 LTR ERVL -319 263 157 2 1356 357 307 25 42 chr5 101081291 101081410 -51455849 - MLT1B LTR MaLR -273 117 1 2 1356 807 214 31 21 chr5 101082929 101083120 -51454139 + B3 SINE B2 1 193 -23 2 1356 810 199 72 22 chr5 101083130 101083310 -51453949 + B3 SINE B2 28 216 0 2 1356 190 295 70 54 chr5 101083366 101083495 -51453764 - L2a LINE L2 -318 3108 2978 2 1356 304 235 44 0 chr5 101084239 101084307 -51452952 - PB1D10 SINE Alu -10 107 37 2 1356 225 373 30 0 chr5 101085142 101085209 -51452050 - MER20B DNA MER1_type -657 126 58 2 1356 421 234 27 27 chr5 101085350 101085460 -51451799 - PB1D10 SINE Alu -7 110 1 2 1356 240 228 0 17 chr5 101085518 101085576 -51451683 + B1_Mur2 SINE Alu 88 144 -5 2 1356 351 173 0 0 chr5 101086285 101086337 -51450922 - RSINE1 SINE B4 -89 76 25 2 1356 185 0 0 39 chr5 101086346 101086372 -51450887 + (TTA)n Simple_repeat Simple_repeat 3 27 0 2 1356 743 144 63 28 chr5 101086517 101086660 -51450599 - B1_Mur3 SINE Alu 0 149 2 2 1356 581 180 108 15 chr5 101087445 101087575 -51449684 - B1_Mur2 SINE Alu -7 142 1 2 1356 222 37 0 0 chr5 101088136 101088163 -51449096 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1356 378 281 44 0 chr5 101088178 101088292 -51448967 - B3A SINE B2 -75 123 5 2 1356 291 358 0 9 chr5 101088649 101088756 -51448503 + MIR SINE MIR 1 106 -156 2 1356 399 274 23 82 chr5 101088998 101089127 -51448132 + PB1D7 SINE Alu 17 129 -20 2 1356 213 341 96 7 chr5 101089456 101089592 -51447667 - MIR SINE MIR -78 184 37 2 1356 229 272 124 108 chr5 101089882 101090076 -51447183 + L2b LINE L2 3182 3378 -9 2 1356 357 93 0 0 chr5 101090755 101090809 -51446450 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1356 369 296 87 58 chr5 101091150 101091358 -51445901 - MIR SINE MIR -20 242 29 2 1356 552 304 105 15 chr5 101091455 101091722 -51445537 - B4A SINE B4 0 292 2 2 1356 758 160 15 8 chr5 101091811 101091943 -51445316 + B1F2 SINE Alu 16 148 -1 2 1356 246 32 0 0 chr5 101091949 101091980 -51445279 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1356 250 343 39 10 chr5 101092833 101092936 -51444323 + RSINE1 SINE B4 56 161 -4 2 1356 823 128 6 40 chr5 101092960 101093112 -51444147 + B2_Mm2 SINE B2 2 159 -57 2 1356 804 136 15 8 chr5 101094080 101094213 -51443046 - B1_Mur3 SINE Alu -13 136 3 2 1356 381 271 146 33 chr5 101094668 101094974 -51442285 - L1MDa LINE L1 -793 5840 5500 2 1356 870 242 44 6 chr5 101095218 101095401 -51441858 - B3 SINE B2 -4 212 23 2 1356 752 269 101 25 chr5 101095489 101095775 -51441484 - L1MDa LINE L1 -6308 325 18 2 1356 381 22 0 0 chr5 101096258 101096304 -51440955 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1356 247 326 61 0 chr5 101096432 101096530 -51440729 - MER44D DNA MER2_type -570 135 32 2 1356 428 158 481 11 chr5 101097242 101097423 -51439836 - MTD LTR MaLR -149 270 4 2 1356 328 145 49 73 chr5 101097594 101097702 -51439557 + B1_Mur1 SINE Alu 68 149 0 2 1356 426 250 54 48 chr5 101097747 101097894 -51439365 + B1F2 SINE Alu 1 148 -1 2 1356 990 92 0 0 chr5 101097982 101098112 -51439147 + B2_Mm2 SINE B2 1 130 -65 2 1356 243 0 0 0 chr5 101098117 101098144 -51439115 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1356 270 51 0 49 chr5 101098257 101098298 -51438961 + B2_Mm2 SINE B2 1 39 -156 2 1356 259 341 52 44 chr5 101098541 101098676 -51438583 - MT2B2 LTR ERVL -252 332 197 2 1356 405 216 20 49 chr5 101098599 101098701 -51438558 - PB1D10 SINE Alu -1 116 18 2 1356 343 302 22 2 chr5 101098744 101098849 -51438410 + PB1D10 SINE Alu 2 107 -40 2 1356 245 358 24 24 chr5 101098745 101098868 -51438391 + ID_B1 SINE B4 84 206 -18 2 1356 211 355 32 16 chr5 101098836 101098899 -51438360 + ID4_ SINE ID 15 78 -5 2 1356 231 225 48 112 chr5 101099197 101099322 -51437937 - LTR40c LTR ERVL -234 231 115 2 1356 459 277 82 44 chr5 101099908 101100156 -51437103 + ORR1D2 LTR MaLR 67 362 -8 2 1356 280 272 0 69 chr5 101100650 101100737 -51436522 + ID4 SINE ID 3 83 0 2 1356 286 358 52 7 chr5 101101113 101101248 -51436011 - MIR SINE MIR -109 153 13 2 1356 277 243 80 13 chr5 101101583 101101658 -51435601 + PB1D7 SINE Alu 41 120 0 2 1356 284 262 155 0 chr5 101101665 101101768 -51435491 + PB1D9 SINE Alu 1 119 -1 2 1356 237 376 94 0 chr5 101101994 101102079 -51435180 - B1F SINE Alu -56 93 1 2 1356 573 168 35 26 chr5 101103340 101103456 -51433803 - B3 SINE B2 -99 117 1 2 1356 288 200 0 0 chr5 101103616 101103696 -51433563 + (TA)n Simple_repeat Simple_repeat 1 80 0 2 1356 946 124 35 0 chr5 101103776 101103921 -51433338 + B1_Mur4 SINE Alu 1 150 0 2 1356 306 0 0 0 chr5 101104731 101104765 -51432494 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1356 4750 44 0 0 chr5 101104826 101105423 -51431836 - L1Md_F2 LINE L1 0 6582 6015 2 1356 282 229 0 0 chr5 101105799 101105869 -51431390 + CT-rich Low_complexity Low_complexity 4 73 0 2 1356 752 183 7 34 chr5 101105872 101106019 -51431240 - B1_Mur1 SINE Alu -6 143 1 2 1356 270 0 0 0 chr5 101106061 101106091 -51431168 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1356 369 0 0 0 chr5 101106091 101106131 -51431128 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1356 210 239 0 0 chr5 101106137 101106183 -51431076 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1356 506 242 65 0 chr5 101106304 101106428 -51430831 - RMER5 LTR ERV1 -2 532 401 2 1356 536 263 59 49 chr5 101106477 101106580 -51430679 - RMER5 LTR ERV1 -306 228 121 2 1356 3444 42 0 0 chr5 101106580 101106980 -51430279 + MTB LTR MaLR 1 400 0 2 1356 536 263 59 49 chr5 101106980 101107080 -51430179 - RMER5 LTR ERV1 -414 120 23 2 1356 429 36 0 0 chr5 101107632 101107687 -51429572 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1356 532 260 55 95 chr5 101107861 101108061 -51429198 + B3A SINE B2 7 198 0 2 1356 315 0 0 0 chr5 101108322 101108357 -51428902 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 2 1356 317 254 0 28 chr5 101108357 101108435 -51428824 - BC1_Mm scRNA scRNA -6 77 2 2 1356 310 358 168 38 chr5 101108721 101109066 -51428193 + MLT1L LTR MaLR 77 466 -144 2 1356 376 278 56 0 chr5 101110321 101110411 -51426848 - B1F SINE Alu -7 142 48 2 1356 33 0 0 0 chr5 101110442 101110475 -51426784 + AT_rich Low_complexity Low_complexity 1 33 0 2 1356 332 270 190 0 chr5 101110627 101110727 -51426532 + ID_B1 SINE B4 99 217 -7 2 1356 200 34 0 33 chr5 101110892 101110922 -51426337 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1356 1183 43 0 0 chr5 101110922 101111060 -51426199 - B1_Mm SINE Alu -9 138 1 2 1356 540 0 0 0 chr5 101111169 101111229 -51426030 + (TC)n Simple_repeat Simple_repeat 1 60 0 2 1356 520 267 0 25 chr5 101111229 101111348 -51425911 - B1F1 SINE Alu -33 116 1 2 1356 464 218 53 2 chr5 101111380 101111488 -51425771 - B1_Mur1 SINE Alu -6 143 1 2 1356 318 330 21 0 chr5 101112129 101112223 -51425036 + RSINE1 SINE B4 30 125 -40 2 1356 737 71 0 0 chr5 101112270 101112369 -51424890 + B2_Mm2 SINE B2 2 100 -95 2 1356 396 0 0 0 chr5 101112471 101112515 -51424744 + (GA)n Simple_repeat Simple_repeat 1 44 0 2 1356 3353 196 119 23 chr5 101112664 101113397 -51423862 + Lx6 LINE L1 6481 7283 -177 2 1356 198 0 0 0 chr5 101113406 101113428 -51423831 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 2 1356 184 91 22 22 chr5 101113562 101113607 -51423652 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 2 1356 35 24 0 0 chr5 101113701 101113743 -51423516 + AT_rich Low_complexity Low_complexity 1 42 0 2 1356 515 204 248 21 chr5 101114532 101114641 -51422618 + B3 SINE B2 38 153 -63 2 1356 416 91 0 15 chr5 101114641 101114708 -51422551 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1356 515 204 248 21 chr5 101114708 101114743 -51422516 + B3 SINE B2 154 213 -3 2 1356 1154 63 12 12 chr5 101114752 101114912 -51422347 + B2_Mm2 SINE B2 2 161 -34 2 1356 249 33 0 0 chr5 101114913 101114943 -51422316 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 1356 461 330 58 53 chr5 101114955 101115163 -51422096 + B4 SINE B4 84 292 0 2 1356 446 236 202 8 chr5 101115271 101115395 -51421864 + B1_Mur1 SINE Alu 2 149 0 2 1356 24 0 0 0 chr5 101115479 101115503 -51421756 + GC_rich Low_complexity Low_complexity 1 24 0 2 1356 393 264 159 23 chr5 101115740 101115758 -51421501 - B4 SINE B4 -63 229 131 2 1356 487 252 28 0 chr5 101115758 101115865 -51421394 - B1_Mus1 SINE Alu -38 110 1 2 1356 869 194 98 36 chr5 101115889 101116082 -51421177 - B3 SINE B2 -11 205 1 2 1356 306 0 0 0 chr5 101116094 101116128 -51421131 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1356 408 244 42 25 chr5 101116156 101116274 -51420985 - B4A SINE B4 -171 121 2 3 1356 3426 35 5 0 chr5 101116438 101116832 -51420427 - MTA_Mm LTR MaLR 0 396 1 3 1356 2989 68 21 2 chr5 101116832 101117397 -51419862 - MTA_Mm-int LTR MaLR 0 1098 2 3 1356 3472 28 5 0 chr5 101117397 101117791 -51419468 - MTA_Mm LTR MaLR 0 396 1 3 1356 923 215 34 19 chr5 101118198 101118407 -51418852 + B3 SINE B2 2 213 -3 3 1356 462 289 65 22 chr5 101118491 101118629 -51418630 - ID_B1 SINE B4 0 224 81 3 1356 189 0 0 0 chr5 101118701 101118722 -51418537 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1356 400 179 283 9 chr5 101118896 101119009 -51418250 - B1_Mur1 SINE Alu -5 144 1 3 1356 607 203 52 15 chr5 101119137 101119272 -51417987 - B1F SINE Alu -7 142 3 3 1356 447 19 0 0 chr5 101119338 101119390 -51417869 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1356 783 209 0 20 chr5 101119639 101119790 -51417469 + B1_Mur2 SINE Alu 2 149 0 3 1356 810 94 181 0 chr5 101119970 101120097 -51417162 - B1_Mur4 SINE Alu 0 150 1 3 1356 189 107 0 0 chr5 101120166 101120194 -51417065 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1356 899 190 106 6 chr5 101120877 101121057 -51416202 - B3 SINE B2 -16 200 3 3 1356 1613 37 5 0 chr5 101121522 101121711 -51415548 + B2_Mm1t SINE B2 1 190 -3 3 1356 21 0 0 0 chr5 101122332 101122353 -51414906 + AT_rich Low_complexity Low_complexity 1 21 0 3 1356 1029 90 14 0 chr5 101122482 101122627 -51414632 + B1_Mur4 SINE Alu 4 150 0 3 1356 721 164 102 22 chr5 101122739 101122876 -51414383 - B1_Mur1 SINE Alu -1 148 1 3 1356 731 173 118 51 chr5 101122876 101123070 -51414189 - B3 SINE B2 -7 209 2 3 1356 627 246 42 0 chr5 101123985 101124127 -51413132 + B1_Mur4 SINE Alu 3 150 0 3 1356 441 205 16 8 chr5 101124131 101124254 -51413005 + GA-rich Low_complexity Low_complexity 3 126 0 3 1356 307 0 26 0 chr5 101124255 101124293 -51412966 + (GA)n Simple_repeat Simple_repeat 2 40 0 3 1356 862 175 11 0 chr5 101124293 101124470 -51412789 + GA-rich Low_complexity Low_complexity 2 180 0 3 1356 1336 80 11 0 chr5 101124790 101124965 -51412294 + B2_Mm1t SINE B2 3 179 -14 3 1356 436 103 264 29 chr5 101124993 101125110 -51412149 + B2_Mm2 SINE B2 47 195 0 3 1356 1184 41 14 0 chr5 101125145 101125290 -51411969 - B1_Mus1 SINE Alu 0 148 2 3 1356 2176 67 0 0 chr5 101125394 101125678 -51411581 - L1_Mm LINE L1 -3873 2010 1727 3 1356 910 259 89 22 chr5 101125728 101125997 -51411262 + B4 SINE B4 2 288 -4 3 1356 370 363 0 0 chr5 101126058 101126237 -51411022 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1356 564 15 0 0 chr5 101126246 101126311 -51410948 + (GA)n Simple_repeat Simple_repeat 2 66 0 3 1356 410 204 159 0 chr5 101126512 101126600 -51410659 + B3 SINE B2 1 102 -114 3 1356 1313 105 16 5 chr5 101126709 101126900 -51410359 - B2_Mm2 SINE B2 0 195 3 3 1356 534 57 0 0 chr5 101126967 101127037 -51410222 + (GA)n Simple_repeat Simple_repeat 2 71 0 3 1356 289 281 0 30 chr5 101127211 101127277 -51409982 + RSINE1 SINE B4 84 147 -18 3 1356 504 98 11 32 chr5 101127362 101127457 -51409802 + (GAAA)n Simple_repeat Simple_repeat 2 94 0 3 1356 819 261 60 9 chr5 101127485 101127702 -51409557 + B4A SINE B4 3 230 -62 3 1356 1145 76 0 0 chr5 101127702 101127847 -51409412 + B1_Mus2 SINE Alu 1 145 -2 3 1356 298 258 0 0 chr5 101128305 101128371 -51408888 + ID SINE ID 2 67 -157 3 1356 334 293 0 12 chr5 101128372 101128455 -51408804 - ID_B1 SINE B4 -39 185 104 3 1356 756 182 146 60 chr5 101128508 101128707 -51408552 - B3 SINE B2 0 216 1 3 1356 384 118 0 0 chr5 101128833 101128901 -51408358 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1356 206 260 154 49 chr5 101129478 101129640 -51407619 + MIRb SINE MIR 69 247 -21 3 1356 250 316 95 0 chr5 101130016 101130111 -51407148 + RLTR11A2 LTR ERVK 4 107 -346 3 1356 198 128 0 0 chr5 101130112 101130151 -51407108 + (C)n Simple_repeat Simple_repeat 1 39 0 3 1356 338 242 55 0 chr5 101130152 101130243 -51407016 + RLTR11A2 LTR ERVK 119 214 -313 3 1356 412 318 13 44 chr5 101130614 101130764 -51406495 + PB1D10 SINE Alu 1 147 0 3 1356 515 43 14 0 chr5 101130767 101130837 -51406422 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 3 1356 3918 94 217 7 chr5 101131095 101131704 -51405555 + RMER19A LTR ERVK 1 737 0 3 1356 572 250 79 0 chr5 101132106 101132258 -51405001 + RSINE1 SINE B4 2 165 0 3 1356 453 148 0 0 chr5 101132258 101132339 -51404920 + (CA)n Simple_repeat Simple_repeat 1 81 0 3 1356 309 200 33 0 chr5 101132341 101132401 -51404858 + HAL1-3A_ME LINE L1 1976 2037 -821 3 1356 1243 176 19 0 chr5 101132620 101132836 -51404423 + URR1B DNA MER1_type 1 220 -5 3 1356 315 0 0 0 chr5 101132896 101132931 -51404328 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3 1356 998 218 23 41 chr5 101133364 101133584 -51403675 + B3 SINE B2 1 216 0 3 1356 850 158 50 7 chr5 101133660 101133800 -51403459 - B1_Mus2 SINE Alu -1 146 1 3 1356 1810 237 151 98 chr5 101133945 101134129 -51403130 - Tigger1 DNA MER2_type -1 2417 2233 3 1356 985 154 200 0 chr5 101134129 101134304 -51402955 + B3 SINE B2 1 210 -6 3 1356 612 180 6 219 chr5 101134311 101134489 -51402770 + B1_Mus1 SINE Alu 2 141 -7 3 1356 216 0 0 0 chr5 101134492 101134516 -51402743 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1356 1810 237 151 98 chr5 101134516 101134977 -51402282 - Tigger1 DNA MER2_type -186 2232 1742 3 1356 344 22 22 0 chr5 101134977 101135022 -51402237 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 1356 1810 237 151 98 chr5 101135022 101135157 -51402102 - Tigger1 DNA MER2_type -677 1741 1582 3 1356 504 236 157 53 chr5 101135164 101135527 -51401732 - Tigger1 DNA MER2_type -994 1424 904 3 1356 2150 258 46 16 chr5 101135551 101136133 -51401126 - Tigger1 DNA MER2_type -1593 825 226 3 1356 595 238 28 7 chr5 101136133 101136277 -51400982 + B1_Mur2 SINE Alu 2 148 -1 3 1356 1257 256 25 79 chr5 101136465 101136838 -51400421 + Lx8 LINE L1 5402 5764 -83 3 1356 896 169 0 0 chr5 101136838 101136980 -51400279 + B1_Mus1 SINE Alu 1 142 -6 3 1356 1257 266 26 73 chr5 101136980 101137111 -51400148 + Lx8 LINE L1 5765 5914 -1559 3 1356 304 229 52 15 chr5 101137262 101137382 -51399877 - B3 SINE B2 -44 172 11 3 1356 279 261 188 0 chr5 101137455 101137524 -51399735 - B4A SINE B4 -208 84 3 3 1356 334 284 8 84 chr5 101138178 101138297 -51398962 + PB1D10 SINE Alu 1 110 -7 3 1356 1318 87 16 21 chr5 101138559 101138747 -51398512 - B2_Mm2 SINE B2 -8 187 1 3 1356 187 29 0 79 chr5 101138825 101138863 -51398396 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3 1356 1006 231 14 0 chr5 101138873 101139085 -51398174 + B3 SINE B2 2 216 0 3 1356 24 0 0 0 chr5 101140517 101140541 -51396718 + AT_rich Low_complexity Low_complexity 1 24 0 3 1356 320 330 31 0 chr5 101140545 101140642 -51396617 - PB1D10 SINE Alu -5 112 13 3 1356 1213 273 88 11 chr5 101140954 101141306 -51395953 + MTEb LTR MaLR 1 379 0 3 1356 197 350 0 0 chr5 101141347 101141407 -51395852 - L2 LINE L2 -1038 2381 2322 3 1356 594 306 57 8 chr5 101141868 101142112 -51395147 + L1_Mur3 LINE L1 895 1150 -6562 3 1356 346 282 85 17 chr5 101142548 101142680 -51394579 + L2b LINE L2 3259 3386 -1 3 1356 189 0 0 0 chr5 101142897 101142918 -51394341 + (CCA)n Simple_repeat Simple_repeat 1 21 0 3 1356 210 71 0 0 chr5 101143064 101143092 -51394167 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1356 468 318 0 0 chr5 101143596 101143725 -51393534 - MER63B DNA AcHobo -34 402 274 3 1356 252 345 0 22 chr5 101144032 101144121 -51393138 - MIR SINE MIR -95 167 81 3 1356 277 290 19 48 chr5 101144497 101144532 -51392727 + ORR1D2 LTR MaLR 3 36 -334 3 1356 2523 119 50 23 chr5 101144532 101144928 -51392331 + MTB_Mm LTR MaLR 1 407 0 3 1356 622 249 146 60 chr5 101144928 101145129 -51392130 + ORR1D2 LTR MaLR 37 308 -62 3 1356 1508 63 0 5 chr5 101145129 101145319 -51391940 + B2_Mm2 SINE B2 2 190 -5 3 1356 622 243 162 62 chr5 101145319 101145381 -51391878 + ORR1D2 LTR MaLR 309 368 -2 3 1356 198 0 0 0 chr5 101145484 101145506 -51391753 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3 1356 348 161 0 0 chr5 101145582 101145644 -51391615 + T-rich Low_complexity Low_complexity 1 62 0 3 1356 405 0 0 0 chr5 101145760 101145805 -51391454 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1356 249 191 157 29 chr5 101145846 101145916 -51391343 + MER3 DNA MER1_type 50 128 -81 3 1356 235 276 26 13 chr5 101145991 101146068 -51391191 + ID4 SINE ID 3 80 -3 3 1356 362 264 92 0 chr5 101146117 101146204 -51391055 - PB1D10 SINE Alu 0 117 23 3 1356 213 316 82 21 chr5 101146735 101146832 -51390427 + MIRb SINE MIR 38 140 -128 3 1356 217 179 0 0 chr5 101146834 101146873 -51390386 - B1_Mus1 SINE Alu -100 48 10 3 1356 826 280 32 0 chr5 101146902 101147088 -51390171 - ID_B1 SINE B4 0 224 33 3 1356 212 288 40 40 chr5 101147037 101147113 -51390146 - BC1_Mm scRNA scRNA -72 80 5 3 1356 227 196 0 132 chr5 101147345 101147398 -51389861 + ID_B1 SINE B4 129 174 -50 3 1356 189 0 0 0 chr5 101147710 101147731 -51389528 + (CAGT)n Simple_repeat Simple_repeat 1 21 0 3 1356 648 316 31 0 chr5 101147770 101147966 -51389293 - ID_B1 SINE B4 -21 203 2 3 1356 217 176 27 81 chr5 101148732 101148806 -51388453 + CT-rich Low_complexity Low_complexity 4 73 0 3 1356 315 0 0 0 chr5 101149474 101149509 -51387750 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1356 345 24 0 0 chr5 101149536 101149578 -51387681 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1356 487 88 0 14 chr5 101150716 101150785 -51386474 - B1_Mus2 SINE Alu -2 145 78 3 1356 499 200 98 6 chr5 101150813 101150954 -51386305 - B1_Mur1 SINE Alu 0 149 2 3 1356 212 100 0 24 chr5 101151431 101151472 -51385787 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 3 1356 2428 124 48 18 chr5 101151605 101152000 -51385259 - MTB_Mm LTR MaLR 0 407 1 3 1356 6968 125 76 9 chr5 101152000 101153178 -51384081 - MTB_Mm-int LTR MaLR 0 1258 2 3 1356 233 146 0 47 chr5 101153178 101153221 -51384038 + MTB LTR MaLR 352 392 -8 4 1356 951 106 0 38 chr5 101153404 101153555 -51383704 - B1_Mur4 SINE Alu -1 149 5 4 1356 357 24 0 0 chr5 101153579 101153621 -51383638 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1356 351 0 0 0 chr5 101153621 101153659 -51383600 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1356 322 183 33 0 chr5 101153666 101153726 -51383533 - RSINE1 SINE B4 -21 144 83 4 1356 431 325 96 29 chr5 101153712 101153921 -51383338 - B4 SINE B4 -62 230 8 4 1356 541 242 111 82 chr5 101154009 101154067 -51383192 + B4 SINE B4 44 219 -73 4 1356 756 133 0 0 chr5 101154067 101154180 -51383079 + B1_Mur4 SINE Alu 31 143 -7 4 1356 341 354 0 99 chr5 101154220 101154361 -51382898 + B4 SINE B4 152 278 -14 4 1356 357 216 33 22 chr5 101154579 101154669 -51382590 + MLT1A1 LTR MaLR 315 405 -3 4 1356 212 278 69 0 chr5 101154900 101154972 -51382287 + RSINE1 SINE B4 1 77 -88 4 1356 474 233 88 29 chr5 101155464 101155601 -51381658 + ID_B1 SINE B4 80 224 0 4 1356 835 188 1 25 chr5 101155609 101155799 -51381460 + B3 SINE B2 1 179 -14 4 1356 2662 59 56 0 chr5 101155824 101156162 -51381097 - RLTR10D LTR ERVK 0 359 3 4 1356 1222 41 0 0 chr5 101156288 101156434 -51380825 + B1_Mus1 SINE Alu 3 148 0 4 1356 463 167 0 49 chr5 101156570 101156652 -51380607 + ID_B1 SINE B4 106 183 -41 4 1356 476 325 69 19 chr5 101156864 101157132 -51380127 - L1M4 LINE L1 -663 5781 5500 4 1356 520 156 155 8 chr5 101157389 101157518 -51379741 - B1_Mur2 SINE Alu -1 148 1 4 1356 862 272 45 15 chr5 101157792 101158061 -51379198 - ORR1D2 LTR MaLR -2 368 92 4 1356 674 222 7 0 chr5 101158148 101158283 -51378976 - B1_Mur4 SINE Alu -9 141 6 4 1356 3854 168 31 42 chr5 101158321 101159041 -51378218 - Lx5 LINE L1 -10 7040 6329 4 1356 349 293 63 46 chr5 101159071 101159246 -51378013 - L1M4 LINE L1 -946 5498 5321 4 1356 329 214 0 0 chr5 101159450 101159506 -51377753 + PB1D10 SINE Alu 51 106 -11 4 1356 241 284 54 0 chr5 101159513 101159587 -51377672 + ID4 SINE ID 3 80 -3 4 1356 1015 168 110 5 chr5 101159661 101159870 -51377389 + RMER1B Other Other 803 1033 -33 4 1356 420 111 0 0 chr5 101159870 101159933 -51377326 + (CA)n Simple_repeat Simple_repeat 1 63 0 4 1356 1387 36 0 0 chr5 101159953 101160120 -51377139 - B2_Mm1a SINE B2 -5 188 22 4 1356 750 290 51 10 chr5 101160237 101160432 -51376827 + ID_B1 SINE B4 2 204 -20 4 1356 225 0 0 0 chr5 101160433 101160458 -51376801 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1356 225 83 0 0 chr5 101160624 101160660 -51376599 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1356 334 278 0 0 chr5 101160680 101160752 -51376507 + ID4_ SINE ID 12 83 0 4 1356 652 188 271 0 chr5 101161054 101161224 -51376035 - B3 SINE B2 0 216 1 4 1356 1112 54 0 75 chr5 101161350 101161509 -51375750 - B1_Mus1 SINE Alu 0 148 2 4 1356 279 139 0 0 chr5 101161543 101161586 -51375673 - B1_Mus1 SINE Alu -104 44 2 4 1356 339 262 118 46 chr5 101161807 101161959 -51375300 - RSINE1 SINE B4 -1 164 2 4 1356 432 0 0 0 chr5 101163004 101163052 -51374207 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1356 754 223 0 138 chr5 101163448 101163672 -51373587 + B3A SINE B2 3 195 -3 4 1356 432 377 41 60 chr5 101163971 101164287 -51372972 + MLT1A0 LTR MaLR 56 365 0 4 1356 787 221 137 27 chr5 101164375 101164405 -51372854 + ORR1C2 LTR MaLR 142 171 -213 4 1356 321 47 0 0 chr5 101164405 101164448 -51372811 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1356 787 221 137 27 chr5 101164448 101164636 -51372623 + ORR1C2 LTR MaLR 172 383 -1 4 1356 534 91 0 0 chr5 101164694 101164771 -51372488 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1356 216 258 94 85 chr5 101164886 101164918 -51372341 - BC1_Mm scRNA scRNA -44 108 2 4 1356 345 216 149 0 chr5 101164918 101164992 -51372267 - B4A SINE B4 -206 86 2 4 1356 798 234 119 73 chr5 101165301 101165697 -51371562 + RMER10A LTR ERVL 29 442 0 4 1356 636 213 34 47 chr5 101165839 101165987 -51371272 - B1_Mur1 SINE Alu -2 147 2 4 1356 252 59 0 0 chr5 101166374 101166408 -51370851 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4 1356 704 176 0 0 chr5 101166557 101166665 -51370594 + B3 SINE B2 23 130 -86 4 1356 28 0 0 0 chr5 101166704 101166732 -51370527 + AT_rich Low_complexity Low_complexity 1 28 0 4 1356 959 56 0 16 chr5 101166743 101166870 -51370389 + B1_Mus2 SINE Alu 23 147 0 4 1356 357 280 40 108 chr5 101166746 101166894 -51370365 + B4 SINE B4 111 248 -44 4 1356 599 234 83 6 chr5 101167422 101167590 -51369669 - RMER5 LTR ERV1 -56 478 298 4 1356 294 344 10 10 chr5 101167894 101167991 -51369268 - MLT1A LTR MaLR -15 359 263 4 1356 264 30 0 0 chr5 101168088 101168121 -51369138 + (TC)n Simple_repeat Simple_repeat 2 34 0 4 1356 258 32 0 0 chr5 101168121 101168151 -51369108 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1356 268 184 10 0 chr5 101168151 101168206 -51369053 - ID4_ SINE ID -5 78 22 4 1356 2044 165 50 3 chr5 101168466 101168824 -51368435 - ORR1C1 LTR MaLR 0 378 4 4 1356 189 211 38 19 chr5 101168849 101168902 -51368357 - MIR SINE MIR -60 148 95 4 1356 257 295 0 6 chr5 101169040 101169207 -51368052 + (TG)n Simple_repeat Simple_repeat 1 166 0 4 1356 2896 30 3 3 chr5 101169641 101169978 -51367281 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1356 56398 23 17 7 chr5 101169978 101176385 -51360874 - IAPEz-int LTR ERVK 0 6481 8 4 1356 2908 27 3 3 chr5 101176385 101176722 -51360537 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1356 21 0 0 0 chr5 101177092 101177113 -51360146 + AT_rich Low_complexity Low_complexity 1 21 0 4 1356 948 151 0 0 chr5 101177113 101177353 -51359906 + (TG)n Simple_repeat Simple_repeat 1 240 0 4 1356 295 250 10 10 chr5 101177763 101177864 -51359395 + GA-rich Low_complexity Low_complexity 4 104 0 4 1356 198 0 0 0 chr5 101177935 101177957 -51359302 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1356 263 312 0 6 chr5 101177972 101178048 -51359211 - MLT1A LTR MaLR -295 79 5 4 1356 265 239 67 86 chr5 101178098 101178203 -51359056 - MER34 LTR ERV1 -65 477 375 4 1356 316 186 218 11 chr5 101178304 101178391 -51358868 + B3A SINE B2 2 106 -92 4 1356 1248 71 0 0 chr5 101178687 101178855 -51358404 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 4 1356 555 292 51 40 chr5 101178957 101179210 -51358049 - LTR29 LTR ERV1 -245 377 122 4 1356 324 0 0 0 chr5 101179391 101179427 -51357832 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1356 720 265 6 37 chr5 101179432 101179593 -51357666 - B3A SINE B2 -38 160 5 4 1356 379 259 78 61 chr5 101179610 101179725 -51357534 - B1_Mur1 SINE Alu 0 149 33 4 1356 186 167 0 0 chr5 101179895 101179931 -51357328 + CT-rich Low_complexity Low_complexity 1 36 0 4 1356 346 309 159 50 chr5 101181100 101181301 -51355958 + MER67B LTR ERV1 7 229 -314 4 1356 866 162 0 6 chr5 101181388 101181861 -51355398 + (CA)n Simple_repeat Simple_repeat 1 469 0 4 1356 496 218 11 0 chr5 101181905 101182079 -51355180 + (CA)n Simple_repeat Simple_repeat 2 177 0 4 1356 305 373 104 23 chr5 101182491 101182664 -51354595 + MamSINE1 SINE tRNA 16 202 -88 4 1356 414 0 0 0 chr5 101182769 101182815 -51354444 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1356 1149 231 78 21 chr5 101183066 101183412 -51353847 + ORR1D-int LTR MaLR 693 1139 -441 4 1356 230 0 0 32 chr5 101183453 101183484 -51353775 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1356 367 211 53 0 chr5 101183484 101183579 -51353680 + L1_Mur3 LINE L1 5251 5350 -530 4 1356 489 229 9 0 chr5 101183577 101183686 -51353573 + L1_Mur3 LINE L1 5501 5610 -270 4 1356 270 176 0 0 chr5 101183688 101183739 -51353520 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1356 222 37 0 0 chr5 101183739 101183766 -51353493 + (GA)n Simple_repeat Simple_repeat 2 28 0 4 1356 607 204 1 38 chr5 101184024 101184157 -51353102 - B1_Mur2 SINE Alu 0 149 21 4 1356 1637 36 0 15 chr5 101184274 101184469 -51352790 - B2_Mm1a SINE B2 -1 192 1 4 1356 1442 191 124 3 chr5 101184469 101184799 -51352460 - ORR1D1 LTR MaLR -4 370 1 4 1356 695 263 0 0 chr5 101184828 101184965 -51352294 + ID_B1 SINE B4 83 219 -5 4 1356 317 280 28 70 chr5 101184848 101184990 -51352269 - YREP_Mm Unknown Unknown -1517 295 160 4 1356 193 57 28 28 chr5 101185137 101185173 -51352086 + (GGGAGA)n Simple_repeat Simple_repeat 1 36 0 4 1356 444 198 21 52 chr5 101185211 101185307 -51351952 + B1_Mur1 SINE Alu 44 136 -13 4 1356 261 0 0 0 chr5 101185336 101185365 -51351894 + (AATTG)n Simple_repeat Simple_repeat 2 30 0 4 1356 193 296 70 0 chr5 101185418 101185489 -51351770 + MIRb SINE MIR 190 265 -3 4 1356 340 158 13 13 chr5 101185897 101185974 -51351285 + GA-rich Low_complexity Low_complexity 3 79 0 4 1356 463 252 58 44 chr5 101185983 101186120 -51351139 + RSINE1 SINE B4 3 141 -24 4 1356 779 203 164 0 chr5 101186177 101186354 -51350905 + B3 SINE B2 1 206 -10 4 1356 2467 204 162 34 chr5 101186595 101187309 -51349950 - RLTR13D1 LTR ERVK 0 806 1 4 1357 1160 62 7 0 chr5 101187680 101187826 -51349433 + B1_Mm SINE Alu 1 147 0 4 1357 243 0 0 0 chr5 101187826 101187853 -51349406 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1357 334 244 40 88 chr5 101187855 101187899 -51349360 + L1M4b LINE L1 2222 2265 -5069 4 1357 266 0 0 29 chr5 101187899 101187934 -51349325 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 4 1357 334 244 40 88 chr5 101187934 101188037 -51349222 + L1M4b LINE L1 2266 2362 -4972 4 1357 1756 183 82 39 chr5 101188253 101188715 -51348544 + RMER15 LTR ERVL 1 573 -2 4 1357 2385 137 93 33 chr5 101188770 101189230 -51348029 + RLTR28 LTR ERVL 37 524 0 4 1357 275 287 98 10 chr5 101189355 101189457 -51347802 + MIRb SINE MIR 63 173 -95 4 1357 555 191 234 11 chr5 101189715 101189890 -51347369 - B3 SINE B2 -2 214 1 5 1357 28 0 0 0 chr5 101191235 101191263 -51345996 + AT_rich Low_complexity Low_complexity 1 28 0 5 1357 563 223 42 121 chr5 101191301 101191541 -51345718 - ID_B1 SINE B4 0 224 4 5 1357 728 189 124 5 chr5 101192241 101192427 -51344832 - B3 SINE B2 -7 209 2 5 1357 331 266 0 0 chr5 101192442 101192506 -51344753 - PB1D10 SINE Alu -7 110 47 5 1357 1603 197 121 11 chr5 101192866 101193245 -51344014 - MTC LTR MaLR 0 421 1 5 1357 648 178 45 37 chr5 101193729 101193863 -51343396 - B3 SINE B2 0 216 82 5 1357 759 177 13 33 chr5 101194813 101194965 -51342294 + B1_Mur4 SINE Alu 1 149 -1 5 1357 274 331 107 40 chr5 101195046 101195373 -51341886 - RLTR15 LTR ERVK -10 349 1 5 1357 245 263 61 74 chr5 101195373 101195515 -51341744 + MT2A LTR ERVL 198 337 -196 5 1357 285 225 236 42 chr5 101196251 101196395 -51340864 + B4A SINE B4 45 216 -76 5 1357 341 135 0 0 chr5 101196687 101196739 -51340520 + PB1D9 SINE Alu 1 52 -68 5 1357 315 71 0 0 chr5 101196742 101196784 -51340475 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1357 25 0 0 0 chr5 101196814 101196839 -51340420 + AT_rich Low_complexity Low_complexity 1 25 0 5 1357 1324 232 44 0 chr5 101197926 101198350 -51338909 + RLTR18B LTR ERVK 3 485 -27 5 1357 241 153 88 78 chr5 101198699 101198783 -51338476 + PB1 SINE Alu 22 127 0 5 1357 708 160 17 8 chr5 101199223 101199343 -51337916 - B1_Mur1 SINE Alu 0 149 29 5 1357 852 248 65 22 chr5 101200249 101200525 -51336734 + B4 SINE B4 2 289 -3 5 1357 328 347 71 80 chr5 101201432 101201670 -51335589 + L1M5 LINE L1 5566 5801 -323 5 1357 289 236 96 11 chr5 101201740 101201834 -51335425 + B1F SINE Alu 41 142 -7 5 1357 750 272 47 65 chr5 101202174 101202453 -51334806 - B4A SINE B4 -3 289 3 5 1357 270 180 0 0 chr5 101202524 101202574 -51334685 + B1_Mur4 SINE Alu 100 149 -1 5 1357 369 270 30 95 chr5 101203399 101203420 -51333839 - B3 SINE B2 0 216 200 5 1357 892 126 41 14 chr5 101203420 101203565 -51333694 - B1_Mur3 SINE Alu 0 149 1 5 1357 465 264 36 39 chr5 101203565 101203711 -51333548 - B3A SINE B2 -17 199 60 5 1357 1182 202 125 18 chr5 101204415 101204742 -51332517 + ORR1D2 LTR MaLR 3 364 -6 5 1357 182 381 20 20 chr5 101204929 101205028 -51332231 - L2b LINE L2 -15 3360 3262 5 1357 241 208 377 0 chr5 101205431 101205508 -51331751 - B1F2 SINE Alu 0 120 15 5 1357 235 259 18 36 chr5 101205469 101205525 -51331734 - ID_B1 SINE B4 -90 134 80 5 1357 25 0 0 0 chr5 101205529 101205554 -51331705 + AT_rich Low_complexity Low_complexity 1 25 0 5 1357 331 225 75 43 chr5 101205557 101205650 -51331609 - PB1D9 SINE Alu -6 114 19 5 1357 760 229 7 0 chr5 101205683 101205827 -51331432 - B1_Mur3 SINE Alu 0 149 5 5 1357 377 198 15 165 chr5 101205718 101205851 -51331408 - MT2B LTR ERVL -337 264 152 5 1357 1031 90 0 7 chr5 101206876 101207011 -51330248 - B1_Mus1 SINE Alu -14 134 1 5 1357 339 260 13 0 chr5 101207056 101207133 -51330126 - Tigger5 DNA MER2_type -37 2369 2292 5 1357 745 197 211 11 chr5 101207419 101207599 -51329660 - B3 SINE B2 0 216 1 5 1357 189 255 142 62 chr5 101208518 101208631 -51328628 - MIRc SINE MIR -132 136 15 5 1357 251 329 27 0 chr5 101209276 101209349 -51327910 - ID4_ SINE ID -7 76 2 5 1357 183 239 29 43 chr5 101209565 101209635 -51327624 + MIR SINE MIR 24 92 -170 5 1357 261 0 0 0 chr5 101209638 101209667 -51327592 + (CAAG)n Simple_repeat Simple_repeat 1 29 0 5 1357 599 0 14 0 chr5 101209667 101209737 -51327522 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 5 1357 828 76 17 0 chr5 101209739 101209857 -51327402 - B1_Mur4 SINE Alu 0 150 31 5 1357 358 293 21 70 chr5 101210072 101210215 -51327044 + RSINE1 SINE B4 15 150 -15 5 1357 488 164 227 0 chr5 101210327 101210437 -51326822 + B1_Mur1 SINE Alu 2 136 -13 5 1357 1627 122 162 21 chr5 101210667 101211001 -51326258 + ORR1B1 LTR MaLR 14 394 0 5 1357 833 159 0 43 chr5 101211017 101211155 -51326104 + B1_Mus1 SINE Alu 2 133 -15 5 1357 495 33 0 0 chr5 101211155 101211216 -51326043 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1357 2860 41 3 17 chr5 101211238 101211583 -51325676 - ORR1A1 LTR MaLR -4 342 3 5 1357 771 250 83 0 chr5 101212239 101212407 -51324852 + B3 SINE B2 1 182 -34 5 1357 645 254 277 0 chr5 101212567 101212787 -51324472 - B4A SINE B4 -11 281 1 5 1357 226 236 236 75 chr5 101213231 101213405 -51323854 - B3 SINE B2 -13 203 2 5 1357 897 150 7 0 chr5 101213424 101213571 -51323688 - B1_Mur2 SINE Alu -1 148 1 5 1357 318 106 0 0 chr5 101214526 101214573 -51322686 + (T)n Simple_repeat Simple_repeat 1 47 0 5 1357 1540 58 0 5 chr5 101214767 101214959 -51322300 + B2_Mm2 SINE B2 3 193 -2 5 1357 342 0 0 0 chr5 101215013 101215051 -51322208 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 1357 272 209 90 0 chr5 101215649 101215716 -51321543 - MER119 DNA MER1_type -368 215 143 5 1357 682 211 62 36 chr5 101216265 101216457 -51320802 + B3A SINE B2 1 197 -1 5 1357 423 52 0 0 chr5 101216603 101216661 -51320598 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1357 627 269 163 4 chr5 101216702 101216948 -51320311 - B4 SINE B4 -6 286 2 5 1357 424 157 274 17 chr5 101217002 101217119 -51320140 - B1_Mur4 SINE Alu -2 148 2 5 1357 2662 106 35 5 chr5 101217189 101217586 -51319673 + RLTR9E LTR ERVK 1 409 0 5 1357 246 277 8 137 chr5 101217774 101217891 -51319368 + MT2B LTR ERVL 157 258 -343 5 1357 664 186 23 7 chr5 101217810 101217936 -51319323 + ID_B1 SINE B4 103 232 -60 5 1357 510 267 30 0 chr5 101218023 101218154 -51319105 - B1F SINE Alu -14 135 1 5 1357 21 0 0 0 chr5 101218165 101218186 -51319073 + AT_rich Low_complexity Low_complexity 1 21 0 5 1357 281 318 9 18 chr5 101218314 101218426 -51318833 - Lx9 LINE L1 -188 7456 7346 5 1357 920 194 54 15 chr5 101218429 101218633 -51318626 - B3 SINE B2 0 216 5 5 1357 417 270 20 10 chr5 101218700 101218801 -51318458 - U6 snRNA snRNA 0 107 6 5 1357 354 65 0 0 chr5 101219546 101219592 -51317667 - B1_Mus2 SINE Alu -100 47 2 5 1357 1345 62 79 0 chr5 101219609 101219787 -51317472 - B2_Mm1a SINE B2 0 193 2 5 1357 575 229 50 0 chr5 101219827 101219967 -51317292 + B1_Mur1 SINE Alu 2 148 -1 5 1357 209 333 24 24 chr5 101220067 101220150 -51317109 - MIR SINE MIR -60 202 120 5 1357 663 227 122 21 chr5 101221168 101221357 -51315902 - B3 SINE B2 -7 209 2 5 1357 363 96 0 0 chr5 101222105 101222157 -51315102 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 5 1357 526 244 101 5 chr5 101222188 101222330 -51314929 + ID_B1 SINE B4 83 237 -55 5 1357 373 192 14 19 chr5 101222427 101222519 -51314740 - B2_Mm2 SINE B2 -111 87 2 5 1357 335 318 152 0 chr5 101222844 101222976 -51314283 + RSINE1 SINE B4 8 159 -6 5 1357 263 297 54 74 chr5 101223055 101223204 -51314055 + MT2B LTR ERVL 110 255 -346 5 1357 405 224 61 0 chr5 101223118 101223216 -51314043 + PB1D9 SINE Alu 15 118 -2 5 1357 450 118 0 0 chr5 101223250 101223326 -51313933 + B2_Mm2 SINE B2 101 176 -19 5 1357 250 299 45 0 chr5 101223341 101223408 -51313851 + ID4_ SINE ID 14 83 0 5 1357 319 333 69 0 chr5 101223776 101223878 -51313381 + PB1D10 SINE Alu 1 109 -8 5 1357 686 181 8 0 chr5 101224111 101224238 -51313021 - ID_B1 SINE B4 -7 217 90 5 1357 450 230 39 47 chr5 101224298 101224426 -51312833 - B3 SINE B2 -40 176 50 5 1357 867 183 194 0 chr5 101224706 101224886 -51312373 - B3 SINE B2 -1 215 1 5 1357 481 221 164 0 chr5 101226341 101226463 -51310796 - ID_B1 SINE B4 -76 148 7 5 1357 555 168 56 48 chr5 101228081 101228206 -51309053 - Lx5 LINE L1 -452 6598 6473 5 1357 642 220 78 11 chr5 101228665 101228844 -51308415 - B3A SINE B2 -7 191 1 5 1357 295 245 71 50 chr5 101229271 101229370 -51307889 + PB1D7 SINE Alu 1 101 -19 5 1357 474 235 51 7 chr5 101229665 101229802 -51307457 + B1F1 SINE Alu 7 149 0 5 1357 1699 26 0 0 chr5 101229862 101230053 -51307206 + B2_Mm1a SINE B2 1 191 -2 5 1357 216 228 0 0 chr5 101230245 101230302 -51306957 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1357 24 32 0 0 chr5 101230646 101230677 -51306582 + AT_rich Low_complexity Low_complexity 1 31 0 5 1357 964 150 0 7 chr5 101231350 101231498 -51305761 + B1_Mus1 SINE Alu 1 147 -1 5 1357 724 139 31 0 chr5 101232170 101232299 -51304960 + B1_Mur4 SINE Alu 11 143 -7 5 1357 483 130 0 0 chr5 101232307 101232384 -51304875 + (A)n Simple_repeat Simple_repeat 1 77 0 5 1357 1362 63 74 0 chr5 101233121 101233310 -51303949 + L1Md_F2 LINE L1 6357 6559 -23 5 1357 315 304 174 27 chr5 101233817 101233999 -51303260 - B4 SINE B4 0 292 84 5 1357 320 243 50 10 chr5 101234015 101234114 -51303145 - B3A SINE B2 -21 195 97 5 1357 377 369 31 0 chr5 101234248 101234378 -51302881 - RSINE1 SINE B4 -17 148 15 5 1357 467 208 21 0 chr5 101234567 101234663 -51302596 + PB1D9 SINE Alu 13 110 -10 5 1357 459 0 0 0 chr5 101234681 101234732 -51302527 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 5 1357 357 303 152 17 chr5 101236209 101236387 -51300872 + ID_B1 SINE B4 2 203 -21 6 1357 552 203 186 6 chr5 101236837 101237020 -51300239 + B3 SINE B2 1 216 0 6 1357 663 234 98 0 chr5 101237187 101237371 -51299888 - ID_B1 SINE B4 -22 202 1 6 1357 242 262 16 0 chr5 101237383 101237444 -51299815 + LTR16B2 LTR ERVL 113 174 -288 6 1357 668 139 70 0 chr5 101237514 101237629 -51299630 + B2_Mm2 SINE B2 2 124 -71 6 1357 306 287 107 40 chr5 101237629 101237663 -51299596 + RSINE1 SINE B4 3 161 -4 6 1357 216 0 0 0 chr5 101237667 101237691 -51299568 + (GAAA)n Simple_repeat Simple_repeat 4 27 0 6 1357 369 0 0 0 chr5 101237691 101237731 -51299528 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 6 1357 722 207 21 0 chr5 101238028 101238173 -51299086 + B1_Mur1 SINE Alu 2 149 0 6 1357 907 170 22 22 chr5 101238303 101238493 -51298766 - B3 SINE B2 -2 191 2 6 1357 225 0 0 0 chr5 101238897 101238922 -51298337 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6 1357 938 181 62 48 chr5 101239069 101239278 -51297981 - B3 SINE B2 -3 213 2 6 1357 509 182 71 0 chr5 101239304 101239403 -51297856 + B1_Mus2 SINE Alu 35 140 -7 6 1357 305 283 40 10 chr5 101239610 101239710 -51297549 - RSINE1 SINE B4 -43 122 20 6 1357 186 71 0 0 chr5 101239710 101239738 -51297521 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1357 228 315 52 69 chr5 101239741 101239857 -51297402 - PB1D7 SINE Alu 0 120 7 6 1357 439 257 69 10 chr5 101240017 101240119 -51297140 - PB1D10 SINE Alu -9 108 1 6 1357 281 346 28 0 chr5 101240156 101240263 -51296996 + B1F2 SINE Alu 37 146 -3 6 1357 372 202 119 0 chr5 101240353 101240437 -51296822 + PB1D10 SINE Alu 23 116 -1 6 1357 728 148 16 0 chr5 101241356 101241478 -51295781 - B1_Mur4 SINE Alu -16 134 11 6 1357 247 281 0 0 chr5 101241740 101241797 -51295462 + ID SINE ID 2 58 -166 6 1357 210 318 125 0 chr5 101241939 101242027 -51295232 + PB1D10 SINE Alu 19 117 0 6 1357 2572 69 12 3 chr5 101242094 101242461 -51294798 + L1_Mus1 LINE L1 6224 6567 0 6 1357 1308 58 92 0 chr5 101242543 101242716 -51294543 + B2_Mm2 SINE B2 2 190 -5 6 1357 441 284 6 115 chr5 101242753 101242936 -51294323 - RSINE1 SINE B4 -1 164 2 6 1357 219 69 0 0 chr5 101243198 101243227 -51294032 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 6 1357 1160 164 34 10 chr5 101243787 101243996 -51293263 - B3 SINE B2 -2 214 1 6 1357 325 283 57 14 chr5 101245239 101245379 -51291880 + B1F1 SINE Alu 1 146 -3 6 1357 277 286 26 0 chr5 101245385 101245462 -51291797 + ID2 SINE ID 5 83 0 6 1357 217 175 0 24 chr5 101245605 101245646 -51291613 + GA-rich Low_complexity Low_complexity 5 44 0 6 1357 314 289 31 0 chr5 101245833 101245930 -51291329 + PB1D10 SINE Alu 3 102 -15 6 1357 1036 128 0 0 chr5 101245980 101246128 -51291131 + B1_Mur3 SINE Alu 2 149 0 6 1357 346 236 0 2 chr5 101247272 101247346 -51289913 - ID_B1 SINE B4 -73 151 83 6 1357 234 91 0 0 chr5 101247348 101247381 -51289878 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1357 1156 55 0 14 chr5 101247798 101247946 -51289313 - B1_Mus2 SINE Alu -1 146 1 6 1357 24 0 0 0 chr5 101248231 101248255 -51289004 + AT_rich Low_complexity Low_complexity 1 24 0 6 1357 555 281 72 3 chr5 101248636 101248828 -51288431 + B3 SINE B2 2 195 0 6 1357 234 226 71 12 chr5 101250517 101250602 -51286657 - Zaphod DNA Tip100 -177 3854 3765 6 1357 1173 28 28 0 chr5 101250731 101250876 -51286383 + B1_Mur4 SINE Alu 2 150 0 6 1357 237 65 0 0 chr5 101250876 101250907 -51286352 + (A)n Simple_repeat Simple_repeat 1 31 0 6 1357 1506 199 75 20 chr5 101251345 101251694 -51285565 - ORR1D2 LTR MaLR -2 368 1 6 1357 391 260 67 67 chr5 101252236 101252401 -51284858 + MER21-int LTR ERV1 3869 4033 -158 6 1357 324 0 0 0 chr5 101252809 101252845 -51284414 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1357 1482 72 0 20 chr5 101253064 101253263 -51283996 + B2_Mm2 SINE B2 1 195 0 6 1357 596 170 246 12 chr5 101253866 101254033 -51283226 + B3 SINE B2 1 206 -10 6 1357 1242 41 0 0 chr5 101254134 101254280 -51282979 + B1_Mm SINE Alu 2 147 0 6 1357 332 69 0 49 chr5 101254303 101254364 -51282895 + (A)n Simple_repeat Simple_repeat 1 58 0 6 1357 912 168 0 0 chr5 101254490 101254633 -51282626 + B1_Mus2 SINE Alu 5 147 0 6 1357 233 170 0 21 chr5 101254710 101254758 -51282501 - MTD LTR MaLR -98 321 275 6 1357 970 224 10 15 chr5 101255086 101255290 -51281969 - B3 SINE B2 0 216 14 6 1357 198 276 12 50 chr5 101255771 101255851 -51281408 + MIRc SINE MIR 165 241 -27 6 1357 297 0 0 0 chr5 101255989 101256022 -51281237 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1357 1264 34 0 0 chr5 101256244 101256391 -51280868 + B1_Mus1 SINE Alu 2 148 0 6 1357 530 172 0 47 chr5 101256405 101256499 -51280760 + RLTR11A2 LTR ERVK 136 224 -303 6 1357 957 9 0 0 chr5 101256499 101256609 -51280650 + (GGAGA)n Simple_repeat Simple_repeat 5 114 0 6 1357 530 172 0 47 chr5 101256609 101256642 -51280617 + RLTR11A2 LTR ERVK 225 256 -271 6 1357 639 91 0 0 chr5 101256695 101256783 -51280476 - B2_Mm2 SINE B2 -107 88 1 6 1357 257 0 30 0 chr5 101256931 101256964 -51280295 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 6 1357 1213 55 0 0 chr5 101256965 101257110 -51280149 - B1_Mm SINE Alu -2 145 1 6 1357 467 163 16 16 chr5 101257194 101257319 -51279940 + (CA)n Simple_repeat Simple_repeat 2 126 0 6 1357 360 355 27 70 chr5 101257329 101257514 -51279745 + B4 SINE B4 2 178 -114 6 1357 530 222 47 8 chr5 101257862 101257989 -51279270 - MTC LTR MaLR -8 411 280 6 1357 803 117 7 14 chr5 101257966 101258105 -51279154 - MTC LTR MaLR -283 138 1 6 1357 1520 135 22 11 chr5 101259053 101259330 -51277929 + Lx LINE L1 6374 6653 -1 6 1357 834 228 56 0 chr5 101259544 101259741 -51277518 - B3 SINE B2 0 216 9 6 1357 338 271 94 0 chr5 101259851 101259947 -51277312 + PB1D10 SINE Alu 1 105 -12 6 1357 375 23 0 0 chr5 101259952 101259996 -51277263 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1357 2244 15 0 15 chr5 101260615 101260879 -51276380 - L1Md_F2 LINE L1 -8 6574 6315 6 1357 1230 61 0 0 chr5 101260931 101261078 -51276181 + B1_Mm SINE Alu 1 147 0 6 1357 434 253 130 38 chr5 101261112 101261297 -51275962 - B3 SINE B2 -14 202 1 6 1357 423 0 0 0 chr5 101261410 101261457 -51275802 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1357 436 167 67 0 chr5 101261535 101261625 -51275634 - B1F SINE Alu -19 130 35 6 1357 638 227 193 30 chr5 101261840 101262101 -51275158 + RLTR28B LTR ERVL 3 314 -167 6 1357 342 0 0 0 chr5 101262101 101262139 -51275120 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 6 1357 638 227 193 30 chr5 101262139 101262177 -51275082 + RLTR28B LTR ERVL 315 350 -131 6 1357 539 297 60 16 chr5 101262220 101262405 -51274854 - B4A SINE B4 -86 206 14 6 1357 425 269 92 95 chr5 101262917 101262973 -51274286 + Ricksha_c DNA MuDR 347 404 -1644 6 1357 1948 146 85 0 chr5 101262973 101263315 -51273944 + ORR1D1 LTR MaLR 2 372 -2 6 1357 425 269 92 95 chr5 101263315 101263627 -51273632 + Ricksha_c DNA MuDR 405 714 -1334 6 1357 25 31 0 0 chr5 101263631 101263663 -51273596 + AT_rich Low_complexity Low_complexity 1 32 0 6 1357 866 231 58 73 chr5 101263671 101263892 -51273367 + Lx5 LINE L1 6737 6960 -90 6 1357 1144 37 0 0 chr5 101263892 101264027 -51273232 + B1_Mus2 SINE Alu 1 135 -12 6 1357 826 99 8 8 chr5 101264027 101264159 -51273100 + (GAAA)n Simple_repeat Simple_repeat 1 132 0 6 1357 866 231 58 73 chr5 101264159 101264211 -51273048 + Lx5 LINE L1 6961 7006 -44 6 1357 26 0 0 0 chr5 101264213 101264239 -51273020 + AT_rich Low_complexity Low_complexity 1 26 0 6 1357 326 188 297 68 chr5 101264239 101264387 -51272872 - B3A SINE B2 -16 182 1 6 1357 31 0 0 0 chr5 101264671 101264702 -51272557 + AT_rich Low_complexity Low_complexity 1 31 0 6 1357 1110 68 7 7 chr5 101264851 101264998 -51272261 - B1_Mm SINE Alu 0 147 1 6 1357 348 234 35 35 chr5 101265001 101265116 -51272143 - B1_Mur2 SINE Alu -2 147 33 6 1357 906 276 74 63 chr5 101265243 101265606 -51271653 - MTEa LTR MaLR -12 367 1 6 1357 613 169 120 23 chr5 101265846 101265967 -51271292 + B1_Mus2 SINE Alu 2 138 -9 6 1357 252 0 0 0 chr5 101265967 101265995 -51271264 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1357 613 169 120 23 chr5 101265995 101266006 -51271253 + B1_Mus2 SINE Alu 139 147 0 6 1357 1157 68 7 0 chr5 101266030 101266176 -51271083 + B1_Mus2 SINE Alu 1 147 0 6 1357 240 59 0 0 chr5 101266179 101266213 -51271046 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1357 1037 113 12 12 chr5 101266228 101266398 -51270861 + B2_Mm2 SINE B2 3 172 -23 6 1357 956 32 0 0 chr5 101266409 101266532 -51270727 + B1_Mus2 SINE Alu 25 147 0 6 1357 1411 84 10 10 chr5 101266575 101266768 -51270491 + B2_Mm1t SINE B2 1 193 0 6 1357 667 247 23 6 chr5 101266784 101266955 -51270304 + ID_B1 SINE B4 1 174 -50 6 1357 536 244 15 30 chr5 101266941 101267076 -51270183 - MTE2b LTR MaLR -246 133 1 6 1357 1801 231 42 57 chr5 101267076 101267303 -51269956 - MTE2b-int LTR MaLR 0 1580 1356 6 1357 1366 69 15 36 chr5 101267303 101267499 -51269760 + B2_Mm2 SINE B2 2 193 -2 6 1357 1801 231 42 57 chr5 101267499 101267767 -51269492 - MTE2b-int LTR MaLR -225 1355 1092 6 1357 1052 203 65 0 chr5 101267778 101267995 -51269264 + Lx9 LINE L1 6701 6931 -713 6 1357 494 208 61 117 chr5 101268004 101268200 -51269059 + Lx8 LINE L1 7001 7185 -288 6 1357 872 44 2 8 chr5 101268267 101268391 -51268868 + B1_Mus2 SINE Alu 33 149 0 6 1357 1442 73 21 0 chr5 101268464 101268655 -51268604 + B2_Mm2 SINE B2 1 195 0 6 1357 702 198 6 11 chr5 101268748 101268927 -51268332 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 1357 282 226 11 87 chr5 101269049 101269141 -51268118 - MLT-int LTR MaLR -1401 334 250 7 1357 509 55 41 0 chr5 101269214 101269287 -51267972 - B1_Mus1 SINE Alu -54 94 19 7 1357 1976 199 153 30 chr5 101269422 101269546 -51267713 - RMER1C Other Other -8 1334 1186 7 1357 636 14 0 0 chr5 101269546 101269619 -51267640 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1357 1976 199 153 30 chr5 101269619 101270002 -51267257 - RMER1C Other Other -157 1185 764 7 1357 410 300 34 50 chr5 101270002 101270181 -51267078 + ERVL-B4-int LTR ERVL 1355 1530 -4184 7 1357 937 300 122 45 chr5 101270292 101270735 -51266524 + ERVL-B4-int LTR ERVL 1720 2196 -3518 7 1357 1071 119 15 20 chr5 101271024 101271221 -51266038 - RMER6C LTR ERVK -11 679 484 7 1357 2025 130 34 17 chr5 101271269 101271622 -51265637 - RMER6C LTR ERVK -331 359 1 7 1357 183 113 18 36 chr5 101271647 101271683 -51265576 + A-rich Low_complexity Low_complexity 2 37 0 7 1357 2754 72 8 8 chr5 101271683 101272048 -51265211 - RLTR10B2 LTR ERVK 0 365 1 7 1357 183 113 18 36 chr5 101272048 101272066 -51265193 + A-rich Low_complexity Low_complexity 38 55 0 7 1357 680 207 27 14 chr5 101272072 101272219 -51265040 + B1_Mur2 SINE Alu 1 149 0 7 1357 222 37 0 0 chr5 101272258 101272285 -51264974 + (GA)n Simple_repeat Simple_repeat 1 27 0 7 1357 236 235 20 0 chr5 101272319 101272370 -51264889 + ID4 SINE ID 6 57 -26 7 1357 234 0 0 0 chr5 101272387 101272413 -51264846 + (CCAA)n Simple_repeat Simple_repeat 1 26 0 7 1357 216 182 45 0 chr5 101272490 101272534 -51264725 + CT-rich Low_complexity Low_complexity 4 49 0 7 1357 231 36 0 0 chr5 101272642 101272670 -51264589 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1357 204 83 0 53 chr5 101272682 101272694 -51264565 + (A)n Simple_repeat Simple_repeat 1 12 0 7 1357 1079 77 7 7 chr5 101272694 101272837 -51264422 + B1_Mus1 SINE Alu 4 146 -2 7 1357 204 83 0 53 chr5 101272837 101272862 -51264397 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1357 317 306 26 18 chr5 101273724 101273837 -51263422 - PB1D10 SINE Alu -1 116 3 7 1357 247 248 72 80 chr5 101274720 101274849 -51262410 - B1F SINE Alu -17 132 4 7 1357 21 36 0 0 chr5 101275160 101275188 -51262071 + GC_rich Low_complexity Low_complexity 1 28 0 7 1357 231 36 0 0 chr5 101276229 101276257 -51261002 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1357 234 0 0 0 chr5 101276451 101276477 -51260782 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1357 779 54 0 18 chr5 101276485 101276598 -51260661 - B1_Mus2 SINE Alu 0 147 37 7 1357 309 164 0 173 chr5 101276598 101276610 -51260649 - ID_B1 SINE B4 0 187 115 7 1357 264 222 104 61 chr5 101277046 101277161 -51260098 - PB1D7 SINE Alu 0 120 1 7 1357 217 240 106 47 chr5 101277528 101277627 -51259632 - B1F1 SINE Alu -6 114 11 7 1357 1326 88 22 16 chr5 101278215 101278400 -51258859 - B2_Mm2 SINE B2 -9 186 1 7 1357 482 200 0 106 chr5 101278494 101278617 -51258642 + PB1D7 SINE Alu 6 115 -5 7 1357 867 176 132 11 chr5 101278669 101278858 -51258401 + B3 SINE B2 1 212 -4 7 1357 1525 62 0 20 chr5 101278879 101279077 -51258182 + B2_Mm2 SINE B2 2 195 0 7 1357 213 65 0 0 chr5 101279096 101279127 -51258132 + (TAG)n Simple_repeat Simple_repeat 2 32 0 7 1357 329 316 102 0 chr5 101279476 101279574 -51257685 + PB1D7 SINE Alu 2 109 -11 7 1357 1416 65 22 0 chr5 101279574 101279759 -51257500 + B2_Mm1t SINE B2 2 190 -3 7 1357 402 231 14 160 chr5 101279772 101279932 -51257327 + RSINE1 SINE B4 6 138 -27 7 1357 1087 67 0 0 chr5 101280093 101280228 -51257031 + B1_Mus1 SINE Alu 2 136 -12 7 1357 351 0 0 0 chr5 101280229 101280268 -51256991 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1357 1245 47 0 0 chr5 101280354 101280502 -51256757 - B1_Mus1 SINE Alu 0 148 1 7 1357 269 347 0 0 chr5 101280861 101280933 -51256326 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1357 403 248 157 0 chr5 101282055 101282176 -51255083 + ID_B1 SINE B4 2 141 -83 7 1357 453 97 0 0 chr5 101282177 101282249 -51255010 + (CA)n Simple_repeat Simple_repeat 1 72 0 7 1357 200 231 0 19 chr5 101282914 101282967 -51254292 + CT-rich Low_complexity Low_complexity 2 53 0 7 1357 238 273 0 15 chr5 101282980 101283047 -51254212 - ID4 SINE ID -16 67 2 7 1357 359 218 43 134 chr5 101283056 101283220 -51254039 - B1F1 SINE Alu 0 149 1 7 1357 356 307 0 34 chr5 101283665 101283783 -51253476 - MLT1B LTR MaLR -17 373 260 7 1357 433 308 16 87 chr5 101283969 101284154 -51253105 - B4A SINE B4 -120 172 1 7 1357 1241 34 0 0 chr5 101284570 101284716 -51252543 + B1_Mm SINE Alu 2 147 0 7 1357 212 77 26 0 chr5 101284716 101284755 -51252504 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 7 1357 372 206 18 81 chr5 101284915 101284935 -51252324 - BC1_Mm scRNA scRNA -47 105 88 7 1357 1177 75 0 0 chr5 101284935 101285082 -51252177 - B1_Mus1 SINE Alu 0 148 2 7 1357 443 176 3 23 chr5 101285082 101285172 -51252087 - ID4_ SINE ID -65 87 2 7 1357 227 103 0 25 chr5 101285250 101285290 -51251969 + (TTA)n Simple_repeat Simple_repeat 1 39 0 7 1357 856 169 14 0 chr5 101285306 101285454 -51251805 - B1_Mur4 SINE Alu 0 150 1 7 1357 186 87 21 42 chr5 101285518 101285566 -51251693 + (GTTTG)n Simple_repeat Simple_repeat 3 49 0 7 1357 232 25 75 0 chr5 101286293 101286333 -51250926 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 7 1357 1219 22 0 0 chr5 101286335 101286473 -51250786 + B1_Mus2 SINE Alu 1 138 -9 7 1357 243 79 0 0 chr5 101286473 101286511 -51250748 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 7 1357 248 125 78 0 chr5 101286827 101286891 -51250368 + (TTTG)n Simple_repeat Simple_repeat 2 70 0 7 1357 291 54 0 0 chr5 101287093 101287130 -51250129 + (CCAA)n Simple_repeat Simple_repeat 2 38 0 7 1357 441 180 90 38 chr5 101287378 101287511 -51249748 + B1F SINE Alu 3 142 -7 7 1357 195 42 0 0 chr5 101287524 101287548 -51249711 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 7 1357 522 43 0 0 chr5 101287567 101287636 -51249623 + (GAGAA)n Simple_repeat Simple_repeat 5 73 0 7 1357 216 0 0 0 chr5 101288202 101288226 -51249033 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 7 1357 2499 127 193 79 chr5 101288400 101289018 -51248241 - RMER6C LTR ERVK -2 688 1 7 1357 311 235 118 0 chr5 101289269 101289371 -51247888 + ID_B1 SINE B4 1 114 -110 7 1357 583 200 64 0 chr5 101290659 101290784 -51246475 - B1_Mus2 SINE Alu -13 134 2 7 1357 300 27 0 0 chr5 101292045 101292082 -51245177 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 1357 432 230 11 0 chr5 101292111 101292198 -51245061 + ID_B1 SINE B4 4 91 -133 7 1357 207 301 60 34 chr5 101293054 101293171 -51244088 - MIRm SINE MIR -115 161 42 7 1357 1651 191 76 15 chr5 101293497 101293906 -51243353 - RLTR16 LTR ERVK -71 434 1 7 1357 1248 89 78 0 chr5 101294100 101294261 -51242998 + B2_Mm1t SINE B2 1 175 -18 7 1357 333 0 0 0 chr5 101294261 101294298 -51242961 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 7 1357 1248 89 78 0 chr5 101294298 101294315 -51242944 + B2_Mm1t SINE B2 176 192 -1 7 1357 369 196 19 38 chr5 101294315 101294421 -51242838 - ORR1D2 LTR MaLR -55 315 212 7 1357 432 272 0 0 chr5 101294464 101294556 -51242703 - ORR1D2 LTR MaLR -277 93 2 7 1357 458 332 132 30 chr5 101294574 101294975 -51242284 + MER21B LTR ERV1 248 689 -174 7 1357 697 184 16 8 chr5 101294973 101295099 -51242160 + B1_Mus1 SINE Alu 19 145 -3 7 1357 346 179 86 37 chr5 101295118 101295199 -51242060 + B1_Mur4 SINE Alu 66 150 0 7 1357 1590 53 0 0 chr5 101295667 101295855 -51241404 + B2_Mm1a SINE B2 2 189 -4 7 1357 189 0 0 0 chr5 101296010 101296031 -51241228 + (T)n Simple_repeat Simple_repeat 1 21 0 7 1357 290 94 15 45 chr5 101296097 101296164 -51241095 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1357 249 222 19 0 chr5 101296602 101296656 -51240603 + tRNA-Ala-GCA tRNA tRNA 1 55 -20 7 1357 1400 40 22 17 chr5 101297164 101297343 -51239916 + B2_Mm2 SINE B2 1 180 -15 7 1357 644 164 119 0 chr5 101297353 101297487 -51239772 + B3 SINE B2 2 151 -65 7 1357 413 198 0 10 chr5 101297800 101297897 -51239362 + GA-rich Low_complexity Low_complexity 2 97 0 7 1357 180 0 0 0 chr5 101298593 101298613 -51238646 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1357 423 299 57 98 chr5 101298995 101299039 -51238220 + B3A SINE B2 2 42 -156 7 1357 1433 74 5 5 chr5 101299039 101299230 -51238029 - B2_Mm1a SINE B2 0 193 3 7 1357 423 299 57 98 chr5 101299230 101299378 -51237881 + B3A SINE B2 43 186 -12 7 1357 737 272 29 5 chr5 101299389 101299603 -51237656 - B3A SINE B2 0 216 2 7 1357 1120 74 0 0 chr5 101299620 101299768 -51237491 - B1_Mus1 SINE Alu 0 148 1 7 1357 221 163 80 20 chr5 101300818 101300868 -51236391 - ID4_ SINE ID -19 64 12 7 1357 322 153 122 4 chr5 101300996 101301088 -51236171 + B1_Mur2 SINE Alu 10 120 0 7 1357 351 0 0 0 chr5 101301388 101301427 -51235832 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1357 1203 22 0 0 chr5 101301427 101301564 -51235695 - B1_Mm SINE Alu -10 137 1 7 1357 1375 52 46 0 chr5 101301702 101301875 -51235384 - B2_Mm2 SINE B2 -14 181 1 7 1357 388 259 20 0 chr5 101301885 101302016 -51235243 - B1_Mur1 SINE Alu 0 149 15 7 1357 221 328 0 0 chr5 101302508 101302566 -51234693 + C-rich Low_complexity Low_complexity 4 61 0 7 1357 317 295 115 0 chr5 101302566 101302705 -51234554 - HAL1-3A_ME LINE L1 -420 2438 2284 7 1357 750 53 0 0 chr5 101303147 101303242 -51234017 + (CATCC)n Simple_repeat Simple_repeat 3 97 0 7 1357 385 291 31 0 chr5 101303293 101303420 -51233839 - L1M5 LINE L1 -346 5816 5686 7 1357 539 197 64 28 chr5 101303775 101303916 -51233343 + B3A SINE B2 2 147 -51 7 1357 341 248 71 65 chr5 101303941 101304096 -51233163 + ID_B1 SINE B4 65 220 -4 7 1357 991 167 8 156 chr5 101304887 101305049 -51232210 - URR1B DNA MER1_type -1 224 104 7 1357 1357 76 11 11 chr5 101305049 101305235 -51232024 + B2_Mm2 SINE B2 2 187 -8 8 1357 991 167 8 156 chr5 101305235 101305335 -51231924 - URR1B DNA MER1_type -122 103 2 7 1357 472 287 92 0 chr5 101305627 101305791 -51231468 - B3 SINE B2 -3 213 35 8 1357 277 316 0 0 chr5 101305801 101305880 -51231379 - ID_B1 SINE B4 -131 93 15 8 1357 947 224 25 10 chr5 101306486 101306689 -51230570 - B3 SINE B2 -5 211 6 8 1357 183 175 0 0 chr5 101306701 101306731 -51230528 + CT-rich Low_complexity Low_complexity 11 40 0 8 1357 1130 105 0 6 chr5 101306731 101306904 -51230355 + (TTTCC)n Simple_repeat Simple_repeat 4 175 0 8 1357 987 59 82 0 chr5 101306913 101307048 -51230211 - B1_Mus1 SINE Alu -1 147 2 8 1357 1561 58 5 0 chr5 101307068 101307259 -51230000 - B2_Mm1t SINE B2 0 193 2 8 1357 1236 54 12 0 chr5 101307279 101307445 -51229814 - L1Md_F2 LINE L1 0 6582 6415 8 1357 330 87 0 0 chr5 101307449 101307495 -51229764 + (T)n Simple_repeat Simple_repeat 1 46 0 8 1357 1219 48 0 0 chr5 101307495 101307642 -51229617 - B1_Mus2 SINE Alu 0 147 1 8 1357 1527 53 11 0 chr5 101307645 101307835 -51229424 - B2_Mm1t SINE B2 -1 192 1 8 1357 549 0 0 0 chr5 101308249 101308310 -51228949 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 8 1357 318 107 0 0 chr5 101309687 101309743 -51227516 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1357 1616 26 0 5 chr5 101310524 101310720 -51226539 - L1Md_F3 LINE L1 -14 6570 6376 8 1357 334 24 0 0 chr5 101310720 101310761 -51226498 - U6 snRNA snRNA -66 41 1 8 1357 729 203 53 0 chr5 101311152 101311285 -51225974 - B1_Mur1 SINE Alu -9 140 1 8 1357 304 200 67 45 chr5 101311288 101311351 -51225908 + polypyrimidine Low_complexity Low_complexity 31 95 0 8 1357 1326 78 0 0 chr5 101311351 101311531 -51225728 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 8 1357 304 200 67 45 chr5 101311531 101311556 -51225703 + polypyrimidine Low_complexity Low_complexity 5 30 0 8 1357 317 200 191 8 chr5 101311556 101311682 -51225577 - B2_Mm2 SINE B2 0 195 47 8 1357 1282 102 11 0 chr5 101311736 101311913 -51225346 - B2_Mm1t SINE B2 -14 179 1 8 1357 248 296 0 0 chr5 101311943 101311997 -51225262 - ID4_ SINE ID -10 73 20 8 1357 606 28 0 0 chr5 101312673 101312745 -51224514 + (GA)n Simple_repeat Simple_repeat 1 72 0 8 1357 333 0 0 0 chr5 101312746 101312783 -51224476 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1357 663 197 0 0 chr5 101312988 101313105 -51224154 - ID_B1 SINE B4 -1 223 107 8 1357 485 291 0 29 chr5 101314332 101314470 -51222789 - B1F1 SINE Alu -14 135 2 8 1357 287 260 18 63 chr5 101314608 101314719 -51222540 + PB1D10 SINE Alu 10 115 -2 8 1357 1226 133 11 0 chr5 101315104 101315292 -51221967 - B2_Mm1t SINE B2 -1 192 3 8 1357 1720 135 11 43 chr5 101316114 101316502 -51220757 - ORR1A2 LTR MaLR 0 346 3 8 1357 367 247 0 12 chr5 101316582 101316664 -51220595 + ID4_ SINE ID 3 83 0 8 1357 510 254 90 0 chr5 101316694 101316733 -51220526 + B1F1 SINE Alu 1 39 -110 8 1357 285 29 0 0 chr5 101316733 101316767 -51220492 + (GA)n Simple_repeat Simple_repeat 2 35 0 8 1357 510 254 90 0 chr5 101316767 101316849 -51220410 + B1F1 SINE Alu 40 131 -18 8 1357 1596 163 153 11 chr5 101317479 101317851 -51219408 + RMER4A LTR ERVK 42 466 0 8 1357 345 193 0 0 chr5 101317887 101317944 -51219315 - B3A SINE B2 -141 57 1 8 1357 237 344 71 19 chr5 101317944 101318094 -51219165 - MLT1A1 LTR MaLR -250 158 1 8 1357 198 209 0 0 chr5 101318442 101318485 -51218774 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 169 236 350 48 30 chr5 101318535 101318700 -51218559 - L1MC LINE L1 -2133 5749 5582 8 1358 273 172 17 33 chr5 101320123 101320183 -51217076 - PB1D10 SINE Alu -34 83 25 8 1358 554 257 15 7 chr5 101320353 101320490 -51216769 + ID_B1 SINE B4 86 223 -1 8 1358 24 0 0 0 chr5 101321035 101321059 -51216200 + AT_rich Low_complexity Low_complexity 1 24 0 8 1358 337 272 12 0 chr5 101321158 101321239 -51216020 + RSINE1 SINE B4 55 136 -29 8 1358 409 243 34 23 chr5 101321584 101321761 -51215498 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 8 1358 261 294 140 70 chr5 101322711 101322996 -51214263 - MLT1J LTR MaLR -185 327 23 8 1358 312 315 97 7 chr5 101323301 101323445 -51213814 - MLT1A LTR MaLR -183 191 35 8 1358 403 326 15 83 chr5 101323744 101324008 -51213251 - LTR82A LTR ERVL -457 415 170 8 1358 604 228 8 0 chr5 101324443 101324570 -51212689 + B1F SINE Alu 22 149 0 8 1358 730 117 139 8 chr5 101324811 101324940 -51212319 - B1_Mus2 SINE Alu -1 146 1 8 1358 949 151 195 0 chr5 101325564 101325749 -51211510 - URR1B DNA MER1_type 0 225 5 8 1358 23 54 0 0 chr5 101326103 101326140 -51211119 + AT_rich Low_complexity Low_complexity 1 37 0 8 1358 255 250 83 0 chr5 101326417 101326489 -51210770 + ID4 SINE ID 4 81 -2 8 1358 223 213 16 16 chr5 101326906 101326968 -51210291 + (TTTG)n Simple_repeat Simple_repeat 2 63 0 8 1358 248 290 115 6 chr5 101327218 101327374 -51209885 + YREP_Mm Unknown Unknown 122 294 -1518 8 1358 578 237 43 7 chr5 101327254 101327394 -51209865 - B1F SINE Alu -2 147 3 8 1358 22 0 0 0 chr5 101328097 101328119 -51209140 + AT_rich Low_complexity Low_complexity 1 22 0 8 1358 1688 198 47 39 chr5 101328201 101328607 -51208652 + MTC LTR MaLR 12 420 -1 8 1358 952 267 191 7 chr5 101329271 101329679 -51207580 - Lx5 LINE L1 -598 6452 5970 8 1358 2349 185 61 108 chr5 101329782 101330423 -51206836 + RMER19C LTR ERVK 1 611 0 8 1358 1308 51 0 6 chr5 101330727 101330903 -51206356 - B2_Mm2 SINE B2 -20 175 1 8 1358 535 82 0 45 chr5 101331232 101331244 -51206015 - B1_Mus2 SINE Alu 0 147 136 8 1358 934 121 6 6 chr5 101331244 101331402 -51205857 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 8 1358 535 99 6 44 chr5 101331402 101331492 -51205767 - B1_Mus2 SINE Alu -12 137 47 8 1358 704 188 27 14 chr5 101331504 101331650 -51205609 - B1F2 SINE Alu 0 149 2 8 1358 663 241 118 44 chr5 101331868 101332072 -51205187 - ID_B1 SINE B4 0 224 6 8 1358 1767 118 47 50 chr5 101332133 101332453 -51204806 - ORR1A2 LTR MaLR -8 319 1 8 1358 597 64 0 0 chr5 101332821 101332899 -51204360 + (TTTC)n Simple_repeat Simple_repeat 4 81 0 8 1358 323 140 310 26 chr5 101332904 101333020 -51204239 - B2_Mm2 SINE B2 0 195 47 8 1358 1115 116 35 0 chr5 101333106 101333278 -51203981 - B2_Mm1t SINE B2 -14 179 2 8 1358 237 118 54 0 chr5 101333732 101333825 -51203434 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 8 1358 244 143 36 0 chr5 101333847 101333903 -51203356 + CT-rich Low_complexity Low_complexity 2 59 0 8 1358 1114 66 0 0 chr5 101333906 101334043 -51203216 - B1_Mus1 SINE Alu -9 139 3 8 1358 2379 66 6 3 chr5 101334517 101334851 -51202408 + IAPEY_LTR LTR ERVK 37 371 -14 8 1358 207 0 0 0 chr5 101335424 101335447 -51201812 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1358 606 271 65 10 chr5 101335879 101336080 -51201179 - MTEa LTR MaLR -8 371 160 8 1358 2010 161 86 20 chr5 101336120 101336514 -51200745 - MTC LTR MaLR -1 420 1 8 1358 414 348 0 21 chr5 101336519 101336663 -51200596 - MTEa LTR MaLR -223 156 16 8 1358 253 336 37 37 chr5 101336793 101336929 -51200330 - ID_B1 SINE B4 -8 216 81 8 1358 1551 67 0 15 chr5 101337234 101337431 -51199828 + B2_Mm2 SINE B2 2 195 0 8 1358 246 302 18 28 chr5 101338577 101338686 -51198573 + B3 SINE B2 1 108 -108 8 1358 400 342 46 21 chr5 101339251 101339445 -51197814 - Lx8 LINE L1 -493 6980 6782 8 1358 932 56 98 0 chr5 101339449 101339592 -51197667 + B2_Mm2 SINE B2 2 158 -37 8 1358 525 58 0 0 chr5 101339596 101339665 -51197594 + (GGA)n Simple_repeat Simple_repeat 3 71 0 8 1358 416 218 81 0 chr5 101339683 101339770 -51197489 - Lx8 LINE L1 -724 6749 6656 8 1358 629 211 77 18 chr5 101340249 101340525 -51196734 + RMER17C LTR ERVK 1 410 0 8 1358 283 219 0 30 chr5 101341062 101341128 -51196131 + B3A SINE B2 1 64 -134 8 1358 279 266 0 48 chr5 101341128 101341145 -51196114 + B4A SINE B4 1 79 -213 8 1358 826 173 164 20 chr5 101341185 101341380 -51195879 + URR1B DNA MER1_type 3 225 0 8 1358 283 306 190 6 chr5 101341517 101341691 -51195568 + MLT1F2 LTR MaLR 349 554 -6 8 1358 354 45 0 0 chr5 101342074 101342118 -51195141 + (CCAA)n Simple_repeat Simple_repeat 2 45 0 8 1358 996 101 0 0 chr5 101342998 101343167 -51194092 + (TCTA)n Simple_repeat Simple_repeat 2 170 0 8 1358 660 124 17 22 chr5 101343211 101343392 -51193867 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 8 1358 729 154 85 0 chr5 101343408 101343538 -51193721 - B1_Mur4 SINE Alu -8 142 2 8 1358 963 171 42 11 chr5 101343657 101343846 -51193413 + B2_Mm2 SINE B2 1 195 0 8 1358 589 226 133 6 chr5 101345094 101345259 -51192000 + B3 SINE B2 1 186 -30 8 1358 378 0 0 0 chr5 101345259 101345301 -51191958 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1358 490 281 14 86 chr5 101345301 101345345 -51191914 + B2_Mm2 SINE B2 164 195 0 8 1358 252 259 183 46 chr5 101346101 101346281 -51190978 + MIRb SINE MIR 46 254 -14 8 1358 22 35 0 0 chr5 101346457 101346486 -51190773 + AT_rich Low_complexity Low_complexity 1 29 0 8 1358 375 167 0 0 chr5 101346946 101347036 -51190223 + (TG)n Simple_repeat Simple_repeat 2 91 0 8 1358 478 261 65 43 chr5 101347116 101347300 -51189959 + B4A SINE B4 1 188 -104 8 1358 28 0 0 0 chr5 101347442 101347470 -51189789 + AT_rich Low_complexity Low_complexity 1 28 0 8 1358 1154 36 14 0 chr5 101347470 101347609 -51189650 - B1_Mm SINE Alu -5 142 2 8 1358 699 316 19 28 chr5 101348751 101348963 -51188296 - ID_B1 SINE B4 -5 219 10 8 1358 666 318 10 84 chr5 101349345 101349644 -51187615 + B4A SINE B4 5 281 -11 8 1358 238 225 25 0 chr5 101349698 101349778 -51187481 + (CA)n Simple_repeat Simple_repeat 1 82 0 9 1358 840 32 30 38 chr5 101351543 101351674 -51185585 + L1Md_F3 LINE L1 6455 6584 0 9 1358 489 286 7 21 chr5 101353739 101353882 -51183377 - B1F SINE Alu -2 147 7 9 1358 545 92 10 0 chr5 101353899 101353997 -51183262 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 9 1358 640 240 71 22 chr5 101354214 101354440 -51182819 - RMER20B LTR ERVK -263 364 128 9 1358 720 35 0 0 chr5 101354552 101354639 -51182620 + (TC)n Simple_repeat Simple_repeat 1 87 0 9 1358 1231 42 0 0 chr5 101355797 101355939 -51181320 - B1_Mus1 SINE Alu -5 143 2 9 1358 372 276 23 30 chr5 101355961 101356092 -51181167 + (CA)n Simple_repeat Simple_repeat 2 131 0 9 1358 230 289 35 80 chr5 101356093 101356206 -51181053 - RMER12 LTR ERVK -466 856 749 9 1358 366 278 115 27 chr5 101356607 101356755 -51180504 - RSINE1 SINE B4 -4 161 1 9 1358 1135 194 19 0 chr5 101356822 101357028 -51180231 - B3 SINE B2 -6 210 1 9 1358 296 258 0 43 chr5 101357536 101357629 -51179630 - MLT1A1 LTR MaLR -2 406 318 9 1358 288 310 43 37 chr5 101358042 101358206 -51179053 - LTR16A LTR ERVL -274 177 13 9 1358 222 204 0 69 chr5 101358500 101358558 -51178701 - PB1 SINE Alu -63 64 11 9 1358 535 220 105 73 chr5 101358653 101358844 -51178415 - B3A SINE B2 -1 197 1 9 1358 237 286 110 0 chr5 101358986 101359077 -51178182 - MIR SINE MIR -118 144 44 9 1358 453 260 29 9 chr5 101359534 101359639 -51177620 + PB1D10 SINE Alu 11 117 0 9 1358 424 250 10 0 chr5 101360737 101360841 -51176418 + PB1D9 SINE Alu 3 107 -13 9 1358 240 86 0 0 chr5 101360842 101360877 -51176382 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1358 1042 203 209 114 chr5 101360890 101361303 -51175956 + MT2A LTR ERVL 2 463 -70 9 1358 434 65 0 16 chr5 101361303 101361366 -51175893 + (TA)n Simple_repeat Simple_repeat 2 63 0 9 1358 1042 203 209 114 chr5 101361366 101361436 -51175823 + MT2A LTR ERVL 464 531 -2 9 1358 473 283 69 0 chr5 101361634 101361779 -51175480 + RSINE1 SINE B4 2 156 -9 9 1358 478 272 0 0 chr5 101362037 101362140 -51175119 + PB1D10 SINE Alu 5 107 -10 9 1358 216 167 0 0 chr5 101362161 101362197 -51175062 + (TTG)n Simple_repeat Simple_repeat 1 36 0 9 1358 918 56 0 0 chr5 101362263 101362389 -51174870 - B1_Mus1 SINE Alu -21 127 2 9 1358 538 168 0 0 chr5 101362390 101362485 -51174774 + MTC LTR MaLR 10 104 -317 9 1358 345 109 0 0 chr5 101362485 101362540 -51174719 + (TG)n Simple_repeat Simple_repeat 2 56 0 9 1358 250 180 0 0 chr5 101362791 101362841 -51174418 - L1MC1 LINE L1 0 6333 6284 9 1358 394 265 87 12 chr5 101363056 101363228 -51174031 - L1MC1 LINE L1 -56 6277 6093 9 1358 225 330 58 25 chr5 101363715 101363836 -51173423 + L3 LINE CR1 2879 3003 -1486 9 1358 867 62 125 0 chr5 101364004 101364148 -51173111 - B2_Mm2 SINE B2 -4 191 30 9 1358 1027 144 0 0 chr5 101364561 101364707 -51172552 + B1_Mus2 SINE Alu 1 146 -1 9 1358 22 0 0 0 chr5 101364770 101364792 -51172467 + AT_rich Low_complexity Low_complexity 1 22 0 9 1358 535 250 96 12 chr5 101364814 101364980 -51172279 - B3A SINE B2 -18 180 1 9 1358 1273 51 11 11 chr5 101364998 101365176 -51172083 + (TTCCC)n Simple_repeat Simple_repeat 3 180 0 9 1358 815 156 0 37 chr5 101365179 101365366 -51171893 + CT-rich Low_complexity Low_complexity 1 180 0 9 1358 257 170 36 36 chr5 101365368 101365423 -51171836 + polypyrimidine Low_complexity Low_complexity 3 57 0 9 1358 268 355 9 9 chr5 101365423 101365531 -51171728 - PB1D10 SINE Alu -9 108 1 9 1358 4014 147 143 48 chr5 101367176 101367393 -51169866 + RLTR25B LTR ERVK 5 223 -805 9 1358 4022 80 4 0 chr5 101367393 101367921 -51169338 + L1_Mus2 LINE L1 6037 6566 0 9 1358 4014 147 143 48 chr5 101367921 101368458 -51168801 + RLTR25B LTR ERVK 224 774 -254 9 1358 288 0 0 0 chr5 101368458 101368490 -51168769 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 9 1358 4014 147 143 48 chr5 101368490 101368542 -51168717 + RLTR25B LTR ERVK 775 863 -165 9 1358 552 56 0 0 chr5 101368542 101368614 -51168645 + (GA)n Simple_repeat Simple_repeat 1 72 0 9 1358 4014 147 143 48 chr5 101368614 101368740 -51168519 + RLTR25B LTR ERVK 864 1026 -2 9 1358 260 256 112 34 chr5 101369399 101369488 -51167771 - ORR1E LTR MaLR -263 96 1 9 1358 3390 101 22 12 chr5 101369539 101370038 -51167221 + Lx3C LINE L1 6466 6969 -7 9 1358 22 0 0 0 chr5 101370047 101370069 -51167190 + AT_rich Low_complexity Low_complexity 1 22 0 9 1358 1318 40 0 17 chr5 101370966 101371197 -51166062 + (TTCC)n Simple_repeat Simple_repeat 1 227 0 9 1358 414 0 0 0 chr5 101371197 101371242 -51166017 + (TC)n Simple_repeat Simple_repeat 2 47 0 9 1358 839 167 15 0 chr5 101371242 101371374 -51165885 - B1_Mur4 SINE Alu -12 138 5 9 1358 254 333 28 83 chr5 101371675 101371819 -51165440 - MER21B LTR ERV1 -169 694 559 9 1358 188 291 39 138 chr5 101372689 101372892 -51164367 - L2a LINE L2 -19 3407 3225 9 1358 240 169 16 48 chr5 101374006 101374068 -51163191 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 9 1358 600 280 40 0 chr5 101374068 101374243 -51163016 - B3A SINE B2 -16 182 1 9 1358 225 0 0 0 chr5 101375689 101375714 -51161545 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 9 1358 543 192 212 0 chr5 101375722 101375868 -51161391 - ID_B1 SINE B4 -20 204 28 9 1358 257 189 94 0 chr5 101375822 101375875 -51161384 - ID4_ SINE ID -11 72 15 9 1358 448 204 41 0 chr5 101377899 101377997 -51159262 - B3 SINE B2 -114 102 1 9 1358 1182 41 0 26 chr5 101378011 101378162 -51159097 - B1_Mm SINE Alu 0 147 1 9 1358 514 284 51 35 chr5 101379057 101379328 -51157931 - L1MB4 LINE L1 -54 6129 5869 9 1358 234 0 0 0 chr5 101379594 101379620 -51157639 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1358 316 301 7 89 chr5 101379637 101379783 -51157476 + ID_B1 SINE B4 82 215 -9 9 1358 675 0 0 0 chr5 101380072 101380147 -51157112 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 9 1358 220 264 113 90 chr5 101380175 101380308 -51156951 - MIRm SINE MIR -140 136 1 9 1358 486 0 0 0 chr5 101381495 101381549 -51155710 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1358 372 198 50 81 chr5 101381619 101381718 -51155541 - PB1D7 SINE Alu -7 113 18 9 1358 393 44 29 14 chr5 101381884 101381953 -51155306 + (TTTTTG)n Simple_repeat Simple_repeat 3 72 0 9 1358 487 112 0 22 chr5 101383069 101383160 -51154099 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 9 1358 1086 55 0 0 chr5 101383177 101383322 -51153937 - B2_Mm2 SINE B2 -50 145 1 9 1358 451 314 174 53 chr5 101383521 101384203 -51153056 - L1MD2 LINE L1 -10 6349 5585 9 1358 411 235 189 32 chr5 101384208 101384425 -51152834 - Lx8 LINE L1 -2 7471 7221 9 1358 28 0 0 0 chr5 101384842 101384870 -51152389 + AT_rich Low_complexity Low_complexity 1 28 0 9 1358 1178 75 0 0 chr5 101384872 101385019 -51152240 - B1_Mus1 SINE Alu 0 148 2 9 1358 480 177 327 0 chr5 101385189 101385302 -51151957 + B3A SINE B2 1 150 -48 9 1358 528 16 0 0 chr5 101385314 101385375 -51151884 + (CA)n Simple_repeat Simple_repeat 1 61 0 9 1358 712 161 8 0 chr5 101385394 101385512 -51151747 + B1_Mur4 SINE Alu 1 119 -31 9 1358 1488 129 55 0 chr5 101385512 101385729 -51151530 + Lx5 LINE L1 6334 6562 -488 9 1358 249 274 37 28 chr5 101386314 101386423 -51150836 - Tigger10 DNA Tigger -567 1276 1167 9 1358 206 164 18 0 chr5 101386710 101386765 -51150494 + GA-rich Low_complexity Low_complexity 3 58 0 9 1358 258 242 0 88 chr5 101386953 101387089 -51150170 + (TG)n Simple_repeat Simple_repeat 1 124 0 9 1358 596 114 40 7 chr5 101387617 101387767 -51149492 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 9 1358 22 0 0 0 chr5 101387771 101387793 -51149466 + AT_rich Low_complexity Low_complexity 1 22 0 9 1358 373 313 66 16 chr5 101389040 101389222 -51148037 + MER115 DNA Tip100 491 681 -12 9 1358 288 313 122 39 chr5 101389427 101389583 -51147676 - MLT1F2 LTR MaLR -91 469 301 9 1358 749 153 363 0 chr5 101389682 101389839 -51147420 - B3 SINE B2 0 216 3 9 1358 189 171 0 0 chr5 101389840 101389875 -51147384 + CT-rich Low_complexity Low_complexity 2 36 0 9 1358 713 167 61 0 chr5 101389902 101390034 -51147225 - B1_Mur3 SINE Alu 0 149 10 9 1358 756 141 256 25 chr5 101391747 101391907 -51145352 - B3 SINE B2 -19 197 1 9 1358 335 354 40 62 chr5 101392196 101392323 -51144936 + LTR78 LTR ERV1 126 247 -1057 9 1358 1385 131 55 14 chr5 101392323 101392540 -51144719 + URR1A DNA MER1_type 1 226 0 9 1358 335 354 40 62 chr5 101392540 101392686 -51144573 + LTR78 LTR ERV1 248 393 -911 9 1358 822 169 6 22 chr5 101392778 101392960 -51144299 + CT-rich Low_complexity Low_complexity 2 180 0 9 1358 4093 103 15 15 chr5 101392989 101393573 -51143686 - Lx2 LINE L1 0 6997 6414 9 1358 651 214 29 0 chr5 101394077 101394217 -51143042 + B1_Mur1 SINE Alu 6 149 0 9 1358 220 377 7 7 chr5 101395853 101396000 -51141259 + (TA)n Simple_repeat Simple_repeat 2 148 0 9 1358 1067 267 110 63 chr5 101396006 101396514 -51140745 + RMER5 LTR ERV1 1 532 -2 9 1358 310 147 14 14 chr5 101396702 101396771 -51140488 + CT-rich Low_complexity Low_complexity 2 70 0 9 1358 2979 52 46 28 chr5 101397866 101398259 -51139000 + MTB LTR MaLR 1 400 0 9 1358 218 32 32 0 chr5 101398357 101398388 -51138871 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 9 1358 249 57 0 0 chr5 101398388 101398423 -51138836 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1358 410 270 17 17 chr5 101398444 101398561 -51138698 - RSINE1 SINE B4 -38 127 11 9 1358 411 231 39 83 chr5 101398563 101398719 -51138540 - B1_Mur2 SINE Alu 0 149 1 9 1358 1866 241 112 48 chr5 101399039 101399620 -51137639 - RMER20B LTR ERVK 0 627 10 9 1358 660 259 21 0 chr5 101400429 101400572 -51136687 + B3A SINE B2 2 147 -51 9 1358 567 85 0 0 chr5 101400589 101400671 -51136588 + (CA)n Simple_repeat Simple_repeat 2 83 0 1 1358 500 297 115 21 chr5 101401639 101402027 -51135232 + L1M2 LINE L1 1972 2476 -4106 1 1358 2238 298 44 106 chr5 101402031 101402494 -51134765 + L1M2 LINE L1 4415 4818 -1764 1 1358 279 0 0 0 chr5 101402494 101402525 -51134734 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1358 2238 298 44 106 chr5 101402525 101403777 -51133482 + L1M2 LINE L1 4819 6025 -557 1 1358 412 293 69 0 chr5 101403789 101403905 -51133354 + RSINE1 SINE B4 6 129 -36 1 1358 2206 178 262 41 chr5 101403954 101404558 -51132701 - RMER19A LTR ERVK 0 737 1 1 1358 444 310 8 23 chr5 101405106 101405238 -51132021 - ID_B1 SINE B4 -91 133 4 1 1358 23 33 0 0 chr5 101405238 101405268 -51131991 + AT_rich Low_complexity Low_complexity 1 30 0 1 1358 291 207 17 0 chr5 101405285 101405343 -51131916 + ID4_ SINE ID 12 70 -13 1 1358 250 281 0 30 chr5 101405287 101405353 -51131906 + tRNA-Gly-GGY tRNA tRNA 8 71 -3 1 1358 481 105 12 0 chr5 101405462 101405548 -51131711 + L1_Mus3 LINE L1 6551 6637 -1 1 1358 203 324 14 0 chr5 101405963 101406034 -51131225 - L3 LINE CR1 -1034 3455 3384 1 1358 225 307 93 0 chr5 101406880 101406955 -51130304 + PB1D10 SINE Alu 3 84 -33 1 1358 261 210 0 0 chr5 101407280 101407342 -51129917 + (CATA)n Simple_repeat Simple_repeat 4 65 0 1 1358 1545 289 15 50 chr5 101407342 101407944 -51129315 - Lx8 LINE L1 -128 7516 6793 1 1358 732 178 20 33 chr5 101407944 101408087 -51129172 + B1_Mur4 SINE Alu 1 142 -8 1 1358 1313 56 0 11 chr5 101408087 101408267 -51128992 + (CCAA)n Simple_repeat Simple_repeat 2 179 0 1 1358 1545 337 22 90 chr5 101408274 101408795 -51128464 - Lx8 LINE L1 -681 6792 6344 1 1358 30 45 0 0 chr5 101409013 101409057 -51128202 + AT_rich Low_complexity Low_complexity 1 44 0 1 1358 555 53 0 0 chr5 101409112 101409187 -51128072 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1358 520 207 84 13 chr5 101409187 101409326 -51127933 - ORR1D2 LTR MaLR 0 370 224 1 1358 437 202 12 0 chr5 101409332 101409416 -51127843 - ORR1D2 LTR MaLR -284 86 2 1 1358 227 159 0 43 chr5 101410571 101410617 -51126642 - ID_B1 SINE B4 -5 219 176 1 1358 217 215 235 25 chr5 101410617 101410652 -51126607 - PB1D10 SINE Alu -5 112 15 1 1358 296 324 0 0 chr5 101412132 101412206 -51125053 + polypyrimidine Low_complexity Low_complexity 5 78 0 1 1358 375 23 0 0 chr5 101412244 101412288 -51124971 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1358 334 136 33 33 chr5 101412479 101412560 -51124699 + L1_Mur3 LINE L1 4833 4916 -1230 1 1358 12885 141 34 29 chr5 101412553 101413367 -51123892 - L1_Mur3 LINE L1 -378 5502 4664 1 1358 252 0 0 0 chr5 101413367 101413395 -51123864 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1358 12885 141 34 29 chr5 101413395 101414894 -51122365 - L1_Mur3 LINE L1 -1217 4663 3179 1 1358 1478 165 81 0 chr5 101414891 101415224 -51122035 - L1_Mur3 LINE L1 -4248 1632 1273 1 1358 2356 51 0 13 chr5 101415224 101415522 -51121737 + L1Md_F3 LINE L1 6278 6571 -13 1 1358 233 403 0 0 chr5 101415522 101415599 -51121660 - RSINE1 SINE B4 -66 99 23 1 1358 298 350 7 28 chr5 101416034 101416175 -51121084 + MER67C LTR ERV1 258 395 -316 1 1358 373 0 105 0 chr5 101416233 101416290 -51120969 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 1 1358 1147 64 0 0 chr5 101416567 101416707 -51120552 + B1_Mus1 SINE Alu 2 141 -7 1 1358 4718 6 2 0 chr5 101416710 101417229 -51120030 + L1Md_A LINE L1 6063 6582 0 1 1358 209 204 0 0 chr5 101417235 101417284 -51119975 + A-rich Low_complexity Low_complexity 1 49 0 1 1358 262 311 19 32 chr5 101417588 101417744 -51119515 + L1MB8 LINE L1 5970 6123 -55 1 1358 1203 29 0 0 chr5 101417755 101417894 -51119365 + B1_Mus1 SINE Alu 1 139 -9 1 1358 216 0 0 0 chr5 101417894 101417918 -51119341 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1358 1403 307 90 20 chr5 101418108 101418998 -51118261 + L1M5 LINE L1 4326 5277 -869 1 1358 415 241 113 5 chr5 101419446 101419596 -51117663 + L1_Mur3 LINE L1 5471 5641 -692 1 1358 226 287 72 72 chr5 101419673 101419812 -51117447 + L1M5 LINE L1 5791 5929 -235 1 1358 207 176 0 0 chr5 101420170 101420204 -51117055 + A-rich Low_complexity Low_complexity 1 34 0 1 1358 395 267 66 40 chr5 101420334 101420486 -51116773 + MLT1-int LTR MaLR 957 1112 -259 1 1358 307 281 70 55 chr5 101420653 101420781 -51116478 + MLT2B3 LTR ERVL 398 527 -27 1 1358 1030 246 68 71 chr5 101420782 101421149 -51116110 + ORR1D2 LTR MaLR 5 370 0 1 1358 559 215 11 17 chr5 101421179 101421359 -51115900 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 1358 197 65 0 31 chr5 101421699 101421731 -51115528 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 1 1358 1019 89 0 0 chr5 101421731 101421877 -51115382 - B1_Mus2 SINE Alu 0 147 2 1 1358 618 42 0 0 chr5 101421892 101421964 -51115295 - tRNA-Asp-GAY tRNA tRNA -3 72 1 1 1358 653 312 91 82 chr5 101422031 101422404 -51114855 + Lx8 LINE L1 5957 6326 -1147 1 1358 2721 92 37 3 chr5 101422404 101422783 -51114476 - ORR1B1 LTR MaLR -2 392 1 1 1358 956 90 153 24 chr5 101422786 101422956 -51114303 + B2_Mm2 SINE B2 2 193 -2 1 1358 653 312 91 82 chr5 101422956 101423063 -51114196 + Lx8 LINE L1 6327 6445 -1028 1 1358 2031 165 30 67 chr5 101423131 101423652 -51113607 - RLTR31A_Mm LTR ERVK -1 560 1 1 1358 1385 281 143 39 chr5 101423652 101424417 -51112842 + Lx8 LINE L1 6627 7471 -2 1 1358 414 0 0 0 chr5 101424764 101424810 -51112449 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1358 202 344 0 0 chr5 101425489 101425553 -51111706 - L2a LINE L2 -6 3420 3357 1 1358 586 261 25 6 chr5 101425992 101426150 -51111109 - MTEa LTR MaLR -202 177 17 1 1358 1389 59 0 0 chr5 101426688 101426943 -51110316 + (TG)n Simple_repeat Simple_repeat 1 255 0 1 1358 2250 94 45 0 chr5 101427180 101427489 -51109770 - ORR1A2 LTR MaLR 0 327 5 1 1358 270 0 0 0 chr5 101427641 101427671 -51109588 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1358 432 0 0 0 chr5 101428054 101428102 -51109157 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 1 1358 249 310 12 12 chr5 101429312 101429397 -51107862 + MTEa LTR MaLR 295 379 0 1 1358 1574 347 106 69 chr5 101429463 101429734 -51107525 + MTE-int LTR MaLR 66 335 -1245 1 1358 1422 79 21 0 chr5 101429734 101429924 -51107335 + B2_Mm2 SINE B2 1 194 -1 1 1358 1574 347 106 69 chr5 101429924 101431086 -51106173 + MTE-int LTR MaLR 336 1552 -28 1 1358 1797 216 54 32 chr5 101431392 101431579 -51105680 - RMER19C LTR ERVK 0 611 416 1 1358 411 21 0 0 chr5 101431579 101431627 -51105632 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1 1358 1797 216 54 32 chr5 101431627 101431904 -51105355 - RMER19C LTR ERVK -196 415 138 1 1358 362 231 119 40 chr5 101432306 101432432 -51104827 + ORR1D1 LTR MaLR 239 374 0 1 1358 911 104 0 0 chr5 101433024 101433158 -51104101 + ORR1C2 LTR MaLR 251 384 0 1 1358 435 38 0 0 chr5 101433173 101433226 -51104033 + (TATG)n Simple_repeat Simple_repeat 2 54 0 1 1358 756 129 24 0 chr5 101434164 101434288 -51102971 - B3 SINE B2 -3 213 87 1 1358 1245 176 24 0 chr5 101434368 101434578 -51102681 - B3 SINE B2 0 216 2 1 1358 329 205 25 13 chr5 101434771 101434850 -51102409 - ID4 SINE ID -3 80 1 1 1358 260 254 14 27 chr5 101434850 101434923 -51102336 + (CCCCG)n Simple_repeat Simple_repeat 2 73 0 1 1358 272 294 119 0 chr5 101435722 101435831 -51101428 - B3A SINE B2 -1 197 76 1 1358 1560 196 93 79 chr5 101436168 101436600 -51100659 - RLTR18B LTR ERVK -74 438 1 1 1358 34 0 0 0 chr5 101436737 101436771 -51100488 + AT_rich Low_complexity Low_complexity 1 34 0 1 1358 241 368 44 22 chr5 101436945 101437081 -51100178 + MamRep38 DNA hAT 1 139 -156 1 1358 2622 71 30 0 chr5 101437426 101437762 -51099497 + ORR1A1 LTR MaLR 1 346 0 1 1358 4846 66 15 6 chr5 101437762 101438494 -51098765 + ORR1A1-int LTR MaLR 1 739 -1053 1 1358 6815 59 6 1 chr5 101438500 101439434 -51097825 - ORR1A2-int LTR MaLR -134 1658 720 1 1358 1072 97 137 0 chr5 101439540 101439715 -51097544 - ORR1A2 LTR MaLR -128 199 1 1 1358 885 218 8 89 chr5 101439720 101439967 -51097292 + RLTR20C LTR ERVK 308 534 0 1 1358 276 291 78 43 chr5 101439972 101440087 -51097172 - ORR1D1 LTR MaLR -250 124 6 1 1358 8944 69 1 0 chr5 101440159 101441282 -51095977 + L1Md_F2 LINE L1 4463 5586 -297 1 1358 7798 61 11 5 chr5 101441282 101442271 -51094988 + L1Md_F2 LINE L1 5587 6581 -1 1 1358 4269 71 5 2 chr5 101444239 101444790 -51092469 - L1_Mus1 LINE L1 0 6567 6015 1 1358 4460 51 0 0 chr5 101444790 101445453 -51091806 + L1_Mus1 LINE L1 5356 6018 -548 1 1358 642 188 118 59 chr5 101446997 101447201 -51090058 - B3 SINE B2 0 216 1 1 1358 300 162 0 81 chr5 101447231 101447305 -51089954 - Lx4A LINE L1 0 7058 6991 1 1358 251 261 125 9 chr5 101447364 101447476 -51089783 + B3A SINE B2 2 126 -72 1 1358 811 224 39 6 chr5 101448042 101448222 -51089037 - B3 SINE B2 -16 200 15 1 1358 633 237 8 22 chr5 101448327 101448461 -51088798 - B1_Mur1 SINE Alu -7 142 11 1 1358 3244 41 26 3 chr5 101448482 101448873 -51088386 - MTB LTR MaLR 0 400 1 1 1358 324 333 0 0 chr5 101448917 101449028 -51088231 - PB1D10 SINE Alu -5 112 2 1 1358 28 29 0 0 chr5 101449277 101449312 -51087947 + AT_rich Low_complexity Low_complexity 1 35 0 1 1358 369 274 150 0 chr5 101449562 101449675 -51087584 - B1_Mur2 SINE Alu -16 133 4 1 1359 887 187 78 34 chr5 101451126 101451331 -51085928 - B3 SINE B2 -1 215 2 1 1359 289 16 127 0 chr5 101451483 101451546 -51085713 + (TTTTTA)n Simple_repeat Simple_repeat 6 76 0 1 1359 342 0 0 0 chr5 101452049 101452087 -51085172 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1359 806 125 0 22 chr5 101452437 101452617 -51084642 + (TA)n Simple_repeat Simple_repeat 2 177 0 1 1359 375 121 0 0 chr5 101452659 101452717 -51084542 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1359 265 234 51 41 chr5 101452922 101453020 -51084239 - MLT1F2 LTR MaLR -316 244 146 1 1359 253 313 138 42 chr5 101454001 101454241 -51083018 - MLT1L LTR MaLR 0 610 348 1 1359 279 288 0 0 chr5 101454703 101454783 -51082476 - ID4 SINE ID -2 81 2 1 1359 790 236 17 0 chr5 101455153 101455331 -51081928 - B3A SINE B2 -16 182 2 1 1359 23 0 0 0 chr5 101455709 101455732 -51081527 + AT_rich Low_complexity Low_complexity 1 23 0 1 1359 1794 289 27 43 chr5 101456886 101457630 -51079629 + L1MA5 LINE L1 4720 5451 -429 1 1359 6782 205 89 11 chr5 101457635 101459089 -51078170 + Lx7 LINE L1 6129 7696 0 1 1359 889 298 79 12 chr5 101459071 101459502 -51077757 + L1MA5 LINE L1 5462 5921 -379 1 1359 337 217 0 0 chr5 101460696 101460765 -51076494 + PB1D10 SINE Alu 40 108 -9 1 1359 1233 95 0 0 chr5 101464271 101464507 -51072752 + (GGA)n Simple_repeat Simple_repeat 1 236 0 1 1359 1736 141 8 111 chr5 101464879 101465231 -51072028 - ORR1A3 LTR MaLR -8 318 3 1 1359 1160 271 37 29 chr5 101465354 101465730 -51071529 - MTEa LTR MaLR 0 379 1 1 1359 330 278 20 20 chr5 101465738 101465837 -51071422 - ID_B1 SINE B4 -39 185 87 1 1359 7668 34 0 0 chr5 101467142 101468031 -51069228 + L1Md_T LINE L1 5694 6582 0 1 1359 618 89 0 0 chr5 101468621 101468711 -51068548 + (CA)n Simple_repeat Simple_repeat 1 90 0 1 1359 306 0 0 0 chr5 101468711 101468744 -51068515 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1359 336 252 65 40 chr5 101470031 101470155 -51067104 - ORR1E LTR MaLR -195 164 38 1 1359 494 203 7 0 chr5 101470155 101470298 -51066961 + (CA)n Simple_repeat Simple_repeat 2 145 0 1 1359 1258 143 76 0 chr5 101470479 101470689 -51066570 + URR1A DNA MER1_type 1 226 0 1 1359 356 236 230 0 chr5 101471026 101471204 -51066055 - MER2 DNA MER2_type -16 329 111 1 1359 688 21 42 0 chr5 101471385 101471481 -51065778 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 1 1359 23 0 0 0 chr5 101471944 101471967 -51065292 + AT_rich Low_complexity Low_complexity 1 23 0 1 1359 5706 81 14 10 chr5 101472845 101473640 -51063619 - L1_Mus3 LINE L1 0 6638 5841 1 1359 215 277 0 0 chr5 101475021 101475068 -51062191 + MIRb SINE MIR 210 256 -12 1 1359 1191 128 133 0 chr5 101475123 101475319 -51061940 - URR1A DNA MER1_type 0 226 5 1 1359 5337 142 9 44 chr5 101475329 101475700 -51061559 + Lx LINE L1 4998 5359 -524 1 1359 1175 68 0 13 chr5 101475700 101475840 -51061419 + B1_Mus1 SINE Alu 1 140 -8 1 1359 504 72 0 0 chr5 101475840 101475909 -51061350 + (CAA)n Simple_repeat Simple_repeat 2 70 0 1 1359 8020 94 16 12 chr5 101475917 101477227 -51060032 + Lx LINE L1 5360 6653 -1 1 1359 1851 194 147 51 chr5 101477448 101477555 -51059704 - RMER1B Other Other 0 1066 949 1 1359 261 0 0 0 chr5 101477555 101477584 -51059675 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1359 1851 194 147 51 chr5 101477584 101477944 -51059315 - RMER1B Other Other -118 948 555 1 1359 1068 231 5 0 chr5 101478910 101479118 -51058141 + B3 SINE B2 8 216 0 1 1359 1121 8 0 15 chr5 101479551 101479686 -51057573 + (TCTCCC)n Simple_repeat Simple_repeat 1 133 0 1 1359 432 0 0 0 chr5 101479694 101479742 -51057517 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1359 198 287 79 22 chr5 101480255 101480344 -51056915 + L2b LINE L2 3281 3374 -1 1 1359 599 0 14 0 chr5 101480540 101480611 -51056648 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1359 411 250 0 100 chr5 101481154 101481274 -51055985 - PB1D10 SINE Alu -9 108 1 1 1359 411 372 16 90 chr5 101481638 101481960 -51055299 - MLT1A LTR MaLR -45 329 32 1 1359 401 116 0 0 chr5 101482277 101482346 -51054913 - Lx LINE L1 -6 6648 6580 1 1359 2884 39 0 3 chr5 101482346 101482684 -51054575 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1359 26191 31 30 12 chr5 101482684 101485786 -51051473 + IAPEz-int LTR ERVK 8 3165 -3316 1 1359 10032 29 2 4 chr5 101485775 101486915 -51050344 + IAPEz-int LTR ERVK 5345 6481 0 1 1359 2884 39 0 3 chr5 101486915 101487253 -51050006 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1359 2560 106 4 9 chr5 101487253 101487631 -51049628 - Lx LINE L1 -69 6585 6215 1 1359 365 250 130 65 chr5 101489211 101489365 -51047894 + MER20 DNA MER1_type 3 166 -53 1 1359 324 148 0 0 chr5 101489721 101489782 -51047477 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1359 234 0 0 0 chr5 101489782 101489808 -51047451 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1359 366 238 109 45 chr5 101491386 101491496 -51045763 - PB1D10 SINE Alu 0 127 11 1 1359 226 248 0 158 chr5 101491710 101491830 -51045429 + MT2B LTR ERVL 157 257 -344 1 1359 628 185 0 43 chr5 101491734 101491875 -51045384 + B1F2 SINE Alu 12 146 -3 1 1359 716 246 54 25 chr5 101491907 101492111 -51045148 + B3 SINE B2 1 210 -6 1 1359 214 286 27 54 chr5 101493115 101493189 -51044070 + PB1D10 SINE Alu 25 96 -21 1 1359 460 288 113 67 chr5 101493915 101494198 -51043061 + MLT1A LTR MaLR 23 318 -56 1 1359 383 60 0 0 chr5 101494249 101494299 -51042960 + tRNA-Lys-AAG tRNA tRNA 27 76 0 1 1359 235 284 37 0 chr5 101494791 101494872 -51042387 + L1M4c LINE L1 1419 1502 -4882 1 1359 631 300 107 34 chr5 101494929 101495377 -51041882 + L1M4c LINE L1 4801 5281 -1095 1 1359 298 289 0 0 chr5 101495482 101495558 -51041701 + GA-rich Low_complexity Low_complexity 5 80 0 1 1359 455 296 15 46 chr5 101495564 101495759 -51041500 + L1M4c LINE L1 5292 5480 -896 1 1359 738 35 52 0 chr5 101495882 101495997 -51041262 + (TCTA)n Simple_repeat Simple_repeat 2 122 0 1 1359 213 345 27 33 chr5 101496310 101496493 -51040766 - MIR SINE MIR -18 244 63 1 1359 857 268 28 31 chr5 101497848 101498102 -51039157 + B4 SINE B4 2 254 -38 1 1359 4367 211 45 61 chr5 101498106 101499694 -51037565 - Lx5 LINE L1 -272 6778 5236 1 1359 1778 147 19 19 chr5 101499687 101500000 -51037259 - Lx5 LINE L1 -1475 4402 4090 1 1359 8295 165 72 4 chr5 101500000 101500232 -51037027 - L1_Mur2 LINE L1 -1788 4089 3856 1 1359 293 0 27 0 chr5 101500232 101500269 -51036990 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 2 1359 8295 165 72 4 chr5 101500269 101501642 -51035617 - L1_Mur2 LINE L1 -2022 3855 2376 1 1359 318 398 42 31 chr5 101502098 101502290 -51034969 + MIRb SINE MIR 54 247 -21 3 1359 480 18 0 0 chr5 101502505 101502562 -51034697 + (TC)n Simple_repeat Simple_repeat 2 58 0 4 1359 282 224 0 0 chr5 101502562 101502647 -51034612 + (TG)n Simple_repeat Simple_repeat 1 85 0 5 1359 317 133 33 0 chr5 101502841 101502901 -51034358 + CT-rich Low_complexity Low_complexity 4 65 0 6 1359 261 0 0 0 chr5 101504209 101504238 -51033021 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1359 204 135 0 0 chr5 101504240 101504277 -51032982 + (CATA)n Simple_repeat Simple_repeat 4 40 0 8 1359 1375 0 25 0 chr5 101504300 101504496 -51032763 + (TCTA)n Simple_repeat Simple_repeat 1 200 0 9 1359 439 239 0 0 chr5 101504502 101504594 -51032665 + MTD LTR MaLR 327 418 -1 1 1359 227 95 24 0 chr5 101504595 101504637 -51032622 + L1_Rod LINE L1 5183 5225 -622 1 1359 2241 250 26 25 chr5 101504616 101505302 -51031957 - Lx7 LINE L1 -1780 5916 5189 1 1359 449 174 23 0 chr5 101505318 101505404 -51031855 - MTD LTR MaLR 0 419 332 1 1359 708 216 14 7 chr5 101505425 101505565 -51031694 - B1_Mur3 SINE Alu 0 149 9 1 1359 1445 207 87 32 chr5 101505544 101505854 -51031405 - MTD LTR MaLR -85 334 8 1 1359 1309 237 14 89 chr5 101505873 101506299 -51030960 - Lx7 LINE L1 -673 5174 4781 1 1359 6317 74 25 6 chr5 101506357 101507512 -51029747 + L1VL2 LINE L1 274 1447 -2168 1 1359 3733 20 2 0 chr5 101507512 101507907 -51029352 - MTA_Mm LTR MaLR 0 396 1 1 1359 6317 80 13 8 chr5 101507907 101508279 -51028980 + L1VL2 LINE L1 1448 1826 -1789 1 1359 313 303 0 0 chr5 101508423 101508512 -51028747 - PB1D10 SINE Alu -2 115 27 1 1359 309 232 73 0 chr5 101509530 101509612 -51027647 + L1M2 LINE L1 2745 2832 -3311 1 1359 2106 87 132 3 chr5 101509745 101510034 -51027225 + ORR1A3 LTR MaLR 1 326 0 1 1359 235 344 31 20 chr5 101510483 101510581 -51026678 + MIRb SINE MIR 120 218 -50 2 1359 512 256 12 43 chr5 101510942 101511105 -51026154 + L1MA5 LINE L1 6143 6300 0 2 1359 1450 170 0 0 chr5 101512083 101512306 -51024953 + URR1B DNA MER1_type 2 224 -1 2 1359 618 310 96 40 chr5 101513452 101513849 -51023410 - Lx8 LINE L1 -1 7472 7054 2 1359 363 44 0 0 chr5 101514042 101514087 -51023172 + (GGGA)n Simple_repeat Simple_repeat 1 45 0 2 1359 353 284 102 16 chr5 101514231 101514382 -51022877 - B3A SINE B2 -34 182 22 2 1359 2116 217 52 31 chr5 101514709 101515231 -51022028 + RMER15 LTR ERVL 1 533 -42 2 1359 186 191 0 0 chr5 101515361 101515408 -51021851 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 1359 1241 82 0 0 chr5 101515413 101515560 -51021699 + B1_Mm SINE Alu 1 147 0 2 1359 352 129 58 23 chr5 101515582 101515756 -51021503 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1359 436 241 7 72 chr5 101515849 101516001 -51021258 - Lx6 LINE L1 -26 7434 7293 3 1359 313 290 9 18 chr5 101516051 101516160 -51021099 - MER2 DNA MER2_type -153 192 85 3 1359 3004 138 14 5 chr5 101516212 101516656 -51020603 - Lx2B LINE L1 0 7000 6553 3 1359 386 319 110 6 chr5 101518923 101519087 -51018172 - MER58A DNA MER1_type -1 223 43 3 1359 780 215 15 0 chr5 101521121 101521256 -51016003 + B1_Mur1 SINE Alu 1 137 -12 3 1359 261 0 0 0 chr5 101521256 101521285 -51015974 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 3 1359 249 83 0 0 chr5 101521320 101521356 -51015903 + (TAA)n Simple_repeat Simple_repeat 2 37 0 3 1359 281 253 40 0 chr5 101522770 101522845 -51014414 - MLT1A LTR MaLR -206 168 91 3 1359 26 74 0 0 chr5 101522992 101523046 -51014213 + AT_rich Low_complexity Low_complexity 1 54 0 3 1359 204 326 45 0 chr5 101523095 101523184 -51014075 - MIRb SINE MIR -22 246 154 3 1359 510 346 81 37 chr5 101523201 101523474 -51013785 - MLT1C LTR MaLR 0 467 183 4 1359 986 134 116 12 chr5 101523514 101523687 -51013572 + B2_Mm2 SINE B2 2 192 -3 4 1359 411 145 0 0 chr5 101523794 101523863 -51013396 + (TCC)n Simple_repeat Simple_repeat 2 70 0 4 1359 303 240 64 55 chr5 101523917 101524027 -51013232 - Lx8 LINE L1 -326 7147 7037 4 1359 415 247 99 61 chr5 101524027 101524208 -51013051 - MLT1C LTR MaLR -219 248 61 4 1359 375 23 0 0 chr5 101524217 101524261 -51012998 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1359 242 306 12 12 chr5 101524782 101524868 -51012391 + CT-rich Low_complexity Low_complexity 3 88 0 4 1359 551 266 16 0 chr5 101524875 101524999 -51012260 - ID_B1 SINE B4 -13 211 86 4 1359 792 310 71 50 chr5 101525270 101525552 -51011707 + B4 SINE B4 1 288 -4 4 1359 306 0 0 0 chr5 101525557 101525591 -51011668 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1359 403 307 75 34 chr5 101525638 101525877 -51011382 - L1M2 LINE L1 -3006 3839 3591 5 1359 701 286 9 52 chr5 101525912 101526141 -51011118 + Lx8 LINE L1 6348 6566 -907 5 1359 2251 113 0 0 chr5 101526148 101526466 -51010793 - ORR1A3 LTR MaLR -8 318 1 5 1359 826 212 198 22 chr5 101526466 101526688 -51010571 + Lx8 LINE L1 6566 6826 -647 5 1359 564 229 7 48 chr5 101526688 101526835 -51010424 + RLTR11B LTR ERVK 2 142 -311 5 1359 1503 268 103 14 chr5 101526850 101527334 -51009925 + Lx8 LINE L1 6824 7350 -123 5 1359 341 241 130 7 chr5 101527392 101527538 -51009721 + MER53 DNA hAT 30 193 0 5 1359 422 320 126 0 chr5 101527696 101527871 -51009388 + MER20 DNA MER1_type 23 219 0 5 1359 596 281 22 22 chr5 101527944 101528173 -51009086 - L1M2 LINE L1 -3264 3581 3353 5 1359 1378 157 124 29 chr5 101528188 101528304 -51008955 - RMER1B Other Other 0 1066 957 5 1359 342 0 0 0 chr5 101528304 101528342 -51008917 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1359 1378 157 124 29 chr5 101528342 101528500 -51008759 - RMER1B Other Other -110 956 766 5 1359 313 215 12 12 chr5 101528740 101528820 -51008439 - RMER1B Other Other -927 139 60 5 1359 683 279 124 29 chr5 101528865 101529238 -51008021 - L1_Rod LINE L1 -3170 2677 2244 5 1359 426 200 58 124 chr5 101529246 101529365 -51007894 - ORR1D1 LTR MaLR -4 366 256 5 1359 242 29 29 0 chr5 101529365 101529400 -51007859 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1359 841 213 16 48 chr5 101529400 101529576 -51007683 - ORR1D1 LTR MaLR -115 255 21 5 1359 375 279 57 36 chr5 101529582 101529790 -51007469 - L1_Rod LINE L1 -3593 2254 2048 5 1359 1815 201 46 48 chr5 101529869 101530281 -51006978 + MTD LTR MaLR 1 411 -8 6 1359 838 317 119 12 chr5 101530299 101531013 -51006246 - L1M2 LINE L1 -3951 2631 1809 5 1359 207 88 0 0 chr5 101531690 101531724 -51005535 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 6 1359 198 209 0 0 chr5 101532222 101532265 -51004994 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 6 1359 24 53 0 0 chr5 101532367 101532405 -51004854 + AT_rich Low_complexity Low_complexity 1 38 0 6 1359 662 243 27 27 chr5 101532534 101532682 -51004577 - B1F SINE Alu 0 149 2 6 1359 278 292 195 17 chr5 101533927 101534101 -51003158 - MIR SINE MIR -27 235 31 6 1359 783 231 7 7 chr5 101534124 101534272 -51002987 - B1_Mur2 SINE Alu 0 149 2 6 1359 379 359 63 5 chr5 101535064 101535271 -51001988 + MER20 DNA MER1_type 1 219 0 6 1359 469 356 113 10 chr5 101535900 101536209 -51001050 - Charlie4a DNA MER1_type -155 353 13 6 1359 212 387 25 21 chr5 101536679 101536959 -51000300 - L2 LINE L2 -2117 1302 1022 7 1359 333 0 0 0 chr5 101537201 101537238 -51000021 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1359 2332 62 3 17 chr5 101537643 101537937 -50999322 - L1Md_F2 LINE L1 -6 6576 6287 7 1359 32 43 0 0 chr5 101538716 101538762 -50998497 + AT_rich Low_complexity Low_complexity 1 46 0 7 1359 1182 271 108 42 chr5 101538811 101539555 -50997704 - Charlie2b DNA MER1_type -139 2643 1851 7 1359 225 0 0 0 chr5 101539922 101539947 -50997312 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 7 1359 279 0 0 0 chr5 101541949 101541980 -50995279 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1359 210 296 102 0 chr5 101543063 101543161 -50994098 + L2a LINE L2 3279 3386 -40 7 1359 279 301 78 65 chr5 101545463 101545666 -50991593 - MIRb SINE MIR -19 249 26 7 1359 746 92 36 12 chr5 101545980 101546146 -50991113 + (TCTA)n Simple_repeat Simple_repeat 3 172 0 7 1359 186 133 0 0 chr5 101546447 101546477 -50990782 + (A)n Simple_repeat Simple_repeat 1 30 0 8 1359 663 287 35 30 chr5 101548041 101548271 -50988988 - Lx8 LINE L1 -1071 6402 6172 8 1359 393 319 84 32 chr5 101549033 101549318 -50987941 + L1ME4a LINE L1 5637 5936 -188 8 1359 1859 320 58 54 chr5 101550912 101551625 -50985634 + Lx7 LINE L1 4497 5227 -653 8 1359 756 114 21 0 chr5 101551625 101551765 -50985494 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 8 1359 1859 309 59 35 chr5 101551765 101552457 -50984802 + Lx7 LINE L1 5228 5914 -1782 8 1359 1176 146 99 33 chr5 101552661 101552873 -50984386 - URR1A DNA MER1_type 0 226 1 8 1359 258 327 112 90 chr5 101555857 101556035 -50981224 + MIR3 SINE MIR 12 193 -15 8 1359 387 0 0 0 chr5 101556086 101556129 -50981130 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1359 1645 145 162 19 chr5 101556712 101556897 -50980362 - RMER17C LTR ERVK 0 410 203 8 1359 297 0 0 0 chr5 101556897 101556930 -50980329 + (GA)n Simple_repeat Simple_repeat 2 34 0 8 1359 1645 145 162 19 chr5 101556930 101557103 -50980156 - RMER17C LTR ERVK -208 202 1 8 1359 336 307 219 50 chr5 101557107 101557453 -50979806 + L2c LINE L2 2983 3386 -1 9 1359 249 159 0 0 chr5 101557730 101557774 -50979485 + (TTA)n Simple_repeat Simple_repeat 3 46 0 9 1359 638 318 72 6 chr5 101557817 101558284 -50978975 - L1MA5A LINE L1 -415 5882 5357 9 1359 600 120 0 0 chr5 101558392 101558492 -50978767 + (TC)n Simple_repeat Simple_repeat 2 101 0 9 1359 2746 97 0 0 chr5 101559486 101559856 -50977403 + Lx3B LINE L1 6380 6749 -224 9 1359 241 220 17 0 chr5 101560493 101560552 -50976707 - MLT1A0 LTR MaLR -10 355 296 9 1359 486 290 0 64 chr5 101560552 101560699 -50976560 + RSINE1 SINE B4 4 142 -23 9 1359 234 0 0 0 chr5 101560699 101560725 -50976534 + (TA)n Simple_repeat Simple_repeat 2 27 0 9 1359 486 290 0 64 chr5 101560725 101560750 -50976509 + RSINE1 SINE B4 143 165 0 9 1359 210 143 0 0 chr5 101560762 101560797 -50976462 + (TAA)n Simple_repeat Simple_repeat 1 35 0 9 1359 242 273 76 25 chr5 101560797 101560876 -50976383 - MLT1A0 LTR MaLR -52 313 231 9 1359 510 311 10 2 chr5 101561477 101561612 -50975647 + ID_B1 SINE B4 12 151 -141 9 1359 5928 38 0 0 chr5 101561811 101562472 -50974787 - L1Md_T LINE L1 0 6582 5922 1 1359 545 357 54 27 chr5 101562974 101563233 -50974026 + B4A SINE B4 5 270 -22 1 1359 369 58 0 0 chr5 101563272 101563324 -50973935 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1359 265 382 58 32 chr5 101564028 101564217 -50973042 - MIR SINE MIR -41 221 28 1 1359 306 0 0 0 chr5 101564336 101564370 -50972889 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1 1359 201 94 0 0 chr5 101564423 101564455 -50972804 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1359 189 307 25 51 chr5 101566096 101566175 -50971084 + MIRc SINE MIR 58 134 -134 1 1359 252 348 56 65 chr5 101566382 101566597 -50970662 + MIR SINE MIR 23 235 -27 1 1359 504 354 66 43 chr5 101566927 101567275 -50969984 - ORR1E LTR MaLR 0 359 4 1 1359 722 93 111 0 chr5 101567999 101568107 -50969152 + MTC LTR MaLR 1 120 -301 1 1359 7462 57 0 0 chr5 101568116 101569026 -50968233 - L1Md_T LINE L1 0 6582 5673 1 1359 1468 150 89 32 chr5 101569026 101569308 -50967951 + MTC LTR MaLR 124 421 0 1 1359 1440 194 36 73 chr5 101569308 101569916 -50967343 + MTC-int LTR MaLR 835 1254 -4 1 1359 2034 164 69 41 chr5 101569912 101570301 -50966958 + MTC LTR MaLR 7 406 -15 1 1359 294 292 63 94 chr5 101570648 101570807 -50966452 - MTEb LTR MaLR -221 158 5 1 1359 2665 89 30 3 chr5 101571581 101571953 -50965306 - Lx LINE L1 -1 6653 6272 1 1359 469 121 0 0 chr5 101571958 101572024 -50965235 + L1_Mus4 LINE L1 6217 6282 -354 1 1359 401 255 30 30 chr5 101574676 101574777 -50962482 - PB1D10 SINE Alu -9 108 8 1 1359 588 14 0 0 chr5 101575209 101575278 -50961981 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 1359 1359 251 41 8 chr5 101575428 101575793 -50961466 + MTE2b LTR MaLR 3 379 0 1 1359 243 220 175 29 chr5 101576938 101577041 -50960218 + L1M5 LINE L1 5344 5461 -663 1 1359 975 295 32 4 chr5 101577647 101577926 -50959333 + B4 SINE B4 2 288 -4 1 1359 468 62 0 0 chr5 101577936 101578000 -50959259 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1359 2120 198 15 5 chr5 101578175 101578572 -50958687 + MTC LTR MaLR 21 421 0 1 1359 6097 63 8 4 chr5 101578729 101579457 -50957802 - L1Md_F2 LINE L1 -12 6570 5840 1 169 779 119 0 8 chr5 101580748 101580875 -50956384 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 1 1360 1015 285 88 36 chr5 101581998 101582416 -50954843 - Lx8 LINE L1 -949 6524 6085 1 1360 1612 190 18 195 chr5 101582416 101582867 -50954392 + ORR1D1 LTR MaLR 1 371 -3 1 1360 23 54 0 0 chr5 101583053 101583090 -50954169 + AT_rich Low_complexity Low_complexity 1 37 0 1 1360 468 0 0 0 chr5 101583147 101583199 -50954060 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 1 1360 235 227 0 0 chr5 101583212 101583256 -50954003 - B1F1 SINE Alu -28 121 78 1 1360 1318 127 17 0 chr5 101583257 101583438 -50953821 - B2_Mm2 SINE B2 -10 185 2 1 1360 226 301 45 64 chr5 101583462 101583572 -50953687 - MER3 DNA MER1_type 0 209 102 1 1360 534 31 0 0 chr5 101583693 101583757 -50953502 + (TTCTC)n Simple_repeat Simple_repeat 4 67 0 1 1360 4558 97 14 0 chr5 101583759 101584378 -50952881 - Lx LINE L1 -440 6214 5587 1 1360 4514 149 30 5 chr5 101584381 101585138 -50952121 + Lx LINE L1 4798 5573 -310 1 1360 234 0 0 0 chr5 101585288 101585314 -50951945 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1360 1648 27 27 0 chr5 101585317 101585501 -50951758 - B2_Mm1a SINE B2 -3 190 2 1 1360 572 175 58 0 chr5 101586572 101586675 -50950584 - MER20 DNA MER1_type -58 161 53 1 1360 389 198 10 0 chr5 101587384 101587485 -50949774 + (TA)n Simple_repeat Simple_repeat 2 103 0 1 1360 2256 218 74 21 chr5 101587529 101587755 -50949504 - Lx5 LINE L1 -2 7048 6823 1 1360 711 0 0 0 chr5 101587755 101587834 -50949425 + (CAGG)n Simple_repeat Simple_repeat 4 82 0 1 1360 2256 218 74 21 chr5 101587834 101588122 -50949137 - Lx5 LINE L1 -228 6822 6507 1 1360 1028 143 14 0 chr5 101588194 101588341 -50948918 - B1_Mur2 SINE Alu 0 149 1 1 1360 891 151 0 21 chr5 101588618 101588760 -50948499 - B1_Mus2 SINE Alu 0 147 9 1 1360 495 289 12 60 chr5 101588760 101588781 -50948478 - ID_B1 SINE B4 0 221 67 1 1360 819 189 9 0 chr5 101588842 101589072 -50948187 + (TATG)n Simple_repeat Simple_repeat 1 232 0 1 1360 204 222 0 0 chr5 101589073 101589109 -50948150 + (CATA)n Simple_repeat Simple_repeat 2 37 0 1 1360 1068 141 3 8 chr5 101589109 101589466 -50947793 + (TATG)n Simple_repeat Simple_repeat 1 355 0 1 1360 232 203 29 14 chr5 101589464 101589520 -50947739 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 1 1360 997 140 11 0 chr5 101589520 101589698 -50947561 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1360 232 203 29 14 chr5 101589698 101589711 -50947548 + (TATATG)n Simple_repeat Simple_repeat 6 18 0 1 1360 455 301 86 62 chr5 101590108 101590352 -50946907 + ORR1E LTR MaLR 1 250 -109 1 1360 267 31 0 0 chr5 101591604 101591636 -50945623 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1 1360 192 307 137 38 chr5 101592676 101592812 -50944447 - MIR3 SINE MIR -106 162 10 1 1360 545 325 50 6 chr5 101593247 101593408 -50943851 + B3A SINE B2 1 168 -30 1 1360 190 310 84 15 chr5 101593619 101593750 -50943509 - L2a LINE L2 -61 3365 3226 1 1360 438 258 130 52 chr5 101595659 101595929 -50941330 - MER97c DNA MER1_type? -25 1065 775 1 1360 507 281 40 84 chr5 101596547 101596796 -50940463 - MER97c DNA MER1_type? -739 351 114 1 1360 279 54 0 0 chr5 101597370 101597407 -50939852 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1360 324 0 0 0 chr5 101599679 101599715 -50937544 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1 1360 311 325 103 0 chr5 101599864 101599981 -50937278 - B1F SINE Alu -5 144 16 1 1360 180 200 0 0 chr5 101605557 101605597 -50931662 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1360 926 168 0 11 chr5 101605727 101605908 -50931351 + CT-rich Low_complexity Low_complexity 2 180 0 1 1360 216 0 0 0 chr5 101605925 101605949 -50931310 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1360 539 333 19 77 chr5 101605949 101606157 -50931102 - B4 SINE B4 -84 208 13 1 1360 366 313 20 10 chr5 101606527 101606627 -50930632 - PB1D10 SINE Alu -16 101 1 1 1360 23 0 0 0 chr5 101607685 101607708 -50929551 + AT_rich Low_complexity Low_complexity 1 23 0 1 1360 450 0 0 0 chr5 101608915 101608965 -50928294 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1360 659 228 0 6 chr5 101610261 101610442 -50926817 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1360 185 318 9 0 chr5 101610468 101610575 -50926684 + (CA)n Simple_repeat Simple_repeat 1 108 0 1 1360 1345 110 11 11 chr5 101611516 101611700 -50925559 + B2_Mm1t SINE B2 1 184 -9 1 1360 906 307 10 112 chr5 101611701 101612200 -50925059 - Lx8 LINE L1 -7 7466 7019 1 1360 432 118 0 0 chr5 101612275 101612343 -50924916 + (TCCC)n Simple_repeat Simple_repeat 2 69 0 1 1360 768 77 0 0 chr5 101612343 101612447 -50924812 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 1 1360 485 186 0 10 chr5 101612447 101612550 -50924709 - Lx3A LINE L1 -13 6968 6867 1 1360 226 333 0 0 chr5 101612999 101613059 -50924200 - MER2 DNA MER2_type 0 345 286 1 1360 551 222 105 0 chr5 101613099 101613252 -50924007 - MER2 DNA MER2_type -154 191 23 1 1360 683 287 64 30 chr5 101613507 101613802 -50923457 + Lx9 LINE L1 7069 7373 -271 1 1360 324 0 0 0 chr5 101613805 101613841 -50923418 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1360 360 0 0 0 chr5 101614080 101614120 -50923139 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1360 188 345 12 0 chr5 101614356 101614440 -50922819 - MIRb SINE MIR -8 260 176 1 1360 1355 306 41 18 chr5 101615674 101616189 -50921070 + Lx8 LINE L1 6120 6646 -827 1 1360 414 248 107 8 chr5 101616188 101616310 -50920949 + Lx8 LINE L1 7185 7318 -155 1 1360 677 161 39 35 chr5 101616312 101616500 -50920759 - RMER17C LTR ERVK -247 163 1 1 1360 212 0 36 0 chr5 101617867 101617895 -50919364 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1 1360 1819 146 48 53 chr5 101617895 101618069 -50919190 + RMER17C LTR ERVK 11 187 -223 1 1360 843 86 0 0 chr5 101618069 101618186 -50919073 + (TTC)n Simple_repeat Simple_repeat 3 119 0 1 1360 1819 146 48 53 chr5 101618186 101618412 -50918847 + RMER17C LTR ERVK 188 410 0 1 1360 227 208 0 0 chr5 101618498 101618546 -50918713 - MLT1C LTR MaLR -343 124 77 1 1360 648 218 45 0 chr5 101618715 101618848 -50918411 + B1_Mur1 SINE Alu 3 141 -8 1 1360 374 245 98 58 chr5 101618908 101619081 -50918178 - MER3 DNA MER1_type -12 197 18 1 1360 3341 69 0 2 chr5 101619292 101619716 -50917543 - L1_Mm LINE L1 -209 5674 5252 1 1360 2724 53 6 0 chr5 101619716 101620053 -50917206 + L1_Mus1 LINE L1 6228 6566 -1 1 1360 281 290 121 61 chr5 101621235 101621400 -50915859 + MLT1I LTR MaLR 274 448 0 1 1360 709 254 30 63 chr5 101621763 101622097 -50915162 - L1MA4A LINE L1 -285 6015 5677 1 1360 337 205 22 33 chr5 101622276 101622367 -50914892 + (TG)n Simple_repeat Simple_repeat 1 90 0 1 1360 379 151 40 57 chr5 101622387 101622563 -50914696 + (TATATG)n Simple_repeat Simple_repeat 6 178 0 1 1360 208 159 26 61 chr5 101622582 101622696 -50914563 + (TATATG)n Simple_repeat Simple_repeat 2 111 0 1 1360 671 280 118 8 chr5 101622698 101622961 -50914298 - B4A SINE B4 0 292 1 1 1360 566 226 35 0 chr5 101623095 101623210 -50914049 + PB1D7 SINE Alu 2 120 0 1 1360 6063 57 13 1 chr5 101623496 101624241 -50913018 + L1Md_F2 LINE L1 5819 6572 -10 1 1360 1389 75 11 16 chr5 101624873 101625063 -50912196 + B2_Mm2 SINE B2 2 190 -5 1 1360 527 330 57 81 chr5 101625079 101625288 -50911971 + B4 SINE B4 2 199 -93 1 1360 402 39 0 0 chr5 101625288 101625340 -50911919 + (CCA)n Simple_repeat Simple_repeat 1 52 0 1 1360 527 330 57 81 chr5 101625340 101625427 -50911832 + B4 SINE B4 200 291 -1 1 1360 312 172 99 0 chr5 101625539 101625640 -50911619 - PB1D9 SINE Alu -2 118 8 1 1360 266 247 79 0 chr5 101625674 101625763 -50911496 + MIR SINE MIR 73 168 -94 1 1360 357 24 0 0 chr5 101626156 101626198 -50911061 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1360 450 53 0 0 chr5 101626538 101626595 -50910664 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1360 289 385 66 22 chr5 101629360 101629586 -50907673 + LTR33 LTR ERVL 45 280 -235 1 1360 789 194 0 0 chr5 101630272 101630442 -50906817 + (TG)n Simple_repeat Simple_repeat 1 170 0 1 1360 240 311 57 0 chr5 101631183 101631289 -50905970 - MIR3 SINE MIR -28 180 69 2 1360 530 296 20 20 chr5 101631631 101631779 -50905480 + B1_Mur1 SINE Alu 1 148 -1 2 1360 228 67 0 0 chr5 101631794 101631824 -50905435 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 2 1360 24 0 0 0 chr5 101633042 101633066 -50904193 + AT_rich Low_complexity Low_complexity 1 24 0 2 1360 2015 145 81 26 chr5 101633185 101633532 -50903727 + ORR1B2 LTR MaLR 1 366 -1 2 1360 10987 78 20 4 chr5 101633532 101635692 -50901567 + L1VL4 LINE L1 195 2391 -1168 2 1360 230 81 0 26 chr5 101635775 101635813 -50901446 + (GGAAA)n Simple_repeat Simple_repeat 2 38 0 2 1360 225 0 0 0 chr5 101637952 101637977 -50899282 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1360 793 278 139 24 chr5 101638162 101638494 -50898765 - Lx8 LINE L1 -2 7471 7102 2 1360 566 303 6 22 chr5 101638747 101638926 -50898333 + ID_B1 SINE B4 16 191 -33 2 1360 1278 6 35 0 chr5 101639015 101639186 -50898073 + (CTGTG)n Simple_repeat Simple_repeat 3 179 0 2 1360 1326 17 39 5 chr5 101639201 101639974 -50897285 + (CTGTG)n Simple_repeat Simple_repeat 1 798 0 2 1360 195 129 0 0 chr5 101640823 101640854 -50896405 + (TAA)n Simple_repeat Simple_repeat 3 33 0 2 1360 1716 162 110 81 chr5 101640859 101641268 -50895991 + MTC LTR MaLR 1 421 0 2 1360 4390 211 106 11 chr5 101641268 101642402 -50894857 + MTC-int LTR MaLR 1 1241 -17 2 1360 1686 184 150 62 chr5 101642414 101642801 -50894458 + MTC LTR MaLR 1 421 0 2 1360 342 247 148 20 chr5 101642940 101643089 -50894170 + Lx4B LINE L1 6887 7054 -4 2 1360 380 111 0 16 chr5 101644286 101644350 -50892909 + (CAT)n Simple_repeat Simple_repeat 3 65 0 2 1360 396 0 0 0 chr5 101644916 101644960 -50892299 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1360 2312 185 131 8 chr5 101645454 101645929 -50891330 - MT2A LTR ERVL 0 533 1 2 1360 224 59 29 0 chr5 101646544 101646578 -50890681 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1360 213 119 0 0 chr5 101646679 101646721 -50890538 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1360 215 305 0 0 chr5 101646723 101646782 -50890477 - ID4_ SINE ID -23 60 2 2 1360 351 302 14 14 chr5 101646782 101646923 -50890336 - ID_B1 SINE B4 -1 223 83 2 1360 302 304 50 35 chr5 101646939 101647137 -50890122 - L1M5 LINE L1 -1290 4856 4656 2 1360 1359 95 21 0 chr5 101647195 101647384 -50889875 + B2_Mm2 SINE B2 3 195 0 2 1360 8622 85 3 12 chr5 101647385 101648587 -50888672 - Lx3_Mus LINE L1 -347 5539 4348 2 1360 5741 69 57 15 chr5 101648582 101649482 -50887777 + Lx3_Mus LINE L1 5509 6425 -584 2 1360 2470 91 39 22 chr5 101649485 101649892 -50887367 + RLTR44E LTR ERVK 1 414 -38 2 1360 4341 75 12 7 chr5 101649918 101650497 -50886762 + Lx3_Mus LINE L1 6428 7009 0 2 1360 294 29 0 0 chr5 101652033 101652068 -50885191 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1360 22 0 0 0 chr5 101652216 101652238 -50885021 + AT_rich Low_complexity Low_complexity 1 22 0 2 1360 1149 224 145 22 chr5 101652535 101652859 -50884400 - MTEb LTR MaLR -8 371 8 2 1360 3128 278 107 17 chr5 101652861 101653978 -50883281 - MTEb-int LTR MaLR -2 1578 361 2 1360 1186 38 19 0 chr5 101653989 101654148 -50883111 + (TCTA)n Simple_repeat Simple_repeat 1 162 0 2 1360 391 332 90 44 chr5 101654148 101654560 -50882699 - Lx8 LINE L1 -1237 6236 5806 2 1360 1194 235 67 22 chr5 101654596 101654957 -50882302 + L1_Mur3 LINE L1 2034 2410 -3470 2 1360 279 0 0 0 chr5 101654960 101654991 -50882268 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1360 297 297 63 19 chr5 101654992 101655150 -50882109 + L1_Mur3 LINE L1 2539 2703 -3177 2 1360 1182 285 3 31 chr5 101655151 101655506 -50881753 - MTEb-int LTR MaLR -1235 345 1 2 1360 872 305 57 49 chr5 101655510 101655876 -50881383 - MTEb LTR MaLR -8 371 3 2 1360 488 301 60 10 chr5 101656366 101656567 -50880692 - Lx8 LINE L1 -341 7132 6922 2 1360 289 221 16 16 chr5 101658283 101658407 -50878852 + (CATATA)n Simple_repeat Simple_repeat 5 128 0 2 1360 211 345 68 11 chr5 101659504 101659592 -50877667 - MER5B DNA MER1_type -6 172 80 2 1360 1407 209 158 82 chr5 101659736 101660185 -50877074 + RMER19C LTR ERVK 1 483 -128 2 1360 8619 27 0 0 chr5 101660186 101661249 -50876010 - L1Md_A LINE L1 0 6582 5520 2 1360 742 171 14 21 chr5 101661264 101661407 -50875852 + RMER19C LTR ERVK 469 610 -1 2 1360 383 282 65 20 chr5 101661503 101661702 -50875557 - L1ME1 LINE L1 -200 5979 5772 2 1360 712 244 70 9 chr5 101661736 101661951 -50875308 - L1ME1 LINE L1 -504 5675 5448 2 1360 338 309 8 38 chr5 101662369 101662500 -50874759 + MIR SINE MIR 3 129 -133 2 1360 270 0 0 0 chr5 101662734 101662764 -50874495 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 2 1360 214 192 9 55 chr5 101663810 101663920 -50873339 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 1360 202 206 42 56 chr5 101663938 101664010 -50873249 + (TATG)n Simple_repeat Simple_repeat 1 71 0 2 1360 417 218 6 29 chr5 101664015 101664185 -50873074 + (TG)n Simple_repeat Simple_repeat 1 166 0 2 1360 919 273 78 4 chr5 101664241 101664509 -50872750 - B4A SINE B4 0 292 5 2 1360 333 0 0 0 chr5 101664912 101664949 -50872310 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1360 216 259 35 58 chr5 101665559 101665645 -50871614 + MamSINE1 SINE tRNA 6 89 -201 2 1360 537 16 0 0 chr5 101666393 101666455 -50870804 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1360 557 128 46 0 chr5 101666626 101666735 -50870524 + Lx5 LINE L1 6932 7045 -5 2 1360 1390 224 105 50 chr5 101667887 101668362 -50868897 + RLTR20B3 LTR ERVK 21 521 -56 2 1360 285 282 0 0 chr5 101669310 101669388 -50867871 + ID2 SINE ID 2 79 -4 2 1360 966 112 111 17 chr5 101672244 101672416 -50864843 + B2_Mm2 SINE B2 2 189 -6 2 1360 622 171 27 20 chr5 101673835 101673984 -50863275 - MER104 DNA Tc2 0 181 32 2 1360 807 136 0 0 chr5 101675991 101676138 -50861121 + (TC)n Simple_repeat Simple_repeat 2 148 0 2 1360 635 290 35 133 chr5 101676398 101676804 -50860455 - MTE2a LTR MaLR -1 378 13 2 1360 240 35 0 0 chr5 101677484 101677513 -50859746 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 1360 234 0 0 0 chr5 101677513 101677538 -50859721 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1360 24 53 0 0 chr5 101677974 101678012 -50859247 + AT_rich Low_complexity Low_complexity 1 38 0 2 1360 189 0 0 0 chr5 101678115 101678136 -50859123 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2 1360 309 249 128 61 chr5 101679118 101679298 -50857961 + L1MEf LINE L1 1142 1333 -4909 2 1360 745 243 40 0 chr5 101680373 101680546 -50856713 + B3 SINE B2 37 216 0 2 1360 987 236 34 0 chr5 101680554 101680762 -50856497 + B3 SINE B2 2 216 0 2 1360 334 315 83 44 chr5 101680790 101681019 -50856240 + L1MEf LINE L1 3950 4187 -1959 2 1360 240 250 0 43 chr5 101681025 101681117 -50856142 + Lx4B LINE L1 6971 7058 0 2 1360 255 328 45 11 chr5 101681202 101681381 -50855878 + L1M5 LINE L1 4241 4425 -1721 2 1360 2210 146 69 21 chr5 101681393 101681827 -50855432 + RMER6B LTR ERVK 1 455 -6 2 1360 1959 223 103 64 chr5 101681949 101682542 -50854717 + Lx6 LINE L1 6844 7459 -1 2 1360 1430 209 42 42 chr5 101682906 101683310 -50853949 + MTD LTR MaLR 1 404 -15 2 1360 399 297 60 20 chr5 101683345 101683755 -50853504 + L1M5 LINE L1 5016 5442 -722 2 1360 1119 291 20 25 chr5 101683746 101684099 -50853160 + Lx8 LINE L1 6875 7225 -248 2 1360 300 327 44 0 chr5 101684361 101684474 -50852785 + L1M5 LINE L1 5531 5648 -531 2 1360 33593 61 9 2 chr5 101684659 101689275 -50847984 + L1Md_F2 LINE L1 939 5586 -297 2 1360 8056 61 0 2 chr5 101689276 101690258 -50847001 + L1Md_F2 LINE L1 5588 6567 -15 2 1360 1518 186 178 20 chr5 101690272 101690672 -50846587 - RMER19B LTR ERVK -132 770 308 2 1360 489 279 105 0 chr5 101690703 101690875 -50846384 - MTEa LTR MaLR -7 372 183 2 1360 367 288 9 18 chr5 101690895 101691008 -50846251 - MTEa LTR MaLR -253 126 15 2 1360 1063 49 0 7 chr5 101691154 101691298 -50845961 + B1_Mus1 SINE Alu 6 148 0 2 1360 2347 82 31 3 chr5 101691959 101692276 -50844983 + ORR1A2 LTR MaLR 2 327 0 2 1360 245 268 147 58 chr5 101692395 101692585 -50844674 - L2 LINE L2 -985 2434 2228 2 1360 23 0 0 0 chr5 101694271 101694294 -50842965 + AT_rich Low_complexity Low_complexity 1 23 0 2 1360 889 224 45 5 chr5 101694338 101694540 -50842719 - B3 SINE B2 -6 210 1 2 1360 249 309 20 50 chr5 101694940 101695039 -50842220 + MER81 DNA AcHobo 18 113 -1 2 1360 258 319 34 50 chr5 101695148 101695267 -50841992 + MLT1J LTR MaLR 52 168 -344 2 1360 330 26 0 0 chr5 101695423 101695462 -50841797 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1360 222 226 113 0 chr5 101696063 101696125 -50841134 + ID_B1 SINE B4 86 154 -70 2 1360 764 202 12 24 chr5 101696132 101696299 -50840960 + B3 SINE B2 1 165 -51 2 1360 206 105 26 0 chr5 101696299 101696337 -50840922 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1360 243 0 0 0 chr5 101696337 101696363 -50840896 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 1360 329 311 52 29 chr5 101696492 101696628 -50840631 + MLT1A0 LTR MaLR 4 142 -223 2 1360 566 230 69 35 chr5 101697280 101697424 -50839835 - B1_Mur2 SINE Alu 0 149 1 2 1360 467 45 15 0 chr5 101697491 101697557 -50839702 + (TA)n Simple_repeat Simple_repeat 2 68 0 2 1360 6770 104 52 6 chr5 101698001 101699048 -50838211 + Lx3C LINE L1 5880 6975 -1 2 1360 487 343 46 13 chr5 101700060 101700364 -50836895 - L1M2 LINE L1 -3170 2973 2660 2 1360 252 280 95 34 chr5 101700738 101700886 -50836373 - L1MB5 LINE L1 -17 6157 6001 2 1360 1215 234 94 27 chr5 101701102 101701216 -50836043 + MTD LTR MaLR 13 140 -279 2 1360 1937 99 28 28 chr5 101701216 101701538 -50835721 - RLTRETN_Mm LTR ERVK 0 322 1 2 1360 1215 234 94 27 chr5 101701538 101701797 -50835462 + MTD LTR MaLR 141 411 -8 2 1360 219 202 0 0 chr5 101702526 101702605 -50834654 + CT-rich Low_complexity Low_complexity 1 79 0 2 1360 3906 33 2 0 chr5 101703468 101703925 -50833334 + L1Md_F2 LINE L1 6112 6569 -13 2 1360 24033 62 1 1 chr5 101704268 101708021 -50829238 - L1Md_F2 LINE L1 -2 6580 2830 2 1360 861 136 0 0 chr5 101708333 101708473 -50828786 + (TTTCC)n Simple_repeat Simple_repeat 1 140 0 2 1360 211 33 0 62 chr5 101708477 101708509 -50828750 + (TCCCC)n Simple_repeat Simple_repeat 5 34 0 2 1360 247 164 16 16 chr5 101708517 101708579 -50828680 + CT-rich Low_complexity Low_complexity 2 63 0 2 1360 459 0 0 0 chr5 101709782 101709833 -50827426 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1360 360 263 391 50 chr5 101711131 101711420 -50825839 + L1MA9 LINE L1 5904 6290 -1 2 21 1078 227 48 96 chr5 101711632 101711987 -50825272 - MTE2a LTR MaLR -41 338 1 2 1361 2233 110 3 9 chr5 101713850 101714179 -50823080 - ORR1A2 LTR MaLR 0 327 1 2 1361 187 79 53 0 chr5 101714586 101714624 -50822635 + (CAAAAA)n Simple_repeat Simple_repeat 1 40 0 3 1361 198 347 28 56 chr5 101715461 101715641 -50821618 - MIRc SINE MIR 0 268 94 3 1361 239 222 220 11 chr5 101716463 101716554 -50820705 + MLT1B LTR MaLR 6 115 -275 3 1361 40 37 0 0 chr5 101716563 101716617 -50820642 + AT_rich Low_complexity Low_complexity 1 54 0 3 1361 339 25 0 0 chr5 101716656 101716696 -50820563 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1361 512 231 81 24 chr5 101716701 101716825 -50820434 - B1_Mur1 SINE Alu -10 139 9 3 1361 595 275 0 61 chr5 101718087 101718234 -50819025 + RSINE1 SINE B4 3 140 -25 3 1361 772 228 104 16 chr5 101718791 101718983 -50818276 - B3 SINE B2 -3 213 5 3 1361 914 183 141 5 chr5 101718985 101719183 -50818076 + URR1B DNA MER1_type 1 225 0 3 1361 23 33 0 0 chr5 101719222 101719252 -50818007 + AT_rich Low_complexity Low_complexity 1 30 0 3 1361 203 304 43 0 chr5 101719800 101719869 -50817390 - MIR3 SINE MIR -32 176 105 3 1361 24 0 0 0 chr5 101720356 101720380 -50816879 + AT_rich Low_complexity Low_complexity 1 24 0 3 1361 672 48 0 0 chr5 101721769 101721853 -50815406 + (TTC)n Simple_repeat Simple_repeat 2 85 0 3 1361 4040 134 16 6 chr5 101721866 101722496 -50814763 - Lx LINE L1 -5 6649 6014 3 1361 456 72 0 0 chr5 101723194 101723263 -50813996 + (CCTG)n Simple_repeat Simple_repeat 1 69 0 3 1361 1126 111 42 0 chr5 101723544 101723733 -50813526 - RLTR11A LTR ERVK -2 526 330 3 1361 1648 176 40 29 chr5 101723817 101724163 -50813096 - RLTR11A LTR ERVK -178 350 1 3 1361 288 304 12 37 chr5 101724380 101724545 -50812714 + GA-rich Low_complexity Low_complexity 1 160 0 3 1361 329 275 20 0 chr5 101725556 101725664 -50811595 + ID4 SINE ID 2 115 -37 3 1361 205 156 0 0 chr5 101725668 101725700 -50811559 + G-rich Low_complexity Low_complexity 1 32 0 3 1361 343 257 88 20 chr5 101725713 101725860 -50811399 - MER3 DNA MER1_type -48 161 5 3 1361 21 0 0 0 chr5 101726477 101726498 -50810761 + AT_rich Low_complexity Low_complexity 1 21 0 3 1361 565 167 192 0 chr5 101728037 101728157 -50809102 - B1_Mus1 SINE Alu -1 147 5 3 1361 549 240 145 94 chr5 101728160 101728296 -50808963 - RMER10A LTR ERVL -51 391 272 3 1361 1152 60 0 0 chr5 101728296 101728445 -50808814 + (GGAGA)n Simple_repeat Simple_repeat 2 150 0 3 1361 549 240 145 94 chr5 101728445 101728680 -50808579 - RMER10A LTR ERVL -171 271 1 3 1361 387 0 0 0 chr5 101728681 101728724 -50808535 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1361 568 111 20 0 chr5 101728780 101728879 -50808380 + (TC)n Simple_repeat Simple_repeat 2 102 0 3 1361 235 379 98 79 chr5 101729001 101729379 -50807880 + L4 LINE RTE 950 1334 -695 3 1361 382 308 10 0 chr5 101729648 101729752 -50807507 - PB1D10 SINE Alu -12 105 1 3 1361 522 302 90 0 chr5 101729783 101729972 -50807287 + ID_B1 SINE B4 6 211 -13 3 1361 190 296 91 36 chr5 101729995 101730103 -50807156 + L2 LINE L2 2807 2921 -498 3 1361 606 28 0 0 chr5 101730103 101730175 -50807084 + (TC)n Simple_repeat Simple_repeat 2 73 0 3 1361 190 296 91 36 chr5 101730175 101730231 -50807028 + L2 LINE L2 2922 2980 -439 3 1361 903 320 117 36 chr5 101731767 101732315 -50804944 - MLT1J-int LTR MaLR -260 1127 536 3 1361 30 0 0 0 chr5 101733604 101733634 -50803625 + AT_rich Low_complexity Low_complexity 1 30 0 3 1361 878 128 11 11 chr5 101733815 101733989 -50803270 + (TCTA)n Simple_repeat Simple_repeat 3 176 0 3 1361 576 133 16 8 chr5 101733989 101734110 -50803149 + (TA)n Simple_repeat Simple_repeat 2 123 0 3 1361 1225 84 0 6 chr5 101734361 101734529 -50802730 + L1_Mus3 LINE L1 5847 6013 -625 3 1361 4671 87 5 6 chr5 101735059 101735695 -50801564 + L1_Mus3 LINE L1 5998 6632 -6 3 1361 202 346 0 0 chr5 101735826 101735904 -50801355 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1361 189 171 24 24 chr5 101736687 101736771 -50800488 + (TCTG)n Simple_repeat Simple_repeat 1 84 0 3 1361 549 68 0 0 chr5 101736822 101736896 -50800363 + (TC)n Simple_repeat Simple_repeat 1 74 0 3 1361 200 86 0 28 chr5 101736910 101736946 -50800313 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 3 1361 228 250 122 18 chr5 101736946 101737034 -50800225 - B1F SINE Alu -5 112 19 3 1361 989 246 12 109 chr5 101737883 101738203 -50799056 + B4A SINE B4 4 292 0 3 1361 950 191 136 14 chr5 101739084 101739311 -50797948 + Lx9 LINE L1 5495 5734 -113 3 1361 869 249 21 8 chr5 101739312 101739592 -50797667 - RMER19A LTR ERVK -1 736 357 3 1361 669 67 29 0 chr5 101739662 101739766 -50797493 + (GA)n Simple_repeat Simple_repeat 1 107 0 3 1361 1314 261 81 11 chr5 101739835 101739950 -50797309 - RMER19A LTR ERVK -352 385 265 3 1361 396 0 0 0 chr5 101739950 101739994 -50797265 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1361 1314 261 81 11 chr5 101739994 101740067 -50797192 - RMER19A LTR ERVK -473 264 174 3 1361 408 55 0 0 chr5 101740067 101740122 -50797137 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1361 207 100 0 0 chr5 101740122 101740152 -50797107 + (TATATG)n Simple_repeat Simple_repeat 2 31 0 3 1361 1314 261 81 11 chr5 101740152 101740321 -50796938 - RMER19A LTR ERVK -564 173 4 3 1361 3805 215 195 10 chr5 101740322 101741362 -50795897 + Lx9 LINE L1 5765 6997 -647 3 1361 36281 46 0 3 chr5 101741363 101746836 -50790423 + L1Md_T LINE L1 38 5589 -297 3 1361 8692 29 0 0 chr5 101746836 101747832 -50789427 + L1Md_T LINE L1 5590 6585 0 3 1361 2163 225 115 13 chr5 101747837 101748295 -50788964 + Lx9 LINE L1 6985 7480 -164 3 1361 229 51 25 25 chr5 101748295 101748335 -50788924 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 1361 2163 225 115 13 chr5 101748335 101748474 -50788785 + Lx9 LINE L1 7481 7642 -2 3 1361 495 0 0 0 chr5 101748751 101748806 -50788453 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1361 186 133 0 0 chr5 101750091 101750121 -50787138 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1361 221 284 34 76 chr5 101750724 101750842 -50786417 - MIRc SINE MIR -58 210 98 3 1361 764 169 6 0 chr5 101751316 101751494 -50785765 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 3 1361 468 0 0 0 chr5 101751512 101751564 -50785695 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1361 216 207 0 49 chr5 101752025 101752086 -50785173 + A-rich Low_complexity Low_complexity 5 62 0 3 1361 26 0 0 0 chr5 101753543 101753569 -50783690 + AT_rich Low_complexity Low_complexity 1 26 0 3 1361 306 177 16 0 chr5 101755447 101755509 -50781750 - L1MA5 LINE L1 -130 6170 6108 3 1361 633 233 127 9 chr5 101755620 101755849 -50781410 - L1MA5 LINE L1 -379 5921 5666 3 1361 419 191 142 48 chr5 101757018 101757151 -50780108 - B3 SINE B2 -6 210 80 3 1361 290 67 22 0 chr5 101757488 101757533 -50779726 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 3 1361 359 68 0 17 chr5 101760674 101760734 -50776525 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 3 1361 23 0 0 0 chr5 101762226 101762249 -50775010 + AT_rich Low_complexity Low_complexity 1 23 0 3 1361 2124 69 18 7 chr5 101763042 101763362 -50773897 + ORR1A2 LTR MaLR 1 363 -11 3 1361 8420 48 3 1 chr5 101763772 101765502 -50771757 - L1Md_F3 LINE L1 -6 6578 4845 3 1361 225 185 93 0 chr5 101766361 101766415 -50770844 + LTR85a LTR Gypsy? 523 581 -121 3 1361 5691 67 8 0 chr5 101766481 101767198 -50770061 + L1_Mus2 LINE L1 5842 6564 -2 3 1361 5317 89 48 4 chr5 101767959 101768722 -50768537 - Lx3C LINE L1 -2 6974 6178 3 1361 2037 71 4 4 chr5 101769020 101769290 -50767969 - L1Md_F2 LINE L1 -3 6579 6310 3 1361 3418 38 2 0 chr5 101769290 101769685 -50767574 - MTA_Mm LTR MaLR 0 396 1 3 1361 431 294 42 24 chr5 101769886 101770053 -50767206 - B3 SINE B2 0 216 47 3 1361 740 106 18 24 chr5 101770357 101770522 -50766737 + (TA)n Simple_repeat Simple_repeat 1 164 0 3 1361 4139 2 0 0 chr5 101770682 101771131 -50766128 + L1Md_A LINE L1 6134 6582 0 3 1361 7410 178 51 65 chr5 101771540 101773462 -50763797 - RMER3D-int LTR ERVK -140 2702 287 3 1361 1560 131 216 3 chr5 101773462 101773651 -50763608 - RMER17C LTR ERVK 0 410 179 3 1361 540 45 0 0 chr5 101773651 101773718 -50763541 + (GA)n Simple_repeat Simple_repeat 2 68 0 3 1361 1560 131 216 3 chr5 101773718 101773866 -50763393 - RMER17C LTR ERVK -232 178 3 3 1361 2054 190 81 58 chr5 101773866 101774131 -50763128 - RMER3D-int LTR ERVK -2556 286 10 3 1361 1697 204 144 44 chr5 101774194 101774713 -50762546 - RLTR17 LTR ERVK -121 571 1 3 1361 449 170 36 0 chr5 101774737 101774849 -50762410 + CT-rich Low_complexity Low_complexity 2 117 0 3 1361 28 71 0 0 chr5 101774893 101774949 -50762310 + AT_rich Low_complexity Low_complexity 1 56 0 3 1361 201 74 0 0 chr5 101774982 101775009 -50762250 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1361 8069 82 11 2 chr5 101775123 101776600 -50760659 - L1_Mus3 LINE L1 -3 6635 5146 3 1361 611 261 48 11 chr5 101776600 101776786 -50760473 - MTD LTR MaLR -209 210 18 3 1361 285 300 12 24 chr5 101776884 101776966 -50760293 + B4A SINE B4 6 86 -206 3 1361 2339 86 17 0 chr5 101776961 101777309 -50759950 - RMER17A LTR ERVK -397 354 1 3 1361 296 222 33 100 chr5 101777527 101777647 -50759612 + RMER15 LTR ERVL 15 126 -449 3 1361 690 260 107 28 chr5 101777688 101777941 -50759318 + RMER15 LTR ERVL 294 566 -9 3 1361 979 92 7 7 chr5 101780763 101780905 -50756354 - B1_Mus1 SINE Alu -2 146 5 3 1361 1117 208 7 66 chr5 101781146 101781419 -50755840 - ORR1D-int LTR MaLR -133 1237 981 3 1361 569 251 113 11 chr5 101781546 101781731 -50755528 + ORR1D2 LTR MaLR 155 358 -12 3 1361 690 250 62 0 chr5 101781744 101781920 -50755339 - L1_Mur3 LINE L1 -1729 4151 3965 3 1361 204 214 0 0 chr5 101781955 101781997 -50755262 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1361 436 327 6 53 chr5 101781997 101782168 -50755091 - RSINE1 SINE B4 0 165 3 3 1361 461 274 19 0 chr5 101782393 101782499 -50754760 + Lx8 LINE L1 6216 6323 -1150 3 1361 288 0 0 0 chr5 101782983 101783015 -50754244 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1361 1209 41 14 0 chr5 101784273 101784418 -50752841 + B1_Mm SINE Alu 1 147 0 3 1361 777 164 0 0 chr5 101784428 101784587 -50752672 + GA-rich Low_complexity Low_complexity 2 160 0 3 1361 446 257 73 0 chr5 101788006 101788115 -50749144 - PB1D9 SINE Alu -3 117 1 3 1361 324 0 0 0 chr5 101788759 101788795 -50748464 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1361 337 331 46 57 chr5 101790597 101790860 -50746399 + B4A SINE B4 3 262 -30 3 1361 243 0 0 0 chr5 101790870 101790897 -50746362 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1361 389 287 207 28 chr5 101790964 101791215 -50746044 - L1MA4A LINE L1 -375 5928 5633 3 1361 441 0 0 0 chr5 101791242 101791291 -50745968 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1361 4566 80 85 3 chr5 101792165 101792815 -50744444 + L1_Mus3 LINE L1 5930 6632 -6 4 1361 44 63 0 0 chr5 101792840 101792919 -50744340 + AT_rich Low_complexity Low_complexity 1 79 0 4 1361 977 207 24 19 chr5 101792922 101793129 -50744130 - B3 SINE B2 -8 208 1 4 1361 243 196 52 15 chr5 101793906 101794041 -50743218 + CT-rich Low_complexity Low_complexity 1 140 0 4 1361 289 263 0 50 chr5 101794043 101794123 -50743136 + C-rich Low_complexity Low_complexity 5 80 0 4 1361 24 0 0 0 chr5 101795370 101795394 -50741865 + GC_rich Low_complexity Low_complexity 1 24 0 4 1361 190 169 33 17 chr5 101796478 101796538 -50740721 + C-rich Low_complexity Low_complexity 4 64 0 4 1361 983 75 0 0 chr5 101798120 101798254 -50739005 - B1_Mm SINE Alu 0 147 14 4 1361 642 338 27 45 chr5 101799605 101799924 -50737335 + MLT2B1 LTR ERVL 218 507 -8 4 1361 768 239 33 48 chr5 101800188 101800490 -50736769 + MLT1B LTR MaLR 5 300 -167 4 1361 1301 112 0 6 chr5 101802748 101802928 -50734331 - B2_Mm2 SINE B2 -16 179 1 4 1361 1608 288 112 16 chr5 101803140 101803836 -50733423 + Lx8 LINE L1 6709 7471 -2 4 1361 528 335 100 11 chr5 101804478 101804738 -50732521 + B4A SINE B4 3 285 -7 4 1361 210 174 0 0 chr5 101804799 101804845 -50732414 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1361 213 39 0 0 chr5 101806222 101806248 -50731011 + (CAA)n Simple_repeat Simple_repeat 3 28 0 4 1361 674 348 52 25 chr5 101806676 101807118 -50730141 + Lx8 LINE L1 6961 7414 -59 4 1361 737 272 2 11 chr5 101807129 101807319 -50729940 + B3 SINE B2 1 192 -6 4 1361 728 210 0 6 chr5 101808235 101808403 -50728856 + CT-rich Low_complexity Low_complexity 3 169 0 4 1361 180 0 0 0 chr5 101808485 101808505 -50728754 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4 1361 1349 192 102 45 chr5 101808766 101809120 -50728139 - ORR1D1 LTR MaLR 0 374 1 4 1361 338 298 16 32 chr5 101809519 101809644 -50727615 + MIRb SINE MIR 105 227 -41 4 1361 501 281 8 8 chr5 101811270 101811392 -50725867 + ID_B1 SINE B4 100 221 -3 4 1361 231 312 22 52 chr5 101811721 101811856 -50725403 + L1MA7 LINE L1 6159 6289 -2 4 1361 4258 57 2 4 chr5 101813918 101814443 -50722816 - L1_Mus1 LINE L1 0 6567 6044 4 1361 4152 45 20 0 chr5 101814578 101815084 -50722175 - L1Md_F2 LINE L1 -12 6570 6055 4 1361 720 256 115 10 chr5 101815595 101815896 -50721363 + L1MA4 LINE L1 5593 5893 -1580 4 1361 752 226 10 64 chr5 101816063 101816266 -50720993 - B3A SINE B2 -5 193 2 4 1361 1053 281 122 28 chr5 101816661 101817291 -50719968 - L1MC3 LINE L1 -224 7771 6873 4 1361 272 362 59 0 chr5 101817800 101817952 -50719307 - L1MC3 LINE L1 -1052 6733 6573 4 1361 27 96 0 0 chr5 101818086 101818169 -50719090 + AT_rich Low_complexity Low_complexity 1 83 0 4 1361 2619 279 27 34 chr5 101818184 101818971 -50718288 - Lx8 LINE L1 -5 7468 6688 4 1361 601 276 47 12 chr5 101818941 101819113 -50718146 - Lx8 LINE L1 -1079 6394 6217 4 1361 328 219 0 0 chr5 101819633 101819706 -50717553 + MLT1G3 LTR MaLR 499 571 -24 4 1361 331 356 34 14 chr5 101819731 101819879 -50717380 - LTR16C LTR ERVL -14 475 325 4 1361 202 0 91 0 chr5 101820260 101820293 -50716966 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 4 1361 551 219 7 0 chr5 101820377 101820514 -50716745 + GA-rich Low_complexity Low_complexity 3 140 0 4 1361 985 32 0 48 chr5 101820542 101820708 -50716551 + (GAA)n Simple_repeat Simple_repeat 3 160 0 4 1361 186 71 0 0 chr5 101822572 101822600 -50714659 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1361 230 355 84 0 chr5 101822626 101822733 -50714526 + MLT1A1 LTR MaLR 3 118 -290 4 1361 563 294 8 99 chr5 101822895 101822964 -50714295 - MTEa LTR MaLR -157 222 167 4 1361 1088 177 108 0 chr5 101822964 101823167 -50714092 - URR1B DNA MER1_type 0 225 1 4 1361 563 294 8 99 chr5 101823167 101823339 -50713920 - MTEa LTR MaLR -213 166 3 4 1361 275 231 91 18 chr5 101823365 101823475 -50713784 + MamRep434 DNA TcMar 49 166 -260 4 1361 558 222 43 0 chr5 101824206 101824323 -50712936 - B1_Mur1 SINE Alu -18 131 10 4 1361 253 347 110 7 chr5 101824224 101824369 -50712890 - B4 SINE B4 -90 202 43 4 1361 3466 121 31 5 chr5 101824661 101825244 -50712015 + ORR1A2-int LTR MaLR 950 1547 -416 4 1361 4490 67 7 14 chr5 101825244 101825823 -50711436 + L1_Mus1 LINE L1 5991 6565 -2 4 1361 1033 120 0 0 chr5 101825863 101826005 -50711254 + B1_Mus1 SINE Alu 2 143 -5 4 1361 797 173 0 6 chr5 101826016 101826173 -50711086 + GA-rich Low_complexity Low_complexity 4 159 0 4 1361 252 139 0 0 chr5 101826174 101826210 -50711049 + (GGA)n Simple_repeat Simple_repeat 3 38 0 4 1361 2002 130 51 6 chr5 101826210 101826576 -50710683 + ORR1A2-int LTR MaLR 1207 1887 -76 4 1361 1909 92 11 0 chr5 101826576 101826849 -50710410 + ORR1A2 LTR MaLR 1 276 -51 4 1361 244 268 28 0 chr5 101827042 101827113 -50710146 - ID_B1 SINE B4 -29 195 123 4 1361 235 0 0 160 chr5 101827116 101827235 -50710024 + (CTCTG)n Simple_repeat Simple_repeat 1 100 0 4 1361 403 291 55 8 chr5 101827235 101827363 -50709896 - ID_B1 SINE B4 -77 147 14 4 1361 36238 69 7 7 chr5 101828167 101834417 -50702842 - L1Md_F3 LINE L1 0 6584 339 4 1361 1785 242 18 8 chr5 101835144 101835540 -50701719 - Lx7 LINE L1 -679 7017 6618 4 1361 4086 83 44 0 chr5 101835540 101836103 -50701156 + L1_Mus3 LINE L1 6047 6634 -4 4 1361 264 250 0 0 chr5 101836126 101836186 -50701073 - RLTR24 LTR ERV1 0 529 470 4 1361 536 350 78 35 chr5 101837121 101837518 -50699741 + MLT1H LTR MaLR 16 478 -71 4 1361 260 277 0 0 chr5 101837733 101837798 -50699461 - MTE-int LTR MaLR -320 1260 1196 4 1361 1702 322 142 37 chr5 101837814 101838914 -50698345 - MTE-int LTR MaLR -361 1219 5 4 1361 240 316 80 36 chr5 101839044 101839182 -50698077 - ORR1E LTR MaLR -163 196 53 4 1361 25 0 0 0 chr5 101840091 101840116 -50697143 + AT_rich Low_complexity Low_complexity 1 25 0 4 1361 758 131 15 0 chr5 101840503 101840633 -50696626 + (GAAA)n Simple_repeat Simple_repeat 2 133 0 4 1361 228 276 144 17 chr5 101840689 101840807 -50696452 + MIRc SINE MIR 19 151 -117 4 1361 204 359 67 19 chr5 101841926 101842031 -50695228 + MIRm SINE MIR 159 268 -8 4 1361 572 262 176 35 chr5 101842031 101842292 -50694967 - RMER15 LTR ERVL -1 574 277 4 1361 289 156 61 61 chr5 101842400 101842482 -50694777 - RMER15 LTR ERVL -480 95 14 4 1362 199 330 21 21 chr5 101843630 101843723 -50693536 - L3b LINE CR1 -231 251 159 4 1362 311 292 9 0 chr5 101843734 101843847 -50693412 - MER33 DNA MER1_type 0 324 211 4 1362 348 330 43 39 chr5 101843844 101844052 -50693207 - MLT1D LTR MaLR -17 488 280 4 1362 289 286 91 10 chr5 101844097 101844196 -50693063 - MLT1D LTR MaLR -364 141 35 4 1362 233 276 99 30 chr5 101844312 101844413 -50692846 - MER33 DNA MER1_type -216 108 1 4 1362 219 294 145 36 chr5 101845343 101845509 -50691750 + L2 LINE L2 2772 2955 -464 4 1362 217 380 92 16 chr5 101845819 101846068 -50691191 - L2 LINE L2 -555 2864 2597 4 1362 965 75 35 17 chr5 101846073 101846306 -50690953 + (CAGA)n Simple_repeat Simple_repeat 1 237 0 4 1362 490 115 19 19 chr5 101846306 101846412 -50690847 + (CAGAGA)n Simple_repeat Simple_repeat 3 108 0 4 1362 1966 228 80 12 chr5 101846731 101847158 -50690101 - Lx5 LINE L1 -1 7049 6594 4 1362 722 168 96 5 chr5 101847168 101847365 -50689894 - Lx9 LINE L1 -7 7637 7423 4 1362 1500 133 51 0 chr5 101847385 101847641 -50689618 - ORR1A3 LTR MaLR -55 271 3 4 1362 7416 94 18 5 chr5 101847643 101848749 -50688510 - ORR1A3-int LTR MaLR 0 1963 844 4 1362 625 24 24 0 chr5 101848804 101848887 -50688372 + (TATG)n Simple_repeat Simple_repeat 2 86 0 4 1362 3326 199 96 8 chr5 101848909 101849619 -50687640 - Lx9 LINE L1 -264 7380 6609 4 1362 400 318 27 7 chr5 101849619 101849768 -50687491 - MLT1A0 LTR MaLR -198 167 16 4 1362 860 157 216 0 chr5 101851180 101851365 -50685894 + URR1B DNA MER1_type 1 225 0 4 1362 773 273 164 68 chr5 101851365 101851686 -50685573 - MT2A LTR ERVL -16 517 190 4 1362 3114 57 10 27 chr5 101851686 101852100 -50685159 - MTB_Mm LTR MaLR 0 407 1 4 1362 773 273 164 68 chr5 101852100 101852249 -50685010 - MT2A LTR ERVL -344 189 2 4 1362 189 0 0 0 chr5 101852799 101852820 -50684439 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1362 267 192 39 0 chr5 101853051 101853129 -50684130 + (TAAA)n Simple_repeat Simple_repeat 1 81 0 4 1362 1054 105 31 10 chr5 101853112 101854052 -50683207 + (TAGA)n Simple_repeat Simple_repeat 1 960 0 4 1362 243 61 0 0 chr5 101854079 101854112 -50683147 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1362 427 43 13 103 chr5 101854113 101854191 -50683068 + B1_Mm SINE Alu 77 147 0 4 1362 375 205 65 24 chr5 101854202 101854372 -50682887 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 4 1362 499 345 45 10 chr5 101856255 101856457 -50680802 + B4 SINE B4 1 209 -83 4 1362 360 0 0 0 chr5 101856484 101856524 -50680735 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1362 296 326 49 14 chr5 101856537 101856680 -50680579 + Lx9 LINE L1 7322 7469 -175 4 1362 180 0 0 0 chr5 101857699 101857719 -50679540 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 4 1362 1177 68 0 0 chr5 101857896 101858043 -50679216 - B1_Mm SINE Alu 0 147 1 4 1362 214 151 0 54 chr5 101861909 101861965 -50675294 + GA-rich Low_complexity Low_complexity 4 56 0 4 1362 191 204 0 18 chr5 101862265 101862320 -50674939 + GA-rich Low_complexity Low_complexity 3 56 0 4 1362 960 9 0 0 chr5 101862341 101862450 -50674809 + (GAA)n Simple_repeat Simple_repeat 3 111 0 4 1362 483 239 104 58 chr5 101862497 101862670 -50674589 + B3A SINE B2 2 182 -16 4 1362 311 226 0 8 chr5 101862695 101862829 -50674430 + (CA)n Simple_repeat Simple_repeat 2 134 0 4 1362 1086 109 0 29 chr5 101863023 101863266 -50673993 + (TG)n Simple_repeat Simple_repeat 1 236 0 4 1362 229 259 170 65 chr5 101863941 101864094 -50673165 - B3A SINE B2 -23 175 7 4 1362 486 0 0 0 chr5 101864281 101864335 -50672924 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1362 499 344 73 4 chr5 101865873 101866121 -50671138 - LTR16E2 LTR ERVL -72 496 232 4 1362 396 0 0 0 chr5 101867174 101867218 -50670041 + (A)n Simple_repeat Simple_repeat 1 44 0 4 1362 468 0 0 0 chr5 101868044 101868096 -50669163 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1362 279 0 0 0 chr5 101869565 101869596 -50667663 + (TAA)n Simple_repeat Simple_repeat 2 32 0 4 1362 520 162 34 11 chr5 101870598 101870773 -50666486 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 4 1362 21 0 0 0 chr5 101871208 101871229 -50666030 + AT_rich Low_complexity Low_complexity 1 21 0 5 1362 1133 188 188 48 chr5 101871232 101871259 -50666000 + Lx3C LINE L1 5651 5676 -978 5 1362 873 65 51 13 chr5 101871259 101871416 -50665843 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 5 1362 6719 151 39 18 chr5 101871416 101872663 -50664596 + Lx3C LINE L1 5677 6972 -4 5 1362 23 0 0 0 chr5 101872667 101872690 -50664569 + AT_rich Low_complexity Low_complexity 1 23 0 5 1362 605 314 65 24 chr5 101872797 101873136 -50664123 + L1MB3 LINE L1 5551 5903 -280 5 1362 234 0 0 0 chr5 101874674 101874700 -50662559 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1362 600 325 107 32 chr5 101875659 101875822 -50661437 + MTEa LTR MaLR 3 157 -222 5 1362 657 69 0 0 chr5 101875822 101875909 -50661350 + (TAAAA)n Simple_repeat Simple_repeat 3 89 0 5 1362 600 325 107 32 chr5 101875909 101876091 -50661168 + MTEa LTR MaLR 158 373 -6 5 1362 328 274 132 13 chr5 101876711 101876870 -50660389 + MIR SINE MIR 12 189 -73 5 1362 524 254 56 0 chr5 101878365 101878507 -50658752 + RMER10B LTR ERVL 249 398 0 5 1362 1075 194 128 36 chr5 101878577 101878881 -50658378 - IAPEY3_LTR LTR ERVK 0 332 1 5 1362 346 268 180 8 chr5 101879668 101879796 -50657463 + Charlie1a DNA MER1_type 1 150 -1305 5 1362 353 271 56 31 chr5 101880003 101880163 -50657096 + Charlie1a DNA MER1_type 261 424 -1031 5 1362 387 0 0 0 chr5 101880170 101880213 -50657046 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1362 711 277 67 17 chr5 101880558 101880797 -50656462 - Lx8 LINE L1 -349 7124 6874 5 1362 1105 298 99 43 chr5 101880877 101881066 -50656193 + Charlie1a DNA MER1_type 569 774 -681 5 1362 1309 176 63 137 chr5 101881066 101881295 -50655964 - ORR1C2 LTR MaLR 0 384 174 5 1362 941 112 23 12 chr5 101881295 101881467 -50655792 + (GGGAGA)n Simple_repeat Simple_repeat 3 176 0 5 1362 1309 176 63 137 chr5 101881467 101881652 -50655607 - ORR1C2 LTR MaLR -211 173 1 5 1362 1105 298 99 43 chr5 101881652 101882289 -50654970 + Charlie1a DNA MER1_type 775 1440 -15 5 1362 331 223 50 50 chr5 101882633 101882732 -50654527 - ORR1E LTR MaLR -17 362 264 5 1362 538 274 68 84 chr5 101882724 101883035 -50654224 - ORR1E LTR MaLR -52 307 2 5 1362 892 205 125 0 chr5 101883860 101884060 -50653199 + URR1A DNA MER1_type 2 226 0 5 1362 1710 57 0 0 chr5 101884139 101884366 -50652893 - MTB_Mm LTR MaLR 0 407 181 5 1362 4911 25 7 0 chr5 101884368 101884930 -50652329 - L1Md_F2 LINE L1 0 6582 6017 5 1362 3582 50 0 0 chr5 101884930 101885388 -50651871 + L1_Mm LINE L1 1721 2178 -3705 5 1362 1331 49 60 0 chr5 101885388 101885572 -50651687 - MTB_Mm LTR MaLR -212 195 1 5 1362 495 0 0 0 chr5 101886630 101886685 -50650574 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1362 630 37 0 0 chr5 101886685 101886765 -50650494 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1362 212 283 204 19 chr5 101886818 101886926 -50650333 + MIR SINE MIR 26 153 -109 5 1362 484 15 31 0 chr5 101887892 101887957 -50649302 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1362 3269 143 47 15 chr5 101888035 101888583 -50648676 - RLTR12A LTR ERVK -2 566 1 5 1362 279 54 0 0 chr5 101888845 101888882 -50648377 + (TTGG)n Simple_repeat Simple_repeat 2 38 0 5 1362 408 293 51 39 chr5 101888908 101889064 -50648195 - RSINE1 SINE B4 -6 159 2 5 1362 1230 250 19 113 chr5 101889111 101889576 -50647683 + MTD LTR MaLR 6 419 0 5 1362 182 219 49 0 chr5 101889748 101889789 -50647470 - L2c LINE L2 -71 3316 3274 5 1362 249 62 104 0 chr5 101893258 101893306 -50643953 - B2_Mm2 SINE B2 -138 57 5 5 1362 789 87 0 0 chr5 101893296 101893411 -50643848 + B2_Mm2 SINE B2 40 154 -41 5 1362 378 232 192 0 chr5 101893424 101893523 -50643736 - Lx9 LINE L1 -413 7231 7114 5 1362 505 146 19 19 chr5 101893537 101893642 -50643617 + Lx9 LINE L1 7539 7643 -1 5 1362 329 271 50 116 chr5 101893770 101893960 -50643299 + L1M3 LINE L1 3118 3294 -2849 5 1362 369 0 0 0 chr5 101893960 101894001 -50643258 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1362 329 271 50 116 chr5 101894001 101894069 -50643190 + L1M3 LINE L1 3295 3359 -2784 5 1362 3415 249 35 58 chr5 101894124 101895115 -50642144 + RMER1C Other Other 375 1342 0 5 1362 1032 209 248 3 chr5 101895212 101895535 -50641724 - MTD LTR MaLR 0 419 18 5 1362 583 313 58 3 chr5 101895608 101895900 -50641359 - L1MA5 LINE L1 -32 6268 5961 5 1362 1248 319 71 13 chr5 101895909 101896504 -50640755 - Lx8 LINE L1 -4 7469 6841 5 1362 392 264 127 23 chr5 101896505 101896726 -50640533 + L1M3 LINE L1 4415 4658 -1482 5 1362 347 343 26 67 chr5 101896764 101896958 -50640301 + B3A SINE B2 8 193 -5 5 1362 21 36 0 0 chr5 101896958 101896986 -50640273 + AT_rich Low_complexity Low_complexity 1 28 0 5 1362 1572 221 40 0 chr5 101897008 101897361 -50639898 - ORR1D2 LTR MaLR -3 367 1 5 1362 412 247 139 94 chr5 101897527 101897832 -50639427 - L1M5 LINE L1 -1433 4713 4388 5 1362 9139 31 4 0 chr5 101898943 101900156 -50637103 - MERVL-int LTR ERVL -3722 2039 686 5 1362 688 266 115 17 chr5 101900159 101900417 -50636842 + B4A SINE B4 46 292 0 5 1362 4594 137 25 8 chr5 101900778 101901509 -50635750 + Lx LINE L1 5900 6642 -12 5 1362 24 0 0 0 chr5 101901634 101901658 -50635601 + AT_rich Low_complexity Low_complexity 1 24 0 5 1362 375 134 0 0 chr5 101902330 101902412 -50634847 + (TA)n Simple_repeat Simple_repeat 2 83 0 5 1362 269 180 0 0 chr5 101904848 101904898 -50632361 + MTEb LTR MaLR 329 378 -1 5 1362 414 148 30 0 chr5 101906889 101906990 -50630269 + CT-rich Low_complexity Low_complexity 1 104 0 5 1362 874 286 42 11 chr5 101907020 101907303 -50629956 - B4A SINE B4 0 292 1 5 1362 22 56 0 0 chr5 101907500 101907536 -50629723 + AT_rich Low_complexity Low_complexity 1 36 0 5 1362 247 301 136 13 chr5 101909488 101909709 -50627550 + B4 SINE B4 41 278 -14 5 1362 706 232 8 115 chr5 101910343 101910562 -50626697 - MLT1B LTR MaLR 0 390 198 5 1362 1173 83 0 0 chr5 101910562 101910742 -50626517 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1362 706 232 8 115 chr5 101910742 101910775 -50626484 - MLT1B LTR MaLR -193 197 165 5 1362 208 154 0 25 chr5 101911813 101911853 -50625406 + (CCCTAA)n Simple_repeat Simple_repeat 6 44 0 5 1362 248 354 53 0 chr5 101912228 101912341 -50624918 + L2c LINE L2 3224 3342 -45 5 1362 501 17 0 0 chr5 101912677 101912735 -50624524 + (TAA)n Simple_repeat Simple_repeat 3 60 0 5 1362 228 163 0 0 chr5 101912824 101912867 -50624392 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1362 381 149 0 0 chr5 101913188 101913255 -50624004 + (TCCC)n Simple_repeat Simple_repeat 3 69 0 5 1362 212 184 0 20 chr5 101918069 101918119 -50619140 + CT-rich Low_complexity Low_complexity 6 54 0 5 1362 271 293 242 8 chr5 101918133 101918257 -50619002 - RSINE1 SINE B4 -10 155 3 5 1362 1057 234 187 33 chr5 101920193 101920556 -50616703 - MTD LTR MaLR 0 419 1 5 1362 277 332 59 82 chr5 101921034 101921262 -50615997 - MLT2B3 LTR ERVL -186 484 262 5 1362 308 343 76 76 chr5 101921667 101921907 -50615352 - ORR1E LTR MaLR 0 359 133 5 1362 2116 162 73 15 chr5 101921907 101922302 -50614957 + MTC LTR MaLR 1 418 -3 5 1362 308 343 76 76 chr5 101922302 101922417 -50614842 - ORR1E LTR MaLR -227 132 5 5 1362 306 0 0 0 chr5 101925719 101925753 -50611506 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5 1362 255 354 17 0 chr5 101928570 101928704 -50608555 - MER63A DNA AcHobo -54 156 43 5 1362 709 280 52 55 chr5 101928795 101929086 -50608173 - B4A SINE B4 0 292 3 5 1362 224 184 0 39 chr5 101929530 101929581 -50607678 + (CACCC)n Simple_repeat Simple_repeat 3 51 0 5 1362 574 245 35 7 chr5 101929783 101929927 -50607332 - B1_Mur1 SINE Alu -1 148 1 5 1362 443 293 0 100 chr5 101930124 101930174 -50607085 - B3A SINE B2 0 198 154 5 1362 414 0 0 0 chr5 101930174 101930220 -50607039 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1362 443 293 0 100 chr5 101930220 101930389 -50606870 - B3A SINE B2 -45 153 1 5 1362 215 286 26 0 chr5 101930743 101930820 -50606439 + MIRb SINE MIR 114 192 -76 5 1362 433 257 73 112 chr5 101932641 101932847 -50604412 - B3A SINE B2 0 198 1 5 1362 308 345 95 28 chr5 101933095 101933144 -50604115 - L1ME2 LINE L1 -232 5942 5894 5 1362 1691 212 57 12 chr5 101933144 101933545 -50603714 + MTD LTR MaLR 1 419 0 5 1362 497 327 137 30 chr5 101933545 101934063 -50603196 - L1ME2 LINE L1 -281 5893 5310 5 1362 1358 82 16 5 chr5 101934063 101934248 -50603011 - B2_Mm2 SINE B2 -8 187 1 5 1362 412 301 67 90 chr5 101934248 101934535 -50602724 - L1ME2 LINE L1 -837 5309 5024 5 1362 887 301 74 47 chr5 101935386 101935941 -50601318 - L1ME2 LINE L1 -1188 4958 4389 5 1362 348 111 0 0 chr5 101936039 101936093 -50601166 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1362 1940 259 31 56 chr5 101936107 101936696 -50600563 - Lx9 LINE L1 -203 7441 6868 5 1362 29 0 0 0 chr5 101936810 101936839 -50600420 + AT_rich Low_complexity Low_complexity 1 29 0 5 1362 265 327 113 30 chr5 101936919 101937149 -50600110 + MER76 LTR ERVL 25 273 -418 5 1362 1014 255 98 53 chr5 101937260 101937657 -50599602 - Lx7 LINE L1 -463 7233 6819 5 1362 344 231 51 13 chr5 101937977 101938056 -50599203 + RSINE1 SINE B4 37 118 -47 5 1362 22 0 0 0 chr5 101938070 101938092 -50599167 + AT_rich Low_complexity Low_complexity 1 22 0 5 1362 223 373 31 16 chr5 101939537 101939665 -50597594 + L2b LINE L2 3240 3369 -6 5 1362 1248 292 74 44 chr5 101939933 101940095 -50597164 - L1MA6 LINE L1 -344 5956 5798 5 1362 360 0 0 0 chr5 101940095 101940135 -50597124 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1362 1248 294 80 43 chr5 101940135 101940739 -50596520 - L1MA6 LINE L1 -503 5797 5114 5 1362 1824 189 89 5 chr5 101941170 101941552 -50595707 - MTD LTR MaLR -4 415 2 5 1362 1802 17 0 75 chr5 101941670 101941925 -50595334 + IAPLTR2b LTR ERVK 92 327 0 5 1362 885 45 0 0 chr5 101942425 101942535 -50594724 + (TC)n Simple_repeat Simple_repeat 1 110 0 5 1362 2891 78 2 40 chr5 101943348 101943815 -50593444 + RMER16 LTR ERVK 1 533 0 5 1362 2817 80 0 6 chr5 101943894 101944258 -50593001 - Lx2 LINE L1 -184 6813 6452 5 1362 27 0 0 0 chr5 101944389 101944416 -50592843 + AT_rich Low_complexity Low_complexity 1 27 0 5 1362 810 226 67 16 chr5 101944748 101944941 -50592318 + B3 SINE B2 14 216 0 5 1362 242 228 0 17 chr5 101945036 101945094 -50592165 - MTC LTR MaLR 0 421 365 5 1362 766 170 13 58 chr5 101945094 101945250 -50592009 + B1_Mur4 SINE Alu 2 150 0 5 1362 300 186 0 0 chr5 101945259 101945318 -50591941 + GA-rich Low_complexity Low_complexity 4 62 0 5 1362 853 141 11 11 chr5 101945320 101945427 -50591832 + polypurine Low_complexity Low_complexity 1 109 0 5 1362 1205 86 0 11 chr5 101945427 101945604 -50591655 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 6 1362 853 141 11 11 chr5 101945604 101945676 -50591583 + polypurine Low_complexity Low_complexity 110 179 0 6 1362 1647 168 73 0 chr5 101945731 101946046 -50591213 - MTC LTR MaLR -83 338 1 5 1362 293 287 23 11 chr5 101946721 101946809 -50590450 - ORR1E LTR MaLR -115 244 156 6 1362 474 234 0 0 chr5 101946841 101947016 -50590243 + (TG)n Simple_repeat Simple_repeat 2 176 0 6 1362 810 184 0 0 chr5 101947075 101947254 -50590005 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1362 471 264 122 143 chr5 101947279 101947299 -50589960 - B4 SINE B4 0 292 276 6 1362 420 71 0 0 chr5 101947299 101947355 -50589904 + (TATG)n Simple_repeat Simple_repeat 3 58 0 6 1362 471 264 122 143 chr5 101947355 101947621 -50589638 - B4 SINE B4 -17 275 12 6 1362 792 0 0 0 chr5 101947621 101947709 -50589550 + (CCCCAG)n Simple_repeat Simple_repeat 1 88 0 6 1362 309 256 26 0 chr5 101948487 101948565 -50588694 + ID SINE ID 2 81 -143 6 1362 749 110 0 8 chr5 101948842 101948886 -50588373 + (TTC)n Simple_repeat Simple_repeat 1 44 0 6 1362 1557 17 0 0 chr5 101948886 101949066 -50588193 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 6 1362 749 110 0 8 chr5 101949066 101949140 -50588119 + (TTC)n Simple_repeat Simple_repeat 2 75 0 6 1362 500 224 0 60 chr5 101950655 101950840 -50586419 + (CA)n Simple_repeat Simple_repeat 1 174 0 6 1362 799 128 113 0 chr5 101951328 101951461 -50585798 - B1_Mur2 SINE Alu -1 148 1 6 1362 297 301 12 123 chr5 101952124 101952287 -50584972 + MLT1B LTR MaLR 217 361 -29 6 1362 215 252 18 97 chr5 101952412 101952526 -50584733 + B1_Mur1 SINE Alu 45 149 0 6 1362 231 186 0 0 chr5 101952856 101952899 -50584360 + C-rich Low_complexity Low_complexity 1 43 0 6 1362 234 0 0 0 chr5 101954672 101954698 -50582561 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1362 542 228 83 0 chr5 101955016 101955196 -50582063 + Lx9 LINE L1 7444 7638 -6 6 1362 1065 80 0 0 chr5 101955217 101955367 -50581892 + B2_Mm2 SINE B2 2 151 -44 6 1362 300 303 69 50 chr5 101955769 101955929 -50581330 + MIR SINE MIR 86 248 -14 6 1362 1098 310 178 32 chr5 101956315 101957292 -50579967 + L1MC3 LINE L1 6659 7778 -7 6 1362 400 258 111 13 chr5 101957797 101957950 -50579309 + Lx8 LINE L1 6792 6959 -514 6 1362 759 152 30 13 chr5 101957962 101958439 -50578820 + (CA)n Simple_repeat Simple_repeat 1 485 0 6 1362 563 291 148 70 chr5 101958451 101958924 -50578335 + Lx8 LINE L1 6964 7473 0 6 1362 307 187 187 0 chr5 101959755 101959830 -50577429 - RSINE1 SINE B4 -21 144 56 6 1362 1261 41 0 0 chr5 101960349 101960496 -50576763 + B1_Mus2 SINE Alu 1 147 0 6 1362 225 83 0 0 chr5 101960496 101960532 -50576727 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1362 418 254 46 31 chr5 101960617 101960747 -50576512 + MIR SINE MIR 110 241 -21 6 1362 1058 83 6 0 chr5 101960855 101961011 -50576248 - ORR1A4 LTR MaLR 0 329 173 6 1362 204 150 25 0 chr5 101961042 101961082 -50576177 + A-rich Low_complexity Low_complexity 1 41 0 6 1362 248 269 103 0 chr5 101963765 101963843 -50573416 + B3 SINE B2 2 87 -129 6 1362 456 200 24 0 chr5 101963867 101963992 -50573267 + (CA)n Simple_repeat Simple_repeat 2 129 0 6 1362 25 0 0 0 chr5 101963994 101964019 -50573240 + AT_rich Low_complexity Low_complexity 1 25 0 6 1362 1170 82 0 0 chr5 101964024 101964171 -50573088 + B1_Mus2 SINE Alu 1 147 0 6 1362 195 42 0 0 chr5 101964191 101964215 -50573044 + (TAA)n Simple_repeat Simple_repeat 2 25 0 6 1362 193 323 98 15 chr5 101964864 101964996 -50572263 - MIR SINE MIR -12 250 108 6 1362 224 222 74 0 chr5 101965616 101965670 -50571589 + B4A SINE B4 1 58 -234 6 1362 802 149 0 29 chr5 101965671 101965809 -50571450 + B1_Mur3 SINE Alu 2 135 -14 6 1362 261 0 67 22 chr5 101965818 101965863 -50571396 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 6 1362 379 265 31 81 chr5 101965865 101966025 -50571234 + B4A SINE B4 50 201 -91 6 1362 1064 114 6 0 chr5 101966026 101966193 -50571066 + (GGAAA)n Simple_repeat Simple_repeat 5 172 0 6 1362 318 50 0 0 chr5 101966206 101966246 -50571013 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1362 456 19 0 0 chr5 101966288 101966341 -50570918 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1362 306 0 0 0 chr5 101966500 101966534 -50570725 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1362 261 0 0 0 chr5 101967757 101967786 -50569473 + (TA)n Simple_repeat Simple_repeat 1 29 0 6 1362 261 0 0 0 chr5 101967786 101967814 -50569445 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 1362 181 328 0 0 chr5 101968767 101968834 -50568425 - MIRb SINE MIR -144 124 58 6 1362 777 185 0 17 chr5 101969031 101969212 -50568047 + GA-rich Low_complexity Low_complexity 3 180 0 6 1362 261 158 128 128 chr5 101969988 101970082 -50567177 - B2_Mm2 SINE B2 -24 171 78 6 1362 379 202 0 92 chr5 101970192 101970290 -50566969 + PB1D9 SINE Alu 31 119 -1 6 1362 228 69 0 0 chr5 101970383 101970412 -50566847 - L1M3d LINE L1 -5546 345 317 6 1362 228 135 19 37 chr5 101971040 101971094 -50566165 + A-rich Low_complexity Low_complexity 3 55 0 6 1363 490 125 0 11 chr5 101975266 101975355 -50561904 + Lx3C LINE L1 6888 6975 -1 6 1363 216 158 0 0 chr5 101975381 101975419 -50561840 + GA-rich Low_complexity Low_complexity 6 43 0 6 1363 1033 128 0 16 chr5 101975426 101975548 -50561711 + (GAA)n Simple_repeat Simple_repeat 1 120 0 6 1363 1620 0 0 0 chr5 101975548 101975728 -50561531 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1363 1033 128 0 16 chr5 101975728 101975787 -50561472 + (GAA)n Simple_repeat Simple_repeat 1 59 0 6 1363 246 128 0 0 chr5 101976640 101976679 -50560580 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 6 1363 378 107 0 0 chr5 101976787 101976843 -50560416 + (TCC)n Simple_repeat Simple_repeat 3 58 0 6 1363 2385 103 18 0 chr5 101977037 101977377 -50559882 - ORR1A1 LTR MaLR 0 346 1 6 1363 283 312 55 16 chr5 101978192 101978319 -50558940 - MIR SINE MIR -115 147 16 6 1363 837 0 0 0 chr5 101979008 101979101 -50558158 + (GAA)n Simple_repeat Simple_repeat 1 93 0 6 1363 420 318 39 33 chr5 101979717 101979899 -50557360 - RMER15 LTR ERVL -106 469 287 6 1363 293 178 47 0 chr5 101979940 101980047 -50557212 + (CTGGGG)n Simple_repeat Simple_repeat 2 113 0 6 1363 261 248 9 56 chr5 101980047 101980154 -50557105 + G-rich Low_complexity Low_complexity 1 102 0 6 1363 180 111 0 0 chr5 101980601 101980628 -50556631 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 6 1363 329 157 52 9 chr5 101981509 101981625 -50555634 + (TG)n Simple_repeat Simple_repeat 2 122 0 6 1363 239 255 47 47 chr5 101981626 101981733 -50555526 - B4A SINE B4 0 292 186 6 1363 1532 111 0 0 chr5 101981981 101982207 -50555052 - MTB_Mm LTR MaLR 0 407 182 6 1363 446 144 92 46 chr5 101982244 101982397 -50554862 - RMER17C LTR ERVK -135 275 116 6 1363 1074 77 92 29 chr5 101982405 101982579 -50554680 - MTB_Mm LTR MaLR -222 185 1 6 1363 778 106 46 18 chr5 101982615 101982952 -50554307 + (TAGA)n Simple_repeat Simple_repeat 1 346 0 6 1363 279 54 0 0 chr5 101982980 101983017 -50554242 + (CATA)n Simple_repeat Simple_repeat 3 39 0 6 1363 491 283 99 46 chr5 101983028 101983430 -50553829 - L1_Rod LINE L1 -561 5742 5262 6 1363 270 0 0 0 chr5 101983430 101983460 -50553799 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1363 423 285 167 36 chr5 101983460 101983531 -50553728 - L1_Rod LINE L1 -586 5261 5156 6 1363 23 0 0 0 chr5 101983849 101983872 -50553387 + AT_rich Low_complexity Low_complexity 1 23 0 6 1363 753 257 53 0 chr5 101984013 101984184 -50553075 - B3A SINE B2 -18 180 1 6 1363 284 268 14 0 chr5 101984421 101984492 -50552767 - Tigger6b DNA MER2_type -5 1592 1521 6 1363 279 0 0 0 chr5 101984496 101984527 -50552732 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 6 1363 876 152 213 0 chr5 101984531 101984695 -50552564 - B3 SINE B2 -17 199 1 6 1363 444 19 0 0 chr5 101984715 101984768 -50552491 + (TTA)n Simple_repeat Simple_repeat 3 55 0 6 1363 2729 37 3 9 chr5 101984768 101985088 -50552171 - L1_Mus1 LINE L1 -6 6561 6241 6 1363 321 350 10 0 chr5 101985157 101985254 -50552005 + B3A SINE B2 1 98 -100 6 1363 324 0 0 0 chr5 101985261 101985297 -50551962 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1363 22 0 0 0 chr5 101985337 101985359 -50551900 + AT_rich Low_complexity Low_complexity 1 22 0 6 1363 27 29 0 0 chr5 101985420 101985454 -50551805 + AT_rich Low_complexity Low_complexity 1 34 0 6 1363 480 282 59 20 chr5 101985463 101985615 -50551644 + RSINE1 SINE B4 5 162 -3 6 1363 330 250 25 0 chr5 101989360 101989440 -50547819 + B4A SINE B4 36 117 -175 6 1363 480 220 0 0 chr5 101989446 101989564 -50547695 + (TTG)n Simple_repeat Simple_repeat 2 119 0 6 1363 798 202 0 0 chr5 101989575 101989753 -50547506 + (TTG)n Simple_repeat Simple_repeat 2 179 0 6 1363 906 167 0 0 chr5 101989712 101989892 -50547367 + (CTG)n Simple_repeat Simple_repeat 1 180 0 6 1363 24 0 0 0 chr5 101990186 101990210 -50547049 + AT_rich Low_complexity Low_complexity 1 24 0 6 1363 1372 157 78 69 chr5 101990427 101990841 -50546418 - ORR1C1 LTR MaLR 0 378 1 6 1363 976 259 71 46 chr5 101991134 101991417 -50545842 + B4 SINE B4 3 292 0 6 1363 656 152 22 18 chr5 101991444 101991678 -50545581 + (CA)n Simple_repeat Simple_repeat 1 235 0 6 1363 938 221 213 22 chr5 101992147 101992461 -50544798 - ORR1D2 LTR MaLR 0 374 1 6 1363 1119 96 0 0 chr5 101993051 101993188 -50544071 + B1_Mus2 SINE Alu 1 137 -10 6 1363 212 0 0 35 chr5 101993188 101993217 -50544042 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 6 1363 267 31 0 0 chr5 101993397 101993429 -50543830 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 6 1363 474 49 0 0 chr5 101994712 101994773 -50542486 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1363 2404 70 48 0 chr5 101995870 101996182 -50541077 + ORR1A2 LTR MaLR 1 327 0 6 1363 516 286 18 30 chr5 101998390 101998556 -50538703 + RSINE1 SINE B4 2 165 0 6 1363 193 312 180 0 chr5 102000143 102000271 -50536988 + MIR SINE MIR 86 236 -26 1 1363 4678 74 97 5 chr5 102003129 102003824 -50533435 + L1Md_F2 LINE L1 5869 6582 0 2 1363 453 286 39 0 chr5 102003880 102004034 -50533225 + C-rich Low_complexity Low_complexity 6 165 0 3 1363 24 67 0 0 chr5 102004341 102004386 -50532873 + AT_rich Low_complexity Low_complexity 1 45 0 4 1363 241 338 0 0 chr5 102007409 102007477 -50529782 + ID4 SINE ID 4 71 -12 5 1363 817 257 10 26 chr5 102007599 102007791 -50529468 - B3A SINE B2 0 198 10 6 1363 227 98 66 0 chr5 102008102 102008163 -50529096 + (TTA)n Simple_repeat Simple_repeat 2 66 0 7 1363 276 185 0 0 chr5 102009288 102009342 -50527917 + (TTG)n Simple_repeat Simple_repeat 1 54 0 8 1363 684 36 0 0 chr5 102009342 102009425 -50527834 + (TTC)n Simple_repeat Simple_repeat 2 84 0 9 1363 225 390 19 52 chr5 102009460 102009671 -50527588 + MLT1J LTR MaLR 112 315 -197 1 1363 227 260 25 49 chr5 102009840 102009921 -50527338 - MIR SINE MIR -177 85 7 1 1363 2555 141 15 35 chr5 102009938 102010393 -50526866 - Lx2B LINE L1 -2 6998 6553 1 1363 3824 47 0 15 chr5 102010388 102010866 -50526393 - L1Md_F2 LINE L1 0 6582 6112 1 1363 319 298 43 9 chr5 102011127 102011242 -50526017 + L1MEc LINE L1 503 621 -5779 1 1363 351 225 0 0 chr5 102011267 102011347 -50525912 + B1F SINE Alu 70 149 0 1 1363 801 58 0 0 chr5 102011356 102011459 -50525800 + (GAAA)n Simple_repeat Simple_repeat 4 106 0 1 1363 543 31 0 0 chr5 102011459 102011524 -50525735 + (GGGGA)n Simple_repeat Simple_repeat 3 67 0 1 1363 207 100 0 0 chr5 102011524 102011554 -50525705 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1363 436 250 0 10 chr5 102011653 102011750 -50525509 + PB1D10 SINE Alu 12 107 -10 1 1363 681 191 7 35 chr5 102011760 102011901 -50525358 + B1_Mur4 SINE Alu 2 138 -12 2 1363 453 36 0 0 chr5 102011901 102011956 -50525303 + (TAA)n Simple_repeat Simple_repeat 2 56 0 2 1363 951 75 0 0 chr5 102011960 102012093 -50525166 + (GAA)n Simple_repeat Simple_repeat 1 133 0 2 1363 259 250 0 0 chr5 102012117 102012169 -50525090 + ID4 SINE ID 2 53 -30 2 1363 221 288 92 113 chr5 102012267 102012408 -50524851 + B1F1 SINE Alu 7 144 -5 2 1363 1140 43 7 0 chr5 102012745 102012884 -50524375 + B1_Mus2 SINE Alu 2 141 -6 2 1363 1008 144 0 0 chr5 102012886 102013059 -50524200 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 2 1363 889 204 65 69 chr5 102013140 102013387 -50523872 - Lx9 LINE L1 -121 7523 7278 2 1363 227 312 0 13 chr5 102013606 102013684 -50523575 + ID4 SINE ID 3 79 -4 2 1363 1732 140 60 35 chr5 102014095 102014413 -50522846 + ORR1A3 LTR MaLR 1 326 0 2 1363 1467 268 134 15 chr5 102014582 102015045 -50522214 - Lx8 LINE L1 -21 7452 6935 3 1363 263 247 12 49 chr5 102015519 102015600 -50521659 + ID4 SINE ID 4 81 -2 3 1363 21 36 0 0 chr5 102016240 102016268 -50520991 + AT_rich Low_complexity Low_complexity 1 28 0 3 1363 673 200 57 0 chr5 102017031 102017171 -50520088 + B1_Mus1 SINE Alu 1 148 0 3 1363 239 260 91 0 chr5 102017284 102017361 -50519898 + ID SINE ID 2 85 -139 3 1363 512 172 247 31 chr5 102017576 102017604 -50519655 - B3A SINE B2 0 198 171 3 1363 711 35 0 0 chr5 102017604 102017690 -50519569 + (GA)n Simple_repeat Simple_repeat 1 86 0 3 1363 512 172 247 31 chr5 102017690 102017823 -50519436 - B3A SINE B2 -28 170 2 3 1363 241 238 32 0 chr5 102018003 102018066 -50519193 + L2a LINE L2 3362 3426 0 3 1363 361 178 14 36 chr5 102018184 102018324 -50518935 + (TATG)n Simple_repeat Simple_repeat 2 138 0 3 1363 449 47 16 0 chr5 102018333 102018397 -50518862 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1363 21 0 0 0 chr5 102019420 102019441 -50517818 + GC_rich Low_complexity Low_complexity 1 21 0 4 1363 407 267 9 68 chr5 102021832 102022053 -50515206 - Lx9 LINE L1 -18 7626 7419 4 1363 672 167 0 43 chr5 102022100 102022288 -50514971 + (TATG)n Simple_repeat Simple_repeat 1 180 0 4 1363 2410 195 30 14 chr5 102022332 102022836 -50514423 - Lx9 LINE L1 -127 7517 7006 4 1363 857 183 25 64 chr5 102023016 102023220 -50514039 + RLTR19-int LTR ERVK 2580 2775 -3362 4 1363 357 131 0 0 chr5 102023998 102024059 -50513200 + (CCCCCA)n Simple_repeat Simple_repeat 6 66 0 4 1363 406 222 11 0 chr5 102024449 102024539 -50512720 - PB1D7 SINE Alu 0 120 30 4 1363 1914 259 9 2 chr5 102026648 102027073 -50510186 + Lx9 LINE L1 6466 6893 -751 4 1363 2423 214 27 39 chr5 102027069 102027585 -50509674 + Lx5 LINE L1 6539 7048 -2 4 1363 872 266 34 58 chr5 102027607 102027902 -50509357 + Lx9 LINE L1 6912 7199 -445 4 1363 274 262 12 24 chr5 102027993 102028075 -50509184 + Lx9 LINE L1 7349 7429 -215 4 1363 342 0 0 0 chr5 102028098 102028136 -50509123 + (TC)n Simple_repeat Simple_repeat 1 38 0 4 1363 29 60 0 0 chr5 102028196 102028246 -50509013 + AT_rich Low_complexity Low_complexity 1 50 0 5 1363 966 155 0 0 chr5 102028640 102028808 -50508451 + GA-rich Low_complexity Low_complexity 2 169 0 5 1363 29 0 0 0 chr5 102029709 102029738 -50507521 + AT_rich Low_complexity Low_complexity 1 29 0 5 1363 716 232 3 0 chr5 102030635 102030952 -50506307 + (TA)n Simple_repeat Simple_repeat 1 317 0 5 1363 1116 304 121 33 chr5 102033031 102033676 -50503583 - L1MB3 LINE L1 -2 6181 5480 5 1363 420 20 0 0 chr5 102033701 102033750 -50503509 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1363 2957 103 5 0 chr5 102033983 102034381 -50502878 - MTB LTR MaLR 0 400 1 5 1363 263 49 24 0 chr5 102035342 102035383 -50501876 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 5 1363 249 264 0 0 chr5 102035867 102035920 -50501339 + PB1D10 SINE Alu 52 104 -13 5 1363 195 139 0 0 chr5 102036606 102036642 -50500617 + (AGGGGG)n Simple_repeat Simple_repeat 4 39 0 5 1363 242 155 157 32 chr5 102036937 102037062 -50500197 + B3 SINE B2 9 216 0 6 1363 249 33 0 0 chr5 102037070 102037100 -50500159 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1363 21 0 0 0 chr5 102037792 102037813 -50499446 + AT_rich Low_complexity Low_complexity 1 21 0 6 1363 229 238 62 0 chr5 102037843 102037923 -50499336 - L1M2 LINE L1 -453 5838 5754 6 1363 465 192 54 77 chr5 102039094 102039224 -50498035 + B3A SINE B2 72 198 0 6 1363 276 330 19 59 chr5 102039345 102039502 -50497757 + B1F SINE Alu 3 145 -4 6 1363 22 0 0 0 chr5 102039510 102039532 -50497727 + AT_rich Low_complexity Low_complexity 1 22 0 6 1363 495 0 0 0 chr5 102039598 102039653 -50497606 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1363 346 195 241 0 chr5 102039709 102039796 -50497463 - B3A SINE B2 -90 108 1 6 1363 258 267 14 0 chr5 102039860 102039945 -50497314 + ID4 SINE ID 11 96 -56 6 1363 257 140 0 17 chr5 102040561 102040619 -50496640 + A-rich Low_complexity Low_complexity 4 60 0 7 1363 720 111 0 0 chr5 102041007 102041124 -50496135 + (GGAA)n Simple_repeat Simple_repeat 2 118 0 7 1363 528 246 8 0 chr5 102041542 102041664 -50495595 + RSINE1 SINE B4 40 162 -3 7 1363 586 321 78 23 chr5 102041950 102042297 -50494962 - Arthur1 DNA Tip100 -3048 899 534 7 1363 282 39 58 0 chr5 102042550 102042602 -50494657 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 7 1363 1135 82 7 0 chr5 102042602 102042748 -50494511 - B1_Mus2 SINE Alu 0 147 1 7 1363 694 201 44 7 chr5 102042772 102042907 -50494352 + B1_Mur1 SINE Alu 2 141 -8 7 1363 302 272 12 0 chr5 102043102 102043183 -50494076 - ID4_ SINE ID 0 83 2 7 1363 196 306 111 0 chr5 102043183 102043291 -50493968 + L2a LINE L2 3262 3381 -45 7 1363 447 301 40 106 chr5 102044152 102044501 -50492758 - L1MC4 LINE L1 0 8042 7717 7 1363 3050 112 19 11 chr5 102044501 102044972 -50492287 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1363 3694 65 19 16 chr5 102044973 102045698 -50491561 + IAPEz-int LTR ERVK 9 662 -5819 8 1363 952 67 0 0 chr5 102045698 102045817 -50491442 + IAPEz-int LTR ERVK 1359 1477 -5004 8 1363 1894 93 0 0 chr5 102045818 102046064 -50491195 + IAPEz-int LTR ERVK 2252 2497 -5183 8 1363 15049 41 5 3 chr5 102046091 102047861 -50489398 + IAPEz-int LTR ERVK 4708 6479 -2 8 1363 3055 112 19 11 chr5 102047863 102048334 -50488925 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1363 286 312 35 45 chr5 102048350 102048551 -50488708 - L1MC4 LINE L1 -354 7688 7490 7 1363 324 282 45 9 chr5 102048702 102048813 -50488446 + RSINE1 SINE B4 7 121 -44 8 1363 297 186 14 14 chr5 102049066 102049150 -50488109 - PB1D10 SINE Alu -46 103 20 8 1363 545 261 96 6 chr5 102049874 102050051 -50487208 + B3A SINE B2 1 193 -5 8 1363 396 291 160 15 chr5 102051550 102051832 -50485427 - L1MEc LINE L1 -3706 2613 2293 8 1363 287 311 0 19 chr5 102052605 102052710 -50484549 + L1M4b LINE L1 1470 1572 -5530 8 1363 336 282 154 36 chr5 102052802 102053081 -50484178 + L1M4b LINE L1 1474 1785 -5549 8 1363 186 167 0 0 chr5 102053588 102053624 -50483635 + GA-rich Low_complexity Low_complexity 3 38 0 8 1363 863 109 7 0 chr5 102054430 102054577 -50482682 + (TC)n Simple_repeat Simple_repeat 1 148 0 8 1363 531 309 62 18 chr5 102054785 102055059 -50482200 + Lx8 LINE L1 6829 7114 -359 8 1363 1559 182 73 67 chr5 102055075 102055447 -50481812 + ORR1D1 LTR MaLR 1 374 0 9 1363 5423 192 104 18 chr5 102055465 102056676 -50480583 + ORR1D1-int LTR MaLR 56 1370 0 9 1363 1659 180 66 55 chr5 102056664 102057029 -50480230 + ORR1D1 LTR MaLR 3 371 -3 9 1363 787 254 12 28 chr5 102057353 102057561 -50479698 + B3 SINE B2 1 198 0 9 1363 781 218 0 13 chr5 102057572 102057721 -50479538 + B1_Mur1 SINE Alu 2 148 -1 9 1363 234 326 0 0 chr5 102057840 102057889 -50479370 + MIR SINE MIR 19 67 -195 9 1363 309 203 50 17 chr5 102058435 102058495 -50478764 + RLTR40 LTR ERVK 3 64 -753 9 1363 440 328 103 27 chr5 102058504 102058689 -50478570 - MLT1E3 LTR MaLR -18 606 408 9 1363 216 0 0 0 chr5 102059559 102059583 -50477676 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1363 396 0 0 0 chr5 102059584 102059628 -50477631 + (CAAAAA)n Simple_repeat Simple_repeat 5 48 0 9 1363 399 298 135 0 chr5 102060820 102060998 -50476261 + B3 SINE B2 1 202 -14 9 1363 1528 48 32 0 chr5 102061046 102061235 -50476024 + B2_Mm2 SINE B2 1 195 0 9 1363 359 350 89 10 chr5 102061235 102061437 -50475822 - MLT1E3 LTR MaLR -15 429 212 9 1363 278 306 0 0 chr5 102061459 102061531 -50475728 - MLT1E3 LTR MaLR -335 177 106 9 1363 730 166 7 7 chr5 102061743 102061895 -50475364 + GA-rich Low_complexity Low_complexity 3 154 0 1 1363 22 0 0 0 chr5 102062372 102062394 -50474865 + AT_rich Low_complexity Low_complexity 1 22 0 1 1363 207 0 0 0 chr5 102062414 102062437 -50474822 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1363 898 213 117 0 chr5 102065799 102065987 -50471272 + B3 SINE B2 2 211 -5 1 1363 2227 169 51 13 chr5 102066174 102066569 -50470690 - MTC LTR MaLR -9 412 3 1 1363 1270 77 29 20 chr5 102066577 102067021 -50470238 + (TAGA)n Simple_repeat Simple_repeat 1 447 0 1 1363 509 171 54 0 chr5 102067281 102067392 -50469867 + B1_Mus1 SINE Alu 31 147 -1 1 1363 189 0 0 0 chr5 102067495 102067516 -50469743 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1 1363 548 263 82 60 chr5 102067530 102067712 -50469547 + B3A SINE B2 2 187 -8 1 1363 764 303 34 27 chr5 102067771 102068063 -50469196 + L1MA4 LINE L1 5634 5927 -373 1 1363 280 279 76 9 chr5 102068503 102068608 -50468651 - Charlie4z DNA MER1_type -2 165 54 1 1363 567 0 0 0 chr5 102068999 102069062 -50468197 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1363 200 264 38 0 chr5 102069493 102069546 -50467713 - MIRb SINE MIR -29 239 185 1 1363 1055 97 0 14 chr5 102069572 102069708 -50467551 + B1_Mus1 SINE Alu 3 138 -10 1 1363 254 50 25 0 chr5 102069708 102069748 -50467511 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1363 1098 80 0 0 chr5 102069757 102069907 -50467352 + (GAAA)n Simple_repeat Simple_repeat 2 151 0 1 1363 281 265 42 77 chr5 102070835 102070978 -50466281 - YREP_Mm Unknown Unknown -1492 320 183 1 1363 481 276 52 0 chr5 102070868 102070984 -50466275 + B1F SINE Alu 28 149 0 1 1363 198 71 0 0 chr5 102071005 102071033 -50466226 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1363 635 67 0 11 chr5 102071042 102071132 -50466127 + (GGAA)n Simple_repeat Simple_repeat 3 91 0 1 1363 259 209 11 34 chr5 102071254 102071343 -50465916 + GA-rich Low_complexity Low_complexity 1 87 0 1 1363 268 280 200 16 chr5 102072202 102072387 -50464872 + MIRb SINE MIR 50 268 0 1 1363 339 25 0 0 chr5 102072787 102072827 -50464432 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 1 1363 207 133 22 22 chr5 102073350 102073396 -50463863 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 1 1363 266 188 30 30 chr5 102074964 102075030 -50462229 + CT-rich Low_complexity Low_complexity 6 71 0 1 1363 252 0 0 0 chr5 102075423 102075451 -50461808 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1363 279 0 0 0 chr5 102076717 102076748 -50460511 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1363 180 0 0 0 chr5 102078523 102078543 -50458716 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 1 1363 180 0 0 0 chr5 102078803 102078823 -50458436 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1 1363 1282 100 39 6 chr5 102078830 102079011 -50458248 - B2_Mm2 SINE B2 -8 187 1 1 1363 378 0 0 0 chr5 102079189 102079231 -50458028 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1363 371 158 88 50 chr5 102079249 102079329 -50457930 + ID_B1 SINE B4 124 206 -18 1 1363 322 311 0 10 chr5 102079828 102079932 -50457327 + PB1D10 SINE Alu 1 103 -14 1 1363 22 70 0 0 chr5 102079953 102079996 -50457263 + AT_rich Low_complexity Low_complexity 1 43 0 1 1363 198 128 0 0 chr5 102080302 102080341 -50456918 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1363 856 194 58 26 chr5 102080628 102080819 -50456440 + B3A SINE B2 2 198 0 1 1363 520 201 216 63 chr5 102081012 102081240 -50456019 - MLT1F1 LTR MaLR -4 565 312 1 1363 408 307 79 0 chr5 102081240 102081367 -50455892 + ID_B1 SINE B4 2 138 -86 1 1363 4243 42 0 2 chr5 102081453 102081949 -50455310 + L1_Mus1 LINE L1 6073 6567 0 1 1363 302 354 44 0 chr5 102082347 102082460 -50454799 - MIR SINE MIR -32 230 113 1 1363 309 273 52 0 chr5 102083615 102083692 -50453567 + B1F2 SINE Alu 1 81 -68 1 1363 366 333 6 30 chr5 102083693 102083857 -50453402 + GA-rich Low_complexity Low_complexity 2 161 0 1 1363 447 19 0 0 chr5 102084034 102084086 -50453173 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1363 513 12 0 65 chr5 102084261 102084353 -50452906 + (TTCTC)n Simple_repeat Simple_repeat 5 90 0 1 1363 189 0 0 0 chr5 102084358 102084379 -50452880 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1363 258 32 0 0 chr5 102084878 102084909 -50452350 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1363 306 0 0 0 chr5 102085858 102085892 -50451367 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1363 186 133 0 0 chr5 102086665 102086695 -50450564 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1363 252 143 0 0 chr5 102086999 102087041 -50450218 + (CAG)n Simple_repeat Simple_repeat 2 43 0 1 1363 243 79 0 0 chr5 102088194 102088232 -50449027 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1363 223 178 22 0 chr5 102088698 102088743 -50448516 + G-rich Low_complexity Low_complexity 6 51 0 1 1363 369 62 0 0 chr5 102089964 102090012 -50447247 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1363 504 0 0 0 chr5 102090340 102090396 -50446863 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1363 261 185 0 0 chr5 102092800 102092865 -50444394 + (CGG)n Simple_repeat Simple_repeat 2 66 0 1 1363 205 175 0 0 chr5 102092867 102092907 -50444352 + GA-rich Low_complexity Low_complexity 2 41 0 1 1363 189 159 0 0 chr5 102093070 102093114 -50444145 + GA-rich Low_complexity Low_complexity 1 44 0 1 1363 21 82 0 0 chr5 102093394 102093443 -50443816 + GC_rich Low_complexity Low_complexity 1 49 0 1 1363 461 209 6 0 chr5 102096314 102096472 -50440787 + GA-rich Low_complexity Low_complexity 1 159 0 1 1363 279 159 0 0 chr5 102098883 102098927 -50438332 - B1_Mus2 SINE Alu -8 139 96 1 1363 434 18 18 0 chr5 102098939 102098994 -50438265 + (TATG)n Simple_repeat Simple_repeat 2 57 0 1 1363 915 145 0 0 chr5 102098994 102099125 -50438134 - B1_Mus1 SINE Alu -2 146 16 1 1363 501 250 29 139 chr5 102099133 102099407 -50437852 + RLTR15 LTR ERVK 18 261 -98 1 1363 261 281 16 0 chr5 102099882 102099946 -50437313 + GA-rich Low_complexity Low_complexity 2 66 0 1 1363 305 225 0 40 chr5 102099971 102100045 -50437214 + ID4_ SINE ID 1 71 -12 1 1363 704 12 0 12 chr5 102100049 102100135 -50437124 + (GAAA)n Simple_repeat Simple_repeat 1 85 0 1 1363 1650 5 0 0 chr5 102100136 102100322 -50436937 + L1Md_A LINE L1 6397 6582 0 1 1363 759 167 0 0 chr5 102100340 102100478 -50436781 + GA-rich Low_complexity Low_complexity 3 140 0 1 1363 1148 118 36 36 chr5 102100625 102100819 -50436440 + B2_Mm2 SINE B2 1 194 -1 1 1363 241 222 0 53 chr5 102100883 102100959 -50436300 + T-rich Low_complexity Low_complexity 6 77 0 1 170 36180 73 5 6 chr5 102101019 102107184 -50430075 - L1Md_F2 LINE L1 -2 6580 442 1 1364 320 284 23 94 chr5 102107184 102107312 -50429947 - PB1D7 SINE Alu 0 120 2 1 1364 335 296 58 50 chr5 102107767 102107906 -50429353 - B1F SINE Alu -9 140 1 1 1364 289 352 67 17 chr5 102108693 102108872 -50428387 - MER20B DNA MER1_type -2 781 594 1 1364 312 233 126 0 chr5 102109011 102109114 -50428145 - MER20B DNA MER1_type -433 350 235 1 1364 252 86 0 0 chr5 102109155 102109190 -50428069 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1364 2549 77 27 0 chr5 102110097 102110434 -50426825 + ORR1A1 LTR MaLR 1 346 0 1 1364 497 16 16 0 chr5 102110860 102110922 -50426337 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1364 1023 122 0 0 chr5 102110922 102111061 -50426198 - B1_Mur2 SINE Alu -10 139 1 1 1364 314 291 75 34 chr5 102111705 102111851 -50425408 + B4A SINE B4 7 158 -134 1 1364 317 102 20 20 chr5 102111969 102112019 -50425240 + HAL1-3A_ME LINE L1 1976 2025 -833 1 1364 1142 132 23 0 chr5 102112840 102113014 -50424245 + ORR1A2 LTR MaLR 1 178 -149 1 1364 3648 81 126 11 chr5 102113034 102113558 -50423701 - MT2B2 LTR ERVL 0 584 1 1 1364 242 254 26 66 chr5 102113652 102113728 -50423531 - ID4_ SINE ID -10 73 1 1 1364 418 255 27 9 chr5 102113910 102114021 -50423238 + L1MB5 LINE L1 5716 5828 -346 1 1364 484 234 22 45 chr5 102114021 102114155 -50423104 + B4 SINE B4 5 135 -157 1 1364 225 247 63 25 chr5 102114276 102114355 -50422904 + L1MB5 LINE L1 6072 6153 -31 1 1364 243 0 0 0 chr5 102114822 102114849 -50422410 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1364 438 163 12 24 chr5 102114873 102114970 -50422289 + B1F2 SINE Alu 14 133 -16 1 1364 1383 80 11 0 chr5 102115220 102115407 -50421852 + B2_Mm1t SINE B2 1 189 -4 1 1364 216 143 0 0 chr5 102115970 102116012 -50421247 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 1 1364 252 0 0 0 chr5 102117155 102117183 -50420076 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1364 447 206 78 0 chr5 102117441 102117543 -50419716 + B1_Mus1 SINE Alu 38 147 -1 1 1364 312 138 0 0 chr5 102118265 102118330 -50418929 + (A)n Simple_repeat Simple_repeat 1 65 0 1 1364 237 329 20 53 chr5 102118765 102118916 -50418343 + B1_Mus1 SINE Alu 3 148 0 1 1364 30 0 0 0 chr5 102118926 102118956 -50418303 + AT_rich Low_complexity Low_complexity 1 30 0 1 1364 765 263 146 68 chr5 102118973 102119203 -50418056 - MTEa LTR MaLR -15 364 107 1 1364 1228 212 142 9 chr5 102119203 102119526 -50417733 + ORR1D2 LTR MaLR 1 366 -4 1 1364 765 263 146 68 chr5 102119526 102119617 -50417642 - MTEa LTR MaLR -273 106 18 1 1364 185 0 0 39 chr5 102119838 102119864 -50417395 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1364 1164 55 0 20 chr5 102120856 102121005 -50416254 + B1_Mus2 SINE Alu 2 147 0 1 1364 442 194 73 3 chr5 102121220 102121331 -50415928 - BC1_Mm scRNA scRNA -36 116 1 1 1364 259 294 58 8 chr5 102121393 102121513 -50415746 + MIRc SINE MIR 65 190 -78 1 1364 1049 280 80 30 chr5 102121614 102121957 -50415302 - MTE2b LTR MaLR -13 408 6 1 1364 279 346 0 0 chr5 102122041 102122122 -50415137 + ID4 SINE ID 3 83 0 2 1364 677 232 0 11 chr5 102122138 102122317 -50414942 + GA-rich Low_complexity Low_complexity 4 180 0 2 1364 245 89 0 22 chr5 102122559 102122605 -50414654 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 2 1364 341 305 196 33 chr5 102122925 102123379 -50413880 - L2 LINE L2 -1034 2385 1858 2 1364 2287 89 6 61 chr5 102123379 102123725 -50413534 - ORR1A2 LTR MaLR 0 327 1 2 1364 357 267 0 0 chr5 102123895 102124011 -50413248 + GA-rich Low_complexity Low_complexity 4 119 0 2 1364 359 300 50 103 chr5 102124437 102124719 -50412540 - L1MC5 LINE L1 -25 7936 7670 2 1364 566 203 5 31 chr5 102125362 102125587 -50411672 + C-rich Low_complexity Low_complexity 1 218 0 2 1364 907 240 10 81 chr5 102125641 102125850 -50411409 - B3 SINE B2 -18 198 5 2 1364 438 108 0 0 chr5 102126157 102126222 -50411037 + (TCC)n Simple_repeat Simple_repeat 2 66 0 2 1364 252 0 0 0 chr5 102126505 102126533 -50410726 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1364 756 0 0 0 chr5 102126533 102126617 -50410642 + (GAA)n Simple_repeat Simple_repeat 1 84 0 2 1364 417 294 28 7 chr5 102126698 102126842 -50410417 - L1_Mur3 LINE L1 -429 5451 5305 2 1364 542 228 65 0 chr5 102126842 102126965 -50410294 + B1_Mur2 SINE Alu 5 135 -14 2 1364 941 152 0 6 chr5 102126965 102127137 -50410122 + GA-rich Low_complexity Low_complexity 2 172 0 2 1364 180 0 0 0 chr5 102127137 102127157 -50410102 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1364 256 346 61 0 chr5 102127207 102127421 -50409838 - L1M3 LINE L1 -845 5298 5072 2 1364 1699 173 136 3 chr5 102127421 102127775 -50409484 + MTD LTR MaLR 11 411 -8 2 1364 939 284 107 39 chr5 102127783 102128350 -50408909 - L1M3 LINE L1 -1072 5074 4444 2 1364 3149 58 8 5 chr5 102128350 102128749 -50408510 + MTB LTR MaLR 1 400 0 2 1364 939 287 131 38 chr5 102128749 102128810 -50408449 - L1M3 LINE L1 -1697 4443 4386 2 1364 500 185 9 0 chr5 102129037 102129145 -50408114 + GA-rich Low_complexity Low_complexity 2 110 0 2 1364 333 0 0 0 chr5 102129208 102129245 -50408014 + (TC)n Simple_repeat Simple_repeat 1 37 0 2 1364 309 274 52 21 chr5 102129995 102130092 -50407167 + PB1D7 SINE Alu 13 112 -8 2 1364 189 328 45 0 chr5 102130412 102130479 -50406780 - MIR SINE MIR -170 92 23 2 1364 619 250 36 103 chr5 102130940 102131157 -50406102 + ORR1E LTR MaLR 3 187 -187 2 1364 350 197 49 0 chr5 102131157 102131299 -50405960 + CT-rich Low_complexity Low_complexity 1 149 0 2 1364 417 39 0 0 chr5 102131349 102131400 -50405859 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 1364 333 240 209 20 chr5 102131402 102131555 -50405704 + ORR1E LTR MaLR 169 350 -9 2 1364 877 146 12 0 chr5 102132322 102132487 -50404772 + GA-rich Low_complexity Low_complexity 3 169 0 2 1364 208 237 0 0 chr5 102133156 102133194 -50404065 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1364 492 150 35 45 chr5 102133771 102133870 -50403389 - PB1D10 SINE Alu -7 110 16 2 1364 941 149 30 50 chr5 102133878 102134076 -50403183 - B2_Mm2 SINE B2 0 195 2 2 1364 363 269 69 28 chr5 102134369 102134514 -50402745 + B4A SINE B4 2 152 -140 2 1364 411 21 0 0 chr5 102134697 102134745 -50402514 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 2 1364 314 55 0 0 chr5 102134830 102134885 -50402374 + L1_Mus4 LINE L1 6581 6635 -1 2 1364 1258 106 0 31 chr5 102135287 102135481 -50401778 + B2_Mm2 SINE B2 1 188 -7 2 1364 336 250 0 0 chr5 102135527 102135599 -50401660 - ID4_ SINE ID 0 83 12 2 1364 275 159 48 0 chr5 102135650 102135713 -50401546 + (CACCAT)n Simple_repeat Simple_repeat 5 70 0 2 1364 795 53 19 16 chr5 102136117 102136250 -50401009 - RMER17B LTR ERVK -287 464 344 2 1364 2767 127 183 6 chr5 102136241 102136334 -50400925 - RMER6A LTR ERVK -113 643 542 2 1364 996 9 0 0 chr5 102136334 102136447 -50400812 + (TC)n Simple_repeat Simple_repeat 1 113 0 2 1364 2767 127 183 6 chr5 102136447 102136899 -50400360 - RMER6A LTR ERVK -215 541 3 2 1364 1813 90 111 7 chr5 102137402 102137672 -50399587 + RMER2 LTR ERV1 1 298 -269 2 1364 423 56 0 0 chr5 102138187 102138241 -50399018 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1364 671 232 7 21 chr5 102138283 102138424 -50398835 + RSINE1 SINE B4 5 143 -22 2 1364 37 23 0 0 chr5 102138445 102138489 -50398770 + AT_rich Low_complexity Low_complexity 1 44 0 2 1364 355 240 0 51 chr5 102138596 102138675 -50398584 + ID4 SINE ID 9 83 0 2 1364 2566 212 168 63 chr5 102138881 102139736 -50397523 + RMER17B LTR ERVK 1 945 -13 2 1364 1383 170 119 46 chr5 102139813 102139983 -50397276 + ORR1D1 LTR MaLR 3 165 -209 2 1364 1179 90 0 0 chr5 102139983 102140149 -50397110 + (TC)n Simple_repeat Simple_repeat 2 167 0 2 1364 1383 170 119 46 chr5 102140149 102140192 -50397067 + ORR1D1 LTR MaLR 166 224 -150 2 1364 231 36 0 0 chr5 102140192 102140220 -50397039 + (CCTG)n Simple_repeat Simple_repeat 3 30 0 2 1364 1383 170 119 46 chr5 102140220 102140350 -50396909 + ORR1D1 LTR MaLR 225 372 -2 2 1364 291 157 0 0 chr5 102140350 102140401 -50396858 + (ATG)n Simple_repeat Simple_repeat 3 53 0 2 1364 496 77 13 13 chr5 102140445 102140524 -50396735 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1364 668 296 62 86 chr5 102140529 102140821 -50396438 - B4A SINE B4 -6 286 2 2 1364 666 239 29 0 chr5 102140860 102140998 -50396261 - B1F SINE Alu -7 142 1 2 1364 214 26 25 50 chr5 102141568 102141608 -50395651 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1364 1131 59 0 0 chr5 102141608 102141744 -50395515 - B1_Mus2 SINE Alu -10 137 2 2 1364 818 159 40 7 chr5 102142152 102142304 -50394955 - B3 SINE B2 -1 215 59 2 1364 1086 58 66 0 chr5 102143031 102143168 -50394091 + B1_Mm SINE Alu 2 147 0 2 1364 1100 225 136 10 chr5 102143356 102143659 -50393600 + ORR1D1 LTR MaLR 5 374 0 2 1364 301 292 52 0 chr5 102143676 102143772 -50393487 + RSINE1 SINE B4 1 101 -64 2 1364 609 40 0 0 chr5 102143776 102143852 -50393407 + (TC)n Simple_repeat Simple_repeat 1 76 0 2 1364 556 283 23 8 chr5 102143990 102144118 -50393141 - RSINE1 SINE B4 -33 132 3 2 1364 1208 49 0 0 chr5 102144225 102144367 -50392892 + B1_Mus1 SINE Alu 1 142 -6 2 1364 461 17 17 0 chr5 102144369 102144427 -50392832 + (GAAA)n Simple_repeat Simple_repeat 3 61 0 2 1364 315 234 110 84 chr5 102144727 102144881 -50392378 + MIRb SINE MIR 22 179 -89 2 1364 464 337 44 80 chr5 102145678 102145952 -50391307 + LTR48B LTR ERV1 381 644 0 2 1364 445 286 56 28 chr5 102145992 102146136 -50391123 + B1F SINE Alu 2 149 0 2 1364 212 339 34 84 chr5 102146342 102146376 -50390883 + B4 SINE B4 57 84 -208 2 1364 396 307 9 22 chr5 102146376 102146504 -50390755 + PB1D7 SINE Alu 1 125 -22 2 1364 657 200 0 0 chr5 102147006 102147322 -50389937 + (CA)n Simple_repeat Simple_repeat 1 316 0 2 1364 909 170 14 7 chr5 102148044 102148192 -50389067 + B1_Mur4 SINE Alu 1 149 -1 2 1364 301 282 12 97 chr5 102148201 102148366 -50388893 - L1MCa LINE L1 -4550 1958 1808 2 1364 244 277 117 0 chr5 102148907 102149001 -50388258 + MLT2D LTR ERVL 1 105 -309 2 1364 558 287 32 0 chr5 102149115 102149272 -50387987 - RSINE1 SINE B4 0 165 4 2 1364 574 316 32 23 chr5 102149274 102149494 -50387765 - B4A SINE B4 -63 229 8 2 1364 621 283 179 17 chr5 102150400 102150634 -50386625 + MLT2D LTR ERVL 81 352 -62 2 1364 213 304 0 0 chr5 102150653 102150709 -50386550 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 2 1364 198 103 0 0 chr5 102150750 102150779 -50386480 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 2 1364 387 0 0 0 chr5 102151118 102151161 -50386098 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1364 25 0 0 0 chr5 102151732 102151757 -50385502 + AT_rich Low_complexity Low_complexity 1 25 0 2 1364 1093 227 92 23 chr5 102151757 102152063 -50385196 - Lx6 LINE L1 -11 7449 7123 2 1364 961 204 56 0 chr5 102152489 102152685 -50384574 - B3 SINE B2 -8 208 2 2 1364 30 0 0 0 chr5 102152841 102152871 -50384388 + AT_rich Low_complexity Low_complexity 1 30 0 2 1364 448 219 142 40 chr5 102152975 102153151 -50384108 - B3A SINE B2 -1 197 4 2 1364 234 290 0 14 chr5 102153155 102153225 -50384034 + T-rich Low_complexity Low_complexity 3 71 0 2 1364 437 270 10 0 chr5 102153236 102153336 -50383923 - RSINE1 SINE B4 -31 134 34 2 1364 210 118 0 0 chr5 102153809 102153843 -50383416 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1364 414 259 42 60 chr5 102153843 102154011 -50383248 - RSINE1 SINE B4 0 165 1 2 1364 233 271 169 14 chr5 102154034 102154105 -50383154 + ID2 SINE ID 2 83 0 2 1364 292 171 56 22 chr5 102155796 102155886 -50381373 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 2 1364 1175 37 0 0 chr5 102156126 102156261 -50380998 + B1_Mm SINE Alu 1 135 -12 2 1364 272 48 24 0 chr5 102156263 102156305 -50380954 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1364 287 351 58 35 chr5 102156604 102156778 -50380481 - ORR1E LTR MaLR -174 185 8 2 1364 2284 44 30 10 chr5 102157069 102157394 -50379865 + L1Md_F3 LINE L1 6272 6584 0 2 1364 1269 142 24 5 chr5 102157394 102157607 -50379652 + MTC LTR MaLR 203 419 -2 2 1364 359 315 52 50 chr5 102158179 102158355 -50378904 - MIR SINE MIR -61 201 34 2 1364 222 150 0 0 chr5 102158702 102158742 -50378517 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1364 3140 55 17 17 chr5 102159639 102160046 -50377213 + MTB_Mm LTR MaLR 1 407 0 2 1364 1229 244 65 10 chr5 102160192 102160498 -50376761 + MTE2b LTR MaLR 48 370 -9 2 1364 621 147 25 17 chr5 102160612 102160730 -50376529 + PB1D9 SINE Alu 2 120 0 2 1364 1196 68 0 0 chr5 102160733 102160880 -50376379 + B1_Mus2 SINE Alu 1 147 0 2 1364 731 299 118 20 chr5 102161263 102161474 -50375785 - Tigger7 DNA MER2_type -2159 332 94 2 1364 180 0 0 0 chr5 102161474 102161494 -50375765 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1364 731 299 118 20 chr5 102161494 102161579 -50375680 - Tigger7 DNA MER2_type -2398 93 8 2 1364 279 311 56 89 chr5 102161585 102161765 -50375494 + MIR SINE MIR 56 229 -39 3 1364 377 244 6 0 chr5 102161993 102162169 -50375090 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 1364 620 319 84 44 chr5 102162178 102162445 -50374814 - B4A SINE B4 0 292 37 3 1364 1385 79 21 10 chr5 102162445 102162637 -50374622 - B2_Mm2 SINE B2 -1 194 1 3 1364 620 330 77 53 chr5 102162637 102162674 -50374585 - B4A SINE B4 -256 36 1 3 1364 5314 44 3 2 chr5 102162688 102163327 -50373932 - L1Md_F2 LINE L1 0 6582 5943 3 1364 878 248 14 24 chr5 102163345 102163556 -50373703 - B3 SINE B2 -7 209 1 3 1364 634 169 24 48 chr5 102163735 102163859 -50373400 + B1_Mur2 SINE Alu 25 145 -4 3 1364 537 302 78 12 chr5 102164051 102164249 -50373010 - MLT1A0 LTR MaLR -3 405 156 3 1364 4478 93 10 2 chr5 102164249 102164854 -50372405 + Lx3B LINE L1 6360 6969 -4 3 1364 411 322 91 101 chr5 102164854 102165062 -50372197 - MLT1A0 LTR MaLR -207 201 3 3 1364 376 291 37 15 chr5 102165329 102165465 -50371794 + MER53 DNA hAT 25 163 -30 3 1364 350 282 70 32 chr5 102165892 102166055 -50371204 + L1MA7 LINE L1 5668 5851 -449 3 1364 1087 284 73 47 chr5 102166052 102166749 -50370510 + Lx7 LINE L1 5369 6109 -1587 3 1364 211 191 0 45 chr5 102166749 102166793 -50370466 + polypurine Low_complexity Low_complexity 2 43 0 3 1364 1329 245 62 18 chr5 102166837 102167212 -50370047 - MTD LTR MaLR -14 405 1 3 1364 1438 73 11 0 chr5 102167295 102167486 -50369773 + B2_Mm1t SINE B2 1 193 0 3 1364 328 168 28 34 chr5 102168052 102168231 -50369028 + (TG)n Simple_repeat Simple_repeat 2 179 0 3 1364 487 196 39 12 chr5 102168252 102168660 -50368599 + (TG)n Simple_repeat Simple_repeat 1 419 0 3 1364 432 214 23 11 chr5 102168693 102168868 -50368391 + (TG)n Simple_repeat Simple_repeat 2 178 0 3 1364 375 267 164 16 chr5 102168871 102169054 -50368205 - B4A SINE B4 0 292 83 3 1364 21 0 0 0 chr5 102169182 102169203 -50368056 + AT_rich Low_complexity Low_complexity 1 21 0 3 1364 1428 80 5 16 chr5 102169211 102169402 -50367857 + B2_Mm2 SINE B2 1 189 -6 3 1364 257 280 34 86 chr5 102169403 102169520 -50367739 + MIR SINE MIR 32 142 -120 3 1364 289 239 128 25 chr5 102169552 102169647 -50367612 + PB1D7 SINE Alu 2 109 -11 3 1364 1427 147 31 80 chr5 102169645 102169933 -50367326 + ORR1C1 LTR MaLR 15 288 -90 3 1364 1771 256 46 42 chr5 102170139 102170657 -50366602 - RMER5 LTR ERV1 -2 532 13 3 1364 203 375 0 35 chr5 102170727 102170843 -50366416 + L2 LINE L2 2485 2596 -823 3 1364 342 0 0 0 chr5 102170843 102170881 -50366378 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1364 326 301 0 0 chr5 102171013 102171096 -50366163 + ID4 SINE ID 1 83 0 3 1364 3604 99 14 8 chr5 102171961 102172468 -50364791 - Lx LINE L1 -1 6653 6144 3 1364 6947 72 0 10 chr5 102172469 102173362 -50363897 - L1Md_F2 LINE L1 -24 6558 5675 3 1364 1006 71 0 0 chr5 102173360 102173487 -50363772 - L1_Mus4 LINE L1 -479 6157 6031 3 1364 429 310 67 39 chr5 102173583 102173791 -50363468 + MLT1B LTR MaLR 98 311 -79 3 1364 1836 280 59 7 chr5 102173818 102174362 -50362897 + Lx9 LINE L1 6277 6848 -796 3 1364 2747 57 8 3 chr5 102174369 102174723 -50362536 + MTB_Mm LTR MaLR 1 356 -51 3 1364 578 273 116 20 chr5 102175701 102175899 -50361360 - ID_B1 SINE B4 -6 218 2 3 1364 312 91 0 0 chr5 102176041 102176085 -50361174 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1364 1084 56 0 83 chr5 102176461 102176618 -50360641 - B1_Mm SINE Alu 0 147 4 3 1364 307 268 0 12 chr5 102176706 102176789 -50360470 + Lx2B LINE L1 5709 5790 -1210 3 1364 734 212 6 0 chr5 102176789 102176959 -50360300 + GA-rich Low_complexity Low_complexity 3 173 0 3 1364 271 269 196 48 chr5 102176960 102177386 -50359873 + L1MA4 LINE L1 5814 6300 0 3 1364 330 221 22 51 chr5 102177929 102178067 -50359192 + L1_Mur2 LINE L1 867 1000 -6728 3 1364 306 218 7 57 chr5 102178067 102178208 -50359051 + ORR1B1-int LTR MaLR 621 754 -755 3 1364 421 182 51 117 chr5 102178083 102178100 -50359159 + MT2B LTR ERVL 151 158 -443 3 1364 1073 68 7 13 chr5 102178100 102178249 -50359010 + B1_Mus1 SINE Alu 1 148 0 3 1364 14335 170 37 103 chr5 102178256 102181891 -50355368 + L1_Mur2 LINE L1 939 4274 -1606 3 1364 234 0 0 0 chr5 102181891 102181917 -50355342 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1364 14335 164 35 109 chr5 102181917 102182234 -50355025 + L1_Mur2 LINE L1 4275 4628 -1252 3 1364 2744 255 122 16 chr5 102182234 102183238 -50354021 + Lx6 LINE L1 5983 7324 -136 3 1364 654 146 0 0 chr5 102183238 102183348 -50353911 + (TTC)n Simple_repeat Simple_repeat 1 110 0 3 1364 1141 62 0 40 chr5 102183497 102183649 -50353610 - B1_Mus1 SINE Alu 0 148 3 3 1364 3606 147 78 43 chr5 102184154 102184846 -50352413 + RMER6D LTR ERVK 1 716 -4 3 1364 541 267 45 56 chr5 102185337 102185535 -50351724 - B3A SINE B2 0 198 3 3 1364 3617 18 0 0 chr5 102185772 102186168 -50351091 - MTA_Mm LTR MaLR 0 396 1 3 1364 300 53 0 0 chr5 102186491 102186529 -50350730 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 3 1364 185 132 0 26 chr5 102186525 102186564 -50350695 + GA-rich Low_complexity Low_complexity 3 40 0 3 1364 359 320 62 17 chr5 102186564 102186742 -50350517 - ORR1E LTR MaLR -167 192 7 3 1364 464 229 62 41 chr5 102186951 102187097 -50350162 - B1F2 SINE Alu 0 149 1 3 1364 244 317 82 48 chr5 102187754 102187970 -50349289 - MIR SINE MIR -29 233 17 3 1364 396 281 36 22 chr5 102188179 102188317 -50348942 + B1F1 SINE Alu 2 141 -8 3 1364 288 130 0 0 chr5 102188343 102188389 -50348870 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1364 339 241 55 18 chr5 102188391 102188556 -50348703 + (CCCA)n Simple_repeat Simple_repeat 1 171 0 3 1364 4911 214 71 43 chr5 102189012 102190230 -50347029 - Lx9 LINE L1 0 7644 6393 3 1364 2007 161 30 35 chr5 102190230 102190602 -50346657 - ORR1C1 LTR MaLR 0 378 9 3 1364 268 308 0 0 chr5 102190602 102190680 -50346579 - Lx9 LINE L1 -1255 6389 6312 3 1364 231 164 73 110 chr5 102191379 102191461 -50345798 + LTR88b LTR Gypsy? 242 320 -517 3 1364 265 214 0 0 chr5 102191704 102191760 -50345499 - MT2A LTR ERVL 0 601 546 3 1364 523 149 9 9 chr5 102191760 102191868 -50345391 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 3 1364 1645 180 227 18 chr5 102191873 102192257 -50345002 - MT2A LTR ERVL -69 464 1 3 1364 469 258 120 8 chr5 102193158 102193291 -50343968 - RSINE1 SINE B4 -2 163 16 3 1364 22 80 0 0 chr5 102194408 102194458 -50342801 + GC_rich Low_complexity Low_complexity 1 50 0 3 1364 23 0 0 0 chr5 102194518 102194541 -50342718 + GC_rich Low_complexity Low_complexity 1 23 0 3 1364 314 276 78 48 chr5 102195291 102195394 -50341865 + ID_B1 SINE B4 88 193 -31 3 1364 283 246 219 41 chr5 102197134 102197257 -50340002 - PB1D10 SINE Alu -2 145 1 3 1364 742 276 109 10 chr5 102197704 102197997 -50339262 + Lx7 LINE L1 6947 7268 -428 3 1364 359 162 76 57 chr5 102198021 102198126 -50339133 + Lx7 LINE L1 7590 7696 0 3 1364 180 0 0 0 chr5 102201041 102201061 -50336198 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1364 507 206 72 36 chr5 102201297 102201408 -50335851 - ID_B1 SINE B4 -3 221 107 3 1364 257 385 24 0 chr5 102201496 102201579 -50335680 + AluG_3 SINE Alu 137 221 -90 3 1364 692 276 98 11 chr5 102202467 102202731 -50334528 - MLT1D LTR MaLR -8 497 211 3 1364 245 265 176 0 chr5 102203043 102203111 -50334148 - MLT1A LTR MaLR -7 367 288 3 1364 380 291 65 46 chr5 102203306 102203522 -50333737 - L1ME1 LINE L1 -62 6117 5898 3 1364 293 211 41 53 chr5 102203524 102203694 -50333565 + (TATG)n Simple_repeat Simple_repeat 4 171 0 3 1364 208 235 44 56 chr5 102203809 102203989 -50333270 + (TATG)n Simple_repeat Simple_repeat 3 180 0 3 1364 270 292 11 33 chr5 102204428 102204520 -50332739 - ID_B1 SINE B4 -1 223 134 3 1364 213 296 269 0 chr5 102204442 102204550 -50332709 - B1F SINE Alu -12 137 1 3 1364 424 295 28 23 chr5 102204725 102204900 -50332359 - L1ME1 LINE L1 -453 5709 5536 3 1364 229 191 111 0 chr5 102204984 102205047 -50332212 - PB1D7 SINE Alu -18 102 33 3 1364 342 265 91 28 chr5 102205090 102205298 -50331961 - L1ME1 LINE L1 -754 5425 5206 3 1364 386 242 152 32 chr5 102205416 102205574 -50331685 - L1ME1 LINE L1 -901 5245 5069 3 1364 188 216 20 0 chr5 102206131 102206182 -50331077 + CT-rich Low_complexity Low_complexity 4 55 0 3 1364 205 171 0 0 chr5 102206893 102206934 -50330325 + T-rich Low_complexity Low_complexity 4 44 0 3 1364 363 308 145 36 chr5 102206937 102207075 -50330184 - RSINE1 SINE B4 -6 159 7 3 1364 703 281 131 46 chr5 102207712 102207838 -50329421 - MTD LTR MaLR -14 405 270 3 1364 369 62 0 0 chr5 102207838 102207886 -50329373 + (CACGC)n Simple_repeat Simple_repeat 4 51 0 3 1364 703 281 131 46 chr5 102207886 102207964 -50329295 - MTD LTR MaLR -150 269 182 3 1364 1737 179 61 19 chr5 102207964 102208323 -50328936 - ORR1D1 LTR MaLR 0 374 1 3 1364 703 281 131 46 chr5 102208323 102208490 -50328769 - MTD LTR MaLR -238 181 1 3 1364 330 295 69 15 chr5 102210213 102210344 -50326915 + B1F1 SINE Alu 4 141 -8 3 1364 564 15 0 0 chr5 102210786 102210851 -50326408 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1364 216 0 0 0 chr5 102211891 102211915 -50325344 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 1364 312 114 0 0 chr5 102211915 102211952 -50325307 - HAL1-3A_ME LINE L1 -845 2013 1977 3 1364 468 270 174 5 chr5 102212146 102212336 -50324923 - MIRb SINE MIR 0 268 47 3 1364 571 234 101 20 chr5 102214067 102214215 -50323044 + MLT1A1 LTR MaLR 248 407 -1 3 1364 23 0 0 0 chr5 102214858 102214881 -50322378 + AT_rich Low_complexity Low_complexity 1 23 0 3 1364 235 324 121 6 chr5 102214948 102215122 -50322137 + L1M4c LINE L1 1553 1746 -4638 3 1364 773 312 160 39 chr5 102215292 102215611 -50321648 + L1M4c LINE L1 2348 2695 -3684 3 1364 423 0 0 0 chr5 102215611 102215658 -50321601 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1364 773 312 160 39 chr5 102215658 102216793 -50320466 + L1M4c LINE L1 2696 3977 -2402 3 1364 1156 222 63 82 chr5 102216918 102217330 -50319929 + Lx9 LINE L1 6139 6542 -1102 3 1364 1241 41 7 0 chr5 102217515 102217662 -50319597 + B1_Mus1 SINE Alu 1 148 0 3 1364 216 86 0 0 chr5 102217662 102217697 -50319562 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1364 397 260 80 0 chr5 102217717 102217817 -50319442 + B3A SINE B2 65 172 -26 3 1364 279 0 0 0 chr5 102217825 102217856 -50319403 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1364 253 243 161 45 chr5 102217916 102218028 -50319231 + L1M1 LINE L1 5663 5787 -513 4 1364 189 0 0 0 chr5 102218563 102218584 -50318675 + (CAGG)n Simple_repeat Simple_repeat 4 24 0 4 1364 357 236 0 0 chr5 102219012 102219118 -50318141 + (CA)n Simple_repeat Simple_repeat 1 106 0 4 1364 1334 80 29 27 chr5 102219354 102219585 -50317674 + B2_Mm2 SINE B2 2 216 0 4 1364 440 321 32 47 chr5 102219619 102219897 -50317362 + MTEb LTR MaLR 1 274 -105 4 1364 315 223 8 145 chr5 102222163 102222294 -50314965 + PB1D10 SINE Alu 4 116 -1 4 1364 309 89 0 0 chr5 102224493 102224538 -50312721 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1364 447 222 41 119 chr5 102224556 102224750 -50312509 - B4A SINE B4 -2 290 112 4 1364 620 275 14 0 chr5 102225376 102225514 -50311745 - B1_Mur1 SINE Alu 0 149 10 4 1364 307 325 99 76 chr5 102225514 102225588 -50311671 - ID_B1 SINE B4 0 224 9 4 1364 220 250 0 0 chr5 102225648 102225696 -50311563 + PB1D7 SINE Alu 73 120 0 4 1364 263 268 0 0 chr5 102226697 102226753 -50310506 + PB1D10 SINE Alu 46 101 -16 4 1364 213 154 0 0 chr5 102226845 102226884 -50310375 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1364 34 55 0 0 chr5 102227816 102227871 -50309388 + AT_rich Low_complexity Low_complexity 1 55 0 4 1364 530 183 7 83 chr5 102228228 102228373 -50308886 + B3 SINE B2 1 216 0 4 1364 778 225 19 0 chr5 102229196 102229356 -50307903 - B3 SINE B2 -52 164 2 4 1364 371 113 16 0 chr5 102230623 102230685 -50306574 + (TCC)n Simple_repeat Simple_repeat 1 63 0 4 1364 370 197 0 27 chr5 102231415 102231488 -50305771 - ORR1C2 LTR MaLR -283 101 31 4 1364 327 65 0 0 chr5 102231646 102231692 -50305567 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1364 225 0 0 0 chr5 102231692 102231716 -50305543 + (GA)n Simple_repeat Simple_repeat 1 25 0 4 1364 977 235 176 34 chr5 102233143 102233495 -50303764 - MTD LTR MaLR -14 405 4 4 1364 1358 179 127 29 chr5 102233515 102233831 -50303428 - ORR1C2 LTR MaLR -14 370 24 4 1364 402 266 14 34 chr5 102233916 102234098 -50303161 - L1_Rod LINE L1 -811 5036 4869 4 1364 285 271 96 24 chr5 102235030 102235155 -50302104 + MIR SINE MIR 112 245 -17 4 1365 240 250 0 45 chr5 102238957 102239024 -50298235 - LTR48 LTR ERV1 -559 228 165 4 1365 269 305 83 17 chr5 102239425 102239545 -50297714 - L4 LINE RTE -204 1825 1698 4 1365 288 0 0 0 chr5 102239552 102239584 -50297675 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 4 1365 937 147 15 0 chr5 102239584 102239720 -50297539 - B1_Mur4 SINE Alu -12 138 1 4 1365 189 328 0 0 chr5 102240413 102240471 -50296788 - L4 LINE RTE -1584 445 388 4 1365 428 333 0 0 chr5 102240795 102240900 -50296359 + PB1D10 SINE Alu 1 105 -12 4 1365 627 171 8 49 chr5 102241274 102241397 -50295862 + B1_Mur4 SINE Alu 30 147 -3 4 1365 435 236 9 54 chr5 102241723 102241835 -50295424 - Lx9 LINE L1 -595 7049 6943 4 1365 422 257 9 18 chr5 102241851 102241962 -50295297 + Lx9 LINE L1 7073 7182 -462 4 1365 403 293 41 41 chr5 102243007 102243153 -50294106 + RSINE1 SINE B4 3 148 -17 4 1365 225 301 65 95 chr5 102244042 102244097 -50293162 - B4A SINE B4 -39 253 91 4 1365 525 232 0 9 chr5 102244097 102244210 -50293049 - PB1D10 SINE Alu 0 117 6 4 1365 1494 57 0 25 chr5 102244217 102244414 -50292845 - B2_Mm2 SINE B2 -3 192 1 4 1365 36 53 0 0 chr5 102244494 102244551 -50292708 + AT_rich Low_complexity Low_complexity 1 57 0 4 1365 246 326 11 55 chr5 102245443 102245534 -50291725 - MER58A DNA MER1_type -134 90 4 4 1365 185 244 233 16 chr5 102245669 102245798 -50291461 - L2a LINE L2 -253 3173 3017 4 1365 324 280 82 13 chr5 102248055 102248214 -50289045 - L1M5 LINE L1 -3245 2901 2732 4 1365 220 221 15 0 chr5 102248722 102248790 -50288469 + A-rich Low_complexity Low_complexity 3 71 0 4 1365 270 0 0 0 chr5 102249367 102249397 -50287862 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1365 459 0 0 0 chr5 102249397 102249447 -50287812 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1365 452 240 83 141 chr5 102249527 102249648 -50287611 - B1F SINE Alu -29 120 4 4 1365 213 338 15 0 chr5 102251093 102251161 -50286098 - ID4 SINE ID 0 83 15 4 1365 461 292 23 8 chr5 102253894 102254025 -50283234 + ID_B1 SINE B4 84 216 -8 4 1365 323 327 18 12 chr5 102254302 102254469 -50282790 - L1M5 LINE L1 -413 5766 5599 4 1365 409 284 102 54 chr5 102254725 102255078 -50282181 + RMER15-int LTR ERVL 232 601 -4398 4 1365 316 164 0 121 chr5 102255095 102255178 -50282081 + L1M4c LINE L1 673 745 -5639 4 1365 272 211 193 0 chr5 102255187 102255296 -50281963 + RMER15-int LTR ERVL 652 781 -4218 4 1365 912 209 146 146 chr5 102255487 102255891 -50281368 + MTD LTR MaLR 14 417 -2 4 1365 317 227 72 0 chr5 102256339 102256436 -50280823 + PB1D9 SINE Alu 2 105 -15 4 1365 1772 170 3 25 chr5 102256512 102256837 -50280422 + MTC LTR MaLR 3 320 -101 4 1365 331 113 16 16 chr5 102257425 102257488 -50279771 + (AGGGGG)n Simple_repeat Simple_repeat 6 68 0 4 1365 485 246 74 7 chr5 102257505 102257640 -50279619 - B1F SINE Alu 0 149 6 4 1365 978 41 0 0 chr5 102259747 102259868 -50277391 - B1_Mus1 SINE Alu 0 148 28 4 1365 364 308 8 24 chr5 102260712 102260835 -50276424 + Charlie1a DNA MER1_type 538 658 -797 4 1365 192 97 0 0 chr5 102261082 102261113 -50276146 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 1365 233 330 107 0 chr5 102261161 102261273 -50275986 + Charlie1a DNA MER1_type 1056 1179 -276 4 1365 706 230 58 19 chr5 102261275 102261405 -50275854 + RSINE1 SINE B4 3 136 -29 4 1365 258 32 0 0 chr5 102261405 102261436 -50275823 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1365 706 230 58 19 chr5 102261436 102261460 -50275799 + RSINE1 SINE B4 137 163 -2 4 1365 337 322 16 0 chr5 102261472 102261593 -50275666 + (CA)n Simple_repeat Simple_repeat 1 123 0 4 1365 189 121 0 0 chr5 102263801 102263834 -50273425 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1365 3315 37 40 0 chr5 102266276 102266681 -50270578 + BGLII LTR ERVK 1 421 0 4 1365 591 189 134 51 chr5 102266729 102267151 -50270108 + RMER3D-int LTR ERVK 489 1093 -6313 4 1365 1719 169 134 13 chr5 102267178 102267660 -50269599 + RMER3D-int LTR ERVK 1014 1533 -1309 4 1365 651 149 36 29 chr5 102267696 102267834 -50269425 + RMER3D-int LTR ERVK 1541 1679 -1163 4 1365 1155 84 0 0 chr5 102267868 102268010 -50269249 - B1_Mus2 SINE Alu -5 142 1 4 1365 3318 202 50 37 chr5 102268011 102268934 -50268325 + RMER3D-int LTR ERVK 1907 2841 -1 4 1365 2847 41 89 13 chr5 102268935 102269326 -50267933 + BGLII LTR ERVK 1 421 0 4 1365 462 252 16 32 chr5 102269326 102269449 -50267810 - RSINE1 SINE B4 0 165 45 4 1365 430 331 113 67 chr5 102269483 102269872 -50267387 - L1M2 LINE L1 -533 5770 5364 4 1365 234 314 116 65 chr5 102270047 102270153 -50267106 - L1M2 LINE L1 -971 5172 5077 4 1365 599 169 16 71 chr5 102270153 102270280 -50266979 - PB1D9 SINE Alu 0 120 1 4 1365 234 314 116 65 chr5 102270280 102270449 -50266810 - L1M2 LINE L1 -1067 5076 4883 4 1365 490 314 6 33 chr5 102270539 102270766 -50266493 - L1M2 LINE L1 -1479 4664 4441 4 1365 250 318 92 23 chr5 102271013 102271100 -50266159 + MTD LTR MaLR 9 101 -318 4 1365 255 308 60 30 chr5 102271533 102271667 -50265592 - MIRb SINE MIR -63 205 68 4 1365 492 18 0 0 chr5 102274784 102274841 -50262418 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1365 1286 173 32 154 chr5 102276438 102276807 -50260452 + ORR1D1 LTR MaLR 47 370 -4 4 1365 374 272 11 32 chr5 102279500 102279595 -50257664 + RSINE1 SINE B4 12 104 -61 4 1365 252 316 84 0 chr5 102279993 102280088 -50257171 + PB1D10 SINE Alu 5 107 -10 4 1365 348 24 0 0 chr5 102282245 102282286 -50254973 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1365 1963 147 69 83 chr5 102282360 102282783 -50254476 + MTD LTR MaLR 1 417 -2 4 1365 472 276 86 15 chr5 102282963 102283117 -50254142 - B3 SINE B2 -19 197 33 4 1365 824 278 89 86 chr5 102283750 102284109 -50253150 + MTE2a LTR MaLR 3 362 -17 4 1365 441 0 0 0 chr5 102285360 102285409 -50251850 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 4 1365 403 288 76 0 chr5 102285681 102285799 -50251460 + B1F SINE Alu 1 127 -22 4 1365 1212 29 0 0 chr5 102285854 102285991 -50251268 + B1_Mm SINE Alu 5 141 -6 4 1365 405 0 0 0 chr5 102286451 102286496 -50250763 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1365 615 246 34 51 chr5 102286497 102286673 -50250586 - B3A SINE B2 -25 173 1 4 1365 1399 93 0 10 chr5 102288797 102288958 -50248301 + B2_Mm2 SINE B2 2 162 -33 4 1365 180 0 0 0 chr5 102288958 102288978 -50248281 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1365 1399 93 0 10 chr5 102288978 102289012 -50248247 + B2_Mm2 SINE B2 163 194 -1 4 1365 1631 43 0 0 chr5 102289190 102289376 -50247883 - B2_Mm1t SINE B2 -7 186 1 4 1365 231 325 26 0 chr5 102293231 102293308 -50243951 + Charlie9 DNA MER1_type 2 80 -2677 4 1365 182 273 62 38 chr5 102293703 102293783 -50243476 - L2 LINE L2 -1340 2079 1998 4 1365 1621 21 0 54 chr5 102294414 102294617 -50242642 - B2_Mm1a SINE B2 0 193 2 4 1365 493 241 70 58 chr5 102295401 102295573 -50241686 + MER44B DNA MER2_type 318 491 -59 4 1365 466 287 80 25 chr5 102297700 102297900 -50239359 - B4A SINE B4 0 292 82 4 1365 1370 136 91 33 chr5 102297890 102298164 -50239095 + ORR1A4 LTR MaLR 32 321 -8 4 1365 296 273 26 13 chr5 102298216 102298294 -50238965 - B4A SINE B4 -213 79 1 4 1365 777 242 119 14 chr5 102298353 102298689 -50238570 + MTD LTR MaLR 1 414 -5 4 1365 428 235 190 0 chr5 102300308 102300487 -50236772 - ID_B1 SINE B4 -7 217 5 4 1365 237 98 0 0 chr5 102301472 102301513 -50235746 + (TGAG)n Simple_repeat Simple_repeat 4 44 0 4 1365 213 380 18 9 chr5 102302349 102302463 -50234796 + MIRb SINE MIR 88 202 -66 4 1365 716 225 98 0 chr5 102303510 102303683 -50233576 - B3 SINE B2 -25 191 2 4 1365 450 253 17 5 chr5 102303997 102304120 -50233139 + B4A SINE B4 109 233 -59 4 1365 180 0 0 0 chr5 102305065 102305085 -50232174 + (CAA)n Simple_repeat Simple_repeat 1 20 0 4 1365 459 220 40 0 chr5 102308073 102308173 -50229086 - B1F2 SINE Alu 0 149 46 4 1365 1080 78 0 0 chr5 102308599 102308740 -50228519 - B2_Mm2 SINE B2 -51 144 4 4 1365 26 50 0 0 chr5 102308764 102308804 -50228455 + AT_rich Low_complexity Low_complexity 1 40 0 5 1365 184 231 26 0 chr5 102308820 102308898 -50228361 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1365 242 261 96 15 chr5 102310568 102310704 -50226555 - L1MA7 LINE L1 -3 6288 6142 5 1365 226 328 87 11 chr5 102310821 102311006 -50226253 - L1MA7 LINE L1 -327 5964 5766 5 1365 225 260 121 51 chr5 102311174 102311327 -50225932 - MIR SINE MIR -19 243 21 5 1365 231 342 45 27 chr5 102312490 102312601 -50224658 + LTR16A LTR ERVL 339 451 0 5 1365 306 0 0 0 chr5 102312899 102312933 -50224326 + (TC)n Simple_repeat Simple_repeat 2 35 0 5 1365 348 275 64 45 chr5 102313308 102313464 -50223795 + MER44A DNA MER2_type 7 165 -174 5 1365 21 71 0 0 chr5 102314680 102314722 -50222537 + AT_rich Low_complexity Low_complexity 1 42 0 5 1365 644 248 113 53 chr5 102314975 102315294 -50221965 - L1MA4 LINE L1 -362 5938 5601 5 1365 445 219 30 30 chr5 102315295 102315394 -50221865 - PB1D9 SINE Alu -21 99 1 5 1365 201 147 0 0 chr5 102315394 102315428 -50221831 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 5 1365 252 344 83 19 chr5 102315496 102315653 -50221606 - MER5A DNA MER1_type -14 175 9 5 1365 332 185 38 57 chr5 102315607 102315700 -50221559 + B1F SINE Alu 29 148 -1 5 1365 713 239 189 25 chr5 102316515 102316875 -50220384 + Lx7 LINE L1 7278 7696 0 5 1365 332 316 26 26 chr5 102319156 102319273 -50217986 - PB1D10 SINE Alu 0 117 1 5 1365 2069 221 56 14 chr5 102320103 102320604 -50216655 + RLTR11A2 LTR ERVK 6 527 0 5 1365 466 163 356 15 chr5 102321228 102321409 -50215850 - MTD LTR MaLR -176 245 6 5 1365 228 185 19 0 chr5 102324227 102324281 -50212978 + A-rich Low_complexity Low_complexity 2 56 0 5 1365 232 255 0 0 chr5 102324655 102324706 -50212553 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1365 236 283 17 0 chr5 102324919 102324979 -50212280 + LTR40c LTR ERVL 365 425 -40 5 1365 411 183 85 0 chr5 102325671 102325753 -50211506 + ID_B1 SINE B4 126 214 -10 5 1365 1077 90 7 0 chr5 102326549 102326694 -50210565 + B1_Mus1 SINE Alu 2 147 -1 5 1365 358 65 16 16 chr5 102326694 102326757 -50210502 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 5 1365 221 320 48 48 chr5 102326889 102326994 -50210265 - MIRb SINE MIR -52 216 112 5 1365 207 0 0 0 chr5 102327095 102327118 -50210141 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1365 1006 67 96 0 chr5 102327118 102327253 -50210006 - B1_Mus1 SINE Alu 0 148 1 5 1365 314 211 154 54 chr5 102327640 102327770 -50209489 - L1MEg LINE L1 -4100 1984 1842 5 1365 231 36 0 0 chr5 102327770 102327798 -50209461 + (TTCTC)n Simple_repeat Simple_repeat 2 29 0 5 1365 330 26 0 0 chr5 102327799 102327838 -50209421 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 5 1365 195 42 0 0 chr5 102328461 102328485 -50208774 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1365 522 227 270 44 chr5 102328525 102328751 -50208508 - B4A SINE B4 -14 278 2 5 1365 544 137 20 0 chr5 102331189 102331291 -50205968 + CT-rich Low_complexity Low_complexity 1 104 0 5 1365 661 205 8 52 chr5 102331291 102331425 -50205834 - B1_Mur4 SINE Alu -21 129 2 5 1365 719 242 80 25 chr5 102332218 102332417 -50204842 + RMER5 LTR ERV1 323 532 -2 5 1365 531 225 6 10 chr5 102332769 102332889 -50204370 + B1_Mur4 SINE Alu 11 128 -21 5 1365 290 211 75 43 chr5 102332893 102332987 -50204272 + PB1D9 SINE Alu 5 101 -19 5 1365 321 178 125 17 chr5 102333881 102334001 -50203258 + Lx7 LINE L1 6029 6161 -1535 5 1365 1447 198 171 18 chr5 102334013 102334105 -50203154 + Lx7 LINE L1 6244 6338 -1358 5 1365 3520 30 2 2 chr5 102334105 102334512 -50202747 + MTB_Mm LTR MaLR 1 407 0 5 1365 1447 198 171 18 chr5 102334512 102334810 -50202449 + Lx7 LINE L1 6339 6694 -1002 5 1365 396 0 0 0 chr5 102335277 102335321 -50201938 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1365 423 98 0 0 chr5 102335562 102335623 -50201636 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1365 215 325 0 36 chr5 102335623 102335717 -50201542 + MIRm SINE MIR 70 154 -54 5 1365 969 147 0 0 chr5 102335818 102335961 -50201298 + B1_Mur4 SINE Alu 2 144 -6 5 1365 216 97 0 0 chr5 102335963 102335994 -50201265 + (CATA)n Simple_repeat Simple_repeat 2 32 0 5 1365 414 296 41 7 chr5 102337200 102337346 -50199913 + B3A SINE B2 48 198 0 5 1365 463 188 108 10 chr5 102338217 102338319 -50198940 + B1F2 SINE Alu 2 113 -36 5 1365 220 255 0 0 chr5 102338321 102338368 -50198891 + (CGA)n Simple_repeat Simple_repeat 3 49 0 5 1365 846 139 58 14 chr5 102339414 102339553 -50197706 - B1_Mus2 SINE Alu -2 145 1 5 1365 293 277 64 21 chr5 102340601 102340741 -50196518 + MER2 DNA MER2_type 103 248 -97 5 1365 21 0 0 0 chr5 102341341 102341362 -50195897 + AT_rich Low_complexity Low_complexity 1 21 0 5 1365 315 298 28 19 chr5 102342852 102342958 -50194301 + PB1D7 SINE Alu 14 120 0 5 1365 322 311 128 55 chr5 102343314 102343532 -50193727 + L1MEf LINE L1 1094 1327 -4873 5 1365 589 307 171 18 chr5 102343604 102343932 -50193327 + MTD LTR MaLR 18 395 -24 5 1365 207 0 0 0 chr5 102344982 102345005 -50192254 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 5 1365 200 195 0 0 chr5 102345005 102345046 -50192213 + MIR SINE MIR 117 157 -105 5 1365 852 205 0 0 chr5 102345836 102346354 -50190905 + (CA)n Simple_repeat Simple_repeat 1 518 0 5 1365 255 125 0 0 chr5 102347367 102347407 -50189852 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1365 983 148 28 0 chr5 102347413 102347741 -50189518 + (TCTA)n Simple_repeat Simple_repeat 1 337 0 5 1365 331 306 61 7 chr5 102349752 102349900 -50187359 + ID_B1 SINE B4 9 164 -60 5 1365 210 303 69 20 chr5 102349827 102349928 -50187331 + PB1D10 SINE Alu 5 110 -7 5 1365 216 158 0 0 chr5 102351177 102351215 -50186044 + (CGTG)n Simple_repeat Simple_repeat 1 38 0 5 1365 420 169 0 0 chr5 102351235 102351312 -50185947 + (TA)n Simple_repeat Simple_repeat 2 78 0 5 1365 24 0 0 0 chr5 102352087 102352111 -50185148 + AT_rich Low_complexity Low_complexity 1 24 0 5 1365 198 0 0 0 chr5 102353567 102353589 -50183670 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1365 774 278 9 14 chr5 102356974 102357186 -50180073 - B3 SINE B2 -5 211 1 5 1365 235 269 30 0 chr5 102357269 102357336 -50179923 + ID2 SINE ID 2 70 -13 5 1365 411 226 9 64 chr5 102357600 102357709 -50179550 + PB1D10 SINE Alu 13 115 -2 5 1365 523 257 26 46 chr5 102357957 102358185 -50179074 - B3A SINE B2 -1 215 1 5 1365 201 74 0 0 chr5 102358402 102358429 -50178830 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 5 1365 300 253 0 48 chr5 102358607 102358690 -50178569 - ID4_ SINE ID 0 83 5 5 1365 211 282 0 14 chr5 102358748 102358820 -50178439 - PB1D10 SINE Alu -35 82 12 5 1365 608 222 89 0 chr5 102359251 102359386 -50177873 - B1F2 SINE Alu 0 149 3 5 1365 312 27 0 0 chr5 102360026 102360063 -50177196 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 5 1365 685 196 21 0 chr5 102361103 102361246 -50176013 + B3A SINE B2 2 147 -51 5 1365 250 214 28 28 chr5 102362553 102362625 -50174634 + ID4_ SINE ID 1 72 -11 5 1365 27 0 0 0 chr5 102363976 102364003 -50173256 + AT_rich Low_complexity Low_complexity 1 27 0 5 1365 183 100 0 0 chr5 102364068 102364098 -50173161 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 5 1365 450 252 133 51 chr5 102364441 102364696 -50172563 - B4 SINE B4 -14 278 3 5 1366 465 268 109 6 chr5 102367330 102367495 -50169764 + B3 SINE B2 1 182 -34 5 1366 240 35 0 0 chr5 102367567 102367596 -50169663 + (CCA)n Simple_repeat Simple_repeat 3 31 0 5 1366 441 0 0 0 chr5 102368382 102368431 -50168828 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1366 437 225 126 55 chr5 102369982 102370165 -50167094 + B3A SINE B2 3 198 0 5 1366 1287 79 34 6 chr5 102370189 102370368 -50166891 - B2_Mm2 SINE B2 -11 184 1 5 1366 366 229 0 0 chr5 102370889 102370976 -50166283 - B1_Mus1 SINE Alu -55 93 6 5 1366 1259 209 121 68 chr5 102371209 102371699 -50165560 + RLTR20C LTR ERVK 33 534 0 5 1366 1161 68 7 0 chr5 102373596 102373742 -50163517 + B1_Mus1 SINE Alu 2 148 0 5 1366 232 77 77 0 chr5 102374435 102374500 -50162759 + (TA)n Simple_repeat Simple_repeat 1 70 0 5 1366 524 193 8 32 chr5 102374690 102374813 -50162446 + B1_Mur2 SINE Alu 30 149 0 5 1366 321 310 62 58 chr5 102374829 102375069 -50162190 + L1M1 LINE L1 5476 5716 -584 5 1366 388 243 32 114 chr5 102375149 102375186 -50162073 - RSINE1 SINE B4 -19 146 111 5 1366 4310 117 40 28 chr5 102375186 102375933 -50161326 + RMER6A LTR ERVK 1 756 0 5 1366 388 243 32 114 chr5 102375933 102376053 -50161206 - RSINE1 SINE B4 -55 110 2 5 1366 474 141 44 13 chr5 102376218 102376376 -50160883 + (CACAG)n Simple_repeat Simple_repeat 5 167 0 5 1366 1259 79 55 22 chr5 102376610 102376792 -50160467 + B2_Mm2 SINE B2 1 188 -7 5 1366 423 319 9 0 chr5 102376939 102377055 -50160204 - ID_B1 SINE B4 -26 198 82 5 1366 1398 86 16 5 chr5 102377112 102377300 -50159959 - B2_Mm2 SINE B2 -3 192 3 5 1366 21 71 0 0 chr5 102378129 102378171 -50159088 + AT_rich Low_complexity Low_complexity 1 42 0 5 1366 276 108 169 0 chr5 102379739 102379804 -50157455 + Lx9 LINE L1 7508 7583 -61 5 1366 22 0 0 0 chr5 102379865 102379887 -50157372 + AT_rich Low_complexity Low_complexity 1 22 0 5 1366 189 0 0 0 chr5 102379901 102379922 -50157337 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1366 2344 147 128 13 chr5 102381021 102381491 -50155768 + RLTR28 LTR ERVL 1 524 0 5 1366 285 319 32 0 chr5 102381802 102381896 -50155363 - B1F SINE Alu -9 140 44 5 1366 194 0 39 0 chr5 102382482 102382508 -50154751 + (TC)n Simple_repeat Simple_repeat 2 28 0 6 1366 523 181 19 0 chr5 102382508 102382613 -50154646 - B1_Mur4 SINE Alu -1 149 43 6 1366 1079 208 9 18 chr5 102382845 102383070 -50154189 + URR1B DNA MER1_type 1 223 -2 6 1366 183 42 0 0 chr5 102384381 102384405 -50152854 + (TTG)n Simple_repeat Simple_repeat 2 25 0 6 1366 1200 81 0 0 chr5 102384411 102384559 -50152700 - B1_Mus1 SINE Alu 0 148 1 6 1366 545 242 73 59 chr5 102384940 102385160 -50152099 - ID_B1 SINE B4 0 224 2 6 1366 252 312 71 0 chr5 102386203 102386315 -50150944 + PB1D7 SINE Alu 1 120 0 6 1366 27 0 0 0 chr5 102386978 102387005 -50150254 + AT_rich Low_complexity Low_complexity 1 27 0 6 1366 265 314 38 76 chr5 102387005 102387136 -50150123 + PB1 SINE Alu 1 126 -1 6 1366 473 225 79 7 chr5 102388722 102388861 -50148398 - B1F SINE Alu 0 149 1 6 1366 479 273 58 0 chr5 102391009 102391130 -50146129 + RSINE1 SINE B4 1 128 -37 6 1366 21 57 0 0 chr5 102391589 102391624 -50145635 + AT_rich Low_complexity Low_complexity 1 35 0 6 1366 243 0 0 0 chr5 102391695 102391722 -50145537 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 6 1366 222 313 47 24 chr5 102391723 102391808 -50145451 + B4 SINE B4 1 87 -205 6 1366 297 368 101 21 chr5 102391870 102392198 -50145061 + Lx8 LINE L1 7084 7437 -36 6 1366 3078 108 18 0 chr5 102392195 102392638 -50144621 + Lx2 LINE L1 6326 6776 -221 6 1366 26 0 0 0 chr5 102393496 102393522 -50143737 + AT_rich Low_complexity Low_complexity 1 26 0 6 1366 594 239 60 92 chr5 102394163 102394325 -50142934 + B3A SINE B2 3 165 -33 6 1366 342 0 0 0 chr5 102394325 102394363 -50142896 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1366 460 239 60 92 chr5 102394363 102394384 -50142875 + B2_Mm2 SINE B2 161 180 -15 6 1366 222 37 0 0 chr5 102395082 102395109 -50142150 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1366 1216 34 0 7 chr5 102396070 102396217 -50141042 + B1_Mus1 SINE Alu 2 147 -1 6 1366 648 0 0 0 chr5 102396218 102396290 -50140969 + (GA)n Simple_repeat Simple_repeat 2 73 0 6 1366 280 321 58 23 chr5 102396593 102396765 -50140494 + MLT1A LTR MaLR 73 250 -124 6 1366 1287 214 117 71 chr5 102397078 102397471 -50139788 - MTD LTR MaLR -8 411 1 6 1366 210 37 0 0 chr5 102398049 102398076 -50139183 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1366 468 0 0 0 chr5 102398834 102398886 -50138373 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 6 1366 301 284 40 40 chr5 102398892 102398991 -50138268 + PB1D10 SINE Alu 18 116 -1 6 1366 225 0 0 0 chr5 102399398 102399423 -50137836 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 6 1366 856 146 21 7 chr5 102399434 102399579 -50137680 - B1_Mus2 SINE Alu 0 147 1 6 1366 860 216 28 60 chr5 102399625 102399842 -50137417 - B3 SINE B2 -6 210 1 6 1366 277 312 0 24 chr5 102399941 102400023 -50137236 - ID4_ SINE ID 0 83 4 6 1366 226 277 15 0 chr5 102400564 102400629 -50136630 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 6 1366 567 209 63 9 chr5 102400669 102400780 -50136479 + B3A SINE B2 3 119 -79 6 1366 296 247 7 0 chr5 102401051 102401205 -50136054 + CT-rich Low_complexity Low_complexity 1 155 0 6 1366 1037 108 0 0 chr5 102401261 102401409 -50135850 + B1_Mus1 SINE Alu 1 148 0 6 1366 252 111 0 0 chr5 102401409 102401454 -50135805 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1366 1320 74 26 16 chr5 102401666 102401858 -50135401 + B2_Mm2 SINE B2 2 195 0 6 1366 201 39 0 0 chr5 102403443 102403469 -50133790 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1366 486 79 0 0 chr5 102403469 102403545 -50133714 + (GA)n Simple_repeat Simple_repeat 1 76 0 6 1366 2817 160 16 8 chr5 102404023 102404514 -50132745 - Lx2B LINE L1 -2 6998 6504 6 1366 193 259 72 24 chr5 102404525 102404608 -50132651 + L2 LINE L2 1400 1486 -1933 6 1366 1881 14 120 0 chr5 102405015 102405290 -50131969 + MERVL-int LTR ERVL 511 818 -4667 6 1366 457 36 0 0 chr5 102405291 102405347 -50131912 + MT2_Mm LTR ERVL 438 493 0 6 1366 6370 9 0 0 chr5 102405347 102406040 -50131219 + MERVL-int LTR ERVL 1 693 -4792 6 1366 372 37 0 53 chr5 102406040 102406097 -50131162 - RLTR22_Mur LTR ERVK -1019 829 776 6 1366 3627 10 0 14 chr5 102406095 102406518 -50130741 - MT2_Mm LTR ERVL -76 417 1 6 1366 314 26 0 0 chr5 102406518 102406556 -50130703 - MERVL-int LTR ERVL 0 5485 5448 6 1366 376 179 46 35 chr5 102406556 102406643 -50130616 - ORR1A3-int LTR MaLR -1323 640 553 6 1366 2549 20 3 0 chr5 102406643 102406935 -50130324 - MERVL-int LTR ERVL -125 5360 5068 6 1366 366 228 153 8 chr5 102407116 102407240 -50130019 + MTC LTR MaLR 1 142 -279 6 1366 701 289 183 4 chr5 102408258 102408526 -50128733 + MTEa LTR MaLR 59 374 -5 6 1366 266 73 24 0 chr5 102409137 102409178 -50128081 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1366 213 236 0 35 chr5 102409207 102409264 -50127995 + G-rich Low_complexity Low_complexity 4 58 0 6 1366 294 198 172 75 chr5 102409957 102410050 -50127209 - PB1D10 SINE Alu -5 112 11 6 1366 230 281 93 34 chr5 102410194 102410312 -50126947 - B1F1 SINE Alu -24 125 1 6 1366 404 320 0 15 chr5 102412069 102412199 -50125060 + B3A SINE B2 71 198 0 6 1366 320 291 115 85 chr5 102412237 102412601 -50124658 - L1MA9 LINE L1 -155 6157 5783 6 1366 1037 94 0 28 chr5 102412623 102412765 -50124494 - B1_Mus1 SINE Alu -9 139 2 6 1366 404 117 17 0 chr5 102412810 102412870 -50124389 - ORR1D1 LTR MaLR 0 384 324 6 1366 469 76 346 19 chr5 102412860 102412967 -50124292 - B2_Mm2 SINE B2 -7 188 47 6 1366 1254 114 11 0 chr5 102413052 102413227 -50124032 - B2_Mm1t SINE B2 -15 178 2 6 1366 580 196 39 77 chr5 102413250 102413405 -50123854 - ORR1D1 LTR MaLR -60 314 166 6 1366 709 203 66 88 chr5 102413390 102413638 -50123621 - ORR1D1 LTR MaLR -136 242 1 6 1366 1111 274 95 33 chr5 102413644 102414173 -50123086 - L1MA9 LINE L1 -563 5749 5184 6 1366 532 276 125 26 chr5 102414398 102414703 -50122556 - L1MA9 LINE L1 -934 5206 4872 6 1366 2244 89 19 19 chr5 102415355 102415674 -50121585 + ORR1A2 LTR MaLR 1 319 -8 6 1366 209 200 0 0 chr5 102416178 102416218 -50121041 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 6 1366 324 0 0 0 chr5 102416299 102416335 -50120924 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 6 1366 359 200 132 81 chr5 102416363 102416499 -50120760 - B1F SINE Alu -2 147 5 6 1366 282 56 0 0 chr5 102416970 102417006 -50120253 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 6 1366 234 247 47 105 chr5 102417247 102417259 -50120000 + MT2B LTR ERVL 152 158 -443 6 1366 401 234 12 24 chr5 102417259 102417361 -50119898 + B1_Mur3 SINE Alu 3 96 -24 6 1366 288 0 0 0 chr5 102417365 102417397 -50119862 + (TTG)n Simple_repeat Simple_repeat 1 32 0 6 1366 615 200 59 0 chr5 102418204 102418339 -50118920 + B1_Mur1 SINE Alu 7 149 0 6 1366 1397 65 5 21 chr5 102418401 102418591 -50118668 + B2_Mm1t SINE B2 2 188 -5 6 1366 21 0 0 0 chr5 102419894 102419915 -50117344 + GC_rich Low_complexity Low_complexity 1 21 0 6 1366 291 314 78 0 chr5 102420116 102420224 -50117035 + B1F2 SINE Alu 1 115 -34 6 1366 211 264 57 0 chr5 102420465 102420518 -50116741 + ID_B1 SINE B4 94 149 -75 6 1366 2484 116 130 11 chr5 102420577 102421015 -50116244 + MTC-int LTR MaLR 593 1082 -176 6 1366 369 292 69 40 chr5 102421126 102421301 -50115958 + L1MC LINE L1 2664 2843 -3303 6 1366 733 274 9 54 chr5 102421351 102421575 -50115684 + ID_B1 SINE B4 10 223 -1 6 1366 257 261 19 107 chr5 102421593 102421685 -50115574 + PB1D10 SINE Alu 22 108 -9 6 1366 193 0 61 30 chr5 102421685 102421718 -50115541 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 6 1366 333 122 0 20 chr5 102422496 102422546 -50114713 + RMER5 LTR ERV1 440 488 -46 6 1366 317 182 122 61 chr5 102423659 102423741 -50113518 - PB1D10 SINE Alu -2 115 29 6 1366 242 301 18 24 chr5 102423934 102424101 -50113158 + L1MC LINE L1 5259 5424 -756 6 1366 347 187 9 16 chr5 102424102 102424207 -50113052 - B2_Mm2 SINE B2 -10 185 47 6 1366 1118 87 62 0 chr5 102424243 102424404 -50112855 - B2_Mm1t SINE B2 -22 171 1 6 1366 267 267 76 65 chr5 102424472 102424564 -50112695 + MLT1D LTR MaLR 12 104 -401 6 1366 368 223 95 129 chr5 102424714 102424871 -50112388 + B1_Mur2 SINE Alu 1 149 0 6 1366 340 293 89 77 chr5 102424900 102425148 -50112111 + MLT1D LTR MaLR 255 505 0 6 1366 21 36 0 0 chr5 102425837 102425865 -50111394 + AT_rich Low_complexity Low_complexity 1 28 0 6 1366 25 0 0 0 chr5 102425942 102425967 -50111292 + AT_rich Low_complexity Low_complexity 1 25 0 6 1366 1191 55 7 0 chr5 102425967 102426113 -50111146 - B1_Mus1 SINE Alu 0 148 2 6 1366 374 272 77 30 chr5 102426696 102426925 -50110334 - B4A SINE B4 -18 274 4 6 1366 183 129 0 0 chr5 102427534 102427565 -50109694 + (TTC)n Simple_repeat Simple_repeat 3 33 0 6 1366 780 135 0 67 chr5 102427565 102427700 -50109559 - B1_Mur2 SINE Alu 0 149 24 6 1366 1451 64 16 11 chr5 102427712 102427901 -50109358 + B2_Mm2 SINE B2 1 190 -5 6 1366 620 187 144 36 chr5 102429309 102429448 -50107811 + RSINE1 SINE B4 12 165 0 6 1366 553 315 53 90 chr5 102429472 102429772 -50107487 + Tigger5 DNA MER2_type 1 289 -2117 6 1366 29 0 0 0 chr5 102429881 102429910 -50107349 + AT_rich Low_complexity Low_complexity 1 29 0 6 1366 399 343 70 0 chr5 102430427 102430570 -50106689 + RSINE1 SINE B4 12 164 -1 6 1366 560 246 5 126 chr5 102430905 102431128 -50106131 + B3A SINE B2 3 198 0 6 1366 781 217 101 0 chr5 102431238 102431427 -50105832 + B3 SINE B2 1 208 -8 6 1366 234 0 0 0 chr5 102431625 102431651 -50105608 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1366 183 129 0 0 chr5 102432873 102432904 -50104355 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1366 622 239 138 29 chr5 102432946 102433192 -50104067 - B4A SINE B4 -18 274 2 6 1366 234 236 8 16 chr5 102433335 102433460 -50103799 + (CA)n Simple_repeat Simple_repeat 1 124 0 6 1366 402 266 17 0 chr5 102433482 102433659 -50103600 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1366 247 278 43 22 chr5 102434214 102434306 -50102953 - MER58C DNA MER1_type -95 120 27 6 1366 706 232 106 20 chr5 102434348 102434546 -50102713 + B3 SINE B2 1 215 -1 7 1366 1188 54 0 20 chr5 102434841 102434991 -50102268 + B1_Mus1 SINE Alu 2 148 0 7 1366 286 311 71 32 chr5 102435252 102435343 -50101916 + MT2B2 LTR ERVL 162 257 -327 7 1366 440 168 257 0 chr5 102435343 102435444 -50101815 + B1_Mus2 SINE Alu 1 127 -20 7 1366 273 328 39 78 chr5 102435452 102435581 -50101678 - ID_B1 SINE B4 -45 179 56 7 1366 212 250 0 0 chr5 102435612 102435652 -50101607 - ID SINE ID -150 74 35 7 1366 474 256 251 0 chr5 102435748 102435959 -50101300 + MTD LTR MaLR 156 419 0 7 1366 471 90 0 0 chr5 102436013 102436091 -50101168 + (TG)n Simple_repeat Simple_repeat 1 78 0 7 1366 516 72 0 0 chr5 102436091 102436160 -50101099 + (GA)n Simple_repeat Simple_repeat 2 70 0 7 1366 258 203 147 13 chr5 102436254 102436329 -50100930 - PB1D10 SINE Alu -32 85 1 7 1366 397 261 50 67 chr5 102436540 102436659 -50100600 - B1F1 SINE Alu -15 134 18 7 1366 334 258 57 47 chr5 102438042 102438148 -50099111 + MT2B LTR ERVL 158 264 -337 7 1366 960 66 0 0 chr5 102438061 102438183 -50099076 + B1_Mus2 SINE Alu 26 147 0 7 1366 327 104 0 0 chr5 102438183 102438231 -50099028 + (A)n Simple_repeat Simple_repeat 1 48 0 7 1366 281 330 36 0 chr5 102439495 102439607 -50097652 - MER3 DNA MER1_type 0 209 94 7 1366 227 227 15 0 chr5 102440348 102440414 -50096845 + G-rich Low_complexity Low_complexity 4 70 0 7 1366 893 142 50 0 chr5 102440640 102440781 -50096478 - B1_Mur3 SINE Alu 0 149 2 7 1366 995 198 53 53 chr5 102440942 102441204 -50096055 + RMER10B LTR ERVL 1 262 -136 7 1366 231 167 0 0 chr5 102441204 102441246 -50096013 + CT-rich Low_complexity Low_complexity 1 42 0 7 1366 1221 103 49 5 chr5 102441259 102441444 -50095815 - B2_Mm1t SINE B2 0 193 1 7 1366 916 149 204 11 chr5 102441452 102441628 -50095631 - B3 SINE B2 -4 212 3 7 1366 24 0 0 0 chr5 102441643 102441667 -50095592 + AT_rich Low_complexity Low_complexity 1 24 0 7 1366 1201 29 0 0 chr5 102441696 102441833 -50095426 - B1_Mm SINE Alu -10 137 1 7 1366 836 137 11 97 chr5 102441875 102442061 -50095198 + RMER10B LTR ERVL 228 397 -1 7 1366 1260 48 0 0 chr5 102442288 102442435 -50094824 + B1_Mus2 SINE Alu 1 147 0 7 1366 368 292 125 51 chr5 102443383 102443659 -50093600 + RLTR11A2 LTR ERVK 1 286 -167 7 1366 287 318 58 70 chr5 102443678 102443935 -50093324 + RLTR12B LTR ERVK 241 494 -34 7 1366 297 0 0 0 chr5 102444408 102444441 -50092818 + (TC)n Simple_repeat Simple_repeat 2 34 0 7 1366 3440 97 19 74 chr5 102444441 102445009 -50092250 - MT2B LTR ERVL -64 537 1 7 1366 408 40 0 0 chr5 102445346 102445396 -50091863 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1366 582 233 58 29 chr5 102446237 102446374 -50090885 + B1_Mur1 SINE Alu 3 143 -6 7 1366 921 152 108 12 chr5 102446482 102446621 -50090638 + B2_Mm2 SINE B2 1 157 -38 7 1366 221 0 0 33 chr5 102446621 102446651 -50090608 + (TAA)n Simple_repeat Simple_repeat 3 31 0 7 1366 921 152 108 12 chr5 102446651 102446677 -50090582 + B2_Mm2 SINE B2 158 182 -13 7 1366 693 266 115 91 chr5 102446874 102447238 -50090021 + MTE2a LTR MaLR 1 373 -6 7 1366 180 0 0 0 chr5 102447411 102447431 -50089828 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1366 333 0 0 0 chr5 102447537 102447574 -50089685 + (TGGA)n Simple_repeat Simple_repeat 2 38 0 7 1366 197 307 89 78 chr5 102447769 102447949 -50089310 + L2c LINE L2 3205 3386 -1 7 1366 1016 282 103 20 chr5 102448371 102448872 -50088387 + MLT1F1 LTR MaLR 1 560 0 7 1366 1012 228 16 0 chr5 102448929 102449113 -50088146 - B3 SINE B2 -27 189 3 7 1366 325 274 41 23 chr5 102449326 102449498 -50087761 + L1MB4 LINE L1 4983 5157 -989 7 1366 2216 84 35 10 chr5 102449628 102449942 -50087317 - ORR1A3 LTR MaLR 0 326 5 7 1366 307 322 121 68 chr5 102450104 102450533 -50086726 + L1MB4 LINE L1 5659 6110 -70 7 1366 250 163 23 0 chr5 102451801 102451844 -50085415 + Lx9 LINE L1 5632 5675 -172 7 1366 1404 45 22 11 chr5 102451844 102452022 -50085237 + B2_Mm2 SINE B2 2 181 -14 7 1366 312 62 544 0 chr5 102452035 102452130 -50085129 + B2_Mm2 SINE B2 47 193 -2 7 1366 1168 55 7 0 chr5 102452132 102452277 -50084982 + B1_Mus1 SINE Alu 2 147 -1 7 1366 295 245 19 95 chr5 102452305 102452463 -50084796 + Lx7 LINE L1 5684 5829 -1867 7 1366 297 278 50 34 chr5 102452617 102452736 -50084523 + Lx9 LINE L1 5876 5996 -1648 7 1366 463 293 98 0 chr5 102452895 102453028 -50084231 + B1_Mur1 SINE Alu 2 147 -2 7 1366 2320 267 104 40 chr5 102453071 102453984 -50083275 + Lx8 LINE L1 6188 7158 -315 7 1366 379 0 39 0 chr5 102454269 102454320 -50082939 + (TATAG)n Simple_repeat Simple_repeat 5 57 0 7 1366 629 221 14 14 chr5 102455420 102455562 -50081697 - B1_Mur2 SINE Alu -6 143 2 7 1366 2772 61 3 0 chr5 102455906 102456251 -50081008 - ORR1A1 LTR MaLR 0 346 1 7 1366 321 183 414 0 chr5 102456692 102456796 -50080463 + B1F1 SINE Alu 1 147 -2 7 1366 363 301 100 57 chr5 102456838 102457137 -50080122 + L1MC4a LINE L1 6616 6927 -955 7 1366 2398 105 9 0 chr5 102457523 102457847 -50079412 - ORR1A2 LTR MaLR 0 327 1 7 1366 356 252 36 71 chr5 102457954 102458067 -50079192 + ORR1E LTR MaLR 1 109 -265 7 1366 229 217 41 55 chr5 102458548 102458621 -50078638 + L1MC4 LINE L1 7961 8032 -10 7 1366 336 247 42 21 chr5 102459178 102459273 -50077986 - B1F SINE Alu -21 128 32 7 1366 446 254 25 147 chr5 102460218 102460261 -50076998 - B1F SINE Alu -11 138 95 7 1366 1546 189 70 53 chr5 102460261 102460635 -50076624 - ORR1C2 LTR MaLR 0 384 5 7 1366 446 254 25 147 chr5 102460635 102460748 -50076511 - B1F SINE Alu -55 94 1 7 1366 353 332 106 66 chr5 102460748 102461050 -50076209 + MER34 LTR ERV1 124 437 -105 7 1366 524 267 117 33 chr5 102461078 102461318 -50075941 + ORR1E LTR MaLR 1 260 -99 7 1366 261 224 99 62 chr5 102461426 102461507 -50075752 + MER34 LTR ERV1 459 542 0 7 1366 198 254 75 60 chr5 102462402 102462469 -50074790 - MIRb SINE MIR -187 81 14 7 1366 1157 62 0 20 chr5 102462865 102463014 -50074245 - B1_Mus1 SINE Alu -1 147 2 7 1366 369 341 24 0 chr5 102463672 102463795 -50073464 + RSINE1 SINE B4 1 126 -39 7 1366 644 222 8 16 chr5 102463891 102464019 -50073240 + B1_Mur4 SINE Alu 24 150 0 7 1366 301 189 19 0 chr5 102465697 102465750 -50071509 - HAL1-3A_ME LINE L1 -836 2022 1969 7 1366 399 244 0 0 chr5 102465750 102465881 -50071378 + (TG)n Simple_repeat Simple_repeat 1 131 0 7 1366 2342 166 64 12 chr5 102467034 102467517 -50069742 + Lx5 LINE L1 5731 6238 -812 7 1366 1818 174 28 53 chr5 102467533 102467597 -50069662 + Lx5 LINE L1 6667 6729 -321 7 1366 198 0 0 0 chr5 102467597 102467619 -50069640 + (CA)n Simple_repeat Simple_repeat 1 22 0 7 1366 1818 174 28 53 chr5 102467619 102467863 -50069396 + Lx5 LINE L1 6730 6979 -71 7 1366 1166 62 14 0 chr5 102467863 102468009 -50069250 - B1_Mus1 SINE Alu 0 148 1 7 1366 1818 174 28 53 chr5 102468009 102468093 -50069166 + Lx5 LINE L1 6980 7049 -1 7 1366 233 354 0 24 chr5 102468604 102468688 -50068571 - ID4 SINE ID 0 83 2 7 1366 1047 83 21 0 chr5 102469099 102469243 -50068016 - B1_Mus1 SINE Alu 0 148 2 7 1366 1119 82 0 7 chr5 102469346 102469494 -50067765 + B1_Mus2 SINE Alu 1 147 0 7 1366 505 252 92 0 chr5 102470104 102470235 -50067024 + Tigger5 DNA MER2_type 67 209 -2197 7 1366 221 358 49 16 chr5 102470479 102470601 -50066658 - MIR3 SINE MIR -54 154 29 7 1366 1338 111 16 10 chr5 102470892 102471084 -50066175 + B2_Mm2 SINE B2 2 194 -1 7 1366 855 201 0 52 chr5 102471103 102471276 -50065983 + RSINE1 SINE B4 2 165 0 7 1366 232 217 22 0 chr5 102472132 102472178 -50065081 - ID_B1 SINE B4 -3 221 175 7 1366 569 296 0 53 chr5 102472259 102472368 -50064891 + RSINE1 SINE B4 28 135 -30 7 1366 1674 146 22 96 chr5 102472368 102472723 -50064536 + ORR1A4 LTR MaLR 1 329 0 7 1366 569 296 0 53 chr5 102472723 102472745 -50064514 + RSINE1 SINE B4 136 152 -13 7 1366 351 0 0 0 chr5 102472845 102472884 -50064375 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1366 393 260 38 9 chr5 102473022 102473127 -50064132 - ID_B1 SINE B4 -53 171 64 7 1366 247 268 51 10 chr5 102473416 102473514 -50063745 + L1M5 LINE L1 5634 5735 -505 7 1366 1671 31 5 0 chr5 102473521 102473713 -50063546 - B2_Mm1t SINE B2 0 193 1 7 1366 387 209 62 62 chr5 102473817 102473929 -50063330 + ID_B1 SINE B4 113 224 0 7 1366 267 286 202 50 chr5 102475908 102476225 -50061034 + L2a LINE L2 2977 3341 -85 7 1366 1368 78 11 6 chr5 102476350 102476530 -50060729 - B2_Mm2 SINE B2 -14 181 1 7 1366 2727 111 15 18 chr5 102477561 102477956 -50059303 + ORR1B1 LTR MaLR 1 394 0 7 1366 1348 50 44 0 chr5 102478207 102478387 -50058872 + B2_Mm2 SINE B2 2 189 -6 7 1366 344 309 87 35 chr5 102478392 102478655 -50058604 - L1MC4a LINE L1 -1242 6640 6370 7 1366 313 312 85 21 chr5 102479061 102479202 -50058057 + L1M4 LINE L1 3645 3794 -2352 7 1366 187 79 53 0 chr5 102479312 102479350 -50057909 + (CCCCCA)n Simple_repeat Simple_repeat 1 40 0 7 1366 1009 261 200 27 chr5 102479422 102479871 -50057388 + MTEb-int LTR MaLR 1053 1579 -1 7 1366 1273 239 24 30 chr5 102479872 102480170 -50057089 + MTEb LTR MaLR 1 296 -83 7 1366 267 238 83 28 chr5 102480185 102480293 -50056966 + L1MD LINE L1 5195 5308 -838 7 1366 234 0 0 0 chr5 102480395 102480421 -50056838 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 7 1366 351 118 40 0 chr5 102480453 102480529 -50056730 + (TCTA)n Simple_repeat Simple_repeat 1 79 0 7 1366 480 359 31 20 chr5 102480535 102480731 -50056528 - B4A SINE B4 -84 208 11 7 1366 339 224 0 0 chr5 102481282 102481349 -50055910 + PB1D7 SINE Alu 45 111 -9 7 1366 226 203 102 0 chr5 102481685 102481744 -50055515 + B1F1 SINE Alu 9 73 -76 7 1366 270 0 0 0 chr5 102482342 102482372 -50054887 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 7 1366 234 0 0 0 chr5 102482386 102482412 -50054847 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 7 1366 243 0 0 0 chr5 102483005 102483032 -50054227 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1366 797 145 35 28 chr5 102483224 102483366 -50053893 + B1_Mur1 SINE Alu 7 149 0 7 1366 685 282 50 25 chr5 102484328 102484528 -50052731 - MTD LTR MaLR -118 301 97 7 1366 246 250 0 0 chr5 102485789 102485841 -50051418 + MER2 DNA MER2_type 10 61 -284 8 1366 286 329 98 12 chr5 102485949 102486112 -50051147 + MER2 DNA MER2_type 88 264 -81 8 1366 798 226 5 22 chr5 102486248 102486433 -50050826 + B3A SINE B2 1 182 -16 8 1366 244 276 66 9 chr5 102487100 102487206 -50050053 + L1MA9 LINE L1 5968 6079 -233 8 1366 792 228 128 42 chr5 102487287 102487484 -50049775 + B4A SINE B4 1 221 -71 8 1366 1128 106 44 6 chr5 102487484 102487665 -50049594 + B2_Mm2 SINE B2 1 188 -7 8 1366 792 228 128 42 chr5 102487665 102487732 -50049527 + B4A SINE B4 222 288 -4 8 1366 489 47 0 0 chr5 102487754 102487818 -50049441 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1366 368 262 9 46 chr5 102488361 102488469 -50048790 + PB1D10 SINE Alu 2 105 -12 8 1366 273 119 0 0 chr5 102488608 102488650 -50048609 + (T)n Simple_repeat Simple_repeat 1 42 0 8 1366 1246 34 0 0 chr5 102488650 102488796 -50048463 - B1_Mm SINE Alu 0 147 2 8 1366 615 234 4 154 chr5 102488925 102489178 -50048081 - ID_B1 SINE B4 -8 216 2 8 1366 232 105 0 26 chr5 102490256 102490295 -50046964 + RLTR11A2 LTR ERVK 490 527 0 8 1366 1061 161 95 5 chr5 102490628 102490828 -50046431 + URR1B DNA MER1_type 1 218 -7 8 1366 207 0 0 0 chr5 102491552 102491575 -50045684 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1366 187 196 193 18 chr5 102492578 102492635 -50044624 + L2 LINE L2 2875 2941 -478 8 1366 1416 64 12 0 chr5 102493397 102493570 -50043689 + B2_Mm2 SINE B2 2 176 -19 8 1366 660 273 58 90 chr5 102494914 102495103 -50042156 + B3A SINE B2 2 184 -11 8 1366 346 267 12 0 chr5 102495164 102495250 -50042009 - ID_B1 SINE B4 -33 191 105 8 1366 219 297 43 32 chr5 102496936 102497030 -50040229 - PB1 SINE Alu -30 97 3 8 1367 24 0 0 0 chr5 102499145 102499169 -50038090 + GC_rich Low_complexity Low_complexity 1 24 0 8 1367 195 42 0 0 chr5 102499799 102499823 -50037436 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1367 279 0 0 0 chr5 102501069 102501100 -50036159 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 1 1367 225 254 30 0 chr5 102501595 102501662 -50035597 + (TA)n Simple_repeat Simple_repeat 1 69 0 2 1367 789 82 0 0 chr5 102503362 102503472 -50033787 + (TC)n Simple_repeat Simple_repeat 1 110 0 3 1367 264 312 40 30 chr5 102503473 102503572 -50033687 - PB1D9 SINE Alu -15 105 6 4 1367 1192 136 5 35 chr5 102503987 102504186 -50033073 - B2_Mm2 SINE B2 0 195 3 5 1367 649 217 86 0 chr5 102505210 102505385 -50031874 - B3 SINE B2 0 216 27 6 1367 326 258 0 22 chr5 102505402 102505493 -50031766 - B1F2 SINE Alu -1 148 60 7 1367 379 256 67 17 chr5 102505493 102505612 -50031647 - B1F SINE Alu -22 127 3 8 1367 216 67 0 0 chr5 102505634 102505664 -50031595 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1367 304 284 13 10 chr5 102505836 102505956 -50031303 + MLT2B4 LTR ERVL 1 122 -432 1 1367 314 245 10 31 chr5 102506041 102506138 -50031121 - PB1D10 SINE Alu 0 117 23 1 1367 1029 76 93 6 chr5 102506852 102507024 -50030235 - B2_Mm2 SINE B2 -7 188 2 1 1367 225 344 105 15 chr5 102507451 102507584 -50029675 + B3A SINE B2 50 194 -4 1 1367 216 97 0 0 chr5 102507697 102507728 -50029531 + (TCC)n Simple_repeat Simple_repeat 1 31 0 1 1367 322 314 9 9 chr5 102507729 102507835 -50029424 - PB1D10 SINE Alu -11 106 1 1 1367 1692 142 107 15 chr5 102507870 102507902 -50029357 - ORR1B2 LTR MaLR -8 359 328 1 1367 590 173 0 213 chr5 102507902 102508071 -50029188 - B1_Mus2 SINE Alu -14 133 1 1 1367 1692 142 107 15 chr5 102508071 102508366 -50028893 - ORR1B2 LTR MaLR -40 327 2 1 1367 419 295 0 9 chr5 102508791 102508897 -50028362 - B1F SINE Alu -8 141 37 1 1367 680 265 128 21 chr5 102508898 102509257 -50028002 + MTD LTR MaLR 1 418 -1 1 1367 272 282 14 0 chr5 102509379 102509450 -50027809 + ID4 SINE ID 3 74 -9 2 1367 666 12 0 0 chr5 102510025 102510107 -50027152 - L1Md_T LINE L1 0 6582 6501 2 1367 1473 238 74 0 chr5 102510940 102511293 -50025966 - MTE2b LTR MaLR 0 379 1 2 1367 513 197 17 0 chr5 102511296 102511413 -50025846 + ORR1D2 LTR MaLR 1 119 -251 2 1367 541 167 127 0 chr5 102511440 102511566 -50025693 + ORR1D2 LTR MaLR 229 370 0 2 1367 1238 253 14 4 chr5 102512220 102512498 -50024761 - MTE2b LTR MaLR -84 295 15 2 1367 1490 68 5 0 chr5 102512572 102512762 -50024497 - B2_Mm1a SINE B2 -1 192 2 2 1367 697 201 28 7 chr5 102512917 102513062 -50024197 - ID_B1 SINE B4 -7 217 70 2 1367 280 210 16 0 chr5 102513056 102513118 -50024141 - U2 snRNA snRNA -118 70 8 2 1367 183 80 0 0 chr5 102513124 102513149 -50024110 + (ATG)n Simple_repeat Simple_repeat 2 26 0 2 1367 781 228 23 56 chr5 102513170 102513384 -50023875 - B3 SINE B2 0 216 10 2 1367 1155 75 0 14 chr5 102513385 102513533 -50023726 + B1_Mus1 SINE Alu 3 148 0 3 1367 195 125 0 0 chr5 102513533 102513573 -50023686 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1367 201 74 0 0 chr5 102513593 102513620 -50023639 + (TTCTG)n Simple_repeat Simple_repeat 4 30 0 3 1367 366 320 96 32 chr5 102514334 102514615 -50022644 + MT2A LTR ERVL 142 440 -93 3 1367 207 141 44 59 chr5 102514678 102514746 -50022513 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 3 1367 1286 98 27 5 chr5 102514872 102515056 -50022203 - B2_Mm2 SINE B2 -7 188 1 3 1367 186 106 64 0 chr5 102515665 102515712 -50021547 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 1367 677 238 129 46 chr5 102515778 102515972 -50021287 + B3 SINE B2 3 212 -4 3 1367 216 348 0 68 chr5 102516374 102516390 -50020869 + ID4 SINE ID 2 70 -13 3 1367 229 236 35 52 chr5 102516390 102516448 -50020811 + tRNA-Ala-GCA tRNA tRNA 8 64 -11 3 1367 1548 193 150 5 chr5 102517140 102517548 -50019711 + RLTR18B LTR ERVK 41 507 -5 4 1367 454 296 14 21 chr5 102517672 102517817 -50019442 - ID_B1 SINE B4 -2 222 79 4 1367 425 256 0 0 chr5 102517861 102517939 -50019320 + ID4_ SINE ID 1 78 -5 4 1367 882 182 0 0 chr5 102518385 102518533 -50018726 + B1_Mus1 SINE Alu 1 148 0 4 1367 461 297 119 70 chr5 102518959 102519245 -50018014 + MLT1A0 LTR MaLR 66 365 0 4 1367 1302 221 163 18 chr5 102519576 102520031 -50017228 - RLTR11A2 LTR ERVK 0 527 7 4 1367 468 268 169 15 chr5 102520512 102520713 -50016546 - B4A SINE B4 -58 234 3 4 1367 331 293 104 55 chr5 102520745 102520947 -50016312 - L1MC5 LINE L1 -204 7757 7546 4 1367 198 0 0 0 chr5 102521172 102521194 -50016065 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 4 1367 534 140 77 26 chr5 102521304 102521318 -50015941 - B1_Mur1 SINE Alu -1 148 138 4 1367 216 0 0 0 chr5 102521318 102521342 -50015917 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1367 534 140 77 26 chr5 102521342 102521444 -50015815 - B1_Mur1 SINE Alu -12 137 27 4 1367 557 191 175 0 chr5 102521500 102521626 -50015633 - B1_Mur3 SINE Alu 0 149 2 5 1367 6947 131 8 11 chr5 102521848 102522965 -50014294 - L1_Mur2 LINE L1 -516 5667 4514 5 1367 7364 142 62 11 chr5 102522963 102524345 -50012914 + Lx2B LINE L1 5554 7000 0 5 1367 313 315 9 43 chr5 102524360 102524476 -50012783 - PB1D10 SINE Alu -2 115 4 5 1367 226 241 59 24 chr5 102524484 102524569 -50012690 - L1MC5 LINE L1 -31 7930 7843 5 1367 1134 97 22 28 chr5 102524746 102524927 -50012332 - B2_Mm2 SINE B2 -14 181 2 5 1367 374 95 319 71 chr5 102525409 102525522 -50011737 - B2_Mm2 SINE B2 -8 187 47 5 1367 1013 141 11 28 chr5 102525588 102525770 -50011489 - B2_Mm1t SINE B2 -14 179 1 5 1367 304 253 23 11 chr5 102526102 102526190 -50011069 + ID_B1 SINE B4 131 219 -5 5 1367 3435 40 0 2 chr5 102526191 102526592 -50010667 - MTB LTR MaLR 0 400 1 6 1367 461 80 0 13 chr5 102527491 102527567 -50009692 + (TATG)n Simple_repeat Simple_repeat 2 76 0 6 1367 691 160 17 11 chr5 102527631 102527750 -50009509 + (TCTA)n Simple_repeat Simple_repeat 4 124 0 6 1367 1228 61 0 0 chr5 102527750 102527897 -50009362 - B1_Mus1 SINE Alu 0 148 2 6 1367 691 182 17 6 chr5 102527897 102528013 -50009246 + (TCTA)n Simple_repeat Simple_repeat 1 117 0 6 1367 215 338 13 0 chr5 102528477 102528554 -50008705 - ID4 SINE ID -3 80 3 6 1367 260 309 71 97 chr5 102528813 102529082 -50008177 - Helitron3Na_Mam RC Helitron -91 395 134 6 1367 216 97 0 0 chr5 102529133 102529164 -50008095 + (CAAG)n Simple_repeat Simple_repeat 1 31 0 6 1367 471 380 50 40 chr5 102530130 102530429 -50006830 + LTR16B LTR ERVL 5 306 -156 6 1367 5475 88 36 10 chr5 102530524 102531403 -50005856 - RLTR13D6 LTR ERVK 0 1023 1 6 1367 617 159 0 18 chr5 102531428 102531537 -50005722 - B2_Mm2 SINE B2 -88 107 1 7 1367 577 281 63 21 chr5 102531561 102531750 -50005509 - B3A SINE B2 0 198 2 7 1367 263 334 187 10 chr5 102531778 102532083 -50005176 + L2a LINE L2 2969 3327 -99 7 1367 548 279 57 0 chr5 102533539 102533697 -50003562 + B4A SINE B4 84 250 -42 7 1367 538 295 122 36 chr5 102533673 102533926 -50003333 - MTD LTR MaLR -144 275 1 7 1367 847 202 85 5 chr5 102534161 102534350 -50002909 - MTD LTR MaLR -52 367 164 7 1367 229 374 20 39 chr5 102534351 102534504 -50002755 + MLT1G1 LTR MaLR 158 307 -365 7 1367 423 0 0 0 chr5 102534675 102534722 -50002537 + (TC)n Simple_repeat Simple_repeat 1 47 0 7 1367 612 0 0 0 chr5 102534722 102534789 -50002470 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1367 553 140 120 0 chr5 102534789 102534889 -50002370 - B1_Mur2 SINE Alu -28 121 10 7 1367 255 287 68 60 chr5 102535114 102535296 -50001963 + MLT1G1 LTR MaLR 300 523 -56 7 1367 352 292 57 24 chr5 102535393 102535516 -50001743 - B1F1 SINE Alu -22 127 1 8 1367 691 258 108 23 chr5 102535523 102535828 -50001431 - L1MB3 LINE L1 -54 6129 5799 8 1367 414 0 0 0 chr5 102535852 102535898 -50001361 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1367 210 326 11 22 chr5 102535951 102536130 -50001129 + (CA)n Simple_repeat Simple_repeat 1 177 0 8 1367 234 253 25 12 chr5 102536132 102536195 -50001064 + CT-rich Low_complexity Low_complexity 17 81 0 8 1367 192 111 0 0 chr5 102536195 102536231 -50001028 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1367 234 253 25 12 chr5 102536231 102536247 -50001012 + polypyrimidine Low_complexity Low_complexity 1 16 0 8 1367 294 143 0 0 chr5 102536264 102536313 -50000946 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1367 977 206 9 40 chr5 102536765 102536988 -50000271 - B3 SINE B2 0 216 1 8 1367 405 0 0 0 chr5 102538017 102538062 -49999197 + (GA)n Simple_repeat Simple_repeat 2 46 0 8 1367 683 180 35 14 chr5 102538258 102538399 -49998860 + B1_Mur4 SINE Alu 7 150 0 8 1367 207 154 18 55 chr5 102538401 102538456 -49998803 + A-rich Low_complexity Low_complexity 2 54 0 9 1367 207 0 0 0 chr5 102538466 102538489 -49998770 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1367 803 118 35 12 chr5 102539704 102539876 -49997383 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 9 1367 269 204 19 0 chr5 102539888 102539942 -49997317 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 9 1367 282 278 14 0 chr5 102540170 102540242 -49997017 - MLT2D LTR ERVL -232 182 110 9 1367 224 351 52 9 chr5 102540395 102540510 -49996749 - MIRc SINE MIR -113 155 36 9 1367 358 281 147 10 chr5 102541169 102541367 -49995892 + B4A SINE B4 7 231 -61 9 1367 2284 253 23 22 chr5 102541504 102542184 -49995075 - Lx7 LINE L1 0 7696 6829 9 1367 192 97 0 0 chr5 102542311 102542342 -49994917 + (TGGGGG)n Simple_repeat Simple_repeat 4 34 0 9 1367 1433 229 49 0 chr5 102543130 102543436 -49993823 + Lx8 LINE L1 6776 7096 -377 9 1367 350 74 0 18 chr5 102544249 102544304 -49992955 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1367 308 24 24 0 chr5 102545026 102545067 -49992192 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 1367 943 121 7 26 chr5 102545082 102545235 -49992024 - B1_Mur4 SINE Alu 0 150 1 1 1367 1626 227 79 4 chr5 102545246 102545357 -49991902 - Lx9 LINE L1 -7 7637 7510 1 1367 357 82 0 0 chr5 102545357 102545406 -49991853 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1367 1626 227 79 4 chr5 102545406 102545749 -49991510 - Lx9 LINE L1 -135 7509 7149 1 1367 670 191 17 0 chr5 102545753 102545868 -49991391 - B1_Mur4 SINE Alu -28 122 6 1 1367 304 254 78 84 chr5 102545760 102545902 -49991357 - MT2B LTR ERVL -337 264 124 1 1367 448 273 54 11 chr5 102546970 102547155 -49990104 - L1ME1 LINE L1 -1 6178 5986 1 1367 630 317 39 10 chr5 102548115 102548322 -49988937 + RMER15 LTR ERVL 346 558 -17 1 1367 231 114 0 0 chr5 102548557 102548592 -49988667 + (TCC)n Simple_repeat Simple_repeat 2 36 0 1 1367 417 252 8 59 chr5 102548604 102548722 -49988537 - PB1D7 SINE Alu -8 112 1 1 1367 225 108 0 0 chr5 102549900 102549937 -49987322 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1367 210 71 0 0 chr5 102549937 102549965 -49987294 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1367 201 39 0 0 chr5 102549966 102549992 -49987267 + (TATG)n Simple_repeat Simple_repeat 1 26 0 1 1367 1727 237 61 16 chr5 102550058 102550551 -49986708 + RMER20A LTR ERVK 2 516 0 1 1367 805 243 44 0 chr5 102550604 102550810 -49986449 - ID_B1 SINE B4 -9 215 1 1 1367 450 288 15 29 chr5 102551068 102551204 -49986055 - MTEb LTR MaLR 0 379 246 1 1367 387 386 32 27 chr5 102551216 102551437 -49985822 - MTEb LTR MaLR -127 232 11 1 1367 443 404 36 33 chr5 102551532 102551806 -49985453 + LTR33 LTR ERVL 1 275 -240 1 1367 235 345 158 26 chr5 102552374 102552731 -49984528 + L2 LINE L2 150 524 -2895 1 1367 180 0 0 0 chr5 102552731 102552751 -49984508 + (CCCCCT)n Simple_repeat Simple_repeat 5 24 0 1 1367 235 345 158 26 chr5 102552751 102553151 -49984108 + L2 LINE L2 525 1006 -2413 1 1367 210 274 165 12 chr5 102553420 102553505 -49983754 + L2 LINE L2 1503 1600 -1819 1 1367 323 317 88 76 chr5 102553980 102554308 -49982951 + L2 LINE L2 1948 2279 -1140 1 1367 208 266 0 71 chr5 102555380 102555465 -49981794 + CT-rich Low_complexity Low_complexity 2 80 0 1 1367 206 216 0 0 chr5 102555983 102556020 -49981239 + polypurine Low_complexity Low_complexity 3 39 0 1 1367 2688 304 88 69 chr5 102556315 102558126 -49979133 - Charlie12 DNA MER1_type -4 2869 1025 1 1367 2285 173 41 24 chr5 102558327 102558426 -49978833 - RLTR16 LTR ERVK 0 505 413 1 1367 477 0 0 0 chr5 102558426 102558479 -49978780 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1367 2285 173 41 24 chr5 102558479 102558872 -49978387 - RLTR16 LTR ERVK -93 412 7 1 1367 563 271 38 24 chr5 102558935 102559147 -49978112 - Charlie12 DNA MER1_type -2034 839 625 1 1367 536 131 0 0 chr5 102559276 102559360 -49977899 + B3 SINE B2 2 85 -131 1 1367 365 355 0 51 chr5 102559395 102559573 -49977686 - Charlie12 DNA MER1_type -2280 593 425 1 1367 1368 189 119 35 chr5 102559578 102559682 -49977577 - ORR1D1 LTR MaLR 0 374 271 1 1367 2927 35 6 0 chr5 102559682 102560026 -49977233 + ORR1A1 LTR MaLR 1 346 0 1 1367 1368 189 119 35 chr5 102560026 102560116 -49977143 - ORR1D1 LTR MaLR -104 270 168 1 1367 483 18 0 0 chr5 102560116 102560172 -49977087 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1367 1368 189 119 35 chr5 102560172 102560321 -49976938 - ORR1D1 LTR MaLR -207 167 2 1 1367 343 277 168 0 chr5 102560346 102560465 -49976794 + RMER30 DNA MER1_type 35 173 -29 1 1367 1579 135 57 108 chr5 102560494 102560954 -49976305 - RMER17C LTR ERVK -519 439 16 1 1367 2326 138 42 9 chr5 102562288 102562718 -49974541 + RLTR31B_Mm LTR ERVK 7 450 -107 1 1367 3066 74 5 12 chr5 102563576 102563985 -49973274 + MTB_Mm LTR MaLR 1 406 -1 1 1367 345 186 0 0 chr5 102564184 102564254 -49973005 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1367 712 271 18 12 chr5 102564255 102564423 -49972836 - B4A SINE B4 0 292 124 1 1367 578 184 18 0 chr5 102564761 102564875 -49972384 - B3 SINE B2 -100 116 1 1 1367 1115 43 25 0 chr5 102565516 102565678 -49971581 + (TCTA)n Simple_repeat Simple_repeat 3 168 0 1 1367 613 306 48 0 chr5 102565679 102565885 -49971374 - ID_B1 SINE B4 -7 217 2 1 1367 183 326 67 11 chr5 102566040 102566130 -49971129 - MIRb SINE MIR -48 220 126 1 1367 405 0 0 0 chr5 102566402 102566447 -49970812 + (GA)n Simple_repeat Simple_repeat 1 45 0 1 1367 2618 85 3 5 chr5 102566712 102567092 -49970167 - MTB LTR MaLR 0 400 22 1 1367 662 24 0 0 chr5 102567082 102567165 -49970094 + MTB_Mm LTR MaLR 325 407 0 1 1367 238 61 0 0 chr5 102567183 102567216 -49970043 - MTC-int LTR MaLR -1155 103 71 1 1367 790 70 20 47 chr5 102567222 102567371 -49969888 + MTB_Mm-int LTR MaLR 954 1098 0 1 1367 643 83 0 0 chr5 102567371 102567467 -49969792 + MTB_Mm LTR MaLR 1 96 -311 1 1367 1740 103 0 0 chr5 102567462 102567715 -49969544 - MTB LTR MaLR -147 253 1 1 1367 876 146 0 0 chr5 102567936 102568100 -49969159 + (CCCTAA)n Simple_repeat Simple_repeat 6 169 0 1 1367 456 19 0 0 chr5 102568574 102568627 -49968632 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1367 1071 209 43 20 chr5 102569880 102570134 -49967125 - MERVL_2A-int LTR ERVL -309 5452 5193 1 1367 261 0 0 0 chr5 102570209 102570238 -49967021 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1367 664 292 75 65 chr5 102570428 102570746 -49966513 - MTD LTR MaLR -71 348 9 1 1367 291 121 0 0 chr5 102570808 102570866 -49966393 + (T)n Simple_repeat Simple_repeat 1 58 0 1 1367 518 250 88 39 chr5 102571081 102571285 -49965974 + B4A SINE B4 1 214 -78 1 1367 2306 155 63 2 chr5 102571313 102571708 -49965551 + MTC LTR MaLR 3 421 0 1 1367 407 19 19 0 chr5 102571757 102571809 -49965450 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1367 1645 268 115 45 chr5 102572705 102573542 -49963717 - L1_Mur3 LINE L1 -1355 4525 3631 1 1367 979 321 72 45 chr5 102573563 102574328 -49962931 - L1_Mur3 LINE L1 -3059 3087 2264 1 1367 4480 100 9 86 chr5 102574464 102575274 -49961985 - RMER17A LTR ERVK -4 747 1 1 1367 351 298 32 42 chr5 102575721 102575914 -49961345 + MLT1A LTR MaLR 186 363 -27 1 1367 445 213 65 78 chr5 102576686 102576839 -49960420 - RSINE1 SINE B4 -13 152 2 1 1367 1628 200 92 19 chr5 102577136 102577639 -49959620 + RLTR20B3 LTR ERVK 1 559 -4 1 1367 446 166 13 41 chr5 102578210 102578318 -49958941 + B1F SINE Alu 16 118 -2 1 1367 380 144 21 24 chr5 102579309 102579401 -49957858 + MTD LTR MaLR 306 419 0 1 1367 3118 64 20 2 chr5 102579409 102579802 -49957457 + MTB LTR MaLR 1 400 0 1 1367 267 333 0 0 chr5 102579895 102579976 -49957283 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1367 426 309 84 112 chr5 102579977 102580058 -49957201 - B4A SINE B4 -2 290 221 1 1367 1019 146 47 36 chr5 102580058 102580250 -49957009 - B2_Mm2 SINE B2 -1 194 1 1 1367 426 309 84 112 chr5 102580250 102580383 -49956876 - B4A SINE B4 -72 220 82 1 1367 542 111 41 7 chr5 102580384 102580489 -49956770 - B1_Mm SINE Alu 0 147 1 1 1367 257 257 17 110 chr5 102580489 102580584 -49956675 - B4 SINE B4 -208 84 1 1 1367 192 77 0 0 chr5 102581618 102581644 -49955615 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1367 5737 127 29 7 chr5 102581699 102582703 -49954556 - Lx5 LINE L1 -566 6894 5533 1 1367 597 52 0 0 chr5 102582916 102582993 -49954266 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 1367 342 196 0 0 chr5 102582993 102583085 -49954174 + (TATG)n Simple_repeat Simple_repeat 2 93 0 1 1367 614 297 107 16 chr5 102583633 102583941 -49953318 + L1M2 LINE L1 4564 4899 -1244 1 1367 581 182 352 0 chr5 102583941 102584100 -49953159 + B3 SINE B2 2 216 0 1 1367 258 316 35 9 chr5 102584123 102584238 -49953021 + L1M2 LINE L1 4885 5002 -1141 1 1367 647 330 39 4 chr5 102584762 102584985 -49952274 + B4A SINE B4 2 232 -60 1 1367 973 133 12 18 chr5 102584985 102585154 -49952105 + B2_Mm2 SINE B2 1 168 -27 1 1367 1587 145 48 57 chr5 102585656 102585701 -49951558 - MT2B LTR ERVL 0 601 559 1 1367 611 13 13 0 chr5 102585701 102585777 -49951482 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 1 1367 1587 157 89 48 chr5 102585777 102586161 -49951098 - MT2B LTR ERVL -43 558 2 1 1367 254 95 24 0 chr5 102587461 102587503 -49949756 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 1 1367 378 0 0 0 chr5 102587948 102587990 -49949269 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1367 345 102 0 0 chr5 102589771 102589830 -49947429 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1367 637 248 14 7 chr5 102589832 102589978 -49947281 - B3A SINE B2 -49 149 3 1 1367 365 0 0 22 chr5 102590113 102590159 -49947100 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1 1367 261 385 9 0 chr5 102590282 102590391 -49946868 - MTEb LTR MaLR -34 345 236 1 1367 4474 148 58 13 chr5 102590413 102590532 -49946727 + L1_Mur3 LINE L1 1930 2057 -3823 1 1367 399 21 0 0 chr5 102590532 102590580 -49946679 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1367 4474 148 58 13 chr5 102590580 102591309 -49945950 + L1_Mur3 LINE L1 2058 2816 -3064 1 1367 9501 147 19 26 chr5 102593380 102595127 -49942132 + L1_Mur3 LINE L1 2796 4530 -1350 1 1367 352 151 46 81 chr5 102595128 102595259 -49942000 + ORR1B1 LTR MaLR 1 144 -250 1 1367 1844 160 52 31 chr5 102595270 102595656 -49941603 + ORR1B1 LTR MaLR 1 394 0 1 1367 845 124 62 0 chr5 102595656 102595801 -49941458 + L1_Mur3 LINE L1 4527 4680 -1200 1 1367 938 201 28 72 chr5 102596158 102596449 -49940810 + L1_Mur3 LINE L1 984 1266 -6462 1 1367 291 21 0 59 chr5 102596449 102596500 -49940759 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 1367 621 154 23 134 chr5 102596500 102596531 -49940728 + L1_Mur3 LINE L1 1266 1288 -5798 1 1367 593 226 94 72 chr5 102596528 102596805 -49940454 + L1_Mur3 LINE L1 3373 3655 -2222 1 1367 666 165 0 8 chr5 102596802 102596930 -49940329 + L1_Mur3 LINE L1 4514 4640 -1237 1 1367 268 276 31 0 chr5 102597765 102597863 -49939396 + (TCCA)n Simple_repeat Simple_repeat 1 101 0 1 1367 827 131 14 0 chr5 102597863 102598008 -49939251 + (TTTC)n Simple_repeat Simple_repeat 1 147 0 1 1367 364 126 15 0 chr5 102598002 102598139 -49939120 + (TCCA)n Simple_repeat Simple_repeat 1 139 0 1 1367 253 262 0 15 chr5 102598140 102598257 -49939002 + CT-rich Low_complexity Low_complexity 1 115 0 1 1367 5655 75 9 13 chr5 102598712 102599471 -49937788 + L1_Mus3 LINE L1 5883 6638 0 1 1367 557 28 14 0 chr5 102599525 102599596 -49937663 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1367 260 338 41 14 chr5 102599627 102599774 -49937485 + MER5A1 DNA MER1_type 10 160 -6 1 1367 1421 281 94 41 chr5 102599873 102600489 -49936770 + Lx8 LINE L1 6797 7445 -28 1 1367 570 241 20 33 chr5 102600526 102600676 -49936583 + B1_Mur1 SINE Alu 2 149 0 1 1367 639 246 0 0 chr5 102600703 102600882 -49936377 + GA-rich Low_complexity Low_complexity 1 179 0 1 1367 545 273 160 62 chr5 102601944 102602017 -49935242 - L1_Rod LINE L1 -10 5837 5749 1 1367 324 0 0 0 chr5 102602017 102602053 -49935206 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1 1367 545 273 160 62 chr5 102602053 102602309 -49934950 - L1_Rod LINE L1 -99 5748 5473 1 1367 3173 29 65 3 chr5 102602309 102602692 -49934567 + MTB_Mm LTR MaLR 1 407 0 2 1367 545 273 160 62 chr5 102602692 102602748 -49934511 - L1_Rod LINE L1 -375 5472 5414 1 1367 7545 60 24 18 chr5 102602750 102602761 -49934498 - L1VL2 LINE L1 -1559 2056 2046 2 1367 723 24 0 0 chr5 102602761 102602846 -49934413 + (TTC)n Simple_repeat Simple_repeat 2 86 0 2 1367 7545 75 54 14 chr5 102602846 102604718 -49932541 - L1VL2 LINE L1 -1570 2045 94 2 1367 764 148 22 0 chr5 102604725 102604860 -49932399 - B1_Mur4 SINE Alu -2 148 11 2 1367 342 280 19 9 chr5 102605368 102605476 -49931783 - Tigger5 DNA MER2_type -7 2399 2291 2 1367 3822 72 28 8 chr5 102606043 102606592 -49930667 - L1Md_F2 LINE L1 0 6582 6062 2 1367 345 346 18 55 chr5 102608037 102608202 -49929057 - MTEa LTR MaLR -220 159 1 2 1367 598 245 87 45 chr5 102608969 102609281 -49927978 + MLT1A1 LTR MaLR 21 408 0 2 1367 369 317 0 0 chr5 102609565 102609685 -49927574 + MLT1A1-int LTR MaLR 29 148 -1587 2 1367 272 286 116 23 chr5 102610112 102610241 -49927018 + MLT1A1-int LTR MaLR 1247 1387 -348 2 1367 799 111 0 0 chr5 102610514 102610631 -49926628 + RLTR23 LTR ERV1 314 430 0 2 1367 455 287 161 21 chr5 102610656 102610898 -49926361 + MLT1A1-int LTR MaLR 1373 1648 -87 2 1367 292 270 132 23 chr5 102610898 102611027 -49926232 - L1MC3 LINE L1 -657 7128 6986 2 1367 1188 241 45 33 chr5 102612030 102612364 -49924895 + Lx9 LINE L1 6974 7311 -333 2 1367 246 116 0 0 chr5 102612406 102612449 -49924810 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1367 369 197 16 33 chr5 102612450 102612571 -49924688 + Lx9 LINE L1 7526 7644 0 2 1367 866 279 29 25 chr5 102613476 102613755 -49923504 - B4 SINE B4 0 292 13 2 1367 505 123 58 0 chr5 102613848 102613986 -49923273 + (TAGA)n Simple_repeat Simple_repeat 1 146 0 2 1367 226 322 106 28 chr5 102614001 102614180 -49923079 - MLT1L LTR MaLR -291 319 127 2 1367 180 0 0 0 chr5 102614658 102614678 -49922581 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 2 1367 1204 275 106 52 chr5 102614964 102615076 -49922183 - Lx8 LINE L1 -2 7471 7347 2 1367 180 77 0 0 chr5 102615076 102615102 -49922157 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2 1367 1204 275 106 52 chr5 102615102 102615510 -49921749 - Lx8 LINE L1 -127 7346 6924 2 1367 207 0 0 0 chr5 102615707 102615730 -49921529 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1367 3000 88 28 17 chr5 102615731 102616202 -49921057 - LTRIS2 LTR ERV1 -88 476 1 2 1367 824 207 125 0 chr5 102616203 102616411 -49920848 - MuRRS4-int LTR ERV1 -42 5021 4788 2 1367 2964 236 25 25 chr5 102616402 102617111 -49920148 - MuRRS4-int LTR ERV1 -792 4271 3563 2 1367 8880 108 43 29 chr5 102617436 102618863 -49918396 - MuRRS4-int LTR ERV1 -2030 3033 1640 2 1367 1389 219 107 25 chr5 102618842 102619484 -49917775 - MuRRS4-int LTR ERV1 -3619 1444 750 2 1367 2185 125 27 9 chr5 102619472 102619803 -49917456 - RMER16-int LTR ERVK -3963 1443 1107 2 1367 38844 28 0 0 chr5 102619819 102626454 -49910805 - L1Md_T LINE L1 0 6585 1 2 1367 3213 102 9 2 chr5 102626454 102626898 -49910361 - RMER16-int LTR ERVK -4283 1123 677 2 1367 615 113 147 9 chr5 102626919 102627035 -49910224 - RMER16-int LTR ERVK -5134 272 141 2 1367 259 200 30 104 chr5 102627492 102627626 -49909633 - MuRRS4-int LTR ERV1 -3574 124 1 2 1367 987 105 49 12 chr5 102627626 102627790 -49909469 - LTRIS2 LTR ERV1 0 564 395 2 1367 303 28 0 0 chr5 102628263 102628299 -49908960 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1367 470 295 46 57 chr5 102628358 102628552 -49908707 - MTE2a LTR MaLR -17 362 171 2 1368 595 261 0 0 chr5 102629646 102629765 -49907494 + RSINE1 SINE B4 1 119 -46 2 1368 438 154 0 0 chr5 102629803 102629881 -49907378 + (CAG)n Simple_repeat Simple_repeat 1 78 0 2 1368 225 108 0 0 chr5 102630473 102630510 -49906749 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1368 244 269 15 15 chr5 102630510 102630578 -49906681 + G-rich Low_complexity Low_complexity 1 68 0 2 1368 587 94 0 10 chr5 102630578 102630675 -49906584 + (CAG)n Simple_repeat Simple_repeat 2 97 0 2 1368 240 35 0 0 chr5 102631680 102631709 -49905550 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2 1368 32 0 0 0 chr5 102631716 102631748 -49905511 + AT_rich Low_complexity Low_complexity 1 32 0 2 1368 1050 115 18 0 chr5 102631756 102631921 -49905338 + B2_Mm2 SINE B2 1 168 -27 2 1368 414 39 0 0 chr5 102632155 102632207 -49905052 + (TTCA)n Simple_repeat Simple_repeat 4 55 0 2 1368 3142 147 30 11 chr5 102632310 102632875 -49904384 - RMER12 LTR ERVK -746 576 1 2 1368 239 128 64 0 chr5 102635578 102635625 -49901634 - PB1D7 SINE Alu -1 119 70 2 1368 743 301 19 0 chr5 102635583 102635792 -49901467 - ID_B1 SINE B4 -6 218 6 2 1368 405 0 0 0 chr5 102635877 102635922 -49901337 + (TAA)n Simple_repeat Simple_repeat 3 47 0 2 1368 360 0 0 0 chr5 102637335 102637375 -49899884 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1368 231 157 19 19 chr5 102637785 102637837 -49899422 + G-rich Low_complexity Low_complexity 2 53 0 2 1368 470 246 44 0 chr5 102637869 102637983 -49899276 + PB1D7 SINE Alu 1 119 -1 2 1368 657 25 0 0 chr5 102638910 102638989 -49898270 + (CA)n Simple_repeat Simple_repeat 1 79 0 2 1368 710 209 66 35 chr5 102639225 102639423 -49897836 - RMER10B LTR ERVL 0 398 195 2 1368 27 29 0 0 chr5 102639482 102639516 -49897743 + AT_rich Low_complexity Low_complexity 1 34 0 2 1368 847 188 191 11 chr5 102639521 102639704 -49897555 - B3 SINE B2 0 216 1 2 1368 327 162 0 0 chr5 102641953 102642033 -49895226 + T-rich Low_complexity Low_complexity 1 80 0 2 1368 691 219 14 14 chr5 102642036 102642184 -49895075 - B1_Mus1 SINE Alu 0 148 1 2 1368 509 224 179 0 chr5 102642279 102642413 -49894846 - B3 SINE B2 -4 212 55 2 1368 315 368 67 17 chr5 102642458 102642696 -49894563 + Tigger9b DNA MER2_type 30 279 -345 2 1368 222 150 0 0 chr5 102643258 102643298 -49893961 + (TCTCCC)n Simple_repeat Simple_repeat 5 44 0 2 1368 220 228 17 17 chr5 102643300 102643358 -49893901 + (TATG)n Simple_repeat Simple_repeat 3 60 0 2 1368 536 294 105 44 chr5 102643363 102643658 -49893601 - L1MA4A LINE L1 -377 5926 5614 2 1368 2005 301 86 33 chr5 102643854 102645010 -49892249 - L1MA4A LINE L1 -562 5627 4367 2 1368 1106 94 112 0 chr5 102645010 102645180 -49892079 - B2_Mm2 SINE B2 -6 189 1 2 1368 2005 299 86 32 chr5 102645180 102645238 -49892021 - L1MA4A LINE L1 -1744 4399 4346 2 1368 558 0 0 0 chr5 102645238 102645300 -49891959 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 2 1368 2005 299 86 32 chr5 102645300 102645689 -49891570 - L1MA4A LINE L1 -1798 4345 3916 2 1368 201 177 38 0 chr5 102645711 102645790 -49891469 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 2 1368 391 245 10 10 chr5 102645876 102645979 -49891280 + MTD LTR MaLR 18 120 -299 2 1368 36354 64 2 2 chr5 102645979 102652163 -49885096 - L1Md_F2 LINE L1 -2 6583 307 2 1368 503 222 43 15 chr5 102652163 102652358 -49884901 + MTD LTR MaLR 104 416 -3 2 1368 396 0 0 0 chr5 102652414 102652458 -49884801 + (T)n Simple_repeat Simple_repeat 1 44 0 2 1368 1033 82 7 45 chr5 102652458 102652612 -49884647 - B1_Mus1 SINE Alu 0 148 1 2 1368 481 261 142 52 chr5 102653171 102653438 -49883821 - B4A SINE B4 0 292 2 2 1368 379 301 97 8 chr5 102653744 102653868 -49883391 - LTR16B1 LTR ERVL -5 475 341 2 1368 2308 82 0 0 chr5 102653904 102654222 -49883037 - ORR1A2 LTR MaLR -9 318 1 2 1368 304 86 33 33 chr5 102654457 102654517 -49882742 + URR1B DNA MER1_type 111 170 -55 2 1368 228 298 70 0 chr5 102655323 102655437 -49881822 + MER97b DNA MER1_type? 646 767 -286 2 1368 263 279 37 28 chr5 102655462 102655569 -49881690 + PB1D10 SINE Alu 5 112 -5 2 1368 247 275 139 77 chr5 102655698 102655907 -49881352 + Lx8 LINE L1 7184 7405 -68 2 1368 256 343 56 21 chr5 102655960 102656103 -49881156 + MER97b DNA MER1_type? 889 1036 -17 2 1368 404 184 26 26 chr5 102657037 102657279 -49879980 + (TG)n Simple_repeat Simple_repeat 1 242 0 2 1368 367 153 30 30 chr5 102657305 102657440 -49879819 + (TG)n Simple_repeat Simple_repeat 2 136 0 2 1368 320 222 33 0 chr5 102657487 102657577 -49879682 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 2 1368 426 262 40 3 chr5 102657698 102657824 -49879435 - B4A SINE B4 -82 142 4 2 1368 289 124 30 44 chr5 102657844 102657919 -49879340 - MTE2b LTR MaLR -1 378 291 2 1368 757 71 97 0 chr5 102657915 102658028 -49879231 + B1_Mus1 SINE Alu 25 148 0 2 1368 333 117 0 50 chr5 102658028 102658127 -49879132 + (CAAA)n Simple_repeat Simple_repeat 3 96 0 2 1368 439 260 57 43 chr5 102658283 102658526 -49878733 - MTE2b LTR MaLR -166 253 1 2 1368 3713 231 146 57 chr5 102659958 102661620 -49875639 + RLTR22_Mur LTR ERVK 1 1810 -38 2 1368 496 286 15 22 chr5 102663101 102663237 -49874022 + ID_B1 SINE B4 90 224 0 2 1368 270 0 0 0 chr5 102663248 102663278 -49873981 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 2 1368 486 300 8 0 chr5 102663289 102663409 -49873850 + RSINE1 SINE B4 4 124 -41 2 1368 698 0 12 0 chr5 102663409 102663491 -49873768 + (CA)n Simple_repeat Simple_repeat 2 84 0 2 1368 477 0 0 0 chr5 102663491 102663543 -49873716 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1368 817 277 19 0 chr5 102663759 102663965 -49873294 + B4A SINE B4 1 210 -82 2 1368 1768 60 0 0 chr5 102663966 102664181 -49873078 - L1_Mus1 LINE L1 -228 6339 6125 2 1368 1823 28 0 5 chr5 102664181 102664397 -49872862 + L1_Mus1 LINE L1 6351 6565 -2 2 1368 300 286 0 71 chr5 102664408 102664506 -49872753 + B4A SINE B4 202 292 0 2 1368 630 201 199 33 chr5 102664782 102664993 -49872266 + Lx9 LINE L1 7399 7644 0 2 1368 263 350 61 37 chr5 102665538 102665701 -49871558 + B4 SINE B4 2 168 -124 2 1368 378 0 0 0 chr5 102666354 102666396 -49870863 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1368 273 203 14 14 chr5 102666483 102666553 -49870706 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1368 618 51 0 0 chr5 102667206 102667284 -49869975 + (TCCC)n Simple_repeat Simple_repeat 3 80 0 2 1368 387 282 112 23 chr5 102667307 102667521 -49869738 + L1MDa LINE L1 1800 2032 -4601 2 1368 1215 260 131 31 chr5 102667677 102668312 -49868947 + L1MDa LINE L1 2947 3644 -2893 2 1368 439 349 80 65 chr5 102668717 102669054 -49868205 + MER74A LTR ERVL 16 357 -201 2 1368 258 322 34 11 chr5 102669033 102669121 -49868138 - MTEb LTR MaLR -11 368 279 2 1368 305 214 10 0 chr5 102669224 102669322 -49867937 + G-rich Low_complexity Low_complexity 5 103 0 2 1368 668 185 0 48 chr5 102670143 102670268 -49866991 + PB1D9 SINE Alu 2 120 0 2 1368 224 214 0 0 chr5 102670321 102670377 -49866882 + (CCA)n Simple_repeat Simple_repeat 3 58 0 2 1368 724 276 5 52 chr5 102670378 102670550 -49866709 + B3A SINE B2 1 164 -34 2 1368 225 0 0 0 chr5 102670550 102670575 -49866684 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1368 724 278 21 60 chr5 102670575 102670620 -49866639 + B3A SINE B2 164 211 -5 2 1368 1238 322 79 17 chr5 102670780 102671047 -49866212 - L1MD1 LINE L1 -8 6234 5943 2 1368 333 0 0 0 chr5 102671047 102671084 -49866175 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1368 1238 322 79 17 chr5 102671084 102671536 -49865723 - L1MD1 LINE L1 -300 5942 5472 2 1368 470 294 0 0 chr5 102671542 102671651 -49865608 - PB1D10 SINE Alu -5 112 4 2 1368 2555 49 31 0 chr5 102672595 102672886 -49864373 - IAPEY_LTR LTR ERVK 0 385 95 2 1368 5479 33 0 0 chr5 102672886 102673490 -49863769 - L1Md_T LINE L1 0 6582 5979 2 1368 2555 49 31 0 chr5 102673490 102673522 -49863737 - IAPEY_LTR LTR ERVK -291 94 53 2 1368 918 0 0 0 chr5 102673535 102673637 -49863622 + (TTC)n Simple_repeat Simple_repeat 3 104 0 2 1368 244 331 7 22 chr5 102673637 102673769 -49863490 - L1MD1 LINE L1 -900 5246 5116 2 1368 414 0 0 0 chr5 102674289 102674335 -49862924 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1368 501 84 0 0 chr5 102674449 102674520 -49862739 + (GGA)n Simple_repeat Simple_repeat 3 73 0 3 1368 1101 149 0 3 chr5 102675784 102676140 -49861119 + (TG)n Simple_repeat Simple_repeat 1 355 0 3 1368 561 293 43 49 chr5 102676935 102677152 -49860107 + B3A SINE B2 1 216 0 3 1368 656 130 24 21 chr5 102677441 102677772 -49859487 + (CA)n Simple_repeat Simple_repeat 1 332 0 3 1368 772 281 19 9 chr5 102679123 102679335 -49857924 - ID_B1 SINE B4 -10 214 1 3 1368 630 326 100 48 chr5 102679518 102680188 -49857071 - L1MB3 LINE L1 -24 6159 5455 3 1368 776 148 5 23 chr5 102680192 102680355 -49856904 + RMER17D LTR ERVK 751 887 -19 3 1368 303 317 66 36 chr5 102682315 102682482 -49854777 - MLT1B LTR MaLR -38 352 181 3 1368 354 239 0 0 chr5 102682482 102682574 -49854685 + (TG)n Simple_repeat Simple_repeat 2 93 0 3 1368 302 317 108 0 chr5 102682612 102682732 -49854527 - MLT1B LTR MaLR -241 133 1 3 1368 345 47 0 0 chr5 102682810 102682853 -49854406 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 3 1368 25 0 0 0 chr5 102683169 102683194 -49854065 + AT_rich Low_complexity Low_complexity 1 25 0 3 1368 401 0 20 0 chr5 102683272 102683321 -49853938 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 3 1368 180 0 0 0 chr5 102683788 102683808 -49853451 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 3 1368 238 297 40 0 chr5 102684119 102684193 -49853066 - L1MEd LINE L1 -5108 1011 935 3 1368 464 186 63 103 chr5 102684600 102684729 -49852530 - Lx9 LINE L1 -1 7643 7520 3 1368 423 0 0 0 chr5 102684729 102684776 -49852483 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 3 1368 464 186 63 103 chr5 102684776 102684820 -49852439 - Lx9 LINE L1 -125 7519 7477 3 1368 33 0 0 0 chr5 102684824 102684857 -49852402 + AT_rich Low_complexity Low_complexity 1 33 0 3 1368 799 288 19 9 chr5 102685053 102685267 -49851992 - B3 SINE B2 0 216 1 3 1368 466 265 48 12 chr5 102685443 102685702 -49851557 + (TCTCTG)n Simple_repeat Simple_repeat 1 268 0 3 1368 396 243 53 20 chr5 102685760 102685961 -49851298 + (TCTCTG)n Simple_repeat Simple_repeat 1 207 0 3 1368 447 185 186 40 chr5 102686243 102686367 -49850892 - B1F SINE Alu -7 142 1 3 1368 353 193 62 116 chr5 102687106 102687235 -49850024 - MER5A1 DNA MER1_type -43 123 2 3 1368 485 265 77 136 chr5 102687617 102687735 -49849524 - B4A SINE B4 0 292 191 3 1368 207 0 0 0 chr5 102687735 102687758 -49849501 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1368 485 265 77 136 chr5 102687758 102687949 -49849310 - B4A SINE B4 -102 190 1 3 1368 486 275 42 7 chr5 102687989 102688132 -49849127 - B1F SINE Alu -1 148 1 3 1368 295 362 0 8 chr5 102688497 102688614 -49848645 - Arthur1B DNA Tip100 -583 642 527 3 1368 357 342 83 79 chr5 102688638 102688879 -49848380 - Arthur1B DNA Tip100 -790 435 194 3 1368 180 0 0 0 chr5 102689088 102689108 -49848151 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1368 225 148 93 0 chr5 102689162 102689216 -49848043 - ORR1E LTR MaLR -248 111 53 3 1368 241 324 169 0 chr5 102689263 102689399 -49847860 - Arthur1B DNA Tip100 -1042 183 25 3 1368 1969 197 191 20 chr5 102689736 102690243 -49847016 + RMER19B LTR ERVK 309 902 0 3 1368 474 18 0 0 chr5 102690416 102690471 -49846788 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1368 275 330 24 73 chr5 102690471 102690595 -49846664 + Lx8 LINE L1 6208 6325 -1148 3 1368 377 350 14 0 chr5 102691724 102691864 -49845395 - B1F SINE Alu 0 149 8 3 1368 252 333 13 77 chr5 102691864 102691880 -49845379 - ID_B1 SINE B4 0 224 79 3 1368 1991 145 19 12 chr5 102691951 102692273 -49844986 - ORR1A4 LTR MaLR 0 329 6 3 1368 271 317 99 26 chr5 102692387 102692578 -49844681 + L1MC LINE L1 3562 3766 -2380 3 1368 475 286 69 49 chr5 102692721 102693069 -49844190 + L1M4 LINE L1 3792 4145 -2001 3 1368 3562 35 2 2 chr5 102693132 102693528 -49843731 - MTA_Mm LTR MaLR 0 396 1 3 1368 323 312 19 77 chr5 102693662 102693818 -49843441 - B4 SINE B4 -145 147 1 3 1368 722 277 62 0 chr5 102693952 102694147 -49843112 + B3 SINE B2 10 216 0 3 1368 23 33 0 0 chr5 102694541 102694571 -49842688 + AT_rich Low_complexity Low_complexity 1 30 0 3 1368 951 240 100 9 chr5 102694589 102694820 -49842439 - Lx6 LINE L1 -27 7433 7182 3 1368 596 283 199 34 chr5 102696724 102697309 -49839950 - L1MB2 LINE L1 -117 6051 5375 3 1368 225 279 105 0 chr5 102697382 102697468 -49839791 - L1MB2 LINE L1 -2721 3419 3325 3 1368 1914 237 53 27 chr5 102697580 102698127 -49839132 - RCHARR1 DNA MER1_type -2 972 412 3 1368 423 309 103 24 chr5 102698732 102698762 -49838497 - L1MA5 LINE L1 -1542 5931 5905 3 1368 360 0 0 0 chr5 102698762 102698802 -49838457 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1368 735 294 169 37 chr5 102698802 102699293 -49837966 - L1MA5 LINE L1 -374 5926 5306 3 1368 855 29 0 0 chr5 102699293 102699395 -49837864 + (TCCC)n Simple_repeat Simple_repeat 3 104 0 3 1368 1034 144 0 6 chr5 102699403 102699584 -49837675 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3 1368 735 298 158 41 chr5 102699584 102699860 -49837399 - L1MA5 LINE L1 -549 5298 5002 3 1368 527 155 123 28 chr5 102699971 102700077 -49837182 - PB1D9 SINE Alu -3 117 2 3 1368 542 214 0 33 chr5 102700180 102700364 -49836895 + (TATG)n Simple_repeat Simple_repeat 2 179 0 3 1368 1770 313 185 42 chr5 102700399 102701440 -49835819 - Lx8 LINE L1 -184 7289 6100 3 1368 1207 262 63 11 chr5 102701440 102701787 -49835472 - ORR1D2 LTR MaLR -5 365 1 3 1368 521 261 62 97 chr5 102701886 102702095 -49835164 - Lx7 LINE L1 -1715 5981 5783 3 1368 483 152 0 0 chr5 102702095 102702174 -49835085 - L1_Mus2 LINE L1 0 6566 6488 3 1368 521 261 62 97 chr5 102702174 102702253 -49835006 - Lx7 LINE L1 -1914 5782 5703 3 1368 520 237 63 3 chr5 102702266 102702473 -49834786 - L1MA5 LINE L1 -1175 4968 4747 3 1368 543 128 0 0 chr5 102702473 102702559 -49834700 + (CATTC)n Simple_repeat Simple_repeat 4 89 0 3 1368 27 0 0 0 chr5 102702604 102702631 -49834628 + AT_rich Low_complexity Low_complexity 1 27 0 3 1368 441 0 0 0 chr5 102702631 102702680 -49834579 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1368 583 285 44 0 chr5 102702682 102702819 -49834440 - RSINE1 SINE B4 -19 146 4 3 1368 2497 296 70 38 chr5 102702845 102704197 -49833062 - L1MA5 LINE L1 -1426 4714 3319 3 1368 4327 154 36 6 chr5 102704246 102704918 -49832341 + RLTR17 LTR ERVK 1 692 0 3 1368 479 125 0 53 chr5 102704918 102704994 -49832265 + RMER3D-int LTR ERVK 1 72 -2770 3 1368 401 236 165 4 chr5 102705051 102705243 -49832016 - L1MA5 LINE L1 -2605 3242 3017 3 1368 1422 95 26 0 chr5 102705249 102705438 -49831821 - B2_Mm2 SINE B2 0 195 2 3 1368 6678 141 27 10 chr5 102705438 102706520 -49830739 - L1_Mur2 LINE L1 -184 5693 4593 3 1368 396 0 0 0 chr5 102707683 102707727 -49829532 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1368 10850 248 75 59 chr5 102708358 102709399 -49827860 - Lx2B LINE L1 -1084 5916 4798 3 1368 965 9 0 9 chr5 102709399 102709514 -49827745 + (TTC)n Simple_repeat Simple_repeat 1 114 0 3 1368 10850 247 73 61 chr5 102709514 102712710 -49824549 - Lx2B LINE L1 -1050 4797 1586 3 1368 1047 269 65 54 chr5 102712775 102713003 -49824256 + MTD LTR MaLR 1 218 -201 3 1368 192 97 0 0 chr5 102713003 102713034 -49824225 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1368 1047 269 65 54 chr5 102713034 102713158 -49824101 + MTD LTR MaLR 219 356 -63 3 1368 1257 290 93 9 chr5 102713441 102713997 -49823262 + L1_Mur3 LINE L1 4962 5564 -316 3 1368 423 87 0 0 chr5 102714051 102714120 -49823139 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1368 432 0 0 0 chr5 102714172 102714220 -49823039 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1368 1225 153 68 46 chr5 102716491 102716710 -49820549 - URR1B DNA MER1_type -1 224 1 3 1368 756 205 65 133 chr5 102717116 102717364 -49819895 + ORR1D1 LTR MaLR 1 231 -143 3 1368 789 216 19 31 chr5 102717783 102717991 -49819268 + ORR1C2 LTR MaLR 159 382 -2 3 1368 468 213 73 9 chr5 102718095 102718204 -49819055 - B1_Mur1 SINE Alu -25 124 9 3 1368 811 241 4 0 chr5 102718954 102719121 -49818138 - MTE2b LTR MaLR -204 175 3 3 1368 233 240 24 89 chr5 102719190 102719359 -49817900 + (GTATG)n Simple_repeat Simple_repeat 2 159 0 3 1368 267 337 42 0 chr5 102719455 102719550 -49817709 - LTR85b LTR Gypsy? -230 554 456 3 1368 501 285 7 21 chr5 102719735 102719875 -49817384 - ID_B1 SINE B4 -7 217 80 3 1368 195 42 0 0 chr5 102720483 102720507 -49816752 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1368 863 276 86 15 chr5 102720540 102720808 -49816451 - B4 SINE B4 -4 288 2 3 1368 386 284 0 10 chr5 102721915 102722018 -49815241 + MTE2b LTR MaLR 18 119 -260 3 1368 1265 255 125 11 chr5 102722036 102722405 -49814854 - MTC LTR MaLR -10 411 1 3 1368 389 315 7 14 chr5 102722405 102722549 -49814710 + MTE2b LTR MaLR 179 321 -58 3 1368 255 235 14 29 chr5 102723203 102723273 -49813986 - ID4 SINE ID -13 70 2 3 1368 1252 168 13 18 chr5 102723515 102723739 -49813520 - URR1B DNA MER1_type 0 225 3 3 1368 396 0 0 0 chr5 102724020 102724064 -49813195 + (TAA)n Simple_repeat Simple_repeat 1 44 0 3 1368 548 334 80 53 chr5 102724944 102725320 -49811939 + Charlie1a DNA MER1_type 5 390 -1065 3 1368 573 290 75 48 chr5 102726166 102726345 -49810914 + L1_Mur3 LINE L1 874 1069 -6659 3 1368 2065 130 3 58 chr5 102726345 102726689 -49810570 - ORR1A3 LTR MaLR 0 326 2 3 1368 7651 237 53 27 chr5 102726689 102727126 -49810133 + L1_Mur3 LINE L1 1070 1503 -4377 3 1368 1019 101 5 27 chr5 102727126 102727310 -49809949 + (GAA)n Simple_repeat Simple_repeat 1 180 0 3 1368 7651 214 44 18 chr5 102727310 102727851 -49809408 + L1_Mur3 LINE L1 1504 2065 -3815 3 1368 198 103 0 0 chr5 102727851 102727880 -49809379 + (CCA)n Simple_repeat Simple_repeat 3 31 0 3 1368 7651 214 44 18 chr5 102727880 102729243 -49808016 + L1_Mur3 LINE L1 2066 3475 -2405 3 1368 953 209 68 36 chr5 102729302 102729609 -49807650 + Lx9 LINE L1 7328 7644 0 3 1368 405 309 49 35 chr5 102729613 102729901 -49807358 + Charlie1a DNA MER1_type 1164 1455 0 3 1368 792 221 0 0 chr5 102730239 102730384 -49806875 + B1_Mur4 SINE Alu 1 145 -5 3 1368 487 336 70 0 chr5 102731811 102731954 -49805305 - B4A SINE B4 -12 280 128 3 1368 1194 145 54 0 chr5 102732456 102732677 -49804582 - Lx2A1 LINE L1 0 7008 6776 3 1368 258 32 0 0 chr5 102733661 102733692 -49803567 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1368 206 136 23 0 chr5 102733709 102733753 -49803506 + (ATG)n Simple_repeat Simple_repeat 3 47 0 3 1368 486 301 180 11 chr5 102733954 102734132 -49803127 - ID_B1 SINE B4 -6 218 11 3 1368 195 203 0 0 chr5 102734540 102734614 -49802645 + (CAGA)n Simple_repeat Simple_repeat 3 76 0 3 1368 847 314 65 29 chr5 102734672 102735081 -49802178 + MLT2B4 LTR ERVL 63 494 -26 3 1368 349 357 58 72 chr5 102736251 102736487 -49800772 - B4A SINE B4 -59 233 3 3 1368 186 43 0 0 chr5 102737105 102737128 -49800131 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1368 265 308 15 0 chr5 102737617 102737682 -49799577 + ID SINE ID 11 76 -148 3 1368 509 249 104 20 chr5 102737749 102737950 -49799309 - L1M3 LINE L1 -2047 4093 3876 3 1368 773 238 195 29 chr5 102737943 102738419 -49798840 - Lx9 LINE L1 -6 7638 7084 4 1368 279 0 0 0 chr5 102738422 102738453 -49798806 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1368 2127 219 92 13 chr5 102738506 102738575 -49798684 + Lx9 LINE L1 6439 6511 -1133 4 1368 1107 0 0 0 chr5 102738575 102738698 -49798561 + (TTC)n Simple_repeat Simple_repeat 1 123 0 4 1368 2127 219 92 13 chr5 102738698 102739109 -49798150 + Lx9 LINE L1 6512 6945 -699 4 1368 7600 41 37 2 chr5 102739109 102740035 -49797224 + RLTR13A2 LTR ERVK 1 958 0 4 1368 2127 219 92 13 chr5 102740035 102740098 -49797161 + Lx9 LINE L1 6946 7025 -619 4 1368 510 17 0 0 chr5 102740501 102740560 -49796699 + (GA)n Simple_repeat Simple_repeat 1 59 0 4 1368 252 122 0 0 chr5 102740587 102740628 -49796631 + (GGGAA)n Simple_repeat Simple_repeat 1 41 0 4 1368 875 104 67 0 chr5 102740662 102740797 -49796462 - B2_Mm2 SINE B2 -50 145 2 4 1368 237 132 0 0 chr5 102741087 102741125 -49796134 + (TCC)n Simple_repeat Simple_repeat 2 39 0 4 1368 215 228 0 17 chr5 102741674 102741732 -49795527 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1368 273 289 0 0 chr5 102742207 102742290 -49794969 - Lx8 LINE L1 -827 6646 6564 4 1368 432 0 0 0 chr5 102743073 102743121 -49794138 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1368 3376 91 13 6 chr5 102743292 102743766 -49793493 - L1_Mus4 LINE L1 -2 6634 6158 4 1368 1501 241 38 2 chr5 102744199 102744560 -49792699 - MTD LTR MaLR 0 419 20 4 1368 310 291 104 29 chr5 102744571 102744812 -49792447 - L1M3 LINE L1 -691 5621 5364 4 1368 350 312 159 8 chr5 102745290 102745628 -49791631 - L1M3 LINE L1 -1765 4381 3987 4 1368 427 128 11 11 chr5 102746516 102746603 -49790656 + (TG)n Simple_repeat Simple_repeat 1 87 0 4 1368 373 149 15 15 chr5 102746721 102746789 -49790470 - MTEa LTR MaLR 0 379 312 4 1368 344 286 26 71 chr5 102746834 102746947 -49790312 - MTEa LTR MaLR -159 220 113 4 1368 1235 62 0 0 chr5 102746950 102747112 -49790147 - L1_Mm LINE L1 -361 5522 5361 4 1368 596 240 35 176 chr5 102747241 102747610 -49789649 - RLTR15 LTR ERVK -8 351 35 4 1368 235 274 14 0 chr5 102749757 102749830 -49787429 + L1M4c LINE L1 1203 1276 -5331 4 1368 372 304 156 16 chr5 102750060 102750491 -49786768 + L1M4c LINE L1 1533 2023 -4726 4 1368 6250 49 16 15 chr5 102750630 102751436 -49785823 + L1_Mus2 LINE L1 5760 6566 0 4 1368 311 114 0 0 chr5 102751452 102751496 -49785763 - B2_Mm2 SINE B2 -150 45 2 4 1368 277 292 126 56 chr5 102751607 102751821 -49785438 + MLT1J1 LTR MaLR 27 255 -189 4 1368 483 268 54 12 chr5 102752502 102752668 -49784591 + L1M3e LINE L1 68 240 -6790 4 1368 227 297 35 26 chr5 102752827 102752941 -49784318 + L1M3e LINE L1 1433 1547 -5483 4 1368 367 269 57 0 chr5 102752940 102753081 -49784178 + L1M3e LINE L1 3558 3706 -3394 4 1368 336 102 0 0 chr5 102753098 102753147 -49784112 + (TCC)n Simple_repeat Simple_repeat 3 51 0 4 1368 1115 92 33 44 chr5 102753147 102753328 -49783931 - B2_Mm2 SINE B2 -15 180 2 4 1368 253 178 66 40 chr5 102753341 102753417 -49783842 + L1M3e LINE L1 3718 3795 -3311 4 1368 387 60 0 0 chr5 102753428 102753478 -49783781 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1368 240 354 0 47 chr5 102753554 102753640 -49783619 + ID4 SINE ID 2 83 0 4 1368 562 223 104 28 chr5 102753649 102753861 -49783398 + L1MA9 LINE L1 2973 3200 -2943 4 1368 307 362 7 0 chr5 102753938 102754087 -49783172 + L1MA9 LINE L1 3195 3344 -2799 4 1368 329 296 14 19 chr5 102754439 102754614 -49782645 + L1MA9 LINE L1 5254 5428 -884 4 1368 183 80 0 0 chr5 102754944 102754969 -49782290 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1368 238 246 188 0 chr5 102755163 102755232 -49782027 + ID4_ SINE ID 2 83 0 4 1368 1061 251 58 115 chr5 102755242 102755845 -49781414 + L1MA9 LINE L1 5458 6086 -226 4 1368 222 105 0 0 chr5 102755880 102755918 -49781341 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1368 303 299 195 42 chr5 102756017 102756224 -49781035 + MLT1A0 LTR MaLR 2 243 -122 4 1368 1397 45 39 6 chr5 102756224 102756402 -49780857 - B2_Mm2 SINE B2 -9 186 3 4 1368 303 299 96 73 chr5 102756402 102756460 -49780799 + MLT1A0 LTR MaLR 244 301 -64 4 1368 630 50 30 0 chr5 102758060 102758161 -49779098 - L1Md_F2 LINE L1 -2 6580 6477 4 1368 462 227 61 20 chr5 102758447 102758546 -49778713 - B1_Mur1 SINE Alu -34 115 13 4 1368 306 263 8 99 chr5 102758546 102758570 -49778689 - MT2B LTR ERVL -329 246 154 4 1368 230 287 138 19 chr5 102758863 102759023 -49778236 - L1MEc LINE L1 -5908 492 314 4 21 13932 15 1 0 chr5 102759031 102760703 -49776556 + L1Md_A LINE L1 3914 5586 -297 4 1369 8563 24 0 1 chr5 102760703 102761724 -49775535 + L1Md_A LINE L1 5587 6582 0 4 1369 603 0 0 0 chr5 102764278 102764345 -49772914 + (CAAAC)n Simple_repeat Simple_repeat 3 69 0 4 1369 2156 94 65 0 chr5 102764358 102764665 -49772594 - ORR1A2 LTR MaLR 0 327 1 4 1369 206 121 0 0 chr5 102764968 102765001 -49772258 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 4 1369 306 299 10 40 chr5 102765002 102765103 -49772156 - PB1D10 SINE Alu -8 109 12 4 1369 348 294 72 38 chr5 102767442 102767727 -49769532 - L1M4 LINE L1 -504 5675 5374 4 1369 435 293 69 92 chr5 102767793 102768097 -49769162 - L1MC LINE L1 -851 5295 4999 4 1369 23 0 0 0 chr5 102768161 102768184 -49769075 + AT_rich Low_complexity Low_complexity 1 23 0 4 1369 283 281 6 12 chr5 102768197 102768363 -49768896 + (TATG)n Simple_repeat Simple_repeat 4 168 0 4 1369 358 364 0 0 chr5 102768373 102768502 -49768757 + (TG)n Simple_repeat Simple_repeat 1 129 0 4 1369 514 311 60 0 chr5 102768502 102768653 -49768606 - RSINE1 SINE B4 0 165 6 4 1369 275 326 21 0 chr5 102768694 102768789 -49768470 - L1M4 LINE L1 -1421 4725 4629 4 1369 359 0 0 42 chr5 102768793 102768804 -49768455 + (TTC)n Simple_repeat Simple_repeat 1 10 0 4 1369 1107 134 0 0 chr5 102768804 102768983 -49768276 + (TCC)n Simple_repeat Simple_repeat 2 180 0 4 1369 359 0 0 42 chr5 102768983 102769019 -49768240 + (TTC)n Simple_repeat Simple_repeat 1 36 0 4 1369 602 103 92 10 chr5 102769019 102769117 -49768142 - PB1D9 SINE Alu -14 106 1 4 1369 527 226 0 6 chr5 102769465 102769625 -49767634 + (TG)n Simple_repeat Simple_repeat 1 159 0 4 1369 489 224 0 0 chr5 102769788 102769913 -49767346 + (CATA)n Simple_repeat Simple_repeat 4 128 0 4 1369 918 179 153 0 chr5 102771211 102771407 -49765852 + URR1A DNA MER1_type 1 226 0 4 1369 22 0 0 0 chr5 102772951 102772973 -49764286 + AT_rich Low_complexity Low_complexity 1 22 0 4 1369 22 35 0 0 chr5 102773426 102773455 -49763804 + AT_rich Low_complexity Low_complexity 1 29 0 4 1369 395 363 43 27 chr5 102774794 102774978 -49762281 + MER117 DNA MER1_type 2 188 -9 4 1369 2107 138 90 14 chr5 102775366 102775732 -49761527 - ORR1B1 LTR MaLR 0 394 1 4 1369 236 250 52 13 chr5 102775959 102776036 -49761223 + (TATG)n Simple_repeat Simple_repeat 3 82 0 4 1369 22 0 0 0 chr5 102776108 102776130 -49761129 + AT_rich Low_complexity Low_complexity 1 22 0 4 1369 311 318 81 49 chr5 102776202 102776387 -49760872 - B4 SINE B4 -44 248 58 4 1369 197 0 71 0 chr5 102776654 102776682 -49760577 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1369 965 94 0 7 chr5 102776813 102776963 -49760296 - L1_Mus1 LINE L1 0 6567 6419 4 1369 863 57 24 8 chr5 102778698 102778823 -49758436 + B1_Mus1 SINE Alu 1 127 -21 4 1369 369 0 0 0 chr5 102778965 102779006 -49758253 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1369 863 57 24 8 chr5 102780173 102780298 -49756961 - B1_Mus1 SINE Alu -21 127 1 4 1369 228 86 0 0 chr5 102780429 102780464 -49756795 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1369 313 245 53 0 chr5 102781292 102781386 -49755873 + BC1_Mm scRNA scRNA 6 104 -48 4 1369 29 0 0 0 chr5 102781569 102781598 -49755661 + AT_rich Low_complexity Low_complexity 1 29 0 4 1369 456 302 27 61 chr5 102781716 102781864 -49755395 - RSINE1 SINE B4 -20 145 3 4 1369 372 304 158 28 chr5 102782447 102782701 -49754558 - B4 SINE B4 0 292 6 4 1369 246 136 0 0 chr5 102783202 102783246 -49754013 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1369 377 312 8 8 chr5 102784418 102784547 -49752712 - L3 LINE CR1 -196 4293 4165 4 1369 590 276 19 90 chr5 102784802 102785013 -49752246 - Lx8 LINE L1 -1065 6408 6213 4 1369 22 70 0 0 chr5 102787090 102787133 -49750126 + AT_rich Low_complexity Low_complexity 1 43 0 4 1369 25 0 0 0 chr5 102788224 102788249 -49749010 + AT_rich Low_complexity Low_complexity 1 25 0 4 1369 1287 151 23 5 chr5 102788305 102788525 -49748734 + URR1B DNA MER1_type 2 225 0 4 1369 700 117 0 23 chr5 102788585 102788716 -49748543 + Lx LINE L1 6527 6654 0 4 1369 2315 93 3 55 chr5 102789133 102789476 -49747783 + ORR1A2 LTR MaLR 1 325 -2 4 1369 470 295 133 46 chr5 102789556 102789972 -49747287 - L1ME2z LINE L1 -541 5903 5429 4 1369 2045 129 123 0 chr5 102791403 102791744 -49745515 + ORR1C2 LTR MaLR 2 384 0 4 1369 1308 207 80 31 chr5 102791765 102792114 -49745145 + ORR1D2 LTR MaLR 5 370 0 4 1369 929 310 86 33 chr5 102792155 102792738 -49744521 - L1MA4A LINE L1 -341 5962 5349 4 1369 391 338 25 6 chr5 102794792 102794950 -49742309 + (CA)n Simple_repeat Simple_repeat 1 161 0 4 1369 207 156 0 0 chr5 102796194 102796226 -49741033 + (CAG)n Simple_repeat Simple_repeat 2 33 0 4 1369 729 152 0 0 chr5 102796453 102796739 -49740520 + (TA)n Simple_repeat Simple_repeat 1 286 0 4 1369 1221 205 290 10 chr5 102796942 102797356 -49739903 + RMER15 LTR ERVL 27 556 -19 4 1369 267 274 78 63 chr5 102797624 102797775 -49739484 - MIR SINE MIR -52 216 60 4 1369 3213 67 5 2 chr5 102798915 102799319 -49737940 + MTB_Mm LTR MaLR 1 405 -2 4 1369 385 276 122 0 chr5 102799387 102799568 -49737691 - B3 SINE B2 -13 203 1 4 1369 26 0 0 0 chr5 102800378 102800404 -49736855 + AT_rich Low_complexity Low_complexity 1 26 0 4 1369 3088 85 48 5 chr5 102800411 102800823 -49736436 - RLTR23 LTR ERV1 0 430 1 4 1369 464 270 102 18 chr5 102800841 102801007 -49736252 - B3A SINE B2 -18 180 1 4 1369 363 296 57 58 chr5 102801753 102802168 -49735091 + L1MA4 LINE L1 5503 5903 -397 4 1369 189 74 0 0 chr5 102802176 102802203 -49735056 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1369 269 269 0 15 chr5 102802861 102802929 -49734330 - MLT1J LTR MaLR -344 168 102 4 1369 257 176 26 117 chr5 102802862 102802939 -49734320 - LTR33B LTR ERVL -359 144 75 4 1369 291 122 0 0 chr5 102803913 102803962 -49733297 + (GGA)n Simple_repeat Simple_repeat 2 50 0 4 1369 307 347 44 35 chr5 102805185 102805305 -49731954 + MER20 DNA MER1_type 9 133 -86 5 1369 1404 214 136 78 chr5 102805305 102805857 -49731402 + RLTR31A_Mm LTR ERVK 1 584 0 5 1369 307 347 44 35 chr5 102805857 102805939 -49731320 + MER20 DNA MER1_type 134 213 -6 5 1369 285 29 0 0 chr5 102806380 102806414 -49730845 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5 1369 293 298 0 92 chr5 102806802 102806998 -49730261 + GA-rich Low_complexity Low_complexity 2 179 0 5 1369 287 263 39 13 chr5 102807164 102807241 -49730018 - ORR1E LTR MaLR -280 79 1 5 1369 222 118 0 0 chr5 102808044 102808078 -49729181 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 5 1369 3283 58 2 0 chr5 102809448 102809847 -49727412 - MTB LTR MaLR 0 400 1 5 1369 1153 296 33 17 chr5 102809856 102810217 -49727042 + ORR1D2 LTR MaLR 4 370 0 5 1369 235 291 195 26 chr5 102810247 102810360 -49726899 + Charlie1 DNA MER1_type 1 132 -2649 5 1369 779 328 34 20 chr5 102810559 102810969 -49726290 - RMER1C Other Other -541 801 375 5 1369 1234 143 25 33 chr5 102810983 102811228 -49726031 - RMER6B LTR ERVK -81 380 138 5 1369 41441 14 2 6 chr5 102811228 102817620 -49719639 - L1Md_A LINE L1 -7 6575 215 5 1369 804 115 86 0 chr5 102817621 102817760 -49719499 - RMER6B LTR ERVK -310 151 1 5 1369 601 312 9 77 chr5 102817760 102818020 -49719239 - RMER1C Other Other -533 809 417 5 1369 364 290 10 0 chr5 102818234 102818334 -49718925 - RMER1B Other Other -926 140 40 5 1369 396 163 23 0 chr5 102818512 102818598 -49718661 - L1Md_F3 LINE L1 -1 6583 6496 5 1369 681 302 72 38 chr5 102818768 102819060 -49718199 - MTE-int LTR MaLR -460 1120 819 5 1369 301 302 112 15 chr5 102819066 102819271 -49717988 + MLT1C LTR MaLR 86 310 -157 5 1369 182 305 52 10 chr5 102819367 102819463 -49717796 + MIR SINE MIR 136 235 -27 5 1369 378 57 0 0 chr5 102820785 102820838 -49716421 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 5 1369 330 26 0 0 chr5 102820838 102820877 -49716382 + (TCC)n Simple_repeat Simple_repeat 2 40 0 5 1369 2835 116 5 15 chr5 102821226 102821637 -49715622 + MTB_Mm LTR MaLR 1 407 0 5 1369 526 191 36 9 chr5 102821756 102821867 -49715392 + ID_B1 SINE B4 109 222 -2 5 1369 602 324 85 12 chr5 102822099 102822418 -49714841 + MLT1B LTR MaLR 49 390 0 5 1369 500 291 48 0 chr5 102822570 102822735 -49714524 + B3 SINE B2 2 174 -42 5 1369 2771 269 96 45 chr5 102822859 102823865 -49713394 - Lx9 LINE L1 -52 7592 6536 5 1369 1079 190 39 0 chr5 102825780 102825985 -49711274 - B3 SINE B2 -3 213 1 5 1369 1828 201 91 5 chr5 102826250 102826636 -49710623 - MTD LTR MaLR 0 419 1 5 1369 210 238 0 0 chr5 102827027 102827052 -49710207 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1369 204 40 0 0 chr5 102827052 102827077 -49710182 + (TC)n Simple_repeat Simple_repeat 2 26 0 5 1369 210 238 0 0 chr5 102827077 102827135 -49710124 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1369 554 211 0 6 chr5 102827146 102827327 -49709932 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1369 516 299 10 31 chr5 102827328 102827521 -49709738 - B3A SINE B2 -9 189 1 5 1369 272 295 0 0 chr5 102828227 102828305 -49708954 + PB1D10 SINE Alu 1 78 -39 5 1369 405 0 0 0 chr5 102828475 102828520 -49708739 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1369 378 0 0 0 chr5 102828520 102828561 -49708698 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1369 41 87 0 0 chr5 102828660 102828764 -49708495 + AT_rich Low_complexity Low_complexity 1 104 0 5 1369 445 221 0 0 chr5 102828818 102828904 -49708355 + B3 SINE B2 3 88 -128 5 1369 234 323 21 0 chr5 102829110 102829206 -49708053 - MLT1C LTR MaLR 0 467 370 5 1369 606 281 72 5 chr5 102829322 102829515 -49707744 + ID_B1 SINE B4 2 207 -17 5 1369 4207 83 21 39 chr5 102830391 102831003 -49706256 - MT2B LTR ERVL 0 601 1 5 1369 754 287 16 0 chr5 102832865 102833053 -49704206 + B3A SINE B2 6 196 -2 5 1369 692 195 268 0 chr5 102833056 102833220 -49704039 + B3 SINE B2 1 208 -8 5 1369 232 313 0 0 chr5 102833784 102833851 -49703408 - MER112 DNA MER1_type 0 261 195 5 1369 556 271 147 110 chr5 102835019 102835338 -49701921 + MLT1A1 LTR MaLR 75 405 -3 5 1369 356 336 19 18 chr5 102835480 102835663 -49701596 + MIR SINE MIR 68 246 -22 5 1369 245 307 88 111 chr5 102836535 102836671 -49700588 - ORR1D1 LTR MaLR -53 306 183 5 1369 468 0 0 0 chr5 102836671 102836723 -49700536 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1369 245 307 88 111 chr5 102836723 102836802 -49700457 - ORR1D1 LTR MaLR -177 182 96 5 1369 288 188 31 15 chr5 102836873 102836938 -49700321 - ORR1D1 LTR MaLR -308 66 1 5 1369 36169 35 1 1 chr5 102837822 102844098 -49693161 + L1Md_T LINE L1 1 5589 -297 5 1369 9194 4 0 0 chr5 102844098 102845094 -49692165 + L1Md_T LINE L1 5590 6585 0 5 1369 477 0 0 0 chr5 102845194 102845247 -49692012 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1369 459 0 0 0 chr5 102847563 102847614 -49689645 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1369 852 225 60 56 chr5 102847776 102848026 -49689233 + B4A SINE B4 28 278 -14 5 1369 278 87 0 21 chr5 102848052 102848099 -49689160 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1369 207 0 0 0 chr5 102849188 102849211 -49688048 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 5 1369 1415 125 28 0 chr5 102849680 102849896 -49687363 + URR1A DNA MER1_type 5 226 0 5 1369 312 339 8 25 chr5 102850078 102850199 -49687060 - MTE2a LTR MaLR -204 175 57 5 1369 1196 74 0 0 chr5 102850352 102850515 -49686744 + B2_Mm2 SINE B2 1 163 -32 5 1369 1107 214 140 30 chr5 102851546 102851874 -49685385 - ORR1D1 LTR MaLR 0 374 11 5 1369 295 321 26 35 chr5 102852036 102852152 -49685107 + PB1D9 SINE Alu 6 120 0 5 1369 1008 294 95 29 chr5 102852194 102852709 -49684550 - L1MC2 LINE L1 -52 6292 5744 5 1369 670 289 78 175 chr5 102853376 102853553 -49683706 - MTE-int LTR MaLR -34 1546 1357 5 1369 216 0 0 0 chr5 102853553 102853577 -49683682 + (CAA)n Simple_repeat Simple_repeat 1 24 0 5 1369 670 289 78 175 chr5 102853577 102854040 -49683219 - MTE-int LTR MaLR -224 1356 969 5 1369 240 320 0 0 chr5 102854061 102854136 -49683123 - ID4 SINE ID -5 78 4 5 1369 1096 73 0 0 chr5 102854692 102854828 -49682431 + B1_Mm SINE Alu 2 137 -10 5 1369 260 27 27 0 chr5 102854828 102854865 -49682394 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 5 1369 24 24 0 24 chr5 102854908 102854930 -49682329 + AT_rich Low_complexity Low_complexity 1 22 0 5 1369 222 37 0 0 chr5 102854930 102854957 -49682302 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1369 24 24 0 24 chr5 102854957 102854976 -49682283 + AT_rich Low_complexity Low_complexity 1 19 0 5 1369 1003 115 24 6 chr5 102854976 102855142 -49682117 - B2_Mm2 SINE B2 -24 171 3 5 1369 216 0 0 0 chr5 102855599 102855623 -49681636 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1369 24 67 0 0 chr5 102855912 102855957 -49681302 + AT_rich Low_complexity Low_complexity 1 45 0 5 1369 288 130 0 0 chr5 102857036 102857082 -49680177 + (ATG)n Simple_repeat Simple_repeat 1 46 0 5 1369 332 326 69 58 chr5 102858149 102858338 -49678921 - ORR1D2 LTR MaLR -172 198 8 5 1369 259 347 11 23 chr5 102858597 102858847 -49678412 + (TATG)n Simple_repeat Simple_repeat 1 247 0 5 1369 213 286 0 0 chr5 102858919 102859038 -49678221 + (TATG)n Simple_repeat Simple_repeat 1 119 0 5 1369 427 270 5 58 chr5 102859044 102859270 -49677989 + (TATATG)n Simple_repeat Simple_repeat 1 214 0 5 1369 280 229 0 32 chr5 102859315 102859441 -49677818 + (TATG)n Simple_repeat Simple_repeat 2 123 0 5 1369 355 336 0 0 chr5 102859475 102859615 -49677644 + (TATG)n Simple_repeat Simple_repeat 3 142 0 5 1369 696 234 0 0 chr5 102859798 102859935 -49677324 - B1_Mur2 SINE Alu -8 141 5 5 1369 238 308 13 0 chr5 102860967 102861045 -49676214 + PB1 SINE Alu 22 100 -27 5 1369 229 245 0 0 chr5 102861063 102861112 -49676147 + GA-rich Low_complexity Low_complexity 3 51 0 5 1369 571 60 24 0 chr5 102861625 102861709 -49675550 + (TC)n Simple_repeat Simple_repeat 2 87 0 5 1369 283 234 23 23 chr5 102861751 102861882 -49675377 + CT-rich Low_complexity Low_complexity 2 132 0 5 1369 299 25 25 0 chr5 102862154 102862194 -49675065 + (CATA)n Simple_repeat Simple_repeat 3 43 0 5 1369 395 333 110 83 chr5 102862664 102863156 -49674103 - MLT1D LTR MaLR 0 505 1 5 1369 570 317 107 26 chr5 102863250 102863707 -49673552 + L1ME2z LINE L1 5627 6120 -324 5 1369 351 185 0 0 chr5 102864007 102864099 -49673160 + (CA)n Simple_repeat Simple_repeat 2 93 0 5 1369 228 275 96 36 chr5 102864110 102864193 -49673066 + ID_B1 SINE B4 68 155 -69 5 1369 1854 222 38 0 chr5 102865235 102865631 -49671628 + Lx9 LINE L1 6516 6926 -718 5 1369 181 351 34 87 chr5 102865785 102865991 -49671268 + L2 LINE L2 2824 3018 -401 5 1369 302 263 40 10 chr5 102869026 102869126 -49668133 - Tigger5 DNA MER2_type -4 2402 2300 5 1369 381 308 78 39 chr5 102869155 102869334 -49667925 - Tigger5 DNA MER2_type -2182 224 39 5 1369 554 246 53 0 chr5 102869635 102869806 -49667453 - Lx9 LINE L1 -7 7637 7458 5 1369 213 94 0 0 chr5 102869814 102869846 -49667413 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1369 42196 4 0 0 chr5 102869856 102876015 -49661244 - L1Md_A LINE L1 0 6582 423 5 1369 1232 251 59 12 chr5 102876017 102876355 -49660904 - Lx9 LINE L1 -157 7487 7134 5 1369 202 61 61 0 chr5 102876362 102876395 -49660864 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1369 928 16 0 24 chr5 102876398 102876523 -49660736 - B1_Mus2 SINE Alu 0 147 26 5 1369 1856 193 159 25 chr5 102876529 102877008 -49660251 - Lx9 LINE L1 -493 7151 6609 5 1369 726 234 237 43 chr5 102877014 102877452 -49659807 + Lx9 LINE L1 6105 6627 -1017 5 1369 180 0 0 0 chr5 102877484 102877504 -49659755 + (TTCC)n Simple_repeat Simple_repeat 4 23 0 5 1369 254 307 0 0 chr5 102878156 102878244 -49659015 - Lx8 LINE L1 -592 6881 6794 5 1369 969 275 91 0 chr5 102878916 102879214 -49658045 - Lx8 LINE L1 -313 7160 6836 5 1369 256 338 28 41 chr5 102879213 102879358 -49657901 + Lx8 LINE L1 5795 5937 -1536 5 1369 1304 150 22 26 chr5 102879606 102879832 -49657427 - URR1B DNA MER1_type 0 225 1 5 1369 334 259 212 26 chr5 102879843 102879994 -49657265 + Lx8 LINE L1 6091 6269 -1204 5 1369 357 360 0 8 chr5 102880001 102880127 -49657132 - B1F SINE Alu -7 142 18 5 1369 522 46 0 0 chr5 102881844 102881909 -49655350 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1369 2290 102 6 50 chr5 102882318 102882660 -49654599 - ORR1A2 LTR MaLR 0 327 1 5 1369 271 211 103 21 chr5 102883258 102883355 -49653904 - LTR16A1 LTR ERVL -151 305 201 6 1369 225 159 0 0 chr5 102884826 102884870 -49652389 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1369 351 296 23 23 chr5 102885389 102885517 -49651742 + MIRb SINE MIR 91 218 -50 6 1369 30 0 0 0 chr5 102887836 102887866 -49649393 + AT_rich Low_complexity Low_complexity 1 30 0 6 1369 589 323 0 6 chr5 102887884 102888049 -49649210 - RSINE1 SINE B4 0 165 2 6 1369 2029 167 39 3 chr5 102888173 102888534 -49648725 - ORR1D1 LTR MaLR 0 374 1 6 171 1364 290 56 34 chr5 102891077 102891609 -49645650 + MER44B DNA MER2_type 7 550 0 6 1370 516 32 0 0 chr5 102892757 102892819 -49644440 + (TG)n Simple_repeat Simple_repeat 2 63 0 6 1370 265 305 0 12 chr5 102893932 102894015 -49643244 - MTEb LTR MaLR -11 368 287 6 1370 241 280 32 33 chr5 102894273 102894399 -49642860 - MTEb LTR MaLR -284 124 1 6 1370 8167 30 22 2 chr5 102894798 102895765 -49641494 - L1Md_F2 LINE L1 -8 6574 5589 6 1370 300 158 0 0 chr5 102897336 102897393 -49639866 + CT-rich Low_complexity Low_complexity 2 58 0 6 1370 1242 251 28 85 chr5 102897927 102898327 -49638932 + MTE2a LTR MaLR 1 377 -2 6 1370 1163 64 0 0 chr5 102900863 102901003 -49636256 + B1_Mus1 SINE Alu 1 140 -8 6 1370 234 0 0 0 chr5 102901208 102901234 -49636025 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1370 1010 226 19 14 chr5 102901291 102901506 -49635753 - B3 SINE B2 0 216 1 6 1370 4332 130 87 3 chr5 102901910 102902590 -49634669 - RMER19A LTR ERVK 0 737 1 6 1370 28 71 0 0 chr5 102903012 102903068 -49634191 + AT_rich Low_complexity Low_complexity 1 56 0 6 1370 22 56 0 0 chr5 102904145 102904181 -49633078 + AT_rich Low_complexity Low_complexity 1 36 0 6 1370 183 80 0 0 chr5 102904726 102904751 -49632508 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1370 235 220 20 0 chr5 102905312 102905362 -49631897 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1370 224 333 0 0 chr5 102905547 102905616 -49631643 + (TG)n Simple_repeat Simple_repeat 2 70 0 6 1370 351 0 0 0 chr5 102905814 102905853 -49631406 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 6 1370 547 275 44 45 chr5 102905894 102906099 -49631160 - B3A SINE B2 -11 205 2 6 1370 405 0 0 0 chr5 102906134 102906179 -49631080 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 6 1370 1024 111 0 0 chr5 102906180 102906333 -49630926 - B2_Mm2 SINE B2 -41 154 2 6 1370 312 68 33 33 chr5 102907502 102907563 -49629696 + (TCCCC)n Simple_repeat Simple_repeat 3 63 0 6 1370 341 159 95 24 chr5 102907694 102907778 -49629481 + RMER10A LTR ERVL 322 411 -31 6 1370 207 0 0 0 chr5 102907849 102907872 -49629387 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1370 345 47 0 0 chr5 102911024 102911067 -49626192 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1370 218 57 57 0 chr5 102912676 102912711 -49624548 + (CGGGGG)n Simple_repeat Simple_repeat 5 41 0 6 1370 270 0 0 0 chr5 102913250 102913280 -49623979 + (GA)n Simple_repeat Simple_repeat 1 30 0 6 1370 495 0 0 0 chr5 102913329 102913384 -49623875 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1370 588 181 38 38 chr5 102913747 102913879 -49623380 - B1_Mur4 SINE Alu -13 137 6 6 1370 1104 65 0 0 chr5 102914042 102914196 -49623063 + (CA)n Simple_repeat Simple_repeat 1 154 0 6 1370 313 277 69 0 chr5 102914213 102914314 -49622945 - PB1D10 SINE Alu 0 117 10 6 1370 257 308 33 25 chr5 102914987 102915107 -49622152 + MamRep1161 DNA TcMar 60 180 -777 6 1370 213 412 70 6 chr5 102915533 102915704 -49621555 + L4 LINE RTE 1077 1258 -771 6 1370 188 342 68 26 chr5 102915874 102915991 -49621268 + L4 LINE RTE 1463 1584 -445 6 1370 2450 151 78 60 chr5 102916889 102917440 -49619819 + RLTR31_Mm LTR ERVK 1 561 0 6 1370 2436 101 0 0 chr5 102917471 102917797 -49619462 - ORR1A3 LTR MaLR 0 326 1 6 1370 250 341 0 0 chr5 102918516 102918601 -49618658 - MIRc SINE MIR -127 141 57 6 1370 492 265 106 24 chr5 102918957 102919127 -49618132 - B3 SINE B2 -32 184 1 6 1370 696 292 81 20 chr5 102919387 102919635 -49617624 - B4A SINE B4 -25 267 5 6 1370 369 259 264 0 chr5 102919932 102920106 -49617153 + ID_B1 SINE B4 1 220 -4 6 1370 273 190 0 0 chr5 102920178 102920227 -49617032 + GA-rich Low_complexity Low_complexity 2 50 0 6 1370 1502 11 0 6 chr5 102920227 102920404 -49616855 + (GAA)n Simple_repeat Simple_repeat 3 178 0 6 1370 909 52 0 0 chr5 102920420 102920535 -49616724 + (GAA)n Simple_repeat Simple_repeat 3 117 0 6 1370 1116 94 0 0 chr5 102921707 102921866 -49615393 + (TCCC)n Simple_repeat Simple_repeat 2 160 0 6 1370 804 30 0 0 chr5 102922778 102922877 -49614382 + (TCCC)n Simple_repeat Simple_repeat 3 101 0 6 1370 269 235 132 0 chr5 102922924 102922992 -49614267 - ID4_ SINE ID -3 80 4 6 1370 198 0 0 0 chr5 102923030 102923052 -49614207 + (TC)n Simple_repeat Simple_repeat 2 23 0 6 1370 261 57 0 0 chr5 102923052 102923086 -49614173 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1370 400 295 62 0 chr5 102923086 102923198 -49614061 - B3A SINE B2 -30 168 50 6 1370 687 84 0 0 chr5 102926605 102926700 -49610559 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 6 1370 290 26 0 25 chr5 102927063 102927103 -49610156 + (TTAA)n Simple_repeat Simple_repeat 3 41 0 6 1370 872 186 0 6 chr5 102927117 102927274 -49609985 - B3 SINE B2 -60 156 1 6 1370 330 319 71 33 chr5 102927407 102927647 -49609612 - L1MC4a LINE L1 -127 7755 7507 6 1370 330 26 0 0 chr5 102928072 102928111 -49609148 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1370 546 250 81 14 chr5 102928474 102928685 -49608574 - L1MC4a LINE L1 -907 6975 6751 6 1370 706 219 6 70 chr5 102928685 102928857 -49608402 + RSINE1 SINE B4 3 163 -2 6 1370 180 234 0 0 chr5 102928858 102928905 -49608354 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 6 1370 781 162 6 6 chr5 102930540 102930714 -49606545 + (TG)n Simple_repeat Simple_repeat 1 174 0 6 1370 213 60 56 78 chr5 102930744 102930834 -49606425 + (GTGTG)n Simple_repeat Simple_repeat 2 89 0 6 1370 473 164 46 23 chr5 102930836 102931011 -49606248 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1370 255 177 67 6 chr5 102931033 102931198 -49606061 + (TG)n Simple_repeat Simple_repeat 2 176 0 6 1370 376 206 27 0 chr5 102931220 102931293 -49605966 - ID4_ SINE ID -6 77 3 6 1370 212 152 0 42 chr5 102933982 102934030 -49603229 + (CTTA)n Simple_repeat Simple_repeat 3 48 0 6 1370 725 279 65 17 chr5 102934536 102934766 -49602493 - RMER15 LTR ERVL -59 516 276 6 1370 1210 257 94 11 chr5 102934973 102935347 -49601912 + MTD LTR MaLR 1 405 -14 6 1370 279 245 126 45 chr5 102935661 102935772 -49601487 - Tigger5 DNA MER2_type 0 2406 2287 6 1370 268 363 99 0 chr5 102935769 102935940 -49601319 - Tigger5 DNA MER2_type -2182 224 37 6 1370 226 295 70 93 chr5 102935941 102936027 -49601232 - PB1D7 SINE Alu -8 112 29 6 1370 1511 40 0 0 chr5 102936139 102936312 -49600947 - B2_Mm1a SINE B2 -19 174 2 6 1370 987 52 15 0 chr5 102936343 102936478 -49600781 - B1_Mus2 SINE Alu -2 145 9 6 1370 189 0 0 0 chr5 102936793 102936814 -49600445 + (TG)n Simple_repeat Simple_repeat 1 21 0 6 1370 263 287 40 50 chr5 102936861 102936960 -49600299 - PB1D10 SINE Alu -7 110 13 6 1370 547 294 0 0 chr5 102936914 102937050 -49600209 - B4A SINE B4 -149 143 8 6 1370 230 323 16 8 chr5 102938047 102938172 -49599087 + CT-rich Low_complexity Low_complexity 2 127 0 6 1370 561 88 0 0 chr5 102938190 102938270 -49598989 + (TCCC)n Simple_repeat Simple_repeat 2 81 0 6 1370 572 301 48 16 chr5 102938469 102938655 -49598604 - B4 SINE B4 -18 274 83 6 1370 705 330 106 27 chr5 102939198 102939612 -49597647 - MLT1C LTR MaLR 0 467 21 6 1370 311 313 151 21 chr5 102939663 102939849 -49597410 + MIR SINE MIR 45 254 -8 6 1370 244 169 14 40 chr5 102939877 102939951 -49597308 + T-rich Low_complexity Low_complexity 5 76 0 6 1370 411 282 0 30 chr5 102940149 102940284 -49596975 + RMER15 LTR ERVL 433 563 -12 6 1370 4426 70 32 2 chr5 102941697 102942267 -49594992 - L1_Mus1 LINE L1 0 6567 5981 6 1370 329 86 17 0 chr5 102942367 102942425 -49594834 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1370 1163 233 29 7 chr5 102942439 102942716 -49594543 + MTD LTR MaLR 137 419 0 6 1370 363 44 0 0 chr5 102943930 102943975 -49593284 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1370 304 360 82 17 chr5 102943991 102944285 -49592974 - L1MC4a LINE L1 -1958 5924 5612 6 1370 245 324 27 0 chr5 102944993 102945104 -49592155 + Tigger15a DNA TcMar 205 318 -397 6 1370 774 214 34 23 chr5 102948175 102948352 -49588907 + ORR1C2 LTR MaLR 1 179 -195 6 1370 1751 119 105 63 chr5 102948379 102948711 -49588548 - ORR1B1 LTR MaLR -8 386 41 6 1370 775 231 70 16 chr5 102948710 102948895 -49588364 + ORR1C2 LTR MaLR 186 380 -4 6 1370 197 224 157 39 chr5 102949544 102949595 -49587664 - MIRb SINE MIR -183 85 29 6 1370 248 83 0 0 chr5 102950358 102950394 -49586865 - B2_Mm1t SINE B2 -91 102 67 6 1370 266 29 0 0 chr5 102950362 102950396 -49586863 - B2_Mm2 SINE B2 -98 97 64 6 1370 1349 107 23 0 chr5 102950454 102950631 -49586628 - B2_Mm2 SINE B2 -13 182 2 6 1370 4587 128 22 33 chr5 102951941 102952669 -49584590 - Lx2 LINE L1 -1 6996 6277 6 1370 337 313 45 8 chr5 102952676 102952808 -49584451 - B1F1 SINE Alu -2 147 11 6 1370 241 262 43 106 chr5 102952725 102952819 -49584440 - MT2B LTR ERVL -350 251 164 6 1370 262 331 57 14 chr5 102952975 102953116 -49584143 - MIRb SINE MIR -78 190 44 6 1370 5416 46 93 0 chr5 102953167 102953988 -49583271 - L1_Mm LINE L1 -369 5517 4410 6 1370 286 196 36 0 chr5 102954408 102954464 -49582795 - RSINE1 SINE B4 -105 60 3 6 1370 1986 161 133 28 chr5 102955645 102956067 -49581192 + Lx4A LINE L1 6593 7058 0 6 1370 1152 103 0 6 chr5 102956684 102956850 -49580409 - B2_Mm2 SINE B2 -18 177 13 6 1370 3652 32 0 2 chr5 102957443 102957844 -49579415 - MTB LTR MaLR 0 400 1 6 1370 3313 56 10 0 chr5 102958935 102959327 -49577932 - MTA_Mm LTR MaLR 0 396 1 6 1370 8378 70 9 68 chr5 102959327 102960495 -49576764 - MTA_Mm-int LTR MaLR 0 1098 1 6 1370 1273 62 0 0 chr5 102960569 102960715 -49576544 + B1_Mus2 SINE Alu 2 147 0 7 1370 269 358 54 76 chr5 102960952 102961176 -49576083 - MER20 DNA MER1_type 0 219 1 7 1370 780 91 0 0 chr5 102961269 102961379 -49575880 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 7 1370 387 214 42 8 chr5 102961548 102961666 -49575593 + HAL1-2a_MD LINE L1 2340 2461 -563 7 1370 213 200 0 98 chr5 102963402 102963524 -49573735 + A-rich Low_complexity Low_complexity 3 112 0 7 1370 241 156 99 11 chr5 102963421 102963512 -49573747 + (CAAAC)n Simple_repeat Simple_repeat 2 100 0 7 1370 257 75 0 24 chr5 102964209 102964250 -49573009 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 7 1370 1095 58 0 19 chr5 102964250 102964409 -49572850 + (GAA)n Simple_repeat Simple_repeat 1 156 0 7 1370 375 270 44 26 chr5 102965417 102965531 -49571728 - PB1D10 SINE Alu -1 116 1 7 1370 797 68 55 12 chr5 102966025 102966190 -49571069 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 7 1370 790 94 47 0 chr5 102966224 102966394 -49570865 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 7 1370 252 0 0 0 chr5 102967474 102967502 -49569757 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1370 261 262 35 23 chr5 102967510 102967596 -49569663 - MTEa LTR MaLR -14 365 279 7 1370 680 313 94 0 chr5 102969374 102969649 -49567610 - MER2 DNA MER2_type -38 307 7 7 1370 360 0 0 0 chr5 102971326 102971366 -49565893 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1370 319 274 47 31 chr5 102972125 102972335 -49564924 - L1M3 LINE L1 -678 5486 5270 7 1370 240 59 0 0 chr5 102975252 102975286 -49561973 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 7 1370 965 197 47 51 chr5 102975286 102975500 -49561759 - B3 SINE B2 -3 213 1 7 1370 191 309 0 68 chr5 102975587 102975660 -49561599 - L2b LINE L2 -18 3357 3290 7 1370 958 135 0 11 chr5 102976488 102976668 -49560591 + (GGA)n Simple_repeat Simple_repeat 2 179 0 7 1370 301 293 137 43 chr5 102976673 102976812 -49560447 + HAL1-3A_ME LINE L1 2284 2435 -423 7 1370 210 194 14 27 chr5 102976812 102976886 -49560373 + GA-rich Low_complexity Low_complexity 3 75 0 7 1370 342 381 41 16 chr5 102976935 102977178 -49560081 - L2b LINE L2 -481 2938 2690 7 1370 187 113 27 40 chr5 102977712 102977786 -49559473 + A-rich Low_complexity Low_complexity 4 76 0 7 1370 372 22 0 0 chr5 102977797 102977842 -49559417 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1370 468 0 0 0 chr5 102979200 102979252 -49558007 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1370 278 165 57 57 chr5 102979791 102979913 -49557346 + (TATAA)n Simple_repeat Simple_repeat 2 123 0 7 1370 217 104 0 77 chr5 102980733 102980785 -49556474 + CT-rich Low_complexity Low_complexity 2 49 0 7 1370 581 230 7 19 chr5 102980815 102981085 -49556174 + CT-rich Low_complexity Low_complexity 1 267 0 7 1370 293 47 0 23 chr5 102982198 102982242 -49555017 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 7 1370 214 315 13 52 chr5 102982442 102982459 -49554800 - B4 SINE B4 -214 78 6 7 1370 352 203 0 0 chr5 102982459 102982518 -49554741 - BC1_Mm scRNA scRNA -88 64 6 7 1370 351 113 0 0 chr5 102982547 102982600 -49554659 + (TCC)n Simple_repeat Simple_repeat 2 54 0 7 1370 186 167 0 0 chr5 102982615 102982651 -49554608 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1370 461 325 10 21 chr5 102982657 102982813 -49554446 - ID_B1 SINE B4 -9 215 64 7 1370 308 345 102 25 chr5 102983143 102983339 -49553920 - ORR1E LTR MaLR -122 237 27 7 1370 326 341 71 0 chr5 102983366 102983492 -49553767 - ID_B1 SINE B4 -9 215 81 7 1370 583 251 181 39 chr5 102984611 102984793 -49552466 + B3 SINE B2 8 215 -1 7 1370 351 0 0 0 chr5 102986057 102986096 -49551163 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1370 386 300 29 70 chr5 102986313 102986485 -49550774 - ORR1D2 LTR MaLR -5 365 201 7 1370 268 189 27 0 chr5 102986691 102986765 -49550494 + (CCA)n Simple_repeat Simple_repeat 1 76 0 7 1370 424 229 151 53 chr5 102987673 102987927 -49549332 - L1MB5 LINE L1 -312 5862 5576 7 1370 377 39 20 0 chr5 102988075 102988126 -49549133 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1370 317 324 15 0 chr5 102988152 102988288 -49548971 + (TG)n Simple_repeat Simple_repeat 2 139 0 7 1370 257 183 0 16 chr5 102988335 102988396 -49548863 + G-rich Low_complexity Low_complexity 6 65 0 7 1370 330 181 191 79 chr5 102992850 102992865 -49544394 + ID_B1 SINE B4 78 217 -7 7 1370 367 248 216 18 chr5 102992865 102992976 -49544283 + B1_Mur2 SINE Alu 10 142 -7 7 1370 273 89 0 0 chr5 102992976 102993021 -49544238 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 7 1370 435 19 0 0 chr5 102994028 102994080 -49543179 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1370 588 200 0 0 chr5 102995228 102995373 -49541886 + (TG)n Simple_repeat Simple_repeat 1 145 0 7 1370 516 296 99 74 chr5 102995373 102995657 -49541602 - B4A SINE B4 0 292 2 7 1370 248 269 30 0 chr5 102996455 102996522 -49540737 + CT-rich Low_complexity Low_complexity 1 69 0 7 1370 580 207 14 14 chr5 102996756 102996903 -49540356 + Lx2B LINE L1 6852 6998 -2 7 1370 245 256 47 35 chr5 102997105 102997190 -49540069 - PB1D10 SINE Alu 0 117 32 7 1370 256 136 17 0 chr5 102997305 102997364 -49539895 + Lx3A LINE L1 6906 6965 -16 7 1370 333 0 0 0 chr5 102997364 102997401 -49539858 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 7 1370 421 311 24 36 chr5 102998459 102998626 -49538633 - B4A SINE B4 -126 166 2 7 1370 664 241 27 54 chr5 102999315 102999464 -49537795 + B1_Mur2 SINE Alu 2 146 -3 7 1370 481 62 0 36 chr5 102999464 102999548 -49537711 + (TAAA)n Simple_repeat Simple_repeat 2 82 0 7 1370 383 220 44 35 chr5 102999887 103000000 -49537259 - ORR1D2 LTR MaLR -2 368 255 7 1370 715 223 167 35 chr5 103000001 103000229 -49537030 - ORR1D2 LTR MaLR -112 258 1 1 1370 265 276 66 0 chr5 103000384 103000460 -49536799 - ID4 SINE ID -2 81 1 2 1370 726 264 125 24 chr5 103001874 103002122 -49535137 - B4A SINE B4 -19 273 1 3 1370 2459 217 16 11 chr5 103004621 103005060 -49532199 - Lx6 LINE L1 -2 7458 7018 4 1370 459 0 0 0 chr5 103006861 103006912 -49530347 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1370 1243 51 0 0 chr5 103008084 103008222 -49529037 + B1_Mm SINE Alu 1 138 -9 6 1370 275 0 0 28 chr5 103008222 103008258 -49529001 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1370 224 185 0 36 chr5 103008838 103008894 -49528365 + GA-rich Low_complexity Low_complexity 4 57 0 8 1370 400 318 86 20 chr5 103009187 103009338 -49527921 + MIR SINE MIR 28 188 -74 9 1370 216 175 77 10 chr5 103009345 103009449 -49527810 + (TA)n Simple_repeat Simple_repeat 2 112 0 1 1370 339 198 33 55 chr5 103009406 103009588 -49527671 + (TATAA)n Simple_repeat Simple_repeat 1 178 0 1 1370 181 128 43 0 chr5 103009588 103009635 -49527624 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1370 923 175 179 5 chr5 103009823 103010013 -49527246 - URR1B DNA MER1_type 0 225 3 1 1370 1677 52 0 0 chr5 103010855 103011048 -49526211 - B2_Mm1t SINE B2 0 193 1 1 1370 213 159 23 0 chr5 103013635 103013679 -49523580 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1 1370 258 345 134 25 chr5 103013687 103013806 -49523453 + B1F1 SINE Alu 10 141 -8 1 1370 193 222 75 14 chr5 103014716 103014808 -49522451 + MIRm SINE MIR 81 183 -25 1 1370 1017 221 29 10 chr5 103015337 103015543 -49521716 - B3 SINE B2 -5 211 2 1 1370 394 307 9 9 chr5 103016915 103017030 -49520229 - B1F SINE Alu -7 142 28 1 1370 357 159 0 0 chr5 103017845 103017908 -49519351 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1370 368 87 29 0 chr5 103018094 103018163 -49519096 + (CATA)n Simple_repeat Simple_repeat 2 72 0 2 1370 238 286 190 48 chr5 103018324 103018614 -49518645 - L1M3c LINE L1 -4394 2713 2383 2 1370 365 206 11 0 chr5 103018629 103018721 -49518538 + CT-rich Low_complexity Low_complexity 3 95 0 2 1370 450 308 95 24 chr5 103018808 103019217 -49518042 - L1M3c LINE L1 -4800 2237 1783 2 1370 224 328 31 15 chr5 103019364 103019429 -49517830 + B4 SINE B4 75 140 -152 2 1370 232 334 20 0 chr5 103019381 103019494 -49517765 + B1F2 SINE Alu 8 124 -25 2 1370 398 301 90 0 chr5 103020368 103020524 -49516735 + MER58C DNA MER1_type 45 214 -1 2 1370 313 250 33 33 chr5 103020586 103020677 -49516582 - MER20 DNA MER1_type -22 197 107 2 1370 411 320 110 6 chr5 103021130 103021312 -49515947 + Tigger5 DNA MER2_type 40 240 -2166 2 1370 21 0 0 0 chr5 103021438 103021459 -49515800 + AT_rich Low_complexity Low_complexity 1 21 0 2 1370 467 282 25 17 chr5 103021497 103021616 -49515643 - PB1D7 SINE Alu 0 120 1 3 1370 244 256 24 24 chr5 103021766 103021850 -49515409 - L1M7 LINE L1 -5256 962 879 3 1370 459 0 0 0 chr5 103022164 103022215 -49515044 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1371 1642 198 35 32 chr5 103023607 103023951 -49513308 + ORR1D1 LTR MaLR 14 358 -16 3 1371 201 348 0 0 chr5 103024376 103024491 -49512768 + (CTGTG)n Simple_repeat Simple_repeat 4 118 0 3 1371 736 323 30 11 chr5 103025422 103025691 -49511568 - B4A SINE B4 -18 274 1 3 1371 23 33 0 0 chr5 103025970 103026000 -49511259 + AT_rich Low_complexity Low_complexity 1 30 0 3 1371 486 364 96 54 chr5 103026355 103026802 -49510457 + MER74A LTR ERVL 93 558 0 3 1371 21 0 0 0 chr5 103026816 103026837 -49510422 + AT_rich Low_complexity Low_complexity 1 21 0 3 1371 33 0 0 0 chr5 103026901 103026934 -49510325 + AT_rich Low_complexity Low_complexity 1 33 0 3 1371 741 201 278 0 chr5 103026940 103027109 -49510150 - B3 SINE B2 0 216 1 4 1371 1259 56 0 7 chr5 103027730 103027875 -49509384 + B1_Mm SINE Alu 4 147 0 4 1371 21 0 0 0 chr5 103028108 103028129 -49509130 + AT_rich Low_complexity Low_complexity 1 21 0 4 1371 38952 41 1 3 chr5 103028464 103034880 -49502379 - L1Md_T LINE L1 0 6585 83 4 1371 521 124 0 19 chr5 103035477 103035584 -49501675 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 4 1371 209 327 0 83 chr5 103036680 103036800 -49500459 + L2c LINE L2 3229 3338 -49 4 1371 307 194 29 29 chr5 103038352 103038421 -49498838 - B4 SINE B4 -43 249 181 4 1371 22 56 0 0 chr5 103038522 103038558 -49498701 + AT_rich Low_complexity Low_complexity 1 36 0 4 1371 308 319 127 32 chr5 103038987 103039207 -49498052 - MLT1B LTR MaLR -149 241 1 4 1371 7520 50 1 1 chr5 103040367 103041242 -49496017 + L1Md_F2 LINE L1 5708 6582 0 4 1371 4711 48 11 0 chr5 103041265 103041810 -49495449 + L1Md_F2 LINE L1 6030 6580 -2 5 1371 525 250 143 8 chr5 103043105 103043238 -49494021 - RSINE1 SINE B4 -1 164 14 5 1371 994 286 40 4 chr5 103043475 103043752 -49493507 - B4 SINE B4 -2 290 4 5 1371 7811 90 12 2 chr5 103045991 103047615 -49489644 - L1_Mus3 LINE L1 -1 6637 4995 5 1371 230 331 49 88 chr5 103047644 103047687 -49489572 - B3A SINE B2 0 198 2 5 1371 612 253 80 74 chr5 103047687 103047849 -49489410 - RSINE1 SINE B4 0 165 3 5 1371 1219 50 0 0 chr5 103048555 103048695 -49488564 + B1_Mm SINE Alu 2 141 -6 5 1371 342 0 0 0 chr5 103050911 103050949 -49486310 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1371 229 286 60 103 chr5 103051378 103051495 -49485764 - MIRc SINE MIR -123 145 34 5 1371 194 224 40 107 chr5 103052938 103053013 -49484246 + MIRc SINE MIR 96 165 -103 5 1371 3329 48 2 60 chr5 103053482 103053594 -49483665 + MTA_Mm LTR MaLR 1 106 -290 6 1371 1673 32 11 5 chr5 103053594 103053785 -49483474 - B2_Mm1t SINE B2 0 193 2 6 1371 3329 48 2 60 chr5 103053785 103054091 -49483168 + MTA_Mm LTR MaLR 107 395 -1 6 1371 2023 281 105 109 chr5 103054092 103055312 -49481947 + Lx8 LINE L1 6222 7436 -37 6 1371 246 308 53 77 chr5 103055177 103055346 -49481913 + RMER1C Other Other 1159 1323 -19 6 1371 221 0 35 0 chr5 103056352 103056381 -49480878 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1371 6192 68 9 1 chr5 103056818 103057617 -49479642 + L1_Mus3 LINE L1 5834 6638 0 6 1371 354 45 0 0 chr5 103058148 103058192 -49479067 + (TAA)n Simple_repeat Simple_repeat 1 44 0 6 1371 183 42 0 0 chr5 103059145 103059169 -49478090 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1371 275 247 11 69 chr5 103059169 103059256 -49478003 - PB1D10 SINE Alu -13 104 23 6 1371 280 337 84 20 chr5 103060432 103060635 -49476624 - MLT1H1 LTR MaLR -8 547 332 6 1371 2655 169 77 26 chr5 103060827 103061362 -49475897 + RLTR12A LTR ERVK 3 564 -4 7 1371 1018 39 0 62 chr5 103063812 103064004 -49473255 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 7 1371 203 83 28 0 chr5 103064004 103064033 -49473226 + (TTTCC)n Simple_repeat Simple_repeat 1 30 0 7 1371 678 85 0 0 chr5 103064033 103064127 -49473132 + (TTCCC)n Simple_repeat Simple_repeat 2 95 0 7 1371 203 83 28 0 chr5 103064127 103064133 -49473126 + (TTTCC)n Simple_repeat Simple_repeat 5 10 0 7 1371 918 97 28 28 chr5 103064151 103064331 -49472928 + CT-rich Low_complexity Low_complexity 1 180 0 7 1371 627 97 0 34 chr5 103064305 103064422 -49472837 + (TTCC)n Simple_repeat Simple_repeat 2 114 0 7 1371 549 44 0 0 chr5 103064422 103064490 -49472769 + (TC)n Simple_repeat Simple_repeat 2 69 0 7 1371 23 0 0 0 chr5 103065466 103065489 -49471770 + AT_rich Low_complexity Low_complexity 1 23 0 7 1371 517 360 55 28 chr5 103066500 103066826 -49470433 - MLT1A LTR MaLR -24 350 16 7 1371 1157 296 70 33 chr5 103067510 103067996 -49469263 + Lx9 LINE L1 6959 7462 -182 8 1371 474 125 0 0 chr5 103068005 103068085 -49469174 + (TG)n Simple_repeat Simple_repeat 1 80 0 8 1371 276 185 160 21 chr5 103068090 103068184 -49469075 + Lx9 LINE L1 7518 7624 -20 8 1371 761 95 9 0 chr5 103068209 103068325 -49468934 + (GGAAA)n Simple_repeat Simple_repeat 3 119 0 8 1371 21 0 0 0 chr5 103071319 103071340 -49465919 + AT_rich Low_complexity Low_complexity 1 21 0 8 1371 357 301 12 73 chr5 103071507 103071672 -49465587 + MLT1A0 LTR MaLR 20 174 -191 8 1371 252 273 217 0 chr5 103072004 103072147 -49465112 - L1M5 LINE L1 -272 5907 5734 8 1371 41317 22 4 6 chr5 103074163 103080968 -49456291 - L1Md_A LINE L1 0 6582 1 8 1371 181 269 39 0 chr5 103081267 103081319 -49455940 - MIRb SINE MIR -27 241 188 8 1371 215 61 30 0 chr5 103081330 103081363 -49455896 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 8 1371 1100 70 23 6 chr5 103081378 103081516 -49455743 + (TTCC)n Simple_repeat Simple_repeat 1 142 0 8 1371 1071 102 11 11 chr5 103081516 103081694 -49455565 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 8 1371 1100 70 23 6 chr5 103081694 103081727 -49455532 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 9 1371 720 191 11 6 chr5 103081739 103081918 -49455341 + CT-rich Low_complexity Low_complexity 1 180 0 9 1371 840 191 0 0 chr5 103081946 103082119 -49455140 + CT-rich Low_complexity Low_complexity 1 173 0 9 1371 214 220 34 0 chr5 103083710 103083769 -49453490 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 9 1371 504 255 0 9 chr5 103083881 103083992 -49453267 - PB1D10 SINE Alu -7 110 1 9 1371 725 190 197 22 chr5 103084665 103084843 -49452416 - B3 SINE B2 -6 210 2 9 1371 275 167 15 0 chr5 103086549 103086615 -49450644 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 9 1371 465 19 0 0 chr5 103086655 103086709 -49450550 + (CA)n Simple_repeat Simple_repeat 2 55 0 9 1371 23 68 0 0 chr5 103087175 103087219 -49450040 + AT_rich Low_complexity Low_complexity 1 44 0 9 1371 234 240 20 0 chr5 103087857 103087907 -49449352 + CT-rich Low_complexity Low_complexity 3 53 0 9 1371 306 0 0 0 chr5 103088067 103088101 -49449158 + (GA)n Simple_repeat Simple_repeat 2 35 0 9 1371 441 256 44 55 chr5 103088770 103088884 -49448375 - MLT1D LTR MaLR -314 191 77 1 1371 1671 63 0 31 chr5 103088884 103089113 -49448146 - L1_Mus1 LINE L1 0 6567 6346 1 1371 441 256 44 55 chr5 103089113 103089180 -49448079 - MLT1D LTR MaLR -429 76 12 1 1371 346 252 24 101 chr5 103089233 103089401 -49447858 - Lx4A LINE L1 -3 7055 6901 1 1371 22 35 0 0 chr5 103089411 103089440 -49447819 + AT_rich Low_complexity Low_complexity 1 29 0 1 1371 369 219 47 19 chr5 103089469 103089576 -49447683 + RMER13A LTR ERVK 32 141 -719 1 1371 2812 91 36 23 chr5 103089846 103090238 -49447021 - MTB LTR MaLR -3 397 1 1 1371 444 285 50 75 chr5 103090865 103091066 -49446193 - B3A SINE B2 0 198 3 1 1371 652 160 128 0 chr5 103091983 103092108 -49445151 + B1_Mur2 SINE Alu 9 149 0 1 1371 203 319 0 0 chr5 103092323 103092392 -49444867 - L2 LINE L2 -1613 1806 1738 1 1371 483 224 0 25 chr5 103092415 103092534 -49444725 - MLT1A1 LTR MaLR -2 406 291 1 1371 225 114 33 66 chr5 103095229 103095351 -49441908 + (TA)n Simple_repeat Simple_repeat 2 119 0 1 1371 2183 151 43 5 chr5 103096382 103096781 -49440478 + Lx LINE L1 6241 6654 0 1 1371 895 252 19 19 chr5 103097512 103097726 -49439533 - B3 SINE B2 -1 215 2 1 1371 31 88 0 0 chr5 103098189 103098269 -49438990 + AT_rich Low_complexity Low_complexity 1 80 0 1 1371 295 339 136 18 chr5 103098273 103098501 -49438758 - LTR16A LTR ERVL -15 436 182 1 1371 231 36 0 0 chr5 103098562 103098590 -49438669 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1371 736 204 34 34 chr5 103100442 103100620 -49436639 + B3A SINE B2 3 180 -18 1 1371 22 35 0 0 chr5 103100635 103100664 -49436595 + AT_rich Low_complexity Low_complexity 1 29 0 1 1371 793 246 16 16 chr5 103100717 103100911 -49436348 - B3A SINE B2 0 198 5 1 1371 409 331 95 0 chr5 103101544 103101713 -49435546 - MER58B DNA MER1_type 0 341 157 1 1371 403 220 32 48 chr5 103101749 103101873 -49435386 + B1F SINE Alu 28 149 0 1 1371 689 305 50 8 chr5 103101878 103102139 -49435120 + B4 SINE B4 3 274 -18 1 1371 255 31 0 0 chr5 103102182 103102214 -49435045 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1371 234 193 0 0 chr5 103102216 103102273 -49434986 + (TA)n Simple_repeat Simple_repeat 2 58 0 1 1371 251 286 0 16 chr5 103102299 103102363 -49434896 + GA-rich Low_complexity Low_complexity 2 64 0 1 1371 331 290 18 45 chr5 103102363 103102475 -49434784 + B1F SINE Alu 40 148 -1 1 1371 21 0 0 0 chr5 103102484 103102505 -49434754 + AT_rich Low_complexity Low_complexity 1 21 0 1 1371 373 219 238 0 chr5 103102505 103102610 -49434649 - MER58B DNA MER1_type -211 130 1 1 1371 307 306 55 14 chr5 103105285 103105431 -49431828 - MLT1B LTR MaLR 0 390 239 1 1371 200 252 35 26 chr5 103105431 103105545 -49431714 + (TCTCTG)n Simple_repeat Simple_repeat 1 115 0 1 1371 380 267 57 70 chr5 103105574 103105731 -49431528 - MLT1B LTR MaLR -116 274 120 1 1371 1968 149 36 3 chr5 103106947 103107284 -49429975 + Lx2 LINE L1 6647 6994 -3 1 1371 271 326 56 0 chr5 103107888 103107977 -49429282 - PB1D10 SINE Alu -8 109 16 1 1371 961 243 15 0 chr5 103108106 103108308 -49428951 + B3 SINE B2 1 205 -11 1 1371 299 264 5 0 chr5 103108632 103108859 -49428400 + (TG)n Simple_repeat Simple_repeat 1 228 0 1 1371 273 206 0 0 chr5 103108870 103108962 -49428297 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1371 750 236 42 84 chr5 103108965 103109178 -49428081 - B3A SINE B2 -11 205 2 1 1371 202 321 89 27 chr5 103109262 103109374 -49427885 + L2b LINE L2 3238 3356 -19 1 1371 2294 75 42 3 chr5 103111447 103111755 -49425504 + Lx3_Mus LINE L1 6545 6864 -145 1 1371 908 153 35 17 chr5 103112216 103112389 -49424870 - URR1B DNA MER1_type 0 225 50 1 1371 423 313 130 42 chr5 103113149 103113503 -49423756 - L1MB8 LINE L1 -42 6142 5758 1 1371 1928 146 55 0 chr5 103114439 103114748 -49422511 - ORR1A3 LTR MaLR 0 326 1 1 1371 341 152 29 57 chr5 103115002 103115072 -49422187 + B1_Mur1 SINE Alu 55 122 -27 1 1371 683 127 0 7 chr5 103115089 103115240 -49422019 + (TCTA)n Simple_repeat Simple_repeat 4 153 0 1 1371 226 208 0 36 chr5 103115752 103115807 -49421452 + A-rich Low_complexity Low_complexity 1 53 0 1 1371 418 326 65 0 chr5 103115971 103116109 -49421150 + B1F2 SINE Alu 3 149 0 1 1371 210 128 0 0 chr5 103116134 103116173 -49421086 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 1 1371 319 235 37 0 chr5 103117493 103117574 -49419685 - 5S rRNA rRNA -37 84 1 1 1371 4423 154 34 18 chr5 103118578 103119411 -49417848 - Lx2 LINE L1 -3 6651 5829 1 1371 806 221 56 123 chr5 103122589 103122873 -49414386 + B4A SINE B4 7 271 -21 1 1371 442 255 22 128 chr5 103123569 103123749 -49413510 + B4A SINE B4 2 162 -130 1 1371 670 283 13 186 chr5 103123975 103124422 -49412837 - ORR1D2 LTR MaLR 0 370 1 1 1371 682 226 7 7 chr5 103124589 103124887 -49412372 + (CAG)n Simple_repeat Simple_repeat 1 298 0 1 1371 32 43 0 0 chr5 103125065 103125111 -49412148 + AT_rich Low_complexity Low_complexity 1 46 0 1 1371 441 0 0 0 chr5 103125288 103125337 -49411922 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1371 468 0 0 0 chr5 103125397 103125449 -49411810 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1371 347 300 113 14 chr5 103125452 103125594 -49411665 + B3A SINE B2 8 163 -35 1 1371 731 186 31 25 chr5 103125607 103125767 -49411492 - ORR1C2 LTR MaLR -7 377 217 1 1371 490 276 0 0 chr5 103125765 103125881 -49411378 - B3 SINE B2 -69 147 32 1 1371 431 297 0 4 chr5 103125999 103126262 -49410997 + (TG)n Simple_repeat Simple_repeat 1 261 0 1 1371 23 0 0 0 chr5 103127164 103127187 -49410072 + AT_rich Low_complexity Low_complexity 1 23 0 1 1371 1136 185 19 0 chr5 103128029 103128234 -49409025 + B3 SINE B2 1 209 -7 1 1371 3512 25 2 0 chr5 103128254 103128649 -49408610 + MTA_Mm LTR MaLR 1 396 0 1 1371 9875 15 0 0 chr5 103128649 103129747 -49407512 + MTA_Mm-int LTR MaLR 1 1098 0 1 1371 3512 25 2 0 chr5 103129747 103130142 -49407117 + MTA_Mm LTR MaLR 1 396 0 1 1371 9854 16 0 0 chr5 103130142 103131240 -49406019 + MTA_Mm-int LTR MaLR 1 1098 0 1 1371 3512 25 2 0 chr5 103131240 103131635 -49405624 + MTA_Mm LTR MaLR 1 396 0 1 1371 234 0 0 0 chr5 103132633 103132659 -49404600 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1371 847 258 5 5 chr5 103133370 103133565 -49403694 + B3 SINE B2 15 209 -7 1 1371 207 100 0 0 chr5 103133668 103133698 -49403561 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 1371 429 20 0 0 chr5 103133708 103133758 -49403501 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1371 2198 72 3 27 chr5 103135990 103136291 -49400968 - L1_Mus3 LINE L1 -604 5962 5669 1 1371 4452 108 6 3 chr5 103136291 103137020 -49400239 + L1_Mus3 LINE L1 5974 6638 0 1 1371 329 333 30 0 chr5 103137808 103137943 -49399316 - L1MA6 LINE L1 -49 6251 6113 1 1371 198 304 70 57 chr5 103138693 103138850 -49398409 - MIRm SINE MIR -113 163 5 1 1371 247 246 14 0 chr5 103140677 103140746 -49396513 - ID4 SINE ID -13 70 1 1 1371 387 127 0 0 chr5 103141086 103141149 -49396110 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 1 1371 217 121 0 0 chr5 103141149 103141182 -49396077 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1371 207 0 0 0 chr5 103141182 103141205 -49396054 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1371 646 152 18 0 chr5 103141263 103141375 -49395884 - B3 SINE B2 -101 115 2 1 1371 201 74 0 0 chr5 103142734 103142761 -49394498 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 1 1371 1646 159 43 34 chr5 103142771 103142918 -49394341 - Lx3C LINE L1 -4 6972 6827 1 1371 576 0 0 0 chr5 103142918 103142982 -49394277 + (TC)n Simple_repeat Simple_repeat 2 65 0 1 1371 1646 159 43 34 chr5 103142982 103143160 -49394099 - Lx3C LINE L1 -150 6826 6645 1 1371 1249 95 45 0 chr5 103143331 103143510 -49393749 - B2_Mm1t SINE B2 -6 187 1 1 1371 375 329 20 7 chr5 103144341 103144494 -49392765 - MIR3 SINE MIR -3 205 51 1 1371 652 339 112 26 chr5 103144823 103145286 -49391973 - MLT2B1 LTR ERVL -8 512 10 1 1371 331 189 11 32 chr5 103145488 103145581 -49391678 + (ATG)n Simple_repeat Simple_repeat 3 93 0 1 1371 228 338 0 0 chr5 103145589 103145663 -49391596 - ID4_ SINE ID -8 75 2 1 1371 349 176 218 42 chr5 103146402 103146544 -49390715 - Lx9 LINE L1 -1 7643 7477 1 1371 318 267 285 0 chr5 103147021 103147094 -49390165 + ID_B1 SINE B4 1 217 -3 1 1371 323 242 53 42 chr5 103147094 103147189 -49390070 + PB1D7 SINE Alu 18 113 -7 1 1371 635 232 0 10 chr5 103147512 103147922 -49389337 + (CA)n Simple_repeat Simple_repeat 1 405 0 1 1371 1071 68 24 18 chr5 103147977 103148141 -49389118 - L1_Mus4 LINE L1 -7 6629 6465 1 1371 632 142 15 37 chr5 103150823 103151098 -49386161 + (TG)n Simple_repeat Simple_repeat 1 268 0 1 1371 266 362 11 0 chr5 103151521 103151615 -49385644 + B1F1 SINE Alu 10 104 -45 1 1371 259 245 223 0 chr5 103151708 103151802 -49385457 - B1F2 SINE Alu -3 117 3 1 1371 264 281 84 37 chr5 103152365 103152472 -49384787 + PB1D10 SINE Alu 3 114 -3 1 1371 233 315 90 0 chr5 103152476 103152565 -49384694 + ID_B1 SINE B4 2 98 -126 1 1371 476 345 19 44 chr5 103152583 103152789 -49384470 + B4A SINE B4 1 201 -91 1 1371 239 276 42 110 chr5 103152789 103152907 -49384352 + B4A SINE B4 161 270 -22 1 1371 415 321 25 6 chr5 103153029 103153186 -49384073 + B4 SINE B4 2 161 -131 1 1372 185 245 143 0 chr5 103153792 103153841 -49383418 + MIRm SINE MIR 116 171 -105 1 1372 21 0 0 0 chr5 103153944 103153965 -49383294 + GC_rich Low_complexity Low_complexity 1 21 0 1 1372 975 88 88 0 chr5 103155828 103155964 -49381295 + B1_Mus1 SINE Alu 1 148 0 1 1372 441 110 0 0 chr5 103155964 103156046 -49381213 + (A)n Simple_repeat Simple_repeat 1 82 0 1 1372 248 272 43 11 chr5 103156074 103156167 -49381092 - Tigger15a DNA TcMar -585 130 35 1 1372 457 88 12 12 chr5 103156751 103156832 -49380427 + (CA)n Simple_repeat Simple_repeat 2 82 0 1 1372 564 15 0 0 chr5 103158443 103158508 -49378751 + (TCTCCC)n Simple_repeat Simple_repeat 3 67 0 1 1372 364 275 106 8 chr5 103159650 103159782 -49377477 - B1_Mus2 SINE Alu 0 147 3 2 1372 183 129 0 0 chr5 103159976 103160007 -49377252 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 2 1372 1447 65 38 0 chr5 103160271 103160456 -49376803 + B2_Mm2 SINE B2 2 193 -2 2 1372 810 250 68 0 chr5 103160511 103160703 -49376556 + B3 SINE B2 5 209 -7 2 1372 405 0 0 0 chr5 103161061 103161106 -49376153 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1372 1063 92 0 7 chr5 103163891 103164034 -49373225 + B1_Mus2 SINE Alu 5 146 -1 2 1372 605 265 73 20 chr5 103165898 103166102 -49371157 + B3 SINE B2 1 215 -1 2 1372 322 339 115 69 chr5 103166592 103166896 -49370363 + MTEa LTR MaLR 4 321 -58 2 1372 481 139 0 0 chr5 103167129 103167208 -49370051 + B3 SINE B2 18 96 -120 2 1372 228 35 0 0 chr5 103167265 103167294 -49369965 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2 1372 384 299 65 14 chr5 103168132 103168346 -49368913 - L1MA6 LINE L1 0 6300 6076 2 1372 23 0 0 0 chr5 103168708 103168731 -49368528 + AT_rich Low_complexity Low_complexity 1 23 0 2 1372 264 122 0 0 chr5 103170150 103170191 -49367068 + (CAT)n Simple_repeat Simple_repeat 3 43 0 2 1372 467 239 7 42 chr5 103170202 103170346 -49366913 - RSINE1 SINE B4 -4 161 23 2 1372 288 229 180 87 chr5 103170667 103170690 -49366569 - B2_Mm2 SINE B2 -7 188 163 2 1372 207 69 0 0 chr5 103170690 103170719 -49366540 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1372 460 229 180 87 chr5 103170719 103170867 -49366392 - B3A SINE B2 -34 164 1 2 1372 498 161 0 0 chr5 103171522 103171634 -49365625 + (TG)n Simple_repeat Simple_repeat 1 112 0 2 1372 273 307 34 0 chr5 103171647 103171772 -49365487 - PB1D10 SINE Alu -13 136 1 2 1372 234 252 0 0 chr5 103171864 103171979 -49365280 + (CA)n Simple_repeat Simple_repeat 2 116 0 2 1372 201 258 0 15 chr5 103172553 103172620 -49364639 + A-rich Low_complexity Low_complexity 6 71 0 2 1372 450 0 0 0 chr5 103172898 103172948 -49364311 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1372 186 103 0 0 chr5 103172964 103172993 -49364266 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 1372 579 309 131 15 chr5 103173090 103173350 -49363909 - B4 SINE B4 0 292 3 2 1372 845 284 141 27 chr5 103173561 103173966 -49363293 - LTR41 LTR ERVL -1 767 317 2 1372 495 0 0 0 chr5 103174040 103174095 -49363164 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 1372 246 243 11 22 chr5 103174155 103174336 -49362923 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1372 181 228 25 0 chr5 103174421 103174500 -49362759 + (TATG)n Simple_repeat Simple_repeat 4 84 0 2 1372 319 283 0 56 chr5 103174538 103174565 -49362694 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1372 324 0 0 0 chr5 103174565 103174601 -49362658 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1372 319 283 0 56 chr5 103174601 103174734 -49362525 + (TG)n Simple_repeat Simple_repeat 2 128 0 2 1372 332 313 55 15 chr5 103174765 103174966 -49362293 - LTR41 LTR ERVL -537 231 23 2 1372 846 143 6 12 chr5 103177793 103177956 -49359303 + CT-rich Low_complexity Low_complexity 2 163 0 2 1372 263 322 11 44 chr5 103178002 103178093 -49359166 - RSINE1 SINE B4 0 165 78 2 1372 695 224 0 47 chr5 103178711 103178861 -49358398 + B1_Mur4 SINE Alu 1 143 -7 2 1372 188 111 28 0 chr5 103180263 103180299 -49356960 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 2 1372 593 190 17 0 chr5 103180343 103180459 -49356800 - B1_Mur2 SINE Alu -31 118 1 2 1372 270 0 0 0 chr5 103180469 103180499 -49356760 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 2 1372 600 107 0 10 chr5 103180541 103180645 -49356614 - L1_Mus3 LINE L1 0 6638 6536 2 1372 539 43 0 55 chr5 103180645 103180718 -49356541 + L1_Mus3 LINE L1 6411 6479 -159 2 1372 216 250 42 0 chr5 103182338 103182386 -49354873 + PB1 SINE Alu 68 117 -10 2 1372 251 122 0 0 chr5 103182355 103182396 -49354863 + B1F SINE Alu 108 148 -1 2 1372 216 158 0 0 chr5 103182396 103182434 -49354825 + GA-rich Low_complexity Low_complexity 1 38 0 2 1372 1305 83 0 0 chr5 103182436 103182616 -49354643 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1372 4743 41 0 11 chr5 103182808 103183379 -49353880 - L1Md_T LINE L1 0 6582 6018 2 1372 702 0 0 0 chr5 103184735 103184813 -49352446 + (TTTTG)n Simple_repeat Simple_repeat 1 78 0 2 1372 989 111 0 0 chr5 103184813 103184948 -49352311 - B1_Mus1 SINE Alu -13 135 1 2 1372 240 294 11 11 chr5 103186088 103186181 -49351078 - L1MA9 LINE L1 -24 6288 6196 2 1372 1967 288 45 42 chr5 103186232 103186530 -49350729 - L1MA9 LINE L1 -234 6078 5774 2 1372 492 59 0 0 chr5 103186530 103186598 -49350661 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1372 1967 283 124 33 chr5 103186598 103187388 -49349871 - L1MA9 LINE L1 -539 5773 4918 2 1372 390 143 0 0 chr5 103187744 103187835 -49349424 + (TC)n Simple_repeat Simple_repeat 1 91 0 2 1372 210 37 0 0 chr5 103188124 103188151 -49349108 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1372 653 55 0 11 chr5 103188539 103188630 -49348629 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 2 1372 880 81 113 0 chr5 103188641 103188765 -49348494 - B1_Mus1 SINE Alu -9 139 2 2 1372 251 269 0 0 chr5 103189478 103189545 -49347714 + ID4_ SINE ID 12 78 -5 2 1372 248 206 15 31 chr5 103190514 103190609 -49346650 + (CATG)n Simple_repeat Simple_repeat 1 93 0 2 1372 213 271 0 0 chr5 103192024 103192072 -49345187 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 2 1372 288 0 0 0 chr5 103192073 103192105 -49345154 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1372 216 0 0 0 chr5 103192105 103192128 -49345131 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 1372 463 366 12 33 chr5 103193206 103193449 -49343810 + Tigger5 DNA MER2_type 2 239 -2167 2 1372 512 252 16 0 chr5 103194346 103194473 -49342786 - ID_B1 SINE B4 -1 223 95 2 1372 447 290 70 30 chr5 103195414 103195613 -49341646 + B3 SINE B2 10 216 0 2 1372 268 217 58 0 chr5 103195922 103195991 -49341268 + MIRb SINE MIR 133 205 -63 2 1372 498 153 0 0 chr5 103197385 103197496 -49339763 + GA-rich Low_complexity Low_complexity 1 111 0 2 1372 459 0 0 0 chr5 103197767 103197818 -49339441 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1372 208 221 29 14 chr5 103198480 103198549 -49338710 + (TG)n Simple_repeat Simple_repeat 1 70 0 2 1372 22 0 0 0 chr5 103200120 103200142 -49337117 + AT_rich Low_complexity Low_complexity 1 22 0 2 1372 547 332 24 14 chr5 103200805 103201016 -49336243 - ID_B1 SINE B4 -4 220 8 2 1372 208 140 45 23 chr5 103203598 103203642 -49333617 + C-rich Low_complexity Low_complexity 3 47 0 2 1372 204 40 0 0 chr5 103204664 103204689 -49332570 + (TC)n Simple_repeat Simple_repeat 1 25 0 2 1372 289 271 160 24 chr5 103205177 103205209 -49332050 + B1F SINE Alu 8 149 0 2 1372 310 269 97 0 chr5 103205209 103205302 -49331957 + ID_B1 SINE B4 123 224 0 2 1372 416 161 0 12 chr5 103205445 103205527 -49331732 + CT-rich Low_complexity Low_complexity 2 82 0 2 1372 592 291 31 67 chr5 103205544 103205769 -49331490 - ID_B1 SINE B4 -3 221 5 2 1372 267 268 17 59 chr5 103206223 103206342 -49330917 - MLT1B LTR MaLR -138 252 139 2 1372 254 267 11 0 chr5 103207860 103207950 -49329309 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1372 820 160 0 23 chr5 103207928 103208101 -49329158 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 2 1372 318 257 9 56 chr5 103208140 103208247 -49329012 - MLT1B LTR MaLR -138 252 151 2 1372 858 298 39 61 chr5 103208499 103208860 -49328399 - ORR1D2 LTR MaLR -13 357 5 2 1372 6082 93 8 12 chr5 103210124 103210982 -49326277 - Lx2 LINE L1 -1 6996 6142 2 1372 568 289 296 10 chr5 103211358 103211659 -49325600 - MTD LTR MaLR -14 405 19 2 1372 2036 191 21 28 chr5 103213739 103214118 -49323141 - Lx5 LINE L1 -112 6938 6582 2 1372 420 111 0 0 chr5 103214874 103214937 -49322322 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 2 1372 21 0 0 0 chr5 103215702 103215723 -49321536 + AT_rich Low_complexity Low_complexity 1 21 0 2 1372 3176 203 88 49 chr5 103215723 103215844 -49321415 - Lx9 LINE L1 0 7644 7515 2 1372 306 0 0 0 chr5 103215844 103215878 -49321381 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1372 3176 203 88 49 chr5 103215878 103216596 -49320663 - Lx9 LINE L1 -130 7514 6774 2 1372 374 170 11 0 chr5 103217068 103217162 -49320097 + GA-rich Low_complexity Low_complexity 1 95 0 2 1372 369 0 0 0 chr5 103217888 103217929 -49319330 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1372 429 109 32 32 chr5 103218058 103218153 -49319106 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 2 1372 543 31 0 0 chr5 103218267 103218332 -49318927 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1372 495 48 0 0 chr5 103220367 103220429 -49316830 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1372 210 245 0 0 chr5 103221546 103221595 -49315664 + (TTAGGG)n Simple_repeat Simple_repeat 6 54 0 2 1372 418 71 43 0 chr5 103221617 103221687 -49315572 + (TTAGGG)n Simple_repeat Simple_repeat 2 74 0 2 1372 23 0 0 0 chr5 103222304 103222327 -49314932 + AT_rich Low_complexity Low_complexity 1 23 0 2 1372 964 271 60 47 chr5 103223758 103224075 -49313184 - ORR1E LTR MaLR -31 328 8 2 1372 1456 85 21 16 chr5 103224159 103224350 -49312909 + B2_Mm2 SINE B2 3 194 -1 2 1372 3936 32 2 0 chr5 103226171 103226608 -49310651 - L1Md_T LINE L1 0 6582 6145 2 1372 261 282 75 28 chr5 103226632 103226738 -49310521 + L1MC3 LINE L1 6767 6877 -1118 2 1372 470 211 3 26 chr5 103226746 103227059 -49310200 + (CA)n Simple_repeat Simple_repeat 1 305 0 2 1372 450 0 0 0 chr5 103227059 103227109 -49310150 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1372 1317 28 7 0 chr5 103227195 103227340 -49309919 + B1_Mus1 SINE Alu 3 148 0 2 1372 233 143 54 0 chr5 103227340 103227396 -49309863 + A-rich Low_complexity Low_complexity 1 59 0 2 1372 1032 276 136 21 chr5 103227416 103227975 -49309284 + L1MC3 LINE L1 6990 7612 -173 2 1372 318 299 20 10 chr5 103228169 103228267 -49308992 + B4A SINE B4 168 266 -26 2 1372 966 56 0 0 chr5 103228290 103228415 -49308844 + (CA)n Simple_repeat Simple_repeat 2 126 0 2 1372 755 317 17 22 chr5 103229033 103229265 -49307994 - B4A SINE B4 -16 276 46 2 1372 324 0 0 0 chr5 103229274 103229310 -49307949 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 3 1372 211 274 106 30 chr5 103229656 103229788 -49307471 + MIRb SINE MIR 121 262 -6 3 1372 341 324 9 18 chr5 103230344 103230454 -49306805 + PB1D10 SINE Alu 1 109 -8 3 1372 268 341 87 0 chr5 103231173 103231311 -49305948 - Arthur1B DNA Tip100 -911 314 165 3 1372 588 296 161 50 chr5 103232753 103233092 -49304167 + Lx8 LINE L1 6921 7329 -144 3 1372 225 94 0 0 chr5 103233092 103233124 -49304135 + (CAA)n Simple_repeat Simple_repeat 3 34 0 3 1372 588 296 161 50 chr5 103233124 103233282 -49303977 + Lx8 LINE L1 7330 7473 0 3 1372 29 0 0 0 chr5 103234067 103234096 -49303163 + AT_rich Low_complexity Low_complexity 1 29 0 3 1372 213 351 99 0 chr5 103235732 103235843 -49301416 + MIR3 SINE MIR 34 155 -53 3 1372 189 171 0 0 chr5 103237737 103237772 -49299487 + A-rich Low_complexity Low_complexity 1 35 0 3 1372 31 0 0 0 chr5 103240831 103240862 -49296397 + GC_rich Low_complexity Low_complexity 1 31 0 3 1372 240 111 0 0 chr5 103241391 103241427 -49295832 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1372 540 251 200 6 chr5 103241440 103241620 -49295639 + B3 SINE B2 2 216 0 3 1372 1052 90 7 27 chr5 103242111 103242260 -49294999 + B1_Mus2 SINE Alu 1 146 -1 3 1372 214 375 113 24 chr5 103243039 103243252 -49294007 - L2c LINE L2 -78 3309 3078 3 1372 1546 176 59 78 chr5 103245736 103246144 -49291115 - RMER17C LTR ERVK -8 402 3 3 1372 320 204 112 11 chr5 103246198 103246287 -49290972 - B1_Mur4 SINE Alu -11 139 42 3 1372 445 132 0 0 chr5 103246241 103246309 -49290950 - 4.5SRNA scRNA scRNA -10 84 17 3 1372 1093 148 0 0 chr5 103246312 103246481 -49290778 + RMER13B LTR ERVK 226 394 -514 3 1372 201 24 23 68 chr5 103246628 103246672 -49290587 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 3 1372 388 0 39 0 chr5 103248009 103248061 -49289198 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1372 1146 66 0 0 chr5 103248061 103248197 -49289062 - B1_Mus1 SINE Alu -11 137 2 3 1372 293 336 65 50 chr5 103248502 103248900 -49288359 - Tigger13a DNA MER2_type -92 679 276 3 1372 452 175 39 10 chr5 103249047 103249151 -49288108 - B1F SINE Alu 0 149 43 3 1372 389 340 24 54 chr5 103251622 103251790 -49285469 + RSINE1 SINE B4 1 163 -2 3 1372 374 274 44 0 chr5 103251997 103252110 -49285149 + PB1D7 SINE Alu 1 118 -2 3 1372 198 103 0 0 chr5 103253004 103253033 -49284226 + (T)n Simple_repeat Simple_repeat 1 29 0 3 1372 476 216 0 147 chr5 103253197 103253333 -49283926 + RSINE1 SINE B4 46 161 -4 3 1372 267 152 0 0 chr5 103253336 103253382 -49283877 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1372 557 28 14 0 chr5 103253386 103253457 -49283802 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 3 1372 2125 110 3 23 chr5 103253783 103254090 -49283169 + Lx2 LINE L1 6684 6984 -13 3 1372 363 44 0 0 chr5 103254090 103254135 -49283124 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1372 675 258 53 0 chr5 103254143 103254294 -49282965 + B3 SINE B2 48 206 -10 3 1372 298 22 21 42 chr5 103254981 103255029 -49282230 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 1372 277 281 178 0 chr5 103255298 103255433 -49281826 - MER96B DNA hAT -216 201 43 3 1372 23 33 0 0 chr5 103255913 103255943 -49281316 + AT_rich Low_complexity Low_complexity 1 30 0 3 1372 698 238 6 48 chr5 103255944 103256112 -49281147 - RSINE1 SINE B4 -2 163 3 3 1372 351 0 0 0 chr5 103256645 103256684 -49280575 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1372 297 319 109 61 chr5 103256861 103257008 -49280251 - B4A SINE B4 -137 155 2 3 1372 835 310 141 42 chr5 103257285 103257783 -49279476 + Tigger7 DNA MER2_type 6 542 -8 3 1372 237 178 0 0 chr5 103258134 103258179 -49279080 + (TTA)n Simple_repeat Simple_repeat 2 46 0 3 1372 703 294 106 10 chr5 103259466 103259871 -49277388 - Lx9 LINE L1 -28 7616 7173 3 1372 348 119 0 0 chr5 103260496 103260555 -49276704 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1372 227 313 67 48 chr5 103260588 103260692 -49276567 - B4A SINE B4 -8 284 179 3 1372 762 151 9 3 chr5 103260761 103260898 -49276361 - B1_Mur4 SINE Alu 0 150 14 3 1372 883 218 42 87 chr5 103261218 103261570 -49275689 - RMER13A LTR ERVK -453 407 30 3 1372 218 108 54 0 chr5 103261590 103261627 -49275632 - B1_Mus1 SINE Alu -88 60 22 3 1372 231 36 0 0 chr5 103261628 103261656 -49275603 + (ATGGTG)n Simple_repeat Simple_repeat 4 31 0 3 1372 21 36 0 0 chr5 103262719 103262747 -49274512 + AT_rich Low_complexity Low_complexity 1 28 0 3 1372 184 186 0 33 chr5 103262840 103262901 -49274358 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1372 550 292 17 17 chr5 103262902 103263083 -49274176 - B3A SINE B2 -15 183 3 3 1372 960 125 0 3 chr5 103263153 103263458 -49273801 + (CA)n Simple_repeat Simple_repeat 1 303 0 3 1372 188 271 69 28 chr5 103263985 103264057 -49273202 + MIRc SINE MIR 162 236 -32 3 1372 485 243 0 53 chr5 103264964 103265077 -49272182 + PB1D10 SINE Alu 10 116 -1 3 1372 21 57 0 0 chr5 103265199 103265234 -49272025 + AT_rich Low_complexity Low_complexity 1 35 0 3 1372 274 294 39 0 chr5 103266513 103266615 -49270644 - ORR1E LTR MaLR -235 124 19 3 1372 478 131 29 29 chr5 103266760 103266806 -49270453 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 3 1372 1347 72 0 0 chr5 103266806 103266986 -49270273 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1372 478 131 29 29 chr5 103266986 103267041 -49270218 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 3 1372 346 281 191 9 chr5 103267754 103267947 -49269312 - MER44B DNA MER2_type -5 545 323 3 1372 837 71 0 0 chr5 103268349 103268462 -49268797 + (TCTCCC)n Simple_repeat Simple_repeat 3 115 0 3 1372 390 300 77 54 chr5 103270819 103271080 -49266179 + L1MB8 LINE L1 5793 6059 -119 3 1372 440 160 0 10 chr5 103271813 103271914 -49265345 + (TG)n Simple_repeat Simple_repeat 2 101 0 3 1372 189 254 0 0 chr5 103271951 103272022 -49265237 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 1372 357 301 0 0 chr5 103272046 103272159 -49265100 + (TG)n Simple_repeat Simple_repeat 2 114 0 3 1372 228 231 0 0 chr5 103272172 103272250 -49265009 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1372 276 248 0 0 chr5 103272311 103272428 -49264831 + (TG)n Simple_repeat Simple_repeat 1 117 0 3 1372 24 0 0 0 chr5 103272446 103272470 -49264789 + AT_rich Low_complexity Low_complexity 1 24 0 3 1372 3500 92 16 0 chr5 103272470 103272917 -49264342 - Lx3A LINE L1 -6 6975 6522 3 1372 354 293 105 89 chr5 103272971 103273012 -49264247 - B3A SINE B2 -4 194 152 3 1372 198 0 0 0 chr5 103273012 103273034 -49264225 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 1372 354 293 105 89 chr5 103273034 103273183 -49264076 - B3A SINE B2 -47 151 2 3 1372 441 0 0 0 chr5 103273291 103273340 -49263919 + (GA)n Simple_repeat Simple_repeat 2 50 0 3 1372 216 0 0 0 chr5 103273607 103273631 -49263628 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 3 1372 509 44 15 0 chr5 103273934 103274002 -49263257 + (GA)n Simple_repeat Simple_repeat 2 70 0 3 1372 195 162 0 0 chr5 103274786 103274823 -49262436 + (CAA)n Simple_repeat Simple_repeat 3 39 0 3 1372 2066 104 28 9 chr5 103277962 103278282 -49258977 - L1_Mus4 LINE L1 0 6636 6311 3 1372 558 29 0 0 chr5 103278787 103278855 -49258404 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 3 1372 243 0 0 0 chr5 103280067 103280094 -49257165 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1372 343 287 43 14 chr5 103280866 103281004 -49256255 + RMER15 LTR ERVL 303 444 -131 3 1372 6326 80 37 8 chr5 103281486 103283164 -49254095 - L1VL2 LINE L1 -1789 1826 94 3 1372 280 271 43 0 chr5 103283373 103283443 -49253816 + PB1D10 SINE Alu 40 112 -5 3 1372 29 0 0 0 chr5 103284443 103284472 -49252787 + AT_rich Low_complexity Low_complexity 1 29 0 3 1373 180 135 0 0 chr5 103286270 103286307 -49250952 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1373 234 0 0 0 chr5 103286318 103286344 -49250915 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1373 1037 110 21 0 chr5 103286344 103286489 -49250770 - B1_Mus1 SINE Alu 0 148 1 3 1373 504 248 148 13 chr5 103286581 103286810 -49250449 + L1MA6 LINE L1 4404 4663 -1480 3 1373 547 264 8 13 chr5 103286908 103287084 -49250175 + L1MA6 LINE L1 4914 5093 -1053 3 1373 1418 256 57 89 chr5 103287109 103287809 -49249450 + L1MA6 LINE L1 5341 6018 -282 3 1373 475 186 31 0 chr5 103287911 103288008 -49249251 + B1_Mus2 SINE Alu 4 103 -44 3 1373 250 98 19 19 chr5 103288013 103288065 -49249194 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 3 1373 274 324 95 0 chr5 103288071 103288219 -49249040 + L1MA6 LINE L1 6124 6285 -15 3 1373 24 0 0 0 chr5 103289933 103289957 -49247302 + AT_rich Low_complexity Low_complexity 1 24 0 3 1373 2487 83 6 0 chr5 103290310 103290635 -49246624 - ORR1A2 LTR MaLR 0 327 1 3 1373 406 285 71 93 chr5 103290934 103291116 -49246143 - B3A SINE B2 0 198 21 3 1373 2438 162 26 42 chr5 103291355 103291857 -49245402 + RLTR11A2 LTR ERVK 1 494 -33 3 1373 396 0 0 0 chr5 103291973 103292017 -49245242 + (CAGA)n Simple_repeat Simple_repeat 3 46 0 3 1373 550 75 37 9 chr5 103292044 103292151 -49245108 + (GA)n Simple_repeat Simple_repeat 2 111 0 3 1373 4989 32 0 5 chr5 103292686 103293276 -49243983 - L1Md_F3 LINE L1 -1 6583 5997 3 1373 730 293 98 45 chr5 103293347 103293633 -49243626 + MTEa LTR MaLR 7 307 -72 3 1373 247 239 83 14 chr5 103293633 103293705 -49243554 + MTEa LTR MaLR 281 357 -22 3 1373 207 295 93 19 chr5 103294612 103294719 -49242540 - L2a LINE L2 0 3426 3312 3 1373 1686 246 40 12 chr5 103295262 103295689 -49241570 - MT2A LTR ERVL -92 441 3 3 1373 22 0 0 0 chr5 103295697 103295719 -49241540 + AT_rich Low_complexity Low_complexity 1 22 0 3 1373 1416 74 0 6 chr5 103295920 103296097 -49241162 + B2_Mm2 SINE B2 1 176 -19 3 1373 225 132 0 0 chr5 103296105 103296143 -49241116 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 3 1373 226 185 43 71 chr5 103296854 103296924 -49240335 - ID4 SINE ID 0 83 16 3 1373 180 97 0 0 chr5 103297069 103297100 -49240159 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1373 194 255 36 18 chr5 103297849 103297905 -49239354 + MER5A DNA MER1_type 105 161 -28 3 1373 393 226 117 94 chr5 103298708 103298879 -49238380 - B3A SINE B2 0 198 24 3 1373 199 208 164 14 chr5 103299558 103299631 -49237628 + MIRb SINE MIR 100 183 -85 3 1373 214 122 24 0 chr5 103299654 103299695 -49237564 + ID4 SINE ID 2 43 -40 4 1373 32 75 0 0 chr5 103300058 103300125 -49237134 + AT_rich Low_complexity Low_complexity 1 67 0 4 1373 421 292 14 0 chr5 103300413 103300557 -49236702 + (TG)n Simple_repeat Simple_repeat 1 146 0 4 1373 254 304 56 28 chr5 103300751 103300893 -49236366 - MLT1B LTR MaLR -63 327 182 4 1373 360 0 0 0 chr5 103301755 103301795 -49235464 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1373 1339 92 22 0 chr5 103303088 103303273 -49233986 - B2_Mm2 SINE B2 -6 189 1 4 1373 1329 256 25 27 chr5 103303884 103304289 -49232970 - L1_Rod LINE L1 -53 5794 5391 4 1373 555 287 137 49 chr5 103305234 103305703 -49231556 - L1MB7 LINE L1 -53 6131 5622 4 1373 273 341 63 8 chr5 103305920 103306047 -49231212 - MER2B DNA MER2_type -15 321 188 4 1373 289 326 141 67 chr5 103306181 103306572 -49230687 - L1MB7 LINE L1 -838 5308 4889 4 1373 219 225 0 0 chr5 103309064 103309135 -49228124 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 4 1373 267 203 0 0 chr5 103309277 103309336 -49227923 + CT-rich Low_complexity Low_complexity 3 61 0 4 1373 706 258 109 79 chr5 103310199 103310629 -49226630 - RLTR12B LTR ERVK -34 494 52 4 1373 473 281 48 6 chr5 103311843 103312008 -49225251 - L1MB4 LINE L1 -85 6095 5924 4 1373 235 307 51 34 chr5 103313339 103313457 -49223802 + L1ME1 LINE L1 5579 5698 -481 4 1373 333 294 0 0 chr5 103313528 103313620 -49223639 + PB1D10 SINE Alu 9 100 -17 4 1373 232 270 0 0 chr5 103313632 103313695 -49223564 + Lx8 LINE L1 6963 7025 -448 4 1373 11626 60 6 1 chr5 103313686 103315154 -49222105 - L1Md_F2 LINE L1 -342 5541 4067 4 1373 587 68 14 0 chr5 103315141 103315215 -49222044 + L1Md_F2 LINE L1 5511 5585 -298 4 1373 7683 65 9 19 chr5 103315216 103316210 -49221049 + L1Md_F2 LINE L1 5587 6570 -12 4 1373 252 376 65 47 chr5 103316261 103316540 -49220719 + Lx8 LINE L1 7067 7350 -123 4 1373 306 304 33 42 chr5 103316808 103316928 -49220331 + MTE2a LTR MaLR 35 153 -266 4 1373 577 271 44 63 chr5 103316939 103317144 -49220115 + MTE2a LTR MaLR 179 379 0 4 1373 399 310 103 0 chr5 103317150 103317334 -49219925 + L1ME1 LINE L1 5909 6111 -68 4 1373 21 0 0 0 chr5 103317479 103317500 -49219759 + AT_rich Low_complexity Low_complexity 1 21 0 4 1373 404 307 90 11 chr5 103318169 103318211 -49219048 - B3A SINE B2 -5 193 154 4 1373 258 81 0 0 chr5 103318211 103318248 -49219011 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1373 436 281 104 0 chr5 103318248 103318383 -49218876 - B3 SINE B2 -66 150 2 4 1373 184 268 18 0 chr5 103318618 103318674 -49218585 + MIRm SINE MIR 93 149 -127 4 1373 779 324 158 46 chr5 103319159 103320203 -49217056 - L1M4 LINE L1 -5356 1186 26 4 1373 259 239 9 9 chr5 103320523 103320633 -49216626 + (TA)n Simple_repeat Simple_repeat 2 111 0 4 1373 234 319 28 28 chr5 103322666 103322811 -49214448 - Lx7 LINE L1 -592 7104 6960 4 1373 24 0 0 0 chr5 103326802 103326826 -49210433 + AT_rich Low_complexity Low_complexity 1 24 0 4 1373 350 267 88 58 chr5 103326988 103327159 -49210100 + B4A SINE B4 2 177 -115 4 1373 548 335 44 4 chr5 103327172 103327445 -49209814 - RMER15 LTR ERVL -16 559 276 4 1373 252 266 68 68 chr5 103327444 103327577 -49209682 - RMER15 LTR ERVL -416 159 27 4 1373 285 226 0 0 chr5 103327721 103327805 -49209454 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1373 378 42 0 0 chr5 103330236 103330284 -49206975 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1373 348 24 0 0 chr5 103331103 103331144 -49206115 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 4 1373 922 245 50 65 chr5 103331852 103332236 -49205023 - RMER2 LTR ERV1 0 567 190 4 1373 287 130 0 0 chr5 103332244 103332290 -49204969 - RMER2 LTR ERV1 -521 46 1 4 1373 217 224 46 39 chr5 103334239 103334392 -49202867 + (TATAA)n Simple_repeat Simple_repeat 4 157 0 4 1373 218 275 95 44 chr5 103334760 103334897 -49202362 + L2a LINE L2 3279 3422 -4 4 1373 306 73 0 0 chr5 103336073 103336114 -49201145 + (CTG)n Simple_repeat Simple_repeat 1 41 0 4 1373 363 247 11 21 chr5 103336732 103336827 -49200432 + PB1D10 SINE Alu 3 96 -21 4 1373 289 43 21 21 chr5 103340122 103340170 -49197089 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1373 261 57 0 0 chr5 103342065 103342100 -49195159 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1373 198 103 0 0 chr5 103344497 103344526 -49192733 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1373 720 229 15 4 chr5 103344537 103345022 -49192237 + (TG)n Simple_repeat Simple_repeat 1 490 0 4 1373 956 291 10 40 chr5 103345022 103345323 -49191936 - B4 SINE B4 0 292 1 4 1373 473 285 151 42 chr5 103345671 103346256 -49191003 - L1M4 LINE L1 -586 5598 4945 4 1373 476 141 40 7 chr5 103347267 103347417 -49189842 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 4 1373 669 260 103 40 chr5 103347496 103347769 -49189490 + MTEa LTR MaLR 3 292 -87 4 1373 295 305 94 9 chr5 103347808 103347914 -49189345 + MTEa LTR MaLR 256 370 -9 4 1373 194 91 30 0 chr5 103348015 103348048 -49189211 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4 1373 182 91 30 0 chr5 103348099 103348132 -49189127 + (CAA)n Simple_repeat Simple_repeat 3 36 0 4 1373 292 302 122 20 chr5 103348207 103348403 -49188856 - L1M4 LINE L1 -1615 4531 4316 4 1373 25 75 0 0 chr5 103349005 103349058 -49188201 + AT_rich Low_complexity Low_complexity 1 53 0 4 1373 318 356 69 5 chr5 103350047 103350236 -49187023 - MER63A DNA AcHobo 0 210 10 4 1373 560 307 24 19 chr5 103351469 103351675 -49185584 + MTEa-int LTR MaLR 1357 1563 -17 4 1373 522 306 97 44 chr5 103351692 103352013 -49185246 + MTEa LTR MaLR 1 338 -41 4 1373 180 111 0 0 chr5 103352190 103352217 -49185042 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 4 1373 2192 107 0 0 chr5 103352574 103352893 -49184366 + ORR1A2 LTR MaLR 1 319 -8 4 1373 6196 236 66 26 chr5 103353103 103354863 -49182396 + Lx9 LINE L1 5685 7643 -1 4 1373 246 241 19 0 chr5 103356563 103356617 -49180642 - RSINE1 SINE B4 -43 122 68 4 1373 251 136 0 17 chr5 103358299 103358359 -49178900 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 4 1373 22 0 0 0 chr5 103359586 103359608 -49177651 + AT_rich Low_complexity Low_complexity 1 22 0 4 1373 962 276 82 49 chr5 103360046 103360412 -49176847 + MTE2a LTR MaLR 1 378 -1 4 1373 21 36 0 0 chr5 103360825 103360853 -49176406 + AT_rich Low_complexity Low_complexity 1 28 0 4 1373 539 275 16 48 chr5 103361241 103361428 -49175831 + B3A SINE B2 2 182 -16 4 1373 37112 39 9 0 chr5 103362704 103367886 -49169373 + L1Md_A LINE L1 419 5586 -297 4 1373 8604 31 1 0 chr5 103367886 103368880 -49168379 + L1Md_A LINE L1 5587 6581 -1 4 1373 3458 140 18 38 chr5 103368941 103369602 -49167657 + RMER6A LTR ERVK 109 756 0 4 1373 345 273 149 64 chr5 103369696 103369805 -49167454 + L1M3e LINE L1 1858 1984 -5046 4 1373 225 65 0 0 chr5 103369805 103369836 -49167423 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 4 1373 345 273 149 64 chr5 103369836 103369914 -49167345 + L1M3e LINE L1 1985 2061 -4969 4 1373 407 174 0 25 chr5 103369988 103370121 -49167138 + ORR1B1 LTR MaLR 26 143 -251 4 1373 454 209 42 34 chr5 103370312 103370431 -49166828 + B1F SINE Alu 24 143 -6 4 1373 956 264 119 12 chr5 103370539 103370876 -49166383 + MTEb LTR MaLR 6 378 -1 4 1373 239 365 9 28 chr5 103370911 103371018 -49166241 + PB1D10 SINE Alu 4 108 -9 4 1373 1167 270 101 38 chr5 103371050 103371632 -49165627 + L1MA9 LINE L1 5418 6036 -276 4 1373 276 186 34 0 chr5 103372403 103372462 -49164797 - Lx LINE L1 -577 6077 6017 4 1373 1331 58 171 19 chr5 103372459 103372670 -49164589 + Lx LINE L1 6201 6443 -211 4 1373 680 252 15 0 chr5 103373221 103373356 -49163903 + ETnERV2-int LTR ERVK 7070 7206 -200 4 1373 1561 171 155 11 chr5 103374693 103375055 -49162204 + MTC LTR MaLR 3 407 -14 4 1373 414 0 0 0 chr5 103375723 103375769 -49161490 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1373 237 33 0 0 chr5 103377094 103377124 -49160135 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1373 467 240 19 0 chr5 103377156 103377260 -49159999 + B1_Mur1 SINE Alu 1 106 -43 4 1373 486 0 0 0 chr5 103377520 103377574 -49159685 + (TA)n Simple_repeat Simple_repeat 2 55 0 4 1373 187 288 85 31 chr5 103378611 103378740 -49158519 + L2c LINE L2 3101 3236 -151 4 1373 234 0 0 0 chr5 103378745 103378771 -49158488 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1373 612 217 0 0 chr5 103380570 103380708 -49156551 + GA-rich Low_complexity Low_complexity 2 139 0 4 1373 279 0 0 0 chr5 103380717 103380748 -49156511 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 4 1373 2301 154 47 10 chr5 103383322 103383728 -49153531 + MTC LTR MaLR 1 421 0 4 1373 1745 167 108 16 chr5 103383729 103384119 -49153140 + MTC-int LTR MaLR 4 428 -830 4 1373 5037 54 0 0 chr5 103384119 103384731 -49152528 - L1Md_F2 LINE L1 0 6582 5971 4 1373 620 179 6 70 chr5 103384731 103384747 -49152512 + MTC-int LTR MaLR 1079 1095 -868 4 1373 6039 42 2 0 chr5 103384747 103385559 -49151700 + L1Md_F2 LINE L1 5158 5970 -612 4 1373 3763 191 47 16 chr5 103385560 103386377 -49150882 + MTC-int LTR MaLR 417 1258 0 4 1373 2269 118 97 25 chr5 103386377 103386770 -49150489 + MTC LTR MaLR 1 421 0 4 1373 524 224 26 71 chr5 103388248 103388402 -49148857 - B1F1 SINE Alu 0 149 3 4 1373 435 240 341 46 chr5 103389656 103389910 -49147349 - MTD LTR MaLR 0 419 91 4 1373 497 311 41 99 chr5 103393406 103393699 -49143560 - B4 SINE B4 0 292 17 4 1373 22 0 0 0 chr5 103394145 103394167 -49143092 + AT_rich Low_complexity Low_complexity 1 22 0 4 1373 487 187 9 1 chr5 103395171 103395267 -49141992 + ORR1C1 LTR MaLR 1 101 -258 4 1373 21 71 0 0 chr5 103396033 103396075 -49141184 + AT_rich Low_complexity Low_complexity 1 42 0 4 1373 242 187 192 54 chr5 103396298 103396428 -49140831 - L1MA6 LINE L1 -5 6295 6139 4 1373 269 201 83 13 chr5 103396482 103396638 -49140621 + (CAGT)n Simple_repeat Simple_repeat 2 168 0 4 1373 229 300 0 0 chr5 103396650 103396760 -49140499 + (TCTCTG)n Simple_repeat Simple_repeat 6 115 0 4 1373 23 0 0 0 chr5 103398071 103398094 -49139165 + AT_rich Low_complexity Low_complexity 1 23 0 4 1373 488 147 30 18 chr5 103398329 103398495 -49138764 + (TAGA)n Simple_repeat Simple_repeat 4 171 0 4 1373 489 254 122 16 chr5 103402194 103402382 -49134877 + ID_B1 SINE B4 2 209 -15 4 1373 744 190 129 17 chr5 103402464 103402705 -49134554 + Lx9 LINE L1 7375 7642 -2 4 1373 395 229 124 35 chr5 103402736 103402849 -49134410 - B3A SINE B2 -75 123 1 4 1373 492 18 0 0 chr5 103403843 103403900 -49133359 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 4 1373 270 0 0 0 chr5 103403900 103403930 -49133329 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1373 214 264 0 27 chr5 103404184 103404258 -49133001 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1373 446 140 40 0 chr5 103406748 103406848 -49130411 + GA-rich Low_complexity Low_complexity 2 105 0 4 1373 383 240 28 39 chr5 103406924 103407106 -49130153 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1373 287 242 44 32 chr5 103407085 103407243 -49130016 + (TATG)n Simple_repeat Simple_repeat 3 162 0 5 1373 545 163 5 33 chr5 103407275 103407459 -49129800 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1373 342 0 0 0 chr5 103408376 103408414 -49128845 + (TC)n Simple_repeat Simple_repeat 2 39 0 5 1373 246 32 0 0 chr5 103408414 103408444 -49128815 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1373 519 183 0 0 chr5 103410164 103410295 -49126964 + CT-rich Low_complexity Low_complexity 2 132 0 5 1373 1616 211 73 3 chr5 103411040 103411421 -49125838 + Lx7 LINE L1 7025 7432 -264 5 1373 373 157 45 0 chr5 103411426 103411515 -49125744 + (TATG)n Simple_repeat Simple_repeat 3 95 0 5 1373 515 171 9 0 chr5 103411570 103411675 -49125584 + (TG)n Simple_repeat Simple_repeat 2 107 0 5 1373 417 254 24 68 chr5 103411721 103411923 -49125336 + Lx7 LINE L1 7311 7696 0 5 1373 723 273 55 62 chr5 103412353 103412642 -49124617 - B4 SINE B4 -2 290 4 5 1373 243 0 0 0 chr5 103412824 103412851 -49124408 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1373 27 29 0 0 chr5 103412943 103412977 -49124282 + AT_rich Low_complexity Low_complexity 1 34 0 5 1373 2618 58 156 0 chr5 103413028 103413374 -49123885 + MTB LTR MaLR 1 400 0 5 1373 371 196 50 40 chr5 103415384 103415485 -49121774 - B4A SINE B4 -2 290 189 5 1373 451 250 8 43 chr5 103415520 103415637 -49121622 - B4A SINE B4 -179 113 1 5 1374 476 174 120 17 chr5 103417388 103417505 -49119754 - L1MA6 LINE L1 -88 6212 6084 5 1374 24 0 0 0 chr5 103417802 103417826 -49119433 + AT_rich Low_complexity Low_complexity 1 24 0 5 1374 492 38 38 0 chr5 103419019 103419098 -49118161 + (TTTTG)n Simple_repeat Simple_repeat 2 83 0 5 1374 306 0 0 0 chr5 103419733 103419767 -49117492 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5 1374 1062 147 6 0 chr5 103419767 103419944 -49117315 + URR1B DNA MER1_type 48 225 0 5 1374 919 57 121 0 chr5 103420360 103420484 -49116775 + B1_Mus1 SINE Alu 1 139 -9 5 1374 237 228 18 0 chr5 103422121 103422178 -49115081 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1374 640 226 117 19 chr5 103422436 103422680 -49114579 + RMER20B LTR ERVK 160 425 -91 5 1374 375 266 151 81 chr5 103422901 103423073 -49114186 - B3 SINE B2 -27 189 6 5 1374 1174 252 40 0 chr5 103423344 103423642 -49113617 + Lx3C LINE L1 6665 6974 -2 5 1374 202 338 12 0 chr5 103425845 103425925 -49111334 + GA-rich Low_complexity Low_complexity 4 84 0 5 1374 222 309 0 0 chr5 103425869 103425924 -49111335 + G-rich Low_complexity Low_complexity 4 58 0 5 1374 900 238 9 50 chr5 103426716 103427009 -49110250 + RLTR11B LTR ERVK 1 279 -162 5 1374 400 92 40 0 chr5 103427401 103427477 -49109782 + L1Md_F2 LINE L1 6504 6582 0 5 1374 322 280 47 58 chr5 103427664 103427835 -49109424 - L3 LINE CR1 -348 4141 3973 5 1374 630 235 0 8 chr5 103427999 103428132 -49109127 + RSINE1 SINE B4 3 134 -31 5 1374 1070 197 46 8 chr5 103431251 103431492 -49105767 + MT2A LTR ERVL 1 250 -283 5 1374 737 224 0 6 chr5 103431508 103431665 -49105594 + MT2A LTR ERVL 309 464 -69 5 1374 260 355 85 0 chr5 103431760 103431949 -49105310 - MLT1A0 LTR MaLR -105 260 56 5 1374 540 213 4 9 chr5 103432091 103432331 -49104928 + (TG)n Simple_repeat Simple_repeat 1 238 0 5 1374 2303 92 6 15 chr5 103432462 103432792 -49104467 + ORR1A2 LTR MaLR 1 327 0 5 1374 297 357 8 0 chr5 103432867 103432996 -49104263 + RSINE1 SINE B4 14 143 -22 5 1374 271 248 54 27 chr5 103433126 103433238 -49104021 + BLACKJACK DNA AcHobo 2184 2298 -646 5 1374 21 0 0 0 chr5 103433252 103433273 -49103986 + AT_rich Low_complexity Low_complexity 1 21 0 5 1374 602 162 0 8 chr5 103433329 103433447 -49103812 + GA-rich Low_complexity Low_complexity 4 120 0 5 1374 3273 46 5 2 chr5 103433762 103434157 -49103102 + MTA_Mm LTR MaLR 1 396 0 5 1374 549 148 0 0 chr5 103434451 103434539 -49102720 + B3 SINE B2 11 98 -118 5 1374 28 48 0 0 chr5 103434555 103434597 -49102662 + AT_rich Low_complexity Low_complexity 1 42 0 5 1374 8002 60 10 0 chr5 103435738 103436800 -49100459 - L1_Mus1 LINE L1 0 6567 5497 5 1374 1305 291 73 21 chr5 103436874 103437355 -49099904 - Lx8 LINE L1 -62 7411 6906 5 1374 2186 159 108 14 chr5 103437752 103438242 -49099017 - ORR1B1-int LTR MaLR 0 1509 974 5 1374 645 292 81 60 chr5 103438227 103438693 -49098566 - ORR1B1-int LTR MaLR -769 601 121 5 1374 1171 81 0 17 chr5 103438775 103438951 -49098308 + B2_Mm2 SINE B2 2 174 -21 5 1374 36 40 0 0 chr5 103438956 103439006 -49098253 + AT_rich Low_complexity Low_complexity 1 50 0 5 1374 210 304 68 31 chr5 103439236 103439399 -49097860 - L2 LINE L2 -1867 1552 1384 5 1374 226 273 25 25 chr5 103439534 103439613 -49097646 - PB1D10 SINE Alu -33 84 6 5 1374 216 266 52 21 chr5 103439613 103439630 -49097629 - ID_B1 SINE B4 -59 165 67 5 1374 1625 169 0 7 chr5 103440743 103441035 -49096224 - RLTR11A2 LTR ERVK -12 515 226 5 1374 213 65 0 0 chr5 103441040 103441071 -49096188 + (TCTCTG)n Simple_repeat Simple_repeat 4 34 0 5 1374 1197 267 28 46 chr5 103441071 103441149 -49096110 - RLTR11A2 LTR ERVK -164 289 211 5 1374 315 0 0 0 chr5 103441149 103441184 -49096075 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1374 1197 204 16 4 chr5 103441184 103441406 -49095853 - RLTR11A2 LTR ERVK -302 225 2 5 1374 271 221 32 0 chr5 103441474 103441569 -49095690 + (TATATG)n Simple_repeat Simple_repeat 2 99 0 5 1374 503 170 6 38 chr5 103442900 103443059 -49094200 + (CA)n Simple_repeat Simple_repeat 1 154 0 5 1374 728 158 3 46 chr5 103443102 103443416 -49093843 + (CA)n Simple_repeat Simple_repeat 1 300 0 5 1374 308 94 0 36 chr5 103443416 103443471 -49093788 + HAL1-3A_ME LINE L1 1975 2027 -831 5 1374 226 239 125 0 chr5 103443694 103443801 -49093458 - MIRb SINE MIR -46 162 49 5 1374 597 270 78 89 chr5 103444050 103444209 -49093050 + B3A SINE B2 1 164 -34 5 1374 444 51 0 0 chr5 103444209 103444268 -49092991 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1374 391 270 78 89 chr5 103444268 103444299 -49092960 + B2_Mm2 SINE B2 160 188 -7 5 1374 396 0 0 0 chr5 103444654 103444698 -49092561 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1374 2276 64 21 60 chr5 103445365 103445697 -49091562 - ORR1A2 LTR MaLR -8 319 1 5 1374 1560 184 116 6 chr5 103445978 103446291 -49090968 - MTC LTR MaLR 0 421 73 5 1374 213 65 0 0 chr5 103446291 103446322 -49090937 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1374 1200 204 28 63 chr5 103446322 103446356 -49090903 - MTC LTR MaLR -333 74 35 5 1374 583 29 0 0 chr5 103446356 103446392 -49090867 - B1_Mus2 SINE Alu -8 139 70 5 1374 212 125 42 0 chr5 103446392 103446440 -49090819 + T-rich Low_complexity Low_complexity 4 53 0 5 1374 534 127 0 0 chr5 103446442 103446521 -49090738 - MTC LTR MaLR -342 79 1 5 1374 319 302 73 0 chr5 103446599 103446695 -49090564 - MLT1E2 LTR MaLR -198 429 327 5 1374 269 312 0 83 chr5 103448305 103448389 -49088870 + L2b LINE L2 3291 3367 -8 5 1374 709 272 66 54 chr5 103449405 103449646 -49087613 + B4A SINE B4 49 292 0 5 1374 662 181 7 0 chr5 103449646 103449795 -49087464 + (CA)n Simple_repeat Simple_repeat 1 150 0 5 1374 523 276 0 0 chr5 103450039 103450155 -49087104 - Tigger5 DNA MER2_type 0 2406 2291 5 1374 627 51 0 0 chr5 103450300 103450379 -49086880 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 1374 333 297 40 48 chr5 103451969 103452093 -49085166 + MLT1J1 LTR MaLR 75 197 -247 5 1374 273 80 80 0 chr5 103452327 103452402 -49084857 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 5 1374 215 140 60 0 chr5 103452423 103452473 -49084786 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 5 1374 243 0 0 0 chr5 103452477 103452504 -49084755 + (CATA)n Simple_repeat Simple_repeat 2 28 0 5 1374 870 55 54 12 chr5 103452504 103452671 -49084588 + (TAGA)n Simple_repeat Simple_repeat 4 177 0 5 1374 1427 242 61 39 chr5 103453164 103453525 -49083734 + MTD LTR MaLR 47 415 -4 5 1374 489 309 100 128 chr5 103453535 103453995 -49083264 + L1MA4 LINE L1 4760 5206 -937 5 1374 259 256 144 25 chr5 103454028 103454188 -49083071 + L1M4 LINE L1 5260 5438 -746 5 1374 308 246 68 0 chr5 103454209 103454328 -49082931 + RSINE1 SINE B4 79 274 -18 5 1374 292 241 0 0 chr5 103454378 103454436 -49082823 + B4 SINE B4 235 292 0 5 1374 213 132 0 0 chr5 103454446 103454484 -49082775 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1374 840 273 96 33 chr5 103454521 103454919 -49082340 + L1MA4 LINE L1 5485 5907 -393 5 1374 527 212 176 19 chr5 103456279 103456454 -49080805 + MTEb LTR MaLR 155 379 0 5 1374 1531 224 62 3 chr5 103456753 103457111 -49080148 + MT2A LTR ERVL 1 379 -154 5 1374 228 143 24 0 chr5 103457705 103457747 -49079512 + MT2A LTR ERVL 488 530 -3 5 1374 22 0 0 0 chr5 103460246 103460268 -49076991 + AT_rich Low_complexity Low_complexity 1 22 0 5 1374 218 107 51 39 chr5 103461144 103461222 -49076037 + T-rich Low_complexity Low_complexity 1 79 0 5 1374 748 201 71 14 chr5 103461222 103461363 -49075896 - B1_Mur2 SINE Alu 0 149 1 5 1374 367 209 19 0 chr5 103461544 103461649 -49075610 + (TA)n Simple_repeat Simple_repeat 2 108 0 5 1374 986 224 32 11 chr5 103463991 103464176 -49073083 - B3 SINE B2 -3 213 25 5 1374 620 308 206 35 chr5 103464205 103464716 -49072543 - MLT1E2 LTR MaLR -13 614 17 5 1374 279 0 0 0 chr5 103464869 103464900 -49072359 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1374 3168 146 6 8 chr5 103464939 103465451 -49071808 - RLTR17 LTR ERVK -84 608 98 5 1374 238 380 9 0 chr5 103465534 103465642 -49071617 + Charlie7 DNA MER1_type 2061 2169 -443 5 1374 254 203 0 15 chr5 103465935 103466000 -49071259 + A-rich Low_complexity Low_complexity 4 67 0 5 1374 28 48 0 0 chr5 103466069 103466111 -49071148 + AT_rich Low_complexity Low_complexity 1 42 0 5 1374 28 86 0 0 chr5 103466167 103466237 -49071022 + AT_rich Low_complexity Low_complexity 1 70 0 5 1374 471 113 0 0 chr5 103466537 103466608 -49070651 + (GA)n Simple_repeat Simple_repeat 1 71 0 5 1374 402 276 40 10 chr5 103466608 103466707 -49070552 - B3A SINE B2 -14 184 83 5 1374 1928 202 32 20 chr5 103466778 103467186 -49070073 - MTD LTR MaLR -4 415 3 5 1374 2892 284 68 29 chr5 103470579 103471688 -49065571 - Lx8 LINE L1 -11 7462 6310 5 1374 633 146 0 0 chr5 103472008 103472159 -49065100 + (CAGA)n Simple_repeat Simple_repeat 4 154 0 5 1374 204 189 19 19 chr5 103472901 103472955 -49064304 + T-rich Low_complexity Low_complexity 2 55 0 5 1374 232 178 22 0 chr5 103473040 103473085 -49064174 - L4 LINE RTE -5 2024 1979 6 1374 1660 201 190 24 chr5 103473606 103474059 -49063200 + RMER19B LTR ERVK 375 902 0 6 1374 32 0 0 0 chr5 103474068 103474100 -49063159 + AT_rich Low_complexity Low_complexity 1 32 0 6 1374 199 146 24 0 chr5 103474446 103474487 -49062772 - L2c LINE L2 -1 3386 3345 6 1374 211 309 78 43 chr5 103475296 103475411 -49061848 + MIRb SINE MIR 88 206 -62 6 1374 293 358 211 0 chr5 103475622 103475745 -49061514 + RSINE1 SINE B4 3 151 -14 6 1374 378 0 0 0 chr5 103475754 103475796 -49061463 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1374 281 370 23 16 chr5 103476793 103476922 -49060337 - B1F1 SINE Alu -8 141 12 6 1374 285 276 26 26 chr5 103476961 103477039 -49060220 + ID4_ SINE ID 2 79 -4 6 1374 945 276 45 48 chr5 103478192 103478402 -49058857 + MTEb LTR MaLR 1 208 -171 6 1374 348 43 0 0 chr5 103478402 103478448 -49058811 + (TC)n Simple_repeat Simple_repeat 2 47 0 6 1374 945 276 45 48 chr5 103478448 103478546 -49058713 + MTEb LTR MaLR 209 307 -72 6 1374 1889 300 138 27 chr5 103478527 103479415 -49057844 + MTE-int LTR MaLR 131 1116 -464 6 1374 416 305 56 43 chr5 103479405 103479566 -49057693 - MTE-int LTR MaLR -302 1278 1116 6 1374 376 238 78 16 chr5 103479706 103479834 -49057425 + L1MA6 LINE L1 6165 6300 0 6 1374 342 275 21 43 chr5 103479843 103479964 -49057295 + B3A SINE B2 2 127 -89 6 1374 3476 36 8 8 chr5 103480084 103480478 -49056781 - MTA_Mm LTR MaLR -2 394 1 6 1374 304 224 44 61 chr5 103480578 103480692 -49056567 - L1MA7 LINE L1 0 6291 6180 6 1374 502 287 100 20 chr5 103480919 103481168 -49056091 - B4 SINE B4 -19 273 5 6 1374 3697 18 5 0 chr5 103481528 103481922 -49055337 + MTA_Mm LTR MaLR 1 396 0 6 1374 450 0 0 0 chr5 103482277 103482327 -49054932 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1374 348 312 44 9 chr5 103483630 103483743 -49053516 - MER63A DNA AcHobo -85 125 9 6 1374 212 77 0 25 chr5 103484832 103484872 -49052387 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1374 383 313 165 43 chr5 103485391 103485718 -49051541 - L2 LINE L2 -588 2831 2465 6 1374 361 252 39 23 chr5 103485718 103485823 -49051436 - PB1D10 SINE Alu 0 127 7 6 1374 191 329 27 14 chr5 103485853 103485927 -49051332 - L2 LINE L2 -977 2442 2368 6 1374 292 287 33 63 chr5 103486068 103486224 -49051035 - MIR SINE MIR -67 201 59 6 1374 34 0 0 0 chr5 103487193 103487227 -49050032 + AT_rich Low_complexity Low_complexity 1 34 0 6 1374 22 0 0 0 chr5 103487551 103487573 -49049686 + AT_rich Low_complexity Low_complexity 1 22 0 6 1374 4473 196 30 24 chr5 103487624 103488587 -49048672 + RLTR22_Mur LTR ERVK 1 969 -879 6 1374 783 69 0 0 chr5 103488587 103488689 -49048570 + B1_Mm SINE Alu 38 139 -8 6 1374 1216 189 19 30 chr5 103488908 103489170 -49048089 + RLTR22_Mur LTR ERVK 1590 1848 0 6 1374 212 331 53 61 chr5 103489452 103489584 -49047675 + L3 LINE CR1 3418 3548 -941 6 1374 21 57 0 0 chr5 103489886 103489921 -49047338 + AT_rich Low_complexity Low_complexity 1 35 0 6 1374 280 329 19 45 chr5 103490217 103490373 -49046886 + L1MEd LINE L1 21 172 -5964 6 1374 231 282 47 0 chr5 103490522 103490607 -49046652 + L1MEd LINE L1 1622 1710 -4456 6 1374 826 357 65 25 chr5 103490960 103491440 -49045819 + LTR40a LTR ERVL 11 509 -10 6 1374 325 278 121 59 chr5 103491596 103491852 -49045407 + L1MEd LINE L1 5115 5386 -760 6 1374 365 270 84 13 chr5 103492905 103493059 -49044200 + RMER15 LTR ERVL 382 546 -29 6 1374 218 292 0 0 chr5 103493059 103493107 -49044152 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1374 239 328 142 19 chr5 103493239 103493444 -49043815 - L1MEc LINE L1 -4290 2110 1881 6 1374 598 319 77 10 chr5 103495013 103495222 -49042037 + MER58A DNA MER1_type 1 223 -1 6 1374 1088 91 14 20 chr5 103495336 103495482 -49041777 + B1_Mus1 SINE Alu 3 147 -1 6 1374 206 32 0 31 chr5 103495483 103495515 -49041744 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 6 1374 1875 148 22 59 chr5 103495563 103495886 -49041373 - Lx4A LINE L1 0 7058 6748 6 1374 229 355 56 91 chr5 103495955 103496187 -49041072 - RMER21B LTR ERV1 -19 823 600 6 1374 711 221 0 0 chr5 103496389 103496516 -49040743 + B3 SINE B2 2 128 -88 6 1374 21 36 0 0 chr5 103496538 103496566 -49040693 + AT_rich Low_complexity Low_complexity 1 28 0 6 1374 1696 192 80 0 chr5 103497331 103497680 -49039579 - ORR1C2 LTR MaLR -7 377 1 6 1374 673 283 65 50 chr5 103497755 103498494 -49038765 - L1M2 LINE L1 -3757 3088 2346 6 1374 697 275 117 37 chr5 103498494 103499044 -49038215 + L1MA8 LINE L1 4842 5443 -848 6 1374 510 316 13 10 chr5 103499118 103499373 -49037886 - L1M2 LINE L1 -785 5095 4837 6 1374 263 233 88 47 chr5 103499440 103499611 -49037648 + L1MA8 LINE L1 6062 6239 -52 6 1374 223 263 18 0 chr5 103499655 103499717 -49037542 + PB1D9 SINE Alu 52 117 -3 6 1374 270 200 0 0 chr5 103499725 103499780 -49037479 + L1MA6 LINE L1 6242 6296 -4 6 1374 1185 206 90 27 chr5 103500169 103500468 -49036791 - MTD LTR MaLR 0 419 102 1 1374 495 145 0 0 chr5 103500764 103500847 -49036412 + (TG)n Simple_repeat Simple_repeat 2 84 0 2 1374 186 71 0 0 chr5 103502119 103502147 -49035112 + (GGTTG)n Simple_repeat Simple_repeat 1 28 0 3 1374 500 287 122 31 chr5 103503303 103503558 -49033701 + B4A SINE B4 1 278 -14 4 1374 293 170 49 20 chr5 103503683 103503785 -49033474 + (TCTG)n Simple_repeat Simple_repeat 3 107 0 5 1374 218 220 0 17 chr5 103503788 103503848 -49033411 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1374 424 271 69 115 chr5 103503871 103504159 -49033100 - B4A SINE B4 -16 276 2 7 1374 210 71 0 0 chr5 103505111 103505139 -49032120 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1374 298 246 90 33 chr5 103505467 103505589 -49031670 + L1MA6 LINE L1 6115 6243 -57 9 1374 1290 54 0 0 chr5 103505621 103505768 -49031491 - B1_Mus1 SINE Alu -1 147 1 1 1374 411 317 55 21 chr5 103505826 103505971 -49031288 - B3A SINE B2 -7 191 42 1 1374 861 320 113 17 chr5 103506039 103506545 -49030714 + MER68 LTR ERVL 1 607 0 1 1374 320 286 54 31 chr5 103506984 103507007 -49030252 - B1_Mus1 SINE Alu -15 133 1 1 1374 427 295 0 19 chr5 103507007 103507114 -49030145 - ID_B1 SINE B4 -38 186 82 1 1374 331 333 35 7 chr5 103507474 103507619 -49029640 + L1MA6 LINE L1 6135 6283 -17 1 1374 455 397 65 26 chr5 103508741 103509051 -49028208 - MER74B LTR ERVL -90 532 211 1 1374 405 0 0 0 chr5 103509117 103509162 -49028097 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1374 2914 143 106 54 chr5 103509202 103509242 -49028017 + RMER4B LTR ERVK 1 44 -541 1 1374 1278 61 0 0 chr5 103509242 103509389 -49027870 + B1_Mus2 SINE Alu 1 147 0 1 1374 2914 143 106 54 chr5 103509389 103509904 -49027355 + RMER4B LTR ERVK 45 585 0 1 1374 195 49 0 68 chr5 103509916 103509960 -49027299 + (CTAA)n Simple_repeat Simple_repeat 1 41 0 2 1374 198 0 0 0 chr5 103511791 103511813 -49025446 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 2 1374 1221 106 0 0 chr5 103511813 103511993 -49025266 + (GGGA)n Simple_repeat Simple_repeat 1 180 0 2 1374 5300 165 111 140 chr5 103512139 103512966 -49024293 + L1_Mur2 LINE L1 4304 5222 -655 2 1374 1048 159 58 5 chr5 103512966 103513155 -49024104 + B3 SINE B2 18 216 0 2 1374 5300 165 111 140 chr5 103513155 103513622 -49023637 + L1_Mur2 LINE L1 5223 5743 -134 2 1374 1237 235 11 203 chr5 103513619 103514088 -49023171 + Lx6 LINE L1 6255 6894 -566 2 1374 801 329 58 92 chr5 103514380 103514902 -49022357 + MER44B DNA MER2_type 37 540 -10 2 1374 369 95 0 0 chr5 103515177 103515240 -49022019 + (TTGG)n Simple_repeat Simple_repeat 1 63 0 2 1374 251 296 143 0 chr5 103515552 103515669 -49021590 + MIRc SINE MIR 54 187 -81 2 1374 548 233 0 70 chr5 103515782 103515911 -49021348 + PB1D7 SINE Alu 1 120 0 2 1374 963 244 33 9 chr5 103516259 103516470 -49020789 - B3 SINE B2 0 216 1 3 1374 813 329 39 81 chr5 103517581 103518090 -49019169 - MLT1D LTR MaLR -15 490 3 3 1374 295 239 42 0 chr5 103518613 103518684 -49018575 - PB1D9 SINE Alu 0 120 47 3 1374 2218 156 15 53 chr5 103519078 103519471 -49017788 + ORR1C1 LTR MaLR 1 378 0 3 1374 229 299 176 76 chr5 103520760 103520919 -49016340 - MIR SINE MIR -66 202 31 3 1374 1030 167 131 5 chr5 103522340 103522539 -49014720 + URR1A DNA MER1_type 1 224 -2 3 1374 515 16 16 0 chr5 103523230 103523294 -49013965 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1374 180 163 0 0 chr5 103523296 103523339 -49013920 + GA-rich Low_complexity Low_complexity 2 44 0 3 1374 315 71 0 0 chr5 103523590 103523632 -49013627 + (TCTG)n Simple_repeat Simple_repeat 4 45 0 3 1374 182 318 30 0 chr5 103524254 103524320 -49012939 - L3b LINE CR1 -86 396 329 3 1374 673 235 87 7 chr5 103525808 103525958 -49011301 + B3 SINE B2 1 162 -54 4 1374 255 29 29 0 chr5 103527080 103527115 -49010144 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1374 295 83 33 0 chr5 103527115 103527175 -49010084 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1374 402 121 0 0 chr5 103527175 103527241 -49010018 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1374 180 176 0 0 chr5 103528081 103528115 -49009144 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1374 661 175 227 0 chr5 103528625 103528779 -49008480 + B3 SINE B2 1 189 -27 4 1374 196 353 50 25 chr5 103529815 103529934 -49007325 - MIR SINE MIR -116 146 25 4 1374 465 301 96 10 chr5 103531093 103531301 -49005958 - LTR87 LTR ERVL? -3 621 396 4 1374 187 196 21 21 chr5 103531718 103531765 -49005494 + L2c LINE L2 3341 3387 0 4 1374 258 333 172 65 chr5 103531909 103532124 -49005135 + LTR33 LTR ERVL 27 264 -251 4 1374 271 246 42 28 chr5 103532216 103532287 -49004972 - PB1D10 SINE Alu -2 115 44 5 1374 1672 170 102 21 chr5 103532727 103533077 -49004182 + MTD LTR MaLR 42 405 -14 5 1374 4674 132 45 4 chr5 103533582 103534296 -49002963 + Lx LINE L1 5898 6640 -14 5 1374 183 80 0 0 chr5 103534362 103534387 -49002872 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 5 1374 420 20 0 0 chr5 103534738 103534787 -49002472 + (T)n Simple_repeat Simple_repeat 1 49 0 5 1374 284 327 38 32 chr5 103535392 103535550 -49001709 + MIR SINE MIR 70 228 -34 5 1374 311 277 25 67 chr5 103536019 103536139 -49001120 - L1M2 LINE L1 -599 5692 5578 5 1374 1808 337 57 23 chr5 103536293 103537217 -49000042 - Lx8 LINE L1 -29 7444 6489 5 1374 1075 264 61 39 chr5 103537275 103537634 -48999625 + L1_Mur3 LINE L1 4789 5155 -725 5 1374 186 133 0 0 chr5 103537736 103537766 -48999493 + (TATG)n Simple_repeat Simple_repeat 1 30 0 5 1374 361 270 106 33 chr5 103537793 103537973 -48999286 + Lx8 LINE L1 6189 6381 -1092 6 1374 208 220 0 0 chr5 103540329 103540379 -48996880 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 6 1374 351 198 32 24 chr5 103540996 103541120 -48996139 - RMER17A LTR ERVK -287 464 340 6 1374 1718 67 13 4 chr5 103543028 103543254 -48994005 + L1_Mus3 LINE L1 6405 6632 -6 6 1374 386 231 0 0 chr5 103543389 103543467 -48993792 - Lx6 LINE L1 -6 7454 7377 6 1374 1033 266 104 32 chr5 103544659 103544997 -48992262 + MTEb LTR MaLR 5 366 -13 6 1374 22 0 0 0 chr5 103545287 103545309 -48991950 + AT_rich Low_complexity Low_complexity 1 22 0 6 1374 3234 93 7 9 chr5 103546200 103546635 -48990624 + L1_Mus3 LINE L1 6203 6636 -2 6 1375 237 222 0 0 chr5 103547995 103548058 -48989201 + CT-rich Low_complexity Low_complexity 1 63 0 6 1375 301 314 110 35 chr5 103548067 103548212 -48989047 - HAL1-3A_ME LINE L1 -419 2439 2284 6 1375 207 323 0 16 chr5 103548861 103548924 -48988335 + L2a LINE L2 3365 3426 0 7 1375 326 273 4 0 chr5 103549451 103549698 -48987561 + (CA)n Simple_repeat Simple_repeat 1 248 0 7 1375 248 337 182 32 chr5 103549793 103550106 -48987153 - L2b LINE L2 -33 3393 3037 7 1375 689 186 6 3 chr5 103550318 103550667 -48986592 + (TG)n Simple_repeat Simple_repeat 1 350 0 7 1375 187 259 12 12 chr5 103550955 103551041 -48986218 + GA-rich Low_complexity Low_complexity 3 88 0 7 1375 25 31 0 0 chr5 103551655 103551687 -48985572 + AT_rich Low_complexity Low_complexity 1 32 0 7 1375 42170 5 0 0 chr5 103551758 103558131 -48979128 - L1Md_A LINE L1 0 6582 209 7 1375 421 289 133 8 chr5 103558745 103558986 -48978273 + L1MC4a LINE L1 7408 7678 -204 7 1375 411 21 0 0 chr5 103559852 103559900 -48977359 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1375 2911 24 24 0 chr5 103560654 103560992 -48976267 - ORR1A0 LTR MaLR 0 346 1 7 1375 320 353 16 21 chr5 103561192 103561386 -48975873 + MER67C LTR ERV1 89 281 -430 8 1375 514 307 72 28 chr5 103563781 103564032 -48973227 - MLT2B1 LTR ERVL -61 459 198 8 1375 2839 41 0 9 chr5 103564157 103564502 -48972757 + L1Md_F2 LINE L1 6226 6567 -15 8 1375 24 0 0 0 chr5 103568163 103568187 -48969072 + AT_rich Low_complexity Low_complexity 1 24 0 8 1375 773 264 154 4 chr5 103568701 103568948 -48968311 + B4A SINE B4 4 287 -5 8 1375 198 349 58 74 chr5 103569280 103569469 -48967790 + L2a LINE L2 3239 3424 -2 8 1375 231 36 0 0 chr5 103569490 103569518 -48967741 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 8 1375 501 301 91 91 chr5 103570081 103570600 -48966659 + Tigger10 DNA Tigger 276 794 -1049 8 1375 220 238 75 56 chr5 103570992 103571095 -48966164 - PB1D9 SINE Alu -12 108 1 8 1375 284 270 0 82 chr5 103571445 103571542 -48965717 + RSINE1 SINE B4 4 92 -73 8 1375 405 56 0 66 chr5 103571712 103571788 -48965471 + (TTCTCC)n Simple_repeat Simple_repeat 3 73 0 9 1375 977 153 6 0 chr5 103571796 103571972 -48965287 + CT-rich Low_complexity Low_complexity 2 178 0 9 1375 24 67 0 0 chr5 103571988 103572033 -48965226 + AT_rich Low_complexity Low_complexity 1 45 0 9 1375 976 78 35 0 chr5 103572043 103572184 -48965075 + B1_Mus2 SINE Alu 2 147 0 9 1375 37097 45 10 0 chr5 103573139 103578614 -48958645 + L1Md_T LINE L1 98 5586 -297 9 1375 8448 38 3 0 chr5 103578614 103579607 -48957652 + L1Md_T LINE L1 5587 6582 0 9 1375 291 289 115 55 chr5 103579617 103580035 -48957224 + L1M2 LINE L1 2176 2618 -4231 9 1375 1567 254 101 47 chr5 103580734 103580922 -48956337 + RCHARR1 DNA MER1_type 295 496 -478 9 1375 698 227 14 28 chr5 103580922 103581067 -48956192 + B1_Mur2 SINE Alu 2 144 -5 9 1375 1567 254 101 47 chr5 103581067 103581523 -48955736 + RCHARR1 DNA MER1_type 497 974 0 9 1375 210 37 0 0 chr5 103581755 103581782 -48955477 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1375 2939 270 65 42 chr5 103582045 103583131 -48954128 - Lx7 LINE L1 -994 6702 5592 9 1375 320 313 30 13 chr5 103583537 103583674 -48953585 - B1F SINE Alu -5 144 10 1 1375 208 241 123 25 chr5 103583724 103583805 -48953454 + L2a LINE L2 3288 3376 -50 1 1375 21 0 0 0 chr5 103584366 103584387 -48952872 + AT_rich Low_complexity Low_complexity 1 21 0 1 1375 351 236 84 30 chr5 103584483 103584614 -48952645 - Lx9 LINE L1 -550 7094 6957 1 1375 1222 179 29 8 chr5 103584609 103584851 -48952408 + Lx9 LINE L1 7077 7323 -321 1 1375 292 214 67 0 chr5 103584856 103584945 -48952314 + Lx9 LINE L1 7550 7644 0 1 1375 758 158 0 0 chr5 103585322 103585449 -48951810 - B1_Mur4 SINE Alu -23 127 1 1 1375 1766 197 147 45 chr5 103586047 103586558 -48950701 + RMER2 LTR ERV1 1 563 -4 1 1375 457 311 94 25 chr5 103587356 103587600 -48949659 + MLT1A0 LTR MaLR 103 363 -2 1 1375 1210 68 0 0 chr5 103588058 103588206 -48949053 - B1_Mus1 SINE Alu 0 148 1 1 1375 323 306 107 21 chr5 103588811 103588998 -48948261 + Lx8 LINE L1 6081 6283 -1190 1 1375 610 300 46 27 chr5 103589010 103589229 -48948030 + B4A SINE B4 1 223 -69 1 1375 263 284 0 75 chr5 103589649 103589729 -48947530 - L2a LINE L2 -10 3416 3343 1 1375 287 25 0 24 chr5 103589803 103589844 -48947415 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1375 1584 209 58 9 chr5 103592220 103592650 -48944609 - RCHARR1 DNA MER1_type -1 973 523 1 1375 633 324 35 20 chr5 103592690 103592945 -48944314 - B4 SINE B4 -31 261 3 1 1375 465 226 19 0 chr5 103592974 103593080 -48944179 - RCHARR1 DNA MER1_type -452 522 415 1 1375 406 304 68 64 chr5 103593138 103593402 -48943857 - RCHARR1 DNA MER1_type -709 265 1 1 1375 326 347 66 43 chr5 103594511 103594722 -48942537 - Charlie1b DNA MER1_type -301 222 7 1 1375 527 120 9 0 chr5 103596955 103597063 -48940196 + (CCA)n Simple_repeat Simple_repeat 1 109 0 1 1375 1448 167 10 28 chr5 103597229 103597518 -48939741 - MTD LTR MaLR -4 415 132 1 1375 5383 259 33 76 chr5 103597522 103597824 -48939435 + Lx7 LINE L1 5502 5793 -1903 1 1375 1111 67 0 0 chr5 103597824 103597959 -48939300 + B1_Mus1 SINE Alu 1 135 -13 1 1375 384 22 0 0 chr5 103597959 103598004 -48939255 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1 1375 5383 271 55 33 chr5 103598004 103599517 -48937742 + Lx7 LINE L1 5794 7359 -337 1 1375 244 277 5 160 chr5 103599486 103599692 -48937567 + Lx7 LINE L1 7511 7684 -12 1 1375 407 219 35 17 chr5 103599706 103599822 -48937437 - MTD LTR MaLR -299 120 3 1 1375 1151 55 0 20 chr5 103600824 103600958 -48936301 + B1_Mus2 SINE Alu 1 134 -13 1 1375 229 26 53 0 chr5 103600958 103600996 -48936263 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 1 1375 1151 55 0 20 chr5 103600996 103601010 -48936249 + B1_Mus2 SINE Alu 135 146 -1 1 1375 613 209 30 116 chr5 103601171 103601427 -48935832 - Lx4B LINE L1 -4 7054 6750 1 1375 1003 267 105 0 chr5 103604458 103604791 -48932468 - ORR1D2 LTR MaLR 0 370 3 1 1375 300 253 27 0 chr5 103605822 103605897 -48931362 + Lx8 LINE L1 7394 7470 -3 1 1375 658 236 64 41 chr5 103607964 103608136 -48929123 + B3A SINE B2 12 187 -11 1 1375 184 265 133 29 chr5 103608378 103608483 -48928776 - MIRb SINE MIR 0 268 153 1 1375 1172 225 30 0 chr5 103608981 103609217 -48928042 - Lx6 LINE L1 -11 7449 7207 1 1375 428 96 24 0 chr5 103609267 103609350 -48927909 + (TCTCTG)n Simple_repeat Simple_repeat 2 86 0 1 1375 538 131 20 0 chr5 103609421 103609520 -48927739 + GA-rich Low_complexity Low_complexity 2 102 0 1 1375 219 286 138 32 chr5 103609718 103609841 -48927418 - MIR SINE MIR -112 150 15 1 1375 949 63 0 0 chr5 103610090 103610216 -48927043 + L1_Mus2 LINE L1 6440 6565 -1 1 1375 34 55 0 0 chr5 103610276 103610331 -48926928 + AT_rich Low_complexity Low_complexity 1 55 0 1 1375 440 342 105 33 chr5 103612107 103612442 -48924817 + MLT1A0 LTR MaLR 6 365 0 1 1375 511 319 37 6 chr5 103614185 103614346 -48922913 + B3A SINE B2 15 180 -18 1 1375 273 54 0 0 chr5 103614364 103614387 -48922872 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1375 1122 68 0 7 chr5 103614387 103614535 -48922724 - B1_Mus2 SINE Alu 0 147 1 1 1375 273 54 0 0 chr5 103614535 103614548 -48922711 + (T)n Simple_repeat Simple_repeat 1 13 0 1 1375 367 310 17 0 chr5 103614688 103614804 -48922455 - PB1D7 SINE Alu 0 120 3 1 1375 1852 157 25 14 chr5 103616238 103616593 -48920666 + ORR1B2 LTR MaLR 1 359 -8 1 1375 195 257 162 34 chr5 103617205 103617322 -48919937 - MIRb SINE MIR -29 239 108 1 1375 531 233 167 11 chr5 103617324 103617498 -48919761 + B3 SINE B2 3 203 -13 1 1375 185 128 0 21 chr5 103617506 103617554 -48919705 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1375 301 309 80 30 chr5 103617613 103617713 -48919546 + RSINE1 SINE B4 44 148 -17 1 1375 1337 68 62 0 chr5 103617788 103617964 -48919295 - B2_Mm2 SINE B2 -7 188 2 1 1375 237 83 0 0 chr5 103617967 103618003 -48919256 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1 1375 1099 192 9 5 chr5 103619445 103619660 -48917599 + URR1B DNA MER1_type 1 216 -9 1 1375 2142 118 204 21 chr5 103619721 103620252 -48917007 + RMER17C-int LTR ERVK 2611 3238 0 1 1375 756 189 26 71 chr5 103620252 103620515 -48916744 + RMER17C LTR ERVK 1 454 -355 1 1375 406 239 197 44 chr5 103621455 103621704 -48915555 + Lx8 LINE L1 7187 7473 0 1 1375 215 194 0 31 chr5 103621984 103622048 -48915211 + (CATA)n Simple_repeat Simple_repeat 2 63 0 1 1375 619 229 6 11 chr5 103622069 103622250 -48915009 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1375 183 217 0 0 chr5 103622270 103622330 -48914929 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1375 420 30 30 15 chr5 103623338 103623405 -48913854 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1375 478 304 105 37 chr5 103624193 103624545 -48912714 + Charlie1b DNA MER1_type 115 490 -33 1 1375 545 319 6 6 chr5 103626126 103626290 -48910969 + RSINE1 SINE B4 2 165 0 1 1375 483 216 0 0 chr5 103626298 103626465 -48910794 + (CA)n Simple_repeat Simple_repeat 1 167 0 1 1375 396 265 44 71 chr5 103627178 103627300 -48909959 - MLT1A0 LTR MaLR -173 192 70 1 1375 3282 133 146 134 chr5 103627300 103628195 -48909064 + RMER17A2 LTR ERVK 1 906 0 1 1375 396 265 44 71 chr5 103628195 103628247 -48909012 - MLT1A0 LTR MaLR -296 69 23 1 1375 842 166 22 0 chr5 103628247 103628386 -48908873 + B1_Mur3 SINE Alu 1 142 -7 1 1375 185 86 57 0 chr5 103628396 103628431 -48908828 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 1 1375 265 324 39 0 chr5 103630040 103630142 -48907117 - MER5A1 DNA MER1_type 0 166 61 1 1375 607 367 31 16 chr5 103630530 103630851 -48906408 - MER47B DNA MER2_type -33 385 60 1 1375 357 139 279 0 chr5 103630853 103630975 -48906284 - Lx9 LINE L1 -13 7631 7476 1 1375 869 198 11 6 chr5 103631006 103631189 -48906070 - Lx9 LINE L1 -132 7512 7329 1 1375 195 100 0 0 chr5 103631742 103631772 -48905487 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1375 544 311 81 42 chr5 103632490 103632799 -48904460 + L1M5 LINE L1 5328 5648 -592 1 1375 445 32 32 0 chr5 103639540 103639603 -48897656 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 1375 234 91 0 0 chr5 103641066 103641099 -48896160 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1375 279 0 0 0 chr5 103642070 103642101 -48895158 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1375 1236 48 0 0 chr5 103642101 103642248 -48895011 - B1_Mm SINE Alu 0 147 1 1 1375 1237 289 73 15 chr5 103642319 103642957 -48894302 + L1ME2 LINE L1 5118 5800 -362 1 1375 263 346 32 44 chr5 103643750 103643998 -48893261 + L1ME2 LINE L1 5907 6151 -13 1 1375 4022 128 66 6 chr5 103644077 103644380 -48892879 - RMER6C LTR ERVK 0 690 370 1 1375 992 17 0 16 chr5 103644380 103644503 -48892756 + (TCTCCC)n Simple_repeat Simple_repeat 1 121 0 1 1375 4022 128 66 6 chr5 103644503 103644850 -48892409 - RMER6C LTR ERVK -321 369 1 1 1375 487 258 66 7 chr5 103644910 103645062 -48892197 + RLTR18B LTR ERVK 1 161 -351 1 1375 1419 167 18 36 chr5 103645077 103645351 -48891908 + MT2B LTR ERVL 1 269 -332 1 1375 7276 126 30 25 chr5 103645155 103646448 -48890811 + ORR1A3-int LTR MaLR 659 1963 0 1 1375 2529 80 6 0 chr5 103646454 103646779 -48890480 + ORR1A2 LTR MaLR 1 327 0 1 1375 574 266 232 50 chr5 103646779 103647155 -48890104 + RLTR18B LTR ERVK 167 613 -3 1 1375 284 269 0 36 chr5 103647393 103647505 -48889754 + B4A SINE B4 139 246 -46 1 1375 744 189 8 13 chr5 103647505 103647733 -48889526 + GA-rich Low_complexity Low_complexity 1 227 0 1 1375 231 262 0 0 chr5 103647802 103647882 -48889377 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 1375 32 75 0 0 chr5 103648742 103648809 -48888450 + AT_rich Low_complexity Low_complexity 1 67 0 1 1375 468 0 0 0 chr5 103648947 103648999 -48888260 + (TTA)n Simple_repeat Simple_repeat 3 54 0 1 1375 1226 38 0 12 chr5 103648999 103649159 -48888100 - B2_Mm1a SINE B2 -35 158 1 1 1375 237 284 182 86 chr5 103649166 103649386 -48887873 - L1MC2 LINE L1 -21 6323 6083 1 1375 180 0 0 0 chr5 103649551 103649571 -48887688 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1375 288 0 0 0 chr5 103650686 103650718 -48886541 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1375 324 0 0 0 chr5 103650718 103650754 -48886505 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1375 515 229 62 33 chr5 103651371 103651561 -48885698 + Lx8 LINE L1 5661 5872 -1136 1 1375 1488 49 0 21 chr5 103651805 103651994 -48885265 + B2_Mm2 SINE B2 1 185 -10 1 1375 2050 250 85 26 chr5 103652084 103652708 -48884551 + Lx8 LINE L1 6306 6966 -507 1 1375 1254 267 108 37 chr5 103652720 103653128 -48884131 + Lx8 LINE L1 7034 7470 -3 1 1375 1054 182 136 26 chr5 103653777 103654042 -48883217 + RMER19A LTR ERVK 1 294 -443 1 1375 505 317 65 41 chr5 103654249 103654600 -48882659 - RLTR26 LTR ERVK -242 400 12 1 1375 1155 218 23 56 chr5 103654612 103655018 -48882241 + RMER19A LTR ERVK 242 737 0 1 1375 658 275 13 0 chr5 103656461 103656610 -48880649 + RSINE1 SINE B4 4 154 -11 1 1375 838 164 0 0 chr5 103657538 103657672 -48879587 + B1_Mus1 SINE Alu 3 136 -12 1 1375 203 0 0 36 chr5 103657673 103657701 -48879558 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1375 207 0 0 0 chr5 103658357 103658380 -48878879 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 1 1375 2296 97 159 60 chr5 103658514 103658966 -48878293 + Lx4A LINE L1 6545 7041 -17 1 1375 239 21 20 59 chr5 103659316 103659367 -48877892 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1375 707 257 5 32 chr5 103659375 103659564 -48877695 - MTE2b LTR MaLR -37 342 159 1 1375 2422 167 32 34 chr5 103659564 103660059 -48877200 - RLTR19 LTR ERVK 0 499 6 1 1375 448 238 97 14 chr5 103660056 103660201 -48877058 - MTE2b LTR MaLR -208 171 15 1 1375 253 220 68 0 chr5 103660466 103660525 -48876734 + polypurine Low_complexity Low_complexity 5 67 0 1 1375 1038 173 0 0 chr5 103661101 103661286 -48875973 + ORR1B1 LTR MaLR 3 187 -207 1 1375 230 386 44 0 chr5 103662343 103662457 -48874802 + LTR33A LTR ERVL 102 220 -300 2 1375 29636 63 23 9 chr5 103663553 103669537 -48867722 - L1Md_F2 LINE L1 0 6582 510 2 1375 1807 122 0 0 chr5 103669535 103669790 -48867469 - L1Md_F2 LINE L1 -5988 628 374 2 1375 356 289 112 34 chr5 103669811 103669990 -48867269 + MER2 DNA MER2_type 85 277 -68 2 1375 3172 62 12 0 chr5 103670605 103671021 -48866238 - BGLII LTR ERVK 0 421 1 2 1375 600 288 245 13 chr5 103671459 103671769 -48865490 - MTD LTR MaLR -25 394 13 2 1375 288 247 10 40 chr5 103671754 103671855 -48865404 - MER34 LTR ERV1 -75 467 370 2 1375 723 303 97 20 chr5 103672481 103672831 -48864428 + MTEa LTR MaLR 1 377 -2 2 1375 598 280 85 43 chr5 103673668 103673903 -48863356 + MLT1B LTR MaLR 125 369 -21 2 1375 2005 157 139 2 chr5 103674411 103674526 -48862733 - Lx9 LINE L1 -8 7636 7517 2 1375 324 0 0 0 chr5 103674526 103674562 -48862697 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1375 2005 157 139 2 chr5 103674562 103674848 -48862411 - Lx9 LINE L1 -128 7516 7181 2 1375 938 172 20 15 chr5 103674866 103675067 -48862192 + L1_Rod LINE L1 4498 4699 -1148 2 1375 376 274 30 0 chr5 103675067 103675193 -48862066 + B1_Mur4 SINE Alu 13 145 -5 2 1375 180 111 0 0 chr5 103675227 103675254 -48862005 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2 1375 752 212 97 23 chr5 103675254 103675471 -48861788 + L1_Rod LINE L1 4748 4980 -867 2 1375 376 121 0 0 chr5 103675466 103675524 -48861735 + L1_Mur2 LINE L1 4351 4408 -1469 2 1375 4387 154 28 9 chr5 103675518 103676319 -48860940 + L1_Mur2 LINE L1 4620 5435 -442 2 1375 12167 129 169 23 chr5 103676311 103677670 -48859589 - L1_Mur2 LINE L1 -166 5711 4018 2 171 2355 125 3 42 chr5 103677670 103678053 -48859206 + RLTR9A LTR ERVK 1 368 0 2 1376 12167 129 169 23 chr5 103678053 103678985 -48858274 - L1_Mur2 LINE L1 -1860 4017 3084 2 1376 522 182 30 10 chr5 103678991 103679091 -48858168 - RLTR20A LTR ERVK 0 541 440 2 1376 288 70 0 0 chr5 103679105 103679148 -48858111 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 2 1376 295 327 39 0 chr5 103679276 103679380 -48857879 + PB1D10 SINE Alu 10 117 0 2 1376 447 268 96 23 chr5 103679529 103679789 -48857470 - MER20B DNA MER1_type 0 783 505 2 1376 939 59 0 36 chr5 103680219 103680359 -48856900 + B1_Mus1 SINE Alu 14 148 0 2 1376 1134 99 0 0 chr5 103680521 103680683 -48856576 + B2_Mm2 SINE B2 2 163 -32 2 1376 3152 66 5 2 chr5 103681064 103681459 -48855800 + MTA_Mm LTR MaLR 1 396 0 2 1376 7826 66 16 70 chr5 103681459 103682619 -48854640 + MTA_Mm-int LTR MaLR 1 1098 0 2 1376 3073 76 5 5 chr5 103682619 103683015 -48854244 + MTA_Mm LTR MaLR 1 396 0 2 1376 186 43 0 0 chr5 103685518 103685541 -48851718 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 1376 581 72 12 0 chr5 103685559 103685642 -48851617 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 2 1376 234 219 0 0 chr5 103685834 103685898 -48851361 + (TATG)n Simple_repeat Simple_repeat 4 67 0 2 1376 395 196 19 25 chr5 103685970 103686127 -48851132 + (TG)n Simple_repeat Simple_repeat 2 157 0 2 1376 620 182 35 4 chr5 103686147 103686389 -48850870 + (TG)n Simple_repeat Simple_repeat 1 249 0 2 1376 403 236 85 16 chr5 103686456 103686585 -48850674 + Lx7 LINE L1 7559 7696 0 2 1376 21 57 0 0 chr5 103686585 103686620 -48850639 + AT_rich Low_complexity Low_complexity 1 35 0 2 1376 239 260 0 76 chr5 103686699 103686778 -48850481 + L1MC2 LINE L1 6258 6330 -14 2 1376 6738 112 41 5 chr5 103686792 103687078 -48850181 - RLTR13D4 LTR ERVK 0 1033 744 2 1376 270 0 0 0 chr5 103687078 103687108 -48850151 + (G)n Simple_repeat Simple_repeat 1 30 0 2 1376 6738 112 41 5 chr5 103687108 103687818 -48849441 - RLTR13D4 LTR ERVK -290 743 3 2 1376 4920 51 2 2 chr5 103688283 103688870 -48848389 + LTRIS_Mus LTR ERV1 1 587 0 2 1376 363 153 70 12 chr5 103688958 103689044 -48848215 - Lx9 LINE L1 -22 7622 7532 2 1376 2565 184 17 59 chr5 103689054 103689579 -48847680 - Lx9 LINE L1 -628 7016 6514 2 1376 275 306 163 28 chr5 103690571 103690823 -48846436 + B4A SINE B4 3 288 -4 2 1376 455 48 16 0 chr5 103690824 103690886 -48846373 + (GA)n Simple_repeat Simple_repeat 2 64 0 2 1376 1308 79 0 0 chr5 103690886 103691064 -48846195 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 2 1376 4962 97 20 16 chr5 103691379 103692189 -48845070 + RLTR22_Mur LTR ERVK 20 832 -1016 2 1376 359 326 64 45 chr5 103692386 103692588 -48844671 + RMER12 LTR ERVK 1117 1322 0 2 1376 1200 236 224 19 chr5 103692912 103693335 -48843924 + Lx9 LINE L1 6119 6762 -882 2 1376 221 293 0 0 chr5 103693335 103693393 -48843866 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 1376 302 301 0 11 chr5 103693393 103693568 -48843691 + (CATA)n Simple_repeat Simple_repeat 4 176 0 2 1376 1078 68 7 40 chr5 103698008 103698160 -48839099 + B1_Mus1 SINE Alu 2 148 0 2 1376 361 330 139 67 chr5 103698997 103699400 -48837859 - LTR16B2 LTR ERVL 0 462 31 2 1376 1927 169 49 30 chr5 103701577 103701944 -48835315 - ORR1D1 LTR MaLR 0 374 1 2 1376 487 298 14 28 chr5 103702183 103702328 -48834931 + ID_B1 SINE B4 82 224 0 2 1376 479 233 68 8 chr5 103702761 103702878 -48834381 - RSINE1 SINE B4 -31 134 11 2 1376 480 322 79 40 chr5 103703540 103704209 -48833050 - L1_Mur3 LINE L1 -3950 1897 1203 2 1376 277 191 9 9 chr5 103704275 103704386 -48832873 + CT-rich Low_complexity Low_complexity 2 112 0 2 1376 342 0 0 0 chr5 103704386 103704424 -48832835 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1376 474 212 115 0 chr5 103704425 103704538 -48832721 - B1_Mur3 SINE Alu -23 126 1 2 1376 3019 239 188 14 chr5 103704559 103705213 -48832046 - RMER1A Other Other -5 1025 217 2 1376 3783 117 72 32 chr5 103705213 103705935 -48831324 - RMER17A LTR ERVK 0 751 1 2 1376 3019 239 188 14 chr5 103705935 103706147 -48831112 - RMER1A Other Other -814 216 8 2 1376 1138 237 23 15 chr5 103706148 103706414 -48830845 - RMER1A Other Other -694 336 69 2 1376 735 12 0 0 chr5 103707622 103707706 -48829553 + (TA)n Simple_repeat Simple_repeat 1 84 0 2 1376 256 305 44 106 chr5 103708017 103708244 -48829015 + MLT1C LTR MaLR 86 298 -92 2 1376 254 296 158 36 chr5 103708268 103708464 -48828795 - ORR1E LTR MaLR -43 316 97 2 1376 348 187 27 0 chr5 103708709 103708784 -48828475 + MLT1C LTR MaLR 374 450 -17 2 1376 2359 119 41 5 chr5 103708991 103709379 -48827880 - BGLII_B LTR ERVK 0 441 40 2 1376 525 250 28 35 chr5 103709667 103709808 -48827451 + B1_Mur1 SINE Alu 2 141 -8 2 1376 699 176 12 6 chr5 103709847 103710007 -48827252 + GA-rich Low_complexity Low_complexity 4 164 0 2 1376 988 211 37 0 chr5 103710441 103710631 -48826628 - B3 SINE B2 -15 201 5 2 1376 225 94 0 0 chr5 103711197 103711229 -48826030 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 1376 1948 132 103 21 chr5 103711702 103712080 -48825179 + RLTR9E LTR ERVK 1 409 0 2 1376 2297 106 16 0 chr5 103712105 103712427 -48824832 + ORR1A2 LTR MaLR 1 327 0 2 1376 242 395 9 9 chr5 103713786 103713896 -48823363 - L2b LINE L2 -27 3348 3239 2 1376 471 343 23 38 chr5 103713931 103714192 -48823067 - MIR SINE MIR -4 258 2 2 1376 1778 222 58 11 chr5 103714597 103715056 -48822203 + Lx3C LINE L1 6504 7000 0 2 1376 266 0 0 29 chr5 103716254 103716289 -48820970 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2 1376 2480 103 18 44 chr5 103716289 103716676 -48820583 - Lx2A1 LINE L1 -21 6987 6611 2 1376 244 264 0 0 chr5 103716724 103716777 -48820482 + GA-rich Low_complexity Low_complexity 4 56 0 2 1376 307 262 0 36 chr5 103717642 103717725 -48819534 + B3A SINE B2 2 81 -117 2 1376 192 77 0 0 chr5 103717728 103717754 -48819505 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 2 1376 216 0 0 0 chr5 103717777 103717801 -48819458 + (ACTG)n Simple_repeat Simple_repeat 2 25 0 2 1376 540 252 22 58 chr5 103718048 103718187 -48819072 + B1_Mur2 SINE Alu 2 135 -14 2 1376 437 153 0 23 chr5 103718187 103718274 -48818985 + GA-rich Low_complexity Low_complexity 4 88 0 2 1376 858 119 52 35 chr5 103718275 103718449 -48818810 + Lx4A LINE L1 6882 7058 0 2 1376 903 87 0 0 chr5 103718962 103719088 -48818171 + (TTCC)n Simple_repeat Simple_repeat 1 126 0 2 1376 1194 48 0 7 chr5 103719765 103719913 -48817346 + B1_Mus2 SINE Alu 1 147 0 2 1376 349 280 16 48 chr5 103721219 103721343 -48815916 - B4 SINE B4 -172 120 1 2 1376 375 264 9 5 chr5 103722569 103722796 -48814463 + (CA)n Simple_repeat Simple_repeat 1 228 0 2 1376 202 222 0 0 chr5 103723441 103723477 -48813782 + T-rich Low_complexity Low_complexity 5 40 0 2 1376 264 213 11 26 chr5 103723629 103723719 -48813540 + MIRb SINE MIR 127 218 -44 2 1376 1487 132 81 8 chr5 103724281 103724541 -48812718 + Lx4A LINE L1 6778 7056 -2 2 1376 552 314 93 33 chr5 103725902 103726172 -48811087 - B4A SINE B4 -6 286 1 2 1376 375 23 0 0 chr5 103727185 103727229 -48810030 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1376 307 346 30 23 chr5 103727339 103727472 -48809787 + MERVL_2A-int LTR ERVL 3587 3720 -1947 2 1376 625 176 0 9 chr5 103727805 103727914 -48809345 - PB1D9 SINE Alu -12 108 1 2 1376 396 241 54 27 chr5 103728263 103728374 -48808885 + MERVL_2A-int LTR ERVL 4608 4721 -1040 2 1376 3113 143 48 9 chr5 103728452 103729010 -48808249 + RMER21B LTR ERV1 49 628 -214 2 1376 251 114 0 22 chr5 103729010 103729055 -48808204 + (GGGAGA)n Simple_repeat Simple_repeat 6 49 0 2 1376 180 0 0 0 chr5 103730329 103730349 -48806910 + (A)n Simple_repeat Simple_repeat 1 20 0 2 1376 242 341 15 38 chr5 103730565 103730696 -48806563 + Charlie9 DNA MER1_type 3 130 -2627 2 1376 324 0 0 0 chr5 103730744 103730780 -48806479 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1376 3163 84 2 0 chr5 103730851 103731257 -48806002 - MTB_Mm LTR MaLR 0 407 1 2 1376 662 254 19 68 chr5 103731831 103732038 -48805221 + B3A SINE B2 2 198 0 2 1376 280 354 75 36 chr5 103732208 103732794 -48804465 - L1M5 LINE L1 -1771 4375 3767 2 1376 255 256 62 15 chr5 103732791 103732903 -48804356 + Lx5 LINE L1 5651 5805 -359 2 1376 3706 74 6 2 chr5 103732903 103733376 -48803883 + MT2C_Mm LTR ERVL 1 475 0 2 1376 225 328 86 30 chr5 103733376 103733461 -48803798 + Lx5 LINE L1 5806 5891 -273 2 1376 366 23 0 0 chr5 103733822 103733865 -48803394 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1376 232 318 0 0 chr5 103733904 103733967 -48803292 - LTR16B LTR ERVL -2 461 399 2 1376 2153 144 68 0 chr5 103734253 103734620 -48802639 - ORR1B1 LTR MaLR -2 392 1 3 1376 273 316 108 38 chr5 103734725 103735094 -48802165 - L1ME2 LINE L1 -48 6116 5722 3 1376 1882 109 28 28 chr5 103735282 103735604 -48801655 + RLTRETN_Mm LTR ERVK 1 322 0 3 1376 258 223 97 18 chr5 103735637 103735751 -48801508 - L1MD LINE L1 -884 5475 5353 3 1376 1947 214 125 90 chr5 103735756 103736412 -48800847 - Lx9 LINE L1 -3 7641 6948 3 1376 1010 67 22 0 chr5 103736412 103736546 -48800713 + B1_Mus1 SINE Alu 1 137 -11 3 1376 297 0 0 0 chr5 103736546 103736579 -48800680 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3 1376 1947 214 125 90 chr5 103736579 103736725 -48800534 - Lx9 LINE L1 -697 6947 6823 3 1376 1481 72 5 5 chr5 103736725 103736920 -48800339 - B2_Mm2 SINE B2 0 195 1 3 1376 1947 214 125 90 chr5 103736920 103737035 -48800224 - Lx9 LINE L1 -822 6822 6691 3 1376 1074 199 40 26 chr5 103737030 103737257 -48800002 + Lx9 LINE L1 6469 6698 -946 3 1376 271 264 69 0 chr5 103737488 103737560 -48799699 + MamRep38 DNA hAT 9 85 -210 3 1376 462 240 19 0 chr5 103737866 103737970 -48799289 + PB1D10 SINE Alu 5 110 -7 3 1376 243 258 45 0 chr5 103737991 103738057 -48799202 + B1F1 SINE Alu 12 80 -69 3 1376 1018 81 59 0 chr5 103738110 103738246 -48799013 + B1_Mus1 SINE Alu 5 148 0 3 1376 756 112 19 26 chr5 103738247 103738403 -48798856 + GA-rich Low_complexity Low_complexity 5 159 0 3 1376 22 0 0 0 chr5 103739360 103739382 -48797877 + GC_rich Low_complexity Low_complexity 1 22 0 3 1376 1174 79 0 19 chr5 103739799 103740007 -48797252 + (TAGA)n Simple_repeat Simple_repeat 1 204 0 3 1376 835 90 8 0 chr5 103740959 103741081 -48796178 + B1_Mus1 SINE Alu 11 133 -15 3 1376 332 333 57 0 chr5 103741260 103741419 -48795840 - L1MD LINE L1 -763 5383 5216 3 1376 256 277 106 72 chr5 103741937 103742170 -48795089 + MIR SINE MIR 1 254 -22 3 1376 34784 65 6 12 chr5 103742426 103747512 -48789747 + L1Md_F2 LINE L1 535 5586 -297 3 1376 8091 50 15 0 chr5 103747512 103748493 -48788766 + L1Md_F2 LINE L1 5587 6582 0 3 1376 22 0 0 0 chr5 103748590 103748612 -48788647 + AT_rich Low_complexity Low_complexity 1 22 0 3 1376 229 351 0 13 chr5 103748626 103748651 -48788608 + ID4_ SINE ID 2 75 -8 3 1376 231 280 0 0 chr5 103748651 103748701 -48788558 + ID SINE ID 27 76 -148 3 1376 279 284 0 0 chr5 103750241 103750315 -48786944 - Lx8 LINE L1 -1070 6403 6330 3 1376 356 281 0 0 chr5 103750351 103750440 -48786819 + Lx8 LINE L1 6439 6527 -946 3 1376 1254 168 67 41 chr5 103750457 103750724 -48786535 - RLTR11A LTR ERVK -26 502 229 3 1376 1358 60 66 0 chr5 103750864 103751047 -48786212 + B2_Mm2 SINE B2 1 195 0 3 1376 1275 119 17 22 chr5 103751388 103751620 -48785639 + RLTR11B LTR ERVK 223 453 0 3 1376 1134 245 37 27 chr5 103751620 103751918 -48785341 + Lx8 LINE L1 6522 6822 -651 3 1376 710 252 137 30 chr5 103751952 103752251 -48785008 + Lx8 LINE L1 6900 7230 -243 3 1376 24 53 0 0 chr5 103753317 103753355 -48783904 + AT_rich Low_complexity Low_complexity 1 38 0 3 1376 1478 52 0 0 chr5 103753362 103753535 -48783724 + B2_Mm1a SINE B2 2 174 -19 3 1376 588 65 0 0 chr5 103753559 103753636 -48783623 + (TA)n Simple_repeat Simple_repeat 1 77 0 3 1376 378 0 0 0 chr5 103753810 103753852 -48783407 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1376 27 81 0 0 chr5 103754857 103754919 -48782340 + AT_rich Low_complexity Low_complexity 1 62 0 3 1376 243 0 0 0 chr5 103754978 103755005 -48782254 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1376 315 0 0 0 chr5 103755173 103755208 -48782051 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 3 1376 366 150 19 29 chr5 103755352 103755455 -48781804 - Lx7 LINE L1 -17 7679 7578 3 1376 2540 171 7 81 chr5 103755956 103756502 -48780757 - RLTR19C LTR ERVK 0 506 1 3 1376 2528 74 12 0 chr5 103756631 103756954 -48780305 + ORR1A2 LTR MaLR 1 327 0 3 1376 856 196 0 0 chr5 103757726 103757869 -48779390 + B1_Mus1 SINE Alu 1 143 -5 3 1376 341 236 20 32 chr5 103757875 103758122 -48779137 + GA-rich Low_complexity Low_complexity 1 243 0 3 1376 207 0 0 0 chr5 103758259 103758282 -48778977 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1376 5302 35 2 0 chr5 103758293 103758912 -48778347 - L1Md_T LINE L1 0 6582 5963 3 1376 198 0 0 0 chr5 103759713 103759735 -48777524 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1376 614 142 0 45 chr5 103759804 103759915 -48777344 + B2_Mm2 SINE B2 2 107 -88 3 1376 25 0 0 0 chr5 103760276 103760301 -48776958 + AT_rich Low_complexity Low_complexity 1 25 0 3 1376 226 155 106 12 chr5 103761485 103761570 -48775689 + Lx9 LINE L1 7424 7516 -128 3 1376 384 249 0 0 chr5 103761571 103761818 -48775441 + (TG)n Simple_repeat Simple_repeat 1 247 0 3 1376 265 309 14 29 chr5 103762502 103762572 -48774687 + PB1D7 SINE Alu 3 71 -49 3 1376 1509 176 79 25 chr5 103763206 103763572 -48773687 - LTRIS4 LTR ERV1 0 507 122 3 1376 1462 72 0 10 chr5 103763716 103763876 -48773383 + B2_Mm1t SINE B2 1 160 -33 3 1376 279 0 0 0 chr5 103763876 103763907 -48773352 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3 1376 1462 72 0 10 chr5 103763907 103763941 -48773318 + B2_Mm1t SINE B2 161 193 0 3 1376 301 312 10 40 chr5 103764061 103764161 -48773098 + RSINE1 SINE B4 3 99 -66 3 1376 1654 148 131 19 chr5 103764170 103764353 -48772906 - RMER17C LTR ERVK -3 407 214 3 1376 333 0 0 0 chr5 103764353 103764390 -48772869 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1376 1654 148 131 19 chr5 103764390 103764572 -48772687 - RMER17C LTR ERVK -197 213 1 3 1376 306 125 0 0 chr5 103764604 103764652 -48772607 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1376 189 0 0 0 chr5 103765954 103765975 -48771284 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1376 1070 182 5 19 chr5 103767303 103767510 -48769749 + MT2B LTR ERVL 398 601 0 3 1376 1173 269 110 37 chr5 103767675 103768158 -48769101 - Lx8 LINE L1 -1 7472 6955 3 1376 1967 100 0 124 chr5 103768158 103768464 -48768795 + ORR1A2 LTR MaLR 1 272 -55 3 1376 1148 75 0 7 chr5 103768464 103768611 -48768648 + B1_Mus2 SINE Alu 1 146 -1 3 1376 1967 100 0 124 chr5 103768611 103768668 -48768591 + ORR1A2 LTR MaLR 273 319 -8 3 1376 477 230 77 31 chr5 103768671 103768801 -48768458 - Lx8 LINE L1 -514 6959 6824 3 1376 256 349 71 57 chr5 103768878 103769300 -48767959 + L1MC4 LINE L1 7483 7910 -132 3 1376 423 38 0 0 chr5 103769303 103769356 -48767903 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1376 809 233 46 28 chr5 103770804 103771020 -48766239 + MT2A LTR ERVL 1 220 -313 3 1376 926 137 6 221 chr5 103771203 103771295 -48765964 + RMER17C LTR ERVK 2 90 -320 3 1376 396 0 0 0 chr5 103771295 103771339 -48765920 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1376 926 137 6 221 chr5 103771339 103771603 -48765656 + RMER17C LTR ERVK 91 281 -129 3 1376 555 179 0 0 chr5 103771619 103771725 -48765534 + CT-rich Low_complexity Low_complexity 2 107 0 3 1376 283 254 0 0 chr5 103772252 103772311 -48764948 + B4A SINE B4 8 66 -226 3 1376 296 211 28 0 chr5 103772301 103772372 -48764887 + MTD LTR MaLR 339 411 -8 3 1376 278 115 0 19 chr5 103772531 103772584 -48764675 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 1376 2878 64 15 2 chr5 103774066 103774460 -48762799 + MTB_Mm LTR MaLR 1 399 -8 3 1376 321 169 0 0 chr5 103774923 103774982 -48762277 + T-rich Low_complexity Low_complexity 1 59 0 3 1376 993 142 0 0 chr5 103775020 103775189 -48762070 + (CCTG)n Simple_repeat Simple_repeat 1 169 0 3 1376 2556 230 116 2 chr5 103775190 103775770 -48761489 - Lx6 LINE L1 -20 7440 6795 3 1376 260 208 75 38 chr5 103775781 103775861 -48761398 + RLTR19-int LTR ERVK 2050 2132 -4005 3 1376 246 132 0 0 chr5 103776246 103776299 -48760960 + (T)n Simple_repeat Simple_repeat 1 53 0 3 1376 1697 26 0 0 chr5 103776301 103776493 -48760766 - B2_Mm1a SINE B2 0 193 2 3 1376 398 17 52 0 chr5 103776579 103776637 -48760622 - L1Md_F2 LINE L1 -3 6579 6519 3 1376 465 276 26 57 chr5 103777044 103777236 -48760023 + MT2A LTR ERVL 191 376 -157 3 1376 251 191 65 117 chr5 103777393 103777470 -48759789 - PB1D7 SINE Alu -6 114 42 3 1376 799 238 170 28 chr5 103777470 103777522 -48759737 + ORR1D2 LTR MaLR 1 59 -311 3 1376 2061 104 6 122 chr5 103777522 103777874 -48759385 - RLTR10E LTR ERVK 0 311 1 3 1376 799 238 170 28 chr5 103777874 103778145 -48759114 + ORR1D2 LTR MaLR 60 370 0 3 1376 225 244 171 49 chr5 103779597 103779679 -48757580 + RSINE1 SINE B4 3 94 -71 3 1376 396 0 0 0 chr5 103779773 103779817 -48757442 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 1376 250 257 28 28 chr5 103779829 103779901 -48757358 + RSINE1 SINE B4 78 149 -16 3 1376 971 122 0 6 chr5 103779916 103780089 -48757170 + (CA)n Simple_repeat Simple_repeat 2 173 0 3 1376 328 248 35 57 chr5 103780507 103780648 -48756611 + RNLTR23 LTR ERVK 479 616 -26 3 1376 198 356 92 40 chr5 103782545 103782773 -48754486 + L2a LINE L2 2826 3065 -354 3 1376 235 312 83 0 chr5 103782966 103783075 -48754184 + L2a LINE L2 3297 3414 -12 3 1376 954 122 0 0 chr5 103783075 103783223 -48754036 + (GGAA)n Simple_repeat Simple_repeat 2 149 0 3 1376 240 290 43 14 chr5 103783740 103783810 -48753449 - PB1D7 SINE Alu -13 107 36 3 1376 240 333 11 44 chr5 103784812 103784903 -48752356 + MTEb LTR MaLR 3 90 -269 3 1376 309 270 80 9 chr5 103784952 103785064 -48752195 + MTEb LTR MaLR 252 371 -8 3 1376 207 0 0 0 chr5 103785186 103785209 -48752050 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1376 1492 143 65 98 chr5 103785481 103785837 -48751422 - ORR1B1 LTR MaLR -14 380 37 3 1376 326 171 14 0 chr5 103786017 103786087 -48751172 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 3 1376 189 214 0 0 chr5 103786087 103786129 -48751130 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1376 186 43 0 0 chr5 103786471 103786494 -48750765 + (CCA)n Simple_repeat Simple_repeat 2 24 0 3 1376 1218 55 7 0 chr5 103787275 103787421 -48749838 + B1_Mus1 SINE Alu 2 148 0 3 1376 618 109 0 0 chr5 103787429 103787521 -48749738 + (GAAA)n Simple_repeat Simple_repeat 3 94 0 3 1376 392 265 17 73 chr5 103787532 103787711 -48749548 + B3A SINE B2 24 192 -6 3 1376 341 252 29 29 chr5 103787957 103788059 -48749200 + PB1D10 SINE Alu 15 116 -1 3 1376 3397 181 40 31 chr5 103788252 103788924 -48748335 - RLTR33 LTR ERVK 0 678 1 3 1376 372 77 0 0 chr5 103790342 103790394 -48746865 + (GTTTG)n Simple_repeat Simple_repeat 3 54 0 3 1376 398 311 0 0 chr5 103790422 103790525 -48746734 - PB1D10 SINE Alu -12 105 3 3 1376 31 72 0 12 chr5 103790531 103790575 -48746684 + AT_rich Low_complexity Low_complexity 1 44 0 4 1376 1250 128 0 11 chr5 103790575 103790765 -48746494 + B2_Mm2 SINE B2 3 190 -5 4 1376 31 72 0 12 chr5 103790765 103790804 -48746455 + AT_rich Low_complexity Low_complexity 1 39 0 4 1376 1619 148 93 93 chr5 103790925 103791312 -48745947 + ORR1B1 LTR MaLR 8 394 0 4 1376 918 304 7 37 chr5 103791315 103791615 -48745644 + B4A SINE B4 2 292 0 4 1376 697 174 36 18 chr5 103792657 103792963 -48744296 + GA-rich Low_complexity Low_complexity 1 311 0 4 1376 1057 58 65 0 chr5 103792987 103793126 -48744133 + B1_Mus1 SINE Alu 1 148 0 4 1376 355 284 128 10 chr5 103794852 103795048 -48742211 + L1MB4 LINE L1 5958 6176 -4 4 1376 745 188 41 69 chr5 103795678 103796157 -48741102 - RMER17C LTR ERVK 0 410 1 4 1376 421 326 98 25 chr5 103796563 103796837 -48740422 + L1MC3 LINE L1 6732 7025 -760 4 1376 189 74 0 0 chr5 103797289 103797316 -48739943 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1376 1075 67 0 0 chr5 103797352 103797486 -48739773 - B1_Mus1 SINE Alu -14 134 1 4 1376 695 86 83 33 chr5 103797507 103797627 -48739632 + B1_Mus1 SINE Alu 23 148 0 4 1376 270 0 0 0 chr5 103797632 103797662 -48739597 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1376 182 75 18 70 chr5 103798312 103798369 -48738890 + (TTTG)n Simple_repeat Simple_repeat 4 57 0 4 1376 429 141 0 0 chr5 103798567 103798654 -48738605 + B1_Mur2 SINE Alu 34 120 0 4 1376 917 47 149 45 chr5 103798660 103798794 -48738465 + B1_Mus1 SINE Alu 1 148 0 4 1376 1454 62 15 25 chr5 103798823 103799020 -48738239 - B2_Mm2 SINE B2 0 195 1 4 1376 195 114 0 0 chr5 103799366 103799401 -48737858 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 4 1376 408 125 0 0 chr5 103799399 103799463 -48737796 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1376 284 280 0 13 chr5 103800121 103800197 -48737062 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 4 1376 1080 90 32 0 chr5 103800287 103800443 -48736816 + B2_Mm2 SINE B2 1 161 -34 4 1376 375 60 0 0 chr5 103800446 103800496 -48736763 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1376 1600 148 50 7 chr5 103800650 103800929 -48736330 - ORR1A2 LTR MaLR -8 319 29 4 1376 464 111 3 53 chr5 103800977 103801095 -48736164 - ORR1A4 LTR MaLR -248 146 1 4 1376 1032 236 172 52 chr5 103801706 103802206 -48735053 + Lx9 LINE L1 7081 7640 -4 4 1376 1095 90 0 24 chr5 103802210 103802380 -48734879 + B2_Mm2 SINE B2 2 167 -28 4 1376 27 29 0 0 chr5 103802397 103802431 -48734828 + AT_rich Low_complexity Low_complexity 1 34 0 4 1376 686 247 21 58 chr5 103802454 103802643 -48734616 - B3A SINE B2 -16 182 1 4 1376 612 191 60 15 chr5 103802728 103802861 -48734398 + RSINE1 SINE B4 4 142 -23 4 1376 313 230 14 0 chr5 103804565 103804639 -48732620 - ID2 SINE ID -1 82 8 4 1376 268 299 60 14 chr5 103804784 103804898 -48732361 + MIRc SINE MIR 34 148 -60 4 1376 189 0 0 0 chr5 103805295 103805316 -48731943 + (CAA)n Simple_repeat Simple_repeat 2 22 0 4 1376 291 228 0 35 chr5 103805341 103805413 -48731846 + ID4 SINE ID 6 74 -78 4 1376 189 0 0 0 chr5 103807308 103807329 -48729930 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 4 1376 2174 75 3 67 chr5 103808011 103808354 -48728905 - ORR1A4 LTR MaLR -8 321 1 4 1376 1142 55 14 0 chr5 103808721 103808866 -48728393 + B1_Mus2 SINE Alu 1 147 0 4 1376 610 35 0 0 chr5 103808868 103808953 -48728306 + L1Md_F3 LINE L1 6486 6570 -14 4 1376 180 0 0 0 chr5 103808961 103808981 -48728278 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1377 367 267 34 17 chr5 103809037 103809155 -48728104 + ID_B1 SINE B4 87 206 -18 4 1377 1276 87 21 42 chr5 103809309 103809501 -48727758 - B2_Mm2 SINE B2 -6 189 2 4 1377 870 175 198 0 chr5 103809532 103809709 -48727550 - B3 SINE B2 -3 213 2 4 1377 395 361 97 22 chr5 103810470 103810790 -48726469 + MLT1J-int LTR MaLR 628 971 -416 4 1377 1326 84 11 0 chr5 103810833 103811023 -48726236 + RMER6A LTR ERVK 2 193 -563 4 1377 984 142 0 13 chr5 103811024 103811181 -48726078 + B2_Mm2 SINE B2 1 155 -40 4 1377 233 0 62 0 chr5 103811181 103811213 -48726046 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 4 1377 6638 235 62 45 chr5 103811223 103812906 -48724353 - Lx9 LINE L1 -128 7516 5787 4 1377 1160 75 0 0 chr5 103812906 103813053 -48724206 - B1_Mm SINE Alu 0 147 1 4 1377 6638 203 82 64 chr5 103813053 103813750 -48723509 - Lx9 LINE L1 -1858 5786 5020 4 1377 1348 182 53 112 chr5 103813751 103814371 -48722888 + RLTR31A_Mm LTR ERVK 1 561 0 4 1377 2263 58 64 0 chr5 103814375 103814688 -48722571 + IAPEY_LTR LTR ERVK 53 385 0 4 1377 1365 206 81 102 chr5 103814688 103815110 -48722149 - Lx9 LINE L1 -823 5024 4612 4 1377 402 374 72 9 chr5 103815112 103815333 -48721926 + MLT1J LTR MaLR 50 284 -228 4 1377 333 198 49 0 chr5 103815517 103815598 -48721661 - MTEa LTR MaLR -2 377 293 4 1377 215 318 45 0 chr5 103815608 103815674 -48721585 + ID4_ SINE ID 1 69 -14 4 1377 315 0 0 0 chr5 103815700 103815735 -48721524 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 1377 369 0 0 0 chr5 103815735 103815775 -48721484 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1377 978 211 206 25 chr5 103815923 103816243 -48721016 - ORR1C1 LTR MaLR 0 378 1 4 1377 759 335 73 14 chr5 103816961 103817397 -48719862 - LTR40a LTR ERVL -53 466 5 4 1377 24 32 0 0 chr5 103817634 103817665 -48719594 + AT_rich Low_complexity Low_complexity 1 31 0 4 1377 1649 16 16 0 chr5 103817715 103817904 -48719355 + B2_Mm1a SINE B2 2 193 0 4 1377 219 286 0 0 chr5 103818058 103818107 -48719152 + PB1D10 SINE Alu 53 101 -16 4 1377 532 171 0 31 chr5 103818139 103818266 -48718993 + GA-rich Low_complexity Low_complexity 4 126 0 4 1377 207 363 48 7 chr5 103818344 103818491 -48718768 + L2c LINE L2 2632 2784 -635 4 1377 222 358 119 18 chr5 103818618 103818786 -48718473 + L2c LINE L2 2937 3121 -266 4 1377 1221 48 0 0 chr5 103818961 103819108 -48718151 - B1_Mus1 SINE Alu 0 148 2 4 1377 538 241 22 132 chr5 103819387 103819569 -48717690 + RSINE1 SINE B4 2 163 -2 4 1377 615 274 59 34 chr5 103819601 103819805 -48717454 + B4A SINE B4 84 292 0 4 1377 312 158 0 0 chr5 103819808 103819865 -48717394 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1377 1191 62 7 0 chr5 103820121 103820267 -48716992 + B1_Mus1 SINE Alu 2 148 0 4 1377 359 127 16 0 chr5 103820297 103820360 -48716899 + (GGA)n Simple_repeat Simple_repeat 3 66 0 4 1377 1557 17 0 0 chr5 103820364 103820544 -48716715 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1377 433 265 76 12 chr5 103820940 103821112 -48716147 - L1MA6 LINE L1 -44 6256 6074 4 1377 23 33 0 0 chr5 103821149 103821179 -48716080 + AT_rich Low_complexity Low_complexity 1 30 0 4 1377 1064 102 7 0 chr5 103821193 103821340 -48715919 - B1_Mus1 SINE Alu 0 148 1 4 1377 393 22 0 0 chr5 103821354 103821400 -48715859 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 1377 1040 87 0 0 chr5 103821400 103821538 -48715721 - B1_Mus1 SINE Alu -10 138 1 4 1377 195 184 0 0 chr5 103822153 103822191 -48715068 + GA-rich Low_complexity Low_complexity 3 40 0 4 1377 22 0 0 0 chr5 103822424 103822446 -48714813 + GC_rich Low_complexity Low_complexity 1 22 0 4 1377 186 43 0 0 chr5 103822656 103822679 -48714580 + (TCCC)n Simple_repeat Simple_repeat 2 24 0 4 1377 266 229 0 16 chr5 103823461 103823523 -48713736 - ID4_ SINE ID -10 73 13 4 1377 276 174 46 11 chr5 103823882 103823969 -48713290 + T-rich Low_complexity Low_complexity 1 90 0 4 1377 516 191 59 111 chr5 103823979 103824132 -48713127 - B1_Mur4 SINE Alu -2 148 4 4 1377 1441 92 0 15 chr5 103824553 103824751 -48712508 + B2_Mm2 SINE B2 1 195 0 4 1377 220 269 27 20 chr5 103825519 103825667 -48711592 + (TTATA)n Simple_repeat Simple_repeat 5 153 0 4 1377 390 21 0 0 chr5 103825716 103825763 -48711496 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1377 231 310 0 74 chr5 103825763 103825871 -48711388 - RSINE1 SINE B4 -63 102 3 4 1377 592 36 12 0 chr5 103826821 103826904 -48710355 + B1_Mus2 SINE Alu 64 147 0 4 1377 239 71 24 0 chr5 103826904 103826946 -48710313 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 4 1377 1445 79 0 5 chr5 103828233 103828424 -48708835 + B2_Mm2 SINE B2 1 190 -5 4 1377 325 20 40 20 chr5 103828615 103828665 -48708594 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 4 1377 1134 52 0 0 chr5 103828665 103828800 -48708459 - B1_Mus2 SINE Alu -11 136 2 4 1377 2792 28 3 0 chr5 103829327 103829649 -48707610 + L1Md_F2 LINE L1 5264 5586 -297 4 1377 8193 46 1 9 chr5 103829649 103830652 -48706607 + L1Md_F2 LINE L1 5587 6581 -1 4 1377 216 0 0 0 chr5 103830667 103830691 -48706568 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1377 237 234 172 0 chr5 103831753 103831817 -48705442 - PB1D10 SINE Alu -37 80 6 4 1377 355 202 20 0 chr5 103831973 103832072 -48705187 + (TA)n Simple_repeat Simple_repeat 1 101 0 4 1377 3014 46 0 3 chr5 103832077 103832469 -48704790 + MTA_Mm LTR MaLR 1 391 -5 4 1377 552 30 0 0 chr5 103832469 103832535 -48704724 + (TAGA)n Simple_repeat Simple_repeat 2 67 0 4 1377 1275 72 4 142 chr5 103832689 103832722 -48704537 - B2_Mm2 SINE B2 0 195 163 4 1377 1073 83 14 0 chr5 103832722 103832866 -48704393 + B1_Mus1 SINE Alu 1 146 -2 4 1377 1275 72 4 142 chr5 103832866 103832895 -48704364 - B2_Mm2 SINE B2 -33 162 162 4 1377 180 0 0 0 chr5 103832895 103832915 -48704344 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4 1377 1275 72 4 142 chr5 103832915 103833076 -48704183 - B2_Mm2 SINE B2 -33 162 2 4 1377 338 333 166 23 chr5 103833910 103834435 -48702824 - L1M5 LINE L1 -1416 4730 4131 4 1377 389 327 192 11 chr5 103834855 103835214 -48702045 + MLT2B2 LTR ERVL 1 424 -91 4 1377 249 250 55 14 chr5 103835332 103835405 -48701854 - L1M5 LINE L1 -2059 4087 4012 4 1377 404 35 35 0 chr5 103835620 103835677 -48701582 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 5 1377 2463 87 77 28 chr5 103835710 103836102 -48701157 - IAPLTR2a LTR ERVK 0 411 1 5 1377 6352 31 3 19 chr5 103836104 103836860 -48700399 - IAPEz-int LTR ERVK -2 6479 5736 5 1377 2316 54 0 0 chr5 103836859 103837137 -48700122 - IAPEz-int LTR ERVK -4845 1636 1359 5 1377 3634 60 1 16 chr5 103837137 103837715 -48699544 - IAPEz-int LTR ERVK -5819 662 168 5 1377 240 244 0 0 chr5 103837715 103837760 -48699499 - RLTR27 LTR ERVK -34 275 231 5 1377 532 86 78 186 chr5 103837760 103837889 -48699370 - IAPEz-int LTR ERVK -6358 123 9 5 1377 2494 87 77 28 chr5 103837890 103838282 -48698977 - IAPLTR2a LTR ERVK 0 411 1 5 1377 556 278 22 11 chr5 103838515 103838693 -48698566 + B3A SINE B2 4 183 -15 5 1377 370 208 122 27 chr5 103838729 103838877 -48698382 - L1M5 LINE L1 -2196 3950 3789 4 1377 912 82 217 48 chr5 103839083 103839217 -48698042 + B2_Mm2 SINE B2 2 171 -24 5 1377 384 22 0 0 chr5 103839217 103839262 -48697997 + (CATA)n Simple_repeat Simple_repeat 2 46 0 5 1377 912 82 217 48 chr5 103839262 103839293 -48697966 + B2_Mm2 SINE B2 172 195 0 5 1377 1488 74 0 5 chr5 103839373 103839564 -48697695 + B2_Mm2 SINE B2 3 192 -3 5 1377 428 365 20 24 chr5 103839583 103839838 -48697421 + L1MA4 LINE L1 5638 5891 -409 5 1377 550 200 0 26 chr5 103839854 103839967 -48697292 + B1_Mur2 SINE Alu 40 149 0 5 1377 180 0 0 0 chr5 103839970 103839990 -48697269 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1377 1191 48 0 20 chr5 103840458 103840594 -48696665 + B1_Mm SINE Alu 1 136 -11 5 1377 207 0 0 0 chr5 103840594 103840617 -48696642 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1377 1191 48 0 20 chr5 103840617 103840630 -48696629 + B1_Mm SINE Alu 137 147 0 5 1377 344 22 0 22 chr5 103841627 103841673 -48695586 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1377 333 0 0 0 chr5 103841673 103841709 -48695550 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1377 3558 106 98 27 chr5 103842109 103842670 -48694589 + MT2B LTR ERVL 1 601 0 5 1377 21 0 0 0 chr5 103842689 103842710 -48694549 + AT_rich Low_complexity Low_complexity 1 21 0 5 1377 1180 218 12 4 chr5 103842719 103842963 -48694296 - Lx5 LINE L1 0 7050 6805 5 1377 473 115 13 0 chr5 103843004 103843082 -48694177 + (TCC)n Simple_repeat Simple_repeat 1 79 0 5 1377 288 299 83 9 chr5 103843246 103843354 -48693905 + PB1D10 SINE Alu 1 116 -1 5 1377 263 104 41 20 chr5 103843444 103843493 -48693766 + B2_Mm2 SINE B2 47 96 -99 5 1377 459 0 0 0 chr5 103843545 103843596 -48693663 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5 1377 384 267 149 8 chr5 103843609 103843730 -48693529 - RSINE1 SINE B4 -25 140 3 5 1377 264 30 0 0 chr5 103843833 103843866 -48693393 + (TG)n Simple_repeat Simple_repeat 2 34 0 5 1377 480 111 0 0 chr5 103843958 103844030 -48693229 + (TC)n Simple_repeat Simple_repeat 2 73 0 5 1377 200 209 0 0 chr5 103844134 103844177 -48693082 + A-rich Low_complexity Low_complexity 2 44 0 5 1377 2198 23 19 0 chr5 103844297 103844557 -48692702 - L1Md_F2 LINE L1 -5 6577 6313 5 1377 392 250 0 12 chr5 103844655 103844736 -48692523 + RSINE1 SINE B4 2 81 -84 5 1377 228 318 0 57 chr5 103845274 103845344 -48691915 - ID4 SINE ID -7 76 11 5 1377 444 37 0 0 chr5 103845344 103845398 -48691861 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1377 1484 265 45 24 chr5 103845567 103845992 -48691267 + Lx8 LINE L1 6119 6552 -921 5 1377 222 269 30 0 chr5 103846307 103846374 -48690885 - L2a LINE L2 -47 3379 3311 5 1377 359 336 30 15 chr5 103846448 103846581 -48690678 - RSINE1 SINE B4 -29 136 2 5 1377 577 114 414 8 chr5 103846610 103846743 -48690516 + B2_Mm2 SINE B2 1 187 -8 5 1377 769 253 36 10 chr5 103846767 103846959 -48690300 - B3 SINE B2 -19 197 1 5 1377 3017 268 143 25 chr5 103847023 103848152 -48689107 - Lx8 LINE L1 -79 7394 6132 5 1377 2523 165 63 32 chr5 103848719 103849277 -48687982 + RMER15 LTR ERVL 1 575 0 5 1377 229 272 12 24 chr5 103851909 103851992 -48685267 - L1MD LINE L1 -2042 4104 4023 5 1377 405 0 0 0 chr5 103852446 103852491 -48684768 + (T)n Simple_repeat Simple_repeat 1 45 0 5 1377 22 70 0 0 chr5 103854387 103854430 -48682829 + GC_rich Low_complexity Low_complexity 1 43 0 5 1377 279 0 0 0 chr5 103855947 103855978 -48681281 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1377 1224 35 0 0 chr5 103856855 103857000 -48680259 + B1_Mus2 SINE Alu 2 146 -1 5 1377 1423 80 11 0 chr5 103857043 103857230 -48680029 - B2_Mm2 SINE B2 -5 190 2 5 1377 671 207 21 7 chr5 103857376 103857517 -48679742 - B1_Mur3 SINE Alu -2 147 5 5 1377 896 166 168 15 chr5 103858169 103858365 -48678894 - URR1A DNA MER1_type 0 226 1 5 1377 838 235 84 62 chr5 103858889 103859197 -48678062 + ORR1D2 LTR MaLR 56 370 0 5 1377 334 331 59 0 chr5 103859203 103859339 -48677920 - Lx8 LINE L1 -626 6847 6704 5 1377 240 163 0 0 chr5 103859349 103859392 -48677867 + (CATA)n Simple_repeat Simple_repeat 2 44 0 5 1377 793 183 0 22 chr5 103859395 103859579 -48677680 + (TA)n Simple_repeat Simple_repeat 1 180 0 5 1377 27 29 0 0 chr5 103859587 103859621 -48677638 + AT_rich Low_complexity Low_complexity 1 34 0 5 1377 1169 266 15 40 chr5 103859627 103859956 -48677303 - Lx8 LINE L1 -789 6684 6364 5 1377 878 181 298 0 chr5 103859986 103860275 -48676984 - MTD LTR MaLR -42 379 1 5 1377 284 192 0 19 chr5 103860275 103860328 -48676931 - Lx8 LINE L1 -1107 6366 6315 5 1377 214 162 27 0 chr5 103860794 103860831 -48676428 + CT-rich Low_complexity Low_complexity 2 39 0 5 1377 272 291 106 26 chr5 103861304 103861417 -48675842 - ID_B1 SINE B4 -26 198 77 5 1377 21 36 0 0 chr5 103862014 103862042 -48675217 + AT_rich Low_complexity Low_complexity 1 28 0 5 1377 609 193 26 52 chr5 103862333 103862486 -48674773 - B1_Mur2 SINE Alu 0 149 1 5 1377 1257 53 88 6 chr5 103862571 103862741 -48674518 - B2_Mm2 SINE B2 -10 185 2 5 1377 254 208 153 20 chr5 103863605 103863703 -48673556 - PB1D10 SINE Alu 0 117 7 5 1377 1163 62 0 0 chr5 103864170 103864316 -48672943 - B1_Mus2 SINE Alu 0 147 2 5 1377 247 227 15 29 chr5 103864810 103864878 -48672381 + GA-rich Low_complexity Low_complexity 1 67 0 5 1377 914 74 86 29 chr5 103866181 103866320 -48670939 - B1_Mus1 SINE Alu 0 148 2 5 1377 22 35 0 0 chr5 103866329 103866358 -48670901 + AT_rich Low_complexity Low_complexity 1 29 0 5 1377 464 212 184 28 chr5 103866370 103866511 -48670748 - RSINE1 SINE B4 -1 164 2 5 1377 1091 222 167 9 chr5 103866872 103867208 -48670051 + MTC LTR MaLR 33 421 0 5 1377 326 242 94 31 chr5 103867213 103867341 -48669918 - MIRc SINE MIR -114 154 19 5 1377 234 91 0 0 chr5 103869067 103869100 -48668159 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 5 1377 477 203 81 41 chr5 103869113 103869236 -48668023 - B1_Mur1 SINE Alu -21 128 1 5 1377 488 252 65 19 chr5 103869301 103869455 -48667804 - RSINE1 SINE B4 0 165 5 5 1377 251 171 64 55 chr5 103869794 103869880 -48667379 + BC1_Mm scRNA scRNA 4 90 -62 5 1377 207 0 0 0 chr5 103870083 103870106 -48667153 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1377 489 76 0 0 chr5 103870282 103870348 -48666911 + (TA)n Simple_repeat Simple_repeat 2 67 0 5 1377 252 86 0 0 chr5 103870760 103870795 -48666464 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1377 681 274 70 28 chr5 103871079 103871364 -48665895 + L1MEc LINE L1 23 319 -6081 5 1377 21 0 0 0 chr5 103871849 103871870 -48665389 + AT_rich Low_complexity Low_complexity 1 21 0 5 1377 234 200 20 0 chr5 103872101 103872151 -48665108 + CT-rich Low_complexity Low_complexity 4 54 0 5 1377 341 266 45 34 chr5 103872359 103872538 -48664721 + L1MEc LINE L1 1176 1356 -5044 5 1377 1292 213 147 106 chr5 103872542 103873052 -48664207 - MT2A LTR ERVL 0 533 3 5 1377 285 250 102 51 chr5 103873063 103873240 -48664019 + L1MEc LINE L1 1381 1566 -4834 5 1377 1099 119 52 31 chr5 103873241 103873432 -48663827 + B2_Mm2 SINE B2 1 195 0 5 1377 207 0 0 0 chr5 103873959 103873982 -48663277 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5 1377 1162 82 0 0 chr5 103873987 103874134 -48663125 - B1_Mus2 SINE Alu 0 147 1 5 1377 1164 48 7 13 chr5 103874169 103874318 -48662941 + B1_Mus1 SINE Alu 1 148 0 5 1377 311 43 64 0 chr5 103874318 103874365 -48662894 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 5 1377 503 293 166 49 chr5 103874399 103874683 -48662576 - MER68 LTR ERVL -187 376 60 5 1377 656 173 63 0 chr5 103874843 103874970 -48662289 - B1_Mus2 SINE Alu 0 147 13 5 1377 334 266 67 42 chr5 103874973 103875019 -48662240 - B2_Mm2 SINE B2 -24 171 131 5 1377 270 0 0 0 chr5 103875019 103875049 -48662210 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1377 349 242 70 0 chr5 103875049 103875167 -48662092 - B3A SINE B2 -74 142 3 5 1377 327 49 0 0 chr5 103875220 103875261 -48661998 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1377 473 278 62 28 chr5 103875332 103875510 -48661749 - ID_B1 SINE B4 0 224 41 5 1377 675 167 64 29 chr5 103875510 103875683 -48661576 - Lx4A LINE L1 -36 7022 6844 5 1377 330 276 19 19 chr5 103876436 103876543 -48660716 + PB1D10 SINE Alu 1 107 -10 5 1377 294 352 31 6 chr5 103877258 103877418 -48659841 - MER3 DNA MER1_type 0 209 46 5 1377 443 200 186 0 chr5 103877710 103877850 -48659409 + Lx6 LINE L1 7283 7448 -12 5 1377 533 272 0 7 chr5 103878368 103878505 -48658754 + B1F2 SINE Alu 1 136 -13 5 1377 1136 211 201 6 chr5 103878505 103878843 -48658416 + MTD LTR MaLR 4 407 -12 5 1377 1634 37 0 0 chr5 103879423 103879610 -48657649 - B2_Mm1a SINE B2 -5 188 2 5 1377 262 288 104 74 chr5 103879611 103879949 -48657310 - MER113 DNA MER1_type -79 442 95 5 1377 2471 118 50 32 chr5 103880133 103880572 -48656687 + RMER15 LTR ERVL 39 485 -90 5 1377 358 197 0 0 chr5 103880577 103880648 -48656611 - ORR1C2 LTR MaLR -23 361 291 5 1377 180 216 0 0 chr5 103880778 103880829 -48656430 + CT-rich Low_complexity Low_complexity 2 52 0 5 1377 1362 75 37 16 chr5 103882086 103882277 -48654982 + B2_Mm2 SINE B2 1 195 0 5 1377 1058 184 39 5 chr5 103882874 103883082 -48654177 - B3 SINE B2 -1 215 1 5 1377 227 169 69 14 chr5 103883145 103883217 -48654042 - L1MC LINE L1 -2424 5458 5383 5 1377 374 277 88 51 chr5 103883230 103883367 -48653892 - RSINE1 SINE B4 -1 164 23 6 1377 524 213 260 45 chr5 103883524 103883701 -48653558 - B3 SINE B2 -1 215 1 6 1377 258 307 21 14 chr5 103883719 103883861 -48653398 - L1M2 LINE L1 -911 5232 5090 6 1377 429 308 44 66 chr5 103883912 103884138 -48653121 - L1M2 LINE L1 -2390 3753 3533 6 1377 676 149 0 0 chr5 103884843 103884950 -48652309 - B2_Mm2 SINE B2 -88 107 1 6 1377 252 260 21 10 chr5 103885001 103885098 -48652161 - L1MDa LINE L1 -4717 1916 1819 6 1377 21 0 0 0 chr5 103885285 103885306 -48651953 + AT_rich Low_complexity Low_complexity 1 21 0 6 1377 1070 106 99 6 chr5 103885378 103885549 -48651710 + B2_Mm2 SINE B2 1 187 -8 6 1377 701 128 175 8 chr5 103885630 103885756 -48651503 - B1_Mur4 SINE Alu -2 148 2 6 1377 189 0 0 0 chr5 103887004 103887025 -48650234 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 6 1377 286 282 90 59 chr5 103887351 103887573 -48649686 - LTR78 LTR ERV1 -84 1220 992 6 1377 269 345 84 21 chr5 103888305 103888447 -48648812 - LTR78 LTR ERV1 -954 350 200 6 1377 4565 210 73 20 chr5 103888903 103889979 -48647280 - Lx9 LINE L1 -356 7288 6156 6 1377 285 29 0 0 chr5 103890543 103890577 -48646682 + (CCA)n Simple_repeat Simple_repeat 1 34 0 6 1377 185 340 25 31 chr5 103891592 103891753 -48645506 - L2c LINE L2 -185 3202 3043 6 1377 424 296 38 38 chr5 103892010 103892193 -48645066 + MER5A DNA MER1_type 2 184 -5 6 1377 23 0 0 0 chr5 103894382 103894405 -48642854 + AT_rich Low_complexity Low_complexity 1 23 0 6 1377 327 146 0 0 chr5 103895277 103895332 -48641927 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1377 21 57 0 0 chr5 103895590 103895625 -48641634 + AT_rich Low_complexity Low_complexity 1 35 0 6 1377 226 240 0 123 chr5 103896530 103896701 -48640558 + (CAGGG)n Simple_repeat Simple_repeat 1 150 0 6 1377 416 303 47 24 chr5 103896783 103896952 -48640307 + MER2 DNA MER2_type 7 179 -166 6 1377 913 135 0 15 chr5 103896978 103896990 -48640269 + L1Md_F2 LINE L1 6047 6057 -525 6 1377 2805 59 56 11 chr5 103896990 103897368 -48639891 - L1Md_F2 LINE L1 -12 6570 6176 6 1377 987 68 0 0 chr5 103897368 103897490 -48639769 + L1Md_F2 LINE L1 6058 6180 -402 6 1377 295 282 64 0 chr5 103897498 103897576 -48639683 + MER2 DNA MER2_type 258 340 -5 6 1377 209 57 0 28 chr5 103897622 103897658 -48639601 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 6 1377 1099 88 7 0 chr5 103897661 103897808 -48639451 - B1_Mus1 SINE Alu 0 148 1 6 1377 950 255 132 75 chr5 103897932 103898233 -48639026 - MTD LTR MaLR 0 419 74 6 1377 1517 63 0 0 chr5 103898233 103898422 -48638837 - B2_Mm2 SINE B2 -5 190 2 6 1377 950 255 132 75 chr5 103898422 103898506 -48638753 - MTD LTR MaLR -346 73 12 6 1377 820 178 7 27 chr5 103898975 103899125 -48638134 + B1_Mus1 SINE Alu 1 147 -1 6 1377 810 112 22 0 chr5 103899558 103899692 -48637567 + B2_Mm2 SINE B2 52 188 -7 6 1377 321 244 55 0 chr5 103899849 103900013 -48637246 + (CTTG)n Simple_repeat Simple_repeat 2 174 0 6 1377 494 216 15 67 chr5 103902274 103902408 -48634851 - B1F SINE Alu 0 149 23 6 1377 24 0 0 0 chr5 103902890 103902914 -48634345 + AT_rich Low_complexity Low_complexity 1 24 0 6 1377 24 32 0 0 chr5 103903584 103903615 -48633644 + AT_rich Low_complexity Low_complexity 1 31 0 6 1377 468 279 42 28 chr5 103903640 103903784 -48633475 - RSINE1 SINE B4 -17 148 3 6 1377 208 77 0 49 chr5 103904047 103904088 -48633171 + (TTAG)n Simple_repeat Simple_repeat 3 41 0 6 1377 21 0 0 0 chr5 103904977 103904998 -48632261 + AT_rich Low_complexity Low_complexity 1 21 0 6 1377 652 265 0 18 chr5 103905022 103905187 -48632072 - RSINE1 SINE B4 0 165 4 6 1377 507 251 95 16 chr5 103905262 103905452 -48631807 + B4A SINE B4 48 252 -40 6 1377 30 0 0 0 chr5 103906271 103906301 -48630958 + AT_rich Low_complexity Low_complexity 1 30 0 6 1377 6275 1 0 0 chr5 103907795 103908474 -48628785 - L1Md_A LINE L1 0 6582 5904 6 1377 636 298 30 25 chr5 103908864 103909067 -48628192 + ID_B1 SINE B4 4 207 -17 6 1377 277 147 196 0 chr5 103909104 103909206 -48628053 + Lx9 LINE L1 7523 7644 0 6 1377 2019 117 93 8 chr5 103909434 103909789 -48627470 - ORR1B1 LTR MaLR -9 385 1 6 1377 6692 171 90 11 chr5 103909789 103910004 -48627255 - ORR1B1-int LTR MaLR 0 1509 1292 6 1377 216 0 0 0 chr5 103910004 103910028 -48627231 + (TA)n Simple_repeat Simple_repeat 2 25 0 6 1377 6692 171 90 11 chr5 103910028 103911209 -48626050 - ORR1B1-int LTR MaLR -218 1291 4 6 1377 1900 138 101 20 chr5 103911218 103911574 -48625685 - ORR1B1 LTR MaLR -9 385 1 6 1377 198 71 0 0 chr5 103911591 103911619 -48625640 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1377 207 69 0 0 chr5 103911663 103911692 -48625567 + (T)n Simple_repeat Simple_repeat 1 29 0 6 1377 525 99 287 0 chr5 103912145 103912246 -48625013 + RMER19B LTR ERVK 1 130 -772 6 1377 2838 74 5 5 chr5 103912246 103912642 -48624617 - MTA_Mm LTR MaLR 0 396 1 6 1377 3541 165 88 3 chr5 103912642 103913298 -48623961 + RMER19B LTR ERVK 126 837 -65 6 1377 1148 255 12 8 chr5 103913298 103913555 -48623704 + Lx9 LINE L1 7107 7364 -280 6 1377 210 171 0 0 chr5 103914707 103914748 -48622511 + (CAGG)n Simple_repeat Simple_repeat 1 41 0 6 1377 592 13 26 0 chr5 103915120 103915197 -48622062 + (TG)n Simple_repeat Simple_repeat 2 80 0 6 1377 470 336 40 22 chr5 103916573 103916847 -48620412 + B4A SINE B4 3 281 -11 6 1377 360 0 0 0 chr5 103916912 103916952 -48620307 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1377 379 253 0 11 chr5 103917012 103917104 -48620155 + BC1_Mm scRNA scRNA 1 91 -61 6 1377 22 80 0 0 chr5 103917397 103917447 -48619812 + AT_rich Low_complexity Low_complexity 1 50 0 6 1377 202 241 0 0 chr5 103917593 103917647 -48619612 - L2c LINE L2 -100 3287 3234 6 1377 722 190 35 7 chr5 103918229 103918372 -48618887 + B1_Mur1 SINE Alu 2 148 -1 6 1377 306 0 0 0 chr5 103919449 103919483 -48617776 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1377 221 314 0 37 chr5 103922797 103922906 -48614353 + C-rich Low_complexity Low_complexity 3 107 0 6 1377 27 29 0 0 chr5 103922977 103923011 -48614248 + AT_rich Low_complexity Low_complexity 1 34 0 6 1377 849 201 0 26 chr5 103923144 103923158 -48614101 - B3 SINE B2 -27 189 176 6 1377 1144 75 7 0 chr5 103923158 103923304 -48613955 - B1_Mus2 SINE Alu 0 147 1 6 1377 849 201 0 26 chr5 103923304 103923478 -48613781 - B3 SINE B2 -41 175 7 6 1377 748 195 41 41 chr5 103924042 103924213 -48613046 + B2_Mm2 SINE B2 1 171 -24 6 1377 468 35 0 0 chr5 103924655 103924713 -48612546 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1377 596 157 34 0 chr5 103925101 103925236 -48612023 - B1_Mur3 SINE Alu -6 144 5 6 1377 207 0 0 0 chr5 103926877 103926900 -48610359 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1377 726 152 0 0 chr5 103926900 103927025 -48610234 + CT-rich Low_complexity Low_complexity 3 127 0 6 1377 21 57 0 0 chr5 103927474 103927509 -48609750 + AT_rich Low_complexity Low_complexity 1 35 0 6 1377 505 316 91 40 chr5 103927659 103928009 -48609250 - Lx9 LINE L1 -219 7425 7058 6 1377 285 265 51 0 chr5 103931543 103931641 -48605618 - PB1D9 SINE Alu -16 104 2 6 1377 297 68 0 0 chr5 103931815 103931859 -48605400 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1377 333 244 24 12 chr5 103932091 103932174 -48605085 - B4 SINE B4 -3 289 206 6 1377 392 250 156 67 chr5 103932175 103932355 -48604904 - B3A SINE B2 0 198 3 6 1377 413 235 75 150 chr5 103932356 103932596 -48604663 - B4 SINE B4 -64 228 7 6 1377 975 240 31 0 chr5 103932880 103933072 -48604187 - B3 SINE B2 -17 199 2 6 1377 638 198 18 0 chr5 103933516 103933653 -48603606 + B1_Mur1 SINE Alu 1 142 -7 6 1377 397 340 72 28 chr5 103933691 103933961 -48603298 + B4A SINE B4 10 291 -1 6 1377 401 0 20 0 chr5 103933984 103934033 -48603226 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1377 1589 21 0 85 chr5 103935887 103936098 -48601161 + B2_Mm1a SINE B2 1 193 0 6 1377 594 267 111 0 chr5 103936583 103936755 -48600504 + B3 SINE B2 2 192 -24 6 1377 645 238 26 0 chr5 103936786 103936937 -48600322 - B3 SINE B2 -15 201 47 6 1377 472 116 23 0 chr5 103937365 103937451 -48599808 + (GA)n Simple_repeat Simple_repeat 1 88 0 6 1377 297 51 0 0 chr5 103938383 103938422 -48598837 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 6 1377 936 41 0 0 chr5 103939495 103939618 -48597641 + B1_Mm SINE Alu 25 147 0 6 1378 351 0 0 0 chr5 103940208 103940247 -48597012 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1378 457 371 25 20 chr5 103940749 103940950 -48596309 + B4A SINE B4 2 203 -89 6 1378 215 311 0 0 chr5 103940967 103941028 -48596231 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 6 1378 455 206 62 0 chr5 103941252 103941349 -48595910 + PB1D9 SINE Alu 9 111 -9 6 1378 207 114 0 0 chr5 103943031 103943066 -48594193 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 1378 681 200 190 22 chr5 103944516 103944695 -48592564 + B3 SINE B2 5 213 -3 6 1378 193 214 107 0 chr5 103944997 103945053 -48592206 - MIR SINE MIR -36 226 165 6 1378 2309 138 33 83 chr5 103945506 103945989 -48591270 + RMER6B LTR ERVK 1 459 -2 6 1378 932 142 7 13 chr5 103946171 103946321 -48590938 + B1_Mur3 SINE Alu 1 149 0 6 1378 300 119 0 0 chr5 103948592 103948651 -48588608 + (C)n Simple_repeat Simple_repeat 1 59 0 6 1378 216 64 64 0 chr5 103948712 103948759 -48588500 + (TTTTTG)n Simple_repeat Simple_repeat 2 51 0 6 1378 1913 164 103 3 chr5 103949287 103949665 -48587594 + MTC LTR MaLR 2 417 -4 6 1378 3915 116 53 23 chr5 103950121 103950700 -48586559 + Lx LINE L1 5973 6557 -97 6 1378 198 0 0 0 chr5 103950700 103950722 -48586537 + (GGGA)n Simple_repeat Simple_repeat 1 22 0 6 1378 3915 116 53 23 chr5 103950722 103950797 -48586462 + Lx LINE L1 6558 6646 -8 6 1378 595 259 110 19 chr5 103951396 103951605 -48585654 + B4 SINE B4 50 277 -15 6 1378 317 162 15 0 chr5 103951808 103951876 -48585383 + C-rich Low_complexity Low_complexity 3 71 0 6 1378 34 65 0 0 chr5 103952001 103952063 -48585196 + AT_rich Low_complexity Low_complexity 1 62 0 6 1378 401 278 90 32 chr5 103952091 103952247 -48585012 + B3 SINE B2 52 216 0 6 1378 207 100 0 0 chr5 103952279 103952309 -48584950 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 6 1378 809 159 7 0 chr5 103952309 103952454 -48584805 - B1_Mus2 SINE Alu 0 147 2 6 1378 304 344 47 8 chr5 103953291 103953420 -48583839 + B1F SINE Alu 3 136 -13 7 1378 644 254 14 55 chr5 103953818 103954035 -48583224 - B3 SINE B2 -7 209 2 7 1378 330 26 0 0 chr5 103954528 103954567 -48582692 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1378 217 347 121 40 chr5 103955675 103955873 -48581386 - MIRb SINE MIR -49 219 6 7 1378 757 351 68 8 chr5 103956298 103956697 -48580562 + Tigger7 DNA MER2_type 7 429 -2062 7 1378 225 65 0 0 chr5 103956995 103957026 -48580233 + (TC)n Simple_repeat Simple_repeat 1 31 0 7 1378 2085 236 112 20 chr5 103957032 103957638 -48579621 - Lx7 LINE L1 -230 7466 6805 7 1378 235 231 123 0 chr5 103958004 103958069 -48579190 - ID4 SINE ID -8 75 3 7 1378 548 253 147 31 chr5 103959850 103960013 -48577246 - B3A SINE B2 -16 182 1 7 1378 1403 257 68 75 chr5 103960262 103961071 -48576188 + RMER12 LTR ERVK 1 773 -1075 7 1378 450 125 0 0 chr5 103961211 103961291 -48575968 + (TG)n Simple_repeat Simple_repeat 2 81 0 7 1378 308 198 72 113 chr5 103961375 103961472 -48575787 + RMER12 LTR ERVK 990 1082 -240 7 1378 213 39 0 0 chr5 103961497 103961523 -48575736 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 7 1378 1166 98 46 52 chr5 103961526 103961720 -48575539 - B2_Mm2 SINE B2 -1 194 2 7 1378 405 141 77 0 chr5 103961748 103961826 -48575433 + RMER12 LTR ERVK 1104 1187 -135 7 1378 1074 53 23 0 chr5 103962929 103963062 -48574197 + B1_Mm SINE Alu 3 138 -9 7 1378 207 0 0 0 chr5 103963062 103963085 -48574174 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1378 447 270 37 6 chr5 103963892 103964056 -48573203 + MER113 DNA MER1_type 156 324 -197 7 1378 1282 89 6 22 chr5 103964090 103964273 -48572986 - B2_Mm2 SINE B2 -14 181 2 7 1378 21 71 0 0 chr5 103964286 103964328 -48572931 + AT_rich Low_complexity Low_complexity 1 42 0 7 1378 542 93 0 11 chr5 103964858 103964945 -48572314 + (TCC)n Simple_repeat Simple_repeat 1 86 0 7 1378 443 223 175 19 chr5 103965253 103965413 -48571846 - B3 SINE B2 -31 185 1 7 1378 792 249 65 0 chr5 103966235 103966420 -48570839 - B3 SINE B2 -9 207 11 7 1378 1681 26 0 15 chr5 103969359 103969554 -48567705 + B2_Mm1t SINE B2 1 192 -1 7 1378 233 241 133 33 chr5 103971142 103971232 -48566027 + PB1D10 SINE Alu 7 105 -12 7 1378 535 213 89 8 chr5 103971899 103972022 -48565237 + ID_B1 SINE B4 91 223 -1 7 1378 225 132 0 0 chr5 103972778 103972816 -48564443 + (TTG)n Simple_repeat Simple_repeat 2 39 0 7 1378 647 191 52 85 chr5 103973402 103973608 -48563651 + B3A SINE B2 7 215 -1 7 1378 220 246 30 15 chr5 103973608 103973674 -48563585 - L4 LINE RTE -178 1851 1785 7 1378 790 180 7 0 chr5 103975056 103975195 -48562064 + B1_Mur3 SINE Alu 10 149 0 7 1378 780 111 17 0 chr5 103975691 103975808 -48561451 + B2_Mm2 SINE B2 1 119 -76 7 1378 188 212 15 0 chr5 103976918 103976984 -48560275 + (CA)n Simple_repeat Simple_repeat 1 67 0 7 1378 216 0 0 0 chr5 103978216 103978240 -48559019 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 7 1378 21 0 0 0 chr5 103978284 103978305 -48558954 + AT_rich Low_complexity Low_complexity 1 21 0 7 1378 229 259 0 0 chr5 103978372 103978426 -48558833 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1378 327 229 324 6 chr5 103978848 103979012 -48558247 - B3A SINE B2 0 216 1 7 1378 204 125 0 0 chr5 103979948 103979980 -48557279 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7 1378 395 244 23 38 chr5 103980998 103981130 -48556129 + B1F1 SINE Alu 9 138 -11 7 1378 404 235 63 49 chr5 103982050 103982110 -48555149 - B1F SINE Alu -3 146 84 7 1378 3794 125 151 2 chr5 103982110 103982751 -48554508 - RMER19A LTR ERVK 0 737 1 7 1378 404 235 63 49 chr5 103982751 103982833 -48554426 - B1F SINE Alu -66 83 2 7 1378 225 279 28 19 chr5 103983102 103983208 -48554051 + BC1_Mm scRNA scRNA 16 122 -30 7 1378 320 222 42 0 chr5 103983262 103983334 -48553925 + ID4_ SINE ID 5 79 -4 7 1378 303 143 18 0 chr5 103983561 103983617 -48553642 - HAL1-3A_ME LINE L1 -823 2035 1979 7 1378 455 276 61 87 chr5 103985858 103986088 -48551171 + B4A SINE B4 69 292 0 7 1378 205 299 33 9 chr5 103986153 103986364 -48550895 + (CATG)n Simple_repeat Simple_repeat 1 216 0 7 1378 440 193 99 18 chr5 103986445 103986556 -48550703 - PB1D9 SINE Alu 0 120 1 7 1378 251 233 70 104 chr5 103987042 103987157 -48550102 + MT2B LTR ERVL 154 264 -337 7 1378 505 236 65 8 chr5 103987067 103987191 -48550068 + B1_Mur4 SINE Alu 19 149 -1 7 1378 416 226 319 0 chr5 103987263 103987407 -48549852 + B3A SINE B2 5 194 -22 7 1378 21 0 0 0 chr5 103987423 103987444 -48549815 + AT_rich Low_complexity Low_complexity 1 21 0 7 1378 1130 72 0 46 chr5 103987453 103987628 -48549631 + B2_Mm2 SINE B2 2 168 -27 7 1378 189 94 0 0 chr5 103989989 103990021 -48547238 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1378 453 278 32 23 chr5 103990312 103990498 -48546761 + B4A SINE B4 1 230 -62 7 1378 273 118 0 0 chr5 103990555 103990606 -48546653 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1378 1169 116 22 6 chr5 103990688 103990870 -48546389 + B2_Mm2 SINE B2 2 186 -9 7 1378 308 236 52 89 chr5 103991678 103991813 -48545446 + B3A SINE B2 70 199 -17 7 1378 375 296 0 14 chr5 103991815 103992105 -48545154 + (CA)n Simple_repeat Simple_repeat 1 285 0 7 1378 305 248 38 83 chr5 103992499 103992631 -48544628 + RSINE1 SINE B4 30 155 -10 7 1378 297 294 54 11 chr5 103992712 103992805 -48544454 + RSINE1 SINE B4 63 159 -6 7 1378 267 54 0 0 chr5 103993535 103993572 -48543687 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 7 1378 237 274 26 52 chr5 103994634 103994711 -48542548 - B4A SINE B4 -2 290 216 7 1378 1269 245 24 59 chr5 103994735 103995108 -48542151 - Lx5 LINE L1 -2 7048 6689 7 1378 3508 260 137 23 chr5 103995157 103996458 -48540801 - Lx8 LINE L1 -12 7461 6013 7 1378 997 198 28 33 chr5 103997216 103997430 -48539829 + B3 SINE B2 1 213 -3 7 1378 235 303 9 100 chr5 103997851 103997961 -48539298 + PB1D10 SINE Alu 6 105 -12 7 1378 481 294 56 0 chr5 103997975 103998135 -48539124 + ID_B1 SINE B4 1 169 -55 7 1378 261 303 0 0 chr5 104000118 104000184 -48537075 - MLT1D LTR MaLR -23 572 507 1 1378 3484 66 2 2 chr5 104000444 104000886 -48536373 + L1_Mus2 LINE L1 6125 6566 0 2 1378 727 279 159 31 chr5 104001006 104001358 -48535901 - MLT1D LTR MaLR -1 504 108 1 1378 290 340 47 0 chr5 104001578 104001684 -48535575 + ID_B1 SINE B4 84 194 -30 3 1378 227 253 0 112 chr5 104001663 104001752 -48535507 - LTR36 LTR ERV1 -507 104 26 4 1378 235 353 67 0 chr5 104001684 104001696 -48535563 + B1_Mur3 SINE Alu 3 128 -21 5 1378 355 349 39 39 chr5 104002599 104002754 -48534505 - MIR SINE MIR -73 189 35 6 1378 600 189 0 54 chr5 104003672 104003784 -48533475 - PB1D7 SINE Alu 0 120 15 7 1378 21 0 0 0 chr5 104003799 104003820 -48533439 + AT_rich Low_complexity Low_complexity 1 21 0 8 1378 722 168 30 22 chr5 104003821 104003955 -48533304 - B1_Mur4 SINE Alu 0 150 16 9 1378 317 233 78 0 chr5 104003951 104004041 -48533218 + ID_B1 SINE B4 115 211 -13 1 1378 1584 212 32 117 chr5 104006212 104006777 -48530482 - Lx7 LINE L1 0 7696 7180 1 1378 1748 189 76 74 chr5 104006775 104007248 -48530011 + Lx7 LINE L1 6695 7168 -528 1 1378 331 274 128 0 chr5 104007470 104007572 -48529687 + PB1D10 SINE Alu 3 117 0 1 1378 24 32 0 0 chr5 104008344 104008375 -48528884 + AT_rich Low_complexity Low_complexity 1 31 0 1 1378 1021 243 14 9 chr5 104009169 104009389 -48527870 + ID_B1 SINE B4 1 221 -3 1 1378 1209 120 43 0 chr5 104009979 104010163 -48527096 + B2_Mm2 SINE B2 2 193 -2 1 1378 213 121 0 0 chr5 104010163 104010196 -48527063 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 1 1378 1181 82 0 0 chr5 104010355 104010502 -48526757 - B1_Mus2 SINE Alu 0 147 1 1 1378 23 78 0 0 chr5 104010887 104010938 -48526321 + AT_rich Low_complexity Low_complexity 1 51 0 1 1378 227 159 116 74 chr5 104010965 104011060 -48526199 - MLT1B LTR MaLR -162 228 130 1 1378 1477 185 107 25 chr5 104011207 104011534 -48525725 + RMER4A LTR ERVK 113 466 0 2 1378 615 197 96 24 chr5 104011904 104012029 -48525230 - B1_Mur1 SINE Alu -2 147 14 2 1378 440 207 0 0 chr5 104012275 104012357 -48524902 + RSINE1 SINE B4 1 82 -83 2 1378 725 226 7 7 chr5 104012472 104012610 -48524649 - B1_Mur1 SINE Alu -8 141 4 2 1378 658 196 196 27 chr5 104012664 104012838 -48524421 + B3 SINE B2 1 206 -10 2 1378 216 0 0 0 chr5 104012838 104012862 -48524397 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2 1378 232 284 100 54 chr5 104012871 104012907 -48524352 + RLTR25A LTR ERVK 445 580 -523 2 1378 584 149 64 0 chr5 104012907 104013001 -48524258 + B1_Mur3 SINE Alu 9 108 -41 2 1378 577 282 54 17 chr5 104013198 104013381 -48523878 + B3 SINE B2 1 182 -13 2 1378 475 282 0 35 chr5 104013796 104013910 -48523349 + B3 SINE B2 6 115 -101 2 1378 450 79 0 0 chr5 104013914 104013977 -48523282 + (CA)n Simple_repeat Simple_repeat 2 64 0 3 1378 253 309 79 40 chr5 104014138 104014239 -48523020 + B3 SINE B2 87 191 -25 2 1378 215 270 31 16 chr5 104014298 104014362 -48522897 + L4 LINE RTE 711 775 -1254 3 1378 671 312 13 59 chr5 104014572 104014810 -48522449 + B4 SINE B4 52 278 -14 3 1378 1265 78 77 16 chr5 104015076 104015258 -48522001 + B2_Mm2 SINE B2 1 193 -2 3 1378 461 250 9 0 chr5 104015276 104015384 -48521875 - PB1 SINE Alu -14 113 5 3 1378 348 326 120 7 chr5 104015472 104015614 -48521645 - RSINE1 SINE B4 -5 160 3 3 1378 2216 142 34 3 chr5 104017314 104017668 -48519591 - ORR1B2 LTR MaLR 0 367 3 3 1378 228 219 12 141 chr5 104017851 104017875 -48519384 - YREP_Mm Unknown Unknown -1486 326 314 3 1378 239 296 54 11 chr5 104017875 104017965 -48519294 + PB1D10 SINE Alu 3 98 -51 3 1378 188 264 40 121 chr5 104018392 104018491 -48518768 + MIRm SINE MIR 160 250 -26 3 1378 420 37 0 0 chr5 104018977 104019031 -48518228 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1378 288 264 0 103 chr5 104019056 104019153 -48518106 + B1_Mur1 SINE Alu 62 148 -1 4 1378 24 0 0 0 chr5 104019383 104019407 -48517852 + AT_rich Low_complexity Low_complexity 1 24 0 4 1378 656 274 15 21 chr5 104020431 104020595 -48516664 - ID_B1 SINE B4 -56 236 85 4 1378 189 107 0 0 chr5 104020746 104020774 -48516485 + (TTG)n Simple_repeat Simple_repeat 2 29 0 4 1378 817 152 21 35 chr5 104020774 104020917 -48516342 - B1_Mur3 SINE Alu -5 144 4 4 1378 818 274 43 14 chr5 104021305 104021583 -48515676 - B4A SINE B4 -3 289 4 4 1378 194 0 0 37 chr5 104021595 104021622 -48515637 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4 1378 358 279 39 0 chr5 104022275 104022379 -48514880 - PB1D10 SINE Alu -9 108 1 4 1378 22 0 0 0 chr5 104022992 104023014 -48514245 + AT_rich Low_complexity Low_complexity 1 22 0 4 1378 180 111 0 0 chr5 104023148 104023175 -48514084 + (TATG)n Simple_repeat Simple_repeat 3 29 0 5 1378 315 250 67 22 chr5 104023763 104023853 -48513406 - PB1D10 SINE Alu -1 116 23 5 1378 22 0 0 0 chr5 104024013 104024035 -48513224 + AT_rich Low_complexity Low_complexity 1 22 0 5 1378 406 248 279 46 chr5 104024043 104024280 -48512979 + B4 SINE B4 1 292 0 5 1378 328 203 13 39 chr5 104024291 104024368 -48512891 + HAL1-3A_ME LINE L1 1976 2050 -808 5 1378 202 248 167 28 chr5 104024896 104025004 -48512255 - L2b LINE L2 -5 3370 3248 5 1378 463 188 23 34 chr5 104025155 104025243 -48512016 + B1_Mur1 SINE Alu 61 147 -2 5 1378 188 286 170 53 chr5 104025670 104025858 -48511401 - L2b LINE L2 -541 2878 2669 5 1378 26 82 0 0 chr5 104026209 104026270 -48510989 + AT_rich Low_complexity Low_complexity 1 61 0 5 1378 365 241 38 0 chr5 104026376 104026455 -48510804 + ID2 SINE ID 1 82 -1 5 1378 1079 166 35 110 chr5 104028661 104028792 -48508467 + RMER17C LTR ERVK 92 187 -223 5 1378 660 59 0 0 chr5 104028792 104028877 -48508382 + (TTC)n Simple_repeat Simple_repeat 1 85 0 6 1378 1079 166 35 110 chr5 104028877 104029090 -48508169 + RMER17C LTR ERVK 188 410 0 5 1378 587 286 125 41 chr5 104029231 104029574 -48507685 + L1MA5 LINE L1 5491 5862 -438 6 1378 282 333 101 32 chr5 104029771 104029831 -48507428 + ID_B1 SINE B4 24 94 -130 6 1378 362 204 243 0 chr5 104029831 104029934 -48507325 + B1F SINE Alu 1 128 -21 6 1378 8375 26 0 0 chr5 104029986 104030915 -48506344 - RLTR13B3 LTR ERVK 0 929 1 6 1378 701 148 43 1 chr5 104031139 104031274 -48505985 - B1_Mus1 SINE Alu -5 145 1 6 1378 942 72 0 23 chr5 104031284 104031413 -48505846 - B1_Mm SINE Alu 0 147 22 6 1378 320 246 66 113 chr5 104031286 104031437 -48505822 - B4A SINE B4 -68 224 81 6 1378 570 272 158 5 chr5 104031605 104031808 -48505451 + 7SK RNA RNA 1 234 -97 6 1378 1180 238 161 25 chr5 104032118 104032484 -48504775 - MTC LTR MaLR -2 419 4 6 1378 1341 37 0 0 chr5 104033026 104033189 -48504070 + L1Md_A LINE L1 6420 6582 0 7 1378 186 43 0 0 chr5 104033205 104033228 -48504031 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1378 1081 163 11 0 chr5 104033342 104033520 -48503739 + B2_Mm1t SINE B2 2 181 -12 7 1378 249 45 0 83 chr5 104033591 104033639 -48503620 + B2_Mm2 SINE B2 143 186 -9 7 1378 322 320 0 0 chr5 104033701 104033779 -48503480 + ID4_ SINE ID 2 79 -4 7 1378 241 292 14 27 chr5 104033713 104033787 -48503472 + B4 SINE B4 14 86 -206 7 1378 238 337 11 108 chr5 104033961 104034054 -48503205 + RSINE1 SINE B4 82 165 0 7 1378 22 0 0 0 chr5 104034071 104034093 -48503166 + AT_rich Low_complexity Low_complexity 1 22 0 7 1378 298 289 25 41 chr5 104034532 104034681 -48502578 + PB1D10 SINE Alu 1 148 -1 7 1378 3190 96 42 2 chr5 104035910 104036007 -48501252 + MusHAL1 LINE L1 1568 1664 -1048 7 1378 1397 84 0 21 chr5 104036007 104036201 -48501058 + B2_Mm2 SINE B2 1 190 -5 8 1378 3190 96 42 2 chr5 104036201 104036602 -48500657 + MusHAL1 LINE L1 1665 2084 -628 7 1378 376 35 0 50 chr5 104036669 104036729 -48500530 + (GAAA)n Simple_repeat Simple_repeat 1 57 0 8 1378 197 384 14 0 chr5 104036795 104036868 -48500391 - L2a LINE L2 0 3426 3353 8 1378 227 286 146 31 chr5 104036907 104037025 -48500234 + RLTR47_MM LTR ERV1 139 271 -261 8 1378 1104 231 25 138 chr5 104037025 104037432 -48499827 + ORR1D2 LTR MaLR 1 361 -9 8 1378 279 319 131 8 chr5 104039233 104039383 -48497876 + MIRb SINE MIR 29 199 -69 8 1378 246 289 26 0 chr5 104039747 104039823 -48497436 - L1M5 LINE L1 -352 5772 5695 8 1378 283 47 23 23 chr5 104039910 104039954 -48497305 + PB1D10 SINE Alu 64 107 -10 8 1378 2140 161 25 62 chr5 104040409 104040501 -48496758 + MTC LTR MaLR 1 76 -345 8 1378 1541 26 21 16 chr5 104040501 104040693 -48496566 + B2_Mm2 SINE B2 2 194 -1 8 1378 2140 161 25 62 chr5 104040693 104041037 -48496222 + MTC LTR MaLR 77 421 0 8 1378 297 253 0 0 chr5 104041208 104041295 -48495964 + (CA)n Simple_repeat Simple_repeat 2 88 0 9 1378 253 271 0 0 chr5 104041307 104041366 -48495893 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1378 255 316 31 109 chr5 104041712 104041840 -48495419 - Tigger7 DNA MER2_type -7 2484 2367 9 1378 792 195 150 20 chr5 104041962 104042164 -48495095 - MTD LTR MaLR -14 405 196 9 1378 35 34 0 17 chr5 104042167 104042204 -48495055 + AT_rich Low_complexity Low_complexity 1 37 0 9 1378 1232 55 0 0 chr5 104042204 104042350 -48494909 + B1_Mm SINE Alu 2 147 0 9 1378 35 34 0 17 chr5 104042350 104042372 -48494887 + AT_rich Low_complexity Low_complexity 1 22 0 9 1378 473 330 106 13 chr5 104042462 104042698 -48494561 - Lx8 LINE L1 0 7473 7216 9 1378 768 277 29 19 chr5 104042699 104042905 -48494354 - MTD LTR MaLR -207 212 5 9 1378 395 324 81 29 chr5 104043006 104043216 -48494043 - Tigger7 DNA MER2_type -2270 221 1 9 1378 26 0 0 0 chr5 104043363 104043389 -48493870 + AT_rich Low_complexity Low_complexity 1 26 0 9 1378 210 329 13 52 chr5 104044010 104044087 -48493172 + B1F2 SINE Alu 12 85 -64 9 1378 600 101 0 0 chr5 104044117 104044206 -48493053 + (TC)n Simple_repeat Simple_repeat 2 90 0 9 1378 313 367 76 68 chr5 104044417 104044771 -48492488 + ORR1E LTR MaLR 1 357 -2 1 1378 463 284 0 18 chr5 104044994 104045105 -48492154 + PB1D10 SINE Alu 9 117 0 1 1378 24 0 0 0 chr5 104045144 104045168 -48492091 + AT_rich Low_complexity Low_complexity 1 24 0 1 1378 1195 47 14 0 chr5 104045180 104045328 -48491931 + B1_Mur4 SINE Alu 1 150 0 1 1378 225 0 0 0 chr5 104045328 104045353 -48491906 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1378 392 218 24 127 chr5 104045374 104045500 -48491759 - B1F1 SINE Alu -1 116 4 1 1378 383 234 196 0 chr5 104045396 104045503 -48491756 - ID_B1 SINE B4 -15 209 82 1 1378 265 283 129 11 chr5 104047134 104047227 -48490032 + MIR SINE MIR 10 113 -149 1 1378 626 198 0 0 chr5 104047572 104047683 -48489576 + PB1D9 SINE Alu 2 112 -8 1 1378 285 29 0 0 chr5 104047683 104047717 -48489542 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 1 1378 1485 59 5 5 chr5 104047732 104047920 -48489339 + B2_Mm2 SINE B2 3 190 -5 1 1378 195 69 0 0 chr5 104048631 104048660 -48488599 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1378 740 185 30 0 chr5 104048660 104048795 -48488464 + B1_Mur1 SINE Alu 3 141 -8 1 1378 216 0 0 0 chr5 104049156 104049180 -48488079 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1378 22 0 0 0 chr5 104049218 104049240 -48488019 + AT_rich Low_complexity Low_complexity 1 22 0 1 1378 347 231 55 55 chr5 104050409 104050510 -48486749 + ORR1E LTR MaLR 10 110 -249 1 1378 957 216 11 21 chr5 104050510 104050699 -48486560 + ID_B1 SINE B4 2 188 -36 1 1378 485 307 101 62 chr5 104050697 104050954 -48486305 + ORR1E LTR MaLR 87 353 -6 1 1378 186 43 0 0 chr5 104050954 104050977 -48486282 + (GAAAA)n Simple_repeat Simple_repeat 4 26 0 1 1378 632 253 39 30 chr5 104051093 104051306 -48485953 + ID_B1 SINE B4 80 288 -4 1 1378 436 250 29 0 chr5 104051659 104051763 -48485496 + B1_Mur2 SINE Alu 35 141 -8 1 1378 282 255 111 10 chr5 104051917 104052016 -48485243 + PB1D9 SINE Alu 11 119 -1 1 1378 501 17 0 0 chr5 104052078 104052136 -48485123 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1378 244 338 7 58 chr5 104052361 104052499 -48484760 + G-rich Low_complexity Low_complexity 1 131 0 1 1378 586 287 7 20 chr5 104052599 104052745 -48484514 + ID_B1 SINE B4 80 223 -1 1 1378 442 360 92 18 chr5 104053063 104053281 -48483978 + MLT1H LTR MaLR 9 242 -307 1 1378 180 0 0 0 chr5 104053318 104053338 -48483921 + (GGGAGA)n Simple_repeat Simple_repeat 5 24 0 1 1378 324 188 0 0 chr5 104054239 104054303 -48482956 + GA-rich Low_complexity Low_complexity 2 65 0 1 1378 189 342 24 60 chr5 104054725 104054809 -48482450 + MIR3 SINE MIR 106 186 -22 1 1378 318 152 16 33 chr5 104055023 104055084 -48482175 + B1_Mur4 SINE Alu 1 60 -90 1 1378 255 154 0 0 chr5 104055177 104055242 -48482017 + GA-rich Low_complexity Low_complexity 4 68 0 1 1378 632 120 0 0 chr5 104055244 104055344 -48481915 + B1_Mus2 SINE Alu 42 141 -6 1 1378 282 56 0 0 chr5 104055346 104055382 -48481877 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1378 332 258 15 57 chr5 104055382 104055487 -48481772 + B1F SINE Alu 40 141 -8 1 1378 195 307 107 0 chr5 104055578 104055653 -48481606 - MIRb SINE MIR 0 268 186 1 1378 1175 198 5 5 chr5 104055667 104055875 -48481384 + B3 SINE B2 2 209 -7 1 1378 599 176 176 0 chr5 104055910 104056035 -48481224 + B1_Mus2 SINE Alu 1 147 0 1 1378 538 230 26 0 chr5 104056100 104056213 -48481046 + PB1D10 SINE Alu 2 117 0 1 1378 279 0 0 0 chr5 104056943 104056974 -48480285 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 1 1378 621 200 0 0 chr5 104059494 104059609 -48477650 + B4A SINE B4 112 226 -66 1 1378 4476 16 2 0 chr5 104059613 104060105 -48477154 - MT2_Mm LTR ERVL 0 493 1 1 1378 321 0 0 0 chr5 104060105 104060143 -48477116 - MERVL-int LTR ERVL 0 5485 5448 1 1378 342 179 46 35 chr5 104060143 104060230 -48477029 - ORR1A3-int LTR MaLR -1323 640 553 1 1378 41395 16 14 0 chr5 104060230 104065518 -48471741 - MERVL-int LTR ERVL -125 5360 1 1 1378 4476 16 2 0 chr5 104065518 104066010 -48471249 - MT2_Mm LTR ERVL 0 493 1 1 1378 279 232 0 42 chr5 104066081 104066153 -48471106 + PB1D9 SINE Alu 1 69 -51 1 1378 437 174 55 0 chr5 104066983 104067092 -48470167 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 1378 437 181 34 28 chr5 104067094 104067270 -48469989 + (CATA)n Simple_repeat Simple_repeat 4 180 0 1 1378 480 233 0 10 chr5 104067900 104068004 -48469255 + PB1D7 SINE Alu 6 108 -12 1 1378 456 100 38 0 chr5 104068147 104068227 -48469032 - L1Md_F2 LINE L1 0 6582 6500 1 1378 1292 111 21 0 chr5 104068270 104068460 -48468799 + B2_Mm2 SINE B2 2 195 0 1 1378 372 190 88 20 chr5 104068789 104068891 -48468368 + B1F SINE Alu 5 113 -36 1 1378 447 204 0 55 chr5 104069261 104069370 -48467889 + PB1D7 SINE Alu 9 111 -9 1 1378 213 47 0 65 chr5 104070249 104070295 -48466964 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 1 1378 626 151 11 175 chr5 104070316 104070493 -48466766 - B1_Mur3 SINE Alu 0 149 2 1 1378 1631 36 5 0 chr5 104070507 104070699 -48466560 - B2_Mm1t SINE B2 0 193 1 1 172 1099 285 45 21 chr5 104070932 104071312 -48465947 - Lx8 LINE L1 -458 7015 6627 1 1379 1770 174 70 50 chr5 104071314 104071643 -48465616 + MTC LTR MaLR 6 347 -74 1 1379 1295 102 21 0 chr5 104071643 104071829 -48465430 + B2_Mm1a SINE B2 1 190 -3 1 1379 1770 174 70 50 chr5 104071829 104071899 -48465360 + MTC LTR MaLR 348 413 -8 1 1379 4845 154 204 26 chr5 104071902 104072968 -48464291 + MTC-int LTR MaLR 2 1256 -2 1 1379 812 182 30 18 chr5 104072970 104073138 -48464121 + MTC LTR MaLR 1 170 -251 1 1379 557 165 207 0 chr5 104073155 104073276 -48463983 + B1_Mur4 SINE Alu 5 150 0 1 1379 1289 101 67 0 chr5 104073291 104073499 -48463760 + MTC LTR MaLR 200 421 0 1 1379 1312 284 120 33 chr5 104073645 104074304 -48462955 - L1_Mur3 LINE L1 -1973 3907 3192 1 1379 439 297 93 0 chr5 104074440 104074558 -48462701 + RSINE1 SINE B4 20 148 -17 1 1379 1225 34 0 14 chr5 104075235 104075383 -48461876 - B1_Mus2 SINE Alu 0 147 2 1 1379 21 57 0 0 chr5 104075759 104075794 -48461465 + AT_rich Low_complexity Low_complexity 1 35 0 1 1379 525 32 0 0 chr5 104075794 104075857 -48461402 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1379 250 216 12 129 chr5 104076402 104076487 -48460772 + MT2B LTR ERVL 163 237 -364 1 1379 452 221 96 0 chr5 104076411 104076515 -48460744 + B1_Mur2 SINE Alu 6 119 -30 1 1379 371 253 0 0 chr5 104076508 104076595 -48460664 - B3 SINE B2 -128 88 2 1 1379 1185 14 50 0 chr5 104076874 104077014 -48460245 + B1_Mus2 SINE Alu 1 147 0 1 1379 195 42 0 0 chr5 104077014 104077038 -48460221 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1379 25 0 0 0 chr5 104077333 104077358 -48459901 + AT_rich Low_complexity Low_complexity 1 25 0 1 1379 660 26 0 0 chr5 104077974 104078052 -48459207 + (TAA)n Simple_repeat Simple_repeat 1 78 0 1 1379 1203 56 0 0 chr5 104078061 104078204 -48459055 + B1_Mus2 SINE Alu 3 145 -2 1 1379 243 88 0 0 chr5 104078204 104078238 -48459021 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1 1379 225 0 0 0 chr5 104078836 104078861 -48458398 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 1 1379 210 150 0 0 chr5 104078861 104078901 -48458358 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 1 1379 799 166 14 7 chr5 104078904 104079044 -48458215 - B1_Mur1 SINE Alu -8 141 1 1 1379 459 233 57 21 chr5 104079110 104079253 -48458006 + B1F2 SINE Alu 3 149 0 1 1379 717 194 0 0 chr5 104079257 104079381 -48457878 + B3 SINE B2 1 124 -92 1 1379 369 322 88 27 chr5 104079464 104079611 -48457648 + RSINE1 SINE B4 8 163 -2 1 1379 855 133 26 11 chr5 104079678 104080028 -48457231 + (TAGA)n Simple_repeat Simple_repeat 1 355 0 1 1379 451 198 17 0 chr5 104080051 104080223 -48457036 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 1 1379 878 205 80 0 chr5 104080245 104080445 -48456814 + B3 SINE B2 1 216 0 1 1379 1427 69 26 0 chr5 104080449 104080638 -48456621 + B2_Mm2 SINE B2 1 194 -1 1 1379 1214 124 11 0 chr5 104080882 104081059 -48456200 + B2_Mm1t SINE B2 2 180 -13 1 1379 348 95 367 31 chr5 104081122 104081220 -48456039 + B2_Mm2 SINE B2 47 177 -18 1 1379 419 333 27 20 chr5 104081416 104081563 -48455696 + RSINE1 SINE B4 11 158 -7 1 1379 462 36 0 0 chr5 104081563 104081619 -48455640 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1379 345 265 0 12 chr5 104081690 104081774 -48455485 + ID2 SINE ID 1 83 0 1 1379 341 243 0 13 chr5 104081878 104081953 -48455306 - PB1D10 SINE Alu -33 84 11 1 1379 421 246 137 38 chr5 104082169 104082300 -48454959 + B1_Mur1 SINE Alu 1 144 -5 1 1379 379 174 0 23 chr5 104082300 104082388 -48454871 + GA-rich Low_complexity Low_complexity 2 87 0 1 1379 215 270 16 0 chr5 104082785 104082848 -48454411 + (TA)n Simple_repeat Simple_repeat 2 65 0 1 1379 519 229 218 62 chr5 104083022 104083329 -48453930 + MTD LTR MaLR 10 364 -55 1 1379 666 236 92 25 chr5 104083354 104083550 -48453709 - B3 SINE B2 -7 209 1 1 1379 568 264 75 15 chr5 104083585 104083785 -48453474 + B3 SINE B2 4 215 -1 1 1379 273 57 0 0 chr5 104083899 104083934 -48453325 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1379 217 25 100 0 chr5 104084317 104084357 -48452902 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 1 1379 448 203 149 45 chr5 104085291 104085425 -48451834 - B1F SINE Alu 0 149 2 1 1379 597 28 0 0 chr5 104085454 104085525 -48451734 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1379 525 272 0 0 chr5 104085877 104086002 -48451257 + B3 SINE B2 54 178 -38 1 1379 279 263 26 0 chr5 104086005 104086081 -48451178 + MLT1F1 LTR MaLR 410 487 -82 1 1379 519 268 62 19 chr5 104086125 104086285 -48450974 + ID_B1 SINE B4 55 221 -3 1 1379 24 32 0 0 chr5 104086388 104086419 -48450840 + AT_rich Low_complexity Low_complexity 1 31 0 1 1379 1268 104 5 42 chr5 104086423 104086614 -48450645 - B2_Mm1a SINE B2 -5 188 5 1 1379 186 43 0 0 chr5 104086614 104086637 -48450622 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 2 1379 592 66 269 19 chr5 104086655 104086763 -48450496 - B1_Mus1 SINE Alu -8 140 6 2 1379 968 142 0 8 chr5 104086792 104087050 -48450209 + (TG)n Simple_repeat Simple_repeat 1 255 0 2 1379 539 279 45 13 chr5 104087070 104087226 -48450033 - RSINE1 SINE B4 -4 161 1 2 1379 653 199 30 71 chr5 104087256 104087424 -48449835 + U1 snRNA snRNA 2 162 -3 2 1379 331 250 36 0 chr5 104087697 104087781 -48449478 + B3 SINE B2 1 87 -129 2 1379 384 288 41 25 chr5 104087784 104087905 -48449354 - ID_B1 SINE B4 -47 177 55 2 1379 287 250 26 0 chr5 104087949 104088025 -48449234 - MLT1F1 LTR MaLR -82 487 410 2 1379 339 234 0 0 chr5 104088028 104088105 -48449154 - B3 SINE B2 -38 178 102 2 1379 551 217 19 0 chr5 104088114 104088220 -48449039 + B3 SINE B2 103 210 -6 2 1379 908 197 81 25 chr5 104088227 104088425 -48448834 + B3 SINE B2 2 210 -6 2 1379 303 28 0 0 chr5 104088969 104089005 -48448254 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1379 270 0 0 0 chr5 104089009 104089039 -48448220 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1379 919 136 18 12 chr5 104089605 104089776 -48447483 - B2_Mm2 SINE B2 -23 172 1 2 1379 588 306 34 28 chr5 104090503 104090681 -48446578 + B3A SINE B2 4 182 -16 2 1379 686 99 0 38 chr5 104090689 104090794 -48446465 + B1_Mur4 SINE Alu 49 149 -1 2 1379 685 291 109 80 chr5 104090824 104090975 -48446284 + L1M2 LINE L1 4313 4469 -1674 2 1379 1070 109 7 0 chr5 104090975 104091122 -48446137 - B1_Mur4 SINE Alu 0 150 3 2 1379 685 291 109 80 chr5 104091122 104091297 -48445962 + L1M2 LINE L1 4470 4653 -1490 2 1379 1226 34 0 20 chr5 104091297 104091446 -48445813 + B1_Mm SINE Alu 2 147 0 2 1379 685 291 109 80 chr5 104091446 104091853 -48445406 + L1M2 LINE L1 4654 5068 -1075 2 1379 283 318 87 43 chr5 104091997 104092158 -48445101 + ID_B1 SINE B4 29 196 -28 2 1379 468 221 79 9 chr5 104092054 104092168 -48445091 + B1_Mus2 SINE Alu 5 126 -21 2 1379 222 37 0 0 chr5 104092218 104092245 -48445014 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2 1379 717 152 70 31 chr5 104092247 104092376 -48444883 + B1_Mus1 SINE Alu 3 136 -12 2 1379 411 21 0 0 chr5 104092376 104092424 -48444835 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 2 1379 263 167 42 0 chr5 104092501 104092549 -48444710 - L1MC LINE L1 -805 5539 5490 2 1379 521 68 14 0 chr5 104092575 104092649 -48444610 + (TC)n Simple_repeat Simple_repeat 1 75 0 2 1379 539 161 16 74 chr5 104092658 104092779 -48444480 - PB1D9 SINE Alu -5 115 2 2 1379 1266 128 0 5 chr5 104093521 104093717 -48443542 - B2_Mm2 SINE B2 0 195 1 2 1379 227 31 0 30 chr5 104093720 104093753 -48443506 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 2 1379 243 0 0 0 chr5 104093777 104093804 -48443455 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1379 484 273 105 16 chr5 104093812 104094002 -48443257 - B3A SINE B2 0 216 10 2 1379 265 271 0 0 chr5 104094591 104094661 -48442598 - B1F1 SINE Alu -11 138 69 2 1379 363 23 0 0 chr5 104094665 104094709 -48442550 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1379 978 130 56 11 chr5 104094946 104095125 -48442134 - B2_Mm2 SINE B2 -8 187 1 2 1379 566 283 0 0 chr5 104095136 104095274 -48441985 - ID_B1 SINE B4 -2 222 85 2 1379 509 261 14 27 chr5 104095279 104095425 -48441834 - B1F1 SINE Alu -5 144 1 2 1379 691 204 35 0 chr5 104095563 104095705 -48441554 - B1_Mur1 SINE Alu 0 149 3 2 1379 226 308 18 71 chr5 104095606 104095718 -48441541 - MT2B LTR ERVL -344 257 152 2 1379 1252 27 0 0 chr5 104095966 104096113 -48441146 - B1_Mus2 SINE Alu 0 147 1 2 1379 311 296 60 93 chr5 104097072 104097340 -48439919 + MLT1L LTR MaLR 172 430 -180 2 1379 324 277 101 99 chr5 104097400 104097628 -48439631 + B4A SINE B4 81 292 0 2 1379 288 273 68 48 chr5 104097894 104097968 -48439291 + HAL1 LINE L1 1625 1695 -812 2 1379 1365 222 55 17 chr5 104097968 104098312 -48438947 + ORR1E LTR MaLR 3 359 0 2 1379 288 273 68 48 chr5 104098312 104098383 -48438876 + HAL1 LINE L1 1696 1773 -734 2 1379 1401 66 22 6 chr5 104098650 104098832 -48438427 - B2_Mm2 SINE B2 -9 186 2 2 1379 220 320 109 27 chr5 104098984 104099167 -48438092 + B3A SINE B2 1 198 0 2 1379 841 176 0 45 chr5 104099177 104099332 -48437927 - B1_Mur2 SINE Alu 0 149 2 2 1379 216 0 0 0 chr5 104099864 104099888 -48437371 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2 1379 327 294 10 19 chr5 104099967 104100071 -48437188 + ID_B1 SINE B4 122 224 0 2 1379 227 213 197 0 chr5 104100780 104100841 -48436418 + ID_B1 SINE B4 83 155 -69 2 1379 412 265 24 90 chr5 104100846 104100962 -48436297 + B4A SINE B4 36 142 -150 2 1379 4586 108 21 63 chr5 104100962 104101751 -48435508 + RMER6A LTR ERVK 1 756 0 2 1379 412 265 24 90 chr5 104101751 104101800 -48435459 + B4A SINE B4 143 190 -102 2 1379 357 24 0 0 chr5 104101817 104101859 -48435400 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2 1379 835 147 0 0 chr5 104101883 104102012 -48435247 + B1_Mus1 SINE Alu 5 133 -15 2 1379 2262 134 130 43 chr5 104102012 104102412 -48434847 - RMER4A LTR ERVK -3 463 45 2 1379 1496 60 16 0 chr5 104102412 104102596 -48434663 + B2_Mm2 SINE B2 2 188 -7 2 1379 2262 134 130 43 chr5 104102596 104102617 -48434642 - RMER4A LTR ERVK -422 44 6 2 1379 290 186 0 33 chr5 104102766 104102827 -48434432 - ID_B1 SINE B4 -4 220 162 2 1379 392 235 40 87 chr5 104103234 104103383 -48433876 + B1F2 SINE Alu 1 142 -7 2 1379 1110 88 0 13 chr5 104103392 104103528 -48433731 + B1_Mus1 SINE Alu 1 136 -12 2 1379 243 0 0 0 chr5 104103528 104103555 -48433704 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 2 1379 1110 88 0 13 chr5 104103555 104103567 -48433692 + B1_Mus1 SINE Alu 137 147 -1 2 1379 575 287 57 46 chr5 104103682 104103945 -48433314 + MER2 DNA MER2_type 80 345 0 2 1379 222 37 0 0 chr5 104104213 104104240 -48433019 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1379 351 192 123 0 chr5 104104240 104104313 -48432946 - B1_Mur4 SINE Alu -10 140 59 2 1379 832 233 24 24 chr5 104104347 104104554 -48432705 + B3 SINE B2 9 215 -1 2 1379 1660 11 0 21 chr5 104104560 104104750 -48432509 + B2_Mm1a SINE B2 1 186 -7 2 1379 1259 64 64 0 chr5 104104759 104104932 -48432327 + B2_Mm1t SINE B2 2 185 -8 2 1379 365 312 77 46 chr5 104104945 104105204 -48432055 + B4A SINE B4 26 292 0 2 1379 292 207 44 178 chr5 104105218 104105353 -48431906 + B1_Mus1 SINE Alu 32 148 0 2 1379 419 311 89 44 chr5 104105396 104105554 -48431705 + RSINE1 SINE B4 1 165 0 2 1379 786 312 51 68 chr5 104105741 104106124 -48431135 + MLT1C LTR MaLR 46 413 -54 2 1379 456 19 0 0 chr5 104106124 104106177 -48431082 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1379 786 312 51 68 chr5 104106177 104106222 -48431037 + MLT1C LTR MaLR 414 467 0 2 1379 381 300 95 0 chr5 104106453 104106633 -48430626 + MERVL_2A-int LTR ERVL 4206 4342 -1419 2 1379 324 297 37 64 chr5 104106645 104106832 -48430427 - MLT1A0 LTR MaLR -164 201 20 2 1379 283 229 71 20 chr5 104107598 104107696 -48429563 + PB1D10 SINE Alu 1 103 -14 2 1379 340 204 88 231 chr5 104107734 104107776 -48429483 + RSINE1 SINE B4 2 43 -122 2 1379 1109 66 0 0 chr5 104107776 104107912 -48429347 + B1_Mus2 SINE Alu 1 136 -11 2 1379 488 16 0 16 chr5 104107912 104107974 -48429285 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 2 1379 340 204 88 231 chr5 104107974 104108077 -48429182 + RSINE1 SINE B4 44 126 -39 2 1379 1230 217 112 0 chr5 104108079 104108393 -48428866 + ORR1D2 LTR MaLR 1 349 -21 2 1379 335 318 17 60 chr5 104108586 104108820 -48428439 - L1MB3 LINE L1 -79 6104 5881 2 1379 229 333 0 14 chr5 104108832 104108905 -48428354 - ID4_ SINE ID -11 72 1 2 1379 287 127 350 35 chr5 104108926 104109029 -48428230 - B2_Mm2 SINE B2 -14 181 47 2 1379 1003 110 68 0 chr5 104109082 104109245 -48428014 - B2_Mm2 SINE B2 -21 174 1 2 1379 672 223 7 14 chr5 104109281 104109422 -48427837 + B1_Mm SINE Alu 6 145 -2 2 1379 308 263 43 8 chr5 104109522 104109619 -48427640 + LTR41 LTR ERVL 91 182 -576 2 1379 228 250 133 0 chr5 104109711 104109771 -48427488 + ID4 SINE ID 14 81 -2 2 1379 257 174 112 61 chr5 104110268 104110366 -48426893 + PB1D10 SINE Alu 1 103 -14 2 1379 280 197 131 0 chr5 104110406 104110467 -48426792 + RSINE1 SINE B4 2 70 -95 2 1379 486 49 0 0 chr5 104110475 104110536 -48426723 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1379 360 169 70 0 chr5 104110536 104110607 -48426652 - B1_Mur2 SINE Alu -4 145 70 2 1379 650 203 7 53 chr5 104110625 104110776 -48426483 - B1_Mus2 SINE Alu -2 145 2 2 1379 22 0 0 0 chr5 104110776 104110798 -48426461 + AT_rich Low_complexity Low_complexity 1 22 0 2 1379 270 56 0 0 chr5 104110860 104110896 -48426363 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1379 451 237 75 22 chr5 104110901 104111035 -48426224 - ID_B1 SINE B4 -2 222 82 2 1379 222 208 57 0 chr5 104111048 104111101 -48426158 - PB1D7 SINE Alu -9 111 56 2 1379 775 255 57 21 chr5 104111797 104111989 -48425270 + ID_B1 SINE B4 1 199 -25 2 1379 243 0 0 0 chr5 104111990 104112017 -48425242 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 2 1379 540 238 94 16 chr5 104112024 104112152 -48425107 + B1_Mus2 SINE Alu 11 149 -1 2 1379 578 165 198 0 chr5 104112984 104113105 -48424154 + B1_Mur2 SINE Alu 5 149 0 2 1379 593 261 141 16 chr5 104113616 104113807 -48423452 + B3 SINE B2 2 216 0 2 1379 212 0 36 0 chr5 104113912 104113940 -48423319 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1379 1196 48 0 20 chr5 104113940 104114079 -48423180 - B1_Mus2 SINE Alu -8 139 1 2 1379 1337 66 55 11 chr5 104114081 104114264 -48422995 - B2_Mm2 SINE B2 -2 193 3 2 1379 2336 92 3 58 chr5 104114303 104114649 -48422610 - ORR1A2 LTR MaLR 0 327 1 3 1379 265 243 14 54 chr5 104114652 104114726 -48422533 - ID4 SINE ID -12 71 1 3 1379 268 185 37 0 chr5 104114980 104115034 -48422225 - B3A SINE B2 -142 56 1 3 1379 292 0 70 0 chr5 104115039 104115082 -48422177 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 3 1379 327 241 149 18 chr5 104115082 104115196 -48422063 - B1F2 SINE Alu -13 136 8 3 1379 1142 54 7 13 chr5 104115547 104115681 -48421578 + B1_Mus1 SINE Alu 1 135 -13 3 1379 318 26 0 0 chr5 104115681 104115720 -48421539 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 3 1379 1142 54 7 13 chr5 104115720 104115734 -48421525 + B1_Mus1 SINE Alu 136 148 0 3 1379 183 253 50 81 chr5 104115762 104115861 -48421398 + L3 LINE CR1 6 101 -4388 3 1379 418 289 0 32 chr5 104115938 104116063 -48421196 + PB1 SINE Alu 2 122 -5 3 1379 198 0 0 0 chr5 104116063 104116085 -48421174 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1379 714 190 26 60 chr5 104116155 104116306 -48420953 + B1F1 SINE Alu 3 148 -1 3 1379 599 220 30 0 chr5 104116419 104116551 -48420708 - B1_Mus2 SINE Alu -11 136 1 3 1379 195 191 0 0 chr5 104116555 104116618 -48420641 + T-rich Low_complexity Low_complexity 1 63 0 3 1379 289 330 16 87 chr5 104116643 104116769 -48420490 - PB1D7 SINE Alu 0 120 4 3 1379 271 260 154 54 chr5 104116769 104116882 -48420377 - RSINE1 SINE B4 -38 127 2 3 1379 283 262 12 70 chr5 104116882 104116928 -48420331 - PB1 SINE Alu -85 42 2 3 1379 1019 102 0 0 chr5 104116981 104117118 -48420141 + B1_Mm SINE Alu 2 138 -9 3 1379 216 97 0 0 chr5 104117131 104117162 -48420097 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1379 1495 33 66 0 chr5 104117171 104117331 -48419928 + B2_Mm1a SINE B2 1 160 -33 3 1379 378 0 0 0 chr5 104117331 104117373 -48419886 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 3 1379 1495 33 66 0 chr5 104117373 104117393 -48419866 + B2_Mm1a SINE B2 161 191 -2 3 1379 376 241 0 0 chr5 104117405 104117484 -48419775 + ID4 SINE ID 5 83 0 3 1379 414 0 0 0 chr5 104117747 104117793 -48419466 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1379 712 175 203 60 chr5 104117796 104117978 -48419281 - B3 SINE B2 0 216 9 3 1379 217 245 31 165 chr5 104117961 104117998 -48419261 - B4A SINE B4 -169 123 95 3 1379 922 145 21 0 chr5 104117998 104118143 -48419116 - B1_Mur4 SINE Alu -2 148 1 3 1379 217 245 31 165 chr5 104118143 104118227 -48419032 - B4A SINE B4 -198 94 19 3 1379 375 198 9 119 chr5 104118227 104118289 -48418970 + B1_Mus1 SINE Alu 1 97 -51 3 1379 227 200 0 141 chr5 104118289 104118336 -48418923 + RLTR25A LTR ERVK 525 570 -533 3 1379 909 176 0 0 chr5 104118336 104118478 -48418781 - B1_Mur1 SINE Alu -7 142 1 3 1379 227 200 0 141 chr5 104118478 104118494 -48418765 + RLTR25A LTR ERVK 571 579 -524 3 1379 663 166 90 65 chr5 104118630 104118785 -48418474 - B3A SINE B2 -38 160 2 3 1379 588 278 58 51 chr5 104119317 104119534 -48417725 + ID_B1 SINE B4 27 248 -44 3 1379 441 0 0 0 chr5 104119846 104119895 -48417364 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 1379 204 226 0 16 chr5 104119926 104119942 -48417317 + A-rich Low_complexity Low_complexity 3 18 0 3 1379 401 330 111 20 chr5 104119942 104120140 -48417119 + ID_B1 SINE B4 2 217 -7 3 1379 204 226 0 16 chr5 104120140 104120186 -48417073 + A-rich Low_complexity Low_complexity 19 63 0 3 1379 1410 72 6 0 chr5 104120283 104120463 -48416796 - B2_Mm2 SINE B2 -14 181 1 3 1379 207 0 0 0 chr5 104120580 104120603 -48416656 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3 1379 276 324 117 7 chr5 104120845 104120982 -48416277 + MIRb SINE MIR 73 224 -44 3 1379 252 0 0 0 chr5 104121085 104121113 -48416146 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1379 186 43 0 0 chr5 104123561 104123584 -48413675 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 3 1379 287 65 22 0 chr5 104123765 104123811 -48413448 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 1379 917 57 14 8 chr5 104123825 104123969 -48413290 - B1_Mm SINE Alu 0 149 2 3 1379 227 118 0 0 chr5 104123942 104123976 -48413283 + PB1D9 SINE Alu 9 42 -78 3 1379 426 204 136 0 chr5 104123985 104124088 -48413171 - PB1D10 SINE Alu 0 117 1 3 1379 268 154 323 0 chr5 104124160 104124225 -48413034 + B3 SINE B2 36 121 -95 3 1379 261 0 0 0 chr5 104124226 104124255 -48413004 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1379 569 155 10 9 chr5 104124363 104124473 -48412786 - B1_Mur4 SINE Alu 0 150 17 3 1379 851 219 46 59 chr5 104124521 104124740 -48412519 - B3 SINE B2 0 216 1 3 1379 244 279 0 16 chr5 104124746 104124808 -48412451 - PB1D10 SINE Alu -48 69 9 3 1379 843 197 14 19 chr5 104124862 104125057 -48412202 - B3 SINE B2 -1 194 3 3 1379 21 0 0 0 chr5 104125059 104125080 -48412179 + AT_rich Low_complexity Low_complexity 1 21 0 3 1379 230 0 0 32 chr5 104125081 104125112 -48412147 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 3 1379 1144 64 0 0 chr5 104125114 104125255 -48412004 - B1_Mm SINE Alu -6 141 1 3 1379 189 0 0 0 chr5 104125507 104125528 -48411731 + (TTG)n Simple_repeat Simple_repeat 2 22 0 3 1379 584 163 38 28 chr5 104125528 104125650 -48411609 - B1_Mur3 SINE Alu -11 138 1 3 1379 683 209 43 14 chr5 104125697 104125838 -48411421 + B1_Mur4 SINE Alu 6 150 0 3 1379 564 162 0 0 chr5 104125940 104126045 -48411214 + CT-rich Low_complexity Low_complexity 1 105 0 3 1379 529 172 0 11 chr5 104126051 104126139 -48411120 - B2_Mm2 SINE B2 -107 88 2 3 1379 255 150 4 0 chr5 104126144 104126187 -48411072 - B1_Mur1 SINE Alu -15 134 91 3 1379 677 316 73 26 chr5 104126260 104126533 -48410726 - B4A SINE B4 -6 286 1 3 1379 475 261 176 21 chr5 104126546 104126734 -48410525 - ID_B1 SINE B4 -6 218 2 3 1379 246 339 0 16 chr5 104127667 104127730 -48409529 + ID_B1 SINE B4 93 154 -70 3 1379 866 205 82 0 chr5 104127734 104127929 -48409330 + B3 SINE B2 2 212 -4 3 1379 239 0 0 31 chr5 104127996 104128028 -48409231 + (TTA)n Simple_repeat Simple_repeat 3 33 0 3 1379 568 261 0 0 chr5 104128031 104128146 -48409113 + PB1D9 SINE Alu 2 116 -4 3 1379 406 218 13 0 chr5 104128258 104128336 -48408923 + B4 SINE B4 197 275 -17 3 1379 1269 47 0 0 chr5 104128365 104128513 -48408746 - B1_Mus1 SINE Alu 0 148 1 3 1379 201 254 135 63 chr5 104128694 104128820 -48408439 - MER5A DNA MER1_type -54 135 1 3 1379 807 274 189 42 chr5 104128929 104129379 -48407880 - LTR40a LTR ERVL -1 518 3 3 1379 351 274 106 121 chr5 104129558 104129618 -48407641 - RSINE1 SINE B4 0 165 115 3 1379 1929 140 35 32 chr5 104129618 104129843 -48407416 - RMER17C LTR ERVK -3 407 177 3 1379 312 27 0 0 chr5 104129843 104129880 -48407379 + (CAGAC)n Simple_repeat Simple_repeat 2 38 0 3 1379 1929 140 35 32 chr5 104129880 104129971 -48407288 - RMER17C LTR ERVK -234 176 90 3 1379 980 83 0 99 chr5 104129971 104130132 -48407127 + B1_Mus2 SINE Alu 2 146 -1 3 1379 1929 140 35 32 chr5 104130132 104130220 -48407039 - RMER17C LTR ERVK -321 89 2 3 1379 351 274 106 121 chr5 104130220 104130300 -48406959 - RSINE1 SINE B4 -51 114 27 3 1379 1131 36 7 0 chr5 104130279 104130418 -48406841 + B1_Mm SINE Alu 7 146 -1 3 1379 229 64 20 41 chr5 104130418 104130467 -48406792 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 1379 238 283 0 32 chr5 104130468 104130530 -48406729 - RSINE1 SINE B4 -103 62 3 3 1379 649 257 98 0 chr5 104130562 104130745 -48406514 + B3 SINE B2 1 201 -15 3 1379 669 201 342 0 chr5 104130816 104131015 -48406244 + ORR1D2 LTR MaLR 104 370 0 3 1379 247 192 51 64 chr5 104131025 104131058 -48406201 - MT2A LTR ERVL -312 289 215 3 1379 270 93 116 0 chr5 104131058 104131101 -48406158 - PB1D10 SINE Alu -12 105 58 3 1379 527 175 29 10 chr5 104131311 104131415 -48405844 - MT2A LTR ERVL -427 106 1 3 1379 886 109 0 55 chr5 104131487 104131564 -48405695 + B1_Mus2 SINE Alu 10 84 -63 3 1379 1530 146 425 30 chr5 104131564 104131995 -48405264 + MT2B LTR ERVL 1 601 0 3 1379 886 109 0 55 chr5 104131995 104132062 -48405197 + B1_Mus2 SINE Alu 85 146 -1 3 1379 752 154 37 30 chr5 104132130 104132264 -48404995 - B1_Mur2 SINE Alu 0 149 15 3 1379 344 103 0 218 chr5 104132189 104132276 -48404983 - MT2B LTR ERVL -361 240 173 3 1379 360 0 0 0 chr5 104132650 104132690 -48404569 + (TC)n Simple_repeat Simple_repeat 2 41 0 3 1379 293 321 48 36 chr5 104132782 104132954 -48404305 - Lx8 LINE L1 -282 7191 7004 3 1379 1611 123 42 148 chr5 104133083 104133541 -48403718 - RMER17C LTR ERVK 0 410 2 3 1379 192 179 0 0 chr5 104133688 104133727 -48403532 + T-rich Low_complexity Low_complexity 1 39 0 3 1379 1235 111 25 31 chr5 104133727 104133764 -48403495 - B2_Mm2 SINE B2 0 195 158 3 1379 1172 76 0 0 chr5 104133764 104133909 -48403350 - B1_Mus2 SINE Alu -2 145 1 3 1379 252 0 0 0 chr5 104133909 104133937 -48403322 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3 1379 1235 111 25 31 chr5 104133937 104134094 -48403165 - B2_Mm2 SINE B2 -38 157 2 3 1379 239 158 0 0 chr5 104134708 104134746 -48402513 - ORR1A2 LTR MaLR 0 394 357 3 1379 714 133 38 38 chr5 104134736 104134869 -48402390 - B2_Mm1t SINE B2 -60 133 1 3 1379 957 82 108 7 chr5 104134870 104135018 -48402241 - B2_Mm2 SINE B2 -18 177 15 3 1379 700 111 0 9 chr5 104135018 104135127 -48402132 - ORR1A2 LTR MaLR -219 108 1 3 1379 186 133 0 0 chr5 104135476 104135506 -48401753 + (ATG)n Simple_repeat Simple_repeat 1 30 0 3 1379 651 164 60 0 chr5 104135514 104135630 -48401629 + B1_Mus2 SINE Alu 25 147 0 3 1379 225 286 0 0 chr5 104135634 104135697 -48401562 + CT-rich Low_complexity Low_complexity 1 63 0 3 1379 836 266 24 15 chr5 104135716 104135922 -48401337 + B3 SINE B2 4 211 -5 3 1379 1261 27 0 0 chr5 104135938 104136084 -48401175 - B1_Mus2 SINE Alu 0 147 2 3 1379 21 36 0 0 chr5 104136141 104136169 -48401090 + AT_rich Low_complexity Low_complexity 1 28 0 3 1379 2122 192 43 97 chr5 104136169 104136197 -48401062 - RLTR12A LTR ERVK 0 568 541 3 1379 2602 153 56 27 chr5 104136197 104136681 -48400578 - RLTR19 LTR ERVK -1 498 1 4 1379 2122 192 43 97 chr5 104136681 104137252 -48400007 - RLTR12A LTR ERVK -28 540 2 3 1379 336 24 0 0 chr5 104137366 104137407 -48399852 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 4 1379 21 0 0 0 chr5 104137546 104137567 -48399692 + AT_rich Low_complexity Low_complexity 1 21 0 4 1379 1084 91 5 150 chr5 104137568 104137606 -48399653 + B2_Mm2 SINE B2 1 38 -157 4 1379 489 110 0 12 chr5 104137606 104137689 -48399570 + L1_Mus2 LINE L1 6485 6566 0 4 1379 1084 91 5 150 chr5 104137689 104137857 -48399402 + B2_Mm2 SINE B2 39 177 -18 4 1379 237 176 17 50 chr5 104137857 104137917 -48399342 + (CATA)n Simple_repeat Simple_repeat 2 59 0 4 1379 207 0 0 0 chr5 104138020 104138043 -48399216 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1379 215 79 0 26 chr5 104138076 104138115 -48399144 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 4 1379 316 226 67 67 chr5 104138146 104138236 -48399023 - B1F1 SINE Alu -58 91 2 4 1379 283 248 232 27 chr5 104138236 104138255 -48399004 - ID_B1 SINE B4 -23 198 67 4 1379 1234 151 42 28 chr5 104138417 104138629 -48398630 + B3 SINE B2 2 216 0 4 1379 787 175 66 0 chr5 104138642 104138779 -48398480 + B1_Mur2 SINE Alu 3 148 -1 4 1379 1003 261 52 95 chr5 104139409 104139632 -48397627 - MTE2a LTR MaLR -4 375 155 4 1379 1374 77 22 5 chr5 104139632 104139816 -48397443 - B2_Mm2 SINE B2 -7 188 2 4 1379 1003 261 52 95 chr5 104139816 104139907 -48397352 - MTE2a LTR MaLR -225 154 74 4 1379 835 85 8 8 chr5 104139907 104140038 -48397221 + (TTCTC)n Simple_repeat Simple_repeat 1 131 0 4 1379 596 186 31 31 chr5 104140040 104140168 -48397091 + RMER10B LTR ERVL 223 350 -48 4 1379 239 271 34 0 chr5 104141151 104141210 -48396049 + B1F2 SINE Alu 1 61 -88 4 1379 240 274 0 0 chr5 104141161 104141212 -48396047 + ID_B1 SINE B4 94 144 -80 4 1379 284 185 35 16 chr5 104141306 104141391 -48395868 - PB1D10 SINE Alu -1 148 67 4 1379 376 294 91 7 chr5 104141617 104141771 -48395488 + MIRb SINE MIR 91 257 -11 4 1379 231 319 20 50 chr5 104141843 104141942 -48395317 - MamGypLTR2b LTR Gypsy -826 96 1 4 1379 383 214 45 62 chr5 104141942 104142081 -48395178 - RMER17C LTR ERVK -175 235 100 4 1379 1407 242 114 58 chr5 104142183 104142788 -48394471 - Lx8 LINE L1 -45 7428 6790 4 1379 739 226 0 8 chr5 104142871 104143005 -48394254 + B1_Mur1 SINE Alu 14 146 -3 4 1379 1265 256 118 36 chr5 104143006 104143455 -48393804 - Lx8 LINE L1 -720 6753 6268 4 1379 270 0 0 0 chr5 104143514 104143544 -48393715 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1379 1247 41 0 0 chr5 104143544 104143691 -48393568 - B1_Mus2 SINE Alu 0 147 1 4 1379 248 251 20 14 chr5 104143929 104144012 -48393247 - L1MA7 LINE L1 -365 5947 5862 4 1379 766 242 54 32 chr5 104144012 104144275 -48392984 - L1_Mur3 LINE L1 -320 5563 5296 4 1379 345 308 37 18 chr5 104144512 104144621 -48392638 + PB1D9 SINE Alu 8 118 -2 4 1379 316 295 62 21 chr5 104144598 104144628 -48392631 + B4 SINE B4 50 147 -142 4 1379 326 254 0 16 chr5 104144628 104144692 -48392567 + B1_Mur3 SINE Alu 1 63 -86 4 1379 212 206 136 45 chr5 104144704 104144770 -48392489 + ID_B1 SINE B4 86 157 -67 4 1379 207 0 0 0 chr5 104144946 104144969 -48392290 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1379 683 24 0 0 chr5 104145012 104145097 -48392162 - L1Md_A LINE L1 0 6582 6498 4 1379 201 114 0 0 chr5 104145295 104145311 -48391948 + (A)n Simple_repeat Simple_repeat 1 16 0 4 1379 1231 48 0 0 chr5 104145311 104145456 -48391803 + B1_Mus2 SINE Alu 3 147 0 4 1379 201 114 0 0 chr5 104145456 104145474 -48391785 + (A)n Simple_repeat Simple_repeat 1 18 0 4 1379 413 269 25 112 chr5 104146079 104146276 -48390983 - B3A SINE B2 -16 182 3 4 1379 1030 104 14 20 chr5 104146303 104146450 -48390809 + B1_Mus1 SINE Alu 3 148 0 4 1379 404 277 29 38 chr5 104146493 104146598 -48390661 + PB1D10 SINE Alu 14 117 0 4 1379 372 284 45 141 chr5 104146620 104146776 -48390483 + B3A SINE B2 41 181 -14 4 1379 478 252 29 59 chr5 104146802 104146946 -48390313 + B1_Mur1 SINE Alu 1 148 -1 4 1379 933 92 42 14 chr5 104146973 104147105 -48390154 + B1_Mus1 SINE Alu 1 137 -11 4 1379 219 36 0 0 chr5 104147105 104147133 -48390126 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1379 556 257 0 0 chr5 104147240 104147353 -48389906 + B1_Mur3 SINE Alu 5 117 -32 4 1379 235 374 23 39 chr5 104147353 104147368 -48389891 + ID_B1 SINE B4 86 211 -13 4 1379 24 0 0 0 chr5 104147430 104147454 -48389805 + AT_rich Low_complexity Low_complexity 1 24 0 4 1379 360 0 0 0 chr5 104147481 104147521 -48389738 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1379 421 309 23 75 chr5 104147534 104147667 -48389592 - RSINE1 SINE B4 -20 145 20 4 1379 839 174 6 25 chr5 104147711 104147870 -48389389 - URR1B DNA MER1_type -15 210 55 4 1379 187 318 68 34 chr5 104148604 104148692 -48388567 - L4 LINE RTE -854 1175 1085 4 1379 22 0 0 0 chr5 104148847 104148869 -48388390 + AT_rich Low_complexity Low_complexity 1 22 0 4 1379 620 139 191 0 chr5 104149302 104149417 -48387842 + B1_Mus1 SINE Alu 6 142 -6 4 1379 432 37 0 0 chr5 104149419 104149473 -48387786 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 4 1379 312 252 250 28 chr5 104149561 104149738 -48387521 - B3 SINE B2 0 216 1 4 1379 302 51 0 0 chr5 104150431 104150470 -48386789 + U2 snRNA snRNA 1 39 -149 4 1379 231 304 42 32 chr5 104150531 104150626 -48386633 - RLTR13C1 LTR ERVK -491 492 397 4 1379 1135 141 16 26 chr5 104150823 104151012 -48386247 + B2_Mm2 SINE B2 3 189 -6 4 1379 221 270 188 51 chr5 104151030 104151147 -48386112 + RSINE1 SINE B4 2 134 -31 4 1379 180 0 0 0 chr5 104151161 104151181 -48386078 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 4 1379 253 0 54 0 chr5 104151205 104151242 -48386017 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1379 1037 68 30 0 chr5 104151242 104151374 -48385885 - B1_Mus2 SINE Alu -10 137 2 4 1379 261 0 0 0 chr5 104151420 104151449 -48385810 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1379 699 173 14 48 chr5 104151489 104151635 -48385624 + B1_Mur1 SINE Alu 9 149 0 4 1379 654 207 57 7 chr5 104151764 104151905 -48385354 - B1_Mur1 SINE Alu 0 149 2 4 1379 426 333 80 26 chr5 104152532 104152683 -48384576 + RSINE1 SINE B4 5 163 -2 4 1379 403 252 40 20 chr5 104152718 104152819 -48384440 - PB1D10 SINE Alu -2 115 13 4 1379 412 266 48 0 chr5 104152863 104152991 -48384268 - B1_Mur1 SINE Alu 0 149 5 4 1379 441 252 52 0 chr5 104153051 104153186 -48384073 + B1_Mm SINE Alu 5 146 -1 4 1379 505 158 104 47 chr5 104155161 104155267 -48381992 - PB1D7 SINE Alu -8 112 1 4 1379 279 0 0 0 chr5 104155633 104155664 -48381595 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1379 306 0 0 0 chr5 104155664 104155697 -48381562 + (GA)n Simple_repeat Simple_repeat 2 35 0 4 1379 1643 31 0 35 chr5 104155909 104156109 -48381150 + B2_Mm1t SINE B2 1 193 0 4 1379 523 76 0 0 chr5 104156225 104156291 -48380968 + B1_Mus2 SINE Alu 74 139 -8 4 1379 304 180 0 0 chr5 104156416 104156466 -48380793 + B1_Mur2 SINE Alu 68 117 -32 4 1379 1339 106 5 0 chr5 104156565 104156754 -48380505 + B2_Mm2 SINE B2 3 192 -3 4 1379 438 260 188 22 chr5 104156810 104156991 -48380268 - ID_B1 SINE B4 0 224 14 4 1379 247 311 0 0 chr5 104157444 104157518 -48379741 + B3A SINE B2 1 74 -124 4 1379 429 240 0 0 chr5 104157640 104157715 -48379544 - B1_Mur3 SINE Alu -54 95 21 4 1379 225 0 0 0 chr5 104157740 104157765 -48379494 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1379 324 0 0 0 chr5 104157794 104157830 -48379429 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1379 744 94 47 0 chr5 104158184 104158290 -48378969 - B1_Mm SINE Alu 0 147 37 4 1379 1162 122 138 0 chr5 104158952 104159148 -48378111 + URR1A DNA MER1_type 2 224 -2 4 1379 1301 91 0 6 chr5 104159270 104159446 -48377813 - B2_Mm2 SINE B2 -19 176 2 4 1379 482 221 71 99 chr5 104159467 104159608 -48377651 - ID_B1 SINE B4 0 224 88 4 1379 548 230 77 24 chr5 104160427 104160596 -48376663 + B3A SINE B2 5 182 -16 4 1379 402 274 10 50 chr5 104160616 104160716 -48376543 + ID_B1 SINE B4 1 96 -128 4 1379 437 241 197 8 chr5 104160890 104161007 -48376252 + B1_Mus2 SINE Alu 3 141 -6 4 1379 408 20 0 0 chr5 104162146 104162195 -48375064 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1379 838 132 10 144 chr5 104162344 104162389 -48374870 + B2_Mm2 SINE B2 1 37 -158 4 1379 1451 68 11 0 chr5 104162389 104162579 -48374680 + B2_Mm1t SINE B2 1 192 -1 4 1379 838 132 10 144 chr5 104162579 104162727 -48374532 + B2_Mm2 SINE B2 38 168 -27 4 1379 2159 189 138 38 chr5 104162727 104163287 -48373972 - RMER17C-int LTR ERVK -34 3204 2589 4 1379 304 200 0 18 chr5 104163287 104163343 -48373916 + LSU-rRNA_Hsa rRNA rRNA 4199 4253 -782 4 1379 524 195 15 96 chr5 104163343 104163479 -48373780 - RMER17C-int LTR ERVK -707 2531 2407 4 1379 203 0 37 0 chr5 104163759 104163786 -48373473 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1379 589 299 14 7 chr5 104163953 104164098 -48373161 + ID_B1 SINE B4 49 194 -30 4 1379 411 236 58 62 chr5 104164107 104164234 -48373025 - PB1D9 SINE Alu -11 139 9 4 1379 228 310 101 25 chr5 104165175 104165294 -48371965 - LTR84b LTR ERVL -76 685 558 4 1379 258 116 0 0 chr5 104165294 104165337 -48371922 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1379 258 227 0 85 chr5 104165810 104165892 -48371367 + PB1D9 SINE Alu 1 75 -45 4 1379 365 186 5 0 chr5 104165908 104165987 -48371272 - PB1D10 SINE Alu 0 117 48 4 1379 198 0 0 0 chr5 104166056 104166078 -48371181 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1379 235 158 0 0 chr5 104166770 104166808 -48370451 + L2c LINE L2 3342 3379 -8 5 1379 252 318 8 93 chr5 104166913 104167031 -48370228 - L2c LINE L2 -5 3382 3275 5 1379 198 0 0 0 chr5 104167138 104167160 -48370099 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1379 483 186 41 186 chr5 104167944 104167971 -48369288 - B1_Mm SINE Alu 0 147 126 5 1379 279 0 0 0 chr5 104167971 104168002 -48369257 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1379 483 186 41 186 chr5 104168002 104168146 -48369113 - B1_Mm SINE Alu -22 125 1 5 1379 520 200 36 51 chr5 104168466 104168485 -48368774 + ID SINE ID 64 80 -144 5 1379 947 63 0 0 chr5 104168485 104168611 -48368648 + B1_Mus1 SINE Alu 2 127 -21 5 1379 1278 98 11 21 chr5 104168741 104168929 -48368330 - B2_Mm2 SINE B2 -9 186 1 5 1379 21 57 0 0 chr5 104168940 104168975 -48368284 + AT_rich Low_complexity Low_complexity 1 35 0 5 1379 1149 75 0 13 chr5 104169514 104169663 -48367596 - B1_Mus1 SINE Alu 0 148 2 5 1379 254 200 134 94 chr5 104169921 104170048 -48367211 + YREP_Mm Unknown Unknown 175 306 -1506 5 1379 404 241 136 17 chr5 104169936 104170066 -48367193 - ID_B1 SINE B4 -9 215 75 5 1379 998 228 66 0 chr5 104170170 104170381 -48366878 - URR1B DNA MER1_type 0 225 1 5 1379 330 26 0 0 chr5 104170688 104170727 -48366532 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1379 274 321 12 12 chr5 104170810 104170895 -48366364 - ID_B1 SINE B4 -54 170 86 5 1379 306 129 0 0 chr5 104170953 104171015 -48366244 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1379 234 339 80 37 chr5 104171162 104171349 -48365910 + MIR SINE MIR 25 219 -43 5 1379 214 188 19 111 chr5 104171866 104171886 -48365373 - B3A SINE B2 -128 70 51 5 1379 3334 113 136 0 chr5 104171886 104172415 -48364844 - MT2B LTR ERVL 0 601 1 5 1379 214 188 19 111 chr5 104172415 104172448 -48364811 - B3A SINE B2 -148 50 22 5 1379 24 32 0 0 chr5 104172469 104172500 -48364759 + AT_rich Low_complexity Low_complexity 1 31 0 5 1379 1183 70 128 6 chr5 104172500 104172514 -48364745 - B2_Mm2 SINE B2 0 195 182 5 1379 1279 34 0 0 chr5 104172514 104172661 -48364598 - B1_Mus2 SINE Alu 0 147 1 5 1379 1183 70 128 6 chr5 104172661 104172818 -48364441 - B2_Mm2 SINE B2 -14 181 3 5 1379 516 101 0 0 chr5 104173260 104173349 -48363910 + (TC)n Simple_repeat Simple_repeat 1 89 0 5 1379 305 227 26 26 chr5 104173349 104173426 -48363833 - PB1D10 SINE Alu -5 112 36 5 1379 519 273 17 106 chr5 104173810 104174028 -48363231 + B3A SINE B2 7 212 -4 5 1379 1105 120 38 11 chr5 104174112 104174297 -48362962 - B2_Mm2 SINE B2 -3 192 3 5 1379 556 48 0 35 chr5 104174325 104174412 -48362847 - L1Md_F2 LINE L1 0 6582 6499 5 1379 1147 241 144 32 chr5 104175159 104175498 -48361761 - MTE2b LTR MaLR 0 379 3 5 1379 404 245 0 60 chr5 104176402 104176502 -48360757 - B1_Mus1 SINE Alu -41 107 14 5 1379 316 294 126 0 chr5 104176662 104176781 -48360478 - L1MD3 LINE L1 -1002 6993 6860 5 1379 23 0 0 0 chr5 104176806 104176829 -48360430 + AT_rich Low_complexity Low_complexity 1 23 0 5 1379 1662 164 44 44 chr5 104177123 104177442 -48359817 - RLTR14 LTR ERV1 -45 337 19 5 1379 345 297 62 67 chr5 104177662 104177787 -48359472 - L1MCa LINE L1 -4230 2278 2158 5 1379 1176 54 0 13 chr5 104177787 104177936 -48359323 - B1_Mus2 SINE Alu 0 147 1 5 1379 345 297 62 67 chr5 104177936 104177963 -48359296 - L1MCa LINE L1 -4351 2157 2131 5 1379 1178 74 0 0 chr5 104177963 104178111 -48359148 - B1_Mus1 SINE Alu 0 148 1 5 1379 345 297 62 67 chr5 104178111 104178152 -48359107 - L1MCa LINE L1 -4378 2130 2085 5 1379 542 182 3 10 chr5 104178231 104178327 -48358932 - PB1D9 SINE Alu -11 109 13 5 1379 251 292 109 50 chr5 104178327 104178428 -48358831 + PB1D10 SINE Alu 3 109 -8 5 1379 461 193 77 68 chr5 104178438 104178555 -48358704 + PB1D9 SINE Alu 2 119 -1 5 1379 363 284 80 45 chr5 104179052 104179251 -48358008 - Charlie2a DNA MER1_type -2596 265 60 5 1379 645 49 0 0 chr5 104179336 104179417 -48357842 + (TA)n Simple_repeat Simple_repeat 2 82 0 5 1379 296 247 111 0 chr5 104179480 104179561 -48357698 + B1F1 SINE Alu 5 94 -55 5 1379 233 197 15 0 chr5 104179645 104179711 -48357548 + CT-rich Low_complexity Low_complexity 4 70 0 5 1379 346 261 43 0 chr5 104179722 104179814 -48357445 - ID_B1 SINE B4 0 224 129 5 1379 493 265 85 8 chr5 104180266 104180384 -48356875 - B1_Mur1 SINE Alu -10 139 13 5 1379 262 270 46 83 chr5 104180296 104180405 -48356854 - MT2B LTR ERVL -338 263 159 5 1379 764 38 75 0 chr5 104180667 104180773 -48356486 - B1_Mus2 SINE Alu -32 115 2 5 1379 1621 41 0 20 chr5 104180932 104181129 -48356130 - B2_Mm1t SINE B2 0 193 1 5 1379 1431 70 38 0 chr5 104181134 104181319 -48355940 - B2_Mm2 SINE B2 -3 192 1 5 1379 645 235 90 71 chr5 104181326 104181537 -48355722 - B3 SINE B2 0 216 2 5 1379 258 238 32 0 chr5 104181538 104181601 -48355658 - Charlie1a DNA MER1_type -604 851 787 5 1379 640 296 180 101 chr5 104181634 104182216 -48355043 - Charlie1a DNA MER1_type -762 693 66 5 1379 198 0 0 0 chr5 104182517 104182539 -48354720 + (GGGTG)n Simple_repeat Simple_repeat 5 26 0 5 1379 324 0 0 0 chr5 104183777 104183813 -48353446 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1379 397 149 0 15 chr5 104184698 104184766 -48352493 + B1_Mus2 SINE Alu 15 81 -66 5 1379 660 144 21 77 chr5 104184767 104184910 -48352349 + B1_Mur3 SINE Alu 15 149 0 5 1379 233 303 0 13 chr5 104185160 104185237 -48352022 + LTR84a LTR ERVL 274 349 -408 5 1379 250 318 45 37 chr5 104185251 104185385 -48351874 - MIR SINE MIR -98 164 30 5 1379 759 231 28 17 chr5 104185831 104185959 -48351300 + B3A SINE B2 20 151 -47 5 1379 180 0 0 0 chr5 104185959 104185979 -48351280 + (CAGG)n Simple_repeat Simple_repeat 1 20 0 5 1379 759 231 28 17 chr5 104185979 104186026 -48351233 + B3A SINE B2 152 197 -1 5 1379 207 0 0 0 chr5 104186035 104186058 -48351201 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 5 1379 180 0 0 0 chr5 104186350 104186370 -48350889 + (TGG)n Simple_repeat Simple_repeat 1 20 0 5 1379 249 108 0 0 chr5 104186382 104186419 -48350840 + (TCC)n Simple_repeat Simple_repeat 1 37 0 5 1379 317 245 150 11 chr5 104186419 104186523 -48350736 - B1_Mur2 SINE Alu -2 118 2 5 1379 189 0 0 0 chr5 104186571 104186592 -48350667 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1379 24 0 0 0 chr5 104187718 104187742 -48349517 + AT_rich Low_complexity Low_complexity 1 24 0 5 1379 29 0 0 0 chr5 104188091 104188120 -48349139 + AT_rich Low_complexity Low_complexity 1 29 0 5 1379 472 177 10 0 chr5 104188412 104188508 -48348751 + PB1D9 SINE Alu 2 98 -22 5 1379 597 142 131 9 chr5 104190597 104190704 -48346555 + B1_Mur3 SINE Alu 30 149 0 5 1379 996 108 99 28 chr5 104191242 104191423 -48345836 - B2_Mm2 SINE B2 0 195 2 5 1379 366 252 38 38 chr5 104192359 104192491 -48344768 - L1MB7 LINE L1 -200 5984 5853 5 1379 302 286 118 15 chr5 104192554 104192689 -48344570 - L1MB7 LINE L1 -443 5741 5593 5 1379 324 392 26 20 chr5 104192695 104192846 -48344413 - RSINE1 SINE B4 0 165 14 5 1379 231 36 0 0 chr5 104193228 104193256 -48344003 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 5 1379 1168 55 7 0 chr5 104193257 104193402 -48343857 - B1_Mm SINE Alu 0 147 2 5 1379 180 0 0 0 chr5 104193417 104193437 -48343822 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5 1379 305 227 25 74 chr5 104193437 104193518 -48343741 - B1_Mur3 SINE Alu -9 140 64 5 1379 506 180 311 0 chr5 104193570 104193731 -48343528 - B3 SINE B2 -5 211 1 5 1379 1199 55 7 0 chr5 104193995 104194141 -48343118 - B1_Mus1 SINE Alu 0 148 2 5 1379 787 261 28 0 chr5 104194930 104195106 -48342153 - B3 SINE B2 -34 182 2 5 1379 595 304 82 6 chr5 104195493 104195675 -48341584 - B3 SINE B2 -6 210 15 5 1379 483 258 155 43 chr5 104196105 104196312 -48340947 - B4A SINE B4 -60 232 3 5 1379 222 191 0 0 chr5 104196481 104196523 -48340736 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1379 383 38 0 19 chr5 104196682 104196736 -48340523 - B1_Mus1 SINE Alu -63 85 33 5 1379 286 188 100 14 chr5 104197695 104197765 -48339494 + PB1D9 SINE Alu 36 111 -9 5 1379 282 204 32 0 chr5 104197830 104197923 -48339336 + (TCCA)n Simple_repeat Simple_repeat 4 99 0 5 1379 555 200 247 23 chr5 104198079 104198253 -48339006 - B3 SINE B2 -2 214 2 5 1379 249 247 82 0 chr5 104198594 104198667 -48338592 + BC1_Mm scRNA scRNA 14 92 -60 5 1379 470 226 134 70 chr5 104199921 104200070 -48337189 + B3 SINE B2 2 167 -49 5 1379 198 0 0 0 chr5 104200070 104200092 -48337167 + (CATA)n Simple_repeat Simple_repeat 4 25 0 5 1379 470 226 134 70 chr5 104200092 104200128 -48337131 + B3 SINE B2 168 199 -17 5 1379 200 180 113 57 chr5 104200623 104200676 -48336583 + L2c LINE L2 3079 3134 -253 5 1379 255 61 0 0 chr5 104201925 104201958 -48335301 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 5 1379 210 71 0 0 chr5 104202157 104202185 -48335074 + (CTG)n Simple_repeat Simple_repeat 2 29 0 5 1380 458 232 4 0 chr5 104202672 104202773 -48334486 + B1_Mur1 SINE Alu 32 138 -11 5 1380 183 42 0 0 chr5 104202773 104202797 -48334462 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1380 243 0 0 0 chr5 104202986 104203013 -48334246 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1380 207 100 0 0 chr5 104203474 104203504 -48333755 + (TCCA)n Simple_repeat Simple_repeat 3 32 0 5 1380 238 301 83 55 chr5 104203511 104203620 -48333639 - RSINE1 SINE B4 -1 164 53 5 1380 480 35 0 0 chr5 104204912 104204970 -48332289 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 5 1380 628 145 127 22 chr5 104204970 104205104 -48332155 - B1_Mur4 SINE Alu -2 148 1 5 1380 261 0 0 0 chr5 104205377 104205406 -48331853 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1380 653 262 68 21 chr5 104205417 104205608 -48331651 - B3 SINE B2 -15 201 2 5 1380 480 194 90 27 chr5 104205650 104205761 -48331498 - B3 SINE B2 -2 214 97 6 1380 270 0 0 0 chr5 104206214 104206244 -48331015 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1380 342 0 0 0 chr5 104206244 104206281 -48330978 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1380 617 232 22 0 chr5 104206339 104206477 -48330782 - B1_Mur3 SINE Alu -7 142 2 6 1380 180 0 0 0 chr5 104206954 104206974 -48330285 + (C)n Simple_repeat Simple_repeat 1 20 0 6 1380 252 143 0 0 chr5 104207253 104207295 -48329964 + (A)n Simple_repeat Simple_repeat 1 42 0 6 1380 25 0 0 0 chr5 104208234 104208259 -48329000 + AT_rich Low_complexity Low_complexity 1 25 0 6 1380 730 207 7 0 chr5 104208580 104208715 -48328544 - RMER1C Other Other -378 964 829 6 1380 216 0 0 0 chr5 104209238 104209262 -48327997 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1380 465 19 0 0 chr5 104209320 104209374 -48327885 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1380 473 235 78 0 chr5 104210457 104210559 -48326700 - PB1D9 SINE Alu -8 112 3 6 1380 224 171 0 0 chr5 104210944 104210979 -48326280 - PB1D9 SINE Alu -12 108 74 6 1380 330 67 0 0 chr5 104211042 104211087 -48326172 + (T)n Simple_repeat Simple_repeat 1 45 0 6 1380 434 211 18 15 chr5 104211090 104211199 -48326060 - B1_Mur4 SINE Alu 0 150 16 6 1380 255 255 63 11 chr5 104211636 104211731 -48325528 - PB1D7 SINE Alu -18 102 3 6 1380 412 223 47 210 chr5 104211767 104212000 -48325259 - B3A SINE B2 -4 212 18 6 1380 549 265 127 16 chr5 104213553 104213722 -48323537 - B3 SINE B2 -3 192 25 6 1380 899 122 57 14 chr5 104213727 104213868 -48323391 - B1_Mus1 SINE Alu -1 147 1 6 1380 470 214 137 0 chr5 104214781 104214898 -48322361 + B1_Mus1 SINE Alu 1 133 -15 6 1380 226 222 0 0 chr5 104215008 104215071 -48322188 + T-rich Low_complexity Low_complexity 1 63 0 6 1380 1168 62 7 0 chr5 104215074 104215220 -48322039 - B1_Mus1 SINE Alu 0 148 2 6 1380 378 286 26 26 chr5 104215497 104215612 -48321647 - RSINE1 SINE B4 -48 117 3 6 1380 226 244 43 75 chr5 104215755 104215848 -48321411 - MER87 LTR ERV1 -275 266 177 6 1380 228 250 0 59 chr5 104217028 104217130 -48320129 + (CAATA)n Simple_repeat Simple_repeat 2 97 0 6 1380 248 270 27 0 chr5 104217145 104217219 -48320040 + L1MA5 LINE L1 6221 6296 -4 6 1380 369 0 0 0 chr5 104218154 104218195 -48319064 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1380 22 0 0 0 chr5 104218406 104218428 -48318831 + AT_rich Low_complexity Low_complexity 1 22 0 6 1380 22 35 0 0 chr5 104219472 104219501 -48317758 + AT_rich Low_complexity Low_complexity 1 29 0 6 1380 579 174 33 42 chr5 104219593 104219713 -48317546 - B1_Mur4 SINE Alu 0 150 32 6 1380 239 263 125 48 chr5 104219688 104219719 -48317540 + LTR84a LTR ERVL 644 673 -84 6 1380 622 239 215 0 chr5 104219719 104219882 -48317377 - B3 SINE B2 -18 198 1 6 1380 239 263 125 48 chr5 104219882 104219954 -48317305 + LTR84a LTR ERVL 674 755 -2 6 1380 254 50 25 0 chr5 104220666 104220706 -48316553 + (CCCCCA)n Simple_repeat Simple_repeat 4 44 0 6 1380 1158 75 7 0 chr5 104221467 104221614 -48315645 - B1_Mus1 SINE Alu 0 148 1 6 1380 652 260 66 33 chr5 104222361 104222544 -48314715 - B3 SINE B2 -27 189 1 6 1380 695 222 15 0 chr5 104222654 104222789 -48314470 - B1_Mur3 SINE Alu -12 137 1 6 1380 1367 87 16 5 chr5 104223596 104223781 -48313478 - B2_Mm2 SINE B2 -7 188 2 6 1380 374 200 25 0 chr5 104223861 104223941 -48313318 + (CTGGGG)n Simple_repeat Simple_repeat 1 82 0 6 1380 394 169 13 0 chr5 104224686 104224763 -48312496 + URR1A DNA MER1_type 79 156 -70 6 1380 562 133 11 0 chr5 104224796 104224886 -48312373 - URR1B DNA MER1_type 0 225 135 6 1380 239 316 93 21 chr5 104224979 104225076 -48312183 + PB1D7 SINE Alu 10 113 -7 6 1380 400 254 35 35 chr5 104225459 104225573 -48311686 + B1_Mur1 SINE Alu 16 129 -20 6 1380 481 211 55 9 chr5 104227642 104227752 -48309507 - PB1D10 SINE Alu -2 115 1 6 1380 499 219 39 122 chr5 104227967 104228123 -48309136 - B3A SINE B2 -17 181 39 6 1380 756 168 7 81 chr5 104228160 104228309 -48308950 - B1_Mus1 SINE Alu -1 147 10 6 1380 271 312 0 49 chr5 104228934 104229015 -48308244 - ID SINE ID -142 82 6 6 1380 249 33 0 0 chr5 104229919 104229949 -48307310 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1380 1450 66 16 5 chr5 104230266 104230450 -48306809 - B2_Mm2 SINE B2 -8 187 2 6 1380 22 0 0 0 chr5 104230831 104230853 -48306406 + AT_rich Low_complexity Low_complexity 1 22 0 6 1380 213 290 0 31 chr5 104231642 104231706 -48305553 + ID4_ SINE ID 2 63 -20 6 1380 289 303 147 7 chr5 104231758 104231901 -48305358 + RSINE1 SINE B4 3 165 0 6 1380 382 194 172 0 chr5 104232063 104232156 -48305103 - PB1D9 SINE Alu 0 120 12 6 1380 393 22 0 0 chr5 104232929 104232975 -48304284 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1380 263 312 44 108 chr5 104233072 104233230 -48304029 - B4 SINE B4 -113 179 32 6 1380 249 217 14 0 chr5 104233567 104233636 -48303623 + T-rich Low_complexity Low_complexity 2 71 0 6 1380 318 0 0 0 chr5 104233661 104233699 -48303560 - B2_Mm2 SINE B2 -156 39 2 6 1380 1108 60 0 97 chr5 104233902 104234088 -48303171 - L1Md_F2 LINE L1 0 6582 6415 6 1380 1492 92 9 13 chr5 104234088 104234353 -48302906 - L1Md_F2 LINE L1 -381 6201 5939 6 1380 585 255 152 19 chr5 104234590 104234846 -48302413 + B4A SINE B4 3 292 0 6 1380 646 241 78 47 chr5 104235137 104235329 -48301930 - B3A SINE B2 0 198 1 6 1380 188 308 104 19 chr5 104235859 104235965 -48301294 - MIRc SINE MIR -88 180 66 6 1380 239 289 160 45 chr5 104236365 104236521 -48300738 + MIRb SINE MIR 32 205 -63 6 1380 192 291 21 0 chr5 104237392 104237533 -48299726 + (TG)n Simple_repeat Simple_repeat 1 144 0 6 1380 597 209 97 39 chr5 104237533 104237687 -48299572 - RSINE1 SINE B4 0 165 3 6 1380 1351 78 10 30 chr5 104238632 104238830 -48298429 - B2_Mm2 SINE B2 0 195 2 6 1380 558 301 21 64 chr5 104239199 104239387 -48297872 + B3A SINE B2 3 182 -16 6 1380 597 118 0 0 chr5 104239387 104239497 -48297762 + (GA)n Simple_repeat Simple_repeat 1 110 0 6 1380 348 24 0 0 chr5 104240464 104240505 -48296754 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1380 203 55 0 53 chr5 104240732 104240770 -48296489 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 6 1380 1230 55 0 0 chr5 104241198 104241344 -48295915 + B1_Mus2 SINE Alu 1 146 -1 6 1380 1558 113 55 4 chr5 104242305 104242562 -48294697 - RLTR9D LTR ERVK -133 270 1 6 1380 321 26 0 0 chr5 104242815 104242853 -48294406 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1380 781 227 19 33 chr5 104244548 104244762 -48292497 - B3 SINE B2 -5 211 1 6 1380 1164 124 16 11 chr5 104245502 104245690 -48291569 - B2_Mm2 SINE B2 -5 190 2 6 1380 603 112 216 0 chr5 104245700 104245816 -48291443 - B1_Mm SINE Alu -6 141 1 6 1380 1371 215 99 62 chr5 104246033 104246435 -48290824 + MTD LTR MaLR 3 419 0 6 1380 207 173 0 37 chr5 104246473 104246527 -48290732 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 6 1380 785 178 13 20 chr5 104246527 104246676 -48290583 - B1_Mur4 SINE Alu 0 150 3 6 1380 181 91 68 0 chr5 104246689 104246733 -48290526 + A-rich Low_complexity Low_complexity 2 48 0 6 1380 762 178 0 136 chr5 104248664 104248833 -48288426 - B3 SINE B2 -68 148 3 6 1380 22 0 0 0 chr5 104248842 104248864 -48288395 + AT_rich Low_complexity Low_complexity 1 22 0 6 1380 232 237 0 31 chr5 104251290 104251386 -48285873 + C-rich Low_complexity Low_complexity 2 94 0 6 1380 403 198 20 77 chr5 104251631 104251743 -48285516 + PB1D9 SINE Alu 28 130 -20 6 1380 338 205 77 148 chr5 104252315 104252470 -48284789 - B1F1 SINE Alu -2 147 4 6 1380 240 35 0 0 chr5 104252489 104252518 -48284741 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 6 1380 484 250 28 0 chr5 104252626 104252734 -48284525 - PB1D10 SINE Alu -5 112 2 6 1380 189 0 0 0 chr5 104253450 104253471 -48283788 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1380 306 194 0 0 chr5 104253608 104253670 -48283589 + CT-rich Low_complexity Low_complexity 1 62 0 6 1380 478 193 101 0 chr5 104253690 104253799 -48283460 - PB1D7 SINE Alu 0 120 1 6 1380 468 0 0 0 chr5 104254083 104254135 -48283124 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1380 342 45 0 0 chr5 104254678 104254722 -48282537 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1380 215 308 165 0 chr5 104255415 104255506 -48281753 + ID_B1 SINE B4 1 106 -118 6 1380 266 274 77 87 chr5 104255538 104255642 -48281617 + B4A SINE B4 190 292 0 6 1380 441 0 0 0 chr5 104255664 104255713 -48281546 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1380 308 298 11 11 chr5 104255715 104255810 -48281449 + PB1D7 SINE Alu 1 95 -25 6 1380 471 279 53 26 chr5 104256948 104257099 -48280160 - MER58A DNA MER1_type -27 197 43 6 1380 263 254 127 0 chr5 104258580 104258651 -48278608 - ID4_ SINE ID -2 81 2 6 1380 1148 88 0 7 chr5 104258729 104258878 -48278381 + B1_Mus1 SINE Alu 1 148 0 6 1380 494 250 152 8 chr5 104259519 104259644 -48277615 - B1_Mur1 SINE Alu -1 148 6 6 1380 301 290 113 28 chr5 104259644 104259661 -48277598 - ID_B1 SINE B4 0 224 71 6 1380 227 235 190 20 chr5 104259652 104259752 -48277507 - RSINE1 SINE B4 -6 159 43 6 1380 1125 112 58 6 chr5 104260068 104260239 -48277020 - B2_Mm2 SINE B2 -14 181 2 6 1380 288 278 0 0 chr5 104261162 104261234 -48276025 + ID4 SINE ID 1 72 -11 7 1380 415 278 61 32 chr5 104261519 104261686 -48275573 + B3A SINE B2 13 176 -19 7 1380 542 186 119 0 chr5 104264348 104264466 -48272793 - B1_Mur2 SINE Alu -11 138 7 7 1380 200 219 0 0 chr5 104264508 104264549 -48272710 + (TCTG)n Simple_repeat Simple_repeat 1 41 0 7 1380 453 269 89 140 chr5 104264973 104265401 -48271858 + RMER10A LTR ERVL 12 417 -25 7 1380 206 32 0 31 chr5 104265964 104265996 -48271263 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1380 1055 127 51 0 chr5 104266001 104266158 -48271101 - B2_Mm2 SINE B2 -30 165 1 7 1380 284 295 0 0 chr5 104266425 104266503 -48270756 + ID4_ SINE ID 3 80 -3 7 1380 440 204 5 1 chr5 104266810 104266895 -48270364 - PB1D10 SINE Alu -19 101 15 7 1380 251 137 0 19 chr5 104267101 104267153 -48270106 - Lx2 LINE L1 -1 6996 6946 7 1380 402 280 53 46 chr5 104269468 104269491 -48267768 + B4 SINE B4 67 90 -202 7 1380 715 146 9 0 chr5 104269491 104269601 -48267658 + B1_Mur2 SINE Alu 1 111 -38 7 1380 423 0 0 0 chr5 104269603 104269650 -48267609 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1380 217 239 47 5 chr5 104270355 104270419 -48266840 - ID4 SINE ID -8 75 10 7 1380 336 189 0 0 chr5 104270580 104270654 -48266605 + CT-rich Low_complexity Low_complexity 3 76 0 7 1380 25 0 0 0 chr5 104270656 104270681 -48266578 + AT_rich Low_complexity Low_complexity 1 25 0 7 1380 210 71 0 0 chr5 104272886 104272914 -48264345 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 7 1380 443 257 18 35 chr5 104272960 104273073 -48264186 - RSINE1 SINE B4 -44 121 11 7 1380 271 262 59 12 chr5 104273647 104273732 -48263527 - B1F1 SINE Alu -60 89 1 7 1380 784 242 42 10 chr5 104274018 104274210 -48263049 + B3 SINE B2 19 216 0 7 1380 882 72 42 28 chr5 104275593 104275736 -48261523 - L1Md_F2 LINE L1 0 6582 6438 7 1380 22 0 0 0 chr5 104276209 104276231 -48261028 + AT_rich Low_complexity Low_complexity 1 22 0 7 1380 677 167 20 92 chr5 104276251 104276403 -48260856 - B1_Mur2 SINE Alu -8 141 1 7 1380 239 257 99 14 chr5 104277328 104277399 -48259860 - PB1D10 SINE Alu -1 116 40 7 1380 1806 116 78 68 chr5 104279145 104279286 -48257973 - Lx LINE L1 0 6654 6519 7 1380 186 43 0 0 chr5 104279286 104279309 -48257950 + (CCCA)n Simple_repeat Simple_repeat 3 25 0 7 1380 1806 118 75 71 chr5 104279309 104279575 -48257684 - Lx LINE L1 -118 6518 6248 7 1380 27 0 0 0 chr5 104280225 104280252 -48257007 + AT_rich Low_complexity Low_complexity 1 27 0 7 1380 38 39 0 0 chr5 104283762 104283814 -48253445 + AT_rich Low_complexity Low_complexity 1 52 0 7 1380 412 204 40 79 chr5 104285167 104285268 -48251991 + RSINE1 SINE B4 1 97 -68 7 1380 311 311 80 6 chr5 104285529 104285691 -48251568 + L1M4 LINE L1 5430 5603 -575 7 1380 300 28 0 0 chr5 104286047 104286083 -48251176 - HAL1-3A_ME LINE L1 -847 2011 1976 7 1380 294 205 0 0 chr5 104286092 104286175 -48251084 + (TG)n Simple_repeat Simple_repeat 2 84 0 7 1380 340 83 0 20 chr5 104286206 104286255 -48251004 - HAL1-3A_ME LINE L1 -846 2012 1965 7 1380 396 266 212 0 chr5 104286295 104286408 -48250851 + RSINE1 SINE B4 3 139 -26 7 1380 341 43 21 0 chr5 104286411 104286458 -48250801 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1380 682 231 42 0 chr5 104287054 104287197 -48250062 + B1F SINE Alu 1 149 0 7 1380 303 227 155 0 chr5 104288279 104288376 -48248883 + PB1D7 SINE Alu 3 114 -6 7 1380 544 273 115 21 chr5 104288858 104289101 -48248158 - Lx8 LINE L1 -1099 6374 6109 7 1380 255 302 39 85 chr5 104290030 104290160 -48247099 + RLTR42-int LTR ERVK 1198 1321 -4201 7 1380 461 348 54 13 chr5 104290663 104290902 -48246357 + B4A SINE B4 26 274 -18 7 1380 22 0 0 30 chr5 104292330 104292345 -48244914 + AT_rich Low_complexity Low_complexity 1 15 0 7 1380 1302 97 11 0 chr5 104292345 104292521 -48244738 - B2_Mm1t SINE B2 -15 178 1 7 1380 22 0 0 30 chr5 104292521 104292538 -48244721 + AT_rich Low_complexity Low_complexity 1 17 0 7 1380 392 295 74 0 chr5 104292541 104292663 -48244596 + MER44B DNA MER2_type 1 131 -419 7 1380 476 264 76 47 chr5 104292703 104292874 -48244385 + MER44B DNA MER2_type 258 433 -117 7 1380 674 224 43 43 chr5 104293519 104293659 -48243600 + B1_Mur4 SINE Alu 11 150 0 7 1380 216 167 0 23 chr5 104293826 104293869 -48243390 - PB1D9 SINE Alu -7 113 72 7 1380 264 190 41 18 chr5 104293842 104293904 -48243355 - B1F1 SINE Alu -52 68 3 7 1380 215 303 76 0 chr5 104293854 104293920 -48243339 - ID_B1 SINE B4 -88 136 66 7 1380 994 80 66 0 chr5 104294404 104294541 -48242718 + B1_Mus1 SINE Alu 2 147 -1 7 1380 246 318 0 0 chr5 104294868 104294931 -48242328 + ID4 SINE ID 4 66 -17 7 1380 318 237 53 0 chr5 104295090 104295166 -48242093 - ID4 SINE ID -3 80 1 7 1380 780 172 14 20 chr5 104296190 104296338 -48240921 - B1F2 SINE Alu -1 148 2 7 1380 284 253 0 39 chr5 104297598 104297676 -48239583 - ID4_ SINE ID -4 79 5 7 1380 1133 60 0 0 chr5 104297876 104298010 -48239249 + B1_Mus1 SINE Alu 2 135 -13 7 1380 384 22 0 0 chr5 104298010 104298055 -48239204 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 7 1380 701 264 62 2 chr5 104298296 104298479 -48238780 + B3A SINE B2 1 190 -26 7 1380 362 247 35 12 chr5 104298627 104298713 -48238546 - MER20 DNA MER1_type -37 182 95 7 1380 525 209 95 54 chr5 104298857 104299004 -48238255 + RSINE1 SINE B4 3 155 -10 7 1380 716 222 27 5 chr5 104299197 104299373 -48237886 - B3A SINE B2 -34 182 8 7 1380 835 185 115 16 chr5 104300281 104300473 -48236786 + B3 SINE B2 2 212 -4 7 1380 662 275 34 0 chr5 104300501 104300679 -48236580 + ID_B1 SINE B4 1 184 -40 7 1380 566 219 19 0 chr5 104300764 104300869 -48236390 - PB1D10 SINE Alu -9 108 2 7 1380 185 195 0 24 chr5 104301439 104301481 -48235778 - L2 LINE L2 -1611 1808 1768 7 1380 762 92 140 16 chr5 104301704 104301843 -48235416 + MT2B LTR ERVL 1 150 -383 7 1380 1314 67 78 0 chr5 104302374 104302554 -48234705 + B2_Mm2 SINE B2 2 195 0 7 1380 361 230 10 94 chr5 104302864 104302960 -48234299 - B1_Mur1 SINE Alu -41 108 21 7 1380 506 264 49 21 chr5 104303755 104303898 -48233361 + B1F SINE Alu 1 147 -2 7 1380 779 316 19 0 chr5 104303928 104304140 -48233119 - ID_B1 SINE B4 -3 221 6 7 1380 266 257 14 28 chr5 104305585 104305657 -48231602 + tRNA-Ala-GCA tRNA tRNA 1 71 -4 7 1380 998 199 60 94 chr5 104305781 104306164 -48231095 + ORR1D1 LTR MaLR 2 371 -3 7 1380 1048 91 28 0 chr5 104306443 104306586 -48230673 + B1_Mus1 SINE Alu 2 148 0 7 1380 281 0 77 0 chr5 104306588 104306627 -48230632 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 7 1380 207 0 0 0 chr5 104307776 104307799 -48229460 + (TTA)n Simple_repeat Simple_repeat 2 24 0 7 1380 22 35 0 0 chr5 104308126 104308155 -48229104 + AT_rich Low_complexity Low_complexity 1 29 0 7 1380 244 279 103 92 chr5 104308238 104308412 -48228847 + MLT2B4 LTR ERVL 93 268 -288 7 1380 792 275 62 27 chr5 104308437 104308695 -48228564 + MLT1A1 LTR MaLR 77 343 -65 7 1380 204 40 0 0 chr5 104308922 104308947 -48228312 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1380 1084 174 15 20 chr5 104308998 104309197 -48228062 + B3 SINE B2 1 198 -18 7 1380 227 241 52 0 chr5 104309433 104309491 -48227768 + tRNA-Ala-GCY_ tRNA tRNA 15 75 0 7 1380 591 141 223 0 chr5 104310240 104310361 -48226898 + B1_Mur4 SINE Alu 2 149 -1 7 1380 5238 142 143 13 chr5 104310384 104311395 -48225864 + L1_Mur3 LINE L1 3449 4591 -1289 7 1380 1120 214 96 15 chr5 104311461 104311732 -48225527 - Lx6 LINE L1 -7 7453 7161 7 1380 277 301 12 0 chr5 104311869 104311952 -48225307 - Lx7 LINE L1 -243 7453 7370 7 1380 239 220 100 0 chr5 104311960 104312010 -48225249 - Lx6 LINE L1 -494 6966 6912 7 1380 279 160 0 0 chr5 104312014 104312064 -48225195 + Lx7 LINE L1 4582 4631 -1249 7 1380 4267 224 69 23 chr5 104312114 104313913 -48223346 + Lx7 LINE L1 4768 6653 -1043 7 1380 2433 188 43 10 chr5 104313906 104314415 -48222844 + Lx7 LINE L1 6882 7407 -289 7 1380 225 62 20 40 chr5 104314420 104314470 -48222789 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1380 183 139 0 0 chr5 104314505 104314541 -48222718 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7 1380 392 202 85 37 chr5 104314699 104314781 -48222478 + B1F1 SINE Alu 6 91 -58 7 1380 234 105 0 0 chr5 104315064 104315102 -48222157 + (CTG)n Simple_repeat Simple_repeat 1 38 0 7 1380 326 206 100 30 chr5 104316439 104316626 -48220633 + MLT1E1A LTR MaLR 360 675 -5 7 1380 494 338 7 34 chr5 104316708 104316855 -48220404 - RSINE1 SINE B4 -17 148 6 7 1380 357 24 0 0 chr5 104317110 104317152 -48220107 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1380 234 253 82 24 chr5 104317217 104317302 -48219957 + L1MD2 LINE L1 6247 6336 -23 7 1380 238 192 13 52 chr5 104317333 104317410 -48219849 + L1MEc LINE L1 2368 2441 -3959 7 1380 247 344 32 11 chr5 104317553 104317647 -48219612 + B1F SINE Alu 50 145 -4 7 1380 249 279 176 0 chr5 104317651 104317719 -48219540 + ID4 SINE ID 4 83 0 7 1380 242 302 50 41 chr5 104317752 104317873 -48219386 + L1M2 LINE L1 4917 5038 -1105 7 1380 417 263 125 34 chr5 104318622 104318886 -48218373 + L1MEc LINE L1 4629 4916 -1403 7 1380 627 276 101 58 chr5 104319176 104319434 -48217825 - B4 SINE B4 0 292 24 7 1380 287 277 48 29 chr5 104319476 104319580 -48217679 + L1MC3 LINE L1 7155 7260 -525 7 1380 480 236 94 0 chr5 104319690 104319817 -48217442 + L1MC3 LINE L1 7428 7566 -219 7 1380 248 271 0 40 chr5 104319817 104319849 -48217410 + A-rich Low_complexity Low_complexity 1 31 0 7 1380 5937 58 71 0 chr5 104319849 104320608 -48216651 + Lx3_Mus LINE L1 6197 7009 0 7 1380 248 271 0 40 chr5 104320608 104320675 -48216584 + A-rich Low_complexity Low_complexity 32 96 0 8 1380 740 235 92 25 chr5 104320712 104320953 -48216306 + MTD LTR MaLR 3 254 -153 8 1380 185 132 0 26 chr5 104321087 104321126 -48216133 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 8 1380 1239 42 0 0 chr5 104321799 104321943 -48215316 + B1_Mus2 SINE Alu 2 145 -2 8 1380 1277 89 33 6 chr5 104322020 104322200 -48215059 + B2_Mm1t SINE B2 2 186 -7 8 1380 234 282 86 66 chr5 104322251 104322403 -48214856 + L1M5 LINE L1 5002 5156 -990 8 1380 262 219 120 0 chr5 104322418 104322486 -48214773 + ID2 SINE ID 2 77 -75 8 1380 525 191 146 25 chr5 104322578 104322777 -48214482 + L1MEc LINE L1 5430 5652 -763 7 1380 324 284 101 21 chr5 104322808 104323031 -48214228 + L1_Mur2 LINE L1 5095 5317 -569 8 1380 410 342 134 33 chr5 104323031 104323330 -48213929 + L1M5 LINE L1 5433 5761 -418 8 1380 225 0 0 0 chr5 104323742 104323767 -48213492 + (CAG)n Simple_repeat Simple_repeat 1 25 0 8 1380 184 237 133 17 chr5 104323776 104323836 -48213423 - MIR SINE MIR -33 229 163 8 1380 225 196 98 0 chr5 104324429 104324480 -48212779 - BC1_Mm scRNA scRNA -79 73 18 8 1380 204 138 51 41 chr5 104324698 104324796 -48212463 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 8 1380 1264 27 7 0 chr5 104324871 104325017 -48212242 - B1_Mm SINE Alu 0 147 1 8 1380 21 71 0 0 chr5 104325057 104325099 -48212160 + AT_rich Low_complexity Low_complexity 1 42 0 8 1380 210 307 21 93 chr5 104325145 104325242 -48212017 + B4A SINE B4 3 92 -200 8 1380 632 283 78 27 chr5 104325351 104325569 -48211690 + B4 SINE B4 73 292 0 8 1380 231 204 0 0 chr5 104325576 104325630 -48211629 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 8 1380 920 47 0 0 chr5 104327897 104328004 -48209255 + U6 snRNA snRNA 1 107 0 8 1380 3080 48 0 5 chr5 104328004 104328379 -48208880 + L1Md_F2 LINE L1 5213 5585 -298 8 1380 7932 62 1 4 chr5 104328380 104329376 -48207883 + L1Md_F2 LINE L1 5587 6579 -3 8 1380 1057 98 104 0 chr5 104329424 104329588 -48207671 + B2_Mm2 SINE B2 1 181 -14 8 1380 380 88 286 103 chr5 104329691 104329817 -48207442 + B2_Mm2 SINE B2 47 195 0 8 1380 353 274 183 28 chr5 104329826 104330006 -48207253 + B4A SINE B4 5 212 -80 8 1380 282 95 0 0 chr5 104330029 104330071 -48207188 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1380 407 196 0 45 chr5 104330485 104330661 -48206598 + (CACAC)n Simple_repeat Simple_repeat 3 170 0 8 1380 459 278 43 0 chr5 104330871 104330986 -48206273 + B1F SINE Alu 17 136 -13 8 1380 606 256 23 23 chr5 104330985 104330997 -48206262 - B3 SINE B2 -5 211 200 8 1380 186 43 0 0 chr5 104330997 104331020 -48206239 + (ATTG)n Simple_repeat Simple_repeat 4 26 0 8 1380 606 259 23 30 chr5 104331020 104331200 -48206059 - B3 SINE B2 -17 199 16 8 1380 278 317 65 24 chr5 104331748 104331871 -48205388 + B1F SINE Alu 22 149 0 8 1380 415 221 127 87 chr5 104331897 104332070 -48205189 + B3A SINE B2 3 182 -16 8 1380 326 220 46 47 chr5 104332279 104332385 -48204874 - MTEa LTR MaLR -2 377 264 8 1380 1268 127 86 24 chr5 104332960 104333170 -48204089 - URR1B DNA MER1_type 0 225 3 8 1381 491 214 83 15 chr5 104333998 104334131 -48203128 + B1F SINE Alu 1 142 -7 8 1381 233 221 59 0 chr5 104334134 104334202 -48203057 + Kanga1 DNA Tc2 1471 1542 -203 8 1381 604 185 0 0 chr5 104334208 104334316 -48202943 + B1_Mur1 SINE Alu 25 132 -17 8 1381 180 0 0 0 chr5 104334503 104334523 -48202736 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1381 311 256 35 35 chr5 104334857 104334942 -48202317 - MER58B DNA MER1_type -2 339 255 8 1381 1195 81 0 0 chr5 104335101 104335249 -48202010 - B1_Mus1 SINE Alu 0 148 1 8 1381 354 98 0 0 chr5 104335739 104335790 -48201469 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1381 192 226 128 23 chr5 104335859 104335945 -48201314 - MIRb SINE MIR -140 128 34 8 1381 511 53 13 13 chr5 104337213 104337289 -48199970 + (TG)n Simple_repeat Simple_repeat 1 76 0 8 1381 428 250 18 18 chr5 104337387 104337497 -48199762 + PB1D10 SINE Alu 6 115 -2 8 1381 385 275 103 9 chr5 104337878 104338091 -48199168 - MIRc SINE MIR -34 234 2 8 1381 455 237 57 36 chr5 104338406 104338546 -48198713 + B1_Mur4 SINE Alu 1 143 -7 8 1381 591 244 165 0 chr5 104338636 104338800 -48198459 - ID_B1 SINE B4 -8 216 26 8 1381 21 95 0 0 chr5 104340140 104340203 -48197056 + GC_rich Low_complexity Low_complexity 1 63 0 8 1381 222 37 0 0 chr5 104340281 104340308 -48196951 + (CGGGG)n Simple_repeat Simple_repeat 3 29 0 8 1381 423 0 0 0 chr5 104341110 104341157 -48196102 + (TAA)n Simple_repeat Simple_repeat 2 48 0 8 1381 430 186 112 26 chr5 104341847 104341963 -48195296 + B1F SINE Alu 24 149 0 8 1381 440 149 0 0 chr5 104342133 104342207 -48195052 + B3 SINE B2 3 76 -140 8 1381 2384 182 27 42 chr5 104342215 104342741 -48194518 + RLTR28 LTR ERVL 7 524 0 8 1381 527 215 90 8 chr5 104342742 104342864 -48194395 + B3 SINE B2 80 211 -5 8 1381 236 284 0 0 chr5 104343808 104343872 -48193387 + ID4 SINE ID 9 72 -80 8 1381 1110 108 49 49 chr5 104343978 104344163 -48193096 - B2_Mm2 SINE B2 -9 186 2 8 1381 807 182 0 20 chr5 104344170 104344316 -48192943 - B1_Mus1 SINE Alu 0 148 6 8 1381 309 262 80 53 chr5 104344402 104344515 -48192744 - B1F SINE Alu -1 116 1 8 1381 1598 27 32 0 chr5 104344531 104344717 -48192542 - B2_Mm1a SINE B2 0 193 2 8 1381 309 26 0 0 chr5 104345074 104345112 -48192147 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1381 484 291 89 97 chr5 104345547 104345965 -48191294 + MER21B LTR ERV1 345 716 -147 8 1381 321 68 0 0 chr5 104346825 104346869 -48190390 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1381 339 276 6 0 chr5 104346884 104347055 -48190204 + (TG)n Simple_repeat Simple_repeat 1 172 0 8 1381 246 208 62 0 chr5 104347057 104347105 -48190154 - BC1_Mm scRNA scRNA -88 64 14 8 1381 535 186 186 0 chr5 104347203 104347321 -48189938 - ID_B1 SINE B4 -4 220 81 8 1381 3278 48 5 15 chr5 104347514 104347918 -48189341 + MTB LTR MaLR 1 400 0 8 1381 272 326 105 33 chr5 104348049 104348230 -48189029 - LTR33 LTR ERVL -299 216 23 8 1381 437 326 52 13 chr5 104348434 104348667 -48188592 - MER2 DNA MER2_type -7 338 97 8 1381 244 368 0 33 chr5 104348708 104348798 -48188461 - MER2B DNA MER2_type -171 165 79 8 1381 940 217 110 20 chr5 104348845 104349099 -48188160 - B4A SINE B4 -14 278 2 8 1381 1354 68 11 6 chr5 104349285 104349462 -48187797 + B2_Mm1t SINE B2 2 179 -14 8 1381 21 0 0 0 chr5 104349817 104349838 -48187421 + GC_rich Low_complexity Low_complexity 1 21 0 8 1381 875 274 87 37 chr5 104350532 104350854 -48186405 + MTE2b LTR MaLR 2 339 -40 8 1381 873 142 0 20 chr5 104351165 104351316 -48185943 + B1_Mur4 SINE Alu 2 149 -1 8 1381 365 102 17 0 chr5 104351429 104351488 -48185771 + (TTTTC)n Simple_repeat Simple_repeat 2 61 0 8 1381 593 298 76 14 chr5 104351489 104351700 -48185559 - B4A SINE B4 -68 224 1 8 1381 311 229 47 35 chr5 104351812 104351898 -48185361 + PB1D10 SINE Alu 19 105 -12 8 1381 300 120 47 24 chr5 104352097 104352182 -48185077 + (CAGAGA)n Simple_repeat Simple_repeat 1 87 0 8 1381 2065 188 44 29 chr5 104352194 104352644 -48184615 - MT2A LTR ERVL -76 457 1 8 1381 234 116 23 23 chr5 104353639 104353683 -48183576 + LTRIS2 LTR ERV1 455 498 -66 8 1381 519 17 0 0 chr5 104354103 104354163 -48183096 + (TTCC)n Simple_repeat Simple_repeat 2 61 0 8 1381 838 191 7 0 chr5 104354258 104354405 -48182854 - B1_Mur2 SINE Alu -1 148 1 8 1381 401 284 10 10 chr5 104354511 104354614 -48182645 - Lx8 LINE L1 -1024 6449 6347 8 1381 684 182 37 15 chr5 104354740 104354874 -48182385 + B1_Mur1 SINE Alu 5 141 -8 8 1381 408 88 0 0 chr5 104354880 104354937 -48182322 + (GAAAA)n Simple_repeat Simple_repeat 3 59 0 8 1381 21 57 0 0 chr5 104355118 104355153 -48182106 + AT_rich Low_complexity Low_complexity 1 35 0 8 1381 605 14 14 0 chr5 104355308 104355382 -48181877 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 8 1381 1266 14 0 0 chr5 104355384 104355525 -48181734 - B1_Mm SINE Alu -6 141 1 8 1381 436 200 191 69 chr5 104355529 104355717 -48181542 - B3 SINE B2 -3 213 3 8 1381 23 0 0 0 chr5 104355729 104355752 -48181507 + AT_rich Low_complexity Low_complexity 1 23 0 8 1381 506 226 95 0 chr5 104355781 104355918 -48181341 - RSINE1 SINE B4 -13 152 3 8 1381 219 227 0 22 chr5 104356275 104356320 -48180939 + polypurine Low_complexity Low_complexity 1 44 0 8 1381 41 72 0 0 chr5 104356337 104356420 -48180839 + AT_rich Low_complexity Low_complexity 1 83 0 8 1381 1484 224 82 8 chr5 104358164 104358529 -48178730 + MTD LTR MaLR 28 419 0 8 1381 255 333 0 12 chr5 104358529 104358613 -48178646 + RSINE1 SINE B4 52 134 -31 8 1381 372 22 0 0 chr5 104358651 104358696 -48178563 + (GGAA)n Simple_repeat Simple_repeat 2 46 0 8 1381 2109 187 167 36 chr5 104358696 104359223 -48178036 - RMER12 LTR ERVK -528 794 196 8 1381 3032 52 52 5 chr5 104359223 104359625 -48177634 - BGLII LTR ERVK 0 421 1 8 1381 2109 197 165 33 chr5 104359625 104359749 -48177510 - RMER12 LTR ERVK -1127 195 59 8 1381 402 115 0 0 chr5 104360124 104360185 -48177074 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 8 1381 316 181 77 88 chr5 104360406 104360425 -48176834 - L1_Mm LINE L1 -801 5499 5487 8 1381 691 206 0 41 chr5 104360425 104360572 -48176687 - B1_Mur3 SINE Alu -8 141 1 8 1381 316 155 111 38 chr5 104360572 104360650 -48176609 - L1_Mm LINE L1 -814 5486 5374 8 1381 4420 131 54 74 chr5 104360650 104361570 -48175689 - RLTR13D6 LTR ERVK 0 902 1 8 1381 320 268 120 10 chr5 104361576 104361776 -48175483 - L1M2 LINE L1 -744 5399 5178 8 1381 561 266 116 36 chr5 104361805 104362167 -48175092 - L1M2 LINE L1 -1096 5047 4644 8 1381 1731 223 16 58 chr5 104362186 104362470 -48174789 - MTD LTR MaLR -9 410 125 8 1381 6655 49 31 14 chr5 104362470 104363315 -48173944 + L1Md_F2 LINE L1 5724 6582 0 8 1381 1731 223 16 58 chr5 104363315 104363343 -48173916 - MTD LTR MaLR -295 124 115 8 1381 345 47 0 0 chr5 104363343 104363386 -48173873 + (GA)n Simple_repeat Simple_repeat 2 44 0 9 1381 1731 223 16 58 chr5 104363386 104363500 -48173759 - MTD LTR MaLR -305 114 1 8 1381 249 266 0 15 chr5 104363533 104363598 -48173661 + RSINE1 SINE B4 13 76 -89 9 1381 3453 179 111 25 chr5 104363608 104364163 -48173096 + RMER12 LTR ERVK 205 767 -555 9 1381 432 55 0 0 chr5 104364163 104364218 -48173041 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 9 1381 3453 195 117 26 chr5 104364218 104364727 -48172532 + RMER12 LTR ERVK 768 1122 -200 9 1381 2460 59 23 3 chr5 104364842 104365184 -48172075 + IAPEY_LTR LTR ERVK 37 385 0 9 1381 185 328 59 25 chr5 104365390 104365509 -48171750 - MIRb SINE MIR -73 195 73 9 1381 3237 128 29 6 chr5 104366652 104367164 -48170095 + RLTR28 LTR ERVL 1 524 0 9 1381 351 333 0 0 chr5 104368469 104368565 -48168694 - B1_Mur2 SINE Alu -52 97 2 9 1381 494 288 86 14 chr5 104368577 104368799 -48168460 + MTEb-int LTR MaLR 1339 1576 -4 9 1381 243 259 0 0 chr5 104368801 104368855 -48168404 + MTEb LTR MaLR 1 54 -325 9 1381 180 0 0 0 chr5 104368858 104368878 -48168381 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1381 567 132 0 0 chr5 104368878 104368969 -48168290 + (GA)n Simple_repeat Simple_repeat 2 92 0 9 1381 618 299 87 5 chr5 104368990 104369185 -48168074 + B4A SINE B4 72 282 -10 9 1381 421 312 146 31 chr5 104369251 104369539 -48167720 + MTEb LTR MaLR 52 372 -7 9 1381 2914 179 88 76 chr5 104369598 104370392 -48166867 + RLTR40 LTR ERVK 1 804 -13 9 1381 653 291 91 53 chr5 104370719 104371050 -48166209 - L1MB2 LINE L1 0 6171 5838 9 1381 471 35 0 0 chr5 104371050 104371107 -48166152 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 9 1381 1230 48 0 0 chr5 104371113 104371260 -48165999 - B1_Mus1 SINE Alu 0 148 2 9 1381 653 291 91 53 chr5 104371260 104371338 -48165921 - L1MB2 LINE L1 -340 5831 5739 9 1381 452 173 0 0 chr5 104371592 104371673 -48165586 + RLTR40 LTR ERVK 724 804 -13 9 1381 291 250 0 0 chr5 104371702 104371786 -48165473 + (TA)n Simple_repeat Simple_repeat 2 85 0 9 1381 412 202 0 0 chr5 104371786 104371865 -48165394 + RLTR40 LTR ERVK 721 799 -18 9 1381 185 196 0 19 chr5 104371886 104371938 -48165321 + (TA)n Simple_repeat Simple_repeat 1 51 0 9 1381 468 51 0 0 chr5 104372016 104372075 -48165184 + (TTCA)n Simple_repeat Simple_repeat 4 62 0 9 1381 208 367 0 0 chr5 104374412 104374551 -48162708 + (TCTA)n Simple_repeat Simple_repeat 2 140 0 9 1381 371 293 0 0 chr5 104374704 104374797 -48162462 + B1F1 SINE Alu 43 135 -15 9 1381 266 246 130 41 chr5 104375059 104375182 -48162077 + B1F1 SINE Alu 12 145 -4 9 1381 2568 58 3 3 chr5 104375457 104375806 -48161453 - IAPEY_LTR LTR ERVK 0 385 37 9 1381 21605 60 3 7 chr5 104375816 104378537 -48158722 - IAPEy-int LTR ERVK 0 7513 4804 9 1381 7052 115 8 15 chr5 104378537 104379603 -48157656 - IAPEy-int LTR ERVK -6455 1058 1 9 1381 2994 66 16 3 chr5 104379603 104379983 -48157276 - IAPEY_LTR LTR ERVK 0 385 1 9 1381 226 277 124 16 chr5 104380086 104380207 -48157052 - L1MC4a LINE L1 -9 7873 7740 9 1381 1198 68 0 0 chr5 104380210 104380357 -48156902 + B1_Mus1 SINE Alu 1 147 -1 9 1381 3601 106 69 15 chr5 104380599 104381137 -48156122 + RMER2 LTR ERV1 1 567 0 9 1381 366 280 9 9 chr5 104381262 104381370 -48155889 + MLT1A0 LTR MaLR 31 138 -227 9 1381 341 307 79 14 chr5 104383230 104383369 -48153890 + B1F1 SINE Alu 1 148 -1 9 1381 4234 160 61 73 chr5 104383411 104384310 -48152949 - RMER19B LTR ERVK -12 890 3 9 1381 450 0 0 0 chr5 104384310 104384360 -48152899 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1381 354 23 0 0 chr5 104384360 104384402 -48152857 + (GA)n Simple_repeat Simple_repeat 2 44 0 9 1381 2503 98 0 0 chr5 104384407 104384734 -48152525 - ORR1A2 LTR MaLR 0 327 1 9 1381 579 331 0 0 chr5 104384736 104384884 -48152375 - RSINE1 SINE B4 -14 151 4 9 1381 22 35 0 0 chr5 104384922 104384951 -48152308 + AT_rich Low_complexity Low_complexity 1 29 0 9 1381 881 258 10 0 chr5 104385145 104385354 -48151905 - B3 SINE B2 -5 211 1 9 1381 1824 84 0 20 chr5 104385688 104385932 -48151327 + MusHAL1 LINE L1 2 240 -3114 9 1381 288 158 105 0 chr5 104385934 104385991 -48151268 + RLTR14-int LTR ERV1 4270 4332 -985 9 1381 1146 96 62 11 chr5 104385993 104386172 -48151087 - B2_Mm2 SINE B2 -7 188 1 9 1381 4002 156 84 8 chr5 104386184 104386896 -48150363 + RLTR14-int LTR ERV1 4407 5172 -145 9 1381 365 118 0 0 chr5 104386907 104386958 -48150301 + RLTR14-int LTR ERV1 5267 5317 0 9 1381 2317 145 44 0 chr5 104386958 104387324 -48149935 + RLTR14 LTR ERV1 1 382 0 9 1381 336 64 0 0 chr5 104387549 104387596 -48149663 + (GA)n Simple_repeat Simple_repeat 2 48 0 9 1381 414 0 0 0 chr5 104387943 104387989 -48149270 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1381 753 167 0 0 chr5 104387989 104388139 -48149120 + GA-rich Low_complexity Low_complexity 1 150 0 9 1381 1156 68 0 0 chr5 104388196 104388343 -48148916 + B1_Mus2 SINE Alu 1 147 0 9 1381 7101 68 16 1 chr5 104388406 104390113 -48147146 + L1VL4 LINE L1 1 1734 -1825 9 1381 258 251 33 55 chr5 104390588 104390769 -48146490 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 9 1381 2091 259 32 4 chr5 104390799 104391430 -48145829 + Lx6 LINE L1 6133 6774 -922 9 1381 495 0 0 0 chr5 104391441 104391496 -48145763 + (GAA)n Simple_repeat Simple_repeat 1 55 0 9 1381 301 324 87 17 chr5 104391573 104391746 -48145513 + FordPrefect DNA Tip100 1447 1631 -52 9 1381 505 300 52 16 chr5 104394065 104394258 -48143001 + B4A SINE B4 34 233 -59 9 1381 752 201 12 0 chr5 104394274 104394443 -48142816 + GA-rich Low_complexity Low_complexity 2 172 0 9 1381 477 0 0 0 chr5 104396154 104396207 -48141052 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1381 252 0 0 0 chr5 104396207 104396235 -48141024 + (TGG)n Simple_repeat Simple_repeat 3 30 0 9 1381 242 183 133 0 chr5 104396370 104396430 -48140829 - tRNA-Ala-GCA tRNA tRNA -6 69 2 9 1381 687 127 33 7 chr5 104396979 104397130 -48140129 + (TG)n Simple_repeat Simple_repeat 2 156 0 9 1381 43 76 0 0 chr5 104397560 104397652 -48139607 + AT_rich Low_complexity Low_complexity 1 92 0 9 1381 228 269 0 0 chr5 104398190 104398242 -48139017 - ID SINE ID -141 83 32 9 1381 227 328 0 0 chr5 104398242 104398257 -48139002 - ID4 SINE ID -1 82 16 9 1381 558 324 6 11 chr5 104398927 104399108 -48138151 - RMER30 DNA MER1_type -2 200 21 9 1381 38 0 0 0 chr5 104399281 104399319 -48137940 + AT_rich Low_complexity Low_complexity 1 38 0 9 1381 1072 62 55 24 chr5 104399499 104399650 -48137609 + B2_Mm2 SINE B2 3 162 -33 9 1381 180 0 0 0 chr5 104399650 104399670 -48137589 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 9 1381 1072 62 55 24 chr5 104399670 104399683 -48137576 + B2_Mm2 SINE B2 163 172 -23 9 1381 209 318 67 11 chr5 104400618 104400707 -48136552 + MIRb SINE MIR 64 157 -111 9 1381 249 109 0 0 chr5 104400759 104400805 -48136454 + (T)n Simple_repeat Simple_repeat 1 46 0 9 1381 573 172 13 7 chr5 104400883 104401035 -48136224 + CT-rich Low_complexity Low_complexity 2 154 0 9 1381 230 330 53 0 chr5 104401047 104401141 -48136118 + RSINE1 SINE B4 54 152 -13 9 1381 387 0 0 0 chr5 104401142 104401185 -48136074 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1381 222 62 0 0 chr5 104402375 104402407 -48134852 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1381 360 235 126 22 chr5 104402411 104402546 -48134713 - B1F SINE Alu 0 149 1 9 1381 232 273 36 47 chr5 104403673 104403790 -48133469 - B1F SINE Alu 0 120 5 9 1381 345 311 44 17 chr5 104403812 104403992 -48133267 - L1MA4A LINE L1 -404 5899 5715 9 1381 288 0 0 0 chr5 104404888 104404920 -48132339 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 9 1381 213 256 0 196 chr5 104404983 104405085 -48132174 - ID2 SINE ID 0 83 2 9 1381 283 229 22 122 chr5 104405377 104405516 -48131743 - MER58C DNA MER1_type -14 201 77 9 1381 231 88 0 0 chr5 104405886 104405920 -48131339 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 9 1381 198 0 0 0 chr5 104406637 104406659 -48130600 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 1381 291 319 137 14 chr5 104406752 104406898 -48130361 + RSINE1 SINE B4 2 165 0 9 1381 662 211 0 6 chr5 104406929 104407105 -48130154 + (CA)n Simple_repeat Simple_repeat 2 176 0 9 1381 273 233 81 0 chr5 104407509 104407595 -48129664 - MLT1A0 LTR MaLR -254 111 19 9 1381 614 262 67 0 chr5 104407615 104407825 -48129434 + L1MB4 LINE L1 5718 5941 -239 9 1381 231 272 64 64 chr5 104408105 104408278 -48128981 + RMER2 LTR ERV1 395 567 0 9 1381 336 327 19 0 chr5 104408372 104408479 -48128780 + ID_B1 SINE B4 68 176 -48 9 1381 468 150 0 0 chr5 104408554 104408634 -48128625 + (CA)n Simple_repeat Simple_repeat 1 80 0 9 1381 662 262 42 26 chr5 104408799 104408991 -48128268 + B3A SINE B2 1 195 -3 9 1381 717 240 0 7 chr5 104409021 104409168 -48128091 + B1_Mur1 SINE Alu 1 146 -3 9 1381 636 266 25 25 chr5 104409195 104409392 -48127867 + B3A SINE B2 1 197 -1 9 1381 533 259 84 6 chr5 104409423 104409590 -48127669 + B3A SINE B2 3 182 -16 9 1381 2461 75 16 3 chr5 104409597 104409917 -48127342 + ORR1A2 LTR MaLR 3 326 -1 9 1381 372 258 39 31 chr5 104410142 104410270 -48126989 + RMER30 DNA MER1_type 11 139 -63 9 1381 466 221 57 9 chr5 104410761 104410866 -48126393 - PB1D10 SINE Alu -1 116 7 9 1381 1053 44 0 0 chr5 104411167 104411303 -48125956 + B1_Mus2 SINE Alu 12 147 0 9 1381 324 83 0 0 chr5 104411377 104411425 -48125834 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1381 331 217 316 12 chr5 104411730 104411898 -48125361 - ID_B1 SINE B4 -3 221 3 9 1381 33390 100 21 8 chr5 104412028 104416886 -48120373 + L1_Mus1 LINE L1 359 5292 -591 9 1381 1175 75 0 0 chr5 104416886 104417033 -48120226 + B1_Mm SINE Alu 1 147 0 9 1381 33390 66 9 2 chr5 104417033 104418303 -48118956 + L1_Mus1 LINE L1 5293 6553 -14 9 1381 234 194 0 0 chr5 104419259 104419321 -48117938 + C-rich Low_complexity Low_complexity 1 62 0 9 1381 243 0 0 0 chr5 104420001 104420028 -48117231 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 9 1381 536 247 159 0 chr5 104420544 104420590 -48116669 - B3A SINE B2 0 198 152 9 1381 324 0 0 0 chr5 104420590 104420626 -48116633 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1381 536 247 159 0 chr5 104420626 104420749 -48116510 - B3A SINE B2 -47 151 3 9 1381 329 241 0 114 chr5 104423107 104423308 -48113951 + (CAGTA)n Simple_repeat Simple_repeat 3 180 0 1 1381 210 156 0 0 chr5 104423887 104423932 -48113327 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1381 1152 265 63 9 chr5 104424144 104424494 -48112765 - RLTR18B LTR ERVK -5 507 139 1 1381 483 264 190 0 chr5 104424632 104424806 -48112453 + MER58B DNA MER1_type 1 207 -134 1 1381 299 199 15 26 chr5 104424821 104424898 -48112361 - RLTR18B LTR ERVK -433 79 1 1 1381 572 334 93 40 chr5 104424905 104425401 -48111858 + L1M4 LINE L1 2532 3053 -3093 1 1381 1741 203 48 29 chr5 104425423 104425839 -48111420 + Lx9 LINE L1 6665 7088 -556 1 1381 1451 196 227 8 chr5 104426388 104426742 -48110517 + Lx9 LINE L1 7054 7495 -149 1 1381 423 0 0 0 chr5 104426742 104426789 -48110470 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1381 1451 196 227 8 chr5 104426789 104426918 -48110341 + Lx9 LINE L1 7496 7642 -2 1 1381 287 160 0 0 chr5 104427351 104427401 -48109858 - B1F SINE Alu -13 136 87 1 1381 254 232 0 42 chr5 104427401 104427423 -48109836 - ID_B1 SINE B4 -13 211 143 1 1381 225 0 0 0 chr5 104427438 104427463 -48109796 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 1 1381 579 171 0 23 chr5 104427472 104427604 -48109655 + CT-rich Low_complexity Low_complexity 1 129 0 1 1381 1351 45 0 11 chr5 104427605 104427786 -48109473 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1 1381 248 322 106 11 chr5 104427877 104427971 -48109288 - B1F SINE Alu -46 103 1 1 1381 249 260 39 0 chr5 104428177 104428254 -48109005 + ID_B1 SINE B4 124 203 -21 1 1381 574 104 21 0 chr5 104428256 104428352 -48108907 + (GA)n Simple_repeat Simple_repeat 2 99 0 1 1381 28 0 0 0 chr5 104429067 104429095 -48108164 + AT_rich Low_complexity Low_complexity 1 28 0 1 1381 680 288 68 23 chr5 104429449 104429801 -48107458 + L1_Mur3 LINE L1 5106 5473 -407 1 1381 327 252 375 9 chr5 104429897 104430006 -48107253 + L1_Rod LINE L1 5545 5756 -400 1 1381 360 0 0 0 chr5 104430006 104430046 -48107213 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1381 327 252 375 9 chr5 104430046 104430152 -48107107 + L1_Rod LINE L1 5689 5838 -9 1 1381 263 157 98 0 chr5 104430120 104430171 -48107088 + L1MA4 LINE L1 5876 5931 -369 1 1381 347 233 10 72 chr5 104430237 104430334 -48106925 + B4A SINE B4 2 92 -200 1 1381 606 137 13 19 chr5 104430345 104430501 -48106758 + (CAGAGA)n Simple_repeat Simple_repeat 4 158 0 1 1381 1143 51 0 0 chr5 104430591 104430729 -48106530 + B1_Mus1 SINE Alu 1 138 -10 1 1381 189 0 0 0 chr5 104430729 104430750 -48106509 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1381 37 39 0 0 chr5 104431186 104431237 -48106022 + AT_rich Low_complexity Low_complexity 1 51 0 1 1381 795 252 98 15 chr5 104432851 104433117 -48104142 - B4A SINE B4 -3 289 2 1 1381 252 314 23 0 chr5 104433148 104433234 -48104025 + L2b LINE L2 3288 3375 0 1 1381 242 188 78 56 chr5 104433325 104433415 -48103844 - L1MB7 LINE L1 -2 6182 6091 1 1381 707 106 195 0 chr5 104433623 104433746 -48103513 - B1_Mur4 SINE Alu -3 147 1 1 1381 402 189 61 40 chr5 104434926 104435025 -48102234 - B1F1 SINE Alu 0 149 49 1 1381 338 276 27 45 chr5 104435149 104435259 -48102000 - B1F1 SINE Alu -31 118 11 1 1381 222 62 0 0 chr5 104435414 104435446 -48101813 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1381 231 88 0 0 chr5 104435452 104435486 -48101773 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1 1381 2614 171 145 56 chr5 104435540 104436272 -48100987 - RLTR40 LTR ERVK -16 801 5 1 1381 664 249 155 1 chr5 104436483 104436679 -48100580 + ID_B1 SINE B4 1 226 -66 1 1381 681 13 0 0 chr5 104436679 104436757 -48100502 + (GGGA)n Simple_repeat Simple_repeat 3 80 0 1 1381 277 319 152 18 chr5 104436757 104436777 -48100482 + B4A SINE B4 227 246 -46 1 1381 538 250 8 15 chr5 104438517 104438647 -48098612 + ID_B1 SINE B4 88 216 -8 1 1381 1086 95 136 6 chr5 104439027 104439196 -48098063 - B2_Mm2 SINE B2 -4 191 1 1 1381 852 45 0 0 chr5 104439690 104439802 -48097457 + B1_Mm SINE Alu 14 125 -22 1 1381 284 48 31 46 chr5 104439802 104439867 -48097392 + (CAAA)n Simple_repeat Simple_repeat 1 64 0 1 1381 1626 37 0 0 chr5 104440066 104440253 -48097006 + B2_Mm1a SINE B2 2 188 -5 1 1381 629 230 71 7 chr5 104440272 104440412 -48096847 + B1_Mur1 SINE Alu 1 149 0 1 1381 4899 283 119 42 chr5 104441774 104443745 -48093514 + L1_Mur3 LINE L1 2318 4439 -1441 1 1381 243 0 0 0 chr5 104443745 104443772 -48093487 + (GA)n Simple_repeat Simple_repeat 1 27 0 1 1381 4774 176 59 29 chr5 104443772 104444537 -48092722 + L1_Rod LINE L1 4433 5229 -618 1 1381 235 118 0 0 chr5 104444545 104444579 -48092680 - ORR1C2 LTR MaLR 0 384 351 1 1381 1375 209 12 0 chr5 104444584 104444833 -48092426 + Lx9 LINE L1 6523 6774 -870 1 1381 2411 94 96 6 chr5 104444833 104445214 -48092045 + MTC LTR MaLR 1 409 -12 1 1381 2349 199 27 0 chr5 104445214 104445662 -48091597 + Lx9 LINE L1 6782 7241 -403 1 1381 428 188 21 0 chr5 104445658 104445754 -48091505 + Lx9 LINE L1 7542 7639 -5 1 1381 639 92 29 66 chr5 104446378 104446731 -48090528 + (TG)n Simple_repeat Simple_repeat 1 339 0 1 1381 213 227 0 22 chr5 104446901 104446946 -48090313 - RSINE1 SINE B4 -110 55 12 1 1381 216 0 0 0 chr5 104447985 104448009 -48089250 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1381 225 0 0 0 chr5 104448177 104448202 -48089057 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 1381 319 267 21 53 chr5 104448202 104448297 -48088962 - B4A SINE B4 -77 215 124 1 1381 235 301 56 44 chr5 104448415 104448575 -48088684 - B4A SINE B4 -130 162 1 1 1381 246 282 141 33 chr5 104448916 104449037 -48088222 - Charlie5 DNA MER1_type -111 2513 2380 1 1381 316 194 27 14 chr5 104449152 104449225 -48088034 - ID4_ SINE ID -9 74 1 1 1381 675 287 21 31 chr5 104451652 104451846 -48085413 - B3 SINE B2 -21 195 4 1 1381 362 137 22 1 chr5 104451867 104451957 -48085302 - B1_Mur3 SINE Alu -7 142 45 1 1381 2082 147 22 53 chr5 104452238 104452649 -48084610 - RMER10B LTR ERVL 0 398 1 1 1381 404 230 11 11 chr5 104453019 104453107 -48084152 + ID_B1 SINE B4 84 171 -53 1 1381 366 274 16 89 chr5 104453107 104453119 -48084140 + PB1D10 SINE Alu 3 103 -14 1 1381 794 191 7 7 chr5 104453119 104453261 -48083998 + B1F2 SINE Alu 1 142 -7 1 1381 366 274 16 89 chr5 104453261 104453284 -48083975 + PB1D10 SINE Alu 104 117 0 1 1381 254 293 131 29 chr5 104453306 104453443 -48083816 + MIR SINE MIR 68 218 -44 1 1381 1593 26 0 81 chr5 104453443 104453653 -48083606 + B2_Mm1a SINE B2 1 193 0 1 1381 834 256 0 29 chr5 104453824 104454033 -48083226 - B3 SINE B2 -9 207 5 1 1381 180 289 106 67 chr5 104455112 104455216 -48082043 - L2c LINE L2 -9 3378 3271 1 1381 186 250 0 0 chr5 104455276 104455332 -48081927 + G-rich Low_complexity Low_complexity 1 56 0 1 1381 687 182 68 0 chr5 104455506 104455638 -48081621 + B3 SINE B2 57 197 -19 1 1381 387 312 104 31 chr5 104455969 104456191 -48081068 + MIR SINE MIR 6 243 -19 1 1381 1289 75 52 6 chr5 104456878 104457051 -48080208 + B2_Mm2 SINE B2 1 181 -14 1 1381 383 138 13 0 chr5 104457083 104457154 -48080105 + B2_Mm2 SINE B2 47 121 -95 1 1381 465 19 0 0 chr5 104457162 104457216 -48080043 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 1 1381 882 310 95 33 chr5 104457227 104457678 -48079581 - RMER5 LTR ERV1 -9 525 47 1 1381 632 265 164 109 chr5 104457734 104457925 -48079334 - L1MB7 LINE L1 -272 5912 5710 1 1381 410 257 103 14 chr5 104457925 104458071 -48079188 + RSINE1 SINE B4 3 161 -4 1 1381 632 265 164 109 chr5 104458071 104458374 -48078885 - L1MB7 LINE L1 -475 5709 5391 1 1381 751 221 72 44 chr5 104458485 104458800 -48078459 - L1MB7 LINE L1 -755 5391 5043 1 1381 413 256 178 25 chr5 104459478 104459711 -48077548 - RMER20B LTR ERVK -124 392 133 1 1381 1807 177 78 29 chr5 104460221 104460604 -48076655 - RMER1B Other Other -3 1063 662 1 1381 2873 25 0 0 chr5 104460611 104460933 -48076326 - RLTRETN_Mm LTR ERVK 0 322 1 1 1381 3527 41 84 5 chr5 104462488 104462928 -48074331 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1381 1082 83 0 20 chr5 104463086 104463098 -48074161 - B1_Mus1 SINE Alu -1 147 137 1 1381 216 0 0 0 chr5 104463098 104463122 -48074137 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1 1381 1082 83 0 20 chr5 104463122 104463256 -48074003 - B1_Mus1 SINE Alu -12 136 4 1 1381 301 211 99 21 chr5 104463521 104463615 -48073644 - MTD LTR MaLR -1 418 284 1 1381 465 34 0 0 chr5 104463987 104464046 -48073213 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1381 334 398 15 5 chr5 104464128 104464330 -48072929 - HERV16-int LTR ERVL -2098 2898 2695 1 1382 206 192 38 19 chr5 104465756 104465809 -48071450 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1382 806 301 48 8 chr5 104465811 104466062 -48071197 - B4A SINE B4 0 292 32 1 1382 261 0 0 0 chr5 104466244 104466273 -48070986 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1382 316 363 49 33 chr5 104466504 104466749 -48070510 + LTR41 LTR ERVL 513 761 -7 1 1382 2432 42 0 0 chr5 104466773 104467059 -48070200 - L1Md_A LINE L1 0 6582 6297 1 1382 1190 55 0 20 chr5 104467070 104467219 -48070040 - B1_Mm SINE Alu 0 147 2 1 1382 240 258 109 33 chr5 104467788 104467880 -48069379 - LTR16E2 LTR ERVL -198 370 272 1 1382 921 86 0 0 chr5 104467903 104468031 -48069228 + (TTTC)n Simple_repeat Simple_repeat 2 129 0 1 1382 953 75 105 0 chr5 104468037 104468170 -48069089 - B1_Mus1 SINE Alu 0 148 2 1 1382 439 248 102 42 chr5 104468701 104468819 -48068440 + B3 SINE B2 65 189 -27 1 1382 373 278 19 0 chr5 104469051 104469159 -48068100 - PB1D10 SINE Alu -6 111 2 1 1382 823 244 19 9 chr5 104469839 104470050 -48067209 - B3 SINE B2 0 216 4 1 1382 1097 50 57 0 chr5 104470634 104470775 -48066484 - B1_Mur3 SINE Alu 0 149 1 1 1382 390 111 18 0 chr5 104470793 104470858 -48066401 - B1_Mm SINE Alu 0 147 52 1 1382 456 314 90 74 chr5 104470927 104471163 -48066096 + MLT1D LTR MaLR 219 498 -7 1 1382 260 306 107 0 chr5 104471439 104471522 -48065737 - MIR SINE MIR -111 165 66 1 1382 404 284 163 72 chr5 104471526 104471887 -48065372 + LTR81A LTR ERV1? 5 398 -995 1 1382 416 211 96 0 chr5 104472279 104472383 -48064876 - PB1D9 SINE Alu -5 115 2 1 1382 312 27 0 0 chr5 104472516 104472553 -48064706 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1382 238 226 0 36 chr5 104473309 104473364 -48063895 - ID_B1 SINE B4 -33 191 139 1 1382 771 218 0 0 chr5 104473502 104473644 -48063615 - B1_Mur2 SINE Alu -7 142 1 1 1382 504 231 18 9 chr5 104473670 104473779 -48063480 - PB1D10 SINE Alu -7 110 1 1 1382 358 169 39 13 chr5 104473834 104473912 -48063347 + RMER5 LTR ERV1 33 112 -422 1 1382 733 237 181 32 chr5 104473933 104474243 -48063016 + RMER5 LTR ERV1 179 534 0 1 1382 839 223 29 39 chr5 104474291 104474496 -48062763 + B3 SINE B2 2 204 -12 1 1382 197 33 0 32 chr5 104474509 104474540 -48062719 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1382 291 271 70 12 chr5 104474555 104474641 -48062618 - MER67A LTR ERV1 -20 523 433 1 1382 180 0 0 0 chr5 104474723 104474743 -48062516 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1382 241 231 188 25 chr5 104477261 104477341 -48059918 + Lx8 LINE L1 7228 7320 -153 1 1382 239 195 22 7 chr5 104477385 104477469 -48059790 + B3 SINE B2 1 86 -112 1 1382 397 160 11 11 chr5 104478106 104478176 -48059083 + CT-rich Low_complexity Low_complexity 25 95 0 1 1382 1248 35 7 0 chr5 104478176 104478321 -48058938 - B1_Mus2 SINE Alu -1 146 1 1 1382 397 160 11 11 chr5 104478321 104478345 -48058914 + polypyrimidine Low_complexity Low_complexity 2 24 0 1 1382 524 140 11 0 chr5 104478336 104478429 -48058830 + C-rich Low_complexity Low_complexity 3 96 0 1 1382 24 0 0 0 chr5 104478662 104478686 -48058573 + AT_rich Low_complexity Low_complexity 1 24 0 1 1382 306 0 0 0 chr5 104478692 104478726 -48058533 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1382 332 299 212 30 chr5 104478732 104478963 -48058296 - B4A SINE B4 -16 276 4 1 1382 541 209 45 0 chr5 104479333 104479443 -48057816 - B3A SINE B2 -48 150 36 1 1382 472 286 100 47 chr5 104480301 104480602 -48056657 - L1MA9 LINE L1 0 6312 5996 1 1382 903 260 10 0 chr5 104480672 104480880 -48056379 + B3 SINE B2 1 210 -6 1 1382 413 319 84 16 chr5 104481032 104481354 -48055905 - L1MA6 LINE L1 -51 6249 5906 1 1382 452 264 169 0 chr5 104481481 104481659 -48055600 + B4 SINE B4 2 209 -83 1 1382 588 264 68 34 chr5 104481843 104482078 -48055181 + L1MA6 LINE L1 6053 6295 -5 1 1382 866 135 42 21 chr5 104482515 104482659 -48054600 - B1_Mus1 SINE Alu 0 148 2 1 1382 542 207 120 14 chr5 104483733 104483875 -48053384 + RSINE1 SINE B4 8 164 -1 1 1382 243 285 136 57 chr5 104484130 104484394 -48052865 + B4A SINE B4 3 287 -5 1 1382 543 53 0 0 chr5 104484661 104484736 -48052523 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1382 436 244 0 0 chr5 104484811 104484889 -48052370 + B1F SINE Alu 1 78 -71 1 1382 370 283 90 104 chr5 104484973 104485174 -48052085 - RMER30 DNA MER1_type 0 202 5 1 1382 27 0 0 0 chr5 104485387 104485414 -48051845 + AT_rich Low_complexity Low_complexity 1 27 0 1 1382 186 284 105 26 chr5 104487369 104487445 -48049814 + MIRb SINE MIR 22 103 -165 1 1382 269 287 41 31 chr5 104489381 104489478 -48047781 - B4 SINE B4 0 292 195 1 1382 1107 114 0 0 chr5 104490022 104490322 -48046937 + (CA)n Simple_repeat Simple_repeat 1 300 0 1 1382 1272 39 0 0 chr5 104490326 104490479 -48046780 - B2_Mm2 SINE B2 -42 153 1 1 1382 324 48 0 0 chr5 104490503 104490545 -48046714 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1382 574 189 33 48 chr5 104492667 104492818 -48044441 - B1F SINE Alu 0 149 1 1 1382 352 128 536 39 chr5 104492924 104493064 -48044195 + B3 SINE B2 7 216 0 1 1382 248 298 24 0 chr5 104493097 104493181 -48044078 + (CATA)n Simple_repeat Simple_repeat 3 88 0 1 1382 370 264 0 22 chr5 104493238 104493327 -48043932 - PB1D10 SINE Alu -6 111 25 1 1382 183 260 39 20 chr5 104493389 104493440 -48043819 + L2a LINE L2 3350 3401 -25 1 1382 955 78 22 10 chr5 104494474 104494618 -48042641 - RLTR10 LTR ERVK 0 411 259 1 1382 232 70 47 0 chr5 104494603 104494646 -48042613 - RLTR10 LTR ERVK -85 305 261 1 1382 2294 65 18 15 chr5 104494720 104495050 -48042209 - RLTR10 LTR ERVK -59 331 1 1 1382 9063 17 0 0 chr5 104495052 104496047 -48041212 - RLTR10-int LTR ERVK -3 1984 990 1 1382 379 259 54 16 chr5 104496129 104496278 -48040981 - RLTR10-int LTR ERVK -5987 1594 1462 1 1382 8165 30 1 27 chr5 104496323 104497307 -48039952 - RLTR10-int LTR ERVK -989 998 41 1 1382 2497 41 6 253 chr5 104497317 104497835 -48039424 - RLTR10 LTR ERVK 0 390 1 1 1382 581 170 28 233 chr5 104497903 104498118 -48039141 - B3 SINE B2 -44 172 2 1 1382 26 0 0 0 chr5 104499939 104499965 -48037294 + AT_rich Low_complexity Low_complexity 1 26 0 1 1382 378 0 0 0 chr5 104501340 104501382 -48035877 + (C)n Simple_repeat Simple_repeat 1 42 0 1 1382 226 250 0 30 chr5 104501679 104501745 -48035514 + GA-rich Low_complexity Low_complexity 1 64 0 2 1382 234 180 0 0 chr5 104502009 104502070 -48035189 + GA-rich Low_complexity Low_complexity 2 62 0 3 1382 420 221 37 37 chr5 104502072 104502180 -48035079 + B1_Mur1 SINE Alu 40 147 -2 4 1382 1152 66 0 24 chr5 104502688 104502858 -48034401 - L1Md_F2 LINE L1 0 6582 6417 5 1382 222 338 0 0 chr5 104504754 104504834 -48032425 + ID4 SINE ID 2 81 -2 6 1382 181 115 80 11 chr5 104507486 104507574 -48029685 + (TA)n Simple_repeat Simple_repeat 1 94 0 7 1382 228 111 0 0 chr5 104508602 104508638 -48028621 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 8 1382 272 268 14 0 chr5 104509385 104509456 -48027803 - ID4_ SINE ID -11 72 1 9 1382 1347 202 170 22 chr5 104510024 104510388 -48026871 + MTD LTR MaLR 2 419 0 1 1382 182 346 37 12 chr5 104510440 104510522 -48026737 - MIR SINE MIR -62 146 63 1 1382 415 31 78 0 chr5 104511329 104511393 -48025866 - L1_Mus3 LINE L1 -4 6634 6566 1 1382 1371 70 21 5 chr5 104511395 104511581 -48025678 - B2_Mm2 SINE B2 -4 191 3 1 1382 757 151 8 0 chr5 104512323 104512449 -48024810 - B1_Mur1 SINE Alu -2 147 21 1 1382 726 130 0 0 chr5 104512453 104512584 -48024675 + (CA)n Simple_repeat Simple_repeat 2 132 0 1 1382 557 285 38 24 chr5 104512593 104512805 -48024454 - B3 SINE B2 -1 215 1 1 1382 596 335 69 0 chr5 104512813 104513016 -48024243 - B4 SINE B4 -74 218 2 1 1382 675 295 86 56 chr5 104513607 104513876 -48023383 + B4 SINE B4 14 290 -2 1 1382 435 92 0 0 chr5 104513893 104513958 -48023301 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1382 183 42 0 0 chr5 104515010 104515034 -48022225 + (CAGC)n Simple_repeat Simple_repeat 2 25 0 2 1382 274 285 71 21 chr5 104515117 104515257 -48022002 + L2a LINE L2 3276 3422 -4 2 1382 299 232 0 28 chr5 104516266 104516337 -48020922 - MER5B DNA MER1_type -109 69 1 2 1382 1061 106 0 0 chr5 104516363 104516504 -48020755 + B1_Mus1 SINE Alu 1 141 -7 2 1382 252 0 0 0 chr5 104516506 104516534 -48020725 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2 1382 28 0 0 0 chr5 104517820 104517848 -48019411 + AT_rich Low_complexity Low_complexity 1 28 0 2 1382 513 302 64 17 chr5 104518197 104518433 -48018826 - B4A SINE B4 -45 247 1 2 1382 207 0 0 0 chr5 104520265 104520288 -48016971 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2 1382 653 153 12 111 chr5 104520288 104520443 -48016816 - B1_Mur4 SINE Alu -9 141 2 2 1382 1183 36 0 0 chr5 104520949 104521086 -48016173 + B1_Mm SINE Alu 1 137 -10 2 1382 306 106 0 0 chr5 104521955 104522002 -48015257 + (TTC)n Simple_repeat Simple_repeat 1 47 0 3 1382 1436 61 39 0 chr5 104522459 104522639 -48014620 + B2_Mm2 SINE B2 2 188 -7 3 1382 1163 61 0 13 chr5 104522895 104523044 -48014215 - B1_Mus1 SINE Alu -1 147 1 3 1382 1511 148 58 63 chr5 104523046 104523263 -48013996 + RMER17C LTR ERVK 1 221 -189 3 1382 567 43 0 0 chr5 104523263 104523333 -48013926 + (TC)n Simple_repeat Simple_repeat 2 71 0 3 1382 1511 148 58 63 chr5 104523333 104523513 -48013746 + RMER17C LTR ERVK 222 396 -14 3 1382 272 56 0 0 chr5 104523513 104523549 -48013710 - U2 snRNA snRNA -152 36 1 3 1382 463 189 0 16 chr5 104523981 104524105 -48013154 + (TA)n Simple_repeat Simple_repeat 1 122 0 3 1382 1451 60 22 0 chr5 104526141 104526324 -48010935 + B2_Mm2 SINE B2 2 188 -7 3 1382 25 31 0 0 chr5 104526419 104526451 -48010808 + AT_rich Low_complexity Low_complexity 1 32 0 3 1382 414 0 0 0 chr5 104526462 104526508 -48010751 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1382 219 150 0 0 chr5 104528220 104528260 -48008999 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 4 1382 1195 35 7 0 chr5 104528260 104528403 -48008856 - B1_Mus1 SINE Alu 0 148 5 4 1382 1569 21 0 77 chr5 104529122 104529330 -48007929 - B2_Mm1a SINE B2 0 193 2 4 1382 1243 88 0 3 chr5 104530210 104530505 -48006754 + MTB_Mm LTR MaLR 1 391 -5 4 1382 281 170 37 9 chr5 104530517 104530624 -48006635 + (TCTA)n Simple_repeat Simple_repeat 3 112 0 4 1382 244 122 0 0 chr5 104531180 104531221 -48006038 + (G)n Simple_repeat Simple_repeat 1 41 0 4 1382 227 293 77 39 chr5 104531725 104531803 -48005456 + LTR33 LTR ERVL 94 174 -341 4 1382 1447 149 58 111 chr5 104533255 104533686 -48003573 + RMER17C LTR ERVK 3 410 0 4 1382 228 67 0 0 chr5 104534040 104534070 -48003189 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1382 3059 78 18 0 chr5 104534151 104534551 -48002708 + MTB_Mm LTR MaLR 1 407 0 4 1382 321 26 0 0 chr5 104534613 104534651 -48002608 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1382 288 0 0 0 chr5 104535216 104535248 -48002011 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5 1382 1239 48 0 0 chr5 104535259 104535406 -48001853 + B1_Mm SINE Alu 1 147 0 5 1382 257 131 0 16 chr5 104535412 104535474 -48001785 + (CAAA)n Simple_repeat Simple_repeat 1 61 0 5 1382 559 247 82 6 chr5 104535485 104535668 -48001591 - B3A SINE B2 0 198 2 5 1382 225 255 130 56 chr5 104535753 104535861 -48001398 + LTR84a LTR ERVL 14 129 -628 5 1382 282 335 134 8 chr5 104537951 104538219 -47999040 + Kanga2_a DNA Tc2 3 304 -584 5 1382 22 35 0 0 chr5 104538949 104538978 -47998281 + AT_rich Low_complexity Low_complexity 1 29 0 5 1382 432 0 0 0 chr5 104540223 104540271 -47996988 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1382 207 0 0 0 chr5 104542021 104542044 -47995215 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1382 342 0 0 0 chr5 104543288 104543326 -47993933 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 6 1382 344 265 24 0 chr5 104543333 104543416 -47993843 - B1_Mur3 SINE Alu -64 85 1 6 1382 238 303 62 27 chr5 104543464 104543574 -47993685 - MIRb SINE MIR -15 253 140 6 1382 405 340 34 71 chr5 104543574 104543843 -47993416 + MIR SINE MIR 1 259 -3 6 1382 873 182 142 34 chr5 104545557 104545790 -47991469 + RMER13A LTR ERVK 212 469 -391 6 1382 781 294 75 14 chr5 104546057 104546350 -47990909 + MER2 DNA MER2_type 33 343 -2 6 1382 395 215 160 62 chr5 104546594 104546616 -47990643 - MLT1B LTR MaLR -3 387 371 6 1382 1454 122 67 193 chr5 104546616 104547082 -47990177 + RMER17C LTR ERVK 1 407 -3 6 1382 395 215 160 62 chr5 104547082 104547203 -47990056 - MLT1B LTR MaLR -20 370 230 6 1382 740 144 0 0 chr5 104547751 104547869 -47989390 + B3 SINE B2 1 118 -98 6 1382 25 31 0 0 chr5 104548117 104548149 -47989110 + AT_rich Low_complexity Low_complexity 1 32 0 6 1382 1605 43 0 5 chr5 104548150 104548338 -47988921 - B2_Mm2 SINE B2 -8 187 1 7 1382 368 325 26 0 chr5 104548671 104548788 -47988471 - MLT1B LTR MaLR -211 200 81 6 1382 436 325 73 29 chr5 104548871 104549213 -47988046 + ORR1E LTR MaLR 3 359 0 7 1382 230 200 0 0 chr5 104549360 104549410 -47987849 + ID4 SINE ID 2 51 -32 7 1382 311 221 128 84 chr5 104549520 104549723 -47987536 + L1M2 LINE L1 5254 5465 -826 7 1382 4619 130 6 13 chr5 104550226 104550936 -47986323 + L1_Mur1 LINE L1 4492 5196 -690 7 1382 273 57 0 0 chr5 104551132 104551167 -47986092 + (TA)n Simple_repeat Simple_repeat 2 36 0 7 1382 238 300 105 32 chr5 104551246 104551370 -47985889 + RSINE1 SINE B4 14 146 -19 7 1382 200 79 53 0 chr5 104551390 104551428 -47985831 + (TAAAA)n Simple_repeat Simple_repeat 4 43 0 7 1382 674 320 78 39 chr5 104551549 104551984 -47985275 - MLT1B LTR MaLR -6 461 10 7 1382 906 200 137 0 chr5 104552092 104552282 -47984977 - B3 SINE B2 0 216 1 7 1382 452 302 84 11 chr5 104552421 104552612 -47984647 - MLT1B-int LTR MaLR -214 1157 953 7 1382 690 246 207 7 chr5 104552667 104552937 -47984322 - MLT1B LTR MaLR -9 381 58 7 1382 1324 294 137 14 chr5 104553057 104553686 -47983573 - MLT1B-int LTR MaLR -510 861 156 7 1382 358 160 0 107 chr5 104553689 104553773 -47983486 + RMER10A LTR ERVL 1 75 -367 8 1382 225 239 0 0 chr5 104553994 104554040 -47983219 + CT-rich Low_complexity Low_complexity 2 47 0 8 1382 328 267 71 18 chr5 104554140 104554308 -47982951 + RMER10A LTR ERVL 122 298 -144 8 1382 527 143 11 11 chr5 104554350 104554442 -47982817 - B1_Mus1 SINE Alu -56 92 1 8 1382 375 200 0 13 chr5 104554374 104554450 -47982809 - B4A SINE B4 -140 152 78 8 1382 21 36 0 0 chr5 104554451 104554479 -47982780 + AT_rich Low_complexity Low_complexity 1 28 0 8 1382 5079 72 13 9 chr5 104554725 104555399 -47981860 - L1_Mus4 LINE L1 -1 6635 5959 8 1382 816 255 189 13 chr5 104555488 104555806 -47981453 - MTEb LTR MaLR -3 376 3 8 1382 340 348 0 7 chr5 104557346 104557485 -47979774 + MIR SINE MIR 45 182 -80 8 1382 531 151 0 0 chr5 104558648 104558741 -47978518 + (CA)n Simple_repeat Simple_repeat 2 94 0 8 1382 552 100 0 0 chr5 104559174 104559254 -47978005 + (GGGA)n Simple_repeat Simple_repeat 3 82 0 8 1382 243 223 101 50 chr5 104559254 104559353 -47977906 - MTEb LTR MaLR -53 326 223 9 1382 234 261 76 67 chr5 104559558 104559677 -47977582 + RCHARR1 DNA MER1_type 312 431 -543 9 1382 338 221 97 7 chr5 104559700 104559855 -47977404 + RCHARR1 DNA MER1_type 729 897 -77 9 1382 597 225 183 43 chr5 104559874 104560125 -47977134 - B4 SINE B4 0 292 7 9 1382 270 0 0 0 chr5 104561126 104561156 -47976103 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1382 432 0 0 0 chr5 104561156 104561203 -47976056 + (GA)n Simple_repeat Simple_repeat 1 48 0 9 1382 321 140 0 0 chr5 104561289 104561346 -47975913 + (CCA)n Simple_repeat Simple_repeat 3 59 0 9 1382 1170 51 0 0 chr5 104561500 104561638 -47975621 + B1_Mus1 SINE Alu 2 139 -9 9 1382 217 0 61 0 chr5 104561638 104561671 -47975588 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1382 507 263 15 8 chr5 104562570 104562704 -47974555 - ID_B1 SINE B4 -6 218 84 9 1382 242 252 125 66 chr5 104562607 104562743 -47974516 - MT2B LTR ERVL -344 257 114 9 1382 27 0 0 0 chr5 104563487 104563514 -47973745 + AT_rich Low_complexity Low_complexity 1 27 0 1 1382 8091 73 15 1 chr5 104563514 104564680 -47972579 - L1_Mus3 LINE L1 -8 6630 5450 1 1382 201 39 0 0 chr5 104564680 104564706 -47972553 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1382 987 60 0 0 chr5 104564707 104564841 -47972418 - B1_Mus1 SINE Alu -8 140 7 1 1382 380 184 8 114 chr5 104564734 104564857 -47972402 - MT2B LTR ERVL -337 264 155 1 1382 261 270 0 26 chr5 104564739 104564895 -47972364 - ORR1B1-int LTR MaLR -755 754 603 1 1382 7292 68 34 1 chr5 104564895 104566294 -47970965 - L1Md_F2 LINE L1 -47 6535 5080 1 1382 785 93 78 0 chr5 104566294 104566423 -47970836 - MTB LTR MaLR -261 139 1 1 1382 1268 98 55 18 chr5 104566423 104566641 -47970618 - MusHAL1 LINE L1 -440 2272 2047 1 1382 360 0 0 0 chr5 104566810 104566850 -47970409 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1382 578 284 78 16 chr5 104566875 104567133 -47970126 - B4A SINE B4 -18 274 1 1 1382 453 220 0 0 chr5 104568305 104568519 -47968740 + (CA)n Simple_repeat Simple_repeat 1 214 0 1 1382 637 197 0 9 chr5 104568532 104568870 -47968389 + (CA)n Simple_repeat Simple_repeat 1 334 0 1 1382 381 341 58 72 chr5 104568884 104569381 -47967878 + L2a LINE L2 2910 3399 -27 1 1382 218 307 153 45 chr5 104570136 104570293 -47966966 + MIR SINE MIR 41 214 -48 1 1382 295 173 11 100 chr5 104570578 104570668 -47966591 - L1MB2 LINE L1 0 6171 6090 1 1382 944 304 91 25 chr5 104570781 104571223 -47966036 - L1MB3 LINE L1 -263 5920 5450 1 1382 1074 96 7 0 chr5 104571957 104572103 -47965156 - B1_Mus1 SINE Alu 0 148 2 1 1382 973 264 55 7 chr5 104573096 104573371 -47963888 - B4 SINE B4 0 292 5 1 1382 209 241 38 12 chr5 104574283 104574363 -47962896 + (TTATA)n Simple_repeat Simple_repeat 5 86 0 1 1382 1602 53 0 0 chr5 104575463 104575653 -47961606 - B2_Mm1a SINE B2 -2 191 2 1 1382 9092 8 0 0 chr5 104576109 104577191 -47960068 - L1Md_A LINE L1 0 6582 5533 1 1382 391 221 212 27 chr5 104577288 104577461 -47959798 + L1MD LINE L1 5606 5805 -2190 1 1382 26 0 0 0 chr5 104577539 104577565 -47959694 + AT_rich Low_complexity Low_complexity 1 26 0 1 1382 979 91 29 0 chr5 104577590 104577765 -47959494 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1382 487 229 18 27 chr5 104577765 104577868 -47959391 - PB1D10 SINE Alu -14 103 1 1 1382 2408 156 88 66 chr5 104580241 104580798 -47956461 + RMER4B LTR ERVK 17 585 0 1 1382 961 221 15 5 chr5 104580952 104581157 -47956102 + B3 SINE B2 4 210 -6 1 1382 263 161 18 0 chr5 104581349 104581405 -47955854 + GA-rich Low_complexity Low_complexity 4 60 0 1 1382 23 33 0 0 chr5 104581586 104581616 -47955643 + AT_rich Low_complexity Low_complexity 1 30 0 1 1382 474 310 152 0 chr5 104581635 104581832 -47955427 + B4A SINE B4 1 227 -65 1 1382 684 93 0 0 chr5 104581832 104581929 -47955330 + (GGGAA)n Simple_repeat Simple_repeat 3 99 0 1 1382 2523 70 8 6 chr5 104583151 104583513 -47953746 - MTB LTR MaLR 0 400 38 1 1382 282 56 0 0 chr5 104583995 104584031 -47953228 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 1 1382 3125 209 38 36 chr5 104584439 104585125 -47952134 + Lx7 LINE L1 6737 7423 -273 1 1382 679 183 23 6 chr5 104585157 104585333 -47951926 + CT-rich Low_complexity Low_complexity 2 180 0 1 1382 293 118 20 0 chr5 104585506 104585557 -47951702 + GSAT_MM Satellite Satellite 39 90 -381 1 1382 945 138 12 42 chr5 104585599 104585766 -47951493 - Lx7 LINE L1 -3 7693 7532 1 1382 287 332 93 47 chr5 104585846 104586108 -47951151 - RMER13B LTR ERVK -45 863 556 1 1382 645 58 0 0 chr5 104586192 104586278 -47950981 + (GA)n Simple_repeat Simple_repeat 2 87 0 1 1382 404 228 15 54 chr5 104586342 104586472 -47950787 - RMER13A LTR ERVK -638 222 98 1 1382 3245 230 69 16 chr5 104586555 104587347 -47949912 - Lx7 LINE L1 -892 6804 5971 1 1382 398 210 12 12 chr5 104588309 104588566 -47948693 + (CA)n Simple_repeat Simple_repeat 1 257 0 1 1382 425 213 11 17 chr5 104588580 104588761 -47948498 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1382 388 262 0 0 chr5 104589128 104589208 -47948051 - PB1D10 SINE Alu -36 81 2 1 1382 342 272 67 9 chr5 104589309 104589434 -47947825 + B1F SINE Alu 12 142 -7 1 1382 353 356 145 26 chr5 104589609 104589920 -47947339 + MLT1J2 LTR MaLR 72 419 -29 1 1382 815 273 126 20 chr5 104590654 104591002 -47946257 + MER82 DNA MER2_type 8 392 -261 1 1382 414 0 0 0 chr5 104591999 104592045 -47945214 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1382 424 158 21 0 chr5 104592505 104592600 -47944659 + (TA)n Simple_repeat Simple_repeat 2 98 0 1 1382 2790 171 119 29 chr5 104593855 104594771 -47942488 + RLTR13D1 LTR ERVK 1 1022 -1 1 1382 482 276 6 0 chr5 104595078 104595241 -47942018 + (CA)n Simple_repeat Simple_repeat 1 164 0 1 172 237 284 157 0 chr5 104595399 104595501 -47941758 + MLT1E1A LTR MaLR 57 174 -506 1 1383 351 266 127 64 chr5 104595666 104595839 -47941420 - L1M5 LINE L1 -1541 4605 4422 1 1383 641 209 45 0 chr5 104595859 104595993 -47941266 + B1_Mur4 SINE Alu 1 140 -10 1 1383 183 42 0 0 chr5 104595993 104596017 -47941242 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1383 291 294 103 75 chr5 104596064 104596401 -47940858 - L1M5 LINE L1 -1779 4367 4023 1 1383 438 263 9 17 chr5 104596413 104596529 -47940730 - PB1D10 SINE Alu -2 115 1 1 1383 1484 159 41 39 chr5 104597265 104597614 -47939645 - ORR1C1 LTR MaLR 0 378 1 1 1383 831 48 0 0 chr5 104597643 104597747 -47939512 + (TTCTC)n Simple_repeat Simple_repeat 5 108 0 1 1383 1089 155 10 10 chr5 104597756 104597951 -47939308 - B2_Mm2 SINE B2 0 195 1 1 1383 312 315 24 36 chr5 104597954 104598122 -47939137 - L1M5 LINE L1 -3106 3040 2875 1 1383 606 216 0 31 chr5 104598199 104598328 -47938931 + B1_Mur4 SINE Alu 26 150 0 1 1383 238 294 0 0 chr5 104598614 104598682 -47938577 - MamRep1879 DNA hAT? -80 136 69 1 1383 343 338 108 9 chr5 104600895 104601107 -47936152 - Lx8 LINE L1 -156 7317 7085 1 1383 468 0 0 0 chr5 104601374 104601426 -47935833 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1383 287 331 44 7 chr5 104602464 104602601 -47934658 - MIRm SINE MIR -131 145 4 1 1383 1117 101 0 32 chr5 104605292 104605477 -47931782 - B2_Mm2 SINE B2 -11 184 6 1 1383 249 196 0 0 chr5 104606329 104606380 -47930879 + (ATGGTG)n Simple_repeat Simple_repeat 6 56 0 1 1383 717 279 0 0 chr5 104606476 104606935 -47930324 + (CAG)n Simple_repeat Simple_repeat 1 459 0 1 1383 348 303 0 0 chr5 104606950 104607082 -47930177 + (CAG)n Simple_repeat Simple_repeat 1 132 0 1 1383 492 296 0 0 chr5 104607095 104607271 -47929988 + (CAG)n Simple_repeat Simple_repeat 2 177 0 1 1383 522 364 0 0 chr5 104607292 104607608 -47929651 + (CAG)n Simple_repeat Simple_repeat 1 316 0 1 1383 844 137 186 11 chr5 104609607 104609784 -47927475 - ORR1C2 LTR MaLR 0 384 177 1 1383 637 263 83 65 chr5 104609790 104610204 -47927055 + RLTR11A2 LTR ERVK 1 423 -18 1 1383 235 100 80 0 chr5 104610276 104610326 -47926933 + (GGGTG)n Simple_repeat Simple_repeat 3 56 0 1 1383 1262 293 31 80 chr5 104611091 104611707 -47925552 + MYSERV6-int LTR ERVK 4538 5123 -1427 1 1383 407 261 46 52 chr5 104611711 104611885 -47925374 + RMER4A LTR ERVK 251 423 -43 1 1383 1826 179 122 33 chr5 104611886 104612421 -47924838 + MYSERV6-int LTR ERVK 7808 8324 -635 1 1383 1853 211 45 11 chr5 104612769 104613214 -47924045 + MYSERV6-int LTR ERVK 8328 8787 -172 1 1383 880 214 56 19 chr5 104613305 104613519 -47923740 + MYSERV-int LTR ERVK 6329 6550 0 1 1383 900 273 24 45 chr5 104613519 104613944 -47923315 + BGLII_B LTR ERVK 1 416 -25 1 1383 700 86 94 0 chr5 104613987 104614104 -47923155 - ORR1C1 LTR MaLR -250 128 1 1 1383 677 267 27 0 chr5 104614465 104614615 -47922644 - B3A SINE B2 -44 154 1 1 1383 2271 82 27 59 chr5 104614763 104615101 -47922158 - ORR1A2 LTR MaLR 0 327 1 1 1383 433 275 67 57 chr5 104615316 104615402 -47921857 + ID_B1 SINE B4 6 93 -131 1 1383 213 330 121 48 chr5 104615402 104615526 -47921733 + B1F SINE Alu 1 133 -16 1 1383 311 236 0 46 chr5 104615528 104615750 -47921509 + GA-rich Low_complexity Low_complexity 1 211 0 1 1383 188 164 33 0 chr5 104615752 104615813 -47921446 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 1 1383 322 177 65 0 chr5 104616526 104616588 -47920671 + MLT1A0 LTR MaLR 300 365 0 1 1383 1200 68 0 0 chr5 104616973 104617121 -47920138 + B1_Mus1 SINE Alu 1 148 0 1 1383 651 88 0 0 chr5 104617123 104617214 -47920045 + (GA)n Simple_repeat Simple_repeat 2 92 0 1 1383 2818 22 22 0 chr5 104617331 104617651 -47919608 - IAPLTR2b LTR ERVK 0 327 1 1 1383 14130 73 12 6 chr5 104617653 104619465 -47917794 - IAPEz-int LTR ERVK -2 6479 4656 1 1383 1904 83 0 0 chr5 104619464 104619704 -47917555 - IAPEY3-int LTR ERVK -5183 2497 2258 1 1383 391 88 0 0 chr5 104619709 104619766 -47917493 - B1_Mus1 SINE Alu -91 57 1 1 1383 4927 104 69 65 chr5 104619766 104621071 -47916188 - IAPEz-int LTR ERVK -5486 995 3 1 1383 2827 22 22 0 chr5 104621073 104621392 -47915867 - IAPLTR2b LTR ERVK -1 326 1 1 1383 551 134 34 0 chr5 104621777 104621896 -47915363 + (TG)n Simple_repeat Simple_repeat 2 124 0 1 1383 189 0 0 0 chr5 104623704 104623725 -47913534 + (CTG)n Simple_repeat Simple_repeat 2 22 0 1 1383 2588 227 58 5 chr5 104624164 104624766 -47912493 + Lx7 LINE L1 6730 7363 -333 1 1383 346 151 47 0 chr5 104624771 104624877 -47912382 + (TA)n Simple_repeat Simple_repeat 1 111 0 1 1383 308 143 48 0 chr5 104624916 104625000 -47912259 + (TA)n Simple_repeat Simple_repeat 2 89 0 1 1383 1529 181 28 53 chr5 104625001 104625357 -47911902 + Lx7 LINE L1 7350 7696 0 1 1383 319 247 32 16 chr5 104625396 104625508 -47911751 + PB1D7 SINE Alu 7 120 0 1 1383 264 323 70 19 chr5 104625883 104626041 -47911218 + B4 SINE B4 2 167 -125 1 1383 282 56 0 0 chr5 104626056 104626092 -47911167 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1383 398 304 6 57 chr5 104626096 104626219 -47911040 - RSINE1 SINE B4 -15 150 34 1 1383 5026 141 50 42 chr5 104626219 104627114 -47910145 + RMER19B LTR ERVK 1 902 0 1 1383 398 304 6 57 chr5 104627114 104627147 -47910112 - RSINE1 SINE B4 -132 33 2 1 1383 245 246 16 0 chr5 104627147 104627204 -47910055 + MTEa LTR MaLR 322 379 0 1 1383 204 300 0 0 chr5 104627229 104627279 -47909980 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1383 195 42 0 0 chr5 104627539 104627563 -47909696 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1383 243 0 0 0 chr5 104627648 104627675 -47909584 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 1 1383 551 129 23 31 chr5 104627749 104627803 -47909456 + polypyrimidine Low_complexity Low_complexity 79 130 0 1 1383 1156 107 90 0 chr5 104627803 104627981 -47909278 - B2_Mm2 SINE B2 -1 194 1 1 1383 551 129 23 31 chr5 104627981 104628054 -47909205 + polypyrimidine Low_complexity Low_complexity 4 78 0 2 1383 266 258 0 0 chr5 104628095 104628157 -47909102 - B4A SINE B4 -225 67 6 2 1383 620 336 36 5 chr5 104628163 104628384 -47908875 - B4A SINE B4 -63 229 2 2 1383 1173 88 6 6 chr5 104628408 104628580 -47908679 - L1_Mus2 LINE L1 0 6566 6395 2 1383 44 20 0 0 chr5 104628580 104628631 -47908628 + AT_rich Low_complexity Low_complexity 1 51 0 2 1383 2899 152 37 14 chr5 104628862 104629377 -47907882 + RLTR11A2 LTR ERVK 1 527 0 2 1383 211 303 29 129 chr5 104630587 104630727 -47906532 - L2b LINE L2 0 3426 3299 2 1383 539 153 44 13 chr5 104632329 104632488 -47904771 + (CATA)n Simple_repeat Simple_repeat 4 167 0 2 1383 494 224 19 37 chr5 104632498 104632660 -47904599 + (CA)n Simple_repeat Simple_repeat 2 160 0 2 1383 216 243 12 75 chr5 104633289 104633369 -47903890 + L2a LINE L2 3352 3426 0 2 1383 549 0 0 0 chr5 104633489 104633550 -47903709 + (TA)n Simple_repeat Simple_repeat 1 61 0 2 1383 234 128 0 0 chr5 104635361 104635400 -47901859 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1383 800 310 37 29 chr5 104635567 104635949 -47901310 - L1MB8 LINE L1 0 6178 5794 2 1383 292 353 29 0 chr5 104636361 104636497 -47900762 + MER5A DNA MER1_type 18 157 -32 2 1383 978 101 65 0 chr5 104637063 104637202 -47900057 - B1_Mus1 SINE Alu 0 148 1 2 1383 270 331 75 23 chr5 104637254 104637427 -47899832 - MIR SINE MIR -34 228 47 2 1383 426 108 0 0 chr5 104638629 104638694 -47898565 + (TCTG)n Simple_repeat Simple_repeat 2 66 0 2 1383 417 20 0 0 chr5 104639442 104639492 -47897767 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1383 539 117 4 58 chr5 104639610 104639836 -47897423 + (TG)n Simple_repeat Simple_repeat 1 213 0 2 1383 253 338 0 0 chr5 104639839 104639907 -47897352 - ID2 SINE ID -10 73 6 2 1383 478 200 227 0 chr5 104640267 104640377 -47896882 + B1F SINE Alu 1 135 -14 2 1383 824 77 0 8 chr5 104640377 104640495 -47896764 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 2 1383 187 54 54 0 chr5 104642110 104642147 -47895112 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 1383 244 222 0 0 chr5 104642991 104643054 -47894205 + T-rich Low_complexity Low_complexity 1 63 0 2 1383 580 274 48 5 chr5 104643316 104643503 -47893756 + B3A SINE B2 2 196 -2 2 1383 357 12 5 190 chr5 104643792 104644003 -47893256 + (CCTA)n Simple_repeat Simple_repeat 1 172 0 2 1383 387 0 0 0 chr5 104644092 104644135 -47893124 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1383 1769 199 76 7 chr5 104644603 104645013 -47892246 + BGLII_B LTR ERVK 4 441 0 2 1383 333 0 0 0 chr5 104645321 104645358 -47891901 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1383 324 0 0 0 chr5 104647051 104647087 -47890172 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1383 315 191 0 0 chr5 104647809 104647877 -47889382 + CT-rich Low_complexity Low_complexity 3 70 0 2 1383 317 327 39 0 chr5 104647878 104647982 -47889277 - ID_B1 SINE B4 -31 193 86 2 1383 480 195 133 0 chr5 104648236 104648349 -47888910 - Lx7 LINE L1 -596 7100 6973 2 1383 21 36 0 0 chr5 104648362 104648390 -47888869 + AT_rich Low_complexity Low_complexity 1 28 0 2 1383 274 224 105 0 chr5 104648586 104648662 -47888597 + MER34 LTR ERV1 97 180 -362 2 1383 324 278 439 0 chr5 104648703 104648908 -47888351 + MER34 LTR ERV1 248 542 0 2 1383 1233 34 0 0 chr5 104649016 104649162 -47888097 + B1_Mus2 SINE Alu 2 147 0 2 1383 237 282 6 50 chr5 104649899 104650078 -47887181 + (ATGTG)n Simple_repeat Simple_repeat 3 173 0 2 1383 3102 69 13 0 chr5 104650117 104650510 -47886749 + MTB LTR MaLR 3 400 0 2 1383 415 290 8 15 chr5 104650921 104651054 -47886205 - Lx9 LINE L1 -206 7438 7307 2 1383 252 86 0 0 chr5 104651154 104651189 -47886070 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1383 540 316 7 0 chr5 104651543 104651698 -47885561 - B3 SINE B2 -46 170 15 2 1383 623 237 60 25 chr5 104652399 104652598 -47884661 + RMER5 LTR ERV1 217 422 -112 2 1383 514 294 36 45 chr5 104653287 104653511 -47883748 - RMER12 LTR ERVK 0 1322 1101 2 1383 4323 117 62 14 chr5 104653685 104654425 -47882834 - RLTR22_Mur LTR ERVK -1072 776 1 2 1383 225 269 99 8 chr5 104655306 104655437 -47881822 - L1M3 LINE L1 -1610 4530 4388 2 1383 1287 299 93 8 chr5 104655720 104656226 -47881033 - Lx8 LINE L1 -574 6899 6351 2 1383 239 282 145 50 chr5 104656514 104656693 -47880566 - L1MEg LINE L1 -3487 2659 2464 2 1383 198 167 0 0 chr5 104656790 104656826 -47880433 + CT-rich Low_complexity Low_complexity 1 36 0 2 1383 1173 60 12 12 chr5 104656851 104657019 -47880240 - B2_Mm2 SINE B2 -14 181 14 2 1383 639 26 0 0 chr5 104657494 104657571 -47879688 + (CA)n Simple_repeat Simple_repeat 2 78 0 2 1383 376 263 21 0 chr5 104657722 104657817 -47879442 - Lx8 LINE L1 -146 7327 7231 2 1383 270 290 0 0 chr5 104658031 104658093 -47879166 + PB1 SINE Alu 2 63 -64 2 1383 297 321 56 20 chr5 104658241 104658438 -47878821 - L1MEg LINE L1 -4743 1499 1296 2 1383 726 131 0 0 chr5 104658799 104658921 -47878338 + (TC)n Simple_repeat Simple_repeat 1 122 0 2 1383 720 227 40 11 chr5 104659370 104659544 -47877715 + B3A SINE B2 2 180 -18 2 1383 262 358 29 14 chr5 104659891 104660030 -47877229 - L1MC1 LINE L1 -22 6311 6171 2 1383 235 300 14 7 chr5 104660541 104660621 -47876638 + CT-rich Low_complexity Low_complexity 1 80 0 2 1383 360 292 65 19 chr5 104660621 104660729 -47876530 - PB1D7 SINE Alu -7 113 1 2 1383 1509 221 49 61 chr5 104661072 104661578 -47875681 - RMER4B LTR ERVK -6 579 16 2 1383 289 352 43 7 chr5 104661866 104662006 -47875253 - MamGypLTR1c LTR Gypsy -56 747 603 2 1383 1493 223 82 71 chr5 104663180 104663250 -47874009 + L1_Rod LINE L1 5144 5212 -635 2 1383 207 0 0 0 chr5 104663250 104663273 -47873986 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1383 1493 223 82 71 chr5 104663273 104663776 -47873483 + L1_Rod LINE L1 5213 5723 -124 2 1383 459 0 0 0 chr5 104664003 104664054 -47873205 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2 1383 1026 226 0 10 chr5 104664068 104664265 -47872994 - B3 SINE B2 -20 196 2 2 1383 396 0 0 0 chr5 104665144 104665188 -47872071 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1383 231 114 0 0 chr5 104666587 104666622 -47870637 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2 1383 208 250 0 0 chr5 104667430 104667474 -47869785 + T-rich Low_complexity Low_complexity 2 45 0 2 1383 1790 143 46 67 chr5 104667602 104667947 -47869312 - ORR1C1 LTR MaLR 0 378 41 2 1383 869 319 47 49 chr5 104667949 104668068 -47869191 + Lx8 LINE L1 6940 7060 -413 2 1383 876 61 0 0 chr5 104668068 104668183 -47869076 + (CA)n Simple_repeat Simple_repeat 1 115 0 2 1383 869 319 47 49 chr5 104668183 104668571 -47868688 + Lx8 LINE L1 7061 7446 -27 2 1383 1872 197 139 68 chr5 104670261 104670806 -47866453 + RLTR31A_Mm LTR ERVK 1 584 0 2 1383 776 246 35 45 chr5 104670940 104670995 -47866264 - B3A SINE B2 0 198 149 2 1383 351 0 0 0 chr5 104670995 104671034 -47866225 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1383 776 246 35 45 chr5 104671034 104671178 -47866081 - B3A SINE B2 -50 148 1 2 1383 366 325 148 47 chr5 104671203 104671562 -47865697 - LTR16C LTR ERVL -17 472 78 2 1383 353 291 50 28 chr5 104671655 104671835 -47865424 + L1MC4 LINE L1 7238 7421 -621 2 1383 240 306 28 0 chr5 104671892 104671964 -47865295 + ID4 SINE ID 8 81 -2 2 1383 630 271 42 12 chr5 104672092 104672286 -47864973 + B3A SINE B2 2 199 -17 2 1383 324 365 98 86 chr5 104672622 104672921 -47864338 - MER21B LTR ERV1 -58 805 503 2 1383 281 140 123 0 chr5 104672921 104672948 -47864311 - ORR1D2 LTR MaLR 0 374 348 2 1383 180 0 0 0 chr5 104672948 104672968 -47864291 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2 1383 281 140 123 0 chr5 104672968 104672997 -47864262 - ORR1D2 LTR MaLR -27 347 312 2 1383 3462 197 29 21 chr5 104673023 104673775 -47863484 + RLTR22_Mur LTR ERVK 1 758 -1090 2 1383 280 147 12 128 chr5 104673816 104673902 -47863357 + RLTR22_Mur LTR ERVK 932 1007 -841 2 1383 357 168 165 19 chr5 104674158 104674261 -47862998 + RLTR22_Mur LTR ERVK 1731 1848 0 2 1383 831 266 72 17 chr5 104674261 104674486 -47862773 - ORR1D2 LTR MaLR -132 238 1 2 1383 399 129 53 14 chr5 104674601 104674693 -47862566 - MTEb LTR MaLR -13 366 275 2 1383 27 0 0 0 chr5 104674693 104674720 -47862539 + AT_rich Low_complexity Low_complexity 1 27 0 2 1383 21 0 0 0 chr5 104674781 104674802 -47862457 + AT_rich Low_complexity Low_complexity 1 21 0 2 1383 1370 155 0 14 chr5 104674814 104675037 -47862222 - Lx3B LINE L1 -3 6970 6751 2 1383 3713 114 6 0 chr5 104675037 104675555 -47861704 + Lx3B LINE L1 6226 6746 -227 2 1383 490 264 124 0 chr5 104675607 104675736 -47861523 - RSINE1 SINE B4 -18 147 3 2 1383 399 255 51 0 chr5 104675737 104675835 -47861424 - MTE2b LTR MaLR -80 299 197 2 1383 489 34 0 0 chr5 104675969 104676028 -47861231 + (CAT)n Simple_repeat Simple_repeat 2 60 0 2 1383 231 266 25 0 chr5 104676098 104676177 -47861082 + L1MC4 LINE L1 7564 7644 -398 2 1383 376 123 27 0 chr5 104678231 104678304 -47858955 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 1383 267 114 0 0 chr5 104678814 104678858 -47858401 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 2 1383 878 278 140 24 chr5 104678896 104679309 -47857950 + MLT1C LTR MaLR 4 464 -3 2 1383 1271 53 18 0 chr5 104680529 104680699 -47856560 + (GGGAGA)n Simple_repeat Simple_repeat 3 175 0 2 1383 264 309 94 89 chr5 104681141 104681354 -47855905 - MamGypLTR1c LTR Gypsy -79 724 511 2 1383 1540 246 61 2 chr5 104681932 104682343 -47854916 - RCHARR1 DNA MER1_type -15 959 525 2 1383 524 230 88 0 chr5 104682349 104682462 -47854797 - B1_Mur3 SINE Alu -21 128 6 2 1383 896 306 146 5 chr5 104682467 104682907 -47854352 - RCHARR1 DNA MER1_type -438 536 35 2 1383 1400 84 45 0 chr5 104682985 104683164 -47854095 - B2_Mm2 SINE B2 -8 187 1 2 1383 1133 55 13 27 chr5 104684787 104684936 -47852323 - B1_Mus2 SINE Alu 0 147 1 2 1383 3449 61 0 0 chr5 104687668 104688064 -47849195 + MTA_Mm LTR MaLR 1 396 0 2 1383 8037 73 16 70 chr5 104688064 104688480 -47848779 + MTA_Mm-int LTR MaLR 1 417 -681 2 1383 279 0 0 0 chr5 104688480 104688511 -47848748 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2 1383 8037 73 16 70 chr5 104688511 104689254 -47848005 + MTA_Mm-int LTR MaLR 418 1097 -1 2 1383 3501 51 2 0 chr5 104689254 104689649 -47847610 + MTA_Mm LTR MaLR 1 396 0 2 1383 3105 96 30 0 chr5 104689720 104690115 -47847144 + MTB_Mm LTR MaLR 1 407 0 2 1383 225 94 0 0 chr5 104690998 104691030 -47846229 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1383 349 359 50 25 chr5 104691106 104691306 -47845953 + LFSINE_Vert SINE SINE 193 397 -62 3 1383 262 431 15 0 chr5 104691651 104691781 -47845478 + MER45A DNA Tip100 43 174 -4 3 1383 28 0 0 0 chr5 104693187 104693215 -47844044 + AT_rich Low_complexity Low_complexity 1 28 0 3 1383 747 326 27 0 chr5 104693216 104693403 -47843856 - ID_B1 SINE B4 -29 195 4 3 1383 624 313 62 39 chr5 104693648 104693957 -47843302 + Lx8 LINE L1 7157 7472 -1 3 1383 2483 192 54 89 chr5 104694453 104695157 -47842102 - Lx9 LINE L1 -13 7631 6953 3 1383 5227 160 55 17 chr5 104695158 104696133 -47841126 + MTC-int LTR MaLR 230 1241 -17 3 1383 2499 172 12 37 chr5 104696134 104696562 -47840697 + MTC LTR MaLR 5 421 0 3 1383 784 229 82 6 chr5 104696577 104696735 -47840524 - B3A SINE B2 -28 170 1 3 1383 755 236 53 53 chr5 104697046 104697234 -47840025 + B3A SINE B2 4 191 -7 3 1383 4830 107 29 4 chr5 104697552 104698236 -47839023 + Lx2 LINE L1 6296 6996 -1 3 1383 420 310 2 17 chr5 104698502 104698624 -47838635 - B3A SINE B2 -1 197 77 3 1383 333 0 0 0 chr5 104698635 104698672 -47838587 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1383 351 113 0 0 chr5 104698672 104698725 -47838534 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 1383 381 308 74 15 chr5 104699140 104699275 -47837984 - B1F SINE Alu -5 144 2 3 1383 389 234 54 36 chr5 104699716 104699827 -47837432 + PB1D10 SINE Alu 5 117 0 3 1383 243 0 0 0 chr5 104700737 104700764 -47836495 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1383 486 0 0 0 chr5 104700764 104700818 -47836441 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1383 351 105 0 0 chr5 104701565 104701622 -47835637 + (CAGCC)n Simple_repeat Simple_repeat 2 58 0 3 1383 303 121 0 0 chr5 104701624 104701682 -47835577 + (TATG)n Simple_repeat Simple_repeat 4 61 0 3 1383 1288 62 0 14 chr5 104701691 104701968 -47835291 + (TTTC)n Simple_repeat Simple_repeat 1 273 0 3 1383 287 336 29 9 chr5 104701972 104702077 -47835182 - MIRb SINE MIR -58 210 104 3 1383 22 99 0 0 chr5 104702155 104702226 -47835033 + AT_rich Low_complexity Low_complexity 1 71 0 3 1383 429 337 67 55 chr5 104702337 104702770 -47834489 - L1MEg LINE L1 -4329 1755 1318 3 1383 549 313 54 31 chr5 104702844 104703068 -47834191 + RMER15 LTR ERVL 347 575 0 3 1383 922 223 29 0 chr5 104703068 104703274 -47833985 - RCHARR1 DNA MER1_type -286 688 477 3 1383 253 208 26 0 chr5 104703529 104703606 -47833653 + (CATA)n Simple_repeat Simple_repeat 1 79 0 3 1383 1042 262 52 3 chr5 104703753 104704044 -47833215 - RCHARR1 DNA MER1_type -603 371 67 3 1383 608 260 185 16 chr5 104704076 104704330 -47832929 - L1MA6 LINE L1 -201 6099 5803 3 1383 181 200 47 62 chr5 104704914 104704978 -47832281 + L2 LINE L2 550 612 -2807 3 1383 1676 218 93 8 chr5 104705184 104705540 -47831719 + MTD LTR MaLR 13 398 -21 3 1383 402 21 0 0 chr5 104705540 104705587 -47831672 + (TTA)n Simple_repeat Simple_repeat 1 47 0 3 1383 2059 232 63 10 chr5 104706684 104707497 -47829762 + L1_Rod LINE L1 920 1784 -4063 3 1383 543 132 0 0 chr5 104707511 104707594 -47829665 - L1_Rod LINE L1 -6508 664 582 3 1383 559 237 17 0 chr5 104707601 104707719 -47829540 + L1_Rod LINE L1 1748 1867 -3980 3 1383 36218 65 3 3 chr5 104707764 104713968 -47823291 - L1Md_F2 LINE L1 -1 6584 285 3 1383 724 278 180 30 chr5 104717630 104718068 -47819191 + L1_Rod LINE L1 5257 5760 -87 3 1383 985 288 95 40 chr5 104718091 104718143 -47819116 - MTD LTR MaLR -14 405 360 3 1383 1252 36 0 0 chr5 104718143 104718282 -47818977 + B1_Mm SINE Alu 2 140 -7 3 1383 985 288 95 40 chr5 104718282 104718609 -47818650 - MTD LTR MaLR -60 359 5 3 1383 879 231 97 73 chr5 104718980 104719269 -47817990 + MT2B2 LTR ERVL 4 299 -285 3 1383 996 130 15 111 chr5 104719135 104719334 -47817925 - ORR1A4 LTR MaLR -149 180 1 3 1383 5941 129 4 148 chr5 104719334 104720636 -47816623 - ORR1A4-int LTR MaLR 0 1963 849 3 1383 466 371 106 0 chr5 104720726 104720982 -47816277 - MER44B DNA MER2_type -254 296 14 3 1383 252 333 54 54 chr5 104721061 104721210 -47816049 + MER106B DNA MER1_type 3 151 -908 3 1383 256 266 176 50 chr5 104721329 104721541 -47815718 - L2c LINE L2 -30 3345 3117 3 1383 180 77 0 0 chr5 104722117 104722143 -47815116 + (C)n Simple_repeat Simple_repeat 1 26 0 3 1383 1349 228 88 15 chr5 104722467 104722809 -47814450 - ORR1D2 LTR MaLR -3 367 1 3 1383 209 163 82 0 chr5 104722879 104722928 -47814331 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 3 1383 447 203 187 0 chr5 104723577 104723700 -47813559 + Lx7 LINE L1 7118 7263 -433 3 1383 976 151 5 244 chr5 104723706 104723882 -47813377 + Lx7 LINE L1 7397 7535 -161 3 1383 255 61 0 0 chr5 104723882 104723915 -47813344 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 3 1383 976 151 5 244 chr5 104723915 104724132 -47813127 + Lx7 LINE L1 7536 7696 0 3 1383 762 109 0 0 chr5 104724146 104724283 -47812976 + (TC)n Simple_repeat Simple_repeat 2 138 0 3 1383 321 299 164 46 chr5 104724283 104724521 -47812738 - B4 SINE B4 -1 291 26 3 1383 24 0 0 0 chr5 104724556 104724580 -47812679 + AT_rich Low_complexity Low_complexity 1 24 0 3 1383 189 154 0 0 chr5 104724595 104724634 -47812625 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 3 1383 665 260 46 0 chr5 104724639 104724812 -47812447 - B3A SINE B2 -16 182 2 3 1383 414 265 55 30 chr5 104724815 104725017 -47812242 - L1MC5 LINE L1 -444 7517 7311 3 1383 968 296 141 53 chr5 104725463 104725995 -47811264 - Lx7 LINE L1 -2 7471 6883 3 1383 514 269 50 16 chr5 104726386 104726507 -47810752 - ETnERV2-int LTR ERVK -204 7202 7078 3 172 438 227 192 55 chr5 104726507 104726689 -47810570 - Lx7 LINE L1 -799 6897 6691 3 1384 1946 132 22 3 chr5 104727145 104727457 -47809802 + Lx LINE L1 6332 6649 -5 3 1384 765 178 6 22 chr5 104729231 104729409 -47807850 + CT-rich Low_complexity Low_complexity 3 177 0 3 1384 213 175 50 0 chr5 104729409 104729449 -47807810 + polypyrimidine Low_complexity Low_complexity 1 42 0 3 1384 406 283 9 0 chr5 104729465 104729571 -47807688 - ID_B1 SINE B4 -1 223 117 3 1384 351 209 0 0 chr5 104729658 104729768 -47807491 + CT-rich Low_complexity Low_complexity 2 111 0 3 1384 291 178 0 43 chr5 104730451 104730545 -47806714 + CT-rich Low_complexity Low_complexity 4 93 0 3 1384 386 121 15 0 chr5 104733339 104733405 -47803854 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 3 1384 35 24 0 0 chr5 104734405 104734447 -47802812 + AT_rich Low_complexity Low_complexity 1 42 0 3 1384 251 296 14 0 chr5 104737073 104737144 -47800115 - L1M5 LINE L1 -539 5634 5563 3 1384 249 247 0 110 chr5 104738549 104738649 -47798610 - RMER12 LTR ERVK -501 821 733 3 1384 270 164 0 0 chr5 104739085 104739140 -47798119 + GA-rich Low_complexity Low_complexity 1 55 0 3 1384 485 250 23 138 chr5 104740312 104740530 -47796729 + MER53 DNA hAT 1 193 0 3 1384 424 213 6 27 chr5 104740576 104740919 -47796340 + (CA)n Simple_repeat Simple_repeat 1 335 0 3 1384 1125 199 31 16 chr5 104742710 104743032 -47794227 - RMER17C LTR ERVK 0 410 84 3 1384 647 252 59 25 chr5 104743048 104743284 -47793975 - RMER17C LTR ERVK -166 244 1 3 1384 33548 73 1 2 chr5 104744425 104749663 -47787596 + L1Md_F2 LINE L1 353 5584 -299 3 1384 7835 62 9 10 chr5 104749665 104750662 -47786597 + L1Md_F2 LINE L1 5587 6582 0 3 1384 21 0 0 0 chr5 104751192 104751213 -47786046 + AT_rich Low_complexity Low_complexity 1 21 0 3 1384 455 304 67 109 chr5 104753266 104753687 -47783572 - MLT1A1 LTR MaLR -2 406 4 3 1384 194 194 0 0 chr5 104753846 104753882 -47783377 + L2b LINE L2 3238 3273 -102 3 1384 401 344 68 0 chr5 104755300 104755521 -47781738 + MIR SINE MIR 17 252 -10 3 1384 205 162 0 0 chr5 104756924 104756961 -47780298 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1384 430 277 11 58 chr5 104756966 104757017 -47780242 + C-rich Low_complexity Low_complexity 130 179 0 3 1384 327 49 0 0 chr5 104757017 104757058 -47780201 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1384 430 277 11 58 chr5 104757058 104757114 -47780145 + C-rich Low_complexity Low_complexity 78 129 0 3 1384 330 45 0 0 chr5 104757114 104757158 -47780101 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1384 430 277 11 58 chr5 104757158 104757189 -47780070 + C-rich Low_complexity Low_complexity 47 77 0 3 1384 204 40 0 0 chr5 104757189 104757214 -47780045 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1384 278 295 0 49 chr5 104757214 104757276 -47779983 + (CCCCAA)n Simple_repeat Simple_repeat 4 62 0 3 1384 434 100 20 20 chr5 104757276 104757378 -47779881 + (CA)n Simple_repeat Simple_repeat 2 103 0 3 1384 278 295 0 49 chr5 104757378 104757439 -47779820 + (CCCCAA)n Simple_repeat Simple_repeat 3 61 0 3 1384 327 25 0 0 chr5 104757439 104757479 -47779780 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1384 278 295 0 49 chr5 104757479 104757495 -47779764 + (CCCCAA)n Simple_repeat Simple_repeat 2 17 0 3 1384 241 326 12 0 chr5 104758610 104758696 -47778563 + MIRc SINE MIR 166 252 -16 3 1384 1381 141 14 5 chr5 104758907 104759128 -47778131 - URR1B DNA MER1_type -2 223 1 3 1384 1423 37 19 5 chr5 104759670 104761362 -47775897 + (CACAG)n Simple_repeat Simple_repeat 1 1714 0 3 1384 338 295 92 8 chr5 104764557 104764687 -47772572 + RSINE1 SINE B4 6 146 -19 3 1384 220 331 47 59 chr5 104765000 104765170 -47772089 - MIRb SINE MIR -9 259 92 3 1384 413 244 11 0 chr5 104765316 104765406 -47771853 + B3 SINE B2 1 91 -125 3 1384 37 23 0 0 chr5 104765806 104765850 -47771409 + AT_rich Low_complexity Low_complexity 1 44 0 3 1384 21 0 0 0 chr5 104768555 104768576 -47768683 + AT_rich Low_complexity Low_complexity 1 21 0 3 1384 265 226 0 0 chr5 104769397 104769450 -47767809 + B4A SINE B4 9 61 -231 3 1384 484 288 35 41 chr5 104769508 104769653 -47767606 + B4A SINE B4 149 292 0 3 1384 387 0 0 0 chr5 104769735 104769778 -47767481 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1384 1221 28 0 0 chr5 104769778 104769923 -47767336 + (GGGAGA)n Simple_repeat Simple_repeat 3 147 0 3 1384 214 217 31 42 chr5 104771511 104771607 -47765652 + (TAAA)n Simple_repeat Simple_repeat 2 96 0 3 1384 207 0 0 0 chr5 104771978 104772001 -47765258 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 3 1384 863 256 89 47 chr5 104772289 104772695 -47764564 - Lx9 LINE L1 -284 7360 6938 4 1384 21 0 0 0 chr5 104772733 104772754 -47764505 + AT_rich Low_complexity Low_complexity 1 21 0 4 1384 273 119 0 0 chr5 104772778 104772820 -47764439 + (GA)n Simple_repeat Simple_repeat 2 43 0 4 1384 42 57 0 0 chr5 104773353 104773423 -47763836 + AT_rich Low_complexity Low_complexity 1 70 0 4 1384 198 0 0 0 chr5 104773424 104773446 -47763813 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1384 243 0 0 0 chr5 104773454 104773481 -47763778 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1384 671 230 99 0 chr5 104773499 104773660 -47763599 - B3 SINE B2 -38 178 2 4 1384 199 265 162 10 chr5 104773858 104773957 -47763302 - L3 LINE CR1 -498 3991 3878 4 1384 261 174 135 34 chr5 104774037 104774126 -47763133 - B3A SINE B2 -97 98 1 4 1384 260 354 83 29 chr5 104774764 104774968 -47762291 - L3 LINE CR1 -820 3669 3455 4 1384 954 284 219 85 chr5 104775138 104776000 -47761259 + L1MDa LINE L1 19 1030 -5603 4 1384 603 356 21 14 chr5 104776000 104776285 -47760974 + B4A SINE B4 5 291 -1 4 1384 954 284 219 85 chr5 104776285 104776860 -47760399 + L1MDa LINE L1 1031 1649 -4984 4 1384 1106 277 141 35 chr5 104776849 104777511 -47759748 + L1MA4 LINE L1 5461 6192 -108 4 1384 344 152 41 61 chr5 104777527 104777558 -47759701 + (ACATG)n Simple_repeat Simple_repeat 3 32 0 4 1384 259 7 123 80 chr5 104777558 104777721 -47759538 + (ACTG)n Simple_repeat Simple_repeat 1 170 0 4 1384 344 152 41 61 chr5 104777721 104777836 -47759423 + (ACATG)n Simple_repeat Simple_repeat 4 117 0 4 1384 230 20 126 75 chr5 104777848 104778007 -47759252 + (ACTG)n Simple_repeat Simple_repeat 4 170 0 4 1384 207 158 39 69 chr5 104778011 104778113 -47759146 + (ACATG)n Simple_repeat Simple_repeat 4 102 0 4 1384 282 250 105 0 chr5 104778221 104778297 -47758962 - PB1D10 SINE Alu -1 116 33 4 1384 27 29 0 0 chr5 104778315 104778349 -47758910 + AT_rich Low_complexity Low_complexity 1 34 0 4 1384 207 0 0 0 chr5 104778373 104778396 -47758863 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1384 345 308 51 13 chr5 104778527 104778685 -47758574 + LTR82B Low_complexity ERVL 449 612 -218 4 1384 405 0 0 0 chr5 104779303 104779348 -47757911 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1384 1060 259 57 9 chr5 104779511 104779827 -47757432 - MTD LTR MaLR -88 331 1 4 1384 414 0 0 0 chr5 104779916 104779962 -47757297 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1384 680 279 126 4 chr5 104780021 104780251 -47757008 + MLT2B2 LTR ERVL 258 515 0 4 1384 279 0 0 0 chr5 104780567 104780598 -47756661 + (TC)n Simple_repeat Simple_repeat 2 32 0 4 1384 381 212 0 72 chr5 104780599 104780792 -47756467 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 1384 234 160 0 0 chr5 104780867 104780917 -47756342 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1384 209 150 0 48 chr5 104781676 104781718 -47755541 + C-rich Low_complexity Low_complexity 3 42 0 4 1384 3281 208 34 5 chr5 104782619 104782748 -47754511 - Lx5 LINE L1 -5 7045 6904 4 1384 288 0 0 0 chr5 104782748 104782780 -47754479 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1384 3281 208 34 5 chr5 104782780 104783299 -47753960 - Lx5 LINE L1 -147 6903 6379 4 1384 235 283 41 61 chr5 104785149 104785247 -47752012 - B1_Mus2 SINE Alu -51 96 1 4 1384 837 275 169 3 chr5 104785685 104786010 -47751249 + MTEb LTR MaLR 1 379 0 4 1384 216 178 0 0 chr5 104786382 104786427 -47750832 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1384 215 167 21 0 chr5 104787605 104787653 -47749606 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 4 1384 2364 203 56 36 chr5 104788866 104789422 -47747837 - Lx2B LINE L1 -3 6997 6431 4 1384 572 252 40 0 chr5 104789644 104789795 -47747464 - RSINE1 SINE B4 -1 164 8 4 1384 802 261 85 25 chr5 104790098 104790334 -47746925 + B4A SINE B4 43 292 0 4 1384 3097 58 24 0 chr5 104790397 104790773 -47746486 + IAPEY_LTR LTR ERVK 1 385 0 4 1384 59451 67 3 7 chr5 104790773 104798318 -47738941 + IAPEy-int LTR ERVK 1 7513 0 4 1384 2530 43 12 0 chr5 104798318 104798645 -47738614 + IAPEY_LTR LTR ERVK 55 385 0 4 1384 336 284 239 17 chr5 104799226 104799581 -47737678 + L1MC5 LINE L1 7251 7684 -277 4 1384 388 321 121 6 chr5 104800917 104801083 -47736176 + L1MDa LINE L1 463 647 -5986 4 1384 254 149 112 129 chr5 104801156 104801278 -47735981 - Lx9 LINE L1 -1 7643 7514 4 1384 324 83 0 0 chr5 104801278 104801326 -47735933 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1384 254 149 112 129 chr5 104801326 104801373 -47735886 - Lx9 LINE L1 -131 7513 7477 4 1384 432 135 0 0 chr5 104801374 104801448 -47735811 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1384 1580 253 430 7 chr5 104801448 104802234 -47735025 - Lx9 LINE L1 -127 7517 6382 4 1384 417 86 0 0 chr5 104802234 104802292 -47734967 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1384 1580 253 430 7 chr5 104802292 104802332 -47734927 - Lx9 LINE L1 -1263 6381 6342 4 1384 657 119 0 0 chr5 104802333 104802434 -47734825 + (TG)n Simple_repeat Simple_repeat 2 102 0 4 1384 793 138 20 7 chr5 104802477 104802630 -47734629 + (TATATG)n Simple_repeat Simple_repeat 4 158 0 4 1384 389 248 62 27 chr5 104802631 104802743 -47734516 + Lx9 LINE L1 5859 5974 -1670 4 1384 186 378 37 7 chr5 104803067 104803202 -47734057 - MIRc SINE MIR -130 138 1 4 1384 210 264 138 0 chr5 104803294 104803377 -47733882 - MIRc SINE MIR -97 165 72 4 1384 370 384 29 14 chr5 104803924 104804133 -47733126 - MIR SINE MIR -32 230 19 4 1384 323 82 327 45 chr5 104804890 104805000 -47732259 - B2_Mm2 SINE B2 -7 188 48 4 1384 1017 122 61 0 chr5 104805069 104805233 -47732026 - B2_Mm1t SINE B2 -16 177 4 4 1384 276 208 231 13 chr5 104805277 104805355 -47731904 + Lx9 LINE L1 6819 6913 -731 4 1384 245 150 0 48 chr5 104807471 104807534 -47729725 - B2_Mm2 SINE B2 -9 186 127 4 1384 1446 154 37 120 chr5 104807540 104807865 -47729394 - RMER19B LTR ERVK -602 300 3 4 1384 21 57 0 0 chr5 104808075 104808110 -47729149 + AT_rich Low_complexity Low_complexity 1 35 0 4 1384 401 88 0 62 chr5 104808327 104808424 -47728835 + (TATG)n Simple_repeat Simple_repeat 2 92 0 4 1384 334 325 33 0 chr5 104808759 104808879 -47728380 + PB1 SINE Alu 1 124 -3 4 1384 24 32 0 0 chr5 104809933 104809964 -47727295 + AT_rich Low_complexity Low_complexity 1 31 0 4 1384 229 271 14 0 chr5 104810470 104810491 -47726768 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 4 1384 2936 6 0 0 chr5 104810491 104810813 -47726446 - RLTRETN_Mm LTR ERVK 0 322 1 4 1384 229 271 14 0 chr5 104810813 104810861 -47726398 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 4 1384 892 204 34 37 chr5 104811133 104811584 -47725675 - RMER17C LTR ERVK -2 408 10 4 1384 232 296 62 36 chr5 104811588 104811700 -47725559 + Lx8 LINE L1 7358 7472 -1 4 1384 405 0 0 0 chr5 104811796 104811841 -47725418 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1384 3281 64 5 2 chr5 104811992 104812398 -47724861 + MTB_Mm LTR MaLR 1 407 0 4 1384 502 142 73 28 chr5 104813208 104813317 -47723942 - B1_Mur2 SINE Alu 0 149 36 4 1384 297 250 20 61 chr5 104814098 104814196 -47723063 - B4A SINE B4 -8 284 191 4 1384 524 287 40 0 chr5 104814283 104814433 -47722826 - RSINE1 SINE B4 -7 158 3 4 1384 416 301 258 17 chr5 104816418 104816710 -47720549 - ORR1D2 LTR MaLR -2 368 6 4 1384 372 22 0 0 chr5 104817469 104817514 -47719745 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1384 468 328 0 0 chr5 104817520 104817645 -47719614 - RSINE1 SINE B4 -38 127 3 4 1384 1585 232 232 22 chr5 104817826 104818649 -47718610 + Lx8 LINE L1 6468 7463 -10 4 1384 559 214 0 25 chr5 104818734 104818897 -47718362 + (CATATA)n Simple_repeat Simple_repeat 6 164 0 4 1384 2343 69 3 0 chr5 104819653 104819971 -47717288 - ORR1A2 LTR MaLR 0 327 9 4 1384 2429 135 59 9 chr5 104820576 104821032 -47716227 - RLTR26 LTR ERVK 0 642 164 4 1384 219 69 0 0 chr5 104821382 104821411 -47715848 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 1384 992 239 0 5 chr5 104821415 104821625 -47715634 - B3 SINE B2 -3 213 5 4 1384 1208 55 7 0 chr5 104821648 104821794 -47715465 - B1_Mm SINE Alu 0 147 1 4 1384 459 268 102 8 chr5 104821892 104822137 -47715122 - L1MB7 LINE L1 0 6184 5917 4 1384 270 239 263 8 chr5 104822709 104822827 -47714432 + B3A SINE B2 1 148 -50 4 1384 227 232 158 0 chr5 104822939 104823021 -47714238 + PB1D10 SINE Alu 23 117 0 4 1384 1345 50 0 38 chr5 104823066 104823513 -47713746 + (TCTCCC)n Simple_repeat Simple_repeat 1 430 0 4 1384 312 27 0 0 chr5 104823528 104823565 -47713694 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1384 240 155 67 33 chr5 104823565 104823617 -47713642 - MLT1B LTR MaLR -295 95 40 4 1384 186 133 0 0 chr5 104823794 104823824 -47713435 + (TCC)n Simple_repeat Simple_repeat 1 30 0 4 1384 387 268 167 89 chr5 104824822 104825356 -47711903 - MER34A LTR ERV1 -6 565 1 4 1384 239 299 109 68 chr5 104826333 104826480 -47710779 - MLT1D LTR MaLR 0 505 353 4 1384 346 313 216 5 chr5 104826517 104826716 -47710543 - MLT1D LTR MaLR -257 248 8 4 1384 291 242 191 88 chr5 104829243 104829351 -47707908 + RSINE1 SINE B4 16 143 -22 4 1384 360 0 0 0 chr5 104829351 104829391 -47707868 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1384 291 242 191 88 chr5 104829391 104829418 -47707841 + RSINE1 SINE B4 144 165 0 4 1384 229 259 0 0 chr5 104829422 104829476 -47707783 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1384 256 303 57 8 chr5 104829555 104829678 -47707581 + L1MA5 LINE L1 6165 6293 -7 4 1384 450 0 0 0 chr5 104829690 104829740 -47707519 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1384 605 302 45 1 chr5 104830066 104830322 -47706937 + L1MA4 LINE L1 5706 5969 -187 4 1384 664 212 20 17 chr5 104830770 104831091 -47706168 + CT-rich Low_complexity Low_complexity 1 321 0 4 1384 588 260 0 0 chr5 104831836 104831990 -47705269 + L1_Mur3 LINE L1 5286 5439 -441 4 1384 348 118 0 0 chr5 104832174 104832242 -47705017 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1384 387 0 0 0 chr5 104832367 104832410 -47704849 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1384 383 262 191 33 chr5 104832785 104833057 -47704202 - Lx8 LINE L1 -2 7471 7157 5 1384 242 29 29 0 chr5 104834468 104834502 -47702757 - MTC LTR MaLR -375 46 12 5 1384 447 354 7 0 chr5 104835408 104835555 -47701704 + RSINE1 SINE B4 3 150 -15 5 1384 28 48 0 0 chr5 104835555 104835597 -47701662 + AT_rich Low_complexity Low_complexity 1 42 0 5 1384 274 303 179 0 chr5 104836203 104836348 -47700911 - MER2B DNA MER2_type -6 330 160 5 1384 188 176 0 56 chr5 104836366 104836438 -47700821 + G-rich Low_complexity Low_complexity 5 72 0 5 1384 207 307 11 43 chr5 104837428 104837520 -47699739 + GA-rich Low_complexity Low_complexity 5 93 0 5 1384 531 263 0 0 chr5 104838230 104838344 -47698915 + B1F SINE Alu 5 118 -31 5 1384 1147 197 81 87 chr5 104838456 104838778 -47698481 + Lx5 LINE L1 6712 7031 -19 5 1384 339 25 0 0 chr5 104838778 104838818 -47698441 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 1384 502 364 40 77 chr5 104839170 104839548 -47697711 - LTR16A LTR ERVL -54 397 34 5 1384 3530 58 5 16 chr5 104839640 104840078 -47697181 + RLTR10C LTR ERVK 1 433 -3 5 1384 414 0 0 0 chr5 104840594 104840640 -47696619 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1384 374 0 22 0 chr5 104840970 104841016 -47696243 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1384 701 289 139 13 chr5 104841076 104841458 -47695801 - MER63B DNA AcHobo -6 430 1 5 1384 390 372 33 13 chr5 104842355 104842657 -47694602 + LTR82B Low_complexity ERVL 67 374 -456 5 1384 577 161 15 0 chr5 104842747 104842877 -47694382 + (CA)n Simple_repeat Simple_repeat 1 132 0 5 1384 766 62 30 15 chr5 104843771 104843902 -47693357 + (TCTA)n Simple_repeat Simple_repeat 2 134 0 5 1384 360 0 0 0 chr5 104843909 104843949 -47693310 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1384 625 301 47 49 chr5 104844336 104844676 -47692583 - MLT1A0 LTR MaLR -30 344 1 5 1384 333 316 70 45 chr5 104845558 104845800 -47691459 - L1MB8 LINE L1 0 6178 5931 5 1384 194 62 0 30 chr5 104846434 104846467 -47690792 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1384 21 0 0 0 chr5 104847064 104847085 -47690174 + AT_rich Low_complexity Low_complexity 1 21 0 5 1384 3992 74 21 4 chr5 104847370 104848204 -47689055 + L1VL1 LINE L1 571 1422 -2276 5 1384 318 247 95 22 chr5 104848873 104849094 -47688165 + B4 SINE B4 2 272 -20 5 1384 24 0 0 0 chr5 104849115 104849139 -47688120 + AT_rich Low_complexity Low_complexity 1 24 0 5 1384 749 231 70 5 chr5 104849218 104849418 -47687841 - URR1A DNA MER1_type -12 214 2 5 1384 665 272 51 0 chr5 104849907 104850102 -47687157 + ID_B1 SINE B4 3 207 -17 5 1384 286 310 0 0 chr5 104850126 104850213 -47687046 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 1384 327 140 0 0 chr5 104850231 104850288 -47686971 + HAL1-3A_ME LINE L1 1975 2031 -827 5 1384 833 89 8 0 chr5 104850765 104850889 -47686370 + (GGGA)n Simple_repeat Simple_repeat 2 126 0 5 1384 1226 48 0 0 chr5 104850942 104851088 -47686171 + B1_Mus2 SINE Alu 2 147 0 5 1384 21 0 0 0 chr5 104851620 104851641 -47685618 + AT_rich Low_complexity Low_complexity 1 21 0 5 1384 306 278 11 32 chr5 104851665 104851758 -47685501 - RSINE1 SINE B4 -20 145 55 5 1384 1214 92 7 0 chr5 104851775 104852049 -47685210 + (TC)n Simple_repeat Simple_repeat 1 276 0 5 1384 572 286 37 21 chr5 104852063 104852252 -47685007 - ID_B1 SINE B4 -17 207 16 5 1384 256 221 44 44 chr5 104852276 104852366 -47684893 - MIR SINE MIR 0 262 173 5 1384 966 18 0 0 chr5 104852380 104852492 -47684767 + (TCTCCC)n Simple_repeat Simple_repeat 4 115 0 5 1384 322 300 253 0 chr5 104852601 104852771 -47684488 - MER2 DNA MER2_type 0 345 133 5 1384 723 234 7 0 chr5 104853307 104853444 -47683815 - B1F SINE Alu -3 146 9 5 1384 327 212 0 0 chr5 104853481 104853561 -47683698 + (TTG)n Simple_repeat Simple_repeat 2 81 0 5 1384 377 254 8 41 chr5 104853586 104853709 -47683550 + Lx6 LINE L1 7284 7402 -58 5 1384 210 333 54 0 chr5 104856392 104856560 -47680699 + (TATG)n Simple_repeat Simple_repeat 1 177 0 5 1384 735 282 22 0 chr5 104856594 104856775 -47680484 - B4 SINE B4 0 292 108 5 1384 297 0 0 0 chr5 104856786 104856819 -47680440 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 5 1384 242 215 30 15 chr5 104856820 104856886 -47680373 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 5 1384 262 288 27 0 chr5 104856899 104856972 -47680287 - B4 SINE B4 -216 76 2 5 1385 324 70 0 0 chr5 104857845 104857888 -47679371 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1385 228 54 171 0 chr5 104857937 104858048 -47679211 + (GTTTG)n Simple_repeat Simple_repeat 2 131 0 5 1385 1182 82 0 0 chr5 104858064 104858210 -47679049 - B1_Mus2 SINE Alu -1 146 1 5 1385 194 288 15 0 chr5 104858474 104858540 -47678719 - MIR3 SINE MIR 0 208 142 5 1385 186 43 0 0 chr5 104858983 104859006 -47678253 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1385 315 49 0 0 chr5 104859595 104859636 -47677623 + (CATA)n Simple_repeat Simple_repeat 4 44 0 5 1385 210 71 0 0 chr5 104859780 104859808 -47677451 + (GGA)n Simple_repeat Simple_repeat 2 29 0 5 1385 465 242 5 43 chr5 104859878 104860064 -47677195 + GA-rich Low_complexity Low_complexity 1 179 0 5 1385 379 285 12 79 chr5 104860244 104860266 -47676993 + ID_B1 SINE B4 71 181 -43 5 1385 557 194 22 52 chr5 104860266 104860402 -47676857 + B1_Mm SINE Alu 9 140 -7 5 1385 741 181 0 0 chr5 104860534 104860767 -47676492 + (TG)n Simple_repeat Simple_repeat 1 233 0 5 1385 239 169 123 27 chr5 104863153 104863226 -47674033 - MIR SINE MIR -148 114 35 5 1385 457 188 0 30 chr5 104863520 104863619 -47673640 - B1F1 SINE Alu 0 149 54 5 1385 873 98 21 0 chr5 104864450 104864593 -47672666 + (TC)n Simple_repeat Simple_repeat 1 146 0 5 1385 336 83 0 0 chr5 104864868 104864916 -47672343 + (TTA)n Simple_repeat Simple_repeat 1 48 0 5 1385 21 36 0 0 chr5 104865785 104865813 -47671446 + AT_rich Low_complexity Low_complexity 1 28 0 5 1385 620 256 103 0 chr5 104866788 104866983 -47670276 + B3 SINE B2 2 216 0 5 1385 195 129 0 0 chr5 104868322 104868353 -47668906 + (ATG)n Simple_repeat Simple_repeat 1 31 0 5 1385 482 57 14 0 chr5 104870437 104870507 -47666752 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1385 4536 297 37 95 chr5 104870616 104871166 -47666093 + Lx9 LINE L1 5696 6341 -1303 5 1385 563 40 14 0 chr5 104871166 104871240 -47666019 + (GA)n Simple_repeat Simple_repeat 1 75 0 5 1385 4536 241 32 95 chr5 104871240 104871626 -47665633 + Lx9 LINE L1 6342 6696 -948 5 1385 6128 90 26 30 chr5 104871626 104872531 -47664728 - RLTR13D6 LTR ERVK 0 902 1 5 1385 4536 241 32 95 chr5 104872531 104872975 -47664284 + Lx9 LINE L1 6697 7123 -521 5 1385 3116 84 33 88 chr5 104872975 104873485 -47663774 - RLTR45 LTR ERVK 0 482 1 5 1385 4536 241 32 95 chr5 104873485 104873840 -47663419 + Lx9 LINE L1 7124 7483 -161 5 1385 387 0 0 0 chr5 104873843 104873886 -47663373 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1385 372 234 0 0 chr5 104873919 104873996 -47663263 + GA-rich Low_complexity Low_complexity 1 77 0 5 1385 719 124 16 0 chr5 104874018 104874139 -47663120 + (GAAA)n Simple_repeat Simple_repeat 1 123 0 5 1385 336 255 138 46 chr5 104874265 104874417 -47662842 + B3 SINE B2 51 216 0 5 1385 204 97 0 0 chr5 104874571 104874602 -47662657 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1385 425 302 102 53 chr5 104874997 104875263 -47661996 - LTR41 LTR ERVL -20 738 460 5 1385 437 273 83 22 chr5 104875377 104875557 -47661702 - LTR41 LTR ERVL -573 195 5 5 1385 360 0 0 0 chr5 104875583 104875623 -47661636 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1385 2115 179 15 10 chr5 104875664 104876060 -47661199 - Lx LINE L1 -4 6650 6253 5 1385 210 37 0 0 chr5 104876061 104876088 -47661171 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 5 1385 262 123 17 17 chr5 104876206 104876264 -47660995 + T-rich Low_complexity Low_complexity 3 60 0 5 1385 1215 107 37 0 chr5 104876397 104876584 -47660675 + B2_Mm2 SINE B2 2 195 0 5 1385 3089 91 25 105 chr5 104877224 104877788 -47659471 + MURVY-LTR LTR ERV1 1 519 0 5 1385 245 245 157 27 chr5 104878111 104878258 -47659001 + L1MD LINE L1 3045 3210 -2936 5 1385 319 288 109 90 chr5 104878558 104878732 -47658527 + MLT1C LTR MaLR 106 364 -103 5 1385 2608 106 112 94 chr5 104878732 104879242 -47658017 + MURVY-LTR LTR ERV1 1 519 0 5 1385 319 318 49 76 chr5 104879242 104879345 -47657914 + MLT1C LTR MaLR 365 467 0 5 1385 689 145 129 8 chr5 104879345 104879477 -47657782 + B1_Mus1 SINE Alu 1 148 0 5 1385 186 43 0 0 chr5 104879477 104879500 -47657759 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 5 1385 788 284 26 139 chr5 104879655 104880038 -47657221 + L1MD LINE L1 3496 3811 -2335 5 1385 3286 53 8 0 chr5 104880038 104880435 -47656824 + MTB LTR MaLR 1 400 0 5 1385 788 284 26 139 chr5 104880435 104880582 -47656677 + L1MD LINE L1 3812 3966 -2180 5 1385 329 335 112 18 chr5 104880603 104880773 -47656486 + B4A SINE B4 22 207 -85 5 1385 362 197 17 17 chr5 104880816 104880935 -47656324 + (CA)n Simple_repeat Simple_repeat 1 119 0 5 1385 615 235 0 0 chr5 104881791 104881910 -47655349 + ID_B1 SINE B4 86 204 -20 5 1385 468 48 0 0 chr5 104881915 104881978 -47655281 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1385 257 385 35 66 chr5 104882211 104882439 -47654820 - MLT1K LTR MaLR -347 248 28 5 1385 727 196 86 38 chr5 104883914 104883947 -47653312 - B2_Mm2 SINE B2 0 195 158 5 1385 237 65 0 0 chr5 104883947 104883978 -47653281 + (TA)n Simple_repeat Simple_repeat 1 31 0 5 1385 727 196 86 38 chr5 104883978 104884130 -47653129 - B2_Mm2 SINE B2 -38 157 1 5 1385 287 191 79 26 chr5 104885391 104885495 -47651764 - MTEa LTR MaLR 0 379 256 5 1385 384 314 83 33 chr5 104885782 104885963 -47651296 + MLT1A0 LTR MaLR 164 353 -12 5 1385 195 248 196 56 chr5 104885981 104886022 -47651237 - MIR SINE MIR -62 200 157 5 1385 2494 65 9 24 chr5 104886022 104886354 -47650905 + IAPLTR2b LTR ERVK 1 327 0 5 1385 195 248 196 56 chr5 104886354 104886419 -47650840 - MIR SINE MIR -106 156 79 5 1385 204 277 106 29 chr5 104886581 104886685 -47650574 - MER5A DNA MER1_type -3 186 75 5 1385 688 276 107 66 chr5 104887063 104887428 -47649831 + MLT1B LTR MaLR 11 390 0 5 1385 414 0 0 0 chr5 104889889 104889935 -47647324 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1385 248 328 53 110 chr5 104890199 104890408 -47646851 + MIRb SINE MIR 17 213 -55 6 1385 255 306 35 0 chr5 104890886 104890971 -47646288 + MER21B LTR ERV1 351 438 -425 6 1385 23 0 0 0 chr5 104891072 104891095 -47646164 + AT_rich Low_complexity Low_complexity 1 23 0 6 1385 232 299 65 0 chr5 104891447 104891524 -47645735 + MIR3 SINE MIR 97 178 -30 6 1385 264 380 5 58 chr5 104892403 104892610 -47644649 + MER20 DNA MER1_type 24 219 0 6 1385 474 65 0 0 chr5 104892721 104892783 -47644476 + (TC)n Simple_repeat Simple_repeat 2 63 0 6 1385 365 211 70 50 chr5 104892945 104893045 -47644214 + B4 SINE B4 169 270 -22 6 1385 207 384 29 0 chr5 104893175 104893313 -47643946 - L2c LINE L2 0 3387 3246 6 1385 582 190 0 57 chr5 104893540 104893663 -47643596 + PB1D10 SINE Alu 2 117 0 6 1385 1188 41 0 7 chr5 104895696 104895844 -47641415 - B1_Mus2 SINE Alu 0 147 1 6 1385 357 82 0 0 chr5 104896567 104896616 -47640643 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1385 1131 66 0 0 chr5 104896969 104897106 -47640153 + B1_Mus2 SINE Alu 1 137 -10 6 1385 1009 212 14 14 chr5 104897133 104897348 -47639911 + B3 SINE B2 1 215 -1 6 1385 27 49 0 0 chr5 104897421 104897462 -47639797 + AT_rich Low_complexity Low_complexity 1 41 0 6 1385 392 339 0 0 chr5 104897586 104897867 -47639392 + (TG)n Simple_repeat Simple_repeat 1 281 0 6 1385 279 292 175 0 chr5 104897871 104897991 -47639268 - B4A SINE B4 -2 290 150 6 1385 25 0 0 0 chr5 104898358 104898383 -47638876 + AT_rich Low_complexity Low_complexity 1 25 0 6 1385 346 85 0 0 chr5 104898621 104898668 -47638591 - ORR1A2 LTR MaLR -8 318 272 6 1385 7628 59 5 4 chr5 104898668 104899621 -47637638 - L1Md_F2 LINE L1 -14 6568 5615 6 1385 1889 89 10 38 chr5 104899622 104899915 -47637344 - ORR1A2 LTR MaLR -42 285 1 6 1385 1134 82 0 0 chr5 104900781 104900927 -47636332 - B1_Mus2 SINE Alu -1 146 1 6 1385 557 222 163 6 chr5 104901010 104901182 -47636077 + MTD LTR MaLR 207 405 -14 6 1385 405 313 0 29 chr5 104902538 104902640 -47634619 - RSINE1 SINE B4 -20 145 47 6 1385 2941 26 6 175 chr5 104902643 104903112 -47634147 - RLTR10 LTR ERVK 0 390 1 6 1385 8860 22 2 0 chr5 104903114 104904107 -47633152 - RLTR10-int LTR ERVK -3 1984 990 6 1385 373 271 31 8 chr5 104904189 104904319 -47632940 - RLTR10-int LTR ERVK -5987 1594 1462 6 1385 8241 35 2 2 chr5 104904383 104905341 -47631918 - RLTR10-int LTR ERVK -989 998 41 6 1385 2514 29 7 177 chr5 104905361 104905824 -47631435 - RLTR10 LTR ERVK -6 384 1 6 1385 435 19 0 0 chr5 104906499 104906551 -47630708 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1385 24 0 0 0 chr5 104907396 104907420 -47629839 + AT_rich Low_complexity Low_complexity 1 24 0 6 1385 247 179 39 0 chr5 104907459 104907537 -47629722 + (TA)n Simple_repeat Simple_repeat 1 81 0 6 1385 216 211 0 34 chr5 104908177 104908236 -47629023 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1385 708 193 60 60 chr5 104908549 104908731 -47628528 + B3A SINE B2 1 182 -16 6 1385 3069 61 41 3 chr5 104910262 104910654 -47626605 - MTB_Mm LTR MaLR 0 407 1 6 1385 432 161 11 6 chr5 104911569 104911753 -47625506 + (CA)n Simple_repeat Simple_repeat 1 185 0 6 1385 316 151 25 76 chr5 104911753 104911832 -47625427 + HAL1-3A_ME LINE L1 1975 2049 -809 6 1385 1588 53 0 0 chr5 104912654 104912842 -47624417 + B2_Mm1t SINE B2 1 188 -5 6 1385 384 59 0 0 chr5 104914282 104914333 -47622926 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1385 181 336 91 16 chr5 104914878 104914999 -47622260 - L2a LINE L2 -2 3424 3295 6 1385 360 0 0 0 chr5 104915868 104915908 -47621351 + (ATG)n Simple_repeat Simple_repeat 2 41 0 6 1385 225 234 0 0 chr5 104916202 104916249 -47621010 + G-rich Low_complexity Low_complexity 1 47 0 6 1385 1284 58 0 0 chr5 104916887 104917058 -47620201 + B2_Mm2 SINE B2 3 173 -22 6 1385 191 324 0 63 chr5 104917727 104917806 -47619453 + L2a LINE L2 3347 3420 -6 6 1385 460 235 148 16 chr5 104918044 104918226 -47619033 - L1MB5 LINE L1 -210 5964 5759 6 1385 697 305 19 54 chr5 104921830 104922090 -47615169 + B4A SINE B4 1 251 -41 6 1385 405 0 0 0 chr5 104922472 104922517 -47614742 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1385 314 249 42 19 chr5 104922551 104922646 -47614613 + B1_Mur2 SINE Alu 12 104 -13 6 1385 369 0 0 0 chr5 104922648 104922689 -47614570 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 6 1385 603 306 8 83 chr5 104922751 104923061 -47614198 + B4A SINE B4 2 290 -2 6 1385 811 208 57 10 chr5 104923508 104923702 -47613557 - MTD LTR MaLR -203 216 14 6 1385 25 0 0 0 chr5 104924062 104924087 -47613172 + AT_rich Low_complexity Low_complexity 1 25 0 6 1385 198 0 0 0 chr5 104924369 104924391 -47612868 + (TC)n Simple_repeat Simple_repeat 1 22 0 6 1385 297 0 0 0 chr5 104924391 104924423 -47612836 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1385 684 290 80 13 chr5 104924842 104925143 -47612116 + Tigger6a DNA MER2_type 18 338 -745 6 1385 711 233 41 36 chr5 104925163 104925359 -47611900 + B3A SINE B2 1 197 -1 6 1385 23 0 0 0 chr5 104925385 104925408 -47611851 + AT_rich Low_complexity Low_complexity 1 23 0 6 1385 1231 42 0 0 chr5 104925410 104925552 -47611707 - B1_Mus1 SINE Alu -6 142 1 6 1385 317 331 55 17 chr5 104925649 104925830 -47611429 + Tigger6a DNA MER2_type 446 633 -450 6 1385 818 205 91 58 chr5 104925843 104926117 -47611142 - ORR1D1 LTR MaLR -2 372 90 6 1385 717 43 0 0 chr5 104926126 104926218 -47611041 + MTA_Mm LTR MaLR 1 92 -304 6 1385 438 36 0 0 chr5 104926212 104926268 -47610991 + MTB LTR MaLR 345 400 0 6 1385 309 235 0 14 chr5 104926275 104926344 -47610915 - ORR1D1 LTR MaLR -299 75 8 6 1385 598 305 77 40 chr5 104926347 104926723 -47610536 + Tigger6a DNA MER2_type 644 1033 -50 6 1385 1063 58 65 0 chr5 104926900 104927038 -47610221 + B1_Mus1 SINE Alu 2 148 0 6 1385 253 289 194 5 chr5 104928655 104928846 -47608413 - L1M4 LINE L1 -3451 2695 2469 6 1385 338 224 59 25 chr5 104928930 104929049 -47608210 - L1M4b LINE L1 -3695 3639 3517 6 1385 488 285 94 7 chr5 104929049 104929187 -47608072 + RSINE1 SINE B4 8 157 -8 6 1385 674 246 102 46 chr5 104929411 104929836 -47607423 - L1M4b LINE L1 -4502 2832 2380 6 1385 1507 39 0 22 chr5 104930172 104930356 -47606903 + B2_Mm2 SINE B2 2 181 -14 6 1385 1167 82 0 0 chr5 104931048 104931194 -47606065 + B1_Mus2 SINE Alu 2 147 0 6 1385 24 32 0 0 chr5 104931579 104931610 -47605649 + AT_rich Low_complexity Low_complexity 1 31 0 6 1385 821 209 29 49 chr5 104931723 104931969 -47605290 - RMER16 LTR ERVK 0 533 293 6 1385 313 222 74 37 chr5 104932001 104932167 -47605092 - RMER16 LTR ERVK -187 346 214 6 1385 796 59 244 0 chr5 104933368 104933487 -47603772 + B1_Mus1 SINE Alu 1 148 0 6 1385 605 221 7 21 chr5 104933965 104934108 -47603151 - B1_Mur1 SINE Alu 0 149 9 6 1385 1253 207 62 13 chr5 104935135 104935223 -47602036 - ORR1D1 LTR MaLR 0 374 276 6 1385 4889 41 9 0 chr5 104935223 104935805 -47601454 + LTRIS_Mus LTR ERV1 1 587 0 6 1385 1253 207 62 13 chr5 104935805 104936024 -47601235 - ORR1D1 LTR MaLR -99 275 52 6 1385 1034 199 106 0 chr5 104936060 104936286 -47600973 + L1_Rod LINE L1 5532 5781 -66 6 1385 287 267 40 0 chr5 104936792 104936867 -47600392 + Lx9 LINE L1 6956 7033 -611 6 1385 210 150 0 0 chr5 104937269 104937309 -47599950 + (C)n Simple_repeat Simple_repeat 1 40 0 6 1385 212 229 56 28 chr5 104937520 104937628 -47599631 + (CGGG)n Simple_repeat Simple_repeat 3 113 0 6 1385 780 136 101 25 chr5 104938526 104938684 -47598575 + URR1B DNA MER1_type 56 225 0 6 1385 2205 170 94 34 chr5 104939228 104939710 -47597549 - Lx4B LINE L1 -11 7047 6506 6 1385 2122 90 0 14 chr5 104939711 104940004 -47597255 - Lx4B LINE L1 -1183 5875 5587 6 1385 505 248 53 77 chr5 104941110 104941280 -47595979 + B2_Mm2 SINE B2 1 166 -29 6 1385 232 295 12 25 chr5 104942483 104942563 -47594696 - RLTR20A2 LTR ERVK -418 160 82 6 1385 285 175 0 0 chr5 104942590 104942647 -47594612 - RLTR12A LTR ERVK -498 70 14 6 1385 376 339 88 22 chr5 104943027 104943253 -47594006 - MLT1E2 LTR MaLR -137 490 250 6 1385 282 336 51 7 chr5 104943283 104943421 -47593838 - MLT1E2 LTR MaLR -419 205 62 6 1385 1114 146 104 10 chr5 104945200 104945401 -47591858 - URR1A DNA MER1_type -6 220 1 6 1385 220 309 0 0 chr5 104950427 104950482 -47586777 + GA-rich Low_complexity Low_complexity 5 59 0 6 1385 208 317 19 28 chr5 104950970 104951077 -47586182 + GA-rich Low_complexity Low_complexity 4 109 0 6 1385 1165 55 7 7 chr5 104951791 104951939 -47585320 + B1_Mus1 SINE Alu 1 148 0 6 1385 508 282 8 22 chr5 104952114 104952248 -47585011 + RSINE1 SINE B4 1 132 -33 6 1385 486 236 274 16 chr5 104952411 104952721 -47584538 - L1MB7 LINE L1 -47 6137 5748 6 1385 220 267 67 5 chr5 104953401 104953483 -47583776 - MIRb SINE MIR -50 218 129 6 1385 207 143 0 0 chr5 104953652 104953687 -47583572 + L2a LINE L2 3355 3389 -37 6 1385 437 250 9 9 chr5 104954067 104954176 -47583083 - MTE-int LTR MaLR -45 1535 1427 6 1385 1140 166 204 0 chr5 104954215 104954450 -47582809 + ORR1B1 LTR MaLR 1 283 -111 6 1385 834 271 14 24 chr5 104955881 104956093 -47581166 + ID_B1 SINE B4 5 214 -10 6 1385 1247 259 11 11 chr5 104956134 104956403 -47580856 + B4 SINE B4 1 269 -23 6 1385 351 0 0 0 chr5 104956411 104956450 -47580809 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1385 195 292 235 17 chr5 104956679 104956794 -47580465 - L2b LINE L2 -38 3337 3198 6 1385 1157 74 0 0 chr5 104958075 104958223 -47579036 - B1_Mus1 SINE Alu 0 148 1 6 1385 23 0 0 0 chr5 104958264 104958287 -47578972 + AT_rich Low_complexity Low_complexity 1 23 0 6 1385 872 143 0 15 chr5 104958327 104958462 -47578797 - B1_Mus1 SINE Alu 0 148 16 6 1385 21930 128 90 5 chr5 104958881 104964578 -47572681 - L1_Mus3 LINE L1 -6 6632 412 6 1385 21 57 0 0 chr5 104964976 104965011 -47572248 + AT_rich Low_complexity Low_complexity 1 35 0 6 1385 332 316 34 26 chr5 104965659 104965776 -47571483 + RSINE1 SINE B4 25 142 -23 7 1385 657 246 124 10 chr5 104966104 104966297 -47570962 + B3 SINE B2 2 216 0 7 1385 1171 68 0 0 chr5 104966448 104966595 -47570664 - B1_Mus2 SINE Alu 0 147 1 7 1385 356 312 21 0 chr5 104968162 104968258 -47569001 + ID_B1 SINE B4 82 179 -45 7 1385 231 297 64 57 chr5 104968395 104968552 -47568707 - RSINE1 SINE B4 -5 160 3 7 1385 1635 26 0 16 chr5 104969278 104969472 -47567787 + B2_Mm1a SINE B2 2 192 -1 7 1385 885 47 153 15 chr5 104969486 104969617 -47567642 + B1_Mur4 SINE Alu 2 150 0 7 1385 1262 97 26 21 chr5 104969651 104969841 -47567418 + B2_Mm2 SINE B2 4 194 -1 7 1385 21 36 0 0 chr5 104970660 104970688 -47566571 + AT_rich Low_complexity Low_complexity 1 28 0 7 1385 242 114 0 28 chr5 104970705 104970741 -47566518 - B2_Mm2 SINE B2 -145 50 16 7 1385 2516 156 21 34 chr5 104970874 104971438 -47565821 - L1_Mur3 LINE L1 -2716 3164 2608 7 1385 22 0 0 0 chr5 104971659 104971681 -47565578 + AT_rich Low_complexity Low_complexity 1 22 0 7 1385 25153 138 13 8 chr5 104971757 104977278 -47559981 - L1_Mus4 LINE L1 -7 6629 1076 7 1385 1069 145 33 6 chr5 104977278 104977458 -47559801 + B2_Mm2 SINE B2 1 185 -10 7 1385 3190 137 3 36 chr5 104977458 104977767 -47559492 - L1_Mus4 LINE L1 -5582 1075 779 7 1385 273 193 0 0 chr5 104977773 104977830 -47559429 - MurSatRep1 Unknown Unknown -1138 999 943 7 1385 737 144 40 0 chr5 104977826 104977951 -47559308 - MurSatRep1 Unknown Unknown -1397 740 611 7 1385 816 185 213 66 chr5 104978807 104978836 -47558423 + Lx7 LINE L1 7260 7282 -414 7 1385 1251 237 118 3 chr5 104978836 104979175 -47558084 + RLTR14 LTR ERV1 5 382 0 7 1385 816 185 213 66 chr5 104979175 104979526 -47557733 + Lx7 LINE L1 7283 7696 0 7 1385 411 338 110 10 chr5 104982126 104982335 -47554924 - LTR16C LTR ERVL -15 474 245 7 1385 418 268 45 0 chr5 104982418 104982530 -47554729 + PB1D10 SINE Alu 1 117 0 7 1385 1239 48 0 0 chr5 104983336 104983483 -47553776 + B1_Mus2 SINE Alu 1 147 0 7 1385 2774 219 157 27 chr5 104983490 104984290 -47552969 - Lx6 LINE L1 -19 7441 6526 7 1385 1852 171 63 9 chr5 104984290 104984638 -47552621 + ORR1B2 LTR MaLR 1 367 0 7 1385 2774 219 157 27 chr5 104984638 104984731 -47552528 - Lx6 LINE L1 -935 6525 6432 7 1385 739 173 38 19 chr5 104984729 104984888 -47552371 + L1_Rod LINE L1 2130 2291 -3556 7 1385 280 113 94 0 chr5 104984887 104984940 -47552319 + Lx9 LINE L1 5165 5222 -625 7 1385 541 232 163 10 chr5 104985026 104985235 -47552024 + Lx9 LINE L1 5807 6047 -1597 7 1385 2373 215 64 2 chr5 104985387 104985936 -47551323 + Lx9 LINE L1 6330 6912 -732 7 1385 385 341 56 26 chr5 104985937 104986169 -47551090 + L1MC4 LINE L1 7182 7420 -622 7 1385 356 306 18 27 chr5 104986817 104986931 -47550328 + B4A SINE B4 37 149 -143 7 1385 610 208 184 92 chr5 104986953 104987356 -47549903 + Lx7 LINE L1 7253 7692 -4 7 1385 268 250 0 0 chr5 104987356 104987408 -47549851 + B4A SINE B4 216 267 -25 7 1385 378 0 0 0 chr5 104987415 104987457 -47549802 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1386 314 186 75 75 chr5 104988748 104988841 -47548418 + RLTR23 LTR ERV1 15 107 -323 7 1386 698 128 89 57 chr5 104988845 104989002 -47548257 + RLTR22_Mus LTR ERVK 550 711 -1097 7 1386 185 94 31 0 chr5 104989301 104989333 -47547926 + (GA)n Simple_repeat Simple_repeat 2 34 0 7 1386 1972 180 24 129 chr5 104989971 104990586 -47546673 + RLTR31A_Mm LTR ERVK 1 557 0 7 1386 213 94 0 0 chr5 104990616 104990648 -47546611 + (T)n Simple_repeat Simple_repeat 1 32 0 7 1386 1415 56 45 5 chr5 104990655 104990854 -47546405 - L1_Mus3 LINE L1 -7 6631 6425 7 1386 1189 41 0 7 chr5 104991043 104991190 -47546069 + B1_Mus2 SINE Alu 2 147 0 7 1386 1125 75 0 0 chr5 104991515 104991746 -47545513 + (TC)n Simple_repeat Simple_repeat 1 231 0 7 1386 207 114 0 0 chr5 104992170 104992205 -47545054 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1386 442 297 44 19 chr5 104992220 104992378 -47544881 - RSINE1 SINE B4 0 165 4 7 1386 34 0 0 0 chr5 104992794 104992828 -47544431 + AT_rich Low_complexity Low_complexity 1 34 0 7 1386 834 235 36 0 chr5 104992836 104993032 -47544227 + B3 SINE B2 2 204 -12 7 1386 378 0 0 0 chr5 104993035 104993077 -47544182 + (TAAAA)n Simple_repeat Simple_repeat 4 45 0 7 1386 276 275 127 9 chr5 104993318 104993428 -47543831 - B1_Mur4 SINE Alu -20 130 8 7 1386 416 184 10 0 chr5 104993432 104993535 -47543724 + CT-rich Low_complexity Low_complexity 2 105 0 7 1386 180 0 0 0 chr5 104993539 104993559 -47543700 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 7 1386 225 0 0 0 chr5 104994193 104994218 -47543041 + (TTG)n Simple_repeat Simple_repeat 3 27 0 7 1386 2424 202 41 38 chr5 104996679 104997129 -47540130 + RLTR20B3 LTR ERVK 21 479 -98 7 1386 552 15 0 0 chr5 104997129 104997194 -47540065 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1386 441 0 0 0 chr5 104997194 104997242 -47540017 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 1386 2424 202 41 38 chr5 104997242 104997345 -47539914 + RLTR20B3 LTR ERVK 480 576 -1 7 1386 588 174 28 70 chr5 104997646 104997788 -47539471 + B1_Mur4 SINE Alu 15 150 0 7 1386 213 121 0 0 chr5 104997788 104997821 -47539438 + (GGAGAA)n Simple_repeat Simple_repeat 6 38 0 7 1386 265 180 0 0 chr5 104998541 104998591 -47538668 + MTC LTR MaLR 1 50 -371 7 1386 913 158 111 0 chr5 104999827 104999998 -47537261 - ORR1A3 LTR MaLR 0 326 137 7 1386 332 87 0 0 chr5 105000001 105000047 -47537212 - ORR1A3 LTR MaLR -193 133 88 1 1386 750 273 33 78 chr5 105000283 105000589 -47536670 + RMER13A LTR ERVK 569 860 0 2 1386 738 187 17 45 chr5 105002884 105003063 -47534196 - B2_Mm2 SINE B2 -18 177 4 3 1386 504 184 0 0 chr5 105003298 105003396 -47533863 + (TA)n Simple_repeat Simple_repeat 2 99 0 4 1386 255 152 0 0 chr5 105003585 105003631 -47533628 + T-rich Low_complexity Low_complexity 4 49 0 5 1386 845 182 0 7 chr5 105003631 105003780 -47533479 - B1_Mus1 SINE Alu 0 148 1 6 1386 1087 292 26 40 chr5 105003817 105004242 -47533017 - Lx6 LINE L1 -12 7448 7030 7 1386 981 308 69 22 chr5 105004240 105004791 -47532468 - Lx6 LINE L1 -884 6576 6000 7 1386 2425 258 23 16 chr5 105004792 105005658 -47531601 - Lx6 LINE L1 -134 5746 4875 7 1386 2146 240 24 101 chr5 105005658 105006284 -47530975 + RLTR25B LTR ERVK 1 578 -450 8 1386 1444 52 0 35 chr5 105006284 105006483 -47530776 + B2_Mm1t SINE B2 1 192 -1 9 1386 2146 240 24 101 chr5 105006483 105006566 -47530693 + RLTR25B LTR ERVK 579 655 -373 8 1386 4426 44 2 0 chr5 105006566 105007130 -47530129 - L1Md_F2 LINE L1 -431 6151 5587 1 1386 1389 209 18 0 chr5 105007125 105007451 -47529808 + L1_Mur2 LINE L1 4204 4535 -1342 1 1386 23 68 0 0 chr5 105007479 105007523 -47529736 + AT_rich Low_complexity Low_complexity 1 44 0 1 1386 1075 76 7 0 chr5 105008022 105008167 -47529092 + B1_Mm SINE Alu 2 147 0 1 1386 228 143 0 0 chr5 105008170 105008212 -47529047 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1386 5194 105 32 2 chr5 105008334 105009196 -47528063 - MusHAL1 LINE L1 -633 2079 1192 1 1386 5783 236 30 45 chr5 105009198 105011069 -47526190 + MurSatRep1 Unknown Unknown 293 2135 -2 1 1386 497 326 24 24 chr5 105011411 105012133 -47525126 + MurSatRep1 Unknown Unknown 1747 2049 -88 1 1386 277 349 0 0 chr5 105012063 105012212 -47525047 + MMSAT4 Satellite Satellite 20 168 0 1 1386 880 126 59 7 chr5 105013683 105013835 -47523424 - B2_Mm2 SINE B2 -10 185 26 1 1386 951 81 14 0 chr5 105013939 105014087 -47523172 - MusHAL1 LINE L1 -632 2080 1931 2 1386 1498 186 34 3 chr5 105015051 105015343 -47521916 + ORR1A2 LTR MaLR 27 327 0 2 1386 690 47 0 0 chr5 105015524 105015610 -47521649 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 1386 342 268 237 34 chr5 105016148 105016384 -47520875 - B4A SINE B4 0 292 9 2 1386 1173 49 0 7 chr5 105016469 105016613 -47520646 + B1_Mus1 SINE Alu 1 143 -5 2 1386 447 125 0 0 chr5 105016752 105016824 -47520435 + (TC)n Simple_repeat Simple_repeat 1 72 0 2 1386 558 286 18 6 chr5 105016824 105016989 -47520270 - Lx6 LINE L1 -129 7344 7178 2 1386 1285 271 35 40 chr5 105017203 105017773 -47519486 - Lx6 LINE L1 -1339 6121 5553 2 1386 1140 22 0 0 chr5 105017774 105017912 -47519347 + RLTR1B LTR ERV1 1 138 -374 2 1386 982 145 6 0 chr5 105017915 105018074 -47519185 + RLTR1B LTR ERV1 353 512 0 2 1386 1750 251 30 26 chr5 105018074 105018753 -47518506 - Lx6 LINE L1 -325 5555 4875 2 1386 2999 248 20 145 chr5 105018753 105019928 -47517331 + RLTR25B LTR ERVK 1 1028 0 2 1386 1345 237 166 48 chr5 105019947 105020726 -47516533 - Lx6 LINE L1 -1021 4859 3989 2 1386 333 319 0 21 chr5 105020770 105020863 -47516396 - PB1D9 SINE Alu -29 91 1 3 1386 369 181 0 0 chr5 105020892 105020986 -47516273 + CT-rich Low_complexity Low_complexity 1 94 0 3 1386 444 362 28 5 chr5 105021001 105021212 -47516047 - B3 SINE B2 0 216 1 3 1386 1738 243 75 70 chr5 105021307 105021918 -47515341 - RLTR18 LTR ERVK 0 616 3 3 1386 3333 75 2 5 chr5 105022119 105022560 -47514699 - L1_Mus1 LINE L1 -2 6565 6126 3 1386 321 26 0 0 chr5 105022574 105022612 -47514647 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 1386 997 106 0 7 chr5 105022612 105022748 -47514511 - B1_Mus2 SINE Alu -11 136 1 3 1386 25 65 0 0 chr5 105022832 105022878 -47514381 + AT_rich Low_complexity Low_complexity 1 46 0 3 1386 301 286 82 67 chr5 105022910 105023125 -47514134 + MT2A LTR ERVL 336 528 -73 3 1386 864 150 7 0 chr5 105023459 105023599 -47513660 - B1_Mus1 SINE Alu -6 142 2 3 1386 3905 199 10 5 chr5 105023599 105024481 -47512778 - L1_Mur1 LINE L1 -770 5116 4230 4 1386 2271 159 85 2 chr5 105024555 105024990 -47512269 - Lx3C LINE L1 -2 6974 6504 4 1386 693 251 13 30 chr5 105024994 105025228 -47512031 - Lx5 LINE L1 -1124 5926 5697 4 1386 929 227 0 25 chr5 105025237 105025481 -47511778 + MurSatRep1 Unknown Unknown 61 298 -1839 4 1386 4037 204 18 38 chr5 105025506 105026346 -47510913 - Lx4A LINE L1 -1 7057 6234 4 1386 239 0 32 0 chr5 105026346 105026377 -47510882 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1386 932 118 15 0 chr5 105026377 105026513 -47510746 - B1_Mus2 SINE Alu -9 138 1 4 1386 4037 204 18 38 chr5 105026513 105026609 -47510650 - Lx4A LINE L1 -825 6233 6140 4 1386 10703 64 1 1 chr5 105026622 105028075 -47509184 + L1Md_F2 LINE L1 4134 5586 -297 4 1386 8041 50 0 4 chr5 105028076 105029061 -47508198 + L1Md_F2 LINE L1 5588 6568 -14 4 1386 767 133 78 0 chr5 105029061 105029209 -47508050 - B2_Mm2 SINE B2 -3 190 27 4 1386 1408 104 25 0 chr5 105029309 105029550 -47507709 - MusHAL1 LINE L1 -624 2088 1842 4 1386 750 138 0 0 chr5 105029554 105029677 -47507582 + (TTCC)n Simple_repeat Simple_repeat 2 124 0 5 1386 22 0 0 0 chr5 105029677 105029699 -47507560 + AT_rich Low_complexity Low_complexity 1 22 0 5 1386 372 210 0 101 chr5 105029706 105029726 -47507533 - L1_Mur3 LINE L1 -2817 3063 3051 5 1386 893 140 15 0 chr5 105029726 105029862 -47507397 - B1_Mus2 SINE Alu -8 139 2 5 1386 702 73 0 44 chr5 105029862 105029979 -47507280 - L1_Mur3 LINE L1 -861 3053 2940 5 1386 1927 148 11 57 chr5 105029972 105030413 -47506846 - L1VL2 LINE L1 -5717 618 12 5 1386 280 105 0 0 chr5 105030416 105030454 -47506805 - B2_Mm2 SINE B2 -156 39 2 4 1386 29 0 0 0 chr5 105030546 105030575 -47506684 + AT_rich Low_complexity Low_complexity 1 29 0 5 1386 435 367 45 0 chr5 105031123 105031436 -47505823 + Lx8 LINE L1 6720 7046 -427 5 1386 2128 136 9 0 chr5 105031803 105032127 -47505132 - ORR1A2 LTR MaLR 0 327 1 5 1386 6861 183 62 66 chr5 105032127 105032815 -47504444 - ORR1A2-int LTR MaLR 0 1963 1305 5 1386 914 163 0 0 chr5 105032815 105032962 -47504297 - B1_Mus2 SINE Alu 0 147 1 5 1386 6861 183 62 66 chr5 105032962 105033931 -47503328 - ORR1A2-int LTR MaLR -659 1304 313 5 1386 1569 205 33 24 chr5 105033940 105034170 -47503089 + RLTR20B3 LTR ERVK 245 483 -94 5 1386 192 40 0 0 chr5 105034170 105034195 -47503064 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1386 1569 205 33 24 chr5 105034195 105034294 -47502965 + RLTR20B3 LTR ERVK 484 576 -1 5 1386 588 174 28 70 chr5 105034601 105034743 -47502516 + B1_Mur4 SINE Alu 15 150 0 6 1386 183 80 0 0 chr5 105034745 105034770 -47502489 + (GGA)n Simple_repeat Simple_repeat 2 26 0 6 1386 983 100 29 0 chr5 105034932 105035072 -47502187 + B1_Mm SINE Alu 1 144 -3 6 1386 3261 67 83 2 chr5 105035326 105035772 -47501487 - RLTR45 LTR ERVK 0 482 1 6 1386 182 62 0 30 chr5 105035871 105035904 -47501355 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 1386 1120 88 0 0 chr5 105035916 105036063 -47501196 - B1_Mus2 SINE Alu 0 147 1 6 1386 1352 181 4 0 chr5 105037591 105037829 -47499430 - ORR1A2 LTR MaLR 0 326 88 5 1386 802 266 28 67 chr5 105038064 105038346 -47498913 + RMER13A LTR ERVK 569 839 -21 6 1386 38045 29 1 6 chr5 105039101 105045285 -47491974 - L1Md_T LINE L1 0 6582 438 6 1386 261 75 0 0 chr5 105045792 105045832 -47491427 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 1386 759 103 155 0 chr5 105045832 105045948 -47491311 - B1_Mm SINE Alu -13 134 1 7 1386 211 28 27 27 chr5 105047042 105047079 -47490180 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 7 1386 736 186 13 1 chr5 105047088 105047234 -47490025 - B2_Mm2 SINE B2 -57 159 2 7 1386 1226 6 41 0 chr5 105047680 105047851 -47489408 + (TTC)n Simple_repeat Simple_repeat 1 178 0 7 1386 1181 101 6 0 chr5 105047870 105048049 -47489210 + (TTC)n Simple_repeat Simple_repeat 1 180 0 7 1386 837 150 6 58 chr5 105048053 105048209 -47489050 - B1_Mus1 SINE Alu 0 148 1 7 1386 1079 307 10 25 chr5 105048244 105048641 -47488618 - Lx6 LINE L1 -11 7449 7059 7 1386 2881 276 27 25 chr5 105048693 105050438 -47486821 - Lx6 LINE L1 -824 6636 4875 7 1386 2547 256 58 91 chr5 105050438 105051438 -47485821 + RLTR25B LTR ERVK 1 967 -61 7 1386 441 0 0 0 chr5 105051438 105051487 -47485772 + (T)n Simple_repeat Simple_repeat 1 49 0 7 1386 343 276 0 0 chr5 105051532 105051655 -47485604 - Lx6 LINE L1 -1021 4859 4737 7 1386 3051 75 0 17 chr5 105051656 105052074 -47485185 + LTRIS2 LTR ERV1 1 411 -153 7 1386 671 253 73 0 chr5 105052121 105052354 -47484905 - Lx6 LINE L1 -1233 4647 4398 7 1386 24230 103 9 5 chr5 105052396 105054674 -47482585 - L1_Mus1 LINE L1 0 6570 4284 7 1386 1354 81 16 0 chr5 105054674 105054860 -47482399 - B2_Mm2 SINE B2 -6 189 1 8 1386 24230 114 15 5 chr5 105054860 105057184 -47480075 - L1_Mus1 LINE L1 -1603 4283 1932 7 1386 2940 27 0 0 chr5 105057184 105057516 -47479743 - IAPEY3_LTR LTR ERVK 0 332 1 8 1386 15292 156 36 47 chr5 105057516 105059064 -47478195 - L1_Mus1 LINE L1 -3949 1937 510 7 1386 600 192 30 8 chr5 105059075 105059206 -47478053 + MurSatRep1 Unknown Unknown 157 290 -1847 8 1386 192 77 0 0 chr5 105059206 105059232 -47478027 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 8 1386 5119 217 22 18 chr5 105059247 105060487 -47476772 - Lx4A LINE L1 -1 7057 5813 8 1386 22 70 0 0 chr5 105060562 105060605 -47476654 + AT_rich Low_complexity Low_complexity 1 43 0 8 1386 1043 95 0 0 chr5 105060757 105060894 -47476365 + B1_Mus1 SINE Alu 2 138 -10 8 1386 225 0 0 0 chr5 105060894 105060919 -47476340 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1386 23 0 0 0 chr5 105061024 105061047 -47476212 + AT_rich Low_complexity Low_complexity 1 23 0 8 1386 7293 80 2 2 chr5 105061140 105062173 -47475086 + L1Md_F2 LINE L1 4553 5585 -298 8 1386 7233 81 4 19 chr5 105062174 105063185 -47474074 + L1Md_F2 LINE L1 5587 6582 0 8 1386 4975 111 32 16 chr5 105063346 105063676 -47473583 - MusHAL1 LINE L1 -627 2085 1768 9 1386 2806 55 6 0 chr5 105063676 105064020 -47473239 - ORR1A0 LTR MaLR 0 346 1 9 1386 4975 111 32 16 chr5 105064020 105064569 -47472690 - MusHAL1 LINE L1 -945 1767 1192 9 1386 6075 231 23 46 chr5 105064571 105066457 -47470802 + MurSatRep1 Unknown Unknown 293 2135 -2 8 1386 286 349 0 0 chr5 105066775 105066927 -47470332 + MMSAT4 Satellite Satellite 17 168 0 9 1386 442 338 32 22 chr5 105066881 105068262 -47468997 + MurSatRep1 Unknown Unknown 1747 2049 -88 9 1386 286 321 7 0 chr5 105068203 105068340 -47468919 + MMSAT4 Satellite Satellite 31 168 0 9 1386 330 302 26 15 chr5 105068401 105068596 -47468663 + MurSatRep1 Unknown Unknown 1852 2048 -89 9 1386 240 257 68 63 chr5 105068568 105068759 -47468500 + MurSatRep1 Unknown Unknown 1852 2043 -94 9 1386 267 54 0 0 chr5 105068984 105069021 -47468238 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1386 401 336 18 18 chr5 105069030 105069248 -47468011 + Lx6 LINE L1 7184 7401 -59 9 1386 998 350 93 36 chr5 105069249 105070132 -47467127 + Lx6 LINE L1 6522 7454 -6 9 1386 265 310 147 78 chr5 105071437 105071598 -47465661 - RMER10A LTR ERVL -8 434 290 9 1386 3161 58 22 212 chr5 105071598 105072230 -47465029 - RLTR1B LTR ERV1 0 512 1 1 1386 265 310 147 78 chr5 105072230 105072464 -47464795 - RMER10A LTR ERVL -153 289 12 9 1386 325 290 132 37 chr5 105072718 105072908 -47464351 - B3 SINE B2 -4 212 5 1 1386 1139 96 0 0 chr5 105073476 105073622 -47463637 + B1_Mus1 SINE Alu 3 148 0 1 1386 5073 123 15 74 chr5 105074684 105076014 -47461245 - L1VL2 LINE L1 -2346 1269 31 1 1386 272 172 0 12 chr5 105076014 105076074 -47461185 - B2_Mm2 SINE B2 -157 59 2 1 1386 24 0 0 0 chr5 105076166 105076190 -47461069 + AT_rich Low_complexity Low_complexity 1 24 0 1 1386 387 357 74 9 chr5 105076750 105077183 -47460076 + Lx8 LINE L1 6720 7180 -293 1 1386 2035 138 28 0 chr5 105077426 105077744 -47459515 - ORR1A2 LTR MaLR 0 327 1 1 1386 8499 182 56 31 chr5 105077744 105079659 -47457600 - ORR1A2-int LTR MaLR 0 1963 1 1 1386 1967 172 3 0 chr5 105079659 105079985 -47457274 - ORR1A2 LTR MaLR 0 327 1 1 1386 612 128 83 0 chr5 105080038 105080147 -47457112 - B2_Mm2 SINE B2 -10 185 68 1 1386 565 99 0 0 chr5 105080426 105080507 -47456752 - B2_Mm2 SINE B2 -112 83 3 1 1386 266 309 24 0 chr5 105080834 105080918 -47456341 + ID_B1 SINE B4 135 220 -4 1 1386 1765 175 58 63 chr5 105081005 105081223 -47456036 - MTC LTR MaLR -8 413 200 1 1386 1142 138 0 16 chr5 105081223 105081415 -47455844 - B2_Mm2 SINE B2 -3 192 4 1 1386 1765 175 58 63 chr5 105081415 105081611 -47455648 - MTC LTR MaLR -222 199 1 1 1386 1477 238 20 80 chr5 105081855 105082257 -47455002 + RLTR1B LTR ERV1 135 512 0 1 1386 824 96 14 88 chr5 105082355 105082503 -47454756 - B1_Mm SINE Alu 0 147 11 1 1386 278 211 73 96 chr5 105082396 105082532 -47454727 - RLTR25B LTR ERVK -524 504 372 1 1386 1208 214 48 19 chr5 105082977 105083291 -47453968 + ORR1A3 LTR MaLR 3 325 -1 1 1386 195 42 0 0 chr5 105083649 105083673 -47453586 + (TCC)n Simple_repeat Simple_repeat 3 26 0 1 1386 7749 45 1 2 chr5 105083706 105085145 -47452114 - L1Md_F3 LINE L1 -2 6582 5145 1 1386 333 314 47 55 chr5 105085779 105086032 -47451227 - Lx8 LINE L1 -51 7422 7172 1 1386 229 267 15 15 chr5 105086435 105086572 -47450687 + (TATATG)n Simple_repeat Simple_repeat 4 140 0 1 1386 1216 201 21 28 chr5 105086941 105087223 -47450036 + RLTR22_Mur LTR ERVK 1 280 -1568 1 1386 957 87 0 14 chr5 105087224 105087364 -47449895 - B1_Mm SINE Alu 0 147 10 1 1386 2445 160 11 2 chr5 105087366 105087817 -47449442 + RLTR22_Mur LTR ERVK 261 715 -1133 1 1386 387 0 0 0 chr5 105088123 105088166 -47449093 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1 1386 627 181 0 0 chr5 105088188 105088343 -47448916 + (TA)n Simple_repeat Simple_repeat 1 155 0 1 1386 1189 35 0 0 chr5 105088645 105088786 -47448473 + B1_Mus1 SINE Alu 1 141 -7 1 1386 468 51 0 0 chr5 105088789 105088848 -47448411 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1 1386 1655 214 27 94 chr5 105089192 105089850 -47447409 + RLTR31A_Mm LTR ERVK 1 555 -2 1 1386 206 118 0 0 chr5 105089879 105089913 -47447346 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1386 1331 74 10 21 chr5 105089922 105089954 -47447305 - B2_Mm1a SINE B2 -2 191 161 1 1386 239 71 24 0 chr5 105089954 105089996 -47447263 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1386 1331 74 10 21 chr5 105089996 105090155 -47447104 - B2_Mm1a SINE B2 -33 160 2 1 1386 969 115 70 0 chr5 105090159 105090316 -47446943 - B2_Mm1t SINE B2 -22 171 4 1 1386 953 109 23 11 chr5 105090317 105090493 -47446766 - L1_Mus3 LINE L1 -23 6615 6438 1 1386 878 278 22 90 chr5 105090974 105091286 -47445973 + RMER13A LTR ERVK 570 860 0 1 1386 38012 29 1 6 chr5 105092027 105098211 -47439048 - L1Md_T LINE L1 0 6582 438 1 1386 261 75 0 0 chr5 105098718 105098758 -47438501 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1386 759 103 155 0 chr5 105098758 105098874 -47438385 - B1_Mm SINE Alu -13 134 1 1 1386 211 28 27 27 chr5 105099968 105100005 -47437254 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 1 1386 736 186 13 1 chr5 105100014 105100160 -47437099 - B2_Mm2 SINE B2 -57 159 2 1 1386 1205 12 41 0 chr5 105100606 105100777 -47436482 + (TTC)n Simple_repeat Simple_repeat 1 178 0 1 1386 1160 106 6 0 chr5 105100796 105100975 -47436284 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1386 837 150 6 58 chr5 105100979 105101135 -47436124 - B1_Mus1 SINE Alu 0 148 1 1 1386 1079 307 10 25 chr5 105101170 105101567 -47435692 - Lx6 LINE L1 -11 7449 7059 1 1386 2881 276 27 25 chr5 105101619 105103364 -47433895 - Lx6 LINE L1 -824 6636 4875 1 1386 2547 256 58 91 chr5 105103364 105104364 -47432895 + RLTR25B LTR ERVK 1 967 -61 1 1386 441 0 0 0 chr5 105104364 105104413 -47432846 + (T)n Simple_repeat Simple_repeat 1 49 0 1 1386 343 276 0 0 chr5 105104458 105104581 -47432678 - Lx6 LINE L1 -1021 4859 4737 1 1386 3075 73 0 17 chr5 105104582 105105000 -47432259 + LTRIS2 LTR ERV1 1 411 -153 1 1386 671 253 73 0 chr5 105105047 105105280 -47431979 - Lx6 LINE L1 -1233 4647 4398 1 1386 28528 103 9 6 chr5 105105322 105107600 -47429659 - L1_Mus1 LINE L1 0 6570 4284 1 1386 1354 81 16 0 chr5 105107600 105107786 -47429473 - B2_Mm2 SINE B2 -6 189 1 1 1386 28528 113 14 6 chr5 105107786 105110110 -47427149 - L1_Mus1 LINE L1 -1603 4283 1938 1 1386 2940 27 0 0 chr5 105110110 105110442 -47426817 - IAPEY3_LTR LTR ERVK 0 332 1 1 1386 28528 154 34 47 chr5 105110442 105111990 -47425269 - L1_Mus1 LINE L1 -3949 1937 510 1 1386 655 192 30 8 chr5 105112001 105112132 -47425127 + MurSatRep1 Unknown Unknown 157 290 -1847 1 1386 192 77 0 0 chr5 105112132 105112158 -47425101 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 1 1386 5562 217 22 18 chr5 105112173 105113413 -47423846 - Lx4A LINE L1 -1 7057 5813 1 1386 22 70 0 0 chr5 105113488 105113531 -47423728 + AT_rich Low_complexity Low_complexity 1 43 0 1 1386 1103 95 0 0 chr5 105113683 105113820 -47423439 + B1_Mus1 SINE Alu 2 138 -10 1 1386 225 0 0 0 chr5 105113820 105113845 -47423414 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1386 23 0 0 0 chr5 105113950 105113973 -47423286 + AT_rich Low_complexity Low_complexity 1 23 0 1 1386 7834 80 2 2 chr5 105114066 105115099 -47422160 + L1Md_F2 LINE L1 4553 5585 -298 1 1386 7764 81 4 17 chr5 105115100 105116109 -47421150 + L1Md_F2 LINE L1 5587 6582 0 1 1386 5358 112 32 16 chr5 105116270 105116600 -47420659 - MusHAL1 LINE L1 -627 2085 1768 1 1386 2989 55 6 0 chr5 105116600 105116944 -47420315 - ORR1A0 LTR MaLR 0 346 1 1 1386 5358 112 32 16 chr5 105116944 105117493 -47419766 - MusHAL1 LINE L1 -945 1767 1192 1 1386 6871 231 23 46 chr5 105117495 105119381 -47417878 + MurSatRep1 Unknown Unknown 293 2135 -2 1 1386 411 330 27 25 chr5 105119676 105119699 -47417560 + MurSatRep1 Unknown Unknown 1747 1770 -367 1 173 345 349 0 0 chr5 105119699 105119851 -47417408 + MMSAT4 Satellite Satellite 17 168 0 1 1387 411 330 27 25 chr5 105119851 105120108 -47417151 + MurSatRep1 Unknown Unknown 1771 2049 -88 1 1387 506 317 29 26 chr5 105120122 105120444 -47416815 + MurSatRep1 Unknown Unknown 1748 2049 -88 1 1387 566 333 61 29 chr5 105120428 105121102 -47416157 + MurSatRep1 Unknown Unknown 1691 2137 0 1 1387 369 319 36 25 chr5 105121073 105121269 -47415990 + MurSatRep1 Unknown Unknown 1852 2049 -88 1 1387 418 303 25 15 chr5 105121323 105121521 -47415738 + MurSatRep1 Unknown Unknown 1850 2049 -88 1 1387 325 302 75 50 chr5 105121492 105121771 -47415488 + MurSatRep1 Unknown Unknown 1852 2137 0 1 1387 267 54 0 0 chr5 105121908 105121945 -47415314 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1387 452 333 23 23 chr5 105121954 105122172 -47415087 + Lx6 LINE L1 7184 7401 -59 1 1387 425 322 20 0 chr5 105122173 105122319 -47414940 + Lx6 LINE L1 6522 6670 -790 1 1387 2942 16 2 231 chr5 105122319 105122825 -47414434 + RLTR10 LTR ERVK 1 390 0 1 1387 6197 45 64 136 chr5 105122825 105123861 -47413398 + RLTR10-int LTR ERVK 1 991 -996 1 1387 756 320 64 10 chr5 105123918 105124310 -47412949 + RLTR10-int LTR ERVK 738 1150 -5392 1 1387 8877 21 1 0 chr5 105124392 105125386 -47411873 + RLTR10-int LTR ERVK 990 1984 -3 1 1387 2800 23 2 233 chr5 105125388 105125890 -47411369 + RLTR10 LTR ERVK 1 386 -4 1 1387 868 358 94 27 chr5 105126001 105126639 -47410620 + Lx6 LINE L1 6774 7454 -6 1 1387 245 310 147 78 chr5 105127944 105128105 -47409154 - RMER10A LTR ERVL -8 434 290 1 1387 3420 58 22 212 chr5 105128105 105128737 -47408522 - RLTR1B LTR ERV1 0 512 1 1 1387 245 310 147 78 chr5 105128737 105128971 -47408288 - RMER10A LTR ERVL -153 289 12 1 1387 392 303 121 26 chr5 105129225 105129415 -47407844 - B3 SINE B2 -4 212 5 1 1387 1181 95 0 33 chr5 105129975 105130128 -47407131 + B1_Mus1 SINE Alu 1 148 0 1 1387 381 22 0 0 chr5 105130342 105130388 -47406871 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1387 24 0 0 0 chr5 105130486 105130510 -47406749 + AT_rich Low_complexity Low_complexity 1 24 0 1 1387 22 0 0 0 chr5 105130628 105130650 -47406609 + AT_rich Low_complexity Low_complexity 1 22 0 1 1387 5085 44 25 13 chr5 105132388 105133058 -47404201 + ORR1A1-int LTR MaLR 1115 1792 0 1 1387 2690 61 58 9 chr5 105133058 105133388 -47403871 + ORR1A1 LTR MaLR 1 346 0 1 1387 530 95 107 0 chr5 105133804 105133888 -47403371 - B2_Mm2 SINE B2 -77 118 26 1 1387 24 85 0 0 chr5 105133888 105133947 -47403312 + AT_rich Low_complexity Low_complexity 1 59 0 1 1387 12337 114 15 32 chr5 105133996 105134267 -47402992 - MusHAL1 LINE L1 -632 2080 1839 1 1387 996 132 14 0 chr5 105134267 105134411 -47402848 - B1_Mus2 SINE Alu 0 147 2 1 1387 12337 114 15 32 chr5 105134411 105136197 -47401062 - MusHAL1 LINE L1 -874 1838 59 1 1387 513 344 95 48 chr5 105136399 105137046 -47400213 + Lx8 LINE L1 6760 7449 -24 1 1387 2319 130 9 0 chr5 105137046 105137370 -47399889 - ORR1A2 LTR MaLR 0 327 1 1 1387 9276 187 50 19 chr5 105137370 105139274 -47397985 - ORR1A2-int LTR MaLR 0 1963 1 1 1387 2038 162 19 0 chr5 105139275 105139595 -47397664 - ORR1A2 LTR MaLR -1 326 1 1 1387 513 344 95 48 chr5 105139595 105139626 -47397633 + Lx8 LINE L1 7450 7472 -1 1 1387 593 110 101 0 chr5 105139648 105139757 -47397502 - B2_Mm2 SINE B2 -8 187 68 1 1387 846 90 0 0 chr5 105139891 105140002 -47397257 - B2_Mm2 SINE B2 -82 113 3 1 1387 872 214 114 0 chr5 105140002 105140192 -47397067 - MTC LTR MaLR -208 213 1 1 1387 992 67 15 0 chr5 105140456 105140591 -47396668 - B1_Mm SINE Alu 0 147 11 1 1387 1411 187 68 13 chr5 105141392 105141701 -47395558 + ORR1A4 LTR MaLR 3 328 -1 1 1387 24 32 0 0 chr5 105142278 105142309 -47394950 + AT_rich Low_complexity Low_complexity 1 31 0 1 1387 27 29 0 0 chr5 105142482 105142516 -47394743 + AT_rich Low_complexity Low_complexity 1 34 0 1 1387 404 111 48 0 chr5 105142620 105142683 -47394576 + B1_Mur3 SINE Alu 3 68 -81 1 1387 2919 106 30 11 chr5 105143875 105144368 -47392891 - RLTR13C2 LTR ERVK -11 811 325 1 1387 994 124 0 20 chr5 105144368 105144516 -47392743 - B1_Mm SINE Alu -1 146 2 1 1387 1958 251 52 79 chr5 105144516 105144642 -47392617 - RLTR13C2 LTR ERVK -470 459 294 1 1387 2104 241 4 9 chr5 105144642 105145102 -47392157 - MuRRS4-int LTR ERV1 -2553 2510 2053 1 1387 4691 214 37 62 chr5 105145091 105146583 -47390676 - MuRRS4-int LTR ERV1 -2839 1851 367 1 1387 285 51 0 0 chr5 105146583 105146622 -47390637 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1387 4691 182 18 23 chr5 105146622 105147027 -47390232 - MuRRS4-int LTR ERV1 -4697 366 2 1 1387 2559 102 6 3 chr5 105147032 105147397 -47389862 - LTRIS_Mus LTR ERV1 0 587 222 1 1387 2273 212 34 43 chr5 105148621 105149063 -47388196 + RLTR20B3 LTR ERVK 21 471 -106 1 1387 363 23 0 0 chr5 105149063 105149107 -47388152 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1387 423 0 0 0 chr5 105149107 105149153 -47388106 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1387 2273 212 34 43 chr5 105149153 105149271 -47387988 + RLTR20B3 LTR ERVK 472 576 -1 1 1387 516 186 36 65 chr5 105149572 105149710 -47387549 + B1_Mur4 SINE Alu 15 148 -2 1 1387 222 118 0 0 chr5 105149711 105149745 -47387514 + (GGAGAA)n Simple_repeat Simple_repeat 5 38 0 1 1387 22 0 0 0 chr5 105149756 105149778 -47387481 + AT_rich Low_complexity Low_complexity 1 22 0 2 1387 1141 102 0 0 chr5 105149782 105149929 -47387330 - B1_Mm SINE Alu 0 147 1 2 1387 1118 68 15 0 chr5 105150089 105150222 -47387037 + B1_Mus1 SINE Alu 1 135 -13 2 1387 270 0 0 0 chr5 105150222 105150252 -47387007 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2 1387 1341 181 4 0 chr5 105151033 105151271 -47385988 - ORR1A3 LTR MaLR 0 326 88 2 1387 830 282 34 61 chr5 105151506 105151801 -47385458 + RMER13A LTR ERVK 569 855 -5 2 1387 257 149 29 15 chr5 105153356 105153424 -47383835 + T-rich Low_complexity Low_complexity 2 70 0 2 1387 356 45 29 29 chr5 105154095 105154164 -47383095 + (TTTA)n Simple_repeat Simple_repeat 4 72 0 2 1387 719 191 12 3 chr5 105154173 105154319 -47382940 - B2_Mm2 SINE B2 -61 155 2 2 1387 261 0 0 0 chr5 105154578 105154607 -47382652 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1387 237 286 0 0 chr5 105154707 105154770 -47382489 + CT-rich Low_complexity Low_complexity 2 64 0 2 1387 979 138 7 0 chr5 105154778 105154923 -47382336 - B1_Mus1 SINE Alu -2 146 1 2 1387 934 298 22 52 chr5 105154956 105155324 -47381935 - Lx6 LINE L1 -9 7451 7095 2 1387 2681 302 38 45 chr5 105155301 105155987 -47381272 - Lx6 LINE L1 -966 6494 5794 2 1387 1315 99 16 16 chr5 105155987 105156172 -47381087 - B2_Mm1a SINE B2 -8 185 1 2 1387 2681 274 31 37 chr5 105156172 105157090 -47380169 - Lx6 LINE L1 -81 5799 4875 2 1387 3252 236 109 67 chr5 105157090 105157953 -47379306 + RLTR25A LTR ERVK 1 882 -221 2 1387 324 0 0 0 chr5 105157953 105157989 -47379270 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1387 291 28 0 0 chr5 105157989 105158024 -47379235 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1387 3252 236 109 67 chr5 105158024 105158218 -47379041 + RLTR25A LTR ERVK 883 1102 -1 2 1387 1382 236 208 57 chr5 105158220 105158993 -47378266 - Lx6 LINE L1 -1002 4878 3989 2 1387 258 363 0 21 chr5 105159037 105159130 -47378129 - PB1D9 SINE Alu -29 91 1 2 1387 630 49 0 0 chr5 105159158 105159240 -47378019 + (TC)n Simple_repeat Simple_repeat 1 82 0 2 1387 415 330 44 24 chr5 105159260 105159465 -47377794 - B3 SINE B2 -7 209 1 2 1387 1746 253 78 77 chr5 105159562 105160175 -47377084 - RLTR18 LTR ERVK 0 616 3 2 1387 3687 75 0 0 chr5 105160378 105160820 -47376439 - L1_Mus1 LINE L1 0 6567 6126 2 1387 1120 97 7 0 chr5 105160828 105160972 -47376287 - B1_Mm SINE Alu 0 147 3 2 1387 22 0 0 0 chr5 105161058 105161080 -47376179 + AT_rich Low_complexity Low_complexity 1 22 0 2 1387 302 265 98 69 chr5 105161176 105161350 -47375909 + MT2A LTR ERVL 336 514 -19 2 1387 204 158 0 0 chr5 105161656 105161694 -47375565 + T-rich Low_complexity Low_complexity 1 38 0 2 1387 950 170 0 0 chr5 105161695 105161842 -47375417 - B1_Mus1 SINE Alu 0 148 2 2 1387 4316 193 17 5 chr5 105161842 105162718 -47374541 - L1_Mur1 LINE L1 -770 5116 4230 2 1387 385 247 50 71 chr5 105162739 105162785 -47374474 - Lx5 LINE L1 -608 5974 5929 2 1387 2348 161 85 2 chr5 105162785 105163220 -47374039 - Lx3C LINE L1 -2 6974 6504 2 1387 746 244 18 31 chr5 105163220 105163457 -47373802 - Lx5 LINE L1 -654 5928 5697 2 1387 515 234 22 7 chr5 105163466 105163604 -47373655 + MurSatRep1 Unknown Unknown 61 200 -1937 2 1387 1187 253 27 13 chr5 105163604 105163905 -47373354 - Lx4A LINE L1 -174 6884 6580 2 1387 2415 109 134 56 chr5 105163905 105164352 -47372907 - RLTR45 LTR ERVK 0 482 1 2 1387 7640 37 26 2 chr5 105164352 105165243 -47372016 - RLTR45-int LTR ERVK 0 7244 6333 2 1387 2858 71 8 0 chr5 105165243 105165621 -47371638 - RLTR13B1 LTR ERVK -385 508 128 2 1387 1730 104 0 0 chr5 105165621 105165851 -47371408 - RLTR45-int LTR ERVK -50 5758 5529 2 1387 8113 39 26 7 chr5 105165864 105166854 -47370405 - RLTR45-int LTR ERVK -1172 6072 5064 2 1387 17342 40 18 11 chr5 105166846 105169168 -47368091 - RLTR45-int LTR ERVK -3258 3986 1649 2 1387 724 67 0 6 chr5 105169245 105169357 -47367902 - RLTR13B1 LTR ERVK -277 652 435 2 1387 624 311 43 56 chr5 105169369 105169852 -47367407 - RNERVK23-int LTR ERVK -612 7605 7129 2 1387 4614 78 78 24 chr5 105169944 105170650 -47366609 - RLTR45-int LTR ERVK -5599 1645 902 2 1387 1727 41 0 9 chr5 105170757 105170978 -47366281 - RLTR45-int LTR ERVK -6334 910 692 2 1387 4789 62 29 22 chr5 105171297 105171984 -47365275 - RLTR45-int LTR ERVK -6552 692 1 2 1387 2752 115 26 51 chr5 105171984 105172478 -47364781 - RLTR45 LTR ERVK 0 482 1 2 1387 2548 180 29 108 chr5 105172478 105172858 -47364401 - Lx4A LINE L1 -473 6585 6234 2 1387 1033 103 7 0 chr5 105172858 105173003 -47364256 - B1_Mm SINE Alu -1 146 1 2 1387 2548 180 29 108 chr5 105173003 105173111 -47364148 - Lx4A LINE L1 -825 6233 6153 2 1387 420 37 0 0 chr5 105173111 105173165 -47364094 + (TTTTG)n Simple_repeat Simple_repeat 1 54 0 2 1387 978 127 0 0 chr5 105173165 105173299 -47363960 - B1_Mm SINE Alu -13 134 1 2 1387 2548 180 29 108 chr5 105173299 105173542 -47363717 - Lx4A LINE L1 -906 6152 5911 2 1387 308 206 0 0 chr5 105173543 105173611 -47363648 - Lx4A LINE L1 -421 5456 5389 2 1387 339 183 14 0 chr5 105173624 105173695 -47363564 + L1_Mur2 LINE L1 3876 3947 -1930 2 1387 2095 188 9 4 chr5 105173695 105174145 -47363114 + L1_Mur2 LINE L1 4092 4543 -1334 2 1387 22 70 0 0 chr5 105174326 105174369 -47362890 + AT_rich Low_complexity Low_complexity 1 43 0 2 1387 22 56 0 0 chr5 105174524 105174560 -47362699 + AT_rich Low_complexity Low_complexity 1 36 0 2 1387 1033 77 21 14 chr5 105174717 105174862 -47362397 + B1_Mus2 SINE Alu 2 147 0 2 1387 195 69 0 0 chr5 105174865 105174894 -47362365 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1387 4922 100 80 1 chr5 105175055 105175884 -47361375 - MusHAL1 LINE L1 -627 2085 1192 2 1387 5802 233 25 49 chr5 105175886 105176890 -47360369 + MurSatRep1 Unknown Unknown 293 1281 -856 2 1387 2020 39 35 0 chr5 105176890 105177147 -47360112 - L1Md_F2 LINE L1 -3 6579 6314 2 1387 5802 233 25 49 chr5 105177147 105178031 -47359228 + MurSatRep1 Unknown Unknown 1282 2135 -2 2 1387 431 319 31 31 chr5 105178373 105178759 -47358500 + MurSatRep1 Unknown Unknown 1747 2049 -88 2 1387 412 322 29 26 chr5 105178730 105179347 -47357912 + MurSatRep1 Unknown Unknown 1747 2049 -88 2 1387 308 321 7 7 chr5 105179288 105179426 -47357833 + MMSAT4 Satellite Satellite 31 168 0 2 1387 421 292 30 25 chr5 105179402 105179599 -47357660 + MurSatRep1 Unknown Unknown 1852 2049 -88 2 1387 419 320 31 29 chr5 105179605 105180103 -47357156 + MurSatRep1 Unknown Unknown 1747 2049 -88 2 1387 273 340 0 0 chr5 105180041 105180182 -47357077 + MMSAT4 Satellite Satellite 28 168 0 2 1387 859 132 59 7 chr5 105181551 105181703 -47355556 - B2_Mm2 SINE B2 -10 185 26 2 1387 10476 119 47 35 chr5 105181811 105182070 -47355189 - L1VL2 LINE L1 -632 2983 2756 2 1387 1040 124 0 6 chr5 105182070 105182249 -47355010 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 2 1387 885 89 0 0 chr5 105182249 105182373 -47354886 + (TTTC)n Simple_repeat Simple_repeat 3 126 0 2 1387 939 138 14 0 chr5 105182375 105182513 -47354746 - B1_Mus2 SINE Alu -6 141 2 2 1387 10476 119 47 35 chr5 105182513 105183490 -47353769 - L1VL2 LINE L1 -860 2755 1760 2 1387 2786 49 6 0 chr5 105183490 105183834 -47353425 - ORR1A1 LTR MaLR 0 346 1 2 1387 10476 129 33 71 chr5 105183834 105185619 -47351640 - L1VL2 LINE L1 -1856 1759 21 2 1387 272 132 0 0 chr5 105185630 105185668 -47351591 - B2_Mm2 SINE B2 -156 39 2 2 1387 27 0 0 0 chr5 105185777 105185804 -47351455 + AT_rich Low_complexity Low_complexity 1 27 0 2 1387 370 360 72 31 chr5 105186348 105186832 -47350427 + Lx8 LINE L1 6720 7223 -250 2 1387 2068 142 9 0 chr5 105187032 105187356 -47349903 - ORR1A2 LTR MaLR 0 327 1 2 1387 8065 175 83 32 chr5 105187356 105189224 -47348035 - ORR1A2-int LTR MaLR 0 1963 1 2 1387 1854 186 3 0 chr5 105189232 105189549 -47347710 - ORR1A2 LTR MaLR -9 318 1 2 1387 21 0 0 0 chr5 105189560 105189581 -47347678 + AT_rich Low_complexity Low_complexity 1 21 0 2 1387 625 119 45 18 chr5 105189597 105189708 -47347551 - B2_Mm2 SINE B2 -14 181 68 2 1387 389 143 0 0 chr5 105189996 105190059 -47347200 - B2_Mm2 SINE B2 -115 80 18 2 1387 1802 169 55 62 chr5 105190545 105190763 -47346496 - MTC LTR MaLR -8 413 214 2 1387 1211 122 0 16 chr5 105190763 105190955 -47346304 - B2_Mm2 SINE B2 -3 192 4 2 1387 1802 169 55 62 chr5 105190955 105191152 -47346107 - MTC LTR MaLR -208 213 1 2 1387 956 57 8 0 chr5 105191410 105191533 -47345726 - B1_Mm SINE Alu 0 147 24 2 1387 693 147 8 8 chr5 105191533 105191663 -47345596 + RLTR22_Mur LTR ERVK 586 715 -1133 2 1387 1458 231 18 149 chr5 105191854 105192412 -47344847 + RLTR31A_Mm LTR ERVK 98 582 -2 2 1387 1139 107 18 97 chr5 105192472 105192511 -47344748 - L1_Mus3 LINE L1 -1 6637 6612 2 1387 843 178 101 0 chr5 105192511 105192680 -47344579 - B2_Mm1t SINE B2 -7 186 1 2 1387 1139 107 18 97 chr5 105192680 105192715 -47344544 - L1_Mus3 LINE L1 -27 6611 6582 2 1387 2640 82 141 139 chr5 105192715 105193226 -47344033 + RLTR1B LTR ERV1 1 512 0 2 1387 1139 107 18 97 chr5 105193226 105193377 -47343882 - L1_Mus3 LINE L1 -57 6581 6429 2 1387 355 111 44 73 chr5 105193761 105193829 -47343430 + B1_Mur3 SINE Alu 3 68 -81 2 1387 21 0 0 0 chr5 105193880 105193901 -47343358 + AT_rich Low_complexity Low_complexity 1 21 0 2 1387 22 0 0 0 chr5 105195215 105195237 -47342022 + AT_rich Low_complexity Low_complexity 1 22 0 2 1387 306 221 41 66 chr5 105195916 105196037 -47341222 + B1_Mur4 SINE Alu 33 150 0 2 1387 1017 123 7 0 chr5 105196220 105196366 -47340893 + B1_Mus2 SINE Alu 1 147 0 2 1387 462 114 0 0 chr5 105196723 105196793 -47340466 + (T)n Simple_repeat Simple_repeat 1 70 0 2 1387 1033 60 0 0 chr5 105196793 105196927 -47340332 - B1_Mm SINE Alu 0 147 14 2 1387 255 200 0 0 chr5 105197189 105197239 -47340020 + MTC LTR MaLR 1 50 -371 2 1387 1369 154 21 0 chr5 105198575 105198809 -47338450 - ORR1A3 LTR MaLR 0 326 88 2 1387 793 275 40 73 chr5 105199044 105199346 -47337913 + RMER13A LTR ERVK 569 860 0 2 1387 243 170 38 0 chr5 105199876 105199929 -47337330 - RMER4A LTR ERVK -401 65 11 2 1387 180 0 0 0 chr5 105200932 105200952 -47336307 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1387 1261 96 21 0 chr5 105201068 105201256 -47336003 + B2_Mm2 SINE B2 1 192 -3 2 1387 850 191 17 23 chr5 105201837 105202014 -47335245 - B2_Mm2 SINE B2 -18 177 2 2 1387 210 242 0 0 chr5 105202286 105202352 -47334907 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1387 220 348 9 9 chr5 105202428 105202527 -47334732 + CT-rich Low_complexity Low_complexity 21 119 0 2 1387 271 288 0 0 chr5 105202445 105202525 -47334734 + T-rich Low_complexity Low_complexity 1 80 0 2 1387 908 126 35 7 chr5 105202527 105202671 -47334588 - B1_Mus1 SINE Alu 0 148 1 2 1387 220 348 9 9 chr5 105202671 105202687 -47334572 + polypyrimidine Low_complexity Low_complexity 5 20 0 2 1387 1120 277 17 47 chr5 105202705 105203110 -47334149 - Lx6 LINE L1 -9 7451 7059 2 1387 968 300 65 15 chr5 105203162 105203642 -47333617 - Lx6 LINE L1 -824 6636 6133 2 1387 236 250 14 0 chr5 105203644 105203716 -47333543 + Lx6 LINE L1 7083 7155 -305 2 1387 551 72 0 12 chr5 105203716 105203800 -47333459 - RLTR45-int LTR ERVK -2326 4918 4836 2 1387 6272 76 2 22 chr5 105203800 105204788 -47332471 + L1Md_Gf LINE L1 278 1347 -5313 2 1387 264 212 73 29 chr5 105206917 105206985 -47330274 + ID4 SINE ID 12 82 -1 2 1387 180 0 0 0 chr5 105207823 105207843 -47329416 + (TCCC)n Simple_repeat Simple_repeat 4 23 0 2 1387 22 0 0 0 chr5 105208413 105208435 -47328824 + AT_rich Low_complexity Low_complexity 1 22 0 2 1387 30102 69 3 6 chr5 105208435 105212688 -47324571 + L1Md_F2 LINE L1 1346 5586 -297 2 1387 8127 46 4 0 chr5 105212688 105213680 -47323579 + L1Md_F2 LINE L1 5587 6582 0 2 1387 23671 98 22 36 chr5 105213680 105213765 -47323494 - ETnERV3-int LTR ERVK -1712 4096 4010 3 1387 276 30 0 0 chr5 105213765 105213798 -47323461 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 3 1387 23671 128 26 36 chr5 105213798 105218249 -47319010 - ETnERV3-int LTR ERVK -1799 4009 188 3 1387 1111 109 5 27 chr5 105218665 105218853 -47318406 - ETnERV3-int LTR ERVK -5622 186 3 3 1387 6935 35 0 21 chr5 105218855 105219695 -47317564 - RLTR13B2 LTR ERVK 0 822 1 3 1387 1274 164 8 45 chr5 105219789 105220031 -47317228 + ORR1A3 LTR MaLR 88 320 -6 3 1387 444 349 35 42 chr5 105220456 105220767 -47316492 + Lx7 LINE L1 6178 6486 -1210 3 1387 21 82 0 0 chr5 105220983 105221032 -47316227 + AT_rich Low_complexity Low_complexity 1 49 0 3 1387 328 258 165 57 chr5 105221271 105221604 -47315655 - Lx8 LINE L1 -244 7229 6861 3 1387 534 231 77 119 chr5 105221631 105221941 -47315318 + Lx6 LINE L1 4202 4498 -1382 3 1387 2314 222 12 61 chr5 105221941 105222511 -47314748 - RLTR25B LTR ERVK -475 553 12 3 1387 2935 285 31 33 chr5 105222515 105224266 -47312993 + Lx6 LINE L1 4870 6636 -824 3 1387 1142 281 43 65 chr5 105224262 105224726 -47312533 + Lx6 LINE L1 6996 7449 -11 3 1387 405 58 0 0 chr5 105224936 105224988 -47312271 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1387 234 0 0 0 chr5 105225098 105225124 -47312135 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1387 880 146 47 47 chr5 105225269 105225441 -47311818 + B2_Mm2 SINE B2 5 176 -19 3 1387 23 33 0 0 chr5 105225839 105225869 -47311390 + AT_rich Low_complexity Low_complexity 1 30 0 3 1387 293 126 406 10 chr5 105225880 105225976 -47311283 - B2_Mm2 SINE B2 -11 184 51 3 1387 1301 90 11 0 chr5 105225991 105226169 -47311090 - B2_Mm1t SINE B2 -13 180 1 3 1387 752 264 26 75 chr5 105227984 105228291 -47308968 - RMER13A LTR ERVK 0 860 569 3 1387 217 158 0 50 chr5 105228896 105228956 -47308303 + T-rich Low_complexity Low_complexity 4 60 0 3 1387 1091 115 0 0 chr5 105229407 105229555 -47307704 + B1_Mus1 SINE Alu 1 148 0 3 1387 1205 166 9 0 chr5 105229642 105229865 -47307394 + ORR1A3 LTR MaLR 86 310 -16 3 1387 198 0 0 0 chr5 105229883 105229905 -47307354 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1387 1273 91 31 36 chr5 105229935 105230129 -47307130 + B2_Mm2 SINE B2 2 194 -1 3 1387 363 96 0 0 chr5 105230150 105230202 -47307057 + (GGGGA)n Simple_repeat Simple_repeat 4 55 0 3 1387 1002 111 0 0 chr5 105230443 105230587 -47306672 - B1_Mus2 SINE Alu 0 147 4 3 1387 843 326 16 35 chr5 105230729 105231044 -47306215 + Lx7 LINE L1 6178 6486 -1210 3 1387 42 20 0 0 chr5 105231260 105231309 -47305950 + AT_rich Low_complexity Low_complexity 1 49 0 3 1387 604 299 74 37 chr5 105231634 105231957 -47305302 - Lx8 LINE L1 -359 7114 6780 3 1387 610 127 34 18 chr5 105232128 105232291 -47304968 + Lx3_Mus LINE L1 6806 7009 0 3 1387 537 16 0 0 chr5 105233747 105233809 -47303450 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 1387 189 0 0 0 chr5 105233838 105233859 -47303400 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1387 234 136 0 0 chr5 105233859 105233903 -47303356 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1387 273 133 22 0 chr5 105234695 105234740 -47302519 + RNERVK23-int LTR ERVK 6811 6856 -1361 3 1387 381 270 45 30 chr5 105235991 105236191 -47301068 - RLTR6-int LTR ERV1 -6310 1468 1159 3 1387 297 338 47 43 chr5 105236767 105236999 -47300260 - RLTR6-int LTR ERV1 -6741 815 583 3 1387 546 336 69 52 chr5 105238382 105238671 -47298588 - Lx6 LINE L1 -193 7267 6974 3 1387 2830 50 7 103 chr5 105238672 105239100 -47298159 + RLTR10 LTR ERVK 1 387 -3 3 1387 15458 38 13 65 chr5 105239100 105241170 -47296089 + RLTR10-int LTR ERVK 17 1986 -1 3 1387 2816 52 7 103 chr5 105241170 105241598 -47295661 + RLTR10 LTR ERVK 1 387 -3 3 1387 635 344 41 24 chr5 105241672 105242011 -47295248 - Lx6 LINE L1 -580 6880 6536 3 1387 366 375 13 22 chr5 105242026 105242255 -47295004 - Lx6 LINE L1 -59 7401 7175 3 1387 363 317 58 54 chr5 105242299 105242681 -47294578 - MurSatRep1 Unknown Unknown -70 2067 1747 3 1387 403 330 15 10 chr5 105242652 105242851 -47294408 - MurSatRep1 Unknown Unknown -88 2049 1850 3 1387 568 332 34 30 chr5 105242949 105244232 -47293027 - MurSatRep1 Unknown Unknown 0 2137 1738 3 1387 6666 230 27 43 chr5 105244555 105245124 -47292135 - MurSatRep1 Unknown Unknown -2 2135 1581 3 1387 219 69 0 0 chr5 105245124 105245153 -47292106 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 3 1387 6666 230 27 43 chr5 105245153 105246456 -47290803 - MurSatRep1 Unknown Unknown -557 1580 293 3 1387 5207 102 78 1 chr5 105246458 105247289 -47289970 + MusHAL1 LINE L1 1192 2086 -626 3 1387 1024 71 35 0 chr5 105247428 105247569 -47289690 - B1_Mm SINE Alu 0 147 2 3 1387 22 56 0 0 chr5 105247720 105247756 -47289503 + AT_rich Low_complexity Low_complexity 1 36 0 3 1387 2154 194 11 2 chr5 105248135 105248575 -47288684 - L1_Mur2 LINE L1 -1342 4535 4092 3 1387 388 209 11 23 chr5 105248549 105248664 -47288595 - L1_Mur2 LINE L1 -1910 3976 3867 3 1387 6426 209 22 30 chr5 105248659 105249407 -47287852 + Lx4A LINE L1 5389 6149 -909 3 1387 1000 117 0 0 chr5 105249407 105249544 -47287715 + B1_Mm SINE Alu 1 137 -10 3 1387 243 79 0 0 chr5 105249544 105249582 -47287677 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 1387 6426 209 27 39 chr5 105249582 105249671 -47287588 + Lx4A LINE L1 6150 6226 -832 3 1387 970 109 0 0 chr5 105249671 105249808 -47287451 + B1_Mm SINE Alu 2 138 -9 3 1387 180 0 0 0 chr5 105249808 105249828 -47287431 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1387 6426 209 27 39 chr5 105249828 105250669 -47286590 + Lx4A LINE L1 6227 7055 -3 3 173 945 257 4 4 chr5 105250694 105250932 -47286327 - MurSatRep1 Unknown Unknown -1839 298 61 3 1388 389 199 0 16 chr5 105250941 105251040 -47286219 + Lx4B LINE L1 5697 5788 -1262 3 1388 372 218 0 44 chr5 105251043 105251134 -47286125 - L1_Mur2 LINE L1 -215 5662 5576 3 1388 2186 35 3 0 chr5 105251146 105251428 -47285831 - ORR1A0 LTR MaLR -8 338 56 3 1388 1633 299 19 32 chr5 105251428 105252389 -47284870 + Lx6 LINE L1 5334 6298 -1162 3 1388 8404 141 114 52 chr5 105252485 105254980 -47282279 - RLTR1B-int LTR ERV1 -1067 3996 761 3 1388 4266 135 92 16 chr5 105254972 105255678 -47281581 - RMER16-int LTR ERVK -3962 1444 685 3 1388 975 157 61 11 chr5 105255659 105255839 -47281420 - RMER16-int LTR ERVK -5075 331 143 3 1388 1096 144 69 17 chr5 105256159 105256392 -47280867 - RLTR1B-int LTR ERV1 -2992 307 63 3 1388 3763 67 82 37 chr5 105256541 105257081 -47280178 - LTRIS2 LTR ERV1 0 564 1 3 1388 782 259 29 64 chr5 105258176 105258457 -47278802 - RMER13A LTR ERVK -21 839 569 3 1388 1279 162 4 16 chr5 105258690 105258934 -47278325 + ORR1A3 LTR MaLR 86 326 0 3 1388 247 180 0 0 chr5 105260187 105260237 -47277022 - MTC LTR MaLR -371 50 1 3 1388 491 69 0 0 chr5 105260332 105260404 -47276855 + B1_Mm SINE Alu 76 147 0 3 1388 995 143 0 0 chr5 105260519 105260666 -47276593 - B1_Mm SINE Alu 0 147 1 3 1388 490 254 0 50 chr5 105260850 105260991 -47276268 - B1_Mus2 SINE Alu 0 147 14 3 1388 2026 214 50 54 chr5 105261296 105261415 -47275844 - RLTR20B3 LTR ERVK 0 577 473 3 1388 297 0 0 0 chr5 105261415 105261448 -47275811 + (TC)n Simple_repeat Simple_repeat 1 33 0 3 1388 414 0 0 0 chr5 105261448 105261493 -47275766 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1388 2026 214 50 54 chr5 105261493 105261931 -47275328 - RLTR20B3 LTR ERVK -105 472 22 3 1388 3915 84 3 38 chr5 105263203 105263258 -47274001 - LTRIS_Mus LTR ERV1 0 587 534 3 1388 5743 95 77 4 chr5 105263258 105264090 -47273169 + RLTR13B1 LTR ERVK 1 893 0 3 1388 3915 84 3 38 chr5 105264090 105264642 -47272617 - LTRIS_Mus LTR ERV1 -54 533 1 3 1388 5830 86 12 42 chr5 105264977 105265372 -47271887 + RLTR13C2 LTR ERVK 1 395 -413 3 1388 1125 58 0 0 chr5 105265372 105265511 -47271748 + B1_Mus2 SINE Alu 3 141 -6 3 1388 5830 86 12 42 chr5 105265511 105265948 -47271311 + RLTR13C2 LTR ERVK 396 808 0 3 1388 387 95 48 0 chr5 105267128 105267191 -47270068 - B1_Mur3 SINE Alu -81 68 3 3 1388 1116 110 17 6 chr5 105267591 105267765 -47269494 + L1_Mus3 LINE L1 6438 6613 -25 3 1388 1191 109 38 0 chr5 105267765 105267949 -47269310 + B2_Mm1t SINE B2 1 191 -2 3 1388 1083 96 0 7 chr5 105267951 105268098 -47269161 + B1_Mus2 SINE Alu 2 147 0 3 1388 796 191 108 31 chr5 105268098 105268116 -47269143 + Lx2 LINE L1 6977 6996 -1 3 1388 1651 227 30 111 chr5 105268225 105268858 -47268401 - RLTR31A_Mm LTR ERVK -2 582 1 3 1388 575 178 7 0 chr5 105269491 105269626 -47267633 + (TA)n Simple_repeat Simple_repeat 1 136 0 3 1388 189 94 0 0 chr5 105269642 105269674 -47267585 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1388 2093 173 16 2 chr5 105269978 105270424 -47266835 - RLTR22_Mur LTR ERVK -1133 715 264 3 1388 902 75 0 50 chr5 105270425 105270565 -47266694 + B1_Mus1 SINE Alu 7 139 -9 3 1388 276 30 0 0 chr5 105270565 105270598 -47266661 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1388 1107 209 11 35 chr5 105270601 105270884 -47266375 - RLTR22_Mur LTR ERVK -1572 276 1 3 1388 229 267 15 15 chr5 105271253 105271390 -47265869 + (CATATA)n Simple_repeat Simple_repeat 4 140 0 3 1388 421 314 47 55 chr5 105271793 105272046 -47265213 + Lx8 LINE L1 7172 7422 -51 3 1388 271 291 39 0 chr5 105273223 105273326 -47263933 + B1F SINE Alu 23 129 -20 3 1388 247 290 95 45 chr5 105273346 105273610 -47263649 - L1_Rod LINE L1 -2495 3352 3076 3 1388 24 32 0 0 chr5 105273892 105273923 -47263336 + AT_rich Low_complexity Low_complexity 1 31 0 3 1388 1331 190 51 13 chr5 105274501 105274815 -47262444 - ORR1A4 LTR MaLR -1 328 3 3 1388 2399 57 88 6 chr5 105275544 105275864 -47261395 + ORR1A1 LTR MaLR 1 346 0 3 1388 902 88 0 21 chr5 105275947 105276087 -47261172 + B1_Mm SINE Alu 11 147 0 3 1388 215 93 23 0 chr5 105276088 105276131 -47261128 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 3 1388 1608 177 55 62 chr5 105276348 105276545 -47260714 + MTC LTR MaLR 1 213 -208 3 1388 1303 96 16 16 chr5 105276545 105276736 -47260523 + B2_Mm2 SINE B2 4 194 -1 3 1388 1608 177 55 62 chr5 105276736 105276954 -47260305 + MTC LTR MaLR 214 413 -8 3 1388 480 148 0 0 chr5 105277452 105277533 -47259726 + B2_Mm2 SINE B2 3 83 -112 3 1388 208 121 0 0 chr5 105277602 105277635 -47259624 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 1388 599 138 83 0 chr5 105277829 105277938 -47259321 + B2_Mm2 SINE B2 68 185 -10 3 1388 28 48 0 0 chr5 105277938 105277980 -47259279 + AT_rich Low_complexity Low_complexity 1 42 0 3 1388 2023 153 45 0 chr5 105277991 105278304 -47258955 + ORR1A2 LTR MaLR 1 327 0 3 1388 5190 198 60 30 chr5 105278304 105279541 -47257718 + ORR1A2-int LTR MaLR 1 1274 -689 3 1388 18057 75 4 5 chr5 105279541 105282587 -47254672 + L1_Mus1 LINE L1 3529 6567 0 3 1388 1225 68 7 0 chr5 105282593 105282740 -47254519 + B1_Mus1 SINE Alu 1 148 0 3 1388 28 29 0 0 chr5 105282750 105282785 -47254474 + AT_rich Low_complexity Low_complexity 1 35 0 3 1388 1379 92 21 11 chr5 105282820 105283006 -47254253 + B2_Mm2 SINE B2 2 189 -6 3 1388 919 252 176 6 chr5 105283012 105283310 -47253949 + Lx6 LINE L1 4398 4721 -1159 3 1388 4335 86 9 23 chr5 105283310 105283882 -47253377 - LTRIS2 LTR ERV1 0 564 1 3 1388 919 248 193 5 chr5 105283882 105284006 -47253253 + Lx6 LINE L1 4722 4858 -1022 3 1388 3106 231 112 80 chr5 105284017 105285060 -47252199 - RLTR25A LTR ERVK -26 1077 1 3 1388 3246 269 26 28 chr5 105285060 105286597 -47250662 + Lx6 LINE L1 4875 6421 -1039 3 1388 180 0 0 0 chr5 105286599 105286619 -47250640 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1388 195 42 0 0 chr5 105287280 105287304 -47249955 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1388 757 272 29 81 chr5 105289158 105289466 -47247793 - RMER13A LTR ERVK 0 860 569 4 1388 1419 165 0 4 chr5 105289700 105289938 -47247321 + ORR1A2 LTR MaLR 86 322 -4 3 1388 300 28 0 0 chr5 105291132 105291168 -47246091 + U2 snRNA snRNA 1 36 -152 4 1388 251 200 0 0 chr5 105291325 105291375 -47245884 - MTC LTR MaLR -371 50 1 4 1388 6747 57 10 3 chr5 105291987 105292885 -47244374 + RLTR13A3 LTR ERVK 75 978 0 4 1388 362 111 44 73 chr5 105294340 105294408 -47242851 - B1_Mur3 SINE Alu -81 68 3 4 1388 1177 100 18 103 chr5 105294792 105294944 -47242315 + L1_Mus3 LINE L1 6429 6581 -57 4 1388 2856 80 141 139 chr5 105294944 105295455 -47241804 - RLTR1B LTR ERV1 0 512 1 4 1388 1177 100 18 103 chr5 105295455 105295490 -47241769 + L1_Mus3 LINE L1 6582 6611 -27 4 1388 925 175 99 0 chr5 105295490 105295661 -47241598 + B2_Mm1t SINE B2 1 188 -5 4 1388 1177 100 18 103 chr5 105295661 105295695 -47241564 + L1_Mus3 LINE L1 6612 6632 -6 4 1388 24 32 0 0 chr5 105295735 105295766 -47241493 + AT_rich Low_complexity Low_complexity 1 31 0 4 1388 5863 63 9 0 chr5 105295933 105296674 -47240585 + L1Md_F2 LINE L1 4839 5586 -297 4 1388 8374 61 3 0 chr5 105296674 105297667 -47239592 + L1Md_F2 LINE L1 5587 6582 0 4 1388 1367 236 18 149 chr5 105297723 105298281 -47238978 - RLTR31A_Mm LTR ERVK -2 582 98 4 1388 753 117 16 8 chr5 105298474 105298603 -47238656 - RLTR22_Mur LTR ERVK -1133 715 586 4 1388 919 82 8 0 chr5 105298603 105298725 -47238534 + B1_Mm SINE Alu 24 146 -1 4 1388 283 60 20 20 chr5 105298725 105298776 -47238483 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 4 1388 1769 174 53 60 chr5 105298995 105299192 -47238067 + MTC LTR MaLR 1 213 -208 4 1388 1278 113 16 26 chr5 105299192 105299383 -47237876 + B2_Mm2 SINE B2 4 192 -3 4 1388 1769 174 53 60 chr5 105299383 105299601 -47237658 + MTC LTR MaLR 214 412 -9 4 1388 381 143 0 0 chr5 105300091 105300154 -47237105 + B2_Mm2 SINE B2 18 80 -115 4 1388 615 118 49 0 chr5 105300444 105300546 -47236713 + B2_Mm2 SINE B2 68 174 -21 4 1388 24 0 0 0 chr5 105300571 105300595 -47236664 + AT_rich Low_complexity Low_complexity 1 24 0 4 1388 1989 170 31 0 chr5 105300606 105300923 -47236336 + ORR1A2 LTR MaLR 1 327 0 4 1388 9546 173 54 31 chr5 105300923 105302841 -47234418 + ORR1A2-int LTR MaLR 1 1963 0 4 1388 2163 151 9 0 chr5 105302841 105303165 -47234094 + ORR1A2 LTR MaLR 1 327 0 4 1388 424 335 92 42 chr5 105303365 105303845 -47233414 - Lx8 LINE L1 -250 7223 6720 4 1388 26 0 0 0 chr5 105304390 105304416 -47232843 + AT_rich Low_complexity Low_complexity 1 26 0 4 1388 271 179 34 51 chr5 105304508 105304567 -47232692 + B3 SINE B2 2 59 -157 4 1388 5610 122 25 57 chr5 105304567 105306363 -47230896 + L1VL2 LINE L1 31 1757 -1858 4 1388 2967 49 6 0 chr5 105306363 105306707 -47230552 + ORR1A1 LTR MaLR 1 346 0 4 1388 9784 63 2 7 chr5 105306707 105307657 -47229602 + ORR1A1-int LTR MaLR 1 951 -841 4 1388 4862 57 19 7 chr5 105307657 105308237 -47229022 + LTRIS_Mus LTR ERV1 1 587 0 4 1388 9784 63 2 7 chr5 105308237 105308625 -47228634 + ORR1A1-int LTR MaLR 952 1333 -459 4 1388 2987 64 143 139 chr5 105309402 105309912 -47227347 - RLTR1B LTR ERV1 0 512 1 4 1388 520 312 83 80 chr5 105310847 105311185 -47226074 - Lx6 LINE L1 -586 6874 6536 4 1388 506 339 4 35 chr5 105311198 105311424 -47225835 - Lx6 LINE L1 -58 7402 7184 4 1388 316 319 51 37 chr5 105311459 105311844 -47225415 - MurSatRep1 Unknown Unknown -61 2076 1831 4 1388 336 317 30 15 chr5 105311816 105312018 -47225241 - MurSatRep1 Unknown Unknown -89 2048 1844 4 1388 467 332 40 27 chr5 105312067 105312538 -47224721 - MurSatRep1 Unknown Unknown 0 2137 1747 4 1388 7809 65 12 2 chr5 105312536 105313610 -47223649 - L1Md_F2 LINE L1 -1 6581 5497 4 1388 2075 68 0 4 chr5 105313595 105313859 -47223400 + L1_Mm LINE L1 5319 5581 -302 4 1388 441 340 19 23 chr5 105313857 105314113 -47223146 - MurSatRep1 Unknown Unknown -132 2005 1751 4 1388 276 321 7 79 chr5 105314071 105314116 -47223143 - MMSAT4 Satellite Satellite 0 168 127 4 1388 1334 103 5 21 chr5 105314116 105314304 -47222955 - B2_Mm1t SINE B2 -8 185 1 4 1388 276 321 7 79 chr5 105314304 105314410 -47222849 - MMSAT4 Satellite Satellite -42 126 28 4 1388 552 328 29 30 chr5 105314348 105315745 -47221514 - MurSatRep1 Unknown Unknown -88 2049 1738 4 1388 510 224 22 28 chr5 105316087 105316266 -47220993 - MurSatRep1 Unknown Unknown -2 2135 1958 4 1388 8793 19 0 13 chr5 105316299 105316490 -47220769 - L1Md_T LINE L1 0 6585 6406 4 1388 3083 54 2 65 chr5 105316490 105316903 -47220356 - RLTR10 LTR ERVK -3 387 1 4 1388 38815 39 1 4 chr5 105316903 105323374 -47213885 - L1Md_T LINE L1 -180 6405 1 4 1388 6056 226 36 56 chr5 105323375 105325086 -47212173 - MurSatRep1 Unknown Unknown -169 1968 293 4 1388 5739 97 33 0 chr5 105325093 105325948 -47211311 + MusHAL1 LINE L1 1199 2081 -631 4 1388 1118 110 0 0 chr5 105326129 105326275 -47210984 - B1_Mus2 SINE Alu 0 147 2 4 1388 21 57 0 0 chr5 105326432 105326467 -47210792 + AT_rich Low_complexity Low_complexity 1 35 0 4 1388 23 68 0 0 chr5 105326782 105326826 -47210433 + AT_rich Low_complexity Low_complexity 1 44 0 4 1388 2358 175 11 5 chr5 105326856 105327297 -47209962 - L1_Mur2 LINE L1 -1342 4535 4092 4 1388 336 211 14 0 chr5 105327297 105327368 -47209891 - L1_Mur2 LINE L1 -1930 3947 3876 4 1388 2683 209 20 42 chr5 105327381 105328132 -47209127 + Lx4A LINE L1 5389 6144 -914 4 1388 1175 102 0 0 chr5 105328132 105328279 -47208980 + B1_Mm SINE Alu 1 147 0 4 1388 2683 201 21 57 chr5 105328279 105328389 -47208870 + Lx4A LINE L1 6145 6233 -825 4 1388 1138 102 0 20 chr5 105328389 105328539 -47208720 + B1_Mm SINE Alu 1 147 0 4 1388 3970 214 21 4 chr5 105328570 105329396 -47207863 + Lx4A LINE L1 6218 7057 -1 4 1388 990 235 17 4 chr5 105329420 105329655 -47207604 - MurSatRep1 Unknown Unknown -1839 298 61 4 1388 662 272 8 30 chr5 105329664 105329899 -47207360 + Lx5 LINE L1 5697 5926 -1124 4 1388 2031 174 103 0 chr5 105329904 105330323 -47206936 + Lx3C LINE L1 6504 6965 -11 4 1388 260 91 23 0 chr5 105330323 105330367 -47206892 + (TAA)n Simple_repeat Simple_repeat 2 46 0 4 1388 4180 206 17 5 chr5 105330415 105331291 -47205968 + L1_Mur1 LINE L1 4230 5116 -770 4 1388 965 159 7 0 chr5 105331291 105331436 -47205823 + B1_Mus1 SINE Alu 2 147 -1 4 1388 29 0 0 0 chr5 105331442 105331471 -47205788 + AT_rich Low_complexity Low_complexity 1 29 0 4 1388 257 285 86 14 chr5 105331795 105331934 -47205325 - MT2A LTR ERVL -19 514 366 4 1388 28 0 0 0 chr5 105332057 105332085 -47205174 + AT_rich Low_complexity Low_complexity 1 28 0 4 1388 1086 97 7 0 chr5 105332171 105332315 -47204944 + B1_Mus2 SINE Alu 3 147 0 4 1388 3506 84 0 0 chr5 105332333 105332773 -47204486 + L1_Mus1 LINE L1 6128 6567 0 4 1388 1829 253 77 77 chr5 105332979 105333592 -47203667 + RLTR18 LTR ERVK 4 616 0 4 1388 406 328 23 12 chr5 105333735 105333908 -47203351 + B3 SINE B2 42 216 0 4 1388 252 0 0 0 chr5 105333947 105333975 -47203284 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1388 585 0 0 0 chr5 105333975 105334039 -47203220 + (GA)n Simple_repeat Simple_repeat 2 66 0 4 1388 311 319 0 21 chr5 105334067 105334160 -47203099 + PB1D9 SINE Alu 1 91 -29 4 1388 1496 243 164 50 chr5 105334204 105335005 -47202254 + Lx6 LINE L1 3989 4880 -1000 4 1388 2558 256 46 54 chr5 105335005 105335199 -47202060 - RLTR25B LTR ERVK 0 1028 814 4 1388 342 0 0 0 chr5 105335199 105335237 -47202022 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1388 450 0 0 0 chr5 105335237 105335286 -47201973 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1388 2558 256 46 54 chr5 105335286 105335458 -47201801 - RLTR25B LTR ERVK -215 813 646 4 1388 1198 55 0 0 chr5 105335458 105335603 -47201656 - B1_Mm SINE Alu 0 147 3 4 1388 2558 254 102 88 chr5 105335603 105336322 -47200937 - RLTR25B LTR ERVK -384 719 2 4 1388 1486 265 69 15 chr5 105336323 105336935 -47200324 + Lx6 LINE L1 4876 5520 -360 4 1388 2822 74 16 245 chr5 105336935 105337560 -47199699 - RLTR45 LTR ERVK 0 482 1 4 1388 33782 66 71 72 chr5 105337560 105340094 -47197165 - RLTR45-int LTR ERVK 0 7244 4749 4 1388 198 0 0 0 chr5 105340094 105340116 -47197143 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4 1388 33782 66 71 72 chr5 105340116 105342977 -47194282 - RLTR45-int LTR ERVK -2496 4748 1858 4 1388 6576 67 40 19 chr5 105342968 105344330 -47192929 - RLTR45-int LTR ERVK -5826 1418 1 4 1388 3043 74 17 186 chr5 105344330 105344910 -47192349 - RLTR45 LTR ERVK 0 482 1 4 1388 2168 294 40 38 chr5 105344924 105346011 -47191248 + Lx6 LINE L1 5528 6636 -824 4 1388 1170 272 25 53 chr5 105346064 105346463 -47190796 + Lx6 LINE L1 7064 7451 -9 4 1388 821 123 0 58 chr5 105346497 105346652 -47190607 + B1_Mus1 SINE Alu 1 146 -2 4 1388 234 266 0 15 chr5 105346653 105346718 -47190541 + A-rich Low_complexity Low_complexity 2 65 0 4 1388 342 0 0 0 chr5 105346817 105346855 -47190404 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1388 839 208 21 11 chr5 105347121 105347311 -47189948 + B2_Mm2 SINE B2 2 193 -2 4 1388 218 161 15 46 chr5 105348002 105348067 -47189192 + A-rich Low_complexity Low_complexity 2 64 0 4 1388 1105 96 0 0 chr5 105348762 105348908 -47188351 - B1_Mus2 SINE Alu -1 146 1 4 1388 222 118 0 0 chr5 105349068 105349102 -47188157 + (TTCTCC)n Simple_repeat Simple_repeat 5 38 0 4 1388 541 227 0 57 chr5 105349103 105349243 -47188016 - B1_Mus1 SINE Alu -2 146 15 4 1388 283 208 12 72 chr5 105349737 105349820 -47187439 - RLTR20B3 LTR ERVK 0 577 500 4 1388 3591 124 48 32 chr5 105349822 105350347 -47186912 + RLTR5_Mm LTR ERV1 1 516 -112 4 1388 183 42 0 0 chr5 105350347 105350371 -47186888 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1388 3591 124 48 32 chr5 105350371 105350463 -47186796 + RLTR5_Mm LTR ERV1 517 627 -1 4 1388 50094 110 19 20 chr5 105350463 105357921 -47179338 + MURVY-int LTR ERV1 1 7452 0 4 1388 3888 128 14 28 chr5 105357921 105358558 -47178701 + RLTR5_Mm LTR ERV1 1 628 0 4 1388 243 0 0 0 chr5 105358577 105358604 -47178655 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1388 1707 219 39 27 chr5 105358608 105359050 -47178209 - RLTR20B3 LTR ERVK -110 467 21 4 1388 26 74 0 0 chr5 105359479 105359533 -47177726 + AT_rich Low_complexity Low_complexity 1 54 0 4 1388 1160 83 0 0 chr5 105359605 105359749 -47177510 + B1_Mm SINE Alu 1 144 -3 4 1388 23 0 0 0 chr5 105359749 105359772 -47177487 + AT_rich Low_complexity Low_complexity 1 23 0 4 1388 4748 60 2 10 chr5 105361003 105361595 -47175664 - LTRIS_Mus LTR ERV1 0 587 1 4 1388 6696 158 21 44 chr5 105361595 105363114 -47174145 - MuRRS-int LTR ERV1 0 4690 3089 4 1388 331 317 48 18 chr5 105363390 105363557 -47173702 - RMER13A LTR ERVK 0 860 689 4 1388 553 314 23 50 chr5 105363716 105363974 -47173285 + Lx7 LINE L1 6178 6428 -1268 4 1388 268 196 0 0 chr5 105364036 105364082 -47173177 - L1_Mur3 LINE L1 -6662 1050 1005 4 1388 29 60 0 0 chr5 105364229 105364279 -47172980 + AT_rich Low_complexity Low_complexity 1 50 0 4 1388 613 319 108 3 chr5 105364656 105364971 -47172288 - Lx8 LINE L1 -398 7075 6728 4 1388 830 93 0 0 chr5 105365669 105365776 -47171483 + U6 snRNA snRNA 1 107 0 4 1388 1283 95 15 5 chr5 105365777 105365978 -47171281 + L1_Mus3 LINE L1 6436 6638 0 4 1388 21 57 0 0 chr5 105366615 105366650 -47170609 + AT_rich Low_complexity Low_complexity 1 35 0 4 1388 471 118 0 0 chr5 105367383 105367459 -47169800 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1388 1870 215 30 0 chr5 105368796 105369200 -47168059 + MTC LTR MaLR 6 421 0 4 1388 3127 85 2 0 chr5 105369318 105369717 -47167542 + MTB LTR MaLR 1 400 0 4 1388 235 146 0 0 chr5 105370045 105370086 -47167173 - ORR1D1 LTR MaLR 0 374 334 4 1388 817 246 42 45 chr5 105370087 105370419 -47166840 + L1_Mur3 LINE L1 4307 4637 -1243 5 1388 2822 94 22 0 chr5 105370419 105370832 -47166427 + BGLII_Mus LTR ERVK 1 422 0 5 1388 377 202 273 23 chr5 105370832 105370964 -47166295 + L1_Mur3 LINE L1 4525 4689 -1191 5 1388 361 266 67 47 chr5 105371177 105371327 -47165932 - RLTR42-int LTR ERVK -2998 2524 2372 5 1388 1358 242 40 23 chr5 105372365 105372716 -47164543 - MTD LTR MaLR -5 414 58 5 1388 635 171 5 5 chr5 105372730 105372950 -47164309 + CT-rich Low_complexity Low_complexity 1 220 0 5 1388 412 113 0 0 chr5 105372950 105373012 -47164247 - B1_Mus2 SINE Alu -16 131 70 5 1388 758 223 0 0 chr5 105373835 105373983 -47163276 - B1_Mur3 SINE Alu 0 149 2 5 1388 1052 189 6 172 chr5 105374275 105374588 -47162671 + RMER19B LTR ERVK 1 261 -641 5 1388 686 260 117 27 chr5 105374963 105375220 -47162039 + Lx8 LINE L1 6612 6891 -582 5 1388 574 344 40 3 chr5 105375600 105375900 -47161359 + Lx8 LINE L1 6859 7169 -304 5 1388 1178 75 0 0 chr5 105375911 105376058 -47161201 + B1_Mm SINE Alu 1 147 0 5 1388 243 0 0 0 chr5 105376058 105376085 -47161174 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1388 776 299 31 18 chr5 105376136 105376422 -47160837 - ORR1D2 LTR MaLR 0 370 81 5 1388 489 258 26 125 chr5 105377682 105377874 -47159385 - B3A SINE B2 0 216 24 5 1388 303 260 26 0 chr5 105378100 105378177 -47159082 + MTD LTR MaLR 1 79 -342 5 1388 616 191 15 31 chr5 105378179 105378309 -47158950 + B1_Mur3 SINE Alu 21 148 -1 5 1388 1159 77 0 12 chr5 105378319 105378489 -47158770 + (GGGAA)n Simple_repeat Simple_repeat 4 171 0 5 1388 302 203 16 0 chr5 105378510 105378574 -47158685 + MTD LTR MaLR 137 201 -220 5 1388 506 120 76 0 chr5 105378695 105378787 -47158472 + MTD LTR MaLR 209 307 -112 5 1388 276 100 0 0 chr5 105379056 105379096 -47158163 + (TTA)n Simple_repeat Simple_repeat 3 42 0 5 1388 213 314 17 33 chr5 105379125 105379306 -47157953 + (TG)n Simple_repeat Simple_repeat 2 179 0 5 1388 397 271 52 59 chr5 105379422 105379575 -47157684 - RSINE1 SINE B4 -1 164 13 5 1388 640 254 22 44 chr5 105379924 105380105 -47157154 + B3A SINE B2 3 179 -19 5 1388 261 0 0 0 chr5 105380106 105380135 -47157124 + (CA)n Simple_repeat Simple_repeat 1 29 0 5 1388 569 101 10 0 chr5 105380135 105380234 -47157025 + (GA)n Simple_repeat Simple_repeat 1 100 0 5 1388 594 0 0 0 chr5 105381238 105381304 -47155955 + (TTTTA)n Simple_repeat Simple_repeat 1 66 0 5 1388 453 259 158 0 chr5 105381317 105381475 -47155784 - ID_B1 SINE B4 -28 196 14 5 1389 850 62 16 54 chr5 105382337 105382464 -47154795 + (TAGA)n Simple_repeat Simple_repeat 2 124 0 5 1389 2421 84 74 25 chr5 105382464 105382856 -47154403 + IAPLTR2a LTR ERVK 1 411 0 5 1389 850 62 16 54 chr5 105382856 105382914 -47154345 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 5 1389 220 191 0 0 chr5 105382916 105382963 -47154296 + (CAGA)n Simple_repeat Simple_repeat 3 49 0 5 1389 406 38 62 25 chr5 105382963 105383044 -47154215 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 5 1389 650 234 6 0 chr5 105383062 105383237 -47154022 + (TAGA)n Simple_repeat Simple_repeat 4 179 0 5 1389 646 266 49 59 chr5 105383242 105383350 -47153909 + B3 SINE B2 5 121 -95 5 1389 2230 199 9 7 chr5 105383350 105383770 -47153489 + MTC LTR MaLR 1 421 0 5 1389 646 266 49 59 chr5 105383770 105383865 -47153394 + B3 SINE B2 122 206 -10 5 1389 398 296 94 30 chr5 105383992 105384194 -47153065 + MLT1A LTR MaLR 3 217 -157 5 1389 343 241 60 35 chr5 105384941 105385057 -47152202 + B1_Mus1 SINE Alu 30 148 0 5 1389 461 17 17 0 chr5 105385251 105385309 -47151950 + (TC)n Simple_repeat Simple_repeat 2 60 0 5 1389 4695 46 0 24 chr5 105385449 105386028 -47151231 - L1Md_F2 LINE L1 -13 6569 6005 5 1389 371 318 104 19 chr5 105386364 105386633 -47150626 - L1MA6 LINE L1 -350 5950 5659 5 1389 1704 222 25 5 chr5 105386919 105387313 -47149946 - MTD LTR MaLR 0 419 18 5 1389 820 279 55 7 chr5 105387814 105388085 -47149174 + B4A SINE B4 1 284 -8 5 1389 252 214 17 8 chr5 105388240 105388358 -47148901 + (CA)n Simple_repeat Simple_repeat 1 119 0 5 1389 327 253 119 12 chr5 105388690 105388858 -47148401 + L1M2 LINE L1 5113 5298 -845 5 1389 495 335 45 13 chr5 105388866 105389023 -47148236 + RSINE1 SINE B4 4 165 0 5 1389 493 302 93 59 chr5 105389151 105389646 -47147613 + L1MB3 LINE L1 5479 5990 -193 5 1389 746 276 44 13 chr5 105389756 105389984 -47147275 + Lx6 LINE L1 7199 7433 -27 5 1389 6055 69 3 3 chr5 105391459 105392227 -47145032 + L1Md_F2 LINE L1 5802 6569 -13 5 1389 701 302 18 18 chr5 105392822 105393041 -47144218 - ID_B1 SINE B4 -4 220 2 5 1389 3906 92 99 0 chr5 105393112 105393656 -47143603 + MT2B LTR ERVL 4 601 0 5 1389 853 106 28 0 chr5 105393766 105393908 -47143351 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 5 1389 4010 83 52 2 chr5 105393989 105394541 -47142718 - L1_Mus3 LINE L1 0 6638 6059 5 1389 3053 212 54 1 chr5 105394604 105395285 -47141974 - RMER1B Other Other -144 922 121 5 1389 636 165 26 0 chr5 105395290 105395405 -47141854 - MTC LTR MaLR -288 133 16 5 1389 345 140 0 0 chr5 105395977 105396034 -47141225 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1389 341 75 0 19 chr5 105396085 105396139 -47141120 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1389 1284 89 0 0 chr5 105396234 105396414 -47140845 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1389 690 13 0 0 chr5 105396414 105396493 -47140766 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 5 1389 1084 70 7 0 chr5 105396493 105396636 -47140623 - B1_Mus1 SINE Alu -3 145 2 5 1389 1547 117 4 0 chr5 105397627 105397857 -47139402 + ORR1A2 LTR MaLR 3 233 -94 5 1389 228 271 150 39 chr5 105397879 105398006 -47139253 + MLT1B LTR MaLR 213 353 -37 5 1389 270 0 0 0 chr5 105398915 105398945 -47138314 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1389 700 48 146 0 chr5 105398987 105399090 -47138169 - B1_Mus2 SINE Alu 0 147 30 5 1389 216 0 0 0 chr5 105399208 105399232 -47138027 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1389 1317 72 61 0 chr5 105399714 105399895 -47137364 - B2_Mm2 SINE B2 -2 193 2 5 1389 240 347 27 0 chr5 105399952 105400027 -47137232 + B4A SINE B4 36 112 -180 5 1389 1585 124 124 0 chr5 105400118 105400409 -47136850 + IAPEY3_LTR LTR ERVK 1 327 -5 5 1389 562 178 12 0 chr5 105400495 105400658 -47136601 + (CA)n Simple_repeat Simple_repeat 1 165 0 5 1389 1106 102 57 0 chr5 105401461 105401637 -47135622 + B2_Mm2 SINE B2 10 195 0 5 1389 882 287 32 99 chr5 105401840 105402243 -47135016 - MTE2a LTR MaLR 0 379 4 5 1389 836 140 225 0 chr5 105402456 105402634 -47134625 + URR1A DNA MER1_type 7 224 -2 5 1389 333 284 59 29 chr5 105405555 105405913 -47131346 - L1_Mur3 LINE L1 -2614 3529 3135 5 1389 364 313 108 29 chr5 105405997 105406201 -47131058 + B4 SINE B4 46 265 -27 5 1389 246 255 0 0 chr5 105406282 105406376 -47130883 + (CA)n Simple_repeat Simple_repeat 1 94 0 5 1389 1093 83 14 0 chr5 105406425 105406570 -47130689 + B1_Mm SINE Alu 1 147 0 5 1389 192 77 0 0 chr5 105407236 105407262 -47129997 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1389 26 74 0 0 chr5 105408753 105408807 -47128452 + AT_rich Low_complexity Low_complexity 1 54 0 5 1389 293 309 10 40 chr5 105408836 105408937 -47128322 - PB1D10 SINE Alu -3 114 17 5 1389 21 57 0 0 chr5 105408937 105408972 -47128287 + AT_rich Low_complexity Low_complexity 1 35 0 5 1389 220 27 0 51 chr5 105409153 105409192 -47128067 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1389 1180 61 0 7 chr5 105409195 105409344 -47127915 - B1_Mus1 SINE Alu 0 148 1 5 1389 278 224 0 4 chr5 105409496 105409567 -47127692 + Lx2B LINE L1 6182 6274 -735 5 1389 661 193 0 29 chr5 105409561 105409700 -47127559 + Lx3C LINE L1 6378 6512 -464 5 1389 278 257 26 87 chr5 105409811 105409926 -47127333 - Lx2B LINE L1 -3 6997 6890 5 1389 865 138 0 15 chr5 105409905 105410037 -47127222 + Lx2B LINE L1 6514 6643 -357 5 1389 389 40 7 0 chr5 105410037 105410095 -47127164 + Lx2A1 LINE L1 5723 5782 -1276 5 1389 393 247 130 50 chr5 105410612 105410812 -47126447 + B3 SINE B2 1 216 0 5 1389 226 160 0 20 chr5 105412051 105412102 -47125157 + T-rich Low_complexity Low_complexity 3 52 0 5 1389 256 261 97 11 chr5 105412272 105412365 -47124894 + PB1D7 SINE Alu 15 115 -5 5 1389 216 97 0 0 chr5 105412420 105412451 -47124808 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1389 602 204 119 13 chr5 105412677 105412836 -47124423 - B3 SINE B2 -38 178 3 5 1389 1557 197 59 32 chr5 105413028 105413312 -47123947 - L1_Rod LINE L1 -4193 1654 1361 5 1389 1187 48 0 33 chr5 105413312 105413464 -47123795 - B1_Mm SINE Alu 0 147 1 5 1389 1557 190 88 3 chr5 105413464 105413718 -47123541 - L1_Rod LINE L1 -4487 1360 1092 5 1389 993 124 25 56 chr5 105413741 105413937 -47123322 + B2_Mm2 SINE B2 1 190 -5 5 1389 933 216 14 24 chr5 105414539 105414752 -47122507 - B3 SINE B2 -4 212 2 5 1389 48 53 0 0 chr5 105414875 105414951 -47122308 + AT_rich Low_complexity Low_complexity 1 76 0 5 1389 259 253 64 32 chr5 105415345 105415439 -47121820 - PB1D7 SINE Alu -23 97 1 5 1389 288 347 0 50 chr5 105415465 105415565 -47121694 + Tigger5 DNA MER2_type 147 241 -2165 5 1389 256 254 14 14 chr5 105415571 105415643 -47121616 + Tigger5 DNA MER2_type 2303 2374 -32 5 1389 520 225 8 40 chr5 105415738 105415863 -47121396 + L1_Mur3 LINE L1 4248 4368 -1512 5 1389 1819 102 10 10 chr5 105417192 105417488 -47119771 + RMER6A LTR ERVK 461 756 0 5 1389 356 319 12 0 chr5 105417688 105417848 -47119411 + CT-rich Low_complexity Low_complexity 2 163 0 5 1389 26 0 0 0 chr5 105417869 105417895 -47119364 + AT_rich Low_complexity Low_complexity 1 26 0 5 1389 555 74 0 0 chr5 105418438 105418519 -47118740 + (TC)n Simple_repeat Simple_repeat 2 82 0 5 1389 211 239 0 0 chr5 105418840 105418886 -47118373 + T-rich Low_complexity Low_complexity 1 46 0 5 1389 297 175 95 48 chr5 105418974 105419058 -47118201 + B1_Mur1 SINE Alu 28 115 -34 5 1389 420 352 18 18 chr5 105419140 105419305 -47117954 - MTE2b LTR MaLR -140 239 75 6 1389 33069 70 5 4 chr5 105419305 105420862 -47116397 + L1Md_F2 LINE L1 411 1966 -3917 6 1389 367 19 39 0 chr5 105420862 105420914 -47116345 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 6 1389 33069 73 7 1 chr5 105420914 105424509 -47112750 + L1Md_F2 LINE L1 1967 5584 -299 6 1389 7769 62 13 9 chr5 105424510 105425501 -47111758 + L1Md_F2 LINE L1 5588 6582 0 6 1389 249 226 154 5 chr5 105425508 105425616 -47111643 - MTE2b LTR MaLR -299 120 1 6 1389 185 35 69 0 chr5 105426049 105426078 -47111181 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1389 401 254 127 0 chr5 105426091 105426201 -47111058 - RSINE1 SINE B4 -17 148 25 6 1389 21 57 0 0 chr5 105427469 105427504 -47109755 + AT_rich Low_complexity Low_complexity 1 35 0 6 1389 486 0 0 0 chr5 105428119 105428173 -47109086 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1389 270 0 0 0 chr5 105428173 105428202 -47109057 + (GA)n Simple_repeat Simple_repeat 2 31 0 6 1389 273 57 0 0 chr5 105428202 105428237 -47109022 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1389 851 275 51 39 chr5 105428284 105428541 -47108718 - B4A SINE B4 -32 260 1 6 1389 21 0 0 0 chr5 105428980 105429001 -47108258 + AT_rich Low_complexity Low_complexity 1 21 0 6 1389 1366 184 34 54 chr5 105429082 105429491 -47107768 - RMER17C LTR ERVK 0 410 10 6 1389 321 253 63 0 chr5 105431044 105431139 -47106120 - MTEb LTR MaLR -46 333 233 6 1389 677 187 0 8 chr5 105431560 105431800 -47105459 + CT-rich Low_complexity Low_complexity 1 238 0 6 1389 475 182 0 18 chr5 105431759 105431982 -47105277 + (TCTCTG)n Simple_repeat Simple_repeat 1 218 0 6 1389 2367 229 20 41 chr5 105432202 105432788 -47104471 + Lx7 LINE L1 6612 7185 -511 6 1389 262 269 81 44 chr5 105433731 105433867 -47103392 + B4 SINE B4 2 142 -150 6 1389 232 148 15 62 chr5 105434002 105434067 -47103192 + (CAGAGA)n Simple_repeat Simple_repeat 6 67 0 6 1389 321 284 0 17 chr5 105434460 105434632 -47102627 + (CA)n Simple_repeat Simple_repeat 2 170 0 6 1389 1123 88 0 0 chr5 105434839 105434986 -47102273 - B1_Mm SINE Alu 0 147 1 6 1389 240 338 78 54 chr5 105435522 105435688 -47101571 - Lx8 LINE L1 -148 7325 7156 6 1389 262 349 48 12 chr5 105436058 105436226 -47101033 + MLT1A0 LTR MaLR 168 341 -24 6 1389 306 369 97 21 chr5 105436362 105436600 -47100659 + Lx8 LINE L1 7126 7381 -92 6 1389 606 216 193 0 chr5 105436892 105437063 -47100196 + B3 SINE B2 9 212 -4 6 1389 1511 150 117 26 chr5 105437272 105437615 -47099644 + ORR1D1 LTR MaLR 1 374 0 6 1389 2001 135 0 0 chr5 105438056 105438375 -47098884 + ORR1A2 LTR MaLR 1 319 -8 6 1389 431 294 59 0 chr5 105439287 105439457 -47097802 - Lx9 LINE L1 -195 7449 7270 6 1389 226 303 121 22 chr5 105439446 105439537 -47097722 + Lx9 LINE L1 6591 6690 -954 6 1389 435 38 0 0 chr5 105440583 105440636 -47096623 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1389 228 67 0 0 chr5 105441296 105441326 -47095933 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1389 932 253 83 40 chr5 105442039 105442364 -47094895 + Lx8 LINE L1 7049 7387 -86 6 1389 288 288 153 0 chr5 105442560 105442671 -47094588 - B3A SINE B2 -62 136 9 6 1389 640 245 114 26 chr5 105443359 105443631 -47093628 - MTE2b LTR MaLR -11 368 73 6 1389 229 304 14 14 chr5 105446282 105446352 -47090907 + ID_B1 SINE B4 23 92 -132 6 1389 227 315 0 53 chr5 105446598 105446712 -47090547 + CT-rich Low_complexity Low_complexity 5 112 0 6 1389 474 108 0 0 chr5 105447954 105448028 -47089231 + (CA)n Simple_repeat Simple_repeat 2 75 0 6 1389 1099 88 0 13 chr5 105448224 105448362 -47088897 + B1_Mus1 SINE Alu 1 138 -10 6 1389 234 0 0 0 chr5 105448362 105448388 -47088871 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1389 1099 88 0 13 chr5 105448388 105448399 -47088860 + B1_Mus1 SINE Alu 139 148 0 6 1389 10401 89 19 1 chr5 105448407 105450490 -47086769 + L1_Mus2 LINE L1 4445 6566 0 6 1389 36051 36 2 0 chr5 105451112 105456534 -47080725 + L1Md_T LINE L1 62 5589 -297 6 1389 9141 6 0 0 chr5 105456535 105457530 -47079729 + L1Md_T LINE L1 5591 6585 0 6 1389 246 123 53 0 chr5 105458197 105458254 -47079005 + (TG)n Simple_repeat Simple_repeat 1 60 0 6 1389 370 312 57 22 chr5 105458287 105458516 -47078743 - B4A SINE B4 -54 238 2 6 1389 353 316 0 0 chr5 105458726 105458821 -47078438 + B1F2 SINE Alu 55 149 0 6 1389 318 106 0 0 chr5 105458821 105458868 -47078391 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 6 1389 412 268 15 38 chr5 105458880 105459012 -47078247 + B1_Mur1 SINE Alu 12 140 -9 6 1389 736 212 165 20 chr5 105460512 105460784 -47076475 + L1_Mur3 LINE L1 4933 5252 -628 6 1389 6206 65 25 8 chr5 105460800 105461594 -47075665 - RLTR13C2 LTR ERVK 0 808 1 6 1389 861 151 20 0 chr5 105461594 105461746 -47075513 - Lx LINE L1 -503 6151 5997 6 1389 2740 153 23 0 chr5 105461746 105462222 -47075037 + Lx LINE L1 6161 6647 -7 6 1389 269 172 18 116 chr5 105462222 105462334 -47074925 + L1_Mur3 LINE L1 5253 5353 -527 6 1389 1431 167 10 10 chr5 105462430 105462898 -47074361 + L1_Mur2 LINE L1 868 1404 -4473 6 1389 11632 180 31 4 chr5 105462900 105465179 -47072080 + L1_Mur2 LINE L1 3487 5826 -51 6 1389 1297 147 13 13 chr5 105465179 105465414 -47071845 - RLTR33 LTR ERVK 0 678 444 6 1389 1640 180 19 6 chr5 105465411 105465735 -47071524 + RMER20B LTR ERVK 44 371 -256 6 1389 788 239 91 22 chr5 105465778 105466009 -47071250 + RMER20B LTR ERVK 360 606 -21 6 1389 3296 136 125 57 chr5 105466114 105466908 -47070351 + RMER17D LTR ERVK 26 873 -16 6 1389 590 267 72 8 chr5 105467108 105467357 -47069902 + L1M2 LINE L1 4764 5028 -1115 6 1389 659 228 0 6 chr5 105467492 105467673 -47069586 + GA-rich Low_complexity Low_complexity 1 180 0 6 1389 620 150 23 23 chr5 105467721 105467898 -47069361 + GA-rich Low_complexity Low_complexity 4 180 0 6 1389 475 300 62 31 chr5 105468173 105468708 -47068551 + L1M2 LINE L1 5086 5646 -666 6 1389 690 253 131 12 chr5 105468710 105468962 -47068297 + MTEa LTR MaLR 3 284 -95 6 1389 323 271 58 29 chr5 105468982 105469119 -47068140 + RLTR15 LTR ERVK 33 173 -186 6 1389 358 276 48 43 chr5 105469155 105469363 -47067896 + RLTR15 LTR ERVK 133 341 -18 6 1389 419 52 17 0 chr5 105469415 105469473 -47067786 + (TTG)n Simple_repeat Simple_repeat 2 60 0 6 1389 1685 167 7 7 chr5 105469502 105469804 -47067455 + Lx2 LINE L1 6696 6997 0 6 1389 198 0 0 0 chr5 105469813 105469835 -47067424 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 6 1389 435 264 73 9 chr5 105469906 105470096 -47067163 + B3A SINE B2 2 215 -1 6 1389 388 318 55 33 chr5 105471028 105471210 -47066049 + ORR1E LTR MaLR 12 197 -162 6 1389 842 150 7 0 chr5 105471704 105471857 -47065402 + GA-rich Low_complexity Low_complexity 3 156 0 6 1389 36978 63 1 34 chr5 105472142 105476704 -47060555 + L1Md_T LINE L1 99 4442 -1441 6 1389 1737 21 0 0 chr5 105476704 105476896 -47060363 + B2_Mm1a SINE B2 2 193 0 6 1389 36978 30 0 6 chr5 105476896 105478063 -47059196 + L1Md_T LINE L1 4443 5586 -297 6 1389 8179 56 0 0 chr5 105478063 105479078 -47058181 + L1Md_T LINE L1 5587 6582 0 6 1389 1532 25 0 61 chr5 105479078 105479304 -47057955 + L1Md_F2 LINE L1 6382 6582 0 6 1389 585 322 25 5 chr5 105479314 105479517 -47057742 - B3 SINE B2 -5 211 5 6 1389 272 319 23 23 chr5 105480661 105480834 -47056425 + L1M5 LINE L1 5079 5251 -895 6 1389 269 319 71 27 chr5 105481166 105481350 -47055909 - MER57F LTR ERV1 -217 219 28 6 1389 581 296 56 59 chr5 105481357 105481798 -47055461 + L1MB3 LINE L1 5406 5829 -354 6 1389 183 42 0 0 chr5 105482047 105482071 -47055188 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1389 525 16 0 0 chr5 105482631 105482693 -47054566 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1389 1328 209 82 28 chr5 105483057 105483446 -47053813 + RMER17C LTR ERVK 1 410 0 6 1389 234 219 0 0 chr5 105484238 105484302 -47052957 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1389 787 299 51 29 chr5 105484322 105484598 -47052661 - B4A SINE B4 -10 282 1 6 1389 6599 74 1 9 chr5 105484718 105485581 -47051678 - L1_Mus2 LINE L1 0 6566 5711 6 1389 925 238 61 39 chr5 105486010 105486442 -47050817 - RMER17C LTR ERVK 0 410 76 6 1389 23 0 0 0 chr5 105486965 105486988 -47050271 + AT_rich Low_complexity Low_complexity 1 23 0 6 1389 199 26 77 26 chr5 105486988 105487027 -47050232 + (TATAA)n Simple_repeat Simple_repeat 4 44 0 6 1389 232 314 103 19 chr5 105487551 105487658 -47049601 - RSINE1 SINE B4 -9 156 41 6 1389 301 244 77 11 chr5 105487755 105487846 -47049413 - MTE2b LTR MaLR -47 332 236 6 1389 642 235 0 7 chr5 105488279 105488580 -47048679 + CT-rich Low_complexity Low_complexity 1 298 0 6 1389 323 168 56 0 chr5 105488591 105488734 -47048525 + (TCTG)n Simple_repeat Simple_repeat 2 152 0 6 1389 2890 231 37 29 chr5 105488956 105489687 -47047572 + Lx7 LINE L1 6612 7348 -348 6 1389 180 0 0 0 chr5 105489687 105489707 -47047552 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1389 438 234 0 0 chr5 105489732 105489839 -47047420 + CT-rich Low_complexity Low_complexity 1 107 0 6 1389 207 254 0 27 chr5 105489842 105489859 -47047400 + T-rich Low_complexity Low_complexity 55 71 0 6 1389 1157 88 0 0 chr5 105489859 105490006 -47047253 - B1_Mus2 SINE Alu 0 147 1 6 1389 207 254 0 27 chr5 105490006 105490061 -47047198 + T-rich Low_complexity Low_complexity 1 54 0 6 1389 264 255 38 35 chr5 105491153 105491289 -47045970 + B4A SINE B4 2 142 -150 6 1389 208 130 17 69 chr5 105491424 105491482 -47045777 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 6 1389 272 158 18 0 chr5 105491895 105491952 -47045307 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1389 1936 156 21 86 chr5 105492184 105492604 -47044655 - RLTR9C LTR ERVK 0 393 1 6 1389 311 308 86 43 chr5 105493183 105493346 -47043913 - Lx8 LINE L1 -148 7325 7156 6 1389 426 355 33 15 chr5 105493618 105493890 -47043369 + MLT1A0 LTR MaLR 72 348 -17 6 1389 340 330 76 38 chr5 105494016 105494227 -47043032 + Lx8 LINE L1 7126 7344 -129 6 1389 315 65 0 0 chr5 105494355 105494401 -47042858 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 6 1389 546 216 45 0 chr5 105494581 105494715 -47042544 + B3 SINE B2 9 148 -68 6 1389 1375 191 82 23 chr5 105494943 105495296 -47041963 + ORR1D1 LTR MaLR 1 374 0 6 1389 1684 21 5 0 chr5 105495693 105495884 -47041375 - B2_Mm1t SINE B2 0 193 2 6 1389 1876 143 13 0 chr5 105495961 105496276 -47040983 + ORR1A2 LTR MaLR 1 319 -8 6 1389 414 302 31 0 chr5 105497193 105497352 -47039907 - Lx9 LINE L1 -195 7449 7286 7 1389 288 0 0 0 chr5 105498503 105498535 -47038724 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1389 8331 44 4 1 chr5 105498610 105500000 -47037259 - L1Md_F3 LINE L1 -14 6570 5177 7 1389 31703 68 2 0 chr5 105500000 105504722 -47032537 - L1Md_A LINE L1 -707 5176 491 1 1389 6792 119 56 9 chr5 105505378 105506439 -47030820 - RLTR13D3 LTR ERVK -4 1110 1 2 1389 815 286 116 44 chr5 105507107 105507494 -47029765 + Lx8 LINE L1 7034 7448 -25 3 1389 281 331 123 0 chr5 105507622 105507752 -47029507 - B3A SINE B2 -44 154 9 4 1389 226 176 54 0 chr5 105507876 105507950 -47029309 + MER33 DNA MER1_type 158 235 -89 5 1389 685 282 66 83 chr5 105508500 105508848 -47028411 - MTE2b LTR MaLR -11 368 27 6 173 387 263 0 0 chr5 105512953 105513071 -47024188 + (CA)n Simple_repeat Simple_repeat 2 119 0 7 1390 216 130 0 0 chr5 105513552 105513598 -47023661 + (TTGG)n Simple_repeat Simple_repeat 2 47 0 8 1390 189 0 0 0 chr5 105513596 105513617 -47023642 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1390 1168 62 7 0 chr5 105513621 105513767 -47023492 - B1_Mm SINE Alu 0 147 1 1 1390 194 0 39 0 chr5 105514523 105514549 -47022710 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1390 396 301 66 59 chr5 105514826 105515115 -47022144 - B4A SINE B4 0 292 2 1 1390 378 242 0 50 chr5 105515323 105515423 -47021836 + B1F1 SINE Alu 55 149 0 1 1390 360 111 0 0 chr5 105515425 105515479 -47021780 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 1 1390 455 244 21 49 chr5 105515492 105515634 -47021625 + B1_Mur1 SINE Alu 9 146 -3 1 1390 38695 31 2 1 chr5 105516122 105522792 -47014467 - L1Md_T LINE L1 0 6585 1 1 1390 555 255 41 41 chr5 105523752 105523948 -47013311 + L1_Mur3 LINE L1 4933 5128 -752 1 1390 913 189 1 8 chr5 105524019 105524200 -47013059 - Lx LINE L1 -494 6160 5997 1 1390 2333 181 38 13 chr5 105524200 105524676 -47012583 + Lx LINE L1 6161 6648 -6 1 1390 343 202 11 33 chr5 105524697 105524789 -47012470 + L1_Mur3 LINE L1 5264 5353 -527 1 1390 1263 170 5 9 chr5 105524907 105525357 -47011902 + Lx5 LINE L1 889 1406 -4471 1 1390 2682 144 8 6 chr5 105525358 105525827 -47011432 + Lx5 LINE L1 3488 3957 -1920 1 1390 2016 162 6 0 chr5 105525825 105526158 -47011101 + Lx5 LINE L1 5269 5603 -274 1 1390 3388 141 19 26 chr5 105526158 105526484 -47010775 - RLTR33 LTR ERVK -68 610 296 2 1390 5612 112 18 48 chr5 105526484 105527418 -47009841 + RMER17A2 LTR ERVK 1 906 0 2 1390 3388 141 19 26 chr5 105527418 105527705 -47009554 - RLTR33 LTR ERVK -383 295 1 2 1390 6129 170 30 72 chr5 105527888 105529171 -47008088 + Lx5 LINE L1 5820 7048 -2 1 1390 353 283 0 0 chr5 105529188 105529280 -47007979 + L1_Mur3 LINE L1 5375 5466 -414 1 1390 310 197 0 0 chr5 105529282 105529343 -47007916 + Lx7 LINE L1 7052 7112 -584 2 1390 712 195 58 5 chr5 105529451 105529642 -47007617 + RMER17B LTR ERVK 183 383 -575 2 1390 729 122 0 0 chr5 105529746 105529861 -47007398 + (GGGA)n Simple_repeat Simple_repeat 4 118 0 2 1390 231 229 0 16 chr5 105529862 105529924 -47007335 + GA-rich Low_complexity Low_complexity 2 62 0 2 1390 1020 89 0 37 chr5 105529925 105530112 -47007147 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2 1390 204 40 0 0 chr5 105530132 105530157 -47007102 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 2 1390 251 278 105 7 chr5 105530201 105530353 -47006906 + L1MA8 LINE L1 5874 6040 -251 2 1390 518 288 67 25 chr5 105530426 105530965 -47006294 + L1M3 LINE L1 5075 5646 -666 2 1390 723 273 95 4 chr5 105530967 105531210 -47006049 + MTEa LTR MaLR 3 267 -112 2 1390 261 0 0 0 chr5 105531251 105531280 -47005979 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1390 180 0 0 0 chr5 105531370 105531390 -47005869 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1390 1499 162 34 15 chr5 105531422 105531691 -47005568 + Lx LINE L1 6348 6621 -33 3 1390 392 37 0 18 chr5 105531691 105531746 -47005513 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 3 1390 457 307 9 32 chr5 105531818 105532022 -47005237 + B3A SINE B2 2 193 -2 3 1390 801 137 0 0 chr5 105533647 105533778 -47003481 + (GA)n Simple_repeat Simple_repeat 2 132 0 3 1390 690 13 0 0 chr5 105533791 105533870 -47003389 + (GGGAA)n Simple_repeat Simple_repeat 2 80 0 3 1390 528 345 28 19 chr5 105534119 105534332 -47002927 - B3 SINE B2 0 216 2 3 1390 514 293 82 14 chr5 105535595 105535889 -47001370 + L1MB4 LINE L1 5088 5401 -745 3 1390 25 31 0 0 chr5 105535914 105535946 -47001313 + AT_rich Low_complexity Low_complexity 1 32 0 3 1390 6044 60 1 0 chr5 105536112 105536859 -47000400 + L1Md_F2 LINE L1 4839 5586 -297 4 1390 7951 60 10 3 chr5 105536859 105537846 -46999413 + L1Md_F2 LINE L1 5587 6580 -2 4 1390 339 347 23 0 chr5 105537873 105538046 -46999213 - MER57F LTR ERV1 -247 189 13 4 1390 359 316 49 54 chr5 105538061 105538467 -46998792 + L1MB4 LINE L1 5409 5826 -354 3 1390 468 0 0 0 chr5 105539334 105539386 -46997873 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1390 1237 185 35 79 chr5 105539746 105540175 -46997084 + RMER17C LTR ERVK 1 410 0 4 1390 1919 120 9 51 chr5 105541061 105541394 -46995865 + ORR1A2 LTR MaLR 1 319 -8 4 1390 249 302 45 51 chr5 105542289 105542350 -46994909 - Lx9 LINE L1 -195 7449 7387 4 1390 2687 28 31 0 chr5 105542350 105542667 -46994592 + IAPLTR2b LTR ERVK 1 327 0 4 1390 249 302 45 51 chr5 105542667 105542762 -46994497 - Lx9 LINE L1 -258 7386 7294 4 1390 24 67 0 0 chr5 105545230 105545275 -46991984 + AT_rich Low_complexity Low_complexity 1 45 0 4 1390 887 289 60 28 chr5 105545322 105545674 -46991585 + Lx8 LINE L1 7087 7449 -24 4 1390 362 306 89 94 chr5 105545739 105545930 -46991329 - B3A SINE B2 0 198 9 4 1390 26 30 0 0 chr5 105546115 105546148 -46991111 + AT_rich Low_complexity Low_complexity 1 33 0 5 1390 646 316 84 28 chr5 105546714 105547077 -46990182 - MTE2b LTR MaLR -2 377 21 5 1390 252 217 16 16 chr5 105549646 105549707 -46987552 + ID SINE ID 24 84 -140 5 1390 236 250 0 0 chr5 105551175 105551231 -46986028 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1390 229 265 29 0 chr5 105552716 105552784 -46984475 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1390 349 326 70 35 chr5 105552789 105553018 -46984241 - B4A SINE B4 -54 238 2 5 1390 357 278 0 30 chr5 105553228 105553328 -46983931 + B1F1 SINE Alu 53 149 0 5 1390 217 233 0 0 chr5 105553328 105553388 -46983871 + A-rich Low_complexity Low_complexity 1 60 0 5 1390 183 80 0 0 chr5 105553388 105553413 -46983846 + (GGGA)n Simple_repeat Simple_repeat 4 28 0 5 1390 246 302 15 58 chr5 105553432 105553569 -46983690 + B1_Mur1 SINE Alu 18 148 -1 5 1390 320 241 62 0 chr5 105554003 105554148 -46983111 + (CACCC)n Simple_repeat Simple_repeat 1 154 0 6 1390 565 286 232 11 chr5 105554800 105555084 -46982175 + L1_Mur3 LINE L1 4911 5257 -623 6 1390 913 189 0 0 chr5 105555085 105555249 -46982010 - Lx LINE L1 -494 6160 5997 6 1390 2457 164 42 4 chr5 105555249 105555720 -46981539 + Lx LINE L1 6161 6649 -5 6 1390 303 370 0 46 chr5 105555720 105555742 -46981517 - L1Md_F2 LINE L1 -576 6006 5989 6 1390 257 227 22 43 chr5 105555741 105555833 -46981426 + L1_Mur3 LINE L1 5264 5353 -527 6 1390 1316 153 43 9 chr5 105555954 105556398 -46980861 + L1_Mur2 LINE L1 893 1406 -4471 6 1390 11603 174 43 3 chr5 105556398 105558647 -46978612 + L1_Mur2 LINE L1 3488 5826 -51 6 1390 1049 220 13 13 chr5 105558647 105558882 -46978377 - RLTR33 LTR ERVK 0 678 444 6 1390 1665 179 12 6 chr5 105558879 105559205 -46978054 + RMER20B LTR ERVK 44 371 -256 6 1390 852 202 67 89 chr5 105559222 105559504 -46977755 + RMER20B LTR ERVK 352 627 0 6 1390 609 276 72 4 chr5 105559735 105559972 -46977287 + L1M2 LINE L1 4764 5016 -1127 6 1390 814 166 6 6 chr5 105560145 105560321 -46976938 + GA-rich Low_complexity Low_complexity 1 176 0 6 1390 412 186 28 23 chr5 105560357 105560533 -46976726 + GA-rich Low_complexity Low_complexity 3 179 0 6 1390 789 154 14 31 chr5 105560556 105560890 -46976369 + GA-rich Low_complexity Low_complexity 1 328 0 6 1390 303 261 70 28 chr5 105560928 105561070 -46976189 + L1MA6 LINE L1 5812 5959 -341 6 1390 552 305 61 22 chr5 105561197 105561732 -46975527 + L1M2 LINE L1 5083 5646 -666 6 1390 660 293 90 4 chr5 105561734 105561967 -46975292 + MTEa LTR MaLR 3 255 -124 7 1390 380 243 58 22 chr5 105562006 105562145 -46975114 + RLTR15 LTR ERVK 33 176 -183 7 1390 383 241 68 49 chr5 105562178 105562383 -46974876 + RLTR15 LTR ERVK 133 341 -18 7 1390 203 125 25 0 chr5 105562452 105562492 -46974767 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7 1390 1522 168 34 10 chr5 105562518 105562812 -46974447 + Lx LINE L1 6348 6648 -6 7 1390 551 211 80 7 chr5 105562908 105563087 -46974172 + B3A SINE B2 11 214 -2 7 1390 241 337 72 0 chr5 105563237 105563320 -46973939 + LTR16A LTR ERVL 3 91 -360 7 1390 1429 61 15 5 chr5 105563430 105563628 -46973631 + L1_Mus3 LINE L1 6438 6637 -1 7 1390 549 0 0 0 chr5 105564914 105564975 -46972284 + (GAAA)n Simple_repeat Simple_repeat 1 61 0 7 1390 189 26 25 50 chr5 105564993 105565033 -46972226 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 7 1390 200 233 0 0 chr5 105565112 105565155 -46972104 + A-rich Low_complexity Low_complexity 1 43 0 7 1390 499 320 32 73 chr5 105565283 105565502 -46971757 - B3 SINE B2 -5 211 2 8 1390 433 278 88 37 chr5 105566650 105566945 -46970314 + L1M4 LINE L1 5088 5397 -749 8 1390 26 0 0 0 chr5 105566966 105566992 -46970267 + AT_rich Low_complexity Low_complexity 1 26 0 8 1390 258 357 37 11 chr5 105567148 105567335 -46969924 - MER57F LTR ERV1 -217 219 28 8 1390 226 298 147 14 chr5 105567578 105567721 -46969538 + L1M4 LINE L1 5667 5828 -352 8 1390 510 31 0 0 chr5 105567982 105568046 -46969213 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1390 396 40 0 0 chr5 105568610 105568660 -46968599 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1390 204 125 0 0 chr5 105569026 105569058 -46968201 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 8 1390 990 224 18 48 chr5 105569059 105569396 -46967863 + RMER17C LTR ERVK 84 410 0 8 1390 588 289 57 17 chr5 105570243 105570419 -46966840 - B4A SINE B4 -105 187 5 8 1390 975 56 8 0 chr5 105570426 105570551 -46966708 - L1_Mus3 LINE L1 -802 5836 5711 8 1390 294 169 143 12 chr5 105570976 105571060 -46966199 - RMER17C LTR ERVK 0 410 316 9 1390 1277 225 40 33 chr5 105571079 105571478 -46965781 - RMER17C LTR ERVK 0 410 9 9 1390 329 195 8 41 chr5 105571743 105571866 -46965393 + CT-rich Low_complexity Low_complexity 3 121 0 9 1390 278 236 11 19 chr5 105571900 105572164 -46965095 + (TCTCTG)n Simple_repeat Simple_repeat 1 261 0 9 1390 2923 221 71 73 chr5 105572384 105573259 -46964000 + Lx7 LINE L1 6612 7484 -212 9 1390 437 90 15 0 chr5 105573259 105573326 -46963933 + (TTCTC)n Simple_repeat Simple_repeat 1 68 0 9 1390 265 336 73 8 chr5 105574423 105574546 -46962713 + B4A SINE B4 1 131 -161 9 1390 241 233 17 0 chr5 105574699 105574759 -46962500 + GA-rich Low_complexity Low_complexity 2 62 0 9 1390 225 139 0 44 chr5 105575227 105575272 -46961987 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 9 1390 363 297 0 17 chr5 105575313 105575433 -46961826 + (CA)n Simple_repeat Simple_repeat 1 118 0 9 1390 2692 113 2 17 chr5 105575543 105575956 -46961303 + RLTR9E LTR ERVK 3 409 0 1 1390 1654 37 0 0 chr5 105576380 105576571 -46960688 + B2_Mm1a SINE B2 2 192 -1 1 1390 304 244 15 92 chr5 105576836 105576967 -46960292 - Lx8 LINE L1 -197 7276 7156 1 1390 466 338 43 14 chr5 105577241 105577520 -46959739 + MLT1A0 LTR MaLR 72 358 -7 1 1390 264 296 122 49 chr5 105577641 105577886 -46959373 + Lx8 LINE L1 7127 7389 -84 1 1390 593 207 47 22 chr5 105578179 105578358 -46958901 + B3 SINE B2 9 180 -15 1 1390 1445 199 32 15 chr5 105578554 105578896 -46958363 + ORR1D1 LTR MaLR 27 374 0 1 1390 1557 53 0 0 chr5 105578996 105579185 -46958074 - B2_Mm1t SINE B2 -3 190 2 1 1390 2047 117 9 0 chr5 105579536 105579852 -46957407 + ORR1A2 LTR MaLR 1 319 -8 1 1390 315 304 83 4 chr5 105580752 105580911 -46956348 - Lx9 LINE L1 -213 7431 7173 1 1390 432 37 0 0 chr5 105582078 105582132 -46955127 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1390 6522 112 36 14 chr5 105582845 105583932 -46953327 - RLTR13D3 LTR ERVK -3 1111 1 1 1390 21 71 0 0 chr5 105584533 105584575 -46952684 + AT_rich Low_complexity Low_complexity 1 42 0 1 1390 789 286 117 42 chr5 105584583 105584969 -46952290 + Lx8 LINE L1 7034 7448 -25 1 1390 349 308 123 0 chr5 105585097 105585227 -46952032 - B3A SINE B2 -44 154 9 1 1390 1893 68 36 0 chr5 105585456 105585706 -46951553 - L1_Mus1 LINE L1 0 6567 6309 1 1390 23 0 0 0 chr5 105585706 105585729 -46951530 + AT_rich Low_complexity Low_complexity 1 23 0 1 1390 652 291 72 80 chr5 105586280 105586642 -46950617 - MTE2b LTR MaLR -12 367 9 1 1390 357 226 0 0 chr5 105590767 105590851 -46946408 + (CA)n Simple_repeat Simple_repeat 2 85 0 1 1390 1126 90 0 0 chr5 105591358 105591503 -46945756 - B1_Mm SINE Alu 0 147 3 1 1390 23 33 0 0 chr5 105591639 105591669 -46945590 + AT_rich Low_complexity Low_complexity 1 30 0 1 1390 338 33 49 16 chr5 105592257 105592318 -46944941 + (CAAA)n Simple_repeat Simple_repeat 4 66 0 1 1390 231 185 37 0 chr5 105592552 105592606 -46944653 + (TATG)n Simple_repeat Simple_repeat 4 59 0 1 1390 373 330 57 22 chr5 105592622 105592851 -46944408 - B4A SINE B4 -54 238 2 1 1390 384 241 0 22 chr5 105593058 105593147 -46944112 + B1F1 SINE Alu 55 141 -8 1 1390 656 145 0 8 chr5 105593162 105593280 -46943979 + GA-rich Low_complexity Low_complexity 1 117 0 1 1390 440 244 21 49 chr5 105593287 105593429 -46943830 + B1_Mur1 SINE Alu 9 146 -3 1 1390 270 270 20 10 chr5 105593824 105593925 -46943334 + L1VL1 LINE L1 2 103 -6319 1 1390 33640 75 1 8 chr5 105593913 105599280 -46937979 + L1Md_F2 LINE L1 301 5586 -297 1 1390 7861 49 19 4 chr5 105599281 105600260 -46936999 + L1Md_F2 LINE L1 5588 6581 -1 1 1390 665 241 25 25 chr5 105601337 105601533 -46935726 + L1_Mur3 LINE L1 4933 5128 -752 1 1390 216 0 0 0 chr5 105601591 105601615 -46935644 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1390 1019 169 0 0 chr5 105601620 105601786 -46935473 - Lx LINE L1 -494 6160 5995 1 1390 2204 185 60 13 chr5 105601784 105602250 -46935009 + Lx LINE L1 6161 6648 -6 1 1390 295 199 8 106 chr5 105602244 105602368 -46934891 + L1_Mur3 LINE L1 5247 5393 -787 1 1390 1212 176 3 8 chr5 105602481 105602931 -46934328 + Lx5 LINE L1 889 1406 -4471 1 1390 11018 170 36 5 chr5 105602931 105604979 -46932280 + Lx5 LINE L1 3488 5598 -279 1 1390 3364 149 18 21 chr5 105604980 105605311 -46931948 - RLTR33 LTR ERVK -64 614 296 1 1390 4939 123 60 48 chr5 105605311 105606206 -46931053 + RMER17A2 LTR ERVK 1 906 0 1 1390 3364 149 18 21 chr5 105606206 105606490 -46930769 - RLTR33 LTR ERVK -383 295 1 1 1390 6061 172 34 68 chr5 105606674 105607938 -46929321 + Lx5 LINE L1 5827 7047 -3 1 1390 280 323 0 0 chr5 105607955 105608048 -46929211 + L1_Mur3 LINE L1 5374 5466 -414 1 1390 265 233 138 11 chr5 105608055 105608142 -46929117 + Lx7 LINE L1 7057 7154 -542 1 1390 2994 153 9 24 chr5 105608276 105608824 -46928435 + RLTR1D LTR ERV1 50 589 -16 1 1390 571 170 106 12 chr5 105608835 105608996 -46928263 + RMER17B LTR ERVK 208 383 -575 1 1390 994 87 4 36 chr5 105609106 105609379 -46927880 + (GGAA)n Simple_repeat Simple_repeat 1 264 0 1 1390 265 271 105 7 chr5 105609423 105609575 -46927684 + L1MA8 LINE L1 5874 6040 -251 1 1390 323 217 45 36 chr5 105609648 105609758 -46927501 + L1M3 LINE L1 5075 5185 -955 1 1390 234 0 0 0 chr5 105609785 105609811 -46927448 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1390 1430 180 30 11 chr5 105609844 105610113 -46927146 + Lx LINE L1 6348 6621 -33 1 1390 308 64 0 21 chr5 105610113 105610161 -46927098 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 1 1390 491 285 9 34 chr5 105610231 105610436 -46926823 + B3A SINE B2 2 193 -2 1 1390 374 318 22 60 chr5 105611337 105611521 -46925738 + ORR1E LTR MaLR 12 188 -171 1 1390 580 0 0 0 chr5 105611812 105611875 -46925384 - L1_Mm LINE L1 -651 5232 5170 1 1390 1721 55 0 17 chr5 105611875 105612115 -46925144 - LTRIS2 LTR ERV1 -324 240 5 1 1390 3493 72 4 15 chr5 105612117 105612198 -46925061 + L1_Mus1 LINE L1 6111 6192 -375 1 1390 1593 151 12 81 chr5 105612198 105612544 -46924715 - RLTRETN_Mm LTR ERVK 0 322 1 1 1390 3493 72 4 15 chr5 105612544 105612924 -46924335 + L1_Mus1 LINE L1 6193 6567 0 1 1390 892 139 19 12 chr5 105612927 105613087 -46924172 + RMER17C-int LTR ERVK 1346 1506 -1732 1 1390 637 256 53 34 chr5 105613943 105614149 -46923110 - B3 SINE B2 -2 214 5 1 1390 516 105 0 0 chr5 105614270 105614346 -46922913 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 1 1390 633 49 0 0 chr5 105614407 105614488 -46922771 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 1 1390 656 293 52 19 chr5 105615491 105615703 -46921556 + B4A SINE B4 1 219 -73 1 1390 738 60 0 0 chr5 105615741 105615841 -46921418 + (CA)n Simple_repeat Simple_repeat 1 100 0 1 1390 288 0 0 0 chr5 105615841 105615873 -46921386 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1390 223 214 18 18 chr5 105616434 105616491 -46920768 + GA-rich Low_complexity Low_complexity 1 57 0 1 1390 3526 331 30 39 chr5 105616876 105618326 -46918933 - RodERV21-int LTR ERV1 -204 4787 3331 1 1390 3097 86 58 19 chr5 105618326 105618790 -46918469 - RLTR45 LTR ERVK 0 482 1 1 1390 3526 331 30 39 chr5 105618790 105619232 -46918027 - RodERV21-int LTR ERV1 -1661 3330 2911 1 1390 295 202 21 56 chr5 105619782 105619895 -46917364 - MER52-int LTR ERV1 -1319 5772 5671 1 1390 330 308 57 45 chr5 105620268 105620594 -46916665 - RodERV21-int LTR ERV1 -3339 4868 4664 1 1390 637 299 48 71 chr5 105621329 105621851 -46915408 - RodERV21-int LTR ERV1 -2986 4105 3596 1 1390 5912 272 23 36 chr5 105621980 105623611 -46913648 - RodERV21-int LTR ERV1 -2273 2718 1110 1 1390 793 286 35 53 chr5 105623692 105624032 -46913227 - RodERV21-int LTR ERV1 -3913 1078 745 1 1390 4215 148 61 30 chr5 105624032 105624911 -46912348 + RLTR13D6 LTR ERVK 1 883 -19 1 1390 312 332 29 63 chr5 105624911 105625117 -46912142 - RMER17C-int LTR ERVK -2714 524 326 1 1390 320 24 0 0 chr5 105625740 105625782 -46911477 + RLTR10B2 LTR ERVK 1 42 -250 1 1390 1927 78 84 39 chr5 105625818 105626151 -46911108 + RLTR10B2 LTR ERVK 18 365 0 1 1390 1292 205 89 41 chr5 105626702 105627093 -46910166 - RMER17C LTR ERVK 0 410 1 1 1390 470 332 64 40 chr5 105628226 105628649 -46908610 - L1MB5 LINE L1 -333 5841 5409 1 1390 417 343 67 51 chr5 105628668 105629058 -46908201 + MER57F LTR ERV1 17 412 -24 1 1390 493 291 73 30 chr5 105629072 105629373 -46907886 - L1MB5 LINE L1 -745 5401 5088 1 1390 584 337 24 5 chr5 105630652 105630858 -46906401 + B3 SINE B2 2 211 -5 1 1390 7167 20 0 1 chr5 105630986 105631795 -46905464 + L1Md_A LINE L1 5775 6582 0 1 1390 2272 62 56 0 chr5 105631800 105632124 -46905135 + LTRIS2 LTR ERV1 223 564 0 1 1390 25922 112 109 0 chr5 105632124 105637195 -46900064 - L1_Mus1 LINE L1 -453 6114 453 1 1390 2459 248 17 84 chr5 105637427 105637758 -46899501 + Lx7 LINE L1 6635 6909 -787 1 1390 1231 48 0 0 chr5 105637758 105637904 -46899355 - B1_Mm SINE Alu 0 147 2 1 1390 2459 248 17 84 chr5 105637904 105638337 -46898922 + Lx7 LINE L1 6910 7348 -348 1 1390 339 63 15 31 chr5 105638412 105638477 -46898782 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1390 945 71 12 23 chr5 105638488 105638661 -46898598 + (TG)n Simple_repeat Simple_repeat 1 171 0 1 1390 294 270 191 48 chr5 105638719 105638929 -46898330 + Lx8 LINE L1 7175 7414 -59 1 1390 560 234 189 0 chr5 105639200 105639375 -46897884 + B3 SINE B2 9 216 0 1 1390 1567 158 38 35 chr5 105639575 105639922 -46897337 + ORR1D1 LTR MaLR 27 374 0 1 1390 380 189 11 0 chr5 105640368 105640458 -46896801 + ORR1A2 LTR MaLR 1 91 -236 1 1390 1668 132 4 2 chr5 105640485 105640792 -46896467 + ORR1A2 LTR MaLR 28 332 -14 1 1390 315 326 35 7 chr5 105641707 105641849 -46895410 - Lx9 LINE L1 -214 7430 7285 1 1390 554 28 14 0 chr5 105642958 105643030 -46894229 + (TG)n Simple_repeat Simple_repeat 1 73 0 1 1390 378 0 0 0 chr5 105643031 105643073 -46894186 + (ACTG)n Simple_repeat Simple_repeat 2 43 0 1 1391 874 304 59 20 chr5 105644427 105644783 -46892476 + Lx8 LINE L1 7034 7403 -70 1 1391 314 288 153 0 chr5 105644959 105645070 -46892189 - B3A SINE B2 -62 136 9 1 1391 644 289 67 66 chr5 105645809 105646184 -46891075 - MTE2b LTR MaLR -2 368 6 1 1391 225 295 16 16 chr5 105648656 105648718 -46888541 + ID SINE ID 24 85 -139 1 1391 423 106 0 0 chr5 105650218 105650284 -46886975 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1391 210 220 34 0 chr5 105651687 105651746 -46885513 + (TATG)n Simple_repeat Simple_repeat 4 64 0 1 1391 333 344 56 25 chr5 105651762 105651959 -46885300 - B4A SINE B4 -54 238 36 1 1391 624 50 0 0 chr5 105652280 105652360 -46884899 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 1 1391 441 250 21 49 chr5 105652372 105652515 -46884744 + B1_Mur1 SINE Alu 9 147 -2 1 1391 211 318 0 137 chr5 105653852 105653954 -46883305 + PB1 SINE Alu 22 109 -18 1 1391 548 286 20 15 chr5 105653956 105654151 -46883108 + L1_Mur3 LINE L1 4933 5128 -752 1 1391 289 240 9 9 chr5 105654139 105654244 -46883015 + L1_Rod LINE L1 5145 5249 -598 1 1391 821 182 25 6 chr5 105654243 105654403 -46882856 - Lx LINE L1 -495 6159 5997 1 1391 2931 124 10 40 chr5 105654403 105654905 -46882354 + Lx LINE L1 6161 6647 -7 1 1391 21 36 0 0 chr5 105654908 105654936 -46882323 + AT_rich Low_complexity Low_complexity 1 28 0 1 1391 5788 203 64 16 chr5 105655136 105656829 -46880430 + L1_Mur3 LINE L1 3442 4807 -1070 1 1391 12108 167 30 12 chr5 105656868 105659137 -46878122 + Lx5 LINE L1 3488 5796 -81 1 1391 4922 29 7 0 chr5 105659108 105659696 -46877563 - L1_Mm LINE L1 -2246 3637 3046 2 1391 1737 68 0 0 chr5 105659696 105659916 -46877343 + L1Md_T LINE L1 6363 6582 0 2 1391 315 0 0 0 chr5 105659930 105659965 -46877294 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1391 247 91 45 0 chr5 105659965 105660009 -46877250 + Lx5 LINE L1 5787 5832 -1218 1 1391 891 177 146 10 chr5 105660009 105660214 -46877045 - RLTR33 LTR ERVK 0 678 446 2 1391 2117 194 19 113 chr5 105660248 105660883 -46876376 + RMER20B LTR ERVK 52 626 -1 2 1391 258 200 18 0 chr5 105660915 105660970 -46876289 + L1M3 LINE L1 4713 4768 -1372 2 1391 23 0 0 0 chr5 105660994 105661017 -46876242 + AT_rich Low_complexity Low_complexity 1 23 0 2 1391 1078 116 0 0 chr5 105661017 105661164 -46876095 - B1_Mus1 SINE Alu 0 148 2 2 1391 684 257 69 4 chr5 105661282 105661528 -46875731 + L1M3 LINE L1 4761 5022 -1118 2 1391 210 224 0 0 chr5 105661689 105661738 -46875521 + GA-rich Low_complexity Low_complexity 1 49 0 2 1391 803 155 23 0 chr5 105661754 105661928 -46875331 + GA-rich Low_complexity Low_complexity 1 178 0 2 1391 270 128 0 0 chr5 105661939 105661978 -46875281 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 2 1391 301 306 63 13 chr5 105662022 105662181 -46875078 + L1MA8 LINE L1 5874 6040 -251 2 1391 462 293 72 38 chr5 105662197 105662692 -46874567 + L1M3 LINE L1 5017 5541 -771 2 1391 1059 142 0 0 chr5 105663826 105664002 -46873257 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 2 1391 335 222 17 17 chr5 105664012 105664131 -46873128 + GA-rich Low_complexity Low_complexity 2 120 0 2 1391 190 42 39 59 chr5 105664135 105664186 -46873073 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 1391 596 335 19 10 chr5 105664399 105664607 -46872652 - B3 SINE B2 -5 211 2 2 1391 324 300 62 77 chr5 105665886 105665974 -46871285 + L1MB5 LINE L1 5078 5166 -974 2 1391 6509 7 0 0 chr5 105665974 105666684 -46870575 + L1Md_T LINE L1 5873 6582 0 2 1391 383 300 62 77 chr5 105666684 105666920 -46870339 + L1MB5 LINE L1 5165 5403 -743 2 1391 376 343 30 10 chr5 105667134 105667337 -46869922 - MER57F LTR ERV1 -217 219 13 2 1391 416 312 81 57 chr5 105667357 105667775 -46869484 + L1MB5 LINE L1 5414 5841 -333 2 1391 504 0 0 0 chr5 105668597 105668653 -46868606 + (CA)n Simple_repeat Simple_repeat 1 56 0 2 1391 1305 202 87 43 chr5 105669040 105669433 -46867826 + RMER17C LTR ERVK 1 410 0 2 1391 342 326 29 63 chr5 105670605 105670811 -46866448 + RMER17C-int LTR ERVK 326 524 -2714 2 1391 4396 133 61 30 chr5 105670811 105671689 -46865570 - RLTR13D6 LTR ERVK -19 883 1 2 1391 838 279 35 53 chr5 105671689 105672029 -46865230 + RodERV21-int LTR ERV1 745 1078 -3913 2 1391 5887 266 25 38 chr5 105672110 105673741 -46863518 + RodERV21-int LTR ERV1 1110 2718 -2273 2 1391 418 299 54 99 chr5 105673870 105674404 -46862855 + RodERV21-int LTR ERV1 3596 4105 -2986 2 1391 335 322 28 28 chr5 105675137 105675466 -46861793 + RodERV21-int LTR ERV1 4664 4836 -3371 2 1391 295 202 21 56 chr5 105675839 105675952 -46861307 + RodERV21-int LTR ERV1 5671 5772 -1319 2 1391 3645 334 30 38 chr5 105676503 105676945 -46860314 + RodERV21-int LTR ERV1 2911 3330 -1661 2 1391 2996 92 59 40 chr5 105676945 105677418 -46859841 + RLTR45 LTR ERVK 1 482 0 2 1391 3645 334 30 38 chr5 105677418 105678868 -46858391 + RodERV21-int LTR ERV1 3331 4788 -203 2 1391 594 126 0 0 chr5 105679886 105679989 -46857270 + (TG)n Simple_repeat Simple_repeat 1 103 0 2 1391 682 297 47 14 chr5 105680027 105680239 -46857020 - B4A SINE B4 -73 219 1 2 1391 1228 0 47 0 chr5 105681229 105681401 -46855858 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1391 450 0 0 0 chr5 105681463 105681513 -46855746 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2 1391 703 244 5 63 chr5 105681634 105681840 -46855419 + B3A SINE B2 5 198 0 2 1391 911 139 19 12 chr5 105682711 105682871 -46854388 - RMER17C-int LTR ERVK -1732 1506 1346 2 1391 32557 99 15 1 chr5 105682874 105688898 -46848361 - L1_Mus1 LINE L1 0 6567 453 2 1391 2406 252 17 84 chr5 105689130 105689461 -46847798 + Lx7 LINE L1 6635 6909 -787 2 1391 1183 68 0 0 chr5 105689461 105689607 -46847652 - B1_Mm SINE Alu 0 147 2 2 1391 2406 252 17 84 chr5 105689607 105690040 -46847219 + Lx7 LINE L1 6910 7348 -348 2 1391 888 90 29 29 chr5 105690115 105690634 -46846625 + (TG)n Simple_repeat Simple_repeat 1 518 0 2 1391 688 97 16 49 chr5 105690649 105690834 -46846425 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1391 252 0 0 0 chr5 105690848 105690876 -46846383 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1391 218 160 20 0 chr5 105690887 105690937 -46846322 + T-rich Low_complexity Low_complexity 5 55 0 2 1391 291 341 65 8 chr5 105692022 105692146 -46845113 + B4A SINE B4 1 131 -161 2 1391 256 324 0 19 chr5 105692710 105692814 -46844445 + (CA)n Simple_repeat Simple_repeat 1 102 0 2 1391 272 292 50 78 chr5 105693688 105693829 -46843430 - Lx8 LINE L1 -197 7276 7140 2 1391 265 342 37 26 chr5 105694183 105694372 -46842887 + MLT1A0 LTR MaLR 168 358 -7 2 1391 336 289 227 31 chr5 105694491 105694777 -46842482 + Lx8 LINE L1 7126 7467 -6 2 1391 591 224 190 0 chr5 105695021 105695195 -46842064 + B3 SINE B2 9 215 -1 2 1391 1495 170 38 35 chr5 105695395 105695742 -46841517 + ORR1D1 LTR MaLR 27 374 0 2 1391 350 200 11 0 chr5 105696187 105696277 -46840982 + ORR1A2 LTR MaLR 1 91 -236 2 1391 1654 140 4 2 chr5 105696304 105696611 -46840648 + ORR1A2 LTR MaLR 28 332 -14 2 1391 343 325 33 7 chr5 105697514 105697666 -46839593 - Lx9 LINE L1 -204 7440 7285 2 1391 450 0 0 0 chr5 105698809 105698859 -46838400 + (ACTG)n Simple_repeat Simple_repeat 2 51 0 2 1391 874 304 59 20 chr5 105700224 105700580 -46836679 + Lx8 LINE L1 7034 7403 -70 2 1391 314 288 153 0 chr5 105700756 105700867 -46836392 - B3A SINE B2 -62 136 9 2 1391 653 282 67 66 chr5 105701606 105701981 -46835278 - MTE2b LTR MaLR -2 368 6 2 1391 244 233 16 16 chr5 105704457 105704518 -46832741 + ID SINE ID 24 84 -140 2 1391 435 106 0 0 chr5 105706015 105706081 -46831178 + (CA)n Simple_repeat Simple_repeat 1 66 0 2 1391 181 119 48 0 chr5 105707489 105707531 -46829728 + (TATG)n Simple_repeat Simple_repeat 4 47 0 2 1391 291 363 51 20 chr5 105707559 105707756 -46829503 - B4A SINE B4 -54 238 36 2 1391 639 60 0 0 chr5 105708077 105708161 -46829098 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 2 1391 441 250 21 49 chr5 105708173 105708316 -46828943 + B1_Mur1 SINE Alu 9 147 -2 2 1391 542 281 38 14 chr5 105709738 105709951 -46827308 + L1_Mur3 LINE L1 4911 5128 -752 2 1391 250 292 0 0 chr5 105709939 105710011 -46827248 + L1_Rod LINE L1 5145 5216 -631 2 1391 185 0 0 39 chr5 105710011 105710037 -46827222 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2 1391 845 184 25 0 chr5 105710037 105710195 -46827064 - Lx LINE L1 -496 6158 5997 2 1391 2971 124 14 28 chr5 105710195 105710691 -46826568 + Lx LINE L1 6161 6649 -5 2 1391 21 36 0 0 chr5 105710694 105710722 -46826537 + AT_rich Low_complexity Low_complexity 1 28 0 2 1391 5982 192 52 2 chr5 105710917 105712617 -46824642 + L1_Mur3 LINE L1 3442 4807 -1070 2 1391 11842 166 33 32 chr5 105712656 105714993 -46822266 + L1_Mur2 LINE L1 3488 5826 -51 2 1391 891 163 146 10 chr5 105714993 105715198 -46822061 - RLTR33 LTR ERVK 0 678 446 2 1391 2167 192 19 113 chr5 105715232 105715867 -46821392 + RMER20B LTR ERVK 52 626 -1 2 1391 258 200 18 0 chr5 105715899 105715954 -46821305 + L1M3 LINE L1 4713 4768 -1372 2 1391 21 0 0 0 chr5 105715978 105715999 -46821260 + AT_rich Low_complexity Low_complexity 1 21 0 2 1391 1074 109 0 20 chr5 105715999 105716149 -46821110 - B1_Mus1 SINE Alu 0 148 2 2 1391 641 259 72 4 chr5 105716267 105716504 -46820755 + L1M3 LINE L1 4761 5013 -1127 2 1391 832 177 11 0 chr5 105716672 105716847 -46820412 + GA-rich Low_complexity Low_complexity 4 180 0 2 1391 234 128 0 0 chr5 105716895 105716934 -46820325 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 2 1391 316 265 80 10 chr5 105716978 105717137 -46820122 + L1MA6 LINE L1 5874 6040 -251 2 1391 433 293 69 28 chr5 105717153 105717648 -46819611 + L1M3 LINE L1 5020 5541 -771 2 1391 374 335 22 39 chr5 105718102 105718282 -46818977 + ORR1E LTR MaLR 12 188 -171 2 1391 215 382 0 0 chr5 105718658 105718734 -46818525 + B1F2 SINE Alu 4 79 -70 2 1391 959 103 0 7 chr5 105718782 105718929 -46818330 + (GGAA)n Simple_repeat Simple_repeat 3 148 0 2 1391 296 161 0 16 chr5 105718929 105718992 -46818267 + GA-rich Low_complexity Low_complexity 4 65 0 2 1391 405 0 0 0 chr5 105719017 105719062 -46818197 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1391 617 330 19 10 chr5 105719285 105719493 -46817766 - B3 SINE B2 -5 211 2 2 1391 429 304 77 29 chr5 105720772 105721086 -46816173 + L1MB3 LINE L1 5078 5412 -888 2 1391 249 350 32 16 chr5 105721291 105721480 -46815779 - MER57F LTR ERV1 -217 219 28 2 1391 403 320 57 47 chr5 105721608 105721906 -46815353 + L1MB3 LINE L1 5529 5829 -354 2 1391 480 35 0 0 chr5 105722770 105722828 -46814431 + (GA)n Simple_repeat Simple_repeat 2 59 0 2 1391 1208 174 127 33 chr5 105723207 105723539 -46813720 + RMER17C LTR ERVK 1 363 -47 2 1391 2657 35 0 3 chr5 105723548 105723888 -46813371 + ORR1A1 LTR MaLR 8 346 0 2 1391 657 288 87 66 chr5 105724914 105725200 -46812059 - B4A SINE B4 0 292 1 2 1391 259 338 7 42 chr5 105726559 105726701 -46810558 - RMER12 LTR ERVK -490 832 696 2 1391 651 279 19 7 chr5 105726826 105727028 -46810231 + B3A SINE B2 6 210 -6 2 1391 208 290 0 16 chr5 105727891 105727954 -46809305 + GA-rich Low_complexity Low_complexity 1 62 0 2 1391 794 159 114 19 chr5 105728322 105728561 -46808698 + Lx7 LINE L1 7151 7614 -82 2 1391 1002 215 45 131 chr5 105729103 105729374 -46807885 - RMER17C LTR ERVK 0 410 169 2 1391 639 39 0 0 chr5 105729374 105729452 -46807807 + (GGA)n Simple_repeat Simple_repeat 1 78 0 2 1391 1002 215 45 131 chr5 105729452 105729629 -46807630 - RMER17C LTR ERVK -242 168 1 2 1391 2259 140 76 6 chr5 105729629 105730311 -46806948 - RMER17C-int LTR ERVK 0 3238 2509 2 1391 1907 270 106 75 chr5 105730306 105731589 -46805670 - RMER17C-int LTR ERVK -1915 1323 1 2 1391 2976 230 24 34 chr5 105732825 105733571 -46803688 + Lx7 LINE L1 6612 7350 -346 2 1391 230 200 0 18 chr5 105733606 105733662 -46803597 + T-rich Low_complexity Low_complexity 3 57 0 2 1391 222 314 80 32 chr5 105734750 105734875 -46802384 + B4A SINE B4 1 131 -161 2 1391 195 102 16 63 chr5 105735028 105735091 -46802168 + (CAGAGA)n Simple_repeat Simple_repeat 2 61 0 2 1391 520 97 0 0 chr5 105735244 105735316 -46801943 + RLTR13C2 LTR ERVK 1 72 -961 2 1391 245 35 0 0 chr5 105735317 105735346 -46801913 - L1_Mus1 LINE L1 -143 6424 6396 2 1391 672 95 0 0 chr5 105735347 105735452 -46801807 + L1_Mus1 LINE L1 6463 6567 0 2 1391 186 43 0 0 chr5 105735699 105735722 -46801537 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2 1391 3157 167 16 131 chr5 105735729 105736569 -46800690 + RLTR13C2 LTR ERVK 66 808 0 2 1391 296 258 7 19 chr5 105736836 105736990 -46800269 + (CA)n Simple_repeat Simple_repeat 1 152 0 2 1391 231 262 0 77 chr5 105737151 105737333 -46799926 + CT-rich Low_complexity Low_complexity 6 173 0 2 1391 361 301 88 47 chr5 105737863 105738034 -46799225 - Lx8 LINE L1 -148 7325 7148 2 1391 301 321 50 0 chr5 105738399 105738539 -46798720 + MLT1A0 LTR MaLR 168 314 -51 2 1391 5057 106 93 11 chr5 105738986 105739806 -46797453 + RMER17D LTR ERVK 1 887 -2 3 1391 560 222 193 0 chr5 105740046 105740217 -46797042 + B3 SINE B2 9 212 -4 3 1391 1347 181 82 24 chr5 105740421 105740750 -46796509 + ORR1D1 LTR MaLR 27 374 0 3 1391 2125 110 3 0 chr5 105741188 105741506 -46795753 + ORR1A2 LTR MaLR 1 319 -8 3 1391 433 292 37 0 chr5 105742379 105742540 -46794719 - Lx9 LINE L1 -195 7449 7283 3 1391 357 43 0 0 chr5 105743693 105743740 -46793519 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1391 35743 63 3 0 chr5 105743833 105749955 -46787304 - L1Md_F2 LINE L1 -2 6580 442 3 1391 1042 265 105 43 chr5 105750827 105751218 -46786041 + Lx8 LINE L1 7034 7448 -25 3 1391 378 259 143 0 chr5 105751364 105751476 -46785783 - B3A SINE B2 -62 136 9 3 1391 244 176 54 0 chr5 105751600 105751674 -46785585 + MER33 DNA MER1_type 158 235 -89 3 1391 617 296 66 72 chr5 105752220 105752583 -46784676 - MTE2b LTR MaLR -2 368 21 3 1391 257 250 15 15 chr5 105755171 105755236 -46782023 + ID SINE ID 24 88 -136 3 1391 214 171 0 0 chr5 105756727 105756762 -46780497 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1391 258 32 0 0 chr5 105757980 105758011 -46779248 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1391 208 111 44 0 chr5 105758246 105758291 -46778968 + (TATG)n Simple_repeat Simple_repeat 4 50 0 3 1391 257 267 59 10 chr5 105758319 105758421 -46778838 - B4A SINE B4 -54 238 132 3 1391 343 263 0 50 chr5 105758758 105758858 -46778401 + B1F2 SINE Alu 55 149 0 3 1391 600 164 0 0 chr5 105758891 105759001 -46778258 + GA-rich Low_complexity Low_complexity 4 113 0 3 1391 388 244 30 59 chr5 105759010 105759145 -46778114 + B1_Mur1 SINE Alu 16 146 -3 3 1391 646 242 16 8 chr5 105760637 105760906 -46776353 + L1_Mur3 LINE L1 4933 5243 -637 3 1391 1028 119 0 25 chr5 105760909 105761072 -46776187 - Lx LINE L1 -499 6155 5997 3 1391 2902 151 25 0 chr5 105761072 105761549 -46775710 + Lx LINE L1 6161 6649 -5 3 1391 228 214 14 41 chr5 105761549 105761622 -46775637 + L1_Mur3 LINE L1 5253 5323 -557 3 1391 1326 206 80 42 chr5 105761745 105762170 -46775089 + L1_Mur2 LINE L1 882 1322 -5764 3 1391 12069 164 47 4 chr5 105762188 105764431 -46772828 + L1_Mur2 LINE L1 3488 5826 -51 3 1391 1263 179 4 13 chr5 105764431 105764668 -46772591 - RLTR33 LTR ERVK 0 678 444 3 1391 2277 192 24 87 chr5 105764666 105765288 -46771971 + RMER20B LTR ERVK 45 627 0 3 1391 651 259 101 4 chr5 105765519 105765767 -46771492 + L1M2 LINE L1 4764 5035 -1108 3 1391 807 145 6 11 chr5 105765897 105766071 -46771188 + GA-rich Low_complexity Low_complexity 4 176 0 3 1391 361 96 19 0 chr5 105766073 105766125 -46771134 + (GA)n Simple_repeat Simple_repeat 1 53 0 3 1391 964 169 5 17 chr5 105766129 105766548 -46770711 + GA-rich Low_complexity Low_complexity 1 413 0 3 1391 1524 18 0 0 chr5 105766548 105766717 -46770542 + L1Md_A LINE L1 5418 5586 -297 3 1391 8718 27 0 1 chr5 105766717 105767714 -46769545 + L1Md_A LINE L1 5587 6582 0 3 1391 497 195 0 31 chr5 105767731 105767890 -46769369 + GA-rich Low_complexity Low_complexity 3 156 0 3 1391 314 196 0 35 chr5 105767905 105768021 -46769238 + GA-rich Low_complexity Low_complexity 4 115 0 3 1391 362 267 74 12 chr5 105768024 105768187 -46769072 + L1MA8 LINE L1 5814 5986 -305 3 1391 651 286 55 24 chr5 105768244 105768842 -46768417 + L1M2 LINE L1 5020 5646 -666 3 1391 614 275 161 0 chr5 105768844 105769062 -46768197 + MTEa LTR MaLR 3 255 -124 3 1391 370 237 65 29 chr5 105769101 105769240 -46768019 + RLTR15 LTR ERVK 33 176 -183 3 1391 411 231 68 49 chr5 105769273 105769478 -46767781 + RLTR15 LTR ERVK 133 341 -18 3 1391 269 155 17 0 chr5 105769545 105769603 -46767656 + (TTG)n Simple_repeat Simple_repeat 2 60 0 3 1391 1937 136 3 10 chr5 105769629 105769933 -46767326 + Lx2 LINE L1 6696 6997 0 3 1391 552 239 25 34 chr5 105770021 105770199 -46767060 + B3A SINE B2 2 173 -20 3 1391 342 0 0 0 chr5 105770819 105770857 -46766402 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1391 223 347 10 10 chr5 105771724 105771823 -46765436 + PB1D7 SINE Alu 4 102 -18 3 1391 501 62 0 0 chr5 105771854 105771919 -46765340 + (GGGA)n Simple_repeat Simple_repeat 4 68 0 3 1391 227 200 46 0 chr5 105771919 105771984 -46765275 + A-rich Low_complexity Low_complexity 5 72 0 3 1391 395 344 71 76 chr5 105772191 105772402 -46764857 - B3 SINE B2 -5 211 2 3 1391 463 296 61 20 chr5 105773540 105773831 -46763428 + L1MB3 LINE L1 5077 5383 -763 3 1391 28 0 0 0 chr5 105773869 105773897 -46763362 + AT_rich Low_complexity Low_complexity 1 28 0 3 1391 281 349 40 10 chr5 105774063 105774263 -46762996 - MER57F LTR ERV1 -214 222 17 3 1391 436 313 56 56 chr5 105774283 105774724 -46762535 + L1MB3 LINE L1 5410 5865 -297 3 1391 288 0 0 0 chr5 105774950 105774982 -46762277 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1392 565 168 15 60 chr5 105775935 105776068 -46761191 + RMER17C LTR ERVK 2 128 -282 3 1392 15428 86 18 2 chr5 105776068 105778868 -46758391 - L1_Mus1 LINE L1 -6 6561 3732 3 1392 939 210 49 35 chr5 105778868 105779154 -46758105 + RMER17C LTR ERVK 121 410 0 3 1392 2690 230 22 79 chr5 105780743 105781527 -46755732 + Lx7 LINE L1 6612 7350 -346 3 1392 219 226 41 7 chr5 105781527 105781617 -46755642 + T-rich Low_complexity Low_complexity 1 93 0 3 1392 305 282 81 37 chr5 105782740 105782876 -46754383 + B4 SINE B4 1 142 -150 3 1392 195 102 16 63 chr5 105783019 105783082 -46754177 + (CAGAGA)n Simple_repeat Simple_repeat 2 61 0 3 1392 3226 41 19 0 chr5 105783417 105783786 -46753473 - L1Md_F2 LINE L1 0 6582 6207 3 1392 514 207 12 17 chr5 105783944 105784116 -46753143 + (CA)n Simple_repeat Simple_repeat 2 172 0 3 1392 343 293 82 41 chr5 105784874 105785045 -46752214 - Lx8 LINE L1 -148 7325 7148 3 1392 1712 62 0 0 chr5 105785127 105785338 -46751921 + L1_Mus1 LINE L1 6117 6327 -240 3 1392 331 348 37 16 chr5 105785677 105785864 -46751395 + MLT1A0 LTR MaLR 168 358 -7 3 1392 377 322 90 28 chr5 105785986 105786197 -46751062 + Lx8 LINE L1 7129 7352 -121 3 1392 562 251 36 0 chr5 105786513 105786690 -46750569 + B3 SINE B2 9 195 -3 3 1392 1708 171 64 22 chr5 105786865 105787224 -46750035 + ORR1D1 LTR MaLR 1 374 0 3 1392 2313 103 0 0 chr5 105787660 105787979 -46749280 + ORR1A2 LTR MaLR 1 319 -8 3 1392 528 279 99 14 chr5 105788594 105788805 -46748454 + MYSERV-int LTR ERVK 1096 1324 -5226 3 1392 498 224 74 7 chr5 105788871 105789006 -46748253 + MYSERV-int LTR ERVK 4258 4401 -2149 3 1392 759 22 0 0 chr5 105789007 105789096 -46748163 + (GAAA)n Simple_repeat Simple_repeat 1 89 0 3 1392 6236 69 4 19 chr5 105789096 105789964 -46747295 + RLTR13A2 LTR ERVK 1 958 0 3 1392 48215 32 11 12 chr5 105789964 105793979 -46743280 + ETnERV3-int LTR ERVK 1 3978 -1830 3 1392 249 57 0 0 chr5 105793979 105794014 -46743245 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 3 1392 48215 32 11 12 chr5 105794014 105795800 -46741459 + ETnERV3-int LTR ERVK 3979 5793 -15 3 1392 6246 72 7 22 chr5 105795801 105796676 -46740583 + RLTR13A2 LTR ERVK 97 958 0 3 1392 304 119 17 17 chr5 105796677 105796737 -46740522 + GA-rich Low_complexity Low_complexity 2 61 0 3 1392 567 273 34 17 chr5 105796763 105796938 -46740321 + MYSERV-int LTR ERVK 4459 4636 -1914 3 1392 242 29 0 28 chr5 105796947 105796983 -46740276 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1392 849 38 9 0 chr5 105796983 105797089 -46740170 - B1_Mm SINE Alu -3 144 38 3 1392 441 262 0 18 chr5 105797116 105797225 -46740034 + MYSERV-int LTR ERVK 4661 4767 -1783 3 1392 435 63 0 0 chr5 105797266 105797329 -46739930 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 3 1392 682 265 12 78 chr5 105797332 105797590 -46739669 + MYSERV16_I-int LTR ERVK 500 740 -1586 3 1392 22930 75 7 9 chr5 105797620 105801671 -46735588 - L1Md_F2 LINE L1 0 7009 2996 3 1392 42223 4 0 0 chr5 105801683 105808037 -46729222 - L1Md_A LINE L1 0 6582 228 3 1392 8557 56 0 2 chr5 105808037 105809122 -46728137 - L1Md_F2 LINE L1 -2874 3009 1927 3 1392 365 235 60 87 chr5 105809123 105809272 -46727987 + MYSERV-int LTR ERVK 4979 5123 -1427 3 1392 404 272 31 100 chr5 105809279 105809502 -46727757 + RMER4A LTR ERVK 252 567 -18 3 1392 1173 37 30 0 chr5 105809526 105809660 -46727599 - B1_Mm SINE Alu -9 138 1 3 1392 1639 233 64 69 chr5 105809660 105810194 -46727065 + MYSERV-int LTR ERVK 5344 5874 -676 3 1392 826 174 7 14 chr5 105810268 105810408 -46726851 - B1_Mur1 SINE Alu 0 149 11 3 1392 379 303 41 90 chr5 105810278 105810423 -46726836 - B4 SINE B4 -74 218 81 3 1392 675 230 0 0 chr5 105810597 105810723 -46726536 + B3A SINE B2 1 126 -72 3 1392 613 306 31 25 chr5 105811558 105811719 -46725540 - RSINE1 SINE B4 0 165 4 3 1392 37041 68 3 13 chr5 105811820 105818169 -46719090 - L1Md_F2 LINE L1 -1 6581 301 3 1392 583 280 75 23 chr5 105818169 105818391 -46718868 - B3A SINE B2 -2 214 2 3 1392 1564 63 21 5 chr5 105818509 105818699 -46718560 - B2_Mm2 SINE B2 -2 193 1 3 1392 635 277 52 0 chr5 105818976 105819131 -46718128 + RSINE1 SINE B4 3 165 0 3 1392 351 0 0 0 chr5 105819300 105819339 -46717920 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1392 2875 173 2 14 chr5 105819345 105819832 -46717427 + Lx LINE L1 6165 6645 -9 3 1392 731 182 46 59 chr5 105819835 105819987 -46717272 + MTC LTR MaLR 220 369 -52 3 1392 2477 209 48 0 chr5 105819993 105820453 -46716806 - Lx6 LINE L1 -193 7267 6786 3 1392 325 220 30 126 chr5 105820483 105820618 -46716641 + L1MB2 LINE L1 5821 5942 -229 3 1392 1544 223 71 14 chr5 105820758 105821122 -46716137 - RMER19C LTR ERVK 0 611 227 3 1392 2209 118 3 21 chr5 105821122 105821460 -46715799 - RLTR8 LTR ERVK 0 365 34 3 1392 1070 194 30 50 chr5 105821469 105821778 -46715481 - RMER19C LTR ERVK -341 270 1 3 1392 6380 131 95 29 chr5 105821912 105822179 -46715080 - RLTR13D3 LTR ERVK 0 1114 851 3 1392 1318 48 0 0 chr5 105822179 105822326 -46714933 + B1_Mm SINE Alu 1 147 0 3 1392 6380 131 95 29 chr5 105822326 105822608 -46714651 - RLTR13D3 LTR ERVK -264 850 532 3 1392 1291 54 0 0 chr5 105822608 105822755 -46714504 - B1_Mm SINE Alu 0 147 1 3 1392 6380 131 95 29 chr5 105822755 105823249 -46714010 - RLTR13D3 LTR ERVK -583 531 1 3 1392 2612 142 20 2 chr5 105823779 105824183 -46713076 - MTC LTR MaLR -8 413 3 3 1392 299 303 45 92 chr5 105824701 105824924 -46712335 + MLT1F2 LTR MaLR 292 525 -44 3 1392 1151 193 64 0 chr5 105825190 105825392 -46711867 + B3 SINE B2 1 215 -1 3 1392 369 275 9 29 chr5 105825433 105825538 -46711721 - PB1D10 SINE Alu 0 117 15 3 1392 263 261 52 35 chr5 105826042 105826056 -46711203 - B2_Mm1a SINE B2 -76 117 1 3 1392 559 168 20 0 chr5 105826056 105826157 -46711102 - RSINE1 SINE B4 -61 104 2 3 1392 419 299 0 0 chr5 105826187 105826284 -46710975 + PB1D10 SINE Alu 2 98 -19 3 1392 567 53 0 0 chr5 105826308 105826383 -46710876 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 4 1392 198 0 0 0 chr5 105827902 105827924 -46709335 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1392 186 400 8 73 chr5 105828741 105828865 -46708394 + MIRm SINE MIR 161 276 0 4 1392 225 319 28 0 chr5 105828794 105828866 -46708393 + L2a LINE L2 3352 3425 -1 4 1392 759 221 116 21 chr5 105828872 105829062 -46708197 + B3 SINE B2 7 214 -2 4 1392 266 183 67 0 chr5 105829126 105829186 -46708073 - ORR1D1 LTR MaLR -306 68 5 4 1392 1107 221 207 6 chr5 105830248 105830581 -46706678 + MTD LTR MaLR 5 404 -15 4 1392 404 37 19 0 chr5 105831299 105831353 -46705906 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1392 420 71 0 0 chr5 105831353 105831409 -46705850 + (TA)n Simple_repeat Simple_repeat 1 56 0 4 1392 578 193 19 6 chr5 105831411 105831573 -46705686 + (CA)n Simple_repeat Simple_repeat 1 164 0 4 1392 501 298 94 21 chr5 105831580 105831772 -46705487 - ORR1E LTR MaLR -153 206 1 4 1392 500 243 82 14 chr5 105831923 105832069 -46705190 + RSINE1 SINE B4 4 159 -6 4 1392 258 239 0 0 chr5 105832407 105832478 -46704781 + (TATG)n Simple_repeat Simple_repeat 1 71 0 4 1392 213 280 0 0 chr5 105832567 105832685 -46704574 + (TG)n Simple_repeat Simple_repeat 1 118 0 4 1392 297 75 0 0 chr5 105833643 105833683 -46703576 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1392 407 286 50 0 chr5 105833689 105833808 -46703451 - RSINE1 SINE B4 -39 126 2 4 1392 924 92 235 0 chr5 105834684 105834837 -46702422 + B2_Mm2 SINE B2 2 190 -5 4 1392 426 248 86 0 chr5 105835251 105835356 -46701903 - B3A SINE B2 -82 116 3 4 1392 228 67 0 0 chr5 105835504 105835534 -46701725 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 4 1392 246 339 104 28 chr5 105836214 105836263 -46700996 + RMER17A LTR ERVK 364 412 -339 4 1392 378 0 0 0 chr5 105836263 105836305 -46700954 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1392 246 339 104 28 chr5 105836305 105836437 -46700822 + RMER17A LTR ERVK 413 559 -192 4 1392 279 298 39 55 chr5 105837549 105837677 -46699582 - B1F2 SINE Alu -22 127 2 4 1392 591 214 0 8 chr5 105837926 105838044 -46699215 - PB1D9 SINE Alu -2 118 2 4 1392 1838 154 67 12 chr5 105838252 105838580 -46698679 + ORR1B1 LTR MaLR 41 386 -8 4 1392 770 218 2 4 chr5 105839146 105839297 -46697962 + B1_Mus2 SINE Alu 2 150 0 4 1392 213 39 0 0 chr5 105839316 105839342 -46697917 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1392 579 315 136 30 chr5 105840648 105840979 -46696280 + MTEa LTR MaLR 13 378 -1 4 1392 273 284 243 10 chr5 105841131 105841234 -46696025 + B1_Mur2 SINE Alu 1 127 -22 4 1392 333 0 0 0 chr5 105841750 105841787 -46695472 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1392 255 183 141 18 chr5 105842793 105842867 -46694392 - MIR SINE MIR -120 156 79 4 1392 1186 115 66 0 chr5 105843036 105843219 -46694040 + B2_Mm2 SINE B2 1 195 0 4 1392 225 312 0 24 chr5 105843360 105843442 -46693817 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1392 519 277 163 0 chr5 105843450 105843591 -46693668 - B3A SINE B2 -22 176 13 4 1392 21 0 0 75 chr5 105844750 105844790 -46692469 + GC_rich Low_complexity Low_complexity 1 37 0 4 1392 28 61 0 0 chr5 105844863 105844912 -46692347 + GC_rich Low_complexity Low_complexity 1 49 0 4 1392 216 0 0 0 chr5 105845700 105845724 -46691535 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1392 252 297 65 65 chr5 105847165 105847273 -46689986 - RSINE1 SINE B4 0 165 58 4 1392 399 56 0 0 chr5 105848244 105848298 -46688961 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1392 3123 14 5 47 chr5 105848354 105848737 -46688522 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1392 29377 22 1 1 chr5 105848737 105852011 -46685248 - IAPEz-int LTR ERVK 0 6481 3210 4 1392 7384 71 122 36 chr5 105852010 105853208 -46684051 - IAPEz-int LTR ERVK -5168 1313 67 4 1392 1049 86 159 0 chr5 105853179 105853342 -46683917 - IAPEz-int LTR ERVK -6285 196 8 4 1392 3123 14 5 47 chr5 105853342 105853725 -46683534 - IAPLTR1_Mm LTR ERVK 0 367 1 4 1392 1662 132 58 7 chr5 105853725 105853999 -46683260 + ORR1B2 LTR MaLR 80 367 0 4 1392 362 270 200 0 chr5 105854011 105854126 -46683133 + B1F SINE Alu 1 138 -11 4 1392 626 58 19 19 chr5 105854534 105854640 -46682619 + (TG)n Simple_repeat Simple_repeat 1 106 0 4 1392 696 185 0 56 chr5 105854927 105855053 -46682206 - B1_Mur1 SINE Alu -25 124 6 4 1392 308 143 175 48 chr5 105855123 105855226 -46682033 + PB1D10 SINE Alu 2 117 0 4 1392 566 137 77 2 chr5 105855445 105855552 -46681707 - B1_Mur4 SINE Alu 0 120 9 4 1392 220 265 19 2 chr5 105855629 105855688 -46681571 + MIRc SINE MIR 35 93 -175 4 1392 228 408 31 39 chr5 105856327 105856457 -46680802 - L2b LINE L2 -9 3366 3238 4 1392 204 78 78 0 chr5 105856929 105856980 -46680279 + T-rich Low_complexity Low_complexity 1 55 0 4 1392 279 240 0 0 chr5 105857863 105857988 -46679271 + (TG)n Simple_repeat Simple_repeat 1 125 0 4 1392 297 231 20 0 chr5 105858020 105858167 -46679092 + (TG)n Simple_repeat Simple_repeat 1 150 0 4 1392 341 263 6 0 chr5 105858182 105858357 -46678902 + (TG)n Simple_repeat Simple_repeat 2 177 0 4 1392 1453 187 101 15 chr5 105859896 105860222 -46677037 - MTD LTR MaLR 0 419 66 4 1392 278 294 212 59 chr5 105860460 105860904 -46676355 - Charlie2b DNA MER1_type -61 2721 2210 4 1392 477 287 147 0 chr5 105860906 105861042 -46676217 + RSINE1 SINE B4 3 158 -7 4 1392 207 0 0 0 chr5 105861062 105861085 -46676174 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1392 321 26 0 0 chr5 105861739 105861777 -46675482 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1392 798 169 44 0 chr5 105861841 105861977 -46675282 + B1_Mus1 SINE Alu 6 147 -1 4 1392 21 0 0 0 chr5 105861985 105862006 -46675253 + AT_rich Low_complexity Low_complexity 1 21 0 4 1392 562 190 10 0 chr5 105862218 105862318 -46674941 - B1_Mus1 SINE Alu -41 107 7 4 1392 340 245 9 93 chr5 105862221 105862329 -46674930 - MT2B LTR ERVL -343 258 160 4 1392 477 256 205 66 chr5 105862617 105862905 -46674354 + MTEa LTR MaLR 1 328 -51 4 1392 254 303 11 53 chr5 105863192 105863286 -46673973 - L2a LINE L2 -4 3422 3333 4 1392 310 225 36 48 chr5 105863455 105863539 -46673720 - ID_B1 SINE B4 -34 190 108 4 1392 265 29 0 0 chr5 105863883 105863917 -46673342 + B1_Mus1 SINE Alu 23 56 -92 4 1392 225 235 131 57 chr5 105863917 105864005 -46673254 + B4A SINE B4 107 237 -55 4 1392 361 211 34 10 chr5 105863954 105864049 -46673210 - B1_Mur2 SINE Alu -18 131 1 4 1392 297 322 139 33 chr5 105864068 105864248 -46673011 + MLT1A0 LTR MaLR 1 199 -166 4 1392 473 58 14 0 chr5 105864351 105864420 -46672839 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 4 1392 679 92 18 0 chr5 105864926 105865035 -46672224 + (TCTCCC)n Simple_repeat Simple_repeat 4 114 0 4 1392 248 268 133 10 chr5 105865035 105865051 -46672208 - ID_B1 SINE B4 0 224 115 4 1392 369 146 183 0 chr5 105865051 105865133 -46672126 - B1_Mur1 SINE Alu -19 130 34 4 1392 1015 69 0 0 chr5 105865837 105865967 -46671292 + B1_Mus1 SINE Alu 19 148 0 4 1392 2443 115 25 54 chr5 105867124 105867530 -46669729 + ORR1B1 LTR MaLR 1 394 0 4 1392 526 273 45 15 chr5 105868127 105868261 -46668998 + ID_B1 SINE B4 82 219 -5 4 1392 254 260 329 7 chr5 105868264 105868419 -46668840 + ID_B1 SINE B4 2 206 -18 4 1392 688 263 98 21 chr5 105869511 105869705 -46667554 - B3 SINE B2 -5 211 3 4 1392 288 0 0 0 chr5 105870502 105870534 -46666725 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 4 1392 470 0 57 0 chr5 105870693 105870763 -46666496 + (TC)n Simple_repeat Simple_repeat 1 74 0 4 1392 324 0 0 0 chr5 105871236 105871272 -46665987 + (TTG)n Simple_repeat Simple_repeat 3 38 0 4 1392 318 274 0 0 chr5 105871640 105871742 -46665517 + (TA)n Simple_repeat Simple_repeat 2 103 0 4 1392 197 33 0 32 chr5 105871951 105871982 -46665277 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1392 1063 66 0 0 chr5 105871994 105872131 -46665128 - B1_Mus1 SINE Alu -2 146 10 4 1392 1389 82 22 0 chr5 105872802 105872986 -46664273 + B2_Mm2 SINE B2 1 188 -7 4 1392 768 222 99 0 chr5 105873065 105873236 -46664023 + B3 SINE B2 4 191 -25 4 1392 378 0 0 0 chr5 105874817 105874859 -46662400 + (CAGG)n Simple_repeat Simple_repeat 1 42 0 4 1392 222 208 0 0 chr5 105875400 105875453 -46661806 + CT-rich Low_complexity Low_complexity 1 53 0 4 1392 278 26 26 0 chr5 105875457 105875496 -46661763 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1392 434 289 10 0 chr5 105875530 105875634 -46661625 - PB1D10 SINE Alu -1 116 12 4 1392 1147 91 0 109 chr5 105875699 105875910 -46661349 - B2_Mm2 SINE B2 -6 189 2 4 1392 222 156 0 0 chr5 105875920 105875965 -46661294 + T-rich Low_complexity Low_complexity 1 45 0 4 1392 3697 39 0 0 chr5 105875967 105876400 -46660859 - L1Md_T LINE L1 0 6582 6150 4 1392 4977 19 0 0 chr5 105876400 105877191 -46660068 + L1Md_T LINE L1 5367 6157 -425 4 1392 8240 44 8 5 chr5 105877178 105878470 -46658789 - L1Md_F2 LINE L1 -3 6579 5285 4 1392 186 0 88 0 chr5 105878627 105878661 -46658598 + (CA)n Simple_repeat Simple_repeat 1 37 0 4 1392 2724 60 11 11 chr5 105879411 105879765 -46657494 - L1_Mus1 LINE L1 0 6567 6214 4 1392 520 229 85 0 chr5 105880071 105880189 -46657070 + ID_B1 SINE B4 89 216 -8 4 1392 217 259 74 0 chr5 105880288 105880342 -46656917 - ID4 SINE ID -14 69 12 4 1392 1202 97 28 6 chr5 105880395 105880571 -46656688 - B2_Mm2 SINE B2 -14 181 2 4 1392 223 178 0 0 chr5 105880962 105881007 -46656252 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1392 295 398 0 0 chr5 105881005 105881133 -46656126 + (CA)n Simple_repeat Simple_repeat 1 128 0 4 1392 608 231 8 0 chr5 105881146 105881263 -46655996 - RSINE1 SINE B4 -37 128 11 4 1392 29 0 0 0 chr5 105883651 105883680 -46653579 + AT_rich Low_complexity Low_complexity 1 29 0 4 1392 445 169 4 0 chr5 105883736 105883819 -46653440 + Lx2B LINE L1 6526 6611 -362 4 1392 204 40 0 0 chr5 105883871 105883896 -46653363 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1392 781 270 129 13 chr5 105883912 105884137 -46653122 - B4A SINE B4 -34 258 8 5 1392 243 188 0 0 chr5 105884734 105884782 -46652477 + (TA)n Simple_repeat Simple_repeat 2 49 0 5 1392 210 264 9 19 chr5 105886447 105886555 -46650704 + (CATA)n Simple_repeat Simple_repeat 1 107 0 5 1392 25 51 0 0 chr5 105888473 105888512 -46648747 + AT_rich Low_complexity Low_complexity 1 39 0 5 1392 1058 209 0 10 chr5 105888983 105889186 -46648073 + B3 SINE B2 2 202 -14 5 1392 355 171 49 0 chr5 105889529 105889611 -46647648 - L1MB4 LINE L1 -7 6173 6088 5 1392 644 273 153 24 chr5 105889636 105889891 -46647368 - B4A SINE B4 0 292 5 5 1392 184 332 86 82 chr5 105890318 105890561 -46646698 - MIRb SINE MIR -2 266 23 5 1392 1429 258 43 37 chr5 105891109 105891427 -46645832 + ORR1D2 LTR MaLR 3 322 -48 5 1392 510 86 0 14 chr5 105891427 105891498 -46645761 - ORR1A3 LTR MaLR 0 326 257 5 1392 8316 32 9 1 chr5 105891498 105893059 -46644200 - L1Md_F2 LINE L1 -2 6580 5009 5 1392 339 95 0 23 chr5 105893059 105893116 -46644143 - ORR1A3 LTR MaLR -48 298 226 5 1392 1797 135 0 50 chr5 105893115 105893418 -46643841 - ORR1A1 LTR MaLR -57 289 2 5 1392 854 249 27 27 chr5 105893767 105893990 -46643269 + ID_B1 SINE B4 2 224 0 5 1392 650 217 208 17 chr5 105894991 105895169 -46642090 - B3 SINE B2 -3 213 2 5 1392 464 202 11 11 chr5 105895559 105895649 -46641610 - B1_Mm SINE Alu -57 90 1 5 1392 382 232 0 24 chr5 105895840 105895924 -46641335 + ID4 SINE ID 2 83 0 5 1392 335 248 23 0 chr5 105897112 105897189 -46640070 + ID4 SINE ID 7 87 -65 5 1392 799 266 49 5 chr5 105898238 105898442 -46638817 - ID_B1 SINE B4 -11 213 1 5 1392 429 20 0 0 chr5 105898685 105898735 -46638524 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 5 1392 446 294 0 0 chr5 105899404 105899513 -46637746 + PB1D10 SINE Alu 9 117 0 5 1392 444 206 180 16 chr5 105899706 105899834 -46637425 + B1_Mur1 SINE Alu 1 149 0 5 1392 411 319 138 55 chr5 105900591 105900953 -46636306 + MLT1H-int LTR MaLR 1 392 -1017 5 1392 225 133 0 100 chr5 105901045 105901073 -46636186 + A-rich Low_complexity Low_complexity 1 24 0 5 1392 1221 68 0 0 chr5 105901073 105901220 -46636039 + B1_Mus2 SINE Alu 1 147 0 5 1392 225 133 0 100 chr5 105901220 105901241 -46636018 + A-rich Low_complexity Low_complexity 25 45 0 5 1392 414 301 28 49 chr5 105901383 105901471 -46635788 + MLT1H-int LTR MaLR 1265 1351 -58 5 1392 2118 152 86 0 chr5 105901471 105901833 -46635426 - ORR1B1 LTR MaLR -1 393 1 5 1392 414 301 28 49 chr5 105901833 105901887 -46635372 + MLT1H-int LTR MaLR 1352 1403 -6 5 1392 697 130 0 0 chr5 105904151 105904259 -46633000 - B1F2 SINE Alu 0 149 42 5 1392 518 258 104 47 chr5 105904259 105904361 -46632898 - ID_B1 SINE B4 0 222 1 5 1392 243 338 0 12 chr5 105904483 105904564 -46632695 + BC1_Mm scRNA scRNA 5 84 -68 5 1392 224 260 83 83 chr5 105905633 105905649 -46631610 + PB1D10 SINE Alu 17 100 -17 5 1392 402 206 0 0 chr5 105905649 105905717 -46631542 + ID_B1 SINE B4 140 207 -17 5 1392 347 244 244 0 chr5 105905816 105905935 -46631324 - RMER15 LTR ERVL -14 561 414 5 1393 189 0 0 0 chr5 105906384 105906405 -46630854 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1393 1102 95 0 0 chr5 105906914 105907062 -46630197 + B1_Mus1 SINE Alu 1 148 0 5 1393 1113 58 0 0 chr5 105907899 105908038 -46629221 - B1_Mus2 SINE Alu 0 147 9 5 1393 633 221 12 60 chr5 105908038 105908103 -46629156 - ID_B1 SINE B4 0 224 33 5 1393 207 328 32 16 chr5 105911359 105911421 -46625838 - MER5A DNA MER1_type -1 188 126 5 1393 222 37 0 0 chr5 105911443 105911470 -46625789 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1393 443 275 75 34 chr5 105911893 105912040 -46625219 + RSINE1 SINE B4 10 162 -3 5 1393 494 31 16 0 chr5 105912058 105912122 -46625137 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 5 1393 260 289 213 7 chr5 105913188 105913324 -46623935 + MER20 DNA MER1_type 46 209 -10 5 1393 24 0 0 0 chr5 105918291 105918315 -46618944 + AT_rich Low_complexity Low_complexity 1 24 0 5 1393 394 319 19 83 chr5 105919605 105919762 -46617497 + B4A SINE B4 24 170 -122 5 1393 213 108 0 0 chr5 105922478 105922515 -46614744 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1393 818 97 0 14 chr5 105923862 105924008 -46613251 + L1_Mus4 LINE L1 6493 6636 0 5 1393 444 150 0 0 chr5 105924019 105924099 -46613160 + (GA)n Simple_repeat Simple_repeat 2 81 0 5 1393 21 0 0 0 chr5 105924426 105924447 -46612812 + GC_rich Low_complexity Low_complexity 1 21 0 5 1393 1272 253 87 50 chr5 105925040 105925398 -46611861 + MTE2a LTR MaLR 2 372 -7 5 1393 478 297 24 103 chr5 105925760 105925925 -46611334 + RSINE1 SINE B4 12 163 -2 5 1393 230 217 31 62 chr5 105927230 105927294 -46609965 + MLT1A0 LTR MaLR 242 303 -62 5 1393 260 53 0 26 chr5 105927312 105927351 -46609908 + (CAA)n Simple_repeat Simple_repeat 1 38 0 5 1393 702 187 29 0 chr5 105927379 105927518 -46609741 - B1_Mur1 SINE Alu -6 143 1 5 1393 310 296 91 10 chr5 105928017 105928116 -46609143 - MTEb LTR MaLR -201 178 72 5 1393 931 135 21 2 chr5 105928235 105928382 -46608877 + ORR1B2-int LTR MaLR 1363 1530 -50 5 1393 614 148 0 17 chr5 105928382 105928499 -46608760 + ORR1B2 LTR MaLR 4 118 -249 5 1393 1912 154 3 25 chr5 105928517 105928843 -46608416 + ORR1B2 LTR MaLR 41 359 -8 5 1393 227 333 106 35 chr5 105928855 105929054 -46608205 + MIRb SINE MIR 38 250 -18 5 1393 306 367 58 71 chr5 105929708 105929934 -46607325 - MER21B LTR ERV1 -147 716 494 5 1393 207 100 0 0 chr5 105930792 105930822 -46606437 + (CTG)n Simple_repeat Simple_repeat 3 32 0 5 1393 201 183 49 16 chr5 105930822 105930883 -46606376 + C-rich Low_complexity Low_complexity 3 65 0 5 1393 729 54 0 0 chr5 105930884 105930976 -46606283 - B1_Mus1 SINE Alu -56 92 1 5 1393 254 354 96 46 chr5 105931688 105931907 -46605352 - MER21B LTR ERV1 -553 310 81 5 1393 794 206 29 35 chr5 105932267 105932419 -46604840 + ORR1E LTR MaLR 1 144 -215 5 1393 827 280 234 50 chr5 105932419 105933129 -46604130 - RMER13A LTR ERVK 0 860 21 5 1393 290 297 97 26 chr5 105933320 105933434 -46603825 + ORR1E LTR MaLR 257 378 -1 5 1393 284 267 9 114 chr5 105934600 105934714 -46602545 - MTEb LTR MaLR -274 105 4 5 1393 626 235 72 36 chr5 105934719 105934940 -46602319 - MTEb-int LTR MaLR -2 1578 1350 5 1393 640 244 43 18 chr5 105934946 105935109 -46602150 + B3 SINE B2 2 168 -48 5 1393 1286 158 62 41 chr5 105935104 105935348 -46601911 + MTC LTR MaLR 171 419 -2 5 1393 6216 156 109 12 chr5 105935350 105936495 -46600764 + MTC-int LTR MaLR 3 1258 0 5 1393 2482 142 9 50 chr5 105936501 105936593 -46600666 + MTC LTR MaLR 8 95 -326 5 1393 1186 62 7 0 chr5 105936593 105936738 -46600521 + B1_Mm SINE Alu 2 147 0 5 1393 2482 142 9 50 chr5 105936738 105937068 -46600191 + MTC LTR MaLR 96 413 -8 5 1393 642 245 58 92 chr5 105937223 105937430 -46599829 + ID_B1 SINE B4 10 209 -15 5 1393 908 269 144 40 chr5 105937447 105937795 -46599464 - MTC LTR MaLR -20 401 18 5 1393 224 286 31 52 chr5 105938026 105938122 -46599137 + MIR SINE MIR 61 154 -108 5 1393 1384 75 43 5 chr5 105938585 105938772 -46598487 - B2_Mm2 SINE B2 0 195 2 5 1393 259 324 26 36 chr5 105938832 105938931 -46598328 - ID4_ SINE ID -46 106 11 5 1393 976 196 39 39 chr5 105938978 105939185 -46598074 - B3 SINE B2 -1 215 9 5 1393 343 303 45 19 chr5 105939201 105939331 -46597928 - B1F SINE Alu -7 142 10 5 1393 2210 118 6 18 chr5 105939525 105939863 -46597396 + ORR1A1 LTR MaLR 5 338 -8 5 1393 416 341 37 60 chr5 105939912 105940093 -46597166 - LTR40b LTR ERVL -10 452 269 5 1393 1330 179 0 4 chr5 105940093 105940318 -46596941 + URR1B DNA MER1_type 2 225 0 5 1393 416 341 37 60 chr5 105940318 105940391 -46596868 - LTR40b LTR ERVL -194 268 204 5 1393 797 246 71 15 chr5 105940391 105940589 -46596670 + B3 SINE B2 1 209 -7 5 1393 252 0 0 0 chr5 105940594 105940622 -46596637 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1393 1849 126 90 26 chr5 105940733 105941076 -46596183 - ORR1B2 LTR MaLR 0 367 3 5 1393 232 333 11 0 chr5 105941842 105941929 -46595330 + GA-rich Low_complexity Low_complexity 2 89 0 5 1393 747 274 67 110 chr5 105941940 105942285 -46594974 - MER21B LTR ERV1 -105 758 429 5 1393 714 208 42 64 chr5 105942925 105943143 -46594116 + ORR1D2 LTR MaLR 164 371 -8 5 1393 460 292 13 77 chr5 105943228 105943384 -46593875 + RSINE1 SINE B4 13 158 -7 5 1393 252 0 0 0 chr5 105943387 105943415 -46593844 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1393 256 379 52 17 chr5 105943512 105943684 -46593575 + MIR SINE MIR 30 207 -55 5 1393 842 162 9 20 chr5 105943850 105944319 -46592940 + (TG)n Simple_repeat Simple_repeat 1 463 0 5 1393 268 261 193 14 chr5 105944328 105944468 -46592791 - RSINE1 SINE B4 0 165 1 5 1393 409 0 54 0 chr5 105946691 105946747 -46590512 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5 1393 495 0 0 0 chr5 105947366 105947421 -46589838 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1393 351 0 0 0 chr5 105947639 105947678 -46589581 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1393 21 36 0 0 chr5 105948195 105948223 -46589036 + GC_rich Low_complexity Low_complexity 1 28 0 5 1393 29 98 0 0 chr5 105948299 105948391 -46588868 + GC_rich Low_complexity Low_complexity 1 92 0 5 1393 468 0 0 0 chr5 105949273 105949325 -46587934 + (TC)n Simple_repeat Simple_repeat 2 53 0 5 1393 253 229 135 0 chr5 105950327 105950423 -46586836 - PB1D10 SINE Alu 0 117 9 5 1393 565 161 290 0 chr5 105950345 105950500 -46586759 - ID_B1 SINE B4 -19 205 6 5 1393 354 45 0 0 chr5 105950671 105950715 -46586544 + (ATTG)n Simple_repeat Simple_repeat 4 47 0 5 1393 675 133 0 9 chr5 105950724 105950830 -46586429 - B1_Mus1 SINE Alu -36 112 8 5 1393 276 292 53 70 chr5 105950732 105950846 -46586413 - B4A SINE B4 -98 194 83 5 1393 396 291 8 17 chr5 105951126 105951245 -46586014 - PB1D7 SINE Alu -2 118 1 5 1393 185 385 8 57 chr5 105951327 105951451 -46585808 - MIRb SINE MIR -132 136 19 6 1393 528 272 0 26 chr5 105951695 105951846 -46585413 + B1F2 SINE Alu 1 147 -2 6 1393 1146 148 0 21 chr5 105951884 105952040 -46585219 + B2_Mm2 SINE B2 2 156 -39 6 1393 234 0 0 0 chr5 105952040 105952066 -46585193 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 6 1393 1146 148 0 21 chr5 105952066 105952096 -46585163 + B2_Mm2 SINE B2 157 184 -11 6 1393 22 0 0 0 chr5 105952434 105952456 -46584803 + AT_rich Low_complexity Low_complexity 1 22 0 6 1393 788 198 0 11 chr5 105953099 105953392 -46583867 + (TG)n Simple_repeat Simple_repeat 1 289 0 6 1393 404 312 66 40 chr5 105953446 105953673 -46583586 - B4A SINE B4 -4 288 56 6 1393 333 179 0 0 chr5 105955269 105955325 -46581934 + PB1D9 SINE Alu 16 71 -49 6 1393 538 246 23 23 chr5 105955328 105955461 -46581798 - B4 SINE B4 -74 218 86 6 1393 206 121 0 0 chr5 105955461 105955494 -46581765 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1393 437 107 400 19 chr5 105956277 105956382 -46580877 - B1_Mur3 SINE Alu 0 149 5 6 1393 206 192 0 19 chr5 105956763 105956816 -46580443 + C-rich Low_complexity Low_complexity 3 54 0 6 1393 559 258 17 0 chr5 105957815 105957935 -46579324 - B1_Mur1 SINE Alu -9 140 19 6 1393 225 94 0 0 chr5 105958198 105958230 -46579029 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1393 479 216 43 8 chr5 105958664 105958781 -46578478 - B1_Mur3 SINE Alu -21 128 8 6 1393 978 262 20 53 chr5 105958825 105959127 -46578132 + B4A SINE B4 1 292 0 6 1393 255 280 145 54 chr5 105960481 105960757 -46576502 + L1MEf LINE L1 629 929 -5271 6 1393 776 153 6 0 chr5 105960769 105960939 -46576320 + (CA)n Simple_repeat Simple_repeat 2 172 0 6 1393 899 154 0 4 chr5 105960965 105961215 -46576044 + (CA)n Simple_repeat Simple_repeat 1 249 0 6 1393 979 122 0 39 chr5 105961400 105961554 -46575705 - B1_Mur4 SINE Alu -1 149 2 6 1393 714 272 58 0 chr5 105962442 105962633 -46574626 - B3 SINE B2 -14 202 1 6 1393 234 0 0 0 chr5 105962645 105962671 -46574588 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 6 1393 512 244 126 18 chr5 105962749 105962916 -46574343 + B3A SINE B2 1 185 -13 6 1393 269 149 15 0 chr5 105962916 105962983 -46574276 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1393 310 253 25 0 chr5 105963302 105963381 -46573878 + ID4_ SINE ID 2 82 -1 6 1393 270 306 120 8 chr5 105963960 105964085 -46573174 - Lx8 LINE L1 -380 7093 6955 6 1393 2060 101 34 16 chr5 105964175 105964498 -46572761 - ORR1A4 LTR MaLR 0 329 1 6 1393 3177 139 27 27 chr5 105964499 105965302 -46571957 - ORR1A4-int LTR MaLR -191 1772 1001 6 1393 715 156 166 12 chr5 105965304 105965473 -46571786 - ORR1A4 LTR MaLR -159 235 41 6 1393 757 235 196 16 chr5 105965528 105965783 -46571476 - Lx8 LINE L1 -720 6753 6453 6 1393 287 285 98 57 chr5 105966764 105966915 -46570344 - LTR37B LTR ERV1 -2 466 313 6 1393 627 214 100 11 chr5 105966915 105967095 -46570164 + B3A SINE B2 3 198 0 6 1393 287 285 98 57 chr5 105967095 105967207 -46570052 - LTR37B LTR ERV1 -156 312 192 6 1393 234 0 0 0 chr5 105968032 105968058 -46569201 + (CATA)n Simple_repeat Simple_repeat 2 27 0 6 1393 206 209 0 0 chr5 105968058 105968101 -46569158 + (CCCA)n Simple_repeat Simple_repeat 2 44 0 6 1393 1158 112 0 0 chr5 105968101 105968279 -46568980 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 6 1393 198 0 0 0 chr5 105968281 105968303 -46568956 + (TCCA)n Simple_repeat Simple_repeat 3 24 0 6 1393 28 0 0 0 chr5 105968593 105968621 -46568638 + AT_rich Low_complexity Low_complexity 1 28 0 6 1393 1517 225 63 5 chr5 105968696 105969076 -46568183 - MTD LTR MaLR -14 405 4 6 1393 576 292 7 0 chr5 105969076 105969213 -46568046 - ID_B1 SINE B4 -85 139 2 6 1393 428 204 26 17 chr5 105969288 105969403 -46567856 - MLT1A1 LTR MaLR -2 406 291 6 1393 2375 89 6 50 chr5 105969428 105969770 -46567489 - ORR1A2 LTR MaLR 0 327 1 6 1393 575 273 15 0 chr5 105970175 105970307 -46566952 + RSINE1 SINE B4 12 145 -20 6 1393 4173 114 51 5 chr5 105970654 105971279 -46565980 + Lx LINE L1 5981 6634 -20 6 1393 346 284 72 23 chr5 105971282 105971476 -46565783 - MLT1A1 LTR MaLR -233 279 33 6 1393 954 268 141 64 chr5 105971865 105971980 -46565279 - Lx8 LINE L1 -249 7224 7107 6 1393 258 32 0 0 chr5 105971980 105972011 -46565248 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1393 954 268 141 64 chr5 105972011 105972349 -46564910 - Lx8 LINE L1 -367 7106 6736 6 1393 237 43 64 0 chr5 105972531 105972578 -46564681 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 6 1393 832 35 26 0 chr5 105972578 105972692 -46564567 - B1_Mus1 SINE Alu 0 148 32 6 1393 519 112 23 12 chr5 105972687 105972808 -46564451 - B1_Mus2 SINE Alu -43 106 1 6 1393 308 219 8 130 chr5 105972808 105972846 -46564413 - MT2B LTR ERVL -447 154 133 6 1393 2569 149 5 7 chr5 105973833 105974272 -46562987 - RLTR17 LTR ERVK -152 540 103 6 1393 280 140 17 17 chr5 105974284 105974342 -46562917 - RLTR17 LTR ERVK -634 58 1 6 1393 706 234 6 19 chr5 105974342 105974498 -46562761 - ID_B1 SINE B4 -62 162 9 6 1393 181 290 71 45 chr5 105976175 105976287 -46560972 - L2c LINE L2 -5 3382 3268 6 1393 727 196 22 7 chr5 105976541 105976680 -46560579 + B1_Mur1 SINE Alu 2 142 -7 6 1393 273 265 29 0 chr5 105976697 105976765 -46560494 + ID4_ SINE ID 2 71 -12 6 1393 321 185 6 237 chr5 105977397 105977553 -46559706 - PB1D9 SINE Alu 0 120 1 6 1393 375 275 174 16 chr5 105977553 105977895 -46559364 - L1_Rod LINE L1 -707 5482 5051 6 1393 209 286 48 48 chr5 105978247 105978350 -46558909 - L2a LINE L2 -80 3346 3244 6 1393 291 362 144 10 chr5 105978468 105978871 -46558388 - L2a LINE L2 -302 3124 2657 6 1393 214 348 0 0 chr5 105978872 105978941 -46558318 + ID4_ SINE ID 1 69 -14 6 1393 555 16 0 0 chr5 105978984 105979048 -46558211 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 6 1393 744 218 108 5 chr5 105979525 105979719 -46557540 - B3 SINE B2 -1 215 2 6 1393 227 317 99 0 chr5 105979783 105979925 -46557334 - L2a LINE L2 0 3426 3271 6 1393 216 0 0 0 chr5 105980028 105980052 -46557207 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1393 417 20 0 0 chr5 105980052 105980101 -46557158 + (GA)n Simple_repeat Simple_repeat 1 50 0 6 1393 210 71 0 0 chr5 105980346 105980374 -46556885 + (GA)n Simple_repeat Simple_repeat 1 28 0 6 1393 783 256 159 4 chr5 105980703 105980954 -46556305 - B4A SINE B4 -2 290 1 6 1393 4221 82 35 2 chr5 105981563 105982128 -46555131 - MT2B2 LTR ERVL 0 584 1 6 1393 283 352 33 0 chr5 105983114 105983236 -46554023 + MIRb SINE MIR 21 146 -122 6 1393 189 0 0 0 chr5 105983577 105983598 -46553661 + (CACAG)n Simple_repeat Simple_repeat 5 25 0 6 1393 212 252 61 7 chr5 105984296 105984444 -46552815 + (TGAG)n Simple_repeat Simple_repeat 2 157 0 6 1393 202 152 21 21 chr5 105984516 105984563 -46552696 + GA-rich Low_complexity Low_complexity 1 47 0 6 1393 480 229 42 0 chr5 105984918 105985036 -46552223 - Lx8 LINE L1 -194 7279 7157 6 1393 914 317 23 26 chr5 105985054 105985287 -46551972 + L1MB1 LINE L1 5785 6018 -150 6 1393 1690 180 74 23 chr5 105985287 105985639 -46551620 - ORR1D1 LTR MaLR 0 374 5 6 1393 914 317 23 26 chr5 105985639 105985790 -46551469 + L1MB1 LINE L1 6019 6168 0 6 1393 185 342 123 0 chr5 105985938 105986052 -46551207 - MIR SINE MIR -106 156 29 6 1393 300 154 0 0 chr5 105986165 105986217 -46551042 + (TAA)n Simple_repeat Simple_repeat 1 52 0 6 1393 23 0 0 0 chr5 105986269 105986292 -46550967 + GC_rich Low_complexity Low_complexity 1 23 0 6 1393 590 232 256 0 chr5 105986355 105986634 -46550625 - ORR1D2 LTR MaLR -4 366 17 6 1393 699 274 53 10 chr5 105987394 105987600 -46549659 + ID_B1 SINE B4 8 222 -2 6 1393 298 328 36 44 chr5 105987855 105987992 -46549267 - ID_B1 SINE B4 -2 222 87 6 1393 418 335 53 8 chr5 105988238 105988500 -46548759 + L1MA5 LINE L1 5840 6113 -187 6 1393 367 244 0 0 chr5 105988566 105988644 -46548615 + ID4 SINE ID 4 81 -2 6 1393 243 0 0 0 chr5 105989129 105989156 -46548103 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1393 276 30 0 0 chr5 105989252 105989285 -46547974 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1393 1131 76 0 14 chr5 105989287 105989434 -46547825 - B1_Mus1 SINE Alu -2 146 2 6 1393 878 28 9 0 chr5 105990375 105990484 -46546775 + (TTGG)n Simple_repeat Simple_repeat 4 113 0 6 1393 438 20 0 0 chr5 105990487 105990538 -46546721 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 6 1393 527 205 86 7 chr5 105990538 105990666 -46546593 - B1_Mur2 SINE Alu -12 137 3 6 1393 272 207 22 109 chr5 105990586 105990678 -46546581 - MT2B LTR ERVL -363 238 155 6 1393 267 267 99 41 chr5 105990690 105990811 -46546448 - B1F SINE Alu -2 147 20 6 1393 353 209 45 142 chr5 105991137 105991271 -46545988 + B1F SINE Alu 2 122 -5 6 1393 443 18 18 0 chr5 105991331 105991387 -46545872 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1393 947 221 75 30 chr5 105991530 105991796 -46545463 - ORR1C2 LTR MaLR -4 380 103 6 1393 589 60 8 107 chr5 105991798 105991883 -46545376 + L1_Mus4 LINE L1 6511 6594 -42 6 1393 3158 70 0 7 chr5 105991883 105992289 -46544970 + L1_Mus2 LINE L1 6163 6565 -1 6 1393 589 60 8 107 chr5 105992289 105992334 -46544925 + L1_Mus4 LINE L1 6595 6628 -8 6 1393 528 178 20 0 chr5 105992334 105992435 -46544824 - ORR1C2 LTR MaLR -270 104 2 6 1393 608 156 11 33 chr5 105992582 105992717 -46544542 + ORR1D1 LTR MaLR 1 130 -264 6 1393 1428 131 60 2 chr5 105992720 105992981 -46544278 - L1_Mus4 LINE L1 0 6654 6356 6 1393 1497 280 56 8 chr5 105992989 105993471 -46543788 - Lx8 LINE L1 -153 7320 6816 6 1393 213 219 0 0 chr5 105993828 105993869 -46543390 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 6 1393 869 169 186 0 chr5 105994160 105994337 -46542922 + B3 SINE B2 1 210 -6 6 1393 214 182 23 0 chr5 105994899 105994943 -46542316 + (GCCTG)n Simple_repeat Simple_repeat 1 45 0 6 1393 660 259 65 10 chr5 105995273 105995472 -46541787 + ID_B1 SINE B4 9 218 -6 6 1393 687 128 0 0 chr5 105997048 105997157 -46540102 + (GGA)n Simple_repeat Simple_repeat 3 111 0 6 1393 181 261 46 0 chr5 105997632 105997697 -46539562 + MIR3 SINE MIR 97 164 -44 6 1393 279 320 40 20 chr5 105998265 105998364 -46538895 - B4A SINE B4 -2 290 190 6 1393 296 317 48 0 chr5 105998545 105998649 -46538610 + Lx8 LINE L1 6555 6663 -810 7 1393 203 275 50 0 chr5 105998707 105998787 -46538472 - L2 LINE L2 -809 2610 2527 7 1393 1359 75 32 5 chr5 105999107 105999295 -46537964 + B2_Mm2 SINE B2 2 194 -1 7 1393 2116 248 66 18 chr5 105999453 106000000 -46537259 - Lx8 LINE L1 -628 6845 6273 7 1393 275 262 11 97 chr5 106000056 106000149 -46537110 + B3A SINE B2 97 181 -17 1 1393 410 122 53 26 chr5 106000369 106000445 -46536814 + Lx8 LINE L1 6878 6955 -518 2 1393 456 256 0 0 chr5 106000452 106000693 -46536566 + (CA)n Simple_repeat Simple_repeat 1 241 0 3 1393 1151 266 46 23 chr5 106000708 106001054 -46536205 + Lx8 LINE L1 6977 7330 -143 2 1393 429 20 0 0 chr5 106001589 106001639 -46535620 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1393 494 307 121 30 chr5 106001667 106001713 -46535546 - B4 SINE B4 -3 289 244 5 1393 1364 99 0 10 chr5 106001713 106001906 -46535353 - B2_Mm2 SINE B2 -4 191 1 6 1393 494 307 121 30 chr5 106001906 106002124 -46535135 - B4 SINE B4 -49 243 1 5 1393 253 287 195 43 chr5 106002529 106002693 -46534566 + Charlie1a DNA MER1_type 18 206 -1249 7 1393 255 211 19 37 chr5 106002899 106002953 -46534306 - RMER15-int LTR ERVL -55 4944 4892 8 1393 287 309 160 55 chr5 106003106 106003325 -46533934 - RMER15-int LTR ERVL -229 4770 4529 8 1393 1300 96 11 0 chr5 106003325 106003503 -46533756 + B2_Mm1t SINE B2 3 182 -11 9 1393 389 94 14 18 chr5 106003531 106003597 -46533662 + B2_Mm2 SINE B2 46 116 -82 1 1393 216 0 0 0 chr5 106003613 106003637 -46533622 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1 1393 776 107 8 0 chr5 106003642 106003763 -46533496 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 1 1393 803 260 78 41 chr5 106003915 106004208 -46533051 - RMER15-int LTR ERVL -549 4450 4147 8 1393 1302 305 45 47 chr5 106004240 106004451 -46532808 - RMER15-int LTR ERVL -2462 2537 2325 8 1393 778 197 81 25 chr5 106004451 106004649 -46532610 - B3 SINE B2 -7 209 1 1 1393 1302 305 45 47 chr5 106004649 106004884 -46532375 - RMER15-int LTR ERVL -2675 2324 2092 8 1393 548 282 147 31 chr5 106005309 106005595 -46531664 + Charlie1a DNA MER1_type 992 1310 -145 7 1393 1412 259 61 15 chr5 106006023 106006416 -46530843 + MTD LTR MaLR 5 415 -4 1 1393 243 0 0 0 chr5 106006417 106006444 -46530815 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 1 1393 551 227 129 0 chr5 106006647 106006779 -46530480 + B1_Mur2 SINE Alu 1 149 0 1 1393 210 91 0 0 chr5 106006782 106006815 -46530444 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1393 262 300 130 0 chr5 106007032 106007132 -46530127 + B3A SINE B2 5 117 -81 1 1393 469 251 114 75 chr5 106007139 106007393 -46529866 - Lx8 LINE L1 -299 7174 6911 1 1393 241 368 60 77 chr5 106007414 106007767 -46529492 - ORR1E LTR MaLR -5 354 8 2 1393 528 16 0 0 chr5 106007899 106007960 -46529299 + (TC)n Simple_repeat Simple_repeat 2 62 0 2 1393 288 0 0 0 chr5 106007962 106007994 -46529265 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1393 279 79 0 0 chr5 106008394 106008432 -46528827 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1393 273 250 29 0 chr5 106008690 106008758 -46528501 + ID4_ SINE ID 2 71 -12 2 1393 663 147 171 74 chr5 106009718 106009894 -46527365 + B2_Mm2 SINE B2 2 194 -1 2 1393 229 349 112 9 chr5 106010166 106010273 -46526986 - MIR SINE MIR -142 120 3 2 1393 436 239 24 71 chr5 106010320 106010446 -46526813 + ID_B1 SINE B4 105 224 0 2 1393 406 254 90 21 chr5 106010645 106010790 -46526469 + RSINE1 SINE B4 4 158 -7 2 1393 675 270 409 5 chr5 106011077 106011290 -46525969 - Tigger7 DNA MER2_type -2188 303 5 2 1393 372 300 33 16 chr5 106011516 106011638 -46525621 - LTR87 LTR ERVL? -70 554 431 3 1393 224 330 72 18 chr5 106011973 106012084 -46525175 - L2 LINE L2 -481 2938 2822 3 1393 537 16 0 0 chr5 106012088 106012150 -46525109 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 3 1393 847 207 0 0 chr5 106012154 106012294 -46524965 - B1_Mur2 SINE Alu -4 145 6 3 1393 336 209 275 0 chr5 106012350 106012441 -46524818 + B1F2 SINE Alu 27 142 -7 3 1393 445 121 24 0 chr5 106012485 106012568 -46524691 + (GA)n Simple_repeat Simple_repeat 2 86 0 3 1393 193 338 203 13 chr5 106012662 106012815 -46524444 - L2 LINE L2 -697 2722 2541 3 1393 799 275 14 0 chr5 106013346 106013564 -46523695 + ID_B1 SINE B4 4 224 0 3 1393 832 135 251 48 chr5 106014567 106014754 -46522505 - URR1A DNA MER1_type -1 225 1 3 1393 394 238 144 24 chr5 106016499 106016624 -46520635 + B1F SINE Alu 9 148 -1 3 1393 387 286 0 0 chr5 106017251 106017349 -46519910 + B1F1 SINE Alu 1 98 -51 3 1393 526 263 39 33 chr5 106017926 106018094 -46519165 + ID_B1 SINE B4 50 217 -75 4 1393 2850 117 22 2 chr5 106018393 106018837 -46518422 + RLTR11B LTR ERVK 1 453 0 4 1393 297 327 9 35 chr5 106019702 106019816 -46517443 - MLT1A1 LTR MaLR -294 114 4 4 1393 401 294 114 85 chr5 106020082 106020353 -46516906 + B4 SINE B4 3 281 -11 4 1393 498 241 35 0 chr5 106020414 106020763 -46516496 + (CA)n Simple_repeat Simple_repeat 1 361 0 4 1393 508 173 29 23 chr5 106020773 106020945 -46516314 + (CATA)n Simple_repeat Simple_repeat 1 173 0 4 1393 627 197 11 6 chr5 106020916 106021095 -46516164 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1393 237 262 16 0 chr5 106021097 106021158 -46516101 + (CATA)n Simple_repeat Simple_repeat 1 62 0 4 1393 442 224 427 16 chr5 106021733 106021981 -46515278 - Lx8 LINE L1 -1 7472 7123 4 1393 312 255 30 10 chr5 106022035 106022134 -46515125 + Lx9 LINE L1 5872 5972 -1672 4 1393 886 203 26 15 chr5 106022325 106022520 -46514739 - B3A SINE B2 0 198 2 5 1393 262 265 67 58 chr5 106022707 106022811 -46514448 + Charlie8 DNA MER1_type 716 820 -1608 5 1393 200 114 0 28 chr5 106023343 106023379 -46513880 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 5 1393 186 103 0 0 chr5 106023379 106023408 -46513851 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 5 1393 1037 231 35 35 chr5 106024000 106024283 -46512976 - B4A SINE B4 -8 284 2 5 1393 633 101 0 0 chr5 106025266 106025365 -46511894 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 5 1393 856 276 136 44 chr5 106027135 106027283 -46509976 + L1MC1 LINE L1 5785 5929 -404 5 1393 2333 98 19 6 chr5 106027283 106027602 -46509657 - ORR1A2 LTR MaLR 0 327 5 5 1393 856 276 136 44 chr5 106027602 106027953 -46509306 + L1MC1 LINE L1 5930 6329 -4 5 1393 2626 103 116 22 chr5 106028681 106029128 -46508131 - Lx LINE L1 -1 6653 6165 5 1393 565 275 174 0 chr5 106029659 106029826 -46507433 + ID_B1 SINE B4 25 220 -4 5 1393 644 241 112 5 chr5 106029869 106030065 -46507194 + Lx8 LINE L1 6880 7096 -377 6 1393 330 131 262 0 chr5 106030139 106030200 -46507059 + B2_Mm1t SINE B2 84 160 -33 6 1393 234 0 0 0 chr5 106030200 106030226 -46507033 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 6 1393 564 29 0 0 chr5 106030387 106030457 -46506802 + (TC)n Simple_repeat Simple_repeat 2 71 0 6 1393 593 276 120 18 chr5 106030520 106030745 -46506514 + Lx8 LINE L1 7222 7469 -4 6 1393 935 187 148 9 chr5 106030768 106030984 -46506275 + Lx3C LINE L1 6727 6972 -4 6 1393 586 199 13 59 chr5 106031037 106031169 -46506090 + B1_Mus1 SINE Alu 5 144 -6 6 1393 333 103 29 14 chr5 106031169 106031178 -46506081 + (GA)n Simple_repeat Simple_repeat 1 9 0 6 1393 1105 75 7 7 chr5 106031178 106031326 -46505933 + B1_Mus1 SINE Alu 1 148 0 6 1393 333 103 29 14 chr5 106031326 106031385 -46505874 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1393 256 326 11 23 chr5 106032090 106032107 -46505152 + MT2B2 LTR ERVL 152 167 -417 6 1393 313 260 131 4 chr5 106032107 106032209 -46505050 + PB1D7 SINE Alu 1 112 -8 7 1393 789 223 95 11 chr5 106032481 106032671 -46504588 + B3 SINE B2 3 208 -8 7 1393 21 0 0 0 chr5 106032674 106032695 -46504564 + AT_rich Low_complexity Low_complexity 1 21 0 7 1393 195 129 0 0 chr5 106033010 106033041 -46504218 + (GGGAGA)n Simple_repeat Simple_repeat 6 36 0 7 1393 29 28 0 0 chr5 106033350 106033386 -46503873 + AT_rich Low_complexity Low_complexity 1 36 0 7 1393 626 241 40 29 chr5 106033401 106033576 -46503683 + B3A SINE B2 4 180 -18 7 1393 304 222 110 12 chr5 106033595 106033677 -46503582 + HAL1-3A_ME LINE L1 1977 2066 -792 7 1393 568 301 0 0 chr5 106033859 106034005 -46503254 + ID_B1 SINE B4 78 223 -1 7 1393 368 198 71 20 chr5 106034489 106034587 -46502672 - RSINE1 SINE B4 -61 104 2 7 1394 38 51 0 0 chr5 106037936 106037995 -46499264 + AT_rich Low_complexity Low_complexity 1 59 0 7 1394 184 91 45 0 chr5 106039293 106039337 -46497922 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 8 1394 22 35 0 0 chr5 106039578 106039607 -46497652 + AT_rich Low_complexity Low_complexity 1 29 0 8 1394 540 0 0 0 chr5 106040294 106040354 -46496905 + (TC)n Simple_repeat Simple_repeat 2 61 0 8 1394 581 227 8 8 chr5 106040540 106040660 -46496599 + RSINE1 SINE B4 2 121 -44 8 1394 338 308 38 15 chr5 106041612 106041752 -46495507 - PB1D10 SINE Alu -5 144 2 8 1394 348 215 35 55 chr5 106042553 106042675 -46494584 + PB1D10 SINE Alu 1 118 -2 8 1394 1228 302 16 25 chr5 106043101 106043464 -46493795 + MTEa LTR MaLR 20 379 0 8 1394 345 78 0 0 chr5 106043546 106043571 -46493688 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1394 1159 68 0 0 chr5 106043571 106043718 -46493541 + B1_Mus2 SINE Alu 1 147 0 8 1394 345 78 0 0 chr5 106043718 106043743 -46493516 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1394 421 259 27 27 chr5 106044385 106044496 -46492763 + PB1D7 SINE Alu 2 112 -8 9 1394 1616 251 112 18 chr5 106045058 106045550 -46491709 + Lx6 LINE L1 6911 7448 -12 9 1394 618 14 0 0 chr5 106045550 106045621 -46491638 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 9 1394 318 296 96 29 chr5 106045834 106045970 -46491289 - MLT1C LTR MaLR -178 289 145 9 1394 507 218 202 0 chr5 106046013 106046137 -46491122 + B1_Mur1 SINE Alu 1 149 0 9 1394 1235 41 7 0 chr5 106046141 106046287 -46490972 + B1_Mus1 SINE Alu 2 148 0 9 1394 741 285 27 47 chr5 106046347 106046634 -46490625 - MTE2a LTR MaLR -119 260 10 9 1394 418 261 0 118 chr5 106046906 106047041 -46490218 + B3A SINE B2 78 196 -2 9 1394 892 181 209 0 chr5 106047041 106047218 -46490041 + B3 SINE B2 1 214 -2 9 1394 377 273 21 90 chr5 106047218 106047238 -46490021 + B3 SINE B2 200 216 0 9 1394 610 347 88 58 chr5 106047355 106047835 -46489424 - MLT1G LTR MaLR -9 546 48 9 1394 688 267 122 114 chr5 106047904 106048045 -46489214 - MTE2a LTR MaLR 0 379 206 1 1394 486 0 0 0 chr5 106048045 106048099 -46489160 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1394 688 267 122 114 chr5 106048099 106048333 -46488926 - MTE2a LTR MaLR -174 205 1 1 1394 603 273 25 51 chr5 106048783 106048815 -46488444 - B3A SINE B2 0 198 169 1 1394 342 67 0 0 chr5 106048815 106048860 -46488399 + (TATG)n Simple_repeat Simple_repeat 2 46 0 1 1394 603 273 25 51 chr5 106048860 106049024 -46488235 - B3A SINE B2 -30 168 7 1 1394 874 135 62 21 chr5 106049043 106049187 -46488072 - B1_Mur4 SINE Alu 0 150 1 1 1394 283 359 132 34 chr5 106049899 106050254 -46487005 - LTR85b LTR Gypsy? -10 774 385 1 1394 219 69 0 0 chr5 106050399 106050428 -46486831 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1 1394 224 211 0 0 chr5 106050429 106050467 -46486792 - PB1 SINE Alu -19 108 71 1 1394 1977 163 0 168 chr5 106050468 106050926 -46486333 - RLTR14 LTR ERV1 0 382 2 1 1394 2577 149 2 51 chr5 106051636 106052068 -46485191 + MTC LTR MaLR 3 413 -8 1 1394 218 360 105 0 chr5 106052525 106052639 -46484620 + MIRb SINE MIR 59 184 -84 1 1394 699 281 127 12 chr5 106052712 106052957 -46484302 + B4 SINE B4 2 274 -18 1 1394 221 57 29 0 chr5 106052966 106053001 -46484258 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1394 188 67 0 32 chr5 106053549 106053580 -46483679 + (AGCTG)n Simple_repeat Simple_repeat 1 30 0 1 1394 821 197 112 27 chr5 106053584 106053772 -46483487 + ID_B1 SINE B4 21 224 0 1 1394 624 282 67 53 chr5 106053786 106054070 -46483189 + B4A SINE B4 1 288 -4 1 1394 534 273 17 41 chr5 106054507 106054679 -46482580 + B4A SINE B4 1 168 -124 1 1394 210 143 0 0 chr5 106054835 106054870 -46482389 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1394 242 386 26 17 chr5 106055138 106055254 -46482005 + LTR16D LTR ERVL 154 270 -381 1 1394 387 0 0 0 chr5 106055959 106056002 -46481257 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1394 229 340 102 10 chr5 106056032 106056130 -46481129 + PB1D9 SINE Alu 14 120 0 1 1394 201 337 83 10 chr5 106056480 106056576 -46480683 - L2c LINE L2 -229 3158 3056 1 1394 535 297 149 0 chr5 106056758 106056933 -46480326 - ID_B1 SINE B4 -4 220 20 1 1394 1068 211 34 0 chr5 106056980 106057189 -46480070 + B3 SINE B2 1 216 0 1 1394 997 238 32 18 chr5 106058186 106058404 -46478855 - MTEb LTR MaLR -48 331 111 1 1394 1168 96 30 65 chr5 106058567 106058767 -46478492 + B2_Mm2 SINE B2 1 193 -2 1 1394 1025 100 0 144 chr5 106058771 106058958 -46478301 + B2_Mm1a SINE B2 1 160 -33 1 1394 384 77 0 0 chr5 106058958 106059010 -46478249 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 1 1394 799 168 7 42 chr5 106059789 106059932 -46477327 + B1_Mur3 SINE Alu 10 147 -2 1 1394 857 293 8 32 chr5 106059942 106060192 -46477067 + B4A SINE B4 43 286 -6 1 1394 306 0 0 0 chr5 106060201 106060235 -46477024 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1394 1080 68 0 82 chr5 106060298 106060457 -46476802 + B1_Mus2 SINE Alu 2 147 0 1 1394 396 0 0 0 chr5 106060458 106060502 -46476757 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 1 1394 3311 50 8 2 chr5 106060716 106061114 -46476145 + MTB LTR MaLR 1 400 0 1 1394 570 98 0 0 chr5 106062056 106062138 -46475121 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 1 1394 2905 95 48 12 chr5 106062964 106063379 -46473880 + RLTR23 LTR ERV1 1 430 0 1 1394 675 239 129 144 chr5 106063891 106063973 -46473286 + MTEb LTR MaLR 106 175 -204 1 1394 613 212 225 0 chr5 106063973 106064133 -46473126 + B3 SINE B2 5 200 -16 1 1394 675 239 129 144 chr5 106064133 106064328 -46472931 + MTEb LTR MaLR 176 379 0 1 1394 514 283 60 33 chr5 106064862 106065012 -46472247 + ID_B1 SINE B4 18 171 -53 1 1394 587 303 92 22 chr5 106065070 106065343 -46471916 + B4A SINE B4 1 292 0 1 1394 465 211 216 6 chr5 106066322 106066503 -46470756 + ID_B1 SINE B4 1 219 -5 1 1394 1457 68 16 10 chr5 106066509 106066703 -46470556 + B2_Mm2 SINE B2 1 195 0 1 1394 810 211 0 0 chr5 106067085 106067218 -46470041 + B1_Mur3 SINE Alu 10 142 -7 1 1394 308 24 0 24 chr5 106067220 106067262 -46469997 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 1394 483 18 0 0 chr5 106067262 106067318 -46469941 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 1 1394 442 159 88 33 chr5 106067332 106067423 -46469836 + RSINE1 SINE B4 26 121 -44 1 1394 704 118 59 0 chr5 106067438 106067540 -46469719 + B2_Mm2 SINE B2 62 169 -26 1 1394 1101 74 0 0 chr5 106067554 106067702 -46469557 + (GAA)n Simple_repeat Simple_repeat 3 150 0 1 1394 340 206 53 27 chr5 106067736 106067811 -46469448 + B3 SINE B2 3 79 -137 1 1394 415 264 45 18 chr5 106067862 106067974 -46469285 - PB1D7 SINE Alu -3 117 3 1 1394 339 255 18 70 chr5 106067883 106067997 -46469262 - ID_B1 SINE B4 -48 176 69 1 1394 225 210 113 0 chr5 106068099 106068161 -46469098 + L2a LINE L2 3315 3383 -43 1 1394 504 117 0 0 chr5 106068233 106068310 -46468949 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 1 1394 787 106 8 24 chr5 106068312 106068438 -46468821 - B1_Mus1 SINE Alu 0 148 25 1 1394 2596 115 46 74 chr5 106069959 106070420 -46466839 - RLTR11B LTR ERVK 0 453 6 1 1394 610 308 51 78 chr5 106070507 106070764 -46466495 - B4A SINE B4 -2 290 41 1 1394 767 167 23 8 chr5 106070862 106070995 -46466264 + B1_Mur2 SINE Alu 3 137 -12 1 1394 432 99 0 0 chr5 106070995 106071066 -46466193 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1394 252 0 0 0 chr5 106071066 106071094 -46466165 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1394 456 293 120 54 chr5 106071205 106071389 -46465870 - B3A SINE B2 0 198 3 1 1394 201 162 0 0 chr5 106072500 106072537 -46464722 + T-rich Low_complexity Low_complexity 1 37 0 1 1394 542 293 33 54 chr5 106072736 106072920 -46464339 + MER58A DNA MER1_type 8 187 -37 1 1394 380 309 48 8 chr5 106073171 106073295 -46463964 - ID_B1 SINE B4 0 224 96 1 1394 1222 119 11 0 chr5 106073296 106073473 -46463786 + B2_Mm1t SINE B2 1 179 -14 1 1394 360 124 0 39 chr5 106073520 106073587 -46463672 + B2_Mm2 SINE B2 47 109 -107 1 1394 2168 141 101 8 chr5 106073953 106074338 -46462921 + MTC LTR MaLR 1 421 0 1 1394 238 346 62 16 chr5 106074463 106074592 -46462667 + MLT1B LTR MaLR 7 141 -249 1 1394 237 180 0 0 chr5 106074694 106074744 -46462515 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1394 638 228 0 7 chr5 106074804 106075084 -46462175 + (CA)n Simple_repeat Simple_repeat 1 277 0 1 1394 227 336 93 14 chr5 106075179 106075318 -46461941 - MIRb SINE MIR 0 268 119 1 1394 180 204 78 39 chr5 106075700 106075751 -46461508 - L3 LINE CR1 -36 4453 4401 1 1394 308 258 112 10 chr5 106075937 106076035 -46461224 - ID_B1 SINE B4 -7 217 110 1 1394 1271 109 15 45 chr5 106076878 106077079 -46460180 - B2_Mm2 SINE B2 0 195 1 1 1394 205 324 14 0 chr5 106077240 106077314 -46459945 + GA-rich Low_complexity Low_complexity 1 75 0 1 1394 229 254 209 0 chr5 106077406 106077473 -46459786 - ID2 SINE ID -1 82 2 1 1394 371 288 80 33 chr5 106078299 106078450 -46458809 + ID_B1 SINE B4 65 222 -2 1 1394 465 19 0 0 chr5 106079320 106079374 -46457885 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 1 1394 1154 118 19 0 chr5 106079487 106079648 -46457611 - B2_Mm2 SINE B2 -30 165 2 1 1394 1177 62 0 0 chr5 106079692 106079836 -46457423 - B1_Mus2 SINE Alu -3 144 1 1 1394 475 288 39 64 chr5 106079944 106080100 -46457159 + ID_B1 SINE B4 73 224 0 1 1394 597 73 0 30 chr5 106080101 106080200 -46457059 + (GAAA)n Simple_repeat Simple_repeat 2 97 0 1 1394 348 243 149 50 chr5 106080856 106081077 -46456182 + L1MD LINE L1 4588 4830 -1316 1 1394 866 268 20 57 chr5 106081277 106081654 -46455605 + L1MD LINE L1 4954 5293 -853 1 1394 480 280 77 12 chr5 106081771 106081941 -46455318 + MLT1A0 LTR MaLR 185 365 0 1 1394 505 277 23 15 chr5 106082094 106082226 -46455033 + B1F SINE Alu 1 133 -16 1 1394 483 63 0 0 chr5 106082230 106082293 -46454966 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1394 635 208 136 45 chr5 106083046 106083222 -46454037 + B3A SINE B2 1 192 -6 1 1394 575 200 0 0 chr5 106085046 106085141 -46452118 + B2_Mm2 SINE B2 2 96 -99 1 1394 478 238 114 0 chr5 106085812 106085917 -46451342 - PB1D10 SINE Alu 0 117 1 1 1394 341 259 142 32 chr5 106085923 106086170 -46451089 + L1ME1 LINE L1 5694 5967 -212 1 1394 241 214 18 0 chr5 106086478 106086534 -46450725 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1394 378 115 0 0 chr5 106086534 106086595 -46450664 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1394 296 291 12 12 chr5 106086934 106087014 -46450245 + MLT1B LTR MaLR 261 340 -50 1 1394 272 297 104 50 chr5 106087137 106087378 -46449881 + L1MA5 LINE L1 5997 6250 -50 1 1394 2585 195 52 2 chr5 106087564 106088047 -46449212 - RLTR18B LTR ERVK -5 507 1 1 1394 360 43 0 0 chr5 106088593 106088639 -46448620 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1394 501 281 75 16 chr5 106088743 106088931 -46448328 - RLTR20B3 LTR ERVK -364 213 15 1 1394 278 277 77 0 chr5 106088956 106089021 -46448238 + B4A SINE B4 22 91 -201 1 1394 209 179 71 0 chr5 106089093 106089149 -46448110 + (TAGG)n Simple_repeat Simple_repeat 3 62 0 1 1394 239 313 197 8 chr5 106089149 106089281 -46447978 + B4 SINE B4 121 277 -15 1 1394 314 281 49 35 chr5 106089676 106089820 -46447439 - B4A SINE B4 -142 150 5 1 1394 186 43 0 0 chr5 106089910 106089933 -46447326 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1394 626 261 38 47 chr5 106090017 106090230 -46447029 + ID_B1 SINE B4 5 215 -9 1 1394 1399 82 38 0 chr5 106090312 106090496 -46446763 + B2_Mm2 SINE B2 3 193 -2 2 1394 1189 56 0 0 chr5 106090608 106090751 -46446508 + B1_Mus1 SINE Alu 5 147 -1 2 1394 209 58 57 19 chr5 106090752 106090805 -46446454 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 2 1394 573 292 149 25 chr5 106091532 106092171 -46445088 - L1MB5 LINE L1 -348 5826 5113 2 1394 307 296 86 30 chr5 106092384 106092408 -46444851 + L1ME2 LINE L1 5711 5734 -506 2 1394 971 120 106 28 chr5 106092408 106092588 -46444671 + B2_Mm2 SINE B2 2 195 0 2 1394 330 312 124 23 chr5 106092588 106092847 -46444412 + L1ME2 LINE L1 5737 6021 -143 2 1394 423 0 0 0 chr5 106092915 106092962 -46444297 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1394 228 35 0 0 chr5 106093607 106093636 -46443623 + (TTG)n Simple_repeat Simple_repeat 1 29 0 2 1394 248 0 31 0 chr5 106093703 106093735 -46443524 + (TATG)n Simple_repeat Simple_repeat 3 35 0 2 1394 1166 75 0 0 chr5 106093755 106093902 -46443357 + B1_Mus2 SINE Alu 1 147 0 2 1394 848 133 0 7 chr5 106093904 106094048 -46443211 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 2 1394 1405 82 0 58 chr5 106094066 106094273 -46442986 + B2_Mm2 SINE B2 1 195 0 2 1394 398 314 118 63 chr5 106094349 106094764 -46442495 + Lx8 LINE L1 7034 7471 -2 2 1394 817 186 7 0 chr5 106094826 106094966 -46442293 + B1_Mur4 SINE Alu 2 142 -8 2 1394 32 43 0 0 chr5 106095412 106095458 -46441801 + AT_rich Low_complexity Low_complexity 1 46 0 2 1394 279 277 75 72 chr5 106095518 106095837 -46441422 + ORR1B1-int LTR MaLR 435 754 -755 2 1394 1154 29 0 7 chr5 106095736 106095877 -46441382 + B1_Mus2 SINE Alu 7 146 -1 2 1394 830 240 5 32 chr5 106095891 106096076 -46441183 + B3 SINE B2 27 206 -10 2 1394 2211 219 47 132 chr5 106096291 106096913 -46440346 + MTC-int LTR MaLR 363 1063 -195 2 1394 1152 76 0 0 chr5 106096913 106097057 -46440202 - B1_Mm SINE Alu 0 147 4 2 1394 203 61 0 29 chr5 106097057 106097091 -46440168 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 2 1394 2211 220 38 81 chr5 106097091 106097159 -46440100 + MTC-int LTR MaLR 1064 1133 -125 2 1394 707 145 97 22 chr5 106097156 106097168 -46440091 - B1_Mur4 SINE Alu 0 150 141 2 1394 210 37 0 0 chr5 106097168 106097195 -46440064 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1394 707 145 97 22 chr5 106097195 106097316 -46439943 - B1_Mur4 SINE Alu -10 140 7 2 1394 553 227 42 7 chr5 106097328 106097470 -46439789 + MTC-int LTR MaLR 1112 1258 0 2 1394 2084 140 111 19 chr5 106097470 106097848 -46439411 + MTC LTR MaLR 1 413 -8 2 1394 381 328 151 26 chr5 106098069 106098301 -46438958 - MER21B LTR ERV1 -81 782 522 2 1394 698 318 150 3 chr5 106098407 106098694 -46438565 - MER21B LTR ERV1 -534 329 1 2 1394 335 345 81 52 chr5 106098833 106099044 -46438215 - LTR16A1 LTR ERVL -229 227 11 2 1394 222 286 0 0 chr5 106099044 106099093 -46438166 - L2 LINE L2 -773 2646 2598 2 1394 343 340 42 36 chr5 106099159 106099327 -46437932 - MIR SINE MIR -62 200 32 2 1394 677 303 9 18 chr5 106099602 106099827 -46437432 + ID_B1 SINE B4 1 223 -1 2 1394 1014 184 81 14 chr5 106100057 106100266 -46436993 + URR1A DNA MER1_type 2 224 -2 2 1394 210 206 0 0 chr5 106100386 106100454 -46436805 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1394 758 81 9 0 chr5 106100474 106100585 -46436674 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 2 1394 1475 132 192 23 chr5 106100631 106100979 -46436280 - RMER17C LTR ERVK -3 407 1 2 1394 2325 129 83 0 chr5 106101954 106102302 -46434957 + ORR1C1 LTR MaLR 2 378 0 2 1394 329 191 0 0 chr5 106102425 106102488 -46434771 + (CAGA)n Simple_repeat Simple_repeat 1 63 0 2 1394 304 88 29 29 chr5 106102490 106102560 -46434699 + (CAGAGA)n Simple_repeat Simple_repeat 2 71 0 2 1394 972 211 28 28 chr5 106102576 106102791 -46434468 + B3 SINE B2 1 215 -1 2 1394 620 277 124 41 chr5 106102963 106103230 -46434029 - B4A SINE B4 -1 291 3 2 1394 1451 69 11 0 chr5 106103260 106103449 -46433810 - B2_Mm2 SINE B2 -3 192 2 2 1394 1052 123 7 0 chr5 106103478 106103624 -46433635 + B1_Mus1 SINE Alu 2 148 0 2 1394 355 299 31 10 chr5 106103682 106103780 -46433479 - RSINE1 SINE B4 -60 105 6 2 1394 187 310 27 27 chr5 106104192 106104265 -46432994 - MIR3 SINE MIR 0 208 136 2 1394 219 250 19 0 chr5 106104343 106104395 -46432864 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 1394 400 300 99 48 chr5 106104410 106104683 -46432576 - B4A SINE B4 -1 291 5 2 1394 845 265 9 23 chr5 106104714 106104930 -46432329 - ID_B1 SINE B4 -10 214 2 2 1394 768 117 258 7 chr5 106104967 106105122 -46432137 + B2_Mm2 SINE B2 2 195 0 2 1394 888 260 9 33 chr5 106105157 106105368 -46431891 + B3 SINE B2 8 213 -3 2 1394 703 182 50 0 chr5 106105467 106105588 -46431671 - RSINE1 SINE B4 -37 128 2 2 1394 278 253 75 12 chr5 106105737 106105817 -46431442 + MLT1G3 LTR MaLR 150 234 -361 2 1394 277 355 19 0 chr5 106106057 106106113 -46431146 + ID SINE ID 24 81 -143 2 1394 341 239 274 0 chr5 106106113 106106226 -46431033 + B1F1 SINE Alu 1 144 -5 2 1394 231 325 24 36 chr5 106106174 106106257 -46431002 + B4 SINE B4 170 251 -41 2 1394 283 271 95 19 chr5 106106259 106106417 -46430842 + L1MA9 LINE L1 5961 6139 -173 2 1394 341 242 15 0 chr5 106106432 106106498 -46430761 - ID4 SINE ID -15 68 2 2 1394 233 208 14 0 chr5 106106509 106106581 -46430678 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1394 241 338 0 0 chr5 106106621 106106689 -46430570 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1394 348 266 54 27 chr5 106106718 106106830 -46430429 + L1MA9 LINE L1 6197 6311 -1 2 1394 692 184 96 0 chr5 106107229 106107354 -46429905 - B1_Mur1 SINE Alu -1 148 12 2 1394 356 268 121 93 chr5 106107230 106107370 -46429889 - B4 SINE B4 -69 223 80 2 1394 354 62 0 0 chr5 106107383 106107431 -46429828 + B1_Mus2 SINE Alu 95 142 -5 2 1394 1210 55 0 0 chr5 106107571 106107716 -46429543 + B1_Mm SINE Alu 3 147 0 2 1394 306 0 0 0 chr5 106107716 106107750 -46429509 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1394 760 80 0 0 chr5 106107759 106107859 -46429400 - RLTR13B4 LTR ERVK 0 929 830 2 1394 2243 19 0 4 chr5 106107857 106108119 -46429140 - RLTR13B4 LTR ERVK -229 574 314 2 1394 1395 57 0 6 chr5 106108109 106108284 -46428975 - RLTR13B4 LTR ERVK -755 174 1 2 1394 794 293 10 0 chr5 106108472 106108677 -46428582 + ID_B1 SINE B4 12 218 -6 2 1394 348 314 16 8 chr5 106108694 106108816 -46428443 - Lx7 LINE L1 -1934 5762 5640 2 1394 349 216 52 113 chr5 106108816 106108931 -46428328 - ID_B1 SINE B4 -104 120 13 2 1394 354 169 0 0 chr5 106110320 106110379 -46426880 - PB1D9 SINE Alu -60 60 2 2 1394 279 296 0 48 chr5 106110379 106110423 -46426836 - B4 SINE B4 -147 145 48 2 1394 516 315 47 0 chr5 106110434 106110647 -46426612 + ID_B1 SINE B4 1 223 -1 2 1394 231 270 0 86 chr5 106110809 106110890 -46426369 + tRNA-Ala-GCY_ tRNA tRNA 2 75 0 2 1394 285 294 15 0 chr5 106110893 106110961 -46426298 + ID_B1 SINE B4 156 224 0 2 1394 350 324 23 23 chr5 106111680 106111857 -46425402 + (TATG)n Simple_repeat Simple_repeat 2 178 0 2 1394 271 312 22 34 chr5 106111808 106111987 -46425272 + (TA)n Simple_repeat Simple_repeat 2 178 0 2 1394 289 301 41 24 chr5 106111914 106112084 -46425175 + (TATATG)n Simple_repeat Simple_repeat 3 175 0 2 1394 204 125 0 0 chr5 106112092 106112124 -46425135 + (TATG)n Simple_repeat Simple_repeat 1 32 0 2 1394 395 293 149 35 chr5 106112180 106112435 -46424824 - B4A SINE B4 0 292 9 2 1394 1162 147 30 68 chr5 106112453 106112687 -46424572 + URR1B DNA MER1_type 1 225 0 2 1394 578 271 149 37 chr5 106112899 106113229 -46424030 - MTEb LTR MaLR -5 374 8 2 1394 192 171 0 0 chr5 106113259 106113294 -46423965 - MIRc SINE MIR -128 140 106 2 1394 428 296 9 9 chr5 106113353 106113469 -46423790 + PB1D9 SINE Alu 3 118 -2 2 1394 620 250 7 0 chr5 106113487 106113635 -46423624 + B1_Mur1 SINE Alu 1 149 0 2 1394 749 204 193 0 chr5 106113678 106113859 -46423400 + ID_B1 SINE B4 1 216 -8 2 1394 330 87 0 0 chr5 106113900 106113946 -46423313 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2 1394 227 82 0 88 chr5 106114215 106114295 -46422964 + (CACCC)n Simple_repeat Simple_repeat 3 75 0 2 1394 1194 60 20 1 chr5 106114383 106114543 -46422716 + B2_Mm2 SINE B2 2 163 -30 2 1394 297 0 0 0 chr5 106114543 106114576 -46422683 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 2 1394 1121 109 23 17 chr5 106114576 106114592 -46422667 + B2_Mm1t SINE B2 164 179 -14 2 1394 1262 54 0 0 chr5 106114788 106114936 -46422323 + B1_Mus1 SINE Alu 1 148 0 2 1394 252 0 0 0 chr5 106114936 106114964 -46422295 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1394 498 325 91 0 chr5 106115580 106115777 -46421482 + ID_B1 SINE B4 2 216 -8 2 1394 336 238 16 0 chr5 106116230 106116293 -46420966 + ID SINE ID 7 70 -154 2 1394 693 340 62 21 chr5 106116583 106116922 -46420337 + MLT1A LTR MaLR 10 362 -12 2 1394 267 169 159 58 chr5 106117036 106117105 -46420154 + PB1D10 SINE Alu 42 117 0 2 1394 23 0 0 0 chr5 106117110 106117133 -46420126 + AT_rich Low_complexity Low_complexity 1 23 0 2 1394 273 238 11 56 chr5 106117202 106117291 -46419968 + L1M2 LINE L1 5738 5822 -475 2 1394 664 260 56 19 chr5 106117303 106117465 -46419794 + B3A SINE B2 6 172 -26 2 1394 551 15 15 0 chr5 106117465 106117533 -46419726 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1394 310 301 62 89 chr5 106117533 106117549 -46419710 + B2_Mm1t SINE B2 163 178 -15 2 1394 468 0 0 0 chr5 106117594 106117646 -46419613 + (TTTTA)n Simple_repeat Simple_repeat 4 55 0 2 1394 607 195 73 0 chr5 106117646 106117765 -46419494 - B1_Mur2 SINE Alu -12 137 1 2 1394 25 0 0 0 chr5 106117902 106117927 -46419332 + AT_rich Low_complexity Low_complexity 1 25 0 2 1394 1004 161 0 84 chr5 106117935 106118125 -46419134 + B2_Mm2 SINE B2 1 174 -21 2 1394 465 158 0 0 chr5 106118127 106118209 -46419050 + (TA)n Simple_repeat Simple_repeat 1 82 0 2 1394 243 79 0 0 chr5 106118210 106118248 -46419011 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 2 1394 707 240 70 20 chr5 106118910 106119110 -46418149 + ID_B1 SINE B4 2 211 -13 2 1394 252 133 33 16 chr5 106119143 106119204 -46418055 + GA-rich Low_complexity Low_complexity 4 65 0 3 1394 1026 73 16 28 chr5 106119209 106119391 -46417868 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 3 1394 1263 103 32 16 chr5 106120785 106120973 -46416286 - B2_Mm1t SINE B2 -1 192 2 3 1394 711 306 41 5 chr5 106121154 106121351 -46415908 + ID_B1 SINE B4 8 211 -13 3 1394 806 316 146 14 chr5 106121445 106121869 -46415390 - MER21B LTR ERV1 -14 849 370 3 1394 273 354 74 68 chr5 106122013 106122189 -46415070 - MER21B LTR ERV1 -668 195 19 3 1394 276 317 58 19 chr5 106122511 106122614 -46414645 - MLT2B2 LTR ERVL -72 490 384 3 1394 2565 193 71 7 chr5 106122620 106123157 -46414102 - RMER15 LTR ERVL -4 571 1 3 1394 276 77 0 0 chr5 106123365 106123404 -46413855 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1394 236 189 117 0 chr5 106123421 106123489 -46413770 - ORR1E LTR MaLR -19 360 271 3 1394 552 294 37 40 chr5 106123572 106123842 -46413417 - ORR1E LTR MaLR -106 268 1 3 1394 358 341 64 43 chr5 106123842 106124029 -46413230 - L2 LINE L2 -791 2628 2438 3 1394 1650 32 11 0 chr5 106124186 106124376 -46412883 - B2_Mm1t SINE B2 -1 192 1 3 1394 252 0 0 0 chr5 106124512 106124540 -46412719 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1394 895 121 62 113 chr5 106124688 106124883 -46412376 + B2_Mm2 SINE B2 2 186 -9 3 1394 1238 41 7 0 chr5 106124894 106125040 -46412219 + B1_Mus2 SINE Alu 1 147 0 3 1394 399 294 16 16 chr5 106125472 106125600 -46411659 + ID_B1 SINE B4 78 205 -19 3 1394 714 333 5 5 chr5 106126240 106126457 -46410802 - ID_B1 SINE B4 -3 221 5 3 1394 462 202 60 10 chr5 106126553 106126653 -46410606 + PB1D9 SINE Alu 16 120 0 3 1394 1150 110 65 16 chr5 106126658 106126843 -46410416 + B2_Mm2 SINE B2 1 194 -1 3 1394 422 237 248 6 chr5 106126856 106127013 -46410246 + B3A SINE B2 1 195 -3 3 1394 308 250 94 19 chr5 106127044 106127150 -46410109 + PB1D10 SINE Alu 2 115 -2 3 1394 310 264 87 43 chr5 106127306 106127318 -46409941 + YREP_Mm Unknown Unknown 171 290 -1522 3 1394 515 176 87 10 chr5 106127318 106127421 -46409838 - ID_B1 SINE B4 -6 218 108 3 1394 1124 76 0 7 chr5 106127429 106127575 -46409684 - B1_Mus1 SINE Alu -2 146 2 3 1394 217 274 11 39 chr5 106129054 106129236 -46408023 + (CCG)n Simple_repeat Simple_repeat 2 178 0 3 1394 56 48 0 0 chr5 106131273 106131357 -46405902 + AT_rich Low_complexity Low_complexity 1 84 0 3 1394 390 254 42 50 chr5 106131523 106131643 -46405616 - PB1D7 SINE Alu 0 120 2 3 1394 330 239 71 27 chr5 106132074 106132186 -46405073 + MER20 DNA MER1_type 5 121 -98 3 1394 723 281 99 33 chr5 106132403 106132675 -46404584 + B4A SINE B4 1 290 -2 3 1394 191 318 200 0 chr5 106133008 106133093 -46404166 - L3 LINE CR1 -91 4398 4297 3 1394 229 307 98 80 chr5 106134071 106134102 -46403157 - MT2B2 LTR ERVL -251 333 302 3 1394 297 0 0 0 chr5 106134102 106134135 -46403124 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 3 1394 229 307 98 80 chr5 106134135 106134266 -46402993 - MT2B2 LTR ERVL -283 301 168 3 1394 723 259 59 64 chr5 106134142 106134344 -46402915 - ID_B1 SINE B4 -23 201 1 3 1394 287 253 12 37 chr5 106134614 106134696 -46402563 + ID4_ SINE ID 4 83 0 3 1394 454 277 148 14 chr5 106134814 106135037 -46402222 + CR1_Mam LINE CR1 1363 1615 -589 3 1394 1222 112 0 26 chr5 106135264 106135456 -46401803 - B2_Mm2 SINE B2 -8 187 1 3 1394 27 0 0 0 chr5 106135466 106135493 -46401766 + AT_rich Low_complexity Low_complexity 1 27 0 3 1394 398 238 68 19 chr5 106135493 106135596 -46401663 - PB1D10 SINE Alu -8 109 2 3 1394 501 233 200 12 chr5 106136081 106136246 -46401013 + B4 SINE B4 1 196 -96 3 1394 222 255 0 0 chr5 106136428 106136479 -46400780 + (CACG)n Simple_repeat Simple_repeat 1 51 0 3 1394 270 309 16 23 chr5 106136524 106136653 -46400606 + (CATATA)n Simple_repeat Simple_repeat 6 133 0 3 1394 284 370 0 0 chr5 106137217 106137309 -46399950 - ID_B1 SINE B4 -28 196 105 3 1394 309 26 0 0 chr5 106137433 106137471 -46399788 + (A)n Simple_repeat Simple_repeat 1 38 0 3 1394 235 186 23 0 chr5 106137531 106137574 -46399685 + Charlie18a DNA MER1_type 293 336 -6 3 1394 967 160 111 16 chr5 106137690 106137880 -46399379 - ORR1C2 LTR MaLR 0 384 177 3 1394 246 132 283 0 chr5 106137939 106137992 -46399267 - ORR1C2 LTR MaLR -316 68 1 3 1394 290 211 13 78 chr5 106138188 106138265 -46398994 + ID4 SINE ID 8 79 -4 3 1394 323 300 185 0 chr5 106138401 106138531 -46398728 + RSINE1 SINE B4 2 155 -10 3 1394 360 274 12 12 chr5 106138626 106138711 -46398548 - ID SINE ID -139 85 1 3 1394 202 164 0 35 chr5 106139202 106139259 -46398000 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1394 459 152 0 0 chr5 106139258 106139337 -46397922 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 1394 481 208 18 12 chr5 106139368 106139538 -46397721 + (TG)n Simple_repeat Simple_repeat 1 171 0 3 1394 766 197 164 50 chr5 106139547 106139809 -46397450 - B4A SINE B4 0 292 1 3 1394 458 233 21 93 chr5 106140409 106140564 -46396695 - RSINE1 SINE B4 -6 159 19 3 1394 390 21 0 0 chr5 106140854 106140901 -46396358 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1394 565 164 39 0 chr5 106140924 106141028 -46396231 - PB1D9 SINE Alu 0 120 13 3 1394 356 193 240 58 chr5 106141028 106141045 -46396214 - ID_B1 SINE B4 -1 223 81 3 1394 516 45 0 0 chr5 106141063 106141130 -46396129 + (TC)n Simple_repeat Simple_repeat 1 67 0 3 1394 354 194 132 28 chr5 106141158 106141264 -46395995 - RSINE1 SINE B4 -33 132 16 3 1394 491 245 135 20 chr5 106141542 106141742 -46395517 - Charlie8 DNA MER1_type -2166 262 40 3 1394 382 277 80 7 chr5 106141859 106141997 -46395262 - B1_Mur1 SINE Alu -1 148 1 3 1394 853 107 14 0 chr5 106142046 106142186 -46395073 + (CA)n Simple_repeat Simple_repeat 1 142 0 3 1394 308 203 43 14 chr5 106142742 106142812 -46394447 - ID_B1 SINE B4 -4 220 149 3 1394 898 237 15 49 chr5 106142826 106143030 -46394229 - B3 SINE B2 -4 212 16 3 1394 603 155 25 41 chr5 106143361 106143482 -46393777 - PB1D9 SINE Alu -1 119 1 3 1394 214 280 143 45 chr5 106143600 106143712 -46393547 - MIRb SINE MIR -26 242 120 3 1394 275 231 46 103 chr5 106143752 106143839 -46393420 - MIR SINE MIR -158 104 23 3 1394 258 205 0 0 chr5 106143850 106143889 -46393370 - B1_Mus1 SINE Alu -109 39 1 3 1394 186 43 0 0 chr5 106144016 106144039 -46393220 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1394 438 252 35 9 chr5 106144048 106144164 -46393095 - PB1D7 SINE Alu 0 120 2 3 1394 198 0 0 0 chr5 106145124 106145146 -46392113 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1394 274 269 50 60 chr5 106146048 106146148 -46391111 - B4A SINE B4 -60 105 6 3 1394 485 221 29 0 chr5 106146158 106146262 -46390997 - PB1D10 SINE Alu -6 111 5 3 1394 382 250 81 60 chr5 106146621 106146770 -46390489 - B4A SINE B4 0 292 141 3 1394 208 244 0 0 chr5 106147356 106147397 -46389862 + (TTG)n Simple_repeat Simple_repeat 3 43 0 3 1394 196 149 0 41 chr5 106147768 106147817 -46389442 + CT-rich Low_complexity Low_complexity 3 49 0 3 1394 1235 61 0 0 chr5 106147817 106147965 -46389294 - B1_Mus1 SINE Alu 0 148 1 3 1394 642 225 25 0 chr5 106147970 106148111 -46389148 - B1_Mur1 SINE Alu -5 145 1 3 1394 645 278 30 15 chr5 106148143 106148340 -46388919 - ID_B1 SINE B4 -8 216 17 3 1394 469 177 79 114 chr5 106149480 106149620 -46387639 + B1_Mur1 SINE Alu 12 146 -3 3 1394 721 199 59 0 chr5 106149817 106149953 -46387306 + B1_Mur3 SINE Alu 5 148 -1 3 1394 2214 206 44 23 chr5 106150612 106150693 -46386566 - RLTR16 LTR ERVK -12 493 417 3 1394 351 0 0 0 chr5 106150693 106150732 -46386527 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1394 2214 206 44 23 chr5 106150732 106151131 -46386128 - RLTR16 LTR ERVK -89 416 3 3 1394 315 262 23 35 chr5 106151254 106151341 -46385918 - PB1D7 SINE Alu -1 119 34 3 1394 277 140 20 0 chr5 106151526 106151576 -46385683 + B3 SINE B2 164 214 -2 3 1394 35 0 0 0 chr5 106151685 106151720 -46385539 + AT_rich Low_complexity Low_complexity 1 35 0 3 1394 288 0 0 0 chr5 106152394 106152426 -46384833 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1394 582 323 12 0 chr5 106152760 106152927 -46384332 - B4A SINE B4 -121 171 3 3 1394 986 226 35 20 chr5 106152969 106153172 -46384087 - B3 SINE B2 -3 213 8 3 1394 2972 11 54 6 chr5 106153172 106153522 -46383737 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1394 28015 21 1 1 chr5 106153522 106156793 -46380466 - IAPEz-int LTR ERVK 0 6481 3210 3 1394 5806 109 118 91 chr5 106156792 106158064 -46379195 - IAPEz-int LTR ERVK -5168 1313 8 3 1394 2948 14 54 6 chr5 106158064 106158414 -46378845 - IAPLTR1_Mm LTR ERVK 0 367 1 3 1394 512 211 28 19 chr5 106158472 106158578 -46378681 + B1_Mur1 SINE Alu 19 125 -24 3 1394 352 291 98 10 chr5 106159632 106159788 -46377471 + MIRb SINE MIR 20 180 -82 3 1394 420 215 175 56 chr5 106160126 106160269 -46376990 - RSINE1 SINE B4 -4 161 2 3 1394 645 244 0 0 chr5 106160334 106160461 -46376798 + RSINE1 SINE B4 26 152 -13 3 1394 295 260 103 10 chr5 106162604 106162701 -46374558 - PB1D9 SINE Alu -12 108 3 3 1394 465 227 141 7 chr5 106162915 106163057 -46374202 - RSINE1 SINE B4 -3 162 2 3 1394 243 0 0 0 chr5 106163374 106163401 -46373858 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1394 30 45 0 0 chr5 106163502 106163546 -46373713 + AT_rich Low_complexity Low_complexity 1 44 0 3 1394 499 243 0 27 chr5 106164157 106164267 -46372992 + PB1D9 SINE Alu 1 107 -13 3 1394 251 271 0 0 chr5 106164271 106164330 -46372929 + GA-rich Low_complexity Low_complexity 2 60 0 3 1394 248 194 40 0 chr5 106164377 106164445 -46372814 + PB1D9 SINE Alu 51 125 -25 3 1394 487 94 47 0 chr5 106164446 106164531 -46372728 + (CAGA)n Simple_repeat Simple_repeat 2 90 0 3 1394 334 105 0 69 chr5 106164590 106164663 -46372596 + B1_Mus2 SINE Alu 53 149 -1 3 1394 21 36 0 0 chr5 106164664 106164692 -46372567 + AT_rich Low_complexity Low_complexity 1 28 0 3 1394 356 207 67 33 chr5 106164717 106164807 -46372452 + PB1D9 SINE Alu 25 117 -3 4 1394 592 292 138 0 chr5 106165007 106165202 -46372057 + ID_B1 SINE B4 1 222 -2 4 1394 602 158 25 4 chr5 106166613 106166893 -46370366 + (TG)n Simple_repeat Simple_repeat 1 286 0 4 1394 215 125 0 0 chr5 106167390 106167422 -46369837 - B3A SINE B2 -165 33 2 4 1394 574 145 0 29 chr5 106167549 106167670 -46369589 - B1_Mur2 SINE Alu -2 118 8 4 1394 288 331 76 15 chr5 106167589 106167721 -46369538 - B4A SINE B4 -125 167 28 4 174 316 214 44 67 chr5 106168307 106168397 -46368862 + PB1D10 SINE Alu 30 117 0 4 1395 219 139 0 0 chr5 106168467 106168503 -46368756 + (CATG)n Simple_repeat Simple_repeat 3 38 0 4 1395 707 190 12 118 chr5 106168524 106168685 -46368574 + B1_Mur3 SINE Alu 1 144 -5 4 1395 224 289 185 22 chr5 106168707 106168799 -46368460 - ID_B1 SINE B4 -37 187 81 4 1395 1320 111 16 5 chr5 106168820 106169011 -46368248 - B2_Mm2 SINE B2 -2 193 1 4 1395 270 312 12 0 chr5 106169253 106169333 -46367926 - ID4 SINE ID 0 83 3 4 1395 750 287 38 0 chr5 106169399 106169608 -46367651 - ID_B1 SINE B4 -4 220 4 4 1395 819 171 13 40 chr5 106170256 106170408 -46366851 - B1_Mur2 SINE Alu 0 149 2 4 1395 769 242 19 6 chr5 106170418 106170593 -46366666 - ID_B1 SINE B4 -2 222 43 4 1395 21 0 0 0 chr5 106170593 106170614 -46366645 + AT_rich Low_complexity Low_complexity 1 21 0 4 1395 189 0 0 0 chr5 106170862 106170883 -46366376 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1395 324 314 13 127 chr5 106171867 106172024 -46365235 - RSINE1 SINE B4 -24 141 3 4 1395 591 211 23 30 chr5 106172440 106172572 -46364687 - B1_Mur1 SINE Alu -1 148 18 4 1395 331 282 109 0 chr5 106173020 106173130 -46364129 - RSINE1 SINE B4 -6 159 38 4 1395 2227 82 6 67 chr5 106173138 106173480 -46363779 - ORR1A2 LTR MaLR 0 327 7 4 1395 190 345 33 22 chr5 106173646 106173738 -46363521 + MIR3 SINE MIR 93 185 -23 4 1395 725 125 7 0 chr5 106174676 106174828 -46362431 + (TG)n Simple_repeat Simple_repeat 1 153 0 4 1395 1505 145 152 50 chr5 106174995 106175336 -46361923 + ORR1C2 LTR MaLR 7 382 -2 4 1395 255 31 0 0 chr5 106175467 106175499 -46361760 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 4 1395 535 127 291 0 chr5 106175702 106175812 -46361447 + B1_Mus1 SINE Alu 1 142 -6 4 1395 189 107 0 0 chr5 106175826 106175854 -46361405 + (G)n Simple_repeat Simple_repeat 1 28 0 4 1395 272 158 18 0 chr5 106176839 106176896 -46360363 + CT-rich Low_complexity Low_complexity 2 59 0 4 1395 207 0 0 0 chr5 106177124 106177147 -46360112 + (GGA)n Simple_repeat Simple_repeat 1 23 0 4 1395 424 348 25 31 chr5 106177316 106177476 -46359783 - RSINE1 SINE B4 -3 162 4 4 1395 972 114 64 0 chr5 106177492 106177632 -46359627 - B1_Mur4 SINE Alu -1 149 1 4 1395 226 0 59 0 chr5 106177643 106177677 -46359582 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 4 1395 912 127 119 6 chr5 106177679 106177838 -46359421 + B2_Mm2 SINE B2 1 177 -18 4 1395 313 308 16 57 chr5 106177847 106177971 -46359288 + L1ME4a LINE L1 5953 6071 -53 4 1395 299 125 41 14 chr5 106177976 106178049 -46359210 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1395 578 283 83 10 chr5 106178081 106178274 -46358985 - B3A SINE B2 -8 208 2 4 1395 198 0 0 0 chr5 106178290 106178312 -46358947 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1395 297 176 0 0 chr5 106178618 106178692 -46358567 + CT-rich Low_complexity Low_complexity 1 74 0 4 1395 226 188 98 24 chr5 106179594 106179676 -46357583 + MLT1F-int LTR MaLR 369 456 -1033 4 1395 1273 41 0 0 chr5 106180401 106180547 -46356712 - B1_Mus1 SINE Alu -1 147 2 4 1395 243 204 0 58 chr5 106180706 106180758 -46356501 - ID_B1 SINE B4 -2 222 174 4 1395 390 161 159 3 chr5 106180712 106180808 -46356451 - B1_Mus2 SINE Alu -8 112 5 4 1395 1272 255 184 38 chr5 106181101 106181271 -46355988 - RCHARR1 DNA MER1_type -290 684 495 4 1395 245 29 0 29 chr5 106181271 106181306 -46355953 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4 1395 998 51 0 170 chr5 106181306 106181391 -46355868 - B1_Mus1 SINE Alu -10 138 66 4 1395 1681 31 0 0 chr5 106181391 106181583 -46355676 + B2_Mm1a SINE B2 1 192 -1 4 1395 998 51 0 170 chr5 106181583 106181662 -46355597 - B1_Mus1 SINE Alu -83 65 2 4 1395 1272 255 184 38 chr5 106181662 106182065 -46355194 - RCHARR1 DNA MER1_type -480 494 27 4 1395 405 0 0 0 chr5 106183558 106183603 -46353656 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1395 812 242 133 4 chr5 106183606 106183847 -46353412 - B4 SINE B4 -18 274 3 4 1395 735 42 0 0 chr5 106184135 106184230 -46353029 + (CA)n Simple_repeat Simple_repeat 1 95 0 4 1395 321 270 0 153 chr5 106184337 106184363 -46352896 + RSINE1 SINE B4 55 75 -90 4 1395 432 0 0 0 chr5 106184363 106184411 -46352848 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1395 321 270 0 153 chr5 106184411 106184515 -46352744 + RSINE1 SINE B4 76 165 0 4 1395 327 275 63 33 chr5 106185796 106186050 -46351209 - L1M4 LINE L1 -490 5688 5381 4 1395 668 284 144 0 chr5 106186300 106186564 -46350695 - Lx7 LINE L1 -432 7264 6963 4 1395 400 187 4 0 chr5 106186837 106186911 -46350348 - B1F2 SINE Alu -50 77 1 4 1395 239 261 103 52 chr5 106187411 106187508 -46349751 - PB1D10 SINE Alu -2 115 14 4 1395 261 0 0 0 chr5 106187587 106187616 -46349643 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1395 608 279 81 48 chr5 106187972 106188271 -46348988 - MTEa LTR MaLR 0 379 73 4 1395 774 236 102 5 chr5 106188314 106188510 -46348749 + B3 SINE B2 2 216 0 4 1395 306 189 108 0 chr5 106189147 106189221 -46348038 - B1_Mur1 SINE Alu -19 130 49 4 1395 315 315 30 30 chr5 106189282 106189413 -46347846 - B4A SINE B4 0 292 162 4 1395 439 124 200 11 chr5 106190885 106190975 -46346284 - PB1D9 SINE Alu -12 108 2 4 1395 24 0 0 0 chr5 106191685 106191709 -46345550 + AT_rich Low_complexity Low_complexity 1 24 0 4 1395 475 327 26 20 chr5 106191713 106191866 -46345393 - RSINE1 SINE B4 -8 157 4 4 1395 468 0 0 0 chr5 106191866 106191918 -46345341 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1395 306 0 0 0 chr5 106191920 106191954 -46345305 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 4 1395 560 14 14 0 chr5 106192102 106192171 -46345088 + (TCCC)n Simple_repeat Simple_repeat 1 70 0 4 1395 243 301 0 17 chr5 106192431 106192546 -46344713 + C-rich Low_complexity Low_complexity 1 113 0 4 1395 735 214 7 54 chr5 106193081 106193229 -46344030 - B1_Mur2 SINE Alu -8 141 1 4 1395 1321 178 46 23 chr5 106193585 106193844 -46343415 - MTC LTR MaLR -155 266 2 4 1395 255 226 0 16 chr5 106194162 106194225 -46343034 + B3A SINE B2 4 65 -133 4 1395 234 91 0 0 chr5 106194340 106194373 -46342886 + (TGAG)n Simple_repeat Simple_repeat 3 35 0 4 1395 250 286 175 0 chr5 106194546 106194562 -46342697 - B1F SINE Alu -1 148 1 4 1395 282 309 82 0 chr5 106194562 106194672 -46342587 - ID_B1 SINE B4 -24 200 82 4 1395 1670 26 0 10 chr5 106194682 106194875 -46342384 - B2_Mm1a SINE B2 -2 191 1 4 1395 213 379 11 0 chr5 106195683 106195770 -46341489 + L3 LINE CR1 4227 4314 -175 4 1395 2625 68 29 6 chr5 106195915 106196269 -46340990 - MTB LTR MaLR -23 377 28 4 1395 1757 150 67 52 chr5 106196679 106197081 -46340178 - RMER17C LTR ERVK 0 410 3 4 1395 855 243 16 11 chr5 106197273 106197460 -46339799 - B3 SINE B2 -4 212 25 4 1395 542 230 42 62 chr5 106197454 106197598 -46339661 - B1F2 SINE Alu -8 141 1 4 1395 234 91 0 0 chr5 106199029 106199062 -46338197 + (CAGG)n Simple_repeat Simple_repeat 3 35 0 4 1395 445 321 81 62 chr5 106199906 106200165 -46337094 - B4 SINE B4 -2 290 27 4 1395 1270 34 7 0 chr5 106200741 106200887 -46336372 - B1_Mus2 SINE Alu 0 147 1 4 1395 953 255 93 90 chr5 106201603 106201926 -46335333 - MTE2b LTR MaLR -52 327 4 4 1395 212 324 54 0 chr5 106202470 106202544 -46334715 - L2b LINE L2 -31 3344 3267 4 1395 279 0 0 0 chr5 106202554 106202585 -46334674 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 4 1395 290 67 22 0 chr5 106202679 106202724 -46334535 + (TATG)n Simple_repeat Simple_repeat 1 46 0 4 1395 532 252 151 29 chr5 106202724 106202863 -46334396 - B3A SINE B2 -32 166 11 4 1395 474 49 0 12 chr5 106202881 106202987 -46334272 - B2_Mm2 SINE B2 -8 187 47 4 1395 1370 74 23 0 chr5 106203016 106203192 -46334067 - B2_Mm2 SINE B2 -15 180 1 4 1395 734 294 32 5 chr5 106203223 106203411 -46333848 + B3A SINE B2 6 198 0 4 1395 807 215 105 24 chr5 106204010 106204220 -46333039 + B4A SINE B4 25 251 -41 4 1395 3375 38 2 5 chr5 106204996 106205393 -46331866 + MTA_Mm LTR MaLR 1 396 0 4 1395 272 243 40 0 chr5 106206648 106206722 -46330537 - B1F SINE Alu -72 77 1 4 1395 212 209 23 0 chr5 106207138 106207181 -46330078 - ID4 SINE ID -13 70 27 4 1395 930 260 115 20 chr5 106207828 106208229 -46329030 + L1MC3 LINE L1 7344 7782 -3 4 1395 328 286 0 13 chr5 106208245 106208323 -46328936 + PB1D10 SINE Alu 29 105 -12 4 1395 305 296 20 0 chr5 106208706 106208804 -46328455 - L1MC4a LINE L1 -9 7873 7774 4 1395 1579 26 0 54 chr5 106209059 106209263 -46327996 + B2_Mm1a SINE B2 1 193 0 4 1395 202 204 0 0 chr5 106209263 106209278 -46327981 + A-rich Low_complexity Low_complexity 1 15 0 4 1395 1662 22 0 0 chr5 106209278 106209463 -46327796 + B2_Mm1a SINE B2 2 186 -7 4 1395 202 204 0 0 chr5 106209463 106209491 -46327768 + A-rich Low_complexity Low_complexity 16 43 0 5 1395 312 308 95 9 chr5 106209603 106209813 -46327446 - L1MC4a LINE L1 -564 7318 7091 4 1395 286 305 9 37 chr5 106210303 106210412 -46326847 + B1_Mus1 SINE Alu 1 106 -42 5 1395 381 93 0 0 chr5 106210795 106210849 -46326410 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 5 1395 901 85 85 8 chr5 106210854 106210984 -46326275 - B1_Mur3 SINE Alu -5 144 5 5 1395 291 281 424 12 chr5 106211611 106211774 -46325485 + MLT1B LTR MaLR 146 375 -15 5 1395 484 271 24 8 chr5 106212077 106212200 -46325059 + B1F SINE Alu 1 125 -24 5 1395 243 88 0 0 chr5 106212928 106212962 -46324297 + (CG)n Simple_repeat Simple_repeat 2 35 0 5 1395 369 0 0 0 chr5 106212962 106213002 -46324257 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1395 755 165 0 6 chr5 106213368 106213545 -46323714 + (TG)n Simple_repeat Simple_repeat 1 176 0 5 1395 331 358 75 0 chr5 106214475 106214595 -46322664 + RSINE1 SINE B4 3 131 -34 5 1395 21 0 0 0 chr5 106216153 106216174 -46321085 + AT_rich Low_complexity Low_complexity 1 21 0 5 1395 359 266 75 0 chr5 106217236 106217330 -46319929 + ID_B1 SINE B4 1 101 -123 5 1395 517 95 0 0 chr5 106217323 106217397 -46319862 - ORR1A2 LTR MaLR -253 74 1 5 1395 654 167 9 0 chr5 106217900 106218008 -46319251 - URR1B DNA MER1_type 0 225 117 5 1395 1222 61 0 0 chr5 106218127 106218274 -46318985 - B1_Mus2 SINE Alu 0 147 1 5 1395 278 139 0 0 chr5 106218274 106218317 -46318942 - URR1B DNA MER1_type -94 131 89 5 1395 296 316 97 23 chr5 106218822 106218997 -46318262 + MIR3 SINE MIR 12 199 -9 5 1395 686 282 69 5 chr5 106220871 106221060 -46316199 + B3 SINE B2 2 202 -14 5 1395 180 111 0 0 chr5 106221063 106221090 -46316169 + (TGGA)n Simple_repeat Simple_repeat 3 29 0 5 1395 21 0 0 0 chr5 106221327 106221348 -46315911 + GC_rich Low_complexity Low_complexity 1 21 0 5 1395 3328 51 44 5 chr5 106222992 106223405 -46313854 + L1Md_F2 LINE L1 6142 6570 -12 5 1395 187 273 0 0 chr5 106223801 106223845 -46313414 - L2c LINE L2 -55 3332 3289 5 1395 203 339 38 30 chr5 106224016 106224147 -46313112 - MIR3 SINE MIR -20 188 57 5 1395 198 0 0 0 chr5 106224746 106224768 -46312491 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 5 1395 578 236 14 28 chr5 106224768 106224904 -46312355 - B1F2 SINE Alu -13 136 1 5 1395 420 239 0 52 chr5 106224916 106225031 -46312228 - PB1D10 SINE Alu 0 117 9 5 1395 280 270 0 16 chr5 106224976 106225040 -46312219 - B4A SINE B4 -145 147 85 5 1395 345 256 183 75 chr5 106225592 106225778 -46311481 + B3 SINE B2 1 206 -10 5 1395 342 0 0 0 chr5 106226173 106226211 -46311048 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 5 1395 30 0 0 0 chr5 106226276 106226306 -46310953 + AT_rich Low_complexity Low_complexity 1 30 0 5 1395 371 318 56 56 chr5 106226825 106226985 -46310274 - ID_B1 SINE B4 -42 182 23 5 1395 183 337 68 97 chr5 106227443 106227650 -46309609 + L2c LINE L2 3144 3344 -43 5 1395 552 56 0 0 chr5 106227839 106227911 -46309348 + (GA)n Simple_repeat Simple_repeat 1 72 0 5 1395 203 176 0 0 chr5 106227929 106227963 -46309296 + (TATATG)n Simple_repeat Simple_repeat 4 37 0 5 1395 538 310 85 50 chr5 106227972 106228254 -46309005 - B4A SINE B4 0 292 1 5 1395 1053 150 0 0 chr5 106228302 106228482 -46308777 + (TGG)n Simple_repeat Simple_repeat 1 180 0 5 1395 629 264 0 30 chr5 106228483 106228651 -46308608 - HAL1-2a_MD LINE L1 -517 2507 2345 5 1395 280 294 140 11 chr5 106228777 106228870 -46308389 - MIRb SINE MIR -62 206 102 5 1395 459 0 0 0 chr5 106230206 106230257 -46307002 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1395 270 95 0 0 chr5 106230478 106230520 -46306739 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1395 278 221 56 42 chr5 106231351 106231422 -46305837 + MER92C LTR ERV1 483 554 0 5 1395 1157 90 0 0 chr5 106231651 106231796 -46305463 - B1_Mus1 SINE Alu 0 148 4 5 1395 386 260 0 0 chr5 106232267 106232344 -46304915 - ID4 SINE ID -5 78 2 5 1395 392 259 8 4 chr5 106232658 106232911 -46304348 + (TG)n Simple_repeat Simple_repeat 1 254 0 5 1395 287 242 0 29 chr5 106232944 106233012 -46304247 - ID2 SINE ID -15 68 3 5 1395 22 0 0 0 chr5 106233019 106233041 -46304218 + AT_rich Low_complexity Low_complexity 1 22 0 5 1395 404 51 17 0 chr5 106233064 106233123 -46304136 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1395 478 280 15 39 chr5 106233459 106233589 -46303670 + RSINE1 SINE B4 2 128 -37 5 1395 405 0 0 0 chr5 106233609 106233654 -46303605 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1395 354 74 0 0 chr5 106233654 106233708 -46303551 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1395 228 43 21 42 chr5 106234154 106234202 -46303057 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 5 1395 240 269 0 0 chr5 106234271 106234323 -46302936 + (CATG)n Simple_repeat Simple_repeat 2 53 0 5 1395 2468 79 28 0 chr5 106234402 106234719 -46302540 + ORR1A3 LTR MaLR 1 326 0 5 1395 483 99 28 0 chr5 106234810 106234881 -46302378 + PB1D9 SINE Alu 36 108 -12 5 1395 518 255 97 32 chr5 106235680 106235834 -46301425 - RSINE1 SINE B4 0 165 2 5 1395 194 428 26 0 chr5 106236791 106236943 -46300316 - L4 LINE RTE -1169 860 705 5 1395 28 0 0 0 chr5 106237019 106237047 -46300212 + AT_rich Low_complexity Low_complexity 1 28 0 5 1395 184 140 0 57 chr5 106237445 106237498 -46299761 + C-rich Low_complexity Low_complexity 2 51 0 5 1395 368 283 29 48 chr5 106237639 106237743 -46299516 + PB1D10 SINE Alu 5 106 -11 5 1395 489 304 40 0 chr5 106239981 106240052 -46297207 + ID SINE ID 8 84 -140 5 1395 268 298 107 11 chr5 106240052 106240159 -46297100 + PB1D7 SINE Alu 1 105 -15 5 1395 227 258 62 31 chr5 106240103 106240167 -46297092 - ID SINE ID -155 69 4 5 1395 315 122 0 0 chr5 106243562 106243611 -46293648 + (TCC)n Simple_repeat Simple_repeat 3 51 0 5 1395 200 184 0 0 chr5 106243760 106243798 -46293461 + CT-rich Low_complexity Low_complexity 3 40 0 5 1395 23 33 0 0 chr5 106244187 106244217 -46293042 + AT_rich Low_complexity Low_complexity 1 30 0 5 1395 220 171 0 0 chr5 106244544 106244579 -46292680 + polypyrimidine Low_complexity Low_complexity 2 36 0 5 1395 491 292 97 24 chr5 106244579 106244786 -46292473 - ID_B1 SINE B4 0 224 3 5 1395 289 206 16 16 chr5 106244786 106244850 -46292409 - B1_Mus2 SINE Alu -22 125 62 5 1395 222 91 0 0 chr5 106245431 106245464 -46291795 + (CCCG)n Simple_repeat Simple_repeat 3 35 0 5 1395 243 88 0 0 chr5 106245645 106245679 -46291580 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1395 493 222 143 17 chr5 106245784 106245903 -46291356 + B1_Mur1 SINE Alu 4 137 -12 5 1395 345 315 109 27 chr5 106246067 106246214 -46291045 - RSINE1 SINE B4 -3 162 4 5 1395 783 273 90 14 chr5 106246216 106246428 -46290831 - B4A SINE B4 -63 229 2 5 1395 507 281 123 20 chr5 106247057 106247260 -46289999 - ID_B1 SINE B4 0 224 1 5 1395 214 234 188 0 chr5 106249050 106249114 -46288145 + ID2 SINE ID 7 82 -1 5 1395 511 312 56 28 chr5 106249156 106249298 -46287961 + RSINE1 SINE B4 16 161 -4 5 1395 904 230 0 6 chr5 106249698 106249873 -46287386 - B3 SINE B2 -4 212 39 5 1395 437 193 0 11 chr5 106250004 106250093 -46287166 + PB1D9 SINE Alu 33 120 0 5 1395 873 181 0 20 chr5 106250979 106251131 -46286128 - B1_Mur4 SINE Alu 0 150 2 5 1395 421 250 134 15 chr5 106251137 106251271 -46285988 + RMER5 LTR ERV1 126 275 -259 5 1395 668 320 77 21 chr5 106251286 106251519 -46285740 + B4A SINE B4 3 248 -44 5 1395 462 290 21 92 chr5 106251594 106251833 -46285426 + RMER5 LTR ERV1 296 517 -17 5 1395 788 164 15 12 chr5 106252597 106252933 -46284326 + (TG)n Simple_repeat Simple_repeat 1 337 0 5 1395 614 167 35 13 chr5 106252961 106253271 -46283988 + (TG)n Simple_repeat Simple_repeat 1 316 0 5 1395 366 23 0 0 chr5 106254286 106254329 -46282930 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1395 329 206 16 0 chr5 106254363 106254426 -46282833 - B4 SINE B4 0 292 229 5 1395 665 233 53 13 chr5 106254931 106255083 -46282176 - RSINE1 SINE B4 -4 161 4 5 1395 641 320 54 14 chr5 106255086 106255308 -46281951 - B4A SINE B4 -61 231 1 5 1395 532 244 190 15 chr5 106255365 106255502 -46281757 + RSINE1 SINE B4 5 165 0 5 1395 330 289 0 0 chr5 106255503 106255652 -46281607 + (CA)n Simple_repeat Simple_repeat 2 150 0 5 1395 203 271 136 0 chr5 106256045 106256163 -46281096 + L2a LINE L2 2819 2952 -467 5 1395 195 257 113 14 chr5 106256198 106256269 -46280990 + L2a LINE L2 3031 3108 -318 5 1395 445 260 44 62 chr5 106256271 106256431 -46280828 - MLT1B LTR MaLR -37 353 197 5 1395 336 119 0 0 chr5 106256433 106256492 -46280767 + (GCCTG)n Simple_repeat Simple_repeat 1 59 0 5 1395 840 193 176 6 chr5 106256583 106256765 -46280494 - B3 SINE B2 -3 213 1 5 1395 180 111 0 0 chr5 106256988 106257015 -46280244 + (GGA)n Simple_repeat Simple_repeat 2 28 0 5 1395 420 329 71 19 chr5 106257289 106257444 -46279815 - RMER30 DNA MER1_type -38 164 2 5 1395 782 230 68 10 chr5 106257927 106258133 -46279126 + ID_B1 SINE B4 2 219 -5 5 1395 598 231 217 11 chr5 106258599 106258783 -46278476 + ID_B1 SINE B4 1 222 -2 5 1395 786 149 0 0 chr5 106258869 106259003 -46278256 + (TCCC)n Simple_repeat Simple_repeat 3 136 0 5 1395 297 0 0 0 chr5 106259005 106259038 -46278221 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 5 1395 959 245 117 0 chr5 106259057 106259314 -46277945 - B4A SINE B4 -1 291 5 5 1395 243 274 0 16 chr5 106259531 106259594 -46277665 - RSINE1 SINE B4 -17 148 87 5 1395 283 327 92 18 chr5 106260099 106260208 -46277051 - B3A SINE B2 -5 193 77 5 1395 339 284 32 4 chr5 106260214 106260326 -46276933 - PB1D10 SINE Alu -30 119 3 6 1395 320 250 31 0 chr5 106260567 106260631 -46276628 + ID SINE ID 3 68 -156 6 1395 433 260 29 9 chr5 106260631 106260736 -46276523 + PB1D10 SINE Alu 1 107 -10 6 1395 646 200 176 0 chr5 106260778 106260903 -46276356 + B1_Mur2 SINE Alu 3 149 0 6 1395 467 311 25 15 chr5 106261726 106261922 -46275337 + B3A SINE B2 1 198 0 6 1395 888 284 90 15 chr5 106262071 106262211 -46275048 - B4A SINE B4 -3 289 132 6 1395 2319 81 18 64 chr5 106262211 106262554 -46274705 + ORR1A2 LTR MaLR 1 327 0 6 1395 888 284 90 15 chr5 106262554 106262681 -46274578 - B4A SINE B4 -161 131 3 6 1395 516 262 119 25 chr5 106263624 106264022 -46273237 - RLTR15 LTR ERVK -19 340 1 6 1395 623 248 13 39 chr5 106264123 106264278 -46272981 - B3A SINE B2 0 198 48 6 1395 315 263 56 146 chr5 106264281 106264459 -46272800 + B4A SINE B4 8 169 -123 6 1395 817 233 113 16 chr5 106265576 106265833 -46271426 + B4 SINE B4 1 282 -10 6 1395 342 159 0 0 chr5 106265980 106266049 -46271210 + CT-rich Low_complexity Low_complexity 2 70 0 6 1395 306 50 0 0 chr5 106266050 106266090 -46271169 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1395 333 238 118 24 chr5 106266090 106266301 -46270958 + L1M4 LINE L1 5102 5332 -814 6 1395 531 322 41 64 chr5 106266339 106266634 -46270625 + L1M4 LINE L1 5327 5614 -564 6 1395 859 247 182 23 chr5 106266658 106266965 -46270294 + MTD LTR MaLR 64 419 0 6 1395 864 252 142 17 chr5 106266970 106267265 -46269994 - MTEa LTR MaLR 0 379 48 6 1395 787 241 89 0 chr5 106268265 106268456 -46268803 - B3 SINE B2 -5 211 4 6 1395 358 277 279 22 chr5 106268458 106268687 -46268572 - B4A SINE B4 -4 288 1 6 1395 1391 219 29 53 chr5 106268881 106269258 -46268001 + ORR1D2 LTR MaLR 1 368 -2 6 1395 288 91 0 0 chr5 106269287 106269331 -46267928 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1395 571 363 37 29 chr5 106269418 106269662 -46267597 - MER21B LTR ERV1 -178 685 440 6 1395 15257 19 1 0 chr5 106269662 106271488 -46265771 + L1Md_T LINE L1 3760 5586 -297 6 1395 9199 4 0 0 chr5 106271488 106272484 -46264775 + L1Md_T LINE L1 5587 6582 0 6 1395 551 285 188 5 chr5 106272494 106272702 -46264557 - MER21B LTR ERV1 -423 440 195 6 1395 306 73 0 0 chr5 106272850 106272891 -46264368 + (TATG)n Simple_repeat Simple_repeat 4 44 0 6 1395 290 271 142 33 chr5 106273031 106273214 -46264045 - MER21-int LTR ERV1 -64 4127 3925 6 1395 883 286 17 37 chr5 106273879 106274129 -46263130 + B4A SINE B4 1 247 -45 6 1395 1410 76 11 5 chr5 106274129 106274314 -46262945 + B2_Mm2 SINE B2 2 187 -8 6 1395 883 286 17 37 chr5 106274314 106274361 -46262898 + B4A SINE B4 248 292 0 6 1395 324 211 0 0 chr5 106274362 106274438 -46262821 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 1395 375 23 0 0 chr5 106274557 106274601 -46262658 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1395 647 219 22 45 chr5 106274603 106274737 -46262522 - RSINE1 SINE B4 -33 132 2 6 1395 288 333 0 0 chr5 106274745 106274826 -46262433 - ID4_ SINE ID 0 83 3 6 1395 1343 58 64 0 chr5 106275098 106275269 -46261990 + B2_Mm1a SINE B2 3 184 -9 6 1395 191 375 14 0 chr5 106275533 106275605 -46261654 - MIR3 SINE MIR -27 181 109 6 1395 180 0 0 0 chr5 106275875 106275895 -46261364 + (CACCAT)n Simple_repeat Simple_repeat 3 22 0 6 1395 352 287 36 153 chr5 106276135 106276357 -46260902 + MLT1F LTR MaLR 302 497 -51 6 1395 269 295 0 0 chr5 106276481 106276542 -46260717 + B1_Mur4 SINE Alu 59 119 -31 6 1395 186 0 0 81 chr5 106276546 106276583 -46260676 + (CAAAAA)n Simple_repeat Simple_repeat 5 38 0 6 1395 319 242 156 62 chr5 106276621 106276749 -46260510 - ID_B1 SINE B4 0 224 85 6 1395 353 315 13 59 chr5 106277145 106277297 -46259962 - ID_B1 SINE B4 -67 157 13 6 1395 226 300 104 18 chr5 106277875 106278038 -46259221 + RMER15 LTR ERVL 347 523 -52 6 1395 308 229 33 0 chr5 106279248 106279309 -46257950 + MER81 DNA AcHobo 52 114 0 6 1395 203 146 0 24 chr5 106279353 106279395 -46257864 + (TATG)n Simple_repeat Simple_repeat 3 43 0 6 1395 258 259 0 0 chr5 106281307 106281388 -46255871 + T-rich Low_complexity Low_complexity 1 81 0 6 1395 1002 119 39 17 chr5 106281739 106281763 -46255496 - B2_Mm1t SINE B2 -7 186 162 6 1395 456 19 0 0 chr5 106281763 106281816 -46255443 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1395 1141 60 1 0 chr5 106281816 106281971 -46255288 - B2_Mm2 SINE B2 -32 161 3 6 1395 426 238 40 0 chr5 106282280 106282322 -46254937 + ID SINE ID 39 85 -139 6 1395 268 248 79 0 chr5 106282322 106282423 -46254836 + PB1D10 SINE Alu 1 109 -8 6 1395 9050 97 26 72 chr5 106282558 106282808 -46254451 - RLTR21 LTR ERVK -26 1546 1289 6 1395 198 0 0 0 chr5 106282808 106282830 -46254429 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1395 9050 97 26 72 chr5 106282830 106282998 -46254261 - RLTR21 LTR ERVK -284 1288 1150 6 1395 1203 114 11 17 chr5 106282998 106283177 -46254082 + B2_Mm1t SINE B2 2 179 -14 6 1395 9050 97 26 72 chr5 106283177 106283201 -46254058 - RLTR21 LTR ERVK -423 1149 1133 6 1395 411 56 0 0 chr5 106283201 106283255 -46254004 + (CATA)n Simple_repeat Simple_repeat 1 54 0 6 1395 9050 97 26 72 chr5 106283255 106284430 -46252829 - RLTR21 LTR ERVK -440 1132 1 6 1395 231 269 110 9 chr5 106284441 106284550 -46252709 + MLT1B LTR MaLR 259 378 -12 6 1395 631 146 105 23 chr5 106284889 106285022 -46252237 + B1F2 SINE Alu 5 148 -1 6 1395 183 42 0 0 chr5 106285023 106285047 -46252212 + (TAA)n Simple_repeat Simple_repeat 1 24 0 6 1395 327 297 36 55 chr5 106285734 106285752 -46251507 - ID_B1 SINE B4 -46 246 199 6 1395 331 252 109 27 chr5 106285752 106285862 -46251397 - B1F SINE Alu 0 149 31 6 1395 327 297 36 55 chr5 106285862 106285907 -46251352 - ID_B1 SINE B4 -46 198 68 6 1395 441 0 0 0 chr5 106287649 106287698 -46249561 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 6 1395 1029 54 39 0 chr5 106287698 106287828 -46249431 - B1_Mus1 SINE Alu -13 135 1 6 1395 186 306 63 40 chr5 106287914 106288040 -46249219 + MIRc SINE MIR 122 250 -18 6 1395 377 227 0 64 chr5 106288812 106288906 -46248353 + ID_B1 SINE B4 108 195 -29 6 1395 480 276 47 94 chr5 106289649 106289766 -46247493 + ID_B1 SINE B4 3 124 -100 6 1395 1140 71 0 0 chr5 106289766 106289907 -46247352 + B1_Mus1 SINE Alu 3 143 -5 6 1395 180 0 0 0 chr5 106289911 106289931 -46247328 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1395 480 276 47 94 chr5 106289931 106290000 -46247259 + ID_B1 SINE B4 125 185 -39 6 1395 220 257 100 0 chr5 106289943 106290013 -46247246 + B1F1 SINE Alu 48 124 -25 6 1395 333 0 0 0 chr5 106290016 106290053 -46247206 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 6 1395 860 176 0 39 chr5 106290064 106290218 -46247041 + B1_Mur3 SINE Alu 2 149 0 6 1395 762 202 197 0 chr5 106290394 106290572 -46246687 - ID_B1 SINE B4 -8 216 4 6 1395 1215 7 7 52 chr5 106291248 106291401 -46245858 + B1_Mus1 SINE Alu 3 148 0 6 1395 243 0 0 0 chr5 106291513 106291540 -46245719 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1395 827 138 226 17 chr5 106292814 106292991 -46244268 - B3 SINE B2 -2 214 1 6 1395 929 134 6 12 chr5 106293024 106293190 -46244069 - B2_Mm2 SINE B2 -29 166 2 6 1395 234 326 38 30 chr5 106293235 106293368 -46243891 - L1ME1 LINE L1 -1 6178 6045 6 1395 304 278 130 0 chr5 106293391 106293499 -46243760 + B1F SINE Alu 2 123 -26 6 1395 582 284 93 45 chr5 106293516 106293829 -46243430 - L1ME1 LINE L1 -141 6038 5711 6 1395 1620 26 5 20 chr5 106293863 106294059 -46243200 + B2_Mm1t SINE B2 1 193 0 6 1395 186 40 0 0 chr5 106294059 106294072 -46243187 + (A)n Simple_repeat Simple_repeat 1 13 0 6 1395 1659 42 0 0 chr5 106294072 106294264 -46242995 + B2_Mm1t SINE B2 2 193 0 6 1395 186 40 0 0 chr5 106294264 106294275 -46242984 + (A)n Simple_repeat Simple_repeat 1 11 0 6 1395 1213 203 168 10 chr5 106294275 106294584 -46242675 - MTD LTR MaLR -44 375 18 6 1395 279 71 0 0 chr5 106294590 106294632 -46242627 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 6 1395 410 209 224 11 chr5 106294640 106294819 -46242440 - L1ME1 LINE L1 -2185 5600 5387 6 1395 810 137 21 41 chr5 106294844 106294989 -46242270 - B1_Mus1 SINE Alu -6 142 1 6 1395 292 247 144 0 chr5 106295288 106295385 -46241874 + MTE-int LTR MaLR 790 900 -680 6 1395 1084 50 14 0 chr5 106296027 106296168 -46241091 + B1_Mus1 SINE Alu 4 146 -2 6 1395 880 143 0 0 chr5 106296198 106296331 -46240928 + B1_Mus2 SINE Alu 3 135 -12 6 1395 825 40 0 0 chr5 106296334 106296435 -46240824 + (GAAA)n Simple_repeat Simple_repeat 2 102 0 6 1395 351 261 86 60 chr5 106298207 106298358 -46238901 - B3A SINE B2 -43 155 1 6 1395 1124 81 19 0 chr5 106298716 106298877 -46238382 - B2_Mm2 SINE B2 -30 165 2 6 1395 1061 255 35 82 chr5 106298877 106299219 -46238040 + Lx9 LINE L1 6641 6966 -678 6 174 3131 107 103 38 chr5 106299225 106299757 -46237502 + RMER2 LTR ERV1 1 567 0 6 1396 947 251 122 39 chr5 106299855 106300191 -46237068 + Lx9 LINE L1 7011 7374 -270 6 1396 288 255 30 10 chr5 106300189 106300288 -46236971 + Lx9 LINE L1 7535 7635 -9 6 1396 418 207 45 11 chr5 106300664 106300795 -46236464 + B3 SINE B2 3 143 -52 6 1396 2712 49 0 12 chr5 106300850 106301179 -46236080 - ORR1A2 LTR MaLR 0 327 3 6 1396 1156 221 56 78 chr5 106301925 106302283 -46234976 + ORR1D1 LTR MaLR 25 374 0 6 1396 297 0 0 0 chr5 106302352 106302385 -46234874 + (TG)n Simple_repeat Simple_repeat 1 33 0 6 1396 423 0 0 0 chr5 106302494 106302541 -46234718 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1396 561 194 0 18 chr5 106302541 106302704 -46234555 + GA-rich Low_complexity Low_complexity 1 160 0 6 1396 721 251 22 22 chr5 106303290 106303473 -46233786 + B3A SINE B2 2 184 -14 6 1396 615 194 75 18 chr5 106303486 106303654 -46233605 + RMER19B LTR ERVK 1 176 -435 6 1396 939 116 85 37 chr5 106303657 106303845 -46233414 + RMER19B LTR ERVK 657 853 -49 6 1396 955 56 48 14 chr5 106303845 106303990 -46233269 + B2_Mm2 SINE B2 39 188 -7 6 1396 360 59 0 0 chr5 106304007 106304058 -46233201 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 6 1396 742 113 0 17 chr5 106304192 106304309 -46232950 - B2_Mm2 SINE B2 -79 116 2 6 1396 193 89 22 22 chr5 106305731 106305777 -46231482 + (CGGG)n Simple_repeat Simple_repeat 2 47 0 6 1396 225 0 0 0 chr5 106307997 106308022 -46229237 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1396 295 252 19 39 chr5 106308714 106308817 -46228442 - B3A SINE B2 -22 176 76 7 1396 288 318 320 26 chr5 106309581 106309853 -46227406 - L2a LINE L2 -5 3421 3070 7 1396 351 325 85 0 chr5 106310251 106310451 -46226808 - L2a LINE L2 -299 3127 2911 7 1396 337 333 60 43 chr5 106310452 106310637 -46226622 - MER20 DNA MER1_type -3 216 29 7 1396 273 298 97 0 chr5 106310922 106311036 -46226223 - L2a LINE L2 -600 2819 2695 7 1396 403 253 85 114 chr5 106311731 106311905 -46225354 - Charlie1a DNA MER1_type -690 765 597 7 1396 1386 65 38 0 chr5 106311905 106312089 -46225170 - B2_Mm2 SINE B2 -3 192 2 7 1396 403 253 85 114 chr5 106312089 106312195 -46225064 - Charlie1a DNA MER1_type -859 596 493 7 1396 955 247 276 26 chr5 106312195 106312698 -46224561 - Lx8 LINE L1 -12 7461 6833 7 1396 296 231 98 49 chr5 106312720 106312802 -46224457 - Lx8 LINE L1 -703 6770 6685 7 1396 861 276 124 40 chr5 106312871 106313267 -46223992 - Charlie1a DNA MER1_type -1024 431 3 7 1396 699 175 43 28 chr5 106313296 106313437 -46223822 + B1_Mus2 SINE Alu 4 146 -1 7 1396 342 0 0 0 chr5 106313505 106313543 -46223716 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1396 1223 115 28 0 chr5 106314782 106314964 -46222295 - B2_Mm2 SINE B2 -8 187 1 7 1396 922 127 35 0 chr5 106314985 106315127 -46222132 - B1_Mur4 SINE Alu -1 149 3 7 1396 275 104 0 20 chr5 106320507 106320556 -46216703 + (TATG)n Simple_repeat Simple_repeat 3 50 0 7 1396 384 311 16 16 chr5 106320556 106320680 -46216579 - RSINE1 SINE B4 -39 126 3 7 1396 741 236 14 0 chr5 106320747 106320887 -46216372 - B1_Mur1 SINE Alu -6 143 2 7 1396 610 284 120 39 chr5 106321222 106321655 -46215604 + L1M4 LINE L1 4735 5202 -944 7 1396 245 261 13 92 chr5 106321674 106321731 -46215528 + PB1D10 SINE Alu 36 92 -25 7 1396 621 72 0 0 chr5 106321731 106321814 -46215445 + (TTTTC)n Simple_repeat Simple_repeat 2 84 0 7 1396 1010 156 39 39 chr5 106321818 106321998 -46215261 - B2_Mm2 SINE B2 -14 181 2 7 1396 245 261 13 92 chr5 106321998 106322011 -46215248 + PB1D10 SINE Alu 93 105 -12 7 1396 458 229 98 28 chr5 106322019 106322234 -46215025 + L1M4 LINE L1 5206 5434 -746 7 1396 410 291 69 30 chr5 106322367 106322498 -46214761 - RSINE1 SINE B4 -28 137 2 7 1396 423 215 142 25 chr5 106322691 106322853 -46214406 + L1M4 LINE L1 5509 5689 -489 7 1396 274 94 0 54 chr5 106323041 106323067 -46214192 - B2_Mm1a SINE B2 -14 179 156 7 1396 2268 56 0 7 chr5 106323067 106323353 -46213906 - L1_Mus2 LINE L1 0 6566 6283 7 1396 274 94 0 54 chr5 106323353 106323382 -46213877 - B2_Mm1a SINE B2 -38 155 127 7 1396 861 106 0 0 chr5 106323423 106323546 -46213713 - B2_Mm2 SINE B2 -72 123 1 7 1396 25 0 0 0 chr5 106323648 106323673 -46213586 + AT_rich Low_complexity Low_complexity 1 25 0 7 1396 974 230 49 0 chr5 106323827 106324031 -46213228 - B3 SINE B2 0 216 3 7 1396 251 323 50 10 chr5 106324316 106324416 -46212843 - ID_B1 SINE B4 -40 184 81 7 1396 1093 277 28 18 chr5 106324467 106324750 -46212509 - B4A SINE B4 -6 286 1 7 1396 488 274 165 25 chr5 106324814 106325057 -46212202 - B4A SINE B4 -6 286 10 7 1396 784 218 105 35 chr5 106325091 106325291 -46211968 + B3 SINE B2 2 215 -1 7 1396 361 353 22 43 chr5 106325813 106325952 -46211307 + ID_B1 SINE B4 2 137 -87 7 1396 449 273 67 93 chr5 106326585 106326779 -46210480 + B3A SINE B2 2 190 -5 7 1396 324 286 61 0 chr5 106326826 106326924 -46210335 - B3 SINE B2 0 216 113 7 1396 2511 193 59 0 chr5 106326950 106327478 -46209781 - Lx9 LINE L1 -343 7301 6743 7 1396 16625 184 84 71 chr5 106327487 106330677 -46206582 - L1_Rod LINE L1 0 5847 2535 7 1396 833 133 86 0 chr5 106330677 106330805 -46206454 - B1_Mur4 SINE Alu -7 143 5 7 1396 16625 184 84 71 chr5 106330805 106331358 -46205901 - L1_Rod LINE L1 -3313 2534 2049 7 1396 861 112 97 0 chr5 106331358 106331492 -46205767 - B1_Mus1 SINE Alu 0 148 2 7 1396 16625 196 107 53 chr5 106331492 106332970 -46204289 - L1_Rod LINE L1 -3799 2048 494 7 1396 1153 96 73 11 chr5 106333933 106334112 -46203147 - B2_Mm2 SINE B2 -4 191 2 7 1396 182 159 167 45 chr5 106335381 106335447 -46201812 - MIRm SINE MIR -119 157 84 7 1396 21 36 0 0 chr5 106336177 106336205 -46201054 + AT_rich Low_complexity Low_complexity 1 28 0 7 1396 822 126 263 0 chr5 106336350 106336525 -46200734 + URR1B DNA MER1_type 2 222 -3 7 1396 441 136 273 0 chr5 106336531 106336641 -46200618 - URR1A DNA MER1_type -86 140 1 7 1396 460 289 66 13 chr5 106336755 106336906 -46200353 - B3 SINE B2 -56 160 2 7 1396 25 0 0 0 chr5 106336999 106337024 -46200235 + AT_rich Low_complexity Low_complexity 1 25 0 7 1396 357 241 103 0 chr5 106337253 106337340 -46199919 - PB1D10 SINE Alu -8 109 14 7 1396 335 212 255 31 chr5 106337653 106337814 -46199445 + B3A SINE B2 1 197 -1 7 1396 548 304 36 0 chr5 106338049 106338217 -46199042 + B3 SINE B2 2 175 -41 7 1396 506 269 118 48 chr5 106338418 106338684 -46198575 - ORR1D2 LTR MaLR -89 281 1 7 1396 223 200 0 0 chr5 106338697 106338737 -46198522 - ID4 SINE ID -42 41 2 7 1396 181 239 22 0 chr5 106339463 106339509 -46197750 + MIR SINE MIR 15 61 -201 7 1396 180 97 0 0 chr5 106340209 106340240 -46197019 + (TATTG)n Simple_repeat Simple_repeat 2 32 0 7 1396 317 262 157 71 chr5 106340744 106341011 -46196248 - B4 SINE B4 -1 291 2 7 1396 391 223 9 9 chr5 106341532 106341645 -46195614 + CT-rich Low_complexity Low_complexity 4 116 0 7 1396 919 98 0 29 chr5 106341653 106341789 -46195470 - B1_Mur3 SINE Alu -17 132 1 7 1396 571 292 127 38 chr5 106342068 106342335 -46194924 + B4A SINE B4 1 291 -1 7 1396 310 310 66 46 chr5 106343099 106343251 -46194008 + RSINE1 SINE B4 3 157 -8 7 1396 318 106 0 0 chr5 106343776 106343823 -46193436 + (GGA)n Simple_repeat Simple_repeat 2 48 0 7 1396 234 105 0 0 chr5 106343928 106343966 -46193293 + (GGA)n Simple_repeat Simple_repeat 1 38 0 7 1396 389 54 18 0 chr5 106345205 106345261 -46191998 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1396 386 235 153 7 chr5 106345276 106345413 -46191846 - B4A SINE B4 -4 288 132 7 1396 2560 121 86 99 chr5 106345461 106346087 -46191172 - RMER6A LTR ERVK -138 618 1 7 1396 432 264 28 9 chr5 106346087 106346184 -46191075 - RSINE1 SINE B4 -64 101 3 7 1396 678 180 107 0 chr5 106347410 106347560 -46189699 - B3 SINE B2 -3 213 48 7 1396 668 238 54 0 chr5 106348081 106348266 -46188993 + B3 SINE B2 10 204 -12 7 1396 325 184 204 53 chr5 106348609 106348741 -46188518 - RMER15 LTR ERVL -151 424 273 7 1396 189 0 0 0 chr5 106349520 106349541 -46187718 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 7 1396 268 286 13 13 chr5 106349543 106349621 -46187638 + PB1D10 SINE Alu 3 80 -37 7 1396 2169 96 57 3 chr5 106350488 106350823 -46186436 + MTB_Mm LTR MaLR 55 407 0 7 1396 22 0 0 0 chr5 106352639 106352661 -46184598 + AT_rich Low_complexity Low_complexity 1 22 0 7 1396 834 189 5 54 chr5 106352940 106353125 -46184134 - B3 SINE B2 -40 176 1 7 1396 768 264 52 24 chr5 106353177 106353390 -46183869 - MER20 DNA MER1_type 0 219 1 7 1396 187 226 174 23 chr5 106354418 106354504 -46182755 + L2a LINE L2 3237 3335 -91 7 1396 252 77 0 0 chr5 106354631 106354670 -46182589 + (A)n Simple_repeat Simple_repeat 1 39 0 7 1396 242 343 10 0 chr5 106354954 106355056 -46182203 + (TG)n Simple_repeat Simple_repeat 1 103 0 7 1396 516 32 0 0 chr5 106355751 106355813 -46181446 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1396 207 265 7 13 chr5 106356487 106356640 -46180619 + (TG)n Simple_repeat Simple_repeat 1 152 0 7 1396 329 189 0 10 chr5 106356678 106356774 -46180485 + (TG)n Simple_repeat Simple_repeat 2 96 0 7 1396 609 108 88 0 chr5 106357547 106357649 -46179610 + B1_Mus2 SINE Alu 28 138 -9 7 1396 306 0 0 0 chr5 106357649 106357683 -46179576 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1396 21 57 0 0 chr5 106359807 106359842 -46177417 + AT_rich Low_complexity Low_complexity 1 35 0 7 1396 560 280 39 28 chr5 106359898 106360078 -46177181 + B3A SINE B2 3 184 -14 7 1396 672 224 40 11 chr5 106360079 106360239 -46177020 + B3A SINE B2 1 157 -38 7 1396 369 0 0 0 chr5 106360239 106360280 -46176979 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1396 378 291 48 75 chr5 106360280 106360305 -46176954 + B2_Mm2 SINE B2 158 180 -15 7 1396 1279 27 0 0 chr5 106360326 106360472 -46176787 - B1_Mm SINE Alu 0 147 2 7 1396 1203 55 0 7 chr5 106360537 106360685 -46176574 + B1_Mm SINE Alu 1 147 0 7 1396 758 201 21 0 chr5 106360717 106360861 -46176398 + B1_Mur1 SINE Alu 2 148 -1 7 1396 303 49 0 0 chr5 106360863 106360904 -46176355 + (CAA)n Simple_repeat Simple_repeat 2 42 0 7 1396 3592 142 48 40 chr5 106361107 106361412 -46175847 - RMER6C LTR ERVK -1 689 367 7 1396 571 58 94 9 chr5 106361412 106361579 -46175680 + (CACTG)n Simple_repeat Simple_repeat 1 187 -304 7 1396 571 58 94 9 chr5 106361588 106361628 -46175631 + (CACTG)n Simple_repeat Simple_repeat 188 231 -260 7 1396 571 58 94 9 chr5 106361638 106361865 -46175394 + (CACTG)n Simple_repeat Simple_repeat 232 491 0 7 1396 3592 142 48 40 chr5 106361865 106362219 -46175040 - RMER6C LTR ERVK -328 362 1 7 1396 250 246 53 0 chr5 106362220 106362277 -46174982 + ID4 SINE ID 5 64 -19 7 1396 774 146 71 28 chr5 106362994 106363135 -46174124 + B1_Mur2 SINE Alu 2 148 -1 7 1396 920 153 70 50 chr5 106363623 106363822 -46173437 + Lx4B LINE L1 6855 7057 -1 7 1396 1114 50 0 28 chr5 106363971 106364116 -46173143 - B1_Mm SINE Alu -6 141 1 7 1396 303 270 113 0 chr5 106365253 106365368 -46171891 + Charlie4a DNA MER1_type 381 508 0 7 1396 267 295 71 62 chr5 106365562 106365674 -46171585 + PB1 SINE Alu 8 120 -7 7 1396 2718 57 3 0 chr5 106365833 106366169 -46171090 - L1_Mus2 LINE L1 -385 6181 5845 7 1396 2492 69 36 3 chr5 106366169 106366503 -46170756 + L1_Mus2 LINE L1 6222 6566 0 7 1396 619 241 33 40 chr5 106366733 106366884 -46170375 + B3A SINE B2 2 151 -47 7 1396 207 0 0 0 chr5 106367234 106367257 -46170002 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7 1396 1067 93 0 0 chr5 106367259 106367398 -46169861 - B1_Mus2 SINE Alu -6 141 3 7 1396 501 223 45 0 chr5 106367560 106367672 -46169587 + ID_B1 SINE B4 84 200 -24 7 1396 32 43 0 0 chr5 106367773 106367819 -46169440 + AT_rich Low_complexity Low_complexity 1 46 0 7 1396 748 156 28 22 chr5 106369099 106369436 -46167823 + CT-rich Low_complexity Low_complexity 1 338 0 7 1396 395 274 0 0 chr5 106369477 106369561 -46167698 - PB1D10 SINE Alu -19 98 15 7 1396 1913 183 30 5 chr5 106369803 106370203 -46167056 + MTC LTR MaLR 2 411 -10 8 1396 3133 74 2 5 chr5 106370205 106370613 -46166646 - MTB_Mm LTR MaLR 0 407 1 8 1396 2424 191 108 53 chr5 106370626 106371655 -46165604 + MTC-int LTR MaLR 1 1258 0 8 1396 1640 147 189 6 chr5 106371655 106372004 -46165255 + MTC LTR MaLR 1 413 -8 8 1396 2265 76 6 3 chr5 106372203 106372521 -46164738 + ORR1A2 LTR MaLR 1 319 -8 8 1396 224 232 108 61 chr5 106373593 106373720 -46163539 + MIR SINE MIR 29 160 -108 8 1396 1224 60 29 24 chr5 106374098 106375305 -46161954 + (TCTA)n Simple_repeat Simple_repeat 1 1212 0 8 1396 205 313 0 29 chr5 106375644 106375713 -46161546 + L2c LINE L2 3109 3175 -212 8 1396 232 285 95 24 chr5 106376113 106376239 -46161020 - B1F1 SINE Alu -1 148 14 8 1396 225 250 91 6 chr5 106376872 106377037 -46160222 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 8 1396 251 232 98 0 chr5 106377066 106377230 -46160029 + (CTGTG)n Simple_repeat Simple_repeat 1 180 0 8 1396 314 232 78 12 chr5 106377374 106377540 -46159719 + (CTGTG)n Simple_repeat Simple_repeat 1 177 0 8 1396 1145 170 92 0 chr5 106378454 106378660 -46158599 + URR1B DNA MER1_type 1 225 0 8 1396 420 293 6 94 chr5 106378866 106379047 -46158212 - ID_B1 SINE B4 0 224 60 8 1396 367 235 118 34 chr5 106379061 106379180 -46158079 + RSINE1 SINE B4 4 132 -33 8 1396 283 323 15 29 chr5 106379821 106379958 -46157301 + L2 LINE L2 2291 2425 -994 8 1396 626 289 6 40 chr5 106380404 106380577 -46156682 + MTEa LTR MaLR 3 169 -210 8 1396 324 0 0 0 chr5 106380809 106380845 -46156414 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 8 1396 1475 184 127 11 chr5 106381738 106382107 -46155152 - Lx9 LINE L1 -1 7643 7232 8 1396 187 286 16 0 chr5 106382910 106382973 -46154286 + L2 LINE L2 2707 2770 -649 8 1396 360 0 0 0 chr5 106383279 106383319 -46153940 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1396 431 274 40 0 chr5 106383321 106383445 -46153814 - B4 SINE B4 -127 165 37 8 1396 202 259 0 17 chr5 106383703 106383762 -46153497 + (TA)n Simple_repeat Simple_repeat 2 59 0 8 1396 208 226 19 0 chr5 106383918 106383971 -46153288 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1396 335 221 53 7 chr5 106383978 106384081 -46153178 - B3A SINE B2 -56 139 27 8 1396 324 269 151 0 chr5 106384114 106384233 -46153026 - L1MC4 LINE L1 -224 7818 7682 8 1396 530 260 48 42 chr5 106384249 106384438 -46152821 + Lx8 LINE L1 7200 7389 -84 8 1396 853 290 72 105 chr5 106384691 106385346 -46151913 - L1MC4 LINE L1 -608 7434 6802 8 1396 1887 191 34 88 chr5 106385350 106385791 -46151468 + MTD LTR MaLR 3 419 0 8 1396 634 239 7 47 chr5 106385805 106385839 -46151420 - B1_Mur2 SINE Alu 0 149 122 8 1396 4498 104 50 22 chr5 106385839 106386574 -46150685 + RMER6A LTR ERVK 1 756 0 8 1396 634 239 7 47 chr5 106386574 106386688 -46150571 - B1_Mur2 SINE Alu -28 121 7 8 1396 304 296 224 0 chr5 106386690 106386815 -46150444 - L1MC4 LINE L1 -1115 6767 6615 8 1396 594 233 0 0 chr5 106386993 106387173 -46150086 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1396 534 247 0 0 chr5 106387209 106387387 -46149872 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1396 519 247 0 0 chr5 106387405 106387579 -46149680 + (TG)n Simple_repeat Simple_repeat 1 174 0 8 1396 304 314 37 31 chr5 106387623 106387784 -46149475 - RSINE1 SINE B4 0 165 4 8 1396 618 267 145 28 chr5 106388485 106388774 -46148485 + RMER20B LTR ERVK 69 391 -236 8 1396 600 290 58 11 chr5 106388985 106389173 -46148086 + B3A SINE B2 1 197 -1 8 1396 303 28 0 0 chr5 106389213 106389249 -46148010 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1396 979 254 56 60 chr5 106389252 106389537 -46147722 - B4 SINE B4 -7 285 2 8 1396 180 0 0 0 chr5 106391124 106391144 -46146115 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 8 1396 438 176 0 0 chr5 106391919 106392004 -46145255 + GA-rich Low_complexity Low_complexity 2 86 0 8 1396 1126 225 144 24 chr5 106392174 106392548 -46144711 + MTD LTR MaLR 1 419 0 8 1396 913 252 11 74 chr5 106392716 106392999 -46144260 - B4 SINE B4 -2 290 26 8 1396 276 292 108 14 chr5 106393008 106393147 -46144112 - MER58A DNA MER1_type -12 212 61 8 1396 5159 176 40 14 chr5 106393366 106394376 -46142883 + Lx9 LINE L1 6609 7644 0 8 1396 543 229 0 19 chr5 106394419 106394724 -46142535 + (TG)n Simple_repeat Simple_repeat 1 299 0 8 1396 2145 99 38 13 chr5 106394724 106395042 -46142217 + ORR1A3 LTR MaLR 1 326 0 8 1396 543 184 0 32 chr5 106395042 106395049 -46142210 + (TG)n Simple_repeat Simple_repeat 1 7 0 8 1396 1581 47 5 0 chr5 106395134 106395324 -46141935 + B2_Mm1a SINE B2 1 191 -2 8 1396 800 150 8 0 chr5 106395950 106396347 -46140912 + (TG)n Simple_repeat Simple_repeat 1 400 0 8 1396 579 261 34 11 chr5 106396347 106396525 -46140734 - B3A SINE B2 -16 182 1 8 1396 25 0 0 0 chr5 106396528 106396553 -46140706 + AT_rich Low_complexity Low_complexity 1 25 0 8 1396 389 344 6 48 chr5 106396565 106396733 -46140526 - RSINE1 SINE B4 -4 161 1 8 1396 234 123 53 0 chr5 106397288 106397345 -46139914 + CT-rich Low_complexity Low_complexity 1 60 0 8 1396 829 29 78 9 chr5 106397655 106398082 -46139177 + (TG)n Simple_repeat Simple_repeat 1 456 0 8 1396 290 115 19 0 chr5 106398182 106398234 -46139025 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 8 1396 367 363 89 8 chr5 106398326 106398553 -46138706 + LTR16C LTR ERVL 1 246 -243 8 1396 647 273 90 88 chr5 106398553 106398930 -46138329 + MTEa LTR MaLR 1 378 -1 8 1396 392 300 83 74 chr5 106398941 106399104 -46138155 + LTR16C LTR ERVL 271 439 -50 8 1396 803 86 362 7 chr5 106399104 106399245 -46138014 + B2_Mm2 SINE B2 1 191 -4 8 1396 392 300 83 74 chr5 106399245 106399297 -46137962 + LTR16C LTR ERVL 440 488 -1 8 1396 389 215 86 0 chr5 106401773 106401866 -46135393 - ID_B1 SINE B4 0 224 124 8 1396 944 51 14 0 chr5 106401912 106402050 -46135209 - BGLII_Mus LTR ERVK 0 422 283 8 1396 509 88 12 24 chr5 106402050 106402132 -46135127 - RMER3D-int LTR ERVK -1072 1770 1690 8 1396 1041 156 196 0 chr5 106402202 106402381 -46134878 - B3 SINE B2 0 216 3 8 1396 555 308 40 13 chr5 106402750 106402977 -46134282 - B4A SINE B4 -59 233 1 8 1396 333 0 0 0 chr5 106404480 106404517 -46132742 + (A)n Simple_repeat Simple_repeat 1 37 0 8 1396 24 0 0 0 chr5 106405446 106405470 -46131789 + AT_rich Low_complexity Low_complexity 1 24 0 8 1396 243 0 0 0 chr5 106405521 106405548 -46131711 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1396 258 32 0 0 chr5 106406334 106406365 -46130894 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 8 1396 23 0 0 0 chr5 106407713 106407736 -46129523 + AT_rich Low_complexity Low_complexity 1 23 0 8 1396 354 108 0 0 chr5 106407984 106408049 -46129210 + (T)n Simple_repeat Simple_repeat 1 65 0 8 1396 26 0 0 0 chr5 106408659 106408685 -46128574 + AT_rich Low_complexity Low_complexity 1 26 0 8 1396 245 306 94 82 chr5 106408770 106408941 -46128318 - B4 SINE B4 -118 174 2 8 1396 242 279 183 0 chr5 106409137 106409241 -46128018 + PB1 SINE Alu 2 124 -3 8 1396 1325 90 37 11 chr5 106410828 106411018 -46126241 - B2_Mm2 SINE B2 0 195 1 8 1396 935 168 42 65 chr5 106411390 106411606 -46125653 - B3 SINE B2 -4 212 2 8 1396 338 282 36 24 chr5 106411651 106411818 -46125441 + (CATATA)n Simple_repeat Simple_repeat 1 169 0 8 1396 216 0 0 0 chr5 106411818 106411842 -46125417 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1396 381 43 0 0 chr5 106411842 106411888 -46125371 + (TA)n Simple_repeat Simple_repeat 2 48 0 8 1396 222 243 13 39 chr5 106411911 106411988 -46125271 + (CATATA)n Simple_repeat Simple_repeat 1 75 0 8 1396 586 240 45 85 chr5 106412007 106412230 -46125029 - ID_B1 SINE B4 -2 222 9 8 1396 3222 29 42 0 chr5 106412582 106412962 -46124297 - MTA_Mm LTR MaLR 0 396 1 8 1396 376 211 13 44 chr5 106414186 106414345 -46122914 + (TGGA)n Simple_repeat Simple_repeat 4 157 0 8 1396 266 148 0 18 chr5 106414685 106414740 -46122519 + GA-rich Low_complexity Low_complexity 2 55 0 8 1396 200 149 43 0 chr5 106415129 106415176 -46122083 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1396 235 367 75 0 chr5 106415187 106415334 -46121925 - B4A SINE B4 -8 284 127 8 1396 456 19 0 0 chr5 106416531 106416584 -46120675 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 1396 210 37 0 0 chr5 106416585 106416612 -46120647 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 8 1396 984 126 9 13 chr5 106417153 106417380 -46119879 + (TCTA)n Simple_repeat Simple_repeat 1 225 0 8 1396 686 297 56 32 chr5 106417409 106417694 -46119565 - B4A SINE B4 0 292 1 8 1396 204 376 18 0 chr5 106418401 106418510 -46118749 - L2c LINE L2 -2 3385 3275 8 1396 349 304 40 26 chr5 106419147 106419299 -46117960 + MIR SINE MIR 41 194 -68 8 1396 485 286 45 13 chr5 106419453 106419609 -46117650 - RSINE1 SINE B4 0 165 5 8 1396 198 103 0 0 chr5 106419634 106419663 -46117596 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1396 328 221 13 0 chr5 106419687 106419764 -46117495 - RSINE1 SINE B4 -35 130 53 8 1396 212 0 36 0 chr5 106420745 106420773 -46116486 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 8 1396 435 243 0 0 chr5 106421401 106421537 -46115722 + (TG)n Simple_repeat Simple_repeat 2 137 0 8 1396 25 0 0 0 chr5 106422091 106422116 -46115143 + AT_rich Low_complexity Low_complexity 1 25 0 8 1396 670 213 162 28 chr5 106422916 106423095 -46114164 + ID_B1 SINE B4 22 224 0 8 1396 3568 40 2 9 chr5 106423680 106424114 -46113145 - L1_Mus1 LINE L1 0 6567 6137 8 1396 180 0 0 0 chr5 106425608 106425628 -46111631 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 8 1396 1090 188 29 10 chr5 106426044 106426253 -46111006 + B3 SINE B2 1 213 -3 8 1396 644 93 0 10 chr5 106426338 106426436 -46110823 + (TCCC)n Simple_repeat Simple_repeat 2 98 0 8 1396 439 262 0 0 chr5 106426443 106426546 -46110713 - PB1D7 SINE Alu -17 103 1 8 1396 21 36 0 0 chr5 106426575 106426603 -46110656 + AT_rich Low_complexity Low_complexity 1 28 0 8 1396 509 242 53 8 chr5 106426796 106426929 -46110330 - B1F SINE Alu -2 147 9 8 1396 1519 67 0 15 chr5 106427006 106427203 -46110056 + B2_Mm2 SINE B2 2 195 0 8 1396 675 84 0 0 chr5 106428391 106428486 -46108773 + (TG)n Simple_repeat Simple_repeat 2 96 0 9 1396 426 186 0 0 chr5 106428542 106428628 -46108631 + CT-rich Low_complexity Low_complexity 2 87 0 9 1396 441 54 0 0 chr5 106428847 106428903 -46108356 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1396 333 109 0 0 chr5 106428911 106428966 -46108293 + (GA)n Simple_repeat Simple_repeat 2 56 0 9 174 1394 245 66 0 chr5 106430423 106430770 -46106489 - MTEb LTR MaLR -5 374 5 9 1397 243 240 51 39 chr5 106431511 106431589 -46105670 + MER91C DNA Tip100 22 100 -40 9 1397 255 310 26 26 chr5 106432043 106432159 -46105100 - PB1D7 SINE Alu 0 120 5 9 1397 23 0 0 0 chr5 106432993 106433016 -46104243 + AT_rich Low_complexity Low_complexity 1 23 0 9 1397 22 0 0 0 chr5 106434047 106434069 -46103190 + AT_rich Low_complexity Low_complexity 1 22 0 9 1397 22 0 0 0 chr5 106434568 106434590 -46102669 + AT_rich Low_complexity Low_complexity 1 22 0 9 1397 1294 220 57 0 chr5 106435305 106435569 -46101690 + B4A SINE B4 4 282 -10 9 1397 400 325 25 8 chr5 106435706 106435827 -46101432 - B4A SINE B4 -169 123 1 9 1397 887 153 375 46 chr5 106436390 106436670 -46100589 + ORR1D1 LTR MaLR 3 374 0 9 1397 1108 243 157 6 chr5 106437434 106437790 -46099469 + MTD LTR MaLR 5 414 -5 9 1397 228 268 113 26 chr5 106437881 106437996 -46099263 + MLT1C LTR MaLR 138 262 -205 9 1397 996 173 70 15 chr5 106438411 106438611 -46098648 + B3 SINE B2 1 211 -5 9 1397 452 239 34 0 chr5 106438674 106438791 -46098468 + L1MB4 LINE L1 5576 5696 -487 9 1397 282 255 144 9 chr5 106439011 106439122 -46098137 + L1MB4 LINE L1 6055 6180 0 9 1397 845 269 37 12 chr5 106439186 106439427 -46097832 + B4A SINE B4 1 247 -45 9 1397 210 71 0 0 chr5 106439442 106439470 -46097789 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1397 305 156 0 13 chr5 106439534 106439612 -46097647 + (CAGA)n Simple_repeat Simple_repeat 2 78 0 9 1397 201 266 24 60 chr5 106439651 106439670 -46097589 + (CAGAGA)n Simple_repeat Simple_repeat 6 24 0 9 1397 189 0 0 0 chr5 106439670 106439691 -46097568 + (CAGC)n Simple_repeat Simple_repeat 3 23 0 9 1397 180 0 0 0 chr5 106439693 106439713 -46097546 + (CA)n Simple_repeat Simple_repeat 2 21 0 9 1397 201 266 24 60 chr5 106439713 106439774 -46097485 + (CAGAGA)n Simple_repeat Simple_repeat 1 62 0 9 1397 223 241 0 0 chr5 106439715 106439769 -46097490 + GA-rich Low_complexity Low_complexity 2 55 0 9 1397 1046 68 7 0 chr5 106439779 106439927 -46097332 + (GA)n Simple_repeat Simple_repeat 2 150 0 9 1397 216 0 0 0 chr5 106440002 106440026 -46097233 + (CA)n Simple_repeat Simple_repeat 2 25 0 9 1397 441 0 0 0 chr5 106440028 106440077 -46097182 + (GA)n Simple_repeat Simple_repeat 2 50 0 9 1397 327 313 71 26 chr5 106442277 106442431 -46094828 + RSINE1 SINE B4 5 165 0 9 1397 248 250 9 0 chr5 106442431 106442543 -46094716 + (CA)n Simple_repeat Simple_repeat 1 113 0 9 1397 333 203 0 0 chr5 106442543 106442607 -46094652 + HAL1-3A_ME LINE L1 1976 2039 -819 9 1397 459 317 0 32 chr5 106442637 106442823 -46094436 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1397 243 274 0 0 chr5 106442830 106442929 -46094330 + (CA)n Simple_repeat Simple_repeat 1 99 0 9 1397 530 313 77 72 chr5 106443030 106443433 -46093826 - RMER5 LTR ERV1 -4 530 126 9 1397 2273 153 28 2 chr5 106443783 106444176 -46093083 + Lx2 LINE L1 6595 6997 0 9 1397 475 261 8 25 chr5 106444349 106444471 -46092788 + RSINE1 SINE B4 2 121 -44 9 1397 239 79 26 0 chr5 106444505 106444543 -46092716 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 9 1397 344 252 0 45 chr5 106444706 106444818 -46092441 + G-rich Low_complexity Low_complexity 4 110 0 9 1397 362 244 75 20 chr5 106445242 106445392 -46091867 + MIRb SINE MIR 16 187 -81 9 1397 461 304 7 7 chr5 106445889 106446035 -46091224 + ID_B1 SINE B4 78 223 -1 9 1397 342 308 38 25 chr5 106446150 106446310 -46090949 - L1MA6 LINE L1 -5 6295 6134 9 1397 39051 38 5 3 chr5 106446301 106452606 -46084653 - L1Md_T LINE L1 0 6585 167 9 1397 642 246 144 36 chr5 106452611 106452944 -46084315 - L1MA6 LINE L1 -151 6149 5781 9 1397 288 307 171 16 chr5 106453139 106453268 -46083991 + B4A SINE B4 1 149 -143 9 1397 457 274 0 0 chr5 106453709 106453815 -46083444 + CT-rich Low_complexity Low_complexity 3 108 0 9 1397 703 66 19 56 chr5 106453818 106453979 -46083280 + (TTCTC)n Simple_repeat Simple_repeat 3 157 0 9 1397 322 239 0 14 chr5 106454651 106454723 -46082536 - ID SINE ID -153 71 1 9 1397 475 212 27 71 chr5 106454756 106454939 -46082320 + CT-rich Low_complexity Low_complexity 4 178 0 9 1397 482 179 14 107 chr5 106454953 106455748 -46081511 + CT-rich Low_complexity Low_complexity 1 721 0 9 1397 335 206 192 20 chr5 106457480 106457579 -46079680 - B4 SINE B4 -4 288 173 9 1397 591 53 0 0 chr5 106457601 106457676 -46079583 + (TCCC)n Simple_repeat Simple_repeat 4 78 0 9 1397 273 321 0 0 chr5 106457676 106457757 -46079502 + CT-rich Low_complexity Low_complexity 2 82 0 9 1397 267 211 167 62 chr5 106459263 106459425 -46077834 + L1MA6 LINE L1 6116 6294 -6 9 1397 291 121 0 0 chr5 106460333 106460391 -46076868 + (T)n Simple_repeat Simple_repeat 1 58 0 9 1397 1183 68 7 0 chr5 106461126 106461272 -46075987 - B1_Mus1 SINE Alu -1 147 1 9 1397 257 320 29 19 chr5 106461663 106461768 -46075491 - MIR3 SINE MIR -27 181 76 9 1397 382 254 77 44 chr5 106462072 106462253 -46075006 + MamSINE1 SINE tRNA 7 193 -97 9 1397 266 240 80 0 chr5 106462327 106462402 -46074857 - MLT1A LTR MaLR -287 87 7 9 1397 396 0 0 0 chr5 106463083 106463127 -46074132 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1397 3983 178 24 24 chr5 106463821 106464588 -46072671 - Lx2B LINE L1 -4 6996 6230 9 1397 207 0 0 0 chr5 106465238 106465261 -46071998 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 9 1397 387 0 0 0 chr5 106465706 106465749 -46071510 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1397 199 175 0 34 chr5 106465779 106465838 -46071421 + CT-rich Low_complexity Low_complexity 3 59 0 9 1397 946 207 19 28 chr5 106465873 106466087 -46071172 + B3 SINE B2 1 212 -4 9 1397 1220 54 0 0 chr5 106468041 106468188 -46069071 - B1_Mus2 SINE Alu 0 147 1 9 1397 981 131 0 0 chr5 106469447 106469464 -46067795 + (TCC)n Simple_repeat Simple_repeat 2 18 0 9 1397 1368 67 0 0 chr5 106469464 106469644 -46067615 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 9 1397 981 131 0 0 chr5 106469644 106469786 -46067473 + (TCC)n Simple_repeat Simple_repeat 1 142 0 9 1397 290 316 60 43 chr5 106471561 106471746 -46065513 - MLT1J2 LTR MaLR -23 425 238 9 1397 817 225 114 10 chr5 106472173 106472375 -46064884 - ID_B1 SINE B4 -1 223 1 9 1397 485 287 15 87 chr5 106472910 106473116 -46064143 + Helitron3Na_Mam RC Helitron 275 465 -21 9 1397 444 252 9 28 chr5 106473355 106473461 -46063798 + B4A SINE B4 1 104 -188 9 1397 585 261 49 43 chr5 106473530 106473714 -46063545 + B4A SINE B4 88 272 -20 9 1397 443 48 16 0 chr5 106473736 106473798 -46063461 + (CA)n Simple_repeat Simple_repeat 1 63 0 9 1397 533 231 4 0 chr5 106474764 106475027 -46062232 + (CA)n Simple_repeat Simple_repeat 1 264 0 9 1397 35 54 0 0 chr5 106475704 106475760 -46061499 + AT_rich Low_complexity Low_complexity 1 56 0 9 1397 540 205 18 9 chr5 106476365 106476478 -46060781 + B3 SINE B2 53 166 -50 9 1397 333 0 0 0 chr5 106476482 106476519 -46060740 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1397 911 208 64 10 chr5 106476696 106476900 -46060359 - B3 SINE B2 0 216 2 9 1397 696 235 299 63 chr5 106477630 106477921 -46059338 + ORR1E LTR MaLR 1 360 -19 9 1397 327 347 14 7 chr5 106478210 106478358 -46058901 - MIR SINE MIR -87 175 27 9 1397 510 17 0 0 chr5 106479249 106479308 -46057951 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 9 1397 686 167 33 114 chr5 106479575 106479785 -46057474 - B3A SINE B2 -5 193 1 9 1397 463 254 199 78 chr5 106480738 106480994 -46056265 - B4A SINE B4 0 292 6 9 1397 236 282 98 88 chr5 106481128 106481322 -46055937 - Tigger10 DNA Tigger -39 1804 1609 9 1397 987 257 50 58 chr5 106481478 106481858 -46055401 + MTE2b LTR MaLR 3 379 0 9 1397 716 282 74 70 chr5 106482225 106482639 -46054620 - MLT2C2 LTR ERVL -1 396 1 9 1397 435 137 0 0 chr5 106483502 106483575 -46053684 + (GGA)n Simple_repeat Simple_repeat 2 74 0 9 1397 23 0 0 0 chr5 106483924 106483947 -46053312 + AT_rich Low_complexity Low_complexity 1 23 0 9 1397 281 169 0 17 chr5 106485430 106485490 -46051769 + CT-rich Low_complexity Low_complexity 2 60 0 9 1397 204 182 0 0 chr5 106486138 106486182 -46051077 + G-rich Low_complexity Low_complexity 3 46 0 9 1397 357 43 0 0 chr5 106486182 106486229 -46051030 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 9 1397 591 15 0 0 chr5 106486229 106486297 -46050962 + (GGAA)n Simple_repeat Simple_repeat 2 69 0 9 1397 369 304 146 5 chr5 106487114 106487319 -46049940 - MIRb SINE MIR -8 260 27 9 1397 232 234 177 25 chr5 106487604 106487683 -46049576 + ID_B1 SINE B4 3 93 -131 9 1397 2378 72 15 58 chr5 106487683 106488025 -46049234 + ORR1A2 LTR MaLR 1 327 0 9 1397 194 360 0 13 chr5 106488310 106488386 -46048873 - L2b LINE L2 -18 3357 3283 9 1397 627 112 0 0 chr5 106488438 106488536 -46048723 + (GA)n Simple_repeat Simple_repeat 1 98 0 9 1397 306 50 0 0 chr5 106489421 106489461 -46047798 + (TA)n Simple_repeat Simple_repeat 1 40 0 9 1397 697 231 21 42 chr5 106489733 106489923 -46047336 + B4A SINE B4 107 292 0 9 1397 404 246 6 0 chr5 106489951 106490126 -46047133 + (CA)n Simple_repeat Simple_repeat 1 176 0 9 1397 191 222 0 57 chr5 106490111 106490216 -46047043 + (CATATA)n Simple_repeat Simple_repeat 6 104 0 9 1397 321 293 0 0 chr5 106490226 106490325 -46046934 + (CA)n Simple_repeat Simple_repeat 2 100 0 9 1397 196 207 25 49 chr5 106490331 106490453 -46046806 + (CATA)n Simple_repeat Simple_repeat 1 119 0 9 1397 218 259 0 11 chr5 106490495 106490585 -46046674 + (CA)n Simple_repeat Simple_repeat 2 90 0 1 1397 219 169 182 15 chr5 106490630 106490696 -46046563 + MIRb SINE MIR 26 102 -166 1 1397 195 139 0 0 chr5 106491234 106491270 -46045989 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1397 879 176 10 83 chr5 106492807 106493011 -46044248 + B2_Mm2 SINE B2 2 190 -5 1 1397 4450 171 24 63 chr5 106493216 106494148 -46043111 - RMER19B LTR ERVK -7 895 1 1 1397 215 114 0 22 chr5 106494818 106494863 -46042396 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1397 221 274 16 0 chr5 106494869 106494931 -46042328 + (TATG)n Simple_repeat Simple_repeat 3 65 0 1 1397 371 262 78 47 chr5 106494943 106495071 -46042188 - B4 SINE B4 -14 278 147 1 1397 783 284 22 5 chr5 106495184 106495407 -46041852 - B4A SINE B4 -62 230 4 1 1397 2041 95 70 26 chr5 106495651 106495964 -46041295 - ORR1A2 LTR MaLR 0 327 1 1 1397 402 21 0 0 chr5 106496908 106496955 -46040304 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1397 278 183 14 0 chr5 106497011 106497082 -46040177 + (TG)n Simple_repeat Simple_repeat 2 73 0 1 1397 326 299 102 8 chr5 106497202 106497320 -46039939 - B4A SINE B4 -148 144 16 1 1397 25 31 0 0 chr5 106497515 106497547 -46039712 + AT_rich Low_complexity Low_complexity 1 32 0 1 1397 504 217 0 0 chr5 106497547 106497690 -46039569 + (TG)n Simple_repeat Simple_repeat 1 143 0 1 1397 1330 145 29 12 chr5 106497718 106497958 -46039301 + Lx LINE L1 6350 6772 -286 1 1397 180 0 0 0 chr5 106499952 106499972 -46037287 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1397 2821 62 8 0 chr5 106500000 106500386 -46036873 + MTA_Mm LTR MaLR 8 396 0 1 1397 180 0 0 0 chr5 106501176 106501196 -46036063 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1397 1174 62 0 0 chr5 106501196 106501342 -46035917 - B1_Mm SINE Alu 0 147 2 3 1397 966 28 0 0 chr5 106501345 106501452 -46035807 - U6 snRNA snRNA 0 107 1 4 1397 402 21 0 0 chr5 106501724 106501771 -46035488 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1397 211 296 56 0 chr5 106501800 106501871 -46035388 - B3A SINE B2 -121 77 3 6 1397 280 320 82 38 chr5 106503341 106503500 -46033759 - L1MEc LINE L1 -1023 5296 5131 7 1397 537 166 34 7 chr5 106503601 106503747 -46033512 + (TA)n Simple_repeat Simple_repeat 1 150 0 8 1397 183 42 0 0 chr5 106503767 106503791 -46033468 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1397 313 256 97 54 chr5 106503955 106504034 -46033225 - L1MEc LINE L1 -1517 4802 4726 7 1397 564 257 202 27 chr5 106504034 106504366 -46032893 - MLT1B LTR MaLR 0 390 1 1 1397 313 256 97 54 chr5 106504366 106504472 -46032787 - L1MEc LINE L1 -1594 4725 4609 7 1397 853 276 155 9 chr5 106504700 106505233 -46032026 - L1MEc LINE L1 -2023 4296 3667 7 1397 748 267 19 15 chr5 106505370 106505575 -46031684 - B3 SINE B2 -2 214 9 1 1397 1402 96 0 0 chr5 106506282 106506470 -46030789 - B2_Mm2 SINE B2 -7 188 1 1 1397 271 231 42 85 chr5 106506474 106506592 -46030667 - L1MEc LINE L1 -4645 1770 1658 7 1397 307 318 78 24 chr5 106506666 106506872 -46030387 - L1MEc LINE L1 -4915 1485 1269 7 1397 293 68 23 0 chr5 106506873 106506917 -46030342 + (CCCCCT)n Simple_repeat Simple_repeat 2 46 0 1 1397 1099 41 6 93 chr5 106507091 106507252 -46030007 + B1_Mus2 SINE Alu 1 147 0 1 1397 190 214 24 0 chr5 106510262 106510304 -46026955 + MIR SINE MIR 5 47 -215 1 1397 299 267 155 19 chr5 106510920 106511023 -46026236 - PB1D10 SINE Alu 0 117 1 1 1397 2998 151 35 10 chr5 106511177 106511490 -46025769 + RLTR12B LTR ERVK 1 329 -199 1 1397 369 0 0 0 chr5 106511490 106511531 -46025728 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1397 2998 151 35 10 chr5 106511531 106511732 -46025527 + RLTR12B LTR ERVK 330 528 0 1 1397 261 280 132 29 chr5 106512376 106512512 -46024747 - L1M5 LINE L1 -341 5783 5634 1 1397 284 348 75 43 chr5 106512717 106512999 -46024260 + MLT1J LTR MaLR 71 361 -151 2 1397 189 0 0 0 chr5 106513159 106513180 -46024079 + (CCCTG)n Simple_repeat Simple_repeat 2 22 0 2 1397 2782 149 102 33 chr5 106513468 106514015 -46023244 + RMER4B LTR ERVK 1 585 0 2 1397 530 198 8 22 chr5 106514041 106514175 -46023084 - Lx7 LINE L1 -2 7694 7563 2 1397 243 61 0 0 chr5 106514214 106514247 -46023012 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1397 2307 184 30 9 chr5 106514248 106514676 -46022583 - Lx7 LINE L1 -279 7417 6981 2 1397 1516 159 110 3 chr5 106514674 106515009 -46022250 - L1_Mur3 LINE L1 -4030 1850 1480 2 1397 1032 240 3 21 chr5 106515025 106515310 -46021949 - L1_Mur3 LINE L1 -6606 1122 843 2 1397 320 329 56 24 chr5 106515503 106515804 -46021455 - L1_Mur3 LINE L1 -6898 830 509 2 1397 806 169 55 18 chr5 106515964 106515987 -46021272 - B2_Mm2 SINE B2 -26 169 146 2 1397 396 0 0 0 chr5 106515987 106516031 -46021228 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1397 806 169 55 18 chr5 106516031 106516170 -46021089 - B2_Mm2 SINE B2 -50 145 1 2 1397 2872 156 73 49 chr5 106516310 106516984 -46020275 - RMER6C LTR ERVK 0 690 1 2 1397 848 195 194 6 chr5 106517045 106517220 -46020039 - B3 SINE B2 -6 210 3 2 1397 23 0 0 0 chr5 106517506 106517529 -46019730 + AT_rich Low_complexity Low_complexity 1 23 0 3 1397 735 188 73 68 chr5 106517573 106517750 -46019509 + B3A SINE B2 3 180 -18 3 1397 527 62 0 12 chr5 106517751 106517832 -46019427 + (GA)n Simple_repeat Simple_repeat 1 80 0 3 1397 396 250 97 0 chr5 106518495 106518619 -46018640 - LTR33 LTR ERVL -7 508 373 3 1397 296 241 34 11 chr5 106519598 106519686 -46017573 - ID_B1 SINE B4 -1 223 134 3 1397 423 0 0 0 chr5 106520848 106520895 -46016364 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1397 267 31 0 0 chr5 106522385 106522417 -46014842 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1397 661 301 36 0 chr5 106522420 106522586 -46014673 - B3A SINE B2 -26 172 1 3 1397 345 82 0 0 chr5 106524179 106524228 -46013031 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1397 241 102 61 0 chr5 106524295 106524344 -46012915 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 3 1397 211 187 171 13 chr5 106524394 106524470 -46012789 - B4 SINE B4 -204 88 1 4 1397 189 0 0 0 chr5 106525335 106525356 -46011903 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1397 271 122 0 0 chr5 106525356 106525397 -46011862 - ORR1D1 LTR MaLR 0 374 334 4 1397 645 170 14 7 chr5 106525397 106525539 -46011720 + (TATG)n Simple_repeat Simple_repeat 2 144 0 4 1397 381 204 21 21 chr5 106525529 106525674 -46011585 + (CATATA)n Simple_repeat Simple_repeat 2 146 0 4 1397 758 181 7 34 chr5 106525676 106525825 -46011434 - ORR1D1 LTR MaLR -64 310 166 4 1397 751 208 5 38 chr5 106525861 106526046 -46011213 - ORR1D1 LTR MaLR -191 183 5 4 1397 201 242 32 16 chr5 106526104 106526167 -46011092 + (CATA)n Simple_repeat Simple_repeat 1 64 0 4 1397 206 290 17 38 chr5 106526420 106526508 -46010751 - MIRc SINE MIR -114 162 70 4 1397 235 206 162 0 chr5 106527464 106527532 -46009727 + L1M5 LINE L1 5414 5492 -702 4 1397 790 256 63 13 chr5 106527614 106527851 -46009408 + B4A SINE B4 1 249 -43 4 1397 590 39 13 0 chr5 106527890 106527967 -46009292 + (TC)n Simple_repeat Simple_repeat 1 78 0 4 1397 804 228 120 35 chr5 106528004 106528263 -46008996 - MTE2b LTR MaLR -97 282 2 5 1397 243 0 0 0 chr5 106529654 106529681 -46007578 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 5 1397 403 312 0 0 chr5 106529687 106529796 -46007463 - ID_B1 SINE B4 -14 210 102 5 1397 405 0 0 0 chr5 106529893 106529938 -46007321 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1397 465 320 0 0 chr5 106532469 106532594 -46004665 - Tigger12c DNA MER2_type -609 125 1 5 1397 4337 28 16 0 chr5 106532916 106533419 -46003840 - L1Md_F3 LINE L1 -14 6570 6060 5 1397 979 262 60 25 chr5 106536412 106536694 -46000565 + MTEa LTR MaLR 1 292 -87 5 1397 621 160 14 7 chr5 106536728 106536873 -46000386 + CT-rich Low_complexity Low_complexity 4 149 0 5 1397 320 194 0 15 chr5 106536873 106536941 -46000318 + MTEa LTR MaLR 313 379 0 5 1397 222 259 36 36 chr5 106537025 106537109 -46000150 - MIR SINE MIR -13 249 166 5 1397 21 71 0 0 chr5 106540012 106540054 -45997205 + AT_rich Low_complexity Low_complexity 1 42 0 5 1397 1158 176 76 0 chr5 106541416 106541626 -45995633 + URR1A DNA MER1_type 1 226 0 6 1397 325 317 55 7 chr5 106542450 106542596 -45994663 + MER45A DNA Tip100 2 154 -24 6 1397 195 42 0 0 chr5 106543362 106543386 -45993873 + (TGGGGG)n Simple_repeat Simple_repeat 3 26 0 6 1397 761 304 111 56 chr5 106543461 106543820 -45993439 + MTEa LTR MaLR 1 379 0 6 1397 527 246 17 0 chr5 106544213 106544331 -45992928 + PB1D7 SINE Alu 1 120 0 6 1397 539 256 14 106 chr5 106544771 106544989 -45992270 + RMER30 DNA MER1_type 5 202 0 6 1397 211 215 173 25 chr5 106545748 106545829 -45991430 + PB1D10 SINE Alu 25 117 0 6 1397 183 129 0 0 chr5 106546171 106546202 -45991057 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1397 254 265 43 14 chr5 106549341 106549410 -45987849 - B3 SINE B2 -10 206 136 6 1397 248 302 101 23 chr5 106549422 106549551 -45987708 - MER45B DNA Tip100 -828 212 74 6 1397 393 81 0 0 chr5 106549808 106549870 -45987389 + (T)n Simple_repeat Simple_repeat 1 62 0 7 1397 320 208 13 13 chr5 106550766 106550844 -45986415 - Lx7 LINE L1 -5 7691 7614 7 1397 2427 233 96 28 chr5 106550976 106551620 -45985639 - Lx7 LINE L1 -333 7363 6676 7 1397 811 231 15 53 chr5 106552016 106552222 -45985037 - B3A SINE B2 0 198 1 7 1397 356 308 45 58 chr5 106552255 106552410 -45984849 - RSINE1 SINE B4 0 165 13 7 1397 366 219 0 0 chr5 106554787 106554860 -45982399 - B4 SINE B4 -212 80 8 7 1397 527 255 100 56 chr5 106554866 106555136 -45982123 - L1ME3 LINE L1 -30 6132 5851 7 1397 8436 34 12 1 chr5 106555208 106556574 -45980685 - L1Md_F2 LINE L1 -1 6581 5201 7 1397 345 276 0 0 chr5 106557889 106557965 -45979294 + ID4_ SINE ID 4 79 -4 7 1397 213 39 0 0 chr5 106558190 106558216 -45979043 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1397 601 246 0 35 chr5 106558216 106558349 -45978910 - B1_Mus2 SINE Alu -11 136 5 7 1397 222 341 0 68 chr5 106558380 106558468 -45978791 - MIRb SINE MIR -135 133 52 8 1397 329 292 103 35 chr5 106558722 106558896 -45978363 + MIR SINE MIR 49 234 -28 8 1397 955 160 191 11 chr5 106559561 106559744 -45977515 - B3 SINE B2 0 216 1 8 1397 907 316 79 60 chr5 106560181 106560947 -45976312 - L1ME1 LINE L1 -29 6305 5370 8 1397 264 186 0 0 chr5 106561111 106561154 -45976105 - L1MEc LINE L1 -5121 1279 1237 8 1397 332 227 101 39 chr5 106561169 106561348 -45975911 - L1MEc LINE L1 -5217 1183 994 8 1397 294 29 0 0 chr5 106561371 106561406 -45975853 + (TCCCC)n Simple_repeat Simple_repeat 1 35 0 8 174 315 340 82 20 chr5 106561406 106561553 -45975706 - HAL1-3A_ME LINE L1 -419 2439 2284 8 1398 277 265 0 29 chr5 106561553 106561623 -45975636 + C-rich Low_complexity Low_complexity 3 70 0 8 1398 300 245 67 109 chr5 106562693 106562858 -45974401 + HAL1-3A_ME LINE L1 2281 2438 -420 8 1398 365 316 79 18 chr5 106562974 106563241 -45974018 - L1ME1 LINE L1 -1535 4611 4314 8 1398 314 324 108 0 chr5 106563204 106563343 -45973916 + L1M5 LINE L1 4903 5056 -1090 8 1398 311 276 98 84 chr5 106563571 106563791 -45973468 - MLT1B LTR MaLR -4 501 167 9 1398 335 276 33 23 chr5 106563926 106564097 -45973162 - L1MEe LINE L1 -1473 4673 4501 9 1398 484 81 0 0 chr5 106564277 106564339 -45972920 + (TTCC)n Simple_repeat Simple_repeat 2 63 0 9 1398 869 153 6 0 chr5 106564339 106564496 -45972763 + CT-rich Low_complexity Low_complexity 2 159 0 9 1398 278 242 32 0 chr5 106564576 106564700 -45972559 + CT-rich Low_complexity Low_complexity 2 129 0 9 1398 599 343 103 56 chr5 106564734 106565345 -45971914 - L1MEe LINE L1 -3715 2451 1812 9 1398 215 265 0 0 chr5 106565580 106565629 -45971630 + CT-rich Low_complexity Low_complexity 3 51 0 9 1398 802 235 71 69 chr5 106565640 106565951 -45971308 - B4A SINE B4 -22 270 1 9 1398 2016 144 12 95 chr5 106566085 106566478 -45970781 + ORR1B1 LTR MaLR 31 386 -8 9 1398 507 152 0 0 chr5 106566676 106566788 -45970471 + CT-rich Low_complexity Low_complexity 2 113 0 9 1398 362 21 21 0 chr5 106566788 106566835 -45970424 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1398 186 320 164 33 chr5 106567329 106567481 -45969778 - MIRb SINE MIR -31 237 66 1 1398 516 228 147 18 chr5 106567673 106567800 -45969459 + B3A SINE B2 5 152 -46 1 1398 369 0 0 0 chr5 106567800 106567841 -45969418 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1398 351 0 0 0 chr5 106567841 106567879 -45969380 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1398 516 228 147 18 chr5 106567879 106567920 -45969339 + B3A SINE B2 153 194 -4 1 1398 566 194 263 6 chr5 106567939 106568110 -45969149 - B3 SINE B2 -1 215 1 1 1398 756 245 94 35 chr5 106568252 106568455 -45968804 - RCHARR1 DNA MER1_type -759 215 1 1 1398 3497 20 10 0 chr5 106569910 106570302 -45966957 + MTA_Mm LTR MaLR 1 396 0 1 1398 9395 30 2 5 chr5 106570302 106571403 -45965856 + MTA_Mm-int LTR MaLR 1 1098 0 1 1398 3497 20 10 0 chr5 106571403 106571795 -45965464 + MTA_Mm LTR MaLR 1 396 0 1 1398 290 281 21 0 chr5 106571808 106571904 -45965355 + (TATG)n Simple_repeat Simple_repeat 2 99 0 1 1398 308 161 0 16 chr5 106572587 106572650 -45964609 + CT-rich Low_complexity Low_complexity 2 63 0 1 1398 878 239 111 6 chr5 106572759 106572922 -45964337 - L1MDa LINE L1 -685 5885 5709 1 1398 465 66 0 0 chr5 106572922 106572983 -45964276 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1398 878 279 103 52 chr5 106572983 106573028 -45964231 - L1MDa LINE L1 -829 5708 5646 1 1398 1158 256 50 28 chr5 106573028 106573386 -45963873 + ORR1D2 LTR MaLR 5 370 0 1 1398 878 279 103 52 chr5 106573386 106573780 -45963479 - L1MDa LINE L1 -892 5645 5256 1 1398 184 179 0 43 chr5 106573792 106573862 -45963397 + (TGAG)n Simple_repeat Simple_repeat 4 70 0 1 1398 713 138 7 0 chr5 106573927 106574072 -45963187 + (TG)n Simple_repeat Simple_repeat 2 147 0 1 1398 340 227 0 43 chr5 106574076 106574145 -45963114 - ID4_ SINE ID -11 72 7 1 1398 319 245 98 24 chr5 106574200 106574455 -45962804 - L1MDa LINE L1 -3129 3408 3135 1 1398 404 276 71 64 chr5 106574425 106574507 -45962752 - L1MDa LINE L1 -4219 2414 2331 1 1398 1625 189 62 52 chr5 106574507 106574875 -45962384 - ORR1D1 LTR MaLR -2 372 1 1 1398 404 276 71 64 chr5 106574875 106575074 -45962185 - L1MDa LINE L1 -4303 2330 2131 1 1398 306 282 0 2 chr5 106575116 106575190 -45962069 - B4A SINE B4 -214 78 6 1 1398 330 323 49 27 chr5 106575256 106575479 -45961780 - L1MDa LINE L1 -5426 1207 980 1 1398 711 0 0 0 chr5 106575742 106575821 -45961438 + (TTC)n Simple_repeat Simple_repeat 1 79 0 1 1398 1255 41 0 0 chr5 106575822 106575969 -45961290 - B1_Mm SINE Alu 0 147 1 1 1398 182 118 29 0 chr5 106577573 106577607 -45959652 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 1 1398 244 362 108 25 chr5 106578626 106578830 -45958429 - L3 LINE CR1 -734 3755 3535 1 1398 832 158 101 0 chr5 106579146 106579304 -45957955 - URR1A DNA MER1_type -1 225 52 1 1398 193 146 42 0 chr5 106579848 106579896 -45957363 + CT-rich Low_complexity Low_complexity 3 52 0 1 1398 4472 12 0 12 chr5 106580584 106581083 -45956176 + MT2_Mm LTR ERVL 1 493 0 1 1398 1000 43 0 55 chr5 106582029 106582175 -45955084 + L1Md_F2 LINE L1 6434 6571 -11 1 1398 5703 29 0 1 chr5 106582274 106582927 -45954332 - L1Md_T LINE L1 -11 6571 5920 1 1398 4790 206 58 60 chr5 106583249 106584410 -45952849 + Lx7 LINE L1 6539 7696 0 1 1398 869 47 0 0 chr5 106584520 106584627 -45952632 + B2_Mm2 SINE B2 1 107 -88 1 1398 1111 68 0 81 chr5 106584788 106584949 -45952310 + B1_Mus1 SINE Alu 1 148 0 1 1398 618 306 85 118 chr5 106585317 106585588 -45951671 - B4A SINE B4 0 292 31 1 1398 242 323 30 15 chr5 106585955 106585984 -45951275 + MT2B LTR ERVL 229 258 -343 1 1398 312 224 0 33 chr5 106585984 106586044 -45951215 + PB1D9 SINE Alu 2 59 -61 1 1398 1082 154 0 28 chr5 106586044 106586406 -45950853 + (CAGAGA)n Simple_repeat Simple_repeat 1 351 0 1 1398 479 309 0 0 chr5 106586395 106586573 -45950686 + GA-rich Low_complexity Low_complexity 2 179 0 1 1398 1098 155 0 19 chr5 106586492 106586814 -45950445 + (CAGAGA)n Simple_repeat Simple_repeat 1 316 0 1 1398 499 215 9 53 chr5 106586814 106586898 -45950361 + B1_Mur3 SINE Alu 42 122 -27 1 1398 282 29 0 0 chr5 106586898 106586933 -45950326 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1398 1100 43 0 48 chr5 106586933 106587078 -45950181 - B1_Mus2 SINE Alu -8 139 2 1 1398 499 215 9 53 chr5 106587078 106587105 -45950154 + B1_Mur3 SINE Alu 123 148 -1 1 1398 365 143 29 0 chr5 106587352 106587422 -45949837 + (TATATG)n Simple_repeat Simple_repeat 1 72 0 1 1398 672 270 88 19 chr5 106587512 106587727 -45949532 - Lx8 LINE L1 -341 7132 6903 1 1398 228 240 160 0 chr5 106588341 106588416 -45948843 - L2a LINE L2 -3 3423 3337 1 1398 1155 162 43 19 chr5 106588883 106589091 -45948168 - ORR1C1 LTR MaLR 0 378 166 1 1398 255 254 15 15 chr5 106589100 106589168 -45948091 + GA-rich Low_complexity Low_complexity 2 69 0 1 1398 1099 155 0 36 chr5 106589168 106589362 -45947897 - ORR1C1 LTR MaLR -191 187 1 1 1398 206 370 45 7 chr5 106589406 106589561 -45947698 - L2 LINE L2 -792 2627 2467 1 1398 338 318 18 9 chr5 106589738 106589849 -45947410 + ID_B1 SINE B4 111 222 -2 1 1398 327 252 33 83 chr5 106589897 106590018 -45947241 + PB1D10 SINE Alu 1 115 -2 1 1398 585 186 0 0 chr5 106590081 106590205 -45947054 + (TG)n Simple_repeat Simple_repeat 2 125 0 1 1398 597 272 0 20 chr5 106590234 106590384 -45946875 + B1F2 SINE Alu 1 147 -2 1 1398 581 275 105 29 chr5 106590672 106590882 -45946377 + MLT1F1 LTR MaLR 171 396 -173 1 1398 215 79 0 26 chr5 106591332 106591371 -45945888 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1 1398 21 0 0 0 chr5 106592792 106592813 -45944446 + AT_rich Low_complexity Low_complexity 1 21 0 1 1398 243 0 0 0 chr5 106594199 106594226 -45943033 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1398 555 16 0 0 chr5 106594226 106594289 -45942970 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1398 492 293 71 71 chr5 106595353 106595647 -45941612 - MLT1A LTR MaLR -30 344 51 1 1398 1415 172 69 41 chr5 106595852 106596245 -45941014 - RMER17C LTR ERVK 0 410 7 1 1398 267 103 0 0 chr5 106597525 106597564 -45939695 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1 1398 384 77 0 0 chr5 106597926 106597978 -45939281 + (TTC)n Simple_repeat Simple_repeat 1 52 0 1 1398 729 178 35 92 chr5 106598035 106598524 -45938735 - RMER17C LTR ERVK -84 326 1 1 1398 984 96 15 0 chr5 106599057 106599192 -45938067 + B1_Mus1 SINE Alu 1 137 -11 1 1398 533 42 0 14 chr5 106599213 106599286 -45937973 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 1 1398 1143 69 7 0 chr5 106599412 106599557 -45937702 - B1_Mm SINE Alu -1 146 1 1 1398 971 58 0 158 chr5 106600249 106600414 -45936845 - B1_Mm SINE Alu -8 139 1 1 1398 251 220 122 65 chr5 106600636 106600743 -45936516 - L2c LINE L2 -4 3383 3271 1 1398 295 288 0 12 chr5 106601204 106601285 -45935974 + GA-rich Low_complexity Low_complexity 2 81 0 1 1398 27 0 0 0 chr5 106602734 106602761 -45934498 + AT_rich Low_complexity Low_complexity 1 27 0 1 1398 207 215 0 0 chr5 106602789 106602854 -45934405 + CT-rich Low_complexity Low_complexity 2 66 0 1 1398 462 75 0 0 chr5 106602857 106602924 -45934335 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 1 1398 597 249 29 53 chr5 106602926 106603172 -45934087 - L1M2 LINE L1 -504 5793 5554 1 1398 264 254 368 0 chr5 106603320 106603434 -45933825 + B3A SINE B2 1 156 -42 1 1398 483 18 0 0 chr5 106603451 106603507 -45933752 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1398 678 163 0 0 chr5 106603837 106603978 -45933281 + (TG)n Simple_repeat Simple_repeat 1 141 0 1 1398 279 150 0 0 chr5 106603997 106604057 -45933202 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1398 362 24 0 0 chr5 106604135 106604177 -45933082 - Lx2 LINE L1 -1242 5755 5714 1 1398 6425 44 9 5 chr5 106604177 106604952 -45932307 + L1Md_F2 LINE L1 5805 6582 0 1 1398 735 12 0 0 chr5 106605794 106605878 -45931381 + (CCCTAA)n Simple_repeat Simple_repeat 2 85 0 1 1398 204 216 335 20 chr5 106605914 106606033 -45931226 - MIRb SINE MIR -70 198 35 1 1398 183 260 206 0 chr5 106606532 106606605 -45930654 + MIRb SINE MIR 62 149 -119 1 1398 387 0 0 0 chr5 106606624 106606667 -45930592 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1398 398 288 57 33 chr5 106608224 106608346 -45928913 + B1F SINE Alu 18 142 -7 1 1398 422 309 78 64 chr5 106608700 106608918 -45928341 + MTE2b LTR MaLR 1 221 -158 1 1398 225 59 38 38 chr5 106609826 106609879 -45927380 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 1 1398 21 0 0 0 chr5 106609993 106610014 -45927245 + AT_rich Low_complexity Low_complexity 1 21 0 1 1398 290 77 0 55 chr5 106612080 106612135 -45925124 + (CAAAA)n Simple_repeat Simple_repeat 3 54 0 1 1398 837 286 64 4 chr5 106612181 106612448 -45924811 + MTE2a LTR MaLR 96 378 -1 1 1398 276 246 86 17 chr5 106612509 106612625 -45924634 + L1MEc LINE L1 1266 1389 -5011 1 1398 529 40 26 0 chr5 106613062 106613138 -45924121 + (TTA)n Simple_repeat Simple_repeat 3 80 0 1 1398 512 211 174 0 chr5 106613138 106613247 -45924012 - B1_Mur1 SINE Alu -13 136 9 1 1398 260 279 51 0 chr5 106613257 106613336 -45923923 + MLT1A1 LTR MaLR 9 91 -317 1 1398 585 286 54 81 chr5 106613503 106613786 -45923473 + L1MEc LINE L1 1972 2259 -4141 1 1398 2831 124 164 37 chr5 106613786 106614328 -45922931 + RMER19C LTR ERVK 1 611 0 1 1398 585 286 54 81 chr5 106614328 106614562 -45922697 + L1MEc LINE L1 2260 2475 -3925 1 1398 2134 115 41 3 chr5 106614589 106614904 -45922355 + ORR1A2 LTR MaLR 1 327 0 1 1398 357 162 0 0 chr5 106616237 106616305 -45920954 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1398 784 183 116 6 chr5 106616434 106616615 -45920644 + ID_B1 SINE B4 2 202 -22 1 1398 538 256 36 66 chr5 106616873 106617040 -45920219 - B3A SINE B2 -36 162 1 1 1398 248 281 154 20 chr5 106617531 106617680 -45919579 - MIRc SINE MIR -51 217 49 1 1398 598 257 126 37 chr5 106618109 106618355 -45918904 - B4A SINE B4 0 292 25 1 1398 261 0 0 0 chr5 106618544 106618573 -45918686 + (TCTG)n Simple_repeat Simple_repeat 1 29 0 1 1398 294 327 18 0 chr5 106618719 106618829 -45918430 - MLT1D LTR MaLR 0 505 394 1 1398 1134 266 105 14 chr5 106618853 106619215 -45918044 + MTD LTR MaLR 25 419 0 1 1398 789 164 11 11 chr5 106619256 106619435 -45917824 + (TATG)n Simple_repeat Simple_repeat 1 179 0 1 1398 689 158 24 12 chr5 106619455 106619622 -45917637 + (TATATG)n Simple_repeat Simple_repeat 4 172 0 1 1398 300 302 30 38 chr5 106619694 106619825 -45917434 + MLT1D LTR MaLR 376 505 0 1 1398 180 0 0 0 chr5 106621364 106621384 -45915875 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1398 183 42 0 0 chr5 106621639 106621663 -45915596 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1398 460 337 36 10 chr5 106621940 106622135 -45915124 + MIRb SINE MIR 35 234 -34 2 1398 259 386 8 0 chr5 106623109 106623241 -45914018 + MIR SINE MIR 28 160 -102 2 1398 5822 199 107 12 chr5 106623271 106624506 -45912753 - Lx9 LINE L1 -8 7636 6300 2 1398 287 25 25 0 chr5 106624506 106624546 -45912713 + (TTATA)n Simple_repeat Simple_repeat 5 45 0 2 1398 5822 199 107 12 chr5 106624546 106624679 -45912580 - Lx9 LINE L1 -1345 6299 6138 2 1398 237 215 0 15 chr5 106624683 106624749 -45912510 - Lx9 LINE L1 -1634 6010 5946 2 1398 301 312 108 7 chr5 106625245 106625384 -45911875 - MIR SINE MIR -24 238 86 2 1398 838 248 176 39 chr5 106625698 106626006 -45911253 + ORR1E LTR MaLR 1 375 -4 2 1398 5019 42 0 0 chr5 106626153 106626743 -45910516 - L1_Mus3 LINE L1 -461 6177 5588 2 1398 3640 70 4 4 chr5 106626743 106627205 -45910054 + L1_Mus3 LINE L1 6170 6631 -7 2 1398 671 250 0 0 chr5 106627565 106627701 -45909558 + ID_B1 SINE B4 81 216 -8 2 1398 390 230 66 0 chr5 106628581 106628733 -45908526 + (CACAG)n Simple_repeat Simple_repeat 4 165 0 2 1398 180 0 0 0 chr5 106629562 106629582 -45907677 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2 1398 222 302 21 10 chr5 106632263 106632360 -45904899 - L2a LINE L2 0 3426 3329 2 1398 464 344 0 6 chr5 106635865 106636026 -45901233 + (TATG)n Simple_repeat Simple_repeat 4 163 0 2 1398 513 328 0 27 chr5 106635983 106636234 -45901025 + (TG)n Simple_repeat Simple_repeat 1 244 0 2 1398 314 239 115 0 chr5 106636525 106636638 -45900621 - L1MA4A LINE L1 -364 5939 5814 2 1398 242 314 77 66 chr5 106636655 106636836 -45900423 + L2 LINE L2 2804 2986 -433 2 1398 375 23 0 0 chr5 106636838 106636882 -45900377 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1398 222 116 0 0 chr5 106637448 106637491 -45899768 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2 1398 192 77 0 0 chr5 106637621 106637647 -45899612 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1398 405 141 0 0 chr5 106638035 106638106 -45899153 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1398 26 0 0 0 chr5 106638163 106638189 -45899070 + AT_rich Low_complexity Low_complexity 1 26 0 2 1398 246 178 0 0 chr5 106638227 106638272 -45898987 + PB1D10 SINE Alu 65 109 -8 2 1398 630 207 0 0 chr5 106638279 106638390 -45898869 + PB1D10 SINE Alu 3 113 -4 2 1398 641 304 86 15 chr5 106638845 106639112 -45898147 + B4A SINE B4 7 292 0 2 1398 225 196 0 0 chr5 106639131 106639177 -45898082 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1398 213 266 11 107 chr5 106640401 106640578 -45896681 + (CATATA)n Simple_repeat Simple_repeat 3 162 0 2 1398 701 291 83 23 chr5 106640610 106640961 -45896298 + L1MA4 LINE L1 5560 5931 -369 2 1398 271 302 119 0 chr5 106641143 106641269 -45895990 + MIR3 SINE MIR 36 176 -32 2 1398 426 53 0 0 chr5 106641946 106642003 -45895256 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1398 226 197 62 47 chr5 106642011 106642075 -45895184 + Lx3_Mus LINE L1 5593 5657 -1352 2 1398 849 139 0 53 chr5 106642117 106642269 -45894990 + B1_Mus2 SINE Alu 2 145 -2 2 1398 212 174 22 0 chr5 106642270 106642316 -45894943 + (CCAA)n Simple_repeat Simple_repeat 1 47 0 2 1398 280 194 0 101 chr5 106642348 106642417 -45894842 + tRNA-Ala-GCY_ tRNA tRNA 9 70 -5 2 1398 538 229 152 6 chr5 106642971 106643142 -45894117 + B4 SINE B4 94 289 -3 2 1398 228 163 0 0 chr5 106643173 106643216 -45894043 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1398 351 113 0 0 chr5 106643363 106643425 -45893834 + (CCA)n Simple_repeat Simple_repeat 1 62 0 2 1398 236 296 9 44 chr5 106643695 106643808 -45893451 - HAL1b LINE L1 -13 1996 1888 2 1398 293 243 100 0 chr5 106644184 106644254 -45893005 - L1MC LINE L1 -2074 5808 5732 2 1398 772 29 0 19 chr5 106644921 106645026 -45892233 + B1_Mus2 SINE Alu 45 147 0 2 1398 198 0 0 0 chr5 106645026 106645048 -45892211 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1398 23 54 0 0 chr5 106645090 106645127 -45892132 + GC_rich Low_complexity Low_complexity 1 37 0 2 1398 236 246 0 17 chr5 106646781 106646839 -45890420 + MLT2B1 LTR ERVL 412 468 -99 2 1398 558 273 15 0 chr5 106647722 106647854 -45889405 + RSINE1 SINE B4 3 136 -29 2 1398 507 321 140 39 chr5 106649290 106649977 -45887282 + Zaphod DNA Tip100 198 953 -3078 2 1398 24 0 0 0 chr5 106650019 106650043 -45887216 + AT_rich Low_complexity Low_complexity 1 24 0 2 1398 259 308 161 31 chr5 106650654 106650815 -45886444 + MIR SINE MIR 38 219 -43 2 1398 884 144 12 0 chr5 106651035 106651202 -45886057 + (CATA)n Simple_repeat Simple_repeat 2 170 0 2 1398 324 164 0 0 chr5 106651223 106651290 -45885969 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 1398 180 175 50 0 chr5 106651567 106651607 -45885652 + L2b LINE L2 3333 3374 -1 2 1398 307 309 6 6 chr5 106651935 106652114 -45885145 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1398 207 0 0 0 chr5 106653002 106653025 -45884234 + (G)n Simple_repeat Simple_repeat 1 23 0 2 1398 4258 69 56 0 chr5 106653996 106654549 -45882710 + MT2B2 LTR ERVL 1 584 0 2 1398 597 278 167 20 chr5 106654597 106654970 -45882289 - L1MC1 LINE L1 -155 6178 5753 2 1398 571 304 68 32 chr5 106655063 106655314 -45881945 - L1MC1 LINE L1 -803 5530 5271 2 1398 234 174 0 0 chr5 106655404 106655450 -45881809 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1398 358 346 0 8 chr5 106655465 106655596 -45881663 + (TATG)n Simple_repeat Simple_repeat 3 132 0 2 1398 643 278 70 1 chr5 106655606 106655838 -45881421 - B4A SINE B4 -12 280 10 2 1398 495 383 54 13 chr5 106656664 106657050 -45880209 + L3b LINE CR1 81 482 0 2 1398 236 264 27 14 chr5 106658294 106658367 -45878892 - MamGypLTR2b LTR Gypsy -351 571 498 2 1398 834 155 0 0 chr5 106659100 106659242 -45878017 - B1_Mus2 SINE Alu 0 147 6 2 1398 393 175 38 85 chr5 106659147 106659253 -45878006 - MT2B LTR ERVL -346 255 155 2 1398 261 159 42 28 chr5 106659695 106659766 -45877493 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 1398 487 309 108 0 chr5 106660513 106660707 -45876552 - MIR SINE MIR -30 232 18 2 1398 250 301 106 16 chr5 106660991 106661180 -45876079 + L1M5 LINE L1 5254 5459 -665 2 1398 207 0 0 0 chr5 106661419 106661442 -45875817 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1398 360 0 0 0 chr5 106661667 106661707 -45875552 + (CATAC)n Simple_repeat Simple_repeat 2 41 0 2 1398 366 23 0 0 chr5 106661713 106661756 -45875503 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1398 760 308 36 7 chr5 106661959 106662237 -45875022 - B4 SINE B4 -4 288 3 2 1398 411 271 0 0 chr5 106662426 106662522 -45874737 - L1MA6 LINE L1 -116 6184 6089 2 1398 740 275 124 0 chr5 106662593 106662811 -45874448 + MTE2b LTR MaLR 1 245 -134 2 1398 231 250 238 0 chr5 106662880 106662960 -45874299 + MTE2b LTR MaLR 215 313 -66 2 1398 788 262 160 8 chr5 106663052 106663100 -45874159 - B4A SINE B4 -4 288 215 2 1398 516 16 0 0 chr5 106663100 106663161 -45874098 + (TTTTG)n Simple_repeat Simple_repeat 2 62 0 2 1398 788 262 160 8 chr5 106663161 106663362 -45873897 - B4A SINE B4 -78 214 1 2 1398 267 31 0 0 chr5 106663400 106663432 -45873827 + (A)n Simple_repeat Simple_repeat 1 32 0 2 1398 250 244 36 12 chr5 106663432 106663515 -45873744 - MIRb SINE MIR -132 136 52 2 1398 315 0 0 0 chr5 106665447 106665482 -45871777 + (TATG)n Simple_repeat Simple_repeat 3 37 0 2 1398 302 272 12 12 chr5 106665605 106665687 -45871572 + ID4_ SINE ID 2 83 0 2 1398 246 287 81 50 chr5 106665919 106666117 -45871142 - L1MA10 LINE L1 -14 6320 6117 2 1398 194 139 0 44 chr5 106666234 106666279 -45870980 + (CAGA)n Simple_repeat Simple_repeat 1 43 0 2 1398 723 272 140 26 chr5 106666308 106666572 -45870687 - MTE2b LTR MaLR -85 294 1 2 1398 320 248 242 24 chr5 106666912 106667077 -45870182 + B4 SINE B4 92 292 0 2 1398 444 37 0 0 chr5 106668142 106668196 -45869063 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1398 1960 213 181 36 chr5 106669917 106670554 -45866705 - Lx9 LINE L1 -178 7466 6738 2 1398 793 37 0 0 chr5 106670908 106671016 -45866243 + L1Md_T LINE L1 6475 6582 0 2 1398 943 268 61 0 chr5 106671025 106671286 -45865973 + ORR1D2 LTR MaLR 17 293 -77 2 1398 273 285 84 65 chr5 106671780 106671994 -45865265 + L1MC4 LINE L1 7167 7384 -658 2 1398 316 329 20 7 chr5 106672527 106672680 -45864579 - L1MD2 LINE L1 -6367 180 26 2 1398 278 339 23 16 chr5 106672992 106673121 -45864138 - L1M5 LINE L1 -3660 2486 2357 2 1398 212 0 36 0 chr5 106673398 106673426 -45863833 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1398 592 209 17 11 chr5 106673575 106673754 -45863505 + CT-rich Low_complexity Low_complexity 1 180 0 2 1398 5448 182 77 35 chr5 106675009 106676216 -45861043 - Lx9 LINE L1 -1 7643 6386 2 1398 1538 138 124 0 chr5 106676218 106676509 -45860750 - IAPEY3_LTR LTR ERVK -5 327 1 2 1398 1046 236 108 41 chr5 106676614 106677209 -45860050 - Lx9 LINE L1 -1398 6246 5563 2 1398 312 27 0 0 chr5 106677214 106677251 -45860008 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2 1398 1049 90 6 6 chr5 106677252 106677409 -45859850 - B2_Mm2 SINE B2 -37 158 2 2 1398 4800 199 90 34 chr5 106677411 106678699 -45858560 - Lx9 LINE L1 -287 5560 4201 2 1398 990 255 35 66 chr5 106678763 106679049 -45858210 + B4 SINE B4 16 292 0 2 1398 216 395 0 0 chr5 106679073 106679154 -45858105 + (TATATG)n Simple_repeat Simple_repeat 5 85 0 2 1398 319 321 157 28 chr5 106681188 106681652 -45855607 + L1MEc LINE L1 1926 2449 -3951 2 1398 2430 42 0 0 chr5 106681652 106681937 -45855322 - L1Md_F2 LINE L1 -293 6289 6005 2 1398 2586 50 0 3 chr5 106681938 106682259 -45855000 + L1Md_F2 LINE L1 6258 6577 -5 2 1398 325 346 120 48 chr5 106682563 106682922 -45854337 + L1MEc LINE L1 2550 2922 -3397 2 1398 442 319 51 33 chr5 106682922 106683136 -45854123 - ID_B1 SINE B4 -2 222 5 2 1398 325 346 120 48 chr5 106683136 106683468 -45853791 + L1MEc LINE L1 2923 3291 -3028 2 1398 939 312 151 35 chr5 106683529 106683764 -45853495 + Lx8 LINE L1 6815 7120 -353 2 1398 3511 137 50 0 chr5 106683764 106684220 -45853039 + Lx2 LINE L1 6401 6869 -128 2 1398 195 42 0 0 chr5 106684220 106684244 -45853015 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 3 1398 3511 137 50 0 chr5 106684244 106684349 -45852910 + Lx2 LINE L1 6870 6989 -8 2 1398 939 312 151 35 chr5 106684349 106684704 -45852555 + Lx8 LINE L1 7121 7473 0 2 1398 358 204 66 29 chr5 106684783 106684919 -45852340 + L1MC LINE L1 3118 3258 -2888 3 1398 29 28 0 0 chr5 106685116 106685152 -45852107 + AT_rich Low_complexity Low_complexity 1 36 0 3 1398 260 212 50 3 chr5 106685287 106685392 -45851867 + L1MC LINE L1 4509 4620 -1526 3 1398 279 359 82 6 chr5 106685615 106685786 -45851473 + L1MC LINE L1 4853 5036 -1110 3 1398 542 289 145 15 chr5 106685793 106685993 -45851266 + Lx8 LINE L1 6942 7167 -306 3 1398 501 158 13 46 chr5 106686018 106686323 -45850936 + (TCTCTG)n Simple_repeat Simple_repeat 1 294 0 3 1398 288 0 0 0 chr5 106686326 106686358 -45850901 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1398 1596 242 96 28 chr5 106686361 106686699 -45850560 - Lx7 LINE L1 -347 7349 6979 3 1398 2720 138 82 30 chr5 106686699 106687201 -45850058 - RLTR11A LTR ERVK 0 528 1 3 1398 1596 242 96 28 chr5 106687201 106687360 -45849899 - Lx7 LINE L1 -718 6978 6818 3 1398 3550 25 0 0 chr5 106687799 106688195 -45849064 + MTA_Mm LTR MaLR 1 396 0 3 1398 473 229 0 30 chr5 106688322 106688421 -45848838 + B1_Mur1 SINE Alu 47 142 -7 3 1398 466 195 142 17 chr5 106688918 106689038 -45848221 - RSINE1 SINE B4 -30 135 1 3 1398 208 0 0 59 chr5 106689479 106689513 -45847746 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1398 333 0 0 0 chr5 106690257 106690294 -45846965 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1398 579 329 25 28 chr5 106690973 106691219 -45846040 + B4A SINE B4 15 272 -20 3 1398 378 61 0 0 chr5 106691266 106691315 -45845944 + (CCA)n Simple_repeat Simple_repeat 2 50 0 3 1398 1228 304 128 40 chr5 106691366 106692222 -45845037 - L1MA9 LINE L1 -47 6265 5334 3 1398 459 293 34 84 chr5 106692220 106692416 -45844843 + L1M3 LINE L1 4950 5128 -1012 3 174 2483 158 7 9 chr5 106692416 106692838 -45844421 - MTC LTR MaLR 0 421 1 3 1399 459 293 34 84 chr5 106692838 106692939 -45844320 + L1M3 LINE L1 5129 5231 -909 3 1399 218 272 33 120 chr5 106694938 106695122 -45842137 - MIRb SINE MIR 0 268 101 3 1399 198 71 0 0 chr5 106695226 106695254 -45842005 + (TTAAA)n Simple_repeat Simple_repeat 4 31 0 3 1399 280 335 74 96 chr5 106695778 106696102 -45841157 + L2b LINE L2 3049 3365 -10 3 1399 193 289 91 13 chr5 106696806 106696883 -45840376 - MIR SINE MIR -6 256 174 3 1399 212 0 36 0 chr5 106697363 106697391 -45839868 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1399 2307 91 16 6 chr5 106697674 106697995 -45839264 - ORR1A3 LTR MaLR 0 326 3 3 1399 342 0 0 0 chr5 106698055 106698093 -45839166 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 1399 2170 182 25 14 chr5 106698452 106698892 -45838367 + RMER19B LTR ERVK 1 445 -457 3 1399 903 294 17 21 chr5 106700301 106700322 -45836937 - B4A SINE B4 -4 288 270 3 1399 450 0 0 0 chr5 106700322 106700372 -45836887 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1399 903 294 17 21 chr5 106700372 106700638 -45836621 - B4A SINE B4 -23 269 2 3 1399 180 0 0 0 chr5 106702241 106702261 -45834998 + (TAA)n Simple_repeat Simple_repeat 1 20 0 3 1399 284 48 24 0 chr5 106703117 106703159 -45834100 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 3 1399 479 316 111 51 chr5 106703369 106703702 -45833557 - MLT1B LTR MaLR -16 374 22 3 1399 871 212 256 43 chr5 106703710 106704011 -45833248 + ORR1D2 LTR MaLR 6 370 0 3 1399 444 37 0 0 chr5 106704428 106704482 -45832777 + (TATG)n Simple_repeat Simple_repeat 1 54 0 3 1399 555 218 0 0 chr5 106705743 106705984 -45831275 + (CA)n Simple_repeat Simple_repeat 1 241 0 3 1399 1487 240 61 5 chr5 106706754 106707148 -45830111 - MTD LTR MaLR -3 416 1 3 1399 198 171 0 0 chr5 106707152 106707193 -45830066 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1399 1976 174 66 87 chr5 106707723 106707939 -45829320 + RLTR16 LTR ERVK 1 199 -306 3 1399 1236 48 0 0 chr5 106707939 106708085 -45829174 - B1_Mus2 SINE Alu -1 146 1 3 1399 1976 174 66 87 chr5 106708085 106708384 -45828875 + RLTR16 LTR ERVK 200 505 0 3 1399 507 247 132 54 chr5 106708563 106708768 -45828491 - Lx9 LINE L1 -152 7492 7272 3 1399 651 268 17 11 chr5 106708989 106709170 -45828089 - B3A SINE B2 -16 182 1 3 1399 248 87 72 0 chr5 106709760 106709829 -45827430 + (TTTG)n Simple_repeat Simple_repeat 2 75 0 3 1399 349 113 14 40 chr5 106710571 106710645 -45826614 + (TGAA)n Simple_repeat Simple_repeat 2 73 0 3 1399 27 49 0 0 chr5 106712787 106712828 -45824431 + AT_rich Low_complexity Low_complexity 1 41 0 3 1399 498 242 88 115 chr5 106712886 106713068 -45824191 - B3A SINE B2 -14 181 5 3 1399 757 217 0 7 chr5 106713151 106713295 -45823964 + B1_Mur1 SINE Alu 2 144 -5 3 1399 391 202 8 8 chr5 106713437 106713567 -45823692 + (TG)n Simple_repeat Simple_repeat 2 131 0 3 1399 427 295 196 26 chr5 106713568 106713798 -45823461 - B4A SINE B4 0 292 24 3 1399 25 0 0 0 chr5 106714189 106714214 -45823045 + AT_rich Low_complexity Low_complexity 1 25 0 3 1399 6016 42 19 7 chr5 106714864 106715601 -45821658 - L1_Mus1 LINE L1 0 6567 5822 3 1399 23 68 0 0 chr5 106717325 106717369 -45819890 + AT_rich Low_complexity Low_complexity 1 44 0 3 1399 796 20 20 0 chr5 106717510 106717612 -45819647 + (CA)n Simple_repeat Simple_repeat 1 104 0 3 1399 517 307 7 0 chr5 106717663 106717803 -45819456 - B1F2 SINE Alu -8 141 1 3 1399 207 0 0 0 chr5 106717895 106717918 -45819341 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3 1399 27 0 0 0 chr5 106717970 106717997 -45819262 + AT_rich Low_complexity Low_complexity 1 27 0 3 1399 1183 148 0 5 chr5 106718013 106718216 -45819043 - ORR1A0 LTR MaLR -99 247 46 3 1399 630 0 0 0 chr5 106719185 106719255 -45818004 + (TC)n Simple_repeat Simple_repeat 1 70 0 3 1399 1432 59 5 21 chr5 106719325 106719515 -45817744 + B2_Mm2 SINE B2 1 187 -8 3 1399 432 0 0 0 chr5 106720080 106720128 -45817131 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1399 186 191 0 0 chr5 106720836 106720878 -45816381 + C-rich Low_complexity Low_complexity 3 44 0 3 1399 283 200 26 39 chr5 106720898 106720976 -45816283 + CT-rich Low_complexity Low_complexity 5 81 0 3 1399 803 284 20 50 chr5 106722545 106722845 -45814414 + B4A SINE B4 1 291 -1 3 1399 265 329 0 0 chr5 106722847 106722926 -45814333 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 1399 230 271 11 45 chr5 106722935 106723024 -45814235 + Lx9 LINE L1 6251 6336 -1308 3 1399 459 231 0 0 chr5 106723047 106723181 -45814078 + (CA)n Simple_repeat Simple_repeat 2 135 0 3 1399 288 0 0 0 chr5 106724192 106724224 -45813035 + (T)n Simple_repeat Simple_repeat 1 32 0 3 1399 264 111 0 0 chr5 106725724 106725769 -45811490 + (A)n Simple_repeat Simple_repeat 1 45 0 3 1399 268 291 21 55 chr5 106725891 106726074 -45811185 + MIR3 SINE MIR 1 175 -93 3 1399 1051 188 0 0 chr5 106727138 106727314 -45809945 - B3 SINE B2 -40 176 1 3 1399 240 298 12 12 chr5 106727369 106727454 -45809805 + (CA)n Simple_repeat Simple_repeat 2 86 0 3 1399 1049 136 6 0 chr5 106728109 106728286 -45808973 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 3 1399 1402 176 47 10 chr5 106730799 106731098 -45806161 - L1_Mur3 LINE L1 -1874 4006 3697 3 1399 327 200 49 24 chr5 106731098 106731180 -45806079 + Lx7 LINE L1 7613 7696 0 3 1399 1323 92 54 0 chr5 106732508 106732693 -45804566 + B2_Mm2 SINE B2 1 195 0 3 1399 22 0 0 0 chr5 106733806 106733828 -45803431 + AT_rich Low_complexity Low_complexity 1 22 0 3 1399 775 299 78 53 chr5 106734143 106734503 -45802756 - MTE2a LTR MaLR -9 370 2 3 1399 643 179 68 20 chr5 106734504 106734652 -45802607 - MERVL_2A-int LTR ERVL 0 5761 5607 3 1399 198 50 24 48 chr5 106734715 106734757 -45802502 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 1399 248 125 0 59 chr5 106734803 106734871 -45802388 + CT-rich Low_complexity Low_complexity 1 64 0 3 1399 386 242 18 0 chr5 106736155 106736253 -45801006 - PB1D10 SINE Alu -15 105 1 3 1399 387 303 174 14 chr5 106736370 106736664 -45800595 + L1MA4 LINE L1 5909 6249 -51 3 1399 218 189 366 9 chr5 106736820 106736932 -45800327 + MIRb SINE MIR 117 268 0 3 1399 287 225 13 66 chr5 106737798 106737874 -45799385 + ID4 SINE ID 2 73 -10 3 1399 313 266 78 17 chr5 106738066 106738181 -45799078 + L1MEf LINE L1 1485 1606 -5728 3 1399 201 192 53 15 chr5 106738181 106738313 -45798946 + (TA)n Simple_repeat Simple_repeat 2 138 0 3 1399 623 311 77 38 chr5 106738446 106739207 -45798052 + L1MEf LINE L1 1859 2586 -4516 3 1399 302 214 146 0 chr5 106739420 106739509 -45797750 + L1MEf LINE L1 4454 4555 -2451 3 1399 336 301 131 43 chr5 106739650 106740072 -45797187 + L1ME1 LINE L1 3914 4383 -1763 3 1399 519 221 19 19 chr5 106740145 106740563 -45796696 + GA-rich Low_complexity Low_complexity 1 418 0 3 1399 915 206 50 15 chr5 106741097 106741299 -45795960 - B3 SINE B2 -6 210 2 3 1399 513 278 128 32 chr5 106741337 106741763 -45795496 + L1ME1 LINE L1 4951 5431 -748 3 1399 736 118 34 0 chr5 106741843 106741962 -45795297 + B1_Mur4 SINE Alu 5 127 -23 3 1399 264 149 0 0 chr5 106741969 106742016 -45795243 + (GGGA)n Simple_repeat Simple_repeat 1 47 0 3 1399 233 258 0 16 chr5 106742016 106742079 -45795180 + G-rich Low_complexity Low_complexity 3 64 0 3 1399 1017 84 0 43 chr5 106742084 106742270 -45794989 + (GGAGA)n Simple_repeat Simple_repeat 3 180 0 3 1399 419 311 32 49 chr5 106742326 106742610 -45794649 + L1ME1 LINE L1 5547 5825 -354 3 1399 225 329 12 12 chr5 106742936 106743016 -45794243 - MIRb SINE MIR -183 85 6 3 1399 812 313 36 18 chr5 106743466 106743746 -45793513 + B4A SINE B4 8 292 0 3 1399 204 245 0 0 chr5 106743780 106743833 -45793426 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 1399 772 140 0 8 chr5 106744966 106745096 -45792163 + B1_Mur3 SINE Alu 20 148 -1 3 1399 399 56 0 0 chr5 106745979 106746033 -45791226 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 3 1399 650 268 73 29 chr5 106746984 106747188 -45790071 - ID_B1 SINE B4 -2 222 10 3 1399 252 0 0 0 chr5 106748923 106748951 -45788308 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 3 1399 22 70 0 0 chr5 106750502 106750545 -45786714 + GC_rich Low_complexity Low_complexity 1 43 0 3 1399 21 0 0 0 chr5 106750970 106750991 -45786268 + AT_rich Low_complexity Low_complexity 1 21 0 3 1399 324 179 0 0 chr5 106751924 106752002 -45785257 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1399 1179 49 0 0 chr5 106752743 106752885 -45784374 - B1_Mus1 SINE Alu -5 143 2 4 1399 290 115 0 16 chr5 106753637 106753699 -45783560 + (CAAAAA)n Simple_repeat Simple_repeat 5 65 0 4 1399 331 266 2 25 chr5 106753768 106753884 -45783375 + B4 SINE B4 2 107 -185 4 1399 407 211 159 96 chr5 106753928 106754026 -45783233 + B4 SINE B4 92 213 -79 4 1399 432 0 0 0 chr5 106754026 106754074 -45783185 + (CCA)n Simple_repeat Simple_repeat 1 48 0 4 1399 407 211 159 96 chr5 106754074 106754132 -45783127 + B4 SINE B4 214 258 -34 4 1399 294 29 0 0 chr5 106754188 106754223 -45783036 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 1399 328 277 128 0 chr5 106755597 106755691 -45781568 - ID_B1 SINE B4 -39 185 80 4 1399 1085 178 78 50 chr5 106755925 106756144 -45781115 + URR1B DNA MER1_type 1 225 0 4 1399 711 90 0 0 chr5 106757267 106757367 -45779892 + (TG)n Simple_repeat Simple_repeat 2 101 0 4 1399 315 0 0 0 chr5 106757555 106757590 -45779669 + (TATG)n Simple_repeat Simple_repeat 2 36 0 4 1399 352 267 0 0 chr5 106758510 106758596 -45778663 - PB1D7 SINE Alu 0 120 35 4 1399 184 100 0 48 chr5 106758699 106758741 -45778518 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1399 186 329 22 117 chr5 106759062 106759241 -45778018 + L2c LINE L2 3214 3375 -12 4 1399 489 127 8 33 chr5 106760357 106760479 -45776780 + (CAGAGA)n Simple_repeat Simple_repeat 6 124 0 4 1399 596 254 94 36 chr5 106761411 106761603 -45775656 + B4 SINE B4 1 203 -89 4 1399 209 179 0 82 chr5 106762102 106762175 -45775084 + G-rich Low_complexity Low_complexity 6 72 0 4 1399 376 271 41 0 chr5 106763737 106763859 -45773400 - MTEb LTR MaLR -184 195 69 4 1399 386 320 75 27 chr5 106764370 106764556 -45772703 - MIRb SINE MIR -4 264 70 4 1399 886 119 24 0 chr5 106765484 106765652 -45771607 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 4 1399 1560 131 138 20 chr5 106765660 106765957 -45771302 - Lx3A LINE L1 -6 6975 6644 4 1399 966 65 35 0 chr5 106766396 106766565 -45770694 + (CATAA)n Simple_repeat Simple_repeat 5 179 0 4 1399 590 121 21 21 chr5 106766565 106766585 -45770674 + (CATAC)n Simple_repeat Simple_repeat 1 20 0 4 1399 974 81 23 0 chr5 106766585 106766757 -45770502 + (CATAA)n Simple_repeat Simple_repeat 2 177 0 4 1399 590 121 21 21 chr5 106766757 106766880 -45770379 + (CATAC)n Simple_repeat Simple_repeat 1 124 0 4 1399 540 269 41 28 chr5 106766888 106767033 -45770226 + B4A SINE B4 142 288 -4 4 1399 1076 23 8 0 chr5 106767123 106767254 -45770005 + (GA)n Simple_repeat Simple_repeat 1 132 0 4 1399 466 311 159 45 chr5 106768212 106768469 -45768790 + B4A SINE B4 5 290 -2 4 1399 220 230 0 51 chr5 106768471 106768549 -45768710 + (CATA)n Simple_repeat Simple_repeat 3 76 0 4 1399 232 257 97 107 chr5 106768569 106768765 -45768494 + B3A SINE B2 5 198 0 4 1399 227 253 11 0 chr5 106769014 106769109 -45768150 + (CA)n Simple_repeat Simple_repeat 1 96 0 4 1399 22 0 0 0 chr5 106771095 106771117 -45766142 + GC_rich Low_complexity Low_complexity 1 22 0 4 1399 578 234 55 0 chr5 106771322 106771450 -45765809 - B1F SINE Alu -1 148 14 4 1399 509 135 9 35 chr5 106771704 106771819 -45765440 + CT-rich Low_complexity Low_complexity 3 114 0 4 1399 1643 144 181 9 chr5 106771822 106772165 -45765094 - Lx LINE L1 -8 6646 6245 4 1399 532 288 7 0 chr5 106772296 106772435 -45764824 + B4 SINE B4 9 148 -144 4 1399 400 228 54 0 chr5 106772470 106772562 -45764697 + B4 SINE B4 122 218 -74 4 1399 291 28 0 0 chr5 106773853 106773889 -45763370 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4 1399 215 330 147 35 chr5 106775565 106775763 -45761496 + MIR SINE MIR 23 242 -20 4 1399 207 69 0 0 chr5 106776443 106776472 -45760787 + (TTTTTA)n Simple_repeat Simple_repeat 6 34 0 4 1399 1003 231 19 0 chr5 106777056 106777268 -45759991 + B3 SINE B2 1 216 0 4 1399 2275 119 39 21 chr5 106777280 106777667 -45759592 + Lx2 LINE L1 6604 6997 0 4 1399 213 235 20 0 chr5 106777911 106777962 -45759297 + B4A SINE B4 4 55 -237 4 1399 620 319 132 16 chr5 106778039 106778297 -45758962 + B4 SINE B4 3 290 -2 4 1399 224 212 15 0 chr5 106778323 106778389 -45758870 + GA-rich Low_complexity Low_complexity 1 67 0 4 1399 356 250 265 30 chr5 106781547 106781679 -45755580 + RSINE1 SINE B4 3 165 0 4 1399 201 121 0 0 chr5 106781686 106781719 -45755540 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1399 794 291 34 8 chr5 106781771 106782010 -45755249 - MER47B DNA MER2_type -173 245 1 4 1399 201 87 20 61 chr5 106782275 106782324 -45754935 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 4 1399 251 239 27 9 chr5 106783251 106783361 -45753898 + (CA)n Simple_repeat Simple_repeat 2 113 0 4 1399 502 312 0 11 chr5 106784206 106784381 -45752878 + (TG)n Simple_repeat Simple_repeat 2 174 0 4 1399 348 222 43 22 chr5 106784763 106784855 -45752404 + RLTR23 LTR ERV1 333 426 -4 4 1399 394 293 6 35 chr5 106784858 106785028 -45752231 + (TG)n Simple_repeat Simple_repeat 2 166 0 4 1399 483 297 107 28 chr5 106785100 106785315 -45751944 - B4A SINE B4 0 292 61 4 1399 976 220 125 58 chr5 106785518 106785861 -45751398 + ORR1D2 LTR MaLR 5 370 0 4 1399 405 0 0 0 chr5 106786228 106786273 -45750986 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1399 817 179 54 49 chr5 106786925 106787130 -45750129 - ORR1C1 LTR MaLR -1 377 172 4 1399 248 195 260 0 chr5 106787147 106787224 -45750035 - ORR1C1 LTR MaLR -263 111 15 4 1399 3808 110 101 12 chr5 106787802 106788484 -45748775 - RMER6A LTR ERVK -13 743 1 4 1399 3281 164 33 7 chr5 106788485 106789057 -45748202 - RMER6-int LTR ERVK -2 3175 2589 4 1399 345 190 0 0 chr5 106789062 106789120 -45748139 - LSU-rRNA_Hsa rRNA rRNA -3197 1838 1781 4 1399 3330 141 76 33 chr5 106789121 106789723 -45747536 - RMER6-int LTR ERVK -2543 634 7 4 1399 4633 115 36 16 chr5 106789750 106790491 -45746768 - RMER6A LTR ERVK 0 756 1 4 1399 767 258 25 94 chr5 106790952 106791354 -45745905 - RLTR26 LTR ERVK -212 430 21 4 1399 229 296 0 46 chr5 106792820 106792951 -45744308 + G-rich Low_complexity Low_complexity 3 127 0 4 1399 261 0 0 0 chr5 106793374 106793403 -45743856 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1399 224 216 27 13 chr5 106794082 106794157 -45743102 + (TA)n Simple_repeat Simple_repeat 2 77 0 4 1399 280 277 35 14 chr5 106795078 106795221 -45742038 + (CCCCAG)n Simple_repeat Simple_repeat 1 146 0 4 1399 211 167 48 0 chr5 106795241 106795283 -45741976 + (CCTG)n Simple_repeat Simple_repeat 3 46 0 4 1399 329 233 10 0 chr5 106796068 106796106 -45741153 + (ATG)n Simple_repeat Simple_repeat 2 39 0 4 1399 1373 125 74 155 chr5 106796106 106796295 -45740964 - RMER17C LTR ERVK 0 410 225 4 1399 198 128 0 0 chr5 106796295 106796334 -45740925 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 4 1399 1373 125 74 155 chr5 106796334 106796590 -45740669 - RMER17C LTR ERVK -186 224 1 4 1399 329 233 10 0 chr5 106796590 106796654 -45740605 + (ATG)n Simple_repeat Simple_repeat 3 67 0 4 1399 365 283 57 0 chr5 106797287 106797393 -45739866 + PB1D10 SINE Alu 1 112 -5 4 1399 230 193 0 17 chr5 106798108 106798166 -45739093 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1399 587 241 60 103 chr5 106798373 106798674 -45738585 - B4 SINE B4 -4 288 1 4 1399 252 91 22 43 chr5 106798903 106798949 -45738310 + RMER15 LTR ERVL 28 72 -503 4 1399 884 175 58 0 chr5 106798949 106799120 -45738139 + RLTR27 LTR ERVK 1 181 -128 4 1399 479 253 125 10 chr5 106799257 106799449 -45737810 + RMER15 LTR ERVL 361 574 -1 4 1399 2999 40 0 24 chr5 106800037 106800399 -45736860 + MTB LTR MaLR 1 359 -41 4 1399 3629 38 28 0 chr5 106800399 106800823 -45736436 + RLTR10C LTR ERVK 1 436 0 4 1399 2999 40 0 24 chr5 106800823 106800870 -45736389 + MTB LTR MaLR 360 400 0 4 1399 381 361 31 57 chr5 106801479 106801708 -45735551 - MER58A DNA MER1_type -1 223 1 4 1399 732 191 21 0 chr5 106801801 106801942 -45735317 + B1_Mur3 SINE Alu 4 147 -2 4 1399 844 220 108 32 chr5 106801946 106802195 -45735064 + Lx8 LINE L1 7119 7386 -87 4 1399 641 273 129 10 chr5 106802425 106802743 -45734516 + ORR1E LTR MaLR 1 379 0 4 1399 1817 53 4 0 chr5 106803295 106803541 -45733718 + MTB LTR MaLR 1 247 -153 4 1399 183 42 0 0 chr5 106803673 106803697 -45733562 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1399 308 291 158 30 chr5 106803942 106804428 -45732831 + L1_Mur3 LINE L1 1323 1859 -4021 4 1399 478 294 85 30 chr5 106804586 106804821 -45732438 + MTEa LTR MaLR 127 374 -5 4 1399 1337 62 44 28 chr5 106804843 106805025 -45732234 + B2_Mm2 SINE B2 3 187 -8 4 1399 207 0 0 0 chr5 106805574 106805597 -45731662 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1399 21 0 0 0 chr5 106805888 106805909 -45731350 + GC_rich Low_complexity Low_complexity 1 21 0 4 1399 273 324 74 0 chr5 106806549 106806657 -45730602 + ORR1E LTR MaLR 2 117 -242 4 1399 270 274 11 97 chr5 106807406 106807499 -45729760 - PB1 SINE Alu -30 97 13 4 1399 452 246 76 0 chr5 106807591 106807709 -45729550 - ID_B1 SINE B4 -5 219 93 4 1399 646 288 55 36 chr5 106808169 106808443 -45728816 + MTD LTR MaLR 5 283 -136 4 1399 1061 48 0 75 chr5 106808699 106808858 -45728401 - B1_Mm SINE Alu 0 147 1 4 1399 366 23 0 0 chr5 106809354 106809397 -45727862 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 4 1399 428 296 88 0 chr5 106809453 106809578 -45727681 + B1F1 SINE Alu 3 138 -11 4 1399 252 0 0 0 chr5 106810373 106810401 -45726858 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1399 853 180 0 21 chr5 106810618 106810760 -45726499 + B1_Mur2 SINE Alu 1 139 -10 4 1399 482 0 17 0 chr5 106810777 106810835 -45726424 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 4 1399 224 122 0 24 chr5 106810842 106810884 -45726375 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1399 446 49 16 0 chr5 106811727 106811788 -45725471 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 4 1399 659 146 7 0 chr5 106811849 106811970 -45725289 + (CA)n Simple_repeat Simple_repeat 1 122 0 4 1399 324 0 0 0 chr5 106811970 106812006 -45725253 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1399 659 146 7 0 chr5 106812006 106812021 -45725238 + (CA)n Simple_repeat Simple_repeat 1 15 0 5 1399 240 258 221 63 chr5 106812059 106812394 -45724865 + L1MC3 LINE L1 6717 7104 -681 5 1399 488 324 142 16 chr5 106812458 106812888 -45724371 + L1MC3 LINE L1 7253 7736 -49 5 1399 881 265 36 55 chr5 106818277 106818585 -45718674 + MT2A LTR ERVL 147 448 -85 5 1399 501 17 0 0 chr5 106818863 106818921 -45718338 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1399 552 15 0 0 chr5 106819160 106819225 -45718034 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1399 183 222 0 0 chr5 106819287 106819332 -45717927 + (TA)n Simple_repeat Simple_repeat 1 45 0 5 1399 948 222 191 14 chr5 106819426 106819714 -45717545 + ORR1D2 LTR MaLR 32 370 0 5 1399 591 335 136 21 chr5 106820561 106820669 -45716590 - LTR16E1 LTR ERVL -2 536 419 5 1399 243 0 0 0 chr5 106820669 106820696 -45716563 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1399 591 335 136 21 chr5 106820696 106820711 -45716548 - LTR16E1 LTR ERVL -120 418 406 5 1399 1010 232 19 5 chr5 106820711 106820923 -45716336 + B3 SINE B2 1 215 -1 5 1399 959 112 7 0 chr5 106820924 106821076 -45716183 + (GAA)n Simple_repeat Simple_repeat 3 155 0 5 1399 591 335 136 21 chr5 106821076 106821421 -45715838 - LTR16E1 LTR ERVL -133 405 11 5 1399 255 282 0 20 chr5 106822326 106822478 -45714781 + (TG)n Simple_repeat Simple_repeat 2 150 0 5 1399 958 237 67 30 chr5 106822515 106822785 -45714474 - B4 SINE B4 -12 280 1 5 1400 1301 209 22 54 chr5 106823789 106824078 -45713181 - MTD LTR MaLR -116 303 19 5 1400 197 0 0 67 chr5 106824078 106824108 -45713151 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 5 1400 1301 209 22 54 chr5 106824108 106824131 -45713128 - MTD LTR MaLR -401 18 1 5 1400 400 279 9 35 chr5 106824213 106824328 -45712931 + PB1D7 SINE Alu 1 112 -8 5 1400 4713 106 36 11 chr5 106824337 106825084 -45712175 + ORR1A2-int LTR MaLR 1198 1963 0 5 1400 2521 89 0 0 chr5 106825084 106825409 -45711850 + ORR1A2 LTR MaLR 1 325 -2 5 1400 201 147 0 0 chr5 106825924 106825958 -45711301 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1400 23 0 0 0 chr5 106826362 106826385 -45710874 + AT_rich Low_complexity Low_complexity 1 23 0 5 1400 234 141 61 30 chr5 106826554 106826620 -45710639 + (TTAAA)n Simple_repeat Simple_repeat 3 70 0 5 1400 1181 36 0 0 chr5 106826623 106826762 -45710497 + B1_Mus1 SINE Alu 1 139 -9 5 1400 869 196 23 11 chr5 106827077 106827252 -45710007 - B3A SINE B2 -21 177 1 5 1400 738 301 61 74 chr5 106827476 106827921 -45709338 - Lx9 LINE L1 -196 7448 7010 5 1400 842 263 59 42 chr5 106828462 106828748 -45708511 + B4 SINE B4 2 292 0 5 1400 2005 160 60 14 chr5 106828768 106829135 -45708124 - ORR1C2 LTR MaLR 0 384 1 5 1400 182 118 29 0 chr5 106829145 106829179 -45708080 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1400 508 260 81 107 chr5 106832016 106832326 -45704933 + L1M2 LINE L1 4746 5047 -1096 5 1400 285 193 33 2 chr5 106832408 106832480 -45704779 + L1M2 LINE L1 5362 5435 -754 5 1400 212 253 12 48 chr5 106832600 106832683 -45704576 + B1F SINE Alu 39 118 -31 5 1400 216 213 21 0 chr5 106832916 106832963 -45704296 + B1F SINE Alu 71 118 -31 5 1400 240 169 102 92 chr5 106832949 106833047 -45704212 + ID_B1 SINE B4 98 196 -28 5 1400 229 292 20 40 chr5 106833048 106833148 -45704111 + B1F SINE Alu 39 136 -13 5 1400 335 342 16 24 chr5 106833169 106833292 -45703967 + PB1 SINE Alu 6 127 0 5 1400 1221 228 152 11 chr5 106833455 106833715 -45703544 - MTC LTR MaLR 0 421 147 5 1400 342 0 0 0 chr5 106833715 106833753 -45703506 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1400 1221 228 152 11 chr5 106833753 106833860 -45703399 - MTC LTR MaLR -275 146 3 5 1400 188 370 114 6 chr5 106834894 106835060 -45702199 - L2 LINE L2 -843 2576 2393 5 1400 636 256 41 0 chr5 106835127 106835299 -45701960 + B3A SINE B2 1 179 -19 5 1400 236 179 13 0 chr5 106835307 106835385 -45701874 + (CA)n Simple_repeat Simple_repeat 1 79 0 5 1400 509 197 4 19 chr5 106835402 106835667 -45701592 + (CA)n Simple_repeat Simple_repeat 1 260 0 5 1400 28 29 0 0 chr5 106835700 106835735 -45701524 + AT_rich Low_complexity Low_complexity 1 35 0 5 1400 670 227 24 119 chr5 106836474 106836684 -45700575 + B3A SINE B2 9 198 0 5 1400 1100 120 9 0 chr5 106836775 106837001 -45700258 + (GA)n Simple_repeat Simple_repeat 1 228 0 5 1400 240 268 179 0 chr5 106837131 106837243 -45700016 - MLT1E1 LTR MaLR -383 271 140 5 1400 390 355 172 49 chr5 106837298 106837474 -45699785 + L1MC4a LINE L1 5256 5435 -2447 5 1400 1109 52 7 0 chr5 106837474 106837609 -45699650 + B1_Mus1 SINE Alu 4 139 -9 5 1400 567 0 0 0 chr5 106837610 106837673 -45699586 + (GAAAA)n Simple_repeat Simple_repeat 3 65 0 5 1400 695 53 21 0 chr5 106837673 106837768 -45699491 + (GGGGA)n Simple_repeat Simple_repeat 4 100 0 5 1400 390 355 172 49 chr5 106837768 106838062 -45699197 + L1MC4a LINE L1 5436 5797 -2085 5 1400 3121 35 61 3 chr5 106838062 106838438 -45698821 + MTB LTR MaLR 3 400 0 5 1400 390 355 172 49 chr5 106838438 106838473 -45698786 + L1MC4a LINE L1 5798 5826 -2056 5 1400 413 254 78 9 chr5 106838770 106838786 -45698473 + B4 SINE B4 69 92 -200 5 1400 686 162 0 0 chr5 106838786 106838891 -45698368 + B1_Mur3 SINE Alu 4 108 -41 5 1400 225 0 0 0 chr5 106839179 106839204 -45698055 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1400 821 267 39 59 chr5 106839369 106839624 -45697635 + B4A SINE B4 43 292 0 5 1400 574 178 26 53 chr5 106840000 106840113 -45697146 + PB1D9 SINE Alu 5 114 -6 5 1400 237 192 19 0 chr5 106840114 106840166 -45697093 + (TTAA)n Simple_repeat Simple_repeat 1 53 0 5 1400 718 303 18 31 chr5 106840536 106840822 -45696437 + B4A SINE B4 3 284 -8 5 1400 334 356 11 0 chr5 106841602 106841692 -45695567 + PB1D10 SINE Alu 1 91 -26 5 1400 1120 161 45 10 chr5 106841848 106842049 -45695210 + B3 SINE B2 1 208 -8 5 1400 207 0 0 0 chr5 106842222 106842245 -45695014 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5 1400 533 301 35 0 chr5 106843243 106843416 -45693843 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1400 296 253 38 0 chr5 106843823 106843902 -45693357 + ID4 SINE ID 2 83 0 5 1400 525 343 101 14 chr5 106844515 106844802 -45692457 - L1MEg LINE L1 -4263 1821 1510 5 1400 364 248 174 17 chr5 106844816 106844931 -45692328 - RSINE1 SINE B4 -31 134 2 5 1400 270 229 0 0 chr5 106845437 106845533 -45691726 + CT-rich Low_complexity Low_complexity 1 96 0 5 1400 269 226 34 0 chr5 106846988 106847054 -45690205 - PB1D10 SINE Alu 0 149 57 5 1400 21 0 0 0 chr5 106847092 106847113 -45690146 + AT_rich Low_complexity Low_complexity 1 21 0 5 1400 22 35 0 0 chr5 106847174 106847203 -45690056 + AT_rich Low_complexity Low_complexity 1 29 0 5 1400 279 0 0 0 chr5 106847405 106847436 -45689823 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1400 202 109 43 21 chr5 106847658 106847705 -45689554 + G-rich Low_complexity Low_complexity 1 48 0 5 1400 3736 42 5 2 chr5 106847734 106848169 -45689090 + RLTR10C LTR ERVK 1 436 0 5 1400 208 278 122 38 chr5 106848288 106848419 -45688840 + MIRb SINE MIR 98 239 -29 5 1400 180 0 0 0 chr5 106849404 106849424 -45687835 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1400 216 0 0 0 chr5 106849942 106849966 -45687293 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1400 399 167 0 53 chr5 106851114 106851190 -45686069 + B1_Mur4 SINE Alu 43 114 -36 5 1400 240 346 38 0 chr5 106851271 106851404 -45685855 + C-rich Low_complexity Low_complexity 6 143 0 5 1400 198 0 0 0 chr5 106852742 106852764 -45684495 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1400 384 340 51 13 chr5 106852818 106852976 -45684283 + L1MC LINE L1 3254 3417 -2729 5 1400 408 287 261 26 chr5 106853077 106853388 -45683871 - Lx8 LINE L1 -9 7464 7081 5 1400 231 349 54 65 chr5 106853455 106853749 -45683510 + L1MD LINE L1 3689 3979 -2167 5 1400 351 368 0 9 chr5 106853789 106853904 -45683355 + PB1D10 SINE Alu 4 117 0 5 1400 296 271 143 20 chr5 106853963 106854110 -45683149 + L1MC LINE L1 4750 4914 -1232 5 1400 429 70 0 0 chr5 106854445 106854502 -45682757 + (GA)n Simple_repeat Simple_repeat 2 58 0 5 1400 773 304 27 36 chr5 106854568 106854771 -45682488 + ID_B1 SINE B4 2 204 -20 5 1400 351 0 0 0 chr5 106854771 106854810 -45682449 + (GA)n Simple_repeat Simple_repeat 2 40 0 5 1400 773 304 27 36 chr5 106854810 106854831 -45682428 + ID_B1 SINE B4 205 224 0 5 1400 286 385 0 37 chr5 106855038 106855146 -45682113 + RSINE1 SINE B4 2 105 -60 5 1400 1020 219 15 0 chr5 106855177 106855382 -45681877 + B3 SINE B2 2 209 -7 5 1400 779 268 59 8 chr5 106855579 106855816 -45681443 + B4A SINE B4 44 292 0 5 1400 207 139 0 0 chr5 106855825 106855861 -45681398 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 5 1400 192 40 0 0 chr5 106855915 106855940 -45681319 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 5 1400 683 204 0 15 chr5 106855941 106856075 -45681184 - B1_Mur2 SINE Alu -8 141 10 5 1400 266 308 45 55 chr5 106856213 106856323 -45680936 + LTR16A LTR ERVL 122 230 -221 5 1400 188 67 0 32 chr5 106857139 106857170 -45680089 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 5 1400 795 88 0 0 chr5 106857302 106857415 -45679844 + (GAA)n Simple_repeat Simple_repeat 2 114 0 5 1400 22 0 0 0 chr5 106857415 106857437 -45679822 + AT_rich Low_complexity Low_complexity 1 22 0 5 1400 359 203 39 26 chr5 106857792 106857907 -45679352 + B3 SINE B2 1 198 -18 5 1400 1389 62 34 0 chr5 106857909 106858088 -45679171 + B2_Mm2 SINE B2 2 186 -9 5 1400 625 276 34 6 chr5 106858094 106858269 -45678990 + B4 SINE B4 83 262 -30 5 1400 527 188 19 19 chr5 106858240 106858343 -45678916 + B1_Mur1 SINE Alu 34 136 -13 5 1400 293 0 27 0 chr5 106858343 106858380 -45678879 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1400 631 250 35 84 chr5 106858390 106858617 -45678642 + B3 SINE B2 1 216 0 5 1400 202 224 20 0 chr5 106858684 106858733 -45678526 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1400 779 164 8 0 chr5 106858865 106858993 -45678266 - B1_Mus1 SINE Alu -18 130 2 5 1400 471 302 41 116 chr5 106858993 106859382 -45677877 - LTR40a LTR ERVL -9 510 151 5 1400 564 15 0 0 chr5 106859566 106859631 -45677628 + (GGA)n Simple_repeat Simple_repeat 3 67 0 5 1400 401 299 81 13 chr5 106859668 106859817 -45677442 - MLT1F LTR MaLR -1 547 389 6 1400 251 250 47 59 chr5 106859891 106859976 -45677283 - MLT1F LTR MaLR -287 282 199 6 1400 858 88 131 0 chr5 106860060 106860197 -45677062 + URR1A DNA MER1_type 72 226 0 6 1400 591 15 0 0 chr5 106862492 106862560 -45674699 + (TC)n Simple_repeat Simple_repeat 2 69 0 6 1400 465 103 0 0 chr5 106864037 106864105 -45673154 + (GA)n Simple_repeat Simple_repeat 2 69 0 6 1400 1026 205 40 0 chr5 106864487 106864687 -45672572 + B3 SINE B2 9 216 0 6 1400 838 170 14 0 chr5 106864698 106864839 -45672420 + B1_Mus2 SINE Alu 2 144 -3 6 1400 192 77 0 0 chr5 106864841 106864867 -45672392 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 6 1400 889 140 0 29 chr5 106865712 106865852 -45671407 + B1_Mur4 SINE Alu 13 148 -2 6 1400 595 171 147 0 chr5 106865919 106866048 -45671211 + B1_Mur3 SINE Alu 1 148 -1 6 1400 242 161 54 0 chr5 106867394 106867450 -45669809 + T-rich Low_complexity Low_complexity 2 60 0 6 1400 198 143 0 0 chr5 106868115 106868150 -45669109 + (TCCG)n Simple_repeat Simple_repeat 3 37 0 6 1400 219 69 0 0 chr5 106868343 106868372 -45668887 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1400 203 146 24 0 chr5 106870776 106870817 -45666442 + A-rich Low_complexity Low_complexity 3 44 0 6 1400 234 271 0 0 chr5 106872869 106872954 -45664305 + (CA)n Simple_repeat Simple_repeat 2 86 0 6 1400 305 290 6 0 chr5 106873012 106873188 -45664071 + (CA)n Simple_repeat Simple_repeat 1 177 0 6 1400 458 198 12 0 chr5 106873629 106873710 -45663549 + ID4_ SINE ID 2 83 0 6 1400 871 169 14 0 chr5 106873777 106873919 -45663340 + B1_Mur4 SINE Alu 6 149 -1 6 1400 813 168 23 0 chr5 106873919 106874092 -45663167 + GA-rich Low_complexity Low_complexity 1 177 0 6 1400 211 300 24 24 chr5 106874196 106874278 -45662981 + (CATG)n Simple_repeat Simple_repeat 3 84 0 6 1400 250 194 41 14 chr5 106874281 106874354 -45662905 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 6 1400 221 75 0 131 chr5 106875049 106875156 -45662103 + (TTGGGG)n Simple_repeat Simple_repeat 1 93 0 6 1400 213 121 0 0 chr5 106880083 106880116 -45657143 + (TAAG)n Simple_repeat Simple_repeat 3 35 0 6 1400 621 27 0 0 chr5 106880263 106880338 -45656921 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 1400 405 0 0 0 chr5 106880708 106880753 -45656506 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1400 200 35 35 0 chr5 106882001 106882030 -45655229 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 6 1400 558 29 0 0 chr5 106882045 106882113 -45655146 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1400 23 0 0 0 chr5 106882531 106882554 -45654705 + GC_rich Low_complexity Low_complexity 1 23 0 6 1400 261 0 0 0 chr5 106885465 106885494 -45651765 + (TAA)n Simple_repeat Simple_repeat 1 29 0 6 1400 186 143 0 0 chr5 106887202 106887237 -45650022 + (CCG)n Simple_repeat Simple_repeat 2 36 0 6 1400 25 0 0 0 chr5 106887258 106887283 -45649976 + GC_rich Low_complexity Low_complexity 1 25 0 6 1400 21 0 0 0 chr5 106887393 106887414 -45649845 + GC_rich Low_complexity Low_complexity 1 21 0 6 1400 191 61 0 29 chr5 106887556 106887590 -45649669 + (CCCCCG)n Simple_repeat Simple_repeat 5 37 0 6 1400 570 15 0 0 chr5 106888840 106888907 -45648352 + (TTTTC)n Simple_repeat Simple_repeat 5 71 0 6 1400 405 0 0 0 chr5 106889951 106889996 -45647263 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1400 722 148 38 2 chr5 106890414 106890548 -45646711 + B1_Mus2 SINE Alu 5 144 -3 6 1400 222 150 0 0 chr5 106890714 106890754 -45646505 + (TTG)n Simple_repeat Simple_repeat 1 40 0 6 1400 216 97 0 0 chr5 106891350 106891381 -45645878 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1400 396 0 0 0 chr5 106894154 106894198 -45643061 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1400 244 229 23 35 chr5 106897859 106897945 -45639314 + G-rich Low_complexity Low_complexity 5 89 0 6 1400 21 0 0 0 chr5 106898515 106898536 -45638723 + AT_rich Low_complexity Low_complexity 1 21 0 6 1400 204 125 0 0 chr5 106899493 106899525 -45637734 + (A)n Simple_repeat Simple_repeat 1 32 0 6 1400 227 56 56 0 chr5 106900142 106900178 -45637081 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 6 1400 348 127 0 0 chr5 106902082 106902137 -45635122 + (T)n Simple_repeat Simple_repeat 1 55 0 6 1400 404 168 6 17 chr5 106902263 106902348 -45634911 + RSINE1 SINE B4 7 87 -205 6 1400 657 230 106 6 chr5 106903334 106903513 -45633746 - B3A SINE B2 -1 197 1 6 1400 203 158 0 0 chr5 106903529 106903567 -45633692 + CT-rich Low_complexity Low_complexity 1 38 0 6 1400 252 0 0 0 chr5 106903567 106903595 -45633664 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1400 359 319 21 0 chr5 106903595 106903689 -45633570 - RSINE1 SINE B4 -20 145 50 6 1400 549 0 0 0 chr5 106904127 106904188 -45633071 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1400 314 222 173 0 chr5 106906009 106906090 -45631169 + PB1D10 SINE Alu 23 117 0 6 1400 225 0 0 0 chr5 106906271 106906296 -45630963 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1400 333 0 0 0 chr5 106906542 106906579 -45630680 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1400 405 306 91 91 chr5 106906745 106906922 -45630337 + B4A SINE B4 2 188 -104 6 1400 596 173 76 38 chr5 106906922 106907054 -45630205 + B1_Mur3 SINE Alu 5 141 -8 6 1400 561 15 0 0 chr5 106907055 106907121 -45630138 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1400 405 306 91 91 chr5 106907121 106907228 -45630031 + B4A SINE B4 189 288 -4 6 1400 320 259 7 0 chr5 106907252 106907387 -45629872 + (CA)n Simple_repeat Simple_repeat 1 136 0 6 1400 241 288 96 56 chr5 106907454 106907579 -45629680 + MIRm SINE MIR 30 159 -117 6 1400 251 361 37 9 chr5 106907648 106907757 -45629502 - L3 LINE CR1 -421 4068 3957 6 1400 229 242 30 15 chr5 106908430 106908497 -45628762 + (TGGA)n Simple_repeat Simple_repeat 4 71 0 6 1400 524 145 25 8 chr5 106908516 106908634 -45628625 + (TAGA)n Simple_repeat Simple_repeat 1 120 0 6 1400 241 319 14 0 chr5 106909298 106909370 -45627889 - PB1 SINE Alu -26 101 29 6 1400 515 320 52 13 chr5 106910095 106910250 -45627009 - RSINE1 SINE B4 -2 163 3 6 1400 183 387 13 0 chr5 106910322 106910397 -45626862 + MIR SINE MIR 117 192 -70 6 1400 261 0 0 0 chr5 106910517 106910546 -45626713 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1400 690 48 29 0 chr5 106910546 106910648 -45626611 + (GA)n Simple_repeat Simple_repeat 1 106 0 6 1400 1595 260 71 23 chr5 106911248 106911772 -45625487 - Zaphod DNA Tip100 -10 4021 3473 6 1400 841 267 29 0 chr5 106911783 106911993 -45625266 - B3 SINE B2 0 216 1 6 1400 210 37 0 0 chr5 106912012 106912039 -45625220 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1400 341 261 63 32 chr5 106912061 106912156 -45625103 - HAL1-3A_ME LINE L1 -786 2072 1975 6 1400 456 250 34 27 chr5 106912271 106912419 -45624840 - B1F SINE Alu 0 149 1 6 1400 236 215 44 44 chr5 106912501 106912569 -45624690 + PB1D10 SINE Alu 8 75 -42 6 1400 355 245 32 0 chr5 106912604 106912698 -45624561 + ID_B1 SINE B4 128 224 0 6 1400 213 305 33 17 chr5 106912738 106912798 -45624461 + ID SINE ID 13 73 -151 6 1400 680 331 134 56 chr5 106912841 106913356 -45623903 - Zaphod DNA Tip100 -1069 2962 2408 6 1400 227 296 18 36 chr5 106913343 106913455 -45623804 - Zaphod DNA Tip100 -3246 785 676 6 1400 3327 45 2 15 chr5 106913495 106913898 -45623361 + MTB LTR MaLR 1 398 -2 6 1400 667 315 40 27 chr5 106913999 106914224 -45623035 - Zaphod DNA Tip100 -3529 502 275 6 1400 378 57 0 0 chr5 106914276 106914329 -45622930 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1400 333 0 0 0 chr5 106914329 106914366 -45622893 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1400 762 167 0 0 chr5 106915024 106915326 -45621933 + (TG)n Simple_repeat Simple_repeat 1 302 0 6 1400 216 0 0 0 chr5 106915326 106915349 -45621910 + (GA)n Simple_repeat Simple_repeat 1 24 0 6 1400 292 250 25 50 chr5 106915381 106915461 -45621798 - RSINE1 SINE B4 -30 135 58 6 1400 26 0 0 0 chr5 106915681 106915707 -45621552 + AT_rich Low_complexity Low_complexity 1 26 0 6 1400 306 167 15 0 chr5 106915712 106915778 -45621481 - Lx9 LINE L1 0 7644 7578 6 1400 405 0 0 0 chr5 106915843 106915888 -45621371 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 6 1400 291 294 12 128 chr5 106916438 106916602 -45620657 - MLT1A1 LTR MaLR -263 145 1 6 1400 1754 156 82 9 chr5 106917298 106917386 -45619873 - ORR1D1 LTR MaLR -34 340 230 6 1400 222 118 0 0 chr5 106917386 106917420 -45619839 + (CAGG)n Simple_repeat Simple_repeat 1 34 0 6 1400 1754 156 82 9 chr5 106917420 106917648 -45619611 - ORR1D1 LTR MaLR -145 229 2 6 1400 344 325 17 42 chr5 106917648 106917741 -45619518 - MTEa LTR MaLR -289 90 1 6 1400 599 222 30 36 chr5 106917899 106918095 -45619164 + B3 SINE B2 1 193 -2 6 1400 282 325 34 63 chr5 106919258 106919299 -45617960 - B4 SINE B4 -53 239 134 6 1400 486 248 9 17 chr5 106919299 106919414 -45617845 - B1F2 SINE Alu -33 116 3 6 1400 282 325 34 63 chr5 106919414 106919435 -45617824 - B4 SINE B4 -53 133 74 6 1400 266 347 170 1 chr5 106919502 106919704 -45617555 + MIR SINE MIR 1 228 -34 6 1400 236 222 95 0 chr5 106919718 106919781 -45617478 + ORR1E LTR MaLR 1 69 -290 6 1400 302 287 63 84 chr5 106919855 106920022 -45617237 + ORR1E LTR MaLR 76 241 -118 6 1400 3334 55 2 0 chr5 106920022 106920421 -45616838 - MTB LTR MaLR 0 400 1 6 1400 302 247 149 45 chr5 106920421 106920553 -45616706 + ORR1E LTR MaLR 238 379 0 6 1400 23 33 0 0 chr5 106921220 106921250 -45616009 + AT_rich Low_complexity Low_complexity 1 30 0 6 1400 264 30 0 0 chr5 106922540 106922573 -45614686 + (TTG)n Simple_repeat Simple_repeat 2 34 0 6 1400 366 23 0 0 chr5 106922692 106922735 -45614524 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1400 678 224 59 0 chr5 106922994 106923146 -45614113 - RSINE1 SINE B4 -2 163 3 6 1400 920 167 0 0 chr5 106923629 106923773 -45613486 + B1_Mur4 SINE Alu 5 148 -2 6 1400 186 103 0 0 chr5 106925209 106925238 -45612021 + (TCTCCC)n Simple_repeat Simple_repeat 2 30 0 6 1400 396 0 0 0 chr5 106925681 106925725 -45611534 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1400 539 347 45 5 chr5 106925743 106925963 -45611296 - B4A SINE B4 -58 234 6 6 1400 244 242 45 15 chr5 106925973 106926040 -45611219 - MER5A1 DNA MER1_type -35 131 63 6 1400 863 179 0 7 chr5 106926069 106926210 -45611049 - B1_Mur1 SINE Alu -1 148 9 7 1400 259 209 0 0 chr5 106926404 106926447 -45610812 - RSINE1 SINE B4 -35 130 88 7 1400 1424 62 15 25 chr5 106926483 106926680 -45610579 - B2_Mm2 SINE B2 0 195 1 7 1400 408 190 12 12 chr5 106926680 106926760 -45610499 - RSINE1 SINE B4 -66 99 20 7 1400 740 131 0 0 chr5 106927410 106927517 -45609742 + B3 SINE B2 2 108 -108 7 1400 199 261 0 0 chr5 106927661 106927707 -45609552 + MIR SINE MIR 99 144 -118 7 1400 867 278 38 4 chr5 106928176 106928440 -45608819 - L1MB3 LINE L1 -245 5938 5666 7 1400 313 276 198 12 chr5 106928908 106929080 -45608179 - L1MB3 LINE L1 -143 6040 5837 7 1400 23 0 0 0 chr5 106931662 106931685 -45605574 + GC_rich Low_complexity Low_complexity 1 23 0 7 1400 354 233 74 41 chr5 106932758 106932879 -45604380 + Charlie1 DNA MER1_type 93 217 -2564 7 1400 843 300 153 42 chr5 106932885 106933316 -45603943 + Tigger7 DNA MER2_type 24 502 -1989 7 1400 549 189 28 83 chr5 106933384 106933528 -45603731 + Charlie1 DNA MER1_type 2644 2779 -2 7 1400 656 226 44 0 chr5 106933869 106934006 -45603253 - B3A SINE B2 -54 144 2 7 1400 243 0 0 0 chr5 106934260 106934287 -45602972 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 7 1400 1135 101 0 19 chr5 106934288 106934449 -45602810 - B2_Mm2 SINE B2 -31 164 7 7 1400 360 0 0 0 chr5 106934454 106934494 -45602765 + (TTA)n Simple_repeat Simple_repeat 3 42 0 7 1400 902 232 19 19 chr5 106934494 106934701 -45602558 - B3 SINE B2 -9 207 1 7 1400 186 128 0 0 chr5 106935794 106935833 -45601426 + (A)n Simple_repeat Simple_repeat 1 39 0 7 1400 298 170 19 0 chr5 106935948 106936001 -45601258 + PB1 SINE Alu 45 98 -29 7 1400 188 396 42 17 chr5 106936261 106936379 -45600880 - MIR SINE MIR -104 158 38 7 1400 198 0 0 0 chr5 106936431 106936453 -45600806 + (TC)n Simple_repeat Simple_repeat 2 23 0 7 1400 246 319 43 36 chr5 106936555 106936695 -45600564 + L1MC LINE L1 5709 5849 -2033 7 1400 233 151 19 0 chr5 106937290 106937343 -45599916 + (CCA)n Simple_repeat Simple_repeat 3 56 0 7 1400 1277 98 11 26 chr5 106938596 106938785 -45598474 + B2_Mm1t SINE B2 1 186 -7 7 1400 568 313 127 54 chr5 106938814 106938830 -45598429 - B4A SINE B4 -6 286 272 7 1400 327 49 0 0 chr5 106938830 106938871 -45598388 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1400 568 313 127 54 chr5 106938871 106939114 -45598145 - B4A SINE B4 -21 271 8 7 1400 300 359 122 21 chr5 106939411 106939698 -45597561 - L2a LINE L2 -193 3233 2918 7 1400 207 337 64 64 chr5 106940150 106940337 -45596922 - MIRb SINE MIR -54 214 28 7 1400 342 45 0 0 chr5 106940972 106941016 -45596243 + (T)n Simple_repeat Simple_repeat 1 44 0 7 1400 1042 258 24 37 chr5 106941139 106941433 -45595826 + B4A SINE B4 1 290 -2 7 1400 567 211 0 0 chr5 106941440 106941601 -45595658 + (CA)n Simple_repeat Simple_repeat 2 162 0 7 1400 628 270 0 35 chr5 106942106 106942275 -45594984 + RSINE1 SINE B4 3 165 0 7 1400 1038 176 91 14 chr5 106942487 106942636 -45594623 + URR1B DNA MER1_type 1 155 -70 7 1400 1148 52 0 0 chr5 106942636 106942772 -45594487 + B1_Mus1 SINE Alu 2 137 -11 7 1400 213 39 0 0 chr5 106942773 106942799 -45594460 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 7 1400 1038 176 91 14 chr5 106942799 106942855 -45594404 + URR1B DNA MER1_type 156 222 -3 7 1400 914 159 18 24 chr5 106942861 106943029 -45594230 + B2_Mm2 SINE B2 2 168 -27 7 1400 288 284 0 0 chr5 106943035 106943130 -45594129 + GA-rich Low_complexity Low_complexity 3 97 0 7 1400 518 309 55 6 chr5 106943497 106943660 -45593599 + RMER15 LTR ERVL 396 566 -9 7 1400 554 227 0 0 chr5 106944174 106944271 -45592988 - PB1D10 SINE Alu -13 104 8 7 1400 281 304 32 73 chr5 106944217 106944341 -45592918 - B4A SINE B4 -146 146 28 7 1400 238 339 51 17 chr5 106944351 106944468 -45592791 - MIR SINE MIR -65 143 23 7 1400 422 250 48 39 chr5 106944778 106944882 -45592377 - ID_B1 SINE B4 -29 195 91 7 1400 1150 133 50 0 chr5 106944950 106945130 -45592129 - B2_Mm2 SINE B2 -5 190 2 7 1400 192 77 0 0 chr5 106945296 106945322 -45591937 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1400 468 116 0 0 chr5 106945335 106945421 -45591838 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 7 1400 221 200 14 110 chr5 106945648 106945721 -45591538 - B1_Mus1 SINE Alu -77 71 6 7 1400 1035 238 147 51 chr5 106945800 106946154 -45591105 - MTD LTR MaLR -14 405 18 7 1400 202 167 43 43 chr5 106947470 106947564 -45589695 + GA-rich Low_complexity Low_complexity 2 95 0 7 1400 323 282 189 26 chr5 106947567 106947720 -45589539 - MLT1H LTR MaLR -322 227 50 7 1400 1133 111 0 11 chr5 106948632 106948814 -45588445 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7 1400 461 115 13 0 chr5 106948824 106948902 -45588357 + (GA)n Simple_repeat Simple_repeat 1 79 0 7 1400 352 222 247 33 chr5 106949437 106949619 -45587640 - ID_B1 SINE B4 -2 222 2 7 1400 243 61 0 0 chr5 106950091 106950124 -45587135 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1400 207 0 0 0 chr5 106950303 106950326 -45586933 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1400 555 90 0 0 chr5 106950494 106950572 -45586687 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 7 1400 388 300 44 57 chr5 106950572 106950731 -45586528 - RSINE1 SINE B4 -5 160 4 7 1400 24 0 0 0 chr5 106952571 106952595 -45584664 + AT_rich Low_complexity Low_complexity 1 24 0 7 1400 1212 106 0 0 chr5 106953019 106953198 -45584061 + (GGA)n Simple_repeat Simple_repeat 2 180 0 7 1400 628 172 17 11 chr5 106953425 106953601 -45583658 + CT-rich Low_complexity Low_complexity 1 177 0 7 1400 759 167 126 166 chr5 106953608 106953831 -45583428 - B3 SINE B2 0 216 3 7 1400 3380 88 17 4 chr5 106953845 106954312 -45582947 - L1_Mus4 LINE L1 0 6636 6164 7 1401 621 271 47 28 chr5 106955587 106955800 -45581459 + ID_B1 SINE B4 5 221 -3 7 1401 474 133 41 0 chr5 106955800 106955898 -45581361 + GA-rich Low_complexity Low_complexity 1 102 0 7 1401 506 296 120 0 chr5 106958169 106958311 -45578948 + RSINE1 SINE B4 1 159 -6 7 1401 450 0 0 0 chr5 106958312 106958362 -45578897 + (TTTTA)n Simple_repeat Simple_repeat 4 53 0 7 1401 669 192 30 8 chr5 106958374 106958505 -45578754 - B1_Mur3 SINE Alu -10 139 6 7 1401 891 304 128 8 chr5 106958741 106959216 -45578043 - L1MC1 LINE L1 0 6508 5977 7 1401 296 223 20 59 chr5 106959217 106959319 -45577940 - BC1_Mm scRNA scRNA -52 100 3 7 1401 928 299 56 11 chr5 106959380 106959735 -45577524 - L1MC1 LINE L1 -543 5965 5595 7 1401 344 194 15 0 chr5 106959736 106959803 -45577456 - MER73 LTR ERVL -481 163 96 7 1401 439 269 0 0 chr5 106959834 106959927 -45577332 - BC1_Mm scRNA scRNA -57 95 3 7 1401 414 198 30 1 chr5 106959928 106960023 -45577236 - B1F SINE Alu -7 142 24 7 1401 658 260 225 27 chr5 106960037 106960623 -45576636 - L1MC1 LINE L1 -1121 5200 4499 7 1401 1595 297 44 5 chr5 106960682 106961118 -45576141 + RCHARR1 DNA MER1_type 9 461 -513 7 1401 867 203 96 5 chr5 106961118 106961326 -45575933 + RCHARR1 DNA MER1_type 748 974 0 7 1401 476 300 194 44 chr5 106961414 106961847 -45575412 - L1MC1 LINE L1 -5446 1062 565 7 1401 270 0 0 0 chr5 106962003 106962033 -45575226 + (TTG)n Simple_repeat Simple_repeat 2 31 0 7 1401 370 310 110 35 chr5 106962155 106962409 -45574850 - L1MC1 LINE L1 -6193 315 43 7 1401 1310 65 6 0 chr5 106962411 106962567 -45574692 + B2_Mm2 SINE B2 2 157 -38 7 1401 318 26 0 0 chr5 106962567 106962606 -45574653 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 7 1401 1310 65 6 0 chr5 106962606 106962619 -45574640 + B2_Mm2 SINE B2 158 171 -24 7 1401 1478 210 57 6 chr5 106962777 106963093 -45574166 + ORR1D2 LTR MaLR 8 339 -31 7 1401 216 0 0 0 chr5 106963093 106963117 -45574142 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 7 1401 3157 124 41 2 chr5 106963117 106963608 -45573651 - Lx4A LINE L1 -4 7054 6545 7 1401 1467 122 0 0 chr5 106963608 106963805 -45573454 + Lx4A LINE L1 6340 6536 -522 7 1401 486 209 12 0 chr5 106964058 106964144 -45573115 + MTD LTR MaLR 203 289 -130 7 1401 210 71 0 0 chr5 106964222 106964250 -45573009 + (CAA)n Simple_repeat Simple_repeat 3 30 0 7 1401 397 298 33 16 chr5 106964545 106964725 -45572534 - MLT1H LTR MaLR -304 185 39 7 1401 2544 130 52 5 chr5 106964725 106965127 -45572132 + MTC LTR MaLR 1 421 0 7 1401 222 253 59 24 chr5 106965230 106965315 -45571944 + MIR SINE MIR 150 237 -25 7 1401 549 0 0 0 chr5 106966711 106966772 -45570487 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1401 320 237 26 13 chr5 106967818 106967895 -45569364 + B4 SINE B4 1 78 -214 7 1401 599 208 45 72 chr5 106967911 106968108 -45569151 + B3 SINE B2 2 194 -1 7 1401 479 292 158 27 chr5 106968118 106968233 -45569026 + B4 SINE B4 82 209 -83 7 1401 360 0 0 0 chr5 106968233 106968273 -45568986 + (TC)n Simple_repeat Simple_repeat 1 40 0 7 1401 450 0 0 0 chr5 106968273 106968322 -45568937 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1401 479 292 158 27 chr5 106968322 106968388 -45568871 + B4 SINE B4 210 287 -5 7 1401 279 0 0 0 chr5 106968697 106968728 -45568531 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1401 315 0 0 0 chr5 106968728 106968762 -45568497 + (TATG)n Simple_repeat Simple_repeat 1 35 0 7 1401 2713 142 71 8 chr5 106968763 106969240 -45568019 + RMER20A LTR ERVK 6 512 -4 7 1401 369 0 0 0 chr5 106969240 106969281 -45567978 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1401 857 224 30 40 chr5 106970062 106970262 -45566997 + B3A SINE B2 1 198 0 7 1401 27 0 0 0 chr5 106970993 106971020 -45566239 + AT_rich Low_complexity Low_complexity 1 27 0 7 1401 1222 256 7 11 chr5 106972359 106972643 -45564616 + B4A SINE B4 2 284 -8 7 1401 447 19 0 0 chr5 106972690 106972742 -45564517 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 7 1401 249 33 0 0 chr5 106972746 106972776 -45564483 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 7 1401 1000 275 64 53 chr5 106972873 106973215 -45564044 - MLT2B1 LTR ERVL -165 355 10 7 1401 232 286 29 0 chr5 106973490 106973560 -45563699 + ID4 SINE ID 1 72 -11 7 1401 212 306 33 66 chr5 106973560 106973581 -45563678 + ID SINE ID 1 88 -136 7 1401 587 290 47 0 chr5 106973974 106974143 -45563116 + B3 SINE B2 2 178 -38 7 1401 1136 197 29 16 chr5 106974486 106974619 -45562640 - MTC LTR MaLR 0 421 287 7 1401 3386 47 5 15 chr5 106974619 106975030 -45562229 + MTB_Mm LTR MaLR 1 407 0 8 1401 1136 197 29 16 chr5 106975030 106975139 -45562120 - MTC LTR MaLR -135 286 176 7 1401 262 182 18 35 chr5 106975192 106975249 -45562010 - MTC LTR MaLR -365 56 1 7 1401 264 122 0 0 chr5 106977307 106977348 -45559911 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1401 1123 141 6 0 chr5 106978234 106978404 -45558855 + B2_Mm1t SINE B2 1 171 -22 8 1401 368 76 28 21 chr5 106978455 106978567 -45558692 + B2_Mm2 SINE B2 47 195 0 8 1401 1384 246 89 72 chr5 106978770 106979295 -45557964 + RLTR20C LTR ERVK 1 534 0 8 1401 3028 59 49 3 chr5 106980339 106980728 -45556531 - MTB_Mm LTR MaLR 0 407 1 8 1401 511 252 71 31 chr5 106982115 106982227 -45555032 + RSINE1 SINE B4 8 125 -40 8 1401 400 67 26 26 chr5 106982227 106982304 -45554955 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 8 1401 511 252 71 31 chr5 106982304 106982318 -45554941 + RSINE1 SINE B4 126 139 -26 8 1401 828 147 12 0 chr5 106982773 106982915 -45554344 - B2_Mm2 SINE B2 -42 156 2 8 1401 223 264 147 28 chr5 106982916 106983025 -45554234 - MIRb SINE MIR -112 156 35 8 1401 637 179 9 0 chr5 106983154 106983266 -45553993 + B1_Mus1 SINE Alu 10 122 -26 8 1401 24 0 0 0 chr5 106984110 106984134 -45553125 + AT_rich Low_complexity Low_complexity 1 24 0 8 1401 257 266 9 105 chr5 106985885 106985990 -45551269 + PB1D7 SINE Alu 11 105 -15 8 1401 420 20 0 0 chr5 106991142 106991191 -45546068 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 8 1401 328 105 12 62 chr5 106991191 106991272 -45545987 + CT-rich Low_complexity Low_complexity 1 77 0 8 1401 831 64 0 0 chr5 106994817 106994927 -45542332 + (CAGAGA)n Simple_repeat Simple_repeat 4 113 0 8 1401 231 325 50 4 chr5 106997868 106997963 -45539296 - MIR SINE MIR -73 195 91 8 1401 1046 208 40 0 chr5 106997963 106998165 -45539094 + B3 SINE B2 2 211 -5 8 1401 234 174 0 0 chr5 106998165 106998211 -45539048 + (CAGA)n Simple_repeat Simple_repeat 3 48 0 8 1401 260 49 49 0 chr5 106998694 106998735 -45538524 + (TTTTTG)n Simple_repeat Simple_repeat 5 47 0 8 1401 493 285 92 8 chr5 106998736 106998867 -45538392 - ID_B1 SINE B4 -2 222 81 8 1401 1302 181 21 146 chr5 107000285 107000456 -45536803 + ORR1D1 LTR MaLR 41 186 -188 1 1401 360 0 0 0 chr5 107000456 107000496 -45536763 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1401 1302 181 21 146 chr5 107000496 107000700 -45536559 + ORR1D1 LTR MaLR 187 369 -5 1 1401 21 0 0 0 chr5 107001265 107001286 -45535973 + AT_rich Low_complexity Low_complexity 1 21 0 3 1401 472 195 187 0 chr5 107001416 107001539 -45535720 - B1_Mur2 SINE Alu -2 147 2 4 1401 245 248 55 73 chr5 107001447 107001556 -45535703 - MT2B LTR ERVL -343 258 152 5 1401 243 271 85 0 chr5 107001656 107001774 -45535485 - MARNA DNA Mariner -62 524 397 6 1401 232 331 161 7 chr5 107005255 107005392 -45531867 - MIRb SINE MIR -36 232 75 7 1401 210 281 18 0 chr5 107005847 107005904 -45531355 - B1F2 SINE Alu -71 78 21 8 1401 31 26 0 0 chr5 107005904 107005942 -45531317 + AT_rich Low_complexity Low_complexity 1 38 0 9 1401 339 217 58 50 chr5 107006015 107006136 -45531123 + B1F SINE Alu 1 122 -27 1 1401 22 56 0 0 chr5 107006910 107006946 -45530313 + AT_rich Low_complexity Low_complexity 1 36 0 1 1401 879 139 51 17 chr5 107007579 107007755 -45529504 + URR1A DNA MER1_type 45 226 0 1 1401 939 150 0 0 chr5 107007895 107007974 -45529285 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 1401 2432 88 22 0 chr5 107007974 107008294 -45528965 + ORR1A2 LTR MaLR 1 327 0 1 1401 939 150 0 0 chr5 107008294 107008394 -45528865 + (CA)n Simple_repeat Simple_repeat 2 101 0 1 1401 441 184 0 0 chr5 107008405 107008514 -45528745 + (CA)n Simple_repeat Simple_repeat 1 109 0 1 1401 998 240 179 0 chr5 107008515 107008828 -45528431 + ORR1D2 LTR MaLR 2 370 0 1 1401 311 300 0 11 chr5 107009276 107009367 -45527892 - B4A SINE B4 -39 253 164 1 1401 744 213 86 0 chr5 107009377 107009551 -45527708 + B3 SINE B2 28 216 0 1 1401 522 284 44 25 chr5 107009584 107009743 -45527516 - B4A SINE B4 -127 165 4 1 1401 259 276 65 13 chr5 107010530 107010607 -45526652 - ID4 SINE ID -2 81 1 1 1401 697 195 61 66 chr5 107010873 107011054 -45526205 + B3 SINE B2 37 216 0 2 1401 316 217 0 0 chr5 107012810 107012879 -45524380 + L1M4 LINE L1 2721 2789 -3357 2 1401 441 294 91 30 chr5 107013031 107013196 -45524063 + ID_B1 SINE B4 1 175 -49 2 1401 318 219 195 58 chr5 107013292 107013466 -45523793 - B3A SINE B2 0 198 1 2 1401 362 217 9 0 chr5 107013874 107013989 -45523270 + (TG)n Simple_repeat Simple_repeat 2 117 0 2 1401 264 258 56 40 chr5 107014451 107014576 -45522683 - L1M4 LINE L1 -580 6458 6332 2 1401 414 0 0 0 chr5 107014596 107014642 -45522617 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1401 508 167 21 0 chr5 107014678 107014774 -45522485 - RSINE1 SINE B4 -53 112 15 2 1401 400 224 25 10 chr5 107014943 107015074 -45522185 - L1M4 LINE L1 -2528 4478 4339 2 1401 803 197 79 22 chr5 107015502 107015716 -45521543 - L1M4 LINE L1 -3257 3749 3518 2 1401 748 204 0 0 chr5 107015719 107015861 -45521398 - B1_Mur1 SINE Alu -7 142 1 2 1401 661 274 111 36 chr5 107015865 107016172 -45521087 - L1M4 LINE L1 -3483 3523 3194 2 1401 2044 143 78 113 chr5 107016181 107016669 -45520590 - RMER4B LTR ERVK -1 584 114 2 1401 253 256 70 0 chr5 107016780 107016866 -45520393 - L1M4 LINE L1 -4919 2415 2324 2 1401 902 184 73 19 chr5 107016866 107017071 -45520188 - B3 SINE B2 0 216 1 3 1401 502 241 20 81 chr5 107017071 107017220 -45520039 - B3A SINE B2 -2 196 57 3 1401 253 225 99 12 chr5 107017265 107017346 -45519913 - L1M4 LINE L1 -5134 2200 2113 2 1401 779 225 172 51 chr5 107017809 107018221 -45519038 - L1M4 LINE L1 -5026 1878 1417 2 1401 489 176 26 21 chr5 107018508 107018613 -45518646 + B3 SINE B2 6 113 -103 3 1401 550 215 107 7 chr5 107018675 107018825 -45518434 - MTE2b LTR MaLR -6 373 209 3 1401 752 201 184 40 chr5 107018934 107019157 -45518102 - MTE2b LTR MaLR -124 255 1 3 1401 302 304 97 84 chr5 107019157 107019358 -45517901 + MLT1G1-int LTR MaLR 985 1188 -301 3 1401 697 313 127 26 chr5 107019596 107020022 -45517237 + MLT1G1 LTR MaLR 111 579 0 3 1401 645 188 88 0 chr5 107020024 107020194 -45517065 - L1M5 LINE L1 -726 5438 5254 3 1401 558 79 0 0 chr5 107020248 107020324 -45516935 + (TCC)n Simple_repeat Simple_repeat 3 78 0 3 1401 240 276 130 13 chr5 107020328 107020405 -45516854 - PB1D10 SINE Alu -14 103 18 3 1401 667 242 51 25 chr5 107020528 107020901 -45516358 - L1MA6 LINE L1 -1637 6059 5675 3 1401 949 288 114 36 chr5 107020928 107021292 -45515967 + MTE2a LTR MaLR 25 405 -14 3 1401 246 95 0 0 chr5 107021390 107021432 -45515827 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1401 369 0 0 0 chr5 107021432 107021473 -45515786 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1401 845 296 95 10 chr5 107021486 107021896 -45515363 - L1MA6 LINE L1 -396 5484 5040 3 1401 421 221 28 28 chr5 107022843 107022950 -45514309 + MTEa LTR MaLR 258 364 -15 4 1401 343 223 291 9 chr5 107023172 107023382 -45513877 + B4A SINE B4 2 271 -21 4 1401 387 0 0 0 chr5 107023383 107023426 -45513833 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1401 441 84 0 0 chr5 107023426 107023497 -45513762 + (GA)n Simple_repeat Simple_repeat 1 71 0 4 1401 302 289 22 128 chr5 107023832 107023956 -45513303 - B3 SINE B2 -13 203 89 4 1401 315 0 0 0 chr5 107023956 107023991 -45513268 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1401 444 37 0 0 chr5 107023991 107024044 -45513215 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1401 302 289 22 128 chr5 107024044 107024144 -45513115 - B3 SINE B2 -128 88 3 4 1401 840 217 32 41 chr5 107024840 107025061 -45512198 + MTD LTR MaLR 1 219 -200 4 1401 304 298 12 0 chr5 107025472 107025556 -45511703 - PB1 SINE Alu -2 125 41 5 1401 199 79 26 26 chr5 107026298 107026337 -45510922 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 5 1401 635 305 107 13 chr5 107026344 107026837 -45510422 + Lx9 LINE L1 6813 7495 -149 5 1401 274 273 40 20 chr5 107027287 107027388 -45509871 - L3b LINE CR1 -223 259 157 5 1401 405 58 0 0 chr5 107028049 107028101 -45509158 + (CAGG)n Simple_repeat Simple_repeat 1 52 0 5 1401 554 194 28 0 chr5 107029668 107029776 -45507483 + PB1D9 SINE Alu 1 111 -9 5 1401 225 0 0 0 chr5 107029776 107029801 -45507458 + (CCAA)n Simple_repeat Simple_repeat 2 26 0 5 1401 186 43 0 0 chr5 107030295 107030318 -45506941 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 5 1401 194 272 29 115 chr5 107030777 107030881 -45506378 - L2 LINE L2 -1533 1886 1792 5 1401 289 258 0 0 chr5 107031272 107031338 -45505921 + B3A SINE B2 17 82 -116 5 1401 708 249 52 6 chr5 107031400 107031574 -45505685 - B3A SINE B2 -16 182 1 6 1401 225 0 0 0 chr5 107031811 107031836 -45505423 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1401 310 246 202 8 chr5 107032129 107032248 -45505011 + B1_Mur1 SINE Alu 5 146 -3 6 1401 2110 143 92 13 chr5 107033171 107033561 -45503698 + MTC LTR MaLR 1 421 0 6 1401 349 200 225 11 chr5 107034162 107034344 -45502915 + RLTR15 LTR ERVK 4 224 -135 6 1401 288 273 50 85 chr5 107034438 107034638 -45502621 + RLTR15 LTR ERVK 165 357 -2 6 1401 292 180 0 0 chr5 107035399 107035449 -45501810 + B3A SINE B2 93 142 -56 6 1401 788 279 15 0 chr5 107035854 107036055 -45501204 + B3 SINE B2 1 204 -12 6 1401 252 0 0 0 chr5 107036130 107036158 -45501101 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1401 353 169 158 108 chr5 107036623 107036762 -45500497 - B1_Mur3 SINE Alu -1 148 3 6 1401 373 207 351 0 chr5 107036890 107037001 -45500258 + B1_Mur4 SINE Alu 1 150 0 7 1401 380 178 0 0 chr5 107037037 107037110 -45500149 + B3A SINE B2 1 73 -125 7 1401 2449 82 25 0 chr5 107037112 107037429 -45499830 - ORR1A3 LTR MaLR -1 325 1 7 1401 549 182 30 0 chr5 107038058 107038157 -45499102 + B1_Mus1 SINE Alu 2 103 -45 7 1401 431 143 34 103 chr5 107038157 107038170 -45499089 + MT2B LTR ERVL 168 271 -330 7 1401 233 235 0 0 chr5 107038578 107038629 -45498630 + Lx8 LINE L1 7420 7470 -3 7 1401 332 309 57 6 chr5 107038780 107038956 -45498303 + L1M2 LINE L1 2381 2565 -4284 7 1401 1776 129 7 4 chr5 107040036 107040316 -45496943 - ORR1B1 LTR MaLR -113 281 1 7 1401 3512 138 103 35 chr5 107040308 107041057 -45496202 - ORR1B1-int LTR MaLR -2 1507 708 7 1401 362 258 0 21 chr5 107040992 107041087 -45496172 - B1_Mus2 SINE Alu -22 125 33 7 1401 239 139 23 0 chr5 107041101 107041144 -45496115 - ORR1B1-int LTR MaLR -1465 44 1 7 1401 1865 144 84 6 chr5 107041156 107041511 -45495748 - ORR1B1 LTR MaLR -11 383 1 7 1401 400 320 40 7 chr5 107041730 107041878 -45495381 + RSINE1 SINE B4 5 157 -8 7 1401 195 69 0 0 chr5 107042086 107042115 -45495144 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 8 1401 617 153 43 21 chr5 107042188 107042328 -45494931 + ORR1D1 LTR MaLR 5 147 -227 8 1401 315 0 0 0 chr5 107042328 107042363 -45494896 + (TC)n Simple_repeat Simple_repeat 1 35 0 8 1401 369 131 0 0 chr5 107042364 107042425 -45494834 + (CACG)n Simple_repeat Simple_repeat 1 61 0 8 1401 423 221 94 71 chr5 107042559 107042729 -45494530 + ORR1D1 LTR MaLR 211 384 0 8 1401 593 278 179 17 chr5 107042729 107043025 -45494234 + L1M2 LINE L1 3238 3581 -3264 7 1401 299 316 43 35 chr5 107043038 107043179 -45494080 - B3A SINE B2 -14 184 43 8 1401 198 0 0 0 chr5 107043329 107043351 -45493908 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1401 343 290 124 65 chr5 107043381 107043890 -45493369 + L1M2 LINE L1 3876 4414 -2431 7 1401 940 236 179 38 chr5 107043908 107044272 -45492987 - MTD LTR MaLR -14 405 1 8 1401 317 276 204 55 chr5 107044275 107044658 -45492601 + L1_Mur3 LINE L1 3694 4133 -1747 8 1401 221 305 118 8 chr5 107044670 107044789 -45492470 + RSINE1 SINE B4 9 140 -25 8 1401 244 252 80 45 chr5 107045172 107045284 -45491975 + PB1D10 SINE Alu 1 116 -1 8 1401 249 33 0 0 chr5 107046653 107046683 -45490576 + (TA)n Simple_repeat Simple_repeat 1 30 0 9 1401 1215 165 36 14 chr5 107047578 107047799 -45489460 + URR1A DNA MER1_type 1 226 0 9 1401 896 221 19 29 chr5 107047910 107048115 -45489144 - B3 SINE B2 -13 203 1 9 1401 207 114 0 28 chr5 107050024 107050060 -45487199 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9 1401 329 246 35 43 chr5 107052037 107052152 -45485107 - MLT1A0 LTR MaLR 0 365 252 9 1401 22 56 0 0 chr5 107052332 107052368 -45484891 + AT_rich Low_complexity Low_complexity 1 36 0 9 1401 518 306 88 16 chr5 107053248 107053608 -45483651 - MLT1A0-int LTR MaLR -960 411 5 9 1401 316 297 62 9 chr5 107054420 107054532 -45482727 + MER45A DNA Tip100 57 174 -4 9 1401 288 77 0 0 chr5 107054718 107054757 -45482502 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 9 1401 294 213 53 0 chr5 107054772 107054866 -45482393 - PB1D9 SINE Alu 0 120 22 9 1401 228 111 0 0 chr5 107055710 107055746 -45481513 + (CGTG)n Simple_repeat Simple_repeat 1 36 0 9 1401 983 191 180 8 chr5 107055934 107056281 -45480978 - MTD LTR MaLR -8 411 5 1 1401 22 0 0 0 chr5 107056665 107056687 -45480572 + AT_rich Low_complexity Low_complexity 1 22 0 1 1401 545 205 65 8 chr5 107056795 107056918 -45480341 + B1_Mur2 SINE Alu 1 130 -19 1 1401 288 0 0 0 chr5 107057202 107057234 -45480025 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1401 392 135 0 13 chr5 107057326 107057401 -45479858 + (TCC)n Simple_repeat Simple_repeat 2 75 0 1 1401 229 297 88 26 chr5 107058882 107058996 -45478263 + MER112 DNA MER1_type 9 129 -132 1 1401 418 302 91 105 chr5 107059306 107059602 -45477657 - B4A SINE B4 0 292 1 1 1401 329 93 19 0 chr5 107059776 107059830 -45477429 + (TC)n Simple_repeat Simple_repeat 2 56 0 1 1401 282 346 12 25 chr5 107059841 107059921 -45477338 - Charlie23a DNA MER1_type -254 85 7 1 1401 204 40 0 0 chr5 107063103 107063128 -45474131 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1401 180 0 0 0 chr5 107063431 107063451 -45473808 + (CCTTG)n Simple_repeat Simple_repeat 3 22 0 1 1401 653 171 307 12 chr5 107070537 107070703 -45466556 + B3 SINE B2 2 216 0 1 1401 512 250 44 13 chr5 107072568 107072726 -45464533 - RSINE1 SINE B4 -1 164 2 1 1401 391 274 278 32 chr5 107072845 107073317 -45463942 + Lx8 LINE L1 6735 7322 -151 1 1401 230 125 172 0 chr5 107073321 107073385 -45463874 + Lx8 LINE L1 7383 7457 -16 1 1401 22 35 0 0 chr5 107073393 107073422 -45463837 + AT_rich Low_complexity Low_complexity 1 29 0 1 1401 232 293 78 64 chr5 107073463 107073682 -45463577 + L1M4 LINE L1 4646 4867 -1279 1 1401 337 248 63 42 chr5 107073740 107073757 -45463502 + ID_B1 SINE B4 79 223 0 1 1401 518 177 72 8 chr5 107073757 107073882 -45463377 + B1F2 SINE Alu 17 149 0 1 1401 729 160 80 0 chr5 107074049 107074174 -45463085 + B1_Mur3 SINE Alu 5 139 -10 1 1401 320 294 48 32 chr5 107074283 107074590 -45462669 + L1M4 LINE L1 5332 5644 -536 1 1401 314 355 121 13 chr5 107075123 107075354 -45461905 + MER90 LTR ERV1 315 570 -5 1 1401 345 304 44 18 chr5 107075605 107075719 -45461540 + MLT1A1 LTR MaLR 292 408 0 1 1401 255 260 32 24 chr5 107075728 107075854 -45461405 + L1MEg LINE L1 1672 1798 -4286 1 1401 857 255 80 112 chr5 107075855 107076204 -45461055 + Charlie1b DNA MER1_type 8 345 -178 1 1401 411 73 0 0 chr5 107076747 107076802 -45460457 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1401 473 294 147 0 chr5 107077434 107077570 -45459689 + B3A SINE B2 2 157 -41 1 1401 314 306 114 13 chr5 107077906 107078055 -45459204 + L1ME3A LINE L1 5967 6130 -43 1 1401 231 61 0 0 chr5 107079090 107079123 -45458136 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1401 571 352 28 12 chr5 107079152 107079399 -45457860 - MLT1B LTR MaLR -139 251 1 1 1401 22 0 0 0 chr5 107079474 107079496 -45457763 + AT_rich Low_complexity Low_complexity 1 22 0 1 1401 963 156 304 30 chr5 107079910 107080271 -45456988 + MYSERV16_I-int LTR ERVK 1867 2326 0 1 1401 1579 205 156 70 chr5 107080275 107080763 -45456496 + RLTR20B3 LTR ERVK 21 550 -27 1 1401 571 311 90 32 chr5 107082523 107082802 -45454457 + MLT1B LTR MaLR 17 311 -79 1 1401 717 182 0 8 chr5 107082941 107083063 -45454196 - B1_Mus2 SINE Alu -20 127 7 1 1401 1059 81 7 0 chr5 107083416 107083552 -45453707 + B1_Mus1 SINE Alu 3 139 -9 1 1401 188 0 74 0 chr5 107083554 107083581 -45453678 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1401 1203 41 0 27 chr5 107083638 107083788 -45453471 + B1_Mm SINE Alu 2 147 0 1 1401 221 38 93 19 chr5 107083788 107083842 -45453417 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 1 1401 2105 114 6 53 chr5 107083951 107084292 -45452967 - ORR1A2 LTR MaLR -2 325 1 1 1401 696 137 126 30 chr5 107084414 107084549 -45452710 - B1_Mur3 SINE Alu 0 149 2 1 1401 738 249 125 66 chr5 107084928 107085333 -45451926 + L1MB2 LINE L1 3908 4333 -1807 1 1401 1344 79 26 0 chr5 107085333 107085523 -45451736 + B2_Mm2 SINE B2 1 195 0 1 1401 738 249 125 66 chr5 107085523 107085710 -45451549 + L1MB2 LINE L1 4334 4545 -1595 1 175 1616 180 170 89 chr5 107085710 107086203 -45451056 - MT2A LTR ERVL 0 533 1 1 1402 738 249 125 66 chr5 107086203 107086306 -45450953 + L1MB2 LINE L1 4546 4645 -1495 1 1402 546 146 424 0 chr5 107086326 107086477 -45450782 + B3 SINE B2 2 216 0 1 1402 339 296 208 0 chr5 107086553 107086712 -45450547 + ID_B1 SINE B4 2 193 -31 1 1402 255 169 25 112 chr5 107086715 107086795 -45450464 + L1MB2 LINE L1 5018 5090 -1050 1 1402 408 222 26 15 chr5 107086874 107087073 -45450186 + L1MB2 LINE L1 5216 5415 -756 1 1402 269 253 49 108 chr5 107087089 107087191 -45450068 + PB1 SINE Alu 30 125 -2 1 1402 525 32 0 0 chr5 107087212 107087275 -45449984 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1402 361 267 183 35 chr5 107087358 107087587 -45449672 + L1MB2 LINE L1 5666 5928 -255 1 1402 727 211 14 7 chr5 107087744 107087887 -45449372 - B1_Mur2 SINE Alu -1 148 5 1 1402 3242 108 51 12 chr5 107087890 107088429 -45448830 + MT2B LTR ERVL 2 593 -8 1 1402 22 35 0 0 chr5 107088523 107088552 -45448707 + AT_rich Low_complexity Low_complexity 1 29 0 1 1402 283 315 159 19 chr5 107088789 107088996 -45448263 - RMER13B LTR ERVK -227 681 446 1 1402 294 284 22 43 chr5 107088965 107089057 -45448202 + B1F2 SINE Alu 60 149 0 1 1402 411 172 138 11 chr5 107089090 107089178 -45448081 + B3 SINE B2 4 103 -113 1 1402 1254 211 102 95 chr5 107089178 107089649 -45447610 + RMER4B LTR ERVK 1 586 -25 1 1402 482 218 16 120 chr5 107089671 107089796 -45447463 + B3 SINE B2 100 211 -5 1 1402 1183 164 40 15 chr5 107089939 107090237 -45447022 - ORR1C1 LTR MaLR -5 379 3 1 1402 222 118 0 0 chr5 107090942 107090976 -45446283 + (CAG)n Simple_repeat Simple_repeat 1 34 0 1 1402 342 272 24 12 chr5 107091360 107091442 -45445817 + B1F SINE Alu 66 148 -1 1 1402 187 51 49 49 chr5 107091442 107091483 -45445776 + (CAAA)n Simple_repeat Simple_repeat 1 41 0 1 1402 258 294 140 11 chr5 107091749 107091842 -45445417 + MIR SINE MIR 19 123 -85 1 1402 347 273 17 43 chr5 107092336 107092451 -45444808 + PB1D7 SINE Alu 1 112 -8 1 1402 1471 168 164 6 chr5 107093644 107093967 -45443292 + ORR1D1 LTR MaLR 1 374 0 1 1402 1136 96 72 17 chr5 107094349 107094530 -45442729 + B2_Mm2 SINE B2 2 192 -3 1 1402 391 256 254 38 chr5 107095096 107095332 -45441927 + B4A SINE B4 2 288 -4 1 1402 816 209 83 5 chr5 107096094 107096286 -45440973 + B3 SINE B2 1 207 -9 1 1402 54 84 0 22 chr5 107096314 107096496 -45440763 + AT_rich Low_complexity Low_complexity 1 178 0 1 1402 735 325 52 46 chr5 107096508 107096834 -45440425 - MER2 DNA MER2_type -17 328 1 1 1402 231 36 0 0 chr5 107097698 107097726 -45439533 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1402 446 167 71 0 chr5 107097729 107097813 -45439446 - PB1D9 SINE Alu -14 106 17 1 1402 270 81 0 0 chr5 107097814 107097851 -45439408 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1402 440 179 71 0 chr5 107097854 107097938 -45439321 - PB1D9 SINE Alu -14 106 17 1 1402 189 0 0 0 chr5 107097939 107097960 -45439299 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1402 487 175 61 10 chr5 107097961 107098059 -45439200 - PB1D9 SINE Alu -1 119 17 1 1402 348 24 0 0 chr5 107098060 107098101 -45439158 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 1402 502 146 60 40 chr5 107098104 107098204 -45439055 - PB1D9 SINE Alu -14 106 5 1 1402 182 242 143 71 chr5 107098669 107098767 -45438492 - MER5A DNA MER1_type -82 107 3 1 1402 230 322 43 11 chr5 107098908 107099002 -45438257 + MLT1D LTR MaLR 1 97 -408 1 1402 1374 76 16 5 chr5 107099239 107099424 -45437835 - B2_Mm2 SINE B2 -8 187 1 1 1402 248 217 68 16 chr5 107099827 107099900 -45437359 - PB1D10 SINE Alu -15 112 28 1 1402 837 191 21 0 chr5 107100541 107100682 -45436577 + B1_Mur3 SINE Alu 6 149 0 1 1402 441 282 140 59 chr5 107100769 107101382 -45435877 - L1MA7 LINE L1 -133 6158 5496 1 1402 388 282 289 4 chr5 107101571 107101841 -45435418 + L1MC3 LINE L1 7345 7691 -94 1 1402 243 229 119 0 chr5 107101919 107102037 -45435222 + L1MB5 LINE L1 2738 2869 -3271 1 1402 619 307 22 22 chr5 107102470 107102659 -45434600 + B3A SINE B2 20 216 0 1 1402 394 102 0 28 chr5 107102661 107102732 -45434527 + (TA)n Simple_repeat Simple_repeat 1 69 0 1 1402 556 283 12 30 chr5 107102801 107102965 -45434294 + ORR1E LTR MaLR 1 161 -198 1 1402 678 195 17 0 chr5 107103121 107103239 -45434020 + B3 SINE B2 1 120 -96 1 1402 411 289 77 39 chr5 107103298 107103615 -45433644 + L1MB5 LINE L1 3611 3948 -2192 1 1402 1263 267 177 16 chr5 107103776 107104697 -45432562 + L1MB5 LINE L1 4000 5068 -1072 1 1402 186 103 0 0 chr5 107104795 107104824 -45432435 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 1 1402 448 306 98 13 chr5 107104839 107105478 -45431781 + L1MB5 LINE L1 5348 6038 -145 1 1402 545 256 145 39 chr5 107105594 107105773 -45431486 + B3A SINE B2 1 198 0 1 1402 399 333 50 54 chr5 107106750 107107029 -45430230 + L1ME1 LINE L1 5847 6124 -55 1 1402 3869 194 105 8 chr5 107107436 107108361 -45428898 + Lx9 LINE L1 6569 7583 -61 1 1402 255 209 31 52 chr5 107108370 107108466 -45428793 + Lx9 LINE L1 7502 7595 -49 1 1402 378 249 110 0 chr5 107108507 107108648 -45428611 + B3 SINE B2 27 189 -9 1 1402 921 129 7 7 chr5 107109211 107109352 -45427907 + B1_Mur3 SINE Alu 9 149 0 1 1402 441 0 0 0 chr5 107109561 107109610 -45427649 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1402 325 346 175 28 chr5 107109758 107110118 -45427141 - HAL1 LINE L1 -584 1923 1511 1 1402 364 191 15 0 chr5 107110232 107110300 -45426959 - ID4 SINE ID -13 70 2 1 1402 261 0 0 0 chr5 107110315 107110344 -45426915 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1402 222 192 19 19 chr5 107111553 107111606 -45425653 - B3A SINE B2 -145 53 1 1 1402 230 267 182 26 chr5 107111988 107112065 -45425194 + B1F SINE Alu 52 140 -9 1 1402 401 123 82 0 chr5 107113381 107113454 -45423805 - B1_Mus2 SINE Alu 0 147 69 1 1402 520 181 229 26 chr5 107113538 107113691 -45423568 + B2_Mm2 SINE B2 2 185 -10 1 1402 244 238 0 87 chr5 107113862 107113931 -45423328 - B4A SINE B4 -98 194 132 2 1402 1392 56 39 0 chr5 107115159 107115337 -45421922 - B2_Mm1t SINE B2 -8 185 1 2 1402 259 25 0 48 chr5 107115945 107115987 -45421272 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 2 1402 26 0 0 0 chr5 107116039 107116065 -45421194 + AT_rich Low_complexity Low_complexity 1 26 0 2 1402 277 228 53 0 chr5 107117246 107117303 -45419956 - B1_Mur4 SINE Alu -66 84 25 2 1402 804 50 0 0 chr5 107117325 107117426 -45419833 + (TG)n Simple_repeat Simple_repeat 2 102 0 2 1402 599 200 26 9 chr5 107117448 107117564 -45419695 - B3A SINE B2 -80 118 1 2 1402 456 291 17 0 chr5 107118366 107118483 -45418776 - B4A SINE B4 -84 208 90 2 1402 232 258 146 0 chr5 107118563 107118652 -45418607 - L1MA8 LINE L1 -59 6232 6131 2 1402 311 200 7 76 chr5 107118825 107118943 -45418316 - B1F SINE Alu 0 149 14 2 1402 1148 82 0 0 chr5 107119021 107119168 -45418091 + B1_Mus2 SINE Alu 1 147 0 2 1402 355 246 118 7 chr5 107119772 107119907 -45417352 + ID_B1 SINE B4 71 220 -4 2 1402 503 274 157 23 chr5 107120242 107120459 -45416800 - B4A SINE B4 -6 286 41 2 1402 386 163 143 0 chr5 107121291 107121389 -45415870 + B1_Mur2 SINE Alu 18 129 -20 2 1402 273 292 103 10 chr5 107121874 107121971 -45415288 - B1F1 SINE Alu -42 107 2 2 1402 1106 41 0 64 chr5 107123655 107123812 -45413447 + B1_Mm SINE Alu 1 147 0 2 1402 228 67 0 0 chr5 107124784 107124814 -45412445 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1402 33 56 0 0 chr5 107125194 107125248 -45412011 + GC_rich Low_complexity Low_complexity 1 54 0 2 1402 25 65 0 0 chr5 107125260 107125306 -45411953 + GC_rich Low_complexity Low_complexity 1 46 0 2 1402 475 274 50 64 chr5 107126950 107127168 -45410091 - B3 SINE B2 -1 215 1 2 1402 559 240 56 0 chr5 107127436 107127561 -45409698 + B1_Mus2 SINE Alu 1 132 -15 2 1402 192 77 0 0 chr5 107127567 107127593 -45409666 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2 1402 411 292 63 63 chr5 107127663 107127892 -45409367 + B4A SINE B4 5 241 -51 2 1402 1486 64 37 0 chr5 107127892 107128080 -45409179 + B2_Mm2 SINE B2 1 195 0 2 1402 411 292 63 63 chr5 107128080 107128120 -45409139 + B4A SINE B4 242 274 -18 2 1402 1152 47 0 57 chr5 107129213 107129370 -45407889 + B1_Mus1 SINE Alu 1 148 0 2 1402 195 69 0 0 chr5 107129469 107129498 -45407761 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1402 441 0 0 0 chr5 107129498 107129546 -45407713 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1402 2146 160 8 60 chr5 107129567 107129966 -45407293 + ORR1C1 LTR MaLR 1 378 0 2 1402 585 0 0 0 chr5 107130138 107130203 -45407056 + (TTC)n Simple_repeat Simple_repeat 2 66 0 2 1402 2909 48 0 0 chr5 107130210 107130561 -45406698 - L1_Mus1 LINE L1 -1 6566 6216 2 1402 1120 58 0 0 chr5 107130684 107130821 -45406438 + B1_Mus2 SINE Alu 1 137 -10 2 1402 1089 44 0 0 chr5 107130821 107130956 -45406303 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 2 1402 617 293 71 0 chr5 107131160 107131358 -45405901 - ID_B1 SINE B4 -2 222 11 2 1402 2404 155 34 12 chr5 107131419 107131830 -45405429 - MTC LTR MaLR 0 421 2 2 1402 4273 171 128 76 chr5 107131831 107131920 -45405339 - MTC-int LTR MaLR 0 1258 1177 2 1402 1310 56 42 53 chr5 107131920 107132109 -45405150 + B2_Mm2 SINE B2 2 188 -7 2 1402 4273 171 128 76 chr5 107132109 107132360 -45404899 - MTC-int LTR MaLR -82 1176 946 2 1402 1062 102 7 0 chr5 107132360 107132507 -45404752 + B1_Mus1 SINE Alu 1 148 0 2 1402 4273 171 128 76 chr5 107132507 107133212 -45404047 - MTC-int LTR MaLR -313 945 154 2 1402 1546 62 0 25 chr5 107133212 107133412 -45403847 - B2_Mm2 SINE B2 0 195 1 2 1402 4273 171 128 76 chr5 107133412 107133556 -45403703 - MTC-int LTR MaLR -1105 153 5 2 1402 783 215 23 1 chr5 107133640 107133851 -45403408 - MT2B LTR ERVL -49 552 237 2 1402 210 303 101 0 chr5 107133927 107133950 -45403309 - B4A SINE B4 -183 109 1 2 1402 298 240 0 13 chr5 107133950 107134026 -45403233 - ID2 SINE ID -8 75 1 2 1402 349 172 21 0 chr5 107134761 107134854 -45402405 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 2 1402 331 256 0 0 chr5 107134986 107135068 -45402191 - L1MA7 LINE L1 -20 6271 6190 2 1402 657 315 61 32 chr5 107135073 107135352 -45401907 + B4A SINE B4 2 288 -4 2 1402 239 233 33 16 chr5 107135304 107135365 -45401894 + B3 SINE B2 112 173 -43 2 1402 280 265 151 54 chr5 107135436 107135675 -45401584 - L1MA7 LINE L1 -155 6145 5884 2 1402 321 303 79 70 chr5 107135738 107135965 -45401294 + ORR1E LTR MaLR 79 307 -52 2 1402 417 276 0 8 chr5 107136351 107136468 -45400791 - PB1D9 SINE Alu 0 120 5 2 1402 420 111 0 0 chr5 107136479 107136551 -45400708 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1402 1010 47 0 0 chr5 107136551 107136680 -45400579 - B1_Mus2 SINE Alu -10 137 9 2 1402 692 309 123 45 chr5 107137145 107137615 -45399644 + Lx8 LINE L1 6780 7286 -187 2 1402 195 184 0 0 chr5 107137767 107137805 -45399454 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2 1402 335 233 105 0 chr5 107137832 107137918 -45399341 - ID_B1 SINE B4 -127 97 3 2 1402 752 243 10 45 chr5 107137938 107138136 -45399123 + B3A SINE B2 1 191 -7 2 1402 2127 108 70 34 chr5 107138824 107139207 -45398052 + RMER10B LTR ERVL 1 397 -1 2 1402 846 158 11 11 chr5 107139342 107139521 -45397738 + GA-rich Low_complexity Low_complexity 2 180 0 2 1402 1060 189 47 0 chr5 107139816 107140028 -45397231 - URR1B DNA MER1_type -3 222 1 2 1402 348 182 15 0 chr5 107140372 107140438 -45396821 + ID4_ SINE ID 5 71 -12 2 1402 256 231 15 30 chr5 107140441 107140508 -45396751 + GA-rich Low_complexity Low_complexity 2 67 0 2 1402 258 176 39 0 chr5 107140529 107140580 -45396679 - PB1 SINE Alu -74 53 1 2 1402 704 238 137 5 chr5 107141381 107141571 -45395688 + B3 SINE B2 1 215 -1 2 1402 530 157 10 0 chr5 107141581 107141683 -45395576 + GA-rich Low_complexity Low_complexity 3 105 0 2 1402 1223 94 0 6 chr5 107141683 107141864 -45395395 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1402 755 252 45 22 chr5 107141900 107142123 -45395136 + B4A SINE B4 1 228 -64 2 1402 201 195 0 0 chr5 107142253 107142294 -45394965 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1402 580 143 21 20 chr5 107142306 107142424 -45394835 + B3 SINE B2 13 131 -67 2 1402 414 280 76 8 chr5 107143574 107143693 -45393566 + RSINE1 SINE B4 3 129 -36 2 1402 22 56 0 0 chr5 107143698 107143734 -45393525 + AT_rich Low_complexity Low_complexity 1 36 0 2 1402 549 159 55 27 chr5 107143858 107143968 -45393291 + B1_Mur4 SINE Alu 38 150 0 2 1402 351 0 0 0 chr5 107143972 107144011 -45393248 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2 1402 324 181 0 0 chr5 107144017 107144089 -45393170 + RMER4B LTR ERVK 513 584 -1 2 1402 7753 71 7 0 chr5 107144193 107145459 -45391800 + L1_Mus1 LINE L1 5295 6567 0 2 1402 317 284 108 0 chr5 107145480 107145582 -45391677 - L2 LINE L2 -1003 2416 2304 2 1402 419 293 99 13 chr5 107146023 107146175 -45391084 - ID_B1 SINE B4 -6 218 54 2 1402 468 0 0 0 chr5 107146673 107146725 -45390534 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1402 1149 64 0 0 chr5 107146726 107146867 -45390392 - B1_Mm SINE Alu -6 141 1 2 1402 491 233 25 0 chr5 107146988 107147108 -45390151 - ID_B1 SINE B4 -9 215 93 2 1402 359 241 73 29 chr5 107147108 107147120 -45390139 - B1_Mur4 SINE Alu -4 141 4 2 1402 391 243 75 0 chr5 107147689 107147796 -45389463 - B4 SINE B4 -69 223 109 2 1402 666 246 23 23 chr5 107147873 107148048 -45389211 + B3A SINE B2 1 175 -23 2 1402 3604 72 13 15 chr5 107148142 107148618 -45388641 - MT2C_Mm LTR ERVL 0 475 1 2 1402 468 139 46 9 chr5 107148669 107148778 -45388481 - Lx9 LINE L1 -2 7642 7530 2 1402 865 110 7 20 chr5 107148891 107149039 -45388220 + URR1A DNA MER1_type 81 226 0 2 1402 299 262 122 0 chr5 107149040 107149147 -45388112 - Lx9 LINE L1 -201 7443 7324 2 1402 1288 194 90 71 chr5 107149143 107149183 -45388076 + Lx9 LINE L1 6610 6635 -1009 2 1402 1249 86 11 6 chr5 107149183 107149358 -45387901 + B2_Mm2 SINE B2 1 176 -19 2 1402 1288 194 90 71 chr5 107149358 107149683 -45387576 + Lx9 LINE L1 6636 6982 -662 2 1402 775 167 0 16 chr5 107149728 107149856 -45387403 - B1_Mus1 SINE Alu -22 126 1 2 1402 624 190 57 7 chr5 107149897 107150032 -45387227 + B1_Mur1 SINE Alu 2 135 -14 2 1402 576 42 0 0 chr5 107150032 107150103 -45387156 + (GAAAA)n Simple_repeat Simple_repeat 5 75 0 2 1402 1374 70 16 16 chr5 107150148 107150337 -45386922 - B2_Mm2 SINE B2 -5 190 2 2 1402 247 326 23 0 chr5 107150347 107150433 -45386826 - L1M4 LINE L1 -1543 4603 4516 2 1402 2525 158 21 11 chr5 107150460 107150934 -45386325 - ORR1A4-int LTR MaLR -1484 479 1 2 1402 1956 142 31 0 chr5 107150936 107151253 -45386006 - ORR1A4 LTR MaLR -2 327 1 2 1402 699 110 8 17 chr5 107151853 107151973 -45385286 - B1_Mur3 SINE Alu -1 148 30 2 1402 960 280 44 14 chr5 107152019 107152312 -45384947 + MTEb LTR MaLR 8 309 -70 2 1402 351 113 0 0 chr5 107152460 107152513 -45384746 + (GGA)n Simple_repeat Simple_repeat 1 53 0 2 1402 1446 70 16 0 chr5 107152819 107153006 -45384253 + B2_Mm1a SINE B2 1 190 -3 2 1402 683 276 161 11 chr5 107153360 107153627 -45383632 - Tigger7 DNA MER2_type -2078 413 107 2 1402 231 294 71 59 chr5 107154000 107154174 -45383085 + MIRb SINE MIR 30 205 -63 2 1402 347 259 12 0 chr5 107155371 107155456 -45381803 + PB1D10 SINE Alu 3 88 -29 2 1402 330 87 0 0 chr5 107155474 107155520 -45381739 + (CGTG)n Simple_repeat Simple_repeat 3 48 0 2 1402 336 185 31 0 chr5 107155520 107155585 -45381674 - HAL1-3A_ME LINE L1 -846 2012 1946 2 1402 303 288 0 0 chr5 107155632 107155698 -45381561 + B4A SINE B4 221 286 -6 2 1402 931 199 10 39 chr5 107155870 107156074 -45381185 + B3A SINE B2 1 198 0 2 1402 233 369 55 28 chr5 107156100 107156245 -45381014 + RSINE1 SINE B4 3 151 -14 3 1402 794 191 5 7 chr5 107156558 107156971 -45380288 + (TG)n Simple_repeat Simple_repeat 1 411 0 3 1402 621 325 3 75 chr5 107156986 107157279 -45379980 - B4A SINE B4 -17 275 4 3 1402 2944 110 57 0 chr5 107157318 107157808 -45379451 + RLTR28 LTR ERVL 1 518 -6 3 1402 1481 73 0 30 chr5 107158656 107158854 -45378405 - B2_Mm2 SINE B2 -3 192 1 3 1402 1138 42 35 0 chr5 107158887 107159030 -45378229 + B1_Mus1 SINE Alu 1 148 0 3 1402 201 39 0 0 chr5 107159036 107159062 -45378197 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1402 2510 176 2 0 chr5 107159345 107159765 -45377494 + MTC LTR MaLR 1 421 0 3 1402 475 310 34 7 chr5 107159780 107159926 -45377333 + RSINE1 SINE B4 3 152 -13 3 1402 25 31 0 0 chr5 107160183 107160215 -45377044 + AT_rich Low_complexity Low_complexity 1 32 0 3 1402 400 324 144 39 chr5 107160586 107161017 -45376242 + MLT1D LTR MaLR 1 476 -29 3 1402 332 238 20 35 chr5 107161929 107162130 -45375129 + (TG)n Simple_repeat Simple_repeat 1 198 0 3 1402 756 134 11 23 chr5 107162143 107162318 -45374941 + (TG)n Simple_repeat Simple_repeat 1 173 0 3 1402 477 310 104 93 chr5 107163145 107163415 -45373844 + B4 SINE B4 2 274 -18 3 1402 476 107 64 23 chr5 107163453 107163625 -45373634 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1402 545 138 25 29 chr5 107163652 107163901 -45373358 + (CA)n Simple_repeat Simple_repeat 1 247 0 3 1402 459 73 0 0 chr5 107163902 107163970 -45373289 + (TC)n Simple_repeat Simple_repeat 1 68 0 3 1402 263 104 20 40 chr5 107164175 107164225 -45373034 + ORR1C2 LTR MaLR 1 49 -318 3 1402 1614 141 54 48 chr5 107164299 107164612 -45372647 + ORR1C2 LTR MaLR 70 384 0 3 1402 318 239 185 17 chr5 107165016 107165135 -45372124 - RMER15 LTR ERVL -90 485 347 3 1402 365 206 248 61 chr5 107166516 107166689 -45370570 - MTE2a LTR MaLR -9 370 166 3 1402 973 125 224 17 chr5 107166711 107166890 -45370369 - B3 SINE B2 0 216 1 3 1402 312 325 28 28 chr5 107167782 107167928 -45369331 - MTE2a LTR MaLR -242 179 43 3 1402 1225 34 0 20 chr5 107168123 107168274 -45368985 + B1_Mus1 SINE Alu 1 148 0 3 1402 1002 17 0 0 chr5 107168546 107168662 -45368597 + (GAA)n Simple_repeat Simple_repeat 1 116 0 3 1402 403 285 19 77 chr5 107169221 107169377 -45367882 + MLT1B LTR MaLR 244 390 0 3 1402 315 0 0 0 chr5 107169482 107169517 -45367742 + (CCTG)n Simple_repeat Simple_repeat 4 38 0 3 1402 34 0 0 0 chr5 107170872 107170906 -45366353 + AT_rich Low_complexity Low_complexity 1 34 0 3 1402 2050 286 97 21 chr5 107170956 107171609 -45365650 + MER21B LTR ERV1 9 710 -153 3 1402 30 27 0 0 chr5 107172602 107172639 -45364620 + AT_rich Low_complexity Low_complexity 1 37 0 3 1402 324 0 0 0 chr5 107173070 107173106 -45364153 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1402 500 285 15 0 chr5 107173436 107173566 -45363693 + B3A SINE B2 2 133 -65 3 1402 231 36 0 0 chr5 107173574 107173602 -45363657 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 3 1402 326 285 206 21 chr5 107173835 107174068 -45363191 - B4 SINE B4 -16 276 1 3 1402 544 270 75 62 chr5 107174073 107174447 -45362812 - L1ME3 LINE L1 -272 5890 5498 3 1402 1807 188 24 0 chr5 107174460 107174790 -45362469 - MTC LTR MaLR 0 421 84 3 1402 207 100 0 0 chr5 107174795 107174825 -45362434 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1402 829 175 7 0 chr5 107174857 107174994 -45362265 - B1_Mur4 SINE Alu -11 139 2 3 1402 739 214 6 54 chr5 107174994 107175092 -45362167 - MTC LTR MaLR -331 90 1 3 1402 318 329 56 68 chr5 107175125 107175376 -45361883 - L1ME1 LINE L1 -16 6163 5916 3 1402 310 296 255 52 chr5 107175442 107175791 -45361468 - LTR40a LTR ERVL 0 519 100 3 1402 1945 168 32 50 chr5 107175864 107176241 -45361018 - ORR1C1 LTR MaLR -8 370 1 3 1402 22 0 0 0 chr5 107176273 107176295 -45360964 + AT_rich Low_complexity Low_complexity 1 22 0 3 1402 342 194 15 0 chr5 107176310 107176377 -45360882 + ID_B1 SINE B4 157 224 0 3 1402 400 258 73 111 chr5 107176405 107176693 -45360566 - L1ME3 LINE L1 -1465 4681 4405 3 1402 346 148 0 0 chr5 107176715 107176769 -45360490 - B2_Mm2 SINE B2 -94 101 48 3 1402 1181 112 6 12 chr5 107176806 107176977 -45360282 - B2_Mm1t SINE B2 -22 171 2 3 1402 599 238 0 32 chr5 107178160 107178286 -45358973 + B3A SINE B2 1 122 -76 3 1402 378 0 0 0 chr5 107178295 107178337 -45358922 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1402 486 49 0 0 chr5 107178337 107178397 -45358862 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1402 403 259 113 30 chr5 107178408 107178550 -45358709 - B1_Mur1 SINE Alu -17 132 2 3 1402 545 264 115 17 chr5 107178844 107179061 -45358198 - ID_B1 SINE B4 -16 276 41 3 1402 1125 78 0 0 chr5 107179061 107179214 -45358045 + (GAAA)n Simple_repeat Simple_repeat 2 154 0 3 1402 398 333 95 20 chr5 107180186 107180333 -45356926 + Tigger5 DNA MER2_type 2 159 -2247 3 1402 402 312 55 48 chr5 107180336 107180481 -45356778 + Tigger5 DNA MER2_type 2260 2405 -1 3 1402 320 333 0 0 chr5 107180520 107180628 -45356631 - PB1D10 SINE Alu -8 109 2 3 1402 3373 55 2 0 chr5 107181154 107181557 -45355702 - MTB_Mm LTR MaLR -3 404 1 3 1402 820 173 14 22 chr5 107182040 107182414 -45354845 + CT-rich Low_complexity Low_complexity 1 370 0 3 1402 734 264 46 10 chr5 107182424 107182619 -45354640 - ID_B1 SINE B4 -17 207 6 3 1402 206 314 0 0 chr5 107183149 107183200 -45354059 - MIRb SINE MIR -85 183 133 3 1402 871 176 7 0 chr5 107183205 107183353 -45353906 + B1_Mur3 SINE Alu 1 149 0 3 1402 495 63 0 4 chr5 107183414 107183481 -45353778 + L1Md_A LINE L1 5525 5589 -297 3 1402 8985 15 0 0 chr5 107183481 107184477 -45352782 + L1Md_A LINE L1 5587 6582 0 3 1402 243 0 0 0 chr5 107184602 107184629 -45352630 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1402 1175 68 0 0 chr5 107184722 107184868 -45352391 - B1_Mus2 SINE Alu 0 147 2 3 1402 576 282 66 9 chr5 107184994 107185205 -45352054 + ID_B1 SINE B4 1 223 -1 3 1402 191 114 0 28 chr5 107185520 107185556 -45351703 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1402 2015 105 74 30 chr5 107186034 107186427 -45350832 + RMER17C LTR ERVK 1 410 0 3 1402 344 253 241 30 chr5 107187247 107187479 -45349780 + B4A SINE B4 12 292 0 3 1402 198 43 109 0 chr5 107187657 107187703 -45349556 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3 1402 768 163 28 50 chr5 107187714 107187895 -45349364 - Lx3B LINE L1 -1 6972 6796 3 1402 3994 89 43 20 chr5 107187895 107188488 -45348771 - Lx3B LINE L1 -423 6550 5942 3 1402 3220 102 13 13 chr5 107188487 107188858 -45348401 + Lx3B LINE L1 5430 5800 -86 3 1402 1209 55 0 7 chr5 107188858 107189005 -45348254 + B1_Mus1 SINE Alu 1 146 -2 3 1402 3220 98 18 18 chr5 107189005 107189127 -45348132 + Lx3B LINE L1 5798 5919 -1054 3 1402 2505 123 60 12 chr5 107189975 107190377 -45346882 - MTC LTR MaLR 0 421 1 3 1402 332 172 0 0 chr5 107190378 107190442 -45346817 - MTC-int LTR MaLR -1 1257 1194 3 1402 2444 175 181 31 chr5 107190431 107191006 -45346253 + MTC-int LTR MaLR 471 1143 -115 3 1402 857 172 213 0 chr5 107191006 107191180 -45346079 - B3 SINE B2 -4 212 2 3 1402 2444 175 181 31 chr5 107191180 107191216 -45346043 + MTC-int LTR MaLR 1144 1174 -84 3 1402 278 295 50 59 chr5 107191258 107191359 -45345900 - ORR1E LTR MaLR -218 141 42 3 1402 616 88 37 40 chr5 107191383 107191737 -45345522 + (TG)n Simple_repeat Simple_repeat 1 352 0 3 1402 238 216 20 0 chr5 107191779 107191830 -45345429 - RMER15 LTR ERVL -20 555 504 3 1402 1681 184 78 23 chr5 107191844 107192239 -45345020 + RMER10A LTR ERVL 1 417 -25 3 1402 471 271 117 86 chr5 107192194 107192241 -45345018 - RMER15 LTR ERVL -31 544 502 3 1402 254 26 53 0 chr5 107192241 107192279 -45344980 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 3 1402 471 271 117 86 chr5 107192279 107192522 -45344737 - RMER15 LTR ERVL -74 501 245 3 1402 229 289 84 111 chr5 107192541 107192753 -45344506 - L3 LINE CR1 -3529 960 752 3 1402 180 0 0 0 chr5 107192753 107192773 -45344486 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1402 229 289 84 111 chr5 107192773 107192821 -45344438 - L3 LINE CR1 -3738 751 707 3 1402 662 248 6 0 chr5 107193063 107193387 -45343872 + (CA)n Simple_repeat Simple_repeat 1 326 0 3 1402 564 252 8 0 chr5 107193643 107193766 -45343493 - RSINE1 SINE B4 -38 127 4 3 1402 824 200 3 23 chr5 107194623 107194817 -45342442 - B3 SINE B2 -11 184 2 3 1402 384 247 0 56 chr5 107194918 107195008 -45342251 - ID_B1 SINE B4 0 224 140 3 1402 342 0 0 0 chr5 107195011 107195049 -45342210 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1402 417 242 240 24 chr5 107195118 107195322 -45341937 - B4 SINE B4 -44 248 14 3 1402 1031 45 98 0 chr5 107196016 107196149 -45341110 + B1_Mm SINE Alu 2 147 0 3 1402 648 320 0 77 chr5 107196882 107197102 -45340157 + B3 SINE B2 1 203 -13 3 1402 506 265 6 0 chr5 107197104 107197270 -45339989 + (CATA)n Simple_repeat Simple_repeat 1 167 0 3 1402 647 192 11 33 chr5 107197250 107197433 -45339826 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 3 1402 192 152 0 0 chr5 107197448 107197481 -45339778 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 3 1402 21 0 0 0 chr5 107197485 107197506 -45339753 + AT_rich Low_complexity Low_complexity 1 21 0 3 1402 1202 75 0 0 chr5 107197515 107197662 -45339597 + B1_Mus2 SINE Alu 1 147 0 3 1402 617 274 112 65 chr5 107198315 107198592 -45338667 + B4 SINE B4 1 290 -2 3 1402 269 143 268 14 chr5 107198925 107198996 -45338263 + ID_B1 SINE B4 125 213 -11 3 1402 261 265 44 0 chr5 107198937 107199005 -45338254 + PB1D7 SINE Alu 48 118 -2 3 1402 278 263 92 0 chr5 107199061 107199137 -45338122 + ID4_ SINE ID 1 83 0 3 1402 327 320 79 49 chr5 107199643 107199807 -45337452 + ORR1E LTR MaLR 8 176 -183 3 1402 1176 238 172 11 chr5 107200165 107200514 -45336745 + MTD LTR MaLR 8 412 -7 3 1402 317 304 26 18 chr5 107200519 107200633 -45336626 + ORR1E LTR MaLR 262 376 -3 3 1402 299 315 18 9 chr5 107200764 107200873 -45336386 + GA-rich Low_complexity Low_complexity 1 110 0 3 1402 752 180 4 0 chr5 107201626 107201866 -45335393 + (TGGA)n Simple_repeat Simple_repeat 1 241 0 3 1402 900 271 121 30 chr5 107202718 107203090 -45334169 - Charlie1a DNA MER1_type 0 1455 1050 3 1402 838 232 81 29 chr5 107203090 107203518 -45333741 + MT2B LTR ERVL 1 553 -48 3 1402 578 288 21 7 chr5 107203637 107203777 -45333482 + B1_Mur1 SINE Alu 2 143 -6 3 1402 221 281 230 14 chr5 107204153 107204301 -45332958 + ID_B1 SINE B4 12 191 -33 3 1402 227 31 31 0 chr5 107204304 107204336 -45332923 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 4 1402 1277 305 89 78 chr5 107204337 107204852 -45332407 - Charlie1a DNA MER1_type -502 953 440 3 1402 252 0 0 0 chr5 107204852 107204880 -45332379 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 4 1402 1277 305 89 78 chr5 107204880 107205164 -45332095 - Charlie1a DNA MER1_type -1016 439 146 3 1402 362 93 363 44 chr5 107205186 107205299 -45331960 - B2_Mm2 SINE B2 0 195 47 4 1402 1286 91 28 0 chr5 107205350 107205526 -45331733 - B2_Mm2 SINE B2 -14 181 1 4 1402 312 328 22 58 chr5 107205532 107205671 -45331588 - Charlie1a DNA MER1_type -1305 150 17 3 1402 259 278 32 89 chr5 107205866 107205949 -45331310 + L2a LINE L2 3276 3352 -74 4 1402 243 0 0 0 chr5 107205949 107205976 -45331283 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 4 1402 259 278 32 89 chr5 107205976 107206050 -45331209 + L2a LINE L2 3353 3424 -2 4 1402 267 140 0 0 chr5 107206246 107206296 -45330963 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1402 230 212 81 154 chr5 107206358 107206481 -45330778 + MT2B LTR ERVL 124 237 -364 4 1402 257 257 241 26 chr5 107206401 107206517 -45330742 + ID_B1 SINE B4 82 222 -2 4 1402 377 202 48 57 chr5 107206417 107206522 -45330737 + PB1D9 SINE Alu 17 120 0 4 1402 1258 164 142 59 chr5 107208064 107208203 -45329056 - Lx7 LINE L1 0 7696 7551 4 1402 243 61 0 0 chr5 107208203 107208236 -45329023 + (TATAA)n Simple_repeat Simple_repeat 4 36 0 4 1402 1258 164 142 59 chr5 107208236 107208434 -45328825 - Lx7 LINE L1 -146 7550 7333 4 1402 618 206 95 22 chr5 107208439 107208618 -45328641 - Lx7 LINE L1 -290 7406 7215 4 1402 828 212 2 0 chr5 107208668 107209162 -45328097 + (CA)n Simple_repeat Simple_repeat 1 494 0 4 1402 300 176 20 0 chr5 107209199 107209250 -45328009 + HAL1-3A_ME LINE L1 1976 2027 -831 4 1402 530 227 6 0 chr5 107209252 107209415 -45327844 + (CA)n Simple_repeat Simple_repeat 2 165 0 4 1402 247 203 14 14 chr5 107209423 107209493 -45327766 + GA-rich Low_complexity Low_complexity 2 71 0 4 1402 730 230 73 81 chr5 107209497 107209743 -45327516 + Lx7 LINE L1 6976 7219 -477 4 1402 339 316 108 60 chr5 107209947 107210098 -45327161 + ORR1E LTR MaLR 2 159 -200 4 1402 3447 35 2 5 chr5 107210098 107210506 -45326753 - MTB_Mm LTR MaLR 0 407 1 4 1402 339 316 108 60 chr5 107210506 107210539 -45326720 + ORR1E LTR MaLR 160 195 -164 4 1402 288 286 48 0 chr5 107211305 107211389 -45325870 + MIRc SINE MIR 80 167 -101 4 1402 570 15 0 0 chr5 107211413 107211480 -45325779 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1402 182 329 73 37 chr5 107211497 107211579 -45325680 - L2 LINE L2 -3260 159 75 4 1402 210 37 0 0 chr5 107211626 107211653 -45325606 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 4 1402 732 103 0 0 chr5 107212095 107212202 -45325057 + (CA)n Simple_repeat Simple_repeat 2 108 0 4 1402 576 257 27 48 chr5 107212342 107212367 -45324892 - MTEa LTR MaLR -235 144 125 4 1402 1403 143 88 251 chr5 107212367 107212842 -45324417 + RMER10B LTR ERVL 1 398 0 4 1402 576 257 27 48 chr5 107212842 107212963 -45324296 - MTEa LTR MaLR -255 124 1 4 1402 304 275 19 29 chr5 107213558 107213663 -45323596 + CT-rich Low_complexity Low_complexity 1 104 0 4 1402 25 0 0 0 chr5 107213817 107213842 -45323417 + AT_rich Low_complexity Low_complexity 1 25 0 4 1402 239 109 5 0 chr5 107214265 107214304 -45322955 - B2_Mm2 SINE B2 -78 115 75 4 1402 618 246 0 0 chr5 107214309 107214435 -45322824 + ID_B1 SINE B4 68 193 -31 4 1402 40 0 0 0 chr5 107214784 107214824 -45322435 + AT_rich Low_complexity Low_complexity 1 40 0 4 1402 2888 152 92 20 chr5 107214831 107215340 -45321919 + RMER15 LTR ERVL 29 574 -1 4 1402 716 161 97 0 chr5 107215713 107215837 -45321422 - MTC LTR MaLR -285 136 1 4 1402 227 292 123 9 chr5 107216465 107216503 -45320756 - PB1 SINE Alu 0 127 80 4 1402 1114 68 0 13 chr5 107216503 107216652 -45320607 - B1_Mus1 SINE Alu -1 147 1 4 1402 227 292 123 9 chr5 107216652 107216727 -45320532 - PB1 SINE Alu -48 79 1 4 1402 688 266 13 0 chr5 107216727 107216806 -45320453 - ID_B1 SINE B4 -68 156 1 4 1403 631 306 150 35 chr5 107217337 107217883 -45319376 + L1MA4A LINE L1 5278 5904 -399 4 1403 286 282 105 0 chr5 107218626 107218750 -45318509 - L1ME4a LINE L1 -5 6119 5983 4 1403 21 71 0 0 chr5 107218797 107218839 -45318420 + AT_rich Low_complexity Low_complexity 1 42 0 4 1403 1224 41 0 0 chr5 107218920 107219066 -45318193 + B1_Mus2 SINE Alu 2 147 0 4 1403 215 169 380 0 chr5 107219797 107219868 -45317391 - B1_Mus1 SINE Alu -32 116 19 4 1403 3718 99 36 28 chr5 107219869 107220448 -45316811 + RMER17B LTR ERVK 2 585 -373 4 1403 220 328 68 8 chr5 107220535 107220652 -45316607 - MIRb SINE MIR -27 241 118 4 1403 378 259 17 0 chr5 107221177 107221293 -45315966 - L1MD LINE L1 -922 5224 5107 4 1403 351 0 0 0 chr5 107221311 107221350 -45315909 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1403 237 242 97 21 chr5 107221387 107221480 -45315779 - B3A SINE B2 -66 132 33 4 1403 297 209 277 34 chr5 107221466 107221585 -45315674 + MTD LTR MaLR 211 375 -44 4 1403 22 0 0 0 chr5 107221585 107221607 -45315652 + AT_rich Low_complexity Low_complexity 1 22 0 4 1403 1355 80 17 0 chr5 107221607 107221783 -45315476 - B2_Mm2 SINE B2 -16 179 1 4 1403 294 247 109 13 chr5 107221784 107221940 -45315319 - L1M3c LINE L1 -4851 1290 1120 4 1403 215 254 0 0 chr5 107222238 107222299 -45314960 - ID4_ SINE ID -1 82 22 4 1403 642 367 90 33 chr5 107222325 107222812 -45314447 - LTR16E2 LTR ERVL -30 538 24 4 1403 354 335 131 5 chr5 107222917 107223115 -45314144 + MIRb SINE MIR 38 260 -8 4 1403 372 365 53 33 chr5 107224979 107225279 -45311980 - L4 LINE RTE -3 2026 1721 4 1403 1710 26 0 0 chr5 107225955 107226148 -45311111 - B2_Mm1a SINE B2 0 193 1 4 1403 572 302 12 6 chr5 107226536 107226696 -45310563 - RMER30 DNA MER1_type -34 168 8 4 1403 400 285 60 109 chr5 107226803 107227051 -45310208 - MLT1B LTR MaLR -22 368 133 4 1403 241 317 48 12 chr5 107227174 107227257 -45310002 + MLT1E2 LTR MaLR 80 165 -462 4 1403 395 182 88 33 chr5 107227388 107227479 -45309780 + MLT1D LTR MaLR 408 503 -2 4 1403 1516 62 5 0 chr5 107227514 107227706 -45309553 - B2_Mm1a SINE B2 0 193 1 4 1403 2082 107 58 10 chr5 107227909 107228221 -45309038 - ORR1A2 LTR MaLR 0 327 1 4 1403 240 235 29 14 chr5 107228548 107228617 -45308642 + MLT2B4 LTR ERVL 315 384 -172 4 1403 1167 55 14 0 chr5 107228836 107228982 -45308277 - B1_Mus1 SINE Alu 0 148 1 4 1403 809 117 71 28 chr5 107229053 107229194 -45308065 - B1_Mur3 SINE Alu -2 147 1 4 1403 758 89 11 76 chr5 107229305 107229569 -45307690 + (TG)n Simple_repeat Simple_repeat 1 246 0 4 1403 752 289 141 9 chr5 107229572 107229792 -45307467 - B4 SINE B4 0 292 44 4 1403 650 188 109 0 chr5 107229864 107229992 -45307267 - B1_Mur2 SINE Alu -7 142 1 4 1403 633 66 0 0 chr5 107230494 107230585 -45306674 + (CTGGGG)n Simple_repeat Simple_repeat 1 91 0 4 1403 257 274 180 41 chr5 107230602 107230796 -45306463 + Lx8 LINE L1 7253 7473 0 4 1403 319 316 49 37 chr5 107231019 107231183 -45306076 - MIR SINE MIR -79 183 18 4 1403 25 0 0 0 chr5 107231937 107231962 -45305297 + AT_rich Low_complexity Low_complexity 1 25 0 4 1403 275 271 48 86 chr5 107232082 107232098 -45305161 + B1F SINE Alu 44 144 -5 4 1403 419 191 11 56 chr5 107232098 107232187 -45305072 + ID_B1 SINE B4 135 219 -5 4 1403 216 0 0 0 chr5 107232366 107232390 -45304869 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1403 215 152 22 0 chr5 107232773 107232819 -45304440 + CT-rich Low_complexity Low_complexity 4 50 0 4 1403 776 164 8 0 chr5 107232820 107232954 -45304305 - B1_Mus1 SINE Alu -13 135 1 4 1403 396 291 36 43 chr5 107233029 107233169 -45304090 - RLTR14 LTR ERV1 0 382 244 4 1403 5444 188 132 19 chr5 107233395 107234665 -45302594 - Lx9 LINE L1 -76 7568 6156 4 1403 205 258 16 16 chr5 107235339 107235402 -45301857 + CT-rich Low_complexity Low_complexity 2 64 0 4 1403 298 0 0 45 chr5 107235937 107235981 -45301278 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 4 1403 1183 37 0 0 chr5 107235983 107236118 -45301141 - B1_Mus2 SINE Alu -12 135 1 4 1403 34 0 0 0 chr5 107236324 107236358 -45300901 + AT_rich Low_complexity Low_complexity 1 34 0 4 1403 198 300 71 0 chr5 107236363 107236433 -45300826 - MIR SINE MIR -68 194 120 4 1403 665 362 29 26 chr5 107236616 107236888 -45300371 + B4A SINE B4 2 274 -18 4 1403 771 179 0 0 chr5 107236950 107237129 -45300130 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1403 308 197 0 16 chr5 107237129 107237191 -45300068 + (CATA)n Simple_repeat Simple_repeat 3 63 0 4 1403 267 136 0 0 chr5 107237191 107237250 -45300009 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 4 1403 729 122 0 32 chr5 107237270 107237456 -45299803 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 4 1403 647 143 0 12 chr5 107237475 107237638 -45299621 + (CAGA)n Simple_repeat Simple_repeat 2 162 0 4 1403 297 0 0 0 chr5 107237639 107237672 -45299587 + (GA)n Simple_repeat Simple_repeat 2 34 0 4 1403 325 284 0 0 chr5 107238706 107238780 -45298479 + L1MC1 LINE L1 6047 6120 -213 4 1403 475 201 0 72 chr5 107238780 107238973 -45298286 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 1403 1747 216 119 78 chr5 107239199 107239887 -45297372 - ORR1D-int LTR MaLR -333 1037 7 4 1403 1421 258 61 38 chr5 107240631 107241106 -45296153 - Lx9 LINE L1 -299 7345 6860 4 1403 482 274 9 0 chr5 107241335 107241448 -45295811 - Lx9 LINE L1 -767 6877 6764 4 1403 2956 73 8 2 chr5 107241866 107242263 -45294996 + MTB_Mm LTR MaLR 4 402 -5 4 1403 253 279 60 85 chr5 107242290 107242525 -45294734 + RMER10A LTR ERVL 185 413 -29 4 1403 1917 187 65 35 chr5 107242751 107243150 -45294109 - Lx7 LINE L1 -484 7212 6802 4 1403 273 191 11 33 chr5 107244203 107244295 -45292964 + GA-rich Low_complexity Low_complexity 1 90 0 4 1403 338 290 14 35 chr5 107244307 107244450 -45292809 + GA-rich Low_complexity Low_complexity 3 142 0 4 1403 531 231 34 20 chr5 107246033 107246179 -45291080 + B1F SINE Alu 1 148 -1 4 1403 279 257 0 13 chr5 107246187 107246262 -45290997 + ID4 SINE ID 2 75 -8 4 1403 312 27 0 0 chr5 107246262 107246299 -45290960 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 4 1403 366 91 55 0 chr5 107246706 107246761 -45290498 - HAL1-3A_ME LINE L1 -827 2031 1974 5 1403 541 216 9 13 chr5 107246774 107247096 -45290163 + (TG)n Simple_repeat Simple_repeat 1 320 0 5 1403 303 132 19 0 chr5 107247188 107247241 -45290018 - HAL1-3A_ME LINE L1 -830 2028 1975 5 1403 529 210 261 25 chr5 107247623 107247784 -45289475 + B3 SINE B2 1 199 -17 5 1403 487 184 29 101 chr5 107248143 107248282 -45288977 + MT2B LTR ERVL 150 278 -323 5 1403 1098 51 0 0 chr5 107248171 107248309 -45288950 + B1_Mus2 SINE Alu 10 147 0 5 1403 261 83 0 0 chr5 107248309 107248345 -45288914 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1403 22 0 0 0 chr5 107250450 107250472 -45286787 + AT_rich Low_complexity Low_complexity 1 22 0 5 1403 3462 249 66 18 chr5 107250561 107251505 -45285754 - Lx8 LINE L1 -162 7311 6323 5 1403 328 233 0 0 chr5 107251907 107251967 -45285292 + B4 SINE B4 2 61 -231 5 1403 1371 55 21 42 chr5 107252015 107252205 -45285054 + B2_Mm2 SINE B2 3 188 -7 5 1403 2669 248 42 95 chr5 107252255 107253139 -45284120 - Lx9 LINE L1 -343 7301 6465 5 1403 519 237 72 0 chr5 107253141 107253280 -45283979 + Lx9 LINE L1 7357 7505 -139 5 1403 437 318 13 39 chr5 107253399 107253549 -45283710 + B4 SINE B4 81 226 -66 5 1403 856 184 12 5 chr5 107253549 107253742 -45283517 + B3 SINE B2 2 198 0 5 1403 221 250 37 73 chr5 107254803 107254885 -45282374 - ID4_ SINE ID -4 79 1 5 1403 296 148 16 0 chr5 107255413 107255474 -45281785 + CT-rich Low_complexity Low_complexity 1 62 0 5 1403 753 70 0 0 chr5 107255580 107255680 -45281579 + (TC)n Simple_repeat Simple_repeat 1 100 0 5 1403 188 340 62 31 chr5 107255712 107255809 -45281450 - L4 LINE RTE -1445 584 485 5 1403 1894 146 134 27 chr5 107255822 107256194 -45281065 - MTC LTR MaLR -9 412 1 5 1403 408 219 41 7 chr5 107256252 107256369 -45280890 - B3 SINE B2 -19 174 47 5 1403 460 283 0 0 chr5 107257631 107257723 -45279536 - B1F SINE Alu -45 104 13 5 1403 578 205 22 59 chr5 107257951 107258086 -45279173 - ORR1C2 LTR MaLR -83 301 172 5 1403 414 152 0 0 chr5 107258086 107258178 -45279081 + GA-rich Low_complexity Low_complexity 1 92 0 5 1403 1239 125 5 0 chr5 107258190 107258374 -45278885 - ORR1C2 LTR MaLR -199 185 1 5 1403 378 100 0 0 chr5 107258379 107258439 -45278820 + (A)n Simple_repeat Simple_repeat 1 60 0 5 1403 260 19 52 69 chr5 107259136 107259194 -45278065 + (CAAAA)n Simple_repeat Simple_repeat 5 61 0 5 1403 207 185 46 0 chr5 107259709 107259774 -45277485 + (CTATA)n Simple_repeat Simple_repeat 1 68 0 5 1403 486 274 16 8 chr5 107259998 107260123 -45277136 + RSINE1 SINE B4 8 133 -32 5 1403 552 183 0 37 chr5 107260424 107260532 -45276727 + Ricksha_0 DNA MuDR 386 489 -1244 5 1403 1310 261 140 94 chr5 107260748 107260839 -45276420 + Ricksha_0 DNA MuDR 797 893 -833 5 1403 207 0 0 0 chr5 107260839 107260862 -45276397 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1403 517 124 96 110 chr5 107260862 107260998 -45276261 - B1_Mur3 SINE Alu -11 138 5 5 1403 1310 261 140 94 chr5 107260998 107261224 -45276035 + Ricksha_0 DNA MuDR 894 1171 -555 5 1403 1234 48 0 7 chr5 107261224 107261371 -45275888 + B1_Mus2 SINE Alu 2 147 0 5 1403 1310 261 140 94 chr5 107261371 107261945 -45275314 + Ricksha_0 DNA MuDR 1172 1723 -3 5 1403 437 0 0 19 chr5 107262446 107262500 -45274759 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1403 767 122 8 0 chr5 107263124 107263255 -45274004 + (GA)n Simple_repeat Simple_repeat 1 132 0 5 1403 26 64 0 0 chr5 107263295 107263342 -45273917 + AT_rich Low_complexity Low_complexity 1 47 0 5 1403 202 236 0 65 chr5 107263459 107263536 -45273723 - L4 LINE RTE -1747 282 211 5 1403 512 251 3 25 chr5 107263540 107263679 -45273580 - Lx7 LINE L1 -410 7063 6913 5 1403 873 117 18 7 chr5 107263683 107263838 -45273421 + B2_Mm2 SINE B2 3 165 -51 5 1403 246 204 0 20 chr5 107263838 107263888 -45273371 + (TAA)n Simple_repeat Simple_repeat 2 50 0 5 1403 1141 69 14 0 chr5 107263931 107264076 -45273183 + B1_Mus2 SINE Alu 1 147 0 5 1403 1393 171 150 29 chr5 107264813 107265192 -45272067 + RMER10A LTR ERVL 18 442 0 5 1403 1001 219 40 0 chr5 107265732 107265933 -45271326 - B3 SINE B2 -7 209 1 5 1403 291 157 59 0 chr5 107266326 107266377 -45270882 + B1_Mus2 SINE Alu 1 54 -93 5 1403 594 198 0 0 chr5 107266391 107266553 -45270706 + GA-rich Low_complexity Low_complexity 2 163 0 5 1403 354 0 0 161 chr5 107266553 107266739 -45270520 + (CAGAG)n Simple_repeat Simple_repeat 5 160 0 5 1403 578 187 0 0 chr5 107266742 107266849 -45270410 + B1_Mus2 SINE Alu 40 146 -1 5 1403 308 180 33 0 chr5 107266971 107267032 -45270227 - MER5A1 DNA MER1_type -6 160 98 5 1403 235 355 98 14 chr5 107267493 107267636 -45269623 + L2c LINE L2 3002 3156 -231 5 1403 642 306 113 7 chr5 107268039 107268339 -45268920 + Tigger1 DNA MER2_type 2175 2389 -29 5 1403 185 305 0 63 chr5 107268348 107268411 -45268848 + L2c LINE L2 3282 3340 -86 5 1403 893 251 24 0 chr5 107268964 107269171 -45268088 + B3 SINE B2 3 214 -2 5 1403 531 170 220 20 chr5 107270409 107270559 -45266700 + B3A SINE B2 5 184 -14 5 1403 4253 97 47 8 chr5 107270792 107271404 -45265855 + L1Md_F2 LINE L1 5921 6556 -26 5 1403 577 144 115 0 chr5 107271820 107271924 -45265335 - B1_Mur2 SINE Alu -5 144 29 5 1403 191 280 20 0 chr5 107272204 107272254 -45265005 - L2a LINE L2 -32 3394 3344 5 1403 535 298 122 0 chr5 107272297 107272485 -45264774 + B4 SINE B4 9 219 -73 5 1403 425 311 50 45 chr5 107272539 107272741 -45264518 + B4A SINE B4 3 205 -87 5 1403 250 257 12 146 chr5 107272845 107272927 -45264332 + B4 SINE B4 219 289 -3 5 1403 594 304 0 0 chr5 107273482 107273617 -45263642 - RSINE1 SINE B4 -29 136 2 5 1403 346 352 7 7 chr5 107273769 107273909 -45263350 + Charlie8 DNA MER1_type 71 210 -2218 5 1403 304 271 39 54 chr5 107274135 107274264 -45262995 + MER5A DNA MER1_type 54 180 -9 5 1403 301 350 14 49 chr5 107274136 107274280 -45262979 - MER5A DNA MER1_type -44 145 7 5 1403 379 217 12 24 chr5 107274605 107274690 -45262569 + B4 SINE B4 1 84 -208 5 1403 1728 206 80 5 chr5 107274771 107275161 -45262098 - MTD LTR MaLR 0 419 1 5 1403 986 209 38 48 chr5 107276135 107276362 -45260897 + B3 SINE B2 7 211 -5 5 1403 366 132 0 0 chr5 107276532 107276608 -45260651 + (GA)n Simple_repeat Simple_repeat 2 77 0 5 1403 530 296 12 30 chr5 107277170 107277337 -45259922 - RSINE1 SINE B4 0 165 2 5 1403 328 259 103 73 chr5 107277430 107277663 -45259596 - MER63D DNA AcHobo -803 258 19 5 1403 239 318 0 12 chr5 107278610 107278696 -45258563 + GA-rich Low_complexity Low_complexity 3 87 0 5 1403 231 133 0 0 chr5 107278994 107279039 -45258220 + (CAT)n Simple_repeat Simple_repeat 2 46 0 5 1403 627 284 77 44 chr5 107279264 107279537 -45257722 + MLT1K LTR MaLR 286 567 -28 5 1403 635 269 90 0 chr5 107280025 107280192 -45257067 + MIR3 SINE MIR 19 200 -8 5 1403 189 277 0 0 chr5 107280374 107280421 -45256838 - MIRb SINE MIR -38 230 184 5 1403 261 222 111 0 chr5 107280987 107281050 -45256209 - ID4 SINE ID -3 80 11 5 1403 188 34 0 33 chr5 107281323 107281353 -45255906 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1403 985 54 8 0 chr5 107281353 107281482 -45255777 - B1_Mm SINE Alu -9 138 9 5 1403 305 280 35 61 chr5 107281539 107281582 -45255677 - MIRc SINE MIR -76 192 155 5 1403 496 259 185 0 chr5 107281582 107281717 -45255542 - RSINE1 SINE B4 -4 161 2 5 1403 305 280 35 61 chr5 107281717 107281787 -45255472 - MIRc SINE MIR -114 154 82 5 1403 341 291 94 47 chr5 107282750 107282984 -45254275 + Lx8 LINE L1 7222 7466 -7 5 1403 398 368 0 29 chr5 107283159 107283177 -45254082 + ID_B1 SINE B4 78 213 -11 5 1403 466 328 25 0 chr5 107283177 107283299 -45253960 + B1F1 SINE Alu 14 138 -11 5 1403 288 321 52 41 chr5 107284043 107284215 -45253044 + L2 LINE L2 2253 2426 -993 5 1403 1444 219 100 3 chr5 107284254 107284584 -45252675 + ORR1D2 LTR MaLR 9 370 0 5 1403 249 362 142 45 chr5 107284632 107284909 -45252350 + L2 LINE L2 2436 2745 -674 5 1403 2235 68 61 13 chr5 107284909 107285221 -45252038 - ORR1A2 LTR MaLR 0 327 1 5 1403 249 362 142 45 chr5 107285221 107285478 -45251781 + L2 LINE L2 2746 3022 -397 5 1403 524 214 20 0 chr5 107286046 107286144 -45251115 - PB1D10 SINE Alu 0 117 18 5 1403 483 224 83 14 chr5 107286385 107286530 -45250729 - B3A SINE B2 -4 194 40 5 1403 22 35 0 0 chr5 107286667 107286696 -45250563 + AT_rich Low_complexity Low_complexity 1 29 0 5 1403 32 81 0 0 chr5 107287172 107287246 -45250013 + AT_rich Low_complexity Low_complexity 1 74 0 5 1403 21 0 0 0 chr5 107287268 107287289 -45249970 + AT_rich Low_complexity Low_complexity 1 21 0 5 1403 362 230 27 0 chr5 107287289 107287363 -45249896 - ID4_ SINE ID -5 78 3 5 1403 247 290 20 20 chr5 107287723 107287825 -45249434 + Charlie17a DNA MER1_type 3 104 -115 5 1403 225 182 179 18 chr5 107287871 107287927 -45249332 + ORR1D2 LTR MaLR 6 70 -300 5 1403 250 182 0 0 chr5 107288273 107288317 -45248942 - ORR1C2 LTR MaLR 0 379 336 5 1403 568 226 81 58 chr5 107288317 107288491 -45248768 + B3A SINE B2 5 182 -16 5 1403 407 169 0 144 chr5 107288469 107288566 -45248693 - MTEa LTR MaLR -296 83 1 5 1403 430 312 69 69 chr5 107288602 107288819 -45248440 + MER90 LTR ERV1 41 257 -318 5 1403 277 270 73 98 chr5 107288852 107288865 -45248394 - RSINE1 SINE B4 -35 130 118 5 1403 810 76 0 0 chr5 107288865 107288984 -45248275 + (TG)n Simple_repeat Simple_repeat 1 119 0 5 1403 277 270 73 98 chr5 107288984 107289093 -45248166 - RSINE1 SINE B4 -48 117 11 5 1403 387 0 0 0 chr5 107289775 107289818 -45247441 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5 1403 1145 70 0 0 chr5 107289824 107289966 -45247293 - B1_Mm SINE Alu -5 142 1 5 1403 250 268 77 135 chr5 107290169 107290428 -45246831 + RLTR12B LTR ERVK 11 254 -274 5 1403 399 184 26 8 chr5 107290432 107290526 -45246733 + ORR1A2 LTR MaLR 1 93 -236 5 1403 3626 115 8 24 chr5 107290530 107291114 -45246145 + L1Md_F LINE L1 575 1096 -5520 5 1403 1253 34 0 0 chr5 107291114 107291261 -45245998 - B1_Mm SINE Alu 0 147 1 5 1403 27803 68 6 157 chr5 107291261 107295073 -45242186 + L1Md_F LINE L1 1081 4561 -1322 5 1403 972 178 45 134 chr5 107295073 107295365 -45241894 - ORR1C2 LTR MaLR -118 266 1 5 1403 27803 68 6 157 chr5 107295365 107295760 -45241499 + L1Md_F LINE L1 4562 4921 -962 5 1403 217 398 53 11 chr5 107295760 107295854 -45241405 - RSINE1 SINE B4 -13 152 55 5 1403 27803 68 6 157 chr5 107295854 107296562 -45240697 + L1Md_F LINE L1 4922 5571 -312 5 1403 1918 106 28 0 chr5 107296562 107296578 -45240681 + ORR1A2 LTR MaLR 28 43 -284 6 1403 7224 61 40 5 chr5 107296578 107297528 -45239731 + L1Md_F2 LINE L1 5588 6570 -12 6 1403 1918 106 28 0 chr5 107297528 107297795 -45239464 + ORR1A2 LTR MaLR 44 318 -9 6 1403 354 271 66 7 chr5 107297968 107298138 -45239121 - L1_Mur3 LINE L1 -3379 2468 2273 6 1403 1346 242 64 34 chr5 107298231 107298638 -45238621 + MTD LTR MaLR 1 419 0 6 1403 413 312 93 27 chr5 107298797 107299397 -45237862 - L1M2 LINE L1 -4046 2803 2164 6 1403 601 211 47 0 chr5 107301632 107301760 -45235499 - ID_B1 SINE B4 -1 223 90 6 1403 295 372 63 13 chr5 107302184 107302342 -45234917 + MIR SINE MIR 3 168 -94 6 1403 802 294 73 26 chr5 107303489 107303761 -45233498 - B4A SINE B4 0 292 8 6 1403 271 303 26 0 chr5 107304039 107304115 -45233144 + ID4_ SINE ID 4 81 -2 6 1403 609 264 0 8 chr5 107304695 107304825 -45232434 + RSINE1 SINE B4 37 165 0 6 1403 247 139 0 0 chr5 107305880 107305916 -45231343 + MTEb LTR MaLR 1 36 -343 6 1403 848 202 24 29 chr5 107305929 107306138 -45231121 - B3 SINE B2 -7 209 2 6 1403 233 286 0 0 chr5 107306187 107306236 -45231023 - B1F2 SINE Alu -100 49 1 6 1403 221 245 0 75 chr5 107306193 107306246 -45231013 - ID_B1 SINE B4 -100 124 76 6 1403 310 281 16 40 chr5 107306736 107306862 -45230397 + RLTR17 LTR ERVK 116 238 -454 6 1403 586 235 80 60 chr5 107306903 107307102 -45230157 + RLTR17 LTR ERVK 319 521 -171 6 1403 339 129 48 0 chr5 107307145 107307207 -45230052 + RLTR31_Mur LTR ERVK 489 553 0 6 1403 573 252 109 0 chr5 107307280 107307427 -45229832 - RSINE1 SINE B4 0 165 3 6 1403 26 30 0 0 chr5 107307531 107307564 -45229695 + AT_rich Low_complexity Low_complexity 1 33 0 6 1403 495 221 0 10 chr5 107308337 107308433 -45228826 + B1_Mur2 SINE Alu 53 147 -2 6 1403 337 261 0 0 chr5 107308610 107308703 -45228556 - ID4_ SINE ID -59 93 1 6 1403 32 43 0 0 chr5 107308772 107308818 -45228441 + AT_rich Low_complexity Low_complexity 1 46 0 6 1403 268 298 51 34 chr5 107308828 107308946 -45228313 + PB1D7 SINE Alu 1 120 0 6 1403 438 108 0 0 chr5 107308946 107309011 -45228248 + (GAAA)n Simple_repeat Simple_repeat 3 67 0 6 1403 188 229 42 0 chr5 107309725 107309773 -45227486 - MIRm SINE MIR 0 276 227 6 1403 835 54 0 9 chr5 107312410 107312522 -45224737 - L1_Mus2 LINE L1 -624 5942 5832 6 1403 5046 43 33 2 chr5 107312522 107313155 -45224104 + L1_Mus2 LINE L1 5914 6566 0 6 1403 302 385 57 43 chr5 107313201 107313500 -45223759 + LTR16B2 LTR ERVL 9 311 -151 6 1403 318 106 0 0 chr5 107313500 107313547 -45223712 + (TTCC)n Simple_repeat Simple_repeat 4 50 0 6 1403 1437 70 5 0 chr5 107313779 107313965 -45223294 + B2_Mm1t SINE B2 2 188 -5 6 1403 480 228 32 27 chr5 107314013 107314149 -45223110 + PB1D7 SINE Alu 1 141 -9 6 1403 715 158 97 8 chr5 107314284 107314418 -45222841 + B1_Mur4 SINE Alu 1 146 -4 6 1403 266 0 0 29 chr5 107314959 107314994 -45222265 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1403 1071 67 7 0 chr5 107314994 107315129 -45222130 - B1_Mm SINE Alu -10 137 2 6 1403 22 56 0 0 chr5 107315653 107315689 -45221570 + AT_rich Low_complexity Low_complexity 1 36 0 6 1403 217 246 0 0 chr5 107315815 107315872 -45221387 + (TA)n Simple_repeat Simple_repeat 2 58 0 6 1403 343 351 44 7 chr5 107317476 107317611 -45219648 - L2a LINE L2 -254 3172 3033 6 1403 264 281 125 43 chr5 107317690 107317898 -45219361 - L2a LINE L2 -414 3005 2781 6 1403 219 36 0 0 chr5 107318212 107318240 -45219019 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1403 1100 103 0 0 chr5 107318242 107318388 -45218871 - B1_Mus2 SINE Alu -1 146 1 6 1403 1148 61 0 7 chr5 107318483 107318631 -45218628 + B1_Mus1 SINE Alu 1 147 -1 6 1403 21 36 0 0 chr5 107318815 107318843 -45218416 + AT_rich Low_complexity Low_complexity 1 28 0 6 1403 533 137 41 21 chr5 107319892 107319989 -45217270 + B3A SINE B2 22 120 -78 6 1403 383 262 176 26 chr5 107319989 107320117 -45217142 + B4A SINE B4 23 281 -11 6 1403 740 254 13 13 chr5 107320232 107320459 -45216800 + L1MA4A LINE L1 5665 5891 -412 6 1403 423 0 0 0 chr5 107320475 107320522 -45216737 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1403 561 262 142 18 chr5 107321027 107321275 -45215984 + MLT1F1 LTR MaLR 357 680 0 6 1403 21 57 0 0 chr5 107322644 107322679 -45214580 + AT_rich Low_complexity Low_complexity 1 35 0 6 1403 1120 55 14 0 chr5 107322863 107323009 -45214250 + B1_Mus1 SINE Alu 1 148 0 6 1403 337 156 109 0 chr5 107323023 107323087 -45214172 + Lx3B LINE L1 6902 6972 -1 6 1403 1853 130 71 22 chr5 107323216 107323539 -45213720 + MTC LTR MaLR 83 421 0 6 1403 368 271 61 20 chr5 107323813 107323911 -45213348 + B1F1 SINE Alu 3 104 -45 6 1403 1588 47 0 0 chr5 107324752 107324944 -45212315 + B2_Mm1t SINE B2 1 192 -1 6 1403 26 0 0 0 chr5 107325349 107325375 -45211884 + AT_rich Low_complexity Low_complexity 1 26 0 6 1403 1197 55 0 0 chr5 107325375 107325520 -45211739 - B1_Mus2 SINE Alu -2 145 1 6 1403 1100 114 11 0 chr5 107325522 107325697 -45211562 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 6 1403 917 93 0 0 chr5 107325734 107325863 -45211396 - B2_Mm1t SINE B2 -15 178 50 6 1403 212 293 27 0 chr5 107326475 107326550 -45210709 + ID4 SINE ID 1 77 -6 6 1403 497 248 76 0 chr5 107328094 107328239 -45209020 - B3A SINE B2 -42 156 1 6 1403 578 187 9 9 chr5 107328330 107328438 -45208821 + RLTR18 LTR ERVK 463 570 -46 6 1403 409 305 46 13 chr5 107328434 107328587 -45208672 - RLTR18B LTR ERVK -169 343 186 6 1403 735 292 53 66 chr5 107328642 107328946 -45208313 - RLTR18 LTR ERVK -311 305 6 6 1403 1155 179 45 5 chr5 107329186 107329388 -45207871 + B3 SINE B2 1 210 -6 6 1403 599 106 0 0 chr5 107329448 107329533 -45207726 + BC1_Mm scRNA scRNA 1 85 -67 6 1403 407 276 20 0 chr5 107329533 107329546 -45207713 + ID_B1 SINE B4 1 100 -124 6 1403 2814 110 39 16 chr5 107329555 107329974 -45207285 - RMER6A LTR ERVK -8 748 328 6 1403 276 77 0 0 chr5 107329974 107330013 -45207246 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1403 2814 110 39 16 chr5 107330013 107330082 -45207177 - RMER6A LTR ERVK -429 327 250 6 1403 3128 9 0 0 chr5 107330284 107330630 -45206629 + ORR1A0 LTR MaLR 1 346 0 6 1403 1103 216 25 0 chr5 107331424 107331623 -45205636 - B3 SINE B2 -8 208 5 6 1403 298 246 101 0 chr5 107332615 107332684 -45204575 + ID4 SINE ID 2 77 -6 6 1403 22 56 0 0 chr5 107333203 107333239 -45204020 + AT_rich Low_complexity Low_complexity 1 36 0 6 1403 21 36 0 0 chr5 107333394 107333422 -45203837 + AT_rich Low_complexity Low_complexity 1 28 0 6 1403 830 205 139 46 chr5 107333983 107334177 -45203082 + B3 SINE B2 1 212 -4 6 1403 883 162 178 0 chr5 107334590 107334781 -45202478 + URR1B DNA MER1_type 1 225 0 6 1403 555 290 75 24 chr5 107334950 107335129 -45202130 + B3A SINE B2 1 186 -9 6 1403 219 332 76 61 chr5 107335195 107335458 -45201801 + L2 LINE L2 2795 3061 -358 6 1403 1786 62 20 8 chr5 107335513 107335759 -45201500 + L1_Mus1 LINE L1 6319 6567 0 6 1403 21 0 0 0 chr5 107336586 107336607 -45200652 + AT_rich Low_complexity Low_complexity 1 21 0 6 1403 659 206 36 52 chr5 107336958 107337152 -45200107 + RLTR15 LTR ERVK 1 191 -168 6 1403 777 262 78 36 chr5 107337391 107337473 -45199786 + RLTR15 LTR ERVK 22 103 -256 6 1403 204 23 116 0 chr5 107337473 107337516 -45199743 + (CAGA)n Simple_repeat Simple_repeat 2 49 0 6 1403 777 262 78 36 chr5 107337516 107337742 -45199517 + RLTR15 LTR ERVK 104 342 -17 6 1403 21 36 0 0 chr5 107337843 107337871 -45199388 + AT_rich Low_complexity Low_complexity 1 28 0 6 1403 283 207 124 0 chr5 107338042 107338187 -45199072 - Lx9 LINE L1 -1 7643 7481 6 1403 252 206 16 0 chr5 107338188 107338251 -45199008 + (TATAA)n Simple_repeat Simple_repeat 5 68 0 6 1403 3928 187 46 4 chr5 107338257 107339078 -45198181 - Lx9 LINE L1 -131 7513 6658 6 1403 472 276 91 11 chr5 107339078 107339254 -45198005 - B4A SINE B4 -20 272 83 6 1403 1534 169 73 38 chr5 107339268 107339581 -45197678 + ORR1D1 LTR MaLR 51 374 0 6 1403 266 328 105 15 chr5 107339806 107339939 -45197320 - Charlie10 DNA MER1_type -2677 145 1 6 1403 225 0 0 0 chr5 107340140 107340165 -45197094 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1403 21 0 0 0 chr5 107340266 107340287 -45196972 + AT_rich Low_complexity Low_complexity 1 21 0 6 1403 534 307 75 122 chr5 107340805 107341377 -45195882 + MLT1F LTR MaLR 1 545 -3 6 1403 1219 153 14 27 chr5 107341666 107341887 -45195372 - URR1B DNA MER1_type -4 221 4 6 1403 342 0 0 0 chr5 107342014 107342052 -45195207 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1403 494 292 37 38 chr5 107342250 107342428 -45194831 - B1F1 SINE Alu -120 194 20 6 1403 232 370 49 25 chr5 107342339 107342461 -45194798 - B4A SINE B4 -93 199 75 6 1403 872 302 104 78 chr5 107342469 107343252 -45194007 - L1_Rod LINE L1 -3129 3011 2202 6 1403 315 0 0 0 chr5 107343252 107343287 -45193972 + (ATG)n Simple_repeat Simple_repeat 2 36 0 6 1403 752 230 0 0 chr5 107343289 107343428 -45193831 - B1_Mur2 SINE Alu -6 143 5 6 1403 872 300 103 89 chr5 107343428 107343861 -45193398 - L1_Rod LINE L1 -3646 2201 1746 6 1403 3820 183 119 16 chr5 107344114 107344993 -45192266 + Lx9 LINE L1 6592 7565 -79 6 1403 2221 95 38 0 chr5 107344993 107345308 -45191951 - ORR1A2 LTR MaLR 0 327 1 6 1403 3820 183 119 16 chr5 107345308 107345377 -45191882 + Lx9 LINE L1 7566 7638 -6 6 1403 541 290 22 0 chr5 107345690 107345828 -45191431 + B1_Mur1 SINE Alu 1 141 -8 6 1403 258 132 0 0 chr5 107345846 107345899 -45191360 + (TATG)n Simple_repeat Simple_repeat 4 56 0 6 1403 417 244 56 16 chr5 107345951 107346076 -45191183 + Charlie1a DNA MER1_type 1326 1455 0 6 1403 654 237 44 13 chr5 107346749 107346907 -45190352 + RSINE1 SINE B4 3 165 0 7 1404 1352 262 52 12 chr5 107348356 107348700 -45188559 - MER68 LTR ERVL -175 388 31 7 1404 327 361 33 33 chr5 107348954 107349169 -45188090 - MTD LTR MaLR -204 215 1 7 1404 3376 41 0 130 chr5 107349619 107350120 -45187139 + RLTR10C LTR ERVK 1 436 0 7 1404 188 241 78 94 chr5 107350120 107350184 -45187075 - L2a LINE L2 -3 3423 3361 7 1404 189 213 119 90 chr5 107350151 107350218 -45187041 - MIR SINE MIR -27 235 167 7 1404 337 139 385 20 chr5 107350865 107350964 -45186295 - B2_Mm2 SINE B2 -14 181 46 7 1404 225 0 0 0 chr5 107351008 107351033 -45186226 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 7 1404 1048 96 6 55 chr5 107351036 107351201 -45186058 - B2_Mm1t SINE B2 -36 157 1 7 1404 23 54 0 0 chr5 107351319 107351356 -45185903 + AT_rich Low_complexity Low_complexity 1 37 0 7 1404 271 315 54 27 chr5 107352347 107352494 -45184765 + MamRep564 Unknown Unknown 133 283 -74 7 1404 1279 150 82 8 chr5 107352740 107353008 -45184251 - Lx2B LINE L1 -51 6949 6662 7 1404 1426 72 0 25 chr5 107353226 107353424 -45183835 + B2_Mm2 SINE B2 1 193 -2 7 1404 273 299 130 30 chr5 107353866 107353997 -45183262 + L2a LINE L2 3280 3423 -3 7 1404 328 263 53 0 chr5 107354257 107354333 -45182926 + ID_B1 SINE B4 88 167 -57 7 1404 299 272 31 42 chr5 107354333 107354347 -45182912 + PB1 SINE Alu 24 95 -32 7 1404 438 20 0 0 chr5 107354348 107354399 -45182860 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1404 274 257 99 0 chr5 107354641 107354742 -45182517 + PB1D7 SINE Alu 6 116 -4 7 1404 210 71 0 0 chr5 107355013 107355041 -45182218 + (CTCG)n Simple_repeat Simple_repeat 3 30 0 7 1404 294 294 7 30 chr5 107355075 107355237 -45182022 + C-rich Low_complexity Low_complexity 1 158 0 7 1404 821 220 124 0 chr5 107356339 107356525 -45180734 + B3 SINE B2 1 209 -7 7 1404 616 339 45 119 chr5 107356924 107357011 -45180248 - L1ME1 LINE L1 0 6179 6094 7 1404 189 0 0 0 chr5 107357011 107357032 -45180227 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1404 616 339 45 119 chr5 107357032 107357449 -45179810 - L1ME1 LINE L1 -86 6093 5712 7 1404 212 234 21 0 chr5 107357653 107357700 -45179559 - RSINE1 SINE B4 -116 49 2 7 1404 247 301 21 0 chr5 107357795 107357888 -45179371 - L1ME1 LINE L1 -568 5611 5517 7 1404 674 183 84 13 chr5 107357900 107358055 -45179204 + ORR1D1 LTR MaLR 1 166 -208 7 1404 999 227 49 69 chr5 107358055 107358405 -45178854 + RLTR15 LTR ERVK 1 343 -16 7 1404 1027 197 72 57 chr5 107358369 107358633 -45178626 + ORR1C2 LTR MaLR 107 374 -10 7 1404 189 0 0 0 chr5 107358795 107358816 -45178443 + (CAGT)n Simple_repeat Simple_repeat 4 24 0 7 1404 396 325 128 19 chr5 107358879 107359246 -45178013 - L1ME1 LINE L1 -969 5177 4771 7 1404 335 351 7 0 chr5 107359254 107359408 -45177851 - L1ME1 LINE L1 -3985 2257 2103 7 1404 393 277 120 13 chr5 107359431 107359581 -45177678 - L1ME1 LINE L1 -4187 2055 1890 7 1404 400 301 129 7 chr5 107359746 107359893 -45177366 - B4 SINE B4 -126 166 2 7 1404 722 159 0 77 chr5 107359894 107360037 -45177222 - B1_Mur2 SINE Alu -13 136 5 7 1404 313 310 65 16 chr5 107360043 107360289 -45176970 - L1ME1 LINE L1 -4441 1801 1544 7 1404 321 173 173 0 chr5 107360342 107360417 -45176842 - PB1D7 SINE Alu 0 120 33 7 1404 2744 135 5 19 chr5 107360469 107360794 -45176465 + MTC LTR MaLR 3 326 -95 7 1404 3477 25 0 133 chr5 107360794 107361297 -45175962 + RLTR10C LTR ERVK 1 436 0 7 1404 2744 135 5 19 chr5 107361297 107361395 -45175864 + MTC LTR MaLR 327 420 -1 7 1404 471 250 16 89 chr5 107361470 107361593 -45175666 - B3 SINE B2 -102 114 1 7 1404 634 215 54 0 chr5 107361769 107361899 -45175360 + B3 SINE B2 74 210 -6 7 1404 294 309 12 0 chr5 107362053 107362137 -45175122 - B1_Mur3 SINE Alu 0 149 65 7 1404 538 278 8 0 chr5 107362103 107362229 -45175030 - B1F1 SINE Alu -22 127 1 7 1404 1238 48 0 0 chr5 107362302 107362449 -45174810 - B1_Mus1 SINE Alu 0 148 2 7 1404 1343 72 27 22 chr5 107362674 107362858 -45174401 + B2_Mm2 SINE B2 1 185 -10 7 1404 24 0 0 0 chr5 107362861 107362885 -45174374 + AT_rich Low_complexity Low_complexity 1 24 0 7 1404 656 64 11 0 chr5 107362908 107363002 -45174257 + (TG)n Simple_repeat Simple_repeat 2 96 0 7 1404 229 209 0 0 chr5 107363669 107363712 -45173547 - U2 snRNA snRNA -145 43 1 7 1404 225 83 0 0 chr5 107363777 107363813 -45173446 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1404 35598 22 0 11 chr5 107364614 107369637 -45167622 + L1Md_A LINE L1 627 5586 -297 7 1404 8470 33 0 0 chr5 107369637 107370632 -45166627 + L1Md_A LINE L1 5587 6581 -1 7 1404 270 312 82 9 chr5 107370808 107370918 -45166341 + MIRb SINE MIR 128 245 -23 7 1404 246 182 148 0 chr5 107371254 107371342 -45165917 - L1MEc LINE L1 -5942 458 358 7 1404 270 0 0 0 chr5 107371947 107371977 -45165282 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 7 1404 1032 117 7 0 chr5 107372086 107372231 -45165028 - B2_Mm1t SINE B2 -45 148 3 7 1404 270 81 0 0 chr5 107372250 107372287 -45164972 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 7 1404 952 51 60 80 chr5 107372287 107372437 -45164822 - B1_Mus1 SINE Alu 0 148 2 7 1404 524 281 165 12 chr5 107373731 107373980 -45163279 + B4A SINE B4 2 288 -4 7 1404 254 176 43 14 chr5 107373994 107374063 -45163196 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1404 29 0 0 0 chr5 107374067 107374096 -45163163 + AT_rich Low_complexity Low_complexity 1 29 0 7 1404 522 238 15 30 chr5 107374113 107374247 -45163012 + B1F SINE Alu 1 132 -17 7 1404 207 161 0 0 chr5 107374328 107374384 -45162875 + (TCTG)n Simple_repeat Simple_repeat 2 57 0 7 1404 222 37 0 0 chr5 107374384 107374411 -45162848 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1404 208 235 29 0 chr5 107374421 107374463 -45162796 + (TCTG)n Simple_repeat Simple_repeat 4 47 0 7 1404 189 0 0 0 chr5 107374463 107374484 -45162775 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1404 208 235 29 0 chr5 107374484 107374509 -45162750 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 7 1404 209 109 65 0 chr5 107374560 107374606 -45162653 + (TCTG)n Simple_repeat Simple_repeat 3 51 0 7 1404 303 28 0 0 chr5 107374622 107374658 -45162601 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1404 503 351 41 47 chr5 107375081 107375398 -45161861 + L2 LINE L2 2165 2479 -940 7 1404 663 304 152 0 chr5 107375761 107376004 -45161255 + MamRep605 Unknown Unknown 538 817 -59 7 1404 2276 112 6 0 chr5 107376602 107376922 -45160337 - ORR1A2 LTR MaLR -5 322 1 7 1404 327 246 0 0 chr5 107377233 107377298 -45159961 + ID4_ SINE ID 3 67 -16 7 1404 1386 40 0 0 chr5 107377298 107377472 -45159787 + RLTR10-int LTR ERVK 1813 1986 -1 7 1404 2345 72 119 11 chr5 107377472 107377824 -45159435 + RLTR10 LTR ERVK 1 390 0 7 1404 412 353 59 52 chr5 107378102 107378389 -45158870 + MER102c DNA MER1_type 43 331 0 7 1404 696 70 45 39 chr5 107378652 107379129 -45158130 + (CA)n Simple_repeat Simple_repeat 1 479 0 7 1404 467 308 42 0 chr5 107379447 107379590 -45157669 + ID_B1 SINE B4 76 224 0 7 1404 859 154 15 0 chr5 107380048 107380184 -45157075 + B1_Mus1 SINE Alu 3 140 -8 7 1404 1267 89 6 16 chr5 107380404 107380586 -45156673 - B2_Mm2 SINE B2 -14 181 2 7 1404 339 328 63 58 chr5 107380669 107380900 -45156359 + MLT1A1 LTR MaLR 26 297 -111 7 1404 1337 71 55 0 chr5 107381142 107381324 -45155935 - B2_Mm2 SINE B2 -3 192 1 7 1404 451 277 19 63 chr5 107381340 107381362 -45155897 + ID_B1 SINE B4 73 223 -1 7 1404 594 244 29 7 chr5 107381362 107381498 -45155761 + B1_Mur1 SINE Alu 10 148 -1 7 1404 280 141 31 15 chr5 107381501 107381566 -45155693 + A-rich Low_complexity Low_complexity 2 67 0 7 1404 234 193 0 0 chr5 107381778 107381835 -45155424 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1404 880 267 65 65 chr5 107381840 107382132 -45155127 - B4A SINE B4 0 292 1 7 1404 311 117 0 0 chr5 107382268 107382321 -45154938 + MT2A LTR ERVL 488 533 0 7 1404 650 136 8 0 chr5 107382555 107382673 -45154586 + (TTCCC)n Simple_repeat Simple_repeat 3 121 0 7 1404 316 287 69 0 chr5 107382694 107382781 -45154478 - PB1D10 SINE Alu -19 98 6 7 1404 3584 155 128 39 chr5 107382850 107383741 -45153518 - RLTR25A LTR ERVK -3 1025 1 7 1404 225 348 62 55 chr5 107383779 107383925 -45153334 - B4A SINE B4 -62 230 84 7 1404 206 331 114 7 chr5 107384159 107384299 -45152960 - MIR SINE MIR -92 170 16 7 1404 262 330 0 5 chr5 107384620 107384706 -45152553 - ID4 SINE ID -53 99 16 7 1404 1435 134 5 5 chr5 107386106 107386330 -45150929 - URR1A DNA MER1_type -1 225 2 7 1404 628 309 131 27 chr5 107386420 107386862 -45150397 + MLT1D LTR MaLR 2 489 -16 7 1404 27 29 0 0 chr5 107386862 107386896 -45150363 + AT_rich Low_complexity Low_complexity 1 34 0 7 1404 949 79 0 0 chr5 107388278 107388405 -45148854 - B1_Mus1 SINE Alu -21 127 1 7 1404 1174 222 125 153 chr5 107388614 107389236 -45148023 + RMER19B LTR ERVK 298 902 0 7 1404 766 283 27 41 chr5 107390659 107390954 -45146305 + B4 SINE B4 2 292 0 7 1404 244 167 18 18 chr5 107391129 107391184 -45146075 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1404 404 280 16 33 chr5 107391294 107391416 -45145843 - PB1D7 SINE Alu 0 120 1 7 1404 748 177 0 8 chr5 107391515 107391646 -45145613 - B3 SINE B2 -85 131 2 7 1404 1928 190 76 112 chr5 107391675 107392226 -45145033 + MT2A LTR ERVL 1 531 -2 7 1404 446 285 126 29 chr5 107392708 107392914 -45144345 + Lx8 LINE L1 7113 7338 -135 7 1404 1341 81 5 11 chr5 107395569 107395757 -45141502 - B2_Mm2 SINE B2 -8 187 1 7 1404 467 183 8 0 chr5 107396165 107396296 -45140963 + (TG)n Simple_repeat Simple_repeat 1 132 0 7 1404 1026 226 83 0 chr5 107396341 107396593 -45140666 - B4 SINE B4 -18 274 2 7 1404 233 339 15 0 chr5 107396660 107396725 -45140534 - ID4_ SINE ID -14 69 4 7 1404 240 269 10 79 chr5 107396750 107396851 -45140408 - ZP3AR Satellite Satellite -78 134 41 7 1404 243 0 0 0 chr5 107397461 107397488 -45139771 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1404 1078 76 0 27 chr5 107397488 107397637 -45139622 - B1_Mus1 SINE Alu -3 145 1 8 1404 29 60 0 0 chr5 107397679 107397729 -45139530 + AT_rich Low_complexity Low_complexity 1 50 0 8 1404 244 299 46 0 chr5 107397739 107397826 -45139433 + PB1D10 SINE Alu 24 114 -3 8 1404 731 294 91 23 chr5 107398825 107399176 -45138083 - L1MA5 LINE L1 -34 6266 5892 8 1404 407 209 23 11 chr5 107399447 107399534 -45137725 + B1F SINE Alu 18 105 -44 8 1404 198 0 0 0 chr5 107399538 107399560 -45137699 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 8 1404 21 0 0 0 chr5 107399571 107399592 -45137667 + GC_rich Low_complexity Low_complexity 1 21 0 8 1404 729 205 161 150 chr5 107399630 107399908 -45137351 + MTE2a LTR MaLR 1 289 -90 8 1404 2672 60 88 26 chr5 107399908 107400285 -45136974 - MTB LTR MaLR 0 400 1 8 1404 729 205 161 150 chr5 107400285 107400373 -45136886 + MTE2a LTR MaLR 290 370 -9 8 1404 377 222 142 25 chr5 107400587 107400707 -45136552 - Lx7 LINE L1 -4 7692 7559 8 1404 815 159 22 0 chr5 107400715 107400853 -45136406 + B1_Mur2 SINE Alu 3 143 -6 8 1404 1835 244 60 42 chr5 107400905 107401406 -45135853 - Lx7 LINE L1 -288 7408 6899 8 1404 362 239 15 30 chr5 107404262 107404377 -45132882 - PB1D10 SINE Alu -2 118 3 8 1404 983 40 0 0 chr5 107405263 107405389 -45131870 + B1_Mus1 SINE Alu 23 148 0 8 1404 473 226 0 25 chr5 107405478 107405596 -45131663 - PB1D9 SINE Alu 0 120 6 8 1404 1169 62 7 0 chr5 107405859 107406005 -45131254 - B1_Mus1 SINE Alu -1 147 1 8 1404 262 93 367 20 chr5 107406037 107406135 -45131124 - B2_Mm2 SINE B2 0 195 64 8 1404 1276 75 45 23 chr5 107406190 107406367 -45130892 - B2_Mm2 SINE B2 -13 182 2 8 1404 549 125 0 0 chr5 107406590 107406678 -45130581 + (T)n Simple_repeat Simple_repeat 1 88 0 8 1404 494 259 0 0 chr5 107408978 107409094 -45128165 - PB1D9 SINE Alu 0 120 5 8 1404 1252 41 0 0 chr5 107409727 107409873 -45127386 + B1_Mus2 SINE Alu 2 147 0 8 1404 339 85 0 0 chr5 107409873 107409920 -45127339 + (A)n Simple_repeat Simple_repeat 1 47 0 8 1404 24 32 0 0 chr5 107410893 107410924 -45126335 + AT_rich Low_complexity Low_complexity 1 31 0 8 1404 390 300 131 39 chr5 107410942 107411202 -45126057 - B4A SINE B4 -6 286 3 8 1404 192 250 0 0 chr5 107411513 107411553 -45125706 - L2c LINE L2 -85 3302 3263 8 1404 549 237 23 15 chr5 107413592 107413725 -45123534 + B1_Mur1 SINE Alu 3 136 -13 8 1404 1536 47 11 0 chr5 107414046 107414237 -45123022 + B2_Mm1t SINE B2 1 193 0 8 1404 273 29 0 0 chr5 107414934 107414968 -45122291 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1404 1353 100 21 0 chr5 107415518 107415708 -45121551 + B2_Mm2 SINE B2 1 194 -1 8 1404 680 237 92 31 chr5 107415720 107415916 -45121343 + B3 SINE B2 9 216 0 8 1404 330 299 26 65 chr5 107416385 107416539 -45120720 - B3 SINE B2 -44 172 25 8 1404 978 47 8 0 chr5 107416552 107416681 -45120578 - B1_Mus1 SINE Alu 0 148 19 8 1404 226 116 0 44 chr5 107416736 107416781 -45120478 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 8 1404 501 185 29 29 chr5 107417497 107417636 -45119623 - Lx9 LINE L1 0 7644 7506 8 1404 563 219 78 0 chr5 107417697 107417825 -45119434 - ID_B1 SINE B4 -3 221 84 8 1404 207 0 0 0 chr5 107418667 107418690 -45118569 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1404 333 269 29 9 chr5 107419286 107419391 -45117868 + B3A SINE B2 1 107 -91 8 1404 22 0 0 0 chr5 107419415 107419437 -45117822 + AT_rich Low_complexity Low_complexity 1 22 0 8 1404 548 229 215 11 chr5 107419510 107419687 -45117572 - B3 SINE B2 -3 213 1 8 1404 252 267 90 54 chr5 107419688 107419799 -45117460 - PB1D10 SINE Alu -2 115 1 8 1404 351 0 0 0 chr5 107421140 107421179 -45116080 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1404 285 29 0 0 chr5 107421179 107421213 -45116046 + (CATA)n Simple_repeat Simple_repeat 2 35 0 8 1404 447 286 130 6 chr5 107421332 107421494 -45115765 - B4 SINE B4 -4 288 107 8 1404 489 138 0 0 chr5 107421502 107421582 -45115677 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 8 1404 603 61 78 12 chr5 107421582 107421749 -45115510 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 8 1404 748 207 14 7 chr5 107421849 107421995 -45115264 - B1_Mur1 SINE Alu -1 148 2 8 1404 881 122 165 87 chr5 107423211 107423245 -45114014 - URR1A DNA MER1_type -4 222 203 8 1404 626 54 11 0 chr5 107423245 107423338 -45113921 - L1_Mus3 LINE L1 -6 6632 6539 8 1404 881 122 165 87 chr5 107423338 107423509 -45113750 - URR1A DNA MER1_type -24 202 1 8 1404 1396 80 11 5 chr5 107424492 107424681 -45112578 - B2_Mm2 SINE B2 -5 190 1 8 1404 236 253 106 68 chr5 107426328 107426489 -45110770 - L1ME1 LINE L1 -2 6177 6011 8 1404 192 125 0 0 chr5 107426525 107426557 -45110702 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1404 262 226 74 21 chr5 107426638 107426733 -45110526 - Lx9 LINE L1 -1761 5883 5784 8 1404 514 311 174 16 chr5 107426722 107427301 -45109958 - L1M4 LINE L1 -847 5299 4629 8 1404 294 29 0 0 chr5 107427302 107427337 -45109922 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 8 1404 218 231 253 0 chr5 107427474 107427565 -45109694 - PB1D10 SINE Alu -1 116 3 8 1404 266 298 39 24 chr5 107427570 107427697 -45109562 - L1M4 LINE L1 -1587 4559 4431 8 1404 3684 76 22 47 chr5 107427752 107428331 -45108928 + MusHAL1 LINE L1 1521 2085 -627 8 1404 718 269 38 0 chr5 107428416 107428576 -45108683 + B3 SINE B2 27 192 -24 8 1404 327 314 51 25 chr5 107428585 107428671 -45108588 - L1M4 LINE L1 -1734 4412 4322 8 1404 757 181 0 20 chr5 107428671 107428823 -45108436 - B1_Mur2 SINE Alu 0 149 1 8 1404 362 256 129 14 chr5 107428823 107429032 -45108227 - L1M4 LINE L1 -1825 4321 4080 8 1404 216 0 0 0 chr5 107429164 107429188 -45108071 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8 1404 25 0 0 0 chr5 107431196 107431221 -45106038 + GC_rich Low_complexity Low_complexity 1 25 0 8 1404 23 54 0 0 chr5 107431488 107431525 -45105734 + AT_rich Low_complexity Low_complexity 1 37 0 8 1404 222 317 77 29 chr5 107431529 107431633 -45105626 + PB1D7 SINE Alu 11 119 -1 8 1404 306 0 0 0 chr5 107431789 107431823 -45105436 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1404 473 0 18 0 chr5 107431825 107431882 -45105377 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1404 247 225 27 40 chr5 107432035 107432109 -45105150 + ID4_ SINE ID 2 74 -9 8 1404 817 129 8 20 chr5 107432733 107432979 -45104280 + (TG)n Simple_repeat Simple_repeat 1 242 0 8 1404 514 176 183 56 chr5 107432979 107433159 -45104100 - B3 SINE B2 -13 203 1 8 1404 276 100 0 0 chr5 107433623 107433663 -45103596 + (TA)n Simple_repeat Simple_repeat 1 40 0 8 1404 1555 210 124 143 chr5 107434435 107435169 -45102090 + RMER6D LTR ERVK 1 720 0 8 1404 231 36 0 0 chr5 107435393 107435421 -45101838 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 8 1404 19131 75 20 5 chr5 107435424 107438724 -45098535 + L1VL4 LINE L1 193 3543 -16 8 1404 236 255 49 14 chr5 107438797 107438879 -45098380 + MIRb SINE MIR 174 260 -2 8 1404 381 250 94 24 chr5 107438888 107439015 -45098244 + PB1D10 SINE Alu 3 138 -11 8 1404 188 103 51 0 chr5 107439038 107439077 -45098182 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 8 1404 552 192 16 23 chr5 107439095 107439223 -45098036 - B3 SINE B2 -1 215 89 8 1404 27 29 0 0 chr5 107439223 107439257 -45098002 + AT_rich Low_complexity Low_complexity 1 34 0 8 1404 241 317 5 11 chr5 107439876 107439966 -45097293 + BC1_Mm scRNA scRNA 2 92 -60 8 1404 237 211 0 95 chr5 107439981 107440044 -45097215 + B1F SINE Alu 2 58 -91 8 1404 330 308 69 0 chr5 107440065 107440195 -45097064 + B1F SINE Alu 5 143 -6 8 1404 375 121 0 0 chr5 107440210 107440268 -45096991 + (TAA)n Simple_repeat Simple_repeat 1 58 0 8 1404 743 211 29 0 chr5 107440444 107440615 -45096644 + B3 SINE B2 3 178 -38 8 1404 396 0 0 0 chr5 107440896 107440940 -45096319 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1404 393 217 25 25 chr5 107441729 107441847 -45095412 - MER33 DNA MER1_type -68 256 139 8 1404 303 173 296 0 chr5 107441924 107442005 -45095254 - B4 SINE B4 -44 248 144 8 1404 426 39 0 0 chr5 107442367 107442419 -45094840 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1404 391 319 94 25 chr5 107442445 107442680 -45094579 - B4A SINE B4 -18 274 24 8 1404 30 45 0 0 chr5 107443112 107443156 -45094103 + AT_rich Low_complexity Low_complexity 1 44 0 8 1404 273 311 22 29 chr5 107443336 107443472 -45093787 - B4 SINE B4 -92 200 66 8 1404 263 258 46 77 chr5 107445172 107445302 -45091957 + L1MC4 LINE L1 7510 7635 -407 8 1404 180 0 0 0 chr5 107445544 107445564 -45091695 + (GA)n Simple_repeat Simple_repeat 1 20 0 8 1404 258 307 0 13 chr5 107446039 107446115 -45091144 + B2_Mm2 SINE B2 1 75 -120 8 1404 230 89 44 0 chr5 107446130 107446175 -45091084 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 8 1404 3028 93 23 11 chr5 107446219 107446656 -45090603 - Lx2 LINE L1 0 6997 6556 8 1404 754 229 78 6 chr5 107446675 107446855 -45090404 - B3A SINE B2 -5 193 1 8 1404 352 279 0 28 chr5 107447005 107447112 -45090147 + PB1D10 SINE Alu 6 109 -8 8 1404 234 161 107 0 chr5 107447114 107447170 -45090089 + ID4 SINE ID 9 70 -13 8 1404 1701 31 0 0 chr5 107447287 107447480 -45089779 + B2_Mm1a SINE B2 1 193 0 8 1404 331 291 70 107 chr5 107447643 107448213 -45089046 + L1MC5 LINE L1 6690 7238 -723 8 1404 351 247 294 31 chr5 107448319 107448482 -45088777 + B3 SINE B2 1 206 -10 8 1404 296 308 0 37 chr5 107449984 107450065 -45087194 + MTEa LTR MaLR 1 78 -301 8 1404 498 228 185 95 chr5 107450065 107450254 -45087005 - MER20 DNA MER1_type -11 208 3 9 1404 182 182 164 0 chr5 107450338 107450393 -45086866 - MIRc SINE MIR -56 212 149 9 1404 486 0 0 0 chr5 107451000 107451054 -45086205 + (TC)n Simple_repeat Simple_repeat 2 55 0 9 1404 187 313 149 46 chr5 107451061 107451148 -45086111 + MIR SINE MIR 48 143 -119 9 1404 273 262 66 51 chr5 107451407 107451544 -45085715 - MLT1A1 LTR MaLR -2 406 268 9 1404 369 0 0 0 chr5 107451850 107451891 -45085368 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1404 747 194 160 0 chr5 107451893 107452037 -45085222 - B3A SINE B2 -30 168 2 9 1404 357 198 30 0 chr5 107452618 107452719 -45084540 + CT-rich Low_complexity Low_complexity 2 105 0 9 1404 661 101 26 26 chr5 107452715 107452868 -45084391 + (TCTCTG)n Simple_repeat Simple_repeat 4 156 0 9 1404 198 0 0 0 chr5 107452868 107452890 -45084369 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1404 330 244 0 24 chr5 107453860 107453944 -45083315 - ID_B1 SINE B4 -1 223 142 9 1404 820 266 0 57 chr5 107453915 107454126 -45083133 - ID_B1 SINE B4 -25 199 1 9 1404 1079 144 20 41 chr5 107455469 107455641 -45081618 + B2_Mm2 SINE B2 1 167 -28 9 1404 360 0 0 0 chr5 107455641 107455681 -45081578 + (CATA)n Simple_repeat Simple_repeat 3 42 0 9 1404 1079 144 20 41 chr5 107455681 107455704 -45081555 + B2_Mm2 SINE B2 168 192 -3 9 1404 218 319 27 27 chr5 107456123 107456197 -45081062 - MIRb SINE MIR -155 113 40 9 1404 466 234 0 0 chr5 107456365 107456459 -45080800 + B3A SINE B2 4 97 -101 9 1404 798 256 30 93 chr5 107456467 107456799 -45080460 - RLTR15 LTR ERVK -16 343 33 9 1404 357 171 33 139 chr5 107456815 107456937 -45080322 + B3A SINE B2 90 198 0 9 1404 285 345 63 59 chr5 107457013 107457235 -45080024 + L2c LINE L2 2333 2555 -864 9 1404 538 185 73 32 chr5 107457274 107457397 -45079862 - MTC LTR MaLR -3 418 291 9 1404 480 138 38 0 chr5 107457376 107457456 -45079803 - B1_Mus1 SINE Alu -65 83 1 9 1404 493 158 20 0 chr5 107457544 107457645 -45079614 + C-rich Low_complexity Low_complexity 1 103 0 9 1404 636 241 177 12 chr5 107458521 107458775 -45078484 + B4 SINE B4 8 292 0 9 1404 1622 222 171 70 chr5 107459422 107459936 -45077323 + RMER2 LTR ERV1 1 566 -1 9 1404 196 296 164 18 chr5 107460262 107460372 -45076887 + L2c LINE L2 2993 3118 -269 9 1404 587 256 114 15 chr5 107460755 107460957 -45076302 + ID_B1 SINE B4 1 222 -2 9 1404 229 317 60 42 chr5 107460968 107461105 -45076154 - ORR1E LTR MaLR -261 147 1 9 1404 334 281 103 30 chr5 107461289 107461454 -45075805 - MER5A DNA MER1_type -12 177 1 9 1404 220 186 0 0 chr5 107461506 107461549 -45075710 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1404 375 308 29 0 chr5 107461566 107461670 -45075589 - B4 SINE B4 -142 150 44 9 1404 7593 100 3 9 chr5 107462347 107463487 -45073772 - L1_Mus2 LINE L1 0 6566 5472 9 1404 213 108 0 0 chr5 107463967 107464004 -45073255 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1404 555 211 0 0 chr5 107464017 107464173 -45073086 + (CA)n Simple_repeat Simple_repeat 2 157 0 9 1404 473 298 55 24 chr5 107464413 107464623 -45072636 - MIRb SINE MIR -29 239 16 9 1404 900 344 71 78 chr5 107465277 107465970 -45071289 - Lx8 LINE L1 -2 7471 6784 9 1404 637 232 18 70 chr5 107466017 107466271 -45070988 + L1M3 LINE L1 5226 5485 -806 9 1404 1433 294 32 79 chr5 107466781 107466908 -45070351 - Lx7 LINE L1 -396 7300 7165 9 1404 3184 53 13 5 chr5 107466908 107467305 -45069954 - MTB LTR MaLR 0 400 1 9 1404 1433 294 32 79 chr5 107467305 107467808 -45069451 - Lx7 LINE L1 -532 7164 6700 9 1404 400 261 11 0 chr5 107467816 107467904 -45069355 + Lx8 LINE L1 6555 6643 -830 9 1404 189 0 0 0 chr5 107467904 107467925 -45069334 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1404 461 336 6 50 chr5 107467964 107468124 -45069135 + B3A SINE B2 45 197 -1 9 1404 273 289 104 9 chr5 107469056 107469171 -45068088 - MLT1L LTR MaLR -290 320 195 9 1404 372 275 104 22 chr5 107469824 107470006 -45067253 - RMER30 DNA MER1_type -1 201 5 9 1404 594 266 107 0 chr5 107470283 107470452 -45066807 + B3A SINE B2 4 190 -8 9 1404 726 194 0 0 chr5 107470452 107470696 -45066563 + (CA)n Simple_repeat Simple_repeat 1 244 0 9 1404 360 178 14 14 chr5 107470697 107470771 -45066488 + HAL1-3A_ME LINE L1 1976 2049 -809 9 1404 291 286 13 13 chr5 107470889 107470967 -45066292 + ID4_ SINE ID 5 82 -1 9 1404 251 241 62 36 chr5 107471199 107471311 -45065948 - MER5A1 DNA MER1_type -30 136 22 9 1404 482 290 95 16 chr5 107472621 107472810 -45064449 + ID_B1 SINE B4 2 205 -19 9 1404 267 335 58 34 chr5 107473859 107474066 -45063193 + MLT2F LTR ERVL 442 653 -10 9 1404 291 296 70 26 chr5 107474978 107475134 -45062125 + L1M5 LINE L1 5603 5765 -359 9 1404 297 265 44 0 chr5 107475174 107475242 -45062017 + B1F1 SINE Alu 16 86 -63 9 1404 307 273 159 43 chr5 107475513 107475651 -45061608 - HAL1-3A_ME LINE L1 -421 2437 2284 9 1404 1637 225 55 10 chr5 107476358 107476757 -45060502 + MTD LTR MaLR 1 417 -2 9 1404 250 400 21 28 chr5 107477151 107477295 -45059964 - MIRb SINE MIR -93 175 33 9 1404 879 223 69 0 chr5 107478258 107478446 -45058813 + ID_B1 SINE B4 17 217 -7 9 1405 210 37 0 0 chr5 107479101 107479128 -45058131 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1405 511 281 48 0 chr5 107479214 107479360 -45057899 - ID_B1 SINE B4 -5 219 67 9 1405 324 0 0 0 chr5 107479538 107479574 -45057685 + (TA)n Simple_repeat Simple_repeat 2 37 0 9 1405 252 0 0 0 chr5 107479576 107479604 -45057655 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1405 243 158 25 50 chr5 107481426 107481506 -45055753 + (CATA)n Simple_repeat Simple_repeat 4 81 0 9 1405 2142 169 39 42 chr5 107481516 107481849 -45055410 - MTC LTR MaLR 0 421 89 9 1405 837 172 7 27 chr5 107481849 107481998 -45055261 - B1_Mur3 SINE Alu -1 148 3 9 1405 2142 169 39 42 chr5 107481998 107482071 -45055188 - MTC LTR MaLR -333 88 17 9 1405 403 294 25 8 chr5 107482108 107482228 -45055031 + RLTR18B LTR ERVK 391 512 0 9 1405 256 277 128 15 chr5 107482229 107482382 -45054877 - MIR SINE MIR -17 251 82 9 1405 518 93 12 0 chr5 107482777 107482863 -45054396 + (CA)n Simple_repeat Simple_repeat 2 88 0 9 1405 402 21 0 0 chr5 107483080 107483127 -45054132 + (TC)n Simple_repeat Simple_repeat 2 48 0 9 1405 256 257 185 50 chr5 107483196 107483315 -45053944 + MLT1A0 LTR MaLR 1 135 -273 9 1405 649 207 26 14 chr5 107483326 107483477 -45053782 + MLT1A0 LTR MaLR 245 467 0 9 1405 342 159 0 0 chr5 107483541 107483610 -45053649 + (CA)n Simple_repeat Simple_repeat 2 70 0 9 1405 866 245 20 5 chr5 107483801 107484002 -45053257 - B3 SINE B2 -11 205 2 9 1405 262 359 52 40 chr5 107484009 107484183 -45053076 + L2c LINE L2 3211 3386 -1 9 1405 1416 229 150 45 chr5 107485560 107486026 -45051233 + RMER15 LTR ERVL 2 516 -59 9 1405 216 0 0 0 chr5 107487073 107487097 -45050162 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 1405 529 316 74 14 chr5 107487289 107487504 -45049755 + MIR SINE MIR 35 262 0 9 1405 452 248 71 95 chr5 107488072 107488120 -45049139 + B4 SINE B4 49 213 -79 9 1405 994 41 0 0 chr5 107488120 107488241 -45049018 + B1_Mus2 SINE Alu 14 134 -13 9 1405 367 240 96 141 chr5 107489018 107489059 -45048200 - B2_Mm2 SINE B2 -5 190 160 9 1405 339 65 0 0 chr5 107489059 107489105 -45048154 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1405 721 235 71 14 chr5 107489105 107489262 -45047997 - B3A SINE B2 -34 164 1 9 1405 1543 191 231 34 chr5 107489522 107489998 -45047261 - RMER4B LTR ERVK -15 570 1 9 1405 1854 132 180 9 chr5 107490082 107490410 -45046849 - ORR1C2 LTR MaLR 0 384 1 9 1405 1056 103 7 20 chr5 107490458 107490607 -45046652 - B1_Mur3 SINE Alu -1 148 2 9 1405 628 230 58 53 chr5 107492192 107492399 -45044860 + ORR1E LTR MaLR 1 208 -151 9 1405 205 300 17 0 chr5 107492828 107492888 -45044371 + GA-rich Low_complexity Low_complexity 4 64 0 9 1405 2503 71 6 6 chr5 107493000 107493327 -45043932 + ORR1A2 LTR MaLR 1 327 0 9 1405 954 110 29 14 chr5 107494827 107494965 -45042294 + B1_Mur3 SINE Alu 2 141 -8 9 1405 183 80 0 0 chr5 107494966 107494991 -45042268 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 9 1405 877 275 31 35 chr5 107495083 107495369 -45041890 + B4A SINE B4 1 285 -7 9 1405 483 320 58 0 chr5 107496181 107496353 -45040906 + B3A SINE B2 3 184 -14 9 1405 369 259 188 48 chr5 107497296 107497568 -45039691 + L1M6 LINE L1 662 971 -5525 9 1405 252 0 0 0 chr5 107497598 107497626 -45039633 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1405 307 304 35 21 chr5 107498180 107498321 -45038938 + L1M6 LINE L1 1728 1870 -4626 9 1405 231 324 68 0 chr5 107498661 107498735 -45038524 + ID SINE ID 5 83 -141 9 1405 332 319 49 21 chr5 107498846 107498990 -45038269 + MLT1L LTR MaLR 349 496 -114 9 1405 533 261 14 71 chr5 107499837 107499998 -45037261 - B3A SINE B2 0 216 57 9 1405 251 196 59 0 chr5 107500000 107500051 -45037208 - B3 SINE B2 -162 54 1 1 1405 411 257 0 29 chr5 107500060 107500164 -45037095 + PB1D9 SINE Alu 19 119 -1 2 1405 231 146 0 40 chr5 107500164 107500214 -45037045 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 1405 660 289 16 37 chr5 107501344 107501531 -45035728 - B4A SINE B4 0 292 110 4 1405 830 232 38 19 chr5 107501609 107501820 -45035439 - B3 SINE B2 -1 215 1 5 1405 2705 87 48 38 chr5 107502107 107502503 -45034756 + MTB LTR MaLR 1 400 0 6 1405 183 156 0 0 chr5 107502952 107502984 -45034275 + GA-rich Low_complexity Low_complexity 1 32 0 7 1405 356 194 21 0 chr5 107503638 107503731 -45033528 + GA-rich Low_complexity Low_complexity 5 99 0 8 1405 513 250 316 20 chr5 107504866 107505222 -45032037 + L1M4 LINE L1 3954 4421 -1725 9 1405 475 327 101 59 chr5 107505228 107505585 -45031674 + L1M4 LINE L1 4336 4707 -1439 9 1405 262 308 99 0 chr5 107505593 107505684 -45031575 + PB1 SINE Alu 11 110 -17 1 1405 695 125 7 22 chr5 107505710 107505849 -45031410 + GA-rich Low_complexity Low_complexity 4 140 0 1 1405 301 340 0 0 chr5 107505965 107506065 -45031194 + L1MC LINE L1 5196 5295 -851 1 1405 481 222 60 0 chr5 107506892 107507009 -45030250 - B1_Mur4 SINE Alu 0 150 27 1 1405 302 327 34 57 chr5 107507009 107507067 -45030192 - ID_B1 SINE B4 0 224 54 1 1405 564 270 96 0 chr5 107507461 107507639 -45029620 + B3A SINE B2 4 198 0 1 1405 1013 150 0 0 chr5 107507671 107507818 -45029441 + B1_Mus2 SINE Alu 1 147 0 1 1405 207 100 0 0 chr5 107507830 107507860 -45029399 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 1 1405 284 360 7 7 chr5 107508695 107508832 -45028427 + C-rich Low_complexity Low_complexity 1 137 0 1 1405 757 239 6 0 chr5 107509607 107509770 -45027489 - B3 SINE B2 -3 213 50 1 1405 207 100 0 0 chr5 107509929 107509959 -45027300 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 2 1405 189 107 0 0 chr5 107510989 107511017 -45026242 + (TA)n Simple_repeat Simple_repeat 2 29 0 2 1405 611 285 7 7 chr5 107511117 107511255 -45026004 - RSINE1 SINE B4 -19 146 9 2 1405 1203 61 0 20 chr5 107512035 107512186 -45025073 + B1_Mus1 SINE Alu 1 148 0 2 1405 266 0 29 0 chr5 107512187 107512221 -45025038 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2 1405 189 171 0 0 chr5 107512229 107512264 -45024995 + GA-rich Low_complexity Low_complexity 6 40 0 2 1405 243 0 0 0 chr5 107512648 107512675 -45024584 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1405 641 270 39 7 chr5 107512729 107512882 -45024377 + RSINE1 SINE B4 6 163 -2 2 1405 225 0 0 0 chr5 107512914 107512939 -45024320 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 1405 888 281 144 29 chr5 107512943 107513386 -45023873 + L1MA4 LINE L1 5431 5924 -376 2 1405 512 298 104 83 chr5 107514128 107514454 -45022805 - MLT1A0 LTR MaLR -32 333 1 3 1405 483 18 0 0 chr5 107514624 107514680 -45022579 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1405 812 87 26 0 chr5 107514680 107514795 -45022464 - B1_Mur4 SINE Alu -32 118 1 3 1405 410 236 0 98 chr5 107514692 107514814 -45022445 - MT2B LTR ERVL -344 257 148 3 1405 619 240 73 0 chr5 107515528 107515678 -45021581 + RSINE1 SINE B4 2 162 -3 3 1405 237 250 150 0 chr5 107515865 107515945 -45021314 - MIR SINE MIR -66 196 105 3 1405 181 303 97 148 chr5 107516897 107516952 -45020307 + L2a LINE L2 3217 3267 -108 3 1405 369 0 0 0 chr5 107516952 107516993 -45020266 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1405 213 261 180 43 chr5 107516993 107517092 -45020167 + L2a LINE L2 3268 3404 -22 3 1405 252 0 0 0 chr5 107517935 107517963 -45019296 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 1405 474 125 0 0 chr5 107518388 107518468 -45018791 + (TGAA)n Simple_repeat Simple_repeat 3 82 0 3 1405 183 47 21 85 chr5 107519638 107519685 -45017574 + T-rich Low_complexity Low_complexity 5 48 0 4 1405 1192 68 0 0 chr5 107519685 107519832 -45017427 - B1_Mm SINE Alu 0 147 1 4 1405 1441 59 16 5 chr5 107519834 107520021 -45017238 - B2_Mm2 SINE B2 -3 192 4 4 1405 267 200 0 0 chr5 107520063 107520118 -45017141 - L1M2 LINE L1 -434 5869 5815 4 1405 297 0 0 0 chr5 107520169 107520202 -45017057 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1405 709 298 44 19 chr5 107520220 107520490 -45016769 - B4A SINE B4 -14 278 2 4 1405 362 307 92 13 chr5 107520490 107520642 -45016617 - L1M2 LINE L1 -496 5795 5632 4 1405 502 294 124 62 chr5 107520822 107521340 -45015919 + L2 LINE L2 2123 2672 -747 4 1405 250 305 0 0 chr5 107521614 107521673 -45015586 - HERV16-int LTR ERVL -3954 1042 984 4 1405 423 0 0 0 chr5 107521689 107521736 -45015523 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1405 389 328 76 110 chr5 107521894 107522195 -45015064 + MLT1E2 LTR MaLR 272 562 -65 4 1405 273 242 62 62 chr5 107522550 107522647 -45014612 - LTR16B LTR ERVL -45 418 322 5 1405 1104 62 0 14 chr5 107523027 107523173 -45014086 + B1_Mus2 SINE Alu 1 144 -3 5 1405 315 0 0 0 chr5 107523173 107523208 -45014051 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1405 566 0 29 0 chr5 107523211 107523280 -45013979 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 5 1405 997 169 113 146 chr5 107523430 107523854 -45013405 + RMER17C LTR ERVK 1 410 0 5 1405 326 210 0 0 chr5 107524019 107524081 -45013178 + ID4 SINE ID 3 64 -19 5 1405 320 329 178 59 chr5 107524092 107524768 -45012491 + L2a LINE L2 2312 3067 -352 5 1405 201 275 159 0 chr5 107524928 107524997 -45012262 + L2a LINE L2 3295 3374 -52 5 1405 232 278 91 100 chr5 107525010 107525350 -45011909 - RMER17C LTR ERVK -59 351 15 5 1405 1369 217 159 49 chr5 107525372 107525683 -45011576 - RMER17C-int LTR ERVK 0 3238 2898 5 1405 246 32 0 0 chr5 107525683 107525714 -45011545 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1405 1369 217 159 49 chr5 107525714 107525930 -45011329 - RMER17C-int LTR ERVK -341 2897 2653 5 1405 334 233 35 11 chr5 107526089 107526176 -45011083 + LSU-rRNA_Hsa rRNA rRNA 4202 4290 -745 5 1405 388 209 7 29 chr5 107526176 107526287 -45010972 - RMER17C-int LTR ERVK -2467 3670 3605 5 1405 315 200 43 0 chr5 107526278 107526348 -45010911 - MYSERV6-int LTR ERVK -183 8776 8704 6 1405 183 288 0 55 chr5 107526538 107526593 -45010666 + L2c LINE L2 3336 3387 0 6 1405 465 261 0 0 chr5 107526666 107526995 -45010264 + (TG)n Simple_repeat Simple_repeat 1 329 0 6 1405 311 136 0 0 chr5 107527015 107527059 -45010200 - HAL1-3A_ME LINE L1 -840 2018 1975 6 1405 252 241 0 0 chr5 107527061 107527119 -45010140 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1405 21 0 0 0 chr5 107528198 107528219 -45009040 + GC_rich Low_complexity Low_complexity 1 21 0 6 1405 878 291 61 61 chr5 107528985 107529344 -45007915 - ORR1E LTR MaLR 0 359 1 6 1405 583 267 74 86 chr5 107530209 107530533 -45006726 + ORR1E LTR MaLR 29 348 -11 6 1405 735 59 0 0 chr5 107531039 107531140 -45006119 + (GA)n Simple_repeat Simple_repeat 1 101 0 6 1405 353 156 15 30 chr5 107531478 107531544 -45005715 - ID4_ SINE ID -18 65 1 6 1405 256 352 0 42 chr5 107532079 107532174 -45005085 + Lx8 LINE L1 7172 7262 -211 7 1405 23 0 0 0 chr5 107532659 107532682 -45004577 + AT_rich Low_complexity Low_complexity 1 23 0 7 1405 202 250 202 48 chr5 107532682 107532766 -45004493 - MIRm SINE MIR -159 117 21 7 1405 286 227 22 11 chr5 107533108 107533190 -45004069 - B1F SINE Alu -23 124 41 7 1405 784 252 33 56 chr5 107533228 107533442 -45003817 - B3 SINE B2 0 216 8 7 1405 572 270 24 0 chr5 107533559 107533685 -45003574 - RSINE1 SINE B4 -35 130 2 7 1405 541 272 88 0 chr5 107534355 107534491 -45002768 - B1F SINE Alu -1 148 1 7 1405 240 35 0 0 chr5 107534602 107534631 -45002628 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1405 22 56 0 0 chr5 107536688 107536724 -45000535 + AT_rich Low_complexity Low_complexity 1 36 0 7 1405 226 82 19 58 chr5 107538921 107538973 -44998286 + T-rich Low_complexity Low_complexity 2 51 0 7 1405 247 328 30 69 chr5 107539104 107539235 -44998024 + RMER30 DNA MER1_type 16 141 -61 8 1405 197 65 0 31 chr5 107539318 107539350 -44997909 + (CCCCG)n Simple_repeat Simple_repeat 1 31 0 8 1405 212 180 157 20 chr5 107540477 107540528 -44996731 - ID4_ SINE ID -20 63 6 8 1405 1023 66 0 0 chr5 107540562 107540698 -44996561 + (CA)n Simple_repeat Simple_repeat 2 137 0 8 1405 536 146 9 0 chr5 107541224 107541251 -44996008 + polypurine Low_complexity Low_complexity 1 27 0 8 1405 447 35 0 0 chr5 107541251 107541308 -44995951 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1405 536 146 9 0 chr5 107541308 107541390 -44995869 + GA-rich Low_complexity Low_complexity 28 110 0 8 1405 307 273 0 13 chr5 107541545 107541623 -44995636 + B4A SINE B4 157 233 -59 8 1405 198 0 0 0 chr5 107542137 107542159 -44995100 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1405 229 236 27 27 chr5 107542161 107542235 -44995024 + HAL1 LINE L1 620 693 -1814 8 1405 552 285 24 0 chr5 107542572 107542695 -44994564 + B1F SINE Alu 13 138 -11 9 1405 991 112 0 27 chr5 107542699 107542883 -44994376 + (CA)n Simple_repeat Simple_repeat 2 180 0 9 1405 304 304 156 49 chr5 107542941 107543269 -44993990 + HAL1 LINE L1 1322 1684 -823 8 1405 279 0 0 0 chr5 107543534 107543565 -44993694 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1405 333 0 0 0 chr5 107543750 107543787 -44993472 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1405 3115 29 0 0 chr5 107543814 107544160 -44993099 + ORR1A0 LTR MaLR 1 346 0 9 1405 1343 118 93 0 chr5 107544204 107544408 -44992851 + URR1A DNA MER1_type 2 224 -2 9 1405 1116 82 18 0 chr5 107544558 107544728 -44992531 + (TG)n Simple_repeat Simple_repeat 2 174 0 9 1405 24 67 0 0 chr5 107546872 107546917 -44990342 + AT_rich Low_complexity Low_complexity 1 45 0 9 1405 658 258 9 62 chr5 107547781 107548008 -44989251 - B3 SINE B2 -1 215 1 9 1405 473 291 44 44 chr5 107548082 107548130 -44989129 + ID_B1 SINE B4 43 221 -2 9 1405 622 225 8 15 chr5 107548130 107548261 -44988998 + B1_Mur1 SINE Alu 15 144 -5 1 1405 253 186 0 132 chr5 107549487 107549555 -44987704 + 4.5SRNA scRNA scRNA 28 86 -8 1 1405 815 96 0 25 chr5 107549498 107549616 -44987643 + B1_Mus2 SINE Alu 33 147 0 1 1405 210 156 0 0 chr5 107549628 107549673 -44987586 + A-rich Low_complexity Low_complexity 1 45 0 1 1405 233 316 13 0 chr5 107550185 107550261 -44986998 + GA-rich Low_complexity Low_complexity 5 81 0 1 1405 677 233 78 0 chr5 107550498 107550678 -44986581 - B3A SINE B2 -4 194 1 1 1405 779 139 70 42 chr5 107550952 107551095 -44986164 + B1_Mur2 SINE Alu 1 147 -2 1 1405 387 244 70 56 chr5 107551704 107551847 -44985412 - MIRc SINE MIR -85 183 39 1 1405 358 177 51 20 chr5 107552010 107552108 -44985151 + MER58B DNA MER1_type 82 182 -159 1 1405 377 307 47 0 chr5 107552595 107552722 -44984537 + B1F SINE Alu 2 134 -15 1 1405 733 310 67 66 chr5 107552740 107553122 -44984137 + MTE2a LTR MaLR 26 419 0 1 1405 1067 219 19 9 chr5 107553199 107553411 -44983848 + B3 SINE B2 1 214 -2 1 1405 233 128 0 0 chr5 107553436 107553475 -44983784 + ID SINE ID 3 41 -183 1 1405 414 0 0 0 chr5 107554442 107554488 -44982771 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1405 373 259 36 27 chr5 107554716 107554827 -44982432 + MER20 DNA MER1_type 39 150 -69 1 1405 687 220 0 0 chr5 107555056 107555174 -44982085 - PB1D9 SINE Alu -1 119 2 1 1405 301 215 8 44 chr5 107556075 107556337 -44980922 + G-rich Low_complexity Low_complexity 1 252 0 1 1405 181 293 69 0 chr5 107556429 107556487 -44980772 + MIRc SINE MIR 33 94 -174 1 1405 204 40 0 0 chr5 107559273 107559298 -44977961 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1405 389 258 20 40 chr5 107559342 107559443 -44977816 - RSINE1 SINE B4 -1 164 66 1 1405 1287 144 18 18 chr5 107563392 107563618 -44973641 + URR1A DNA MER1_type 1 226 0 1 1405 208 290 0 14 chr5 107564392 107564462 -44972797 + GA-rich Low_complexity Low_complexity 1 69 0 1 1405 232 178 0 0 chr5 107564402 107564447 -44972812 + A-rich Low_complexity Low_complexity 1 45 0 1 1405 183 234 41 41 chr5 107565590 107565639 -44971620 + L3 LINE CR1 3429 3477 -1012 1 1405 186 43 0 0 chr5 107566161 107566184 -44971075 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 1 1405 950 96 15 0 chr5 107566192 107566327 -44970932 - B1_Mus1 SINE Alu -2 146 10 1 1405 559 250 7 45 chr5 107566327 107566344 -44970915 - ID_B1 SINE B4 0 221 76 1 1405 1375 76 10 36 chr5 107567099 107567291 -44969968 + B2_Mm1t SINE B2 2 188 -5 1 1405 1228 29 0 0 chr5 107567302 107567440 -44969819 + B1_Mm SINE Alu 1 138 -9 1 1405 209 200 0 0 chr5 107567458 107567498 -44969761 + A-rich Low_complexity Low_complexity 2 41 0 1 1405 259 361 54 9 chr5 107567718 107567875 -44969384 + MIRc SINE MIR 3 163 -45 1 1405 441 311 33 13 chr5 107569874 107570024 -44967235 + MIR3 SINE MIR 8 160 -48 1 1405 218 317 89 82 chr5 107570753 107570911 -44966348 - MIRb SINE MIR -79 189 31 1 1405 244 323 108 0 chr5 107572340 107572433 -44964826 + U6 snRNA snRNA 2 104 -3 1 1405 415 250 7 7 chr5 107573127 107573276 -44963983 + GA-rich Low_complexity Low_complexity 2 150 0 1 1405 634 255 54 0 chr5 107574034 107574183 -44963076 - RSINE1 SINE B4 -6 159 3 1 1405 29 0 0 0 chr5 107575599 107575628 -44961631 + AT_rich Low_complexity Low_complexity 1 29 0 1 1405 270 0 0 0 chr5 107575936 107575966 -44961293 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1405 230 0 33 0 chr5 107575966 107575995 -44961264 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1405 633 239 113 30 chr5 107576214 107576382 -44960877 - B4A SINE B4 -3 289 108 1 1405 459 35 0 0 chr5 107576420 107576477 -44960782 + (CATCC)n Simple_repeat Simple_repeat 4 60 0 1 1405 424 341 29 7 chr5 107576755 107576894 -44960365 - MIRb SINE MIR -121 147 6 1 1405 301 161 18 0 chr5 107578281 107578337 -44958922 + HAL1-3A_ME LINE L1 1976 2032 -826 1 1405 226 219 0 0 chr5 107578736 107578777 -44958482 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1405 979 220 37 18 chr5 107579408 107579626 -44957633 + ID_B1 SINE B4 2 223 -1 1 1405 234 234 76 57 chr5 107579638 107579734 -44957525 + L1_Mur3 LINE L1 5735 5860 -20 1 1405 443 275 46 26 chr5 107581301 107581454 -44955805 - MER5A DNA MER1_type -33 156 1 1 1405 729 277 53 31 chr5 107583817 107584044 -44953215 + MER2 DNA MER2_type 100 331 -14 1 1405 675 190 0 0 chr5 107584848 107584985 -44952274 + (TA)n Simple_repeat Simple_repeat 1 137 0 1 1405 377 220 161 21 chr5 107584997 107585090 -44952169 - PB1D10 SINE Alu -2 115 10 1 1405 545 258 156 31 chr5 107585286 107585446 -44951813 + MER20 DNA MER1_type 1 180 -39 1 1405 233 229 481 35 chr5 107585662 107585768 -44951491 - RSINE1 SINE B4 -12 153 1 1 1405 970 28 0 91 chr5 107586993 107587191 -44950068 + (TTTCC)n Simple_repeat Simple_repeat 1 180 0 1 1405 293 228 0 12 chr5 107587191 107587271 -44949988 + CT-rich Low_complexity Low_complexity 3 81 0 1 1405 390 21 0 0 chr5 107587303 107587350 -44949909 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1405 365 305 0 0 chr5 107587352 107587434 -44949825 - RSINE1 SINE B4 -15 150 69 1 1405 270 81 0 0 chr5 107587476 107587513 -44949746 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1405 1363 53 53 0 chr5 107587513 107587683 -44949576 - B2_Mm2 SINE B2 -16 179 1 1 1405 349 317 45 68 chr5 107588081 107588213 -44949046 - MER21B LTR ERV1 -729 134 6 1 1405 234 0 0 0 chr5 107589316 107589342 -44947917 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1405 26 30 0 0 chr5 107590609 107590642 -44946617 + AT_rich Low_complexity Low_complexity 1 33 0 1 1405 377 262 0 0 chr5 107590921 107591001 -44946258 - ID4_ SINE ID -2 81 2 1 1405 308 64 0 21 chr5 107591105 107591153 -44946106 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1405 730 243 0 13 chr5 107592688 107592838 -44944421 + B1_Mur1 SINE Alu 2 149 0 1 1405 210 37 0 0 chr5 107592891 107592918 -44944341 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1405 239 239 0 11 chr5 107592930 107593019 -44944240 + GA-rich Low_complexity Low_complexity 2 89 0 1 1405 282 354 20 0 chr5 107593746 107593845 -44943414 + MLT2C2 LTR ERVL 459 559 0 1 1405 196 172 73 59 chr5 107594606 107594674 -44942585 + MIRb SINE MIR 98 166 -102 1 1405 231 311 22 44 chr5 107594719 107594821 -44942438 + MIRc SINE MIR 140 232 -30 1 1405 333 0 0 0 chr5 107595168 107595205 -44942054 + (CCCTAA)n Simple_repeat Simple_repeat 4 40 0 1 1405 216 376 21 57 chr5 107597573 107597714 -44939545 - MIR3 SINE MIR -23 185 50 1 1405 581 205 71 24 chr5 107597749 107597919 -44939340 + MER53 DNA hAT 15 192 -1 1 1405 377 325 26 0 chr5 107598272 107598386 -44938873 - PB1D10 SINE Alu 0 117 1 1 1405 254 151 40 14 chr5 107598503 107598577 -44938682 + (TA)n Simple_repeat Simple_repeat 1 76 0 1 1405 395 296 36 57 chr5 107598696 107598836 -44938423 - RSINE1 SINE B4 -25 140 4 1 1405 371 294 88 19 chr5 107599220 107599435 -44937824 - L1MB7 LINE L1 -66 6118 5889 1 1405 237 235 19 38 chr5 107599480 107599566 -44937693 - L1MB7 LINE L1 -408 5771 5684 1 1405 395 268 120 48 chr5 107599587 107599795 -44937464 - L1MB7 LINE L1 -622 5552 5330 1 1405 285 300 89 10 chr5 107599830 107599931 -44937328 - PB1D9 SINE Alu -9 111 3 1 1405 658 245 37 12 chr5 107599931 107600007 -44937252 - ID SINE ID -139 85 6 1 1405 27 0 0 0 chr5 107600316 107600343 -44936916 + AT_rich Low_complexity Low_complexity 1 27 0 1 1405 1345 67 67 0 chr5 107600447 107600627 -44936632 - B2_Mm1t SINE B2 0 193 2 1 1405 249 0 0 0 chr5 107600953 107600985 -44936274 + RLTRETN_Mm LTR ERVK 1 32 -290 1 1405 225 65 0 0 chr5 107601890 107601921 -44935338 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1405 313 192 0 0 chr5 107601922 107601974 -44935285 - ID SINE ID -149 75 24 1 1405 328 349 8 15 chr5 107602005 107602139 -44935120 - ID_B1 SINE B4 -8 216 84 1 1405 377 290 0 11 chr5 107602046 107602140 -44935119 - PB1D10 SINE Alu -23 94 2 1 1405 306 0 0 0 chr5 107602140 107602174 -44935085 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1405 252 0 0 0 chr5 107602437 107602465 -44934794 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1405 434 246 177 16 chr5 107602469 107602593 -44934666 + B1_Mur2 SINE Alu 1 144 -5 1 1405 256 258 106 0 chr5 107602605 107602671 -44934588 + RSINE1 SINE B4 4 76 -89 1 1405 2230 100 13 6 chr5 107602664 107602975 -44934284 + ORR1A2 LTR MaLR 15 327 0 1 1405 275 310 11 54 chr5 107602975 107603065 -44934194 + RSINE1 SINE B4 65 150 -15 1 1405 185 154 26 0 chr5 107603149 107603188 -44934071 + (TA)n Simple_repeat Simple_repeat 1 40 0 1 1405 23 33 0 0 chr5 107603579 107603609 -44933650 + AT_rich Low_complexity Low_complexity 1 30 0 1 1405 1312 56 6 6 chr5 107603905 107604084 -44933175 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1 1405 230 176 0 19 chr5 107604084 107604136 -44933123 + CT-rich Low_complexity Low_complexity 3 53 0 1 1405 243 45 0 62 chr5 107604160 107604208 -44933051 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1405 688 183 143 23 chr5 107604234 107604412 -44932847 - B3 SINE B2 -6 189 2 1 1405 318 278 0 22 chr5 107604443 107604535 -44932724 - L1MC4 LINE L1 -502 7540 7451 1 1405 2053 120 87 128 chr5 107604536 107604733 -44932526 + MTC LTR MaLR 1 210 -211 1 1405 3681 53 18 0 chr5 107604733 107605184 -44932075 + L1_Mus1 LINE L1 6109 6567 0 1 1405 2053 120 87 128 chr5 107605184 107605425 -44931834 + MTC LTR MaLR 211 421 0 1 1405 646 296 84 30 chr5 107605454 107605823 -44931436 - L1MC4 LINE L1 -626 7416 7028 1 1405 207 139 0 0 chr5 107606176 107606212 -44931047 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1405 334 298 48 0 chr5 107606623 107606727 -44930532 + PB1D10 SINE Alu 3 111 -6 2 1405 201 39 0 0 chr5 107606739 107606765 -44930494 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 2 1405 234 0 0 0 chr5 107607408 107607434 -44929825 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1405 653 218 61 0 chr5 107607597 107607744 -44929515 + B3A SINE B2 5 160 -38 2 1405 955 54 7 26 chr5 107609303 107609454 -44927805 + (GAA)n Simple_repeat Simple_repeat 3 150 0 2 1405 281 296 73 12 chr5 107609520 107609602 -44927657 + PB1D10 SINE Alu 14 100 -17 2 175 5059 46 1 35 chr5 107609602 107610252 -44927007 + L1_Mus2 LINE L1 5939 6566 0 2 1406 189 0 0 0 chr5 107610620 107610641 -44926618 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1406 438 232 0 69 chr5 107611312 107611414 -44925845 - B1F1 SINE Alu -54 95 1 2 1406 1261 47 0 0 chr5 107611464 107611612 -44925647 + B1_Mus1 SINE Alu 1 148 0 2 1406 218 81 0 26 chr5 107611613 107611651 -44925608 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2 1406 330 175 16 0 chr5 107613785 107613848 -44923411 + Lx9 LINE L1 7059 7122 -522 2 1406 1428 119 160 8 chr5 107614771 107615034 -44922225 - MTC LTR MaLR -8 413 111 2 1406 1190 108 0 6 chr5 107615035 107615196 -44922063 + B2_Mm2 SINE B2 1 161 -34 2 1406 357 24 0 0 chr5 107615196 107615238 -44922021 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 2 1406 313 117 33 0 chr5 107615258 107615318 -44921941 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1406 391 242 55 0 chr5 107615318 107615409 -44921850 - MTC LTR MaLR -302 119 24 2 1406 778 261 269 24 chr5 107615413 107615706 -44921553 + ORR1E LTR MaLR 13 377 -2 2 1406 1181 68 7 0 chr5 107615754 107615900 -44921359 - B1_Mus1 SINE Alu 0 148 2 2 1406 357 292 121 28 chr5 107615991 107616132 -44921127 + B4A SINE B4 139 292 0 2 1406 629 206 0 8 chr5 107616137 107616388 -44920871 + (CA)n Simple_repeat Simple_repeat 1 248 0 2 1406 26 50 0 0 chr5 107616845 107616885 -44920374 + AT_rich Low_complexity Low_complexity 1 40 0 2 1406 21 0 0 0 chr5 107616939 107616960 -44920299 + AT_rich Low_complexity Low_complexity 1 21 0 2 1406 421 314 120 12 chr5 107617565 107617883 -44919376 + L1MB5 LINE L1 5774 6131 -40 2 1406 671 166 22 22 chr5 107617994 107618173 -44919086 + CT-rich Low_complexity Low_complexity 2 180 0 2 1406 483 18 0 0 chr5 107618226 107618282 -44918977 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1406 1184 49 7 0 chr5 107618350 107618492 -44918767 + B1_Mus2 SINE Alu 4 146 -1 2 1406 297 361 0 12 chr5 107618517 107618601 -44918658 - PB1D10 SINE Alu -34 83 1 2 1406 330 271 47 0 chr5 107618601 107618686 -44918573 + Tigger5 DNA MER2_type 85 173 -2233 2 1406 1029 300 113 14 chr5 107618784 107619139 -44918120 - MLT2B2 LTR ERVL -41 474 85 2 1406 287 200 0 0 chr5 107619135 107619190 -44918069 - B3A SINE B2 -114 84 30 2 1406 402 134 0 0 chr5 107619485 107619552 -44917707 + (T)n Simple_repeat Simple_repeat 1 67 0 2 1406 825 196 0 13 chr5 107619554 107619704 -44917555 - B1_Mur4 SINE Alu -2 148 1 2 1406 818 157 0 22 chr5 107620228 107620365 -44916894 + B1_Mur3 SINE Alu 1 134 -15 2 1406 372 43 0 0 chr5 107621065 107621111 -44916148 + (TC)n Simple_repeat Simple_repeat 2 47 0 2 1406 280 244 14 14 chr5 107621954 107622025 -44915234 + RSINE1 SINE B4 2 72 -220 2 1406 366 161 0 61 chr5 107623109 107623175 -44914084 + ID_B1 SINE B4 163 224 0 2 1406 279 0 0 0 chr5 107623946 107623977 -44913282 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1406 330 26 0 0 chr5 107625553 107625592 -44911667 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 1406 327 256 12 37 chr5 107626294 107626375 -44910884 + RSINE1 SINE B4 2 80 -85 2 1406 227 293 214 24 chr5 107626524 107626650 -44910609 + B4 SINE B4 74 223 -69 2 1406 415 301 0 17 chr5 107626540 107626655 -44910604 + PB1D10 SINE Alu 5 117 0 2 1406 413 290 138 48 chr5 107626747 107627015 -44910244 - L2a LINE L2 -3 3423 3132 2 1406 3364 55 51 0 chr5 107627042 107627246 -44910013 - RLTR10C LTR ERVK 0 436 233 2 1406 234 0 0 0 chr5 107627246 107627272 -44909987 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 1406 3364 55 51 0 chr5 107627272 107627482 -44909777 - RLTR10C LTR ERVK -204 232 2 2 1406 192 402 18 18 chr5 107627498 107627607 -44909652 - L2a LINE L2 -544 2875 2767 2 1406 192 333 121 52 chr5 107627620 107627794 -44909465 - MIR SINE MIR -1 261 76 2 1406 611 290 98 56 chr5 107628128 107628549 -44908710 - MLT1D LTR MaLR -17 488 13 2 1406 244 208 21 0 chr5 107628865 107628961 -44908298 + GA-rich Low_complexity Low_complexity 2 99 0 2 1406 516 288 138 52 chr5 107630073 107630362 -44906897 + ORR1E LTR MaLR 42 355 -4 2 1406 414 295 38 15 chr5 107630364 107630495 -44906764 + RSINE1 SINE B4 4 137 -28 2 1406 384 22 0 0 chr5 107630530 107630575 -44906684 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1406 669 223 65 60 chr5 107632902 107633080 -44904179 + B3 SINE B2 1 183 -33 2 1406 387 0 0 0 chr5 107633080 107633123 -44904136 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1406 669 223 65 60 chr5 107633123 107633159 -44904100 + B3 SINE B2 184 216 0 2 1406 416 303 37 0 chr5 107633264 107633373 -44903886 - PB1 SINE Alu -12 115 3 2 1406 801 244 23 6 chr5 107633535 107633708 -44903551 - MER58A DNA MER1_type -3 221 46 2 1406 527 257 10 46 chr5 107633709 107633934 -44903325 + L1MB7 LINE L1 5750 5949 -235 2 1406 1146 252 66 24 chr5 107634040 107634373 -44902886 - MTE2b LTR MaLR -24 355 9 2 1406 251 241 24 37 chr5 107634391 107634473 -44902786 + L1MB7 LINE L1 6077 6157 -27 2 1406 1164 65 39 0 chr5 107635204 107635357 -44901902 + B2_Mm2 SINE B2 3 161 -34 2 1406 491 276 6 43 chr5 107637627 107637790 -44899469 + RSINE1 SINE B4 4 160 -5 2 1406 641 71 65 22 chr5 107637811 107638046 -44899213 + (TCTA)n Simple_repeat Simple_repeat 1 245 0 2 1406 828 79 55 0 chr5 107638065 107638230 -44899029 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 2 1406 338 303 0 0 chr5 107638248 107638324 -44898935 + ID4_ SINE ID 7 82 -1 2 1406 265 324 71 18 chr5 107640039 107640152 -44897107 + B4 SINE B4 15 133 -159 2 1406 219 186 68 23 chr5 107640585 107640629 -44896630 + RSINE1 SINE B4 82 127 -38 2 1406 389 81 0 16 chr5 107640660 107640723 -44896536 + (CACCC)n Simple_repeat Simple_repeat 3 64 0 2 1406 230 136 23 0 chr5 107640728 107640772 -44896487 + (ATG)n Simple_repeat Simple_repeat 1 45 0 2 1406 198 103 0 0 chr5 107641406 107641435 -44895824 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1406 625 291 92 48 chr5 107641727 107642142 -44895117 - L1MB8 LINE L1 -19 6159 5727 2 1406 201 74 0 0 chr5 107643256 107643283 -44893976 + (G)n Simple_repeat Simple_repeat 1 27 0 2 1406 265 301 52 31 chr5 107643785 107643881 -44893378 + RSINE1 SINE B4 28 125 -40 2 1406 1461 70 37 0 chr5 107644503 107644690 -44892569 - B2_Mm2 SINE B2 0 195 2 2 1406 282 95 0 0 chr5 107645520 107645562 -44891697 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1406 337 313 138 81 chr5 107645712 107646230 -44891029 + LTR48B LTR ERV1 1 588 -56 2 1406 180 200 0 0 chr5 107646990 107647035 -44890224 + GA-rich Low_complexity Low_complexity 2 46 0 2 1406 207 0 0 0 chr5 107647657 107647680 -44889579 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1406 697 232 89 0 chr5 107647803 107647971 -44889288 + B4A SINE B4 110 292 0 2 1406 296 267 160 8 chr5 107648350 107648476 -44888783 + L1ME2z LINE L1 6223 6347 -97 2 1406 481 293 67 82 chr5 107648976 107649184 -44888075 + MLT1J LTR MaLR 81 285 -227 2 1406 271 60 20 20 chr5 107649648 107649699 -44887560 + (TTTTTG)n Simple_repeat Simple_repeat 3 53 0 2 1406 740 286 20 35 chr5 107649706 107649909 -44887350 + ID_B1 SINE B4 3 202 -22 2 1406 316 266 0 12 chr5 107652718 107652798 -44884461 - ID4 SINE ID -2 81 3 2 1406 297 252 19 48 chr5 107653373 107653477 -44883782 + RSINE1 SINE B4 15 115 -50 2 1406 203 105 0 50 chr5 107653568 107653608 -44883651 + A-rich Low_complexity Low_complexity 3 40 0 2 1406 23 0 0 0 chr5 107653974 107653997 -44883262 + AT_rich Low_complexity Low_complexity 1 23 0 2 1406 593 174 128 32 chr5 107654813 107654938 -44882321 + B1_Mur2 SINE Alu 1 137 -12 2 1406 216 146 42 0 chr5 107654938 107654986 -44882273 + (TCTCTG)n Simple_repeat Simple_repeat 5 54 0 2 1406 261 354 52 0 chr5 107655143 107655239 -44882020 + MIR SINE MIR 47 147 -115 2 1406 802 223 91 0 chr5 107656724 107656921 -44880338 - B3 SINE B2 0 216 2 2 1406 402 232 0 0 chr5 107656964 107657076 -44880183 + (TG)n Simple_repeat Simple_repeat 1 112 0 2 1406 1298 259 30 24 chr5 107657808 107658137 -44879122 + MTE2b LTR MaLR 5 335 -44 2 1406 719 254 97 0 chr5 107658911 107659096 -44878163 - B3 SINE B2 -12 204 2 2 1406 400 241 13 0 chr5 107659479 107659558 -44877701 - ID SINE ID -143 81 2 2 1406 1084 114 0 11 chr5 107660656 107660834 -44876425 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 2 1406 309 26 0 0 chr5 107660874 107660912 -44876347 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1406 432 283 62 62 chr5 107660984 107661146 -44876113 - B4A SINE B4 0 292 131 2 1406 438 20 0 0 chr5 107661396 107661447 -44875812 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2 1406 413 222 0 0 chr5 107661462 107661543 -44875716 - ID4_ SINE ID -1 82 2 2 1406 783 272 18 163 chr5 107662201 107662539 -44874720 - B4 SINE B4 0 292 4 2 1406 438 208 0 0 chr5 107662804 107662963 -44874296 + GA-rich Low_complexity Low_complexity 1 159 0 2 1406 432 0 0 0 chr5 107663652 107663700 -44873559 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1406 267 196 0 18 chr5 107663763 107663820 -44873439 - B1F SINE Alu -66 83 28 2 1406 572 303 86 19 chr5 107663865 107664134 -44873125 - B4A SINE B4 -5 287 1 2 1406 267 301 87 47 chr5 107664156 107664306 -44872953 - RSINE1 SINE B4 -6 159 4 3 1406 1152 265 24 21 chr5 107665466 107665755 -44871504 + B4 SINE B4 1 290 -2 3 1406 598 160 0 62 chr5 107666732 107666845 -44870414 + B3A SINE B2 20 125 -73 3 1406 240 35 0 0 chr5 107666869 107666898 -44870361 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1406 253 299 93 90 chr5 107667617 107667896 -44869363 + RMER10B LTR ERVL 12 291 -107 3 1406 209 194 26 53 chr5 107667912 107667988 -44869271 + CT-rich Low_complexity Low_complexity 1 74 0 3 1406 630 319 57 30 chr5 107668500 107668765 -44868494 + B4A SINE B4 21 292 0 3 1406 189 74 0 0 chr5 107668778 107668805 -44868454 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1406 520 268 7 86 chr5 107668956 107669095 -44868164 + B1F SINE Alu 1 128 -21 3 1406 243 23 0 64 chr5 107669104 107669151 -44868108 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1406 351 0 0 0 chr5 107669955 107669994 -44867265 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1406 273 287 205 11 chr5 107670026 107670216 -44867043 - L1MA4A LINE L1 -367 5936 5710 3 1406 23 0 0 0 chr5 107670237 107670260 -44866999 + AT_rich Low_complexity Low_complexity 1 23 0 3 1406 252 250 0 0 chr5 107670587 107670639 -44866620 + ID_B1 SINE B4 116 167 -57 3 1406 245 244 0 22 chr5 107671498 107671590 -44865669 + GA-rich Low_complexity Low_complexity 1 90 0 3 1406 904 114 7 7 chr5 107671600 107671750 -44865509 + (GGAA)n Simple_repeat Simple_repeat 1 150 0 3 1406 257 200 42 14 chr5 107672003 107672074 -44865185 - MIRb SINE MIR -28 240 168 3 1406 587 254 0 0 chr5 107673009 107673119 -44864140 + B1F2 SINE Alu 1 110 -39 3 1406 434 318 108 49 chr5 107673273 107673561 -44863698 + ORR1E LTR MaLR 9 313 -46 3 1406 593 311 48 48 chr5 107674205 107674411 -44862848 + B4A SINE B4 1 206 -86 3 1406 22 0 0 0 chr5 107674417 107674439 -44862820 + GC_rich Low_complexity Low_complexity 1 22 0 3 1406 292 333 0 0 chr5 107674664 107674736 -44862523 - MIR SINE MIR -71 191 120 3 1406 1215 161 0 47 chr5 107675075 107675290 -44861969 + B3 SINE B2 2 206 -10 3 1406 244 220 119 0 chr5 107675549 107675608 -44861651 + ZP3AR Satellite Satellite 20 85 -127 3 1406 374 217 0 0 chr5 107675570 107675639 -44861620 + ID4 SINE ID 6 74 -9 3 1406 1608 47 0 5 chr5 107676164 107676357 -44860902 + B2_Mm1a SINE B2 1 192 -1 3 1406 293 279 0 23 chr5 107676686 107676774 -44860485 + (TA)n Simple_repeat Simple_repeat 1 86 0 3 1406 988 301 33 7 chr5 107676774 107677075 -44860184 - Charlie1a DNA MER1_type -88 1367 1059 3 1406 807 309 134 0 chr5 107677082 107677124 -44860135 - MER2 DNA MER2_type -5 340 298 3 1406 225 0 0 0 chr5 107677124 107677149 -44860110 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 3 1406 807 309 134 0 chr5 107677149 107677404 -44859855 - MER2 DNA MER2_type -48 297 4 3 1406 746 328 104 62 chr5 107677416 107677571 -44859688 - Charlie1a DNA MER1_type -405 1050 879 3 1406 1193 41 0 7 chr5 107677571 107677717 -44859542 + B1_Mus2 SINE Alu 1 145 -2 3 1406 576 0 0 0 chr5 107677724 107677788 -44859471 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1406 746 328 104 62 chr5 107677788 107678208 -44859051 - Charlie1a DNA MER1_type -583 872 443 3 1406 209 57 0 28 chr5 107680041 107680077 -44857182 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 3 1406 277 207 24 0 chr5 107681482 107681564 -44855695 + CT-rich Low_complexity Low_complexity 1 84 0 3 1406 204 40 0 0 chr5 107681613 107681638 -44855621 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1406 533 321 26 57 chr5 107682086 107682350 -44854909 + B4A SINE B4 37 292 0 3 1406 267 133 0 0 chr5 107682356 107682401 -44854858 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1406 275 326 69 45 chr5 107682584 107682786 -44854473 + L2a LINE L2 2963 3169 -257 3 1406 298 186 0 23 chr5 107682789 107682877 -44854382 + (TGGA)n Simple_repeat Simple_repeat 4 89 0 3 1406 182 62 31 0 chr5 107682950 107682982 -44854277 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1406 275 141 31 42 chr5 107683058 107683154 -44854105 + CT-rich Low_complexity Low_complexity 1 95 0 3 1406 279 289 78 0 chr5 107683159 107683249 -44854010 - PB1D10 SINE Alu -9 108 12 3 1406 291 287 58 0 chr5 107683175 107683262 -44853997 - ID_B1 SINE B4 -54 170 79 3 1406 306 313 42 63 chr5 107683278 107683421 -44853838 + L2a LINE L2 3279 3418 -8 3 1406 227 172 46 15 chr5 107684156 107684221 -44853038 + (CA)n Simple_repeat Simple_repeat 1 67 0 3 1406 315 0 0 0 chr5 107684257 107684292 -44852967 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1406 2844 34 6 177 chr5 107684360 107684830 -44852429 + RLTR10 LTR ERVK 1 390 0 3 1406 1534 62 10 0 chr5 107684889 107685084 -44852175 + RLTR10-int LTR ERVK 11 207 -1780 3 1406 704 72 10 10 chr5 107685084 107685182 -44852077 + RLTR10 LTR ERVK 314 411 0 3 1406 6017 29 9 3 chr5 107685182 107685875 -44851384 + RLTR10-int LTR ERVK 302 998 -989 3 1406 376 271 31 8 chr5 107685939 107686069 -44851190 + RLTR10-int LTR ERVK 1462 1594 -5987 3 1406 9051 18 2 0 chr5 107686151 107687147 -44850112 + RLTR10-int LTR ERVK 990 1987 0 3 1406 2844 34 6 177 chr5 107687147 107687617 -44849642 + RLTR10 LTR ERVK 1 390 0 3 1406 500 301 89 0 chr5 107687725 107687871 -44849388 + RSINE1 SINE B4 4 162 -3 3 1406 270 130 185 0 chr5 107688023 107688077 -44849182 - ORR1D1 LTR MaLR 0 374 311 3 1406 1219 172 39 0 chr5 107688095 107688298 -44848961 - ORR1D1 LTR MaLR -161 213 3 3 1406 267 31 0 0 chr5 107688428 107688460 -44848799 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 1406 751 253 71 77 chr5 107688544 107688895 -44848364 + L1MA7 LINE L1 5758 6106 -185 3 1406 461 313 6 89 chr5 107688915 107689094 -44848165 + RSINE1 SINE B4 1 164 -1 3 1406 723 291 0 0 chr5 107689164 107689322 -44847937 + RSINE1 SINE B4 2 159 -6 3 1406 21 0 0 0 chr5 107689398 107689419 -44847840 + AT_rich Low_complexity Low_complexity 1 21 0 3 1406 205 138 0 0 chr5 107689791 107689820 -44847439 + (G)n Simple_repeat Simple_repeat 1 29 0 3 1406 187 267 99 55 chr5 107689893 107689984 -44847275 + MIRb SINE MIR 104 198 -70 3 1406 268 300 40 14 chr5 107691192 107691303 -44845956 + MIRc SINE MIR 47 158 -118 3 1406 566 165 8 0 chr5 107691314 107691441 -44845818 + (CA)n Simple_repeat Simple_repeat 2 129 0 3 1406 369 329 19 45 chr5 107691733 107691750 -44845509 + ID_B1 SINE B4 65 216 -8 3 1406 748 203 14 7 chr5 107691750 107691889 -44845370 + B1_Mur2 SINE Alu 2 141 -8 3 1406 195 355 31 31 chr5 107691997 107692093 -44845166 + MIR SINE MIR 67 162 -100 3 1406 254 270 0 42 chr5 107692101 107692244 -44845015 + ORR1B1-int LTR MaLR 618 754 -755 3 1406 627 193 27 33 chr5 107692128 107692145 -44845114 + ID_B1 SINE B4 70 218 -6 3 1406 1111 30 0 0 chr5 107692145 107692278 -44844981 + B1_Mus2 SINE Alu 9 141 -6 3 1406 516 32 0 0 chr5 107692278 107692340 -44844919 + (GAAA)n Simple_repeat Simple_repeat 2 63 0 3 1406 562 294 123 0 chr5 107692480 107692643 -44844616 + ID_B1 SINE B4 1 183 -41 3 1406 959 221 37 130 chr5 107692765 107692920 -44844339 + B4 SINE B4 5 133 -159 3 1406 1404 77 0 35 chr5 107692920 107693121 -44844138 + B2_Mm2 SINE B2 1 194 -1 3 1406 959 219 36 128 chr5 107693121 107693282 -44843977 + B4 SINE B4 134 292 0 3 1406 273 29 0 0 chr5 107693296 107693330 -44843929 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1406 539 261 0 0 chr5 107693731 107693850 -44843409 + PB1D9 SINE Alu 2 120 0 3 1406 609 82 0 0 chr5 107694596 107694693 -44842566 + (TC)n Simple_repeat Simple_repeat 1 97 0 3 1406 443 279 18 9 chr5 107695605 107695717 -44841542 - PB1 SINE Alu -10 117 5 3 1406 211 28 56 0 chr5 107695935 107695971 -44841288 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1406 338 136 0 12 chr5 107696178 107696260 -44840999 + (TG)n Simple_repeat Simple_repeat 1 81 0 3 1406 747 167 30 0 chr5 107696260 107696392 -44840867 - B1_Mur1 SINE Alu -4 145 10 3 1406 439 289 7 40 chr5 107696261 107696409 -44840850 - ID_B1 SINE B4 -5 219 77 3 1406 396 139 0 0 chr5 107696481 107696560 -44840699 + (GA)n Simple_repeat Simple_repeat 1 79 0 3 1406 22 0 0 0 chr5 107697326 107697348 -44839911 + AT_rich Low_complexity Low_complexity 1 22 0 3 1406 826 133 6 6 chr5 107698255 107698429 -44838830 + (TG)n Simple_repeat Simple_repeat 1 174 0 3 1406 456 175 24 0 chr5 107698471 107698597 -44838662 + (TG)n Simple_repeat Simple_repeat 2 130 0 3 1406 24 0 0 0 chr5 107698616 107698640 -44838619 + AT_rich Low_complexity Low_complexity 1 24 0 3 1406 378 223 19 0 chr5 107698640 107698797 -44838462 + (TG)n Simple_repeat Simple_repeat 1 160 0 3 1406 310 290 47 88 chr5 107698821 107698991 -44838268 - RSINE1 SINE B4 0 165 3 3 1406 1271 41 0 0 chr5 107699194 107699341 -44837918 + B1_Mus2 SINE Alu 1 147 0 3 1406 204 125 0 0 chr5 107699341 107699373 -44837886 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1406 327 104 0 0 chr5 107699550 107699598 -44837661 + (TAA)n Simple_repeat Simple_repeat 2 49 0 3 1406 182 314 160 32 chr5 107699700 107699825 -44837434 - MIRc SINE MIR -123 145 5 3 1406 2993 176 83 12 chr5 107700102 107700666 -44836593 + RMER1A Other Other 422 1025 -5 3 1406 21 0 0 0 chr5 107700699 107700720 -44836539 + AT_rich Low_complexity Low_complexity 1 21 0 3 1406 273 258 25 0 chr5 107700732 107700852 -44836407 + (TG)n Simple_repeat Simple_repeat 2 124 0 3 1406 462 288 93 27 chr5 107700859 107701009 -44836250 - RSINE1 SINE B4 0 165 6 3 1406 717 270 32 18 chr5 107701052 107701271 -44835988 + ID_B1 SINE B4 2 223 -1 3 1406 439 311 56 75 chr5 107701346 107701506 -44835753 + RSINE1 SINE B4 8 164 -1 3 1406 222 118 0 0 chr5 107701584 107701618 -44835641 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 3 1406 268 355 75 0 chr5 107701934 107702027 -44835232 - L2a LINE L2 -8 3418 3319 3 1406 344 283 89 38 chr5 107702323 107702481 -44834778 - MTE2a LTR MaLR -114 265 100 3 1406 276 163 0 58 chr5 107702821 107702873 -44834386 - B2_Mm2 SINE B2 -100 95 47 3 1406 379 265 28 47 chr5 107702863 107702905 -44834354 - ID_B1 SINE B4 -17 207 167 3 1406 955 126 132 0 chr5 107702905 107703064 -44834195 - B2_Mm2 SINE B2 -14 181 2 3 1406 379 265 28 47 chr5 107703064 107703128 -44834131 - ID_B1 SINE B4 -58 166 103 3 1406 939 47 8 0 chr5 107703277 107703406 -44833853 + L1Md_T LINE L1 6453 6582 0 3 1406 381 345 34 54 chr5 107703448 107703595 -44833664 + RSINE1 SINE B4 3 146 -19 3 1406 252 0 0 0 chr5 107703598 107703626 -44833633 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1406 243 0 0 0 chr5 107703634 107703661 -44833598 + (CAAG)n Simple_repeat Simple_repeat 1 27 0 4 1406 393 306 8 126 chr5 107703671 107703798 -44833461 + B1F2 SINE Alu 1 113 -36 4 1406 379 239 82 35 chr5 107704091 107704271 -44832988 - MTD LTR MaLR -11 408 196 4 1406 1311 81 26 21 chr5 107704265 107704293 -44832966 - B2_Mm2 SINE B2 -4 191 162 4 1406 213 39 0 0 chr5 107704293 107704319 -44832940 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 4 1406 1311 81 26 21 chr5 107704319 107704479 -44832780 - B2_Mm2 SINE B2 -34 161 2 4 1406 438 286 24 0 chr5 107704479 107704594 -44832665 - MTD LTR MaLR -205 214 97 4 1406 936 191 326 62 chr5 107704604 107704908 -44832351 + ORR1C2 LTR MaLR 1 384 0 4 1406 237 289 13 38 chr5 107704960 107705039 -44832220 + ID4 SINE ID 14 90 -62 4 1406 351 0 0 0 chr5 107705555 107705594 -44831665 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1406 207 0 0 0 chr5 107705594 107705616 -44831643 + (GA)n Simple_repeat Simple_repeat 2 24 0 4 1406 360 247 53 11 chr5 107706075 107706169 -44831090 - MIR SINE MIR -154 108 11 4 1406 237 350 101 58 chr5 107706359 107706547 -44830712 - L2b LINE L2 0 3375 3180 4 1406 279 0 0 0 chr5 107706753 107706784 -44830475 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 4 1406 2764 96 0 33 chr5 107706814 107707235 -44830024 + L1Md_F2 LINE L1 6176 6582 0 4 1406 1488 63 11 0 chr5 107707449 107707638 -44829621 - B2_Mm1t SINE B2 -2 191 1 4 1406 345 219 82 10 chr5 107707912 107708009 -44829250 + RSINE1 SINE B4 5 108 -57 4 1406 479 216 72 0 chr5 107708104 107708215 -44829044 + PB1D7 SINE Alu 1 119 -1 4 1406 226 295 73 45 chr5 107708760 107708870 -44828389 - L2a LINE L2 0 3426 3314 4 1406 261 323 10 40 chr5 107709188 107709288 -44827971 + MTEa LTR MaLR 269 365 -14 4 1406 1879 84 133 7 chr5 107709412 107709698 -44827561 + ORR1A3 LTR MaLR 1 322 -4 4 1406 4723 128 65 58 chr5 107710066 107710903 -44826356 + RMER21B LTR ERV1 1 842 0 4 1406 225 65 0 0 chr5 107711575 107711606 -44825653 + (GA)n Simple_repeat Simple_repeat 2 32 0 4 1406 641 275 7 0 chr5 107713925 107714067 -44823192 - ID_B1 SINE B4 0 224 82 4 1406 22 0 0 0 chr5 107714428 107714450 -44822809 + GC_rich Low_complexity Low_complexity 1 22 0 4 1406 292 300 0 12 chr5 107714838 107714919 -44822340 + ID4_ SINE ID 1 80 -3 4 1406 790 95 0 33 chr5 107715504 107715624 -44821635 - B1_Mur3 SINE Alu 0 149 34 4 1406 1193 48 14 0 chr5 107715683 107715828 -44821431 + B1_Mus1 SINE Alu 2 148 0 4 1406 224 0 65 0 chr5 107715833 107715864 -44821395 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 4 1406 263 225 20 101 chr5 107717107 107717206 -44820053 + MIRb SINE MIR 88 178 -90 4 1406 203 61 30 0 chr5 107718690 107718723 -44818536 + (TCC)n Simple_repeat Simple_repeat 1 34 0 4 1406 420 321 29 58 chr5 107719388 107719527 -44817732 + ID_B1 SINE B4 6 140 -84 4 1406 389 264 112 52 chr5 107719512 107719628 -44817631 - RSINE1 SINE B4 -37 128 6 4 1406 4403 162 57 66 chr5 107719765 107720675 -44816584 - RMER19B LTR ERVK 0 902 1 4 1406 385 254 47 54 chr5 107720767 107720896 -44816363 - ID_B1 SINE B4 -3 221 94 4 1406 351 237 62 69 chr5 107720896 107720908 -44816351 - B1F SINE Alu -1 144 5 4 1406 298 255 119 29 chr5 107721005 107721215 -44816044 + L1M2 LINE L1 5064 5292 -851 4 1406 396 233 119 23 chr5 107721283 107721459 -44815800 + L1M2 LINE L1 5361 5553 -747 4 1406 755 163 13 45 chr5 107721492 107721646 -44815613 + URR1B DNA MER1_type 77 225 0 4 1406 431 216 42 59 chr5 107721670 107721788 -44815471 - PB1D10 SINE Alu -1 116 1 4 1406 697 189 45 45 chr5 107721788 107721853 -44815406 - ID SINE ID -145 79 15 4 1406 1008 239 57 98 chr5 107722003 107722389 -44814870 + ORR1D2 LTR MaLR 1 370 0 4 1406 1431 85 0 5 chr5 107722836 107723025 -44814234 + B2_Mm2 SINE B2 2 189 -6 4 1406 21 36 0 0 chr5 107723056 107723084 -44814175 + AT_rich Low_complexity Low_complexity 1 28 0 4 1406 335 317 69 0 chr5 107723422 107723523 -44813736 - RSINE1 SINE B4 -54 111 4 4 1406 299 274 49 0 chr5 107723638 107723740 -44813519 - ID_B1 SINE B4 0 224 118 4 1406 426 20 0 0 chr5 107723969 107724020 -44813239 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 4 1406 388 283 201 6 chr5 107724056 107724230 -44813029 - Lx9 LINE L1 -207 7437 7230 4 1406 724 284 9 19 chr5 107724649 107724861 -44812398 + ID_B1 SINE B4 2 211 -13 4 1406 486 0 0 0 chr5 107725107 107725161 -44812098 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1406 572 242 0 29 chr5 107726304 107726440 -44810819 - ID_B1 SINE B4 -1 223 92 4 1406 180 0 0 0 chr5 107726531 107726551 -44810708 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 4 1406 196 338 14 0 chr5 107726875 107726946 -44810313 + L2 LINE L2 999 1070 -2349 4 1406 214 330 53 0 chr5 107727077 107727171 -44810088 + PB1D7 SINE Alu 1 99 -21 4 1406 351 65 0 0 chr5 107727171 107727217 -44810042 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1406 738 191 84 11 chr5 107727218 107727409 -44809850 + Lx9 LINE L1 7416 7620 -24 4 1406 389 231 0 0 chr5 107728177 107728255 -44809004 - ID4_ SINE ID -3 80 3 4 1406 207 0 0 0 chr5 107728273 107728296 -44808963 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1406 447 232 57 63 chr5 107728303 107728478 -44808781 + L1MA7 LINE L1 6002 6175 -116 4 1406 515 184 39 0 chr5 107728486 107728589 -44808670 + PB1D10 SINE Alu 11 117 0 4 1406 294 216 0 13 chr5 107728604 107728679 -44808580 + L1MA7 LINE L1 6201 6274 -17 4 1406 395 301 44 22 chr5 107728758 107728894 -44808365 + B1F1 SINE Alu 11 149 0 4 1406 5521 35 3 6 chr5 107728930 107729584 -44807675 - L1Md_F3 LINE L1 0 6584 5933 4 1406 1085 102 0 26 chr5 107730551 107730702 -44806557 + B1_Mus2 SINE Alu 1 147 0 4 1406 357 165 266 35 chr5 107730896 107731009 -44806250 - ID_B1 SINE B4 0 224 86 4 1406 348 228 93 29 chr5 107731386 107731526 -44805733 - B1F1 SINE Alu 0 149 1 4 1406 713 111 86 106 chr5 107731599 107731750 -44805509 + B1_Mus1 SINE Alu 1 148 0 4 1406 464 226 0 10 chr5 107731961 107732064 -44805195 + U6 snRNA snRNA 4 105 -2 4 1406 32 0 0 0 chr5 107732064 107732096 -44805163 + AT_rich Low_complexity Low_complexity 1 32 0 4 1406 382 161 0 0 chr5 107733311 107733373 -44803886 - RSINE1 SINE B4 -35 130 69 4 1406 26 30 0 0 chr5 107733746 107733779 -44803480 + AT_rich Low_complexity Low_complexity 1 33 0 4 1406 257 314 19 63 chr5 107733888 107733909 -44803350 - YREP_Mm Unknown Unknown -1474 338 277 4 1406 672 250 7 0 chr5 107733909 107734053 -44803206 + ID_B1 SINE B4 79 223 -1 4 1406 257 314 19 63 chr5 107734053 107734095 -44803164 - YREP_Mm Unknown Unknown -1474 276 141 4 1406 334 198 93 0 chr5 107734104 107734190 -44803069 - L1MB1 LINE L1 -85 6083 5990 4 1406 348 121 0 33 chr5 107734196 107734256 -44803003 - HAL1-3A_ME LINE L1 -825 2033 1976 4 1406 225 290 0 0 chr5 107734298 107734429 -44802830 + (TG)n Simple_repeat Simple_repeat 2 132 0 4 1406 456 231 58 58 chr5 107734762 107734969 -44802290 - 7SK RNA RNA -94 237 31 4 1406 534 222 9 0 chr5 107735133 107735241 -44802018 + ID_B1 SINE B4 105 213 -11 4 1406 244 329 40 0 chr5 107735913 107735989 -44801270 + B1F2 SINE Alu 1 79 -70 4 1406 210 37 0 0 chr5 107735999 107736026 -44801233 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1406 272 105 35 0 chr5 107736031 107736088 -44801171 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 4 1406 258 198 132 24 chr5 107736088 107736171 -44801088 - RSINE1 SINE B4 -38 127 36 4 1406 227 162 0 0 chr5 107736532 107736569 -44800690 - ID_B1 SINE B4 -29 195 159 4 1406 216 67 0 0 chr5 107737742 107737772 -44799487 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1406 243 309 0 0 chr5 107738317 107738385 -44798874 - ID4_ SINE ID -12 71 4 4 1406 393 250 45 11 chr5 107738426 107738565 -44798694 + PB1D9 SINE Alu 9 150 0 4 1406 1258 27 0 0 chr5 107739019 107739165 -44798094 - B1_Mus2 SINE Alu 0 147 2 4 1406 21 36 0 0 chr5 107739273 107739301 -44797958 + AT_rich Low_complexity Low_complexity 1 28 0 4 1406 393 219 46 12 chr5 107739319 107739430 -44797829 + B1_Mur2 SINE Alu 3 118 -2 4 1406 2518 127 23 38 chr5 107739434 107739744 -44797515 - Lx2B LINE L1 -903 6097 5797 4 1406 1356 97 5 0 chr5 107739744 107739930 -44797329 - B2_Mm1t SINE B2 -5 188 2 4 1406 2518 127 23 38 chr5 107739930 107740046 -44797213 - Lx2B LINE L1 -1204 5796 5677 4 1406 10031 144 16 68 chr5 107740046 107740210 -44797049 - L1_Mur2 LINE L1 0 5877 5785 4 1406 1232 41 0 0 chr5 107740210 107740356 -44796903 - B1_Mus2 SINE Alu 0 147 2 4 175 10031 144 16 68 chr5 107740356 107742067 -44795192 - L1_Mur2 LINE L1 -93 5784 4098 4 1407 1228 85 0 95 chr5 107742070 107742291 -44794968 + Lx2B LINE L1 6106 6305 -695 4 1407 1604 106 39 0 chr5 107742291 107742546 -44794713 + ORR1A2 LTR MaLR 54 318 -9 4 1407 4882 95 13 6 chr5 107742547 107742960 -44794299 + Lx2B LINE L1 6317 6730 -270 4 1407 531 82 0 0 chr5 107742960 107743033 -44794226 + (TA)n Simple_repeat Simple_repeat 2 74 0 4 1407 4882 95 13 6 chr5 107743033 107743294 -44793965 + Lx2B LINE L1 6731 6995 -5 4 1407 2098 164 76 10 chr5 107743317 107743712 -44793547 - MTC LTR MaLR 0 421 1 4 1407 453 36 0 0 chr5 107744776 107744831 -44792428 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 4 1407 705 135 124 23 chr5 107744839 107744968 -44792291 - B1_Mur2 SINE Alu -2 147 6 4 1407 262 359 46 15 chr5 107745346 107745476 -44791783 + B4 SINE B4 65 198 -94 4 1407 707 215 15 0 chr5 107745377 107745507 -44791752 + B1F SINE Alu 11 142 -7 4 1407 407 275 30 15 chr5 107745516 107745649 -44791610 + B4A SINE B4 1 135 -157 4 1407 294 329 26 32 chr5 107745869 107746023 -44791236 - RMER15 LTR ERVL -76 499 347 4 1407 345 274 21 0 chr5 107746497 107746592 -44790667 + ID_B1 SINE B4 1 97 -127 5 1407 466 277 32 0 chr5 107746615 107746770 -44790489 - MTD LTR MaLR -14 405 246 5 1407 822 115 7 14 chr5 107746809 107746950 -44790309 + URR1B DNA MER1_type 86 225 0 5 1407 665 236 219 9 chr5 107746950 107747159 -44790100 - MTD LTR MaLR -166 253 1 5 1407 296 189 203 0 chr5 107747159 107747228 -44790031 + ID_B1 SINE B4 103 186 -38 5 1407 3162 240 115 35 chr5 107747728 107748836 -44788423 - Lx8 LINE L1 -8 7465 6270 5 1407 262 322 11 0 chr5 107749218 107749308 -44787951 + B1_Mus2 SINE Alu 5 95 -52 5 1407 1573 89 13 4 chr5 107749587 107749852 -44787407 + L1_Mus3 LINE L1 6389 6638 0 5 1407 7670 94 15 28 chr5 107750111 107751437 -44785822 - Lx LINE L1 0 6654 5337 5 1407 16294 142 7 12 chr5 107751438 107754219 -44783040 + L1_Mur1 LINE L1 1559 4325 -1561 5 1407 484 234 144 21 chr5 107754219 107754455 -44782804 - RLTR10A LTR ERVK 0 411 147 5 1407 754 122 26 0 chr5 107754508 107754636 -44782623 + L1_Mur1 LINE L1 4311 4467 -1673 5 1407 7066 129 15 2 chr5 107754651 107755704 -44781555 + Lx LINE L1 5588 6654 0 5 1407 2182 131 20 0 chr5 107755700 107756051 -44781208 + Lx4A LINE L1 3707 4064 -1813 5 1407 7987 136 86 34 chr5 107756044 107757304 -44779955 + Lx4A LINE L1 5528 6860 -198 5 1407 6669 67 41 1 chr5 107757304 107758187 -44779072 - Lx3_Mus LINE L1 -1 7008 6091 5 1407 7987 135 80 36 chr5 107758187 107758276 -44778983 + Lx4A LINE L1 6861 6930 -128 5 1407 279 0 0 0 chr5 107758276 107758307 -44778952 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1407 7987 135 80 36 chr5 107758307 107758416 -44778843 + Lx4A LINE L1 6931 7055 -3 5 1407 1010 108 17 11 chr5 107758416 107758594 -44778665 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 5 1407 436 211 163 0 chr5 107758876 107758999 -44778260 + B1_Mur1 SINE Alu 6 148 -1 5 1407 711 52 270 0 chr5 107759182 107759297 -44777962 - B1_Mus2 SINE Alu 0 147 2 5 1407 483 211 97 83 chr5 107759340 107759485 -44777774 + B1_Mur3 SINE Alu 3 149 0 5 1407 427 196 43 26 chr5 107759653 107759768 -44777491 + RSINE1 SINE B4 3 119 -46 5 1407 254 253 193 0 chr5 107761053 107761136 -44776123 - PB1D7 SINE Alu -20 100 2 5 1407 655 202 0 0 chr5 107761638 107761757 -44775502 + ID_B1 SINE B4 85 203 -21 5 1407 207 0 0 0 chr5 107761790 107761813 -44775446 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 5 1407 622 267 46 41 chr5 107762629 107762824 -44774435 - B3A SINE B2 -2 196 1 5 1407 447 290 117 44 chr5 107762827 107763101 -44774158 - L1M3 LINE L1 -780 5360 5067 5 1407 9178 172 55 39 chr5 107763092 107763905 -44773354 - Lx7 LINE L1 -1780 5916 5109 5 1407 1178 62 0 0 chr5 107763905 107764049 -44773210 - B1_Mus1 SINE Alu -4 144 1 5 1407 9178 171 51 39 chr5 107764049 107765240 -44772019 - Lx7 LINE L1 -772 5108 3894 5 1407 309 89 0 0 chr5 107765754 107765799 -44771460 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1407 513 242 196 38 chr5 107765804 107766044 -44771215 - B4 SINE B4 -14 278 1 5 1407 579 243 144 0 chr5 107766082 107766255 -44771004 - B3A SINE B2 0 198 1 5 1407 245 257 26 51 chr5 107766271 107766349 -44770910 + MER3 DNA MER1_type 35 110 -99 5 1407 342 182 45 15 chr5 107766422 107766489 -44770770 - ID4 SINE ID -14 69 1 5 1407 449 301 123 0 chr5 107766577 107766723 -44770536 + RSINE1 SINE B4 2 165 0 5 1407 398 257 40 0 chr5 107766942 107767043 -44770216 + PB1D7 SINE Alu 11 115 -5 5 1407 250 286 16 0 chr5 107767043 107767106 -44770153 + GA-rich Low_complexity Low_complexity 1 64 0 5 1407 342 308 90 58 chr5 107767201 107767356 -44769903 + ID_B1 SINE B4 65 224 0 5 1407 180 0 0 0 chr5 107767365 107767385 -44769874 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1407 346 257 25 42 chr5 107767898 107768016 -44769243 + PB1D7 SINE Alu 5 120 0 5 1407 1216 21 0 7 chr5 107768208 107768349 -44768910 + B1_Mm SINE Alu 2 141 -6 5 1407 325 314 82 55 chr5 107768559 107768741 -44768518 + B3A SINE B2 1 187 -11 5 1407 411 347 11 70 chr5 107768763 107768949 -44768310 + ID_B1 SINE B4 1 175 -49 5 1407 28 29 0 0 chr5 107769013 107769048 -44768211 + AT_rich Low_complexity Low_complexity 1 35 0 5 1407 684 216 42 21 chr5 107769050 107769192 -44768067 + RSINE1 SINE B4 5 149 -16 5 1407 189 107 0 0 chr5 107769192 107769220 -44768039 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1407 229 261 62 0 chr5 107769233 107769298 -44767961 + L1MB2 LINE L1 5894 5962 -209 5 1407 328 164 0 82 chr5 107769992 107770065 -44767194 - RSINE1 SINE B4 0 165 99 5 1407 21 36 0 0 chr5 107770154 107770182 -44767077 + AT_rich Low_complexity Low_complexity 1 28 0 5 1407 846 214 14 0 chr5 107770561 107770706 -44766553 - B1_Mur1 SINE Alu 0 149 3 5 1407 392 240 18 99 chr5 107770753 107770864 -44766395 + PB1D10 SINE Alu 9 110 -7 5 1407 289 164 15 15 chr5 107770892 107770960 -44766299 + B1F SINE Alu 82 149 0 5 1407 447 265 63 44 chr5 107771370 107771528 -44765731 - RSINE1 SINE B4 -2 163 3 5 1407 478 94 3 0 chr5 107771922 107771997 -44765262 + Lx3_Mus LINE L1 5594 5669 -2027 5 1407 446 273 8 15 chr5 107772001 107772131 -44765128 - RSINE1 SINE B4 -6 159 31 5 1407 248 185 73 44 chr5 107772364 107772432 -44764827 - ID4_ SINE ID -9 74 5 5 1407 327 281 0 0 chr5 107772457 107772539 -44764720 - ID4 SINE ID -1 82 1 5 1407 220 250 18 0 chr5 107772865 107772921 -44764338 - B1F SINE Alu -92 57 1 5 1407 394 281 56 32 chr5 107772987 107773112 -44764147 - RSINE1 SINE B4 -35 130 3 5 1407 311 244 24 0 chr5 107773267 107773349 -44763910 + PB1D7 SINE Alu 36 119 -1 5 1407 1049 72 58 0 chr5 107773804 107773943 -44763316 - B1_Mus1 SINE Alu 0 148 2 5 1407 1186 48 14 0 chr5 107774704 107774849 -44762410 - B1_Mm SINE Alu 0 147 1 5 1407 250 314 68 10 chr5 107774872 107774975 -44762284 - PB1D10 SINE Alu -8 109 1 5 1407 581 240 84 0 chr5 107775370 107775524 -44761735 - B3 SINE B2 -49 167 1 5 1407 357 359 7 27 chr5 107775581 107775727 -44761532 - ID_B1 SINE B4 -7 217 75 5 1407 596 251 122 33 chr5 107775746 107775927 -44761332 - B3A SINE B2 0 198 2 5 1407 216 0 0 0 chr5 107775933 107775957 -44761302 + (TTGTG)n Simple_repeat Simple_repeat 4 27 0 5 1407 379 287 0 50 chr5 107776066 107776187 -44761072 - PB1D10 SINE Alu 0 117 3 5 1407 252 309 100 11 chr5 107776317 107776510 -44760749 - L1_Mur1 LINE L1 -559 5619 5387 5 1407 359 250 67 15 chr5 107776513 107776647 -44760612 - B1F SINE Alu -8 141 1 5 1407 580 241 46 42 chr5 107776674 107776891 -44760368 - B3A SINE B2 0 216 1 5 1407 224 351 0 0 chr5 107777664 107777738 -44759521 + (CGTG)n Simple_repeat Simple_repeat 2 75 0 5 1407 651 240 114 5 chr5 107777762 107777946 -44759313 - B4A SINE B4 -60 232 29 5 1407 296 292 66 14 chr5 107778062 107778207 -44759052 - B3A SINE B2 -2 214 68 5 1407 323 96 19 0 chr5 107778322 107778374 -44758885 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 5 1407 1121 81 0 26 chr5 107778374 107778526 -44758733 - B1_Mus1 SINE Alu 0 148 1 5 1407 281 262 165 8 chr5 107778562 107778689 -44758570 + B1F1 SINE Alu 3 149 0 5 1407 296 229 0 121 chr5 107780173 107780297 -44756962 + MT2B LTR ERVL 156 264 -337 5 1407 612 170 45 0 chr5 107780188 107780300 -44756959 + B1_Mur4 SINE Alu 2 118 -32 5 1407 279 0 0 0 chr5 107780300 107780331 -44756928 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1407 423 0 0 0 chr5 107780331 107780377 -44756882 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1407 706 249 27 55 chr5 107780783 107780966 -44756293 + B3 SINE B2 12 189 -27 5 1407 318 67 0 0 chr5 107780974 107781019 -44756240 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 5 1407 471 214 163 23 chr5 107781057 107781186 -44756073 + B1_Mm SINE Alu 1 147 0 5 1407 262 24 71 0 chr5 107781602 107781644 -44755615 + (TCCC)n Simple_repeat Simple_repeat 1 45 0 5 1407 514 233 15 0 chr5 107781717 107781850 -44755409 - ID_B1 SINE B4 -2 222 88 5 1407 232 226 0 19 chr5 107782043 107782097 -44755162 + (TA)n Simple_repeat Simple_repeat 2 54 0 5 1407 976 293 138 46 chr5 107782110 107782385 -44754874 - L1MB2 LINE L1 -233 5938 5538 5 1407 1388 82 22 0 chr5 107782385 107782568 -44754691 - B2_Mm1a SINE B2 -6 187 1 5 1407 976 308 51 56 chr5 107782568 107783069 -44754190 - L1MB2 LINE L1 -310 5537 5052 5 1407 396 0 0 0 chr5 107783130 107783174 -44754085 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1407 729 300 116 15 chr5 107783201 107783607 -44753652 - L1M3 LINE L1 -1811 4329 3883 5 1407 475 324 41 0 chr5 107784467 107784612 -44752647 + RSINE1 SINE B4 11 161 -4 5 1407 243 0 0 0 chr5 107786369 107786396 -44750863 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 5 1407 1072 68 0 0 chr5 107786397 107786543 -44750716 - B1_Mus1 SINE Alu -1 147 2 5 1407 653 145 61 8 chr5 107786603 107786735 -44750524 + B1F SINE Alu 11 149 0 5 1407 255 61 0 0 chr5 107787183 107787216 -44750043 + (TCC)n Simple_repeat Simple_repeat 1 33 0 5 1407 334 267 69 0 chr5 107787216 107787317 -44749942 - PB1D10 SINE Alu -7 110 3 5 1407 519 223 0 0 chr5 107787472 107787575 -44749684 + B3A SINE B2 2 104 -94 5 1407 23 0 0 0 chr5 107787666 107787689 -44749570 + AT_rich Low_complexity Low_complexity 1 23 0 5 1407 339 44 0 0 chr5 107788798 107788843 -44748416 + (CCCCCG)n Simple_repeat Simple_repeat 1 45 0 5 1407 546 57 0 0 chr5 107788872 107788942 -44748317 + (CAG)n Simple_repeat Simple_repeat 1 70 0 5 1407 180 0 0 0 chr5 107789035 107789055 -44748204 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 5 1407 24 32 0 0 chr5 107789385 107789416 -44747843 + AT_rich Low_complexity Low_complexity 1 31 0 5 1407 423 119 0 0 chr5 107790188 107790255 -44747004 + (TCCC)n Simple_repeat Simple_repeat 4 70 0 5 1407 325 183 155 3 chr5 107790266 107790358 -44746901 - B1_Mus1 SINE Alu -26 122 7 6 1407 22 35 0 0 chr5 107790939 107790968 -44746291 + AT_rich Low_complexity Low_complexity 1 29 0 6 1407 217 312 24 72 chr5 107790986 107791069 -44746190 - ID4_ SINE ID -3 80 2 6 1407 207 100 0 0 chr5 107791071 107791101 -44746158 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 6 1407 370 324 0 0 chr5 107791188 107791299 -44745960 - PB1D10 SINE Alu -6 111 1 6 1407 255 280 258 0 chr5 107791812 107791905 -44745354 + PB1D10 SINE Alu 1 117 0 6 1407 345 82 0 0 chr5 107792241 107792290 -44744969 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1407 180 0 0 0 chr5 107792644 107792664 -44744595 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 1407 951 70 35 0 chr5 107792670 107792812 -44744447 - B1_Mus2 SINE Alu 0 147 1 6 1407 1057 128 202 11 chr5 107792820 107793167 -44744092 - MTC LTR MaLR -8 413 1 6 1407 977 161 101 30 chr5 107793167 107793435 -44743824 - MTC-int LTR MaLR 0 1258 972 6 1407 1590 209 12 9 chr5 107793506 107793835 -44743424 - MTC LTR MaLR -90 331 2 6 1407 307 288 207 0 chr5 107794507 107794618 -44742641 + ID_B1 SINE B4 84 217 -7 6 1407 236 164 143 43 chr5 107794558 107794628 -44742631 + B1F SINE Alu 73 149 0 6 1407 807 207 69 0 chr5 107795203 107795377 -44741882 + B3 SINE B2 24 209 -7 6 1407 285 290 130 0 chr5 107796850 107796988 -44740271 - AmnSINE1 SINE SINE -96 479 324 6 1407 410 160 0 0 chr5 107797374 107797449 -44739810 + ID_B1 SINE B4 149 223 -1 6 1407 230 262 102 14 chr5 107797970 107798117 -44739142 - L1MA8 LINE L1 -2 6289 6130 6 1407 25 51 0 0 chr5 107798600 107798639 -44738620 + AT_rich Low_complexity Low_complexity 1 39 0 6 1407 504 0 0 0 chr5 107798983 107799039 -44738220 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1407 278 311 0 0 chr5 107799887 107799961 -44737298 + ID4_ SINE ID 1 74 -9 6 1407 295 250 29 0 chr5 107799898 107799966 -44737293 + tRNA-Ala-GCY_ tRNA tRNA 6 75 0 6 1407 272 244 25 37 chr5 107800265 107800346 -44736913 + ID4 SINE ID 1 80 -3 6 1407 1440 31 0 0 chr5 107800699 107800930 -44736329 + (GGAA)n Simple_repeat Simple_repeat 1 231 0 6 1407 473 235 8 50 chr5 107802334 107802455 -44734804 - PB1D10 SINE Alu 0 117 2 6 1407 970 80 0 0 chr5 107802767 107802905 -44734354 - B1_Mus1 SINE Alu 0 148 11 6 1407 634 242 19 13 chr5 107802950 107803105 -44734154 - B3 SINE B2 -1 215 60 6 1407 2275 220 134 102 chr5 107803677 107803758 -44733501 - Lx8 LINE L1 -63 7410 7327 6 1407 1150 45 0 0 chr5 107803758 107803892 -44733367 + B1_Mus2 SINE Alu 2 135 -12 6 1407 216 0 0 0 chr5 107803893 107803917 -44733342 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1407 2275 220 134 102 chr5 107803917 107804667 -44732592 - Lx8 LINE L1 -147 7326 6550 6 1407 413 280 10 0 chr5 107805077 107805177 -44732082 - PB1D10 SINE Alu -16 101 1 6 1407 22 0 0 0 chr5 107806446 107806468 -44730791 + AT_rich Low_complexity Low_complexity 1 22 0 6 1407 508 236 321 0 chr5 107806620 107806785 -44730474 + ID_B1 SINE B4 1 218 -6 6 1407 336 296 23 31 chr5 107807225 107807354 -44729905 + MIR SINE MIR 26 153 -109 6 1407 265 253 9 95 chr5 107807657 107807762 -44729497 - RMER15 LTR ERVL -76 499 404 6 1407 757 258 52 44 chr5 107808013 107808285 -44728974 + B4A SINE B4 1 274 -18 6 1407 603 299 140 30 chr5 107808565 107809059 -44728200 - L1MA4 LINE L1 -402 5898 5351 6 1407 1171 82 0 0 chr5 107809267 107809413 -44727846 - B1_Mus2 SINE Alu -1 146 1 6 1407 627 324 54 17 chr5 107809543 107809890 -44727369 - L1MA4 LINE L1 -3207 2939 2580 6 1407 22 35 0 0 chr5 107809897 107809926 -44727333 + AT_rich Low_complexity Low_complexity 1 29 0 6 1407 220 208 0 0 chr5 107810045 107810098 -44727161 + A-rich Low_complexity Low_complexity 1 53 0 6 1407 317 188 0 12 chr5 107810415 107810501 -44726758 + CT-rich Low_complexity Low_complexity 2 86 0 6 1407 333 294 10 10 chr5 107811300 107811403 -44725856 - PB1D10 SINE Alu -5 112 10 6 1407 225 0 0 0 chr5 107811419 107811444 -44725815 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1407 1114 41 0 70 chr5 107811444 107811601 -44725658 - B1_Mm SINE Alu 0 147 2 6 1407 268 278 14 0 chr5 107811636 107811708 -44725551 - ID4_ SINE ID -4 79 7 6 1407 1954 215 158 26 chr5 107811813 107812343 -44724916 + RMER19B LTR ERVK 303 902 0 6 1407 28 0 0 0 chr5 107813656 107813684 -44723575 + AT_rich Low_complexity Low_complexity 1 28 0 6 1407 342 45 0 0 chr5 107813747 107813791 -44723468 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1407 511 282 63 19 chr5 107813797 107813956 -44723303 - B3A SINE B2 -30 168 3 6 1407 224 213 0 0 chr5 107814056 107814117 -44723142 + T-rich Low_complexity Low_complexity 6 66 0 6 1407 254 229 47 24 chr5 107814119 107814204 -44723055 - PB1D9 SINE Alu 0 120 34 6 1407 595 230 14 22 chr5 107814938 107815076 -44722183 - ID_B1 SINE B4 -6 218 82 6 1407 230 265 0 146 chr5 107815773 107815910 -44721349 + MT2B LTR ERVL 148 264 -337 6 1407 359 273 7 79 chr5 107815792 107815923 -44721336 + B1F2 SINE Alu 3 130 -19 6 1407 5720 208 94 25 chr5 107816056 107817514 -44719745 - Lx7 LINE L1 0 7696 6035 6 1407 3373 131 108 8 chr5 107817525 107818170 -44719089 - RMER6D LTR ERVK -10 710 1 6 1407 4082 171 59 90 chr5 107818175 107818981 -44718278 - Lx7 LINE L1 -1664 6032 5272 6 1407 1530 59 5 0 chr5 107818981 107819168 -44718091 - B2_Mm1a SINE B2 -5 188 1 6 1407 4082 168 58 104 chr5 107819168 107819531 -44717728 - Lx7 LINE L1 -609 5271 4890 6 1407 9091 157 73 35 chr5 107819529 107819557 -44717702 - Lx7 LINE L1 -2669 3211 3184 6 1407 1568 44 16 0 chr5 107819557 107819740 -44717519 - B2_Mm2 SINE B2 -8 187 2 6 1407 9091 170 67 35 chr5 107819740 107822022 -44715237 - Lx7 LINE L1 -2697 3183 828 6 1407 276 30 0 0 chr5 107822177 107822210 -44715049 + (GGGGA)n Simple_repeat Simple_repeat 5 37 0 6 1407 1204 160 21 0 chr5 107822666 107822860 -44714399 - Lx2 LINE L1 -197 6800 6603 6 1407 348 133 0 0 chr5 107822865 107822925 -44714334 + Lx2B LINE L1 6933 6992 -8 6 1407 366 23 0 0 chr5 107824152 107824195 -44713064 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1407 455 148 11 0 chr5 107824196 107824284 -44712975 + (TA)n Simple_repeat Simple_repeat 2 90 0 6 1407 26 50 0 0 chr5 107824305 107824345 -44712914 + AT_rich Low_complexity Low_complexity 1 40 0 6 1407 805 258 176 12 chr5 107824504 107824845 -44712414 - RMER5 LTR ERV1 0 534 138 6 1407 270 216 0 51 chr5 107824832 107824910 -44712349 - ID_B1 SINE B4 -74 150 77 6 1407 1164 68 0 0 chr5 107825609 107825756 -44711503 + B1_Mus2 SINE Alu 1 147 0 6 1407 192 182 0 0 chr5 107825759 107825803 -44711456 + A-rich Low_complexity Low_complexity 1 44 0 6 1407 217 237 25 50 chr5 107826140 107826220 -44711039 + C-rich Low_complexity Low_complexity 1 78 0 6 1407 2147 155 83 19 chr5 107826334 107826754 -44710505 - RMER12B LTR ERVK -957 447 1 6 1407 1646 113 255 28 chr5 107826851 107827169 -44710090 - ORR1B1 LTR MaLR 0 394 5 6 1407 531 242 39 0 chr5 107827180 107827308 -44709951 + RSINE1 SINE B4 20 152 -13 6 1407 196 127 0 35 chr5 107827581 107827638 -44709621 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1407 340 126 32 32 chr5 107827680 107827803 -44709456 + (TG)n Simple_repeat Simple_repeat 2 124 0 6 1407 241 218 18 0 chr5 107827863 107827918 -44709341 - PB1D7 SINE Alu -64 56 1 6 1407 22 0 0 0 chr5 107828698 107828720 -44708539 + AT_rich Low_complexity Low_complexity 1 22 0 6 1407 744 85 0 0 chr5 107828810 107828916 -44708343 - B2_Mm2 SINE B2 -88 107 2 6 1407 650 194 0 109 chr5 107828936 107829092 -44708167 + B1_Mus2 SINE Alu 7 145 -2 6 1407 1415 142 32 0 chr5 107829192 107829439 -44707820 - ORR1D1 LTR MaLR -119 255 1 6 1407 324 275 91 9 chr5 107829444 107829554 -44707705 - MLT1J2 LTR MaLR -263 185 67 6 1407 273 309 104 61 chr5 107829598 107829925 -44707334 + L1M5 LINE L1 5355 5695 -545 6 1407 283 250 111 12 chr5 107830225 107830306 -44706953 + L1MD LINE L1 5084 5172 -974 6 1407 866 142 0 0 chr5 107830337 107830457 -44706802 + 5S rRNA rRNA 1 120 -1 6 1407 266 148 19 0 chr5 107830458 107830512 -44706747 + GA-rich Low_complexity Low_complexity 2 56 0 6 1407 3433 67 1 1 chr5 107830624 107831059 -44706200 - L1_Mus2 LINE L1 -383 6183 5750 6 1407 270 326 11 21 chr5 107831225 107831319 -44705940 + L1MD LINE L1 5326 5418 -761 6 1407 419 218 69 0 chr5 107831791 107831892 -44705367 + B3A SINE B2 9 116 -82 6 1407 207 0 0 0 chr5 107831894 107831917 -44705342 + (CGGA)n Simple_repeat Simple_repeat 2 24 0 6 1407 243 0 0 0 chr5 107831917 107831943 -44705316 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1407 26 114 0 0 chr5 107832463 107832594 -44704665 + GC_rich Low_complexity Low_complexity 1 131 0 6 1407 266 73 24 0 chr5 107833686 107833727 -44703532 + (GGA)n Simple_repeat Simple_repeat 2 43 0 6 1407 270 139 0 0 chr5 107834106 107834149 -44703110 - ID4 SINE ID -39 44 2 6 1407 311 267 0 0 chr5 107834215 107834290 -44702969 - ID2 SINE ID -7 76 2 6 1407 264 143 0 0 chr5 107835223 107835279 -44701980 + (TTG)n Simple_repeat Simple_repeat 2 57 0 6 1407 236 128 0 0 chr5 107835301 107835340 -44701919 - MLT1A1 LTR MaLR -70 338 300 6 1407 402 255 9 52 chr5 107835638 107835677 -44701582 - PB1D10 SINE Alu -6 111 78 6 1407 1709 123 207 6 chr5 107835677 107836005 -44701254 - ORR1B1 LTR MaLR 0 394 1 6 1407 402 255 9 52 chr5 107836005 107836081 -44701178 - PB1D10 SINE Alu -40 77 1 6 1407 447 180 25 10 chr5 107836175 107836283 -44700976 + MTD LTR MaLR 248 395 -24 6 1407 305 277 128 23 chr5 107837175 107837308 -44699951 + B1F2 SINE Alu 1 147 -2 6 1407 181 0 33 33 chr5 107837321 107837351 -44699908 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 6 1407 459 259 192 11 chr5 107837536 107837723 -44699536 + B4 SINE B4 3 223 -69 6 1407 931 220 0 0 chr5 107837735 107837903 -44699356 + B3A SINE B2 4 171 -27 6 1407 270 0 0 0 chr5 107837907 107837937 -44699322 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1407 284 156 0 45 chr5 107837957 107838024 -44699235 + (TATG)n Simple_repeat Simple_repeat 3 66 0 6 1407 973 222 44 107 chr5 107838040 107838378 -44698881 + RMER12 LTR ERVK 785 1101 -221 7 1407 306 0 0 0 chr5 107838384 107838418 -44698841 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1407 1845 156 65 16 chr5 107838616 107838988 -44698271 - RLTR24 LTR ERV1 0 529 140 7 1407 377 282 97 68 chr5 107839223 107839525 -44697734 + B4A SINE B4 3 279 -13 7 1407 3137 64 20 0 chr5 107839929 107840321 -44696938 - MTB LTR MaLR 0 400 1 7 1407 318 232 221 0 chr5 107840464 107840559 -44696700 - B3A SINE B2 -81 117 2 7 1407 247 180 31 62 chr5 107840560 107840625 -44696634 - B3A SINE B2 -134 64 2 7 1407 336 141 155 0 chr5 107841219 107841290 -44695969 - ID_B1 SINE B4 -1 223 142 7 1407 333 267 9 62 chr5 107841301 107841413 -44695846 - B3A SINE B2 0 198 93 7 1407 909 184 156 0 chr5 107841433 107841612 -44695647 - B3 SINE B2 -9 207 1 7 1407 477 298 12 24 chr5 107841839 107842004 -44695255 - RSINE1 SINE B4 0 165 3 7 1407 438 20 0 0 chr5 107842214 107842265 -44694994 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1407 289 178 164 0 chr5 107842268 107842341 -44694918 - PB1D10 SINE Alu -6 111 27 7 1407 243 0 0 0 chr5 107843123 107843150 -44694109 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1407 387 221 26 0 chr5 107843315 107843418 -44693841 + PB1D10 SINE Alu 18 128 -22 7 1407 396 273 18 0 chr5 107843488 107843598 -44693661 - PB1D10 SINE Alu -5 112 1 7 1407 417 20 0 0 chr5 107843604 107843654 -44693605 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1407 1177 239 58 22 chr5 107843960 107844371 -44692888 - Charlie1a DNA MER1_type -12 1443 1018 7 1407 1696 253 42 59 chr5 107844460 107844965 -44692294 - Lx9 LINE L1 -171 7473 6978 7 1407 394 283 22 0 chr5 107845095 107845187 -44692072 + B1F2 SINE Alu 12 105 -44 7 1407 743 170 0 36 chr5 107845315 107845455 -44691804 - B1_Mur1 SINE Alu -2 147 13 7 1407 761 309 68 75 chr5 107845453 107845880 -44691379 - Charlie1a DNA MER1_type -1025 430 7 7 1407 716 294 0 0 chr5 107846064 107846224 -44691035 + RSINE1 SINE B4 2 161 -4 7 1407 317 224 0 17 chr5 107847568 107847627 -44689632 - ID4_ SINE ID -6 77 20 7 1407 185 65 32 0 chr5 107848396 107848427 -44688832 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7 1407 1128 82 0 0 chr5 107848427 107848566 -44688693 - B1_Mus1 SINE Alu -8 140 2 7 1407 1813 145 40 51 chr5 107849012 107849064 -44688195 - ORR1D1 LTR MaLR -3 371 328 7 1407 2490 136 91 16 chr5 107849064 107849491 -44687768 + RMER6B LTR ERVK 1 459 -2 7 1407 1813 145 40 51 chr5 107849491 107849809 -44687450 - ORR1D1 LTR MaLR -47 327 5 7 1407 24 0 0 0 chr5 107850345 107850369 -44686890 + AT_rich Low_complexity Low_complexity 1 24 0 7 1407 276 286 14 0 chr5 107850369 107850439 -44686820 - PB1 SINE Alu -30 97 27 7 1407 581 187 0 54 chr5 107850520 107850652 -44686607 + B1F1 SINE Alu 5 127 -20 7 1407 235 175 12 20 chr5 107850933 107851016 -44686243 - L1MC4 LINE L1 -759 7202 7123 7 1407 261 0 0 0 chr5 107851063 107851092 -44686167 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 7 1407 811 95 24 8 chr5 107851093 107851220 -44686039 - B1_Mur4 SINE Alu -15 135 7 7 1407 296 263 82 95 chr5 107851220 107851240 -44686019 - B4 SINE B4 -81 211 67 7 1407 322 268 47 0 chr5 107851472 107851595 -44685664 - L1MC5 LINE L1 -1196 6799 6659 7 1407 5944 223 68 20 chr5 107852015 107853663 -44683596 - Lx9 LINE L1 -1 7643 5809 7 1407 597 28 0 0 chr5 107853664 107853735 -44683524 + (TC)n Simple_repeat Simple_repeat 2 72 0 7 1407 241 360 37 0 chr5 107854101 107854237 -44683022 - L1MC5 LINE L1 -2092 5790 5650 7 1407 1218 35 7 0 chr5 107854270 107854415 -44682844 + B1_Mus1 SINE Alu 2 147 -1 7 1407 1032 119 0 0 chr5 107854429 107854588 -44682671 + (GAA)n Simple_repeat Simple_repeat 3 161 0 7 1407 700 270 28 19 chr5 107855531 107855746 -44681513 - ID_B1 SINE B4 -7 217 1 7 1407 369 271 0 0 chr5 107856117 107856294 -44680965 + (TG)n Simple_repeat Simple_repeat 2 178 0 7 1407 402 280 0 0 chr5 107856357 107856532 -44680727 + (TG)n Simple_repeat Simple_repeat 1 175 0 7 1407 433 302 97 71 chr5 107856593 107856860 -44680399 - B4A SINE B4 -18 274 1 7 1407 402 198 103 9 chr5 107857463 107857570 -44679689 + PB1D10 SINE Alu 1 117 0 7 1407 410 219 59 42 chr5 107857585 107857704 -44679555 - MTE2a LTR MaLR 0 379 259 7 1407 287 375 59 25 chr5 107858030 107858268 -44678991 - B4 SINE B4 0 292 47 7 1407 473 266 57 7 chr5 107858291 107858431 -44678828 - B1_Mur2 SINE Alu -1 148 2 7 1407 231 250 0 0 chr5 107858458 107858514 -44678745 - MER106B DNA MER1_type 0 1059 1004 7 1407 390 305 244 25 chr5 107859690 107860149 -44677110 - Tigger7 DNA MER2_type -1893 598 32 7 1407 21 0 0 0 chr5 107860269 107860290 -44676969 + AT_rich Low_complexity Low_complexity 1 21 0 7 1407 210 353 0 29 chr5 107861178 107861283 -44675976 + CT-rich Low_complexity Low_complexity 2 103 0 7 1407 1299 236 81 0 chr5 107863542 107863839 -44673420 - MTD LTR MaLR -98 321 1 7 1407 316 220 45 28 chr5 107864589 107864713 -44672546 + Lx8 LINE L1 5720 5878 -1595 7 1407 256 94 19 19 chr5 107864867 107864921 -44672338 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 7 1407 213 288 0 29 chr5 107864921 107864989 -44672270 + G-rich Low_complexity Low_complexity 3 68 0 7 1407 1130 62 14 0 chr5 107865482 107865626 -44671633 - B1_Mus2 SINE Alu 0 147 2 7 1407 261 0 0 0 chr5 107865690 107865719 -44671540 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1407 2044 132 61 79 chr5 107865950 107866379 -44670880 + RLTR23 LTR ERV1 10 430 0 7 1407 333 206 59 0 chr5 107867891 107867959 -44669300 - B3A SINE B2 -119 79 8 7 1407 446 151 224 48 chr5 107868002 107868127 -44669132 - B1_Mus2 SINE Alu 0 147 1 7 1407 186 103 0 0 chr5 107868448 107868477 -44668782 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1407 1891 152 140 5 chr5 107869185 107869556 -44667703 + MTC LTR MaLR 1 421 0 7 1407 212 0 36 0 chr5 107869716 107869744 -44667515 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1407 180 0 0 0 chr5 107870441 107870461 -44666798 + (C)n Simple_repeat Simple_repeat 1 20 0 7 1407 3394 140 7 4 chr5 107870599 107871136 -44666123 - Lx4A LINE L1 0 7058 6520 7 1407 997 274 22 4 chr5 107871559 107871826 -44665433 + B4A SINE B4 1 272 -20 7 1407 360 0 0 0 chr5 107871835 107871875 -44665384 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1408 261 0 0 0 chr5 107872294 107872323 -44664936 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1408 224 290 0 14 chr5 107872434 107872504 -44664755 - ID_B1 SINE B4 -59 165 97 7 1408 707 140 81 81 chr5 107872919 107873067 -44664192 + B1_Mur4 SINE Alu 1 148 -2 7 1408 302 325 77 7 chr5 107873311 107873466 -44663793 - L2c LINE L2 -66 3321 3156 7 1408 438 53 0 0 chr5 107873929 107873986 -44663273 + (TTTTC)n Simple_repeat Simple_repeat 3 59 0 7 1408 1152 61 7 0 chr5 107874010 107874157 -44663102 - B1_Mus1 SINE Alu 0 148 1 7 1408 2385 114 48 8 chr5 107874317 107874714 -44662545 - MTC LTR MaLR -8 413 1 7 1408 408 263 30 0 chr5 107875235 107875334 -44661925 + PB1D10 SINE Alu 2 103 -14 7 1408 559 174 4 4 chr5 107875401 107875526 -44661733 + B1_Mur4 SINE Alu 14 138 -10 7 1408 182 192 19 0 chr5 107875572 107875624 -44661635 + CT-rich Low_complexity Low_complexity 2 54 0 7 1408 358 264 46 0 chr5 107875672 107875759 -44661500 - RSINE1 SINE B4 -68 97 7 7 1408 287 0 0 50 chr5 107875847 107875887 -44661372 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 7 1408 207 328 126 26 chr5 107875955 107876146 -44661113 + MIRb SINE MIR 29 238 -30 7 1408 767 144 0 77 chr5 107876222 107876365 -44660894 + B1_Mus2 SINE Alu 1 132 -15 7 1408 250 188 0 36 chr5 107876387 107876448 -44660811 + GA-rich Low_complexity Low_complexity 1 59 0 7 1408 4227 122 53 27 chr5 107876448 107876784 -44660475 + RMER6D LTR ERVK 3 359 -361 7 1408 405 0 0 0 chr5 107876784 107876829 -44660430 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1408 288 70 0 0 chr5 107876832 107876875 -44660384 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 7 1408 4227 122 53 27 chr5 107876875 107877234 -44660025 + RMER6D LTR ERVK 360 717 -3 7 1408 250 188 0 36 chr5 107877234 107877255 -44660004 + polypurine Low_complexity Low_complexity 60 76 0 7 1408 1106 209 15 0 chr5 107877350 107877556 -44659703 + B3 SINE B2 1 209 -7 7 1408 21 0 0 0 chr5 107877561 107877582 -44659677 + AT_rich Low_complexity Low_complexity 1 21 0 7 1408 1395 39 78 6 chr5 107877592 107877752 -44659507 + B2_Mm1a SINE B2 2 160 -33 7 1408 207 0 0 0 chr5 107877752 107877775 -44659484 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1408 1395 39 78 6 chr5 107877775 107877793 -44659466 + B2_Mm1a SINE B2 161 191 -2 7 1408 506 226 9 0 chr5 107877812 107877918 -44659341 + B1_Mur4 SINE Alu 1 107 -43 7 1408 675 221 7 14 chr5 107878334 107878481 -44658778 - B1_Mur1 SINE Alu 0 149 4 7 1408 286 243 14 54 chr5 107878963 107879037 -44658222 - ID4_ SINE ID -1 82 12 7 1408 283 264 21 21 chr5 107879070 107879163 -44658096 - PB1 SINE Alu -3 124 32 7 1408 962 267 108 63 chr5 107879227 107879626 -44657633 + MER74A LTR ERVL 26 442 -116 7 1408 791 280 46 7 chr5 107879634 107879915 -44657344 - B4A SINE B4 0 292 1 7 1408 377 291 31 6 chr5 107880002 107880161 -44657098 - L1M4 LINE L1 -2253 3893 3731 7 1408 889 179 0 16 chr5 107880170 107880414 -44656845 + CT-rich Low_complexity Low_complexity 1 239 0 7 1408 465 200 200 0 chr5 107880414 107880534 -44656725 - B1_Mur3 SINE Alu -5 144 1 7 1408 234 229 90 99 chr5 107880534 107880767 -44656492 - L1M4 LINE L1 -2408 3738 3508 7 1408 393 287 176 0 chr5 107880817 107880953 -44656306 + ID_B1 SINE B4 64 223 -1 7 1408 27 0 0 0 chr5 107880971 107880998 -44656261 + AT_rich Low_complexity Low_complexity 1 27 0 7 1408 373 249 35 142 chr5 107881570 107881767 -44655492 - Tigger9b DNA MER2_type -142 482 307 8 1408 314 252 124 16 chr5 107883621 107883750 -44653509 - MER2 DNA MER2_type -121 224 82 8 1408 233 279 50 0 chr5 107883763 107883924 -44653335 + (TATAG)n Simple_repeat Simple_repeat 3 171 0 8 1408 641 214 52 73 chr5 107884064 107884256 -44653003 - B3A SINE B2 -2 214 27 8 1408 233 300 73 24 chr5 107884604 107884686 -44652573 - MER21B LTR ERV1 -765 98 13 8 1408 302 202 267 11 chr5 107885418 107885508 -44651751 - B3 SINE B2 0 216 104 8 1408 3111 149 39 7 chr5 107885508 107886068 -44651191 + L1_Mur2 LINE L1 4729 5306 -571 8 1408 1639 21 0 0 chr5 107886056 107886242 -44651017 - L1Md_F2 LINE L1 -757 5827 5642 8 1408 6198 43 3 1 chr5 107886242 107886990 -44650269 + L1Md_F2 LINE L1 5834 6582 0 8 1408 2530 111 0 0 chr5 107886991 107887342 -44649917 + L1_Mm LINE L1 5288 5638 -245 8 1408 326 227 40 0 chr5 107887367 107887442 -44649817 - B3A SINE B2 -119 79 2 8 1408 292 232 0 12 chr5 107887641 107887724 -44649535 - MER57D LTR ERV1 0 434 353 8 1408 807 231 186 114 chr5 107888132 107888465 -44648794 - ORR1E LTR MaLR -2 357 1 8 1408 509 276 173 10 chr5 107888532 107888752 -44648507 - MER57D LTR ERV1 -142 269 7 8 1408 216 131 47 47 chr5 107888818 107888882 -44648377 + T-rich Low_complexity Low_complexity 1 64 0 8 1408 557 226 144 6 chr5 107889128 107889288 -44647971 + B3A SINE B2 1 182 -16 8 1408 638 251 107 12 chr5 107889425 107889594 -44647665 + ID_B1 SINE B4 3 187 -37 8 1408 231 229 53 150 chr5 107889508 107889621 -44647638 + B1_Mur3 SINE Alu 8 109 -40 8 1408 3290 50 0 0 chr5 107889777 107890157 -44647102 + L1Md_F2 LINE L1 6203 6582 0 8 1408 273 301 123 90 chr5 107890623 107890835 -44646424 + Charlie15a DNA MER1_type 3 221 -3 8 1408 225 0 0 0 chr5 107891369 107891394 -44645865 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1408 734 305 111 16 chr5 107891418 107891671 -44645588 - B4A SINE B4 -7 285 9 8 1408 371 340 0 0 chr5 107891853 107891953 -44645306 - PB1D10 SINE Alu -16 101 2 8 1408 201 196 0 0 chr5 107892066 107892117 -44645142 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 8 1408 546 268 18 0 chr5 107892347 107892459 -44644800 - B3 SINE B2 -102 114 1 8 1408 658 181 30 0 chr5 107892464 107892597 -44644662 - URR1B DNA MER1_type -6 219 83 8 1408 333 302 93 23 chr5 107893592 107893721 -44643538 + MIRb SINE MIR 24 161 -107 8 1408 242 216 59 0 chr5 107893938 107893989 -44643270 + MER58D DNA MER1_type 333 386 0 8 1408 340 344 123 0 chr5 107894902 107895056 -44642203 + Tigger13a DNA MER2_type 446 618 -153 8 1408 210 37 0 0 chr5 107895200 107895227 -44642032 + (TTTAG)n Simple_repeat Simple_repeat 3 29 0 8 1408 910 156 0 0 chr5 107895228 107895369 -44641890 - B1_Mur4 SINE Alu -9 141 1 8 1408 303 287 23 76 chr5 107896537 107896681 -44640578 + B1F SINE Alu 5 142 -7 8 1408 429 228 83 56 chr5 107897105 107897249 -44640010 - B1F2 SINE Alu -1 148 1 8 1408 342 0 0 0 chr5 107897315 107897353 -44639906 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1408 377 307 16 202 chr5 107897367 107897468 -44639791 - B4 SINE B4 0 292 224 8 1408 698 311 6 0 chr5 107897468 107897629 -44639630 - RSINE1 SINE B4 -1 164 3 8 1408 380 326 20 66 chr5 107897629 107897780 -44639479 - B4A SINE B4 -62 230 87 8 1408 758 155 31 0 chr5 107897778 107897907 -44639352 - B3 SINE B2 -79 137 5 8 1408 336 216 27 13 chr5 107897912 107897987 -44639272 - B4A SINE B4 -213 79 4 8 1408 622 194 36 6 chr5 107898058 107898192 -44639067 - PB1D9 SINE Alu 0 147 4 8 1408 1347 120 72 11 chr5 107898313 107898575 -44638684 + RMER12B LTR ERVK 919 1196 -208 8 1408 378 0 0 0 chr5 107898582 107898624 -44638635 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1408 825 217 137 5 chr5 107898988 107899178 -44638081 - B3 SINE B2 0 216 2 8 1408 301 295 105 0 chr5 107899437 107899542 -44637717 - PB1D10 SINE Alu -1 116 1 8 1408 582 224 92 81 chr5 107900435 107900620 -44636639 + B3A SINE B2 1 187 -8 8 1408 186 43 0 0 chr5 107900623 107900646 -44636613 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 8 1408 1267 48 7 0 chr5 107901072 107901218 -44636041 + B1_Mus2 SINE Alu 1 147 0 8 1408 1130 207 70 26 chr5 107901239 107901364 -44635895 - RMER1C Other Other -18 1324 1201 8 1408 1185 43 7 0 chr5 107901364 107901502 -44635757 + B1_Mus1 SINE Alu 1 139 -9 8 1408 272 70 0 23 chr5 107901502 107901546 -44635713 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 8 1408 1130 207 70 26 chr5 107901546 107901692 -44635567 - RMER1C Other Other -142 1200 1041 8 1408 4439 27 59 0 chr5 107901693 107902671 -44634588 - L1Md_T LINE L1 0 6582 5519 8 1408 1048 171 30 252 chr5 107903425 107903854 -44633405 + ORR1C2 LTR MaLR 2 335 -49 8 1408 6970 217 82 10 chr5 107903860 107905460 -44631799 - Lx7 LINE L1 -380 7316 5601 8 1408 765 191 95 0 chr5 107905460 107905628 -44631631 - MT2A LTR ERVL 0 533 350 8 1408 262 268 0 18 chr5 107905649 107905706 -44631553 - MT2A LTR ERVL -400 133 78 8 1408 6047 196 86 38 chr5 107905747 107907259 -44630000 - Lx7 LINE L1 -278 5602 4019 8 1408 226 281 0 0 chr5 107907334 107907416 -44629843 + T-rich Low_complexity Low_complexity 1 82 0 8 1408 201 195 0 0 chr5 107908104 107908145 -44629114 + (CGG)n Simple_repeat Simple_repeat 2 42 0 8 1408 211 297 104 39 chr5 107908551 107908628 -44628631 - B4 SINE B4 -210 82 1 8 1408 788 190 62 47 chr5 107909666 107909859 -44627400 - ORR1D1 LTR MaLR -178 196 1 8 1408 403 195 0 13 chr5 107910222 107910300 -44626959 + Lx7 LINE L1 3872 3948 -1932 8 1408 6499 212 90 31 chr5 107910314 107910785 -44626474 + Lx7 LINE L1 4085 4571 -1309 8 1408 1258 48 0 7 chr5 107910785 107910933 -44626326 - B1_Mus2 SINE Alu 0 147 1 8 1408 6499 212 90 31 chr5 107910933 107911005 -44626254 + Lx7 LINE L1 4572 4629 -1251 8 1408 396 0 0 0 chr5 107911005 107911049 -44626210 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1408 6499 226 90 31 chr5 107911049 107912471 -44624788 + Lx7 LINE L1 4630 6170 -1526 8 1408 462 79 0 0 chr5 107912471 107912534 -44624725 + (TA)n Simple_repeat Simple_repeat 1 63 0 8 1408 2575 284 93 30 chr5 107912534 107913027 -44624232 + Lx7 LINE L1 6171 6681 -1015 8 1408 608 267 193 36 chr5 107913078 107913581 -44623678 + Lx7 LINE L1 6868 7473 0 8 1408 183 204 0 0 chr5 107913667 107913711 -44623548 + (TA)n Simple_repeat Simple_repeat 1 44 0 8 1408 609 262 43 0 chr5 107913773 107913914 -44623345 - B1_Mur1 SINE Alu 0 149 3 8 1408 1318 174 14 0 chr5 107914304 107914511 -44622748 + B3 SINE B2 1 210 -6 8 1408 251 239 63 32 chr5 107915519 107915614 -44621645 - RLTR22_Mur LTR ERVK -694 1154 1057 8 1408 265 274 131 0 chr5 107916026 107916110 -44621149 - U13_ snRNA snRNA -8 100 6 8 1408 444 51 0 0 chr5 107916421 107916480 -44620779 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1408 999 129 0 14 chr5 107916492 107916634 -44620625 + B1_Mus1 SINE Alu 1 140 -8 8 1408 476 32 16 0 chr5 107916634 107916696 -44620563 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 8 1408 628 303 85 5 chr5 107916762 107916961 -44620298 - ID_B1 SINE B4 -8 216 2 8 1408 971 102 11 11 chr5 107917485 107917664 -44619595 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1408 565 230 19 26 chr5 107917722 107917878 -44619381 - Lx5 LINE L1 -8 7042 6888 8 1408 2358 128 118 5 chr5 107917867 107918283 -44618976 - Lx5 LINE L1 -330 6720 6258 8 1408 241 240 0 0 chr5 107918709 107918759 -44618500 - L1MC LINE L1 -612 5721 5672 8 1408 753 225 92 42 chr5 107918920 107919203 -44618056 + Lx3C LINE L1 6679 6975 -1 8 1408 23 33 0 0 chr5 107919203 107919233 -44618026 + AT_rich Low_complexity Low_complexity 1 30 0 8 1408 294 275 0 7 chr5 107919448 107919533 -44617726 - L1MA4 LINE L1 -362 5938 5858 8 1408 880 223 96 23 chr5 107920075 107920295 -44616964 - RLTR18 LTR ERVK 0 616 381 8 1408 254 268 18 0 chr5 107920287 107920343 -44616916 - RLTR18 LTR ERVK -454 58 2 8 1408 1762 279 70 30 chr5 107920940 107921599 -44615660 + ERVL-int LTR ERVL 4288 4972 -785 8 1408 1072 201 173 37 chr5 107922198 107922493 -44614766 - MTD LTR MaLR -37 382 48 8 1408 543 178 29 6 chr5 107922551 107922726 -44614533 + CT-rich Low_complexity Low_complexity 2 180 0 8 1408 839 207 94 6 chr5 107923200 107923380 -44613879 - MTD LTR MaLR -212 207 12 8 1408 880 216 53 10 chr5 107923858 107924064 -44613195 + B3 SINE B2 2 216 0 8 1408 625 263 119 19 chr5 107924074 107924233 -44613026 - B3A SINE B2 -21 177 3 8 1408 232 325 157 13 chr5 107924643 107924796 -44612463 - MLT1H2 LTR MaLR -11 478 304 8 1408 367 167 22 0 chr5 107925487 107925577 -44611682 + (TG)n Simple_repeat Simple_repeat 1 92 0 8 1408 23 101 0 0 chr5 107926274 107926353 -44610906 + AT_rich Low_complexity Low_complexity 1 79 0 8 1408 27 29 0 0 chr5 107928682 107928716 -44608543 + AT_rich Low_complexity Low_complexity 1 34 0 8 1408 280 240 57 0 chr5 107930162 107930248 -44607011 + PB1D10 SINE Alu 5 96 -21 8 1408 964 137 14 7 chr5 107930635 107930782 -44606477 + B1_Mur4 SINE Alu 3 150 0 8 1408 347 366 43 27 chr5 107931611 107931799 -44605460 + MIRc SINE MIR 53 243 -25 8 1408 744 226 20 0 chr5 107932064 107932210 -44605049 + B1_Mur1 SINE Alu 1 149 0 8 1408 441 116 0 0 chr5 107932278 107932347 -44604912 + (TCCC)n Simple_repeat Simple_repeat 1 69 0 8 1408 495 0 0 0 chr5 107933049 107933104 -44604155 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1408 462 279 214 16 chr5 107933171 107933353 -44603906 - ID_B1 SINE B4 -5 219 2 8 1408 305 254 202 16 chr5 107934570 107934694 -44602565 + B1F SINE Alu 3 149 0 8 1408 450 292 86 55 chr5 107934762 107934925 -44602334 + B4 SINE B4 125 292 0 8 1408 224 279 23 0 chr5 107934929 107935015 -44602244 + (CA)n Simple_repeat Simple_repeat 1 88 0 8 1408 219 278 97 0 chr5 107935184 107935256 -44602003 + ID4_ SINE ID 2 80 -3 8 1408 22 0 0 0 chr5 107939898 107939920 -44597339 + AT_rich Low_complexity Low_complexity 1 22 0 8 1408 896 227 12 0 chr5 107940868 107941031 -44596228 - RSINE1 SINE B4 0 165 1 8 1408 197 382 0 22 chr5 107941939 107942030 -44595229 - MIRb SINE MIR -16 252 164 8 1408 21 0 0 0 chr5 107942909 107942930 -44594329 + AT_rich Low_complexity Low_complexity 1 21 0 8 1408 588 278 33 7 chr5 107942941 107943093 -44594166 - RSINE1 SINE B4 -8 157 2 8 1408 189 0 0 0 chr5 107943778 107943799 -44593460 + (TTG)n Simple_repeat Simple_repeat 1 21 0 9 1408 1143 61 0 75 chr5 107943807 107943967 -44593292 - B1_Mus1 SINE Alu 0 148 1 9 1408 267 260 109 44 chr5 107944087 107944224 -44593035 - L1MB7 LINE L1 0 6184 6039 9 1408 769 163 22 34 chr5 107944508 107944673 -44592586 + RMER20A LTR ERVK 1 161 -355 9 1408 801 275 125 15 chr5 107944804 107945133 -44592126 + RMER20A LTR ERVK 152 516 0 9 1408 414 0 0 0 chr5 107945688 107945734 -44591525 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1408 323 283 60 11 chr5 107945772 107945874 -44591385 + PB1D10 SINE Alu 8 118 -2 9 1408 606 277 51 6 chr5 107945942 107946098 -44591161 + RSINE1 SINE B4 3 165 0 9 1408 554 257 135 10 chr5 107946345 107946553 -44590706 - L1MA9 LINE L1 -272 6040 5807 9 1408 563 277 181 15 chr5 107946586 107946846 -44590413 - RMER15 LTR ERVL 0 575 273 9 1408 345 240 57 152 chr5 107946956 107947133 -44590126 - RMER15-int LTR ERVL -5 4994 4835 9 1408 419 280 79 8 chr5 107947194 107947320 -44589939 - RMER15-int LTR ERVL -696 4303 4169 9 1408 1593 313 94 24 chr5 107947495 107948247 -44589012 - RMER15-int LTR ERVL -2807 2192 1388 9 1408 300 219 47 0 chr5 107948442 107948506 -44588753 - ID4_ SINE ID -12 71 5 9 1408 6444 83 74 5 chr5 107948516 107949473 -44587786 - RLTR13D5 LTR ERVK 0 1023 1 9 1408 482 291 22 15 chr5 107949480 107949616 -44587643 - B1F1 SINE Alu -8 141 5 9 1408 254 262 68 0 chr5 107949642 107949745 -44587514 - B1F2 SINE Alu -1 148 39 9 1408 321 268 230 52 chr5 107949864 107950112 -44587147 - B4A SINE B4 0 292 1 9 1408 186 133 0 0 chr5 107950120 107950150 -44587109 + (TTC)n Simple_repeat Simple_repeat 2 31 0 9 1408 298 317 126 19 chr5 107950428 107950531 -44586728 + PB1D7 SINE Alu 6 119 -1 9 1408 933 252 164 9 chr5 107950962 107951335 -44585924 + MER57C2 LTR ERV1 1 409 -25 9 1408 729 249 12 12 chr5 107951507 107951670 -44585589 + RSINE1 SINE B4 3 165 0 9 1408 319 191 119 0 chr5 107952012 107952096 -44585163 + PB1 SINE Alu 26 119 -8 9 1408 1052 191 62 48 chr5 107952233 107952611 -44584648 - ORR1C2 LTR MaLR 0 384 39 9 1408 511 254 0 0 chr5 107952895 107953005 -44584254 - MTEb LTR MaLR -269 110 1 9 1408 333 0 0 0 chr5 107953872 107953909 -44583350 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1408 321 266 38 30 chr5 107954500 107954632 -44582627 + L1M LINE L1 5254 5386 -738 9 1408 213 255 0 0 chr5 107954879 107954930 -44582329 + ID SINE ID 2 52 -172 9 1408 494 314 105 46 chr5 107955010 107955380 -44581879 - HAL1b LINE L1 -899 1110 719 9 1408 1005 44 51 7 chr5 107955380 107955517 -44581742 - B1_Mus1 SINE Alu 0 148 6 9 1408 339 369 49 8 chr5 107955735 107955858 -44581401 - RSINE1 SINE B4 0 165 38 9 1408 1127 232 11 45 chr5 107955876 107956232 -44581027 - RLTR15 LTR ERVK -15 344 1 9 1408 2485 112 72 24 chr5 107956624 107957000 -44580259 + ORR1B1 LTR MaLR 1 394 0 9 1408 942 151 99 20 chr5 107957000 107957260 -44579999 + ORR1B1 LTR MaLR 1 386 -8 9 1408 425 292 104 22 chr5 107957273 107957455 -44579804 - L1M2 LINE L1 -518 5782 5586 9 1408 1849 176 31 70 chr5 107957490 107957905 -44579354 + RLTR18B LTR ERVK 4 402 -110 9 1408 1698 261 44 65 chr5 107958444 107959013 -44578246 - RLTR18 LTR ERVK -4 612 56 9 1408 466 183 10 31 chr5 107959061 107959157 -44578102 + PB1 SINE Alu 27 120 -7 9 1408 299 260 99 10 chr5 107959186 107959287 -44577972 + PB1 SINE Alu 10 125 -2 9 1408 527 359 90 52 chr5 107959346 107959746 -44577513 - L2a LINE L2 -33 3393 2979 9 1408 182 300 20 0 chr5 107959812 107959862 -44577397 - L2a LINE L2 -1152 2267 2217 9 1408 466 183 10 31 chr5 107959873 107959969 -44577290 + PB1 SINE Alu 27 120 -7 9 1408 299 260 99 10 chr5 107959998 107960099 -44577160 + PB1 SINE Alu 10 125 -2 9 1408 562 311 141 49 chr5 107960195 107960662 -44576597 - L2a LINE L2 -1243 2176 1667 9 1408 21 0 0 0 chr5 107960782 107960803 -44576456 + AT_rich Low_complexity Low_complexity 1 21 0 9 1408 2089 150 11 132 chr5 107960843 107960888 -44576371 - ORR1B1 LTR MaLR -8 386 353 9 1408 1648 48 0 11 chr5 107960888 107961078 -44576181 - B2_Mm1a SINE B2 -5 188 1 9 1408 2089 150 11 132 chr5 107961078 107961471 -44575788 - ORR1B1 LTR MaLR -42 352 1 9 1408 345 261 0 0 chr5 107961549 107961618 -44575641 - ID4_ SINE ID -13 70 2 9 1408 578 301 94 77 chr5 107961640 107961786 -44575473 - MLT1A0 LTR MaLR -4 361 211 9 1408 904 212 38 53 chr5 107961786 107961995 -44575264 - B3 SINE B2 -10 206 1 9 1408 578 301 94 77 chr5 107961995 107962200 -44575059 - MLT1A0 LTR MaLR -155 210 4 9 1408 182 350 38 0 chr5 107962201 107962281 -44574978 - L2a LINE L2 -1994 1425 1343 9 1408 298 375 73 18 chr5 107962377 107962597 -44574662 + MIRb SINE MIR 21 252 -16 9 1408 198 0 0 0 chr5 107963133 107963155 -44574104 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 1408 243 79 0 0 chr5 107963155 107963193 -44574066 + (GA)n Simple_repeat Simple_repeat 2 39 0 9 1408 599 283 57 0 chr5 107963195 107963354 -44573905 - B3A SINE B2 -30 168 1 9 1408 244 239 164 0 chr5 107963570 107963637 -44573622 - PB1D9 SINE Alu -42 78 1 9 1408 348 218 13 0 chr5 107964249 107964327 -44572932 - B3 SINE B2 -4 212 134 9 1408 1354 97 21 0 chr5 107964766 107964952 -44572307 - B2_Mm1t SINE B2 -3 190 1 9 1408 433 271 37 9 chr5 107965064 107965172 -44572087 + L3 LINE CR1 4248 4358 -131 9 1408 1406 183 0 5 chr5 107965457 107965671 -44571588 + B3 SINE B2 1 213 -3 9 1408 565 262 45 172 chr5 107965671 107965714 -44571545 - B3A SINE B2 -1 197 150 9 1408 324 0 0 0 chr5 107965714 107965750 -44571509 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1408 565 299 46 51 chr5 107965750 107965918 -44571341 - B3A SINE B2 -28 170 2 9 1408 1041 203 62 132 chr5 107965985 107966429 -44570830 + ORR1D1 LTR MaLR 1 374 0 9 1408 1574 276 158 36 chr5 107966486 107967039 -44570220 - L1MC3 LINE L1 -89 7696 7064 9 1408 681 276 82 45 chr5 107967039 107967308 -44569951 - B4A SINE B4 -11 281 3 9 1408 1574 276 158 36 chr5 107967308 107967638 -44569621 - L1MC3 LINE L1 -722 7063 6705 9 1408 240 278 87 22 chr5 107967873 107967965 -44569294 + LTR40a LTR ERVL 422 519 0 9 1408 396 248 40 0 chr5 107968004 107968105 -44569154 + PB1D7 SINE Alu 1 105 -15 9 1408 492 283 12 56 chr5 107968617 107968778 -44568481 - ID_B1 SINE B4 -1 223 70 9 1408 22 35 0 0 chr5 107969318 107969347 -44567912 + AT_rich Low_complexity Low_complexity 1 29 0 9 1408 359 211 66 0 chr5 107969739 107969815 -44567444 - ID2 SINE ID -2 81 1 9 1408 333 0 0 0 chr5 107970361 107970398 -44566861 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1408 288 0 0 0 chr5 107970398 107970429 -44566830 + (GA)n Simple_repeat Simple_repeat 1 32 0 9 1408 284 172 0 17 chr5 107970717 107970776 -44566483 - MER53 DNA hAT -132 61 4 9 1408 589 291 88 20 chr5 107971018 107971267 -44565992 - L1MEg LINE L1 -5816 268 3 9 1408 414 85 0 0 chr5 107971439 107971498 -44565761 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1408 700 257 223 9 chr5 107971580 107971800 -44565459 - B4A SINE B4 -23 269 3 9 1408 3434 120 14 6 chr5 107971818 107972305 -44564954 - Lx2 LINE L1 -1 6996 6506 9 1408 380 317 110 7 chr5 107974197 107974343 -44562916 + MER21B LTR ERV1 332 492 -371 9 1408 399 298 26 24 chr5 107974376 107974500 -44562759 - PB1D10 SINE Alu -17 132 1 9 1408 197 292 0 0 chr5 107975083 107975131 -44562128 + L4 LINE RTE 1982 2029 0 9 1408 4150 187 64 6 chr5 107975508 107976510 -44560749 - Lx9 LINE L1 -232 7412 6197 9 1408 598 250 15 30 chr5 107976918 107977050 -44560209 - B1_Mur1 SINE Alu -9 140 11 9 1408 508 146 187 37 chr5 107977594 107977701 -44559558 - B1_Mm SINE Alu -21 126 4 9 1408 733 240 41 6 chr5 107977709 107977881 -44559378 - B3 SINE B2 -34 182 5 9 1408 244 318 19 17 chr5 107978209 107978325 -44558934 - PB1D10 SINE Alu -24 125 2 9 1408 309 109 0 0 chr5 107978554 107978600 -44558659 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1408 303 239 87 29 chr5 107978601 107978670 -44558589 - ID4 SINE ID -10 73 1 9 1408 757 235 7 26 chr5 107979058 107979211 -44558048 - RSINE1 SINE B4 -8 157 8 9 1408 756 223 96 11 chr5 107979740 107979917 -44557342 + B3A SINE B2 1 192 -6 9 1408 432 97 0 0 chr5 107980693 107980755 -44556504 + (TG)n Simple_repeat Simple_repeat 2 63 0 9 1408 345 333 41 20 chr5 107980761 107980908 -44556351 - RSINE1 SINE B4 -13 152 3 9 1408 286 265 283 8 chr5 107981330 107981446 -44555813 - B3 SINE B2 -33 183 36 9 1408 231 132 26 0 chr5 107981511 107981549 -44555710 - B3 SINE B2 -177 39 1 9 1408 250 196 36 0 chr5 107981739 107981795 -44555464 + B1_Mur1 SINE Alu 92 149 0 9 1408 246 231 19 0 chr5 107982055 107982107 -44555152 + ID_B1 SINE B4 142 194 -30 9 1408 661 263 51 0 chr5 107982109 107982265 -44554994 + RSINE1 SINE B4 2 165 0 9 1408 225 254 146 0 chr5 107983083 107983138 -44554121 - ID4_ SINE ID -5 78 16 9 1408 218 326 44 11 chr5 107983622 107983712 -44553547 - PB1D10 SINE Alu -3 114 22 9 1408 2750 177 44 65 chr5 107984549 107985118 -44552141 + RLTR31_Mm LTR ERVK 5 561 0 9 1408 637 274 148 20 chr5 107985129 107985434 -44551825 + L1ME2z LINE L1 6099 6442 -2 9 1408 23 0 0 0 chr5 107985642 107985665 -44551594 + AT_rich Low_complexity Low_complexity 1 23 0 9 1408 189 0 0 0 chr5 107987687 107987708 -44549551 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1408 1223 75 0 0 chr5 107987708 107987855 -44549404 - B1_Mus2 SINE Alu 0 147 1 9 1408 27 0 0 0 chr5 107987926 107987953 -44549306 + AT_rich Low_complexity Low_complexity 1 27 0 9 1408 746 249 127 8 chr5 107987953 107988212 -44549047 - B4A SINE B4 -1 291 2 9 1408 183 171 114 0 chr5 107988396 107988431 -44548828 + L4 LINE RTE 1654 1692 -337 9 1408 234 253 80 11 chr5 107989786 107989874 -44547385 + MTEb LTR MaLR 281 374 -5 9 1408 29 60 0 0 chr5 107989976 107990026 -44547233 + AT_rich Low_complexity Low_complexity 1 50 0 9 1408 253 211 0 159 chr5 107990555 107990662 -44546597 - MER3 DNA MER1_type -25 184 95 1 1408 23 33 0 0 chr5 107990990 107991020 -44546239 + AT_rich Low_complexity Low_complexity 1 30 0 1 1408 500 271 136 0 chr5 107991031 107991171 -44546088 + RSINE1 SINE B4 4 162 -3 1 1408 333 172 0 0 chr5 107991178 107991242 -44546017 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1408 31 44 0 0 chr5 107991368 107991413 -44545846 + AT_rich Low_complexity Low_complexity 1 45 0 1 1408 350 287 32 0 chr5 107991447 107991541 -44545718 + PB1D10 SINE Alu 13 109 -8 1 1408 308 222 25 107 chr5 107991614 107991735 -44545524 - ID_B1 SINE B4 -9 215 105 1 1408 215 190 0 79 chr5 107991891 107991954 -44545305 - ID4_ SINE ID -25 58 1 1 1408 368 258 124 13 chr5 107991982 107992134 -44545125 + MLT1B LTR MaLR 11 179 -211 1 1408 655 195 124 79 chr5 107992134 107992312 -44544947 + B3A SINE B2 1 186 -9 1 1408 728 268 103 105 chr5 107992344 107992954 -44544305 + RMER20B LTR ERVK 30 707 -201 1 1408 282 280 172 37 chr5 107993152 107993206 -44544053 + MLT1B LTR MaLR 270 332 -135 1 1408 1298 231 104 62 chr5 107993206 107993608 -44543651 + MTD LTR MaLR 1 419 0 1 1408 282 280 172 37 chr5 107993608 107993716 -44543543 + MLT1B LTR MaLR 333 454 -13 1 1408 555 301 86 70 chr5 107993716 107994132 -44543127 - L1M2 LINE L1 -2071 4069 3656 1 1408 433 292 45 58 chr5 107994142 107994298 -44542961 - RSINE1 SINE B4 0 165 12 1 1408 486 262 46 66 chr5 107994348 107994499 -44542760 - B1F SINE Alu 0 149 2 1 1408 305 315 168 6 chr5 107994614 107994793 -44542466 - L1M2 LINE L1 -2620 3523 3316 1 1408 943 129 22 71 chr5 107994933 107995117 -44542142 - B2_Mm2 SINE B2 -19 176 2 1 1408 624 284 59 159 chr5 107995123 107995236 -44542023 - L1M2 LINE L1 -3003 3140 3038 1 1408 814 261 16 16 chr5 107995236 107995423 -44541836 - B3A SINE B2 -11 187 1 1 1408 624 284 59 159 chr5 107995423 107995975 -44541284 - L1M2 LINE L1 -3106 3037 2542 1 1408 378 159 79 117 chr5 107996201 107996302 -44540957 - B1F1 SINE Alu -3 146 30 1 1408 852 256 23 0 chr5 107996330 107996506 -44540753 + B3A SINE B2 1 180 -18 1 1408 3335 67 12 0 chr5 107996904 107997335 -44539924 + LTRIS5 LTR ERV1 12 447 0 1 1408 599 278 41 41 chr5 107999392 107999499 -44537760 + MLT1E LTR MaLR 49 152 -501 1 1408 2299 154 41 0 chr5 107999499 107999862 -44537397 + ORR1C1 LTR MaLR 1 378 0 1 1408 599 278 41 41 chr5 107999862 107999949 -44537310 + MLT1E LTR MaLR 153 243 -410 1 1408 198 0 0 0 chr5 107999962 107999984 -44537275 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 1 1408 209 128 25 25 chr5 108000024 108000064 -44537195 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1408 1009 198 21 0 chr5 108000140 108000327 -44536932 + B3 SINE B2 1 191 -25 2 1408 350 245 0 109 chr5 108000340 108000450 -44536809 + MT2B LTR ERVL 161 258 -343 3 1408 682 203 0 15 chr5 108000360 108000495 -44536764 + B1_Mur3 SINE Alu 17 149 0 4 1408 402 21 0 0 chr5 108000623 108000670 -44536589 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1408 253 231 168 22 chr5 108000691 108000828 -44536431 + L1MB3 LINE L1 5977 6133 -50 6 1408 535 242 165 32 chr5 108000829 108000987 -44536272 + B3 SINE B2 25 203 -13 7 1408 184 254 31 31 chr5 108001575 108001640 -44535619 + MER5A DNA MER1_type 6 70 -119 8 1408 255 231 168 28 chr5 108001863 108001970 -44535289 + Charlie18a DNA MER1_type 54 175 -167 9 1408 23 0 0 0 chr5 108002067 108002090 -44535169 + AT_rich Low_complexity Low_complexity 1 23 0 1 21 440 223 228 21 chr5 108003105 108003352 -44533907 + MTEa LTR MaLR 82 379 0 1 1409 714 184 209 17 chr5 108003836 108004013 -44533246 + B3 SINE B2 1 211 -5 1 1409 12941 44 1 0 chr5 108004623 108006870 -44530389 - L1Md_F2 LINE L1 -12 6570 4323 1 1409 37211 23 2 31 chr5 108007937 108013289 -44523970 + L1Md_T LINE L1 391 5586 -297 1 1409 8588 35 0 0 chr5 108013289 108014285 -44522974 + L1Md_T LINE L1 5587 6582 0 1 1409 7676 37 0 0 chr5 108014283 108015180 -44522079 + L1Md_T LINE L1 5686 6582 0 1 1409 645 155 128 8 chr5 108015182 108015299 -44521960 - B1_Mus1 SINE Alu -13 135 5 1 1409 1772 270 115 32 chr5 108015626 108016245 -44521014 + RMER1C Other Other 375 1044 -298 1 1409 1220 54 0 0 chr5 108016278 108016425 -44520834 - B1_Mus1 SINE Alu 0 148 2 1 1409 863 158 220 0 chr5 108016454 108016631 -44520628 + B3 SINE B2 1 216 0 1 1409 325 276 212 22 chr5 108017249 108017386 -44519873 - RSINE1 SINE B4 -1 164 2 2 1409 216 260 40 0 chr5 108017555 108017605 -44519654 - B1_Mur4 SINE Alu -61 89 38 2 1409 431 245 94 40 chr5 108018409 108018558 -44518701 + MER20 DNA MER1_type 1 157 -62 2 1409 429 236 73 0 chr5 108018994 108019104 -44518155 + B4A SINE B4 2 119 -173 2 1409 200 220 0 20 chr5 108019232 108019283 -44517976 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1409 2651 126 22 77 chr5 108019519 108020011 -44517248 - Lx4A LINE L1 -2 7056 6592 2 1409 4514 108 40 19 chr5 108020011 108020715 -44516544 + Lx4A LINE L1 5870 6588 -470 2 1409 537 239 33 109 chr5 108021008 108021219 -44516040 + ID_B1 SINE B4 19 213 -11 2 1409 287 179 0 0 chr5 108021221 108021277 -44515982 + ID_B1 SINE B4 158 213 -11 2 1409 287 179 0 0 chr5 108021279 108021335 -44515924 + ID_B1 SINE B4 158 213 -11 2 1409 287 179 0 0 chr5 108021337 108021393 -44515866 + ID_B1 SINE B4 158 213 -11 2 1409 313 268 10 40 chr5 108021502 108021603 -44515656 - PB1D10 SINE Alu -1 116 19 3 1409 655 268 52 0 chr5 108021790 108021943 -44515316 + B4A SINE B4 131 291 -1 2 1409 300 318 39 82 chr5 108022149 108022382 -44514877 + MT2A LTR ERVL 143 365 -168 3 1409 236 257 37 65 chr5 108022481 108022589 -44514670 + ORR1D1 LTR MaLR 268 372 -2 3 1409 3353 28 10 10 chr5 108023021 108023417 -44513842 + MTA_Mm LTR MaLR 1 396 0 3 1409 9412 32 3 1 chr5 108023417 108024513 -44512746 + MTA_Mm-int LTR MaLR 1 1098 0 3 1409 3328 26 21 0 chr5 108024513 108024901 -44512358 + MTA_Mm LTR MaLR 1 396 0 3 1409 250 316 53 0 chr5 108024957 108025052 -44512207 - PB1D7 SINE Alu -8 112 13 3 1409 739 247 27 38 chr5 108025134 108025319 -44511940 + B3A SINE B2 1 183 -15 3 1409 436 155 39 11 chr5 108025402 108025496 -44511763 - B3A SINE B2 -103 92 1 3 1409 484 226 25 25 chr5 108025526 108025644 -44511615 - B1_Mus1 SINE Alu -21 127 10 3 1409 300 173 18 80 chr5 108026634 108026747 -44510512 + (CCCCG)n Simple_repeat Simple_repeat 5 110 0 3 1409 483 128 0 0 chr5 108027649 108027735 -44509524 + (T)n Simple_repeat Simple_repeat 1 86 0 3 1409 338 107 0 18 chr5 108028149 108028206 -44509053 + (TTTC)n Simple_repeat Simple_repeat 1 56 0 4 1409 1184 49 0 0 chr5 108028220 108028364 -44508895 - B1_Mus1 SINE Alu -1 147 4 4 1409 1502 179 46 54 chr5 108028655 108028927 -44508332 - MTC LTR MaLR -75 346 68 4 1409 1782 63 0 0 chr5 108028927 108029149 -44508110 - L1_Mus1 LINE L1 0 6567 6346 4 1409 1502 179 46 54 chr5 108029149 108029225 -44508034 - MTC LTR MaLR -354 67 1 4 1409 417 215 0 12 chr5 108029497 108029577 -44507682 + ID4_ SINE ID 1 79 -4 4 1409 41 48 0 0 chr5 108030356 108030418 -44506841 + AT_rich Low_complexity Low_complexity 1 62 0 4 1409 1544 144 3 58 chr5 108031053 108031348 -44505911 + MTC LTR MaLR 139 417 -4 4 1409 4476 130 106 8 chr5 108031359 108032191 -44505068 + MTC-int LTR MaLR 2 914 -344 4 1409 1023 168 86 0 chr5 108032199 108032396 -44504863 - MTC LTR MaLR -58 363 150 4 1409 257 330 57 0 chr5 108033086 108033174 -44504085 + ID_B1 SINE B4 125 217 -7 4 1409 509 296 133 24 chr5 108033842 108034252 -44503007 + L1MB3 LINE L1 5608 6135 -48 4 1409 1261 34 0 0 chr5 108034258 108034404 -44502855 + B1_Mus2 SINE Alu 2 147 0 5 1409 189 0 0 0 chr5 108034404 108034425 -44502834 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1409 340 282 36 0 chr5 108034441 108034551 -44502708 + PB1D10 SINE Alu 4 117 0 5 1409 446 258 39 87 chr5 108034606 108034814 -44502445 + B4A SINE B4 90 288 -4 5 1409 534 259 14 54 chr5 108035114 108035261 -44501998 + B1F SINE Alu 9 149 0 5 1409 1338 85 11 0 chr5 108036582 108036758 -44500501 + B2_Mm1t SINE B2 2 179 -14 5 1409 309 58 464 0 chr5 108036805 108036889 -44500370 + B2_Mm2 SINE B2 47 169 -26 5 1409 284 0 0 27 chr5 108036895 108036932 -44500327 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 5 1409 2060 160 20 3 chr5 108037342 108037699 -44499560 - Lx5 LINE L1 -3 7047 6685 5 1409 1862 160 105 0 chr5 108038179 108038522 -44498737 - Lx5 LINE L1 -360 6690 6312 5 1409 406 293 14 41 chr5 108038736 108038882 -44498377 + ID_B1 SINE B4 82 223 -1 5 1409 594 320 51 25 chr5 108039583 108039820 -44497439 + MER44B DNA MER2_type 1 243 -307 6 1409 290 309 20 10 chr5 108039826 108039924 -44497335 + MER44B DNA MER2_type 452 550 0 6 1409 226 300 0 0 chr5 108040001 108040061 -44497198 - ID4 SINE ID 0 83 24 6 1409 212 163 0 0 chr5 108040075 108040118 -44497141 + T-rich Low_complexity Low_complexity 1 43 0 6 1409 23 0 0 0 chr5 108040578 108040601 -44496658 + AT_rich Low_complexity Low_complexity 1 23 0 6 1409 249 237 0 17 chr5 108041979 108042039 -44495220 + ID_B1 SINE B4 128 186 -38 6 1409 360 336 17 0 chr5 108042766 108042885 -44494374 + PB1 SINE Alu 4 124 -3 6 1409 185 172 0 59 chr5 108042996 108043064 -44494195 + (TATG)n Simple_repeat Simple_repeat 4 67 0 6 1409 383 318 138 52 chr5 108043115 108043384 -44493875 - B4A SINE B4 0 292 1 6 1409 599 213 65 137 chr5 108043416 108043693 -44493566 + MTE2a LTR MaLR 123 379 0 6 1409 513 208 24 32 chr5 108043698 108043822 -44493437 + RSINE1 SINE B4 43 165 0 6 1409 876 164 0 12 chr5 108043824 108044072 -44493187 + (TA)n Simple_repeat Simple_repeat 1 244 0 7 1409 1693 178 86 23 chr5 108044104 108044490 -44492769 - MTC LTR MaLR -7 414 5 7 1409 295 303 0 13 chr5 108045268 108045345 -44491914 + ID4 SINE ID 6 81 -2 7 1409 520 231 16 71 chr5 108045420 108045546 -44491713 - B3 SINE B2 -76 119 1 7 1409 2305 156 112 25 chr5 108045709 108046229 -44491030 - RMER15 LTR ERVL -5 570 6 7 1409 228 211 211 0 chr5 108046260 108046336 -44490923 - ID_B1 SINE B4 -131 93 2 7 1409 586 275 122 6 chr5 108046412 108046584 -44490675 + B3 SINE B2 1 192 -24 7 1409 232 192 77 0 chr5 108046579 108046631 -44490628 + B4A SINE B4 71 126 -166 7 1409 792 219 91 10 chr5 108047834 108048032 -44489227 - B3 SINE B2 0 216 3 7 1409 564 271 78 59 chr5 108050017 108050272 -44486987 + B4A SINE B4 32 291 -1 7 1409 288 305 122 0 chr5 108051985 108052067 -44485192 + PB1D10 SINE Alu 1 92 -28 8 1409 7365 91 38 8 chr5 108052944 108054042 -44483217 + Lx LINE L1 5524 6653 -1 8 1409 25 0 0 0 chr5 108054564 108054589 -44482670 + AT_rich Low_complexity Low_complexity 1 25 0 8 1409 804 272 77 44 chr5 108055236 108055509 -44481750 + B4 SINE B4 8 289 -3 8 1409 313 240 50 50 chr5 108056200 108056301 -44480958 + L1MA9 LINE L1 6101 6201 -111 8 1409 297 287 102 70 chr5 108056445 108056632 -44480627 + MT2B LTR ERVL 86 278 -323 8 1409 842 179 7 0 chr5 108056518 108056658 -44480601 + B1_Mur4 SINE Alu 9 149 -1 8 1409 235 278 13 53 chr5 108056708 108056784 -44480475 + ID4_ SINE ID 2 74 -9 8 1409 1154 77 98 29 chr5 108057168 108057341 -44479918 - B2_Mm2 SINE B2 -10 185 1 8 1409 310 233 85 97 chr5 108057441 108057617 -44479642 + L1MC5 LINE L1 7737 7910 -51 8 1409 259 311 61 69 chr5 108057965 108058096 -44479163 - MER5B DNA MER1_type -41 137 8 9 1409 743 176 54 7 chr5 108058330 108058479 -44478780 - B3 SINE B2 -60 156 1 9 1409 1786 186 43 3 chr5 108058628 108058979 -44478280 + ORR1D1 LTR MaLR 5 369 -5 9 1409 383 153 256 12 chr5 108059140 108059226 -44478033 + PB1D9 SINE Alu 3 109 -11 9 1409 406 315 81 40 chr5 108059600 108059749 -44477510 + RSINE1 SINE B4 8 162 -3 9 1409 316 194 16 0 chr5 108059795 108059857 -44477402 + B2_Mm2 SINE B2 1 63 -132 9 1409 622 0 26 0 chr5 108059858 108059936 -44477323 + (TG)n Simple_repeat Simple_repeat 1 80 0 9 1409 183 42 0 0 chr5 108060013 108060037 -44477222 + (TTG)n Simple_repeat Simple_repeat 2 25 0 9 1409 991 75 7 15 chr5 108060040 108060175 -44477084 - B1_Mur4 SINE Alu -13 137 4 9 1409 771 219 53 0 chr5 108060175 108060322 -44476937 + B3 SINE B2 58 212 -4 9 1409 265 275 45 18 chr5 108060517 108060628 -44476631 - L2 LINE L2 -1027 2392 2279 1 1409 1351 25 0 0 chr5 108060885 108061042 -44476217 - L1_Mm LINE L1 -781 5102 4946 1 1409 4699 27 11 6 chr5 108061042 108061570 -44475689 + L1Md_F3 LINE L1 6039 6569 -15 1 1409 535 211 0 0 chr5 108061598 108061693 -44475566 - B1_Mur3 SINE Alu -54 95 1 1 1409 313 214 10 92 chr5 108061608 108061706 -44475553 - MT2B LTR ERVL -361 240 151 1 1409 25 0 0 0 chr5 108063076 108063101 -44474158 + AT_rich Low_complexity Low_complexity 1 25 0 1 1409 836 145 30 0 chr5 108063391 108063522 -44473737 + B1_Mus1 SINE Alu 1 135 -13 1 1409 29 0 0 0 chr5 108064095 108064124 -44473135 + AT_rich Low_complexity Low_complexity 1 29 0 1 1409 312 302 55 36 chr5 108064554 108064664 -44472595 + RSINE1 SINE B4 53 164 -1 1 1409 1055 71 234 0 chr5 108065630 108065784 -44471475 - B2_Mm2 SINE B2 -4 191 2 1 1409 1169 298 100 15 chr5 108067002 108067551 -44469708 - L1MB7 LINE L1 -41 6143 5548 1 1409 299 291 128 37 chr5 108067619 108067783 -44469476 + ORR1E LTR MaLR 14 192 -167 1 1409 258 252 74 50 chr5 108067816 108067937 -44469322 + ORR1E LTR MaLR 256 379 0 1 1409 904 310 124 80 chr5 108067936 108068563 -44468696 + ORR1E-int LTR MaLR 2 656 -924 1 1409 364 262 12 0 chr5 108068754 108068838 -44468421 + ORR1E-int LTR MaLR 960 1044 -536 1 1409 841 261 58 5 chr5 108069538 108069761 -44467498 + ORR1E-int LTR MaLR 1148 1382 -198 1 1409 369 0 0 0 chr5 108070158 108070199 -44467060 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1409 374 237 16 85 chr5 108070954 108071083 -44466176 - PB1D7 SINE Alu 0 120 1 1 1409 219 327 14 18 chr5 108071213 108071308 -44465951 + MIR3 SINE MIR 97 193 -83 1 1409 655 245 18 36 chr5 108072286 108072451 -44464808 - RSINE1 SINE B4 -3 162 1 1 1409 241 289 119 12 chr5 108072510 108072594 -44464665 - PB1D10 SINE Alu -23 94 2 1 1409 257 216 0 19 chr5 108072666 108072718 -44464541 + B1F2 SINE Alu 9 59 -90 1 1409 229 325 37 12 chr5 108072718 108072747 -44464512 + ID_B1 SINE B4 90 172 -52 1 1409 426 121 0 0 chr5 108073246 108073312 -44463947 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1409 538 294 109 76 chr5 108073922 108074198 -44463061 + B4A SINE B4 1 285 -7 1 1409 268 306 27 40 chr5 108074493 108074568 -44462691 + PB1D10 SINE Alu 36 109 -8 1 1409 1550 208 190 106 chr5 108074599 108075089 -44462170 + MT2A LTR ERVL 3 533 0 1 1409 742 173 118 15 chr5 108075140 108075275 -44461984 - B1_Mur1 SINE Alu 0 149 1 1 1409 706 280 14 39 chr5 108075439 108075647 -44461612 - B3 SINE B2 -4 212 10 1 1409 266 328 158 51 chr5 108075726 108076156 -44461103 + Lx8 LINE L1 6912 7387 -86 1 1409 3688 33 0 0 chr5 108076190 108076586 -44460673 + MTA_Mm LTR MaLR 1 396 0 1 1409 191 163 0 44 chr5 108077036 108077081 -44460178 + MER5B DNA MER1_type 62 104 -74 1 1409 275 208 0 0 chr5 108077094 108077147 -44460112 - MER5B DNA MER1_type -3 175 123 1 1409 1274 214 244 57 chr5 108077294 108077769 -44459490 - RMER2 LTR ERV1 0 567 4 1 1409 566 161 44 18 chr5 108078515 108078629 -44458630 + PB1D9 SINE Alu 4 120 0 1 1409 263 218 359 0 chr5 108079083 108079161 -44458098 + PB1D10 SINE Alu 1 106 -11 1 1409 485 283 9 0 chr5 108079263 108079369 -44457890 - PB1D7 SINE Alu -13 107 1 1 1409 2274 56 7 4 chr5 108080774 108081045 -44456214 - L1_Mus1 LINE L1 0 6567 6296 1 1409 411 260 154 0 chr5 108081089 108081193 -44456066 + PB1 SINE Alu 1 120 -7 1 1409 760 161 85 0 chr5 108081489 108081619 -44455640 + B1_Mus1 SINE Alu 1 141 -7 1 1409 363 230 85 75 chr5 108081853 108081947 -44455312 + PB1D9 SINE Alu 1 95 -25 1 1409 180 0 0 0 chr5 108082150 108082170 -44455089 + (CCA)n Simple_repeat Simple_repeat 2 21 0 1 1409 851 256 249 23 chr5 108082455 108083482 -44453777 - L1M2 LINE L1 -1929 4214 2939 1 1409 216 314 0 0 chr5 108083621 108083672 -44453587 + ID SINE ID 33 83 -141 1 1409 25 0 0 0 chr5 108083820 108083845 -44453414 + AT_rich Low_complexity Low_complexity 1 25 0 1 1409 21 82 0 0 chr5 108084790 108084839 -44452420 + AT_rich Low_complexity Low_complexity 1 49 0 1 1409 1867 170 109 16 chr5 108085034 108085411 -44451848 - Lx4B LINE L1 -1 7057 6646 1 1409 512 252 43 9 chr5 108085440 108085556 -44451703 - RSINE1 SINE B4 -35 130 11 1 1409 2254 227 124 30 chr5 108085572 108086248 -44451011 - Lx9 LINE L1 -81 7563 6824 1 1409 3763 204 215 36 chr5 108086234 108087570 -44449689 - L1_Rod LINE L1 -156 5691 4117 1 1409 1901 219 154 33 chr5 108087593 108088485 -44448774 - L1_Rod LINE L1 -2295 3848 2479 1 1409 696 172 179 0 chr5 108088488 108088639 -44448620 - L1_Rod LINE L1 -3494 2353 2176 1 1409 556 270 75 0 chr5 108088696 108088855 -44448404 - L1_Rod LINE L1 -3815 2032 1862 1 1409 565 203 327 28 chr5 108088840 108089088 -44448171 - L1_Rod LINE L1 -4092 1755 1434 1 1409 1396 166 189 111 chr5 108089206 108089910 -44447349 + Lx4A LINE L1 6298 7056 -2 1 1409 281 264 36 45 chr5 108090007 108090118 -44447141 - MamRep434 DNA TcMar -144 282 173 1 1409 365 297 72 67 chr5 108090906 108091115 -44446144 + L1_Rod LINE L1 34 243 -6929 1 1409 7574 187 89 48 chr5 108091302 108094146 -44443113 + L1_Rod LINE L1 455 3430 -2417 1 1409 6153 175 55 103 chr5 108094148 108096291 -44440968 + L1_Mur3 LINE L1 3347 4648 -1498 1 1409 487 254 51 0 chr5 108096291 108096409 -44440850 + RMER20B LTR ERVK 1 124 -503 1 1409 6153 175 55 103 chr5 108096409 108097531 -44439728 + L1_Mur3 LINE L1 4649 5330 -816 1 1409 238 237 48 48 chr5 108097699 108097761 -44439498 - PB1 SINE Alu -8 119 58 1 1409 33042 93 12 14 chr5 108097935 108103987 -44433272 + L1_Mus2 LINE L1 594 6566 0 1 1409 283 262 18 55 chr5 108103994 108104103 -44433156 + L1MA4A LINE L1 5814 5918 -385 1 1409 600 287 101 28 chr5 108104275 108104670 -44432589 + L1M4 LINE L1 4736 5168 -975 1 1409 910 228 72 0 chr5 108104696 108104889 -44432370 + ID_B1 SINE B4 1 207 -17 1 1409 315 0 0 0 chr5 108104900 108104935 -44432324 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1409 255 158 0 0 chr5 108104967 108105005 -44432254 + ID4_ SINE ID 6 43 -40 1 1409 1129 157 88 39 chr5 108105111 108105316 -44431943 + B3 SINE B2 2 216 0 1 1409 1501 69 26 16 chr5 108105433 108105624 -44431635 - B2_Mm2 SINE B2 -1 194 2 1 1409 323 206 83 40 chr5 108106685 108106781 -44430478 + B1F SINE Alu 1 97 -23 1 1409 234 218 178 56 chr5 108108171 108108278 -44428981 - MIR3 SINE MIR -78 130 11 1 1409 210 91 0 0 chr5 108108291 108108324 -44428935 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1409 612 236 82 20 chr5 108108325 108108597 -44428662 + L1M2 LINE L1 5204 5487 -813 1 1409 248 188 42 0 chr5 108108626 108108674 -44428585 + PB1D10 SINE Alu 56 105 -12 1 1409 522 0 0 0 chr5 108108674 108108732 -44428527 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1 1409 417 231 57 70 chr5 108108739 108108897 -44428362 + L1M2 LINE L1 5628 5783 -517 1 1409 673 314 15 10 chr5 108108957 108109163 -44428096 + ID_B1 SINE B4 4 210 -14 1 1409 606 185 56 0 chr5 108109741 108109849 -44427410 + PB1D9 SINE Alu 2 115 -5 1 1409 348 303 179 52 chr5 108109942 108110405 -44426854 - L1M5 LINE L1 -2173 3973 3452 1 1409 286 280 134 13 chr5 108110912 108111063 -44426196 - MIRc SINE MIR -92 176 8 1 1409 256 268 28 14 chr5 108112423 108112495 -44424764 - MTE2a LTR MaLR -17 362 290 1 1409 733 139 25 89 chr5 108112795 108112953 -44424306 + B1_Mur3 SINE Alu 1 148 -1 1 1409 531 205 144 8 chr5 108112995 108113113 -44424146 + B1_Mur2 SINE Alu 1 134 -15 1 1409 620 269 40 28 chr5 108114170 108114346 -44422913 + B4 SINE B4 63 240 -52 1 1409 300 287 0 33 chr5 108114536 108114626 -44422633 - B4A SINE B4 -44 248 162 1 1409 2355 46 6 90 chr5 108114626 108114678 -44422581 - ORR1A2 LTR MaLR 0 327 288 1 1409 4476 24 0 4 chr5 108114678 108115182 -44422077 - L1Md_F2 LINE L1 -12 6570 6069 1 1409 2355 46 6 90 chr5 108115182 108115486 -44421773 - ORR1A2 LTR MaLR -40 287 1 1 1409 646 288 18 12 chr5 108115486 108115651 -44421608 - B4A SINE B4 -126 166 1 1 1409 521 284 63 0 chr5 108118262 108118389 -44418870 - RSINE1 SINE B4 -29 136 2 1 1409 1393 85 11 0 chr5 108118751 108118940 -44418319 - B2_Mm1a SINE B2 -2 191 1 1 1409 414 204 102 0 chr5 108119258 108119346 -44417913 - PB1D10 SINE Alu -20 97 1 1 1409 334 232 43 0 chr5 108119284 108119353 -44417906 - ID_B1 SINE B4 -78 146 75 1 1409 800 194 124 10 chr5 108119617 108119810 -44417449 - B3 SINE B2 0 216 2 1 1409 1354 6 23 6 chr5 108120524 108120700 -44416559 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1409 802 276 32 40 chr5 108120920 108121169 -44416090 + B4A SINE B4 46 292 0 1 1409 1110 37 0 0 chr5 108121452 108121587 -44415672 + (GA)n Simple_repeat Simple_repeat 2 136 0 1 1409 207 0 0 0 chr5 108122194 108122217 -44415042 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 1409 1168 62 0 7 chr5 108122217 108122352 -44414907 - B1_Mm SINE Alu -12 135 1 1 1409 1035 199 44 0 chr5 108122672 108122878 -44414381 - B3 SINE B2 0 216 2 1 1409 359 209 119 37 chr5 108123057 108123168 -44414091 + PB1D7 SINE Alu 5 116 -4 1 1409 211 310 68 45 chr5 108123421 108123509 -44413750 - B2_Mm1t SINE B2 -101 92 3 1 1409 244 226 45 69 chr5 108123523 108123666 -44413593 - L1MEg LINE L1 -4736 1272 1122 1 1409 432 0 0 0 chr5 108123997 108124045 -44413214 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1409 1224 239 117 8 chr5 108124148 108124675 -44412584 + L1MA6 LINE L1 5378 5962 -227 1 1409 383 161 38 145 chr5 108124678 108124809 -44412450 + PB1D10 SINE Alu 1 117 0 1 1409 237 143 165 0 chr5 108124810 108124857 -44412402 - MTE2a LTR MaLR -39 340 287 1 1409 355 292 63 84 chr5 108125173 108125506 -44411753 + L1MA10 LINE L1 5996 6321 -13 1 1409 600 260 84 6 chr5 108125572 108125750 -44411509 - B3A SINE B2 0 198 7 1 1409 360 0 0 0 chr5 108125955 108125995 -44411264 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1409 959 217 15 25 chr5 108126001 108126204 -44411055 - B3 SINE B2 -14 202 2 1 1409 466 233 156 26 chr5 108126240 108126394 -44410865 - B4A SINE B4 -117 175 2 2 1409 653 280 67 0 chr5 108126458 108126608 -44410651 + RSINE1 SINE B4 6 165 0 2 1409 3241 130 95 2 chr5 108126669 108127193 -44410066 + RMER15 LTR ERVL 1 573 -2 2 1409 38 39 0 0 chr5 108127233 108127285 -44409974 + AT_rich Low_complexity Low_complexity 1 52 0 2 1409 289 268 10 40 chr5 108127326 108127427 -44409832 + (TATG)n Simple_repeat Simple_repeat 2 99 0 2 1409 325 342 8 33 chr5 108127431 108127552 -44409707 - RMER12 LTR ERVK -466 856 739 2 1409 485 264 28 0 chr5 108128611 108128717 -44408542 + PB1D7 SINE Alu 2 110 -10 2 1409 790 253 25 19 chr5 108128753 108128914 -44408345 + RSINE1 SINE B4 3 164 -1 2 1409 270 325 28 88 chr5 108128914 108128935 -44408324 + B2_Mm2 SINE B2 2 172 -23 2 1409 1211 41 14 0 chr5 108128983 108129128 -44408131 + B1_Mm SINE Alu 1 147 0 2 1409 342 0 0 0 chr5 108129290 108129328 -44407931 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 2 1409 517 302 173 12 chr5 108129425 108129673 -44407586 + B4 SINE B4 2 289 -3 2 1409 588 70 0 0 chr5 108130435 108130521 -44406738 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 2 1409 588 254 35 55 chr5 108130545 108130745 -44406514 - B3A SINE B2 -1 197 2 2 1409 645 228 14 22 chr5 108130878 108131017 -44406242 + ID_B1 SINE B4 87 224 0 2 1409 279 0 0 0 chr5 108131076 108131107 -44406152 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1409 269 270 0 45 chr5 108131230 108131296 -44405963 + B4A SINE B4 43 105 -187 2 1409 781 277 20 5 chr5 108131491 108131694 -44405565 + B4A SINE B4 86 291 -1 2 1409 270 272 0 21 chr5 108131704 108131798 -44405461 + (CA)n Simple_repeat Simple_repeat 1 92 0 2 1409 444 118 37 62 chr5 108132247 108132328 -44404931 + ID_B1 SINE B4 144 222 -2 2 1409 213 188 20 20 chr5 108132729 108132778 -44404481 - B1F1 SINE Alu -37 112 64 2 1409 322 98 57 38 chr5 108132751 108132804 -44404455 - ID_B1 SINE B4 -27 197 144 2 1409 230 213 44 103 chr5 108132804 108132819 -44404440 - B1F SINE Alu -30 119 56 2 1409 431 282 47 31 chr5 108133286 108133414 -44403845 + B4A SINE B4 163 292 0 2 1409 267 282 39 0 chr5 108133563 108133641 -44403618 - ID4_ SINE ID -2 81 1 2 1409 250 293 0 51 chr5 108133644 108133723 -44403536 - L2a LINE L2 -16 3410 3336 2 1409 930 231 73 49 chr5 108133776 108134103 -44403156 + RLTR15 LTR ERVK 1 335 -24 2 1410 307 277 63 63 chr5 108134502 108134629 -44402630 - MIR3 SINE MIR 0 208 82 2 1410 673 331 99 53 chr5 108134644 108135056 -44402203 + MLT1J2 LTR MaLR 17 447 -1 2 1410 706 294 53 43 chr5 108135075 108135426 -44401833 + MLT2B4 LTR ERVL 3 356 -58 2 1410 343 266 0 48 chr5 108135488 108135571 -44401688 - ID4_ SINE ID 0 83 5 2 1410 308 324 42 35 chr5 108135579 108135723 -44401536 - B1F1 SINE Alu 0 149 5 2 1410 259 95 47 23 chr5 108136001 108136044 -44401215 + MT2B2 LTR ERVL 244 287 -297 2 1410 1147 49 0 0 chr5 108136019 108136161 -44401098 + B1_Mus2 SINE Alu 6 147 0 2 1410 294 95 0 0 chr5 108136161 108136203 -44401056 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 2 1410 369 301 196 36 chr5 108136458 108136682 -44400577 + RMER15 LTR ERVL 302 561 -14 2 1410 226 253 316 13 chr5 108138078 108138154 -44399105 + PB1D10 SINE Alu 17 115 -2 2 1410 325 273 0 0 chr5 108138290 108138367 -44398892 - PB1D9 SINE Alu 0 120 44 2 1410 374 225 11 22 chr5 108138355 108138446 -44398813 - B4 SINE B4 -201 91 2 2 1410 228 329 78 71 chr5 108138868 108139022 -44398237 - RMER15 LTR ERVL -7 568 414 2 1410 469 116 0 0 chr5 108139627 108139696 -44397563 - B3A SINE B2 -129 69 1 2 1410 1026 88 0 7 chr5 108139727 108139864 -44397395 + B1_Mus2 SINE Alu 2 137 -10 2 1410 1047 124 0 0 chr5 108139866 108140157 -44397102 + (GAGAA)n Simple_repeat Simple_repeat 1 291 0 2 1410 189 0 0 0 chr5 108140157 108140178 -44397081 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2 1410 1419 238 96 10 chr5 108140197 108140583 -44396676 - MTD LTR MaLR 0 419 1 2 1410 858 158 0 7 chr5 108140671 108140811 -44396448 + B1_Mus2 SINE Alu 9 147 0 2 1410 240 306 62 0 chr5 108141513 108141603 -44395656 + B1F2 SINE Alu 1 95 -52 2 1410 21 36 0 0 chr5 108141863 108141891 -44395368 + AT_rich Low_complexity Low_complexity 1 28 0 2 1410 444 291 0 9 chr5 108142677 108142788 -44394471 + PB1D10 SINE Alu 8 117 0 2 1410 1538 120 117 19 chr5 108143529 108143793 -44393466 + MTC LTR MaLR 1 290 -131 2 1410 227 244 0 0 chr5 108143943 108143984 -44393275 + C-rich Low_complexity Low_complexity 3 43 0 2 1410 560 261 56 56 chr5 108144128 108144323 -44392936 + B3A SINE B2 2 196 -2 2 1410 243 157 0 0 chr5 108144398 108144449 -44392810 + (GTTTG)n Simple_repeat Simple_repeat 2 52 0 2 1410 2273 15 15 4 chr5 108144477 108144744 -44392515 + L1Md_F3 LINE L1 6300 6569 -15 2 1410 1131 129 21 0 chr5 108144757 108144943 -44392316 - Lx3C LINE L1 -1037 5939 5750 2 1410 423 0 0 0 chr5 108144943 108144990 -44392269 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1410 373 270 129 10 chr5 108145093 108145194 -44392065 + PB1D9 SINE Alu 1 113 -7 2 1410 558 0 0 0 chr5 108145213 108145275 -44391984 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 2 1410 604 269 5 62 chr5 108145277 108145487 -44391772 + B3A SINE B2 1 198 0 2 1410 180 333 32 0 chr5 108146047 108146110 -44391149 + L2c LINE L2 3285 3349 -38 2 1410 444 223 96 10 chr5 108148128 108148232 -44389027 - B1_Mur1 SINE Alu -3 146 34 2 1410 200 300 76 22 chr5 108148729 108148821 -44388438 + MIR SINE MIR 79 175 -87 2 1410 531 0 0 0 chr5 108149363 108149422 -44387837 + (TC)n Simple_repeat Simple_repeat 1 59 0 2 1410 225 0 0 0 chr5 108149780 108149805 -44387454 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2 1410 259 25 50 0 chr5 108151674 108151714 -44385545 + (CCCCCA)n Simple_repeat Simple_repeat 1 42 0 2 1410 189 0 0 0 chr5 108152610 108152631 -44384628 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 2 1410 189 0 0 0 chr5 108155059 108155080 -44382179 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1410 22 88 0 0 chr5 108156818 108156875 -44380384 + AT_rich Low_complexity Low_complexity 1 57 0 2 1410 188 34 0 33 chr5 108156895 108156925 -44380334 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 2 1410 239 235 0 0 chr5 108157430 108157481 -44379778 + CT-rich Low_complexity Low_complexity 5 55 0 2 1410 375 247 12 12 chr5 108159163 108159249 -44378010 + RSINE1 SINE B4 20 105 -60 2 1410 1094 116 51 28 chr5 108159883 108160060 -44377199 - B2_Mm2 SINE B2 -14 181 1 2 1410 375 252 8 17 chr5 108160149 108160266 -44376993 - B1_Mur2 SINE Alu -5 144 28 2 1410 851 238 31 31 chr5 108161406 108161601 -44375658 - ID_B1 SINE B4 0 224 30 2 1410 186 43 0 0 chr5 108161817 108161840 -44375419 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2 1410 372 43 0 0 chr5 108161949 108161995 -44375264 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1410 1270 329 55 24 chr5 108162102 108163098 -44374161 - L1MA4 LINE L1 -368 5932 4829 2 1410 261 210 0 0 chr5 108163098 108163160 -44374099 + CT-rich Low_complexity Low_complexity 4 65 0 2 1410 502 170 365 19 chr5 108163178 108163334 -44373925 - B3 SINE B2 -5 211 2 2 1410 793 209 127 124 chr5 108163587 108163854 -44373405 + Lx8 LINE L1 7047 7314 -159 2 1410 405 156 0 0 chr5 108163854 108163931 -44373328 + (TG)n Simple_repeat Simple_repeat 1 77 0 2 1410 315 154 0 44 chr5 108163944 108164012 -44373247 + Lx8 LINE L1 7407 7471 -2 2 1410 194 288 68 0 chr5 108164236 108164295 -44372964 + MIR SINE MIR 104 166 -96 2 1410 2517 138 39 12 chr5 108164520 108164930 -44372329 + MTC LTR MaLR 1 421 0 2 1410 921 204 198 13 chr5 108165204 108165522 -44371737 + MTEa LTR MaLR 1 377 -2 2 1410 327 25 0 0 chr5 108166012 108166052 -44371207 + (CATA)n Simple_repeat Simple_repeat 1 40 0 2 1410 1534 43 0 21 chr5 108166273 108166463 -44370796 + B2_Mm2 SINE B2 1 186 -9 2 1410 374 248 40 13 chr5 108166491 108166642 -44370617 - L1M4 LINE L1 -851 5295 5141 2 1410 195 42 0 0 chr5 108166647 108166671 -44370588 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2 1410 335 266 0 0 chr5 108166768 108166832 -44370427 + ID_B1 SINE B4 105 168 -56 2 1410 282 308 32 42 chr5 108166832 108166863 -44370396 + PB1D10 SINE Alu 24 117 0 2 1410 349 236 73 7 chr5 108166876 108167010 -44370249 + L1M LINE L1 5284 5426 -758 2 1410 668 238 51 15 chr5 108167375 108167571 -44369688 + B3 SINE B2 4 206 -10 2 1410 294 164 18 0 chr5 108167650 108167705 -44369554 + B3 SINE B2 1 56 -160 2 1410 1130 207 20 27 chr5 108167703 108167941 -44369318 - ID_B1 SINE B4 -50 242 2 2 1410 725 205 127 35 chr5 108168662 108168793 -44368466 - ID_B1 SINE B4 -7 217 69 2 1410 1638 184 56 8 chr5 108168793 108169150 -44368109 - ORR1D1 LTR MaLR 0 374 1 2 1410 725 205 127 35 chr5 108169150 108169215 -44368044 - ID SINE ID -156 68 4 2 1410 814 252 27 54 chr5 108169348 108169679 -44367580 + RLTR15 LTR ERVK 22 343 -16 2 1410 294 239 14 14 chr5 108170060 108170132 -44367127 - ORR1E LTR MaLR -285 74 3 2 1410 264 295 154 0 chr5 108170132 108170202 -44367057 - ORR1E-int LTR MaLR -51 1529 1448 2 1410 580 264 88 0 chr5 108170231 108170356 -44366903 - B1F1 SINE Alu -13 136 1 2 1410 576 251 104 26 chr5 108170356 108170537 -44366722 - ORR1E-int LTR MaLR -118 1462 1267 2 1410 1075 101 12 12 chr5 108170537 108170698 -44366561 + B2_Mm2 SINE B2 2 162 -33 2 1410 186 43 0 0 chr5 108170698 108170721 -44366538 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 1410 942 287 142 33 chr5 108170723 108171796 -44365463 - ORR1E-int LTR MaLR -320 1260 8 2 1410 354 262 233 36 chr5 108171807 108172056 -44365203 - ORR1E LTR MaLR -6 353 56 2 1410 274 355 45 0 chr5 108172528 108172638 -44364621 - PB1 SINE Alu -2 125 11 3 1410 289 260 79 10 chr5 108173389 108173490 -44363769 + MER20 DNA MER1_type 50 157 -62 3 1410 24 67 0 0 chr5 108174037 108174082 -44363177 + AT_rich Low_complexity Low_complexity 1 45 0 3 1410 327 200 53 0 chr5 108174627 108174702 -44362557 + ID4 SINE ID 5 83 0 3 1410 432 275 101 0 chr5 108175060 108175169 -44362090 - PB1 SINE Alu -7 120 1 3 1410 250 288 12 12 chr5 108175310 108175391 -44361868 - ID4_ SINE ID -2 81 1 3 1410 230 270 0 0 chr5 108177819 108177882 -44359377 - L1MC5 LINE L1 -169 7792 7730 3 1410 1057 94 0 7 chr5 108179637 108179776 -44357483 - B1_Mus1 SINE Alu -9 139 2 3 1410 388 247 22 22 chr5 108179938 108180029 -44357230 - PB1D10 SINE Alu -26 91 1 3 1410 251 235 10 0 chr5 108180594 108180692 -44356567 + (CA)n Simple_repeat Simple_repeat 2 100 0 3 1410 1060 204 117 7 chr5 108180692 108180973 -44356286 - Lx7 LINE L1 -280 7416 7105 3 1410 227 262 0 45 chr5 108181072 108181160 -44356099 + (CATA)n Simple_repeat Simple_repeat 3 86 0 3 1410 21 36 0 0 chr5 108181243 108181271 -44355988 + AT_rich Low_complexity Low_complexity 1 28 0 3 1410 1104 196 0 105 chr5 108182080 108182319 -44354940 + B3 SINE B2 1 214 -2 3 1410 210 159 0 83 chr5 108182480 108182528 -44354731 + PB1D7 SINE Alu 77 120 0 3 1410 1131 76 7 0 chr5 108184450 108184595 -44352664 + B1_Mus2 SINE Alu 2 147 0 3 1410 213 81 54 0 chr5 108184595 108184632 -44352627 + (CAAAC)n Simple_repeat Simple_repeat 1 39 0 3 1410 822 126 0 0 chr5 108184850 108184985 -44352274 + (GGAA)n Simple_repeat Simple_repeat 3 137 0 3 1410 388 255 96 19 chr5 108186541 108186645 -44350614 + PB1D10 SINE Alu 6 117 0 3 1410 1291 294 89 36 chr5 108186707 108187405 -44349854 - L1MB7 LINE L1 -90 6094 5360 3 1410 723 170 22 29 chr5 108187455 108187594 -44349665 - B1_Mur4 SINE Alu -12 138 1 3 1410 252 184 0 0 chr5 108187658 108187707 -44349552 + (TATG)n Simple_repeat Simple_repeat 2 50 0 3 1410 216 0 0 0 chr5 108187706 108187730 -44349529 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1410 633 53 0 1 chr5 108187741 108187833 -44349426 - B1_Mur4 SINE Alu -2 148 57 3 1410 281 227 20 137 chr5 108188679 108188698 -44348561 + MT2B LTR ERVL 151 157 -444 3 1410 445 230 11 0 chr5 108188698 108188785 -44348474 + B1_Mur3 SINE Alu 2 89 -60 3 1410 312 361 10 10 chr5 108188785 108188796 -44348463 + B4 SINE B4 87 184 -108 3 1410 474 305 130 24 chr5 108189051 108189259 -44348000 - B4A SINE B4 -22 270 41 3 1410 432 86 0 0 chr5 108189426 108189496 -44347763 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 3 1410 8514 142 20 6 chr5 108190101 108191629 -44345630 + L1_Mur2 LINE L1 4033 5581 -296 3 1410 7771 60 4 2 chr5 108191629 108192606 -44344653 + L1Md_F2 LINE L1 5588 6566 -16 3 1410 215 257 26 9 chr5 108192656 108192770 -44344489 + (TAA)n Simple_repeat Simple_repeat 3 118 0 3 1410 382 263 83 72 chr5 108194288 108194468 -44342791 + B3A SINE B2 1 182 -16 3 1410 407 242 76 3 chr5 108194586 108194705 -44342554 - B1_Mm SINE Alu -22 125 2 3 1410 696 245 115 0 chr5 108195551 108195743 -44341516 + B3 SINE B2 2 215 -1 3 1410 21 36 0 0 chr5 108195778 108195806 -44341453 + AT_rich Low_complexity Low_complexity 1 28 0 3 1410 212 135 0 88 chr5 108195862 108195879 -44341380 + A-rich Low_complexity Low_complexity 4 20 0 3 1410 248 275 130 0 chr5 108195879 108195948 -44341311 + ID4_ SINE ID 3 80 -3 3 1410 212 135 0 88 chr5 108195948 108195987 -44341272 + A-rich Low_complexity Low_complexity 21 55 0 3 1410 496 79 0 87 chr5 108196195 108196390 -44340869 + (CACAG)n Simple_repeat Simple_repeat 2 179 0 3 1410 426 102 77 18 chr5 108196432 108196570 -44340689 + (CAG)n Simple_repeat Simple_repeat 1 147 0 3 1410 658 45 0 87 chr5 108196570 108196765 -44340494 + (CACAG)n Simple_repeat Simple_repeat 3 180 0 3 1410 426 107 72 22 chr5 108196765 108196883 -44340376 + (CAG)n Simple_repeat Simple_repeat 1 123 0 3 1410 421 196 0 125 chr5 108197689 108197817 -44339442 + MT2B LTR ERVL 153 264 -337 3 1410 1090 55 7 7 chr5 108197703 108197851 -44339408 + B1_Mus1 SINE Alu 1 148 0 3 1410 243 218 89 13 chr5 108197925 108198004 -44339255 + L1ME2z LINE L1 6191 6275 -169 3 1410 360 205 39 132 chr5 108198873 108199002 -44338257 - PB1D10 SINE Alu 0 117 1 3 1410 224 192 96 0 chr5 108199441 108199493 -44337766 + B4 SINE B4 29 85 -207 3 1410 450 309 134 27 chr5 108199713 108199936 -44337323 + MLT1K LTR MaLR 339 585 -10 3 1410 229 185 56 84 chr5 108200341 108200412 -44336847 + PB1D9 SINE Alu 52 120 0 3 1410 597 147 129 0 chr5 108200726 108200842 -44336417 - B1_Mur3 SINE Alu -8 141 11 3 1410 294 280 101 18 chr5 108202769 108202878 -44334381 - B1_Mur3 SINE Alu -1 119 2 3 1410 373 250 130 23 chr5 108202937 108203068 -44334191 + RSINE1 SINE B4 15 159 -6 3 1410 780 169 14 21 chr5 108203273 108203418 -44333841 + B1_Mur2 SINE Alu 5 148 -1 3 1410 205 242 30 0 chr5 108203836 108203902 -44333357 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 1410 432 236 64 36 chr5 108203965 108204075 -44333184 - B3A SINE B2 -85 113 1 3 1410 1544 58 0 0 chr5 108204181 108204370 -44332889 - B2_Mm1t SINE B2 -4 189 1 3 1410 1296 56 67 11 chr5 108204546 108204726 -44332533 + B2_Mm2 SINE B2 1 190 -5 3 1410 323 111 191 0 chr5 108204835 108204898 -44332361 + B2_Mm2 SINE B2 114 188 -7 3 1410 21 0 0 0 chr5 108204924 108204945 -44332314 + AT_rich Low_complexity Low_complexity 1 21 0 3 1410 468 199 84 7 chr5 108205265 108205375 -44331884 + PB1D10 SINE Alu 8 120 -29 3 1410 1091 108 16 21 chr5 108205581 108205771 -44331488 + L1_Mus3 LINE L1 6450 6638 0 3 1410 547 271 93 55 chr5 108207100 108207444 -44329815 - L1MC3 LINE L1 -22 7763 7407 3 1410 21 0 0 0 chr5 108208226 108208247 -44329012 + AT_rich Low_complexity Low_complexity 1 21 0 3 1410 308 267 148 28 chr5 108208573 108208681 -44328578 + L2a LINE L2 2836 2956 -463 3 1410 301 98 78 0 chr5 108208813 108208864 -44328395 - B3A SINE B2 -142 56 2 3 1410 259 341 157 25 chr5 108208874 108209148 -44328111 + L2a LINE L2 3112 3421 -5 3 1410 369 234 125 21 chr5 108210161 108210257 -44327002 + ID_B1 SINE B4 84 189 -35 3 1410 270 281 31 0 chr5 108210265 108210329 -44326930 + ID2 SINE ID 1 66 -17 3 1410 214 269 19 0 chr5 108210336 108210388 -44326871 + GA-rich Low_complexity Low_complexity 2 54 0 3 1410 269 227 26 96 chr5 108210605 108210743 -44326516 + L1MA6 LINE L1 6155 6286 -14 3 1410 573 258 33 33 chr5 108210826 108211010 -44326249 + B3 SINE B2 2 185 -31 3 1410 272 327 29 9 chr5 108211064 108211169 -44326090 + PB1D10 SINE Alu 1 107 -10 3 1410 224 355 0 0 chr5 108211195 108211257 -44326002 + ID4_ SINE ID 11 72 -11 3 1410 234 233 33 0 chr5 108211257 108211317 -44325942 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 3 1410 256 280 65 0 chr5 108211679 108211766 -44325493 - PB1D10 SINE Alu -9 108 16 3 1410 1146 75 0 7 chr5 108211798 108211946 -44325313 + B1_Mus2 SINE Alu 1 147 0 3 1410 310 321 92 0 chr5 108212791 108212922 -44324337 + B1F1 SINE Alu 2 144 -5 3 1410 478 81 0 39 chr5 108213036 108213113 -44324146 + MusHAL1 LINE L1 2002 2075 -637 3 1410 1308 104 6 0 chr5 108213113 108213296 -44323963 + B2_Mm1t SINE B2 2 185 -8 3 1410 270 186 30 150 chr5 108213296 108213351 -44323908 + L1_Mur3 LINE L1 3275 3317 -2563 3 1410 4933 99 31 7 chr5 108213323 108214088 -44323171 + Lx LINE L1 5846 6629 -25 3 1410 232 253 132 13 chr5 108214294 108214370 -44322889 + B4 SINE B4 14 98 -194 3 1410 186 43 0 0 chr5 108214522 108214545 -44322714 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1410 213 176 0 0 chr5 108214550 108214584 -44322675 - B1F SINE Alu -113 36 3 3 1410 1268 189 134 41 chr5 108214620 108214962 -44322297 + ORR1D1 LTR MaLR 1 374 0 3 1410 690 221 0 13 chr5 108215023 108215174 -44322085 + B1F SINE Alu 1 149 0 3 1410 216 0 0 0 chr5 108215177 108215201 -44322058 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3 1410 1085 238 104 23 chr5 108215213 108215509 -44321750 + MTD LTR MaLR 3 299 -101 3 1410 645 259 141 0 chr5 108215645 108215830 -44321429 + B3 SINE B2 1 211 -5 3 1410 287 196 82 81 chr5 108216021 108216188 -44321071 + B2_Mm2 SINE B2 27 188 -7 3 1410 707 266 150 48 chr5 108216289 108216806 -44320453 + L1MB3 LINE L1 5593 6163 -20 3 1410 739 253 107 32 chr5 108216823 108217076 -44320183 + B4A SINE B4 3 274 -18 3 1410 285 51 0 0 chr5 108217079 108217118 -44320141 + (CCCCCA)n Simple_repeat Simple_repeat 3 41 0 3 1410 450 329 7 0 chr5 108217432 108217578 -44319681 - MER46C DNA MER2_type -174 164 18 3 1410 652 234 7 21 chr5 108219182 108219322 -44317937 + B1F2 SINE Alu 12 149 0 3 1410 21 0 0 0 chr5 108219569 108219590 -44317669 + AT_rich Low_complexity Low_complexity 1 21 0 3 1410 40 59 0 0 chr5 108219669 108219737 -44317522 + AT_rich Low_complexity Low_complexity 1 68 0 3 1410 421 287 88 0 chr5 108219742 108219878 -44317381 + B1F1 SINE Alu 2 149 0 3 1410 390 42 0 0 chr5 108219907 108219955 -44317304 + (GA)n Simple_repeat Simple_repeat 2 49 0 3 1410 245 154 39 0 chr5 108219950 108220002 -44317257 + GA-rich Low_complexity Low_complexity 2 55 0 4 1410 674 274 0 0 chr5 108220065 108220200 -44317059 + ID_B1 SINE B4 82 216 -8 4 1410 317 350 10 0 chr5 108220677 108220777 -44316482 - PB1D10 SINE Alu -7 110 10 4 1410 1291 100 16 0 chr5 108220777 108220967 -44316292 + B2_Mm2 SINE B2 3 195 0 4 1410 961 268 13 56 chr5 108221064 108221368 -44315891 + B4A SINE B4 2 292 0 4 1410 441 95 0 0 chr5 108221567 108221630 -44315629 + (GAAAA)n Simple_repeat Simple_repeat 4 66 0 4 1410 430 340 21 7 chr5 108221640 108221785 -44315474 + B1F1 SINE Alu 3 149 0 4 1410 263 244 165 35 chr5 108221967 108222052 -44315207 + PB1D10 SINE Alu 1 96 -21 4 1410 571 271 88 14 chr5 108222447 108222664 -44314595 + L1MCc LINE L1 1061 1293 -5130 4 1410 730 253 96 72 chr5 108223259 108223510 -44313749 + MER2 DNA MER2_type 87 343 -2 4 1410 402 269 26 9 chr5 108223768 108223884 -44313375 + MER20 DNA MER1_type 102 219 0 4 1410 512 213 48 32 chr5 108224024 108224136 -44313123 + B1F1 SINE Alu 21 137 -12 4 1410 459 0 0 0 chr5 108224136 108224187 -44313072 + (TAA)n Simple_repeat Simple_repeat 2 52 0 4 1410 512 213 48 32 chr5 108224187 108224200 -44313059 + B1F1 SINE Alu 138 148 -1 4 1410 462 290 110 127 chr5 108224221 108224458 -44312801 + B4A SINE B4 5 237 -55 4 1410 252 260 12 83 chr5 108224991 108225075 -44312184 - PB1 SINE Alu -49 78 1 4 1410 556 284 20 13 chr5 108225171 108225321 -44311938 - RSINE1 SINE B4 -13 152 2 4 1410 989 69 15 15 chr5 108225478 108225611 -44311648 - B1_Mus1 SINE Alu -13 135 3 4 1410 226 303 45 0 chr5 108225875 108225941 -44311318 + B4 SINE B4 2 70 -222 4 1410 744 304 136 0 chr5 108225959 108226327 -44310932 + Lx8 LINE L1 6836 7253 -220 4 1410 1105 88 7 0 chr5 108226328 108226475 -44310784 + B1_Mus1 SINE Alu 1 148 0 4 1410 507 157 0 0 chr5 108226475 108226564 -44310695 + A-rich Low_complexity Low_complexity 1 89 0 4 1410 371 291 52 13 chr5 108226566 108226719 -44310540 + Lx8 LINE L1 7239 7397 -76 4 1410 2132 216 56 32 chr5 108227189 108227783 -44309476 + L1_Mur3 LINE L1 4455 5062 -818 4 1410 336 268 183 0 chr5 108227823 108228004 -44309255 - ID_B1 SINE B4 -4 220 7 4 1410 290 256 173 0 chr5 108228816 108228949 -44308310 + MER33 DNA MER1_type 150 305 -19 4 1410 1368 62 23 0 chr5 108228988 108229165 -44308094 + B2_Mm2 SINE B2 1 181 -14 4 1410 396 0 0 0 chr5 108229359 108229403 -44307856 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1410 371 290 37 0 chr5 108229486 108229593 -44307666 + PB1D10 SINE Alu 1 111 -6 4 1410 232 264 57 0 chr5 108229953 108230006 -44307253 - ID4_ SINE ID -18 65 10 4 1410 1467 259 74 13 chr5 108230410 108230883 -44306376 + Lx6 LINE L1 6959 7460 0 4 1410 1146 114 6 0 chr5 108231746 108231913 -44305346 + ORR1C2 LTR MaLR 1 168 -216 4 1410 24 0 0 0 chr5 108232482 108232506 -44304753 + AT_rich Low_complexity Low_complexity 1 24 0 4 1410 340 266 161 15 chr5 108232636 108232766 -44304493 + B1F1 SINE Alu 1 149 0 4 1410 660 271 77 39 chr5 108233092 108233299 -44303960 - B3A SINE B2 -1 215 1 4 1410 235 170 62 21 chr5 108233264 108233312 -44303947 + RMER21B LTR ERV1 188 237 -605 4 1410 242 319 14 0 chr5 108233369 108233441 -44303818 + tRNA-Ala-GCY_ tRNA tRNA 2 74 -1 4 1410 785 271 62 31 chr5 108234036 108234261 -44302998 + MER2 DNA MER2_type 114 345 0 4 1410 401 338 95 18 chr5 108234581 108234703 -44302556 - L1MC LINE L1 -2878 3268 3133 4 1410 1622 214 64 14 chr5 108234703 108235124 -44302135 + RMER10A LTR ERVL 1 442 0 4 1410 401 338 95 18 chr5 108235124 108235338 -44301921 - L1MC LINE L1 -3014 3132 2906 4 1410 1105 66 0 0 chr5 108237357 108237494 -44299765 - B1_Mm SINE Alu -10 137 1 4 1410 2557 137 10 7 chr5 108237498 108237911 -44299348 + MTC LTR MaLR 8 421 0 4 1410 1206 41 7 0 chr5 108237993 108238140 -44299119 - B1_Mus1 SINE Alu 0 148 1 4 1410 28 61 0 0 chr5 108239461 108239510 -44297749 + AT_rich Low_complexity Low_complexity 1 49 0 4 1410 1218 126 0 5 chr5 108239616 108239800 -44297459 - B2_Mm2 SINE B2 -10 185 3 4 1410 739 249 83 0 chr5 108240627 108240796 -44296463 - ID_B1 SINE B4 -1 223 41 4 1410 1003 214 24 5 chr5 108241695 108241902 -44295357 - B3 SINE B2 0 216 6 4 1410 1231 41 0 0 chr5 108242343 108242489 -44294770 - B1_Mm SINE Alu 0 147 2 4 1410 580 210 4 0 chr5 108242700 108242820 -44294439 + B1_Mus1 SINE Alu 24 147 -2 4 1410 379 304 0 9 chr5 108243430 108243546 -44293713 + PB1D10 SINE Alu 2 116 -1 4 1410 474 250 54 0 chr5 108243774 108243886 -44293373 + PB1D7 SINE Alu 1 118 -2 4 1410 235 349 15 0 chr5 108244244 108244310 -44292949 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 4 1410 296 257 123 14 chr5 108245010 108245148 -44292111 - MER58A DNA MER1_type -8 216 64 4 1410 347 332 55 59 chr5 108245469 108245671 -44291588 + MIR SINE MIR 21 221 -41 4 1410 564 225 0 121 chr5 108246584 108246643 -44290616 + B1_Mur4 SINE Alu 1 59 -91 4 1410 339 89 0 0 chr5 108246643 108246699 -44290560 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1410 564 225 0 121 chr5 108246699 108246796 -44290463 + B1_Mur4 SINE Alu 60 138 -12 4 1410 216 0 0 0 chr5 108246834 108246858 -44290401 + (TGGG)n Simple_repeat Simple_repeat 2 25 0 4 1410 653 76 8 78 chr5 108246859 108246987 -44290272 + Lx LINE L1 6536 6654 0 4 1410 762 156 88 7 chr5 108247069 108247205 -44290054 + B1_Mur1 SINE Alu 3 149 0 4 1410 452 246 154 23 chr5 108247651 108247826 -44289433 - B3 SINE B2 -15 201 4 4 1410 1688 21 0 0 chr5 108248359 108248550 -44288709 - B2_Mm1a SINE B2 -1 192 2 4 1410 28 61 0 0 chr5 108249767 108249816 -44287443 + AT_rich Low_complexity Low_complexity 1 49 0 4 1410 3384 76 0 0 chr5 108249972 108250418 -44286841 + L1Md_T LINE L1 6137 6582 0 4 1410 829 157 28 7 chr5 108251004 108251145 -44286114 - B1_Mur3 SINE Alu 0 149 6 4 1410 183 42 0 0 chr5 108251274 108251298 -44285961 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1410 573 255 46 26 chr5 108251372 108251525 -44285734 + RSINE1 SINE B4 2 157 -8 4 1410 604 246 71 0 chr5 108251675 108251801 -44285458 + RSINE1 SINE B4 3 137 -28 4 1410 249 33 0 0 chr5 108252033 108252063 -44285196 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1410 1195 67 12 0 chr5 108252144 108252308 -44284951 + B2_Mm1t SINE B2 2 167 -26 4 1410 1751 105 93 29 chr5 108252310 108252623 -44284636 + L1_Mus4 LINE L1 6280 6612 -24 4 1410 11465 176 118 65 chr5 108253350 108256469 -44280790 + Lx7 LINE L1 844 4154 -1726 4 1410 477 154 0 13 chr5 108256469 108256548 -44280711 + B1_Mus2 SINE Alu 70 147 0 4 1410 11465 176 118 65 chr5 108256548 108256991 -44280268 + Lx7 LINE L1 4155 4626 -1254 4 1410 315 0 0 0 chr5 108256991 108257026 -44280233 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1410 11465 172 128 69 chr5 108257026 108257285 -44279974 + Lx7 LINE L1 4627 4949 -931 4 1410 673 222 92 84 chr5 108257295 108257556 -44279703 + Lx7 LINE L1 6036 6298 -1398 4 1410 3633 198 75 42 chr5 108257568 108258477 -44278782 + Lx7 LINE L1 6561 7499 -197 4 1410 1136 35 21 0 chr5 108258747 108258890 -44278369 + B1_Mm SINE Alu 2 147 0 4 1410 32 0 0 0 chr5 108260321 108260353 -44276906 + AT_rich Low_complexity Low_complexity 1 32 0 4 1410 299 241 35 0 chr5 108261447 108261505 -44275754 + PB1D10 SINE Alu 51 110 -7 4 1410 180 77 0 0 chr5 108261516 108261542 -44275717 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1410 448 291 49 21 chr5 108261570 108261714 -44275545 + B1F2 SINE Alu 1 148 -1 4 1410 408 257 259 19 chr5 108263013 108263283 -44273976 + Lx8 LINE L1 6873 7207 -266 4 1410 561 293 69 29 chr5 108263930 108264134 -44273125 - MLT1A0 LTR MaLR -10 355 144 4 1410 1717 152 101 3 chr5 108264137 108264492 -44272767 + L1_Mur2 LINE L1 2890 3279 -2598 4 1410 298 269 221 8 chr5 108264620 108264751 -44272508 - MLT1A0 LTR MaLR -206 159 1 4 1410 419 295 114 8 chr5 108264976 108265099 -44272160 + B1F SINE Alu 1 136 -13 4 1410 715 229 25 35 chr5 108265241 108265440 -44271819 + B3A SINE B2 2 198 0 4 1411 254 180 132 57 chr5 108265613 108265719 -44271540 - MER33 DNA MER1_type -5 319 206 4 1411 552 236 0 9 chr5 108265726 108265837 -44271422 - PB1D7 SINE Alu -1 119 10 4 1411 760 148 85 18 chr5 108265896 108266061 -44271198 - B2_Mm2 SINE B2 -5 190 15 4 1411 485 276 30 8 chr5 108266073 108266215 -44271044 - MER33 DNA MER1_type -57 152 1 4 1411 440 124 56 0 chr5 108266725 108266814 -44270445 - L1Md_F2 LINE L1 0 6582 6489 4 1411 612 193 84 26 chr5 108267038 108267192 -44270067 - ORR1D1 LTR MaLR -211 163 1 4 1411 23 0 0 0 chr5 108267347 108267370 -44269889 + AT_rich Low_complexity Low_complexity 1 23 0 4 1411 690 191 34 47 chr5 108267384 108267532 -44269727 + B1_Mur2 SINE Alu 1 146 -3 4 1411 548 225 83 0 chr5 108267566 108267654 -44269605 + B3 SINE B2 84 181 -35 4 1411 434 101 14 0 chr5 108267654 108267723 -44269536 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 1411 548 225 83 0 chr5 108267723 108267754 -44269505 + B3 SINE B2 182 212 -4 4 1411 772 268 54 61 chr5 108268003 108268297 -44268962 + B4A SINE B4 1 292 0 4 1411 214 244 0 0 chr5 108268307 108268352 -44268907 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1411 1108 209 9 23 chr5 108268466 108268682 -44268577 + B3 SINE B2 3 215 -1 4 1411 651 252 0 0 chr5 108268749 108268892 -44268367 + B1_Mm SINE Alu 3 145 -2 4 1411 1042 183 45 5 chr5 108268981 108269179 -44268080 + B3 SINE B2 1 206 -10 4 1411 903 100 167 0 chr5 108269193 108269343 -44267916 + B2_Mm1a SINE B2 1 175 -18 4 1411 34 70 0 11 chr5 108269343 108269411 -44267848 + AT_rich Low_complexity Low_complexity 1 68 0 4 1411 368 228 298 0 chr5 108269411 108269525 -44267734 + B1F1 SINE Alu 2 149 0 4 1411 34 70 0 11 chr5 108269525 108269543 -44267716 + AT_rich Low_complexity Low_complexity 1 18 0 4 1411 736 192 157 6 chr5 108269617 108269795 -44267464 + ID_B1 SINE B4 2 206 -18 4 1411 792 174 0 102 chr5 108269995 108270161 -44267098 + B1_Mur4 SINE Alu 2 150 0 5 1411 1116 62 21 0 chr5 108270165 108270309 -44266950 + B1_Mus1 SINE Alu 2 148 0 5 1411 297 131 0 0 chr5 108270309 108270370 -44266889 + (A)n Simple_repeat Simple_repeat 1 61 0 5 1411 426 220 54 11 chr5 108270465 108270557 -44266702 - B1_Mus2 SINE Alu -43 104 9 5 1411 229 286 14 0 chr5 108270755 108270825 -44266434 + ID4_ SINE ID 1 71 -12 5 1411 679 276 81 5 chr5 108271483 108271680 -44265579 - B3 SINE B2 0 216 5 5 1411 631 226 15 15 chr5 108271774 108271909 -44265350 + B1_Mur2 SINE Alu 15 149 0 5 1411 720 121 101 123 chr5 108271984 108272163 -44265096 + URR1B DNA MER1_type 50 224 -1 5 1411 381 215 75 0 chr5 108272165 108272258 -44265001 + B3 SINE B2 110 209 -7 5 1411 511 218 0 7 chr5 108272300 108272407 -44264852 - B1_Mur2 SINE Alu -33 116 14 5 1411 358 276 68 62 chr5 108272430 108272592 -44264667 + RSINE1 SINE B4 3 165 0 5 1411 1153 116 55 0 chr5 108273231 108273412 -44263847 + B2_Mm2 SINE B2 2 192 -3 5 1411 246 264 19 0 chr5 108273700 108273753 -44263506 + RSINE1 SINE B4 25 78 -87 5 1411 264 211 156 0 chr5 108274311 108274401 -44262858 - L1MC LINE L1 -3742 2404 2301 5 1411 528 223 26 26 chr5 108274435 108274550 -44262709 + PB1D10 SINE Alu 3 117 0 5 1411 1099 202 14 5 chr5 108274738 108274947 -44262312 - B3 SINE B2 0 216 6 5 1411 305 371 82 60 chr5 108275348 108275617 -44261642 + B4 SINE B4 7 281 -11 5 1411 297 289 0 26 chr5 108275705 108275783 -44261476 + ID4_ SINE ID 3 78 -5 5 1411 380 250 111 37 chr5 108276069 108276177 -44261082 + PB1D10 SINE Alu 1 116 -1 5 1411 314 200 250 0 chr5 108276296 108276376 -44260883 - MLT1C LTR MaLR 0 467 368 5 1411 249 250 44 0 chr5 108276378 108276446 -44260813 + ID4_ SINE ID 1 71 -12 5 1411 308 337 69 21 chr5 108276534 108276722 -44260537 + MLT1G3 LTR MaLR 398 594 -1 5 1411 2378 132 59 0 chr5 108276941 108277313 -44259946 + ORR1B1 LTR MaLR 1 394 0 5 1411 1043 199 41 0 chr5 108277323 108277519 -44259740 + B3 SINE B2 2 205 -11 5 1411 27 0 0 0 chr5 108277525 108277552 -44259707 + AT_rich Low_complexity Low_complexity 1 27 0 5 1411 445 296 80 54 chr5 108277871 108278185 -44259074 + L1MB7 LINE L1 5795 6116 -68 5 1411 1340 139 46 9 chr5 108278185 108278402 -44258857 + URR1B DNA MER1_type 1 225 0 5 1411 4203 70 26 2 chr5 108278405 108278974 -44258285 + L1_Mus3 LINE L1 6024 6606 -32 5 1411 883 254 171 3 chr5 108279014 108279306 -44257953 - RMER15 LTR ERVL -26 549 209 5 1411 245 93 47 0 chr5 108279357 108279400 -44257859 - RMER15 LTR ERVL -458 117 73 5 1411 983 258 42 30 chr5 108279400 108279664 -44257595 - Lx9 LINE L1 -317 7327 7061 5 1411 431 129 43 0 chr5 108279673 108279743 -44257516 + Lx9 LINE L1 7405 7477 -167 5 1411 468 35 0 0 chr5 108279756 108279814 -44257445 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1411 295 243 58 0 chr5 108279817 108279920 -44257339 + Lx9 LINE L1 7536 7644 0 5 1411 210 37 0 0 chr5 108280035 108280062 -44257197 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1411 676 297 48 44 chr5 108280089 108280360 -44256899 - B4A SINE B4 -5 287 16 5 1411 1589 173 88 83 chr5 108280398 108280783 -44256476 + MTC LTR MaLR 28 414 -7 5 1411 355 323 0 0 chr5 108280788 108280884 -44256375 - PB1D10 SINE Alu -16 101 6 5 1411 925 210 43 34 chr5 108281180 108281387 -44255872 - B3 SINE B2 -5 211 3 5 1411 727 168 64 21 chr5 108281445 108281585 -44255674 - B1_Mur2 SINE Alu 0 149 4 5 1411 202 209 23 0 chr5 108281593 108281636 -44255623 + GA-rich Low_complexity Low_complexity 5 48 0 5 1411 430 242 16 8 chr5 108281714 108281835 -44255424 - L1MA4 LINE L1 -421 5879 5758 5 1411 855 203 35 15 chr5 108281839 108282039 -44255220 - ORR1D1 LTR MaLR -4 370 167 5 1411 305 290 32 0 chr5 108282042 108282135 -44255124 + GA-rich Low_complexity Low_complexity 3 98 0 5 1411 1445 204 20 47 chr5 108282136 108282480 -44254779 + ORR1C2 LTR MaLR 36 370 -14 5 1411 468 174 0 11 chr5 108282488 108282575 -44254684 - ORR1D1 LTR MaLR -288 86 1 5 1411 3569 228 81 70 chr5 108282575 108283926 -44253333 - ORR1D1-int LTR MaLR 0 1370 6 5 1411 528 284 37 37 chr5 108284229 108284390 -44252869 + RSINE1 SINE B4 3 163 -2 5 1411 706 113 17 0 chr5 108284844 108284959 -44252300 - ORR1A3 LTR MaLR 0 326 210 5 1411 313 274 58 10 chr5 108285052 108285155 -44252104 - PB1D10 SINE Alu -9 108 1 5 1411 360 237 386 58 chr5 108285435 108285719 -44251540 + MTE2b LTR MaLR 1 377 -2 5 1411 902 89 44 0 chr5 108285833 108285968 -44251291 + B1_Mus1 SINE Alu 8 148 0 5 1411 583 267 96 37 chr5 108286052 108286324 -44250935 - L1MB7 LINE L1 -189 5995 5708 5 1411 1399 72 33 6 chr5 108286399 108286580 -44250679 - B2_Mm2 SINE B2 -8 187 2 5 1411 1014 170 37 55 chr5 108286755 108286973 -44250286 + B3 SINE B2 1 214 -2 5 1411 1670 26 0 0 chr5 108286998 108287188 -44250071 + B2_Mm1a SINE B2 2 191 -2 5 1411 3719 73 4 4 chr5 108287425 108287907 -44249352 + L1_Mus1 LINE L1 6085 6566 -1 5 1411 860 162 42 7 chr5 108288256 108288399 -44248860 + B1_Mur4 SINE Alu 3 150 0 5 1411 433 246 39 31 chr5 108288534 108288664 -44248595 - B1F SINE Alu 0 149 19 5 1411 213 324 33 66 chr5 108288664 108288686 -44248573 - ID_B1 SINE B4 0 224 78 5 1411 229 280 72 132 chr5 108288738 108288890 -44248369 + RSINE1 SINE B4 21 163 -2 5 1411 962 125 5 83 chr5 108289117 108289309 -44247950 + B2_Mm2 SINE B2 1 177 -18 5 1411 225 229 57 0 chr5 108289723 108289793 -44247466 - MIRb SINE MIR -14 254 181 5 1411 262 77 346 0 chr5 108289934 108289986 -44247273 + B2_Mm2 SINE B2 50 119 -76 5 1411 1524 58 16 0 chr5 108289987 108290175 -44247084 - B2_Mm2 SINE B2 -4 191 1 5 1411 1472 54 5 11 chr5 108291017 108291205 -44246054 + B2_Mm1t SINE B2 2 188 -5 5 1411 353 266 244 21 chr5 108291356 108291594 -44245665 + B4A SINE B4 2 292 0 5 1411 560 187 92 56 chr5 108291733 108291875 -44245384 + B1_Mur1 SINE Alu 3 149 0 5 1411 487 292 101 13 chr5 108291931 108292080 -44245179 - RSINE1 SINE B4 -1 164 3 5 1411 396 220 117 17 chr5 108292107 108292227 -44245032 + B1_Mur3 SINE Alu 2 133 -16 5 1411 270 246 0 0 chr5 108292310 108292367 -44244892 + ID_B1 SINE B4 142 198 -26 5 1411 532 227 103 70 chr5 108292385 108292570 -44244689 + B3 SINE B2 1 191 -25 5 1411 316 230 54 0 chr5 108293112 108293186 -44244073 + ID_B1 SINE B4 84 161 -63 5 1411 257 278 75 32 chr5 108293186 108293204 -44244055 + B1F2 SINE Alu 3 98 -51 5 1411 755 277 32 18 chr5 108293439 108293656 -44243603 + B4A SINE B4 1 220 -72 5 1411 192 40 0 0 chr5 108293799 108293824 -44243435 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 5 1411 808 43 246 8 chr5 108294116 108294234 -44243025 - B1_Mus1 SINE Alu -2 146 1 5 1411 3085 85 57 53 chr5 108294303 108294776 -44242483 - MT2C_Mm LTR ERVL 0 475 1 5 1411 398 246 73 16 chr5 108294919 108295043 -44242216 - MER5B DNA MER1_type -42 136 6 5 1411 285 316 11 0 chr5 108295618 108295713 -44241546 + HAL1 LINE L1 529 624 -1883 5 1411 785 241 141 42 chr5 108295829 108296163 -44241096 - Tigger7 DNA MER2_type -1949 542 176 5 1411 276 183 158 0 chr5 108296280 108296362 -44240897 - Tigger7 DNA MER2_type -2372 119 25 5 1411 232 218 125 22 chr5 108296406 108296542 -44240717 + ORR1B1-int LTR MaLR 605 754 -755 5 1411 1054 23 0 0 chr5 108296448 108296581 -44240678 + B1_Mus1 SINE Alu 15 147 -1 5 1411 241 169 24 17 chr5 108296871 108296939 -44240320 + PB1 SINE Alu 41 126 -1 5 1411 207 0 0 0 chr5 108297201 108297224 -44240035 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1411 40 73 0 0 chr5 108297723 108297805 -44239454 + GC_rich Low_complexity Low_complexity 1 82 0 5 1411 678 170 74 0 chr5 108298971 108299106 -44238153 + B1_Mus1 SINE Alu 3 147 -1 5 1411 249 237 94 12 chr5 108300289 108300375 -44236884 + L1ME2z LINE L1 5897 5989 -190 5 1411 854 41 195 0 chr5 108300964 108301087 -44236172 + B1_Mus1 SINE Alu 2 148 0 5 1411 318 194 0 0 chr5 108301087 108301154 -44236105 + A-rich Low_complexity Low_complexity 1 67 0 5 1411 243 243 202 18 chr5 108301330 108301439 -44235820 - MER3 DNA MER1_type -80 129 1 5 1411 215 286 152 56 chr5 108301863 108302041 -44235218 - B4A SINE B4 -3 289 95 5 1411 197 33 33 0 chr5 108302232 108302262 -44234997 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1411 1166 42 14 0 chr5 108302262 108302405 -44234854 - B1_Mm SINE Alu -2 145 1 5 1411 209 308 96 22 chr5 108302548 108302684 -44234575 + MIR SINE MIR 90 235 -27 5 1411 284 261 0 14 chr5 108302861 108302931 -44234328 + RSINE1 SINE B4 13 81 -84 5 1411 283 228 73 37 chr5 108303359 108303441 -44233818 - ID_B1 SINE B4 -22 202 118 5 1411 216 97 0 0 chr5 108304313 108304344 -44232915 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 5 1411 247 231 128 0 chr5 108304759 108304772 -44232487 - ID_B1 SINE B4 -7 217 130 5 1411 253 229 0 62 chr5 108304772 108304837 -44232422 - PB1D10 SINE Alu -8 109 49 5 1411 1278 104 11 0 chr5 108304920 108305103 -44232156 + B2_Mm1a SINE B2 1 185 -8 5 1411 585 301 69 6 chr5 108305103 108305277 -44231982 - B3A SINE B2 -12 186 2 5 1411 195 42 0 0 chr5 108305337 108305361 -44231898 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 5 1411 204 227 0 0 chr5 108305641 108305685 -44231574 + (TATG)n Simple_repeat Simple_repeat 4 47 0 5 1411 866 186 68 25 chr5 108305810 108306011 -44231248 + B3 SINE B2 2 210 -6 6 1411 348 179 82 21 chr5 108306256 108306353 -44230906 + B3 SINE B2 114 216 0 6 1411 401 34 0 48 chr5 108306797 108306823 -44230436 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1411 917 139 35 7 chr5 108306823 108306968 -44230291 - B1_Mur4 SINE Alu -1 149 1 6 1411 401 34 0 48 chr5 108306968 108306986 -44230273 + (T)n Simple_repeat Simple_repeat 1 18 0 6 1411 1074 50 49 14 chr5 108306986 108307128 -44230131 - B1_Mus2 SINE Alu 0 147 1 6 1411 401 34 0 48 chr5 108307128 108307144 -44230115 + (T)n Simple_repeat Simple_repeat 1 16 0 6 1411 877 268 19 5 chr5 108307251 108307465 -44229794 - ID_B1 SINE B4 -7 217 1 6 1411 300 294 152 32 chr5 108307555 108307713 -44229546 + MLT1F LTR MaLR 32 208 -340 6 1411 783 232 33 28 chr5 108307898 108308111 -44229148 + B3 SINE B2 3 216 0 6 1411 275 271 9 86 chr5 108308118 108308223 -44229036 + MLT1F LTR MaLR 285 381 -167 6 1411 250 307 20 10 chr5 108308358 108308460 -44228799 - L2a LINE L2 -66 3360 3258 6 1411 1342 82 32 5 chr5 108308463 108308648 -44228611 + B2_Mm2 SINE B2 3 192 -3 6 1411 366 254 51 0 chr5 108308659 108308777 -44228482 + L1MB4 LINE L1 4924 5047 -1099 6 1411 294 185 15 30 chr5 108308778 108308845 -44228414 + ORR1E LTR MaLR 1 66 -293 6 1411 341 214 0 0 chr5 108309199 108309269 -44227990 + L1MB4 LINE L1 5184 5253 -893 6 1411 983 98 14 27 chr5 108309285 108309432 -44227827 + B1_Mur4 SINE Alu 5 149 -1 6 1411 1096 68 0 57 chr5 108309434 108309591 -44227668 + B1_Mus1 SINE Alu 1 148 0 6 1411 202 146 0 24 chr5 108309595 108309637 -44227622 + (CAA)n Simple_repeat Simple_repeat 2 42 0 6 1411 247 242 0 75 chr5 108309653 108309720 -44227539 + PB1D9 SINE Alu 7 68 -52 6 1411 757 249 56 42 chr5 108309965 108310250 -44227009 + L1MB4 LINE L1 5892 6180 0 6 1411 302 250 14 0 chr5 108310261 108310333 -44226926 + ID4 SINE ID 11 83 0 6 1411 663 281 11 17 chr5 108310353 108310509 -44226750 + B3A SINE B2 1 157 -41 6 1411 600 14 0 0 chr5 108310509 108310578 -44226681 + (CA)n Simple_repeat Simple_repeat 1 69 0 6 1411 663 281 11 17 chr5 108310578 108310602 -44226657 + B3A SINE B2 158 180 -18 6 1411 1185 48 7 0 chr5 108310710 108310856 -44226403 + B1_Mus1 SINE Alu 2 148 0 6 1411 276 77 0 0 chr5 108310868 108310907 -44226352 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1411 304 317 255 11 chr5 108310953 108311239 -44226020 - L2a LINE L2 -475 2944 2575 6 1411 1355 79 10 21 chr5 108311239 108311432 -44225827 + B2_Mm1t SINE B2 1 191 -2 6 1411 304 317 255 11 chr5 108311432 108311521 -44225738 - L2a LINE L2 -845 2574 2477 6 1411 1206 55 0 0 chr5 108311752 108311898 -44225361 + B1_Mm SINE Alu 2 147 0 6 1411 938 278 128 29 chr5 108311988 108312440 -44224819 - Lx8 LINE L1 -3 7470 6974 6 1411 426 182 121 0 chr5 108312589 108312688 -44224571 - B4A SINE B4 -180 112 2 6 1411 251 304 97 45 chr5 108312786 108312962 -44224297 - MTEb LTR MaLR 0 379 195 6 1411 907 41 141 0 chr5 108313423 108313544 -44223715 + B1_Mus1 SINE Alu 2 139 -9 6 1411 594 255 112 24 chr5 108313549 108313754 -44223505 + MTD LTR MaLR 197 419 0 6 1411 620 273 0 0 chr5 108313864 108314007 -44223252 + ID_B1 SINE B4 82 224 0 6 1411 713 99 18 0 chr5 108314031 108314142 -44223117 + (GGGA)n Simple_repeat Simple_repeat 4 116 0 6 1411 1196 35 7 0 chr5 108314343 108314484 -44222775 - B1_Mm SINE Alu -5 142 1 6 1411 727 115 53 9 chr5 108314534 108314648 -44222611 + PB1D9 SINE Alu 2 120 0 6 1411 426 121 0 0 chr5 108314648 108314714 -44222545 + (A)n Simple_repeat Simple_repeat 1 66 0 6 1411 384 68 51 0 chr5 108314854 108314913 -44222346 - URR1B DNA MER1_type 0 225 164 6 1411 2729 83 3 3 chr5 108314922 108315310 -44221949 + MTA_Mm LTR MaLR 1 388 -8 6 1411 434 148 0 137 chr5 108315350 108315407 -44221852 - URR1B DNA MER1_type -71 154 113 6 1411 1069 89 7 0 chr5 108315407 108315553 -44221706 - B1_Mus2 SINE Alu 0 147 1 6 1411 434 148 0 137 chr5 108315553 108315612 -44221647 - URR1B DNA MER1_type -113 112 54 6 1411 1008 97 474 0 chr5 108315612 108315825 -44221434 + ORR1A2 LTR MaLR 1 314 -12 6 1411 239 167 89 36 chr5 108315826 108315882 -44221377 - URR1B DNA MER1_type -160 65 7 6 1411 1217 66 84 0 chr5 108316204 108316370 -44220889 + B2_Mm2 SINE B2 1 180 -15 6 1411 741 23 0 0 chr5 108316370 108316457 -44220802 + (GAA)n Simple_repeat Simple_repeat 2 88 0 6 1411 210 358 16 24 chr5 108316499 108316622 -44220637 - L2 LINE L2 -1388 2031 1910 6 1411 224 240 0 39 chr5 108316642 108316694 -44220565 + B3 SINE B2 95 144 -72 6 1411 944 132 275 8 chr5 108316695 108316946 -44220313 - RMER15 LTR ERVL -5 570 254 6 1411 1827 106 36 27 chr5 108316948 108317267 -44219992 + RMER6A LTR ERVK 2 323 -433 6 1411 1756 132 51 6 chr5 108317267 108317603 -44219656 + RLTR15 LTR ERVK 1 351 -8 6 1411 1704 134 8 65 chr5 108317600 108317952 -44219307 + RMER6A LTR ERVK 391 722 -34 6 1411 940 203 78 43 chr5 108317962 108318219 -44219040 - RMER15 LTR ERVL -309 266 1 6 1411 601 276 46 0 chr5 108318219 108318371 -44218888 + B3 SINE B2 48 206 -10 6 1411 21 36 0 0 chr5 108318374 108318402 -44218857 + AT_rich Low_complexity Low_complexity 1 28 0 6 1411 355 252 37 2 chr5 108318408 108318491 -44218768 + B1F SINE Alu 36 120 -28 6 1411 2350 151 117 11 chr5 108318491 108318669 -44218590 - RLTR28B LTR ERVL 0 481 285 6 1411 1052 72 0 28 chr5 108318669 108318812 -44218447 + B1_Mus1 SINE Alu 2 140 -8 6 1411 413 19 19 0 chr5 108318812 108318866 -44218393 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1411 198 0 0 0 chr5 108318866 108318887 -44218372 + (GA)n Simple_repeat Simple_repeat 2 23 0 6 1411 2350 151 117 11 chr5 108318887 108319141 -44218118 - RLTR28B LTR ERVL -197 284 3 6 1411 229 304 18 64 chr5 108319141 108319166 -44218093 + B1_Mus1 SINE Alu 121 140 -8 6 1411 283 229 0 16 chr5 108319187 108319249 -44218010 + ID4_ SINE ID 1 61 -22 6 1411 614 238 103 70 chr5 108319386 108319548 -44217711 + RMER15 LTR ERVL 207 377 -198 6 1411 552 136 261 8 chr5 108319548 108319667 -44217592 - B1_Mur4 SINE Alu 0 150 2 6 1411 614 238 103 70 chr5 108319667 108319785 -44217474 + RMER15 LTR ERVL 378 497 -78 6 1411 1803 169 71 11 chr5 108319785 108320149 -44217110 - MTC LTR MaLR -2 419 34 6 1411 258 268 24 24 chr5 108320162 108320246 -44217013 + RMER15 LTR ERVL 492 575 0 6 1411 21 0 0 0 chr5 108320317 108320338 -44216921 + AT_rich Low_complexity Low_complexity 1 21 0 6 1411 1024 36 0 41 chr5 108320424 108320569 -44216690 + B1_Mus2 SINE Alu 9 147 0 6 1411 1119 85 5 102 chr5 108320812 108321008 -44216251 + B2_Mm2 SINE B2 1 177 -18 6 1411 317 301 0 88 chr5 108321008 108321099 -44216160 + PB1 SINE Alu 36 118 -9 6 1411 1140 68 0 7 chr5 108321208 108321356 -44215903 + B1_Mm SINE Alu 1 147 0 6 1411 218 32 32 0 chr5 108321356 108321387 -44215872 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 6 1411 626 244 98 58 chr5 108321940 108322266 -44214993 - RLTR15 LTR ERVK -20 339 1 6 1411 1185 199 7 56 chr5 108322266 108322515 -44214744 - MYSERV-int LTR ERVK 0 6550 6311 6 1411 1946 35 0 0 chr5 108322515 108322745 -44214514 - L1Md_A LINE L1 -2 6580 6351 6 1411 1185 199 7 56 chr5 108322745 108322798 -44214461 - MYSERV-int LTR ERVK -240 6310 6263 6 1411 885 106 512 0 chr5 108322800 108323046 -44214213 + RMER21A LTR ERV1 1 372 -470 6 1411 1187 51 6 0 chr5 108323051 108323209 -44214050 + B2_Mm1a SINE B2 2 160 -33 6 1411 258 32 0 0 chr5 108323209 108323240 -44214019 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6 1411 207 0 0 0 chr5 108323349 108323372 -44213887 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1411 2213 139 57 68 chr5 108323372 108323843 -44213416 + RMER21A LTR ERV1 482 947 0 6 1411 685 180 7 36 chr5 108323852 108323990 -44213269 + RMER21B LTR ERV1 708 841 -1 6 1411 445 342 60 5 chr5 108323990 108324163 -44213096 + Zaphod DNA Tip100 220 403 -3628 6 1411 437 286 107 51 chr5 108324156 108324333 -44212926 - B3 SINE B2 -27 189 3 6 1411 221 0 35 0 chr5 108324407 108324436 -44212823 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 6 1411 1071 69 0 52 chr5 108324436 108324582 -44212677 - B1_Mus2 SINE Alu -8 139 2 6 1411 1329 57 85 0 chr5 108324594 108324612 -44212647 - B2_Mm1t SINE B2 0 193 176 6 1411 207 0 0 0 chr5 108324612 108324635 -44212624 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 1411 1329 57 85 0 chr5 108324635 108324793 -44212466 - B2_Mm1t SINE B2 -18 175 3 6 1411 414 0 0 0 chr5 108324859 108324905 -44212354 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 6 1411 218 305 60 50 chr5 108324929 108325029 -44212230 - ID_B1 SINE B4 -70 154 54 6 1411 464 245 0 19 chr5 108325118 108325226 -44212033 - B4A SINE B4 0 292 187 6 1411 768 263 24 40 chr5 108325514 108325767 -44211492 + B4A SINE B4 3 251 -41 6 1411 437 245 39 10 chr5 108326013 108326116 -44211143 + PB1D7 SINE Alu 5 110 -10 6 1411 491 320 0 20 chr5 108326120 108326270 -44210989 + RSINE1 SINE B4 2 148 -17 6 1411 222 118 0 0 chr5 108326301 108326335 -44210924 + (GAA)n Simple_repeat Simple_repeat 2 35 0 6 1411 235 191 14 14 chr5 108326395 108326464 -44210795 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1411 1067 112 28 11 chr5 108326754 108326934 -44210325 + URR1A DNA MER1_type 44 226 0 6 1411 1907 133 191 11 chr5 108327228 108327585 -44209674 - MTC LTR MaLR 0 421 1 6 1411 206 222 32 32 chr5 108327613 108327706 -44209553 + (TTTA)n Simple_repeat Simple_repeat 2 94 0 6 1411 346 200 0 14 chr5 108327802 108327873 -44209386 + MTB_Mm LTR MaLR 40 109 -298 6 1411 381 306 9 9 chr5 108327940 108328052 -44209207 - B4A SINE B4 -169 123 12 6 1411 351 141 0 0 chr5 108328166 108328230 -44209029 + (T)n Simple_repeat Simple_repeat 1 64 0 6 1411 1230 41 7 0 chr5 108328232 108328378 -44208881 - B1_Mus2 SINE Alu 0 147 1 6 1411 886 76 122 0 chr5 108328412 108328543 -44208716 - B1_Mus1 SINE Alu -1 147 1 6 1411 386 311 8 8 chr5 108328633 108328756 -44208503 - ID_B1 SINE B4 -23 201 79 6 1411 1167 62 0 0 chr5 108329226 108329370 -44207889 + B1_Mus1 SINE Alu 2 145 -3 6 1411 377 143 70 87 chr5 108330488 108330603 -44206656 + URR1A DNA MER1_type 83 195 -31 6 1411 435 172 115 0 chr5 108331792 108331879 -44205380 - B1_Mus2 SINE Alu -31 116 20 6 1411 367 208 28 0 chr5 108331882 108331954 -44205305 - B1_Mur1 SINE Alu -6 143 70 6 1411 312 186 0 41 chr5 108333006 108333079 -44204180 - B1F2 SINE Alu -77 72 3 6 1411 286 265 0 0 chr5 108333019 108333087 -44204172 - ID_B1 SINE B4 -81 143 76 6 1411 345 47 0 0 chr5 108334327 108334370 -44202889 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1411 623 162 96 37 chr5 108334404 108334539 -44202720 - B1_Mur4 SINE Alu -7 143 1 6 1411 319 216 86 129 chr5 108334546 108334732 -44202527 + MT2B LTR ERVL 87 264 -337 7 1411 915 48 0 8 chr5 108334640 108334767 -44202492 + B1_Mus1 SINE Alu 23 148 0 7 1411 981 23 53 0 chr5 108335542 108335674 -44201585 - B1_Mus2 SINE Alu 0 147 9 7 1411 216 97 0 0 chr5 108336775 108336806 -44200453 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1411 26 0 0 0 chr5 108337145 108337171 -44200088 + AT_rich Low_complexity Low_complexity 1 26 0 7 1411 407 301 80 33 chr5 108339447 108339598 -44197661 - RSINE1 SINE B4 -2 163 6 7 1411 272 313 59 20 chr5 108339651 108339752 -44197507 - PB1D10 SINE Alu -5 112 8 7 1411 369 265 65 47 chr5 108339766 108339873 -44197386 + PB1D10 SINE Alu 1 109 -8 7 1411 266 360 67 42 chr5 108339873 108339884 -44197375 + B4A SINE B4 86 206 -86 7 1411 668 62 31 0 chr5 108339884 108339980 -44197279 + (GAAAA)n Simple_repeat Simple_repeat 2 100 0 7 1411 450 275 71 14 chr5 108340104 108340244 -44197015 - B1F SINE Alu -1 148 1 7 1411 1209 41 0 7 chr5 108340327 108340474 -44196785 + B1_Mm SINE Alu 2 147 0 7 1411 1224 69 97 0 chr5 108341099 108341274 -44195985 + B2_Mm2 SINE B2 2 193 -2 7 1411 494 54 14 0 chr5 108341299 108341373 -44195886 + (TTTTG)n Simple_repeat Simple_repeat 2 76 0 7 1411 919 107 53 0 chr5 108341373 108341504 -44195755 - B1_Mus1 SINE Alu -10 138 1 7 1411 1234 93 35 0 chr5 108342096 108342268 -44194991 + B2_Mm1t SINE B2 2 179 -14 7 1411 385 104 0 5 chr5 108342300 108342365 -44194894 + B2_Mm2 SINE B2 47 109 -107 7 1411 26 30 0 0 chr5 108342373 108342406 -44194853 + AT_rich Low_complexity Low_complexity 1 33 0 7 1411 538 259 13 39 chr5 108342407 108342560 -44194699 - B1F SINE Alu 0 149 1 7 1411 1042 67 12 0 chr5 108342676 108342841 -44194418 + (CA)n Simple_repeat Simple_repeat 2 168 0 7 1411 302 270 40 0 chr5 108342843 108342917 -44194342 - B1F2 SINE Alu -35 114 38 7 1411 1203 137 5 5 chr5 108342942 108343126 -44194133 - B2_Mm2 SINE B2 -11 184 1 7 1411 270 0 0 0 chr5 108343262 108343292 -44193967 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 1411 255 122 6 0 chr5 108343571 108343621 -44193638 + B1_Mur4 SINE Alu 1 53 -97 7 1411 351 0 0 0 chr5 108343621 108343660 -44193599 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1411 203 0 37 0 chr5 108343664 108343691 -44193568 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 7 1411 261 311 0 0 chr5 108343699 108343773 -44193486 + MIRb SINE MIR 22 95 -173 7 1411 469 248 17 17 chr5 108344040 108344155 -44193104 + PB1D10 SINE Alu 3 117 0 7 1411 405 0 0 0 chr5 108344199 108344244 -44193015 + (TAA)n Simple_repeat Simple_repeat 3 47 0 7 1411 612 269 22 28 chr5 108344865 108345045 -44192214 + B3A SINE B2 1 179 -19 7 1411 963 83 7 14 chr5 108345216 108345362 -44191897 + B1_Mur4 SINE Alu 6 150 0 7 1411 1240 47 0 0 chr5 108345820 108345968 -44191291 - B1_Mus1 SINE Alu 0 148 1 7 1411 214 295 81 40 chr5 108346947 108347046 -44190213 + B1F SINE Alu 41 143 -6 7 1411 198 103 0 0 chr5 108347046 108347075 -44190184 + (GGA)n Simple_repeat Simple_repeat 1 29 0 7 1411 298 257 59 45 chr5 108347087 108347237 -44190022 + L1MD LINE L1 2891 3041 -3105 7 1411 383 284 86 0 chr5 108347595 108347711 -44189548 - B1F SINE Alu -13 136 11 7 1411 1050 166 160 108 chr5 108347872 108348121 -44189138 + ORR1D1 LTR MaLR 31 317 -57 7 1411 1136 62 14 0 chr5 108348121 108348266 -44188993 + B1_Mm SINE Alu 1 147 0 7 1411 1050 166 160 108 chr5 108348266 108348284 -44188975 + ORR1D1 LTR MaLR 318 324 -50 7 1411 1395 81 0 16 chr5 108348284 108348472 -44188787 + B2_Mm2 SINE B2 2 186 -9 7 1411 1050 166 160 108 chr5 108348472 108348528 -44188731 + ORR1D1 LTR MaLR 325 372 -2 7 1411 755 124 12 147 chr5 108348539 108348563 -44188696 + B1_Mus1 SINE Alu 1 24 -124 7 1411 3212 80 30 15 chr5 108348563 108349023 -44188236 - L1_Mus3 LINE L1 -1 6637 6171 7 1411 1308 49 48 26 chr5 108349025 108349214 -44188045 - B2_Mm2 SINE B2 0 195 3 7 1411 824 115 15 35 chr5 108349214 108349356 -44187903 + B1_Mur4 SINE Alu 17 149 -1 7 1411 432 0 0 0 chr5 108349358 108349406 -44187853 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 7 1411 420 20 0 0 chr5 108349452 108349501 -44187758 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 1411 252 0 0 0 chr5 108349501 108349528 -44187731 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1411 370 219 13 0 chr5 108350796 108350947 -44186312 + (CA)n Simple_repeat Simple_repeat 2 154 0 7 1411 277 235 15 0 chr5 108350967 108351099 -44186160 + (CA)n Simple_repeat Simple_repeat 1 134 0 7 1411 207 246 0 0 chr5 108351122 108351248 -44186011 + (CA)n Simple_repeat Simple_repeat 1 126 0 7 1411 784 62 0 18 chr5 108351640 108351754 -44185505 - B1_Mus1 SINE Alu -3 145 34 7 1411 589 289 6 50 chr5 108352725 108352907 -44184352 + B3A SINE B2 8 181 -17 7 1411 21 0 0 0 chr5 108353276 108353297 -44183962 + AT_rich Low_complexity Low_complexity 1 21 0 7 1411 24 32 0 0 chr5 108353567 108353598 -44183661 + AT_rich Low_complexity Low_complexity 1 31 0 7 1411 410 198 16 98 chr5 108354060 108354081 -44183178 + MT2B LTR ERVL 142 152 -449 7 1411 690 123 4 1 chr5 108354081 108354189 -44183070 + B1_Mur4 SINE Alu 1 115 -12 7 1411 1111 95 0 0 chr5 108354189 108354336 -44182923 - B1_Mus2 SINE Alu 0 147 1 7 1411 267 31 0 0 chr5 108354408 108354440 -44182819 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1411 601 226 53 0 chr5 108354467 108354600 -44182659 + ID_B1 SINE B4 84 223 -1 7 1411 200 114 45 0 chr5 108354607 108354651 -44182608 + A-rich Low_complexity Low_complexity 3 48 0 7 1411 313 39 19 19 chr5 108355187 108355239 -44182020 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 7 1411 1188 75 0 0 chr5 108355241 108355388 -44181871 - B1_Mus2 SINE Alu 0 147 1 7 1411 369 0 0 0 chr5 108355463 108355504 -44181755 + (CA)n Simple_repeat Simple_repeat 1 41 0 7 1411 295 290 34 51 chr5 108355731 108355967 -44181292 + L1MC5 LINE L1 7296 7527 -434 7 1411 893 227 181 18 chr5 108355984 108356321 -44180938 + Lx9 LINE L1 7247 7638 -6 7 1411 336 199 62 46 chr5 108356337 108356439 -44180820 + PB1D9 SINE Alu 32 150 0 7 1411 342 263 73 48 chr5 108356501 108356625 -44180634 - RSINE1 SINE B4 0 165 39 7 1411 206 47 68 23 chr5 108356649 108356693 -44180566 + (TC)n Simple_repeat Simple_repeat 2 47 0 7 1411 606 28 0 0 chr5 108356694 108356766 -44180493 + (TCCC)n Simple_repeat Simple_repeat 2 73 0 7 1411 3212 131 53 9 chr5 108356904 108357468 -44179791 + RLTR21 LTR ERVK 1 589 -983 7 1411 1219 48 7 0 chr5 108357496 108357642 -44179617 - B1_Mus2 SINE Alu 0 147 1 7 1411 974 130 7 0 chr5 108357657 108357811 -44179448 - B2_Mm2 SINE B2 -14 181 27 7 1411 679 62 488 0 chr5 108357822 108357951 -44179308 - B2_Mm1a SINE B2 0 193 2 7 1411 2166 112 32 21 chr5 108357993 108358368 -44178891 + RLTR21 LTR ERVK 574 952 -620 7 1411 4591 8 0 0 chr5 108358382 108358883 -44178376 - L1Md_A LINE L1 0 6582 6082 7 1411 17394 2 0 0 chr5 108358883 108360973 -44176286 + L1Md_A LINE L1 3981 6070 -512 7 1411 1035 262 51 152 chr5 108360973 108361111 -44176148 + RLTR21 LTR ERVK 937 1100 -472 7 1411 324 83 0 0 chr5 108361111 108361159 -44176100 + (TATG)n Simple_repeat Simple_repeat 3 50 0 7 1411 1035 262 51 152 chr5 108361159 108361728 -44175531 + RLTR21 LTR ERVK 1101 1571 -1 7 1411 395 337 60 5 chr5 108362356 108362541 -44174718 + MER20 DNA MER1_type 1 195 -24 7 1411 641 247 41 0 chr5 108362759 108362929 -44174330 + ID_B1 SINE B4 45 221 -3 7 1411 671 206 162 12 chr5 108362934 108363101 -44174158 + B3 SINE B2 1 192 -24 7 1411 455 227 72 96 chr5 108363132 108363298 -44173961 + RSINE1 SINE B4 4 165 0 7 1411 806 155 0 33 chr5 108363368 108363521 -44173738 + B1_Mur4 SINE Alu 2 149 -1 7 1411 206 42 61 20 chr5 108363599 108363648 -44173611 + (TTG)n Simple_repeat Simple_repeat 1 51 0 7 1411 423 160 128 20 chr5 108363648 108363750 -44173509 - B1_Mur2 SINE Alu -15 134 22 7 1411 666 257 16 21 chr5 108363971 108364158 -44173101 + B4 SINE B4 102 287 -5 7 1411 213 330 22 33 chr5 108364713 108364804 -44172455 - B3A SINE B2 -95 103 14 7 1411 230 0 0 32 chr5 108364830 108364843 -44172416 + (TTTTG)n Simple_repeat Simple_repeat 4 16 0 7 1411 1587 47 5 0 chr5 108364843 108365034 -44172225 - B2_Mm1t SINE B2 0 193 2 7 1411 230 0 0 32 chr5 108365034 108365051 -44172208 + (TTTTG)n Simple_repeat Simple_repeat 2 18 0 7 1411 765 294 61 36 chr5 108365125 108365404 -44171855 - B4A SINE B4 0 292 7 7 1411 1106 65 7 0 chr5 108365644 108365782 -44171477 - B1_Mus1 SINE Alu -9 139 1 7 1411 224 81 0 26 chr5 108365878 108365916 -44171343 - B1_Mus1 SINE Alu -111 37 1 7 1411 352 285 104 31 chr5 108365964 108366127 -44171132 + MER58A DNA MER1_type 12 186 -38 7 1411 214 276 150 31 chr5 108366164 108366291 -44170968 - MIR SINE MIR -117 145 4 7 1411 327 315 13 20 chr5 108366307 108366456 -44170803 - L1M5 LINE L1 -432 5692 5545 7 1411 264 181 40 27 chr5 108366542 108366616 -44170643 - B2_Mm2 SINE B2 -2 193 119 7 1411 359 277 11 46 chr5 108366606 108366693 -44170566 + B3A SINE B2 77 160 -38 7 1411 495 0 0 0 chr5 108366695 108366750 -44170509 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1411 21 0 0 0 chr5 108366754 108366775 -44170484 + AT_rich Low_complexity Low_complexity 1 21 0 7 1411 752 167 0 0 chr5 108366784 108366910 -44170349 + B1_Mus2 SINE Alu 1 126 -21 7 1411 491 225 15 15 chr5 108366969 108367100 -44170159 + B1_Mm SINE Alu 17 147 0 7 1411 2633 150 37 70 chr5 108367594 108367795 -44169464 + RLTR19 LTR ERVK 1 181 -318 7 1411 1425 80 16 0 chr5 108367795 108367982 -44169277 + B2_Mm2 SINE B2 2 191 -4 7 1411 2633 150 37 70 chr5 108367982 108368296 -44168963 + RLTR19 LTR ERVK 182 499 0 7 1411 350 295 75 8 chr5 108368317 108368450 -44168809 + B4A SINE B4 51 192 -100 7 1411 2044 170 41 48 chr5 108368452 108369121 -44168138 + RMER6A LTR ERVK 140 750 -6 7 1411 307 343 81 0 chr5 108369124 108369223 -44168036 - ID_B1 SINE B4 -117 107 1 7 1411 495 0 0 0 chr5 108369311 108369366 -44167893 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 8 1411 1131 52 0 7 chr5 108369367 108369522 -44167737 - B2_Mm2 SINE B2 -41 154 1 8 1411 21 0 0 0 chr5 108369575 108369596 -44167663 + AT_rich Low_complexity Low_complexity 1 21 0 8 1411 306 271 124 27 chr5 108369609 108369795 -44167464 + L1ME1 LINE L1 5960 6163 -16 8 1411 492 126 0 70 chr5 108369968 108370234 -44167025 + GA-rich Low_complexity Low_complexity 1 247 0 8 1411 949 133 14 0 chr5 108371378 108371521 -44165738 - B1_Mur4 SINE Alu -5 145 1 8 1411 1063 64 45 0 chr5 108371568 108371724 -44165535 + B2_Mm2 SINE B2 2 164 -31 8 1411 329 234 138 0 chr5 108371800 108371894 -44165365 - L1MD2 LINE L1 -89 6270 6164 8 1411 737 157 12 114 chr5 108371905 108372071 -44165188 - B1_Mur2 SINE Alu 0 149 1 8 1411 513 195 0 0 chr5 108372104 108372191 -44165068 - RSINE1 SINE B4 -77 88 2 8 1411 303 266 157 21 chr5 108372268 108372430 -44164829 - L1MD1 LINE L1 -136 6043 5886 8 1411 301 180 80 71 chr5 108372439 108372599 -44164660 - B3 SINE B2 -33 162 1 8 1411 238 146 0 0 chr5 108372613 108372654 -44164605 - L1MD1 LINE L1 -358 5884 5844 8 1411 1653 257 133 18 chr5 108372683 108373366 -44163893 + RMER13A LTR ERVK 1 762 -98 8 1411 431 338 145 30 chr5 108373425 108373660 -44163599 + MLT1A1 LTR MaLR 80 341 -67 8 1411 673 300 35 0 chr5 108373811 108374011 -44163248 - L1MD1 LINE L1 -668 5691 5485 8 1411 2127 158 55 3 chr5 108374148 108374510 -44162749 - Lx5 LINE L1 -5 7045 6665 8 1411 749 178 39 0 chr5 108374533 108374662 -44162597 + B1_Mur3 SINE Alu 2 135 -14 8 1411 938 226 51 0 chr5 108374675 108374870 -44162389 - B3 SINE B2 -11 205 1 8 1411 212 195 279 25 chr5 108374877 108374956 -44162303 - PB1D10 SINE Alu -6 111 13 8 1411 1047 228 19 0 chr5 108375203 108375414 -44161845 - B3 SINE B2 -1 215 1 8 1411 237 184 0 58 chr5 108375841 108375893 -44161366 + B1F SINE Alu 43 91 -58 8 1411 1434 248 103 21 chr5 108376671 108376974 -44160285 + L1MB7 LINE L1 5524 5826 -358 8 1411 726 271 35 15 chr5 108376974 108377176 -44160083 + ID_B1 SINE B4 2 207 -17 8 1411 1434 248 103 21 chr5 108377176 108377255 -44160004 + L1MB7 LINE L1 5827 5913 -271 8 1411 1186 101 50 17 chr5 108377255 108377436 -44159823 + B2_Mm1t SINE B2 1 187 -6 8 1411 1434 240 46 14 chr5 108377436 108377513 -44159746 + L1MB7 LINE L1 5914 6023 -148 8 1411 1250 34 7 0 chr5 108377664 108377810 -44159449 + B1_Mm SINE Alu 1 147 0 8 1411 273 109 0 0 chr5 108377812 108377858 -44159401 + (A)n Simple_repeat Simple_repeat 1 46 0 8 1411 1100 270 187 5 chr5 108378385 108378824 -44158435 + Lx8 LINE L1 6859 7377 -96 8 1411 392 279 129 90 chr5 108378852 108379108 -44158151 - MTE2a LTR MaLR -108 271 6 8 1411 23 0 0 0 chr5 108380035 108380058 -44157201 + AT_rich Low_complexity Low_complexity 1 23 0 8 1411 1185 48 0 7 chr5 108380971 108381117 -44156142 - B1_Mus2 SINE Alu -2 145 1 8 1411 793 96 91 52 chr5 108381243 108381397 -44155862 + B2_Mm2 SINE B2 2 161 -34 8 1411 282 29 0 0 chr5 108381397 108381432 -44155827 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 8 1411 579 202 0 0 chr5 108381476 108381590 -44155669 - B1F2 SINE Alu 0 149 36 8 1411 552 219 73 8 chr5 108382475 108382599 -44154660 - RSINE1 SINE B4 -21 144 13 8 1411 335 297 39 10 chr5 108382868 108382970 -44154289 + PB1D10 SINE Alu 2 106 -11 8 1411 917 161 200 0 chr5 108382970 108383150 -44154109 + B3 SINE B2 1 216 0 8 1411 791 146 36 21 chr5 108383174 108383314 -44153945 + B1_Mur4 SINE Alu 9 150 0 8 1411 410 284 8 57 chr5 108383626 108383749 -44153510 - PB1D7 SINE Alu -1 119 3 8 1411 263 234 38 25 chr5 108383853 108383932 -44153327 - ID4_ SINE ID -1 82 3 8 1411 795 237 58 5 chr5 108383959 108384167 -44153092 - ID_B1 SINE B4 0 224 6 8 1411 278 206 192 0 chr5 108384170 108384243 -44153016 - ID_B1 SINE B4 -21 203 117 8 1411 369 221 146 23 chr5 108384314 108384444 -44152815 - L1M5 LINE L1 -368 5796 5651 8 1411 20769 114 11 6 chr5 108384580 108386370 -44150889 + L1_Mm LINE L1 2236 4029 -1854 8 1411 1088 60 161 0 chr5 108386370 108386538 -44150721 + B2_Mm2 SINE B2 1 195 0 8 1411 20769 114 11 6 chr5 108386538 108387882 -44149377 + L1_Mm LINE L1 4030 5385 -498 8 1411 326 302 10 0 chr5 108387959 108388055 -44149204 + B1F1 SINE Alu 1 97 -52 8 1411 629 235 44 38 chr5 108388374 108388533 -44148726 + RSINE1 SINE B4 2 161 -4 8 1411 25 0 0 0 chr5 108388534 108388559 -44148700 + AT_rich Low_complexity Low_complexity 1 25 0 8 1411 357 242 32 48 chr5 108388650 108388776 -44148483 + L1MC1 LINE L1 5845 5968 -365 8 1411 225 326 80 20 chr5 108388818 108388968 -44148291 + L1MC1 LINE L1 6162 6320 -13 8 1411 564 263 34 34 chr5 108388992 108389169 -44148090 + B3 SINE B2 2 178 -38 8 1411 744 213 79 30 chr5 108389201 108389404 -44147855 + B3 SINE B2 4 216 0 8 1411 301 220 154 0 chr5 108389418 108389509 -44147750 + L1M5 LINE L1 3063 3167 -2979 8 1411 329 339 0 56 chr5 108389511 108389636 -44147623 + ID_B1 SINE B4 79 196 -28 8 1411 1419 202 42 18 chr5 108389758 108390090 -44147169 - ORR1D2 LTR MaLR 0 370 31 8 1411 510 233 90 8 chr5 108391525 108391659 -44145600 - B1F SINE Alu -4 145 1 8 1411 378 253 30 78 chr5 108391723 108391890 -44145369 - RSINE1 SINE B4 -4 161 3 8 1411 245 259 0 0 chr5 108391920 108391974 -44145285 + PB1D10 SINE Alu 56 109 -8 8 1411 835 131 14 7 chr5 108392057 108392195 -44145064 + B1_Mur3 SINE Alu 10 148 -1 8 1411 1130 97 79 6 chr5 108392243 108392420 -44144839 - B2_Mm2 SINE B2 -4 191 2 8 1411 294 301 103 37 chr5 108392497 108392711 -44144548 + ORR1E LTR MaLR 3 230 -129 8 1411 238 305 163 68 chr5 108393436 108393700 -44143559 - B4A SINE B4 0 292 4 8 1411 477 178 0 11 chr5 108393792 108393883 -44143376 - RMER19B LTR ERVK 0 902 813 8 1411 1895 146 31 27 chr5 108393890 108394347 -44142912 + MurERV4_19-int LTR ERVK 4326 5205 -575 8 1411 1257 180 87 72 chr5 108394348 108394683 -44142576 + RMER19B LTR ERVK 421 760 -142 8 1411 1201 35 14 0 chr5 108394699 108394844 -44142415 - B1_Mus1 SINE Alu -1 147 1 8 1411 318 67 89 0 chr5 108394848 108394893 -44142366 - MurERV4_19-int LTR ERVK -1049 4731 4683 8 1411 247 100 71 0 chr5 108395005 108395075 -44142184 + T-rich Low_complexity Low_complexity 5 79 0 8 1411 338 277 67 71 chr5 108395453 108395591 -44141668 + B3A SINE B2 76 214 -2 8 1411 1187 266 22 11 chr5 108395621 108395899 -44141360 - B4 SINE B4 -11 281 1 8 1411 232 220 0 39 chr5 108395905 108395957 -44141302 + ID_B1 SINE B4 157 206 -18 8 1411 246 156 0 0 chr5 108395962 108396007 -44141252 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 8 1412 324 206 0 0 chr5 108396546 108396614 -44140645 + L1MA8 LINE L1 6015 6082 -209 8 1412 281 250 150 0 chr5 108396658 108396738 -44140521 + PB1D10 SINE Alu 21 112 -5 8 1412 265 93 0 0 chr5 108396787 108396830 -44140429 + B1_Mur4 SINE Alu 108 150 0 8 1412 1200 48 14 0 chr5 108396863 108397009 -44140250 + B1_Mus1 SINE Alu 1 148 0 8 1412 207 0 0 0 chr5 108397091 108397114 -44140145 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1412 378 321 71 7 chr5 108397119 108397260 -44139999 - B3A SINE B2 -48 150 1 8 1412 293 277 116 0 chr5 108397767 108397879 -44139380 + ID_B1 SINE B4 93 217 -7 8 1412 323 255 176 29 chr5 108397883 108398053 -44139206 + L1M5 LINE L1 5602 5796 -377 8 1412 227 292 0 0 chr5 108398053 108398101 -44139158 - B1F1 SINE Alu -101 48 1 8 1412 636 165 42 34 chr5 108398160 108398279 -44138980 - B1_Mus1 SINE Alu -13 135 16 8 1412 504 0 0 0 chr5 108398279 108398335 -44138924 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1412 731 221 45 39 chr5 108398356 108398535 -44138724 + ORR1D1 LTR MaLR 1 180 -194 8 1412 255 193 35 0 chr5 108398535 108398592 -44138667 + (TCTG)n Simple_repeat Simple_repeat 3 61 0 8 1412 387 184 9 75 chr5 108398592 108398698 -44138561 + ORR1D1 LTR MaLR 164 262 -112 8 1412 1066 163 82 26 chr5 108398831 108399064 -44138195 - ORR1D1 LTR MaLR 0 374 129 8 1412 1408 59 27 5 chr5 108399065 108399253 -44138006 + B2_Mm1t SINE B2 2 193 0 8 1412 982 78 0 7 chr5 108399253 108399395 -44137864 + B2_Mm2 SINE B2 28 168 -27 8 1412 675 193 22 0 chr5 108399402 108399537 -44137722 - ORR1D1 LTR MaLR -232 142 5 8 1412 389 239 44 35 chr5 108399662 108399775 -44137484 - L1MD LINE L1 -950 5196 5083 8 1412 233 289 116 44 chr5 108399859 108400040 -44137219 - Charlie2a DNA MER1_type -2534 327 134 8 1412 477 216 24 57 chr5 108400109 108400232 -44137027 + PB1D9 SINE Alu 2 120 0 8 1412 531 299 36 85 chr5 108400246 108400469 -44136790 + ID_B1 SINE B4 5 216 -8 8 1412 198 0 0 0 chr5 108400522 108400544 -44136715 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 8 1412 230 185 18 18 chr5 108401101 108401156 -44136103 + (GGGTG)n Simple_repeat Simple_repeat 1 55 0 8 1412 429 267 76 0 chr5 108401258 108401389 -44135870 + B1F SINE Alu 2 142 -7 8 1412 366 262 155 24 chr5 108401960 108402128 -44135131 + ID_B1 SINE B4 2 191 -33 8 1412 392 311 73 29 chr5 108402096 108402232 -44135027 + RSINE1 SINE B4 22 163 -2 8 1412 275 175 53 0 chr5 108402268 108402325 -44134934 + ID_B1 SINE B4 148 207 -17 8 1412 912 265 61 4 chr5 108402344 108402624 -44134635 + MTD LTR MaLR 18 313 -106 8 1412 1126 126 70 0 chr5 108402654 108402799 -44134460 - RMER6A LTR ERVK -278 478 328 8 1412 456 19 0 0 chr5 108402799 108402852 -44134407 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1412 1126 126 70 0 chr5 108402852 108402921 -44134338 - RMER6A LTR ERVK -429 327 250 8 1412 2871 49 3 3 chr5 108403123 108403469 -44133790 + ORR1A0 LTR MaLR 1 346 0 8 1412 724 194 60 0 chr5 108403659 108403793 -44133466 + B1_Mur1 SINE Alu 7 148 -1 8 1412 318 108 30 15 chr5 108403883 108403949 -44133310 + GA-rich Low_complexity Low_complexity 4 70 0 9 1412 457 305 114 36 chr5 108403952 108404285 -44132974 + HAL1 LINE L1 1453 1811 -696 9 1412 1175 78 4 225 chr5 108404469 108404718 -44132541 + B2_Mm2 SINE B2 2 195 0 9 1412 978 73 20 7 chr5 108404720 108404871 -44132388 + B2_Mm1t SINE B2 27 179 -14 9 1412 311 129 396 41 chr5 108404874 108404985 -44132274 + B2_Mm2 SINE B2 46 195 0 9 1412 436 212 132 25 chr5 108405105 108405226 -44132033 + B1F SINE Alu 1 134 -15 9 1412 318 125 0 0 chr5 108405242 108405269 -44131990 + (A)n Simple_repeat Simple_repeat 1 27 0 9 1412 1231 27 0 7 chr5 108405269 108405416 -44131843 + B1_Mus2 SINE Alu 1 146 -1 9 1412 318 125 0 0 chr5 108405416 108405452 -44131807 + (A)n Simple_repeat Simple_repeat 1 36 0 9 1412 1166 61 0 20 chr5 108405813 108405963 -44131296 - B1_Mus1 SINE Alu 0 148 2 9 1412 248 261 105 32 chr5 108406257 108406352 -44130907 - LTR84b LTR ERVL -536 225 124 9 1412 1800 146 83 9 chr5 108406619 108406944 -44130315 + ORR1B2 LTR MaLR 3 351 -16 9 1412 238 310 53 9 chr5 108407249 108407363 -44129896 - L2c LINE L2 0 3387 3269 9 1412 270 282 13 0 chr5 108407563 108407641 -44129618 + ID4 SINE ID 5 83 0 9 1412 316 321 14 63 chr5 108408076 108408219 -44129040 + L1MB2 LINE L1 5478 5613 -690 9 1412 1220 48 0 0 chr5 108408407 108408554 -44128705 + B1_Mus2 SINE Alu 1 147 0 9 1412 279 0 0 0 chr5 108408554 108408585 -44128674 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1412 776 184 7 21 chr5 108408749 108408893 -44128366 + B1_Mus1 SINE Alu 1 142 -6 9 1412 252 184 35 44 chr5 108408946 108409060 -44128199 + GA-rich Low_complexity Low_complexity 2 114 0 9 1412 599 206 126 74 chr5 108409072 108409287 -44127972 + L1MB2 LINE L1 5902 6127 -44 9 1412 635 217 65 0 chr5 108409289 108409427 -44127832 + B1_Mur2 SINE Alu 2 148 -1 9 1412 848 220 16 0 chr5 108409456 108409630 -44127629 + B3 SINE B2 3 188 -10 9 1412 570 67 0 0 chr5 108409753 108409828 -44127431 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 9 1412 285 318 45 0 chr5 108409828 108409916 -44127343 - PB1D10 SINE Alu -11 106 15 9 1412 483 242 119 45 chr5 108410421 108410555 -44126704 + B1F2 SINE Alu 6 149 0 9 1412 669 141 58 0 chr5 108410663 108410784 -44126475 + B1_Mur4 SINE Alu 7 134 -16 9 1412 3240 46 13 3 chr5 108411826 108412218 -44125041 - MTA_Mm LTR MaLR 0 396 1 9 1412 738 133 7 82 chr5 108412325 108412346 -44124913 - B1_Mur3 SINE Alu 0 149 137 9 1412 208 0 0 59 chr5 108412346 108412380 -44124879 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 9 1412 738 133 7 82 chr5 108412380 108412505 -44124754 - B1_Mur3 SINE Alu -13 136 14 9 1412 800 238 10 24 chr5 108412665 108412872 -44124387 + B3 SINE B2 9 212 -4 9 1412 258 171 42 28 chr5 108412877 108412949 -44124310 + T-rich Low_complexity Low_complexity 2 74 0 9 1412 938 109 22 0 chr5 108413334 108413472 -44123787 + B1_Mm SINE Alu 5 145 -2 9 1412 528 278 14 14 chr5 108413519 108413665 -44123594 + B1F1 SINE Alu 4 149 0 9 1412 347 226 131 9 chr5 108413754 108413861 -44123398 + ID_B1 SINE B4 98 217 -7 9 1412 378 0 0 0 chr5 108413861 108413903 -44123356 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1412 474 101 0 0 chr5 108414027 108414096 -44123163 + (GGA)n Simple_repeat Simple_repeat 3 71 0 9 1412 278 266 0 0 chr5 108414158 108414222 -44123037 + B4A SINE B4 100 163 -129 9 1412 235 327 120 9 chr5 108414289 108414313 -44122946 + B1F1 SINE Alu 16 135 -14 9 1412 419 250 0 0 chr5 108414313 108414397 -44122862 + ID_B1 SINE B4 127 210 -14 9 1412 453 211 110 0 chr5 108414423 108414532 -44122727 - B1_Mur1 SINE Alu -5 144 24 9 1412 22 35 0 0 chr5 108414543 108414572 -44122687 + AT_rich Low_complexity Low_complexity 1 29 0 9 1412 309 297 106 22 chr5 108415219 108415398 -44121861 - MamSINE1 SINE tRNA -5 285 92 9 1412 210 190 35 0 chr5 108416066 108416124 -44121135 + (CCCG)n Simple_repeat Simple_repeat 2 61 0 9 1412 23 68 0 0 chr5 108416124 108416168 -44121091 + GC_rich Low_complexity Low_complexity 1 44 0 9 1412 180 152 0 0 chr5 108416660 108416693 -44120566 + T-rich Low_complexity Low_complexity 1 33 0 9 1412 291 122 0 0 chr5 108417162 108417203 -44120056 + B1F SINE Alu 1 41 -108 9 1412 1641 31 0 15 chr5 108417298 108417493 -44119766 - B2_Mm1a SINE B2 0 193 2 9 1412 820 258 11 0 chr5 108417514 108417704 -44119555 - B3A SINE B2 -5 193 2 9 1412 242 294 35 52 chr5 108417727 108417842 -44119417 - L2a LINE L2 -42 3384 3272 9 1412 273 288 75 0 chr5 108417866 108417946 -44119313 + ID_B1 SINE B4 80 165 -59 9 1412 510 17 0 0 chr5 108417980 108418039 -44119220 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 9 1412 399 235 0 0 chr5 108418055 108418140 -44119119 + B1_Mur1 SINE Alu 42 126 -23 9 1412 525 202 37 0 chr5 108418260 108418369 -44118890 - PB1D10 SINE Alu -4 113 1 9 1412 210 316 157 41 chr5 108418373 108418667 -44118592 - L2a LINE L2 -1004 2415 2088 9 1412 422 189 10 62 chr5 108418715 108418811 -44118448 + B3 SINE B2 69 159 -57 9 1412 908 151 0 12 chr5 108418814 108419070 -44118189 + (TG)n Simple_repeat Simple_repeat 1 252 0 9 1412 23 33 0 0 chr5 108419093 108419123 -44118136 + AT_rich Low_complexity Low_complexity 1 30 0 9 1412 606 309 36 54 chr5 108419158 108419380 -44117879 + ID_B1 SINE B4 6 223 -1 9 1412 302 270 11 22 chr5 108419381 108419472 -44117787 + GA-rich Low_complexity Low_complexity 1 90 0 9 1412 209 276 26 26 chr5 108419476 108419554 -44117705 - L2a LINE L2 -1480 1939 1862 9 1412 698 333 94 9 chr5 108419617 108419956 -44117303 + Lx8 LINE L1 6859 7226 -247 9 1412 1228 87 0 0 chr5 108420178 108420351 -44116908 - B2_Mm2 SINE B2 -22 173 1 9 1412 827 130 8 8 chr5 108420390 108420522 -44116737 + B1_Mus1 SINE Alu 11 142 -6 9 1412 670 311 94 42 chr5 108420797 108421317 -44115942 - L2a LINE L2 -1828 1591 1045 9 1412 316 244 10 82 chr5 108421507 108421605 -44115654 + ID_B1 SINE B4 80 170 -54 9 1412 257 317 7 92 chr5 108422314 108422388 -44114871 + B4 SINE B4 24 94 -198 9 1412 922 93 72 0 chr5 108422388 108422527 -44114732 + B1_Mur4 SINE Alu 2 150 0 9 1412 257 317 7 92 chr5 108422527 108422605 -44114654 + B4 SINE B4 95 163 -129 9 1412 1520 154 89 29 chr5 108422656 108422970 -44114289 - MTC LTR MaLR -8 413 81 9 1412 1427 51 11 0 chr5 108423023 108423200 -44114059 + B2_Mm1t SINE B2 1 179 -14 9 1412 311 167 0 0 chr5 108423289 108423343 -44113916 + B2_Mm2 SINE B2 48 101 -94 9 1412 219 36 0 0 chr5 108423369 108423397 -44113862 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 9 1412 691 173 83 0 chr5 108423625 108423758 -44113501 - B1_Mur1 SINE Alu 0 149 6 9 1412 455 274 9 9 chr5 108424153 108424267 -44112992 + RSINE1 SINE B4 4 117 -48 9 1412 318 67 0 0 chr5 108424650 108424695 -44112564 + (TA)n Simple_repeat Simple_repeat 2 46 0 9 1412 753 199 15 0 chr5 108424860 108424991 -44112268 + B1_Mur3 SINE Alu 1 133 -16 9 1412 237 43 0 60 chr5 108424996 108425046 -44112213 + (CAAAAA)n Simple_repeat Simple_repeat 3 49 0 9 1412 260 227 29 43 chr5 108425134 108425203 -44112056 + ID4 SINE ID 5 72 -11 9 1412 573 178 93 0 chr5 108425334 108425452 -44111807 + B1_Mur1 SINE Alu 21 149 0 9 1412 764 229 30 38 chr5 108425468 108425686 -44111573 + B3A SINE B2 3 198 0 9 1412 209 209 0 23 chr5 108425810 108425838 -44111421 + polypyrimidine Low_complexity Low_complexity 17 44 0 9 1412 1320 77 55 0 chr5 108425838 108426021 -44111238 - B2_Mm2 SINE B2 -1 194 2 9 1412 209 209 0 23 chr5 108426021 108426036 -44111223 + polypyrimidine Low_complexity Low_complexity 2 16 0 9 1412 512 291 27 13 chr5 108426085 108426235 -44111024 - RSINE1 SINE B4 -2 163 12 9 1412 1296 84 0 0 chr5 108426528 108426707 -44110552 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 9 1412 240 111 0 0 chr5 108426707 108426743 -44110516 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1412 2747 31 65 0 chr5 108427483 108427808 -44109451 + ORR1A1 LTR MaLR 1 346 0 9 1412 522 239 67 7 chr5 108427818 108427953 -44109306 - B1F SINE Alu -1 148 6 9 1412 637 148 92 120 chr5 108428203 108428387 -44108872 - B2_Mm2 SINE B2 -15 180 2 9 1412 259 333 0 44 chr5 108428837 108428848 -44108411 + B4 SINE B4 81 87 -205 9 1412 456 283 0 0 chr5 108428848 108428947 -44108312 + PB1D7 SINE Alu 3 101 -19 9 1412 729 0 0 0 chr5 108428951 108429032 -44108227 + (GA)n Simple_repeat Simple_repeat 2 82 0 9 1412 407 342 78 26 chr5 108429164 108429317 -44107942 + RSINE1 SINE B4 3 163 -2 9 1412 312 326 78 7 chr5 108429364 108429506 -44107753 + HAL1-3A_ME LINE L1 2293 2444 -414 9 1412 266 224 0 0 chr5 108430031 108430080 -44107179 + RSINE1 SINE B4 3 51 -114 9 1412 225 0 0 0 chr5 108430097 108430122 -44107137 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1412 237 173 48 107 chr5 108430301 108430385 -44106874 + RLTR42 LTR ERVK 136 214 -25 9 1412 708 196 7 47 chr5 108430402 108430552 -44106707 + B1_Mus1 SINE Alu 4 147 -1 9 1412 1205 48 0 7 chr5 108430555 108430703 -44106556 + B1_Mus2 SINE Alu 1 147 0 9 1412 429 129 0 0 chr5 108430703 108430773 -44106486 + (A)n Simple_repeat Simple_repeat 1 70 0 9 1412 386 198 32 159 chr5 108430798 108430924 -44106335 + RSINE1 SINE B4 56 165 0 9 1412 378 224 111 8 chr5 108431745 108431862 -44105397 + ID_B1 SINE B4 43 171 -53 9 1412 212 230 180 22 chr5 108431787 108431876 -44105383 + PB1D10 SINE Alu 5 107 -10 9 1412 1222 48 0 7 chr5 108432522 108432669 -44104590 - B1_Mm SINE Alu 0 147 2 9 1412 404 239 33 0 chr5 108432772 108432864 -44104395 + PB1D10 SINE Alu 23 117 0 9 1412 439 321 58 31 chr5 108432859 108433084 -44104175 + LTR84b LTR ERVL 216 446 -315 9 1412 761 284 5 29 chr5 108433615 108433825 -44103434 + B4A SINE B4 2 206 -86 1 1412 358 307 59 20 chr5 108433830 108433983 -44103276 + RSINE1 SINE B4 5 163 -2 1 1412 366 23 0 0 chr5 108434046 108434089 -44103170 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1412 639 220 58 97 chr5 108434405 108434611 -44102648 - B3A SINE B2 0 198 1 1 1412 517 302 0 0 chr5 108434778 108434907 -44102352 - ID_B1 SINE B4 -5 219 91 1 1412 785 247 6 0 chr5 108434948 108435114 -44102145 - B3 SINE B2 -48 168 2 1 1412 884 221 79 20 chr5 108435410 108435613 -44101646 + ID_B1 SINE B4 6 220 -4 1 1412 3032 81 2 10 chr5 108435652 108436062 -44101197 - MTB_Mm LTR MaLR 0 407 1 1 1412 686 245 14 0 chr5 108436063 108436202 -44101057 - B1F1 SINE Alu -7 142 2 1 1412 627 226 73 0 chr5 108436241 108436378 -44100881 - B1_Mur1 SINE Alu -1 148 2 1 1412 225 0 0 0 chr5 108436611 108436636 -44100623 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1 1412 245 305 0 0 chr5 108436636 108436695 -44100564 - PB1D10 SINE Alu -32 85 27 1 1412 1459 225 50 20 chr5 108437159 108437470 -44099789 + ORR1D2 LTR MaLR 1 329 -41 1 1412 2565 204 45 70 chr5 108437470 108438097 -44099162 - RMER19C LTR ERVK 0 611 1 1 1412 1459 225 50 20 chr5 108438097 108438143 -44099116 + ORR1D2 LTR MaLR 330 369 -1 1 1412 549 234 7 62 chr5 108438643 108438702 -44098557 + ID_B1 SINE B4 86 138 -86 1 1412 1605 175 194 114 chr5 108438702 108439244 -44098015 + RMER4B LTR ERVK 1 585 0 1 1412 549 234 7 62 chr5 108439244 108439330 -44097929 + ID_B1 SINE B4 139 223 -1 1 1412 234 0 0 0 chr5 108439402 108439428 -44097831 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1 1412 726 176 0 16 chr5 108439429 108439550 -44097709 - B1_Mur4 SINE Alu -31 119 1 1 1412 234 0 0 0 chr5 108439553 108439579 -44097680 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1 1412 271 202 31 31 chr5 108439884 108439981 -44097278 + (ATGGTG)n Simple_repeat Simple_repeat 3 99 0 1 1412 489 312 6 59 chr5 108439997 108440077 -44097182 - RSINE1 SINE B4 -2 163 84 1 1412 1482 78 16 0 chr5 108440077 108440268 -44096991 - B2_Mm2 SINE B2 -1 194 1 1 1412 489 312 6 59 chr5 108440268 108440357 -44096902 - RSINE1 SINE B4 -82 83 3 1 1412 800 138 0 23 chr5 108440458 108440591 -44096668 - B1_Mus2 SINE Alu -1 146 17 1 1412 201 152 0 0 chr5 108440601 108440634 -44096625 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1 1412 401 185 12 58 chr5 108440669 108440755 -44096504 - ID4 SINE ID 0 83 2 1 1412 287 169 0 112 chr5 108440755 108440824 -44096435 - PB1D10 SINE Alu -7 110 47 1 1412 192 77 0 0 chr5 108440959 108440985 -44096274 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1412 201 74 0 0 chr5 108441265 108441292 -44095967 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1412 411 38 0 0 chr5 108441324 108441377 -44095882 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 1 1412 226 278 153 27 chr5 108441388 108441499 -44095760 - MIRb SINE MIR -34 234 110 1 1412 536 236 9 0 chr5 108442009 108442119 -44095140 + B1F SINE Alu 10 120 -29 1 1412 779 151 22 0 chr5 108442129 108442268 -44094991 + RMER12 LTR ERVK 1 142 -1180 1 1412 262 167 100 0 chr5 108442274 108442334 -44094925 + RLTR22_Mus LTR ERVK 518 583 -1225 1 1412 597 113 476 0 chr5 108442339 108442463 -44094796 + B2_Mm2 SINE B2 2 184 -11 1 1412 1130 85 0 0 chr5 108442548 108442689 -44094570 + B1_Mus2 SINE Alu 2 142 -5 1 1412 216 130 0 0 chr5 108442692 108442738 -44094521 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1412 406 287 29 26 chr5 108442738 108442911 -44094348 + RMER12B LTR ERVK 886 1008 -396 1 1412 1303 14 0 0 chr5 108442978 108443125 -44094134 + B1_Mus2 SINE Alu 1 147 0 1 1412 408 20 0 0 chr5 108443187 108443236 -44094023 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1412 877 172 90 63 chr5 108443236 108443459 -44093800 + RMER12 LTR ERVK 989 1217 -105 1 1412 780 88 0 0 chr5 108443470 108443583 -44093676 + B2_Mm1a SINE B2 75 187 -6 1 1412 631 143 191 0 chr5 108443595 108443721 -44093538 + B1_Mur4 SINE Alu 1 150 0 1 1412 618 307 33 62 chr5 108443791 108444034 -44093225 + B4A SINE B4 51 286 -6 1 1412 659 284 29 5 chr5 108444091 108444296 -44092963 + ID_B1 SINE B4 2 211 -13 1 1412 1120 53 0 0 chr5 108444883 108445016 -44092243 - B1_Mus2 SINE Alu -14 133 1 1 1412 728 282 56 5 chr5 108445043 108445239 -44092020 - B3 SINE B2 -9 207 2 1 1412 1055 80 0 0 chr5 108445486 108445623 -44091636 + B1_Mm SINE Alu 2 138 -9 1 1412 202 0 59 29 chr5 108445623 108445657 -44091602 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1412 823 176 77 0 chr5 108445860 108446030 -44091229 - B3 SINE B2 -14 202 20 1 1412 276 30 0 0 chr5 108446088 108446121 -44091138 + (TCC)n Simple_repeat Simple_repeat 2 34 0 1 1412 301 246 14 0 chr5 108446123 108446192 -44091067 - ID4 SINE ID -13 70 1 1 1412 1223 41 0 0 chr5 108446641 108446787 -44090472 + B1_Mm SINE Alu 2 147 0 1 1412 593 234 77 178 chr5 108447335 108447483 -44089776 - B3A SINE B2 -11 187 38 1 1412 1070 229 0 0 chr5 108447483 108447688 -44089571 + B3 SINE B2 4 208 -8 1 1412 593 234 77 178 chr5 108447688 108447747 -44089512 - B3A SINE B2 -161 37 1 1 1412 280 261 14 28 chr5 108447821 108447892 -44089367 - tRNA-Glu-GAG tRNA tRNA -3 72 3 1 1412 243 0 0 0 chr5 108447916 108447943 -44089316 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1412 408 205 194 16 chr5 108448015 108448139 -44089120 + B1F1 SINE Alu 1 146 -3 1 1412 314 284 25 0 chr5 108448147 108448228 -44089031 + ID_B1 SINE B4 130 212 -12 1 1412 310 277 62 0 chr5 108448331 108448443 -44088816 - ID_B1 SINE B4 -7 217 99 1 1412 274 232 38 152 chr5 108448443 108448456 -44088803 - PB1D7 SINE Alu 0 86 4 1 1412 250 324 0 13 chr5 108448677 108448752 -44088507 + CT-rich Low_complexity Low_complexity 1 74 0 1 1412 420 296 106 0 chr5 108449047 108449189 -44088070 + RSINE1 SINE B4 3 159 -6 1 1412 216 0 0 0 chr5 108449194 108449218 -44088041 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1412 252 86 0 0 chr5 108449480 108449515 -44087744 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1412 227 295 134 15 chr5 108449645 108449779 -44087480 + Charlie22a DNA MER1_type 342 491 0 1 1412 180 0 0 0 chr5 108450080 108450100 -44087159 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1 1412 653 144 59 102 chr5 108450102 108450288 -44086971 - RMER10A LTR ERVL -29 413 236 1 1412 222 256 33 89 chr5 108450475 108450565 -44086694 - PB1D10 SINE Alu -31 86 2 1 1412 232 289 26 88 chr5 108450829 108450943 -44086316 + B3A SINE B2 99 205 -11 1 1412 366 200 116 31 chr5 108450997 108451126 -44086133 + RLTR15 LTR ERVK 1 140 -219 1 1412 498 188 0 35 chr5 108451227 108451343 -44085916 + RLTR15 LTR ERVK 33 144 -215 1 1412 2101 144 93 21 chr5 108451546 108451966 -44085293 + RLTR12A LTR ERVK 2 451 -117 1 1412 652 128 0 0 chr5 108452057 108452166 -44085093 + RLTR12A LTR ERVK 454 562 -6 1 1412 1444 57 23 0 chr5 108452166 108452343 -44084916 + B2_Mm2 SINE B2 1 181 -14 1 1412 528 181 141 8 chr5 108452463 108452591 -44084668 - B1_Mur4 SINE Alu -1 149 5 1 1412 712 238 23 52 chr5 108453522 108453695 -44083564 + B3A SINE B2 1 168 -30 1 1412 219 45 21 43 chr5 108453748 108453795 -44083464 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1 1412 1098 66 0 0 chr5 108453808 108453945 -44083314 + B1_Mm SINE Alu 1 137 -10 1 1412 261 0 0 0 chr5 108453945 108453974 -44083285 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1 1412 460 283 9 0 chr5 108454237 108454350 -44082909 + ID_B1 SINE B4 102 215 -9 1 1412 631 317 11 0 chr5 108454359 108454539 -44082720 + B3A SINE B2 1 182 -16 1 1412 647 158 25 42 chr5 108454562 108454681 -44082578 + PB1D9 SINE Alu 4 120 0 1 1412 303 258 0 0 chr5 108454897 108454963 -44082296 + RSINE1 SINE B4 100 165 0 1 1412 511 234 121 0 chr5 108455186 108455310 -44081949 - ID_B1 SINE B4 -4 220 82 1 1412 858 245 38 19 chr5 108455406 108455618 -44081641 - B3 SINE B2 0 216 1 1 1412 771 215 62 75 chr5 108455828 108456054 -44081205 + ID_B1 SINE B4 2 224 0 1 1412 184 296 98 57 chr5 108456355 108456477 -44080782 - MIRm SINE MIR -88 188 62 1 1412 440 227 109 39 chr5 108456944 108457100 -44080159 - MER20 DNA MER1_type 0 219 53 1 1412 557 228 8 30 chr5 108457469 108457600 -44079659 - B1_Mus2 SINE Alu -19 128 1 1 1412 2633 37 27 144 chr5 108457759 108458169 -44079090 + RLTR10B2 LTR ERVK 4 365 0 1 1412 207 0 0 0 chr5 108458169 108458192 -44079067 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1412 234 207 0 0 chr5 108458194 108458252 -44079007 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1412 791 46 0 0 chr5 108458905 108459013 -44078246 + B1_Mm SINE Alu 2 109 -38 1 1412 318 192 68 0 chr5 108459013 108459086 -44078173 + L1MC3 LINE L1 5872 5949 -1836 1 1412 578 246 98 52 chr5 108459089 108459282 -44077977 + B3A SINE B2 7 208 -8 1 1412 501 297 110 32 chr5 108459290 108459328 -44077931 + L1MC3 LINE L1 5985 6020 -1765 1 1412 839 59 93 0 chr5 108459328 108459446 -44077813 - B1_Mus1 SINE Alu -15 133 5 1 1412 501 297 110 32 chr5 108459446 108459717 -44077542 + L1MC3 LINE L1 6021 6318 -1467 1 1412 1856 161 87 3 chr5 108459751 108460106 -44077153 + MTC LTR MaLR 1 385 -36 1 1412 316 328 38 8 chr5 108460147 108460279 -44076980 + L1MC3 LINE L1 6366 6501 -1284 1 1412 1094 226 125 55 chr5 108460320 108460704 -44076555 - MTD LTR MaLR 0 419 9 1 1412 1161 68 7 0 chr5 108460735 108460882 -44076377 - B1_Mus1 SINE Alu 0 148 1 1 1412 404 327 25 0 chr5 108460887 108461046 -44076213 + ID_B1 SINE B4 62 224 0 1 1412 451 242 0 32 chr5 108461081 108461175 -44076084 + RSINE1 SINE B4 5 95 -70 1 1412 26 0 0 0 chr5 108461214 108461240 -44076019 + AT_rich Low_complexity Low_complexity 1 26 0 1 1412 1449 80 5 0 chr5 108461242 108461430 -44075829 + B2_Mm2 SINE B2 2 190 -5 1 1412 853 161 25 91 chr5 108461442 108461482 -44075777 + B2_Mm2 SINE B2 2 41 -154 1 1412 542 83 443 10 chr5 108461482 108461579 -44075680 + B1_Mus2 SINE Alu 1 139 -8 1 1412 346 36 18 35 chr5 108461579 108461636 -44075623 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1 1412 853 161 25 91 chr5 108461636 108461792 -44075467 + B2_Mm2 SINE B2 42 185 -10 1 1412 1104 88 0 7 chr5 108461803 108461951 -44075308 + B1_Mus1 SINE Alu 2 148 0 1 1412 946 168 39 16 chr5 108462027 108462209 -44075050 + B2_Mm2 SINE B2 2 187 -8 1 1412 819 143 70 14 chr5 108462243 108462385 -44074874 - B1_Mur4 SINE Alu 0 150 1 1 1412 2862 93 50 14 chr5 108462424 108462928 -44074331 + RMER6A LTR ERVK 140 661 -95 1 1412 237 171 40 54 chr5 108462962 108463036 -44074223 - MIR SINE MIR -11 251 179 1 1412 284 253 25 0 chr5 108463038 108463117 -44074142 - ID4_ SINE ID 0 83 3 1 1412 23 0 0 0 chr5 108463395 108463418 -44073841 + AT_rich Low_complexity Low_complexity 1 23 0 1 1412 207 0 0 0 chr5 108463436 108463459 -44073800 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1 1412 1078 64 43 0 chr5 108463504 108463644 -44073615 - B1_Mm SINE Alu 0 147 2 1 1412 243 0 0 0 chr5 108463670 108463697 -44073562 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 1 1412 483 203 115 15 chr5 108463728 108463858 -44073401 - B1F SINE Alu -6 143 1 1 1412 404 262 68 0 chr5 108463903 108464006 -44073253 + RSINE1 SINE B4 12 121 -44 1 1412 902 232 44 10 chr5 108464076 108464281 -44072978 + B3 SINE B2 5 216 0 1 1412 603 170 36 0 chr5 108465122 108465234 -44072025 - PB1D9 SINE Alu 0 120 5 1 1412 28 80 0 11 chr5 108465375 108465400 -44071859 + AT_rich Low_complexity Low_complexity 1 25 0 1 1412 862 167 7 0 chr5 108465400 108465538 -44071721 + B1_Mur2 SINE Alu 1 139 -10 1 1412 28 80 0 11 chr5 108465538 108465600 -44071659 + AT_rich Low_complexity Low_complexity 1 62 0 1 1412 1041 192 19 19 chr5 108465617 108465829 -44071430 - B3 SINE B2 0 216 5 1 1412 459 249 93 6 chr5 108465853 108466051 -44071208 - B4A SINE B4 -18 274 48 1 1412 183 375 52 0 chr5 108466411 108466507 -44070752 - MIRb SINE MIR -50 218 118 1 1412 213 159 23 0 chr5 108466819 108466863 -44070396 + T-rich Low_complexity Low_complexity 5 49 0 1 1412 403 323 12 30 chr5 108466870 108467036 -44070223 - RSINE1 SINE B4 0 165 3 1 1412 340 311 38 0 chr5 108467333 108467439 -44069820 + RSINE1 SINE B4 4 113 -52 1 1412 369 0 0 0 chr5 108467443 108467484 -44069775 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1412 284 105 35 0 chr5 108467488 108467545 -44069714 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 1 1412 964 80 64 14 chr5 108467903 108468043 -44069216 + B1_Mus2 SINE Alu 1 147 0 1 1412 369 0 0 0 chr5 108468044 108468085 -44069174 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 1 1412 1140 68 0 14 chr5 108468206 108468354 -44068905 - B1_Mus2 SINE Alu 0 147 2 1 1412 234 0 0 0 chr5 108468368 108468394 -44068865 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1412 677 185 7 36 chr5 108468394 108468534 -44068725 - B1_Mur1 SINE Alu -13 136 1 1 1412 247 49 24 24 chr5 108468640 108468682 -44068577 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 1 1412 1008 109 0 0 chr5 108468684 108468831 -44068428 + B1_Mus1 SINE Alu 2 148 0 1 1412 502 234 19 0 chr5 108468895 108469002 -44068257 + PB1D9 SINE Alu 3 111 -9 1 1412 215 296 14 0 chr5 108469006 108469077 -44068182 + GA-rich Low_complexity Low_complexity 1 72 0 1 1412 1005 253 107 67 chr5 108469077 108469201 -44068058 - RMER5 LTR ERV1 -34 500 387 1 1412 987 155 0 0 chr5 108469201 108469349 -44067910 - B1_Mur4 SINE Alu -1 149 2 1 1412 1005 253 107 67 chr5 108469349 108469673 -44067586 - RMER5 LTR ERV1 -148 386 34 1 1412 538 269 85 22 chr5 108469828 108470052 -44067207 - MLT1B LTR MaLR 0 390 153 1 1412 1166 69 0 0 chr5 108470055 108470199 -44067060 + B1_Mus2 SINE Alu 1 144 -3 1 1412 192 111 0 0 chr5 108470200 108470236 -44067023 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1412 284 207 34 17 chr5 108470257 108470316 -44066943 + RSINE1 SINE B4 3 62 -103 1 1412 21 0 0 0 chr5 108470366 108470387 -44066872 + AT_rich Low_complexity Low_complexity 1 21 0 1 1412 290 242 112 8 chr5 108470391 108470516 -44066743 - MLT1B LTR MaLR -252 138 1 1 1412 1036 238 62 94 chr5 108470534 108470850 -44066409 - RMER5 LTR ERV1 -24 510 212 1 1412 1287 112 17 0 chr5 108470850 108471028 -44066231 + B2_Mm2 SINE B2 1 181 -14 1 1412 1036 238 62 94 chr5 108471028 108471147 -44066112 - RMER5 LTR ERV1 -323 211 89 1 1412 1371 95 26 0 chr5 108471483 108471672 -44065587 - B2_Mm2 SINE B2 -1 194 1 1 1412 245 265 0 14 chr5 108471954 108472023 -44065236 + RMER5 LTR ERV1 437 504 -30 1 1412 1146 219 0 5 chr5 108472072 108472274 -44064985 + B3 SINE B2 1 201 -15 1 1412 883 234 32 41 chr5 108472274 108472492 -44064767 + B3 SINE B2 1 216 0 1 1412 382 309 172 11 chr5 108472549 108472729 -44064530 + ID_B1 SINE B4 1 209 -15 1 1412 851 115 7 0 chr5 108472731 108472870 -44064389 + (GGA)n Simple_repeat Simple_repeat 3 142 0 1 1412 770 140 0 0 chr5 108472886 108473000 -44064259 + B1_Mus1 SINE Alu 22 135 -13 1 1412 401 250 87 43 chr5 108473604 108473742 -44063517 + RSINE1 SINE B4 2 145 -20 1 1412 567 211 7 53 chr5 108474024 108474173 -44063086 - ID_B1 SINE B4 -47 245 100 1 1412 441 263 43 28 chr5 108474048 108474189 -44063070 - B1F SINE Alu -6 143 1 1 1412 1116 72 0 0 chr5 108474225 108474363 -44062896 + B1_Mus1 SINE Alu 1 138 -10 1 1412 669 25 0 0 chr5 108474363 108474442 -44062817 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 1 1412 293 276 0 0 chr5 108475178 108475236 -44062023 + RSINE1 SINE B4 1 58 -107 1 1412 662 310 150 5 chr5 108475289 108475595 -44061664 - ORR1E LTR MaLR -2 377 1 1 1412 21 0 0 0 chr5 108475614 108475635 -44061624 + AT_rich Low_complexity Low_complexity 1 21 0 1 1412 315 65 0 0 chr5 108475645 108475691 -44061568 + (TTAG)n Simple_repeat Simple_repeat 3 48 0 1 1412 1187 43 0 0 chr5 108475691 108475830 -44061429 - B1_Mus2 SINE Alu -7 140 2 1 1412 302 273 52 0 chr5 108475868 108475945 -44061314 - RSINE1 SINE B4 -9 156 76 1 1412 210 263 0 0 chr5 108476248 108476286 -44060973 + PB1D10 SINE Alu 1 38 -79 1 1412 839 97 0 24 chr5 108476312 108476439 -44060820 + B1_Mus1 SINE Alu 25 148 0 1 1412 1326 85 23 0 chr5 108476456 108476633 -44060626 - B2_Mm2 SINE B2 -14 181 1 1 1412 360 308 33 8 chr5 108476634 108476755 -44060504 + B1F2 SINE Alu 26 149 0 1 1412 1310 91 21 0 chr5 108476790 108476949 -44060310 + B2_Mm1a SINE B2 1 160 -33 1 1412 360 0 0 0 chr5 108476949 108476989 -44060270 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1 1412 1310 91 21 0 chr5 108476989 108477016 -44060243 + B2_Mm1a SINE B2 161 190 -3 1 1412 591 139 0 0 chr5 108477334 108477449 -44059810 + (TC)n Simple_repeat Simple_repeat 2 116 0 1 1412 483 18 0 0 chr5 108477449 108477505 -44059754 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1412 347 0 23 0 chr5 108477626 108477669 -44059590 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 1 1412 229 303 51 26 chr5 108477897 108477975 -44059284 - B3A SINE B2 -115 83 4 1 1412 183 80 0 0 chr5 108478188 108478213 -44059046 + (CTTG)n Simple_repeat Simple_repeat 3 27 0 1 1412 368 250 26 0 chr5 108478224 108478300 -44058959 - B1F1 SINE Alu -71 78 1 1 1412 760 218 14 58 chr5 108478318 108478528 -44058731 - B3A SINE B2 -1 215 8 1 1412 507 143 0 52 chr5 108478575 108478671 -44058588 - PB1D9 SINE Alu -7 113 23 1 1412 234 0 0 0 chr5 108478778 108478804 -44058455 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1412 449 136 308 10 chr5 108478873 108478977 -44058282 + B1_Mus1 SINE Alu 1 135 -13 1 1412 739 147 266 17 chr5 108479914 108480087 -44057172 + B3 SINE B2 1 216 0 1 1412 1360 70 11 16 chr5 108480259 108480448 -44056811 + B2_Mm2 SINE B2 1 188 -7 1 1412 233 0 62 0 chr5 108480778 108480810 -44056449 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1412 1065 51 0 62 chr5 108480810 108480956 -44056303 - B1_Mus1 SINE Alu -10 138 2 1 1412 189 0 0 0 chr5 108481786 108481807 -44055452 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 1 1412 1114 69 14 0 chr5 108481809 108481954 -44055305 - B1_Mm SINE Alu 0 147 1 1 1412 900 116 7 0 chr5 108482124 108482262 -44054997 + RLTR33 LTR ERVK 405 543 -135 1 1412 3905 161 109 10 chr5 108482491 108483288 -44053971 + RMER19B LTR ERVK 1 876 -26 1 1412 1155 62 7 0 chr5 108483288 108483432 -44053827 + B1_Mus2 SINE Alu 1 145 -2 1 1412 389 208 0 37 chr5 108483433 108483497 -44053762 + A-rich Low_complexity Low_complexity 1 64 0 1 1412 1236 101 21 21 chr5 108483497 108483690 -44053569 + B2_Mm1t SINE B2 1 193 0 1 1412 389 208 0 37 chr5 108483690 108483760 -44053499 + A-rich Low_complexity Low_complexity 65 129 0 1 1412 1139 75 0 7 chr5 108483766 108483913 -44053346 + B1_Mm SINE Alu 1 146 -1 1 1412 1543 147 0 4 chr5 108483950 108484202 -44053057 + MTC LTR MaLR 171 421 0 1 1412 476 16 0 0 chr5 108484243 108484304 -44052955 + B1_Mus2 SINE Alu 84 144 -3 1 1412 216 0 0 0 chr5 108484304 108484328 -44052931 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1412 302 270 22 33 chr5 108484374 108484466 -44052793 + B1_Mur1 SINE Alu 46 136 -13 1 1412 236 111 22 0 chr5 108484992 108485037 -44052222 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1412 1283 179 4 16 chr5 108485137 108485376 -44051883 + ORR1D1 LTR MaLR 1 236 -138 1 1412 799 134 145 5 chr5 108485376 108485595 -44051664 - ORR1B1 LTR MaLR 0 394 57 1 1412 329 164 14 29 chr5 108485584 108485653 -44051606 + ORR1D1 LTR MaLR 279 346 -28 1 1412 21 36 0 0 chr5 108485702 108485730 -44051529 + AT_rich Low_complexity Low_complexity 1 28 0 1 1412 468 240 10 0 chr5 108485807 108485903 -44051356 + ID_B1 SINE B4 1 97 -127 1 1412 1148 258 94 6 chr5 108485903 108486231 -44051028 - ORR1D2 LTR MaLR 0 370 14 1 1412 249 40 39 39 chr5 108486394 108486403 -44050856 + (CAAAA)n Simple_repeat Simple_repeat 5 13 0 1 1412 1091 68 0 52 chr5 108486403 108486558 -44050701 + B1_Mm SINE Alu 1 147 0 1 1412 249 40 39 39 chr5 108486558 108486600 -44050659 + (CAAAA)n Simple_repeat Simple_repeat 4 46 0 1 1412 1420 79 26 0 chr5 108486619 108486809 -44050450 + B2_Mm2 SINE B2 1 195 0 1 1412 1039 89 6 43 chr5 108486816 108486980 -44050279 + B2_Mm2 SINE B2 4 161 -34 1 1412 204 40 0 0 chr5 108486980 108487005 -44050254 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1412 283 219 3 42 chr5 108487033 108487134 -44050125 - B1F SINE Alu -46 102 7 1 1412 443 199 43 64 chr5 108487153 108487293 -44049966 - Lx5 LINE L1 0 7050 6914 1 1412 225 0 0 0 chr5 108487370 108487395 -44049864 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1412 645 325 7 77 chr5 108487791 108488088 -44049171 - MT2A LTR ERVL -71 462 187 1 1412 615 164 25 25 chr5 108488124 108488243 -44049016 - B1_Mur4 SINE Alu 0 150 32 1 1412 243 266 101 72 chr5 108488130 108488268 -44048991 - ID_B1 SINE B4 -6 218 77 1 1412 247 267 67 0 chr5 108488355 108488445 -44048814 - B4 SINE B4 -155 137 42 1 1412 216 0 0 0 chr5 108488474 108488498 -44048761 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1412 297 270 10 119 chr5 108488509 108488542 -44048717 - ID_B1 SINE B4 -53 171 146 1 1412 1407 65 5 31 chr5 108488542 108488733 -44048526 - B2_Mm1a SINE B2 -6 187 2 1 1412 297 270 10 119 chr5 108488733 108488800 -44048459 - ID_B1 SINE B4 -79 145 82 1 1412 975 122 13 20 chr5 108488930 108489080 -44048179 + B1_Mur3 SINE Alu 1 149 0 1 1412 367 250 2 0 chr5 108489102 108489198 -44048061 + L1M4 LINE L1 5650 5747 -432 1 1412 21 0 0 0 chr5 108489223 108489244 -44048015 + AT_rich Low_complexity Low_complexity 1 21 0 1 1412 1168 75 0 0 chr5 108489244 108489391 -44047868 - B1_Mus1 SINE Alu 0 148 2 1 1412 2740 100 136 6 chr5 108489452 108489923 -44047336 + RLTR47_MM LTR ERV1 1 532 0 1 1412 1101 54 0 0 chr5 108490264 108490394 -44046865 - B1_Mus2 SINE Alu -17 130 1 1 1412 1506 210 45 211 chr5 108490422 108491133 -44046126 + RMER19C LTR ERVK 19 611 0 1 1412 1392 146 19 56 chr5 108491604 108491873 -44045386 - RLTR19B LTR ERVK 0 715 457 1 1412 680 62 0 0 chr5 108491873 108491970 -44045289 - RLTR19B LTR ERVK -618 97 1 1 1412 1610 146 48 85 chr5 108491977 108492375 -44044884 - RMER10B LTR ERVL -15 383 1 1 1412 766 109 0 25 chr5 108492408 108492530 -44044729 + B1_Mus1 SINE Alu 2 120 -28 1 1412 491 203 48 24 chr5 108492419 108492537 -44044722 + ID_B1 SINE B4 90 212 -12 1 1412 360 0 0 0 chr5 108492537 108492577 -44044682 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 1 1412 1149 114 26 32 chr5 108492724 108492914 -44044345 - B2_Mm2 SINE B2 -6 189 1 1 1412 326 231 69 0 chr5 108492961 108493045 -44044214 - B3 SINE B2 -79 119 21 1 1412 252 0 0 0 chr5 108493045 108493073 -44044186 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1412 410 193 0 6 chr5 108493073 108493240 -44044019 + GA-rich Low_complexity Low_complexity 2 167 0 1 1412 437 189 0 6 chr5 108493255 108493420 -44043839 + GA-rich Low_complexity Low_complexity 1 164 0 1 1412 840 181 0 26 chr5 108493466 108493619 -44043640 + B1_Mur2 SINE Alu 1 149 0 1 1412 216 0 0 0 chr5 108493687 108493711 -44043548 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1412 1138 65 0 0 chr5 108493711 108493849 -44043410 - B1_Mus1 SINE Alu -10 138 1 1 1412 1454 76 0 5 chr5 108496173 108496358 -44040901 - B2_Mm2 SINE B2 -11 184 1 1 1412 474 265 68 0 chr5 108496418 108496550 -44040709 - B1_Mur1 SINE Alu -8 141 1 1 1412 837 48 0 88 chr5 108496635 108496653 -44040606 - B1_Mm SINE Alu 0 147 136 1 1412 336 48 0 0 chr5 108496653 108496695 -44040564 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1 1412 837 48 0 88 chr5 108496695 108496812 -44040447 - B1_Mm SINE Alu -12 135 24 1 1412 21 0 0 0 chr5 108497219 108497240 -44040019 + AT_rich Low_complexity Low_complexity 1 21 0 1 1412 541 250 150 0 chr5 108497268 108497408 -44039851 - B3A SINE B2 -37 161 1 1 1412 1245 68 0 0 chr5 108497513 108497676 -44039583 - B2_Mm2 SINE B2 -32 163 1 1 1412 976 189 14 82 chr5 108497683 108497902 -44039357 - B3 SINE B2 -10 206 3 1 1412 427 287 10 0 chr5 108497920 108498021 -44039238 + ID_B1 SINE B4 120 221 -3 1 1412 1812 175 49 16 chr5 108498094 108498460 -44038799 + MTEb LTR MaLR 2 379 0 1 1412 515 183 211 12 chr5 108499000 108499171 -44038088 + Lx7 LINE L1 7492 7696 0 1 1412 241 180 0 39 chr5 108499202 108499254 -44038005 - ID_B1 SINE B4 -1 223 174 1 1412 2931 172 95 20 chr5 108499354 108499953 -44037306 - Lx9 LINE L1 -607 7037 6394 1 1412 313 286 14 28 chr5 108500000 108500072 -44037187 - RSINE1 SINE B4 -92 73 3 1 1412 810 230 107 0 chr5 108500090 108500277 -44036982 - B3 SINE B2 -1 215 9 2 1412 769 239 87 44 chr5 108500371 108500577 -44036682 + B3 SINE B2 2 216 0 3 1412 730 189 132 61 chr5 108500711 108500860 -44036399 + B3 SINE B2 4 162 -54 4 1412 189 0 0 0 chr5 108500860 108500881 -44036378 + (CATATA)n Simple_repeat Simple_repeat 1 21 0 5 1412 730 189 132 61 chr5 108500881 108500905 -44036354 + B3 SINE B2 163 197 -19 4 1412 1066 48 20 27 chr5 108500905 108501054 -44036205 - B1_Mus1 SINE Alu 0 148 1 6 1412 730 189 132 61 chr5 108501054 108501076 -44036183 + B3 SINE B2 198 213 -3 4 1412 21 0 0 0 chr5 108501234 108501255 -44036004 + AT_rich Low_complexity Low_complexity 1 21 0 7 1412 412 238 89 0 chr5 108501266 108501367 -44035892 - PB1D10 SINE Alu -6 111 2 8 1412 22 70 0 0 chr5 108501377 108501420 -44035839 + AT_rich Low_complexity Low_complexity 1 43 0 9 1412 672 277 36 61 chr5 108501473 108501669 -44035590 - B3 SINE B2 -24 192 2 1 1412 244 294 0 0 chr5 108502058 108502109 -44035150 + PB1D7 SINE Alu 70 120 0 1 1412 1255 27 0 0 chr5 108502781 108502928 -44034331 - B1_Mus1 SINE Alu 0 148 2 1 1412 846 145 51 0 chr5 108502981 108503119 -44034140 - B1_Mur4 SINE Alu -5 145 1 1 1412 671 133 144 30 chr5 108503305 108503437 -44033822 - B1_Mus1 SINE Alu -1 147 1 1 1412 593 279 31 25 chr5 108503456 108503618 -44033641 - RSINE1 SINE B4 0 165 3 1 1412 613 304 66 71 chr5 108503880 108504078 -44033181 + B3A SINE B2 1 197 -1 1 1412 999 84 28 14 chr5 108504112 108504257 -44033002 - B1_Mus1 SINE Alu -1 147 1 1 1412 23 54 0 0 chr5 108504267 108504304 -44032955 + AT_rich Low_complexity Low_complexity 1 37 0 1 1412 497 187 127 27 chr5 108504626 108504736 -44032523 - B1_Mur1 SINE Alu -8 141 21 1 1412 297 167 10 0 chr5 108505142 108505203 -44032056 - B2_Mm2 SINE B2 -102 114 50 2 1412 840 137 8 0 chr5 108505231 108505355 -44031904 - B2_Mm1t SINE B2 -67 126 2 2 1412 899 148 426 4 chr5 108505358 108505635 -44031624 + ORR1B1 LTR MaLR 1 394 0 2 1412 8149 142 83 111 chr5 108505637 108507656 -44029603 + ORR1B1-int LTR MaLR 2 1963 0 2 1412 485 137 264 35 chr5 108507658 108507802 -44029457 + ORR1B1 LTR MaLR 3 179 -215 2 1412 976 250 0 60 chr5 108507867 108508101 -44029158 - ID_B1 SINE B4 -2 222 3 2 1412 262 227 137 127 chr5 108508274 108508404 -44028855 - L1MB4 LINE L1 -147 6033 5892 2 1412 1150 49 7 0 chr5 108508404 108508548 -44028711 - B1_Mus2 SINE Alu -2 145 1 2 1412 262 227 137 127 chr5 108508548 108508614 -44028645 - L1MB4 LINE L1 -289 5891 5835 2 1412 387 222 332 18 chr5 108508842 108508998 -44028261 + B3 SINE B2 1 205 -11 2 1412 477 287 57 0 chr5 108509176 108509298 -44027961 - RSINE1 SINE B4 -29 136 8 2 1412 224 277 15 15 chr5 108509492 108509558 -44027701 - B1F SINE Alu -16 133 68 2 1412 23 0 0 0 chr5 108510083 108510106 -44027153 + AT_rich Low_complexity Low_complexity 1 23 0 2 1412 21 0 0 0 chr5 108510362 108510383 -44026876 + AT_rich Low_complexity Low_complexity 1 21 0 3 1412 820 105 52 22 chr5 108510505 108510641 -44026618 - B1_Mus1 SINE Alu 0 148 9 3 1412 219 139 0 0 chr5 108510712 108510748 -44026511 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1412 684 299 85 11 chr5 108510761 108510950 -44026309 - B3 SINE B2 -13 203 1 3 1412 415 131 248 20 chr5 108511069 108511170 -44026089 + B1_Mus1 SINE Alu 25 148 0 3 1412 806 179 198 16 chr5 108511322 108511504 -44025755 + B3 SINE B2 2 216 0 3 1412 552 138 196 54 chr5 108511525 108511693 -44025566 + B2_Mm2 SINE B2 2 193 -2 3 1412 23 92 0 0 chr5 108511841 108511906 -44025353 + AT_rich Low_complexity Low_complexity 1 65 0 3 1412 45 19 0 0 chr5 108511939 108511991 -44025268 + AT_rich Low_complexity Low_complexity 1 52 0 3 1412 303 306 56 0 chr5 108512001 108512109 -44025150 - B3A SINE B2 -33 165 52 3 1412 1139 66 0 26 chr5 108512111 108512267 -44024992 - B2_Mm1t SINE B2 -6 187 36 4 1412 331 226 43 78 chr5 108512307 108512422 -44024837 - B4A SINE B4 0 292 182 4 1412 229 346 89 41 chr5 108512313 108512393 -44024866 - RMER12 LTR ERVK -30 1292 1190 4 1412 253 29 0 0 chr5 108512393 108512427 -44024832 - B2_Mm1t SINE B2 -158 35 2 4 1412 229 346 89 41 chr5 108512427 108512482 -44024777 - RMER12 LTR ERVK -30 1189 1116 4 1412 535 261 37 15 chr5 108512649 108512785 -44024474 - B1_Mur1 SINE Alu -6 143 5 4 1412 430 293 22 79 chr5 108512839 108513017 -44024242 - B4A SINE B4 0 292 125 4 1412 347 111 319 52 chr5 108513437 108513550 -44023709 - B2_Mm2 SINE B2 -6 189 47 4 1412 970 134 85 0 chr5 108513586 108513750 -44023509 - B2_Mm1t SINE B2 -14 179 2 4 1412 193 336 105 16 chr5 108514093 108514217 -44023042 + MIRc SINE MIR 2 136 -132 4 1412 364 256 97 26 chr5 108514239 108514376 -44022883 + B1F SINE Alu 2 144 -4 4 1412 1101 116 52 0 chr5 108514589 108514761 -44022498 - B2_Mm2 SINE B2 -13 182 2 4 1412 645 219 8 23 chr5 108514812 108514943 -44022316 - B1F2 SINE Alu -16 133 5 5 1412 812 154 8 0 chr5 108514971 108515101 -44022158 - B1_Mur3 SINE Alu -13 136 6 5 1412 227 36 0 0 chr5 108515076 108515104 -44022155 - MT2C_Mm LTR ERVL -240 235 208 5 1412 1377 166 169 22 chr5 108515437 108515757 -44021502 - ORR1B2 LTR MaLR 0 367 1 5 1412 1080 32 82 25 chr5 108516435 108516594 -44020665 + L1Md_F2 LINE L1 6415 6582 0 5 1412 1106 60 135 18 chr5 108517197 108517367 -44019892 - B2_Mm2 SINE B2 -5 190 1 5 1412 217 319 14 0 chr5 108517553 108517622 -44019637 + CT-rich Low_complexity Low_complexity 3 72 0 5 1412 23 0 0 0 chr5 108517880 108517903 -44019356 + AT_rich Low_complexity Low_complexity 1 23 0 5 1412 639 209 117 103 chr5 108517913 108518102 -44019157 - B3A SINE B2 0 198 1 5 1412 189 107 0 0 chr5 108518337 108518365 -44018894 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5 1412 493 199 0 49 chr5 108518368 108518488 -44018771 - B1_Mur3 SINE Alu 0 149 13 6 1412 438 255 122 64 chr5 108518838 108519010 -44018249 + B3A SINE B2 7 188 -10 6 1412 679 253 41 10 chr5 108519016 108519212 -44018047 + B3 SINE B2 1 202 -14 6 1412 266 315 13 40 chr5 108519245 108519321 -44017938 + AluF_3 SINE Alu 137 210 -101 6 1412 714 34 0 0 chr5 108519331 108519420 -44017839 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 6 1412 1235 52 5 60 chr5 108519420 108519604 -44017655 - B2_Mm2 SINE B2 -20 175 2 6 1412 1073 165 55 28 chr5 108519606 108519824 -44017435 - URR1B DNA MER1_type 0 225 2 6 1412 564 29 0 0 chr5 108519887 108519957 -44017302 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 6 1412 1091 70 6 31 chr5 108519957 108520119 -44017140 - B2_Mm2 SINE B2 -36 159 2 6 1412 458 254 58 25 chr5 108520229 108520304 -44016955 + ID SINE ID 9 87 -137 6 1412 245 269 85 85 chr5 108520304 108520422 -44016837 + PB1D9 SINE Alu 1 118 -2 7 1412 1321 57 85 0 chr5 108520425 108520601 -44016658 + B2_Mm1a SINE B2 3 193 0 7 1412 286 305 83 10 chr5 108520949 108521045 -44016214 + PB1D10 SINE Alu 10 112 -5 7 1412 2210 108 21 74 chr5 108521711 108522090 -44015169 - RLTR10D LTR ERVK 0 359 1 7 1412 567 0 0 0 chr5 108523349 108523412 -44013847 + (TTTTA)n Simple_repeat Simple_repeat 3 65 0 7 1412 288 0 0 0 chr5 108523424 108523456 -44013803 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1412 1702 21 0 0 chr5 108523554 108523746 -44013513 - B2_Mm1a SINE B2 0 193 2 7 1412 1103 83 0 0 chr5 108523748 108523892 -44013367 - B1_Mm SINE Alu 0 147 4 7 1412 698 225 0 7 chr5 108523912 108524051 -44013208 - B1_Mus2 SINE Alu -7 140 3 7 1412 648 248 0 7 chr5 108524471 108524609 -44012650 + B1F2 SINE Alu 13 149 0 7 1412 445 280 83 0 chr5 108524821 108524953 -44012306 + ID_B1 SINE B4 33 175 -49 8 1412 605 199 7 78 chr5 108525094 108525236 -44012023 - B1_Mur2 SINE Alu -13 136 5 8 1412 401 161 207 0 chr5 108525583 108525670 -44011589 - U6 snRNA snRNA -2 105 1 8 1412 1283 95 32 0 chr5 108525841 108526030 -44011229 - B2_Mm2 SINE B2 0 195 1 8 1412 336 209 74 42 chr5 108526039 108526134 -44011125 - PB1D9 SINE Alu -21 99 2 8 1412 202 267 83 0 chr5 108527085 108527145 -44010114 + MIR3 SINE MIR 129 193 -15 8 1412 932 146 0 0 chr5 108527314 108527458 -44009801 - B1_Mur4 SINE Alu 0 150 7 8 1412 396 320 12 56 chr5 108527321 108527483 -44009776 - B4A SINE B4 -72 220 66 8 176 757 189 7 13 chr5 108527496 108527646 -44009613 + B1_Mur4 SINE Alu 2 150 0 8 1413 303 295 56 28 chr5 108529379 108529409 -44007850 + ID SINE ID 52 84 -140 8 1413 319 288 105 9 chr5 108529409 108529514 -44007745 + PB1D10 SINE Alu 1 115 -2 9 1413 360 292 124 34 chr5 108530705 108530971 -44006288 - L2 LINE L2 -717 2702 2413 9 1413 21 36 0 0 chr5 108533253 108533281 -44003978 + AT_rich Low_complexity Low_complexity 1 28 0 9 1413 444 221 92 62 chr5 108533548 108533678 -44003581 - B1_Mus1 SINE Alu -14 134 1 9 1413 272 331 117 41 chr5 108533748 108533893 -44003366 - RMER15 LTR ERVL -153 422 267 9 1413 243 0 0 0 chr5 108533943 108533970 -44003289 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1413 598 119 91 9 chr5 108533970 108534080 -44003179 - PB1D9 SINE Alu 0 120 2 9 1413 24 0 0 0 chr5 108534387 108534411 -44002848 + AT_rich Low_complexity Low_complexity 1 24 0 9 1413 614 276 51 29 chr5 108534474 108534649 -44002610 + B3A SINE B2 14 192 -6 9 1413 686 73 0 10 chr5 108534789 108534886 -44002373 - B2_Mm2 SINE B2 -92 103 8 9 1413 502 215 92 8 chr5 108534999 108535130 -44002129 - B1_Mus1 SINE Alu -2 146 5 1 1413 264 100 0 0 chr5 108535130 108535170 -44002089 + (CCCCCA)n Simple_repeat Simple_repeat 3 42 0 1 1413 238 342 13 0 chr5 108535199 108535278 -44001981 - ID4 SINE ID 0 83 4 1 1413 222 325 106 24 chr5 108535416 108535450 -44001809 + B4 SINE B4 55 98 -194 1 1413 247 235 144 58 chr5 108535450 108535554 -44001705 + PB1D7 SINE Alu 1 113 -7 1 1413 222 214 0 0 chr5 108537203 108537259 -44000000 + T-rich Low_complexity Low_complexity 3 58 0 1 1413 198 0 0 0 chr5 108538808 108538830 -43998429 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1413 198 0 0 0 chr5 108538830 108538851 -43998408 + (GA)n Simple_repeat Simple_repeat 1 22 0 1 1413 23 33 0 0 chr5 108539446 108539476 -43997783 + AT_rich Low_complexity Low_complexity 1 30 0 1 1413 432 257 28 19 chr5 108539482 108539589 -43997670 + PB1D10 SINE Alu 1 108 -9 1 1413 1095 76 0 7 chr5 108539626 108539772 -43997487 + B1_Mus2 SINE Alu 1 145 -2 1 1413 1492 35 0 0 chr5 108539942 108540115 -43997144 + B2_Mm1a SINE B2 2 174 -19 1 1413 367 176 333 0 chr5 108540788 108540890 -43996369 - B1_Mur4 SINE Alu -10 140 5 1 1413 491 131 203 83 chr5 108540911 108541044 -43996215 + B1_Mur4 SINE Alu 2 150 0 1 1413 716 99 11 13 chr5 108541814 108541925 -43995334 + B1_Mus2 SINE Alu 19 147 0 1 1413 467 244 96 7 chr5 108542008 108542144 -43995115 + B1_Mur2 SINE Alu 2 149 0 1 1413 602 326 100 4 chr5 108542164 108542404 -43994855 + B4A SINE B4 1 263 -29 1 1413 223 227 0 0 chr5 108542956 108543007 -43994252 + T-rich Low_complexity Low_complexity 16 66 0 1 1413 604 98 196 83 chr5 108543007 108543140 -43994119 - B1_Mus1 SINE Alu 0 148 1 1 1413 223 227 0 0 chr5 108543140 108543154 -43994105 + T-rich Low_complexity Low_complexity 2 15 0 1 1413 653 192 25 88 chr5 108543154 108543314 -43993945 - B1_Mur4 SINE Alu 0 150 1 1 1413 346 290 44 30 chr5 108543349 108543484 -43993775 + MTE-int LTR MaLR 66 202 -1378 1 1413 757 143 31 31 chr5 108543490 108543620 -43993639 + B1_Mus1 SINE Alu 10 139 -9 1 1413 622 284 85 53 chr5 108543766 108544049 -43993210 - B4A SINE B4 0 292 1 1 1413 326 300 63 9 chr5 108544397 108544508 -43992751 - PB1D9 SINE Alu -3 117 1 1 1413 425 285 90 0 chr5 108545348 108545492 -43991767 - B3A SINE B2 -6 192 36 1 1413 22 56 0 0 chr5 108545503 108545539 -43991720 + AT_rich Low_complexity Low_complexity 1 36 0 1 1413 584 282 27 49 chr5 108545539 108545703 -43991556 - ID_B1 SINE B4 -4 220 59 1 1413 893 123 185 0 chr5 108545703 108545865 -43991394 + B2_Mm2 SINE B2 1 192 -3 1 1413 584 282 27 49 chr5 108545865 108545924 -43991335 - ID SINE ID -166 58 2 1 1413 790 270 5 38 chr5 108546012 108546224 -43991035 - B3 SINE B2 -11 205 1 1 1413 867 239 53 5 chr5 108546351 108546557 -43990702 + ID_B1 SINE B4 2 217 -7 1 1413 582 222 34 129 chr5 108546565 108546694 -43990565 + B3 SINE B2 1 105 -111 1 1413 1559 121 0 4 chr5 108546694 108546934 -43990325 - L1_Mus2 LINE L1 0 6566 6328 1 1413 582 222 34 129 chr5 108546934 108547037 -43990222 + B3 SINE B2 106 211 -5 1 1413 300 141 156 0 chr5 108547071 108547135 -43990124 + PB1D9 SINE Alu 40 113 -7 1 1413 1347 72 0 32 chr5 108547206 108547393 -43989866 + B2_Mm2 SINE B2 1 181 -14 1 1413 1120 55 0 20 chr5 108547409 108547557 -43989702 + B1_Mm SINE Alu 2 146 -1 1 1413 497 169 24 0 chr5 108547592 108547675 -43989584 + B1_Mur4 SINE Alu 7 91 -59 1 1413 477 279 7 92 chr5 108547669 108547811 -43989448 + RSINE1 SINE B4 34 163 -2 1 1413 1489 73 0 0 chr5 108548048 108548239 -43989020 + B2_Mm1t SINE B2 2 192 -1 1 1413 379 42 4 19 chr5 108548243 108548303 -43988956 + B2_Mm2 SINE B2 1 61 -155 1 1413 326 309 39 90 chr5 108548303 108548342 -43988917 + B4 SINE B4 1 90 -202 1 1413 412 216 72 0 chr5 108548342 108548443 -43988816 + PB1D9 SINE Alu 2 117 0 1 1413 275 282 87 24 chr5 108548492 108548619 -43988640 + Lx9 LINE L1 7262 7396 -248 1 1413 1131 75 0 14 chr5 108548814 108548962 -43988297 + B1_Mus1 SINE Alu 3 148 0 1 1413 645 279 0 0 chr5 108548972 108549108 -43988151 + B1_Mur2 SINE Alu 1 136 -13 1 1413 333 0 0 0 chr5 108549109 108549146 -43988113 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 1 1413 1165 62 0 0 chr5 108549211 108549357 -43987902 - B1_Mus2 SINE Alu 0 147 2 1 1413 1105 113 95 11 chr5 108549357 108549528 -43987731 - B2_Mm2 SINE B2 -7 188 2 1 1413 529 316 15 40 chr5 108549600 108549801 -43987458 + B4A SINE B4 1 196 -96 1 1413 295 180 0 0 chr5 108549794 108549844 -43987415 - B1_Mus2 SINE Alu -64 83 34 1 1413 290 276 153 0 chr5 108549867 108549965 -43987294 - PB1D7 SINE Alu -4 116 4 1 1413 349 270 125 73 chr5 108550130 108550266 -43986993 - RSINE1 SINE B4 0 165 23 1 1413 1038 16 0 8 chr5 108550360 108550488 -43986771 - B1_Mm SINE Alu 0 147 21 1 1413 315 150 0 0 chr5 108552934 108552994 -43984265 + (T)n Simple_repeat Simple_repeat 1 60 0 1 1413 1278 27 0 0 chr5 108552996 108553143 -43984116 - B1_Mus1 SINE Alu 0 148 2 1 1413 1331 83 10 10 chr5 108554092 108554286 -43982973 - B2_Mm2 SINE B2 0 195 2 1 1413 776 206 0 0 chr5 108554288 108554424 -43982835 - B1_Mur4 SINE Alu -13 137 2 1 1413 180 0 0 0 chr5 108554661 108554681 -43982578 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1413 273 81 0 0 chr5 108555444 108555481 -43981778 + B3A SINE B2 5 41 -157 1 1413 364 234 16 98 chr5 108555459 108555480 -43981779 + MT2B LTR ERVL 145 155 -446 1 1413 864 83 8 16 chr5 108555480 108555603 -43981656 + B1_Mus1 SINE Alu 3 124 -24 1 1413 769 67 0 71 chr5 108555603 108555715 -43981544 - B2_Mm2 SINE B2 -90 105 2 1 1413 389 198 0 55 chr5 108556128 108556219 -43981040 + B1_Mur2 SINE Alu 63 148 -1 1 1413 1219 54 0 0 chr5 108556333 108556480 -43980779 - B1_Mus1 SINE Alu 0 148 2 1 1413 300 154 0 0 chr5 108556490 108556542 -43980717 + (TA)n Simple_repeat Simple_repeat 1 52 0 1 1413 230 247 0 252 chr5 108556837 108556940 -43980319 - ID4_ SINE ID -5 78 2 1 1413 1583 157 130 21 chr5 108557306 108557637 -43979622 + ORR1B2 LTR MaLR 1 367 0 1 1413 1531 58 5 0 chr5 108557753 108557942 -43979317 + B2_Mm1t SINE B2 2 191 -2 1 1413 637 254 61 77 chr5 108558099 108558295 -43978964 - RMER30 DNA MER1_type -8 194 2 1 1413 646 135 0 19 chr5 108558348 108558454 -43978805 + B1_Mur4 SINE Alu 47 150 0 1 1413 426 266 36 9 chr5 108558473 108558583 -43978676 + PB1D9 SINE Alu 1 113 -7 1 1413 244 304 0 107 chr5 108558668 108558771 -43978488 + PB1 SINE Alu 1 92 -35 1 1413 316 312 25 0 chr5 108558927 108559007 -43978252 + B1F1 SINE Alu 3 84 -65 1 1413 556 179 167 25 chr5 108559235 108559355 -43977904 - B1_Mur2 SINE Alu -3 146 10 1 1413 426 286 9 9 chr5 108559414 108559520 -43977739 - PB1D10 SINE Alu -8 109 4 1 1413 423 201 27 95 chr5 108559995 108560143 -43977116 + B1F SINE Alu 5 142 -7 1 1413 450 188 103 10 chr5 108560698 108560795 -43976464 - PB1D9 SINE Alu -13 107 2 1 1413 539 200 56 48 chr5 108563182 108563308 -43973951 - B3 SINE B2 -88 128 2 1 1413 1544 47 0 15 chr5 108563332 108563527 -43973732 - B2_Mm1a SINE B2 -1 192 1 1 1413 527 235 8 17 chr5 108563641 108563758 -43973501 - PB1D9 SINE Alu 0 120 5 1 1413 261 57 0 0 chr5 108563881 108563916 -43973343 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1 1413 1088 60 0 0 chr5 108563916 108564049 -43973210 - B1_Mus2 SINE Alu -13 134 2 1 1413 188 357 18 0 chr5 108564130 108564186 -43973073 + MIR SINE MIR 45 101 -161 1 1413 448 211 194 131 chr5 108565282 108565473 -43971786 - B3 SINE B2 -13 203 1 1 1413 2151 175 34 122 chr5 108565484 108565638 -43971621 - RLTR22_Mur LTR ERVK 0 1848 1732 1 1413 1172 61 0 0 chr5 108565638 108565785 -43971474 - B1_Mus2 SINE Alu 0 147 1 1 1413 2151 175 34 122 chr5 108565785 108566197 -43971062 - RLTR22_Mur LTR ERVK -117 1731 1332 1 1413 1322 172 40 25 chr5 108566196 108566470 -43970789 - RLTR22_Mur LTR ERVK -1570 278 1 1 1413 1475 65 16 0 chr5 108566490 108566676 -43970583 - B2_Mm2 SINE B2 -5 190 2 1 1413 21 0 0 0 chr5 108566761 108566782 -43970477 + AT_rich Low_complexity Low_complexity 1 21 0 1 1413 307 301 87 17 chr5 108566889 108567004 -43970255 + B1_Mus1 SINE Alu 1 123 -25 1 1413 611 296 62 24 chr5 108567004 108567212 -43970047 + ID_B1 SINE B4 3 218 -6 1 1413 570 229 35 21 chr5 108567260 108567403 -43969856 - B1_Mus2 SINE Alu -1 146 2 1 1413 35 83 0 0 chr5 108567451 108567535 -43969724 + AT_rich Low_complexity Low_complexity 1 84 0 1 1413 1241 114 22 0 chr5 108568150 108568334 -43968925 - B2_Mm2 SINE B2 -6 189 2 1 1413 219 125 83 0 chr5 108568555 108568603 -43968656 + A-rich Low_complexity Low_complexity 4 55 0 1 1413 25 31 0 0 chr5 108568867 108568899 -43968360 + AT_rich Low_complexity Low_complexity 1 32 0 1 1413 1233 111 0 27 chr5 108569085 108569270 -43967989 - B2_Mm2 SINE B2 -15 180 1 1 1413 1619 36 0 0 chr5 108569291 108569483 -43967776 - B2_Mm1a SINE B2 0 193 2 1 1413 22 35 0 0 chr5 108569501 108569530 -43967729 + AT_rich Low_complexity Low_complexity 1 29 0 1 1413 263 357 0 0 chr5 108570390 108570460 -43966799 + MER5A DNA MER1_type 20 89 -100 1 1413 231 116 29 14 chr5 108570537 108570551 -43966708 + (TA)n Simple_repeat Simple_repeat 2 15 0 1 1413 207 0 0 0 chr5 108570551 108570574 -43966685 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1413 1133 59 0 0 chr5 108570575 108570711 -43966548 - B1_Mus1 SINE Alu -12 136 1 2 1413 231 116 29 14 chr5 108570711 108570764 -43966495 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1413 656 228 14 20 chr5 108570764 108570912 -43966347 - B1_Mus2 SINE Alu 0 147 1 2 1413 351 296 0 0 chr5 108571288 108571376 -43965883 - Lx8 LINE L1 -217 7256 7169 2 1413 363 252 99 52 chr5 108571404 108571576 -43965683 - Lx7 LINE L1 -651 7045 6866 2 1413 498 152 62 52 chr5 108571583 108571722 -43965537 - RLTR21 LTR ERVK -130 1442 1253 2 1413 279 0 0 0 chr5 108571722 108571753 -43965506 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1413 2130 166 29 42 chr5 108571753 108572230 -43965029 - RLTR21 LTR ERVK -485 1087 617 2 1413 288 0 0 0 chr5 108572231 108572263 -43964996 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2 1413 1252 63 0 0 chr5 108572264 108572422 -43964837 - B2_Mm2 SINE B2 -37 158 1 2 1413 3204 174 46 48 chr5 108572422 108573048 -43964211 - RLTR21 LTR ERVK -941 631 7 2 1413 1682 127 7 18 chr5 108573054 108573334 -43963925 + RMER10B LTR ERVL 1 277 -121 2 1413 993 108 0 0 chr5 108573334 108573473 -43963786 + B2_Mm2 SINE B2 26 164 -31 2 1413 315 122 0 0 chr5 108573465 108573514 -43963745 - RMER10B LTR ERVL -349 49 1 2 1413 1321 256 110 30 chr5 108573557 108574031 -43963228 - Lx8 LINE L1 -700 6773 6262 2 1413 202 235 0 42 chr5 108576078 108576149 -43961110 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 1413 329 297 148 0 chr5 108576353 108576454 -43960805 - PB1 SINE Alu -11 116 1 2 1413 2731 57 0 3 chr5 108576541 108576892 -43960367 - L1Md_F2 LINE L1 -2 6580 6231 2 1413 506 282 49 0 chr5 108576916 108577058 -43960201 - RSINE1 SINE B4 -14 151 3 2 1413 903 223 30 5 chr5 108577181 108577384 -43959875 - B3 SINE B2 -8 208 1 2 1413 411 21 0 0 chr5 108578142 108578190 -43959069 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1413 309 258 56 0 chr5 108578198 108578287 -43958972 - B1F1 SINE Alu -7 142 49 2 1413 262 182 0 29 chr5 108578287 108578355 -43958904 + T-rich Low_complexity Low_complexity 2 67 0 2 1413 952 174 21 16 chr5 108578386 108578579 -43958680 - Lx2 LINE L1 -46 6951 6758 2 1413 752 230 31 6 chr5 108578579 108578741 -43958518 + B3 SINE B2 45 210 -6 2 1413 721 112 17 17 chr5 108578906 108579024 -43958235 - Lx2B LINE L1 -231 6766 6649 2 1413 2774 107 11 29 chr5 108579022 108579473 -43957786 - Lx2B LINE L1 -480 6520 6078 2 1413 249 33 0 0 chr5 108579508 108579538 -43957721 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1413 1187 61 7 0 chr5 108579716 108579863 -43957396 - B1_Mus1 SINE Alu 0 148 1 2 1413 667 117 18 0 chr5 108579938 108580049 -43957210 - BC1_Mm scRNA scRNA -37 115 3 2 1413 351 274 71 16 chr5 108580315 108580430 -43956829 - PB1D10 SINE Alu -5 122 1 2 1413 22 56 0 0 chr5 108580448 108580484 -43956775 + AT_rich Low_complexity Low_complexity 1 36 0 2 1413 908 178 5 46 chr5 108580655 108580849 -43956410 - B2_Mm2 SINE B2 -9 186 1 2 1413 918 228 34 24 chr5 108580868 108581075 -43956184 - B3 SINE B2 -6 210 2 2 1413 217 146 84 12 chr5 108581889 108581972 -43955287 + CT-rich Low_complexity Low_complexity 3 91 0 2 1413 24 0 0 0 chr5 108582028 108582052 -43955207 + AT_rich Low_complexity Low_complexity 1 24 0 2 1413 726 172 29 29 chr5 108582122 108582260 -43954999 + B1_Mur2 SINE Alu 1 138 -11 2 1413 207 0 0 0 chr5 108582262 108582285 -43954974 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 2 1413 1215 61 0 0 chr5 108582472 108582620 -43954639 + B1_Mus1 SINE Alu 1 148 0 2 1413 411 263 42 42 chr5 108582804 108582923 -43954336 - B1_Mur1 SINE Alu -1 148 30 2 1413 202 68 0 64 chr5 108583869 108583902 -43953357 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 2 1413 1239 48 0 0 chr5 108583902 108584049 -43953210 - B1_Mus2 SINE Alu 0 147 1 2 1413 202 68 0 64 chr5 108584049 108584062 -43953197 + (TTTTTG)n Simple_repeat Simple_repeat 2 14 0 2 1413 261 311 98 77 chr5 108584407 108584550 -43952709 + B1_Mus1 SINE Alu 2 147 -1 2 1413 857 275 5 5 chr5 108584425 108584615 -43952644 + B4A SINE B4 101 290 -2 2 1413 1325 77 11 21 chr5 108584948 108585135 -43952124 - B2_Mm1t SINE B2 -7 186 2 2 1413 25 75 0 0 chr5 108585158 108585211 -43952048 + AT_rich Low_complexity Low_complexity 1 53 0 2 1413 557 172 31 62 chr5 108585212 108585342 -43951917 + B1_Mur3 SINE Alu 5 130 -19 2 1413 194 0 0 37 chr5 108585403 108585430 -43951829 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 2 1413 613 252 157 16 chr5 108585495 108585681 -43951578 - B3A SINE B2 -3 192 2 2 1413 249 270 45 45 chr5 108585717 108585783 -43951476 - PB1D7 SINE Alu -53 67 2 2 1413 3322 85 30 0 chr5 108586048 108586520 -43950739 + L1_Mus4 LINE L1 5947 6432 -204 2 1413 361 136 15 15 chr5 108586521 108586588 -43950671 - ORR1A2 LTR MaLR -260 67 1 2 1413 961 196 136 20 chr5 108586633 108586879 -43950380 - ORR1D1 LTR MaLR -76 298 6 2 1413 374 299 8 100 chr5 108586840 108586970 -43950289 - RSINE1 SINE B4 -44 121 4 2 1413 517 130 0 0 chr5 108587024 108587101 -43950158 + B2_Mm2 SINE B2 3 79 -116 2 1413 343 355 32 38 chr5 108588021 108588179 -43949080 + RSINE1 SINE B4 2 158 -7 2 1413 200 173 19 19 chr5 108588478 108588531 -43948728 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1413 542 279 24 104 chr5 108588567 108588779 -43948480 - B3A SINE B2 -1 197 3 2 1413 195 42 0 0 chr5 108588784 108588808 -43948451 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2 1413 2855 61 0 0 chr5 108588811 108589173 -43948086 - L1Md_F2 LINE L1 -19 6563 6202 2 1413 226 157 143 0 chr5 108589181 108589251 -43948008 - L1_Mur3 LINE L1 -2697 3183 3104 2 1413 662 200 14 21 chr5 108589252 108589395 -43947864 - B1_Mus1 SINE Alu -1 147 6 2 1413 236 328 59 17 chr5 108589296 108589414 -43947845 - B4 SINE B4 -98 194 72 2 1413 647 186 121 0 chr5 108589463 108589587 -43947672 - B1_Mus2 SINE Alu -7 140 2 2 1413 377 344 25 0 chr5 108590131 108590253 -43947006 - B1F SINE Alu -21 128 4 2 1413 556 207 40 7 chr5 108590259 108590410 -43946849 - L1M2 LINE L1 -2319 3824 3669 2 1413 908 76 114 0 chr5 108591067 108591199 -43946060 + B1_Mus1 SINE Alu 2 148 0 2 1413 560 298 91 39 chr5 108591261 108591343 -43945916 - L1MB8 LINE L1 -128 6051 5961 2 1413 1499 54 5 0 chr5 108591343 108591529 -43945730 - B2_Mm1t SINE B2 -6 187 1 2 1413 627 289 77 11 chr5 108591529 108591855 -43945404 - L1MB8 LINE L1 -219 5960 5622 2 1413 356 298 116 0 chr5 108591885 108592006 -43945253 - L1MB8 LINE L1 -658 5526 5392 2 1413 1361 80 5 5 chr5 108592817 108593006 -43944253 - B2_Mm2 SINE B2 -6 189 1 2 1413 868 147 18 0 chr5 108593036 108593199 -43944060 + CT-rich Low_complexity Low_complexity 3 168 0 2 1413 346 321 64 21 chr5 108593433 108593573 -43943686 - L1M5 LINE L1 -569 5671 5526 2 1413 712 133 74 0 chr5 108593591 108593726 -43943533 + B1_Mur3 SINE Alu 5 149 0 2 1413 14766 73 31 16 chr5 108593737 108596984 -43940275 - Lx3_Mus LINE L1 -4 7005 3690 2 1413 616 180 36 0 chr5 108597432 108597543 -43939716 + B1_Mur2 SINE Alu 35 149 0 2 1413 252 178 96 0 chr5 108597825 108597898 -43939361 - L1M5 LINE L1 -3138 3008 2929 2 1413 254 294 61 45 chr5 108598028 108598067 -43939192 - MT2B LTR ERVL -275 326 229 2 1413 282 253 12 12 chr5 108598067 108598147 -43939112 - ID_B1 SINE B4 -16 208 129 2 1413 437 111 42 0 chr5 108598076 108598148 -43939111 - B1F2 SINE Alu -28 121 47 2 1413 254 294 61 45 chr5 108598148 108598160 -43939099 - MT2B LTR ERVL -275 228 193 2 1413 307 256 224 0 chr5 108598168 108598290 -43938969 - B3A SINE B2 -38 160 1 2 1413 358 289 55 43 chr5 108598298 108598461 -43938798 - L1MEc LINE L1 -3488 2831 2667 2 1413 332 245 31 0 chr5 108598799 108598897 -43938362 - L1MA4A LINE L1 -386 5917 5817 2 1413 604 279 25 6 chr5 108599019 108599181 -43938078 + RSINE1 SINE B4 1 165 0 2 1413 1537 261 38 65 chr5 108599305 108599648 -43937611 - L1MA4A LINE L1 -1055 5088 4776 2 1413 472 250 0 8 chr5 108599648 108599765 -43937494 - PB1D9 SINE Alu -2 118 3 2 1413 1537 261 38 65 chr5 108599765 108600126 -43937133 - L1MA4A LINE L1 -1368 4775 4403 2 1413 711 291 47 22 chr5 108600110 108600514 -43936745 - L1MA4A LINE L1 -1666 4214 3801 2 1413 347 0 23 0 chr5 108601067 108601110 -43936149 + (TAA)n Simple_repeat Simple_repeat 3 46 0 2 1413 267 200 142 9 chr5 108601378 108601484 -43935775 - L1MEc LINE L1 -4578 1822 1703 2 1413 309 244 0 68 chr5 108601562 108601694 -43935565 - Lx7 LINE L1 -15 7681 7559 2 1413 297 130 0 0 chr5 108601705 108601751 -43935508 - Lx7 LINE L1 -1301 6395 6350 2 1413 379 244 51 13 chr5 108601755 108601834 -43935425 - B3A SINE B2 -113 85 4 2 1413 264 180 33 0 chr5 108602031 108602092 -43935167 - L1ME4a LINE L1 -69 6055 5993 2 1413 459 156 0 0 chr5 108602264 108602294 -43934965 + T-rich Low_complexity Low_complexity 67 96 0 2 1413 328 259 0 12 chr5 108602294 108602376 -43934883 - ID4_ SINE ID 0 83 3 2 1413 459 156 0 0 chr5 108602376 108602441 -43934818 + T-rich Low_complexity Low_complexity 2 66 0 2 1413 1165 68 7 0 chr5 108602441 108602588 -43934671 - B1_Mus1 SINE Alu 0 148 1 2 1413 402 352 56 9 chr5 108602901 108603133 -43934126 - L1M2 LINE L1 -3485 2658 2416 2 1413 621 207 0 8 chr5 108603205 108603322 -43933937 - PB1D9 SINE Alu -4 116 1 2 1413 621 284 8 0 chr5 108603343 108603470 -43933789 - RSINE1 SINE B4 -34 131 4 2 1413 359 226 0 23 chr5 108603733 108603819 -43933440 - MT2B2 LTR ERVL -64 520 437 2 1413 212 79 0 50 chr5 108604140 108604180 -43933079 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 2 1413 500 285 8 30 chr5 108604237 108604371 -43932888 - B1_Mur2 SINE Alu -18 131 1 2 1413 233 241 67 67 chr5 108604376 108604465 -43932794 - BC1_Mm scRNA scRNA -47 105 17 2 1413 503 318 8 8 chr5 108604457 108604584 -43932675 + RSINE1 SINE B4 6 132 -33 2 1413 522 237 0 38 chr5 108604804 108604926 -43932333 + B1_Mur1 SINE Alu 33 149 0 2 1413 243 257 29 0 chr5 108604945 108605015 -43932244 + L1M5 LINE L1 3503 3574 -2572 3 1413 4538 109 44 1 chr5 108605122 108605808 -43931451 - RLTR19B LTR ERVK 0 715 1 3 1413 328 304 98 16 chr5 108605820 108606004 -43931255 + L1M5 LINE L1 5479 5677 -2108 3 1413 303 213 0 0 chr5 108606024 108606085 -43931174 - ID_B1 SINE B4 0 224 164 3 1413 290 284 70 0 chr5 108606085 108606146 -43931113 - B1F SINE Alu 0 149 15 3 1413 978 286 29 0 chr5 108606340 108606578 -43930681 + B4A SINE B4 46 290 -2 3 1413 417 296 20 114 chr5 108606664 108606721 -43930538 + B3A SINE B2 1 56 -142 3 1413 1327 105 16 0 chr5 108606721 108606912 -43930347 + B2_Mm2 SINE B2 1 194 -1 3 1413 417 296 20 114 chr5 108606912 108607056 -43930203 + B3A SINE B2 57 183 -15 3 1413 490 208 0 109 chr5 108607097 108607216 -43930043 + PB1D9 SINE Alu 1 106 -14 3 1413 207 100 0 0 chr5 108607219 108607249 -43930010 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 3 1413 577 282 98 5 chr5 108607354 108607557 -43929702 - MER2 DNA MER2_type -3 342 121 3 1413 368 303 40 10 chr5 108607843 108607943 -43929316 + B4A SINE B4 1 103 -189 3 1413 435 19 0 0 chr5 108608065 108608117 -43929142 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1413 21 0 0 0 chr5 108608139 108608160 -43929099 + AT_rich Low_complexity Low_complexity 1 21 0 3 1413 837 149 89 22 chr5 108608213 108608392 -43928867 + B2_Mm2 SINE B2 2 192 -3 3 1413 220 359 0 0 chr5 108608440 108608504 -43928755 + PB1D7 SINE Alu 35 98 -22 3 1413 505 247 206 6 chr5 108608595 108608770 -43928489 - B3 SINE B2 -2 214 5 3 1413 225 342 0 48 chr5 108608770 108608853 -43928406 + PB1D10 SINE Alu 38 116 -1 3 1413 225 306 32 16 chr5 108608900 108609026 -43928233 + L1M5 LINE L1 5587 5714 -526 3 1413 23 0 0 0 chr5 108609276 108609299 -43927960 + AT_rich Low_complexity Low_complexity 1 23 0 3 1413 1244 27 7 0 chr5 108609652 108609798 -43927461 - B1_Mus1 SINE Alu 0 148 2 3 1413 204 200 0 0 chr5 108609940 108609990 -43927269 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1413 596 286 102 0 chr5 108609991 108610138 -43927121 - RSINE1 SINE B4 -1 164 3 3 1413 21 0 0 0 chr5 108610179 108610200 -43927059 + AT_rich Low_complexity Low_complexity 1 21 0 3 1413 7302 62 9 0 chr5 108610209 108611199 -43926060 - L1Md_F2 LINE L1 -849 5034 4036 3 1413 6006 68 0 19 chr5 108611198 108611445 -43925814 + L1Md_F2 LINE L1 5060 5301 -582 3 1413 1391 80 0 16 chr5 108611445 108611636 -43925623 + B2_Mm2 SINE B2 3 190 -5 3 1413 4092 63 0 26 chr5 108611636 108611929 -43925330 + L1Md_F2 LINE L1 5302 5586 -297 3 1413 7466 66 6 9 chr5 108611929 108612920 -43924339 + L1Md_F2 LINE L1 5587 6574 -8 3 1413 552 280 35 0 chr5 108612946 108613089 -43924170 + B3A SINE B2 4 151 -47 3 1413 24 0 0 0 chr5 108613096 108613120 -43924139 + AT_rich Low_complexity Low_complexity 1 24 0 3 1413 455 198 83 0 chr5 108613226 108613322 -43923937 + Tigger7 DNA MER2_type 506 609 -1882 3 1413 206 0 69 0 chr5 108613565 108613594 -43923665 + (CAGAGA)n Simple_repeat Simple_repeat 2 32 0 3 1413 765 335 47 19 chr5 108613597 108613853 -43923406 - B4A SINE B4 -28 264 2 3 1413 1477 53 0 16 chr5 108614403 108614593 -43922666 - B2_Mm2 SINE B2 -7 188 2 3 1413 532 268 21 14 chr5 108614744 108614884 -43922375 + B1F2 SINE Alu 2 142 -7 3 1413 707 183 219 0 chr5 108615085 108615254 -43922005 - RMER1B Other Other -4 1062 857 3 1413 858 172 0 0 chr5 108615395 108615529 -43921730 - B1_Mur4 SINE Alu -16 134 1 3 1413 239 0 32 0 chr5 108615550 108615581 -43921678 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 3 1413 776 76 244 0 chr5 108615581 108615700 -43921559 - B1_Mus1 SINE Alu 0 148 1 3 1413 2424 28 0 0 chr5 108616317 108616599 -43920660 + L1Md_F2 LINE L1 5305 5586 -297 3 1413 7916 38 23 0 chr5 108616599 108617560 -43919699 + L1Md_F2 LINE L1 5587 6569 -13 3 1413 277 327 103 34 chr5 108617642 108617759 -43919500 - RSINE1 SINE B4 -8 157 33 3 1413 618 200 43 0 chr5 108617759 108617899 -43919360 - B1_Mm SINE Alu 0 147 2 3 1413 853 147 31 0 chr5 108618125 108618285 -43918974 - B2_Mm2 SINE B2 -30 186 1 3 1413 21 89 0 0 chr5 108618295 108618351 -43918908 + AT_rich Low_complexity Low_complexity 1 56 0 3 1413 1639 27 0 0 chr5 108618371 108618559 -43918700 - B2_Mm1t SINE B2 -4 189 2 3 1413 521 291 68 28 chr5 108618582 108618759 -43918500 - ID_B1 SINE B4 -6 218 35 3 1413 1694 185 64 3 chr5 108618762 108619104 -43918155 - ORR1D1 LTR MaLR -11 363 1 3 1413 421 56 56 0 chr5 108619400 108619471 -43917788 + (TTTTG)n Simple_repeat Simple_repeat 1 75 0 3 1413 918 108 58 0 chr5 108619471 108619610 -43917649 - B1_Mus1 SINE Alu 0 148 2 3 1413 286 342 17 50 chr5 108619642 108619670 -43917589 + B4 SINE B4 59 82 -210 3 1413 467 298 21 90 chr5 108619670 108619765 -43917494 + B1F1 SINE Alu 1 94 -55 3 1413 542 88 0 0 chr5 108619765 108619856 -43917403 - L1_Mus3 LINE L1 0 6638 6548 3 1413 467 298 21 90 chr5 108619856 108619904 -43917355 + B1F1 SINE Alu 95 134 -15 3 1413 266 272 124 19 chr5 108619985 108620090 -43917169 + RSINE1 SINE B4 5 120 -45 3 1413 465 281 25 34 chr5 108620126 108620244 -43917015 - PB1D10 SINE Alu 0 117 1 3 1413 22 80 0 0 chr5 108620379 108620429 -43916830 + AT_rich Low_complexity Low_complexity 1 50 0 3 1413 27 73 0 0 chr5 108621070 108621125 -43916134 + AT_rich Low_complexity Low_complexity 1 55 0 3 1413 24 0 0 0 chr5 108621212 108621236 -43916023 + AT_rich Low_complexity Low_complexity 1 24 0 3 1413 265 301 14 14 chr5 108621391 108621465 -43915794 + ID4_ SINE ID 5 78 -5 3 1413 1153 56 0 0 chr5 108621573 108621716 -43915543 - B1_Mus2 SINE Alu -3 144 2 3 1413 23 0 0 0 chr5 108621791 108621814 -43915445 + AT_rich Low_complexity Low_complexity 1 23 0 3 1413 854 172 207 0 chr5 108622014 108622183 -43915076 + B3 SINE B2 3 206 -10 3 1413 23 0 0 0 chr5 108622183 108622206 -43915053 + AT_rich Low_complexity Low_complexity 1 23 0 3 1413 27 0 0 0 chr5 108622448 108622475 -43914784 + AT_rich Low_complexity Low_complexity 1 27 0 3 1413 321 377 9 0 chr5 108622475 108622589 -43914670 - PB1 SINE Alu -7 120 6 3 1413 935 166 0 0 chr5 108623276 108623421 -43913838 - B1_Mus1 SINE Alu -1 147 3 3 1413 255 328 159 60 chr5 108623821 108624003 -43913256 + L2 LINE L2 311 510 -2909 3 1413 201 162 0 0 chr5 108624155 108624192 -43913067 + T-rich Low_complexity Low_complexity 1 37 0 3 1413 868 62 149 30 chr5 108624194 108624328 -43912931 - B1_Mur4 SINE Alu 0 150 1 3 1413 245 289 31 62 chr5 108624485 108624581 -43912678 - PB1D9 SINE Alu -1 119 27 3 1413 515 16 16 0 chr5 108625220 108625284 -43911975 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1413 1611 183 18 172 chr5 108625284 108625638 -43911621 + ORR1C1 LTR MaLR 5 321 -57 3 1413 845 168 243 0 chr5 108625638 108625811 -43911448 - B3 SINE B2 0 216 2 3 1413 1611 183 18 172 chr5 108625811 108625835 -43911424 + ORR1C1 LTR MaLR 322 322 -56 3 1413 1123 95 0 0 chr5 108625835 108625982 -43911277 + B1_Mus1 SINE Alu 2 148 0 3 1413 1611 183 18 172 chr5 108625982 108626044 -43911215 + ORR1C1 LTR MaLR 322 378 0 3 1413 736 267 29 38 chr5 108626131 108626341 -43910918 - ID_B1 SINE B4 0 224 17 3 1413 484 335 148 8 chr5 108626441 108626691 -43910568 - B4A SINE B4 -7 285 1 3 1413 1102 72 0 0 chr5 108627018 108627156 -43910103 + B1_Mus1 SINE Alu 2 139 -9 3 1413 949 95 14 0 chr5 108627156 108627303 -43909956 + (GAA)n Simple_repeat Simple_repeat 2 150 0 3 1413 7336 61 18 9 chr5 108627352 108627937 -43909322 - L1_Mus2 LINE L1 0 6566 5972 3 1413 1139 48 7 0 chr5 108627937 108628083 -43909176 - B1_Mus2 SINE Alu 0 147 1 3 1413 7336 73 10 6 chr5 108628083 108628797 -43908462 - L1_Mus2 LINE L1 -595 5971 5259 3 1413 1673 285 69 11 chr5 108629193 108629815 -43907444 + L1MB5 LINE L1 5476 6133 -41 3 1413 488 59 0 14 chr5 108629944 108630013 -43907246 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1413 249 358 75 0 chr5 108630039 108630159 -43907100 - B4A SINE B4 -13 279 151 3 1413 256 264 92 0 chr5 108630557 108630644 -43906615 - PB1D10 SINE Alu 0 117 23 3 1413 23 33 0 0 chr5 108631201 108631231 -43906028 + AT_rich Low_complexity Low_complexity 1 30 0 3 1413 268 278 68 17 chr5 108631280 108631397 -43905862 - PB1 SINE Alu -4 123 1 3 1413 1456 54 21 0 chr5 108631597 108631783 -43905476 + B2_Mm2 SINE B2 1 190 -5 3 1413 22 70 0 0 chr5 108631852 108631895 -43905364 + AT_rich Low_complexity Low_complexity 1 43 0 3 1413 668 158 9 17 chr5 108632903 108633019 -43904240 + B1_Mur3 SINE Alu 3 117 -32 3 1413 534 31 0 0 chr5 108633096 108633160 -43904099 + (TTCC)n Simple_repeat Simple_repeat 3 66 0 3 1413 1120 56 7 0 chr5 108633185 108633327 -43903932 - B1_Mm SINE Alu 0 147 5 3 1413 1161 75 0 0 chr5 108633537 108633684 -43903575 + B1_Mus1 SINE Alu 1 147 -1 3 1413 4799 51 2 3 chr5 108633704 108634292 -43902967 - LTRIS_Mus LTR ERV1 0 587 1 3 1413 263 244 77 0 chr5 108634411 108634489 -43902770 + L1MA4 LINE L1 5832 5915 -385 3 1413 860 230 78 0 chr5 108634529 108634720 -43902539 + B3 SINE B2 5 210 -6 3 1413 523 233 132 0 chr5 108634992 108635121 -43902138 - B1_Mus2 SINE Alu 0 147 2 3 1413 915 230 59 0 chr5 108635147 108635351 -43901908 - B3 SINE B2 0 216 1 3 1413 23 33 0 0 chr5 108635353 108635383 -43901876 + AT_rich Low_complexity Low_complexity 1 30 0 3 1413 440 295 0 9 chr5 108635397 108635503 -43901756 - PB1D10 SINE Alu -2 115 11 3 1413 4755 50 3 3 chr5 108636217 108636804 -43900455 - LTRIS_Mus LTR ERV1 0 587 1 3 1413 1181 61 0 0 chr5 108637244 108637391 -43899868 + B1_Mus1 SINE Alu 2 148 0 3 1413 36 23 0 0 chr5 108637561 108637604 -43899655 + AT_rich Low_complexity Low_complexity 1 43 0 3 1413 482 149 49 14 chr5 108637863 108638006 -43899253 + (TCTA)n Simple_repeat Simple_repeat 4 151 0 3 1413 622 301 26 26 chr5 108638121 108638312 -43898947 - ID_B1 SINE B4 -2 222 32 3 1413 450 0 0 0 chr5 108638353 108638403 -43898856 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1413 1382 51 17 6 chr5 108638403 108638580 -43898679 - B2_Mm2 SINE B2 -15 180 2 4 1413 269 260 55 0 chr5 108638799 108638872 -43898387 + ID4 SINE ID 4 80 -3 4 1413 27 0 0 0 chr5 108638942 108638969 -43898290 + AT_rich Low_complexity Low_complexity 1 27 0 4 1413 3129 130 18 10 chr5 108639013 108639582 -43897677 - Lx5 LINE L1 -1037 6013 5440 4 1413 1190 48 0 0 chr5 108639582 108639729 -43897530 - B1_Mus2 SINE Alu 0 147 1 4 1413 3129 153 37 27 chr5 108639729 108639881 -43897378 - Lx5 LINE L1 -438 5439 5279 4 1413 225 256 44 0 chr5 108639878 108639968 -43897291 + Lx5 LINE L1 6012 6105 -945 4 1413 870 277 253 18 chr5 108640624 108640951 -43896308 - RLTR16 LTR ERVK -79 426 23 4 1413 21 57 0 0 chr5 108641619 108641654 -43895605 + AT_rich Low_complexity Low_complexity 1 35 0 4 1413 1737 138 32 70 chr5 108641688 108642030 -43895229 + ORR1A4 LTR MaLR 1 329 0 4 1413 300 177 127 0 chr5 108642175 108642233 -43895026 + L1MB3 LINE L1 6088 6154 -29 4 1413 295 355 27 0 chr5 108642233 108642343 -43894916 + PB1D7 SINE Alu 1 113 -7 4 1413 300 177 127 0 chr5 108642343 108642363 -43894896 + L1MB3 LINE L1 6155 6175 -8 4 1413 32 26 0 0 chr5 108642394 108642433 -43894826 + AT_rich Low_complexity Low_complexity 1 39 0 4 1413 231 61 0 0 chr5 108642557 108642590 -43894669 + (TATG)n Simple_repeat Simple_repeat 2 34 0 4 1413 269 303 9 9 chr5 108643200 108643310 -43893949 + RMER21B LTR ERV1 86 195 -647 4 1413 449 230 107 93 chr5 108643327 108643543 -43893716 + RMER21B LTR ERV1 347 565 -277 4 1413 1210 34 0 0 chr5 108643769 108643915 -43893344 - B1_Mm SINE Alu 0 147 2 4 1413 766 276 244 64 chr5 108644069 108644352 -43892907 - Tigger7 DNA MER2_type -2157 334 1 4 1413 547 230 166 106 chr5 108644435 108644585 -43892674 + B3 SINE B2 3 164 -52 4 1413 230 56 28 0 chr5 108644585 108644621 -43892638 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1413 547 230 166 106 chr5 108644621 108644669 -43892590 + B3 SINE B2 165 212 -4 4 1413 1233 41 0 0 chr5 108645294 108645440 -43891819 + B1_Mm SINE Alu 1 146 -1 4 1413 1422 82 0 20 chr5 108645475 108645674 -43891585 - B2_Mm2 SINE B2 0 195 1 4 1413 1353 131 93 35 chr5 108645773 108646085 -43891174 - L1_Mus3 LINE L1 0 6566 6237 4 1413 606 211 16 31 chr5 108646223 108646350 -43890909 - B1_Mur2 SINE Alu -10 139 15 4 1413 714 194 144 37 chr5 108646701 108646888 -43890371 + B3 SINE B2 10 216 0 4 1413 585 298 40 55 chr5 108646899 108647098 -43890161 + B3A SINE B2 3 198 0 4 1413 23 0 0 0 chr5 108647151 108647174 -43890085 + AT_rich Low_complexity Low_complexity 1 23 0 4 1413 275 318 148 0 chr5 108647250 108647338 -43889921 + PB1D10 SINE Alu 1 101 -16 4 1413 25 0 0 0 chr5 108647359 108647384 -43889875 + AT_rich Low_complexity Low_complexity 1 25 0 4 1413 434 202 61 0 chr5 108647489 108647588 -43889671 - B3 SINE B2 0 216 112 4 1413 355 145 32 0 chr5 108647616 108647678 -43889581 + B1_Mur3 SINE Alu 77 140 -9 4 1413 387 60 0 0 chr5 108647678 108647728 -43889531 + (CAAT)n Simple_repeat Simple_repeat 2 51 0 4 1413 342 229 171 9 chr5 108647745 108647879 -43889380 + ORR1C1 LTR MaLR 18 206 -172 4 1413 1829 162 27 3 chr5 108647879 108648207 -43889052 + L1_Mur2 LINE L1 5482 5817 -60 4 1413 339 300 0 0 chr5 108648196 108648276 -43888983 - RMER1C Other Other -183 1159 1080 4 1413 783 296 50 55 chr5 108648299 108648756 -43888503 - RMER1B Other Other -460 882 158 4 1413 248 292 82 10 chr5 108648957 108649054 -43888205 - RMER1B Other Other -913 153 50 4 1413 318 106 0 0 chr5 108649172 108649219 -43888040 + (TTCTC)n Simple_repeat Simple_repeat 4 50 0 4 1413 720 236 7 7 chr5 108649296 108649445 -43887814 - B1_Mur2 SINE Alu 0 149 1 4 1413 37 39 0 0 chr5 108650065 108650116 -43887143 + AT_rich Low_complexity Low_complexity 1 51 0 4 1413 5815 190 23 50 chr5 108650685 108652664 -43884595 - Lx5 LINE L1 -470 6588 4693 4 1413 1568 21 5 35 chr5 108652692 108652889 -43884370 + B2_Mm1a SINE B2 3 193 0 4 1413 1574 252 0 38 chr5 108652890 108653232 -43884027 + Lx5 LINE L1 6551 6879 -171 4 1413 1198 96 68 0 chr5 108653234 108653411 -43883848 + B2_Mm2 SINE B2 3 191 -4 4 1413 180 0 0 0 chr5 108653433 108653453 -43883806 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1413 285 28 0 0 chr5 108653588 108653611 -43883648 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1413 315 0 0 0 chr5 108653611 108653646 -43883613 + (CACAT)n Simple_repeat Simple_repeat 1 35 0 4 1413 285 28 0 0 chr5 108653646 108653658 -43883601 + (CA)n Simple_repeat Simple_repeat 1 12 0 4 1413 773 273 24 19 chr5 108653824 108654037 -43883222 - B3 SINE B2 0 216 3 4 1413 681 275 54 0 chr5 108654286 108654435 -43882824 + ID_B1 SINE B4 8 164 -60 4 1413 232 448 0 0 chr5 108654492 108654588 -43882671 + PB1D10 SINE Alu 1 96 -21 4 1413 1570 47 0 10 chr5 108654708 108654902 -43882357 - B2_Mm1a SINE B2 0 193 2 4 1413 1409 227 109 9 chr5 108654942 108655280 -43881979 + ORR1D1 LTR MaLR 3 374 0 4 1413 4923 188 145 30 chr5 108655280 108656507 -43880752 + ORR1D1-int LTR MaLR 1 1368 -2 4 1413 1815 196 19 21 chr5 108656509 108656884 -43880375 + ORR1D1 LTR MaLR 1 374 0 4 1413 250 119 24 0 chr5 108657198 108657240 -43880019 + Lx3C LINE L1 6932 6974 -2 4 1413 1077 67 0 0 chr5 108657263 108657398 -43879861 + B1_Mus2 SINE Alu 1 135 -12 4 1413 501 84 0 0 chr5 108657399 108657470 -43879789 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 4 1413 246 339 0 0 chr5 108658100 108658156 -43879103 + PB1D10 SINE Alu 13 68 -49 4 1413 2828 85 19 27 chr5 108658328 108658529 -43878730 - MTB_Mm LTR MaLR 0 407 211 4 176 3368 35 2 0 chr5 108658529 108658924 -43878335 + MTA_Mm LTR MaLR 1 396 0 4 1414 2828 85 19 27 chr5 108658924 108659132 -43878127 - MTB_Mm LTR MaLR -197 210 1 4 1414 312 272 37 0 chr5 108659172 108659253 -43878006 - L2 LINE L2 -1073 2346 2263 4 1414 346 384 93 51 chr5 108659305 108659519 -43877740 + ID_B1 SINE B4 2 224 0 4 1414 200 128 0 25 chr5 108659520 108659560 -43877699 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1414 314 224 29 15 chr5 108659575 108659643 -43877616 + PB1D9 SINE Alu 47 115 -5 4 1414 217 330 102 78 chr5 108659969 108660330 -43876929 - L2 LINE L2 -1605 1814 1445 4 1414 240 327 0 0 chr5 108660414 108660469 -43876790 - PB1D9 SINE Alu -64 56 2 4 1414 350 276 18 71 chr5 108660475 108660588 -43876671 + MT2B LTR ERVL 152 258 -343 4 1414 745 171 23 15 chr5 108660502 108660633 -43876626 + B1_Mur4 SINE Alu 18 149 -1 4 1414 221 307 0 0 chr5 108660879 108660923 -43876336 + A-rich Low_complexity Low_complexity 1 44 0 4 1414 1184 54 0 0 chr5 108660923 108661070 -43876189 + B1_Mus2 SINE Alu 1 147 0 4 1414 221 307 0 0 chr5 108661070 108661100 -43876159 + A-rich Low_complexity Low_complexity 45 74 0 4 1414 403 237 66 80 chr5 108661323 108661474 -43875785 - B3A SINE B2 0 198 50 4 1414 45 0 0 0 chr5 108661855 108661900 -43875359 + AT_rich Low_complexity Low_complexity 1 45 0 4 1414 317 314 0 19 chr5 108662138 108662245 -43875014 - MIR SINE MIR -10 252 148 4 1414 421 209 70 0 chr5 108662381 108662467 -43874792 - B3 SINE B2 -123 93 2 4 1414 281 263 58 58 chr5 108662510 108662700 -43874559 + L1MEg LINE L1 1812 2001 -5101 4 1414 659 191 83 8 chr5 108663008 108663140 -43874119 - B1_Mur1 SINE Alu -6 143 2 4 1414 321 47 0 0 chr5 108663154 108663197 -43874062 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 4 1414 974 60 75 8 chr5 108663197 108663331 -43873928 - B1_Mus2 SINE Alu -3 144 2 4 1414 230 184 20 0 chr5 108663388 108663437 -43873822 + L1MEg LINE L1 3589 3638 -3696 4 1414 198 0 0 0 chr5 108663547 108663569 -43873690 + (GAAA)n Simple_repeat Simple_repeat 4 25 0 4 1414 24 53 0 0 chr5 108663609 108663647 -43873612 + AT_rich Low_complexity Low_complexity 1 38 0 4 1414 4037 84 9 3 chr5 108663741 108664323 -43872936 + L1_Mm LINE L1 3460 4044 -1839 4 1414 799 281 13 69 chr5 108664358 108664591 -43872668 + MLT1A0 LTR MaLR 146 365 0 4 1414 339 213 0 0 chr5 108665224 108665299 -43871960 + CT-rich Low_complexity Low_complexity 3 77 0 4 1414 536 135 83 75 chr5 108665312 108665432 -43871827 - B1_Mus1 SINE Alu -7 141 21 4 1414 216 77 19 37 chr5 108665463 108665517 -43871742 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 4 1414 1635 201 64 3 chr5 108665904 108666249 -43871010 + ORR1D2 LTR MaLR 3 368 -2 4 1414 1178 55 0 7 chr5 108666249 108666397 -43870862 + B1_Mus2 SINE Alu 1 147 0 4 1414 1128 94 0 117 chr5 108666473 108666678 -43870581 + B2_Mm2 SINE B2 1 181 -14 4 1414 26 30 0 0 chr5 108666678 108666711 -43870548 + AT_rich Low_complexity Low_complexity 1 33 0 4 1414 547 277 114 57 chr5 108667228 108667404 -43869855 - B3 SINE B2 -27 189 4 4 1414 1469 174 71 166 chr5 108667486 108667921 -43869338 - ORR1B1 LTR MaLR 0 394 1 4 1414 222 270 0 0 chr5 108668159 108668233 -43869026 + (TATG)n Simple_repeat Simple_repeat 3 76 0 4 1414 406 56 0 0 chr5 108668379 108668433 -43868826 + B1_Mm SINE Alu 94 147 0 4 1414 913 245 66 121 chr5 108668626 108669042 -43868217 - MTE2a LTR MaLR -36 383 6 4 1414 1604 37 0 0 chr5 108669311 108669499 -43867760 + B2_Mm1a SINE B2 1 188 -5 4 1414 501 253 0 0 chr5 108669644 108669753 -43867506 + B1F SINE Alu 5 113 -7 4 1414 304 200 0 151 chr5 108669658 108669764 -43867495 + MT2B2 LTR ERVL 183 272 -312 4 1414 503 244 13 118 chr5 108669784 108669937 -43867322 + ID_B1 SINE B4 81 217 -7 4 1414 326 214 71 12 chr5 108670059 108670144 -43867115 - L1M2 LINE L1 -3309 2834 2745 4 1414 29 60 0 0 chr5 108670243 108670293 -43866966 + AT_rich Low_complexity Low_complexity 1 50 0 4 1414 208 341 137 16 chr5 108670857 108671039 -43866220 + L2 LINE L2 1398 1601 -1818 4 1414 1909 157 9 3 chr5 108671115 108671442 -43865817 - RMER6D LTR ERVK -4 716 388 4 1414 554 143 0 2 chr5 108671442 108671547 -43865712 + L1_Mm LINE L1 5360 5464 -422 4 1414 195 42 0 0 chr5 108672237 108672261 -43864998 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1414 289 226 24 12 chr5 108674291 108674376 -43862883 - MurERV4_19-int LTR ERVK -1993 5260 5175 4 1414 1145 96 11 73 chr5 108674638 108674829 -43862430 + B2_Mm1t SINE B2 1 179 -14 5 1414 358 106 348 19 chr5 108674876 108674978 -43862281 + B2_Mm2 SINE B2 47 185 -10 5 1414 8827 101 48 1 chr5 108675823 108676043 -43861216 - MurERV4_19-int LTR ERVK -1178 4602 4359 4 1414 183 80 0 0 chr5 108676043 108676068 -43861191 + (TTA)n Simple_repeat Simple_repeat 1 25 0 5 1414 8827 101 48 1 chr5 108676068 108677249 -43860010 - MurERV4_19-int LTR ERVK -1422 4358 3137 4 1414 6757 75 28 15 chr5 108677277 108678688 -43858571 - L1_Mus2 LINE L1 0 6566 5135 5 1414 3769 113 25 0 chr5 108678688 108679288 -43857971 - MurERV4_19-int LTR ERVK -2640 3140 2526 4 1414 6436 155 43 10 chr5 108679280 108680822 -43856437 - MurERV4_19-int LTR ERVK -4186 1594 1 4 1414 1377 219 34 104 chr5 108680822 108681178 -43856081 - RMER19C LTR ERVK 0 611 281 4 1414 232 91 0 0 chr5 108681175 108681208 -43856051 - RLTR19B LTR ERVK -651 64 32 5 1414 354 197 0 0 chr5 108681249 108681315 -43855944 - RLTR19-int LTR ERVK -1 6136 6071 5 1414 2014 180 121 13 chr5 108681730 108682202 -43855057 - MERVL_2A-int LTR ERVL -5196 565 43 5 1414 328 74 0 0 chr5 108682235 108682289 -43854970 - MT2A LTR ERVL -2 531 478 5 1414 816 196 0 26 chr5 108682302 108682454 -43854805 - B1_Mus1 SINE Alu 0 148 1 5 1414 280 147 65 14 chr5 108682465 108682603 -43854656 + (TA)n Simple_repeat Simple_repeat 2 146 0 5 1414 1066 207 86 121 chr5 108682626 108682939 -43854320 - MT2A LTR ERVL -231 302 1 5 1414 288 200 36 0 chr5 108682939 108682993 -43854266 - RMER15 LTR ERVL -519 56 1 5 1414 288 333 157 0 chr5 108682996 108683098 -43854161 - MER70B LTR ERVL -285 293 176 5 1414 341 312 86 0 chr5 108683204 108683297 -43853962 - MER70B LTR ERVL -388 190 90 5 1414 1232 48 0 0 chr5 108683519 108683666 -43853593 + B1_Mm SINE Alu 1 147 0 5 1414 471 78 0 0 chr5 108683749 108683813 -43853446 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1414 189 0 0 0 chr5 108683923 108683944 -43853315 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1414 508 228 10 0 chr5 108683998 108684099 -43853160 + PB1D9 SINE Alu 2 103 -17 5 1414 270 0 0 0 chr5 108684104 108684134 -43853125 + (CAAT)n Simple_repeat Simple_repeat 1 30 0 5 1414 2869 147 56 32 chr5 108684653 108685333 -43851926 + L1_Mur3 LINE L1 2641 3336 -2544 5 1414 430 209 58 0 chr5 108685344 108685430 -43851829 + B1_Mur2 SINE Alu 57 147 -2 5 1414 1182 124 11 0 chr5 108685625 108685802 -43851457 + B2_Mm1t SINE B2 1 179 -14 5 1414 432 145 329 27 chr5 108685802 108685951 -43851308 + B2_Mm2 SINE B2 2 195 0 5 1414 587 167 111 0 chr5 108686005 108686113 -43851146 + B1_Mur4 SINE Alu 26 145 -5 5 1414 268 333 53 45 chr5 108686006 108686138 -43851121 + B4 SINE B4 111 243 -49 5 1414 468 338 69 12 chr5 108686213 108686380 -43850879 - ID_B1 SINE B4 -53 239 67 5 1414 502 265 8 41 chr5 108686481 108686603 -43850656 + ID_B1 SINE B4 105 222 -2 5 1414 769 191 130 11 chr5 108686608 108686793 -43850466 + B3 SINE B2 1 207 -9 5 1414 501 209 80 22 chr5 108687250 108687387 -43849872 - Lx6 LINE L1 -75 7385 7241 5 1414 849 231 187 11 chr5 108687413 108687680 -43849579 - Lx6 LINE L1 -176 7284 6971 5 1414 1861 164 149 63 chr5 108687708 108688171 -43849088 - RMER5 LTR ERV1 -14 520 18 5 1414 942 136 13 13 chr5 108688191 108688340 -43848919 - B1_Mur4 SINE Alu 0 150 2 5 1414 6858 77 54 27 chr5 108688353 108689360 -43847899 - Lx3_Mus LINE L1 0 7009 5976 5 1414 28 0 0 0 chr5 108689492 108689520 -43847739 + AT_rich Low_complexity Low_complexity 1 28 0 5 1414 4013 77 4 0 chr5 108689549 108690071 -43847188 + L1_Mus1 LINE L1 6044 6567 0 5 1414 558 209 9 9 chr5 108690110 108690226 -43847033 + PB1D10 SINE Alu 1 116 -1 5 1414 386 345 26 40 chr5 108690381 108690532 -43846727 + B1F SINE Alu 1 149 0 5 1414 279 270 32 0 chr5 108690922 108690985 -43846274 + MLT1H LTR MaLR 331 395 -154 5 1414 309 189 108 0 chr5 108691175 108691241 -43846018 - B1F SINE Alu 0 149 77 5 1414 323 61 0 39 chr5 108691241 108691292 -43845967 + (TTA)n Simple_repeat Simple_repeat 2 50 0 5 1414 510 214 8 8 chr5 108691324 108691442 -43845817 - Lx7 LINE L1 -16 7680 7563 5 1414 2539 82 5 48 chr5 108691446 108691843 -43845416 + L1VL4 LINE L1 199 578 -5724 5 1414 714 173 211 71 chr5 108692171 108692450 -43844809 - RMER17C-int LTR ERVK -2919 319 2 5 1414 1381 154 131 23 chr5 108692462 108692814 -43844445 - RMER17C LTR ERVK -19 391 2 5 1414 2060 47 0 0 chr5 108692815 108693072 -43844187 - Lx3C LINE L1 -1095 5881 5625 5 1414 6517 88 31 7 chr5 108693072 108693881 -43843378 + L1_Mur1 LINE L1 4451 5272 -614 5 1414 260 27 27 0 chr5 108693881 108693918 -43843341 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5 1414 6517 88 31 7 chr5 108693918 108694123 -43843136 + L1_Mur1 LINE L1 5273 5488 -398 5 1414 3836 187 60 9 chr5 108694121 108694925 -43842334 - Lx7 LINE L1 -510 7186 6342 5 1414 222 37 0 0 chr5 108695104 108695131 -43842128 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1414 402 94 0 0 chr5 108695145 108695209 -43842050 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1414 347 289 144 0 chr5 108695213 108695310 -43841949 - RSINE1 SINE B4 -17 148 38 5 1414 318 301 21 121 chr5 108695549 108695704 -43841555 - B1F SINE Alu -6 143 3 5 1414 791 174 20 53 chr5 108695738 108695890 -43841369 - B1_Mur3 SINE Alu -1 148 2 5 1414 252 352 26 70 chr5 108696091 108696247 -43841012 - B1F1 SINE Alu 0 149 1 5 1414 826 131 31 0 chr5 108696442 108696572 -43840687 + B1_Mur4 SINE Alu 10 143 -7 5 1414 252 0 0 0 chr5 108696575 108696603 -43840656 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 5 1414 423 151 306 45 chr5 108697184 108697295 -43839964 - B1_Mur4 SINE Alu -10 140 1 5 1414 219 224 20 0 chr5 108699574 108699623 -43837636 - ID4_ SINE ID -8 75 26 5 1414 319 337 0 10 chr5 108700344 108700443 -43836816 - PB1D10 SINE Alu -15 102 5 5 1414 230 312 0 0 chr5 108700480 108700528 -43836731 - ID4_ SINE ID -33 50 3 5 1414 1175 62 7 0 chr5 108700561 108700707 -43836552 + B1_Mus2 SINE Alu 1 147 0 5 1414 633 161 189 24 chr5 108701385 108701512 -43835747 - B1_Mus1 SINE Alu 0 148 1 5 1414 327 238 136 71 chr5 108701551 108701571 -43835688 - B1_Mur3 SINE Alu 0 149 121 5 1414 1157 68 7 0 chr5 108701571 108701717 -43835542 - B1_Mus1 SINE Alu 0 148 2 5 1414 345 257 67 50 chr5 108701717 108701836 -43835423 - B1_Mm SINE Alu -26 121 1 5 1414 1424 138 8 12 chr5 108702885 108703127 -43834132 - RLTR11B LTR ERVK 0 453 213 5 1414 1824 188 49 18 chr5 108703321 108703812 -43833447 + MYSERV-int LTR ERVK 6037 6488 -62 5 1414 1726 142 65 0 chr5 108703815 108704138 -43833121 + RLTR15 LTR ERVK 3 346 -13 5 1414 465 236 200 0 chr5 108704198 108704338 -43832921 + B3A SINE B2 1 168 -30 5 1414 239 287 208 26 chr5 108705231 108705385 -43831874 + B3A SINE B2 2 183 -15 5 1414 321 279 0 0 chr5 108705425 108705511 -43831748 - MIR SINE MIR -8 254 169 5 1414 1193 54 0 0 chr5 108705520 108705667 -43831592 + B1_Mm SINE Alu 1 147 0 5 1414 1113 43 0 0 chr5 108705696 108705835 -43831424 + B2_Mm2 SINE B2 1 139 -56 5 1414 407 176 141 0 chr5 108705891 108705976 -43831283 - Tigger7 DNA MER2_type -2394 97 1 5 1414 242 235 346 0 chr5 108706124 108706144 -43831115 - B1F2 SINE Alu -9 111 3 5 1414 230 237 16 33 chr5 108706144 108706205 -43831054 - B4 SINE B4 -145 147 88 5 1414 470 279 182 23 chr5 108706284 108706548 -43830711 + LTR50 LTR ERVL 401 706 -89 5 1414 716 186 64 0 chr5 108706985 108707125 -43830134 - B1_Mur4 SINE Alu -1 149 1 5 1414 339 264 16 98 chr5 108707018 108707140 -43830119 - MT2B LTR ERVL -337 264 153 5 1414 858 223 30 15 chr5 108707157 108707357 -43829902 - B3 SINE B2 -11 205 3 5 1414 276 30 0 0 chr5 108709914 108709947 -43827312 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5 1414 255 308 50 25 chr5 108709974 108710054 -43827205 - B1F1 SINE Alu -61 88 7 5 1414 758 269 58 19 chr5 108710192 108710397 -43826862 - B3 SINE B2 0 216 4 5 1414 416 267 0 24 chr5 108710410 108710533 -43826726 - PB1D9 SINE Alu 0 120 1 5 1414 279 330 53 0 chr5 108710579 108710673 -43826586 - MLT1D LTR MaLR -69 436 338 5 1414 459 244 85 16 chr5 108710797 108710926 -43826333 - MLT1D LTR MaLR -365 140 3 5 1414 462 217 211 5 chr5 108710932 108711131 -43826128 - L1ME3B LINE L1 -382 5858 5619 5 1414 713 216 78 7 chr5 108711354 108711508 -43825751 + B3 SINE B2 2 166 -50 5 1414 385 258 43 33 chr5 108711497 108711589 -43825670 + RSINE1 SINE B4 43 135 -30 5 1414 460 213 45 90 chr5 108711587 108711721 -43825538 + MT2B LTR ERVL 137 264 -337 5 1414 1034 53 8 0 chr5 108711623 108711756 -43825503 + B1_Mus2 SINE Alu 14 147 0 5 1414 26 0 0 0 chr5 108711756 108711782 -43825477 + AT_rich Low_complexity Low_complexity 1 26 0 5 1414 278 220 34 0 chr5 108712072 108712131 -43825128 - RLTR13B1 LTR ERVK -832 61 1 5 1414 2074 50 0 0 chr5 108712254 108712516 -43824743 - L1Md_A LINE L1 0 6582 6321 5 1414 3761 138 56 70 chr5 108712544 108713103 -43824156 - RMER6A LTR ERVK 0 756 168 5 1414 3583 26 33 2 chr5 108713103 108713526 -43823733 - RLTR10C LTR ERVK 0 436 1 5 1414 3761 138 56 70 chr5 108713526 108713733 -43823526 - RMER6A LTR ERVK -589 167 1 5 1414 900 74 0 0 chr5 108713822 108713943 -43823316 + (TTTC)n Simple_repeat Simple_repeat 2 122 0 5 1414 254 296 90 60 chr5 108713943 108714076 -43823183 - MER20 DNA MER1_type -54 165 29 5 1414 214 346 19 0 chr5 108714095 108714147 -43823112 - B1F2 SINE Alu -96 53 1 5 1414 501 276 108 36 chr5 108714176 108714315 -43822944 + B1F SINE Alu 1 149 0 5 1414 1464 142 19 71 chr5 108714490 108714800 -43822459 - RLTRETN_Mm LTR ERVK 0 322 29 5 1414 4205 240 66 39 chr5 108714843 108715670 -43821589 - MYSERV6-int LTR ERVK -6864 2095 1227 5 1414 1156 51 0 0 chr5 108715670 108715808 -43821451 + B1_Mus2 SINE Alu 1 138 -9 5 1414 206 32 0 31 chr5 108715808 108715840 -43821419 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 5 1414 4205 240 66 39 chr5 108715840 108716355 -43820904 - MYSERV6-int LTR ERVK -7733 1226 716 5 1414 674 206 226 6 chr5 108716460 108716641 -43820618 + RMER21B LTR ERV1 347 567 -275 5 1414 25 0 0 0 chr5 108717138 108717163 -43820096 + AT_rich Low_complexity Low_complexity 1 25 0 5 1414 1163 55 7 0 chr5 108717164 108717310 -43819949 - B1_Mus1 SINE Alu 0 148 2 6 1414 818 88 3 4 chr5 108717639 108717760 -43819499 + B1_Mm SINE Alu 1 147 0 6 1414 2268 52 0 10 chr5 108717799 108718091 -43819168 - L1Md_F2 LINE L1 0 6582 6294 6 1414 369 337 63 32 chr5 108718461 108718651 -43818608 + L1M4 LINE L1 2568 2763 -3383 6 1414 353 257 70 5 chr5 108718709 108718827 -43818432 + B1_Mur1 SINE Alu 2 135 -14 6 1414 830 228 28 46 chr5 108718879 108719095 -43818164 + MTEa LTR MaLR 168 379 0 6 1414 517 258 30 12 chr5 108719734 108720207 -43817052 - MMSAT4 Satellite Satellite -76 481 1 6 1414 594 128 294 0 chr5 108721270 108721379 -43815880 + B1_Mur4 SINE Alu 1 141 -9 6 1414 1164 41 14 0 chr5 108721630 108721776 -43815483 + B1_Mus1 SINE Alu 1 148 0 6 1414 270 152 0 0 chr5 108721776 108721835 -43815424 + A-rich Low_complexity Low_complexity 1 59 0 6 1414 257 224 0 0 chr5 108722400 108722458 -43814801 + ORR1C1 LTR MaLR 180 237 -141 6 1414 807 198 11 50 chr5 108722718 108722899 -43814360 - ORR1D1 LTR MaLR -200 174 1 6 1414 2177 134 60 15 chr5 108722944 108723346 -43813913 - RMER6B LTR ERVK -7 454 35 6 1414 38804 40 0 3 chr5 108723351 108729570 -43807689 - L1Md_T LINE L1 0 6585 285 6 1414 262 191 0 0 chr5 108729574 108729621 -43807638 - RMER6B LTR ERVK -414 47 1 6 1414 1011 58 0 0 chr5 108729883 108730020 -43807239 + B1_Mus2 SINE Alu 11 147 0 6 1414 659 234 6 0 chr5 108730020 108730191 -43807068 + GA-rich Low_complexity Low_complexity 2 173 0 6 1414 766 172 15 15 chr5 108730229 108730365 -43806894 - B1_Mur4 SINE Alu -13 137 2 6 1414 540 237 57 19 chr5 108730555 108730714 -43806545 - L1_Mur3 LINE L1 -1730 4150 3986 6 1414 1117 213 270 32 chr5 108730723 108730958 -43806301 - RLTR21 LTR ERVK 0 1572 1305 6 1414 249 33 0 0 chr5 108730958 108730988 -43806271 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1414 1117 213 270 32 chr5 108730988 108731025 -43806234 - RLTR21 LTR ERVK -268 1304 1255 6 1414 182 83 0 53 chr5 108731025 108731063 -43806196 + (CATA)n Simple_repeat Simple_repeat 1 36 0 6 1414 1117 213 270 32 chr5 108731063 108731197 -43806062 - RLTR21 LTR ERVK -318 1254 1070 6 1414 360 156 13 0 chr5 108731171 108731248 -43806011 - RLTR21 LTR ERVK -610 962 885 6 1414 297 0 0 0 chr5 108731262 108731295 -43805964 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1414 812 36 18 0 chr5 108731348 108731459 -43805800 + B1_Mus1 SINE Alu 35 147 -1 6 1414 762 170 12 12 chr5 108731460 108731627 -43805632 + GA-rich Low_complexity Low_complexity 4 170 0 6 1414 3338 150 41 7 chr5 108731632 108732215 -43805044 - RLTR21 LTR ERVK -969 603 1 6 1414 1077 220 15 30 chr5 108732215 108732477 -43804782 - L1_Mur3 LINE L1 -1889 3991 3734 6 1414 661 242 127 34 chr5 108732962 108733136 -43804123 - L1_Mur3 LINE L1 -2146 3734 3558 6 1414 6692 140 15 54 chr5 108733136 108734372 -43802887 - Lx2 LINE L1 -1 6996 5809 6 1414 661 242 127 34 chr5 108734372 108734438 -43802821 - L1_Mur3 LINE L1 -2323 3557 3471 6 1414 423 0 0 0 chr5 108734438 108734485 -43802774 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1414 661 242 127 34 chr5 108734485 108734534 -43802725 - L1_Mur3 LINE L1 -2410 3470 3418 6 1414 433 198 18 0 chr5 108734802 108734913 -43802346 + (TA)n Simple_repeat Simple_repeat 1 113 0 6 1414 351 0 0 0 chr5 108734913 108734952 -43802307 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1414 279 250 0 84 chr5 108735028 108735111 -43802148 - RMER5 LTR ERV1 -50 484 409 6 1414 306 216 50 75 chr5 108735135 108735255 -43802004 - RMER4B LTR ERVK -16 569 453 6 1414 2523 153 6 32 chr5 108735284 108735750 -43801509 + RMER6B LTR ERVK 1 454 -7 6 1414 3018 35 0 49 chr5 108735750 108736138 -43801121 + L1Md_F2 LINE L1 6200 6568 -14 6 1414 21 36 0 0 chr5 108736138 108736166 -43801093 + AT_rich Low_complexity Low_complexity 1 28 0 6 1414 285 217 90 60 chr5 108736222 108736389 -43800870 - RMER19C LTR ERVK -143 468 297 6 1414 645 187 216 5 chr5 108736380 108736584 -43800675 - RMER4B LTR ERVK -338 247 1 6 1414 576 216 117 7 chr5 108736706 108736860 -43800399 - MTD LTR MaLR -15 404 234 6 1414 374 267 112 34 chr5 108736899 108737077 -43800182 - RMER5 LTR ERV1 -254 280 89 6 1414 1509 229 74 8 chr5 108737077 108737429 -43799830 + MTD LTR MaLR 14 388 -31 6 1414 1887 153 23 23 chr5 108737435 108737789 -43799470 + ORR1B1 LTR MaLR 41 394 0 6 1414 236 86 0 0 chr5 108737789 108737824 -43799435 + MTD LTR MaLR 383 417 -2 6 1414 2362 215 47 45 chr5 108737827 108738471 -43798788 + MTD-int LTR MaLR 3 647 -611 6 1414 792 193 21 0 chr5 108738474 108738614 -43798645 + B1_Mur4 SINE Alu 1 143 -7 6 1414 371 340 64 31 chr5 108738762 108739071 -43798188 + RMER20B LTR ERVK 169 471 -171 6 1414 363 98 0 0 chr5 108739237 108739298 -43797961 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1414 450 0 0 0 chr5 108739298 108739347 -43797912 + (GA)n Simple_repeat Simple_repeat 2 51 0 6 1414 848 227 202 20 chr5 108739349 108739617 -43797642 + MTD-int LTR MaLR 797 1106 -152 6 1414 1096 89 148 0 chr5 108739617 108739786 -43797473 + B2_Mm2 SINE B2 1 194 -1 6 1414 848 227 202 20 chr5 108739786 108739908 -43797351 + MTD-int LTR MaLR 1107 1258 0 6 1414 244 28 0 100 chr5 108739940 108739980 -43797279 + MTD LTR MaLR 20 55 -366 6 1414 739 54 45 9 chr5 108739976 108740088 -43797171 + ORR1C1 LTR MaLR 263 378 0 6 1414 485 149 21 11 chr5 108740088 108740179 -43797080 + MTD LTR MaLR 320 411 -8 6 1414 350 261 43 37 chr5 108740368 108740555 -43796704 - L1M4 LINE L1 -3536 2610 2423 6 1414 272 85 356 0 chr5 108740705 108740764 -43796495 - B1_Mur4 SINE Alu -13 137 58 6 1414 533 251 75 71 chr5 108740769 108741035 -43796224 + L1M3 LINE L1 4889 5155 -985 6 1414 1307 82 49 0 chr5 108743717 108743900 -43793359 + B2_Mm2 SINE B2 1 192 -3 6 1414 737 222 168 0 chr5 108744238 108744423 -43792836 - B3 SINE B2 0 216 1 6 1414 957 131 0 0 chr5 108744429 108744582 -43792677 + (TTTTC)n Simple_repeat Simple_repeat 3 155 0 6 1414 1210 111 0 22 chr5 108744585 108744769 -43792490 - B2_Mm2 SINE B2 -15 180 1 6 1414 237 354 0 0 chr5 108745404 108745483 -43791776 + ID4 SINE ID 3 81 -2 6 1414 228 216 0 0 chr5 108746547 108746598 -43790661 + CT-rich Low_complexity Low_complexity 5 55 0 6 1414 353 333 8 0 chr5 108746600 108746729 -43790530 - ID_B1 SINE B4 -16 208 79 6 1414 589 256 38 25 chr5 108749243 108749403 -43787856 + RSINE1 SINE B4 4 165 0 6 1414 672 147 17 0 chr5 108749404 108749520 -43787739 - B1_Mur4 SINE Alu -32 118 1 6 1414 1149 82 0 0 chr5 108749546 108749693 -43787566 - B1_Mus1 SINE Alu 0 148 2 6 1414 786 131 78 21 chr5 108750382 108750523 -43786736 - B1_Mur3 SINE Alu 0 149 1 6 1414 2659 231 146 34 chr5 108750546 108751437 -43785822 - Lx9 LINE L1 -8 7636 6645 6 1414 342 259 39 65 chr5 108751630 108751783 -43785476 - L1M4b LINE L1 -7102 232 84 6 1414 251 256 44 11 chr5 108752174 108752265 -43784994 + L1M3 LINE L1 4733 4826 -1314 6 1414 548 216 140 21 chr5 108752638 108752874 -43784385 - L1MC5 LINE L1 -283 7678 7415 6 1414 220 203 29 59 chr5 108752882 108752950 -43784309 - PB1D10 SINE Alu -20 97 32 6 1414 225 178 0 0 chr5 108753031 108753076 -43784183 + (GTTTG)n Simple_repeat Simple_repeat 1 45 0 6 1414 638 292 52 48 chr5 108753185 108753433 -43783826 - ORR1E LTR MaLR -110 249 1 6 1414 735 283 61 5 chr5 108753507 108753720 -43783539 - MLT1A1 LTR MaLR 0 408 184 6 1414 225 284 12 12 chr5 108753797 108753879 -43783380 - MLT1A1 LTR MaLR -278 87 6 6 1414 1203 90 78 6 chr5 108753896 108754075 -43783184 + B2_Mm2 SINE B2 2 193 -2 6 1414 312 311 95 80 chr5 108754075 108754487 -43782772 - L1MC5 LINE L1 -834 7127 6710 6 1414 1180 75 0 0 chr5 108754546 108754693 -43782566 - B1_Mus1 SINE Alu 0 148 2 6 1414 603 161 0 26 chr5 108756329 108756444 -43780815 + PB1D9 SINE Alu 9 120 0 6 1414 204 158 0 0 chr5 108756446 108756484 -43780775 + (CAA)n Simple_repeat Simple_repeat 1 38 0 6 1414 1506 179 67 55 chr5 108757034 108757395 -43779864 - ORR1D1 LTR MaLR 0 374 10 6 1414 194 299 208 0 chr5 108757407 108757561 -43779698 - L2 LINE L2 -1292 2127 1942 6 1414 258 32 0 0 chr5 108758212 108758243 -43779016 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1414 277 283 60 10 chr5 108758310 108758410 -43778849 - ID_B1 SINE B4 -3 221 117 6 1414 181 278 49 49 chr5 108758779 108758881 -43778378 + L2c LINE L2 3027 3128 -259 6 1414 684 276 104 0 chr5 108758999 108759191 -43778068 - B3 SINE B2 -4 212 1 6 1414 405 261 25 36 chr5 108760249 108760387 -43776872 - RMER20B LTR ERVK -273 354 221 6 1414 1655 37 0 0 chr5 108760733 108760920 -43776339 + B2_Mm1t SINE B2 2 188 -5 6 1414 299 303 45 18 chr5 108761301 108761412 -43775847 + PB1D10 SINE Alu 2 115 -2 6 1414 747 237 45 0 chr5 108762765 108762921 -43774338 - RSINE1 SINE B4 0 165 3 6 1414 1690 105 34 4 chr5 108762945 108763213 -43774046 - ORR1A2 LTR MaLR -51 276 1 6 1414 7230 102 21 3 chr5 108763213 108764347 -43772912 - ORR1A2-int LTR MaLR 0 1963 809 6 1414 367 227 11 64 chr5 108764390 108764484 -43772775 - MTEb LTR MaLR -12 367 279 6 1414 185 94 0 30 chr5 108766945 108766978 -43770281 + (TC)n Simple_repeat Simple_repeat 2 33 0 6 1414 408 287 37 0 chr5 108766990 108767098 -43770161 - PB1D7 SINE Alu -8 112 1 6 1414 33 0 0 0 chr5 108767973 108768006 -43769253 + AT_rich Low_complexity Low_complexity 1 33 0 6 1414 316 200 0 0 chr5 108769576 108769626 -43767633 - B1_Mus2 SINE Alu -93 54 5 6 1414 201 320 26 0 chr5 108769849 108769927 -43767332 - MIRc SINE MIR -133 135 56 6 1414 3161 42 3 8 chr5 108770047 108770433 -43766826 - L1Md_F3 LINE L1 0 6584 6201 6 1414 2306 107 3 0 chr5 108771158 108771484 -43765775 + ORR1A2 LTR MaLR 1 327 0 6 1414 884 172 7 0 chr5 108771658 108771803 -43765456 + B1_Mur1 SINE Alu 3 148 -1 6 1414 1125 77 21 0 chr5 108771916 108772059 -43765200 + B1_Mm SINE Alu 2 147 0 6 1414 194 0 39 0 chr5 108772076 108772102 -43765157 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 1414 255 125 0 0 chr5 108776496 108776536 -43760723 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1414 544 266 77 15 chr5 108776538 108776668 -43760591 - RSINE1 SINE B4 -25 140 3 6 1414 242 317 48 29 chr5 108777550 108777654 -43759605 + PB1D7 SINE Alu 5 110 -10 6 1414 27 73 0 0 chr5 108777697 108777752 -43759507 + AT_rich Low_complexity Low_complexity 1 55 0 6 1414 338 273 61 0 chr5 108777866 108777965 -43759294 + Lx8 LINE L1 7135 7239 -234 6 1414 200 103 0 49 chr5 108778030 108778071 -43759188 + GA-rich Low_complexity Low_complexity 3 41 0 6 1414 614 246 82 62 chr5 108779107 108779302 -43757957 - B3A SINE B2 0 216 18 6 1414 283 233 138 43 chr5 108779312 108779406 -43757853 - B1_Mur1 SINE Alu -1 148 46 6 1414 2346 282 40 9 chr5 108779847 108780520 -43756739 + Lx8 LINE L1 6304 6997 -476 7 1414 612 308 42 61 chr5 108780535 108780846 -43756413 + Lx8 LINE L1 7122 7426 -47 7 1414 979 227 64 0 chr5 108780863 108781066 -43756193 + B3 SINE B2 1 216 0 7 1414 1432 53 10 16 chr5 108781076 108781268 -43755991 + B2_Mm1t SINE B2 2 192 -1 7 1414 691 258 45 0 chr5 108781444 108781526 -43755733 + B4 SINE B4 6 94 -198 7 1414 250 308 212 8 chr5 108781526 108781644 -43755615 + B1F2 SINE Alu 3 144 -5 7 1414 509 95 187 23 chr5 108781751 108781856 -43755403 + B1_Mur4 SINE Alu 1 150 0 7 1414 600 140 50 42 chr5 108782545 108782664 -43754595 - PB1D9 SINE Alu 0 120 1 7 1414 1692 31 0 0 chr5 108782990 108783182 -43754077 + B2_Mm1a SINE B2 2 193 0 7 1414 353 271 146 58 chr5 108783536 108783673 -43753586 + MLT1A1 LTR MaLR 226 408 0 7 1414 506 253 142 7 chr5 108783701 108783856 -43753403 + ORR1D2 LTR MaLR 1 176 -194 7 1414 534 140 17 9 chr5 108783856 108783971 -43753288 + CT-rich Low_complexity Low_complexity 2 117 0 7 1414 500 243 58 45 chr5 108783972 108784127 -43753132 + ORR1D2 LTR MaLR 163 319 -40 7 1414 267 177 0 139 chr5 108784190 108784262 -43752997 + ORR1D2 LTR MaLR 309 370 0 7 1414 293 308 120 76 chr5 108784612 108784976 -43752283 - MLT1A1 LTR MaLR -1 407 1 7 1414 271 222 57 49 chr5 108784988 108785111 -43752148 - L1M2c LINE L1 -5012 1777 1654 7 1414 442 252 60 47 chr5 108785142 108785292 -43751967 + B4A SINE B4 3 154 -138 7 1414 230 227 121 33 chr5 108785399 108785490 -43751769 - L1MC LINE L1 -2409 3737 3639 7 1414 832 274 46 30 chr5 108785555 108785792 -43751467 - MER21B LTR ERV1 -49 814 574 7 1414 594 235 27 129 chr5 108785837 108786023 -43751236 + B3A SINE B2 2 168 -30 7 1414 1182 62 0 7 chr5 108786070 108786217 -43751042 + B1_Mus2 SINE Alu 2 147 0 7 1414 316 262 94 8 chr5 108786236 108786363 -43750896 + L1MD LINE L1 3073 3210 -2936 7 1414 362 306 122 12 chr5 108786781 108786953 -43750306 + L1ME3B LINE L1 5757 5947 -293 7 1414 1452 138 317 3 chr5 108787009 108787299 -43749960 - ORR1C2 LTR MaLR -3 381 1 7 1414 1902 142 38 43 chr5 108787303 108787649 -43749610 + ORR1D1 LTR MaLR 30 373 -1 7 1414 346 218 9 65 chr5 108788642 108788750 -43748509 + CR1_Mam LINE CR1 1602 1703 -501 7 1414 190 287 20 147 chr5 108789505 108789607 -43747652 + L2b LINE L2 3286 3374 -1 7 1415 862 161 14 14 chr5 108790777 108790916 -43746343 + B1_Mur3 SINE Alu 2 140 -9 7 1415 501 17 0 0 chr5 108790916 108790974 -43746285 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1415 235 297 110 0 chr5 108791704 108791795 -43745464 + RMER15 LTR ERVL 417 517 -58 7 1415 21 36 0 0 chr5 108795970 108795998 -43741261 + GC_rich Low_complexity Low_complexity 1 28 0 7 1415 24 77 0 0 chr5 108796436 108796488 -43740771 + GC_rich Low_complexity Low_complexity 1 52 0 7 1415 188 34 0 33 chr5 108796736 108796766 -43740493 + (CCG)n Simple_repeat Simple_repeat 2 30 0 7 1415 22 35 0 0 chr5 108796776 108796805 -43740454 + GC_rich Low_complexity Low_complexity 1 29 0 7 1415 27 29 0 0 chr5 108796968 108797002 -43740257 + GC_rich Low_complexity Low_complexity 1 34 0 7 1415 207 0 0 0 chr5 108797616 108797639 -43739620 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1415 274 238 75 110 chr5 108800116 108800150 -43737109 + B4A SINE B4 77 217 -75 7 1415 871 45 0 0 chr5 108800150 108800262 -43736997 + B1_Mus1 SINE Alu 27 138 -10 7 1415 21 36 0 0 chr5 108800458 108800486 -43736773 + AT_rich Low_complexity Low_complexity 1 28 0 7 1415 259 258 95 81 chr5 108800490 108800648 -43736611 - MLT1A1 LTR MaLR 0 408 204 7 1415 258 307 101 16 chr5 108801216 108801345 -43735914 - L1ME3A LINE L1 -233 5940 5801 7 1415 324 273 4 31 chr5 108801481 108801594 -43735665 - L1ME1 LINE L1 -264 6180 6068 7 1415 369 325 226 31 chr5 108801663 108802149 -43735110 - L1ME1 LINE L1 -2042 5953 5373 7 1415 429 70 0 0 chr5 108802178 108802235 -43735024 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1415 664 316 161 31 chr5 108802751 108803273 -43733986 + MER63C DNA AcHobo 96 685 -245 7 1415 495 295 92 26 chr5 108803520 108803673 -43733586 - RSINE1 SINE B4 0 165 3 7 1415 239 330 35 9 chr5 108804102 108804218 -43733041 + L2a LINE L2 2293 2411 -1008 7 1415 379 254 0 0 chr5 108804683 108804754 -43732505 - B4 SINE B4 -77 215 145 7 1415 292 280 27 0 chr5 108804767 108804842 -43732417 + L2a LINE L2 3337 3413 -13 7 1415 1004 134 154 5 chr5 108804921 108805116 -43732143 + URR1A DNA MER1_type 3 226 0 7 1415 984 206 28 203 chr5 108805343 108805801 -43731458 - ORR1C1 LTR MaLR 0 378 1 7 1415 351 311 126 45 chr5 108807560 108807806 -43729453 + L1MEc LINE L1 44 309 -6091 7 1415 340 117 26 0 chr5 108808063 108808140 -43729119 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 7 1415 1565 303 8 45 chr5 108808550 108809041 -43728218 - RMER1C Other Other -489 853 402 7 1415 2270 96 14 64 chr5 108809666 108810010 -43727249 - ORR1A2 LTR MaLR 0 327 1 7 1415 1286 255 65 29 chr5 108810131 108810529 -43726730 + MTE2a LTR MaLR 1 419 0 7 1415 1909 150 34 62 chr5 108810846 108811231 -43726028 - ORR1D1 LTR MaLR 0 374 1 7 1415 1128 83 0 7 chr5 108811723 108811869 -43725390 - B1_Mus2 SINE Alu 0 147 3 7 1415 910 281 108 0 chr5 108811948 108812318 -43724941 + L1MB3 LINE L1 5681 6090 -93 7 1415 1061 68 110 0 chr5 108812720 108812866 -43724393 + B2_Mm2 SINE B2 2 163 -32 7 1415 258 32 0 0 chr5 108812866 108812897 -43724362 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 7 1415 531 175 0 0 chr5 108816571 108816725 -43720534 + GA-rich Low_complexity Low_complexity 1 154 0 7 1415 454 356 52 18 chr5 108820646 108820932 -43716327 - MER65D LTR ERV1 0 473 178 7 1415 277 299 134 17 chr5 108820967 108821086 -43716173 + B1_Mm SINE Alu 6 138 -9 7 1415 315 0 0 0 chr5 108821086 108821121 -43716138 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1415 786 195 0 23 chr5 108821220 108821351 -43715908 + B1_Mur4 SINE Alu 1 128 -22 7 1415 1269 97 32 16 chr5 108821862 108822050 -43715209 - B2_Mm2 SINE B2 -4 191 1 7 1415 2770 190 32 112 chr5 108822130 108822323 -43714936 - Lx7 LINE L1 -165 7531 7339 7 1415 287 143 17 67 chr5 108822323 108822383 -43714876 - U2 snRNA snRNA -131 57 1 7 1415 2770 190 32 112 chr5 108822383 108822824 -43714435 - Lx7 LINE L1 -165 7338 6894 7 1415 793 143 13 7 chr5 108822824 108822979 -43714280 + CT-rich Low_complexity Low_complexity 4 159 0 7 1415 551 193 101 0 chr5 108822979 108823098 -43714161 - Lx7 LINE L1 -791 6905 6775 7 1415 675 0 0 0 chr5 108823210 108823285 -43713974 + (TTTTG)n Simple_repeat Simple_repeat 2 76 0 7 1415 1045 109 0 0 chr5 108823285 108823422 -43713837 - B1_Mus2 SINE Alu -10 137 1 7 1415 319 340 70 12 chr5 108823999 108824240 -43713019 - MER65-int LTR ERV1 -1210 3726 3472 7 1415 798 174 0 40 chr5 108824243 108824393 -43712866 + B1_Mm SINE Alu 3 146 -1 7 1415 315 0 0 0 chr5 108824434 108824469 -43712790 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1415 198 0 0 0 chr5 108824793 108824815 -43712444 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1415 1141 68 0 20 chr5 108824815 108824966 -43712293 - B1_Mus1 SINE Alu 0 148 1 7 1415 270 219 48 24 chr5 108825173 108825257 -43712002 - MER65-int LTR ERV1 -2549 2574 2489 7 1415 324 0 0 0 chr5 108825605 108825641 -43711618 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1415 713 211 8 0 chr5 108825668 108825791 -43711468 - RSINE1 SINE B4 -37 128 5 7 1415 303 271 56 6 chr5 108825867 108826027 -43711232 - MER65-int LTR ERV1 -2377 2494 2327 7 1415 390 174 12 0 chr5 108826074 108826160 -43711099 - Lx6 LINE L1 -40 7420 7334 7 1415 506 248 57 11 chr5 108826461 108826653 -43710606 - MER65-int LTR ERV1 -2822 2049 1915 7 1415 779 85 8 0 chr5 108826700 108826830 -43710429 + (CA)n Simple_repeat Simple_repeat 2 132 0 7 1415 351 0 0 0 chr5 108826830 108826868 -43710391 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1415 358 313 0 29 chr5 108827155 108827166 -43710093 + ID SINE ID 72 79 -145 7 1415 533 250 0 68 chr5 108827166 108827299 -43709960 + B1_Mur1 SINE Alu 2 125 -22 7 1415 250 340 20 20 chr5 108827314 108827416 -43709843 + (TGGG)n Simple_repeat Simple_repeat 3 104 0 7 1415 1103 140 11 38 chr5 108827833 108828018 -43709241 + B2_Mm2 SINE B2 2 181 -14 7 1415 1232 75 92 0 chr5 108828018 108828191 -43709068 + B2_Mm2 SINE B2 2 190 -5 7 1415 1186 62 7 0 chr5 108828196 108828341 -43708918 + B1_Mus1 SINE Alu 3 148 0 7 1415 317 279 0 12 chr5 108828403 108828483 -43708776 + ID4 SINE ID 2 80 -3 7 1415 249 321 36 36 chr5 108828629 108828739 -43708520 - LTR75_1 LTR ERV1 -224 322 213 7 1415 1440 69 0 26 chr5 108829533 108829726 -43707533 - B2_Mm1t SINE B2 -1 192 5 7 1415 1475 136 0 35 chr5 108830082 108830142 -43707117 - URR1A DNA MER1_type -5 221 164 7 1415 2008 153 3 3 chr5 108830142 108830451 -43706808 + RLTR10E LTR ERVK 3 311 0 7 1415 1475 136 0 35 chr5 108830451 108830619 -43706640 - URR1A DNA MER1_type -63 163 1 7 1415 567 102 0 0 chr5 108834006 108834094 -43703165 + (CA)n Simple_repeat Simple_repeat 2 89 0 7 1415 1824 137 177 3 chr5 108834331 108834653 -43702606 - ORR1C1 LTR MaLR 0 378 1 7 1415 419 333 13 19 chr5 108835001 108835160 -43702099 - RSINE1 SINE B4 -6 159 2 7 1415 779 274 247 18 chr5 108835191 108836247 -43701012 - L1MC3 LINE L1 -31 7754 6424 7 1415 470 148 73 8 chr5 108836436 108836559 -43700700 + (TATATG)n Simple_repeat Simple_repeat 4 134 0 7 1415 318 294 108 18 chr5 108836559 108836670 -43700589 + B2_Mm2 SINE B2 3 123 -72 7 1415 297 0 0 0 chr5 108836746 108836779 -43700480 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1415 375 275 13 96 chr5 108836779 108836936 -43700323 + B1F2 SINE Alu 6 149 0 7 1415 452 261 69 120 chr5 108836949 108837082 -43700177 - L1MC3 LINE L1 -874 5272 5149 7 1415 1240 54 0 0 chr5 108837082 108837229 -43700030 - B1_Mm SINE Alu 0 147 1 7 1415 452 261 69 120 chr5 108837229 108837369 -43699890 - L1MC3 LINE L1 -998 5148 5013 7 1415 3710 158 73 31 chr5 108837375 108838060 -43699199 - RMER6D LTR ERVK -4 716 3 7 1415 708 301 106 32 chr5 108838089 108838497 -43698762 - L1MC3 LINE L1 -1163 4983 4530 7 1415 1041 211 19 5 chr5 108838497 108838711 -43698548 + ID_B1 SINE B4 5 221 -3 7 1415 708 301 106 32 chr5 108838711 108838754 -43698505 - L1MC3 LINE L1 -1617 4529 4492 7 1415 1325 88 39 0 chr5 108838754 108838935 -43698324 - B2_Mm2 SINE B2 -4 191 4 7 1415 708 301 106 32 chr5 108838935 108838974 -43698285 - L1MC3 LINE L1 -1655 4491 4457 7 1415 525 298 22 30 chr5 108838992 108839127 -43698132 + B4 SINE B4 39 172 -120 8 1415 938 252 41 11 chr5 108839196 108839465 -43697794 - L1MC3 LINE L1 -1687 4459 4183 7 1415 921 138 37 30 chr5 108839471 108839501 -43697758 - B2_Mm1t SINE B2 -2 191 161 8 1415 423 0 0 0 chr5 108839501 108839548 -43697711 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 8 1415 921 138 37 30 chr5 108839548 108839681 -43697578 - B2_Mm1t SINE B2 -33 160 27 8 1415 1163 55 7 0 chr5 108839691 108839837 -43697422 - B1_Mus1 SINE Alu -1 147 1 8 1415 815 119 179 0 chr5 108840016 108840167 -43697092 + B2_Mm2 SINE B2 3 180 -15 8 1415 342 61 0 0 chr5 108840167 108840216 -43697043 + (GA)n Simple_repeat Simple_repeat 1 49 0 8 1415 975 141 0 26 chr5 108840225 108840378 -43696881 + B1_Mur3 SINE Alu 1 149 0 8 1415 261 279 54 16 chr5 108840441 108840627 -43696632 - L1MC3 LINE L1 -2108 4038 3846 7 1415 656 267 7 0 chr5 108840941 108841087 -43696172 + B1_Mur2 SINE Alu 1 147 -2 8 1415 546 274 121 39 chr5 108841180 108841205 -43696054 - B3A SINE B2 0 198 178 8 1415 3624 79 52 0 chr5 108841205 108841701 -43695558 - Lx3B LINE L1 -8 6965 6444 8 1415 546 274 121 39 chr5 108841701 108841857 -43695402 - B3A SINE B2 -21 177 2 8 1415 871 255 49 5 chr5 108841983 108842188 -43695071 - MER21B LTR ERV1 -77 786 573 8 1415 309 269 86 9 chr5 108842196 108842301 -43694958 - MLT1A1 LTR MaLR -4 404 292 8 1415 243 0 0 0 chr5 108842425 108842452 -43694807 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1415 1129 92 99 44 chr5 108842555 108842736 -43694523 + B2_Mm2 SINE B2 1 191 -4 8 1415 1305 54 0 0 chr5 108842736 108842902 -43694357 + (GGA)n Simple_repeat Simple_repeat 3 168 0 8 1415 392 257 0 0 chr5 108843311 108843385 -43693874 - ID4 SINE ID -2 81 8 8 1415 406 299 97 0 chr5 108844051 108844185 -43693074 - ID_B1 SINE B4 0 224 78 8 1415 1179 81 0 0 chr5 108844245 108844393 -43692866 - B1_Mus1 SINE Alu 0 148 1 8 1415 764 223 21 98 chr5 108844516 108844592 -43692667 - ORR1D1 LTR MaLR -141 233 167 8 1415 229 45 43 43 chr5 108844592 108844639 -43692620 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 8 1415 764 250 19 110 chr5 108844639 108844819 -43692440 - ORR1D1 LTR MaLR -204 180 13 8 1415 1194 64 0 0 chr5 108845022 108845178 -43692081 + (TTTC)n Simple_repeat Simple_repeat 1 156 0 8 1415 288 154 0 0 chr5 108845189 108845241 -43692018 + T-rich Low_complexity Low_complexity 1 52 0 8 1415 455 221 48 27 chr5 108845242 108845428 -43691831 - RMER17C LTR ERVK -136 274 85 8 1415 297 75 0 0 chr5 108845428 108845468 -43691791 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1415 7495 90 7 19 chr5 108845468 108846525 -43690734 - Lx3A LINE L1 -1 6980 5937 8 1415 695 144 0 0 chr5 108846525 108846636 -43690623 + B2_Mm2 SINE B2 5 115 -80 8 1415 507 17 0 0 chr5 108846795 108846855 -43690404 + (GA)n Simple_repeat Simple_repeat 1 60 0 8 1415 194 120 200 0 chr5 108846859 108846909 -43690350 + L2 LINE L2 2788 2847 -572 8 1415 22 35 0 0 chr5 108847839 108847868 -43689391 + AT_rich Low_complexity Low_complexity 1 29 0 8 1415 21 36 0 0 chr5 108848060 108848088 -43689171 + AT_rich Low_complexity Low_complexity 1 28 0 8 1415 294 73 0 0 chr5 108849093 108849134 -43688125 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 1415 1345 67 44 6 chr5 108849449 108849630 -43687629 - B2_Mm2 SINE B2 -6 189 2 8 1415 628 274 124 69 chr5 108850655 108850929 -43686330 + B4A SINE B4 1 289 -3 8 1415 517 226 9 38 chr5 108850965 108851071 -43686188 + PB1D7 SINE Alu 17 119 -1 8 1415 218 365 0 0 chr5 108851152 108851336 -43685923 + (AGCTG)n Simple_repeat Simple_repeat 1 184 0 8 1415 248 328 0 0 chr5 108851663 108851721 -43685538 - MER45B DNA Tip100 -2 1038 981 8 1415 189 0 0 0 chr5 108855123 108855144 -43682115 + (TTG)n Simple_repeat Simple_repeat 1 21 0 8 1415 216 246 53 0 chr5 108858424 108858481 -43678778 + L2b LINE L2 3099 3158 -217 8 1415 1171 61 0 39 chr5 108858588 108858741 -43678518 - B1_Mus1 SINE Alu 0 148 2 8 1415 840 166 421 34 chr5 108861523 108861823 -43675436 - MTD LTR MaLR -2 417 2 8 1415 806 139 43 21 chr5 108864129 108864269 -43672990 + URR1B DNA MER1_type 83 225 0 8 1415 794 129 63 28 chr5 108866062 108866205 -43671054 + B1_Mur4 SINE Alu 3 150 0 8 1415 251 198 0 129 chr5 108867976 108868069 -43669190 - MT2B LTR ERVL -354 247 167 8 1415 525 83 9 2 chr5 108867990 108868071 -43669188 - B1_Mus1 SINE Alu -230 84 1 8 1415 531 72 464 0 chr5 108868506 108868603 -43668656 + B1_Mus1 SINE Alu 1 142 -6 8 1415 186 43 0 0 chr5 108868604 108868627 -43668632 + (CAA)n Simple_repeat Simple_repeat 1 23 0 8 1415 688 87 0 0 chr5 108869658 108869750 -43667509 + 4.5SRNA scRNA scRNA 1 92 -2 8 1415 304 114 0 48 chr5 108869750 108869790 -43667469 + A-rich Low_complexity Low_complexity 5 42 0 8 1415 958 54 139 0 chr5 108869790 108869919 -43667340 + B1_Mm SINE Alu 1 147 0 8 1415 304 114 0 48 chr5 108869919 108869961 -43667298 + A-rich Low_complexity Low_complexity 43 83 0 8 1415 218 260 15 54 chr5 108870143 108870273 -43666986 + CT-rich Low_complexity Low_complexity 4 128 0 8 1415 240 35 0 0 chr5 108871546 108871575 -43665684 + (CCTG)n Simple_repeat Simple_repeat 3 31 0 8 1415 292 301 0 0 chr5 108871672 108871765 -43665494 + CT-rich Low_complexity Low_complexity 1 93 0 8 1415 825 124 0 0 chr5 108873220 108873349 -43663910 + (TA)n Simple_repeat Simple_repeat 2 130 0 8 1415 255 229 24 30 chr5 108878675 108878754 -43658505 - PB1D7 SINE Alu -8 112 31 8 1415 343 322 49 15 chr5 108879449 108879467 -43657792 + L1MD1 LINE L1 4369 4385 -1761 8 1415 1149 87 0 7 chr5 108879467 108879618 -43657641 + B1_Mur4 SINE Alu 1 150 0 8 1415 533 304 50 20 chr5 108879618 108879827 -43657432 + L1MD1 LINE L1 4386 4603 -1543 8 1415 258 204 179 5 chr5 108879839 108879973 -43657286 + L1MD1 LINE L1 5208 5379 -767 8 1415 433 152 196 0 chr5 108880046 108880138 -43657121 + PB1D9 SINE Alu 11 120 0 8 1415 514 266 180 28 chr5 108880205 108880470 -43656789 + L1MD1 LINE L1 5546 5852 -390 8 1415 1138 63 0 0 chr5 108880491 108880633 -43656626 + B1_Mus1 SINE Alu 7 148 0 8 1415 239 0 0 31 chr5 108880966 108880998 -43656261 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1415 254 265 179 12 chr5 108881297 108881381 -43655878 - Kanga2_a DNA Tc2 -672 216 119 8 1415 983 129 53 48 chr5 108882096 108882283 -43654976 + B2_Mm2 SINE B2 2 189 -6 8 1415 840 252 39 10 chr5 108882684 108882888 -43654371 + B3 SINE B2 1 210 -6 8 1415 270 311 64 24 chr5 108882955 108883080 -43654179 - LTR40a LTR ERVL -4 515 386 8 1415 414 53 0 0 chr5 108883497 108883554 -43653705 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1415 440 264 15 88 chr5 108883731 108883868 -43653391 + B4A SINE B4 46 172 -120 8 1415 324 0 0 0 chr5 108883887 108883923 -43653336 + (A)n Simple_repeat Simple_repeat 1 36 0 8 1415 279 0 0 0 chr5 108883983 108884014 -43653245 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1415 369 282 70 35 chr5 108884063 108884177 -43653082 + ID_B1 SINE B4 107 224 0 8 1415 707 284 105 62 chr5 108884284 108884655 -43652604 - L1MB8 LINE L1 -198 5980 5594 8 1415 769 144 133 32 chr5 108884690 108884848 -43652411 + MT2A LTR ERVL 360 533 0 8 1415 373 132 0 29 chr5 108884892 108884962 -43652297 + B3 SINE B2 149 216 0 8 1415 2067 134 19 60 chr5 108885092 108885388 -43651871 - RMER1C Other Other 0 1342 1054 8 1415 1160 83 83 0 chr5 108885388 108885557 -43651702 - B2_Mm2 SINE B2 -10 185 3 8 1415 2067 134 19 60 chr5 108885557 108885625 -43651634 - RMER1C Other Other -289 1053 993 8 1415 1855 142 7 7 chr5 108885625 108885916 -43651343 - ORR1A4 LTR MaLR 0 329 39 8 1415 619 268 51 0 chr5 108886019 108886157 -43651102 - RSINE1 SINE B4 -17 148 4 8 1415 316 243 27 0 chr5 108886173 108886247 -43651012 - ID4 SINE ID -4 79 4 8 1415 186 43 0 0 chr5 108886368 108886391 -43650868 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 1415 1263 56 0 24 chr5 108886391 108886548 -43650711 - B2_Mm2 SINE B2 -33 162 7 8 1415 278 310 12 12 chr5 108886582 108886667 -43650592 + GA-rich Low_complexity Low_complexity 2 86 0 8 1415 279 274 0 16 chr5 108886602 108886665 -43650594 + polypurine Low_complexity Low_complexity 3 64 0 8 1415 328 274 47 65 chr5 108886667 108886882 -43650377 - L1MC5 LINE L1 -115 7846 7636 8 1415 772 211 124 21 chr5 108888175 108888369 -43648890 + B3 SINE B2 2 215 -1 8 1415 284 326 128 13 chr5 108888672 108888821 -43648438 - L2 LINE L2 -529 2890 2725 8 1415 717 34 0 0 chr5 108889321 108889409 -43647850 + (TTTC)n Simple_repeat Simple_repeat 4 91 0 8 1415 891 43 0 0 chr5 108889411 108889527 -43647732 - B1_Mus1 SINE Alu -12 136 21 8 1415 670 177 0 0 chr5 108889665 108889778 -43647481 + PB1D9 SINE Alu 1 113 -7 8 1415 246 62 0 0 chr5 108889779 108889811 -43647448 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 8 1415 23 86 0 0 chr5 108890404 108890462 -43646797 + GC_rich Low_complexity Low_complexity 1 58 0 8 1415 495 267 35 43 chr5 108892967 108893108 -43644151 + B1F SINE Alu 4 143 -6 8 1415 444 287 40 24 chr5 108894018 108894143 -43643116 + PB1 SINE Alu 1 127 0 8 1415 830 91 0 0 chr5 108894491 108894612 -43642647 - B1_Mus2 SINE Alu 0 147 27 8 1415 21 0 0 0 chr5 108894616 108894637 -43642622 + AT_rich Low_complexity Low_complexity 1 21 0 8 1415 535 300 12 30 chr5 108894637 108894802 -43642457 - RSINE1 SINE B4 0 165 4 8 1415 651 263 27 11 chr5 108896646 108896828 -43640431 - ID_B1 SINE B4 -41 251 70 8 1415 21 57 0 0 chr5 108896865 108896900 -43640359 + AT_rich Low_complexity Low_complexity 1 35 0 8 1415 1054 72 53 0 chr5 108896976 108897128 -43640131 + B2_Mm2 SINE B2 2 161 -34 8 1415 261 0 0 0 chr5 108897128 108897157 -43640102 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 8 1415 250 311 0 16 chr5 108897166 108897228 -43640031 - RSINE1 SINE B4 -72 93 33 8 1415 958 74 7 7 chr5 108897750 108897886 -43639373 + B1_Mus2 SINE Alu 11 146 -1 8 1415 189 0 0 0 chr5 108897895 108897916 -43639343 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 9 1415 225 0 0 0 chr5 108899544 108899569 -43637690 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1415 547 294 29 0 chr5 108899628 108899764 -43637495 + B1F SINE Alu 1 140 -9 9 1415 699 263 15 26 chr5 108900049 108900265 -43636994 + B3A SINE B2 1 207 -9 9 1415 219 154 0 25 chr5 108902263 108902303 -43634956 + GA-rich Low_complexity Low_complexity 2 40 0 9 1415 258 105 0 0 chr5 108902303 108902341 -43634918 + (GGA)n Simple_repeat Simple_repeat 3 40 0 9 1415 1072 209 177 128 chr5 108902354 108902777 -43634482 - MT2A LTR ERVL -89 444 1 9 1415 857 246 43 10 chr5 108903343 108903552 -43633707 - B3 SINE B2 0 216 1 9 1415 594 289 34 0 chr5 108905533 108905682 -43631577 - ID_B1 SINE B4 -67 157 4 9 1415 1385 223 113 16 chr5 108906237 108906619 -43630640 - MTD LTR MaLR 0 419 1 9 1415 1618 47 0 0 chr5 108907518 108907710 -43629549 + B2_Mm1a SINE B2 2 193 0 9 1415 10887 167 104 30 chr5 108907793 108909627 -43627632 - L1_Mur3 LINE L1 -1589 4288 2234 9 1415 234 0 0 0 chr5 108909627 108909653 -43627606 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 9 1415 10887 151 103 32 chr5 108909653 108909878 -43627381 - L1_Mur3 LINE L1 -3637 2243 2030 9 1415 228 35 0 0 chr5 108909878 108909907 -43627352 + (TA)n Simple_repeat Simple_repeat 2 30 0 9 1415 1000 45 114 0 chr5 108909909 108910041 -43627218 - B1_Mm SINE Alu 0 147 1 9 1415 10887 167 100 63 chr5 108910041 108911199 -43626060 - L1_Mur3 LINE L1 -3851 2029 914 9 1415 288 0 0 0 chr5 108911199 108911231 -43626028 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 9 1415 2436 199 95 128 chr5 108911231 108911631 -43625628 - L1_Mur3 LINE L1 -6815 913 479 9 1415 285 242 110 29 chr5 108911804 108911940 -43625319 + MER58D DNA MER1_type 225 371 -15 9 1415 187 68 43 43 chr5 108912554 108912600 -43624659 + (TTTG)n Simple_repeat Simple_repeat 1 46 0 9 1415 569 191 26 9 chr5 108912600 108912716 -43624543 - PB1D9 SINE Alu -1 119 2 9 1415 671 244 25 25 chr5 108913472 108913632 -43623627 - RSINE1 SINE B4 -2 163 4 9 1415 341 215 41 123 chr5 108913830 108913847 -43623412 + MT2B LTR ERVL 152 158 -443 9 1415 664 194 108 0 chr5 108913847 108913976 -43623283 + B1_Mur1 SINE Alu 2 144 -5 9 1415 1548 43 32 0 chr5 108915440 108915626 -43621633 + B2_Mm1t SINE B2 1 192 -1 9 1415 234 0 0 0 chr5 108915665 108915691 -43621568 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1415 1609 36 16 0 chr5 108915704 108915896 -43621363 + B2_Mm2 SINE B2 1 195 0 9 1415 1389 238 104 6 chr5 108918628 108918992 -43618267 - MTD LTR MaLR -14 405 6 9 1415 2806 259 39 84 chr5 108919002 108920062 -43617197 - MTD-int LTR MaLR -4 1254 243 9 1415 616 172 17 33 chr5 108920069 108920249 -43617010 + CT-rich Low_complexity Low_complexity 2 178 0 9 1415 3447 192 143 14 chr5 108920269 108920669 -43616590 - Lx5 LINE L1 0 7050 6580 9 176 3588 8 5 0 chr5 108920669 108921063 -43616196 - MTA_Mm LTR MaLR 0 396 1 9 1416 9485 25 5 0 chr5 108921063 108922156 -43615103 - MTA_Mm-int LTR MaLR 0 1098 1 9 1416 3588 8 5 0 chr5 108922156 108922550 -43614709 - MTA_Mm LTR MaLR 0 396 1 9 1416 3447 192 143 14 chr5 108922550 108922876 -43614383 - Lx5 LINE L1 -471 6579 6230 9 1416 630 167 0 0 chr5 108922903 108923005 -43614254 + B1_Mur2 SINE Alu 21 122 -27 9 1416 270 115 0 0 chr5 108923013 108923065 -43614194 + (TCTG)n Simple_repeat Simple_repeat 2 53 0 9 1416 487 149 62 31 chr5 108923082 108923179 -43614080 + B1_Mur1 SINE Alu 43 142 -7 9 1416 366 135 0 0 chr5 108923220 108923272 -43613987 + ID4 SINE ID 4 55 -28 9 1416 210 167 50 0 chr5 108923321 108923381 -43613878 + CT-rich Low_complexity Low_complexity 2 64 0 9 1416 259 207 121 44 chr5 108923588 108923679 -43613580 - RLTR11B LTR ERVK -72 381 284 9 1416 725 270 0 113 chr5 108923752 108924044 -43613215 - RLTR11B LTR ERVK -188 265 7 9 1416 270 0 0 0 chr5 108925128 108925158 -43612101 + (TG)n Simple_repeat Simple_repeat 2 31 0 9 1416 535 290 36 14 chr5 108925162 108925302 -43611957 - RSINE1 SINE B4 -21 144 2 9 1416 629 168 16 0 chr5 108925334 108925459 -43611800 + (CATA)n Simple_repeat Simple_repeat 2 128 0 9 1416 687 234 186 6 chr5 108925459 108925631 -43611628 - B3 SINE B2 -13 203 1 9 1416 1162 68 0 0 chr5 108925947 108926095 -43611164 + B1_Mus1 SINE Alu 1 148 0 9 1416 227 372 23 0 chr5 108926442 108926528 -43610731 + MLT1A0 LTR MaLR 20 107 -258 9 1416 225 213 0 21 chr5 108927491 108927539 -43609720 + L1MC LINE L1 5411 5457 -876 9 1416 22 0 0 0 chr5 108929856 108929878 -43607381 + AT_rich Low_complexity Low_complexity 1 22 0 9 1416 348 103 0 0 chr5 108932202 108932260 -43604999 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1416 374 39 19 0 chr5 108932643 108932695 -43604564 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1416 418 260 79 88 chr5 108933551 108933620 -43603639 + MER2 DNA MER2_type 115 183 -162 9 1416 719 199 35 0 chr5 108933620 108933761 -43603498 - B1_Mus2 SINE Alu 0 147 2 9 1416 418 260 79 88 chr5 108933761 108933919 -43603340 + MER2 DNA MER2_type 184 340 -5 9 1416 1914 156 83 30 chr5 108934703 108935175 -43602084 - RMER4B LTR ERVK 0 466 17 9 1416 248 189 129 32 chr5 108935260 108935353 -43601906 - L1M5 LINE L1 -576 5868 5767 9 1416 623 178 269 34 chr5 108935392 108935567 -43601692 - B3 SINE B2 0 216 1 9 1416 725 123 0 9 chr5 108935708 108935823 -43601436 - B1_Mus1 SINE Alu -32 116 3 9 1416 385 242 20 135 chr5 108935823 108935859 -43601400 - MT2B LTR ERVL -449 152 134 9 1416 22132 46 26 11 chr5 108936042 108937155 -43600104 - L1Md_F2 LINE L1 0 6582 5456 9 1416 1640 31 0 20 chr5 108937155 108937352 -43599907 - B2_Mm1a SINE B2 0 193 1 9 1416 22132 57 1 19 chr5 108937352 108938606 -43598653 - L1Md_F2 LINE L1 -428 5455 4229 9 1416 1630 42 0 0 chr5 108938606 108938795 -43598464 - B2_Mm1t SINE B2 -3 190 2 9 1416 22132 57 1 19 chr5 108938795 108939979 -43597280 - L1Md_F2 LINE L1 -1655 4228 3061 9 1416 331 292 78 0 chr5 108940150 108940304 -43596955 + L1MC1 LINE L1 5659 5824 -520 9 1416 396 248 255 0 chr5 108940308 108940449 -43596810 + B3A SINE B2 4 180 -18 9 1416 555 118 0 0 chr5 108940463 108940548 -43596711 + (GA)n Simple_repeat Simple_repeat 1 85 0 9 1416 458 186 73 132 chr5 108940552 108940756 -43596503 + L1MC1 LINE L1 5859 6050 -283 9 1416 195 42 0 0 chr5 108941200 108941224 -43596035 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 9 1416 1007 206 50 10 chr5 108942105 108942306 -43594953 - B3 SINE B2 -3 213 5 9 1416 567 0 0 0 chr5 108942646 108942709 -43594550 + (TC)n Simple_repeat Simple_repeat 1 63 0 9 1416 212 125 42 0 chr5 108943288 108943336 -43593923 + A-rich Low_complexity Low_complexity 2 51 0 9 1416 196 100 50 0 chr5 108944330 108944370 -43592889 + (GA)n Simple_repeat Simple_repeat 2 43 0 9 1416 474 18 0 0 chr5 108945274 108945329 -43591930 + (CA)n Simple_repeat Simple_repeat 2 56 0 9 1416 1071 137 84 64 chr5 108945927 108946130 -43591129 + RLTR31A_Mm LTR ERVK 1 207 -377 9 1416 1107 125 79 42 chr5 108946596 108946866 -43590393 + RLTR31A_Mm LTR ERVK 193 584 0 9 1416 595 292 96 35 chr5 108949654 108949853 -43587406 + B3A SINE B2 6 216 0 9 1416 25 31 0 0 chr5 108949948 108949980 -43587279 + AT_rich Low_complexity Low_complexity 1 32 0 9 1416 2059 141 11 86 chr5 108950383 108950825 -43586434 + RMER17C LTR ERVK 1 409 -1 9 1416 539 307 21 58 chr5 108952578 108952607 -43584652 + CYRA11_Mm Unknown Y-chromosome 144 163 -454 9 1416 1387 153 9 5 chr5 108952607 108952830 -43584429 - URR1B DNA MER1_type 0 225 2 9 1416 261 180 0 0 chr5 108954712 108954762 -43582497 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1416 1312 163 18 0 chr5 108955992 108956213 -43581046 + URR1B DNA MER1_type 1 225 0 9 1416 734 145 48 16 chr5 108956641 108956767 -43580492 + B1_Mus1 SINE Alu 19 148 0 9 1416 362 326 0 0 chr5 108957503 108957592 -43579667 + PB1D10 SINE Alu 1 89 -28 9 1416 582 300 12 32 chr5 108957592 108957676 -43579583 + ID_B1 SINE B4 86 251 -41 9 1416 848 231 46 0 chr5 108958250 108958423 -43578836 + B3 SINE B2 32 212 -4 9 1416 744 303 77 66 chr5 108958431 108958660 -43578599 + L1MB3 LINE L1 5605 5834 -349 9 1416 6861 70 41 12 chr5 108958660 108959581 -43577678 + Lx3_Mus LINE L1 6060 7007 -2 9 1416 744 303 77 66 chr5 108959581 108959923 -43577336 + L1MB3 LINE L1 5835 6181 -2 9 1416 368 236 21 44 chr5 108960275 108960378 -43576881 + B4A SINE B4 1 100 -192 9 1416 770 196 22 0 chr5 108960780 108961004 -43576255 + GA-rich Low_complexity Low_complexity 1 228 0 9 1416 387 141 0 0 chr5 108961435 108961499 -43575760 + (A)n Simple_repeat Simple_repeat 1 64 0 9 1416 377 229 74 61 chr5 108961785 108961948 -43575311 + RLTR15 LTR ERVK 179 343 -16 9 1416 289 296 96 0 chr5 108962188 108962323 -43574936 - L1M2 LINE L1 -690 5484 5337 9 1416 635 94 10 0 chr5 108962331 108962427 -43574832 + (TCCC)n Simple_repeat Simple_repeat 4 100 0 9 1416 223 329 26 0 chr5 108962436 108962512 -43574747 - B1_Mur4 SINE Alu -5 145 68 9 1416 490 298 71 0 chr5 108962547 108962688 -43574571 + RSINE1 SINE B4 5 155 -10 9 1416 869 178 14 0 chr5 108962738 108962884 -43574375 + B1_Mus1 SINE Alu 1 148 0 9 1416 241 200 64 39 chr5 108963006 108963084 -43574175 - L1MD3 LINE L1 -17 7978 7899 9 1416 543 259 50 7 chr5 108963191 108963331 -43573928 - B1_Mur1 SINE Alu -1 148 3 9 1416 270 317 86 17 chr5 108963335 108963569 -43573690 - L1MC3 LINE L1 -197 7588 7339 9 1416 534 276 65 4 chr5 108963891 108964138 -43573121 - L1M5 LINE L1 -2732 3414 3153 9 1416 328 224 5 2 chr5 108964264 108964336 -43572923 + PB1D10 SINE Alu 34 107 -42 9 1416 684 24 0 0 chr5 108964610 108964692 -43572567 + (TC)n Simple_repeat Simple_repeat 1 82 0 9 1416 324 0 0 0 chr5 108964692 108964727 -43572532 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1416 527 249 15 25 chr5 108964757 108964957 -43572302 - L1M2 LINE L1 -853 5290 5089 9 1416 1655 210 54 6 chr5 108965592 108965941 -43571318 + ORR1D1 LTR MaLR 5 370 -4 9 1416 228 250 0 15 chr5 108966271 108966336 -43570923 + HAL1 LINE L1 1060 1123 -1384 9 1416 183 42 0 0 chr5 108966634 108966658 -43570601 + (CAA)n Simple_repeat Simple_repeat 1 24 0 9 1416 1159 224 9 0 chr5 108967555 108967769 -43569490 + B3 SINE B2 1 216 0 9 1416 636 240 80 0 chr5 108968118 108968243 -43569016 + B1_Mur1 SINE Alu 2 136 -13 9 1416 1230 48 7 0 chr5 108968276 108968421 -43568838 - B1_Mm SINE Alu 0 147 2 9 1416 294 183 65 78 chr5 108968634 108968711 -43568548 + PB1D9 SINE Alu 32 107 -13 1 1416 638 229 27 20 chr5 108968935 108969082 -43568177 - B1_Mur1 SINE Alu -1 148 1 1 1416 287 104 21 0 chr5 108969110 108969158 -43568101 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 1 1416 654 276 6 41 chr5 108969158 108969328 -43567931 - RSINE1 SINE B4 -1 164 1 1 1416 394 238 75 47 chr5 108969402 108969508 -43567751 - B1F2 SINE Alu 0 149 41 1 1416 1685 176 84 8 chr5 108969764 108970131 -43567128 - Lx9 LINE L1 -1 7643 7249 1 1416 1725 230 62 35 chr5 108970296 108970702 -43566557 + MTD LTR MaLR 1 417 -2 1 1416 209 33 33 0 chr5 108978627 108978657 -43558602 + (GAAA)n Simple_repeat Simple_repeat 1 31 0 1 1416 288 239 54 18 chr5 108980580 108980691 -43556568 + (TCTCTG)n Simple_repeat Simple_repeat 5 119 0 1 1416 1130 201 26 5 chr5 108980713 108980908 -43556351 - B3 SINE B2 -17 199 1 1 1416 180 0 0 0 chr5 108980939 108980959 -43556300 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1 1416 323 305 82 52 chr5 108980962 108981097 -43556162 - ID_B1 SINE B4 -2 222 84 1 1416 334 269 4 109 chr5 108981356 108981514 -43555745 - B1_Mur4 SINE Alu -13 137 4 1 1416 347 239 0 27 chr5 108981574 108981647 -43555612 + B3A SINE B2 1 71 -127 1 1416 965 246 138 24 chr5 108982016 108982399 -43554860 + RLTR28B LTR ERVL 1 427 -54 1 1416 791 216 6 41 chr5 108985100 108985269 -43551990 - B3A SINE B2 0 198 36 1 1416 360 310 0 0 chr5 108985334 108985421 -43551838 + B3 SINE B2 1 87 -129 1 1416 522 202 37 0 chr5 108986438 108986547 -43550712 - B1_Mur2 SINE Alu 0 149 37 1 1416 244 287 42 21 chr5 108986473 108986552 -43550707 - MT2B LTR ERVL -333 268 188 1 1416 2134 143 61 8 chr5 108986552 108986911 -43550348 + ORR1C1 LTR MaLR 1 378 0 1 1416 244 287 42 21 chr5 108986911 108986927 -43550332 - MT2B LTR ERVL -414 187 172 1 1416 955 139 85 17 chr5 108988257 108988419 -43548840 + B2_Mm2 SINE B2 3 176 -19 1 1416 447 19 0 0 chr5 108988419 108988471 -43548788 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 1 1416 955 139 85 17 chr5 108988471 108988484 -43548775 + B2_Mm2 SINE B2 177 189 -6 1 1416 1980 92 195 8 chr5 108988745 108989079 -43548180 - ORR1B1 LTR MaLR -8 386 1 1 1416 241 171 0 0 chr5 108989786 108989821 -43547438 + B3 SINE B2 9 43 -173 1 1416 1179 68 7 0 chr5 108989821 108989968 -43547291 + B1_Mus1 SINE Alu 1 148 0 1 1416 218 200 0 0 chr5 108989971 108990021 -43547238 + A-rich Low_complexity Low_complexity 1 50 0 1 1416 809 240 44 28 chr5 108990021 108990201 -43547058 + B3 SINE B2 27 209 -7 1 1416 296 254 145 48 chr5 108990200 108990324 -43546935 - B1F SINE Alu -13 136 1 1 1416 375 239 0 0 chr5 108990710 108990777 -43546482 - ID4_ SINE ID -13 70 4 1 1416 350 284 0 200 chr5 108990781 108990966 -43546293 - B1F1 SINE Alu 0 149 2 1 1416 481 270 169 70 chr5 108990979 108991222 -43546037 - L1M5 LINE L1 -2714 3432 3166 1 1416 395 273 39 29 chr5 108991270 108991372 -43545887 - RSINE1 SINE B4 -19 146 44 1 1416 798 109 0 21 chr5 108991453 108991593 -43545666 + (TTC)n Simple_repeat Simple_repeat 1 137 0 1 1416 315 0 0 0 chr5 108991594 108991629 -43545630 + (TTCC)n Simple_repeat Simple_repeat 2 36 0 1 1416 827 182 30 0 chr5 108991654 108991786 -43545473 - B1_Mur4 SINE Alu -13 137 2 1 1416 364 265 176 24 chr5 108991798 108992226 -43545033 - L1M5 LINE L1 -3165 2981 2476 1 1416 306 210 81 0 chr5 108992292 108992354 -43544905 - PB1D7 SINE Alu -52 68 2 1 1416 1029 72 0 0 chr5 108992982 108993121 -43544138 - L1_Mus1 LINE L1 0 6567 6429 1 1416 297 0 0 0 chr5 108993167 108993200 -43544059 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1416 381 276 57 9 chr5 108993209 108993315 -43543944 + PB1D10 SINE Alu 1 111 -6 1 1416 316 294 25 119 chr5 108999775 108999878 -43537381 + MT2B2 LTR ERVL 76 159 -425 1 1416 625 211 35 9 chr5 108999878 108999993 -43537266 + B1_Mus2 SINE Alu 1 118 -29 1 1416 813 262 35 116 chr5 109001526 109001613 -43535646 + MTE2a LTR MaLR 1 88 -291 1 1416 509 139 307 0 chr5 109001613 109001714 -43535545 - B1_Mus2 SINE Alu -13 134 3 2 1416 813 264 35 110 chr5 109001714 109001921 -43535338 + MTE2a LTR MaLR 89 262 -117 1 1416 454 245 138 92 chr5 109001954 109002215 -43535044 - L1MD LINE L1 -467 5775 5503 3 1416 225 245 0 0 chr5 109002460 109002513 -43534746 - L1MC LINE L1 -1191 4955 4903 4 1416 430 270 156 9 chr5 109002550 109002774 -43534485 - L1MD LINE L1 -1321 4825 4569 3 1416 409 169 92 31 chr5 109002910 109003008 -43534251 - PB1D10 SINE Alu -8 109 6 5 1416 365 274 252 13 chr5 109003125 109003753 -43533506 - L1MD LINE L1 -1868 4278 3488 3 1416 993 47 0 0 chr5 109003754 109003882 -43533377 + B2_Mm2 SINE B2 1 128 -67 6 1416 644 291 55 15 chr5 109004180 109004379 -43532880 - ID_B1 SINE B4 -17 207 1 7 1416 460 261 35 84 chr5 109004523 109004665 -43532594 - B1_Mus1 SINE Alu -11 137 3 8 1416 332 214 23 35 chr5 109006084 109006171 -43531088 + B4A SINE B4 1 86 -206 9 1416 358 258 50 11 chr5 109006157 109006270 -43530989 + B1_Mur2 SINE Alu 18 136 -13 1 1416 186 43 0 0 chr5 109006271 109006294 -43530965 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1416 404 320 167 49 chr5 109006310 109006556 -43530703 + B4 SINE B4 10 284 -8 1 1416 180 111 0 0 chr5 109006607 109006634 -43530625 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1 1416 328 288 0 180 chr5 109006645 109006823 -43530436 + RSINE1 SINE B4 3 148 -17 1 1416 363 180 6 59 chr5 109006891 109006992 -43530267 + B1_Mus1 SINE Alu 2 100 -20 1 1416 1809 206 43 36 chr5 109007309 109007967 -43529292 + L1_Mur3 LINE L1 892 1558 -4319 1 1416 1029 122 0 0 chr5 109007967 109008114 -43529145 - B1_Mus1 SINE Alu 0 148 2 1 1416 1809 180 57 49 chr5 109008114 109008234 -43529025 + L1_Mur3 LINE L1 1559 1678 -4199 1 1416 3129 155 17 6 chr5 109008216 109008755 -43528504 + L1_Mur3 LINE L1 3563 4107 -1770 1 1416 709 213 13 7 chr5 109008752 109008903 -43528356 - Lx5 LINE L1 -204 6846 6695 1 1416 401 352 20 7 chr5 109008895 109009041 -43528218 + Lx5 LINE L1 6814 6961 -89 1 1416 32 43 0 0 chr5 109009259 109009305 -43527954 + AT_rich Low_complexity Low_complexity 1 46 0 2 1416 232 297 14 0 chr5 109012830 109012904 -43524355 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1416 216 288 30 15 chr5 109012944 109013011 -43524248 + ID SINE ID 3 70 -154 2 1416 417 70 0 0 chr5 109013581 109013638 -43523621 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 1416 774 174 223 0 chr5 109013842 109014026 -43523233 - URR1B DNA MER1_type 0 225 1 2 1416 24 0 0 0 chr5 109014980 109015004 -43522255 + AT_rich Low_complexity Low_complexity 1 24 0 2 1416 1518 43 16 0 chr5 109016551 109016739 -43520520 + B2_Mm1t SINE B2 2 192 -1 2 1416 393 117 0 0 chr5 109016836 109016896 -43520363 + (A)n Simple_repeat Simple_repeat 1 60 0 2 1416 648 265 0 7 chr5 109017530 109017667 -43519592 - B1_Mur2 SINE Alu -13 136 1 2 1416 40 0 0 0 chr5 109018385 109018425 -43518834 + AT_rich Low_complexity Low_complexity 1 40 0 2 1416 534 331 0 12 chr5 109018425 109018590 -43518669 - RSINE1 SINE B4 0 165 3 3 1416 230 328 133 55 chr5 109018613 109018884 -43518375 - MLT1A LTR MaLR 0 374 83 3 1416 329 0 24 0 chr5 109019090 109019131 -43518128 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 3 1416 316 266 162 18 chr5 109019196 109019307 -43517952 + B1F SINE Alu 22 148 -1 3 1416 23 0 0 0 chr5 109019893 109019916 -43517343 + AT_rich Low_complexity Low_complexity 1 23 0 3 1416 297 0 0 0 chr5 109020821 109020854 -43516405 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1416 676 124 17 26 chr5 109020939 109021055 -43516204 - B1_Mur3 SINE Alu 0 149 35 3 1416 272 231 139 41 chr5 109021477 109021707 -43515552 - L1M5 LINE L1 -3106 3040 2767 3 1416 633 157 19 0 chr5 109021731 109021839 -43515420 + B3A SINE B2 1 110 -88 3 1416 351 0 0 0 chr5 109021840 109021879 -43515380 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1416 305 296 216 0 chr5 109021900 109022076 -43515183 - L1M5 LINE L1 -3386 2760 2547 3 1416 904 231 23 28 chr5 109022100 109022314 -43514945 - B3 SINE B2 0 216 4 4 1416 495 302 78 0 chr5 109022338 109022467 -43514792 - ID_B1 SINE B4 -4 220 82 4 1416 219 69 0 0 chr5 109022468 109022497 -43514762 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 4 1416 373 218 23 0 chr5 109022497 109022584 -43514675 - PB1D10 SINE Alu -1 116 28 4 1416 593 217 0 65 chr5 109023299 109023452 -43513807 + B1_Mur1 SINE Alu 7 149 0 4 1416 433 152 12 25 chr5 109023472 109023553 -43513706 + B1_Mur4 SINE Alu 58 137 -13 4 1416 378 0 0 0 chr5 109023553 109023595 -43513664 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 4 1416 684 0 0 0 chr5 109023602 109023678 -43513581 + (GGGAA)n Simple_repeat Simple_repeat 5 80 0 4 1416 427 276 111 7 chr5 109025136 109025271 -43511988 + B1F SINE Alu 1 149 0 4 1416 214 327 0 0 chr5 109026212 109026267 -43510992 - ID4 SINE ID -5 78 24 4 1416 367 287 0 10 chr5 109026291 109026393 -43510866 - PB1D10 SINE Alu -12 105 5 5 1416 690 194 104 7 chr5 109026416 109026551 -43510708 + B1_Mur2 SINE Alu 2 149 0 5 1416 441 289 24 60 chr5 109027142 109027308 -43509951 - RSINE1 SINE B4 -4 161 2 5 1416 216 0 0 0 chr5 109027536 109027560 -43509699 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1416 192 40 0 0 chr5 109028545 109028570 -43508689 + (GAATG)n Simple_repeat Simple_repeat 3 27 0 5 1416 303 247 71 0 chr5 109029618 109029703 -43507556 + B1_Mm SINE Alu 36 126 -21 5 1416 443 248 0 29 chr5 109030153 109030257 -43507002 - RMER30 DNA MER1_type -1 201 101 5 1416 580 204 0 129 chr5 109030543 109030729 -43506530 + MT2A LTR ERVL 365 526 -7 5 1416 269 217 22 67 chr5 109031371 109031386 -43505873 + MTD LTR MaLR 10 20 -387 5 1416 234 0 0 0 chr5 109031386 109031412 -43505847 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5 1416 976 235 64 22 chr5 109031412 109031719 -43505540 + MTD LTR MaLR 20 419 0 5 1416 210 71 0 0 chr5 109031807 109031835 -43505424 + (CAGGA)n Simple_repeat Simple_repeat 2 29 0 6 1416 1391 44 71 0 chr5 109034728 109034910 -43502349 + B2_Mm2 SINE B2 1 195 0 6 1416 261 0 0 0 chr5 109035138 109035167 -43502092 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1416 460 259 178 11 chr5 109036313 109036493 -43500766 + B3 SINE B2 2 211 -5 6 1416 500 312 135 12 chr5 109037122 109037381 -43499878 + MER21B LTR ERV1 149 439 -424 6 1416 301 58 65 37 chr5 109037389 109037496 -43499763 + (TTATA)n Simple_repeat Simple_repeat 3 112 0 6 1416 577 315 66 71 chr5 109037505 109037871 -43499388 + MER21B LTR ERV1 473 836 -27 6 1416 352 205 302 25 chr5 109038052 109038212 -43499047 - B3 SINE B2 -6 210 7 6 1416 1237 258 17 30 chr5 109038958 109039254 -43498005 + B4 SINE B4 1 292 0 6 1416 237 276 54 54 chr5 109040815 109040907 -43496352 - MLT1A LTR MaLR -212 162 71 6 1416 362 203 180 0 chr5 109042151 109042279 -43494980 + L1MB4 LINE L1 6029 6179 -1 6 1416 776 106 32 0 chr5 109042286 109042409 -43494850 + B1_Mus1 SINE Alu 1 127 -21 7 1416 775 207 14 0 chr5 109043029 109043169 -43494090 - B1_Mur1 SINE Alu -6 143 2 7 1416 243 0 0 0 chr5 109043691 109043718 -43493541 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1416 252 0 0 0 chr5 109043718 109043746 -43493513 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7 1416 599 301 13 19 chr5 109044182 109044294 -43492965 - RSINE1 SINE B4 -2 163 55 7 1416 1778 165 58 78 chr5 109044294 109044676 -43492583 + ORR1D1 LTR MaLR 1 374 0 7 1416 599 301 13 19 chr5 109044676 109044719 -43492540 - RSINE1 SINE B4 -111 54 11 7 1416 610 133 88 9 chr5 109044818 109044932 -43492327 + B2_Mm2 SINE B2 2 124 -71 7 1416 513 0 0 0 chr5 109044959 109045016 -43492243 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1416 688 171 329 0 chr5 109045048 109045206 -43492053 - B3 SINE B2 -6 210 1 7 1416 225 0 0 0 chr5 109045233 109045258 -43492001 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1416 1211 35 14 0 chr5 109045391 109045536 -43491723 + B1_Mm SINE Alu 1 147 0 8 1416 189 0 0 0 chr5 109045536 109045557 -43491702 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1416 243 0 0 0 chr5 109046457 109046484 -43490775 + (CACAG)n Simple_repeat Simple_repeat 1 27 0 8 1416 244 293 0 0 chr5 109046790 109046848 -43490411 - PB1D10 SINE Alu -49 68 11 8 1416 946 240 35 15 chr5 109046887 109047090 -43490169 + B3 SINE B2 1 207 -9 8 1416 287 330 31 62 chr5 109047137 109047234 -43490025 - RSINE1 SINE B4 -15 150 57 8 1416 1269 28 0 0 chr5 109047235 109047380 -43489879 + B1_Mm SINE Alu 1 145 -2 8 1416 255 308 15 0 chr5 109047419 109047484 -43489775 - RSINE1 SINE B4 -97 68 3 8 1416 738 281 0 11 chr5 109047493 109047680 -43489579 - B3A SINE B2 -1 197 13 8 1416 435 277 122 8 chr5 109047712 109047843 -43489416 - ID_B1 SINE B4 -40 184 39 8 1416 1602 194 144 5 chr5 109048256 109048624 -43488635 + MTD LTR MaLR 1 419 0 8 1416 231 260 51 13 chr5 109048668 109048746 -43488513 + B4 SINE B4 14 94 -198 9 1416 324 286 46 37 chr5 109048818 109048927 -43488332 + B4A SINE B4 183 292 0 9 1416 31 0 0 0 chr5 109049462 109049493 -43487766 + AT_rich Low_complexity Low_complexity 1 31 0 9 1416 432 0 0 0 chr5 109049584 109049632 -43487627 + (TTA)n Simple_repeat Simple_repeat 2 49 0 9 1416 405 0 0 0 chr5 109049633 109049678 -43487581 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1416 711 264 55 38 chr5 109049766 109050002 -43487257 + Lx9 LINE L1 7162 7401 -243 9 1416 275 281 26 18 chr5 109050436 109050546 -43486713 + B1_Mus2 SINE Alu 5 119 -1 9 1417 624 207 89 0 chr5 109051961 109052096 -43485163 + B1_Mur2 SINE Alu 2 148 -1 9 1417 928 132 102 11 chr5 109054564 109054740 -43482519 + B2_Mm2 SINE B2 2 193 -2 9 1417 552 315 100 26 chr5 109054804 109055114 -43482145 + L1M4 LINE L1 3936 4268 -1878 9 1417 227 279 29 14 chr5 109055115 109055184 -43482075 + GA-rich Low_complexity Low_complexity 1 70 0 9 1417 548 271 21 28 chr5 109055190 109055334 -43481925 + RSINE1 SINE B4 4 146 -19 1 1417 745 235 58 10 chr5 109055404 109055610 -43481649 + B3 SINE B2 1 216 0 1 1417 286 294 0 29 chr5 109056522 109056592 -43480667 - ID4 SINE ID -14 69 2 1 1417 484 272 29 14 chr5 109056593 109056731 -43480528 - B1F SINE Alu 0 149 10 1 1417 189 0 0 0 chr5 109057168 109057189 -43480070 + (TAA)n Simple_repeat Simple_repeat 1 21 0 1 1417 567 226 27 187 chr5 109057192 109057414 -43479845 + B3 SINE B2 15 193 -2 1 1417 1149 55 7 0 chr5 109057544 109057689 -43479570 - B1_Mus2 SINE Alu -1 146 1 1 1417 1155 194 29 0 chr5 109060457 109060663 -43476596 + B3 SINE B2 2 213 -3 1 1417 995 300 213 46 chr5 109060723 109061741 -43475518 + L1M5 LINE L1 2475 3727 -2419 1 1417 1436 66 5 21 chr5 109061741 109061927 -43475332 - B2_Mm1a SINE B2 -9 184 2 1 1417 995 300 245 24 chr5 109061927 109061976 -43475283 + L1M5 LINE L1 3728 3784 -2362 1 1417 1395 70 5 21 chr5 109062017 109062206 -43475053 - B2_Mm2 SINE B2 -7 188 3 1 1417 1191 68 7 0 chr5 109062290 109062437 -43474822 + B1_Mus1 SINE Alu 1 148 0 1 1417 266 347 73 85 chr5 109062545 109062668 -43474591 + MT2B2 LTR ERVL 31 268 -311 1 1417 661 203 17 0 chr5 109062668 109062786 -43474473 + B1_Mur2 SINE Alu 1 120 -29 1 1417 245 132 0 0 chr5 109062795 109062833 -43474426 + L1MC LINE L1 3913 3950 -2196 1 1417 544 233 154 2 chr5 109062852 109063029 -43474230 + B3 SINE B2 1 189 -6 1 1417 1661 36 0 0 chr5 109063029 109063221 -43474038 + B2_Mm1t SINE B2 2 193 0 1 1417 189 0 0 0 chr5 109063230 109063251 -43474008 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1417 329 297 171 0 chr5 109063253 109063478 -43473781 + L1M5 LINE L1 3963 4228 -1918 1 1417 755 233 98 112 chr5 109063526 109063864 -43473395 + L1MC2 LINE L1 5892 6224 -120 1 1417 462 226 0 11 chr5 109064069 109064163 -43473096 - RLTR14 LTR ERV1 0 382 290 1 1417 622 136 169 0 chr5 109064159 109064277 -43472982 + B1_Mus1 SINE Alu 11 148 0 1 1417 286 288 97 116 chr5 109064647 109064834 -43472425 - L1_Mm LINE L1 -846 5300 5122 1 1417 698 232 42 7 chr5 109064834 109064977 -43472282 - B1_Mur2 SINE Alu -1 148 1 1 1417 314 288 97 116 chr5 109064977 109065296 -43471963 - L1_Mm LINE L1 -1025 5121 4775 1 1417 1019 195 43 10 chr5 109065590 109065797 -43471462 - B3 SINE B2 -1 215 2 1 1417 844 132 347 0 chr5 109065893 109066060 -43471199 + URR1B DNA MER1_type 1 225 0 1 1417 248 0 31 0 chr5 109066168 109066200 -43471059 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 1417 260 241 0 0 chr5 109069280 109069334 -43467925 + C-rich Low_complexity Low_complexity 1 54 0 1 1417 498 33 0 0 chr5 109069334 109069394 -43467865 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1417 450 169 44 0 chr5 109069420 109069504 -43467755 - B1_Mus1 SINE Alu -59 89 1 1 1417 302 369 101 0 chr5 109070557 109070706 -43466553 - RSINE1 SINE B4 0 165 2 1 1417 764 250 12 24 chr5 109072442 109072606 -43464653 + RSINE1 SINE B4 4 165 0 1 1417 198 215 85 37 chr5 109082247 109082329 -43454930 + L2b LINE L2 3112 3197 -178 1 1417 440 294 68 5 chr5 109086737 109086956 -43450303 - L1MD1 LINE L1 0 6242 6010 1 1417 231 61 0 0 chr5 109090086 109090119 -43447140 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1417 442 276 9 19 chr5 109090392 109090499 -43446760 + B1_Mur2 SINE Alu 41 146 -3 1 1417 824 219 82 0 chr5 109090503 109090699 -43446560 - B3 SINE B2 0 216 5 1 1417 3323 146 90 34 chr5 109090722 109091366 -43445893 - RMER6A LTR ERVK -76 680 1 1 1417 287 157 67 78 chr5 109091456 109091480 -43445779 - RLTR25B LTR ERVK -499 529 510 1 1417 543 31 0 0 chr5 109091480 109091545 -43445714 + (TCC)n Simple_repeat Simple_repeat 3 67 0 1 1417 287 157 67 78 chr5 109091545 109091610 -43445649 - RLTR25B LTR ERVK -519 509 441 1 1417 415 260 15 82 chr5 109091547 109091681 -43445578 - MT2B LTR ERVL -344 257 133 1 1417 759 59 20 0 chr5 109091610 109091647 -43445612 - B1_Mus1 SINE Alu -43 105 2 1 1417 317 276 115 0 chr5 109091647 109091719 -43445540 + B3 SINE B2 83 164 -52 1 1417 308 281 183 46 chr5 109092235 109092388 -43444871 - MER74A LTR ERVL -384 174 1 1 1417 3642 14 16 2 chr5 109092421 109092846 -43444413 + MT2_Mm LTR ERVL 1 431 -62 1 1417 482 302 42 120 chr5 109092957 109093062 -43444197 + RLTR12B LTR ERVK 9 104 -424 1 1417 1483 72 0 10 chr5 109093062 109093259 -43444000 - B2_Mm2 SINE B2 0 195 1 1 1417 482 297 56 92 chr5 109093259 109093586 -43443673 + RLTR12B LTR ERVK 47 292 -236 1 1417 373 263 73 29 chr5 109094207 109094344 -43442915 - MLT1D LTR MaLR -290 215 73 1 1417 291 316 64 21 chr5 109094481 109094717 -43442542 - L1MEg LINE L1 -4456 1628 1383 1 1417 362 340 9 0 chr5 109094747 109094853 -43442406 - PB1 SINE Alu -20 107 1 1 1417 189 100 39 20 chr5 109094858 109094909 -43442350 + T-rich Low_complexity Low_complexity 5 56 0 1 1417 1460 178 183 31 chr5 109094922 109094940 -43442319 + MTD LTR MaLR 3 19 -400 1 1417 207 0 0 0 chr5 109094940 109094963 -43442296 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1 1417 1460 178 183 31 chr5 109094963 109095304 -43441955 + MTD LTR MaLR 20 417 -2 1 1417 365 256 0 0 chr5 109095489 109095571 -43441688 - ID4_ SINE ID 0 83 2 1 1417 460 257 20 0 chr5 109095576 109095677 -43441582 - PB1D10 SINE Alu -7 110 8 1 1417 244 353 49 0 chr5 109095591 109095693 -43441566 - ID_B1 SINE B4 -48 176 70 1 1417 999 211 60 0 chr5 109095693 109095892 -43441367 - B3 SINE B2 -4 212 2 1 1417 297 0 0 0 chr5 109095935 109095968 -43441291 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1417 273 228 33 50 chr5 109095971 109096031 -43441228 - B4A SINE B4 -20 272 214 1 1417 687 248 0 29 chr5 109096049 109096186 -43441073 - RSINE1 SINE B4 0 165 33 1 1417 699 243 58 29 chr5 109096209 109096383 -43440876 - B4A SINE B4 -62 230 52 1 1417 356 288 133 9 chr5 109096454 109096664 -43440595 - L1MEg LINE L1 -5014 1070 835 1 1417 1352 59 42 36 chr5 109096721 109096914 -43440345 - B2_Mm2 SINE B2 0 195 2 1 1417 912 235 50 0 chr5 109096955 109097155 -43440104 + B3 SINE B2 2 211 -5 1 1417 725 189 68 0 chr5 109097162 109097294 -43439965 + B1_Mus2 SINE Alu 1 141 -6 1 1417 300 53 0 0 chr5 109097297 109097335 -43439924 + (TAA)n Simple_repeat Simple_repeat 3 40 0 1 1417 672 261 0 0 chr5 109097339 109097473 -43439786 + B1_Mur1 SINE Alu 3 136 -13 1 1417 288 0 0 0 chr5 109103475 109103507 -43433752 + (CCCA)n Simple_repeat Simple_repeat 1 32 0 1 1417 366 85 0 0 chr5 109107249 109107308 -43429951 + (T)n Simple_repeat Simple_repeat 1 59 0 1 1417 1184 48 0 13 chr5 109107308 109107457 -43429802 - B1_Mm SINE Alu 0 147 1 1 1417 396 0 0 0 chr5 109110826 109110870 -43426389 + (GGGA)n Simple_repeat Simple_repeat 4 47 0 1 1417 907 270 35 22 chr5 109112643 109112874 -43424385 + B4A SINE B4 1 234 -58 1 1417 802 305 93 22 chr5 109112843 109112879 -43424380 - MTE-int LTR MaLR -145 1435 1400 1 1417 297 0 0 0 chr5 109112879 109112912 -43424347 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1417 802 305 93 22 chr5 109112912 109113187 -43424072 - MTE-int LTR MaLR -181 1399 1102 1 1417 1405 214 130 25 chr5 109113191 109113559 -43423700 - MTC LTR MaLR -8 413 7 1 1417 438 326 60 65 chr5 109113555 109113755 -43423504 - MTE-int LTR MaLR -615 965 767 1 1417 345 352 15 15 chr5 109113826 109113956 -43423303 - ORR1E LTR MaLR -177 182 53 1 1417 284 314 88 0 chr5 109114327 109114429 -43422830 - PB1D10 SINE Alu -3 114 4 1 1417 252 327 92 29 chr5 109114433 109114606 -43422653 - ERVL-E-int LTR ERVL -2813 2854 2671 1 1417 2825 30 0 0 chr5 109115395 109115727 -43421532 + IAPEY3_LTR LTR ERVK 1 332 0 1 1417 1324 199 4 0 chr5 109115901 109116142 -43421117 - MTD LTR MaLR -171 248 7 1 1417 605 286 79 47 chr5 109116918 109117259 -43420000 + RMER10A LTR ERVL 73 424 -18 1 1417 1416 246 45 11 chr5 109117270 109117628 -43419631 - ORR1D2 LTR MaLR 0 370 1 1 1417 1684 238 57 121 chr5 109117628 109117812 -43419447 - ORR1D2-int LTR MaLR 0 1370 1178 1 1417 204 40 0 0 chr5 109117812 109117837 -43419422 + (TATG)n Simple_repeat Simple_repeat 4 28 0 1 1417 1684 238 57 121 chr5 109117837 109118012 -43419247 - ORR1D2-int LTR MaLR -193 1177 1045 1 1417 1167 41 0 7 chr5 109118012 109118160 -43419099 - B1_Mus2 SINE Alu 0 147 1 1 1417 1684 238 57 121 chr5 109118160 109118396 -43418863 - ORR1D2-int LTR MaLR -326 1044 812 1 1417 390 262 97 0 chr5 109118714 109118817 -43418442 - PB1D10 SINE Alu 0 117 5 1 1417 198 0 0 0 chr5 109118963 109118985 -43418274 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1417 206 98 49 0 chr5 109118988 109119029 -43418230 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1 1417 339 195 48 16 chr5 109119229 109119354 -43417905 - L1MEc LINE L1 -4028 2372 2244 1 1417 1378 53 0 35 chr5 109119454 109119491 -43417768 - B2_Mm1a SINE B2 -2 191 162 1 1417 315 0 0 0 chr5 109119491 109119526 -43417733 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1417 1378 53 0 35 chr5 109119526 109119685 -43417574 - B2_Mm1a SINE B2 -32 161 3 1 1417 1488 48 16 0 chr5 109120077 109120266 -43416993 + B2_Mm2 SINE B2 1 192 -3 1 1417 288 209 151 21 chr5 109120356 109120449 -43416810 - PB1D10 SINE Alu -15 105 1 1 1417 291 319 108 16 chr5 109120578 109120772 -43416487 - L1MEc LINE L1 -5617 783 572 1 1417 213 160 0 39 chr5 109121624 109121676 -43415583 + G-rich Low_complexity Low_complexity 2 51 0 1 1417 213 167 0 0 chr5 109122765 109122819 -43414440 + C-rich Low_complexity Low_complexity 1 54 0 1 1417 31 26 0 0 chr5 109123282 109123320 -43413939 + GC_rich Low_complexity Low_complexity 1 38 0 1 1417 42 86 0 0 chr5 109123364 109123469 -43413790 + GC_rich Low_complexity Low_complexity 1 105 0 1 1417 28 29 0 0 chr5 109123679 109123714 -43413545 + GC_rich Low_complexity Low_complexity 1 35 0 1 1417 186 43 0 0 chr5 109135175 109135198 -43402061 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1417 26 50 0 0 chr5 109135743 109135783 -43401476 + AT_rich Low_complexity Low_complexity 1 40 0 1 1417 280 243 42 28 chr5 109136570 109136642 -43400617 + ID4 SINE ID 2 74 -9 1 1417 888 111 7 40 chr5 109139374 109139524 -43397735 - B1_Mus1 SINE Alu 0 148 4 1 1417 23 0 0 0 chr5 109141078 109141101 -43396158 + GC_rich Low_complexity Low_complexity 1 23 0 1 1417 225 0 0 0 chr5 109146404 109146429 -43390830 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1417 936 215 43 39 chr5 109146429 109146637 -43390622 + B4 SINE B4 84 292 0 2 1417 224 204 0 0 chr5 109146640 109146717 -43390542 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 1417 198 0 0 0 chr5 109149368 109149390 -43387869 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1417 387 268 9 151 chr5 109149576 109149716 -43387543 - B4A SINE B4 -6 286 77 2 1417 402 21 0 0 chr5 109149716 109149763 -43387496 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1417 414 296 2 0 chr5 109149763 109149864 -43387395 - PB1D9 SINE Alu -45 104 2 2 1417 2336 218 47 194 chr5 109149873 109150370 -43386889 - RMER1C Other Other -1 1341 858 2 1417 662 147 43 0 chr5 109150370 109150486 -43386773 - B1_Mm SINE Alu -1 146 26 2 1417 2336 218 47 194 chr5 109150486 109150802 -43386457 - RMER1C Other Other -1 857 549 2 1417 743 216 0 0 chr5 109150835 109150974 -43386285 + B1_Mus1 SINE Alu 3 141 -7 2 1417 835 237 97 5 chr5 109150990 109151185 -43386074 - B4A SINE B4 -78 214 2 2 1417 310 290 110 0 chr5 109154977 109155077 -43382182 - PB1D10 SINE Alu -6 111 1 2 1417 930 205 49 0 chr5 109155102 109155307 -43381952 - B3 SINE B2 -1 215 1 2 1417 781 169 7 33 chr5 109156923 109157076 -43380183 + B1_Mur2 SINE Alu 1 149 0 2 1417 421 345 6 17 chr5 109157165 109157339 -43379920 + B3A SINE B2 27 198 0 2 1417 299 330 159 5 chr5 109160276 109160465 -43376794 + MER58A DNA MER1_type 4 221 -3 2 1417 831 286 120 15 chr5 109161217 109161756 -43375503 - L1MEf LINE L1 -3427 2719 2125 2 1417 950 293 43 8 chr5 109161824 109162192 -43375067 + L1MC1 LINE L1 5566 5946 -387 2 1417 421 226 28 28 chr5 109162231 109162340 -43374919 - B4A SINE B4 -181 111 3 2 1417 4191 45 2 6 chr5 109162980 109163513 -43373746 - L1Md_F2 LINE L1 -11 6571 6041 2 1417 289 274 42 25 chr5 109163513 109163633 -43373626 + MYSERV-int LTR ERVK 4682 4803 -1747 2 1417 7433 115 3 16 chr5 109163646 109164203 -43373056 + L1_Mus4 LINE L1 5215 5769 -114 2 1417 3323 28 2 0 chr5 109164203 109164598 -43372661 + MTA_Mm LTR MaLR 1 396 0 2 1417 9149 24 2 0 chr5 109164598 109165694 -43371565 + MTA_Mm-int LTR MaLR 1 1098 0 2 1417 3323 28 2 0 chr5 109165694 109166089 -43371170 + MTA_Mm LTR MaLR 1 396 0 2 1417 7433 80 3 11 chr5 109166089 109166942 -43370317 + L1_Mus4 LINE L1 5770 6614 -22 2 1417 4473 89 55 46 chr5 109166942 109167600 -43369659 + Lx2 LINE L1 6334 6997 0 2 1417 228 67 0 0 chr5 109167634 109167664 -43369595 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1417 3175 142 30 13 chr5 109167664 109168199 -43369060 + L1_Mur2 LINE L1 3812 4355 -1522 2 1417 2955 126 52 0 chr5 109168200 109168684 -43368575 - RLTR28 LTR ERVL 0 524 16 2 1417 1132 128 72 0 chr5 109168703 109168898 -43368361 + L1_Mur2 LINE L1 4353 4561 -1319 2 1417 274 272 31 52 chr5 109169132 109169229 -43368030 + RMER10B LTR ERVL 263 357 -41 2 1417 7533 194 31 26 chr5 109169255 109171175 -43366084 + Lx5 LINE L1 4538 6452 -598 2 1417 189 0 0 0 chr5 109171175 109171196 -43366063 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 2 1417 3808 261 42 72 chr5 109171196 109171479 -43365780 + Lx5 LINE L1 6453 6726 -324 2 1417 1350 221 95 55 chr5 109171517 109171994 -43365265 + RMER4B LTR ERVK 17 560 -25 2 1417 545 318 63 5 chr5 109172860 109173050 -43364209 - MER54B LTR ERVL -109 684 484 2 1417 986 292 39 36 chr5 109173475 109173755 -43363504 - B4A SINE B4 -6 286 6 2 1417 2743 82 99 47 chr5 109174137 109174560 -43362699 + BGLII_A LTR ERVK 1 445 0 2 1417 656 344 64 8 chr5 109177450 109177699 -43359560 + MER54A LTR ERVL 132 394 -507 2 1417 4942 108 106 8 chr5 109179363 109180117 -43357142 - Lx LINE L1 0 6654 5827 2 1417 7731 88 7 4 chr5 109180134 109181752 -43355507 - L1_Mus1 LINE L1 -1 6566 4942 2 1417 733 275 13 14 chr5 109181752 109181948 -43355311 - B3A SINE B2 -17 199 1 2 1417 1221 242 127 15 chr5 109182473 109182812 -43354447 + MTE2b LTR MaLR 1 377 -2 2 177 5252 247 123 32 chr5 109182814 109184260 -43352999 + MTE2b-int LTR MaLR 1 1578 -2 2 1418 1487 255 27 12 chr5 109184263 109184597 -43352662 + MTE2b LTR MaLR 2 340 -39 2 1418 26 0 0 0 chr5 109184902 109184928 -43352331 + AT_rich Low_complexity Low_complexity 1 26 0 2 1418 537 240 0 0 chr5 109185892 109185988 -43351271 + B1_Mus2 SINE Alu 1 96 -51 2 1418 408 321 38 0 chr5 109188280 109188386 -43348873 + B1F1 SINE Alu 1 110 -39 2 1418 189 74 0 0 chr5 109188398 109188425 -43348834 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1418 245 256 11 79 chr5 109189280 109189369 -43347890 + L1MEf LINE L1 1494 1576 -4666 2 1418 26 30 0 0 chr5 109189608 109189641 -43347618 + AT_rich Low_complexity Low_complexity 1 33 0 2 1418 249 280 37 74 chr5 109189676 109189811 -43347448 + L1MEf LINE L1 3178 3307 -2839 2 1418 738 201 43 0 chr5 109189813 109189952 -43347307 + B1_Mur2 SINE Alu 5 149 0 2 1418 209 111 28 0 chr5 109189958 109189994 -43347265 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2 1418 430 72 27 55 chr5 109190117 109190190 -43347069 + ORR1B1-int LTR MaLR 125 195 -1314 2 1418 504 0 0 0 chr5 109190280 109190336 -43346923 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 1418 410 204 136 0 chr5 109190336 109190424 -43346835 - B1_Mur2 SINE Alu -41 108 9 2 1418 239 318 54 23 chr5 109190485 109190614 -43346645 + L1MEf LINE L1 3686 3818 -2328 2 1418 5888 40 1 7 chr5 109190615 109191293 -43345966 - L1Md_T LINE L1 0 6582 5909 2 1418 306 282 38 25 chr5 109191328 109191408 -43345851 + B3A SINE B2 71 151 -47 2 1418 1028 143 120 0 chr5 109192371 109192546 -43344713 + ORR1B1 LTR MaLR 5 200 -194 2 1418 259 146 0 47 chr5 109192563 109192606 -43344653 + tRNA-Phe-TTY tRNA tRNA 36 76 0 2 1418 1262 163 14 1 chr5 109192848 109193090 -43344169 + ORR1B1 LTR MaLR 119 394 0 2 1418 197 0 71 0 chr5 109193369 109193397 -43343862 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 2 1418 1629 223 58 6 chr5 109193446 109193775 -43343484 + MT2A LTR ERVL 81 426 -107 2 1418 8661 27 0 0 chr5 109193777 109194866 -43342393 - L1Md_T LINE L1 0 6582 5494 2 1418 1120 233 29 0 chr5 109196457 109196663 -43340596 + B3 SINE B2 1 212 -4 2 1418 339 180 82 0 chr5 109196861 109196922 -43340337 - B1F SINE Alu -52 97 32 2 1418 432 217 0 0 chr5 109197048 109197131 -43340128 + PB1D9 SINE Alu 37 119 -1 2 1418 2106 159 71 5 chr5 109197330 109197708 -43339551 - MTC LTR MaLR -18 403 1 2 1418 357 62 0 0 chr5 109198030 109198078 -43339181 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 2 1418 445 96 39 52 chr5 109198103 109198180 -43339079 - Lx4B LINE L1 -545 6513 6438 2 1418 2825 132 20 34 chr5 109198183 109198629 -43338630 + Lx4A LINE L1 6619 7058 0 2 1418 398 281 0 0 chr5 109199227 109199316 -43337943 + PB1D10 SINE Alu 6 94 -23 2 1418 240 209 11 44 chr5 109199337 109199427 -43337832 + A-rich Low_complexity Low_complexity 4 90 0 2 1418 693 189 111 22 chr5 109200006 109200141 -43337118 + B1_Mur2 SINE Alu 2 148 -1 2 1418 710 32 11 0 chr5 109200708 109200801 -43336458 + (CA)n Simple_repeat Simple_repeat 1 94 0 2 1418 431 271 90 33 chr5 109200833 109200955 -43336304 - RSINE1 SINE B4 -35 130 2 2 1418 865 169 0 33 chr5 109201130 109201283 -43335976 + B1_Mur3 SINE Alu 2 149 0 2 1418 331 35 33 49 chr5 109201283 109201344 -43335915 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 2 1418 442 212 124 0 chr5 109201632 109201745 -43335514 - B1_Mus1 SINE Alu 0 148 22 2 1418 565 285 0 16 chr5 109201837 109201962 -43335297 + RSINE1 SINE B4 4 126 -39 2 1418 333 0 0 0 chr5 109201968 109202005 -43335254 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1418 252 0 0 0 chr5 109202005 109202032 -43335227 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1418 993 240 68 0 chr5 109202044 109202236 -43335023 + B3 SINE B2 2 206 -10 2 1418 1013 179 168 0 chr5 109202919 109203109 -43334150 + URR1B DNA MER1_type 4 225 0 2 1418 262 300 139 17 chr5 109203257 109203430 -43333829 + L1M5 LINE L1 5621 5814 -359 2 1418 273 279 31 39 chr5 109205092 109205121 -43332138 - PB1 SINE Alu 0 127 103 2 1418 1858 141 130 59 chr5 109205121 109205476 -43331783 + ORR1C2 LTR MaLR 5 384 0 2 1418 273 279 31 39 chr5 109205476 109205573 -43331686 - PB1 SINE Alu -25 102 2 2 1418 21 0 0 0 chr5 109205621 109205642 -43331617 + AT_rich Low_complexity Low_complexity 1 21 0 2 1418 730 200 20 54 chr5 109205658 109205806 -43331453 - B1_Mur4 SINE Alu -7 143 1 2 1418 576 212 40 27 chr5 109205857 109206007 -43331252 - RMER10B LTR ERVL -53 345 194 2 1418 185 283 0 36 chr5 109206755 109206810 -43330449 - MIR SINE MIR -55 153 101 2 1418 5905 47 4 0 chr5 109206899 109207575 -43329684 + L1_Mus1 LINE L1 5888 6566 -1 2 1418 441 36 0 0 chr5 109208260 109208315 -43328944 + (CTACT)n Simple_repeat Simple_repeat 2 56 0 2 1418 537 277 30 39 chr5 109208499 109208702 -43328557 - L3b LINE CR1 -281 201 1 2 1418 321 26 0 0 chr5 109209442 109209480 -43327779 + (TC)n Simple_repeat Simple_repeat 2 39 0 2 1418 1231 57 0 0 chr5 109209482 109209623 -43327636 - B1_Mus1 SINE Alu -6 142 2 2 1418 309 333 67 0 chr5 109209634 109209724 -43327535 - PB1D10 SINE Alu -21 96 1 2 1418 355 298 23 23 chr5 109209646 109209732 -43327527 - ID_B1 SINE B4 -63 161 76 2 1418 488 274 52 0 chr5 109209827 109209980 -43327279 + L1MCa LINE L1 57 217 -6291 2 1418 253 167 41 14 chr5 109210026 109210099 -43327160 + (TA)n Simple_repeat Simple_repeat 1 75 0 2 1418 1405 256 170 49 chr5 109210199 109210522 -43326737 + L1MCa LINE L1 886 1247 -5261 2 1418 654 13 0 0 chr5 109210522 109210597 -43326662 + (GA)n Simple_repeat Simple_repeat 2 76 0 2 1418 1405 256 170 49 chr5 109210597 109211210 -43326049 + L1MCa LINE L1 1248 1935 -4573 2 1418 806 256 101 20 chr5 109211373 109211572 -43325687 + B3 SINE B2 2 216 0 2 1418 427 227 107 25 chr5 109211578 109211700 -43325559 + Lx8 LINE L1 6879 7010 -463 2 1418 2138 228 80 10 chr5 109211670 109212272 -43324987 + Lx6 LINE L1 5716 6605 -855 2 1418 1853 260 73 7 chr5 109212272 109212761 -43324498 + Lx6 LINE L1 6556 7434 -26 2 1418 625 243 323 3 chr5 109212865 109213186 -43324073 + Lx8 LINE L1 6958 7380 -93 2 1418 537 211 0 0 chr5 109213202 109213330 -43323929 + GA-rich Low_complexity Low_complexity 2 129 0 2 1418 368 197 146 49 chr5 109213330 109213474 -43323785 + RLTR15 LTR ERVK 4 161 -198 3 1418 275 292 106 0 chr5 109213959 109214072 -43323187 + L1MC LINE L1 4953 5077 -1069 3 1418 390 307 20 0 chr5 109214084 109214185 -43323074 + MTD LTR MaLR 18 120 -299 3 1418 1571 277 28 9 chr5 109214213 109214640 -43322619 - Lx6 LINE L1 -26 7434 7000 3 1418 455 45 15 0 chr5 109214853 109214919 -43322340 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 3 1418 279 178 0 22 chr5 109214968 109215014 -43322245 - RSINE1 SINE B4 -117 48 4 3 1418 300 203 150 71 chr5 109215269 109215396 -43321863 + L1MDa LINE L1 193 329 -6211 3 1418 853 305 147 18 chr5 109215730 109216531 -43320728 + L1MDa LINE L1 1019 1923 -4710 3 1418 1409 63 5 69 chr5 109216576 109216780 -43320479 + B2_Mm2 SINE B2 1 191 -4 3 1418 4489 140 96 17 chr5 109216803 109217616 -43319643 + RMER12 LTR ERVK 1 877 -445 3 1418 635 108 0 10 chr5 109217617 109217720 -43319539 + (TTCC)n Simple_repeat Simple_repeat 2 103 0 3 1418 497 207 24 32 chr5 109217769 109217894 -43319365 + RMER12 LTR ERVK 1199 1322 0 3 1418 529 196 134 0 chr5 109217939 109218051 -43319208 - B1_Mur2 SINE Alu -19 130 4 3 1418 343 278 250 34 chr5 109218083 109218607 -43318652 + L1MDa LINE L1 2146 2790 -3747 3 1418 326 218 137 8 chr5 109218740 109218882 -43318377 + L1MDa LINE L1 2969 3136 -3401 3 1418 243 301 14 14 chr5 109220188 109220262 -43316997 + LTR16A1 LTR ERVL 372 445 -11 3 1418 565 314 12 6 chr5 109220600 109220770 -43316489 + B3A SINE B2 1 171 -27 3 1418 378 0 0 0 chr5 109220804 109220846 -43316413 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 3 1418 449 302 180 43 chr5 109222176 109222498 -43314761 - L1MEg LINE L1 -5099 985 620 3 1418 1234 115 16 0 chr5 109222579 109222762 -43314497 + B2_Mm2 SINE B2 5 190 -5 3 1418 522 0 0 0 chr5 109224492 109224550 -43312709 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 3 1418 813 336 44 19 chr5 109224693 109225218 -43312041 + Lx9 LINE L1 7089 7626 -18 3 1418 212 143 0 0 chr5 109225318 109225353 -43311906 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1418 578 257 127 33 chr5 109225850 109226063 -43311196 - MTD LTR MaLR -15 404 172 3 1418 21 57 0 0 chr5 109227329 109227364 -43309895 + AT_rich Low_complexity Low_complexity 1 35 0 3 1418 22 0 0 0 chr5 109227987 109228009 -43309250 + AT_rich Low_complexity Low_complexity 1 22 0 3 1418 767 205 6 6 chr5 109228861 109229023 -43308236 - Lx2 LINE L1 -67 6930 6769 3 1418 336 143 0 0 chr5 109229029 109229092 -43308167 + Lx2 LINE L1 6934 6996 -1 3 1418 396 0 0 0 chr5 109229216 109229260 -43307999 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1418 359 372 33 6 chr5 109229280 109229461 -43307798 - B3A SINE B2 -8 190 5 3 1418 814 135 28 14 chr5 109230223 109230366 -43306893 - B1_Mus1 SINE Alu -1 147 3 3 1418 306 0 0 0 chr5 109231780 109231814 -43305445 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1418 1267 113 16 0 chr5 109231886 109232071 -43305188 + B2_Mm2 SINE B2 2 189 -6 3 1418 344 261 83 21 chr5 109232968 109233110 -43304149 + RLTR9E LTR ERVK 164 397 -12 3 1418 614 291 15 15 chr5 109233381 109233583 -43303676 + ETnERV-int LTR ERVK 350 551 -2763 3 1418 4109 174 117 87 chr5 109233778 109234574 -43302685 + RMER16-int LTR ERVK 240 1079 -4327 3 1418 299 57 0 0 chr5 109234574 109234609 -43302650 + L1Md_F2 LINE L1 5552 5586 -297 3 1418 7871 52 4 9 chr5 109234609 109235610 -43301649 + L1Md_F2 LINE L1 5587 6582 0 3 1418 4109 174 117 87 chr5 109235610 109235824 -43301435 + RMER16-int LTR ERVK 1080 1316 -4090 3 1418 259 141 15 15 chr5 109236747 109236812 -43300447 + (TAA)n Simple_repeat Simple_repeat 1 65 0 3 1418 284 229 12 0 chr5 109236983 109237066 -43300193 + (TA)n Simple_repeat Simple_repeat 1 84 0 3 1418 481 193 0 0 chr5 109239108 109239191 -43298068 + L1_Mur2 LINE L1 381 463 -6249 3 1418 1110 66 0 0 chr5 109239637 109239774 -43297485 + B1_Mus1 SINE Alu 2 138 -10 3 1418 393 32 15 31 chr5 109239774 109239839 -43297420 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 3 1418 257 235 0 0 chr5 109240059 109240127 -43297132 + T-rich Low_complexity Low_complexity 1 68 0 3 1418 7576 95 5 0 chr5 109240134 109241758 -43295501 - L1_Mus1 LINE L1 0 6567 4936 3 1418 450 292 23 8 chr5 109242311 109242442 -43294817 + B1_Mur1 SINE Alu 7 139 -10 3 1418 12678 81 3 5 chr5 109242764 109244545 -43292714 + L1_Mm LINE L1 1488 3265 -2618 3 1418 7885 78 8 9 chr5 109244536 109246479 -43290780 - L1Md_Gf LINE L1 -3563 2323 285 3 1418 1555 204 19 9 chr5 109246481 109246802 -43290457 - MERVL_2A-int LTR ERVL -275 5486 5163 3 1418 5649 195 41 11 chr5 109246811 109247997 -43289262 - MERVL_2A-int LTR ERVL -1338 4423 3202 3 1418 2925 226 46 28 chr5 109248013 109248731 -43288528 - Lx5 LINE L1 0 7050 6320 3 1418 2813 160 11 2 chr5 109248752 109249342 -43287917 + Lx5 LINE L1 5469 6068 -982 3 1418 1325 246 71 117 chr5 109249342 109250137 -43287122 + RMER12 LTR ERVK 1 782 -1066 3 1418 566 200 0 121 chr5 109252258 109252423 -43284836 + B1F1 SINE Alu 5 149 0 3 1418 669 250 154 0 chr5 109252618 109252806 -43284453 + ID_B1 SINE B4 8 224 0 3 1418 27 49 0 0 chr5 109253096 109253137 -43284122 + AT_rich Low_complexity Low_complexity 1 41 0 3 1418 830 133 7 0 chr5 109253162 109253312 -43283947 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 3 1418 1780 145 15 21 chr5 109253312 109253650 -43283609 - L1_Mur2 LINE L1 -1007 4870 4535 3 1418 23757 107 5 9 chr5 109253667 109257930 -43279329 - L1_Mus2 LINE L1 0 6566 2321 3 1418 8221 35 6 8 chr5 109257926 109259178 -43278081 - L1Md_F3 LINE L1 -2 6582 5335 3 1418 7070 137 7 32 chr5 109259176 109260836 -43276423 - L1_Mus2 LINE L1 -3550 2333 725 3 1418 418 258 167 6 chr5 109260844 109261012 -43276247 - L1_Mus2 LINE L1 -5813 803 609 3 1418 353 226 37 165 chr5 109261048 109261212 -43276047 - L1VL1 LINE L1 -6060 362 220 3 1418 590 69 23 0 chr5 109261226 109261313 -43275946 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 3 1418 16658 49 3 3 chr5 109261324 109264096 -43273163 - L1Md_F2 LINE L1 -1 6581 3813 3 1418 236 278 73 42 chr5 109264152 109264411 -43272848 + L1MEf LINE L1 1991 2257 -3985 3 1418 250 255 135 9 chr5 109264491 109264602 -43272657 + L1MEf LINE L1 2587 2711 -3435 3 1418 489 321 24 0 chr5 109266380 109266545 -43270714 + B3A SINE B2 3 171 -27 3 1418 255 61 0 0 chr5 109266588 109266621 -43270638 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 3 1418 379 321 140 21 chr5 109267923 109268251 -43269008 - L1MEg LINE L1 -5098 986 620 3 1418 1108 128 12 6 chr5 109268327 109268500 -43268759 + B2_Mm2 SINE B2 1 174 -21 3 1418 318 26 0 0 chr5 109270261 109270300 -43266959 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1418 662 348 21 16 chr5 109270443 109270817 -43266442 + Lx9 LINE L1 7089 7464 -180 3 1418 192 125 0 0 chr5 109270821 109270853 -43266406 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 1418 207 114 0 0 chr5 109271070 109271105 -43266154 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1418 523 305 96 46 chr5 109271600 109271861 -43265398 - MTD LTR MaLR -15 404 131 3 1418 796 186 6 6 chr5 109274622 109274784 -43262475 - Lx2 LINE L1 -67 6930 6769 3 1418 336 143 0 0 chr5 109274790 109274853 -43262406 + Lx2 LINE L1 6934 6996 -1 3 1418 342 0 0 0 chr5 109274981 109275019 -43262240 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1418 313 320 44 17 chr5 109275041 109275222 -43262037 - B3A SINE B2 -8 190 5 3 1418 30 27 0 0 chr5 109275656 109275693 -43261566 + AT_rich Low_complexity Low_complexity 1 37 0 3 1418 234 91 0 0 chr5 109275760 109275793 -43261466 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1418 790 169 20 27 chr5 109276021 109276167 -43261092 - B1_Mus1 SINE Alu -1 147 3 3 1418 531 31 0 0 chr5 109277572 109277637 -43259622 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1418 1192 120 22 0 chr5 109277716 109277899 -43259360 + B2_Mm2 SINE B2 2 188 -7 3 1418 314 266 118 10 chr5 109278772 109278908 -43258351 + RLTRETN_Mm LTR ERVK 164 397 -12 3 1418 447 303 35 15 chr5 109279180 109279378 -43257881 + ETnERV-int LTR ERVK 350 551 -2763 3 1418 4053 171 72 22 chr5 109279584 109280578 -43256681 + RMER16-int LTR ERVK 192 1165 -4972 3 1418 412 215 0 0 chr5 109282879 109282958 -43254301 + L1_Mur2 LINE L1 385 463 -6249 3 1418 249 313 29 29 chr5 109284135 109284237 -43253022 + PB1D10 SINE Alu 5 106 -11 3 1418 423 289 29 7 chr5 109284270 109284406 -43252853 + B1_Mur1 SINE Alu 1 139 -10 3 1418 3199 191 61 27 chr5 109284735 109285583 -43251676 + L1Md_F LINE L1 387 1262 -6466 3 1418 13307 132 6 1 chr5 109285582 109287886 -43249373 + L1Md_F LINE L1 1207 3521 -2362 3 1418 37231 29 5 6 chr5 109287883 109294465 -43242794 - L1Md_A LINE L1 0 6582 8 3 1418 231 200 120 0 chr5 109294512 109294587 -43242672 + L1MDa LINE L1 2155 2238 -4395 3 1418 449 313 73 44 chr5 109294649 109294859 -43242400 + L1MDa LINE L1 2367 2593 -4040 3 1418 945 112 28 14 chr5 109294859 109295004 -43242255 - B1_Mus1 SINE Alu 0 148 2 3 1418 449 313 73 44 chr5 109295004 109295067 -43242192 + L1MDa LINE L1 2594 2648 -3985 3 1418 307 222 57 49 chr5 109296393 109296516 -43240743 - L1M4 LINE L1 -449 5725 5602 3 1418 359 251 160 77 chr5 109296998 109297179 -43240080 + B3A SINE B2 3 198 0 3 1418 379 279 172 74 chr5 109298640 109298965 -43238294 - L1MEg LINE L1 -5108 976 620 3 1418 1188 111 16 11 chr5 109299045 109299228 -43238031 + B2_Mm2 SINE B2 5 188 -7 3 1418 181 253 62 94 chr5 109300157 109300253 -43237006 + L4 LINE RTE 1394 1486 -543 3 1418 469 329 62 17 chr5 109300482 109301011 -43236248 + Lx9 LINE L1 7070 7622 -22 3 1418 904 314 88 6 chr5 109301631 109301996 -43235263 - MTD LTR MaLR -15 404 10 3 1418 205 194 31 31 chr5 109304325 109304389 -43232870 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 3 1418 1225 83 0 0 chr5 109304654 109304822 -43232437 + L1_Mus3 LINE L1 5406 5573 -310 3 1418 4883 48 0 3 chr5 109304817 109305460 -43231799 - L1_Mm LINE L1 -1108 4775 4135 3 1418 6947 102 6 1 chr5 109305484 109306525 -43230734 + L1_Mus3 LINE L1 5588 6633 -5 3 1418 701 181 12 6 chr5 109306684 109306845 -43230414 - Lx2 LINE L1 -67 6930 6769 3 1418 324 159 0 0 chr5 109306851 109306914 -43230345 + Lx2 LINE L1 6934 6996 -1 3 1418 605 123 9 0 chr5 109307027 109307133 -43230126 + (TA)n Simple_repeat Simple_repeat 2 108 0 3 1418 364 384 35 0 chr5 109307141 109307313 -43229946 - B3A SINE B2 -20 178 1 3 1418 6260 87 1 1 chr5 109307625 109309345 -43227914 + L1Md_F LINE L1 366 2085 -3798 3 1418 14329 90 27 12 chr5 109309353 109312154 -43225105 + L1Md_Gf LINE L1 272 3133 -2753 3 1418 3412 37 0 128 chr5 109312154 109312654 -43224605 - RLTR10C LTR ERVK 0 436 1 3 1418 7300 31 2 52 chr5 109312654 109313639 -43223620 - MMERVK10C-int LTR ERVK 0 7581 6646 3 177 8400 31 2 0 chr5 109313625 109314644 -43222615 - MMERVK10C-int LTR ERVK -1771 5810 4790 3 1419 1623 55 0 0 chr5 109314637 109314857 -43222402 - MMERVK10C-int LTR ERVK -3838 3743 3524 3 1419 1853 18 0 4 chr5 109314845 109315072 -43222187 - RLTR10-int LTR ERVK -1110 877 652 4 1419 339 67 0 0 chr5 109315075 109315120 -43222139 - RLTR10-int LTR ERVK -6405 137 93 4 1419 256 141 33 56 chr5 109315120 109315210 -43222049 + CT-rich Low_complexity Low_complexity 2 89 0 4 1419 402 0 0 0 chr5 109315292 109315338 -43221921 - MMERVK10C-int LTR ERVK -7314 267 222 4 1419 245 191 0 0 chr5 109315338 109315380 -43221879 - RLTR27 LTR ERVK -37 272 231 4 1419 1392 50 0 0 chr5 109315380 109315560 -43221699 - MMERVK10C-int LTR ERVK -7401 180 1 4 1419 3467 28 2 128 chr5 109315560 109316059 -43221200 - RLTR10C LTR ERVK 0 436 1 4 1419 18826 49 0 2 chr5 109316059 109318526 -43218733 + L1Md_F2 LINE L1 3125 5586 -297 4 1419 7779 52 14 2 chr5 109318526 109319498 -43217761 + L1Md_F2 LINE L1 5587 6570 -12 4 1419 1091 154 16 11 chr5 109320873 109321063 -43216196 + B2_Mm2 SINE B2 2 192 -3 4 1419 376 290 37 30 chr5 109321942 109322077 -43215182 + RLTR9A LTR ERVK 231 366 -2 4 1419 2986 39 21 3 chr5 109322242 109322626 -43214633 - MTA_Mm LTR MaLR 0 396 6 4 1419 1097 84 0 7 chr5 109322918 109323061 -43214198 + B1_Mus2 SINE Alu 1 142 -5 4 1419 328 118 29 0 chr5 109324253 109324321 -43212938 + (TA)n Simple_repeat Simple_repeat 1 70 0 4 1419 2253 169 69 36 chr5 109324326 109324848 -43212411 - RLTR13D6 LTR ERVK -19 883 345 4 1419 3147 246 21 45 chr5 109324907 109325776 -43211483 - Lx2B LINE L1 -23 6977 6130 4 1419 2832 168 10 19 chr5 109325779 109325933 -43211326 - L1_Mur2 LINE L1 -607 5270 5125 4 1419 207 0 0 0 chr5 109325933 109325956 -43211303 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1419 2832 168 10 19 chr5 109325956 109326397 -43210862 - L1_Mur2 LINE L1 -753 5124 4680 4 1419 7416 48 1 3 chr5 109326491 109327448 -43209811 - L1Md_F2 LINE L1 0 6582 5628 4 1419 1302 216 51 11 chr5 109328024 109328376 -43208883 + L1_Mur2 LINE L1 385 750 -5962 4 1419 2203 158 19 24 chr5 109328378 109329314 -43207945 + L1Md_Gf LINE L1 445 1426 -4460 4 1419 21732 56 2 0 chr5 109329317 109332243 -43205016 + L1Md_Gf LINE L1 2073 5005 -881 4 1419 23 92 0 0 chr5 109332473 109332538 -43204721 + GC_rich Low_complexity Low_complexity 1 65 0 4 1419 22 0 0 0 chr5 109333338 109333360 -43203899 + AT_rich Low_complexity Low_complexity 1 22 0 4 1419 2085 54 0 0 chr5 109333360 109333638 -43203621 + L1Md_Gf LINE L1 4990 5267 -619 4 1419 368 222 0 40 chr5 109333639 109333714 -43203545 + RLTR17 LTR ERVK 562 633 -59 4 1419 1835 82 3 10 chr5 109333720 109334017 -43203242 + L1VL4 LINE L1 679 973 -5329 4 1419 231 136 0 0 chr5 109334041 109334085 -43203174 + MusHAL1 LINE L1 725 768 -2586 4 1419 7697 51 1 0 chr5 109334717 109336372 -43200887 - L1Md_F2 LINE L1 -12 6570 4915 4 1419 4847 102 39 13 chr5 109336620 109338037 -43199222 - L1Md_F LINE L1 -3872 2011 556 4 1419 3977 95 7 1 chr5 109338127 109338791 -43198468 - Lx3_Mus LINE L1 -1035 5974 5311 4 1419 6184 135 10 1 chr5 109338791 109339782 -43197477 + Lx3_Mus LINE L1 6010 7009 0 4 1419 1738 132 0 4 chr5 109339874 109340141 -43197118 + L1VL1 LINE L1 1 266 -6156 4 1419 1399 150 170 0 chr5 109340141 109340441 -43196818 + L1Md_F LINE L1 480 830 -5786 4 1419 5566 91 1 2 chr5 109340435 109341272 -43195987 + L1Md_F LINE L1 3458 4293 -1590 4 1419 4221 89 7 2 chr5 109341272 109341849 -43195410 - RLTR13B1 LTR ERVK 0 893 314 4 1419 13319 143 14 21 chr5 109342100 109343808 -43193451 + L1VL4 LINE L1 217 1923 -1636 4 1419 4817 70 1 18 chr5 109343808 109344464 -43192795 - L1Md_F2 LINE L1 0 6582 5938 4 1419 13319 117 18 24 chr5 109344464 109345839 -43191420 + L1VL4 LINE L1 1924 3277 -282 4 1419 21265 120 7 6 chr5 109345872 109346157 -43191102 - L1_Mm LINE L1 -904 4979 4697 4 1419 2572 82 0 14 chr5 109346157 109346504 -43190755 + ORR1A1 LTR MaLR 1 342 -4 4 1419 21265 120 7 6 chr5 109346504 109349804 -43187455 - L1_Mm LINE L1 -1187 4696 1392 4 1419 1842 213 10 23 chr5 109349804 109350193 -43187066 + RMER12 LTR ERVK 506 889 -433 4 1419 456 67 0 0 chr5 109350200 109350260 -43186999 + (TTCC)n Simple_repeat Simple_repeat 2 61 0 4 1419 935 119 17 6 chr5 109350280 109350457 -43186802 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 1419 711 196 18 167 chr5 109350463 109350684 -43186575 + RMER12 LTR ERVK 1135 1322 0 4 1419 235 227 71 107 chr5 109350684 109350753 -43186506 + MT2B2 LTR ERVL 241 306 -278 4 1419 548 188 125 0 chr5 109350730 109350842 -43186417 - B1_Mur2 SINE Alu -20 129 4 4 1419 306 143 63 0 chr5 109350889 109350952 -43186307 + L1MDa LINE L1 2155 2221 -4412 4 1419 325 304 93 6 chr5 109351041 109351203 -43186056 + L1MDa LINE L1 2383 2558 -4075 4 1419 255 300 121 13 chr5 109351402 109351662 -43185597 + L1MDa LINE L1 2813 3102 -3435 4 1419 3102 135 68 84 chr5 109352685 109353132 -43184127 - RMER17A LTR ERVK -15 736 337 4 1419 816 11 0 0 chr5 109353132 109353225 -43184034 + (GGAGA)n Simple_repeat Simple_repeat 1 93 0 4 1419 3102 144 77 78 chr5 109353225 109353538 -43183721 - RMER17A LTR ERVK -415 336 1 4 1419 268 238 44 96 chr5 109353730 109353786 -43183473 - L1M4 LINE L1 -451 5729 5670 4 1419 1920 34 291 0 chr5 109353786 109354054 -43183205 - ORR1A0 LTR MaLR 0 346 1 4 1419 13228 59 29 11 chr5 109354054 109355815 -43181444 - ORR1A0-int LTR MaLR 0 1792 1 4 1419 2935 38 3 0 chr5 109355815 109356160 -43181099 - ORR1A0 LTR MaLR 0 346 1 4 1419 287 126 18 89 chr5 109356160 109356236 -43181023 - L1M4 LINE L1 -511 5669 5602 4 1419 255 274 48 0 chr5 109356308 109356370 -43180889 + LTR16C LTR ERVL 409 473 -16 4 1419 921 55 16 0 chr5 109356676 109356804 -43180455 - L1Md_F3 LINE L1 -12 6570 6441 4 1419 10856 77 4 4 chr5 109356804 109358687 -43178572 - L1Md_F3 LINE L1 -390 6194 4312 4 1419 16557 133 128 5 chr5 109358685 109364163 -43173096 - L1Md_F2 LINE L1 0 6585 278 4 1419 21752 94 4 6 chr5 109364163 109368071 -43169188 - L1Md_F3 LINE L1 -1559 4324 446 4 1419 307 375 35 14 chr5 109369534 109369902 -43167357 + Lx9 LINE L1 7089 7464 -180 4 1419 309 89 0 0 chr5 109369906 109369951 -43167308 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1419 950 327 67 3 chr5 109370697 109371068 -43166191 - MTD LTR MaLR -15 404 10 4 1419 3166 123 6 16 chr5 109371199 109371746 -43165513 - L1_Mm LINE L1 -412 5471 4931 4 1419 6672 57 9 6 chr5 109371815 109372667 -43164592 + RLTR13A LTR ERVK 1 855 0 4 1419 457 306 24 0 chr5 109373165 109373289 -43163970 + B1_Mur1 SINE Alu 13 139 -10 4 1419 15445 83 2 3 chr5 109373616 109375893 -43161366 + L1Md_F2 LINE L1 1488 3762 -2121 4 1419 1890 68 0 0 chr5 109375891 109376143 -43161116 + L1Md_F2 LINE L1 5335 5586 -297 4 1419 7891 50 16 1 chr5 109376143 109377123 -43160136 + L1Md_F2 LINE L1 5587 6581 -1 4 1419 288 330 0 43 chr5 109377244 109377336 -43159923 + B3 SINE B2 2 89 -127 4 1419 1514 11 0 11 chr5 109377622 109377803 -43159456 + (TCTCCC)n Simple_repeat Simple_repeat 2 180 0 4 1419 662 150 8 0 chr5 109377803 109377923 -43159336 + CT-rich Low_complexity Low_complexity 4 124 0 4 1419 844 199 108 16 chr5 109378204 109378398 -43158861 - RMER13A LTR ERVK -648 212 1 4 1419 1734 181 58 8 chr5 109378403 109378781 -43158478 - MERVL_2A-int LTR ERVL -202 5559 5163 4 1419 5236 203 34 11 chr5 109378789 109379984 -43157275 - MERVL_2A-int LTR ERVL -1337 4424 3202 4 1419 2613 235 48 25 chr5 109380000 109380715 -43156544 - Lx5 LINE L1 0 7050 6320 4 1419 2705 155 11 0 chr5 109380736 109381324 -43155935 + Lx5 LINE L1 5469 6068 -982 4 1419 1291 256 74 113 chr5 109381324 109382097 -43155162 + RMER12 LTR ERVK 1 769 -1079 4 1419 5033 127 5 0 chr5 109382493 109383341 -43153918 + L1_Mus1 LINE L1 2842 3693 -2190 4 1419 4114 97 44 9 chr5 109383342 109384135 -43153124 - RLTR13A3 LTR ERVK 0 855 1 4 1419 14285 106 7 4 chr5 109384135 109384525 -43152734 + L1_Mus1 LINE L1 3689 4078 -1805 4 1419 1967 130 138 28 chr5 109384525 109384953 -43152306 - IAPLTR2_Mm LTR ERVK 0 475 1 4 1419 14285 100 7 2 chr5 109384953 109387427 -43149832 + L1_Mus1 LINE L1 4079 6567 0 4 1419 1938 117 10 0 chr5 109387461 109387759 -43149500 + L1_Mus1 LINE L1 5888 6188 -379 4 1419 682 74 9 0 chr5 109387763 109387871 -43149388 + L1_Mus1 LINE L1 6459 6567 0 4 1419 23 54 0 0 chr5 109387909 109387946 -43149313 + AT_rich Low_complexity Low_complexity 1 37 0 4 1419 6837 14 0 0 chr5 109388377 109389154 -43148105 + L1Md_T LINE L1 4810 5586 -297 4 1419 8526 29 0 0 chr5 109389154 109390149 -43147110 + L1Md_T LINE L1 5587 6581 -1 4 1419 601 164 26 0 chr5 109390649 109390765 -43146494 + L1_Mur2 LINE L1 1280 1398 -4479 4 1419 10800 132 35 2 chr5 109390768 109393356 -43143903 + L1VL4 LINE L1 2 2669 -890 4 1419 2859 167 53 124 chr5 109393657 109394568 -43142691 + L1_Mur2 LINE L1 1383 2228 -3649 4 1419 1988 230 17 2 chr5 109394585 109394994 -43142265 + RLTR17 LTR ERVK 219 633 -59 4 1419 1866 82 14 0 chr5 109395012 109395292 -43141967 + L1VL4 LINE L1 690 973 -5329 4 1419 280 345 56 23 chr5 109395293 109395599 -43141660 + RMER16-int LTR ERVK 4324 4639 -767 4 1419 3929 195 93 18 chr5 109396149 109397083 -43140176 + RLTR19-int LTR ERVK 3399 4402 -1735 4 1419 280 237 73 44 chr5 109397769 109397906 -43139353 + RLTR19-int LTR ERVK 5241 5381 -25 4 1419 4192 89 5 0 chr5 109398419 109399086 -43138173 - Lx3_Mus LINE L1 -1032 5977 5311 4 1419 5742 128 29 10 chr5 109399086 109399458 -43137801 + Lx3_Mus LINE L1 6010 6392 -617 4 1419 4633 72 2 2 chr5 109399458 109400045 -43137214 - LTRIS_Mus LTR ERV1 0 587 1 4 1419 5742 128 29 10 chr5 109400045 109400651 -43136608 + Lx3_Mus LINE L1 6393 7006 -3 4 1419 234 316 52 10 chr5 109401662 109401758 -43135501 - MurSatRep1 Unknown Unknown -1868 269 170 4 1419 4829 166 26 47 chr5 109402476 109404169 -43133090 + L1Md_F LINE L1 291 1886 -1931 4 1419 1929 128 25 3 chr5 109404169 109404490 -43132769 + L1_Mus2 LINE L1 6238 6565 -1 4 1419 466 248 0 190 chr5 109405030 109405209 -43132050 + B1F SINE Alu 5 149 0 4 1419 622 258 70 16 chr5 109405408 109405593 -43131666 + ID_B1 SINE B4 8 202 -22 4 1419 4560 106 10 155 chr5 109406022 109406343 -43130916 - RLTR22_Mur LTR ERVK -1016 832 514 4 1419 567 0 0 0 chr5 109406343 109406406 -43130853 + (TC)n Simple_repeat Simple_repeat 2 64 0 4 1419 1077 103 0 0 chr5 109406406 109406551 -43130708 - B1_Mus2 SINE Alu -2 145 1 4 1419 4560 106 10 155 chr5 109406551 109407201 -43130058 - RLTR22_Mur LTR ERVK -1335 513 2 4 1419 1360 159 4 4 chr5 109407520 109407772 -43129487 - L1_Mur1 LINE L1 -4103 1783 1532 4 1419 1883 175 16 5 chr5 109407769 109408143 -43129116 + L1_Mur1 LINE L1 3288 3665 -2221 4 1419 1906 114 0 14 chr5 109408140 109408434 -43128825 - L1_Mm LINE L1 -902 4981 4692 4 1419 2373 81 27 12 chr5 109408434 109408770 -43128489 + ORR1A1 LTR MaLR 1 341 -5 4 1419 20670 120 7 4 chr5 109408775 109412071 -43125188 - L1_Mm LINE L1 -1187 4696 1392 4 1419 1816 212 30 0 chr5 109412071 109412334 -43124925 + RMER12 LTR ERVK 506 777 -545 4 1419 516 16 0 0 chr5 109412334 109412395 -43124864 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1419 1816 212 30 0 chr5 109412395 109412504 -43124755 + RMER12 LTR ERVK 778 888 -434 4 1419 1112 60 7 0 chr5 109412511 109412660 -43124599 + (TTCC)n Simple_repeat Simple_repeat 4 153 0 4 1419 677 137 8 0 chr5 109412661 109412778 -43124481 + (TTTC)n Simple_repeat Simple_repeat 1 118 0 4 1419 250 232 18 0 chr5 109412778 109412834 -43124425 + CT-rich Low_complexity Low_complexity 2 58 0 4 1419 1150 117 39 0 chr5 109413979 109414158 -43123101 + B2_Mm2 SINE B2 3 188 -7 4 1419 3099 93 7 0 chr5 109415084 109415505 -43121754 - L1_Mus2 LINE L1 -106 5777 5354 4 1419 5383 101 19 5 chr5 109415505 109416294 -43120965 + L1_Mus2 LINE L1 5767 6566 0 4 1419 699 207 198 56 chr5 109416454 109416812 -43120447 - RLTR9E LTR ERVK 0 409 1 4 1419 473 80 25 74 chr5 109416814 109416895 -43120364 - ETnERV2-int LTR ERVK -3 7403 7327 4 1419 712 203 307 47 chr5 109416899 109417199 -43120060 - RLTR13D6 LTR ERVK -371 531 154 4 1419 6634 136 10 8 chr5 109417199 109418182 -43119077 - ETnERV2-int LTR ERVK -200 7206 6222 4 1419 4678 201 66 59 chr5 109418231 109420884 -43116375 - ETnERV2-int LTR ERVK -3321 4085 1565 4 1419 6169 120 12 99 chr5 109420907 109421645 -43115614 - ETnERV2-int LTR ERVK -3714 1130 444 4 1419 1506 43 5 5 chr5 109421645 109421832 -43115427 + B2_Mm1a SINE B2 1 187 -6 4 1419 6169 120 12 99 chr5 109421832 109422330 -43114929 - ETnERV2-int LTR ERVK -4401 443 2 4 1419 805 207 184 36 chr5 109422334 109422670 -43114589 - RLTR9E LTR ERVK -18 391 6 4 1419 850 308 68 23 chr5 109422868 109423396 -43113863 + Lx9 LINE L1 7091 7642 -2 4 1419 813 301 93 23 chr5 109424010 109424353 -43112906 - MTD LTR MaLR -8 411 45 4 1419 23 78 0 0 chr5 109425675 109425726 -43111533 + AT_rich Low_complexity Low_complexity 1 51 0 4 1419 838 191 0 6 chr5 109427198 109427361 -43109898 - Lx2 LINE L1 -67 6930 6769 4 1419 330 159 0 0 chr5 109427367 109427430 -43109829 + Lx2 LINE L1 6934 6996 -1 4 1419 396 0 0 0 chr5 109427558 109427602 -43109657 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1419 519 31 0 0 chr5 109427602 109427666 -43109593 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1419 365 359 8 0 chr5 109427757 109427874 -43109385 - B3A SINE B2 -80 118 1 5 1419 4753 102 4 1 chr5 109428950 109429629 -43107630 + L1_Mm LINE L1 5151 5831 -52 5 1419 570 268 47 16 chr5 109429632 109429761 -43107498 + ETnERV2-int LTR ERVK 7070 7202 -204 5 1419 5626 73 3 1 chr5 109430152 109430893 -43106366 + L1_Mus1 LINE L1 5826 6567 0 5 1419 1146 144 16 0 chr5 109432062 109432249 -43105010 + B2_Mm2 SINE B2 3 192 -3 5 1419 413 283 92 28 chr5 109433127 109433269 -43103990 + RLTR9E LTR ERVK 256 406 -3 5 1419 735 115 22 0 chr5 109434611 109434750 -43102509 + (TA)n Simple_repeat Simple_repeat 1 142 0 5 1419 11452 113 25 6 chr5 109436582 109439057 -43098202 + L1VL4 LINE L1 151 2669 -890 5 1419 302 302 122 38 chr5 109439085 109439298 -43097961 - L1M5 LINE L1 -611 5513 5283 5 1419 2659 189 46 97 chr5 109439356 109440249 -43097010 + L1_Mur2 LINE L1 1373 2219 -3658 5 1419 2273 227 31 4 chr5 109440253 109440736 -43096523 + RLTR17 LTR ERVK 197 692 0 5 1419 1423 218 57 64 chr5 109440736 109441298 -43095961 + RMER3D-int LTR ERVK 1 935 -1907 5 1419 2066 108 30 18 chr5 109441310 109441640 -43095619 - RLTR13D5 LTR ERVK 0 1023 690 5 1419 3768 67 6 0 chr5 109441650 109442130 -43095129 - L1_Mus1 LINE L1 0 6567 6085 5 1419 3214 60 0 0 chr5 109442130 109442533 -43094726 + L1_Mus1 LINE L1 5716 6118 -449 5 1419 4163 88 19 3 chr5 109442536 109443116 -43094143 - RLTR13D5 LTR ERVK -317 706 118 5 1419 6324 133 5 0 chr5 109443118 109444125 -43093134 - L1Md_F LINE L1 -2333 3550 2539 5 1420 7639 119 17 3 chr5 109446097 109446557 -43090702 - L1Md_F LINE L1 -3336 2547 2085 5 1420 234 0 0 0 chr5 109446557 109446583 -43090676 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5 1420 7639 137 14 4 chr5 109446583 109447923 -43089336 - L1Md_F LINE L1 -3799 2084 725 5 1420 355 269 15 7 chr5 109447924 109448059 -43089200 - L1Md_F LINE L1 -5806 810 675 5 1420 243 203 62 86 chr5 109448135 109448216 -43089043 - L1VL1 LINE L1 -6060 362 284 5 1420 3409 169 29 8 chr5 109448338 109448965 -43088294 - RMER12 LTR ERVK -682 640 1 5 1420 1307 89 0 26 chr5 109448987 109449182 -43088077 - B2_Mm2 SINE B2 -4 191 2 5 1420 937 211 11 0 chr5 109449456 109449631 -43087628 + B2_Mm1t SINE B2 5 181 -12 5 1420 462 88 343 29 chr5 109449715 109449820 -43087439 + B2_Mm2 SINE B2 47 184 -11 5 1420 225 281 94 0 chr5 109449822 109449886 -43087373 - MTC LTR MaLR -338 83 14 5 1420 195 42 0 0 chr5 109450044 109450068 -43087191 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1420 835 268 126 9 chr5 109450288 109450605 -43086654 - MTD LTR MaLR -53 366 13 5 1420 22 0 0 0 chr5 109450716 109450738 -43086521 + AT_rich Low_complexity Low_complexity 1 22 0 5 1420 4095 148 42 23 chr5 109450738 109451915 -43085344 + L1VL1 LINE L1 187 1389 -2309 5 1420 4890 179 80 60 chr5 109451915 109452673 -43084586 + ETnERV3-int LTR ERVK 3572 5049 -759 5 1420 3912 64 8 0 chr5 109452673 109453175 -43084084 + L1Md_F2 LINE L1 6076 6581 -1 5 1420 4890 179 78 63 chr5 109453175 109453870 -43083389 + ETnERV3-int LTR ERVK 5050 5779 -29 5 1420 4942 57 16 31 chr5 109453881 109454555 -43082704 + RLTR13C2 LTR ERVK 1 664 -144 5 1420 32200 46 13 17 chr5 109454599 109459106 -43078153 + L1Md_Gf LINE L1 288 4916 -970 5 1420 228 183 46 77 chr5 109459106 109459171 -43078088 - RMER20A LTR ERVK -268 248 186 5 1420 32200 46 13 17 chr5 109459171 109459825 -43077434 + L1Md_Gf LINE L1 4917 5589 -297 5 1420 8280 43 0 2 chr5 109459825 109460823 -43076436 + L1Md_T LINE L1 5587 6582 0 5 1420 587 164 73 0 chr5 109460839 109460949 -43076310 + RLTR13C2 LTR ERVK 691 808 0 5 1420 227 231 45 15 chr5 109460978 109461044 -43076215 + L1M5 LINE L1 2644 2711 -3435 5 1420 257 301 14 14 chr5 109462385 109462459 -43074800 + LTR16A1 LTR ERVL 372 445 -11 5 1420 546 320 18 9 chr5 109462827 109463030 -43074229 + B3A SINE B2 3 198 -18 5 1420 345 47 0 0 chr5 109463036 109463079 -43074180 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 5 1420 457 293 172 43 chr5 109464377 109464702 -43072557 - L1MEg LINE L1 -5098 986 620 5 1420 1029 159 21 0 chr5 109464778 109464967 -43072292 + B2_Mm2 SINE B2 1 193 -2 5 1420 26 30 0 0 chr5 109465413 109465446 -43071813 + AT_rich Low_complexity Low_complexity 1 33 0 5 1420 31654 74 8 5 chr5 109465446 109468726 -43068533 - L1Md_F2 LINE L1 -13 6569 3299 5 1420 1083 102 7 0 chr5 109468726 109468873 -43068386 - B1_Mus1 SINE Alu 0 148 1 5 1420 31654 105 9 13 chr5 109468873 109471742 -43065517 - L1Md_F2 LINE L1 -2585 3298 446 5 1420 392 357 72 9 chr5 109473203 109473633 -43063626 + Lx9 LINE L1 7089 7545 -99 5 1420 966 315 66 3 chr5 109474347 109474680 -43062579 - MTD LTR MaLR -15 404 51 5 1420 691 196 14 21 chr5 109474680 109474821 -43062438 + RLTR46 LTR ERVK 1 140 -180 5 1420 442 286 68 52 chr5 109474865 109475057 -43062202 + RLTR46 LTR ERVK 126 320 0 5 1420 21 0 0 0 chr5 109475275 109475296 -43061963 + AT_rich Low_complexity Low_complexity 1 21 0 5 1420 4095 89 34 0 chr5 109475300 109475893 -43061366 - L1_Mus3 LINE L1 0 6638 6026 5 1420 22 56 0 0 chr5 109477009 109477045 -43060214 + AT_rich Low_complexity Low_complexity 1 36 0 5 1420 625 191 12 1 chr5 109478522 109478658 -43058601 - Lx2 LINE L1 -111 6886 6769 5 1420 279 175 0 0 chr5 109478664 109478727 -43058532 + Lx2 LINE L1 6934 6996 -1 5 1420 225 146 98 0 chr5 109478756 109478788 -43058471 + B1_Mus1 SINE Alu 1 36 -112 5 1420 244 108 0 0 chr5 109478788 109478825 -43058434 + IAPLTR1a_Mm LTR ERVK 1 37 -300 5 1420 9940 19 4 0 chr5 109478825 109480006 -43057253 + IAPEz-int LTR ERVK 5296 6481 0 5 1420 2444 98 59 59 chr5 109480006 109480481 -43056778 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1420 881 81 3 13 chr5 109480483 109480617 -43056642 + B1_Mus1 SINE Alu 4 137 -11 5 1420 216 86 0 0 chr5 109480617 109480652 -43056607 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1420 881 74 0 8 chr5 109480652 109480663 -43056596 + B1_Mus1 SINE Alu 138 148 0 5 1420 436 339 48 0 chr5 109480831 109480996 -43056263 - B3A SINE B2 -25 173 1 5 1420 204 125 0 0 chr5 109481639 109481671 -43055588 + (TA)n Simple_repeat Simple_repeat 2 33 0 5 1420 513 0 0 0 chr5 109481778 109481835 -43055424 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1420 912 166 0 0 chr5 109481837 109481982 -43055277 - B1_Mus1 SINE Alu -1 147 3 5 1420 22 0 0 0 chr5 109483379 109483401 -43053858 + AT_rich Low_complexity Low_complexity 1 22 0 5 1420 219 69 0 0 chr5 109483414 109483443 -43053816 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1420 1245 118 16 0 chr5 109483522 109483708 -43053551 + B2_Mm2 SINE B2 2 190 -5 5 1420 344 229 34 115 chr5 109484612 109484760 -43052499 + RLTR9A2 LTR ERVK 243 378 -5 5 1420 482 342 0 0 chr5 109485030 109485232 -43052027 + ETnERV-int LTR ERVK 350 551 -2763 5 1420 4705 169 71 28 chr5 109485438 109486471 -43050788 + RMER16-int LTR ERVK 240 1316 -4090 5 1420 26 0 0 0 chr5 109486471 109486497 -43050762 + AT_rich Low_complexity Low_complexity 1 26 0 5 1420 961 115 43 0 chr5 109486798 109486937 -43050322 + B1_Mm SINE Alu 2 146 -1 5 1420 289 0 49 0 chr5 109486937 109486978 -43050281 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 5 1420 209 299 0 13 chr5 109487752 109487830 -43049429 + (TA)n Simple_repeat Simple_repeat 1 77 0 5 1420 9126 122 9 92 chr5 109489396 109489574 -43047685 + L1_Mus2 LINE L1 4219 4397 -1486 5 1420 2694 89 168 14 chr5 109489574 109490009 -43047250 + RLTR44C LTR ERVK 1 502 0 5 1420 9126 122 9 92 chr5 109490009 109490649 -43046610 + L1_Mus2 LINE L1 4398 4957 -926 5 1420 1071 104 0 0 chr5 109490649 109490793 -43046466 + B1_Mm SINE Alu 4 147 0 5 1420 9126 94 6 59 chr5 109490793 109491887 -43045372 + L1_Mus2 LINE L1 4958 5981 -585 5 1420 222 37 0 0 chr5 109491888 109491915 -43045344 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 5 1420 247 320 0 0 chr5 109491915 109492015 -43045244 + L1_Mur1 LINE L1 3492 3591 -2295 5 1420 1309 73 5 63 chr5 109492400 109492605 -43044654 + B2_Mm2 SINE B2 1 193 -2 5 1420 1296 182 9 0 chr5 109492632 109492852 -43044407 + RMER12 LTR ERVK 6 227 -1095 5 1420 667 181 135 23 chr5 109492886 109493107 -43044152 + RMER12 LTR ERVK 1130 1322 0 5 1420 231 188 42 0 chr5 109493107 109493150 -43044109 + MT2B2 LTR ERVL 152 196 -388 5 1420 548 195 124 0 chr5 109493152 109493265 -43043994 - B1_Mur2 SINE Alu -19 130 4 5 1420 236 200 120 0 chr5 109493312 109493387 -43043872 + L1MDa LINE L1 2155 2238 -4395 5 1420 350 267 94 8 chr5 109493449 109493566 -43043693 + L1MDa LINE L1 2367 2493 -4140 5 1420 4466 10 0 0 chr5 109493611 109494104 -43043155 + MT2_Mm LTR ERVL 1 493 0 5 1420 45634 16 0 0 chr5 109494104 109499462 -43037797 + MERVL-int LTR ERVL 1 5360 -125 5 1420 369 191 46 35 chr5 109499462 109499549 -43037710 + ORR1A3-int LTR MaLR 553 640 -1323 5 1420 257 216 95 95 chr5 109499531 109499587 -43037672 + ORR1A3-int LTR MaLR 558 613 -1350 5 1420 3546 12 0 0 chr5 109499587 109500000 -43037259 + MT2_Mm LTR ERVL 1 413 -80 5 1420 684 0 0 0 chr5 109500000 109500080 -43037179 + MT2_Mm LTR ERVL 414 493 0 1 1420 907 121 35 21 chr5 109500130 109500274 -43036985 - B1_Mus1 SINE Alu -1 147 2 2 1420 375 222 65 0 chr5 109501663 109501771 -43035488 - L1M3 LINE L1 -455 5725 5611 3 1420 267 312 13 13 chr5 109501858 109501936 -43035323 + LTR16C LTR ERVL 409 486 -3 4 1420 35912 44 1 4 chr5 109502097 109508352 -43028907 - L1Md_T LINE L1 -1 6584 250 5 1420 303 253 141 81 chr5 109508541 109508726 -43028533 + B3A SINE B2 3 198 0 6 1420 507 268 47 8 chr5 109510794 109510922 -43026337 - ETnERV2-int LTR ERVK -204 7202 7070 7 1420 1156 98 15 76 chr5 109511097 109511135 -43026124 + B2_Mm2 SINE B2 3 40 -155 8 1420 4489 69 35 3 chr5 109511135 109511728 -43025531 + L1Md_F2 LINE L1 5959 6570 -12 9 1420 1156 98 15 76 chr5 109511728 109511887 -43025372 + B2_Mm2 SINE B2 41 188 -7 8 1420 544 321 68 16 chr5 109513144 109513689 -43023570 + Lx9 LINE L1 7070 7642 -2 1 1420 945 308 87 3 chr5 109514289 109514621 -43022638 - MTD LTR MaLR -15 404 45 1 1420 205 188 77 15 chr5 109517002 109517067 -43020192 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 1 1420 6851 97 24 1 chr5 109517332 109518534 -43018725 + L1_Mus3 LINE L1 5405 6632 -6 1 1420 315 49 0 0 chr5 109518542 109518583 -43018676 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1420 645 199 6 18 chr5 109518712 109518876 -43018383 - Lx2 LINE L1 -67 6930 6769 1 1420 346 143 0 0 chr5 109518882 109518945 -43018314 + Lx2 LINE L1 6934 6996 -1 1 1420 411 162 0 0 chr5 109519055 109519135 -43018124 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 1420 327 370 49 11 chr5 109519146 109519329 -43017930 - B3A SINE B2 -8 190 1 1 1420 285 29 0 0 chr5 109519832 109519866 -43017393 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1420 23 68 0 0 chr5 109521332 109521376 -43015883 + AT_rich Low_complexity Low_complexity 1 44 0 1 1420 222 37 0 0 chr5 109521455 109521482 -43015777 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1420 1052 170 16 0 chr5 109521560 109521748 -43015511 + B2_Mm2 SINE B2 2 192 -3 2 1420 394 293 36 29 chr5 109522624 109522761 -43014498 + RLTR9A LTR ERVK 231 368 0 2 1420 3160 41 21 0 chr5 109522924 109523312 -43013947 - MTA_Mm LTR MaLR 0 396 1 2 1420 1130 95 0 0 chr5 109523613 109523760 -43013499 + B1_Mus2 SINE Alu 1 147 0 2 1420 342 0 0 0 chr5 109523760 109523798 -43013461 + (A)n Simple_repeat Simple_repeat 1 38 0 2 1420 22 99 0 0 chr5 109523845 109523916 -43013343 + AT_rich Low_complexity Low_complexity 1 71 0 2 1420 1703 10 0 0 chr5 109524113 109524317 -43012942 - L1Md_T LINE L1 -500 6082 5879 2 1420 185 139 23 0 chr5 109525171 109525214 -43012045 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 1420 5612 114 24 6 chr5 109525219 109526086 -43011173 - RLTR13D6 LTR ERVK -19 883 1 2 1420 288 158 52 10 chr5 109526111 109526207 -43011052 + (TA)n Simple_repeat Simple_repeat 1 100 0 3 1420 2062 180 84 5 chr5 109528222 109528812 -43008447 + L1_Mur2 LINE L1 759 1398 -4479 3 1420 5246 151 30 3 chr5 109528815 109529878 -43007381 + L1VL4 LINE L1 2 1086 -2473 3 1420 4293 132 75 1 chr5 109529880 109530465 -43006794 + L1VL4 LINE L1 1815 2433 -1126 3 1420 201 74 0 0 chr5 109530465 109530492 -43006767 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 1420 4293 132 75 1 chr5 109530492 109530702 -43006557 + L1VL4 LINE L1 2434 2668 -891 3 1420 2772 160 47 107 chr5 109531001 109531860 -43005399 + L1_Mur2 LINE L1 1383 2189 -3688 3 1420 2050 231 34 17 chr5 109531860 109532332 -43004927 + RLTR17 LTR ERVK 167 646 -46 3 1420 1798 85 3 0 chr5 109532342 109532625 -43004634 + L1VL4 LINE L1 690 973 -5329 3 1420 764 89 24 8 chr5 109532774 109532899 -43004360 - L1Md_F2 LINE L1 0 6582 6456 3 1420 2375 229 25 8 chr5 109532943 109533538 -43003721 + RLTR19-int LTR ERVK 3799 4403 -1734 3 1420 261 309 0 0 chr5 109533833 109533930 -43003329 + RLTR19-int LTR ERVK 4444 4540 -866 3 1420 1850 95 40 7 chr5 109534298 109534574 -43002685 - RLTR10B2 LTR ERVK 0 365 81 3 1420 36514 60 14 0 chr5 109534574 109539340 -42997919 - MMERVK10C-int LTR ERVK -865 6716 1885 3 1420 373 198 123 0 chr5 109539331 109539412 -42997847 - MMERVK10C-int LTR ERVK -5109 1028 938 3 1420 298 242 118 29 chr5 109539412 109539548 -42997711 - MMERVK10C-int LTR ERVK -5466 671 524 3 1420 1012 147 55 44 chr5 109539567 109539805 -42997454 - RMER16-int LTR ERVK -4881 525 312 4 1420 923 182 10 0 chr5 109539897 109540100 -42997159 - MMERVK10C-int LTR ERVK -6629 952 748 4 1420 708 91 0 0 chr5 109540104 109540203 -42997056 - MMERVK10C-int LTR ERVK -7261 320 222 4 1420 228 255 0 19 chr5 109540203 109540255 -42997004 - RLTR27 LTR ERVK -37 272 222 4 1420 650 76 11 0 chr5 109540255 109540347 -42996912 - MMERVK10C-int LTR ERVK -7488 93 1 4 1420 2196 74 28 175 chr5 109540347 109540775 -42996484 - RLTR10B2 LTR ERVK 0 365 1 4 1420 407 96 0 46 chr5 109541362 109541449 -42995810 - Lx3_Mus LINE L1 -1034 5975 5893 4 1420 2348 42 87 0 chr5 109541449 109541761 -42995498 + ORR1A1 LTR MaLR 8 346 0 4 1420 3714 117 3 17 chr5 109541776 109542361 -42994898 - Lx3_Mus LINE L1 0 5886 5310 4 1420 3141 102 10 4 chr5 109542363 109542847 -42994412 + Lx3_Mus LINE L1 6013 6499 -510 4 1420 4990 76 4 1 chr5 109542848 109543523 -42993736 - RLTR22_Mus LTR ERVK -1131 677 1 4 1420 625 50 0 47 chr5 109543971 109544077 -42993182 - L1Md_F2 LINE L1 -8 6574 6474 4 1420 1328 203 9 98 chr5 109544103 109544551 -42992708 - L1_Mur1 LINE L1 -4104 1782 1375 4 1420 2468 79 19 53 chr5 109544574 109544950 -42992309 - L1_Mus2 LINE L1 -1 6565 6203 4 1420 6310 126 29 0 chr5 109544963 109546068 -42991191 - L1_Mm LINE L1 -2859 3024 1888 4 1420 360 0 0 0 chr5 109546068 109546108 -42991151 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 5 1420 4948 165 24 7 chr5 109546145 109547019 -42990240 + RMER12 LTR ERVK 1 889 -433 5 1420 459 0 0 0 chr5 109547023 109547074 -42990185 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 5 1420 274 278 0 14 chr5 109547101 109547174 -42990085 + RMER12 LTR ERVK 1185 1256 -66 5 1420 477 145 265 8 chr5 109547148 109547280 -42989979 + RMER12 LTR ERVK 1128 1293 -29 5 1420 257 200 117 0 chr5 109547293 109547353 -42989906 + MT2B2 LTR ERVL 221 287 -297 5 1420 543 188 125 0 chr5 109547358 109547470 -42989789 - B1_Mur2 SINE Alu -20 129 4 5 1420 296 328 91 16 chr5 109547371 109547492 -42989767 - B4 SINE B4 -87 205 76 5 1420 306 143 63 0 chr5 109547517 109547580 -42989679 + L1MDa LINE L1 2155 2221 -4412 5 1420 442 288 125 20 chr5 109547662 109547910 -42989349 + L1MDa LINE L1 2375 2648 -3985 5 1420 254 262 115 0 chr5 109548130 109548252 -42989007 + L1MDa LINE L1 2966 3101 -3436 5 1420 3444 41 20 0 chr5 109548734 109549174 -42988085 + L1Md_F2 LINE L1 6093 6541 -41 5 1420 1381 71 0 0 chr5 109549176 109549358 -42987901 - L1_Mus1 LINE L1 -299 6268 6087 5 1420 404 291 8 157 chr5 109549807 109550056 -42987203 + B3A SINE B2 3 214 -2 6 1420 2794 172 54 65 chr5 109550736 109551439 -42985820 + L1_Mur2 LINE L1 1381 2074 -3803 6 1420 225 0 0 0 chr5 109551439 109551464 -42985795 + (CCA)n Simple_repeat Simple_repeat 1 25 0 6 1420 2794 172 54 65 chr5 109551464 109551597 -42985662 + L1_Mur2 LINE L1 2075 2208 -3669 6 1420 37 39 0 0 chr5 109551597 109551648 -42985611 + AT_rich Low_complexity Low_complexity 1 51 0 6 1420 32268 30 0 0 chr5 109551655 109557514 -42979745 + L1Md_T LINE L1 1 5589 -297 6 1420 8991 5 0 3 chr5 109557514 109558535 -42978724 + L1Md_T LINE L1 5590 6585 0 6 1420 2188 246 31 23 chr5 109558535 109559050 -42978209 + RLTR17 LTR ERVK 172 690 -2 6 1420 669 209 97 46 chr5 109559056 109559252 -42978007 + RMER3D-int LTR ERVK 1 206 -2636 6 1420 2063 62 7 0 chr5 109559253 109559529 -42977730 + L1_Mus1 LINE L1 5824 6101 -466 6 1420 4327 82 17 1 chr5 109559529 109560128 -42977131 - RLTR13D5 LTR ERVK -249 784 118 6 1420 13075 119 36 2 chr5 109560130 109561541 -42975718 - L1Md_F LINE L1 -2333 3550 2072 6 1420 270 56 0 0 chr5 109561541 109561577 -42975682 + (TTG)n Simple_repeat Simple_repeat 1 36 0 6 1420 13075 141 25 1 chr5 109561577 109562911 -42974348 - L1Md_F LINE L1 -3812 2071 725 6 1420 380 269 15 7 chr5 109562912 109563047 -42974212 - L1Md_F LINE L1 -5806 810 675 6 1420 259 207 54 118 chr5 109563123 109563216 -42974043 - L1VL1 LINE L1 -6060 362 276 7 1420 3466 169 29 6 chr5 109563306 109563932 -42973327 - RMER12 LTR ERVK -682 640 1 7 1420 928 145 65 32 chr5 109563954 109564139 -42973120 - B2_Mm2 SINE B2 -4 191 1 7 1420 355 329 136 13 chr5 109564183 109564411 -42972848 - L1MDa LINE L1 -4710 1923 1668 7 1420 1010 153 53 0 chr5 109564424 109564594 -42972665 + B2_Mm1t SINE B2 1 179 -14 7 1420 319 78 356 29 chr5 109564679 109564783 -42972476 + B2_Mm2 SINE B2 47 184 -11 7 1420 261 284 26 0 chr5 109564884 109565003 -42972256 - L1_Mur1 LINE L1 -2276 3604 3481 7 1420 222 37 0 0 chr5 109565003 109565030 -42972229 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1420 255 152 0 0 chr5 109565229 109565275 -42971984 + T-rich Low_complexity Low_complexity 1 46 0 7 1420 820 277 126 9 chr5 109565275 109565592 -42971667 - MTD LTR MaLR -53 366 13 7 1420 24 0 0 0 chr5 109565696 109565720 -42971539 + AT_rich Low_complexity Low_complexity 1 24 0 8 1420 518 183 0 161 chr5 109565723 109565866 -42971393 + L1VL1 LINE L1 190 309 -6113 8 1420 2992 119 73 2 chr5 109565883 109566725 -42970534 + L1VL2 LINE L1 386 1306 -2309 8 1420 4399 160 52 27 chr5 109566725 109568167 -42969092 + ETnERV3-int LTR ERVK 3572 5780 -28 8 1420 3803 44 4 82 chr5 109568178 109568727 -42968532 + RLTR13C2 LTR ERVK 1 506 -302 8 1420 254 246 76 8 chr5 109569164 109569283 -42967976 - L1M3 LINE L1 -452 5728 5602 8 1420 532 299 13 7 chr5 109569788 109569943 -42967316 + B3A SINE B2 1 156 -42 8 1420 219 69 0 0 chr5 109569992 109570021 -42967238 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 8 1420 9411 62 6 2 chr5 109570870 109572136 -42965123 + L1Md_F2 LINE L1 4314 5585 -298 8 1420 8011 36 25 1 chr5 109572137 109573110 -42964149 + L1Md_F2 LINE L1 5587 6582 0 8 1420 432 299 160 52 chr5 109573632 109574013 -42963246 - L1MEg LINE L1 -5043 1041 620 8 1420 1059 153 16 0 chr5 109574092 109574275 -42962984 + B2_Mm2 SINE B2 3 188 -7 8 177 36773 8 0 1 chr5 109575014 109581009 -42956250 + L1Md_A LINE L1 1 5586 -297 9 1421 9023 3 0 1 chr5 109581009 109582006 -42955253 + L1Md_A LINE L1 5587 6582 0 9 1421 243 325 23 46 chr5 109582297 109582384 -42954875 + 4.5SRNA scRNA scRNA 2 86 -8 9 1421 925 82 15 7 chr5 109582306 109582441 -42954818 + B1_Mm SINE Alu 12 147 0 9 1421 4120 89 22 48 chr5 109582517 109583120 -42954139 + LTRIS_Mus LTR ERV1 1 587 0 9 1421 485 346 46 5 chr5 109583349 109583764 -42953495 + Lx9 LINE L1 7067 7498 -146 9 1421 1033 299 77 6 chr5 109584500 109584850 -42952409 - MTD LTR MaLR -17 402 28 9 1421 1321 137 7 5 chr5 109587550 109587802 -42949457 + L1_Mm LINE L1 5222 5498 -742 9 1421 613 279 68 10 chr5 109588069 109588275 -42948984 + RLTR45 LTR ERVK 265 482 0 9 1421 1420 269 36 17 chr5 109588276 109588799 -42948460 + RLTR45-int LTR ERVK 2 534 -6710 9 1421 33822 35 0 0 chr5 109589658 109594910 -42942349 + L1Md_T LINE L1 239 5589 -297 9 1421 9013 7 0 0 chr5 109594910 109595906 -42941353 + L1Md_T LINE L1 5590 6585 0 9 1421 622 194 0 0 chr5 109595971 109596095 -42941164 + RLTR45-int LTR ERVK 569 692 -6552 9 1421 463 238 57 0 chr5 109596453 109596575 -42940684 + RLTR45-int LTR ERVK 693 821 -6423 9 1421 307 242 0 118 chr5 109596785 109596921 -42940338 + RLTR45-int LTR ERVK 912 1031 -6213 9 1421 3026 320 55 43 chr5 109597255 109600256 -42937003 + RNERVK23-int LTR ERVK 2671 5707 -2510 9 1421 7880 38 5 2 chr5 109601566 109602515 -42934744 + L1Md_F2 LINE L1 5630 6581 -1 1 1421 297 51 0 0 chr5 109603612 109603651 -42933608 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1421 1137 149 16 0 chr5 109603736 109603924 -42933335 + B2_Mm2 SINE B2 2 192 -3 1 1421 312 261 24 31 chr5 109604794 109604903 -42932356 + RLTR9A2 LTR ERVK 243 407 -30 1 1421 2993 147 9 89 chr5 109604949 109606010 -42931249 + L1Md_F LINE L1 717 1710 -4173 1 1421 19470 109 15 5 chr5 109606006 109610067 -42927192 + L1_Mus1 LINE L1 168 4269 -1614 1 1421 32650 72 1 12 chr5 109610046 109615181 -42922078 + L1Md_F2 LINE L1 418 5589 -297 1 1421 7756 57 9 0 chr5 109615182 109616166 -42921093 + L1Md_F2 LINE L1 5591 6583 -2 1 1421 10494 120 5 2 chr5 109616168 109618491 -42918768 + L1_Mus1 LINE L1 4281 6648 -6 1 1421 1990 104 11 0 chr5 109618499 109618786 -42918473 + L1_Mus1 LINE L1 5899 6188 -379 1 1421 580 138 0 0 chr5 109618790 109618899 -42918360 + L1_Mus1 LINE L1 6459 6567 0 1 1421 342 61 0 0 chr5 109620356 109620405 -42916854 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1421 238 50 50 0 chr5 109620414 109620454 -42916805 + (TA)n Simple_repeat Simple_repeat 1 42 0 1 1421 1887 192 89 6 chr5 109622486 109623056 -42914203 + L1_Mur2 LINE L1 779 1398 -4479 1 1421 10519 130 40 3 chr5 109623059 109625635 -42911624 + L1VL4 LINE L1 2 2669 -890 1 1421 1241 31 24 18 chr5 109625879 109626045 -42911214 - L1Md_F2 LINE L1 0 6582 6416 1 1421 3208 55 0 2 chr5 109626055 109626452 -42910807 - MTA_Mm LTR MaLR 0 396 1 1 1421 3136 82 28 0 chr5 109626457 109626882 -42910377 - L1_Mm LINE L1 0 5883 5447 1 1421 3201 166 61 73 chr5 109626995 109627692 -42909567 + L1_Mur2 LINE L1 1391 2079 -3798 1 1421 615 71 0 0 chr5 109627692 109627777 -42909482 + (CCA)n Simple_repeat Simple_repeat 1 85 0 1 1421 3201 166 61 73 chr5 109627777 109627917 -42909342 + L1_Mur2 LINE L1 2080 2217 -3660 1 1421 2086 239 5 5 chr5 109627917 109628359 -42908900 + RLTR17 LTR ERVK 192 633 -59 1 1421 1927 74 3 14 chr5 109628377 109628664 -42908595 + L1VL4 LINE L1 690 973 -5329 1 1421 1776 86 0 8 chr5 109628816 109629061 -42908198 - L1Md_F2 LINE L1 -13 6569 6327 1 1421 3667 208 92 23 chr5 109629777 109630726 -42906533 + RLTR19-int LTR ERVK 3397 4410 -1727 1 1421 292 309 0 0 chr5 109631012 109631109 -42906150 + RLTR19-int LTR ERVK 4444 4540 -866 1 1421 322 231 71 43 chr5 109631396 109631536 -42905723 + RLTR19-int LTR ERVK 5234 5377 -29 1 1421 2502 103 5 50 chr5 109632064 109632143 -42905116 - Lx3_Mus LINE L1 -1041 5968 5897 1 1421 2641 48 36 0 chr5 109632143 109632477 -42904782 + ORR1A1 LTR MaLR 1 346 0 1 1421 3902 111 4 35 chr5 109632477 109633079 -42904180 - Lx3_Mus LINE L1 -1113 5896 5308 1 1421 1381 91 64 37 chr5 109633109 109633327 -42903932 + IAPEY3-int LTR ERVK 7120 7343 -337 1 1421 1350 202 61 18 chr5 109633339 109633681 -42903578 + RLTR19-int LTR ERVK 6125 6481 0 1 1421 1097 204 122 36 chr5 109633681 109633983 -42903276 + IAPEY3_LTR LTR ERVK 1 388 -2 1 1421 1334 65 6 0 chr5 109633985 109634153 -42903106 + RLTR19-int LTR ERVK 1 169 -7412 1 1421 237 327 0 0 chr5 109634154 109634209 -42903050 + RLTR27 LTR ERVK 221 275 -34 1 1421 16529 85 6 2 chr5 109634257 109635071 -42902188 - L1Md_F LINE L1 -1588 4295 3486 1 1421 297 0 0 0 chr5 109635071 109635104 -42902155 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1 1421 16529 85 6 2 chr5 109635104 109636623 -42900636 - L1Md_F LINE L1 -2398 3485 1953 1 1421 2877 103 24 0 chr5 109636622 109637141 -42900118 - L1Md_F LINE L1 -5564 1160 409 1 1421 610 299 0 71 chr5 109637288 109637500 -42899759 + B3A SINE B2 1 197 -1 1 1421 326 286 133 67 chr5 109639026 109639251 -42898008 - L1MEg LINE L1 -5225 859 620 1 1421 981 144 66 0 chr5 109639329 109639478 -42897781 + B2_Mm2 SINE B2 3 158 -37 1 1421 1113 95 0 0 chr5 109639478 109639625 -42897634 + B1_Mus2 SINE Alu 1 147 0 1 1421 981 144 66 0 chr5 109639625 109639656 -42897603 + B2_Mm2 SINE B2 159 194 -1 1 1421 242 111 93 0 chr5 109639656 109639710 -42897549 + B2_Mm2 SINE B2 132 190 -5 1 1421 3008 100 5 0 chr5 109640663 109641082 -42896177 - L1_Mus2 LINE L1 -106 5777 5357 1 1421 5507 91 6 13 chr5 109641086 109641880 -42895379 + L1_Mus2 LINE L1 5767 6555 -11 1 1421 208 80 77 39 chr5 109641880 109641932 -42895327 + (TATAA)n Simple_repeat Simple_repeat 4 57 0 1 1421 684 319 67 17 chr5 109642294 109642820 -42894439 + Lx9 LINE L1 7091 7642 -2 1 1421 489 371 24 12 chr5 109643522 109643770 -42893489 - MTD LTR MaLR -124 295 45 1 1421 404 345 0 0 chr5 109644198 109644317 -42892942 - MTD LTR MaLR -252 167 49 1 1421 23 78 0 0 chr5 109645637 109645688 -42891571 + AT_rich Low_complexity Low_complexity 1 51 0 1 1421 210 208 50 30 chr5 109646718 109646817 -42890442 + (TA)n Simple_repeat Simple_repeat 1 101 0 1 1421 213 39 0 0 chr5 109647065 109647091 -42890168 + (TA)n Simple_repeat Simple_repeat 1 26 0 1 1421 708 234 0 6 chr5 109647226 109647385 -42889874 - Lx2 LINE L1 -67 6930 6773 1 1421 321 133 17 0 chr5 109647397 109647457 -42889802 + Lx2 LINE L1 6936 6996 -1 1 1421 25 65 0 0 chr5 109647572 109647618 -42889641 + AT_rich Low_complexity Low_complexity 1 46 0 1 1421 378 315 49 16 chr5 109647619 109647803 -42889456 - B3A SINE B2 -8 190 1 1 1421 230 311 67 81 chr5 109649087 109649297 -42887962 - Charlie8 DNA MER1_type -583 1845 1639 1 1421 396 0 0 0 chr5 109649904 109649948 -42887311 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1421 1097 160 21 0 chr5 109650023 109650211 -42887048 + B2_Mm2 SINE B2 2 193 -2 1 1421 23 0 0 0 chr5 109650883 109650906 -42886353 + AT_rich Low_complexity Low_complexity 1 23 0 1 1421 318 273 82 54 chr5 109651095 109651242 -42886017 + RLTR9E LTR ERVK 256 406 -3 1 1421 325 129 14 14 chr5 109652884 109652955 -42884304 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 1421 4927 122 29 9 chr5 109654758 109656232 -42881027 + L1VL4 LINE L1 148 1644 -1915 1 1421 705 211 38 46 chr5 109656235 109656513 -42880746 + RMER3D-int LTR ERVK 210 477 -2365 1 1421 519 164 51 17 chr5 109656636 109656754 -42880505 + RMER3D-int LTR ERVK 489 610 -2232 1 1421 6022 213 58 60 chr5 109656770 109658610 -42878649 + RMER3D-int LTR ERVK 485 2842 0 1 1421 1980 173 28 6 chr5 109658610 109658970 -42878289 + RLTR17 LTR ERVK 1 368 -324 1 1421 4249 146 22 1 chr5 109658994 109659754 -42877505 + L1_Mur2 LINE L1 2259 3034 -2843 1 1421 1629 184 42 3 chr5 109659754 109660065 -42877194 + Lx3C LINE L1 6643 6965 -11 1 1421 365 202 17 0 chr5 109660106 109660198 -42877061 + L1_Mur2 LINE L1 3981 4083 -1800 1 1421 2152 126 133 0 chr5 109660204 109660601 -42876658 - RLTR47_MM LTR ERV1 -82 450 1 1 1421 353 312 29 38 chr5 109660745 109660955 -42876304 - MURVY-int LTR ERV1 -109 7343 7136 1 1421 4486 168 19 15 chr5 109661218 109661552 -42875707 + L1_Mur2 LINE L1 4060 4390 -1487 1 1421 2035 138 12 168 chr5 109661552 109662039 -42875220 - RLTR9F LTR ERVK -4 411 1 1 1421 4486 168 19 15 chr5 109662039 109662568 -42874691 + L1_Mur2 LINE L1 4391 4926 -951 1 1421 6321 131 9 11 chr5 109662563 109663298 -42873961 + L1VL4 LINE L1 190 928 -5374 1 1421 4474 112 94 7 chr5 109663298 109664042 -42873217 + RMER17D2 LTR ERVK 1 809 0 1 1421 6321 75 15 8 chr5 109664042 109664897 -42872362 + L1VL4 LINE L1 929 1790 -1769 1 1421 4368 153 18 1 chr5 109664892 109665892 -42871367 + Lx LINE L1 5276 6289 -365 1 1421 198 143 0 0 chr5 109667213 109667248 -42870011 + (GGAGAA)n Simple_repeat Simple_repeat 5 39 0 1 1421 248 0 0 30 chr5 109667441 109667474 -42869785 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1421 645 162 17 0 chr5 109668428 109668545 -42868714 - Lx2B LINE L1 -1227 5773 5655 1 1421 2545 209 19 8 chr5 109668960 109669486 -42867773 - L1_Mur2 LINE L1 -4 5873 5342 1 1421 3146 117 40 6 chr5 109669497 109669994 -42867265 - RMER17B LTR ERVK -369 589 76 1 1421 681 185 15 0 chr5 109670018 109670153 -42867106 + L1_Mur2 LINE L1 945 1081 -6005 1 1421 539 220 132 6 chr5 109670161 109670335 -42866924 + Lx3C LINE L1 6774 6969 -7 1 1421 291 183 42 21 chr5 109670347 109670442 -42866817 + Lx7 LINE L1 5735 5831 -1865 1 1421 5615 155 20 14 chr5 109670440 109671696 -42865563 + L1_Mur2 LINE L1 1065 2322 -3555 1 1421 7136 119 9 2 chr5 109671677 109672942 -42864317 + MusHAL1 LINE L1 1057 2330 -1584 1 1421 4226 168 57 19 chr5 109672942 109673803 -42863456 + RLTR13D6 LTR ERVK 1 856 -46 1 1421 29808 44 4 4 chr5 109673806 109678161 -42859098 + MusHAL1 LINE L1 2024 5586 -297 1 1421 8432 32 0 0 chr5 109678161 109679157 -42858102 + L1Md_T LINE L1 5587 6582 0 1 1421 29808 149 10 6 chr5 109679157 109680426 -42856833 + MusHAL1 LINE L1 3144 5599 -284 1 1421 691 103 0 0 chr5 109680850 109680947 -42856312 + L1_Mur2 LINE L1 4412 4508 -1369 1 1421 8838 179 8 10 chr5 109680937 109682708 -42854551 + Lx2B LINE L1 3532 5299 -578 1 1421 2609 128 5 0 chr5 109682705 109683089 -42854170 + Lx LINE L1 5855 6240 -414 1 1421 5231 116 17 42 chr5 109683089 109683990 -42853269 + RLTR13A3 LTR ERVK 1 978 0 1 1421 2201 168 15 5 chr5 109683992 109684399 -42852860 + Lx LINE L1 6237 6647 -7 1 1421 2595 79 3 8 chr5 109684456 109684812 -42852447 + MTA_Mm LTR MaLR 1 354 -42 1 1421 967 78 78 0 chr5 109684851 109684993 -42852266 - L1_Mus2 LINE L1 -4 6562 6410 1 1421 475 35 0 0 chr5 109684999 109685056 -42852203 + MTA_Mm LTR MaLR 344 400 0 1 1421 5702 207 46 19 chr5 109685056 109686666 -42850593 + Lx2B LINE L1 5349 6983 -17 1 1421 459 0 0 0 chr5 109686946 109686997 -42850262 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1421 813 253 17 114 chr5 109687119 109687568 -42849691 - Lx7 LINE L1 0 7696 7029 1 1421 431 214 0 0 chr5 109687565 109687654 -42849605 + Lx9 LINE L1 7373 7461 -183 1 1421 216 163 0 0 chr5 109687655 109687698 -42849561 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1421 702 139 57 8 chr5 109687710 109687833 -42849426 + RMER16-int LTR ERVK 3849 3977 -1429 1 1421 1624 261 56 43 chr5 109688074 109688722 -42848537 + RMER16-int LTR ERVK 3980 4635 -771 1 1421 4232 181 89 21 chr5 109689277 109690219 -42847040 + RLTR19-int LTR ERVK 3397 4402 -1735 1 1421 18603 99 8 7 chr5 109690581 109692533 -42844726 - L1_Mus1 LINE L1 -1 6566 4604 1 1421 1171 68 0 0 chr5 109692533 109692679 -42844580 - B1_Mm SINE Alu 0 147 2 1 1421 18603 108 11 13 chr5 109692679 109694226 -42843033 - L1_Mus1 LINE L1 -1280 4603 3069 1 1421 231 285 117 28 chr5 109694290 109694539 -42842720 + L1MDa LINE L1 2375 2645 -3988 1 1421 34366 83 13 15 chr5 109694890 109701055 -42836204 - L1Md_F2 LINE L1 0 6582 450 1 1421 2175 60 7 0 chr5 109701352 109701635 -42835624 - L1Md_F2 LINE L1 0 6582 6298 1 1421 263 224 212 53 chr5 109702555 109702668 -42834591 - L1M3 LINE L1 -447 5733 5603 1 1421 509 301 19 7 chr5 109703170 109703324 -42833935 + B3A SINE B2 1 156 -42 1 1421 22 70 0 0 chr5 109703362 109703405 -42833854 + AT_rich Low_complexity Low_complexity 1 43 0 1 1421 290 83 167 0 chr5 109705141 109705189 -42832070 - U2 snRNA snRNA -132 56 1 1 1421 1220 120 16 0 chr5 109705361 109705544 -42831715 + B2_Mm2 SINE B2 3 188 -7 1 1422 617 349 45 12 chr5 109707395 109707813 -42829446 + Lx9 LINE L1 7067 7498 -146 1 1422 36699 29 2 7 chr5 109708548 109713752 -42823507 + L1Md_T LINE L1 416 5585 -298 1 1422 8202 45 0 0 chr5 109713753 109714749 -42822510 + L1Md_T LINE L1 5587 6582 0 1 1422 528 367 81 9 chr5 109714754 109715076 -42822183 - MTD LTR MaLR -30 389 45 1 1422 36 40 0 0 chr5 109716397 109716447 -42820812 + AT_rich Low_complexity Low_complexity 1 50 0 1 1422 21 36 0 0 chr5 109717104 109717132 -42820127 + AT_rich Low_complexity Low_complexity 1 28 0 1 1422 795 228 0 6 chr5 109717936 109718099 -42819160 - Lx2 LINE L1 -67 6930 6769 1 1422 322 115 16 0 chr5 109718105 109718166 -42819093 + Lx2 LINE L1 6934 6995 -2 2 1422 4630 96 25 0 chr5 109718175 109718883 -42818376 + L1_Mus2 LINE L1 1388 2113 -3770 2 1422 6996 96 4 25 chr5 109718880 109720234 -42817025 + L1_Mus2 LINE L1 5239 6566 0 2 1422 26 0 0 0 chr5 109720234 109720260 -42816999 + AT_rich Low_complexity Low_complexity 1 26 0 2 1422 22 35 0 0 chr5 109720366 109720395 -42816864 + AT_rich Low_complexity Low_complexity 1 29 0 2 1422 258 81 0 0 chr5 109721091 109721128 -42816131 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1422 486 0 0 0 chr5 109722747 109722801 -42814458 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1422 1201 133 16 0 chr5 109722880 109723068 -42814191 + B2_Mm2 SINE B2 2 192 -3 2 1422 389 244 80 73 chr5 109723994 109724131 -42813128 + RLTR9A LTR ERVK 231 368 0 2 1422 485 72 0 0 chr5 109724388 109724457 -42812802 + L1_Mus2 LINE L1 6498 6566 0 2 1422 23 54 0 0 chr5 109725551 109725588 -42811671 + AT_rich Low_complexity Low_complexity 1 37 0 2 1422 714 117 0 0 chr5 109725761 109725872 -42811387 + (TA)n Simple_repeat Simple_repeat 2 112 0 2 1422 2168 197 74 5 chr5 109727933 109728517 -42808742 + L1_Mur2 LINE L1 770 1400 -4477 2 1422 11265 127 20 11 chr5 109728518 109731113 -42806146 + L1VL4 LINE L1 2 2638 -921 2 1422 623 62 0 30 chr5 109731113 109731213 -42806046 + L1Md_F2 LINE L1 6474 6570 -12 2 1422 11265 113 13 15 chr5 109731213 109731268 -42805991 + L1VL4 LINE L1 2639 2669 -890 2 1422 4030 67 2 0 chr5 109731498 109732017 -42805242 - L1_Mus1 LINE L1 0 6567 6048 2 1422 26701 115 11 9 chr5 109732018 109732585 -42804674 - L1Md_F LINE L1 -449 5434 4853 2 1422 3465 23 2 0 chr5 109732585 109732980 -42804279 - MTA_Mm LTR MaLR 0 396 1 2 1422 26701 121 24 18 chr5 109732980 109737440 -42799819 - L1Md_F LINE L1 -1031 4852 380 2 1422 182 33 67 0 chr5 109737528 109737558 -42799701 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 2 1422 286 355 74 47 chr5 109737803 109738166 -42799093 - Lx9 LINE L1 -432 7212 6840 2 1422 371 359 46 59 chr5 109738166 109738403 -42798856 + RLTR25A LTR ERVK 1 234 -869 2 1422 1472 129 70 4 chr5 109738690 109738963 -42798296 - L1_Mur1 LINE L1 -504 5382 5092 2 1422 8284 99 27 6 chr5 109738961 109740247 -42797012 + L1_Mur1 LINE L1 3156 4468 -1418 2 1422 5908 167 38 6 chr5 109740247 109740310 -42796949 + Lx3C LINE L1 5840 5903 -1073 2 1422 731 42 11 0 chr5 109740310 109740405 -42796854 + (GAAA)n Simple_repeat Simple_repeat 4 99 0 2 1422 1963 155 3 3 chr5 109740408 109740719 -42796540 - RLTR10E LTR ERVK 0 311 1 2 1422 5908 167 38 6 chr5 109740719 109741745 -42795514 + Lx3C LINE L1 5904 6965 -11 2 1422 402 21 0 0 chr5 109741746 109741793 -42795466 + (CTA)n Simple_repeat Simple_repeat 1 47 0 2 1422 34125 73 5 1 chr5 109741931 109747303 -42789956 + L1Md_F3 LINE L1 232 5586 -297 2 1422 7820 42 20 0 chr5 109747303 109748267 -42788992 + L1Md_F3 LINE L1 5587 6569 -15 2 1422 1234 69 0 0 chr5 109748272 109748432 -42788827 + B2_Mm1t SINE B2 1 160 -33 2 1422 459 0 0 0 chr5 109748432 109748483 -42788776 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 2 1422 299 0 73 0 chr5 109749319 109749360 -42787899 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1422 1138 335 34 29 chr5 109749681 109750234 -42787025 - Lx9 LINE L1 -802 6842 6287 2 1422 14591 180 61 16 chr5 109750243 109754588 -42782671 - Lx3C LINE L1 -2 6974 2434 2 1422 6951 151 41 18 chr5 109754567 109756677 -42780582 + Lx3B LINE L1 4830 7056 -2 2 1422 6257 151 14 21 chr5 109756695 109756925 -42780334 - Lx3C LINE L1 -3430 2447 2223 2 1422 214 29 57 0 chr5 109756925 109756960 -42780299 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1422 6257 151 14 21 chr5 109756960 109756980 -42780279 - Lx3C LINE L1 -3655 2222 2215 2 1422 254 29 0 28 chr5 109756980 109757016 -42780243 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 1422 6257 151 14 21 chr5 109757016 109757172 -42780087 - Lx3C LINE L1 -3663 2214 2060 2 1422 3370 50 72 5 chr5 109757172 109757446 -42779813 + MT2C_Mm LTR ERVL 1 304 -171 2 1422 441 0 0 0 chr5 109757446 109757495 -42779764 + (TC)n Simple_repeat Simple_repeat 1 49 0 2 1422 3370 50 72 5 chr5 109757495 109757665 -42779594 + MT2C_Mm LTR ERVL 305 475 0 2 1422 419 0 20 0 chr5 109757673 109757724 -42779535 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1422 6257 151 14 21 chr5 109757724 109758504 -42778755 - Lx3C LINE L1 -3822 2055 1260 2 1422 297 0 0 0 chr5 109758504 109758537 -42778722 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1422 6257 141 96 0 chr5 109758537 109758681 -42778578 - Lx3C LINE L1 -5818 1268 1048 2 1422 447 286 55 18 chr5 109760202 109760513 -42776746 - Lx2B LINE L1 -6 6991 6721 2 1422 12802 65 31 22 chr5 109760686 109761985 -42775274 + RLTR22_Mus LTR ERVK 1 1307 -501 2 1422 288 0 0 0 chr5 109761985 109762017 -42775242 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1422 12802 65 31 22 chr5 109762017 109762508 -42774751 + RLTR22_Mus LTR ERVK 1308 1808 0 2 1422 1387 198 58 18 chr5 109763193 109763522 -42773737 + ORR1A1 LTR MaLR 3 344 -2 2 1422 1903 145 81 0 chr5 109763524 109763744 -42773515 + ORR1A1-int LTR MaLR 1 238 -1725 2 1422 558 43 0 0 chr5 109763744 109763813 -42773446 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1422 1903 145 81 0 chr5 109763813 109763924 -42773335 + ORR1A1-int LTR MaLR 239 358 -1605 2 1422 1831 60 22 8 chr5 109764257 109764524 -42772735 - RLTR22_Mur LTR ERVK -1016 832 562 2 1422 462 91 0 0 chr5 109764699 109764765 -42772494 - L1_Mus4 LINE L1 -770 5866 5801 2 1422 7345 87 7 0 chr5 109764781 109765782 -42771477 + L1_Mus3 LINE L1 5623 6630 -8 2 1422 5256 82 11 1 chr5 109765788 109766513 -42770746 - RLTR22_Mus LTR ERVK -1076 732 1 2 1422 1317 219 74 53 chr5 109766513 109766893 -42770366 + ORR1A1-int LTR MaLR 357 744 -1219 2 1422 1106 203 51 64 chr5 109766750 109767083 -42770176 + MT2B LTR ERVL 24 287 -314 2 1422 4272 157 26 1 chr5 109767092 109767830 -42769429 + ORR1A1-int LTR MaLR 851 1606 -357 2 1422 31212 102 41 12 chr5 109769707 109776315 -42760944 - Lx3_Mus LINE L1 0 7009 3 2 1422 516 32 0 0 chr5 109776356 109776418 -42760841 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1422 7814 159 34 8 chr5 109776505 109778903 -42758356 - Lx3C LINE L1 -2 6974 4514 2 1422 29901 74 56 2 chr5 109778901 109784744 -42752515 - L1Md_F2 LINE L1 -4 6578 398 2 1422 14175 159 23 114 chr5 109784742 109788187 -42749072 - Lx3C LINE L1 -1357 4529 1416 2 1422 339 44 0 0 chr5 109788187 109788232 -42749027 - Lx3A LINE L1 -16 6965 6921 2 1422 14175 162 10 39 chr5 109788232 109788886 -42748373 - Lx3C LINE L1 -4471 1415 762 2 1422 3593 81 22 2 chr5 109790001 109790494 -42746765 + L1Md_F2 LINE L1 6080 6582 0 2 1422 460 356 12 6 chr5 109790503 109790667 -42746592 + B3A SINE B2 1 165 -33 2 1422 223 230 11 11 chr5 109791196 109791284 -42745975 + (TA)n Simple_repeat Simple_repeat 2 89 0 2 1422 23 33 0 0 chr5 109792347 109792377 -42744882 + AT_rich Low_complexity Low_complexity 1 30 0 2 1422 753 286 219 12 chr5 109793667 109793992 -42743267 + MTD LTR MaLR 19 406 -13 2 1422 358 324 14 21 chr5 109794710 109794852 -42742407 + Lx7 LINE L1 7014 7154 -542 2 1422 6556 188 66 2 chr5 109795046 109796374 -42740885 - Lx4B LINE L1 -2 7056 5631 2 1422 292 356 114 53 chr5 109796394 109796658 -42740601 - RMER13A LTR ERVK -37 823 544 2 1422 800 271 106 70 chr5 109796771 109797112 -42740147 - RMER13A LTR ERVK -505 355 3 2 1422 1661 168 23 23 chr5 109797118 109797422 -42739837 - L1_Mur2 LINE L1 -250 5627 5324 2 1422 1365 227 58 3 chr5 109797431 109797775 -42739484 - MERVL-int LTR ERVL -255 5506 5144 2 1422 1988 240 112 28 chr5 109797768 109798350 -42738909 - MERVL-int LTR ERVL -956 4529 3899 2 1422 934 232 201 4 chr5 109798487 109798760 -42738499 + MTD LTR MaLR 93 419 0 2 1422 327 247 13 0 chr5 109798760 109798834 -42738425 + Charlie12 DNA MER1_type 913 987 -1886 2 1422 7839 168 33 1 chr5 109798835 109800196 -42737063 - Lx2B LINE L1 -10 6990 5587 2 1422 363 96 0 0 chr5 109800213 109800265 -42736994 + (TTTTC)n Simple_repeat Simple_repeat 4 55 0 2 1422 726 171 1 2 chr5 109800274 109800396 -42736863 + L1_Mus3 LINE L1 6296 6412 -226 2 1422 5665 164 26 8 chr5 109800393 109801467 -42735792 - Lx2B LINE L1 -305 5572 4480 2 1422 8240 215 118 48 chr5 109801462 109803462 -42733797 + Lx2B LINE L1 2123 4356 -2644 2 1422 1019 133 0 0 chr5 109803462 109803620 -42733639 + B2_Mm2 SINE B2 1 158 -37 2 1422 8240 215 118 48 chr5 109803620 109805981 -42731278 + Lx2B LINE L1 4357 6995 -5 2 1422 9477 155 41 34 chr5 109806104 109807924 -42729335 + L1_Mur2 LINE L1 3986 5817 -60 2 1422 23 0 0 0 chr5 109808347 109808370 -42728889 + AT_rich Low_complexity Low_complexity 1 23 0 2 1422 805 242 10 10 chr5 109808370 109808566 -42728693 - Lx4B LINE L1 -8 7050 6855 2 1422 444 278 24 8 chr5 109808647 109808774 -42728485 + Lx9 LINE L1 7065 7193 -451 2 1422 490 196 71 9 chr5 109809033 109809146 -42728113 - URR1B DNA MER1_type 0 225 106 2 1422 1071 109 5 90 chr5 109809186 109809387 -42727872 - L1Md_F2 LINE L1 -1 6581 6398 2 1422 1108 243 45 5 chr5 109809766 109809989 -42727270 - ETnERV2-int LTR ERVK -210 7196 6965 2 1422 22255 107 21 21 chr5 109809989 109814059 -42723200 - L1Md_F LINE L1 -1583 4300 214 2 1422 8397 179 26 7 chr5 109814059 109814998 -42722261 - L1VL4 LINE L1 -904 3008 2052 2 1422 342 0 0 0 chr5 109814998 109815036 -42722223 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1422 8397 184 33 7 chr5 109815036 109816250 -42721009 - L1VL4 LINE L1 -1861 2051 800 2 1422 4280 176 47 2 chr5 109816590 109817435 -42719824 - L1_Mur2 LINE L1 -86 5791 4909 2 1422 7044 145 14 14 chr5 109817424 109819230 -42718029 - Lx LINE L1 0 6654 4853 2 1422 5040 123 7 40 chr5 109819228 109820148 -42717111 - L1VL2 LINE L1 -2513 1102 217 2 1422 11259 157 24 19 chr5 109820147 109822375 -42714884 - L1_Mur2 LINE L1 -954 4923 2686 2 1422 898 158 123 0 chr5 109822375 109822546 -42714713 - ORR1A2 LTR MaLR -135 192 1 2 1422 3392 162 15 8 chr5 109822546 109823378 -42713881 - L1_Mur2 LINE L1 -4360 1517 677 2 1422 22 0 0 0 chr5 109823672 109823694 -42713565 + AT_rich Low_complexity Low_complexity 1 22 0 2 1422 807 144 81 6 chr5 109823735 109823896 -42713363 + L1_Mur3 LINE L1 4060 4232 -1648 2 1422 1704 169 7 0 chr5 109824305 109824578 -42712681 + ORR1A3 LTR MaLR 1 275 -51 2 1422 312 279 26 26 chr5 109826219 109826370 -42710889 - Lx2B LINE L1 -10 6990 6840 2 1422 345 291 126 6 chr5 109826354 109826537 -42710722 - Lx2B LINE L1 -74 6926 6722 2 1422 24 32 0 0 chr5 109826614 109826645 -42710614 + AT_rich Low_complexity Low_complexity 1 31 0 2 1422 31 88 0 0 chr5 109826963 109827043 -42710216 + AT_rich Low_complexity Low_complexity 1 80 0 2 1422 1469 191 30 65 chr5 109827384 109827720 -42709539 + ORR1A3 LTR MaLR 3 326 0 2 1422 6238 175 86 89 chr5 109827720 109827945 -42709314 + ORR1A3-int LTR MaLR 1 242 -1721 2 1422 186 43 0 0 chr5 109827945 109827968 -42709291 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1422 6238 175 86 89 chr5 109827968 109829343 -42707916 + ORR1A3-int LTR MaLR 243 1596 -367 2 1422 36 40 0 0 chr5 109831339 109831389 -42705870 + AT_rich Low_complexity Low_complexity 1 50 0 2 1422 2539 176 42 8 chr5 109831397 109831894 -42705365 - Lx3C LINE L1 -3 6970 6457 2 1422 19571 152 37 11 chr5 109831903 109835759 -42701500 - Lx3C LINE L1 -835 6146 2154 2 1422 296 251 112 69 chr5 109835765 109835929 -42701330 - RLTR13D3 LTR ERVK 0 1114 983 2 1422 26 30 0 0 chr5 109836125 109836158 -42701101 + AT_rich Low_complexity Low_complexity 1 33 0 2 1422 4280 174 25 14 chr5 109836567 109836782 -42700477 - Lx3C LINE L1 -3732 2154 1939 2 1422 378 0 0 0 chr5 109836782 109836824 -42700435 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1422 4280 174 25 14 chr5 109836824 109837323 -42699936 - Lx3C LINE L1 -3948 1938 1435 2 1422 186 71 0 0 chr5 109837323 109837351 -42699908 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2 1422 4280 190 11 5 chr5 109837351 109838011 -42699248 - Lx3C LINE L1 -4452 1434 767 2 1422 243 122 0 0 chr5 109838259 109838308 -42698951 + (T)n Simple_repeat Simple_repeat 1 49 0 2 1423 334 307 133 15 chr5 109838439 109838634 -42698625 - L1M5 LINE L1 -1513 4633 4416 2 1423 363 23 0 0 chr5 109838635 109838679 -42698580 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1423 2928 21 2 173 chr5 109838729 109839197 -42698062 + RLTR10 LTR ERVK 1 388 -2 3 1423 29506 60 4 1 chr5 109839205 109843688 -42693571 - L1Md_F3 LINE L1 -14 6570 2073 3 1423 264 30 0 0 chr5 109843688 109843721 -42693538 + (TTG)n Simple_repeat Simple_repeat 2 34 0 3 1423 29506 65 4 1 chr5 109843721 109843781 -42693478 - L1Md_F3 LINE L1 -3811 2072 2012 3 1423 1442 129 4 13 chr5 109843781 109844009 -42693250 - RLTR13B1 LTR ERVK -667 226 1 3 1423 5713 192 36 18 chr5 109844010 109844684 -42692575 - L1_Mur1 LINE L1 -3285 2601 1907 3 1423 180 0 0 0 chr5 109844684 109844704 -42692555 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1423 5713 192 36 18 chr5 109844704 109845264 -42691995 - L1_Mur1 LINE L1 -3980 1906 1347 3 1423 324 0 0 0 chr5 109845264 109845300 -42691959 + (TTA)n Simple_repeat Simple_repeat 1 36 0 3 1423 1105 95 0 0 chr5 109845302 109845449 -42691810 - B1_Mus1 SINE Alu 0 148 2 3 1423 279 0 0 0 chr5 109845453 109845484 -42691775 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1423 5713 208 190 19 chr5 109845484 109846083 -42691176 - L1_Mur1 LINE L1 -4540 1346 726 3 1423 251 275 53 82 chr5 109846959 109847165 -42690094 + L1M2 LINE L1 3530 3729 -2414 3 1423 237 65 0 0 chr5 109848942 109848973 -42688286 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1423 405 156 15 131 chr5 109849569 109849775 -42687484 + RMER17C LTR ERVK 91 272 -138 3 1423 396 0 0 0 chr5 109849776 109849820 -42687439 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1423 13133 90 6 1 chr5 109850111 109852671 -42684588 - L1_Mus2 LINE L1 0 6566 3994 3 1423 309 250 36 36 chr5 109852681 109852793 -42684466 - Lx4B LINE L1 0 7058 6947 3 1423 536 297 73 15 chr5 109852788 109852993 -42684266 - Lx2B LINE L1 -64 6936 6720 3 1423 21 36 0 0 chr5 109853472 109853500 -42683759 + AT_rich Low_complexity Low_complexity 1 28 0 3 1423 1818 152 9 58 chr5 109853801 109854143 -42683116 + ORR1A3 LTR MaLR 2 326 0 3 1423 7028 170 65 75 chr5 109854143 109855765 -42681494 + ORR1A3-int LTR MaLR 1 1606 -357 3 1423 255 31 0 0 chr5 109856439 109856471 -42680788 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1423 248 175 16 0 chr5 109856471 109856534 -42680725 + (TA)n Simple_repeat Simple_repeat 1 64 0 3 1423 459 0 0 0 chr5 109858161 109858212 -42679047 + (GA)n Simple_repeat Simple_repeat 2 52 0 3 1423 458 346 33 16 chr5 109858673 109858855 -42678404 + B3A SINE B2 3 187 -11 3 1423 29 94 0 0 chr5 109858875 109858960 -42678299 + AT_rich Low_complexity Low_complexity 1 85 0 3 1423 4802 162 39 8 chr5 109858960 109859818 -42677441 - Lx2B LINE L1 -20 6980 6097 3 1423 8073 101 64 7 chr5 109859838 109861130 -42676129 - MusHAL1 LINE L1 -832 1880 515 3 1423 558 235 17 69 chr5 109861130 109861304 -42675955 - RNLTR23 LTR ERVK 0 642 478 3 1423 6195 82 8 8 chr5 109861591 109862839 -42674420 - L1VL2 LINE L1 -2189 1426 179 3 1423 228 189 27 13 chr5 109863202 109863277 -42673982 + (TA)n Simple_repeat Simple_repeat 2 77 0 3 1423 7073 175 10 24 chr5 109863686 109865203 -42672056 - Lx4A LINE L1 -117 6941 5435 3 1423 2722 169 47 10 chr5 109865219 109865732 -42671527 - Lx4A LINE L1 -4 7054 6523 3 1423 7513 146 49 12 chr5 109865733 109866005 -42671254 - Lx4A LINE L1 -2569 3308 3004 3 1423 2078 113 3 16 chr5 109866005 109866321 -42670938 - Lx LINE L1 -1 6653 6342 3 1423 7513 146 49 12 chr5 109866321 109867242 -42670017 - Lx4A LINE L1 -2874 3003 2062 3 1423 423 0 0 0 chr5 109867242 109867289 -42669970 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1423 7513 146 49 12 chr5 109867289 109867558 -42669701 - Lx4A LINE L1 -3816 2061 1792 3 1423 38195 45 1 13 chr5 109867575 109873722 -42663537 - L1Md_T LINE L1 -1 6581 511 3 1423 719 114 23 0 chr5 109873723 109873855 -42663404 - Lx4A LINE L1 -5887 1199 1065 3 1423 324 157 121 0 chr5 109873858 109873941 -42663318 - Lx5 LINE L1 -1220 5830 5738 3 1423 5412 133 29 2 chr5 109873953 109874804 -42662455 - Lx LINE L1 -10 6644 5771 3 1423 3960 85 0 4 chr5 109874794 109875316 -42661943 + L1_Mus2 LINE L1 6047 6566 0 3 1423 14914 203 62 40 chr5 109875327 109876680 -42660579 - L1_Mm LINE L1 -104 5779 4444 3 1423 216 86 0 0 chr5 109876680 109876715 -42660544 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 3 1423 1117 69 7 0 chr5 109876724 109876868 -42660391 - B1_Mm SINE Alu -1 146 2 3 1423 14914 203 62 40 chr5 109876868 109879598 -42657661 - L1_Mm LINE L1 -1440 4443 1598 3 1423 253 309 49 12 chr5 109879595 109879677 -42657582 - L1VL4 LINE L1 -6024 278 194 3 1423 602 267 53 0 chr5 109879698 109879885 -42657374 - Lx3C LINE L1 -2 6974 6778 3 1423 3557 171 6 45 chr5 109879897 109880569 -42656690 - L1_Mur2 LINE L1 -6005 707 62 3 1423 981 310 76 6 chr5 109882592 109882946 -42654313 + MTD LTR MaLR 28 406 -13 3 1423 850 79 0 0 chr5 109883187 109883301 -42653958 + B1_Mus2 SINE Alu 28 141 -6 3 1423 756 0 0 0 chr5 109883302 109883386 -42653873 + (GAA)n Simple_repeat Simple_repeat 3 86 0 3 1423 646 345 60 14 chr5 109883795 109884295 -42652964 - Lx9 LINE L1 -31 7613 7091 3 1423 451 333 12 0 chr5 109884388 109884559 -42652700 - Lx7 LINE L1 -1167 6529 6357 3 1423 349 355 20 20 chr5 109884562 109884763 -42652496 + Lx7 LINE L1 6954 7154 -542 3 1423 1848 245 32 9 chr5 109884763 109885229 -42652030 - MERVL_2A-int LTR ERVL -120 5641 5165 3 1423 1667 196 11 46 chr5 109885247 109885594 -42651665 - MERVL_2A-int LTR ERVL -1134 4627 4293 3 1423 473 235 25 0 chr5 109885677 109885796 -42651463 - MERVL_2A-int LTR ERVL -1599 4162 4041 3 1423 330 310 221 14 chr5 109885799 109886025 -42651234 + MTD LTR MaLR 118 421 0 3 1423 258 304 96 26 chr5 109886328 109886443 -42650816 + ID_B1 SINE B4 94 216 -8 3 1423 7743 108 25 12 chr5 109886787 109887970 -42649289 + L1_Mm LINE L1 4171 5368 -515 3 1423 9042 75 28 28 chr5 109887971 109890162 -42647097 + L1VL1 LINE L1 454 2650 -3233 3 1423 508 228 99 45 chr5 109891029 109891231 -42646028 + RMER3D-int LTR ERVK 630 842 -2000 3 1423 395 205 22 36 chr5 109891264 109891401 -42645858 + RMER3D-int LTR ERVK 1014 1148 -1694 3 1423 297 154 31 71 chr5 109891412 109891510 -42645749 + RMER3D-int LTR ERVK 680 773 -2069 3 1423 496 189 36 9 chr5 109891558 109891670 -42645589 + RMER3D-int LTR ERVK 490 604 -2238 3 1423 346 102 0 0 chr5 109891710 109891759 -42645500 + MYSERV16_I-int LTR ERVK 490 538 -2304 3 1423 1849 212 113 8 chr5 109891758 109892396 -42644863 + MYSERV16_I-int LTR ERVK 1602 2304 -22 3 1423 237 33 0 0 chr5 109892396 109892426 -42644833 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 3 1423 1849 212 113 8 chr5 109892426 109892443 -42644816 + MYSERV16_I-int LTR ERVK 2305 2325 -1 3 1423 1791 227 39 84 chr5 109892443 109892981 -42644278 + RLTR31A_Mm LTR ERVK 1 514 -70 3 1423 492 292 7 21 chr5 109893513 109893653 -42643606 + B1_Mur1 SINE Alu 12 149 0 3 1423 316 326 29 33 chr5 109894537 109894724 -42642535 - MurSatRep1 Unknown Unknown -88 2049 1816 3 1423 360 307 0 0 chr5 109894724 109894861 -42642398 - MMSAT4 Satellite Satellite -1 167 31 3 1423 316 326 29 33 chr5 109894861 109894914 -42642345 - MurSatRep1 Unknown Unknown -88 1815 1747 3 1423 568 281 56 56 chr5 109895035 109895143 -42642116 + MT2A LTR ERVL 107 218 -315 3 1423 192 77 0 0 chr5 109895143 109895169 -42642090 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1423 568 249 29 29 chr5 109895169 109895333 -42641926 + MT2A LTR ERVL 219 426 -107 3 1423 249 33 0 0 chr5 109895373 109895403 -42641856 + (TGG)n Simple_repeat Simple_repeat 3 32 0 3 1423 249 57 0 0 chr5 109895827 109895862 -42641397 + (C)n Simple_repeat Simple_repeat 1 35 0 3 1423 225 94 0 0 chr5 109896987 109897019 -42640240 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1423 225 174 109 0 chr5 109897177 109897223 -42640036 - LTR86C LTR ERVL -235 386 336 3 1423 324 0 0 0 chr5 109897772 109897808 -42639451 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1423 667 137 153 61 chr5 109897811 109897974 -42639285 - RMER4A LTR ERVK -8 458 281 3 1423 1891 140 17 0 chr5 109897974 109898267 -42638992 + ORR1A2 LTR MaLR 30 327 0 3 1423 22 0 0 0 chr5 109899607 109899629 -42637630 + AT_rich Low_complexity Low_complexity 1 22 0 3 1423 3709 142 66 15 chr5 109899852 109900569 -42636690 + RMER6A LTR ERVK 1 753 -3 3 1423 1135 269 75 6 chr5 109900725 109901087 -42636172 - Lx6 LINE L1 -15 7445 7059 3 1423 586 298 11 49 chr5 109901067 109901332 -42635927 - Lx6 LINE L1 -757 6703 6449 3 1423 1820 273 92 35 chr5 109901342 109902002 -42635257 + ORR1E-int LTR MaLR 666 1363 -7 3 1423 26 30 0 0 chr5 109903544 109903577 -42633682 + AT_rich Low_complexity Low_complexity 1 33 0 3 1423 450 323 68 14 chr5 109903577 109903797 -42633462 + ORR1E LTR MaLR 24 255 -104 3 1423 2253 82 32 3 chr5 109903821 109904134 -42633125 + RMER17A LTR ERVK 1 417 -334 3 1423 784 82 16 0 chr5 109904134 109904256 -42633003 + (TC)n Simple_repeat Simple_repeat 2 125 0 3 1423 2253 139 21 8 chr5 109904256 109904586 -42632673 + RMER17A LTR ERVK 418 750 -1 3 1423 370 205 5 45 chr5 109904662 109904766 -42632493 - B1_Mur3 SINE Alu 0 149 47 3 1423 11282 129 28 31 chr5 109904766 109906787 -42630472 + MurSatRep1 Unknown Unknown 122 2137 0 3 1423 274 340 35 9 chr5 109906770 109907037 -42630222 + MurSatRep1 Unknown Unknown 1854 2048 -89 3 1423 381 269 7 7 chr5 109907059 109907201 -42630058 + MMSAT4 Satellite Satellite 27 168 0 3 1423 444 338 24 19 chr5 109907093 109907227 -42630032 + MurSatRep1 Unknown Unknown 1740 1840 -297 3 1423 534 220 7 7 chr5 109907227 109907453 -42629806 + MMSAT4 Satellite Satellite 1 226 -1 3 1423 444 338 24 19 chr5 109907453 109907639 -42629620 + MurSatRep1 Unknown Unknown 1841 1980 -157 3 1423 409 290 0 0 chr5 109907639 109907784 -42629475 + MMSAT4 Satellite Satellite 19 163 -5 3 1423 444 338 24 19 chr5 109907784 109907873 -42629386 + MurSatRep1 Unknown Unknown 1981 2049 -88 3 1423 317 256 57 44 chr5 109907826 109908110 -42629149 + MMSAT4 Satellite Satellite 1 287 -3 3 1423 246 280 16 41 chr5 109908141 109908264 -42628995 + MMSAT4 Satellite Satellite 34 153 -15 3 1423 1153 126 324 16 chr5 109908391 109908641 -42628618 + ORR1A4 LTR MaLR 3 329 0 3 1423 226 219 0 0 chr5 109908645 109908686 -42628573 + (CACG)n Simple_repeat Simple_repeat 4 44 0 3 1423 227 395 0 0 chr5 109909608 109909684 -42627575 - RLTR33 LTR ERVK -85 593 518 3 1423 287 131 27 92 chr5 109909727 109909912 -42627347 + (TTAGGG)n Simple_repeat Simple_repeat 4 176 0 3 1423 338 75 14 43 chr5 109910031 109910101 -42627158 + (GAAA)n Simple_repeat Simple_repeat 4 71 0 3 1423 1736 148 17 0 chr5 109910175 109910465 -42626794 - L1_Mur1 LINE L1 -67 5819 5525 3 1423 205 305 51 72 chr5 109910633 109910771 -42626488 + MIRb SINE MIR 134 268 0 3 1423 2477 44 3 16 chr5 109910980 109911302 -42625957 - L1Md_F2 LINE L1 -1 6581 6264 3 1423 801 229 77 0 chr5 109911376 109911559 -42625700 - B3A SINE B2 -1 197 1 3 1423 1394 258 35 78 chr5 109911896 109912321 -42624938 - MTD LTR MaLR 0 419 13 3 1423 257 211 104 13 chr5 109912471 109912548 -42624711 + LTR48 LTR ERV1 702 785 -2 3 1423 1239 315 110 50 chr5 109912548 109912733 -42624526 + Cheshire DNA MER1_type 1403 1571 -849 3 1423 1117 124 39 0 chr5 109912733 109912911 -42624348 - B2_Mm2 SINE B2 -9 186 2 3 1423 1239 315 110 50 chr5 109912911 109913407 -42623852 + Cheshire DNA MER1_type 1572 2125 -295 3 1423 793 196 7 0 chr5 109913455 109913598 -42623661 + B1_Mur3 SINE Alu 1 144 -5 3 1423 596 323 19 6 chr5 109913624 109913776 -42623483 + RSINE1 SINE B4 1 154 -11 4 1423 405 0 0 0 chr5 109913776 109913821 -42623438 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1423 4869 129 7 5 chr5 109913921 109915069 -42622190 + Lx LINE L1 5216 6693 -357 4 1423 3009 127 15 4 chr5 109915071 109915536 -42621723 + L1_Mus4 LINE L1 6160 6629 -7 4 1423 456 242 0 0 chr5 109916067 109916158 -42621101 + B3A SINE B2 1 91 -107 4 1423 506 309 93 22 chr5 109916337 109916615 -42620644 + Kanga2_a DNA Tc2 172 469 -419 4 1423 1202 61 0 0 chr5 109916862 109917009 -42620250 + B1_Mm SINE Alu 1 147 0 4 1423 201 74 0 0 chr5 109917010 109917037 -42620222 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 4 1423 490 256 174 0 chr5 109917134 109917255 -42620004 - RSINE1 SINE B4 -21 144 3 4 1423 313 325 83 47 chr5 109917336 109917598 -42619661 - MLT1A1 LTR MaLR -2 406 104 4 1423 3279 61 5 0 chr5 109917627 109918039 -42619220 + L1_Mus1 LINE L1 6153 6566 -1 4 1423 1214 103 48 11 chr5 109918075 109918261 -42618998 + B2_Mm2 SINE B2 2 194 -1 4 1423 665 289 55 13 chr5 109918817 109919052 -42618207 - MER2 DNA MER2_type -10 335 91 4 1423 346 311 71 53 chr5 109919124 109919294 -42617965 - ID_B1 SINE B4 -1 223 51 4 1423 2112 142 60 11 chr5 109919692 109920042 -42617217 + ORR1B2 LTR MaLR 1 367 0 4 1423 459 221 70 8 chr5 109920132 109920246 -42617013 - PB1D7 SINE Alu -1 119 3 4 1423 1229 231 24 71 chr5 109920415 109920797 -42616462 - RLTR9A LTR ERVK -2 366 3 4 1423 256 321 124 91 chr5 109920797 109920990 -42616269 + Tigger15a DNA TcMar 284 481 -234 4 1423 3386 28 5 2 chr5 109920990 109921385 -42615874 - MTA_Mm LTR MaLR 0 396 1 4 1423 256 321 124 91 chr5 109921385 109921477 -42615782 + Tigger15a DNA TcMar 482 579 -136 4 1423 210 267 67 0 chr5 109921495 109921555 -42615704 - MIRb SINE MIR -10 258 195 4 1423 271 331 70 16 chr5 109921555 109921684 -42615575 + Tigger15a DNA TcMar 575 710 -5 4 1423 510 294 173 19 chr5 109921826 109922086 -42615173 - Tigger7 DNA MER2_type -63 2428 2129 4 1423 403 340 73 0 chr5 109922085 109922235 -42615024 - Tigger7 DNA MER2_type -2185 306 146 4 1423 230 298 32 11 chr5 109922512 109922607 -42614652 + MIRb SINE MIR 115 211 -57 4 1423 331 346 25 32 chr5 109922748 109922906 -42614353 - RSINE1 SINE B4 -6 159 3 4 1423 508 319 58 51 chr5 109923101 109923375 -42613884 + MLT1A0 LTR MaLR 1 276 -89 4 1423 202 193 35 17 chr5 109924209 109924267 -42612992 + CT-rich Low_complexity Low_complexity 4 62 0 4 1423 451 287 0 0 chr5 109924269 109924377 -42612882 - PB1D10 SINE Alu 0 117 10 4 1423 29 0 0 0 chr5 109924481 109924510 -42612749 + AT_rich Low_complexity Low_complexity 1 29 0 4 1423 1287 102 21 0 chr5 109924686 109924873 -42612386 + B2_Mm2 SINE B2 1 191 -4 4 1423 3183 102 133 24 chr5 109925798 109926309 -42610950 + RMER2 LTR ERV1 1 567 0 4 1423 303 231 0 0 chr5 109927372 109927480 -42609779 + (CA)n Simple_repeat Simple_repeat 1 108 0 4 1423 551 278 66 44 chr5 109927489 109927670 -42609589 - B4A SINE B4 -107 185 1 4 1423 243 0 0 0 chr5 109927899 109927926 -42609333 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 4 1423 495 196 52 8 chr5 109928021 109928155 -42609104 + RLTR19-int LTR ERVK 1197 1336 -4801 4 1423 1885 198 54 76 chr5 109928157 109928738 -42608521 + RLTR19-int LTR ERVK 2461 3007 -3130 4 1423 983 83 45 0 chr5 109928784 109928916 -42608343 + B1_Mus2 SINE Alu 2 139 -8 4 1423 1003 80 20 0 chr5 109928929 109929079 -42608180 + (GAAA)n Simple_repeat Simple_repeat 2 154 0 4 1423 261 179 0 0 chr5 109929205 109929261 -42607998 + RLTR19-int LTR ERVK 8727 8782 -177 4 1423 1653 178 24 3 chr5 109929398 109929692 -42607567 + RLTR20C LTR ERVK 1 300 -234 4 1423 1468 157 13 0 chr5 109929687 109929923 -42607336 - RMER13B LTR ERVK -467 441 203 4 1423 237 139 0 0 chr5 109929927 109929963 -42607296 + RMER13B LTR ERVK 10 45 -863 4 1423 674 214 20 0 chr5 109930013 109930155 -42607104 + RLTR20C LTR ERVK 336 536 -42 4 1423 329 250 92 33 chr5 109930201 109930354 -42606905 - RLTR43A LTR ERVK -2 362 201 4 1423 509 44 0 14 chr5 109931426 109931495 -42605764 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 4 1423 362 308 30 48 chr5 109931681 109931848 -42605411 - RNLTR23 LTR ERVK 0 642 479 4 1423 424 244 150 0 chr5 109932440 109932567 -42604692 - B1_Mus2 SINE Alu -1 146 1 4 1423 405 0 0 0 chr5 109932658 109932703 -42604556 + (TC)n Simple_repeat Simple_repeat 2 46 0 4 1423 288 0 0 0 chr5 109932713 109932745 -42604514 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1423 540 65 0 0 chr5 109932830 109932907 -42604352 + (GA)n Simple_repeat Simple_repeat 1 77 0 4 1423 932 232 74 86 chr5 109933009 109933452 -42603807 - RMER2 LTR ERV1 -26 541 1 4 1423 261 309 0 21 chr5 109933560 109933656 -42603603 + L1_Rod LINE L1 3880 3973 -1874 4 1423 443 247 0 0 chr5 109933749 109933846 -42603413 + B1_Mus1 SINE Alu 28 124 -24 4 1423 265 217 0 0 chr5 109933867 109933927 -42603332 + L1_Rod LINE L1 3987 4046 -1801 4 1423 22 0 0 0 chr5 109934315 109934337 -42602922 + AT_rich Low_complexity Low_complexity 1 22 0 4 1423 248 325 84 0 chr5 109934375 109934458 -42602801 + B3 SINE B2 68 157 -59 4 1423 624 246 0 0 chr5 109934801 109934915 -42602344 - RSINE1 SINE B4 -46 119 6 4 1423 704 203 9 90 chr5 109935010 109935221 -42602038 - B2_Mm2 SINE B2 -1 194 1 4 1423 261 343 35 56 chr5 109935374 109935516 -42601743 - B1_Mur3 SINE Alu -9 140 2 4 1423 27 29 0 0 chr5 109936435 109936469 -42600790 + AT_rich Low_complexity Low_complexity 1 34 0 4 1423 357 328 130 0 chr5 109936691 109936822 -42600437 + RSINE1 SINE B4 7 154 -11 4 1423 342 0 0 0 chr5 109937094 109937132 -42600127 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 4 1423 843 47 6 51 chr5 109937133 109937291 -42599968 + (GAGAA)n Simple_repeat Simple_repeat 5 155 0 4 1423 251 286 23 23 chr5 109937291 109937377 -42599882 + GA-rich Low_complexity Low_complexity 6 91 0 4 1423 274 42 0 5 chr5 109938123 109938165 -42599094 + L1_Mur3 LINE L1 3169 3239 -2907 4 1423 1537 201 29 66 chr5 109938156 109938641 -42598618 - L1_Mur3 LINE L1 -2711 3169 2703 4 1423 401 279 35 28 chr5 109938641 109938785 -42598474 - RLTR23 LTR ERV1 0 430 286 4 1423 4013 177 85 14 chr5 109939121 109939244 -42598015 - L1_Mur3 LINE L1 -3175 2705 2574 4 1423 1367 182 222 45 chr5 109939244 109939640 -42597619 + RMER4A LTR ERVK 1 466 0 4 1423 4013 177 85 14 chr5 109939640 109940465 -42596794 - L1_Mur3 LINE L1 -3307 2573 1689 4 1423 5184 48 34 0 chr5 109940459 109941141 -42596118 + L1_Mus2 LINE L1 5628 6332 -234 4 1423 323 323 11 0 chr5 109941545 109941638 -42595621 + B1_Mur3 SINE Alu 56 149 0 4 1423 378 0 0 0 chr5 109942094 109942136 -42595123 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1423 254 220 113 64 chr5 109942147 109942244 -42595015 + L1_Rod LINE L1 2921 3026 -2821 4 1423 243 61 0 0 chr5 109942244 109942277 -42594982 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 4 1423 254 220 113 64 chr5 109942277 109942383 -42594876 + L1_Rod LINE L1 3027 3134 -2713 4 1423 352 245 18 36 chr5 109942454 109942564 -42594695 - B1_Mur4 SINE Alu -1 149 42 4 1423 503 179 91 33 chr5 109942673 109942794 -42594465 - B2_Mm2 SINE B2 -67 128 1 4 1423 803 221 69 23 chr5 109942811 109943029 -42594230 + RLTR11A LTR ERVK 301 528 0 4 1423 24 77 0 0 chr5 109943149 109943201 -42594058 + AT_rich Low_complexity Low_complexity 1 52 0 4 1423 261 57 0 0 chr5 109943329 109943364 -42593895 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 4 1423 377 302 0 0 chr5 109943751 109943837 -42593422 + B3 SINE B2 93 178 -38 4 1423 225 245 0 0 chr5 109943838 109943891 -42593368 + (CAGG)n Simple_repeat Simple_repeat 2 54 0 4 1423 216 86 0 0 chr5 109943893 109943928 -42593331 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1423 2667 171 76 85 chr5 109943988 109944590 -42592669 - RLTR33 LTR ERVK -81 597 1 4 1423 1234 48 0 0 chr5 109944771 109944916 -42592343 - B1_Mm SINE Alu -1 146 2 4 1423 1831 276 141 62 chr5 109945854 109946303 -42590956 - RMER19B LTR ERVK 0 902 398 4 1423 396 0 0 0 chr5 109946303 109946347 -42590912 + (TTGG)n Simple_repeat Simple_repeat 4 47 0 4 1423 1831 276 141 62 chr5 109946347 109946422 -42590837 - RMER19B LTR ERVK -505 397 329 4 1423 1233 54 0 0 chr5 109946422 109946569 -42590690 - B1_Mm SINE Alu 0 147 1 4 1423 1831 276 131 50 chr5 109946569 109946898 -42590361 - RMER19B LTR ERVK -574 328 43 4 1423 963 281 53 39 chr5 109947069 109947425 -42589834 + RodERV21-int LTR ERV1 728 1088 -3903 4 1423 1648 273 35 47 chr5 109947504 109948019 -42589240 + RodERV21-int LTR ERV1 1107 1615 -3376 4 1423 2024 250 92 26 chr5 109948018 109948564 -42588695 + RodERV21-int LTR ERV1 2137 2718 -2273 4 1423 404 330 52 22 chr5 109948640 109948869 -42588390 + RodERV21-int LTR ERV1 3839 4074 -3017 4 1423 267 203 0 48 chr5 109950351 109950413 -42586846 + RodERV21-int LTR ERV1 4891 4949 -2657 4 1423 875 334 66 70 chr5 109950976 109951674 -42585585 + RodERV21-int LTR ERV1 3060 3754 -1237 4 1423 300 276 26 0 chr5 109951667 109951743 -42585516 + RodERV21-int LTR ERV1 4135 4212 -779 4 1423 1113 288 25 28 chr5 109951883 109952280 -42584979 + RodERV21-int LTR ERV1 4449 4844 -147 4 1423 589 219 23 0 chr5 109952758 109952886 -42584373 + MTC LTR MaLR 1 131 -290 4 1423 3876 126 41 45 chr5 109953202 109953956 -42583303 + RMER17A LTR ERVK 1 751 0 4 1423 477 282 195 6 chr5 109954080 109954244 -42583015 + MTC LTR MaLR 125 319 -102 4 1423 1185 181 19 0 chr5 109954508 109954724 -42582535 - RLTR1 LTR ERV1 0 624 405 4 1423 2653 224 19 9 chr5 109954758 109955325 -42581934 - MMERGLN-int LTR ERV1 -6660 896 324 4 1423 466 193 16 81 chr5 109955298 109955422 -42581837 - MMERGLN-int LTR ERV1 -7117 439 324 4 1423 1070 174 184 134 chr5 109955395 109955813 -42581446 - MMERGLN-int LTR ERV1 -7117 439 1 4 1423 1532 232 102 25 chr5 109955813 109956305 -42580954 - RLTR1 LTR ERV1 0 624 82 4 1423 1174 61 7 0 chr5 109957159 109957306 -42579953 - B1_Mus1 SINE Alu 0 148 1 4 1423 522 250 65 0 chr5 109958571 109958695 -42578564 + MTC LTR MaLR 288 419 0 4 1423 31 44 0 0 chr5 109959210 109959255 -42578004 + AT_rich Low_complexity Low_complexity 1 45 0 4 1423 673 320 53 26 chr5 109959337 109959706 -42577553 + Lx9 LINE L1 6922 7389 -255 4 1423 213 108 0 0 chr5 109959706 109959743 -42577516 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1423 535 357 131 18 chr5 109959743 109959869 -42577390 + Lx9 LINE L1 7330 7473 0 4 1423 28 48 0 0 chr5 109960218 109960260 -42576999 + AT_rich Low_complexity Low_complexity 1 42 0 4 1423 2927 37 6 8 chr5 109960640 109960993 -42576266 + L1Md_F3 LINE L1 6232 6583 -1 4 1423 276 53 0 0 chr5 109961781 109961819 -42575440 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1423 34758 64 1 16 chr5 109962222 109967352 -42569907 + L1Md_F2 LINE L1 540 5586 -297 4 1423 8251 47 1 1 chr5 109967352 109968346 -42568913 + L1Md_F2 LINE L1 5587 6580 -2 4 1423 210 309 51 10 chr5 109968375 109968473 -42568786 - L2 LINE L2 -2540 879 778 4 1423 535 317 62 14 chr5 109968473 109968684 -42568575 + B4A SINE B4 2 222 -70 4 1423 243 292 59 42 chr5 109968686 109968762 -42568497 - Tigger15a DNA TcMar -197 518 441 4 1423 544 289 162 11 chr5 109968762 109969028 -42568231 - MER119 DNA MER1_type -2 581 276 4 1423 260 270 50 28 chr5 109969229 109969370 -42567889 - L1MC4 LINE L1 -790 7252 7109 4 1424 2472 165 80 10 chr5 109969417 109969907 -42567352 - RLTR11A LTR ERVK 0 528 5 4 1424 5197 194 63 45 chr5 109969950 109970202 -42567057 - MYSERV16_I-int LTR ERVK -729 1597 1318 5 1424 1196 57 0 0 chr5 109970202 109970343 -42566916 + B1_Mus1 SINE Alu 2 142 -6 5 1424 279 0 0 0 chr5 109970345 109970376 -42566883 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 5 1424 5197 194 63 45 chr5 109970376 109970709 -42566550 - MYSERV16_I-int LTR ERVK -1009 1317 983 5 1424 1191 57 0 0 chr5 109970709 109970850 -42566409 + B1_Mus2 SINE Alu 1 141 -6 5 1424 867 103 7 14 chr5 109970852 109971000 -42566259 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 5 1424 5197 194 63 45 chr5 109971000 109971537 -42565722 - MYSERV16_I-int LTR ERVK -1344 982 429 5 1424 1548 58 0 21 chr5 109971537 109971731 -42565528 + B2_Mm1t SINE B2 1 190 -3 5 1424 5197 194 63 45 chr5 109971731 109971957 -42565302 - MYSERV16_I-int LTR ERVK -1898 428 218 5 1424 1194 75 0 0 chr5 109972121 109972268 -42564991 + B1_Mus1 SINE Alu 2 148 0 5 1424 293 62 21 0 chr5 109972268 109972316 -42564943 + (CAAAA)n Simple_repeat Simple_repeat 3 51 0 5 1424 269 224 0 0 chr5 109972606 109972664 -42564595 + Lx7 LINE L1 7263 7320 -376 5 1424 24 0 0 0 chr5 109972664 109972688 -42564571 + AT_rich Low_complexity Low_complexity 1 24 0 5 1424 1310 20 0 0 chr5 109972688 109972835 -42564424 - B1_Mm SINE Alu 0 147 1 5 1424 336 24 0 0 chr5 109972929 109972970 -42564289 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1424 21 0 0 0 chr5 109973102 109973123 -42564136 + AT_rich Low_complexity Low_complexity 1 21 0 5 1424 270 336 96 0 chr5 109973200 109973325 -42563934 - L2 LINE L2 -783 2636 2500 5 1424 322 140 29 20 chr5 109973446 109973548 -42563711 + (TAGA)n Simple_repeat Simple_repeat 4 106 0 5 1424 3045 243 104 22 chr5 109973550 109974609 -42562650 - RMER1C Other Other -23 1319 42 5 1424 368 233 38 102 chr5 109975005 109975113 -42562146 + PB1 SINE Alu 8 116 -11 5 1424 423 0 0 0 chr5 109975262 109975309 -42561950 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1424 1478 137 80 0 chr5 109975517 109975743 -42561516 + RLTR21 LTR ERVK 1 244 -1328 5 1424 496 254 140 34 chr5 109975965 109976144 -42561115 + B3 SINE B2 9 206 -10 5 1424 293 319 51 121 chr5 109976316 109976455 -42560804 + B1_Mur2 SINE Alu 1 133 -16 5 1424 1314 76 43 21 chr5 109976455 109976643 -42560616 - B2_Mm2 SINE B2 -2 193 2 5 1424 293 319 51 121 chr5 109976643 109976660 -42560599 + B1_Mur2 SINE Alu 134 146 -3 5 1424 506 173 10 0 chr5 109976777 109976881 -42560378 + CT-rich Low_complexity Low_complexity 2 106 0 5 1424 1223 48 0 0 chr5 109976889 109977034 -42560225 - B1_Mus1 SINE Alu -1 147 3 5 1424 756 219 61 11 chr5 109977085 109977265 -42559994 - B2_Mm2 SINE B2 -1 194 6 5 1424 227 322 11 22 chr5 109978209 109978267 -42558992 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1424 3593 21 139 0 chr5 109978267 109978700 -42558559 + MT2_Mm LTR ERVL 1 493 0 5 1424 227 322 11 22 chr5 109978700 109978730 -42558529 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1424 220 113 37 19 chr5 109978732 109978786 -42558473 + (CCCTAA)n Simple_repeat Simple_repeat 4 58 0 5 1424 225 0 0 0 chr5 109979830 109979855 -42557404 + (CAGGC)n Simple_repeat Simple_repeat 3 27 0 5 1424 201 302 0 50 chr5 109979856 109979957 -42557302 + C-rich Low_complexity Low_complexity 5 100 0 5 1424 180 0 0 0 chr5 109981168 109981188 -42556071 + (G)n Simple_repeat Simple_repeat 1 20 0 5 1424 189 0 0 0 chr5 109983007 109983028 -42554231 + (G)n Simple_repeat Simple_repeat 1 21 0 5 1424 209 140 0 23 chr5 109984114 109984158 -42553101 + G-rich Low_complexity Low_complexity 5 47 0 5 1424 207 100 0 0 chr5 109987830 109987860 -42549399 + (CCG)n Simple_repeat Simple_repeat 3 32 0 5 1424 189 121 0 0 chr5 109988113 109988146 -42549113 + (G)n Simple_repeat Simple_repeat 1 33 0 5 1424 385 143 24 61 chr5 109988228 109988310 -42548949 + RLTR11A LTR ERVK 400 478 -50 5 1424 503 333 6 6 chr5 109988671 109988831 -42548428 + MTD LTR MaLR 27 186 -233 5 1424 692 47 0 0 chr5 109988831 109988917 -42548342 + B1_Mur4 SINE Alu 65 150 0 5 1424 280 64 21 21 chr5 109988917 109988965 -42548294 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 5 1424 824 153 0 0 chr5 109988975 109989099 -42548160 + L1VL1 LINE L1 1 124 -6298 5 1424 5099 127 24 96 chr5 109989099 109989271 -42547988 - RLTR13D6 LTR ERVK 0 902 745 5 1424 1176 62 0 20 chr5 109989271 109989420 -42547839 - B1_Mm SINE Alu 0 147 2 5 1424 5099 127 24 96 chr5 109989420 109990219 -42547040 - RLTR13D6 LTR ERVK -158 744 1 5 1424 5326 70 14 29 chr5 109990220 109990953 -42546306 + L1VL1 LINE L1 312 1033 -5389 5 1424 3421 97 10 23 chr5 109990953 109991368 -42545891 - L1VL4 LINE L1 -2201 1616 1198 5 1424 207 0 0 0 chr5 109991368 109991391 -42545868 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5 1424 1025 95 0 7 chr5 109991391 109991529 -42545730 - B1_Mm SINE Alu -10 137 1 5 1424 3421 210 39 41 chr5 109991529 109992350 -42544909 - L1VL4 LINE L1 -5363 1197 95 5 1424 337 298 138 6 chr5 109992358 109992529 -42544730 - MTC LTR MaLR -213 194 1 5 1424 29 0 0 0 chr5 109992604 109992633 -42544626 + AT_rich Low_complexity Low_complexity 1 29 0 5 1424 722 210 0 0 chr5 109992640 109992783 -42544476 + MERVL_2A-int LTR ERVL 4000 4142 -1619 5 1424 279 265 0 0 chr5 109992797 109992865 -42544394 + MERVL_2A-int LTR ERVL 4455 4522 -963 5 1424 590 215 6 18 chr5 109992925 109993091 -42544168 + MERVL_2A-int LTR ERVL 5481 5644 -117 5 1424 389 320 19 7 chr5 109993134 109993288 -42543971 - Lx7 LINE L1 -587 7109 6954 5 1424 510 309 12 0 chr5 109993296 109993461 -42543798 + Lx7 LINE L1 6363 6529 -1167 5 1424 372 329 73 34 chr5 109993523 109993932 -42543327 + Lx9 LINE L1 7121 7545 -99 5 1424 891 290 62 75 chr5 109994672 109995056 -42542203 - MTD LTR MaLR -13 406 28 5 1424 315 0 0 0 chr5 109997705 109997740 -42539519 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1424 6827 183 39 71 chr5 109998409 109999996 -42537263 - ORR1A3-int LTR MaLR -367 1596 72 5 1424 319 122 0 0 chr5 110000001 110000050 -42537209 - ORR1A3-int LTR MaLR -1460 49 1 1 1424 830 157 23 1 chr5 110000050 110000206 -42537053 - ORR1A3 LTR MaLR 0 394 186 1 1424 258 135 0 0 chr5 110000580 110000632 -42536627 - Lx LINE L1 -3 6651 6600 2 1424 1243 85 6 0 chr5 110000634 110000811 -42536448 + Lx2 LINE L1 6210 6387 -610 3 1424 774 226 22 79 chr5 110001179 110001457 -42535802 + Lx2B LINE L1 6720 6981 -19 4 1424 21 36 0 0 chr5 110001621 110001649 -42535610 + AT_rich Low_complexity Low_complexity 1 28 0 5 1424 4956 199 17 15 chr5 110002354 110003598 -42533661 - Lx3C LINE L1 -261 6715 5467 6 1424 585 154 23 0 chr5 110003655 110003785 -42533474 - Lx2 LINE L1 -1 6996 6864 7 1424 560 125 0 0 chr5 110004036 110004124 -42533135 + Lx3A LINE L1 6529 6616 -365 8 1424 454 82 0 64 chr5 110004119 110004197 -42533062 + Lx3_Mus LINE L1 6758 6830 -179 9 1424 687 78 39 0 chr5 110004433 110004536 -42532723 + Lx3_Mus LINE L1 6772 6878 -131 1 1424 238 26 0 49 chr5 110004594 110004635 -42532624 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1424 1158 51 0 0 chr5 110004635 110004772 -42532487 - B1_Mus2 SINE Alu -10 137 1 1 1424 38 0 0 0 chr5 110005488 110005526 -42531733 + AT_rich Low_complexity Low_complexity 1 38 0 1 1424 2284 156 30 2 chr5 110006092 110006496 -42530763 - Lx3B LINE L1 0 6973 6559 1 1424 229 239 0 15 chr5 110006666 110006734 -42530525 - B1_Mur4 SINE Alu -2 148 82 1 1424 2083 211 21 57 chr5 110007931 110008510 -42528749 - Lx2B LINE L1 -13 6987 6430 1 1424 459 175 58 10 chr5 110008526 110008630 -42528629 + URR1B DNA MER1_type 117 225 0 1 1424 271 205 134 39 chr5 110008630 110008656 -42528603 - CYRA11_Mm Unknown Y-chromosome -440 177 140 1 1424 730 238 26 21 chr5 110009054 110009247 -42528012 + Lx4B LINE L1 6858 7051 -7 1 1424 252 0 0 0 chr5 110009252 110009280 -42527979 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2 1424 216 175 0 0 chr5 110009563 110009603 -42527656 + (ATTG)n Simple_repeat Simple_repeat 3 42 0 2 1424 564 314 51 49 chr5 110009695 110010127 -42527132 - Lx9 LINE L1 -281 7363 6931 2 1424 282 276 68 11 chr5 110010139 110010227 -42527032 - MTA_Mm LTR MaLR -290 106 14 2 1424 3318 38 2 10 chr5 110010307 110010706 -42526553 + MTA_Mm LTR MaLR 1 396 0 2 1424 205 226 0 88 chr5 110011100 110011202 -42526057 + T-rich Low_complexity Low_complexity 2 94 0 2 1424 252 59 0 0 chr5 110011257 110011291 -42525968 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1424 6433 198 31 103 chr5 110012316 110012853 -42524406 + L1_Mur2 LINE L1 3575 4133 -1744 2 1424 2336 69 7 0 chr5 110012853 110013156 -42524103 + L1_Mus3 LINE L1 6332 6636 -2 2 1424 6433 198 31 103 chr5 110013156 110014647 -42522612 + L1_Mur2 LINE L1 4134 5457 -420 2 1424 2291 220 52 17 chr5 110016574 110017273 -42519986 + L1VL4 LINE L1 504 1216 -2343 2 1424 1170 48 0 7 chr5 110017273 110017420 -42519839 + B1_Mus2 SINE Alu 2 147 0 3 1424 2291 204 90 31 chr5 110017420 110017740 -42519519 + L1VL4 LINE L1 1217 1567 -1992 2 1424 527 128 0 60 chr5 110017740 110017840 -42519419 - RLTRETN_Mm LTR ERVK 0 322 229 3 1424 294 87 0 0 chr5 110017840 110017886 -42519373 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1424 993 247 32 72 chr5 110017887 110018232 -42519027 - RLTR9C LTR ERVK -62 331 1 3 1424 4916 252 60 134 chr5 110018232 110019512 -42517747 + L1_Mur3 LINE L1 1916 2909 -2977 3 1424 540 0 0 0 chr5 110019512 110019572 -42517687 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1424 5435 237 92 16 chr5 110019572 110021270 -42515989 + L1_Mur3 LINE L1 2805 4634 -1252 3 1424 288 0 0 0 chr5 110021270 110021302 -42515957 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1424 5435 237 92 16 chr5 110021302 110021340 -42515919 + L1_Mur3 LINE L1 4627 4658 -1222 3 1424 2905 71 16 5 chr5 110021340 110021721 -42515538 - IAPEY_LTR LTR ERVK 0 385 1 3 1424 5435 237 92 16 chr5 110021721 110021918 -42515341 + L1_Mur3 LINE L1 4659 4884 -996 3 1424 833 263 116 20 chr5 110021977 110022427 -42514832 - ORR1A3-int LTR MaLR -1065 898 406 3 1424 318 61 47 35 chr5 110022436 110022521 -42514738 + (TTTTG)n Simple_repeat Simple_repeat 4 89 0 3 1424 1187 68 7 0 chr5 110022548 110022695 -42514564 - B1_Mus1 SINE Alu 0 148 1 4 1424 2049 174 82 19 chr5 110022787 110023202 -42514057 - BGLII_B LTR ERVK 0 441 1 4 1424 342 0 0 0 chr5 110023768 110023806 -42513453 + (GGA)n Simple_repeat Simple_repeat 3 40 0 4 1424 1138 90 0 11 chr5 110023806 110023986 -42513273 + (GAA)n Simple_repeat Simple_repeat 1 178 0 4 1424 279 269 0 0 chr5 110024084 110024136 -42513123 + B1_Mus2 SINE Alu 59 110 -37 4 1424 335 293 34 17 chr5 110024598 110024716 -42512543 + RLTR23 LTR ERV1 311 430 0 4 1424 256 305 54 8 chr5 110025441 110025570 -42511689 + MURVY-int LTR ERV1 599 733 -6868 4 1424 344 219 0 8 chr5 110025993 110026076 -42511183 + MURVY-int LTR ERV1 1222 1286 -6166 4 1424 372 359 78 36 chr5 110026501 110027163 -42510096 + RLTR4_MM-int LTR ERV1 3683 4372 -3229 4 1424 759 264 41 19 chr5 110027279 110027549 -42509710 + RLTR4_MM-int LTR ERV1 4924 5199 -2402 4 1424 234 0 0 0 chr5 110027918 110027944 -42509315 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1424 1176 99 0 0 chr5 110029098 110029259 -42508000 + B2_Mm2 SINE B2 2 162 -33 4 1424 180 0 0 0 chr5 110029259 110029279 -42507980 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 1424 998 150 67 0 chr5 110029279 110029297 -42507962 + B2_Mm1t SINE B2 175 192 -1 5 1424 1272 213 85 0 chr5 110029964 110030246 -42507013 + LSU-rRNA_Hsa rRNA rRNA 2 307 -4728 5 1424 4246 199 62 12 chr5 110030247 110031088 -42506171 - RMER13B LTR ERVK -21 887 5 5 1424 1595 213 140 26 chr5 110031093 110031585 -42505674 + RLTR22_Mur LTR ERVK 1298 1845 -3 5 1424 594 242 12 43 chr5 110032433 110032597 -42504662 - FordPrefect DNA Tip100 -728 955 797 5 1424 334 135 40 13 chr5 110032754 110032829 -42504430 + G-rich Low_complexity Low_complexity 3 79 0 5 1424 450 270 130 13 chr5 110034530 110034684 -42502575 - ID_B1 SINE B4 -3 221 50 5 1424 423 0 0 0 chr5 110034758 110034805 -42502454 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1424 879 152 11 6 chr5 110034882 110035061 -42502198 + CT-rich Low_complexity Low_complexity 1 180 0 5 1424 223 333 0 44 chr5 110035061 110035152 -42502107 - B1_Mur2 SINE Alu 0 149 63 6 1424 258 136 0 0 chr5 110035186 110035230 -42502029 + (CCA)n Simple_repeat Simple_repeat 1 44 0 6 1424 3022 74 5 2 chr5 110035365 110035760 -42501499 - MTA_Mm LTR MaLR 0 396 1 6 1424 1132 49 0 0 chr5 110036038 110036180 -42501079 + B1_Mus1 SINE Alu 7 148 0 6 1424 255 125 0 0 chr5 110036180 110036220 -42501039 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1424 23 33 0 0 chr5 110036783 110036813 -42500446 + AT_rich Low_complexity Low_complexity 1 30 0 6 1424 265 333 88 7 chr5 110036824 110036960 -42500299 - B1_Mur2 SINE Alu -2 147 1 6 1424 189 0 0 0 chr5 110036985 110037006 -42500253 + (TTG)n Simple_repeat Simple_repeat 2 22 0 6 1424 294 29 0 0 chr5 110037067 110037102 -42500157 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1424 553 175 8 16 chr5 110037305 110037433 -42499826 + GA-rich Low_complexity Low_complexity 1 127 0 6 1424 204 211 0 0 chr5 110037573 110037644 -42499615 + (TG)n Simple_repeat Simple_repeat 2 72 0 7 1424 744 71 0 0 chr5 110037797 110037896 -42499363 + (TATG)n Simple_repeat Simple_repeat 4 102 0 7 1424 206 196 0 0 chr5 110038128 110038156 -42499103 + polypyrimidine Low_complexity Low_complexity 25 52 0 7 1424 318 67 0 0 chr5 110038156 110038201 -42499058 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1424 206 196 0 0 chr5 110038201 110038223 -42499036 + polypyrimidine Low_complexity Low_complexity 3 24 0 7 1424 234 136 0 0 chr5 110038326 110038370 -42498889 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 1424 730 238 78 155 chr5 110038517 110038865 -42498394 - RLTR11A LTR ERVK -188 340 20 7 1424 24 53 0 0 chr5 110038913 110038951 -42498308 + AT_rich Low_complexity Low_complexity 1 38 0 7 1424 4948 165 62 3 chr5 110038972 110039727 -42497532 - MYSERV16_I-int LTR ERVK -130 2196 1416 7 1424 919 226 119 49 chr5 110039727 110040071 -42497188 - RLTR9A LTR ERVK 0 368 1 7 1424 4948 165 62 3 chr5 110040071 110040285 -42496974 - MYSERV16_I-int LTR ERVK -911 1415 1187 7 1424 441 0 0 0 chr5 110040285 110040334 -42496925 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 8 1424 4948 165 62 3 chr5 110040334 110040419 -42496840 - MYSERV16_I-int LTR ERVK -1140 1186 1080 7 1424 3158 89 2 72 chr5 110040420 110040547 -42496712 + MusHAL1 LINE L1 1543 1669 -1043 8 1424 2608 84 179 59 chr5 110040547 110041004 -42496255 + RLTR1B LTR ERV1 1 512 0 8 1424 3158 89 2 72 chr5 110041004 110041445 -42495814 + MusHAL1 LINE L1 1670 2071 -641 8 1424 773 60 259 0 chr5 110041641 110041757 -42495502 + B1_Mus1 SINE Alu 2 147 -1 8 1424 22 0 0 0 chr5 110041758 110041780 -42495479 + AT_rich Low_complexity Low_complexity 1 22 0 8 1424 2821 58 9 0 chr5 110041882 110042225 -42495034 + ORR1A1 LTR MaLR 1 346 0 8 1424 30 45 0 0 chr5 110042508 110042552 -42494707 + AT_rich Low_complexity Low_complexity 1 44 0 8 1424 244 299 62 38 chr5 110042570 110042702 -42494557 - RMER4B LTR ERVK -34 551 311 8 1424 3322 181 15 32 chr5 110042708 110043426 -42493833 - MYSERV16_I-int LTR ERVK -1406 920 215 8 1424 377 0 0 40 chr5 110043426 110043476 -42493783 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 8 1424 1401 113 114 29 chr5 110043476 110043563 -42493696 - Lx LINE L1 -33 6621 6534 9 1424 180 0 0 0 chr5 110043563 110043583 -42493676 + (CCCA)n Simple_repeat Simple_repeat 2 21 0 9 1424 1401 113 114 29 chr5 110043583 110043776 -42493483 - Lx LINE L1 -121 6533 6319 9 1424 944 219 20 8 chr5 110043776 110044020 -42493239 - MYSERV16_I-int LTR ERVK -2099 227 1 8 1424 10222 181 17 12 chr5 110045376 110047462 -42489797 - L1_Mur2 LINE L1 -117 5760 3665 9 1424 36812 45 1 13 chr5 110048226 110054374 -42482885 - L1Md_T LINE L1 -2 6580 511 9 1424 26 0 0 0 chr5 110054887 110054913 -42482346 + AT_rich Low_complexity Low_complexity 1 26 0 9 1424 1961 136 113 8 chr5 110055601 110055956 -42481303 - ORR1B1 LTR MaLR 0 394 3 9 1424 470 267 8 55 chr5 110056006 110056074 -42481185 + B1_Mur2 SINE Alu 23 90 -59 9 1424 2617 79 48 24 chr5 110056074 110056448 -42480811 + RLTR9A2 LTR ERVK 1 383 0 9 1424 470 267 8 55 chr5 110056448 110056506 -42480753 + B1_Mur2 SINE Alu 91 143 -6 9 1424 468 296 27 14 chr5 110057027 110057174 -42480085 + Lx8 LINE L1 7120 7268 -205 9 1424 236 135 0 0 chr5 110057592 110057629 -42479630 + RMER2 LTR ERV1 529 565 -2 9 1424 914 305 38 3 chr5 110057634 110057976 -42479283 - Lx9 LINE L1 -768 6876 6523 1 1424 326 167 0 0 chr5 110057992 110058046 -42479213 + RLTR23 LTR ERV1 1 54 -376 1 1424 328 206 59 0 chr5 110058122 110058190 -42479069 + RLTR23 LTR ERV1 226 297 -133 1 1424 33149 54 3 7 chr5 110058190 110063166 -42474093 + L1Md_F3 LINE L1 633 5586 -297 1 1424 8220 36 4 1 chr5 110063166 110064145 -42473114 + L1Md_F3 LINE L1 5587 6568 -16 1 1424 902 155 20 0 chr5 110064164 110064312 -42472947 + RLTR23 LTR ERV1 280 430 0 1 1424 312 302 44 69 chr5 110065405 110065608 -42471651 + RLTR4_MM-int LTR ERV1 1253 1450 -6151 1 1424 811 135 123 37 chr5 110065637 110065799 -42471460 - RMER2 LTR ERV1 -391 176 1 1 1424 1977 238 40 28 chr5 110065803 110066304 -42470955 - RMER19C LTR ERVK -2 609 103 1 1424 530 336 47 66 chr5 110066365 110066684 -42470575 + RLTR25B LTR ERVK 1 313 -715 1 1424 685 109 0 0 chr5 110067260 110067373 -42469886 - L1_Mus4 LINE L1 -1760 5936 5827 1 1424 765 125 0 0 chr5 110067374 110067494 -42469765 + (TC)n Simple_repeat Simple_repeat 1 120 0 1 1424 1161 71 13 0 chr5 110067495 110067649 -42469610 - B2_Mm1t SINE B2 -36 157 2 1 1424 2116 142 0 0 chr5 110067649 110067981 -42469278 - L1_Mus4 LINE L1 -42 5841 5510 1 1424 4941 89 41 0 chr5 110067983 110068671 -42468588 + L1_Mus4 LINE L1 5915 6630 -6 1 1424 21 82 0 0 chr5 110068746 110068795 -42468464 + AT_rich Low_complexity Low_complexity 1 49 0 1 1424 654 343 49 18 chr5 110069124 110069513 -42467746 + Lx9 LINE L1 6921 7321 -323 1 1424 510 17 0 0 chr5 110069519 110069578 -42467681 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1424 432 0 0 0 chr5 110069681 110069729 -42467530 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1 1424 315 294 24 0 chr5 110070257 110070342 -42466917 + PB1D9 SINE Alu 8 94 -26 1 1424 601 172 19 130 chr5 110070297 110070451 -42466808 - B2_Mm2 SINE B2 -58 137 1 1 1424 236 330 42 59 chr5 110070612 110070731 -42466528 - B1_Mur3 SINE Alu -9 140 24 1 1424 2941 196 50 54 chr5 110071351 110072438 -42464821 - L1_Mur3 LINE L1 -3839 2041 942 1 1424 2513 193 7 7 chr5 110072438 110072892 -42464367 - RLTR11A LTR ERVK 0 528 75 1 1424 572 272 0 0 chr5 110073181 110073295 -42463964 + RSINE1 SINE B4 6 119 -46 1 1424 227 302 0 0 chr5 110073725 110073778 -42463481 - B1_Mus1 SINE Alu -68 80 28 1 1424 352 326 58 77 chr5 110073812 110074138 -42463121 + RLTR46 LTR ERVK 1 320 0 1 1424 260 240 13 13 chr5 110074415 110074491 -42462768 + IAPLTR3-int LTR ERVK 371 446 -6375 1 1424 36624 182 16 5 chr5 110074476 110081807 -42455452 + IAPEY3-int LTR ERVK 246 7680 0 1 1424 352 326 58 77 chr5 110081807 110082133 -42455126 + RLTR46 LTR ERVK 1 320 0 1 1424 265 217 0 0 chr5 110082509 110082569 -42454690 - L1_Rod LINE L1 -1801 4046 3987 1 1424 386 236 44 22 chr5 110082592 110082683 -42454576 - B1_Mus1 SINE Alu -21 127 35 1 1424 210 234 0 78 chr5 110082720 110082771 -42454488 + PB1D9 SINE Alu 47 93 -27 1 1424 302 298 0 0 chr5 110082782 110082876 -42454383 - L1_Rod LINE L1 -1874 3973 3880 1 1424 225 0 0 0 chr5 110082896 110082921 -42454338 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 1424 765 240 71 157 chr5 110083003 110083481 -42453778 + RMER2 LTR ERV1 5 540 -27 1 1424 1208 116 11 0 chr5 110083502 110083691 -42453568 - MurSatRep1 Unknown Unknown -1265 872 682 1 1424 288 0 0 0 chr5 110083707 110083739 -42453520 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1424 284 299 41 10 chr5 110083764 110083862 -42453397 + MTC LTR MaLR 13 113 -308 1 1424 21425 151 19 34 chr5 110083862 110089008 -42448251 + L1VL4 LINE L1 467 5536 -350 1 1424 3354 125 83 2 chr5 110089001 110089592 -42447667 + Lx2 LINE L1 6005 6643 -354 1 1424 1424 108 0 0 chr5 110089592 110089796 -42447463 + Lx2 LINE L1 6775 6978 -19 1 1424 473 332 62 10 chr5 110089796 110089827 -42447432 + L1Md_T LINE L1 6302 6332 -250 1 1424 1139 148 11 5 chr5 110090024 110090214 -42447045 + B2_Mm1t SINE B2 1 191 -2 1 1424 1133 75 0 7 chr5 110090706 110090854 -42446405 - B1_Mus1 SINE Alu -1 147 1 1 1424 583 181 13 0 chr5 110091692 110091847 -42445412 + (CCCTAG)n Simple_repeat Simple_repeat 5 161 0 1 1424 245 175 25 34 chr5 110091891 110092009 -42445250 + (CCCTAA)n Simple_repeat Simple_repeat 3 119 0 1 1424 339 194 0 0 chr5 110092058 110092156 -42445103 + (CCCTAA)n Simple_repeat Simple_repeat 1 98 0 1 1424 611 133 0 56 chr5 110092210 110092541 -42444718 + (CCCTAA)n Simple_repeat Simple_repeat 1 312 0 1 1424 241 127 0 52 chr5 110092562 110092620 -42444639 + (CCCTAA)n Simple_repeat Simple_repeat 6 60 0 1 1424 713 78 5 87 chr5 110092646 110092842 -42444417 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 1 1424 246 95 67 67 chr5 110092859 110092949 -42444310 + (CCCTAA)n Simple_repeat Simple_repeat 1 90 0 1 1424 41 0 0 0 chr5 110092970 110093011 -42444248 + AT_rich Low_complexity Low_complexity 1 41 0 1 1424 261 0 0 0 chr5 110093084 110093113 -42444146 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1424 23 33 0 0 chr5 110093613 110093643 -42443616 + AT_rich Low_complexity Low_complexity 1 30 0 1 1424 6092 83 5 1 chr5 110095049 110095895 -42441364 + RLTR22_Mus LTR ERVK 1 849 -959 1 1424 285 299 112 84 chr5 110096135 110096350 -42440909 + RMER12 LTR ERVK 1102 1322 0 1 1424 1377 57 5 35 chr5 110096559 110096758 -42440501 + B2_Mm2 SINE B2 3 195 0 1 1424 1124 76 7 0 chr5 110097649 110097794 -42439465 + B1_Mus1 SINE Alu 2 147 -1 1 1424 222 37 0 0 chr5 110097965 110097992 -42439267 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1 1424 1162 70 0 0 chr5 110098032 110098174 -42439085 - B1_Mus1 SINE Alu -6 142 1 1 1424 239 262 100 0 chr5 110098562 110098642 -42438617 + Tigger7 DNA MER2_type 2321 2408 -83 1 1424 223 281 62 0 chr5 110098913 110098977 -42438282 + MIRb SINE MIR 191 258 -10 1 1424 279 391 40 6 chr5 110098994 110099169 -42438090 - Tigger15a DNA TcMar -136 579 399 1 1424 463 250 21 0 chr5 110099438 110099556 -42437703 + PB1D10 SINE Alu 4 117 0 1 1424 215 333 193 20 chr5 110099556 110099588 -42437671 + B4A SINE B4 89 264 -28 1 1424 1940 160 63 20 chr5 110099655 110100006 -42437253 - ORR1B2 LTR MaLR 0 367 2 1 1425 63 57 0 0 chr5 110101016 110101121 -42436138 + AT_rich Low_complexity Low_complexity 1 105 0 1 1425 751 201 16 38 chr5 110101440 110101475 -42435784 - B2_Mm1t SINE B2 -10 183 152 1 1425 320 0 25 0 chr5 110101475 110101515 -42435744 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1 1425 888 113 3 13 chr5 110101515 110101665 -42435594 - B2_Mm2 SINE B2 -42 151 2 1 1425 1200 88 0 0 chr5 110101690 110101850 -42435409 - B2_Mm2 SINE B2 -31 164 5 1 1425 345 324 58 10 chr5 110103213 110103316 -42433943 + PB1D9 SINE Alu 3 110 -10 1 1425 240 326 0 23 chr5 110103334 110103422 -42433837 + GA-rich Low_complexity Low_complexity 1 86 0 1 1425 1621 201 61 0 chr5 110103512 110103840 -42433419 - ORR1B1 LTR MaLR 0 394 47 1 1425 415 349 20 20 chr5 110103958 110104256 -42433003 - MurSatRep1 Unknown Unknown -89 2048 1751 1 1425 297 326 16 8 chr5 110104214 110104422 -42432837 - MMSAT4 Satellite Satellite 0 209 1 1 1425 208 0 62 0 chr5 110104441 110104473 -42432786 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1425 1109 95 7 0 chr5 110104479 110104626 -42432633 - B1_Mus1 SINE Alu 0 148 1 1 1425 415 342 15 19 chr5 110104626 110104885 -42432374 - MurSatRep1 Unknown Unknown -129 2008 1751 1 1425 461 267 13 12 chr5 110104675 110105653 -42431606 - MMSAT4 Satellite Satellite 0 979 1 1 1425 521 331 42 23 chr5 110105597 110105981 -42431278 - MurSatRep1 Unknown Unknown 0 2137 1747 1 1425 541 282 14 14 chr5 110105935 110106093 -42431166 - MMSAT4 Satellite Satellite 0 474 47 1 1425 303 335 27 27 chr5 110106093 110106394 -42430865 - MurSatRep1 Unknown Unknown -83 2054 1754 1 1425 541 282 14 14 chr5 110106394 110106409 -42430850 - MMSAT4 Satellite Satellite 0 46 1 1 1425 10116 120 50 21 chr5 110106437 110108238 -42429021 - MurSatRep1 Unknown Unknown 0 2137 284 1 1425 383 296 9 9 chr5 110108238 110108347 -42428912 + PB1D9 SINE Alu 1 109 -11 1 1425 943 99 28 0 chr5 110108347 110108489 -42428770 - MurSatRep1 Unknown Unknown -1991 146 1 1 1425 664 310 24 24 chr5 110108572 110108777 -42428482 + B3 SINE B2 10 214 -2 1 1425 453 224 111 7 chr5 110109027 110109162 -42428097 + B1_Mur3 SINE Alu 1 149 0 1 1425 261 0 0 0 chr5 110109330 110109359 -42427900 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1425 1039 242 48 134 chr5 110109462 110109925 -42427334 + RLTR23 LTR ERV1 8 430 0 1 1425 231 330 8 59 chr5 110109925 110110015 -42427244 - ORR1D2 LTR MaLR -286 84 1 1 1425 1015 241 48 24 chr5 110110015 110110125 -42427134 - ORR1D2-int LTR MaLR -24 1346 1244 1 1425 1050 120 21 52 chr5 110110125 110110318 -42426941 - B2_Mm2 SINE B2 -8 187 1 1 1425 1015 241 48 24 chr5 110110318 110110500 -42426759 - ORR1D2-int LTR MaLR -127 1243 1048 1 1425 2728 252 45 55 chr5 110110502 110111352 -42425907 + Lx6 LINE L1 5699 6542 -918 1 1425 405 0 0 0 chr5 110111352 110111397 -42425862 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1425 2728 252 45 55 chr5 110111397 110111561 -42425698 + Lx6 LINE L1 6543 6703 -757 1 1425 1326 249 32 57 chr5 110111541 110111709 -42425550 + Lx6 LINE L1 7059 7230 -230 1 1425 4169 164 77 22 chr5 110111709 110112564 -42424695 + RLTR13D6 LTR ERVK 1 902 0 1 1425 1326 249 32 57 chr5 110112564 110112799 -42424460 + Lx6 LINE L1 7231 7452 -8 1 1425 2683 172 30 36 chr5 110112951 110113632 -42423627 - RMER6A LTR ERVK -32 724 3 1 1425 849 239 58 19 chr5 110114421 110114775 -42422484 + RMER16 LTR ERVK 114 513 -20 1 1425 278 292 60 34 chr5 110115043 110115192 -42422067 - L1M2 LINE L1 -539 5752 5600 1 1425 325 204 63 187 chr5 110117038 110117276 -42419983 + RMER16 LTR ERVK 1 377 -156 1 1425 565 157 72 124 chr5 110117640 110117793 -42419466 + RMER4A LTR ERVK 322 466 0 1 1425 1263 126 71 24 chr5 110118434 110118687 -42418572 + MusHAL1 LINE L1 1815 2079 -633 1 1425 207 88 0 0 chr5 110118758 110118792 -42418467 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1425 360 232 22 106 chr5 110120442 110120610 -42416649 - RLTR9E LTR ERVK -34 375 204 1 1425 723 205 72 14 chr5 110120773 110120996 -42416263 + RMER10A LTR ERVL 63 298 -144 1 1425 227 283 54 108 chr5 110121029 110121215 -42416044 + RMER10B LTR ERVL 202 377 -21 1 1425 450 216 82 11 chr5 110121368 110121514 -42415745 - MT2A LTR ERVL 0 562 410 1 1425 227 239 42 14 chr5 110121672 110121744 -42415515 + MT2A LTR ERVL 21 94 -439 1 1425 701 266 143 32 chr5 110121774 110121972 -42415287 + MT2A LTR ERVL 72 279 -254 1 1425 477 0 0 0 chr5 110121972 110122025 -42415234 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1425 1089 82 0 0 chr5 110122025 110122160 -42415099 - B1_Mus1 SINE Alu -10 138 4 1 1425 813 114 0 0 chr5 110122160 110122283 -42414976 + (TTCC)n Simple_repeat Simple_repeat 3 125 0 1 1425 701 266 143 32 chr5 110122283 110122494 -42414765 + MT2A LTR ERVL 280 527 -6 1 1425 264 148 37 0 chr5 110122699 110122753 -42414506 - L1MC LINE L1 -1124 5022 4967 1 1425 2680 95 128 0 chr5 110123358 110124077 -42413182 + RLTR22_Mus LTR ERVK 1 811 -997 1 1425 261 308 51 91 chr5 110124383 110124558 -42412701 + RMER12 LTR ERVK 1155 1322 0 1 1425 344 281 83 69 chr5 110126236 110126381 -42410878 + RLTR33 LTR ERVK 447 593 -85 2 1425 266 331 16 87 chr5 110126571 110126682 -42410577 - MurSatRep1 Unknown Unknown -115 2022 1914 2 1425 1072 108 0 167 chr5 110126682 110126915 -42410344 - B2_Mm2 SINE B2 0 195 2 2 1425 266 331 16 87 chr5 110126915 110126988 -42410271 - MurSatRep1 Unknown Unknown -224 1913 1851 2 1425 304 394 5 5 chr5 110126958 110127162 -42410097 - MurSatRep1 Unknown Unknown -88 2049 1846 2 1425 920 143 12 12 chr5 110127130 110127300 -42409959 - MurSatRep1 Unknown Unknown 0 2137 1968 2 1425 3477 46 77 16 chr5 110127300 110127807 -42409452 - LTRIS2 LTR ERV1 0 564 27 2 1425 360 64 0 0 chr5 110127816 110127863 -42409396 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1425 387 0 0 0 chr5 110127863 110127905 -42409354 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1425 1064 88 0 26 chr5 110127905 110128045 -42409214 - B1_Mm SINE Alu -8 139 2 2 1425 3486 72 13 2 chr5 110128100 110128549 -42408710 - Lx3_Mus LINE L1 0 7009 6556 2 1425 1546 48 52 14 chr5 110128548 110128761 -42408498 + L1Md_F3 LINE L1 6359 6579 -5 2 1425 973 144 21 0 chr5 110128765 110128959 -42408300 + L1_Mur2 LINE L1 3241 3438 -2439 2 1425 1711 122 3 39 chr5 110128954 110129261 -42407998 - MusHAL1 LINE L1 -1615 1097 802 2 1425 4350 108 82 1 chr5 110129261 110129919 -42407340 + L1_Mus4 LINE L1 5925 6635 -1 2 1425 3805 140 77 12 chr5 110129919 110130586 -42406673 + L1_Mur2 LINE L1 3421 4132 -1745 2 1425 22 70 0 0 chr5 110130586 110130629 -42406630 + AT_rich Low_complexity Low_complexity 1 43 0 2 1425 287 182 0 18 chr5 110130651 110130707 -42406552 - B2_Mm2 SINE B2 -94 101 47 2 1425 1009 155 17 0 chr5 110130756 110130930 -42406329 - B2_Mm1t SINE B2 -16 177 1 2 1425 1148 173 8 27 chr5 110130930 110131186 -42406073 + RLTR21 LTR ERVK 715 965 -607 2 1425 1023 83 21 7 chr5 110131242 110131387 -42405872 + B1_Mus1 SINE Alu 2 148 0 2 1425 477 97 0 0 chr5 110131396 110131468 -42405791 + (GGA)n Simple_repeat Simple_repeat 2 73 0 2 1425 421 112 12 12 chr5 110131469 110131550 -42405709 + RLTR21 LTR ERVK 970 1050 -522 2 1425 435 248 151 27 chr5 110132389 110132702 -42404557 + RLTR12B LTR ERVK 11 335 -192 2 1425 1011 72 28 21 chr5 110132799 110132941 -42404318 + B1_Mm SINE Alu 1 143 -4 2 1425 265 75 38 0 chr5 110132941 110132994 -42404265 + (CAA)n Simple_repeat Simple_repeat 1 55 0 2 1425 329 279 64 35 chr5 110134094 110134235 -42403024 - RodERV21-int LTR ERV1 -4381 610 466 2 1425 311 311 73 15 chr5 110134231 110134368 -42402891 - RodERV21-int LTR ERV1 -4784 207 63 2 1425 1104 100 0 0 chr5 110134590 110134750 -42402509 + (GGAGA)n Simple_repeat Simple_repeat 2 161 0 2 1425 2013 185 65 32 chr5 110134868 110135393 -42401866 + L1_Mur3 LINE L1 1314 1855 -4025 2 1425 2198 108 38 0 chr5 110135393 110135708 -42401551 - ORR1A2 LTR MaLR 0 327 1 2 1425 518 171 0 43 chr5 110135708 110135824 -42401435 - ORR1A2-int LTR MaLR 0 1963 1853 2 1425 954 172 0 6 chr5 110135816 110135997 -42401262 - ORR1A2-int LTR MaLR -347 1616 1437 2 1425 182 109 35 52 chr5 110136002 110136060 -42401199 + (CCCTAA)n Simple_repeat Simple_repeat 1 57 0 2 1425 656 107 5 58 chr5 110136085 110136273 -42400986 + (CCCTAA)n Simple_repeat Simple_repeat 3 180 0 2 1425 30 27 0 0 chr5 110136324 110136361 -42400898 + AT_rich Low_complexity Low_complexity 1 37 0 2 1425 561 206 76 28 chr5 110137167 110137312 -42399947 - RMER10B LTR ERVL -52 346 195 2 1425 213 94 0 0 chr5 110137335 110137367 -42399892 + (GGAGA)n Simple_repeat Simple_repeat 4 35 0 2 1425 1059 151 41 0 chr5 110137872 110138044 -42399215 + B2_Mm1t SINE B2 1 179 -14 2 1425 261 179 424 14 chr5 110138108 110138193 -42399066 + B2_Mm2 SINE B2 50 169 -26 2 1425 429 20 0 0 chr5 110138193 110138243 -42399016 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2 1425 229 158 0 34 chr5 110138243 110138267 -42398992 + B2_Mm2 SINE B2 170 193 -2 2 1425 532 152 71 0 chr5 110138272 110138371 -42398888 - B2_Mm2 SINE B2 -3 192 87 2 1425 738 221 87 66 chr5 110138461 110138518 -42398741 + MTC LTR MaLR 1 55 -366 2 1425 1257 122 16 5 chr5 110138518 110138708 -42398551 + B2_Mm2 SINE B2 1 192 -3 2 1425 738 221 87 66 chr5 110138708 110138737 -42398522 + MTC LTR MaLR 56 77 -344 2 1425 1197 122 0 26 chr5 110138737 110138930 -42398329 + B2_Mm2 SINE B2 4 191 -4 2 1425 738 221 87 66 chr5 110138930 110139084 -42398175 + MTC LTR MaLR 78 247 -174 2 1425 530 279 32 48 chr5 110139239 110139427 -42397832 + B4A SINE B4 1 185 -107 2 1425 234 148 0 0 chr5 110139444 110139498 -42397761 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1425 24626 62 0 0 chr5 110139930 110143033 -42394226 + L1Md_F2 LINE L1 2484 5586 -297 2 1425 8057 55 1 2 chr5 110143033 110144018 -42393241 + L1Md_F2 LINE L1 5587 6570 -12 2 1425 577 131 0 36 chr5 110144101 110144212 -42393047 - B2_Mm1a SINE B2 -1 192 86 2 1425 488 87 0 0 chr5 110144199 110144268 -42392991 + B2_Mm2 SINE B2 20 88 -107 2 1425 390 21 0 0 chr5 110145537 110145584 -42391675 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1425 4060 143 40 57 chr5 110146053 110146928 -42390331 - RLTR13A3 LTR ERVK 0 978 119 2 1425 1709 188 51 37 chr5 110146946 110147376 -42389883 - BGLII_B LTR ERVK -2 439 4 2 1425 243 0 0 0 chr5 110147780 110147807 -42389452 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 2 1425 268 262 0 91 chr5 110147918 110148006 -42389253 + PB1D10 SINE Alu 9 88 -29 2 1425 1353 80 36 41 chr5 110148270 110148465 -42388794 + B2_Mm2 SINE B2 1 194 -1 2 1425 464 294 77 69 chr5 110148802 110149076 -42388183 - MLT1A0 LTR MaLR -89 276 1 2 1425 299 344 37 74 chr5 110149271 110149434 -42387825 + RSINE1 SINE B4 3 159 -6 2 1425 26 50 0 0 chr5 110149455 110149495 -42387764 + AT_rich Low_complexity Low_complexity 1 40 0 2 1425 4610 121 18 63 chr5 110149796 110150705 -42386554 + RLTR13A3 LTR ERVK 111 978 0 2 1425 296 360 73 0 chr5 110150848 110150998 -42386261 + MER44B DNA MER2_type 145 305 -245 2 1425 318 268 70 39 chr5 110151117 110151245 -42386014 + MER44B DNA MER2_type 356 487 -63 2 1425 190 255 0 0 chr5 110151514 110151561 -42385698 + MIRb SINE MIR 191 237 -31 2 1425 678 252 15 0 chr5 110151956 110152087 -42385172 - ETnERV2-int LTR ERVK -204 7202 7070 2 1425 1000 123 0 7 chr5 110152129 110152276 -42384983 - B1_Mus1 SINE Alu -2 146 1 2 1425 249 278 0 20 chr5 110152278 110152304 -42384955 + ORR1B1-int LTR MaLR 611 749 -755 2 1425 332 255 0 121 chr5 110152304 110152420 -42384839 + MT2B LTR ERVL 156 257 -344 2 1425 993 73 0 0 chr5 110152323 110152460 -42384799 + B1_Mm SINE Alu 6 142 -5 2 1425 183 42 0 0 chr5 110152465 110152489 -42384770 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 1425 488 137 0 0 chr5 110152497 110152570 -42384689 - tRNA-Met_ tRNA tRNA -3 73 1 2 1425 246 291 45 45 chr5 110152750 110152883 -42384376 - Tigger15a DNA TcMar -386 329 197 2 1425 39 92 0 0 chr5 110153642 110153751 -42383508 + AT_rich Low_complexity Low_complexity 1 109 0 2 1425 449 168 117 8 chr5 110154054 110154174 -42383085 - B2_Mm2 SINE B2 0 195 63 2 1425 2832 120 14 39 chr5 110154174 110154661 -42382598 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1425 3022 64 17 19 chr5 110154662 110155322 -42381937 + IAPEz-int LTR ERVK 9 591 -5890 2 1425 787 29 155 0 chr5 110155354 110155457 -42381802 + IAPEz-int LTR ERVK 1359 1477 -5004 2 1425 1828 110 0 0 chr5 110155458 110155704 -42381555 + IAPEz-int LTR ERVK 2252 2497 -5183 2 1425 953 80 24 0 chr5 110155699 110155824 -42381435 + IAPEz-int LTR ERVK 4783 4910 -2770 2 1425 26985 12 5 0 chr5 110155824 110158767 -42378492 + IAPEz-int LTR ERVK 3525 6481 0 2 1425 2902 115 12 39 chr5 110158767 110159255 -42378004 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1425 408 111 0 0 chr5 110159256 110159319 -42377940 - B2_Mm2 SINE B2 -128 67 5 2 1425 5446 72 6 1 chr5 110159631 110160345 -42376914 + L1_Mus1 LINE L1 5851 6567 0 2 1425 274 282 84 0 chr5 110160461 110160592 -42376667 - MER2 DNA MER2_type -80 265 124 2 1425 2700 79 44 30 chr5 110160652 110161057 -42376202 - RLTR10A LTR ERVK 0 411 1 2 1425 4994 74 32 12 chr5 110161057 110161742 -42375517 - RLTR10-int LTR ERVK -1 1986 1288 2 1425 1468 103 23 5 chr5 110161743 110161957 -42375302 - IAP-d-int LTR ERVK -658 5884 5667 2 1425 3585 69 86 14 chr5 110161961 110162448 -42374811 - IAP-d-int LTR ERVK -1015 5527 5006 2 1425 686 174 26 53 chr5 110162455 110162607 -42374652 - IAP-d-int LTR ERVK -6048 494 347 2 1425 2014 77 28 19 chr5 110162601 110162921 -42374338 - IAP-d-int LTR ERVK -1385 602 121 2 1425 2723 75 56 10 chr5 110162921 110163314 -42373945 - RLTR10A LTR ERVK 0 411 1 2 1425 646 154 10 0 chr5 110164261 110164365 -42372894 - PB1D9 SINE Alu -2 118 14 2 1425 1258 41 0 0 chr5 110164365 110164512 -42372747 + B1_Mm SINE Alu 1 147 0 2 1425 1210 232 62 24 chr5 110164536 110164876 -42372383 - ORR1B1 LTR MaLR -1 393 41 2 1425 540 340 40 34 chr5 110164904 110165497 -42371762 - MurSatRep1 Unknown Unknown 0 2137 1940 2 1425 519 207 35 46 chr5 110165497 110165727 -42371532 - MMSAT4 Satellite Satellite 0 227 1 2 1425 540 340 40 34 chr5 110165727 110166305 -42370954 - MurSatRep1 Unknown Unknown 0 1939 1747 2 1425 476 277 4 11 chr5 110166088 110166402 -42370857 - MMSAT4 Satellite Satellite 0 311 1 2 1425 586 326 28 28 chr5 110166338 110166809 -42370450 - MurSatRep1 Unknown Unknown -88 2049 1747 2 1425 10242 137 54 24 chr5 110166845 110168581 -42368678 - MurSatRep1 Unknown Unknown 0 2137 376 2 1425 207 0 0 0 chr5 110168581 110168604 -42368655 + (GA)n Simple_repeat Simple_repeat 2 24 0 2 1425 10242 137 54 24 chr5 110168604 110168634 -42368625 - MurSatRep1 Unknown Unknown -1762 375 317 2 1425 451 271 9 9 chr5 110168638 110168746 -42368513 + PB1D9 SINE Alu 1 108 -12 2 1425 926 151 0 0 chr5 110168747 110168893 -42368366 - MurSatRep1 Unknown Unknown -1991 146 1 2 1425 416 322 99 6 chr5 110168979 110169151 -42368108 + B3 SINE B2 1 188 -28 2 1425 659 197 35 21 chr5 110169422 110169567 -42367692 + B1_Mus2 SINE Alu 1 147 0 2 1425 414 39 0 0 chr5 110169734 110169786 -42367473 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1425 985 237 59 141 chr5 110169886 110170347 -42366912 + RLTR23 LTR ERV1 8 430 0 2 1425 263 331 8 62 chr5 110170347 110170438 -42366821 - ORR1D2 LTR MaLR -286 84 1 2 1425 331 259 17 61 chr5 110170448 110170549 -42366710 - ORR1D2-int LTR MaLR -28 1342 1246 2 1425 1194 120 16 52 chr5 110170549 110170742 -42366517 - B2_Mm2 SINE B2 -8 187 2 2 1425 244 216 25 90 chr5 110170742 110170769 -42366490 - ORR1D2-int LTR MaLR -155 1637 1612 2 1425 3703 214 19 52 chr5 110170795 110171508 -42365751 + Lx6 LINE L1 5137 5826 -1634 2 1425 243 0 0 0 chr5 110171508 110171535 -42365724 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1425 3703 257 54 29 chr5 110171535 110172201 -42365058 + Lx6 LINE L1 5827 6541 -919 2 1425 426 20 0 0 chr5 110172201 110172252 -42365007 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1425 3703 257 54 29 chr5 110172252 110172416 -42364843 + Lx6 LINE L1 6542 6702 -758 2 1425 1135 257 46 61 chr5 110172396 110172561 -42364698 + Lx6 LINE L1 7059 7230 -230 2 1425 4164 160 78 72 chr5 110172561 110173458 -42363801 + RLTR13D6 LTR ERVK 1 902 0 2 1425 1135 257 46 61 chr5 110173458 110173685 -42363574 + Lx6 LINE L1 7231 7445 -15 2 1425 3110 193 54 20 chr5 110173843 110174541 -42362718 - RMER6A LTR ERVK -32 724 3 2 1425 994 233 68 51 chr5 110175261 110175623 -42361636 + RMER16 LTR ERVK 155 513 -20 2 1425 321 285 60 34 chr5 110175868 110176017 -42361242 - L1M2 LINE L1 -539 5752 5600 2 1425 234 0 0 0 chr5 110176499 110176525 -42360734 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1425 343 325 117 33 chr5 110176540 110176874 -42360385 + L1MC LINE L1 4636 4997 -1149 2 1425 357 213 63 187 chr5 110177891 110178129 -42359130 + RMER16 LTR ERVK 1 377 -156 2 1425 567 164 73 113 chr5 110178493 110178644 -42358615 + RMER4A LTR ERVK 322 466 0 2 1425 1142 122 58 10 chr5 110179323 110179530 -42357729 + MusHAL1 LINE L1 1861 2077 -635 2 1425 26 82 0 0 chr5 110179548 110179609 -42357650 + AT_rich Low_complexity Low_complexity 1 61 0 2 1425 201 94 0 0 chr5 110179828 110179860 -42357399 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 3 1425 247 207 0 33 chr5 110181243 110181301 -42355958 + RMER10A LTR ERVL 1 56 -342 3 1425 443 255 29 82 chr5 110181301 110181472 -42355787 - RLTR9A LTR ERVK -3 365 204 3 1425 637 263 65 63 chr5 110181635 110182063 -42355196 + RMER10A LTR ERVL 63 364 -78 3 1425 484 211 69 22 chr5 110182230 110182375 -42354884 - MT2A LTR ERVL 0 533 343 3 1425 286 292 28 19 chr5 110182538 110182646 -42354613 + MT2A LTR ERVL 21 129 -404 3 1425 590 230 6 88 chr5 110182621 110182802 -42354457 + MT2A LTR ERVL 72 237 -296 3 1425 228 135 0 0 chr5 110182802 110182839 -42354420 + (TTC)n Simple_repeat Simple_repeat 2 38 0 3 1425 1207 35 28 0 chr5 110182840 110182981 -42354278 - B1_Mus1 SINE Alu 0 148 4 3 1425 197 65 32 0 chr5 110182985 110183016 -42354243 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 1425 487 252 131 74 chr5 110183016 110183260 -42353999 + MT2A LTR ERVL 322 597 -4 3 1425 334 187 88 0 chr5 110184317 110184408 -42352851 - L1MC LINE L1 -1081 5065 4967 3 1425 1529 117 34 0 chr5 110185014 110185253 -42352006 + RLTR22_Mus LTR ERVK 1 247 -1561 3 1425 3095 66 168 0 chr5 110187176 110187670 -42349589 + RLTR22_Mus LTR ERVK 235 811 -997 3 1425 1671 37 0 21 chr5 110187803 110187996 -42349263 - B2_Mm1a SINE B2 -4 189 1 3 1425 350 294 38 81 chr5 110188164 110188349 -42348910 + RMER12 LTR ERVK 1146 1322 0 3 1425 3631 25 5 0 chr5 110188550 110188944 -42348315 - MTA_Mm LTR MaLR 0 396 1 3 1425 8918 66 6 1 chr5 110188944 110190036 -42347223 - MTA_Mm-int LTR MaLR 0 1098 1 3 1425 3368 42 37 0 chr5 110190036 110190418 -42346841 - MTA_Mm LTR MaLR 0 396 1 3 1425 449 276 98 58 chr5 110191903 110192076 -42345183 + RLTR33 LTR ERVK 447 626 -52 3 1425 327 340 28 73 chr5 110192286 110192341 -42344918 - MurSatRep1 Unknown Unknown -88 2049 1997 3 1425 1316 117 16 16 chr5 110192341 110192532 -42344727 - B2_Mm2 SINE B2 -3 192 2 3 1425 1253 232 20 42 chr5 110192532 110192944 -42344315 - MurSatRep1 Unknown Unknown 0 2137 1747 3 1425 4764 76 10 0 chr5 110192955 110193537 -42343722 - Lx3_Mus LINE L1 0 7009 6422 3 1425 453 219 34 26 chr5 110193538 110193655 -42343604 - MurSatRep1 Unknown Unknown -1872 265 148 3 1425 8861 184 53 31 chr5 110193907 110194777 -42342482 + L1_Mur2 LINE L1 837 1705 -4172 3 1425 1273 99 43 11 chr5 110194777 110194961 -42342298 + B2_Mm2 SINE B2 2 191 -4 3 1425 8861 176 72 32 chr5 110194961 110194989 -42342270 + L1_Mur2 LINE L1 1706 1725 -4152 3 1425 1080 96 0 0 chr5 110194989 110195124 -42342135 + B1_Mus2 SINE Alu 1 135 -12 3 1425 201 39 0 0 chr5 110195125 110195151 -42342108 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1425 8861 176 72 32 chr5 110195151 110196766 -42340493 + L1_Mur2 LINE L1 1726 3438 -2439 3 1425 1818 118 0 33 chr5 110196761 110197067 -42340192 - MusHAL1 LINE L1 -1615 1097 802 3 1425 4586 98 83 8 chr5 110197067 110197728 -42339531 + L1_Mus4 LINE L1 5925 6635 -1 3 1425 491 102 397 23 chr5 110197728 110197852 -42339407 + L1_Mur2 LINE L1 3421 3594 -2283 3 1425 8077 78 3 20 chr5 110197847 110198976 -42338283 - L1_Mm LINE L1 -2980 2903 1795 3 1425 19555 68 3 0 chr5 110198976 110201478 -42335781 + L1_Mm LINE L1 3079 5586 -297 3 1425 8451 51 7 3 chr5 110201478 110202469 -42334790 + L1Md_F2 LINE L1 5587 6581 -1 3 1425 19555 160 58 46 chr5 110202469 110204054 -42333205 + L1_Mm LINE L1 3578 5114 -769 3 1425 560 53 0 13 chr5 110204054 110204131 -42333128 - B1_Mur4 SINE Alu -1 149 74 3 1425 19555 160 58 46 chr5 110204131 110204621 -42332638 + L1_Mm LINE L1 5115 5591 -292 3 1425 614 221 57 192 chr5 110204621 110204991 -42332268 + RLTR46 LTR ERVK 1 320 0 3 1425 8048 149 39 11 chr5 110204991 110205575 -42331684 + Lx4B LINE L1 5535 6133 -925 3 1425 1554 208 17 62 chr5 110205575 110205929 -42331330 + RLTR21 LTR ERVK 289 626 -946 3 1425 412 208 14 0 chr5 110205929 110206001 -42331258 - ETnERV2-int LTR ERVK -264 7142 7070 3 1425 210 37 0 0 chr5 110206022 110206049 -42331210 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3 1425 1813 249 33 91 chr5 110206085 110206689 -42330570 + RLTR1D LTR ERV1 37 605 0 3 1425 778 116 0 0 chr5 110206689 110206801 -42330458 - B1_Mus1 SINE Alu -36 112 1 3 1425 1259 56 0 0 chr5 110206843 110206987 -42330272 + B1_Mus2 SINE Alu 1 144 -3 3 1425 351 0 0 0 chr5 110206989 110207028 -42330231 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3 1425 485 151 0 0 chr5 110207036 110207109 -42330150 - tRNA-Met_ tRNA tRNA -3 73 1 3 1425 249 289 47 55 chr5 110207290 110207418 -42329841 - Tigger15a DNA TcMar -386 329 203 3 1425 47 78 0 21 chr5 110208153 110208296 -42328963 + AT_rich Low_complexity Low_complexity 1 140 0 3 1425 982 147 79 6 chr5 110208619 110208797 -42328462 - B2_Mm2 SINE B2 0 195 5 3 1425 5581 81 6 7 chr5 110209109 110209827 -42327432 + L1_Mus1 LINE L1 5851 6567 0 3 1425 315 268 116 0 chr5 110209934 110210072 -42327187 - MER2 DNA MER2_type -68 277 124 3 1425 308 339 67 8 chr5 110210739 110210767 -42326492 + ID SINE ID 51 85 -139 3 1425 344 369 19 0 chr5 110210767 110210870 -42326389 + PB1D10 SINE Alu 3 107 -10 3 1425 866 129 137 0 chr5 110211065 110211189 -42326070 - B1_Mus1 SINE Alu -7 141 1 3 1425 1661 191 53 18 chr5 110211198 110211539 -42325720 - ORR1B1 LTR MaLR -1 393 41 3 1425 481 343 41 26 chr5 110211556 110212026 -42325233 - MurSatRep1 Unknown Unknown 0 2137 1747 3 1425 386 320 0 19 chr5 110211984 110212140 -42325119 - MMSAT4 Satellite Satellite 0 168 16 3 1425 529 338 24 27 chr5 110212063 110212950 -42324309 - MurSatRep1 Unknown Unknown -88 2049 1681 3 1425 311 341 0 0 chr5 110212827 110212965 -42324294 - MMSAT4 Satellite Satellite 0 168 31 3 1425 9919 135 42 22 chr5 110212993 110214680 -42322579 - MurSatRep1 Unknown Unknown 0 2137 419 3 1425 375 23 0 0 chr5 110214696 110214740 -42322519 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1425 257 348 5 130 chr5 110214740 110214833 -42322426 - ORR1D2 LTR MaLR -208 162 92 3 1425 1036 230 56 142 chr5 110214833 110215299 -42321960 + RLTR23 LTR ERV1 5 430 0 3 1425 257 348 5 130 chr5 110215299 110215390 -42321869 - ORR1D2 LTR MaLR -279 91 1 3 1425 250 304 16 74 chr5 110215390 110215511 -42321748 - ORR1D2-int LTR MaLR -24 1346 1233 3 1425 1148 114 16 49 chr5 110215511 110215696 -42321563 - B2_Mm2 SINE B2 -15 180 2 3 1425 236 262 24 144 chr5 110215696 110215709 -42321550 - ORR1B1-int LTR MaLR -125 1384 1372 3 1425 8280 52 1 0 chr5 110215722 110216970 -42320289 - L1Md_F2 LINE L1 -6 6576 5328 3 1425 1169 62 7 14 chr5 110217000 110217147 -42320112 + B1_Mm SINE Alu 1 146 -1 3 1425 537 312 46 65 chr5 110217160 110217376 -42319883 - MTD LTR MaLR -155 264 53 3 1425 3623 241 29 60 chr5 110217907 110219306 -42317953 + Lx6 LINE L1 5152 6541 -919 3 1425 372 22 0 0 chr5 110219306 110219351 -42317908 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1425 3623 260 46 35 chr5 110219351 110219507 -42317752 + Lx6 LINE L1 6542 6695 -765 3 1425 815 244 24 0 chr5 110219495 110219663 -42317596 + Lx6 LINE L1 7059 7230 -230 3 1425 1152 158 0 5 chr5 110219663 110219847 -42317412 + RLTR13D6 LTR ERVK 1 183 -719 3 1425 635 137 12 2 chr5 110219847 110219980 -42317279 + RLTR13B1 LTR ERVK 132 337 -641 3 1425 7647 50 2 2 chr5 110219980 110220917 -42316342 + L1Md_F3 LINE L1 4650 5586 -297 3 1425 8292 49 16 2 chr5 110220917 110221901 -42315358 + L1Md_F3 LINE L1 5587 6584 0 3 1425 363 242 101 144 chr5 110222495 110222683 -42314576 + RMER16 LTR ERVK 198 377 -156 3 1425 581 157 73 113 chr5 110223069 110223220 -42314039 + RMER4A LTR ERVK 322 466 0 3 1425 1256 111 53 0 chr5 110223909 110224117 -42313142 + MusHAL1 LINE L1 1861 2079 -633 3 1425 25 83 0 0 chr5 110224120 110224180 -42313079 + AT_rich Low_complexity Low_complexity 1 60 0 3 1425 240 35 0 0 chr5 110224403 110224432 -42312827 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1425 479 229 29 82 chr5 110225883 110226054 -42311205 - RLTR9A LTR ERVK -3 365 204 3 1425 767 215 77 9 chr5 110226209 110226430 -42310829 + RMER10A LTR ERVL 63 298 -144 3 1425 299 286 64 123 chr5 110226463 110226650 -42310609 + RMER10B LTR ERVL 202 377 -21 3 1425 495 223 63 28 chr5 110226803 110226978 -42310281 - MT2A LTR ERVL 0 533 310 3 1425 240 35 0 0 chr5 110227050 110227079 -42310180 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 3 1425 234 277 76 38 chr5 110227131 110227198 -42310061 + MT2A LTR ERVL 21 92 -441 3 1425 233 29 29 0 chr5 110227198 110227232 -42310027 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1425 234 277 76 38 chr5 110227232 110227269 -42309990 + MT2A LTR ERVL 93 129 -404 3 1425 622 293 79 125 chr5 110227244 110227499 -42309760 + MT2A LTR ERVL 72 276 -257 3 1425 1258 49 7 0 chr5 110227499 110227643 -42309616 - B1_Mus1 SINE Alu 0 148 4 3 1425 622 293 79 125 chr5 110227643 110227656 -42309603 + MT2A LTR ERVL 277 286 -247 3 1425 507 56 0 0 chr5 110227656 110227727 -42309532 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 3 1425 622 293 79 125 chr5 110227727 110227937 -42309322 + MT2A LTR ERVL 287 529 -4 3 1425 354 243 75 0 chr5 110229402 110229509 -42307750 - L1MC LINE L1 -1065 5081 4967 3 1425 2059 103 6 33 chr5 110230114 110230275 -42306984 + RLTR22_Mus LTR ERVK 1 161 -1647 3 1425 2331 204 118 95 chr5 110230275 110231108 -42306151 + RLTR13A LTR ERVK 4 855 0 3 178 2675 114 10 18 chr5 110231108 110231677 -42305582 + RLTR22_Mus LTR ERVK 162 810 -998 3 1426 253 312 0 0 chr5 110232868 110232948 -42304311 - MurSatRep1 Unknown Unknown -88 2049 1970 3 1426 414 264 80 67 chr5 110233222 110233372 -42303887 + RLTR33 LTR ERVK 447 598 -80 3 1426 278 310 0 0 chr5 110233562 110233662 -42303597 - MMSAT4 Satellite Satellite -26 142 43 3 1426 234 222 19 0 chr5 110233615 110233669 -42303590 - MurSatRep1 Unknown Unknown -88 2049 1995 3 1426 1214 100 76 27 chr5 110233692 110233712 -42303547 - B2_Mm2 SINE B2 0 195 178 3 1426 288 0 0 0 chr5 110233712 110233744 -42303515 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 1426 1214 100 76 27 chr5 110233744 110233908 -42303351 - B2_Mm2 SINE B2 -18 177 4 3 1426 960 274 11 8 chr5 110233951 110234292 -42302967 - MurSatRep1 Unknown Unknown 0 2137 1843 3 1426 1970 84 14 4 chr5 110234292 110234563 -42302696 - LTRIS2 LTR ERV1 0 564 291 3 1426 805 58 0 0 chr5 110234563 110234667 -42302592 + B2_Mm1t SINE B2 1 104 -89 3 1426 441 0 0 0 chr5 110234683 110234732 -42302527 + (TAAA)n Simple_repeat Simple_repeat 1 49 0 3 1426 2039 81 23 23 chr5 110234742 110235046 -42302213 - LTRIS2 LTR ERV1 -260 304 1 3 1426 7017 87 35 2 chr5 110235091 110236018 -42301241 - Lx3_Mus LINE L1 0 7009 6053 3 1426 2381 147 41 55 chr5 110236026 110236465 -42300794 - MurSatRep1 Unknown Unknown -256 1881 1449 3 1426 241 117 16 16 chr5 110236469 110236530 -42300729 + (TTTTTG)n Simple_repeat Simple_repeat 6 66 0 3 1426 1033 93 50 0 chr5 110236532 110236671 -42300588 - B1_Mus2 SINE Alu 0 147 2 3 1426 7341 132 23 11 chr5 110236673 110236871 -42300388 - MurSatRep1 Unknown Unknown -674 1463 1267 3 1426 4613 12 0 0 chr5 110236871 110237353 -42299906 - LTRIS_Mm LTR ERV1 0 482 1 3 1426 7341 132 23 11 chr5 110237353 110238321 -42298938 - MurSatRep1 Unknown Unknown -871 1266 283 3 1426 474 258 60 45 chr5 110238322 110238456 -42298803 + B1_Mur2 SINE Alu 3 138 -11 3 1426 19696 181 39 76 chr5 110238696 110239448 -42297811 + Lx4B LINE L1 827 1574 -4303 3 1426 3035 47 15 68 chr5 110239448 110239858 -42297401 - RLTR10 LTR ERVK -2 388 1 3 1426 19696 154 55 127 chr5 110239858 110239994 -42297265 + Lx4B LINE L1 1575 1709 -4168 3 1426 1383 92 43 0 chr5 110239994 110240179 -42297080 + B2_Mm2 SINE B2 2 194 -1 3 1426 19696 154 55 127 chr5 110240179 110240212 -42297047 + Lx4B LINE L1 1710 1718 -4159 3 1426 1189 89 7 0 chr5 110240212 110240358 -42296901 + B1_Mus2 SINE Alu 1 147 0 3 1426 19696 154 55 127 chr5 110240358 110242286 -42294973 + Lx4B LINE L1 1719 3515 -2362 3 1426 4543 96 85 9 chr5 110242286 110242947 -42294312 + L1_Mus4 LINE L1 5925 6635 -1 4 1426 19696 154 55 127 chr5 110242947 110244307 -42292952 + Lx4B LINE L1 3516 4844 -1033 3 1426 198 0 0 0 chr5 110244307 110244329 -42292930 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4 1426 19696 148 50 81 chr5 110244329 110244629 -42292630 + Lx4B LINE L1 4845 5126 -1932 3 1426 596 39 0 0 chr5 110244629 110244706 -42292553 - B1_Mus2 SINE Alu 0 147 71 4 1426 19696 148 50 81 chr5 110244706 110245777 -42291482 + Lx4B LINE L1 5127 6135 -923 3 1426 2203 205 11 222 chr5 110245777 110246379 -42290880 + RLTR21 LTR ERVK 291 729 -843 4 1426 978 178 17 0 chr5 110246379 110246553 -42290706 - B2_Mm1t SINE B2 -16 177 1 4 1426 2203 205 11 222 chr5 110246553 110246791 -42290468 + RLTR21 LTR ERVK 730 953 -619 4 1426 1026 85 0 0 chr5 110246867 110246997 -42290262 + B1_Mus2 SINE Alu 2 131 -16 4 1426 1496 22 0 6 chr5 110247000 110247181 -42290078 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1426 459 0 0 0 chr5 110247181 110247232 -42290027 + (GAA)n Simple_repeat Simple_repeat 1 51 0 4 1426 474 181 96 15 chr5 110247236 110247371 -42289888 + RLTR21 LTR ERVK 970 1115 -457 4 1426 236 204 88 53 chr5 110247624 110247681 -42289578 + RMER12B LTR ERVK 1346 1404 0 4 1426 524 212 168 119 chr5 110248141 110248451 -42288808 + RLTR12B LTR ERVK 11 335 -193 4 1426 1042 85 35 21 chr5 110248551 110248695 -42288564 + B1_Mm SINE Alu 1 146 -1 4 1426 621 189 74 34 chr5 110249794 110249942 -42287317 - RMER10B LTR ERVL -52 346 193 4 1426 213 94 0 0 chr5 110249960 110249992 -42287267 + (GGAGA)n Simple_repeat Simple_repeat 4 35 0 4 1426 1095 157 41 0 chr5 110250496 110250668 -42286591 + B2_Mm1t SINE B2 1 179 -14 4 1426 283 200 10 0 chr5 110250732 110250793 -42286466 + B2_Mm2 SINE B2 50 114 -102 4 1426 249 33 0 0 chr5 110250817 110250847 -42286412 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 4 1426 570 121 101 0 chr5 110250875 110250974 -42286285 - B2_Mm2 SINE B2 0 195 87 4 1426 281 136 0 0 chr5 110251064 110251108 -42286151 + MTD LTR MaLR 1 44 -375 4 1426 1407 74 5 91 chr5 110251121 110251330 -42285929 + B2_Mm2 SINE B2 1 191 -4 4 1426 733 147 0 0 chr5 110251342 110251458 -42285801 + B2_Mm2 SINE B2 4 119 -76 4 1426 631 274 33 39 chr5 110251624 110251806 -42285453 + B4A SINE B4 1 181 -111 4 1426 285 176 0 0 chr5 110251820 110251894 -42285365 + (TG)n Simple_repeat Simple_repeat 1 74 0 4 1426 620 126 9 43 chr5 110252405 110252521 -42284738 - B2_Mm1a SINE B2 0 193 82 4 1426 493 77 0 0 chr5 110252509 110252574 -42284685 + B2_Mm2 SINE B2 24 88 -107 4 1426 195 69 0 0 chr5 110253044 110253073 -42284186 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4 1426 298 61 20 20 chr5 110253906 110253956 -42283303 + (TA)n Simple_repeat Simple_repeat 1 50 0 4 1426 333 0 0 0 chr5 110253956 110253992 -42283267 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1426 1712 205 64 31 chr5 110254428 110254850 -42282409 - BGLII_B LTR ERVK -2 439 4 4 1426 25 51 0 0 chr5 110255228 110255267 -42281992 + AT_rich Low_complexity Low_complexity 1 39 0 4 1426 320 255 20 80 chr5 110255374 110255480 -42281779 + PB1D10 SINE Alu 6 118 -31 4 1426 1412 86 36 36 chr5 110255727 110255921 -42281338 + B2_Mm2 SINE B2 1 194 -1 4 1426 570 305 62 51 chr5 110256255 110256528 -42280731 - MLT1A0 LTR MaLR -89 276 1 4 1426 357 369 45 15 chr5 110256767 110256899 -42280360 + RSINE1 SINE B4 28 163 -2 4 1426 25 51 0 0 chr5 110256916 110256955 -42280304 + AT_rich Low_complexity Low_complexity 1 39 0 4 1426 469 327 54 141 chr5 110257384 110257825 -42279434 + MER44B DNA MER2_type 145 547 -3 4 1426 206 271 68 0 chr5 110258047 110258106 -42279153 + MIRb SINE MIR 191 253 -15 4 1426 716 229 15 0 chr5 110258483 110258614 -42278645 - ETnERV2-int LTR ERVK -204 7202 7070 4 1426 1072 109 0 7 chr5 110258656 110258803 -42278456 - B1_Mus1 SINE Alu -2 146 1 4 1426 1107 64 28 0 chr5 110258845 110258986 -42278273 + B1_Mm SINE Alu 1 145 -2 4 1426 498 17 0 0 chr5 110258986 110259045 -42278214 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 4 1426 471 134 0 0 chr5 110259059 110259126 -42278133 - tRNA-Met tRNA tRNA -9 67 1 4 1426 266 303 39 47 chr5 110259307 110259435 -42277824 - Tigger15a DNA TcMar -386 329 203 4 1426 61 64 0 21 chr5 110260162 110260305 -42276954 + AT_rich Low_complexity Low_complexity 1 140 0 4 1426 982 147 79 6 chr5 110260607 110260785 -42276474 - B2_Mm2 SINE B2 0 195 5 4 1426 654 92 0 30 chr5 110261035 110261136 -42276123 - BC1_Mm scRNA scRNA -54 98 1 4 1426 536 106 33 64 chr5 110261207 110261344 -42275915 + L1_Mus1 LINE L1 5851 5976 -590 4 1426 290 275 116 0 chr5 110261433 110261571 -42275688 - MER2 DNA MER2_type -68 277 124 4 1426 315 330 66 33 chr5 110262159 110262281 -42274978 + ID_B1 SINE B4 51 176 -48 4 1426 1065 130 0 20 chr5 110262482 110262631 -42274628 - B1_Mus1 SINE Alu -2 146 1 4 1426 927 191 188 87 chr5 110262640 110262938 -42274321 - ORR1A4 LTR MaLR -1 328 1 4 1426 364 357 19 16 chr5 110262974 110263236 -42274023 - MurSatRep1 Unknown Unknown -89 2048 1751 4 1426 371 287 14 14 chr5 110263128 110263266 -42273993 - MMSAT4 Satellite Satellite 0 168 31 4 1426 524 328 42 46 chr5 110263207 110263830 -42273429 - MurSatRep1 Unknown Unknown -1 2136 1724 4 1426 393 316 0 19 chr5 110263806 110263964 -42273295 - MMSAT4 Satellite Satellite 0 168 14 4 1426 10344 196 47 24 chr5 110263885 110266380 -42270879 - MurSatRep1 Unknown Unknown -1 2136 376 4 1426 198 0 0 0 chr5 110266380 110266402 -42270857 + (GA)n Simple_repeat Simple_repeat 2 23 0 4 1426 10344 136 55 22 chr5 110266402 110266431 -42270828 - MurSatRep1 Unknown Unknown -1762 375 318 4 1426 514 222 9 53 chr5 110266435 110266549 -42270710 + PB1D9 SINE Alu 1 109 -11 4 1426 948 130 0 7 chr5 110266549 110266696 -42270563 - MurSatRep1 Unknown Unknown -1991 146 1 4 1426 635 308 23 28 chr5 110266782 110266999 -42270260 + B3 SINE B2 1 216 0 4 1426 353 227 29 39 chr5 110267230 110267356 -42269903 + B1_Mus2 SINE Alu 1 118 -2 4 1426 297 344 55 78 chr5 110267442 110267627 -42269632 - ORR1E LTR MaLR -89 270 89 4 1426 975 230 65 145 chr5 110267627 110268090 -42269169 + RLTR23 LTR ERV1 5 430 0 4 1426 297 344 55 78 chr5 110268090 110268175 -42269084 - ORR1E LTR MaLR -271 88 6 4 1426 349 262 83 76 chr5 110268181 110268291 -42268968 - ORR1E-int LTR MaLR -24 1346 1246 4 1426 1222 109 16 52 chr5 110268291 110268484 -42268775 - B2_Mm2 SINE B2 -8 187 2 4 1426 349 262 83 76 chr5 110268484 110268530 -42268729 - ORR1E-int LTR MaLR -125 1245 1189 4 1426 1171 78 0 0 chr5 110268571 110268713 -42268546 + B1_Mm SINE Alu 1 142 -5 4 1426 333 0 0 0 chr5 110268718 110268755 -42268504 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 4 1426 450 323 43 62 chr5 110268758 110268969 -42268290 - MTD LTR MaLR -161 258 52 4 1426 3701 240 42 56 chr5 110269486 110270868 -42266391 + Lx6 LINE L1 5137 6541 -919 4 1426 336 24 0 0 chr5 110270868 110270909 -42266350 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1426 3701 255 53 37 chr5 110270909 110271065 -42266194 + Lx6 LINE L1 6542 6695 -765 4 1426 856 232 24 0 chr5 110271053 110271221 -42266038 + Lx6 LINE L1 7059 7230 -230 4 1426 3707 159 78 21 chr5 110271221 110271942 -42265317 + RLTR13D6 LTR ERVK 1 762 -140 4 1426 1319 89 61 0 chr5 110272662 110272875 -42264384 + MusHAL1 LINE L1 1861 2086 -626 4 1426 195 42 0 0 chr5 110273155 110273179 -42264080 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1426 247 216 40 13 chr5 110273628 110273703 -42263556 + L1MC LINE L1 4967 5043 -1103 4 1426 181 195 45 68 chr5 110274109 110274153 -42263106 - MER5A DNA MER1_type -73 116 74 4 1426 260 344 8 0 chr5 110274366 110274488 -42262771 - MMSAT4 Satellite Satellite -14 154 32 4 1426 9634 150 44 22 chr5 110274430 110275912 -42261347 - MurSatRep1 Unknown Unknown 0 2137 790 4 1426 4855 120 87 7 chr5 110275912 110276661 -42260598 - RMER17D2 LTR ERVK 0 809 1 4 1426 9634 122 47 24 chr5 110276661 110276965 -42260294 - MurSatRep1 Unknown Unknown -1348 789 483 4 1426 572 83 0 45 chr5 110276965 110277053 -42260206 - B2_Mm2 SINE B2 -111 84 1 4 1426 1843 305 83 86 chr5 110277053 110278104 -42259155 - MTD-int LTR MaLR -125 1245 198 4 1426 2282 69 0 23 chr5 110278109 110278419 -42258840 + LTRIS2 LTR ERV1 2 304 -260 4 1426 315 0 0 0 chr5 110278430 110278465 -42258794 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 4 1426 805 48 0 0 chr5 110278479 110278583 -42258676 - B2_Mm1t SINE B2 -89 104 1 4 1426 1723 78 89 4 chr5 110278583 110278835 -42258424 + LTRIS2 LTR ERV1 291 564 0 4 1426 291 347 34 17 chr5 110278838 110279017 -42258242 - MTD-int LTR MaLR -1176 194 13 4 1426 649 310 86 44 chr5 110279053 110279391 -42257868 - MTD LTR MaLR -16 403 52 4 1426 3940 240 16 55 chr5 110279396 110280308 -42256951 + Lx6 LINE L1 5465 6372 -1088 4 1426 3700 89 87 25 chr5 110280308 110280839 -42256420 + LTRIS2 LTR ERV1 1 564 0 4 1426 3940 251 21 55 chr5 110280839 110281210 -42256049 + Lx6 LINE L1 6373 6703 -757 4 1426 1382 259 38 55 chr5 110281190 110281590 -42255669 + Lx6 LINE L1 7059 7451 -9 4 1426 1159 140 48 0 chr5 110281627 110281813 -42255446 + B2_Mm2 SINE B2 1 195 0 4 1426 1351 214 7 13 chr5 110281955 110282253 -42255006 - RMER6A LTR ERVK -29 727 432 4 1426 846 204 58 16 chr5 110282914 110283103 -42254156 - B3A SINE B2 -1 197 1 4 1426 1441 228 78 56 chr5 110283449 110283695 -42253564 - MTD LTR MaLR -13 406 147 4 1426 1177 82 0 0 chr5 110283695 110283842 -42253417 - B1_Mus1 SINE Alu -1 147 1 4 1426 1441 228 78 56 chr5 110283842 110283990 -42253269 - MTD LTR MaLR -273 146 3 4 1426 341 276 54 0 chr5 110284097 110284209 -42253050 + LTR48 LTR ERV1 685 785 -2 4 1426 1415 307 96 35 chr5 110284211 110284404 -42252855 + Cheshire DNA MER1_type 1400 1571 -849 4 1426 1348 80 57 6 chr5 110284404 110284581 -42252678 - B2_Mm2 SINE B2 -8 187 2 4 1426 1415 307 96 35 chr5 110284581 110285063 -42252196 + Cheshire DNA MER1_type 1572 2116 -304 4 1426 861 99 174 0 chr5 110285092 110285213 -42252046 - B1_Mus2 SINE Alu -5 142 1 4 1426 878 179 14 0 chr5 110285263 110285408 -42251851 + B1_Mur3 SINE Alu 1 147 -2 4 1426 655 246 24 0 chr5 110285434 110285560 -42251699 + RSINE1 SINE B4 1 129 -36 4 1426 396 0 0 0 chr5 110285578 110285622 -42251637 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1426 412 264 0 0 chr5 110286185 110286276 -42250983 + B3A SINE B2 1 91 -107 4 1426 376 269 122 45 chr5 110286420 110286642 -42250617 + Kanga2_a DNA Tc2 136 374 -514 4 1426 180 135 0 0 chr5 110286642 110286679 -42250580 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1426 1215 77 0 0 chr5 110286680 110286823 -42250436 - B1_Mus2 SINE Alu -2 145 3 4 1426 1096 90 0 0 chr5 110287245 110287379 -42249880 + B1_Mus2 SINE Alu 4 137 -10 4 1426 528 84 0 0 chr5 110287379 110287462 -42249797 + (CA)n Simple_repeat Simple_repeat 2 84 0 4 1426 397 296 138 66 chr5 110287477 110287629 -42249630 - RSINE1 SINE B4 0 165 3 5 1426 388 322 99 63 chr5 110287710 110287962 -42249297 - MLT1A0 LTR MaLR -5 360 100 5 1426 1251 118 32 5 chr5 110288008 110288195 -42249064 + B2_Mm2 SINE B2 2 193 -2 5 1426 529 291 65 5 chr5 110288742 110288954 -42248305 - MER2 DNA MER2_type 0 345 121 5 1426 466 137 14 0 chr5 110288954 110289027 -42248232 + B2_Mm2 SINE B2 1 74 -121 5 1426 459 180 39 103 chr5 110289557 110289712 -42247547 + B2_Mm2 SINE B2 51 195 0 5 1426 213 175 0 34 chr5 110290020 110290060 -42247199 + T-rich Low_complexity Low_complexity 20 57 0 5 1426 1305 97 11 6 chr5 110290060 110290237 -42247022 + B2_Mm1t SINE B2 2 179 -14 5 1426 213 175 0 34 chr5 110290237 110290255 -42247004 + T-rich Low_complexity Low_complexity 2 19 0 5 1426 3261 36 0 25 chr5 110290683 110291076 -42246183 + L1Md_F2 LINE L1 6196 6578 -4 5 1426 1093 56 0 14 chr5 110291805 110291950 -42245309 - B2_Mm2 SINE B2 -50 145 3 5 1426 12795 69 11 41 chr5 110293271 110295135 -42242124 + RLTR22_Mus LTR ERVK 1 1808 0 5 1426 268 220 96 46 chr5 110296026 110296177 -42241082 - L1M5 LINE L1 -1043 5103 4949 5 1426 311 338 151 61 chr5 110297274 110297684 -42239575 - L1MC LINE L1 -1149 4997 4551 5 1426 23 33 0 0 chr5 110298025 110298055 -42239204 + AT_rich Low_complexity Low_complexity 1 30 0 5 1426 358 276 84 13 chr5 110298106 110298260 -42238999 + L1M2 LINE L1 5588 5752 -539 5 1426 1684 168 118 41 chr5 110298526 110298916 -42238343 - RMER16 LTR ERVK -1 532 113 5 1426 252 0 0 0 chr5 110299558 110299586 -42237673 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1426 3106 177 83 48 chr5 110299663 110300365 -42236894 + RMER6A LTR ERVK 2 727 -29 5 1426 1483 236 22 68 chr5 110300517 110300907 -42236352 - Lx6 LINE L1 -11 7449 7078 5 1426 3059 68 36 18 chr5 110300907 110301296 -42235963 - MTA_Mm LTR MaLR 0 396 1 5 1426 1483 236 22 68 chr5 110301296 110301315 -42235944 - Lx6 LINE L1 -383 7077 7059 5 1426 3333 254 52 83 chr5 110301303 110301437 -42235822 - Lx6 LINE L1 -764 6696 6562 5 1426 234 0 0 0 chr5 110301437 110301463 -42235796 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1426 3333 227 33 102 chr5 110301463 110302926 -42234333 - Lx6 LINE L1 -899 6561 5137 5 1426 601 344 48 59 chr5 110303427 110303764 -42233495 + MTD LTR MaLR 71 403 -16 5 1426 1417 343 59 51 chr5 110303808 110304142 -42233117 + MTD-int LTR MaLR 24 363 -1007 5 1426 555 49 0 24 chr5 110304142 110304226 -42233033 + L1Md_F2 LINE L1 6501 6582 0 5 1426 1417 343 59 51 chr5 110304226 110304818 -42232441 + MTD-int LTR MaLR 364 958 -412 5 1426 1096 127 17 0 chr5 110304822 110304995 -42232264 + B2_Mm2 SINE B2 13 188 -7 5 1426 307 265 78 10 chr5 110304996 110305099 -42232160 + MTD-int LTR MaLR 1395 1504 -76 5 1426 240 315 17 59 chr5 110305105 110305194 -42232065 + ORR1D2 LTR MaLR 1 84 -286 5 1426 1058 230 55 153 chr5 110305194 110305671 -42231588 - RLTR23 LTR ERV1 0 430 1 5 1426 300 53 0 0 chr5 110305756 110305794 -42231465 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1426 700 183 49 0 chr5 110305958 110306100 -42231159 - B1_Mur3 SINE Alu 0 149 1 5 1426 552 327 14 24 chr5 110306345 110306552 -42230707 - B3 SINE B2 -2 214 10 5 1426 977 113 28 0 chr5 110306631 110306773 -42230486 + MurSatRep1 Unknown Unknown 2 147 -1990 5 1426 446 274 9 9 chr5 110306773 110306880 -42230379 - PB1D9 SINE Alu -12 108 2 5 1426 10150 144 36 46 chr5 110306881 110307062 -42230197 + MurSatRep1 Unknown Unknown 284 453 -1684 5 1426 3145 78 2 12 chr5 110307062 110307462 -42229797 - MTA_Mm LTR MaLR 0 396 1 5 1426 8066 88 34 3 chr5 110307462 110308527 -42228732 - MTA_Mm-int LTR MaLR 0 1098 1 5 1426 3369 58 2 5 chr5 110308527 110308924 -42228335 - MTA_Mm LTR MaLR 0 396 1 5 1426 10150 144 36 46 chr5 110308924 110309855 -42227404 + MurSatRep1 Unknown Unknown 454 1397 -740 5 1426 1221 63 0 0 chr5 110309855 110309998 -42227261 - B1_Mus1 SINE Alu -4 144 2 5 1426 10150 144 36 46 chr5 110309998 110310754 -42226505 + MurSatRep1 Unknown Unknown 1398 2135 -2 5 1426 552 305 36 36 chr5 110310790 110311093 -42226166 + MurSatRep1 Unknown Unknown 1747 2049 -88 5 1426 620 259 3 3 chr5 110311034 110311424 -42225835 + MMSAT4 Satellite Satellite 1 390 0 5 1426 548 329 45 30 chr5 110311378 110311874 -42225385 + MurSatRep1 Unknown Unknown 1747 2004 -133 5 1426 576 246 0 0 chr5 110311874 110312012 -42225247 + MMSAT4 Satellite Satellite 31 168 0 5 1426 548 329 45 30 chr5 110312012 110312266 -42224993 + MurSatRep1 Unknown Unknown 2005 2137 0 5 1426 256 318 15 15 chr5 110312210 110312344 -42224915 + MMSAT4 Satellite Satellite 31 164 -4 5 1426 1668 207 47 9 chr5 110312361 110312702 -42224557 + ORR1B1 LTR MaLR 41 394 0 5 1426 208 284 0 15 chr5 110312791 110312859 -42224400 + CT-rich Low_complexity Low_complexity 5 71 0 5 1426 358 336 18 0 chr5 110312890 110313000 -42224259 - PB1D10 SINE Alu -3 114 3 5 1426 879 147 97 12 chr5 110314339 110314504 -42222755 + B2_Mm2 SINE B2 5 183 -12 5 1426 59 59 0 0 chr5 110314859 110314960 -42222299 + AT_rich Low_complexity Low_complexity 1 101 0 5 1426 233 286 65 21 chr5 110315670 110315763 -42221496 + Tigger15a DNA TcMar 233 329 -386 5 1426 524 111 14 0 chr5 110315944 110316016 -42221243 + tRNA-Met tRNA tRNA 1 73 -3 5 1426 1198 76 0 0 chr5 110316057 110316202 -42221057 + B1_Mus1 SINE Alu 3 147 -1 5 1426 276 299 78 8 chr5 110316276 110316404 -42220855 + Tigger15a DNA TcMar 575 711 -4 5 1426 505 320 198 20 chr5 110316500 110316803 -42220456 - Tigger7 DNA MER2_type -3 2488 2132 5 1426 387 312 78 0 chr5 110316805 110316946 -42220313 - Tigger7 DNA MER2_type -2186 305 154 5 1426 195 342 16 48 chr5 110317199 110317325 -42219934 + MIRb SINE MIR 101 222 -46 5 1426 237 329 111 46 chr5 110317441 110317575 -42219684 - RSINE1 SINE B4 0 165 33 5 1426 537 16 0 0 chr5 110317575 110317637 -42219622 + (TC)n Simple_repeat Simple_repeat 2 63 0 5 1426 237 329 111 46 chr5 110317637 110317655 -42219604 - RSINE1 SINE B4 -133 32 5 5 1426 452 318 56 52 chr5 110317850 110318099 -42219160 + MLT1A0 LTR MaLR 1 250 -115 5 1426 1246 99 87 12 chr5 110318481 110318654 -42218605 - B2_Mm2 SINE B2 -9 186 1 5 1426 252 0 0 0 chr5 110319410 110319438 -42217821 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 5 1426 1165 97 0 0 chr5 110319441 110319585 -42217674 - B1_Mm SINE Alu 0 147 4 5 1426 21 100 0 0 chr5 110319591 110319661 -42217598 + AT_rich Low_complexity Low_complexity 1 70 0 5 1426 3634 42 96 9 chr5 110320393 110320830 -42216429 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1426 3441 68 22 13 chr5 110320832 110321296 -42215963 - IAPEz-int LTR ERVK -2 6479 6012 5 1426 2485 74 225 41 chr5 110321405 110321868 -42215391 + RLTR6_Mm LTR ERV1 37 584 -70 5 1426 2277 57 0 31 chr5 110321868 110322157 -42215102 - IAPEz-int LTR ERVK -466 6015 5736 5 1426 2272 61 0 0 chr5 110322156 110322434 -42214825 - IAPEz-int LTR ERVK -4845 1636 1359 5 1426 3483 79 2 14 chr5 110322434 110323012 -42214247 - IAPEz-int LTR ERVK -5819 662 168 5 1426 231 267 0 0 chr5 110323012 110323057 -42214202 - RLTR27 LTR ERVK -34 275 231 5 1426 492 131 162 0 chr5 110323057 110323156 -42214103 - IAPEz-int LTR ERVK -6358 123 9 5 1426 3669 39 96 9 chr5 110323157 110323594 -42213665 - IAPLTR2_Mm LTR ERVK 0 475 1 5 1426 43 0 0 0 chr5 110324171 110324214 -42213045 + AT_rich Low_complexity Low_complexity 1 43 0 5 1426 325 198 0 67 chr5 110324240 110324359 -42212900 + (TTAGGG)n Simple_repeat Simple_repeat 4 114 0 5 1426 462 72 6 105 chr5 110324372 110324543 -42212716 + (TTAGGG)n Simple_repeat Simple_repeat 4 157 0 5 1426 1154 129 0 6 chr5 110324546 110324725 -42212534 + ORR1A2-int LTR MaLR 1439 1616 -347 5 1426 608 180 0 18 chr5 110324717 110324830 -42212429 + ORR1A2-int LTR MaLR 1853 1963 0 5 1426 2250 112 38 0 chr5 110324830 110325143 -42212116 + ORR1A2 LTR MaLR 1 325 -2 5 1426 1938 189 71 38 chr5 110325144 110325668 -42211591 - L1_Mur3 LINE L1 -4026 1854 1314 5 1426 2262 118 12 3 chr5 110325740 110326079 -42211180 - RLTR9E LTR ERVK -62 347 6 5 1426 17354 173 42 52 chr5 110326096 110327249 -42210010 + ETnERV2-int LTR ERVK 970 3166 -4240 5 1426 1237 75 0 0 chr5 110327249 110327396 -42209863 + B1_Mus2 SINE Alu 1 147 0 5 1426 17354 126 19 24 chr5 110327396 110327809 -42209450 + ETnERV2-int LTR ERVK 3167 3563 -3843 5 1426 1312 34 0 0 chr5 110327809 110327956 -42209303 + B1_Mus1 SINE Alu 2 148 0 5 1426 17354 126 19 24 chr5 110327956 110328325 -42208934 + ETnERV2-int LTR ERVK 3564 3930 -3476 5 1426 180 0 0 0 chr5 110328325 110328345 -42208914 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1426 17354 126 19 24 chr5 110328345 110329567 -42207692 + ETnERV2-int LTR ERVK 3931 5159 -2247 5 1426 7005 18 1 0 chr5 110329567 110330308 -42206951 - RLTR4_Mm LTR ERV1 0 742 1 5 1426 2093 34 0 0 chr5 110330308 110330546 -42206713 - RLTR4_MM-int LTR ERV1 0 7601 7364 5 1426 38297 17 2 2 chr5 110330544 110336292 -42200967 - RLTR4_MM-int LTR ERV1 -1849 5752 1 5 1426 6693 18 1 0 chr5 110336292 110337033 -42200226 - RLTR4_Mm LTR ERV1 0 742 1 5 1426 8946 95 13 13 chr5 110337033 110338298 -42198961 + ETnERV2-int LTR ERVK 5157 6421 -985 5 1426 420 160 0 0 chr5 110338517 110338592 -42198667 + ETnERV2-int LTR ERVK 7331 7405 -1 5 1426 2708 121 10 7 chr5 110338592 110339000 -42198259 + RLTR9E LTR ERVK 1 409 0 5 1426 354 91 0 0 chr5 110339045 110339100 -42198159 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1426 1328 97 5 5 chr5 110339272 110339459 -42197800 - B2_Mm2 SINE B2 -7 188 2 5 1426 697 326 31 0 chr5 110339461 110339749 -42197510 + Cheshire DNA MER1_type 1574 1870 -550 5 1426 435 282 94 6 chr5 110339784 110339955 -42197304 + Cheshire DNA MER1_type 1953 2138 -282 5 1426 941 77 0 0 chr5 110339973 110340103 -42197156 - B1_Mus1 SINE Alu -5 143 14 5 1426 352 200 0 123 chr5 110340003 110340117 -42197142 - MT2B LTR ERVL -337 264 165 5 1426 729 190 13 26 chr5 110340152 110340303 -42196956 + B1_Mur4 SINE Alu 1 149 -1 5 1426 536 287 23 0 chr5 110340328 110340457 -42196802 + RSINE1 SINE B4 1 132 -33 5 1426 309 26 0 0 chr5 110340470 110340508 -42196751 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1426 342 286 0 0 chr5 110341063 110341154 -42196105 + B3A SINE B2 1 91 -107 5 1426 338 313 121 33 chr5 110341286 110341593 -42195666 + Kanga2_a DNA Tc2 136 469 -419 5 1426 21 95 0 0 chr5 110341836 110341899 -42195360 + AT_rich Low_complexity Low_complexity 1 63 0 5 1426 994 101 0 0 chr5 110341908 110342047 -42195212 + B1_Mus2 SINE Alu 6 144 -3 5 1426 422 268 138 66 chr5 110342065 110342217 -42195042 - RSINE1 SINE B4 0 165 3 5 1426 277 305 89 70 chr5 110342295 110342561 -42194698 - MLT1A0 LTR MaLR 0 374 104 5 1426 933 120 125 6 chr5 110342600 110342768 -42194491 + B2_Mm2 SINE B2 3 190 -5 5 1426 36 77 0 0 chr5 110343313 110343391 -42193868 + AT_rich Low_complexity Low_complexity 1 78 0 5 1426 1052 117 0 0 chr5 110344258 110344403 -42192856 + B1_Mus2 SINE Alu 3 147 0 5 1426 1905 161 67 9 chr5 110344528 110344872 -42192387 + ORR1B2 LTR MaLR 1 364 -3 5 1426 252 314 180 14 chr5 110344953 110344986 -42192273 - B4A SINE B4 -40 252 91 5 1426 487 264 0 0 chr5 110344986 110345092 -42192167 - PB1D10 SINE Alu -6 111 6 5 1426 4634 85 8 14 chr5 110345553 110345587 -42191672 - L1Md_F2 LINE L1 -1 6581 6552 5 1426 1394 79 16 5 chr5 110345587 110345778 -42191481 - B2_Mm1a SINE B2 0 193 1 5 1426 4634 85 8 14 chr5 110345778 110346386 -42190873 - L1Md_F2 LINE L1 -31 6551 5944 5 1426 1136 80 23 0 chr5 110346640 110346815 -42190444 - B2_Mm1t SINE B2 0 193 15 5 1426 1684 31 0 0 chr5 110347080 110347273 -42189986 + B2_Mm1t SINE B2 1 193 0 5 1426 1088 95 0 13 chr5 110347549 110347699 -42189560 + B1_Mus1 SINE Alu 1 148 0 5 1426 198 0 0 0 chr5 110347699 110347721 -42189538 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1426 473 81 90 22 chr5 110348707 110348796 -42188463 - B2_Mm1t SINE B2 0 193 99 5 1426 683 83 0 0 chr5 110348908 110349004 -42188255 - B2_Mm2 SINE B2 -98 97 2 5 1426 3133 71 38 2 chr5 110349012 110349437 -42187822 - L1_Mus2 LINE L1 0 6566 6127 5 1426 945 92 30 18 chr5 110349552 110349718 -42187541 - B2_Mm2 SINE B2 0 195 28 5 1426 4478 86 18 6 chr5 110350943 110351617 -42185642 + RLTR22_Mus LTR ERVK 1 682 -1126 5 1426 938 90 8 0 chr5 110351617 110351751 -42185508 - RLTR27 LTR ERVK 0 309 175 6 1426 1688 49 0 0 chr5 110351735 110351960 -42185299 - RLTR10A LTR ERVK -150 261 37 6 1426 1025 104 6 0 chr5 110351968 110352131 -42185128 + RLTR22_Mus LTR ERVK 674 837 -971 5 1426 180 77 0 0 chr5 110353573 110353599 -42183660 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1426 222 62 0 0 chr5 110353768 110353800 -42183459 + (T)n Simple_repeat Simple_repeat 1 32 0 6 1426 25 83 0 0 chr5 110353810 110353870 -42183389 + AT_rich Low_complexity Low_complexity 1 60 0 6 1426 1327 98 83 32 chr5 110353873 110354125 -42183134 - MusHAL1 LINE L1 -633 2079 1815 6 1426 617 134 73 107 chr5 110354767 110354917 -42182342 - RMER4A LTR ERVK 0 466 322 6 1426 343 238 91 103 chr5 110355283 110355531 -42181728 - RMER16 LTR ERVK -156 377 1 6 1426 314 208 51 13 chr5 110357295 110357373 -42179886 - L1MA10 LINE L1 -16 6318 6238 6 1426 295 257 115 42 chr5 110357406 110357528 -42179731 + L1M2 LINE L1 5605 5742 -549 6 1426 474 191 35 0 chr5 110357801 110357916 -42179343 - RMER16 LTR ERVK 0 533 415 6 1426 252 0 0 0 chr5 110357916 110357944 -42179315 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1426 1198 54 0 0 chr5 110357962 110358109 -42179150 - B1_Mus1 SINE Alu 0 148 2 6 1426 522 219 110 18 chr5 110358111 110358274 -42178985 - RMER16 LTR ERVK -253 280 103 6 1426 2537 194 83 47 chr5 110358999 110359165 -42178094 + RMER6A LTR ERVK 1 178 -578 6 1426 1687 11 21 0 chr5 110359165 110359354 -42177905 + B2_Mm1a SINE B2 1 193 0 6 1426 2537 194 83 47 chr5 110359354 110359889 -42177370 + RMER6A LTR ERVK 179 727 -29 6 1426 23 0 0 0 chr5 110360026 110360049 -42177210 + AT_rich Low_complexity Low_complexity 1 23 0 6 1426 1288 256 23 49 chr5 110360058 110360407 -42176852 - Lx6 LINE L1 -61 7399 7060 6 1426 3822 261 37 26 chr5 110360416 110360552 -42176707 - Lx6 LINE L1 -782 6678 6527 6 1426 225 83 0 0 chr5 110360552 110360588 -42176671 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 6 1426 3822 231 26 35 chr5 110360588 110361980 -42175279 - Lx6 LINE L1 -934 6526 5137 6 1426 302 118 78 0 chr5 110362511 110362562 -42174697 - IAPLTR2b LTR ERVK 0 327 273 6 1427 2527 124 7 12 chr5 110362635 110363050 -42174209 - RMER19A LTR ERVK 0 737 325 6 1427 1565 130 138 33 chr5 110363046 110363443 -42173816 - IAPLTR2_Mm LTR ERVK -36 439 1 6 1427 6457 68 12 2 chr5 110363443 110364264 -42172995 - IAPEz-int LTR ERVK 0 6481 5653 6 1427 7583 150 76 76 chr5 110364259 110365920 -42171339 - IAPEz-int LTR ERVK -4781 1700 3 6 1427 1976 133 101 59 chr5 110365922 110366378 -42170881 - IAPLTR2_Mm LTR ERVK 0 475 1 6 1427 300 296 87 120 chr5 110366459 110366609 -42170650 + MTD LTR MaLR 187 331 -88 6 1427 448 302 35 30 chr5 110366690 110366784 -42170475 + ORR1D-int LTR MaLR 1141 1237 -133 6 1427 1239 86 36 31 chr5 110366784 110366977 -42170282 + B2_Mm2 SINE B2 1 194 -1 6 1427 448 302 35 30 chr5 110366977 110367083 -42170176 + ORR1D-int LTR MaLR 1238 1341 -29 6 1427 1187 68 0 0 chr5 110367184 110367331 -42169928 - B1_Mus1 SINE Alu 0 148 2 6 1427 847 238 50 162 chr5 110367361 110367837 -42169422 - RLTR23 LTR ERV1 0 430 8 6 1427 324 0 0 0 chr5 110367924 110367960 -42169299 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1427 629 200 49 14 chr5 110368123 110368265 -42168994 - B1_Mus2 SINE Alu 0 147 1 6 1427 377 82 33 0 chr5 110368269 110368330 -42168929 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 6 1427 573 304 10 24 chr5 110368559 110368768 -42168491 - B3 SINE B2 -1 215 10 6 1427 9188 133 113 99 chr5 110368861 110368999 -42168260 + MurSatRep1 Unknown Unknown 1 147 -1990 6 1427 365 211 133 31 chr5 110368999 110369097 -42168162 - PB1D9 SINE Alu -12 108 1 6 1427 9188 187 92 81 chr5 110369097 110370759 -42166500 + MurSatRep1 Unknown Unknown 148 1536 -601 6 1427 650 144 18 0 chr5 110370759 110370870 -42166389 + PB1D9 SINE Alu 8 120 0 6 1427 9188 187 92 81 chr5 110370870 110371332 -42165927 + MurSatRep1 Unknown Unknown 1537 1922 -215 6 1427 451 278 7 7 chr5 110371332 110371484 -42165775 + MMSAT4 Satellite Satellite 17 168 0 6 1427 9188 187 92 81 chr5 110371484 110371738 -42165521 + MurSatRep1 Unknown Unknown 1923 2137 0 6 1427 501 273 0 0 chr5 110371593 110371806 -42165453 + MMSAT4 Satellite Satellite 1 213 0 6 1427 571 347 42 23 chr5 110371774 110372158 -42165101 + MurSatRep1 Unknown Unknown 1747 2137 0 6 1427 516 247 20 18 chr5 110372102 110372408 -42164851 + MMSAT4 Satellite Satellite 1 306 0 6 1427 495 339 26 29 chr5 110372353 110372438 -42164821 + MurSatRep1 Unknown Unknown 1738 1887 -250 6 1427 511 261 0 7 chr5 110372438 110372577 -42164682 + MMSAT4 Satellite Satellite 31 168 0 6 1427 495 339 26 29 chr5 110372577 110372666 -42164593 + MurSatRep1 Unknown Unknown 1888 2049 -88 6 1427 1386 152 81 59 chr5 110372684 110373006 -42164253 + ORR1A4 LTR MaLR 1 329 0 6 1427 1264 121 10 10 chr5 110373029 110373222 -42164037 + B2_Mm1t SINE B2 1 193 0 6 1427 226 297 53 13 chr5 110373394 110373469 -42163790 - B1F SINE Alu -46 103 26 6 1427 195 254 50 17 chr5 110374166 110374226 -42163033 - L3 LINE CR1 -941 3548 3487 6 1427 1014 88 0 7 chr5 110374859 110375008 -42162251 - B1_Mus1 SINE Alu 0 148 1 6 1427 1283 104 22 0 chr5 110375037 110375220 -42162039 + B2_Mm2 SINE B2 5 191 -4 6 1427 834 167 77 16 chr5 110375222 110375405 -42161854 + B2_Mm2 SINE B2 2 195 0 6 1427 1243 108 11 0 chr5 110375746 110375922 -42161337 + B2_Mm1t SINE B2 2 179 -14 6 1427 26 64 0 0 chr5 110375950 110375997 -42161262 + AT_rich Low_complexity Low_complexity 1 47 0 6 1427 1130 70 0 27 chr5 110376493 110376641 -42160618 + B1_Mm SINE Alu 4 147 0 6 1427 9657 53 2 13 chr5 110376910 110376963 -42160296 + L1Md_F3 LINE L1 4389 4440 -1443 6 1427 1697 11 0 15 chr5 110376963 110377158 -42160101 + B2_Mm1a SINE B2 2 193 0 6 1427 9657 53 2 13 chr5 110377158 110378316 -42158943 + L1Md_F3 LINE L1 4441 5586 -297 6 1427 8218 37 1 6 chr5 110378316 110379305 -42157954 + L1Md_F3 LINE L1 5587 6570 -14 6 1427 1708 176 91 9 chr5 110379442 110379781 -42157478 + ORR1B2 LTR MaLR 1 367 0 6 1427 450 0 0 0 chr5 110379882 110379932 -42157327 + (TTTTA)n Simple_repeat Simple_repeat 5 54 0 6 1427 272 353 29 19 chr5 110379932 110380036 -42157223 - PB1D10 SINE Alu -12 105 1 6 1427 203 189 97 42 chr5 110380361 110380433 -42156826 - MIR SINE MIR 0 262 187 6 1427 298 340 143 0 chr5 110380655 110380802 -42156457 - Tigger7 DNA MER2_type -3 2488 2321 6 1427 669 167 8 31 chr5 110380823 110380953 -42156306 - MTC LTR MaLR -294 127 1 6 1427 1143 130 38 0 chr5 110381001 110381185 -42156074 + B2_Mm2 SINE B2 5 195 0 6 1427 398 210 0 112 chr5 110381382 110381516 -42155743 + RMER10B LTR ERVL 228 346 -52 6 1427 1406 307 59 50 chr5 110381801 110382480 -42154779 + ORR1D-int LTR MaLR 562 1246 -124 6 1427 4673 84 18 82 chr5 110382484 110383284 -42153975 - RMER17A LTR ERVK -3 748 1 6 1427 1085 133 16 0 chr5 110383288 110383476 -42153783 + B2_Mm2 SINE B2 1 191 -4 6 1427 301 252 77 10 chr5 110383475 110383579 -42153680 + ORR1D-int LTR MaLR 1394 1504 -76 6 1427 851 242 49 143 chr5 110383674 110384141 -42153118 - RLTR23 LTR ERV1 0 430 8 6 1427 477 0 0 0 chr5 110384245 110384298 -42152961 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1427 631 190 49 0 chr5 110384467 110384609 -42152650 - B1_Mur3 SINE Alu 0 149 1 6 1427 541 325 10 24 chr5 110384856 110385064 -42152195 - B3 SINE B2 -2 214 10 6 1427 2395 120 149 5 chr5 110385143 110385459 -42151800 + MurSatRep1 Unknown Unknown 2 343 -1794 6 1427 651 67 0 0 chr5 110385459 110385548 -42151711 + (TC)n Simple_repeat Simple_repeat 2 90 0 6 1427 2395 120 149 5 chr5 110385548 110385626 -42151633 + MurSatRep1 Unknown Unknown 344 452 -1685 6 1427 2383 82 3 11 chr5 110385626 110385973 -42151286 - MTA_Mm LTR MaLR 0 396 53 6 1427 303 93 0 0 chr5 110385953 110385996 -42151263 + tRNA-Met tRNA tRNA 31 73 -3 6 1427 1224 61 0 0 chr5 110386035 110386182 -42151077 + B1_Mus1 SINE Alu 1 147 -1 6 1427 351 298 127 38 chr5 110386475 110386632 -42150627 - Tigger7 DNA MER2_type 0 2491 2321 6 1427 265 322 119 33 chr5 110386635 110386786 -42150473 - Tigger7 DNA MER2_type -196 2295 2132 6 1427 323 319 78 0 chr5 110386788 110386929 -42150330 - Tigger7 DNA MER2_type -2186 305 154 6 1427 271 355 54 9 chr5 110387438 110387549 -42149710 - RSINE1 SINE B4 -6 159 44 6 1427 483 18 0 0 chr5 110387561 110387617 -42149642 + (TC)n Simple_repeat Simple_repeat 2 57 0 6 1427 375 318 56 52 chr5 110387830 110388079 -42149180 + MLT1A0 LTR MaLR 1 250 -115 6 1427 1192 100 5 27 chr5 110388455 110388640 -42148619 - B2_Mm2 SINE B2 -14 181 1 6 1427 1100 109 0 0 chr5 110389415 110389562 -42147697 - B1_Mm SINE Alu 0 147 1 6 1427 34 84 0 0 chr5 110389565 110389648 -42147611 + AT_rich Low_complexity Low_complexity 1 83 0 6 1427 21 82 0 0 chr5 110390603 110390652 -42146607 + AT_rich Low_complexity Low_complexity 1 49 0 6 1427 42 0 0 0 chr5 110391216 110391258 -42146001 + AT_rich Low_complexity Low_complexity 1 42 0 6 1427 295 216 0 67 chr5 110391284 110391403 -42145856 + (TTAGGG)n Simple_repeat Simple_repeat 4 114 0 6 1427 462 72 6 105 chr5 110391416 110391587 -42145672 + (TTAGGG)n Simple_repeat Simple_repeat 4 157 0 6 1427 1085 145 6 6 chr5 110391590 110391770 -42145489 + ORR1A2-int LTR MaLR 1439 1618 -345 6 1427 616 171 0 18 chr5 110391761 110391874 -42145385 + ORR1A2-int LTR MaLR 1853 1963 0 6 1427 1994 118 41 13 chr5 110391874 110392192 -42145067 + ORR1A2 LTR MaLR 1 327 0 6 1427 1513 202 93 39 chr5 110392192 110392706 -42144553 - L1_Mur3 LINE L1 -4025 1855 1314 6 1427 2295 113 9 3 chr5 110392778 110393115 -42144144 - RLTR9E LTR ERVK -62 347 9 6 1427 10456 172 39 34 chr5 110393129 110394280 -42142979 + ETnERV2-int LTR ERVK 971 3166 -4240 6 1427 1177 62 0 0 chr5 110394280 110394425 -42142834 + B1_Mus2 SINE Alu 1 145 -2 6 1427 10456 122 21 11 chr5 110394425 110395488 -42141771 + ETnERV2-int LTR ERVK 3167 4244 -3162 6 1427 1523 42 0 5 chr5 110395488 110395677 -42141582 - RLTR10C LTR ERVK 0 436 249 6 1427 32137 41 1 4 chr5 110395680 110396980 -42140279 - MMERVK10C-int LTR ERVK -1024 6557 5270 6 1427 1506 50 0 0 chr5 110396980 110397161 -42140098 + B2_Mm1t SINE B2 2 182 -11 6 1427 32137 41 1 4 chr5 110397161 110399880 -42137379 - MMERVK10C-int LTR ERVK -2312 5269 2552 6 1427 365 65 16 0 chr5 110399886 110399948 -42137311 - MMERVK10C-int LTR ERVK -5634 1947 1885 6 1427 303 238 125 0 chr5 110399940 110400020 -42137239 - MMERVK10C-int LTR ERVK -5110 1027 938 6 1427 717 167 241 36 chr5 110400131 110400375 -42136884 - RMER16-int LTR ERVK -4854 552 312 6 1427 869 163 4 97 chr5 110400462 110400700 -42136559 - MMERVK10C-int LTR ERVK -6629 952 737 6 1427 1212 95 5 32 chr5 110400707 110400977 -42136282 - MMERVK10C-int LTR ERVK -7238 343 1 6 1427 3442 47 31 2 chr5 110400977 110401401 -42135858 - RLTR10C LTR ERVK 0 436 1 6 1427 10538 97 9 1 chr5 110401401 110402882 -42134377 + ETnERV2-int LTR ERVK 4239 5731 -1675 6 1427 1176 34 0 52 chr5 110402899 110403054 -42134205 - B1_Mm SINE Alu 0 147 1 6 1427 316 70 0 0 chr5 110403055 110403098 -42134161 + ETnERV2-int LTR ERVK 5717 5759 -1647 6 1427 4439 152 28 34 chr5 110403098 110404032 -42133227 + L1Md_T LINE L1 278 1205 -5411 6 1427 34894 30 0 0 chr5 110404038 110408455 -42128804 + L1Md_T LINE L1 1170 5586 -297 6 1427 8054 54 0 0 chr5 110408455 110409450 -42127809 + L1Md_T LINE L1 5587 6581 -1 6 1427 3861 86 43 105 chr5 110409450 110410167 -42127092 + ETnERV2-int LTR ERVK 5757 6429 -977 6 1427 379 160 0 0 chr5 110410378 110410453 -42126806 + ETnERV2-int LTR ERVK 7331 7405 -1 6 1427 2440 149 15 7 chr5 110410453 110410859 -42126400 + RLTR9E LTR ERVK 1 409 0 6 1427 486 79 0 0 chr5 110410904 110410980 -42126279 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1427 1159 119 11 5 chr5 110411153 110411339 -42125920 - B2_Mm2 SINE B2 -7 188 2 6 1427 759 309 26 46 chr5 110411339 110411536 -42125723 + Cheshire DNA MER1_type 1572 1773 -647 6 1427 1341 103 5 25 chr5 110411536 110411735 -42125524 + B2_Mm2 SINE B2 1 195 0 6 1427 759 309 26 46 chr5 110411735 110411842 -42125417 + Cheshire DNA MER1_type 1774 1870 -550 6 1427 472 291 37 31 chr5 110411877 110412040 -42125219 + Cheshire DNA MER1_type 1953 2116 -304 6 1427 1035 110 7 0 chr5 110412058 110412204 -42125055 - B1_Mus2 SINE Alu 0 147 1 6 1427 775 197 14 0 chr5 110412254 110412401 -42124858 + B1_Mur4 SINE Alu 1 149 -1 6 1427 577 285 38 0 chr5 110412426 110412584 -42124675 + RSINE1 SINE B4 1 164 -1 6 1427 375 297 0 0 chr5 110413140 110413231 -42124028 + B3A SINE B2 1 91 -107 7 1427 368 349 115 51 chr5 110413363 110413928 -42123331 + Kanga2_a DNA Tc2 136 736 -152 7 1427 1020 85 7 0 chr5 110413990 110414131 -42123128 + B1_Mus2 SINE Alu 6 147 0 7 1427 453 254 138 66 chr5 110414151 110414303 -42122956 - RSINE1 SINE B4 0 165 3 7 1427 389 307 90 67 chr5 110414386 110414641 -42122618 - MLT1A0 LTR MaLR -5 360 100 7 1427 500 302 66 5 chr5 110414858 110415070 -42122189 - MER2 DNA MER2_type 0 345 121 7 1427 518 135 0 0 chr5 110415070 110415144 -42122115 + B2_Mm2 SINE B2 1 74 -121 7 1427 623 109 121 23 chr5 110415655 110415787 -42121472 + B2_Mm2 SINE B2 51 195 0 7 1427 1566 37 5 0 chr5 110416072 110416259 -42121000 + B2_Mm1t SINE B2 2 189 -4 7 1427 42 65 0 0 chr5 110416322 110416399 -42120860 + AT_rich Low_complexity Low_complexity 1 77 0 7 1427 1105 93 0 0 chr5 110417278 110417418 -42119841 + B1_Mus2 SINE Alu 3 142 -5 7 1427 1901 159 67 9 chr5 110417548 110417891 -42119368 + ORR1B2 LTR MaLR 1 363 -4 7 1427 1129 78 0 0 chr5 110417892 110418033 -42119226 + B1_Mus1 SINE Alu 2 142 -6 7 1427 203 0 37 0 chr5 110418034 110418061 -42119198 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 7 1427 293 327 182 19 chr5 110418137 110418190 -42119069 - B4A SINE B4 -17 275 91 7 1427 527 264 0 0 chr5 110418190 110418296 -42118963 - PB1D10 SINE Alu -6 111 6 7 1427 322 345 98 113 chr5 110418443 110418759 -42118500 + Tigger15a DNA TcMar 258 559 -156 7 1427 4564 85 8 6 chr5 110418759 110419386 -42117873 - L1Md_F2 LINE L1 -12 6570 5943 7 1427 322 345 98 113 chr5 110419386 110419529 -42117730 + Tigger15a DNA TcMar 560 710 -5 7 1427 1278 77 22 11 chr5 110419644 110419829 -42117430 - B2_Mm1t SINE B2 -5 188 2 7 1427 266 291 38 19 chr5 110419856 110419961 -42117298 - Tigger7 DNA MER2_type -64 2427 2321 7 1427 1145 88 0 0 chr5 110420362 110420510 -42116749 + B1_Mus1 SINE Alu 1 148 0 7 1427 485 115 92 0 chr5 110421548 110421635 -42115624 - B2_Mm1t SINE B2 0 193 99 7 1427 674 89 10 0 chr5 110421742 110421843 -42115416 - B2_Mm1t SINE B2 -90 103 2 7 1427 3229 60 11 22 chr5 110421850 110422295 -42114964 - L1_Mus2 LINE L1 0 6566 6127 7 1427 943 100 43 18 chr5 110422411 110422574 -42114685 - B2_Mm2 SINE B2 -1 194 28 7 1427 4907 84 4 0 chr5 110423800 110424479 -42112780 + RLTR22_Mus LTR ERVK 1 682 -1126 7 1427 987 90 8 0 chr5 110424479 110424613 -42112646 - RLTR27 LTR ERVK 0 309 175 7 1427 1582 59 22 31 chr5 110424597 110424824 -42112435 - RLTR10A LTR ERVK -150 261 37 7 1427 1065 112 0 0 chr5 110424832 110424993 -42112266 + RLTR22_Mus LTR ERVK 674 834 -974 7 1427 203 186 0 23 chr5 110426344 110426388 -42110871 + CT-rich Low_complexity Low_complexity 3 45 0 7 1427 200 122 24 0 chr5 110426442 110426483 -42110776 + (GAAAA)n Simple_repeat Simple_repeat 1 42 0 7 1427 1082 96 50 63 chr5 110426746 110426968 -42110291 - MusHAL1 LINE L1 -633 2079 1861 7 1427 260 83 21 0 chr5 110427655 110427703 -42109556 - RMER4A LTR ERVK 0 466 418 7 1427 267 189 67 13 chr5 110428038 110428113 -42109146 - L1MA10 LINE L1 -26 6308 6230 7 1427 267 252 145 17 chr5 110428140 110428257 -42109002 + L1M2 LINE L1 5607 5738 -553 7 1427 821 170 16 186 chr5 110428532 110428687 -42108572 - RMER16 LTR ERVK 0 533 408 7 1427 889 80 48 55 chr5 110428687 110428832 -42108427 - B1_Mus1 SINE Alu 0 148 5 7 1427 821 170 16 186 chr5 110428832 110428929 -42108330 - RMER16 LTR ERVK -126 407 324 7 1427 243 146 0 0 chr5 110428947 110428988 -42108271 + (T)n Simple_repeat Simple_repeat 1 41 0 7 1427 1162 55 0 14 chr5 110429033 110429181 -42108078 - B1_Mus1 SINE Alu -1 147 2 7 1427 584 219 110 18 chr5 110429183 110429346 -42107913 - RMER16 LTR ERVK -253 280 103 7 1427 324 178 9 211 chr5 110430071 110430185 -42107074 + RMER6A LTR ERVK 1 91 -665 7 1427 607 222 16 8 chr5 110430181 110430308 -42106951 + RMER6A LTR ERVK 600 727 -29 7 1427 23 0 0 0 chr5 110430445 110430468 -42106791 + AT_rich Low_complexity Low_complexity 1 23 0 7 1427 1181 246 23 49 chr5 110430480 110430826 -42106433 - Lx6 LINE L1 -64 7396 7060 7 1427 3447 255 45 30 chr5 110430835 110430971 -42106288 - Lx6 LINE L1 -782 6678 6519 7 1427 228 100 0 0 chr5 110430971 110431011 -42106248 + (TCTG)n Simple_repeat Simple_repeat 3 42 0 7 1427 3447 226 27 40 chr5 110431011 110432406 -42104853 - Lx6 LINE L1 -942 6518 5137 7 1427 564 308 142 24 chr5 110432866 110433162 -42104097 + MTD LTR MaLR 1 331 -88 7 1427 437 311 29 67 chr5 110433241 110433335 -42103924 + ORR1D-int LTR MaLR 1141 1235 -135 7 1427 1195 79 39 22 chr5 110433335 110433517 -42103742 + B2_Mm2 SINE B2 1 185 -10 7 1427 437 311 29 67 chr5 110433517 110433632 -42103627 + ORR1D-int LTR MaLR 1236 1342 -28 7 1427 236 53 26 0 chr5 110433711 110433749 -42103510 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7 1427 1150 76 0 0 chr5 110433749 110433893 -42103366 - B1_Mus1 SINE Alu -3 145 2 7 1427 988 229 51 152 chr5 110433942 110434370 -42102889 - RLTR23 LTR ERV1 -38 392 8 7 1427 414 0 0 0 chr5 110434457 110434503 -42102756 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1427 606 220 42 7 chr5 110434667 110434809 -42102450 - B1_Mus2 SINE Alu 0 147 1 7 1427 233 111 44 0 chr5 110434810 110434855 -42102404 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 7 1427 656 304 10 24 chr5 110435083 110435292 -42101967 - B3 SINE B2 -1 215 10 7 1427 823 116 65 0 chr5 110435385 110435523 -42101736 + MurSatRep1 Unknown Unknown 1 147 -1990 7 1427 376 211 133 31 chr5 110435523 110435621 -42101638 - PB1D9 SINE Alu -12 108 1 7 1427 9157 135 39 55 chr5 110435621 110437289 -42099970 + MurSatRep1 Unknown Unknown 284 1932 -205 7 1427 730 136 17 8 chr5 110437289 110437408 -42099851 + PB1D9 SINE Alu 1 120 0 7 1427 9157 251 24 36 chr5 110437408 110437878 -42099381 + MurSatRep1 Unknown Unknown 1755 2137 0 7 1427 407 272 10 10 chr5 110437721 110437957 -42099302 + MMSAT4 Satellite Satellite 1 236 0 7 1427 351 335 53 25 chr5 110437926 110438211 -42099048 + MurSatRep1 Unknown Unknown 1845 2137 0 7 1427 465 274 0 0 chr5 110437987 110438279 -42098980 + MMSAT4 Satellite Satellite 1 292 0 7 1427 489 357 10 10 chr5 110438247 110438550 -42098709 + MurSatRep1 Unknown Unknown 1747 2049 -88 7 1427 514 255 14 12 chr5 110438491 110438881 -42098378 + MMSAT4 Satellite Satellite 1 390 0 7 1427 423 333 22 25 chr5 110438826 110438911 -42098348 + MurSatRep1 Unknown Unknown 1738 1887 -250 7 1427 449 268 0 7 chr5 110438911 110439050 -42098209 + MMSAT4 Satellite Satellite 31 168 0 7 1427 423 333 22 25 chr5 110439050 110439140 -42098119 + MurSatRep1 Unknown Unknown 1888 2050 -87 7 1427 1468 159 84 59 chr5 110439156 110439477 -42097782 + ORR1A4 LTR MaLR 1 329 0 7 1427 1140 119 10 46 chr5 110439500 110439694 -42097565 + B2_Mm1t SINE B2 1 187 -6 7 1427 217 254 50 17 chr5 110440634 110440694 -42096565 - L3 LINE CR1 -941 3548 3487 7 1427 459 0 0 0 chr5 110441309 110441360 -42095899 + (TTA)n Simple_repeat Simple_repeat 2 52 0 7 1427 1055 98 0 0 chr5 110441365 110441508 -42095751 - B1_Mus1 SINE Alu -5 143 1 7 1427 989 109 133 0 chr5 110441537 110441702 -42095557 + B2_Mm2 SINE B2 5 191 -4 7 1427 897 131 102 6 chr5 110441704 110441881 -42095378 + B2_Mm2 SINE B2 2 195 0 7 1427 1137 124 17 0 chr5 110442225 110442402 -42094857 + B2_Mm1t SINE B2 2 181 -12 7 1427 28 29 0 0 chr5 110442423 110442458 -42094801 + AT_rich Low_complexity Low_complexity 1 35 0 7 1427 1095 90 0 27 chr5 110442959 110443107 -42094152 + B1_Mm SINE Alu 4 147 0 7 1427 612 0 0 0 chr5 110443118 110443186 -42094073 + (GA)n Simple_repeat Simple_repeat 1 68 0 7 1427 1796 181 91 9 chr5 110443526 110443865 -42093394 + ORR1B2 LTR MaLR 1 367 0 7 1427 319 336 35 17 chr5 110443970 110444085 -42093174 - PB1D10 SINE Alu 0 117 1 7 1427 248 350 50 14 chr5 110444162 110444301 -42092958 + Tigger15a DNA TcMar 191 334 -381 7 1427 214 189 97 42 chr5 110444410 110444482 -42092777 - MIR SINE MIR 0 262 187 7 1427 415 270 50 66 chr5 110444678 110444876 -42092383 - RLTR46 LTR ERVK 0 320 126 7 1427 285 319 14 48 chr5 110444920 110445065 -42092194 - RLTR46 LTR ERVK -180 140 1 7 1427 37135 185 37 22 chr5 110445065 110448491 -42088768 - IAPEY3-int LTR ERVK -351 7329 3947 7 1427 184 221 52 113 chr5 110448491 110448588 -42088671 - L3 LINE CR1 -460 4029 3939 7 1427 37135 185 37 22 chr5 110448588 110452334 -42084925 - IAPEY3-int LTR ERVK -351 3946 247 7 1427 456 249 50 66 chr5 110452643 110452841 -42084418 - RLTR46 LTR ERVK 0 320 126 7 1427 278 345 7 41 chr5 110452885 110453030 -42084229 - RLTR46 LTR ERVK -180 140 1 7 1427 391 306 143 0 chr5 110453061 110453208 -42084051 - Tigger7 DNA MER2_type -3 2488 2321 7 1427 761 135 8 31 chr5 110453229 110453359 -42083900 - MTC LTR MaLR -294 127 1 7 1427 1168 151 27 0 chr5 110453407 110453593 -42083666 + B2_Mm2 SINE B2 5 195 0 7 1427 620 67 0 22 chr5 110454020 110454111 -42083148 + (TCTCCC)n Simple_repeat Simple_repeat 1 89 0 7 1427 7146 99 9 2 chr5 110454465 110455459 -42081800 - L1_Mus1 LINE L1 -300 5583 4583 7 1427 6493 60 4 0 chr5 110455466 110456256 -42081003 + L1_Mus1 LINE L1 5587 6379 -188 7 1427 392 223 29 0 chr5 110456443 110456546 -42080713 + L1MEf LINE L1 2091 2196 -4004 7 1427 1164 97 0 0 chr5 110456558 110456703 -42080556 + B1_Mus1 SINE Alu 2 146 -2 7 1427 1085 90 11 11 chr5 110456727 110456906 -42080353 + (GAA)n Simple_repeat Simple_repeat 2 180 0 7 1427 628 169 8 8 chr5 110456907 110457038 -42080221 + GA-rich Low_complexity Low_complexity 4 134 0 7 1427 1392 56 0 0 chr5 110457038 110457216 -42080043 + (GAA)n Simple_repeat Simple_repeat 3 180 0 7 1427 303 28 0 0 chr5 110457315 110457351 -42079908 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1427 4477 187 89 73 chr5 110457420 110457586 -42079673 - RLTR21 LTR ERVK -453 1119 948 7 1427 186 43 0 0 chr5 110457586 110457609 -42079650 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1427 4477 187 89 73 chr5 110457609 110457710 -42079549 - RLTR21 LTR ERVK -625 947 856 7 1427 1278 54 0 0 chr5 110457710 110457858 -42079401 + B1_Mus1 SINE Alu 1 148 0 7 1427 4477 187 89 73 chr5 110457858 110458691 -42078568 - RLTR21 LTR ERVK -717 855 1 7 1427 342 220 229 0 chr5 110458691 110458798 -42078461 - B3 SINE B2 -83 133 2 7 1427 824 155 81 0 chr5 110458894 110459042 -42078217 + MurSatRep1 Unknown Unknown 1 160 -1977 7 1427 5225 189 98 8 chr5 110459050 110460187 -42077072 - Lx4B LINE L1 -6 7052 5814 7 1427 3069 172 9 9 chr5 110460235 110460861 -42076398 + RMER6A LTR ERVK 57 727 -29 7 1427 1410 253 22 66 chr5 110461011 110461422 -42075837 - Lx6 LINE L1 -9 7451 7059 7 1427 2489 267 92 18 chr5 110461402 110461544 -42075715 - Lx6 LINE L1 -757 6703 6566 7 1427 468 0 0 0 chr5 110461544 110461596 -42075663 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1427 2489 267 92 18 chr5 110461596 110462236 -42075023 - Lx6 LINE L1 -895 6565 5864 7 1427 1296 92 49 0 chr5 110462299 110462483 -42074776 - B2_Mm1t SINE B2 0 193 1 7 1427 2045 109 31 25 chr5 110463136 110463456 -42073803 - RLTRETN_Mm LTR ERVK 0 322 1 7 1427 44 56 0 0 chr5 110463502 110463574 -42073685 + AT_rich Low_complexity Low_complexity 1 72 0 8 1427 21 0 0 0 chr5 110463585 110463606 -42073653 + AT_rich Low_complexity Low_complexity 1 21 0 8 1427 243 88 0 0 chr5 110463917 110463951 -42073308 + (TTA)n Simple_repeat Simple_repeat 3 36 0 8 1427 923 116 34 7 chr5 110463962 110464109 -42073150 - B2_Mm2 SINE B2 -43 152 2 8 1427 1241 95 47 12 chr5 110464114 110464285 -42072974 - B2_Mm2 SINE B2 -14 181 5 8 1427 183 42 0 0 chr5 110464355 110464379 -42072880 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 8 1427 1283 68 0 0 chr5 110464379 110464525 -42072734 - B1_Mus2 SINE Alu 0 147 2 8 1427 309 275 84 0 chr5 110464864 110464995 -42072264 - MER2 DNA MER2_type -80 265 124 8 1427 1376 150 37 4 chr5 110465380 110465621 -42071638 - L1_Mus4 LINE L1 -20 6616 6368 8 1427 360 343 20 0 chr5 110466105 110466207 -42071052 + PB1D10 SINE Alu 3 106 -11 8 1427 208 237 34 0 chr5 110466238 110466297 -42070962 + GA-rich Low_complexity Low_complexity 5 65 0 8 1427 1694 201 47 9 chr5 110466363 110466704 -42070555 - ORR1B1 LTR MaLR 0 394 41 8 1427 344 285 27 13 chr5 110466734 110467020 -42070239 - MMSAT4 Satellite Satellite 0 290 1 8 1427 529 323 37 34 chr5 110467032 110467330 -42069929 - MurSatRep1 Unknown Unknown -88 2049 1751 8 1427 228 270 14 116 chr5 110467302 110467336 -42069923 - MMSAT4 Satellite Satellite -14 154 126 8 1427 1218 56 14 0 chr5 110467336 110467480 -42069779 - B1_Mm SINE Alu -1 146 1 8 1427 503 267 18 43 chr5 110467480 110467761 -42069498 - MMSAT4 Satellite Satellite -43 273 1 8 1427 606 333 47 33 chr5 110467492 110468233 -42069026 - MurSatRep1 Unknown Unknown 0 2137 1739 8 1427 2599 157 30 62 chr5 110468199 110468555 -42068704 - MurSatRep1 Unknown Unknown 0 2137 1787 8 1427 1134 120 102 6 chr5 110468555 110468712 -42068547 + B2_Mm2 SINE B2 2 157 -38 8 1427 234 0 0 0 chr5 110468712 110468738 -42068521 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 8 1427 1134 120 102 6 chr5 110468738 110468756 -42068503 + B2_Mm2 SINE B2 158 193 -2 8 1427 2599 157 30 62 chr5 110468756 110468928 -42068331 - MurSatRep1 Unknown Unknown -351 1786 1626 8 1427 733 103 17 8 chr5 110468928 110469046 -42068213 + B2_Mm2 SINE B2 76 194 -1 8 1427 1428 82 11 0 chr5 110469081 110469263 -42067996 + B2_Mm1t SINE B2 2 185 -8 8 1427 21 36 0 0 chr5 110469273 110469301 -42067958 + AT_rich Low_complexity Low_complexity 1 28 0 8 1427 278 149 21 0 chr5 110469439 110469486 -42067773 + B1_Mus1 SINE Alu 38 85 -63 8 1427 332 175 18 0 chr5 110469785 110469842 -42067417 - B1_Mus1 SINE Alu -84 64 7 8 1427 769 202 31 0 chr5 110470618 110470747 -42066512 + ETnERV2-int LTR ERVK 7070 7202 -204 8 1427 1307 43 0 0 chr5 110471242 110471403 -42065856 + B2_Mm2 SINE B2 1 161 -34 8 1427 270 0 0 0 chr5 110471403 110471433 -42065826 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 8 1427 39 95 0 0 chr5 110471647 110471763 -42065496 + AT_rich Low_complexity Low_complexity 1 116 0 8 1427 1346 114 11 0 chr5 110471771 110471955 -42065304 + B2_Mm1t SINE B2 2 187 -6 8 1427 1182 76 7 0 chr5 110471962 110472106 -42065153 + B1_Mus1 SINE Alu 4 148 0 8 1427 830 176 84 6 chr5 110472468 110472634 -42064625 - B2_Mm2 SINE B2 -12 183 5 8 1427 330 268 150 0 chr5 110473032 110473185 -42064074 - MER2 DNA MER2_type -80 265 90 8 1427 1653 43 0 11 chr5 110473427 110473614 -42063645 + B2_Mm1t SINE B2 2 186 -7 8 1427 296 343 30 0 chr5 110474211 110474310 -42062949 + PB1D10 SINE Alu 5 106 -11 8 1427 242 284 34 0 chr5 110474328 110474416 -42062843 + GA-rich Low_complexity Low_complexity 1 91 0 8 1427 1606 204 46 31 chr5 110474506 110474642 -42062617 - ORR1B1 LTR MaLR 0 394 257 8 1427 1784 21 0 0 chr5 110474642 110474831 -42062428 + B2_Mm1a SINE B2 1 189 -4 8 1427 1606 204 46 31 chr5 110474831 110475043 -42062216 - ORR1B1 LTR MaLR -138 256 41 8 1427 617 338 45 26 chr5 110475059 110475139 -42062120 - MurSatRep1 Unknown Unknown 0 2137 2094 8 1427 370 278 37 15 chr5 110475139 110475274 -42061985 - MMSAT4 Satellite Satellite 0 168 31 8 1427 617 338 45 26 chr5 110475274 110475388 -42061871 - MurSatRep1 Unknown Unknown -44 2093 2032 8 1427 577 252 0 0 chr5 110475388 110475531 -42061728 - MMSAT4 Satellite Satellite 0 168 26 8 1427 617 338 45 26 chr5 110475531 110476157 -42061102 - MurSatRep1 Unknown Unknown 0 2031 1689 8 1427 617 199 14 14 chr5 110476060 110476198 -42061061 - MMSAT4 Satellite Satellite 0 168 31 8 1427 577 325 51 34 chr5 110476142 110476759 -42060500 - MurSatRep1 Unknown Unknown 0 2137 1747 8 1427 4255 156 48 12 chr5 110476730 110477503 -42059756 - MurSatRep1 Unknown Unknown 0 2137 1337 8 1427 1122 101 6 0 chr5 110477505 110477664 -42059595 + B2_Mm1t SINE B2 1 160 -33 8 1427 216 0 0 0 chr5 110477664 110477688 -42059571 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 8 1427 7151 126 88 54 chr5 110477707 110478665 -42058594 - MurSatRep1 Unknown Unknown -792 1345 370 8 1427 267 93 0 0 chr5 110478665 110478708 -42058551 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 8 1427 7151 126 88 54 chr5 110478708 110478788 -42058471 - MurSatRep1 Unknown Unknown -1768 369 338 8 1427 396 0 0 0 chr5 110478788 110478832 -42058427 + (TAG)n Simple_repeat Simple_repeat 3 46 0 8 1427 7151 126 88 54 chr5 110478832 110479093 -42058166 - MurSatRep1 Unknown Unknown -1800 337 1 8 1427 655 302 24 34 chr5 110479170 110479379 -42057880 + B3 SINE B2 10 216 0 8 1427 695 184 57 0 chr5 110479626 110479767 -42057492 + B1_Mur3 SINE Alu 1 149 0 8 1427 315 0 0 0 chr5 110479931 110479966 -42057293 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1427 780 222 161 146 chr5 110480064 110480481 -42056778 + RLTR23 LTR ERV1 8 430 0 8 1427 237 298 35 12 chr5 110480577 110480662 -42056597 - MTE-int LTR MaLR -76 1504 1418 8 1427 25 0 0 0 chr5 110480666 110480691 -42056568 + AT_rich Low_complexity Low_complexity 1 25 0 8 1427 1269 133 11 5 chr5 110480691 110480880 -42056379 + B2_Mm1t SINE B2 2 191 -2 8 1427 25 0 0 0 chr5 110480892 110480917 -42056342 + AT_rich Low_complexity Low_complexity 1 25 0 8 1427 1169 97 7 0 chr5 110480922 110481066 -42056193 + B1_Mus2 SINE Alu 3 147 0 8 1427 190 0 67 0 chr5 110481066 110481096 -42056163 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 8 1427 1519 205 155 31 chr5 110481551 110481897 -42055362 + RMER16 LTR ERVK 70 467 -66 8 1427 1319 92 6 6 chr5 110481897 110481913 -42055346 - B2_Mm1t SINE B2 -19 174 159 8 1427 243 0 0 0 chr5 110481913 110481940 -42055319 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 8 1427 1319 92 6 6 chr5 110481940 110482097 -42055162 - B2_Mm1t SINE B2 -35 158 1 8 1427 1519 205 155 31 chr5 110482097 110482163 -42055096 + RMER16 LTR ERVK 468 533 0 8 1427 315 296 66 15 chr5 110482404 110482541 -42054718 - L1M2 LINE L1 -540 5751 5608 8 1427 369 193 48 12 chr5 110482581 110482665 -42054594 + L1MA10 LINE L1 6230 6316 -18 8 1427 314 344 117 24 chr5 110483052 110483386 -42053873 + L1MC LINE L1 4633 4997 -1149 8 1427 229 114 0 43 chr5 110484505 110484551 -42052708 + B1_Mus2 SINE Alu 104 147 0 8 1427 192 77 0 0 chr5 110484552 110484578 -42052681 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 8 1427 356 207 179 8 chr5 110484609 110484726 -42052533 + RMER16 LTR ERVK 241 377 -156 8 1427 569 179 73 107 chr5 110485079 110485229 -42052030 + RMER4A LTR ERVK 322 466 0 8 1427 829 43 35 0 chr5 110486083 110486199 -42051060 + (TTTTC)n Simple_repeat Simple_repeat 1 120 0 8 1427 258 216 40 13 chr5 110486638 110486713 -42050546 + L1MC LINE L1 4967 5043 -1103 8 1427 9789 115 53 92 chr5 110487677 110488803 -42048456 - RLTR22_Mur LTR ERVK 0 1848 690 8 1427 1267 41 0 26 chr5 110488803 110488954 -42048305 + B1_Mm SINE Alu 1 147 0 8 1427 9789 115 53 92 chr5 110488954 110489026 -42048233 - RLTR22_Mur LTR ERVK -1159 689 682 8 1427 2142 51 0 23 chr5 110489026 110489289 -42047970 + L1Md_F2 LINE L1 6324 6580 -2 8 1427 9789 115 53 92 chr5 110489289 110490011 -42047248 - RLTR22_Mur LTR ERVK -1167 681 1 8 1427 3856 28 31 0 chr5 110490281 110490704 -42046555 - RLTR10C LTR ERVK 0 436 1 8 1427 1501 71 5 16 chr5 110491100 110491286 -42045973 - B2_Mm1t SINE B2 -8 185 2 8 1427 760 90 3 37 chr5 110492074 110492201 -42045058 + B2_Mm2 SINE B2 2 126 -72 8 1427 1045 88 0 0 chr5 110492303 110492440 -42044819 - B1_Mus1 SINE Alu -10 138 2 8 1427 1178 82 129 6 chr5 110492445 110492616 -42044643 - B2_Mm2 SINE B2 -2 193 2 8 1427 412 179 138 28 chr5 110492683 110492790 -42044469 - RLTR44B LTR ERVK 0 449 316 8 178 35272 65 1 4 chr5 110492790 110498188 -42039071 - L1Md_Gf LINE L1 -159 5727 250 8 1428 1443 228 74 74 chr5 110498283 110498418 -42038841 + MTD LTR MaLR 13 146 -273 8 1428 1086 51 72 7 chr5 110498418 110498557 -42038702 + B1_Mus1 SINE Alu 1 148 0 8 1428 1443 228 74 74 chr5 110498557 110498828 -42038431 + MTD LTR MaLR 147 419 0 8 1428 861 205 64 11 chr5 110499164 110499351 -42037908 + B3A SINE B2 1 197 -1 8 1428 21 36 0 0 chr5 110499398 110499426 -42037833 + AT_rich Low_complexity Low_complexity 1 28 0 8 1428 22 56 0 0 chr5 110500492 110500528 -42036731 + AT_rich Low_complexity Low_complexity 1 36 0 1 1428 1247 104 5 86 chr5 110500586 110500796 -42036463 - B2_Mm1a SINE B2 0 193 1 2 1428 1119 285 40 0 chr5 110500805 110501131 -42036128 - L1MB3 LINE L1 -52 6131 5793 3 1428 600 275 47 6 chr5 110501152 110501324 -42035935 - B4 SINE B4 -2 290 112 4 1428 408 20 0 0 chr5 110501388 110501437 -42035822 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1428 1163 106 25 50 chr5 110501453 110501651 -42035608 + B2_Mm2 SINE B2 2 194 -1 6 1428 22 0 0 0 chr5 110501683 110501705 -42035554 + AT_rich Low_complexity Low_complexity 1 22 0 7 1428 1376 254 125 66 chr5 110501789 110502751 -42034508 - L1_Mur3 LINE L1 -1319 4561 3605 8 1428 1210 54 0 0 chr5 110502751 110502898 -42034361 + B1_Mus2 SINE Alu 1 147 0 9 1428 1256 274 131 110 chr5 110502898 110503191 -42034068 - L1_Mur3 LINE L1 -2273 3604 3278 8 1428 410 174 37 0 chr5 110503384 110503493 -42033766 + CT-rich Low_complexity Low_complexity 2 114 0 1 1428 702 0 0 0 chr5 110503500 110503578 -42033681 + (CCCTAA)n Simple_repeat Simple_repeat 4 81 0 1 1428 1506 89 47 0 chr5 110503578 110503814 -42033445 + ORR1A2-int LTR MaLR 1717 1963 0 1 1428 2037 77 27 63 chr5 110503814 110504145 -42033114 + ORR1A2 LTR MaLR 1 319 -8 1 1428 2541 83 26 64 chr5 110504277 110504653 -42032606 + MTB_Mm LTR MaLR 1 367 -40 1 1428 1007 197 162 36 chr5 110504653 110505016 -42032243 + RLTR9E LTR ERVK 1 409 0 1 1428 2541 83 26 64 chr5 110505016 110505062 -42032197 + MTB_Mm LTR MaLR 368 407 0 1 1428 4893 94 36 10 chr5 110505262 110506046 -42031213 - RLTR22_Mur LTR ERVK -1042 806 3 1 1428 186 155 9 85 chr5 110506047 110506153 -42031106 + (CCCTAA)n Simple_repeat Simple_repeat 2 99 0 1 1428 335 306 68 57 chr5 110506472 110506508 -42030751 - MurSatRep1 Unknown Unknown -107 2030 1989 1 1428 1365 173 94 29 chr5 110506508 110506817 -42030442 - ORR1A4 LTR MaLR 0 329 1 1 1428 721 314 41 30 chr5 110506817 110506847 -42030412 - MurSatRep1 Unknown Unknown 0 2137 2123 1 1428 361 299 14 14 chr5 110506847 110506986 -42030273 - MMSAT4 Satellite Satellite 0 168 30 1 1428 721 314 41 30 chr5 110506986 110507751 -42029508 - MurSatRep1 Unknown Unknown 0 2122 1747 1 1428 516 251 11 11 chr5 110507687 110507993 -42029266 - MMSAT4 Satellite Satellite 0 306 1 2 1428 594 312 88 35 chr5 110507934 110508367 -42028892 - MurSatRep1 Unknown Unknown 0 2137 1747 2 1428 457 279 63 10 chr5 110508108 110508398 -42028861 - MMSAT4 Satellite Satellite -1 305 1 2 1428 12560 119 37 23 chr5 110508454 110510471 -42026788 - MurSatRep1 Unknown Unknown -92 2045 2 2 1428 940 62 32 83 chr5 110510534 110510691 -42026568 + B1_Mur4 SINE Alu 2 150 0 2 1428 1130 75 7 0 chr5 110510723 110510869 -42026390 + B1_Mus1 SINE Alu 2 148 0 2 1428 192 77 0 0 chr5 110510869 110510895 -42026364 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1428 541 320 44 29 chr5 110510939 110511145 -42026114 + B3 SINE B2 7 215 -1 2 1428 688 229 14 0 chr5 110511390 110511534 -42025725 + B1_Mus2 SINE Alu 1 146 -1 2 1428 198 167 0 0 chr5 110511710 110511746 -42025513 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1428 1064 58 58 0 chr5 110511840 110511979 -42025280 - B1_Mus2 SINE Alu 0 147 1 3 1428 1067 216 64 134 chr5 110512018 110512473 -42024786 + RLTR23 LTR ERV1 8 430 0 3 1428 1716 287 78 45 chr5 110512570 110513375 -42023884 - ORR1D-int LTR MaLR -7 1363 532 3 1428 726 42 0 0 chr5 110513358 110513454 -42023805 - B1_Mm SINE Alu -21 126 31 3 1428 1266 117 22 9 chr5 110513793 110514003 -42023256 + MusHAL1 LINE L1 1861 2075 -637 3 1428 1148 75 0 0 chr5 110514003 110514150 -42023109 + B1_Mm SINE Alu 1 147 0 3 1428 1266 117 22 9 chr5 110514150 110514163 -42023096 + MusHAL1 LINE L1 2076 2087 -625 3 1428 216 0 0 0 chr5 110514445 110514469 -42022790 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1428 260 189 77 29 chr5 110514930 110515052 -42022207 + L1MC LINE L1 4967 5098 -1048 3 1428 6424 89 34 39 chr5 110515976 110516512 -42020747 - RLTR22_Mus LTR ERVK 0 1808 1270 3 1428 183 100 0 0 chr5 110516512 110516542 -42020717 + (CATA)n Simple_repeat Simple_repeat 3 32 0 3 1428 6424 89 34 39 chr5 110516542 110517076 -42020183 - RLTR22_Mus LTR ERVK -539 1269 745 3 1428 1177 62 7 0 chr5 110517076 110517222 -42020037 + B1_Mm SINE Alu 1 147 0 4 1428 1957 91 0 0 chr5 110517237 110517524 -42019735 - RLTR22_Mus LTR ERVK -1521 287 1 3 1428 1301 86 6 0 chr5 110518217 110518391 -42018868 + B2_Mm1t SINE B2 1 175 -18 4 1428 464 48 0 0 chr5 110518839 110518902 -42018357 - B1_Mus2 SINE Alu -16 131 69 4 1428 1723 21 0 0 chr5 110519332 110519524 -42017735 + B2_Mm1a SINE B2 1 192 -1 4 1428 204 40 0 0 chr5 110519530 110519555 -42017704 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1428 1142 57 6 13 chr5 110519733 110519892 -42017367 + B2_Mm2 SINE B2 1 158 -37 4 1428 198 0 0 0 chr5 110519896 110519918 -42017341 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 4 1428 21 0 0 0 chr5 110519982 110520003 -42017256 + AT_rich Low_complexity Low_complexity 1 21 0 4 1428 286 85 0 41 chr5 110520634 110520683 -42016576 - B1_Mm SINE Alu -7 140 94 4 1428 1617 42 0 10 chr5 110520928 110521122 -42016137 + B2_Mm1a SINE B2 2 193 0 4 1428 637 123 71 104 chr5 110521272 110521426 -42015833 + RMER4A LTR ERVK 316 464 -2 5 1428 1298 111 21 11 chr5 110521722 110521913 -42015346 + B2_Mm2 SINE B2 3 195 0 5 1428 200 31 62 0 chr5 110522386 110522418 -42014841 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 5 1428 767 67 0 0 chr5 110522419 110522524 -42014735 - B1_Mus2 SINE Alu -7 140 36 5 1428 272 164 77 64 chr5 110522455 110522533 -42014726 - RLTR25B LTR ERVK -519 509 431 5 1428 248 230 25 11 chr5 110522957 110523058 -42014201 + L1MC LINE L1 4945 5043 -1103 5 1428 21 36 0 0 chr5 110523240 110523268 -42013991 + GC_rich Low_complexity Low_complexity 1 28 0 5 1428 778 239 70 26 chr5 110523966 110524237 -42013022 + RMER10A LTR ERVL 16 298 -144 5 1428 438 221 139 42 chr5 110524265 110524430 -42012829 + RMER10B LTR ERVL 186 366 -32 5 1428 352 213 7 130 chr5 110524593 110524663 -42012596 - MT2A LTR ERVL 0 533 476 5 1428 1207 41 0 7 chr5 110524663 110524809 -42012450 + B1_Mm SINE Alu 2 146 -1 6 1428 352 213 7 130 chr5 110524809 110524884 -42012375 - MT2A LTR ERVL -58 475 406 5 1428 3905 65 103 62 chr5 110524931 110525187 -42012072 + RLTR22_Mur LTR ERVK 126 387 -1461 6 1428 1136 75 0 26 chr5 110525187 110525324 -42011935 + B1_Mus2 SINE Alu 1 135 -12 6 1428 207 0 0 0 chr5 110525324 110525347 -42011912 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 6 1428 1136 75 0 26 chr5 110525347 110525360 -42011899 + B1_Mus2 SINE Alu 136 147 0 6 1428 3905 65 103 62 chr5 110525360 110525791 -42011468 + RLTR22_Mur LTR ERVK 388 841 -1007 6 1428 2201 108 36 79 chr5 110526548 110526874 -42010385 + RLTR22_Mur LTR ERVK 806 1099 -749 6 1428 932 34 101 0 chr5 110526874 110526993 -42010266 - B1_Mus1 SINE Alu -16 132 2 6 1428 2201 108 36 79 chr5 110526993 110527108 -42010151 + RLTR22_Mur LTR ERVK 1100 1227 -621 6 1428 2478 116 54 25 chr5 110527911 110528319 -42008940 - RLTR9B2 LTR ERVK 0 420 1 6 1428 228 184 0 0 chr5 110528418 110528467 -42008792 + GA-rich Low_complexity Low_complexity 3 51 0 6 1428 282 56 0 0 chr5 110528705 110528741 -42008518 + (GGA)n Simple_repeat Simple_repeat 2 37 0 6 1428 402 94 0 15 chr5 110528926 110528991 -42008268 + RMER19A LTR ERVK 674 737 0 6 1428 308 291 0 28 chr5 110530958 110531064 -42006195 + G-rich Low_complexity Low_complexity 3 105 0 6 1428 1067 89 0 0 chr5 110531785 110531931 -42005328 + B1_Mus2 SINE Alu 2 147 0 7 1428 2858 101 28 16 chr5 110534631 110535063 -42002196 + RLTR9B LTR ERVK 1 437 0 7 1428 333 0 0 0 chr5 110537818 110537855 -41999404 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 1428 190 0 67 0 chr5 110538004 110538034 -41999225 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 7 1428 323 236 14 16 chr5 110538100 110538179 -41999080 + B3 SINE B2 11 88 -107 7 1428 553 226 220 15 chr5 110538307 110538496 -41998763 + B3 SINE B2 8 210 -6 7 1428 1403 61 17 6 chr5 110538514 110538694 -41998565 + B2_Mm2 SINE B2 2 183 -12 7 1428 1059 71 0 0 chr5 110538694 110538835 -41998424 + (GAA)n Simple_repeat Simple_repeat 2 142 0 7 1428 261 0 0 0 chr5 110538835 110538864 -41998395 + (TAG)n Simple_repeat Simple_repeat 1 29 0 7 1428 240 339 84 22 chr5 110539714 110539892 -41997367 + MER92B LTR ERV1 22 210 -426 7 1428 399 57 351 36 chr5 110540030 110540138 -41997121 - B2_Mm2 SINE B2 -7 188 47 8 1428 1375 73 11 0 chr5 110540166 110540344 -41996915 - B2_Mm2 SINE B2 -14 181 2 8 1428 1454 69 0 26 chr5 110540405 110540599 -41996660 - B2_Mm2 SINE B2 -5 190 2 8 1428 610 154 0 0 chr5 110540657 110540761 -41996498 + B1_Mus1 SINE Alu 10 113 -35 8 1428 1552 26 26 16 chr5 110541391 110541583 -41995676 - B2_Mm2 SINE B2 0 195 2 8 1428 589 298 133 37 chr5 110541688 110542012 -41995247 - MER76 LTR ERVL -12 679 325 8 1428 436 265 39 0 chr5 110542611 110542713 -41994546 + B1F SINE Alu 36 141 -8 8 1428 258 32 0 0 chr5 110542741 110542772 -41994487 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 8 1428 630 191 84 0 chr5 110542829 110542960 -41994299 + B1_Mus1 SINE Alu 6 147 -1 8 1428 180 152 0 0 chr5 110542960 110542993 -41994266 + GA-rich Low_complexity Low_complexity 1 33 0 8 1428 1826 128 9 19 chr5 110543031 110543349 -41993910 - RLTR15 LTR ERVK 0 359 45 9 1428 1216 54 0 0 chr5 110543369 110543516 -41993743 - B1_Mus2 SINE Alu 0 147 1 9 1428 375 89 0 0 chr5 110543517 110543573 -41993686 - RLTR15 LTR ERVK -298 61 6 9 1428 2981 204 48 18 chr5 110543579 110544304 -41992955 - MYSERV-int LTR ERVK -5 6545 5799 9 1428 1734 240 27 23 chr5 110544305 110544744 -41992515 - BGLII_B LTR ERVK 0 441 1 9 1428 3269 210 93 58 chr5 110544744 110545708 -41991551 - MYSERV16_I-int LTR ERVK -743 1583 586 9 1428 1664 241 59 28 chr5 110545797 110546305 -41990954 - MYSERV-int LTR ERVK -1832 4718 4195 9 1428 575 214 0 67 chr5 110546419 110546554 -41990705 - B1_Mur3 SINE Alu -6 143 18 9 1428 481 182 114 48 chr5 110546583 110546750 -41990509 - MYSERV6-int LTR ERVK -2285 6674 6497 9 1428 189 0 0 0 chr5 110548070 110548091 -41989168 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1428 1161 62 7 0 chr5 110548091 110548237 -41989022 - B1_Mm SINE Alu 0 147 1 9 1428 306 85 374 18 chr5 110548803 110548910 -41988349 - B2_Mm2 SINE B2 -4 191 47 9 1428 1078 96 6 0 chr5 110548942 110549098 -41988161 - B2_Mm1t SINE B2 -35 158 2 9 1428 294 143 0 0 chr5 110549227 110549290 -41987969 + (T)n Simple_repeat Simple_repeat 1 63 0 1 1428 715 154 0 0 chr5 110549399 110549521 -41987738 - RLTR15 LTR ERVK 0 359 238 1 1428 1961 160 138 49 chr5 110549521 110549727 -41987532 - RLTR20B2 LTR ERVK 0 560 347 1 1428 3176 58 10 2 chr5 110549727 110550124 -41987135 - MTB LTR MaLR 0 400 1 1 1428 1961 160 138 49 chr5 110550124 110550431 -41986828 - RLTR20B2 LTR ERVK -214 346 1 1 1428 1376 119 8 25 chr5 110550431 110550671 -41986588 - RLTR15 LTR ERVK -118 241 6 1 1428 1770 130 3 3 chr5 110550683 110550969 -41986290 + ORR1B1 LTR MaLR 8 293 -101 1 1428 3662 139 79 25 chr5 110550969 110551926 -41985333 - RLTR13D1 LTR ERVK 0 1023 1 1 1428 563 100 77 39 chr5 110551926 110552030 -41985229 + ORR1A4 LTR MaLR 222 329 0 1 1428 241 186 0 0 chr5 110552030 110552071 -41985188 - B1_Mur1 SINE Alu -26 123 83 1 1428 238 191 158 63 chr5 110552079 110552174 -41985085 - PB1D10 SINE Alu -13 104 1 1 1428 313 339 106 25 chr5 110552253 110552537 -41984722 - MLT1F2 LTR MaLR -2 558 252 1 1428 377 250 25 25 chr5 110552786 110552905 -41984354 + MurSatRep1 Unknown Unknown 627 745 -1392 1 1428 806 218 116 5 chr5 110553041 110553067 -41984192 - B3 SINE B2 -5 211 186 1 1428 384 59 0 0 chr5 110553067 110553118 -41984141 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1428 806 218 116 5 chr5 110553118 110553280 -41983979 - B3 SINE B2 -31 185 3 1 1428 447 317 21 0 chr5 110553935 110554077 -41983182 - B1F1 SINE Alu -4 145 1 1 1428 1230 54 0 0 chr5 110554171 110554318 -41982941 - B1_Mm SINE Alu 0 147 1 1 1428 32 57 0 0 chr5 110554324 110554377 -41982882 + AT_rich Low_complexity Low_complexity 1 53 0 1 1428 936 168 0 0 chr5 110554401 110554574 -41982685 + (TA)n Simple_repeat Simple_repeat 1 173 0 1 1428 248 302 0 0 chr5 110554630 110554693 -41982566 + PB1D7 SINE Alu 36 98 -22 1 1428 475 243 103 41 chr5 110554697 110554843 -41982416 + RSINE1 SINE B4 11 165 0 1 1428 249 33 0 0 chr5 110554859 110554889 -41982370 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1428 1187 63 0 0 chr5 110554893 110555035 -41982224 - B1_Mus1 SINE Alu -5 143 2 1 1428 1336 78 6 11 chr5 110555038 110555051 -41982208 - B2_Mm2 SINE B2 -14 181 169 1 1428 189 0 0 0 chr5 110555051 110555072 -41982187 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1428 1336 78 6 11 chr5 110555072 110555240 -41982019 - B2_Mm2 SINE B2 -27 168 1 1 1428 276 276 13 13 chr5 110555328 110555405 -41981854 - B4 SINE B4 -214 78 2 1 1428 198 103 0 0 chr5 110555425 110555454 -41981805 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1 1428 296 219 146 0 chr5 110555454 110555536 -41981723 - PB1D9 SINE Alu -14 106 13 1 1428 1004 108 0 0 chr5 110555539 110555678 -41981581 + B1_Mus1 SINE Alu 3 141 -7 1 1428 223 369 0 19 chr5 110556013 110556118 -41981141 + PB1D10 SINE Alu 14 116 -1 1 1428 420 295 10 10 chr5 110556929 110557280 -41979979 + MMSAT4 Satellite Satellite 1 351 -6 1 1428 539 268 28 29 chr5 110557327 110558053 -41979206 + MMSAT4 Satellite Satellite 1 725 0 1 1428 1440 65 22 0 chr5 110558609 110558794 -41978465 + B2_Mm1t SINE B2 2 190 -3 1 1428 573 236 42 24 chr5 110558924 110559089 -41978170 - L1MA5A LINE L1 -3 6297 6130 1 1428 825 192 0 7 chr5 110559092 110559239 -41978020 - B1_Mur1 SINE Alu -3 146 1 1 1428 617 253 38 6 chr5 110559401 110559584 -41977675 - L1MA5A LINE L1 -385 5912 5724 1 1428 1190 62 0 0 chr5 110560005 110560150 -41977109 + B1_Mm SINE Alu 1 145 -2 1 1428 284 220 0 0 chr5 110560205 110560255 -41977004 + B1_Mus2 SINE Alu 2 51 -96 1 1428 244 236 109 0 chr5 110560206 110560261 -41976998 + ID_B1 SINE B4 84 144 -80 1 1428 401 81 0 16 chr5 110560387 110560450 -41976809 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 1428 1070 7 43 0 chr5 110560603 110560744 -41976515 - B2_Mm1a SINE B2 -6 187 41 1 1428 2009 135 8 35 chr5 110560775 110561143 -41976116 + RLTR9D LTR ERVK 46 403 0 1 1428 208 127 15 31 chr5 110561156 110561221 -41976038 + T-rich Low_complexity Low_complexity 2 65 0 1 1428 403 63 0 45 chr5 110561221 110561287 -41975972 - B1_Mur4 SINE Alu 0 150 88 1 1428 2779 114 56 34 chr5 110561659 110562124 -41975135 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1428 543 222 9 0 chr5 110562320 110562428 -41974831 + B1F SINE Alu 9 117 -32 1 1428 731 240 96 0 chr5 110562565 110562773 -41974486 + ERVL-B4-int LTR ERVL 4324 4551 -1163 1 1428 928 52 0 69 chr5 110563076 110563089 -41974170 - B1_Mm SINE Alu 0 147 137 1 1428 288 0 0 0 chr5 110563089 110563121 -41974138 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 1 1428 928 52 0 69 chr5 110563121 110563251 -41974008 - B1_Mm SINE Alu -11 136 14 1 1428 2675 128 150 25 chr5 110563336 110563856 -41973403 + RLTR33 LTR ERVK 7 591 -87 1 1428 279 255 62 21 chr5 110563935 110564031 -41973228 + RLTR23 LTR ERV1 331 430 0 1 1428 297 0 0 0 chr5 110564168 110564201 -41973058 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1428 452 281 98 26 chr5 110565623 110565857 -41971402 + L1M4 LINE L1 2799 3049 -3097 1 1428 189 0 0 0 chr5 110565975 110565996 -41971263 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1428 798 73 0 0 chr5 110566013 110566123 -41971136 - B1_Mus2 SINE Alu -12 135 26 1 1428 656 259 88 16 chr5 110566219 110566411 -41970848 + B4A SINE B4 9 214 -78 1 1428 192 125 0 0 chr5 110566713 110566745 -41970514 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1428 905 142 0 20 chr5 110566745 110566896 -41970363 - B1_Mur4 SINE Alu 0 150 3 1 1428 2705 136 176 14 chr5 110568140 110568641 -41968618 + RMER4B LTR ERVK 4 585 0 1 1428 226 229 0 0 chr5 110568724 110568772 -41968487 - PB1 SINE Alu -4 123 76 1 1428 32 0 0 0 chr5 110569059 110569091 -41968168 + AT_rich Low_complexity Low_complexity 1 32 0 1 1428 1191 248 105 83 chr5 110569573 110570242 -41967017 - Lx7 LINE L1 -33 7663 6924 1 1428 1640 32 0 5 chr5 110570333 110570524 -41966735 - B2_Mm1a SINE B2 -3 190 1 1 1428 256 273 0 57 chr5 110570656 110570761 -41966498 - PB1D10 SINE Alu -1 116 18 1 1428 1232 41 0 7 chr5 110570887 110571036 -41966223 - B1_Mus1 SINE Alu 0 148 1 1 1428 295 268 178 15 chr5 110571084 110571240 -41966019 - MLT1D LTR MaLR -18 487 197 1 1428 325 368 40 0 chr5 110571464 110571616 -41965643 + MER58A DNA MER1_type 67 224 0 1 1428 429 236 152 20 chr5 110572130 110572281 -41964978 + B3 SINE B2 46 216 0 1 1428 1068 62 20 20 chr5 110573299 110573446 -41963813 - B1_Mus1 SINE Alu 0 148 2 1 1428 21 0 0 0 chr5 110574142 110574163 -41963096 + AT_rich Low_complexity Low_complexity 1 21 0 1 1428 357 212 61 0 chr5 110574275 110574374 -41962885 - L1MB8 LINE L1 -220 5958 5854 1 1428 210 186 23 0 chr5 110575971 110576014 -41961245 + PB1D10 SINE Alu 37 80 -37 1 1428 434 269 13 52 chr5 110576172 110576325 -41960934 + RSINE1 SINE B4 3 149 -16 1 1428 231 61 0 0 chr5 110576341 110576374 -41960885 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1428 664 148 57 36 chr5 110576410 110576550 -41960709 + B1_Mus1 SINE Alu 1 143 -5 1 1428 1394 86 5 0 chr5 110576569 110576755 -41960504 - B2_Mm1a SINE B2 -6 187 1 1 1428 1226 41 0 0 chr5 110576776 110576922 -41960337 - B1_Mm SINE Alu 0 147 2 1 1428 537 240 40 8 chr5 110576960 110577086 -41960173 + B3A SINE B2 1 130 -68 1 1428 608 229 105 56 chr5 110577102 110577426 -41959833 - RLTR15 LTR ERVK -16 343 4 1 1428 1124 109 6 0 chr5 110577431 110577605 -41959654 + B2_Mm2 SINE B2 14 188 -7 1 1428 27 29 0 0 chr5 110577631 110577665 -41959594 + AT_rich Low_complexity Low_complexity 1 34 0 1 1428 194 91 30 0 chr5 110577696 110577729 -41959530 + (GAAA)n Simple_repeat Simple_repeat 2 35 0 1 1428 305 236 42 0 chr5 110577748 110577820 -41959439 + B3 SINE B2 132 206 -10 1 1428 1043 46 0 44 chr5 110577829 110577966 -41959293 + B1_Mus1 SINE Alu 1 131 -17 1 1428 343 144 12 35 chr5 110578377 110578405 -41958854 + polypyrimidine Low_complexity Low_complexity 59 85 0 1 1428 1240 73 11 0 chr5 110578405 110578582 -41958677 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1428 384 22 0 0 chr5 110578582 110578627 -41958632 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 1 1428 353 236 117 124 chr5 110578630 110578775 -41958484 - B1_Mur2 SINE Alu -5 144 1 1 1428 343 144 12 35 chr5 110578775 110578827 -41958432 + polypyrimidine Low_complexity Low_complexity 6 58 0 1 1428 1226 41 7 0 chr5 110578827 110578973 -41958286 - B1_Mus2 SINE Alu 0 147 1 1 1428 186 43 0 0 chr5 110578985 110579008 -41958251 + (TTC)n Simple_repeat Simple_repeat 2 24 0 1 1428 532 234 8 39 chr5 110579147 110579276 -41957983 + RSINE1 SINE B4 3 127 -38 1 1428 320 183 113 0 chr5 110579349 110579420 -41957839 - B1_Mur4 SINE Alu -36 114 36 1 1428 442 314 0 39 chr5 110579451 110579580 -41957679 + ID_B1 SINE B4 79 202 -22 1 1428 306 333 59 8 chr5 110579476 110579594 -41957665 + B1F1 SINE Alu 18 141 -8 1 1428 1313 106 32 0 chr5 110579715 110579904 -41957355 + B2_Mm2 SINE B2 1 195 0 1 1428 812 154 46 0 chr5 110579909 110580039 -41957220 - B1_Mur4 SINE Alu -13 137 2 1 1428 871 158 7 7 chr5 110580285 110580432 -41956827 + B1_Mur2 SINE Alu 3 149 0 1 1428 21 36 0 0 chr5 110581132 110581160 -41956099 + AT_rich Low_complexity Low_complexity 1 28 0 1 1428 1936 191 101 57 chr5 110581588 110582094 -41955165 - RLTR11A LTR ERVK 0 528 1 1 1428 673 191 36 14 chr5 110582539 110582677 -41954582 - B1F1 SINE Alu -8 141 1 1 1428 591 229 8 0 chr5 110582687 110582809 -41954450 - B1_Mur2 SINE Alu -21 128 6 1 1428 22 35 0 0 chr5 110583106 110583135 -41954124 + AT_rich Low_complexity Low_complexity 1 29 0 1 1428 247 234 0 30 chr5 110583137 110583203 -41954056 + ID_B1 SINE B4 158 221 -3 1 1428 274 281 69 17 chr5 110583214 110583330 -41953929 + ID_B1 SINE B4 2 123 -101 1 1428 334 207 46 58 chr5 110584194 110584281 -41952978 + PB1D9 SINE Alu 43 129 -21 2 1428 180 0 0 0 chr5 110584497 110584517 -41952742 + (TC)n Simple_repeat Simple_repeat 2 21 0 2 1428 7696 62 10 59 chr5 110584523 110585207 -41952052 - L1_Mus4 LINE L1 -4 6632 6011 2 1428 1135 95 0 13 chr5 110585207 110585357 -41951902 - B1_Mus1 SINE Alu 0 148 1 2 1428 8434 112 14 26 chr5 110585357 110586814 -41950445 - L1_Mus4 LINE L1 -626 6010 4552 2 1428 394 214 135 10 chr5 110587392 110587496 -41949763 - PB1D10 SINE Alu 0 117 1 2 1428 248 338 13 0 chr5 110588018 110588095 -41949164 + ID4 SINE ID 3 80 -3 2 1428 230 132 0 0 chr5 110589526 110589564 -41947695 + PB1D7 SINE Alu 23 60 -60 2 1428 685 180 21 35 chr5 110589571 110589715 -41947544 + B1_Mur1 SINE Alu 7 148 -1 2 1428 288 77 0 0 chr5 110589830 110589869 -41947390 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1428 419 302 155 0 chr5 110589992 110590108 -41947151 - RSINE1 SINE B4 -6 159 26 2 1428 28 0 0 0 chr5 110590126 110590154 -41947105 + AT_rich Low_complexity Low_complexity 1 28 0 2 1428 3152 274 95 28 chr5 110590311 110591361 -41945898 - Lx7 LINE L1 -361 7335 6215 2 1428 475 273 35 92 chr5 110591368 110591608 -41945651 - B4 SINE B4 -66 226 6 2 1428 399 264 66 0 chr5 110593291 110593397 -41943862 - PB1D10 SINE Alu -1 116 4 2 1428 1068 90 161 0 chr5 110593411 110593566 -41943693 - B2_Mm2 SINE B2 -14 181 2 2 1428 1486 48 27 0 chr5 110593962 110594150 -41943109 - B2_Mm1a SINE B2 0 193 1 2 1428 366 308 19 0 chr5 110594215 110594322 -41942937 + B3 SINE B2 38 146 -70 2 1428 245 137 39 0 chr5 110594347 110594398 -41942861 + GA-rich Low_complexity Low_complexity 2 54 0 2 1428 1011 115 0 0 chr5 110594406 110594563 -41942696 + B2_Mm2 SINE B2 1 157 -38 2 1428 559 181 110 66 chr5 110594603 110594733 -41942526 + B1F2 SINE Alu 2 138 -11 2 1428 210 37 0 0 chr5 110594733 110594760 -41942499 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 2 1428 573 306 111 6 chr5 110595236 110595417 -41941842 - ID_B1 SINE B4 -23 201 2 2 1428 234 0 0 0 chr5 110595820 110595846 -41941413 + (TGG)n Simple_repeat Simple_repeat 1 26 0 2 1428 234 275 23 70 chr5 110596226 110596255 -41941004 + B4A SINE B4 65 89 -203 2 1428 358 278 42 0 chr5 110596255 110596350 -41940909 + B1_Mur3 SINE Alu 3 113 -7 2 1428 838 266 69 0 chr5 110596362 110596550 -41940709 + B3 SINE B2 4 204 -12 2 1428 25 0 0 0 chr5 110596759 110596784 -41940475 + AT_rich Low_complexity Low_complexity 1 25 0 2 1428 577 218 170 6 chr5 110596799 110596970 -41940289 + B3 SINE B2 18 216 0 2 1428 233 245 20 0 chr5 110597544 110597593 -41939666 + B4A SINE B4 22 71 -221 2 1428 237 300 0 0 chr5 110597685 110597745 -41939514 + B3 SINE B2 150 209 -7 2 1428 487 224 18 26 chr5 110597771 110597885 -41939374 + B1_Mus1 SINE Alu 2 113 -36 2 1428 441 274 161 12 chr5 110597883 110598056 -41939203 + B4 SINE B4 83 292 0 2 1428 1066 100 100 2 chr5 110598763 110598949 -41938310 - ORR1A2 LTR MaLR 0 384 137 2 1428 690 108 45 0 chr5 110598932 110599043 -41938216 + B1_Mur4 SINE Alu 35 150 0 2 1428 484 281 27 92 chr5 110599065 110599249 -41938010 + B3A SINE B2 27 198 0 2 1428 28 0 0 0 chr5 110599489 110599517 -41937742 + AT_rich Low_complexity Low_complexity 1 28 0 2 1428 854 235 10 20 chr5 110599540 110599740 -41937519 + B3A SINE B2 1 198 0 2 1428 1147 54 0 33 chr5 110601401 110601553 -41935706 + B1_Mus2 SINE Alu 1 147 0 2 1428 561 29 0 0 chr5 110601584 110601654 -41935605 + B1_Mur4 SINE Alu 71 140 -10 2 1428 732 23 0 0 chr5 110601654 110601740 -41935519 + (GAAA)n Simple_repeat Simple_repeat 2 87 0 2 1428 964 248 101 7 chr5 110601959 110602247 -41935012 - MTEa LTR MaLR -59 320 6 2 1428 1201 54 0 0 chr5 110602932 110603079 -41934180 + B1_Mus2 SINE Alu 1 147 0 2 1428 760 271 32 46 chr5 110603517 110603862 -41933397 - RLTR15 LTR ERVK -16 343 4 2 1428 23 0 0 0 chr5 110604396 110604419 -41932840 + AT_rich Low_complexity Low_complexity 1 23 0 2 1428 361 340 87 20 chr5 110604435 110604585 -41932674 - RSINE1 SINE B4 0 165 6 2 1428 183 247 96 0 chr5 110604655 110604728 -41932531 + L2a LINE L2 3249 3328 -98 2 1428 313 224 210 16 chr5 110604850 110605036 -41932223 + L1MB8 LINE L1 5742 5963 -215 2 1428 249 281 12 12 chr5 110605114 110605197 -41932062 + ID4_ SINE ID 1 83 0 2 1428 378 239 68 68 chr5 110606914 110607031 -41930228 + PB1D10 SINE Alu 1 117 0 2 1428 384 219 114 0 chr5 110607069 110607174 -41930085 + RSINE1 SINE B4 45 161 -4 2 1428 189 0 0 0 chr5 110607436 110607457 -41929802 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1428 1167 36 0 0 chr5 110607457 110607594 -41929665 - B1_Mus2 SINE Alu -10 137 1 2 1428 249 298 63 47 chr5 110607594 110607721 -41929538 - MIRb SINE MIR -109 159 31 2 1428 249 315 39 0 chr5 110608038 110608168 -41929091 - MurSatRep1 Unknown Unknown -1813 324 190 2 1428 875 257 65 26 chr5 110608202 110608434 -41928825 + B4 SINE B4 2 242 -50 2 1428 643 238 42 0 chr5 110609409 110609552 -41927707 - B1_Mur1 SINE Alu 0 149 1 2 1428 282 53 0 0 chr5 110609865 110609874 -41927385 + (T)n Simple_repeat Simple_repeat 1 9 0 2 1428 1243 34 0 0 chr5 110609874 110610021 -41927238 - B1_Mm SINE Alu 0 147 1 2 1428 282 53 0 0 chr5 110610021 110610049 -41927210 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1428 341 221 70 0 chr5 110610248 110610334 -41926925 - MER3 DNA MER1_type -5 204 113 2 1428 350 264 14 0 chr5 110611661 110611733 -41925526 + ID4_ SINE ID 2 74 -9 2 1428 354 244 84 123 chr5 110612484 110612563 -41924696 - B1_Mur2 SINE Alu -1 148 84 2 1428 1616 42 0 20 chr5 110612563 110612759 -41924500 + B2_Mm1a SINE B2 2 193 0 2 1428 354 244 84 123 chr5 110612759 110612833 -41924426 - B1_Mur2 SINE Alu -66 83 1 2 1428 275 274 41 31 chr5 110614025 110614123 -41923136 + PB1D10 SINE Alu 19 117 0 2 1428 374 212 0 0 chr5 110614132 110614198 -41923061 + B3 SINE B2 1 66 -150 2 1428 1166 204 5 0 chr5 110615198 110615409 -41921850 + B3 SINE B2 4 215 -1 2 1428 447 208 49 97 chr5 110617297 110617441 -41919818 + B1F SINE Alu 13 149 0 2 1428 751 67 9 0 chr5 110617537 110617642 -41919617 - B1_Mus2 SINE Alu -2 145 40 2 1428 298 139 95 27 chr5 110617577 110617651 -41919608 - RLTR25B LTR ERVK -519 509 431 2 1428 1594 42 0 20 chr5 110617899 110618094 -41919165 - B2_Mm1a SINE B2 -1 192 2 2 1428 22 0 0 0 chr5 110618298 110618320 -41918939 + AT_rich Low_complexity Low_complexity 1 22 0 2 1428 1413 66 22 11 chr5 110618377 110618562 -41918697 + B2_Mm2 SINE B2 1 187 -8 2 1428 2212 127 131 2 chr5 110619157 110619661 -41917598 - RMER4B LTR ERVK 0 585 17 2 1428 725 225 6 23 chr5 110620236 110620401 -41916858 - ID_B1 SINE B4 -47 245 83 2 1428 546 100 0 0 chr5 110620401 110620481 -41916778 - MTC LTR MaLR 0 421 342 2 1428 1057 184 43 14 chr5 110620474 110620684 -41916575 - MTC LTR MaLR -203 218 3 2 1428 226 316 153 0 chr5 110620738 110620836 -41916423 + PB1 SINE Alu 1 113 -14 2 1428 580 327 60 107 chr5 110621153 110621817 -41915442 - MER82 DNA MER2_type -17 636 4 2 1428 22 0 0 0 chr5 110622912 110622934 -41914325 + AT_rich Low_complexity Low_complexity 1 22 0 2 1428 2731 48 30 6 chr5 110622967 110623305 -41913954 - ORR1A1 LTR MaLR 0 346 1 2 1428 583 328 20 15 chr5 110623352 110623550 -41913709 + B4A SINE B4 84 282 -10 2 1428 2486 100 49 46 chr5 110623912 110624322 -41912937 - IAPLTR2a LTR ERVK 0 411 1 2 178 26885 15 2 0 chr5 110624322 110627272 -41909987 - IAPEz-int LTR ERVK 0 6481 3525 2 1429 1022 78 0 0 chr5 110627272 110627400 -41909859 - IAPEz-int LTR ERVK -2770 4910 4783 2 1429 1852 102 0 0 chr5 110627395 110627641 -41909618 - IAPEz-int LTR ERVK -5183 2497 2252 2 1429 988 59 0 0 chr5 110627642 110627761 -41909498 - IAPEz-int LTR ERVK -5004 1477 1359 2 1429 5019 60 4 55 chr5 110627761 110628450 -41908809 - IAPEz-int LTR ERVK -5819 662 9 2 1429 2439 109 36 53 chr5 110628451 110628869 -41908390 - IAPLTR2a LTR ERVK 0 411 1 2 1429 914 97 28 0 chr5 110628974 110629118 -41908141 - URR1A DNA MER1_type 0 226 79 2 1429 374 273 233 0 chr5 110629188 110629364 -41907895 - ID_B1 SINE B4 -7 217 1 2 1429 546 266 8 0 chr5 110629470 110629598 -41907661 + RSINE1 SINE B4 25 153 -12 2 1429 207 265 0 0 chr5 110629613 110629662 -41907597 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1429 218 347 124 21 chr5 110630003 110630100 -41907159 - ID_B1 SINE B4 -116 108 2 2 1429 557 192 10 0 chr5 110630403 110630502 -41906757 + B3 SINE B2 2 101 -115 2 1429 1167 50 0 12 chr5 110630526 110630688 -41906571 - B2_Mm2 SINE B2 -34 161 2 2 1429 543 177 8 39 chr5 110630689 110630818 -41906441 + B3 SINE B2 86 210 -6 2 1429 988 53 0 0 chr5 110631280 110631411 -41905848 + B1_Mus1 SINE Alu 18 148 0 2 1429 454 70 28 0 chr5 110631411 110631482 -41905777 + (GAAA)n Simple_repeat Simple_repeat 2 74 0 2 1429 345 123 0 0 chr5 110632269 110632334 -41904925 + (T)n Simple_repeat Simple_repeat 1 65 0 2 1429 1625 176 89 3 chr5 110632339 110632675 -41904584 - RMER19A LTR ERVK -152 585 221 2 1429 453 305 112 20 chr5 110633114 110633418 -41903841 + Kanga1 DNA Tc2 200 531 -1214 2 1429 235 267 0 0 chr5 110633617 110633677 -41903582 + ID SINE ID 2 61 -163 2 1429 753 303 22 0 chr5 110634504 110634689 -41902570 - B3 SINE B2 -5 211 23 2 1429 321 247 13 0 chr5 110635383 110635460 -41901799 - PB1D9 SINE Alu 0 120 43 2 1429 323 265 50 10 chr5 110635459 110635558 -41901701 - PB1D7 SINE Alu 0 120 18 2 1429 424 241 0 114 chr5 110635732 110635863 -41901396 - PB1D7 SINE Alu 0 120 5 2 1429 1535 60 0 0 chr5 110636107 110636291 -41900968 + B2_Mm1a SINE B2 1 184 -9 2 1429 617 149 9 0 chr5 110636342 110636449 -41900810 + B1_Mur3 SINE Alu 42 149 0 2 1429 551 94 11 34 chr5 110636853 110636941 -41900318 - B1_Mur3 SINE Alu 0 149 64 3 1429 417 226 11 0 chr5 110636948 110637041 -41900218 + ID_B1 SINE B4 129 222 -2 3 1429 310 287 0 33 chr5 110637069 110637159 -41900100 + PB1D10 SINE Alu 24 110 -7 3 1429 585 281 18 24 chr5 110637170 110637334 -41899925 + RSINE1 SINE B4 3 165 0 3 1429 184 0 97 0 chr5 110637961 110637992 -41899267 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1429 393 122 85 0 chr5 110638012 110638094 -41899165 - L1_Mur3 LINE L1 -522 5358 5270 3 1429 994 71 7 0 chr5 110638095 110638235 -41899024 - B1_Mus1 SINE Alu 0 148 8 3 1429 361 207 58 123 chr5 110638098 110638252 -41899007 - B4A SINE B4 -68 224 81 3 1429 350 263 71 0 chr5 110638655 110638754 -41898505 - PB1D10 SINE Alu -8 109 4 3 1429 2591 165 84 26 chr5 110639403 110639975 -41897284 - MTC-int LTR MaLR -637 621 17 3 1429 1569 147 83 27 chr5 110640355 110640656 -41896603 - MTB_Mm LTR MaLR -89 318 1 3 1429 444 191 32 43 chr5 110640977 110641070 -41896189 - ID_B1 SINE B4 -131 93 2 3 1429 378 223 62 31 chr5 110641649 110641746 -41895513 + B1F SINE Alu 47 146 -3 3 1429 734 80 8 50 chr5 110641907 110642026 -41895233 - B1_Mur3 SINE Alu 0 149 36 3 1429 295 229 60 12 chr5 110642173 110642257 -41895002 - ID_B1 SINE B4 0 224 137 3 1429 696 236 7 7 chr5 110642262 110642407 -41894852 - B1_Mur1 SINE Alu -2 147 3 3 1429 257 215 61 15 chr5 110642410 110642476 -41894783 - PB1D10 SINE Alu -44 73 5 3 1429 21 0 0 0 chr5 110642504 110642525 -41894734 + AT_rich Low_complexity Low_complexity 1 21 0 3 1429 380 369 12 68 chr5 110642526 110642585 -41894674 - RSINE1 SINE B4 -9 156 102 3 1429 2262 187 45 35 chr5 110642585 110642906 -41894353 - RLTR19 LTR ERVK 0 499 186 3 1429 1460 63 20 31 chr5 110642906 110643101 -41894158 - B2_Mm2 SINE B2 0 195 3 3 1429 2262 187 45 35 chr5 110643101 110643271 -41893988 - RLTR19 LTR ERVK -314 185 5 3 1429 380 369 12 68 chr5 110643271 110643374 -41893885 - RSINE1 SINE B4 -64 101 3 3 1429 573 156 111 32 chr5 110643590 110643716 -41893543 - B1_Mur2 SINE Alu -1 148 13 3 1429 538 286 143 23 chr5 110644006 110644264 -41892995 - B4A SINE B4 -1 291 3 3 1429 671 176 86 22 chr5 110644336 110644475 -41892784 - B1_Mur1 SINE Alu -1 148 1 3 1429 276 193 82 9 chr5 110644548 110644658 -41892601 - Lx7 LINE L1 0 7696 7579 3 1429 837 249 172 7 chr5 110644667 110644946 -41892313 - Lx7 LINE L1 -422 7274 6950 3 1429 971 121 0 14 chr5 110645379 110645522 -41891737 + B1_Mur3 SINE Alu 1 141 -8 3 1429 186 43 0 0 chr5 110645525 110645548 -41891711 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1429 1651 37 0 0 chr5 110646286 110646475 -41890784 - B2_Mm1a SINE B2 -3 190 2 3 1429 300 27 0 0 chr5 110646783 110646820 -41890439 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 1429 24 0 0 0 chr5 110647710 110647734 -41889525 + AT_rich Low_complexity Low_complexity 1 24 0 3 1429 281 146 0 35 chr5 110647756 110647813 -41889446 - B2_Mm2 SINE B2 -94 101 47 3 1429 1319 53 47 0 chr5 110647898 110648067 -41889192 - B2_Mm1t SINE B2 -14 179 3 3 1429 830 238 47 0 chr5 110648182 110648375 -41888884 + B3 SINE B2 4 205 -11 3 1429 549 206 19 0 chr5 110648413 110648520 -41888739 + B3A SINE B2 1 109 -89 3 1429 24 23 0 43 chr5 110648676 110648703 -41888556 + AT_rich Low_complexity Low_complexity 1 26 0 3 1429 1203 55 0 0 chr5 110648703 110648849 -41888410 - B1_Mus2 SINE Alu 0 147 2 3 1429 24 23 0 43 chr5 110648849 110648867 -41888392 + AT_rich Low_complexity Low_complexity 1 18 0 3 1429 3707 162 18 3 chr5 110649071 110649683 -41887576 - Lx5 LINE L1 -21 7029 6409 3 1429 343 176 0 42 chr5 110649683 110649754 -41887505 - PB1D10 SINE Alu -38 79 12 3 1429 2718 128 17 19 chr5 110651315 110651777 -41885482 + RMER6B LTR ERVK 1 461 0 3 1429 850 188 0 20 chr5 110652262 110652414 -41884845 + B1_Mur4 SINE Alu 1 149 -1 3 1429 469 264 8 8 chr5 110653473 110653599 -41883660 + ID_B1 SINE B4 94 219 -5 3 1429 234 0 0 0 chr5 110654432 110654458 -41882801 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1429 21 0 0 0 chr5 110655418 110655439 -41881820 + AT_rich Low_complexity Low_complexity 1 21 0 3 1429 491 114 289 0 chr5 110656256 110656370 -41880889 - B1_Mus1 SINE Alu 0 148 2 3 1429 1187 180 157 52 chr5 110656377 110656664 -41880595 - ORR1B2 LTR MaLR -50 317 1 3 1429 267 222 28 0 chr5 110656870 110656942 -41880317 - RMER15 LTR ERVL -96 479 406 3 1429 1606 52 0 0 chr5 110657245 110657436 -41879823 + B2_Mm1a SINE B2 1 191 -2 3 1429 463 122 0 32 chr5 110657445 110657528 -41879731 + L1Md_F2 LINE L1 6493 6573 -9 3 1429 1251 34 0 0 chr5 110657528 110657675 -41879584 + B1_Mm SINE Alu 1 147 0 3 1429 432 0 0 0 chr5 110657778 110657826 -41879433 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1429 186 43 0 0 chr5 110658306 110658329 -41878930 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 3 1429 1253 27 0 0 chr5 110658330 110658476 -41878783 - B1_Mus2 SINE Alu 0 147 2 3 1429 210 150 0 48 chr5 110658494 110658536 -41878723 - PB1D10 SINE Alu -36 81 42 3 1429 1448 74 16 0 chr5 110658592 110658781 -41878478 - B2_Mm2 SINE B2 -3 192 1 3 1429 618 193 95 15 chr5 110658941 110659078 -41878181 - B1_Mur3 SINE Alu -1 148 1 3 1429 247 191 0 0 chr5 110659637 110659684 -41877575 + PB1D7 SINE Alu 1 47 -73 3 1429 204 301 0 28 chr5 110660187 110660293 -41876966 + (CGG)n Simple_repeat Simple_repeat 1 103 0 3 1429 24 53 0 0 chr5 110660644 110660682 -41876577 + AT_rich Low_complexity Low_complexity 1 38 0 3 1429 334 160 13 0 chr5 110660697 110660761 -41876498 - B2_Mm2 SINE B2 -82 116 47 3 1429 985 59 161 13 chr5 110660808 110660963 -41876296 - B2_Mm1t SINE B2 -14 179 2 3 1429 234 250 17 0 chr5 110661192 110661252 -41876007 - ID4 SINE ID -12 71 11 3 1429 196 0 0 105 chr5 110661289 110661327 -41875932 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1429 259 296 164 25 chr5 110661974 110662175 -41875084 + L1MD LINE L1 5436 5664 -578 3 1429 240 170 64 0 chr5 110662193 110662240 -41875019 - PB1D10 SINE Alu -21 96 47 3 1429 339 167 0 0 chr5 110662305 110662371 -41874888 + (TGGG)n Simple_repeat Simple_repeat 3 68 0 3 1429 238 221 145 35 chr5 110662476 110662621 -41874638 + L1MC4a LINE L1 7722 7882 0 3 1429 347 219 57 48 chr5 110662616 110662775 -41874484 - L1MC4 LINE L1 -60 7822 7658 3 1429 287 353 45 19 chr5 110663028 110663184 -41874075 - MIRb SINE MIR -14 254 95 3 1429 1124 89 0 0 chr5 110663974 110664120 -41873139 - B1_Mus2 SINE Alu -1 146 1 3 1429 462 302 8 8 chr5 110664352 110664479 -41872780 + ID_B1 SINE B4 2 128 -96 3 1429 262 333 73 8 chr5 110664531 110664655 -41872604 - B1F SINE Alu -5 144 13 3 1429 22 56 0 0 chr5 110664670 110664706 -41872553 + AT_rich Low_complexity Low_complexity 1 36 0 3 1429 585 246 107 39 chr5 110664929 110665107 -41872152 + B3A SINE B2 2 191 -7 3 1429 374 258 0 33 chr5 110666184 110666276 -41870983 - PB1D10 SINE Alu -7 110 22 3 1429 253 341 12 0 chr5 110666372 110666393 -41870866 + B4A SINE B4 65 86 -206 3 1429 417 221 0 0 chr5 110666393 110666470 -41870789 + PB1D9 SINE Alu 2 78 -42 3 1429 1712 171 67 15 chr5 110667302 110667627 -41869632 - RMER15 LTR ERVL 0 575 234 3 1429 246 137 96 19 chr5 110667627 110667679 -41869580 - ORR1C1 LTR MaLR 0 367 312 3 1429 1063 136 59 11 chr5 110667682 110667868 -41869391 - B2_Mm2 SINE B2 0 195 1 3 1429 310 179 0 0 chr5 110667991 110668047 -41869212 + PB1D10 SINE Alu 33 88 -29 3 1429 322 233 0 0 chr5 110668143 110668203 -41869056 - ID4_ SINE ID -8 75 16 3 1429 1230 34 0 20 chr5 110669018 110669169 -41868090 - B1_Mus1 SINE Alu 0 148 1 3 1429 1883 132 216 43 chr5 110669169 110669408 -41867851 + RMER6A LTR ERVK 2 309 -447 3 1429 1273 102 32 11 chr5 110669408 110669596 -41867663 + B2_Mm1t SINE B2 2 193 0 3 1429 1883 132 216 43 chr5 110669596 110669823 -41867436 + RMER6A LTR ERVK 310 549 -207 3 1429 576 231 38 8 chr5 110669813 110669944 -41867315 - B3 SINE B2 -79 137 3 3 1429 424 228 0 0 chr5 110669952 110670031 -41867228 - ID_B1 SINE B4 -32 192 114 3 1429 761 185 29 7 chr5 110670080 110670216 -41867043 + B1F2 SINE Alu 3 141 -8 3 1429 253 238 257 0 chr5 110670243 110670348 -41866911 - RSINE1 SINE B4 -4 161 30 3 1429 926 231 123 0 chr5 110670379 110670630 -41866629 + Lx5 LINE L1 6694 6975 -75 3 1429 1496 136 0 13 chr5 110670644 110670868 -41866391 + URR1B DNA MER1_type 5 225 0 3 1429 267 317 0 12 chr5 110671350 110671433 -41865826 + (TGG)n Simple_repeat Simple_repeat 2 83 0 3 1429 797 156 8 0 chr5 110672326 110672454 -41864805 - B3 SINE B2 -87 129 1 3 1429 1362 123 0 5 chr5 110672550 110672746 -41864513 - B2_Mm2 SINE B2 0 195 1 3 1429 770 203 113 59 chr5 110672835 110673039 -41864220 - B3 SINE B2 0 216 2 3 1429 396 257 66 136 chr5 110673096 110673132 -41864127 + B3A SINE B2 2 27 -171 3 1429 525 217 26 0 chr5 110673132 110673247 -41864012 + PB1D9 SINE Alu 2 119 -1 3 1429 396 257 66 136 chr5 110673247 110673408 -41863851 + B3A SINE B2 28 185 -13 3 1429 218 359 11 0 chr5 110674050 110674142 -41863117 + CT-rich Low_complexity Low_complexity 3 95 0 3 1429 1771 175 38 30 chr5 110674145 110674516 -41862743 - RLTR14 LTR ERV1 -8 374 1 3 1429 1986 99 53 25 chr5 110674839 110675159 -41862100 - ORR1A4 LTR MaLR 0 329 1 3 1429 327 25 0 0 chr5 110675661 110675701 -41861558 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 4 1429 650 191 312 0 chr5 110675701 110675858 -41861401 - B3 SINE B2 -10 206 1 4 1429 1236 41 7 0 chr5 110675903 110676049 -41861210 - B1_Mus2 SINE Alu 0 147 1 4 1429 270 206 59 0 chr5 110676142 110676210 -41861049 - ID4_ SINE ID -10 73 2 4 1429 793 201 0 7 chr5 110676541 110676686 -41860573 - B1_Mur2 SINE Alu -1 148 5 4 1429 417 291 28 16 chr5 110676709 110676884 -41860375 - B3 SINE B2 -1 215 35 4 1429 216 0 0 0 chr5 110676925 110676949 -41860310 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1429 573 302 28 23 chr5 110676950 110677126 -41860133 - ID_B1 SINE B4 -15 209 33 4 1429 474 18 0 0 chr5 110677141 110677196 -41860063 + (CATA)n Simple_repeat Simple_repeat 2 56 0 4 1429 255 61 0 0 chr5 110677196 110677229 -41860030 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1429 207 0 0 0 chr5 110677240 110677263 -41859996 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1429 1225 41 7 0 chr5 110677272 110677418 -41859841 - B1_Mm SINE Alu 0 147 1 4 1429 423 0 0 0 chr5 110677820 110677867 -41859392 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1429 183 42 0 0 chr5 110678680 110678704 -41858555 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1429 1153 57 0 0 chr5 110678704 110678844 -41858415 - B1_Mus1 SINE Alu -8 140 1 4 1429 381 284 58 33 chr5 110679203 110679323 -41857936 + PB1 SINE Alu 1 123 -4 4 1429 21 0 0 31 chr5 110679887 110679906 -41857353 + AT_rich Low_complexity Low_complexity 1 19 0 4 1429 1668 22 0 0 chr5 110679906 110680091 -41857168 + B2_Mm1t SINE B2 1 185 -8 4 1429 21 0 0 31 chr5 110680091 110680103 -41857156 + AT_rich Low_complexity Low_complexity 1 12 0 4 1429 192 40 0 0 chr5 110680447 110680472 -41856787 + (GTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1429 225 0 0 0 chr5 110681432 110681457 -41855802 + (TA)n Simple_repeat Simple_repeat 1 25 0 4 1429 336 48 0 0 chr5 110681457 110681498 -41855761 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1429 1120 55 0 64 chr5 110681522 110681679 -41855580 - B1_Mus2 SINE Alu 0 147 1 4 1429 1316 108 38 0 chr5 110684206 110684392 -41852867 + B2_Mm2 SINE B2 3 195 0 4 1429 715 154 8 23 chr5 110684808 110684941 -41852318 + B1_Mus2 SINE Alu 17 147 0 4 1429 201 74 0 0 chr5 110684995 110685022 -41852237 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1429 341 224 174 0 chr5 110685354 110685452 -41851807 - RSINE1 SINE B4 -48 117 3 4 1429 1228 41 0 7 chr5 110686100 110686248 -41851011 + B1_Mus2 SINE Alu 1 147 0 4 1429 1178 68 0 0 chr5 110686500 110686647 -41850612 + B1_Mus1 SINE Alu 2 148 0 4 1429 1374 82 38 0 chr5 110686866 110687050 -41850209 - B2_Mm2 SINE B2 -4 191 1 4 1429 1273 46 107 17 chr5 110687280 110687457 -41849802 + B2_Mm2 SINE B2 2 194 -1 4 1429 316 315 56 0 chr5 110688323 110688431 -41848828 + PB1D10 SINE Alu 4 117 0 4 1429 283 252 15 32 chr5 110688580 110688675 -41848584 - PB1D10 SINE Alu -18 99 6 4 1429 1408 85 16 0 chr5 110689820 110690008 -41847251 + B2_Mm1a SINE B2 3 193 0 4 1429 405 132 0 29 chr5 110690008 110690070 -41847189 - B1_Mus2 SINE Alu -13 134 74 4 1429 396 298 48 8 chr5 110690130 110690255 -41847004 + B3A SINE B2 36 165 -33 4 1429 648 233 19 32 chr5 110690482 110690637 -41846622 - ID_B1 SINE B4 0 224 72 4 1429 1098 70 0 7 chr5 110690788 110690927 -41846332 + B1_Mus2 SINE Alu 1 138 -9 4 1429 194 0 39 0 chr5 110690927 110690953 -41846306 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1429 3107 20 0 0 chr5 110691035 110691381 -41845878 + ORR1A0 LTR MaLR 1 346 0 4 1429 13892 53 16 6 chr5 110691381 110693155 -41844104 + ORR1A0-int LTR MaLR 1 1792 0 4 1429 3001 35 0 3 chr5 110693155 110693502 -41843757 + ORR1A0 LTR MaLR 1 346 0 4 1429 253 281 49 0 chr5 110693897 110693979 -41843280 + L1MC4 LINE L1 6822 6907 -1135 4 1429 595 171 168 17 chr5 110694251 110694370 -41842889 + B1_Mus1 SINE Alu 5 141 -7 4 1429 264 239 72 13 chr5 110695335 110695412 -41841847 + ID4 SINE ID 11 92 -60 4 1429 485 219 0 45 chr5 110695495 110695605 -41841654 + B1F1 SINE Alu 1 105 -44 4 1429 457 315 68 46 chr5 110696486 110696766 -41840493 + B4A SINE B4 3 288 -4 4 1429 264 309 71 0 chr5 110696958 110697042 -41840217 - PB1D10 SINE Alu -11 106 17 4 1429 849 243 106 50 chr5 110697197 110697518 -41839741 + MER2 DNA MER2_type 6 344 -1 4 1429 278 268 41 10 chr5 110697520 110697618 -41839641 - Charlie5 DNA MER1_type -2513 111 11 4 1429 408 140 106 130 chr5 110698091 110698214 -41839045 - PB1D9 SINE Alu 0 120 1 4 1429 25 0 0 0 chr5 110699045 110699070 -41838189 + AT_rich Low_complexity Low_complexity 1 25 0 4 1429 747 31 0 0 chr5 110699070 110699167 -41838092 - B1_Mus2 SINE Alu 0 147 51 4 1429 25 0 0 0 chr5 110699812 110699837 -41837422 + AT_rich Low_complexity Low_complexity 1 25 0 4 1429 1210 54 0 0 chr5 110700401 110700548 -41836711 - B1_Mus2 SINE Alu 0 147 1 4 1429 599 250 7 39 chr5 110700710 110700864 -41836395 - B1_Mur2 SINE Alu 0 149 1 4 1429 276 338 75 23 chr5 110700864 110700890 -41836369 - B4 SINE B4 -202 90 58 4 1429 878 268 53 0 chr5 110701077 110701286 -41835973 + ID_B1 SINE B4 3 222 -2 4 1429 681 189 177 16 chr5 110701311 110701499 -41835760 + B3 SINE B2 21 215 -1 4 1429 218 259 14 188 chr5 110701741 110701808 -41835451 + B1F2 SINE Alu 1 60 -89 4 1429 600 284 0 0 chr5 110701808 110701956 -41835303 + B1_Mur1 SINE Alu 2 149 0 4 1429 218 259 14 188 chr5 110701956 110702026 -41835233 + B1F2 SINE Alu 61 114 -35 4 1429 225 290 0 104 chr5 110701976 110702053 -41835206 + ID_B1 SINE B4 143 211 -13 4 1429 219 36 0 0 chr5 110702053 110702081 -41835178 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 4 1429 340 307 0 0 chr5 110702400 110702488 -41834771 - PB1 SINE Alu -17 110 23 4 1429 374 291 54 49 chr5 110702653 110702720 -41834539 + L1MB4 LINE L1 5675 5734 -449 4 1429 1197 49 0 0 chr5 110702720 110702863 -41834396 + B1_Mus1 SINE Alu 1 143 -5 4 1429 531 255 186 28 chr5 110702863 110703199 -41834060 + L1MB4 LINE L1 5735 6126 -54 4 1429 270 0 0 0 chr5 110704591 110704621 -41832638 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 4 1429 957 101 0 41 chr5 110704624 110704769 -41832490 - B1_Mur3 SINE Alu -8 141 3 4 1429 271 200 77 0 chr5 110704829 110704894 -41832365 - ID_B1 SINE B4 -70 154 85 4 1429 209 193 47 35 chr5 110705320 110705406 -41831853 + (TATG)n Simple_repeat Simple_repeat 4 90 0 4 1429 230 189 13 39 chr5 110707280 110707357 -41829902 + A-rich Low_complexity Low_complexity 1 75 0 4 1429 897 193 23 12 chr5 110708021 110708194 -41829065 + B3 SINE B2 11 185 -31 4 1429 646 242 10 10 chr5 110708519 110708658 -41828601 + ID_B1 SINE B4 81 219 -73 4 1429 1035 38 122 0 chr5 110708871 110709002 -41828257 + B1_Mus2 SINE Alu 1 147 0 4 1429 303 28 0 0 chr5 110709011 110709047 -41828212 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1429 22 0 0 0 chr5 110709126 110709148 -41828111 + AT_rich Low_complexity Low_complexity 1 22 0 4 1429 422 291 0 17 chr5 110709150 110709269 -41827990 - PB1D10 SINE Alu 0 117 1 4 1429 677 241 0 34 chr5 110709533 110709679 -41827580 + RSINE1 SINE B4 25 165 0 4 1429 617 322 171 3 chr5 110709690 110709983 -41827276 + Lx8 LINE L1 7040 7381 -92 4 1429 229 366 0 0 chr5 110710041 110710112 -41827147 + polypurine Low_complexity Low_complexity 3 73 0 4 1429 1162 68 0 7 chr5 110710567 110710715 -41826544 - B1_Mm SINE Alu 0 147 1 4 1429 1199 79 91 0 chr5 110710971 110711136 -41826123 - B2_Mm2 SINE B2 -14 181 2 4 1429 474 208 125 0 chr5 110711654 110711668 -41825591 + B4 SINE B4 70 98 -194 4 1429 821 70 52 0 chr5 110711668 110711783 -41825476 + B1_Mm SINE Alu 2 122 -25 4 1429 269 250 91 30 chr5 110711779 110711845 -41825414 + ID_B1 SINE B4 85 154 -70 4 1429 473 232 0 113 chr5 110711783 110711806 -41825453 + MT2B LTR ERVL 166 287 -314 4 1429 204 40 0 0 chr5 110711916 110711941 -41825318 + (CA)n Simple_repeat Simple_repeat 1 25 0 4 1429 213 39 0 0 chr5 110711960 110711986 -41825273 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 4 1429 535 191 46 28 chr5 110711990 110712098 -41825161 - PB1D9 SINE Alu -10 110 1 4 1429 1188 34 0 20 chr5 110712186 110712335 -41824924 - B1_Mus2 SINE Alu -1 146 1 4 1429 27 29 0 0 chr5 110712354 110712388 -41824871 + AT_rich Low_complexity Low_complexity 1 34 0 4 1429 901 228 49 10 chr5 110712390 110712594 -41824665 - B3 SINE B2 -4 212 1 4 1429 1142 75 7 0 chr5 110712866 110713012 -41824247 + B1_Mus2 SINE Alu 1 147 0 4 1429 263 0 62 21 chr5 110713299 110713347 -41823912 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 4 1429 1171 55 14 0 chr5 110713351 110713496 -41823763 - B1_Mm SINE Alu 0 147 1 4 1429 950 253 87 60 chr5 110713496 110713862 -41823397 - MTE2b LTR MaLR -3 376 1 4 1429 189 341 121 6 chr5 110713882 110714047 -41823212 + L2 LINE L2 2877 3060 -359 4 1429 207 0 0 0 chr5 110714147 110714170 -41823089 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 4 1429 1313 151 4 34 chr5 110714549 110714782 -41822477 - URR1A DNA MER1_type 0 226 1 4 1429 239 54 27 0 chr5 110715250 110715287 -41821972 + (CGGGG)n Simple_repeat Simple_repeat 2 39 0 4 1429 22 0 0 0 chr5 110715567 110715589 -41821670 + GC_rich Low_complexity Low_complexity 1 22 0 4 1429 1633 37 5 0 chr5 110715935 110716126 -41821133 + B2_Mm1a SINE B2 1 192 -1 4 1429 1280 66 64 32 chr5 110716412 110716600 -41820659 - B2_Mm2 SINE B2 -1 194 1 5 1429 224 203 80 16 chr5 110717023 110717148 -41820111 + (TA)n Simple_repeat Simple_repeat 1 133 0 5 1429 249 33 0 0 chr5 110717382 110717412 -41819847 + (TATG)n Simple_repeat Simple_repeat 2 31 0 5 1429 181 250 45 30 chr5 110717652 110717718 -41819541 + MIRc SINE MIR 167 233 -35 5 1429 282 276 0 33 chr5 110718029 110718044 -41819215 + MT2B LTR ERVL 154 165 -436 5 1429 405 215 83 18 chr5 110718044 110718153 -41819106 + PB1D7 SINE Alu 4 119 -1 5 1429 659 243 69 0 chr5 110718954 110719098 -41818161 + B3 SINE B2 59 212 -4 5 1429 1428 69 32 0 chr5 110719725 110719914 -41817345 - B2_Mm2 SINE B2 0 195 1 5 1429 580 191 45 0 chr5 110720590 110720700 -41816559 + PB1D9 SINE Alu 1 115 -5 5 1429 377 276 68 105 chr5 110720756 110720946 -41816313 + B4 SINE B4 109 291 -1 5 1429 459 274 32 8 chr5 110720977 110721102 -41816157 - B3 SINE B2 -87 129 2 5 1429 630 55 330 0 chr5 110721183 110721292 -41815967 - B1_Mus2 SINE Alu -1 146 2 5 1429 369 0 0 0 chr5 110721315 110721356 -41815903 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1429 447 298 0 0 chr5 110721442 110721563 -41815696 - B1F SINE Alu -1 148 28 5 1429 1103 43 50 0 chr5 110721769 110721910 -41815349 - B1_Mus1 SINE Alu 0 148 1 5 1429 369 202 258 23 chr5 110722506 110722638 -41814621 + RSINE1 SINE B4 2 164 -1 5 1429 288 53 0 0 chr5 110722827 110722865 -41814394 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1429 1195 62 0 0 chr5 110722865 110723011 -41814248 - B1_Mus2 SINE Alu 0 147 2 5 1429 201 352 36 18 chr5 110723262 110723372 -41813887 + MIRc SINE MIR 114 225 -43 5 1429 374 258 26 33 chr5 110723647 110723783 -41813476 - PB1D7 SINE Alu -3 146 21 5 1429 388 236 33 11 chr5 110725562 110725652 -41811607 - B4A SINE B4 -200 92 1 5 1429 732 169 71 29 chr5 110727540 110727680 -41809579 - B1_Mus1 SINE Alu 0 148 3 5 1429 1120 56 14 0 chr5 110727710 110727854 -41809405 - B1_Mus2 SINE Alu 0 147 2 5 1429 878 250 11 0 chr5 110729391 110729571 -41807688 - B3 SINE B2 0 216 35 5 1429 689 181 62 23 chr5 110730120 110730250 -41807009 - B1_Mur3 SINE Alu 0 149 15 5 1429 1416 63 21 10 chr5 110730422 110730614 -41806645 - B2_Mm2 SINE B2 0 195 2 5 1429 605 147 9 0 chr5 110730624 110730733 -41806526 + T-rich Low_complexity Low_complexity 4 113 0 5 1429 865 190 147 0 chr5 110730738 110730922 -41806337 - B3 SINE B2 -1 215 5 5 1429 487 338 25 37 chr5 110731805 110731968 -41805291 - RSINE1 SINE B4 -2 163 3 5 1429 1203 68 0 0 chr5 110732132 110732280 -41804979 + B1_Mus1 SINE Alu 1 148 0 5 1429 783 257 31 180 chr5 110733300 110733545 -41803714 + B4A SINE B4 6 229 -63 5 1429 763 145 17 0 chr5 110733545 110733662 -41803597 + PB1D9 SINE Alu 2 120 0 5 1429 783 257 31 180 chr5 110733662 110733739 -41803520 + B4A SINE B4 230 280 -12 5 1429 259 279 64 46 chr5 110733746 110733919 -41803340 - L1MC4a LINE L1 -50 7945 7770 5 1429 906 205 77 50 chr5 110734019 110734342 -41802917 - RLTR15 LTR ERVK -27 332 1 5 1429 248 218 0 52 chr5 110734517 110734575 -41802684 - MLT1F1 LTR MaLR -514 55 1 5 1429 477 295 98 49 chr5 110734709 110735076 -41802183 - L1MC4a LINE L1 -722 7160 6776 5 1429 232 283 70 10 chr5 110735057 110735157 -41802102 - L1MC2 LINE L1 -341 6003 5898 5 1429 225 0 0 0 chr5 110736238 110736263 -41800996 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 5 1429 714 246 26 53 chr5 110736265 110736454 -41800805 - B3A SINE B2 -14 184 1 5 1429 1269 41 0 0 chr5 110736468 110736615 -41800644 - B1_Mus2 SINE Alu 0 147 1 5 1429 395 261 34 11 chr5 110736909 110736998 -41800261 - RSINE1 SINE B4 -21 144 54 5 1429 751 237 130 0 chr5 110737004 110737181 -41800078 + B3 SINE B2 2 201 -15 5 1429 267 241 17 33 chr5 110737209 110737269 -41799990 - RSINE1 SINE B4 -104 61 3 5 1429 225 83 0 0 chr5 110737324 110737360 -41799899 + (CTTG)n Simple_repeat Simple_repeat 2 37 0 5 1429 1323 96 27 0 chr5 110737363 110737550 -41799709 - B2_Mm1a SINE B2 0 193 2 5 1429 209 33 0 32 chr5 110737591 110737622 -41799637 + (TTG)n Simple_repeat Simple_repeat 2 31 0 5 1429 1003 82 190 0 chr5 110737637 110737795 -41799464 - B2_Mm2 SINE B2 -4 191 4 5 1429 243 0 0 0 chr5 110737795 110737822 -41799437 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1429 216 269 19 19 chr5 110738187 110738240 -41799019 + B1F SINE Alu 1 53 -96 5 1429 440 291 35 28 chr5 110738287 110738432 -41798827 + B1F1 SINE Alu 4 149 0 5 1429 493 250 8 8 chr5 110738542 110738659 -41798600 + PB1D9 SINE Alu 3 119 -1 5 1429 253 332 120 7 chr5 110739182 110739333 -41797926 + MLT1G LTR MaLR 32 207 -372 5 1429 1034 86 28 7 chr5 110739466 110739607 -41797652 + B1_Mus1 SINE Alu 5 148 0 5 1429 468 319 109 0 chr5 110739917 110740036 -41797223 - RSINE1 SINE B4 -24 141 10 5 1429 633 274 45 0 chr5 110740051 110740208 -41797051 - ID_B1 SINE B4 -8 216 53 5 1429 281 220 139 33 chr5 110740330 110740452 -41796807 - L1MA4 LINE L1 -364 5936 5802 5 1429 948 165 15 50 chr5 110740534 110740732 -41796527 - B2_Mm2 SINE B2 -4 191 1 5 1429 233 329 12 60 chr5 110740806 110740890 -41796369 - ID4 SINE ID -3 80 1 5 1429 1536 54 16 0 chr5 110741139 110741325 -41795934 - B2_Mm2 SINE B2 -5 190 2 5 1429 1052 129 35 12 chr5 110741374 110741547 -41795712 + URR1B DNA MER1_type 49 225 0 5 1429 428 277 161 42 chr5 110741547 110741636 -41795623 - CYRA11_Mm Unknown Y-chromosome -443 174 55 5 1429 257 213 74 44 chr5 110742100 110742190 -41795069 - B1_Mur2 SINE Alu -1 148 46 5 1429 228 267 83 37 chr5 110742190 110742209 -41795050 - ID_B1 SINE B4 0 224 111 5 1429 1173 62 7 0 chr5 110742437 110742583 -41794676 - B1_Mus2 SINE Alu 0 147 1 5 1429 601 273 12 35 chr5 110742685 110742856 -41794403 + B3A SINE B2 28 194 -4 5 1429 781 210 68 91 chr5 110742909 110743129 -41794130 - B3 SINE B2 -1 215 1 5 1429 301 312 42 41 chr5 110743206 110743333 -41793926 + B1F SINE Alu 3 120 0 5 1429 820 165 38 0 chr5 110743399 110743532 -41793727 - B1_Mus2 SINE Alu -9 138 1 5 1429 506 329 29 0 chr5 110743534 110743674 -41793585 - ID_B1 SINE B4 0 224 81 5 1429 227 293 10 146 chr5 110743593 110743689 -41793570 - MT2B2 LTR ERVL -346 238 156 5 1429 263 167 93 0 chr5 110743720 110743774 -41793485 + L1MEe LINE L1 979 1037 -3817 5 1429 269 106 85 0 chr5 110743834 110743881 -41793378 + B1_Mus2 SINE Alu 97 147 0 5 1429 411 202 117 39 chr5 110743919 110744022 -41793237 - PB1D9 SINE Alu -8 112 2 5 1429 357 295 82 21 chr5 110744137 110744234 -41793025 - RSINE1 SINE B4 -62 103 1 5 1429 1264 41 0 0 chr5 110744296 110744443 -41792816 + B1_Mus2 SINE Alu 1 147 0 5 1429 437 182 13 0 chr5 110744567 110744644 -41792615 - B3 SINE B2 -11 205 128 5 1429 224 286 0 0 chr5 110744722 110744771 -41792488 + B3 SINE B2 2 50 -166 5 1429 2507 218 63 110 chr5 110744766 110745290 -41791969 - RLTR40 LTR ERVK -5 812 329 5 1429 1200 56 0 0 chr5 110745290 110745433 -41791826 - B1_Mus1 SINE Alu -5 143 1 5 1429 2507 218 63 110 chr5 110745433 110745732 -41791527 - RLTR40 LTR ERVK -489 328 28 5 1429 291 140 0 0 chr5 110745732 110745782 -41791477 + (TAA)n Simple_repeat Simple_repeat 1 50 0 5 1429 1368 82 22 0 chr5 110745799 110745981 -41791278 - B2_Mm2 SINE B2 -7 188 3 5 1429 474 248 45 9 chr5 110746003 110746113 -41791146 + PB1D10 SINE Alu 4 117 0 5 1429 661 269 62 6 chr5 110746489 110746650 -41790609 + B3A SINE B2 3 172 -26 5 1429 222 37 0 0 chr5 110746673 110746700 -41790559 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1429 389 297 91 34 chr5 110748069 110748334 -41788925 - L1MB8 LINE L1 -4 6174 5895 5 1429 1057 76 21 0 chr5 110748334 110748479 -41788780 - B2_Mm2 SINE B2 -45 150 3 5 1429 2995 57 39 5 chr5 110748968 110749355 -41787904 - MTB LTR MaLR 0 400 1 5 1429 615 297 13 66 chr5 110749365 110749592 -41787667 - ID_B1 SINE B4 -6 218 4 5 1429 294 194 0 0 chr5 110749689 110749756 -41787503 + T-rich Low_complexity Low_complexity 1 67 0 5 1429 1725 21 0 0 chr5 110749775 110749967 -41787292 + B2_Mm1a SINE B2 2 193 0 5 1429 503 212 7 14 chr5 110749979 110750091 -41787168 + PB1D10 SINE Alu 1 113 -7 5 1429 650 279 178 21 chr5 110751214 110751340 -41785919 - B4A SINE B4 -4 288 138 5 1429 792 103 0 0 chr5 110751340 110751456 -41785803 + (CCCA)n Simple_repeat Simple_repeat 3 118 0 5 1429 650 279 178 21 chr5 110751456 110751571 -41785688 - B4A SINE B4 -155 137 10 5 1429 249 320 114 19 chr5 110751584 110751689 -41785570 - PB1D10 SINE Alu -2 115 1 5 1429 296 302 37 19 chr5 110751709 110751817 -41785442 - L1MEf LINE L1 -5421 1219 1110 5 1429 261 256 179 0 chr5 110752010 110752142 -41785117 - L1MEf LINE L1 -5503 1044 887 5 1429 414 245 149 9 chr5 110754839 110754946 -41782313 - B1_Mur4 SINE Alu -16 134 13 5 1429 1168 88 0 0 chr5 110754967 110755114 -41782145 - B1_Mm SINE Alu 0 147 1 5 1429 529 218 24 24 chr5 110755160 110755287 -41781972 - Lx5 LINE L1 -5 7045 6919 5 1429 592 293 72 0 chr5 110755298 110755465 -41781794 - B3A SINE B2 -17 181 3 5 1430 436 311 40 0 chr5 110756127 110756275 -41780984 - MER54B LTR ERVL -209 584 431 5 1430 314 290 96 85 chr5 110756330 110756507 -41780752 + B3A SINE B2 20 198 0 5 1430 621 161 16 39 chr5 110756963 110757089 -41780170 + B1_Mur3 SINE Alu 25 149 0 5 1430 324 280 72 36 chr5 110757543 110757654 -41779605 + B1F SINE Alu 35 149 0 6 1430 32 26 0 0 chr5 110757684 110757723 -41779536 + AT_rich Low_complexity Low_complexity 1 39 0 6 1430 1200 48 14 0 chr5 110757754 110757899 -41779360 - B1_Mus1 SINE Alu 0 148 2 6 1430 262 197 90 15 chr5 110757996 110758063 -41779196 + PB1 SINE Alu 9 80 -47 6 1430 512 252 183 0 chr5 110758044 110758175 -41779084 - B3 SINE B2 -61 155 1 6 1430 1283 93 44 0 chr5 110758267 110758450 -41778809 - B2_Mm2 SINE B2 -1 194 4 6 1430 237 33 0 0 chr5 110759152 110759182 -41778077 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6 1430 300 167 0 0 chr5 110759343 110759360 -41777899 + A-rich Low_complexity Low_complexity 1 17 0 6 1430 1136 69 14 0 chr5 110759360 110759504 -41777755 + B1_Mus2 SINE Alu 2 147 0 6 1430 300 167 0 0 chr5 110759504 110759546 -41777713 + A-rich Low_complexity Low_complexity 18 59 0 6 1430 233 346 35 53 chr5 110761023 110761136 -41776123 - PB1D10 SINE Alu -6 111 1 6 1430 189 175 0 0 chr5 110761430 110761470 -41775789 + GA-rich Low_complexity Low_complexity 2 41 0 6 1430 216 0 0 0 chr5 110762028 110762052 -41775207 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 6 1430 844 175 7 40 chr5 110762173 110762322 -41774937 + B1_Mus1 SINE Alu 1 144 -4 6 1430 1563 6 0 0 chr5 110762328 110762504 -41774755 + (GGGAA)n Simple_repeat Simple_repeat 3 178 0 6 1430 559 115 32 32 chr5 110762509 110762635 -41774624 + GA-rich Low_complexity Low_complexity 1 126 0 6 1430 333 0 0 0 chr5 110762813 110762850 -41774409 + (TTGG)n Simple_repeat Simple_repeat 3 39 0 6 1430 548 118 71 90 chr5 110762879 110763006 -41774253 - B1_Mur3 SINE Alu 0 149 40 6 1430 261 240 101 126 chr5 110764323 110764442 -41772817 + PB1D7 SINE Alu 3 118 -2 6 1430 198 0 0 0 chr5 110764443 110764465 -41772794 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 6 1430 282 248 94 9 chr5 110764572 110764678 -41772581 - L1MC LINE L1 -2467 3679 3565 6 1430 1175 62 7 0 chr5 110766685 110766831 -41770428 + B1_Mus2 SINE Alu 1 147 0 6 1430 980 255 0 0 chr5 110767562 110767766 -41769493 - B3 SINE B2 -12 204 1 6 1430 300 269 75 28 chr5 110772888 110772995 -41764264 + MER57D LTR ERV1 54 165 -246 6 1430 292 289 51 72 chr5 110773144 110773282 -41763977 + B1F2 SINE Alu 2 136 -13 6 1430 271 273 0 15 chr5 110773255 110773322 -41763937 + ID4 SINE ID 12 77 -6 6 1430 410 313 38 7 chr5 110774126 110774315 -41762944 - L1MB3 LINE L1 -140 6031 5840 6 1430 600 273 43 21 chr5 110774891 110775078 -41762181 + B2_Mm2 SINE B2 1 191 -4 6 1430 347 297 191 17 chr5 110775197 110775375 -41761884 - B4A SINE B4 0 292 84 6 1430 28 0 0 0 chr5 110775375 110775403 -41761856 + AT_rich Low_complexity Low_complexity 1 28 0 6 1430 1185 189 5 5 chr5 110775414 110775616 -41761643 - B3 SINE B2 -11 205 4 6 1430 625 262 6 70 chr5 110775640 110775812 -41761447 - RSINE1 SINE B4 -2 163 3 6 1430 233 290 14 14 chr5 110775837 110775907 -41761352 - ID4_ SINE ID -13 70 1 6 1430 570 232 36 14 chr5 110775919 110776099 -41761160 - B3A SINE B2 -7 188 1 6 1430 276 243 12 75 chr5 110776391 110776471 -41760788 + MT2B LTR ERVL 190 264 -337 6 1430 670 105 2 0 chr5 110776405 110776506 -41760753 + B1_Mus2 SINE Alu 47 149 0 6 1430 282 116 0 0 chr5 110776506 110776549 -41760710 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1430 458 195 12 12 chr5 110776572 110776655 -41760604 + RSINE1 SINE B4 54 136 -29 6 1430 492 193 75 87 chr5 110776777 110776927 -41760332 - B1_Mur4 SINE Alu 0 150 3 6 1430 369 0 0 0 chr5 110776969 110777010 -41760249 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 1430 339 277 94 47 chr5 110777049 110777155 -41760104 + MLT1C LTR MaLR 309 419 -48 6 1430 1345 7 0 0 chr5 110777239 110777386 -41759873 + B1_Mus1 SINE Alu 2 148 0 6 1430 555 16 0 0 chr5 110777394 110777458 -41759801 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 1430 474 218 121 0 chr5 110777465 110777589 -41759670 + B1_Mur2 SINE Alu 1 139 -10 6 1430 252 314 35 11 chr5 110777601 110777688 -41759571 - MER57C2 LTR ERV1 -4 430 342 6 1430 213 306 0 40 chr5 110777841 110777916 -41759343 + CT-rich Low_complexity Low_complexity 5 76 0 6 1430 277 98 66 0 chr5 110778638 110778699 -41758560 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 6 1430 180 0 0 0 chr5 110778701 110778721 -41758538 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1430 217 136 44 22 chr5 110778739 110778784 -41758475 + CT-rich Low_complexity Low_complexity 4 49 0 6 1430 595 245 38 6 chr5 110778891 110779051 -41758208 - MTD LTR MaLR 0 419 255 6 1430 481 98 37 0 chr5 110779050 110779132 -41758127 + B2_Mm2 SINE B2 111 195 0 6 1430 373 295 0 11 chr5 110779878 110779967 -41757292 + B4 SINE B4 10 97 -195 6 1430 1109 81 0 7 chr5 110779967 110780116 -41757143 + B1_Mur4 SINE Alu 2 149 -1 6 1430 438 217 109 0 chr5 110780136 110780274 -41756985 + L1MC2 LINE L1 5815 5967 -377 6 1430 910 83 89 7 chr5 110780517 110780663 -41756596 + B2_Mm2 SINE B2 1 158 -37 6 1430 879 118 0 7 chr5 110780664 110780800 -41756459 - B2_Mm2 SINE B2 -53 142 8 6 1430 417 250 29 9 chr5 110780836 110780941 -41756318 - PB1D9 SINE Alu -1 119 13 6 1430 426 132 0 0 chr5 110780964 110781040 -41756219 + (GA)n Simple_repeat Simple_repeat 2 77 0 6 1430 284 314 112 8 chr5 110781068 110781193 -41756066 - ID_B1 SINE B4 -85 139 2 6 1430 819 203 71 11 chr5 110781250 110781434 -41755825 + B2_Mm2 SINE B2 1 195 0 6 1430 1224 108 22 22 chr5 110781436 110781616 -41755643 + B2_Mm2 SINE B2 2 181 -14 6 1430 484 168 191 8 chr5 110781644 110781770 -41755489 + B2_Mm2 SINE B2 47 195 0 6 1430 1184 75 0 0 chr5 110781816 110781963 -41755296 + B1_Mus1 SINE Alu 2 148 0 6 1430 282 56 0 0 chr5 110782101 110782137 -41755122 + (CTG)n Simple_repeat Simple_repeat 2 37 0 6 1430 1613 41 0 10 chr5 110782634 110782829 -41754430 - B2_Mm1t SINE B2 0 193 1 6 1430 782 156 37 0 chr5 110782845 110782980 -41754279 - B1_Mus2 SINE Alu 0 147 8 6 1430 214 233 16 16 chr5 110784173 110784234 -41753025 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 6 1430 227 146 0 18 chr5 110784242 110784298 -41752961 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 6 1430 313 145 26 0 chr5 110784300 110784376 -41752883 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 1430 513 0 0 0 chr5 110784800 110784857 -41752402 + (TC)n Simple_repeat Simple_repeat 2 58 0 6 1430 1271 41 0 0 chr5 110785254 110785401 -41751858 + B1_Mus2 SINE Alu 1 147 0 6 1430 301 209 0 69 chr5 110785655 110785727 -41751532 + RSINE1 SINE B4 2 68 -97 6 1430 275 252 9 88 chr5 110785731 110785844 -41751415 + RLTR20B3 LTR ERVK 2 105 -472 6 1430 403 70 0 3 chr5 110785787 110785856 -41751403 + B1_Mur4 SINE Alu 53 150 0 6 1430 678 148 0 0 chr5 110785856 110785971 -41751288 + (GAA)n Simple_repeat Simple_repeat 1 115 0 6 1430 233 200 127 0 chr5 110785973 110786028 -41751231 + BGLII_B LTR ERVK 56 117 -324 6 1430 1152 76 0 14 chr5 110786029 110786176 -41751083 - B1_Mus1 SINE Alu -2 146 2 6 1430 1294 108 17 0 chr5 110786176 110786352 -41750907 - B2_Mm2 SINE B2 -16 179 1 6 1430 1316 14 0 0 chr5 110786490 110786636 -41750623 + B1_Mm SINE Alu 1 146 -1 6 1430 312 64 0 0 chr5 110787281 110787328 -41749931 + B1_Mus2 SINE Alu 101 147 0 6 1430 669 191 47 54 chr5 110787338 110787487 -41749772 + B1_Mur3 SINE Alu 1 148 -1 6 1430 422 216 52 0 chr5 110787488 110787585 -41749674 - MT2A LTR ERVL -431 102 1 6 1430 1061 103 12 18 chr5 110787670 110787838 -41749421 + B2_Mm2 SINE B2 1 167 -28 6 1430 405 0 0 0 chr5 110787974 110788019 -41749240 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1430 216 0 0 0 chr5 110788080 110788104 -41749155 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 6 1430 1108 58 29 0 chr5 110788106 110788243 -41749016 - B1_Mus2 SINE Alu -6 141 1 6 1430 588 98 0 0 chr5 110788394 110788476 -41748783 + B2_Mm2 SINE B2 1 82 -113 6 1430 180 0 0 0 chr5 110789041 110789061 -41748198 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1430 235 297 153 0 chr5 110789061 110789080 -41748179 - ID_B1 SINE B4 -13 211 84 6 1430 328 228 206 0 chr5 110789080 110789172 -41748087 - B1_Mur1 SINE Alu -36 113 3 6 1430 335 109 0 0 chr5 110789185 110789249 -41748010 - B2_Mm1a SINE B2 -3 190 127 6 1430 1052 106 125 0 chr5 110789284 110789444 -41747815 - B2_Mm2 SINE B2 -14 181 2 6 1430 496 182 0 0 chr5 110789502 110789590 -41747669 + B1_Mur2 SINE Alu 49 136 -13 6 1430 307 274 191 24 chr5 110790000 110790168 -41747091 + RMER15 LTR ERVL 324 519 -56 6 1430 23 33 0 0 chr5 110791596 110791626 -41745633 + AT_rich Low_complexity Low_complexity 1 30 0 6 1430 22 0 0 0 chr5 110791780 110791802 -41745457 + AT_rich Low_complexity Low_complexity 1 22 0 6 1430 253 242 179 0 chr5 110793308 110793403 -41743856 + ID_B1 SINE B4 97 208 -16 6 1430 660 188 8 0 chr5 110793905 110794022 -41743237 + B1_Mur2 SINE Alu 3 120 -29 6 1430 1067 67 0 7 chr5 110794431 110794566 -41742693 - B1_Mus2 SINE Alu -13 134 1 6 1430 23 33 0 0 chr5 110794848 110794878 -41742381 + AT_rich Low_complexity Low_complexity 1 30 0 6 1430 22 0 0 0 chr5 110795032 110795054 -41742205 + AT_rich Low_complexity Low_complexity 1 22 0 7 1430 317 235 128 12 chr5 110795230 110795316 -41741943 + RLTR42-int LTR ERVK 1701 1796 -3726 7 1430 1944 160 240 21 chr5 110795409 110795843 -41741416 + RLTR24 LTR ERV1 1 529 0 7 1430 441 0 0 0 chr5 110795857 110795906 -41741353 + (TC)n Simple_repeat Simple_repeat 2 50 0 7 1430 228 67 0 0 chr5 110795908 110795938 -41741321 + (TATG)n Simple_repeat Simple_repeat 2 31 0 7 1430 22 35 0 0 chr5 110795938 110795967 -41741292 + AT_rich Low_complexity Low_complexity 1 29 0 7 1430 936 203 126 33 chr5 110795977 110796252 -41741007 + ORR1C2 LTR MaLR 1 384 0 7 1430 4330 227 131 28 chr5 110796252 110796686 -41740573 + ORR1C2-int LTR MaLR 1 506 -864 7 1430 1191 43 0 0 chr5 110796686 110796824 -41740435 + B1_Mus2 SINE Alu 1 138 -9 7 1430 4330 227 131 28 chr5 110796824 110797628 -41739631 + ORR1C2-int LTR MaLR 507 1366 -4 7 1430 1038 182 128 16 chr5 110797673 110797924 -41739335 + ORR1C2 LTR MaLR 98 376 -8 7 1430 636 183 90 20 chr5 110798353 110798492 -41738767 + B3 SINE B2 1 133 -62 7 1430 1286 78 83 0 chr5 110798492 110798672 -41738587 + B2_Mm2 SINE B2 1 195 0 7 1430 448 282 68 121 chr5 110798672 110798688 -41738571 + B2_Mm2 SINE B2 134 147 -48 7 1430 690 218 154 0 chr5 110798688 110798844 -41738415 + B3A SINE B2 4 183 -15 7 1430 448 282 68 121 chr5 110798844 110798893 -41738366 + B2_Mm2 SINE B2 148 195 0 7 1430 1298 27 0 0 chr5 110799108 110799255 -41738004 - B1_Mm SINE Alu 0 147 1 7 1430 889 230 93 39 chr5 110799288 110799546 -41737713 + RLTR42-int LTR ERVK 4361 4632 -890 7 1430 674 142 0 0 chr5 110802113 110802219 -41735040 + B2_Mm2 SINE B2 2 107 -88 7 1430 324 0 0 0 chr5 110802219 110802255 -41735004 + (CCAA)n Simple_repeat Simple_repeat 2 37 0 7 1430 344 291 174 33 chr5 110802751 110802964 -41734295 + MER68 LTR ERVL 40 282 -281 7 1430 362 214 105 19 chr5 110803832 110803937 -41733322 - Charlie5 DNA MER1_type -268 2356 2243 7 1430 598 248 12 60 chr5 110803963 110804130 -41733129 + RSINE1 SINE B4 7 165 0 7 1430 441 0 0 0 chr5 110804136 110804185 -41733074 + (TC)n Simple_repeat Simple_repeat 1 49 0 7 1430 270 0 0 0 chr5 110804185 110804214 -41733045 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1430 188 176 95 119 chr5 110808721 110808805 -41728454 - MIR SINE MIR -103 159 78 7 1430 947 170 133 0 chr5 110808950 110809138 -41728121 - B3 SINE B2 -3 213 1 7 1430 768 168 42 7 chr5 110809166 110809310 -41727949 - B1_Mur4 SINE Alu 0 150 2 7 1430 948 137 0 14 chr5 110809358 110809506 -41727753 - B1_Mus1 SINE Alu -1 147 2 7 1430 405 254 100 68 chr5 110809529 110809719 -41727540 - B3A SINE B2 0 198 3 7 1430 667 171 8 8 chr5 110809742 110809866 -41727393 - B1_Mur3 SINE Alu -21 128 5 7 1430 415 250 31 125 chr5 110809913 110810073 -41727186 - RSINE1 SINE B4 -10 155 11 7 1430 248 269 0 0 chr5 110810086 110810138 -41727121 - ID4 SINE ID -29 54 3 7 1430 486 285 29 7 chr5 110810152 110810290 -41726969 - B1F SINE Alu -8 141 1 7 1430 421 270 90 53 chr5 110811507 110811695 -41725564 + MLT1A0 LTR MaLR 121 315 -50 7 1430 657 231 149 6 chr5 110812748 110812922 -41724337 + B3 SINE B2 7 205 -11 7 1430 696 167 175 0 chr5 110812942 110813068 -41724191 - B1_Mur1 SINE Alu -1 148 1 7 1430 292 235 43 58 chr5 110813175 110813286 -41723973 + MLT1A0 LTR MaLR 229 358 -50 7 1430 212 103 0 49 chr5 110814762 110814803 -41722456 + (CGGGG)n Simple_repeat Simple_repeat 1 39 0 7 1430 198 0 0 0 chr5 110817151 110817173 -41720086 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 7 1430 413 183 247 0 chr5 110819715 110819808 -41717451 - PB1D10 SINE Alu -1 116 1 7 1430 1367 216 137 52 chr5 110821251 110821274 -41715985 + MTD LTR MaLR 1 21 -398 7 1430 252 0 0 0 chr5 110821274 110821302 -41715957 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 7 1430 1367 216 137 52 chr5 110821302 110821664 -41715595 + MTD LTR MaLR 22 419 0 7 1430 463 182 0 22 chr5 110822517 110822607 -41714652 - B1_Mur4 SINE Alu -32 118 31 7 1430 360 0 0 0 chr5 110823208 110823248 -41714011 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 7 1430 715 35 43 0 chr5 110823677 110823792 -41713467 + (TG)n Simple_repeat Simple_repeat 2 121 0 7 1430 185 322 0 0 chr5 110825641 110825700 -41711559 + MIR SINE MIR 90 148 -114 7 1430 1290 111 136 0 chr5 110826361 110826559 -41710700 - URR1A DNA MER1_type -1 225 1 7 1430 2345 80 82 11 chr5 110826717 110827084 -41710175 + MTB LTR MaLR 1 393 -7 7 1430 240 211 104 96 chr5 110827939 110828054 -41709205 + MIR SINE MIR 35 150 -112 7 1430 261 275 109 9 chr5 110828057 110828167 -41709092 - RMER12 LTR ERVK -459 863 743 7 1430 1228 241 71 20 chr5 110828233 110828585 -41708674 + MTEb LTR MaLR 3 372 -7 7 1430 2257 252 55 5 chr5 110828613 110829175 -41708084 + MTEb-int LTR MaLR 1 590 -990 7 1430 312 333 0 134 chr5 110829277 110829337 -41707922 + B4 SINE B4 168 226 -66 7 1430 776 153 80 0 chr5 110829337 110829474 -41707785 + B1_Mur2 SINE Alu 1 148 -1 7 1430 312 333 0 134 chr5 110829474 110829555 -41707704 + B4 SINE B4 227 290 -2 7 1430 374 161 0 0 chr5 110829595 110829657 -41707602 + PB1D9 SINE Alu 14 75 -45 7 1430 229 227 13 120 chr5 110829598 110829673 -41707586 + MT2B LTR ERVL 181 247 -354 7 1430 2406 279 132 21 chr5 110829681 110829842 -41707417 + MTEb-int LTR MaLR 579 737 -843 7 1430 1323 90 17 11 chr5 110829842 110830021 -41707238 + B2_Mm2 SINE B2 1 180 -15 7 1430 324 0 0 0 chr5 110830021 110830057 -41707202 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 1430 2406 279 132 21 chr5 110830057 110830718 -41706541 + MTEb-int LTR MaLR 738 1493 -87 7 1430 680 257 43 78 chr5 110830785 110831017 -41706242 + MTEa LTR MaLR 75 298 -81 7 1430 1077 209 64 28 chr5 110831017 110831268 -41705991 + RMER1C Other Other 1082 1341 -1 7 1430 599 167 7 16 chr5 110831268 110831416 -41705843 - B1_Mm SINE Alu -13 134 24 7 1430 279 0 0 0 chr5 110831416 110831447 -41705812 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1430 346 195 0 61 chr5 110831447 110831463 -41705796 - PB1D9 SINE Alu -98 22 10 7 1430 240 221 105 56 chr5 110832520 110832635 -41704624 - MIRc SINE MIR -111 165 37 7 1430 623 150 93 43 chr5 110837660 110837799 -41699460 - B1_Mus1 SINE Alu -2 146 1 7 1430 1247 54 0 0 chr5 110839983 110840130 -41697129 + B1_Mus2 SINE Alu 1 147 0 7 1430 203 0 0 36 chr5 110840132 110840160 -41697099 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 7 1430 701 246 40 23 chr5 110840180 110840355 -41696904 + B3 SINE B2 38 215 -1 7 1430 206 32 32 0 chr5 110841222 110841253 -41696006 + (TGGG)n Simple_repeat Simple_repeat 4 35 0 7 1430 362 260 13 0 chr5 110841863 110841940 -41695319 + ID4_ SINE ID 3 80 -3 7 1430 439 240 125 52 chr5 110841968 110842104 -41695155 + B1_Mur3 SINE Alu 1 146 -3 7 1430 1235 97 17 0 chr5 110843274 110843449 -41693810 + B2_Mm1t SINE B2 2 179 -14 7 1430 295 87 302 42 chr5 110843482 110843601 -41693658 + B2_Mm2 SINE B2 46 195 0 7 1430 396 0 0 0 chr5 110845577 110845621 -41691638 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1430 764 262 0 12 chr5 110849671 110849833 -41687426 - RSINE1 SINE B4 0 165 6 7 1430 1041 216 39 0 chr5 110849858 110850066 -41687193 - B3 SINE B2 0 216 1 7 1430 231 36 0 0 chr5 110852026 110852054 -41685205 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1430 1127 96 0 0 chr5 110852054 110852200 -41685059 - B1_Mm SINE Alu 0 147 2 7 1430 355 191 15 0 chr5 110852849 110852917 -41684342 + B2_Mm2 SINE B2 2 70 -125 7 1430 256 317 107 8 chr5 110854037 110854158 -41683101 - ORR1E LTR MaLR -225 134 2 7 1430 326 214 0 41 chr5 110854471 110854544 -41682715 - ID_B1 SINE B4 0 224 155 7 1430 22 0 0 0 chr5 110854736 110854758 -41682501 + AT_rich Low_complexity Low_complexity 1 22 0 7 1430 246 303 55 47 chr5 110855482 110855610 -41681649 - B1F1 SINE Alu -18 131 3 7 1430 617 238 224 30 chr5 110855788 110856056 -41681203 + MTD LTR MaLR 1 320 -99 7 1430 321 247 146 0 chr5 110856254 110856343 -41680916 - PB1D7 SINE Alu -6 114 13 7 1430 1272 111 21 21 chr5 110856412 110856605 -41680654 - B2_Mm2 SINE B2 -1 194 2 7 1430 504 208 8 16 chr5 110856636 110856758 -41680501 + B1_Mus1 SINE Alu 28 148 0 7 1430 291 329 90 39 chr5 110858192 110858347 -41678912 - RSINE1 SINE B4 0 165 3 7 1430 217 174 17 84 chr5 110861019 110861138 -41676121 + (GGCTG)n Simple_repeat Simple_repeat 4 114 0 7 1430 216 0 0 0 chr5 110863175 110863199 -41674060 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1430 992 118 28 0 chr5 110863199 110863343 -41673916 - B1_Mus1 SINE Alu 0 148 1 7 1430 362 281 103 48 chr5 110863650 110863669 -41673590 + B4 SINE B4 70 96 -196 7 1430 593 181 118 15 chr5 110863669 110863804 -41673455 + B1_Mur3 SINE Alu 1 149 0 7 1430 559 191 9 0 chr5 110864465 110864570 -41672689 - B1_Mur4 SINE Alu -1 149 44 7 1430 566 137 211 49 chr5 110865028 110865151 -41672108 + B1_Mus1 SINE Alu 1 143 -5 7 1430 531 0 0 0 chr5 110865165 110865224 -41672035 + (CA)n Simple_repeat Simple_repeat 2 60 0 7 1430 673 203 15 23 chr5 110865226 110865357 -41671902 + B3 SINE B2 1 130 -86 7 1430 1266 64 110 0 chr5 110865376 110865549 -41671710 + B2_Mm1a SINE B2 1 192 -1 7 1430 1644 94 61 64 chr5 110866353 110866683 -41670576 - RLTR11B LTR ERVK 0 453 125 7 1430 257 177 152 86 chr5 110866703 110866808 -41670451 - Lx3C LINE L1 0 6976 6865 7 1430 572 130 130 0 chr5 110866812 110866927 -41670332 - RLTR11B LTR ERVK -318 135 6 7 1430 1131 61 0 33 chr5 110871166 110871318 -41665941 + B1_Mus1 SINE Alu 2 148 0 7 1430 391 318 57 57 chr5 110871378 110871535 -41665724 + ID_B1 SINE B4 1 157 -67 7 1430 369 0 0 0 chr5 110872771 110872812 -41664447 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1430 382 174 114 23 chr5 110872814 110872902 -41664357 - PB1D9 SINE Alu -20 100 5 7 1430 787 127 13 66 chr5 110873554 110873706 -41663553 - B1_Mur3 SINE Alu 0 149 6 7 1430 874 76 127 22 chr5 110873853 110873987 -41663272 + B1_Mus1 SINE Alu 1 148 0 7 1430 1123 48 0 65 chr5 110873993 110874148 -41663111 + B1_Mm SINE Alu 1 145 -2 8 1430 188 352 33 11 chr5 110874969 110875061 -41662198 + MIRb SINE MIR 132 225 -43 8 1430 21 36 0 0 chr5 110876972 110877000 -41660259 + GC_rich Low_complexity Low_complexity 1 28 0 8 1430 30 89 0 0 chr5 110877236 110877315 -41659944 + GC_rich Low_complexity Low_complexity 1 79 0 8 1430 3181 47 42 0 chr5 110878966 110879346 -41657913 - MTA_Mm LTR MaLR 0 396 1 8 1430 1148 101 0 0 chr5 110879779 110879927 -41657332 - B1_Mus1 SINE Alu 0 148 1 8 1430 1233 54 0 0 chr5 110880221 110880368 -41656891 + B1_Mus2 SINE Alu 1 147 0 8 1430 2019 237 11 75 chr5 110880823 110880958 -41656301 - Lx7 LINE L1 -1276 6420 6316 8 1430 1045 37 70 42 chr5 110880958 110881100 -41656159 - B1_Mus1 SINE Alu -1 147 2 8 1430 2019 237 11 75 chr5 110881100 110881151 -41656108 - Lx7 LINE L1 -1381 6315 6268 8 1430 2808 124 45 51 chr5 110881151 110881619 -41655640 - RMER4A LTR ERVK -1 465 1 8 1430 2019 237 11 75 chr5 110881619 110881991 -41655268 - Lx7 LINE L1 -1429 6267 5897 8 1430 474 186 41 41 chr5 110882249 110882285 -41654974 - B4 SINE B4 -84 208 86 8 1430 682 23 0 0 chr5 110882285 110882372 -41654887 - B1_Mus2 SINE Alu -60 87 1 8 1430 897 251 34 10 chr5 110882464 110882669 -41654590 + B3 SINE B2 2 211 -5 8 1430 1146 68 0 40 chr5 110882688 110882840 -41654419 - B1_Mm SINE Alu -1 146 1 8 1430 476 298 135 22 chr5 110882872 110883057 -41654202 + ID_B1 SINE B4 2 207 -17 8 1430 647 198 213 33 chr5 110883098 110883281 -41653978 - B3 SINE B2 0 216 1 8 1430 293 310 29 20 chr5 110883405 110883419 -41653840 + ID SINE ID 70 84 -140 8 1430 426 216 45 73 chr5 110883419 110883529 -41653730 + B1_Mur1 SINE Alu 2 108 -41 8 1430 255 190 0 0 chr5 110883801 110883859 -41653400 + T-rich Low_complexity Low_complexity 1 58 0 8 1430 1152 88 0 0 chr5 110883861 110884008 -41653251 - B1_Mus1 SINE Alu 0 148 2 8 1430 819 184 7 7 chr5 110884011 110884159 -41653100 - B1_Mus1 SINE Alu 0 148 1 8 1430 645 195 0 0 chr5 110884559 110885059 -41652200 + (TG)n Simple_repeat Simple_repeat 1 500 0 8 1430 438 20 0 0 chr5 110885059 110885110 -41652149 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 8 1430 645 187 0 0 chr5 110885110 110885190 -41652069 + (TG)n Simple_repeat Simple_repeat 1 80 0 8 1430 219 225 0 0 chr5 110886502 110886542 -41650717 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1430 27 29 0 0 chr5 110886544 110886578 -41650681 + AT_rich Low_complexity Low_complexity 1 34 0 8 1430 867 168 7 32 chr5 110886582 110886736 -41650523 + B1_Mur4 SINE Alu 1 150 0 8 178 711 137 0 0 chr5 110886798 110886922 -41650337 + (TG)n Simple_repeat Simple_repeat 2 125 0 8 1431 180 125 0 0 chr5 110887235 110887267 -41649992 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1431 418 234 0 13 chr5 110887311 110887389 -41649870 + ID4_ SINE ID 1 77 -6 8 1431 697 241 21 0 chr5 110887434 110887579 -41649680 - B1_Mur3 SINE Alu 0 149 2 8 1431 418 229 143 0 chr5 110888497 110888602 -41648657 + B3 SINE B2 1 120 -96 8 1431 451 260 126 30 chr5 110889530 110889665 -41647594 - B1F2 SINE Alu 0 149 2 8 1431 1021 81 0 123 chr5 110889677 110889847 -41647412 - B1_Mur3 SINE Alu 0 149 1 8 1431 634 271 104 40 chr5 110889858 110890185 -41647074 - L1M2 LINE L1 -780 5363 5016 8 1431 1000 101 126 0 chr5 110890185 110890344 -41646915 + B2_Mm1t SINE B2 1 179 -14 8 1431 417 82 366 30 chr5 110890384 110890485 -41646774 + B2_Mm2 SINE B2 46 180 -15 8 1431 621 254 50 6 chr5 110890485 110890667 -41646592 - L1M2 LINE L1 -1116 5027 4838 8 1431 1009 46 130 0 chr5 110890710 110890841 -41646418 - B1_Mus1 SINE Alu 0 148 1 8 1431 349 341 77 28 chr5 110890865 110891046 -41646213 + L2a LINE L2 3182 3371 -55 8 1431 928 161 0 0 chr5 110891124 110891261 -41645998 + B1_Mus2 SINE Alu 9 145 -2 8 1431 997 245 19 9 chr5 110891269 110891479 -41645780 - B3 SINE B2 0 216 5 8 1431 342 309 47 16 chr5 110891481 110891609 -41645650 + HAL1-2a_MD LINE L1 2351 2482 -542 8 1431 328 337 34 57 chr5 110891619 110891795 -41645464 + MTE2b LTR MaLR 13 184 -195 8 1431 408 275 98 33 chr5 110891920 110892104 -41645155 + Ricksha_c DNA MuDR 698 893 -1155 8 1431 1244 127 11 0 chr5 110892803 110892992 -41644267 - B2_Mm1t SINE B2 0 193 3 8 1431 1112 79 121 0 chr5 110892995 110893160 -41644099 - B2_Mm2 SINE B2 -9 186 2 8 1431 3412 38 5 0 chr5 110893444 110893838 -41643421 - MTA_Mm LTR MaLR 0 396 1 8 1431 289 197 103 29 chr5 110894529 110894597 -41642662 - ID_B1 SINE B4 -23 201 129 8 1431 2072 25 26 8 chr5 110894612 110894894 -41642365 + MT-int LTR MaLR 783 1194 -64 8 1431 442 241 12 0 chr5 110894856 110894939 -41642320 - ID_B1 SINE B4 -125 99 16 8 1431 236 308 161 21 chr5 110895569 110895755 -41641504 - MLT1F LTR MaLR -244 304 93 8 1431 423 0 0 0 chr5 110895978 110896025 -41641234 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1431 343 257 87 34 chr5 110897853 110898002 -41639257 + ORR1E LTR MaLR 66 222 -137 8 1431 633 164 111 8 chr5 110898130 110898247 -41639012 - B1_Mus2 SINE Alu -18 129 1 8 1431 311 330 117 0 chr5 110898600 110898694 -41638565 - B1_Mur3 SINE Alu -41 108 4 8 1431 294 317 56 16 chr5 110898694 110898819 -41638440 - ID_B1 SINE B4 0 224 95 8 1431 1659 156 103 16 chr5 110899052 110899429 -41637830 - RMER17C LTR ERVK 0 410 1 8 1431 273 133 206 29 chr5 110899727 110899804 -41637455 - B1_Mur2 SINE Alu -1 148 34 8 1431 585 156 165 0 chr5 110899814 110899923 -41637336 + B1_Mur3 SINE Alu 17 143 -6 8 1431 321 26 0 0 chr5 110900100 110900138 -41637121 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 8 1431 2011 167 83 17 chr5 110900138 110900547 -41636712 - RMER10A LTR ERVL -5 437 2 8 1431 780 36 254 0 chr5 110900583 110900693 -41636566 + B1_Mus1 SINE Alu 1 138 -10 8 1431 210 37 0 0 chr5 110900693 110900720 -41636539 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1431 203 0 37 0 chr5 110900830 110900857 -41636402 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 8 1431 228 158 0 0 chr5 110900875 110900913 -41636346 + B1F SINE Alu 75 112 -37 8 1431 440 263 91 57 chr5 110902156 110902366 -41634893 - ID_B1 SINE B4 -1 223 7 8 1431 246 128 0 0 chr5 110903119 110903158 -41634101 + (TCC)n Simple_repeat Simple_repeat 3 41 0 8 1431 378 0 0 0 chr5 110904290 110904332 -41632927 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1431 22 0 0 0 chr5 110904965 110904987 -41632272 + AT_rich Low_complexity Low_complexity 1 22 0 8 1431 288 155 69 0 chr5 110905009 110905067 -41632192 - B4A SINE B4 -137 155 94 8 1431 392 98 0 47 chr5 110905015 110905079 -41632180 - B1_Mur4 SINE Alu -89 61 1 8 1431 1522 52 0 25 chr5 110905099 110905297 -41631962 - B2_Mm1a SINE B2 0 193 1 8 1431 198 0 0 0 chr5 110905331 110905353 -41631906 + (CA)n Simple_repeat Simple_repeat 1 22 0 8 1431 23 0 0 0 chr5 110905433 110905456 -41631803 + AT_rich Low_complexity Low_complexity 1 23 0 8 1431 267 323 10 41 chr5 110905999 110906096 -41631163 - MIR SINE MIR -95 167 74 8 1431 730 251 14 77 chr5 110906238 110906445 -41630814 + B3A SINE B2 5 198 0 8 1431 577 234 45 30 chr5 110906470 110906602 -41630657 - B1_Mus2 SINE Alu -12 135 2 8 1431 1184 75 0 0 chr5 110906631 110906777 -41630482 + B1_Mus2 SINE Alu 2 147 0 8 1431 351 0 0 0 chr5 110906794 110906833 -41630426 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1431 635 275 58 54 chr5 110906868 110907091 -41630168 + ID_B1 SINE B4 1 224 0 8 1431 968 60 179 0 chr5 110907104 110907255 -41630004 + B2_Mm2 SINE B2 2 179 -16 8 1431 824 226 69 63 chr5 110907488 110907677 -41629582 - B3 SINE B2 0 216 27 8 1431 990 74 87 14 chr5 110907694 110907832 -41629427 - B1_Mus1 SINE Alu 0 148 1 8 1431 309 118 351 18 chr5 110907883 110907994 -41629265 - B2_Mm2 SINE B2 0 195 48 8 1431 1333 73 11 6 chr5 110908065 110908243 -41629016 - B2_Mm1t SINE B2 -13 180 2 8 1431 227 94 0 0 chr5 110908542 110908574 -41628685 + LTR33A_ LTR ERVL 500 531 0 8 1431 257 51 0 25 chr5 110908679 110908719 -41628540 + (TTA)n Simple_repeat Simple_repeat 2 40 0 8 1431 1060 62 0 0 chr5 110908720 110908850 -41628409 - B1_Mus1 SINE Alu -12 136 7 8 1431 284 268 24 24 chr5 110908748 110908874 -41628385 - ORR1B1-int LTR MaLR -755 754 629 8 1431 491 250 34 17 chr5 110908885 110909003 -41628256 + PB1D7 SINE Alu 1 120 0 8 1431 581 291 110 11 chr5 110909015 110909206 -41628053 + B3 SINE B2 1 210 -6 8 1431 475 165 128 0 chr5 110909444 110909553 -41627706 + RLTR19-int LTR ERVK 1209 1331 -4806 8 1431 1267 70 37 21 chr5 110911384 110911575 -41625684 - RMER6A LTR ERVK -55 701 508 8 1431 277 309 32 11 chr5 110911570 110911665 -41625594 + ID_B1 SINE B4 116 212 -12 8 1431 1727 179 99 208 chr5 110911656 110912374 -41624885 - RMER21A LTR ERV1 -63 884 245 8 1431 429 197 0 0 chr5 110912428 110912504 -41624755 - RMER21A LTR ERV1 -871 76 1 8 1431 486 202 144 0 chr5 110912558 110912662 -41624597 + B3 SINE B2 2 120 -96 8 1431 293 68 0 22 chr5 110912692 110912737 -41624522 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1431 526 246 34 36 chr5 110912784 110912910 -41624349 + B1_Mur1 SINE Alu 2 124 -23 8 1431 520 171 264 33 chr5 110913337 110913458 -41623801 - B1_Mur3 SINE Alu 0 149 1 8 1431 1984 93 55 88 chr5 110914607 110914682 -41622577 - ORR1A2 LTR MaLR -8 319 266 8 1431 1205 41 7 27 chr5 110914682 110914832 -41622427 - B1_Mm SINE Alu 0 147 1 8 1431 1984 93 55 88 chr5 110914832 110915086 -41622173 - ORR1A2 LTR MaLR -62 265 1 8 1431 27 29 0 0 chr5 110916313 110916347 -41620912 + AT_rich Low_complexity Low_complexity 1 34 0 9 1431 246 250 44 0 chr5 110916690 110916758 -41620501 + MLT1G3 LTR MaLR 483 553 -42 9 1431 343 295 73 69 chr5 110916838 110917172 -41620087 + L2a LINE L2 2876 3195 -180 9 1431 198 167 27 40 chr5 110917589 110917664 -41619595 + (CAGAGA)n Simple_repeat Simple_repeat 2 75 0 9 1431 550 216 11 0 chr5 110919208 110919296 -41617963 + B1_Mus2 SINE Alu 1 89 -58 9 1431 185 0 40 0 chr5 110919296 110919321 -41617938 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 1431 317 164 56 25 chr5 110919333 110919413 -41617846 + MTE2b LTR MaLR 287 368 -11 9 1431 231 36 0 0 chr5 110919451 110919479 -41617780 + (TC)n Simple_repeat Simple_repeat 1 28 0 9 1431 1200 128 72 0 chr5 110919481 110919661 -41617598 - B2_Mm2 SINE B2 -2 193 1 9 1431 283 326 129 0 chr5 110919871 110920049 -41617210 - MLT1A0 LTR MaLR 0 365 165 9 1431 623 75 0 4 chr5 110920426 110920517 -41616742 + B2_Mm2 SINE B2 2 89 -109 9 1431 450 0 0 0 chr5 110920536 110920586 -41616673 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 9 1431 432 55 0 0 chr5 110920594 110920649 -41616610 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 9 1431 246 360 0 0 chr5 110920652 110920738 -41616521 - MER63D DNA AcHobo -599 462 377 9 1431 261 173 25 51 chr5 110920764 110920843 -41616416 + (TCTCTG)n Simple_repeat Simple_repeat 1 77 0 9 1431 1240 28 14 0 chr5 110920916 110921061 -41616198 + B1_Mus2 SINE Alu 1 147 0 9 1431 869 232 77 6 chr5 110921089 110921108 -41616151 - B3 SINE B2 -13 203 183 9 1431 344 119 17 0 chr5 110921108 110921167 -41616092 + (TATG)n Simple_repeat Simple_repeat 3 62 0 9 1431 869 232 77 6 chr5 110921167 110921329 -41615930 - B3 SINE B2 -34 182 9 9 1431 708 173 4 0 chr5 110921342 110921471 -41615788 - B1_Mur1 SINE Alu -7 142 11 9 1431 371 227 34 68 chr5 110921475 110921588 -41615671 - PB1D7 SINE Alu -6 114 1 9 1431 1237 35 7 0 chr5 110921958 110922103 -41615156 - B1_Mus1 SINE Alu 0 148 3 9 1431 357 245 104 38 chr5 110922103 110922202 -41615057 - B1_Mm SINE Alu -27 120 14 9 1431 381 144 97 108 chr5 110922125 110922218 -41615041 - MT2B LTR ERVL -356 245 154 9 1431 603 131 0 70 chr5 110922185 110922300 -41614959 - MT2B LTR ERVL -314 287 181 9 1431 745 165 27 48 chr5 110922252 110922329 -41614930 - RMER6C LTR ERVK -547 143 64 9 1431 1983 129 55 20 chr5 110922329 110922676 -41614583 + RLTR15 LTR ERVK 1 359 0 9 1431 745 165 27 48 chr5 110922676 110922744 -41614515 - RMER6C LTR ERVK -627 63 1 9 1431 240 360 0 0 chr5 110923169 110923283 -41613976 + CT-rich Low_complexity Low_complexity 2 115 0 9 1431 201 339 35 18 chr5 110923290 110923404 -41613855 + MIR SINE MIR 31 146 -116 9 1431 1254 41 7 0 chr5 110924537 110924683 -41612576 - B1_Mm SINE Alu 0 147 1 9 1431 240 221 143 0 chr5 110924807 110924884 -41612375 + MLT1C LTR MaLR 34 121 -346 9 1431 321 276 61 0 chr5 110924905 110925003 -41612256 + MLT1C LTR MaLR 178 281 -186 9 1431 184 284 72 21 chr5 110927753 110927850 -41609409 + L2b LINE L2 3180 3281 -94 9 1431 250 311 55 39 chr5 110927885 110928012 -41609247 - MLT1E1 LTR MaLR -15 639 511 9 1431 211 108 60 30 chr5 110930187 110930254 -41607005 + (TGGA)n Simple_repeat Simple_repeat 3 71 0 9 1431 2112 153 128 5 chr5 110931098 110931473 -41605786 - MTC LTR MaLR 0 421 1 9 1431 480 267 0 0 chr5 110931537 110931717 -41605542 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1431 260 210 0 190 chr5 110931717 110931817 -41605442 - B4A SINE B4 0 292 212 9 1431 936 271 39 0 chr5 110931835 110932038 -41605221 - B3 SINE B2 -5 211 1 9 1431 654 176 16 86 chr5 110932074 110932215 -41605044 - B3 SINE B2 -1 215 74 9 1431 834 264 57 19 chr5 110932230 110932442 -41604817 - B4A SINE B4 -68 224 5 9 1431 287 130 19 0 chr5 110932996 110933050 -41604209 + (TGG)n Simple_repeat Simple_repeat 3 57 0 9 1431 941 122 0 54 chr5 110933053 110933201 -41604058 - B1_Mur3 SINE Alu -7 142 3 9 1431 289 200 0 0 chr5 110933205 110933270 -41603989 - B3 SINE B2 -6 210 146 9 1431 2534 81 3 12 chr5 110933769 110934096 -41603163 + ORR1A2 LTR MaLR 3 326 -1 9 1431 673 148 17 25 chr5 110934107 110934225 -41603034 - B1_Mur1 SINE Alu -6 143 27 9 1431 941 61 104 22 chr5 110934233 110934368 -41602891 - B1_Mm SINE Alu 0 147 2 9 1431 2448 131 89 30 chr5 110935531 110935971 -41601288 - RMER4A LTR ERVK 0 466 1 9 1431 198 246 87 0 chr5 110936123 110936192 -41601067 + L2b LINE L2 2994 3068 -307 9 1431 508 184 100 20 chr5 110936462 110936562 -41600697 + PB1D9 SINE Alu 1 108 -12 9 1431 351 65 0 0 chr5 110937413 110937459 -41599800 + (TTA)n Simple_repeat Simple_repeat 2 47 0 9 1431 402 214 37 84 chr5 110937459 110937566 -41599693 - PB1D9 SINE Alu -12 108 7 9 1431 225 330 48 39 chr5 110937492 110937596 -41599663 - B4A SINE B4 -123 169 65 9 1431 339 127 0 0 chr5 110937674 110937737 -41599522 + (TC)n Simple_repeat Simple_repeat 2 64 0 9 1431 395 115 0 37 chr5 110937722 110937803 -41599456 + T-rich Low_complexity Low_complexity 1 78 0 9 1431 900 168 0 7 chr5 110937821 110937965 -41599294 - B1_Mus1 SINE Alu 0 148 6 9 1431 1104 37 67 0 chr5 110938200 110938335 -41598924 + B1_Mm SINE Alu 2 145 -2 9 1431 510 337 67 22 chr5 110938607 110938786 -41598473 - B3A SINE B2 -11 187 1 9 1431 256 299 0 0 chr5 110938927 110938994 -41598265 - MLT2D LTR ERVL -107 453 387 9 1431 300 224 17 0 chr5 110939584 110939642 -41597617 + ID SINE ID 2 60 -164 9 1431 351 268 14 0 chr5 110939693 110939764 -41597495 + RSINE1 SINE B4 3 74 -91 9 1431 255 296 85 12 chr5 110939764 110939775 -41597484 + BC1_Mm scRNA scRNA 2 89 -63 9 1431 232 191 0 0 chr5 110939891 110939933 -41597326 + ID_B1 SINE B4 181 222 -2 9 1431 542 210 93 78 chr5 110939939 110940046 -41597213 + B1_Mur2 SINE Alu 19 129 -20 9 1431 260 0 57 0 chr5 110940046 110940081 -41597178 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 9 1431 542 210 93 78 chr5 110940081 110940102 -41597157 + B1_Mur2 SINE Alu 130 149 0 9 1431 332 256 0 0 chr5 110940098 110940176 -41597083 + ID_B1 SINE B4 145 222 -2 9 1431 401 240 83 46 chr5 110940197 110940306 -41596953 + 5S rRNA rRNA 8 120 -1 9 1431 677 244 136 6 chr5 110940342 110940511 -41596748 + B3A SINE B2 2 192 -6 9 1431 452 252 3 0 chr5 110940511 110940612 -41596647 + B1_Mur3 SINE Alu 5 107 -13 9 1431 300 53 0 0 chr5 110940614 110940652 -41596607 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 9 1431 328 192 165 13 chr5 110940652 110940731 -41596528 + B2_Mm2 SINE B2 2 92 -103 9 1431 513 100 0 0 chr5 110940742 110940832 -41596427 + (TC)n Simple_repeat Simple_repeat 2 91 0 9 1431 395 232 10 20 chr5 110940836 110940937 -41596322 + B3 SINE B2 117 216 0 9 1431 301 362 12 24 chr5 110941007 110941208 -41596051 + (TATATG)n Simple_repeat Simple_repeat 1 198 0 9 1431 3469 25 2 8 chr5 110942389 110942787 -41594472 - MTA_Mm LTR MaLR 0 396 1 9 1431 329 211 31 72 chr5 110942804 110942901 -41594358 + MTEb LTR MaLR 279 371 -8 9 1431 290 311 209 41 chr5 110942918 110943186 -41594073 + MLT1K LTR MaLR 283 595 0 9 1431 702 263 135 16 chr5 110943217 110943410 -41593849 - B3 SINE B2 0 216 1 9 1431 774 0 0 0 chr5 110946163 110946249 -41591010 + (TTTCC)n Simple_repeat Simple_repeat 5 90 0 9 1431 307 265 158 7 chr5 110946286 110946438 -41590821 - ID_B1 SINE B4 0 224 50 9 1431 23 0 0 0 chr5 110946438 110946461 -41590798 + AT_rich Low_complexity Low_complexity 1 23 0 9 1431 945 53 105 0 chr5 110946463 110946596 -41590663 - B1_Mus1 SINE Alu 0 148 2 9 1431 454 218 48 0 chr5 110946793 110946893 -41590366 - B1F SINE Alu -13 107 2 9 1431 237 305 63 0 chr5 110946984 110947079 -41590180 - MLT1K LTR MaLR -86 509 409 9 1431 288 148 0 0 chr5 110947920 110947981 -41589278 + (TC)n Simple_repeat Simple_repeat 1 61 0 9 1431 3087 86 14 2 chr5 110947981 110948423 -41588836 - Lx2 LINE L1 -7 6990 6544 9 1431 207 0 0 0 chr5 110948741 110948764 -41588495 + (TGAG)n Simple_repeat Simple_repeat 2 24 0 9 1431 1189 41 0 0 chr5 110949645 110949791 -41587468 - B1_Mm SINE Alu 0 147 2 9 1431 1184 101 6 0 chr5 110950675 110950853 -41586406 + (GA)n Simple_repeat Simple_repeat 2 180 0 9 1431 403 56 0 0 chr5 110953245 110953299 -41583960 + B1_Mus1 SINE Alu 2 55 -93 9 1431 295 131 48 16 chr5 110953246 110953308 -41583951 + ID_B1 SINE B4 84 147 -77 9 1431 255 0 0 160 chr5 110953308 110953439 -41583820 + (CAGAG)n Simple_repeat Simple_repeat 1 110 0 9 1431 251 168 112 56 chr5 110953440 110953547 -41583712 + RLTR25B LTR ERVK 397 509 -519 9 1431 819 38 0 0 chr5 110953484 110953590 -41583669 + B1_Mus2 SINE Alu 42 147 0 9 1431 366 123 0 0 chr5 110953590 110953647 -41583612 + (A)n Simple_repeat Simple_repeat 1 57 0 9 1431 549 0 0 0 chr5 110953649 110953710 -41583549 + (GA)n Simple_repeat Simple_repeat 2 62 0 9 1431 471 288 52 12 chr5 110953852 110954024 -41583235 + (CATG)n Simple_repeat Simple_repeat 2 180 0 9 1431 250 226 80 45 chr5 110954498 110954586 -41582673 - MLT1A1 LTR MaLR 0 408 318 9 1431 264 319 52 0 chr5 110954773 110954889 -41582370 + RMER4B LTR ERVK 13 134 -451 9 1431 208 121 0 0 chr5 110955088 110955121 -41582138 + (G)n Simple_repeat Simple_repeat 1 33 0 9 1431 1237 63 34 6 chr5 110955988 110956163 -41581096 + B2_Mm1t SINE B2 1 180 -13 9 1431 359 91 0 18 chr5 110956175 110956231 -41581028 + B2_Mm2 SINE B2 47 101 -94 9 1431 24 0 0 0 chr5 110956337 110956361 -41580898 + AT_rich Low_complexity Low_complexity 1 24 0 9 1431 235 305 138 38 chr5 110956379 110956539 -41580720 - MLT1A1 LTR MaLR -348 247 72 9 1431 464 176 229 25 chr5 110956561 110956683 -41580576 + B1_Mus1 SINE Alu 1 147 -1 9 1431 491 158 30 0 chr5 110957034 110957135 -41580124 + (ATGGTG)n Simple_repeat Simple_repeat 4 107 0 9 1431 492 289 8 8 chr5 110957141 110957270 -41579989 + B4A SINE B4 128 256 -36 1 1431 1057 70 0 27 chr5 110957271 110957419 -41579840 + B1_Mus1 SINE Alu 1 144 -4 1 1431 244 0 27 27 chr5 110957424 110957461 -41579798 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1431 211 200 0 43 chr5 110957489 110957536 -41579723 + (CATA)n Simple_repeat Simple_repeat 3 47 0 1 1431 566 182 111 0 chr5 110958432 110958558 -41578701 - MTD LTR MaLR -279 140 1 1 1431 3707 50 125 12 chr5 110958888 110959393 -41577866 - LTRIS2 LTR ERV1 0 564 3 1 1431 250 184 13 13 chr5 110959709 110959786 -41577473 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1431 337 324 11 23 chr5 110959792 110959969 -41577290 + (CATA)n Simple_repeat Simple_repeat 1 175 0 1 1431 233 186 34 0 chr5 110961259 110961318 -41575941 + CT-rich Low_complexity Low_complexity 3 63 0 1 1431 867 108 0 0 chr5 110961758 110961887 -41575372 + (TTCC)n Simple_repeat Simple_repeat 4 132 0 1 1431 1211 27 0 7 chr5 110961894 110962041 -41575218 - B1_Mus1 SINE Alu -2 146 1 1 1431 30 45 0 0 chr5 110962462 110962506 -41574753 + AT_rich Low_complexity Low_complexity 1 44 0 1 1431 756 181 7 46 chr5 110962512 110962663 -41574596 + B1_Mur4 SINE Alu 6 150 0 1 1431 632 258 11 53 chr5 110962713 110962901 -41574358 - B3A SINE B2 -16 182 3 1 1431 676 244 75 16 chr5 110963507 110963694 -41573565 + B3A SINE B2 1 198 0 1 1431 824 200 0 0 chr5 110963713 110963853 -41573406 - B1_Mur1 SINE Alu -8 141 2 1 1431 269 302 0 23 chr5 110964001 110964027 -41573232 + polypyrimidine Low_complexity Low_complexity 64 89 0 1 1431 1189 34 0 0 chr5 110964027 110964173 -41573086 - B1_Mus2 SINE Alu 0 147 2 1 1431 269 302 0 23 chr5 110964173 110964234 -41573025 + polypyrimidine Low_complexity Low_complexity 5 63 0 1 1431 734 172 6 28 chr5 110964234 110964413 -41572846 + CT-rich Low_complexity Low_complexity 2 176 0 1 1431 243 358 65 33 chr5 110965625 110965778 -41571481 - MLT1K LTR MaLR -4 591 434 1 1431 342 280 78 31 chr5 110965836 110965965 -41571294 + MER82 DNA MER2_type 70 204 -449 1 1431 1092 78 0 0 chr5 110965975 110966117 -41571142 - B1_Mus1 SINE Alu -5 143 2 1 1431 377 97 302 50 chr5 110966131 110966250 -41571009 - B2_Mm2 SINE B2 0 195 47 1 1431 1190 119 40 0 chr5 110966312 110966488 -41570771 - B2_Mm2 SINE B2 -12 183 1 1 1431 503 244 75 75 chr5 110967526 110967826 -41569433 + ERVL-B4-int LTR ERVL 2150 2449 -3265 1 1431 577 308 187 20 chr5 110967962 110968357 -41568902 + MERVL_2A-int LTR ERVL 4655 5115 -646 1 1431 452 241 72 37 chr5 110968671 110968864 -41568395 - B3 SINE B2 0 216 2 1 1431 294 198 34 0 chr5 110968973 110969039 -41568220 + MTEb LTR MaLR 57 124 -255 1 1431 683 131 0 0 chr5 110969086 110969193 -41568066 + B1_Mur1 SINE Alu 21 127 -22 1 1431 403 113 0 0 chr5 110969193 110969255 -41568004 + B1F SINE Alu 70 131 -18 1 1431 839 220 79 44 chr5 110969225 110969453 -41567806 + MTEb LTR MaLR 144 379 0 1 1431 298 356 42 33 chr5 110970212 110970427 -41566832 + MIR SINE MIR 8 224 -38 1 1431 603 184 14 8 chr5 110971733 110971873 -41565386 - B1_Mus2 SINE Alu 0 149 7 1 1431 345 301 0 40 chr5 110972076 110972228 -41565031 + (CA)n Simple_repeat Simple_repeat 2 147 0 1 1431 243 303 6 50 chr5 110972265 110972425 -41564834 + (CATATA)n Simple_repeat Simple_repeat 2 154 0 1 1431 214 384 0 22 chr5 110972368 110972504 -41564755 + (CA)n Simple_repeat Simple_repeat 2 134 0 1 1431 329 299 0 0 chr5 110972593 110972670 -41564589 - L2a LINE L2 0 3426 3350 1 1431 23 33 0 0 chr5 110973264 110973294 -41563965 + GC_rich Low_complexity Low_complexity 1 30 0 1 1431 669 204 13 39 chr5 110977144 110977297 -41559962 - B1_Mur2 SINE Alu 0 149 1 1 1431 489 225 85 8 chr5 110977422 110977552 -41559707 - B1_Mur3 SINE Alu -1 148 9 1 1431 240 314 32 63 chr5 110977465 110977591 -41559668 - MT2B2 LTR ERVL -326 258 137 1 1431 252 0 0 0 chr5 110979320 110979348 -41557911 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1431 472 264 3 19 chr5 110979426 110979545 -41557714 + B3 SINE B2 4 121 -95 1 1431 941 159 7 7 chr5 110979603 110979885 -41557374 + GA-rich Low_complexity Low_complexity 1 282 0 1 1431 453 331 114 53 chr5 110980643 110980804 -41556455 + MLT1C LTR MaLR 1 182 -285 1 1431 793 232 39 0 chr5 110980804 110980985 -41556274 + B3A SINE B2 1 188 -10 1 1431 453 331 114 53 chr5 110980985 110981199 -41556060 + MLT1C LTR MaLR 183 399 -68 1 1431 848 154 0 7 chr5 110981388 110981532 -41555727 - URR1B DNA MER1_type 0 225 83 1 1431 554 211 6 0 chr5 110981770 110981945 -41555314 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1431 824 224 11 6 chr5 110981955 110982135 -41555124 - B3A SINE B2 -16 182 2 1 1431 2295 96 12 6 chr5 110983326 110983651 -41553608 + ORR1A2 LTR MaLR 1 327 0 1 1431 817 179 14 0 chr5 110985005 110985145 -41552114 - B1_Mur4 SINE Alu -8 142 1 1 1431 483 155 0 0 chr5 110986192 110986295 -41550964 + CT-rich Low_complexity Low_complexity 1 103 0 1 1431 2862 110 69 119 chr5 110986427 110987034 -41550225 + MT2B2 LTR ERVL 1 577 -7 1 1431 185 274 0 12 chr5 110987691 110987776 -41549483 + CT-rich Low_complexity Low_complexity 2 85 0 1 1431 394 239 120 23 chr5 110987869 110988002 -41549257 - B1_Mus2 SINE Alu -1 146 1 1 1431 279 0 0 0 chr5 110988132 110988163 -41549096 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1431 223 173 59 16 chr5 110988271 110988333 -41548926 - MIRb SINE MIR -174 102 35 1 1431 1092 58 0 0 chr5 110988446 110988583 -41548676 + B1_Mm SINE Alu 2 138 -9 1 1431 731 229 25 37 chr5 110988612 110988775 -41548484 - RSINE1 SINE B4 0 165 5 1 1431 656 208 130 23 chr5 110989330 110989507 -41547752 - B3A SINE B2 0 198 3 1 1431 282 289 110 19 chr5 110989791 110989946 -41547313 + MIRb SINE MIR 50 218 -50 1 1431 468 208 0 0 chr5 110990073 110990179 -41547080 + (TGGA)n Simple_repeat Simple_repeat 4 109 0 1 1431 1385 85 0 5 chr5 110991264 110991453 -41545806 - B2_Mm2 SINE B2 -5 190 3 1 1431 262 271 32 0 chr5 110994816 110994887 -41542372 + B1F1 SINE Alu 1 73 -44 1 1431 993 237 10 0 chr5 110995087 110995294 -41541965 - B3 SINE B2 0 216 8 1 1431 255 279 60 83 chr5 110995276 110995409 -41541850 - MER5A DNA MER1_type -59 130 1 1 1431 232 243 17 93 chr5 110995691 110995809 -41541450 + L1MEd LINE L1 943 1051 -5085 1 1431 321 26 0 0 chr5 110996012 110996050 -41541209 + (CACCC)n Simple_repeat Simple_repeat 5 42 0 1 1431 1389 49 0 0 chr5 110996170 110996481 -41540778 + (CTA)n Simple_repeat Simple_repeat 1 311 0 1 1431 200 61 0 57 chr5 110996481 110996516 -41540743 + (CCCCCT)n Simple_repeat Simple_repeat 5 37 0 1 1431 462 278 24 79 chr5 110997359 110997523 -41539736 + RSINE1 SINE B4 1 155 -10 1 1431 817 208 0 7 chr5 110997564 110997714 -41539545 + B1_Mur3 SINE Alu 1 149 0 1 1431 360 288 192 22 chr5 110997893 110998117 -41539142 + L1MEd LINE L1 2949 3210 -2936 1 1431 216 67 0 0 chr5 110998351 110998381 -41538878 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1431 599 306 81 10 chr5 110998881 110999088 -41538171 - B3A SINE B2 -11 205 1 1 1431 430 304 130 12 chr5 111000075 111000321 -41536938 - MLT1C LTR MaLR -95 372 98 1 1431 1078 258 164 6 chr5 111001284 111001596 -41535663 + MTEa LTR MaLR 19 379 0 2 1431 773 227 40 35 chr5 111002127 111002328 -41534931 + B3 SINE B2 15 216 0 3 1431 351 0 0 0 chr5 111002328 111002367 -41534892 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1431 1092 97 0 0 chr5 111002369 111002513 -41534746 - B1_Mus1 SINE Alu -4 144 1 5 1431 21 57 0 0 chr5 111002522 111002557 -41534702 + AT_rich Low_complexity Low_complexity 1 35 0 6 1431 186 43 0 0 chr5 111002682 111002705 -41534554 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 7 1431 310 384 40 18 chr5 111002835 111003058 -41534201 + HAL1 LINE L1 1584 1811 -696 8 1431 1169 61 0 0 chr5 111003341 111003488 -41533771 + B1_Mus1 SINE Alu 2 148 0 9 1431 588 95 0 0 chr5 111003512 111003596 -41533663 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 1 1431 237 157 39 0 chr5 111004442 111004493 -41532766 + B1F SINE Alu 84 136 -13 1 1431 886 116 35 21 chr5 111005038 111005179 -41532080 - B1_Mur4 SINE Alu -7 143 1 1 1431 411 294 96 0 chr5 111005295 111005431 -41531828 - RSINE1 SINE B4 -16 149 1 1 1431 668 45 11 0 chr5 111005452 111005540 -41531719 + (TC)n Simple_repeat Simple_repeat 2 90 0 1 1431 251 114 0 22 chr5 111005540 111005585 -41531674 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 1 1431 476 48 35 24 chr5 111005588 111005673 -41531586 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 1 1431 1967 236 33 50 chr5 111005673 111006269 -41530990 - Lx6 LINE L1 -31 7429 6486 1 1431 277 227 7 7 chr5 111006731 111006873 -41530386 + CT-rich Low_complexity Low_complexity 2 143 0 1 1431 648 125 53 12 chr5 111006860 111007030 -41530229 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 1 1431 402 225 6 11 chr5 111007068 111007248 -41530011 + CT-rich Low_complexity Low_complexity 1 179 0 2 1431 223 125 40 40 chr5 111007248 111007298 -41529961 + (TCTCTG)n Simple_repeat Simple_repeat 4 53 0 2 1431 235 81 54 0 chr5 111007255 111007292 -41529967 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 2 1431 758 157 0 6 chr5 111007299 111007478 -41529781 + CT-rich Low_complexity Low_complexity 1 178 0 2 1431 479 242 0 0 chr5 111010372 111010471 -41526788 - PB1D10 SINE Alu -17 100 2 2 1431 297 0 0 0 chr5 111011370 111011403 -41525856 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1431 372 43 0 0 chr5 111011448 111011494 -41525765 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 2 1431 255 352 86 0 chr5 111014801 111014906 -41522353 + MLT1C LTR MaLR 1 114 -353 2 1431 332 143 0 51 chr5 111014983 111015042 -41522217 - HAL1-3A_ME LINE L1 -828 2030 1975 2 1431 225 154 0 0 chr5 111015042 111015081 -41522178 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1431 513 297 25 0 chr5 111015123 111015241 -41522018 - RSINE1 SINE B4 -15 150 30 3 1431 662 224 22 0 chr5 111015627 111015761 -41521498 - B1F SINE Alu -2 147 11 3 1431 1026 171 38 38 chr5 111015794 111016007 -41521252 - B3 SINE B2 -3 213 1 3 1431 277 155 13 90 chr5 111016058 111016136 -41521123 - MTC LTR MaLR -24 395 324 3 1431 810 203 36 62 chr5 111016125 111016319 -41520940 - MTC LTR MaLR -232 189 1 3 1431 260 261 15 44 chr5 111016324 111016392 -41520867 - ID_B1 SINE B4 -36 188 123 3 1431 544 152 0 36 chr5 111016887 111017024 -41520235 + (CCCTAA)n Simple_repeat Simple_repeat 3 134 0 3 178 1050 227 62 0 chr5 111017742 111018013 -41519246 - MTEb LTR MaLR 0 379 75 3 1432 338 236 90 0 chr5 111018013 111018102 -41519157 - L1MB3 LINE L1 -36 6147 6051 3 1432 563 274 0 16 chr5 111018123 111018249 -41519010 - B1F SINE Alu -18 131 8 3 1432 2074 73 3 89 chr5 111020214 111020497 -41516762 + ORR1A2 LTR MaLR 10 286 -41 3 1432 1181 41 0 7 chr5 111020497 111020645 -41516614 + B1_Mus2 SINE Alu 1 147 0 4 1432 2074 73 3 89 chr5 111020645 111020709 -41516550 + ORR1A2 LTR MaLR 287 327 0 3 1432 9959 133 86 15 chr5 111020709 111022542 -41514717 + ORR1A2-int LTR MaLR 1 1962 -1 3 1432 2099 80 90 0 chr5 111022543 111022843 -41514416 + ORR1A2 LTR MaLR 1 327 0 3 1432 921 170 16 27 chr5 111022941 111023128 -41514131 - B2_Mm2 SINE B2 -9 186 2 4 1432 616 250 59 0 chr5 111023191 111023327 -41513932 - RSINE1 SINE B4 -19 146 3 4 1432 392 256 17 44 chr5 111025503 111025683 -41511576 + (CAGAGA)n Simple_repeat Simple_repeat 2 176 0 4 1432 220 215 19 0 chr5 111025702 111025809 -41511450 + GA-rich Low_complexity Low_complexity 2 110 0 4 1432 22 0 0 0 chr5 111027226 111027248 -41510011 + AT_rich Low_complexity Low_complexity 1 22 0 4 1432 242 294 82 25 chr5 111027398 111027520 -41509739 + L1M5 LINE L1 5561 5689 -475 4 1432 328 207 24 16 chr5 111028748 111028871 -41508388 + CT-rich Low_complexity Low_complexity 3 126 0 4 1432 389 234 0 50 chr5 111028888 111028987 -41508272 - PB1D9 SINE Alu -8 112 19 4 1432 718 143 0 15 chr5 111029045 111029180 -41508079 + GA-rich Low_complexity Low_complexity 2 134 0 4 1432 228 67 0 0 chr5 111029178 111029208 -41508051 + (CGA)n Simple_repeat Simple_repeat 2 31 0 5 1432 565 153 16 48 chr5 111030886 111031010 -41506249 - PB1D9 SINE Alu 0 120 1 5 1432 246 62 0 0 chr5 111033888 111033920 -41503339 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 5 1432 1191 65 0 0 chr5 111033920 111034075 -41503184 - B2_Mm2 SINE B2 -38 157 3 5 1432 1084 95 0 0 chr5 111034460 111034607 -41502652 - B1_Mus1 SINE Alu 0 148 2 5 1432 1128 238 132 29 chr5 111036137 111036448 -41500811 - MTEa LTR MaLR -33 346 4 5 1432 887 158 0 14 chr5 111037760 111037901 -41499358 + B1_Mur4 SINE Alu 3 141 -9 5 1432 407 237 21 70 chr5 111040088 111040274 -41496985 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 5 1432 517 175 41 6 chr5 111040302 111040474 -41496785 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1432 209 242 31 0 chr5 111040996 111041124 -41496135 + (TG)n Simple_repeat Simple_repeat 2 133 0 5 1432 1477 27 27 0 chr5 111041140 111041323 -41495936 + B2_Mm1a SINE B2 2 189 -4 6 1432 268 284 0 0 chr5 111041325 111041399 -41495860 + (TATG)n Simple_repeat Simple_repeat 3 76 0 6 1432 252 233 0 0 chr5 111041427 111041500 -41495759 + (TATG)n Simple_repeat Simple_repeat 4 76 0 6 1432 604 181 28 0 chr5 111041531 111041675 -41495584 + (TATG)n Simple_repeat Simple_repeat 3 150 0 6 1432 348 196 29 19 chr5 111041694 111041798 -41495461 + (TATG)n Simple_repeat Simple_repeat 1 105 0 6 1432 311 298 132 0 chr5 111041923 111042037 -41495222 + ORR1E LTR MaLR 1 129 -230 6 1432 354 355 36 79 chr5 111042326 111042656 -41494603 - ORR1D2 LTR MaLR -12 358 43 6 1432 429 20 0 0 chr5 111043576 111043626 -41493633 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1432 258 255 52 43 chr5 111043695 111043810 -41493449 - PB1D9 SINE Alu -3 117 2 6 1432 797 239 0 0 chr5 111044719 111044874 -41492385 + RSINE1 SINE B4 3 157 -8 6 1432 556 208 136 0 chr5 111044894 111045019 -41492240 - B1_Mur3 SINE Alu -6 143 2 6 1432 217 346 19 0 chr5 111045186 111045290 -41491969 + (CATG)n Simple_repeat Simple_repeat 1 106 0 6 1432 192 152 0 0 chr5 111045291 111045324 -41491935 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 6 1432 194 284 69 59 chr5 111047124 111047225 -41490034 + MIR SINE MIR 94 195 -67 7 1432 255 31 0 0 chr5 111047272 111047304 -41489955 + (TTA)n Simple_repeat Simple_repeat 2 33 0 7 1432 1052 85 0 25 chr5 111047304 111047461 -41489798 - B2_Mm2 SINE B2 -41 154 2 7 1432 602 249 180 63 chr5 111048394 111048711 -41488548 - MTEb LTR MaLR -22 357 4 7 1432 355 269 37 28 chr5 111050352 111050459 -41486800 + MER58A DNA MER1_type 34 141 -83 7 1432 495 0 0 0 chr5 111051213 111051268 -41485991 + (TC)n Simple_repeat Simple_repeat 1 55 0 7 1432 189 0 0 0 chr5 111051272 111051293 -41485966 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 7 1432 239 157 78 0 chr5 111051317 111051368 -41485891 - B2_Mm2 SINE B2 -94 101 47 7 1432 1029 62 7 7 chr5 111051466 111051611 -41485648 - B2_Mm2 SINE B2 -50 145 1 7 1432 1092 69 7 0 chr5 111051721 111051866 -41485393 - B1_Mus2 SINE Alu 0 147 2 7 1432 629 124 26 0 chr5 111052929 111053042 -41484217 + A-rich Low_complexity Low_complexity 3 118 0 8 1432 783 66 0 0 chr5 111053245 111053351 -41483908 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 8 1432 1348 33 65 11 chr5 111053418 111053603 -41483656 + B2_Mm2 SINE B2 1 195 0 8 1432 345 356 132 16 chr5 111054083 111054462 -41482797 - MLT1C LTR MaLR 0 467 45 8 1432 314 280 0 39 chr5 111054572 111054676 -41482583 + PB1D10 SINE Alu 3 102 -15 8 1432 568 155 41 1 chr5 111054786 111054899 -41482360 + B1_Mur3 SINE Alu 3 118 -2 8 1432 233 247 156 0 chr5 111054935 111055012 -41482247 - MER82 DNA MER2_type -524 129 41 8 1432 1074 69 119 0 chr5 111055308 111055468 -41481791 + B2_Mm1t SINE B2 1 179 -14 8 1432 287 143 0 0 chr5 111055519 111055568 -41481691 + B2_Mm2 SINE B2 47 95 -100 8 1432 1333 95 11 0 chr5 111055600 111055789 -41481470 + B2_Mm1t SINE B2 2 192 -1 8 1432 204 191 0 0 chr5 111055809 111055825 -41481434 + A-rich Low_complexity Low_complexity 2 17 0 9 1432 1169 56 0 0 chr5 111055825 111055968 -41481291 + B1_Mus1 SINE Alu 1 143 -5 9 1432 204 191 0 0 chr5 111055968 111055998 -41481261 + A-rich Low_complexity Low_complexity 18 47 0 9 1432 559 101 0 0 chr5 111056109 111056188 -41481071 + B2_Mm1t SINE B2 68 146 -47 9 1432 21 0 0 0 chr5 111056458 111056479 -41480780 + AT_rich Low_complexity Low_complexity 1 21 0 9 1432 189 0 0 0 chr5 111056771 111056792 -41480467 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 9 1432 1174 42 0 20 chr5 111056933 111057079 -41480180 + B1_Mus1 SINE Alu 5 147 -1 9 1432 207 100 0 0 chr5 111057627 111057657 -41479602 + (CCCCCA)n Simple_repeat Simple_repeat 6 35 0 9 1432 2663 123 14 67 chr5 111058085 111058530 -41478729 + MTC LTR MaLR 1 421 0 9 1432 2343 148 128 18 chr5 111058530 111058984 -41478275 + MTC-int LTR MaLR 3 506 -752 9 1432 2334 194 58 22 chr5 111058986 111059371 -41477888 + MTC-int LTR MaLR 665 1068 -190 9 1432 871 147 0 53 chr5 111059371 111059522 -41477737 - B1_Mur3 SINE Alu -6 143 1 9 1432 2334 194 58 22 chr5 111059522 111059670 -41477589 + MTC-int LTR MaLR 1069 1217 -41 9 1432 821 174 6 75 chr5 111059701 111059862 -41477397 - B1_Mur4 SINE Alu 0 150 1 1 1432 1561 226 66 61 chr5 111059916 111060091 -41477168 + MTC LTR MaLR 24 208 -213 9 1432 1378 84 5 5 chr5 111060091 111060283 -41476976 + B2_Mm1a SINE B2 2 193 0 1 1432 1561 226 66 61 chr5 111060283 111060503 -41476756 + MTC LTR MaLR 209 421 0 9 1432 854 257 48 5 chr5 111060503 111060691 -41476568 + B4 SINE B4 97 292 0 1 1432 237 143 0 0 chr5 111060742 111060784 -41476475 - MT2A LTR ERVL -8 525 484 1 1432 841 125 0 23 chr5 111060828 111060959 -41476300 + B1_Mus2 SINE Alu 20 147 0 1 1432 252 186 0 0 chr5 111060959 111061018 -41476241 + A-rich Low_complexity Low_complexity 1 59 0 1 1432 1389 224 20 10 chr5 111061074 111061372 -41475887 - MT2A LTR ERVL -44 489 189 1 1432 499 161 0 12 chr5 111061419 111061501 -41475758 - MT2A LTR ERVL -452 81 1 1 1432 377 279 11 11 chr5 111061502 111061589 -41475670 + RSINE1 SINE B4 3 89 -76 1 1432 1155 62 0 14 chr5 111061674 111061820 -41475439 + B1_Mus2 SINE Alu 3 146 -1 1 1432 230 311 164 24 chr5 111061875 111062040 -41475219 + MLT1D LTR MaLR 242 429 -76 1 1432 828 225 49 6 chr5 111062072 111062255 -41475004 - B3A SINE B2 -7 191 1 1 1432 406 229 23 41 chr5 111063356 111063482 -41473777 - B1F SINE Alu 0 120 3 1 1432 26 0 0 0 chr5 111063528 111063554 -41473705 + AT_rich Low_complexity Low_complexity 1 26 0 1 1432 379 247 15 40 chr5 111063602 111063717 -41473542 - RSINE1 SINE B4 -21 144 30 1 1432 282 295 26 32 chr5 111063728 111063882 -41473377 + (CATA)n Simple_repeat Simple_repeat 4 156 0 1 1432 2363 173 86 38 chr5 111064163 111064661 -41472598 - RLTR11A LTR ERVK 0 528 7 1 1432 223 178 0 0 chr5 111065022 111065067 -41472192 + T-rich Low_complexity Low_complexity 1 45 0 1 1432 248 160 80 0 chr5 111065340 111065390 -41471869 + B4A SINE B4 82 135 -157 1 1432 612 131 25 202 chr5 111065348 111065511 -41471748 + B1_Mur3 SINE Alu 8 141 -8 1 1432 1063 80 204 0 chr5 111067450 111067612 -41469647 + B2_Mm2 SINE B2 1 195 0 1 1432 1295 190 82 40 chr5 111067771 111068099 -41469160 + BGLII_B LTR ERVK 21 362 -79 1 1432 384 22 0 0 chr5 111068390 111068435 -41468824 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1432 996 71 0 0 chr5 111068828 111068954 -41468305 + B1_Mus1 SINE Alu 23 148 0 1 1432 331 24 0 0 chr5 111069487 111069528 -41467731 + B2_Mm2 SINE B2 1 41 -154 1 1432 1251 41 0 7 chr5 111069528 111069677 -41467582 + B1_Mus1 SINE Alu 1 148 0 1 1432 6364 264 58 55 chr5 111069677 111070276 -41466983 + MYSERV6-int LTR ERVK 694 1299 -7660 1 1432 1172 88 0 0 chr5 111070276 111070424 -41466835 + B1_Mus1 SINE Alu 1 148 0 1 1432 6364 264 58 55 chr5 111070424 111071085 -41466174 + MYSERV6-int LTR ERVK 1300 1988 -6971 1 1432 1217 62 0 0 chr5 111071085 111071231 -41466028 + B1_Mus2 SINE Alu 1 146 -1 1 1432 6364 264 58 55 chr5 111071231 111071349 -41465910 + MYSERV6-int LTR ERVK 1989 2088 -6871 1 1432 4473 71 20 30 chr5 111071349 111071942 -41465317 + LTRIS_Mus LTR ERV1 1 587 0 1 1432 6364 264 58 55 chr5 111071942 111072982 -41464277 + MYSERV6-int LTR ERVK 2089 3121 -5838 1 1432 294 172 17 0 chr5 111073046 111073104 -41464155 + MER53 DNA hAT 71 129 -64 1 1432 507 290 33 82 chr5 111073117 111073157 -41464102 + B3A SINE B2 2 37 -161 1 1432 1260 48 0 0 chr5 111073157 111073303 -41463956 + B1_Mus2 SINE Alu 1 146 -1 1 1432 507 290 33 82 chr5 111073303 111073328 -41463931 + B3A SINE B2 38 53 -145 1 1432 1384 95 26 0 chr5 111073328 111073518 -41463741 - B2_Mm2 SINE B2 0 195 1 1 1432 730 245 7 27 chr5 111073518 111073665 -41463594 + B3 SINE B2 54 197 -19 1 1432 248 139 0 0 chr5 111073676 111073712 -41463547 - MTC LTR MaLR -85 336 301 1 1432 1813 243 86 33 chr5 111073727 111074634 -41462625 - Lx5 LINE L1 -574 6886 5813 1 1432 1171 95 0 12 chr5 111074641 111074811 -41462448 - B2_Mm2 SINE B2 -4 191 24 1 1432 1009 131 8 3 chr5 111074814 111074990 -41462269 - Lx4A LINE L1 -334 5828 5639 1 1432 1249 48 0 0 chr5 111075019 111075164 -41462095 + B1_Mm SINE Alu 1 145 -2 1 1432 505 156 0 43 chr5 111075195 111075289 -41461970 - B1_Mur4 SINE Alu -49 101 12 1 1432 982 113 33 17 chr5 111075299 111075479 -41461780 + MTC-int LTR MaLR 1076 1258 0 1 1432 1379 153 0 0 chr5 111075479 111075688 -41461571 + MTC LTR MaLR 1 209 -212 1 1432 653 184 52 17 chr5 111075688 111075804 -41461455 + B1_Mur4 SINE Alu 1 120 -30 1 1432 751 180 129 43 chr5 111075740 111075949 -41461310 + MTC LTR MaLR 186 412 -9 1 1432 1116 287 75 79 chr5 111075953 111076622 -41460637 + RMER15-int LTR ERVL 3085 3750 -1249 1 1432 855 135 56 14 chr5 111077426 111077569 -41459690 + B1_Mur4 SINE Alu 1 149 -1 1 1432 218 93 45 23 chr5 111077572 111077616 -41459643 + (CAAAC)n Simple_repeat Simple_repeat 2 46 0 1 1432 721 216 115 0 chr5 111077623 111077771 -41459488 + B3 SINE B2 35 199 -17 1 1432 334 253 88 0 chr5 111077760 111077851 -41459408 + PB1D10 SINE Alu 19 117 0 1 1432 495 0 0 0 chr5 111081717 111081772 -41455487 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1432 261 0 0 0 chr5 111081772 111081800 -41455459 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1432 646 222 23 16 chr5 111087361 111087489 -41449770 - B3 SINE B2 -5 211 83 1 1432 858 206 116 5 chr5 111088391 111088581 -41448678 - B3 SINE B2 -4 212 2 1 1432 636 145 119 22 chr5 111088683 111088817 -41448442 - B1_Mur3 SINE Alu -1 148 2 1 1432 892 284 199 23 chr5 111088963 111089629 -41447630 - Lx7 LINE L1 -29 7444 6622 1 1432 528 278 83 0 chr5 111089636 111089769 -41447490 + B3A SINE B2 9 152 -46 1 1432 357 280 7 114 chr5 111089775 111089825 -41447434 + MT2B LTR ERVL 125 158 -443 1 1432 741 151 17 0 chr5 111089825 111089944 -41447315 + B1_Mus2 SINE Alu 2 122 -25 1 1432 919 98 38 0 chr5 111089971 111090104 -41447155 - B2_Mm2 SINE B2 -57 138 1 1 1432 1250 48 0 0 chr5 111090162 111090309 -41446950 - B1_Mm SINE Alu 0 147 1 1 1432 1111 229 118 25 chr5 111090332 111090730 -41446529 - L1_Mur3 LINE L1 -114 5766 5332 1 1432 570 241 50 0 chr5 111090767 111090908 -41446351 - B1_Mur3 SINE Alu 0 149 2 1 1432 239 62 0 0 chr5 111090944 111090976 -41446283 - B3 SINE B2 -183 33 2 1 1432 1204 48 7 0 chr5 111091013 111091159 -41446100 - B1_Mus1 SINE Alu 0 148 2 1 1432 1996 242 63 14 chr5 111091339 111091913 -41445346 - L1_Mur3 LINE L1 -628 5252 4651 1 1432 1293 251 138 13 chr5 111092056 111092605 -41444654 - L1_Mur3 LINE L1 -1752 4128 3511 1 1432 383 148 48 36 chr5 111092861 111092945 -41444314 - RMER19B LTR ERVK -789 113 29 1 1432 270 164 146 0 chr5 111096034 111096089 -41441170 - RLTR47_MM LTR ERV1 -84 448 386 1 1432 339 290 88 107 chr5 111096108 111096313 -41440946 + ID_B1 SINE B4 4 204 -20 1 1432 524 211 97 0 chr5 111098412 111098526 -41438733 + MTEa LTR MaLR 7 131 -248 1 1432 255 271 46 11 chr5 111098549 111098655 -41438604 + MTEa LTR MaLR 180 279 -100 1 1432 1240 55 0 0 chr5 111098772 111098918 -41438341 - B1_Mm SINE Alu 0 147 2 1 1432 215 146 49 0 chr5 111099205 111099246 -41438013 + MIR SINE MIR 98 140 -122 1 1432 212 298 0 0 chr5 111100431 111100488 -41436771 + B1F2 SINE Alu 1 57 -92 1 1432 197 170 104 21 chr5 111100599 111100647 -41436612 - L4 LINE RTE -1680 349 298 1 1432 281 292 65 65 chr5 111100849 111101003 -41436256 + MER3 DNA MER1_type 52 205 -4 1 1432 1107 110 12 0 chr5 111101571 111101734 -41435525 + B2_Mm1t SINE B2 15 179 -14 1 1432 358 95 8 69 chr5 111101781 111101901 -41435358 + B2_Mm2 SINE B2 47 195 0 1 1432 345 47 0 0 chr5 111102208 111102251 -41435008 + (CTG)n Simple_repeat Simple_repeat 3 45 0 1 1432 356 151 0 0 chr5 111102740 111102793 -41434466 + B1_Mus2 SINE Alu 1 53 -94 1 1432 291 292 0 0 chr5 111102793 111102805 -41434454 + ID_B1 SINE B4 82 146 -78 1 1432 1188 55 7 0 chr5 111102842 111102988 -41434271 - B1_Mus2 SINE Alu 0 147 1 1 1432 484 294 235 0 chr5 111104637 111104858 -41432401 + B4 SINE B4 3 275 -17 1 1432 258 95 0 0 chr5 111105530 111105572 -41431687 + (CTGGGG)n Simple_repeat Simple_repeat 3 44 0 1 1432 393 75 0 0 chr5 111105659 111105712 -41431547 + (CTG)n Simple_repeat Simple_repeat 1 53 0 1 1432 257 70 0 50 chr5 111106067 111106127 -41431132 - B2_Mm2 SINE B2 -5 190 134 1 1432 824 84 0 0 chr5 111106142 111106249 -41431010 - U6 snRNA snRNA 0 107 1 1 1432 1136 74 0 0 chr5 111106246 111106394 -41430865 - B2_Mm2 SINE B2 -47 148 1 1 1432 469 294 33 33 chr5 111106398 111106549 -41430710 - B3A SINE B2 -5 193 43 1 1432 1096 88 0 7 chr5 111106622 111106770 -41430489 + B1_Mm SINE Alu 1 147 0 1 1432 825 154 34 20 chr5 111106918 111107056 -41430203 + B1_Mus1 SINE Alu 1 142 -6 1 1432 270 0 0 0 chr5 111107056 111107086 -41430173 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 1 1432 236 234 148 9 chr5 111107165 111107273 -41429986 + Tigger7 DNA MER2_type 307 429 -2062 1 1432 413 229 61 87 chr5 111107285 111107400 -41429859 + PB1D7 SINE Alu 8 119 -1 1 1432 230 267 0 0 chr5 111107430 111107475 -41429784 + Tigger7 DNA MER2_type 2403 2447 -44 1 1432 182 250 46 15 chr5 111109986 111110051 -41427208 - L3 LINE CR1 -4371 118 52 1 1432 216 163 0 0 chr5 111111180 111111223 -41426036 + A-rich Low_complexity Low_complexity 1 43 0 1 1432 370 297 18 18 chr5 111112553 111112666 -41424593 - PB1D10 SINE Alu 0 117 5 1 1432 799 188 0 0 chr5 111113324 111113462 -41423797 + B1_Mur3 SINE Alu 12 149 0 1 1432 292 212 91 0 chr5 111115144 111115210 -41422049 + RSINE1 SINE B4 77 148 -17 1 1432 668 223 124 11 chr5 111115225 111115402 -41421857 + B3A SINE B2 2 198 0 1 1432 270 265 0 39 chr5 111115521 111115623 -41421636 + L1M5 LINE L1 5351 5448 -716 1 1432 651 254 81 6 chr5 111117776 111117950 -41419309 - B3 SINE B2 -12 204 18 1 1432 318 303 18 9 chr5 111118335 111118445 -41418814 - PB1D10 SINE Alu -4 113 3 1 1432 1435 60 49 0 chr5 111118465 111118650 -41418609 - B2_Mm2 SINE B2 0 195 2 1 1432 309 109 0 0 chr5 111118805 111118851 -41418408 + (CGGA)n Simple_repeat Simple_repeat 3 48 0 1 1432 262 341 68 0 chr5 111118862 111118950 -41418309 - RSINE1 SINE B4 -71 94 1 1 1432 432 0 0 0 chr5 111121344 111121392 -41415867 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1432 185 35 69 0 chr5 111123094 111123123 -41414136 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 1432 395 198 116 54 chr5 111123123 111123235 -41414024 - PB1D9 SINE Alu -1 119 1 2 1432 483 320 78 0 chr5 111123282 111123435 -41413824 - B3A SINE B2 -30 168 4 2 1432 254 248 61 44 chr5 111124097 111124211 -41413048 + ID_B1 SINE B4 109 224 0 2 1432 260 290 72 0 chr5 111125093 111125162 -41412097 + ID4 SINE ID 1 74 -9 2 1432 301 262 25 0 chr5 111125662 111125784 -41411475 + (TA)n Simple_repeat Simple_repeat 1 125 0 2 1432 732 238 86 5 chr5 111125792 111125978 -41411281 - B3 SINE B2 -15 201 1 2 1432 225 209 0 43 chr5 111127280 111127350 -41409909 + PB1 SINE Alu 41 107 -20 2 1432 270 106 0 0 chr5 111127360 111127407 -41409852 + (TAGG)n Simple_repeat Simple_repeat 1 47 0 2 1432 490 196 0 20 chr5 111130361 111130460 -41406799 + PB1D10 SINE Alu 21 117 0 2 1432 900 133 14 0 chr5 111131641 111131784 -41405475 - B1_Mus1 SINE Alu -3 145 1 2 1432 1145 70 0 14 chr5 111132095 111132241 -41405018 + B1_Mus1 SINE Alu 3 146 -2 2 1432 271 64 0 78 chr5 111132265 111132316 -41404943 - U2 snRNA snRNA -141 47 1 2 1432 581 285 129 3 chr5 111133116 111133502 -41403757 + L1MB7 LINE L1 5470 5894 -290 2 1432 1184 172 13 56 chr5 111133566 111133800 -41403459 + URR1B DNA MER1_type 1 224 -1 2 1432 1939 151 103 3 chr5 111135571 111135929 -41401330 + ORR1B1 LTR MaLR 1 394 0 2 1432 1624 107 38 91 chr5 111136386 111136725 -41400534 + ORR1A4 LTR MaLR 1 321 -8 2 1432 565 186 84 92 chr5 111137476 111137618 -41399641 + B1_Mur2 SINE Alu 4 144 -5 2 1432 244 243 135 0 chr5 111138364 111138438 -41398821 + MLT1A1 LTR MaLR 2 85 -323 2 1432 264 331 97 87 chr5 111138506 111138701 -41398558 + MLT1A1 LTR MaLR 212 408 0 2 1432 247 310 17 0 chr5 111138995 111139053 -41398206 - ID4_ SINE ID 0 83 25 2 1432 1067 95 0 52 chr5 111139055 111139210 -41398049 + B1_Mus1 SINE Alu 2 148 0 2 1432 228 35 0 0 chr5 111139216 111139245 -41398014 + (CAAG)n Simple_repeat Simple_repeat 2 30 0 2 1432 1082 106 47 63 chr5 111139484 111139675 -41397584 + B2_Mm2 SINE B2 2 189 -6 2 1432 487 302 6 45 chr5 111139759 111139915 -41397344 - RSINE1 SINE B4 -14 151 2 2 1432 660 223 0 0 chr5 111140457 111140569 -41396690 + PB1D9 SINE Alu 1 112 -8 2 1432 537 284 53 70 chr5 111141029 111141228 -41396031 + B3A SINE B2 20 214 -2 2 1432 1557 53 16 0 chr5 111141271 111141461 -41395798 + B2_Mm2 SINE B2 2 194 -1 2 1432 1037 235 9 0 chr5 111141549 111141762 -41395497 + B3 SINE B2 1 215 -1 2 1432 729 208 113 70 chr5 111141813 111141982 -41395277 + B3A SINE B2 1 179 -16 2 1432 920 148 7 0 chr5 111141982 111142124 -41395135 + B1_Mur4 SINE Alu 2 144 -6 2 1432 475 208 113 70 chr5 111142124 111142140 -41395119 + B2_Mm2 SINE B2 180 194 -1 2 1432 269 253 31 103 chr5 111142206 111142303 -41394956 - PB1D9 SINE Alu -28 92 3 2 1432 21 0 0 0 chr5 111142320 111142341 -41394918 + AT_rich Low_complexity Low_complexity 1 21 0 2 1432 441 317 48 0 chr5 111142999 111143144 -41394115 + MER44B DNA MER2_type 203 354 -196 2 1432 505 191 85 9 chr5 111143328 111143434 -41393825 + B1_Mus1 SINE Alu 34 147 -1 2 1432 369 272 19 46 chr5 111143573 111143681 -41393578 + RSINE1 SINE B4 25 129 -36 2 1432 885 210 55 19 chr5 111143782 111144039 -41393220 + L1_Mur3 LINE L1 1859 2124 -3756 2 1432 853 182 42 118 chr5 111144082 111144272 -41392987 + L1_Mur3 LINE L1 2577 2768 -3112 2 1432 995 86 49 14 chr5 111144272 111144414 -41392845 - B1_Mus1 SINE Alu 0 148 2 2 1432 853 182 42 118 chr5 111144414 111144460 -41392799 + L1_Mur3 LINE L1 2769 2795 -3085 2 1432 669 170 7 43 chr5 111144474 111144615 -41392644 + B1_Mm SINE Alu 12 147 0 2 1432 8685 165 80 25 chr5 111144650 111145314 -41391945 + L1_Mur3 LINE L1 2781 3474 -2406 2 1432 1056 67 0 7 chr5 111145314 111145450 -41391809 + B1_Mus1 SINE Alu 1 135 -13 2 1432 8685 165 80 25 chr5 111145450 111146708 -41390551 + L1_Mur3 LINE L1 3475 4808 -1072 2 1432 1657 280 65 51 chr5 111146708 111147848 -41389411 + Lx6 LINE L1 5800 6938 -112 2 1432 29 0 0 0 chr5 111147969 111147998 -41389261 + AT_rich Low_complexity Low_complexity 1 29 0 2 1433 415 174 102 0 chr5 111149390 111149488 -41387771 + B1_Mus1 SINE Alu 2 109 -39 2 1433 1484 71 0 5 chr5 111150321 111150506 -41386753 + B2_Mm2 SINE B2 2 185 -10 2 1433 877 216 57 0 chr5 111150537 111150731 -41386528 - B3 SINE B2 -7 209 5 2 1433 668 227 42 14 chr5 111151495 111151638 -41385621 + B1_Mur2 SINE Alu 2 148 -1 2 1433 442 224 192 72 chr5 111151644 111151837 -41385422 + B3 SINE B2 1 216 0 2 1433 189 0 0 0 chr5 111154133 111154154 -41383105 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1433 1527 47 15 25 chr5 111155479 111155675 -41381584 + B2_Mm2 SINE B2 2 195 0 2 1433 279 202 24 12 chr5 111156202 111156287 -41380972 + CT-rich Low_complexity Low_complexity 3 88 0 2 1433 832 161 35 0 chr5 111156301 111156444 -41380815 - B1_Mur4 SINE Alu -1 149 2 2 1433 334 235 50 20 chr5 111156851 111156951 -41380308 - PB1D10 SINE Alu -1 116 14 2 1433 21 0 0 0 chr5 111157307 111157328 -41379931 + AT_rich Low_complexity Low_complexity 1 21 0 2 1433 226 263 28 112 chr5 111157335 111157442 -41379817 + PB1D9 SINE Alu 2 99 -21 2 1433 1175 68 0 0 chr5 111157687 111157834 -41379425 + B1_Mm SINE Alu 1 147 0 2 1433 300 364 99 0 chr5 111157877 111157998 -41379261 + RSINE1 SINE B4 28 160 -5 2 1433 484 179 0 0 chr5 111158084 111158168 -41379091 + RSINE1 SINE B4 47 130 -35 2 1433 183 100 0 0 chr5 111158341 111158371 -41378888 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2 1433 516 240 7 72 chr5 111159016 111159155 -41378104 + RSINE1 SINE B4 3 132 -33 2 1433 656 159 87 0 chr5 111159267 111159393 -41377866 + B1_Mur4 SINE Alu 1 137 -13 2 1433 230 217 101 0 chr5 111159395 111159464 -41377795 + PB1D7 SINE Alu 39 114 -6 2 1433 1486 48 16 21 chr5 111159854 111160045 -41377214 + B2_Mm2 SINE B2 1 190 -5 2 1433 230 207 123 193 chr5 111160126 111160179 -41377080 - U6 snRNA snRNA -1 106 73 2 1433 1159 76 0 0 chr5 111160179 111160324 -41376935 - B1_Mm SINE Alu 0 147 3 2 1433 230 207 123 193 chr5 111160324 111160384 -41376875 - U6 snRNA snRNA -35 72 1 2 1433 431 262 117 46 chr5 111160403 111160599 -41376660 - B3 SINE B2 -6 210 1 2 1433 266 296 56 0 chr5 111160647 111160755 -41376504 - B1_Mus1 SINE Alu -1 147 34 2 1433 888 241 19 29 chr5 111160659 111160864 -41376395 - ID_B1 SINE B4 -14 210 8 2 1433 607 216 13 33 chr5 111160880 111161033 -41376226 - B1_Mur4 SINE Alu 0 150 1 2 1433 509 198 301 24 chr5 111161037 111161203 -41376056 - B3 SINE B2 -3 213 2 2 1433 1102 160 0 40 chr5 111161359 111161561 -41375698 + B2_Mm2 SINE B2 1 194 -1 2 1433 217 227 0 22 chr5 111161561 111161606 -41375653 + polypurine Low_complexity Low_complexity 1 44 0 2 1433 1319 107 42 16 chr5 111163245 111163435 -41373824 + B2_Mm2 SINE B2 1 195 0 2 1433 615 92 0 0 chr5 111163435 111163522 -41373737 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 2 1433 1258 104 55 0 chr5 111163572 111163755 -41373504 + B2_Mm1t SINE B2 1 193 0 2 1433 1487 51 17 0 chr5 111164999 111165176 -41372083 + B2_Mm2 SINE B2 2 181 -14 2 1433 216 105 34 34 chr5 111165207 111165266 -41371993 + A-rich Low_complexity Low_complexity 2 60 0 2 1433 229 314 103 11 chr5 111165270 111165357 -41371902 - PB1D10 SINE Alu -22 95 1 2 1433 598 210 47 34 chr5 111165547 111165695 -41371564 + MTEa LTR MaLR 181 330 -49 2 1433 501 186 10 10 chr5 111165841 111165944 -41371315 - PB1D10 SINE Alu -5 112 10 2 1433 264 310 90 14 chr5 111166267 111166411 -41370848 + MER58A DNA MER1_type 54 208 -16 2 1433 281 320 19 10 chr5 111166528 111166632 -41370627 - PB1D10 SINE Alu 0 117 13 2 1433 25 0 0 0 chr5 111166672 111166697 -41370562 + AT_rich Low_complexity Low_complexity 1 25 0 2 1433 552 291 41 41 chr5 111166697 111166894 -41370365 - B3A SINE B2 0 198 2 2 1433 231 0 0 0 chr5 111166937 111166965 -41370294 + MT2_Mm LTR ERVL 466 493 0 2 1433 500 156 71 30 chr5 111167075 111167174 -41370085 + PB1D9 SINE Alu 1 103 -17 2 1433 201 259 35 0 chr5 111167178 111167236 -41370023 + GA-rich Low_complexity Low_complexity 2 61 0 2 1433 219 223 168 11 chr5 111167374 111167469 -41369790 + MIRb SINE MIR 71 180 -88 2 1433 401 356 108 24 chr5 111169556 111169844 -41367415 + L1ME4a LINE L1 5274 5585 -539 2 1433 497 262 8 8 chr5 111170021 111170144 -41367115 + B1F2 SINE Alu 1 123 -26 2 1433 617 190 13 122 chr5 111170573 111170729 -41366530 + B1_Mus1 SINE Alu 3 141 -7 2 1433 230 136 23 0 chr5 111171623 111171667 -41365592 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 1433 360 260 54 54 chr5 111171735 111171865 -41365394 + L1MC1 LINE L1 5874 6003 -330 2 1433 272 309 99 54 chr5 111171894 111172116 -41365143 + L1MC1 LINE L1 6089 6320 -13 2 1433 637 214 27 27 chr5 111172117 111172266 -41364993 + B1_Mur1 SINE Alu 1 149 0 2 1433 425 217 37 9 chr5 111172286 111172393 -41364866 + PB1D9 SINE Alu 11 120 0 2 1433 2291 158 36 6 chr5 111172741 111173138 -41364121 + MTC LTR MaLR 3 398 -23 2 1433 340 276 71 50 chr5 111173153 111173294 -41363965 + L1ME4a LINE L1 5967 6110 -14 2 1433 492 345 0 54 chr5 111173825 111173972 -41363287 + RSINE1 SINE B4 2 140 -25 2 1433 213 39 0 0 chr5 111174016 111174042 -41363217 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1433 711 123 9 0 chr5 111174288 111174394 -41362865 + B2_Mm1t SINE B2 2 108 -85 2 1433 530 125 0 43 chr5 111174444 111174561 -41362698 + GA-rich Low_complexity Low_complexity 1 112 0 2 1433 536 65 179 21 chr5 111174737 111174832 -41362427 + B1_Mus1 SINE Alu 39 148 0 2 1433 801 275 5 0 chr5 111174848 111175037 -41362222 + B3 SINE B2 27 216 0 2 1433 477 136 134 12 chr5 111175056 111175138 -41362121 + PB1D9 SINE Alu 28 119 -1 2 1433 1220 41 7 0 chr5 111175206 111175351 -41361908 + B1_Mus2 SINE Alu 2 147 0 3 1433 180 0 0 0 chr5 111175358 111175378 -41361881 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1433 359 365 36 7 chr5 111175969 111176107 -41361152 + B4A SINE B4 2 143 -149 3 1433 573 210 59 1 chr5 111176108 111176246 -41361013 + B1_Mur2 SINE Alu 1 149 0 3 1433 336 24 0 0 chr5 111176295 111176336 -41360923 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1433 509 230 125 16 chr5 111176400 111176528 -41360731 + B1_Mur1 SINE Alu 6 147 -2 3 1433 881 178 14 0 chr5 111177216 111177362 -41359897 - B1_Mur2 SINE Alu 0 149 2 3 1433 464 307 61 78 chr5 111177362 111177397 -41359862 - B4 SINE B4 -212 80 49 3 1433 1206 48 0 7 chr5 111177402 111177550 -41359709 + B1_Mm SINE Alu 1 147 0 3 1433 3929 42 2 19 chr5 111177676 111178157 -41359102 + L1_Mus1 LINE L1 6095 6567 0 3 1433 1267 120 0 50 chr5 111178164 111178365 -41358894 - B2_Mm2 SINE B2 -4 191 1 3 1433 331 280 161 30 chr5 111178381 111178679 -41358580 + L1MD LINE L1 4377 4713 -1433 3 1433 444 243 118 59 chr5 111178692 111178845 -41358414 + RSINE1 SINE B4 3 164 -1 3 1433 216 182 0 0 chr5 111178846 111178890 -41358369 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1433 334 264 116 0 chr5 111178976 111179105 -41358154 + L1M4 LINE L1 4967 5110 -1036 3 1433 1259 69 0 0 chr5 111179233 111179392 -41357867 + B2_Mm1a SINE B2 2 160 -33 3 1433 315 0 0 0 chr5 111179392 111179427 -41357832 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 1433 402 251 93 57 chr5 111179553 111179747 -41357512 + L1M4 LINE L1 5572 5772 -407 3 1433 924 72 8 0 chr5 111179843 111179968 -41357291 + B1_Mus1 SINE Alu 1 126 -22 3 1433 526 212 0 20 chr5 111179960 111180061 -41357198 + B3 SINE B2 111 209 -7 3 1433 258 143 0 0 chr5 111180066 111180115 -41357144 + (A)n Simple_repeat Simple_repeat 1 49 0 3 1433 226 280 54 59 chr5 111180750 111180936 -41356323 - L1M5 LINE L1 -416 5763 5579 3 1433 391 265 51 0 chr5 111181003 111181101 -41356158 + ID_B1 SINE B4 109 211 -13 3 1433 1423 85 11 0 chr5 111181104 111181293 -41355966 + B2_Mm1t SINE B2 2 192 -1 3 1433 460 291 16 33 chr5 111181325 111181446 -41355813 + B1F SINE Alu 10 128 -21 3 1433 528 298 143 16 chr5 111181497 111181811 -41355448 + L1MC4 LINE L1 7186 7539 -503 3 1433 306 261 160 21 chr5 111181870 111181964 -41355295 + L1MC4 LINE L1 7531 7637 -405 3 1433 25 0 0 0 chr5 111183850 111183875 -41353384 + AT_rich Low_complexity Low_complexity 1 25 0 3 1433 225 94 0 0 chr5 111184443 111184475 -41352784 + (TCC)n Simple_repeat Simple_repeat 2 33 0 3 1433 896 56 0 0 chr5 111186103 111186210 -41351049 + U6 snRNA snRNA 1 107 0 3 1433 813 38 0 9 chr5 111186210 111186317 -41350942 + B2_Mm1t SINE B2 88 193 0 3 1433 414 314 35 55 chr5 111186951 111187096 -41350163 + RSINE1 SINE B4 24 165 0 3 1433 233 276 51 110 chr5 111187262 111187380 -41349879 + B1F1 SINE Alu 1 111 -6 3 1433 402 74 0 0 chr5 111187413 111187467 -41349792 + (CATA)n Simple_repeat Simple_repeat 1 54 0 3 1433 212 163 0 0 chr5 111187633 111187676 -41349583 + T-rich Low_complexity Low_complexity 6 48 0 3 1433 754 130 16 39 chr5 111187676 111187804 -41349455 - B1_Mur4 SINE Alu 0 150 26 3 1433 959 33 57 0 chr5 111188040 111188162 -41349097 + B1_Mus1 SINE Alu 18 146 -2 3 1433 409 288 124 66 chr5 111188700 111188957 -41348302 + B4A SINE B4 4 275 -17 3 1433 384 22 0 0 chr5 111189023 111189068 -41348191 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1433 1224 35 7 0 chr5 111189079 111189224 -41348035 + B1_Mus1 SINE Alu 3 148 0 3 1433 29 0 0 0 chr5 111189224 111189253 -41348006 + AT_rich Low_complexity Low_complexity 1 29 0 3 1433 312 279 29 109 chr5 111189253 111189390 -41347869 + MT2B LTR ERVL 131 256 -345 3 1433 327 314 42 49 chr5 111189282 111189306 -41347953 + B4A SINE B4 78 220 -72 3 1433 599 217 33 0 chr5 111189306 111189426 -41347833 + B1_Mur1 SINE Alu 19 142 -7 3 1433 653 200 64 7 chr5 111189449 111189590 -41347669 + B1_Mur4 SINE Alu 2 150 0 3 1433 929 159 210 0 chr5 111189617 111189793 -41347466 + B3 SINE B2 1 213 -3 3 1433 1116 201 45 10 chr5 111190302 111190503 -41346756 + B3 SINE B2 9 216 0 3 1433 1205 68 0 0 chr5 111190511 111190657 -41346602 + B1_Mm SINE Alu 2 147 0 3 1433 332 230 32 81 chr5 111190720 111190784 -41346475 + RSINE1 SINE B4 45 111 -54 3 1433 267 54 0 0 chr5 111190784 111190821 -41346438 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1433 332 230 32 81 chr5 111190821 111190879 -41346380 + RSINE1 SINE B4 112 161 -4 3 1433 545 198 38 9 chr5 111191045 111191176 -41346083 + B3A SINE B2 1 139 -56 3 1433 851 179 7 0 chr5 111191194 111191334 -41345925 - B1_Mus1 SINE Alu -6 142 2 3 1433 338 264 46 0 chr5 111191336 111191423 -41345836 + B3 SINE B2 96 186 -30 3 1433 230 75 68 91 chr5 111191429 111191473 -41345786 + B4A SINE B4 81 123 -169 3 1433 297 68 0 0 chr5 111191479 111191523 -41345736 + (A)n Simple_repeat Simple_repeat 1 44 0 3 1433 828 236 30 15 chr5 111191632 111191830 -41345429 + B3 SINE B2 2 202 -14 3 1433 753 153 58 7 chr5 111191945 111192083 -41345176 - B1_Mus1 SINE Alu -3 145 1 3 1433 568 223 24 24 chr5 111192105 111192229 -41345030 - B1F SINE Alu 0 149 26 3 1433 216 250 0 0 chr5 111192271 111192315 -41344944 + GA-rich Low_complexity Low_complexity 2 45 0 3 1433 256 283 77 9 chr5 111192540 111192641 -41344618 - L1MA6 LINE L1 -322 5981 5882 3 1433 1633 249 148 52 chr5 111192733 111192878 -41344381 + MTE-int LTR MaLR 1 135 -1445 3 1433 1283 34 0 0 chr5 111192878 111193025 -41344234 - B1_Mm SINE Alu 0 147 1 3 1433 1633 249 148 52 chr5 111193025 111193459 -41343800 + MTE-int LTR MaLR 136 636 -944 3 1433 271 254 211 89 chr5 111193470 111193660 -41343599 + B3 SINE B2 2 214 -2 3 1433 924 228 91 83 chr5 111193708 111194160 -41343099 + RMER4A LTR ERVK 1 466 0 3 1433 806 160 0 0 chr5 111194162 111194287 -41342972 - B1_Mus1 SINE Alu -13 135 11 3 1433 378 319 49 4 chr5 111194306 111194438 -41342821 + B1F2 SINE Alu 10 145 -4 3 1433 898 244 188 51 chr5 111194478 111194814 -41342445 + MTE-int LTR MaLR 825 1206 -374 3 1433 1345 59 65 0 chr5 111194816 111194985 -41342274 + B2_Mm2 SINE B2 2 181 -14 3 1433 452 67 352 0 chr5 111195030 111195123 -41342136 + B2_Mm2 SINE B2 46 176 -19 3 1433 1238 275 46 15 chr5 111195124 111195275 -41341984 + MTE-int LTR MaLR 1195 1349 -231 3 1433 279 0 0 0 chr5 111195275 111195306 -41341953 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3 1433 1168 82 0 0 chr5 111195306 111195452 -41341807 - B1_Mus1 SINE Alu -2 146 1 3 1433 1238 275 46 15 chr5 111195452 111195628 -41341631 + MTE-int LTR MaLR 1350 1532 -48 3 1433 301 355 30 97 chr5 111195632 111195766 -41341493 + ORR1D1 LTR MaLR 14 138 -236 3 1433 963 261 93 28 chr5 111195884 111196271 -41340988 - L1MA6 LINE L1 -475 5825 5414 3 1433 425 232 3 12 chr5 111196318 111196410 -41340849 - PB1D9 SINE Alu -5 115 23 3 1433 413 257 26 197 chr5 111196924 111197037 -41340222 + ID SINE ID 7 80 -144 3 1433 315 267 0 134 chr5 111197037 111197171 -41340088 + PB1D10 SINE Alu 1 116 -1 3 1433 1298 176 0 14 chr5 111197236 111197455 -41339804 + B3 SINE B2 1 216 0 3 1433 390 272 112 86 chr5 111197460 111197657 -41339602 + B3 SINE B2 2 203 -13 3 1433 213 39 0 0 chr5 111197657 111197683 -41339576 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1433 534 174 125 27 chr5 111198228 111198340 -41338919 + B1_Mur2 SINE Alu 12 134 -15 3 1433 26 0 0 0 chr5 111198358 111198384 -41338875 + AT_rich Low_complexity Low_complexity 1 26 0 3 1433 343 261 54 0 chr5 111198398 111198509 -41338750 + PB1 SINE Alu 2 118 -9 3 1433 413 285 33 40 chr5 111198527 111198677 -41338582 + B1F SINE Alu 1 149 0 3 1433 333 0 0 0 chr5 111198777 111198814 -41338445 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1433 490 172 0 11 chr5 111198829 111198917 -41338342 + B1_Mur1 SINE Alu 55 141 -8 3 1433 24 32 0 0 chr5 111199362 111199393 -41337866 + GC_rich Low_complexity Low_complexity 1 31 0 3 1433 229 0 54 27 chr5 111200330 111200367 -41336892 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 3 1433 1045 72 0 35 chr5 111200367 111200502 -41336757 - B1_Mus1 SINE Alu -13 135 5 3 1433 1035 118 42 24 chr5 111200598 111200763 -41336496 + URR1A DNA MER1_type 59 226 0 3 1433 456 220 82 87 chr5 111200763 111200792 -41336467 - CYRA11_Mm Unknown Y-chromosome -443 174 147 3 1433 423 295 25 0 chr5 111200758 111200880 -41336379 + ID_B1 SINE B4 99 223 -1 3 1433 1386 89 26 0 chr5 111201013 111201203 -41336056 + B2_Mm2 SINE B2 1 195 0 3 1433 709 221 41 7 chr5 111201238 111201384 -41335875 + B3A SINE B2 48 198 0 3 1433 298 250 16 0 chr5 111201427 111201491 -41335768 + B3A SINE B2 29 93 -105 3 1433 623 324 0 27 chr5 111201556 111201740 -41335519 - B3A SINE B2 -17 181 3 3 1433 410 219 12 12 chr5 111201787 111201870 -41335389 - B3 SINE B2 -92 124 42 3 1433 1252 34 0 0 chr5 111202195 111202341 -41334918 + B1_Mm SINE Alu 2 147 0 3 1433 180 0 0 0 chr5 111202341 111202361 -41334898 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1433 1008 84 0 14 chr5 111203121 111203265 -41333994 + B1_Mus1 SINE Alu 7 148 0 3 1433 440 267 33 120 chr5 111203125 111203308 -41333951 + B4 SINE B4 95 261 -31 3 1433 419 248 48 57 chr5 111204754 111204878 -41332381 - B1F1 SINE Alu -8 141 19 3 1433 258 291 68 38 chr5 111204899 111205022 -41332237 - B1F SINE Alu -2 147 1 3 1433 1009 102 160 12 chr5 111205717 111205886 -41331373 - B2_Mm2 SINE B2 0 195 2 3 1433 534 88 51 4 chr5 111205980 111206073 -41331186 - PB1D9 SINE Alu -28 92 16 3 1433 234 0 0 0 chr5 111206073 111206099 -41331160 + (CCA)n Simple_repeat Simple_repeat 2 27 0 3 1433 360 77 0 0 chr5 111206109 111206161 -41331098 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1433 586 246 16 0 chr5 111206161 111206283 -41330976 - B3A SINE B2 -73 125 2 4 1433 294 29 0 0 chr5 111206292 111206327 -41330932 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1433 336 277 49 10 chr5 111207419 111207521 -41329738 - PB1D7 SINE Alu -12 108 3 4 1433 892 227 26 0 chr5 111207672 111207866 -41329393 + B3 SINE B2 3 201 -15 4 1433 2038 94 85 38 chr5 111207922 111208264 -41328995 + Lx LINE L1 6285 6642 -12 4 1433 210 57 0 79 chr5 111208578 111208616 -41328643 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1433 180 0 0 0 chr5 111208960 111208980 -41328279 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1433 352 253 87 11 chr5 111210064 111210156 -41327103 - PB1D9 SINE Alu -21 99 1 4 1433 426 227 4 0 chr5 111210156 111210237 -41327022 - PB1D7 SINE Alu -65 84 1 4 1433 344 284 0 33 chr5 111210158 111210249 -41327010 - ID_B1 SINE B4 -67 157 70 4 1433 237 255 75 47 chr5 111210604 111210711 -41326548 - L2a LINE L2 -297 3129 3020 4 1433 1639 232 90 98 chr5 111211171 111211683 -41325576 + RLTR18B LTR ERVK 1 508 -4 4 1433 305 295 48 0 chr5 111211893 111211998 -41325261 + PB1D10 SINE Alu 3 112 -5 4 1433 396 312 42 7 chr5 111212017 111212159 -41325100 + B3A SINE B2 44 190 -8 4 1433 301 247 37 12 chr5 111212319 111212401 -41324858 + PB1D10 SINE Alu 3 86 -31 4 1433 824 147 19 68 chr5 111212422 111212583 -41324676 + B2_Mm2 SINE B2 31 183 -12 4 1433 219 350 65 37 chr5 111212861 111212968 -41324291 + PB1D7 SINE Alu 1 110 -10 4 1433 257 293 45 68 chr5 111213097 111213185 -41324074 + PB1 SINE Alu 1 86 -41 4 1433 207 0 0 0 chr5 111213890 111213913 -41323346 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1433 236 255 68 30 chr5 111218790 111218871 -41318388 - B1F SINE Alu -21 96 3 4 1433 219 238 0 0 chr5 111219656 111219698 -41317561 - MIR SINE MIR -142 120 79 4 1433 537 115 19 37 chr5 111220396 111220504 -41316755 - L1Md_F2 LINE L1 0 6582 6477 4 1433 659 241 88 31 chr5 111225959 111226152 -41311107 + B3 SINE B2 8 211 -5 4 1433 655 171 40 16 chr5 111226187 111226312 -41310947 - B1_Mus1 SINE Alu -19 129 2 4 1433 1185 48 7 14 chr5 111226341 111226489 -41310770 + B1_Mus1 SINE Alu 2 148 0 4 1433 243 88 0 0 chr5 111228757 111228791 -41308468 + (CGTG)n Simple_repeat Simple_repeat 4 37 0 4 1433 261 0 0 0 chr5 111229929 111229958 -41307301 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 4 1433 762 224 27 54 chr5 111232202 111232424 -41304835 + B3 SINE B2 1 216 0 4 1433 523 258 12 68 chr5 111232424 111232586 -41304673 + RSINE1 SINE B4 13 165 0 4 1433 542 204 26 66 chr5 111232617 111232769 -41304490 + B1_Mur4 SINE Alu 5 150 0 4 1433 1216 49 0 0 chr5 111232772 111232916 -41304343 + B1_Mus2 SINE Alu 1 144 -3 4 1433 642 26 0 0 chr5 111232917 111232993 -41304266 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 4 1433 289 219 15 59 chr5 111233003 111233071 -41304188 + B4A SINE B4 81 145 -147 4 1433 303 254 14 14 chr5 111233016 111233088 -41304171 + PB1D10 SINE Alu 6 77 -40 4 1433 243 191 105 76 chr5 111233105 111233214 -41304045 + PB1D7 SINE Alu 1 111 -9 4 1433 242 192 266 13 chr5 111233142 111233221 -41304038 + ID_B1 SINE B4 124 222 -2 4 1433 518 202 51 34 chr5 111233246 111233364 -41303895 + B1_Mur1 SINE Alu 5 124 -25 4 1433 675 168 122 0 chr5 111233986 111234117 -41303142 - B1_Mur2 SINE Alu -1 148 2 4 1433 459 211 352 32 chr5 111234121 111234371 -41302888 + ORR1E LTR MaLR 2 331 -28 4 1433 280 250 39 13 chr5 111234367 111234444 -41302815 + B1F SINE Alu 69 147 -2 4 1433 868 163 0 26 chr5 111234778 111234929 -41302330 + B1_Mur3 SINE Alu 3 149 0 4 1433 534 206 9 9 chr5 111234929 111235026 -41302233 + B3 SINE B2 31 128 -88 4 1433 458 289 8 8 chr5 111235061 111235183 -41302076 + B3A SINE B2 67 188 -10 4 1433 472 233 300 13 chr5 111235186 111235430 -41301829 + Lx5 LINE L1 6728 7057 -1 4 1433 585 157 118 47 chr5 111235450 111235577 -41301682 + B1_Mus2 SINE Alu 11 146 -1 4 1433 226 272 94 42 chr5 111235674 111235770 -41301489 + L1M5 LINE L1 5553 5653 -471 4 1433 942 72 218 19 chr5 111236296 111236452 -41300807 - B2_Mm2 SINE B2 -7 188 2 4 1433 36 40 0 0 chr5 111238744 111238794 -41298465 + GC_rich Low_complexity Low_complexity 1 50 0 4 1433 550 258 78 58 chr5 111239406 111239612 -41297647 - B3 SINE B2 -5 211 2 4 1433 248 53 0 26 chr5 111239634 111239673 -41297586 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 4 1433 730 155 0 8 chr5 111239679 111239796 -41297463 - B1_Mus2 SINE Alu -10 137 22 4 1433 601 217 20 74 chr5 111239795 111239944 -41297315 - B1_Mur1 SINE Alu -4 145 5 4 1433 409 330 59 0 chr5 111240007 111240125 -41297134 - RSINE1 SINE B4 -34 131 7 4 1433 377 247 172 0 chr5 111240183 111240276 -41296983 - ID_B1 SINE B4 -9 215 107 4 1433 282 269 206 28 chr5 111240276 111240290 -41296969 - B1F SINE Alu -9 140 15 4 1433 405 0 0 0 chr5 111240432 111240477 -41296782 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1433 1605 149 14 167 chr5 111240739 111241223 -41296036 - RMER17C LTR ERVK 0 410 1 4 1433 360 0 0 0 chr5 111242494 111242534 -41294725 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1433 2499 89 9 0 chr5 111243470 111243794 -41293465 + ORR1A2 LTR MaLR 1 327 0 4 1433 3391 176 191 11 chr5 111243794 111244140 -41293119 + ORR1A2-int LTR MaLR 1 351 -1612 4 1433 1247 54 0 0 chr5 111244140 111244287 -41292972 + B1_Mm SINE Alu 1 147 0 4 1433 3391 176 191 11 chr5 111244287 111244814 -41292445 + ORR1A2-int LTR MaLR 352 1030 -933 4 1433 541 28 0 53 chr5 111244811 111244887 -41292372 + B1_Mur4 SINE Alu 79 150 0 4 1433 654 37 0 0 chr5 111244896 111244977 -41292282 + (GAAAA)n Simple_repeat Simple_repeat 4 84 0 4 1433 420 59 0 139 chr5 111244977 111245056 -41292203 + ORR1A1-int LTR MaLR 843 910 -882 4 1433 889 71 143 0 chr5 111245056 111245182 -41292077 - B1_Mus2 SINE Alu -1 146 3 4 1433 812 77 8 0 chr5 111245183 111245300 -41291959 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 4 1433 604 175 57 23 chr5 111245309 111245484 -41291775 - RMER17C LTR ERVK -132 278 98 4 1433 1111 88 7 0 chr5 111245487 111245634 -41291625 + B1_Mus1 SINE Alu 1 148 0 4 1433 1002 188 220 40 chr5 111245668 111245972 -41291287 - ORR1C1 LTR MaLR -15 363 5 4 1433 227 229 42 0 chr5 111246029 111246077 -41291182 + MTC LTR MaLR 372 421 0 4 1433 353 78 0 18 chr5 111246077 111246118 -41291141 - ORR1A2 LTR MaLR -147 179 143 4 1433 1311 88 0 0 chr5 111246111 111246281 -41290978 - B2_Mm1t SINE B2 -23 170 1 4 1433 1077 121 0 0 chr5 111246282 111246439 -41290820 - ORR1A2 LTR MaLR -170 157 1 4 1433 472 310 12 0 chr5 111246553 111246724 -41290535 + (TTAGGG)n Simple_repeat Simple_repeat 4 176 0 4 1433 4127 133 72 9 chr5 111246779 111247447 -41289812 + RMER19A LTR ERVK 38 737 0 4 1433 881 146 44 0 chr5 111247583 111247720 -41289539 - B1_Mus2 SINE Alu -3 144 2 4 1433 2741 111 10 8 chr5 111247798 111248189 -41289070 - ORR1B1 LTR MaLR 0 394 3 4 1433 186 233 0 0 chr5 111248255 111248315 -41288944 + (TTAGGG)n Simple_repeat Simple_repeat 3 62 0 4 1433 484 296 6 6 chr5 111248402 111248582 -41288677 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 4 1433 192 158 0 0 chr5 111248695 111248733 -41288526 + (TTAGGG)n Simple_repeat Simple_repeat 5 42 0 4 1433 1969 143 9 135 chr5 111248733 111248800 -41288459 - ORR1B1 LTR MaLR 0 394 353 4 1433 1173 56 7 0 chr5 111248800 111248944 -41288315 - B1_Mus2 SINE Alu -1 146 2 4 1433 1969 143 9 135 chr5 111248944 111249297 -41287962 - ORR1B1 LTR MaLR -42 352 27 4 1433 380 320 11 0 chr5 111249297 111249475 -41287784 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 4 1433 228 342 26 0 chr5 111249520 111249634 -41287625 + (TTAGGG)n Simple_repeat Simple_repeat 4 120 0 4 1433 309 26 0 0 chr5 111249736 111249774 -41287485 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 4 1433 251 189 109 109 chr5 111249788 111249889 -41287370 - B2_Mm2 SINE B2 -91 102 2 4 1433 1209 67 92 0 chr5 111249889 111250053 -41287206 - B2_Mm1a SINE B2 -14 179 1 4 1433 366 321 32 48 chr5 111250076 111250123 -41287136 + ID_B1 SINE B4 46 134 -158 4 1433 575 178 0 4 chr5 111250123 111250225 -41287034 + B1_Mur2 SINE Alu 1 100 -49 4 1433 366 321 32 48 chr5 111250225 111250276 -41286983 + ID_B1 SINE B4 135 236 -56 4 1433 1232 48 0 13 chr5 111250337 111250486 -41286773 - B1_Mus2 SINE Alu 0 147 1 4 1433 1142 95 6 0 chr5 111250513 111250692 -41286567 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1433 267 31 0 0 chr5 111250719 111250751 -41286508 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 4 1433 489 216 12 168 chr5 111250753 111250920 -41286339 - B1_Mus2 SINE Alu -6 141 1 4 1433 602 296 34 23 chr5 111251309 111251485 -41285774 + MTD LTR MaLR 24 201 -218 4 1433 1208 34 7 14 chr5 111251497 111251645 -41285614 + B1_Mus2 SINE Alu 1 147 0 4 1433 754 204 72 22 chr5 111251666 111251846 -41285413 + B3A SINE B2 1 189 -9 4 1433 420 225 73 86 chr5 111251867 111252018 -41285241 + MTC-int LTR MaLR 624 772 -486 4 1433 267 103 0 0 chr5 111252022 111252061 -41285198 + (CAT)n Simple_repeat Simple_repeat 3 41 0 4 1433 655 257 77 114 chr5 111252357 111252637 -41284622 + MTC-int LTR MaLR 796 1066 -192 4 1433 674 82 10 0 chr5 111252637 111252735 -41284524 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 4 1433 915 179 0 0 chr5 111252735 111252875 -41284384 - B1_Mur3 SINE Alu -7 142 3 4 1433 655 257 77 114 chr5 111252875 111252892 -41284367 + MTC-int LTR MaLR 1067 1082 -176 4 1433 1285 34 0 0 chr5 111252902 111253049 -41284210 - B1_Mus1 SINE Alu 0 148 2 4 1433 258 138 0 0 chr5 111253777 111253835 -41283424 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1433 231 146 0 0 chr5 111253834 111253875 -41283384 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1433 298 147 29 0 chr5 111253949 111254017 -41283242 + (TG)n Simple_repeat Simple_repeat 1 70 0 5 1433 250 314 47 74 chr5 111254109 111254257 -41283002 + RMER15 LTR ERVL 425 568 -7 5 1433 302 369 13 6 chr5 111254416 111254574 -41282685 + RMER15-int LTR ERVL 257 415 -4584 5 1433 1254 237 115 109 chr5 111254713 111254851 -41282408 - RMER15-int LTR ERVL -3350 1649 1550 5 1433 1701 36 0 0 chr5 111254851 111255044 -41282215 + B2_Mm1t SINE B2 1 193 0 5 1433 1254 237 115 109 chr5 111255044 111255436 -41281823 - RMER15-int LTR ERVL -3450 1549 1116 5 1433 1249 87 35 6 chr5 111255445 111255618 -41281641 + B2_Mm1t SINE B2 2 179 -14 5 1433 260 86 0 0 chr5 111255664 111255699 -41281560 + B2_Mm2 SINE B2 47 81 -114 5 1433 1461 245 144 32 chr5 111256003 111256476 -41280783 + RMER5 LTR ERV1 1 526 -8 5 1433 228 185 0 0 chr5 111256538 111256592 -41280667 + T-rich Low_complexity Low_complexity 1 54 0 5 1433 236 132 151 0 chr5 111256864 111256917 -41280342 - RMER15 LTR ERVL -92 483 423 5 1433 1139 196 304 15 chr5 111256989 111257387 -41279872 - RLTR11A2 LTR ERVK -7 520 8 5 1433 1247 54 0 0 chr5 111257829 111257976 -41279283 - B1_Mm SINE Alu 0 147 1 5 1433 397 342 112 15 chr5 111258322 111258518 -41278741 + MER20 DNA MER1_type 3 217 -2 5 1433 1153 63 28 0 chr5 111258557 111258700 -41278559 + B1_Mm SINE Alu 1 147 0 5 1433 288 0 0 0 chr5 111258700 111258732 -41278527 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1433 260 146 42 0 chr5 111258800 111258848 -41278411 + B4A SINE B4 2 51 -241 5 1433 713 110 0 0 chr5 111258871 111258971 -41278288 + B1_Mus1 SINE Alu 36 135 -13 5 1433 377 290 37 0 chr5 111259114 111259221 -41278038 + PB1D9 SINE Alu 9 119 -1 5 1433 213 65 0 0 chr5 111259230 111259261 -41277998 + (CCA)n Simple_repeat Simple_repeat 1 31 0 5 1433 1198 68 0 26 chr5 111259393 111259545 -41277714 + B1_Mus1 SINE Alu 1 148 0 5 1433 443 172 222 0 chr5 111259648 111259747 -41277512 + B3 SINE B2 95 215 -1 5 1433 510 235 108 22 chr5 111259781 111259920 -41277339 + RSINE1 SINE B4 12 162 -3 5 1433 265 286 39 0 chr5 111260161 111260238 -41277021 - ID4_ SINE ID -2 81 2 5 1433 307 178 0 61 chr5 111260246 111260312 -41276947 - PB1D10 SINE Alu -8 109 48 5 1433 1125 45 0 7 chr5 111260955 111261090 -41276169 + B1_Mus1 SINE Alu 1 134 -14 5 1433 1002 196 141 187 chr5 111261162 111261271 -41275988 + MTD LTR MaLR 1 90 -329 5 1433 791 169 192 0 chr5 111261271 111261443 -41275816 - B3 SINE B2 -11 205 1 5 1433 1002 196 141 187 chr5 111261443 111261703 -41275556 + MTD LTR MaLR 91 356 -63 5 1433 1127 83 0 0 chr5 111261703 111261847 -41275412 + B1_Mus2 SINE Alu 1 144 -3 5 1433 255 31 0 0 chr5 111261847 111261879 -41275380 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5 1433 1002 196 141 187 chr5 111261879 111261946 -41275313 + MTD LTR MaLR 357 418 -1 5 1433 308 260 143 30 chr5 111262030 111262044 -41275215 + B1F SINE Alu 1 56 -93 5 1433 425 237 82 10 chr5 111262044 111262142 -41275117 + ID_B1 SINE B4 100 204 -20 5 1433 308 260 143 30 chr5 111262142 111262162 -41275097 + B1F SINE Alu 57 149 0 5 1433 1006 56 0 0 chr5 111262226 111262351 -41274908 - B1_Mus2 SINE Alu -22 125 1 5 1433 825 183 28 0 chr5 111262413 111262555 -41274704 + B1_Mur4 SINE Alu 5 150 0 5 1433 429 20 0 0 chr5 111262629 111262679 -41274580 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1433 182 327 65 28 chr5 111263045 111263152 -41274107 + MIRb SINE MIR 9 119 -149 5 1433 352 30 0 29 chr5 111263264 111263327 -41273932 - B1_Mm SINE Alu 0 147 89 5 1433 1229 99 66 0 chr5 111263401 111263582 -41273677 - B2_Mm2 SINE B2 -2 193 1 5 1433 378 147 0 0 chr5 111264163 111264231 -41273028 + (T)n Simple_repeat Simple_repeat 1 68 0 5 1433 800 128 17 0 chr5 111264231 111264348 -41272911 - PB1D9 SINE Alu 0 120 2 5 1433 365 187 72 83 chr5 111264437 111264570 -41272689 + PB1D7 SINE Alu 3 124 -25 5 1433 293 240 67 0 chr5 111264656 111264731 -41272528 + ID4_ SINE ID 4 83 0 5 1433 22 0 0 0 chr5 111264880 111264902 -41272357 + AT_rich Low_complexity Low_complexity 1 22 0 5 1433 1357 97 0 25 chr5 111265781 111265981 -41271278 - B2_Mm2 SINE B2 0 195 1 5 1433 1385 83 5 5 chr5 111265988 111266181 -41271078 - B2_Mm1t SINE B2 0 193 1 5 1433 226 50 0 0 chr5 111266191 111266231 -41271028 - Lx2 LINE L1 0 6997 6958 5 1433 883 49 112 16 chr5 111266278 111266403 -41270856 - B1_Mm SINE Alu -1 146 10 5 1433 437 134 37 0 chr5 111266498 111266580 -41270679 + GA-rich Low_complexity Low_complexity 1 85 0 5 1433 269 318 89 22 chr5 111266655 111266745 -41270514 - PB1D7 SINE Alu -18 102 7 5 1433 1188 68 0 7 chr5 111266784 111266933 -41270326 - B1_Mus1 SINE Alu 0 148 1 5 1433 207 69 0 0 chr5 111266933 111266962 -41270297 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1433 1445 75 37 0 chr5 111267276 111267463 -41269796 + B2_Mm2 SINE B2 1 194 -1 5 1433 390 333 0 0 chr5 111267537 111267654 -41269605 - PB1D10 SINE Alu 0 117 1 5 1433 286 288 86 9 chr5 111267678 111267783 -41269476 - PB1D9 SINE Alu -7 113 1 5 1433 250 273 38 38 chr5 111267890 111267970 -41269289 + B1_Mm SINE Alu 17 96 -51 5 1433 207 0 0 0 chr5 111267981 111268004 -41269255 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1433 271 218 154 44 chr5 111268342 111268433 -41268826 - PB1 SINE Alu -4 123 23 5 1433 480 254 83 26 chr5 111269674 111269831 -41267428 - B3A SINE B2 -2 196 48 5 1433 404 298 35 45 chr5 111269962 111270162 -41267097 - B3A SINE B2 0 198 1 5 1433 595 262 0 8 chr5 111270852 111270975 -41266284 - ID_B1 SINE B4 -1 223 102 5 1433 348 235 179 17 chr5 111271000 111271117 -41266142 - B1F SINE Alu -1 148 13 5 1433 1371 176 231 8 chr5 111271186 111271398 -41265861 - MT2A LTR ERVL 0 533 259 5 1433 1198 126 11 6 chr5 111271398 111271574 -41265685 + B2_Mm2 SINE B2 1 177 -18 5 1433 1371 176 231 8 chr5 111271574 111271721 -41265538 - MT2A LTR ERVL -275 258 94 5 1433 430 204 108 0 chr5 111271748 111271836 -41265423 + B1_Mus2 SINE Alu 41 138 -9 5 1433 216 0 0 0 chr5 111271836 111271860 -41265399 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1433 1071 276 133 49 chr5 111271877 111272304 -41264955 - MT2A LTR ERVL -68 465 3 5 1433 616 187 0 147 chr5 111272389 111272552 -41264707 - RLTR20D LTR ERVK 0 568 430 5 1433 1594 122 11 4 chr5 111272552 111272815 -41264444 - L1_Mus3 LINE L1 0 6638 6374 5 1433 485 111 2 0 chr5 111272834 111272908 -41264351 - B1_Mus2 SINE Alu -51 76 2 5 1433 1894 68 0 0 chr5 111272908 111273157 -41264102 - L1_Mus3 LINE L1 -250 6388 6140 5 1433 431 258 39 24 chr5 111273272 111273399 -41263860 - B1F1 SINE Alu -3 146 18 5 1433 399 263 102 0 chr5 111273417 111273535 -41263724 - L1M4 LINE L1 -2415 3731 3602 5 1433 649 221 52 0 chr5 111273603 111273739 -41263520 - ID_B1 SINE B4 0 224 82 5 1433 821 178 20 0 chr5 111273779 111273925 -41263334 - B1_Mur4 SINE Alu 0 150 2 5 1433 421 265 6 137 chr5 111273925 111273979 -41263280 - MT2B LTR ERVL -446 155 125 5 1433 256 194 62 31 chr5 111274186 111274250 -41263009 - RMER15 LTR ERVL 0 575 510 5 1433 2189 116 3 42 chr5 111274250 111274419 -41262840 + ORR1A2 LTR MaLR 1 168 -159 5 1433 1159 69 14 0 chr5 111274419 111274563 -41262696 + B1_Mm SINE Alu 2 147 0 5 1433 2189 116 3 42 chr5 111274563 111274725 -41262534 + ORR1A2 LTR MaLR 169 319 -8 5 1433 1673 191 139 64 chr5 111274718 111275187 -41262072 - RMER15 LTR ERVL -50 525 22 5 1433 290 250 0 53 chr5 111275250 111275326 -41261933 - RMER15 LTR ERVL -503 72 1 5 1433 241 320 122 17 chr5 111275336 111275508 -41261751 - L2 LINE L2 -395 3024 2835 5 1433 557 162 155 43 chr5 111275569 111275685 -41261574 - B1_Mur4 SINE Alu -21 129 1 5 1433 463 200 192 0 chr5 111275764 111275884 -41261375 + B1F1 SINE Alu 1 143 -6 5 1433 779 255 8 130 chr5 111275894 111276051 -41261208 + ID_B1 SINE B4 2 151 -73 5 1433 2134 58 88 39 chr5 111276051 111276358 -41260901 + L1_Mus1 LINE L1 6245 6566 -1 5 1433 779 255 8 130 chr5 111276358 111276439 -41260820 + ID_B1 SINE B4 152 211 -13 5 1433 1224 61 0 0 chr5 111276607 111276754 -41260505 - B1_Mus1 SINE Alu 0 148 2 5 1433 186 43 0 0 chr5 111276828 111276851 -41260408 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 5 1433 1461 89 0 0 chr5 111276871 111277062 -41260197 - B2_Mm2 SINE B2 -4 191 1 5 1433 1494 54 38 0 chr5 111277064 111277248 -41260011 - B2_Mm2 SINE B2 -3 192 2 5 1433 469 165 172 7 chr5 111277970 111278091 -41259168 - B1_Mur2 SINE Alu 0 149 16 5 1433 260 222 42 0 chr5 111278106 111278178 -41259081 - B4A SINE B4 -2 290 216 5 1433 482 350 12 12 chr5 111278317 111278479 -41258780 - RSINE1 SINE B4 -2 163 2 5 1433 496 106 12 12 chr5 111278942 111279028 -41258231 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 1433 596 302 96 19 chr5 111279043 111279273 -41257986 - B4A SINE B4 0 292 41 5 1433 1142 109 53 16 chr5 111279273 111279460 -41257799 - B2_Mm2 SINE B2 0 195 2 5 1433 596 302 96 19 chr5 111279460 111279499 -41257760 - B4A SINE B4 -252 40 2 5 1433 441 188 0 0 chr5 111279524 111279604 -41257655 - PB1D9 SINE Alu -7 113 34 5 1433 384 278 17 34 chr5 111279617 111279736 -41257523 - ID_B1 SINE B4 -21 203 87 5 1433 411 244 130 0 chr5 111279824 111279955 -41257304 - RSINE1 SINE B4 0 165 18 5 179 1346 35 6 0 chr5 111280011 111280185 -41257074 - MTB LTR MaLR 0 400 226 5 1434 293 327 71 18 chr5 111280196 111280308 -41256951 - RSINE1 SINE B4 0 165 48 5 1434 676 244 67 10 chr5 111280317 111280675 -41256584 - MTC LTR MaLR -14 407 6 5 1434 194 0 39 0 chr5 111280675 111280701 -41256558 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1434 280 265 84 0 chr5 111280717 111280800 -41256459 - MTC-int LTR MaLR 0 1258 1169 5 1434 829 174 7 7 chr5 111280813 111280958 -41256301 + B1_Mur2 SINE Alu 3 147 -2 6 1434 1509 244 148 163 chr5 111281005 111281078 -41256181 - MTC-int LTR MaLR -86 1172 1096 5 1434 823 244 50 5 chr5 111281078 111281276 -41255983 + B3 SINE B2 5 211 -5 6 1434 1509 244 148 163 chr5 111281276 111282136 -41255123 - MTC-int LTR MaLR -163 1095 257 5 1434 1106 134 11 11 chr5 111282136 111282325 -41254934 - B2_Mm2 SINE B2 -5 190 2 6 1434 1509 244 148 163 chr5 111282325 111282535 -41254724 - MTC-int LTR MaLR -1002 256 47 5 1434 508 225 136 21 chr5 111282568 111282885 -41254374 - MTD LTR MaLR -14 405 1 6 1434 388 323 29 40 chr5 111282957 111283131 -41254128 + ID_B1 SINE B4 45 216 -8 6 1434 341 185 0 42 chr5 111283216 111283302 -41253957 + L1MB8 LINE L1 5803 5885 -293 6 1434 828 68 129 0 chr5 111283825 111283957 -41253302 - B1_Mur4 SINE Alu -1 149 1 6 1434 255 31 0 0 chr5 111284331 111284363 -41252896 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1434 441 0 0 0 chr5 111284363 111284411 -41252848 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1434 258 238 161 12 chr5 111284571 111284652 -41252607 - B4A SINE B4 -199 93 1 6 1434 227 268 196 0 chr5 111285530 111285627 -41251632 - PB1D10 SINE Alu 0 117 2 6 1434 1257 110 33 0 chr5 111286479 111286661 -41250598 - B2_Mm1t SINE B2 -5 188 1 6 1434 417 283 203 23 chr5 111286821 111286998 -41250261 + B3 SINE B2 2 210 -6 6 1434 23 43 0 21 chr5 111287001 111287026 -41250233 + AT_rich Low_complexity Low_complexity 1 25 0 6 1434 1388 80 16 5 chr5 111287026 111287215 -41250044 + B2_Mm2 SINE B2 2 192 -3 6 1434 23 43 0 21 chr5 111287215 111287237 -41250022 + AT_rich Low_complexity Low_complexity 1 22 0 6 1434 283 258 0 63 chr5 111288249 111288344 -41248915 + CT-rich Low_complexity Low_complexity 3 91 0 6 1434 275 267 11 32 chr5 111288346 111288439 -41248820 - PB1 SINE Alu -2 125 35 6 1434 255 206 29 14 chr5 111288459 111288528 -41248731 - PB1 SINE Alu -13 114 45 6 1434 636 284 20 0 chr5 111288580 111288728 -41248531 + RSINE1 SINE B4 5 155 -10 6 1434 186 133 0 0 chr5 111288730 111288760 -41248499 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 6 1434 571 217 0 0 chr5 111289352 111289472 -41247787 - ID_B1 SINE B4 0 224 105 6 1434 701 115 221 0 chr5 111290013 111290135 -41247124 + B1_Mur4 SINE Alu 1 149 -1 6 1434 229 398 0 0 chr5 111290173 111290256 -41247003 - MIR SINE MIR -144 118 36 6 1434 1044 66 0 0 chr5 111290375 111290512 -41246747 + B1_Mus1 SINE Alu 6 142 -6 6 1434 1228 92 40 6 chr5 111290512 111290686 -41246573 - B2_Mm2 SINE B2 -14 181 2 6 1434 26 0 0 0 chr5 111290695 111290721 -41246538 + AT_rich Low_complexity Low_complexity 1 26 0 6 1434 784 147 81 0 chr5 111290722 111290858 -41246401 - B1_Mus1 SINE Alu -1 147 1 6 1434 322 300 79 13 chr5 111290986 111291138 -41246121 - B3A SINE B2 -3 195 34 6 1434 255 257 78 109 chr5 111291156 111291449 -41245810 - RMER10A LTR ERVL -37 405 122 6 1434 1397 99 10 5 chr5 111291593 111291786 -41245473 + B2_Mm2 SINE B2 2 195 0 6 1434 716 174 34 27 chr5 111291819 111291967 -41245292 - B1_Mur4 SINE Alu 0 150 2 6 1434 216 191 64 0 chr5 111292024 111292071 -41245188 - B1_Mus2 SINE Alu -97 50 1 6 1434 292 194 14 20 chr5 111292761 111292908 -41244351 + (CA)n Simple_repeat Simple_repeat 2 147 0 6 1434 386 202 38 23 chr5 111292933 111293040 -41244219 + (CA)n Simple_repeat Simple_repeat 1 109 0 6 1434 585 42 0 0 chr5 111293040 111293112 -41244147 + (TC)n Simple_repeat Simple_repeat 1 72 0 6 1434 386 202 38 23 chr5 111293112 111293136 -41244123 + (CA)n Simple_repeat Simple_repeat 2 26 0 6 1434 1146 129 6 11 chr5 111293292 111293472 -41243787 - B2_Mm2 SINE B2 -14 181 3 6 1434 526 185 6 11 chr5 111293808 111293988 -41243271 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1434 218 32 0 31 chr5 111294037 111294052 -41243207 + (GA)n Simple_repeat Simple_repeat 1 15 0 6 1434 234 0 0 0 chr5 111294052 111294078 -41243181 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1434 218 32 0 31 chr5 111294078 111294094 -41243165 + (GA)n Simple_repeat Simple_repeat 2 17 0 6 1434 233 284 91 0 chr5 111294097 111294185 -41243074 - RSINE1 SINE B4 -43 122 27 6 1434 1218 48 0 0 chr5 111295593 111295740 -41241519 + B1_Mus1 SINE Alu 2 148 0 6 1434 693 110 0 0 chr5 111295743 111295861 -41241398 + (GAAA)n Simple_repeat Simple_repeat 2 119 0 6 1434 286 316 37 20 chr5 111296217 111296375 -41240884 + MIRm SINE MIR 26 189 -79 6 1434 1177 41 14 0 chr5 111298706 111298852 -41238407 - B1_Mus1 SINE Alu 0 148 1 6 1434 233 309 172 41 chr5 111299441 111299570 -41237689 + B4A SINE B4 71 281 -11 6 1434 243 355 13 0 chr5 111299945 111300021 -41237238 - B1_Mur4 SINE Alu -58 92 16 6 1434 531 223 15 44 chr5 111300049 111300185 -41237074 + B1_Mur1 SINE Alu 3 134 -15 6 1434 546 293 18 18 chr5 111300182 111300352 -41236907 - B3A SINE B2 -28 170 1 6 1434 273 29 0 0 chr5 111301690 111301724 -41235535 + (GTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1434 884 34 0 0 chr5 111301724 111301842 -41235417 - B1_Mus1 SINE Alu -1 147 30 6 1434 246 361 12 0 chr5 111302050 111302133 -41235126 - Tigger5 DNA MER2_type 0 2406 2323 6 1434 27 29 0 0 chr5 111302648 111302682 -41234577 + AT_rich Low_complexity Low_complexity 1 34 0 6 1434 1165 75 0 0 chr5 111302682 111302829 -41234430 + B1_Mus1 SINE Alu 1 147 -1 6 1434 180 0 0 0 chr5 111302945 111302965 -41234294 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 6 1434 305 268 179 31 chr5 111302992 111303146 -41234113 + B3A SINE B2 24 197 -1 6 1434 508 227 50 50 chr5 111303291 111303430 -41233829 + B1_Mur3 SINE Alu 3 141 -8 6 1434 341 196 0 101 chr5 111303450 111303655 -41233604 + CT-rich Low_complexity Low_complexity 1 184 0 6 1434 232 244 0 99 chr5 111303658 111303749 -41233510 + polypyrimidine Low_complexity Low_complexity 2 83 0 6 1434 426 85 0 0 chr5 111303758 111303817 -41233442 + (TCTCCC)n Simple_repeat Simple_repeat 3 61 0 6 1434 477 0 0 0 chr5 111303818 111303871 -41233388 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1434 311 294 0 73 chr5 111303994 111304104 -41233155 + PB1D10 SINE Alu 16 117 0 6 1434 3377 175 50 148 chr5 111304327 111305274 -41231985 + RMER1B Other Other 213 1066 0 6 1434 320 224 0 15 chr5 111305278 111305346 -41231913 + B3 SINE B2 27 93 -123 6 1434 777 115 55 41 chr5 111305349 111305494 -41231765 + B1_Mus1 SINE Alu 1 147 -1 6 1434 204 293 17 0 chr5 111306044 111306102 -41231157 + GA-rich Low_complexity Low_complexity 1 59 0 6 1434 379 208 79 0 chr5 111306375 111306476 -41230783 + B3 SINE B2 107 215 -1 6 1434 362 309 93 29 chr5 111306534 111306674 -41230585 - B3 SINE B2 -57 159 11 6 1434 2457 77 0 0 chr5 111307410 111307748 -41229511 - ORR1A1 LTR MaLR -8 338 1 6 1434 1041 43 0 7 chr5 111307911 111308053 -41229206 + B1_Mus1 SINE Alu 8 148 0 6 1434 265 29 0 0 chr5 111308189 111308224 -41229035 - B1_Mus2 SINE Alu -82 65 31 6 1434 783 198 220 0 chr5 111308240 111308417 -41228842 - B3 SINE B2 0 216 1 6 1434 28 71 0 0 chr5 111308779 111308835 -41228424 + GC_rich Low_complexity Low_complexity 1 56 0 6 1434 196 298 0 17 chr5 111309746 111309804 -41227455 + L2b LINE L2 3317 3373 -2 6 1434 489 223 23 62 chr5 111310040 111310169 -41227090 + RSINE1 SINE B4 3 126 -39 6 1434 465 19 0 0 chr5 111310187 111310241 -41227018 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1434 180 0 0 0 chr5 111310241 111310260 -41226999 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 6 1434 666 207 166 0 chr5 111310377 111310546 -41226713 - B3 SINE B2 -10 206 10 6 1434 651 23 0 0 chr5 111310757 111310844 -41226415 + B1_Mus1 SINE Alu 1 87 -61 6 1434 669 245 40 30 chr5 111310999 111311201 -41226058 + B4A SINE B4 1 204 -88 6 1434 896 146 20 40 chr5 111311202 111311352 -41225907 + B1_Mur4 SINE Alu 1 147 -3 6 1434 414 0 0 0 chr5 111311359 111311405 -41225854 + (CCA)n Simple_repeat Simple_repeat 1 46 0 6 1434 361 233 76 19 chr5 111311463 111311568 -41225691 + PB1D10 SINE Alu 5 115 -2 6 1434 1112 253 75 29 chr5 111311604 111311683 -41225576 + Lx9 LINE L1 7074 7149 -495 6 1434 1137 45 0 0 chr5 111311683 111311816 -41225443 + B1_Mus1 SINE Alu 3 135 -13 6 1434 207 0 0 0 chr5 111311818 111311841 -41225418 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1434 1112 253 75 29 chr5 111311841 111312144 -41225115 + Lx9 LINE L1 7150 7477 -167 6 1434 210 192 16 62 chr5 111312175 111312303 -41224956 + (CATA)n Simple_repeat Simple_repeat 1 122 0 6 1434 529 182 50 31 chr5 111312331 111312490 -41224769 + Lx9 LINE L1 7478 7639 -5 6 1434 1217 58 114 17 chr5 111312491 111312667 -41224592 + B2_Mm2 SINE B2 1 193 -2 6 1434 1060 64 184 6 chr5 111312782 111312940 -41224319 - B2_Mm2 SINE B2 -8 187 2 6 1434 468 265 29 0 chr5 111312987 111313089 -41224170 + PB1D7 SINE Alu 1 105 -15 6 1434 491 343 28 6 chr5 111313104 111313286 -41223973 + B3A SINE B2 2 187 -11 6 1434 1581 49 0 0 chr5 111313294 111313479 -41223780 - B2_Mm1a SINE B2 -7 186 2 6 1434 430 268 181 16 chr5 111313555 111313737 -41223522 - ID_B1 SINE B4 -12 212 1 6 1434 1138 77 0 0 chr5 111313760 111313903 -41223356 - B1_Mus1 SINE Alu -5 143 1 6 1434 500 266 115 0 chr5 111313983 111314122 -41223137 + B3 SINE B2 56 210 -6 6 1434 484 200 7 7 chr5 111314221 111314357 -41222902 + (TG)n Simple_repeat Simple_repeat 2 137 0 6 1434 24 0 0 0 chr5 111314390 111314414 -41222845 + AT_rich Low_complexity Low_complexity 1 24 0 6 1434 1554 118 129 58 chr5 111314423 111314748 -41222511 - ORR1C1 LTR MaLR 0 378 31 6 1434 559 219 73 0 chr5 111314749 111314872 -41222387 - B1_Mus2 SINE Alu -15 132 1 6 1434 551 244 8 8 chr5 111315119 111315247 -41222012 + B1_Mur1 SINE Alu 17 144 -5 6 1434 1060 62 0 27 chr5 111315256 111315406 -41221853 + B2_Mm2 SINE B2 1 146 -49 7 1434 360 0 0 0 chr5 111315406 111315446 -41221813 + (TA)n Simple_repeat Simple_repeat 1 40 0 7 1434 21 36 0 0 chr5 111315582 111315610 -41221649 + AT_rich Low_complexity Low_complexity 1 28 0 7 1434 617 225 154 84 chr5 111315632 111315918 -41221341 - MERVL_2A-int LTR ERVL -3546 2211 1906 7 1434 3486 228 110 43 chr5 111316291 111316708 -41220551 - MERVL_2A-int LTR ERVL -3782 1979 1538 7 1434 1967 119 198 15 chr5 111316708 111317041 -41220218 + ORR1B1 LTR MaLR 1 394 0 7 1434 3486 228 110 43 chr5 111317041 111317615 -41219644 - MERVL_2A-int LTR ERVL -4224 1537 922 7 1434 2314 210 84 10 chr5 111317779 111318279 -41218980 + MERVL_2A-int LTR ERVL 2339 2875 -2886 7 1434 2224 94 51 6 chr5 111318422 111318733 -41218526 - ORR1A4 LTR MaLR -4 325 1 7 1434 1411 194 105 10 chr5 111319125 111319438 -41217821 + ORR1C1 LTR MaLR 5 347 -31 7 1434 1771 177 124 16 chr5 111319438 111319877 -41217382 + MERVL_2A-int LTR ERVL 2849 3337 -2420 7 1434 1719 181 98 4 chr5 111319874 111320391 -41216868 + MERVL_2A-int LTR ERVL 3862 4427 -1334 7 1434 533 255 82 105 chr5 111320391 111320781 -41216478 + L1M2 LINE L1 4176 4556 -1587 7 1434 801 249 132 10 chr5 111320822 111321126 -41216133 - ORR1D1 LTR MaLR -32 342 2 7 1434 665 232 99 10 chr5 111321127 111321319 -41215940 - ORR1D1-int LTR MaLR 0 1370 1162 7 1434 566 237 36 7 chr5 111321320 111321460 -41215799 + B1F2 SINE Alu 2 145 -4 7 1434 321 308 40 32 chr5 111321513 111321637 -41215622 - B4A SINE B4 -164 128 4 7 1434 349 274 32 0 chr5 111321713 111321808 -41215451 + B4A SINE B4 173 270 -22 7 1434 903 129 6 64 chr5 111322441 111322598 -41214661 + B1_Mur4 SINE Alu 3 150 0 7 1434 1951 93 3 146 chr5 111322732 111322798 -41214461 - ORR1A2 LTR MaLR -4 323 270 7 1434 1144 43 14 0 chr5 111322798 111322939 -41214320 - B1_Mm SINE Alu 0 147 5 7 1434 1951 93 3 146 chr5 111322939 111323249 -41214010 - ORR1A2 LTR MaLR -58 269 1 7 1434 240 254 84 0 chr5 111323391 111323462 -41213797 - Tigger5 DNA MER2_type -71 2335 2259 7 1434 226 297 146 15 chr5 111323481 111323611 -41213648 + B1F SINE Alu 1 147 -2 7 1434 857 151 0 11 chr5 111324317 111324498 -41212761 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1434 1022 142 3 0 chr5 111324518 111324883 -41212376 + (CA)n Simple_repeat Simple_repeat 1 366 0 7 1434 714 318 36 27 chr5 111324906 111325239 -41212020 - L1MC4 LINE L1 -44 7998 7663 7 1434 467 154 34 111 chr5 111325350 111325467 -41211792 - ORR1D1 LTR MaLR -5 369 262 7 1434 415 154 48 1 chr5 111325884 111325983 -41211276 - ORR1D1 LTR MaLR -99 279 176 7 1434 256 192 0 0 chr5 111325978 111326030 -41211229 - ORR1D1 LTR MaLR -332 52 1 7 1434 1255 244 203 99 chr5 111326103 111327059 -41210200 - MTC-int LTR MaLR -198 1060 6 7 1434 26 0 0 0 chr5 111327568 111327594 -41209665 + AT_rich Low_complexity Low_complexity 1 26 0 7 1434 243 0 0 0 chr5 111327719 111327746 -41209513 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1434 279 107 0 164 chr5 111327845 111327883 -41209376 - Lx7 LINE L1 -1952 5744 5716 7 1434 2550 128 52 0 chr5 111327883 111328283 -41208976 - MTC LTR MaLR 0 421 1 7 1434 279 107 0 164 chr5 111328283 111328311 -41208948 - Lx7 LINE L1 -1981 5715 5689 7 1434 470 258 43 62 chr5 111328308 111328469 -41208790 + L1_Mur3 LINE L1 2856 3013 -2867 7 1434 343 72 398 20 chr5 111328475 111328573 -41208686 - B2_Mm2 SINE B2 -14 181 47 7 1434 500 81 14 0 chr5 111328624 111328698 -41208561 - B2_Mm1t SINE B2 -14 179 105 7 1434 1358 69 11 0 chr5 111328704 111328878 -41208381 - B2_Mm1t SINE B2 -14 179 4 7 1434 1110 234 61 118 chr5 111328880 111329382 -41207877 + L1_Mur3 LINE L1 3001 3478 -2402 7 1434 563 172 192 24 chr5 111329382 111329507 -41207752 + B1_Mur4 SINE Alu 5 150 0 7 1434 1110 234 61 118 chr5 111329507 111329527 -41207732 + L1_Mur3 LINE L1 3479 3493 -2387 7 1434 180 0 0 0 chr5 111329533 111329553 -41207706 + (CAA)n Simple_repeat Simple_repeat 3 22 0 7 1434 432 84 13 53 chr5 111329573 111329648 -41207611 + L1_Mur3 LINE L1 3462 3533 -2347 7 1434 251 240 0 0 chr5 111329669 111329744 -41207515 + L1M4 LINE L1 3663 3737 -2409 7 1434 194 0 39 0 chr5 111329745 111329771 -41207488 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1434 799 57 0 0 chr5 111329771 111329876 -41207383 - B1_Mm SINE Alu -9 138 34 7 1434 710 208 20 0 chr5 111329876 111330025 -41207234 + L1_Mur3 LINE L1 3689 3840 -2040 7 1434 784 204 0 30 chr5 111330038 111330205 -41207054 + L1_Mur3 LINE L1 3951 4112 -1768 7 1434 5121 73 60 0 chr5 111330728 111331428 -41205831 - L1VL4 LINE L1 -5330 972 231 7 1434 1199 56 0 0 chr5 111331482 111331625 -41205634 - B1_Mus2 SINE Alu 0 147 5 7 1434 770 171 0 35 chr5 111331643 111331788 -41205471 - B1_Mur2 SINE Alu 0 149 10 7 1434 314 78 375 19 chr5 111331911 111332015 -41205244 - B2_Mm2 SINE B2 -8 187 47 7 1434 960 97 49 0 chr5 111332062 111332206 -41205053 - B2_Mm2 SINE B2 -44 151 1 7 1434 1380 77 22 0 chr5 111332317 111332498 -41204761 + B2_Mm1a SINE B2 2 186 -7 7 1434 205 263 0 17 chr5 111332529 111332587 -41204672 + (CATA)n Simple_repeat Simple_repeat 3 59 0 7 1434 403 273 260 12 chr5 111332614 111332786 -41204473 - ID_B1 SINE B4 -9 215 1 7 1434 22 0 0 0 chr5 111332967 111332989 -41204270 + AT_rich Low_complexity Low_complexity 1 22 0 7 1434 1251 48 0 0 chr5 111333127 111333274 -41203985 + B1_Mm SINE Alu 1 147 0 7 1434 26 0 0 0 chr5 111333912 111333938 -41203321 + AT_rich Low_complexity Low_complexity 1 26 0 7 1434 1038 271 64 14 chr5 111334968 111335334 -41201925 + L1M3 LINE L1 4594 4980 -1163 7 1434 275 269 57 25 chr5 111335339 111335461 -41201798 + Lx8 LINE L1 7337 7462 -11 7 1434 822 210 0 0 chr5 111335662 111336246 -41201013 + (CA)n Simple_repeat Simple_repeat 1 584 0 7 1434 1094 163 16 0 chr5 111336260 111336450 -41200809 - MERVL_2A-int LTR ERVL -86 5675 5483 7 1434 7661 197 109 27 chr5 111336456 111337986 -41199273 - Lx6 LINE L1 -4 7456 5783 7 1434 945 145 40 79 chr5 111337986 111338188 -41199071 - B2_Mm2 SINE B2 -1 194 1 7 1434 7661 137 38 35 chr5 111338188 111338430 -41198829 - Lx6 LINE L1 -1678 5782 5539 7 1434 4165 123 7 5 chr5 111338449 111339055 -41198204 - Lx2 LINE L1 0 6997 6391 7 1434 611 103 0 0 chr5 111339056 111339143 -41198116 - MERVL_2A-int LTR ERVL -313 5448 5362 7 1434 397 48 15 31 chr5 111339143 111339208 -41198051 - ORR1B1-int LTR MaLR -1445 64 1 7 1434 186 71 0 0 chr5 111339223 111339251 -41198008 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1434 1197 48 14 0 chr5 111339251 111339396 -41197863 - B1_Mm SINE Alu 0 147 1 7 1434 1553 181 62 14 chr5 111339398 111339756 -41197503 - ORR1C2 LTR MaLR -9 375 1 7 1434 183 42 0 0 chr5 111339817 111339841 -41197418 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 7 1434 246 116 0 0 chr5 111340366 111340409 -41196850 + (T)n Simple_repeat Simple_repeat 1 43 0 7 1434 575 266 42 42 chr5 111340759 111340975 -41196284 - B3 SINE B2 0 216 1 7 1434 580 216 9 0 chr5 111340975 111341091 -41196168 - B1_Mur1 SINE Alu -16 133 17 7 1434 222 303 108 18 chr5 111340993 111341104 -41196155 - B4 SINE B4 -88 204 84 7 1434 631 262 65 28 chr5 111341464 111341680 -41195579 - MTEb LTR MaLR -119 260 37 7 1434 232 233 160 28 chr5 111341849 111341955 -41195304 + B2_Mm2 SINE B2 1 120 -75 7 1434 3150 148 36 22 chr5 111343140 111343814 -41193445 - MYSERV16_I-int LTR ERVK -485 2357 1069 7 1434 844 185 24 91 chr5 111343819 111344027 -41193232 - MYSERV16_I-int LTR ERVK -1393 933 740 7 1434 2974 171 68 61 chr5 111344044 111344383 -41192876 - MYSERV16_I-int LTR ERVK -1649 677 337 7 1434 1173 68 0 7 chr5 111344383 111344532 -41192727 - B1_Mus1 SINE Alu 0 148 1 7 1434 2974 198 69 53 chr5 111344532 111344946 -41192313 - MYSERV16_I-int LTR ERVK -1990 336 1 7 1434 2249 242 93 42 chr5 111345222 111347520 -41189739 + L1_Mur3 LINE L1 1 709 -7003 7 1434 2296 111 147 0 chr5 111347879 111348266 -41188993 - Lx2 LINE L1 -1 6996 6553 7 1434 420 242 0 0 chr5 111349067 111349199 -41188060 + (TG)n Simple_repeat Simple_repeat 1 132 0 7 1434 941 146 14 0 chr5 111349403 111349547 -41187712 + B1_Mur3 SINE Alu 3 148 -1 7 1434 725 277 19 5 chr5 111349714 111349921 -41187338 - B3 SINE B2 -5 211 2 7 1434 966 238 40 16 chr5 111350348 111350596 -41186663 - ORR1D1 LTR MaLR 0 374 121 7 1434 407 243 111 39 chr5 111350713 111350893 -41186366 - RLTR15 LTR ERVK -153 206 14 7 1434 374 269 26 0 chr5 111350907 111351009 -41186250 - ORR1D1 LTR MaLR -253 125 7 7 1434 572 249 50 80 chr5 111351375 111351410 -41185849 - B3A SINE B2 0 198 173 7 1434 207 0 0 0 chr5 111351410 111351433 -41185826 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 7 1434 572 249 50 80 chr5 111351433 111351598 -41185661 - B3A SINE B2 -26 172 4 7 1434 273 258 75 15 chr5 111351951 111352085 -41185174 - LTR41B LTR ERVL -37 721 580 7 1434 302 254 149 25 chr5 111352572 111352693 -41184566 - LTR41B LTR ERVL -617 141 6 7 1434 763 176 13 20 chr5 111352951 111353102 -41184157 - B1_Mur4 SINE Alu 0 150 1 7 1434 296 330 18 0 chr5 111353231 111353340 -41183919 + MER44B DNA MER2_type 21 131 -419 7 1434 238 191 0 87 chr5 111353534 111353591 -41183668 + MER44B DNA MER2_type 342 397 -153 7 1434 634 234 7 20 chr5 111353591 111353739 -41183520 - B1_Mus2 SINE Alu 0 147 2 7 1434 238 191 0 87 chr5 111353739 111353773 -41183486 + MER44B DNA MER2_type 398 425 -125 7 1434 548 232 126 33 chr5 111354544 111354727 -41182532 + B4 SINE B4 73 272 -20 7 1434 334 274 33 53 chr5 111354913 111355076 -41182183 - L1MA8 LINE L1 -6 6285 6124 7 1434 353 159 40 29 chr5 111355262 111355437 -41181822 + (TG)n Simple_repeat Simple_repeat 1 177 0 7 1434 462 252 8 63 chr5 111355437 111355564 -41181695 - RSINE1 SINE B4 -1 164 45 7 1434 229 206 258 11 chr5 111355568 111355661 -41181598 - B3A SINE B2 -82 116 1 7 1434 365 303 39 29 chr5 111355851 111355953 -41181306 + ID_B1 SINE B4 82 184 -40 7 1434 337 339 8 51 chr5 111355953 111355969 -41181290 + PB1D10 SINE Alu 1 113 -4 7 1434 542 238 40 0 chr5 111356002 111356128 -41181131 + B1_Mur2 SINE Alu 1 131 -18 7 1434 212 329 41 0 chr5 111356632 111356705 -41180554 + B1F1 SINE Alu 1 76 -73 7 1434 279 319 43 17 chr5 111356722 111356837 -41180422 + PB1D7 SINE Alu 1 118 -2 7 1434 22 88 0 0 chr5 111358034 111358091 -41179168 + AT_rich Low_complexity Low_complexity 1 57 0 7 1434 5544 81 10 105 chr5 111358091 111358373 -41178886 - Lx3B LINE L1 -2 6971 6692 7 1434 450 0 0 0 chr5 111358373 111358423 -41178836 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1434 5544 81 10 105 chr5 111358423 111359071 -41178188 - Lx3B LINE L1 -282 6691 6131 7 1434 2415 88 6 23 chr5 111359071 111359422 -41177837 + Lx3B LINE L1 5768 6112 -861 7 1434 371 261 84 54 chr5 111359559 111359725 -41177534 + ID_B1 SINE B4 9 179 -45 7 1434 425 267 0 28 chr5 111359779 111359887 -41177372 + PB1D10 SINE Alu 1 105 -12 7 1434 561 185 115 0 chr5 111360025 111360155 -41177104 - URR1A DNA MER1_type -1 225 81 7 1434 219 250 18 18 chr5 111360306 111360363 -41176896 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1434 24 32 0 0 chr5 111360432 111360463 -41176796 + AT_rich Low_complexity Low_complexity 1 31 0 7 1434 341 259 176 39 chr5 111360753 111360907 -41176352 - ORR1E LTR MaLR -4 375 202 7 1434 2843 230 55 4 chr5 111360929 111361642 -41175617 + L1_Mur3 LINE L1 5090 5838 -42 7 1434 1962 160 64 26 chr5 111361666 111362057 -41175202 + MTC LTR MaLR 1 406 -15 8 1434 2863 52 0 3 chr5 111362099 111362446 -41174813 + ORR1A1 LTR MaLR 1 346 0 8 1434 9827 68 105 11 chr5 111362446 111363999 -41173260 + ORR1A1-int LTR MaLR 1 1699 -93 8 1434 434 167 0 0 chr5 111363992 111364070 -41173189 + MT2A LTR ERVL 155 232 -301 8 1434 741 258 11 22 chr5 111364072 111364254 -41173005 + MERVL_2A-int LTR ERVL 4790 4969 -792 8 1434 733 191 68 0 chr5 111364258 111364420 -41172839 + L1_Mur2 LINE L1 4451 4623 -1254 8 1434 647 144 195 0 chr5 111364461 111364579 -41172680 - B1_Mus1 SINE Alu -7 141 1 8 1434 390 127 0 0 chr5 111364894 111364965 -41172294 + (TA)n Simple_repeat Simple_repeat 1 71 0 8 1434 263 265 79 40 chr5 111366787 111366964 -41170295 - L1M4 LINE L1 -1439 4707 4524 8 1434 1053 194 199 7 chr5 111367105 111367406 -41169853 - RLTR15 LTR ERVK 0 359 1 8 1434 336 48 0 0 chr5 111368584 111368626 -41168633 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1434 289 320 19 28 chr5 111368690 111368796 -41168463 + PB1D7 SINE Alu 1 105 -15 8 1434 698 307 9 5 chr5 111368811 111369024 -41168235 + ID_B1 SINE B4 2 215 -9 8 1434 416 136 37 0 chr5 111369313 111369394 -41167865 + C-rich Low_complexity Low_complexity 4 87 0 8 1434 319 286 33 16 chr5 111369432 111369553 -41167706 - B4A SINE B4 -116 176 54 8 1434 414 295 41 8 chr5 111369677 111369800 -41167459 + ID_B1 SINE B4 90 216 -8 8 1434 211 186 214 0 chr5 111370330 111370400 -41166859 - PB1D10 SINE Alu -10 107 23 8 1434 247 203 68 0 chr5 111370619 111370678 -41166581 - ID_B1 SINE B4 -69 155 93 8 1434 232 308 0 30 chr5 111370854 111370921 -41166338 - ID4 SINE ID -17 66 2 8 1434 1260 98 17 0 chr5 111371140 111371313 -41165946 + B2_Mm2 SINE B2 1 176 -19 8 1434 234 62 0 0 chr5 111371528 111371560 -41165699 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 8 1434 349 223 176 13 chr5 111373604 111373763 -41163496 - ORR1D1 LTR MaLR -8 366 182 8 1434 672 48 0 0 chr5 111373763 111373847 -41163412 + (GA)n Simple_repeat Simple_repeat 1 84 0 8 1434 368 235 40 40 chr5 111373858 111373982 -41163277 - ORR1D1 LTR MaLR -249 125 2 8 1434 421 317 232 0 chr5 111373982 111374238 -41163021 - MTE2b LTR MaLR -64 315 1 8 1434 1213 55 7 0 chr5 111374361 111374507 -41162752 + B1_Mus2 SINE Alu 1 147 0 8 1434 203 214 53 0 chr5 111374663 111374794 -41162465 + (TG)n Simple_repeat Simple_repeat 1 138 0 8 1434 627 274 50 27 chr5 111374809 111375030 -41162229 - B4A SINE B4 -3 289 64 8 1434 290 354 26 9 chr5 111375057 111375171 -41162088 - MER2B DNA MER2_type -14 322 207 8 1434 245 278 0 15 chr5 111375301 111375436 -41161823 + (TATATG)n Simple_repeat Simple_repeat 6 138 0 8 1434 658 194 29 15 chr5 111376074 111376210 -41161049 + B1_Mur3 SINE Alu 1 138 -11 8 1434 198 0 0 0 chr5 111376210 111376232 -41161027 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 8 1434 533 278 10 67 chr5 111376501 111376694 -41160565 + B4 SINE B4 1 182 -110 8 1434 1259 301 108 18 chr5 111376802 111377356 -41159903 + L1MB5 LINE L1 5565 6168 -6 8 1434 1704 26 0 0 chr5 111378543 111378736 -41158523 + B2_Mm1a SINE B2 1 193 0 8 1434 624 157 153 57 chr5 111379279 111379455 -41157804 - B2_Mm2 SINE B2 0 195 3 8 1434 332 282 13 13 chr5 111380412 111380491 -41156768 + B1F SINE Alu 6 84 -65 8 1434 225 344 83 15 chr5 111380491 111380544 -41156715 + B4A SINE B4 91 231 -61 8 1434 360 0 0 0 chr5 111380750 111380790 -41156469 + (TA)n Simple_repeat Simple_repeat 2 41 0 8 1434 439 264 39 69 chr5 111381134 111381264 -41155995 + B1F SINE Alu 24 149 0 8 1434 362 247 0 90 chr5 111381353 111381442 -41155817 - ID4_ SINE ID -1 82 2 8 1434 370 292 19 0 chr5 111381444 111381550 -41155709 - PB1D10 SINE Alu -8 109 2 8 1434 261 0 0 0 chr5 111381629 111381658 -41155601 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1434 370 253 32 0 chr5 111381707 111381802 -41155457 + PB1D7 SINE Alu 12 109 -11 8 1434 1081 217 82 51 chr5 111382138 111382156 -41155103 - Lx9 LINE L1 0 7644 7626 8 1434 1924 169 87 11 chr5 111382156 111382522 -41154737 - ORR1B1 LTR MaLR 0 394 1 8 1434 1081 217 82 51 chr5 111382522 111382857 -41154402 - Lx9 LINE L1 -19 7625 7281 8 1434 432 158 0 0 chr5 111382857 111382952 -41154307 + CT-rich Low_complexity Low_complexity 2 96 0 8 1434 246 32 0 0 chr5 111382952 111382983 -41154276 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1434 941 213 10 5 chr5 111382985 111383188 -41154071 - B3 SINE B2 -12 204 1 8 1434 7371 102 41 6 chr5 111383311 111384411 -41152848 + L1_Mur1 LINE L1 4662 5799 -87 8 1434 707 128 28 0 chr5 111384477 111384618 -41152641 + CT-rich Low_complexity Low_complexity 2 146 0 8 1434 303 154 0 0 chr5 111384636 111384688 -41152571 - MT2B LTR ERVL 0 601 550 8 1434 657 124 80 0 chr5 111384674 111384787 -41152472 - MT2B LTR ERVL -463 138 17 8 1434 180 0 0 0 chr5 111385078 111385098 -41152161 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1434 232 292 116 20 chr5 111385118 111385265 -41151994 - HAL1 LINE L1 -2164 343 183 8 1434 338 80 114 51 chr5 111385621 111385700 -41151559 - B2_Mm2 SINE B2 -7 188 105 8 1434 229 205 176 24 chr5 111385788 111385873 -41151386 - PB1D9 SINE Alu -21 99 2 8 1434 392 80 293 89 chr5 111386152 111386275 -41150984 - B2_Mm2 SINE B2 -1 194 47 8 1434 1273 86 23 0 chr5 111386390 111386565 -41150694 - B2_Mm1t SINE B2 -13 180 2 8 1434 251 244 24 0 chr5 111386836 111386918 -41150341 - MLT1D LTR MaLR -1 504 421 8 1434 539 270 27 62 chr5 111386922 111387068 -41150191 + ID_B1 SINE B4 82 222 -2 8 1434 227 242 130 11 chr5 111388007 111388099 -41149160 - MER34A LTR ERV1 -1 570 468 8 1434 236 325 75 50 chr5 111390501 111390621 -41146638 + RSINE1 SINE B4 22 144 -21 8 1434 23 0 0 0 chr5 111390638 111390661 -41146598 + AT_rich Low_complexity Low_complexity 1 23 0 8 1434 444 209 0 11 chr5 111394212 111394299 -41142960 + B3A SINE B2 2 87 -111 8 1434 361 275 22 0 chr5 111395012 111395103 -41142156 - B4A SINE B4 -192 100 8 8 1434 474 252 24 32 chr5 111395385 111395508 -41141751 + PB1 SINE Alu 6 127 0 8 1434 2044 51 116 0 chr5 111395544 111395836 -41141423 - MTB LTR MaLR 0 400 75 8 1434 279 202 22 11 chr5 111397288 111397378 -41139881 + CT-rich Low_complexity Low_complexity 1 91 0 8 1434 281 271 97 53 chr5 111397378 111397491 -41139768 - B1F1 SINE Alu -21 128 11 8 1434 2066 173 68 2 chr5 111397595 111397989 -41139270 + MTC LTR MaLR 1 420 -1 8 1434 207 0 0 0 chr5 111398092 111398115 -41139144 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 8 1434 294 290 14 0 chr5 111398126 111398195 -41139064 - FAM SINE Alu -84 227 158 8 1434 423 0 0 0 chr5 111398418 111398465 -41138794 + (TC)n Simple_repeat Simple_repeat 2 48 0 8 1434 459 0 0 0 chr5 111398465 111398515 -41138744 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1434 198 103 0 0 chr5 111398516 111398545 -41138714 + (GGAGA)n Simple_repeat Simple_repeat 3 31 0 8 1434 258 32 0 0 chr5 111398550 111398581 -41138678 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 8 1434 758 258 179 6 chr5 111398620 111398955 -41138304 - Lx8 LINE L1 0 7473 7081 8 1434 473 270 158 10 chr5 111398975 111399177 -41138082 - B4A SINE B4 -60 232 1 8 1434 288 0 0 0 chr5 111399420 111399452 -41137807 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1434 356 258 78 8 chr5 111399452 111399581 -41137678 - B1F SINE Alu -11 138 1 8 1434 358 308 39 0 chr5 111399851 111399955 -41137304 - PB1D10 SINE Alu -7 110 3 8 1434 245 303 81 37 chr5 111400235 111400396 -41136863 - L1_Mur3 LINE L1 -51 5829 5662 8 1434 503 208 81 9 chr5 111400443 111400599 -41136660 - Lx3C LINE L1 -1134 5842 5662 8 1434 545 263 8 0 chr5 111401134 111401267 -41135992 + ID_B1 SINE B4 77 210 -14 8 1434 540 216 78 0 chr5 111401301 111401417 -41135842 + B3 SINE B2 6 130 -86 8 1434 191 61 102 0 chr5 111401696 111401745 -41135514 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 8 1434 606 28 0 0 chr5 111401789 111401861 -41135398 + (TC)n Simple_repeat Simple_repeat 1 72 0 8 1434 295 73 36 0 chr5 111402490 111402545 -41134714 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1434 364 193 25 99 chr5 111402574 111402695 -41134564 - B4A SINE B4 -66 226 115 8 1434 326 261 122 34 chr5 111402910 111403057 -41134202 - B4 SINE B4 0 292 133 8 1434 1203 185 19 0 chr5 111403877 111404082 -41133177 + B3 SINE B2 1 209 -7 8 1434 188 295 0 0 chr5 111404902 111404963 -41132296 + MIRc SINE MIR 96 156 -112 8 1434 216 0 0 0 chr5 111405147 111405171 -41132088 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1434 494 158 0 27 chr5 111405171 111405321 -41131938 + GA-rich Low_complexity Low_complexity 1 146 0 8 1434 661 70 10 10 chr5 111406804 111406905 -41130354 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 8 1434 567 157 10 0 chr5 111406917 111407019 -41130240 - B1_Mus1 SINE Alu -45 103 1 8 1434 398 336 0 43 chr5 111407052 111407167 -41130092 + PB1 SINE Alu 4 113 -14 8 1434 27 0 0 0 chr5 111407304 111407331 -41129928 + AT_rich Low_complexity Low_complexity 1 27 0 8 1434 24 0 0 0 chr5 111408526 111408550 -41128709 + GC_rich Low_complexity Low_complexity 1 24 0 8 1434 22 35 0 0 chr5 111408578 111408607 -41128652 + GC_rich Low_complexity Low_complexity 1 29 0 8 1434 585 28 0 0 chr5 111411116 111411187 -41126072 + (TG)n Simple_repeat Simple_repeat 1 71 0 8 1435 369 0 0 0 chr5 111411821 111411862 -41125397 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 8 1435 1660 182 34 3 chr5 111412544 111412897 -41124362 + ORR1B1 LTR MaLR 9 372 -22 9 1435 182 91 0 29 chr5 111413592 111413626 -41123633 + (TGGGGG)n Simple_repeat Simple_repeat 4 36 0 9 1435 327 192 0 0 chr5 111413835 111413913 -41123346 + CT-rich Low_complexity Low_complexity 2 79 0 9 1435 291 162 132 26 chr5 111413918 111413994 -41123265 - PB1D9 SINE Alu -1 119 36 9 1435 228 163 23 0 chr5 111414610 111414653 -41122606 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1435 189 0 0 0 chr5 111414768 111414789 -41122470 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1435 3263 21 29 3 chr5 111414977 111415363 -41121896 - MTA_Mm LTR MaLR 0 396 1 9 1435 284 308 47 30 chr5 111415464 111415626 -41121633 - B4A SINE B4 -114 178 4 9 1435 667 232 125 0 chr5 111416811 111416979 -41120280 - Lx6 LINE L1 -10 7450 7262 9 1435 331 300 15 35 chr5 111417162 111417369 -41119890 - L1MA4 LINE L1 -150 6006 5803 9 1435 873 120 6 25 chr5 111417538 111417700 -41119559 + CT-rich Low_complexity Low_complexity 4 162 0 9 1435 536 244 0 34 chr5 111417718 111417837 -41119422 - RSINE1 SINE B4 -40 125 11 9 1435 313 234 193 23 chr5 111417874 111418045 -41119214 - B3 SINE B2 -12 204 5 9 1435 258 258 47 26 chr5 111418045 111418160 -41119099 - L1MA4 LINE L1 -689 5611 5496 9 1435 687 272 64 12 chr5 111418484 111418733 -41118526 - L1MA4 LINE L1 -1118 5025 4764 9 1435 26 0 0 0 chr5 111419098 111419124 -41118135 + AT_rich Low_complexity Low_complexity 1 26 0 9 1435 640 302 20 10 chr5 111419374 111419578 -41117681 + ID_B1 SINE B4 1 206 -18 9 1435 279 0 0 0 chr5 111419669 111419700 -41117559 + (T)n Simple_repeat Simple_repeat 1 31 0 9 1435 599 205 0 0 chr5 111419700 111419812 -41117447 - B1_Mur3 SINE Alu -37 112 1 9 1435 285 344 87 43 chr5 111420139 111420461 -41116798 - Tigger15a DNA TcMar -67 648 313 9 1435 1411 162 150 43 chr5 111420833 111421206 -41116053 - MTC LTR MaLR -8 413 1 9 1435 1572 98 132 123 chr5 111421306 111421631 -41115628 - ORR1A4 LTR MaLR 0 329 2 9 1435 815 251 22 38 chr5 111422353 111422581 -41114678 - B4A SINE B4 -40 252 26 9 1435 350 199 24 36 chr5 111422887 111423146 -41114113 + CT-rich Low_complexity Low_complexity 1 255 0 9 1435 301 330 0 0 chr5 111423160 111423248 -41114011 - PB1 SINE Alu -11 116 29 9 1435 2113 153 89 13 chr5 111423364 111423755 -41113504 + MTC LTR MaLR 1 421 0 9 1435 425 265 8 57 chr5 111424476 111424600 -41112659 - B3A SINE B2 -80 118 1 9 1435 28 0 0 0 chr5 111424621 111424649 -41112610 + AT_rich Low_complexity Low_complexity 1 28 0 9 1435 564 243 28 14 chr5 111424665 111424807 -41112452 + B3 SINE B2 60 203 -13 9 1435 274 220 0 35 chr5 111424809 111424894 -41112365 + (CATG)n Simple_repeat Simple_repeat 3 84 0 9 1435 40 37 0 0 chr5 111424909 111424963 -41112296 + AT_rich Low_complexity Low_complexity 1 54 0 9 1435 391 244 77 56 chr5 111425013 111425156 -41112103 + ID_B1 SINE B4 2 147 -77 9 1435 436 0 137 0 chr5 111425156 111425280 -41111979 + (CAGG)n Simple_repeat Simple_repeat 4 144 0 9 1435 333 257 0 54 chr5 111425283 111425394 -41111865 + ID_B1 SINE B4 120 224 0 9 1435 440 211 91 112 chr5 111427385 111427582 -41109677 + B4A SINE B4 48 240 -52 9 1435 1059 143 84 235 chr5 111427746 111428027 -41109232 - ORR1D1 LTR MaLR 0 374 158 9 1435 207 0 0 0 chr5 111428027 111428050 -41109209 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 9 1435 1059 143 84 235 chr5 111428050 111428197 -41109062 - ORR1D1 LTR MaLR -217 157 11 9 1435 429 129 0 0 chr5 111428584 111428654 -41108605 + (TG)n Simple_repeat Simple_repeat 2 71 0 9 1435 23 0 0 0 chr5 111428901 111428924 -41108335 + AT_rich Low_complexity Low_complexity 1 23 0 9 1435 3912 42 25 0 chr5 111428924 111429396 -41107863 - L1_Mus1 LINE L1 -2 6565 6082 9 1435 197 65 0 31 chr5 111429645 111429677 -41107582 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 9 1435 22 0 0 0 chr5 111430396 111430418 -41106841 + AT_rich Low_complexity Low_complexity 1 22 0 9 1435 638 174 64 14 chr5 111430716 111430856 -41106403 - B1_Mur1 SINE Alu 0 149 3 9 1435 207 361 15 29 chr5 111431026 111431163 -41106096 + (TG)n Simple_repeat Simple_repeat 2 136 0 9 1435 240 293 13 0 chr5 111431056 111431131 -41106128 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 9 1435 274 352 0 0 chr5 111431168 111431259 -41106000 - RMER15 LTR ERVL -113 462 372 9 1435 248 296 85 12 chr5 111431271 111431353 -41105906 - Lx8 LINE L1 -251 7222 7135 9 1435 190 115 48 32 chr5 111431356 111431419 -41105840 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1435 206 131 63 32 chr5 111431419 111431482 -41105777 + (TATG)n Simple_repeat Simple_repeat 1 65 0 9 1435 202 133 77 11 chr5 111431492 111431583 -41105676 + (TG)n Simple_repeat Simple_repeat 2 98 0 9 1435 437 157 39 39 chr5 111431687 111431866 -41105393 + (TG)n Simple_repeat Simple_repeat 1 179 0 9 1435 238 290 51 6 chr5 111432668 111432824 -41104435 + (TCTA)n Simple_repeat Simple_repeat 4 166 0 9 1435 456 334 69 2 chr5 111433436 111433580 -41103679 - B1F1 SINE Alu -6 143 1 9 1435 1151 252 36 36 chr5 111433604 111433962 -41103297 + MTD LTR MaLR 28 385 -34 9 1435 209 57 29 0 chr5 111433963 111433998 -41103261 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 9 1435 818 220 50 0 chr5 111434048 111434230 -41103029 - B3A SINE B2 -1 197 7 9 1435 201 197 0 0 chr5 111434295 111434361 -41102898 + (TA)n Simple_repeat Simple_repeat 1 66 0 9 1435 457 178 0 0 chr5 111434595 111434685 -41102574 - PB1D9 SINE Alu -9 111 22 9 1435 497 216 111 7 chr5 111435140 111435275 -41101984 - B1F SINE Alu 0 149 1 9 1435 398 229 0 50 chr5 111437071 111437172 -41100087 - RSINE1 SINE B4 -59 106 11 9 1435 896 154 0 32 chr5 111438101 111438255 -41099004 - B1_Mur1 SINE Alu 0 149 1 9 1435 294 269 0 44 chr5 111438354 111438517 -41098742 + CT-rich Low_complexity Low_complexity 1 155 0 9 1435 292 314 70 30 chr5 111438532 111438732 -41098527 - Lx8 LINE L1 -61 7412 7205 9 1435 2565 299 49 24 chr5 111438864 111439808 -41097451 - Lx8 LINE L1 -470 7003 6037 9 1435 26 0 0 0 chr5 111442263 111442289 -41094970 + AT_rich Low_complexity Low_complexity 1 26 0 9 1435 226 311 0 0 chr5 111445928 111445973 -41091286 + RSINE1 SINE B4 98 142 -23 9 1435 250 260 13 25 chr5 111446523 111446602 -41090657 + GA-rich Low_complexity Low_complexity 1 78 0 9 1435 21 36 0 0 chr5 111447229 111447257 -41090002 + AT_rich Low_complexity Low_complexity 1 28 0 9 1435 490 326 17 0 chr5 111447278 111447456 -41089803 - B3A SINE B2 -17 181 1 9 1435 385 257 56 19 chr5 111448327 111448434 -41088825 + B3A SINE B2 4 114 -84 9 1435 233 256 164 50 chr5 111449098 111449238 -41088021 + YREP_Mm Unknown Unknown 141 296 -1516 9 1435 614 231 83 15 chr5 111449124 111449256 -41088003 - ID_B1 SINE B4 0 224 84 9 1435 306 0 0 0 chr5 111449258 111449292 -41087967 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1435 414 0 0 0 chr5 111449292 111449337 -41087922 + (GA)n Simple_repeat Simple_repeat 1 46 0 9 1435 267 245 0 0 chr5 111449337 111449386 -41087873 - RSINE1 SINE B4 -114 51 3 9 1435 2409 179 0 5 chr5 111449396 111449806 -41087453 + MTC LTR MaLR 14 421 0 9 1435 501 224 10 58 chr5 111449946 111450050 -41087209 - B1F2 SINE Alu -50 99 1 9 1435 322 207 0 118 chr5 111449979 111450072 -41087187 - B4A SINE B4 -142 150 69 9 1435 1089 144 11 21 chr5 111450554 111450745 -41086514 - B3 SINE B2 0 216 28 9 1435 836 214 105 42 chr5 111450772 111450895 -41086364 - Lx5 LINE L1 -5 7045 6905 9 1435 348 24 0 0 chr5 111450895 111450936 -41086323 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1435 836 214 105 42 chr5 111450936 111451051 -41086208 - Lx5 LINE L1 -146 6904 6794 9 1435 227 143 0 0 chr5 111451057 111451092 -41086167 - B3A SINE B2 -163 35 1 9 1435 191 204 0 20 chr5 111453584 111453634 -41083625 + CT-rich Low_complexity Low_complexity 4 52 0 9 1435 324 70 0 0 chr5 111453655 111453698 -41083561 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1435 394 192 212 0 chr5 111453779 111453878 -41083381 - B1_Mus2 SINE Alu -22 125 6 9 1435 394 238 99 68 chr5 111453793 111453955 -41083304 - B4 SINE B4 -123 169 3 9 1435 207 0 0 0 chr5 111453960 111453983 -41083276 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9 1435 246 32 0 0 chr5 111454850 111454881 -41082378 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1435 221 356 14 0 chr5 111454896 111454969 -41082290 + PB1D10 SINE Alu 32 105 -12 9 1435 399 41 0 0 chr5 111456024 111456073 -41081186 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 9 1435 530 258 53 8 chr5 111458419 111458552 -41078707 + RSINE1 SINE B4 3 141 -24 9 1435 287 157 0 0 chr5 111458839 111458890 -41078369 + L1MC1 LINE L1 6265 6315 -18 9 1435 309 173 12 107 chr5 111458927 111459011 -41078248 + PB1D10 SINE Alu 42 117 0 9 1435 321 338 15 23 chr5 111459062 111459195 -41078064 + ID_B1 SINE B4 80 211 -13 9 1435 385 252 77 10 chr5 111459775 111459879 -41077380 + RMER15 LTR ERVL 369 479 -96 9 1435 207 289 246 21 chr5 111459882 111460007 -41077252 - L2 LINE L2 -625 2794 2639 9 1435 189 0 0 0 chr5 111460007 111460028 -41077231 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 9 1435 207 289 246 21 chr5 111460028 111460227 -41077032 - L2 LINE L2 -781 2638 2398 9 1435 524 264 34 95 chr5 111460702 111460924 -41076335 + B3A SINE B2 1 212 -4 9 1435 229 295 41 31 chr5 111462424 111462522 -41074737 - RMER1C Other Other -14 1328 1230 9 1435 1746 276 107 41 chr5 111462623 111462804 -41074455 - Lx8 LINE L1 -123 7350 7142 9 1435 2251 95 36 60 chr5 111462804 111463139 -41074120 + ORR1A2 LTR MaLR 1 327 0 9 1435 1746 276 107 41 chr5 111463139 111463386 -41073873 - Lx8 LINE L1 -332 7141 6873 9 1435 396 0 0 0 chr5 111463386 111463430 -41073829 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1435 1746 276 107 41 chr5 111463430 111463703 -41073556 - Lx8 LINE L1 -601 6872 6602 9 1435 229 173 92 13 chr5 111464513 111464589 -41072670 - L1MC4a LINE L1 -8 7874 7793 9 1435 316 338 92 0 chr5 111465226 111465368 -41071891 - L1MEc LINE L1 -5228 1172 1018 9 1435 321 349 137 55 chr5 111465511 111465927 -41071332 - L1MEc LINE L1 -5603 797 348 9 1435 183 80 0 0 chr5 111466128 111466153 -41071106 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1435 446 274 32 0 chr5 111466801 111466896 -41070363 - B1_Mur2 SINE Alu -50 99 2 1 1435 708 203 31 47 chr5 111466915 111467086 -41070173 - B3 SINE B2 -1 215 63 1 1435 264 59 0 0 chr5 111467147 111467181 -41070078 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1435 225 304 62 12 chr5 111467200 111467280 -41069979 - MIRm SINE MIR -83 193 110 1 1435 243 254 30 0 chr5 111468711 111468778 -41068481 + CT-rich Low_complexity Low_complexity 4 72 0 1 1435 1034 223 15 0 chr5 111470223 111470425 -41066834 + B3 SINE B2 11 215 -1 1 1435 242 310 0 0 chr5 111470430 111470488 -41066771 + B4A SINE B4 217 274 -18 1 1435 189 214 0 0 chr5 111471633 111471675 -41065584 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1435 180 0 0 0 chr5 111472387 111472407 -41064852 + (TGGG)n Simple_repeat Simple_repeat 3 22 0 1 1435 1063 161 16 16 chr5 111472407 111472596 -41064663 + RMER5 LTR ERV1 18 206 -328 1 1435 432 118 0 0 chr5 111473722 111473790 -41063469 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1435 204 97 0 0 chr5 111473965 111473996 -41063263 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 1 1435 189 107 0 0 chr5 111474131 111474159 -41063100 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 1 1435 206 139 0 27 chr5 111474208 111474245 -41063014 + C-rich Low_complexity Low_complexity 1 36 0 1 1435 222 191 172 16 chr5 111474449 111474513 -41062746 - B3A SINE B2 -123 75 2 1 1435 589 237 0 0 chr5 111475202 111475320 -41061939 - B3 SINE B2 -96 120 3 1 1435 945 258 45 45 chr5 111476617 111476885 -41060374 + B4 SINE B4 2 269 -23 1 1435 547 156 16 0 chr5 111476890 111477012 -41060247 + CT-rich Low_complexity Low_complexity 2 125 0 1 1435 396 0 0 0 chr5 111477012 111477056 -41060203 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1435 297 109 0 0 chr5 111477564 111477610 -41059649 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1 1435 235 183 141 35 chr5 111477770 111477855 -41059404 - Lx7 LINE L1 0 7696 7603 1 1435 225 345 69 0 chr5 111478492 111478579 -41058680 + MER45C DNA Tip100 84 176 -777 1 1435 303 161 177 0 chr5 111478808 111478870 -41058389 + MER45C DNA Tip100 878 950 -3 1 1435 204 61 102 0 chr5 111479658 111479707 -41057552 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 1 1435 255 258 30 0 chr5 111479715 111479781 -41057478 + MIRb SINE MIR 141 208 -60 1 1435 992 269 99 51 chr5 111480153 111480685 -41056574 - L1MB4 LINE L1 -276 5907 5360 1 1435 417 175 36 100 chr5 111480700 111480840 -41056419 - L1MB4 LINE L1 -1016 5130 5000 1 1435 2307 72 66 0 chr5 111480867 111481172 -41056087 + ORR1A2 LTR MaLR 1 325 -2 1 1435 692 283 35 55 chr5 111481202 111481698 -41055561 - L1M4 LINE L1 -1038 5108 4612 1 1435 868 274 146 49 chr5 111481756 111482209 -41055050 + Lx8 LINE L1 6908 7404 -69 1 1435 207 0 0 0 chr5 111484527 111484550 -41052709 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1435 387 0 0 0 chr5 111485385 111485428 -41051831 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1435 399 98 0 0 chr5 111486136 111486197 -41051062 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1435 219 300 50 0 chr5 111488127 111488207 -41049052 + MIRb SINE MIR 115 198 -70 1 1435 1131 178 38 9 chr5 111489502 111489712 -41047547 + B3 SINE B2 1 216 0 1 1435 351 0 0 0 chr5 111490405 111490444 -41046815 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1435 290 83 0 62 chr5 111491007 111491071 -41046188 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 1 1435 210 37 0 0 chr5 111491200 111491227 -41046032 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1435 475 135 315 0 chr5 111491452 111491563 -41045696 + B1_Mus1 SINE Alu 1 146 -2 1 1435 216 0 0 0 chr5 111491567 111491591 -41045668 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1435 680 237 126 31 chr5 111492167 111492389 -41044870 + RMER5 LTR ERV1 40 282 -252 1 1435 546 277 45 11 chr5 111492419 111492598 -41044661 + RMER5 LTR ERV1 350 534 0 1 1435 218 32 32 0 chr5 111494301 111494332 -41042927 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 1 1435 221 279 44 0 chr5 111496269 111496337 -41040922 + MIRc SINE MIR 170 240 -28 1 1435 285 338 59 52 chr5 111496340 111496493 -41040766 - MamRep1161 DNA TcMar -763 194 41 1 1435 270 276 20 136 chr5 111496388 111496535 -41040724 - MamRep1161 DNA Tigger -806 151 22 1 1435 319 236 272 20 chr5 111497733 111497880 -41039379 - B3A SINE B2 -14 184 1 1 1435 546 285 34 39 chr5 111498017 111498196 -41039063 - B3 SINE B2 -37 179 2 1 1435 2263 141 27 61 chr5 111498209 111498617 -41038642 + ORR1B1 LTR MaLR 1 394 0 1 1435 716 301 94 40 chr5 111498964 111499262 -41037997 + MER82 DNA MER2_type 11 324 -329 1 1435 282 257 95 0 chr5 111499349 111499423 -41037836 + MER82 DNA MER2_type 573 653 0 1 1435 239 250 78 22 chr5 111499490 111499580 -41037679 - B4A SINE B4 -14 278 184 1 1435 398 230 0 16 chr5 111499872 111500000 -41037259 + (TATG)n Simple_repeat Simple_repeat 4 129 0 1 1435 503 249 12 0 chr5 111500011 111500184 -41037075 + (TATG)n Simple_repeat Simple_repeat 4 178 0 1 1435 652 199 26 19 chr5 111500235 111500501 -41036758 + (TATG)n Simple_repeat Simple_repeat 1 267 0 1 1435 790 129 45 0 chr5 111500852 111500984 -41036275 + URR1B DNA MER1_type 88 225 0 2 1435 482 257 111 21 chr5 111501005 111501240 -41036019 - L1M5 LINE L1 -437 5742 5487 3 1435 821 246 172 43 chr5 111501321 111501518 -41035741 + Lx8 LINE L1 7048 7276 -197 4 1435 1148 196 27 18 chr5 111501518 111501741 -41035518 + URR1B DNA MER1_type 1 225 0 5 1435 821 246 172 43 chr5 111501741 111501916 -41035343 + Lx8 LINE L1 7277 7468 -5 4 1435 234 185 88 98 chr5 111501827 111501929 -41035330 + RMER1C Other Other 1228 1328 -14 6 1435 256 269 161 36 chr5 111502138 111502250 -41035009 + RSINE1 SINE B4 5 130 -35 7 1435 850 226 56 0 chr5 111505334 111505529 -41031730 - B3 SINE B2 -6 210 5 8 1435 8863 214 85 101 chr5 111505980 111506082 -41031177 - L1_Rod LINE L1 0 5847 5753 9 1435 889 130 175 0 chr5 111506082 111506236 -41031023 - B2_Mm2 SINE B2 -14 181 1 1 1435 8863 214 85 101 chr5 111506236 111506896 -41030363 - L1_Rod LINE L1 -95 5752 5110 9 1435 1527 47 15 59 chr5 111506896 111507100 -41030159 - B2_Mm2 SINE B2 0 195 1 1 1435 8863 214 85 101 chr5 111507100 111508642 -41028617 - L1_Rod LINE L1 -738 5109 3551 9 1435 319 129 0 0 chr5 111508642 111508698 -41028561 - B1_Mus1 SINE Alu -90 60 5 1 1435 8863 214 85 101 chr5 111508698 111509674 -41027585 - L1_Rod LINE L1 -738 3550 2562 9 1435 484 360 0 6 chr5 111510446 111510611 -41026648 + (TG)n Simple_repeat Simple_repeat 2 165 0 1 1435 503 245 7 40 chr5 111510981 111511130 -41026129 - B1F1 SINE Alu -1 148 5 1 1435 268 170 0 0 chr5 111511797 111511844 -41025415 - B3 SINE B2 -5 211 165 1 1435 731 100 0 43 chr5 111512158 111512346 -41024913 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1435 310 124 30 30 chr5 111512332 111512432 -41024827 + (CAGAGA)n Simple_repeat Simple_repeat 3 102 0 1 1435 237 286 0 117 chr5 111512434 111512514 -41024745 + B4 SINE B4 196 271 -21 1 1435 822 73 0 0 chr5 111512514 111512624 -41024635 + (CA)n Simple_repeat Simple_repeat 1 110 0 1 1435 237 286 0 117 chr5 111512624 111512646 -41024613 + B4 SINE B4 272 286 -6 1 1435 216 0 0 0 chr5 111512743 111512767 -41024492 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1435 218 225 92 66 chr5 111512912 111512988 -41024271 + PB1D9 SINE Alu 41 118 -2 2 1435 655 253 146 26 chr5 111513083 111513426 -41023833 + MTD LTR MaLR 15 405 -14 2 1435 366 341 37 64 chr5 111513581 111513769 -41023490 - ID_B1 SINE B4 -40 184 2 2 1435 187 229 43 0 chr5 111514462 111514532 -41022727 + CT-rich Low_complexity Low_complexity 4 76 0 2 1435 1312 266 32 53 chr5 111514532 111515001 -41022258 - RMER5 LTR ERV1 -2 532 74 2 1435 574 248 28 0 chr5 111515026 111515171 -41022088 - B1F SINE Alu 0 149 1 2 1435 275 221 9 120 chr5 111515641 111515656 -41021603 - RLTR25B LTR ERVK -491 537 524 2 1435 405 0 0 0 chr5 111515656 111515701 -41021558 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 2 1435 275 221 9 120 chr5 111515701 111515793 -41021466 - RLTR25B LTR ERVK -505 523 442 2 1435 1023 48 0 0 chr5 111515793 111515827 -41021432 - B1_Mm SINE Alu -15 132 7 2 1435 606 239 0 89 chr5 111515827 111515880 -41021379 - ID_B1 SINE B4 -15 209 47 3 1435 3657 46 5 2 chr5 111516601 111517036 -41020223 - RLTR10C LTR ERVK 0 436 1 3 1435 45872 12 7 1 chr5 111517036 111522106 -41015153 - MMERVK10C-int LTR ERVK 0 7581 1885 3 1435 327 155 17 0 chr5 111522113 111522171 -41015088 - MMERVK10C-int LTR ERVK -5627 1779 1721 3 1435 779 198 231 45 chr5 111522155 111522541 -41014718 - MMERVK10C-int LTR ERVK -4795 611 312 3 1435 864 151 4 180 chr5 111522629 111522896 -41014363 - MMERVK10C-int LTR ERVK -6633 948 729 3 1435 2876 55 0 0 chr5 111522894 111523237 -41014022 - MMERVK10C-int LTR ERVK -7238 343 1 3 1435 3657 46 5 2 chr5 111523237 111523672 -41013587 - RLTR10C LTR ERVK 0 436 1 3 1435 1001 215 33 23 chr5 111524255 111524469 -41012790 - B3 SINE B2 0 216 1 3 1435 306 0 0 0 chr5 111524472 111524506 -41012753 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1435 227 256 49 49 chr5 111524533 111524615 -41012644 + ID4 SINE ID 2 83 0 3 1435 184 176 29 0 chr5 111524622 111524656 -41012603 - L3 LINE CR1 -4344 145 111 3 1435 491 299 0 0 chr5 111526416 111526533 -41010726 + PB1 SINE Alu 2 118 -9 3 1435 306 0 0 0 chr5 111528559 111528593 -41008666 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1435 1068 275 148 21 chr5 111528775 111529248 -41008011 - RMER5 LTR ERV1 -1 533 1 3 1435 434 201 33 18 chr5 111530232 111530335 -41006924 + PB1D9 SINE Alu 2 119 -1 4 1435 217 319 0 0 chr5 111530452 111530521 -41006738 - PB1D10 SINE Alu -1 116 48 4 1435 1214 54 0 0 chr5 111531835 111531983 -41005276 + B1_Mus1 SINE Alu 1 148 0 4 1435 327 292 21 0 chr5 111532219 111532315 -41004944 + PB1 SINE Alu 21 118 -9 4 1435 332 214 10 160 chr5 111532354 111532454 -41004805 + RSINE1 SINE B4 43 127 -38 4 1435 447 19 0 0 chr5 111532456 111532508 -41004751 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1435 396 209 107 79 chr5 111532767 111532907 -41004352 - B1F1 SINE Alu -4 145 2 4 1435 21 0 0 0 chr5 111533807 111533828 -41003431 + AT_rich Low_complexity Low_complexity 1 21 0 4 1435 496 148 121 9 chr5 111535313 111535429 -41001830 - B1_Mur1 SINE Alu -3 146 18 4 1435 655 191 23 8 chr5 111535508 111535640 -41001619 - B1F1 SINE Alu -15 134 1 4 1435 191 412 12 0 chr5 111537429 111537509 -40999750 + MIRb SINE MIR 28 108 -160 5 1435 598 281 68 36 chr5 111539167 111539359 -40997900 - B3A SINE B2 0 198 1 5 1435 1382 92 11 0 chr5 111539412 111539596 -40997663 - B2_Mm1t SINE B2 -6 187 2 5 1435 302 191 32 0 chr5 111540087 111540150 -40997109 - ORR1B2 LTR MaLR 0 384 320 5 1435 3698 247 51 26 chr5 111540162 111541160 -40996099 - ORR1B2-int LTR MaLR -345 1025 3 5 1435 1952 156 31 37 chr5 111541162 111541361 -40995898 - ORR1B2 LTR MaLR 0 367 166 5 1435 477 0 0 0 chr5 111541361 111541414 -40995845 + (GA)n Simple_repeat Simple_repeat 2 54 0 5 1435 1952 156 31 37 chr5 111541414 111541567 -40995692 - ORR1B2 LTR MaLR -202 165 17 5 1435 983 126 14 0 chr5 111541576 111541719 -40995540 - B1_Mur4 SINE Alu -1 149 5 5 1436 301 328 26 9 chr5 111543068 111543182 -40994077 + HAL1-2a_MD LINE L1 2415 2530 -494 5 1436 465 222 0 0 chr5 111543297 111543378 -40993881 + ID_B1 SINE B4 140 220 -4 5 1436 531 224 9 0 chr5 111543418 111543525 -40993734 - B1_Mur2 SINE Alu -6 143 36 5 1436 378 0 0 0 chr5 111543543 111543585 -40993674 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1436 412 289 86 24 chr5 111545374 111545583 -40991676 - L1MEg LINE L1 -4838 1246 1025 6 1436 345 262 12 0 chr5 111545695 111545775 -40991484 - B3 SINE B2 -135 81 1 6 1436 336 333 38 54 chr5 111545812 111545996 -40991263 - B3A SINE B2 -16 182 2 6 1436 657 222 151 5 chr5 111546049 111546235 -40991024 - B3 SINE B2 -3 213 1 6 1436 252 86 0 0 chr5 111548576 111548611 -40988648 + (TTC)n Simple_repeat Simple_repeat 2 36 0 6 1436 977 156 0 11 chr5 111553374 111553556 -40983703 + (CCCA)n Simple_repeat Simple_repeat 1 180 0 6 1436 393 149 0 0 chr5 111553579 111553646 -40983613 + (CCCA)n Simple_repeat Simple_repeat 4 70 0 6 1436 1225 162 45 27 chr5 111553726 111553948 -40983311 + URR1A DNA MER1_type 1 226 0 6 1436 190 136 22 22 chr5 111553999 111554044 -40983215 + CT-rich Low_complexity Low_complexity 1 45 0 6 1436 303 85 0 0 chr5 111554683 111554730 -40982529 + (CTTA)n Simple_repeat Simple_repeat 3 49 0 6 1436 388 256 17 0 chr5 111555220 111555396 -40981863 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 6 1436 648 235 0 3 chr5 111555378 111555721 -40981538 + (TG)n Simple_repeat Simple_repeat 1 342 0 7 1436 548 280 39 28 chr5 111555769 111555949 -40981310 - B3A SINE B2 -16 182 1 7 1436 4215 65 40 9 chr5 111556403 111556946 -40980313 - LTRIS2 LTR ERV1 0 564 5 7 1436 611 200 86 29 chr5 111556961 111557100 -40980159 + B1F SINE Alu 1 147 -2 7 1436 273 316 35 9 chr5 111557270 111557385 -40979874 + L2a LINE L2 3292 3409 -17 7 1436 180 0 0 0 chr5 111558800 111558820 -40978439 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 7 1436 1016 8 0 8 chr5 111558820 111558942 -40978317 - B1_Mus1 SINE Alu 0 148 28 7 1436 273 238 172 86 chr5 111558864 111559108 -40978151 - RLTR25B LTR ERVK -519 509 245 7 1436 578 14 0 14 chr5 111559664 111559736 -40977523 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 7 1436 1141 65 0 7 chr5 111559740 111559880 -40977379 - B1_Mus1 SINE Alu -7 141 3 7 1436 228 67 0 0 chr5 111560082 111560112 -40977147 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 8 1436 354 271 177 27 chr5 111560447 111560633 -40976626 - MLT1I LTR MaLR 0 411 198 8 1436 500 254 154 7 chr5 111563346 111563489 -40973770 + ID_B1 SINE B4 2 165 -59 8 1436 374 158 28 62 chr5 111563980 111564156 -40973103 + (GGGTG)n Simple_repeat Simple_repeat 5 174 0 8 1436 1397 220 93 6 chr5 111564548 111564859 -40972400 + MTD LTR MaLR 82 419 0 8 1436 704 223 31 0 chr5 111564936 111565066 -40972193 + B1_Mur4 SINE Alu 7 140 -10 8 1436 247 368 11 0 chr5 111565279 111565374 -40971885 + (CA)n Simple_repeat Simple_repeat 1 96 0 8 1436 30 27 0 0 chr5 111566236 111566273 -40970986 + AT_rich Low_complexity Low_complexity 1 37 0 8 1436 300 345 27 27 chr5 111566370 111566519 -40970740 - MIRb SINE MIR -1 267 119 8 1436 263 282 0 27 chr5 111569199 111569300 -40967959 + B3A SINE B2 19 113 -103 8 1436 255 207 35 0 chr5 111569275 111569331 -40967928 + B4 SINE B4 38 95 -197 9 1436 747 218 46 26 chr5 111569331 111569482 -40967777 + B3A SINE B2 1 154 -44 9 1436 372 22 0 0 chr5 111569482 111569527 -40967732 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1436 422 274 44 0 chr5 111569535 111569648 -40967611 + B4 SINE B4 83 200 -92 9 1436 229 296 113 0 chr5 111569898 111569937 -40967322 - B1_Mus2 SINE Alu -1 149 21 9 1436 382 250 0 0 chr5 111569937 111570013 -40967246 - ID_B1 SINE B4 -47 177 102 9 1436 225 370 104 0 chr5 111571024 111571159 -40966100 + L2a LINE L2 3272 3420 -6 9 1436 588 142 47 0 chr5 111571188 111571315 -40965944 + CT-rich Low_complexity Low_complexity 5 137 0 9 1436 232 279 263 21 chr5 111571538 111571732 -40965527 - MER5C DNA MER1_type -1 312 72 9 1436 234 216 165 41 chr5 111573061 111573182 -40964077 - L1MC4 LINE L1 -135 7907 7772 9 1436 267 135 39 0 chr5 111573253 111573305 -40963954 - L1MC4 LINE L1 -217 7825 7772 9 1436 539 238 131 9 chr5 111573345 111573574 -40963685 + Lx8 LINE L1 6870 7126 -347 1 1436 964 217 187 65 chr5 111573694 111574063 -40963196 + Lx8 LINE L1 7058 7471 -2 1 1436 437 258 20 103 chr5 111574090 111574293 -40962966 - HAL1-2a_MD LINE L1 -499 2525 2340 1 1436 253 266 256 49 chr5 111574318 111574623 -40962636 - L1MC4 LINE L1 -259 7783 7416 9 1436 532 282 77 0 chr5 111574722 111574903 -40962356 + ORR1E LTR MaLR 1 195 -164 1 1436 418 265 69 25 chr5 111575056 111575215 -40962044 - L1MC4 LINE L1 -901 6981 6816 9 1436 279 218 53 35 chr5 111575357 111575528 -40961731 + (CATATA)n Simple_repeat Simple_repeat 5 178 0 1 1436 317 182 0 0 chr5 111575559 111575614 -40961645 - B1_Mur1 SINE Alu -7 142 88 1 1436 335 294 71 7 chr5 111575697 111575851 -40961408 - L1MC4 LINE L1 -1374 6508 6345 9 1436 878 213 119 0 chr5 111576351 111576553 -40960706 - ORR1D1 LTR MaLR -2 372 147 1 1436 180 176 0 0 chr5 111576561 111576595 -40960664 + GA-rich Low_complexity Low_complexity 1 34 0 1 1436 597 160 139 46 chr5 111576608 111576759 -40960500 - ORR1D1 LTR MaLR -193 181 17 1 1436 689 255 103 73 chr5 111576867 111577219 -40960040 - ORR1E LTR MaLR 0 379 1 1 1436 385 333 133 10 chr5 111578070 111578273 -40958986 + L1MEf LINE L1 736 963 -5237 1 1436 440 313 127 66 chr5 111579005 111579580 -40957679 + L1MEf LINE L1 1221 1830 -4370 1 1436 283 244 60 24 chr5 111580384 111580468 -40956791 - MLT2E LTR ERVL -20 543 457 1 1436 211 255 117 0 chr5 111580775 111580869 -40956390 - PB1D7 SINE Alu -15 105 1 1 1436 191 192 39 0 chr5 111581115 111581167 -40956092 + GA-rich Low_complexity Low_complexity 5 58 0 1 1436 220 262 0 0 chr5 111581803 111581845 -40955414 + (CACG)n Simple_repeat Simple_repeat 1 42 0 1 1436 500 322 49 101 chr5 111582119 111582214 -40955045 + B4 SINE B4 1 93 -199 1 1436 1301 116 11 0 chr5 111582214 111582403 -40954856 + B2_Mm1t SINE B2 1 191 -2 1 1436 500 322 49 101 chr5 111582403 111582614 -40954645 + B4 SINE B4 94 291 -1 1 1436 408 347 85 70 chr5 111583062 111583393 -40953866 - MLT1M LTR MaLR -336 336 1 1 1436 297 259 156 9 chr5 111587536 111587645 -40949614 - MTE2b LTR MaLR -17 362 238 1 1436 592 264 163 29 chr5 111587920 111588166 -40949093 + B4A SINE B4 4 282 -10 1 1436 301 287 0 0 chr5 111588186 111588350 -40948909 + (CA)n Simple_repeat Simple_repeat 1 164 0 1 1436 243 0 0 0 chr5 111588377 111588404 -40948855 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1436 618 279 112 43 chr5 111588519 111588796 -40948463 + MLT1E1A LTR MaLR 385 680 0 1 1436 190 277 11 98 chr5 111588817 111588909 -40948350 + L3 LINE CR1 2104 2187 -2302 1 1436 323 241 0 65 chr5 111590049 111590142 -40947117 + HAL1-3A_ME LINE L1 1976 2062 -796 1 1436 567 305 116 103 chr5 111590421 111590859 -40946400 + Charlie1a DNA MER1_type 284 727 -728 1 1436 433 222 93 0 chr5 111591063 111591171 -40946088 - ID_B1 SINE B4 -2 222 105 1 1436 243 0 0 0 chr5 111593462 111593489 -40943770 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 1436 688 171 26 0 chr5 111594544 111594661 -40942598 + B1_Mus1 SINE Alu 5 124 -24 1 1436 225 0 0 0 chr5 111594808 111594833 -40942426 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1436 351 0 0 0 chr5 111596300 111596339 -40940920 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1436 880 249 70 33 chr5 111596533 111596774 -40940485 + B4A SINE B4 36 285 -7 1 1436 261 151 0 0 chr5 111596855 111596908 -40940351 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1436 583 260 52 7 chr5 111598250 111598405 -40938854 + RSINE1 SINE B4 1 162 -3 1 1436 502 267 62 67 chr5 111598601 111598895 -40938364 + L1_Rod LINE L1 4894 5196 -651 1 1436 501 17 0 0 chr5 111598895 111598953 -40938306 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1436 502 267 62 67 chr5 111598953 111598986 -40938273 + L1_Rod LINE L1 5197 5224 -623 1 1436 1041 129 0 7 chr5 111598986 111599123 -40938136 + B1_Mus1 SINE Alu 1 137 -11 1 1436 222 37 0 0 chr5 111599123 111599150 -40938109 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1436 502 283 104 57 chr5 111599160 111599471 -40937788 + L1_Rod LINE L1 5225 5625 -675 1 1436 591 252 38 51 chr5 111599876 111600037 -40937222 + B3A SINE B2 1 157 -41 1 1436 222 37 0 0 chr5 111600037 111600064 -40937195 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1436 272 292 59 119 chr5 111600064 111600104 -40937155 + B2_Mm1a SINE B2 150 190 -3 1 1436 782 259 98 21 chr5 111600224 111600417 -40936842 + B3 SINE B2 3 210 -6 1 1436 213 214 16 24 chr5 111600759 111600893 -40936366 + CT-rich Low_complexity Low_complexity 1 132 0 1 1436 351 65 0 0 chr5 111601769 111601815 -40935444 + (TCC)n Simple_repeat Simple_repeat 2 47 0 1 1436 773 130 61 0 chr5 111601909 111602024 -40935235 - B3 SINE B2 -86 130 9 1 1436 242 235 0 0 chr5 111602731 111602782 -40934477 + B1F1 SINE Alu 92 142 -7 1 1436 315 0 0 0 chr5 111602830 111602865 -40934394 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1436 960 150 0 26 chr5 111602921 111603072 -40934187 + B1_Mus1 SINE Alu 1 147 -1 1 1436 26 0 0 0 chr5 111603846 111603872 -40933387 + AT_rich Low_complexity Low_complexity 1 26 0 1 1436 525 250 53 18 chr5 111603872 111603986 -40933273 + B1_Mus1 SINE Alu 2 119 -29 1 1436 395 323 140 9 chr5 111606408 111606630 -40930629 - MLT1I LTR MaLR -1 410 160 1 1436 378 0 0 0 chr5 111607080 111607122 -40930137 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 1 1436 541 204 204 0 chr5 111607183 111607359 -40929900 - L1MC2 LINE L1 -112 6232 6021 1 1436 646 212 211 25 chr5 111607658 111607900 -40929359 + ORR1E LTR MaLR 68 354 -5 1 1436 200 360 70 0 chr5 111609361 111609461 -40927798 - MIRc SINE MIR -60 208 102 1 1436 186 292 16 110 chr5 111610028 111610155 -40927104 - MIRb SINE MIR -133 135 21 1 1436 328 266 48 60 chr5 111611092 111611176 -40926083 - ID2 SINE ID 0 83 1 1 1436 324 44 22 0 chr5 111612646 111612691 -40924568 + HAL1-3A_ME LINE L1 1966 2011 -847 1 1436 432 153 0 0 chr5 111612699 111612784 -40924475 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1436 869 144 0 22 chr5 111612796 111612980 -40924279 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1436 396 138 0 0 chr5 111614018 111614083 -40923176 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1436 453 354 116 40 chr5 111614473 111615023 -40922236 - L1MDa LINE L1 -2683 3854 3263 1 1436 223 377 0 0 chr5 111615036 111615105 -40922154 + ID4 SINE ID 15 83 0 1 1436 490 350 76 40 chr5 111615372 111615516 -40921743 - B4A SINE B4 -4 288 129 1 1436 5659 110 91 12 chr5 111615516 111616402 -40920857 - RMER17B LTR ERVK -2 956 1 1 1436 490 350 76 40 chr5 111616402 111616534 -40920725 - B4A SINE B4 -164 128 3 1 1436 297 0 0 0 chr5 111616552 111616585 -40920674 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1436 305 288 30 128 chr5 111616686 111616889 -40920370 + L1MEf LINE L1 1308 1490 -4910 1 1436 678 179 0 47 chr5 111616948 111617077 -40920182 - B1_Mur1 SINE Alu -10 139 17 1 1436 574 296 101 0 chr5 111617270 111617517 -40919742 + L1MEf LINE L1 1739 2010 -4405 1 1436 1294 174 14 5 chr5 111617761 111617969 -40919290 + B3 SINE B2 2 211 -5 1 1436 486 0 0 0 chr5 111618042 111618096 -40919163 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 1 1436 1077 65 0 48 chr5 111618391 111618536 -40918723 - B1_Mus2 SINE Alu -9 138 1 1 1436 504 0 0 0 chr5 111618627 111618683 -40918576 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1436 195 69 0 0 chr5 111618683 111618711 -40918548 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1436 468 300 48 48 chr5 111619061 111619292 -40917967 - L1MDa LINE L1 -5288 1345 1115 1 1436 741 203 119 0 chr5 111619601 111619778 -40917481 - MTD LTR MaLR 0 419 222 1 1436 495 45 0 0 chr5 111621465 111621531 -40915728 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1436 324 0 0 0 chr5 111621543 111621579 -40915680 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1436 485 233 58 29 chr5 111625777 111625914 -40911345 - RSINE1 SINE B4 -17 148 8 1 1436 720 293 100 9 chr5 111626129 111626536 -40910723 - L1MA8 LINE L1 -157 6155 5705 1 1436 235 401 81 49 chr5 111626826 111627049 -40910210 + L2 LINE L2 2662 2891 -528 1 1436 335 299 95 22 chr5 111627546 111627683 -40909576 - MLT1A0 LTR MaLR -5 360 214 1 1436 232 287 69 0 chr5 111628292 111628379 -40908880 - B3A SINE B2 -18 180 88 1 1436 687 292 91 25 chr5 111628608 111628882 -40908377 - B4A SINE B4 0 292 1 1 1436 21 0 0 0 chr5 111629498 111629519 -40907740 + GC_rich Low_complexity Low_complexity 1 21 0 1 1436 333 100 0 0 chr5 111629800 111629850 -40907409 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1436 721 203 180 6 chr5 111631767 111631950 -40905309 + URR1A DNA MER1_type 12 226 0 1 1436 1243 48 12 0 chr5 111634695 111634862 -40902397 + (GGA)n Simple_repeat Simple_repeat 1 169 0 1 1436 928 278 122 21 chr5 111635494 111635872 -40901387 - BGLII_B LTR ERVK -25 416 1 1 1436 648 221 71 0 chr5 111638432 111638572 -40898687 - RSINE1 SINE B4 -12 153 4 1 1436 625 252 174 35 chr5 111638844 111639039 -40898220 + L1MDa LINE L1 1756 1994 -4639 1 1436 1608 73 319 0 chr5 111639039 111639287 -40897972 + ORR1A2 LTR MaLR 1 327 0 1 1436 625 252 174 35 chr5 111639287 111639408 -40897851 + L1MDa LINE L1 1995 2116 -4517 1 1436 650 322 132 69 chr5 111639478 111640362 -40896897 + L1MDa LINE L1 3098 4037 -2500 1 1436 300 268 30 20 chr5 111640485 111640584 -40896675 - RSINE1 SINE B4 -61 104 5 1 1436 326 290 8 16 chr5 111640591 111640717 -40896542 + L1MDa LINE L1 4121 4245 -2292 1 1436 871 256 85 31 chr5 111640724 111640982 -40896277 - RMER1C Other Other -2 1340 1069 1 1436 256 317 12 0 chr5 111641078 111641160 -40896099 + L1M5 LINE L1 5479 5561 -618 1 1436 249 369 57 0 chr5 111642909 111643031 -40894228 - MIRb SINE MIR -74 194 66 1 1436 190 281 29 72 chr5 111643307 111643376 -40893883 - L2 LINE L2 -2096 1323 1258 1 1436 255 152 0 0 chr5 111643557 111643603 -40893656 + GA-rich Low_complexity Low_complexity 2 47 0 1 1436 343 283 168 5 chr5 111643658 111643843 -40893416 - MER33 DNA MER1_type -24 300 86 1 1436 23 33 0 0 chr5 111644453 111644483 -40892776 + AT_rich Low_complexity Low_complexity 1 30 0 1 1436 259 330 18 28 chr5 111644950 111645059 -40892200 + MIR SINE MIR 67 174 -88 1 1436 299 300 30 10 chr5 111645689 111645790 -40891469 - PB1D7 SINE Alu 0 120 18 1 1436 1109 133 0 46 chr5 111645799 111645996 -40891263 - B2_Mm2 SINE B2 -2 193 6 1 1436 511 194 64 18 chr5 111650431 111650541 -40886718 - PB1D10 SINE Alu -1 116 2 1 1436 1189 61 0 13 chr5 111655228 111655378 -40881881 - B1_Mus1 SINE Alu 0 148 1 1 1436 217 182 23 0 chr5 111656116 111656160 -40881099 - ID4_ SINE ID -37 46 2 2 1436 434 264 75 52 chr5 111659042 111659228 -40878031 + B3A SINE B2 1 213 -3 2 1436 189 238 168 12 chr5 111659392 111659493 -40877766 - MIRc SINE MIR -139 137 25 2 1436 460 305 50 28 chr5 111661121 111661370 -40875889 - MTEb LTR MaLR -30 349 13 2 1436 241 111 78 16 chr5 111662842 111662906 -40874353 + T-rich Low_complexity Low_complexity 2 69 0 2 1436 1169 82 0 0 chr5 111662938 111663085 -40874174 + B1_Mus1 SINE Alu 2 148 0 2 1436 378 0 0 0 chr5 111663199 111663241 -40874018 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1436 227 229 0 41 chr5 111663469 111663542 -40873717 + C-rich Low_complexity Low_complexity 6 75 0 2 1436 618 151 0 0 chr5 111663804 111663910 -40873349 + CT-rich Low_complexity Low_complexity 2 107 0 2 1436 506 246 73 53 chr5 111665209 111665415 -40871844 - RMER15 LTR ERVL -6 569 360 2 1436 732 153 28 28 chr5 111667350 111667491 -40869768 + B1_Mus1 SINE Alu 8 148 0 2 1436 308 280 75 106 chr5 111667352 111667512 -40869747 + B4 SINE B4 94 248 -44 2 1436 299 294 21 11 chr5 111668790 111668883 -40868376 - RMER15 LTR ERVL -155 420 327 2 1436 249 345 115 10 chr5 111669506 111669714 -40867545 + L1M3 LINE L1 3636 3865 -2275 2 179 945 240 168 29 chr5 111673100 111673409 -40863850 + ORR1E LTR MaLR 3 354 -5 2 1437 822 167 0 0 chr5 111673759 111673939 -40863320 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1437 308 24 24 0 chr5 111673950 111673991 -40863268 + (TC)n Simple_repeat Simple_repeat 1 42 0 2 1437 318 26 0 0 chr5 111673991 111674029 -40863230 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1437 556 309 12 12 chr5 111674915 111675037 -40862222 + RSINE1 SINE B4 2 125 -40 2 1437 848 72 0 58 chr5 111675037 111675228 -40862031 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1437 556 309 12 12 chr5 111675228 111675269 -40861990 + RSINE1 SINE B4 126 165 0 2 1437 184 72 17 67 chr5 111675288 111675348 -40861911 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1437 849 276 24 5 chr5 111675365 111675576 -40861683 + B3 SINE B2 2 216 0 2 1437 1442 73 17 0 chr5 111675617 111675794 -40861465 + B2_Mm2 SINE B2 1 180 -15 2 1437 225 0 0 0 chr5 111675794 111675819 -40861440 + (GGA)n Simple_repeat Simple_repeat 3 27 0 2 1437 25 0 0 0 chr5 111676325 111676350 -40860909 + GC_rich Low_complexity Low_complexity 1 25 0 2 1437 257 350 46 30 chr5 111676947 111677205 -40860054 + L1MDb LINE L1 817 1080 -5329 2 1437 5127 45 0 0 chr5 111677654 111678285 -40858974 - L1Md_A LINE L1 0 6582 5980 2 1437 2783 233 91 7 chr5 111678380 111679167 -40858092 - Lx7 LINE L1 0 7696 6782 2 1437 201 176 59 0 chr5 111679192 111679243 -40858016 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 1437 324 0 0 0 chr5 111679296 111679332 -40857927 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 2 1437 240 336 58 26 chr5 111679381 111679607 -40857652 + L1MDb LINE L1 3599 3831 -2575 2 1437 388 259 12 0 chr5 111679615 111679696 -40857563 + ID4 SINE ID 2 83 0 2 1437 1025 185 34 19 chr5 111679832 111680041 -40857218 + B3 SINE B2 4 215 -1 2 1437 286 191 65 0 chr5 111680152 111680229 -40857030 + B1_Mur1 SINE Alu 27 148 -1 2 1437 230 387 69 0 chr5 111680261 111680434 -40856825 + L1MDb LINE L1 5064 5248 -1158 2 1437 625 293 104 0 chr5 111682008 111682230 -40855029 + L1MA4 LINE L1 5685 5929 -371 2 1437 1130 247 161 0 chr5 111682269 111682605 -40854654 + MTD LTR MaLR 30 419 0 2 1437 213 152 98 33 chr5 111682605 111682664 -40854595 + B1_Mus1 SINE Alu 35 97 -51 2 1437 180 0 0 0 chr5 111683358 111683378 -40853881 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 2 1437 21 0 0 0 chr5 111686053 111686074 -40851185 + AT_rich Low_complexity Low_complexity 1 21 0 2 1437 504 0 0 0 chr5 111686222 111686278 -40850981 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1437 404 204 82 0 chr5 111688560 111688658 -40848601 + RCHARR1 DNA MER1_type 821 926 -48 2 1437 489 290 34 27 chr5 111688707 111688856 -40848403 + RSINE1 SINE B4 16 165 0 2 1437 318 272 0 42 chr5 111688860 111688979 -40848280 + (CA)n Simple_repeat Simple_repeat 1 114 0 2 1437 961 52 59 0 chr5 111689032 111689167 -40848092 - B2_Mm2 SINE B2 -2 193 51 2 1437 2043 149 58 80 chr5 111689209 111689609 -40847650 + ORR1B1 LTR MaLR 3 393 -1 2 1437 2748 73 70 5 chr5 111690297 111690668 -40846591 + MTA_Mm LTR MaLR 1 395 -1 2 1437 359 157 0 14 chr5 111691184 111691255 -40846004 + (CA)n Simple_repeat Simple_repeat 1 70 0 2 1437 243 144 10 72 chr5 111692225 111692322 -40844937 + GA-rich Low_complexity Low_complexity 2 92 0 2 1437 449 242 30 0 chr5 111694633 111694732 -40842527 - PB1D10 SINE Alu -7 110 9 2 1437 228 260 0 64 chr5 111695240 111695318 -40841941 + L2b LINE L2 3303 3375 0 2 1437 1325 152 0 0 chr5 111696984 111697195 -40840064 + URR1B DNA MER1_type 15 225 0 2 1437 342 266 20 78 chr5 111704298 111704400 -40832859 - PB1D7 SINE Alu -5 115 20 2 1437 180 0 0 0 chr5 111707101 111707121 -40830138 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1437 201 121 0 0 chr5 111710840 111710873 -40826386 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1437 214 226 38 0 chr5 111712385 111712438 -40824821 - PB1 SINE Alu -25 102 48 2 1437 28 0 0 0 chr5 111716139 111716167 -40821092 + AT_rich Low_complexity Low_complexity 1 28 0 2 1437 315 214 100 0 chr5 111716422 111716492 -40820767 + L1MEf LINE L1 1990 2066 -4134 2 1437 315 0 0 0 chr5 111716676 111716711 -40820548 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 2 1437 321 284 32 57 chr5 111717753 111717876 -40819383 + MER58D DNA MER1_type 267 386 0 2 1437 22 56 0 0 chr5 111718099 111718135 -40819124 + AT_rich Low_complexity Low_complexity 1 36 0 2 1437 249 272 6 77 chr5 111720143 111720217 -40817042 - MER2 DNA MER2_type -273 72 1 2 1437 504 195 118 52 chr5 111720244 111720379 -40816880 + B1_Mm SINE Alu 2 145 -2 2 1437 831 145 114 6 chr5 111720432 111720599 -40816660 + B2_Mm2 SINE B2 1 185 -10 2 1437 438 108 0 0 chr5 111721082 111721147 -40816112 + (GGGAGA)n Simple_repeat Simple_repeat 3 67 0 2 1437 1211 48 0 14 chr5 111721588 111721735 -40815524 + B1_Mus2 SINE Alu 2 146 -1 2 1437 627 177 14 97 chr5 111721926 111722070 -40815189 - B3A SINE B2 -48 150 19 2 1437 454 199 178 30 chr5 111722070 111722205 -40815054 + ID_B1 SINE B4 66 220 -4 2 1437 359 104 0 0 chr5 111722529 111722577 -40814682 - ID_B1 SINE B4 -2 222 175 2 1437 347 141 99 0 chr5 111722577 111722600 -40814659 - PB1D10 SINE Alu -2 115 38 2 1437 1480 34 78 0 chr5 111723080 111723240 -40814019 + B2_Mm1t SINE B2 1 160 -33 2 1437 207 0 0 0 chr5 111723240 111723263 -40813996 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 1437 1480 34 78 0 chr5 111723263 111723281 -40813978 + B2_Mm1t SINE B2 161 191 -2 2 1437 979 228 19 19 chr5 111723408 111723618 -40813641 - B3 SINE B2 -6 210 1 2 1437 2352 178 142 5 chr5 111723789 111724344 -40812915 + L1_Mur3 LINE L1 1631 2261 -3619 2 1437 696 281 164 43 chr5 111724346 111724829 -40812430 + L1_Rod LINE L1 4672 5212 -635 2 1437 2899 85 72 0 chr5 111724837 111725365 -40811894 - Lx4B LINE L1 -1041 6017 5444 2 1437 5898 128 9 8 chr5 111725380 111726254 -40811005 + Lx4B LINE L1 6015 6889 -169 2 1437 300 265 24 0 chr5 111726317 111726400 -40810859 + B4A SINE B4 1 85 -207 2 1437 259 330 24 82 chr5 111726400 111726525 -40810734 + B3A SINE B2 1 196 -2 2 1437 318 324 17 12 chr5 111726530 111726702 -40810557 + (CATA)n Simple_repeat Simple_repeat 4 176 0 2 1437 198 326 96 22 chr5 111727028 111727163 -40810096 + L2 LINE L2 2728 2872 -547 2 1437 253 268 14 0 chr5 111727378 111727449 -40809810 + Lx7 LINE L1 7237 7308 -388 2 1437 1557 183 151 3 chr5 111727655 111727671 -40809588 - MTD LTR MaLR -17 402 387 2 1437 297 0 0 0 chr5 111727671 111727704 -40809555 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1437 1557 183 151 3 chr5 111727704 111728037 -40809222 - MTD LTR MaLR -33 386 3 2 1437 294 253 65 21 chr5 111728323 111728416 -40808843 - B1F SINE Alu -1 148 52 2 1437 568 140 29 39 chr5 111728445 111728549 -40808710 - RMER4A LTR ERVK 0 466 364 2 1437 2414 131 26 152 chr5 111728567 111729100 -40808159 - RMER4A LTR ERVK 0 466 1 2 1437 1308 197 109 109 chr5 111729100 111729267 -40807992 + ORR1C2 LTR MaLR 26 186 -198 2 1437 693 93 0 0 chr5 111729267 111729374 -40807885 + (TC)n Simple_repeat Simple_repeat 2 108 0 2 1437 1308 197 109 109 chr5 111729374 111729565 -40807694 + ORR1C2 LTR MaLR 187 384 0 2 1437 394 300 88 8 chr5 111729639 111729901 -40807358 + L1MA8 LINE L1 5043 5325 -818 2 1437 755 319 58 22 chr5 111730075 111730386 -40806873 + L1MA8 LINE L1 5603 5924 -367 2 1437 553 331 105 0 chr5 111730449 111730630 -40806629 - Tigger7 DNA MER2_type -2289 202 3 2 1437 1469 214 137 116 chr5 111730710 111731229 -40806030 + MT2A LTR ERVL 1 530 -3 2 1437 528 220 152 28 chr5 111731421 111731566 -40805693 - RSINE1 SINE B4 -1 164 2 2 1437 306 0 0 0 chr5 111731619 111731653 -40805606 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1437 355 286 98 82 chr5 111731654 111731734 -40805525 - B4 SINE B4 -21 271 86 2 1437 436 233 97 0 chr5 111731734 111731837 -40805422 - B1_Mur1 SINE Alu -36 113 1 2 1437 740 276 17 0 chr5 111731837 111732000 -40805259 - B4A SINE B4 -125 167 2 2 1437 533 233 106 33 chr5 111732026 111732177 -40805082 - RSINE1 SINE B4 0 165 4 2 1437 346 335 45 19 chr5 111734188 111734343 -40802916 - Lx8 LINE L1 -253 7220 7062 2 1437 1797 163 54 43 chr5 111734355 111734462 -40802797 + ORR1C2 LTR MaLR 1 109 -275 2 1437 1497 39 61 0 chr5 111734462 111734642 -40802617 + B2_Mm1a SINE B2 2 192 -1 2 1437 1797 163 54 43 chr5 111734642 111734886 -40802373 + ORR1C2 LTR MaLR 110 356 -28 2 1437 933 253 142 7 chr5 111734884 111735159 -40802100 + MTD LTR MaLR 104 415 -4 2 1437 240 299 154 0 chr5 111735166 111735283 -40801976 - Lx8 LINE L1 -1305 6168 6034 2 1437 432 312 18 0 chr5 111735517 111735629 -40801630 + Lx8 LINE L1 5617 5730 -1743 2 1437 263 248 210 25 chr5 111735698 111735848 -40801411 - ORR1E LTR MaLR -1 358 180 3 1437 546 174 70 55 chr5 111735848 111736149 -40801110 + ORR1B2 LTR MaLR 1 382 -2 3 1437 967 92 42 0 chr5 111736731 111736873 -40800386 + B1_Mus1 SINE Alu 1 148 0 3 1437 209 265 69 0 chr5 111736952 111737054 -40800205 + (TCTCTG)n Simple_repeat Simple_repeat 2 110 0 3 1437 2319 167 93 16 chr5 111737578 111738021 -40799238 + MT2A LTR ERVL 5 481 -52 3 1437 1144 115 17 0 chr5 111738021 111738195 -40799064 + B2_Mm1t SINE B2 1 177 -16 3 1437 375 109 0 18 chr5 111738229 111738285 -40798974 + B2_Mm2 SINE B2 47 101 -94 3 1437 225 0 0 0 chr5 111738305 111738330 -40798929 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1437 405 0 0 0 chr5 111738330 111738374 -40798885 + (GA)n Simple_repeat Simple_repeat 2 46 0 3 1437 381 78 0 0 chr5 111738382 111738433 -40798826 + MT2A LTR ERVL 412 462 -71 3 1437 345 215 0 0 chr5 111738442 111738535 -40798724 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 1437 450 288 42 8 chr5 111738535 111738654 -40798605 + RSINE1 SINE B4 43 165 0 3 1437 711 185 0 88 chr5 111738711 111738859 -40798400 + B1_Mur1 SINE Alu 15 149 0 3 1437 341 59 39 0 chr5 111738863 111738914 -40798345 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 3 1437 569 153 165 25 chr5 111738949 111739070 -40798189 + B1_Mm SINE Alu 10 147 0 3 1437 377 333 85 53 chr5 111739588 111739617 -40797642 - CYRA11_Mm Unknown Y-chromosome -205 412 318 3 1437 1119 168 46 0 chr5 111739617 111739814 -40797445 + URR1B DNA MER1_type 1 206 -19 3 1437 377 333 85 53 chr5 111739814 111739870 -40797389 - CYRA11_Mm Unknown Y-chromosome -205 317 122 3 1437 320 348 32 63 chr5 111739946 111740072 -40797187 + RSINE1 SINE B4 42 163 -2 3 1437 808 169 7 0 chr5 111740105 111740241 -40797018 + B1_Mur4 SINE Alu 2 138 -12 3 1437 405 39 0 0 chr5 111740242 111740293 -40796966 + (TC)n Simple_repeat Simple_repeat 1 51 0 3 1437 183 80 0 0 chr5 111740293 111740318 -40796941 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 1437 255 103 0 0 chr5 111740542 111740581 -40796678 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1437 1121 50 57 0 chr5 111740581 111740721 -40796538 - B1_Mus1 SINE Alu 0 148 1 3 1437 233 319 14 0 chr5 111740997 111741069 -40796190 + RLTR19C LTR ERVK 25 97 -409 3 1437 2012 158 71 6 chr5 111741452 111741803 -40795456 + ORR1C1 LTR MaLR 5 378 0 3 1437 624 223 36 7 chr5 111742025 111742165 -40795094 - MTD LTR MaLR 0 419 276 3 1437 641 217 28 14 chr5 111742165 111742310 -40794949 - MTD-int LTR MaLR -1111 147 1 3 1437 337 140 35 0 chr5 111742310 111742367 -40794892 - MTD LTR MaLR 0 419 361 3 1437 962 227 138 52 chr5 111742365 111742702 -40794557 - ORR1D1 LTR MaLR -6 373 1 3 1437 507 275 15 8 chr5 111742702 111742822 -40794437 - MTD LTR MaLR -56 363 243 3 1437 1110 190 68 107 chr5 111742822 111743187 -40794072 + RMER19C LTR ERVK 1 336 -401 3 1437 2411 64 10 3 chr5 111743193 111743506 -40793753 + ORR1A2 LTR MaLR 5 319 -8 3 1437 1449 225 6 75 chr5 111743505 111743851 -40793408 + RMER19C LTR ERVK 288 609 -2 3 1437 1164 224 34 45 chr5 111743887 111744153 -40793106 - MTD LTR MaLR -156 263 1 3 1437 350 304 64 43 chr5 111744153 111744282 -40792977 + RSINE1 SINE B4 31 162 -3 3 1437 844 257 5 37 chr5 111744351 111744569 -40792690 + B3 SINE B2 2 212 -4 3 1437 295 188 71 14 chr5 111744701 111744771 -40792488 + PB1D10 SINE Alu 30 103 -14 3 1437 252 0 0 0 chr5 111744773 111744801 -40792458 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 3 1437 1347 235 104 14 chr5 111745248 111745671 -40791588 + Lx9 LINE L1 896 1356 -6252 3 1437 429 246 173 0 chr5 111745677 111745787 -40791472 + RSINE1 SINE B4 6 134 -31 3 1437 321 68 0 0 chr5 111745820 111745864 -40791395 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 3 1437 371 194 10 0 chr5 111745881 111745984 -40791275 + GA-rich Low_complexity Low_complexity 2 105 0 3 1437 840 185 136 67 chr5 111745984 111746360 -40790899 + Lx9 LINE L1 1407 1808 -4039 3 1437 860 90 0 8 chr5 111746367 111746490 -40790769 + B1_Mus1 SINE Alu 2 123 -25 3 1437 622 306 106 55 chr5 111746564 111747037 -40790222 - RLTR11A2 LTR ERVK -24 503 7 3 1437 2830 139 76 18 chr5 111747037 111747290 -40789969 + RLTR11A LTR ERVK 1 287 -241 3 1437 3042 61 12 15 chr5 111747290 111747691 -40789568 + MTB LTR MaLR 1 400 0 3 1437 2830 139 76 18 chr5 111747691 111747936 -40789323 + RLTR11A LTR ERVK 288 528 0 3 1437 1332 103 11 0 chr5 111748398 111748583 -40788676 + B2_Mm1t SINE B2 2 188 -5 3 1437 477 225 0 90 chr5 111749038 111749160 -40788099 + MurERV4-int LTR ERVK 4543 4653 -607 3 1437 229 250 75 100 chr5 111749165 111749285 -40787974 - RLTR22_Mus LTR ERVK -1655 153 37 3 1437 1128 145 36 10 chr5 111749266 111749461 -40787798 - RLTR12B LTR ERVK -328 200 1 3 1437 4345 223 97 101 chr5 111749461 111749613 -40787646 + Lx9 LINE L1 1804 1956 -3891 3 1437 2124 77 84 62 chr5 111749613 111749933 -40787326 - ORR1A2 LTR MaLR 0 327 1 3 1437 4345 223 97 101 chr5 111749933 111750909 -40786350 + Lx9 LINE L1 1957 3026 -2821 3 1437 1279 102 11 0 chr5 111750909 111751085 -40786174 + B2_Mm1t SINE B2 2 179 -14 3 1437 4345 223 97 101 chr5 111751085 111751117 -40786142 + Lx9 LINE L1 3027 3057 -2790 3 1437 344 181 17 13 chr5 111751117 111751204 -40786055 + B2_Mm2 SINE B2 47 134 -82 3 1437 4345 223 97 101 chr5 111751204 111751697 -40785562 + Lx9 LINE L1 3058 3539 -2308 3 1437 347 143 32 0 chr5 111751698 111751761 -40785498 + Lx9 LINE L1 3786 3850 -1997 3 1437 1981 268 107 48 chr5 111751764 111753216 -40784043 + Lx9 LINE L1 5021 6755 -889 3 1437 240 111 0 0 chr5 111753224 111753260 -40783999 + MT2B LTR ERVL 3 38 -563 3 1437 8489 163 35 10 chr5 111753260 111754701 -40782558 + MERVL_2A-int LTR ERVL 3136 4612 -1149 3 1437 652 186 19 26 chr5 111754703 111754846 -40782413 + ORR1A4 LTR MaLR 208 348 -11 3 1437 800 187 183 20 chr5 111754875 111755077 -40782182 + MERVL_2A-int LTR ERVL 4856 5090 -671 3 1437 1569 141 52 59 chr5 111755095 111755213 -40782046 + MERVL_2A-int LTR ERVL 5440 5563 -198 3 1437 1513 153 261 28 chr5 111755213 111755569 -40781690 + RMER10A LTR ERVL 3 441 -1 3 1437 1569 141 52 59 chr5 111755569 111755774 -40781485 + MERVL_2A-int LTR ERVL 5564 5761 0 3 1437 292 233 0 0 chr5 111755778 111755838 -40781421 + MT2A LTR ERVL 5 64 -469 3 1437 1580 249 75 31 chr5 111755863 111756315 -40780944 + RMER19C LTR ERVK 126 597 -14 3 1437 795 215 50 19 chr5 111756310 111756557 -40780702 + MT2A LTR ERVL 48 463 -138 3 1437 1631 239 69 147 chr5 111756596 111756924 -40780335 + Lx9 LINE L1 6768 7080 -564 3 1437 1123 78 0 0 chr5 111756924 111757066 -40780193 - B1_Mus1 SINE Alu -2 146 5 3 1437 1631 239 69 147 chr5 111757066 111757526 -40779733 + Lx9 LINE L1 7081 7491 -153 3 1437 705 140 35 0 chr5 111757526 111757640 -40779619 - PB1D9 SINE Alu -1 119 2 3 1437 1631 239 69 147 chr5 111757640 111757797 -40779462 + Lx9 LINE L1 7492 7640 -4 3 1437 318 268 49 93 chr5 111757967 111758035 -40779224 - ID4_ SINE ID -18 134 55 3 1437 996 88 0 114 chr5 111758035 111758201 -40779058 + B1_Mus2 SINE Alu 1 147 0 3 1437 318 244 0 118 chr5 111758201 111758265 -40778994 - ID4_ SINE ID -29 54 1 3 1437 969 146 210 17 chr5 111758469 111758650 -40778609 + B3 SINE B2 1 216 0 3 1437 594 209 9 0 chr5 111759159 111759274 -40777985 + B3 SINE B2 6 121 -95 3 1437 239 239 69 14 chr5 111760133 111760205 -40777054 + MIRc SINE MIR 123 198 -70 3 1437 648 214 75 70 chr5 111760856 111761057 -40776202 - B3 SINE B2 -13 203 2 3 1437 318 248 212 0 chr5 111761157 111761270 -40775989 - RSINE1 SINE B4 -25 140 4 3 1437 233 222 169 31 chr5 111761690 111761755 -40775504 - B3 SINE B2 -141 75 2 3 1437 186 125 0 0 chr5 111762022 111762035 -40775224 + (T)n Simple_repeat Simple_repeat 1 13 0 3 1437 1168 55 14 0 chr5 111762035 111762181 -40775078 - B1_Mus1 SINE Alu 0 148 1 3 1437 186 125 0 0 chr5 111762181 111762199 -40775060 + (T)n Simple_repeat Simple_repeat 1 18 0 3 1437 546 162 71 9 chr5 111762213 111762325 -40774934 + PB1D9 SINE Alu 2 120 0 3 1437 699 188 78 0 chr5 111762819 111762947 -40774312 - B1_Mus2 SINE Alu 0 147 10 3 1437 317 278 0 126 chr5 111762853 111762964 -40774295 - MT2B LTR ERVL -343 258 162 3 1437 2884 71 33 12 chr5 111763592 111763991 -40773268 - MTB_Mm LTR MaLR 0 407 1 3 1437 218 233 63 48 chr5 111764015 111764078 -40773181 + B3A SINE B2 2 65 -133 3 1437 267 316 0 6 chr5 111764607 111764713 -40772546 - ID4_ SINE ID -40 112 9 3 1437 936 105 27 27 chr5 111765794 111765941 -40771318 - B1_Mus1 SINE Alu 0 148 2 3 1437 1101 90 0 0 chr5 111766136 111766280 -40770979 - B1_Mus1 SINE Alu -1 147 4 3 1437 184 149 21 21 chr5 111766383 111766431 -40770828 + GA-rich Low_complexity Low_complexity 1 48 0 3 1437 545 219 89 111 chr5 111767658 111767838 -40769421 + B3 SINE B2 5 180 -36 3 1437 432 0 0 0 chr5 111767907 111767955 -40769304 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 3 1437 382 324 240 6 chr5 111768001 111768176 -40769083 - B4 SINE B4 -75 217 2 3 1437 379 250 227 39 chr5 111768920 111769074 -40768185 - B3A SINE B2 -15 183 1 3 1437 1393 223 79 46 chr5 111769255 111769650 -40767609 - MTD LTR MaLR -13 406 7 3 1437 229 252 56 49 chr5 111770860 111771002 -40766257 - L1M4 LINE L1 -737 5441 5299 3 1437 267 278 54 31 chr5 111771111 111771241 -40766018 - L1M4 LINE L1 -891 5255 5123 3 1437 546 240 80 7 chr5 111771744 111771895 -40765364 + B3A SINE B2 3 164 -34 3 1437 469 256 40 8 chr5 111772617 111772743 -40764516 + B4A SINE B4 1 130 -162 3 1437 333 0 0 0 chr5 111773074 111773111 -40764148 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1437 214 267 0 48 chr5 111773253 111773316 -40763943 - RSINE1 SINE B4 -104 61 2 3 1437 406 202 162 9 chr5 111773316 111773419 -40763840 - B4 SINE B4 -65 227 109 3 1437 1011 151 40 66 chr5 111773498 111773696 -40763563 + B2_Mm2 SINE B2 1 193 -2 3 1437 711 182 32 0 chr5 111774536 111774662 -40762597 - B1_Mus1 SINE Alu -7 141 12 3 1437 238 221 59 162 chr5 111774642 111774680 -40762579 - MT2B LTR ERVL -314 287 262 3 1437 234 0 0 0 chr5 111774680 111774706 -40762553 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 3 1437 545 143 153 0 chr5 111774715 111774813 -40762446 - B1_Mur1 SINE Alu -36 113 1 3 1437 238 221 59 162 chr5 111774816 111774889 -40762370 - MT2B LTR ERVL -340 261 89 3 1437 261 215 172 0 chr5 111774835 111774928 -40762331 - PB1D7 SINE Alu -11 109 1 3 1437 747 279 16 0 chr5 111776459 111776642 -40760617 + B3 SINE B2 1 186 -30 3 1437 186 103 0 0 chr5 111776642 111776671 -40760588 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1437 736 115 39 5 chr5 111777907 111778031 -40759228 - B1_Mus1 SINE Alu -9 140 15 3 1437 581 273 36 24 chr5 111778017 111778182 -40759077 - B3A SINE B2 -31 167 1 3 1437 501 218 71 50 chr5 111779026 111779166 -40758093 - RSINE1 SINE B4 -22 143 1 3 1437 34421 57 15 6 chr5 111779168 111785186 -40752073 - L1Md_F2 LINE L1 -121 6461 392 3 1437 228 264 110 14 chr5 111786354 111786427 -40750832 + MIRb SINE MIR 94 173 -95 3 1437 277 314 63 42 chr5 111786574 111786717 -40750542 - B2_Mm2 SINE B2 -14 181 36 4 1437 415 319 123 37 chr5 111786829 111787204 -40750055 - L1MB5 LINE L1 0 6174 5768 4 1437 534 245 64 70 chr5 111787348 111787519 -40749740 + B3A SINE B2 28 197 -1 4 1437 531 319 57 78 chr5 111789347 111789592 -40747667 - B4A SINE B4 -22 270 31 4 1437 183 239 112 64 chr5 111789613 111789738 -40747521 + L3 LINE CR1 2350 2480 -2009 4 1437 269 125 0 18 chr5 111790479 111790536 -40746723 + (TTG)n Simple_repeat Simple_repeat 2 57 0 4 1437 210 281 0 118 chr5 111790553 111790646 -40746613 + PB1 SINE Alu 42 123 -4 4 1437 592 258 23 114 chr5 111791531 111791706 -40745553 + RSINE1 SINE B4 7 165 0 4 1437 219 225 0 0 chr5 111791708 111791748 -40745511 + (CACG)n Simple_repeat Simple_repeat 3 42 0 4 1437 23 0 0 0 chr5 111791755 111791778 -40745481 + AT_rich Low_complexity Low_complexity 1 23 0 4 1437 690 182 19 43 chr5 111792498 111792764 -40744495 - RMER10A LTR ERVL -2 440 3 4 1437 355 223 115 21 chr5 111793186 111793282 -40743977 - PB1D10 SINE Alu -12 105 1 4 1437 383 236 40 9 chr5 111793967 111794069 -40743190 - B1_Mur1 SINE Alu -5 144 13 4 1437 309 213 0 5 chr5 111794617 111794682 -40742577 - B2_Mm2 SINE B2 -107 109 47 4 1437 1297 91 11 0 chr5 111794695 111794870 -40742389 - B2_Mm1t SINE B2 -14 179 3 4 1437 312 27 0 0 chr5 111794906 111794943 -40742316 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1437 369 326 22 29 chr5 111794974 111795110 -40742149 - RSINE1 SINE B4 -28 137 3 4 1437 340 277 88 48 chr5 111795120 111795245 -40742014 - B1_Mm SINE Alu -4 143 14 4 1437 1625 219 55 3 chr5 111795819 111796203 -40741056 - MamRep434 DNA TcMar -21 405 2 4 1437 780 212 81 23 chr5 111798448 111798622 -40738637 + B3 SINE B2 27 210 -6 4 1437 254 303 121 0 chr5 111799145 111799244 -40738015 + MER104 DNA Tc2 29 139 -42 4 1437 192 77 0 0 chr5 111799615 111799641 -40737618 + (TCTTG)n Simple_repeat Simple_repeat 3 28 0 4 1437 209 83 28 0 chr5 111800231 111800267 -40736992 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1437 334 250 284 0 chr5 111801258 111801346 -40735913 + PB1D9 SINE Alu 2 114 -6 4 1437 453 308 8 8 chr5 111801938 111802072 -40735187 - B1F SINE Alu -4 145 12 4 1437 264 273 61 0 chr5 111802631 111802697 -40734562 - ID2 SINE ID -9 74 5 4 1437 298 299 13 0 chr5 111803127 111803204 -40734055 + MIRb SINE MIR 118 195 -73 4 1438 206 79 26 26 chr5 111806407 111806446 -40730813 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 4 1438 965 229 80 0 chr5 111806453 111806641 -40730618 + B3 SINE B2 1 203 -13 4 1438 580 257 76 0 chr5 111806661 111806805 -40730454 - RSINE1 SINE B4 -8 157 3 4 1438 22 0 0 0 chr5 111807090 111807112 -40730147 + AT_rich Low_complexity Low_complexity 1 22 0 4 1438 194 57 0 54 chr5 111809515 111809552 -40727707 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1438 959 216 50 15 chr5 111809556 111809758 -40727501 - B3 SINE B2 -5 211 3 4 1438 853 182 71 0 chr5 111810170 111810340 -40726919 + B3 SINE B2 1 182 -34 4 1438 189 0 0 0 chr5 111811206 111811227 -40726032 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 4 1438 884 123 64 21 chr5 111811283 111811424 -40725835 + B1_Mus1 SINE Alu 1 147 -1 4 1438 225 205 18 9 chr5 111811429 111811542 -40725717 + (TA)n Simple_repeat Simple_repeat 1 114 0 4 1438 400 221 7 7 chr5 111811560 111811710 -40725549 + (TA)n Simple_repeat Simple_repeat 1 150 0 4 1438 28 0 0 0 chr5 111811719 111811747 -40725512 + AT_rich Low_complexity Low_complexity 1 28 0 4 1438 615 184 39 31 chr5 111811747 111811876 -40725383 - B1_Mm SINE Alu -8 139 10 4 1438 180 0 0 0 chr5 111812443 111812463 -40724796 + (CTAAG)n Simple_repeat Simple_repeat 3 22 0 4 1438 184 361 0 49 chr5 111814118 111814220 -40723039 - L2 LINE L2 -3305 114 18 4 1438 228 170 0 0 chr5 111815636 111815689 -40721570 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1438 345 343 0 38 chr5 111815690 111815875 -40721384 + (TATG)n Simple_repeat Simple_repeat 3 180 0 4 1438 428 77 0 15 chr5 111816755 111816821 -40720438 + (TCC)n Simple_repeat Simple_repeat 2 66 0 4 1438 1693 36 0 0 chr5 111817654 111817847 -40719412 - B2_Mm1a SINE B2 0 193 1 4 1438 361 261 120 48 chr5 111819729 111819854 -40717405 + B1_Mur1 SINE Alu 3 136 -13 4 1438 1131 111 66 6 chr5 111820955 111820970 -40716289 - B2_Mm1t SINE B2 0 193 179 4 1438 213 39 0 0 chr5 111820970 111820996 -40716263 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1438 1131 111 66 6 chr5 111820996 111821162 -40716097 - B2_Mm1t SINE B2 -15 178 1 4 1438 809 29 10 0 chr5 111821413 111821517 -40715742 + (TG)n Simple_repeat Simple_repeat 1 105 0 4 1438 414 155 286 19 chr5 111821519 111821624 -40715635 - B1_Mus1 SINE Alu -8 140 8 4 1438 329 275 37 0 chr5 111822630 111822739 -40714520 - MER81 DNA AcHobo 0 114 2 4 1438 652 223 72 0 chr5 111824582 111824721 -40712538 + B1_Mur1 SINE Alu 1 149 0 4 1438 198 0 0 0 chr5 111824729 111824751 -40712508 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1438 252 0 0 0 chr5 111824753 111824781 -40712478 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1438 293 217 95 68 chr5 111826754 111826828 -40710431 + B3A SINE B2 44 119 -79 4 1438 23 33 0 0 chr5 111826856 111826886 -40710373 + AT_rich Low_complexity Low_complexity 1 30 0 4 1438 225 330 59 0 chr5 111828490 111828608 -40708651 + LTR16C LTR ERVL 178 302 -187 4 1438 257 303 53 0 chr5 111829379 111829455 -40707804 - AluG_3 SINE Alu -93 218 139 4 1438 751 267 30 10 chr5 111830042 111830239 -40707020 - B3 SINE B2 -14 202 2 4 1438 483 252 10 0 chr5 111830674 111830777 -40706482 + PB1D10 SINE Alu 14 117 0 4 1438 314 183 40 53 chr5 111831612 111831687 -40705572 - HAL1-3A_ME LINE L1 -840 2018 1945 4 1438 259 292 90 0 chr5 111832584 111832673 -40704586 + L2b LINE L2 3271 3367 -8 4 1438 746 289 95 95 chr5 111832700 111832890 -40704369 + MLT1D LTR MaLR 1 203 -302 4 1438 397 248 24 81 chr5 111832890 111833013 -40704246 + PB1D10 SINE Alu 1 116 -1 4 1438 623 276 125 125 chr5 111833013 111833327 -40703932 + MLT1D LTR MaLR 178 505 0 4 1438 361 319 144 39 chr5 111833907 111834240 -40703019 - L1MB5 LINE L1 -145 6029 5662 4 1438 1043 86 50 0 chr5 111835345 111835485 -40701774 + B1_Mus1 SINE Alu 2 148 0 4 1438 619 275 0 63 chr5 111835505 111835664 -40701595 - RSINE1 SINE B4 -15 150 2 4 1438 433 337 27 22 chr5 111836010 111836195 -40701064 - Charlie2a DNA MER1_type -1917 944 759 4 1438 354 45 0 0 chr5 111836336 111836380 -40700879 + (TTCTC)n Simple_repeat Simple_repeat 2 45 0 4 1438 297 0 0 0 chr5 111836380 111836413 -40700846 + (TTTC)n Simple_repeat Simple_repeat 3 35 0 4 1438 987 74 0 15 chr5 111836413 111836550 -40700709 - B1_Mus1 SINE Alu 0 148 14 4 1438 400 280 0 92 chr5 111836450 111836580 -40700679 - MT2B LTR ERVL -337 264 147 4 1438 210 246 17 17 chr5 111836535 111836593 -40700666 + ID SINE ID 26 83 -141 4 1438 402 297 58 0 chr5 111836593 111836731 -40700528 + B1F SINE Alu 4 149 0 4 1438 248 339 200 0 chr5 111838189 111838319 -40698940 - MIRb SINE MIR -8 260 105 4 1438 229 250 35 70 chr5 111838550 111838636 -40698623 - BC1_Mm scRNA scRNA -69 83 1 4 1438 973 85 25 14 chr5 111839385 111839669 -40697590 + (TG)n Simple_repeat Simple_repeat 1 287 0 4 1438 419 295 62 8 chr5 111840096 111840226 -40697033 + B1F2 SINE Alu 13 149 0 4 1438 341 317 91 28 chr5 111840738 111840881 -40696378 + MIRm SINE MIR 6 157 -119 4 1438 225 176 29 29 chr5 111841039 111841109 -40696150 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 4 1438 262 310 28 22 chr5 111841110 111841288 -40695971 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 4 1438 216 0 0 0 chr5 111841936 111841960 -40695299 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1438 239 256 98 22 chr5 111842516 111842608 -40694651 - MIRb SINE MIR -118 150 52 4 1438 387 0 0 0 chr5 111843677 111843720 -40693539 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1438 283 204 11 11 chr5 111844665 111844754 -40692505 + (TG)n Simple_repeat Simple_repeat 1 89 0 4 1438 22 56 0 0 chr5 111846354 111846390 -40690869 + GC_rich Low_complexity Low_complexity 1 36 0 4 1438 186 118 0 0 chr5 111847144 111847178 -40690081 + (C)n Simple_repeat Simple_repeat 1 34 0 4 1438 216 280 0 0 chr5 111848172 111848247 -40689012 + (CCG)n Simple_repeat Simple_repeat 1 75 0 4 1438 555 90 0 0 chr5 111848717 111848795 -40688464 + (CAG)n Simple_repeat Simple_repeat 3 80 0 4 1438 201 102 0 75 chr5 111851762 111851815 -40685444 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 4 1438 38 0 0 0 chr5 111854798 111854836 -40682423 + AT_rich Low_complexity Low_complexity 1 38 0 4 1438 315 0 0 0 chr5 111858092 111858127 -40679132 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1438 522 0 0 0 chr5 111858396 111858454 -40678805 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1438 744 71 0 0 chr5 111859347 111859446 -40677813 + (TCTCCC)n Simple_repeat Simple_repeat 4 102 0 4 1438 210 298 0 0 chr5 111859764 111859811 -40677448 + (CACG)n Simple_repeat Simple_repeat 4 50 0 4 1438 224 267 50 0 chr5 111862555 111862615 -40674644 - MIR SINE MIR -120 142 80 4 1438 421 211 183 23 chr5 111863014 111863145 -40674114 + MIR SINE MIR 23 174 -88 4 1438 246 330 41 10 chr5 111863844 111863942 -40673317 + MIRm SINE MIR 86 186 -90 4 1438 475 324 26 26 chr5 111864075 111864212 -40673047 + MER20 DNA MER1_type 28 166 -53 4 1438 186 43 0 0 chr5 111864212 111864235 -40673024 + (CAA)n Simple_repeat Simple_repeat 3 25 0 5 1438 475 324 26 26 chr5 111864235 111864287 -40672972 + MER20 DNA MER1_type 167 216 -3 4 1438 266 277 67 38 chr5 111865165 111865270 -40671989 - MIRc SINE MIR -119 149 42 5 1438 749 270 13 0 chr5 111866080 111866239 -40671020 - RSINE1 SINE B4 -2 163 3 5 1438 467 286 32 97 chr5 111866777 111866816 -40670443 - CYRA11_Mm Unknown Y-chromosome -195 422 191 5 1438 1301 131 0 14 chr5 111866816 111867025 -40670234 + URR1A DNA MER1_type 1 206 -20 5 1438 190 314 48 12 chr5 111868345 111868450 -40668809 + MIR SINE MIR 76 184 -92 5 1438 198 167 0 0 chr5 111869124 111869160 -40668099 + (ATG)n Simple_repeat Simple_repeat 3 38 0 5 1438 245 203 0 39 chr5 111869200 111869277 -40667982 + (CACCAT)n Simple_repeat Simple_repeat 4 77 0 5 1438 218 206 191 0 chr5 111869375 111869438 -40667821 - B1F SINE Alu -31 118 44 5 1438 216 135 0 0 chr5 111871074 111871111 -40666148 + (GGGAGA)n Simple_repeat Simple_repeat 5 41 0 5 1438 210 284 44 33 chr5 111872040 111872131 -40665128 + MIR SINE MIR 3 94 -168 5 1438 541 250 244 0 chr5 111872160 111872336 -40664923 + ID_B1 SINE B4 1 219 -5 5 1438 401 122 0 159 chr5 111874013 111874227 -40663032 + (CACAG)n Simple_repeat Simple_repeat 1 180 0 5 1438 412 315 128 30 chr5 111874529 111874794 -40662465 + B4A SINE B4 2 292 0 5 1438 677 117 34 34 chr5 111874874 111875051 -40662208 + (CA)n Simple_repeat Simple_repeat 2 178 0 5 1438 185 148 23 58 chr5 111875092 111875178 -40662081 + (CATATA)n Simple_repeat Simple_repeat 6 88 0 5 1438 594 138 37 18 chr5 111875216 111875379 -40661880 + (CA)n Simple_repeat Simple_repeat 1 166 0 5 1438 205 333 68 39 chr5 111876269 111876372 -40660887 + MIR SINE MIR 39 144 -118 5 1438 1055 321 59 0 chr5 111876704 111877043 -40660216 - MTE2b LTR MaLR 0 379 21 5 1438 224 284 95 0 chr5 111877042 111877137 -40660122 + ID_B1 SINE B4 69 172 -52 5 1438 304 247 90 0 chr5 111877059 111877148 -40660111 + PB1D10 SINE Alu 6 102 -15 5 1438 984 288 62 4 chr5 111877449 111877724 -40659535 + B4A SINE B4 2 292 0 5 1438 233 261 0 0 chr5 111877725 111877790 -40659469 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1438 225 211 0 0 chr5 111877804 111877856 -40659403 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1438 286 315 17 104 chr5 111877869 111878110 -40659149 - RLTR21 LTR ERVK -266 1306 1087 5 1438 193 191 0 60 chr5 111879377 111879444 -40657815 + GA-rich Low_complexity Low_complexity 3 65 0 5 1438 445 154 0 90 chr5 111879455 111879798 -40657461 + GA-rich Low_complexity Low_complexity 1 312 0 5 1438 309 284 55 0 chr5 111880993 111881102 -40656157 + MIRb SINE MIR 71 185 -83 5 1438 387 0 0 0 chr5 111881375 111881418 -40655841 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1438 240 324 0 0 chr5 111882854 111882928 -40654331 + MIR3 SINE MIR 81 154 -54 5 1438 225 295 100 25 chr5 111883112 111883192 -40654067 + MIR SINE MIR 61 146 -62 5 1438 369 109 0 0 chr5 111883880 111883935 -40653324 + (T)n Simple_repeat Simple_repeat 1 55 0 5 1438 389 342 19 0 chr5 111886096 111886309 -40650950 + (TG)n Simple_repeat Simple_repeat 1 217 0 5 1438 190 337 21 73 chr5 111886972 111887068 -40650191 + MIRb SINE MIR 96 186 -82 5 1438 964 237 116 7 chr5 111888148 111888437 -40648822 + MTD LTR MaLR 2 322 -97 5 1438 834 176 64 6 chr5 111888437 111888608 -40648651 + ORR1D1 LTR MaLR 1 181 -193 5 1438 428 174 8 0 chr5 111888608 111888729 -40648530 + CT-rich Low_complexity Low_complexity 1 122 0 5 1438 919 168 75 25 chr5 111888729 111888930 -40648329 + ORR1D1 LTR MaLR 164 374 0 5 1438 411 229 41 10 chr5 111888933 111889030 -40648229 + MTE2a LTR MaLR 280 379 0 5 1438 263 223 19 31 chr5 111889585 111889747 -40647512 + GA-rich Low_complexity Low_complexity 2 161 0 5 1438 238 268 0 0 chr5 111890080 111890136 -40647123 + MIRc SINE MIR 83 138 -130 5 1438 300 27 0 0 chr5 111890320 111890357 -40646902 + (CCCCCA)n Simple_repeat Simple_repeat 2 38 0 5 1438 604 326 113 7 chr5 111890834 111891171 -40646088 - L1MB7 LINE L1 -132 6046 5658 5 1438 402 201 20 4 chr5 111891255 111891346 -40645913 - PB1D10 SINE Alu -39 110 18 5 1438 295 250 0 97 chr5 111891457 111891550 -40645709 - RSINE1 SINE B4 0 165 82 5 1438 233 136 0 96 chr5 111891555 111891628 -40645631 + (ATGTG)n Simple_repeat Simple_repeat 5 70 0 5 1438 3598 23 0 0 chr5 111891680 111892076 -40645183 - MTA_Mm LTR MaLR 0 396 1 5 1438 9616 30 1 0 chr5 111892076 111893173 -40644086 - MTA_Mm-int LTR MaLR 0 1098 1 5 1438 3598 23 0 0 chr5 111893173 111893569 -40643690 - MTA_Mm LTR MaLR 0 396 1 5 1438 411 273 73 36 chr5 111893593 111893730 -40643529 - RSINE1 SINE B4 -8 157 16 5 1438 429 225 112 2 chr5 111894087 111894246 -40643013 - L1ME1 LINE L1 -297 5882 5702 5 1438 891 188 50 15 chr5 111894259 111894459 -40642800 - ORR1C2 LTR MaLR -5 379 173 5 1438 247 245 0 0 chr5 111894463 111894512 -40642747 + GA-rich Low_complexity Low_complexity 1 49 0 5 1438 839 199 26 84 chr5 111894512 111894776 -40642483 - ORR1D1 LTR MaLR -111 259 2 5 1438 821 109 107 13 chr5 111894778 111894927 -40642332 - ORR1D1-int LTR MaLR -1 1369 1207 5 1438 307 225 12 59 chr5 111895471 111895556 -40641703 - ID4 SINE ID -2 81 1 5 1438 494 243 40 27 chr5 111896072 111896220 -40641039 - HAL1-2a_MD LINE L1 -533 2491 2342 5 1438 272 263 0 13 chr5 111896356 111896433 -40640826 - URR1B DNA MER1_type 0 225 150 5 1438 229 128 0 25 chr5 111896422 111896462 -40640797 - URR1B DNA MER1_type -186 39 1 5 1438 194 206 224 61 chr5 111896694 111896792 -40640467 - MIR SINE MIR -93 183 63 5 1438 203 119 44 15 chr5 111897148 111897216 -40640043 + A-rich Low_complexity Low_complexity 2 71 0 5 1438 362 256 121 55 chr5 111897306 111897471 -40639788 - RMER15 LTR ERVL -7 568 393 5 1438 1146 73 0 13 chr5 111897790 111898029 -40639230 + (TCC)n Simple_repeat Simple_repeat 1 235 0 5 1438 1079 109 7 0 chr5 111898037 111898184 -40639075 - B1_Mur4 SINE Alu -1 149 2 5 1438 190 81 54 0 chr5 111898242 111898279 -40638980 + (GGA)n Simple_repeat Simple_repeat 3 41 0 5 1438 279 280 76 8 chr5 111898524 111898643 -40638616 + MLT1H LTR MaLR 125 251 -298 5 1438 215 329 14 0 chr5 111898873 111898900 -40638359 + B4 SINE B4 67 140 -152 5 1438 279 174 0 0 chr5 111898900 111898946 -40638313 + B1F2 SINE Alu 10 55 -94 5 1438 359 138 101 0 chr5 111899124 111899341 -40637918 + (CAGGA)n Simple_repeat Simple_repeat 1 238 0 5 1438 504 278 42 0 chr5 111899366 111899524 -40637735 + MTEa LTR MaLR 1 165 -214 5 1438 812 210 123 46 chr5 111899591 111899638 -40637621 - RMER4B LTR ERVK -291 294 256 5 1438 414 39 0 0 chr5 111899638 111899690 -40637569 + (CAG)n Simple_repeat Simple_repeat 1 52 0 5 1438 812 210 123 46 chr5 111899690 111899902 -40637357 - RMER4B LTR ERVK -330 255 15 5 1438 717 322 24 34 chr5 111901074 111901370 -40635889 - L1MA5 LINE L1 -287 6013 5721 5 1438 369 0 0 0 chr5 111901862 111901903 -40635356 + (GA)n Simple_repeat Simple_repeat 1 41 0 5 1438 402 222 237 19 chr5 111903086 111903242 -40634017 + B4 SINE B4 40 229 -63 5 1438 858 189 0 0 chr5 111903243 111903418 -40633841 + GA-rich Low_complexity Low_complexity 2 176 0 5 1438 333 0 0 0 chr5 111903463 111903500 -40633759 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1438 536 205 24 24 chr5 111903502 111903672 -40633587 + (CATA)n Simple_repeat Simple_repeat 2 171 0 5 1438 255 287 120 17 chr5 111904177 111904348 -40632911 + MIRb SINE MIR 5 194 -68 5 1438 297 310 40 10 chr5 111905343 111905444 -40631815 + MER117 DNA MER1_type 51 154 -43 5 1438 266 347 39 26 chr5 111905501 111905655 -40631604 - MER2 DNA MER2_type -23 322 167 5 1438 279 191 0 73 chr5 111905938 111905952 -40631307 + ID_B1 SINE B4 154 216 -8 5 1438 313 130 56 0 chr5 111905952 111906006 -40631253 + PB1D9 SINE Alu 56 112 -8 5 1438 191 170 21 0 chr5 111906597 111906644 -40630615 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1438 292 227 3 84 chr5 111906729 111907077 -40630182 + (TG)n Simple_repeat Simple_repeat 1 319 0 5 1438 233 191 21 0 chr5 111907258 111907305 -40629954 - MLT1I LTR MaLR 0 411 364 5 1438 235 296 39 48 chr5 111907396 111907499 -40629760 - MLT1I LTR MaLR 0 411 310 5 1438 227 257 54 0 chr5 111907784 111907858 -40629401 + MLT1A1 LTR MaLR 62 139 -269 5 1438 1239 176 77 70 chr5 111908072 111908372 -40628887 + MTC LTR MaLR 1 302 -119 5 1438 195 242 0 0 chr5 111908496 111908558 -40628701 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1438 337 291 4 4 chr5 111908614 111908882 -40628377 + (TG)n Simple_repeat Simple_repeat 1 268 0 5 1438 209 182 0 0 chr5 111909360 111909393 -40627866 + polypyrimidine Low_complexity Low_complexity 4 36 0 5 1438 865 232 101 0 chr5 111910206 111910404 -40626855 - ID_B1 SINE B4 -1 223 6 5 1438 375 201 46 20 chr5 111911421 111911527 -40625732 + PB1D9 SINE Alu 13 120 0 5 1438 189 354 38 12 chr5 111912220 111912300 -40624959 - L2b LINE L2 -48 3327 3246 5 1438 207 0 0 0 chr5 111912762 111912785 -40624474 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1438 504 196 87 19 chr5 111912803 111912907 -40624352 - PB1D10 SINE Alu 0 117 7 5 1438 372 43 0 0 chr5 111913136 111913182 -40624077 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1438 194 40 0 0 chr5 111913439 111913464 -40623795 + L2b LINE L2 3326 3350 -25 5 1438 224 150 40 32 chr5 111913791 111913915 -40623344 + GA-rich Low_complexity Low_complexity 3 127 0 5 1438 754 222 91 0 chr5 111914386 111914562 -40622697 + B3 SINE B2 3 194 -22 5 1438 856 186 18 8 chr5 111914564 111914978 -40622281 + (TATG)n Simple_repeat Simple_repeat 1 418 0 5 1438 258 333 71 0 chr5 111915451 111915535 -40621724 - ID_B1 SINE B4 0 224 135 5 1438 1576 174 49 37 chr5 111915784 111916194 -40621065 + MT2A LTR ERVL 4 538 -63 5 1438 474 18 0 0 chr5 111916194 111916249 -40621010 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1438 486 0 0 0 chr5 111916351 111916405 -40620854 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 5 1438 581 200 47 19 chr5 111916414 111916521 -40620738 - PB1D9 SINE Alu -8 112 3 5 1438 292 271 0 0 chr5 111916550 111916620 -40620639 - L1M5 LINE L1 -297 5827 5758 5 1438 516 261 26 0 chr5 111917201 111917316 -40619943 + PB1D9 SINE Alu 3 120 0 6 1438 385 323 32 80 chr5 111918033 111918282 -40618977 - MLT1J2 LTR MaLR -153 295 59 6 1438 270 226 16 31 chr5 111918657 111918721 -40618538 - ID4_ SINE ID -13 70 8 6 1438 376 240 101 20 chr5 111918723 111918841 -40618418 - B1F SINE Alu -2 125 12 6 1438 603 169 0 0 chr5 111919376 111919524 -40617735 + (TCTA)n Simple_repeat Simple_repeat 3 150 0 6 1438 206 354 72 69 chr5 111920229 111920505 -40616754 + L2b LINE L2 3097 3373 -2 6 1438 388 298 91 51 chr5 111921008 111921284 -40615975 + B4A SINE B4 2 288 -4 6 1438 213 281 0 15 chr5 111921296 111921361 -40615898 + (CATG)n Simple_repeat Simple_repeat 4 67 0 6 1438 224 346 19 0 chr5 111921389 111921493 -40615766 - MIR SINE MIR -50 212 107 6 1438 262 301 154 0 chr5 111921503 111921626 -40615633 - MIR SINE MIR -109 153 12 6 1438 482 272 0 6 chr5 111922011 111922185 -40615074 + (TG)n Simple_repeat Simple_repeat 2 174 0 6 1438 2610 54 26 0 chr5 111922198 111922547 -40614712 - MT2C_Mm LTR ERVL -117 358 1 6 1438 254 306 15 0 chr5 111922561 111922695 -40614564 + (TATATG)n Simple_repeat Simple_repeat 6 141 0 6 1438 1223 248 3 46 chr5 111922751 111923056 -40614203 - B4 SINE B4 0 292 1 6 1438 261 83 0 0 chr5 111923519 111923555 -40613704 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 6 1438 675 216 14 28 chr5 111923736 111923879 -40613380 + B1_Mus2 SINE Alu 4 144 -3 6 1438 3477 28 5 0 chr5 111923955 111924349 -40612910 - MTA_Mm LTR MaLR 0 396 1 6 1438 365 340 65 7 chr5 111924369 111924523 -40612736 + MER58A DNA MER1_type 26 188 -36 6 1438 248 330 9 19 chr5 111924689 111924794 -40612465 + Charlie5 DNA MER1_type 22 125 -2499 6 1438 306 0 0 0 chr5 111925047 111925081 -40612178 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1438 381 43 0 0 chr5 111925081 111925127 -40612132 + (GA)n Simple_repeat Simple_repeat 1 47 0 6 1438 282 29 0 0 chr5 111926665 111926700 -40610559 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1438 2500 137 108 22 chr5 111927012 111927493 -40609766 + Lx4A LINE L1 6528 7056 -2 6 1438 236 261 11 0 chr5 111927654 111927746 -40609513 + (TCCA)n Simple_repeat Simple_repeat 3 95 0 6 1438 870 187 0 4 chr5 111927849 111928092 -40609167 + (TCCA)n Simple_repeat Simple_repeat 1 242 0 6 1438 3793 113 84 10 chr5 111928093 111928787 -40608472 - RMER17B LTR ERVK -15 943 199 6 1438 203 307 125 0 chr5 111929708 111929796 -40607463 - L3 LINE CR1 -114 4375 4277 6 1438 1109 30 44 7 chr5 111929796 111929923 -40607336 + B1_Mus2 SINE Alu 5 137 -10 6 1438 336 24 0 0 chr5 111929923 111929964 -40607295 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1438 414 0 0 0 chr5 111930353 111930399 -40606860 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1438 249 33 0 0 chr5 111930399 111930428 -40606831 + (CG)n Simple_repeat Simple_repeat 1 30 0 6 1438 267 203 0 0 chr5 111931637 111931696 -40605563 + (CCCA)n Simple_repeat Simple_repeat 2 60 0 6 1438 1064 256 122 12 chr5 111932060 111932388 -40604871 - MTEb LTR MaLR -15 364 1 6 1438 588 257 17 125 chr5 111932390 111932630 -40604629 - MTEb-int LTR MaLR -2 1578 1365 6 1438 380 262 136 65 chr5 111932635 111932819 -40604440 - RMER15 LTR ERVL -12 563 367 6 1438 555 299 151 33 chr5 111933082 111933386 -40603873 - MTEb-int LTR MaLR -214 1366 1027 6 1438 260 203 141 0 chr5 111933371 111933435 -40603824 - B4 SINE B4 -219 73 1 6 1438 724 308 54 82 chr5 111933678 111934029 -40603230 + MTE2a LTR MaLR 1 351 -68 6 1438 444 294 88 7 chr5 111934363 111934510 -40602749 - RSINE1 SINE B4 -4 161 3 6 1439 297 218 0 0 chr5 111936518 111936573 -40600686 - B3 SINE B2 -159 57 3 6 1439 21 0 0 0 chr5 111936579 111936600 -40600659 + AT_rich Low_complexity Low_complexity 1 21 0 6 1439 203 254 33 0 chr5 111936900 111937022 -40600237 + (TCCA)n Simple_repeat Simple_repeat 4 129 0 6 1439 623 206 6 0 chr5 111937079 111937239 -40600020 + (TCCA)n Simple_repeat Simple_repeat 3 163 0 6 1439 270 0 0 0 chr5 111937239 111937269 -40599990 + (TC)n Simple_repeat Simple_repeat 2 31 0 6 1439 22 0 0 0 chr5 111937269 111937291 -40599968 + AT_rich Low_complexity Low_complexity 1 22 0 6 1439 545 201 17 17 chr5 111937296 111937473 -40599786 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 6 1439 287 305 64 11 chr5 111939527 111939669 -40597590 + MIR SINE MIR 57 195 -67 6 1439 675 210 0 0 chr5 111940179 111940355 -40596904 + (TG)n Simple_repeat Simple_repeat 2 177 0 6 1439 684 183 3 18 chr5 111940386 111940671 -40596588 + (TG)n Simple_repeat Simple_repeat 1 280 0 6 1439 212 0 36 0 chr5 111940671 111940699 -40596560 + (GA)n Simple_repeat Simple_repeat 1 29 0 6 1439 246 247 78 49 chr5 111940735 111940837 -40596422 - MER45C DNA Tip100 -780 173 69 6 1439 259 281 0 0 chr5 111941792 111941856 -40595403 + CT-rich Low_complexity Low_complexity 1 64 0 6 1439 237 222 0 0 chr5 111941873 111941936 -40595323 + CT-rich Low_complexity Low_complexity 3 65 0 6 1439 441 236 29 6 chr5 111941948 111942123 -40595136 + CT-rich Low_complexity Low_complexity 2 180 0 6 1439 389 271 22 58 chr5 111942124 111942261 -40594998 - ID_B1 SINE B4 -3 221 90 6 1439 412 237 49 10 chr5 111942144 111942267 -40594992 - B1F SINE Alu -20 129 2 6 1439 390 283 60 64 chr5 111942976 111943225 -40594034 - L1MB7 LINE L1 -32 6152 5905 6 1439 446 223 41 74 chr5 111943570 111943691 -40593568 - PB1D10 SINE Alu -32 117 1 6 1439 245 329 149 46 chr5 111943706 111943881 -40593378 - ID_B1 SINE B4 0 224 32 6 1439 261 288 72 70 chr5 111945732 111945891 -40591368 + ORR1E LTR MaLR 30 194 -165 6 1439 2445 79 6 3 chr5 111946567 111946908 -40590351 - MTC LTR MaLR -8 413 72 6 1439 477 14 14 28 chr5 111946908 111946980 -40590279 + (TTTTG)n Simple_repeat Simple_repeat 5 75 0 6 1439 632 147 11 0 chr5 111947000 111947130 -40590129 - B1_Mur4 SINE Alu -17 133 1 6 1439 228 300 109 67 chr5 111947018 111947101 -40590158 - MT2B LTR ERVL -337 264 112 6 1439 415 212 0 12 chr5 111947101 111947187 -40590072 - MTC LTR MaLR -336 85 1 6 1439 228 300 109 67 chr5 111947187 111947211 -40590048 - MT2B LTR ERVL -337 111 64 6 1439 1572 246 22 11 chr5 111947278 111947640 -40589619 + MTE2b LTR MaLR 1 366 -13 6 1439 1316 140 89 0 chr5 111947856 111948092 -40589167 + MTC LTR MaLR 139 395 -26 6 1439 224 227 59 29 chr5 111949384 111949452 -40587807 - MIRm SINE MIR -90 186 117 6 1439 585 271 0 3 chr5 111949719 111950086 -40587173 + (TG)n Simple_repeat Simple_repeat 1 366 0 6 1439 543 204 11 22 chr5 111950087 111950267 -40586992 + (TATG)n Simple_repeat Simple_repeat 3 180 0 6 1439 378 295 3 0 chr5 111950232 111950572 -40586687 + (TG)n Simple_repeat Simple_repeat 1 340 0 6 1439 423 0 0 0 chr5 111952680 111952727 -40584532 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 6 1439 354 268 0 32 chr5 111952737 111952922 -40584337 + (TATG)n Simple_repeat Simple_repeat 2 180 0 6 1439 307 286 27 0 chr5 111952922 111953034 -40584225 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 6 1439 230 301 7 0 chr5 111953052 111953198 -40584061 + (TCCA)n Simple_repeat Simple_repeat 1 147 0 6 1439 316 304 0 0 chr5 111953211 111953290 -40583969 + (CCCA)n Simple_repeat Simple_repeat 2 80 0 6 1439 374 85 17 0 chr5 111953398 111953457 -40583802 + (TCCC)n Simple_repeat Simple_repeat 3 62 0 6 1439 399 206 47 6 chr5 111953479 111953650 -40583609 + CT-rich Low_complexity Low_complexity 3 180 0 6 1439 243 241 35 9 chr5 111953688 111953801 -40583458 + CT-rich Low_complexity Low_complexity 2 117 0 6 1439 231 330 0 28 chr5 111953834 111953943 -40583316 + CT-rich Low_complexity Low_complexity 3 108 0 6 1439 246 259 19 0 chr5 111954638 111954692 -40582567 + MIRc SINE MIR 102 156 -112 6 1439 566 227 0 4 chr5 111955237 111955468 -40581791 + (CTCA)n Simple_repeat Simple_repeat 1 230 0 6 1439 849 216 0 0 chr5 111955470 111955746 -40581513 + (TTCA)n Simple_repeat Simple_repeat 1 276 0 6 1439 180 413 16 0 chr5 111957397 111957518 -40579741 + L2b LINE L2 2958 3080 -295 6 1439 683 160 28 11 chr5 111957758 111957935 -40579324 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1439 291 179 0 0 chr5 111959494 111959550 -40577709 + B1F SINE Alu 43 98 -51 6 1439 266 197 33 0 chr5 111959833 111959894 -40577365 + MIRc SINE MIR 76 138 -130 6 1439 270 334 46 0 chr5 111960823 111960951 -40576308 - MIRb SINE MIR -89 179 38 6 1439 191 305 71 40 chr5 111961161 111961260 -40575999 - MIRc SINE MIR -120 148 47 6 1439 207 312 0 15 chr5 111962295 111962360 -40574899 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 6 1439 756 119 0 0 chr5 111962706 111962824 -40574435 + (TCC)n Simple_repeat Simple_repeat 2 119 0 6 1439 191 352 106 8 chr5 111964051 111964174 -40573085 + L2b LINE L2 3078 3212 -163 6 1439 195 228 7 0 chr5 111965694 111965743 -40571516 - MIR SINE MIR -104 172 116 6 1439 348 247 16 66 chr5 111966230 111966412 -40570847 + (CATA)n Simple_repeat Simple_repeat 3 175 0 6 1439 352 275 34 45 chr5 111966474 111966653 -40570606 + (CA)n Simple_repeat Simple_repeat 1 177 0 6 1439 280 119 34 0 chr5 111966696 111966755 -40570504 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1439 237 306 13 40 chr5 111968161 111968236 -40569023 - MIRc SINE MIR -102 166 94 6 1439 269 300 39 20 chr5 111968324 111968426 -40568833 - MER53 DNA hAT -28 165 62 6 1439 865 164 20 11 chr5 111968797 111969153 -40568106 + (CATATA)n Simple_repeat Simple_repeat 1 359 0 6 1439 590 293 108 9 chr5 111969209 111969407 -40567852 + ID_B1 SINE B4 2 205 -87 6 1439 658 189 20 0 chr5 111969409 111969670 -40567589 + GA-rich Low_complexity Low_complexity 1 266 0 6 1439 405 0 0 0 chr5 111969963 111970008 -40567251 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1439 823 276 50 30 chr5 111970014 111970276 -40566983 - B4A SINE B4 -5 287 21 6 1439 1850 104 19 12 chr5 111970911 111971223 -40566036 - ORR1A2 LTR MaLR -24 343 25 6 1439 400 163 21 32 chr5 111971267 111971362 -40565897 - ORR1B1 LTR MaLR -253 141 48 6 1439 281 28 0 0 chr5 111971753 111971789 -40565470 - U2 snRNA snRNA -152 36 1 6 1439 262 316 0 12 chr5 111973454 111973534 -40563725 - ID4 SINE ID -1 82 4 6 1439 495 0 0 0 chr5 111974759 111974814 -40562445 + (CA)n Simple_repeat Simple_repeat 1 55 0 6 1439 238 148 0 62 chr5 111974815 111974880 -40562379 + (TATG)n Simple_repeat Simple_repeat 2 62 0 6 1439 217 376 49 65 chr5 111975556 111975863 -40561396 - L2b LINE L2 -2 3373 3072 6 1439 349 246 0 0 chr5 111977857 111977926 -40559333 + MIRc SINE MIR 83 151 -117 7 1439 492 221 7 84 chr5 111979180 111979323 -40557936 + MTD LTR MaLR 3 134 -287 7 1439 1954 193 49 15 chr5 111979417 111979822 -40557437 + MTD LTR MaLR 1 419 0 7 1439 1065 39 0 0 chr5 111979889 111980019 -40557240 + (TTC)n Simple_repeat Simple_repeat 1 130 0 7 1439 260 350 0 10 chr5 111980843 111981022 -40556237 + (TCTG)n Simple_repeat Simple_repeat 1 177 0 7 1439 192 217 0 0 chr5 111981050 111981096 -40556163 + (CCCA)n Simple_repeat Simple_repeat 3 48 0 7 1439 963 161 0 0 chr5 111981165 111981345 -40555914 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 7 1439 1221 164 3 14 chr5 111981361 111981714 -40555545 + (TCCA)n Simple_repeat Simple_repeat 1 349 0 7 1439 925 204 8 8 chr5 111981739 111982125 -40555134 + (TCCA)n Simple_repeat Simple_repeat 1 386 0 7 1439 417 109 0 0 chr5 111982296 111982360 -40554899 + (CAT)n Simple_repeat Simple_repeat 1 64 0 7 1439 228 288 0 0 chr5 111983504 111983563 -40553696 + CT-rich Low_complexity Low_complexity 3 61 0 7 1439 24 0 0 0 chr5 111984132 111984156 -40553103 + GC_rich Low_complexity Low_complexity 1 24 0 7 1439 209 186 0 0 chr5 111984383 111984426 -40552833 + C-rich Low_complexity Low_complexity 1 43 0 7 1439 227 213 21 0 chr5 111984554 111984601 -40552658 + GA-rich Low_complexity Low_complexity 5 52 0 7 1439 238 154 0 0 chr5 111984667 111984706 -40552553 + MIR SINE MIR 109 147 -61 7 1439 194 213 21 21 chr5 111985030 111985078 -40552181 - MIR SINE MIR -195 67 20 7 1439 425 132 0 32 chr5 111985235 111985329 -40551930 + GA-rich Low_complexity Low_complexity 1 91 0 7 1439 1118 165 78 20 chr5 111985687 111985891 -40551368 + B3 SINE B2 1 216 0 7 1439 1479 153 0 0 chr5 111986110 111986325 -40550934 + B3 SINE B2 2 216 0 7 1439 505 248 105 26 chr5 111987063 111987216 -40550043 - B4A SINE B4 -8 284 120 7 1439 291 275 33 0 chr5 111987328 111987419 -40549840 - MIRc SINE MIR -164 104 11 7 1439 365 87 0 106 chr5 111987844 111988249 -40549010 + (CTGGGG)n Simple_repeat Simple_repeat 1 362 0 7 1439 226 97 0 77 chr5 111988305 111988383 -40548876 + (CTGGGG)n Simple_repeat Simple_repeat 1 72 0 7 1439 683 83 0 94 chr5 111988399 111988731 -40548528 + (CTGGGG)n Simple_repeat Simple_repeat 1 300 0 7 1439 270 322 35 0 chr5 111989300 111989387 -40547872 + L2a LINE L2 3336 3425 -1 7 1439 459 0 0 0 chr5 111989478 111989529 -40547730 + (TGGGGG)n Simple_repeat Simple_repeat 2 52 0 7 1439 1202 27 14 7 chr5 111991117 111991264 -40545995 - B1_Mus1 SINE Alu 0 148 1 7 1439 222 37 0 0 chr5 111992170 111992197 -40545062 + (TG)n Simple_repeat Simple_repeat 1 27 0 7 1439 3237 60 7 2 chr5 111993520 111993924 -40543335 + MTB_Mm LTR MaLR 1 406 -1 7 1439 3256 127 23 9 chr5 111993925 111994489 -40542770 + MTB_Mm-int LTR MaLR 1 572 -526 7 1439 2172 231 90 50 chr5 111994498 111995309 -40541950 + RMER17B LTR ERVK 2 775 -183 7 1439 2338 111 54 19 chr5 111995380 111995930 -40541329 + MTB_Mm-int LTR MaLR 524 1535 -428 7 1439 1892 43 28 4 chr5 111995937 111996191 -40541068 + MTB LTR MaLR 139 398 -2 7 1439 267 350 130 46 chr5 111996212 111996428 -40540831 + MLT1K LTR MaLR 48 281 -314 7 1439 565 286 31 0 chr5 111996627 111996788 -40540471 + B4 SINE B4 1 166 -126 7 1439 670 233 123 0 chr5 111996820 111996966 -40540293 + RSINE1 SINE B4 2 165 0 7 1439 720 146 34 13 chr5 111996972 111997275 -40539984 + (CATA)n Simple_repeat Simple_repeat 1 309 0 7 1439 353 366 29 12 chr5 111997277 111997496 -40539763 - RMER12 LTR ERVK -334 988 766 7 1439 542 320 24 17 chr5 111997496 111997705 -40539554 + B3A SINE B2 1 216 0 7 1439 238 303 0 13 chr5 111997738 111997815 -40539444 + (CA)n Simple_repeat Simple_repeat 1 76 0 7 1439 267 260 58 29 chr5 111998314 111998417 -40538842 - L2c LINE L2 -246 3141 3036 7 1439 549 142 26 0 chr5 111999321 111999434 -40537825 + GA-rich Low_complexity Low_complexity 2 117 0 7 1439 431 225 7 0 chr5 111999518 111999656 -40537603 + (TGG)n Simple_repeat Simple_repeat 2 140 0 7 1439 223 355 0 0 chr5 111999658 111999720 -40537539 - ID4 SINE ID -1 82 21 7 1439 786 200 0 0 chr5 112000767 112001072 -40536187 + (CA)n Simple_repeat Simple_repeat 1 305 0 1 1439 189 0 0 0 chr5 112001072 112001093 -40536166 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 1439 742 156 0 22 chr5 112001093 112001277 -40535982 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1439 195 244 0 0 chr5 112001292 112001370 -40535889 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 1439 381 38 0 19 chr5 112001370 112001423 -40535836 + HAL1-3A_ME LINE L1 1976 2027 -831 4 1439 199 219 138 15 chr5 112001590 112001655 -40535604 + L2b LINE L2 3282 3354 -21 5 1439 185 340 19 46 chr5 112002384 112002492 -40534767 + L3 LINE CR1 4337 4441 -48 6 1439 344 282 50 99 chr5 112004620 112004821 -40532438 + MLT1A LTR MaLR 9 199 -175 7 1439 629 154 0 11 chr5 112004874 112005051 -40532208 + (CAGAGA)n Simple_repeat Simple_repeat 4 178 0 8 1439 629 154 0 11 chr5 112005082 112005259 -40532000 + (CAGAGA)n Simple_repeat Simple_repeat 4 178 0 8 1439 260 265 14 14 chr5 112005291 112005360 -40531899 + MLT1A LTR MaLR 340 408 0 7 1439 510 325 27 50 chr5 112005368 112005569 -40531690 + MTEb LTR MaLR 1 199 -180 9 1439 261 0 0 0 chr5 112005569 112005598 -40531661 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 1 1439 510 325 27 50 chr5 112005598 112005616 -40531643 + MTEb LTR MaLR 200 215 -164 9 1439 575 149 29 29 chr5 112005652 112005825 -40531434 + CT-rich Low_complexity Low_complexity 1 173 0 1 1439 273 29 0 0 chr5 112007052 112007086 -40530173 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1439 299 113 19 0 chr5 112007193 112007246 -40530013 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 1 1439 220 341 62 44 chr5 112007906 112008088 -40529171 + MIR SINE MIR 7 194 -82 1 1439 640 227 0 11 chr5 112008641 112008819 -40528440 + CT-rich Low_complexity Low_complexity 3 178 0 1 1439 316 300 0 32 chr5 112008819 112008912 -40528347 + C-rich Low_complexity Low_complexity 2 91 0 1 1439 693 200 6 17 chr5 112008915 112009093 -40528166 + CT-rich Low_complexity Low_complexity 2 177 0 1 1439 306 0 0 0 chr5 112009449 112009483 -40527776 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1 1439 517 225 99 109 chr5 112009506 112009800 -40527459 - B4 SINE B4 -1 291 1 1 1439 256 227 15 0 chr5 112010995 112011061 -40526198 + MIR SINE MIR 74 140 -68 2 1439 279 297 9 84 chr5 112011190 112011322 -40525937 - MLT1F LTR MaLR 0 560 442 2 1439 193 219 52 45 chr5 112011518 112011606 -40525653 - MIRm SINE MIR -80 188 97 2 1439 1042 232 29 0 chr5 112012406 112012613 -40524646 - B3 SINE B2 0 216 4 2 1439 791 231 4 0 chr5 112012930 112013395 -40523864 + (TCCA)n Simple_repeat Simple_repeat 1 467 0 2 1439 317 340 97 31 chr5 112013397 112013810 -40523449 - L2b LINE L2 -3 3384 2957 2 1439 294 261 14 0 chr5 112015226 112015295 -40521964 + CT-rich Low_complexity Low_complexity 2 71 0 2 1439 831 284 92 56 chr5 112016921 112017279 -40519980 - MTEa LTR MaLR -8 371 1 2 1439 650 226 8 4 chr5 112017282 112017546 -40519713 + (TCCA)n Simple_repeat Simple_repeat 1 265 0 2 1439 602 226 6 0 chr5 112017561 112017729 -40519530 + (TCCA)n Simple_repeat Simple_repeat 1 169 0 2 1439 1064 128 0 6 chr5 112017750 112017930 -40519329 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 2 1439 943 152 11 0 chr5 112017947 112018125 -40519134 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 2 1439 886 248 9 54 chr5 112018672 112018894 -40518365 + ID_B1 SINE B4 5 216 -8 2 1439 542 219 18 9 chr5 112019007 112019237 -40518022 + CT-rich Low_complexity Low_complexity 1 232 0 3 1439 250 323 71 0 chr5 112019427 112019526 -40517733 + MIRm SINE MIR 21 126 -150 3 1439 255 173 0 0 chr5 112020086 112020138 -40517121 + CT-rich Low_complexity Low_complexity 2 53 0 3 1439 211 256 0 0 chr5 112020156 112020195 -40517064 + polypurine Low_complexity Low_complexity 3 41 0 3 1439 682 165 25 23 chr5 112020195 112020515 -40516744 + GA-rich Low_complexity Low_complexity 1 320 0 3 1439 980 249 102 21 chr5 112020521 112020804 -40516455 - MTEb LTR MaLR -54 325 20 3 1439 302 0 26 0 chr5 112020808 112020846 -40516413 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 3 1439 2494 124 5 74 chr5 112020846 112021290 -40515969 + MTC LTR MaLR 4 416 -5 3 1439 1093 26 48 14 chr5 112021306 112021813 -40515446 + (TCTA)n Simple_repeat Simple_repeat 1 524 0 3 1439 186 43 0 0 chr5 112021830 112021853 -40515406 + (TC)n Simple_repeat Simple_repeat 2 24 0 3 1439 232 301 128 40 chr5 112022063 112022212 -40515047 - MLT2B3 LTR ERVL -352 202 41 4 1439 21 0 0 0 chr5 112022260 112022281 -40514978 + GC_rich Low_complexity Low_complexity 1 21 0 4 1439 857 312 21 3 chr5 112023082 112023365 -40513894 - L1MD1 LINE L1 -348 5894 5607 4 1439 252 161 16 32 chr5 112023594 112023673 -40513586 - MIRc SINE MIR -41 167 90 4 1439 212 244 0 0 chr5 112024409 112024454 -40512805 + GA-rich Low_complexity Low_complexity 2 46 0 4 1439 242 188 0 59 chr5 112024910 112024961 -40512298 - MIRm SINE MIR -16 260 213 4 1439 1440 70 27 0 chr5 112026285 112026472 -40510787 + B2_Mm1a SINE B2 2 193 0 4 1439 232 272 29 41 chr5 112026585 112026692 -40510567 + L2b LINE L2 3128 3225 -162 4 1439 539 158 52 17 chr5 112027878 112028118 -40509141 + GA-rich Low_complexity Low_complexity 1 248 0 4 1439 188 273 0 0 chr5 112029043 112029087 -40508172 + MIR SINE MIR 101 144 -118 4 1439 401 211 8 0 chr5 112029570 112029703 -40507556 + (TTCA)n Simple_repeat Simple_repeat 3 136 0 5 1439 251 122 0 20 chr5 112031047 112031097 -40506162 + (AGGGGG)n Simple_repeat Simple_repeat 3 51 0 5 1439 192 125 0 0 chr5 112032416 112032448 -40504811 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1439 211 297 13 13 chr5 112032454 112032529 -40504730 + (TATG)n Simple_repeat Simple_repeat 1 75 0 5 1439 272 321 45 40 chr5 112032529 112032753 -40504506 + RMER12 LTR ERVK 736 960 -362 5 1439 261 299 25 25 chr5 112032757 112032877 -40504382 + (TATG)n Simple_repeat Simple_repeat 4 123 0 5 1439 291 250 13 38 chr5 112032758 112032837 -40504422 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1439 189 283 9 17 chr5 112032880 112032995 -40504264 + (TATATG)n Simple_repeat Simple_repeat 1 114 0 5 1439 492 18 0 0 chr5 112033662 112033719 -40503540 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1439 273 198 35 47 chr5 112033989 112034074 -40503185 - PB1 SINE Alu 0 127 44 5 1439 280 260 0 27 chr5 112034078 112034153 -40503106 + (TG)n Simple_repeat Simple_repeat 1 73 0 6 1439 239 272 47 31 chr5 112034236 112034365 -40502894 - L1M5 LINE L1 -551 5689 5559 6 1439 228 262 69 78 chr5 112034641 112034757 -40502502 + ORR1D2 LTR MaLR 1 115 -255 6 1439 375 277 124 14 chr5 112035491 112035700 -40501559 + ORR1D2 LTR MaLR 86 317 -53 6 1439 2156 109 0 58 chr5 112036370 112036729 -40500530 + ORR1A1 LTR MaLR 1 338 -8 6 1439 282 228 112 56 chr5 112037440 112037547 -40499712 - MIR SINE MIR -66 202 86 6 1439 358 305 117 25 chr5 112037787 112037964 -40499295 + MIR3 SINE MIR 1 189 -19 6 1439 392 167 0 14 chr5 112038192 112038265 -40498994 + URR1A DNA MER1_type 1 72 -154 6 1439 296 299 235 58 chr5 112038337 112038647 -40498612 - MLT1A1 LTR MaLR 0 408 44 6 1439 303 293 80 10 chr5 112039222 112039322 -40497937 - PB1D10 SINE Alu -9 108 2 6 1439 193 167 0 57 chr5 112039405 112039475 -40497784 + (TCTCTG)n Simple_repeat Simple_repeat 6 71 0 6 1439 501 167 0 11 chr5 112039529 112039620 -40497639 - ID_B1 SINE B4 0 224 135 7 1439 720 148 0 0 chr5 112039688 112039810 -40497449 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 7 1439 1094 116 0 0 chr5 112039812 112039959 -40497300 - B1_Mus1 SINE Alu -1 147 1 7 1439 293 284 0 31 chr5 112039981 112040079 -40497180 - L1M4 LINE L1 -349 5829 5735 7 1439 984 260 117 23 chr5 112040133 112040646 -40496613 + RMER19A LTR ERVK 1 719 -18 7 1439 661 197 53 8 chr5 112041516 112041649 -40495610 - URR1B DNA MER1_type -85 140 2 7 1439 318 331 81 0 chr5 112043156 112043299 -40493960 - MIR SINE MIR -94 182 20 7 1439 627 322 23 23 chr5 112044413 112044632 -40492627 - B4A SINE B4 -72 220 2 7 1439 498 176 4 50 chr5 112044921 112045203 -40492056 + (TG)n Simple_repeat Simple_repeat 1 268 0 7 1439 561 142 17 34 chr5 112045208 112045383 -40491876 + (TATG)n Simple_repeat Simple_repeat 3 174 0 7 1439 326 110 13 52 chr5 112045386 112045463 -40491796 + (TG)n Simple_repeat Simple_repeat 1 74 0 8 1439 396 270 30 84 chr5 112045464 112045490 -40491769 - RSINE1 SINE B4 0 165 148 8 1439 181 43 83 21 chr5 112045490 112045538 -40491721 + (ATGTG)n Simple_repeat Simple_repeat 5 55 0 8 1439 396 270 30 84 chr5 112045538 112045677 -40491582 - RSINE1 SINE B4 -18 147 9 8 1439 326 290 134 22 chr5 112045658 112045792 -40491467 - MTE-int LTR MaLR -1428 152 4 8 1439 293 118 20 0 chr5 112045802 112045853 -40491406 + (TCTCCC)n Simple_repeat Simple_repeat 5 56 0 8 1439 1035 248 81 18 chr5 112045884 112046167 -40491092 - MTE2b LTR MaLR -76 303 3 8 1439 353 58 0 19 chr5 112048207 112048260 -40488999 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1439 401 188 20 44 chr5 112048368 112048621 -40488638 + GA-rich Low_complexity Low_complexity 1 246 0 8 1439 330 217 24 30 chr5 112048633 112048799 -40488460 + GA-rich Low_complexity Low_complexity 3 167 0 8 1439 224 225 15 37 chr5 112048823 112048957 -40488302 + GA-rich Low_complexity Low_complexity 1 131 0 8 1439 229 280 13 51 chr5 112051083 112051162 -40486097 + MT2A LTR ERVL 54 129 -404 8 1439 479 279 13 45 chr5 112051100 112051254 -40486005 + MTEa LTR MaLR 67 215 -164 8 1439 237 302 52 83 chr5 112051276 112051444 -40485815 + MTEa LTR MaLR 202 371 -8 8 1439 248 299 12 49 chr5 112051949 112052030 -40485229 - PB1D10 SINE Alu -36 81 4 9 1439 1490 83 16 0 chr5 112052486 112052678 -40484581 - B2_Mm2 SINE B2 0 195 1 9 1439 303 290 18 36 chr5 112053919 112054030 -40483229 - MER5A DNA MER1_type -58 131 23 9 1439 337 224 0 0 chr5 112055476 112055543 -40481716 + MER103 DNA DNA 31 97 -69 9 1439 250 207 100 0 chr5 112057738 112057888 -40479371 + (TAGTG)n Simple_repeat Simple_repeat 5 169 0 9 1439 478 250 35 28 chr5 112059258 112059402 -40477857 - MTEb LTR MaLR -17 362 218 9 1439 316 192 38 65 chr5 112059579 112059763 -40477496 + (CA)n Simple_repeat Simple_repeat 1 179 0 9 1439 304 193 47 58 chr5 112059851 112060022 -40477237 + (CA)n Simple_repeat Simple_repeat 1 169 0 9 1439 181 284 71 111 chr5 112060262 112060361 -40476898 - MIRm SINE MIR -95 181 87 9 1439 396 301 58 3 chr5 112061334 112061502 -40475757 + MIRb SINE MIR 1 183 -93 9 1439 271 240 58 21 chr5 112061719 112061806 -40475453 + PB1D7 SINE Alu 7 101 -16 1 1439 1258 187 9 5 chr5 112061806 112062021 -40475238 + B3 SINE B2 1 216 0 1 1439 258 278 126 58 chr5 112062021 112062036 -40475223 + PB1D10 SINE Alu 102 116 -1 1 1439 1458 188 45 36 chr5 112062178 112062510 -40474749 - ORR1D1 LTR MaLR 0 374 40 1 1439 267 220 4 8 chr5 112062508 112062594 -40474665 - MTEb LTR MaLR -248 146 58 9 1439 301 195 0 88 chr5 112062578 112062741 -40474518 - ORR1D1 LTR MaLR -253 141 40 1 1439 582 201 0 65 chr5 112062712 112062850 -40474409 - ORR1D1 LTR MaLR -245 129 1 1 1439 808 267 13 40 chr5 112063041 112063267 -40473992 + ID_B1 SINE B4 5 224 0 1 1439 350 256 8 11 chr5 112064127 112064244 -40473015 + PB1D10 SINE Alu 9 129 -21 1 1439 468 238 0 0 chr5 112064837 112064984 -40472275 + (TG)n Simple_repeat Simple_repeat 2 148 0 1 1440 190 344 147 37 chr5 112066973 112067163 -40470096 - L2 LINE L2 -511 2908 2698 1 1440 1215 62 0 0 chr5 112067205 112067351 -40469908 - B1_Mus1 SINE Alu 0 148 3 1 1440 265 264 83 0 chr5 112067769 112067841 -40469418 + MTEb LTR MaLR 287 364 -15 1 1440 393 298 53 0 chr5 112070382 112070496 -40466763 - PB1D7 SINE Alu 0 120 1 1 1440 561 253 20 108 chr5 112070803 112070821 -40466438 - B2_Mm2 SINE B2 -8 187 170 1 1440 189 0 0 0 chr5 112070821 112070842 -40466417 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1440 849 224 27 18 chr5 112070842 112071027 -40466232 - B3 SINE B2 -31 185 2 1 1440 1220 88 53 0 chr5 112071180 112071350 -40465909 + B2_Mm1t SINE B2 1 179 -14 1 1440 259 83 0 0 chr5 112071384 112071420 -40465839 + B2_Mm1a SINE B2 125 160 -33 1 1440 186 43 0 0 chr5 112071420 112071443 -40465816 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1440 307 333 19 0 chr5 112071728 112071836 -40465423 + B1F1 SINE Alu 25 134 -15 1 1440 694 302 26 18 chr5 112071846 112072015 -40465244 + B4A SINE B4 3 173 -119 1 1440 1982 214 9 19 chr5 112072015 112072435 -40464824 - MTD LTR MaLR 0 419 4 1 1440 411 274 26 26 chr5 112072435 112072541 -40464718 + B4A SINE B4 176 281 -11 1 1440 387 0 0 0 chr5 112072549 112072592 -40464667 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1440 284 322 18 0 chr5 112073100 112073271 -40463988 + (CTGTG)n Simple_repeat Simple_repeat 3 176 0 1 1440 434 294 0 0 chr5 112073214 112073391 -40463868 + (GGCTG)n Simple_repeat Simple_repeat 1 177 0 1 1440 338 330 0 0 chr5 112073322 112073581 -40463678 + (GGATG)n Simple_repeat Simple_repeat 1 259 0 1 1440 432 0 0 0 chr5 112074446 112074494 -40462765 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1440 636 125 0 0 chr5 112074494 112074622 -40462637 + (GA)n Simple_repeat Simple_repeat 1 128 0 1 1440 321 169 18 36 chr5 112074629 112074864 -40462395 + (CAGAGA)n Simple_repeat Simple_repeat 1 230 0 1 1440 1201 127 6 9 chr5 112076081 112076424 -40460835 + (TCCA)n Simple_repeat Simple_repeat 1 341 0 1 1440 228 100 0 0 chr5 112076623 112076663 -40460596 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1440 510 17 0 0 chr5 112077505 112077564 -40459695 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1440 273 119 0 0 chr5 112078872 112078914 -40458345 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 1 1440 211 186 51 0 chr5 112078915 112078974 -40458285 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 1 1440 2068 82 7 10 chr5 112078976 112079273 -40457986 - ORR1A2 LTR MaLR -3 324 29 1 1440 372 166 53 46 chr5 112079277 112079364 -40457895 - ORR1A2 LTR MaLR -295 99 1 1 1440 396 59 44 0 chr5 112079405 112079473 -40457786 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 1 1440 771 139 0 0 chr5 112079558 112079687 -40457572 + (TTCC)n Simple_repeat Simple_repeat 2 130 0 1 1440 183 80 0 0 chr5 112081936 112081961 -40455298 + (TGGA)n Simple_repeat Simple_repeat 4 28 0 1 1440 310 314 32 0 chr5 112082099 112082223 -40455036 + (TGGA)n Simple_repeat Simple_repeat 3 130 0 1 1440 479 245 109 6 chr5 112082228 112082384 -40454875 - MTC LTR MaLR 0 419 248 1 1440 558 239 17 0 chr5 112082384 112082620 -40454639 + (TG)n Simple_repeat Simple_repeat 1 240 0 1 1440 684 236 34 16 chr5 112082639 112082842 -40454417 - MTC LTR MaLR -180 241 14 1 1440 383 326 7 7 chr5 112082863 112083005 -40454254 + (TGGA)n Simple_repeat Simple_repeat 1 142 0 1 1440 498 180 0 0 chr5 112083893 112083993 -40453266 + (TCCA)n Simple_repeat Simple_repeat 2 101 0 1 1440 1407 220 77 3 chr5 112084100 112084438 -40452821 - ORR1D1 LTR MaLR -9 365 3 1 1440 196 321 32 97 chr5 112084524 112084648 -40452611 + MIR SINE MIR 25 140 -68 1 1440 1412 83 17 0 chr5 112084745 112084926 -40452333 + B2_Mm2 SINE B2 4 187 -8 1 1440 1179 70 0 0 chr5 112085172 112085314 -40451945 + B1_Mus1 SINE Alu 3 144 -4 1 1440 188 314 68 90 chr5 112086364 112086497 -40450762 - MIR3 SINE MIR -39 169 40 1 1440 288 0 0 0 chr5 112086872 112086904 -40450355 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1440 1190 50 0 0 chr5 112087564 112087704 -40449555 + B1_Mus1 SINE Alu 1 140 -8 1 1440 354 45 0 0 chr5 112087704 112087748 -40449511 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1440 579 207 81 147 chr5 112087914 112088112 -40449147 + B3A SINE B2 9 193 -5 1 1440 273 247 51 7 chr5 112088709 112088790 -40448469 + MIRm SINE MIR 81 160 -116 1 1440 348 264 91 36 chr5 112090266 112090376 -40446883 - PB1D10 SINE Alu 0 117 2 1 1440 203 268 31 58 chr5 112091399 112091494 -40445765 - MIRm SINE MIR -114 162 60 1 1440 414 0 0 0 chr5 112091592 112091638 -40445621 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 1 1440 991 122 5 13 chr5 112091699 112091926 -40445333 + (TCCA)n Simple_repeat Simple_repeat 1 224 0 1 1440 211 284 11 33 chr5 112093258 112093349 -40443910 + GA-rich Low_complexity Low_complexity 4 92 0 1 1440 324 125 0 0 chr5 112093360 112093424 -40443835 + (CAGAGA)n Simple_repeat Simple_repeat 3 66 0 1 1440 219 69 0 0 chr5 112093582 112093611 -40443648 + (TCC)n Simple_repeat Simple_repeat 2 30 0 1 1440 780 286 24 190 chr5 112097379 112097880 -40439379 + MTE-int LTR MaLR 110 527 -1053 1 1440 452 182 19 0 chr5 112098161 112098267 -40438992 + ORR1B1 LTR MaLR 1 139 -255 1 1440 268 208 0 25 chr5 112098270 112098349 -40438910 + ORR1A1 LTR MaLR 32 108 -238 1 1440 2022 94 3 10 chr5 112098426 112098727 -40438532 + ORR1A2 LTR MaLR 28 326 -1 1 1440 227 325 77 18 chr5 112098800 112098969 -40438290 - Tigger7 DNA MER2_type -36 2455 2277 1 1440 255 211 0 0 chr5 112098996 112099048 -40438211 + B3 SINE B2 21 72 -144 1 1440 428 273 27 9 chr5 112099174 112099285 -40437974 - Tigger7 DNA MER2_type -2371 120 8 1 1440 1417 208 76 24 chr5 112099552 112099882 -40437377 - MTD LTR MaLR -72 347 1 1 1440 240 111 0 0 chr5 112099967 112100003 -40437256 + (CAA)n Simple_repeat Simple_repeat 3 38 0 1 1440 248 319 9 26 chr5 112102327 112102443 -40434816 - MER103 DNA DNA -50 116 3 1 1440 967 99 0 7 chr5 112102565 112102707 -40434552 + B1_Mus1 SINE Alu 8 148 0 1 1440 589 11 56 0 chr5 112102707 112102797 -40434462 + (GAAA)n Simple_repeat Simple_repeat 3 97 0 1 1440 591 264 25 0 chr5 112102850 112103009 -40434250 + B4A SINE B4 50 212 -80 1 1440 415 282 8 8 chr5 112103750 112103868 -40433391 + PB1 SINE Alu 27 223 -88 1 1440 336 243 74 24 chr5 112103916 112104046 -40433213 - PB1D10 SINE Alu -11 138 1 1 1440 240 204 0 20 chr5 112104002 112104052 -40433207 - B4A SINE B4 -164 128 80 1 1440 212 0 36 0 chr5 112105443 112105471 -40431788 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1440 364 262 66 13 chr5 112105471 112105622 -40431637 + (CATG)n Simple_repeat Simple_repeat 2 160 0 1 1440 231 188 48 14 chr5 112105711 112105799 -40431460 - B1F SINE Alu -5 144 23 1 1440 507 237 11 6 chr5 112107852 112108030 -40429229 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1440 255 357 47 47 chr5 112109106 112109297 -40427962 + MIRb SINE MIR 40 230 -38 1 1440 209 163 20 0 chr5 112109424 112109473 -40427786 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 1 1440 921 172 0 0 chr5 112109497 112109677 -40427582 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1 1440 752 100 30 15 chr5 112109712 112109844 -40427415 - B1_Mus1 SINE Alu 0 148 15 1 1440 242 277 104 37 chr5 112110021 112110156 -40427103 - L2c LINE L2 -224 3163 3020 1 1440 186 159 63 0 chr5 112111125 112111188 -40426071 + (TCTCTG)n Simple_repeat Simple_repeat 2 68 0 1 1440 234 195 25 25 chr5 112111198 112111342 -40425917 + (TCTG)n Simple_repeat Simple_repeat 1 144 0 1 1440 202 281 89 11 chr5 112112273 112112363 -40424896 + MIR SINE MIR 38 134 -74 1 1440 261 293 154 8 chr5 112113492 112113609 -40423650 - MLT1G3 LTR MaLR -191 404 271 1 1440 321 322 72 36 chr5 112113892 112114194 -40423065 - L1MB5 LINE L1 -156 6018 5693 1 1440 918 227 20 0 chr5 112114220 112114418 -40422841 - B3 SINE B2 -12 204 3 1 1440 32 0 0 0 chr5 112114428 112114460 -40422799 + AT_rich Low_complexity Low_complexity 1 32 0 1 1440 198 224 0 0 chr5 112114746 112114795 -40422464 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 1 1440 848 162 6 0 chr5 112114802 112114969 -40422290 + (TCCA)n Simple_repeat Simple_repeat 3 170 0 1 1440 204 217 0 61 chr5 112114969 112114987 -40422272 + (TCTG)n Simple_repeat Simple_repeat 3 18 0 1 1440 333 100 0 0 chr5 112114987 112115037 -40422222 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 1 1440 204 217 0 61 chr5 112115037 112115067 -40422192 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 1 1440 969 113 18 0 chr5 112115067 112115235 -40422024 + (TCCA)n Simple_repeat Simple_repeat 2 172 0 1 1440 398 258 0 17 chr5 112115258 112115439 -40421820 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 1 1440 957 121 0 0 chr5 112115459 112115633 -40421626 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 1 1440 1022 252 67 4 chr5 112115938 112116205 -40421054 - MTE2b LTR MaLR -95 284 1 1 1440 332 333 19 30 chr5 112116205 112116483 -40420776 + (TATATG)n Simple_repeat Simple_repeat 1 274 0 1 1440 245 246 0 0 chr5 112117275 112117340 -40419919 - L2b LINE L2 -295 3080 3016 1 1440 224 172 17 0 chr5 112118268 112118326 -40418933 + (TTCA)n Simple_repeat Simple_repeat 2 60 0 1 1440 742 231 7 0 chr5 112118388 112118535 -40418724 + RSINE1 SINE B4 2 149 -16 1 1440 561 175 39 8 chr5 112118535 112118794 -40418465 + (TG)n Simple_repeat Simple_repeat 1 266 0 2 1440 710 153 11 28 chr5 112118833 112119015 -40418244 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1440 204 241 0 0 chr5 112119007 112119065 -40418194 + (TATG)n Simple_repeat Simple_repeat 4 61 0 2 1440 1542 172 183 112 chr5 112119642 112120114 -40417145 + MT2A LTR ERVL 1 512 -21 2 1440 1140 109 115 34 chr5 112120114 112120323 -40416936 - URR1A DNA MER1_type 0 226 1 2 1440 1542 172 183 112 chr5 112120323 112120348 -40416911 + MT2A LTR ERVL 513 533 0 2 1440 249 278 57 50 chr5 112120619 112120759 -40416500 + RMER15 LTR ERVL 404 544 -31 2 1440 372 204 11 23 chr5 112121695 112121871 -40415388 + (CAGA)n Simple_repeat Simple_repeat 1 174 0 2 1440 453 235 3 11 chr5 112121874 112122237 -40415022 + (CA)n Simple_repeat Simple_repeat 1 359 0 2 1440 200 231 0 9 chr5 112122248 112122353 -40414906 + (CA)n Simple_repeat Simple_repeat 2 105 0 2 1440 319 223 18 0 chr5 112123332 112123444 -40413815 + CT-rich Low_complexity Low_complexity 2 115 0 2 1440 1902 237 71 81 chr5 112124001 112124913 -40412346 + RMER17B LTR ERVK 8 872 -36 2 1440 449 269 0 0 chr5 112125183 112125493 -40411766 + (TG)n Simple_repeat Simple_repeat 1 310 0 2 1440 282 29 0 0 chr5 112125534 112125569 -40411690 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1440 1135 237 22 15 chr5 112125579 112125849 -40411410 - B4 SINE B4 -8 284 13 2 1440 209 208 0 40 chr5 112127728 112127778 -40409481 + CT-rich Low_complexity Low_complexity 1 48 0 2 1440 736 280 95 8 chr5 112128232 112128473 -40408786 + B4A SINE B4 1 262 -30 2 1440 267 31 0 0 chr5 112128533 112128565 -40408694 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2 1440 303 140 0 0 chr5 112128801 112128851 -40408408 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 2 1440 261 108 0 114 chr5 112130848 112130953 -40406306 + C-rich Low_complexity Low_complexity 6 98 0 2 1440 213 108 0 0 chr5 112131539 112131576 -40405683 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 2 1440 583 190 0 22 chr5 112131577 112131760 -40405499 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1440 381 240 0 0 chr5 112131793 112131968 -40405291 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 1440 465 240 0 0 chr5 112131987 112132162 -40405097 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 1440 232 134 29 29 chr5 112132207 112132276 -40404983 + (TCTG)n Simple_repeat Simple_repeat 2 70 0 2 1440 312 102 0 0 chr5 112132285 112132334 -40404925 + (TG)n Simple_repeat Simple_repeat 2 50 0 2 1440 633 319 97 26 chr5 112132349 112132616 -40404643 - B4 SINE B4 -4 288 3 2 1440 679 228 21 0 chr5 112133200 112133345 -40403914 + RSINE1 SINE B4 3 150 -15 2 1440 291 236 35 83 chr5 112133713 112133776 -40403483 - RMER17D LTR ERVK -373 516 466 2 1440 330 26 0 0 chr5 112133776 112133815 -40403444 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1440 291 236 35 83 chr5 112133815 112134005 -40403254 - RMER17D LTR ERVK -424 465 275 2 1440 237 197 0 0 chr5 112134023 112134094 -40403165 + GA-rich Low_complexity Low_complexity 2 72 0 2 1440 309 318 0 26 chr5 112134113 112134226 -40403033 - B4A SINE B4 -128 164 55 2 1440 260 191 33 11 chr5 112136100 112136190 -40401069 + GA-rich Low_complexity Low_complexity 2 93 0 2 1440 1165 156 61 9 chr5 112137515 112137729 -40399530 - URR1B DNA MER1_type 0 225 1 2 1440 235 305 183 0 chr5 112137984 112138115 -40399144 + MLT1B LTR MaLR 210 364 -26 2 1440 477 225 0 0 chr5 112138478 112138629 -40398630 + GA-rich Low_complexity Low_complexity 1 151 0 2 1440 181 279 23 0 chr5 112139099 112139142 -40398117 + MIR3 SINE MIR 112 155 -53 2 1440 380 225 0 0 chr5 112139209 112139289 -40397970 - ID4 SINE ID -3 80 1 2 1440 1295 111 0 5 chr5 112140766 112140956 -40396303 - B2_Mm2 SINE B2 -4 191 3 2 1440 518 269 80 40 chr5 112141725 112141876 -40395383 - RSINE1 SINE B4 0 165 9 2 1440 22 0 0 0 chr5 112142008 112142030 -40395229 + AT_rich Low_complexity Low_complexity 1 22 0 2 1440 331 247 75 0 chr5 112142169 112142262 -40394997 - B3A SINE B2 0 198 99 2 1440 189 154 0 0 chr5 112142530 112142569 -40394690 + T-rich Low_complexity Low_complexity 1 39 0 2 1440 21 0 0 0 chr5 112142971 112142992 -40394267 + AT_rich Low_complexity Low_complexity 1 21 0 2 1440 337 299 28 9 chr5 112143427 112143443 -40393816 - PB1D10 SINE Alu -5 112 97 2 1440 576 0 0 0 chr5 112143443 112143507 -40393752 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 2 1440 337 299 28 9 chr5 112143507 112143598 -40393661 - PB1D10 SINE Alu -21 96 4 2 1440 226 342 13 13 chr5 112143532 112143609 -40393650 - ID_B1 SINE B4 -75 149 73 2 1440 195 42 0 0 chr5 112144036 112144060 -40393199 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1440 1961 189 51 23 chr5 112144399 112144788 -40392471 - MTD LTR MaLR -8 411 12 2 1440 1251 172 114 15 chr5 112145644 112145915 -40391344 - MTD LTR MaLR -12 407 110 2 1440 321 47 0 0 chr5 112146084 112146127 -40391132 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1440 28 0 0 0 chr5 112147073 112147101 -40390158 + AT_rich Low_complexity Low_complexity 1 28 0 2 1440 259 271 0 41 chr5 112147572 112147645 -40389614 + MIRc SINE MIR 72 141 -127 2 1440 303 262 24 28 chr5 112147829 112147946 -40389313 + MIRc SINE MIR 47 157 -111 2 1440 429 70 0 0 chr5 112148860 112148917 -40388342 + (TCCA)n Simple_repeat Simple_repeat 3 59 0 2 1440 469 368 6 0 chr5 112149570 112149741 -40387518 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 2 1440 609 14 0 0 chr5 112150183 112150253 -40387006 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1440 209 351 93 20 chr5 112150634 112150785 -40386474 - MER91A DNA Tip100 0 196 35 2 1440 390 191 72 54 chr5 112151345 112151478 -40385781 + B3A SINE B2 1 158 -37 2 1440 423 0 0 0 chr5 112151478 112151525 -40385734 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1440 333 214 191 54 chr5 112151525 112151559 -40385700 + B2_Mm2 SINE B2 159 191 -4 2 1440 1034 64 42 7 chr5 112152291 112152433 -40384826 + B1_Mus2 SINE Alu 1 147 0 2 1440 319 277 19 11 chr5 112153118 112153229 -40384030 + L1M5 LINE L1 5445 5562 -600 2 1440 275 87 0 42 chr5 112154039 112154087 -40383172 + (CACG)n Simple_repeat Simple_repeat 2 47 0 2 1440 1501 10 10 0 chr5 112155314 112155522 -40381737 + (CTGGGG)n Simple_repeat Simple_repeat 1 209 0 2 1440 396 236 24 106 chr5 112156168 112156291 -40380968 + B3 SINE B2 91 203 -13 2 1440 267 197 15 29 chr5 112156263 112156331 -40380928 + B3 SINE B2 150 216 0 2 1440 231 218 0 0 chr5 112156356 112156411 -40380848 + (TA)n Simple_repeat Simple_repeat 1 55 0 2 1440 360 330 38 19 chr5 112156415 112156625 -40380634 - RLTR21 LTR ERVK -318 1254 1041 2 1440 974 154 27 21 chr5 112157549 112157735 -40379524 - B2_Mm2 SINE B2 -7 188 2 2 1440 202 382 0 0 chr5 112158260 112158362 -40378897 + (TG)n Simple_repeat Simple_repeat 1 102 0 2 1440 229 354 0 16 chr5 112158425 112158554 -40378705 + (TG)n Simple_repeat Simple_repeat 1 127 0 2 1440 287 291 4 4 chr5 112158869 112159143 -40378116 + (CA)n Simple_repeat Simple_repeat 1 274 0 2 1440 356 292 0 17 chr5 112159206 112159387 -40377872 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1440 370 324 0 0 chr5 112159398 112159500 -40377759 + (CA)n Simple_repeat Simple_repeat 2 103 0 2 1440 335 113 0 0 chr5 112159500 112159553 -40377706 + HAL1-3A_ME LINE L1 1976 2028 -830 2 1440 482 316 44 0 chr5 112160824 112160960 -40376299 + B4 SINE B4 144 285 -7 2 1440 342 0 0 0 chr5 112161009 112161047 -40376212 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1440 348 177 13 26 chr5 112161054 112161205 -40376054 + (CAGAGA)n Simple_repeat Simple_repeat 2 150 0 2 1440 339 78 0 0 chr5 112161206 112161257 -40376002 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1440 450 0 0 0 chr5 112161257 112161306 -40375953 + (GA)n Simple_repeat Simple_repeat 2 51 0 2 1440 1098 196 156 36 chr5 112162120 112162454 -40374805 + ORR1D1 LTR MaLR 1 374 0 2 1440 220 307 87 29 chr5 112163382 112163486 -40373773 - B4A SINE B4 -181 111 2 2 1440 207 383 92 15 chr5 112163730 112163860 -40373399 - MIR SINE MIR -30 232 93 2 1440 239 319 14 0 chr5 112164032 112164104 -40373155 - MLT1A1 LTR MaLR -12 396 324 2 1440 333 221 103 11 chr5 112164303 112164390 -40372869 + PB1D10 SINE Alu 21 115 -2 2 1440 743 170 23 6 chr5 112164452 112164624 -40372635 + GA-rich Low_complexity Low_complexity 2 176 0 2 1440 1005 88 0 0 chr5 112164624 112164783 -40372476 + (CAG)n Simple_repeat Simple_repeat 2 160 0 2 1440 1078 211 14 51 chr5 112164804 112165098 -40372161 + RMER10A LTR ERVL 3 285 -157 2 1440 527 235 0 6 chr5 112165113 112165280 -40371979 + (TG)n Simple_repeat Simple_repeat 2 167 0 2 1440 705 217 0 0 chr5 112165307 112165487 -40371772 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1440 473 234 32 16 chr5 112165493 112165619 -40371640 + RMER10A LTR ERVL 315 442 0 2 1440 502 127 134 18 chr5 112165619 112165713 -40371546 + B1_Mur4 SINE Alu 30 138 -12 2 1440 219 36 0 0 chr5 112165713 112165741 -40371518 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2 1440 502 127 134 18 chr5 112165741 112165754 -40371505 + B1_Mur4 SINE Alu 139 150 0 2 1440 261 250 0 29 chr5 112165776 112165846 -40371413 + tRNA-Ala-GCY_ tRNA tRNA 3 70 -5 2 1440 216 314 0 28 chr5 112165783 112165855 -40371404 + B3A SINE B2 16 85 -113 2 1440 226 277 130 92 chr5 112166094 112166136 -40371123 + RMER12 LTR ERVK 719 758 -564 2 1440 1022 184 302 0 chr5 112166136 112166457 -40370802 - MTD LTR MaLR -1 418 1 2 1440 226 277 130 92 chr5 112166457 112166676 -40370583 + RMER12 LTR ERVK 759 990 -332 2 1440 524 246 6 0 chr5 112166686 112166861 -40370398 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 1440 799 327 39 11 chr5 112166863 112167147 -40370112 - B4A SINE B4 0 292 1 2 1440 239 310 12 0 chr5 112167343 112167514 -40369745 + (CTCTG)n Simple_repeat Simple_repeat 4 176 0 2 1440 231 322 6 0 chr5 112167669 112167840 -40369419 + (CTCTG)n Simple_repeat Simple_repeat 5 176 0 2 1440 978 161 0 0 chr5 112168994 112169168 -40368091 + CT-rich Low_complexity Low_complexity 1 174 0 2 1440 903 134 72 5 chr5 112169178 112169368 -40367891 + MTC LTR MaLR 102 305 -95 2 1440 385 309 65 14 chr5 112169582 112169720 -40367539 - MLT1C LTR MaLR -273 194 50 2 1440 21 0 0 0 chr5 112170441 112170462 -40366797 + AT_rich Low_complexity Low_complexity 1 21 0 2 1440 386 132 24 0 chr5 112170962 112171045 -40366214 - Lx4A LINE L1 -1 7057 6973 2 1440 292 219 0 0 chr5 112171050 112171114 -40366145 - MIR SINE MIR -122 140 77 2 1440 260 333 0 10 chr5 112171739 112171842 -40365417 + C-rich Low_complexity Low_complexity 6 107 0 2 1440 402 238 28 0 chr5 112173081 112173224 -40364035 + C-rich Low_complexity Low_complexity 3 149 0 2 1440 2074 92 30 0 chr5 112173466 112173770 -40363489 - ORR1A2 LTR MaLR 0 327 15 2 1440 758 151 0 7 chr5 112174476 112174616 -40362643 + CT-rich Low_complexity Low_complexity 2 140 0 2 1440 315 290 120 0 chr5 112174642 112174742 -40362517 - ID_B1 SINE B4 0 224 113 3 1440 189 0 0 0 chr5 112174936 112174957 -40362302 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1440 1238 211 102 148 chr5 112175444 112175553 -40361706 + ORR1C2 LTR MaLR 3 109 -275 3 1440 904 164 22 39 chr5 112175553 112175731 -40361528 + B2_Mm2 SINE B2 2 176 -19 3 1440 1238 211 102 148 chr5 112175731 112175858 -40361401 + ORR1C2 LTR MaLR 110 191 -193 3 1440 315 0 0 0 chr5 112175858 112175893 -40361366 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 1440 1238 211 102 148 chr5 112175893 112176055 -40361204 + ORR1C2 LTR MaLR 192 384 0 3 1440 888 270 55 24 chr5 112176055 112176309 -40360950 + ORR1D2 LTR MaLR 21 282 -88 3 1440 220 259 0 18 chr5 112176457 112176512 -40360747 + C-rich Low_complexity Low_complexity 5 58 0 3 1440 384 228 0 12 chr5 112176586 112176666 -40360593 + ORR1D2 LTR MaLR 288 366 -4 3 1440 225 301 0 26 chr5 112176786 112176862 -40360397 + L2c LINE L2 3088 3158 -217 3 1440 205 405 0 0 chr5 112177286 112177360 -40359899 - L2b LINE L2 -4 3371 3298 3 1440 602 258 79 21 chr5 112177895 112178085 -40359174 + ID_B1 SINE B4 2 202 -22 3 1440 303 237 9 142 chr5 112177994 112178107 -40359152 + B1F SINE Alu 23 120 -29 3 1440 337 186 57 0 chr5 112178111 112178181 -40359078 + ID_B1 SINE B4 146 219 -5 3 1440 252 284 105 0 chr5 112178514 112178609 -40358650 - MIR SINE MIR -89 173 69 3 1440 30 0 0 0 chr5 112179041 112179071 -40358188 + AT_rich Low_complexity Low_complexity 1 30 0 3 1440 450 65 0 0 chr5 112181118 112181180 -40356079 + (GA)n Simple_repeat Simple_repeat 2 63 0 3 1440 231 252 6 65 chr5 112182175 112182345 -40354914 + (CTGTG)n Simple_repeat Simple_repeat 1 160 0 3 1440 330 341 35 6 chr5 112182484 112182658 -40354601 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 3 1440 452 291 6 0 chr5 112182662 112182837 -40354422 + (CCCA)n Simple_repeat Simple_repeat 1 176 0 3 1440 234 329 12 0 chr5 112182841 112182923 -40354336 + (TCCA)n Simple_repeat Simple_repeat 1 83 0 3 1440 238 353 22 22 chr5 112184245 112184381 -40352878 - MLT1K LTR MaLR 0 595 460 3 1440 1677 21 0 15 chr5 112185443 112185638 -40351621 + B2_Mm1t SINE B2 2 193 0 3 1440 207 0 0 0 chr5 112185645 112185668 -40351591 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1440 1702 153 108 29 chr5 112185668 112185831 -40351428 + ORR1C2 LTR MaLR 12 166 -218 3 1440 705 24 0 0 chr5 112185831 112185914 -40351345 + (TC)n Simple_repeat Simple_repeat 2 84 0 3 1440 1702 153 108 29 chr5 112185914 112186094 -40351165 + ORR1C2 LTR MaLR 167 380 -4 3 1440 391 221 28 46 chr5 112186499 112186608 -40350651 - MTEa LTR MaLR -14 365 259 3 1440 934 313 14 37 chr5 112187030 112187325 -40349934 - MTEa LTR MaLR -89 290 3 3 1440 341 206 0 0 chr5 112187583 112187646 -40349613 + MIRc SINE MIR 85 147 -121 3 1440 245 279 43 80 chr5 112188267 112188454 -40348805 - MLT2B5 LTR ERVL -300 301 122 3 1440 961 243 62 0 chr5 112188300 112188543 -40348716 - MTEb LTR MaLR -121 258 1 3 1440 441 0 0 0 chr5 112189059 112189108 -40348151 + (TATG)n Simple_repeat Simple_repeat 3 51 0 3 1440 249 340 86 26 chr5 112189181 112189332 -40347927 - L2a LINE L2 -1 3425 3266 3 1440 333 82 0 0 chr5 112189332 112189381 -40347878 + (GAAA)n Simple_repeat Simple_repeat 1 49 0 3 1440 192 77 0 0 chr5 112191006 112191032 -40346227 + (TTC)n Simple_repeat Simple_repeat 2 27 0 3 1440 30 27 0 0 chr5 112191032 112191069 -40346190 + AT_rich Low_complexity Low_complexity 1 37 0 3 1440 1938 141 8 83 chr5 112193939 112194311 -40342948 + ORR1B1 LTR MaLR 51 394 0 3 1440 191 143 29 0 chr5 112194632 112194667 -40342592 - MIR SINE MIR -67 141 106 3 1440 211 361 20 10 chr5 112194751 112194849 -40342410 - MIRb SINE MIR -144 124 26 3 1440 708 296 119 0 chr5 112194999 112195219 -40342040 + L1MA5A LINE L1 5577 5827 -470 3 1440 1420 109 0 5 chr5 112195219 112195413 -40341846 + B2_Mm2 SINE B2 3 195 0 3 1440 708 296 119 0 chr5 112195413 112195510 -40341749 + L1MA5A LINE L1 5828 5931 -366 3 1440 267 286 0 42 chr5 112197120 112197215 -40340044 + MLT1A1 LTR MaLR 317 407 -1 3 1440 1212 166 18 22 chr5 112197271 112197493 -40339766 + URR1B DNA MER1_type 3 223 -2 3 1441 470 326 31 13 chr5 112198674 112198901 -40338358 - L1MA9 LINE L1 -315 5997 5767 3 1441 243 23 68 0 chr5 112199821 112199865 -40337394 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 3 1441 280 308 5 9 chr5 112200133 112200230 -40337029 - MIRc SINE MIR -41 167 73 3 1441 595 187 9 27 chr5 112200512 112200622 -40336637 + PB1D10 SINE Alu 2 109 -8 3 1441 324 266 93 4 chr5 112200723 112200867 -40336392 + L1MEg LINE L1 2040 2110 -4132 3 1441 985 145 6 6 chr5 112200870 112201050 -40336209 + GA-rich Low_complexity Low_complexity 1 180 0 3 1441 232 358 0 18 chr5 112203310 112203421 -40333838 + GA-rich Low_complexity Low_complexity 1 109 0 3 1441 315 0 0 0 chr5 112203558 112203593 -40333666 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 1441 380 6 0 162 chr5 112205621 112205865 -40331394 + (CAGAC)n Simple_repeat Simple_repeat 1 204 0 3 1441 277 46 0 163 chr5 112205801 112206010 -40331249 + (CAAAC)n Simple_repeat Simple_repeat 4 178 0 3 1441 530 67 13 0 chr5 112206082 112206157 -40331102 + (TC)n Simple_repeat Simple_repeat 1 76 0 3 1441 232 338 100 29 chr5 112207086 112207296 -40329963 + L2a LINE L2 2936 3160 -266 3 1441 296 333 70 7 chr5 112207306 112207448 -40329811 + MLT1F2 LTR MaLR 1 151 -409 3 1441 924 41 0 8 chr5 112207605 112207728 -40329531 + B1_Mm SINE Alu 26 147 0 3 1441 336 253 30 50 chr5 112209818 112209918 -40327341 + B1F SINE Alu 21 118 -31 3 1441 222 37 0 0 chr5 112210206 112210233 -40327026 + (TTC)n Simple_repeat Simple_repeat 2 28 0 3 1441 3866 45 0 6 chr5 112210233 112210720 -40326539 - L1Md_F3 LINE L1 -21 6563 6080 3 1441 1781 52 4 0 chr5 112210718 112210951 -40326308 + L1_Mm LINE L1 3337 3570 -2313 3 1441 223 211 58 0 chr5 112211019 112211071 -40326188 + L2a LINE L2 3369 3423 -3 3 1441 3164 53 2 32 chr5 112212858 112213266 -40323993 + MTA_Mm LTR MaLR 1 396 0 3 1441 649 290 172 47 chr5 112213269 112213566 -40323693 - MTEa LTR MaLR -36 343 10 3 1441 225 291 33 55 chr5 112213777 112213868 -40323391 + MTEa LTR MaLR 47 135 -244 3 1441 292 252 16 16 chr5 112214225 112214272 -40322987 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 3 1441 318 50 0 0 chr5 112214272 112214312 -40322947 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1441 292 252 16 16 chr5 112214312 112214389 -40322870 + (TCCA)n Simple_repeat Simple_repeat 2 78 0 3 1441 234 0 0 0 chr5 112214417 112214443 -40322816 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3 1441 528 105 0 0 chr5 112214597 112214673 -40322586 - B2_Mm2 SINE B2 -29 166 91 3 1441 553 184 0 29 chr5 112214686 112214826 -40322433 + (TCCA)n Simple_repeat Simple_repeat 1 136 0 3 1441 894 184 0 0 chr5 112215256 112215435 -40321824 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 3 1441 270 176 0 0 chr5 112215448 112215499 -40321760 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 3 1441 804 200 0 0 chr5 112215516 112215696 -40321563 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 3 1441 223 171 0 0 chr5 112215697 112215732 -40321527 + (TAGG)n Simple_repeat Simple_repeat 2 36 0 3 1441 857 168 6 0 chr5 112215732 112215911 -40321348 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 3 1441 374 185 12 0 chr5 112215926 112216007 -40321252 + (TGGA)n Simple_repeat Simple_repeat 1 82 0 3 1441 2983 185 173 14 chr5 112216167 112216803 -40320456 + RMER19A LTR ERVK 1 737 0 3 1441 248 268 18 0 chr5 112217576 112217632 -40319627 + C-rich Low_complexity Low_complexity 3 59 0 3 1441 513 241 18 4 chr5 112217633 112217881 -40319378 + CT-rich Low_complexity Low_complexity 1 251 0 3 1441 312 205 56 0 chr5 112218312 112218473 -40318786 + (TG)n Simple_repeat Simple_repeat 1 170 0 3 1441 504 133 60 12 chr5 112218513 112218681 -40318578 + (TG)n Simple_repeat Simple_repeat 2 177 0 3 1441 282 333 0 0 chr5 112219168 112219270 -40317989 + MIR SINE MIR 59 160 -102 3 1441 213 200 0 0 chr5 112220004 112220044 -40317215 + MIR SINE MIR 116 155 -107 3 1441 184 319 8 58 chr5 112220422 112220542 -40316717 - L2a LINE L2 -148 3278 3165 3 1441 378 61 0 0 chr5 112221684 112221733 -40315526 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1441 270 269 105 121 chr5 112222106 112222130 -40315129 + CYRA11_Mm Unknown Y-chromosome 217 324 -293 3 1441 824 159 126 0 chr5 112222130 112222281 -40314978 - URR1B DNA MER1_type -55 170 1 3 1441 270 269 105 121 chr5 112222281 112222296 -40314963 + CYRA11_Mm Unknown Y-chromosome 325 403 -214 3 1441 180 77 0 0 chr5 112222522 112222548 -40314711 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1441 209 250 76 43 chr5 112223003 112223095 -40314164 - MIR SINE MIR -95 113 19 3 1441 310 327 51 19 chr5 112224144 112224300 -40312959 - HAL1-3A_ME LINE L1 -414 2444 2284 3 1441 268 236 11 11 chr5 112224302 112224392 -40312867 + CT-rich Low_complexity Low_complexity 5 94 0 3 1441 297 211 18 0 chr5 112224403 112224460 -40312799 + B4A SINE B4 173 230 -62 3 1441 210 162 27 0 chr5 112224827 112224864 -40312395 + GA-rich Low_complexity Low_complexity 5 42 0 3 1441 399 41 0 0 chr5 112225050 112225099 -40312160 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1441 378 0 0 0 chr5 112225549 112225591 -40311668 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 3 1441 212 360 55 16 chr5 112225662 112225789 -40311470 + MIR SINE MIR 28 159 -103 3 1441 216 0 0 0 chr5 112226577 112226601 -40310658 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1441 438 20 0 0 chr5 112226812 112226863 -40310396 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 3 1441 890 166 6 11 chr5 112226863 112227217 -40310042 + (TCCA)n Simple_repeat Simple_repeat 1 351 0 3 1441 215 211 42 0 chr5 112227206 112227301 -40309958 + (TCTA)n Simple_repeat Simple_repeat 3 101 0 3 1441 756 111 34 26 chr5 112227317 112227594 -40309665 + (TCTA)n Simple_repeat Simple_repeat 1 279 0 3 1441 210 71 0 0 chr5 112227597 112227625 -40309634 + (TCCA)n Simple_repeat Simple_repeat 1 28 0 3 1441 236 250 18 0 chr5 112228348 112228404 -40308855 + GA-rich Low_complexity Low_complexity 3 59 0 3 1441 271 259 0 0 chr5 112229289 112229347 -40307912 + MER53 DNA hAT 12 69 -124 3 1441 1112 245 104 15 chr5 112230525 112230853 -40306406 - MTE2b LTR MaLR -4 375 19 3 1441 1354 108 0 44 chr5 112230866 112231070 -40306189 + B2_Mm2 SINE B2 1 195 0 3 1441 223 348 21 11 chr5 112231099 112231192 -40306067 + MIR SINE MIR 63 156 -106 3 1441 238 319 0 21 chr5 112232139 112232232 -40305027 - MIRb SINE MIR -113 155 65 4 1441 1194 73 0 0 chr5 112232479 112232658 -40304601 + (CTAGGG)n Simple_repeat Simple_repeat 1 179 0 4 1441 213 217 0 0 chr5 112232808 112232854 -40304405 + ID2 SINE ID 35 80 -3 4 1441 392 237 67 34 chr5 112233362 112233498 -40303761 - B1F SINE Alu 0 149 10 4 1441 526 259 9 0 chr5 112235838 112235946 -40301313 - PB1D10 SINE Alu -8 109 1 4 1441 393 215 67 42 chr5 112235946 112236127 -40301132 - L1MD3 LINE L1 -534 5825 5669 4 1441 329 106 0 0 chr5 112237318 112237365 -40299894 + B1_Mur1 SINE Alu 97 143 -6 4 1441 359 326 101 47 chr5 112237925 112238182 -40299077 + RMER12 LTR ERVK 690 960 -362 4 1441 181 245 0 41 chr5 112238264 112238362 -40298897 + (TATG)n Simple_repeat Simple_repeat 1 94 0 4 1441 597 267 141 21 chr5 112239094 112239285 -40297974 - B3 SINE B2 -2 214 1 4 1441 330 229 0 0 chr5 112242946 112243042 -40294217 + (TG)n Simple_repeat Simple_repeat 1 96 0 4 1441 869 286 30 64 chr5 112243044 112243339 -40293920 - B4 SINE B4 0 292 8 4 1441 2437 108 12 3 chr5 112243365 112243708 -40293551 - ORR1A1 LTR MaLR 0 346 1 4 1441 252 286 28 14 chr5 112243824 112243895 -40293364 - ID4_ SINE ID -10 73 2 4 1441 1112 270 60 17 chr5 112244342 112244692 -40292567 - ORR1D2 LTR MaLR -1 369 5 4 1441 909 178 14 0 chr5 112245544 112245690 -40291569 - B1_Mur2 SINE Alu -1 148 1 4 1441 230 381 33 33 chr5 112246243 112246425 -40290834 - LTR37A LTR ERV1 0 426 245 4 1441 222 255 0 24 chr5 112246638 112246706 -40290553 + MIRc SINE MIR 117 183 -93 4 1441 548 164 0 9 chr5 112246990 112247101 -40290158 + (CA)n Simple_repeat Simple_repeat 1 110 0 4 1441 408 88 0 0 chr5 112247194 112247251 -40290008 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1441 326 80 0 20 chr5 112247362 112247413 -40289846 + (AGGGGG)n Simple_repeat Simple_repeat 4 53 0 4 1441 225 0 0 0 chr5 112247454 112247479 -40289780 + (CCCCCA)n Simple_repeat Simple_repeat 2 26 0 4 1441 1156 77 6 17 chr5 112248071 112248083 -40289176 - B2_Mm1a SINE B2 -23 170 160 4 1441 180 0 0 0 chr5 112248083 112248103 -40289156 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 4 1441 1156 77 6 17 chr5 112248103 112248262 -40288997 - B2_Mm1a SINE B2 -34 159 1 4 1441 424 256 62 0 chr5 112248339 112248468 -40288791 + HAL1-2a_MD LINE L1 2415 2551 -473 4 1441 279 0 0 0 chr5 112250788 112250819 -40286440 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 4 1441 550 244 0 34 chr5 112250827 112250946 -40286313 - PB1D10 SINE Alu 0 117 3 4 1441 851 251 156 31 chr5 112251337 112251400 -40285859 + MTEa LTR MaLR 5 61 -318 4 1441 405 0 0 0 chr5 112251400 112251445 -40285814 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1441 851 251 156 31 chr5 112251445 112251669 -40285590 + MTEa LTR MaLR 62 328 -51 4 1441 186 43 0 0 chr5 112253328 112253351 -40283908 + (TTA)n Simple_repeat Simple_repeat 2 24 0 4 1441 656 264 47 16 chr5 112253453 112253645 -40283614 - Lx8 LINE L1 -320 7153 6956 4 1441 299 221 139 73 chr5 112253883 112254020 -40283239 - L1M5 LINE L1 -584 5589 5444 4 1441 725 200 0 11 chr5 112254308 112254422 -40282837 + (TCCA)n Simple_repeat Simple_repeat 4 116 0 4 1441 3867 35 49 0 chr5 112254422 112254875 -40282384 + MT2C_Mm LTR ERVL 1 475 0 4 1441 725 200 0 11 chr5 112254875 112254937 -40282322 + (TCCA)n Simple_repeat Simple_repeat 2 63 0 4 1441 337 256 57 79 chr5 112255607 112255747 -40281512 - LTR33B LTR ERVL -332 171 35 4 1441 1225 61 0 0 chr5 112256020 112256167 -40281092 + B1_Mus2 SINE Alu 1 147 0 4 1441 3210 83 0 2 chr5 112256443 112256843 -40280416 - MTB LTR MaLR -1 399 1 4 1441 258 321 85 72 chr5 112257097 112257412 -40279847 - ORR1E LTR MaLR -5 354 23 4 1441 3827 141 7 74 chr5 112257883 112258836 -40278423 + RMER17A2 LTR ERVK 31 865 -24 4 1441 225 182 0 0 chr5 112259541 112259596 -40277663 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1441 213 65 0 0 chr5 112259917 112259948 -40277311 + (CATA)n Simple_repeat Simple_repeat 4 34 0 4 1441 782 176 4 5 chr5 112260251 112260707 -40276552 + (CA)n Simple_repeat Simple_repeat 1 455 0 4 1441 2912 97 12 17 chr5 112260939 112261348 -40275911 + MTB_Mm LTR MaLR 1 407 0 4 1441 369 0 0 0 chr5 112262080 112262121 -40275138 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1441 438 103 0 0 chr5 112262121 112262199 -40275060 + (GA)n Simple_repeat Simple_repeat 1 78 0 4 1441 1691 232 72 8 chr5 112262614 112263005 -40274254 - MTD LTR MaLR -3 416 1 4 1441 2273 257 86 143 chr5 112263005 112264339 -40272920 - MTD-int LTR MaLR 0 1258 2 4 1441 1594 211 67 76 chr5 112264340 112264746 -40272513 - MTD LTR MaLR 0 421 20 4 1441 257 194 14 43 chr5 112265265 112265335 -40271924 + CT-rich Low_complexity Low_complexity 4 71 0 4 1441 768 294 21 35 chr5 112266736 112267021 -40270238 + B4A SINE B4 10 290 -2 4 1441 308 268 72 0 chr5 112268418 112268515 -40268744 + PB1D7 SINE Alu 1 104 -16 4 1441 305 238 10 0 chr5 112268732 112268833 -40268426 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 4 1441 925 146 10 0 chr5 112268999 112269206 -40268053 + (TCCA)n Simple_repeat Simple_repeat 1 209 0 4 1441 426 79 0 0 chr5 112269238 112269301 -40267958 + (TCCC)n Simple_repeat Simple_repeat 2 64 0 4 1441 351 0 0 0 chr5 112269444 112269483 -40267776 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1441 654 157 0 0 chr5 112270271 112270392 -40266867 + (TCCA)n Simple_repeat Simple_repeat 2 122 0 4 1441 891 165 3 0 chr5 112270457 112270797 -40266462 + (CA)n Simple_repeat Simple_repeat 1 341 0 4 1441 189 154 0 0 chr5 112271549 112271588 -40265671 + A-rich Low_complexity Low_complexity 1 39 0 4 1441 244 287 25 92 chr5 112271855 112271974 -40265285 - MLT1B LTR MaLR -279 111 1 4 1441 702 24 0 0 chr5 112272319 112272403 -40264856 + (TCTCC)n Simple_repeat Simple_repeat 3 86 0 4 1441 339 185 0 0 chr5 112273861 112273953 -40263306 + GA-rich Low_complexity Low_complexity 1 92 0 4 1441 258 280 29 29 chr5 112274014 112274117 -40263142 + GA-rich Low_complexity Low_complexity 4 106 0 4 1441 237 269 25 141 chr5 112274211 112274332 -40262927 + MLT1A1 LTR MaLR 12 118 -247 4 1441 306 241 0 139 chr5 112274401 112274502 -40262757 + MLT1A1 LTR MaLR 315 401 -7 4 1441 250 341 75 30 chr5 112275023 112275156 -40262103 + MIRc SINE MIR 12 150 -118 4 1441 1911 189 65 3 chr5 112275177 112275564 -40261695 + MTD LTR MaLR 1 411 -8 4 1441 432 99 0 0 chr5 112275713 112275784 -40261475 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1441 423 0 0 0 chr5 112275784 112275830 -40261429 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1441 421 254 26 17 chr5 112276665 112276781 -40260478 - PB1D10 SINE Alu 0 117 1 4 1441 536 121 11 0 chr5 112276833 112276924 -40260335 + (GA)n Simple_repeat Simple_repeat 1 92 0 4 1441 364 208 230 21 chr5 112277106 112277263 -40259996 + L1MA5A LINE L1 5665 5866 -302 4 1441 280 309 65 19 chr5 112277456 112277611 -40259648 + L1MD LINE L1 5578 5739 -620 4 1441 721 251 46 11 chr5 112277620 112277804 -40259455 - B3 SINE B2 -27 189 19 4 1441 575 258 103 42 chr5 112277920 112278092 -40259167 - ORR1E LTR MaLR -111 267 98 4 1441 630 0 0 0 chr5 112278092 112278162 -40259097 + (TCC)n Simple_repeat Simple_repeat 1 70 0 4 1441 575 252 102 36 chr5 112278162 112278247 -40259012 - ORR1E LTR MaLR -251 108 1 4 1441 2304 222 100 40 chr5 112279081 112279843 -40257416 - RMER19B LTR ERVK -12 890 1 4 1441 269 254 42 0 chr5 112280010 112280081 -40257178 + PB1D7 SINE Alu 46 119 -1 4 1441 2951 104 10 17 chr5 112280465 112280875 -40256384 + MTB_Mm LTR MaLR 1 407 0 4 1441 362 123 31 0 chr5 112281718 112281783 -40255476 + C-rich Low_complexity Low_complexity 3 69 0 4 1441 999 227 127 22 chr5 112283152 112283397 -40253862 + MTD LTR MaLR 1 274 -145 4 1441 468 176 22 0 chr5 112283397 112283488 -40253771 - MTD LTR MaLR -1 418 326 4 1441 254 220 10 92 chr5 112284080 112284275 -40252984 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 4 1441 918 244 10 10 chr5 112284412 112284611 -40252648 - B3 SINE B2 -15 201 3 4 1441 270 282 0 56 chr5 112287638 112287685 -40249574 + ORR1C2 LTR MaLR 33 79 -295 4 1441 1582 135 0 0 chr5 112287685 112287907 -40249352 + URR1B DNA MER1_type 1 222 -3 4 1441 270 282 0 56 chr5 112287907 112287949 -40249310 + ORR1C2 LTR MaLR 80 117 -257 4 1441 882 98 0 0 chr5 112287981 112288134 -40249125 + (TC)n Simple_repeat Simple_repeat 1 153 0 4 1441 665 204 86 0 chr5 112288134 112288296 -40248963 + ORR1C2 LTR MaLR 209 384 0 4 1441 920 251 40 71 chr5 112288296 112288646 -40248613 - ORR1D1 LTR MaLR -31 343 5 4 1441 1251 260 69 6 chr5 112288650 112288983 -40248276 - MTD LTR MaLR -63 356 3 4 1441 1521 280 37 5 chr5 112288988 112289393 -40247866 + Lx8 LINE L1 6644 7061 -412 4 1441 264 318 45 27 chr5 112290321 112290431 -40246828 + MLT1A LTR MaLR 20 131 -243 4 1441 370 264 103 9 chr5 112291333 112291440 -40245819 - PB1D10 SINE Alu 0 117 1 4 1441 359 197 19 7 chr5 112291440 112291546 -40245713 + MTD LTR MaLR 12 141 -253 4 1441 1218 145 0 10 chr5 112291572 112291774 -40245485 + ORR1A1 LTR MaLR 44 243 -103 4 1441 1130 220 60 21 chr5 112291758 112292041 -40245218 + MTD LTR MaLR 118 411 -8 4 1441 955 180 19 63 chr5 112292208 112292415 -40244844 + B3A SINE B2 1 198 0 4 1441 196 354 72 10 chr5 112292762 112292859 -40244400 - MIRm SINE MIR -125 151 49 4 1441 27 0 0 0 chr5 112292944 112292971 -40244288 + AT_rich Low_complexity Low_complexity 1 27 0 4 1441 576 0 0 0 chr5 112292971 112293035 -40244224 + (GA)n Simple_repeat Simple_repeat 2 65 0 4 1441 388 248 5 15 chr5 112294434 112294642 -40242617 + GA-rich Low_complexity Low_complexity 1 205 0 4 1441 207 302 0 0 chr5 112294667 112294730 -40242529 + GA-rich Low_complexity Low_complexity 2 64 0 4 1441 267 284 0 0 chr5 112294730 112294846 -40242413 + (TGGG)n Simple_repeat Simple_repeat 4 119 0 4 1441 652 298 63 5 chr5 112295437 112295643 -40241616 - ID_B1 SINE B4 0 224 7 4 1441 236 299 0 0 chr5 112296130 112296197 -40241062 - MTEa LTR MaLR 0 379 313 4 1441 215 143 24 0 chr5 112296198 112296240 -40241019 + GA-rich Low_complexity Low_complexity 3 45 0 4 1441 798 123 18 0 chr5 112296240 112296522 -40240737 + (GGA)n Simple_repeat Simple_repeat 1 287 0 4 1441 1285 250 42 0 chr5 112296524 112296836 -40240423 - MTEa LTR MaLR -54 325 1 4 1441 398 237 76 8 chr5 112297609 112297728 -40239531 + MIRm SINE MIR 23 149 -127 5 1441 270 0 0 0 chr5 112297797 112297827 -40239432 + (CA)n Simple_repeat Simple_repeat 2 31 0 5 1441 1848 100 224 58 chr5 112302138 112302499 -40234760 - MTC LTR MaLR 0 421 1 5 1441 408 321 32 32 chr5 112303456 112303646 -40233613 - MER119 DNA MER1_type -248 335 146 5 1441 295 272 257 0 chr5 112304467 112304603 -40232656 - MTEa LTR MaLR -203 176 6 5 1441 398 184 21 28 chr5 112304881 112305026 -40232233 + (TTCA)n Simple_repeat Simple_repeat 3 146 0 5 1441 437 156 0 0 chr5 112307598 112307655 -40229604 + ORR1A3 LTR MaLR 1 57 -272 5 1441 722 202 13 56 chr5 112307655 112307862 -40229397 + ORR1A3 LTR MaLR 1 228 -166 5 1441 1735 173 32 30 chr5 112307858 112308390 -40228869 - ORR1A4 LTR MaLR -8 386 1 5 1441 218 236 165 41 chr5 112309322 112309419 -40227840 + MIRc SINE MIR 26 134 -134 5 1441 3595 61 4 15 chr5 112309684 112310148 -40227111 + L1_Mus3 LINE L1 6180 6638 0 5 1441 226 324 0 29 chr5 112310499 112310569 -40226690 + Charlie8 DNA MER1_type 48 115 -2313 5 1441 942 176 7 0 chr5 112310949 112311097 -40226162 - B1_Mur3 SINE Alu 0 149 1 5 1441 341 296 9 19 chr5 112311169 112311494 -40225765 + (CCCA)n Simple_repeat Simple_repeat 1 321 0 5 1441 494 217 0 11 chr5 112311507 112311689 -40225570 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1441 303 118 20 0 chr5 112311708 112311759 -40225500 + HAL1-3A_ME LINE L1 1976 2027 -831 5 1441 222 300 14 14 chr5 112312226 112312297 -40224962 - L2c LINE L2 -219 3168 3098 5 1441 497 282 78 0 chr5 112312361 112312503 -40224756 + ID_B1 SINE B4 50 202 -22 5 1441 236 309 133 16 chr5 112312397 112312525 -40224734 + B1F SINE Alu 6 148 -1 5 1441 228 380 19 0 chr5 112312625 112312733 -40224526 - MIRb SINE MIR -130 138 29 5 1441 180 219 0 0 chr5 112314451 112314492 -40222767 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 5 1441 249 108 0 0 chr5 112314570 112314607 -40222652 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 5 1441 957 145 0 0 chr5 112314608 112314787 -40222472 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 5 1441 241 218 36 0 chr5 112314836 112314891 -40222368 + GA-rich Low_complexity Low_complexity 4 60 0 5 1441 477 0 0 0 chr5 112316716 112316769 -40220490 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1441 327 85 0 0 chr5 112317074 112317121 -40220138 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 5 1441 224 30 0 29 chr5 112318606 112318640 -40218619 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 5 1441 279 267 123 23 chr5 112318654 112318818 -40218441 + MIRb SINE MIR 46 234 -34 5 1441 186 277 88 48 chr5 112318861 112318986 -40218273 - MIRb SINE MIR -11 257 128 5 1441 466 158 0 0 chr5 112318986 112319062 -40218197 + B3 SINE B2 1 76 -140 5 1441 707 149 67 0 chr5 112319108 112319242 -40218017 - B3 SINE B2 -5 211 69 5 1441 287 232 0 0 chr5 112319397 112319453 -40217806 + (CCCA)n Simple_repeat Simple_repeat 1 56 0 5 1441 835 177 3 9 chr5 112319453 112319773 -40217486 + (TCCA)n Simple_repeat Simple_repeat 1 317 0 5 1441 296 180 0 0 chr5 112320231 112320281 -40216978 + MIR SINE MIR 108 157 -105 5 1441 297 208 0 0 chr5 112320669 112320741 -40216518 + (CA)n Simple_repeat Simple_repeat 1 72 0 5 1441 303 284 31 0 chr5 112321175 112321302 -40215957 + (TCTG)n Simple_repeat Simple_repeat 4 134 0 5 1441 380 314 6 0 chr5 112321273 112321445 -40215814 + (TG)n Simple_repeat Simple_repeat 2 174 0 5 1441 201 243 0 0 chr5 112321474 112321581 -40215678 + (TG)n Simple_repeat Simple_repeat 2 108 0 5 1441 180 158 0 0 chr5 112321640 112321678 -40215581 + (TATG)n Simple_repeat Simple_repeat 3 40 0 5 1441 454 311 0 6 chr5 112321680 112321907 -40215352 + (TG)n Simple_repeat Simple_repeat 1 225 0 5 1441 234 0 0 0 chr5 112321991 112322017 -40215242 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 5 1441 374 309 6 29 chr5 112323586 112323806 -40213453 + (TCCA)n Simple_repeat Simple_repeat 1 214 0 5 1441 229 301 0 46 chr5 112323727 112323835 -40213424 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 5 1441 272 135 0 103 chr5 112324289 112324347 -40212912 + B1F SINE Alu 88 139 -10 5 1441 369 332 123 38 chr5 112325099 112325334 -40211925 + B4 SINE B4 36 290 -2 5 1441 276 53 0 0 chr5 112325682 112325720 -40211539 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1441 329 291 152 8 chr5 112325774 112325892 -40211367 - B1F SINE Alu -12 137 3 5 1441 317 312 0 0 chr5 112325987 112326067 -40211192 - ID2 SINE ID -2 81 2 5 1441 228 255 0 0 chr5 112326256 112326307 -40210952 + ID2 SINE ID 27 77 -6 5 1441 243 273 92 92 chr5 112326327 112326480 -40210779 - MER20B DNA MER1_type -630 153 1 5 1441 305 19 55 18 chr5 112326959 112327014 -40210245 + (CAAAA)n Simple_repeat Simple_repeat 4 60 0 5 1441 252 154 0 37 chr5 112328357 112328411 -40208848 - MIRc SINE MIR -133 135 84 5 1441 450 0 0 0 chr5 112328529 112328579 -40208680 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1442 229 197 14 14 chr5 112329830 112329902 -40207357 + CT-rich Low_complexity Low_complexity 3 74 0 5 1442 269 333 0 52 chr5 112331034 112331189 -40206070 + CT-rich Low_complexity Low_complexity 1 147 0 5 1442 405 0 0 0 chr5 112332546 112332591 -40204668 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1442 441 0 0 0 chr5 112333038 112333087 -40204172 + (TCC)n Simple_repeat Simple_repeat 3 51 0 5 1442 271 212 25 0 chr5 112333090 112333170 -40204089 + (CCA)n Simple_repeat Simple_repeat 2 83 0 5 1442 364 240 11 33 chr5 112333716 112333897 -40203362 + C-rich Low_complexity Low_complexity 2 178 0 5 1442 1333 189 156 9 chr5 112333922 112334242 -40203017 - ORR1D1 LTR MaLR -7 367 1 5 1442 920 146 109 0 chr5 112334243 112334435 -40202824 - ORR1D1-int LTR MaLR -16 1354 1142 5 1442 467 246 39 16 chr5 112334436 112334564 -40202695 + MTC LTR MaLR 1 131 -290 5 1442 780 160 0 0 chr5 112334495 112334620 -40202639 - MTC LTR MaLR -296 125 1 5 1442 5334 202 44 18 chr5 112334624 112334877 -40202382 - MTC-int LTR MaLR -4 1254 1011 5 1442 216 0 0 0 chr5 112334877 112334901 -40202358 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 5 1442 5334 202 44 18 chr5 112334901 112335852 -40201407 - MTC-int LTR MaLR -248 1010 20 5 1442 1274 186 9 4 chr5 112335856 112336088 -40201171 + MTC LTR MaLR 60 292 -129 5 1442 293 273 0 0 chr5 112336221 112336298 -40200961 + PB1D10 SINE Alu 10 86 -31 5 1442 488 254 8 56 chr5 112337608 112337733 -40199526 - RSINE1 SINE B4 -36 129 11 5 1442 267 300 108 76 chr5 112339021 112339205 -40198054 + B4A SINE B4 84 275 -17 5 1442 261 0 0 0 chr5 112339613 112339642 -40197617 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1442 1298 237 62 23 chr5 112340496 112340850 -40196409 - MTEa LTR MaLR -11 368 1 5 1442 313 207 54 65 chr5 112343278 112343298 -40193961 - PB1D10 SINE Alu -5 112 93 5 1442 474 18 0 0 chr5 112343298 112343353 -40193906 + (TC)n Simple_repeat Simple_repeat 2 56 0 5 1442 387 0 0 0 chr5 112343353 112343395 -40193864 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1442 313 207 54 65 chr5 112343395 112343466 -40193793 - PB1D10 SINE Alu -25 92 22 5 1442 516 81 0 0 chr5 112344899 112344973 -40192286 + (GGGGA)n Simple_repeat Simple_repeat 5 78 0 5 1442 355 239 9 9 chr5 112346231 112346341 -40190918 + (TATATG)n Simple_repeat Simple_repeat 1 110 0 5 1442 203 371 26 19 chr5 112346416 112346570 -40190689 - MIRc SINE MIR -79 189 35 5 1442 261 232 0 0 chr5 112348770 112348839 -40188420 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1442 220 304 77 19 chr5 112348912 112349016 -40188243 + MIR SINE MIR 150 259 -3 5 1442 432 0 0 0 chr5 112349258 112349306 -40187953 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1442 473 310 7 40 chr5 112350011 112350162 -40187097 - RSINE1 SINE B4 -2 163 18 5 1442 190 299 120 45 chr5 112350187 112350320 -40186939 - MIR3 SINE MIR -49 159 17 5 1442 1239 90 11 0 chr5 112351216 112351393 -40185866 + B2_Mm1t SINE B2 1 179 -14 5 1442 333 152 0 6 chr5 112351459 112351524 -40185735 + B2_Mm2 SINE B2 47 109 -107 5 1442 180 0 0 0 chr5 112351539 112351559 -40185700 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 1442 592 286 27 5 chr5 112351570 112351756 -40185503 - B3A SINE B2 -7 191 2 5 1442 307 381 18 18 chr5 112351764 112351935 -40185324 + MIRb SINE MIR 78 248 -20 5 1442 204 289 0 0 chr5 112352961 112353013 -40184246 + L2a LINE L2 3354 3405 -21 5 1442 899 160 8 0 chr5 112353971 112354241 -40183018 + (TGGA)n Simple_repeat Simple_repeat 1 272 0 5 1442 706 157 7 7 chr5 112354257 112354398 -40182861 + (TGGA)n Simple_repeat Simple_repeat 4 144 0 5 1442 218 297 36 9 chr5 112354398 112354510 -40182749 + (TAGA)n Simple_repeat Simple_repeat 2 116 0 5 1442 345 47 0 0 chr5 112355431 112355474 -40181785 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1442 266 340 0 11 chr5 112355518 112355613 -40181646 + (TG)n Simple_repeat Simple_repeat 1 94 0 5 1442 347 325 58 8 chr5 112356635 112356756 -40180503 + B1F SINE Alu 1 127 -22 5 1442 279 184 0 0 chr5 112356723 112356772 -40180487 + B1_Mm SINE Alu 64 112 -35 5 1442 242 220 172 60 chr5 112356766 112356882 -40180377 + B1F SINE Alu 21 149 0 5 1442 2943 80 15 2 chr5 112357437 112357839 -40179420 - MTB_Mm LTR MaLR 0 407 1 5 1442 180 0 0 0 chr5 112359217 112359237 -40178022 + (ACTG)n Simple_repeat Simple_repeat 4 23 0 5 1442 300 27 0 0 chr5 112360129 112360166 -40177093 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1442 570 159 0 0 chr5 112360166 112360292 -40176967 + GA-rich Low_complexity Low_complexity 2 127 0 5 1442 658 210 0 7 chr5 112360295 112360597 -40176662 + (TG)n Simple_repeat Simple_repeat 1 299 0 5 1442 514 181 0 21 chr5 112360597 112360693 -40176566 - B1F2 SINE Alu -27 122 29 5 1442 201 361 101 9 chr5 112360970 112361079 -40176180 + MIR SINE MIR 43 161 -101 5 1442 362 269 241 10 chr5 112361637 112361840 -40175419 - RMER15 LTR ERVL -2 573 324 5 1442 307 255 111 41 chr5 112361831 112362003 -40175256 - RMER15 LTR ERVL -386 189 6 5 1442 581 204 12 12 chr5 112362889 112363058 -40174201 + CT-rich Low_complexity Low_complexity 1 169 0 5 1442 233 208 0 50 chr5 112363105 112363206 -40174053 + CT-rich Low_complexity Low_complexity 4 99 0 5 1442 2226 83 3 60 chr5 112365194 112365541 -40171718 - ORR1A2 LTR MaLR 0 327 1 5 1442 2796 170 70 44 chr5 112366052 112366818 -40170441 - RMER13B LTR ERVK -1 907 1 5 1442 470 265 139 49 chr5 112367456 112367722 -40169537 + B4 SINE B4 3 292 0 6 1442 250 235 26 32 chr5 112367723 112367877 -40169382 + (CATA)n Simple_repeat Simple_repeat 2 154 0 6 1442 228 329 0 0 chr5 112367952 112368089 -40169170 + (CA)n Simple_repeat Simple_repeat 2 138 0 6 1442 190 256 0 0 chr5 112368188 112368227 -40169032 + L2c LINE L2 3344 3382 -5 6 1442 972 26 0 0 chr5 112368423 112368538 -40168721 + (TCTCCC)n Simple_repeat Simple_repeat 6 120 0 6 1442 274 250 178 22 chr5 112368568 112368748 -40168511 - MIR3 SINE MIR 0 208 1 6 1442 2847 64 17 53 chr5 112368774 112369189 -40168070 - MTB LTR MaLR 0 400 1 6 1442 1106 139 51 5 chr5 112369632 112369827 -40167432 - MTC LTR MaLR -8 413 210 6 1442 551 257 21 98 chr5 112369801 112369995 -40167264 + MT2B LTR ERVL 349 527 -74 6 1442 598 178 29 17 chr5 112370004 112370176 -40167083 + (TATATG)n Simple_repeat Simple_repeat 1 174 0 6 1442 842 151 5 27 chr5 112370158 112370342 -40166917 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 1442 235 179 18 18 chr5 112370354 112370411 -40166848 + MLT2B1 LTR ERVL 511 567 0 6 1442 754 301 28 0 chr5 112370512 112370728 -40166531 - ID_B1 SINE B4 -1 223 2 6 1442 258 262 27 27 chr5 112371498 112371608 -40165651 + CT-rich Low_complexity Low_complexity 4 113 0 6 1442 253 275 129 21 chr5 112372022 112372115 -40165144 + PB1D10 SINE Alu 2 104 -13 6 1442 201 222 0 0 chr5 112373276 112373312 -40163947 + polypyrimidine Low_complexity Low_complexity 2 37 0 6 1442 360 0 0 0 chr5 112373845 112373885 -40163374 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1442 197 216 67 13 chr5 112374808 112374883 -40162376 - MIRc SINE MIR -123 145 67 6 1442 233 316 74 43 chr5 112374931 112375093 -40162166 - MER5A DNA MER1_type -18 171 5 6 1442 246 241 17 69 chr5 112375831 112375947 -40161312 + CT-rich Low_complexity Low_complexity 1 110 0 6 1442 207 69 0 0 chr5 112375993 112376022 -40161237 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1442 484 287 22 0 chr5 112376301 112376437 -40160822 + ORR1D2 LTR MaLR 1 139 -231 6 1442 234 164 109 0 chr5 112376490 112376545 -40160714 + Lx9 LINE L1 7008 7068 -576 6 1442 1973 58 0 0 chr5 112376548 112376809 -40160450 + RLTR10A LTR ERVK 1 261 -150 6 1442 950 77 0 0 chr5 112376796 112376926 -40160333 + RLTR27 LTR ERVK 179 308 -1 6 1442 352 78 39 0 chr5 112376951 112377002 -40160257 + MMERVK10C-int LTR ERVK 210 262 -7319 6 1442 782 76 34 45 chr5 112377102 112377123 -40160136 + polypurine Low_complexity Low_complexity 3 25 0 6 1442 929 28 0 102 chr5 112377123 112377319 -40159940 + (GGAAA)n Simple_repeat Simple_repeat 2 177 0 6 1442 782 69 85 34 chr5 112377319 112377583 -40159676 + GA-rich Low_complexity Low_complexity 1 277 0 6 1442 562 106 0 23 chr5 112377583 112377670 -40159589 + IAP-d-int LTR ERVK 93 177 -6365 6 1442 728 206 13 0 chr5 112377664 112377819 -40159440 + IAP-d-int LTR ERVK 347 503 -6039 6 1442 3242 52 128 19 chr5 112377819 112378289 -40158970 + IAP-d-int LTR ERVK 5007 5527 -1015 6 1442 4741 84 25 16 chr5 112378335 112379028 -40158231 + RLTR10-int LTR ERVK 1288 1986 -1 6 1442 2114 80 134 35 chr5 112379028 112379402 -40157857 + RLTR10A LTR ERVK 1 411 0 6 1442 1207 225 231 9 chr5 112379402 112379748 -40157511 + Lx9 LINE L1 7066 7477 -167 6 1442 281 89 22 0 chr5 112379748 112379793 -40157466 + (CATA)n Simple_repeat Simple_repeat 2 47 0 6 1442 1207 225 231 9 chr5 112379793 112379913 -40157346 + Lx9 LINE L1 7478 7635 -9 6 1442 406 302 27 81 chr5 112379913 112380136 -40157123 + RCHARR1 DNA MER1_type 653 863 -111 6 1442 228 35 0 0 chr5 112380136 112380165 -40157094 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 6 1442 908 155 42 0 chr5 112380184 112380352 -40156907 + ORR1D2 LTR MaLR 195 369 -1 6 1442 537 179 17 34 chr5 112380448 112380627 -40156632 + GA-rich Low_complexity Low_complexity 3 178 0 6 1442 307 216 16 31 chr5 112380652 112380781 -40156478 + GA-rich Low_complexity Low_complexity 3 129 0 6 1442 249 298 151 23 chr5 112380789 112380875 -40156384 - MIRm SINE MIR -141 135 39 6 1442 395 308 104 61 chr5 112381708 112381988 -40155271 + B4A SINE B4 1 292 0 6 1442 228 200 0 0 chr5 112381999 112382059 -40155200 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1442 230 167 0 16 chr5 112382124 112382185 -40155074 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1442 191 102 0 75 chr5 112382282 112382335 -40154924 + (TCTCTG)n Simple_repeat Simple_repeat 6 54 0 6 1442 213 205 0 0 chr5 112382347 112382386 -40154873 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1442 234 180 0 0 chr5 112382391 112382452 -40154807 + CT-rich Low_complexity Low_complexity 1 61 0 6 1442 433 131 37 30 chr5 112382494 112382628 -40154631 + (TCTCTG)n Simple_repeat Simple_repeat 4 138 0 6 1442 408 125 0 0 chr5 112382639 112382703 -40154556 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1442 777 231 190 23 chr5 112383469 112383774 -40153485 - MTD LTR MaLR -58 361 6 6 1442 1451 310 77 74 chr5 112383855 112384772 -40152487 - MT-int LTR MaLR -134 964 45 6 1442 396 358 98 49 chr5 112385542 112386009 -40151250 + MER20B DNA MER1_type 244 733 -50 6 1442 312 323 54 0 chr5 112386517 112386610 -40150649 + PB1D10 SINE Alu 12 109 -8 6 1442 678 13 0 0 chr5 112387707 112387786 -40149473 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1442 533 179 0 6 chr5 112387802 112387965 -40149294 + GA-rich Low_complexity Low_complexity 1 162 0 6 1442 219 171 0 0 chr5 112388396 112388431 -40148828 - MIRc SINE MIR -117 151 117 6 1442 15506 52 2 3 chr5 112388469 112391183 -40146076 - L1Md_F2 LINE L1 -12 6570 3860 6 1442 183 292 21 0 chr5 112391878 112391926 -40145333 - MIR SINE MIR -130 132 84 6 1442 597 215 0 0 chr5 112391988 112392137 -40145122 + (CA)n Simple_repeat Simple_repeat 1 149 0 6 1442 1118 66 0 7 chr5 112392596 112392749 -40144510 + (TCC)n Simple_repeat Simple_repeat 3 154 0 6 1442 201 337 54 11 chr5 112392749 112392842 -40144417 + L2b LINE L2 3138 3234 -141 6 1442 198 0 0 0 chr5 112392884 112392906 -40144353 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 6 1442 335 252 9 0 chr5 112393029 112393140 -40144119 + (TG)n Simple_repeat Simple_repeat 1 112 0 6 1442 694 196 0 22 chr5 112393117 112393300 -40143959 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 6 1442 771 165 17 0 chr5 112393261 112393437 -40143822 + (TATG)n Simple_repeat Simple_repeat 1 179 0 6 1442 289 170 0 0 chr5 112393437 112393484 -40143775 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1442 697 181 32 5 chr5 112393484 112393660 -40143599 - MT2A LTR ERVL -61 540 347 6 1442 3085 176 34 19 chr5 112393675 112394266 -40142993 - MERVL_2A-int LTR ERVL -3210 2551 1952 6 1442 198 311 0 109 chr5 112394390 112394491 -40142768 + L2b LINE L2 3294 3383 -4 6 1442 272 352 21 7 chr5 112394740 112394880 -40142379 + (TGGA)n Simple_repeat Simple_repeat 3 144 0 6 1442 222 171 0 0 chr5 112394887 112394928 -40142331 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 6 1442 551 245 67 25 chr5 112395170 112395462 -40141797 + RMER15 LTR ERVL 7 428 -147 6 1442 232 295 51 0 chr5 112396613 112396691 -40140568 + MIRm SINE MIR 41 122 -154 6 1442 466 287 151 0 chr5 112397933 112398085 -40139174 - MER58A DNA MER1_type -2131 289 1 6 1442 589 283 52 58 chr5 112398683 112398815 -40138444 + B3 SINE B2 14 143 -73 6 1442 306 0 0 0 chr5 112398815 112398849 -40138410 + (TAGA)n Simple_repeat Simple_repeat 2 35 0 6 1442 589 283 52 58 chr5 112398849 112398907 -40138352 + B3 SINE B2 144 203 -13 6 1442 240 184 0 0 chr5 112398911 112398960 -40138299 + (TA)n Simple_repeat Simple_repeat 2 50 0 6 1442 495 48 0 0 chr5 112398962 112399024 -40138235 + (CA)n Simple_repeat Simple_repeat 2 63 0 6 1442 231 170 41 31 chr5 112399096 112399193 -40138066 + CT-rich Low_complexity Low_complexity 3 100 0 6 1442 239 303 54 43 chr5 112399392 112399485 -40137774 + MLT1C LTR MaLR 358 451 -16 6 1442 1273 32 13 0 chr5 112400528 112400686 -40136573 + L1Md_F3 LINE L1 6410 6569 -15 6 1442 371 286 159 45 chr5 112401359 112401579 -40135680 + MTEa LTR MaLR 1 245 -134 6 1442 704 205 6 0 chr5 112401888 112402054 -40135205 + CT-rich Low_complexity Low_complexity 2 168 0 6 1442 264 132 0 0 chr5 112402054 112402092 -40135167 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1442 375 23 0 0 chr5 112402885 112402929 -40134330 + (TAA)n Simple_repeat Simple_repeat 2 45 0 6 1442 551 302 13 2 chr5 112403001 112403227 -40134032 + (CCCA)n Simple_repeat Simple_repeat 1 228 0 6 1442 959 139 0 6 chr5 112403227 112403408 -40133851 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 6 1442 551 257 0 6 chr5 112403408 112403504 -40133755 + (CCCA)n Simple_repeat Simple_repeat 1 95 0 6 1442 913 160 14 14 chr5 112403460 112403749 -40133510 + (TCCA)n Simple_repeat Simple_repeat 1 289 0 6 1442 202 270 108 103 chr5 112403944 112404138 -40133121 - L2b LINE L2 -215 3160 2966 6 1442 1024 194 23 51 chr5 112404267 112404484 -40132775 + B3 SINE B2 2 212 -4 6 1442 450 312 28 61 chr5 112405088 112405269 -40131990 + B4A SINE B4 58 232 -60 6 1442 2883 31 2 169 chr5 112405281 112405747 -40131512 - RLTR10 LTR ERVK -2 388 1 6 1442 14333 20 58 71 chr5 112405749 112407757 -40129502 - RLTR10-int LTR ERVK -3 1984 3 6 1442 2789 39 2 199 chr5 112407761 112408244 -40129015 - RLTR10 LTR ERVK -2 388 1 6 1442 482 317 0 32 chr5 112408278 112408464 -40128795 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1442 446 328 17 0 chr5 112408476 112408653 -40128606 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1442 201 302 43 78 chr5 112409137 112409252 -40128007 - MER5B DNA MER1_type -11 167 57 6 1442 555 127 0 0 chr5 112409821 112409929 -40127330 + ORR1A2 LTR MaLR 1 108 -238 6 1442 1872 118 42 21 chr5 112409929 112410318 -40126941 + ORR1A2 LTR MaLR 1 392 -2 6 1442 185 303 22 0 chr5 112411174 112411263 -40125996 + L2b LINE L2 3096 3186 -189 6 1442 294 29 0 0 chr5 112411767 112411802 -40125457 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1442 480 62 0 0 chr5 112411802 112411866 -40125393 + (GA)n Simple_repeat Simple_repeat 1 64 0 6 1442 235 319 0 0 chr5 112412343 112412415 -40124844 + L2c LINE L2 3041 3112 -275 6 1442 1794 122 68 20 chr5 112412417 112412711 -40124548 + MTC LTR MaLR 1 308 -113 6 1442 342 67 0 0 chr5 112412714 112412759 -40124500 + (CATA)n Simple_repeat Simple_repeat 2 46 0 6 1442 180 200 0 0 chr5 112412771 112412811 -40124448 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 6 1442 351 121 0 0 chr5 112412893 112412951 -40124308 + (TATG)n Simple_repeat Simple_repeat 1 58 0 6 1442 201 195 0 0 chr5 112413020 112413061 -40124198 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 6 1442 440 222 20 20 chr5 112413065 112413166 -40124093 + MTC LTR MaLR 316 416 -3 6 1442 703 324 37 12 chr5 112413666 112413907 -40123352 - MLT1J1 LTR MaLR -146 298 52 7 1442 361 133 24 12 chr5 112414134 112414218 -40123041 + (TATG)n Simple_repeat Simple_repeat 1 85 0 7 1442 183 162 0 0 chr5 112414211 112414248 -40123011 + (TGGA)n Simple_repeat Simple_repeat 4 40 0 7 1442 636 214 3 11 chr5 112414258 112414644 -40122615 + (TATG)n Simple_repeat Simple_repeat 1 382 0 7 1442 204 125 0 0 chr5 112414702 112414734 -40122525 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 7 1442 243 0 0 0 chr5 112414734 112414761 -40122498 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 1442 338 277 7 0 chr5 112414814 112414955 -40122304 + GA-rich Low_complexity Low_complexity 2 143 0 7 1442 190 250 21 0 chr5 112416075 112416123 -40121136 + MIR SINE MIR 93 141 -67 7 1442 317 82 0 20 chr5 112416986 112417036 -40120223 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1442 443 276 121 8 chr5 112417076 112417200 -40120059 + B4 SINE B4 155 292 0 7 1442 180 182 0 0 chr5 112417203 112417247 -40120012 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1442 241 331 122 32 chr5 112417301 112417457 -40119802 - L2a LINE L2 -253 3173 3004 7 1442 435 112 71 53 chr5 112417603 112417772 -40119487 + (TATATG)n Simple_repeat Simple_repeat 6 177 0 7 1442 1437 298 163 8 chr5 112417833 112418483 -40118776 - Lx9 LINE L1 -465 7179 6429 7 1442 361 277 53 29 chr5 112418521 112418692 -40118567 + Lx9 LINE L1 7257 7431 -213 7 1442 205 128 21 21 chr5 112418693 112418741 -40118518 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 7 1442 427 0 0 19 chr5 112418741 112418793 -40118466 + MTA_Mm LTR MaLR 1 51 -345 7 1442 1873 47 4 0 chr5 112418772 112419005 -40118254 + MTA_Mm LTR MaLR 163 396 0 7 1442 600 156 41 29 chr5 112419034 112419381 -40117878 + (CATATA)n Simple_repeat Simple_repeat 1 351 0 7 1442 1321 214 150 25 chr5 112419421 112419780 -40117479 - MTD LTR MaLR -15 404 1 7 1442 265 285 138 53 chr5 112420179 112420331 -40116928 - MIRm SINE MIR -102 174 10 7 1442 287 257 0 0 chr5 112420907 112420981 -40116278 + L1M5 LINE L1 5535 5608 -565 7 1442 578 314 111 15 chr5 112420981 112421243 -40116016 + B4A SINE B4 2 288 -4 7 1442 393 322 0 37 chr5 112421253 112421440 -40115819 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1442 201 121 0 0 chr5 112421558 112421591 -40115668 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1442 459 0 0 0 chr5 112421687 112421738 -40115521 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1442 432 0 0 0 chr5 112421738 112421785 -40115474 + (GA)n Simple_repeat Simple_repeat 2 49 0 7 1442 250 300 133 0 chr5 112422133 112422223 -40115036 - MLT1J LTR MaLR -309 203 102 7 1442 769 296 106 32 chr5 112422304 112422615 -40114644 + MTEa LTR MaLR 1 334 -45 7 1442 370 269 112 9 chr5 112422641 112422757 -40114502 + MTE-int LTR MaLR 1 128 -1452 7 1442 256 275 49 69 chr5 112423060 112423190 -40114069 - MLT1J LTR MaLR -351 161 4 7 1442 207 154 19 19 chr5 112424350 112424403 -40112856 + (TAA)n Simple_repeat Simple_repeat 3 55 0 7 1442 240 35 0 0 chr5 112424403 112424432 -40112827 + (CTA)n Simple_repeat Simple_repeat 1 29 0 7 1442 396 181 0 0 chr5 112425141 112425224 -40112035 + CT-rich Low_complexity Low_complexity 4 86 0 7 1442 218 158 193 0 chr5 112425370 112425427 -40111832 + MIRb SINE MIR 120 187 -81 7 1442 285 225 0 0 chr5 112425501 112425590 -40111669 + (CACCAT)n Simple_repeat Simple_repeat 4 92 0 7 1442 406 226 7 26 chr5 112426377 112426838 -40110421 + (CA)n Simple_repeat Simple_repeat 1 451 0 7 1442 688 228 0 0 chr5 112427159 112427286 -40109973 + RSINE1 SINE B4 11 137 -28 7 1442 388 250 10 29 chr5 112427587 112427690 -40109569 + MTC-int LTR MaLR 1158 1258 0 7 1442 1856 129 52 112 chr5 112427704 112428071 -40109188 - ORR1A1 LTR MaLR -1 345 1 7 1442 1751 173 100 54 chr5 112428074 112428465 -40108794 + MTD LTR MaLR 11 419 0 7 1442 308 248 39 93 chr5 112428573 112428702 -40108557 - RMER15 LTR ERVL -43 532 411 7 1442 180 0 0 0 chr5 112428702 112428722 -40108537 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1442 314 313 23 63 chr5 112428931 112429105 -40108154 + MTEb LTR MaLR 212 378 -1 7 1442 225 0 0 0 chr5 112430507 112430532 -40106727 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1442 324 245 39 10 chr5 112432384 112432487 -40104772 + L1MA4 LINE L1 5806 5911 -389 7 1442 549 247 0 0 chr5 112432504 112432781 -40104478 + (TG)n Simple_repeat Simple_repeat 1 277 0 7 1442 677 212 6 0 chr5 112432796 112432975 -40104284 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1442 534 270 0 0 chr5 112432947 112433125 -40104134 + (TATG)n Simple_repeat Simple_repeat 1 178 0 7 1442 1150 52 7 0 chr5 112433771 112433906 -40103353 - B1_Mm SINE Alu -9 138 3 7 1442 381 155 14 14 chr5 112434220 112434292 -40102967 + MTD LTR MaLR 1 72 -347 7 1442 241 250 0 42 chr5 112434305 112434376 -40102883 + PB1D9 SINE Alu 52 119 -1 7 1442 810 153 11 6 chr5 112434376 112434554 -40102705 + GA-rich Low_complexity Low_complexity 1 179 0 7 1442 1022 162 322 10 chr5 112434564 112434843 -40102416 + MTD LTR MaLR 47 421 0 7 1442 674 219 64 50 chr5 112435892 112436094 -40101165 + Lx8 LINE L1 6421 6625 -848 7 1442 1257 288 127 78 chr5 112436556 112437369 -40099890 + Lx8 LINE L1 6612 7464 -9 7 1442 733 268 56 22 chr5 112437446 112437713 -40099546 + B4 SINE B4 2 277 -15 7 1442 490 98 24 0 chr5 112437718 112437800 -40099459 + (CA)n Simple_repeat Simple_repeat 1 84 0 7 1442 590 143 0 9 chr5 112438057 112438146 -40099113 + polypurine Low_complexity Low_complexity 5 93 0 7 1442 1494 33 0 0 chr5 112438146 112438326 -40098933 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 7 1442 590 143 0 9 chr5 112438326 112438342 -40098917 + polypurine Low_complexity Low_complexity 94 109 0 7 1442 256 372 11 0 chr5 112440545 112440639 -40096620 - MLT1D LTR MaLR -9 496 402 7 1442 924 128 0 0 chr5 112440752 112440980 -40096279 + (GA)n Simple_repeat Simple_repeat 1 228 0 7 1442 683 44 0 11 chr5 112440980 112441072 -40096187 + (GAA)n Simple_repeat Simple_repeat 2 92 0 7 1442 328 252 168 15 chr5 112441157 112441294 -40095965 + ORR1C1 LTR MaLR 24 181 -197 7 1442 251 276 29 26 chr5 112442620 112442696 -40094563 + MIRc SINE MIR 55 131 -145 7 1442 220 139 0 0 chr5 112443118 112443160 -40094099 - MIRc SINE MIR -125 151 110 7 1442 23 0 0 0 chr5 112443590 112443613 -40093646 + AT_rich Low_complexity Low_complexity 1 23 0 7 1442 969 210 66 5 chr5 112443625 112443821 -40093438 + B3 SINE B2 3 210 -6 7 1442 21 36 0 0 chr5 112443823 112443851 -40093408 + AT_rich Low_complexity Low_complexity 1 28 0 7 1442 448 352 155 4 chr5 112443852 112444097 -40093162 - B4A SINE B4 -5 287 6 7 1442 292 284 190 0 chr5 112445386 112445502 -40091757 - B4 SINE B4 -153 139 2 7 1442 288 264 0 54 chr5 112445594 112445686 -40091573 + PB1D10 SINE Alu 18 104 -13 7 1442 21 0 0 0 chr5 112445764 112445785 -40091474 + AT_rich Low_complexity Low_complexity 1 21 0 7 1442 958 91 0 0 chr5 112446194 112446326 -40090933 + ORR1A3 LTR MaLR 194 325 -1 7 1442 1724 185 100 5 chr5 112447010 112447379 -40089880 + MTC LTR MaLR 5 408 -13 7 1442 5267 180 70 22 chr5 112447384 112448585 -40088674 + MTC-int LTR MaLR 1 1258 0 7 1442 2211 147 23 16 chr5 112448585 112448973 -40088286 + MTC LTR MaLR 1 391 -30 7 1442 261 0 0 0 chr5 112449460 112449489 -40087770 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1442 705 24 0 0 chr5 112449604 112449687 -40087572 + (TCC)n Simple_repeat Simple_repeat 2 84 0 7 1442 576 240 23 0 chr5 112450787 112450952 -40086307 - B4A SINE B4 -2 290 25 7 1442 538 206 43 13 chr5 112451010 112451364 -40085895 + CT-rich Low_complexity Low_complexity 1 364 0 7 1442 8241 25 0 0 chr5 112451374 112452745 -40084514 - L1Md_T LINE L1 -1 6581 5211 7 1442 5278 112 88 7 chr5 112453562 112454448 -40082811 - RMER17B LTR ERVK 0 958 1 7 1442 205 273 90 10 chr5 112455519 112455619 -40081640 - MIR SINE MIR -122 140 33 7 1442 1182 106 5 42 chr5 112455619 112456041 -40081218 + (CCCCAG)n Simple_repeat Simple_repeat 1 406 0 7 1442 361 271 33 105 chr5 112456078 112456141 -40081118 + B2_Mm2 SINE B2 1 62 -133 7 1442 1244 96 23 0 chr5 112456141 112456318 -40080941 + B2_Mm2 SINE B2 1 181 -14 7 1442 361 271 33 105 chr5 112456318 112456464 -40080795 + B2_Mm2 SINE B2 63 195 0 7 1442 592 267 34 0 chr5 112456474 112456620 -40080639 + B3A SINE B2 48 198 0 7 1442 183 80 0 0 chr5 112457040 112457065 -40080194 + (CCCCCT)n Simple_repeat Simple_repeat 4 28 0 7 1442 397 329 38 12 chr5 112457486 112457646 -40079613 + RSINE1 SINE B4 2 165 0 7 1442 492 211 25 76 chr5 112459623 112459741 -40077518 - PB1D9 SINE Alu 0 120 9 7 180 284 290 0 115 chr5 112459666 112459779 -40077480 - MT2B LTR ERVL -360 241 142 7 180 707 272 20 56 chr5 112459757 112459952 -40077307 - B3A SINE B2 0 198 11 7 1443 1050 81 0 0 chr5 112460048 112460184 -40077075 + B1_Mus1 SINE Alu 2 137 -11 7 1443 261 0 0 0 chr5 112460187 112460216 -40077043 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 7 1443 487 121 0 62 chr5 112460886 112460983 -40076276 + ORR1A2 LTR MaLR 1 91 -236 7 1443 279 181 0 48 chr5 112460996 112461093 -40076166 + ORR1A2 LTR MaLR 41 122 -272 7 1443 308 198 0 34 chr5 112461073 112461162 -40076097 + ORR1A2 LTR MaLR 65 150 -244 7 1443 287 186 0 19 chr5 112461162 112461266 -40075993 + ORR1B1 LTR MaLR 41 141 -253 7 1443 233 169 0 17 chr5 112461242 112461302 -40075957 + ORR1B1 LTR MaLR 82 140 -254 7 1443 320 105 55 74 chr5 112461302 112461436 -40075823 + ORR1B2 LTR MaLR 1 117 -277 7 1443 1953 101 3 13 chr5 112461440 112461742 -40075517 + ORR1A2 LTR MaLR 29 327 0 7 1443 288 0 0 0 chr5 112462681 112462713 -40074546 + (GA)n Simple_repeat Simple_repeat 2 33 0 7 1443 828 94 0 0 chr5 112463793 112463910 -40073349 + B2_Mm2 SINE B2 2 118 -77 7 1443 309 26 0 0 chr5 112463915 112463953 -40073306 + (CATA)n Simple_repeat Simple_repeat 2 39 0 7 1443 378 224 0 34 chr5 112464293 112464381 -40072878 + MER20 DNA MER1_type 1 85 -134 7 1443 408 302 32 91 chr5 112465014 112465323 -40071936 + ORR1E LTR MaLR 22 312 -47 7 1443 389 185 5 0 chr5 112465380 112465463 -40071796 + PB1D10 SINE Alu 32 117 -32 7 1443 405 270 70 23 chr5 112467119 112467248 -40070011 + B1F1 SINE Alu 10 144 -5 7 1443 1145 104 6 6 chr5 112467303 112467477 -40069782 + B2_Mm2 SINE B2 5 178 -17 8 1443 266 245 144 19 chr5 112468039 112468143 -40069116 + MIRc SINE MIR 33 149 -119 8 1443 471 18 0 0 chr5 112468280 112468336 -40068923 + (TG)n Simple_repeat Simple_repeat 1 56 0 8 1443 21 0 0 0 chr5 112469134 112469155 -40068104 + AT_rich Low_complexity Low_complexity 1 21 0 8 1443 996 73 5 48 chr5 112472216 112472402 -40064857 + (GGGGA)n Simple_repeat Simple_repeat 2 179 0 8 1443 358 69 0 33 chr5 112472402 112472462 -40064797 + (GGAGA)n Simple_repeat Simple_repeat 1 58 0 8 1443 253 325 13 13 chr5 112472472 112472550 -40064709 + B4 SINE B4 215 292 0 8 1443 220 184 0 0 chr5 112472566 112472604 -40064655 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1443 1711 165 32 59 chr5 112472764 112473138 -40064121 + MTC LTR MaLR 58 421 0 8 1443 242 298 91 55 chr5 112473292 112473402 -40063857 + B4A SINE B4 179 292 0 8 1443 469 188 18 30 chr5 112473405 112473570 -40063689 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 8 1443 283 310 0 25 chr5 112473579 112473698 -40063561 + (CATA)n Simple_repeat Simple_repeat 1 116 0 8 1443 424 246 6 11 chr5 112473700 112473881 -40063378 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1443 251 342 36 36 chr5 112474417 112474611 -40062648 - MIR3 SINE MIR -10 198 5 8 1443 402 115 0 0 chr5 112476180 112476241 -40061018 + (TG)n Simple_repeat Simple_repeat 2 62 0 8 1443 197 196 0 19 chr5 112476321 112476373 -40060886 + CT-rich Low_complexity Low_complexity 3 53 0 8 1443 483 48 0 0 chr5 112476373 112476435 -40060824 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1443 378 0 0 0 chr5 112476435 112476476 -40060783 + (GA)n Simple_repeat Simple_repeat 1 42 0 8 1443 372 280 30 10 chr5 112476479 112476580 -40060679 - B1F1 SINE Alu -46 103 1 8 1443 27 29 0 0 chr5 112476584 112476618 -40060641 + AT_rich Low_complexity Low_complexity 1 34 0 8 1443 221 189 38 0 chr5 112476985 112477038 -40060221 + MIRm SINE MIR 115 169 -107 8 1443 287 220 193 83 chr5 112477263 112477372 -40059887 + MTE2b LTR MaLR 258 378 -1 8 1443 277 206 28 35 chr5 112478165 112478306 -40058953 + CT-rich Low_complexity Low_complexity 6 145 0 8 1443 275 349 123 65 chr5 112478344 112478564 -40058695 - MER74B LTR ERVL -95 527 299 8 1443 1970 193 17 19 chr5 112478564 112478981 -40058278 + MTD LTR MaLR 1 416 -3 8 1443 275 349 123 65 chr5 112478981 112479192 -40058067 - MER74B LTR ERVL -324 298 71 8 1443 578 39 13 0 chr5 112480223 112480300 -40056959 + (GA)n Simple_repeat Simple_repeat 1 78 0 8 1443 533 268 22 0 chr5 112480762 112480900 -40056359 + L1MA5 LINE L1 6160 6300 0 8 1443 333 162 0 0 chr5 112481618 112481686 -40055573 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 8 1443 300 319 26 86 chr5 112482522 112482673 -40054586 + MIR3 SINE MIR 48 189 -19 8 1443 454 221 226 21 chr5 112483164 112483354 -40053905 + MTEb LTR MaLR 127 355 -24 8 1443 459 0 0 0 chr5 112485488 112485539 -40051720 + (CTG)n Simple_repeat Simple_repeat 1 51 0 8 1443 1350 71 16 6 chr5 112486073 112486256 -40051003 + B2_Mm2 SINE B2 2 186 -9 8 1443 4667 49 2 2 chr5 112486556 112487145 -40050114 + L1_Mus1 LINE L1 5979 6567 0 8 1443 410 314 103 39 chr5 112487283 112487510 -40049749 + MLT1A LTR MaLR 86 328 -46 8 1443 180 0 0 0 chr5 112487510 112487530 -40049729 + (TA)n Simple_repeat Simple_repeat 2 21 0 8 1443 1290 139 153 40 chr5 112487696 112488050 -40049209 + ORR1A3 LTR MaLR 1 327 0 8 1443 441 238 20 10 chr5 112488053 112488155 -40049104 - ID_B1 SINE B4 -40 184 82 8 1443 336 266 0 0 chr5 112488263 112488372 -40048887 + (CA)n Simple_repeat Simple_repeat 1 109 0 8 1443 338 147 15 0 chr5 112488760 112488828 -40048431 + GA-rich Low_complexity Low_complexity 2 70 0 8 1443 455 97 0 0 chr5 112488848 112488910 -40048349 + ORR1A3 LTR MaLR 218 279 -47 8 1443 1116 133 0 0 chr5 112488913 112489093 -40048166 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 8 1443 1100 68 7 0 chr5 112489471 112489617 -40047642 + B1_Mm SINE Alu 1 147 0 8 1443 1522 286 50 31 chr5 112489648 112490262 -40046997 - L1M2 LINE L1 -859 5021 4380 8 1443 360 64 0 0 chr5 112490265 112490312 -40046947 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1443 225 0 0 0 chr5 112490312 112490336 -40046923 + (GA)n Simple_repeat Simple_repeat 1 25 0 8 1443 461 218 0 0 chr5 112490341 112490428 -40046831 + (TG)n Simple_repeat Simple_repeat 1 87 0 8 1443 570 223 0 32 chr5 112490429 112490614 -40046645 + (TATG)n Simple_repeat Simple_repeat 1 179 0 8 1443 255 273 0 0 chr5 112490620 112490675 -40046584 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1443 324 250 30 30 chr5 112490687 112490819 -40046440 - L1M2 LINE L1 -1538 4342 4211 8 1443 867 326 58 24 chr5 112490799 112491291 -40045968 + L1_Rod LINE L1 5022 5578 -308 8 1443 1168 87 0 0 chr5 112491294 112491455 -40045804 + B2_Mm2 SINE B2 1 161 -34 8 1443 270 0 0 0 chr5 112491455 112491485 -40045774 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 8 1443 523 250 140 30 chr5 112491533 112491768 -40045491 + Lx7 LINE L1 5634 5894 -1802 8 1443 234 174 0 0 chr5 112491998 112492044 -40045215 + (TA)n Simple_repeat Simple_repeat 2 47 0 8 1443 1179 22 0 0 chr5 112492249 112492388 -40044871 - B1_Mus1 SINE Alu -9 139 1 8 1443 1493 266 60 40 chr5 112492427 112492897 -40044362 + Lx8 LINE L1 6222 6700 -773 8 1443 310 232 33 70 chr5 112493140 112493293 -40043966 - L1MA5 LINE L1 -280 6020 5881 8 1443 573 307 18 12 chr5 112493411 112493579 -40043680 - B4A SINE B4 -113 179 11 8 1443 285 320 6 78 chr5 112494072 112494238 -40043021 + L1M5 LINE L1 3359 3512 -2634 8 1443 736 191 7 7 chr5 112494874 112495016 -40042243 - URR1B DNA MER1_type -1 224 83 8 1443 270 328 163 38 chr5 112495016 112495081 -40042178 + CYRA11_Mm Unknown Y-chromosome 169 401 -216 8 1443 261 0 0 0 chr5 112495083 112495112 -40042147 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1443 304 296 226 60 chr5 112495142 112495376 -40041883 - B4 SINE B4 -18 274 2 8 1443 410 122 27 0 chr5 112495381 112495455 -40041804 + (TTTC)n Simple_repeat Simple_repeat 4 79 0 8 1443 350 198 50 131 chr5 112495486 112495585 -40041674 - B1F SINE Alu -6 143 24 8 1443 375 41 0 0 chr5 112495893 112495942 -40041317 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1443 249 232 0 0 chr5 112496033 112496089 -40041170 + L1ME3B LINE L1 2443 2498 -3648 8 1443 311 324 82 82 chr5 112496248 112496527 -40040732 + L1ME3B LINE L1 2687 2965 -3181 8 1443 189 171 0 0 chr5 112496534 112496569 -40040690 + (TAG)n Simple_repeat Simple_repeat 1 35 0 8 1443 207 0 0 0 chr5 112496927 112496950 -40040309 + (CCCCCA)n Simple_repeat Simple_repeat 5 27 0 8 1443 355 293 193 4 chr5 112497317 112497560 -40039699 - B4A SINE B4 -2 290 2 8 1443 312 313 16 73 chr5 112497624 112497748 -40039511 + ORR1D2 LTR MaLR 50 166 -204 8 1443 342 0 0 0 chr5 112498184 112498222 -40039037 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1443 858 197 19 6 chr5 112498330 112498497 -40038762 + B3A SINE B2 1 168 -25 8 1443 450 0 0 0 chr5 112498497 112498547 -40038712 + (GA)n Simple_repeat Simple_repeat 1 50 0 8 1443 443 288 66 61 chr5 112498547 112498560 -40038699 + B2_Mm1t SINE B2 169 181 -12 8 1443 426 302 140 28 chr5 112498778 112499064 -40038195 + L1ME3B LINE L1 5552 5869 -371 8 1443 270 0 0 0 chr5 112499299 112499329 -40037930 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 8 1443 257 357 0 30 chr5 112499458 112499559 -40037700 - MER63D DNA AcHobo -694 367 270 8 1443 234 0 0 0 chr5 112500393 112500419 -40036840 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1443 590 245 116 0 chr5 112500465 112500612 -40036647 + RSINE1 SINE B4 2 165 0 2 1443 373 145 26 0 chr5 112500738 112500814 -40036445 + GA-rich Low_complexity Low_complexity 2 79 0 3 1443 389 322 86 70 chr5 112500814 112501058 -40036201 + L1M2 LINE L1 4149 4396 -1747 4 1443 601 285 49 41 chr5 112501095 112501340 -40035919 + B4A SINE B4 44 290 -2 5 1443 1280 138 4 55 chr5 112501437 112501546 -40035713 - URR1A DNA MER1_type 0 226 128 6 1443 1177 192 58 143 chr5 112501546 112501923 -40035336 + ORR1A1 LTR MaLR 1 345 -1 7 1443 1280 138 4 55 chr5 112501923 112502050 -40035209 - URR1A DNA MER1_type -99 127 2 6 1443 219 170 18 70 chr5 112502298 112502355 -40034904 + ID2 SINE ID 2 55 -28 8 1443 641 296 51 8 chr5 112502379 112502614 -40034645 + L1M2 LINE L1 4714 4958 -1185 4 1443 2646 136 11 9 chr5 112503002 112503441 -40033818 - Lx4B LINE L1 -618 6440 6001 9 1443 3211 124 35 18 chr5 112503436 112503944 -40033315 + Lx4B LINE L1 6448 6964 -94 9 1443 378 337 27 33 chr5 112504363 112504547 -40032712 - L1MA7 LINE L1 0 6291 6109 1 1443 767 296 60 62 chr5 112504623 112504976 -40032283 - L1MA7 LINE L1 -371 5920 5569 1 1443 304 145 40 0 chr5 112505110 112505186 -40032073 - Lx4B LINE L1 -4 7054 6976 1 1443 233 244 96 12 chr5 112505331 112505414 -40031845 - PB1D9 SINE Alu -20 100 11 1 1443 322 198 38 0 chr5 112505423 112505511 -40031748 + MIR SINE MIR 58 152 -116 1 1443 253 88 53 0 chr5 112505604 112505661 -40031598 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 1 1443 810 302 88 0 chr5 112506801 112507106 -40030153 - ORR1E LTR MaLR -2 357 26 1 1443 384 278 49 68 chr5 112507837 112507999 -40029260 + MTEb LTR MaLR 20 178 -201 1 1443 428 250 56 67 chr5 112508149 112508329 -40028930 + RMER15 LTR ERVL 33 210 -365 1 1443 3168 75 5 2 chr5 112508617 112509016 -40028243 - MTB LTR MaLR 0 400 1 1 1443 1514 135 14 0 chr5 112509919 112510141 -40027118 + URR1B DNA MER1_type 1 225 0 1 1443 180 319 124 16 chr5 112510334 112510455 -40026804 - MIR SINE MIR -85 177 44 2 1443 187 320 35 138 chr5 112511428 112511540 -40025719 + MIR3 SINE MIR 38 143 -65 2 1443 511 249 94 75 chr5 112511540 112511753 -40025506 + ID_B1 SINE B4 2 218 -6 2 1443 187 320 35 138 chr5 112511753 112511814 -40025445 + MIR3 SINE MIR 144 193 -15 2 1443 705 209 0 0 chr5 112512872 112513411 -40023848 + (CA)n Simple_repeat Simple_repeat 1 539 0 2 1443 552 200 0 0 chr5 112513428 112513598 -40023661 + (CA)n Simple_repeat Simple_repeat 1 170 0 2 1443 317 85 0 60 chr5 112513614 112513664 -40023595 + HAL1-3A_ME LINE L1 1976 2022 -836 2 1443 385 204 33 22 chr5 112513680 112513770 -40023489 + PB1D9 SINE Alu 28 118 -2 2 1443 1891 126 11 2 chr5 112513993 112514409 -40022850 - ORR1A2 LTR MaLR -1 393 1 2 1443 351 0 0 0 chr5 112514410 112514449 -40022810 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1443 299 236 7 52 chr5 112515105 112515380 -40021879 + (CA)n Simple_repeat Simple_repeat 1 262 0 2 1443 1825 115 32 27 chr5 112515445 112515834 -40021425 - ORR1A4 LTR MaLR -8 386 1 2 1443 241 193 17 17 chr5 112516288 112516346 -40020913 + ID4_ SINE ID 24 81 -2 3 1443 915 160 62 6 chr5 112516301 112516477 -40020782 + ID_B1 SINE B4 39 224 0 3 1443 779 196 15 82 chr5 112516962 112517157 -40020102 + ORR1D1 LTR MaLR 1 182 -192 3 1443 196 88 69 17 chr5 112517161 112517219 -40020040 + CT-rich Low_complexity Low_complexity 4 64 0 3 1443 281 158 0 95 chr5 112517219 112517271 -40019988 + ORR1C2 LTR MaLR 120 166 -212 3 1443 238 24 98 0 chr5 112517271 112517312 -40019947 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 3 1443 287 49 0 24 chr5 112517326 112517368 -40019891 + (TCCC)n Simple_repeat Simple_repeat 2 42 0 3 1443 878 181 87 10 chr5 112517368 112517563 -40019696 + ORR1C2 LTR MaLR 175 384 0 3 1443 1336 179 9 5 chr5 112518016 112518240 -40019019 + URR1B DNA MER1_type 1 225 0 3 1443 854 289 60 0 chr5 112518746 112518995 -40018264 + B4 SINE B4 29 292 0 3 1443 379 238 0 27 chr5 112519009 112519156 -40018103 + (CATA)n Simple_repeat Simple_repeat 4 146 0 3 1443 596 77 34 0 chr5 112519984 112520101 -40017158 + (GA)n Simple_repeat Simple_repeat 2 122 0 4 1443 184 159 250 0 chr5 112520820 112520864 -40016395 - MIRc SINE MIR -125 143 89 4 1443 249 182 325 0 chr5 112520955 112521032 -40016227 - MLT1A1 LTR MaLR 0 408 307 4 1443 438 20 0 0 chr5 112521127 112521178 -40016081 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1443 403 300 10 10 chr5 112521674 112521775 -40015484 + RSINE1 SINE B4 20 120 -45 4 1443 245 299 58 0 chr5 112521894 112521981 -40015278 - MLT1A1 LTR MaLR -349 118 27 4 1443 183 250 36 0 chr5 112522697 112522724 -40014535 + MIR SINE MIR 191 248 -14 4 1443 194 103 0 0 chr5 112522724 112522753 -40014506 + L2b LINE L2 3327 3355 -20 4 1443 1025 223 28 0 chr5 112523688 112523899 -40013360 - MTD LTR MaLR -190 229 13 4 1443 377 179 12 0 chr5 112523921 112524005 -40013254 + G-rich Low_complexity Low_complexity 4 88 0 4 1443 396 292 76 15 chr5 112524103 112524235 -40013024 - RSINE1 SINE B4 -25 140 1 4 1443 560 142 160 0 chr5 112524693 112524799 -40012460 - RMER15 LTR ERVL -5 570 448 5 1443 224 93 47 0 chr5 112524806 112524849 -40012410 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 5 1443 414 0 0 0 chr5 112524970 112525016 -40012243 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1443 659 184 25 56 chr5 112525082 112525243 -40012016 + RMER15 LTR ERVL 51 206 -369 5 1443 504 0 0 0 chr5 112525244 112525300 -40011959 + (GA)n Simple_repeat Simple_repeat 1 56 0 5 1443 1237 186 37 50 chr5 112525321 112525652 -40011607 - RMER15 LTR ERVL -154 421 51 5 1443 325 310 0 81 chr5 112526240 112526363 -40010896 + MLT1D LTR MaLR 273 385 -120 5 1443 721 197 6 17 chr5 112526470 112526651 -40010608 + GA-rich Low_complexity Low_complexity 2 180 0 5 1443 286 198 34 17 chr5 112527409 112527527 -40009732 + (TGAA)n Simple_repeat Simple_repeat 1 120 0 5 1443 3102 134 16 40 chr5 112528900 112529445 -40007814 - RLTR20C LTR ERVK 0 534 3 5 1443 795 135 106 30 chr5 112529447 112529645 -40007614 - MYSERV16_I-int LTR ERVK 0 2326 2114 5 1443 350 244 26 0 chr5 112529712 112529790 -40007469 - ID4 SINE ID -3 80 1 5 1443 2838 65 55 47 chr5 112529930 112530333 -40006926 - MTB_Mm LTR MaLR -1 406 1 6 1443 180 0 0 0 chr5 112531059 112531079 -40006180 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1443 207 100 0 0 chr5 112531748 112531778 -40005481 + (TCC)n Simple_repeat Simple_repeat 2 31 0 6 1443 208 200 0 0 chr5 112532876 112532916 -40004343 + MIRm SINE MIR 115 154 -122 6 1443 3033 142 24 16 chr5 112533064 112533565 -40003694 - RLTR16 LTR ERVK 0 505 1 6 1443 912 218 138 106 chr5 112534190 112534413 -40002846 - ORR1D1 LTR MaLR 0 374 153 6 1443 688 182 250 18 chr5 112534413 112534581 -40002678 - B3 SINE B2 -6 210 4 6 1443 912 218 138 106 chr5 112534581 112534706 -40002553 - ORR1D1 LTR MaLR -222 152 15 6 1443 1244 147 88 0 chr5 112535324 112535528 -40001731 + URR1A DNA MER1_type 5 226 0 6 1443 224 269 15 15 chr5 112535849 112535917 -40001342 + (TATG)n Simple_repeat Simple_repeat 2 69 0 6 1443 317 311 16 16 chr5 112536018 112536139 -40001120 + (CATATA)n Simple_repeat Simple_repeat 2 122 0 6 1443 286 242 12 42 chr5 112536160 112536328 -40000931 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 6 1443 215 247 0 25 chr5 112536348 112536427 -40000832 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 6 1443 310 291 0 23 chr5 112536448 112536536 -40000723 + (CATA)n Simple_repeat Simple_repeat 2 87 0 7 1443 225 271 17 0 chr5 112536733 112536792 -40000467 + MIRc SINE MIR 81 140 -128 7 1443 251 54 27 0 chr5 112537668 112537705 -39999554 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 7 1443 405 0 0 0 chr5 112537705 112537750 -39999509 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 7 1443 244 319 33 49 chr5 112537972 112538094 -39999165 - MLT1E2 LTR MaLR -488 139 20 7 1443 200 258 5 17 chr5 112538478 112538558 -39998701 - MIRc SINE MIR -73 195 113 7 1443 297 191 214 3 chr5 112538711 112538824 -39998435 + MIRc SINE MIR 28 160 -48 7 1443 1365 160 140 56 chr5 112538869 112539247 -39998012 + RMER17C LTR ERVK 1 410 0 7 1443 243 0 0 0 chr5 112540001 112540028 -39997231 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1443 315 284 68 17 chr5 112540028 112540140 -39997119 - MIR3 SINE MIR -35 173 56 7 1443 396 40 0 0 chr5 112540218 112540268 -39996991 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1443 255 282 103 33 chr5 112540658 112540780 -39996479 - MIRm SINE MIR -141 135 2 8 1443 631 187 266 6 chr5 112540884 112541061 -39996198 - RMER4A LTR ERVK -19 566 344 8 1443 566 204 0 12 chr5 112541071 112541240 -39996019 + GA-rich Low_complexity Low_complexity 3 169 0 8 1443 1263 172 39 8 chr5 112541246 112541503 -39995756 - RMER4A LTR ERVK -201 265 1 8 1443 269 358 64 0 chr5 112541525 112541634 -39995625 + MIR3 SINE MIR 44 159 -49 8 1443 218 226 38 0 chr5 112541741 112541794 -39995465 - MIRc SINE MIR -130 138 84 7 1443 226 256 0 159 chr5 112543575 112543682 -39993577 + L1M1 LINE L1 5807 5896 -404 8 1443 249 336 91 21 chr5 112544425 112544568 -39992691 - MLT1J2 LTR MaLR -119 329 177 8 1443 414 0 0 0 chr5 112545142 112545188 -39992071 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1443 229 373 23 40 chr5 112545195 112545371 -39991888 + RLTR21 LTR ERVK 1084 1256 -316 8 1443 21 57 0 0 chr5 112545731 112545766 -39991493 + AT_rich Low_complexity Low_complexity 1 35 0 8 1443 440 228 0 11 chr5 112548647 112548829 -39988430 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1443 516 196 0 0 chr5 112548843 112549076 -39988183 + (CA)n Simple_repeat Simple_repeat 1 233 0 9 1443 451 228 150 0 chr5 112549695 112549833 -39987426 - MLT1A1 LTR MaLR -2 406 233 9 1443 499 319 103 39 chr5 112550089 112550399 -39986860 - ORR1E LTR MaLR -20 339 10 9 1443 310 270 50 38 chr5 112550400 112550536 -39986723 - MIRb SINE MIR -88 174 37 9 1443 2442 116 33 50 chr5 112551541 112551960 -39985299 - MTC LTR MaLR 0 421 10 9 1443 225 0 0 0 chr5 112553444 112553469 -39983790 + (CAGT)n Simple_repeat Simple_repeat 1 25 0 9 1443 253 304 63 94 chr5 112553889 112554016 -39983243 - MLT1B LTR MaLR -68 322 200 9 1443 190 265 103 47 chr5 112554101 112554208 -39983051 - MIRc SINE MIR -118 150 38 9 1443 184 196 58 19 chr5 112554252 112554304 -39982955 + MIRm SINE MIR 92 145 -131 9 1443 338 245 50 30 chr5 112555399 112555500 -39981759 - HAL1-2a_MD LINE L1 -490 2534 2432 9 1443 489 219 14 53 chr5 112555891 112556108 -39981151 - ORR1A1 LTR MaLR -234 160 8 1 1443 514 173 13 8 chr5 112556244 112556378 -39980881 + ORR1A4 LTR MaLR 1 151 -243 1 1443 2532 92 30 0 chr5 112556870 112557206 -39980053 - ORR1A1 LTR MaLR 0 346 1 1 1443 390 298 178 14 chr5 112557542 112557750 -39979509 + L1MB7 LINE L1 5615 5856 -328 1 1443 795 117 7 62 chr5 112557924 112558070 -39979189 - URR1B DNA MER1_type 0 225 88 1 1443 294 329 6 76 chr5 112558070 112558087 -39979172 + CYRA11_Mm Unknown Y-chromosome 207 322 -295 1 1443 422 332 80 68 chr5 112558843 112559179 -39978080 - ORR1E LTR MaLR -10 349 10 1 1443 243 247 169 0 chr5 112559181 112559258 -39978001 - MIR SINE MIR -94 168 79 1 1443 3097 45 39 8 chr5 112559318 112559702 -39977557 + MTA_Mm LTR MaLR 1 396 0 1 1443 274 253 38 104 chr5 112560158 112560264 -39976995 + B4 SINE B4 1 100 -65 1 1443 250 311 40 0 chr5 112560551 112560625 -39976634 + MER58A DNA MER1_type 1 77 -147 1 1443 248 250 0 35 chr5 112560634 112560750 -39976509 + G-rich Low_complexity Low_complexity 2 113 0 1 1443 194 238 0 0 chr5 112561177 112561219 -39976040 + MIRc SINE MIR 114 155 -113 1 1443 376 346 0 12 chr5 112562192 112562353 -39974906 + (CATATA)n Simple_repeat Simple_repeat 6 164 0 1 1443 477 207 14 20 chr5 112562365 112562513 -39974746 + (CATA)n Simple_repeat Simple_repeat 1 147 0 1 1443 303 300 12 0 chr5 112563438 112563531 -39973728 + MIRm SINE MIR 63 156 -112 1 1443 228 286 49 61 chr5 112563551 112563633 -39973626 + B1F1 SINE Alu 1 81 -46 1 1443 481 334 87 119 chr5 112564514 112564908 -39972351 - MLT1H LTR MaLR 0 549 157 1 1443 1047 253 40 70 chr5 112564908 112565206 -39972053 - B4 SINE B4 -2 290 2 1 1443 481 334 87 119 chr5 112565206 112565341 -39971918 - MLT1H LTR MaLR -393 156 37 1 1443 238 259 0 0 chr5 112565361 112565419 -39971840 - MIRc SINE MIR -125 143 86 1 1443 1126 188 67 64 chr5 112565419 112565731 -39971528 - RMER13B LTR ERVK -1 907 595 1 1443 482 185 0 0 chr5 112567345 112567458 -39969801 + ORR1A2 LTR MaLR 1 113 -233 1 1443 1890 117 14 8 chr5 112567493 112567819 -39969440 + ORR1A2 LTR MaLR 11 338 -8 1 1443 2935 106 2 48 chr5 112568385 112568821 -39968438 - MTC LTR MaLR -1 420 5 1 1443 6563 159 60 24 chr5 112568825 112570039 -39967220 - MTC-int LTR MaLR 0 1258 1 1 1443 2352 154 72 3 chr5 112570043 112570434 -39966825 - MTC LTR MaLR -3 418 1 1 1443 424 246 257 49 chr5 112570917 112571230 -39966029 + MT-int LTR MaLR 678 955 -143 1 1443 222 305 122 0 chr5 112572294 112572376 -39964883 + B4A SINE B4 2 93 -199 1 1443 280 264 173 0 chr5 112572384 112572494 -39964765 + L2b LINE L2 3023 3151 -224 1 1443 195 177 0 46 chr5 112572538 112572603 -39964656 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1443 301 179 29 43 chr5 112572607 112572677 -39964582 + HAL1-3A_ME LINE L1 1975 2043 -815 1 1443 206 136 23 0 chr5 112573095 112573139 -39964120 + CT-rich Low_complexity Low_complexity 5 49 0 1 1443 1354 230 41 9 chr5 112573771 112574113 -39963146 - ORR1E LTR MaLR -6 353 1 1 1443 318 180 0 0 chr5 112574359 112574420 -39962839 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1443 1019 215 66 62 chr5 112574503 112574791 -39962468 + B4A SINE B4 2 290 -2 1 1443 198 287 0 0 chr5 112574814 112574901 -39962358 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1443 342 208 14 0 chr5 112574903 112574975 -39962284 + HAL1-3A_ME LINE L1 1975 2047 -811 1 1443 688 191 38 8 chr5 112575466 112575598 -39961661 + B1_Mur2 SINE Alu 2 137 -12 1 1443 279 0 0 0 chr5 112575598 112575629 -39961630 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 1 1443 824 273 29 116 chr5 112575658 112575878 -39961381 + B4A SINE B4 2 206 -86 1 1443 941 211 39 0 chr5 112575878 112576034 -39961225 + RSINE1 SINE B4 3 164 -1 1 1443 824 273 29 116 chr5 112576034 112576124 -39961135 + B4A SINE B4 207 285 -7 1 1443 361 302 5 63 chr5 112576131 112576322 -39960937 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1443 259 266 117 0 chr5 112577238 112577367 -39959892 + MIRc SINE MIR 36 177 -31 1 1443 606 113 0 0 chr5 112577575 112577690 -39959569 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 1443 287 292 0 0 chr5 112577837 112577909 -39959350 + tRNA-Ala-GCA tRNA tRNA 3 74 -1 1 1443 290 303 0 5 chr5 112578851 112579285 -39957974 + (CA)n Simple_repeat Simple_repeat 1 431 0 1 1443 194 276 6 34 chr5 112579396 112579572 -39957687 + (CATATA)n Simple_repeat Simple_repeat 6 176 0 1 1443 345 47 0 0 chr5 112579656 112579699 -39957560 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1443 212 233 39 64 chr5 112580136 112580214 -39957045 - PB1D7 SINE Alu 0 120 45 1 1443 318 289 12 0 chr5 112580322 112580405 -39956854 - MIR SINE MIR -70 192 109 1 1443 198 231 0 0 chr5 112580583 112580635 -39956624 + MIR SINE MIR 81 132 -76 1 1443 690 326 132 20 chr5 112581091 112581871 -39955388 + L1MB7 LINE L1 5101 5998 -173 1 1443 758 171 17 6 chr5 112581892 112582069 -39955190 + GA-rich Low_complexity Low_complexity 2 180 0 1 1443 225 0 0 0 chr5 112582187 112582212 -39955047 + (CG)n Simple_repeat Simple_repeat 1 25 0 1 1443 288 0 0 0 chr5 112582212 112582243 -39955016 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1443 217 246 46 0 chr5 112582377 112582442 -39954817 - B4 SINE B4 -224 68 1 1 1443 205 205 0 0 chr5 112582511 112582550 -39954709 + T-rich Low_complexity Low_complexity 1 39 0 1 1443 24 0 0 0 chr5 112582898 112582922 -39954337 + GC_rich Low_complexity Low_complexity 1 24 0 1 1443 564 245 40 7 chr5 112583285 112583437 -39953822 + B3 SINE B2 30 186 -30 1 1443 1621 127 62 163 chr5 112584147 112584360 -39952899 + MTC LTR MaLR 34 210 -211 1 1443 1245 83 24 0 chr5 112584360 112584508 -39952751 + B2_Mm1a SINE B2 2 150 -43 1 1443 207 0 0 0 chr5 112584508 112584531 -39952728 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1443 1245 83 24 0 chr5 112584531 112584551 -39952708 + B2_Mm1a SINE B2 151 173 -20 1 1443 1621 127 62 163 chr5 112584551 112584760 -39952499 + MTC LTR MaLR 211 413 -8 1 1443 346 297 59 10 chr5 112584885 112584987 -39952272 - MIRc SINE MIR -114 154 48 1 1443 497 276 83 6 chr5 112585542 112585710 -39951549 - B4 SINE B4 -111 181 1 1 1443 256 291 11 34 chr5 112586132 112586221 -39951038 - MLT1K LTR MaLR -345 250 164 1 1443 800 121 0 8 chr5 112586588 112586721 -39950538 + (GAAA)n Simple_repeat Simple_repeat 4 135 0 1 1443 914 128 0 32 chr5 112586735 112586920 -39950339 + GA-rich Low_complexity Low_complexity 2 180 0 1 1443 217 208 19 0 chr5 112587121 112587174 -39950085 - PB1D10 SINE Alu -34 83 30 1 1443 441 311 25 0 chr5 112587262 112587381 -39949878 + PB1 SINE Alu 4 125 -2 1 1443 309 167 33 22 chr5 112587404 112587496 -39949763 + GA-rich Low_complexity Low_complexity 4 96 0 1 1443 211 130 186 20 chr5 112587875 112587977 -39949282 + L2 LINE L2 2950 3068 -351 1 1443 217 271 56 14 chr5 112588251 112588322 -39948937 + L2a LINE L2 3346 3419 -7 1 1443 242 294 100 65 chr5 112588381 112588581 -39948678 + RMER12 LTR ERVK 741 947 -375 1 1443 352 316 60 38 chr5 112588581 112588765 -39948494 + RMER12 LTR ERVK 771 958 -364 1 1443 642 268 214 16 chr5 112588791 112589034 -39948225 - B4 SINE B4 0 292 2 1 1443 371 280 50 64 chr5 112589049 112589190 -39948069 - B1F1 SINE Alu -4 145 7 1 1443 260 318 34 11 chr5 112589806 112589895 -39947364 + MIRb SINE MIR 84 174 -94 1 1443 281 176 0 0 chr5 112590181 112590230 -39947029 - ORR1E LTR MaLR -8 371 323 1 1443 331 262 204 0 chr5 112590230 112590402 -39946857 + B4 SINE B4 1 207 -85 1 1443 349 155 19 19 chr5 112590462 112590567 -39946692 + (CAGAGA)n Simple_repeat Simple_repeat 2 106 0 1 1443 846 274 95 0 chr5 112590568 112590842 -39946417 - ORR1E LTR MaLR -42 317 18 1 1444 257 219 62 15 chr5 112590925 112590990 -39946269 - L1MB2 LINE L1 -255 5916 5849 1 1444 657 280 105 63 chr5 112591718 112592069 -39945190 + MTEa LTR MaLR 1 366 -13 1 1444 997 302 122 22 chr5 112592085 112592573 -39944686 + MTEa-int LTR MaLR 30 520 -989 1 1444 1099 305 134 13 chr5 112592931 112593393 -39943866 + MTEa-int LTR MaLR 1008 1525 -55 1 1444 1381 52 11 6 chr5 112593665 112593840 -39943419 + B2_Mm1t SINE B2 1 176 -17 1 1444 243 133 0 54 chr5 112593870 112593960 -39943299 + B2_Mm2 SINE B2 64 195 0 1 1444 540 148 206 32 chr5 112594756 112594882 -39942377 + B1_Mur2 SINE Alu 2 149 0 1 1444 1150 236 37 54 chr5 112594911 112595207 -39942052 + B4 SINE B4 2 292 0 1 1444 701 178 15 11 chr5 112595207 112595473 -39941786 + (CATA)n Simple_repeat Simple_repeat 1 267 0 1 1444 226 205 0 0 chr5 112595475 112595514 -39941745 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1444 1318 27 0 0 chr5 112596418 112596566 -39940693 + B1_Mus1 SINE Alu 1 148 0 1 1444 213 94 0 0 chr5 112596568 112596600 -39940659 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1444 22 80 0 0 chr5 112596702 112596752 -39940507 + AT_rich Low_complexity Low_complexity 1 50 0 1 1444 209 83 0 27 chr5 112597487 112597524 -39939735 + (TTGG)n Simple_repeat Simple_repeat 1 36 0 1 1444 450 251 0 0 chr5 112597584 112597763 -39939496 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1444 236 283 6 0 chr5 112597781 112597954 -39939305 + (TG)n Simple_repeat Simple_repeat 2 175 0 1 1444 337 343 131 50 chr5 112597985 112598034 -39939225 - B4 SINE B4 -2 290 225 1 1444 316 296 223 21 chr5 112598034 112598272 -39938987 - B4 SINE B4 -6 286 1 1 1444 337 343 131 50 chr5 112598272 112598443 -39938816 - B4 SINE B4 -68 224 52 1 1444 1038 110 7 0 chr5 112598600 112598746 -39938513 + B1_Mus1 SINE Alu 2 148 0 1 1444 192 77 0 0 chr5 112598747 112598773 -39938486 + (GA)n Simple_repeat Simple_repeat 1 26 0 1 1444 812 183 433 8 chr5 112598775 112599128 -39938131 - RMER15 LTR ERVL -43 532 30 1 1444 2065 169 39 42 chr5 112601053 112601460 -39935799 + RMER19B LTR ERVK 497 902 0 1 1444 1276 295 12 92 chr5 112601600 112602011 -39935248 + MTE2b LTR MaLR 1 378 -1 1 1444 734 138 43 0 chr5 112602369 112602507 -39934752 + URR1A DNA MER1_type 81 224 -2 1 1444 302 323 54 24 chr5 112602507 112602538 -39934721 - CYRA11_Mm Unknown Y-chromosome -438 179 144 1 1444 314 349 117 23 chr5 112602774 112603073 -39934186 - MLT2B3 LTR ERVL -65 489 163 2 1444 1379 137 0 70 chr5 112604399 112604642 -39932617 - URR1A DNA MER1_type 0 226 1 2 1444 898 253 103 40 chr5 112605195 112605516 -39931743 - MTD LTR MaLR -78 341 1 2 1444 439 178 17 86 chr5 112605530 112605635 -39931624 - RLTR11A LTR ERVK -2 526 430 2 1444 2137 74 3 7 chr5 112605635 112605935 -39931324 - ORR1A2 LTR MaLR 0 327 29 2 1444 462 185 0 0 chr5 112605950 112606042 -39931217 - ORR1A0 LTR MaLR -254 92 1 2 1444 1667 243 33 31 chr5 112606042 112606466 -39930793 - RLTR11A LTR ERVK -97 431 7 2 1444 1042 266 114 27 chr5 112606474 112606807 -39930452 + MTE2a LTR MaLR 16 377 -2 2 1444 194 0 39 0 chr5 112607290 112607316 -39929943 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1444 265 254 12 78 chr5 112607470 112607713 -39929546 + RMER17D LTR ERVK 234 460 -429 2 1444 378 257 9 54 chr5 112608317 112608428 -39928831 - MER20 DNA MER1_type -113 106 1 2 1444 201 154 0 0 chr5 112608614 112608653 -39928606 + G-rich Low_complexity Low_complexity 4 42 0 2 1444 559 275 45 35 chr5 112609058 112609258 -39928001 + ORR1E LTR MaLR 8 209 -150 2 1444 207 276 35 0 chr5 112609879 112609948 -39927311 - MIR SINE MIR -115 153 82 2 1444 306 347 64 91 chr5 112610265 112610309 -39926950 - ORR1E LTR MaLR -18 341 296 2 1444 180 0 0 0 chr5 112610309 112610329 -39926930 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 2 1444 306 347 64 91 chr5 112610329 112610626 -39926633 - ORR1E LTR MaLR -64 295 9 2 1444 1122 334 167 38 chr5 112610632 112611295 -39925964 - MTE-int LTR MaLR -51 1529 781 2 1444 225 222 127 0 chr5 112611342 112611405 -39925854 - MTE-int LTR MaLR -965 615 545 2 1444 1366 279 52 10 chr5 112611406 112611808 -39925451 - MTE-int LTR MaLR -1137 443 25 2 1444 479 259 149 70 chr5 112611797 112612038 -39925221 - ORR1E LTR MaLR -49 310 51 2 1444 324 333 75 0 chr5 112612581 112612728 -39924531 + MIR SINE MIR 33 190 -72 2 1444 280 172 40 0 chr5 112612835 112612934 -39924325 + (CAGA)n Simple_repeat Simple_repeat 2 104 0 2 1444 547 144 48 6 chr5 112612949 112613117 -39924142 + (CAGA)n Simple_repeat Simple_repeat 2 176 0 2 1444 193 318 0 29 chr5 112614096 112614164 -39923095 - MIRb SINE MIR -92 176 111 2 1444 282 283 54 11 chr5 112614494 112614587 -39922672 - MLT1A LTR MaLR -10 364 268 2 1444 318 273 0 0 chr5 112614845 112614922 -39922337 + PB1D10 SINE Alu 34 110 -7 2 1444 244 211 26 0 chr5 112615006 112615082 -39922177 + C-rich Low_complexity Low_complexity 4 81 0 2 1444 305 27 0 0 chr5 112615437 112615474 -39921785 + HAL1-3A_ME LINE L1 1975 2011 -847 2 1444 513 205 0 0 chr5 112615476 112615593 -39921666 + (CA)n Simple_repeat Simple_repeat 2 118 0 2 1444 4457 14 2 12 chr5 112616034 112616532 -39920727 - MT2_Mm LTR ERVL 0 493 1 2 1444 297 0 0 0 chr5 112616532 112616570 -39920689 - MERVL-int LTR ERVL 0 5485 5448 2 1444 370 167 46 35 chr5 112616570 112616657 -39920602 - ORR1A3-int LTR MaLR -1323 640 553 2 1444 45850 16 6 0 chr5 112616657 112621983 -39915276 - MERVL-int LTR ERVL -125 5360 1 2 1444 4457 14 2 12 chr5 112621983 112622481 -39914778 - MT2_Mm LTR ERVL 0 493 1 2 1444 494 237 65 135 chr5 112622490 112622690 -39914569 + MTE2a LTR MaLR 9 194 -185 2 1444 1330 234 40 119 chr5 112622704 112622880 -39914379 + RMER4B LTR ERVK 35 212 -373 2 1444 2400 86 185 3 chr5 112622880 112623253 -39914006 - BGLII_B LTR ERVK 0 441 1 2 1444 1330 234 40 119 chr5 112623253 112623427 -39913832 + RMER4B LTR ERVK 213 337 -248 2 1444 243 0 0 0 chr5 112623427 112623454 -39913805 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2 1444 933 9 0 0 chr5 112623455 112623561 -39913698 + (GGAAA)n Simple_repeat Simple_repeat 4 109 0 2 1444 1330 234 40 119 chr5 112623561 112623804 -39913455 + RMER4B LTR ERVK 338 584 -1 2 1444 270 349 28 9 chr5 112624011 112624118 -39913141 + MIRc SINE MIR 73 181 -87 2 1444 705 213 106 10 chr5 112624196 112624395 -39912864 - MTEa LTR MaLR -159 220 3 2 1444 312 188 0 0 chr5 112624955 112625024 -39912235 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 1444 711 139 0 0 chr5 112625312 112625441 -39911818 + (TG)n Simple_repeat Simple_repeat 2 130 0 2 1444 236 309 11 0 chr5 112626098 112626204 -39911055 + L1M5 LINE L1 5581 5687 -757 2 1444 258 222 19 0 chr5 112626204 112626258 -39911001 + B4 SINE B4 6 60 -232 2 1444 2400 64 3 112 chr5 112626320 112626396 -39910863 - ORR1A2 LTR MaLR 0 327 287 2 1444 1218 75 0 0 chr5 112626396 112626543 -39910716 - B1_Mus2 SINE Alu 0 147 1 2 1444 2400 64 3 112 chr5 112626543 112626833 -39910426 - ORR1A2 LTR MaLR -41 286 1 2 1444 382 266 175 63 chr5 112627151 112627340 -39909919 - MTD LTR MaLR -98 321 112 2 1444 1817 83 19 12 chr5 112627615 112627871 -39909388 - L1_Mus2 LINE L1 0 6566 6309 2 1444 5050 55 5 2 chr5 112627857 112628475 -39908784 - L1Md_F2 LINE L1 -1 6581 5962 2 1444 833 110 0 1 chr5 112628475 112628610 -39908649 - L1_Mus2 LINE L1 -245 6321 6206 2 1444 263 218 12 82 chr5 112628544 112628629 -39908630 + L1_Mus2 LINE L1 6087 6165 -401 2 1444 4617 133 4 39 chr5 112628757 112629474 -39907785 + RLTR17 LTR ERVK 1 692 0 2 1444 261 246 16 0 chr5 112629656 112629717 -39907542 + B3A SINE B2 3 64 -134 2 1444 244 23 44 44 chr5 112630039 112630084 -39907175 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 2 1444 297 0 0 0 chr5 112630084 112630117 -39907142 + (ATTG)n Simple_repeat Simple_repeat 1 33 0 2 1444 574 238 97 6 chr5 112630216 112630381 -39906878 + B3A SINE B2 3 182 -16 2 1444 555 195 0 0 chr5 112630383 112630511 -39906748 + (CA)n Simple_repeat Simple_repeat 1 128 0 2 1444 407 254 53 0 chr5 112630883 112630997 -39906262 - PB1D9 SINE Alu 0 120 1 2 1444 1338 87 16 16 chr5 112631029 112631216 -39906043 + B2_Mm2 SINE B2 2 188 -7 2 1444 885 283 81 33 chr5 112631311 112631644 -39905615 + MTE2b LTR MaLR 1 349 -30 2 1444 387 0 0 0 chr5 112631921 112631964 -39905295 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 1444 234 0 0 0 chr5 112631964 112631989 -39905270 + (GA)n Simple_repeat Simple_repeat 2 27 0 2 1444 824 247 233 3 chr5 112632225 112632526 -39904733 + MTE2b LTR MaLR 1 370 -9 2 1444 551 155 0 10 chr5 112632528 112632586 -39904673 + polypurine Low_complexity Low_complexity 3 60 0 2 1444 1515 28 0 0 chr5 112632586 112632766 -39904493 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 2 1444 551 155 0 10 chr5 112632766 112632811 -39904448 + polypurine Low_complexity Low_complexity 61 105 0 2 1444 687 155 30 15 chr5 112633687 112633818 -39903441 - B1_Mur2 SINE Alu -3 146 14 2 1444 989 87 69 0 chr5 112634304 112634470 -39902789 + B2_Mm2 SINE B2 1 180 -13 2 1444 294 146 37 0 chr5 112634478 112634560 -39902699 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 2 1444 37 23 0 0 chr5 112634560 112634604 -39902655 + AT_rich Low_complexity Low_complexity 1 44 0 2 1444 282 310 0 11 chr5 112635847 112635935 -39901324 - MTEa LTR MaLR -1 378 292 2 1444 242 286 36 45 chr5 112635969 112636079 -39901180 + RMER15 LTR ERVL 48 156 -419 2 1444 415 292 181 23 chr5 112636110 112636331 -39900928 + RMER15 LTR ERVL 306 561 -14 2 1444 347 244 12 12 chr5 112636334 112636417 -39900842 + PB1D10 SINE Alu 34 116 -1 2 1444 692 188 70 7 chr5 112636417 112636574 -39900685 + B3 SINE B2 2 170 -28 2 1444 3286 60 2 2 chr5 112636574 112636974 -39900285 - MTB LTR MaLR 0 400 1 2 1444 596 235 81 32 chr5 112636974 112637001 -39900258 + B3A SINE B2 171 194 -4 2 1444 312 274 97 9 chr5 112637039 112637153 -39900106 + RMER30 DNA MER1_type 2 125 -77 2 1444 229 307 86 17 chr5 112637154 112637270 -39899989 - MIRc SINE MIR -103 165 42 2 1444 187 271 22 0 chr5 112638200 112638277 -39898982 - MIR SINE MIR -137 131 51 2 1444 251 26 79 0 chr5 112638503 112638541 -39898718 + (ATGGTG)n Simple_repeat Simple_repeat 1 41 0 2 1444 528 16 0 0 chr5 112639735 112639796 -39897463 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1444 198 0 0 0 chr5 112641563 112641585 -39895674 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1444 1198 68 0 0 chr5 112641594 112641741 -39895518 - B1_Mus2 SINE Alu 0 147 1 2 1444 759 246 52 28 chr5 112641741 112641944 -39895315 - B4A SINE B4 -77 215 7 2 1444 342 240 57 136 chr5 112642007 112642147 -39895112 - RSINE1 SINE B4 -29 136 8 2 1444 225 0 0 0 chr5 112642743 112642768 -39894491 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1444 207 0 0 0 chr5 112646795 112646818 -39890441 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1444 246 261 0 28 chr5 112648774 112648845 -39888414 + GA-rich Low_complexity Low_complexity 2 70 0 2 1444 3161 49 0 117 chr5 112651162 112651413 -39885846 - MTB_Mm LTR MaLR 0 407 198 2 1444 1088 68 13 27 chr5 112651413 112651563 -39885696 - B1_Mus1 SINE Alu 0 148 1 2 1444 3161 49 0 117 chr5 112651563 112651772 -39885487 - MTB_Mm LTR MaLR -210 197 1 2 1444 257 244 19 126 chr5 112651968 112651989 -39885270 + MT2B2 LTR ERVL 149 158 -426 2 1444 490 219 0 0 chr5 112651989 112652085 -39885174 + PB1D10 SINE Alu 1 96 -21 2 1444 414 0 0 0 chr5 112652092 112652138 -39885121 + (TC)n Simple_repeat Simple_repeat 1 46 0 2 1444 306 379 68 8 chr5 112652171 112652405 -39884854 + L1MB8 LINE L1 5920 6167 -11 2 1444 1132 202 10 29 chr5 112652568 112652777 -39884482 - B3 SINE B2 -11 205 1 2 1444 552 271 175 6 chr5 112652809 112652980 -39884279 - ID_B1 SINE B4 -1 223 24 2 1444 417 229 143 0 chr5 112653526 112653631 -39883628 - B1F SINE Alu 0 149 30 2 1444 241 219 122 14 chr5 112654413 112654432 -39882827 - ID_B1 SINE B4 0 224 206 2 1444 498 33 0 0 chr5 112654432 112654492 -39882767 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1444 241 219 122 14 chr5 112654492 112654546 -39882713 - ID_B1 SINE B4 -19 205 143 2 1444 186 261 65 0 chr5 112655088 112655134 -39882125 - MIRm SINE MIR -124 152 104 2 1444 229 308 0 0 chr5 112655469 112655521 -39881738 - PB1D10 SINE Alu -10 107 56 2 1444 382 216 60 0 chr5 112655535 112655632 -39881627 + PB1D9 SINE Alu 5 106 -14 2 1444 249 57 0 0 chr5 112655634 112655669 -39881590 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2 1444 216 172 14 159 chr5 112655669 112655738 -39881521 - B4A SINE B4 -151 141 83 2 1444 440 264 38 10 chr5 112655795 112655934 -39881325 - B1F1 SINE Alu 0 149 10 2 1444 316 316 6 57 chr5 112655934 112655952 -39881307 - ID_B1 SINE B4 -1 222 74 2 1444 396 0 0 0 chr5 112656023 112656067 -39881192 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1444 412 202 53 0 chr5 112657000 112657094 -39880165 + MIRb SINE MIR 85 183 -85 3 1444 198 396 19 9 chr5 112658315 112658422 -39878837 + MER5A DNA MER1_type 16 123 -66 3 1444 769 75 0 0 chr5 112658803 112658909 -39878350 - B2_Mm2 SINE B2 -88 107 2 3 1444 24 0 0 0 chr5 112658921 112658945 -39878314 + AT_rich Low_complexity Low_complexity 1 24 0 3 1444 312 261 109 34 chr5 112658955 112659074 -39878185 - RSINE1 SINE B4 -1 164 37 3 1444 199 79 0 50 chr5 112659116 112659156 -39878103 + (GGGGA)n Simple_repeat Simple_repeat 1 38 0 3 1444 1770 218 61 19 chr5 112659515 112659875 -39877384 - MTEa LTR MaLR -2 377 3 3 1444 251 93 23 0 chr5 112661717 112661760 -39875499 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1444 317 109 18 0 chr5 112661787 112661842 -39875417 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1444 238 304 30 0 chr5 112661968 112662103 -39875156 + (TG)n Simple_repeat Simple_repeat 2 140 0 3 1444 219 69 0 0 chr5 112662119 112662148 -39875111 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1444 330 318 64 0 chr5 112662175 112662285 -39874974 + RCHARR1 DNA MER1_type 125 241 -733 3 1444 1339 199 102 6 chr5 112662319 112662673 -39874586 + RCHARR1 DNA MER1_type 330 717 -257 3 1444 783 243 5 52 chr5 112662769 112662960 -39874299 + B3A SINE B2 1 182 -16 3 1444 387 248 0 0 chr5 112662960 112663081 -39874178 + (CA)n Simple_repeat Simple_repeat 1 121 0 3 1444 23 54 0 0 chr5 112663094 112663131 -39874128 + AT_rich Low_complexity Low_complexity 1 37 0 3 1444 611 293 92 33 chr5 112663222 112663494 -39873765 - B4A SINE B4 -4 288 1 3 1444 511 114 71 24 chr5 112663741 112663911 -39873348 + (TCTCTG)n Simple_repeat Simple_repeat 2 179 0 3 1444 251 173 27 0 chr5 112663925 112664000 -39873259 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 3 1444 2970 87 10 17 chr5 112664737 112665147 -39872112 - MTB_Mm LTR MaLR 0 407 1 3 1444 725 292 5 9 chr5 112665201 112665412 -39871847 - B4 SINE B4 -82 210 1 3 1444 590 0 14 0 chr5 112665939 112666009 -39871250 + (TC)n Simple_repeat Simple_repeat 1 71 0 3 1444 254 29 29 0 chr5 112666928 112666963 -39870296 + (CCCCCA)n Simple_repeat Simple_repeat 3 38 0 3 1444 271 339 9 9 chr5 112667347 112667463 -39869796 + (CA)n Simple_repeat Simple_repeat 1 116 0 3 1444 232 228 0 61 chr5 112668648 112668779 -39868480 + (TG)n Simple_repeat Simple_repeat 1 123 0 3 1444 333 0 0 0 chr5 112669072 112669109 -39868150 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1444 558 276 88 25 chr5 112669121 112669325 -39867934 + B4A SINE B4 2 218 -74 3 1444 361 254 60 10 chr5 112669462 112669572 -39867687 + PB1D10 SINE Alu 2 117 0 3 1444 183 250 60 36 chr5 112669641 112669724 -39867535 - L4 LINE RTE -179 1850 1766 3 1444 511 303 7 0 chr5 112670245 112670387 -39866872 + RSINE1 SINE B4 16 158 -7 3 1444 944 251 135 111 chr5 112670835 112671242 -39866017 + MT2A LTR ERVL 3 419 -114 3 1444 186 43 0 0 chr5 112671242 112671265 -39865994 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 3 1444 235 234 0 0 chr5 112671265 112671312 -39865947 + MT2A LTR ERVL 538 584 0 3 1444 225 254 17 17 chr5 112671636 112671696 -39865563 + RMER15 LTR ERVL 1 60 -515 3 1444 1470 176 269 3 chr5 112671772 112672159 -39865100 + RMER15 LTR ERVL 83 572 -3 3 1444 303 49 0 0 chr5 112672575 112672616 -39864643 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1444 491 237 10 7 chr5 112673259 112673377 -39863882 - B1F SINE Alu -34 115 1 3 1444 393 22 0 0 chr5 112673506 112673552 -39863707 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1444 492 18 0 0 chr5 112673552 112673608 -39863651 + (CA)n Simple_repeat Simple_repeat 1 57 0 3 1444 1322 148 32 5 chr5 112673669 112673887 -39863372 + URR1B DNA MER1_type 2 225 0 3 1444 1468 250 85 45 chr5 112674148 112674725 -39862534 - RMER13A LTR ERVK -214 646 1 3 1444 687 186 80 6 chr5 112674840 112675002 -39862257 + B3 SINE B2 40 213 -3 3 1444 212 364 91 0 chr5 112675050 112675178 -39862081 + B3A SINE B2 27 168 -30 3 1444 233 57 29 0 chr5 112675178 112675213 -39862046 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1444 212 364 91 0 chr5 112675213 112675238 -39862021 + B3A SINE B2 169 193 -5 3 1444 1468 59 37 11 chr5 112675242 112675430 -39861829 + B2_Mm2 SINE B2 3 195 0 3 1444 347 250 0 13 chr5 112676569 112676646 -39860613 + MLT1K LTR MaLR 163 238 -357 3 1444 940 137 14 7 chr5 112676770 112676917 -39860342 + B1_Mus1 SINE Alu 1 148 0 3 1444 246 364 54 8 chr5 112677647 112677777 -39859482 + MIRb SINE MIR 56 191 -77 3 1444 504 32 0 0 chr5 112678025 112678087 -39859172 + (GA)n Simple_repeat Simple_repeat 1 62 0 3 1444 1260 82 18 0 chr5 112679324 112679495 -39857764 + B2_Mm1t SINE B2 3 176 -17 3 1444 382 117 0 5 chr5 112679510 112679576 -39857683 + B2_Mm2 SINE B2 46 109 -107 3 1444 267 382 27 27 chr5 112679613 112679761 -39857498 - MER3 DNA MER1_type -60 149 2 3 1444 437 243 54 36 chr5 112680414 112680525 -39856734 - PB1D10 SINE Alu -2 115 3 3 1444 368 268 49 44 chr5 112681044 112681247 -39856012 - RMER12 LTR ERVK -348 974 771 3 1444 26 0 0 0 chr5 112682141 112682167 -39855092 + GC_rich Low_complexity Low_complexity 1 26 0 3 1444 463 173 167 38 chr5 112682566 112682698 -39854561 + RSINE1 SINE B4 17 165 0 3 1444 342 181 0 0 chr5 112682706 112682811 -39854448 + (CA)n Simple_repeat Simple_repeat 1 105 0 3 1444 595 161 124 50 chr5 112683062 112683206 -39854053 + ID_B1 SINE B4 69 223 -1 3 1444 382 235 0 0 chr5 112684972 112685057 -39852202 + PB1D7 SINE Alu 10 94 -26 3 1444 1239 29 0 0 chr5 112686233 112686372 -39850887 - B1_Mus1 SINE Alu -9 139 1 3 1444 304 341 6 23 chr5 112686612 112686789 -39850470 + CT-rich Low_complexity Low_complexity 1 174 0 3 1444 302 235 10 0 chr5 112687505 112687607 -39849652 + GA-rich Low_complexity Low_complexity 2 104 0 3 1444 374 280 42 0 chr5 112687879 112687997 -39849262 + B1_Mus1 SINE Alu 10 132 -16 3 1444 843 132 0 0 chr5 112688689 112688863 -39848396 + (GA)n Simple_repeat Simple_repeat 1 174 0 3 1444 669 58 0 0 chr5 112690119 112690205 -39847054 + (TCC)n Simple_repeat Simple_repeat 2 87 0 3 1444 1427 109 0 0 chr5 112690205 112690398 -39846861 - B2_Mm2 SINE B2 -1 194 2 3 1444 756 158 0 0 chr5 112690410 112690543 -39846716 + CT-rich Low_complexity Low_complexity 3 135 0 3 1444 271 330 26 35 chr5 112690545 112690658 -39846601 - MIRm SINE MIR -145 131 20 3 1444 351 356 6 12 chr5 112690791 112690956 -39846303 + (TCCA)n Simple_repeat Simple_repeat 2 165 0 3 1444 242 368 16 0 chr5 112690877 112691002 -39846257 + (TTCA)n Simple_repeat Simple_repeat 3 129 0 3 1444 917 141 18 0 chr5 112691039 112691262 -39845997 + (TCCA)n Simple_repeat Simple_repeat 1 227 0 3 1444 335 261 51 51 chr5 112691809 112691926 -39845333 - PB1D10 SINE Alu 0 117 1 3 1444 348 252 53 100 chr5 112692904 112693054 -39844205 + ID_B1 SINE B4 34 176 -48 3 1444 382 274 9 9 chr5 112692969 112693076 -39844183 + PB1D10 SINE Alu 11 117 0 3 1444 946 136 74 34 chr5 112693580 112693755 -39843504 - URR1A DNA MER1_type -39 187 6 3 1444 226 342 60 85 chr5 112693980 112694181 -39843078 + MER33 DNA MER1_type 35 230 -94 3 1444 640 233 7 20 chr5 112694492 112694641 -39842618 + B1_Mur1 SINE Alu 3 149 0 3 1444 262 337 99 5 chr5 112695475 112695666 -39841593 - MIRc SINE MIR -6 262 54 3 1444 237 254 180 13 chr5 112695807 112695925 -39841334 - MIRc SINE MIR -91 185 48 3 1444 359 237 6 55 chr5 112696605 112696628 -39840631 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1444 213 39 0 0 chr5 112696628 112696654 -39840605 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 1444 359 237 6 55 chr5 112696654 112696813 -39840446 + (CA)n Simple_repeat Simple_repeat 1 151 0 3 1444 368 236 8 24 chr5 112696952 112697078 -39840181 + (CA)n Simple_repeat Simple_repeat 1 124 0 3 1444 187 167 0 67 chr5 112698143 112698188 -39839071 - MIR SINE MIR -63 145 104 3 1444 370 330 64 96 chr5 112698734 112698952 -39838307 - ID_B1 SINE B4 -12 212 2 3 1444 216 0 0 0 chr5 112698976 112699000 -39838259 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1444 1118 66 0 0 chr5 112699000 112699137 -39838122 - B1_Mus1 SINE Alu -11 137 1 3 1444 231 208 82 14 chr5 112699165 112699238 -39838021 + B4 SINE B4 3 80 -212 3 1444 581 269 103 0 chr5 112699173 112699348 -39837911 + B3 SINE B2 10 202 -14 3 1444 288 0 0 0 chr5 112699348 112699380 -39837879 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1444 534 188 10 0 chr5 112699382 112699478 -39837781 - PB1D10 SINE Alu -20 97 1 3 1444 218 295 92 37 chr5 112699523 112699632 -39837627 - MIR SINE MIR -119 143 29 3 1444 493 238 0 0 chr5 112701080 112701181 -39836078 - ID_B1 SINE B4 -26 198 98 3 1444 836 246 30 10 chr5 112701431 112701628 -39835631 + ID_B1 SINE B4 4 204 -20 3 1444 199 203 17 17 chr5 112701630 112701690 -39835569 + GA-rich Low_complexity Low_complexity 1 60 0 3 1444 364 223 105 11 chr5 112702598 112702693 -39834566 + PB1D10 SINE Alu 1 104 -13 3 1444 396 0 0 0 chr5 112702695 112702739 -39834520 + (TAA)n Simple_repeat Simple_repeat 2 45 0 3 1444 305 339 26 9 chr5 112702745 112702858 -39834401 + B4 SINE B4 6 120 -172 3 1444 279 0 0 0 chr5 112702926 112702957 -39834302 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1444 336 270 71 28 chr5 112703182 112703327 -39833932 + MIRb SINE MIR 67 216 -46 3 1444 190 75 0 70 chr5 112703334 112703377 -39833882 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3 1444 23 0 0 0 chr5 112704254 112704277 -39832982 + GC_rich Low_complexity Low_complexity 1 23 0 3 1444 288 0 0 0 chr5 112704713 112704745 -39832514 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 3 1444 453 223 24 20 chr5 112704872 112704996 -39832263 - RSINE1 SINE B4 -39 126 1 3 1444 21 36 0 0 chr5 112704999 112705027 -39832232 + AT_rich Low_complexity Low_complexity 1 28 0 3 1444 346 236 221 26 chr5 112705029 112705142 -39832117 - RSINE1 SINE B4 -19 146 12 3 1444 313 286 76 59 chr5 112706478 112706716 -39830543 - L1MB7 LINE L1 -9 6175 5934 4 1444 324 228 299 20 chr5 112706744 112706767 -39830492 - L1MB7 LINE L1 -379 5805 5783 4 1444 261 0 0 0 chr5 112706767 112706796 -39830463 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1444 324 228 299 20 chr5 112706796 112706973 -39830286 - L1MB7 LINE L1 -402 5782 5549 4 1444 410 243 48 0 chr5 112707003 112707106 -39830153 - PB1D10 SINE Alu -9 108 1 4 1444 192 77 0 0 chr5 112707413 112707439 -39829820 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1444 782 251 40 10 chr5 112707463 112707664 -39829595 - ID_B1 SINE B4 -10 214 8 4 1444 534 360 23 60 chr5 112707685 112707901 -39829358 - B4 SINE B4 0 292 85 4 1444 427 274 53 9 chr5 112707901 112708015 -39829244 - PB1D9 SINE Alu 0 120 2 4 1444 534 360 23 60 chr5 112708015 112708099 -39829160 - B4 SINE B4 -208 84 3 4 1444 204 289 109 15 chr5 112709339 112709476 -39827783 + MIR3 SINE MIR 2 151 -57 4 1444 251 250 0 19 chr5 112709539 112709592 -39827667 - ID4_ SINE ID -20 63 12 4 1444 618 268 22 0 chr5 112709614 112709752 -39827507 - B1F SINE Alu -8 141 1 4 1444 335 271 82 0 chr5 112710981 112711103 -39826156 + Tigger7 DNA MER2_type 2332 2463 -28 4 1444 826 265 83 29 chr5 112712230 112712506 -39824753 - B4A SINE B4 0 292 2 4 1444 214 210 0 46 chr5 112712617 112712682 -39824577 + CT-rich Low_complexity Low_complexity 5 66 0 4 1444 415 188 19 29 chr5 112713029 112713133 -39824126 - B1_Mur4 SINE Alu -5 145 43 4 1444 852 259 157 13 chr5 112714105 112714418 -39822841 - MTEa LTR MaLR 0 379 22 4 1444 1519 57 16 5 chr5 112715130 112715323 -39821936 - B2_Mm2 SINE B2 0 195 1 4 1444 227 304 0 59 chr5 112715520 112715630 -39821629 - MIRc SINE MIR -125 151 49 4 1444 387 0 0 0 chr5 112715833 112715876 -39821383 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1444 388 306 93 0 chr5 112715876 112715984 -39821275 - ID_B1 SINE B4 -26 198 81 4 1444 294 50 0 0 chr5 112716559 112716599 -39820660 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 4 1444 494 206 0 21 chr5 112718071 112718165 -39819094 + RSINE1 SINE B4 26 117 -48 4 1444 534 16 0 0 chr5 112718175 112718238 -39819021 + (TG)n Simple_repeat Simple_repeat 2 64 0 4 1444 297 0 0 0 chr5 112718296 112718329 -39818930 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1444 222 37 0 0 chr5 112718366 112718393 -39818866 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1444 480 278 41 7 chr5 112718557 112718702 -39818557 - B4A SINE B4 -124 168 19 4 1444 216 255 0 0 chr5 112720453 112720500 -39816759 + C-rich Low_complexity Low_complexity 3 49 0 4 1444 249 228 38 0 chr5 112720717 112720802 -39816457 - MIR SINE MIR -149 119 32 4 1444 194 257 8 31 chr5 112720843 112720908 -39816351 + MIRb SINE MIR 107 175 -87 4 1445 362 248 56 19 chr5 112722798 112722905 -39814354 + PB1D10 SINE Alu 5 115 -2 4 1445 189 0 0 0 chr5 112723623 112723644 -39813615 + (CAG)n Simple_repeat Simple_repeat 1 21 0 4 1445 194 284 30 0 chr5 112724885 112724952 -39812307 + MIRb SINE MIR 109 177 -91 4 1445 417 161 42 2 chr5 112724956 112725045 -39812214 - B1_Mm SINE Alu -47 102 10 4 1445 213 192 19 37 chr5 112725235 112725289 -39811970 - MIRc SINE MIR -120 148 96 4 1445 204 191 62 31 chr5 112725425 112725490 -39811769 - L3 LINE CR1 -633 3856 3790 4 1445 439 305 53 0 chr5 112726617 112726748 -39810511 - ID_B1 SINE B4 0 224 87 4 1445 277 246 126 1 chr5 112726842 112726938 -39810321 + B1_Mus1 SINE Alu 3 106 -11 4 1445 364 225 0 101 chr5 112727240 112727339 -39809920 + PB1D7 SINE Alu 17 105 -15 4 1445 201 39 0 0 chr5 112727459 112727485 -39809774 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1445 333 102 0 0 chr5 112727487 112727546 -39809713 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 4 1445 236 298 40 17 chr5 112729191 112729365 -39807894 + (TCCTG)n Simple_repeat Simple_repeat 2 179 0 4 1445 336 286 0 33 chr5 112729300 112729481 -39807778 + (CCTG)n Simple_repeat Simple_repeat 4 178 0 4 1445 274 224 15 0 chr5 112729970 112730037 -39807222 - B1F SINE Alu -15 134 67 4 1445 332 241 0 37 chr5 112729978 112730060 -39807199 - ID_B1 SINE B4 -21 203 125 4 1445 184 138 0 0 chr5 112730102 112730131 -39807128 + L2b LINE L2 3332 3360 -15 4 1445 204 97 0 0 chr5 112731120 112731151 -39806108 + (TCC)n Simple_repeat Simple_repeat 1 31 0 4 1445 518 231 37 15 chr5 112731184 112731320 -39805939 - RSINE1 SINE B4 -24 141 3 4 1445 254 310 77 34 chr5 112731604 112731721 -39805538 + MER3 DNA MER1_type 41 162 -47 4 1445 198 0 0 0 chr5 112732073 112732095 -39805164 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1445 210 143 0 0 chr5 112733062 112733097 -39804162 + (CGGG)n Simple_repeat Simple_repeat 2 36 0 4 1445 272 226 70 23 chr5 112733117 112733203 -39804056 + PB1D10 SINE Alu 13 102 -47 4 1445 202 324 59 0 chr5 112733306 112733374 -39803885 - MIRb SINE MIR -179 89 18 4 1445 220 345 53 0 chr5 112734420 112734533 -39802726 + L2b LINE L2 3004 3122 -253 4 1445 215 303 122 12 chr5 112735369 112735552 -39801707 + MIRb SINE MIR 33 218 -44 4 1445 369 0 0 0 chr5 112735605 112735646 -39801613 + (CTTG)n Simple_repeat Simple_repeat 2 42 0 4 1445 766 236 154 11 chr5 112735646 112735834 -39801425 - ID_B1 SINE B4 -6 218 4 4 1445 224 228 17 17 chr5 112736280 112736338 -39800921 - PB1D10 SINE Alu -45 72 15 4 1445 284 206 36 16 chr5 112737541 112737633 -39799626 + MIRc SINE MIR 63 153 -55 4 1445 563 236 7 54 chr5 112737857 112738005 -39799254 + RSINE1 SINE B4 1 141 -24 4 1445 189 0 0 0 chr5 112738030 112738051 -39799208 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1445 204 167 24 0 chr5 112738054 112738096 -39799163 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4 1445 459 252 89 59 chr5 112738099 112738335 -39798924 + B4A SINE B4 1 243 -49 4 1445 340 333 17 8 chr5 112738390 112738508 -39798751 + (CATA)n Simple_repeat Simple_repeat 1 119 0 4 1445 522 70 0 0 chr5 112739232 112739303 -39797956 + (TG)n Simple_repeat Simple_repeat 2 72 0 4 1445 284 270 0 0 chr5 112739567 112739630 -39797629 + ID4_ SINE ID 10 72 -11 4 1445 423 0 0 0 chr5 112739697 112739744 -39797515 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1445 270 125 0 0 chr5 112739744 112739791 -39797468 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1445 293 225 8 30 chr5 112740401 112740534 -39796725 + (TGGA)n Simple_repeat Simple_repeat 3 132 0 4 1445 248 210 12 0 chr5 112740566 112740647 -39796612 + (TGGA)n Simple_repeat Simple_repeat 1 82 0 4 1445 1169 78 6 0 chr5 112740840 112741006 -39796253 + (TGGA)n Simple_repeat Simple_repeat 1 167 0 4 1445 865 238 115 16 chr5 112741495 112741747 -39795512 - B4A SINE B4 0 292 16 4 1445 1235 61 0 0 chr5 112743533 112743680 -39793579 + B1_Mus2 SINE Alu 1 147 0 4 1445 690 196 14 7 chr5 112743706 112743845 -39793414 + B1_Mur2 SINE Alu 9 148 -1 4 1445 407 307 76 84 chr5 112745045 112745308 -39791951 - MTEa LTR MaLR -116 263 3 4 1445 290 234 59 47 chr5 112746697 112746782 -39790477 + RSINE1 SINE B4 28 113 -52 4 1445 279 0 0 0 chr5 112746784 112746815 -39790444 + (TC)n Simple_repeat Simple_repeat 1 31 0 4 1445 399 41 0 0 chr5 112746815 112746863 -39790396 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1445 493 257 25 42 chr5 112746962 112747080 -39790179 + PB1D10 SINE Alu 1 116 -1 4 1445 485 200 28 19 chr5 112747081 112747188 -39790071 + PB1D9 SINE Alu 3 110 -10 4 1445 274 328 0 0 chr5 112747393 112747460 -39789799 + MTE2a LTR MaLR 75 141 -238 4 1445 467 310 106 12 chr5 112747560 112747815 -39789444 + MT2A LTR ERVL 248 526 -7 4 1445 528 345 26 95 chr5 112747814 112748045 -39789214 + B4A SINE B4 19 233 -59 4 1445 255 254 70 0 chr5 112748081 112748152 -39789107 + MT2A LTR ERVL 248 323 -210 4 1445 315 0 0 0 chr5 112748191 112748226 -39789033 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1445 2073 83 10 15 chr5 112748252 112748587 -39788672 - ORR1A2 LTR MaLR 0 327 1 4 1445 491 151 0 0 chr5 112748588 112748674 -39788585 - ORR1A2 LTR MaLR -240 87 2 4 1445 440 155 134 16 chr5 112748686 112748809 -39788450 + B1_Mur1 SINE Alu 3 132 -17 4 1445 294 330 42 25 chr5 112749044 112749162 -39788097 - MLT1G LTR MaLR -287 304 185 4 1445 927 91 0 8 chr5 112749146 112749279 -39787980 - B2_Mm2 SINE B2 -62 133 2 4 1445 538 296 33 0 chr5 112749469 112749621 -39787638 - B4 SINE B4 -45 247 91 4 1445 498 196 28 0 chr5 112749605 112749712 -39787547 - B1_Mus2 SINE Alu -37 110 1 4 1445 379 247 247 0 chr5 112749712 112749764 -39787495 - B4 SINE B4 -199 93 4 4 1445 1059 202 5 32 chr5 112749796 112750016 -39787243 - B3 SINE B2 -2 214 1 4 1445 773 196 0 59 chr5 112750764 112750916 -39786343 - B1_Mus1 SINE Alu -4 144 2 4 1445 954 136 11 11 chr5 112751047 112751226 -39786033 + GA-rich Low_complexity Low_complexity 2 180 0 4 1445 1849 179 178 50 chr5 112751235 112751736 -39785523 + MT2B LTR ERVL 1 565 -36 4 1445 297 0 0 0 chr5 112752082 112752115 -39785144 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 4 1445 264 274 97 46 chr5 112752133 112752271 -39784988 + MTD LTR MaLR 1 124 -295 4 1445 408 255 8 94 chr5 112752423 112752540 -39784719 - RLTR33 LTR ERVK -85 593 487 4 1445 412 177 0 0 chr5 112752640 112752719 -39784540 - RLTR19C LTR ERVK -409 97 19 4 1445 354 244 201 49 chr5 112752713 112752877 -39784382 + MTD LTR MaLR 96 284 -135 4 1445 1064 148 175 0 chr5 112752918 112753107 -39784152 - URR1B DNA MER1_type -3 222 1 4 1445 257 128 21 0 chr5 112753268 112753315 -39783944 + (TCC)n Simple_repeat Simple_repeat 2 49 0 4 1445 465 185 147 9 chr5 112753320 112753429 -39783830 - B1_Mur2 SINE Alu -15 134 11 4 1445 243 0 0 0 chr5 112753493 112753520 -39783739 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1445 1053 209 244 9 chr5 112754217 112754541 -39782718 - MTD LTR MaLR -2 417 18 5 1445 918 121 8 0 chr5 112754695 112754827 -39782432 + B1_Mur4 SINE Alu 5 137 -13 5 1445 1005 88 19 39 chr5 112754830 112754996 -39782263 - B1_Mus1 SINE Alu 0 311 7 5 1445 194 128 0 25 chr5 112755740 112755780 -39781479 + GA-rich Low_complexity Low_complexity 2 40 0 5 1445 222 304 0 0 chr5 112756044 112756113 -39781146 + T-rich Low_complexity Low_complexity 1 69 0 5 1445 612 173 15 73 chr5 112756113 112756250 -39781009 - B1_Mm SINE Alu 0 147 19 5 1445 300 201 12 31 chr5 112756295 112756373 -39780886 - B1_Mur4 SINE Alu -39 110 31 5 1445 369 0 0 0 chr5 112757689 112757730 -39779529 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1445 450 201 71 65 chr5 112758068 112758222 -39779037 + B3A SINE B2 2 156 -42 5 1445 525 227 0 0 chr5 112761113 112761360 -39775899 + (TG)n Simple_repeat Simple_repeat 1 247 0 5 1445 1439 56 39 0 chr5 112764334 112764513 -39772746 - B2_Mm2 SINE B2 -8 187 2 5 1445 1173 120 393 0 chr5 112765209 112765443 -39771816 - ORR1A3 LTR MaLR 0 326 1 5 1445 371 258 136 43 chr5 112765505 112765667 -39771592 - B3A SINE B2 -4 191 15 5 1445 235 361 0 0 chr5 112767375 112767458 -39769801 + RMER20B LTR ERVK 351 433 -194 5 1445 315 262 0 15 chr5 112768169 112768235 -39769024 - L1MEg LINE L1 -4137 1947 1883 5 1445 881 83 106 0 chr5 112768235 112768367 -39768892 - B1_Mus2 SINE Alu 0 147 2 5 1445 795 187 240 0 chr5 112768372 112768543 -39768716 - B3 SINE B2 0 216 5 5 1445 301 309 12 0 chr5 112771507 112771588 -39765671 + RSINE1 SINE B4 13 94 -71 5 1445 21 36 0 0 chr5 112771943 112771971 -39765288 + GC_rich Low_complexity Low_complexity 1 28 0 5 1445 456 250 37 0 chr5 112772617 112772725 -39764534 - PB1D9 SINE Alu -8 112 1 5 1445 804 73 180 31 chr5 112772844 112772961 -39764298 + B1_Mus1 SINE Alu 1 140 -8 5 1445 186 43 0 0 chr5 112772961 112772984 -39764275 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1445 415 205 26 0 chr5 112774219 112774297 -39762962 + ID4 SINE ID 2 81 -2 5 1445 323 162 36 36 chr5 112774943 112775026 -39762233 + PB1D7 SINE Alu 25 107 -13 5 1445 23 0 0 0 chr5 112775949 112775972 -39761287 + AT_rich Low_complexity Low_complexity 1 23 0 5 1445 1129 126 0 37 chr5 112776038 112776227 -39761032 + B2_Mm2 SINE B2 11 192 -3 5 1445 743 228 92 48 chr5 112777035 112777242 -39760017 - B3 SINE B2 0 216 1 5 1445 3996 111 12 87 chr5 112777344 112778101 -39759158 - RMER6A LTR ERVK 0 756 57 5 1445 918 42 0 0 chr5 112778135 112778254 -39759005 + (CA)n Simple_repeat Simple_repeat 1 119 0 5 1445 259 266 25 12 chr5 112778685 112778765 -39758494 + (TATATG)n Simple_repeat Simple_repeat 6 86 0 5 1445 340 347 116 8 chr5 112778794 112779035 -39758224 - L1M5 LINE L1 -970 5176 4910 5 1445 476 183 11 21 chr5 112779712 112779807 -39757452 + PB1D9 SINE Alu 2 95 -25 5 1445 808 184 33 0 chr5 112779805 112779957 -39757302 + B3 SINE B2 59 215 -1 5 1445 577 265 61 0 chr5 112780020 112780152 -39757107 + RSINE1 SINE B4 3 142 -23 5 1445 299 167 19 0 chr5 112780322 112780376 -39756883 - B1F2 SINE Alu -92 57 3 5 1445 273 89 0 0 chr5 112780417 112780462 -39756797 + (GA)n Simple_repeat Simple_repeat 1 45 0 5 1445 333 0 0 0 chr5 112780471 112780508 -39756751 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1445 645 272 0 0 chr5 112780508 112780655 -39756604 - RSINE1 SINE B4 -16 149 3 5 1445 538 308 22 109 chr5 112780986 112781390 -39755869 - L1M3 LINE L1 -1676 4464 4096 5 1445 228 320 55 98 chr5 112781501 112781664 -39755595 - L1M3 LINE L1 -2211 3929 3774 5 1445 610 156 0 62 chr5 112781665 112781795 -39755464 - B1_Mur4 SINE Alu -21 129 8 5 1445 189 74 0 0 chr5 112781880 112781907 -39755352 + (TTTTTA)n Simple_repeat Simple_repeat 5 31 0 5 1445 1191 81 0 0 chr5 112781907 112782055 -39755204 - B1_Mus1 SINE Alu 0 148 1 5 1445 664 266 101 21 chr5 112787160 112787398 -39749861 - B4A SINE B4 0 292 36 5 1445 405 0 0 0 chr5 112787658 112787703 -39749556 + (TGG)n Simple_repeat Simple_repeat 3 47 0 5 1445 2450 148 27 2 chr5 112788837 112789243 -39748016 - MTC LTR MaLR -5 416 1 5 1445 589 219 0 8 chr5 112789245 112789365 -39747894 - RMER15 LTR ERVL -42 533 415 5 1445 1024 191 73 28 chr5 112789375 112789623 -39747636 - RLTR22_Mur LTR ERVK 0 1848 1590 5 1445 2955 150 69 61 chr5 112789699 112789942 -39747317 - RLTR22_Mur LTR ERVK -965 883 662 5 1445 1259 48 0 0 chr5 112789942 112790089 -39747170 + B1_Mus1 SINE Alu 2 148 0 5 1445 2955 150 69 61 chr5 112790089 112790582 -39746677 - RLTR22_Mur LTR ERVK -1187 661 141 5 1445 1178 61 0 45 chr5 112790582 112790597 -39746662 - B1_Mus1 SINE Alu -1 147 139 5 1445 189 0 0 0 chr5 112790597 112790618 -39746641 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1445 1178 61 0 45 chr5 112790618 112790756 -39746503 - B1_Mus1 SINE Alu -10 138 1 5 1445 297 0 0 0 chr5 112790761 112790794 -39746465 + (TTA)n Simple_repeat Simple_repeat 3 35 0 5 1445 1072 79 0 7 chr5 112790795 112790948 -39746311 - B2_Mm2 SINE B2 -43 152 1 5 1445 602 207 40 46 chr5 112790949 112791101 -39746158 - RLTR22_Mur LTR ERVK -1697 151 1 5 1445 1385 151 214 24 chr5 112791105 112791437 -39745822 - RMER15 LTR ERVL -154 421 27 5 1445 392 283 168 0 chr5 112791913 112792026 -39745233 - B1F SINE Alu -17 132 1 5 1445 724 242 19 25 chr5 112794234 112794395 -39742864 + RSINE1 SINE B4 3 162 -3 5 1445 324 48 0 0 chr5 112794399 112794441 -39742818 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1445 3116 53 10 53 chr5 112794481 112794899 -39742360 - MTB LTR MaLR 0 400 1 5 1445 798 73 66 7 chr5 112794899 112794956 -39742303 - MTB-int LTR MaLR 0 1098 1042 5 1445 482 107 29 19 chr5 112794956 112794972 -39742287 - L1Md_F2 LINE L1 -6 6576 6561 5 1445 213 65 0 0 chr5 112794972 112795003 -39742256 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 5 1445 482 107 29 19 chr5 112795003 112795091 -39742168 - L1Md_F2 LINE L1 -22 6560 6472 5 1445 798 73 66 7 chr5 112795091 112795170 -39742089 - MTB-int LTR MaLR -57 1041 955 5 1445 638 35 0 23 chr5 112795170 112795258 -39742001 - MTA_Mm LTR MaLR -310 86 1 5 1445 373 221 70 0 chr5 112795259 112795345 -39741914 - B1_Mur2 SINE Alu -40 109 18 5 1445 195 129 0 0 chr5 112796422 112796453 -39740806 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 5 1445 667 159 85 23 chr5 112796556 112796685 -39740574 + B1_Mur2 SINE Alu 6 142 -7 5 1445 240 35 0 0 chr5 112796747 112796776 -39740483 + (CCTG)n Simple_repeat Simple_repeat 2 30 0 5 1445 213 39 0 0 chr5 112796780 112796806 -39740453 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 5 1445 286 266 25 74 chr5 112796828 112796950 -39740309 - PB1D10 SINE Alu -1 116 1 5 1445 1541 202 76 60 chr5 112800427 112800969 -39736290 - RMER4A LTR ERVK 0 585 6 5 1445 414 232 132 50 chr5 112803449 112803608 -39733651 + B3A SINE B2 2 173 -22 5 1445 670 232 21 0 chr5 112803615 112803757 -39733502 + B1F2 SINE Alu 5 149 0 5 1445 226 239 0 21 chr5 112805988 112806082 -39731177 + (TG)n Simple_repeat Simple_repeat 1 92 0 5 1445 438 289 53 0 chr5 112806097 112806211 -39731048 - RSINE1 SINE B4 0 165 46 5 1445 243 0 0 0 chr5 112808440 112808467 -39728792 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1445 288 324 18 26 chr5 112808547 112808661 -39728598 - B4A SINE B4 -169 123 11 5 1445 304 281 85 8 chr5 112808660 112808789 -39728470 + B1F1 SINE Alu 10 148 -1 5 1445 257 241 89 0 chr5 112808902 112808981 -39728278 + MLT1F1 LTR MaLR 308 393 -176 5 1445 417 20 0 0 chr5 112811333 112811383 -39725876 + (TC)n Simple_repeat Simple_repeat 2 51 0 5 1445 464 262 45 32 chr5 112811416 112811570 -39725689 + ZP3AR Satellite Satellite 47 202 -10 5 1445 405 0 0 0 chr5 112811975 112812020 -39725239 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1445 335 47 0 0 chr5 112812048 112812091 -39725168 - HAL1-3A_ME LINE L1 -846 2012 1970 5 1445 264 325 16 16 chr5 112812198 112812320 -39724939 - MLT1K LTR MaLR -7 588 467 5 1445 247 213 0 0 chr5 112812594 112812641 -39724618 + ID4_ SINE ID 37 83 0 5 1445 1098 76 14 0 chr5 112812910 112813055 -39724204 - B1_Mus1 SINE Alu -1 147 1 5 1445 313 175 16 0 chr5 112813156 112813219 -39724040 - ID4 SINE ID -11 72 9 5 1445 463 82 31 21 chr5 112815040 112815137 -39722122 + ORR1A2 LTR MaLR 3 117 -277 5 1445 336 203 0 5 chr5 112815129 112815220 -39722039 + ORR1A2 LTR MaLR 28 141 -253 5 1445 259 179 0 29 chr5 112815201 112815270 -39721989 + ORR1A2 LTR MaLR 44 110 -257 5 1445 936 172 1 40 chr5 112815241 112815490 -39721769 + ORR1A2 LTR MaLR 17 212 -134 5 1445 2194 122 109 45 chr5 112816111 112816507 -39720752 + MTC LTR MaLR 1 421 0 5 1445 340 200 167 0 chr5 112816631 112816721 -39720538 - PB1D10 SINE Alu -38 111 7 5 1445 289 109 0 0 chr5 112816843 112816889 -39720370 - B4 SINE B4 -246 46 1 5 1445 180 0 0 0 chr5 112817172 112817192 -39720067 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1445 1244 48 0 0 chr5 112817192 112817337 -39719922 - B1_Mus2 SINE Alu -2 145 1 5 1445 274 194 32 0 chr5 112817772 112817834 -39719425 + ID4 SINE ID 4 67 -16 5 1445 282 349 105 33 chr5 112819135 112819316 -39717943 - MER3 DNA MER1_type -14 195 2 5 1445 188 0 74 0 chr5 112819509 112819536 -39717723 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1445 1151 62 0 7 chr5 112819536 112819675 -39717584 - B1_Mus1 SINE Alu -7 141 3 5 1445 22 0 0 0 chr5 112819678 112819700 -39717559 + AT_rich Low_complexity Low_complexity 1 22 0 5 1445 662 300 100 34 chr5 112819705 112819974 -39717285 + B4 SINE B4 2 288 -4 5 1445 311 279 0 44 chr5 112819986 112820076 -39717183 - PB1D10 SINE Alu -31 86 1 5 1445 210 254 14 29 chr5 112823510 112823579 -39713680 + GA-rich Low_complexity Low_complexity 2 69 0 5 1445 209 186 33 44 chr5 112823788 112823878 -39713381 + (CCGCG)n Simple_repeat Simple_repeat 5 93 0 5 1445 36 53 0 0 chr5 112823898 112823955 -39713304 + GC_rich Low_complexity Low_complexity 1 57 0 5 1445 217 293 0 35 chr5 112824063 112824148 -39713111 + C-rich Low_complexity Low_complexity 2 83 0 5 1445 361 353 100 33 chr5 112824806 112825105 -39712154 - ORR1E LTR MaLR -12 347 29 6 1445 565 358 54 11 chr5 112825297 112825574 -39711685 - MamRep4096 DNA hAT? -136 290 2 6 1445 726 185 15 8 chr5 112825854 112826118 -39711141 + (TG)n Simple_repeat Simple_repeat 1 266 0 6 1445 249 309 0 0 chr5 112826414 112826566 -39710693 + (TG)n Simple_repeat Simple_repeat 1 152 0 6 1445 265 273 90 13 chr5 112826819 112826897 -39710362 + B1F SINE Alu 17 100 -49 6 1445 670 285 175 43 chr5 112827054 112827311 -39709948 + B4A SINE B4 2 292 0 6 1445 398 266 0 14 chr5 112827322 112827467 -39709792 + (CATA)n Simple_repeat Simple_repeat 4 146 0 6 1445 1230 163 35 5 chr5 112827504 112827701 -39709558 + B3 SINE B2 3 205 -11 6 1445 261 128 0 0 chr5 112828022 112828069 -39709190 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1445 424 241 46 0 chr5 112828074 112828182 -39709077 + MTEa LTR MaLR 1 113 -266 6 1445 296 194 44 15 chr5 112828705 112828773 -39708486 + ORR1E LTR MaLR 50 119 -240 6 1445 293 317 50 8 chr5 112829313 112829434 -39707825 + MLT1A1 LTR MaLR 278 403 -5 6 1445 532 270 189 25 chr5 112829673 112829916 -39707343 + B4 SINE B4 2 284 -8 6 1445 543 252 38 0 chr5 112830108 112830239 -39707020 - B1_Mur1 SINE Alu -1 148 13 6 1445 235 308 86 109 chr5 112830115 112830290 -39706969 - B4 SINE B4 -74 218 48 6 1445 662 259 46 0 chr5 112830504 112830678 -39706581 - MTE2a LTR MaLR 0 379 198 6 1445 747 134 79 0 chr5 112830685 112830812 -39706447 + B1_Mur3 SINE Alu 13 149 0 6 1445 339 312 40 27 chr5 112830686 112830834 -39706425 + B4A SINE B4 99 248 -44 6 1445 649 251 126 0 chr5 112830877 112831060 -39706199 - MTE2a LTR MaLR -173 206 1 6 1445 23 0 0 0 chr5 112831062 112831085 -39706174 + AT_rich Low_complexity Low_complexity 1 23 0 6 1445 1508 78 5 0 chr5 112831098 112831289 -39705970 + B2_Mm1a SINE B2 1 192 -1 6 1445 216 137 40 14 chr5 112831318 112831392 -39705867 + A-rich Low_complexity Low_complexity 1 76 0 6 1445 375 232 115 9 chr5 112831393 112831506 -39705753 + RSINE1 SINE B4 1 125 -40 6 1445 572 179 6 13 chr5 112831889 112832387 -39704872 + (TG)n Simple_repeat Simple_repeat 1 494 0 6 1445 254 213 0 96 chr5 112832387 112832470 -39704789 - B4A SINE B4 0 292 218 6 1445 245 265 112 15 chr5 112832477 112832611 -39704648 - Lx8 LINE L1 -8 7465 7319 6 1445 227 178 41 0 chr5 112832633 112832735 -39704524 + (TTAA)n Simple_repeat Simple_repeat 1 106 0 6 1445 198 0 0 0 chr5 112832740 112832762 -39704497 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 6 1445 732 268 150 4 chr5 112832763 112833003 -39704256 - Lx8 LINE L1 -141 7332 7058 6 1445 718 227 133 34 chr5 112833049 112833282 -39703977 - MTD LTR MaLR -3 416 161 6 1445 186 43 0 0 chr5 112834062 112834085 -39703174 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1445 284 161 12 36 chr5 112834177 112834261 -39702998 + (TG)n Simple_repeat Simple_repeat 2 83 0 6 1445 515 196 23 17 chr5 112834293 112834469 -39702790 + (TATG)n Simple_repeat Simple_repeat 4 180 0 6 1445 552 42 0 0 chr5 112834530 112834601 -39702658 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 6 1445 190 338 126 7 chr5 112834857 112835000 -39702259 + MIRb SINE MIR 63 222 -46 6 1445 602 203 70 32 chr5 112835310 112835468 -39701791 + RSINE1 SINE B4 2 165 0 6 1445 278 247 11 27 chr5 112835614 112835797 -39701462 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1445 579 205 26 13 chr5 112835828 112836303 -39700956 + (CA)n Simple_repeat Simple_repeat 1 481 0 6 1445 247 234 98 63 chr5 112836703 112836812 -39700447 - MTE2b LTR MaLR -18 361 243 6 1445 705 24 0 0 chr5 112836986 112837069 -39700190 + (GGA)n Simple_repeat Simple_repeat 2 84 0 6 1445 351 243 96 41 chr5 112837240 112837386 -39699873 - MTD LTR MaLR 0 419 266 6 1445 634 172 44 15 chr5 112837393 112837529 -39699730 + B1_Mur1 SINE Alu 9 148 -1 6 1445 825 194 223 9 chr5 112837534 112837758 -39699501 - MTD LTR MaLR -147 272 1 6 1445 286 176 95 2 chr5 112839174 112839249 -39698010 - B1F SINE Alu -10 139 60 6 1445 414 0 0 0 chr5 112839475 112839521 -39697738 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1445 950 25 8 0 chr5 112839521 112839642 -39697617 - B1_Mm SINE Alu -12 135 14 6 1445 428 222 103 0 chr5 112839666 112839783 -39697476 - B4A SINE B4 -119 173 45 6 1445 242 302 85 0 chr5 112839922 112840028 -39697231 - PB1D9 SINE Alu -5 115 1 6 1445 375 275 64 0 chr5 112841759 112841868 -39695391 - PB1D10 SINE Alu 0 117 2 6 1445 2055 94 13 7 chr5 112841985 112842284 -39694975 + ORR1A2 LTR MaLR 27 327 0 6 1445 458 320 6 56 chr5 112842398 112842510 -39694749 + RSINE1 SINE B4 12 124 -41 6 1445 306 0 0 0 chr5 112842510 112842544 -39694715 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1445 458 320 6 56 chr5 112842544 112842593 -39694666 + RSINE1 SINE B4 125 165 0 6 1445 405 219 0 0 chr5 112842593 112842748 -39694511 + (CA)n Simple_repeat Simple_repeat 1 155 0 6 1445 790 136 0 67 chr5 112843228 112843378 -39693881 - B1_Mus1 SINE Alu -8 140 1 6 1445 963 255 65 63 chr5 112843441 112843961 -39693298 - L1MA5 LINE L1 -360 5940 5420 6 1445 397 138 11 11 chr5 112844612 112844707 -39692552 + CT-rich Low_complexity Low_complexity 2 96 0 6 1445 297 0 0 0 chr5 112844716 112844749 -39692510 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1445 283 162 0 0 chr5 112844964 112845032 -39692227 - MT2A LTR ERVL 0 533 466 6 1445 738 189 0 0 chr5 112845069 112845244 -39692015 + (CA)n Simple_repeat Simple_repeat 1 175 0 6 1445 375 186 0 0 chr5 112845277 112845347 -39691912 - MT2A LTR ERVL -400 133 64 6 1445 248 291 0 34 chr5 112845281 112845370 -39691889 - MTE2b LTR MaLR -250 129 44 6 1445 364 256 23 0 chr5 112846162 112846248 -39691011 + B1F SINE Alu 3 90 -59 6 1445 330 194 76 134 chr5 112846296 112846374 -39690885 + B4 SINE B4 179 260 -32 6 1445 2383 125 16 8 chr5 112846374 112846762 -39690497 + ORR1B1 LTR MaLR 1 391 -3 6 1445 330 194 76 134 chr5 112846762 112846802 -39690457 + B4 SINE B4 261 290 -2 6 1445 290 268 49 0 chr5 112847499 112847581 -39689678 - PB1D10 SINE Alu -1 116 31 6 1445 270 147 14 29 chr5 112847597 112847667 -39689592 + CT-rich Low_complexity Low_complexity 3 71 0 6 1445 330 26 0 0 chr5 112847774 112847813 -39689446 + (TAA)n Simple_repeat Simple_repeat 1 39 0 6 1445 329 325 42 8 chr5 112847839 112847957 -39689302 - RSINE1 SINE B4 -2 163 42 6 1445 198 0 0 0 chr5 112850979 112851001 -39686258 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 6 1446 203 88 0 29 chr5 112853375 112853410 -39683849 + (CCCCCT)n Simple_repeat Simple_repeat 6 39 0 6 1446 226 225 0 0 chr5 112853912 112853952 -39683307 + polypyrimidine Low_complexity Low_complexity 4 43 0 6 1446 213 261 57 14 chr5 112854254 112854324 -39682935 + L2b LINE L2 3284 3356 -19 6 1446 432 0 0 0 chr5 112854335 112854383 -39682876 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1446 301 279 13 0 chr5 112855369 112855448 -39681811 + MTEa LTR MaLR 296 375 -4 6 1446 418 217 33 0 chr5 112855568 112855660 -39681599 - B3A SINE B2 -102 96 2 6 1446 255 338 48 27 chr5 112856007 112856153 -39681106 - MIRb SINE MIR -62 206 58 6 1446 314 222 60 24 chr5 112856879 112856962 -39680297 + MLT1A1 LTR MaLR 321 406 -2 6 1446 619 186 86 1 chr5 112856965 112857113 -39680146 + ID_B1 SINE B4 87 248 -44 6 1446 1159 50 0 0 chr5 112857118 112857259 -39680000 + B1_Mus2 SINE Alu 2 142 -5 6 1446 258 373 19 16 chr5 112857735 112857898 -39679361 + MIRb SINE MIR 15 178 -98 6 1446 198 0 0 0 chr5 112858549 112858571 -39678688 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 6 1446 731 160 0 22 chr5 112858576 112858710 -39678549 - B1_Mus2 SINE Alu -16 131 1 6 1446 290 326 145 13 chr5 112858712 112858960 -39678299 - L1M3 LINE L1 -334 5834 5552 6 1446 371 172 33 33 chr5 112859443 112859690 -39677569 + CT-rich Low_complexity Low_complexity 1 247 0 6 1446 957 264 107 15 chr5 112860163 112860490 -39676769 + ORR1E LTR MaLR 1 357 -2 6 1446 320 258 0 43 chr5 112861690 112861783 -39675476 - PB1D10 SINE Alu 0 117 29 6 1446 513 226 67 15 chr5 112862416 112862551 -39674708 - MTEa LTR MaLR -207 172 31 6 1446 275 281 64 53 chr5 112862722 112862816 -39674443 - ID_B1 SINE B4 -36 188 94 6 1446 382 175 83 34 chr5 112862737 112862825 -39674434 - PB1D10 SINE Alu -23 94 1 6 1446 218 299 78 24 chr5 112863002 112863111 -39674148 - MIRm SINE MIR -122 154 36 6 1446 360 217 0 0 chr5 112864199 112864268 -39672991 - B3A SINE B2 -72 126 58 6 1446 311 276 61 0 chr5 112864476 112864574 -39672685 - PB1D10 SINE Alu -13 104 1 6 1446 609 152 0 0 chr5 112864592 112864697 -39672562 + CT-rich Low_complexity Low_complexity 2 106 0 6 1446 303 93 0 0 chr5 112864790 112864833 -39672426 + (TG)n Simple_repeat Simple_repeat 1 43 0 6 1446 230 301 124 83 chr5 112864835 112864980 -39672279 - B4A SINE B4 -20 272 122 6 1446 21 0 0 0 chr5 112865162 112865183 -39672076 + GC_rich Low_complexity Low_complexity 1 21 0 6 1446 181 287 9 9 chr5 112866210 112866319 -39670940 + (TCTA)n Simple_repeat Simple_repeat 1 109 0 6 1446 294 313 60 17 chr5 112866445 112866562 -39670697 - RMER12 LTR ERVK -451 871 750 6 1446 321 258 0 0 chr5 112866621 112866714 -39670545 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 6 1446 250 343 73 9 chr5 112867201 112867310 -39669949 + MER102c DNA MER1_type 207 322 -9 6 1446 195 115 18 55 chr5 112868510 112868565 -39668694 + C-rich Low_complexity Low_complexity 1 53 0 6 1446 342 246 246 30 chr5 112868587 112868721 -39668538 - ID_B1 SINE B4 -16 208 46 6 1446 672 240 7 0 chr5 112868743 112868889 -39668370 - B1_Mur2 SINE Alu -2 147 1 6 1446 2228 130 45 3 chr5 112869241 112869619 -39667640 + ORR1B1 LTR MaLR 1 394 0 6 1446 209 269 32 16 chr5 112869619 112869692 -39667567 - MIRc SINE MIR -113 163 84 6 1446 5148 119 70 2 chr5 112871276 112872167 -39665092 + RMER17B LTR ERVK 1 951 -7 7 1446 628 255 42 37 chr5 112872431 112872647 -39664612 + L1_Rod LINE L1 929 1145 -6463 7 1446 2180 257 64 60 chr5 112872693 112873243 -39664016 + L1_Rod LINE L1 1213 1805 -4042 7 1446 1202 48 0 0 chr5 112873243 112873390 -39663869 + B1_Mm SINE Alu 1 147 0 7 1446 2180 257 64 60 chr5 112873390 112873701 -39663558 + L1_Rod LINE L1 1806 2077 -3770 7 1446 414 159 0 0 chr5 112873707 112873795 -39663464 + (CA)n Simple_repeat Simple_repeat 1 88 0 7 1446 801 147 0 0 chr5 112873892 112874062 -39663197 + (TC)n Simple_repeat Simple_repeat 1 170 0 7 1446 213 235 78 0 chr5 112874078 112874129 -39663130 - B1_Mus2 SINE Alu -91 56 2 7 1446 5543 248 98 63 chr5 112874131 112875864 -39661395 + L1_Rod LINE L1 2119 3991 -1856 7 1446 2137 167 40 5 chr5 112875864 112876261 -39660998 + Lx2A1 LINE L1 6595 7005 -3 7 1446 5543 248 98 63 chr5 112876261 112877001 -39660258 + L1_Rod LINE L1 3992 4679 -1168 7 1446 298 196 28 85 chr5 112877120 112877226 -39660033 - PB1D7 SINE Alu -2 118 19 7 1446 815 42 110 0 chr5 112878009 112878127 -39659132 - B1_Mm SINE Alu 0 147 17 7 1446 423 191 80 127 chr5 112878012 112878162 -39659097 - B4 SINE B4 -69 223 81 7 1446 204 40 0 0 chr5 112881184 112881209 -39656050 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 7 1446 797 228 32 46 chr5 112881776 112881992 -39655267 + MTC LTR MaLR 206 418 -3 7 1446 648 153 129 0 chr5 112882541 112882665 -39654594 - B1_Mus1 SINE Alu -6 142 3 7 1446 868 289 57 69 chr5 112883639 112883988 -39653271 - ORR1E LTR MaLR -13 346 2 7 1446 1266 266 70 19 chr5 112883988 112884404 -39652855 - MTE-int LTR MaLR -52 1528 1038 7 1446 341 336 0 23 chr5 112884568 112884696 -39652563 - MTE-int LTR MaLR -1226 354 230 7 1446 2454 111 18 98 chr5 112884696 112885145 -39652114 + MTC LTR MaLR 1 413 -8 7 1446 3566 158 160 10 chr5 112885149 112885937 -39651322 + MTC-int LTR MaLR 1 906 -352 7 1446 432 271 68 23 chr5 112885946 112886078 -39651181 - B4A SINE B4 -154 138 1 7 1446 549 212 210 32 chr5 112886926 112887174 -39650085 - B4A SINE B4 0 292 1 7 1446 295 250 10 20 chr5 112887643 112887741 -39649518 + L1MA4 LINE L1 4788 4884 -1259 7 1446 603 40 0 0 chr5 112887773 112887847 -39649412 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 7 1446 696 350 78 31 chr5 112887847 112888776 -39648483 + L1MA4 LINE L1 4873 5918 -382 7 1446 498 136 0 0 chr5 112888789 112888870 -39648389 + (TC)n Simple_repeat Simple_repeat 2 82 0 7 1446 493 273 21 35 chr5 112889594 112889738 -39647521 + RSINE1 SINE B4 4 145 -20 7 1446 270 235 0 0 chr5 112890437 112890518 -39646741 + (TG)n Simple_repeat Simple_repeat 2 82 0 7 1446 1133 102 72 0 chr5 112891251 112891418 -39645841 + B2_Mm1t SINE B2 1 179 -14 7 1446 310 98 308 43 chr5 112891465 112891582 -39645677 + B2_Mm2 SINE B2 47 194 -1 7 1446 341 253 23 0 chr5 112891610 112891697 -39645562 - L1MB7 LINE L1 -189 5995 5907 7 1446 473 250 45 0 chr5 112892168 112892280 -39644979 + B1F SINE Alu 25 141 -8 7 1446 601 142 18 0 chr5 112892328 112892441 -39644818 + CT-rich Low_complexity Low_complexity 2 116 0 7 1446 781 119 17 8 chr5 112892441 112892560 -39644699 - PB1D9 SINE Alu 0 120 1 7 1446 456 223 26 18 chr5 112892949 112893063 -39644196 + PB1D10 SINE Alu 1 115 -2 7 1446 655 320 52 0 chr5 112893081 112893275 -39643984 + ID_B1 SINE B4 1 204 -20 7 1446 422 204 10 0 chr5 112893299 112893402 -39643857 + GA-rich Low_complexity Low_complexity 4 107 0 7 1446 254 325 31 50 chr5 112894243 112894402 -39642857 + RLTR22_Mur LTR ERVK 1306 1461 -387 7 1446 254 305 0 6 chr5 112894410 112894575 -39642684 + (TG)n Simple_repeat Simple_repeat 1 164 0 7 1446 238 302 132 77 chr5 112894578 112894851 -39642408 + RMER12 LTR ERVK 778 1065 -257 7 1446 592 259 133 0 chr5 112895395 112895538 -39641721 - RSINE1 SINE B4 -1 164 3 7 1446 270 73 0 0 chr5 112895786 112895827 -39641432 + (A)n Simple_repeat Simple_repeat 1 41 0 7 1446 567 179 0 78 chr5 112896577 112896692 -39640567 - ID_B1 SINE B4 -1 223 118 7 1446 383 281 9 19 chr5 112896952 112897057 -39640202 - PB1D10 SINE Alu -11 106 3 7 1446 228 35 0 0 chr5 112897125 112897154 -39640105 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1446 752 129 0 17 chr5 112897734 112897852 -39639407 - B1_Mur2 SINE Alu -2 147 32 7 1446 286 214 68 41 chr5 112897790 112897863 -39639396 - 4.5SRNA scRNA scRNA -6 88 14 7 1446 1929 102 27 10 chr5 112897863 112898213 -39639046 - ORR1A2 LTR MaLR 0 346 11 7 1446 274 174 0 48 chr5 112898209 112898292 -39638967 - ORR1A0 LTR MaLR -249 118 44 7 1446 430 191 69 15 chr5 112898290 112898421 -39638838 - ORR1A0 LTR MaLR -253 141 5 7 1446 855 224 200 82 chr5 112898706 112898862 -39638397 + ORR1C2 LTR MaLR 4 173 -211 7 1446 920 9 0 18 chr5 112898862 112898976 -39638283 + (TCTCTG)n Simple_repeat Simple_repeat 2 113 0 7 1446 855 224 200 82 chr5 112898976 112899159 -39638100 + ORR1C2 LTR MaLR 174 382 -2 7 1446 332 304 72 28 chr5 112899460 112899762 -39637497 + L1MB5 LINE L1 5104 5419 -761 7 1446 422 351 104 4 chr5 112899917 112900166 -39637093 + L1MB5 LINE L1 5613 5886 -288 7 1446 537 190 110 62 chr5 112900425 112900571 -39636688 + URR1A DNA MER1_type 45 197 -29 7 1446 364 272 70 0 chr5 112900980 112901094 -39636165 - B4A SINE B4 -142 150 29 7 1446 212 273 14 57 chr5 112903733 112903803 -39633456 + ID2 SINE ID 6 72 -11 7 1446 510 17 0 0 chr5 112903817 112903876 -39633383 + (CA)n Simple_repeat Simple_repeat 1 59 0 7 1446 233 195 0 0 chr5 112904062 112904103 -39633156 + (TGG)n Simple_repeat Simple_repeat 3 43 0 7 1446 1134 75 0 14 chr5 112905048 112905196 -39632063 + B1_Mus1 SINE Alu 3 148 0 7 1446 289 207 11 11 chr5 112905658 112905746 -39631513 + CT-rich Low_complexity Low_complexity 3 90 0 7 1446 1185 208 13 18 chr5 112905752 112905977 -39631282 - ID_B1 SINE B4 0 224 1 7 1446 561 15 0 0 chr5 112906391 112906457 -39630802 + (GA)n Simple_repeat Simple_repeat 2 67 0 7 1446 382 209 23 0 chr5 112906458 112906630 -39630629 + (CAGA)n Simple_repeat Simple_repeat 1 176 0 7 1446 252 0 0 0 chr5 112906631 112906659 -39630600 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1446 741 23 0 0 chr5 112906659 112906746 -39630513 + (GA)n Simple_repeat Simple_repeat 2 88 0 7 1446 1438 132 98 33 chr5 112906755 112907029 -39630230 - MTC LTR MaLR -125 296 5 7 1446 637 195 13 13 chr5 112908311 112908618 -39628641 + GA-rich Low_complexity Low_complexity 1 307 0 7 1446 773 299 78 48 chr5 112909239 112909612 -39627647 + MTD LTR MaLR 22 405 -14 7 1446 379 274 207 0 chr5 112909696 112909831 -39627428 - ID_B1 SINE B4 -54 170 8 7 1446 25 0 0 0 chr5 112909887 112909912 -39627347 + AT_rich Low_complexity Low_complexity 1 25 0 7 1446 264 393 0 0 chr5 112909919 112910082 -39627177 + (TG)n Simple_repeat Simple_repeat 2 164 0 7 1446 311 292 84 39 chr5 112910099 112910302 -39626957 - L1M2 LINE L1 -640 5660 5449 7 1446 475 202 16 0 chr5 112910398 112910527 -39626732 + (TG)n Simple_repeat Simple_repeat 1 131 0 7 1446 728 163 23 0 chr5 112910539 112910711 -39626548 + (TG)n Simple_repeat Simple_repeat 1 176 0 7 1446 206 62 0 30 chr5 112911840 112911873 -39625386 + (GGA)n Simple_repeat Simple_repeat 1 32 0 7 1446 2326 157 117 14 chr5 112912269 112912774 -39624485 + RLTR31_Mm LTR ERVK 5 561 0 7 1446 1366 104 16 0 chr5 112913169 112913361 -39623898 + B2_Mm2 SINE B2 1 195 0 7 1446 1304 54 0 0 chr5 112915008 112915176 -39622083 + B2_Mm2 SINE B2 6 173 -22 7 1446 435 38 0 0 chr5 112915179 112915232 -39622027 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1446 368 384 82 4 chr5 112915857 112916113 -39621146 + MER2 DNA MER2_type 9 284 -61 7 1446 330 307 169 38 chr5 112916301 112916514 -39620745 + MER77 LTR ERVL 104 344 -263 7 1446 294 202 68 39 chr5 112916817 112916972 -39620287 - MIRb SINE MIR -46 222 105 7 1446 221 345 0 0 chr5 112917164 112917259 -39620000 - MIRm SINE MIR -104 172 72 7 1446 4764 130 153 9 chr5 112917811 112918161 -39619098 + RMER17B LTR ERVK 1 398 -560 7 1446 204 40 0 0 chr5 112918161 112918186 -39619073 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 1446 4764 130 153 9 chr5 112918186 112918673 -39618586 + RMER17B LTR ERVK 399 957 -1 7 1446 292 250 118 18 chr5 112919117 112919227 -39618032 + MER20 DNA MER1_type 54 174 -45 7 1446 802 199 23 23 chr5 112919436 112919521 -39617738 + B4 SINE B4 2 86 -206 7 1446 348 259 17 33 chr5 112919521 112919641 -39617618 + B1_Mus2 SINE Alu 1 118 -29 7 1446 259 254 39 51 chr5 112919773 112919951 -39617308 + (CA)n Simple_repeat Simple_repeat 2 177 0 7 1446 304 238 55 16 chr5 112920077 112920205 -39617054 + (CA)n Simple_repeat Simple_repeat 2 134 0 7 1446 208 241 0 36 chr5 112920205 112920261 -39616998 + GA-rich Low_complexity Low_complexity 3 56 0 7 1446 205 303 13 0 chr5 112920277 112920353 -39616906 + (ACCTG)n Simple_repeat Simple_repeat 2 78 0 7 1446 204 269 39 0 chr5 112921334 112921386 -39615873 - L2 LINE L2 -3119 300 247 7 1446 213 121 0 0 chr5 112921621 112921654 -39615605 + (TTAA)n Simple_repeat Simple_repeat 2 34 0 7 1446 419 120 33 33 chr5 112921803 112921924 -39615335 + (TCTCTG)n Simple_repeat Simple_repeat 6 126 0 7 1446 363 311 9 9 chr5 112922970 112923077 -39614182 + MER58A DNA MER1_type 13 119 -105 7 1446 360 0 0 0 chr5 112923196 112923236 -39614023 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 7 1446 1153 56 7 0 chr5 112923241 112923384 -39613875 + B1_Mus2 SINE Alu 1 144 -3 7 1446 315 0 0 0 chr5 112923384 112923419 -39613840 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 7 1446 275 265 37 84 chr5 112923474 112923581 -39613678 - MIRc SINE MIR -85 183 82 7 1446 576 284 156 62 chr5 112924868 112925285 -39611974 - RMER5 LTR ERV1 -4 530 75 7 1446 668 257 153 17 chr5 112925675 112925736 -39611523 - B4 SINE B4 -18 274 206 7 1446 504 48 0 0 chr5 112925736 112925799 -39611460 + (TC)n Simple_repeat Simple_repeat 2 64 0 7 1446 668 257 153 17 chr5 112925799 112925978 -39611281 - B4 SINE B4 -87 205 1 7 1446 319 162 25 0 chr5 112926769 112926849 -39610410 + (TCCA)n Simple_repeat Simple_repeat 1 82 0 7 1446 474 18 0 0 chr5 112926850 112926905 -39610354 + (TATG)n Simple_repeat Simple_repeat 3 57 0 7 1446 346 280 0 61 chr5 112927088 112927202 -39610057 + MLT1A1 LTR MaLR 294 400 -8 7 1446 507 177 0 0 chr5 112927337 112927433 -39609826 + (TGGA)n Simple_repeat Simple_repeat 3 98 0 8 1446 210 118 0 0 chr5 112927441 112927475 -39609784 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 8 1446 230 240 39 26 chr5 112927510 112927587 -39609672 + ORR1E LTR MaLR 2 79 -280 8 1446 454 306 87 5 chr5 112927767 112927951 -39609308 + ORR1E LTR MaLR 52 250 -109 8 1446 307 279 78 52 chr5 112928697 112928884 -39608375 + B3A SINE B2 20 211 -5 8 1446 192 40 0 0 chr5 112929778 112929803 -39607456 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 8 1446 602 160 8 0 chr5 112929913 112930044 -39607215 + (CA)n Simple_repeat Simple_repeat 1 132 0 8 1446 252 273 0 0 chr5 112930103 112930224 -39607035 + (CA)n Simple_repeat Simple_repeat 2 122 0 8 1446 269 146 18 35 chr5 112930266 112930323 -39606936 - L1M1 LINE L1 -418 5882 5827 8 1446 210 71 0 0 chr5 112931106 112931134 -39606125 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1446 1142 93 0 6 chr5 112931221 112931383 -39605876 + B2_Mm2 SINE B2 2 162 -33 8 1446 294 29 0 0 chr5 112931383 112931418 -39605841 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1446 503 291 0 0 chr5 112931572 112931689 -39605570 + B4 SINE B4 174 290 -2 8 1446 313 366 8 22 chr5 112931689 112931823 -39605436 + B4A SINE B4 152 283 -9 8 1446 421 232 30 6 chr5 112931962 112932307 -39604952 + (TG)n Simple_repeat Simple_repeat 1 353 0 8 1446 856 137 4 13 chr5 112933142 112933379 -39603880 + (TTAGGG)n Simple_repeat Simple_repeat 1 234 0 8 1446 457 304 0 9 chr5 112933768 112933884 -39603375 + PB1D10 SINE Alu 1 115 -2 8 1446 1390 71 31 37 chr5 112934121 112934312 -39602947 + B2_Mm2 SINE B2 3 192 -3 8 1446 725 249 49 16 chr5 112935384 112935568 -39601691 + B3A SINE B2 1 190 -8 8 1446 245 267 9 0 chr5 112935881 112935997 -39601262 + (CA)n Simple_repeat Simple_repeat 1 117 0 8 1446 219 36 0 0 chr5 112937649 112937677 -39599582 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1446 408 267 76 35 chr5 112937827 112937998 -39599261 - B4A SINE B4 -48 244 67 8 1446 459 0 0 0 chr5 112938704 112938755 -39598504 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1446 358 274 113 0 chr5 112939779 112939873 -39597386 + B4A SINE B4 124 229 -63 8 1446 464 267 70 56 chr5 112939873 112940016 -39597243 + RSINE1 SINE B4 2 146 -19 8 1446 278 269 0 33 chr5 112940113 112940294 -39596965 + (CATA)n Simple_repeat Simple_repeat 4 178 0 8 1446 258 211 0 0 chr5 112940303 112940407 -39596852 + GA-rich Low_complexity Low_complexity 2 105 0 8 1446 2992 255 115 24 chr5 112940599 112941575 -39595684 - Lx7 LINE L1 -987 6709 5645 8 1446 1223 207 10 214 chr5 112941575 112941817 -39595442 + Lx7 LINE L1 6697 6846 -850 8 1446 1299 79 0 0 chr5 112941817 112941994 -39595265 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 8 1446 1223 207 10 214 chr5 112941994 112942236 -39595023 + Lx7 LINE L1 6847 7082 -614 8 1446 26 0 0 0 chr5 112942796 112942822 -39594437 + AT_rich Low_complexity Low_complexity 1 26 0 8 1446 308 305 0 0 chr5 112943243 112943325 -39593934 - ID4_ SINE ID 0 83 2 8 1446 984 165 199 0 chr5 112943366 112943542 -39593717 - B3 SINE B2 -4 212 2 8 1446 840 235 114 25 chr5 112943632 112943868 -39593391 + B4A SINE B4 1 257 -35 8 1446 453 110 0 0 chr5 112943889 112943962 -39593297 + (CA)n Simple_repeat Simple_repeat 2 74 0 8 1446 354 307 0 5 chr5 112944054 112944278 -39592981 + (CA)n Simple_repeat Simple_repeat 1 222 0 8 1446 338 107 0 18 chr5 112944315 112944372 -39592887 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1446 816 261 56 5 chr5 112944487 112944683 -39592576 + MTE2b LTR MaLR 1 206 -173 8 1446 692 230 132 50 chr5 112944762 112944982 -39592277 + ORR1E LTR MaLR 122 359 0 8 1446 285 194 81 0 chr5 112944987 112945049 -39592210 + MTE2b LTR MaLR 294 360 -19 8 1446 2088 152 64 44 chr5 112945132 112945537 -39591722 + MTC LTR MaLR 1 413 -8 8 1446 1578 201 93 11 chr5 112946140 112946507 -39590752 - MTD LTR MaLR -16 403 7 8 1446 242 362 14 118 chr5 112946852 112946996 -39590263 + MER20 DNA MER1_type 16 144 -75 8 1446 1165 187 27 18 chr5 112946998 112947221 -39590038 - URR1A DNA MER1_type -1 225 1 8 1446 342 262 52 67 chr5 112947613 112947748 -39589511 - L1M5 LINE L1 -2944 3202 3070 8 1446 192 350 41 0 chr5 112949421 112949518 -39587741 - MIRb SINE MIR -113 155 55 8 1446 335 328 11 22 chr5 112949603 112949781 -39587478 + GA-rich Low_complexity Low_complexity 2 177 0 8 1446 213 373 56 0 chr5 112950936 112951062 -39586197 + L2a LINE L2 3284 3416 -10 8 1446 360 0 0 0 chr5 112951609 112951649 -39585610 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1446 741 191 33 72 chr5 112951752 112951904 -39585355 - B3 SINE B2 -49 146 1 8 1446 363 191 11 35 chr5 112952018 112952105 -39585154 + PB1D10 SINE Alu 26 110 -7 8 1446 506 173 9 52 chr5 112952888 112953004 -39584255 + ORR1A2 LTR MaLR 1 111 -235 8 1446 1788 126 57 29 chr5 112952981 112953338 -39583921 + ORR1A2 LTR MaLR 28 356 -14 8 1446 617 224 6 0 chr5 112955323 112955484 -39581775 + G-rich Low_complexity Low_complexity 4 165 0 8 1446 675 136 0 0 chr5 112956369 112956479 -39580780 + (TCCC)n Simple_repeat Simple_repeat 4 113 0 8 1446 492 32 0 0 chr5 112957161 112957223 -39580036 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1446 570 29 0 0 chr5 112957461 112957529 -39579730 + (TC)n Simple_repeat Simple_repeat 1 68 0 8 1446 231 154 30 15 chr5 112957529 112957595 -39579664 + (CA)n Simple_repeat Simple_repeat 2 68 0 8 1446 237 130 14 42 chr5 112957602 112957674 -39579585 + (CAGAGA)n Simple_repeat Simple_repeat 2 71 0 8 1446 202 250 93 37 chr5 112958497 112958605 -39578654 - MIRb SINE MIR -82 186 73 8 1446 223 309 41 10 chr5 112958807 112958905 -39578354 + L2a LINE L2 3324 3424 -2 8 1446 333 219 214 20 chr5 112961011 112961109 -39576150 + PB1D10 SINE Alu 1 117 0 8 1446 932 189 81 5 chr5 112961325 112961522 -39575737 - B3 SINE B2 -3 213 2 8 1446 409 272 42 53 chr5 112961999 112962227 -39575032 - MIRb SINE MIR 0 262 34 8 1446 544 225 34 74 chr5 112963311 112963460 -39573799 + B3A SINE B2 1 143 -55 8 1446 300 91 0 0 chr5 112963506 112963550 -39573709 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1446 241 311 33 0 chr5 112965427 112965517 -39571742 + CT-rich Low_complexity Low_complexity 1 93 0 8 1446 300 296 76 45 chr5 112965576 112965774 -39571485 - Tigger5 DNA MER2_type -104 2302 2099 8 1446 406 319 88 44 chr5 112965965 112966214 -39571045 + MLT1J2 LTR MaLR 1 260 -188 8 1446 483 177 0 0 chr5 112966637 112966767 -39570492 + CT-rich Low_complexity Low_complexity 1 130 0 8 1446 287 25 0 24 chr5 112967251 112967292 -39569967 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 8 1446 760 303 42 18 chr5 112967296 112967626 -39569633 + L1MEb LINE L1 281 626 -5468 8 1446 663 261 138 4 chr5 112967683 112967914 -39569345 + B4A SINE B4 29 290 -2 8 1446 318 343 0 0 chr5 112967938 112968037 -39569222 + (CA)n Simple_repeat Simple_repeat 2 100 0 8 1446 320 256 17 6 chr5 112968086 112968259 -39569000 + (CA)n Simple_repeat Simple_repeat 2 176 0 8 1446 238 284 8 52 chr5 112968962 112969024 -39568235 + L1MEb LINE L1 1381 1439 -4761 8 1446 186 71 0 0 chr5 112969024 112969052 -39568207 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1446 238 284 8 52 chr5 112969052 112969123 -39568136 + L1MEb LINE L1 1440 1508 -4692 8 1446 478 0 32 0 chr5 112969276 112969338 -39567921 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 8 1446 621 269 134 5 chr5 112969340 112969534 -39567725 - ID_B1 SINE B4 -4 220 2 8 1446 365 312 88 0 chr5 112969578 112969703 -39567556 + RSINE1 SINE B4 30 165 0 8 1446 452 175 8 0 chr5 112969703 112969829 -39567430 + (CA)n Simple_repeat Simple_repeat 1 127 0 8 1446 880 252 15 0 chr5 112969881 112970079 -39567180 - B3 SINE B2 -14 202 2 8 1446 964 144 0 22 chr5 112970088 112970272 -39566987 + GA-rich Low_complexity Low_complexity 1 180 0 8 1446 498 192 33 0 chr5 112970272 112970290 -39566969 + polypurine Low_complexity Low_complexity 1 18 0 8 1446 1270 61 0 16 chr5 112970290 112970473 -39566786 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 8 1446 498 192 33 0 chr5 112970473 112970605 -39566654 + GA-rich Low_complexity Low_complexity 19 155 0 8 1446 324 235 0 0 chr5 112970697 112970765 -39566494 + L1MEb LINE L1 1838 1905 -4295 8 1446 585 42 0 0 chr5 112970828 112970900 -39566359 + (TTA)n Simple_repeat Simple_repeat 3 74 0 8 1446 313 278 24 87 chr5 112970900 112971026 -39566233 - RSINE1 SINE B4 -1 164 47 8 1446 218 136 0 22 chr5 112971083 112971128 -39566131 + GA-rich Low_complexity Low_complexity 2 45 0 8 1446 553 133 9 9 chr5 112972265 112972285 -39564974 + polypyrimidine Low_complexity Low_complexity 89 108 0 8 1446 1368 67 0 0 chr5 112972285 112972465 -39564794 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 8 1446 553 133 9 9 chr5 112972465 112972550 -39564709 + polypyrimidine Low_complexity Low_complexity 4 88 0 8 1446 865 246 54 10 chr5 112972560 112972765 -39564494 - B3 SINE B2 -2 214 1 8 1446 438 321 59 55 chr5 112972932 112973169 -39564090 - B4 SINE B4 -8 284 47 8 1446 317 278 161 21 chr5 112973371 112973576 -39563683 + MIRb SINE MIR 21 245 -17 8 1446 1319 61 50 0 chr5 112973593 112973774 -39563485 - B2_Mm2 SINE B2 -5 190 1 8 1446 375 321 52 7 chr5 112974003 112974138 -39563121 + RSINE1 SINE B4 1 141 -24 8 1446 513 211 0 0 chr5 112974146 112974269 -39562990 + (ATG)n Simple_repeat Simple_repeat 3 125 0 8 1446 3038 46 18 5 chr5 112974532 112974923 -39562336 + MTB LTR MaLR 5 400 0 8 1446 926 93 0 6 chr5 112975072 112975234 -39562025 + (CA)n Simple_repeat Simple_repeat 2 162 0 8 1446 210 37 0 0 chr5 112976371 112976398 -39560861 + (TC)n Simple_repeat Simple_repeat 2 28 0 8 1446 321 47 0 0 chr5 112976398 112976440 -39560819 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1446 237 176 143 29 chr5 112976440 112976510 -39560749 - B4 SINE B4 -27 265 188 8 1446 201 250 0 0 chr5 112976822 112976898 -39560361 + (CA)n Simple_repeat Simple_repeat 1 76 0 8 1446 356 224 43 43 chr5 112977222 112977385 -39559874 + (CA)n Simple_repeat Simple_repeat 2 164 0 8 1446 323 323 8 0 chr5 112977503 112977630 -39559629 + (CA)n Simple_repeat Simple_repeat 1 128 0 8 1446 431 272 0 0 chr5 112978507 112978610 -39558649 - B4A SINE B4 -78 214 112 8 1446 181 284 149 0 chr5 112979603 112979670 -39557589 + MIR SINE MIR 19 95 -167 8 1446 430 303 213 40 chr5 112979963 112980259 -39557000 + MLT1A1 LTR MaLR 1 390 -18 8 1446 514 209 26 9 chr5 112981670 112981786 -39555473 + PB1D7 SINE Alu 3 120 0 9 1446 310 284 45 0 chr5 112981909 112981997 -39555262 - PB1D10 SINE Alu -1 116 25 9 1446 328 136 33 22 chr5 112982653 112982743 -39554516 + (CA)n Simple_repeat Simple_repeat 2 92 0 9 1446 531 114 21 59 chr5 112982766 112982952 -39554307 + (CA)n Simple_repeat Simple_repeat 1 179 0 9 1446 315 112 45 36 chr5 112982969 112983080 -39554179 + (CA)n Simple_repeat Simple_repeat 2 113 0 9 1446 316 351 58 26 chr5 112983160 112983350 -39553909 - MIRb SINE MIR -31 237 42 9 1446 294 222 233 0 chr5 112983866 112983956 -39553303 - B1F SINE Alu -2 147 37 9 1447 268 318 179 0 chr5 112984610 112984761 -39552498 - B4 SINE B4 -12 280 103 9 1447 355 211 25 92 chr5 112984840 112984960 -39552299 - PB1D10 SINE Alu 0 117 6 9 1447 582 212 0 0 chr5 112985012 112985172 -39552087 + (CA)n Simple_repeat Simple_repeat 2 161 0 9 1447 180 125 0 0 chr5 112985185 112985217 -39552042 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1447 384 284 0 0 chr5 112985236 112985470 -39551789 + (CA)n Simple_repeat Simple_repeat 1 234 0 9 1447 986 294 86 57 chr5 112985885 112986376 -39550883 + ORSL-2b DNA Tip100 1 505 -3 9 1447 383 285 48 16 chr5 112986532 112986657 -39550602 + RSINE1 SINE B4 8 136 -29 9 1447 2464 74 3 0 chr5 112986891 112987216 -39550043 + ORR1A2 LTR MaLR 2 327 0 9 1447 242 341 30 6 chr5 112987239 112987404 -39549855 + (TGGA)n Simple_repeat Simple_repeat 4 172 0 9 1447 228 214 30 110 chr5 112987456 112987556 -39549703 + RLTR23 LTR ERV1 142 233 -197 9 1447 187 392 8 31 chr5 112988099 112988228 -39549031 - MIRb SINE MIR -89 179 54 9 1447 286 262 62 53 chr5 112988534 112988647 -39548612 - B4 SINE B4 0 292 179 9 1447 211 270 143 48 chr5 112988631 112988675 -39548584 - B3A SINE B2 -81 117 3 9 1447 266 279 0 0 chr5 112988675 112988736 -39548523 - B4A SINE B4 -229 63 3 9 1447 478 288 38 0 chr5 112988811 112988943 -39548316 + B1F SINE Alu 1 137 -12 9 1447 296 260 114 64 chr5 112990019 112990159 -39547100 + MLT1G1 LTR MaLR 401 547 -32 9 1447 194 235 59 0 chr5 112990213 112990264 -39546995 - L2c LINE L2 -229 3158 3105 9 1447 940 315 45 36 chr5 112991145 112991501 -39545758 - ORR1E LTR MaLR 0 359 1 9 1447 300 93 0 0 chr5 112991610 112991653 -39545606 - HAL1-3A_ME LINE L1 -840 2018 1976 9 1447 357 294 0 0 chr5 112991678 112991838 -39545421 + (TG)n Simple_repeat Simple_repeat 1 160 0 9 1447 252 241 0 0 chr5 112991865 112991944 -39545315 + (TG)n Simple_repeat Simple_repeat 1 79 0 9 1447 536 278 138 19 chr5 112991950 112992210 -39545049 - B4A SINE B4 0 292 2 9 1447 995 292 14 18 chr5 112992829 112993115 -39544144 + B4A SINE B4 8 292 0 9 1447 199 274 55 0 chr5 112993262 112993335 -39543924 - MIR3 SINE MIR -50 158 82 9 1447 235 325 35 9 chr5 112993730 112993845 -39543414 + G-rich Low_complexity Low_complexity 4 121 0 9 1447 195 143 0 0 chr5 112994014 112994049 -39543210 + MIRc SINE MIR 113 147 -121 9 1447 708 100 52 23 chr5 112995401 112995575 -39541684 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 9 1447 325 116 29 0 chr5 112996608 112996677 -39540582 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 9 1447 825 139 29 6 chr5 112997266 112997618 -39539641 + (TCCA)n Simple_repeat Simple_repeat 1 360 0 9 1447 239 198 67 90 chr5 112998594 112998683 -39538576 - MIRc SINE MIR -51 217 131 9 1447 250 351 0 0 chr5 112999414 112999491 -39537768 + MIRb SINE MIR 24 100 -168 9 1447 2172 162 47 20 chr5 112999492 112999894 -39537365 - MTC LTR MaLR -8 413 1 9 1447 181 296 0 36 chr5 112999894 112999950 -39537309 + MIRc SINE MIR 91 144 -124 9 1447 261 145 12 62 chr5 113000318 113000399 -39536860 + (CACAA)n Simple_repeat Simple_repeat 4 80 0 1 1447 261 0 0 0 chr5 113000401 113000430 -39536829 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1447 360 0 0 0 chr5 113000431 113000471 -39536788 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1447 232 262 66 0 chr5 113000479 113000540 -39536719 - B1F SINE Alu -83 66 2 4 1447 231 272 133 19 chr5 113000656 113000761 -39536498 + MIRb SINE MIR 42 158 -110 5 1447 2052 133 8 7 chr5 113001150 113001555 -39535704 - ORR1A2 LTR MaLR -1 366 1 6 1447 357 24 0 0 chr5 113002139 113002181 -39535078 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 7 1447 324 0 0 0 chr5 113004262 113004298 -39532961 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1447 194 135 0 37 chr5 113006264 113006318 -39530941 + (CGAG)n Simple_repeat Simple_repeat 1 52 0 9 1447 233 333 26 0 chr5 113007963 113008041 -39529218 - MIR SINE MIR -107 155 76 1 1447 1080 141 9 6 chr5 113008633 113008967 -39528292 + (TCCA)n Simple_repeat Simple_repeat 1 335 0 1 1447 213 94 0 0 chr5 113008965 113008997 -39528262 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1447 443 290 11 28 chr5 113009003 113009184 -39528075 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 1 1447 453 122 0 0 chr5 113009386 113009460 -39527799 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 1 1447 320 268 72 0 chr5 113011634 113011731 -39525528 - PB1D9 SINE Alu -10 110 7 1 1447 2376 118 86 21 chr5 113013649 113014031 -39523228 + MTB_Mm LTR MaLR 1 407 0 1 1447 439 282 113 48 chr5 113014141 113014327 -39522932 - B3A SINE B2 -13 203 6 1 1447 459 301 142 9 chr5 113014896 113015121 -39522138 - MT2A LTR ERVL -22 511 257 1 1447 222 150 0 0 chr5 113016250 113016290 -39520969 + (TTG)n Simple_repeat Simple_repeat 3 42 0 1 1447 200 188 42 0 chr5 113016395 113016443 -39520816 + (TTA)n Simple_repeat Simple_repeat 3 52 0 2 1447 208 188 15 15 chr5 113016478 113016543 -39520716 + (TTA)n Simple_repeat Simple_repeat 1 65 0 2 1447 183 129 0 0 chr5 113016584 113016615 -39520644 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2 1447 366 91 0 0 chr5 113016615 113016670 -39520589 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 2 1447 1031 70 7 0 chr5 113016778 113016920 -39520339 - B1_Mus1 SINE Alu 0 148 6 2 1447 485 299 52 79 chr5 113016780 113017009 -39520250 - B4 SINE B4 -69 223 1 2 1447 180 0 0 0 chr5 113017584 113017604 -39519655 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1447 185 231 77 0 chr5 113017743 113017795 -39519464 - L2b LINE L2 -14 3361 3306 2 1447 250 140 0 50 chr5 113018115 113018175 -39519084 + CT-rich Low_complexity Low_complexity 1 57 0 2 1447 322 292 59 53 chr5 113018179 113018331 -39518928 - HAL1-3A_ME LINE L1 -421 2437 2285 2 1447 219 216 0 0 chr5 113018331 113018368 -39518891 + C-rich Low_complexity Low_complexity 2 38 0 2 1447 234 0 0 0 chr5 113019393 113019419 -39517840 + (TGGGGG)n Simple_repeat Simple_repeat 4 29 0 2 1447 209 212 140 86 chr5 113019525 113019618 -39517641 - MIRc SINE MIR -64 212 112 3 1447 225 0 0 0 chr5 113020023 113020048 -39517211 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1447 201 74 0 0 chr5 113020195 113020222 -39517037 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 1447 1984 112 11 28 chr5 113020581 113021037 -39516222 - ORR1A2 LTR MaLR -12 382 1 3 1447 240 243 0 0 chr5 113021476 113021550 -39515709 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1447 522 251 0 0 chr5 113021566 113021729 -39515530 + (TG)n Simple_repeat Simple_repeat 2 164 0 3 1447 343 284 81 71 chr5 113022091 113022288 -39514971 - L1MD LINE L1 -2876 3270 3072 3 1447 234 167 20 59 chr5 113022293 113022395 -39514864 + CT-rich Low_complexity Low_complexity 4 101 0 3 1447 974 345 23 2 chr5 113022576 113023015 -39514244 - L1M5 LINE L1 -3314 2832 2385 3 1447 467 266 57 6 chr5 113023103 113023262 -39513997 - HAL1-2a_MD LINE L1 -515 2509 2343 3 1447 2208 148 14 31 chr5 113023263 113023680 -39513579 - RMER17C LTR ERVK 0 410 1 3 1447 417 308 56 7 chr5 113023783 113023927 -39513332 + ORR1E LTR MaLR 11 161 -198 4 1447 262 328 43 51 chr5 113024836 113024974 -39512285 + Charlie18a DNA MER1_type 4 140 -202 4 1447 565 125 16 8 chr5 113025099 113025228 -39512031 + (TCTG)n Simple_repeat Simple_repeat 3 132 0 4 1447 705 220 0 4 chr5 113025250 113025521 -39511738 + (TCTG)n Simple_repeat Simple_repeat 1 269 0 4 1447 200 146 49 0 chr5 113025534 113025575 -39511684 + CT-rich Low_complexity Low_complexity 2 44 0 4 1447 466 91 0 25 chr5 113025593 113025672 -39511587 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 1447 931 181 69 32 chr5 113026181 113026214 -39511045 + B3 SINE B2 4 36 -180 4 1447 369 0 0 0 chr5 113026214 113026255 -39511004 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1447 931 181 69 32 chr5 113026255 113026409 -39510850 + B3 SINE B2 37 198 -18 4 1447 226 333 60 0 chr5 113026459 113026543 -39510716 + B1F2 SINE Alu 22 110 -39 4 1447 405 0 0 0 chr5 113026642 113026687 -39510572 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 4 1447 915 250 18 13 chr5 113027430 113027657 -39509602 + B4 SINE B4 2 229 -63 4 1447 337 313 51 102 chr5 113027627 113027658 -39509601 + B4 SINE B4 70 130 -162 5 1447 425 241 26 26 chr5 113027658 113027773 -39509486 + PB1D9 SINE Alu 3 117 -3 5 1447 337 313 51 102 chr5 113027773 113027840 -39509419 + B4 SINE B4 131 267 -25 5 1447 297 0 0 0 chr5 113027840 113027873 -39509386 + (TC)n Simple_repeat Simple_repeat 1 33 0 5 1447 337 313 51 102 chr5 113027873 113027894 -39509365 + B4 SINE B4 268 291 -1 5 1447 368 286 10 0 chr5 113027895 113027993 -39509266 + (CA)n Simple_repeat Simple_repeat 2 100 0 5 1447 535 233 6 6 chr5 113028004 113028181 -39509078 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 1447 282 238 8 31 chr5 113028234 113028364 -39508895 + (CATA)n Simple_repeat Simple_repeat 1 127 0 5 1447 567 215 17 0 chr5 113028400 113028577 -39508682 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1447 332 241 14 21 chr5 113030082 113030226 -39507033 + CT-rich Low_complexity Low_complexity 2 144 0 5 1447 353 313 34 0 chr5 113030378 113030525 -39506734 - L1MA5 LINE L1 -126 6174 6023 5 1447 326 269 40 23 chr5 113030608 113030783 -39506476 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1447 422 369 0 0 chr5 113030982 113031158 -39506101 + (TG)n Simple_repeat Simple_repeat 1 176 0 5 1447 358 384 79 0 chr5 113031181 113031358 -39505901 - B4 SINE B4 0 292 102 6 1447 1668 218 109 41 chr5 113031362 113031875 -39505384 + RLTR20B1 LTR ERVK 1 548 -15 6 1447 531 0 0 0 chr5 113032116 113032175 -39505084 + (TTCA)n Simple_repeat Simple_repeat 2 60 0 6 1447 427 107 13 13 chr5 113032992 113033068 -39504191 + (GGGA)n Simple_repeat Simple_repeat 1 76 0 6 1447 277 254 23 170 chr5 113033138 113033309 -39503950 - RLTR14 LTR ERV1 -2 380 235 6 1447 338 284 58 92 chr5 113033843 113033963 -39503296 + PB1D10 SINE Alu 2 117 0 6 1447 216 185 0 0 chr5 113035259 113035313 -39501946 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1447 381 249 11 6 chr5 113035359 113035537 -39501722 + (TG)n Simple_repeat Simple_repeat 1 179 0 6 1447 361 274 0 9 chr5 113035886 113035993 -39501266 - HAL1-2a_MD LINE L1 -563 2461 2356 6 1447 446 282 11 33 chr5 113036018 113036201 -39501058 - HAL1-2a_MD LINE L1 -519 2505 2327 6 1447 305 359 22 45 chr5 113037395 113037529 -39499730 + MIRb SINE MIR 58 188 -80 6 1447 541 287 156 25 chr5 113037534 113037777 -39499482 + B4A SINE B4 2 276 -16 7 1447 628 191 6 6 chr5 113038221 113038400 -39498859 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1447 685 146 13 21 chr5 113038413 113038655 -39498604 + (TG)n Simple_repeat Simple_repeat 1 239 0 7 1447 633 166 0 17 chr5 113038668 113038840 -39498419 + (TG)n Simple_repeat Simple_repeat 2 170 0 7 1447 531 284 44 80 chr5 113038866 113039115 -39498144 - B4A SINE B4 0 292 53 7 1447 776 235 0 20 chr5 113039323 113039475 -39497784 + B1_Mur1 SINE Alu 1 149 0 7 1447 216 121 29 43 chr5 113039475 113039544 -39497715 + A-rich Low_complexity Low_complexity 3 70 0 7 1447 726 205 193 0 chr5 113039721 113039892 -39497367 - B3 SINE B2 -11 205 2 7 1447 4490 151 41 19 chr5 113039976 113040800 -39496459 - RMER13A LTR ERVK -18 842 1 7 1447 636 245 126 72 chr5 113041309 113041363 -39495896 - B4A SINE B4 0 292 247 7 1447 207 0 0 0 chr5 113041363 113041386 -39495873 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1447 636 245 126 72 chr5 113041386 113041608 -39495651 - B4A SINE B4 -46 246 1 7 1447 768 230 0 0 chr5 113041615 113041763 -39495496 - B1_Mur2 SINE Alu -1 148 1 7 1447 279 317 41 36 chr5 113041901 113042097 -39495162 - L1MD LINE L1 -809 5550 5354 8 1447 701 228 34 0 chr5 113042650 113042799 -39494460 + MTEa LTR MaLR 11 164 -215 8 1447 1035 25 0 0 chr5 113042826 113042948 -39494311 + (TCCCC)n Simple_repeat Simple_repeat 4 125 0 8 1447 2360 121 12 62 chr5 113042958 113043380 -39493879 + MTC LTR MaLR 13 413 -8 8 1447 229 259 0 0 chr5 113043560 113043618 -39493641 + (ATGGTG)n Simple_repeat Simple_repeat 3 60 0 8 1447 362 339 35 46 chr5 113043688 113043861 -39493398 + MER5A DNA MER1_type 1 171 -18 8 1447 351 268 80 44 chr5 113043914 113044059 -39493200 - MIR SINE MIR -101 167 16 8 1447 861 158 6 11 chr5 113044815 113044994 -39492265 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 8 1447 539 226 26 0 chr5 113045025 113045259 -39492000 + (TCCA)n Simple_repeat Simple_repeat 1 240 0 8 1447 240 35 0 0 chr5 113045314 113045343 -39491916 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1447 457 242 202 32 chr5 113045372 113045560 -39491699 + MLT2D LTR ERVL 67 286 -128 8 1447 456 335 47 26 chr5 113045597 113045787 -39491472 + Tigger7 DNA MER2_type 7 200 -2291 9 1447 313 288 68 61 chr5 113046353 113046501 -39490758 - ID_B1 SINE B4 -75 149 1 9 1447 411 21 0 0 chr5 113047542 113047590 -39489669 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1447 500 237 68 0 chr5 113047625 113047743 -39489516 + B1F2 SINE Alu 24 149 0 9 1447 2198 102 6 103 chr5 113048257 113048617 -39488642 - ORR1A2 LTR MaLR -2 325 1 9 1447 864 254 176 15 chr5 113048719 113049043 -39488216 + MTEa LTR MaLR 4 379 0 9 1447 282 56 0 0 chr5 113049285 113049321 -39487938 + (CAAT)n Simple_repeat Simple_repeat 1 36 0 9 1447 229 243 13 51 chr5 113049406 113049484 -39487775 + ORR1A0 LTR MaLR 9 83 -263 9 1447 429 224 13 0 chr5 113049494 113049570 -39487689 - Lx5 LINE L1 -142 6908 6832 9 1447 679 288 88 0 chr5 113049570 113049775 -39487484 - ID_B1 SINE B4 -1 223 1 9 1447 230 325 102 8 chr5 113050130 113050248 -39487011 - MLT1G3 LTR MaLR -18 577 449 1 1447 271 224 15 15 chr5 113050418 113050486 -39486773 + GA-rich Low_complexity Low_complexity 2 69 0 1 1447 276 30 0 0 chr5 113050496 113050529 -39486730 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1447 685 264 145 46 chr5 113052531 113052793 -39484466 - MTE2a LTR MaLR -29 350 63 1 1447 201 291 0 0 chr5 113052793 113052879 -39484380 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1447 547 235 6 16 chr5 113052911 113053093 -39484166 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1447 216 163 0 0 chr5 113053113 113053156 -39484103 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1447 396 0 0 0 chr5 113053158 113053202 -39484057 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1447 458 333 95 39 chr5 113053734 113053965 -39483294 + B4 SINE B4 49 292 0 1 1447 235 264 14 0 chr5 113053973 113054113 -39483146 + (CA)n Simple_repeat Simple_repeat 1 142 0 1 1447 545 228 0 6 chr5 113054126 113054294 -39482965 + (CA)n Simple_repeat Simple_repeat 2 168 0 1 1447 240 200 0 0 chr5 113055199 113055254 -39482005 + (CACCAT)n Simple_repeat Simple_repeat 2 56 0 1 1447 1146 67 0 0 chr5 113055510 113055675 -39481584 + (CA)n Simple_repeat Simple_repeat 1 165 0 1 1447 246 235 0 0 chr5 113055915 113055966 -39481293 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1447 270 247 14 7 chr5 113055987 113056134 -39481125 + (TG)n Simple_repeat Simple_repeat 1 148 0 1 1447 234 217 0 0 chr5 113056172 113056241 -39481018 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1447 258 350 0 0 chr5 113056256 113056356 -39480903 + (TG)n Simple_repeat Simple_repeat 1 100 0 1 1447 215 237 90 26 chr5 113056825 113056903 -39480356 + B1F SINE Alu 19 101 -48 1 1447 252 324 26 43 chr5 113056940 113057056 -39480203 + MIRc SINE MIR 35 152 -116 1 1447 220 226 118 12 chr5 113057208 113057293 -39479966 - MIRb SINE MIR -141 127 34 1 1447 423 255 29 10 chr5 113057658 113057761 -39479498 + G-rich Low_complexity Low_complexity 2 106 0 1 1447 484 174 29 29 chr5 113057766 113057938 -39479321 + GA-rich Low_complexity Low_complexity 3 174 0 1 1447 324 0 0 0 chr5 113058814 113058850 -39478409 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1447 1347 153 14 0 chr5 113059249 113059471 -39477788 - URR1B DNA MER1_type 0 225 1 1 1447 655 133 97 0 chr5 113059702 113059815 -39477444 + MTC LTR MaLR 1 124 -297 1 1447 22 0 0 0 chr5 113059833 113059855 -39477404 + AT_rich Low_complexity Low_complexity 1 22 0 1 1447 1873 96 3 11 chr5 113059897 113060180 -39477079 + MTC LTR MaLR 134 414 -7 1 1447 1023 265 67 75 chr5 113060309 113060684 -39476575 + MTE2a LTR MaLR 8 379 0 1 1447 251 317 58 0 chr5 113061082 113061202 -39476057 + B4A SINE B4 1 127 -165 1 1447 445 199 13 20 chr5 113061266 113061415 -39475844 + (CA)n Simple_repeat Simple_repeat 2 149 0 1 1447 305 242 78 39 chr5 113061701 113061804 -39475455 - RLTR23 LTR ERV1 0 430 324 1 1447 1608 182 209 29 chr5 113061893 113062271 -39474988 - RLTR41 LTR ERV1 0 446 1 1 1447 197 167 28 0 chr5 113062653 113062689 -39474570 + MIRc SINE MIR 116 152 -116 1 1447 898 256 36 22 chr5 113062774 113063050 -39474209 + B4A SINE B4 5 284 -8 1 1447 240 337 0 21 chr5 113063059 113063156 -39474103 + (CATA)n Simple_repeat Simple_repeat 2 96 0 1 1447 378 283 0 0 chr5 113063166 113063325 -39473934 + (CA)n Simple_repeat Simple_repeat 1 159 0 1 1447 312 303 0 0 chr5 113063357 113063535 -39473724 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1447 255 61 0 0 chr5 113063543 113063576 -39473683 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1 1447 1483 188 56 3 chr5 113063812 113064117 -39473142 + MTD LTR MaLR 42 362 -57 1 1447 1003 266 103 26 chr5 113064148 113064537 -39472722 + MTD LTR MaLR 1 419 0 1 1447 387 0 0 0 chr5 113065263 113065306 -39471953 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1447 243 0 0 0 chr5 113065404 113065431 -39471828 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1447 243 250 0 0 chr5 113065718 113065802 -39471457 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1447 469 168 19 0 chr5 113065801 113065908 -39471351 + (TGGA)n Simple_repeat Simple_repeat 3 111 0 1 1447 1440 225 74 20 chr5 113066794 113067198 -39470061 + RLTR11A2 LTR ERVK 2 427 -100 1 1447 382 233 184 82 chr5 113067197 113067235 -39470024 - B4 SINE B4 -48 244 214 1 1447 487 294 0 33 chr5 113067235 113067386 -39469873 - B1_Mur1 SINE Alu -1 148 3 1 1447 519 60 0 0 chr5 113067388 113067455 -39469804 + (CTTTG)n Simple_repeat Simple_repeat 1 67 0 1 1447 382 233 184 82 chr5 113067455 113067609 -39469650 - B4 SINE B4 -79 213 29 1 1447 280 299 10 40 chr5 113068703 113068804 -39468455 - L1ME3B LINE L1 -349 5891 5794 1 1447 191 139 0 65 chr5 113069284 113069330 -39467929 + (CACCAT)n Simple_repeat Simple_repeat 4 46 0 1 1447 656 24 12 0 chr5 113070688 113070770 -39466489 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1 1447 180 171 24 0 chr5 113071046 113071087 -39466172 + MIRc SINE MIR 83 124 -144 1 1447 594 208 11 11 chr5 113071347 113071527 -39465732 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1447 198 191 0 0 chr5 113071569 113071611 -39465648 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1447 657 118 8 16 chr5 113072267 113072388 -39464871 + (TTC)n Simple_repeat Simple_repeat 3 122 0 1 1447 219 200 0 0 chr5 113072388 113072414 -39464845 + polypyrimidine Low_complexity Low_complexity 16 41 0 1 1447 845 107 0 8 chr5 113072414 113072546 -39464713 + (TCCCC)n Simple_repeat Simple_repeat 3 133 0 1 1447 219 200 0 0 chr5 113072546 113072559 -39464700 + polypyrimidine Low_complexity Low_complexity 3 15 0 1 1447 216 0 0 0 chr5 113073794 113073818 -39463441 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1447 364 314 10 0 chr5 113074036 113074138 -39463121 - PB1D10 SINE Alu -5 112 10 1 1447 1636 153 39 62 chr5 113074189 113074645 -39462614 - RMER17C LTR ERVK -519 439 16 1 1447 476 163 29 23 chr5 113074648 113074821 -39462438 - RMER17B LTR ERVK -673 285 181 1 1447 1900 136 61 50 chr5 113074881 113074938 -39462321 - ORR1B2 LTR MaLR 0 367 325 1 1447 1217 96 43 0 chr5 113074938 113075125 -39462134 - B2_Mm2 SINE B2 0 195 1 1 1447 1900 136 61 50 chr5 113075125 113075430 -39461829 - ORR1B2 LTR MaLR -43 324 1 1 1447 829 250 169 42 chr5 113075572 113075927 -39461332 + RLTR11A LTR ERVK 10 409 -119 1 1447 564 178 0 0 chr5 113075908 113076015 -39461244 + ORR1A0 LTR MaLR 5 111 -235 1 1447 263 217 36 45 chr5 113075982 113076098 -39461161 + ORR1A0 LTR MaLR 9 114 -232 1 1447 619 193 22 39 chr5 113076161 113076324 -39460935 + RLTR11A LTR ERVK 372 528 0 1 1447 1359 258 56 38 chr5 113076467 113076914 -39460345 - Lx8 LINE L1 -209 7264 6810 1 1447 1884 91 50 4 chr5 113076963 113077355 -39459904 + ORR1A2 LTR MaLR 1 394 0 1 1447 680 267 116 38 chr5 113077359 113077651 -39459608 - Lx8 LINE L1 -796 6677 6363 1 1447 903 255 70 141 chr5 113077648 113077716 -39459543 + L1_Mur3 LINE L1 2885 2958 -2922 1 1447 317 0 0 70 chr5 113077716 113077773 -39459486 + (TAAAA)n Simple_repeat Simple_repeat 1 53 0 1 1447 903 255 70 141 chr5 113077773 113078089 -39459170 + L1_Mur3 LINE L1 2959 3282 -2598 1 1447 304 150 0 4 chr5 113078089 113078166 -39459093 + B1_Mur4 SINE Alu 47 150 0 1 1447 903 255 70 141 chr5 113078166 113078463 -39458796 + L1_Mur3 LINE L1 3283 3588 -2292 1 1447 486 148 0 111 chr5 113079016 113079115 -39458144 + BGLII_B LTR ERVK 1 88 -353 1 1447 882 76 0 0 chr5 113079131 113079250 -39458009 + (GAAA)n Simple_repeat Simple_repeat 2 120 0 1 1447 1246 149 7 18 chr5 113079634 113079936 -39457323 + BGLII_B LTR ERVK 87 441 0 1 1447 4343 75 0 14 chr5 113080146 113080738 -39456521 + MT2B2 LTR ERVL 1 584 0 1 1447 246 256 138 36 chr5 113080850 113080988 -39456271 - MER53 DNA hAT -4 189 38 1 1447 2306 143 11 0 chr5 113081014 113081392 -39455867 + RLTR14 LTR ERV1 1 382 0 1 1447 356 143 8 183 chr5 113082299 113082419 -39454840 - RLTR25A LTR ERVK 0 1103 1005 1 1447 215 239 0 0 chr5 113082416 113082462 -39454797 - ID SINE ID -171 53 8 1 1447 1122 179 154 66 chr5 113082716 113082969 -39454290 + RMER17C LTR ERVK 1 276 -134 1 1447 2774 110 13 52 chr5 113082969 113083430 -39453829 - RLTR41 LTR ERV1 0 446 4 1 1447 1122 179 154 66 chr5 113083430 113083553 -39453706 + RMER17C LTR ERVK 277 410 0 1 1447 1589 168 25 81 chr5 113083775 113084209 -39453050 - RMER17C LTR ERVK 0 410 1 1 1447 288 0 0 0 chr5 113084450 113084482 -39452777 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1 1447 731 182 110 11 chr5 113084679 113084975 -39452284 + RMER17C LTR ERVK 13 410 0 1 1447 226 279 0 12 chr5 113085895 113085975 -39451284 + (GGATG)n Simple_repeat Simple_repeat 4 82 0 1 1447 1801 127 7 127 chr5 113085980 113086523 -39450736 + RMER17C LTR ERVK 1 439 -519 1 1447 708 45 0 0 chr5 113086784 113086872 -39450387 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 1447 807 241 16 16 chr5 113086980 113087166 -39450093 - ID_B1 SINE B4 -37 187 2 1 1447 324 321 33 18 chr5 113087519 113087652 -39449607 - MTE2a LTR MaLR -239 180 48 1 1447 370 305 8 22 chr5 113087924 113088058 -39449201 - B4A SINE B4 -38 254 123 1 1447 204 40 0 0 chr5 113088081 113088106 -39449153 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1 1447 1134 65 39 0 chr5 113088106 113088261 -39448998 - B2_Mm2 SINE B2 -33 162 2 1 1447 279 167 0 0 chr5 113090394 113090442 -39446817 + MER117 DNA MER1_type 107 154 -43 1 1447 304 49 0 0 chr5 113090474 113090515 -39446744 + B1_Mm SINE Alu 99 139 -8 1 1447 311 297 0 13 chr5 113090988 113091063 -39446196 - ID4 SINE ID 0 83 10 1 1447 3088 71 0 5 chr5 113091477 113091886 -39445373 + MTB_Mm LTR MaLR 1 407 0 1 1447 192 77 0 0 chr5 113091894 113091920 -39445339 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1447 304 330 10 20 chr5 113092138 113092240 -39445019 + MER117 DNA MER1_type 85 185 -12 1 1447 259 169 14 14 chr5 113093785 113093857 -39443402 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1447 209 247 10 30 chr5 113093906 113094006 -39443253 + (TATATG)n Simple_repeat Simple_repeat 1 98 0 1 1447 600 158 16 48 chr5 113093988 113094174 -39443085 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1447 203 170 21 0 chr5 113094209 113094256 -39443003 + (TATG)n Simple_repeat Simple_repeat 4 51 0 1 1447 843 293 45 8 chr5 113094312 113094556 -39442703 - B4 SINE B4 0 292 40 1 1447 415 252 78 16 chr5 113095239 113095368 -39441891 - B3A SINE B2 -58 140 4 1 1447 850 79 39 0 chr5 113095410 113095700 -39441559 + (TCTA)n Simple_repeat Simple_repeat 1 301 0 1 1447 261 222 259 0 chr5 113095744 113095825 -39441434 - B3A SINE B2 -75 123 22 1 1447 218 192 80 88 chr5 113095842 113095931 -39441328 - MIRb SINE MIR -56 206 116 1 1447 1320 186 179 20 chr5 113097657 113098008 -39439251 - MTD LTR MaLR -12 407 1 1 1447 603 237 39 43 chr5 113098018 113098070 -39439189 + HAL1-2a_MD LINE L1 2319 2373 -651 1 1447 1285 85 28 0 chr5 113098070 113098246 -39439013 - B2_Mm2 SINE B2 -14 181 1 1 1447 603 237 39 43 chr5 113098246 113098400 -39438859 + HAL1-2a_MD LINE L1 2374 2524 -500 1 1447 2403 86 3 3 chr5 113098485 113098812 -39438447 - ORR1A2 LTR MaLR 0 327 1 1 1447 9587 140 69 23 chr5 113098812 113100688 -39436571 - ORR1A2-int LTR MaLR 0 1963 1 1 1447 1772 99 3 76 chr5 113100692 113100747 -39436512 - ORR1A2 LTR MaLR -8 319 273 1 1447 212 0 0 35 chr5 113100755 113100784 -39436475 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1 1447 1088 68 0 0 chr5 113100784 113100921 -39436338 - B1_Mm SINE Alu -9 138 2 2 1447 1772 99 3 76 chr5 113100921 113101181 -39436078 - ORR1A2 LTR MaLR -55 272 27 1 1447 195 350 50 0 chr5 113101766 113101866 -39435393 + MIRb SINE MIR 49 153 -115 2 1447 931 274 19 30 chr5 113102145 113102416 -39434843 + B4 SINE B4 2 269 -23 2 1447 406 383 0 0 chr5 113102507 113102687 -39434572 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1447 368 388 0 6 chr5 113102711 113102890 -39434369 + (CA)n Simple_repeat Simple_repeat 1 178 0 2 1447 320 0 25 0 chr5 113104197 113104237 -39433022 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1447 609 321 36 52 chr5 113104400 113104650 -39432609 + B4A SINE B4 1 246 -46 2 1447 204 40 0 0 chr5 113105216 113105241 -39432018 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1447 201 234 0 0 chr5 113105275 113105322 -39431937 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1447 324 64 0 0 chr5 113105374 113105421 -39431838 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 2 1447 459 0 0 0 chr5 113105461 113105512 -39431747 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1447 217 314 28 28 chr5 113105995 113106103 -39431156 - L2 LINE L2 -568 2851 2744 2 1447 582 206 23 9 chr5 113106219 113106660 -39430599 + (TG)n Simple_repeat Simple_repeat 1 447 0 2 1447 251 202 18 18 chr5 113106682 113106793 -39430466 + (TG)n Simple_repeat Simple_repeat 2 112 0 2 1447 782 276 28 35 chr5 113106805 113107094 -39430165 - B4 SINE B4 -3 289 3 2 1447 616 194 0 51 chr5 113109122 113109283 -39427976 + ORR1D1 LTR MaLR 1 143 -241 2 1447 1281 188 60 7 chr5 113109348 113109655 -39427604 + ORR1D1 LTR MaLR 40 374 0 2 1447 760 253 101 5 chr5 113109702 113109901 -39427358 - ID_B1 SINE B4 -6 218 1 2 1447 302 281 111 10 chr5 113109995 113110204 -39427055 + L1M5 LINE L1 5262 5501 -858 2 1447 340 273 91 57 chr5 113110542 113110717 -39426542 - B3A SINE B2 -16 182 2 2 1447 225 65 0 0 chr5 113110761 113110792 -39426467 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1447 7558 7 4 0 chr5 113111561 113112380 -39424879 + RLTR13B2 LTR ERVK 1 822 0 2 1447 426 182 18 9 chr5 113112814 113112925 -39424334 + CT-rich Low_complexity Low_complexity 4 115 0 2 1447 683 221 0 0 chr5 113112938 113113060 -39424199 - ID_B1 SINE B4 -1 223 102 2 1447 638 65 11 0 chr5 113113277 113113369 -39423890 + (TG)n Simple_repeat Simple_repeat 1 93 0 2 1447 369 301 80 41 chr5 113113377 113113610 -39423649 - B4A SINE B4 -16 276 21 2 1447 253 289 186 0 chr5 113113625 113113722 -39423537 - PB1D10 SINE Alu -2 115 1 2 1447 1921 106 39 60 chr5 113113990 113114321 -39422938 - ORR1A3 LTR MaLR -2 324 1 2 1447 182 333 43 0 chr5 113114333 113114402 -39422857 + L2a LINE L2 3349 3420 -6 2 1447 252 346 73 86 chr5 113114618 113115013 -39422246 + MLT1B LTR MaLR 1 390 0 2 1448 236 300 108 77 chr5 113115594 113115724 -39421535 + MLT1B LTR MaLR 1 134 -256 2 1448 235 315 0 51 chr5 113116433 113116610 -39420649 + G-rich Low_complexity Low_complexity 4 171 0 2 1448 260 291 0 77 chr5 113116622 113116816 -39420443 + G-rich Low_complexity Low_complexity 2 180 0 2 1448 410 248 10 10 chr5 113117018 113117093 -39420166 + B4A SINE B4 29 103 -189 2 1448 922 276 140 21 chr5 113117093 113117422 -39419837 + ORR1D2 LTR MaLR 3 370 0 2 1448 410 253 25 25 chr5 113117422 113117479 -39419780 + B4A SINE B4 104 161 -131 2 1448 341 348 0 9 chr5 113117539 113117652 -39419607 + (CA)n Simple_repeat Simple_repeat 2 113 0 2 1448 246 62 0 0 chr5 113118037 113118069 -39419190 + (TC)n Simple_repeat Simple_repeat 1 32 0 2 1448 616 202 23 0 chr5 113118636 113118809 -39418450 + (TATG)n Simple_repeat Simple_repeat 2 178 0 2 1448 651 141 11 50 chr5 113118766 113118945 -39418314 + (TATATG)n Simple_repeat Simple_repeat 3 174 0 2 1448 216 200 0 0 chr5 113118973 113119018 -39418241 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 2 1448 335 327 9 0 chr5 113119027 113119134 -39418125 - PB1D10 SINE Alu -9 108 1 2 1448 1107 278 49 35 chr5 113120335 113120622 -39416637 - B4 SINE B4 0 292 2 2 1448 644 265 51 51 chr5 113120644 113120918 -39416341 - B4A SINE B4 -18 274 1 2 1448 227 31 31 0 chr5 113123124 113123156 -39414103 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2 1448 188 229 226 16 chr5 113123594 113123656 -39413603 + L3 LINE CR1 3437 3511 -978 2 1448 718 261 163 13 chr5 113123660 113123893 -39413366 + B4 SINE B4 2 269 -23 2 1448 384 59 0 0 chr5 113123893 113123944 -39413315 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1448 569 231 145 17 chr5 113123957 113124129 -39413130 + MLT1A0 LTR MaLR 149 342 -23 2 1448 561 213 23 19 chr5 113124850 113125652 -39411607 + (CA)n Simple_repeat Simple_repeat 1 805 0 2 1448 316 139 12 12 chr5 113125695 113125775 -39411484 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1448 241 229 25 125 chr5 113125993 113126073 -39411186 + L2b LINE L2 3317 3421 -5 2 1448 228 292 15 0 chr5 113126085 113126150 -39411109 + GA-rich Low_complexity Low_complexity 2 67 0 2 1448 750 11 0 0 chr5 113126876 113126963 -39410296 + (TC)n Simple_repeat Simple_repeat 2 88 0 2 1448 198 0 0 0 chr5 113126963 113126984 -39410275 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1448 261 0 0 0 chr5 113126984 113127012 -39410247 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 1448 281 309 48 48 chr5 113127602 113127748 -39409511 + MIRb SINE MIR 110 255 -13 2 1448 254 308 69 14 chr5 113128872 113129016 -39408243 - MIRc SINE MIR -101 167 13 2 1448 268 254 148 9 chr5 113129663 113129778 -39407481 - MIRb SINE MIR -109 159 29 2 1448 202 61 61 0 chr5 113130038 113130071 -39407188 + (GGGA)n Simple_repeat Simple_repeat 1 35 0 2 1448 1054 331 3 3 chr5 113131293 113131578 -39405681 + B4A SINE B4 8 292 0 2 1448 1269 139 0 4 chr5 113132514 113132792 -39404467 + (TCCA)n Simple_repeat Simple_repeat 1 276 0 2 1448 327 287 42 25 chr5 113134122 113134240 -39403019 - MER20 DNA MER1_type -32 187 68 2 1448 309 89 0 0 chr5 113134707 113134752 -39402507 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1448 481 283 174 21 chr5 113134759 113135001 -39402258 - B4A SINE B4 -11 281 3 2 1448 629 287 52 49 chr5 113135381 113135648 -39401611 + MamRep434 DNA TcMar 122 389 -37 2 1448 393 279 18 72 chr5 113136839 113136860 -39400399 + ID_B1 SINE B4 68 224 0 2 1448 759 173 7 41 chr5 113136860 113137005 -39400254 + B1_Mur4 SINE Alu 11 150 0 2 1448 568 274 106 12 chr5 113139248 113139418 -39397841 + MTE2b LTR MaLR 22 207 -172 2 1448 1141 126 15 0 chr5 113139455 113139728 -39397531 + (TAGA)n Simple_repeat Simple_repeat 1 277 0 2 1448 781 290 130 22 chr5 113139918 113140401 -39396858 + Lx9 LINE L1 5394 5958 -1686 2 1448 243 194 55 25 chr5 113141029 113141116 -39396143 - MIRm SINE MIR -101 167 81 2 1448 1623 219 56 71 chr5 113141216 113141590 -39395669 + Lx9 LINE L1 5535 5942 -1531 2 1448 2336 91 28 12 chr5 113141590 113141912 -39395347 + ORR1A2 LTR MaLR 1 327 0 2 1448 6147 205 36 52 chr5 113141912 113143329 -39393930 + Lx9 LINE L1 5943 7482 -162 2 1448 495 0 0 0 chr5 113143329 113143384 -39393875 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1448 6147 181 32 50 chr5 113143384 113143522 -39393737 + Lx9 LINE L1 7483 7643 -1 2 1448 576 191 151 62 chr5 113143565 113143744 -39393515 - B3A SINE B2 -3 195 1 2 1448 231 261 14 42 chr5 113143682 113143754 -39393505 - tRNA-Ala-GCY_ tRNA tRNA -1 74 5 2 1448 328 316 8 66 chr5 113143834 113143956 -39393303 - PB1 SINE Alu -12 115 1 2 1448 226 232 0 104 chr5 113144103 113144180 -39393079 + RMER6C LTR ERVK 345 413 -277 2 1448 270 252 13 0 chr5 113144245 113144318 -39392941 - MIR SINE MIR -141 127 51 2 1448 273 29 0 0 chr5 113144776 113144810 -39392449 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1448 364 171 51 26 chr5 113144992 113145070 -39392189 - HAL1-3A_ME LINE L1 -810 2048 1969 2 1448 526 211 0 16 chr5 113145070 113145324 -39391935 + (TG)n Simple_repeat Simple_repeat 1 249 0 2 1448 188 249 63 93 chr5 113146097 113146245 -39391014 + MIR SINE MIR 22 170 -98 2 1448 913 223 49 5 chr5 113146339 113146524 -39390735 + B3 SINE B2 3 195 -21 2 1448 405 0 0 0 chr5 113149398 113149443 -39387816 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1448 282 116 0 0 chr5 113149443 113149486 -39387773 + (TCC)n Simple_repeat Simple_repeat 3 45 0 2 1448 1765 184 16 0 chr5 113149742 113150057 -39387202 + MTC LTR MaLR 1 320 -101 2 1448 2146 100 28 19 chr5 113150056 113150373 -39386886 + ORR1A2 LTR MaLR 8 327 0 2 1448 535 208 19 0 chr5 113150373 113150477 -39386782 + MTC LTR MaLR 314 419 0 2 1448 206 351 27 0 chr5 113151418 113151492 -39385767 - MIRc SINE MIR -121 147 72 2 1448 229 268 78 84 chr5 113151995 113152069 -39385190 + MTEb LTR MaLR 205 281 -89 2 1448 378 0 0 0 chr5 113152069 113152111 -39385148 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1448 278 217 65 0 chr5 113152111 113152203 -39385056 + MTEb LTR MaLR 282 379 0 2 1448 2242 60 21 142 chr5 113152253 113152625 -39384634 + ORR1A2 LTR MaLR 1 327 0 2 1448 598 233 113 0 chr5 113153441 113153591 -39383668 + ORR1B1 LTR MaLR 226 392 -2 2 1448 305 311 111 13 chr5 113153975 113154128 -39383131 + MER20 DNA MER1_type 16 183 -36 2 1448 382 96 57 19 chr5 113154418 113154524 -39382735 + (CA)n Simple_repeat Simple_repeat 1 110 0 2 1448 372 198 33 60 chr5 113154544 113154768 -39382491 + (CATA)n Simple_repeat Simple_repeat 1 217 0 2 1448 427 207 22 60 chr5 113154785 113154970 -39382289 + (CATA)n Simple_repeat Simple_repeat 3 180 0 2 1448 243 238 35 53 chr5 113154940 113155109 -39382150 + (CATATA)n Simple_repeat Simple_repeat 1 166 0 2 1448 321 26 0 0 chr5 113155125 113155163 -39382096 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1448 201 344 21 32 chr5 113156212 113156305 -39380954 + MIRb SINE MIR 31 122 -146 2 1448 247 35 0 0 chr5 113157269 113157298 -39379961 - L2b LINE L2 -17 3358 3330 2 1448 194 175 0 70 chr5 113157270 113157313 -39379946 - MIRb SINE MIR -14 254 215 2 1448 425 294 33 59 chr5 113157552 113157704 -39379555 - Helitron3Na_Mam RC Helitron -64 422 275 2 1448 220 195 0 0 chr5 113158039 113158080 -39379179 - PB1D10 SINE Alu -26 91 51 2 1448 252 313 0 24 chr5 113158195 113158280 -39378979 + (TA)n Simple_repeat Simple_repeat 1 83 0 2 1448 423 52 0 0 chr5 113158280 113158338 -39378921 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2 1448 299 277 0 46 chr5 113158832 113158919 -39378340 - MLT1A1 LTR MaLR -2 406 324 2 1448 423 0 0 0 chr5 113159254 113159301 -39377958 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1448 636 222 14 20 chr5 113159413 113159560 -39377699 + B1_Mur2 SINE Alu 1 146 -3 3 1448 394 324 61 65 chr5 113159847 113160108 -39377151 + ORR1E LTR MaLR 23 282 -77 3 1448 288 0 0 0 chr5 113160278 113160310 -39376949 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 3 1448 2526 129 8 13 chr5 113160329 113160715 -39376544 + ORR1B1 LTR MaLR 3 386 -8 3 1448 1396 225 80 69 chr5 113160719 113161096 -39376163 + MTD LTR MaLR 25 405 -14 3 1448 2832 239 201 34 chr5 113161105 113162167 -39375092 + MTD-int LTR MaLR 19 1258 0 3 1448 1182 239 141 11 chr5 113162167 113162535 -39374724 + MTD LTR MaLR 1 416 -3 3 1448 307 357 16 82 chr5 113162837 113163020 -39374239 + B4 SINE B4 4 174 -118 3 1448 239 368 10 50 chr5 113163140 113163240 -39374019 + Tigger5 DNA MER2_type 29 124 -2282 3 1448 526 328 29 6 chr5 113164593 113164765 -39372494 - MLT1F1 LTR MaLR 0 569 394 3 1448 3083 59 8 2 chr5 113164786 113165179 -39372080 + MTB LTR MaLR 1 395 -5 3 1448 343 250 77 0 chr5 113165383 113165487 -39371772 + PB1D10 SINE Alu 3 114 -3 3 1448 364 256 182 55 chr5 113165770 113165935 -39371324 + B4A SINE B4 107 292 0 3 1448 180 97 0 0 chr5 113165954 113165985 -39371274 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 3 1448 200 200 0 0 chr5 113166253 113166288 -39370971 + CT-rich Low_complexity Low_complexity 1 35 0 3 1448 270 236 20 7 chr5 113166459 113166608 -39370651 + C-rich Low_complexity Low_complexity 6 156 0 3 1448 576 198 27 0 chr5 113166941 113167052 -39370207 + PB1D9 SINE Alu 1 114 -6 3 1448 828 118 0 0 chr5 113167255 113167382 -39369877 + (CA)n Simple_repeat Simple_repeat 2 128 0 3 1448 621 303 32 5 chr5 113167916 113168102 -39369157 + ID_B1 SINE B4 2 192 -32 3 1448 505 291 121 39 chr5 113168632 113168734 -39368525 - MTE2a LTR MaLR -45 334 218 3 1448 510 17 0 0 chr5 113168734 113168793 -39368466 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 1448 505 291 121 39 chr5 113168793 113168947 -39368312 - MTE2a LTR MaLR -162 217 57 3 1448 1632 143 152 7 chr5 113168972 113169281 -39367978 + ORR1B1 LTR MaLR 41 394 0 3 1448 274 253 141 24 chr5 113169281 113169332 -39367927 - MTE2a LTR MaLR -299 80 20 3 1448 437 296 43 63 chr5 113170683 113170874 -39366385 - MER20 DNA MER1_type -20 199 1 3 1448 305 278 93 0 chr5 113171065 113171173 -39366086 + PB1D9 SINE Alu 3 120 0 3 1448 338 272 94 4 chr5 113171373 113171515 -39365744 + L1MA4A LINE L1 5775 5930 -370 3 1448 675 211 0 0 chr5 113171527 113171683 -39365576 + (TG)n Simple_repeat Simple_repeat 2 157 0 3 1448 365 218 0 37 chr5 113171770 113171851 -39365408 + RSINE1 SINE B4 7 84 -81 3 1448 1489 78 0 16 chr5 113172939 113173133 -39364126 - B2_Mm2 SINE B2 -3 192 2 3 1448 255 366 111 21 chr5 113173211 113173401 -39363858 + MER58A DNA MER1_type 17 223 -1 3 1448 355 259 7 33 chr5 113175369 113175521 -39361738 + HAL1-2a_MD LINE L1 2358 2505 -519 3 1448 267 179 0 0 chr5 113175524 113175591 -39361668 + (CAA)n Simple_repeat Simple_repeat 3 69 0 3 1448 434 272 18 41 chr5 113175591 113175760 -39361499 + HAL1-2a_MD LINE L1 2343 2507 -517 3 1448 350 211 9 0 chr5 113175762 113175871 -39361388 + (CAA)n Simple_repeat Simple_repeat 1 110 0 3 1448 426 226 80 25 chr5 113175875 113176038 -39361221 + HAL1-2a_MD LINE L1 2343 2514 -510 3 1448 438 203 0 0 chr5 113176038 113176156 -39361103 + (CAA)n Simple_repeat Simple_repeat 2 119 0 3 1448 807 257 76 40 chr5 113177759 113178035 -39359224 - B4 SINE B4 -5 287 2 3 1448 479 253 103 7 chr5 113178217 113178372 -39358887 + MER63B DNA AcHobo 21 190 -246 3 1448 303 28 0 0 chr5 113178457 113178493 -39358766 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1448 232 238 128 23 chr5 113178508 113178594 -39358665 + MER63B DNA AcHobo 335 429 -7 3 1448 192 296 0 40 chr5 113179115 113179189 -39358070 + MIRc SINE MIR 78 148 -120 3 1448 425 324 7 0 chr5 113179255 113179394 -39357865 + MER20 DNA MER1_type 38 177 -42 3 1448 289 298 0 12 chr5 113180553 113180638 -39356621 + MLT1C LTR MaLR 350 433 -34 3 1448 328 277 78 35 chr5 113180912 113181028 -39356231 - RSINE1 SINE B4 -33 132 12 3 1448 776 93 17 0 chr5 113181281 113181399 -39355860 + (TCCA)n Simple_repeat Simple_repeat 3 122 0 3 1448 510 17 0 0 chr5 113181405 113181464 -39355795 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 3 1448 465 19 0 0 chr5 113182152 113182206 -39355053 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 3 1448 835 165 11 0 chr5 113182220 113182396 -39354863 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 3 1448 225 0 0 0 chr5 113182957 113182982 -39354277 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1448 539 312 60 82 chr5 113183390 113183757 -39353502 + ORR1E LTR MaLR 1 359 0 3 1448 216 0 0 0 chr5 113184009 113184033 -39353226 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1448 430 226 125 0 chr5 113186796 113187032 -39350227 + Lx9 LINE L1 7357 7643 -1 3 1448 210 267 0 26 chr5 113187033 113187110 -39350149 + A-rich Low_complexity Low_complexity 2 76 0 3 1448 1360 96 11 5 chr5 113187134 113187323 -39349936 + B2_Mm2 SINE B2 3 192 -3 3 1448 203 329 0 14 chr5 113189019 113189090 -39348169 + G-rich Low_complexity Low_complexity 4 73 0 3 1448 1025 230 128 16 chr5 113191157 113191237 -39346022 + ORR1C1 LTR MaLR 33 184 -194 3 1448 459 0 0 0 chr5 113191237 113191288 -39345971 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1448 1025 161 61 20 chr5 113191288 113191471 -39345788 + ORR1C1 LTR MaLR 185 378 0 3 1448 301 325 78 17 chr5 113191963 113192079 -39345180 + L2b LINE L2 3253 3375 0 3 1448 1244 246 142 3 chr5 113192205 113192543 -39344716 + MTD LTR MaLR 27 411 -8 3 1448 360 0 0 0 chr5 113192550 113192590 -39344669 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1448 441 129 0 0 chr5 113193122 113193192 -39344067 + (TG)n Simple_repeat Simple_repeat 2 71 0 3 1448 387 0 0 0 chr5 113193620 113193663 -39343596 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 3 1448 201 74 0 0 chr5 113193664 113193691 -39343568 + (CAGCC)n Simple_repeat Simple_repeat 5 31 0 3 1448 295 299 29 7 chr5 113195189 113195317 -39341942 - PB1D10 SINE Alu 0 149 18 3 1448 627 195 12 23 chr5 113195679 113195852 -39341407 + (TATG)n Simple_repeat Simple_repeat 2 172 0 3 1448 611 228 0 6 chr5 113195865 113196046 -39341213 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1448 267 352 49 32 chr5 113196083 113196391 -39340868 + RMER12 LTR ERVK 770 1082 -240 3 1448 350 164 13 40 chr5 113197201 113197277 -39339982 + B3A SINE B2 1 74 -124 3 1448 283 341 0 72 chr5 113197724 113197863 -39339396 + B3A SINE B2 70 198 0 3 1448 280 260 13 13 chr5 113198036 113198114 -39339145 - ID4 SINE ID -4 79 2 3 1448 221 305 17 0 chr5 113199066 113199125 -39338134 + MIR SINE MIR 40 99 -163 3 1448 507 135 0 89 chr5 113199528 113199707 -39337552 + (CTGGGG)n Simple_repeat Simple_repeat 2 164 0 3 1448 234 218 0 36 chr5 113199761 113199899 -39337360 + (CTGGGG)n Simple_repeat Simple_repeat 4 136 0 3 1448 441 212 6 11 chr5 113199920 113200101 -39337158 + (CTGGGG)n Simple_repeat Simple_repeat 1 180 0 3 1448 327 149 11 44 chr5 113200130 113200221 -39337038 + (CTGGGG)n Simple_repeat Simple_repeat 3 90 0 3 1448 1041 139 4 0 chr5 113200263 113200502 -39336757 + (CTGGGG)n Simple_repeat Simple_repeat 1 240 0 3 1448 619 193 0 0 chr5 113201187 113201296 -39335963 - ID_B1 SINE B4 -5 219 111 3 1448 217 307 18 82 chr5 113202293 113202403 -39334856 + L2c LINE L2 3266 3368 -19 3 1448 186 318 170 22 chr5 113203098 113203233 -39334026 + MIR3 SINE MIR 33 187 -21 3 1448 212 383 60 9 chr5 113204483 113204599 -39332660 + ID_B1 SINE B4 48 169 -55 3 1448 308 282 94 40 chr5 113204516 113204642 -39332617 + PB1D7 SINE Alu 6 138 -12 3 1448 1119 190 36 14 chr5 113205493 113205712 -39331547 + URR1B DNA MER1_type 2 225 0 3 1448 200 343 43 0 chr5 113205935 113206005 -39331254 + MIRc SINE MIR 190 262 -6 3 1448 228 304 125 23 chr5 113206310 113206490 -39330769 - MIRb SINE MIR -2 266 61 3 1448 375 157 0 0 chr5 113206559 113206629 -39330630 + (CCA)n Simple_repeat Simple_repeat 1 70 0 3 1448 1085 214 10 0 chr5 113206629 113206835 -39330424 - B3 SINE B2 -8 208 1 3 1448 180 0 0 0 chr5 113207281 113207301 -39329958 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 3 1448 232 96 11 88 chr5 113207496 113207587 -39329672 + GA-rich Low_complexity Low_complexity 1 84 0 3 1448 341 195 6 59 chr5 113207647 113207816 -39329443 + GA-rich Low_complexity Low_complexity 1 160 0 3 1448 347 250 12 31 chr5 113207857 113208115 -39329144 + G-rich Low_complexity Low_complexity 1 252 0 3 1448 471 18 0 0 chr5 113208427 113208483 -39328776 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1448 405 0 0 0 chr5 113208483 113208527 -39328732 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1448 305 325 32 24 chr5 113208687 113208810 -39328449 + L1M4 LINE L1 4187 4310 -1836 3 1448 661 271 62 11 chr5 113209116 113209295 -39327964 - B3 SINE B2 0 216 29 3 1448 1392 212 47 107 chr5 113209385 113209833 -39327426 + RLTR11A LTR ERVK 97 517 -11 3 1448 301 218 86 52 chr5 113209970 113210003 -39327256 - MTD LTR MaLR 0 370 340 3 1448 281 0 39 39 chr5 113210003 113210054 -39327205 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 3 1448 1098 266 104 19 chr5 113210054 113210406 -39326853 - MTD LTR MaLR -32 387 1 3 1448 198 0 0 0 chr5 113211154 113211176 -39326083 + (CAGA)n Simple_repeat Simple_repeat 2 23 0 3 1448 350 154 13 0 chr5 113211989 113212067 -39325192 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 1448 950 288 21 21 chr5 113212084 113212368 -39324891 - B4A SINE B4 -7 285 2 3 1448 393 295 25 131 chr5 113212506 113212705 -39324554 + MLT1A LTR MaLR 48 225 -149 3 1448 523 212 167 0 chr5 113213149 113213281 -39323978 + RSINE1 SINE B4 12 165 0 3 1448 507 213 6 39 chr5 113213461 113213642 -39323617 + GA-rich Low_complexity Low_complexity 3 177 0 3 1448 2413 76 38 0 chr5 113213699 113214014 -39323245 + ORR1A2 LTR MaLR 1 327 0 3 1448 431 159 0 64 chr5 113216832 113216942 -39320317 + ORR1A4 LTR MaLR 1 141 -253 3 1448 331 171 0 14 chr5 113216942 113217013 -39320246 + ORR1B1 LTR MaLR 82 151 -243 3 1448 546 143 0 0 chr5 113217015 113217106 -39320153 + (CATA)n Simple_repeat Simple_repeat 2 92 0 3 1448 1074 148 82 14 chr5 113217134 113217354 -39319905 + ORR1A4 LTR MaLR 95 329 0 3 1448 379 271 43 43 chr5 113217377 113217516 -39319743 - B1F SINE Alu -1 148 10 4 1448 1037 57 44 20 chr5 113217821 113218490 -39318769 + (TCTA)n Simple_repeat Simple_repeat 1 685 0 4 1448 363 284 51 80 chr5 113219275 113219413 -39317846 - PB1D10 SINE Alu -7 142 9 4 1448 363 120 80 11 chr5 113220526 113220792 -39316467 + GA-rich Low_complexity Low_complexity 1 284 0 4 1448 282 109 22 0 chr5 113221500 113221546 -39315713 + ORR1A4-int LTR MaLR 1917 1963 0 4 1448 1530 149 17 115 chr5 113221546 113221902 -39315357 + ORR1A4 LTR MaLR 1 321 -8 4 1448 186 210 31 31 chr5 113222920 113222984 -39314275 - MIRc SINE MIR -141 127 64 4 1448 848 115 0 8 chr5 113223192 113223323 -39313936 + B1_Mus2 SINE Alu 9 138 -9 4 1448 206 327 0 0 chr5 113223323 113223378 -39313881 + G-rich Low_complexity Low_complexity 2 56 0 4 1448 266 248 60 61 chr5 113223920 113224035 -39313224 - MIRc SINE MIR -102 174 56 4 1448 387 0 0 0 chr5 113225029 113225072 -39312187 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1448 426 317 21 35 chr5 113225874 113226018 -39311241 - ID_B1 SINE B4 -1 223 82 4 1448 402 227 72 0 chr5 113226246 113226343 -39310916 + PB1D10 SINE Alu 5 108 -9 4 1448 387 182 0 0 chr5 113226855 113226932 -39310327 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1448 1801 163 46 22 chr5 113227170 113227539 -39309720 + ORR1C2 LTR MaLR 6 383 -1 4 1448 434 101 14 0 chr5 113228693 113228762 -39308497 + (TCCA)n Simple_repeat Simple_repeat 4 73 0 4 1448 219 204 0 0 chr5 113229004 113229053 -39308206 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 4 1448 890 143 6 0 chr5 113229127 113229288 -39307971 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 4 1448 396 238 130 38 chr5 113230010 113230141 -39307118 + RSINE1 SINE B4 23 165 0 4 1448 288 188 0 0 chr5 113230748 113230817 -39306442 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 1448 343 160 0 26 chr5 113230818 113230895 -39306364 + G-rich Low_complexity Low_complexity 6 80 0 4 1448 528 293 61 0 chr5 113231015 113231179 -39306080 - B4 SINE B4 -118 174 1 4 1448 344 341 30 8 chr5 113231754 113231887 -39305372 + MLT1A1 LTR MaLR 269 404 -4 4 1448 857 142 0 5 chr5 113233019 113233243 -39304016 + (TG)n Simple_repeat Simple_repeat 1 222 0 4 1448 661 226 75 0 chr5 113233258 113233404 -39303855 - ID_B1 SINE B4 -19 205 49 4 1448 750 313 69 19 chr5 113233998 113234376 -39302883 + RMER5 LTR ERV1 98 494 -40 4 1448 204 195 36 24 chr5 113234939 113235023 -39302236 + CT-rich Low_complexity Low_complexity 4 88 0 4 1448 252 344 0 0 chr5 113235311 113235404 -39301855 + PB1D10 SINE Alu 10 102 -15 4 1448 428 146 60 18 chr5 113235812 113235979 -39301280 + CT-rich Low_complexity Low_complexity 1 174 0 4 1448 275 221 21 0 chr5 113236035 113236130 -39301129 + (TATATG)n Simple_repeat Simple_repeat 6 102 0 4 1448 524 254 239 0 chr5 113236133 113236346 -39300913 - Lx8 LINE L1 -173 7300 7037 4 1448 720 216 0 0 chr5 113236355 113236626 -39300633 + (CA)n Simple_repeat Simple_repeat 1 271 0 4 1448 430 283 0 0 chr5 113237023 113237115 -39300144 - RSINE1 SINE B4 -73 92 1 4 1448 688 254 48 0 chr5 113237242 113237407 -39299852 - Lx8 LINE L1 -747 6726 6554 4 1448 259 277 0 12 chr5 113237422 113237583 -39299676 + (CA)n Simple_repeat Simple_repeat 2 160 0 4 1448 641 110 31 0 chr5 113237728 113237855 -39299404 + (TG)n Simple_repeat Simple_repeat 2 132 0 4 1448 839 210 10 30 chr5 113237860 113238061 -39299198 + B3A SINE B2 1 197 -1 4 1448 336 316 0 0 chr5 113239210 113239308 -39297951 + (TG)n Simple_repeat Simple_repeat 1 98 0 4 1448 3264 48 40 5 chr5 113239492 113239913 -39297346 + RLTR10C LTR ERVK 1 436 0 4 1448 257 181 11 0 chr5 113240135 113240229 -39297030 + (TA)n Simple_repeat Simple_repeat 1 95 0 4 1448 287 313 0 0 chr5 113240276 113240343 -39296916 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1448 775 214 93 6 chr5 113241353 113241536 -39295723 + ID_B1 SINE B4 1 199 -25 4 1448 227 146 0 59 chr5 113241549 113241600 -39295659 + B1F SINE Alu 74 121 -28 4 1448 210 188 0 59 chr5 113241613 113241664 -39295595 + B1F SINE Alu 74 121 -28 4 1448 247 233 33 65 chr5 113241662 113241676 -39295583 + B1_Mur1 SINE Alu 59 144 -2 4 1448 304 208 0 40 chr5 113241676 113241751 -39295508 + ID_B1 SINE B4 151 222 -2 4 1448 364 228 145 26 chr5 113242648 113242765 -39294494 - B4 SINE B4 -161 131 1 4 1448 180 0 0 0 chr5 113243151 113243171 -39294088 + (CAG)n Simple_repeat Simple_repeat 2 21 0 4 1448 303 93 0 0 chr5 113243323 113243366 -39293893 + (T)n Simple_repeat Simple_repeat 1 43 0 4 1448 207 0 0 0 chr5 113243732 113243755 -39293504 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1448 568 206 181 39 chr5 113243783 113243965 -39293294 - B3 SINE B2 -7 209 2 4 1448 464 335 30 12 chr5 113244463 113244629 -39292630 - MER5A DNA MER1_type 0 189 21 4 1448 852 258 138 25 chr5 113245795 113246077 -39291182 + ORR1E LTR MaLR 6 319 -40 4 1448 312 27 0 0 chr5 113246169 113246206 -39291053 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 1449 202 256 13 13 chr5 113247148 113247227 -39290032 + G-rich Low_complexity Low_complexity 5 83 0 4 1449 882 124 12 12 chr5 113247234 113247397 -39289862 + (GAAA)n Simple_repeat Simple_repeat 3 165 0 4 1449 599 190 11 33 chr5 113247434 113247565 -39289694 + GA-rich Low_complexity Low_complexity 3 129 0 4 1449 951 125 11 11 chr5 113247565 113247743 -39289516 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 4 1449 599 190 11 33 chr5 113247743 113247791 -39289468 + polypurine Low_complexity Low_complexity 130 177 0 4 1449 414 180 8 25 chr5 113248454 113248550 -39288709 + PB1D10 SINE Alu 26 118 -2 4 1449 577 204 19 127 chr5 113249484 113249641 -39287618 + B1_Mur2 SINE Alu 4 143 -6 4 1449 1156 68 0 0 chr5 113249652 113249799 -39287460 + B1_Mm SINE Alu 1 147 0 4 1449 38 0 0 0 chr5 113249891 113249929 -39287330 + AT_rich Low_complexity Low_complexity 1 38 0 4 1449 224 185 22 4 chr5 113250061 113250122 -39287137 + MIR SINE MIR 67 128 -140 4 1449 213 39 0 0 chr5 113250997 113251023 -39286236 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 4 1449 707 107 47 0 chr5 113251023 113251192 -39286067 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 4 1449 899 263 132 37 chr5 113251900 113252248 -39285011 + MTD LTR MaLR 25 405 -14 4 1449 609 221 37 0 chr5 113252520 113252656 -39284603 + B1_Mur2 SINE Alu 1 141 -8 4 1449 277 332 74 30 chr5 113252940 113253142 -39284117 + L1M5 LINE L1 2382 2592 -3554 4 1449 306 225 138 0 chr5 113253729 113253809 -39283450 - B3A SINE B2 -106 92 2 4 1449 334 282 53 5 chr5 113253941 113254055 -39283204 - ID_B1 SINE B4 -34 190 78 4 1449 498 172 0 0 chr5 113255003 113255102 -39282157 + (CA)n Simple_repeat Simple_repeat 1 99 0 4 1449 280 352 42 7 chr5 113255235 113255378 -39281881 - MIR SINE MIR -21 241 94 4 1449 753 203 0 0 chr5 113255739 113255979 -39281280 + (TG)n Simple_repeat Simple_repeat 1 240 0 4 1449 618 245 0 0 chr5 113256007 113256359 -39280900 + (TG)n Simple_repeat Simple_repeat 1 352 0 4 1449 223 224 39 0 chr5 113256548 113256624 -39280635 - L2a LINE L2 -314 3112 3029 4 1449 613 134 37 21 chr5 113257272 113257517 -39279742 + CT-rich Low_complexity Low_complexity 1 249 0 4 1449 233 229 12 31 chr5 113257680 113257842 -39279417 + (CA)n Simple_repeat Simple_repeat 2 160 0 4 1449 534 122 0 0 chr5 113257990 113258097 -39279162 + (TG)n Simple_repeat Simple_repeat 2 108 0 4 1449 421 17 17 17 chr5 113258190 113258249 -39279010 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1449 349 320 23 2 chr5 113258908 113259053 -39278206 + MIRb SINE MIR 19 164 -104 4 1449 239 250 32 65 chr5 113259591 113259715 -39277544 - MIR SINE MIR -126 136 17 4 1449 484 300 18 54 chr5 113260712 113260934 -39276325 + L1MA4A LINE L1 5717 5930 -373 4 1449 618 211 13 60 chr5 113261883 113262034 -39275225 - B1_Mur1 SINE Alu 0 149 6 4 1449 196 277 62 97 chr5 113262632 113262776 -39274483 + MIR3 SINE MIR 33 171 -37 4 1449 387 304 80 13 chr5 113264183 113264333 -39272926 + MIRb SINE MIR 103 262 -6 4 1449 1037 148 3 0 chr5 113264472 113264839 -39272420 + (TGGA)n Simple_repeat Simple_repeat 1 368 0 4 1449 1966 150 32 27 chr5 113265020 113265396 -39271863 + ORR1C1 LTR MaLR 1 378 0 4 1449 278 330 29 18 chr5 113266097 113266237 -39271022 - L2a LINE L2 -303 3123 2981 4 1449 301 256 134 16 chr5 113266571 113266698 -39270561 - ORSL DNA Tip100 -132 143 2 4 1449 261 262 90 72 chr5 113267035 113267146 -39270113 + MIRb SINE MIR 40 152 -116 4 1449 21 0 0 0 chr5 113268215 113268236 -39269023 + AT_rich Low_complexity Low_complexity 1 21 0 4 1449 325 248 13 124 chr5 113269928 113270066 -39267193 + MIRb SINE MIR 40 168 -108 4 1449 479 331 11 11 chr5 113271434 113271614 -39265645 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1449 569 299 67 56 chr5 113271666 113271950 -39265309 - B4A SINE B4 -3 289 3 4 1449 248 272 114 19 chr5 113272047 113272152 -39265107 - MIRb SINE MIR -146 122 8 4 1449 207 324 0 0 chr5 113273400 113273570 -39263689 + (TATG)n Simple_repeat Simple_repeat 2 171 0 4 1449 516 254 0 0 chr5 113274126 113274303 -39262956 + (TG)n Simple_repeat Simple_repeat 1 177 0 4 1449 207 296 0 0 chr5 113274305 113274359 -39262900 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 4 1449 372 261 11 17 chr5 113274360 113274539 -39262720 + (TATG)n Simple_repeat Simple_repeat 2 179 0 4 1449 572 249 177 12 chr5 113274548 113274796 -39262463 - B4A SINE B4 -2 290 2 4 1449 389 322 6 28 chr5 113275648 113275830 -39261429 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 4 1449 208 266 0 30 chr5 113275837 113275969 -39261290 + (TATG)n Simple_repeat Simple_repeat 4 131 0 4 1449 225 286 0 0 chr5 113275995 113276058 -39261201 + (CCCA)n Simple_repeat Simple_repeat 1 63 0 5 1449 428 257 9 9 chr5 113276536 113276650 -39260609 + RSINE1 SINE B4 2 115 -50 5 1449 404 311 91 16 chr5 113277277 113277463 -39259796 - MER113 DNA MER1_type -133 388 189 5 1449 246 62 0 0 chr5 113277503 113277535 -39259724 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 5 1449 201 39 0 0 chr5 113277606 113277632 -39259627 + (CACCC)n Simple_repeat Simple_repeat 3 28 0 5 1449 393 248 32 25 chr5 113279577 113279707 -39257552 + B4A SINE B4 36 164 -128 5 1449 396 0 0 0 chr5 113279912 113279956 -39257303 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1449 454 198 21 31 chr5 113280212 113280506 -39256753 + GA-rich Low_complexity Low_complexity 1 290 0 5 1449 283 297 20 92 chr5 113281304 113281456 -39255803 + MER103 DNA DNA 22 162 -4 5 1449 252 286 59 39 chr5 113281503 113281605 -39255654 + MIRc SINE MIR 45 148 -120 5 1449 338 295 56 32 chr5 113281874 113282000 -39255259 + HAL1-2a_MD LINE L1 2354 2482 -542 5 1449 966 242 9 19 chr5 113282756 113282967 -39254292 + B3 SINE B2 1 209 -7 5 1449 303 343 0 0 chr5 113283363 113283532 -39253727 + CT-rich Low_complexity Low_complexity 2 170 0 5 1449 246 62 0 0 chr5 113285381 113285413 -39251846 + (TCC)n Simple_repeat Simple_repeat 1 32 0 5 1449 498 70 0 0 chr5 113285413 113285484 -39251775 + (CAT)n Simple_repeat Simple_repeat 3 73 0 5 1449 911 246 54 14 chr5 113286292 113286572 -39250687 + B4 SINE B4 2 292 0 5 1449 337 222 23 23 chr5 113286580 113286755 -39250504 + (CA)n Simple_repeat Simple_repeat 1 175 0 5 1449 228 231 51 13 chr5 113286755 113286834 -39250425 + (CATATA)n Simple_repeat Simple_repeat 5 86 0 5 1449 181 206 24 55 chr5 113286838 113287002 -39250257 + (CATA)n Simple_repeat Simple_repeat 4 162 0 5 1449 416 195 34 22 chr5 113286992 113287170 -39250089 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1449 355 307 50 21 chr5 113287223 113287363 -39249896 - MER3 DNA MER1_type -61 148 5 5 1449 213 278 20 109 chr5 113287756 113287857 -39249402 - L2c LINE L2 -1 3386 3295 5 1449 196 343 59 0 chr5 113288692 113288794 -39248465 - MIR3 SINE MIR -89 119 12 5 1449 321 26 0 0 chr5 113289591 113289629 -39247630 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1449 1313 86 25 51 chr5 113289839 113290036 -39247223 - B2_Mm2 SINE B2 -1 194 3 5 1449 200 159 0 43 chr5 113290160 113290206 -39247053 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1449 1066 234 88 37 chr5 113290415 113290843 -39246416 + RMER13A LTR ERVK 102 672 -236 5 1449 310 342 80 32 chr5 113291522 113291833 -39245426 - L1M2 LINE L1 -521 5779 5454 5 1449 1478 338 143 22 chr5 113291832 113292768 -39244491 - L1_Mur3 LINE L1 -542 5338 4274 5 1449 537 16 0 0 chr5 113292768 113292830 -39244429 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1449 1478 338 143 22 chr5 113292830 113293419 -39243840 - L1_Mur3 LINE L1 -1607 4273 3630 5 1449 195 288 0 101 chr5 113293422 113293511 -39243748 + L2c LINE L2 3083 3162 -225 5 1449 202 378 0 0 chr5 113293774 113293864 -39243395 + C-rich Low_complexity Low_complexity 1 90 0 5 1449 207 59 0 121 chr5 113294418 113294476 -39242783 + (CCCCAG)n Simple_repeat Simple_repeat 1 51 0 5 1449 270 0 0 0 chr5 113297956 113297986 -39239273 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1449 342 0 0 0 chr5 113297986 113298023 -39239236 + (GA)n Simple_repeat Simple_repeat 2 39 0 5 1449 397 285 76 8 chr5 113298169 113298300 -39238959 + B1F SINE Alu 1 140 -9 5 1449 369 200 0 0 chr5 113298323 113298388 -39238871 + ID4_ SINE ID 9 73 -10 5 1449 483 60 0 0 chr5 113298399 113298466 -39238793 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 5 1449 578 147 0 18 chr5 113298474 113298585 -39238674 + GA-rich Low_complexity Low_complexity 3 111 0 5 1449 811 180 6 24 chr5 113301531 113301874 -39235385 + G-rich Low_complexity Low_complexity 1 336 0 5 1449 951 155 77 11 chr5 113301978 113302161 -39235098 + URR1B DNA MER1_type 31 225 0 5 1449 341 358 35 24 chr5 113304507 113304676 -39232583 + MIRb SINE MIR 19 189 -79 5 1449 3064 75 20 3 chr5 113304746 113305136 -39232123 + MTB LTR MaLR 4 400 0 5 1449 308 244 0 12 chr5 113305748 113305831 -39231428 + MIR SINE MIR 63 144 -118 5 1449 229 330 104 52 chr5 113306314 113306506 -39230753 + MamRep38 DNA hAT 49 250 -45 5 1449 205 237 0 0 chr5 113306951 113306989 -39230270 + (CCCCG)n Simple_repeat Simple_repeat 2 39 0 5 1449 26 0 0 0 chr5 113307750 113307776 -39229483 + AT_rich Low_complexity Low_complexity 1 26 0 5 1449 1008 101 0 41 chr5 113307786 113307931 -39229328 + B1_Mus1 SINE Alu 1 139 -9 5 1449 189 0 0 0 chr5 113307931 113307952 -39229307 + (TAA)n Simple_repeat Simple_repeat 2 22 0 5 1449 522 0 0 0 chr5 113308606 113308664 -39228595 + (GA)n Simple_repeat Simple_repeat 1 58 0 5 1449 2958 85 17 34 chr5 113309032 113309446 -39227813 + MTB_Mm LTR MaLR 1 407 0 5 1449 5206 151 15 92 chr5 113309501 113310485 -39226774 + RMER13B LTR ERVK 1 908 0 5 1449 252 59 0 0 chr5 113310516 113310550 -39226709 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1449 5289 190 78 21 chr5 113310587 113311841 -39225418 + Lx7 LINE L1 4602 5949 -1511 5 1449 331 320 70 44 chr5 113311866 113311900 -39225359 - CYRA11_Mm Unknown Y-chromosome -206 411 177 5 1449 838 167 108 15 chr5 113311900 113312095 -39225164 + URR1A DNA MER1_type 8 220 -6 5 1449 3430 247 47 17 chr5 113312098 113312975 -39224284 + Lx7 LINE L1 5973 6875 -821 5 1449 2089 144 18 0 chr5 113312990 113313323 -39223936 + ORR1B1 LTR MaLR 47 385 -9 5 1449 304 323 23 69 chr5 113313383 113313556 -39223703 - L1MEg LINE L1 -4139 1945 1781 5 1449 22 0 0 0 chr5 113313625 113313647 -39223612 + AT_rich Low_complexity Low_complexity 1 22 0 5 1449 278 341 105 5 chr5 113313649 113313858 -39223401 + L1M3 LINE L1 5476 5705 -463 5 1449 459 0 0 0 chr5 113314216 113314267 -39222992 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1449 540 45 0 0 chr5 113314356 113314423 -39222836 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 5 1449 1325 81 27 11 chr5 113314424 113314611 -39222648 + B2_Mm2 SINE B2 1 190 -5 5 1449 189 121 0 0 chr5 113314654 113314687 -39222572 + (TCTCCC)n Simple_repeat Simple_repeat 4 36 0 5 1449 468 0 0 0 chr5 113314689 113314741 -39222518 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1449 573 208 0 0 chr5 113314951 113315119 -39222140 + (CA)n Simple_repeat Simple_repeat 1 168 0 5 1449 555 215 0 0 chr5 113315169 113315341 -39221918 + (CA)n Simple_repeat Simple_repeat 1 172 0 5 1449 599 206 0 6 chr5 113315369 113315550 -39221709 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1449 181 158 26 0 chr5 113317276 113317314 -39219945 - MIRc SINE MIR -146 122 84 5 1449 233 290 39 29 chr5 113317529 113317632 -39219627 - MIRm SINE MIR -145 131 28 5 1449 794 196 7 26 chr5 113318557 113318709 -39218550 - B1_Mur2 SINE Alu 0 149 1 5 1449 404 249 47 12 chr5 113319047 113319218 -39218041 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 5 1449 629 202 9 0 chr5 113320061 113320170 -39217089 + PB1D10 SINE Alu 1 110 -7 5 1449 547 197 0 101 chr5 113320233 113320391 -39216868 + MTC LTR MaLR 38 179 -242 5 1449 1431 150 54 18 chr5 113320400 113320678 -39216581 + MTC LTR MaLR 134 421 0 5 1449 480 35 0 0 chr5 113321500 113321558 -39215701 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1449 228 250 26 13 chr5 113322048 113322125 -39215134 + MER117 DNA MER1_type 89 166 -31 5 1449 248 268 14 0 chr5 113322168 113322239 -39215020 + MER117 DNA MER1_type 89 160 -37 5 1449 323 241 12 12 chr5 113323224 113323308 -39213951 + MIR SINE MIR 40 123 -139 5 1449 410 284 0 56 chr5 113323840 113323982 -39213277 + C-rich Low_complexity Low_complexity 6 139 0 5 1449 541 184 32 0 chr5 113324605 113324763 -39212496 + (CA)n Simple_repeat Simple_repeat 1 163 0 5 1449 773 201 0 7 chr5 113324813 113324958 -39212301 + RSINE1 SINE B4 3 146 -19 5 1449 333 0 0 0 chr5 113324978 113325015 -39212244 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 5 1449 522 0 0 0 chr5 113325817 113325875 -39211384 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1449 225 0 0 0 chr5 113325875 113325899 -39211360 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1449 324 189 395 26 chr5 113325943 113326057 -39211202 + RSINE1 SINE B4 2 157 -8 5 1449 2285 67 37 113 chr5 113326262 113326615 -39210644 - ORR1A2 LTR MaLR 0 327 2 5 1449 250 290 0 0 chr5 113326767 113326829 -39210430 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1449 237 261 21 83 chr5 113326843 113326939 -39210320 - B4 SINE B4 0 292 203 5 1449 366 302 16 40 chr5 113326959 113327083 -39210176 - B4A SINE B4 -165 127 7 5 1449 1928 134 55 60 chr5 113327086 113327468 -39209791 - MTC LTR MaLR -8 413 34 5 1449 2762 181 185 34 chr5 113327475 113328216 -39209043 - MTC-int LTR MaLR 0 1258 406 5 1449 333 0 0 0 chr5 113328216 113328253 -39209006 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1449 723 112 0 0 chr5 113328283 113328417 -39208842 + (TG)n Simple_repeat Simple_repeat 2 135 0 5 1449 372 221 43 9 chr5 113328909 113329126 -39208133 + (TG)n Simple_repeat Simple_repeat 1 224 0 5 1449 328 121 75 8 chr5 113329193 113329326 -39207933 + (TG)n Simple_repeat Simple_repeat 1 142 0 5 1449 535 127 46 7 chr5 113329350 113329501 -39207758 + (TG)n Simple_repeat Simple_repeat 1 157 0 5 1449 214 184 0 0 chr5 113329820 113329858 -39207401 + L2b LINE L2 3333 3370 -5 5 1449 848 299 55 8 chr5 113330441 113330694 -39206565 - MTD LTR MaLR -150 269 5 5 1449 372 264 77 21 chr5 113330967 113331110 -39206149 - LTR16A LTR ERVL -295 156 6 5 1449 261 0 0 0 chr5 113331559 113331588 -39205671 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1449 1126 148 0 11 chr5 113331618 113331809 -39205450 - RMER19C LTR ERVK 0 611 423 5 1449 3119 34 0 3 chr5 113331812 113332167 -39205092 - IAPEY2_LTR LTR ERVK -3 354 1 5 1449 3210 122 29 30 chr5 113332167 113332878 -39204381 - IAPEY3-int LTR ERVK 0 7581 6907 5 1449 455 35 0 0 chr5 113332878 113332935 -39204324 - IAPEY3-int LTR ERVK -2770 4910 4854 5 1449 3340 74 9 2 chr5 113332930 113333379 -39203880 - IAPEY3-int LTR ERVK -4991 2689 2238 5 1449 9262 121 11 35 chr5 113333356 113334850 -39202409 - IAPEY3-int LTR ERVK -5698 1982 524 5 1449 684 159 37 15 chr5 113334850 113334984 -39202275 - IAPEY3-int LTR ERVK -7518 162 26 5 1449 2792 45 3 11 chr5 113334997 113335354 -39201905 - IAPEY2_LTR LTR ERVK -3 354 1 5 1449 952 173 199 129 chr5 113335358 113335702 -39201557 - RMER19C LTR ERVK -198 413 50 5 1449 1153 61 0 0 chr5 113335702 113335849 -39201410 + B1_Mus2 SINE Alu 1 147 0 5 1449 952 173 199 129 chr5 113335849 113335890 -39201369 - RMER19C LTR ERVK -562 49 2 5 1449 1928 196 30 5 chr5 113335922 113336327 -39200932 + MTD LTR MaLR 4 418 -1 5 1449 915 78 0 0 chr5 113337003 113337145 -39200114 + (GA)n Simple_repeat Simple_repeat 2 143 0 5 1449 350 208 37 56 chr5 113338236 113338251 -39199008 + ORR1A3-int LTR MaLR 601 613 -1350 6 1449 3005 73 36 97 chr5 113338251 113338410 -39198849 + MT2B2 LTR ERVL 1 118 -466 6 1449 234 0 0 0 chr5 113338410 113338436 -39198823 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 6 1449 1083 65 0 0 chr5 113338436 113338575 -39198684 - B1_Mus1 SINE Alu -9 139 1 6 1449 3005 73 36 97 chr5 113338575 113338941 -39198318 + MT2B2 LTR ERVL 119 494 -90 6 1449 262 291 23 48 chr5 113340196 113340300 -39196959 - PB1D10 SINE Alu -1 116 16 6 1449 25 0 0 0 chr5 113340536 113340561 -39196698 + AT_rich Low_complexity Low_complexity 1 25 0 6 1449 384 273 10 0 chr5 113341229 113341328 -39195931 - PB1D10 SINE Alu -1 116 17 6 1449 275 0 0 28 chr5 113341493 113341529 -39195730 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1449 489 17 0 0 chr5 113342476 113342534 -39194725 + (TAG)n Simple_repeat Simple_repeat 3 60 0 6 1449 234 212 82 59 chr5 113344456 113344541 -39192718 + PB1D10 SINE Alu 24 110 -7 6 1449 250 225 298 8 chr5 113344938 113345059 -39192200 + Lx4B LINE L1 6903 7058 0 6 1449 513 166 24 36 chr5 113346005 113346624 -39190635 + (CAGAGA)n Simple_repeat Simple_repeat 1 611 0 6 1449 32 0 0 0 chr5 113349381 113349413 -39187846 + AT_rich Low_complexity Low_complexity 1 32 0 6 1449 371 244 11 17 chr5 113349447 113349622 -39187637 + (TATATG)n Simple_repeat Simple_repeat 5 178 0 6 1449 373 279 6 6 chr5 113349606 113349786 -39187473 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1449 837 253 51 55 chr5 113349786 113350079 -39187180 - B4A SINE B4 0 292 1 6 1449 331 264 0 25 chr5 113350695 113350858 -39186401 + (TATG)n Simple_repeat Simple_repeat 4 162 0 6 1449 303 284 0 0 chr5 113350871 113350998 -39186261 + (TATG)n Simple_repeat Simple_repeat 4 130 0 6 1449 277 291 27 64 chr5 113351164 113351274 -39185985 + B1F SINE Alu 44 149 0 6 1449 265 202 100 12 chr5 113352774 113352846 -39184413 + B1F1 SINE Alu 23 101 -48 6 1449 234 185 104 30 chr5 113352846 113352913 -39184346 + ID SINE ID 1 72 -152 6 1449 901 79 57 7 chr5 113353353 113353493 -39183766 + B2_Mm2 SINE B2 44 190 -5 6 1449 183 156 0 0 chr5 113353610 113353642 -39183617 + A-rich Low_complexity Low_complexity 1 32 0 6 1449 351 278 60 9 chr5 113353644 113353760 -39183499 + L1MD LINE L1 3081 3202 -2944 6 1449 363 332 144 10 chr5 113353993 113354194 -39183065 - MER2 DNA MER2_type -94 251 24 6 1449 622 287 121 8 chr5 113354590 113354846 -39182413 + B4A SINE B4 8 292 0 6 1449 334 372 0 0 chr5 113354846 113355010 -39182249 + (CA)n Simple_repeat Simple_repeat 1 164 0 6 1449 219 314 0 0 chr5 113355049 113355205 -39182054 + (TATG)n Simple_repeat Simple_repeat 3 158 0 6 1449 375 254 0 0 chr5 113355221 113355359 -39181900 + (TG)n Simple_repeat Simple_repeat 1 138 0 6 1449 540 267 0 0 chr5 113356234 113356414 -39180845 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1449 198 191 0 0 chr5 113356450 113356497 -39180762 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1449 502 174 49 6 chr5 113357103 113357265 -39179994 + CT-rich Low_complexity Low_complexity 6 174 0 6 1449 289 295 82 17 chr5 113357306 113357439 -39179820 + ORR1E LTR MaLR 37 186 -184 6 1449 307 318 62 57 chr5 113358082 113358292 -39178967 - L1MC4 LINE L1 -3962 2253 2043 6 1449 329 315 48 21 chr5 113358427 113358590 -39178669 - B4A SINE B4 -66 158 2 6 1449 284 333 0 0 chr5 113359516 113359594 -39177665 + C-rich Low_complexity Low_complexity 1 78 0 6 1449 306 335 110 13 chr5 113359594 113359887 -39177372 - L1MA6 LINE L1 -269 6028 5719 6 1449 251 250 0 0 chr5 113359969 113360021 -39177238 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1449 495 213 13 13 chr5 113360025 113360177 -39177082 + (CATA)n Simple_repeat Simple_repeat 2 153 0 6 1449 414 282 46 37 chr5 113360177 113360394 -39176865 - RMER12 LTR ERVK -334 988 770 6 1449 319 242 17 0 chr5 113360394 113360514 -39176745 + (CA)n Simple_repeat Simple_repeat 2 123 0 6 1449 416 211 32 0 chr5 113360514 113360609 -39176650 - PB1D7 SINE Alu -11 109 12 6 1449 262 292 104 37 chr5 113361199 113361334 -39175925 + ID_B1 SINE B4 80 223 -1 6 1449 211 265 28 38 chr5 113363182 113363288 -39173971 + (TATG)n Simple_repeat Simple_repeat 3 107 0 6 1449 695 251 24 29 chr5 113363290 113363495 -39173764 - B3 SINE B2 -12 204 1 6 1449 2111 126 3 23 chr5 113363753 113364095 -39173164 - ORR1A1 LTR MaLR -11 335 1 6 1449 305 305 6 0 chr5 113364789 113364963 -39172296 + (TG)n Simple_repeat Simple_repeat 1 175 0 6 1449 746 216 6 58 chr5 113364975 113365147 -39172112 - RSINE1 SINE B4 0 165 3 6 1449 238 254 15 0 chr5 113366605 113366672 -39170587 - ID2 SINE ID -13 70 3 6 1449 819 124 0 0 chr5 113366948 113367093 -39170166 + (CA)n Simple_repeat Simple_repeat 1 145 0 6 1449 333 167 106 82 chr5 113367164 113367249 -39170010 + 7SK RNA RNA 1 87 -244 6 1449 188 121 61 0 chr5 113368542 113368575 -39168684 - MIRb SINE MIR -199 69 35 6 1449 1111 259 52 70 chr5 113368715 113369101 -39168158 + MTE2b LTR MaLR 1 379 0 6 1449 504 208 73 24 chr5 113369759 113369882 -39167377 - RSINE1 SINE B4 -23 142 14 6 1449 186 150 0 0 chr5 113369913 113369953 -39167306 + (G)n Simple_repeat Simple_repeat 1 40 0 6 1449 21 0 0 0 chr5 113371694 113371715 -39165544 + AT_rich Low_complexity Low_complexity 1 21 0 6 1449 288 241 34 22 chr5 113371848 113371937 -39165322 + PB1D10 SINE Alu 1 90 -27 6 1449 564 15 0 0 chr5 113371952 113372017 -39165242 + (TC)n Simple_repeat Simple_repeat 1 65 0 6 1449 423 0 0 0 chr5 113372017 113372063 -39165196 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1449 2649 142 70 8 chr5 113372227 113372724 -39164535 + RLTR11A LTR ERVK 1 528 0 6 1449 2125 159 38 5 chr5 113372823 113373214 -39164045 + MTC LTR MaLR 18 421 0 6 1449 231 152 0 0 chr5 113374835 113374881 -39162378 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1449 666 239 168 4 chr5 113376311 113376555 -39160704 + B4A SINE B4 1 284 -8 6 1449 456 218 19 13 chr5 113376607 113376765 -39160494 + (CATA)n Simple_repeat Simple_repeat 4 162 0 6 1449 364 324 6 33 chr5 113376786 113376968 -39160291 + (CATA)n Simple_repeat Simple_repeat 2 178 0 6 1449 344 282 0 6 chr5 113376991 113377148 -39160111 + (TA)n Simple_repeat Simple_repeat 2 157 0 6 1449 255 272 8 58 chr5 113377150 113377271 -39159988 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 6 1450 439 320 6 17 chr5 113377286 113377458 -39159801 + (CATATA)n Simple_repeat Simple_repeat 2 171 0 6 1450 253 317 114 9 chr5 113377898 113378003 -39159256 - MER58C DNA MER1_type -42 173 58 6 1450 1016 208 146 74 chr5 113378470 113378971 -39158288 - RMER4B LTR ERVK -9 576 1 6 1450 611 294 48 65 chr5 113378992 113379286 -39157973 + B4 SINE B4 4 292 0 6 1450 2233 152 52 5 chr5 113379561 113379963 -39157296 - MTC LTR MaLR 0 421 1 6 1450 1027 128 0 22 chr5 113380269 113380453 -39156806 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 6 1450 226 342 88 92 chr5 113380621 113380882 -39156377 + MER67A LTR ERV1 12 271 -272 6 1450 211 244 0 0 chr5 113381468 113381513 -39155746 + A-rich Low_complexity Low_complexity 1 45 0 6 1450 276 53 0 0 chr5 113381770 113381808 -39155451 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1450 198 0 0 0 chr5 113381815 113381837 -39155422 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 6 1450 462 96 0 0 chr5 113382292 113382365 -39154894 + (TGG)n Simple_repeat Simple_repeat 2 74 0 6 1450 239 284 15 0 chr5 113382366 113382433 -39154826 - ID2 SINE ID -11 72 5 6 1450 186 43 0 0 chr5 113383583 113383606 -39153653 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1450 443 215 34 0 chr5 113383642 113383756 -39153503 + B1_Mur1 SINE Alu 18 135 -14 6 1450 600 182 0 0 chr5 113384821 113384958 -39152301 + (TG)n Simple_repeat Simple_repeat 1 137 0 6 1450 530 221 0 24 chr5 113384958 113385083 -39152176 + (TATG)n Simple_repeat Simple_repeat 4 125 0 6 1450 539 233 0 11 chr5 113385086 113385268 -39151991 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1450 513 142 0 0 chr5 113385658 113385771 -39151488 + (TC)n Simple_repeat Simple_repeat 2 114 0 6 1450 504 303 132 0 chr5 113386521 113386755 -39150504 + Lx9 LINE L1 7075 7339 -305 6 1450 181 176 9 47 chr5 113386914 113387021 -39150238 + GA-rich Low_complexity Low_complexity 2 104 0 6 1450 29 28 0 0 chr5 113387276 113387312 -39149947 + AT_rich Low_complexity Low_complexity 1 36 0 6 1450 324 120 0 0 chr5 113388434 113388484 -39148775 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1450 194 242 0 15 chr5 113388752 113388819 -39148440 + CT-rich Low_complexity Low_complexity 1 66 0 6 1450 236 338 0 24 chr5 113388831 113388913 -39148346 - ID4_ SINE ID -2 81 2 6 1450 1179 62 6 22 chr5 113389421 113389601 -39147658 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 6 1450 237 83 0 0 chr5 113389698 113389734 -39147525 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1450 337 290 10 10 chr5 113390951 113391052 -39146207 + MER45A DNA Tip100 50 150 -28 6 1450 245 304 0 28 chr5 113391752 113391823 -39145436 + MTEb LTR MaLR 13 81 -298 6 1450 305 291 183 33 chr5 113391859 113392012 -39145247 + MTEb LTR MaLR 186 361 -18 6 1450 623 206 0 6 chr5 113392020 113392196 -39145063 + (CA)n Simple_repeat Simple_repeat 1 175 0 6 1450 315 150 0 0 chr5 113392219 113392279 -39144980 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1450 1312 136 228 24 chr5 113393508 113393846 -39143413 + RMER17C LTR ERVK 4 410 0 6 1450 4008 37 23 6 chr5 113394848 113395365 -39141894 + L1Md_F3 LINE L1 6044 6569 -15 6 1450 252 86 0 0 chr5 113395416 113395451 -39141808 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1450 977 70 25 19 chr5 113396012 113396172 -39141087 + (GGAAA)n Simple_repeat Simple_repeat 3 163 0 6 1450 498 17 0 0 chr5 113396625 113396684 -39140575 + (TTCC)n Simple_repeat Simple_repeat 4 62 0 6 1450 869 101 220 0 chr5 113396699 113396858 -39140401 - B2_Mm2 SINE B2 0 195 2 6 1450 390 315 65 47 chr5 113397453 113397623 -39139636 + MER3 DNA MER1_type 37 209 0 6 1450 303 183 83 0 chr5 113397929 113397989 -39139270 + ID2 SINE ID 3 67 -16 7 1450 342 115 0 0 chr5 113398017 113398069 -39139190 + (CACCAT)n Simple_repeat Simple_repeat 5 56 0 7 1450 299 250 43 11 chr5 113398802 113398895 -39138364 + PB1D10 SINE Alu 2 97 -20 7 1450 1093 102 0 22 chr5 113398908 113399089 -39138170 + (GGGA)n Simple_repeat Simple_repeat 2 178 0 7 1450 805 219 0 38 chr5 113401002 113401187 -39136072 - BGLII_B LTR ERVK -10 431 254 7 1450 1173 138 8 115 chr5 113402084 113402337 -39134922 - URR1A DNA MER1_type 0 226 1 7 1450 310 197 27 40 chr5 113403126 113403200 -39134059 - HAL1-3A_ME LINE L1 -810 2048 1976 7 1450 517 236 11 6 chr5 113403205 113403384 -39133875 + (TATG)n Simple_repeat Simple_repeat 1 180 0 7 1450 664 218 6 6 chr5 113403396 113403576 -39133683 + (TATG)n Simple_repeat Simple_repeat 1 180 0 7 1450 509 267 37 7 chr5 113404042 113404178 -39133081 + B1F SINE Alu 9 148 -1 7 1450 763 200 39 0 chr5 113404848 113405003 -39132256 + RSINE1 SINE B4 3 163 -2 7 1450 600 161 7 14 chr5 113405006 113405151 -39132108 + (CA)n Simple_repeat Simple_repeat 2 145 0 7 1450 1951 150 115 0 chr5 113406425 113406791 -39130468 - MTC LTR MaLR -8 413 6 7 1450 1765 82 71 32 chr5 113407340 113407706 -39129553 - ORR1A2 LTR MaLR 0 346 1 7 1450 1180 242 91 3 chr5 113407889 113408208 -39129051 + MTE2b LTR MaLR 31 377 -2 7 1450 245 283 0 0 chr5 113408218 113408278 -39128981 - ID_B1 SINE B4 -77 147 88 7 1450 333 314 23 0 chr5 113409625 113409876 -39127383 + (TCCA)n Simple_repeat Simple_repeat 1 256 0 7 1450 319 132 106 65 chr5 113409776 113409946 -39127313 + (CATCC)n Simple_repeat Simple_repeat 3 179 0 7 1450 205 109 69 52 chr5 113410030 113410088 -39127171 + (CATCC)n Simple_repeat Simple_repeat 1 59 0 7 1450 225 289 12 24 chr5 113410791 113410876 -39126383 - ID SINE ID -139 85 2 7 1450 223 143 0 39 chr5 113410892 113410943 -39126316 + (TATG)n Simple_repeat Simple_repeat 2 50 0 7 1450 810 222 35 57 chr5 113412029 113412258 -39125001 - ID_B1 SINE B4 0 224 1 7 1450 431 348 0 0 chr5 113412791 113412955 -39124304 + (CA)n Simple_repeat Simple_repeat 2 165 0 7 1450 285 183 0 0 chr5 113412981 113413041 -39124218 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1450 457 281 11 33 chr5 113413057 113413241 -39124018 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1450 260 204 11 0 chr5 113413335 113413352 -39123907 + (CA)n Simple_repeat Simple_repeat 1 17 0 7 1450 495 0 0 0 chr5 113413352 113413407 -39123852 + (GA)n Simple_repeat Simple_repeat 2 56 0 7 1450 260 204 11 0 chr5 113413407 113413477 -39123782 + (CA)n Simple_repeat Simple_repeat 2 72 0 7 1450 343 353 86 81 chr5 113413876 113414014 -39123245 + L1MD LINE L1 4777 4923 -1223 7 1450 468 290 12 24 chr5 113414014 113414180 -39123079 + RSINE1 SINE B4 2 165 0 7 1450 385 331 101 50 chr5 113414180 113414498 -39122761 + L1MD LINE L1 4924 5235 -911 7 1450 410 269 67 0 chr5 113414511 113414660 -39122599 + L1MD LINE L1 5338 5496 -682 7 1450 750 23 0 0 chr5 113414691 113414779 -39122480 + (GGA)n Simple_repeat Simple_repeat 3 90 0 7 1450 239 324 45 9 chr5 113414902 113415014 -39122245 + MTE2b LTR MaLR 23 138 -221 7 1450 391 225 67 11 chr5 113415107 113415196 -39122063 - MTC LTR MaLR -3 418 325 7 1450 1952 138 55 30 chr5 113415196 113415561 -39121698 + ORR1C1 LTR MaLR 1 374 -4 7 1450 1730 97 118 0 chr5 113415560 113415848 -39121411 - MTC LTR MaLR -99 322 1 7 1450 312 301 53 9 chr5 113416133 113416247 -39121012 + MTE2b LTR MaLR 247 365 -14 7 1450 393 149 42 30 chr5 113416574 113416740 -39120519 + (CA)n Simple_repeat Simple_repeat 1 168 0 7 1450 500 130 49 12 chr5 113416758 113416921 -39120338 + (CA)n Simple_repeat Simple_repeat 2 170 0 7 1450 349 302 40 40 chr5 113417827 113417951 -39119308 - RSINE1 SINE B4 -24 141 18 7 1450 574 116 0 0 chr5 113417979 113418065 -39119194 + B2_Mm2 SINE B2 2 87 -108 7 1450 1013 86 20 7 chr5 113418060 113418223 -39119036 + B2_Mm2 SINE B2 35 216 0 7 1450 501 367 48 29 chr5 113418511 113419030 -39118229 - L1M5 LINE L1 -656 5788 5260 7 1450 3331 114 12 31 chr5 113419072 113419905 -39117354 + RMER19A LTR ERVK 1 732 -5 7 1450 588 246 87 44 chr5 113420046 113420229 -39117030 + B3A SINE B2 1 191 -7 7 1450 425 365 90 15 chr5 113420624 113421385 -39115874 - L1MEf LINE L1 -3222 2924 2095 7 1450 421 305 0 0 chr5 113421385 113421490 -39115769 - RSINE1 SINE B4 -44 121 17 7 1450 728 284 118 40 chr5 113421643 113421984 -39115275 + MTE2a LTR MaLR 40 405 -14 7 1450 358 301 96 19 chr5 113423214 113423370 -39113889 + B4A SINE B4 2 169 -123 7 1450 557 243 105 5 chr5 113423638 113423828 -39113431 + B3 SINE B2 2 210 -6 7 1450 1022 82 0 14 chr5 113423845 113423993 -39113266 + B1_Mus1 SINE Alu 1 146 -2 7 1450 484 186 0 64 chr5 113424049 113424158 -39113101 + ID_B1 SINE B4 123 224 0 7 1450 373 328 163 51 chr5 113424220 113424576 -39112683 + L1MD LINE L1 5425 5820 -539 7 1450 360 260 0 0 chr5 113424582 113424659 -39112600 + B1_Mur1 SINE Alu 42 118 -31 7 1450 305 190 0 0 chr5 113424982 113425040 -39112219 - B3 SINE B2 -9 207 150 7 1450 246 190 24 37 chr5 113425048 113425130 -39112129 + (TATATG)n Simple_repeat Simple_repeat 6 86 0 7 1450 641 234 0 40 chr5 113425142 113425293 -39111966 - B3 SINE B2 -13 203 59 7 1450 1329 164 122 10 chr5 113425294 113425590 -39111669 + ORR1D1 LTR MaLR 35 363 -11 7 1450 22 35 0 0 chr5 113425649 113425678 -39111581 + AT_rich Low_complexity Low_complexity 1 29 0 7 1450 441 149 14 0 chr5 113425793 113425867 -39111392 + PB1D10 SINE Alu 27 101 -16 7 1450 610 164 172 0 chr5 113426290 113426424 -39110835 + RSINE1 SINE B4 3 159 -6 7 1450 198 103 0 0 chr5 113426766 113426795 -39110464 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1450 262 326 0 43 chr5 113427010 113427235 -39110024 + CT-rich Low_complexity Low_complexity 1 215 0 7 1450 678 58 0 0 chr5 113427378 113427465 -39109794 + (TG)n Simple_repeat Simple_repeat 1 87 0 7 1450 264 59 0 0 chr5 113427570 113427604 -39109655 + (ATTG)n Simple_repeat Simple_repeat 1 34 0 7 1450 396 260 52 0 chr5 113427606 113427702 -39109557 - PB1D9 SINE Alu -15 105 5 7 1450 423 329 103 0 chr5 113427710 113427923 -39109336 - B4A SINE B4 -57 235 1 7 1450 420 20 0 0 chr5 113428437 113428486 -39108773 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1450 624 268 52 39 chr5 113429785 113430014 -39107245 + B4A SINE B4 61 292 0 7 1450 230 285 7 0 chr5 113430030 113430167 -39107092 + (CA)n Simple_repeat Simple_repeat 1 138 0 7 1450 338 272 4 0 chr5 113430194 113430477 -39106782 + (CA)n Simple_repeat Simple_repeat 1 284 0 7 1450 1320 53 25 74 chr5 113430892 113431094 -39106165 + B2_Mm2 SINE B2 1 192 -3 7 1450 1123 164 23 18 chr5 113431185 113431251 -39106008 - URR1B DNA MER1_type -6 219 157 7 1450 258 32 0 0 chr5 113431251 113431282 -39105977 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1450 1123 164 23 18 chr5 113431282 113431432 -39105827 - URR1B DNA MER1_type -69 156 2 7 1450 186 43 0 0 chr5 113431565 113431588 -39105671 + (TCTCCC)n Simple_repeat Simple_repeat 3 25 0 7 1450 339 246 0 0 chr5 113431598 113431667 -39105592 - ID4_ SINE ID -14 69 1 7 1450 297 288 64 7 chr5 113431686 113431826 -39105433 - B1F1 SINE Alu -1 148 1 7 1450 209 179 12 60 chr5 113432431 113432501 -39104758 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 7 1450 474 70 0 0 chr5 113432501 113432572 -39104687 + (TG)n Simple_repeat Simple_repeat 1 71 0 7 1450 209 179 12 60 chr5 113432572 113432584 -39104675 + (TTTG)n Simple_repeat Simple_repeat 2 13 0 7 1450 742 180 231 16 chr5 113433180 113433366 -39103893 + URR1A DNA MER1_type 1 226 0 7 1450 790 189 42 0 chr5 113433648 113433791 -39103468 - RSINE1 SINE B4 -14 151 3 7 1450 656 260 29 24 chr5 113434112 113434321 -39102938 + ID_B1 SINE B4 2 211 -13 7 1450 314 251 562 62 chr5 113435843 113436028 -39101231 + B4 SINE B4 7 283 -9 7 1450 447 120 10 42 chr5 113437807 113437903 -39099356 + CT-rich Low_complexity Low_complexity 4 96 0 7 1450 513 155 10 30 chr5 113437951 113438051 -39099208 - ID_B1 SINE B4 -4 220 123 7 1450 523 296 49 39 chr5 113438876 113439080 -39098179 + B4A SINE B4 27 232 -60 7 1450 567 215 9 2 chr5 113439080 113439207 -39098052 + B1_Mur1 SINE Alu 1 126 -21 7 1450 2049 150 63 48 chr5 113439218 113439371 -39097888 - MTC LTR MaLR -2 419 250 7 1450 246 32 0 0 chr5 113439371 113439402 -39097857 + (G)n Simple_repeat Simple_repeat 1 31 0 7 1450 2049 150 63 48 chr5 113439402 113439661 -39097598 - MTC LTR MaLR -172 249 2 7 1450 291 361 112 93 chr5 113441436 113441705 -39095554 + B4 SINE B4 3 276 -16 7 1450 299 326 0 0 chr5 113443513 113443602 -39093657 + ID_B1 SINE B4 2 90 -134 7 1450 358 324 0 28 chr5 113444193 113444374 -39092885 + G-rich Low_complexity Low_complexity 3 178 0 7 1450 283 192 27 0 chr5 113444667 113444740 -39092519 + CT-rich Low_complexity Low_complexity 3 77 0 7 1450 306 0 0 0 chr5 113445931 113445965 -39091294 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 7 1450 599 322 35 0 chr5 113446203 113446397 -39090862 + B4 SINE B4 28 228 -64 7 1450 278 373 67 0 chr5 113446397 113446531 -39090728 + RSINE1 SINE B4 2 144 -21 7 1450 236 179 0 125 chr5 113446565 113446629 -39090630 + B4 SINE B4 237 292 0 7 1450 315 233 22 33 chr5 113446629 113446811 -39090448 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1450 243 0 0 0 chr5 113447660 113447687 -39089572 + (CA)n Simple_repeat Simple_repeat 2 28 0 7 1450 513 0 0 0 chr5 113447687 113447743 -39089516 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1450 372 188 21 21 chr5 113448000 113448141 -39089118 + (CA)n Simple_repeat Simple_repeat 1 141 0 7 1450 203 173 19 0 chr5 113448194 113448246 -39089013 + (CA)n Simple_repeat Simple_repeat 1 53 0 7 1450 422 307 28 14 chr5 113448287 113448429 -39088830 + B1F SINE Alu 4 147 -2 7 1450 618 344 69 15 chr5 113448433 113448679 -39088580 + B4A SINE B4 2 265 -27 7 1450 384 77 0 0 chr5 113448679 113448731 -39088528 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1450 2217 110 19 12 chr5 113448731 113449053 -39088206 + ORR1A3 LTR MaLR 3 326 0 7 1450 618 344 69 15 chr5 113449053 113449079 -39088180 + B4A SINE B4 266 289 -3 7 1450 336 99 48 24 chr5 113449089 113449172 -39088087 + (CAGA)n Simple_repeat Simple_repeat 4 88 0 7 1450 416 286 89 0 chr5 113449201 113449313 -39087946 + B3A SINE B2 2 123 -75 7 1450 1184 61 6 6 chr5 113449647 113449813 -39087446 + B2_Mm1t SINE B2 2 167 -26 7 1450 379 99 406 0 chr5 113449865 113449966 -39087293 + B2_Mm2 SINE B2 48 189 -6 8 1450 208 194 15 53 chr5 113451073 113451204 -39086055 + (TCTG)n Simple_repeat Simple_repeat 4 129 0 8 1450 453 204 0 0 chr5 113451258 113451405 -39085854 + (TG)n Simple_repeat Simple_repeat 2 148 0 8 1450 253 261 0 0 chr5 113451423 113451488 -39085771 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1450 210 169 51 13 chr5 113451491 113451569 -39085690 + (TCTG)n Simple_repeat Simple_repeat 4 84 0 8 1450 540 210 0 0 chr5 113451575 113451737 -39085522 + (TG)n Simple_repeat Simple_repeat 2 163 0 8 1450 292 302 135 0 chr5 113451941 113452037 -39085222 + PB1D10 SINE Alu 3 111 -6 8 1450 697 297 9 79 chr5 113452841 113453068 -39084191 + ID_B1 SINE B4 13 223 -1 8 1450 186 103 0 0 chr5 113453195 113453224 -39084035 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 8 1450 265 354 55 8 chr5 113454107 113454236 -39083023 - MLT1E1A LTR MaLR -93 587 470 8 1450 1246 144 0 11 chr5 113454236 113454426 -39082833 + B2_Mm2 SINE B2 1 188 -7 8 1450 265 368 49 49 chr5 113454426 113454560 -39082699 - MLT1E1A LTR MaLR -211 469 342 8 1450 636 239 4 4 chr5 113455460 113455712 -39081547 + (TG)n Simple_repeat Simple_repeat 1 252 0 8 1450 243 270 0 31 chr5 113455740 113455805 -39081454 - ID4_ SINE ID 0 83 21 8 1450 229 240 39 26 chr5 113455824 113455901 -39081358 - B1_Mm SINE Alu -52 95 18 8 1450 260 328 24 32 chr5 113455842 113455968 -39081291 - ID_B1 SINE B4 -68 156 32 8 1450 228 364 39 47 chr5 113456157 113456284 -39080975 + MT2A LTR ERVL 5 130 -403 8 1450 683 327 45 114 chr5 113456173 113456572 -39080687 + MTE2b LTR MaLR 9 419 -2 8 1450 199 237 0 38 chr5 113456585 113456664 -39080595 + GA-rich Low_complexity Low_complexity 1 76 0 8 1450 1222 68 0 0 chr5 113456746 113456894 -39080365 + B1_Mus1 SINE Alu 1 148 0 8 1450 631 87 42 24 chr5 113457019 113457184 -39080075 + (TG)n Simple_repeat Simple_repeat 1 168 0 8 1450 993 205 41 10 chr5 113457633 113457830 -39079429 + B3 SINE B2 1 203 -13 8 1450 465 253 12 0 chr5 113457830 113458073 -39079186 + (TA)n Simple_repeat Simple_repeat 1 246 0 8 1450 385 252 34 0 chr5 113458198 113458304 -39078955 + PB1D10 SINE Alu 8 115 -2 8 1450 428 318 13 0 chr5 113458315 113458466 -39078793 + L1MC3 LINE L1 7441 7593 -192 8 1450 333 200 0 0 chr5 113458913 113458973 -39078286 + B1_Mur3 SINE Alu 4 63 -86 8 1450 233 358 74 62 chr5 113459038 113459214 -39078045 - B4A SINE B4 -113 179 2 8 1450 407 285 38 12 chr5 113459254 113459414 -39077845 - L1MC5 LINE L1 -1080 6881 6718 8 1450 479 141 0 11 chr5 113459499 113459592 -39077667 + (TG)n Simple_repeat Simple_repeat 1 92 0 8 1450 197 254 14 0 chr5 113459633 113459704 -39077555 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 1450 193 269 9 19 chr5 113459754 113459860 -39077399 + (TATG)n Simple_repeat Simple_repeat 4 108 0 8 1450 1188 231 24 31 chr5 113459894 113460184 -39077075 - B4A SINE B4 -3 289 2 8 1450 287 285 58 76 chr5 113461462 113461633 -39075626 + MTD LTR MaLR 239 406 -13 8 1450 1192 198 4 31 chr5 113461796 113462025 -39075234 - URR1B DNA MER1_type 0 225 3 8 1450 225 340 87 20 chr5 113462074 113462224 -39075035 + L1M2 LINE L1 3502 3661 -2482 8 1450 2132 181 31 35 chr5 113462393 113462874 -39074385 + RLTR16 LTR ERVK 1 479 -26 8 1450 213 39 0 0 chr5 113462924 113462950 -39074309 + (G)n Simple_repeat Simple_repeat 1 26 0 8 1450 237 65 0 0 chr5 113462997 113463028 -39074231 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1450 432 130 0 0 chr5 113463161 113463230 -39074029 + (CA)n Simple_repeat Simple_repeat 1 69 0 8 1450 499 272 133 13 chr5 113463233 113463471 -39073788 - L1MA4 LINE L1 -193 5963 5695 8 1450 902 284 22 95 chr5 113463479 113463848 -39073411 - MTE2a LTR MaLR -15 364 23 8 1450 1041 257 17 12 chr5 113463921 113464235 -39073024 - Lx2B LINE L1 -643 5657 5371 8 1450 287 272 122 86 chr5 113464238 113464516 -39072743 + L1_Rod LINE L1 4930 5217 -630 8 1450 337 312 31 55 chr5 113465006 113465169 -39072090 - MIRb SINE MIR -41 227 69 8 1450 730 225 0 48 chr5 113465253 113465440 -39071819 - B3A SINE B2 0 198 21 8 1450 265 320 122 22 chr5 113465622 113465876 -39071383 - RSINE1 SINE B4 0 292 14 8 1450 335 148 22 22 chr5 113465951 113466041 -39071218 + C-rich Low_complexity Low_complexity 6 95 0 8 1450 1742 189 68 3 chr5 113466331 113466696 -39070563 + RLTR40 LTR ERVK 14 402 -415 8 1450 2337 85 61 32 chr5 113466699 113467074 -39070185 - ORR1B1 LTR MaLR -8 386 1 8 1450 1471 202 60 56 chr5 113467075 113467489 -39069770 + RLTR40 LTR ERVK 398 813 -4 8 1450 1028 175 50 5 chr5 113468460 113468661 -39068598 + B3 SINE B2 6 215 -1 8 1450 2193 141 69 5 chr5 113468859 113469191 -39068068 - MTC LTR MaLR -2 419 71 8 1450 477 0 0 0 chr5 113469191 113469244 -39068015 + (TC)n Simple_repeat Simple_repeat 2 54 0 8 1450 2193 141 69 5 chr5 113469244 113469304 -39067955 - MTC LTR MaLR -351 70 2 8 1450 180 184 0 0 chr5 113470316 113470365 -39066894 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1450 256 296 0 8 chr5 113470407 113470646 -39066613 + (CA)n Simple_repeat Simple_repeat 1 236 0 8 1450 279 0 0 0 chr5 113470878 113470909 -39066350 + (CCCCCA)n Simple_repeat Simple_repeat 5 35 0 8 1450 305 274 23 21 chr5 113471192 113471311 -39065948 + ID4_ SINE ID 6 122 -30 8 1450 360 0 0 0 chr5 113471622 113471662 -39065597 + (CAG)n Simple_repeat Simple_repeat 2 41 0 8 1450 243 288 0 14 chr5 113472061 113472135 -39065124 + MLT1K LTR MaLR 412 484 -111 8 1450 244 364 15 22 chr5 113472830 113472965 -39064294 - MIRb SINE MIR -25 243 110 8 1450 921 28 0 18 chr5 113473163 113473272 -39063987 + U6 snRNA snRNA 1 107 0 8 1450 5551 57 5 89 chr5 113473272 113473408 -39063851 + L1Md_F2 LINE L1 5838 5973 -609 8 1450 1228 29 0 0 chr5 113473408 113473546 -39063713 + B1_Mus1 SINE Alu 1 138 -10 8 1450 5551 57 5 89 chr5 113473546 113474222 -39063037 + L1Md_F2 LINE L1 5974 6582 0 8 1450 925 267 108 47 chr5 113474619 113474961 -39062298 - MTEb LTR MaLR -4 375 13 8 1450 454 238 134 0 chr5 113475521 113475658 -39061601 - MLT1F LTR MaLR -254 315 151 8 1450 369 0 0 0 chr5 113475819 113475860 -39061399 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1450 431 286 140 66 chr5 113476238 113476481 -39060778 + MLT1H LTR MaLR 90 350 -199 8 1450 244 320 63 8 chr5 113476590 113476716 -39060543 + MIR SINE MIR 44 176 -86 8 1450 280 237 184 0 chr5 113476759 113476835 -39060424 + PB1D10 SINE Alu 15 104 -13 8 1450 243 330 11 11 chr5 113476842 113476931 -39060328 + GA-rich Low_complexity Low_complexity 2 90 0 8 1450 227 247 75 11 chr5 113477177 113477271 -39059988 + MIRc SINE MIR 52 151 -117 8 1450 252 86 0 0 chr5 113477309 113477344 -39059915 + (CCA)n Simple_repeat Simple_repeat 2 36 0 8 1450 1065 241 87 12 chr5 113477660 113477970 -39059289 - ORR1D2 LTR MaLR 0 370 31 8 1450 340 258 43 86 chr5 113478016 113478156 -39059103 - ORR1D2 LTR MaLR -236 134 1 8 1450 279 0 0 0 chr5 113479383 113479414 -39057845 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1450 423 0 0 0 chr5 113479808 113479855 -39057404 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1450 306 0 0 0 chr5 113480167 113480201 -39057058 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1450 225 108 0 0 chr5 113480281 113480318 -39056941 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1450 273 57 0 0 chr5 113480367 113480402 -39056857 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1450 509 150 10 0 chr5 113480418 113480518 -39056741 + (TG)n Simple_repeat Simple_repeat 1 101 0 8 1450 323 150 17 0 chr5 113480574 113480634 -39056625 - HAL1-3A_ME LINE L1 -840 2018 1958 8 1450 909 225 22 63 chr5 113480860 113481083 -39056176 + B3 SINE B2 2 215 -1 8 1450 274 333 48 0 chr5 113481695 113481800 -39055459 - L2b LINE L2 -30 3345 3236 8 1450 359 255 108 0 chr5 113481975 113482077 -39055182 + RMER5 LTR ERV1 191 303 -231 8 1450 2420 124 63 10 chr5 113482114 113482513 -39054746 + MTC LTR MaLR 1 420 -1 8 1450 1010 308 67 17 chr5 113482513 113482904 -39054355 + RMER5 LTR ERV1 44 454 -80 8 1450 1056 43 0 14 chr5 113482984 113483127 -39054132 - B1_Mus1 SINE Alu 0 148 8 8 1450 384 324 74 37 chr5 113484355 113484679 -39052580 - MT2A LTR ERVL -7 526 191 8 1450 299 278 98 0 chr5 113484721 113484854 -39052405 - MTEa LTR MaLR -233 146 1 8 1450 403 241 139 82 chr5 113484854 113485060 -39052199 - MLT1C LTR MaLR -249 218 1 8 1450 260 87 0 61 chr5 113485165 113485214 -39052045 + (TATTG)n Simple_repeat Simple_repeat 4 49 0 8 1450 660 276 121 30 chr5 113485371 113485569 -39051690 + B3 SINE B2 1 216 0 8 1450 717 144 29 11 chr5 113486924 113487099 -39050160 + CT-rich Low_complexity Low_complexity 3 180 0 8 1450 247 175 0 0 chr5 113487100 113487140 -39050119 + C-rich Low_complexity Low_complexity 4 43 0 8 1450 287 197 0 13 chr5 113487140 113487156 -39050103 + (CA)n Simple_repeat Simple_repeat 1 16 0 8 1450 189 0 0 0 chr5 113487156 113487177 -39050082 + (TC)n Simple_repeat Simple_repeat 1 21 0 8 1450 287 197 0 13 chr5 113487177 113487237 -39050022 + (CA)n Simple_repeat Simple_repeat 1 59 0 8 1450 199 196 0 0 chr5 113487627 113487673 -39049586 - L3 LINE CR1 -110 4379 4334 8 1450 182 255 20 0 chr5 113488040 113488091 -39049168 + L2b LINE L2 3080 3131 -244 8 1450 228 299 30 0 chr5 113488351 113488418 -39048841 - MER63D DNA AcHobo -679 382 314 8 1450 468 0 0 0 chr5 113488847 113488899 -39048360 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1450 479 319 60 96 chr5 113488925 113489206 -39048053 - B4A SINE B4 -10 282 12 8 1450 1180 81 115 0 chr5 113489296 113489470 -39047789 + L1_Mus1 LINE L1 6371 6564 -3 8 1450 283 320 113 69 chr5 113490059 113490334 -39046925 + RMER12 LTR ERVK 701 987 -335 8 1450 290 347 13 13 chr5 113490335 113490484 -39046775 + (TATATG)n Simple_repeat Simple_repeat 5 153 0 8 1450 375 202 0 0 chr5 113490496 113490585 -39046674 + (TG)n Simple_repeat Simple_repeat 2 90 0 8 1450 349 264 50 4 chr5 113491562 113491693 -39045566 - MIRc SINE MIR -114 162 24 8 1450 204 277 46 0 chr5 113491953 113492018 -39045241 - MIRb SINE MIR -93 175 108 9 1450 262 396 70 15 chr5 113492885 113493085 -39044174 - MER2 DNA MER2_type -120 225 15 9 1450 1540 43 27 0 chr5 113493896 113494082 -39043177 + B2_Mm2 SINE B2 2 192 -3 9 1450 252 0 0 0 chr5 113494232 113494260 -39042999 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1450 204 317 49 0 chr5 113494683 113494765 -39042494 - MIRm SINE MIR -155 121 36 9 1450 235 143 20 20 chr5 113495138 113495199 -39042060 + MIRc SINE MIR 91 151 -125 9 1450 190 100 19 39 chr5 113496379 113496431 -39040828 + (TTA)n Simple_repeat Simple_repeat 1 51 0 9 1450 236 222 51 87 chr5 113496829 113496967 -39040292 + L2c LINE L2 2972 3104 -283 9 1450 183 309 146 31 chr5 113497333 113497463 -39039796 - MIR3 SINE MIR -33 175 31 9 1450 210 358 22 34 chr5 113498077 113498205 -39039054 + MIR SINE MIR 37 160 -102 9 1450 182 227 45 0 chr5 113498541 113498585 -39038674 - MIR SINE MIR -60 148 103 9 1450 191 114 0 28 chr5 113499046 113499082 -39038177 + (CCCA)n Simple_repeat Simple_repeat 3 37 0 9 1450 2729 115 30 64 chr5 113499082 113499518 -39037741 + MTC LTR MaLR 1 421 0 9 1450 3666 55 6 0 chr5 113499525 113500000 -39037259 + L1_Mus3 LINE L1 5939 6416 -222 9 1450 1586 50 9 5 chr5 113500000 113500221 -39037038 + L1_Mus3 LINE L1 6417 6638 0 1 1450 605 265 102 5 chr5 113500280 113500466 -39036793 + ID_B1 SINE B4 15 218 -6 2 1450 1646 281 169 43 chr5 113500467 113500930 -39036329 + Lx8 LINE L1 6406 6950 -523 3 1450 324 0 0 0 chr5 113500930 113500966 -39036293 + (CCA)n Simple_repeat Simple_repeat 2 37 0 4 1450 1646 281 169 43 chr5 113500966 113501265 -39035994 + Lx8 LINE L1 6951 7264 -209 3 1450 845 262 164 30 chr5 113501271 113501309 -39035950 + MTD LTR MaLR 5 40 -379 5 1450 1020 138 189 11 chr5 113501309 113501500 -39035759 + URR1B DNA MER1_type 1 225 0 6 1450 845 262 164 30 chr5 113501500 113501827 -39035432 + MTD LTR MaLR 41 419 0 5 1450 314 218 13 0 chr5 113501830 113501908 -39035351 + RCHARR1 DNA MER1_type 742 820 -154 7 1450 293 46 14 84 chr5 113502257 113502328 -39034931 + (TTTG)n Simple_repeat Simple_repeat 2 67 0 8 1450 224 342 61 0 chr5 113502508 113502622 -39034637 + L2b LINE L2 3254 3374 -1 9 1450 234 0 0 0 chr5 113503045 113503071 -39034188 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1450 267 252 66 28 chr5 113503191 113503297 -39033962 - MER20B DNA MER1_type -50 733 624 1 1450 1119 235 12 10 chr5 113504152 113504653 -39032606 + (TGGA)n Simple_repeat Simple_repeat 1 502 0 1 1450 182 344 0 0 chr5 113505298 113505359 -39031900 + L2b LINE L2 3031 3091 -284 1 1450 219 328 0 0 chr5 113505840 113505901 -39031358 + G-rich Low_complexity Low_complexity 2 62 0 1 1450 336 156 33 0 chr5 113505904 113505994 -39031265 + GA-rich Low_complexity Low_complexity 2 94 0 1 1450 203 105 26 26 chr5 113506033 113506072 -39031187 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1450 217 198 18 28 chr5 113506101 113506210 -39031049 + GA-rich Low_complexity Low_complexity 1 108 0 1 1450 856 159 8 0 chr5 113506216 113506348 -39030911 - B1_Mur3 SINE Alu -12 137 5 1 1450 289 311 19 10 chr5 113506367 113506471 -39030788 - PB1D10 SINE Alu -8 109 5 1 1450 273 163 0 0 chr5 113507328 113507377 -39029882 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1450 1208 188 14 14 chr5 113507796 113508012 -39029247 + B3 SINE B2 1 216 0 2 1451 1213 187 10 0 chr5 113508375 113508578 -39028681 - B3 SINE B2 -10 206 2 2 1451 184 226 0 36 chr5 113508604 113508659 -39028600 + L2b LINE L2 2964 3016 -359 2 1451 238 26 51 0 chr5 113509290 113509329 -39027930 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2 1451 201 283 0 16 chr5 113509690 113509751 -39027508 - L2b LINE L2 -6 3369 3310 2 1451 469 270 228 17 chr5 113511051 113511208 -39026051 - B4A SINE B4 0 292 97 2 1451 1036 118 0 0 chr5 113511208 113511344 -39025915 - B1_Mus1 SINE Alu -12 136 1 2 1451 469 270 228 17 chr5 113511344 113511427 -39025832 - B4A SINE B4 -196 96 1 2 1451 367 328 62 106 chr5 113511454 113511795 -39025464 - ORR1E LTR MaLR -16 343 18 2 1451 294 259 179 36 chr5 113511820 113511988 -39025271 + ID_B1 SINE B4 12 203 -21 2 1451 1116 124 6 6 chr5 113512369 113512547 -39024712 + MTC LTR MaLR 33 210 -211 3 1451 1454 51 11 0 chr5 113512547 113512724 -39024535 + B2_Mm1t SINE B2 1 179 -14 3 1451 429 81 0 10 chr5 113512752 113512858 -39024401 + B2_Mm2 SINE B2 47 187 -8 3 1451 363 96 0 0 chr5 113512861 113512913 -39024346 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 3 1451 1289 149 19 5 chr5 113512913 113513128 -39024131 + MTC LTR MaLR 196 413 -8 3 1451 520 271 15 15 chr5 113513162 113513280 -39023979 + MTE2b LTR MaLR 1 118 -261 3 1451 264 311 8 109 chr5 113513280 113513395 -39023864 + MTE2b LTR MaLR 1 103 -276 3 1451 1792 168 36 51 chr5 113513395 113513843 -39023416 + ORR1B1 LTR MaLR 1 393 -1 3 1451 731 231 106 55 chr5 113513843 113514094 -39023165 + MTE2a LTR MaLR 115 378 -1 3 1451 725 289 86 29 chr5 113514114 113514456 -39022803 + MT2A LTR ERVL 184 546 -8 3 1451 660 282 162 28 chr5 113514585 113514942 -39022317 + MTD LTR MaLR 1 405 -14 3 1451 504 0 0 0 chr5 113516533 113516589 -39020670 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1451 1403 32 27 5 chr5 113516762 113516950 -39020309 - MTB LTR MaLR 0 400 209 4 1451 882 122 29 0 chr5 113516935 113517074 -39020185 + MTA_Mm LTR MaLR 254 396 0 4 1451 527 277 40 145 chr5 113517963 113518212 -39019047 - ID_B1 SINE B4 0 224 2 4 1451 642 184 63 44 chr5 113520824 113520983 -39016276 + RSINE1 SINE B4 3 164 -1 4 1451 262 185 19 0 chr5 113521570 113521624 -39015635 - MIR SINE MIR -66 142 88 4 1451 1166 75 0 14 chr5 113522523 113522671 -39014588 + B1_Mus2 SINE Alu 2 147 0 4 1451 235 267 0 48 chr5 113522726 113522789 -39014470 + B1F2 SINE Alu 1 60 -89 4 1451 215 278 0 0 chr5 113523744 113523798 -39013461 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1451 734 245 167 0 chr5 113523863 113524055 -39013204 - B4A SINE B4 -68 224 1 4 1451 1264 108 11 0 chr5 113524123 113524299 -39012960 + B2_Mm1t SINE B2 2 179 -14 4 1451 402 259 59 42 chr5 113524303 113524429 -39012830 - B1F2 SINE Alu -20 129 3 5 1451 235 291 173 36 chr5 113524429 113524463 -39012796 - B4 SINE B4 -200 92 40 5 1451 183 364 0 0 chr5 113526402 113526468 -39010791 - MIR SINE MIR -69 139 74 5 1451 302 296 8 17 chr5 113527128 113527245 -39010014 + PB1D10 SINE Alu 1 116 -1 5 1451 221 222 32 0 chr5 113527246 113527309 -39009950 + (CAGA)n Simple_repeat Simple_repeat 4 68 0 5 1451 317 263 0 11 chr5 113527675 113527710 -39009549 + (CAGT)n Simple_repeat Simple_repeat 1 34 0 5 1451 285 118 0 0 chr5 113527710 113527761 -39009498 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 5 1451 553 227 13 5 chr5 113527761 113528083 -39009176 + (CAGT)n Simple_repeat Simple_repeat 1 324 0 5 1451 252 0 0 0 chr5 113528090 113528118 -39009141 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 5 1451 248 120 0 20 chr5 113528123 113528174 -39009085 + (CAGT)n Simple_repeat Simple_repeat 1 50 0 5 1451 264 234 12 6 chr5 113528216 113528384 -39008875 + (CTCA)n Simple_repeat Simple_repeat 2 170 0 6 1451 239 247 39 49 chr5 113528991 113529093 -39008166 + MIR SINE MIR 34 134 -74 6 1451 210 105 0 0 chr5 113529386 113529424 -39007835 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1451 1415 118 147 12 chr5 113530074 113530415 -39006844 + MTC LTR MaLR 1 388 -12 6 1451 699 229 3 0 chr5 113532009 113532369 -39004890 + (CA)n Simple_repeat Simple_repeat 1 361 0 6 1451 700 235 0 45 chr5 113533206 113533362 -39003897 + B1F SINE Alu 1 149 0 6 1451 210 71 0 0 chr5 113533368 113533396 -39003863 + (A)n Simple_repeat Simple_repeat 1 28 0 6 1451 182 346 40 80 chr5 113533421 113533597 -39003662 - MIRm SINE MIR -46 230 62 6 1451 306 208 36 90 chr5 113533722 113533833 -39003426 + MT2B LTR ERVL 153 257 -344 6 1451 220 310 105 99 chr5 113533726 113533744 -39003515 + B4A SINE B4 74 147 -145 6 1451 663 211 38 0 chr5 113533744 113533877 -39003382 + B1_Mus1 SINE Alu 10 147 -1 7 1451 220 310 105 99 chr5 113533877 113533898 -39003361 + B4A SINE B4 148 246 -46 6 1451 375 141 0 0 chr5 113533905 113533969 -39003290 + (GGGA)n Simple_repeat Simple_repeat 4 67 0 7 1451 750 176 157 4 chr5 113534646 113534899 -39002360 + MTEa LTR MaLR 18 379 0 7 1451 644 189 27 9 chr5 113535117 113535338 -39001921 + (CATATA)n Simple_repeat Simple_repeat 1 225 0 7 1451 660 185 9 18 chr5 113535345 113535566 -39001693 + (CATA)n Simple_repeat Simple_repeat 1 218 0 7 1451 272 222 32 0 chr5 113535570 113535633 -39001626 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 7 1451 291 387 6 34 chr5 113535949 113536128 -39001131 - MIRb SINE MIR -72 196 23 7 1451 195 129 0 0 chr5 113536255 113536286 -39000973 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 7 1451 262 228 226 10 chr5 113536678 113536780 -39000479 + MIRb SINE MIR 28 151 -117 7 1451 630 72 137 51 chr5 113537051 113537168 -39000091 + B1_Mus1 SINE Alu 22 148 0 7 1451 531 209 78 31 chr5 113537739 113537888 -38999371 + B3A SINE B2 53 198 0 8 1451 1182 75 0 0 chr5 113537888 113538034 -38999225 + B1_Mus2 SINE Alu 2 147 0 8 1451 393 149 0 0 chr5 113538071 113538138 -38999121 + (GGA)n Simple_repeat Simple_repeat 3 69 0 8 1451 796 239 69 0 chr5 113538146 113538334 -38998925 - MTE2a LTR MaLR -56 323 123 8 1451 287 143 338 0 chr5 113538677 113538754 -38998505 + Lx3B LINE L1 6863 6965 -8 8 1451 360 0 0 0 chr5 113538754 113538794 -38998465 + (TAA)n Simple_repeat Simple_repeat 2 41 0 8 1451 1024 189 20 10 chr5 113538794 113538997 -38998262 - B3 SINE B2 -10 206 2 8 1451 575 269 11 33 chr5 113539422 113539603 -38997656 + B3A SINE B2 6 182 -16 8 1451 200 186 0 33 chr5 113539615 113539737 -38997522 + (CA)n Simple_repeat Simple_repeat 2 119 0 8 1451 279 130 0 0 chr5 113539736 113539790 -38997469 + (TC)n Simple_repeat Simple_repeat 2 55 0 8 1451 299 327 3 80 chr5 113540180 113540493 -38996766 + C-rich Low_complexity Low_complexity 1 288 0 9 1451 417 198 0 0 chr5 113540862 113540958 -38996301 + (CA)n Simple_repeat Simple_repeat 1 96 0 9 1451 1675 31 5 0 chr5 113541014 113541205 -38996054 + B2_Mm1a SINE B2 2 193 0 9 1451 394 265 0 20 chr5 113541851 113541951 -38995308 + MIRc SINE MIR 35 132 -136 9 1451 479 276 0 8 chr5 113542541 113542805 -38994454 + (CA)n Simple_repeat Simple_repeat 1 261 0 9 1451 212 234 0 25 chr5 113542812 113542891 -38994368 + (CATA)n Simple_repeat Simple_repeat 3 79 0 9 1451 202 354 113 10 chr5 113542938 113543035 -38994224 + MIR SINE MIR 38 144 -64 9 1451 2421 122 10 60 chr5 113543908 113544325 -38992934 + MTB_Mm LTR MaLR 12 407 0 9 1451 301 285 28 31 chr5 113544325 113544455 -38992804 - MIRb SINE MIR -93 175 37 9 1451 485 182 68 11 chr5 113544992 113545142 -38992117 - MTC LTR MaLR -147 232 72 9 1451 275 270 231 9 chr5 113545272 113545538 -38991721 + Lx8 LINE L1 6786 7115 -358 1 1451 312 188 0 0 chr5 113545568 113545632 -38991627 + GA-rich Low_complexity Low_complexity 1 64 0 1 1451 1248 41 0 0 chr5 113545737 113545882 -38991377 + B1_Mm SINE Alu 1 145 -2 1 1451 189 0 0 0 chr5 113546685 113546706 -38990553 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1451 207 0 0 0 chr5 113546826 113546849 -38990410 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1451 326 267 167 0 chr5 113546849 113546969 -38990290 - B1F SINE Alu -9 140 1 1 1451 182 253 37 25 chr5 113547176 113547257 -38990002 + L2 LINE L2 2833 2914 -505 1 1451 294 316 0 13 chr5 113547911 113547988 -38989271 + MLT1I LTR MaLR 92 167 -244 1 1451 303 225 14 14 chr5 113548088 113548160 -38989099 + MLT1I LTR MaLR 340 411 0 1 1451 202 128 64 0 chr5 113548291 113548338 -38988921 + T-rich Low_complexity Low_complexity 2 51 0 1 1451 282 338 21 29 chr5 113548742 113548882 -38988377 + MIR SINE MIR 23 161 -101 1 1451 185 94 0 30 chr5 113549571 113549604 -38987655 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 1 1451 563 184 4 39 chr5 113549604 113549846 -38987413 + GA-rich Low_complexity Low_complexity 1 233 0 1 1451 446 210 10 39 chr5 113550755 113550859 -38986400 - PB1D10 SINE Alu -7 110 10 1 1451 180 0 0 0 chr5 113551941 113551961 -38985298 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1451 1661 310 102 48 chr5 113552062 113553178 -38984081 - L1_Mur3 LINE L1 -452 5428 4253 1 1451 368 161 0 16 chr5 113553784 113553847 -38983412 + B1_Mus2 SINE Alu 65 126 -21 1 1451 907 197 101 0 chr5 113553993 113554181 -38983078 - B3 SINE B2 -8 208 2 1 1451 280 313 132 55 chr5 113554869 113555104 -38982155 - MTEb LTR MaLR 0 379 124 1 1451 222 37 0 0 chr5 113555104 113555131 -38982128 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1451 280 313 132 55 chr5 113555131 113555152 -38982107 - MTEb LTR MaLR -256 123 103 1 1451 651 88 0 0 chr5 113555315 113555406 -38981853 + (TTCA)n Simple_repeat Simple_repeat 2 92 0 1 1451 371 275 0 76 chr5 113555476 113555488 -38981771 + ID SINE ID 70 72 -152 1 1451 464 235 0 55 chr5 113555488 113555616 -38981643 + B1F2 SINE Alu 1 118 -2 1 1451 665 68 0 21 chr5 113555951 113556061 -38981198 - B2_Mm2 SINE B2 -97 101 2 1 1451 191 229 197 14 chr5 113556929 113557000 -38980259 - MIRc SINE MIR -125 143 60 1 1451 198 0 0 0 chr5 113557447 113557469 -38979790 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1451 441 0 0 0 chr5 113557769 113557818 -38979441 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1451 183 208 21 0 chr5 113557886 113557934 -38979325 + MIR SINE MIR 71 119 -89 1 1451 440 215 11 11 chr5 113558243 113558337 -38978922 + PB1D7 SINE Alu 1 94 -26 1 1451 553 285 105 14 chr5 113558609 113558891 -38978368 + MTEb LTR MaLR 1 364 -15 1 1451 258 192 0 0 chr5 113559432 113559484 -38977775 + GA-rich Low_complexity Low_complexity 1 52 0 1 1451 1116 133 0 0 chr5 113559484 113559664 -38977595 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1451 704 258 31 54 chr5 113559678 113559927 -38977332 - ID_B1 SINE B4 -44 248 4 1 1451 606 312 139 18 chr5 113560280 113560619 -38976640 - MLT1F1 LTR MaLR 0 560 179 1 1451 459 254 118 15 chr5 113561091 113561227 -38976032 - ORR1E LTR MaLR -179 180 31 1 1451 259 351 43 17 chr5 113561359 113561475 -38975784 - ID_B1 SINE B4 -103 121 3 1 1451 449 331 77 8 chr5 113561480 113561688 -38975571 - ID_B1 SINE B4 0 224 3 1 1451 304 323 32 0 chr5 113563726 113563819 -38973440 + MER2B DNA MER2_type 219 314 -22 1 1451 495 224 0 0 chr5 113563979 113564153 -38973106 + (CA)n Simple_repeat Simple_repeat 2 175 0 1 1451 566 218 6 0 chr5 113564170 113564514 -38972745 + (CA)n Simple_repeat Simple_repeat 1 346 0 1 1451 209 330 25 85 chr5 113564974 113565158 -38972101 - MIR SINE MIR -50 226 44 1 1451 205 339 119 40 chr5 113565204 113565330 -38971929 - MIRc SINE MIR -26 242 107 1 1451 186 71 0 0 chr5 113567666 113567694 -38969565 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1451 194 265 45 71 chr5 113568774 113568923 -38968336 - MIRm SINE MIR -23 253 104 1 1451 1073 137 42 37 chr5 113569954 113570144 -38967115 + B2_Mm2 SINE B2 1 191 -4 1 1451 1181 109 0 0 chr5 113570217 113570392 -38966867 + B2_Mm2 SINE B2 1 175 -20 1 1451 241 391 30 35 chr5 113570599 113570798 -38966461 - MER96B DNA hAT -219 198 1 1 1451 272 290 76 53 chr5 113571478 113571609 -38965650 - MIRb SINE MIR -70 198 65 1 1451 208 143 0 0 chr5 113571984 113572019 -38965240 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1 1451 183 80 0 0 chr5 113572132 113572157 -38965102 + (CCCCCA)n Simple_repeat Simple_repeat 6 30 0 1 1451 360 203 0 14 chr5 113573273 113573343 -38963916 + ID_B1 SINE B4 148 216 -8 1 1451 1221 62 17 17 chr5 113573605 113573786 -38963473 - B2_Mm2 SINE B2 0 195 15 1 1451 183 344 80 60 chr5 113573978 113574179 -38963080 + L2c LINE L2 2968 3172 -215 1 1451 229 162 139 56 chr5 113575407 113575479 -38961780 + MIRc SINE MIR 85 162 -106 1 1451 585 0 0 0 chr5 113575697 113575762 -38961497 + (CAG)n Simple_repeat Simple_repeat 2 66 0 1 1451 303 96 0 0 chr5 113575836 113575888 -38961371 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1451 350 198 0 23 chr5 113575965 113576136 -38961123 + (CA)n Simple_repeat Simple_repeat 2 168 0 1 1451 282 244 0 0 chr5 113576148 113576378 -38960881 + (CA)n Simple_repeat Simple_repeat 1 230 0 1 1451 310 83 0 77 chr5 113576461 113576513 -38960746 + HAL1-3A_ME LINE L1 1974 2021 -837 1 1451 278 261 14 0 chr5 113577145 113577214 -38960045 - MER58C DNA MER1_type -11 204 135 1 1451 192 27 53 26 chr5 113577720 113577758 -38959501 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 1 1451 340 321 64 15 chr5 113578702 113578868 -38958391 + MTD LTR MaLR 207 403 -16 1 1451 596 208 2 8 chr5 113579056 113579660 -38957599 + (TG)n Simple_repeat Simple_repeat 1 599 0 1 1451 538 212 37 45 chr5 113579702 113579856 -38957403 - B4A SINE B4 0 292 131 1 1451 230 342 0 13 chr5 113581161 113581238 -38956021 - L2b LINE L2 -2 3373 3298 1 1451 217 333 54 22 chr5 113582689 113582781 -38954478 + MIR SINE MIR 24 118 -144 1 1451 195 42 0 0 chr5 113582849 113582873 -38954386 + (CACAC)n Simple_repeat Simple_repeat 3 26 0 1 1451 243 250 60 48 chr5 113582897 113582981 -38954278 + MLT1B LTR MaLR 61 145 -245 1 1451 210 143 0 0 chr5 113583019 113583054 -38954205 - B1_Mus1 SINE Alu -87 61 27 1 1451 360 0 0 0 chr5 113583071 113583111 -38954148 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1451 584 128 0 89 chr5 113583728 113583840 -38953419 - B1_Mur4 SINE Alu -4 146 45 1 1451 210 195 0 24 chr5 113584476 113584518 -38952741 - MIRb SINE MIR 0 268 228 1 1451 308 338 98 40 chr5 113585965 113586190 -38951069 - MIRb SINE MIR -9 259 22 1 1451 393 288 123 0 chr5 113586553 113586699 -38950560 + MIR SINE MIR 44 207 -55 1 1451 212 280 129 10 chr5 113587291 113587392 -38949867 - MIRc SINE MIR -120 148 36 1 1451 286 298 25 42 chr5 113587531 113587650 -38949609 + MIRc SINE MIR 49 165 -103 1 1451 230 0 0 32 chr5 113587942 113587973 -38949286 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 1 1451 292 275 25 0 chr5 113588281 113588361 -38948898 - ID4 SINE ID 0 83 2 1 1451 398 287 41 27 chr5 113588372 113588519 -38948740 - ID_B1 SINE B4 -1 223 75 1 1451 462 252 14 82 chr5 113588889 113589036 -38948223 - MER20 DNA MER1_type -57 162 26 1 1451 235 372 15 44 chr5 113589103 113589238 -38948021 + YREP_Mm Unknown Unknown 159 289 -1523 1 1451 728 222 77 46 chr5 113589145 113589339 -38947920 - ID_B1 SINE B4 -23 201 2 1 1451 460 290 101 32 chr5 113589353 113589542 -38947717 - B3 SINE B2 -7 209 8 1 1451 291 336 156 38 chr5 113589617 113589963 -38947296 + L1MA9 LINE L1 5624 6010 -302 1 1451 366 240 90 0 chr5 113590962 113591062 -38946197 + PB1D7 SINE Alu 1 109 -11 1 1451 618 51 0 0 chr5 113591062 113591140 -38946119 + (GGAAA)n Simple_repeat Simple_repeat 3 80 0 1 1451 249 33 0 0 chr5 113591225 113591255 -38946004 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1 1451 231 36 0 0 chr5 113591830 113591858 -38945401 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 1 1451 307 312 11 34 chr5 113592600 113592779 -38944480 + G-rich Low_complexity Low_complexity 2 176 0 1 1451 357 246 45 0 chr5 113593141 113593251 -38944008 - MIRb SINE MIR -112 156 42 1 1451 25 0 0 0 chr5 113593724 113593749 -38943510 + AT_rich Low_complexity Low_complexity 1 25 0 1 1451 264 30 0 0 chr5 113594367 113594400 -38942859 + (ACTG)n Simple_repeat Simple_repeat 1 33 0 1 1451 266 303 159 29 chr5 113595069 113595300 -38941959 + MLT1A0 LTR MaLR 77 361 -13 1 1451 239 342 102 34 chr5 113595337 113595543 -38941716 + MLT1C LTR MaLR 215 434 -33 1 1451 356 262 37 37 chr5 113596777 113596884 -38940375 + RSINE1 SINE B4 3 109 -56 1 1451 286 254 81 16 chr5 113597466 113597590 -38939669 + L1MB5 LINE L1 5767 5898 -276 1 1451 826 129 70 21 chr5 113597773 113597915 -38939344 + B1_Mur4 SINE Alu 1 149 -1 1 1451 382 280 93 9 chr5 113597969 113598072 -38939187 + B1F SINE Alu 1 112 -37 1 1451 284 244 37 0 chr5 113598072 113598154 -38939105 + B4A SINE B4 2 86 -206 1 1451 258 81 0 0 chr5 113598392 113598429 -38938830 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1451 772 254 2 8 chr5 113599129 113599297 -38937962 + B3A SINE B2 1 158 -35 1 1451 268 297 30 0 chr5 113599691 113599792 -38937467 + MIRb SINE MIR 49 152 -116 1 1451 186 103 0 0 chr5 113599891 113599920 -38937339 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1451 631 200 8 16 chr5 113599935 113600057 -38937202 + MT2A LTR ERVL 1 121 -412 2 1451 674 219 27 51 chr5 113600033 113600314 -38936945 + MT2A LTR ERVL 323 567 -34 2 1451 3483 57 0 0 chr5 113600325 113600732 -38936527 + MTB_Mm LTR MaLR 1 407 0 2 1451 233 255 21 31 chr5 113600932 113601029 -38936230 + C-rich Low_complexity Low_complexity 5 100 0 2 1451 318 98 0 0 chr5 113601581 113601632 -38935627 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1451 309 336 83 15 chr5 113601644 113601777 -38935482 + MIRb SINE MIR 9 150 -118 2 1451 213 314 0 0 chr5 113601871 113601922 -38935337 + ID SINE ID 9 59 -165 2 1451 332 184 28 55 chr5 113602096 113602205 -38935054 + (CAGA)n Simple_repeat Simple_repeat 1 106 0 2 1451 182 306 0 31 chr5 113602278 113602342 -38934917 + MIR SINE MIR 89 150 -58 2 1451 221 83 28 0 chr5 113602347 113602383 -38934876 + (GGGAGA)n Simple_repeat Simple_repeat 2 38 0 2 1451 351 0 0 0 chr5 113602787 113602826 -38934433 + (TC)n Simple_repeat Simple_repeat 1 39 0 2 1451 234 0 0 0 chr5 113602826 113602851 -38934408 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1451 1908 192 85 85 chr5 113603028 113603556 -38933703 - RLTR11A LTR ERVK 0 528 1 2 1451 321 241 34 62 chr5 113603597 113603717 -38933542 - MIRc SINE MIR -114 154 29 2 1451 990 52 97 0 chr5 113604916 113605050 -38932209 - B1_Mus1 SINE Alu -1 147 1 2 1451 398 340 107 70 chr5 113605426 113605799 -38931460 + L1M4 LINE L1 5017 5403 -743 2 1451 227 154 0 0 chr5 113605824 113605863 -38931396 + ID_B1 SINE B4 184 222 -2 2 1451 258 105 0 0 chr5 113606718 113606756 -38930503 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1451 283 234 12 21 chr5 113606789 113607135 -38930124 + (TG)n Simple_repeat Simple_repeat 1 343 0 2 1451 242 221 0 29 chr5 113607165 113607235 -38930024 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1451 214 333 92 20 chr5 113607357 113607455 -38929804 - RSINE1 SINE B4 -28 137 33 2 1451 375 331 19 0 chr5 113607879 113608033 -38929226 + (TG)n Simple_repeat Simple_repeat 2 158 0 2 1451 1374 92 11 0 chr5 113608090 113608274 -38928985 - B2_Mm1t SINE B2 -5 188 3 2 1451 1180 41 7 20 chr5 113608274 113608423 -38928836 - B1_Mus1 SINE Alu -1 147 1 2 1451 27 0 0 0 chr5 113608799 113608826 -38928433 + GC_rich Low_complexity Low_complexity 1 27 0 2 1451 226 336 70 31 chr5 113610042 113610171 -38927088 + LTR16C LTR ERVL 208 341 -148 2 1451 257 211 53 0 chr5 113610575 113610651 -38926608 + (CTGGGG)n Simple_repeat Simple_repeat 2 81 0 2 1451 1082 107 49 33 chr5 113610712 113610896 -38926363 + B2_Mm2 SINE B2 9 195 0 2 1451 292 215 0 15 chr5 113614010 113614076 -38923183 - MLT1A1 LTR MaLR 0 408 344 2 1451 1186 62 7 0 chr5 113614078 113614224 -38923035 + B1_Mus1 SINE Alu 2 148 0 2 1451 1755 193 146 62 chr5 113614277 113614764 -38922495 - RLTR11A LTR ERVK 0 528 1 2 1451 893 262 50 89 chr5 113614779 113614861 -38922398 - B4A SINE B4 0 292 216 2 1451 1252 54 0 0 chr5 113614861 113615008 -38922251 + B1_Mm SINE Alu 1 147 0 2 1451 893 262 50 89 chr5 113615008 113615227 -38922032 - B4A SINE B4 -77 215 3 2 1451 596 259 85 20 chr5 113615803 113616004 -38921255 + ID_B1 SINE B4 2 215 -9 2 1451 579 268 0 0 chr5 113616125 113616304 -38920955 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1451 264 257 63 18 chr5 113616391 113616502 -38920757 + L1M5 LINE L1 5703 5818 -344 2 1451 393 253 11 0 chr5 113616993 113617080 -38920179 - PB1D9 SINE Alu 0 120 33 2 1451 242 305 51 51 chr5 113617580 113617718 -38919541 + MIR3 SINE MIR 3 140 -68 2 1451 279 266 25 76 chr5 113617685 113617803 -38919456 + MIRc SINE MIR 112 223 -45 2 1451 420 173 0 0 chr5 113618238 113618313 -38918946 + RSINE1 SINE B4 3 77 -88 2 1451 336 283 11 0 chr5 113618609 113618701 -38918558 + ID_B1 SINE B4 110 202 -22 2 1451 256 298 8 8 chr5 113618766 113618891 -38918368 + (TG)n Simple_repeat Simple_repeat 2 126 0 2 1451 398 211 9 0 chr5 113618903 113619017 -38918242 + (TG)n Simple_repeat Simple_repeat 1 115 0 2 1451 467 217 7 0 chr5 113619074 113619226 -38918033 + (TG)n Simple_repeat Simple_repeat 1 153 0 2 1451 217 301 40 61 chr5 113621633 113621732 -38915527 - BC1_Mm scRNA scRNA -54 98 2 2 1451 488 231 0 58 chr5 113622053 113622191 -38915068 - ID_B1 SINE B4 0 224 95 2 1451 189 133 0 0 chr5 113623125 113623155 -38914104 - L2a LINE L2 -13 3413 3384 2 1451 219 175 0 0 chr5 113623210 113623267 -38913992 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1451 206 222 0 0 chr5 113623289 113623334 -38913925 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1451 342 255 36 73 chr5 113623492 113623602 -38913657 + PB1D10 SINE Alu 1 106 -11 2 1451 252 0 0 0 chr5 113623602 113623630 -38913629 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2 1451 234 0 0 0 chr5 113624433 113624459 -38912800 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1451 189 0 0 0 chr5 113624853 113624874 -38912385 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1451 244 208 52 65 chr5 113625518 113625595 -38911664 + ID2 SINE ID 2 77 -6 2 1451 394 275 31 8 chr5 113625624 113625755 -38911504 + B1F1 SINE Alu 3 133 -15 2 1451 245 306 102 0 chr5 113625834 113625932 -38911327 - Tigger5 DNA MER2_type -2216 190 83 2 1451 314 273 13 0 chr5 113626772 113626849 -38910410 + MER58A DNA MER1_type 7 84 -140 2 1451 344 285 291 0 chr5 113627110 113627282 -38909977 - ID_B1 SINE B4 -1 223 2 2 1451 518 266 30 37 chr5 113627317 113627481 -38909778 - RSINE1 SINE B4 0 165 3 2 1451 458 225 25 75 chr5 113627660 113627780 -38909479 - PB1D7 SINE Alu 0 120 7 2 1451 259 304 139 31 chr5 113627667 113627796 -38909463 - B4A SINE B4 -72 220 78 2 1451 21 0 0 0 chr5 113627797 113627818 -38909441 + AT_rich Low_complexity Low_complexity 1 21 0 2 1451 1189 78 0 53 chr5 113629399 113629543 -38907716 + B2_Mm2 SINE B2 14 155 -40 2 1451 204 40 0 0 chr5 113629543 113629568 -38907691 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1451 1189 78 0 53 chr5 113629568 113629613 -38907646 + B2_Mm2 SINE B2 156 193 -2 2 1451 285 128 0 0 chr5 113630287 113630334 -38906925 + (GGGTG)n Simple_repeat Simple_repeat 2 48 0 2 1451 4114 147 218 58 chr5 113630826 113631421 -38905838 - MTC-int LTR MaLR -6 1252 534 2 1451 1123 82 0 7 chr5 113631421 113631568 -38905691 + B1_Mm SINE Alu 2 147 0 2 1451 4114 147 218 58 chr5 113631568 113632049 -38905210 - MTC-int LTR MaLR -725 533 3 2 1451 2452 157 11 63 chr5 113632051 113632494 -38904765 - MTC LTR MaLR 0 421 2 2 1451 223 347 0 0 chr5 113632974 113633046 -38904213 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1451 635 295 130 15 chr5 113633050 113633312 -38903947 - B4A SINE B4 0 292 1 2 1451 256 357 83 13 chr5 113634066 113634222 -38903037 + Tigger5 DNA MER2_type 1 167 -2239 2 1451 1394 228 109 28 chr5 113635566 113636045 -38901214 + RMER4B LTR ERVK 18 466 0 2 1451 2384 102 70 5 chr5 113636561 113636945 -38900314 + MTC LTR MaLR 5 413 -8 2 1451 247 196 52 8 chr5 113637444 113637578 -38899681 + (CA)n Simple_repeat Simple_repeat 1 140 0 2 1451 205 156 0 0 chr5 113639343 113639375 -38897884 + C-rich Low_complexity Low_complexity 2 33 0 2 1452 216 303 26 0 chr5 113640124 113640200 -38897059 + ID4_ SINE ID 2 79 -4 2 1452 398 266 55 41 chr5 113640159 113640184 -38897075 + B1F SINE Alu 2 148 -1 2 1452 444 269 0 42 chr5 113640184 113640304 -38896955 + ID_B1 SINE B4 109 223 -1 2 1452 488 252 0 5 chr5 113640358 113640806 -38896453 + (TG)n Simple_repeat Simple_repeat 1 445 0 2 1452 314 205 0 60 chr5 113640810 113640937 -38896322 - B4 SINE B4 0 292 176 2 1452 183 178 44 0 chr5 113641264 113641309 -38895950 - MIRc SINE MIR -137 131 85 2 1452 811 184 2 6 chr5 113641881 113642390 -38894869 + (TG)n Simple_repeat Simple_repeat 1 506 0 2 1452 219 114 0 0 chr5 113642524 113642559 -38894700 + (TCTG)n Simple_repeat Simple_repeat 1 35 0 2 1452 497 225 257 0 chr5 113642839 113643026 -38894233 + B4A SINE B4 46 280 -12 2 1452 183 156 0 0 chr5 113643243 113643275 -38893984 + (CGGA)n Simple_repeat Simple_repeat 2 33 0 2 1452 604 166 40 39 chr5 113643995 113644175 -38893084 + B3 SINE B2 16 193 -2 2 1452 215 231 28 12 chr5 113644201 113644281 -38892978 - MIR SINE MIR -62 146 72 2 1452 189 147 0 0 chr5 113644907 113644941 -38892318 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 2 1452 203 219 0 24 chr5 113645233 113645275 -38891984 + L2b LINE L2 3316 3356 -19 2 1452 496 237 0 26 chr5 113646195 113646312 -38890947 - B1F SINE Alu -30 119 6 2 1452 180 111 0 0 chr5 113646565 113646592 -38890667 + (ATTG)n Simple_repeat Simple_repeat 3 29 0 2 1452 262 260 0 77 chr5 113646655 113646838 -38890421 + (CACCC)n Simple_repeat Simple_repeat 3 171 0 2 1452 191 312 134 0 chr5 113647448 113647560 -38889699 - MIRb SINE MIR -81 187 61 2 1452 213 186 0 0 chr5 113648675 113648718 -38888541 + L2c LINE L2 3096 3138 -249 2 1452 207 0 0 0 chr5 113648723 113648746 -38888513 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 1452 198 189 0 0 chr5 113648895 113648932 -38888327 - MIRm SINE MIR -126 150 114 2 1452 385 227 0 0 chr5 113648937 113649012 -38888247 + RSINE1 SINE B4 3 77 -88 2 1452 225 205 11 57 chr5 113650178 113650266 -38886993 + (CCCG)n Simple_repeat Simple_repeat 4 87 0 2 1452 417 265 59 7 chr5 113650630 113650749 -38886510 - B3A SINE B2 -6 192 74 2 1452 551 115 21 0 chr5 113650760 113650856 -38886403 + Lx2 LINE L1 6900 6997 0 2 1452 3137 77 65 0 chr5 113650862 113651279 -38885980 + L1_Mus1 LINE L1 6124 6567 0 2 1452 1260 41 0 7 chr5 113651745 113651893 -38885366 - B1_Mus1 SINE Alu 0 148 2 2 1452 396 0 0 0 chr5 113652032 113652076 -38885183 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1452 859 199 0 0 chr5 113652411 113652557 -38884702 + B1_Mus2 SINE Alu 2 147 0 2 1452 358 200 86 32 chr5 113653538 113653631 -38883628 - PB1D7 SINE Alu 0 120 23 2 1452 601 221 19 32 chr5 113653578 113653732 -38883527 - ID_B1 SINE B4 -71 153 2 2 1452 927 270 56 53 chr5 113653981 113654084 -38883175 + ORR1E LTR MaLR 2 102 -257 2 1452 968 158 106 69 chr5 113654084 113654301 -38882958 + URR1A DNA MER1_type 2 226 0 3 1452 927 270 56 53 chr5 113654301 113654534 -38882725 + ORR1E LTR MaLR 103 339 -20 2 1452 265 333 46 20 chr5 113655564 113655717 -38881542 - LTR16D LTR ERVL -6 645 489 3 1452 201 338 0 24 chr5 113656416 113656498 -38880761 - MIRc SINE MIR -123 145 66 3 1452 718 103 50 0 chr5 113656583 113656983 -38880276 + (TCTA)n Simple_repeat Simple_repeat 1 420 0 3 1452 387 0 0 0 chr5 113657113 113657156 -38880103 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1452 314 344 69 46 chr5 113657258 113657609 -38879650 + L2a LINE L2 2967 3321 -54 3 1452 594 143 0 0 chr5 113657611 113657702 -38879557 + B2_Mm2 SINE B2 2 92 -103 3 1452 400 195 33 33 chr5 113657843 113657955 -38879304 + (TAGA)n Simple_repeat Simple_repeat 1 115 0 3 1452 2461 50 27 59 chr5 113657955 113658293 -38878966 + ORR1A2 LTR MaLR 1 327 0 3 1452 400 195 33 33 chr5 113658293 113658360 -38878899 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 3 1452 240 100 0 0 chr5 113658432 113658472 -38878787 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1452 1240 61 0 0 chr5 113658478 113658625 -38878634 + B1_Mus1 SINE Alu 1 147 -1 3 1452 193 29 0 56 chr5 113658626 113658662 -38878597 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3 1452 321 306 24 0 chr5 113659081 113659166 -38878093 + RSINE1 SINE B4 2 88 -77 3 1452 344 252 26 80 chr5 113660009 113660160 -38877099 + MLT1A1 LTR MaLR 19 161 -213 3 1452 461 212 138 81 chr5 113660167 113660377 -38876882 + B4 SINE B4 2 223 -69 3 1452 699 228 107 15 chr5 113660364 113660560 -38876699 + B4 SINE B4 65 278 -14 3 1452 462 273 25 68 chr5 113660623 113660784 -38876475 + MLT1A1 LTR MaLR 255 408 0 3 1452 1414 268 35 146 chr5 113660809 113662047 -38875212 + RLTR22_Mur LTR ERVK 1 1441 -407 3 1452 401 81 0 16 chr5 113662047 113662110 -38875149 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1452 1088 248 90 108 chr5 113662110 113662405 -38874854 + RLTR22_Mur LTR ERVK 1338 1611 -237 3 1452 510 46 0 0 chr5 113662463 113662528 -38874731 + (CCCTAA)n Simple_repeat Simple_repeat 6 70 0 3 1452 636 294 38 72 chr5 113662952 113663216 -38874043 - MTEa LTR MaLR -8 371 117 3 1452 438 293 107 0 chr5 113663813 113663953 -38873306 - MER91B DNA Tip100 -28 162 8 3 1452 2891 157 58 20 chr5 113664287 113664839 -38872420 + RMER4B LTR ERVK 1 573 -12 3 1452 195 146 0 0 chr5 113665266 113665307 -38871952 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1452 231 360 34 0 chr5 113665364 113665453 -38871806 + MER91A DNA Tip100 1 92 -104 3 1452 427 264 6 6 chr5 113666315 113666494 -38870765 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1452 372 276 157 10 chr5 113666519 113666717 -38870542 + RMER12 LTR ERVK 767 993 -329 3 1452 267 175 0 0 chr5 113666719 113666776 -38870483 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1452 309 216 0 0 chr5 113666807 113666895 -38870364 + (TGGG)n Simple_repeat Simple_repeat 1 88 0 3 1452 212 291 0 0 chr5 113666898 113666953 -38870306 + (TGGA)n Simple_repeat Simple_repeat 4 58 0 3 1452 393 291 22 22 chr5 113667363 113667500 -38869759 + MIRb SINE MIR 50 186 -82 3 1452 1082 252 57 10 chr5 113667689 113667989 -38869270 + MTE2b LTR MaLR 2 315 -64 3 1452 1347 249 82 3 chr5 113668007 113668337 -38868922 + MTE2a LTR MaLR 24 379 0 3 1452 285 29 0 0 chr5 113669058 113669092 -38868167 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1452 302 172 0 30 chr5 113669151 113669217 -38868042 + ORR1B1 LTR MaLR 1 64 -265 3 1452 2472 35 3 0 chr5 113669217 113669710 -38867549 - RLTR10C LTR ERVK 0 436 10 3 1452 1573 109 27 98 chr5 113669707 113670002 -38867257 + ORR1B1 LTR MaLR 113 386 -8 3 1452 1317 111 16 0 chr5 113670145 113670334 -38866925 - B2_Mm1t SINE B2 -1 192 1 3 1452 242 320 120 0 chr5 113670345 113670445 -38866814 - PB1D7 SINE Alu -8 112 1 3 1452 573 258 99 0 chr5 113670445 113670523 -38866736 - B4A SINE B4 -194 98 6 3 1452 415 140 63 6 chr5 113671165 113671323 -38865936 + (TG)n Simple_repeat Simple_repeat 1 167 0 3 1452 672 127 37 11 chr5 113671361 113671642 -38865617 + (TG)n Simple_repeat Simple_repeat 1 288 0 3 1452 290 303 110 0 chr5 113671915 113672024 -38865235 + ID_B1 SINE B4 92 212 -12 3 1452 818 142 90 0 chr5 113672060 113672194 -38865065 + B1_Mur1 SINE Alu 3 148 -1 3 1452 217 300 28 83 chr5 113674406 113674515 -38862744 + ID_B1 SINE B4 74 176 -48 3 1452 425 204 26 69 chr5 113674419 113674535 -38862724 + PB1D10 SINE Alu 5 115 -2 3 1452 252 0 0 0 chr5 113674717 113674745 -38862514 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1452 335 151 11 161 chr5 113675454 113675541 -38861718 - ID_B1 SINE B4 -12 212 139 3 1452 591 328 110 25 chr5 113675601 113676036 -38861223 - Lx9 LINE L1 -22 7622 7151 3 1452 247 226 0 0 chr5 113676035 113676088 -38861171 + L1_Mur3 LINE L1 3877 3929 -1951 3 1452 1115 112 6 12 chr5 113676088 113676260 -38860999 + B2_Mm1t SINE B2 1 171 -22 3 1452 274 53 0 50 chr5 113676350 113676410 -38860849 + B2_Mm2 SINE B2 138 194 -1 3 1452 332 119 17 0 chr5 113676425 113676484 -38860775 + (AGGGGG)n Simple_repeat Simple_repeat 4 63 0 3 1452 3831 263 100 46 chr5 113676484 113677447 -38859812 + L1_Rod LINE L1 3944 4949 -898 3 1452 2556 128 55 15 chr5 113677447 113677851 -38859408 + MTC LTR MaLR 2 421 0 3 1452 3831 263 100 46 chr5 113677851 113678095 -38859164 + L1_Rod LINE L1 4950 5230 -617 3 1452 288 0 0 0 chr5 113678095 113678127 -38859132 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 3 1452 3831 263 100 46 chr5 113678127 113678517 -38858742 + L1_Rod LINE L1 5231 5628 -219 3 1452 394 206 124 0 chr5 113678570 113678667 -38858592 + L1_Rod LINE L1 5606 5714 -133 3 1452 362 291 94 8 chr5 113678667 113678795 -38858464 - ID_B1 SINE B4 -76 148 10 3 1452 253 272 24 12 chr5 113679500 113679582 -38857677 - MIRc SINE MIR -123 145 63 3 1452 297 292 52 59 chr5 113679670 113679823 -38857436 + B4A SINE B4 1 152 -140 3 1452 847 121 20 20 chr5 113680425 113680577 -38856682 - URR1A DNA MER1_type -2 224 73 3 1452 189 313 226 0 chr5 113681220 113681335 -38855924 + MIRm SINE MIR 6 146 -130 3 1452 270 56 0 0 chr5 113681343 113681379 -38855880 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1452 619 310 54 0 chr5 113681388 113681572 -38855687 - B4A SINE B4 -18 274 81 3 1452 189 0 0 0 chr5 113681596 113681617 -38855642 + (G)n Simple_repeat Simple_repeat 1 21 0 3 1452 273 159 0 0 chr5 113681617 113681661 -38855598 - RSINE1 SINE B4 -44 121 78 3 1452 423 232 20 20 chr5 113681755 113681856 -38855403 - B4A SINE B4 -191 101 1 3 1452 238 246 145 0 chr5 113682298 113682367 -38854892 + L1M4 LINE L1 5440 5518 -660 3 1452 210 273 21 93 chr5 113682373 113682470 -38854789 - B1_Mus2 SINE Alu -57 90 1 3 1452 290 268 46 58 chr5 113682470 113682503 -38854756 - B4 SINE B4 -211 81 50 3 1452 241 152 0 43 chr5 113682533 113682602 -38854657 + (TCTCTG)n Simple_repeat Simple_repeat 1 66 0 3 1452 566 146 40 29 chr5 113682611 113683071 -38854188 + (TG)n Simple_repeat Simple_repeat 1 465 0 3 1452 1345 255 87 31 chr5 113683416 113683863 -38853396 + Lx9 LINE L1 5353 5873 -1771 3 1452 198 0 0 0 chr5 113683863 113683885 -38853374 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 3 1452 906 282 103 31 chr5 113683885 113683982 -38853277 + Lx9 LINE L1 5874 5970 -1674 3 1452 1065 208 43 14 chr5 113684813 113685023 -38852236 + B3 SINE B2 1 216 0 3 1452 658 249 79 17 chr5 113685312 113685523 -38851736 - MTC-int LTR MaLR -674 584 386 3 1452 279 340 86 7 chr5 113685556 113685707 -38851552 - L1M4 LINE L1 -1072 5074 4912 3 1452 438 146 0 0 chr5 113685831 113685927 -38851332 + (TC)n Simple_repeat Simple_repeat 2 97 0 3 1452 528 256 24 0 chr5 113685931 113686056 -38851203 - RSINE1 SINE B4 -31 134 7 3 1452 312 317 99 15 chr5 113686058 113686425 -38850834 - L1M4 LINE L1 -1533 4613 4206 3 1452 2203 63 3 112 chr5 113686449 113686807 -38850452 - ORR1A2 LTR MaLR -8 319 1 3 1452 402 284 41 41 chr5 113686842 113686989 -38850270 - B1F SINE Alu -1 148 2 3 1452 585 234 19 58 chr5 113686859 113687013 -38850246 - ID_B1 SINE B4 -9 215 68 3 1452 684 266 40 5 chr5 113687014 113687214 -38850045 - L1M4 LINE L1 -2290 3856 3650 3 1452 1069 97 0 7 chr5 113687273 113687418 -38849841 + B1_Mm SINE Alu 1 144 -3 3 1452 224 30 30 0 chr5 113687418 113687451 -38849808 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3 1452 268 253 12 12 chr5 113687455 113687535 -38849724 + CT-rich Low_complexity Low_complexity 2 81 0 3 1452 1414 46 17 22 chr5 113688238 113688416 -38848843 + B2_Mm2 SINE B2 4 180 -15 3 1452 203 0 37 0 chr5 113688416 113688443 -38848816 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1452 397 279 74 50 chr5 113688635 113688860 -38848399 + MTE2a LTR MaLR 1 256 -163 3 1452 526 152 0 11 chr5 113688827 113688920 -38848339 + RLTR11A LTR ERVK 271 362 -166 3 1452 354 318 0 0 chr5 113688930 113689056 -38848203 + C-rich Low_complexity Low_complexity 1 126 0 3 1452 549 160 11 0 chr5 113689338 113689432 -38847827 - PB1D10 SINE Alu -3 114 20 3 1452 428 260 59 4 chr5 113689546 113689662 -38847597 + B1F SINE Alu 23 147 0 3 1452 225 327 55 27 chr5 113689872 113689982 -38847277 - Tigger5 DNA MER2_type -2 2404 2292 3 1452 231 316 86 160 chr5 113689976 113690126 -38847133 - Tigger5 DNA MER2_type -2162 244 102 3 1452 1325 73 0 53 chr5 113690126 113690314 -38846945 - B2_Mm2 SINE B2 -16 179 2 3 1452 231 316 86 160 chr5 113690314 113690344 -38846915 - Tigger5 DNA MER2_type -2305 101 79 3 1452 1418 99 16 0 chr5 113690344 113690535 -38846724 + B2_Mm2 SINE B2 2 195 0 3 1452 231 316 86 160 chr5 113690535 113690609 -38846650 - Tigger5 DNA MER2_type -2328 78 8 3 1452 773 291 40 36 chr5 113690738 113691013 -38846246 + B4 SINE B4 4 279 -13 3 1452 226 335 72 43 chr5 113691400 113691609 -38845650 + MLT1H LTR MaLR 169 383 -166 3 1452 996 131 119 0 chr5 113691736 113691896 -38845363 + B2_Mm1t SINE B2 1 179 -14 3 1452 322 111 0 36 chr5 113691928 113691984 -38845275 + B2_Mm2 SINE B2 47 100 -95 3 1452 216 0 0 0 chr5 113692011 113692035 -38845224 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3 1452 629 48 0 23 chr5 113692129 113692215 -38845044 + B2_Mm1t SINE B2 78 161 -32 3 1452 189 0 0 0 chr5 113692219 113692240 -38845019 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3 1452 207 0 0 0 chr5 113693319 113693342 -38843917 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1452 427 264 79 51 chr5 113693359 113693517 -38843742 - B3A SINE B2 -8 208 47 3 1452 222 91 0 0 chr5 113693517 113693550 -38843709 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1452 745 219 40 0 chr5 113693550 113693703 -38843556 - B3A SINE B2 -55 161 4 3 1452 2028 130 19 108 chr5 113693813 113694237 -38843022 + ORR1B1 LTR MaLR 1 386 -8 4 1452 267 175 0 0 chr5 113695859 113695916 -38841343 + (CCCA)n Simple_repeat Simple_repeat 4 60 0 4 1452 535 255 112 20 chr5 113696176 113696372 -38840887 + L1MD1 LINE L1 5841 6054 -188 4 1452 753 189 7 14 chr5 113696382 113696527 -38840732 - B1_Mur3 SINE Alu 0 149 6 4 1452 1962 124 25 9 chr5 113696528 113696845 -38840414 + RLTRETN_Mm LTR ERVK 1 322 0 4 1452 204 40 0 0 chr5 113696994 113697019 -38840240 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1452 365 255 66 0 chr5 113697090 113697196 -38840063 + L1MD1 LINE L1 6118 6230 -12 4 1452 243 307 0 39 chr5 113697950 113698028 -38839231 + MLT1E2 LTR MaLR 23 97 -277 4 1452 262 255 28 47 chr5 113698148 113698255 -38839004 + MLT1E2 LTR MaLR 523 627 0 4 1452 252 0 0 0 chr5 113698318 113698346 -38838913 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1452 396 0 0 0 chr5 113698346 113698389 -38838870 + (GA)n Simple_repeat Simple_repeat 1 44 0 4 1452 437 204 194 0 chr5 113698537 113698645 -38838614 + ID_B1 SINE B4 85 213 -11 4 1452 231 260 35 94 chr5 113698577 113698662 -38838597 + B1_Mus2 SINE Alu 66 145 -2 4 1452 181 131 82 0 chr5 113698697 113698758 -38838501 + GA-rich Low_complexity Low_complexity 3 68 0 4 1452 958 152 198 0 chr5 113699205 113699382 -38837877 - B3 SINE B2 -4 212 1 4 1452 486 319 97 36 chr5 113699439 113699832 -38837427 - L1M4 LINE L1 -2723 3423 3007 4 1452 318 108 46 0 chr5 113699832 113699897 -38837362 + (TATG)n Simple_repeat Simple_repeat 2 69 0 4 1452 514 247 173 12 chr5 113699918 113700100 -38837159 - B3A SINE B2 -7 209 1 4 1452 411 248 51 42 chr5 113700252 113700370 -38836889 + MLT1K LTR MaLR 47 165 -279 4 1452 473 215 54 82 chr5 113700935 113701082 -38836177 + B4 SINE B4 79 221 -71 4 1452 1018 51 0 0 chr5 113700950 113701087 -38836172 + B1_Mus2 SINE Alu 11 147 0 4 1452 38 39 0 0 chr5 113701087 113701139 -38836120 + AT_rich Low_complexity Low_complexity 1 52 0 4 1452 207 0 0 0 chr5 113701354 113701377 -38835882 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1452 919 161 0 0 chr5 113701377 113701513 -38835746 - B1_Mur4 SINE Alu -9 141 6 4 1452 416 234 227 0 chr5 113701517 113701658 -38835601 + MTE2b LTR MaLR 201 373 -6 4 1452 306 263 0 0 chr5 113701860 113701936 -38835323 - RMER30 DNA MER1_type -22 180 105 4 1452 480 283 25 0 chr5 113701936 113702056 -38835203 - B1F SINE Alu -26 123 1 4 1452 471 130 0 0 chr5 113702152 113702229 -38835030 + (TA)n Simple_repeat Simple_repeat 1 77 0 4 1452 640 341 50 13 chr5 113703629 113703932 -38833327 + MLT1K LTR MaLR 225 538 -57 4 1452 489 234 0 43 chr5 113703922 113704038 -38833221 - PB1D10 SINE Alu 0 117 7 4 1452 230 369 40 40 chr5 113705776 113705845 -38831414 - B2_Mm2 SINE B2 -52 164 1 4 1452 389 326 0 0 chr5 113705845 113705940 -38831319 - RSINE1 SINE B4 -69 96 2 4 1452 303 315 35 44 chr5 113706994 113707107 -38830152 - PB1D10 SINE Alu -5 112 1 4 1452 226 106 21 21 chr5 113707116 113707164 -38830095 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1452 616 306 9 92 chr5 113707194 113707421 -38829838 - B4 SINE B4 0 292 85 4 1452 417 123 0 0 chr5 113707427 113707492 -38829767 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1452 389 310 227 5 chr5 113707536 113707734 -38829525 - B4A SINE B4 -7 285 44 4 1452 434 243 80 46 chr5 113708782 113708933 -38828326 - MIRb SINE MIR -76 192 37 4 1452 423 0 0 0 chr5 113709121 113709168 -38828091 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1452 231 241 125 12 chr5 113709647 113709727 -38827532 + MLT1K LTR MaLR 148 236 -359 4 1452 185 262 0 0 chr5 113710086 113710128 -38827131 + MIRc SINE MIR 119 160 -108 4 1452 263 336 9 26 chr5 113710122 113710238 -38827021 + MIRb SINE MIR 129 242 -26 4 1452 405 58 0 0 chr5 113710977 113711029 -38826230 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1452 1049 101 0 63 chr5 113711030 113711188 -38826071 - B1_Mus1 SINE Alu 0 148 1 4 1452 528 193 164 41 chr5 113711224 113711370 -38825889 - RSINE1 SINE B4 0 165 2 4 1452 867 118 0 0 chr5 113712579 113712714 -38824545 + (TC)n Simple_repeat Simple_repeat 2 136 0 4 1452 477 90 0 0 chr5 113713482 113713549 -38823710 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1452 951 174 0 0 chr5 113713571 113713749 -38823510 + (TGGG)n Simple_repeat Simple_repeat 3 180 0 4 1452 298 346 8 8 chr5 113713801 113713935 -38823324 + (TGGA)n Simple_repeat Simple_repeat 3 136 0 4 1452 198 128 0 0 chr5 113714155 113714194 -38823065 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1452 421 228 22 0 chr5 113715203 113715295 -38821964 + B3 SINE B2 3 96 -120 4 1452 328 182 23 0 chr5 113715998 113716086 -38821173 + G-rich Low_complexity Low_complexity 1 90 0 4 1452 301 279 50 35 chr5 113716683 113716824 -38820435 + HAL1-2a_MD LINE L1 2346 2488 -536 4 1452 1926 135 23 9 chr5 113716856 113717249 -38820010 + MTC LTR MaLR 1 418 -1 4 1452 322 298 38 9 chr5 113717349 113717454 -38819805 - B1F1 SINE Alu -41 108 1 4 1452 622 266 78 0 chr5 113717454 113717522 -38819737 - ID SINE ID -143 81 2 4 1452 3312 39 31 0 chr5 113718325 113718709 -38818550 + MTA_Mm LTR MaLR 1 396 0 4 1452 254 339 81 0 chr5 113719014 113719138 -38818121 + MIR3 SINE MIR 48 181 -27 4 1452 375 205 0 49 chr5 113719501 113719583 -38817676 - ID4_ SINE ID -3 80 3 4 1452 281 311 155 13 chr5 113719585 113719894 -38817365 + L1M3 LINE L1 2785 3137 -3003 4 1452 377 197 13 13 chr5 113719924 113720001 -38817258 + RSINE1 SINE B4 3 79 -86 4 1452 952 129 129 0 chr5 113720570 113720740 -38816519 - B2_Mm2 SINE B2 -3 192 1 4 1452 454 292 142 14 chr5 113720819 113721031 -38816228 + MLT1B LTR MaLR 20 258 -132 4 1452 237 376 0 0 chr5 113721032 113721125 -38816134 + MLT1B LTR MaLR 371 463 -4 4 1452 194 304 0 0 chr5 113722084 113722130 -38815129 - MIRm SINE MIR -145 131 86 4 1452 40 0 0 0 chr5 113722262 113722302 -38814957 + AT_rich Low_complexity Low_complexity 1 40 0 4 1452 1183 64 0 0 chr5 113722302 113722443 -38814816 - B1_Mus2 SINE Alu -5 142 2 4 1452 657 194 0 73 chr5 113722927 113723077 -38814182 - ID_B1 SINE B4 -3 221 83 4 1452 180 0 0 0 chr5 113723323 113723343 -38813916 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1452 314 248 57 38 chr5 113723375 113723480 -38813779 + RLTR14 LTR ERV1 274 380 -2 4 1452 306 250 15 88 chr5 113723489 113723613 -38813646 - MIRb SINE MIR -129 139 19 4 1452 229 270 48 39 chr5 113723793 113723897 -38813362 + ORR1D2 LTR MaLR 190 294 -76 4 1452 683 253 124 0 chr5 113723914 113724100 -38813159 + B3 SINE B2 1 209 -7 4 1452 819 169 21 0 chr5 113724125 113724267 -38812992 + B1_Mus2 SINE Alu 3 147 0 4 1452 1282 102 43 5 chr5 113724393 113724580 -38812679 - B2_Mm2 SINE B2 0 195 2 4 1452 1174 58 0 0 chr5 113724623 113724761 -38812498 - B1_Mm SINE Alu -9 138 1 4 1452 1140 108 204 5 chr5 113725578 113725764 -38811495 + URR1A DNA MER1_type 2 224 -2 4 1452 351 234 4 16 chr5 113726699 113726793 -38810466 + B4A SINE B4 1 93 -72 4 1452 190 118 0 0 chr5 113726837 113726871 -38810388 - L2b LINE L2 -213 3162 3129 4 1452 199 250 0 0 chr5 113726901 113726941 -38810318 + MIRm SINE MIR 114 153 -123 4 1452 232 229 32 32 chr5 113726911 113726974 -38810285 + MIRc SINE MIR 121 183 -85 4 1452 245 235 14 29 chr5 113727411 113727481 -38809778 + MER2B DNA MER2_type 178 246 -90 4 1452 270 125 0 0 chr5 113727694 113727742 -38809517 + (TTCA)n Simple_repeat Simple_repeat 4 51 0 4 1452 247 290 59 20 chr5 113728371 113728473 -38808786 + L1MC2 LINE L1 6227 6332 -12 4 1452 453 62 0 0 chr5 113729138 113729203 -38808056 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1452 318 106 0 0 chr5 113729589 113729636 -38807623 + (A)n Simple_repeat Simple_repeat 1 47 0 4 1452 1175 68 0 0 chr5 113729852 113729998 -38807261 + B1_Mus1 SINE Alu 2 147 -1 4 1452 823 155 13 78 chr5 113730056 113730210 -38807049 + B1_Mur3 SINE Alu 2 145 -4 4 1452 265 358 75 0 chr5 113730474 113730594 -38806665 + MER3 DNA MER1_type 13 141 -68 4 1452 343 223 57 19 chr5 113730898 113731003 -38806256 + MLT1A0 LTR MaLR 24 132 -233 4 1452 182 362 67 24 chr5 113731553 113731717 -38805542 + MIRb SINE MIR 62 232 -36 4 1452 243 0 0 0 chr5 113731831 113731858 -38805401 + (TTA)n Simple_repeat Simple_repeat 2 28 0 4 1452 580 222 76 0 chr5 113731937 113732089 -38805170 - ID_B1 SINE B4 -1 223 65 4 1452 368 228 19 56 chr5 113732103 113732210 -38805049 - B1_Mur2 SINE Alu -2 147 45 4 1452 1350 49 27 0 chr5 113732532 113732716 -38804543 + B2_Mm2 SINE B2 7 195 0 4 1452 1137 80 12 0 chr5 113732744 113732907 -38804352 + B2_Mm2 SINE B2 1 165 -30 4 1452 216 0 0 0 chr5 113732907 113732931 -38804328 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 4 1452 831 142 0 0 chr5 113733840 113733967 -38803292 + B1_Mur3 SINE Alu 1 127 -22 4 1452 244 227 67 15 chr5 113733951 113734085 -38803174 - RMER17A2 LTR ERVK -506 400 260 4 1452 196 289 166 3 chr5 113734105 113734271 -38802988 + L2b LINE L2 2800 2998 -421 4 1452 262 185 27 36 chr5 113734442 113734554 -38802705 + (TATATG)n Simple_repeat Simple_repeat 3 113 0 4 1452 538 227 12 0 chr5 113734568 113734731 -38802528 + (TA)n Simple_repeat Simple_repeat 2 166 0 4 1452 505 257 6 6 chr5 113734800 113734980 -38802279 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1452 930 301 46 7 chr5 113734982 113735263 -38801996 - B4A SINE B4 0 292 1 5 1452 409 274 92 29 chr5 113735428 113735635 -38801624 - HAL1-2a_MD LINE L1 -478 2546 2327 5 1452 418 271 82 0 chr5 113735692 113735814 -38801445 - MER20 DNA MER1_type -58 161 30 5 1452 190 333 22 22 chr5 113737542 113737634 -38799625 + MIRc SINE MIR 38 129 -139 5 1452 200 200 18 0 chr5 113738624 113738679 -38798580 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1452 240 188 168 50 chr5 113740019 113740120 -38797139 + PB1D10 SINE Alu 1 113 -4 5 1452 299 25 25 0 chr5 113740205 113740245 -38797014 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 5 1452 271 202 12 12 chr5 113740290 113740370 -38796889 + CT-rich Low_complexity Low_complexity 1 80 0 5 1452 869 83 0 0 chr5 113740731 113740852 -38796407 + B2_Mm2 SINE B2 13 133 -62 5 1452 539 208 66 8 chr5 113741284 113741405 -38795854 - B1_Mur2 SINE Alu -19 130 3 5 1452 1363 257 106 30 chr5 113741405 113741903 -38795356 - ORR1A3-int LTR MaLR -1233 730 195 5 1452 1481 78 5 10 chr5 113741919 113742113 -38795146 - B2_Mm1t SINE B2 0 193 1 5 1452 2269 123 22 0 chr5 113742122 113742440 -38794819 - ORR1A3 LTR MaLR -1 325 1 5 1452 1293 173 256 84 chr5 113742500 113742547 -38794712 - MTC LTR MaLR 0 421 378 5 1452 1253 48 0 0 chr5 113742547 113742694 -38794565 + B1_Mus1 SINE Alu 2 148 0 5 1452 186 71 0 0 chr5 113742703 113742731 -38794528 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1452 1293 173 256 84 chr5 113742731 113742952 -38794307 - MTC LTR MaLR -44 377 83 5 1452 405 0 0 0 chr5 113742952 113742997 -38794262 + (GA)n Simple_repeat Simple_repeat 2 46 0 5 1452 1293 173 256 84 chr5 113742997 113743076 -38794183 - MTC LTR MaLR -339 82 2 5 1452 361 318 128 41 chr5 113743523 113743769 -38793490 + MLT2B1 LTR ERVL 36 327 -390 5 1452 1242 54 0 0 chr5 113743769 113743916 -38793343 - B1_Mus1 SINE Alu 0 148 2 5 1452 361 340 134 45 chr5 113743916 113744059 -38793200 + MLT2B1 LTR ERVL 263 424 -96 5 1452 216 0 0 0 chr5 113744083 113744107 -38793152 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1452 765 247 7 0 chr5 113744483 113744637 -38792622 + RSINE1 SINE B4 1 155 -10 5 1452 315 0 0 0 chr5 113745048 113745083 -38792176 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1452 1213 48 12 12 chr5 113745087 113745256 -38792003 - B2_Mm1t SINE B2 -22 171 3 5 1452 630 281 25 71 chr5 113745722 113746005 -38791254 - B4A SINE B4 0 292 23 5 1452 855 150 0 52 chr5 113746278 113746433 -38790826 + B1_Mur2 SINE Alu 1 147 -2 5 1452 694 171 124 7 chr5 113746727 113746880 -38790379 + RLTR19-int LTR ERVK 289 459 -5678 5 1452 3451 196 140 96 chr5 113747161 113747506 -38789753 + RLTR19-int LTR ERVK 418 772 -5365 5 1452 315 0 0 0 chr5 113747506 113747541 -38789718 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1452 3451 196 140 96 chr5 113747541 113747642 -38789617 + RLTR19-int LTR ERVK 773 857 -5280 5 1452 465 34 0 0 chr5 113747642 113747701 -38789558 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 5 1452 3451 196 140 96 chr5 113747701 113748224 -38789035 + RLTR19-int LTR ERVK 858 1372 -4765 5 1452 414 69 0 0 chr5 113748224 113748282 -38788977 + (TA)n Simple_repeat Simple_repeat 1 58 0 5 1452 3451 196 140 96 chr5 113748282 113748582 -38788677 + RLTR19-int LTR ERVK 1373 1744 -4393 5 1452 323 74 0 36 chr5 113748589 113748645 -38788614 + B1_Mus2 SINE Alu 1 54 -93 5 1452 232 304 42 42 chr5 113748738 113748882 -38788377 + RLTR25B LTR ERVK 397 540 -488 5 1452 610 77 18 46 chr5 113748776 113748885 -38788374 + B1_Mus2 SINE Alu 42 147 0 5 1452 2528 216 155 55 chr5 113748909 113750138 -38787121 + RLTR19-int LTR ERVK 1750 3189 -2948 5 1452 709 259 65 135 chr5 113750307 113750766 -38786493 + RLTR23 LTR ERV1 4 430 0 5 1452 180 0 0 0 chr5 113751282 113751302 -38785957 + (C)n Simple_repeat Simple_repeat 1 20 0 5 1452 519 168 8 108 chr5 113751616 113751736 -38785523 - MTC LTR MaLR -310 111 4 5 1452 547 297 90 47 chr5 113751911 113752190 -38785069 + Lx8 LINE L1 6383 6673 -800 5 1452 296 241 11 84 chr5 113752205 113752300 -38784959 - BC1_Mm scRNA scRNA -62 90 3 5 1452 324 321 58 51 chr5 113752311 113752449 -38784810 - B1F1 SINE Alu -10 139 1 5 1452 401 333 95 13 chr5 113752527 113752758 -38784501 - MLT1D LTR MaLR -2 503 254 5 1452 711 171 163 45 chr5 113752837 113753015 -38784244 - B3 SINE B2 -17 199 1 5 1452 607 333 108 50 chr5 113753933 113754091 -38783168 + MTEa LTR MaLR 1 154 -225 5 1452 1180 172 25 0 chr5 113754091 113754295 -38782964 + B3 SINE B2 1 209 -7 5 1452 607 333 108 50 chr5 113754295 113754477 -38782782 + MTEa LTR MaLR 155 361 -18 5 1452 811 67 17 0 chr5 113754477 113754596 -38782663 + (GAA)n Simple_repeat Simple_repeat 3 123 0 5 1452 218 258 0 0 chr5 113755036 113755098 -38782161 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1452 1856 108 177 13 chr5 113755102 113755413 -38781846 + RLTR9A LTR ERVK 5 366 -2 5 1452 1799 224 48 12 chr5 113755550 113755966 -38781293 + RLTR19C LTR ERVK 1 431 -75 5 1452 415 347 91 65 chr5 113756146 113756411 -38780848 - ORR1E LTR MaLR -96 274 3 5 1452 229 281 0 0 chr5 113756428 113756485 -38780774 - ID SINE ID -142 82 26 5 1452 193 29 0 56 chr5 113756833 113756869 -38780390 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 5 1452 514 242 12 64 chr5 113757277 113757449 -38779810 + RNLTR23 LTR ERVK 480 642 0 5 1452 270 0 0 0 chr5 113758007 113758037 -38779222 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1452 671 169 312 76 chr5 113759132 113759356 -38777903 + MT2B LTR ERVL 11 287 -314 5 1452 1566 157 75 21 chr5 113759315 113759687 -38777572 + ORR1B1-int LTR MaLR 718 1109 -854 5 1452 1039 146 103 20 chr5 113759705 113759908 -38777351 + ORR1B1 LTR MaLR 175 394 0 5 1452 262 244 21 53 chr5 113760551 113760646 -38776613 + MTEa LTR MaLR 262 353 -26 5 1452 394 343 83 44 chr5 113760669 113761078 -38776181 + L1M4 LINE L1 4712 5136 -1010 5 1452 581 221 91 17 chr5 113761399 113761574 -38775685 - B3 SINE B2 -28 188 1 5 1452 647 260 26 0 chr5 113761850 113762004 -38775255 + RSINE1 SINE B4 3 160 -5 5 1452 225 189 18 36 chr5 113762047 113762102 -38775157 + tRNA-Ala-GCY_ tRNA tRNA 3 56 -19 5 1452 226 197 97 16 chr5 113762056 113762118 -38775141 + BC1_Mm scRNA scRNA 16 82 -70 5 1452 1183 218 58 111 chr5 113762150 113762527 -38774732 + ORR1D1 LTR MaLR 2 358 -16 5 1452 247 232 40 40 chr5 113762574 113762673 -38774586 + L1MA10 LINE L1 6236 6334 0 5 1452 243 0 0 0 chr5 113762909 113762936 -38774323 + (GA)n Simple_repeat Simple_repeat 1 27 0 5 1452 545 209 47 0 chr5 113763665 113763794 -38773465 - ID_B1 SINE B4 -2 222 88 5 1452 561 254 114 43 chr5 113764082 113764292 -38772967 - B4 SINE B4 -67 225 1 5 1452 490 274 53 44 chr5 113765297 113765503 -38771756 - MTE2a LTR MaLR -2 377 170 5 1452 301 218 183 43 chr5 113765514 113765629 -38771630 - MTE2a LTR MaLR -286 133 3 5 1452 902 267 163 25 chr5 113766000 113766326 -38770933 - MTEb LTR MaLR -7 372 2 5 1452 223 266 47 0 chr5 113767279 113767343 -38769916 - B2_Mm2 SINE B2 -125 70 4 5 1452 284 252 173 0 chr5 113767427 113767554 -38769705 - RMER15 LTR ERVL -85 490 342 5 1452 188 145 185 46 chr5 113770128 113770193 -38767066 - MIR SINE MIR -100 108 35 5 1453 278 106 0 21 chr5 113771549 113771597 -38765662 + (GGA)n Simple_repeat Simple_repeat 1 47 0 5 1453 1180 75 0 0 chr5 113772579 113772726 -38764533 + B1_Mm SINE Alu 1 147 0 5 1453 209 141 0 45 chr5 113772726 113772793 -38764466 + A-rich Low_complexity Low_complexity 1 64 0 5 1453 1159 176 169 57 chr5 113774570 113775089 -38762170 - RLTR20B3 LTR ERVK 0 577 1 5 1453 333 268 35 112 chr5 113777956 113778099 -38759160 - RMER15 LTR ERVL -97 478 347 5 1453 194 288 17 0 chr5 113778141 113778200 -38759059 - MIR SINE MIR -61 147 88 5 1453 198 0 0 0 chr5 113778420 113778442 -38758817 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 5 1453 217 205 0 0 chr5 113778643 113778682 -38758577 + C-rich Low_complexity Low_complexity 1 39 0 5 1453 1704 136 156 36 chr5 113778771 113779136 -38758123 - RMER19A LTR ERVK -9 728 320 5 1453 13406 157 50 22 chr5 113779153 113781712 -38755547 - MurERV4_19-int LTR ERVK -3058 2722 92 5 1453 208 215 0 58 chr5 113782454 113782523 -38754736 - MIRc SINE MIR -102 166 102 5 1453 237 289 106 0 chr5 113782964 113783068 -38754191 - MER3 DNA MER1_type -76 133 19 5 1453 508 343 51 51 chr5 113783614 113784084 -38753175 - L1MC LINE L1 -3552 2594 2125 5 1453 208 222 67 0 chr5 113784168 113784213 -38753046 - L2c LINE L2 -229 3158 3111 5 1453 21 0 0 0 chr5 113784446 113784467 -38752792 + GC_rich Low_complexity Low_complexity 1 21 0 5 1453 625 320 82 43 chr5 113787156 113787717 -38749542 + Lx7 LINE L1 7093 7675 -21 5 1453 228 255 93 93 chr5 113788215 113788323 -38748936 + MLT1A1 LTR MaLR 299 406 -2 5 1453 26 50 0 0 chr5 113788723 113788763 -38748496 + AT_rich Low_complexity Low_complexity 1 40 0 5 1453 401 248 295 50 chr5 113788765 113788885 -38748374 - Lx8 LINE L1 -5 7468 7328 5 1453 778 164 13 46 chr5 113788885 113789038 -38748221 - B1_Mur2 SINE Alu 0 149 2 5 1453 401 248 295 50 chr5 113789038 113789239 -38748020 - Lx8 LINE L1 -146 7327 7069 5 1453 3441 219 80 84 chr5 113789676 113789972 -38747287 - MurERV4-int LTR ERVK -2814 2446 2125 5 1453 211 286 0 28 chr5 113789972 113790044 -38747215 - L3 LINE CR1 -1988 2501 2432 5 1453 3441 219 80 84 chr5 113790044 113790961 -38746298 - MurERV4-int LTR ERVK -2814 2124 1126 5 1453 256 256 0 47 chr5 113790934 113791020 -38746239 - MurERV4-int LTR ERVK -5002 258 177 5 1453 816 288 129 30 chr5 113791344 113791407 -38745852 - Lx8 LINE L1 -592 6881 6813 5 1453 207 69 0 0 chr5 113791407 113791436 -38745823 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1453 816 288 129 30 chr5 113791436 113791744 -38745515 - Lx8 LINE L1 -661 6812 6474 5 1453 325 333 13 20 chr5 113791813 113791963 -38745296 - L1MA9 LINE L1 -245 6067 5919 5 1453 1190 95 15 59 chr5 113792521 113792723 -38744536 + B2_Mm2 SINE B2 3 195 0 5 1453 216 67 0 0 chr5 113793051 113793081 -38744178 + (CCA)n Simple_repeat Simple_repeat 1 30 0 5 1453 383 105 63 16 chr5 113794041 113794167 -38743092 + (CA)n Simple_repeat Simple_repeat 1 132 0 5 1453 254 317 89 0 chr5 113794917 113795018 -38742241 - B4 SINE B4 -169 123 14 5 1453 231 269 19 0 chr5 113795543 113795595 -38741664 + RSINE1 SINE B4 96 148 -17 5 1453 215 246 0 30 chr5 113795616 113795683 -38741576 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1453 271 321 28 9 chr5 113796065 113796172 -38741087 + ID_B1 SINE B4 69 177 -47 5 1453 377 187 0 62 chr5 113796850 113796947 -38740312 + ORR1A2 LTR MaLR 1 91 -236 6 1453 1954 69 7 7 chr5 113796955 113797233 -38740026 + ORR1A2 LTR MaLR 28 305 -22 6 1453 213 139 0 0 chr5 113797287 113797330 -38739929 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1453 410 279 88 31 chr5 113797422 113797581 -38739678 - Arthur1 DNA Tip100 -656 3291 3124 6 1453 1320 174 59 39 chr5 113797650 113797936 -38739323 - ORR1C2 LTR MaLR -85 299 8 6 1453 192 328 90 22 chr5 113798743 113798877 -38738382 + MIRb SINE MIR 15 157 -111 6 1453 1155 54 7 0 chr5 113799025 113799172 -38738087 - B1_Mus1 SINE Alu 0 148 1 6 1453 350 231 132 0 chr5 113799172 113799263 -38737996 + B1F SINE Alu 9 111 -38 6 1453 249 57 0 0 chr5 113799351 113799386 -38737873 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 6 1453 390 281 19 52 chr5 113799417 113799571 -38737688 + ORR1E LTR MaLR 1 149 -210 6 1453 279 0 0 0 chr5 113799682 113799713 -38737546 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 6 1453 334 311 125 10 chr5 113800423 113800615 -38736644 - Lx8 LINE L1 -179 7294 7081 6 1453 486 185 0 0 chr5 113800655 113800676 -38736583 + A-rich Low_complexity Low_complexity 1 21 0 6 1453 1107 41 7 39 chr5 113800676 113800829 -38736430 + B1_Mus1 SINE Alu 1 148 0 6 1453 486 185 0 0 chr5 113800829 113800915 -38736344 + A-rich Low_complexity Low_complexity 22 107 0 6 1453 202 304 29 0 chr5 113801204 113801289 -38735970 - MIRc SINE MIR -81 181 90 6 1453 644 229 149 0 chr5 113802694 113802882 -38734377 - B3 SINE B2 0 216 1 6 1453 180 176 0 0 chr5 113803899 113803933 -38733326 + CT-rich Low_complexity Low_complexity 3 36 0 6 1453 1009 77 0 34 chr5 113804045 113804192 -38733067 + B1_Mus1 SINE Alu 2 143 -5 6 1453 185 65 0 31 chr5 113804192 113804224 -38733035 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 6 1453 257 224 52 0 chr5 113804433 113804491 -38732768 - PB1 SINE Alu -50 77 17 6 1453 379 235 73 63 chr5 113804925 113805100 -38732159 + ORR1E LTR MaLR 10 183 -191 6 1453 187 347 0 0 chr5 113805255 113805330 -38731929 + L2 LINE L2 2675 2749 -670 6 1453 1427 176 132 3 chr5 113805345 113805664 -38731595 - MTD LTR MaLR -55 364 5 6 1453 451 284 47 0 chr5 113805745 113805872 -38731387 - B4 SINE B4 -54 238 106 6 1453 217 283 0 32 chr5 113806430 113806492 -38730767 - MIRm SINE MIR -136 140 81 6 1453 1237 160 13 27 chr5 113806500 113806725 -38730534 + URR1B DNA MER1_type 2 223 -2 6 1453 426 196 17 30 chr5 113806751 113806988 -38730271 + (CATA)n Simple_repeat Simple_repeat 1 234 0 6 1453 330 132 0 0 chr5 113806992 113807045 -38730214 + (TA)n Simple_repeat Simple_repeat 1 53 0 6 1453 306 173 0 0 chr5 113807117 113807192 -38730067 + (CATA)n Simple_repeat Simple_repeat 2 76 0 6 1453 222 233 0 0 chr5 113807194 113807254 -38730005 + (CCCA)n Simple_repeat Simple_repeat 4 63 0 6 1453 810 268 86 103 chr5 113807347 113807743 -38729516 - MTD LTR MaLR -14 405 17 6 1453 265 140 40 0 chr5 113807947 113807997 -38729262 - MIRc SINE MIR -111 157 106 6 1453 523 212 6 16 chr5 113808044 113808226 -38729033 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1453 371 259 28 14 chr5 113808306 113808451 -38728808 + (TG)n Simple_repeat Simple_repeat 1 147 0 6 1453 522 278 146 71 chr5 113808455 113808722 -38728537 - B4A SINE B4 -2 290 4 6 1453 385 313 100 58 chr5 113808742 113809152 -38728107 - L1M5 LINE L1 -858 5288 4862 6 1453 1414 169 143 87 chr5 113810187 113810631 -38726628 - RMER19C LTR ERVK 0 611 138 6 1453 486 200 192 6 chr5 113810791 113810947 -38726312 - MTC LTR MaLR -14 407 223 6 1453 474 240 0 0 chr5 113811088 113811259 -38726000 + (TG)n Simple_repeat Simple_repeat 1 171 0 6 1453 621 205 0 0 chr5 113811320 113811585 -38725674 + (TG)n Simple_repeat Simple_repeat 1 265 0 6 1453 323 160 32 11 chr5 113812459 113812554 -38724705 + (TG)n Simple_repeat Simple_repeat 1 97 0 6 1453 547 149 45 7 chr5 113812566 113812721 -38724538 + (TG)n Simple_repeat Simple_repeat 1 161 0 6 1453 438 67 75 9 chr5 113812766 113812872 -38724387 + (TG)n Simple_repeat Simple_repeat 2 114 0 6 1453 4250 16 0 0 chr5 113812872 113813362 -38723897 - MT2_Mm LTR ERVL -3 490 1 6 1453 301 0 0 0 chr5 113813362 113813400 -38723859 - MERVL-int LTR ERVL 0 5485 5448 6 1453 379 167 46 35 chr5 113813400 113813487 -38723772 - ORR1A3-int LTR MaLR -1323 640 553 6 1453 45989 16 6 0 chr5 113813487 113818813 -38718446 - MERVL-int LTR ERVL -125 5360 1 6 1453 4279 16 0 0 chr5 113818813 113819306 -38717953 - MT2_Mm LTR ERVL 0 493 1 6 1453 186 133 0 0 chr5 113819307 113819337 -38717922 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1453 785 303 113 14 chr5 113819354 113819850 -38717409 - L1M4 LINE L1 -747 5399 4855 6 1453 350 283 9 0 chr5 113819864 113819970 -38717289 + (TG)n Simple_repeat Simple_repeat 2 108 0 6 1453 594 198 18 0 chr5 113819983 113820150 -38717109 + (TG)n Simple_repeat Simple_repeat 2 171 0 6 1453 500 281 81 52 chr5 113820157 113820330 -38716929 - B3A SINE B2 -16 182 5 6 1453 542 280 127 91 chr5 113820391 113820753 -38716506 - MTE2a LTR MaLR 0 379 5 6 1453 231 367 0 43 chr5 113820759 113820853 -38716406 + PB1D10 SINE Alu 17 106 -11 6 1453 468 0 0 0 chr5 113820853 113820905 -38716354 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 6 1453 253 309 119 0 chr5 113820943 113821027 -38716232 - MIRb SINE MIR -133 135 42 6 1453 1174 95 28 0 chr5 113821213 113821392 -38715867 + B2_Mm2 SINE B2 12 195 0 6 1453 241 303 21 59 chr5 113821789 113822025 -38715234 + (TG)n Simple_repeat Simple_repeat 1 227 0 6 1453 212 161 0 67 chr5 113822110 113822170 -38715089 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1453 1182 97 39 17 chr5 113823816 113823994 -38713265 + B2_Mm2 SINE B2 1 182 -13 6 1453 26 0 0 0 chr5 113824594 113824620 -38712639 + AT_rich Low_complexity Low_complexity 1 26 0 6 1453 209 247 133 11 chr5 113824646 113824736 -38712523 + MIR SINE MIR 95 195 -67 6 1453 334 184 150 50 chr5 113824738 113824818 -38712441 + MTEb LTR MaLR 3 90 -289 6 1453 233 264 0 19 chr5 113827432 113827486 -38709773 + MER91A DNA Tip100 1 53 -143 6 1453 279 0 0 0 chr5 113828026 113828057 -38709202 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1453 1113 168 5 3 chr5 113829453 113830043 -38707216 + (TCCA)n Simple_repeat Simple_repeat 1 591 0 6 1453 189 0 0 0 chr5 113830249 113830270 -38706989 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 6 1453 778 285 153 38 chr5 113831023 113831421 -38705838 - MLT1H LTR MaLR 0 549 106 6 1453 232 163 11 44 chr5 113831452 113831542 -38705717 + (GGGTG)n Simple_repeat Simple_repeat 4 90 0 6 1453 456 19 0 0 chr5 113831652 113831705 -38705554 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1453 670 343 106 35 chr5 113833414 113834183 -38703076 + L2a LINE L2 2595 3425 -1 6 1453 2586 70 9 3 chr5 113834852 113835196 -38702063 + ORR1A1 LTR MaLR 1 346 0 6 1453 561 116 29 14 chr5 113835284 113835424 -38701835 + (TCTCTG)n Simple_repeat Simple_repeat 3 144 0 6 1453 492 312 110 30 chr5 113836873 113837137 -38700122 + B4A SINE B4 1 285 -7 6 1453 357 300 0 0 chr5 113837145 113837381 -38699878 + (CA)n Simple_repeat Simple_repeat 1 236 0 6 1453 186 0 28 56 chr5 113838029 113838065 -38699194 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 6 1453 367 211 24 16 chr5 113838300 113838554 -38698705 + (TG)n Simple_repeat Simple_repeat 1 256 0 6 1453 366 245 37 64 chr5 113838556 113838665 -38698594 - B4A SINE B4 0 292 187 6 1453 194 159 45 0 chr5 113839028 113839072 -38698187 + (CATG)n Simple_repeat Simple_repeat 1 46 0 6 1453 267 336 138 17 chr5 113839249 113839546 -38697713 - L1M2 LINE L1 -433 5858 5526 6 1453 357 297 107 7 chr5 113839665 113839814 -38697445 - L1M2 LINE L1 -777 5366 5203 6 1453 702 169 12 17 chr5 113841462 113841945 -38695314 + (CA)n Simple_repeat Simple_repeat 1 481 0 6 1453 1133 74 25 0 chr5 113842283 113842446 -38694813 - B2_Mm2 SINE B2 -9 186 20 6 1453 1763 124 52 61 chr5 113842470 113842797 -38694462 + ORR1A4 LTR MaLR 1 324 -5 6 1453 185 250 54 0 chr5 113843263 113843319 -38693940 - MIR SINE MIR -29 233 175 6 1453 204 312 0 13 chr5 113843662 113843740 -38693519 - MER5B DNA MER1_type -6 172 96 6 1453 1691 150 110 14 chr5 113843867 113844212 -38693047 + ORR1C1 LTR MaLR 1 378 0 6 1453 223 339 31 69 chr5 113844303 113844433 -38692826 - MER5A DNA MER1_type -58 131 7 6 1453 434 252 50 10 chr5 113844437 113844537 -38692722 + ETnERV2-int LTR ERVK 7097 7200 -206 6 1453 892 113 19 12 chr5 113844658 113844819 -38692440 - RLTR10 LTR ERVK -2 388 227 6 1453 239 82 0 39 chr5 113844824 113844875 -38692384 - RLTR10 LTR ERVK -83 307 259 6 1453 233 200 0 0 chr5 113844877 113844937 -38692322 - RLTR10 LTR ERVK -72 318 259 6 1453 2262 63 9 0 chr5 113844941 113845256 -38692003 - RLTR10 LTR ERVK -72 318 1 6 1453 604 238 147 20 chr5 113845888 113846085 -38691174 + B4A SINE B4 1 222 -70 6 1453 279 0 0 0 chr5 113846109 113846140 -38691119 + (TAG)n Simple_repeat Simple_repeat 2 32 0 6 1453 211 180 19 39 chr5 113846142 113846194 -38691065 + ID4_ SINE ID 29 79 -4 6 1453 377 224 59 158 chr5 113846240 113846410 -38690849 + B3A SINE B2 1 154 -44 6 1453 240 35 0 0 chr5 113846410 113846439 -38690820 + (TC)n Simple_repeat Simple_repeat 1 29 0 6 1453 377 224 59 158 chr5 113846439 113846470 -38690789 + B3A SINE B2 155 182 -16 6 1453 507 241 0 0 chr5 113846478 113846802 -38690457 + (CA)n Simple_repeat Simple_repeat 1 324 0 6 1453 427 230 0 12 chr5 113846835 113847002 -38690257 + (CA)n Simple_repeat Simple_repeat 2 166 0 6 1453 219 224 0 0 chr5 113847014 113847063 -38690196 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1453 1365 75 16 0 chr5 113847073 113847259 -38690000 - B2_Mm1a SINE B2 -4 189 1 6 1453 286 229 96 41 chr5 113847267 113847340 -38689919 + B4A SINE B4 212 288 -4 6 1453 180 0 0 0 chr5 113847382 113847402 -38689857 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 1453 316 399 93 40 chr5 113848446 113848767 -38688492 - MER2 DNA MER2_type -6 339 2 6 1453 571 266 158 58 chr5 113849032 113849272 -38687987 + B4A SINE B4 27 290 -2 6 1453 333 0 0 0 chr5 113850195 113850232 -38687027 + (TC)n Simple_repeat Simple_repeat 1 37 0 6 1453 878 256 86 4 chr5 113850276 113850543 -38686716 + MTEa LTR MaLR 13 301 -78 6 1453 259 250 0 12 chr5 113851960 113852045 -38685214 - ORR1D1 LTR MaLR -141 233 150 6 1453 234 224 0 0 chr5 113852056 113852141 -38685118 + GA-rich Low_complexity Low_complexity 2 86 0 6 1453 336 199 26 13 chr5 113852166 113852319 -38684940 + (CAGAGA)n Simple_repeat Simple_repeat 2 156 0 7 1453 431 229 0 6 chr5 113852294 113852470 -38684789 + GA-rich Low_complexity Low_complexity 2 176 0 7 1453 821 210 5 84 chr5 113852470 113852495 -38684764 - ORR1D1 LTR MaLR -187 187 164 6 1453 366 23 0 0 chr5 113852495 113852538 -38684721 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1453 513 0 0 0 chr5 113852538 113852594 -38684665 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1453 821 210 5 84 chr5 113852594 113852770 -38684489 - ORR1D1 LTR MaLR -211 163 2 6 1453 359 197 0 26 chr5 113852962 113853040 -38684219 + PB1D10 SINE Alu 5 80 -37 7 1453 287 253 24 0 chr5 113853040 113853123 -38684136 + Lx9 LINE L1 7407 7491 -153 7 1453 243 276 0 0 chr5 113853234 113853292 -38683967 + PB1 SINE Alu 70 127 0 7 1453 216 60 39 39 chr5 113853294 113853346 -38683913 + (CAAAAA)n Simple_repeat Simple_repeat 4 55 0 7 1453 240 208 0 0 chr5 113853350 113853398 -38683861 + ID4_ SINE ID 13 60 -23 7 1453 855 202 155 59 chr5 113853621 113853965 -38683294 + RLTR20C LTR ERVK 1 490 -88 7 1453 465 19 0 0 chr5 113853965 113854019 -38683240 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1453 417 209 203 28 chr5 113854019 113854093 -38683166 + RLTR20C LTR ERVK 491 577 -1 7 1453 639 201 0 0 chr5 113854800 113854974 -38682285 + (TCCA)n Simple_repeat Simple_repeat 1 174 0 7 1453 603 40 0 0 chr5 113855003 113855077 -38682182 + (TCTG)n Simple_repeat Simple_repeat 2 75 0 7 1453 2064 189 16 16 chr5 113855079 113855467 -38681792 - MTB_Mm LTR MaLR -10 397 10 7 1453 244 214 0 18 chr5 113855646 113855703 -38681556 + C-rich Low_complexity Low_complexity 2 57 0 7 1453 258 322 107 0 chr5 113855939 113856060 -38681199 + MER2 DNA MER2_type 143 276 -69 7 1453 657 211 8 0 chr5 113856537 113856785 -38680474 + CT-rich Low_complexity Low_complexity 1 250 0 7 1453 384 255 21 0 chr5 113856786 113856880 -38680379 - PB1D10 SINE Alu -21 96 1 7 1453 1083 294 99 24 chr5 113857049 113857422 -38679837 - MER70B LTR ERVL -102 476 76 7 1453 180 0 0 0 chr5 113857568 113857588 -38679671 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 7 1453 1018 115 10 0 chr5 113857622 113857830 -38679429 + (TCCA)n Simple_repeat Simple_repeat 1 209 0 7 1453 450 259 106 78 chr5 113858576 113858794 -38678465 + MTEb LTR MaLR 94 317 -62 7 1453 714 181 236 0 chr5 113858895 113859077 -38678182 - URR1A DNA MER1_type 0 226 2 7 1453 212 250 0 0 chr5 113859392 113859436 -38677823 + PB1 SINE Alu 68 111 -16 7 1453 596 213 16 0 chr5 113859432 113859554 -38677705 - B1_Mus1 SINE Alu -24 124 1 7 1453 285 256 267 72 chr5 113859594 113859817 -38677442 + B4A SINE B4 11 276 -16 7 1453 196 240 173 0 chr5 113860130 113860205 -38677054 + MIRb SINE MIR 54 141 -127 7 1453 26 50 0 0 chr5 113860769 113860809 -38676450 + AT_rich Low_complexity Low_complexity 1 40 0 7 1453 491 82 14 0 chr5 113861491 113861564 -38675695 + (GA)n Simple_repeat Simple_repeat 2 75 0 7 1453 428 230 13 92 chr5 113861962 113861982 -38675277 + ID_B1 SINE B4 70 193 -31 7 1453 769 118 0 45 chr5 113861982 113862089 -38675170 + B1_Mur4 SINE Alu 10 116 -34 7 1453 3123 53 2 5 chr5 113862089 113862490 -38674769 + MTB LTR MaLR 1 400 0 7 1453 428 230 13 92 chr5 113862490 113862515 -38674744 + ID_B1 SINE B4 194 210 -14 7 1453 1272 217 118 7 chr5 113862545 113862884 -38674375 + ORR1D1 LTR MaLR 1 394 0 7 1453 382 351 77 65 chr5 113862884 113863116 -38674143 + B4 SINE B4 42 276 -16 7 1453 216 0 0 0 chr5 113863173 113863197 -38674062 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1453 273 315 73 9 chr5 113863661 113863770 -38673489 + PB1D7 SINE Alu 1 116 -4 7 1453 224 79 53 0 chr5 113864218 113864256 -38673003 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 7 1453 284 64 21 0 chr5 113864521 113864568 -38672691 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1453 742 261 11 5 chr5 113864584 113864769 -38672490 + B3A SINE B2 1 186 -12 7 1453 577 200 39 23 chr5 113865357 113865528 -38671731 - MTD LTR MaLR 0 419 205 7 1453 235 296 143 0 chr5 113865788 113865886 -38671373 + B3 SINE B2 99 210 -6 7 1453 284 0 28 0 chr5 113866042 113866078 -38671181 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 7 1453 377 294 44 7 chr5 113867463 113867629 -38669630 + MIRc SINE MIR 80 252 -16 7 1453 1113 158 7 7 chr5 113867641 113867947 -38669312 + (TCCA)n Simple_repeat Simple_repeat 1 306 0 7 1453 295 302 84 95 chr5 113869445 113869624 -38667635 + MTEa LTR MaLR 5 181 -198 7 1453 321 201 183 68 chr5 113869929 113870240 -38667019 + MTD LTR MaLR 1 353 -26 7 1453 352 352 35 0 chr5 113870604 113870749 -38666510 - MLT1B LTR MaLR -206 184 35 7 1453 206 283 38 0 chr5 113870873 113870926 -38666333 + L2a LINE L2 3358 3412 -14 7 1453 345 185 61 12 chr5 113871552 113871634 -38665625 + MER3 DNA MER1_type 91 176 -33 7 1453 257 100 0 20 chr5 113871730 113871781 -38665478 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1453 206 183 0 32 chr5 113871844 113871906 -38665353 + (TATG)n Simple_repeat Simple_repeat 4 63 0 7 1453 3063 124 20 58 chr5 113871910 113872459 -38664800 - RLTR11A LTR ERVK 0 528 1 7 1453 674 258 78 0 chr5 113873553 113873720 -38663539 + B3A SINE B2 1 180 -18 7 1453 207 0 0 0 chr5 113873752 113873775 -38663484 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 7 1453 261 0 0 0 chr5 113874745 113874774 -38662485 + (CAG)n Simple_repeat Simple_repeat 1 29 0 7 1453 1200 54 0 0 chr5 113875111 113875259 -38662000 + B1_Mus1 SINE Alu 1 148 0 7 1453 380 42 56 0 chr5 113875259 113875330 -38661929 + (CAAAA)n Simple_repeat Simple_repeat 1 75 0 7 1453 190 227 106 0 chr5 113877661 113877727 -38659532 + MIRc SINE MIR 77 149 -119 7 1453 22 56 0 0 chr5 113877899 113877935 -38659324 + AT_rich Low_complexity Low_complexity 1 36 0 7 1453 652 252 19 13 chr5 113878113 113878266 -38658993 - B4A SINE B4 -2 290 137 7 1453 1134 182 50 78 chr5 113878266 113878588 -38658671 - ORR1D1 LTR MaLR 0 374 62 7 1453 680 120 8 50 chr5 113878642 113878802 -38658457 - ORR1D1 LTR MaLR -248 146 1 7 1453 2943 175 0 24 chr5 113878797 113879336 -38657923 - ORR1D1-int LTR MaLR -2 1368 843 7 1453 375 206 18 89 chr5 113879323 113879435 -38657824 - B4A SINE B4 -188 104 1 7 1453 246 128 0 0 chr5 113879778 113879817 -38657442 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1453 1378 248 92 6 chr5 113879871 113880228 -38657031 + MTD LTR MaLR 18 405 -14 7 1453 494 165 0 0 chr5 113880470 113880555 -38656704 - RSINE1 SINE B4 -52 113 29 7 1453 215 189 0 19 chr5 113881033 113881087 -38656172 + CT-rich Low_complexity Low_complexity 3 55 0 7 1453 206 176 59 0 chr5 113881245 113881296 -38655963 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1453 760 147 16 38 chr5 113881305 113881489 -38655770 + (CATA)n Simple_repeat Simple_repeat 1 180 0 7 1453 222 232 0 35 chr5 113881659 113881717 -38655542 + CT-rich Low_complexity Low_complexity 1 56 0 7 1453 301 316 24 79 chr5 113882753 113882880 -38654379 + B4A SINE B4 1 120 -172 7 1453 348 24 0 0 chr5 113882920 113882961 -38654298 + (CAA)n Simple_repeat Simple_repeat 2 42 0 7 1453 312 310 124 0 chr5 113883706 113883819 -38653440 + MIR SINE MIR 23 149 -113 7 1453 224 229 21 0 chr5 113883865 113883913 -38653346 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1453 189 147 0 0 chr5 113883925 113883959 -38653300 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1453 385 227 284 10 chr5 113884161 113884358 -38652901 - L1ME2 LINE L1 -302 5866 5624 7 1453 292 261 34 54 chr5 113885330 113885462 -38651797 + MIRc SINE MIR 46 169 -93 7 1453 251 288 17 47 chr5 113885674 113885816 -38651443 + MLT1A1 LTR MaLR 259 444 -23 7 1453 461 305 85 10 chr5 113885818 113886017 -38651242 + MLT1J LTR MaLR 204 417 -95 7 1453 4910 105 29 14 chr5 113886896 113887622 -38649637 - RMER19A LTR ERVK 0 737 1 7 1453 230 259 0 0 chr5 113889229 113889283 -38647976 + (ATTG)n Simple_repeat Simple_repeat 1 54 0 7 1453 267 318 45 23 chr5 113889390 113889522 -38647737 - ORR1E LTR MaLR -224 135 1 7 1453 503 309 94 31 chr5 113889713 113889967 -38647292 - MLT1K LTR MaLR -72 523 254 7 1453 306 73 0 0 chr5 113889967 113890008 -38647251 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 7 1453 364 185 15 0 chr5 113890008 113890073 -38647186 - B1F SINE Alu -9 140 75 7 1453 306 87 0 0 chr5 113890361 113890407 -38646852 + (TA)n Simple_repeat Simple_repeat 1 46 0 7 1453 23 0 0 0 chr5 113890469 113890492 -38646767 + AT_rich Low_complexity Low_complexity 1 23 0 7 1453 240 182 0 0 chr5 113890840 113890884 -38646375 - ORR1C2 LTR MaLR 0 384 341 7 1453 244 288 117 52 chr5 113891018 113891172 -38646087 + L1M5 LINE L1 5602 5765 -359 7 1453 406 215 0 12 chr5 113893015 113893095 -38644164 + ID4_ SINE ID 2 80 -3 7 1453 515 215 11 33 chr5 113893225 113893408 -38643851 + (TATG)n Simple_repeat Simple_repeat 1 179 0 7 1453 229 181 0 53 chr5 113893416 113893492 -38643767 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 7 1453 420 236 18 12 chr5 113893525 113893692 -38643567 + (TATG)n Simple_repeat Simple_repeat 2 169 0 7 1453 243 163 0 39 chr5 113893698 113893749 -38643510 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 1453 636 202 8 0 chr5 113894675 113894794 -38642465 + MTC LTR MaLR 1 120 -301 7 1453 796 208 77 22 chr5 113894789 113894811 -38642448 - B2_Mm1t SINE B2 0 193 175 7 1453 234 0 0 0 chr5 113894811 113894837 -38642422 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 7 1453 900 125 14 4 chr5 113894837 113894996 -38642263 - B2_Mm2 SINE B2 -19 174 2 7 1453 2139 107 6 3 chr5 113894996 113895311 -38641948 + MTC LTR MaLR 106 421 0 7 1453 297 0 0 0 chr5 113895597 113895630 -38641629 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1453 312 27 0 0 chr5 113896382 113896419 -38640840 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 1453 758 124 7 0 chr5 113896419 113896571 -38640688 + (CA)n Simple_repeat Simple_repeat 1 154 0 7 1453 390 216 34 0 chr5 113897177 113897265 -38639994 + PB1D7 SINE Alu 18 108 -12 7 1453 284 209 60 0 chr5 113898428 113898495 -38638764 + MLT1L LTR MaLR 160 230 -380 7 1453 534 221 9 0 chr5 113898636 113898749 -38638510 + B3A SINE B2 3 116 -82 7 1453 405 308 14 7 chr5 113899775 113899919 -38637340 + GA-rich Low_complexity Low_complexity 3 147 0 8 1453 244 317 8 40 chr5 113899954 113900079 -38637180 + GA-rich Low_complexity Low_complexity 2 122 0 8 1453 3128 80 2 5 chr5 113900138 113900539 -38636720 + MTB LTR MaLR 1 400 0 8 1453 278 221 15 0 chr5 113900673 113900741 -38636518 - L1M5 LINE L1 -743 5430 5362 8 1453 203 146 0 24 chr5 113900767 113900809 -38636450 + T-rich Low_complexity Low_complexity 2 42 0 8 1453 342 0 0 0 chr5 113900822 113900860 -38636399 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1453 501 187 10 19 chr5 113900909 113901022 -38636237 - B1F SINE Alu -6 111 5 8 1453 378 244 41 35 chr5 113900928 113901048 -38636211 - ID_B1 SINE B4 -105 187 63 8 1454 977 253 103 73 chr5 113901898 113902256 -38635003 + MTEa LTR MaLR 1 369 -10 8 1454 220 283 20 0 chr5 113903150 113903222 -38634037 + MIRc SINE MIR 81 158 -118 8 1454 398 326 41 144 chr5 113903222 113903638 -38633621 + MTEb LTR MaLR 6 378 -1 8 1454 401 335 96 23 chr5 113904054 113904314 -38632945 + MLT1H LTR MaLR 12 290 -259 8 1454 198 298 0 0 chr5 113904628 113904675 -38632584 - MIRb SINE MIR -187 81 35 8 1454 541 250 11 116 chr5 113905308 113905489 -38631770 - RSINE1 SINE B4 -2 163 2 8 1454 203 286 60 0 chr5 113906381 113906465 -38630794 + MIRb SINE MIR 2 90 -178 8 1454 566 284 7 20 chr5 113907200 113907351 -38629908 + B1F1 SINE Alu 1 149 0 8 1454 882 186 0 0 chr5 113907613 113907975 -38629284 + (CA)n Simple_repeat Simple_repeat 1 362 0 8 1454 638 183 7 0 chr5 113908288 113908575 -38628684 + (TG)n Simple_repeat Simple_repeat 1 289 0 8 1454 558 268 74 28 chr5 113908575 113908790 -38628469 - B4 SINE B4 0 292 68 8 1454 216 67 0 0 chr5 113908821 113908851 -38628408 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 8 1454 688 211 7 45 chr5 113908852 113909006 -38628253 - B1_Mur1 SINE Alu -1 148 1 8 1454 353 288 46 46 chr5 113909432 113909563 -38627696 + B3A SINE B2 1 131 -62 8 1454 958 234 46 13 chr5 113909764 113909798 -38627461 + B4A SINE B4 47 80 -212 8 1454 1042 88 0 19 chr5 113909798 113909960 -38627299 + (GAAA)n Simple_repeat Simple_repeat 3 161 0 8 1454 958 234 46 13 chr5 113909960 113910139 -38627120 + B4A SINE B4 81 267 -25 8 1454 360 0 0 0 chr5 113910139 113910179 -38627080 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1454 958 234 46 13 chr5 113910179 113910202 -38627057 + B4A SINE B4 268 290 -2 8 1454 188 146 0 47 chr5 113910207 113910250 -38627009 + (CATA)n Simple_repeat Simple_repeat 4 44 0 8 1454 219 146 0 0 chr5 113910301 113910342 -38626917 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 8 1454 793 302 170 11 chr5 113910421 113910944 -38626315 - L1MA9 LINE L1 -256 6056 5451 8 1454 207 204 0 0 chr5 113910944 113910998 -38626261 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1454 536 224 0 6 chr5 113911012 113911178 -38626081 + (TG)n Simple_repeat Simple_repeat 2 166 0 8 1454 462 18 0 0 chr5 113911178 113911233 -38626026 + (GA)n Simple_repeat Simple_repeat 1 55 0 8 1454 246 257 43 0 chr5 113911373 113911443 -38625816 + MER3 DNA MER1_type 137 209 0 8 1454 181 314 0 0 chr5 113911505 113911556 -38625703 + MIRm SINE MIR 218 268 -8 8 1454 252 130 0 0 chr5 113912316 113912362 -38624897 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1454 239 310 108 20 chr5 113912367 113912515 -38624744 + MIRc SINE MIR 67 227 -41 8 1454 4291 113 128 3 chr5 113912581 113913236 -38624023 + RMER19A LTR ERVK 1 737 0 8 1454 198 296 69 14 chr5 113913821 113913893 -38623366 - MIRc SINE MIR -102 166 91 8 1454 356 149 43 0 chr5 113914306 113914400 -38622859 + CT-rich Low_complexity Low_complexity 2 99 0 8 1454 243 303 22 11 chr5 113915486 113915576 -38621683 - L1M5 LINE L1 -355 5885 5795 8 1454 529 250 179 26 chr5 113915678 113915972 -38621287 - MTEa LTR MaLR -2 377 1 8 1454 626 239 80 65 chr5 113916028 113916229 -38621030 + ID_B1 SINE B4 2 205 -19 8 1454 307 233 151 0 chr5 113916305 113916391 -38620868 + ID_B1 SINE B4 78 176 -48 8 1454 348 243 25 31 chr5 113916323 113916444 -38620815 + PB1D10 SINE Alu 27 148 -1 8 1454 302 143 157 0 chr5 113916585 113916655 -38620604 - B1F1 SINE Alu -46 103 23 8 1454 355 327 76 52 chr5 113916721 113916931 -38620328 - MIRb SINE MIR -26 242 28 8 1454 258 381 45 8 chr5 113916968 113917214 -38620045 + L5 LINE RTE 1932 2186 -79 8 1454 215 256 76 13 chr5 113917543 113917622 -38619637 - MIR SINE MIR -123 139 56 8 1454 491 265 33 39 chr5 113917626 113917722 -38619537 + MTEa LTR MaLR 5 104 -275 8 1454 2738 115 52 2 chr5 113917722 113918123 -38619136 - MTC LTR MaLR 0 421 1 8 1454 491 289 93 40 chr5 113918123 113918220 -38619039 + MTEa LTR MaLR 105 224 -155 8 1454 409 297 126 21 chr5 113918699 113918942 -38618317 + B4A SINE B4 2 270 -22 8 1454 233 57 29 0 chr5 113918994 113919029 -38618230 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1454 808 176 0 14 chr5 113919042 113919180 -38618079 + B1_Mur3 SINE Alu 1 136 -13 8 1454 30 0 0 0 chr5 113919209 113919239 -38618020 + AT_rich Low_complexity Low_complexity 1 30 0 8 1454 23 68 0 0 chr5 113919710 113919754 -38617505 + GC_rich Low_complexity Low_complexity 1 44 0 8 1454 216 208 36 36 chr5 113919812 113919867 -38617392 + (CCCCAG)n Simple_repeat Simple_repeat 4 58 0 8 1454 208 356 29 9 chr5 113921068 113921173 -38616086 + MIR3 SINE MIR 69 175 -33 8 1454 288 0 0 0 chr5 113921232 113921264 -38615995 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1454 186 43 0 0 chr5 113922161 113922184 -38615075 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1454 353 209 25 0 chr5 113923744 113923907 -38613352 + (TG)n Simple_repeat Simple_repeat 1 167 0 8 1454 426 217 4 15 chr5 113923920 113924190 -38613069 + (TG)n Simple_repeat Simple_repeat 1 266 0 8 1454 351 0 0 0 chr5 113924201 113924240 -38613019 + (GA)n Simple_repeat Simple_repeat 1 39 0 8 1454 333 0 0 0 chr5 113924240 113924276 -38612983 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1454 275 275 8 0 chr5 113924905 113925036 -38612223 + (TCCA)n Simple_repeat Simple_repeat 4 135 0 8 1454 255 316 13 0 chr5 113925047 113925123 -38612136 + (TCCA)n Simple_repeat Simple_repeat 1 77 0 8 1454 578 219 7 0 chr5 113925135 113925286 -38611973 + (TCCA)n Simple_repeat Simple_repeat 3 154 0 8 1454 230 283 98 0 chr5 113925446 113925538 -38611721 + MIRb SINE MIR 162 262 -6 8 1454 544 292 17 23 chr5 113925813 113925988 -38611271 + MER58A DNA MER1_type 51 224 0 8 1454 231 303 101 0 chr5 113926515 113926617 -38610642 + MIR3 SINE MIR 101 218 -58 8 1454 194 335 104 69 chr5 113926758 113926802 -38610457 + L4 LINE RTE 1702 1859 -170 8 1454 474 317 14 7 chr5 113926802 113926948 -38610311 - MIR SINE MIR -115 147 1 8 1454 194 335 104 69 chr5 113926948 113926960 -38610299 + L4 LINE RTE 1860 1910 -119 8 1454 1115 72 0 0 chr5 113927024 113927162 -38610097 + B1_Mus1 SINE Alu 5 142 -6 8 1454 1535 48 0 0 chr5 113927162 113927349 -38609910 + L1_Mus1 LINE L1 6380 6566 -1 8 1454 212 259 0 18 chr5 113927351 113927406 -38609853 + GA-rich Low_complexity Low_complexity 2 55 0 8 1454 338 231 8 0 chr5 113927424 113927541 -38609718 + (TG)n Simple_repeat Simple_repeat 1 118 0 8 1454 342 226 0 0 chr5 113927921 113928058 -38609201 + (CA)n Simple_repeat Simple_repeat 2 138 0 8 1454 385 240 3 14 chr5 113928071 113928367 -38608892 + (CA)n Simple_repeat Simple_repeat 1 292 0 8 1454 217 306 55 14 chr5 113929059 113929132 -38608127 + ID4_ SINE ID 8 83 0 8 1454 281 218 13 0 chr5 113929133 113929211 -38608048 + GA-rich Low_complexity Low_complexity 3 81 0 8 1454 257 311 92 25 chr5 113929417 113929563 -38607696 + MIRb SINE MIR 16 159 -103 8 1454 250 239 5 0 chr5 113929585 113929650 -38607609 + MIR SINE MIR 107 179 -89 8 1454 945 207 97 55 chr5 113929732 113930191 -38607068 - RLTR20C LTR ERVK 0 551 1 8 1454 187 295 0 47 chr5 113930224 113930288 -38606971 + MIR SINE MIR 111 171 -91 8 1454 252 0 0 0 chr5 113931596 113931624 -38605635 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 1454 681 206 0 0 chr5 113931625 113931847 -38605412 + (CA)n Simple_repeat Simple_repeat 1 222 0 8 1454 333 163 11 34 chr5 113933517 113933606 -38603653 + C-rich Low_complexity Low_complexity 2 88 0 8 1454 205 312 0 0 chr5 113934140 113934188 -38603071 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 8 1454 310 284 29 0 chr5 113934412 113934514 -38602745 + CT-rich Low_complexity Low_complexity 4 108 0 8 1454 319 294 0 10 chr5 113934830 113934933 -38602326 + (TG)n Simple_repeat Simple_repeat 1 102 0 8 1454 245 273 19 6 chr5 113934957 113935119 -38602140 + (TG)n Simple_repeat Simple_repeat 2 165 0 8 1454 239 182 73 29 chr5 113935120 113935188 -38602071 + RLTR22_Mus LTR ERVK 1261 1331 -477 8 1454 1148 89 0 0 chr5 113936570 113936716 -38600543 + B1_Mus2 SINE Alu 2 147 0 8 1454 555 16 0 0 chr5 113936716 113936780 -38600479 + (GAA)n Simple_repeat Simple_repeat 2 65 0 8 1454 687 12 0 0 chr5 113936780 113936860 -38600399 + (CAG)n Simple_repeat Simple_repeat 2 81 0 8 1454 388 283 10 0 chr5 113937155 113937254 -38600005 - PB1D10 SINE Alu -6 111 12 8 1454 197 319 16 56 chr5 113937881 113938007 -38599252 - L2c LINE L2 -166 3221 3101 8 1454 382 169 0 135 chr5 113938131 113938227 -38599032 + PB1D7 SINE Alu 9 91 -29 8 1454 276 212 131 90 chr5 113939018 113939163 -38598096 - MIR3 SINE MIR -22 186 36 8 1454 301 299 46 18 chr5 113940303 113940412 -38596847 + MIR SINE MIR 72 183 -79 8 1454 243 0 0 0 chr5 113940926 113940953 -38596306 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 8 1454 342 313 147 31 chr5 113941361 113941654 -38595605 - MLT1D LTR MaLR -93 412 86 8 1454 596 323 0 5 chr5 113942267 113942454 -38594805 + MIR SINE MIR 27 212 -50 8 1454 303 28 0 0 chr5 113943382 113943418 -38593841 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1454 207 0 0 0 chr5 113943711 113943734 -38593525 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1454 1293 146 78 87 chr5 113943734 113944136 -38593123 + MTD LTR MaLR 13 394 -6 8 1454 312 108 0 30 chr5 113944422 113944489 -38592770 - B2_Mm1a SINE B2 -2 191 127 8 1454 222 37 0 0 chr5 113944540 113944567 -38592692 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 8 1454 1071 90 13 6 chr5 113944568 113944725 -38592534 - B2_Mm2 SINE B2 -37 158 1 8 1454 202 195 0 0 chr5 113946231 113946272 -38590987 + (GGCTG)n Simple_repeat Simple_repeat 4 44 0 9 1454 278 229 30 30 chr5 113946337 113946436 -38590823 + (ATGTG)n Simple_repeat Simple_repeat 1 99 0 9 1454 229 397 17 0 chr5 113946607 113946723 -38590536 - Tigger5 DNA MER2_type -2180 226 109 9 1454 185 315 157 46 chr5 113946874 113947027 -38590232 + MIRm SINE MIR 17 186 -90 9 1454 239 286 43 11 chr5 113947098 113947190 -38590069 + MIR SINE MIR 77 171 -91 9 1454 228 284 101 16 chr5 113947699 113947828 -38589431 + MLT1C LTR MaLR 42 181 -286 9 1454 251 273 15 0 chr5 113947867 113947933 -38589326 + RSINE1 SINE B4 67 133 -32 9 1454 729 150 14 7 chr5 113947943 113948091 -38589168 + (TAGA)n Simple_repeat Simple_repeat 1 149 0 9 1454 207 200 25 0 chr5 113948103 113948143 -38589116 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 9 1454 833 158 17 6 chr5 113948146 113948324 -38588935 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 9 1454 949 103 23 11 chr5 113948362 113948538 -38588721 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 9 1454 331 328 82 0 chr5 113948655 113948789 -38588470 + Lx8 LINE L1 6856 7000 -473 9 1454 868 158 157 40 chr5 113949125 113949323 -38587936 - URR1A DNA MER1_type 0 226 6 9 1454 264 276 131 46 chr5 113950604 113950779 -38586480 - MLT1K LTR MaLR -4 591 402 9 1454 606 261 90 5 chr5 113986291 113986491 -38550768 - MTE2b LTR MaLR -161 218 2 9 1454 534 179 43 43 chr5 113988154 113988271 -38548988 + PB1D10 SINE Alu 1 117 0 9 1454 1170 58 0 0 chr5 113988431 113988568 -38548691 + B1_Mus2 SINE Alu 2 138 -9 9 1454 186 43 0 0 chr5 113988568 113988591 -38548668 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1454 258 317 107 17 chr5 113988790 113988958 -38548301 + MIRc SINE MIR 2 184 -84 9 1454 390 21 0 0 chr5 113989376 113989423 -38547836 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1454 186 377 53 23 chr5 113990430 113990601 -38546658 - MIRc SINE MIR -63 205 30 9 1454 491 336 0 14 chr5 113990602 113990747 -38546512 + RSINE1 SINE B4 2 144 -21 9 1454 261 0 0 0 chr5 113990825 113990854 -38546405 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1454 417 299 38 85 chr5 113993596 113993808 -38543451 - L1MA5 LINE L1 -6 6294 6093 9 1454 491 295 53 29 chr5 113993986 113994192 -38543067 - L1MC1 LINE L1 -215 6118 5908 9 1454 182 320 20 49 chr5 113994810 113994912 -38542347 + MIRb SINE MIR 162 260 -8 9 1454 1386 67 56 0 chr5 113995189 113995368 -38541891 - B2_Mm2 SINE B2 -6 189 1 9 1454 806 252 48 5 chr5 113996212 113996419 -38540840 + ID_B1 SINE B4 1 216 -8 9 1454 235 271 0 0 chr5 113996452 113996511 -38540748 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1454 547 350 6 3 chr5 113997224 113997553 -38539706 + (TG)n Simple_repeat Simple_repeat 1 329 0 9 1454 285 338 21 7 chr5 113997905 113998045 -38539214 + (TGGA)n Simple_repeat Simple_repeat 1 142 0 9 1454 568 281 0 0 chr5 113998636 113998764 -38538495 + ID_B1 SINE B4 84 211 -13 9 1454 225 0 0 0 chr5 113998766 113998791 -38538468 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 9 1454 686 273 262 9 chr5 113999291 113999524 -38537735 + B4A SINE B4 1 292 0 9 1454 550 152 17 39 chr5 113999541 113999719 -38537540 + (CATA)n Simple_repeat Simple_repeat 4 177 0 9 1454 375 230 12 6 chr5 113999703 113999869 -38537390 + (CA)n Simple_repeat Simple_repeat 2 168 0 9 1454 207 100 0 0 chr5 114001120 114001150 -38536109 + (GGAGAA)n Simple_repeat Simple_repeat 1 30 0 1 1454 227 252 124 19 chr5 114001503 114001608 -38535651 + PB1D10 SINE Alu 1 116 -1 2 1454 697 247 102 0 chr5 114001947 114002133 -38535126 + ID_B1 SINE B4 13 217 -7 3 1454 530 276 41 53 chr5 114002142 114002326 -38534933 + B3A SINE B2 1 173 -20 4 1454 249 233 133 19 chr5 114002756 114002861 -38534398 + MIR SINE MIR 21 137 -71 5 1454 387 319 164 54 chr5 114003701 114003999 -38533260 + MER2B DNA MER2_type 1 331 -5 6 1454 180 327 110 26 chr5 114004138 114004292 -38532967 - MIRb SINE MIR -2 266 100 7 1454 236 362 28 17 chr5 114004768 114004945 -38532314 + (CATA)n Simple_repeat Simple_repeat 1 179 0 8 1454 288 265 50 20 chr5 114006970 114007070 -38530189 + MIR SINE MIR 21 123 -139 9 1454 217 94 18 36 chr5 114007266 114007321 -38529938 + (TTTG)n Simple_repeat Simple_repeat 4 57 0 1 1454 1191 68 0 0 chr5 114007321 114007468 -38529791 - B1_Mus1 SINE Alu 0 148 2 1 1454 234 284 24 24 chr5 114008435 114008518 -38528741 + (TATG)n Simple_repeat Simple_repeat 3 85 0 1 1454 249 260 0 0 chr5 114008530 114008607 -38528652 + (TATG)n Simple_repeat Simple_repeat 2 78 0 1 1454 361 355 0 0 chr5 114008611 114008732 -38528527 + (TATATG)n Simple_repeat Simple_repeat 3 123 0 1 1454 321 96 19 0 chr5 114009872 114009924 -38527335 - HAL1-3A_ME LINE L1 -831 2027 1975 1 1454 267 219 0 42 chr5 114009930 114010049 -38527210 + (TATG)n Simple_repeat Simple_repeat 1 114 0 1 1454 381 246 0 0 chr5 114010158 114010292 -38526967 + (TG)n Simple_repeat Simple_repeat 1 134 0 1 1454 399 326 7 0 chr5 114010304 114010448 -38526811 + (TG)n Simple_repeat Simple_repeat 2 146 0 1 1454 381 223 98 0 chr5 114011313 114011425 -38525834 + PB1 SINE Alu 1 123 -4 1 1454 393 192 14 14 chr5 114011446 114011520 -38525739 + ID4_ SINE ID 5 78 -5 1 1454 576 138 8 17 chr5 114011528 114011646 -38525613 + GA-rich Low_complexity Low_complexity 4 120 0 1 1454 1059 163 148 30 chr5 114012751 114012953 -38524306 - URR1A DNA MER1_type 0 226 1 2 1454 1358 105 5 0 chr5 114014764 114014954 -38522305 - B2_Mm1a SINE B2 0 193 3 2 1454 260 321 119 22 chr5 114016401 114016535 -38520724 - LTR16C LTR ERVL -184 305 159 2 1454 185 171 29 0 chr5 114016635 114016670 -38520589 - MIRc SINE MIR -119 149 114 2 1454 315 286 31 31 chr5 114017859 114017989 -38519270 - B1_Mus1 SINE Alu -18 130 1 2 1454 970 191 21 0 chr5 114017989 114018063 -38519196 - ID SINE ID -142 82 5 2 1454 279 239 75 0 chr5 114018271 114018338 -38518921 + ID4 SINE ID 1 72 -11 2 1454 336 93 398 20 chr5 114018704 114018802 -38518457 - B2_Mm2 SINE B2 -14 181 47 2 1454 1116 63 126 0 chr5 114018847 114019006 -38518253 - B2_Mm1t SINE B2 -14 179 1 2 1454 2162 202 24 43 chr5 114019493 114019830 -38517429 - MT2A LTR ERVL -71 462 129 2 1454 2590 114 4 125 chr5 114019830 114020293 -38516966 - MTB_Mm LTR MaLR 0 407 1 3 1454 2162 202 24 43 chr5 114020293 114020421 -38516838 - MT2A LTR ERVL -405 128 6 2 1454 732 223 58 0 chr5 114021139 114021278 -38515981 + RSINE1 SINE B4 3 149 -16 3 1454 305 348 119 28 chr5 114021547 114021798 -38515461 - MER2 DNA MER2_type 0 345 72 3 1454 286 408 0 15 chr5 114022550 114022682 -38514577 + MIR3 SINE MIR 66 195 -13 3 1454 270 279 25 0 chr5 114022720 114022799 -38514460 + CT-rich Low_complexity Low_complexity 3 83 0 3 1454 1064 237 175 14 chr5 114022941 114023301 -38513958 + MTD LTR MaLR 1 418 -1 3 1454 186 133 0 0 chr5 114023301 114023331 -38513928 + (TGG)n Simple_repeat Simple_repeat 2 31 0 3 1454 375 302 79 39 chr5 114023407 114023589 -38513670 - MIR SINE MIR -29 233 37 3 1454 718 169 0 12 chr5 114024135 114024385 -38512874 + (CA)n Simple_repeat Simple_repeat 1 246 0 3 1454 193 265 61 0 chr5 114024428 114024477 -38512782 - MIRm SINE MIR -10 266 215 3 1454 257 406 36 0 chr5 114025020 114025158 -38512101 + MIRb SINE MIR 80 222 -46 4 1454 1240 54 0 0 chr5 114026327 114026474 -38510785 + B1_Mm SINE Alu 1 147 0 4 1454 246 62 0 0 chr5 114026475 114026507 -38510752 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 4 1454 198 0 0 0 chr5 114027035 114027057 -38510202 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1454 243 0 0 0 chr5 114028487 114028514 -38508745 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1454 203 327 36 36 chr5 114029367 114029478 -38507781 - MIR SINE MIR -123 139 29 4 1454 199 179 145 12 chr5 114030119 114030212 -38507047 + MIR SINE MIR 80 184 -78 4 1454 21 0 0 0 chr5 114030767 114030788 -38506471 + GC_rich Low_complexity Low_complexity 1 21 0 4 1454 273 301 58 33 chr5 114030941 114031124 -38506135 + MIRb SINE MIR 18 211 -65 4 1454 879 134 42 0 chr5 114031248 114031390 -38505869 + B1_Mur3 SINE Alu 2 149 0 4 1454 304 306 60 46 chr5 114031505 114031656 -38505603 - L1MDa LINE L1 -4543 2090 1938 5 1454 208 106 0 78 chr5 114031899 114031950 -38505309 + T-rich Low_complexity Low_complexity 6 52 0 5 1455 1318 132 0 0 chr5 114033011 114033200 -38504059 + B2_Mm2 SINE B2 1 189 -6 5 1455 246 32 0 0 chr5 114034363 114034394 -38502865 + (CA)n Simple_repeat Simple_repeat 1 31 0 5 1455 212 100 24 24 chr5 114034502 114034543 -38502716 + (CCCCCA)n Simple_repeat Simple_repeat 2 42 0 5 1455 584 109 39 29 chr5 114034706 114034810 -38502449 + B1_Mur3 SINE Alu 45 149 0 5 1455 1303 185 108 21 chr5 114035508 114035737 -38501522 - RMER5 LTR ERV1 0 534 281 5 1455 2890 61 237 10 chr5 114035737 114036154 -38501105 - RLTR1B LTR ERV1 0 512 1 5 1455 1303 185 108 21 chr5 114036154 114036211 -38501048 - RMER5 LTR ERV1 -254 280 223 5 1455 360 149 14 9 chr5 114036213 114036326 -38500933 - B2_Mm2 SINE B2 -2 193 47 5 1455 917 86 50 0 chr5 114036386 114036525 -38500734 - B2_Mm2 SINE B2 -48 147 2 5 1455 1647 209 111 95 chr5 114036795 114037362 -38499897 - RMER4B LTR ERVK -8 577 2 6 1455 476 174 156 0 chr5 114037363 114037472 -38499787 - RMER5 LTR ERV1 -387 147 22 5 1455 1419 51 23 6 chr5 114040657 114040833 -38496426 + B2_Mm2 SINE B2 3 181 -14 6 1455 351 128 0 24 chr5 114040861 114040969 -38496290 + B2_Mm2 SINE B2 47 195 0 6 1455 248 248 0 7 chr5 114041532 114041682 -38495577 + CT-rich Low_complexity Low_complexity 2 150 0 6 1455 223 263 0 17 chr5 114041755 114041813 -38495446 + CT-rich Low_complexity Low_complexity 5 61 0 6 1455 1276 69 0 6 chr5 114042154 114042329 -38494930 + B2_Mm2 SINE B2 1 174 -21 6 1455 198 296 42 0 chr5 114042708 114042779 -38494480 - MIRb SINE MIR -140 128 55 6 1455 21 0 0 0 chr5 114043283 114043304 -38493955 + GC_rich Low_complexity Low_complexity 1 21 0 6 1455 525 71 0 0 chr5 114043621 114043691 -38493568 + (TG)n Simple_repeat Simple_repeat 2 71 0 6 1455 2183 78 52 55 chr5 114043999 114044384 -38492875 + ORR1A2 LTR MaLR 1 384 0 6 1455 241 258 53 63 chr5 114044639 114044734 -38492525 + MER20 DNA MER1_type 30 123 -96 7 1455 21 0 0 0 chr5 114045104 114045125 -38492134 + AT_rich Low_complexity Low_complexity 1 21 0 7 1455 800 216 19 0 chr5 114045271 114045433 -38491826 + ID_B1 SINE B4 60 224 0 7 1455 648 267 127 10 chr5 114046002 114046199 -38491060 - ORR1D2 LTR MaLR -4 366 147 7 1455 1592 189 83 58 chr5 114046202 114046612 -38490647 - MTC LTR MaLR -1 420 1 7 1455 481 240 16 8 chr5 114046624 114046750 -38490509 - ORR1D2 LTR MaLR -239 131 5 7 1455 802 202 42 0 chr5 114047509 114047677 -38489582 + B3 SINE B2 1 175 -41 7 1455 627 129 37 35 chr5 114047845 114048289 -38488970 + (TG)n Simple_repeat Simple_repeat 1 445 0 7 1455 443 240 23 36 chr5 114048303 114048448 -38488811 - B3A SINE B2 -27 168 28 7 1455 1176 62 7 0 chr5 114048740 114048885 -38488374 + B1_Mus2 SINE Alu 1 146 -1 7 1455 798 67 0 0 chr5 114048914 114049019 -38488240 + (GAAA)n Simple_repeat Simple_repeat 2 106 0 7 1455 1642 109 0 131 chr5 114049019 114049342 -38487917 - ORR1A3 LTR MaLR -41 285 5 8 1455 697 259 14 66 chr5 114049398 114049609 -38487650 + B3 SINE B2 14 213 -3 8 1455 1049 27 153 7 chr5 114049847 114049997 -38487262 + B2_Mm2 SINE B2 2 173 -22 8 1455 460 242 108 104 chr5 114050015 114050255 -38487004 - ORR1E LTR MaLR -73 286 46 8 1455 636 169 8 0 chr5 114050261 114050385 -38486874 + ORR1B1 LTR MaLR 6 130 -264 8 1455 1809 158 20 73 chr5 114050385 114050794 -38486465 + ORR1B1 LTR MaLR 8 394 0 8 1455 693 146 128 28 chr5 114051504 114051645 -38485614 + RLTR24 LTR ERV1 369 523 -6 8 1455 1918 164 16 80 chr5 114051821 114052259 -38485000 - RMER17C LTR ERVK 0 410 1 8 1455 871 244 42 18 chr5 114052954 114053171 -38484088 - ID_B1 SINE B4 -2 222 1 8 1455 183 42 0 0 chr5 114053874 114053898 -38483361 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1455 312 286 26 26 chr5 114054666 114054781 -38482478 - MTEa LTR MaLR 0 379 265 9 1455 272 247 7 53 chr5 114055021 114055113 -38482146 - ID4 SINE ID -49 103 13 9 1455 753 273 32 3 chr5 114055172 114055381 -38481878 - MTE2b LTR MaLR 0 379 172 9 1455 935 159 7 0 chr5 114055454 114055599 -38481660 + B1_Mus1 SINE Alu 3 148 0 9 1455 735 249 209 42 chr5 114055658 114055830 -38481429 + MTEa LTR MaLR 1 194 -185 9 1455 2034 115 39 51 chr5 114055830 114056161 -38481098 + ORR1A2 LTR MaLR 1 327 0 9 1455 735 249 209 42 chr5 114056161 114056294 -38480965 + MTEa LTR MaLR 195 357 -22 9 1455 499 191 22 0 chr5 114056587 114056676 -38480583 - B3 SINE B2 -9 207 117 9 1455 496 308 0 0 chr5 114057106 114057226 -38480033 - B3 SINE B2 -95 121 2 9 1455 187 216 0 0 chr5 114058538 114058575 -38478684 + MIR SINE MIR 113 149 -59 9 1455 225 284 54 89 chr5 114058709 114058821 -38478438 - L2a LINE L2 -53 3373 3266 9 1455 229 365 48 0 chr5 114058944 114059048 -38478211 - PB1D7 SINE Alu -9 111 3 1 1455 225 0 0 0 chr5 114059867 114059892 -38477367 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 1 1455 457 192 48 0 chr5 114060938 114061175 -38476084 + CT-rich Low_complexity Low_complexity 1 248 0 1 1455 475 269 164 11 chr5 114062460 114062637 -38474622 + MIRb SINE MIR 37 240 -28 1 1455 600 27 0 0 chr5 114062978 114063052 -38474207 + (GGGGA)n Simple_repeat Simple_repeat 2 75 0 1 1455 432 0 0 0 chr5 114063259 114063307 -38473952 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1455 207 315 0 27 chr5 114065088 114065163 -38472096 + (TATG)n Simple_repeat Simple_repeat 1 73 0 1 1455 816 178 0 0 chr5 114065262 114065442 -38471817 + CT-rich Low_complexity Low_complexity 1 180 0 1 1455 516 167 118 0 chr5 114065442 114065544 -38471715 - B1_Mur1 SINE Alu -8 141 28 1 1455 1226 180 234 30 chr5 114065718 114066022 -38471237 + ORR1D1 LTR MaLR 5 370 -4 1 1455 1313 116 21 0 chr5 114066049 114066239 -38471020 + B2_Mm2 SINE B2 2 195 0 1 1455 189 344 55 16 chr5 114066673 114066800 -38470459 - MIRc SINE MIR -134 134 3 1 1455 617 277 26 6 chr5 114066991 114067147 -38470112 + RSINE1 SINE B4 3 161 -4 1 1455 211 240 0 20 chr5 114067210 114067261 -38469998 + PB1D10 SINE Alu 18 67 -50 1 1455 287 339 98 28 chr5 114067469 114067683 -38469576 + MIRb SINE MIR 31 250 -18 1 1455 249 312 0 0 chr5 114068004 114068068 -38469191 + GA-rich Low_complexity Low_complexity 5 68 0 1 1455 194 316 0 12 chr5 114068237 114068410 -38468849 + (TATG)n Simple_repeat Simple_repeat 1 171 0 1 1455 315 263 19 0 chr5 114068466 114068622 -38468637 + (TATG)n Simple_repeat Simple_repeat 3 161 0 1 1455 230 275 14 0 chr5 114068646 114068715 -38468544 + (TATG)n Simple_repeat Simple_repeat 4 73 0 1 1455 306 232 14 0 chr5 114068762 114068831 -38468428 - B4 SINE B4 -218 74 5 1 1455 432 0 0 0 chr5 114068979 114069027 -38468232 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1455 297 381 56 6 chr5 114069588 114069749 -38467510 - MER2 DNA MER2_type -23 322 154 1 1455 207 0 0 0 chr5 114069749 114069772 -38467487 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1455 1110 57 28 14 chr5 114069794 114069937 -38467322 + B1_Mus2 SINE Alu 1 145 -2 1 1455 285 243 80 53 chr5 114069972 114070085 -38467174 - PB1D10 SINE Alu -1 116 1 1 1455 210 98 49 0 chr5 114070204 114070245 -38467014 + (CCCCCA)n Simple_repeat Simple_repeat 2 44 0 1 1455 1290 27 0 0 chr5 114070681 114070827 -38466432 + B1_Mus2 SINE Alu 2 147 0 1 1455 182 253 0 0 chr5 114070851 114070902 -38466357 - MIRc SINE MIR -141 121 71 1 1455 264 349 67 47 chr5 114071166 114071419 -38465840 + L4 LINE RTE 1675 1932 -97 1 1455 2067 157 52 47 chr5 114071700 114072023 -38465236 + ORR1C2 LTR MaLR 1 340 -44 1 1455 1442 84 11 0 chr5 114072023 114072214 -38465045 + B2_Mm1t SINE B2 1 193 0 1 1455 2067 157 52 47 chr5 114072214 114072272 -38464987 + ORR1C2 LTR MaLR 341 384 0 1 1455 180 0 0 0 chr5 114073091 114073111 -38464148 + (G)n Simple_repeat Simple_repeat 1 20 0 1 1455 315 192 28 28 chr5 114073251 114073358 -38463901 + GA-rich Low_complexity Low_complexity 3 109 0 1 1455 273 163 0 0 chr5 114073405 114073454 -38463805 + GA-rich Low_complexity Low_complexity 3 51 0 1 1455 226 176 0 19 chr5 114074451 114074503 -38462756 + L2b LINE L2 3308 3358 -17 1 1455 296 240 65 27 chr5 114074764 114074851 -38462408 + MTEa LTR MaLR 248 336 -43 1 1455 230 224 69 69 chr5 114076691 114076763 -38460496 - MIRm SINE MIR -122 154 83 1 1455 189 288 76 9 chr5 114077151 114077256 -38460003 - MIRb SINE MIR -111 157 46 1 1455 180 0 0 0 chr5 114077572 114077592 -38459667 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1455 184 343 0 0 chr5 114077984 114078054 -38459205 - MIRc SINE MIR -115 153 84 1 1455 442 302 16 23 chr5 114078649 114078778 -38458481 + B1F1 SINE Alu 2 129 -20 1 1455 26 30 0 0 chr5 114079405 114079438 -38457821 + AT_rich Low_complexity Low_complexity 1 33 0 1 1455 278 261 40 25 chr5 114079562 114079667 -38457592 + MIRc SINE MIR 71 177 -99 1 1455 244 308 90 8 chr5 114081308 114081442 -38455817 - L2a LINE L2 -266 3160 3016 1 1455 184 339 44 59 chr5 114081881 114082016 -38455243 - L2b LINE L2 -215 3160 3028 1 1455 628 270 136 86 chr5 114082341 114082817 -38454442 + RLTR18B LTR ERVK 9 616 0 1 1455 349 287 18 18 chr5 114083477 114083587 -38453672 + ID_B1 SINE B4 2 111 -113 1 1455 444 91 0 0 chr5 114083644 114083710 -38453549 + (GA)n Simple_repeat Simple_repeat 2 67 0 1 1455 182 233 0 0 chr5 114085040 114085083 -38452176 - MIRc SINE MIR -113 155 113 1 1455 268 338 55 27 chr5 114088045 114088191 -38449068 - MIR SINE MIR -70 192 43 1 1455 662 325 32 12 chr5 114088528 114088780 -38448479 - B4A SINE B4 -35 257 1 1 1455 225 182 23 0 chr5 114089399 114089443 -38447816 + MIR SINE MIR 76 120 -142 1 1455 423 245 82 36 chr5 114089627 114089737 -38447522 - PB1D10 SINE Alu -1 116 2 1 1455 247 267 0 34 chr5 114090186 114090275 -38446984 + GA-rich Low_complexity Low_complexity 2 87 0 1 1455 761 177 41 26 chr5 114090804 114090978 -38446281 - B3 SINE B2 -9 186 2 1 1455 182 225 0 24 chr5 114091022 114091063 -38446196 - MIR SINE MIR -106 156 117 1 1455 210 71 0 0 chr5 114091350 114091378 -38445881 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 1 1455 429 20 0 0 chr5 114092317 114092367 -38444892 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1455 367 309 31 8 chr5 114092793 114092920 -38444339 + MLT1H LTR MaLR 56 185 -364 1 1455 410 218 0 11 chr5 114092933 114093021 -38444238 + PB1D10 SINE Alu 12 98 -19 1 1455 819 53 0 0 chr5 114093953 114094066 -38443193 + (TG)n Simple_repeat Simple_repeat 1 113 0 1 1455 539 228 101 6 chr5 114094112 114094271 -38442988 + MTE2a LTR MaLR 201 374 -5 1 1455 1131 89 0 0 chr5 114095374 114095520 -38441739 - B1_Mus1 SINE Alu -1 147 2 1 1455 336 321 9 18 chr5 114096545 114096656 -38440603 + PB1 SINE Alu 1 110 -17 1 1455 408 20 0 0 chr5 114096659 114096708 -38440551 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1455 261 40 0 74 chr5 114097020 114097074 -38440185 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 1 1455 997 77 0 14 chr5 114097074 114097219 -38440040 - B1_Mus1 SINE Alu 0 148 6 1 1455 360 349 23 23 chr5 114097645 114097818 -38439441 + B4A SINE B4 79 251 -41 1 1455 576 223 31 0 chr5 114097975 114098105 -38439154 + B4 SINE B4 2 135 -157 1 1455 294 354 32 54 chr5 114098105 114098160 -38439099 + B3A SINE B2 2 182 -16 1 1455 312 342 51 0 chr5 114098182 114098299 -38438960 - MIR SINE MIR -28 234 112 1 1455 186 227 0 83 chr5 114098483 114098531 -38438728 - MIR3 SINE MIR -51 157 114 1 1455 189 276 0 0 chr5 114099032 114099090 -38438169 + MIRc SINE MIR 69 126 -142 1 1455 412 232 0 10 chr5 114099111 114099207 -38438052 + B4A SINE B4 132 226 -66 1 1455 714 234 67 34 chr5 114099362 114099570 -38437689 + B3 SINE B2 2 216 0 1 1455 732 78 0 0 chr5 114099574 114099676 -38437583 - B1_Mur4 SINE Alu -8 142 41 1 1455 319 196 56 93 chr5 114099601 114099708 -38437551 - MT2B LTR ERVL -337 264 162 1 1455 481 266 62 0 chr5 114101084 114101212 -38436047 - MIR SINE MIR -99 163 28 1 1455 332 291 86 20 chr5 114101487 114101565 -38435694 + HAL1-3A_ME LINE L1 2284 2360 -498 1 1455 1126 92 6 11 chr5 114101565 114101740 -38435519 + (GGAGA)n Simple_repeat Simple_repeat 1 174 0 1 1455 332 312 93 9 chr5 114101740 114101897 -38435362 + HAL1-3A_ME LINE L1 2284 2443 -415 1 1455 321 179 17 43 chr5 114101900 114102017 -38435242 + G-rich Low_complexity Low_complexity 2 115 0 1 1455 230 175 17 34 chr5 114102830 114102889 -38434370 - ORR1D1-int LTR MaLR -159 1211 1154 1 1455 1250 164 205 29 chr5 114102889 114103294 -38433965 - ORR1D1-int LTR MaLR -188 1321 821 1 1455 2121 220 46 58 chr5 114103284 114103622 -38433637 - ORR1D1-int LTR MaLR -774 596 272 1 1455 1439 74 11 0 chr5 114103622 114103811 -38433448 + B2_Mm1t SINE B2 1 191 -2 1 1455 2121 220 46 58 chr5 114103811 114104075 -38433184 - ORR1D1-int LTR MaLR -1099 271 1 1 1455 478 198 0 1 chr5 114104076 114104163 -38433096 - ORR1D1 LTR MaLR -1 373 288 1 1455 180 0 0 0 chr5 114104163 114104183 -38433076 + (G)n Simple_repeat Simple_repeat 1 20 0 1 1455 403 259 78 51 chr5 114104183 114104250 -38433009 - ORR1D1 LTR MaLR -101 318 253 1 1455 239 217 151 11 chr5 114104291 114104384 -38432875 - MIR SINE MIR -93 169 64 1 1455 307 265 48 90 chr5 114104525 114104544 -38432715 + B4A SINE B4 67 147 -145 1 1455 396 245 0 78 chr5 114104544 114104562 -38432697 + MT2B LTR ERVL 152 160 -441 1 1455 838 43 51 0 chr5 114104562 114104679 -38432580 + B1_Mus1 SINE Alu 1 123 -25 1 1455 307 265 48 90 chr5 114104659 114104670 -38432589 + B4A SINE B4 148 205 -87 1 1455 204 125 0 0 chr5 114104679 114104711 -38432548 + (AGGGGG)n Simple_repeat Simple_repeat 1 32 0 1 1455 24 0 0 0 chr5 114105142 114105166 -38432093 + AT_rich Low_complexity Low_complexity 1 24 0 1 1455 394 251 94 12 chr5 114105480 114105626 -38431633 + MIR SINE MIR 1 154 -108 1 1455 582 336 41 24 chr5 114105637 114105927 -38431332 - MLT1A0 LTR MaLR -1 364 70 1 1455 385 276 8 26 chr5 114106122 114106237 -38431022 + PB1D10 SINE Alu 9 122 -192 1 1455 234 270 0 0 chr5 114106424 114106498 -38430761 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 1 1455 2115 152 92 0 chr5 114106504 114106885 -38430374 + MTC LTR MaLR 6 421 0 1 1455 1080 133 0 0 chr5 114106895 114107120 -38430139 + (TGGA)n Simple_repeat Simple_repeat 1 225 0 1 1455 853 166 0 12 chr5 114107135 114107236 -38430023 + (TGGG)n Simple_repeat Simple_repeat 1 101 0 1 1455 1347 106 0 0 chr5 114107236 114107416 -38429843 + (TGGA)n Simple_repeat Simple_repeat 1 183 -185 1 1455 853 166 0 12 chr5 114107416 114107424 -38429835 + (TGGG)n Simple_repeat Simple_repeat 1 8 0 1 1455 1347 106 0 0 chr5 114107424 114107604 -38429655 + (TGGA)n Simple_repeat Simple_repeat 184 368 0 1 1455 853 166 0 12 chr5 114107604 114107664 -38429595 + (TGGG)n Simple_repeat Simple_repeat 1 60 0 1 1455 1221 113 0 0 chr5 114107664 114107885 -38429374 + (TGGA)n Simple_repeat Simple_repeat 1 221 0 1 1455 413 257 7 0 chr5 114107945 114108097 -38429162 + (TGGA)n Simple_repeat Simple_repeat 1 153 0 1 1455 624 137 0 0 chr5 114108407 114108509 -38428750 + (A)n Simple_repeat Simple_repeat 1 102 0 1 1455 27 0 0 0 chr5 114109148 114109175 -38428084 + AT_rich Low_complexity Low_complexity 1 27 0 1 1455 429 234 0 0 chr5 114109182 114109289 -38427970 + L1MB8 LINE L1 5186 5292 -854 1 1455 508 269 131 10 chr5 114109628 114109863 -38427396 + L1MB8 LINE L1 5592 5856 -318 1 1455 688 280 62 35 chr5 114109878 114110137 -38427122 + L1MB8 LINE L1 5908 6173 -5 1 1455 803 164 55 30 chr5 114110180 114110367 -38426892 + B3 SINE B2 1 192 -6 2 1455 328 273 90 9 chr5 114111649 114111760 -38425499 + PB1D7 SINE Alu 1 120 0 2 1455 212 232 125 0 chr5 114112220 114112276 -38424983 - ID4_ SINE ID -19 64 2 2 1455 342 0 0 0 chr5 114112288 114112326 -38424933 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 2 1455 491 220 193 17 chr5 114112839 114113015 -38424244 - B4A SINE B4 -19 273 67 2 1455 1930 205 42 16 chr5 114113210 114113665 -38423594 + RLTR11A LTR ERVK 17 528 0 2 1455 289 292 143 23 chr5 114113653 114113808 -38423451 - B3 SINE B2 -3 195 27 2 1455 189 0 0 0 chr5 114113814 114113835 -38423424 + (CTTG)n Simple_repeat Simple_repeat 1 21 0 2 1455 279 297 19 19 chr5 114114190 114114293 -38422966 - Charlie20a DNA Charlie -146 661 559 2 1455 22 0 0 0 chr5 114114451 114114473 -38422786 + AT_rich Low_complexity Low_complexity 1 22 0 2 1455 389 303 101 80 chr5 114115032 114115216 -38422043 + L1MA6 LINE L1 5870 6062 -238 2 1455 386 291 35 28 chr5 114115216 114115361 -38421898 + B1F2 SINE Alu 1 146 -3 2 1455 389 303 101 80 chr5 114115361 114115574 -38421685 + L1MA6 LINE L1 6063 6275 -25 2 1455 450 171 0 47 chr5 114115728 114115814 -38421445 - RSINE1 SINE B4 -36 129 48 2 1455 312 27 0 0 chr5 114115980 114116017 -38421242 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1455 324 170 31 21 chr5 114116023 114116119 -38421140 + (TATG)n Simple_repeat Simple_repeat 3 99 0 2 1455 1126 178 5 9 chr5 114116135 114116350 -38420909 - B3 SINE B2 0 216 3 2 1455 441 225 65 40 chr5 114116351 114116518 -38420741 - MTE2a LTR MaLR -213 206 40 2 1455 390 204 0 0 chr5 114116661 114116769 -38420490 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 1455 378 0 0 0 chr5 114116869 114116911 -38420348 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1455 529 301 40 20 chr5 114116989 114117189 -38420070 - B4A SINE B4 -86 206 3 2 1455 732 197 7 14 chr5 114117228 114117372 -38419887 + B1_Mur1 SINE Alu 7 149 0 2 1455 1247 50 0 0 chr5 114117623 114117784 -38419475 + B2_Mm2 SINE B2 1 161 -34 2 1455 309 51 0 0 chr5 114117784 114117823 -38419436 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 2 1455 387 60 0 0 chr5 114117828 114117878 -38419381 + (GGA)n Simple_repeat Simple_repeat 2 51 0 2 1455 441 264 39 71 chr5 114117973 114118128 -38419131 + B3A SINE B2 47 196 -2 2 1455 441 0 0 0 chr5 114118247 114118296 -38418963 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1455 414 307 7 28 chr5 114118404 114118545 -38418714 + MLT1A0 LTR MaLR 222 359 -6 2 1455 1599 252 50 30 chr5 114118764 114119223 -38418036 - Lx8 LINE L1 -777 6696 6229 2 1455 1257 26 18 16 chr5 114119264 114119455 -38417804 + (TAGA)n Simple_repeat Simple_repeat 1 191 0 2 1455 696 107 0 0 chr5 114119455 114119558 -38417701 + (TGGA)n Simple_repeat Simple_repeat 3 105 0 2 1455 279 109 47 0 chr5 114119558 114119614 -38417645 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 2 1455 593 137 42 0 chr5 114119632 114119800 -38417459 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 2 1455 277 162 29 0 chr5 114119829 114119897 -38417362 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1455 225 312 53 21 chr5 114120036 114120131 -38417128 - Lx9 LINE L1 -1670 5974 5877 2 1455 927 222 170 32 chr5 114120146 114120458 -38416801 - Lx9 LINE L1 -64 5783 5429 2 1455 1350 65 22 0 chr5 114120462 114120646 -38416613 - B2_Mm2 SINE B2 -7 188 1 2 1455 832 292 95 31 chr5 114120661 114121113 -38416146 - L1_Mur3 LINE L1 -735 5145 4665 2 1455 996 133 0 0 chr5 114121162 114121342 -38415917 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1455 702 202 0 0 chr5 114121470 114121648 -38415611 + (TG)n Simple_repeat Simple_repeat 1 178 0 2 1455 364 174 50 140 chr5 114121648 114121748 -38415511 - RSINE1 SINE B4 0 165 75 2 1455 558 337 49 55 chr5 114123095 114123443 -38413816 - ORR1E LTR MaLR -13 346 1 2 1455 257 254 0 95 chr5 114123494 114123568 -38413691 - ID_B1 SINE B4 -21 203 137 2 1455 285 233 0 16 chr5 114123587 114123648 -38413611 - ID4 SINE ID -21 62 3 2 1455 186 43 0 0 chr5 114123881 114123904 -38413355 + (GGGA)n Simple_repeat Simple_repeat 2 24 0 2 1455 1116 133 0 0 chr5 114123906 114124086 -38413173 + (GA)n Simple_repeat Simple_repeat 1 180 0 2 1455 225 211 0 0 chr5 114124086 114124138 -38413121 + GA-rich Low_complexity Low_complexity 1 52 0 2 1455 1003 130 0 17 chr5 114124138 114124318 -38412941 + (GGGA)n Simple_repeat Simple_repeat 3 179 0 2 1455 1120 69 0 0 chr5 114124418 114124563 -38412696 - B1_Mus1 SINE Alu -3 145 1 2 1455 746 288 8 21 chr5 114125339 114125573 -38411686 + B4A SINE B4 1 231 -61 2 1455 530 233 40 5 chr5 114125575 114125743 -38411516 + B3A SINE B2 5 181 -14 2 1455 470 159 150 0 chr5 114125765 114125878 -38411381 + B3 SINE B2 1 130 -86 2 1455 573 115 0 0 chr5 114126427 114126514 -38410745 + (CA)n Simple_repeat Simple_repeat 1 87 0 2 1455 2096 75 3 16 chr5 114126713 114127063 -38410196 + ORR1A2 LTR MaLR 4 333 -13 2 1455 192 256 0 0 chr5 114127071 114127114 -38410145 - L2a LINE L2 -42 3384 3342 2 1455 273 111 75 3 chr5 114127232 114127298 -38409961 - MTD LTR MaLR 0 421 344 2 1455 353 173 40 13 chr5 114127341 114127417 -38409842 + 7SK RNA RNA 4 81 -250 2 1455 255 177 0 0 chr5 114127554 114127616 -38409643 + G-rich Low_complexity Low_complexity 1 62 0 2 1455 1116 44 0 0 chr5 114127842 114127978 -38409281 + B1_Mus2 SINE Alu 2 137 -10 2 1455 216 0 0 0 chr5 114127978 114128002 -38409257 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1455 956 292 25 79 chr5 114128053 114128495 -38408764 + RMER5 LTR ERV1 61 478 -56 2 1455 2939 60 2 57 chr5 114129064 114129487 -38407772 + MTB LTR MaLR 1 400 0 2 1455 283 303 20 101 chr5 114129952 114130051 -38407208 - MLT1A1 LTR MaLR -49 359 227 2 1455 1445 199 97 12 chr5 114130146 114130327 -38406932 - ORR1C2 LTR MaLR 0 384 188 2 1455 405 0 0 0 chr5 114130327 114130372 -38406887 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1455 1445 199 97 12 chr5 114130372 114130521 -38406738 - ORR1C2 LTR MaLR -197 187 26 2 1455 2040 113 93 98 chr5 114130521 114130917 -38406342 + RMER6A LTR ERVK 1 374 -382 2 1455 327 49 0 0 chr5 114130917 114130958 -38406301 + (GA)n Simple_repeat Simple_repeat 1 41 0 2 1455 2040 113 93 98 chr5 114130958 114131012 -38406247 + RMER6A LTR ERVK 375 448 -308 2 1455 382 209 31 94 chr5 114131055 114131182 -38406077 + B3A SINE B2 80 198 0 2 1455 224 184 224 0 chr5 114131754 114131830 -38405429 + MIRb SINE MIR 74 166 -102 2 1455 438 209 71 26 chr5 114132250 114132363 -38404896 - PB1D9 SINE Alu 0 120 3 2 1455 217 287 67 22 chr5 114132402 114132491 -38404768 + MIRb SINE MIR 18 110 -98 2 1455 200 31 62 0 chr5 114132553 114132585 -38404674 + (CAGAGA)n Simple_repeat Simple_repeat 2 35 0 2 1455 225 267 67 25 chr5 114133270 114133389 -38403870 - MLT1A1 LTR MaLR -16 392 269 2 1455 1019 274 58 17 chr5 114133601 114133961 -38403298 - MTE2b LTR MaLR -4 375 1 2 1455 653 183 120 0 chr5 114134702 114134844 -38402415 + B3 SINE B2 1 159 -57 2 1455 345 24 0 0 chr5 114135147 114135189 -38402070 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1455 1406 160 0 141 chr5 114135189 114135510 -38401749 - MTC LTR MaLR -128 293 19 2 1455 657 316 168 21 chr5 114135543 114136008 -38401251 + MLT1F-int LTR MaLR 394 926 -563 2 1455 303 334 33 0 chr5 114136028 114136118 -38401141 + PB1D10 SINE Alu 12 101 -48 2 1455 318 236 11 49 chr5 114136166 114136349 -38400910 + G-rich Low_complexity Low_complexity 5 180 0 2 1455 411 335 99 55 chr5 114136372 114136625 -38400634 + MLT1F-int LTR MaLR 914 1177 -312 2 1455 1433 150 70 175 chr5 114136731 114137160 -38400099 - ORR1C2 LTR MaLR 0 384 1 2 1455 640 270 102 0 chr5 114137334 114137530 -38399729 - ID_B1 SINE B4 -5 219 4 2 1455 508 240 0 0 chr5 114137625 114137746 -38399513 + ORR1A2 LTR MaLR 1 121 -225 2 1455 2018 101 7 10 chr5 114137730 114138031 -38399228 + ORR1A2 LTR MaLR 28 327 0 2 1455 600 280 11 33 chr5 114138033 114138214 -38399045 + B4A SINE B4 115 291 -1 2 1455 379 247 0 28 chr5 114138236 114138415 -38398844 + (CA)n Simple_repeat Simple_repeat 1 174 0 2 1455 420 227 0 33 chr5 114138455 114138637 -38398622 + (CA)n Simple_repeat Simple_repeat 2 177 0 2 1455 275 271 74 9 chr5 114139215 114139323 -38397936 - L2b LINE L2 -32 3343 3229 2 1455 1073 93 0 0 chr5 114139706 114139856 -38397403 + B2_Mm2 SINE B2 4 153 -42 2 1455 363 146 39 68 chr5 114139859 114139962 -38397297 + B2_Mm2 SINE B2 2 101 -94 2 1455 444 37 0 0 chr5 114139982 114140036 -38397223 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 2 1455 830 246 77 29 chr5 114140601 114140810 -38396449 - B4 SINE B4 -73 219 1 2 1455 331 316 0 55 chr5 114140974 114141155 -38396104 + (TG)n Simple_repeat Simple_repeat 2 172 0 2 1455 317 214 0 44 chr5 114141190 114141327 -38395932 + (TG)n Simple_repeat Simple_repeat 2 132 0 2 1455 311 293 8 39 chr5 114141350 114141478 -38395781 + (TG)n Simple_repeat Simple_repeat 1 124 0 2 1455 375 240 2 28 chr5 114141480 114141589 -38395670 - B3A SINE B2 -14 202 95 2 1455 332 320 53 76 chr5 114141950 114142214 -38395045 - MLT1D LTR MaLR -189 316 59 2 1455 1124 68 0 0 chr5 114142284 114142431 -38394828 - B1_Mus2 SINE Alu 0 147 1 2 1455 2493 184 48 28 chr5 114142610 114142986 -38394273 - Lx9 LINE L1 -453 7191 6810 2 1455 1289 96 5 0 chr5 114142986 114143174 -38394085 - B2_Mm1a SINE B2 -3 190 2 2 1455 2493 184 48 28 chr5 114143174 114143335 -38393924 - Lx9 LINE L1 -835 6809 6643 2 1455 218 246 0 124 chr5 114143565 114143718 -38393541 + G-rich Low_complexity Low_complexity 4 137 0 2 1455 1597 323 119 76 chr5 114143736 114144087 -38393172 + RMER15-int LTR ERVL 2024 2376 -2623 2 1455 579 275 129 72 chr5 114144087 114144350 -38392909 + B4A SINE B4 1 278 -14 2 1455 1597 323 119 76 chr5 114144350 114145824 -38391435 + RMER15-int LTR ERVL 2377 3927 -1072 2 1455 1964 85 18 161 chr5 114145879 114146259 -38391000 - ORR1A2 LTR MaLR -1 326 1 2 1455 569 262 27 7 chr5 114146259 114146409 -38390850 + RMER15-int LTR ERVL 4179 4331 -668 2 1455 388 208 168 46 chr5 114146863 114146994 -38390265 + B1F SINE Alu 3 149 0 2 1455 1173 29 0 0 chr5 114147022 114147162 -38390097 + B1_Mus1 SINE Alu 2 141 -7 2 1455 213 39 0 0 chr5 114147166 114147192 -38390067 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2 1455 368 335 26 60 chr5 114147274 114147506 -38389753 + Lx8 LINE L1 6846 7069 -404 3 1455 1155 60 0 0 chr5 114148673 114148823 -38388436 + B2_Mm2 SINE B2 2 151 -44 3 1455 306 0 0 0 chr5 114148826 114148860 -38388399 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 3 1455 666 194 31 0 chr5 114148936 114149065 -38388194 + RSINE1 SINE B4 2 134 -31 3 1455 384 22 0 0 chr5 114149068 114149113 -38388146 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1455 364 253 12 0 chr5 114149134 114149217 -38388042 + B4 SINE B4 1 84 -208 3 1455 634 161 329 0 chr5 114149244 114149399 -38387860 + B3 SINE B2 2 207 -9 3 1455 237 178 0 0 chr5 114149403 114149448 -38387811 + (TATG)n Simple_repeat Simple_repeat 4 48 0 3 1455 246 285 106 15 chr5 114149483 114149615 -38387644 + B4A SINE B4 103 246 -46 3 1455 439 288 25 0 chr5 114149811 114149928 -38387331 - MT2A LTR ERVL -119 414 295 3 1455 2267 166 88 15 chr5 114149928 114150405 -38386854 - RMER5 LTR ERV1 0 534 23 3 1455 305 301 91 81 chr5 114150424 114150634 -38386625 - MT2A LTR ERVL -235 298 87 3 1455 207 0 0 0 chr5 114151221 114151244 -38386015 + (CCA)n Simple_repeat Simple_repeat 2 24 0 3 1455 1013 208 24 5 chr5 114151343 114151551 -38385708 + MTD LTR MaLR 5 216 -203 3 1455 275 194 16 0 chr5 114151577 114151639 -38385620 + MTD LTR MaLR 328 390 -31 3 1455 577 175 0 48 chr5 114151689 114151815 -38385444 + B1_Mus1 SINE Alu 6 125 -23 3 1455 269 301 69 83 chr5 114152520 114152737 -38384522 + MLT1C LTR MaLR 51 264 -203 3 1455 928 57 0 8 chr5 114152751 114152875 -38384384 + B2_Mm2 SINE B2 1 123 -72 3 1455 762 43 0 0 chr5 114153151 114153245 -38384014 + (TC)n Simple_repeat Simple_repeat 2 95 0 3 1455 531 0 0 0 chr5 114153245 114153303 -38383956 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1455 1050 62 7 27 chr5 114153303 114153453 -38383806 - B1_Mus1 SINE Alu -1 147 1 3 1455 189 0 0 0 chr5 114154192 114154213 -38383046 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1455 21 36 0 0 chr5 114155072 114155100 -38382159 + AT_rich Low_complexity Low_complexity 1 28 0 3 1455 316 273 109 54 chr5 114155100 114155247 -38382012 - RSINE1 SINE B4 -10 155 1 3 1455 555 138 49 19 chr5 114155959 114156121 -38381138 + CT-rich Low_complexity Low_complexity 1 167 0 3 1455 345 192 64 0 chr5 114156278 114156356 -38380903 + ID4_ SINE ID 1 83 0 3 1455 260 321 35 62 chr5 114156437 114156534 -38380725 - MLT1K LTR MaLR -354 241 148 3 1455 1193 55 42 0 chr5 114156534 114156699 -38380560 + B2_Mm2 SINE B2 1 172 -23 3 1455 264 59 0 0 chr5 114156701 114156735 -38380524 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1455 474 220 314 0 chr5 114156934 114157093 -38380166 - B3 SINE B2 0 216 8 3 1455 722 304 61 0 chr5 114157099 114157313 -38379946 - B4 SINE B4 -61 231 5 3 1455 321 208 14 14 chr5 114157312 114157385 -38379874 + MER58C DNA MER1_type 142 214 -1 3 1455 947 92 0 7 chr5 114158024 114158166 -38379093 - B1_Mus1 SINE Alu 0 148 8 3 1455 742 277 24 0 chr5 114158171 114158384 -38378875 - ID_B1 SINE B4 -3 221 4 3 1455 439 295 88 28 chr5 114158521 114158737 -38378522 - B4A SINE B4 -62 230 2 3 1455 852 237 42 33 chr5 114158755 114158785 -38378474 - B3 SINE B2 0 216 191 3 1455 396 0 0 0 chr5 114158785 114158829 -38378430 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1455 852 237 42 33 chr5 114158829 114159012 -38378247 - B3 SINE B2 -26 190 1 3 1455 738 208 48 54 chr5 114159017 114159048 -38378211 - B3A SINE B2 -18 177 149 3 1455 1249 43 9 0 chr5 114159048 114159279 -38377980 + (TG)n Simple_repeat Simple_repeat 1 233 0 3 1455 738 195 40 13 chr5 114159279 114159417 -38377842 - B3A SINE B2 -44 154 12 3 1455 279 280 35 70 chr5 114159420 114159535 -38377724 - PB1D7 SINE Alu -7 113 3 3 1455 226 342 13 0 chr5 114159541 114159620 -38377639 - B4A SINE B4 -212 80 1 3 1455 264 95 0 0 chr5 114159846 114159888 -38377371 - MamGypLTR1b LTR Gypsy -740 42 1 3 1455 217 147 0 0 chr5 114160072 114160106 -38377153 + L2c LINE L2 3339 3372 -15 3 1455 256 311 155 40 chr5 114160774 114161149 -38376110 + L2a LINE L2 2934 3351 -75 3 1455 1002 47 0 0 chr5 114161524 114161651 -38375608 + B2_Mm2 SINE B2 2 128 -67 3 1455 202 291 48 60 chr5 114162057 114162141 -38375118 - MIRb SINE MIR -71 197 115 3 1455 1904 110 7 3 chr5 114162409 114162701 -38374558 - RLTR9D LTR ERVK 0 403 111 3 1455 1396 104 169 14 chr5 114162790 114163077 -38374182 - ORR1A2 LTR MaLR 0 329 8 3 1455 475 185 0 0 chr5 114163105 114163213 -38374046 - ORR1A1 LTR MaLR -238 108 1 3 1455 323 261 87 0 chr5 114163347 114163439 -38373820 - HAL1-3A_ME LINE L1 -783 2075 1976 3 1455 342 300 0 0 chr5 114163443 114163583 -38373676 + (TG)n Simple_repeat Simple_repeat 2 141 0 3 181 384 239 8 114 chr5 114163642 114163765 -38373494 - RSINE1 SINE B4 0 165 56 3 1456 1284 69 29 0 chr5 114163816 114163991 -38373268 - B2_Mm2 SINE B2 -14 181 2 3 1456 534 272 70 62 chr5 114164317 114164560 -38372699 - B4A SINE B4 -39 253 9 3 1456 216 0 0 0 chr5 114164638 114164662 -38372597 + (TTTG)n Simple_repeat Simple_repeat 3 26 0 3 1456 934 156 39 11 chr5 114164692 114164874 -38372385 + B2_Mm2 SINE B2 2 188 -7 3 1456 353 260 158 67 chr5 114164957 114165145 -38372114 - Lx9 LINE L1 -26 7618 7428 3 1456 405 70 0 0 chr5 114165145 114165202 -38372057 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1456 353 260 158 67 chr5 114165202 114165343 -38371916 - Lx9 LINE L1 -217 7427 7259 3 1456 467 193 18 27 chr5 114165643 114165755 -38371504 + MIR SINE MIR 33 143 -65 3 1456 366 185 0 0 chr5 114166064 114166145 -38371114 + GA-rich Low_complexity Low_complexity 1 81 0 3 1456 360 0 0 0 chr5 114166261 114166301 -38370958 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1456 224 274 0 27 chr5 114166865 114166940 -38370319 + G-rich Low_complexity Low_complexity 5 77 0 3 1456 232 189 19 19 chr5 114166885 114166939 -38370320 + GA-rich Low_complexity Low_complexity 2 55 0 3 1456 1727 135 42 55 chr5 114167211 114167415 -38369844 + RMER17C LTR ERVK 1 195 -215 3 1456 198 0 0 0 chr5 114167415 114167437 -38369822 + (CTAG)n Simple_repeat Simple_repeat 1 22 0 3 1456 1727 135 42 55 chr5 114167437 114167616 -38369643 + RMER17C LTR ERVK 196 379 -31 3 1456 1124 97 7 0 chr5 114167620 114167765 -38369494 + B1_Mus1 SINE Alu 2 147 -1 3 1456 300 376 22 22 chr5 114167994 114168130 -38369129 + B1F SINE Alu 1 136 -13 3 1456 371 296 12 114 chr5 114168148 114168334 -38368925 + B4A SINE B4 1 183 -109 3 1456 1195 194 191 3 chr5 114168334 114168649 -38368610 - ORR1D1 LTR MaLR 0 374 1 3 1456 280 299 102 97 chr5 114168649 114168688 -38368571 + B4 SINE B4 184 226 -66 3 1456 369 317 5 62 chr5 114168768 114168963 -38368296 + B3A SINE B2 1 184 -14 3 1456 648 188 29 0 chr5 114170210 114170380 -38366879 + (CATA)n Simple_repeat Simple_repeat 4 178 0 3 1456 767 179 6 0 chr5 114170354 114170533 -38366726 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1456 325 292 146 0 chr5 114170672 114170843 -38366416 + L1MC4 LINE L1 6886 7081 -961 3 1456 842 161 21 35 chr5 114170885 114171027 -38366232 + B1_Mur2 SINE Alu 1 140 -9 3 1456 504 0 0 0 chr5 114171027 114171083 -38366176 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 3 1456 913 195 82 0 chr5 114171134 114171329 -38365930 - B3 SINE B2 -3 213 3 3 1456 471 308 166 23 chr5 114171351 114171717 -38365542 + L1MB1 LINE L1 5523 5938 -365 3 1456 243 239 0 0 chr5 114171721 114171788 -38365471 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 3 1456 221 306 0 0 chr5 114171801 114171850 -38365409 + (CATG)n Simple_repeat Simple_repeat 1 49 0 3 1456 428 234 0 46 chr5 114171856 114172031 -38365228 + (TATATG)n Simple_repeat Simple_repeat 6 172 0 3 1456 366 269 8 24 chr5 114172042 114172301 -38364958 + (TATATG)n Simple_repeat Simple_repeat 1 254 0 3 1456 239 250 112 0 chr5 114172408 114172456 -38364803 + B3 SINE B2 117 169 -47 3 1456 333 0 0 0 chr5 114172456 114172493 -38364766 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1456 239 250 112 0 chr5 114172493 114172524 -38364735 + B3 SINE B2 170 204 -12 3 1456 321 26 0 0 chr5 114172648 114172686 -38364573 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1456 446 235 102 51 chr5 114172711 114172868 -38364391 + ID_B1 SINE B4 59 223 -1 3 1456 281 278 28 11 chr5 114172916 114173025 -38364234 + L1MC4 LINE L1 7559 7671 -211 3 1456 406 277 21 154 chr5 114173112 114173300 -38363959 + MER3 DNA MER1_type 12 174 -35 3 1456 853 51 0 17 chr5 114173297 114173416 -38363843 + B1_Mus2 SINE Alu 31 147 0 3 1456 339 143 0 0 chr5 114174964 114175020 -38362239 + Lx9 LINE L1 7428 7483 -161 3 1456 1341 73 11 22 chr5 114175042 114175223 -38362036 + B2_Mm1t SINE B2 1 179 -14 3 1456 339 72 319 44 chr5 114175255 114175368 -38361891 + B2_Mm2 SINE B2 47 190 -5 3 1456 222 244 230 11 chr5 114176371 114176458 -38360801 + L2a LINE L2 3320 3425 -1 3 1456 241 320 184 11 chr5 114176504 114176678 -38360581 - MLT1H LTR MaLR -13 536 333 3 1456 262 241 11 54 chr5 114177092 114177184 -38360075 - Lx8 LINE L1 -7 7466 7379 3 1456 278 361 60 0 chr5 114178197 114178363 -38358896 + LTR33A_ LTR ERVL 286 461 -70 3 1456 214 315 33 33 chr5 114178424 114178516 -38358743 + L2 LINE L2 2817 2908 -511 3 1456 599 285 28 34 chr5 114178927 114179105 -38358154 + ID_B1 SINE B4 2 178 -46 3 1456 1102 100 6 0 chr5 114179211 114179371 -38357888 + B2_Mm1t SINE B2 3 163 -30 3 1456 267 109 442 0 chr5 114179426 114179528 -38357731 + B2_Mm2 SINE B2 47 193 -2 3 1456 216 184 0 0 chr5 114179528 114179577 -38357682 + GA-rich Low_complexity Low_complexity 1 49 0 3 1456 1002 80 0 0 chr5 114179587 114179724 -38357535 + (GAAA)n Simple_repeat Simple_repeat 3 139 0 3 1456 1218 103 10 15 chr5 114179724 114179910 -38357349 - MTC LTR MaLR -125 296 110 3 1456 1254 48 0 0 chr5 114179911 114180057 -38357202 + B1_Mm SINE Alu 1 146 -1 3 1456 435 119 0 0 chr5 114180059 114180126 -38357133 + (A)n Simple_repeat Simple_repeat 1 67 0 3 1456 666 160 8 25 chr5 114180126 114180248 -38357011 - MTC LTR MaLR -301 120 1 3 1456 352 171 0 8 chr5 114181349 114181419 -38355840 - PB1D9 SINE Alu -84 66 1 3 1456 1198 75 0 0 chr5 114181648 114181795 -38355464 + B1_Mm SINE Alu 1 147 0 4 1456 186 43 0 0 chr5 114181796 114181819 -38355440 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1456 655 112 18 36 chr5 114181831 114181942 -38355317 + B2_Mm2 SINE B2 4 112 -83 4 1456 594 95 12 0 chr5 114181916 114182000 -38355259 - B2_Mm2 SINE B2 -108 87 3 4 1456 712 178 163 112 chr5 114183183 114183219 -38354040 - URR1A DNA MER1_type 0 226 195 4 1456 4266 76 27 36 chr5 114183219 114183382 -38353877 + MT2B2 LTR ERVL 2 166 -418 4 1456 1457 64 5 11 chr5 114183382 114183571 -38353688 + B2_Mm2 SINE B2 1 188 -7 4 1456 1172 58 0 0 chr5 114183573 114183712 -38353547 + B1_Mm SINE Alu 2 140 -7 4 1456 839 118 0 7 chr5 114183715 114183851 -38353408 + (GAAA)n Simple_repeat Simple_repeat 2 136 0 4 1456 4266 76 27 36 chr5 114183851 114184268 -38352991 + MT2B2 LTR ERVL 167 584 0 4 1456 712 178 163 112 chr5 114184268 114184446 -38352813 - URR1A DNA MER1_type -32 194 1 4 1456 948 75 98 24 chr5 114184448 114184612 -38352647 + MTC LTR MaLR 35 210 -211 4 1456 525 239 53 0 chr5 114184612 114184725 -38352534 + B1F2 SINE Alu 1 119 -30 4 1456 259 203 48 60 chr5 114184734 114184818 -38352441 - MIR SINE MIR -146 116 34 4 1456 22 0 0 0 chr5 114184964 114184986 -38352273 + AT_rich Low_complexity Low_complexity 1 22 0 4 1456 191 250 108 36 chr5 114185022 114185105 -38352154 - MIR SINE MIR -161 101 13 4 1456 290 217 17 0 chr5 114185275 114185335 -38351924 + B1F SINE Alu 66 126 -23 4 1456 225 256 35 58 chr5 114185303 114185390 -38351869 + B1_Mur1 SINE Alu 65 149 0 4 1456 202 312 93 51 chr5 114186030 114186148 -38351111 + MIRb SINE MIR 132 254 -14 4 1456 232 208 51 77 chr5 114187617 114187695 -38349564 + ID4 SINE ID 8 83 0 4 1456 21 0 0 0 chr5 114189315 114189336 -38347923 + AT_rich Low_complexity Low_complexity 1 21 0 4 1456 834 204 50 6 chr5 114191434 114191616 -38345643 + B3 SINE B2 1 190 -26 4 1456 31 58 0 0 chr5 114191625 114191677 -38345582 + AT_rich Low_complexity Low_complexity 1 52 0 4 1456 379 290 83 0 chr5 114191685 114191830 -38345429 + RSINE1 SINE B4 3 159 -6 4 1456 357 136 18 0 chr5 114191841 114191915 -38345344 + B3A SINE B2 7 82 -134 4 1456 427 33 0 32 chr5 114192369 114192432 -38344827 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1456 1189 153 55 0 chr5 114193932 114194134 -38343125 + B3 SINE B2 1 213 -3 4 1456 583 253 92 6 chr5 114194152 114194315 -38342944 + MTB LTR MaLR 181 357 -43 4 1456 208 362 0 21 chr5 114196632 114196773 -38340486 + CT-rich Low_complexity Low_complexity 3 140 0 4 1456 579 266 105 28 chr5 114196985 114197233 -38340026 - MTE2a LTR MaLR -17 362 96 4 1456 235 133 133 0 chr5 114197200 114197245 -38340014 - MT2A LTR ERVL -405 128 78 4 1456 374 283 122 43 chr5 114197324 114197579 -38339680 - Lx8 LINE L1 -39 7434 7160 4 1456 772 172 154 0 chr5 114197704 114197873 -38339386 + B3 SINE B2 1 195 -21 4 1456 736 212 94 6 chr5 114199720 114199900 -38337359 + B3 SINE B2 2 197 -19 4 1456 683 202 0 8 chr5 114199912 114200032 -38337227 + PB1D9 SINE Alu 1 119 -1 4 1456 542 53 0 0 chr5 114200122 114200198 -38337061 - B1_Mur4 SINE Alu 0 150 75 4 1456 1277 108 27 16 chr5 114200230 114200418 -38336841 + B2_Mm2 SINE B2 2 191 -4 4 1456 260 222 129 47 chr5 114200722 114200807 -38336452 + B1F SINE Alu 15 106 -43 4 1456 183 100 0 0 chr5 114202171 114202201 -38335058 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 4 1456 485 272 123 4 chr5 114202801 114203033 -38334226 + MTE2b LTR MaLR 16 379 0 4 1456 575 249 49 160 chr5 114203248 114203554 -38333705 + B4A SINE B4 19 290 -2 4 1456 368 290 147 61 chr5 114204430 114204757 -38332502 + ORR1E LTR MaLR 1 355 -4 4 1456 396 278 44 53 chr5 114204812 114204926 -38332333 + PB1D10 SINE Alu 3 115 -5 4 1456 337 233 248 8 chr5 114209512 114209629 -38327630 + RSINE1 SINE B4 2 146 -19 4 1456 312 27 0 0 chr5 114209634 114209671 -38327588 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1456 801 132 74 62 chr5 114209716 114209878 -38327381 + B2_Mm2 SINE B2 2 165 -30 4 1456 189 0 0 0 chr5 114209903 114209924 -38327335 + (CAGG)n Simple_repeat Simple_repeat 2 22 0 4 1456 1083 64 43 0 chr5 114210361 114210502 -38326757 + B1_Mm SINE Alu 1 147 0 4 1456 228 100 0 0 chr5 114210502 114210542 -38326717 + (A)n Simple_repeat Simple_repeat 1 40 0 4 1456 305 109 0 18 chr5 114210847 114210903 -38326356 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1456 180 0 0 0 chr5 114210903 114210922 -38326337 + (GA)n Simple_repeat Simple_repeat 2 21 0 4 1456 251 175 53 0 chr5 114211937 114211994 -38325265 + PB1D7 SINE Alu 5 64 -56 4 1456 463 275 92 0 chr5 114212077 114212208 -38325051 - ID_B1 SINE B4 -1 223 81 4 1456 329 100 264 28 chr5 114212288 114212360 -38324899 - B1F1 SINE Alu 0 149 61 4 1456 883 202 54 25 chr5 114213275 114213478 -38323781 + B3 SINE B2 3 211 -5 4 1456 1226 114 0 66 chr5 114213500 114213674 -38323585 + B2_Mm2 SINE B2 2 169 -26 4 1456 1126 76 0 7 chr5 114213674 114213820 -38323439 - B1_Mus2 SINE Alu 0 147 3 4 1456 1226 114 0 66 chr5 114213820 114213842 -38323417 + B2_Mm2 SINE B2 170 185 -10 4 1456 1286 40 0 0 chr5 114215046 114215194 -38322065 + B1_Mus1 SINE Alu 1 148 0 4 1456 227 220 50 17 chr5 114215626 114215686 -38321573 + PB1D9 SINE Alu 11 72 -48 4 1456 374 267 19 9 chr5 114216696 114216802 -38320457 + PB1D9 SINE Alu 9 115 -5 4 1456 24 0 0 0 chr5 114217412 114217436 -38319823 + AT_rich Low_complexity Low_complexity 1 24 0 4 1456 349 247 53 11 chr5 114217443 114217584 -38319675 + B3 SINE B2 51 196 -2 4 1456 1751 164 107 28 chr5 114217555 114217996 -38319263 + RMER4B LTR ERVK 30 464 -2 4 1456 738 231 131 111 chr5 114218095 114218446 -38318813 + MTE2a LTR MaLR 20 377 -2 4 1456 227 301 143 27 chr5 114218565 114218712 -38318547 + RSINE1 SINE B4 1 164 -1 4 1456 262 339 51 0 chr5 114219111 114219229 -38318030 + B1F SINE Alu 7 130 -19 4 1456 293 318 90 8 chr5 114219233 114219366 -38317893 + RSINE1 SINE B4 2 145 -20 4 1456 589 246 135 39 chr5 114220193 114220371 -38316888 + B3 SINE B2 17 211 -5 4 1456 591 197 17 0 chr5 114220384 114220513 -38316746 + B1_Mur2 SINE Alu 2 140 -9 4 1456 291 130 0 0 chr5 114220530 114220584 -38316675 + (GA)n Simple_repeat Simple_repeat 2 55 0 4 1456 1110 36 66 0 chr5 114220753 114220890 -38316369 + B1_Mus2 SINE Alu 2 147 0 4 1456 291 185 191 21 chr5 114220907 114221001 -38316258 + RSINE1 SINE B4 1 110 -55 4 1456 198 0 0 0 chr5 114222414 114222436 -38314823 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1456 291 157 0 0 chr5 114222503 114222554 -38314705 + GA-rich Low_complexity Low_complexity 2 52 0 4 1456 318 50 0 0 chr5 114223133 114223173 -38314086 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1456 252 178 98 10 chr5 114224801 114224903 -38312356 - RLTR1B-int LTR ERV1 -2049 1250 1140 4 1456 363 183 10 61 chr5 114225367 114225466 -38311793 + PB1D9 SINE Alu 24 117 -3 4 1456 333 68 0 0 chr5 114225594 114225638 -38311621 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1456 431 250 86 117 chr5 114225997 114226160 -38311099 + ID_B1 SINE B4 73 230 -62 4 1456 223 297 158 7 chr5 114227360 114227422 -38309837 + RSINE1 SINE B4 4 85 -80 4 1456 1602 36 0 20 chr5 114227422 114227618 -38309641 + B2_Mm1a SINE B2 1 192 -1 4 1456 223 297 158 7 chr5 114227618 114227694 -38309565 + RSINE1 SINE B4 86 163 -2 4 1456 22 0 0 0 chr5 114228249 114228271 -38308988 + AT_rich Low_complexity Low_complexity 1 22 0 4 1456 403 304 48 0 chr5 114230055 114230223 -38307036 + (CACTG)n Simple_repeat Simple_repeat 2 177 0 4 1456 348 307 22 33 chr5 114230259 114230493 -38306766 + (CAGTA)n Simple_repeat Simple_repeat 1 231 0 4 1456 210 299 0 0 chr5 114230521 114230678 -38306581 + (CACAG)n Simple_repeat Simple_repeat 2 158 0 4 1456 302 282 30 15 chr5 114230733 114230866 -38306393 + (CAGTA)n Simple_repeat Simple_repeat 2 136 0 4 1456 308 274 94 46 chr5 114231479 114231777 -38305482 + MLT1A LTR MaLR 42 363 -11 4 1456 1792 135 104 108 chr5 114231813 114232124 -38305135 - MTC LTR MaLR -8 413 97 4 1456 770 189 13 47 chr5 114232124 114232274 -38304985 - B1_Mur2 SINE Alu 0 149 5 4 1456 1792 135 104 108 chr5 114232274 114232377 -38304882 - MTC LTR MaLR -325 96 1 4 1456 342 231 0 0 chr5 114232378 114232495 -38304764 + (CACCAT)n Simple_repeat Simple_repeat 6 122 0 4 1456 282 360 34 22 chr5 114232511 114232690 -38304569 - LTR16A LTR ERVL -14 437 257 4 1456 186 320 48 58 chr5 114233492 114233595 -38303664 + MIR3 SINE MIR 107 208 0 4 1456 2121 132 47 84 chr5 114234137 114234566 -38302693 + MTC LTR MaLR 1 413 -8 4 1456 644 109 10 0 chr5 114235474 114235575 -38301684 + B1_Mus2 SINE Alu 46 147 0 4 1456 1496 78 16 0 chr5 114235577 114235768 -38301491 + B2_Mm2 SINE B2 2 195 0 4 1456 671 277 41 5 chr5 114235911 114236107 -38301152 + ID_B1 SINE B4 2 204 -20 4 1456 301 294 36 22 chr5 114236797 114236936 -38300323 - MIRc SINE MIR -101 167 27 4 1456 202 262 0 0 chr5 114237360 114237402 -38299857 + (CCCA)n Simple_repeat Simple_repeat 3 44 0 4 1456 902 162 6 0 chr5 114237402 114237581 -38299678 + (TTCA)n Simple_repeat Simple_repeat 1 180 0 4 1456 771 196 0 0 chr5 114237609 114237777 -38299482 + (TTCA)n Simple_repeat Simple_repeat 1 168 0 4 1456 205 316 50 30 chr5 114237841 114237942 -38299317 + MIRb SINE MIR 17 119 -149 4 1456 395 158 96 12 chr5 114238023 114238106 -38299153 + PB1D10 SINE Alu 28 117 0 4 1456 343 303 44 22 chr5 114239119 114239254 -38298005 - MIR3 SINE MIR -30 178 41 4 1456 1048 207 5 0 chr5 114239863 114240071 -38297188 + B3 SINE B2 2 210 -6 5 1456 1082 62 0 0 chr5 114240151 114240295 -38296964 - B1_Mus1 SINE Alu -2 146 3 5 1456 381 250 151 19 chr5 114240323 114240429 -38296830 + PB1D9 SINE Alu 1 120 0 5 1456 538 238 40 34 chr5 114240457 114240605 -38296654 - B3A SINE B2 0 198 50 5 1456 22 0 0 0 chr5 114240811 114240833 -38296426 + AT_rich Low_complexity Low_complexity 1 22 0 5 1456 202 158 26 0 chr5 114240927 114240965 -38296294 + MIR SINE MIR 81 119 -89 5 1456 690 89 0 0 chr5 114241174 114241286 -38295973 + (TC)n Simple_repeat Simple_repeat 2 113 0 5 1456 235 266 31 0 chr5 114241425 114241489 -38295770 - ID4 SINE ID -16 67 2 5 1456 234 243 247 0 chr5 114241503 114241598 -38295661 - MIR SINE MIR -124 152 39 5 1456 456 284 0 0 chr5 114241758 114242015 -38295244 + (CA)n Simple_repeat Simple_repeat 1 257 0 5 1456 183 184 0 0 chr5 114242334 114242372 -38294887 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 5 1456 209 355 0 84 chr5 114245964 114246047 -38291212 + L2c LINE L2 3296 3371 -16 5 1456 514 299 22 93 chr5 114246124 114246349 -38290910 - B4 SINE B4 0 292 84 5 1456 189 322 21 75 chr5 114246410 114246504 -38290755 - MIRb SINE MIR -92 176 88 5 1456 682 204 27 27 chr5 114247753 114247899 -38289360 + RSINE1 SINE B4 3 148 -17 5 1456 21 0 0 0 chr5 114247923 114247944 -38289315 + AT_rich Low_complexity Low_complexity 1 21 0 5 1456 200 309 0 0 chr5 114248152 114248207 -38289052 - MIRb SINE MIR -157 111 57 5 1456 240 269 164 18 chr5 114248243 114248353 -38288906 - B4 SINE B4 0 292 167 5 1456 228 307 40 13 chr5 114248550 114248626 -38288633 + PB1D10 SINE Alu 32 109 -8 5 1456 243 184 89 14 chr5 114249529 114249599 -38287660 + MIRc SINE MIR 91 161 -101 5 1456 324 0 0 0 chr5 114249991 114250027 -38287232 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1456 999 156 0 0 chr5 114251082 114251261 -38285998 + (TTCA)n Simple_repeat Simple_repeat 1 179 0 5 1456 1002 162 0 0 chr5 114251282 114251461 -38285798 + (CTCA)n Simple_repeat Simple_repeat 1 179 0 5 1456 987 156 0 0 chr5 114251482 114251661 -38285598 + (CTCA)n Simple_repeat Simple_repeat 1 179 0 5 1456 207 100 0 0 chr5 114251663 114251693 -38285566 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 5 1456 186 118 0 73 chr5 114252378 114252416 -38284843 + CT-rich Low_complexity Low_complexity 17 52 0 5 1456 1521 78 5 0 chr5 114252416 114252609 -38284650 - B2_Mm2 SINE B2 -1 194 1 5 1456 186 118 0 73 chr5 114252609 114252625 -38284634 + polypyrimidine Low_complexity Low_complexity 2 16 0 5 1456 437 267 8 32 chr5 114252625 114252749 -38284510 - ID_B1 SINE B4 0 224 104 5 1456 458 33 17 0 chr5 114253266 114253326 -38283933 + (CA)n Simple_repeat Simple_repeat 1 61 0 5 1456 202 341 39 31 chr5 114253732 114253862 -38283397 - L2b LINE L2 -227 3148 3018 5 1456 1202 139 118 10 chr5 114253984 114254188 -38283071 - URR1A DNA MER1_type 0 226 1 5 1456 376 279 122 16 chr5 114255086 114255275 -38281984 + L1M5 LINE L1 5536 5744 -420 5 1456 341 319 115 37 chr5 114255311 114255555 -38281704 - ORR1E LTR MaLR 0 359 97 5 1456 413 285 136 19 chr5 114255743 114255897 -38281362 - MTD LTR MaLR -138 281 110 5 1456 802 239 65 0 chr5 114255949 114256150 -38281109 + ID_B1 SINE B4 11 224 0 5 1456 940 132 11 6 chr5 114256869 114257044 -38280215 + (TTCCC)n Simple_repeat Simple_repeat 3 178 0 5 1456 426 231 0 0 chr5 114257053 114257170 -38280089 + CT-rich Low_complexity Low_complexity 1 117 0 5 1456 248 322 82 27 chr5 114257283 114257566 -38279693 - L2a LINE L2 -262 3164 2869 5 1456 189 171 0 0 chr5 114258800 114258835 -38278424 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 5 1456 309 137 0 56 chr5 114258851 114258890 -38278369 + HAL1-3A_ME LINE L1 1975 2011 -847 5 1456 288 0 0 0 chr5 114258890 114258922 -38278337 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1456 309 137 0 56 chr5 114258922 114258936 -38278323 + HAL1-3A_ME LINE L1 2012 2025 -833 5 1456 315 354 49 56 chr5 114259010 114259174 -38278085 - L2a LINE L2 -265 3161 3000 5 1456 551 191 9 37 chr5 114259288 114259397 -38277862 + Lx5 LINE L1 6726 6831 -219 5 1456 319 242 0 66 chr5 114259392 114259498 -38277761 + Lx4B LINE L1 6959 7057 -1 5 1456 1190 55 0 7 chr5 114259512 114259658 -38277601 + B1_Mus2 SINE Alu 3 147 0 5 1456 571 112 10 10 chr5 114259658 114259757 -38277502 + (GAGAA)n Simple_repeat Simple_repeat 3 101 0 5 1456 352 275 40 40 chr5 114259941 114260089 -38277170 + RLTR9B LTR ERVK 290 437 0 5 1456 1842 184 100 50 chr5 114260192 114260691 -38276568 - RMER17B LTR ERVK -434 524 1 5 1456 214 214 59 119 chr5 114260700 114260801 -38276458 - RSINE1 SINE B4 -69 96 2 5 1456 229 131 33 0 chr5 114260823 114260884 -38276375 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 5 1456 1015 57 7 0 chr5 114260891 114261031 -38276228 - B1_Mus2 SINE Alu 0 147 7 5 1456 675 264 0 0 chr5 114261042 114261182 -38276077 - B1F SINE Alu -2 147 8 5 1456 480 313 0 45 chr5 114261182 114261199 -38276060 - ID_B1 SINE B4 -2 222 73 5 1456 1625 32 16 0 chr5 114261260 114261449 -38275810 + B2_Mm1a SINE B2 2 193 0 5 1456 317 62 21 0 chr5 114261551 114261599 -38275660 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 5 1456 1086 71 50 0 chr5 114261730 114261870 -38275389 + B1_Mus1 SINE Alu 2 148 0 5 1456 25 0 0 0 chr5 114261957 114261982 -38275277 + AT_rich Low_complexity Low_complexity 1 25 0 5 1456 309 181 30 162 chr5 114261989 114262088 -38275171 - B1_Mur4 SINE Alu 0 150 65 5 1456 2923 124 63 65 chr5 114262089 114262674 -38274585 - RLTR6_Mm LTR ERV1 -70 584 1 5 1456 300 326 189 46 chr5 114262818 114263063 -38274196 + MTEb LTR MaLR 46 288 -91 5 1456 229 227 78 26 chr5 114263624 114263701 -38273558 - B4 SINE B4 -210 82 2 5 1456 654 287 17 17 chr5 114263746 114263927 -38273332 - B3A SINE B2 -16 182 2 5 1456 924 229 39 10 chr5 114263950 114264157 -38273102 - B3 SINE B2 -3 213 1 5 1456 370 340 101 52 chr5 114264248 114264614 -38272645 - L1M5 LINE L1 -389 5775 5392 5 1456 244 259 90 49 chr5 114265542 114265664 -38271595 + MIRc SINE MIR 25 151 -117 5 1456 243 0 0 0 chr5 114266773 114266800 -38270459 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1456 377 263 112 50 chr5 114266810 114266970 -38270289 - B4 SINE B4 -20 272 103 5 1456 1195 62 7 0 chr5 114266976 114267122 -38270137 + B1_Mus2 SINE Alu 1 147 0 5 1456 949 144 7 33 chr5 114267621 114267772 -38269487 + B1_Mur3 SINE Alu 1 147 -2 5 1456 1194 109 69 0 chr5 114267908 114268083 -38269176 + B2_Mm2 SINE B2 4 190 -5 5 1456 521 303 45 0 chr5 114268156 114268311 -38268948 - RSINE1 SINE B4 -2 163 2 5 1456 330 119 179 0 chr5 114268319 114268386 -38268873 - ID_B1 SINE B4 -4 220 142 5 1456 227 313 79 20 chr5 114268386 114268415 -38268844 - PB1D10 SINE Alu 0 112 11 5 1456 32 29 0 42 chr5 114270489 114270514 -38266745 + AT_rich Low_complexity Low_complexity 1 25 0 5 1456 446 234 93 9 chr5 114270514 114270622 -38266637 - PB1D7 SINE Alu -2 118 2 5 1456 32 29 0 42 chr5 114270622 114270652 -38266607 + AT_rich Low_complexity Low_complexity 1 29 0 5 1456 507 173 247 134 chr5 114270652 114270805 -38266454 - B3 SINE B2 0 216 42 5 1456 464 174 224 0 chr5 114270805 114270903 -38266356 - PB1D9 SINE Alu 0 120 1 5 1456 507 173 247 134 chr5 114270903 114270943 -38266316 - B3 SINE B2 -175 41 1 5 1456 32 29 0 42 chr5 114270943 114270958 -38266301 + AT_rich Low_complexity Low_complexity 1 15 0 5 1456 272 284 45 11 chr5 114270962 114271051 -38266208 + PB1D10 SINE Alu 26 117 0 5 1456 1066 118 0 17 chr5 114271110 114271291 -38265968 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 5 1456 662 221 39 0 chr5 114271353 114271480 -38265779 + ID_B1 SINE B4 84 215 -9 5 1456 282 153 250 0 chr5 114271664 114271736 -38265523 + PB1D9 SINE Alu 31 120 0 5 1456 200 59 29 0 chr5 114271791 114271825 -38265434 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1456 1202 62 0 0 chr5 114271871 114272017 -38265242 - B1_Mus1 SINE Alu 0 148 3 5 1456 1544 58 21 0 chr5 114272072 114272262 -38264997 - B2_Mm2 SINE B2 0 195 2 5 1456 1123 88 0 0 chr5 114272318 114272465 -38264794 + B1_Mus1 SINE Alu 2 148 0 5 1456 507 33 0 0 chr5 114272467 114272528 -38264731 + (GGA)n Simple_repeat Simple_repeat 3 63 0 5 1456 1054 200 53 10 chr5 114272532 114272739 -38264520 - B3 SINE B2 0 216 1 5 1456 689 226 48 72 chr5 114272806 114272973 -38264286 - RSINE1 SINE B4 0 165 3 5 1456 180 0 0 0 chr5 114273085 114273105 -38264154 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1456 373 162 125 0 chr5 114273113 114273193 -38264066 + Lx9 LINE L1 7240 7329 -315 5 1456 964 100 0 0 chr5 114273195 114273335 -38263924 + B2_Mm2 SINE B2 3 142 -53 5 1456 618 207 79 0 chr5 114273355 114273495 -38263764 + Lx9 LINE L1 7358 7508 -136 5 1456 1251 104 38 5 chr5 114273755 114273939 -38263320 - B2_Mm2 SINE B2 -4 191 2 5 1456 206 57 0 54 chr5 114274029 114274066 -38263193 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1456 960 157 7 0 chr5 114274066 114274204 -38263055 - B1_Mur3 SINE Alu -9 140 2 5 1456 230 236 259 18 chr5 114274668 114274780 -38262479 + MIRc SINE MIR 13 151 -125 5 1456 367 169 0 40 chr5 114274975 114275049 -38262210 + PB1 SINE Alu 53 123 -4 5 1456 277 224 0 0 chr5 114275090 114275148 -38262111 + B1F2 SINE Alu 2 59 -90 5 1456 185 296 99 0 chr5 114275649 114275720 -38261539 - MIRb SINE MIR -94 174 97 5 1456 205 146 0 24 chr5 114276067 114276109 -38261150 + MIRc SINE MIR 83 123 -145 5 1456 480 307 78 1 chr5 114276129 114276328 -38260931 - Tigger5 DNA MER2_type -1 2405 2217 6 1456 271 315 33 0 chr5 114276316 114276408 -38260851 - MER47B DNA MER2_type -290 128 34 6 1456 330 225 0 0 chr5 114276505 114276576 -38260683 + HAL1-2a_MD LINE L1 2338 2408 -616 6 1456 692 162 0 35 chr5 114276576 114276702 -38260557 - B1_Mur4 SINE Alu -11 139 18 6 1456 228 111 0 0 chr5 114277054 114277090 -38260169 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1456 518 281 30 0 chr5 114277356 114277491 -38259768 - ID_B1 SINE B4 -5 219 81 6 1456 609 110 0 0 chr5 114277493 114277584 -38259675 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 6 1456 703 211 7 15 chr5 114277584 114277719 -38259540 - B1_Mur1 SINE Alu -13 136 3 6 1456 180 0 0 0 chr5 114278147 114278167 -38259092 + (T)n Simple_repeat Simple_repeat 1 20 0 6 1456 525 261 171 16 chr5 114278707 114278894 -38258365 + ID_B1 SINE B4 2 217 -7 6 1456 356 136 222 0 chr5 114278905 114278986 -38258273 + B3 SINE B2 7 105 -111 6 1456 195 184 0 0 chr5 114279024 114279062 -38258197 + CT-rich Low_complexity Low_complexity 2 39 0 6 1456 1113 78 14 0 chr5 114279115 114279256 -38258003 + B1_Mus1 SINE Alu 1 143 -5 6 1456 236 100 25 0 chr5 114279258 114279298 -38257961 + (TAA)n Simple_repeat Simple_repeat 1 41 0 6 1456 1100 137 0 0 chr5 114279374 114279532 -38257727 + B2_Mm2 SINE B2 2 159 -36 6 1456 333 0 0 0 chr5 114279532 114279569 -38257690 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 6 1456 1100 137 0 0 chr5 114279569 114279585 -38257674 + B2_Mm2 SINE B2 160 175 -20 6 1456 601 248 32 19 chr5 114279590 114279746 -38257513 + RSINE1 SINE B4 8 165 0 6 1456 29 47 0 0 chr5 114279772 114279815 -38257444 + AT_rich Low_complexity Low_complexity 1 43 0 6 1456 288 164 49 0 chr5 114279889 114279950 -38257309 + B1F SINE Alu 73 136 -13 6 1456 263 140 20 0 chr5 114279957 114280007 -38257252 + GA-rich Low_complexity Low_complexity 3 53 0 6 1456 280 262 16 16 chr5 114280923 114281047 -38256212 + (TATATG)n Simple_repeat Simple_repeat 2 125 0 6 1456 228 298 0 0 chr5 114281048 114281105 -38256154 + (TG)n Simple_repeat Simple_repeat 2 58 0 6 1456 441 282 0 68 chr5 114281220 114281318 -38255941 + PB1D7 SINE Alu 1 92 -28 6 1456 1077 78 7 14 chr5 114281318 114281455 -38255804 + B1_Mus1 SINE Alu 2 139 -9 6 1456 215 0 67 0 chr5 114281455 114281485 -38255774 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 6 1456 441 282 0 68 chr5 114281490 114281509 -38255750 + PB1D7 SINE Alu 93 110 -10 6 1456 345 215 346 0 chr5 114281948 114282055 -38255204 + B1F1 SINE Alu 5 148 -1 6 1456 348 263 0 13 chr5 114282056 114282133 -38255126 + RSINE1 SINE B4 1 76 -89 6 1456 324 111 0 0 chr5 114282171 114282225 -38255034 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1456 228 67 0 0 chr5 114282331 114282361 -38254898 + (CAGA)n Simple_repeat Simple_repeat 1 30 0 6 1456 554 274 91 24 chr5 114282880 114283089 -38254170 + MER57F LTR ERV1 1 223 -213 6 1456 477 0 0 0 chr5 114283191 114283244 -38254015 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1456 180 0 0 0 chr5 114283244 114283264 -38253995 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1456 565 191 125 37 chr5 114283279 114283415 -38253844 + B1_Mur2 SINE Alu 2 149 0 6 1456 410 0 20 0 chr5 114284009 114284059 -38253200 + (TCC)n Simple_repeat Simple_repeat 3 53 0 6 1456 1411 42 65 0 chr5 114284061 114284229 -38253030 - B2_Mm2 SINE B2 -16 179 1 6 1456 419 264 29 65 chr5 114284647 114284785 -38252474 - MIR SINE MIR -69 193 61 6 1456 207 0 0 0 chr5 114285393 114285416 -38251843 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1456 1073 43 0 103 chr5 114285416 114285500 -38251759 - B1_Mus1 SINE Alu -8 140 66 6 1456 1739 21 0 0 chr5 114285500 114285692 -38251567 + B2_Mm1a SINE B2 2 193 0 6 1456 1073 43 0 103 chr5 114285692 114285763 -38251496 - B1_Mus1 SINE Alu -83 65 1 6 1456 1379 28 0 0 chr5 114285770 114285946 -38251313 - B2_Mm1a SINE B2 0 193 18 6 1456 245 206 56 42 chr5 114285959 114286030 -38251229 - B3 SINE B2 0 216 145 6 1456 738 254 95 13 chr5 114286024 114286255 -38251004 - B4A SINE B4 -42 250 1 6 1456 740 246 56 56 chr5 114286612 114286827 -38250432 + B3 SINE B2 2 216 0 6 1456 263 310 32 57 chr5 114287300 114287423 -38249836 + PB1D7 SINE Alu 1 120 0 6 1456 279 177 0 151 chr5 114287634 114287727 -38249532 + MTD-int LTR MaLR 180 258 -1000 6 1456 1256 41 0 0 chr5 114287727 114287874 -38249385 + B1_Mm SINE Alu 1 147 0 6 1456 1338 96 21 11 chr5 114287899 114288089 -38249170 + B2_Mm2 SINE B2 1 192 -3 6 1456 1161 64 0 0 chr5 114288095 114288235 -38249024 + B1_Mus2 SINE Alu 1 140 -7 6 1456 1931 198 216 40 chr5 114288262 114288856 -38248403 + MTD-int LTR MaLR 406 1103 -155 6 1456 198 0 0 0 chr5 114288867 114288889 -38248370 + (TC)n Simple_repeat Simple_repeat 1 22 0 6 1456 1145 79 0 24 chr5 114288910 114289078 -38248181 - B2_Mm2 SINE B2 -31 164 1 6 1456 354 264 123 14 chr5 114289110 114289256 -38248003 - B3 SINE B2 -2 214 53 6 1456 1215 54 0 7 chr5 114289334 114289483 -38247776 - B1_Mus1 SINE Alu 0 148 1 6 1456 269 315 48 14 chr5 114289483 114289623 -38247636 + MTD-int LTR MaLR 1096 1240 -18 6 1456 589 249 80 17 chr5 114289623 114289858 -38247401 + MTD LTR MaLR 2 263 -133 6 1456 1321 205 65 46 chr5 114289858 114290264 -38246995 + MT2A LTR ERVL 1 544 -57 6 1456 399 242 80 72 chr5 114290225 114290363 -38246896 + MTD LTR MaLR 252 390 -29 6 1456 558 291 144 6 chr5 114290488 114290661 -38246598 - B3A SINE B2 -1 197 1 6 1456 654 218 0 0 chr5 114290777 114290901 -38246358 + B1_Mur1 SINE Alu 18 141 -8 6 1456 27 0 0 0 chr5 114290912 114290939 -38246320 + AT_rich Low_complexity Low_complexity 1 27 0 6 1456 1057 100 50 6 chr5 114290947 114291108 -38246151 + B2_Mm2 SINE B2 2 169 -26 6 1456 223 65 0 0 chr5 114291129 114291160 -38246099 - B3 SINE B2 -184 32 2 6 1456 247 222 79 109 chr5 114292197 114292298 -38244961 - B4 SINE B4 -30 262 165 6 1456 449 144 45 12 chr5 114292228 114292323 -38244936 - B1_Mur2 SINE Alu 0 149 30 6 1456 531 0 0 0 chr5 114293882 114293941 -38243318 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 6 1457 848 235 126 18 chr5 114295629 114295907 -38241352 + MTD LTR MaLR 3 273 -146 6 1457 491 264 126 27 chr5 114295950 114296133 -38241126 + B3 SINE B2 11 211 -5 6 1457 357 333 49 21 chr5 114296637 114296781 -38240478 - RSINE1 SINE B4 -17 148 1 6 1457 454 278 84 66 chr5 114296781 114297007 -38240252 - B4 SINE B4 -60 232 3 6 1457 301 290 89 26 chr5 114297018 114297209 -38240050 + RMER17C LTR ERVK 144 346 -64 6 1457 751 110 10 0 chr5 114298074 114298206 -38239053 + B2_Mm2 SINE B2 3 141 -52 6 1457 603 0 0 0 chr5 114298217 114298284 -38238975 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 6 1457 189 94 0 0 chr5 114298407 114298439 -38238820 + (CTCA)n Simple_repeat Simple_repeat 3 34 0 6 1457 423 0 0 0 chr5 114298915 114298962 -38238297 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1457 273 217 17 0 chr5 114298969 114299029 -38238230 - B3A SINE B2 -35 163 103 6 1457 1228 35 7 0 chr5 114299107 114299252 -38238007 + B1_Mus2 SINE Alu 2 147 0 6 1457 270 81 0 0 chr5 114299252 114299289 -38237970 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1457 244 277 42 21 chr5 114300366 114300384 -38236875 + ID_B1 SINE B4 70 167 -57 6 1457 403 179 13 0 chr5 114300384 114300462 -38236797 + B1_Mus1 SINE Alu 10 88 -60 6 1457 355 280 10 107 chr5 114301567 114301763 -38235496 - B4 SINE B4 -111 181 5 6 1457 357 279 54 0 chr5 114302758 114302887 -38234372 + L1MB8 LINE L1 6031 6166 -12 6 1457 1196 62 0 0 chr5 114302937 114303082 -38234177 - B1_Mm SINE Alu -1 146 2 6 1457 389 220 0 26 chr5 114303089 114303243 -38234016 + (TG)n Simple_repeat Simple_repeat 1 150 0 6 1457 595 250 39 33 chr5 114303254 114303407 -38233852 - RSINE1 SINE B4 -10 155 2 6 1457 400 346 81 60 chr5 114303463 114303746 -38233513 + B4A SINE B4 1 289 -3 6 1457 246 294 60 60 chr5 114303888 114304004 -38233255 - PB1D10 SINE Alu 0 117 2 6 1457 254 224 17 0 chr5 114304149 114304207 -38233052 - B3A SINE B2 -137 61 3 6 1457 646 121 134 14 chr5 114304899 114305041 -38232218 - B2_Mm2 SINE B2 -1 194 36 6 1457 235 353 0 12 chr5 114306477 114306563 -38230696 + MamSINE1 SINE tRNA 69 153 -137 6 1457 323 279 112 51 chr5 114307904 114308119 -38229140 + B4 SINE B4 2 229 -63 6 1457 414 0 0 0 chr5 114308165 114308211 -38229048 + (TAAAA)n Simple_repeat Simple_repeat 2 47 0 6 1457 778 151 77 28 chr5 114308220 114308363 -38228896 + B1_Mur4 SINE Alu 1 150 0 6 1457 244 83 20 20 chr5 114308949 114308998 -38228261 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1457 744 241 80 10 chr5 114309946 114310147 -38227112 + B3 SINE B2 2 216 0 6 1457 847 66 8 0 chr5 114310137 114310258 -38227001 + B1_Mm SINE Alu 26 147 0 6 1457 438 142 139 19 chr5 114311021 114311129 -38226130 + B1F2 SINE Alu 27 147 -2 6 1457 361 321 27 0 chr5 114311187 114311299 -38225960 + PB1D10 SINE Alu 1 115 -2 6 1457 861 199 16 49 chr5 114311360 114311545 -38225714 + B3 SINE B2 1 179 -37 6 1457 1034 134 199 0 chr5 114311753 114311939 -38225320 + URR1A DNA MER1_type 1 223 -3 6 1457 936 259 30 54 chr5 114312054 114312388 -38224871 + RLTR15 LTR ERVK 1 326 -33 6 1457 233 159 43 14 chr5 114313240 114313310 -38223949 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1457 1290 177 227 0 chr5 114313648 114313970 -38223289 - MTD LTR MaLR -8 411 17 6 1457 2169 89 9 22 chr5 114313971 114314129 -38223130 + ORR1A2 LTR MaLR 1 161 -166 6 1457 2453 104 174 3 chr5 114314129 114314515 -38222744 + RLTR44E LTR ERVK 1 452 0 6 1457 2169 89 9 22 chr5 114314515 114314679 -38222580 + ORR1A2 LTR MaLR 162 319 -8 6 1457 221 219 107 27 chr5 114314793 114314868 -38222391 + PB1 SINE Alu 42 122 -5 6 1457 856 249 23 47 chr5 114314876 114315091 -38222168 + B3 SINE B2 1 210 -6 7 1457 276 149 0 0 chr5 114315534 114315581 -38221678 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1457 425 271 153 24 chr5 114316098 114316268 -38220991 - B3A SINE B2 -6 192 1 7 1457 200 324 105 7 chr5 114316814 114316957 -38220302 + MIRb SINE MIR 51 207 -61 7 1457 1136 96 18 0 chr5 114316984 114317151 -38220108 + B2_Mm2 SINE B2 2 171 -24 7 1457 23 0 0 0 chr5 114317153 114317176 -38220083 + AT_rich Low_complexity Low_complexity 1 23 0 7 1457 430 224 0 0 chr5 114317554 114317630 -38219629 + ID4_ SINE ID 2 77 -6 7 1457 245 29 29 0 chr5 114317630 114317664 -38219595 + (CGAA)n Simple_repeat Simple_repeat 3 37 0 7 1457 876 108 0 0 chr5 114317664 114317794 -38219465 + (GAAA)n Simple_repeat Simple_repeat 3 132 0 7 1457 1207 261 102 41 chr5 114318014 114318425 -38218834 + RLTR18B LTR ERVK 50 485 -27 7 1457 241 350 88 27 chr5 114318923 114319070 -38218189 + B4 SINE B4 44 199 -93 7 1457 504 230 1 6 chr5 114318970 114319090 -38218169 + B1_Mur1 SINE Alu 14 130 -19 7 1457 257 292 0 0 chr5 114319625 114319697 -38217562 + RSINE1 SINE B4 6 77 -88 7 1457 252 0 0 0 chr5 114323331 114323359 -38213900 + (G)n Simple_repeat Simple_repeat 1 28 0 7 1457 318 50 0 0 chr5 114324431 114324471 -38212788 + (GGA)n Simple_repeat Simple_repeat 1 40 0 7 1457 798 199 0 37 chr5 114325273 114325461 -38211798 + RMER19C LTR ERVK 1 181 -556 7 1457 921 215 50 77 chr5 114325443 114325740 -38211519 + RMER19C LTR ERVK 47 335 -276 7 1457 380 228 43 0 chr5 114326517 114326609 -38210650 - PB1D10 SINE Alu 0 117 22 7 1457 727 166 71 7 chr5 114327058 114327198 -38210061 - B1_Mur3 SINE Alu 0 149 1 7 1457 274 261 92 0 chr5 114327491 114327556 -38209703 + B3 SINE B2 1 71 -145 7 1457 704 245 130 0 chr5 114327556 114327756 -38209503 - ORR1D1 LTR MaLR -147 227 2 7 1457 452 342 53 0 chr5 114327756 114327906 -38209353 - ID_B1 SINE B4 -61 163 6 7 1457 207 0 0 0 chr5 114328000 114328023 -38209236 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1457 2036 148 146 11 chr5 114328229 114328599 -38208660 - MTC LTR MaLR 0 421 2 7 1457 242 315 0 0 chr5 114329523 114329596 -38207663 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 1457 400 216 93 0 chr5 114329759 114329856 -38207403 - PB1D7 SINE Alu -8 112 7 7 1457 241 288 0 64 chr5 114329933 114330011 -38207248 + ID4_ SINE ID 9 81 -2 7 1457 792 249 147 8 chr5 114330441 114330692 -38206567 - B4A SINE B4 -4 288 3 7 1457 361 231 161 51 chr5 114331140 114331277 -38205982 + B3A SINE B2 4 155 -40 7 1457 229 175 149 60 chr5 114331872 114331939 -38205320 + B3 SINE B2 3 75 -141 7 1457 333 0 0 0 chr5 114333873 114333910 -38203349 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1457 830 130 79 7 chr5 114333930 114334069 -38203190 + B1_Mur3 SINE Alu 1 149 0 7 1457 236 159 47 16 chr5 114334070 114334134 -38203125 + A-rich Low_complexity Low_complexity 2 67 0 7 1457 306 0 0 0 chr5 114334166 114334200 -38203059 + (TC)n Simple_repeat Simple_repeat 2 35 0 7 1457 412 318 44 29 chr5 114334564 114334700 -38202559 + RSINE1 SINE B4 27 164 -1 7 1457 270 235 0 29 chr5 114334707 114334777 -38202482 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1457 343 342 178 37 chr5 114334822 114335092 -38202167 + L1M4 LINE L1 4819 5126 -1020 7 1457 299 194 14 27 chr5 114335118 114335192 -38202067 + RSINE1 SINE B4 92 164 -1 7 1457 211 222 18 18 chr5 114335345 114335400 -38201859 + PB1D10 SINE Alu 40 94 -23 7 1457 283 288 25 0 chr5 114335352 114335432 -38201827 + ID_B1 SINE B4 127 208 -16 7 1457 203 147 0 0 chr5 114335723 114335757 -38201502 + (CCCCCA)n Simple_repeat Simple_repeat 6 39 0 7 1457 421 175 262 0 chr5 114336046 114336149 -38201110 + B1_Mur2 SINE Alu 13 142 -7 7 1457 943 189 48 11 chr5 114336164 114336351 -38200908 - B3 SINE B2 -15 201 8 7 1457 231 236 18 0 chr5 114336363 114336418 -38200841 + L1MB8 LINE L1 6029 6084 -94 7 1457 197 33 33 0 chr5 114336909 114336939 -38200320 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 7 1457 1400 66 33 0 chr5 114336947 114337128 -38200131 - B2_Mm1a SINE B2 -6 187 1 7 1457 221 244 0 0 chr5 114337642 114337687 -38199572 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1457 1460 70 37 0 chr5 114337786 114337973 -38199286 - B2_Mm2 SINE B2 0 195 2 7 1457 603 227 17 8 chr5 114338007 114338127 -38199132 + B1_Mur1 SINE Alu 13 133 -16 7 1457 411 302 111 8 chr5 114338178 114338289 -38198970 + ID_B1 SINE B4 80 202 -22 7 1457 2082 141 80 13 chr5 114338289 114338677 -38198582 + MTC LTR MaLR 3 416 -5 7 1457 406 264 27 9 chr5 114338848 114338959 -38198300 - PB1D10 SINE Alu 0 117 5 7 1457 180 0 0 0 chr5 114339531 114339551 -38197708 + (C)n Simple_repeat Simple_repeat 1 20 0 7 1457 876 219 125 0 chr5 114339678 114339870 -38197389 + B3 SINE B2 1 216 0 7 1457 235 127 0 31 chr5 114339875 114339940 -38197319 + A-rich Low_complexity Low_complexity 3 65 0 7 1457 683 224 7 26 chr5 114340254 114340405 -38196854 + B1_Mur1 SINE Alu 2 149 0 7 1457 1084 212 19 10 chr5 114340425 114340630 -38196629 - B3 SINE B2 0 216 10 7 1457 208 349 0 0 chr5 114341510 114341573 -38195686 + (CA)n Simple_repeat Simple_repeat 1 63 0 7 1457 1237 54 0 0 chr5 114342461 114342609 -38194650 + B1_Mus1 SINE Alu 1 148 0 7 1457 230 279 63 0 chr5 114342675 114342754 -38194505 + PB1D7 SINE Alu 36 119 -1 7 1457 213 108 0 0 chr5 114342806 114342843 -38194416 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1457 438 69 0 0 chr5 114344461 114344519 -38192740 + (TC)n Simple_repeat Simple_repeat 2 59 0 7 1457 252 0 0 0 chr5 114344519 114344547 -38192712 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1457 305 194 30 0 chr5 114344870 114344937 -38192322 - B4 SINE B4 -214 78 10 7 1457 230 298 0 0 chr5 114345098 114345155 -38192104 + tRNA-Ala-GCA tRNA tRNA 2 58 -17 7 1457 215 347 40 0 chr5 114345155 114345167 -38192092 + ID2 SINE ID 22 78 -5 7 1457 369 214 92 55 chr5 114345237 114345248 -38192011 + MT2B LTR ERVL 152 166 -435 7 1457 566 160 123 0 chr5 114345248 114345354 -38191905 + B1_Mus2 SINE Alu 2 120 -27 7 1457 636 81 0 0 chr5 114345354 114345441 -38191818 + (GGGA)n Simple_repeat Simple_repeat 3 89 0 7 1457 375 41 0 0 chr5 114345464 114345513 -38191746 + (CA)n Simple_repeat Simple_repeat 1 49 0 7 1457 441 259 140 45 chr5 114346248 114346470 -38190789 + B4A SINE B4 49 291 -1 7 1457 452 239 63 79 chr5 114346565 114346692 -38190567 + RSINE1 SINE B4 3 127 -38 7 1457 384 250 106 0 chr5 114347102 114347206 -38190053 - PB1D7 SINE Alu -5 115 1 7 1457 664 212 13 5 chr5 114347465 114347614 -38189645 + B1_Mur3 SINE Alu 2 146 -3 7 1457 594 142 213 16 chr5 114347614 114347736 -38189523 + B1_Mus1 SINE Alu 1 146 -2 7 1457 39 22 0 0 chr5 114347737 114347783 -38189476 + AT_rich Low_complexity Low_complexity 1 46 0 7 1457 654 274 59 5 chr5 114348317 114348504 -38188755 + B3A SINE B2 2 198 0 7 1457 961 153 0 13 chr5 114348507 114348659 -38188600 + B1_Mur4 SINE Alu 1 150 0 7 1457 453 315 138 0 chr5 114348695 114348825 -38188434 + ID_B1 SINE B4 15 162 -62 7 1457 1009 215 19 0 chr5 114350135 114350344 -38186915 - B3 SINE B2 -1 215 3 7 1457 21 57 0 0 chr5 114350353 114350388 -38186871 + AT_rich Low_complexity Low_complexity 1 35 0 7 1457 272 105 70 0 chr5 114350394 114350451 -38186808 - Lx2 LINE L1 0 6997 6937 7 1457 1140 82 13 0 chr5 114350451 114350609 -38186650 - B2_Mm2 SINE B2 -25 170 11 7 1457 270 0 0 0 chr5 114351702 114351732 -38185527 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 7 1457 382 248 88 29 chr5 114351739 114351876 -38185383 + B1F2 SINE Alu 1 145 -4 7 1457 995 151 7 0 chr5 114352509 114352655 -38184604 - B1_Mus1 SINE Alu -1 147 1 7 1457 201 39 0 0 chr5 114352933 114352959 -38184300 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1457 466 283 71 21 chr5 114352999 114353140 -38184119 + B3A SINE B2 1 148 -50 7 1457 805 150 8 8 chr5 114353329 114353457 -38183802 + B1_Mur2 SINE Alu 22 149 0 7 1457 216 0 0 0 chr5 114353495 114353519 -38183740 + (CAGG)n Simple_repeat Simple_repeat 1 24 0 7 1457 246 62 0 0 chr5 114353988 114354020 -38183239 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 7 1457 277 295 0 0 chr5 114354138 114354199 -38183060 + RSINE1 SINE B4 104 164 -1 7 1457 222 247 7 33 chr5 114354209 114354360 -38182899 + (CA)n Simple_repeat Simple_repeat 1 147 0 7 1457 22 0 0 0 chr5 114354385 114354407 -38182852 + AT_rich Low_complexity Low_complexity 1 22 0 7 1457 420 186 23 23 chr5 114354550 114354638 -38182621 + PB1D7 SINE Alu 33 120 0 7 1457 1235 297 91 43 chr5 114354819 114355680 -38181579 + L1MB8 LINE L1 5267 6168 -10 7 1457 203 0 0 36 chr5 114356016 114356044 -38181215 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 7 1457 449 223 82 82 chr5 114356422 114356602 -38180657 + B3A SINE B2 1 183 -15 7 1457 288 0 0 0 chr5 114356602 114356634 -38180625 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1457 449 223 82 82 chr5 114356634 114356648 -38180611 + B3A SINE B2 184 195 -3 7 1457 186 167 0 0 chr5 114356717 114356753 -38180506 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1457 2653 133 17 12 chr5 114356887 114357306 -38179953 - MTC LTR MaLR 0 421 1 7 1457 22 0 0 0 chr5 114358324 114358346 -38178913 + GC_rich Low_complexity Low_complexity 1 22 0 8 1457 22 0 0 0 chr5 114358557 114358579 -38178680 + GC_rich Low_complexity Low_complexity 1 22 0 8 1457 47 61 0 0 chr5 114358708 114358790 -38178469 + GC_rich Low_complexity Low_complexity 1 82 0 8 1457 261 318 11 22 chr5 114359418 114359508 -38177751 + MIRc SINE MIR 50 138 -130 8 1457 788 154 0 56 chr5 114359784 114359928 -38177331 + B1_Mur4 SINE Alu 15 150 0 8 1457 342 0 0 0 chr5 114359942 114359980 -38177279 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1457 443 264 111 21 chr5 114360077 114360267 -38176992 - B3 SINE B2 -6 210 4 8 1457 216 0 0 0 chr5 114360334 114360358 -38176901 + (TC)n Simple_repeat Simple_repeat 1 24 0 8 1457 423 0 0 0 chr5 114360358 114360404 -38176855 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1457 251 301 155 0 chr5 114360822 114360925 -38176334 - MIRb SINE MIR -124 144 26 8 1457 649 288 52 123 chr5 114361110 114361419 -38175840 - B4A SINE B4 0 292 6 8 1457 230 300 67 0 chr5 114361592 114361652 -38175607 - B4A SINE B4 -10 282 219 8 1457 234 0 0 0 chr5 114361653 114361679 -38175580 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1457 2285 110 98 3 chr5 114361699 114362054 -38175205 + RMER15 LTR ERVL 1 389 -186 8 1457 2833 54 53 5 chr5 114362054 114362428 -38174831 + MTB LTR MaLR 1 392 -8 8 1457 1190 98 43 5 chr5 114362432 114362616 -38174643 + RMER15 LTR ERVL 385 575 0 8 1457 511 331 53 24 chr5 114362616 114362784 -38174475 - B4A SINE B4 -117 175 3 8 1457 622 88 0 0 chr5 114362916 114362996 -38174263 + B1_Mus2 SINE Alu 56 135 -12 8 1457 180 0 0 0 chr5 114362997 114363017 -38174242 + (GA)n Simple_repeat Simple_repeat 2 21 0 8 1457 315 0 0 0 chr5 114363503 114363538 -38173721 + (TTG)n Simple_repeat Simple_repeat 2 36 0 8 1457 799 50 0 0 chr5 114363556 114363657 -38173602 - B1_Mus1 SINE Alu -20 128 28 8 1457 502 325 88 105 chr5 114363651 114363803 -38173456 - MLT2B1 LTR ERVL -75 445 274 8 1457 1418 84 5 0 chr5 114363803 114363994 -38173265 - B2_Mm1t SINE B2 0 193 2 8 1457 502 325 88 105 chr5 114363994 114364053 -38173206 - MLT2B1 LTR ERVL -247 273 227 8 1457 246 261 67 67 chr5 114364053 114364172 -38173087 + PB1D9 SINE Alu 1 119 -1 8 1457 502 325 88 105 chr5 114364172 114364310 -38172949 - MLT2B1 LTR ERVL -294 226 101 8 1457 586 93 196 36 chr5 114364333 114364445 -38172814 - B1_Mus2 SINE Alu -1 146 17 8 1457 304 171 26 79 chr5 114364462 114364538 -38172721 + B1_Mus1 SINE Alu 12 83 -65 8 1457 313 269 10 70 chr5 114364543 114364643 -38172616 - MLT2B1 LTR ERVL -409 106 13 8 1457 258 291 56 37 chr5 114365349 114365456 -38171803 + RSINE1 SINE B4 3 111 -54 8 1457 840 149 42 7 chr5 114365529 114365671 -38171588 + B1_Mur3 SINE Alu 2 148 -1 8 1457 235 219 78 45 chr5 114366147 114366287 -38170972 + MIRm SINE MIR 16 168 -108 8 1457 325 256 52 81 chr5 114366341 114366477 -38170782 + B3 SINE B2 85 216 0 8 1457 372 265 97 10 chr5 114366505 114366608 -38170651 + B3 SINE B2 3 114 -102 8 1457 519 196 9 61 chr5 114366596 114366710 -38170549 + B1_Mur1 SINE Alu 23 130 -19 8 1457 501 226 0 0 chr5 114366712 114366889 -38170370 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 8 1457 299 161 0 0 chr5 114366889 114366945 -38170314 + (CATA)n Simple_repeat Simple_repeat 1 56 0 8 1457 689 173 0 3 chr5 114366947 114367257 -38170002 + (TAGA)n Simple_repeat Simple_repeat 1 309 0 8 1457 238 345 32 40 chr5 114367674 114367798 -38169461 - MIRb SINE MIR -62 206 84 8 1457 302 240 213 8 chr5 114367936 114367957 -38169302 + MT2B LTR ERVL 132 177 -424 8 1457 602 143 59 16 chr5 114367957 114368084 -38169175 + B1F2 SINE Alu 1 149 0 8 1457 1203 48 0 14 chr5 114368122 114368270 -38168989 + B1_Mus2 SINE Alu 1 146 -1 8 1457 411 326 38 30 chr5 114368274 114368407 -38168852 - MIRb SINE MIR -127 141 8 8 1457 230 226 101 101 chr5 114369107 114369245 -38168014 - MLT1A LTR MaLR -119 450 313 8 1457 537 292 74 28 chr5 114369534 114369749 -38167510 - MLT1A LTR MaLR -130 244 20 8 1457 468 297 8 8 chr5 114369825 114369944 -38167315 + ID_B1 SINE B4 43 161 -63 8 1457 306 98 0 0 chr5 114369963 114370014 -38167245 + (CCCCCA)n Simple_repeat Simple_repeat 1 51 0 8 1457 414 192 39 0 chr5 114370053 114370131 -38167128 + ID_B1 SINE B4 143 223 -1 8 1457 206 237 0 48 chr5 114370132 114370194 -38167065 + A-rich Low_complexity Low_complexity 2 60 0 8 1457 399 242 0 104 chr5 114370274 114370306 -38166953 + MT2B LTR ERVL 138 155 -446 8 1457 935 66 0 0 chr5 114370306 114370427 -38166832 + B1_Mus2 SINE Alu 1 121 -26 8 1457 840 124 0 0 chr5 114370427 114370564 -38166695 + (GAAA)n Simple_repeat Simple_repeat 4 140 0 8 1457 1850 120 21 18 chr5 114370569 114370887 -38166372 - MTC LTR MaLR -43 378 3 8 1457 297 0 0 0 chr5 114370887 114370920 -38166339 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1457 1452 75 5 0 chr5 114370920 114371107 -38166152 + B2_Mm1a SINE B2 2 189 -4 8 1457 207 0 0 0 chr5 114371638 114371661 -38165598 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 8 1457 1885 134 16 82 chr5 114372142 114372581 -38164678 - RMER17C LTR ERVK 0 410 1 8 1457 1205 62 0 0 chr5 114372621 114372766 -38164493 - B1_Mm SINE Alu -1 146 2 8 1457 24 0 0 0 chr5 114372827 114372851 -38164408 + AT_rich Low_complexity Low_complexity 1 24 0 8 1457 186 133 0 0 chr5 114373097 114373127 -38164132 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1457 210 37 0 0 chr5 114373137 114373164 -38164095 + (CCCCAA)n Simple_repeat Simple_repeat 5 31 0 8 1457 347 301 14 42 chr5 114373656 114373798 -38163461 + C-rich Low_complexity Low_complexity 5 142 0 8 1457 1523 53 11 5 chr5 114373836 114374027 -38163232 + B2_Mm1t SINE B2 1 192 -1 8 1457 252 243 65 39 chr5 114374821 114374898 -38162361 + MLT1A1 LTR MaLR 314 392 -16 8 1457 313 216 131 20 chr5 114375235 114375334 -38161925 + MER3 DNA MER1_type 19 128 -81 8 1457 1174 61 7 20 chr5 114375382 114375532 -38161727 - B1_Mus1 SINE Alu 0 148 1 8 1457 655 211 85 104 chr5 114376109 114376368 -38160891 + RMER13B LTR ERVK 427 680 -228 8 1457 1207 68 0 0 chr5 114377032 114377179 -38160080 + B1_Mm SINE Alu 1 147 0 8 1457 1371 52 23 17 chr5 114377545 114377720 -38159539 - B2_Mm2 SINE B2 -18 177 2 8 1457 317 225 202 0 chr5 114377731 114377820 -38159439 - MIRb SINE MIR -121 147 41 8 1457 319 277 29 19 chr5 114377895 114377998 -38159261 - L2c LINE L2 0 3387 3284 8 1457 630 26 0 0 chr5 114378273 114378349 -38158910 + (GAAA)n Simple_repeat Simple_repeat 2 77 0 8 1457 1749 114 33 89 chr5 114378378 114378715 -38158544 - MTC LTR MaLR 0 421 104 8 1457 720 79 0 65 chr5 114378738 114378846 -38158413 - U6 snRNA snRNA -6 101 1 8 1457 459 215 11 11 chr5 114378848 114378942 -38158317 - MTC LTR MaLR -324 97 4 8 1457 229 94 0 0 chr5 114379277 114379309 -38157950 + ID4_ SINE ID 34 65 -18 8 1457 1264 35 0 0 chr5 114379345 114379488 -38157771 + B1_Mm SINE Alu 1 143 -4 8 1457 252 0 0 0 chr5 114379542 114379570 -38157689 + (CGGGG)n Simple_repeat Simple_repeat 1 28 0 8 1457 815 77 217 109 chr5 114379624 114379799 -38157460 + B2_Mm2 SINE B2 2 195 0 8 1457 429 277 34 43 chr5 114380244 114380361 -38156898 + PB1D7 SINE Alu 3 118 -2 8 1457 668 250 41 31 chr5 114380389 114380583 -38156676 + B3 SINE B2 8 203 -13 8 1457 659 208 9 0 chr5 114380585 114380714 -38156545 + ID_B1 SINE B4 97 223 -1 8 1457 282 143 0 0 chr5 114380729 114380778 -38156481 + (A)n Simple_repeat Simple_repeat 1 49 0 8 1457 378 0 0 0 chr5 114380863 114380905 -38156354 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1457 216 158 0 0 chr5 114381509 114381547 -38155712 + T-rich Low_complexity Low_complexity 1 38 0 8 1457 234 0 0 0 chr5 114381551 114381577 -38155682 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 8 1457 994 70 0 15 chr5 114381583 114381714 -38155545 - B2_Mm2 SINE B2 -65 130 2 8 1457 273 57 0 0 chr5 114381731 114381766 -38155493 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1457 387 168 9 225 chr5 114381778 114381817 -38155442 - B1_Mus1 SINE Alu -11 138 102 8 1457 252 0 0 0 chr5 114381817 114381845 -38155414 + (TA)n Simple_repeat Simple_repeat 2 29 0 8 1457 390 175 17 222 chr5 114381845 114381954 -38155305 - PB1D10 SINE Alu 0 117 14 8 1457 439 208 0 122 chr5 114382052 114382167 -38155092 - PB1D10 SINE Alu -3 114 14 8 1457 768 229 0 7 chr5 114382284 114382429 -38154830 - B1_Mur1 SINE Alu 0 149 6 8 1457 519 255 85 13 chr5 114382470 114382665 -38154594 - ID_B1 SINE B4 -7 217 6 8 1457 227 253 38 95 chr5 114382762 114382867 -38154392 - RLTR25B LTR ERVK -481 547 449 8 1457 682 254 0 0 chr5 114382774 114382904 -38154355 - ID_B1 SINE B4 -4 220 91 8 1457 1243 119 17 0 chr5 114383229 114383406 -38153853 + B2_Mm2 SINE B2 4 183 -12 8 1457 357 24 0 0 chr5 114383406 114383448 -38153811 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1457 754 225 47 57 chr5 114383554 114383766 -38153493 + B3 SINE B2 1 210 -6 8 1457 353 136 10 206 chr5 114384193 114384295 -38152964 - URR1B DNA MER1_type 0 225 144 8 1457 207 0 0 0 chr5 114384298 114384321 -38152938 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1457 925 50 50 0 chr5 114384321 114384440 -38152819 - B1_Mus1 SINE Alu -9 139 15 8 1457 860 205 51 0 chr5 114384443 114384599 -38152660 - URR1B DNA MER1_type -61 164 1 8 1457 338 252 47 75 chr5 114384702 114384809 -38152450 + B3 SINE B2 108 211 -5 8 1457 480 234 17 60 chr5 114384981 114385021 -38152238 - PB1D7 SINE Alu -26 123 87 8 1457 3223 60 10 15 chr5 114385021 114385430 -38151829 + MTB_Mm LTR MaLR 1 407 0 8 1457 480 222 0 57 chr5 114385430 114385516 -38151743 - PB1D7 SINE Alu -34 86 1 8 1457 432 169 35 46 chr5 114385531 114385618 -38151641 - ID_B1 SINE B4 -1 223 138 8 1457 276 336 25 33 chr5 114385618 114385651 -38151608 - PB1D9 SINE Alu -1 119 1 8 1457 225 0 0 0 chr5 114386364 114386389 -38150870 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1457 551 185 18 9 chr5 114386389 114386498 -38150761 - B1_Mur1 SINE Alu 0 149 40 9 1457 798 119 31 31 chr5 114386537 114386646 -38150613 + B2_Mm1a SINE B2 1 109 -84 9 1457 1431 85 5 0 chr5 114386646 114386834 -38150425 - B2_Mm1a SINE B2 -4 189 1 9 1457 798 119 31 31 chr5 114386834 114386854 -38150405 + B2_Mm1a SINE B2 110 130 -63 9 1457 307 173 0 0 chr5 114386854 114386886 -38150373 - B1_Mus2 SINE Alu -93 54 3 9 1457 32 0 0 0 chr5 114387241 114387273 -38149986 + AT_rich Low_complexity Low_complexity 1 32 0 9 1457 252 0 0 0 chr5 114389745 114389773 -38147486 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1457 433 242 21 0 chr5 114390454 114390549 -38146710 - PB1D10 SINE Alu -8 109 13 9 1457 278 276 169 66 chr5 114390562 114390582 -38146677 + B4A SINE B4 78 226 -65 9 1457 594 219 9 9 chr5 114390582 114390697 -38146562 + PB1D7 SINE Alu 6 120 0 9 1457 587 197 8 8 chr5 114390702 114390825 -38146434 + B1_Mur2 SINE Alu 27 149 0 9 1457 213 119 0 0 chr5 114391572 114391614 -38145645 + (A)n Simple_repeat Simple_repeat 1 42 0 9 1457 690 240 54 27 chr5 114391879 114392063 -38145196 - ID_B1 SINE B4 -32 192 4 9 1457 766 268 26 16 chr5 114393867 114394060 -38143199 + B3A SINE B2 2 196 -2 9 1457 1394 66 16 21 chr5 114394082 114394269 -38142990 + B2_Mm2 SINE B2 1 186 -9 9 1457 180 0 0 0 chr5 114395508 114395528 -38141731 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 9 1457 276 53 0 0 chr5 114396913 114396951 -38140308 + (G)n Simple_repeat Simple_repeat 1 38 0 9 1457 1198 72 102 0 chr5 114397395 114397562 -38139697 + B2_Mm2 SINE B2 4 187 -8 9 1457 264 100 0 0 chr5 114397591 114397631 -38139628 - B2_Mm2 SINE B2 -154 41 2 9 1457 445 284 42 79 chr5 114397659 114397873 -38139386 - ID_B1 SINE B4 -16 208 3 9 1457 1388 61 61 0 chr5 114397919 114398100 -38139159 + B2_Mm2 SINE B2 2 193 -2 9 1457 280 281 87 9 chr5 114398156 114398271 -38138988 - Lx8 LINE L1 -103 7370 7247 9 1457 1145 62 0 20 chr5 114399133 114399282 -38137977 + B1_Mus1 SINE Alu 3 148 0 9 1457 229 421 18 0 chr5 114399775 114399889 -38137370 - PB1 SINE Alu -11 116 1 9 1457 377 261 75 55 chr5 114399900 114400046 -38137213 - L1M3 LINE L1 -396 5775 5627 9 1457 180 0 0 0 chr5 114402917 114402937 -38134322 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 1457 206 0 0 65 chr5 114403685 114403716 -38133543 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1457 232 186 0 0 chr5 114403820 114403863 -38133396 + B1F SINE Alu 28 70 -79 9 1457 198 0 0 0 chr5 114403915 114403937 -38133322 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 9 1457 1144 94 111 0 chr5 114404057 114404228 -38133031 + B2_Mm1t SINE B2 1 190 -3 9 1457 364 233 70 0 chr5 114404849 114404935 -38132324 + PB1D7 SINE Alu 21 112 -8 9 1457 278 68 0 43 chr5 114404959 114405005 -38132254 + (TATG)n Simple_repeat Simple_repeat 2 45 0 9 1457 210 37 0 0 chr5 114405245 114405272 -38131987 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 9 1457 930 90 104 0 chr5 114405284 114405418 -38131841 - B1_Mus1 SINE Alu 0 148 1 9 1457 436 186 60 30 chr5 114406294 114406394 -38130865 + B1F SINE Alu 43 145 -4 9 1457 22 0 0 0 chr5 114406460 114406482 -38130777 + AT_rich Low_complexity Low_complexity 1 22 0 9 1457 551 199 93 22 chr5 114406506 114406645 -38130614 - B1_Mur1 SINE Alu 0 149 1 9 1457 697 251 50 0 chr5 114406651 114406830 -38130429 - B3 SINE B2 -28 188 1 9 1457 234 0 0 0 chr5 114406850 114406876 -38130383 + (TTA)n Simple_repeat Simple_repeat 2 27 0 9 1457 369 0 0 0 chr5 114407257 114407298 -38129961 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1457 260 212 30 0 chr5 114407318 114407384 -38129875 + G-rich Low_complexity Low_complexity 3 70 0 9 1457 228 216 0 0 chr5 114407534 114407585 -38129674 + (TA)n Simple_repeat Simple_repeat 2 52 0 9 1457 234 0 0 0 chr5 114407585 114407611 -38129648 + (GA)n Simple_repeat Simple_repeat 2 27 0 9 1457 261 0 0 0 chr5 114408349 114408378 -38128881 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1457 1182 139 115 34 chr5 114408389 114408597 -38128662 + URR1B DNA MER1_type 1 225 0 9 1457 222 118 0 0 chr5 114409728 114409762 -38127497 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1457 180 0 0 0 chr5 114410320 114410340 -38126919 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 9 1457 1226 34 7 20 chr5 114410375 114410525 -38126734 - B1_Mus1 SINE Alu 0 148 1 9 1457 297 0 0 0 chr5 114410941 114410974 -38126285 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1457 947 205 77 0 chr5 114411130 114411325 -38125934 - B3 SINE B2 -6 210 1 9 1457 243 0 0 0 chr5 114411813 114411840 -38125419 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 9 1457 204 205 0 0 chr5 114412101 114412140 -38125119 + GA-rich Low_complexity Low_complexity 1 39 0 9 1457 909 154 179 36 chr5 114412247 114412442 -38124817 + URR1B DNA MER1_type 3 225 0 9 1457 25 0 0 0 chr5 114412779 114412804 -38124455 + GC_rich Low_complexity Low_complexity 1 25 0 9 1457 515 213 72 72 chr5 114413468 114413635 -38123624 - B2_Mm2 SINE B2 -6 189 23 9 1457 190 224 100 50 chr5 114414303 114414383 -38122876 - L2b LINE L2 -34 3341 3258 9 1457 954 60 7 7 chr5 114414406 114414541 -38122718 + B2_Mm2 SINE B2 1 135 -60 9 1457 264 265 0 29 chr5 114414730 114414800 -38122459 + PB1D10 SINE Alu 1 68 -49 9 1457 243 0 0 0 chr5 114416839 114416866 -38120393 + (CACAC)n Simple_repeat Simple_repeat 1 27 0 9 1457 1224 42 0 0 chr5 114417298 114417442 -38119817 + B1_Mus1 SINE Alu 5 148 0 9 1457 234 328 0 0 chr5 114417472 114417536 -38119723 - PB1D7 SINE Alu -55 65 2 9 1457 614 285 98 11 chr5 114417561 114417735 -38119524 - B3A SINE B2 -3 195 7 9 1457 306 286 52 0 chr5 114418132 114418209 -38119050 + ID4 SINE ID 1 81 -2 9 1457 245 0 86 0 chr5 114418209 114418244 -38119015 + (CAAAAA)n Simple_repeat Simple_repeat 1 38 0 9 1457 902 241 94 12 chr5 114418845 114419101 -38118158 - B4 SINE B4 0 292 16 9 1457 480 137 156 64 chr5 114419143 114419252 -38118007 - PB1D7 SINE Alu 0 120 2 9 1457 330 240 34 111 chr5 114419378 114419495 -38117764 - B1F1 SINE Alu 0 149 42 9 1457 247 333 14 27 chr5 114421183 114421195 -38116064 + ID4_ SINE ID 5 45 -38 9 1457 248 273 18 0 chr5 114421195 114421250 -38116009 + tRNA-Ala-GCY_ tRNA tRNA 9 64 -11 9 1457 423 92 0 0 chr5 114421261 114421326 -38115933 + (CA)n Simple_repeat Simple_repeat 2 66 0 9 1457 234 252 0 0 chr5 114421327 114421426 -38115833 + (CAGA)n Simple_repeat Simple_repeat 2 100 0 9 1457 258 95 0 0 chr5 114421444 114421486 -38115773 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 9 1457 711 238 157 0 chr5 114421606 114421791 -38115468 + B3 SINE B2 2 215 -1 9 1457 519 166 19 0 chr5 114422420 114422520 -38114739 + B3 SINE B2 6 116 -77 9 1457 2793 77 4 117 chr5 114423305 114423760 -38113499 + MTB_Mm LTR MaLR 4 407 0 9 1458 232 121 0 0 chr5 114426505 114426538 -38110721 + B1_Mus1 SINE Alu 2 34 -114 9 1458 408 88 0 0 chr5 114426539 114426596 -38110663 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1458 315 200 31 0 chr5 114426600 114426665 -38110594 - RSINE1 SINE B4 -25 140 74 9 1458 229 89 174 0 chr5 114427973 114428030 -38109229 + B1_Mur2 SINE Alu 56 124 -25 9 1458 529 242 90 73 chr5 114428737 114428915 -38108344 + ID_B1 SINE B4 8 188 -36 9 1458 237 179 0 0 chr5 114428971 114429010 -38108249 + L1MC4a LINE L1 7241 7279 -603 9 1458 204 40 0 0 chr5 114429046 114429071 -38108188 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 0 9 1458 1295 21 0 0 chr5 114429076 114429221 -38108038 + B1_Mus1 SINE Alu 1 145 -3 9 1458 243 0 0 0 chr5 114429221 114429248 -38108011 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9 1458 551 175 0 0 chr5 114429405 114429508 -38107751 + PB1D9 SINE Alu 17 119 -1 9 1458 396 266 18 35 chr5 114429882 114429995 -38107264 - PB1D10 SINE Alu 0 117 7 9 1458 225 266 15 45 chr5 114429941 114430008 -38107251 - B4A SINE B4 -146 146 82 9 1458 392 269 9 9 chr5 114430543 114430652 -38106607 - PB1 SINE Alu -2 125 17 9 1458 206 400 0 0 chr5 114430715 114430780 -38106479 + L4 LINE RTE 1786 1850 -179 9 1458 362 149 12 98 chr5 114430859 114430941 -38106318 + RSINE1 SINE B4 50 124 -41 9 1458 369 0 0 0 chr5 114430941 114430982 -38106277 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1458 470 338 30 0 chr5 114431039 114431172 -38106087 + RSINE1 SINE B4 12 148 -17 9 1458 381 43 0 0 chr5 114432386 114432433 -38104826 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1458 300 302 0 95 chr5 114432436 114432531 -38104728 - RSINE1 SINE B4 -22 143 58 9 1458 351 292 36 36 chr5 114432574 114432684 -38104575 - PB1D10 SINE Alu -7 110 1 9 1458 191 61 30 0 chr5 114432770 114432803 -38104456 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 9 1458 627 70 0 0 chr5 114433017 114433103 -38104156 + L1_Mus2 LINE L1 6480 6565 -1 9 1458 230 0 0 32 chr5 114433913 114433944 -38103315 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 1458 284 67 22 0 chr5 114434405 114434450 -38102809 - B1_Mus1 SINE Alu -101 47 2 9 1458 900 28 0 0 chr5 114435360 114435467 -38101792 + (GAA)n Simple_repeat Simple_repeat 2 108 0 9 1458 279 0 0 0 chr5 114435628 114435659 -38101600 + (CACCC)n Simple_repeat Simple_repeat 4 34 0 9 1458 419 243 27 36 chr5 114436306 114436417 -38100842 - PB1D10 SINE Alu -1 116 7 9 1458 1272 41 0 0 chr5 114437163 114437310 -38099949 + B1_Mm SINE Alu 1 147 0 9 1458 207 0 0 0 chr5 114437310 114437333 -38099926 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1458 1281 194 125 43 chr5 114437445 114437790 -38099469 + BGLII_B LTR ERVK 1 373 -68 1 1458 769 133 54 94 chr5 114437897 114438046 -38099213 - B1_Mus2 SINE Alu 0 147 5 1 1458 973 243 34 0 chr5 114438083 114438289 -38098970 - B3 SINE B2 -2 214 2 1 1458 2369 46 0 0 chr5 114438306 114438590 -38098669 + L1Md_A LINE L1 6299 6582 0 1 1458 732 150 15 30 chr5 114438635 114438766 -38098493 + B1_Mus2 SINE Alu 19 147 0 1 1458 470 214 80 0 chr5 114438903 114439015 -38098244 + RSINE1 SINE B4 1 121 -44 1 1458 234 116 0 0 chr5 114439016 114439059 -38098200 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1458 256 244 141 0 chr5 114439349 114439427 -38097832 - B1F SINE Alu -52 97 9 1 1458 423 184 0 0 chr5 114439443 114439519 -38097740 - B1_Mur1 SINE Alu -17 132 57 1 1458 229 257 86 95 chr5 114439444 114439560 -38097699 - MT2B LTR ERVL -324 277 163 1 1458 234 125 20 20 chr5 114440816 114440865 -38096394 + MER20 DNA MER1_type 87 135 -84 1 1458 667 233 45 40 chr5 114441952 114442153 -38095106 + B3 SINE B2 1 202 -14 1 1458 261 57 0 0 chr5 114442242 114442277 -38094982 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1 1458 324 278 167 5 chr5 114442325 114442535 -38094724 + L1MB8 LINE L1 5787 6030 -148 1 1458 360 0 0 0 chr5 114442822 114442862 -38094397 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 1 1458 27 73 0 0 chr5 114443741 114443796 -38093463 + GC_rich Low_complexity Low_complexity 1 55 0 1 1458 244 294 0 0 chr5 114443796 114443864 -38093395 + C-rich Low_complexity Low_complexity 1 68 0 1 1458 21 0 0 0 chr5 114443928 114443949 -38093310 + GC_rich Low_complexity Low_complexity 1 21 0 1 1458 25 0 0 0 chr5 114444747 114444772 -38092487 + AT_rich Low_complexity Low_complexity 1 25 0 1 1458 564 200 0 0 chr5 114445211 114445341 -38091918 + (TG)n Simple_repeat Simple_repeat 1 130 0 1 1458 2020 121 40 9 chr5 114445578 114445899 -38091360 + MTC LTR MaLR 1 331 -90 1 1458 924 259 82 26 chr5 114445899 114446240 -38091019 + RLTR9A LTR ERVK 1 360 -8 1 1458 611 140 10 10 chr5 114446246 114446347 -38090912 + MTC LTR MaLR 321 421 0 1 1458 285 29 0 0 chr5 114446840 114446874 -38090385 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1458 670 217 38 132 chr5 114447173 114447385 -38089874 + B3 SINE B2 1 192 -3 1 1458 1245 81 12 0 chr5 114447677 114447850 -38089409 + B2_Mm2 SINE B2 2 176 -19 1 1458 1177 48 0 0 chr5 114447850 114447996 -38089263 + B1_Mus2 SINE Alu 1 147 0 1 1458 1597 31 0 0 chr5 114448000 114448192 -38089067 + B2_Mm1a SINE B2 2 193 0 1 1458 210 91 0 0 chr5 114448197 114448230 -38089029 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1458 437 219 31 0 chr5 114448244 114448340 -38088919 - B1F2 SINE Alu -49 100 2 1 1458 270 232 59 69 chr5 114448255 114448357 -38088902 - MT2B LTR ERVL -357 244 144 1 1458 258 47 421 34 chr5 114448414 114448507 -38088752 - B2_Mm2 SINE B2 -3 192 64 1 1458 252 0 0 0 chr5 114448550 114448578 -38088681 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1 1458 1102 96 0 0 chr5 114448578 114448735 -38088524 - B2_Mm2 SINE B2 -38 157 1 1 1458 553 338 91 23 chr5 114448735 114448954 -38088305 + B4A SINE B4 56 289 -3 1 1458 222 246 35 0 chr5 114448957 114449014 -38088245 + (CATG)n Simple_repeat Simple_repeat 4 62 0 1 1458 432 368 0 0 chr5 114449178 114449333 -38087926 + (GCCTG)n Simple_repeat Simple_repeat 5 159 0 1 1458 777 137 7 35 chr5 114449409 114449553 -38087706 - B1_Mur2 SINE Alu 0 149 10 1 1458 231 346 0 0 chr5 114449597 114449675 -38087584 - MIR SINE MIR -122 140 63 1 1458 195 69 0 0 chr5 114449758 114449787 -38087472 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1458 317 189 36 80 chr5 114450075 114450213 -38087046 + G-rich Low_complexity Low_complexity 6 137 0 1 1458 2085 247 120 21 chr5 114450224 114450422 -38086837 - Lx8 LINE L1 -504 6969 6763 1 1458 3073 56 2 0 chr5 114450422 114450817 -38086442 + MTB LTR MaLR 1 396 -4 1 1458 2085 247 120 21 chr5 114450817 114451275 -38085984 - Lx8 LINE L1 -711 6762 6248 1 1458 1468 49 0 5 chr5 114451361 114451545 -38085714 + B2_Mm2 SINE B2 3 185 -10 1 1458 771 182 50 15 chr5 114451599 114451781 -38085478 - B3 SINE B2 0 193 1 1 1458 397 263 8 41 chr5 114451883 114452006 -38085253 + PB1D7 SINE Alu 1 119 -1 1 1458 627 14 0 0 chr5 114452016 114452088 -38085171 + (GA)n Simple_repeat Simple_repeat 1 72 0 1 1458 544 302 28 0 chr5 114452101 114452280 -38084979 + ID_B1 SINE B4 24 207 -17 1 1458 293 155 40 66 chr5 114452531 114452683 -38084576 + (CAGAGA)n Simple_repeat Simple_repeat 2 149 0 1 1458 634 275 0 0 chr5 114454260 114454409 -38082850 - RSINE1 SINE B4 -7 158 10 1 1458 214 319 63 11 chr5 114454442 114454537 -38082722 + MIRb SINE MIR 167 266 -2 1 1458 407 175 8 0 chr5 114455076 114455196 -38082063 + CT-rich Low_complexity Low_complexity 2 122 0 1 1458 194 196 184 14 chr5 114455707 114455804 -38081455 + MIR SINE MIR 118 237 -31 1 1458 520 227 7 0 chr5 114455804 114456087 -38081172 + (CA)n Simple_repeat Simple_repeat 1 285 0 1 1458 357 24 0 0 chr5 114456141 114456183 -38081076 + (CCCCCA)n Simple_repeat Simple_repeat 1 42 0 1 1458 491 248 30 0 chr5 114456459 114456560 -38080699 - PB1D10 SINE Alu -8 109 6 1 1458 218 208 37 19 chr5 114456562 114456616 -38080643 + CT-rich Low_complexity Low_complexity 1 55 0 1 1458 367 268 0 20 chr5 114456617 114456716 -38080543 - PB1D10 SINE Alu -2 115 19 1 1458 214 223 145 75 chr5 114456788 114456929 -38080330 + MIR3 SINE MIR 13 171 -105 1 1458 262 293 0 0 chr5 114457999 114458057 -38079202 + G-rich Low_complexity Low_complexity 1 58 0 1 1458 387 312 71 51 chr5 114458497 114458693 -38078566 + MIRb SINE MIR 7 206 -62 1 1458 1507 27 27 0 chr5 114458698 114458884 -38078375 + B2_Mm1a SINE B2 2 192 -1 1 1458 183 42 0 0 chr5 114458890 114458914 -38078345 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1458 470 247 166 6 chr5 114459276 114459451 -38077808 + B3 SINE B2 1 203 -13 1 1458 1115 88 0 0 chr5 114459482 114459630 -38077629 + B1_Mus1 SINE Alu 1 148 0 1 1458 516 235 82 11 chr5 114460245 114460384 -38076875 + B1F2 SINE Alu 1 146 -3 1 1458 1148 55 7 0 chr5 114460390 114460536 -38076723 + B1_Mus1 SINE Alu 2 148 0 1 1458 420 71 0 0 chr5 114460714 114460770 -38076489 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1458 529 188 143 38 chr5 114461043 114461176 -38076083 - B1_Mur2 SINE Alu -1 148 2 1 1458 333 282 101 40 chr5 114461052 114461200 -38076059 - B4 SINE B4 -73 219 63 1 1458 1104 65 0 0 chr5 114461696 114461835 -38075424 + B1_Mus2 SINE Alu 2 140 -7 1 1458 1119 16 0 0 chr5 114461835 114461964 -38075295 + (GGAGAA)n Simple_repeat Simple_repeat 5 133 0 1 1458 845 107 0 37 chr5 114461974 114462110 -38075149 + B2_Mm2 SINE B2 2 132 -63 1 1458 572 143 122 26 chr5 114462125 114462240 -38075019 - B1_Mur4 SINE Alu 0 150 25 1 1458 423 0 0 0 chr5 114462365 114462412 -38074847 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1458 411 73 0 0 chr5 114463102 114463157 -38074102 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1 1458 438 121 22 0 chr5 114463157 114463248 -38074011 - L1_Mus3 LINE L1 -7 6631 6539 1 1458 911 77 44 4 chr5 114463250 114463529 -38073730 + (TCTA)n Simple_repeat Simple_repeat 1 290 0 1 1458 357 345 74 17 chr5 114463655 114463885 -38073374 + MIR SINE MIR 17 259 -3 1 1458 967 200 26 31 chr5 114464033 114464373 -38072886 - RMER10A LTR ERVL -8 434 1 1 1458 297 193 36 0 chr5 114464835 114464910 -38072349 - MIRc SINE MIR -126 150 71 1 1458 290 308 11 11 chr5 114465520 114465612 -38071647 - L1M4 LINE L1 -1987 4159 4068 1 1458 386 203 122 0 chr5 114465839 114465937 -38071322 - PB1D9 SINE Alu -20 130 25 1 1458 934 264 91 26 chr5 114466026 114466463 -38070796 - RMER15 LTR ERVL 0 575 1 1 1458 284 115 358 36 chr5 114466587 114466696 -38070563 - B2_Mm2 SINE B2 -4 191 48 1 1458 1055 110 18 0 chr5 114466748 114466911 -38070348 - B2_Mm1t SINE B2 -14 179 14 1 1458 1124 68 0 13 chr5 114467045 114467194 -38070065 + B1_Mm SINE Alu 1 147 0 1 1458 978 95 7 39 chr5 114468366 114468519 -38068740 + B1_Mus1 SINE Alu 1 148 0 1 1458 197 33 33 0 chr5 114468519 114468549 -38068710 + (CAAAAA)n Simple_repeat Simple_repeat 5 35 0 1 1458 658 190 5 27 chr5 114468571 114468755 -38068504 + GA-rich Low_complexity Low_complexity 1 180 0 1 1458 340 337 77 39 chr5 114469366 114469573 -38067686 - MIR SINE MIR -10 252 38 1 1458 351 305 57 19 chr5 114470560 114470717 -38066542 - HAL1-2a_MD LINE L1 -517 2507 2345 1 1458 2042 100 7 9 chr5 114471208 114471559 -38065700 - ORR1A2 LTR MaLR -8 359 1 1 1458 522 148 0 0 chr5 114471559 114471647 -38065612 - ORR1A1 LTR MaLR -258 88 1 1 1458 522 290 109 70 chr5 114472001 114472288 -38064971 + B4 SINE B4 9 292 0 1 1458 412 248 10 3 chr5 114472308 114472620 -38064639 + (CA)n Simple_repeat Simple_repeat 1 314 0 1 1458 299 235 7 26 chr5 114472624 114472666 -38064593 + (CATA)n Simple_repeat Simple_repeat 4 44 0 1 1458 4318 137 40 28 chr5 114472666 114473465 -38063794 + RMER17D2 LTR ERVK 1 809 0 1 1458 299 235 7 26 chr5 114473465 114473575 -38063684 + (CATA)n Simple_repeat Simple_repeat 1 109 0 1 1458 300 148 0 0 chr5 114473629 114473690 -38063569 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1458 262 154 37 37 chr5 114474997 114475078 -38062181 + C-rich Low_complexity Low_complexity 3 83 0 1 1458 224 148 18 36 chr5 114475361 114475417 -38061842 + GA-rich Low_complexity Low_complexity 1 55 0 1 1458 640 283 7 7 chr5 114475718 114475871 -38061388 - RSINE1 SINE B4 -2 163 11 1 1458 401 144 11 0 chr5 114476012 114476102 -38061157 + CT-rich Low_complexity Low_complexity 2 92 0 1 1458 493 235 66 16 chr5 114476121 114476242 -38061017 - ID_B1 SINE B4 -2 222 96 1 1458 197 196 20 0 chr5 114476405 114476456 -38060803 + GA-rich Low_complexity Low_complexity 1 52 0 1 1458 558 155 0 0 chr5 114476628 114476725 -38060534 + GA-rich Low_complexity Low_complexity 6 102 0 1 1458 249 216 152 43 chr5 114478575 114478667 -38058592 + MT2B2 LTR ERVL 155 256 -328 1 1458 353 227 22 43 chr5 114478587 114478679 -38058580 + PB1D7 SINE Alu 23 112 -8 1 1458 260 272 117 0 chr5 114478690 114478793 -38058466 + PB1D10 SINE Alu 2 116 -1 1 1458 260 261 216 31 chr5 114479459 114479621 -38057638 + L1MB5 LINE L1 5926 6117 -57 1 1458 217 326 97 15 chr5 114479753 114479887 -38057372 - FAM SINE Alu -26 285 141 1 1458 225 108 0 0 chr5 114480635 114480672 -38056587 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1458 682 225 82 6 chr5 114480827 114480997 -38056262 - B3A SINE B2 -15 183 1 1 1458 221 273 0 0 chr5 114481128 114481183 -38056076 - ID4 SINE ID -1 82 28 1 1458 393 219 7 49 chr5 114481404 114481548 -38055711 + C-rich Low_complexity Low_complexity 3 140 0 1 1458 847 182 159 8 chr5 114482277 114482465 -38054794 + ORR1C1 LTR MaLR 8 229 -149 1 1458 252 0 0 0 chr5 114482465 114482493 -38054766 + (CCTG)n Simple_repeat Simple_repeat 3 30 0 1 1458 847 168 153 5 chr5 114482493 114482562 -38054697 + ORR1C1 LTR MaLR 230 315 -63 1 1458 184 392 63 8 chr5 114483177 114483303 -38053956 + MIRc SINE MIR 24 156 -112 1 1458 42 65 0 0 chr5 114483355 114483432 -38053827 + AT_rich Low_complexity Low_complexity 1 77 0 1 1458 700 223 0 0 chr5 114483466 114483596 -38053663 + B1_Mur2 SINE Alu 20 149 0 1 1458 975 107 0 20 chr5 114483598 114483750 -38053509 + B1_Mur4 SINE Alu 1 149 -1 1 1458 320 117 25 25 chr5 114484279 114484358 -38052901 + GA-rich Low_complexity Low_complexity 4 82 0 1 1458 257 339 70 14 chr5 114484433 114484613 -38052646 + LTR40a LTR ERVL 22 210 -252 1 1458 266 235 44 0 chr5 114484788 114484856 -38052403 + MLT1A1 LTR MaLR 322 392 -16 1 1458 234 0 0 0 chr5 114485061 114485087 -38052172 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1458 282 87 0 0 chr5 114485611 114485657 -38051602 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1458 600 14 0 0 chr5 114486246 114486315 -38050944 + (TC)n Simple_repeat Simple_repeat 2 70 0 1 1458 180 380 57 8 chr5 114486953 114487075 -38050184 + MER5B DNA MER1_type 20 147 -31 1 1458 186 43 0 0 chr5 114487670 114487693 -38049566 + (TTTC)n Simple_repeat Simple_repeat 4 26 0 1 1458 261 0 0 0 chr5 114487696 114487725 -38049534 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1458 1026 111 0 0 chr5 114487737 114487881 -38049378 - B1_Mur4 SINE Alu -5 145 2 1 1458 517 172 2 0 chr5 114487909 114488016 -38049243 + B1_Mur1 SINE Alu 42 149 0 1 1458 280 250 0 0 chr5 114488080 114488144 -38049115 + PB1D10 SINE Alu 17 80 -37 1 1458 220 254 42 0 chr5 114488167 114488238 -38049021 - BC1_Mm scRNA scRNA -41 111 38 1 1458 775 145 18 18 chr5 114489234 114489403 -38047856 + T-rich Low_complexity Low_complexity 1 169 0 1 1458 435 119 0 0 chr5 114489479 114489546 -38047713 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 1 1458 718 69 10 0 chr5 114489548 114489649 -38047610 - B1_Mus2 SINE Alu -1 146 45 1 1458 248 190 17 33 chr5 114489604 114489664 -38047595 - 4.5SRNA scRNA scRNA -8 86 28 1 1458 317 303 16 32 chr5 114489817 114489943 -38047316 + RMER5 LTR ERV1 119 242 -292 1 1458 786 91 45 3 chr5 114489947 114490235 -38047024 + (TAGA)n Simple_repeat Simple_repeat 1 300 0 1 1458 196 279 0 0 chr5 114490592 114490635 -38046624 + L2c LINE L2 3338 3380 -7 1 1458 221 197 16 0 chr5 114490849 114490910 -38046349 + G-rich Low_complexity Low_complexity 2 63 0 1 1458 263 359 0 28 chr5 114491517 114491623 -38045636 + B4A SINE B4 190 292 0 1 1458 641 194 0 6 chr5 114491978 114492159 -38045100 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1458 949 111 42 0 chr5 114492645 114492789 -38044470 + B1_Mur4 SINE Alu 1 150 0 1 1458 545 163 0 0 chr5 114493359 114493451 -38043808 - PB1D10 SINE Alu -8 109 18 1 1458 340 296 59 21 chr5 114493465 114493675 -38043584 - L1MB3 LINE L1 -221 5962 5746 1 1458 457 258 111 48 chr5 114493687 114494021 -38043238 + RLTR15 LTR ERVK 1 355 -4 1 1458 327 96 0 0 chr5 114494401 114494453 -38042806 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1458 244 258 0 31 chr5 114494839 114494903 -38042356 + B1F SINE Alu 80 141 -8 1 1458 274 246 18 0 chr5 114494919 114494976 -38042283 + ID4 SINE ID 2 59 -24 1 1458 1249 136 22 18 chr5 114494976 114495201 -38042058 + URR1A DNA MER1_type 1 226 0 1 1458 264 279 35 92 chr5 114495201 114495230 -38042029 + ID4_ SINE ID 60 83 0 1 1458 936 183 72 0 chr5 114495239 114495419 -38041840 + B2_Mm2 SINE B2 3 195 0 1 1458 222 204 0 22 chr5 114495772 114495817 -38041442 - B1F SINE Alu -15 134 91 1 1458 22 0 0 0 chr5 114495910 114495932 -38041327 + AT_rich Low_complexity Low_complexity 1 22 0 1 1458 1160 48 7 0 chr5 114495936 114496081 -38041178 - B1_Mus1 SINE Alu 0 148 3 1 1458 231 315 75 16 chr5 114496404 114496591 -38040668 - L1MC4 LINE L1 -745 7297 7100 1 1458 560 242 0 79 chr5 114496592 114496731 -38040528 + RSINE1 SINE B4 2 129 -36 1 1458 595 236 0 41 chr5 114497013 114497159 -38040100 + B3 SINE B2 66 205 -11 1 1458 261 338 0 0 chr5 114497186 114497257 -38040002 - ID4_ SINE ID -9 74 4 1 1458 373 266 60 10 chr5 114497280 114497452 -38039807 - B3A SINE B2 -6 189 3 1 1458 375 303 0 9 chr5 114498259 114498369 -38038890 - B1F1 SINE Alu -36 113 5 1 1458 3195 248 83 40 chr5 114499018 114499997 -38037262 + RMER15-int LTR ERVL 1337 2357 -2642 1 1458 3057 228 75 37 chr5 114500023 114500932 -38036327 + RMER15-int LTR ERVL 4030 4973 -26 1 1458 2705 147 65 63 chr5 114500932 114501425 -38035834 + RMER15 LTR ERVL 1 485 -90 1 1458 2649 127 90 7 chr5 114501425 114501869 -38035390 + RLTR28B LTR ERVL 1 481 0 2 1458 2705 147 65 63 chr5 114501869 114501949 -38035310 + RMER15 LTR ERVL 486 575 0 1 1458 540 258 132 0 chr5 114502749 114502916 -38034343 - ID_B1 SINE B4 -4 220 32 3 1458 272 284 107 10 chr5 114502969 114503072 -38034187 - MIR SINE MIR -125 137 25 4 1458 422 178 11 0 chr5 114503174 114503264 -38033995 + (TA)n Simple_repeat Simple_repeat 2 92 0 5 1458 1197 69 0 0 chr5 114503388 114503532 -38033727 + B1_Mus2 SINE Alu 2 145 -2 6 1458 270 81 0 0 chr5 114503533 114503570 -38033689 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 7 1458 780 206 14 14 chr5 114503792 114503940 -38033319 - B1_Mur1 SINE Alu 0 149 2 8 1458 389 320 28 44 chr5 114504210 114504390 -38032869 - MER2 DNA MER2_type -44 301 125 9 1458 267 31 0 0 chr5 114504753 114504785 -38032474 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1458 727 81 205 9 chr5 114504787 114504899 -38032360 - B1_Mus1 SINE Alu -12 136 3 1 1458 1374 112 0 0 chr5 114504904 114505091 -38032168 - B2_Mm2 SINE B2 -8 187 1 1 1458 733 206 20 0 chr5 114505122 114505268 -38031991 + B3 SINE B2 1 149 -67 1 1458 238 256 57 23 chr5 114505290 114505378 -38031881 + MTEb LTR MaLR 269 359 -20 1 1458 325 278 85 79 chr5 114505541 114505705 -38031554 - Charlie8 DNA MER1_type -2226 202 38 1 1458 234 200 99 14 chr5 114506048 114506119 -38031140 + PB1 SINE Alu 49 125 -2 1 1458 662 240 116 32 chr5 114506288 114506477 -38030782 - ID_B1 SINE B4 -18 206 2 1 1458 194 339 32 0 chr5 114506530 114506592 -38030667 - MIRc SINE MIR -112 156 93 1 1458 432 0 0 0 chr5 114506635 114506683 -38030576 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1458 428 286 39 45 chr5 114507480 114507659 -38029600 - MER20 DNA MER1_type -7 212 35 2 1458 313 219 0 110 chr5 114507812 114507894 -38029365 + RSINE1 SINE B4 93 165 0 2 1458 477 0 0 0 chr5 114507899 114507952 -38029307 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1458 2356 66 23 86 chr5 114508006 114508285 -38028974 + ORR1A2 LTR MaLR 1 286 -41 2 1458 1099 103 0 7 chr5 114508285 114508431 -38028828 + B1_Mus2 SINE Alu 2 146 -1 2 1458 2356 66 23 86 chr5 114508431 114508500 -38028759 + ORR1A2 LTR MaLR 287 327 0 2 1458 1380 159 62 8 chr5 114508670 114508930 -38028329 + ORR1D1 LTR MaLR 1 274 -100 2 1458 218 250 0 0 chr5 114509269 114509321 -38027938 + C-rich Low_complexity Low_complexity 1 52 0 2 1458 209 33 0 32 chr5 114509362 114509393 -38027866 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 2 1458 327 313 0 57 chr5 114509410 114509532 -38027727 - PB1D7 SINE Alu 0 120 6 2 1458 875 201 129 15 chr5 114509643 114509845 -38027414 + URR1B DNA MER1_type 1 225 0 2 1458 509 216 25 67 chr5 114510231 114510350 -38026909 - PB1D10 SINE Alu -31 118 5 3 1458 243 146 0 0 chr5 114510400 114510441 -38026818 + (TTC)n Simple_repeat Simple_repeat 2 42 0 3 1458 1260 54 0 0 chr5 114510441 114510589 -38026670 - B1_Mus1 SINE Alu 0 148 1 3 1458 284 284 0 0 chr5 114510594 114510675 -38026584 - MIR SINE MIR -104 158 78 3 1458 180 0 0 0 chr5 114510759 114510779 -38026480 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 1458 517 122 174 0 chr5 114510780 114510878 -38026381 - B1_Mm SINE Alu -13 134 20 3 1458 424 277 6 6 chr5 114511038 114511216 -38026043 + CT-rich Low_complexity Low_complexity 1 178 0 3 1458 432 168 30 0 chr5 114511251 114511352 -38025907 + CT-rich Low_complexity Low_complexity 2 105 0 3 1458 666 165 0 0 chr5 114511902 114512011 -38025248 + MTD LTR MaLR 1 109 -310 3 1458 795 75 0 0 chr5 114512020 114512127 -38025132 + (TCCC)n Simple_repeat Simple_repeat 4 110 0 3 1458 231 204 0 0 chr5 114512131 114512175 -38025084 + T-rich Low_complexity Low_complexity 3 46 0 3 1458 867 156 7 14 chr5 114512209 114512352 -38024907 - B1_Mur4 SINE Alu -8 142 1 4 1458 498 75 0 0 chr5 114512364 114512431 -38024828 + (TTCTC)n Simple_repeat Simple_repeat 4 70 0 4 1458 246 94 0 0 chr5 114512431 114512463 -38024796 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 4 1458 1187 88 0 0 chr5 114512463 114512611 -38024648 - B1_Mus1 SINE Alu 0 148 1 4 1458 1214 230 35 35 chr5 114512612 114512927 -38024332 + MTD LTR MaLR 105 419 0 3 1458 594 194 47 27 chr5 114513287 114513435 -38023824 - B3 SINE B2 -2 214 64 4 1458 271 242 30 0 chr5 114513450 114513516 -38023743 - PB1D10 SINE Alu -2 115 48 4 1458 270 232 0 80 chr5 114513528 114513603 -38023656 + RSINE1 SINE B4 97 165 0 4 1458 228 287 0 0 chr5 114513611 114513712 -38023547 + (CA)n Simple_repeat Simple_repeat 1 101 0 4 1458 416 235 7 0 chr5 114513725 114513861 -38023398 + (CA)n Simple_repeat Simple_repeat 1 137 0 4 1458 556 214 0 11 chr5 114513882 114514062 -38023197 + (CA)n Simple_repeat Simple_repeat 1 178 0 4 1458 1392 79 0 26 chr5 114515092 114515286 -38021973 + B2_Mm2 SINE B2 2 190 -5 4 1458 192 184 0 0 chr5 114515312 114515361 -38021898 + (CAT)n Simple_repeat Simple_repeat 2 50 0 4 1458 195 139 0 0 chr5 114516489 114516525 -38020734 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 5 1458 347 239 43 60 chr5 114516531 114516647 -38020612 - PB1D10 SINE Alu -1 116 3 5 1458 297 167 0 0 chr5 114516960 114517014 -38020245 + (ATG)n Simple_repeat Simple_repeat 3 56 0 5 1458 649 279 84 0 chr5 114517026 114517216 -38020043 - ID_B1 SINE B4 -1 223 18 5 1458 340 249 57 9 chr5 114517536 114517676 -38019583 - MIRb SINE MIR -90 178 33 5 1458 228 328 0 29 chr5 114518325 114518394 -38018865 - ID4_ SINE ID -8 75 9 5 1458 498 276 20 40 chr5 114518401 114518552 -38018707 - B1F SINE Alu -1 148 1 5 1458 379 255 272 15 chr5 114518558 114518753 -38018506 - L1M4 LINE L1 -362 5821 5576 5 1458 561 241 30 54 chr5 114518905 114519072 -38018187 - RSINE1 SINE B4 0 165 3 5 1458 305 282 68 0 chr5 114519152 114519255 -38018004 - PB1D10 SINE Alu -1 116 7 5 1458 1213 54 0 13 chr5 114519291 114519440 -38017819 - B1_Mus2 SINE Alu 0 147 1 6 1458 268 283 71 62 chr5 114519452 114519663 -38017596 - L1M4 LINE L1 -896 5250 5038 5 1458 222 283 0 0 chr5 114519672 114519718 -38017541 + (CGTG)n Simple_repeat Simple_repeat 1 46 0 6 1458 950 226 0 0 chr5 114519724 114519888 -38017371 - RSINE1 SINE B4 0 165 2 6 1458 198 240 0 0 chr5 114520707 114520757 -38016502 + (CATG)n Simple_repeat Simple_repeat 1 50 0 6 1458 211 197 29 29 chr5 114520784 114520852 -38016407 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 6 1458 225 329 0 26 chr5 114520885 114520963 -38016296 - B4A SINE B4 -3 289 214 6 1458 1244 162 54 0 chr5 114520982 114521186 -38016073 - B3 SINE B2 0 216 2 6 1458 229 313 52 37 chr5 114522453 114522589 -38014670 + L1MB8 LINE L1 5880 6017 -161 6 1458 233 59 0 0 chr5 114522608 114522642 -38014617 - MTB_Mm LTR MaLR -53 354 321 6 1458 5117 58 8 0 chr5 114522645 114523278 -38013981 - L1Md_F2 LINE L1 0 6582 5945 6 1458 392 84 7 0 chr5 114523278 114523358 -38013901 + L1Md_F2 LINE L1 5907 5987 -595 6 1458 270 292 0 0 chr5 114523772 114523837 -38013422 + (TG)n Simple_repeat Simple_repeat 1 65 0 7 1458 934 249 99 83 chr5 114523886 114524258 -38013001 - MTE2a LTR MaLR -1 378 1 7 1458 465 160 53 0 chr5 114524817 114524911 -38012348 + B3A SINE B2 2 100 -98 7 1458 281 200 77 0 chr5 114524955 114525020 -38012239 + L1MB5 LINE L1 5735 5804 -374 7 1458 830 112 13 53 chr5 114525044 114525195 -38012064 - B1_Mur4 SINE Alu 0 150 6 7 1458 336 321 51 13 chr5 114525218 114525376 -38011883 + L1MB5 LINE L1 5841 6004 -170 7 1458 347 182 26 13 chr5 114525389 114525467 -38011792 - PB1D10 SINE Alu 0 117 39 7 1458 23 0 0 0 chr5 114526542 114526565 -38010694 + AT_rich Low_complexity Low_complexity 1 23 0 7 1458 234 0 0 0 chr5 114526585 114526611 -38010648 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 7 1458 207 69 0 0 chr5 114526716 114526745 -38010514 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 7 1458 243 0 0 0 chr5 114526751 114526778 -38010481 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7 1458 1216 52 0 0 chr5 114526779 114526934 -38010325 - B2_Mm2 SINE B2 -37 158 4 8 1458 197 362 30 17 chr5 114527116 114527235 -38010024 + MIR SINE MIR 60 192 -76 8 1458 189 0 0 0 chr5 114527775 114527796 -38009463 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 1458 938 138 240 6 chr5 114527964 114528139 -38009120 - B3 SINE B2 0 216 1 8 1458 1288 34 0 0 chr5 114528215 114528362 -38008897 - B1_Mus2 SINE Alu 0 147 1 8 1458 1363 86 21 5 chr5 114528380 114528568 -38008691 - B2_Mm1a SINE B2 -2 191 1 8 1458 436 211 21 0 chr5 114529150 114529245 -38008014 + B1_Mur4 SINE Alu 54 150 0 8 1458 380 335 68 31 chr5 114529257 114529448 -38007811 - B3A SINE B2 0 198 1 8 1458 371 184 16 0 chr5 114529475 114529550 -38007709 - PB1D10 SINE Alu -35 92 7 8 1458 450 257 37 30 chr5 114529905 114530122 -38007137 - MTEa LTR MaLR -14 365 69 8 1458 1534 47 5 25 chr5 114530122 114530318 -38006941 - B2_Mm1a SINE B2 0 193 2 9 1458 235 321 0 62 chr5 114530318 114530366 -38006893 - MTEa LTR MaLR -299 68 23 8 1458 515 282 16 33 chr5 114530425 114530608 -38006651 - ORR1E-int LTR MaLR -1400 180 1 9 1458 690 287 112 41 chr5 114530608 114530922 -38006337 - ORR1E LTR MaLR -17 342 6 9 1458 318 278 54 18 chr5 114531014 114531137 -38006122 - MIRb SINE MIR -98 164 45 9 1458 599 144 80 18 chr5 114531232 114531345 -38005914 - PB1D9 SINE Alu 0 120 1 9 1458 225 304 77 43 chr5 114531585 114531702 -38005557 + MER20 DNA MER1_type 27 147 -72 9 1458 873 144 14 0 chr5 114532267 114532406 -38004853 + B1_Mur4 SINE Alu 10 150 0 9 1458 311 284 68 47 chr5 114532549 114532797 -38004462 + L1MA8 LINE L1 5837 6092 -205 9 1458 648 270 6 19 chr5 114533036 114533198 -38004061 + RSINE1 SINE B4 3 162 -3 9 1458 396 221 26 13 chr5 114533222 114533378 -38003881 + (TTAA)n Simple_repeat Simple_repeat 3 160 0 9 1458 567 258 6 76 chr5 114533619 114533791 -38003468 + RSINE1 SINE B4 3 162 -3 9 1458 364 293 15 75 chr5 114533950 114534021 -38003238 + ID_B1 SINE B4 91 159 -65 1 1458 3278 38 10 2 chr5 114534021 114534414 -38002845 + MTA_Mm LTR MaLR 1 396 0 1 1458 364 293 15 75 chr5 114534414 114534475 -38002784 + ID_B1 SINE B4 160 215 -9 1 1458 816 344 84 13 chr5 114534478 114534952 -38002307 - L1MB3 LINE L1 -27 6156 5649 1 1458 295 341 116 0 chr5 114534963 114535101 -38002158 - MER2B DNA MER2_type -10 326 173 1 1458 206 297 81 0 chr5 114535440 114535514 -38001745 - L2 LINE L2 -549 2870 2791 1 1458 195 320 86 19 chr5 114535631 114535736 -38001523 - L2 LINE L2 -610 2809 2698 1 1458 430 305 13 62 chr5 114535932 114536156 -38001103 + B3 SINE B2 2 214 -2 1 1458 223 320 21 0 chr5 114536398 114536495 -38000764 - MIRb SINE MIR -115 153 55 1 1458 818 292 58 116 chr5 114537011 114537444 -37999815 + MTD LTR MaLR 12 419 0 1 1458 508 239 0 9 chr5 114537626 114537733 -37999526 + B1_Mur2 SINE Alu 3 108 -41 1 1458 291 209 119 11 chr5 114537733 114537828 -37999431 + ID4 SINE ID 4 103 -49 1 1458 225 0 0 0 chr5 114538279 114538304 -37998955 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1458 756 259 20 35 chr5 114538389 114538589 -37998670 - B3A SINE B2 -1 197 1 1 1458 309 284 83 41 chr5 114538755 114538876 -37998383 - L1M2 LINE L1 -2937 3206 3081 1 1458 1199 75 0 0 chr5 114538876 114539023 -37998236 - B1_Mus2 SINE Alu 0 147 1 1 1458 344 176 272 49 chr5 114539123 114539251 -37998008 - MIRb SINE MIR -113 155 3 1 1458 208 307 66 73 chr5 114539251 114539296 -37997963 + MIRc SINE MIR 111 154 -114 1 1458 609 193 33 25 chr5 114539312 114539434 -37997825 - B1_Mur3 SINE Alu -13 136 14 1 1458 260 306 11 23 chr5 114539366 114539444 -37997815 - B4 SINE B4 -126 166 89 1 1458 297 128 0 0 chr5 114539444 114539491 -37997768 + (ATG)n Simple_repeat Simple_repeat 3 49 0 1 1458 307 205 179 0 chr5 114539499 114539569 -37997690 - PB1D10 SINE Alu -4 113 22 1 1458 302 227 213 25 chr5 114541945 114542067 -37995192 + B1F1 SINE Alu 3 147 -2 1 1458 449 240 9 9 chr5 114542067 114542171 -37995088 + PB1D9 SINE Alu 1 105 -15 1 1458 459 0 0 0 chr5 114542174 114542225 -37995034 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1458 446 226 169 131 chr5 114542466 114542649 -37994610 - B3A SINE B2 -8 190 1 1 1458 1003 218 48 14 chr5 114542656 114542865 -37994394 - B3 SINE B2 0 216 1 1 1458 4382 128 50 20 chr5 114542866 114543598 -37993661 - RMER6A LTR ERVK 0 756 3 1 1458 252 143 0 0 chr5 114543620 114543662 -37993597 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1 1458 501 174 10 10 chr5 114543792 114543891 -37993368 + PB1D7 SINE Alu 22 120 0 1 1458 974 172 58 26 chr5 114543896 114544087 -37993172 + B3A SINE B2 1 197 -1 1 1458 244 305 32 77 chr5 114544204 114544376 -37992883 - MIR SINE MIR -82 180 18 1 1458 528 196 0 0 chr5 114544732 114544834 -37992425 + B3A SINE B2 50 151 -47 1 1458 324 0 0 0 chr5 114544844 114544880 -37992379 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1458 2052 123 11 90 chr5 114545108 114545389 -37991870 + ORR1A4 LTR MaLR 1 270 -59 1 1458 1260 91 11 33 chr5 114545389 114545571 -37991688 + B2_Mm1t SINE B2 2 179 -14 1 1458 2052 123 11 90 chr5 114545571 114545646 -37991613 + ORR1A4 LTR MaLR 271 329 0 1 1458 278 343 30 7 chr5 114545646 114545781 -37991478 - B4 SINE B4 -152 140 3 1 1458 404 281 0 0 chr5 114547218 114547264 -37989995 + ID SINE ID 38 83 -141 1 1458 237 301 0 52 chr5 114547264 114547341 -37989918 + PB1D10 SINE Alu 3 75 -42 1 1458 610 196 0 169 chr5 114547555 114547721 -37989538 - B1_Mur4 SINE Alu 0 150 13 1 1458 345 275 56 55 chr5 114547709 114547861 -37989398 + MTE2a LTR MaLR 65 240 -179 1 1458 180 125 0 0 chr5 114547864 114547896 -37989363 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1 1458 604 287 21 27 chr5 114547923 114548109 -37989150 + MTE2a LTR MaLR 195 379 0 1 1458 541 302 0 12 chr5 114548216 114548377 -37988882 + ID_B1 SINE B4 1 159 -65 1 1458 296 297 107 27 chr5 114548384 114548622 -37988637 + L1MB7 LINE L1 5808 6065 -115 1 1458 598 261 58 0 chr5 114548664 114548802 -37988457 + RSINE1 SINE B4 3 148 -17 1 1458 561 306 222 7 chr5 114548831 114549268 -37987991 + L1MB1 LINE L1 5545 6075 -114 1 1458 417 304 0 8 chr5 114549490 114549891 -37987368 + (TG)n Simple_repeat Simple_repeat 1 397 0 1 1458 472 288 116 0 chr5 114549892 114550038 -37987221 - RSINE1 SINE B4 -1 164 2 1 1458 222 118 0 0 chr5 114550401 114550435 -37986824 + (CGG)n Simple_repeat Simple_repeat 2 35 0 1 1458 243 309 0 56 chr5 114551462 114551534 -37985725 + ID4 SINE ID 7 74 -9 1 1458 216 0 0 0 chr5 114551922 114551946 -37985313 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1458 257 328 67 52 chr5 114551974 114552109 -37985150 + B4A SINE B4 6 142 -150 1 1458 786 81 0 13 chr5 114552644 114552779 -37984480 - B1_Mus1 SINE Alu 0 148 17 1 1458 509 259 22 22 chr5 114552787 114552921 -37984338 + B1F SINE Alu 6 139 -10 1 1458 447 252 140 0 chr5 114553980 114554123 -37983136 - RSINE1 SINE B4 0 165 3 1 1458 317 109 0 18 chr5 114554188 114554244 -37983015 + (GGGGA)n Simple_repeat Simple_repeat 1 55 0 1 1458 1306 115 0 35 chr5 114554367 114554565 -37982694 - B2_Mm2 SINE B2 0 195 5 1 1458 221 257 134 60 chr5 114554710 114554731 -37982528 - B3 SINE B2 0 216 197 1 1458 860 159 14 14 chr5 114554731 114554878 -37982381 - B1_Mur2 SINE Alu -2 147 1 1 1458 309 257 134 60 chr5 114554878 114555005 -37982254 - B3A SINE B2 -20 196 57 1 1458 332 298 8 47 chr5 114555243 114555370 -37981889 - PB1 SINE Alu 0 127 6 1 1458 232 204 0 0 chr5 114555963 114556007 -37981252 - ID4 SINE ID -14 69 26 1 1459 1600 160 119 0 chr5 114557091 114557428 -37979831 - BGLII_B LTR ERVK 0 441 65 1 1459 1258 108 53 199 chr5 114557432 114557688 -37979571 - MTC LTR MaLR -133 288 81 1 1459 1156 70 0 0 chr5 114557688 114557830 -37979429 - B1_Mus1 SINE Alu -6 142 1 1 1459 1258 108 53 199 chr5 114557830 114557910 -37979349 - MTC LTR MaLR -341 80 1 1 1459 228 289 24 0 chr5 114558227 114558310 -37978949 + BC1_Mm scRNA scRNA 13 97 -55 1 1459 2010 154 16 25 chr5 114558605 114558971 -37978288 + ORR1B1 LTR MaLR 24 386 -8 1 1459 295 80 80 0 chr5 114558992 114559042 -37978217 - ORR1A3-int LTR MaLR -386 1577 1524 1 1459 347 137 99 37 chr5 114559986 114560086 -37977173 - ORR1A4 LTR MaLR -254 120 1 1 1459 1237 61 0 0 chr5 114560235 114560382 -37976877 + B1_Mm SINE Alu 1 147 0 1 1459 932 192 69 25 chr5 114560384 114560587 -37976672 - B3 SINE B2 -4 212 1 1 1459 238 352 28 0 chr5 114560835 114560943 -37976316 + L1MB3 LINE L1 6060 6170 -13 1 1459 386 279 54 54 chr5 114562273 114562293 -37974966 + ID_B1 SINE B4 65 212 -12 1 1459 526 244 62 8 chr5 114562293 114562421 -37974838 + B1F SINE Alu 3 137 -12 1 1459 273 261 95 24 chr5 114562432 114562538 -37974721 - MIRb SINE MIR -140 128 8 1 1459 696 94 0 0 chr5 114563070 114563176 -37974083 + (TG)n Simple_repeat Simple_repeat 2 107 0 1 1459 369 0 0 0 chr5 114563935 114563976 -37973283 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1459 252 0 0 0 chr5 114564413 114564441 -37972818 + (TTGG)n Simple_repeat Simple_repeat 1 28 0 1 1459 224 221 58 18 chr5 114564443 114564523 -37972736 - B1F SINE Alu -10 139 21 1 1459 265 250 125 0 chr5 114564536 114564640 -37972619 - L1M2 LINE L1 -684 5613 5497 1 1459 460 287 109 91 chr5 114564651 114564821 -37972438 - B4 SINE B4 0 292 107 1 1459 1041 120 41 66 chr5 114564821 114565017 -37972242 - B2_Mm2 SINE B2 0 195 5 1 1459 460 304 26 84 chr5 114565017 114565122 -37972137 - B4 SINE B4 -185 107 12 1 1459 234 205 12 25 chr5 114565227 114565307 -37971952 + CT-rich Low_complexity Low_complexity 4 82 0 1 1459 337 189 125 54 chr5 114565317 114565429 -37971830 - PB1D7 SINE Alu 0 120 1 1 1459 1109 36 58 0 chr5 114565716 114565855 -37971404 + B1_Mus1 SINE Alu 2 148 0 1 1459 24 0 0 0 chr5 114565934 114565958 -37971301 + AT_rich Low_complexity Low_complexity 1 24 0 1 1459 457 340 41 0 chr5 114566316 114566513 -37970746 - B4A SINE B4 0 292 88 1 1459 458 309 14 14 chr5 114566508 114566646 -37970613 + RSINE1 SINE B4 18 155 -10 1 1459 336 64 0 0 chr5 114566650 114566697 -37970562 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1459 232 277 109 0 chr5 114566947 114567048 -37970211 + ID_B1 SINE B4 95 206 -18 1 1459 273 301 79 74 chr5 114567110 114567300 -37969959 - L1MEb LINE L1 -5520 550 360 1 1459 1142 55 7 27 chr5 114568850 114568999 -37968260 + B1_Mm SINE Alu 1 146 -1 1 1459 757 224 49 10 chr5 114569857 114570060 -37967199 - B3 SINE B2 0 216 6 1 1459 333 0 0 0 chr5 114570621 114570658 -37966601 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1459 331 202 11 56 chr5 114570713 114570802 -37966457 + RSINE1 SINE B4 52 136 -29 1 1459 333 198 43 32 chr5 114572312 114572406 -37964853 + ID_B1 SINE B4 76 170 -54 1 1459 474 200 20 10 chr5 114572322 114572423 -37964836 + PB1D7 SINE Alu 7 108 -12 1 1459 219 284 16 0 chr5 114573541 114573616 -37963643 - B1_Mur2 SINE Alu -56 93 18 1 1459 317 314 19 119 chr5 114573740 114573950 -37963309 + B3 SINE B2 28 216 0 1 1459 760 233 188 61 chr5 114574421 114574579 -37962680 + ORR1D1 LTR MaLR 1 160 -214 1 1459 288 0 0 0 chr5 114574579 114574611 -37962648 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 1 1459 760 233 188 61 chr5 114574611 114574781 -37962478 + ORR1D1 LTR MaLR 161 370 -4 1 1459 242 257 43 0 chr5 114575394 114575464 -37961795 - B3A SINE B2 -90 108 36 1 1459 307 252 12 14 chr5 114576011 114576092 -37961167 + B4A SINE B4 141 216 -76 1 1459 1621 152 129 67 chr5 114576416 114576789 -37960470 - RMER10B LTR ERVL 0 398 3 1 1459 737 253 89 0 chr5 114576841 114577031 -37960228 - B3 SINE B2 0 216 10 2 1459 1201 62 0 0 chr5 114577079 114577224 -37960035 + B1_Mus1 SINE Alu 4 148 0 2 1459 1360 82 16 5 chr5 114578638 114578822 -37958437 - B2_Mm2 SINE B2 -9 186 1 2 1459 1154 76 0 7 chr5 114578899 114579044 -37958215 - B1_Mus1 SINE Alu -4 144 1 2 1459 468 204 58 0 chr5 114579650 114579753 -37957506 - ID_B1 SINE B4 -26 198 90 2 1459 965 80 15 0 chr5 114579821 114579958 -37957301 + B1_Mus1 SINE Alu 10 148 0 2 1459 36 0 0 0 chr5 114579958 114579994 -37957265 + AT_rich Low_complexity Low_complexity 1 36 0 2 1459 326 143 0 45 chr5 114580118 114580184 -37957075 + tRNA-Ala-GCY_ tRNA tRNA 1 63 -12 2 1459 302 263 95 0 chr5 114581656 114581751 -37955508 - RSINE1 SINE B4 -33 132 29 2 1459 234 204 0 0 chr5 114582643 114582692 -37954567 + ID_B1 SINE B4 176 224 0 2 1459 447 149 46 230 chr5 114583178 114583352 -37953907 + B1_Mus1 SINE Alu 1 142 -6 2 1459 431 278 79 0 chr5 114583734 114583860 -37953399 - RSINE1 SINE B4 -19 146 11 2 1459 711 180 229 17 chr5 114583961 114584136 -37953123 - B3 SINE B2 -4 212 1 2 1459 360 186 302 57 chr5 114584163 114584319 -37952940 - B3 SINE B2 -4 194 3 2 1459 507 86 13 0 chr5 114585115 114585199 -37952060 + B1_Mm SINE Alu 27 147 0 2 1459 270 81 0 0 chr5 114586501 114586538 -37950721 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1459 427 352 41 0 chr5 114586540 114586685 -37950574 - B3A SINE B2 -38 160 10 2 1459 247 262 112 0 chr5 114587418 114587498 -37949761 + PB1D7 SINE Alu 12 100 -20 2 1459 441 0 0 0 chr5 114588756 114588805 -37948454 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1459 1049 155 31 1 chr5 114589672 114589879 -37947380 - RLTR11A LTR ERVK -30 497 287 2 1459 233 228 70 0 chr5 114589988 114590045 -37947214 - RLTR11A LTR ERVK -368 159 99 2 1459 361 128 4 0 chr5 114590178 114590245 -37947014 - B1_Mm SINE Alu -17 103 35 2 1459 741 164 69 46 chr5 114590234 114590407 -37946852 - MTC LTR MaLR -244 177 1 2 1459 446 295 91 17 chr5 114590417 114590593 -37946666 + B3A SINE B2 8 196 -2 2 1459 694 118 57 40 chr5 114590599 114590723 -37946536 + B1_Mus1 SINE Alu 2 127 -21 2 1459 285 315 102 68 chr5 114590860 114591037 -37946222 + B3A SINE B2 11 193 -5 2 1459 722 185 67 0 chr5 114591232 114591367 -37945892 + B1_Mur2 SINE Alu 5 148 -1 2 1459 597 178 129 72 chr5 114591372 114591511 -37945748 + B1_Mus2 SINE Alu 1 147 0 2 1459 1226 14 14 0 chr5 114591615 114591754 -37945505 + B1_Mus2 SINE Alu 1 141 -6 2 1459 189 0 0 0 chr5 114591758 114591779 -37945480 + (TAA)n Simple_repeat Simple_repeat 3 23 0 2 1459 380 275 32 21 chr5 114591779 114591872 -37945387 - PB1D7 SINE Alu -26 94 1 2 1459 1449 55 55 0 chr5 114592158 114592340 -37944919 - B2_Mm1t SINE B2 0 193 2 2 1459 4215 94 35 2 chr5 114592758 114593323 -37943936 + MT2B2 LTR ERVL 1 584 0 2 1459 396 59 0 0 chr5 114594052 114594103 -37943156 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1459 947 261 86 35 chr5 114594193 114594531 -37942728 - RLTR11A LTR ERVK -167 361 7 2 1459 243 79 0 0 chr5 114594710 114594748 -37942511 + (T)n Simple_repeat Simple_repeat 1 38 0 2 1459 525 212 62 22 chr5 114594750 114594893 -37942366 - B1F2 SINE Alu 0 149 3 2 1459 355 252 147 16 chr5 114594923 114595052 -37942207 + B1F SINE Alu 1 146 -3 2 1459 1325 103 11 0 chr5 114595075 114595259 -37942000 + B2_Mm2 SINE B2 1 186 -9 2 1459 216 0 0 0 chr5 114595467 114595491 -37941768 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 1459 1088 70 14 0 chr5 114595491 114595634 -37941625 - B1_Mus1 SINE Alu -3 145 1 2 1459 297 0 0 0 chr5 114596895 114596928 -37940331 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1459 320 261 24 0 chr5 114597180 114597275 -37939984 - B1F SINE Alu -2 147 47 2 1459 387 0 0 0 chr5 114597707 114597750 -37939509 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1459 303 242 181 8 chr5 114598147 114598251 -37939008 - L1M4b LINE L1 -4977 2357 2236 2 1459 1186 41 7 27 chr5 114598251 114598400 -37938859 - B1_Mus2 SINE Alu 0 147 2 2 1459 303 242 181 8 chr5 114598400 114598428 -37938831 - L1M4b LINE L1 -5099 2235 2202 2 1459 3952 120 64 65 chr5 114598468 114599223 -37938036 + RMER6A LTR ERVK 1 754 -2 2 1459 269 26 26 0 chr5 114600031 114600069 -37937190 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1459 270 179 36 0 chr5 114600300 114600356 -37936903 - B2_Mm2 SINE B2 -91 104 47 2 1459 219 186 0 0 chr5 114600363 114600370 -37936889 + (CCCCAG)n Simple_repeat Simple_repeat 3 9 0 2 1459 1326 106 0 6 chr5 114600370 114600551 -37936708 - B2_Mm2 SINE B2 -14 181 2 2 1459 219 186 0 0 chr5 114600551 114600613 -37936646 + (CCCCAG)n Simple_repeat Simple_repeat 4 65 0 2 1459 246 245 152 10 chr5 114600716 114600815 -37936444 + RSINE1 SINE B4 44 156 -9 2 1459 236 266 31 0 chr5 114601066 114601130 -37936129 - L1MC5 LINE L1 -1204 6757 6692 2 1459 501 229 84 0 chr5 114601446 114601577 -37935682 - ID_B1 SINE B4 -1 223 82 2 1459 669 237 7 7 chr5 114601625 114601761 -37935498 - RSINE1 SINE B4 -28 137 2 2 1459 189 0 0 0 chr5 114602950 114602971 -37934288 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1459 1160 82 0 0 chr5 114602971 114603118 -37934141 - B1_Mus2 SINE Alu 0 147 1 2 1459 311 297 0 78 chr5 114603398 114603526 -37933733 - PB1D7 SINE Alu -2 118 1 2 1459 652 257 24 82 chr5 114603693 114603901 -37933358 + B3A SINE B2 1 196 -2 2 1459 488 261 9 26 chr5 114603923 114604037 -37933222 + PB1D10 SINE Alu 1 112 -5 2 1459 529 234 94 0 chr5 114604093 114604221 -37933038 + B1_Mur1 SINE Alu 9 148 -1 2 1459 220 312 10 79 chr5 114604422 114604523 -37932736 - RSINE1 SINE B4 0 165 72 2 1459 323 289 65 24 chr5 114604600 114604724 -37932535 - MIRc SINE MIR -72 196 68 2 1459 289 295 34 43 chr5 114605849 114605966 -37931293 + BC1_Mm scRNA scRNA 7 122 -30 2 1459 21 0 0 0 chr5 114606439 114606460 -37930799 + AT_rich Low_complexity Low_complexity 1 21 0 2 1459 456 35 0 0 chr5 114606569 114606627 -37930632 + (GA)n Simple_repeat Simple_repeat 1 58 0 2 1459 463 187 0 12 chr5 114606634 114606730 -37930529 + PB1D9 SINE Alu 24 117 -3 2 1459 24 0 0 0 chr5 114607626 114607650 -37929609 + AT_rich Low_complexity Low_complexity 1 24 0 2 1459 1198 63 0 0 chr5 114607650 114607792 -37929467 - B1_Mus1 SINE Alu -6 142 1 2 1459 297 75 0 0 chr5 114608019 114608059 -37929200 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 2 1459 630 0 0 0 chr5 114608783 114608853 -37928406 + (TTTTC)n Simple_repeat Simple_repeat 5 74 0 2 1459 1239 36 0 0 chr5 114608855 114608995 -37928264 - B1_Mus1 SINE Alu -6 142 3 2 1459 762 239 65 0 chr5 114609020 114609204 -37928055 - B3 SINE B2 -20 196 1 2 1459 1457 82 0 15 chr5 114609368 114609565 -37927694 - B2_Mm2 SINE B2 0 195 2 2 1459 383 342 116 0 chr5 114609593 114609739 -37927520 - RSINE1 SINE B4 0 165 3 2 1459 1202 100 0 6 chr5 114610268 114610449 -37926810 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2 1459 1066 52 60 0 chr5 114610453 114610587 -37926672 - B1_Mus2 SINE Alu -5 142 1 2 1459 749 80 0 0 chr5 114610626 114610726 -37926533 - B2_Mm2 SINE B2 -94 101 2 2 1459 685 305 5 32 chr5 114610726 114610943 -37926316 - ID_B1 SINE B4 -12 212 2 2 1459 423 0 0 0 chr5 114611429 114611476 -37925783 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1459 246 273 0 18 chr5 114611995 114612051 -37925208 - RSINE1 SINE B4 -3 162 108 2 1459 251 263 91 25 chr5 114612060 114612181 -37925078 - RMER2 LTR ERV1 0 567 439 2 1459 816 205 43 0 chr5 114612234 114612486 -37924773 - RMER2 LTR ERV1 -207 360 1 2 1459 207 0 0 0 chr5 114612509 114612532 -37924727 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1459 267 240 79 13 chr5 114612665 114612741 -37924518 - B4 SINE B4 -208 84 4 2 1459 941 94 7 0 chr5 114612741 114612875 -37924384 - B2_Mm1t SINE B2 -53 140 6 2 1459 249 33 0 0 chr5 114612876 114612906 -37924353 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 2 1459 453 284 152 26 chr5 114613211 114613442 -37923817 - MER2 DNA MER2_type -16 329 70 2 1459 1182 164 45 0 chr5 114613771 114613972 -37923287 + B3 SINE B2 1 210 -6 2 1459 180 0 0 0 chr5 114614095 114614115 -37923144 + (CCCCCA)n Simple_repeat Simple_repeat 6 25 0 2 1459 373 231 49 59 chr5 114614210 114614350 -37922909 - L1MB7 LINE L1 -299 5875 5742 2 1459 1152 57 0 0 chr5 114614350 114614491 -37922768 + B1_Mus1 SINE Alu 2 142 -6 2 1459 298 245 55 85 chr5 114614491 114614515 -37922744 - L1MB7 LINE L1 -433 5741 5716 2 1459 533 143 0 39 chr5 114614524 114614626 -37922633 - PB1D9 SINE Alu 0 120 23 2 1459 894 136 219 6 chr5 114614770 114614948 -37922311 + B3 SINE B2 1 216 0 2 1459 503 175 146 0 chr5 114614986 114615089 -37922170 - B3 SINE B2 -98 118 1 2 1459 276 221 43 14 chr5 114616784 114616853 -37920406 - RSINE1 SINE B4 -2 163 93 2 1459 529 291 75 28 chr5 114616899 114617111 -37920148 - B4A SINE B4 -66 226 5 2 1459 699 75 0 0 chr5 114617111 114617205 -37920054 + (TTCC)n Simple_repeat Simple_repeat 1 94 0 2 1459 1194 107 0 0 chr5 114617214 114617391 -37919868 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 2 1459 371 323 0 0 chr5 114617397 114617497 -37919762 - ID_B1 SINE B4 -48 176 81 2 1459 1415 52 5 25 chr5 114617582 114617778 -37919481 + B2_Mm1t SINE B2 2 193 0 2 1459 1174 34 0 20 chr5 114617981 114618131 -37919128 + B1_Mus2 SINE Alu 1 147 0 3 1459 207 0 0 0 chr5 114618141 114618164 -37919095 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1459 434 279 37 44 chr5 114618178 114618313 -37918946 + B1F SINE Alu 1 134 -15 3 1459 222 361 0 0 chr5 114618319 114618402 -37918857 + GA-rich Low_complexity Low_complexity 4 86 0 3 1459 293 271 29 0 chr5 114618472 114618542 -37918717 + B3A SINE B2 4 75 -123 3 1459 538 98 0 12 chr5 114618644 114618727 -37918532 + B1_Mur4 SINE Alu 43 124 -26 3 1459 390 42 0 0 chr5 114618755 114618803 -37918456 + (CAA)n Simple_repeat Simple_repeat 2 49 0 3 1459 1749 234 52 86 chr5 114618827 114618894 -37918365 - RMER16 LTR ERVK -1 532 468 3 1459 1184 35 7 0 chr5 114618894 114619039 -37918220 + B1_Mus2 SINE Alu 2 147 0 3 1459 1357 34 97 0 chr5 114619042 114619218 -37918041 + B2_Mm1t SINE B2 1 193 0 3 1459 1749 234 52 86 chr5 114619218 114619679 -37917580 - RMER16 LTR ERVK -66 467 18 3 1459 226 31 0 0 chr5 114619680 114619712 -37917547 - B2_Mm1t SINE B2 -161 32 1 3 1459 273 235 120 93 chr5 114620003 114620111 -37917148 - MLT1A LTR MaLR 0 408 298 3 1459 364 264 17 126 chr5 114620130 114620365 -37916894 - MLT1A LTR MaLR -193 215 15 3 1459 393 102 0 0 chr5 114620798 114620857 -37916402 + (TCC)n Simple_repeat Simple_repeat 3 61 0 3 1459 781 149 0 41 chr5 114620873 114621020 -37916239 - B1_Mus1 SINE Alu -7 141 1 3 1459 453 243 6 28 chr5 114621509 114621691 -37915568 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 3 1459 279 225 23 12 chr5 114622164 114622335 -37914924 + (TG)n Simple_repeat Simple_repeat 2 174 0 3 1459 481 244 43 17 chr5 114622359 114622476 -37914783 - RSINE1 SINE B4 -1 164 45 3 1459 454 338 27 0 chr5 114622465 114622613 -37914646 - ID_B1 SINE B4 -57 167 16 3 1459 911 71 47 8 chr5 114622859 114622987 -37914272 + B1_Mus2 SINE Alu 2 134 -13 3 1459 252 0 0 0 chr5 114622987 114623015 -37914244 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 1459 252 256 10 104 chr5 114623089 114623185 -37914074 + MT2B2 LTR ERVL 152 238 -346 3 1459 485 176 33 11 chr5 114623114 114623206 -37914053 + PB1D10 SINE Alu 11 104 -13 3 1459 313 90 37 37 chr5 114623215 114623296 -37913963 + L1_Mus1 LINE L1 6487 6567 0 3 1459 1423 16 59 21 chr5 114623300 114623486 -37913773 + B2_Mm1a SINE B2 1 193 0 3 1459 1142 96 62 0 chr5 114623619 114623797 -37913462 - B2_Mm1t SINE B2 -4 189 1 3 1459 303 339 123 0 chr5 114623961 114624156 -37913103 - L1MC3 LINE L1 -297 7488 7270 3 1459 192 152 0 0 chr5 114624591 114624624 -37912635 + CT-rich Low_complexity Low_complexity 2 34 0 3 1459 1311 99 5 0 chr5 114625166 114625357 -37911902 - B2_Mm1a SINE B2 0 193 2 3 1459 244 158 35 0 chr5 114625410 114625467 -37911792 + (TAAA)n Simple_repeat Simple_repeat 3 61 0 3 1459 392 163 103 11 chr5 114626679 114626766 -37910493 + PB1D10 SINE Alu 5 99 -18 3 1459 886 131 66 33 chr5 114626947 114627129 -37910130 - B2_Mm2 SINE B2 -7 188 1 3 1459 225 154 0 0 chr5 114627129 114627168 -37910091 + T-rich Low_complexity Low_complexity 1 39 0 3 1459 509 262 41 53 chr5 114627199 114627368 -37909891 + MER58B DNA MER1_type 47 213 -128 3 1459 218 204 45 0 chr5 114627508 114627552 -37909707 - PB1D9 SINE Alu -70 50 5 3 1459 418 240 9 37 chr5 114627550 114627658 -37909601 - ID_B1 SINE B4 -21 203 99 3 1459 354 45 0 0 chr5 114627684 114627728 -37909531 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 1459 189 0 0 0 chr5 114627752 114627773 -37909486 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1459 391 316 154 25 chr5 114627848 114628088 -37909171 - MER58B DNA MER1_type -3 338 68 3 1459 323 284 0 51 chr5 114628212 114628290 -37908969 + RSINE1 SINE B4 63 136 -29 3 1459 283 202 0 23 chr5 114628391 114628477 -37908782 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 1459 620 221 107 6 chr5 114628479 114628647 -37908612 - B3A SINE B2 -13 185 1 3 1459 531 200 18 0 chr5 114629039 114629149 -37908110 - PB1D10 SINE Alu -1 116 5 3 1459 255 191 9 152 chr5 114629070 114629175 -37908084 - MT2B LTR ERVL -360 241 152 3 1459 245 357 41 0 chr5 114629420 114629518 -37907741 + MIRb SINE MIR 38 139 -129 3 1459 186 318 12 144 chr5 114630243 114630416 -37906843 - MIR SINE MIR -15 247 98 3 1459 553 327 66 56 chr5 114630532 114630613 -37906646 + B4A SINE B4 2 95 -197 3 1459 1118 61 0 0 chr5 114630613 114630760 -37906499 + B1_Mus1 SINE Alu 2 148 0 3 1459 553 316 58 41 chr5 114630760 114630978 -37906281 + B4A SINE B4 96 292 0 3 1459 227 224 98 76 chr5 114630903 114630995 -37906264 + B3 SINE B2 109 202 -14 3 1459 552 30 0 0 chr5 114631622 114631688 -37905571 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 3 1459 278 233 76 22 chr5 114631758 114631850 -37905409 + HAL1 LINE L1 1681 1777 -730 3 1459 270 175 12 24 chr5 114632228 114632310 -37904949 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1459 805 167 0 71 chr5 114632317 114632485 -37904774 - RSINE1 SINE B4 -2 163 8 3 1459 387 0 0 0 chr5 114632574 114632617 -37904642 + (TTC)n Simple_repeat Simple_repeat 3 45 0 3 1459 207 100 0 0 chr5 114632617 114632647 -37904612 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 1459 728 72 9 18 chr5 114632661 114632774 -37904485 - B1_Mus2 SINE Alu 0 147 36 3 1459 863 116 111 40 chr5 114632777 114632975 -37904284 - B3 SINE B2 0 216 5 3 1459 243 154 14 58 chr5 114633169 114633238 -37904021 + (TTGGGG)n Simple_repeat Simple_repeat 6 71 0 3 1459 1267 99 0 30 chr5 114633370 114633567 -37903692 - B2_Mm2 SINE B2 -4 191 1 3 1459 288 77 0 0 chr5 114633825 114633864 -37903395 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1459 297 228 0 25 chr5 114633881 114633962 -37903297 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 1459 1182 64 99 0 chr5 114634710 114634881 -37902378 - B2_Mm2 SINE B2 -7 188 1 3 1459 416 257 222 0 chr5 114634909 114635053 -37902206 - ID_B1 SINE B4 0 224 49 3 1459 3119 118 88 11 chr5 114635100 114635786 -37901473 - RLTR13D4 LTR ERVK 0 1033 2 3 1459 184 280 0 0 chr5 114636300 114636365 -37900894 + MIRm SINE MIR 113 170 -92 3 1459 1593 26 0 0 chr5 114636486 114636676 -37900583 - B2_Mm1a SINE B2 -2 191 2 3 1459 195 175 0 0 chr5 114636771 114636803 -37900456 + T-rich Low_complexity Low_complexity 9 40 0 3 1459 1568 31 5 0 chr5 114636803 114636995 -37900264 - B2_Mm1t SINE B2 0 193 1 3 1459 775 115 16 0 chr5 114637002 114637124 -37900135 - B1_Mur2 SINE Alu 0 149 26 3 1459 414 85 0 0 chr5 114637174 114637233 -37900026 + (TATG)n Simple_repeat Simple_repeat 2 60 0 3 1459 717 236 55 40 chr5 114637236 114637435 -37899824 - B3 SINE B2 -13 203 2 3 1459 1525 102 55 0 chr5 114637473 114637708 -37899551 - ORR1A3 LTR MaLR 0 326 79 3 1459 378 0 0 0 chr5 114637761 114637803 -37899456 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1459 336 64 0 0 chr5 114637901 114637948 -37899311 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1459 315 0 0 0 chr5 114638059 114638094 -37899165 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1459 497 161 0 0 chr5 114638099 114638180 -37899079 - B1_Mur3 SINE Alu -36 113 33 3 1459 990 69 0 0 chr5 114639495 114639626 -37897633 - B1_Mus1 SINE Alu 0 148 18 3 1459 516 227 63 63 chr5 114639641 114639815 -37897444 + ID_B1 SINE B4 42 215 -9 3 1459 200 167 0 0 chr5 114640759 114640789 -37896470 + (CGG)n Simple_repeat Simple_repeat 2 31 0 3 1459 305 289 61 10 chr5 114641380 114641478 -37895781 + PB1D7 SINE Alu 9 111 -9 3 1459 261 266 0 0 chr5 114641492 114641571 -37895688 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 1459 219 266 0 0 chr5 114641583 114641707 -37895552 + (CA)n Simple_repeat Simple_repeat 2 125 0 3 1459 219 103 0 0 chr5 114642334 114642373 -37894886 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1459 2521 144 170 14 chr5 114642380 114642886 -37894373 + RMER4B LTR ERVK 1 585 0 3 1459 229 291 120 65 chr5 114642892 114643076 -37894183 - B4A SINE B4 -50 242 49 3 1459 266 221 12 61 chr5 114643115 114643197 -37894062 - ID4_ SINE ID 0 83 6 3 1459 1870 103 9 51 chr5 114643679 114644083 -37893176 - ORR1A2 LTR MaLR 0 346 1 3 1459 371 181 160 0 chr5 114644088 114644182 -37893077 - B3 SINE B2 -8 208 100 3 1459 232 222 111 0 chr5 114644186 114644249 -37893010 + B1F2 SINE Alu 64 133 -16 3 1459 453 325 87 4 chr5 114644604 114644830 -37892429 - L1MA9 LINE L1 -20 6292 6056 3 1459 428 274 0 9 chr5 114644891 114644998 -37892261 - B1F SINE Alu -29 120 15 3 1459 553 229 124 7 chr5 114645870 114646015 -37891244 - RSINE1 SINE B4 -2 163 2 3 1459 266 289 43 22 chr5 114646349 114646441 -37890818 - PB1D10 SINE Alu -33 94 1 3 1459 315 0 0 0 chr5 114647296 114647331 -37889928 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 1459 1072 67 33 0 chr5 114647331 114647481 -37889778 - B2_Mm2 SINE B2 -39 156 2 3 1459 509 239 35 9 chr5 114647516 114647630 -37889629 - PB1D9 SINE Alu -3 117 1 3 1459 684 174 19 0 chr5 114647642 114647797 -37889462 + (TA)n Simple_repeat Simple_repeat 2 159 0 3 1459 866 289 5 0 chr5 114647804 114648012 -37889247 - B3 SINE B2 -2 214 6 3 1459 281 224 0 62 chr5 114648051 114648132 -37889127 - B4 SINE B4 -214 78 3 3 1459 338 224 13 39 chr5 114648481 114648634 -37888625 + (CA)n Simple_repeat Simple_repeat 1 149 0 3 1459 210 143 0 0 chr5 114648757 114648792 -37888467 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1459 360 0 0 0 chr5 114648839 114648879 -37888380 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1459 284 234 26 13 chr5 114650064 114650142 -37887117 - MIRc SINE MIR -104 164 86 3 1459 349 103 17 0 chr5 114650711 114650769 -37886490 - B1F2 SINE Alu -88 61 3 3 1459 333 191 32 0 chr5 114650769 114650784 -37886475 - ID_B1 SINE B4 -76 129 66 4 1459 269 48 0 45 chr5 114651198 114651242 -37886017 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4 1459 1247 31 0 6 chr5 114651242 114651403 -37885856 - B2_Mm1a SINE B2 -33 160 1 4 1459 704 72 10 0 chr5 114651440 114651537 -37885722 - B1_Mus1 SINE Alu -50 98 1 4 1459 477 209 8 73 chr5 114651537 114651564 -37885695 - MT2B LTR ERVL -349 252 137 4 1459 244 303 15 0 chr5 114651737 114651803 -37885456 - tRNA-Ala-GCY_ tRNA tRNA -7 68 2 4 1459 838 260 14 23 chr5 114652475 114652695 -37884564 - MLT1A0 LTR MaLR -8 357 140 4 1459 780 114 90 15 chr5 114652706 114652839 -37884420 + B1_Mur3 SINE Alu 1 143 -6 4 1459 251 253 13 13 chr5 114652861 114652937 -37884322 + (TATG)n Simple_repeat Simple_repeat 3 78 0 4 1459 556 252 80 0 chr5 114652937 114653088 -37884171 - RSINE1 SINE B4 -2 163 1 4 1459 729 181 30 0 chr5 114655016 114655149 -37882110 + B1_Mur4 SINE Alu 2 138 -12 4 1459 252 0 0 0 chr5 114655149 114655177 -37882082 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1459 524 241 6 0 chr5 114655272 114655430 -37881829 + (TA)n Simple_repeat Simple_repeat 1 159 0 4 1459 1808 72 58 7 chr5 114656063 114656341 -37880918 - ORR1A2 LTR MaLR -8 319 28 4 1459 424 184 10 0 chr5 114656367 114656465 -37880794 - ORR1A1 LTR MaLR -247 99 1 4 1459 229 324 0 0 chr5 114656894 114656965 -37880294 + ID4_ SINE ID 1 71 -12 4 1459 251 244 39 0 chr5 114657772 114657850 -37879409 - ID4_ SINE ID -1 82 2 4 1459 259 136 158 12 chr5 114658235 114658317 -37878942 - L1MC3 LINE L1 -118 7667 7574 4 1459 235 122 20 20 chr5 114658367 114658417 -37878842 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1459 265 170 0 0 chr5 114658502 114658549 -37878710 - B4A SINE B4 -164 128 82 4 1459 1129 35 0 40 chr5 114658569 114658720 -37878539 - B1_Mm SINE Alu -2 145 1 4 1459 415 230 122 35 chr5 114659035 114659221 -37878038 + B3A SINE B2 2 216 0 4 1459 394 281 41 16 chr5 114659241 114659364 -37877895 + B1F1 SINE Alu 1 126 -23 4 1459 328 190 215 49 chr5 114660140 114660284 -37876975 + B3 SINE B2 48 215 -1 4 1459 965 60 0 7 chr5 114660307 114660442 -37876817 + B1_Mus1 SINE Alu 14 147 -1 4 1459 388 103 206 0 chr5 114661636 114661704 -37875555 - ID4_ SINE ID -1 82 1 4 1459 417 216 256 0 chr5 114661711 114661887 -37875372 + L1MB7 LINE L1 5795 6015 -169 4 1459 243 0 0 0 chr5 114662027 114662054 -37875205 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1459 418 261 27 182 chr5 114662061 114662248 -37875011 + RSINE1 SINE B4 8 165 0 4 1459 258 220 0 0 chr5 114662248 114662307 -37874952 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1459 274 214 0 0 chr5 114663072 114663128 -37874131 - tRNA-Ala-GCY_ tRNA tRNA -18 57 2 4 1459 294 146 18 0 chr5 114663078 114663133 -37874126 - ID4 SINE ID -26 57 2 4 1459 249 245 0 19 chr5 114663791 114663845 -37873414 + C-rich Low_complexity Low_complexity 3 55 0 4 1459 229 279 16 0 chr5 114663863 114663924 -37873335 - ID4 SINE ID -19 64 3 4 1459 271 287 11 11 chr5 114663932 114664020 -37873239 - MER58B DNA MER1_type -12 329 242 4 1459 274 305 47 9 chr5 114664187 114664293 -37872966 - PB1 SINE Alu -3 124 15 4 1459 1444 246 18 0 chr5 114664375 114664713 -37872546 - MTEa LTR MaLR -25 354 11 4 1459 711 266 32 16 chr5 114664948 114665135 -37872124 - B3A SINE B2 -8 190 1 4 1459 779 293 31 55 chr5 114665614 114665903 -37871356 + B4A SINE B4 9 290 -2 4 1459 250 138 309 12 chr5 114666052 114666133 -37871126 - PB1D7 SINE Alu -13 107 3 4 1459 1291 71 50 0 chr5 114666202 114666384 -37870875 + B2_Mm2 SINE B2 2 192 -3 4 1459 205 346 0 0 chr5 114666406 114666487 -37870772 + C-rich Low_complexity Low_complexity 1 81 0 4 1459 447 68 0 0 chr5 114666487 114666546 -37870713 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1459 984 114 0 0 chr5 114667124 114667273 -37869986 + (TTTC)n Simple_repeat Simple_repeat 2 150 0 4 1459 297 270 86 28 chr5 114667812 114667960 -37869299 - MIRc SINE MIR -93 175 18 4 1459 1112 74 0 57 chr5 114668496 114668653 -37868606 - B1_Mus1 SINE Alu 0 148 1 4 1459 771 239 25 0 chr5 114669239 114669398 -37867861 + RSINE1 SINE B4 3 165 0 4 1459 219 170 0 0 chr5 114669400 114669447 -37867812 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1459 3947 115 132 32 chr5 114669727 114670411 -37866848 - RMER6A LTR ERVK -4 752 1 4 1459 288 222 14 27 chr5 114670954 114671102 -37866157 + (TG)n Simple_repeat Simple_repeat 1 146 0 4 1459 296 309 5 53 chr5 114671154 114671342 -37865917 + (TG)n Simple_repeat Simple_repeat 1 179 0 4 1459 450 240 13 39 chr5 114671381 114671537 -37865722 + (TG)n Simple_repeat Simple_repeat 1 152 0 4 1459 471 264 7 41 chr5 114671543 114671689 -37865570 - RSINE1 SINE B4 -1 164 24 4 1459 270 0 0 0 chr5 114671984 114672014 -37865245 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1459 296 266 0 102 chr5 114672146 114672234 -37865025 - MTEb LTR MaLR -299 80 2 4 1459 219 69 0 0 chr5 114672972 114673001 -37864258 + (CTCA)n Simple_repeat Simple_repeat 3 31 0 4 1459 1430 56 67 0 chr5 114673486 114673665 -37863594 + B2_Mm2 SINE B2 2 192 -3 4 1459 541 198 0 21 chr5 114674216 114674372 -37862887 + B3 SINE B2 2 210 -6 4 1459 399 0 0 0 chr5 114674404 114674451 -37862808 - ORR1A2 LTR MaLR -8 318 272 4 1459 1856 86 12 71 chr5 114674484 114674505 -37862754 - ORR1A2 LTR MaLR -22 305 286 4 1459 1331 101 11 5 chr5 114674505 114674694 -37862565 - B2_Mm1t SINE B2 -3 190 1 4 1459 1856 86 12 71 chr5 114674694 114674996 -37862263 - ORR1A2 LTR MaLR -42 285 1 4 1459 372 272 0 0 chr5 114675196 114675277 -37861982 + ID4 SINE ID 3 83 0 4 1459 292 305 67 0 chr5 114675459 114675564 -37861695 - L1MB7 LINE L1 -284 5900 5789 4 1459 229 329 12 0 chr5 114676338 114676423 -37860836 - Tigger12c DNA MER2_type -388 346 261 4 1459 302 286 169 39 chr5 114677202 114677409 -37859850 + B4A SINE B4 1 234 -58 4 1459 345 207 25 90 chr5 114677417 114677539 -37859720 + B3A SINE B2 85 198 0 4 1459 970 76 6 142 chr5 114677712 114677881 -37859378 + B1_Mus2 SINE Alu 1 146 -1 4 1459 185 0 40 0 chr5 114678175 114678200 -37859059 + (TATG)n Simple_repeat Simple_repeat 2 27 0 4 1459 490 254 35 0 chr5 114678237 114678351 -37858908 - RSINE1 SINE B4 -24 141 24 4 1459 1956 103 6 46 chr5 114678804 114679193 -37858066 - ORR1A2 LTR MaLR 0 346 2 4 1459 333 231 0 0 chr5 114679556 114679621 -37857638 + ID4 SINE ID 5 69 -14 4 1459 427 157 0 0 chr5 114680627 114680697 -37856562 - B3 SINE B2 -146 70 1 4 1459 383 222 387 23 chr5 114681210 114681424 -37855835 - B4A SINE B4 0 292 1 4 1459 553 271 25 0 chr5 114681742 114681864 -37855395 + PB1 SINE Alu 3 127 0 4 1459 1343 173 0 26 chr5 114681892 114682124 -37855135 + URR1A DNA MER1_type 1 226 0 4 1459 513 239 92 58 chr5 114682256 114682429 -37854830 - B3 SINE B2 -27 189 11 4 1459 667 263 14 66 chr5 114682467 114682679 -37854580 + B4A SINE B4 3 203 -89 4 1459 180 0 0 0 chr5 114682716 114682736 -37854523 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 4 1459 331 255 61 0 chr5 114683788 114683886 -37853373 + PB1D10 SINE Alu 1 104 -13 4 1459 408 40 0 0 chr5 114683890 114683940 -37853319 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1459 190 307 0 11 chr5 114684160 114684338 -37852921 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 1459 207 0 0 0 chr5 114684402 114684425 -37852834 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1459 27 29 0 0 chr5 114684637 114684671 -37852588 + AT_rich Low_complexity Low_complexity 1 34 0 4 1459 411 306 18 42 chr5 114684895 114685062 -37852197 - URR1B DNA MER1_type -2 223 61 4 1459 213 121 0 0 chr5 114685679 114685712 -37851547 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 4 1459 548 189 14 14 chr5 114685847 114685992 -37851267 + CT-rich Low_complexity Low_complexity 4 148 0 4 1459 965 166 0 7 chr5 114686035 114686181 -37851078 - B1_Mus1 SINE Alu -1 147 3 4 1459 660 301 31 40 chr5 114686708 114686936 -37850323 - B4A SINE B4 -19 273 48 4 1459 1519 62 5 5 chr5 114687636 114687829 -37849430 - B2_Mm1a SINE B2 0 193 1 4 1459 216 0 0 0 chr5 114687934 114687958 -37849301 + (T)n Simple_repeat Simple_repeat 1 24 0 4 182 1212 61 0 0 chr5 114687958 114688106 -37849153 - B1_Mus1 SINE Alu 0 148 1 4 1460 277 220 138 32 chr5 114688492 114688586 -37848673 + ID_B1 SINE B4 92 195 -29 4 1460 261 230 19 171 chr5 114688586 114688597 -37848662 + PB1D9 SINE Alu 11 99 -21 4 1460 1607 161 55 9 chr5 114688799 114689124 -37848135 - ORR1B2 LTR MaLR 0 367 28 4 1460 396 327 47 41 chr5 114689486 114689655 -37847604 - MER5B DNA MER1_type -3 175 6 4 1460 229 328 68 30 chr5 114690009 114690141 -37847118 + MIRb SINE MIR 13 149 -119 4 1460 208 150 0 24 chr5 114691772 114691813 -37845446 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1460 598 295 126 11 chr5 114692157 114692418 -37844841 + B4A SINE B4 2 292 0 4 1460 293 267 0 9 chr5 114692496 114692602 -37844657 + (CA)n Simple_repeat Simple_repeat 2 106 0 4 1460 750 223 99 17 chr5 114692707 114692940 -37844319 + Lx9 LINE L1 7391 7642 -2 4 1460 252 0 0 0 chr5 114693533 114693561 -37843698 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1460 246 236 12 143 chr5 114693822 114693906 -37843353 - ID4 SINE ID -3 80 8 4 1460 484 250 9 9 chr5 114693924 114694033 -37843226 - PB1D10 SINE Alu -8 109 1 4 1460 818 123 31 10 chr5 114694934 114695072 -37842187 - MTC LTR MaLR 0 421 190 5 1460 478 259 148 45 chr5 114696122 114696324 -37840935 + B4A SINE B4 68 290 -2 5 1460 401 174 0 16 chr5 114697396 114697519 -37839740 + (TCTCTG)n Simple_repeat Simple_repeat 2 122 0 5 1460 320 239 0 0 chr5 114697522 114697614 -37839645 + (TG)n Simple_repeat Simple_repeat 2 93 0 5 1460 938 190 13 6 chr5 114697621 114697780 -37839479 - RSINE1 SINE B4 -4 161 2 5 1460 252 302 78 19 chr5 114700870 114701044 -37836215 - MIRb SINE MIR -19 189 13 5 1460 227 246 16 16 chr5 114701305 114701367 -37835892 + MLT1K LTR MaLR 425 486 -109 5 1460 268 285 242 19 chr5 114701417 114701578 -37835681 - Lx8 LINE L1 -220 7253 7057 5 1460 352 348 6 22 chr5 114701647 114701829 -37835430 + (CA)n Simple_repeat Simple_repeat 1 179 0 5 1460 1874 259 94 57 chr5 114701857 114702528 -37834731 - Lx8 LINE L1 -486 6987 6292 5 1460 411 297 76 44 chr5 114702521 114702771 -37834488 - L1MB1 LINE L1 -350 5839 5582 5 1460 3595 25 0 0 chr5 114703109 114703505 -37833754 + MTA_Mm LTR MaLR 1 396 0 5 1460 558 40 0 0 chr5 114703505 114703581 -37833678 + MTA_Mm-int LTR MaLR 1 76 -1022 5 1460 333 0 0 0 chr5 114703894 114703931 -37833328 + (CA)n Simple_repeat Simple_repeat 1 37 0 5 1460 233 258 175 4 chr5 114705863 114705983 -37831276 + MIRm SINE MIR 31 166 -102 5 1460 230 240 25 51 chr5 114706295 114706374 -37830885 + MIRm SINE MIR 77 153 -123 5 1460 208 198 46 69 chr5 114706686 114706773 -37830486 + (CTGGGG)n Simple_repeat Simple_repeat 3 87 0 5 1460 198 0 0 0 chr5 114707343 114707365 -37829894 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1460 792 211 0 0 chr5 114707455 114707695 -37829564 + (TG)n Simple_repeat Simple_repeat 1 240 0 5 1460 633 215 6 22 chr5 114707695 114707876 -37829383 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 5 1460 188 238 16 0 chr5 114707866 114707929 -37829330 + (TG)n Simple_repeat Simple_repeat 1 64 0 5 1460 495 48 0 0 chr5 114709049 114709111 -37828148 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 5 1460 1583 28 0 6 chr5 114709111 114709292 -37827967 - B2_Mm2 SINE B2 -13 182 3 5 1460 1515 53 21 0 chr5 114710638 114710825 -37826434 + B2_Mm2 SINE B2 1 191 -4 5 1460 292 232 36 24 chr5 114711667 114711751 -37825508 - MER117 DNA MER1_type 0 197 113 5 1460 518 328 11 11 chr5 114711969 114712151 -37825108 + MER58A DNA MER1_type 4 185 -39 5 1460 525 132 0 21 chr5 114712167 114712260 -37824999 + PB1D10 SINE Alu 23 113 -4 5 1460 1249 28 0 0 chr5 114712261 114712402 -37824857 + B1_Mus1 SINE Alu 1 141 -7 5 1460 335 23 23 0 chr5 114712405 114712449 -37824810 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 5 1460 342 285 217 17 chr5 114712656 114712831 -37824428 - MER58C DNA MER1_type 0 215 6 5 1460 221 327 35 19 chr5 114713369 114713499 -37823760 - MIRb SINE MIR -71 197 63 5 1460 450 0 0 0 chr5 114713588 114713638 -37823621 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1460 205 245 94 0 chr5 114714563 114714616 -37822643 - MIRb SINE MIR -92 176 119 5 1460 298 280 40 0 chr5 114715740 114715840 -37821419 + MIRc SINE MIR 52 155 -113 5 1460 206 256 0 0 chr5 114716463 114716506 -37820753 + L2b LINE L2 3312 3354 -21 5 1460 298 269 55 20 chr5 114717001 114717156 -37820103 + MIRc SINE MIR 35 200 -68 5 1460 1071 58 64 7 chr5 114717941 114718081 -37819178 + B1_Mus1 SINE Alu 1 148 0 5 1460 333 278 14 35 chr5 114718576 114718715 -37818544 + MIR SINE MIR 40 185 -83 5 1460 333 0 0 0 chr5 114719172 114719209 -37818050 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1460 396 0 0 0 chr5 114719517 114719561 -37817698 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1460 201 324 144 33 chr5 114719839 114719992 -37817267 + MIRm SINE MIR 99 268 -8 5 1460 21 36 0 0 chr5 114721345 114721373 -37815886 + AT_rich Low_complexity Low_complexity 1 28 0 5 1460 630 239 7 34 chr5 114721401 114721548 -37815711 - RSINE1 SINE B4 -18 147 5 5 1460 214 219 0 0 chr5 114721730 114721771 -37815488 - MIRc SINE MIR -115 153 113 5 1460 288 247 30 40 chr5 114722550 114722651 -37814608 - MIR3 SINE MIR -31 177 78 5 1460 24 0 0 0 chr5 114723196 114723220 -37814039 + GC_rich Low_complexity Low_complexity 1 24 0 5 1460 423 255 0 21 chr5 114727953 114728049 -37809210 - RSINE1 SINE B4 -69 96 3 5 1460 306 0 0 0 chr5 114728139 114728173 -37809086 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1460 213 114 29 0 chr5 114728492 114728527 -37808732 + (GGGTG)n Simple_repeat Simple_repeat 3 38 0 5 1460 989 149 164 5 chr5 114728829 114729024 -37808235 + URR1A DNA MER1_type 1 226 0 5 1460 243 172 0 0 chr5 114730250 114730266 -37806993 + A-rich Low_complexity Low_complexity 1 16 0 5 1460 948 45 105 0 chr5 114730266 114730399 -37806860 + B1_Mus2 SINE Alu 1 147 0 5 1460 243 172 0 0 chr5 114730399 114730446 -37806813 + A-rich Low_complexity Low_complexity 17 63 0 5 1460 738 193 0 0 chr5 114730520 114730696 -37806563 + (TGGA)n Simple_repeat Simple_repeat 4 179 0 5 1460 201 264 0 0 chr5 114730695 114730767 -37806492 + (TAGG)n Simple_repeat Simple_repeat 3 74 0 5 1460 239 207 33 33 chr5 114730792 114730852 -37806407 - ID4_ SINE ID -12 71 12 5 1460 598 231 156 0 chr5 114731048 114731234 -37806025 + ID_B1 SINE B4 1 215 -9 5 1460 908 222 125 18 chr5 114731252 114731532 -37805727 - Lx8 LINE L1 -466 7007 6698 5 1460 819 192 26 113 chr5 114732005 114732234 -37805025 - B3 SINE B2 -7 209 1 5 1460 482 260 43 60 chr5 114732237 114732421 -37804838 - RLTR42-int LTR ERVK -4106 1416 1236 5 1460 712 48 19 0 chr5 114732660 114732765 -37804494 + (CA)n Simple_repeat Simple_repeat 1 107 0 5 1460 22 35 0 0 chr5 114732920 114732949 -37804310 + AT_rich Low_complexity Low_complexity 1 29 0 5 1460 301 278 10 49 chr5 114732949 114733051 -37804208 + (TG)n Simple_repeat Simple_repeat 1 98 0 5 1460 494 238 111 0 chr5 114733064 114733190 -37804069 - RSINE1 SINE B4 -1 164 25 5 1460 256 287 15 4 chr5 114733198 114733291 -37803968 - PB1D10 SINE Alu -55 94 1 5 1460 214 382 10 10 chr5 114733199 114733302 -37803957 - ID_B1 SINE B4 -51 173 71 5 1460 445 241 0 0 chr5 114733565 114733652 -37803607 + PB1D7 SINE Alu 26 112 -8 5 1460 496 309 51 21 chr5 114733823 114734087 -37803172 + L1MA8 LINE L1 5643 5929 -362 5 1460 298 258 0 0 chr5 114734270 114734332 -37802927 + PB1D10 SINE Alu 28 89 -28 5 1460 495 0 0 0 chr5 114734584 114734639 -37802620 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1460 306 250 82 10 chr5 114735549 114735646 -37801613 - PB1D10 SINE Alu -2 115 12 5 1460 2692 40 3 6 chr5 114735680 114736027 -37801232 + L1_Mus1 LINE L1 6222 6567 0 5 1460 695 209 102 3 chr5 114736200 114736381 -37800878 - B3 SINE B2 0 216 18 5 1460 256 363 33 29 chr5 114736809 114737053 -37800206 - L1MA6 LINE L1 -123 6177 5933 5 1460 443 319 151 0 chr5 114737516 114737701 -37799558 - B4 SINE B4 0 292 80 5 1460 1193 247 84 35 chr5 114738211 114738580 -37798679 + MTD LTR MaLR 18 404 -15 5 1460 189 264 0 0 chr5 114740429 114740539 -37796720 + (TG)n Simple_repeat Simple_repeat 1 110 0 5 1460 275 252 8 13 chr5 114740552 114740795 -37796464 + (TG)n Simple_repeat Simple_repeat 1 241 0 5 1460 602 170 12 12 chr5 114740807 114740980 -37796279 + (TG)n Simple_repeat Simple_repeat 1 173 0 5 1460 250 240 143 36 chr5 114741014 114741171 -37796088 - B4 SINE B4 -118 174 3 5 1460 209 140 18 0 chr5 114742558 114742615 -37794644 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1460 463 291 39 45 chr5 114742626 114742781 -37794478 - RSINE1 SINE B4 0 165 12 5 1460 259 109 0 21 chr5 114743172 114743219 -37794040 - RSINE1 SINE B4 -117 48 3 5 1460 1140 61 0 0 chr5 114743849 114743996 -37793263 + B1_Mus1 SINE Alu 1 147 -1 5 1460 551 259 55 37 chr5 114744455 114744619 -37792640 + B4A SINE B4 1 167 -125 5 1460 1184 48 0 0 chr5 114744767 114744914 -37792345 + B1_Mm SINE Alu 1 147 0 5 1460 189 0 0 0 chr5 114744914 114744935 -37792324 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1460 594 93 180 36 chr5 114744996 114745107 -37792152 - B2_Mm2 SINE B2 -65 130 4 5 1460 482 245 84 88 chr5 114745224 114745439 -37791820 + B4A SINE B4 2 215 -77 5 1460 366 23 0 0 chr5 114745681 114745724 -37791535 + (TGG)n Simple_repeat Simple_repeat 1 43 0 5 1460 1048 76 0 0 chr5 114745724 114745863 -37791396 - B1_Mus1 SINE Alu -2 146 8 5 1460 451 270 85 16 chr5 114746066 114746254 -37791005 - L1MA4 LINE L1 -279 6021 5821 5 1460 195 129 0 0 chr5 114746304 114746335 -37790924 + (TGG)n Simple_repeat Simple_repeat 2 32 0 5 1460 462 272 115 3 chr5 114746720 114746899 -37790360 - B3A SINE B2 -7 188 1 5 1460 227 147 179 39 chr5 114747369 114747447 -37789812 - PB1D10 SINE Alu -28 89 1 5 1460 378 235 26 12 chr5 114747706 114748279 -37788980 + (CA)n Simple_repeat Simple_repeat 1 580 0 5 1460 231 235 8 16 chr5 114748313 114748434 -37788825 + (CA)n Simple_repeat Simple_repeat 1 120 0 5 1460 285 320 151 0 chr5 114748450 114748622 -37788637 - Cheshire DNA MER1_type -2220 200 3 5 1460 681 169 8 8 chr5 114748817 114748942 -37788317 - RSINE1 SINE B4 0 165 41 5 1460 279 0 0 0 chr5 114748970 114749001 -37788258 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1460 549 55 0 0 chr5 114749064 114749137 -37788122 + (TC)n Simple_repeat Simple_repeat 2 74 0 5 1460 513 194 0 16 chr5 114751355 114751538 -37785721 + CT-rich Low_complexity Low_complexity 1 180 0 5 1460 488 90 5 13 chr5 114751624 114751711 -37785548 + PB1D10 SINE Alu 20 108 -41 5 1460 272 217 47 24 chr5 114751642 114751727 -37785532 + MT2B LTR ERVL 194 280 -321 5 1460 263 236 20 128 chr5 114751731 114751806 -37785453 + B4A SINE B4 157 222 -70 5 1460 442 259 49 27 chr5 114751806 114751989 -37785270 + B2_Mm2 SINE B2 4 190 -5 6 1460 263 236 20 128 chr5 114751989 114752015 -37785244 + B4A SINE B4 223 247 -45 5 1460 289 310 26 26 chr5 114752324 114752440 -37784819 - PB1D7 SINE Alu -3 117 2 6 1460 619 195 154 0 chr5 114752476 114752625 -37784634 + B3A SINE B2 1 172 -26 6 1460 495 81 23 11 chr5 114752898 114752985 -37784274 + (TCCC)n Simple_repeat Simple_repeat 3 90 0 6 1460 495 0 0 0 chr5 114752985 114753040 -37784219 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 6 1460 297 229 70 14 chr5 114753040 114753111 -37784148 - PB1D10 SINE Alu -16 101 27 6 1460 252 164 45 0 chr5 114753126 114753193 -37784066 + CT-rich Low_complexity Low_complexity 1 70 0 6 1460 866 148 0 14 chr5 114753193 114753337 -37783922 - B1_Mus2 SINE Alu -5 142 1 6 1460 656 295 0 0 chr5 114753370 114753519 -37783740 + RSINE1 SINE B4 17 165 0 6 1460 360 0 0 0 chr5 114753799 114753839 -37783420 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1460 444 209 17 0 chr5 114754432 114754609 -37782650 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1460 202 194 28 0 chr5 114754643 114754715 -37782544 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1460 282 168 39 39 chr5 114754790 114754970 -37782289 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1460 198 0 0 0 chr5 114755048 114755070 -37782189 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1460 654 237 20 0 chr5 114755070 114755222 -37782037 - B4A SINE B4 0 292 138 6 1460 251 298 64 0 chr5 114755276 114755370 -37781889 - L1MB5 LINE L1 -59 6115 6016 6 1460 253 275 36 36 chr5 114755541 114755624 -37781635 + B4 SINE B4 45 127 -165 6 1460 1426 190 84 19 chr5 114755950 114756309 -37780950 - RLTR14 LTR ERV1 0 382 1 6 1460 691 247 55 6 chr5 114756334 114756517 -37780742 + B3A SINE B2 1 192 -6 6 1460 540 0 0 0 chr5 114756853 114756913 -37780346 + (GGA)n Simple_repeat Simple_repeat 2 61 0 6 1460 369 250 32 57 chr5 114757004 114757127 -37780132 + RSINE1 SINE B4 3 122 -43 6 1460 477 0 0 0 chr5 114757145 114757198 -37780061 + (CTG)n Simple_repeat Simple_repeat 1 53 0 6 1460 1165 191 5 5 chr5 114757354 114757570 -37779689 + B3 SINE B2 1 216 0 6 1460 256 266 62 25 chr5 114757602 114757683 -37779576 + PB1D7 SINE Alu 24 107 -13 6 1460 948 126 0 0 chr5 114757684 114757835 -37779424 + (GA)n Simple_repeat Simple_repeat 2 152 0 6 1460 1171 54 0 0 chr5 114758032 114758179 -37779080 - B1_Mus2 SINE Alu 0 147 1 6 1460 185 47 0 85 chr5 114758501 114758548 -37778711 + (TCTCCC)n Simple_repeat Simple_repeat 5 47 0 6 1460 840 210 65 20 chr5 114758553 114758752 -37778507 - B3 SINE B2 -5 211 4 6 1460 453 123 24 12 chr5 114759050 114759132 -37778127 + B3A SINE B2 1 83 -115 6 1460 779 308 86 48 chr5 114759491 114759945 -37777314 - L1ME2 LINE L1 -116 6048 5578 6 1460 240 274 119 13 chr5 114760006 114760165 -37777094 - L1ME2 LINE L1 -994 5450 5275 6 1460 605 203 17 0 chr5 114760390 114760508 -37776751 + B1_Mur4 SINE Alu 10 129 -21 6 1460 340 231 15 0 chr5 114760629 114760759 -37776500 + (TG)n Simple_repeat Simple_repeat 1 132 0 6 1460 587 222 0 7 chr5 114760779 114761074 -37776185 + (TG)n Simple_repeat Simple_repeat 1 292 0 6 1460 186 43 0 0 chr5 114762366 114762389 -37774870 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1460 197 0 0 67 chr5 114762386 114762407 -37774852 + (GTTTG)n Simple_repeat Simple_repeat 5 24 0 6 1460 306 0 0 0 chr5 114762407 114762441 -37774818 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 6 1460 197 0 0 67 chr5 114762441 114762449 -37774810 + (GTTTG)n Simple_repeat Simple_repeat 2 9 0 6 1460 998 59 22 0 chr5 114762460 114762596 -37774663 - B1_Mus2 SINE Alu -2 145 7 6 1460 793 261 175 48 chr5 114762910 114763264 -37773995 + MTD LTR MaLR 2 400 -19 6 1460 240 59 0 0 chr5 114763376 114763410 -37773849 + (T)n Simple_repeat Simple_repeat 1 34 0 6 1460 725 299 60 64 chr5 114763427 114763709 -37773550 - B4 SINE B4 -4 288 8 6 1460 316 188 37 24 chr5 114763898 114763980 -37773279 + (CA)n Simple_repeat Simple_repeat 2 84 0 6 1460 474 203 11 28 chr5 114763981 114764163 -37773096 + (CATA)n Simple_repeat Simple_repeat 2 180 0 6 1460 509 213 12 12 chr5 114764200 114764371 -37772888 + (CATATA)n Simple_repeat Simple_repeat 4 174 0 6 1460 220 164 16 32 chr5 114764390 114764453 -37772806 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 6 1460 40 79 0 0 chr5 114765746 114765835 -37771424 + AT_rich Low_complexity Low_complexity 1 89 0 6 1460 560 111 11 0 chr5 114765844 114765934 -37771325 + (TA)n Simple_repeat Simple_repeat 1 91 0 6 1460 1126 82 0 0 chr5 114766006 114766152 -37771107 - B1_Mus1 SINE Alu -1 147 2 6 1460 207 0 0 0 chr5 114766164 114766187 -37771072 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 6 1460 1272 112 0 0 chr5 114766193 114766371 -37770888 - B2_Mm1a SINE B2 -14 179 2 6 1460 24 0 0 0 chr5 114766373 114766397 -37770862 + AT_rich Low_complexity Low_complexity 1 24 0 6 1460 201 259 51 17 chr5 114767256 114767315 -37769944 + L2c LINE L2 3093 3153 -234 6 1460 1185 106 0 0 chr5 114767890 114768070 -37769189 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 6 1460 707 235 209 46 chr5 114768908 114769234 -37768025 - MTE2b LTR MaLR 0 379 1 6 1460 1250 81 11 16 chr5 114769268 114769457 -37767802 + B2_Mm1t SINE B2 6 193 0 6 1460 202 306 58 48 chr5 114770196 114770299 -37766960 + MIRm SINE MIR 41 144 -132 6 1460 255 79 0 0 chr5 114770850 114770888 -37766371 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1460 273 287 150 62 chr5 114770943 114771103 -37766156 - B4 SINE B4 -19 273 100 6 1460 1068 82 0 7 chr5 114771274 114771422 -37765837 + B1_Mus1 SINE Alu 2 148 0 6 1460 657 96 0 0 chr5 114771422 114771516 -37765743 + (GAAA)n Simple_repeat Simple_repeat 3 96 0 6 1460 351 174 139 0 chr5 114771580 114771666 -37765593 + B1F1 SINE Alu 3 100 -49 6 1460 501 274 22 7 chr5 114771652 114771788 -37765471 + RSINE1 SINE B4 16 153 -12 6 1460 473 183 0 0 chr5 114771942 114772024 -37765235 - B1F SINE Alu -29 120 39 6 1460 509 242 0 45 chr5 114772250 114772384 -37764875 + RSINE1 SINE B4 2 129 -36 6 1460 22 35 0 0 chr5 114772442 114772471 -37764788 + AT_rich Low_complexity Low_complexity 1 29 0 6 1460 310 85 68 0 chr5 114772502 114772561 -37764698 + B2_Mm2 SINE B2 126 188 -7 6 1460 358 268 26 12 chr5 114773050 114773161 -37764098 + PB1D10 SINE Alu 2 114 -35 6 1460 316 365 10 0 chr5 114773072 114773176 -37764083 + ID_B1 SINE B4 103 207 -17 6 1460 269 64 43 0 chr5 114774116 114774163 -37763096 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 6 1460 468 223 0 0 chr5 114774457 114774632 -37762627 + (CA)n Simple_repeat Simple_repeat 2 176 0 6 1460 513 283 0 0 chr5 114774737 114774917 -37762342 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1460 553 253 94 20 chr5 114775214 114775363 -37761896 - MER2 DNA MER2_type -23 322 163 6 1460 547 260 16 12 chr5 114775378 114775604 -37761655 + B4A SINE B4 2 263 -29 6 1460 292 241 111 77 chr5 114775639 114775756 -37761503 - MER2 DNA MER2_type -203 142 22 6 1460 522 284 6 36 chr5 114775937 114776105 -37761154 + RSINE1 SINE B4 3 165 0 6 1460 1361 78 15 15 chr5 114776432 114776627 -37760632 + B2_Mm2 SINE B2 1 195 0 6 1460 629 228 0 0 chr5 114777108 114777231 -37760028 + B3A SINE B2 1 123 -75 6 1460 908 195 9 33 chr5 114777272 114777484 -37759775 - B3 SINE B2 -7 209 3 6 1460 313 219 199 32 chr5 114777503 114777659 -37759600 + B4 SINE B4 110 291 -1 6 1460 520 136 37 37 chr5 114778219 114778326 -37758933 - PB1D9 SINE Alu -1 119 13 6 1460 716 203 0 0 chr5 114778338 114778466 -37758793 - B1_Mur4 SINE Alu -22 128 1 6 1460 411 191 0 118 chr5 114778361 114778480 -37758779 - MT2B LTR ERVL -344 257 153 6 1460 238 337 137 0 chr5 114778973 114779068 -37758191 - PB1D10 SINE Alu -8 109 2 6 1460 447 203 5 92 chr5 114779589 114779784 -37757475 + C-rich Low_complexity Low_complexity 3 180 0 6 1460 228 304 101 0 chr5 114780339 114780408 -37756851 + L2c LINE L2 3282 3357 -30 6 1460 3366 43 2 8 chr5 114780486 114780884 -37756375 - MTA_Mm LTR MaLR 0 396 1 6 1460 996 152 220 0 chr5 114781115 114781292 -37755967 + B3 SINE B2 1 216 0 6 1460 718 235 16 68 chr5 114781334 114781487 -37755772 + B3A SINE B2 11 154 -44 6 1460 234 0 0 0 chr5 114781487 114781513 -37755746 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1460 718 235 16 68 chr5 114781513 114781551 -37755708 + B3A SINE B2 155 192 -6 6 1460 272 316 0 25 chr5 114781583 114781664 -37755595 - MLT1A0 LTR MaLR -17 348 270 6 1460 234 211 110 73 chr5 114781775 114781857 -37755402 - MLT1A0 LTR MaLR -288 102 18 6 1460 701 268 1 9 chr5 114782462 114782636 -37754623 + B3A SINE B2 2 170 -46 6 1460 972 73 0 68 chr5 114782781 114783783 -37753476 + (CCTG)n Simple_repeat Simple_repeat 1 933 0 6 1460 243 146 0 0 chr5 114784226 114784281 -37752978 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1460 201 255 0 18 chr5 114784285 114784341 -37752918 + GA-rich Low_complexity Low_complexity 1 55 0 6 1460 2970 124 136 17 chr5 114784479 114784769 -37752490 + RMER4B LTR ERVK 1 330 -255 6 1460 1437 75 0 16 chr5 114784769 114784959 -37752300 + B2_Mm2 SINE B2 2 188 -7 6 1460 2970 124 136 17 chr5 114784959 114785191 -37752068 + RMER4B LTR ERVK 331 585 0 6 1460 1188 75 0 0 chr5 114785212 114785359 -37751900 + B1_Mm SINE Alu 1 147 0 6 1460 213 39 0 0 chr5 114785359 114785385 -37751874 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1460 482 282 48 60 chr5 114785401 114785567 -37751692 - RSINE1 SINE B4 0 165 2 6 1460 711 269 15 51 chr5 114785591 114785787 -37751472 - B3A SINE B2 -9 189 1 6 1460 401 308 13 0 chr5 114785820 114785976 -37751283 + L1_Rod LINE L1 3770 3927 -1920 6 1460 428 45 14 29 chr5 114786055 114786124 -37751135 - L1_Mus2 LINE L1 0 6566 6499 6 1460 360 180 49 0 chr5 114786428 114786496 -37750763 + B1F SINE Alu 55 125 -25 6 1460 198 174 0 0 chr5 114786516 114786562 -37750697 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1460 307 196 25 6 chr5 114786600 114786759 -37750500 + (TG)n Simple_repeat Simple_repeat 2 163 0 6 1460 274 186 35 0 chr5 114786871 114787016 -37750243 + (TG)n Simple_repeat Simple_repeat 2 151 0 7 1460 215 250 7 0 chr5 114787040 114787188 -37750071 + (TG)n Simple_repeat Simple_repeat 2 150 0 7 1460 357 99 24 12 chr5 114787268 114787350 -37749909 + (TG)n Simple_repeat Simple_repeat 1 83 0 7 1460 320 235 176 0 chr5 114787551 114787636 -37749623 + PB1D10 SINE Alu 1 100 -17 7 1460 473 250 10 0 chr5 114787670 114787766 -37749493 + PB1D10 SINE Alu 4 100 -17 7 1460 341 231 76 55 chr5 114788345 114788582 -37748677 + B4 SINE B4 1 289 -3 7 1460 469 200 8 76 chr5 114788728 114788847 -37748412 + PB1D10 SINE Alu 1 111 -6 7 1460 1224 91 55 28 chr5 114789125 114789306 -37747953 - B2_Mm2 SINE B2 -9 186 1 7 1460 258 155 0 0 chr5 114789338 114789387 -37747872 + B2_Mm2 SINE B2 2 50 -148 7 1460 234 299 45 0 chr5 114789461 114789528 -37747731 + ID4_ SINE ID 5 74 -9 7 1460 324 308 20 5 chr5 114789786 114789948 -37747311 - B4A SINE B4 -75 217 7 7 1460 1660 140 155 31 chr5 114789950 114790304 -37746955 - RMER10B LTR ERVL 0 398 1 7 1460 672 174 24 92 chr5 114790338 114790502 -37746757 - RSINE1 SINE B4 -2 163 11 7 1460 189 0 0 0 chr5 114790508 114790529 -37746730 + (CTG)n Simple_repeat Simple_repeat 2 22 0 7 1460 829 176 6 6 chr5 114790527 114790704 -37746555 + CT-rich Low_complexity Low_complexity 2 178 0 7 1460 214 143 23 45 chr5 114791155 114791180 -37746079 + polypyrimidine Low_complexity Low_complexity 19 44 0 7 1460 1074 140 0 0 chr5 114791180 114791359 -37745900 + (TCC)n Simple_repeat Simple_repeat 2 180 0 7 1460 214 143 23 45 chr5 114791359 114791377 -37745882 + polypyrimidine Low_complexity Low_complexity 2 18 0 7 1460 1179 117 0 0 chr5 114791378 114791558 -37745701 + (TCC)n Simple_repeat Simple_repeat 1 180 0 7 1460 643 221 84 0 chr5 114791560 114791691 -37745568 - B1_Mur1 SINE Alu -6 143 2 7 1460 541 205 0 18 chr5 114791691 114791805 -37745454 + B3 SINE B2 103 214 -2 7 1460 288 209 43 29 chr5 114791818 114791887 -37745372 - BC1_Mm scRNA scRNA -81 71 2 7 1460 243 0 0 0 chr5 114792427 114792454 -37744805 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1460 1121 95 0 7 chr5 114792454 114792602 -37744657 - B1_Mus2 SINE Alu 0 147 1 7 1460 268 75 57 0 chr5 114792603 114792656 -37744603 - B2_Mm2 SINE B2 -3 192 137 7 1460 223 270 0 31 chr5 114792645 114792710 -37744549 - B3 SINE B2 -107 109 47 7 1460 1253 110 35 0 chr5 114792742 114792915 -37744344 - B2_Mm1t SINE B2 -14 179 1 7 1460 243 253 43 21 chr5 114793403 114793496 -37743763 - L1MB8 LINE L1 -26 6152 6058 7 1460 1231 35 7 0 chr5 114793519 114793664 -37743595 - B1_Mm SINE Alu -1 146 1 7 1460 367 201 130 33 chr5 114794064 114794157 -37743102 - PB1D10 SINE Alu -1 126 25 7 1460 250 292 22 0 chr5 114794165 114794254 -37743005 - L1M4 LINE L1 -515 5664 5574 7 1460 402 284 78 0 chr5 114794340 114794541 -37742718 - L1M4 LINE L1 -765 5419 5197 7 1460 276 143 33 82 chr5 114794579 114794640 -37742619 + RMER2 LTR ERV1 200 257 -310 7 1460 345 253 11 33 chr5 114794878 114794968 -37742291 + B1F2 SINE Alu 62 149 0 7 1460 2270 84 14 101 chr5 114795464 114795822 -37741437 - ORR1A2 LTR MaLR 0 327 1 7 1460 272 321 108 36 chr5 114796048 114796065 -37741194 + B1F1 SINE Alu 1 149 0 7 1460 346 322 41 33 chr5 114796065 114796187 -37741072 + ID_B1 SINE B4 102 224 0 7 1460 457 225 35 35 chr5 114796275 114796390 -37740869 + PB1D10 SINE Alu 3 117 0 7 1460 1190 98 16 49 chr5 114796490 114796632 -37740627 + B2_Mm2 SINE B2 1 145 -50 7 1460 198 0 0 0 chr5 114796632 114796654 -37740605 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1460 1190 98 16 49 chr5 114796654 114796694 -37740565 + B2_Mm2 SINE B2 146 177 -18 7 1460 296 167 42 0 chr5 114796739 114796835 -37740424 + (TA)n Simple_repeat Simple_repeat 1 100 0 7 1460 236 316 75 50 chr5 114797905 114798025 -37739234 - ORR1E LTR MaLR -172 187 65 7 1460 582 286 78 70 chr5 114798596 114798852 -37738407 + B4 SINE B4 1 258 -34 7 1460 441 0 0 0 chr5 114798853 114798902 -37738357 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1460 577 195 203 0 chr5 114800705 114800828 -37736431 + B1_Mur2 SINE Alu 2 149 0 7 1460 234 0 0 0 chr5 114800828 114800854 -37736405 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1460 483 280 94 59 chr5 114800873 114801127 -37736132 + B4A SINE B4 7 269 -23 7 1460 186 43 0 0 chr5 114801129 114801152 -37736107 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1460 225 83 0 0 chr5 114801153 114801189 -37736070 + (CAGAGA)n Simple_repeat Simple_repeat 2 37 0 7 1460 300 276 71 10 chr5 114801820 114801919 -37735340 + RMER30 DNA MER1_type 5 109 -93 7 1460 2478 174 12 30 chr5 114802574 114803044 -37734215 - RLTR16 LTR ERVK 0 505 44 7 1460 1444 64 16 0 chr5 114803044 114803231 -37734028 + B2_Mm1t SINE B2 1 190 -3 7 1460 2478 174 12 30 chr5 114803231 114803268 -37733991 - RLTR16 LTR ERVK -462 43 7 7 1460 231 307 62 134 chr5 114803453 114803758 -37733501 - MLT1B LTR MaLR -53 337 55 7 1460 333 336 106 14 chr5 114804453 114804595 -37732664 - MIRb SINE MIR -81 187 33 7 1460 247 213 0 0 chr5 114804599 114804646 -37732613 - ID4 SINE ID -34 49 3 7 1460 841 257 116 23 chr5 114805455 114805714 -37731545 - B4A SINE B4 -9 283 1 7 1460 246 167 32 32 chr5 114805802 114805864 -37731395 - L1ME3B LINE L1 -229 6011 5950 7 1460 270 29 0 0 chr5 114805954 114805988 -37731271 - U2 snRNA snRNA -154 34 1 7 1460 1348 111 16 0 chr5 114806046 114806236 -37731023 - B2_Mm2 SINE B2 -2 193 1 7 1460 405 329 113 6 chr5 114806237 114806405 -37730854 - MER58A DNA MER1_type -36 188 3 7 1460 351 0 0 0 chr5 114806503 114806542 -37730717 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1460 354 263 128 49 chr5 114807133 114807297 -37729962 - B3A SINE B2 -18 180 4 7 1460 1226 96 33 22 chr5 114807589 114807770 -37729489 - B2_Mm2 SINE B2 -10 185 3 7 1460 441 253 0 0 chr5 114808270 114808357 -37728902 - PB1D10 SINE Alu -15 102 16 7 1460 1125 112 144 30 chr5 114808442 114808644 -37728615 - URR1A DNA MER1_type 0 226 2 7 1460 269 238 48 36 chr5 114809279 114809362 -37727897 - Cheshire DNA MER1_type -2171 249 166 7 1460 336 284 137 68 chr5 114810612 114810831 -37726428 - B4A SINE B4 -15 277 44 7 1460 957 79 79 0 chr5 114810880 114811007 -37726252 - B1_Mus1 SINE Alu -11 137 1 7 1460 24 0 0 0 chr5 114812230 114812254 -37725005 + GC_rich Low_complexity Low_complexity 1 24 0 7 1460 255 182 127 0 chr5 114816412 114816467 -37720792 + RSINE1 SINE B4 1 62 -103 7 1460 225 170 64 0 chr5 114817935 114817982 -37719277 + Lx LINE L1 5663 5712 -942 7 1460 213 108 0 0 chr5 114818696 114818733 -37718526 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1460 253 310 0 9 chr5 114818764 114818878 -37718381 + (CA)n Simple_repeat Simple_repeat 1 113 0 7 1460 198 0 0 0 chr5 114818910 114818932 -37718327 + (CA)n Simple_repeat Simple_repeat 2 23 0 7 1461 430 206 73 18 chr5 114819473 114819582 -37717677 - PB1D10 SINE Alu 0 117 3 7 1461 249 258 0 16 chr5 114821440 114821503 -37715756 - MER20 DNA MER1_type -126 93 32 7 1461 234 286 32 0 chr5 114821627 114821690 -37715569 + GA-rich Low_complexity Low_complexity 2 66 0 7 1461 187 323 0 30 chr5 114822684 114822751 -37714508 - MER5B DNA MER1_type -61 117 53 7 1461 527 174 0 21 chr5 114822840 114822934 -37714325 - ID_B1 SINE B4 -68 156 65 7 1461 189 164 273 0 chr5 114824611 114824666 -37712593 - MIRm SINE MIR -124 152 83 7 1461 282 219 23 58 chr5 114824688 114824775 -37712484 + L2b LINE L2 3088 3171 -204 7 1461 275 241 249 17 chr5 114825903 114826076 -37711183 + MER90 LTR ERV1 2 214 -361 7 1461 189 0 0 0 chr5 114826640 114826661 -37710598 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1461 457 309 11 22 chr5 114828157 114828336 -37708923 - MER5B DNA MER1_type -1 177 1 7 1461 195 313 134 13 chr5 114828702 114828827 -37708432 + MIRc SINE MIR 34 168 -94 7 1461 711 0 0 0 chr5 114828986 114829065 -37708194 + (CCTG)n Simple_repeat Simple_repeat 1 79 0 7 1461 352 280 60 2 chr5 114831212 114831354 -37705905 + MIR3 SINE MIR 15 157 -111 7 1461 195 299 0 0 chr5 114831995 114832051 -37705208 + MIRb SINE MIR 44 106 -162 7 1461 23 33 0 0 chr5 114832820 114832850 -37704409 + AT_rich Low_complexity Low_complexity 1 30 0 7 1461 584 267 194 0 chr5 114832876 114833041 -37704218 - B3 SINE B2 -17 199 3 7 1461 723 195 88 6 chr5 114833274 114833444 -37703815 + B3A SINE B2 5 188 -10 7 1461 639 168 342 0 chr5 114834066 114834227 -37703032 - B3 SINE B2 0 216 1 7 1461 227 260 0 0 chr5 114834544 114834594 -37702665 + ID4_ SINE ID 3 52 -31 7 1461 1405 97 0 0 chr5 114834866 114835052 -37702207 + B2_Mm2 SINE B2 3 188 -7 7 1461 698 327 50 14 chr5 114835272 114835551 -37701708 + B4A SINE B4 4 292 0 7 1461 1216 62 0 0 chr5 114835766 114835912 -37701347 + B1_Mus2 SINE Alu 2 147 0 7 1461 708 204 58 58 chr5 114835949 114836157 -37701102 - B3 SINE B2 -8 208 1 7 1461 248 321 239 0 chr5 114836185 114836294 -37700965 + RSINE1 SINE B4 10 144 -21 7 1461 275 0 29 0 chr5 114836308 114836343 -37700916 + (CA)n Simple_repeat Simple_repeat 2 37 0 7 1461 22 35 0 0 chr5 114836473 114836502 -37700757 + AT_rich Low_complexity Low_complexity 1 29 0 7 1461 300 27 0 0 chr5 114838609 114838646 -37698613 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1461 600 239 135 41 chr5 114839395 114839661 -37697598 + B4A SINE B4 2 292 0 7 1461 527 297 55 6 chr5 114839980 114840163 -37697096 - MIR SINE MIR -30 232 41 7 1461 819 137 0 0 chr5 114840734 114840865 -37696394 + B1_Mus1 SINE Alu 8 138 -10 7 1461 249 57 0 0 chr5 114840865 114840900 -37696359 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1461 882 251 43 10 chr5 114840902 114841111 -37696148 + B3 SINE B2 1 216 0 8 1461 297 0 0 0 chr5 114841418 114841451 -37695808 + (TTG)n Simple_repeat Simple_repeat 3 35 0 8 1461 442 292 113 19 chr5 114841807 114842020 -37695239 - ORR1D2 LTR MaLR -131 239 7 8 1461 417 179 24 12 chr5 114842951 114843036 -37694223 - B1_Mur1 SINE Alu -2 147 62 8 1461 477 239 129 7 chr5 114844050 114844189 -37693070 + ID_B1 SINE B4 50 205 -19 8 1461 255 277 0 15 chr5 114844455 114844521 -37692738 + (CACG)n Simple_repeat Simple_repeat 1 65 0 8 1461 352 305 45 15 chr5 114844735 114844868 -37692391 - MIRb SINE MIR -109 159 23 8 1461 536 281 59 56 chr5 114845719 114845971 -37691288 - ORR1D2 LTR MaLR -75 284 22 8 1461 295 284 135 49 chr5 114846005 114846168 -37691091 + MTE2a LTR MaLR 63 239 -140 8 1461 270 210 145 0 chr5 114846248 114846310 -37690949 - ID4_ SINE ID -12 71 1 8 1461 228 256 37 37 chr5 114846324 114846405 -37690854 - L1MB8 LINE L1 -18 6160 6080 8 1461 240 243 28 40 chr5 114846793 114846969 -37690290 + (TG)n Simple_repeat Simple_repeat 1 174 0 8 1461 325 285 92 13 chr5 114847117 114847270 -37689989 - L1MB8 LINE L1 -721 5463 5299 8 1461 430 313 128 6 chr5 114847382 114847703 -37689556 - L1MB8 LINE L1 -821 5325 4966 8 1461 439 226 69 0 chr5 114847812 114847914 -37689345 - PB1D10 SINE Alu -7 110 2 8 1461 1079 58 65 0 chr5 114849455 114849593 -37687666 + B1_Mm SINE Alu 1 147 0 8 1461 321 135 0 0 chr5 114849593 114849645 -37687614 + (A)n Simple_repeat Simple_repeat 1 52 0 8 1461 1230 58 91 17 chr5 114850076 114850252 -37687007 + B2_Mm2 SINE B2 1 189 -6 8 1461 298 138 117 33 chr5 114850282 114850342 -37686917 + ID4_ SINE ID 5 69 -14 8 1461 281 320 105 19 chr5 114851064 114851169 -37686090 - PB1D10 SINE Alu -18 130 16 8 1461 263 292 61 84 chr5 114851094 114851225 -37686034 - ID_B1 SINE B4 -46 178 51 8 1461 180 279 114 26 chr5 114852077 114852191 -37685068 - L2 LINE L2 -1831 1588 1465 8 1461 280 304 108 31 chr5 114853553 114853682 -37683577 + MER58A DNA MER1_type 20 158 -66 8 1461 396 55 0 0 chr5 114853930 114853985 -37683274 + (TG)n Simple_repeat Simple_repeat 2 56 0 8 1461 1002 147 0 0 chr5 114853997 114854140 -37683119 - B1_Mus1 SINE Alu -2 146 4 8 1461 443 226 0 102 chr5 114854815 114854933 -37682326 + PB1 SINE Alu 22 127 0 8 1461 186 306 0 0 chr5 114855228 114855277 -37681982 + MIRb SINE MIR 120 168 -100 8 1461 380 191 11 0 chr5 114855605 114855699 -37681560 + (TCCA)n Simple_repeat Simple_repeat 4 98 0 8 1461 980 204 122 30 chr5 114860034 114860374 -37676885 - MTC LTR MaLR 0 421 20 8 1461 640 209 0 9 chr5 114861469 114861585 -37675674 + PB1D10 SINE Alu 1 115 -2 8 1461 268 235 15 0 chr5 114863994 114864062 -37673197 + GA-rich Low_complexity Low_complexity 2 70 0 8 1461 306 0 0 0 chr5 114864170 114864204 -37673055 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1461 1179 116 0 50 chr5 114864298 114864480 -37672779 - B2_Mm1a SINE B2 -19 174 2 8 1461 243 122 0 0 chr5 114865155 114865204 -37672055 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 8 1461 631 128 0 12 chr5 114865964 114866082 -37671177 + B1_Mur4 SINE Alu 10 150 0 8 1461 425 264 96 0 chr5 114866197 114866322 -37670937 - B1F SINE Alu -9 140 4 8 1461 426 260 126 46 chr5 114866600 114866768 -37670491 - ID_B1 SINE B4 -44 248 71 8 1461 658 216 153 28 chr5 114867274 114867450 -37669809 - B3A SINE B2 0 198 1 8 1461 543 143 11 0 chr5 114867892 114867983 -37669276 - RMER4A LTR ERVK 0 466 375 8 1461 348 24 0 0 chr5 114867984 114868025 -37669234 + (GA)n Simple_repeat Simple_repeat 1 41 0 8 1461 282 318 24 0 chr5 114873193 114873272 -37663987 + PB1D10 SINE Alu 9 89 -28 8 1461 382 268 107 0 chr5 114873272 114873384 -37663875 + B1_Mus2 SINE Alu 1 124 -25 8 1461 288 0 0 0 chr5 114873409 114873441 -37663818 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1461 201 398 90 6 chr5 114873593 114873770 -37663489 - MIRb SINE MIR -43 225 34 8 1461 206 227 0 0 chr5 114874357 114874401 -37662858 - MIRc SINE MIR -111 157 114 8 1461 261 0 0 0 chr5 114876163 114876192 -37661067 + (TC)n Simple_repeat Simple_repeat 2 30 0 8 1461 732 219 4 0 chr5 114876192 114876458 -37660801 + (TA)n Simple_repeat Simple_repeat 1 267 0 8 1461 622 222 0 22 chr5 114876498 114876682 -37660577 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 8 1461 415 141 0 0 chr5 114876682 114876746 -37660513 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1461 247 93 91 23 chr5 114877597 114877641 -37659618 + ORR1C2 LTR MaLR 338 384 0 8 1461 726 255 66 10 chr5 114877781 114877979 -37659280 - ID_B1 SINE B4 0 224 16 8 1461 333 349 101 20 chr5 114879585 114879734 -37657525 - RSINE1 SINE B4 -2 163 3 8 1461 282 362 19 0 chr5 114879770 114879875 -37657384 + PB1D10 SINE Alu 3 109 -8 8 1461 293 209 10 122 chr5 114880012 114880110 -37657149 + PB1D10 SINE Alu 2 88 -29 8 1461 182 315 62 52 chr5 114880265 114880362 -37656897 - MIRc SINE MIR -122 146 49 8 1461 548 268 0 59 chr5 114880532 114880667 -37656592 - PB1 SINE Alu 0 127 1 8 1461 310 258 11 0 chr5 114881674 114881763 -37655496 + L1MB7 LINE L1 6095 6184 0 8 1461 348 43 0 0 chr5 114882961 114883007 -37654252 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1461 874 293 106 57 chr5 114883575 114884017 -37653242 + RMER4A LTR ERVK 1 464 -2 8 1461 506 309 67 0 chr5 114884105 114884270 -37652989 - MER20 DNA MER1_type -7 212 37 8 1461 887 68 38 0 chr5 114888183 114888315 -37648944 + B1_Mus2 SINE Alu 11 147 0 8 1461 2807 180 31 15 chr5 114888677 114889196 -37648063 + RLTR11A2 LTR ERVK 1 527 0 8 1461 865 223 101 5 chr5 114889205 114889394 -37647865 + B3 SINE B2 1 207 -9 8 1461 279 328 76 71 chr5 114889674 114889871 -37647388 + MER90 LTR ERV1 194 391 -184 8 1461 532 240 32 24 chr5 114890405 114890529 -37646730 + RSINE1 SINE B4 1 125 -40 8 1461 444 19 0 0 chr5 114890555 114890608 -37646651 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1461 557 175 0 231 chr5 114890668 114890740 -37646519 - B1F2 SINE Alu 0 149 81 8 1461 452 72 14 0 chr5 114890740 114890809 -37646450 + (CA)n Simple_repeat Simple_repeat 1 70 0 8 1461 557 175 0 231 chr5 114890809 114890922 -37646337 - B1F2 SINE Alu -69 80 7 8 1461 252 311 0 0 chr5 114890863 114890937 -37646322 - B4A SINE B4 -142 150 77 8 1461 869 108 15 8 chr5 114890986 114891116 -37646143 + B1_Mus1 SINE Alu 2 132 -16 8 1461 531 207 0 20 chr5 114891122 114891275 -37645984 + (TATG)n Simple_repeat Simple_repeat 2 151 0 8 1461 688 186 11 17 chr5 114891291 114891471 -37645788 + (TATG)n Simple_repeat Simple_repeat 2 180 0 8 1461 653 186 18 12 chr5 114891522 114891691 -37645568 + (TATG)n Simple_repeat Simple_repeat 3 172 0 8 1461 372 299 37 9 chr5 114891691 114891799 -37645460 - B3A SINE B2 -16 182 72 8 1461 390 238 30 0 chr5 114891865 114891966 -37645293 - BC1_Mm scRNA scRNA -48 104 1 8 1461 1238 34 0 13 chr5 114892002 114892151 -37645108 + B1_Mm SINE Alu 1 147 0 8 1461 492 279 54 0 chr5 114892162 114892291 -37644968 - B1F2 SINE Alu -13 136 1 8 1461 1062 68 191 0 chr5 114892307 114892325 -37644934 - B2_Mm1t SINE B2 0 193 176 8 1461 279 0 0 0 chr5 114892325 114892356 -37644903 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 8 1461 1062 68 191 0 chr5 114892356 114892499 -37644760 - B2_Mm1t SINE B2 -18 175 2 8 1461 1031 99 31 0 chr5 114892501 114892662 -37644597 - B2_Mm2 SINE B2 -3 192 27 8 1461 192 288 132 3 chr5 114893183 114893291 -37643968 - MIR SINE MIR -138 138 19 8 1461 765 194 7 0 chr5 114895159 114895298 -37641961 - B1_Mur3 SINE Alu -8 141 2 8 1461 447 19 0 0 chr5 114895337 114895389 -37641870 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1461 900 50 215 0 chr5 114895505 114895626 -37641633 + B1_Mus1 SINE Alu 1 147 -1 8 1461 291 313 43 9 chr5 114895783 114895899 -37641360 - L2 LINE L2 -1097 2322 2203 8 1461 260 176 97 86 chr5 114895908 114896001 -37641258 - MIRb SINE MIR -52 216 123 8 1461 416 115 19 17 chr5 114896486 114896566 -37640693 - PB1D9 SINE Alu -56 91 6 8 1461 793 232 266 7 chr5 114896668 114896942 -37640317 - MTEa LTR MaLR -2 377 33 8 1461 473 302 0 0 chr5 114896958 114897077 -37640182 + ID_B1 SINE B4 105 223 -1 8 1461 522 121 66 6 chr5 114899382 114899549 -37637710 + (TG)n Simple_repeat Simple_repeat 2 178 0 8 1461 450 126 64 21 chr5 114899563 114899800 -37637459 + (TG)n Simple_repeat Simple_repeat 1 247 0 8 1461 266 209 75 0 chr5 114899811 114899878 -37637381 - ID2 SINE ID -10 73 2 8 1461 203 318 141 22 chr5 114900017 114900152 -37637107 - MIRb SINE MIR -80 188 38 8 1461 228 215 106 15 chr5 114900950 114901016 -37636243 + MIRc SINE MIR 112 183 -85 8 1461 254 300 49 20 chr5 114901776 114901878 -37635381 - PB1D10 SINE Alu -1 116 12 8 1461 259 306 0 0 chr5 114902076 114902148 -37635111 - MIRc SINE MIR -122 146 75 8 1461 588 29 0 0 chr5 114904267 114904337 -37632922 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 8 1461 735 108 0 0 chr5 114905661 114905772 -37631487 + (CA)n Simple_repeat Simple_repeat 2 112 0 8 1461 313 297 33 0 chr5 114906778 114906869 -37630390 - MIRc SINE MIR -119 149 56 8 1461 1270 119 0 26 chr5 114906899 114907089 -37630170 - B2_Mm2 SINE B2 -10 185 1 8 1461 544 177 21 0 chr5 114907094 114907190 -37630069 - B1_Mur1 SINE Alu 0 149 52 8 1461 185 292 26 94 chr5 114907886 114908003 -37629256 + MIR SINE MIR 65 173 -89 8 1461 205 226 0 54 chr5 114909144 114909200 -37628059 + MIRm SINE MIR 79 131 -145 8 1461 318 106 0 0 chr5 114909542 114909589 -37627670 + (TCC)n Simple_repeat Simple_repeat 1 47 0 8 1461 3088 74 26 3 chr5 114910702 114911093 -37626166 - MTB LTR MaLR 0 400 1 8 1461 185 303 106 0 chr5 114911669 114911735 -37625524 - MIRc SINE MIR -115 153 81 9 1461 459 0 0 0 chr5 114912350 114912401 -37624858 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1461 337 215 0 0 chr5 114912436 114912501 -37624758 - RSINE1 SINE B4 -98 67 3 9 1461 212 371 99 22 chr5 114912630 114912812 -37624447 + MIRb SINE MIR 65 260 -8 9 1461 1076 96 0 33 chr5 114913395 114913546 -37623713 + B1_Mus1 SINE Alu 3 148 0 9 1461 1401 64 41 0 chr5 114913568 114913740 -37623519 + B2_Mm2 SINE B2 3 181 -14 9 1461 253 0 54 0 chr5 114913781 114913818 -37623441 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 9 1461 1151 76 0 0 chr5 114913818 114913963 -37623296 - B1_Mus2 SINE Alu -2 145 1 9 1461 267 266 153 24 chr5 114914969 114915124 -37622135 - MIR SINE MIR -71 191 21 9 1461 188 369 0 0 chr5 114915199 114915264 -37621995 + MIRm SINE MIR 83 147 -129 9 1461 181 227 227 0 chr5 114915504 114915570 -37621689 - MIRb SINE MIR -133 135 55 9 1461 21 57 0 0 chr5 114916055 114916090 -37621169 + GC_rich Low_complexity Low_complexity 1 35 0 9 1461 527 78 0 13 chr5 114916745 114916823 -37620436 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 9 1461 624 240 0 0 chr5 114916839 114916964 -37620295 - ID_B1 SINE B4 -15 209 85 9 1461 180 0 0 0 chr5 114917281 114917301 -37619958 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1461 258 320 68 30 chr5 114917878 114918010 -37619249 + MIRb SINE MIR 8 144 -124 9 1461 317 194 19 11 chr5 114918074 114918158 -37619101 - B1F SINE Alu -13 107 26 9 1461 2685 32 0 0 chr5 114918322 114918660 -37618599 + ORR1A1 LTR MaLR 1 338 -8 9 1461 424 302 52 0 chr5 114919479 114919595 -37617664 + RSINE1 SINE B4 3 124 -41 9 1461 333 0 0 0 chr5 114919597 114919634 -37617625 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1461 306 188 0 99 chr5 114919738 114919749 -37617510 + B4A SINE B4 83 86 -206 9 1461 410 269 15 5 chr5 114919749 114919882 -37617377 + PB1D10 SINE Alu 2 138 -11 9 1461 2619 137 40 45 chr5 114920170 114920590 -37616669 + MTC LTR MaLR 1 418 -3 9 1461 4863 165 133 27 chr5 114920594 114921517 -37615742 + MTC-int LTR MaLR 26 1039 -219 9 1461 1126 68 0 52 chr5 114921517 114921672 -37615587 - B1_Mus2 SINE Alu 0 147 1 9 1461 4863 165 133 27 chr5 114921672 114921863 -37615396 + MTC-int LTR MaLR 1040 1257 -1 9 1461 2324 147 32 12 chr5 114921868 114922268 -37614991 + MTC LTR MaLR 3 410 -11 9 1461 865 246 31 5 chr5 114922593 114922785 -37614474 - ID_B1 SINE B4 -27 197 1 9 1461 830 53 0 0 chr5 114923385 114923498 -37613761 - B1_Mus1 SINE Alu -35 113 1 9 1461 423 259 7 86 chr5 114923498 114923530 -37613729 - MT2B LTR ERVL -330 249 132 9 1461 269 374 48 8 chr5 114924258 114924382 -37612877 - MIR SINE MIR -91 171 43 9 1461 190 312 13 13 chr5 114924895 114924973 -37612286 - MIR3 SINE MIR -27 181 104 9 1461 724 125 10 20 chr5 114926129 114926261 -37610998 + B1_Mus1 SINE Alu 20 148 -1 9 1461 218 192 0 0 chr5 114926261 114926313 -37610946 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 9 1461 202 262 154 10 chr5 114926827 114926931 -37610328 + MIR3 SINE MIR 60 178 -30 9 1461 484 243 10 0 chr5 114927471 114927574 -37609685 + PB1D10 SINE Alu 14 117 0 9 1461 795 196 3 0 chr5 114929394 114929689 -37607570 + CT-rich Low_complexity Low_complexity 1 296 0 9 1461 3692 130 36 10 chr5 114929977 114930590 -37606669 - RMER19A LTR ERVK -108 629 1 9 1461 2096 117 40 68 chr5 114930625 114930790 -37606469 + MTC LTR MaLR 36 197 -224 9 1461 701 191 91 43 chr5 114930790 114930976 -37606283 + B2_Mm2 SINE B2 1 195 0 9 1461 2096 117 40 68 chr5 114930976 114931206 -37606053 + MTC LTR MaLR 198 420 -1 9 1461 288 77 0 0 chr5 114931443 114931482 -37605777 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 9 1461 285 298 86 9 chr5 114931521 114931626 -37605633 + Charlie1a DNA MER1_type 640 752 -703 9 1461 222 37 0 0 chr5 114931628 114931655 -37605604 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 9 1461 306 125 0 0 chr5 114931656 114931704 -37605555 + (T)n Simple_repeat Simple_repeat 1 48 0 9 1461 846 110 86 29 chr5 114931704 114931844 -37605415 - B1_Mus1 SINE Alu 0 148 1 9 1461 429 204 0 136 chr5 114931901 114932026 -37605233 + RSINE1 SINE B4 22 129 -36 9 1461 349 330 212 46 chr5 114932035 114932426 -37604833 + Charlie1a DNA MER1_type 730 1185 -270 9 1461 447 19 0 0 chr5 114933177 114933229 -37604030 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1461 425 200 197 53 chr5 114933270 114933402 -37603857 - B3A SINE B2 -46 152 2 9 1461 255 204 0 0 chr5 114933404 114933458 -37603801 + T-rich Low_complexity Low_complexity 1 54 0 9 1461 1127 84 7 0 chr5 114933458 114933601 -37603658 - B1_Mus1 SINE Alu 0 148 5 9 1461 320 348 17 0 chr5 114933606 114933721 -37603538 - PB1D10 SINE Alu 0 117 1 9 1461 420 290 0 9 chr5 114933762 114933870 -37603389 - MIRb SINE MIR -112 156 50 9 1461 1940 173 86 2 chr5 114934335 114934676 -37602583 - BGLII_B LTR ERVK 0 441 70 9 1461 273 29 0 0 chr5 114934676 114934710 -37602549 + (TGG)n Simple_repeat Simple_repeat 3 36 0 9 1461 1940 173 86 2 chr5 114934710 114934763 -37602496 - BGLII_B LTR ERVK -372 69 16 9 1461 2370 171 46 35 chr5 114935146 114935665 -37601594 - RLTR20B3 LTR ERVK 0 577 29 9 1461 336 64 0 0 chr5 114936339 114936386 -37600873 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1461 207 0 0 0 chr5 114936782 114936805 -37600454 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1461 533 118 353 0 chr5 114936805 114936907 -37600352 - B1_Mus1 SINE Alu -9 139 2 9 1461 370 300 7 91 chr5 114937199 114937249 -37600010 + ID_B1 SINE B4 53 193 -31 9 1461 470 289 0 0 chr5 114937249 114937353 -37599906 + B1F1 SINE Alu 12 115 -34 9 1461 212 288 15 29 chr5 114937345 114937413 -37599846 + PB1D7 SINE Alu 49 115 -5 9 1461 1330 89 56 0 chr5 114937426 114937606 -37599653 - B2_Mm2 SINE B2 -5 190 1 9 1461 271 234 46 126 chr5 114937701 114937754 -37599505 + B2_Mm1t SINE B2 47 139 -56 9 1461 277 233 17 0 chr5 114937754 114937814 -37599445 + RCHARR1 DNA MER1_type 533 593 -381 9 1461 271 234 46 126 chr5 114937814 114937831 -37599428 + B2_Mm1t SINE B2 140 172 -23 9 1461 1207 48 7 0 chr5 114937831 114937977 -37599282 + B1_Mus1 SINE Alu 2 148 0 9 1461 257 248 80 93 chr5 114937977 114937997 -37599262 + B2_Mm2 SINE B2 173 195 0 9 1461 792 339 92 28 chr5 114938027 114938486 -37598773 + Lx7 LINE L1 6843 7330 -366 9 1461 931 180 0 0 chr5 114938497 114938647 -37598612 - B1_Mur4 SINE Alu 0 150 1 9 1461 473 260 144 0 chr5 114938686 114938859 -37598400 + RCHARR1 DNA MER1_type 747 944 -30 9 1461 1390 76 43 0 chr5 114938931 114939115 -37598144 + B2_Mm2 SINE B2 4 195 0 9 1461 534 200 0 33 chr5 114939120 114939270 -37597989 + GA-rich Low_complexity Low_complexity 2 146 0 9 1461 224 183 83 14 chr5 114939532 114939604 -37597655 - MIRc SINE MIR -98 170 94 9 1461 236 288 22 58 chr5 114940036 114940181 -37597078 + MIRb SINE MIR 76 217 -51 9 1461 257 326 15 36 chr5 114940222 114940359 -37596900 + (TGGG)n Simple_repeat Simple_repeat 3 136 0 9 1461 657 240 40 118 chr5 114941371 114941668 -37595591 - MTE2a LTR MaLR -9 370 103 9 1461 829 269 35 59 chr5 114941668 114941956 -37595303 - RLTR41 LTR ERV1 0 446 166 9 1461 275 258 0 15 chr5 114941981 114942048 -37595211 - MTE2a LTR MaLR -273 146 81 9 1461 3131 23 0 0 chr5 114942405 114942751 -37594508 + MTA_Mm LTR MaLR 1 346 0 9 1461 9425 23 3 29 chr5 114942753 114943729 -37593530 + MTA_Mm-int LTR MaLR 1 963 -135 9 1461 1546 27 5 0 chr5 114943729 114943916 -37593343 - B2_Mm1t SINE B2 -5 188 1 9 1461 8887 23 3 29 chr5 114943916 114944066 -37593193 + MTA_Mm-int LTR MaLR 964 1098 0 9 1461 3254 45 0 0 chr5 114944066 114944462 -37592797 + MTA_Mm LTR MaLR 1 396 0 9 1461 470 189 22 0 chr5 114944464 114944554 -37592705 + MTC LTR MaLR 1 92 -329 9 1461 1961 123 14 60 chr5 114944559 114944912 -37592347 - ORR1A1 LTR MaLR -8 338 2 9 1461 939 126 31 98 chr5 114944912 114945104 -37592155 + MTC LTR MaLR 88 266 -155 9 1461 4134 156 251 20 chr5 114945104 114945429 -37591830 + MTC-int LTR MaLR 2 439 -819 9 1461 270 0 0 0 chr5 114945429 114945459 -37591800 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1461 4134 156 251 20 chr5 114945459 114946154 -37591105 + MTC-int LTR MaLR 440 1258 0 9 1461 2542 148 0 26 chr5 114946154 114946583 -37590676 + MTC LTR MaLR 1 418 -3 9 1461 431 240 0 30 chr5 114946601 114946700 -37590559 - RSINE1 SINE B4 -61 104 9 9 1461 656 136 93 0 chr5 114946846 114946964 -37590295 - B1_Mur1 SINE Alu -1 148 20 9 1461 461 241 0 43 chr5 114946967 114947084 -37590175 + B1_Mur1 SINE Alu 38 149 0 9 1461 825 102 60 0 chr5 114947107 114947441 -37589818 + (TAGA)n Simple_repeat Simple_repeat 1 354 0 9 1461 248 120 17 152 chr5 114947464 114947523 -37589736 - B1_Mus2 SINE Alu -1 148 67 9 1461 261 0 0 0 chr5 114947561 114947590 -37589669 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1461 395 370 61 8 chr5 114947633 114947944 -37589315 - L1MB7 LINE L1 -221 5957 5631 9 1461 2062 120 73 6 chr5 114948065 114948408 -37588851 - ORR1B2 LTR MaLR -1 366 1 9 1461 360 0 0 0 chr5 114948943 114948983 -37588276 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 9 1461 1119 30 0 0 chr5 114948983 114949117 -37588142 - B1_Mus1 SINE Alu -12 136 3 9 182 463 173 27 9 chr5 114950084 114950195 -37587064 - Lx9 LINE L1 -1 7643 7531 9 1462 243 128 0 0 chr5 114950195 114950214 -37587045 + (T)n Simple_repeat Simple_repeat 1 19 0 9 1462 1103 43 7 7 chr5 114950214 114950355 -37586904 - B1_Mm SINE Alu -6 141 1 9 1462 243 128 0 0 chr5 114950355 114950382 -37586877 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1462 1457 53 0 5 chr5 114950398 114950588 -37586671 + B2_Mm2 SINE B2 1 189 -6 9 1462 228 154 136 15 chr5 114950713 114950779 -37586480 - Lx9 LINE L1 -199 7445 7372 9 1462 1278 191 40 53 chr5 114950751 114951055 -37586204 - Lx9 LINE L1 -421 7223 6924 9 1462 1399 251 75 3 chr5 114951057 114951433 -37585826 + MTD LTR MaLR 3 405 -14 9 1462 1559 244 49 92 chr5 114951456 114951948 -37585311 + RCHARR1 DNA MER1_type 188 658 -316 9 1462 635 287 13 0 chr5 114951963 114952113 -37585146 + RSINE1 SINE B4 8 159 -6 9 1462 2454 118 7 92 chr5 114952134 114952247 -37585012 - MTC LTR MaLR 0 421 343 9 1462 1079 82 0 0 chr5 114952247 114952393 -37584866 - B1_Mus2 SINE Alu -1 146 1 9 1462 2454 118 7 92 chr5 114952393 114952736 -37584523 - MTC LTR MaLR -79 342 4 9 1462 701 259 67 89 chr5 114952751 114952949 -37584310 + RCHARR1 DNA MER1_type 651 847 -127 9 1462 458 198 15 108 chr5 114952949 114953079 -37584180 - PB1D9 SINE Alu 0 120 3 9 1462 701 259 67 89 chr5 114953079 114953194 -37584065 + RCHARR1 DNA MER1_type 848 957 -17 9 1462 245 259 185 0 chr5 114953256 114953337 -37583922 - PB1 SINE Alu -10 117 22 9 1462 407 35 18 0 chr5 114953389 114953446 -37583813 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1 1462 1292 85 17 0 chr5 114953448 114953624 -37583635 - B2_Mm2 SINE B2 -16 179 1 1 1462 663 13 0 0 chr5 114953719 114953795 -37583464 + (TTCCC)n Simple_repeat Simple_repeat 2 77 0 1 1462 731 238 7 0 chr5 114953795 114953938 -37583321 - B1_Mur1 SINE Alu -5 144 1 1 1462 594 314 66 35 chr5 114954078 114954335 -37582924 - MLT1A1 LTR MaLR -73 335 71 1 1462 180 161 0 0 chr5 114955268 114955299 -37581960 - MIRc SINE MIR -116 152 122 1 1462 239 226 145 0 chr5 114955381 114955443 -37581816 + ID SINE ID 2 72 -152 1 1462 551 287 71 5 chr5 114955449 114955659 -37581600 - ORR1D2 LTR MaLR -6 364 141 1 1462 1998 72 14 0 chr5 114956392 114956668 -37580591 - MTB LTR MaLR -120 280 1 1 1462 180 135 0 0 chr5 114957385 114957422 -37579837 + (TCTCCC)n Simple_repeat Simple_repeat 5 41 0 1 1462 241 351 53 8 chr5 114957756 114957888 -37579371 + MIRc SINE MIR 81 218 -50 1 1462 485 309 133 53 chr5 114958578 114958841 -37578418 - B4A SINE B4 0 292 9 1 1462 227 322 25 34 chr5 114959973 114960092 -37577167 + MIR SINE MIR 69 186 -82 1 1462 809 153 8 0 chr5 114960953 114961084 -37576175 - B1_Mus1 SINE Alu -15 133 2 1 1462 261 218 74 37 chr5 114961226 114961307 -37575952 - PB1D10 SINE Alu -15 102 19 1 1462 1161 106 0 0 chr5 114961686 114961866 -37575393 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1462 190 279 66 12 chr5 114962266 114962359 -37574900 + MIRb SINE MIR 57 149 -127 1 1462 489 206 111 56 chr5 114962419 114962563 -37574696 - RSINE1 SINE B4 -11 154 3 1 1462 940 130 12 6 chr5 114962574 114962744 -37574515 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1 1462 396 219 6 17 chr5 114963027 114963208 -37574051 + CT-rich Low_complexity Low_complexity 2 180 0 1 1462 218 169 0 15 chr5 114963231 114963297 -37573962 + CT-rich Low_complexity Low_complexity 2 66 0 1 1462 199 133 0 0 chr5 114963779 114963809 -37573450 + MIRb SINE MIR 225 254 -14 1 1462 245 210 7 52 chr5 114964579 114964662 -37572597 + PB1D7 SINE Alu 23 98 -29 1 1462 295 280 43 0 chr5 114965033 114965126 -37572133 + PB1D10 SINE Alu 21 117 0 1 1462 435 241 292 15 chr5 114965131 114965335 -37571924 + B4A SINE B4 1 260 -32 1 1462 303 28 0 0 chr5 114965335 114965371 -37571888 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1462 247 336 45 0 chr5 114965372 114965482 -37571777 + MIRb SINE MIR 44 158 -110 1 1462 775 221 20 44 chr5 114965499 114965703 -37571556 - Tigger5 DNA MER2_type -7 2399 2201 1 1462 440 204 30 30 chr5 114965705 114965806 -37571453 + PB1D10 SINE Alu 1 101 -16 1 1462 246 179 161 0 chr5 114965807 114965863 -37571396 + MTE2a LTR MaLR 4 68 -311 1 1462 498 302 38 107 chr5 114965876 114966057 -37571202 + MTE2a LTR MaLR 135 314 -65 1 1462 342 0 0 0 chr5 114966057 114966095 -37571164 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1 1462 498 302 38 107 chr5 114966095 114966118 -37571141 + MTE2a LTR MaLR 315 334 -45 1 1462 893 203 19 260 chr5 114966118 114966364 -37570895 - ORR1D2 LTR MaLR -2 368 152 1 1462 910 96 0 110 chr5 114966364 114966528 -37570731 + B1_Mus1 SINE Alu 2 147 -1 1 1462 893 203 19 260 chr5 114966528 114966766 -37570493 - ORR1D2 LTR MaLR -219 151 1 1 1462 498 302 38 107 chr5 114966766 114966823 -37570436 + MTE2a LTR MaLR 335 379 0 1 1462 1623 146 119 59 chr5 114966828 114966997 -37570262 - ORR1B1 LTR MaLR 0 394 231 1 1462 1110 55 0 20 chr5 114966997 114967146 -37570113 - B1_Mus1 SINE Alu -1 147 2 1 1462 1623 146 119 59 chr5 114967146 114967347 -37569912 - ORR1B1 LTR MaLR -164 230 2 1 1462 1648 128 0 130 chr5 114968099 114968430 -37568829 + ORR1A2 LTR MaLR 1 288 -39 1 1462 493 0 0 0 chr5 114968479 114968537 -37568722 + ORR1A2 LTR MaLR 269 326 0 1 1462 1673 117 37 95 chr5 114968876 114968929 -37568330 - ORR1A4 LTR MaLR 0 329 286 1 1462 1498 47 5 0 chr5 114968929 114969120 -37568139 - B2_Mm1a SINE B2 -1 192 1 1 1462 1673 117 37 95 chr5 114969120 114969415 -37567844 - ORR1A4 LTR MaLR -44 285 1 1 1462 979 122 126 16 chr5 114969460 114969643 -37567616 - ORR1B1 LTR MaLR -151 243 41 1 1462 182 237 0 0 chr5 114969941 114969979 -37567280 + L2b LINE L2 3323 3360 -15 1 1462 2286 160 28 94 chr5 114970022 114970079 -37567180 + RLTR24 LTR ERV1 1 58 -471 1 1462 923 93 0 80 chr5 114970079 114970230 -37567029 + B1_Mus1 SINE Alu 1 139 -9 1 1462 279 0 42 42 chr5 114970230 114970278 -37566981 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 1462 2286 160 28 94 chr5 114970278 114970619 -37566640 + RLTR24 LTR ERV1 59 363 -166 1 1462 1180 137 5 0 chr5 114970619 114970809 -37566450 + B2_Mm1t SINE B2 1 191 -2 1 1462 2286 160 28 94 chr5 114970809 114970973 -37566286 + RLTR24 LTR ERV1 364 527 -2 1 1462 821 123 110 6 chr5 114972410 114972573 -37564686 - B2_Mm2 SINE B2 -1 194 15 1 1462 671 90 0 10 chr5 114973285 114973386 -37563873 + (TTCC)n Simple_repeat Simple_repeat 2 101 0 1 1462 207 0 0 0 chr5 114973396 114973419 -37563840 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1462 610 246 8 15 chr5 114973421 114973553 -37563706 - ID_B1 SINE B4 -16 208 78 1 1462 335 261 138 66 chr5 114973591 114973743 -37563516 - RSINE1 SINE B4 0 165 3 1 1462 263 241 19 0 chr5 114973748 114973802 -37563457 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1462 768 163 11 22 chr5 114973803 114973985 -37563274 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1462 805 179 0 22 chr5 114974038 114974221 -37563038 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1462 563 199 22 11 chr5 114974202 114974380 -37562879 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1462 796 196 0 11 chr5 114974378 114974559 -37562700 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1462 330 209 24 237 chr5 114974590 114974797 -37562462 - RSINE1 SINE B4 0 165 3 1 1462 954 52 96 0 chr5 114976543 114976678 -37560581 + B1_Mus1 SINE Alu 1 148 0 1 1462 198 91 0 0 chr5 114976687 114976720 -37560539 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 1 1462 21 36 0 0 chr5 114976777 114976805 -37560454 + AT_rich Low_complexity Low_complexity 1 28 0 1 1462 323 286 13 0 chr5 114976826 114976903 -37560356 - RSINE1 SINE B4 -22 143 66 1 1462 459 78 0 0 chr5 114976913 114976977 -37560282 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1462 713 196 42 0 chr5 114976980 114977123 -37560136 - B3A SINE B2 -47 151 3 1 1462 2071 92 4 7 chr5 114977614 114977947 -37559312 - ORR1A2 LTR MaLR -2 344 12 1 1462 651 193 210 0 chr5 114978060 114978241 -37559018 + ID_B1 SINE B4 6 224 0 1 1462 206 264 19 0 chr5 114978241 114978278 -37558981 + polypurine Low_complexity Low_complexity 2 38 0 1 1462 378 0 0 0 chr5 114978278 114978320 -37558939 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 1 1462 206 264 19 0 chr5 114978320 114978335 -37558924 + polypurine Low_complexity Low_complexity 39 54 0 1 1462 256 161 75 0 chr5 114979244 114979337 -37557922 + CT-rich Low_complexity Low_complexity 1 100 0 1 1462 301 317 80 40 chr5 114979362 114979513 -37557746 - HAL1-3A_ME LINE L1 -420 2438 2282 1 1462 530 202 11 11 chr5 114979521 114979701 -37557558 + CT-rich Low_complexity Low_complexity 1 180 0 1 1462 194 205 12 35 chr5 114979705 114979791 -37557468 + C-rich Low_complexity Low_complexity 4 87 0 1 1462 3083 44 0 0 chr5 114979962 114980350 -37556909 - L1Md_F2 LINE L1 -12 6570 6183 1 1462 399 306 62 14 chr5 114980881 114981027 -37556232 + MLT1G1 LTR MaLR 166 318 -261 1 1462 1258 58 0 6 chr5 114981177 114981349 -37555910 + B2_Mm2 SINE B2 1 171 -24 1 1462 405 235 0 0 chr5 114981434 114981613 -37555646 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1462 186 250 0 0 chr5 114981630 114981734 -37555525 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 1462 588 200 0 0 chr5 114981746 114981926 -37555333 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1462 441 318 30 40 chr5 114982063 114982263 -37554996 - B4A SINE B4 -88 204 7 1 1462 349 280 100 6 chr5 114982351 114982506 -37554753 - MIR SINE MIR -59 203 34 1 1462 218 206 0 100 chr5 114983350 114983420 -37553839 + MIR SINE MIR 60 122 -86 1 1462 1583 36 0 0 chr5 114983711 114983903 -37553356 + B2_Mm1a SINE B2 2 193 0 1 1462 1095 56 14 0 chr5 114984076 114984218 -37553041 - B1_Mus1 SINE Alu 0 148 5 1 1462 270 263 91 138 chr5 114984461 114984696 -37552563 + MTEb LTR MaLR 100 297 -82 1 1462 212 271 34 0 chr5 114985327 114985386 -37551873 - MIRc SINE MIR -171 97 37 1 1462 755 263 84 0 chr5 114986053 114986243 -37551016 + ID_B1 SINE B4 10 215 -9 1 1462 338 262 90 39 chr5 114986343 114986498 -37550761 + RSINE1 SINE B4 3 165 0 1 1462 507 139 0 0 chr5 114986537 114986638 -37550621 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 1462 343 295 8 51 chr5 114986638 114986756 -37550503 + HAL1-3A_ME LINE L1 1975 2087 -771 1 1462 198 0 0 0 chr5 114987028 114987050 -37550209 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1462 476 285 80 0 chr5 114987079 114987121 -37550138 - RSINE1 SINE B4 -17 148 3 1 1462 712 54 0 0 chr5 114987121 114987214 -37550045 - B2_Mm2 SINE B2 -101 94 2 1 1462 214 121 0 0 chr5 114987216 114987249 -37550010 - MIRc SINE MIR -115 153 121 1 1462 254 291 11 34 chr5 114988349 114988438 -37548821 - PB1D10 SINE Alu -30 87 1 1 1462 207 182 22 22 chr5 114988553 114988598 -37548661 - MIR SINE MIR -55 153 109 1 1462 204 269 92 46 chr5 114990297 114990406 -37546853 - MIRb SINE MIR -38 230 117 1 1462 261 241 131 12 chr5 114990585 114990669 -37546590 - PB1D10 SINE Alu -18 99 6 1 1462 260 247 26 13 chr5 114990695 114990773 -37546486 - L1MC3 LINE L1 -38 7747 7669 1 1462 863 281 12 16 chr5 114990971 114991217 -37546042 - B4A SINE B4 0 292 48 1 1462 1188 277 83 34 chr5 114992110 114992548 -37544711 + RCHARR1 DNA MER1_type 47 507 -467 1 1462 1059 201 29 14 chr5 114992548 114992755 -37544504 - B3 SINE B2 -5 211 2 1 1462 985 193 12 131 chr5 114992812 114992965 -37544294 + URR1B DNA MER1_type 1 155 -70 1 1462 1086 57 35 0 chr5 114992965 114993106 -37544153 + B1_Mus2 SINE Alu 2 147 0 1 1462 985 193 12 131 chr5 114993106 114993196 -37544063 + URR1B DNA MER1_type 156 215 -10 1 1462 189 0 0 0 chr5 114993210 114993231 -37544028 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 1 1462 670 228 123 18 chr5 114993231 114993450 -37543809 + RCHARR1 DNA MER1_type 515 756 -218 1 1462 216 0 0 0 chr5 114993456 114993480 -37543779 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 1 1462 722 156 66 0 chr5 114993511 114993633 -37543626 - B3 SINE B2 -86 130 1 1 1462 239 269 144 0 chr5 114993636 114993740 -37543519 + RCHARR1 DNA MER1_type 734 852 -122 1 1462 922 179 56 10 chr5 114993758 114993955 -37543304 - B3 SINE B2 -7 209 4 1 1462 1245 196 111 82 chr5 114994256 114994661 -37542598 + MTD LTR MaLR 1 417 -2 1 1462 183 276 50 50 chr5 114994876 114994956 -37542303 - MIR SINE MIR -81 181 102 1 1462 578 114 0 20 chr5 114994959 114995057 -37542202 + (GGGA)n Simple_repeat Simple_repeat 2 97 0 1 1462 369 309 45 9 chr5 114995909 114996020 -37541239 - PB1D7 SINE Alu -3 117 3 1 1462 267 260 27 0 chr5 114996485 114996558 -37540701 + ID4 SINE ID 2 76 -7 1 1462 266 156 16 0 chr5 114996562 114996626 -37540633 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1462 346 154 31 0 chr5 114996629 114996694 -37540565 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1462 486 207 0 16 chr5 114996703 114996885 -37540374 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1462 307 268 12 0 chr5 114996851 114997019 -37540240 + (CATA)n Simple_repeat Simple_repeat 4 173 0 1 1462 229 200 55 41 chr5 114997025 114997098 -37540161 + MIRb SINE MIR 65 138 -130 1 1462 446 232 0 0 chr5 114997521 114997615 -37539644 + B3A SINE B2 1 94 -101 1 1462 1115 61 0 7 chr5 114997978 114998126 -37539133 + B1_Mus2 SINE Alu 1 147 0 1 1462 402 147 0 0 chr5 114998128 114998196 -37539063 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 1 1462 427 174 17 0 chr5 114998229 114998344 -37538915 + (TCCA)n Simple_repeat Simple_repeat 4 120 0 1 1462 211 258 0 0 chr5 114998883 114998949 -37538310 - L2b LINE L2 -291 3084 3019 1 1462 331 281 42 0 chr5 114999429 114999525 -37537734 - PB1D7 SINE Alu -12 108 9 1 1462 1113 68 0 7 chr5 114999624 114999772 -37537487 + B1_Mm SINE Alu 1 147 0 1 1462 267 103 0 0 chr5 114999773 114999812 -37537447 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1462 444 37 0 0 chr5 114999828 114999882 -37537377 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1462 626 226 0 7 chr5 115000250 115000539 -37536720 + (CA)n Simple_repeat Simple_repeat 1 286 0 1 1462 527 29 0 14 chr5 115000726 115000796 -37536463 + (TC)n Simple_repeat Simple_repeat 2 70 0 2 1462 261 0 0 0 chr5 115000796 115000824 -37536435 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1462 1083 133 21 48 chr5 115002197 115002386 -37534873 - B2_Mm2 SINE B2 -10 185 2 4 1462 525 224 8 8 chr5 115002675 115002792 -37534467 + PB1D10 SINE Alu 1 117 0 5 1462 224 273 26 52 chr5 115003464 115003610 -37533649 + MIR SINE MIR 6 146 -122 6 1462 394 267 148 16 chr5 115004356 115004539 -37532720 - MIRb SINE MIR -15 253 47 7 1462 205 286 0 0 chr5 115005143 115005192 -37532067 + MIR SINE MIR 104 152 -56 8 1462 1172 86 6 0 chr5 115005198 115005373 -37531886 + (TTGG)n Simple_repeat Simple_repeat 1 176 0 9 1462 589 266 57 6 chr5 115005373 115005526 -37531733 - ID_B1 SINE B4 -12 212 52 1 1462 644 249 36 4 chr5 115005532 115005710 -37531549 + B3A SINE B2 32 207 -9 1 1462 1020 122 13 20 chr5 115005710 115005861 -37531398 + B1_Mur4 SINE Alu 1 150 0 1 1462 199 291 19 43 chr5 115006674 115006801 -37530458 - L2c LINE L2 -10 3416 3296 1 1462 441 269 89 28 chr5 115006884 115006909 -37530350 - B2_Mm2 SINE B2 -3 192 168 1 1462 1173 89 0 0 chr5 115006909 115007055 -37530204 + B1_Mus1 SINE Alu 1 146 -2 1 1462 624 255 22 5 chr5 115007055 115007209 -37530050 - B3A SINE B2 -28 167 2 1 1462 390 178 61 32 chr5 115007250 115007379 -37529880 - PB1D10 SINE Alu 0 149 1 1 1462 203 246 48 127 chr5 115007468 115007594 -37529665 - MIR3 SINE MIR -90 118 3 1 1462 938 240 36 0 chr5 115007611 115007807 -37529452 - B3 SINE B2 -10 206 4 1 1462 299 284 116 0 chr5 115007905 115008000 -37529259 - MIR SINE MIR -71 137 32 1 1462 222 343 0 0 chr5 115008996 115009063 -37528196 - MIRc SINE MIR -92 176 110 2 1462 333 0 0 0 chr5 115009162 115009199 -37528060 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1462 242 241 103 46 chr5 115009208 115009295 -37527964 - MER117 DNA MER1_type -42 155 64 2 1462 301 305 45 45 chr5 115009323 115009457 -37527802 + MIR3 SINE MIR 42 175 -33 2 1462 268 309 89 48 chr5 115009724 115009752 -37527507 - MTE2a LTR MaLR -140 239 201 2 1462 405 0 0 0 chr5 115009752 115009797 -37527462 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1462 268 322 84 54 chr5 115009797 115009980 -37527279 - MTE2a LTR MaLR -179 200 27 2 1462 2995 72 36 0 chr5 115009981 115010367 -37526892 + MTB LTR MaLR 1 400 0 2 1462 26 0 0 0 chr5 115010466 115010492 -37526767 + GC_rich Low_complexity Low_complexity 1 26 0 2 1462 915 57 0 8 chr5 115011391 115011514 -37525745 - B1_Mus1 SINE Alu -16 132 11 2 1462 511 240 32 51 chr5 115011514 115011549 -37525710 - ID_B1 SINE B4 -16 208 54 2 1462 588 197 7 80 chr5 115011643 115011781 -37525478 + B1_Mur1 SINE Alu 22 149 0 3 1462 293 323 40 0 chr5 115011785 115011884 -37525375 + PB1D10 SINE Alu 15 117 0 3 1462 1717 16 5 0 chr5 115011888 115012080 -37525179 + B2_Mm1a SINE B2 1 193 0 3 1462 303 346 52 49 chr5 115012188 115012273 -37524986 - L2b LINE L2 -199 3188 3106 3 1462 5171 123 60 78 chr5 115012273 115012861 -37524398 - RMER17B LTR ERVK 0 958 345 3 1462 1186 75 0 0 chr5 115012861 115013008 -37524251 + B1_Mm SINE Alu 1 147 0 3 1462 5171 123 60 78 chr5 115013008 115013394 -37523865 - RMER17B LTR ERVK -614 344 1 3 1462 303 339 53 50 chr5 115013394 115013523 -37523736 - L2b LINE L2 -279 3108 2972 3 1462 2385 207 168 49 chr5 115013702 115014494 -37522765 + RMER19B LTR ERVK 1 886 -16 3 1462 1359 103 32 0 chr5 115014494 115014679 -37522580 + B2_Mm1t SINE B2 1 191 -2 3 1462 193 316 128 26 chr5 115015079 115015196 -37522063 + MIR SINE MIR 82 210 -52 3 1462 1170 64 0 0 chr5 115016183 115016323 -37520936 - B1_Mus1 SINE Alu -6 142 3 3 1462 198 321 0 131 chr5 115016361 115016483 -37520776 + MIR SINE MIR 44 149 -113 4 1462 401 285 11 7 chr5 115016495 115016611 -37520648 + PB1 SINE Alu 3 113 -36 4 1462 193 311 54 0 chr5 115016798 115016872 -37520387 + MIRb SINE MIR 127 204 -64 4 1462 288 70 0 0 chr5 115019390 115019433 -37517826 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 4 1462 381 22 0 0 chr5 115020102 115020148 -37517111 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1462 387 242 180 41 chr5 115021120 115021314 -37515945 + MIRb SINE MIR 40 260 -8 4 1462 22 0 0 0 chr5 115021826 115021848 -37515411 + GC_rich Low_complexity Low_complexity 1 22 0 4 1462 185 269 95 21 chr5 115022324 115022419 -37514840 + MIR3 SINE MIR 11 112 -96 4 1462 192 353 72 22 chr5 115022820 115022959 -37514300 + MIR SINE MIR 44 189 -73 4 1462 271 267 48 65 chr5 115024032 115024156 -37513103 - MER117 DNA MER1_type -37 160 39 4 1462 282 116 0 0 chr5 115026023 115026066 -37511193 + (TCCG)n Simple_repeat Simple_repeat 2 44 0 5 1462 184 254 3 25 chr5 115026839 115026909 -37510350 + MIR SINE MIR 98 172 -104 5 1462 480 313 6 0 chr5 115027174 115027353 -37509906 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 5 1462 327 276 0 0 chr5 115027489 115027659 -37509600 + (TG)n Simple_repeat Simple_repeat 2 171 0 5 1462 390 254 0 0 chr5 115027691 115027817 -37509442 + (TG)n Simple_repeat Simple_repeat 2 127 0 5 1462 287 351 29 0 chr5 115027925 115028069 -37509190 - MIRb SINE MIR -93 183 31 5 1462 203 105 53 0 chr5 115028364 115028402 -37508857 + (CCCCG)n Simple_repeat Simple_repeat 1 40 0 5 1462 879 163 7 26 chr5 115028823 115028974 -37508285 + B1_Mur3 SINE Alu 2 149 0 5 1462 966 64 27 281 chr5 115030455 115030715 -37506544 + B2_Mm2 SINE B2 2 195 0 5 1462 323 107 0 35 chr5 115030715 115030722 -37506537 + (GAAAA)n Simple_repeat Simple_repeat 5 11 0 5 1462 1222 61 0 0 chr5 115030722 115030869 -37506390 + B1_Mus2 SINE Alu 1 147 0 5 1462 323 107 0 35 chr5 115030869 115030919 -37506340 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 6 1462 379 310 7 65 chr5 115031143 115031281 -37505978 - ID_B1 SINE B4 -8 216 87 6 1462 225 363 100 6 chr5 115031988 115032122 -37505137 - MIR SINE MIR -93 169 25 6 1462 1355 49 16 0 chr5 115032223 115032407 -37504852 - B2_Mm2 SINE B2 -3 192 6 6 1462 212 355 140 0 chr5 115032962 115033069 -37504190 - MIR SINE MIR -79 183 62 6 1462 263 263 133 31 chr5 115033340 115033438 -37503821 + MIRb SINE MIR 35 142 -126 6 1462 251 219 104 52 chr5 115035164 115035241 -37502018 + MER33 DNA MER1_type 57 137 -187 6 1462 306 0 0 0 chr5 115035734 115035768 -37501491 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 6 1462 968 39 0 15 chr5 115037463 115037593 -37499666 - B1_Mus1 SINE Alu 0 148 21 6 1462 243 0 0 0 chr5 115037627 115037654 -37499605 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1462 769 191 189 32 chr5 115038509 115038822 -37498437 - MTD LTR MaLR -8 411 1 7 1462 294 308 2 113 chr5 115041537 115041711 -37495548 + MIR3 SINE MIR 4 155 -121 7 1462 180 288 17 17 chr5 115041774 115041834 -37495425 - L2a LINE L2 -341 3085 3026 7 1462 309 151 0 0 chr5 115042963 115043016 -37494243 + T-rich Low_complexity Low_complexity 1 53 0 7 1462 259 292 140 40 chr5 115044159 115044259 -37493000 + B1_Mm SINE Alu 1 110 -37 7 1462 1097 53 0 51 chr5 115045384 115045542 -37491717 - B2_Mm2 SINE B2 -44 151 2 7 1462 303 113 0 0 chr5 115045737 115045790 -37491469 + (CATA)n Simple_repeat Simple_repeat 2 54 0 7 1462 689 103 19 9 chr5 115045816 115045924 -37491335 + B1_Mur2 SINE Alu 30 138 -11 7 1462 270 261 41 52 chr5 115045997 115046013 -37491246 - BC1_Mm scRNA scRNA -54 98 41 7 1462 292 203 0 55 chr5 115046013 115046086 -37491173 - ID SINE ID -141 83 15 7 1462 654 244 107 73 chr5 115046141 115046318 -37490941 - ID_B1 SINE B4 -68 224 42 8 1462 285 277 18 106 chr5 115046538 115046651 -37490608 - RSINE1 SINE B4 0 165 63 8 1462 274 199 326 170 chr5 115047724 115047954 -37489305 - B4 SINE B4 -18 274 9 8 1462 222 339 42 63 chr5 115048111 115048300 -37488959 - B2_Mm2 SINE B2 0 195 11 8 1462 600 234 7 35 chr5 115048161 115048303 -37488956 - RSINE1 SINE B4 -19 146 9 8 1462 209 273 0 0 chr5 115048837 115048892 -37488367 + T-rich Low_complexity Low_complexity 2 56 0 8 1462 1135 48 6 75 chr5 115048894 115049053 -37488206 - B1_Mus1 SINE Alu 0 148 1 8 1462 278 262 110 90 chr5 115049155 115049310 -37487949 - B4A SINE B4 -3 289 132 8 1462 1933 117 17 3 chr5 115049897 115050198 -37487061 + ORR1A1 LTR MaLR 1 305 -41 8 1462 1161 75 0 20 chr5 115050198 115050347 -37486912 + B1_Mus2 SINE Alu 2 147 0 8 1462 505 229 0 8 chr5 115051092 115051220 -37486039 - B1F SINE Alu -21 128 5 9 1462 393 294 0 35 chr5 115051126 115051239 -37486020 - ID_B1 SINE B4 -48 176 68 9 1462 194 349 43 85 chr5 115051271 115051412 -37485847 + MIRb SINE MIR 20 154 -114 9 1462 279 0 0 0 chr5 115051629 115051660 -37485599 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1462 505 226 96 0 chr5 115052352 115052467 -37484792 + RSINE1 SINE B4 3 128 -37 9 1462 366 301 35 0 chr5 115052936 115053049 -37484210 - PB1D7 SINE Alu -3 117 1 9 1462 302 222 46 43 chr5 115053373 115053475 -37483784 + RSINE1 SINE B4 1 104 -188 9 1462 344 273 58 39 chr5 115053679 115053782 -37483477 + MT2B LTR ERVL 153 257 -344 9 1462 711 100 100 0 chr5 115053698 115053808 -37483451 + B1_Mur4 SINE Alu 11 131 -19 9 1462 354 260 220 0 chr5 115053958 115054108 -37483151 - L1M4 LINE L1 -1456 4690 4508 9 1462 1153 121 6 0 chr5 115054108 115054282 -37482977 - B2_Mm2 SINE B2 -19 176 2 1 1462 220 284 0 110 chr5 115054292 115054383 -37482876 - ID2 SINE ID -1 82 2 1 1462 225 83 0 0 chr5 115055177 115055213 -37482046 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1462 190 250 84 36 chr5 115055767 115055850 -37481409 - L2 LINE L2 -3285 134 48 1 1462 952 141 30 6 chr5 115056435 115056599 -37480660 + B2_Mm2 SINE B2 4 171 -24 1 1462 371 198 95 38 chr5 115057188 115057293 -37479966 + B1_Mus1 SINE Alu 9 119 -29 1 1462 254 326 11 33 chr5 115060000 115060092 -37477167 - MIRb SINE MIR -92 176 87 1 1462 434 290 152 20 chr5 115060435 115060632 -37476627 + ID_B1 SINE B4 2 224 0 1 1462 416 256 206 55 chr5 115062668 115062833 -37474426 + MER91B DNA Tip100 1 190 0 1 1462 369 0 0 0 chr5 115064550 115064591 -37472668 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1462 227 255 121 50 chr5 115065578 115065677 -37471582 - PB1D10 SINE Alu -9 108 3 1 1462 239 330 112 9 chr5 115065677 115065708 -37471551 - ID_B1 SINE B4 -130 94 52 1 1462 1589 31 5 16 chr5 115065969 115066163 -37471096 + B2_Mm1a SINE B2 2 193 0 1 1462 314 288 73 27 chr5 115066245 115066395 -37470864 + MIRc SINE MIR 26 182 -86 1 1462 1467 139 109 13 chr5 115066550 115066883 -37470376 - ORR1C2 LTR MaLR -1 383 5 1 1462 707 171 101 6 chr5 115067704 115067885 -37469374 + B3 SINE B2 1 194 -1 1 1462 23 0 0 0 chr5 115067929 115067952 -37469307 + AT_rich Low_complexity Low_complexity 1 23 0 1 1462 331 241 38 0 chr5 115068128 115068207 -37469052 + ID_B1 SINE B4 87 168 -56 1 1462 327 267 51 2 chr5 115068207 115068234 -37469025 + PB1D10 SINE Alu 6 124 -3 1 1462 236 270 120 33 chr5 115068348 115068440 -37468819 + MLT1K LTR MaLR 164 263 -332 1 1462 290 172 34 17 chr5 115068544 115068603 -37468656 + MLT1K LTR MaLR 459 518 -77 1 1462 360 288 163 14 chr5 115068791 115068932 -37468327 + RSINE1 SINE B4 4 165 0 1 1462 488 224 223 6 chr5 115068954 115069129 -37468130 + B3 SINE B2 2 214 -2 1 1462 243 226 161 0 chr5 115069360 115069422 -37467837 + tRNA-Ala-GCY_ tRNA tRNA 2 73 -2 1 1462 398 315 76 23 chr5 115069608 115069780 -37467479 - Tigger5 DNA MER2_type -2222 184 4 1 1462 288 179 0 0 chr5 115070005 115070061 -37467198 - ID_B1 SINE B4 0 224 169 1 1462 374 181 129 13 chr5 115070053 115070169 -37467090 - B1F2 SINE Alu -22 127 1 1 1462 1165 84 0 0 chr5 115070196 115070339 -37466920 + B1_Mus1 SINE Alu 1 143 -5 1 1462 242 362 0 7 chr5 115071888 115072041 -37465218 + C-rich Low_complexity Low_complexity 4 155 0 1 1462 201 306 86 0 chr5 115072904 115073015 -37464244 - MIRb SINE MIR -93 175 52 1 1462 236 30 30 0 chr5 115073024 115073057 -37464202 + (TGGGGG)n Simple_repeat Simple_repeat 2 35 0 1 1462 1251 54 0 0 chr5 115073117 115073265 -37463994 + B1_Mus1 SINE Alu 1 148 0 1 1462 242 68 0 43 chr5 115073268 115073314 -37463945 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1 1462 691 258 33 12 chr5 115073995 115074226 -37463033 - L1MB5 LINE L1 -230 5954 5725 1 1462 289 274 119 42 chr5 115074851 115074969 -37462290 - MIR SINE MIR -91 171 45 1 1462 465 211 174 9 chr5 115075229 115075344 -37461915 - ID_B1 SINE B4 -2 222 89 1 1462 235 200 81 54 chr5 115076020 115076094 -37461165 - B4A SINE B4 -216 76 1 1 1462 955 116 0 35 chr5 115076334 115076477 -37460782 - B1_Mur4 SINE Alu -8 142 5 1 1462 298 275 35 44 chr5 115077263 115077377 -37459882 + MER20 DNA MER1_type 44 156 -63 1 1462 339 344 35 35 chr5 115077664 115077833 -37459426 + MER117 DNA MER1_type 6 174 -23 1 1462 391 377 12 12 chr5 115077893 115078062 -37459197 + MER117 DNA MER1_type 18 186 -11 1 1462 580 257 64 26 chr5 115078204 115078360 -37458899 - RSINE1 SINE B4 0 165 4 1 1462 872 160 0 27 chr5 115079170 115079318 -37457941 - B1_Mur2 SINE Alu -5 144 1 1 1462 227 222 18 53 chr5 115079328 115079385 -37457874 + Tigger14a DNA MER2_type 102 156 -168 1 1462 694 249 93 6 chr5 115079387 115079569 -37457690 + B3A SINE B2 1 198 0 1 1462 204 216 0 0 chr5 115079573 115079610 -37457649 + GA-rich Low_complexity Low_complexity 2 38 0 1 1462 338 317 83 0 chr5 115079654 115079799 -37457460 - MER117 DNA MER1_type -6 191 35 1 1462 522 214 24 6 chr5 115080205 115080374 -37456885 + GA-rich Low_complexity Low_complexity 5 176 0 1 182 723 247 6 30 chr5 115081129 115081296 -37455963 + RSINE1 SINE B4 3 165 0 1 1463 387 248 129 0 chr5 115081313 115081414 -37455845 + PB1D10 SINE Alu 1 114 -3 1 1463 518 265 136 0 chr5 115081464 115081626 -37455633 + B3 SINE B2 25 208 -8 1 1463 1016 194 55 25 chr5 115081639 115081840 -37455419 + B3 SINE B2 5 211 -5 1 1463 531 125 0 188 chr5 115081875 115081978 -37455281 + PB1D9 SINE Alu 9 96 -24 1 1463 486 0 0 0 chr5 115081978 115082032 -37455227 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1463 950 93 70 0 chr5 115082032 115082161 -37455098 - B1_Mus1 SINE Alu -9 139 2 1 1463 531 125 0 188 chr5 115082161 115082194 -37455065 + PB1D9 SINE Alu 97 119 -1 1 1463 447 195 0 0 chr5 115082194 115082276 -37454983 + ID2 SINE ID 1 82 -1 1 1463 280 268 84 12 chr5 115082891 115082974 -37454285 - MIR SINE MIR -123 139 51 1 1463 319 179 49 41 chr5 115083376 115083498 -37453761 + (TAGA)n Simple_repeat Simple_repeat 3 125 0 1 1463 198 0 0 0 chr5 115083498 115083520 -37453739 + (CAGA)n Simple_repeat Simple_repeat 3 24 0 1 1463 183 42 0 0 chr5 115083629 115083653 -37453606 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1463 1146 66 0 0 chr5 115083654 115083790 -37453469 - B1_Mus1 SINE Alu -12 136 1 1 1463 278 157 28 34 chr5 115083791 115083863 -37453396 - PB1D10 SINE Alu -43 74 3 1 1463 424 306 174 5 chr5 115084065 115084249 -37453010 + MER20 DNA MER1_type 4 218 -1 1 1463 182 232 26 92 chr5 115085190 115085266 -37451993 - MIRm SINE MIR -100 176 106 1 1463 273 27 0 0 chr5 115085746 115085783 -37451476 - B2_Mm2 SINE B2 -158 37 1 1 1463 255 61 0 0 chr5 115086240 115086273 -37450986 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 1 1463 515 217 0 9 chr5 115086708 115086815 -37450444 - PB1D10 SINE Alu -5 112 7 1 1463 817 287 15 19 chr5 115086833 115087039 -37450220 - B3 SINE B2 -3 213 9 1 1463 1042 127 0 0 chr5 115087066 115087224 -37450035 - B2_Mm2 SINE B2 -37 158 1 1 1463 946 144 14 7 chr5 115087389 115087536 -37449723 - B1_Mur4 SINE Alu -2 148 1 1 1463 889 272 10 95 chr5 115087575 115087871 -37449388 - B4A SINE B4 -6 286 16 1 1463 635 225 6 0 chr5 115090534 115090703 -37446556 + (CCCA)n Simple_repeat Simple_repeat 2 171 0 1 1463 591 332 50 0 chr5 115090825 115091024 -37446235 - ID_B1 SINE B4 -1 223 15 1 1463 1033 84 77 0 chr5 115091501 115091656 -37445603 + B2_Mm2 SINE B2 1 167 -28 1 1463 453 103 0 0 chr5 115091674 115091742 -37445517 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1463 185 208 36 14 chr5 115092129 115092183 -37445076 + MIR SINE MIR 112 174 -94 1 1463 485 231 19 0 chr5 115093205 115093313 -37443946 + PB1D10 SINE Alu 7 116 -1 1 1463 223 47 44 44 chr5 115093322 115093367 -37443892 + (CAGAGA)n Simple_repeat Simple_repeat 2 46 0 1 1463 328 203 41 129 chr5 115093629 115093672 -37443587 + MT2B LTR ERVL 124 153 -448 1 1463 677 177 0 0 chr5 115093672 115093785 -37443474 + B1_Mur4 SINE Alu 2 114 -36 1 1463 597 28 0 0 chr5 115093793 115093864 -37443395 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1463 984 214 21 11 chr5 115093930 115094461 -37442798 + (TGGA)n Simple_repeat Simple_repeat 1 536 0 1 1463 290 243 110 2 chr5 115095253 115095377 -37441882 + MIRb SINE MIR 23 162 -106 1 1463 191 281 0 50 chr5 115095757 115095817 -37441442 - MIRm SINE MIR -117 159 103 1 1463 324 341 14 21 chr5 115096164 115096341 -37440918 + MIRc SINE MIR 20 200 -76 1 1463 220 310 27 27 chr5 115096344 115096417 -37440842 + MIRc SINE MIR 113 185 -83 1 1463 258 56 0 0 chr5 115096912 115096948 -37440311 + (TCTG)n Simple_repeat Simple_repeat 2 37 0 1 1463 477 90 0 0 chr5 115096950 115097017 -37440242 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1463 373 272 83 39 chr5 115097187 115097339 -37439920 - MIRc SINE MIR -85 183 23 1 1463 440 296 9 19 chr5 115098175 115098294 -37438965 + ID_B1 SINE B4 69 194 -98 1 1463 226 360 0 22 chr5 115098213 115098304 -37438955 - YREP_Mm Unknown Unknown -1518 294 206 1 1463 279 318 18 0 chr5 115098325 115098435 -37438824 + PB1D10 SINE Alu 1 112 -5 1 1463 221 312 53 21 chr5 115098519 115098614 -37438645 - L2a LINE L2 -2 3424 3327 1 1463 480 222 8 64 chr5 115099438 115099563 -37437696 + B1_Mur1 SINE Alu 23 140 -9 1 1463 951 213 3 12 chr5 115099567 115099764 -37437495 + B3 SINE B2 12 210 -6 1 1463 815 297 4 40 chr5 115100502 115100730 -37436529 - ID_B1 SINE B4 -2 222 3 1 1463 254 304 47 38 chr5 115102012 115102118 -37435141 + MIR3 SINE MIR 100 206 -2 1 1463 346 250 113 10 chr5 115102149 115102246 -37435013 + PB1D10 SINE Alu 5 111 -6 1 1463 242 314 71 0 chr5 115102249 115102319 -37434940 + ID4 SINE ID 6 80 -3 1 1463 368 240 77 0 chr5 115102320 115102424 -37434835 + MIR SINE MIR 150 261 -1 1 1463 207 308 109 11 chr5 115102804 115102896 -37434363 - MIRb SINE MIR -53 215 115 1 1463 206 281 42 68 chr5 115103389 115103510 -37433749 - MIRb SINE MIR -39 229 115 1 1463 270 246 46 69 chr5 115104046 115104177 -37433082 - MIR3 SINE MIR -27 181 54 2 1463 214 333 52 0 chr5 115104329 115104456 -37432803 - MIR SINE MIR -76 200 60 2 1463 839 160 263 0 chr5 115104586 115104761 -37432498 + URR1A DNA MER1_type 3 223 -3 2 1463 211 269 39 76 chr5 115105408 115105570 -37431689 - MIRb SINE MIR -17 191 41 2 1463 1141 84 0 0 chr5 115107105 115107247 -37430012 + B1_Mus1 SINE Alu 2 143 -5 2 1463 258 95 0 0 chr5 115107250 115107292 -37429967 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2 1463 218 246 74 24 chr5 115107399 115107517 -37429742 - MIRm SINE MIR -116 152 17 2 1463 29 47 0 0 chr5 115108417 115108460 -37428799 + GC_rich Low_complexity Low_complexity 1 43 0 2 1463 194 255 94 88 chr5 115109394 115109490 -37427769 - MIRb SINE MIR -117 151 50 2 1463 641 264 207 29 chr5 115109627 115109869 -37427390 + B4 SINE B4 3 287 -5 2 1463 219 240 0 0 chr5 115110117 115110167 -37427092 + ID4 SINE ID 23 72 -11 2 1463 225 139 0 0 chr5 115110203 115110246 -37427013 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1463 1084 126 56 33 chr5 115110296 115110476 -37426783 + B2_Mm2 SINE B2 1 184 -11 2 1463 270 333 57 61 chr5 115111185 115111482 -37425777 + L1MB7 LINE L1 5569 5864 -314 2 1463 22 0 0 0 chr5 115111491 115111513 -37425746 + GC_rich Low_complexity Low_complexity 1 22 0 2 1463 2033 131 267 28 chr5 115111523 115111883 -37425376 + RMER15 LTR ERVL 1 430 -145 2 1463 1529 73 0 5 chr5 115111883 115112075 -37425184 + B2_Mm2 SINE B2 1 191 -4 2 1463 2029 131 267 28 chr5 115112075 115112178 -37425081 + RMER15 LTR ERVL 431 575 0 2 1463 432 250 144 8 chr5 115112178 115112303 -37424956 + RSINE1 SINE B4 22 163 -2 2 1463 256 267 117 55 chr5 115112321 115112512 -37424747 + L1MB7 LINE L1 5873 6075 -99 2 1463 272 320 76 52 chr5 115112616 115112827 -37424432 + MIRb SINE MIR 37 252 -16 2 1463 194 209 23 0 chr5 115113076 115113119 -37424140 - MIRb SINE MIR -92 176 133 2 1463 923 197 17 11 chr5 115113344 115113524 -37423735 + B3 SINE B2 2 182 -34 2 1463 279 0 0 0 chr5 115113732 115113763 -37423496 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1463 423 73 0 5 chr5 115113778 115113843 -37423416 - B2_Mm2 SINE B2 -107 109 47 2 1463 1399 83 0 6 chr5 115113872 115114053 -37423206 - B2_Mm2 SINE B2 -14 181 2 2 1463 580 212 159 0 chr5 115114255 115114406 -37422853 - ID_B1 SINE B4 -1 223 49 2 1463 23 0 0 0 chr5 115114509 115114532 -37422727 + AT_rich Low_complexity Low_complexity 1 23 0 2 1463 387 0 0 0 chr5 115114585 115114628 -37422631 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1463 577 243 116 66 chr5 115115279 115115477 -37421782 - ID_B1 SINE B4 -12 212 5 2 1463 181 308 12 82 chr5 115115931 115116016 -37421243 + L2b LINE L2 3097 3175 -200 2 1463 248 309 29 79 chr5 115116321 115116527 -37420732 - MIRm SINE MIR -15 247 50 2 1463 1120 48 167 6 chr5 115116527 115116695 -37420564 + B2_Mm2 SINE B2 1 195 0 2 1463 539 200 116 8 chr5 115116730 115116851 -37420408 - B1_Mur2 SINE Alu -1 148 15 2 1463 21 0 0 0 chr5 115117049 115117070 -37420189 + AT_rich Low_complexity Low_complexity 1 21 0 2 1463 1097 77 21 0 chr5 115117082 115117225 -37420034 - B1_Mus1 SINE Alu -1 147 2 2 1463 24 0 0 0 chr5 115117225 115117249 -37420010 + AT_rich Low_complexity Low_complexity 1 24 0 2 1463 605 254 14 0 chr5 115117249 115117391 -37419868 - B3 SINE B2 -9 207 64 2 1463 509 201 18 0 chr5 115118759 115118861 -37418398 - PB1D10 SINE Alu -3 124 10 2 1463 288 305 79 58 chr5 115118999 115119138 -37418121 - MTD LTR MaLR 0 419 278 2 1463 482 269 6 48 chr5 115119155 115119323 -37417936 - MTD LTR MaLR -213 206 46 2 1463 369 92 40 0 chr5 115119800 115119876 -37417383 + (GA)n Simple_repeat Simple_repeat 2 80 0 2 1463 922 70 131 8 chr5 115120838 115120968 -37416291 + B1_Mus1 SINE Alu 2 147 -1 2 1463 1243 69 40 6 chr5 115121029 115121203 -37416056 + B2_Mm2 SINE B2 2 181 -14 2 1463 292 170 0 0 chr5 115121272 115121325 -37415934 + B2_Mm2 SINE B2 47 99 -96 2 1463 21 0 0 0 chr5 115121349 115121370 -37415889 + AT_rich Low_complexity Low_complexity 1 21 0 2 1463 230 87 43 21 chr5 115121389 115121436 -37415823 + B2_Mm2 SINE B2 130 177 -18 2 1463 207 0 0 0 chr5 115121487 115121510 -37415749 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 2 1463 21 0 0 0 chr5 115121558 115121579 -37415680 + AT_rich Low_complexity Low_complexity 1 21 0 2 1463 21 0 0 0 chr5 115121627 115121648 -37415611 + AT_rich Low_complexity Low_complexity 1 21 0 2 1463 21 0 0 0 chr5 115121695 115121716 -37415543 + AT_rich Low_complexity Low_complexity 1 21 0 2 1463 21 0 0 0 chr5 115121763 115121784 -37415475 + AT_rich Low_complexity Low_complexity 1 21 0 2 1463 230 87 43 21 chr5 115121804 115121851 -37415408 + B2_Mm2 SINE B2 130 177 -18 2 1463 21 0 0 0 chr5 115121901 115121922 -37415337 + AT_rich Low_complexity Low_complexity 1 21 0 2 1463 230 87 43 21 chr5 115121942 115121989 -37415270 + B2_Mm2 SINE B2 130 177 -18 2 1463 230 87 43 21 chr5 115122011 115122058 -37415201 + B2_Mm2 SINE B2 130 177 -18 2 1463 230 87 43 21 chr5 115122080 115122127 -37415132 + B2_Mm2 SINE B2 130 177 -18 2 1463 230 87 43 21 chr5 115122149 115122196 -37415063 + B2_Mm2 SINE B2 130 177 -18 2 1463 230 87 43 21 chr5 115122218 115122265 -37414994 + B2_Mm2 SINE B2 130 177 -18 2 1463 230 87 43 21 chr5 115122287 115122334 -37414925 + B2_Mm2 SINE B2 130 177 -18 2 1463 230 87 43 21 chr5 115122356 115122403 -37414856 + B2_Mm2 SINE B2 130 177 -18 2 1463 243 65 43 21 chr5 115122425 115122472 -37414787 + B2_Mm2 SINE B2 130 177 -18 2 1463 230 87 43 21 chr5 115122555 115122602 -37414657 + B2_Mm2 SINE B2 130 177 -18 2 1463 230 87 43 21 chr5 115122624 115122671 -37414588 + B2_Mm2 SINE B2 130 177 -18 2 1463 207 0 0 0 chr5 115122723 115122746 -37414513 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 2 1463 495 146 0 0 chr5 115122761 115122843 -37414416 + B1_Mur1 SINE Alu 68 149 0 2 1463 223 282 14 27 chr5 115123179 115123252 -37414007 - PB1 SINE Alu -3 124 53 2 1463 227 242 0 16 chr5 115124714 115124777 -37412482 + ORR1E LTR MaLR 72 133 -226 2 1463 990 137 7 0 chr5 115125719 115125858 -37411401 + B1_Mur3 SINE Alu 1 140 -9 2 1463 345 24 0 0 chr5 115125858 115125900 -37411359 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 2 1463 317 253 21 32 chr5 115126804 115126898 -37410361 + MIRb SINE MIR 41 140 -128 2 1463 246 128 0 0 chr5 115126898 115126937 -37410322 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1463 701 273 7 0 chr5 115126942 115127096 -37410163 - B3A SINE B2 -42 156 2 2 1463 271 239 215 7 chr5 115127124 115127259 -37410000 - B4A SINE B4 -123 169 7 2 1463 741 207 24 30 chr5 115127281 115127450 -37409809 - B2_Mm2 SINE B2 -27 168 1 2 1463 459 204 34 34 chr5 115128898 115129015 -37408244 + PB1D10 SINE Alu 1 117 0 2 1463 233 281 47 0 chr5 115129266 115129330 -37407929 - PB1D10 SINE Alu -49 68 2 2 1463 341 224 98 39 chr5 115130239 115130341 -37406918 + PB1D10 SINE Alu 5 112 -5 2 1463 240 238 115 29 chr5 115131507 115131611 -37405648 + B3A SINE B2 1 113 -82 2 1463 187 304 18 0 chr5 115131930 115131986 -37405273 - L3b LINE CR1 -249 233 177 2 1463 310 336 39 23 chr5 115132033 115132161 -37405098 + ID_B1 SINE B4 32 161 -63 2 1463 282 237 17 0 chr5 115132156 115132215 -37405044 - B4 SINE B4 -184 108 49 2 1463 714 93 19 0 chr5 115132312 115132420 -37404839 - B1_Mus2 SINE Alu 0 147 38 2 1463 502 246 64 0 chr5 115132413 115132523 -37404736 - ID_B1 SINE B4 -9 215 99 2 1463 599 189 18 159 chr5 115133148 115133318 -37403941 + B1_Mur1 SINE Alu 1 146 -3 2 1463 200 125 0 48 chr5 115133319 115133361 -37403898 + (CAGA)n Simple_repeat Simple_repeat 4 43 0 2 1463 265 344 25 74 chr5 115133363 115133526 -37403733 + MIRc SINE MIR 37 191 -71 2 1463 22 0 0 0 chr5 115134856 115134878 -37402381 + GC_rich Low_complexity Low_complexity 1 22 0 2 1463 610 112 172 0 chr5 115135372 115135488 -37401771 + B1_Mus1 SINE Alu 1 136 -12 2 1463 400 198 25 109 chr5 115135747 115135866 -37401393 + MT2B LTR ERVL 156 264 -337 2 1463 1047 23 0 0 chr5 115135767 115135898 -37401361 + B1_Mus1 SINE Alu 15 145 -3 2 1463 180 0 0 0 chr5 115135898 115135918 -37401341 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2 1463 258 289 46 37 chr5 115136008 115136116 -37401143 + MIR SINE MIR 39 147 -115 2 1463 841 27 0 26 chr5 115136469 115136584 -37400675 + B1_Mus1 SINE Alu 37 148 0 2 1463 21 0 0 0 chr5 115136584 115136605 -37400654 + AT_rich Low_complexity Low_complexity 1 21 0 2 1463 261 223 94 20 chr5 115136679 115136788 -37400471 + B1F SINE Alu 1 117 0 2 1463 2030 121 12 5 chr5 115137786 115138155 -37399104 - ORR1A2 LTR MaLR -8 386 1 2 1463 502 206 171 23 chr5 115138169 115138298 -37398961 + B1F SINE Alu 2 149 0 2 1463 254 68 45 0 chr5 115138310 115138354 -37398905 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1463 245 274 41 0 chr5 115138402 115138475 -37398784 + ID_B1 SINE B4 141 216 -8 2 1463 280 206 71 29 chr5 115138413 115138483 -37398776 + B1F SINE Alu 75 147 -2 2 1463 458 323 65 0 chr5 115139413 115139568 -37397691 + RSINE1 SINE B4 1 165 0 2 1463 1159 49 7 0 chr5 115141584 115141727 -37395532 + B1_Mus1 SINE Alu 5 148 0 2 1463 702 113 0 0 chr5 115141731 115141837 -37395422 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 2 1463 228 276 0 0 chr5 115142369 115142474 -37394785 + (TCCA)n Simple_repeat Simple_repeat 2 106 0 3 1463 1177 82 0 0 chr5 115142557 115142704 -37394555 - B1_Mus2 SINE Alu 0 147 1 3 1463 230 347 70 55 chr5 115143039 115143167 -37394092 + RMER10B LTR ERVL 269 398 0 3 1463 379 241 24 0 chr5 115143167 115143247 -37394012 - B1F SINE Alu -26 123 42 3 1463 182 105 26 0 chr5 115143268 115143306 -37393953 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 1463 341 279 156 30 chr5 115143491 115143754 -37393505 - L1MC4 LINE L1 -369 7673 7378 3 1463 455 252 0 0 chr5 115143756 115143855 -37393404 - PB1D9 SINE Alu -11 109 11 3 1463 654 276 149 36 chr5 115144018 115144266 -37392993 - L1MC4 LINE L1 -1045 6997 6722 3 1463 748 193 0 7 chr5 115144681 115144822 -37392437 + B1_Mur2 SINE Alu 3 142 -7 3 1463 447 106 0 0 chr5 115144822 115144888 -37392371 + (GGA)n Simple_repeat Simple_repeat 1 66 0 3 1463 411 21 0 0 chr5 115144889 115144937 -37392322 + (GAAA)n Simple_repeat Simple_repeat 3 50 0 3 1463 258 179 0 0 chr5 115145350 115145406 -37391853 + (ATG)n Simple_repeat Simple_repeat 2 57 0 3 1463 457 316 133 75 chr5 115145498 115145863 -37391396 - MLT1D LTR MaLR -7 498 102 3 1463 895 237 61 10 chr5 115145891 115146087 -37391172 + B3 SINE B2 11 216 0 3 1463 1027 72 58 0 chr5 115146167 115146306 -37390953 - B1_Mus1 SINE Alu 0 148 2 3 1463 1436 87 22 0 chr5 115146425 115146610 -37390649 - B2_Mm2 SINE B2 -6 189 1 3 1463 502 210 83 16 chr5 115146705 115146826 -37390433 - RSINE1 SINE B4 -35 130 2 3 1463 470 316 112 88 chr5 115146826 115146918 -37390341 + MTE2a LTR MaLR 10 88 -331 3 1463 1176 68 0 0 chr5 115146918 115147064 -37390195 - B1_Mus2 SINE Alu 0 147 2 3 1463 901 235 132 49 chr5 115147064 115147371 -37389888 + MTE2a LTR MaLR 70 402 -17 3 1463 420 267 167 0 chr5 115147639 115147759 -37389500 - B1F1 SINE Alu -9 140 1 3 1463 832 254 224 0 chr5 115147872 115148175 -37389084 + MTEb LTR MaLR 1 371 -8 3 1463 529 217 9 5 chr5 115148725 115148956 -37388303 + (TG)n Simple_repeat Simple_repeat 1 232 0 3 1463 342 0 0 0 chr5 115148983 115149021 -37388238 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1463 545 360 54 102 chr5 115149083 115149484 -37387775 - MER54A LTR ERVL -135 766 374 3 1463 2059 121 117 66 chr5 115149484 115149936 -37387323 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1463 545 360 54 102 chr5 115149936 115150299 -37386960 - MER54A LTR ERVL -528 373 39 3 1463 1207 54 0 0 chr5 115150420 115150567 -37386692 + B1_Mus1 SINE Alu 2 148 0 3 1463 198 91 0 0 chr5 115150567 115150600 -37386659 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1463 386 222 97 79 chr5 115150624 115150739 -37386520 + B1F SINE Alu 21 137 -12 3 1463 516 56 0 0 chr5 115150739 115150811 -37386448 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 3 1463 1001 260 55 7 chr5 115150812 115151083 -37386176 + B4A SINE B4 1 284 -8 3 1463 280 245 14 20 chr5 115151155 115151301 -37385958 + (TA)n Simple_repeat Simple_repeat 1 145 0 3 1463 21 0 0 0 chr5 115151341 115151362 -37385897 + AT_rich Low_complexity Low_complexity 1 21 0 3 1463 220 127 18 18 chr5 115151362 115151418 -37385841 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 3 1463 777 219 0 0 chr5 115151420 115151566 -37385693 + RMER12B LTR ERVK 1 146 -1258 3 1463 1537 62 0 15 chr5 115151566 115151762 -37385497 - B2_Mm2 SINE B2 -1 194 2 3 1463 727 108 87 7 chr5 115151763 115151912 -37385347 + RMER12 LTR ERVK 574 734 -588 3 1463 1354 108 5 0 chr5 115151939 115152125 -37385134 + B2_Mm2 SINE B2 2 188 -7 3 1463 21 0 0 0 chr5 115152125 115152146 -37385113 + AT_rich Low_complexity Low_complexity 1 21 0 3 1463 682 226 38 11 chr5 115152160 115152417 -37384842 + RMER12 LTR ERVK 701 887 -435 3 1463 243 0 0 0 chr5 115152417 115152444 -37384815 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1463 464 308 123 46 chr5 115152444 115152555 -37384704 + RMER12 LTR ERVK 1306 1416 -156 3 1463 230 364 33 17 chr5 115152824 115152944 -37384315 - MLT1L LTR MaLR -354 256 135 3 1463 396 250 25 33 chr5 115153397 115153517 -37383742 + MLT1D LTR MaLR 3 121 -384 3 1463 453 257 61 0 chr5 115153663 115153784 -37383475 - PB1D10 SINE Alu -12 137 7 3 1463 310 299 51 48 chr5 115154521 115154749 -37382510 - B4 SINE B4 -11 281 81 3 1463 263 132 0 36 chr5 115154749 115154766 -37382493 + polypyrimidine Low_complexity Low_complexity 39 54 0 3 1463 2988 63 5 112 chr5 115154766 115154963 -37382296 + MTB LTR MaLR 1 196 -204 3 1463 1202 55 7 0 chr5 115154963 115155108 -37382151 + B1_Mus2 SINE Alu 2 147 0 3 1463 2988 63 5 112 chr5 115155108 115155358 -37381901 + MTB LTR MaLR 197 400 0 3 1463 263 132 0 36 chr5 115155358 115155395 -37381864 + polypyrimidine Low_complexity Low_complexity 2 38 0 3 1463 226 169 121 0 chr5 115155464 115155519 -37381740 - B1F SINE Alu 0 149 57 3 1463 217 331 60 53 chr5 115155570 115155720 -37381539 + MIRb SINE MIR 22 172 -96 3 1463 277 290 9 78 chr5 115155837 115155953 -37381306 + PB1D10 SINE Alu 1 108 -9 3 1463 702 154 0 0 chr5 115155953 115156083 -37381176 + GA-rich Low_complexity Low_complexity 1 130 0 3 1463 192 259 57 30 chr5 115156110 115156240 -37381019 - MIRc SINE MIR -84 184 44 3 1463 1183 50 0 0 chr5 115156627 115156767 -37380492 + B1_Mus1 SINE Alu 1 140 -8 3 1463 198 0 0 0 chr5 115156769 115156791 -37380468 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 3 1463 1244 55 0 0 chr5 115157034 115157180 -37380079 + B1_Mm SINE Alu 1 146 -1 3 1463 1448 33 25 71 chr5 115157223 115157419 -37379840 - B2_Mm1a SINE B2 -6 187 1 3 1463 211 182 0 83 chr5 115157580 115157640 -37379619 + C-rich Low_complexity Low_complexity 4 58 0 3 1463 447 258 0 24 chr5 115158097 115158220 -37379039 - PB1 SINE Alu -7 120 1 3 1463 208 0 0 59 chr5 115158985 115159019 -37378240 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 3 1463 1259 41 0 0 chr5 115159023 115159169 -37378090 - B1_Mus2 SINE Alu 0 147 2 3 1463 252 252 87 70 chr5 115159687 115159802 -37377457 - MTEa LTR MaLR -55 324 208 3 1463 701 183 35 0 chr5 115159933 115160075 -37377184 - B1_Mur1 SINE Alu 0 149 3 3 1463 310 206 24 144 chr5 115159966 115160091 -37377168 - MT2B LTR ERVL -337 264 155 3 1463 754 275 0 6 chr5 115160197 115160380 -37376879 - MT2A LTR ERVL -88 445 264 3 1463 754 267 34 62 chr5 115160398 115160750 -37376509 - RLTR15 LTR ERVK -17 342 1 3 1463 309 261 43 11 chr5 115160760 115160853 -37376406 - MT2A LTR ERVL -291 242 147 3 1463 566 226 17 0 chr5 115162080 115162195 -37375064 + RSINE1 SINE B4 8 124 -41 3 1463 296 48 24 0 chr5 115162195 115162237 -37375022 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1463 720 112 0 9 chr5 115162319 115162427 -37374832 - B1_Mur2 SINE Alu -3 146 40 3 1463 297 167 0 0 chr5 115162467 115162521 -37374738 + C-rich Low_complexity Low_complexity 4 57 0 3 1463 249 168 72 0 chr5 115162521 115162598 -37374661 + B1_Mus1 SINE Alu 28 117 -32 3 1463 205 51 0 49 chr5 115162776 115162817 -37374442 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1463 1157 68 7 0 chr5 115162821 115162968 -37374291 - B1_Mus1 SINE Alu 0 148 1 3 1463 330 305 66 111 chr5 115163023 115163311 -37373948 - B4 SINE B4 -16 276 2 3 1463 405 316 122 11 chr5 115163714 115163903 -37373356 - B4 SINE B4 -3 289 80 3 1463 1111 197 5 29 chr5 115163931 115164140 -37373119 - B3 SINE B2 -10 206 3 3 1463 330 281 49 87 chr5 115164151 115164171 -37373088 - B2_Mm2 SINE B2 -19 176 153 3 1463 397 97 0 27 chr5 115164171 115164245 -37373014 + (TG)n Simple_repeat Simple_repeat 1 72 0 3 1463 469 281 49 87 chr5 115164245 115164407 -37372852 - B3A SINE B2 -36 162 1 3 1463 226 209 72 29 chr5 115165428 115165497 -37371762 + B1F SINE Alu 36 107 -42 3 1463 1284 134 0 5 chr5 115166108 115166303 -37370956 - B2_Mm2 SINE B2 -1 194 1 3 1463 927 171 0 0 chr5 115166311 115166457 -37370802 - B1_Mur1 SINE Alu -3 146 1 3 1463 404 187 3 37 chr5 115166502 115166594 -37370665 + B3A SINE B2 1 91 -125 3 1463 815 45 0 18 chr5 115167127 115167239 -37370020 - B1_Mm SINE Alu -8 139 30 3 1463 717 286 31 51 chr5 115169127 115169415 -37367844 - MTD LTR MaLR -64 355 1 3 1463 195 42 0 0 chr5 115170173 115170197 -37367062 + (GGA)n Simple_repeat Simple_repeat 3 26 0 3 1463 256 333 73 0 chr5 115173141 115173237 -37364022 + RSINE1 SINE B4 9 111 -54 3 1463 315 0 0 0 chr5 115173265 115173300 -37363959 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1463 2017 138 137 26 chr5 115173300 115173711 -37363548 - RMER4A LTR ERVK -4 462 4 3 1463 1654 146 60 4 chr5 115174157 115174438 -37362821 + MTC LTR MaLR 125 421 0 3 1463 1436 110 15 143 chr5 115174437 115174707 -37362552 + MTC-int LTR MaLR 2 242 -1016 3 1463 1230 48 7 0 chr5 115174707 115174852 -37362407 + B1_Mus2 SINE Alu 1 146 -1 3 1463 1436 110 15 143 chr5 115174852 115174910 -37362349 + MTC-int LTR MaLR 243 288 -970 3 1463 825 118 0 0 chr5 115174908 115175027 -37362232 - B2_Mm2 SINE B2 -76 119 1 3 1463 204 125 0 0 chr5 115175059 115175091 -37362168 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1463 624 277 32 13 chr5 115175703 115175860 -37361399 - RSINE1 SINE B4 0 165 6 3 1463 567 195 35 26 chr5 115176477 115176593 -37360666 + PB1D10 SINE Alu 1 117 0 3 1463 2409 193 46 44 chr5 115176689 115176900 -37360359 - RLTR11A LTR ERVK 0 528 332 3 1463 1187 61 0 13 chr5 115176900 115177049 -37360210 - B1_Mus1 SINE Alu -1 147 1 3 1463 2409 193 46 44 chr5 115177049 115177363 -37359896 - RLTR11A LTR ERVK -197 331 2 3 1463 1162 81 0 0 chr5 115178780 115178928 -37358331 + B1_Mus1 SINE Alu 1 148 0 3 1463 240 35 0 0 chr5 115178929 115178958 -37358301 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 3 1463 590 152 254 0 chr5 115180533 115180651 -37356608 - B1_Mus1 SINE Alu 0 148 1 3 1463 288 0 0 0 chr5 115181996 115182028 -37355231 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1463 1320 111 0 21 chr5 115182872 115182905 -37354354 - B2_Mm2 SINE B2 -6 189 160 3 1463 233 53 0 50 chr5 115182905 115182945 -37354314 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 3 1463 1320 111 0 21 chr5 115182945 115183104 -37354155 - B2_Mm2 SINE B2 -36 159 1 3 1463 189 0 0 0 chr5 115185209 115185230 -37352029 + (T)n Simple_repeat Simple_repeat 1 21 0 3 1463 1286 27 0 0 chr5 115185230 115185377 -37351882 - B1_Mm SINE Alu 0 147 1 3 1463 240 163 0 0 chr5 115185604 115185647 -37351612 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1463 213 220 50 17 chr5 115185751 115185811 -37351448 - PB1D10 SINE Alu -8 109 48 4 1463 214 124 0 50 chr5 115188362 115188409 -37348850 - B1F SINE Alu -56 64 20 4 1463 630 216 128 16 chr5 115188575 115188763 -37348496 - B3 SINE B2 -7 209 1 4 1463 402 241 62 9 chr5 115190985 115191098 -37346161 - ID_B1 SINE B4 -11 213 95 4 1463 1639 36 0 20 chr5 115191168 115191365 -37345894 + B2_Mm1a SINE B2 1 193 0 4 1463 229 242 60 15 chr5 115191566 115191633 -37345626 - RSINE1 SINE B4 -88 77 8 4 1463 401 259 60 53 chr5 115191718 115191869 -37345390 - RSINE1 SINE B4 -10 155 4 4 1463 353 291 61 36 chr5 115191962 115192158 -37345101 - B4 SINE B4 -88 204 4 4 1463 924 156 250 0 chr5 115192855 115193035 -37344224 - URR1B DNA MER1_type 0 225 1 4 1463 347 282 13 0 chr5 115195302 115195380 -37341879 - ID4_ SINE ID 0 83 5 4 1463 1190 74 0 0 chr5 115195858 115196006 -37341253 + B1_Mus1 SINE Alu 1 148 0 4 1463 180 111 0 0 chr5 115196006 115196033 -37341226 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1463 1175 82 0 0 chr5 115196383 115196530 -37340729 + B1_Mus1 SINE Alu 2 148 0 4 1463 613 342 76 18 chr5 115196812 115197154 -37340105 + MER82 DNA MER2_type 170 531 -122 4 1463 235 351 0 0 chr5 115198526 115198603 -37338656 + ID2 SINE ID 5 81 -2 4 1463 242 312 15 0 chr5 115198932 115199027 -37338232 - PB1D10 SINE Alu -16 101 6 4 1463 191 32 65 0 chr5 115202723 115202754 -37334505 + (TGGGGG)n Simple_repeat Simple_repeat 2 34 0 4 1463 503 16 16 0 chr5 115203795 115203859 -37333400 + (TG)n Simple_repeat Simple_repeat 1 65 0 4 1463 248 297 128 69 chr5 115204337 115204525 -37332734 + B4A SINE B4 84 282 -10 4 1463 383 267 111 8 chr5 115204523 115204640 -37332619 + ID_B1 SINE B4 85 213 -11 4 1463 968 248 15 0 chr5 115204660 115204862 -37332397 - B3 SINE B2 -11 205 1 4 1463 359 168 128 20 chr5 115204876 115204982 -37332277 - PB1D9 SINE Alu -13 135 11 4 1463 336 292 95 62 chr5 115205224 115205300 -37331959 - L1MC LINE L1 -2242 3904 3829 4 1463 902 186 91 20 chr5 115205300 115205497 -37331762 - B3 SINE B2 -3 213 3 4 1463 336 292 95 62 chr5 115205497 115205599 -37331660 - L1MC LINE L1 -2318 3828 3720 4 1463 275 223 267 35 chr5 115205714 115205830 -37331429 - B3 SINE B2 -6 210 68 4 1463 1012 151 201 0 chr5 115205875 115206054 -37331205 - B3 SINE B2 0 216 2 4 1463 1141 102 39 22 chr5 115206197 115206378 -37330881 + B2_Mm2 SINE B2 1 184 -11 4 1463 462 277 49 168 chr5 115206417 115206520 -37330739 - L1MEf LINE L1 -3092 3452 3365 4 1463 571 223 138 0 chr5 115206520 115206650 -37330609 - B1_Mur1 SINE Alu -1 148 1 4 1463 462 277 49 168 chr5 115206650 115206708 -37330551 - L1MEf LINE L1 -3180 3364 3319 4 1463 454 275 46 0 chr5 115206708 115206817 -37330442 + PB1D7 SINE Alu 3 116 -4 4 1463 462 278 55 168 chr5 115206817 115207095 -37330164 - L1MEf LINE L1 -3225 3319 3051 4 1463 384 287 34 17 chr5 115207140 115207257 -37330002 - RSINE1 SINE B4 0 165 47 4 1463 346 319 75 90 chr5 115207574 115207853 -37329406 - L1MEf LINE L1 -4062 2578 2304 4 1463 285 324 130 14 chr5 115208045 115208183 -37329076 - L1MEf LINE L1 -4621 2019 1866 4 1463 932 268 10 0 chr5 115208329 115208538 -37328721 - B3 SINE B2 -5 211 1 4 1463 515 121 94 31 chr5 115208622 115208750 -37328509 - Lx9 LINE L1 -8 7636 7501 4 1463 598 253 52 123 chr5 115208759 115208903 -37328356 - B4A SINE B4 -72 220 95 4 1463 1272 27 7 0 chr5 115208903 115209049 -37328210 - B1_Mus2 SINE Alu 0 147 1 4 1463 598 253 52 123 chr5 115209049 115209116 -37328143 - B4A SINE B4 -198 94 24 4 1463 263 206 104 52 chr5 115209182 115209259 -37328000 - ID4_ SINE ID 0 83 3 4 1463 511 157 252 0 chr5 115209352 115209467 -37327792 - B1_Mus1 SINE Alu 0 148 5 4 1463 241 268 131 20 chr5 115209602 115209701 -37327558 - RSINE1 SINE B4 -48 117 8 4 1463 334 342 34 0 chr5 115209753 115209902 -37327357 - L1MEf LINE L1 -5517 1123 970 4 1463 313 280 0 0 chr5 115210214 115210289 -37326970 - L1MEf LINE L1 -6435 112 38 4 1463 380 269 57 82 chr5 115210345 115210503 -37326756 + RSINE1 SINE B4 10 163 -2 4 1463 401 356 27 14 chr5 115210536 115210755 -37326504 - MER58A DNA MER1_type -2 222 1 4 1463 292 179 45 0 chr5 115211064 115211131 -37326128 + Lx9 LINE L1 7569 7638 -6 4 1463 1347 83 10 20 chr5 115211248 115211444 -37325815 + B2_Mm2 SINE B2 2 195 0 4 1464 360 0 0 0 chr5 115212699 115212739 -37324520 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1464 519 285 107 18 chr5 115212743 115212968 -37324291 - B4A SINE B4 -15 277 33 4 1464 281 306 65 24 chr5 115213138 115213262 -37323997 - B4A SINE B4 -150 142 14 4 1464 387 237 16 78 chr5 115213287 115213415 -37323844 + PB1D7 SINE Alu 1 120 0 4 1464 26 0 0 0 chr5 115213853 115213879 -37323380 + AT_rich Low_complexity Low_complexity 1 26 0 4 1464 690 246 88 36 chr5 115213890 115214084 -37323175 - B3 SINE B2 -10 206 3 4 1464 198 71 0 0 chr5 115214808 115214836 -37322423 + (TGGG)n Simple_repeat Simple_repeat 4 31 0 4 1464 333 0 0 0 chr5 115214988 115215025 -37322234 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1464 580 214 163 56 chr5 115215461 115215639 -37321620 - B3A SINE B2 0 198 2 4 1464 201 129 0 0 chr5 115215651 115215682 -37321577 + (TTC)n Simple_repeat Simple_repeat 2 32 0 4 1464 734 183 15 37 chr5 115215699 115215835 -37321424 - B1_Mur1 SINE Alu -15 134 2 4 1464 239 71 24 0 chr5 115217707 115217749 -37319510 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1464 1071 50 21 7 chr5 115217749 115217882 -37319377 - B1_Mus2 SINE Alu -11 136 1 4 1464 228 233 33 0 chr5 115218207 115218267 -37318992 - B4 SINE B4 -230 62 1 4 1464 704 254 72 22 chr5 115218815 115218957 -37318302 + B3A SINE B2 4 148 -50 4 1464 1014 122 0 0 chr5 115218957 115219137 -37318122 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1464 704 254 72 22 chr5 115219137 115219175 -37318084 + B3A SINE B2 149 193 -5 4 1464 593 198 37 9 chr5 115219185 115219292 -37317967 + PB1D9 SINE Alu 1 110 -10 4 1464 252 59 0 0 chr5 115219292 115219326 -37317933 + (CACAA)n Simple_repeat Simple_repeat 4 37 0 4 1464 285 274 14 0 chr5 115220077 115220150 -37317109 - ID4_ SINE ID 0 83 10 4 1464 309 309 67 62 chr5 115220763 115220942 -37316317 + MIR SINE MIR 9 188 -74 4 1464 266 0 29 0 chr5 115221477 115221511 -37315748 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 1464 1286 21 0 0 chr5 115221519 115221664 -37315595 - B1_Mm SINE Alu 0 147 3 4 1464 396 0 0 0 chr5 115222468 115222512 -37314747 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1464 252 59 0 0 chr5 115223083 115223117 -37314142 + (TCCCG)n Simple_repeat Simple_repeat 1 34 0 4 1464 207 0 0 0 chr5 115223655 115223678 -37313581 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1464 32 98 0 0 chr5 115224976 115225078 -37312181 + GC_rich Low_complexity Low_complexity 1 102 0 4 1464 332 344 63 16 chr5 115225383 115225617 -37311642 - MIRb SINE MIR -15 253 10 4 1464 204 290 22 24 chr5 115225666 115225784 -37311475 + MIRm SINE MIR 45 165 -111 4 1464 226 250 0 15 chr5 115225805 115225870 -37311389 - MER5B DNA MER1_type -84 94 31 4 1464 273 57 0 0 chr5 115225924 115225959 -37311300 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1464 350 312 65 51 chr5 115225974 115226190 -37311069 + MER20 DNA MER1_type 1 219 0 4 1464 472 146 0 58 chr5 115226232 115226319 -37310940 - B1F1 SINE Alu 0 149 68 4 1464 344 269 86 9 chr5 115226738 115226843 -37310416 + PB1D10 SINE Alu 4 116 -1 4 1464 371 175 268 0 chr5 115227197 115227294 -37309965 + PB1 SINE Alu 3 125 -2 4 1464 1661 31 0 10 chr5 115227305 115227499 -37309760 + B2_Mm1a SINE B2 2 193 0 4 1464 464 244 8 25 chr5 115227915 115228037 -37309222 - B1F1 SINE Alu -8 141 22 4 1464 472 221 9 46 chr5 115228585 115228694 -37308565 - B1F1 SINE Alu -23 126 22 4 1464 239 203 43 0 chr5 115229069 115229138 -37308121 + (TG)n Simple_repeat Simple_repeat 2 73 0 4 1464 1061 208 41 128 chr5 115229139 115229459 -37307800 - B4A SINE B4 0 292 1 4 1464 459 35 0 0 chr5 115229464 115229521 -37307738 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1464 207 0 0 0 chr5 115230623 115230646 -37306613 + (CAGG)n Simple_repeat Simple_repeat 3 25 0 4 1464 653 254 149 4 chr5 115231521 115231797 -37305462 + ORR1E LTR MaLR 44 359 0 4 1464 24 67 0 0 chr5 115232064 115232109 -37305150 + AT_rich Low_complexity Low_complexity 1 45 0 4 1464 359 316 93 34 chr5 115232110 115232361 -37304898 - L1MB5 LINE L1 -135 6039 5770 4 1464 770 89 0 24 chr5 115232427 115232553 -37304706 - B1_Mus2 SINE Alu 0 147 25 4 1464 461 290 51 13 chr5 115232621 115232778 -37304481 - B3A SINE B2 0 198 36 4 1464 1058 260 15 131 chr5 115233429 115233841 -37303418 + MTE2a LTR MaLR 14 377 -2 4 1464 817 328 73 17 chr5 115233855 115234209 -37303050 + Tigger7 DNA MER2_type 53 426 -2065 4 1464 656 278 7 0 chr5 115234205 115234349 -37302910 - B1_Mur1 SINE Alu -2 147 3 4 1464 269 330 16 63 chr5 115234361 115234428 -37302831 + Tigger7 DNA MER2_type 2367 2427 -64 4 1464 764 115 298 20 chr5 115234428 115234550 -37302709 + B2_Mm2 SINE B2 2 158 -37 4 1464 243 0 0 0 chr5 115234550 115234577 -37302682 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 4 1464 764 115 298 20 chr5 115234577 115234605 -37302654 + B2_Mm2 SINE B2 159 194 -1 4 1464 269 330 16 63 chr5 115234605 115234663 -37302596 + Tigger7 DNA MER2_type 2428 2486 -5 4 1464 354 45 0 0 chr5 115235253 115235297 -37301962 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1464 387 0 0 0 chr5 115235298 115235341 -37301918 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1464 316 235 100 20 chr5 115235671 115235771 -37301488 + PB1D10 SINE Alu 10 117 0 4 1464 428 267 74 46 chr5 115237743 115237959 -37299300 - ID_B1 SINE B4 0 224 3 4 1464 567 139 171 65 chr5 115238357 115238480 -37298779 - B1_Mur2 SINE Alu -7 142 7 4 1464 222 341 60 66 chr5 115238939 115239121 -37298138 - B2_Mm2 SINE B2 -2 193 13 4 1464 657 279 0 0 chr5 115238984 115239131 -37298128 - RSINE1 SINE B4 -15 150 4 5 1464 309 116 14 28 chr5 115239441 115239512 -37297747 + (TG)n Simple_repeat Simple_repeat 2 71 0 5 1464 250 169 162 38 chr5 115239817 115239897 -37297362 - PB1 SINE Alu -9 118 29 5 1464 1428 70 16 5 chr5 115240094 115240280 -37296979 - B2_Mm2 SINE B2 -7 188 1 5 1464 1399 79 0 41 chr5 115240380 115240577 -37296682 - B2_Mm2 SINE B2 -5 190 2 5 1464 186 133 0 0 chr5 115240857 115240887 -37296372 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 5 1464 410 255 72 7 chr5 115240957 115241095 -37296164 - B1F1 SINE Alu -2 147 1 5 1464 343 254 219 8 chr5 115241441 115241564 -37295695 - B1_Mur1 SINE Alu 0 149 1 5 1464 180 0 0 0 chr5 115242044 115242064 -37295195 + (GGGGA)n Simple_repeat Simple_repeat 3 22 0 5 1464 249 135 0 0 chr5 115243678 115243730 -37293529 + (T)n Simple_repeat Simple_repeat 1 52 0 5 1464 347 230 87 58 chr5 115244850 115244966 -37292293 + PB1D10 SINE Alu 3 120 0 5 1464 23 33 0 0 chr5 115246002 115246032 -37291227 + AT_rich Low_complexity Low_complexity 1 30 0 5 1464 305 62 0 20 chr5 115246135 115246184 -37291075 + (CAAAA)n Simple_repeat Simple_repeat 1 48 0 5 1464 283 57 37 19 chr5 115246930 115246984 -37290275 + (CCCCG)n Simple_repeat Simple_repeat 2 56 0 5 1464 1460 74 16 21 chr5 115248757 115248951 -37288308 - B2_Mm2 SINE B2 -1 194 2 5 1464 435 38 0 0 chr5 115249065 115249118 -37288141 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1464 501 17 0 0 chr5 115249325 115249383 -37287876 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 1464 500 266 71 14 chr5 115249661 115249802 -37287457 + B1_Mur2 SINE Alu 1 149 0 5 1464 287 123 0 0 chr5 115249874 115249923 -37287336 + B1_Mur4 SINE Alu 71 149 -1 5 1464 522 225 27 34 chr5 115250075 115250222 -37287037 + B1_Mur2 SINE Alu 2 147 -2 5 1464 204 163 0 0 chr5 115251302 115251345 -37285914 + (CACCC)n Simple_repeat Simple_repeat 3 45 0 5 1464 217 195 24 0 chr5 115251460 115251501 -37285758 + PB1D10 SINE Alu 48 89 -28 5 1464 346 262 47 28 chr5 115251476 115251582 -37285677 + B1F SINE Alu 42 149 0 5 1464 1220 68 0 0 chr5 115252199 115252346 -37284913 + B1_Mus2 SINE Alu 1 147 0 5 1464 180 111 0 0 chr5 115252827 115252854 -37284405 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1464 943 150 99 6 chr5 115252877 115253058 -37284201 - B3 SINE B2 -17 199 2 5 1464 181 330 61 75 chr5 115253182 115253395 -37283864 - L2 LINE L2 -524 2895 2686 5 1464 23 78 0 0 chr5 115255427 115255478 -37281781 + AT_rich Low_complexity Low_complexity 1 51 0 5 1464 198 0 0 0 chr5 115255864 115255886 -37281373 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1464 403 277 0 17 chr5 115257052 115257186 -37280073 - PB1D9 SINE Alu -18 131 2 5 1464 591 240 70 80 chr5 115257189 115257388 -37279871 - B3A SINE B2 -1 197 1 5 1464 255 61 0 0 chr5 115257879 115257912 -37279347 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 5 1464 796 217 119 5 chr5 115257964 115258149 -37279110 - B3 SINE B2 -9 207 2 5 1464 313 292 120 96 chr5 115258773 115258898 -37278361 - RSINE1 SINE B4 -35 130 3 5 1464 275 306 171 89 chr5 115259758 115260027 -37277232 - B4A SINE B4 0 292 2 5 1464 206 328 86 43 chr5 115260052 115260192 -37277067 - L2 LINE L2 -567 2852 2707 5 1464 1419 61 50 0 chr5 115260270 115260426 -37276833 + B2_Mm2 SINE B2 2 157 -38 5 1464 216 0 0 0 chr5 115260426 115260450 -37276809 + (CAAT)n Simple_repeat Simple_repeat 4 27 0 5 1464 1419 61 50 0 chr5 115260450 115260474 -37276785 + B2_Mm2 SINE B2 158 189 -6 5 1464 858 238 10 36 chr5 115260602 115260794 -37276465 - B3A SINE B2 -11 187 1 5 1464 804 108 104 30 chr5 115261311 115261445 -37275814 - B1_Mur3 SINE Alu -1 148 5 5 1464 209 333 48 19 chr5 115262337 115262441 -37274818 + MIR3 SINE MIR 48 154 -54 5 1464 1608 148 0 15 chr5 115262758 115263019 -37274240 - RLTR10E LTR ERVK 0 311 55 5 1464 2510 97 3 0 chr5 115263032 115263382 -37273877 - MMERVK10C-int LTR ERVK -503 7078 6728 5 1464 1852 167 16 16 chr5 115263388 115263699 -37273560 - RLTR10E LTR ERVK 0 311 1 5 1464 1260 110 11 6 chr5 115264276 115264459 -37272800 - B2_Mm1t SINE B2 -7 186 3 5 1464 779 104 11 238 chr5 115264485 115264674 -37272585 - B1_Mus2 SINE Alu 0 147 2 5 1464 1139 176 29 5 chr5 115264694 115264899 -37272360 - B3 SINE B2 -6 210 1 5 1464 634 87 2 23 chr5 115264993 115265098 -37272161 - B1_Mm SINE Alu 0 149 47 5 1464 463 269 76 54 chr5 115265101 115265325 -37271934 - L1MB4 LINE L1 -60 6120 5892 5 1464 212 0 0 35 chr5 115265331 115265360 -37271899 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1464 1181 49 0 14 chr5 115265360 115265499 -37271760 - B1_Mus2 SINE Alu -9 138 1 5 1464 4999 178 61 34 chr5 115265539 115266644 -37270615 + MYSERV6-int LTR ERVK 1694 2828 -6131 5 1464 442 213 53 99 chr5 115266651 115266802 -37270457 - RLTR25B LTR ERVK -645 383 240 5 1464 201 74 0 0 chr5 115267373 115267400 -37269859 + (G)n Simple_repeat Simple_repeat 1 27 0 5 1464 342 0 0 0 chr5 115267564 115267602 -37269657 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1464 243 0 0 0 chr5 115269190 115269217 -37268042 + (C)n Simple_repeat Simple_repeat 1 27 0 5 1464 190 222 65 22 chr5 115269443 115269489 -37267770 + L2c LINE L2 3111 3158 -229 5 1464 637 339 53 45 chr5 115269590 115270059 -37267200 + L1MC LINE L1 2129 2601 -3545 5 1464 1838 180 0 25 chr5 115271313 115271632 -37265627 - RLTR10E LTR ERVK 0 311 1 5 1464 1847 172 78 26 chr5 115271708 115271863 -37265396 - MMERVK10C-int LTR ERVK -258 7422 7273 5 1464 4315 55 44 13 chr5 115271863 115272410 -37264849 - LTRIS2 LTR ERV1 0 564 1 5 1464 3383 104 47 0 chr5 115272410 115272903 -37264356 - MMERVK10C-int LTR ERVK -408 7272 6728 5 1464 1567 176 48 63 chr5 115272909 115273225 -37264034 - RLTR10E LTR ERVK 0 311 1 5 1464 1243 105 16 6 chr5 115273818 115274000 -37263259 - B2_Mm1t SINE B2 -7 186 3 5 1464 872 114 14 21 chr5 115274052 115274195 -37263064 - B1_Mus1 SINE Alu 0 148 7 5 1464 864 249 53 5 chr5 115274214 115274420 -37262839 - B3 SINE B2 0 216 1 5 1464 224 289 25 38 chr5 115274488 115274567 -37262692 - B3 SINE B2 -52 164 87 5 1464 229 271 69 28 chr5 115274790 115274862 -37262397 + MLT1K LTR MaLR 142 216 -379 5 1464 722 190 27 47 chr5 115274922 115275071 -37262188 - B1_Mur2 SINE Alu -1 148 3 5 1464 1164 171 29 5 chr5 115275092 115275297 -37261962 - B3 SINE B2 -6 210 1 5 1464 632 76 2 44 chr5 115275393 115275500 -37261759 - B1_Mm SINE Alu 0 149 47 5 1464 445 282 55 75 chr5 115275503 115275756 -37261503 - L1MB4 LINE L1 -60 6120 5873 5 1464 1237 48 0 7 chr5 115275759 115275907 -37261352 - B1_Mus2 SINE Alu 0 147 1 5 1464 354 236 8 117 chr5 115276724 115276740 -37260519 + MT2B LTR ERVL 152 154 -447 5 1464 895 144 24 14 chr5 115276740 115276906 -37260353 + B1_Mus1 SINE Alu 1 310 -1 5 1464 422 288 22 119 chr5 115276908 115277018 -37260241 + L1M3 LINE L1 2926 3038 -3102 5 1464 1187 62 7 0 chr5 115277018 115277163 -37260096 + B1_Mus1 SINE Alu 1 146 -2 5 1464 422 288 22 119 chr5 115277163 115277423 -37259836 + L1M3 LINE L1 3039 3260 -2880 5 1464 1555 33 28 0 chr5 115279414 115279595 -37257664 + B2_Mm1a SINE B2 1 186 -7 5 1464 353 178 451 0 chr5 115279649 115279790 -37257469 - B3 SINE B2 0 216 12 5 1464 791 204 74 74 chr5 115279790 115280033 -37257226 + ORR1D1 LTR MaLR 1 243 -131 5 1464 342 310 92 0 chr5 115280163 115280243 -37257016 - PB1D10 SINE Alu -8 109 22 5 1464 306 0 0 0 chr5 115280243 115280277 -37256982 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1464 592 195 179 184 chr5 115281041 115281128 -37256131 - B3 SINE B2 -8 208 99 5 1464 1165 81 0 0 chr5 115281128 115281276 -37255983 + B1_Mus1 SINE Alu 1 148 0 5 1464 592 195 179 184 chr5 115281276 115281395 -37255864 - B3 SINE B2 -118 98 3 5 1464 279 79 0 0 chr5 115281438 115281476 -37255783 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1464 3442 18 16 0 chr5 115281476 115281863 -37255396 + MTA_Mm LTR MaLR 4 396 0 5 1464 282 29 0 0 chr5 115281888 115281923 -37255336 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1464 1428 34 56 11 chr5 115282176 115282355 -37254904 - B2_Mm2 SINE B2 -7 188 2 5 1464 1249 61 0 0 chr5 115282396 115282543 -37254716 - B1_Mus1 SINE Alu 0 148 2 5 1464 823 174 38 13 chr5 115282581 115282738 -37254521 + URR1A DNA MER1_type 1 161 -65 5 1464 2168 282 102 118 chr5 115283067 115283236 -37254023 - MYSERV16_I-int LTR ERVK -566 1760 1580 5 1464 1068 108 0 0 chr5 115283236 115283384 -37253875 + B1_Mus1 SINE Alu 1 148 0 5 1464 2168 282 102 118 chr5 115283384 115283705 -37253554 - MYSERV16_I-int LTR ERVK -747 1579 1317 5 1464 1723 21 0 0 chr5 115283705 115283897 -37253362 - B2_Mm1a SINE B2 0 193 2 5 1464 2168 278 101 112 chr5 115283897 115285102 -37252157 - MYSERV16_I-int LTR ERVK -1010 1316 100 5 1464 342 0 0 0 chr5 115285102 115285140 -37252119 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1464 2168 256 52 6 chr5 115285140 115285247 -37252012 - MYSERV16_I-int LTR ERVK -2227 99 4 5 1464 604 201 7 65 chr5 115285419 115285557 -37251702 - B1_Mur4 SINE Alu -2 148 19 5 1464 491 193 40 73 chr5 115285909 115286060 -37251199 - MYSERV6-int LTR ERVK -2285 6674 6529 5 1464 1161 127 40 0 chr5 115286063 115286236 -37251023 + B2_Mm2 SINE B2 2 181 -14 5 1464 216 86 0 0 chr5 115286236 115286271 -37250988 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1464 1289 27 0 0 chr5 115286271 115286418 -37250841 - B1_Mm SINE Alu 0 147 1 5 1464 21 36 0 0 chr5 115286506 115286534 -37250725 + AT_rich Low_complexity Low_complexity 1 28 0 5 1464 1243 68 0 0 chr5 115286605 115286752 -37250507 - B1_Mus1 SINE Alu -1 147 1 5 1464 241 233 188 62 chr5 115286832 115286928 -37250331 - B1_Mur2 SINE Alu -15 134 27 6 1464 1952 155 228 25 chr5 115287341 115287779 -37249480 - RLTR11A2 LTR ERVK 0 527 1 6 1464 758 195 12 43 chr5 115288374 115288535 -37248724 + RMER6B LTR ERVK 268 423 -38 6 1464 243 0 0 0 chr5 115288542 115288569 -37248690 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1464 13356 161 52 35 chr5 115288574 115291354 -37245905 + MYSERV6-int LTR ERVK 2 2828 -6131 6 1464 1503 185 70 91 chr5 115291361 115291735 -37245524 - RLTR25A LTR ERVK -717 386 21 6 1464 205 222 65 22 chr5 115294908 115294954 -37242305 + L2c LINE L2 3111 3158 -229 6 1464 464 326 59 50 chr5 115295062 115295517 -37241742 + L1MC LINE L1 2136 2594 -3552 6 1464 218 29 0 56 chr5 115297893 115297929 -37239330 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 6 1464 313 102 0 33 chr5 115300956 115301017 -37236242 + (TCC)n Simple_repeat Simple_repeat 1 59 0 6 1464 474 194 64 9 chr5 115301746 115301855 -37235404 + LSU-rRNA_Hsa rRNA rRNA 3523 3637 -1398 6 1464 828 61 0 17 chr5 115301855 115301971 -37235288 + B1_Mus2 SINE Alu 34 147 0 6 1464 628 54 308 0 chr5 115301982 115302089 -37235170 + LSU-rRNA_Hsa rRNA rRNA 3629 3768 -1267 6 1464 1112 78 40 35 chr5 115302096 115302269 -37234990 - LSU-rRNA_Hsa rRNA rRNA -1068 3967 3794 6 1464 698 107 94 51 chr5 115302321 115302459 -37234800 + LSU-rRNA_Hsa rRNA rRNA 4249 4392 -643 6 1464 205 145 185 46 chr5 115302554 115302619 -37234640 + MIR SINE MIR 35 108 -100 6 1464 284 286 116 37 chr5 115303867 115304056 -37233203 + MER68 LTR ERVL 360 563 0 6 1464 386 222 15 0 chr5 115304087 115304222 -37233037 + (CATA)n Simple_repeat Simple_repeat 2 138 0 6 1464 2389 95 0 57 chr5 115304979 115305349 -37231910 - MTB LTR MaLR 0 400 52 6 1464 285 199 0 101 chr5 115306121 115306289 -37230970 + (CAGTG)n Simple_repeat Simple_repeat 3 153 0 6 1464 1146 89 12 29 chr5 115307627 115307800 -37229459 + B2_Mm2 SINE B2 2 171 -24 6 1464 1051 77 0 82 chr5 115310455 115310626 -37226633 + B2_Mm2 SINE B2 2 158 -37 6 1464 243 0 0 0 chr5 115310626 115310653 -37226606 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6 1464 1173 82 0 0 chr5 115312291 115312438 -37224821 - B1_Mus1 SINE Alu 0 148 2 6 1464 293 131 16 0 chr5 115313147 115313208 -37224051 + (GGGA)n Simple_repeat Simple_repeat 1 62 0 6 1464 1264 98 65 5 chr5 115313610 115313794 -37223465 - B2_Mm2 SINE B2 0 195 1 6 1464 207 0 0 0 chr5 115313855 115313878 -37223381 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1464 357 82 0 0 chr5 115313967 115314016 -37223243 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1464 228 333 15 0 chr5 115314230 115314365 -37222894 + L1M2 LINE L1 4692 4828 -1315 6 1464 304 21 62 0 chr5 115314603 115314651 -37222608 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 6 1464 240 207 17 17 chr5 115314676 115314735 -37222524 + RMER30 DNA MER1_type 139 197 -5 6 1464 282 271 130 0 chr5 115316076 115316171 -37221088 + RSINE1 SINE B4 87 161 -4 6 1464 345 226 95 77 chr5 115316494 115316662 -37220597 + L1_Rod LINE L1 1624 1794 -4053 6 1464 225 0 0 0 chr5 115316860 115316885 -37220374 + (CAAAC)n Simple_repeat Simple_repeat 4 28 0 6 1464 25 31 0 0 chr5 115316995 115317027 -37220232 + AT_rich Low_complexity Low_complexity 1 32 0 6 1464 228 298 95 42 chr5 115318147 115318222 -37219037 + L1_Rod LINE L1 1779 1855 -3992 6 1464 901 138 0 0 chr5 115318222 115318367 -37218892 - B1_Mm SINE Alu -2 145 1 6 1464 228 298 95 42 chr5 115318367 115318480 -37218779 + L1_Rod LINE L1 1856 1977 -3870 6 1464 250 267 151 0 chr5 115318677 115318763 -37218496 + B3A SINE B2 2 100 -98 6 1464 1827 132 99 55 chr5 115318768 115319112 -37218147 - ORR1B2 LTR MaLR -8 359 1 6 1464 242 302 81 0 chr5 115319112 115319194 -37218065 + B3A SINE B2 94 182 -16 6 1464 780 210 0 0 chr5 115319210 115319561 -37217698 + (CA)n Simple_repeat Simple_repeat 1 351 0 6 1464 1380 89 21 5 chr5 115319666 115319857 -37217402 - B2_Mm2 SINE B2 0 195 2 6 1464 374 179 191 0 chr5 115320441 115320525 -37216734 - PB1D7 SINE Alu -9 118 19 6 1464 210 167 0 0 chr5 115320770 115320806 -37216453 + GA-rich Low_complexity Low_complexity 3 38 0 6 1464 853 203 17 86 chr5 115321097 115321193 -37216066 - RLTR22_Mur LTR ERVK -40 1808 1720 6 1464 1204 61 0 13 chr5 115321193 115321342 -37215917 + B1_Mus1 SINE Alu 1 147 -1 6 1464 853 203 17 86 chr5 115321342 115321477 -37215782 - RLTR22_Mur LTR ERVK -129 1719 1593 6 1464 3586 185 73 40 chr5 115321573 115322439 -37214820 - RLTR22_Mur LTR ERVK -954 894 1 6 1464 363 213 71 93 chr5 115323773 115323913 -37213346 - B1_Mur2 SINE Alu -11 138 2 6 1464 252 0 0 0 chr5 115323922 115323950 -37213309 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1464 764 246 28 24 chr5 115324634 115324846 -37212413 - B3 SINE B2 0 216 4 6 1464 201 226 0 0 chr5 115326858 115326911 -37210348 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1464 662 207 6 0 chr5 115326927 115327101 -37210158 + (CA)n Simple_repeat Simple_repeat 2 176 0 6 1464 733 274 0 18 chr5 115327647 115327814 -37209445 - RSINE1 SINE B4 0 165 2 6 1464 22 0 0 0 chr5 115328401 115328423 -37208836 + GC_rich Low_complexity Low_complexity 1 22 0 6 1464 2440 72 118 0 chr5 115329793 115330142 -37207117 - RLTR10 LTR ERVK 0 390 1 6 1464 8613 18 0 0 chr5 115330144 115331139 -37206120 - RLTR10-int LTR ERVK -3 1984 990 6 1464 298 256 62 39 chr5 115331221 115331351 -37205908 - RLTR10-int LTR ERVK -5987 1594 1462 6 1464 5675 37 1 4 chr5 115331415 115332114 -37205145 - RLTR10-int LTR ERVK -989 998 302 6 1464 2402 75 119 11 chr5 115332114 115332466 -37204793 - RLTR10 LTR ERVK 0 390 1 6 1464 3631 137 12 77 chr5 115333596 115333765 -37203494 + RLTR21 LTR ERVK 323 470 -1102 6 1464 1312 27 0 0 chr5 115333765 115333913 -37203346 - B1_Mus1 SINE Alu 0 148 1 6 1464 3631 137 12 77 chr5 115333913 115334409 -37202850 + RLTR21 LTR ERVK 471 945 -627 6 1464 530 288 11 16 chr5 115335103 115335262 -37201997 + B3A SINE B2 13 173 -43 6 1464 198 0 0 0 chr5 115335262 115335284 -37201975 + (TC)n Simple_repeat Simple_repeat 1 22 0 6 1464 991 133 27 27 chr5 115335306 115335480 -37201779 - B1_Mus1 SINE Alu 0 148 9 6 1464 637 227 52 96 chr5 115335451 115335700 -37201559 - MTD LTR MaLR -176 243 6 6 1464 554 242 13 32 chr5 115335704 115335863 -37201396 + Lx7 LINE L1 5633 5788 -1685 6 1464 1220 75 0 0 chr5 115335863 115336010 -37201249 + B1_Mus2 SINE Alu 1 147 0 6 1464 468 262 46 36 chr5 115336010 115336044 -37201215 + Lx7 LINE L1 5789 5828 -1645 6 1464 6228 68 16 5 chr5 115336063 115336862 -37200397 + RLTR13C2 LTR ERVK 1 808 0 6 1464 236 211 20 31 chr5 115337103 115337201 -37200058 + G-rich Low_complexity Low_complexity 3 99 0 6 1464 23 0 0 0 chr5 115337268 115337291 -37199968 + AT_rich Low_complexity Low_complexity 1 23 0 6 1464 795 254 55 5 chr5 115337291 115337493 -37199766 + B3 SINE B2 1 212 -4 6 1464 2462 155 21 17 chr5 115337646 115337696 -37199563 - RMER4A LTR ERVK -11 455 410 6 1464 5065 44 2 0 chr5 115337696 115338282 -37198977 + LTRIS_Mus LTR ERV1 1 587 0 6 1464 2462 155 21 17 chr5 115338282 115338652 -37198607 - RMER4A LTR ERVK -57 409 33 6 1464 216 0 0 0 chr5 115338652 115338676 -37198583 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1464 1228 41 0 0 chr5 115338676 115338822 -37198437 - B1_Mm SINE Alu 0 147 2 6 1464 362 22 0 0 chr5 115338822 115338868 -37198391 - RMER4A LTR ERVK -420 46 1 6 1464 725 269 0 0 chr5 115339784 115339933 -37197326 + B3 SINE B2 1 149 -67 6 1464 3621 87 48 73 chr5 115339933 115340552 -37196707 + RLTR6_Mm LTR ERV1 1 604 -50 6 1464 6290 28 46 17 chr5 115340553 115341359 -37195900 + RLTR6-int LTR ERV1 1 829 -6949 6 1464 409 287 0 59 chr5 115341353 115341505 -37195754 + MMVL30-int LTR ERV1 391 533 -7023 6 22 7455 32 95 4 chr5 115341853 115344534 -37192725 + MMVL30-int LTR ERV1 772 3698 0 6 1465 3473 87 50 75 chr5 115344534 115345133 -37192126 + RLTR6_Mm LTR ERV1 1 584 -70 6 1465 264 211 0 0 chr5 115345133 115345185 -37192074 + B3 SINE B2 146 197 -19 6 1465 1233 48 0 0 chr5 115345192 115345338 -37191921 - B1_Mus2 SINE Alu 0 147 2 6 1465 1188 208 69 176 chr5 115346029 115346107 -37191152 + MTC LTR MaLR 20 90 -331 6 1465 1208 36 0 0 chr5 115346107 115346244 -37191015 + B1_Mus1 SINE Alu 1 137 -11 6 1465 261 0 0 0 chr5 115346247 115346276 -37190983 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1465 1188 208 69 176 chr5 115346276 115346555 -37190704 + MTC LTR MaLR 91 365 -56 6 1465 1171 68 7 0 chr5 115346555 115346701 -37190558 + B1_Mus1 SINE Alu 2 148 0 6 1465 1188 208 69 176 chr5 115346701 115346788 -37190471 + MTC LTR MaLR 366 421 0 6 1465 225 289 40 81 chr5 115347866 115347990 -37189269 + MIRb SINE MIR 40 158 -110 6 1465 939 116 14 28 chr5 115348163 115348305 -37188954 + B1_Mus2 SINE Alu 2 141 -6 6 1465 199 197 61 0 chr5 115348306 115348372 -37188887 + GA-rich Low_complexity Low_complexity 1 70 0 6 1465 1229 55 7 0 chr5 115348652 115348798 -37188461 - B1_Mus1 SINE Alu 0 148 2 6 1465 623 206 29 37 chr5 115349119 115349255 -37188004 + B1F2 SINE Alu 1 135 -14 6 1465 410 246 86 78 chr5 115349427 115349555 -37187704 + B3 SINE B2 79 207 -9 6 1465 1094 112 0 0 chr5 115350345 115350488 -37186771 + B1_Mur4 SINE Alu 1 143 -7 6 1465 206 128 0 25 chr5 115350489 115350529 -37186730 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 6 1465 300 294 0 34 chr5 115350818 115350906 -37186353 + PB1D10 SINE Alu 19 103 -14 6 1465 1396 89 21 5 chr5 115350917 115351109 -37186150 + B2_Mm2 SINE B2 1 195 0 6 1465 347 268 0 12 chr5 115351492 115351575 -37185684 + ID4_ SINE ID 1 82 -1 6 1465 524 129 46 53 chr5 115351892 115352023 -37185236 - Lx LINE L1 -4 6650 6521 6 1465 218 267 44 0 chr5 115352039 115352084 -37185175 - MIRb SINE MIR -194 74 28 6 1465 599 216 198 0 chr5 115352554 115352716 -37184543 + B3A SINE B2 3 196 -2 6 1465 365 346 72 32 chr5 115352782 115353003 -37184256 - B4 SINE B4 0 292 63 6 1465 180 291 0 0 chr5 115353306 115353385 -37183874 + (TG)n Simple_repeat Simple_repeat 1 79 0 6 1465 355 343 67 71 chr5 115353406 115353634 -37183625 - L1M5 LINE L1 -1117 5029 4799 6 1465 286 317 0 24 chr5 115353634 115353718 -37183541 - ID4_ SINE ID 0 83 2 6 1465 355 343 67 71 chr5 115353718 115353743 -37183516 - L1M5 LINE L1 -1348 4798 4777 6 1465 270 208 123 14 chr5 115353760 115353819 -37183440 + RSINE1 SINE B4 83 150 -15 6 1465 492 18 0 0 chr5 115353819 115353876 -37183383 + (TC)n Simple_repeat Simple_repeat 1 57 0 6 1465 270 208 123 14 chr5 115353876 115353889 -37183370 + RSINE1 SINE B4 151 163 -2 6 1465 462 289 26 0 chr5 115353897 115354011 -37183248 + PB1D10 SINE Alu 1 117 0 6 1465 339 299 19 9 chr5 115354029 115354137 -37183122 + Lx8 LINE L1 6741 6849 -624 6 1465 785 283 173 10 chr5 115354199 115354616 -37182643 + Lx8 LINE L1 6980 7464 -9 6 1465 210 71 0 0 chr5 115354797 115354825 -37182434 + (TC)n Simple_repeat Simple_repeat 2 29 0 6 1465 840 247 62 54 chr5 115355465 115355702 -37181557 + LTRIS4 LTR ERV1 285 512 -116 6 1465 199 182 68 0 chr5 115357531 115357575 -37179684 + MIRc SINE MIR 121 167 -101 6 1465 3414 38 5 0 chr5 115357664 115358058 -37179201 - MTA_Mm LTR MaLR 0 396 1 7 1465 201 108 0 0 chr5 115358430 115358467 -37178792 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1465 1787 139 71 76 chr5 115358524 115358891 -37178368 - ORR1B2 LTR MaLR 0 367 3 7 1465 201 258 0 61 chr5 115359282 115359315 -37177944 + T-rich Low_complexity Low_complexity 64 94 0 7 1465 1235 99 5 47 chr5 115359315 115359334 -37177925 - B2_Mm1t SINE B2 -7 186 172 7 1465 1186 36 0 0 chr5 115359334 115359472 -37177787 + B1_Mus1 SINE Alu 1 138 -10 7 1465 261 0 0 0 chr5 115359472 115359501 -37177758 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1465 1235 99 5 47 chr5 115359501 115359670 -37177589 - B2_Mm1t SINE B2 -22 171 6 7 1465 809 150 0 56 chr5 115359670 115359832 -37177427 - Lx LINE L1 -12 6642 6490 7 1465 253 194 0 31 chr5 115359832 115359896 -37177363 + T-rich Low_complexity Low_complexity 2 63 0 7 1465 486 136 122 20 chr5 115359899 115359997 -37177262 - B1_Mus2 SINE Alu 0 147 40 7 1465 1143 84 15 128 chr5 115360377 115360581 -37176678 + B2_Mm2 SINE B2 2 182 -13 7 1465 280 154 65 7 chr5 115360589 115360674 -37176585 + B2_Mm2 SINE B2 28 121 -95 7 1465 826 92 125 0 chr5 115361498 115361618 -37175641 + B1_Mus1 SINE Alu 1 135 -13 7 1465 219 69 0 0 chr5 115361618 115361647 -37175612 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 7 1465 223 333 159 6 chr5 115361875 115362032 -37175227 + MER5A DNA MER1_type 8 188 -1 7 1465 4481 80 16 0 chr5 115362535 115363110 -37174149 - MT2B2 LTR ERVL 0 584 1 7 1465 1465 73 0 15 chr5 115363362 115363557 -37173702 + B2_Mm2 SINE B2 1 192 -3 7 1465 956 105 45 0 chr5 115363563 115363696 -37173563 + B1_Mus1 SINE Alu 1 139 -9 7 1465 1067 124 6 0 chr5 115364191 115364368 -37172891 + (TC)n Simple_repeat Simple_repeat 1 178 0 7 1465 233 171 89 65 chr5 115364392 115364465 -37172794 + RMER21A LTR ERV1 623 682 -265 7 1465 1487 165 127 19 chr5 115364539 115364909 -37172350 - RMER17C LTR ERVK 0 410 1 7 1465 707 272 0 32 chr5 115365056 115365242 -37172017 + B3A SINE B2 3 182 -16 7 1465 483 229 0 17 chr5 115365242 115365420 -37171839 + (CA)n Simple_repeat Simple_repeat 1 175 0 7 1465 268 173 0 51 chr5 115365474 115365553 -37171706 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1465 1221 41 7 0 chr5 115365597 115365743 -37171516 + B1_Mus1 SINE Alu 2 148 0 7 1465 447 262 58 39 chr5 115365950 115366105 -37171154 + MLT1J LTR MaLR 8 165 -347 7 1465 241 279 12 60 chr5 115366032 115366116 -37171143 + LTR33B LTR ERVL 74 153 -350 7 1465 301 173 0 19 chr5 115366235 115366288 -37170971 - HAL1-3A_ME LINE L1 -831 2027 1976 7 1465 508 177 11 33 chr5 115366288 115366469 -37170790 + (TG)n Simple_repeat Simple_repeat 1 177 0 7 1465 490 294 91 105 chr5 115366506 115366802 -37170457 - B4 SINE B4 0 292 1 7 1465 1239 41 139 6 chr5 115367096 115367268 -37169991 + B2_Mm2 SINE B2 1 195 0 7 1465 560 186 88 25 chr5 115367278 115367438 -37169821 - MT2A LTR ERVL -2 531 362 7 1465 907 243 102 102 chr5 115367576 115367624 -37169635 - MT2A LTR ERVL -227 306 275 7 1465 978 70 224 31 chr5 115367624 115367785 -37169474 + B2_Mm2 SINE B2 2 193 -2 7 1465 907 243 102 102 chr5 115367785 115368039 -37169220 - MT2A LTR ERVL -259 274 4 7 1465 651 210 21 48 chr5 115368111 115368256 -37169003 + B1F SINE Alu 9 149 0 7 1465 293 224 0 84 chr5 115368293 115368376 -37168883 + MT2B2 LTR ERVL 165 240 -344 7 1465 854 133 7 7 chr5 115368303 115368439 -37168820 + B1_Mus2 SINE Alu 11 146 -1 7 1465 1211 77 107 0 chr5 115368439 115368608 -37168651 + B2_Mm2 SINE B2 2 188 -7 7 1465 423 303 69 58 chr5 115368635 115368824 -37168435 - MLT2B2 LTR ERVL -2 560 370 7 1465 280 364 22 44 chr5 115369004 115369139 -37168120 + B4 SINE B4 2 133 -159 7 1465 1099 181 21 0 chr5 115369192 115369380 -37167879 - RLTR14 LTR ERV1 0 382 191 7 1465 588 195 0 0 chr5 115369390 115369544 -37167715 + (CA)n Simple_repeat Simple_repeat 2 155 0 7 1465 237 108 0 0 chr5 115369561 115369598 -37167661 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 1465 241 238 95 0 chr5 115369628 115369691 -37167568 - MLT2B2 LTR ERVL -484 72 4 7 1465 1335 14 0 0 chr5 115370427 115370574 -37166685 + B1_Mm SINE Alu 1 147 0 7 1465 225 347 99 0 chr5 115370655 115370776 -37166483 + Lx8 LINE L1 6098 6230 -1243 7 1465 3469 87 2 2 chr5 115370997 115371447 -37165812 + L1_Mus1 LINE L1 6118 6567 0 7 1465 1093 107 30 65 chr5 115371536 115371736 -37165523 - B2_Mm2 SINE B2 -2 193 1 7 1465 748 189 8 8 chr5 115371752 115371885 -37165374 - B1_Mur1 SINE Alu -13 136 4 7 1465 322 316 103 0 chr5 115372063 115372237 -37165022 + L2 LINE L2 2071 2262 -1157 7 1465 543 92 0 13 chr5 115372386 115372463 -37164796 - B1_Mur4 SINE Alu -3 147 72 7 1465 454 168 25 21 chr5 115372463 115372611 -37164648 - GSAT_MM Satellite Satellite -171 300 34 7 1465 434 324 0 18 chr5 115372624 115372737 -37164522 + RSINE1 SINE B4 37 147 -18 7 1465 62 76 0 0 chr5 115372766 115372898 -37164361 + AT_rich Low_complexity Low_complexity 1 132 0 7 1465 242 207 41 17 chr5 115373807 115373885 -37163374 - MIR SINE MIR -67 201 122 7 1465 233 259 126 23 chr5 115373969 115374056 -37163203 + B4 SINE B4 84 179 -113 7 1465 419 73 15 0 chr5 115374069 115374137 -37163122 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1465 216 265 0 0 chr5 115374336 115374385 -37162874 + ID4_ SINE ID 1 49 -34 7 1465 669 278 14 84 chr5 115374702 115374952 -37162307 + B4 SINE B4 83 278 -14 7 1465 183 361 73 9 chr5 115374984 115375093 -37162166 - MIR SINE MIR -64 144 29 7 1465 221 371 0 0 chr5 115375191 115375280 -37161979 + MIRc SINE MIR 54 142 -126 7 1465 664 247 51 13 chr5 115376575 115376731 -37160528 + RSINE1 SINE B4 3 164 -1 7 1465 352 135 0 0 chr5 115376808 115376860 -37160399 + B2_Mm2 SINE B2 1 52 -143 7 1465 282 56 0 0 chr5 115377229 115377265 -37159994 + (TGGA)n Simple_repeat Simple_repeat 4 39 0 7 1465 429 252 39 54 chr5 115377693 115377823 -37159436 + B1F SINE Alu 11 138 -11 7 1465 495 266 94 0 chr5 115378952 115379080 -37158179 + B1_Mur2 SINE Alu 2 141 -8 7 1465 861 100 22 58 chr5 115379118 115379256 -37158003 + B1_Mur4 SINE Alu 5 137 -13 7 1465 315 0 0 0 chr5 115379260 115379295 -37157964 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1465 228 182 0 0 chr5 115379296 115379340 -37157919 + GA-rich Low_complexity Low_complexity 4 47 0 7 1465 1440 142 189 17 chr5 115379376 115379726 -37157533 - RMER17C LTR ERVK 0 410 1 7 1465 1608 53 0 0 chr5 115380391 115380580 -37156679 + B2_Mm1t SINE B2 1 189 -4 7 1465 386 198 184 20 chr5 115380680 115380778 -37156481 + B1F1 SINE Alu 9 122 -27 7 1465 332 248 205 27 chr5 115380778 115380792 -37156467 + ID_B1 SINE B4 90 221 -3 7 1465 781 184 80 70 chr5 115380795 115380982 -37156277 + B3A SINE B2 10 198 0 7 1465 1503 48 21 0 chr5 115380990 115381177 -37156082 + B2_Mm2 SINE B2 2 192 -3 7 1465 2688 114 40 56 chr5 115381518 115381946 -37155313 - MTC LTR MaLR 0 421 1 7 1465 976 269 31 24 chr5 115381986 115382276 -37154983 + B4A SINE B4 1 292 0 7 1465 272 263 149 58 chr5 115382335 115382456 -37154803 + RSINE1 SINE B4 6 137 -28 7 1465 293 296 71 33 chr5 115382531 115382653 -37154606 - MIR SINE MIR -83 193 60 7 1465 628 178 0 11 chr5 115383004 115383186 -37154073 + GA-rich Low_complexity Low_complexity 1 180 0 7 1465 426 175 0 0 chr5 115383756 115383836 -37153423 + (CA)n Simple_repeat Simple_repeat 1 80 0 7 1465 1439 78 5 0 chr5 115383859 115384051 -37153208 - B2_Mm1a SINE B2 0 193 1 7 1465 1437 58 17 0 chr5 115384051 115384225 -37153034 - B2_Mm2 SINE B2 -17 178 2 7 1465 2217 111 26 68 chr5 115384332 115384717 -37152542 - MTB_Mm LTR MaLR 0 407 39 7 1465 489 165 24 0 chr5 115385308 115385393 -37151866 + PB1D9 SINE Alu 18 104 -16 7 1465 516 93 0 0 chr5 115385393 115385468 -37151791 + (GA)n Simple_repeat Simple_repeat 1 75 0 7 1465 325 305 99 0 chr5 115385475 115385606 -37151653 + MIR SINE MIR 112 255 -7 7 1465 823 190 29 7 chr5 115386235 115386373 -37150886 - B1_Mur2 SINE Alu -7 142 2 7 1465 189 229 59 59 chr5 115386690 115386741 -37150518 + L2b LINE L2 3314 3364 -11 7 1465 308 238 12 0 chr5 115386742 115386826 -37150433 + GA-rich Low_complexity Low_complexity 1 85 0 7 1465 582 281 124 12 chr5 115387707 115387948 -37149311 + MER89 LTR ERV1 292 559 0 7 1465 1019 75 67 0 chr5 115388053 115388187 -37149072 + B1_Mus2 SINE Alu 3 145 -2 7 1465 198 0 0 0 chr5 115388187 115388209 -37149050 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 7 1465 655 271 115 0 chr5 115388380 115388572 -37148687 + ID_B1 SINE B4 2 215 -9 7 1465 376 311 155 53 chr5 115388600 115388914 -37148345 - MLT1A0 LTR MaLR 0 408 2 7 1465 863 178 0 14 chr5 115388940 115389088 -37148171 + B1_Mus1 SINE Alu 1 146 -2 7 1465 1341 91 43 0 chr5 115389091 115389277 -37147982 + B2_Mm2 SINE B2 2 195 0 7 1465 490 254 58 25 chr5 115389304 115389425 -37147834 - B3 SINE B2 -7 209 85 7 1465 420 265 15 7 chr5 115389451 115389588 -37147671 - RCHARR1 DNA MER1_type -11 963 826 7 1465 350 273 0 0 chr5 115389591 115389657 -37147602 + RSINE1 SINE B4 5 70 -95 7 1465 1115 39 247 0 chr5 115389671 115389825 -37147434 + B2_Mm2 SINE B2 1 192 -3 7 1465 1119 75 7 7 chr5 115389843 115389990 -37147269 + B1_Mus1 SINE Alu 1 147 -1 7 1465 1273 41 0 0 chr5 115390006 115390152 -37147107 + B1_Mm SINE Alu 2 147 0 7 1465 335 83 23 45 chr5 115390152 115390240 -37147019 + A-rich Low_complexity Low_complexity 2 87 0 8 1465 252 242 61 31 chr5 115390324 115390422 -37146837 - RCHARR1 DNA MER1_type -111 863 763 7 1465 411 310 44 0 chr5 115390402 115390515 -37146744 + B1F2 SINE Alu 24 141 -8 8 1465 824 85 139 0 chr5 115390526 115390655 -37146604 + B1_Mus2 SINE Alu 1 147 0 8 1465 1593 261 81 11 chr5 115390814 115391243 -37146016 - RCHARR1 DNA MER1_type -176 798 338 7 1465 1325 67 44 11 chr5 115391243 115391424 -37145835 + B2_Mm2 SINE B2 2 188 -7 8 1465 1138 82 0 20 chr5 115391428 115391578 -37145681 + B1_Mus1 SINE Alu 2 148 0 8 1465 193 236 50 101 chr5 115391738 115391837 -37145422 - L3 LINE CR1 -3543 946 853 8 1465 21 0 0 0 chr5 115391847 115391868 -37145391 + AT_rich Low_complexity Low_complexity 1 21 0 8 1465 210 208 0 0 chr5 115391980 115392028 -37145231 + GA-rich Low_complexity Low_complexity 1 48 0 8 1465 380 337 32 55 chr5 115392794 115393011 -37144248 + Charlie4a DNA MER1_type 24 235 -273 8 1465 345 287 121 9 chr5 115393094 115393210 -37144049 + RSINE1 SINE B4 4 132 -33 8 1465 180 0 0 0 chr5 115393273 115393293 -37143966 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 8 1465 847 206 7 0 chr5 115393293 115393429 -37143830 - B1_Mur2 SINE Alu -12 137 1 8 1465 350 203 87 0 chr5 115393512 115393581 -37143678 - RSINE1 SINE B4 -83 82 8 8 1465 200 208 137 59 chr5 115394276 115394378 -37142881 + L2a LINE L2 3048 3157 -269 8 1465 1599 32 11 0 chr5 115394505 115394693 -37142566 - B2_Mm1t SINE B2 -2 191 2 8 1465 2347 61 219 0 chr5 115394780 115395108 -37142151 + MTB LTR MaLR 1 400 0 8 1465 222 289 0 0 chr5 115395375 115395427 -37141832 + PB1D10 SINE Alu 61 112 -5 8 1465 1226 61 0 0 chr5 115395432 115395579 -37141680 + B1_Mus2 SINE Alu 1 147 0 8 1465 223 336 47 34 chr5 115395586 115395734 -37141525 + MIR SINE MIR 76 225 -37 8 1465 215 291 78 0 chr5 115395866 115395969 -37141290 - L2b LINE L2 0 3375 3265 8 1465 222 341 11 23 chr5 115396128 115396215 -37141044 - B1F1 SINE Alu -61 88 3 8 1465 807 150 45 0 chr5 115396666 115396799 -37140460 + B1_Mur3 SINE Alu 3 141 -8 8 1465 342 0 0 0 chr5 115396911 115396949 -37140310 + (CA)n Simple_repeat Simple_repeat 2 39 0 8 1465 188 411 42 21 chr5 115397470 115397614 -37139645 - MIR SINE MIR -79 183 37 8 1465 229 319 0 0 chr5 115398672 115398741 -37138518 - ID4_ SINE ID -8 75 7 8 1465 1183 75 7 0 chr5 115400313 115400460 -37136799 + B1_Mus1 SINE Alu 1 148 0 8 1465 267 31 0 0 chr5 115401674 115401706 -37135553 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1465 429 222 71 36 chr5 115401958 115402070 -37135189 - B4 SINE B4 -94 198 83 8 1465 503 310 41 61 chr5 115404178 115404215 -37133044 + MER2 DNA MER2_type 1 29 -316 8 1465 1208 91 68 6 chr5 115404215 115404392 -37132867 - B2_Mm2 SINE B2 -6 189 2 8 1465 503 310 41 61 chr5 115404392 115404550 -37132709 + MER2 DNA MER2_type 30 192 -153 8 1465 378 0 0 0 chr5 115405003 115405045 -37132214 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1465 247 287 113 31 chr5 115405544 115405641 -37131618 + MIRb SINE MIR 20 124 -144 8 1465 349 285 52 105 chr5 115406158 115406311 -37130948 + ID_B1 SINE B4 17 161 -63 8 1465 394 176 0 0 chr5 115406247 115406317 -37130942 + B1_Mur4 SINE Alu 20 90 -60 8 1465 183 42 0 0 chr5 115406482 115406506 -37130753 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1465 362 273 34 0 chr5 115406532 115406620 -37130639 - B3A SINE B2 -81 117 27 8 1465 387 230 220 0 chr5 115406622 115406722 -37130537 - B1_Mur2 SINE Alu -26 123 2 8 1465 432 320 87 19 chr5 115406745 115406952 -37130307 + L1ME3A LINE L1 5376 5596 -577 8 1465 358 298 143 45 chr5 115406970 115407088 -37130171 + L1ME3A LINE L1 5650 5768 -394 8 1465 2471 35 0 0 chr5 115407088 115407376 -37129883 + L1Md_F2 LINE L1 6283 6570 -12 8 1465 335 23 23 0 chr5 115407376 115407420 -37129839 + (TA)n Simple_repeat Simple_repeat 1 45 0 8 1465 358 279 173 48 chr5 115407420 115407613 -37129646 + L1ME3A LINE L1 5769 5995 -178 8 1465 596 279 14 0 chr5 115407689 115407836 -37129423 + B1F SINE Alu 1 149 0 8 1465 622 161 16 9 chr5 115407841 115407968 -37129291 + B1_Mur2 SINE Alu 8 148 -1 8 1465 21 0 0 0 chr5 115408050 115408071 -37129188 + AT_rich Low_complexity Low_complexity 1 21 0 8 1465 251 376 22 22 chr5 115408095 115408231 -37129028 + MLT1K LTR MaLR 283 418 -177 8 1465 536 254 29 29 chr5 115408241 115408379 -37128880 + ID_B1 SINE B4 87 224 0 8 1465 1268 128 0 16 chr5 115408530 115408721 -37128538 + B2_Mm2 SINE B2 2 189 -6 8 1465 1257 78 0 6 chr5 115408758 115408926 -37128333 + B2_Mm2 SINE B2 2 168 -27 8 1465 361 229 95 32 chr5 115408959 115409085 -37128174 - Lx6 LINE L1 -242 7218 7085 8 1465 518 240 0 0 chr5 115409277 115409381 -37127878 + PB1D10 SINE Alu 6 109 -8 8 1465 230 274 220 8 chr5 115409381 115409395 -37127864 + B4A SINE B4 91 233 -59 8 1465 213 288 41 0 chr5 115409497 115409570 -37127689 + L2a LINE L2 3021 3096 -330 8 1465 211 341 43 43 chr5 115409622 115409714 -37127545 + L2a LINE L2 3265 3356 -19 8 1465 181 296 31 108 chr5 115409745 115409874 -37127385 + L2c LINE L2 3241 3359 -28 8 1465 279 173 0 0 chr5 115410433 115410485 -37126774 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1465 412 283 29 70 chr5 115410514 115410685 -37126574 - RSINE1 SINE B4 0 165 2 8 1465 1065 123 8 16 chr5 115410786 115411153 -37126106 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 8 1465 1628 196 110 24 chr5 115411173 115411367 -37125892 + MTD LTR MaLR 3 209 -210 8 1465 1722 21 0 0 chr5 115411367 115411559 -37125700 + B2_Mm1a SINE B2 2 193 0 8 1465 1628 196 110 24 chr5 115411559 115411746 -37125513 + MTD LTR MaLR 210 417 -2 8 1465 277 347 6 39 chr5 115411746 115411881 -37125378 + (TGGA)n Simple_repeat Simple_repeat 1 132 0 8 1465 261 0 0 0 chr5 115411881 115411910 -37125349 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 8 1465 277 347 6 39 chr5 115411910 115411930 -37125329 + (TGGA)n Simple_repeat Simple_repeat 1 19 0 8 1465 182 159 32 0 chr5 115412413 115412476 -37124783 + (CAGAGA)n Simple_repeat Simple_repeat 4 68 0 8 1465 349 321 12 0 chr5 115412949 115413033 -37124226 + PB1D10 SINE Alu 6 90 -27 8 1465 498 282 46 0 chr5 115413073 115413204 -37124055 + ID_B1 SINE B4 87 223 -1 8 1465 316 47 23 0 chr5 115413208 115413251 -37124008 - HAL1-3A_ME LINE L1 -838 2020 1977 8 1465 225 191 47 9 chr5 115413253 115413359 -37123900 + (TG)n Simple_repeat Simple_repeat 1 110 0 8 1465 274 211 0 19 chr5 115413608 115413661 -37123598 + B1F SINE Alu 93 144 -5 8 1465 279 0 0 0 chr5 115413661 115413692 -37123567 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1465 2616 103 81 9 chr5 115413702 115414123 -37123136 + L1_Mus4 LINE L1 6186 6636 0 8 1465 436 317 14 7 chr5 115414179 115414325 -37122934 + B3A SINE B2 34 180 -18 8 1465 387 216 261 0 chr5 115414373 115414484 -37122775 + B1_Mur1 SINE Alu 3 142 -7 8 1465 1073 118 159 5 chr5 115414855 115415050 -37122209 + URR1B DNA MER1_type 1 225 0 8 1465 232 302 25 16 chr5 115415608 115415729 -37121530 + CT-rich Low_complexity Low_complexity 2 123 0 8 1465 274 234 31 0 chr5 115415618 115415682 -37121577 + C-rich Low_complexity Low_complexity 4 69 0 8 1465 365 232 90 10 chr5 115415848 115415948 -37121311 - PB1D9 SINE Alu -9 111 4 8 1465 227 257 42 14 chr5 115415992 115416004 -37121255 + ID SINE ID 70 83 -141 8 1465 273 219 47 0 chr5 115416004 115416068 -37121191 + B1F1 SINE Alu 1 67 -82 8 1465 228 135 0 0 chr5 115416103 115416140 -37121119 + (CCA)n Simple_repeat Simple_repeat 1 37 0 8 1465 232 312 133 45 chr5 115416314 115416467 -37120792 + MIRb SINE MIR 3 172 -96 8 1465 244 224 191 15 chr5 115416467 115416535 -37120724 + ID4_ SINE ID 3 82 -1 8 1465 968 150 14 0 chr5 115416544 115416691 -37120568 + B1_Mur3 SINE Alu 1 149 0 8 1465 518 302 24 0 chr5 115416704 115416830 -37120429 + ID_B1 SINE B4 82 210 -14 8 1465 514 232 4 4 chr5 115416849 115417092 -37120167 + (TG)n Simple_repeat Simple_repeat 1 243 0 8 1465 276 227 0 0 chr5 115417107 115417195 -37120064 + (TG)n Simple_repeat Simple_repeat 1 88 0 8 1465 237 273 12 26 chr5 115417450 115417532 -37119727 + MIRm SINE MIR 94 174 -94 8 1465 198 206 51 110 chr5 115418313 115418396 -37118863 - MIRm SINE MIR -156 120 40 8 1465 216 305 0 72 chr5 115418814 115418952 -37118307 + CT-rich Low_complexity Low_complexity 2 129 0 8 1465 180 129 32 0 chr5 115419479 115419510 -37117749 + MIRc SINE MIR 112 143 -125 8 1465 401 203 5 15 chr5 115421591 115421799 -37115460 + (TG)n Simple_repeat Simple_repeat 1 205 0 8 1465 252 0 0 0 chr5 115421824 115421852 -37115407 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 8 1465 786 235 35 0 chr5 115421859 115422029 -37115230 - ID_B1 SINE B4 -48 176 1 8 1465 386 216 9 102 chr5 115422118 115422226 -37115033 - RSINE1 SINE B4 0 165 68 8 1465 242 330 0 22 chr5 115422550 115422640 -37114619 - L1MD LINE L1 -2262 5733 5646 8 1465 1076 58 56 28 chr5 115422651 115422793 -37114466 + B1_Mus1 SINE Alu 3 148 0 8 1465 205 77 0 71 chr5 115422794 115422836 -37114423 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 8 1465 1163 75 0 0 chr5 115422910 115423056 -37114203 + B1_Mm SINE Alu 2 147 0 8 1465 237 33 0 0 chr5 115423062 115423092 -37114167 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 1465 241 250 64 55 chr5 115423420 115423530 -37113729 + MER3 DNA MER1_type 42 152 -57 8 1465 231 253 101 51 chr5 115423555 115423634 -37113625 + ID4 SINE ID 1 83 0 8 1465 859 189 190 22 chr5 115423646 115423830 -37113429 + B3 SINE B2 2 216 0 8 1465 284 188 39 29 chr5 115423896 115424000 -37113259 + (TTATA)n Simple_repeat Simple_repeat 2 106 0 8 1465 1759 186 118 8 chr5 115424012 115424376 -37112883 + MTD LTR MaLR 1 404 -15 8 1465 1368 75 32 0 chr5 115424394 115424420 -37112839 - B2_Mm2 SINE B2 -1 194 163 9 1465 515 85 0 12 chr5 115424420 115424503 -37112756 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 9 1465 1368 75 32 0 chr5 115424503 115424662 -37112597 - B2_Mm2 SINE B2 -33 162 4 9 1465 347 73 18 0 chr5 115424662 115424717 -37112542 + (TATG)n Simple_repeat Simple_repeat 3 58 0 9 1465 322 268 27 142 chr5 115424729 115424877 -37112382 - RSINE1 SINE B4 -28 137 7 9 1465 804 145 7 14 chr5 115424882 115425021 -37112238 - B1_Mur2 SINE Alu 0 149 12 9 1465 1329 69 29 0 chr5 115425061 115425234 -37112025 - B2_Mm2 SINE B2 -7 188 11 9 1465 1231 61 0 0 chr5 115425252 115425399 -37111860 - B1_Mus1 SINE Alu 0 148 2 9 1465 413 288 45 9 chr5 115425403 115425515 -37111744 - PB1D10 SINE Alu 0 117 2 9 1465 447 247 0 21 chr5 115425543 115425638 -37111621 + ID_B1 SINE B4 124 216 -8 9 1465 467 250 94 89 chr5 115425678 115425858 -37111401 + MTEb LTR MaLR 195 375 -4 9 1465 388 241 32 57 chr5 115425887 115426010 -37111249 + L2a LINE L2 3303 3422 -4 9 1465 299 206 47 12 chr5 115426092 115426264 -37110995 + (TG)n Simple_repeat Simple_repeat 1 178 0 9 1465 185 265 116 14 chr5 115426548 115426617 -37110642 - MIR SINE MIR -79 183 108 9 1465 577 217 255 16 chr5 115426783 115426975 -37110284 - ORR1D2 LTR MaLR -132 238 1 9 1465 369 308 33 0 chr5 115426975 115427065 -37110194 - B1F2 SINE Alu -16 133 41 9 1465 424 290 16 39 chr5 115427069 115427165 -37110094 - B3A SINE B2 -72 126 35 9 1465 845 110 288 0 chr5 115427165 115427311 -37109948 + B2_Mm2 SINE B2 3 190 -5 9 1465 424 290 16 39 chr5 115427311 115427343 -37109916 - B3A SINE B2 -164 34 1 9 1465 225 0 0 0 chr5 115427412 115427437 -37109822 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 9 1465 922 111 0 0 chr5 115427437 115427563 -37109696 - B1_Mus2 SINE Alu -13 134 9 9 1465 251 85 21 0 chr5 115427602 115427649 -37109610 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 9 1465 279 269 26 69 chr5 115427737 115427853 -37109406 - ID_B1 SINE B4 -7 217 107 9 1465 338 200 191 43 chr5 115427936 115428051 -37109208 - B1F2 SINE Alu 0 149 18 9 1465 235 167 19 0 chr5 115428333 115428387 -37108872 + (TTTG)n Simple_repeat Simple_repeat 3 57 0 9 1465 287 116 0 0 chr5 115428528 115428571 -37108688 - B1_Mus1 SINE Alu -104 44 2 9 1465 242 257 0 91 chr5 115428571 115428605 -37108654 - B4 SINE B4 -164 128 59 9 1465 480 78 46 0 chr5 115428851 115428957 -37108302 - B2_Mm2 SINE B2 0 195 47 9 1465 1113 81 62 0 chr5 115428974 115429134 -37108125 - B2_Mm1t SINE B2 -22 171 2 9 1465 335 193 0 0 chr5 115429167 115429224 -37108035 - RSINE1 SINE B4 -28 137 81 9 1465 958 252 55 8 chr5 115429705 115429961 -37107298 + B4A SINE B4 2 269 -23 9 1465 194 143 20 0 chr5 115430889 115430938 -37106321 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 9 1465 26 30 0 0 chr5 115430940 115430973 -37106286 + AT_rich Low_complexity Low_complexity 1 33 0 9 1465 386 237 15 139 chr5 115430973 115431110 -37106149 + PB1 SINE Alu 1 120 -7 9 1465 399 235 201 32 chr5 115431222 115431411 -37105848 + ID_B1 SINE B4 3 223 -1 9 1465 228 135 0 0 chr5 115431469 115431506 -37105753 + (TCC)n Simple_repeat Simple_repeat 3 39 0 9 1465 1213 55 14 0 chr5 115431631 115431776 -37105483 + B1_Mus1 SINE Alu 2 148 0 9 1465 865 212 127 0 chr5 115431779 115432024 -37105235 - ORR1D1 LTR MaLR -58 316 41 9 1465 299 272 86 26 chr5 115432229 115432346 -37104913 + MER5A DNA MER1_type 31 154 -35 9 1465 634 115 0 10 chr5 115432468 115432565 -37104694 + B1_Mur4 SINE Alu 42 137 -13 9 1465 218 56 0 27 chr5 115432568 115432605 -37104654 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 9 1465 572 279 0 14 chr5 115432643 115432781 -37104478 - RSINE1 SINE B4 -28 137 2 9 1465 292 146 54 18 chr5 115432793 115432849 -37104410 - B1_Mur2 SINE Alu 0 149 92 9 1465 581 180 43 79 chr5 115433086 115433225 -37104034 + RSINE1 SINE B4 4 137 -28 9 1465 1370 57 17 6 chr5 115433344 115433520 -37103739 - B2_Mm2 SINE B2 -16 179 2 9 1465 859 214 90 5 chr5 115433545 115433733 -37103526 - B3 SINE B2 -4 212 9 9 1465 397 293 168 37 chr5 115433747 115433938 -37103321 - ID_B1 SINE B4 -8 216 1 9 1465 317 195 116 37 chr5 115433952 115434073 -37103186 - B1F SINE Alu 0 120 1 9 1465 449 250 45 96 chr5 115434017 115434093 -37103166 + MT2B LTR ERVL 97 175 -426 9 1465 477 0 0 0 chr5 115434093 115434146 -37103113 + (GA)n Simple_repeat Simple_repeat 2 54 0 9 1465 449 250 45 96 chr5 115434146 115434246 -37103013 + MT2B LTR ERVL 176 263 -338 9 1465 1123 22 8 0 chr5 115434246 115434280 -37102979 + B1_Mm SINE Alu 13 147 0 9 1465 186 43 0 0 chr5 115434284 115434307 -37102952 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1465 677 186 8 0 chr5 115434937 115435055 -37102204 - B1_Mur3 SINE Alu -29 120 2 9 1465 204 217 0 0 chr5 115435128 115435174 -37102085 + A-rich Low_complexity Low_complexity 1 46 0 9 1465 781 154 42 71 chr5 115435174 115435342 -37101917 - B2_Mm2 SINE B2 -32 163 1 9 1465 198 106 20 41 chr5 115435394 115435443 -37101816 + (GTTTG)n Simple_repeat Simple_repeat 5 52 0 9 1465 351 150 0 0 chr5 115435502 115435562 -37101697 + (TG)n Simple_repeat Simple_repeat 2 61 0 9 1465 324 284 0 0 chr5 115435571 115435645 -37101614 - B4 SINE B4 -2 290 217 9 1465 744 283 99 20 chr5 115435696 115435948 -37101311 - B4A SINE B4 -20 272 1 9 1465 341 261 18 100 chr5 115435948 115436090 -37101169 - B4 SINE B4 -65 227 100 9 1465 1210 78 71 86 chr5 115436157 115436313 -37100946 + B2_Mm2 SINE B2 1 169 -26 9 1465 945 87 63 35 chr5 115436313 115436456 -37100803 + B1_Mus2 SINE Alu 1 147 0 9 1465 1210 78 71 86 chr5 115436456 115436496 -37100763 + B2_Mm2 SINE B2 170 194 -1 9 1465 1524 36 0 103 chr5 115436654 115436868 -37100391 - B2_Mm1a SINE B2 0 193 2 9 1465 308 269 61 34 chr5 115436871 115436989 -37100270 - B1F2 SINE Alu -1 119 1 9 1465 227 257 97 71 chr5 115436894 115437007 -37100252 - B4 SINE B4 -105 187 72 9 1465 427 253 20 5 chr5 115437005 115437129 -37100130 - PB1D9 SINE Alu -1 119 1 9 1465 271 304 191 0 chr5 115437337 115437452 -37099807 - MLT1A LTR MaLR -2 372 236 9 1465 4614 119 70 129 chr5 115437505 115437938 -37099321 - RMER17A2 LTR ERVK 0 906 569 9 1465 207 0 0 0 chr5 115437938 115437961 -37099298 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1465 4614 119 70 129 chr5 115437961 115438490 -37098769 - RMER17A2 LTR ERVK -338 568 1 9 1465 1213 128 0 0 chr5 115438528 115438700 -37098559 + B2_Mm2 SINE B2 1 172 -23 9 1465 315 0 0 0 chr5 115438700 115438735 -37098524 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 9 1465 853 185 46 0 chr5 115438736 115438887 -37098372 + B3 SINE B2 57 214 -2 9 1465 260 237 28 102 chr5 115438895 115439003 -37098256 + MT2B LTR ERVL 151 250 -351 9 1465 687 179 7 136 chr5 115438917 115439072 -37098187 + B1_Mus2 SINE Alu 9 143 -4 9 1465 716 302 133 42 chr5 115439092 115440164 -37097095 + L1MC4 LINE L1 723 1343 -4872 9 1465 3625 64 0 15 chr5 115440164 115440623 -37096636 + L1Md_F2 LINE L1 6130 6581 -1 9 1465 692 322 138 30 chr5 115440623 115441137 -37096122 + L1MC4 LINE L1 830 1334 -4881 9 1465 1043 73 73 0 chr5 115441142 115441278 -37095981 + B1_Mm SINE Alu 2 147 0 9 1465 294 95 0 0 chr5 115441278 115441320 -37095939 + (A)n Simple_repeat Simple_repeat 1 42 0 9 1465 325 271 46 0 chr5 115442064 115442169 -37095090 + PB1D10 SINE Alu 1 121 -6 9 1465 229 346 13 0 chr5 115442181 115442259 -37095000 + ID4 SINE ID 2 80 -3 9 1465 761 203 74 0 chr5 115442291 115442439 -37094820 + RSINE1 SINE B4 1 159 -6 9 1465 262 305 0 0 chr5 115442457 115442516 -37094743 + RSINE1 SINE B4 107 165 0 9 1465 209 59 0 56 chr5 115442516 115442552 -37094707 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 9 1465 1260 48 0 0 chr5 115442584 115442730 -37094529 + B1_Mm SINE Alu 2 147 0 9 1465 342 304 109 24 chr5 115442770 115442935 -37094324 - L1M5 LINE L1 -352 5772 5594 9 1465 1228 55 0 14 chr5 115442936 115443084 -37094175 - B1_Mus2 SINE Alu 0 147 2 9 1465 364 291 68 0 chr5 115443393 115443496 -37093763 + ID_B1 SINE B4 77 186 -38 9 1465 447 222 205 0 chr5 115443963 115444080 -37093179 + RSINE1 SINE B4 4 144 -21 9 1465 1063 37 66 0 chr5 115444347 115444483 -37092776 - B1_Mm SINE Alu 0 147 3 9 1465 578 250 35 69 chr5 115444483 115444551 -37092708 - B4 SINE B4 -203 89 29 9 1465 457 324 93 37 chr5 115444519 115444734 -37092525 - Tigger5 DNA MER2_type -17 2389 2163 9 1465 1210 98 6 6 chr5 115444709 115444883 -37092376 - B2_Mm2 SINE B2 -20 175 2 9 1465 818 147 51 7 chr5 115444916 115445053 -37092206 - B1_Mus1 SINE Alu -1 147 5 9 1465 221 200 0 48 chr5 115445102 115445144 -37092115 + B1F2 SINE Alu 24 63 -86 9 1465 230 152 0 0 chr5 115445112 115445145 -37092114 + PB1D9 SINE Alu 32 64 -56 9 1465 309 68 0 0 chr5 115445151 115445195 -37092064 + (TC)n Simple_repeat Simple_repeat 2 45 0 9 1465 619 210 127 35 chr5 115445230 115445403 -37091856 + B3A SINE B2 2 190 -8 9 1465 270 214 641 78 chr5 115445450 115445584 -37091675 + B3 SINE B2 2 210 -6 9 1465 486 256 43 14 chr5 115445615 115445754 -37091505 + B1F SINE Alu 5 147 -2 9 1465 687 95 23 53 chr5 115445916 115445937 -37091322 - BC1_Mm scRNA scRNA -23 129 109 9 1465 1130 29 66 0 chr5 115445937 115446074 -37091185 - B1_Mus2 SINE Alu 0 147 2 9 1465 687 95 23 53 chr5 115446074 115446185 -37091074 - BC1_Mm scRNA scRNA -44 108 1 9 1465 1200 61 0 0 chr5 115446381 115446529 -37090730 - B1_Mus1 SINE Alu 0 148 1 9 1465 612 248 68 39 chr5 115446561 115446767 -37090492 + B4A SINE B4 1 212 -80 9 1465 329 282 118 0 chr5 115446761 115446871 -37090388 - B4A SINE B4 -166 126 4 9 1465 816 154 14 41 chr5 115446948 115447107 -37090152 - B1_Mur4 SINE Alu -1 149 1 1 1465 360 0 0 0 chr5 115447117 115447157 -37090102 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1465 369 0 0 0 chr5 115447157 115447197 -37090062 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1465 198 0 0 0 chr5 115447340 115447362 -37089897 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1465 1352 79 17 6 chr5 115447864 115448043 -37089216 + B2_Mm2 SINE B2 1 181 -14 1 1465 763 282 0 11 chr5 115448206 115448389 -37088870 + B3A SINE B2 2 182 -16 1 1465 950 99 0 0 chr5 115448616 115448747 -37088512 - B1_Mus1 SINE Alu -16 132 2 1 1465 238 215 23 102 chr5 115448958 115449046 -37088213 + MIR SINE MIR 72 152 -124 1 1465 991 76 69 0 chr5 115449153 115449284 -37087975 + B1_Mus1 SINE Alu 1 140 -8 1 1465 416 224 24 0 chr5 115449298 115449383 -37087876 + B1_Mur1 SINE Alu 46 132 -17 1 1465 434 232 24 71 chr5 115449848 115449999 -37087260 + B4A SINE B4 81 231 -61 1 1465 343 243 27 72 chr5 115450038 115450149 -37087110 + RSINE1 SINE B4 17 122 -43 1 1465 390 294 78 0 chr5 115450325 115450427 -37086832 - RSINE1 SINE B4 -2 163 54 1 1465 287 316 72 84 chr5 115450822 115450875 -37086384 + MT2B2 LTR ERVL 112 162 -422 1 1465 551 275 35 21 chr5 115450875 115451020 -37086239 + B1F SINE Alu 3 149 0 1 1465 367 202 0 51 chr5 115451063 115451152 -37086107 + B1F2 SINE Alu 56 139 -10 1 1465 213 65 0 0 chr5 115451169 115451200 -37086059 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1465 184 277 78 78 chr5 115452081 115452210 -37085049 + MIR SINE MIR 48 176 -86 1 1465 259 204 18 64 chr5 115452229 115452339 -37084920 - Lx9 LINE L1 0 7644 7540 1 1465 258 207 0 0 chr5 115452528 115452586 -37084673 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 1 1465 1090 233 0 18 chr5 115453609 115453828 -37083431 + B3 SINE B2 2 216 0 1 1465 395 231 0 133 chr5 115453836 115453956 -37083303 + MT2B LTR ERVL 154 257 -344 1 1465 713 201 37 0 chr5 115453862 115453996 -37083263 + B1_Mur2 SINE Alu 11 149 0 1 1465 341 274 70 50 chr5 115454019 115454119 -37083140 + B3A SINE B2 49 150 -48 1 1465 213 284 70 58 chr5 115454745 115454831 -37082428 + MIR SINE MIR 42 128 -134 1 1465 261 301 30 8 chr5 115454877 115455011 -37082248 + B1F SINE Alu 1 137 -12 1 1465 816 75 0 0 chr5 115455107 115455214 -37082045 + B1_Mus1 SINE Alu 11 117 -31 1 1465 298 303 135 19 chr5 115455312 115455571 -37081688 + L1M5 LINE L1 2597 2885 -3261 1 1465 345 273 30 0 chr5 115455583 115455682 -37081577 + L1MC1 LINE L1 5651 5752 -592 1 1465 379 293 114 0 chr5 115455849 115455972 -37081287 - RSINE1 SINE B4 -28 137 1 1 1465 710 267 78 10 chr5 115455973 115456166 -37081093 - ID_B1 SINE B4 -5 219 14 1 1465 956 174 113 10 chr5 115456305 115456508 -37080751 - URR1A DNA MER1_type 0 226 3 1 1465 1116 84 0 0 chr5 115456637 115456779 -37080480 - B1_Mus1 SINE Alu -5 143 2 1 1465 471 298 61 61 chr5 115456935 115457164 -37080095 + L1MC1 LINE L1 5885 6113 -220 1 1465 327 272 31 10 chr5 115457266 115457379 -37079880 - ID4 SINE ID -27 125 12 1 1465 301 155 16 49 chr5 115457405 115457466 -37079793 + RSINE1 SINE B4 54 112 -53 1 1465 481 32 0 0 chr5 115458728 115458790 -37078469 + B1_Mus2 SINE Alu 3 64 -83 1 1465 1212 34 7 7 chr5 115458798 115458945 -37078314 - B1_Mus2 SINE Alu 0 147 1 1 1465 396 143 0 0 chr5 115458995 115459065 -37078194 + (A)n Simple_repeat Simple_repeat 1 70 0 1 1465 457 207 198 20 chr5 115460155 115460344 -37076915 - L1MC1 LINE L1 -289 6044 5821 1 1465 730 157 91 0 chr5 115460344 115460465 -37076794 - B1_Mur1 SINE Alu -15 134 3 1 1465 21 36 0 0 chr5 115461050 115461078 -37076181 + GC_rich Low_complexity Low_complexity 1 28 0 1 1465 262 143 0 31 chr5 115461207 115461272 -37075987 + (CCG)n Simple_repeat Simple_repeat 2 64 0 1 1465 207 233 13 27 chr5 115461347 115461422 -37075837 + (CCG)n Simple_repeat Simple_repeat 1 74 0 1 1465 23 68 0 0 chr5 115461430 115461474 -37075785 + GC_rich Low_complexity Low_complexity 1 44 0 1 1465 25 0 0 0 chr5 115461530 115461555 -37075704 + GC_rich Low_complexity Low_complexity 1 25 0 1 1465 180 0 0 0 chr5 115461651 115461671 -37075588 + (CCGGG)n Simple_repeat Simple_repeat 4 23 0 1 1465 206 293 89 20 chr5 115463638 115463739 -37073520 - MIRb SINE MIR -61 207 100 1 1465 1296 76 31 31 chr5 115463866 115464057 -37073202 - B2_Mm2 SINE B2 -3 192 2 1 1465 199 317 98 0 chr5 115464190 115464272 -37072987 + L3b LINE CR1 227 316 -166 1 1465 220 261 43 14 chr5 115464550 115464620 -37072639 + MIRm SINE MIR 172 243 -33 1 1465 210 262 31 47 chr5 115464590 115464654 -37072605 + L2b LINE L2 3311 3373 -2 1 1465 330 312 63 47 chr5 115464726 115464868 -37072391 - B1F SINE Alu -1 148 5 1 1465 759 42 0 0 chr5 115464966 115465061 -37072198 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 1 1465 389 268 41 82 chr5 115465093 115465264 -37071995 - ID_B1 SINE B4 -60 164 1 1 1465 558 145 72 9 chr5 115465871 115465982 -37071277 + B1_Mur2 SINE Alu 27 144 -5 1 1465 1062 66 0 0 chr5 115466549 115466685 -37070574 - B1_Mus1 SINE Alu 0 148 13 1 1465 347 262 26 1 chr5 115466847 115466943 -37070316 - B1_Mm SINE Alu -14 103 5 1 1465 519 177 105 23 chr5 115467082 115467215 -37070044 - B1_Mus1 SINE Alu -1 147 4 1 1465 210 274 68 14 chr5 115467815 115467889 -37069370 - BC1_Mm scRNA scRNA -70 82 5 1 1465 496 0 31 0 chr5 115467891 115467955 -37069304 + (CCA)n Simple_repeat Simple_repeat 1 66 0 1 1465 1348 99 39 0 chr5 115469532 115469714 -37067545 - B2_Mm2 SINE B2 -5 190 2 1 1465 1073 51 51 0 chr5 115469867 115470004 -37067255 + B1_Mm SINE Alu 1 144 -3 1 1465 250 296 191 82 chr5 115470052 115470199 -37067060 - RSINE1 SINE B4 0 165 3 1 1465 788 132 8 30 chr5 115470395 115470528 -37066731 - B1_Mus1 SINE Alu 0 148 19 1 1465 329 323 46 97 chr5 115470528 115470566 -37066693 - B4 SINE B4 -63 225 64 1 1465 210 56 139 0 chr5 115470859 115470895 -37066364 - ID SINE ID -182 42 2 1 1465 471 224 0 53 chr5 115470922 115471035 -37066224 - B3 SINE B2 0 216 110 1 1465 294 152 0 0 chr5 115471075 115471121 -37066138 - B1_Mur2 SINE Alu -21 128 83 1 1465 487 250 36 27 chr5 115471218 115471329 -37065930 - RSINE1 SINE B4 -1 164 53 1 1465 201 114 22 22 chr5 115471526 115471571 -37065688 + T-rich Low_complexity Low_complexity 1 45 0 1 1465 1121 55 7 27 chr5 115471572 115471721 -37065538 - B1_Mus1 SINE Alu -1 147 2 1 1465 299 337 0 19 chr5 115471810 115471916 -37065343 - B4A SINE B4 -139 153 50 1 1465 400 287 35 9 chr5 115472486 115472602 -37064657 - ID_B1 SINE B4 -8 216 98 1 1465 390 258 13 186 chr5 115472670 115472840 -37064419 - B1F1 SINE Alu -8 141 1 1 1465 1223 48 0 0 chr5 115472960 115473106 -37064153 - B1_Mus2 SINE Alu 0 147 2 1 1465 384 231 59 10 chr5 115473192 115473310 -37063949 - PB1D10 SINE Alu -22 125 2 1 1465 1374 85 21 0 chr5 115473349 115473538 -37063721 - B2_Mm2 SINE B2 -2 193 1 1 1465 186 222 0 0 chr5 115473810 115473864 -37063395 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1465 402 21 0 0 chr5 115473980 115474027 -37063232 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1465 1158 88 0 0 chr5 115474028 115474176 -37063083 - B1_Mus1 SINE Alu 0 148 1 1 1465 713 180 55 41 chr5 115474197 115474342 -37062917 - B1_Mus1 SINE Alu -1 147 1 1 1466 542 234 49 54 chr5 115474698 115474883 -37062376 - B3A SINE B2 -14 184 1 1 1466 318 297 142 32 chr5 115475318 115475537 -37061722 - L1M5 LINE L1 -2821 3325 3083 1 1466 314 115 24 49 chr5 115475537 115475619 -37061640 - RMER17C LTR ERVK -135 275 196 1 1466 192 125 0 0 chr5 115475749 115475781 -37061478 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 1 1466 738 216 15 7 chr5 115476688 115476823 -37060436 + B1_Mur4 SINE Alu 9 144 -6 1 1466 22 0 0 0 chr5 115476900 115476922 -37060337 + AT_rich Low_complexity Low_complexity 1 22 0 1 1466 486 274 144 11 chr5 115477255 115477443 -37059816 - ID_B1 SINE B4 -9 215 3 1 1466 899 187 306 34 chr5 115478546 115478840 -37058419 - ORR1D1 LTR MaLR 0 374 1 1 1466 324 190 0 0 chr5 115479797 115479855 -37057404 + B3A SINE B2 63 120 -78 1 1466 21 0 0 0 chr5 115480008 115480029 -37057230 + AT_rich Low_complexity Low_complexity 1 21 0 1 1466 676 221 22 0 chr5 115480038 115480163 -37057096 - B3 SINE B2 -1 215 88 1 1466 585 217 71 13 chr5 115480163 115480288 -37056971 + RLTR12A LTR ERVK 1 134 -434 1 1466 1786 196 138 52 chr5 115480288 115480773 -37056486 + RLTR11A LTR ERVK 2 528 0 1 1466 1582 182 93 43 chr5 115480773 115481199 -37056060 + RLTR12A LTR ERVK 121 568 0 1 1466 536 210 30 0 chr5 115481199 115481293 -37055966 - B3 SINE B2 -119 97 1 1 1466 215 159 45 0 chr5 115481971 115482015 -37055244 + B1_Mur4 SINE Alu 5 50 -100 1 1466 232 200 63 51 chr5 115482784 115482863 -37054396 + MLT2B2 LTR ERVL 5 84 -431 1 1466 193 342 89 24 chr5 115483161 115483284 -37053975 - L2b LINE L2 -17 3358 3228 1 1466 330 295 61 26 chr5 115483518 115483633 -37053626 + PB1 SINE Alu 1 119 -8 1 1466 644 248 20 7 chr5 115484096 115484242 -37053017 - B1_Mur1 SINE Alu 0 149 2 1 1466 624 250 209 26 chr5 115484740 115484974 -37052285 - B4A SINE B4 -8 284 8 1 1466 360 0 0 0 chr5 115485278 115485318 -37051941 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1466 202 104 250 0 chr5 115485622 115485670 -37051589 + L2 LINE L2 1889 1948 -1471 1 1466 697 233 8 0 chr5 115485766 115485895 -37051364 + B3 SINE B2 1 130 -86 1 1466 571 201 10 43 chr5 115486264 115486386 -37050873 + B1_Mur1 SINE Alu 26 141 -8 1 1466 332 215 112 78 chr5 115487348 115487464 -37049795 - RSINE1 SINE B4 -43 122 3 1 1466 1846 279 71 34 chr5 115487823 115488318 -37048941 - Lx8 LINE L1 -207 7266 6738 1 1466 303 193 364 0 chr5 115488318 115488406 -37048853 + PB1D9 SINE Alu 1 120 0 1 1466 1846 279 71 34 chr5 115488406 115488560 -37048699 - Lx8 LINE L1 -736 6737 6593 1 1466 816 203 92 46 chr5 115488728 115488924 -37048335 + B3 SINE B2 2 206 -10 1 1466 218 340 45 99 chr5 115489002 115489034 -37048225 + PB1D10 SINE Alu 1 105 -12 1 1466 391 213 13 51 chr5 115489034 115489113 -37048146 + ID_B1 SINE B4 137 212 -12 1 1466 21 36 0 0 chr5 115489149 115489177 -37048082 + AT_rich Low_complexity Low_complexity 1 28 0 1 1466 1410 50 39 0 chr5 115489716 115489897 -37047362 + B2_Mm2 SINE B2 1 188 -7 1 1466 393 242 186 8 chr5 115490201 115490330 -37046929 + B3 SINE B2 12 163 -53 1 1466 783 77 0 0 chr5 115491179 115491283 -37045976 - BC1_Mm scRNA scRNA -48 104 1 1 1466 661 239 126 0 chr5 115491311 115491470 -37045789 + B3 SINE B2 1 179 -37 1 1466 910 279 0 0 chr5 115491676 115491884 -37045375 + B3 SINE B2 3 210 -6 1 1466 210 351 48 101 chr5 115491952 115492161 -37045098 - L2a LINE L2 0 3426 3229 1 1466 1102 108 54 6 chr5 115492533 115492701 -37044558 + B2_Mm1t SINE B2 2 177 -16 1 1466 315 188 0 0 chr5 115492822 115492867 -37044392 + T-rich Low_complexity Low_complexity 41 85 0 1 1466 1067 45 45 0 chr5 115492867 115492999 -37044260 - B1_Mus2 SINE Alu -9 138 1 1 1466 315 188 0 0 chr5 115492999 115493038 -37044221 + T-rich Low_complexity Low_complexity 2 40 0 1 1466 456 292 65 14 chr5 115493047 115493140 -37044119 + B3 SINE B2 68 167 -49 1 1466 222 37 0 0 chr5 115493140 115493167 -37044092 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 1 1466 456 292 65 14 chr5 115493167 115493212 -37044047 + B3 SINE B2 168 212 -4 1 1466 557 139 34 34 chr5 115493478 115493597 -37043662 - PB1D7 SINE Alu -1 119 1 1 1466 531 31 0 0 chr5 115493616 115493681 -37043578 + (GGGA)n Simple_repeat Simple_repeat 2 66 0 1 1466 22 70 0 0 chr5 115493944 115493987 -37043272 + AT_rich Low_complexity Low_complexity 1 43 0 1 1466 331 319 96 0 chr5 115493996 115494131 -37043128 - RSINE1 SINE B4 -17 148 1 1 1466 298 295 95 114 chr5 115494150 115494414 -37042845 - ORR1E LTR MaLR -37 322 64 1 1466 1761 16 0 0 chr5 115494679 115494872 -37042387 - B2_Mm1a SINE B2 0 193 1 1 1466 278 210 63 16 chr5 115494976 115495039 -37042220 + tRNA-Ala-GCY_ tRNA tRNA 8 73 -2 1 1466 1975 130 19 19 chr5 115495067 115495388 -37041871 + RMER1B Other Other 581 901 -165 1 1466 180 0 0 0 chr5 115495591 115495611 -37041648 + (TAGG)n Simple_repeat Simple_repeat 2 21 0 1 1466 3489 20 8 0 chr5 115495975 115496368 -37040891 + MTA_Mm LTR MaLR 1 396 0 1 1466 258 266 92 0 chr5 115496693 115496802 -37040457 - L1MD1 LINE L1 -7 6235 6117 1 1466 5579 104 145 21 chr5 115496863 115497475 -37039784 + L1_Mm LINE L1 4009 4745 -1138 1 1466 1097 58 0 7 chr5 115497475 115497615 -37039644 + B1_Mus1 SINE Alu 1 139 -9 1 1466 219 36 0 0 chr5 115497615 115497643 -37039616 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1466 5579 104 145 21 chr5 115497643 115497958 -37039301 + L1_Mm LINE L1 4746 5051 -832 1 1466 725 113 289 0 chr5 115499109 115499251 -37038008 - B2_Mm1t SINE B2 -10 183 1 1 1466 261 160 0 62 chr5 115499356 115499436 -37037823 + (TCTCTG)n Simple_repeat Simple_repeat 6 80 0 1 1466 581 287 104 26 chr5 115499447 115499640 -37037619 - ID_B1 SINE B4 -11 213 6 1 1466 241 314 53 111 chr5 115499644 115499681 -37037578 - B3A SINE B2 0 198 3 1 1466 620 278 0 53 chr5 115499681 115499852 -37037407 - RSINE1 SINE B4 0 165 4 1 1466 318 50 0 0 chr5 115499923 115499963 -37037296 + (CACCC)n Simple_repeat Simple_repeat 3 42 0 1 1466 676 99 11 11 chr5 115500011 115500118 -37037141 - B1_Mur4 SINE Alu -5 145 18 1 1466 2583 143 30 7 chr5 115500599 115501034 -37036225 - RLTR17 LTR ERVK -150 542 98 2 1466 693 205 37 0 chr5 115501327 115501489 -37035770 + ORR1D1 LTR MaLR 1 187 -197 3 1466 230 222 222 0 chr5 115501487 115501550 -37035709 + ORR1D1 LTR MaLR 297 373 -1 3 1466 592 182 71 0 chr5 115501614 115501740 -37035519 + MT2A LTR ERVL 399 533 0 4 1466 559 195 52 59 chr5 115502593 115502729 -37034530 - MER58A DNA MER1_type -13 211 77 5 1466 285 98 0 0 chr5 115502802 115502843 -37034416 + (CACTG)n Simple_repeat Simple_repeat 1 41 0 6 1466 675 202 213 6 chr5 115503093 115503267 -37033992 - B3 SINE B2 -6 210 1 7 1466 219 88 0 0 chr5 115503298 115503332 -37033927 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 8 1466 540 335 236 28 chr5 115504093 115504631 -37032628 + Charlie1a DNA MER1_type 258 907 -548 9 1466 515 206 78 10 chr5 115504694 115504797 -37032462 + PB1D10 SINE Alu 2 111 -6 1 1466 341 22 22 0 chr5 115504802 115504848 -37032411 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1466 401 313 98 115 chr5 115504877 115505346 -37031913 + Charlie1a DNA MER1_type 988 1448 -7 9 1466 1760 111 34 179 chr5 115506118 115506217 -37031042 - ORR1A4 LTR MaLR 0 329 263 1 1466 1048 85 7 0 chr5 115506217 115506358 -37030901 - B1_Mus1 SINE Alu -6 142 1 1 1466 1760 111 34 179 chr5 115506358 115506643 -37030616 - ORR1A4 LTR MaLR -67 262 1 1 1466 794 197 176 22 chr5 115507104 115507286 -37029973 - B3 SINE B2 0 216 7 1 1466 229 128 26 0 chr5 115507442 115507481 -37029778 - MER57E1 LTR ERV1 -218 154 115 1 1466 241 195 0 0 chr5 115507614 115507655 -37029604 + B2_Mm2 SINE B2 2 42 -153 1 1466 260 269 0 0 chr5 115507832 115507899 -37029360 - ID_B1 SINE B4 -54 170 104 1 1466 1313 107 37 11 chr5 115508012 115508201 -37029058 - B2_Mm2 SINE B2 -1 194 1 1 1466 1357 81 32 0 chr5 115508232 115508417 -37028842 - B2_Mm1t SINE B2 -1 192 2 1 1466 759 146 0 8 chr5 115508508 115508632 -37028627 + B1_Mus1 SINE Alu 19 141 -7 2 1466 241 331 71 45 chr5 115508709 115508864 -37028395 - MIR SINE MIR -42 220 62 2 1466 978 41 0 8 chr5 115509338 115509462 -37027797 + B1_Mm SINE Alu 25 147 0 2 1466 746 197 7 35 chr5 115509660 115509802 -37027457 + B1_Mus1 SINE Alu 11 148 0 2 1466 430 236 18 26 chr5 115509841 115509954 -37027305 - Lx5 LINE L1 -1057 5993 5882 2 1466 2074 274 26 111 chr5 115509999 115510799 -37026460 + Lx5 LINE L1 6097 6828 -222 2 1466 257 194 14 29 chr5 115510820 115510889 -37026370 + Lx6 LINE L1 7367 7434 -26 2 1466 25 0 0 0 chr5 115510893 115510918 -37026341 + AT_rich Low_complexity Low_complexity 1 25 0 2 1466 1063 78 42 0 chr5 115511849 115511991 -37025268 + B1_Mus1 SINE Alu 1 148 0 2 1466 1496 72 5 0 chr5 115512190 115512383 -37024876 + B2_Mm2 SINE B2 1 194 -1 2 1466 257 213 104 56 chr5 115512873 115513037 -37024222 + B3A SINE B2 3 207 -9 3 1466 953 244 130 45 chr5 115513294 115513672 -37023587 + MTD LTR MaLR 10 419 0 3 1466 585 211 0 47 chr5 115513678 115513807 -37023452 - B1F2 SINE Alu -2 147 25 3 1466 237 139 0 0 chr5 115514024 115514067 -37023192 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1466 302 331 70 42 chr5 115514252 115514394 -37022865 + RSINE1 SINE B4 20 165 0 3 1466 203 170 21 0 chr5 115514420 115514467 -37022792 + (TCCA)n Simple_repeat Simple_repeat 3 50 0 3 1466 657 106 76 61 chr5 115514950 115515081 -37022178 + B2_Mm2 SINE B2 1 133 -62 3 1466 266 352 108 19 chr5 115515218 115515432 -37021827 - L1M5 LINE L1 -452 5726 5494 3 1466 775 66 9 0 chr5 115515555 115515661 -37021598 - B2_Mm2 SINE B2 -88 107 1 3 1466 1123 82 7 0 chr5 115515980 115516127 -37021132 - B1_Mus1 SINE Alu 0 148 1 3 1466 560 185 18 9 chr5 115516198 115516307 -37020952 + PB1D9 SINE Alu 5 114 -6 4 1466 469 235 29 7 chr5 115516490 115516627 -37020632 - L1M5 LINE L1 -716 5463 5324 3 1466 272 146 0 35 chr5 115516694 115516751 -37020508 + CT-rich Low_complexity Low_complexity 1 55 0 4 1466 361 254 53 44 chr5 115516756 115516892 -37020367 - L1MC LINE L1 -820 5326 5189 4 1466 876 142 14 0 chr5 115516989 115517130 -37020129 + URR1B DNA MER1_type 83 225 0 4 1466 594 54 0 0 chr5 115517655 115517729 -37019530 + B1_Mm SINE Alu 68 141 -6 4 1466 474 18 0 0 chr5 115517731 115517786 -37019473 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 4 1466 584 282 100 11 chr5 115517896 115518086 -37019173 - B4A SINE B4 0 292 86 4 1466 1051 122 0 0 chr5 115518530 115518677 -37018582 + B1_Mus2 SINE Alu 1 147 0 4 1466 213 121 0 0 chr5 115518679 115518712 -37018547 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1466 428 277 193 22 chr5 115518712 115518893 -37018366 + B4A SINE B4 9 220 -72 4 1466 432 284 46 144 chr5 115519163 115519379 -37017880 - MLT1B LTR MaLR -72 318 144 5 1466 347 259 138 0 chr5 115519379 115519495 -37017764 + B1_Mur1 SINE Alu 1 132 -17 5 1466 432 284 46 144 chr5 115519495 115519624 -37017635 - MLT1B LTR MaLR -247 143 7 5 1466 224 226 115 35 chr5 115519710 115519797 -37017462 - PB1D7 SINE Alu -15 105 12 5 1466 327 198 30 131 chr5 115519894 115519993 -37017266 - PB1D9 SINE Alu -5 115 27 5 1466 242 361 31 0 chr5 115520171 115520268 -37016991 - L4 LINE RTE -1757 272 173 5 1466 297 176 162 0 chr5 115520610 115520678 -37016581 + PB1D9 SINE Alu 29 107 -13 5 1466 1044 112 99 0 chr5 115520772 115520933 -37016326 + B2_Mm1t SINE B2 3 179 -14 5 1466 378 203 255 57 chr5 115520933 115521090 -37016169 + B2_Mm2 SINE B2 2 189 -6 5 1466 314 313 0 20 chr5 115521105 115521131 -37016128 - B3A SINE B2 -17 181 156 5 1466 219 36 0 0 chr5 115521131 115521159 -37016100 + (CCCG)n Simple_repeat Simple_repeat 2 29 0 5 1466 314 313 0 20 chr5 115521159 115521233 -37016026 - B3A SINE B2 -43 155 83 5 1466 504 169 201 43 chr5 115521309 115521436 -37015823 - B1_Mm SINE Alu -1 149 13 6 1466 211 216 20 0 chr5 115522209 115522260 -37014999 + CT-rich Low_complexity Low_complexity 3 54 0 6 1466 221 333 26 13 chr5 115522270 115522346 -37014913 - RSINE1 SINE B4 -51 114 38 6 1466 361 239 130 17 chr5 115522667 115522782 -37014477 - B4A SINE B4 -164 128 1 6 1466 293 239 102 61 chr5 115522931 115523029 -37014230 - MLT1A LTR MaLR -5 369 268 6 1466 4068 100 32 26 chr5 115523039 115523663 -37013596 - RLTR5_Mm LTR ERV1 0 628 1 6 1466 326 303 26 60 chr5 115523772 115523888 -37013371 - L1M4 LINE L1 -878 5268 5157 6 1466 1289 91 17 0 chr5 115523945 115524120 -37013139 + B2_Mm1a SINE B2 2 179 -14 6 1466 297 173 0 0 chr5 115524173 115524225 -37013034 + B2_Mm2 SINE B2 50 101 -94 6 1466 421 172 21 0 chr5 115524245 115524338 -37012921 + GA-rich Low_complexity Low_complexity 2 96 0 6 1466 224 59 0 29 chr5 115524357 115524392 -37012867 + (TTTTC)n Simple_repeat Simple_repeat 4 37 0 7 1466 1087 51 65 0 chr5 115524392 115524530 -37012729 - B1_Mus2 SINE Alu 0 147 1 7 1466 369 298 31 31 chr5 115525418 115525546 -37011713 + B4A SINE B4 1 128 -164 7 1466 544 170 30 0 chr5 115525721 115525821 -37011438 + B1_Mur1 SINE Alu 42 144 -5 7 1466 322 330 87 0 chr5 115526523 115526638 -37010621 + B1F SINE Alu 23 147 -2 7 1466 668 237 20 113 chr5 115526651 115526846 -37010413 + B3 SINE B2 2 178 -38 7 1466 224 254 0 90 chr5 115527076 115527154 -37010105 + PB1D10 SINE Alu 21 91 -26 7 1466 550 169 17 0 chr5 115527301 115527419 -37009840 + CT-rich Low_complexity Low_complexity 1 120 0 7 1466 517 248 15 30 chr5 115527436 115527569 -37009690 - B1F2 SINE Alu -14 135 5 7 1466 1366 83 16 10 chr5 115528111 115528305 -37008954 - B2_Mm2 SINE B2 0 195 1 7 1466 1065 97 14 0 chr5 115528355 115528500 -37008759 - B1_Mus1 SINE Alu 0 148 2 8 1466 252 263 109 59 chr5 115528772 115528873 -37008386 + ID_B1 SINE B4 119 224 0 8 1466 211 224 42 69 chr5 115529305 115529377 -37007882 - PB1 SINE Alu 0 127 58 8 1466 702 266 39 92 chr5 115529445 115529751 -37007508 + RLTR15 LTR ERVK 31 320 -39 8 1466 237 270 196 33 chr5 115530384 115530476 -37006783 - RSINE1 SINE B4 -57 108 2 8 1466 183 42 0 0 chr5 115530504 115530528 -37006731 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1466 759 225 11 63 chr5 115530548 115530738 -37006521 - B3A SINE B2 -14 184 5 8 1466 296 279 225 0 chr5 115531109 115531220 -37006039 + RSINE1 SINE B4 1 136 -29 8 1466 288 0 0 0 chr5 115531395 115531427 -37005832 + (CCA)n Simple_repeat Simple_repeat 3 34 0 8 1466 248 209 61 167 chr5 115531439 115531571 -37005688 + B1_Mur4 SINE Alu 1 118 -32 8 1466 641 233 102 36 chr5 115531770 115531966 -37005293 + B3 SINE B2 4 212 -4 9 1466 1185 54 0 13 chr5 115532582 115532732 -37004527 + B1_Mus1 SINE Alu 1 148 0 9 1466 1581 42 5 0 chr5 115532916 115533107 -37004152 + B2_Mm1a SINE B2 2 193 0 9 1466 1569 22 44 0 chr5 115534002 115534184 -37003075 + B2_Mm1a SINE B2 2 191 -2 9 1466 1279 80 11 0 chr5 115534289 115534465 -37002794 + B2_Mm1t SINE B2 7 184 -9 9 1466 356 296 48 21 chr5 115534484 115534629 -37002630 + RSINE1 SINE B4 15 163 -2 9 1466 651 273 198 26 chr5 115535085 115535393 -37001866 + RCHARR1 DNA MER1_type 108 468 -506 9 1466 378 85 0 0 chr5 115535396 115535455 -37001804 + (GGGTG)n Simple_repeat Simple_repeat 2 60 0 9 1466 408 171 14 14 chr5 115535494 115535565 -37001694 - B1_Mus2 SINE Alu -3 144 74 9 1466 564 211 64 57 chr5 115535556 115535697 -37001562 + B1_Mur3 SINE Alu 8 149 0 9 1466 863 227 118 52 chr5 115535709 115536079 -37001180 + RCHARR1 DNA MER1_type 482 906 -68 9 1466 687 222 28 7 chr5 115536414 115536559 -37000700 + B3A SINE B2 9 156 -42 1 1466 1236 34 0 7 chr5 115536589 115536736 -37000523 - B1_Mm SINE Alu 0 147 2 1 1466 817 168 7 14 chr5 115537057 115537202 -37000057 - B1_Mus2 SINE Alu -3 144 1 1 1466 362 275 165 0 chr5 115537275 115537384 -36999875 + RSINE1 SINE B4 8 134 -31 1 1466 1561 52 16 0 chr5 115537498 115537689 -36999570 + B2_Mm2 SINE B2 2 195 0 1 1466 185 35 0 65 chr5 115537689 115537720 -36999539 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 1 1466 531 214 26 9 chr5 115537916 115538029 -36999230 - PB1D9 SINE Alu -5 115 1 1 1466 332 158 36 136 chr5 115537933 115538043 -36999216 - MT2B LTR ERVL -350 251 153 1 1466 257 194 240 9 chr5 115539334 115539513 -36997746 - L1_Mur3 LINE L1 -445 5438 5217 1 1466 1015 185 29 43 chr5 115539708 115539917 -36997342 - B3 SINE B2 0 216 11 1 1466 761 181 390 41 chr5 115539967 115540231 -36997028 - ORR1B2 LTR MaLR 0 367 12 1 1466 1361 45 102 0 chr5 115540569 115540746 -36996513 + B2_Mm2 SINE B2 1 195 0 1 1466 274 293 29 10 chr5 115541380 115541519 -36995740 - L1M2 LINE L1 -2667 3476 3314 1 1466 225 0 0 0 chr5 115541557 115541582 -36995677 + (CACCC)n Simple_repeat Simple_repeat 1 25 0 1 1466 607 327 62 15 chr5 115541777 115542115 -36995144 - ORR1E LTR MaLR -5 354 1 1 1466 255 242 77 87 chr5 115542198 115542302 -36994957 - L1M2 LINE L1 -3390 2753 2651 1 1466 260 319 14 0 chr5 115542324 115542393 -36994866 + ID_B1 SINE B4 72 141 -83 1 1466 532 154 77 0 chr5 115542349 115542440 -36994819 + PB1D9 SINE Alu 17 114 -6 1 1466 1030 174 59 5 chr5 115542460 115542662 -36994597 + URR1B DNA MER1_type 13 225 0 1 1466 434 257 26 0 chr5 115544220 115544333 -36992926 + PB1D10 SINE Alu 1 116 -1 1 1466 738 212 29 14 chr5 115544367 115544506 -36992753 + B1_Mur1 SINE Alu 8 148 -1 1 1466 376 154 77 0 chr5 115544523 115544601 -36992658 - RLTR12A LTR ERVK 0 568 485 1 1466 1233 149 33 19 chr5 115544576 115544788 -36992471 - RLTR12A LTR ERVK -353 215 1 1 1466 1359 72 50 0 chr5 115544795 115544975 -36992284 - B2_Mm1a SINE B2 -4 189 1 1 1466 314 218 64 0 chr5 115546117 115546195 -36991064 + PB1D10 SINE Alu 35 117 0 1 1466 450 276 178 22 chr5 115546337 115546522 -36990737 + B3 SINE B2 1 214 -2 1 1466 412 174 50 92 chr5 115546580 115546700 -36990559 - B1F2 SINE Alu 0 149 35 1 1466 1063 63 14 0 chr5 115546783 115546925 -36990334 - B1_Mus1 SINE Alu 0 148 5 1 1466 194 159 0 43 chr5 115547837 115547883 -36989376 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 1 1466 492 266 13 0 chr5 115549798 115549926 -36987333 - B3 SINE B2 -26 172 40 1 1466 631 280 79 11 chr5 115549950 115550127 -36987132 - B3 SINE B2 -27 189 1 1 1466 420 221 145 145 chr5 115550867 115550885 -36986374 + B4 SINE B4 71 174 -118 1 1466 911 71 0 52 chr5 115550885 115551019 -36986240 + B1_Mus1 SINE Alu 22 148 0 1 1466 355 244 8 11 chr5 115551063 115551156 -36986103 + B1_Mur1 SINE Alu 21 141 -8 1 1466 251 180 67 0 chr5 115551234 115551295 -36985964 + B1F SINE Alu 49 147 -2 1 1466 301 130 174 0 chr5 115551900 115551969 -36985290 + B3A SINE B2 103 183 -15 1 1466 705 178 82 47 chr5 115551985 115552156 -36985103 + B2_Mm2 SINE B2 5 181 -14 1 1466 450 220 135 96 chr5 115552505 115552540 -36984719 + B3A SINE B2 7 40 -158 1 1466 1286 75 109 0 chr5 115552540 115552714 -36984545 + B2_Mm2 SINE B2 2 194 -1 1 1466 450 220 135 96 chr5 115552714 115552834 -36984425 + B3A SINE B2 41 168 -30 1 1466 361 271 53 94 chr5 115552865 115553036 -36984223 + MT2B LTR ERVL 101 264 -337 1 1466 591 246 7 42 chr5 115552921 115552936 -36984323 + ID_B1 SINE B4 80 218 -6 1 1466 934 124 0 0 chr5 115552936 115553065 -36984194 + B1_Mur4 SINE Alu 16 144 -6 1 1466 275 288 0 27 chr5 115553606 115553661 -36983598 - RSINE1 SINE B4 -3 162 110 1 1466 1385 67 39 0 chr5 115553661 115553839 -36983420 - B2_Mm2 SINE B2 -6 189 5 1 1466 275 288 0 27 chr5 115553839 115553858 -36983401 - RSINE1 SINE B4 -56 109 91 1 1466 332 146 115 73 chr5 115554272 115554368 -36982891 - PB1 SINE Alu -5 122 23 1 1466 703 154 17 0 chr5 115554398 115554515 -36982744 - PB1D9 SINE Alu 0 120 2 1 1466 1078 205 195 8 chr5 115554563 115554824 -36982435 + RMER12 LTR ERVK 1 310 -1012 1 1466 400 249 69 27 chr5 115554824 115555073 -36982186 + RMER12 LTR ERVK 447 694 -710 1 1466 25 0 0 0 chr5 115555123 115555148 -36982111 + AT_rich Low_complexity Low_complexity 1 25 0 1 1466 1079 87 0 157 chr5 115555153 115555194 -36982065 + B2_Mm2 SINE B2 2 35 -160 1 1466 1273 41 0 0 chr5 115555194 115555341 -36981918 + B1_Mm SINE Alu 1 147 0 1 1466 1079 87 0 157 chr5 115555341 115555516 -36981743 + B2_Mm2 SINE B2 36 184 -11 1 1466 286 244 233 0 chr5 115555574 115555660 -36981599 + B3 SINE B2 87 192 -24 1 1466 766 181 58 0 chr5 115555674 115555812 -36981447 + B1_Mus1 SINE Alu 1 146 -2 1 1466 2991 51 16 0 chr5 115555820 115556195 -36981064 + L1Md_F2 LINE L1 6200 6580 -2 1 1466 1653 42 0 0 chr5 115556285 115556477 -36980782 + B2_Mm1a SINE B2 2 193 0 1 1466 256 269 15 0 chr5 115556524 115556591 -36980668 + B1F SINE Alu 73 140 -9 1 1466 1294 81 0 31 chr5 115556632 115556823 -36980436 + B2_Mm2 SINE B2 1 185 -10 1 1466 403 259 12 0 chr5 115557189 115557274 -36979985 + PB1D7 SINE Alu 28 113 -7 1 1466 288 0 0 0 chr5 115557274 115557306 -36979953 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1466 221 167 19 0 chr5 115557357 115557411 -36979848 + (TA)n Simple_repeat Simple_repeat 1 55 0 1 1466 276 184 413 19 chr5 115557491 115557646 -36979613 + B4A SINE B4 2 217 -75 1 1466 607 204 142 60 chr5 115557700 115557883 -36979376 + B3A SINE B2 1 198 0 1 1466 1095 96 7 0 chr5 115557919 115558065 -36979194 + B1_Mus1 SINE Alu 2 148 0 1 1466 269 350 22 7 chr5 115558071 115558209 -36979050 + L1M5 LINE L1 5352 5491 -673 1 1466 543 197 14 43 chr5 115558495 115558510 -36978749 + ID SINE ID 70 80 -144 1 1466 901 56 16 0 chr5 115558510 115558635 -36978624 + B1_Mus1 SINE Alu 1 127 -21 1 1466 1142 126 11 6 chr5 115558985 115559160 -36978099 + B2_Mm2 SINE B2 1 176 -19 1 1466 1296 84 0 0 chr5 115559167 115559346 -36977913 + (GA)n Simple_repeat Simple_repeat 2 180 0 1 1466 867 46 0 0 chr5 115559348 115559456 -36977803 + (GAAA)n Simple_repeat Simple_repeat 1 108 0 1 1466 234 138 29 44 chr5 115561480 115561548 -36975711 + G-rich Low_complexity Low_complexity 3 69 0 1 1466 252 167 0 0 chr5 115563512 115563560 -36973699 + (CACG)n Simple_repeat Simple_repeat 3 50 0 1 1466 1029 53 106 0 chr5 115563629 115563761 -36973498 - B1_Mus2 SINE Alu 0 147 2 1 1466 1198 68 7 0 chr5 115563963 115564110 -36973149 - B1_Mus1 SINE Alu 0 148 1 1 1466 1266 90 79 0 chr5 115564157 115564334 -36972925 + B2_Mm2 SINE B2 3 193 -2 1 1466 948 109 27 0 chr5 115564348 115564495 -36972764 - B2_Mm1a SINE B2 -6 187 37 1 1466 1496 65 5 0 chr5 115565081 115565267 -36971992 - B2_Mm1a SINE B2 -6 187 1 1 1466 323 152 121 0 chr5 115565272 115565338 -36971921 - PB1D10 SINE Alu -3 114 41 1 1466 234 288 0 57 chr5 115565288 115565358 -36971901 - 4.5SRNA scRNA scRNA -6 88 23 1 1466 687 207 49 14 chr5 115565376 115565518 -36971741 - B1_Mus2 SINE Alu 0 147 1 1 1466 284 83 21 0 chr5 115565803 115565851 -36971408 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1466 403 245 45 36 chr5 115565968 115566078 -36971181 + PB1D10 SINE Alu 7 117 0 1 1466 852 192 49 16 chr5 115566498 115566683 -36970576 + B3A SINE B2 7 197 -1 1 1466 371 244 0 159 chr5 115566699 115566850 -36970409 + RSINE1 SINE B4 39 165 0 1 1466 346 277 0 118 chr5 115566908 115566950 -36970309 + PB1D9 SINE Alu 2 34 -86 1 1466 1510 59 16 5 chr5 115566950 115567138 -36970121 + B2_Mm2 SINE B2 2 191 -4 1 1466 346 277 0 118 chr5 115567138 115567230 -36970029 + PB1D9 SINE Alu 35 120 0 1 1466 548 178 131 0 chr5 115567232 115567339 -36969920 + B3A SINE B2 1 121 -77 1 1466 705 274 30 0 chr5 115567798 115567962 -36969297 - B3A SINE B2 0 198 30 1 1466 887 189 129 10 chr5 115568019 115568212 -36969047 + B3 SINE B2 1 216 0 1 1466 1042 30 106 0 chr5 115568620 115568752 -36968507 + B1_Mm SINE Alu 2 147 0 1 1466 23 68 0 0 chr5 115569364 115569408 -36967851 + GC_rich Low_complexity Low_complexity 1 44 0 1 1466 235 281 38 94 chr5 115569468 115569574 -36967685 + PB1 SINE Alu 26 125 -2 1 1466 199 266 78 0 chr5 115569818 115569882 -36967377 + L2a LINE L2 3263 3331 -95 1 1466 1601 52 0 0 chr5 115569883 115570076 -36967183 + B2_Mm1a SINE B2 1 193 0 1 1466 213 254 99 0 chr5 115570600 115570671 -36966588 + B4A SINE B4 1 78 -214 1 1466 870 170 14 7 chr5 115570807 115570955 -36966304 + B1_Mur4 SINE Alu 2 150 0 1 1466 321 195 211 33 chr5 115571004 115571094 -36966165 - B1F2 SINE Alu -35 114 9 1 1466 202 29 0 54 chr5 115571113 115571150 -36966109 + (GTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1466 373 256 0 0 chr5 115571155 115571237 -36966022 + RSINE1 SINE B4 2 83 -82 1 1466 1123 112 0 6 chr5 115571424 115571594 -36965665 + B2_Mm2 SINE B2 1 169 -26 1 1466 336 172 289 46 chr5 115571608 115571738 -36965521 + B2_Mm2 SINE B2 29 190 -3 1 1466 663 12 0 0 chr5 115571783 115571865 -36965394 + L1Md_T LINE L1 6501 6582 0 1 1466 613 164 141 0 chr5 115572079 115572207 -36965052 - B1_Mur2 SINE Alu 0 149 4 1 1466 315 0 0 0 chr5 115572249 115572284 -36964975 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1466 385 303 74 4 chr5 115575866 115575987 -36961272 - PB1D9 SINE Alu -23 127 1 2 1466 417 266 193 17 chr5 115576012 115576030 -36961229 - B3 SINE B2 -7 209 190 2 1466 189 0 0 0 chr5 115576030 115576051 -36961208 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 2 1466 417 266 193 17 chr5 115576051 115576208 -36961051 - B3 SINE B2 -27 189 4 2 1466 600 14 0 0 chr5 115576931 115577000 -36960259 + (TG)n Simple_repeat Simple_repeat 1 69 0 2 1466 297 320 44 52 chr5 115577603 115577738 -36959521 - MIRb SINE MIR -122 146 6 2 1466 936 156 200 0 chr5 115578615 115578795 -36958464 + B3 SINE B2 1 216 0 2 1466 244 280 80 0 chr5 115578879 115578979 -36958280 + RSINE1 SINE B4 53 160 -5 2 1466 1574 47 0 10 chr5 115579231 115579426 -36957833 - B2_Mm2 SINE B2 -1 194 2 2 1466 251 298 85 19 chr5 115580002 115580108 -36957151 + B1F SINE Alu 10 122 -27 2 1466 314 222 0 0 chr5 115580053 115580116 -36957143 + ID_B1 SINE B4 146 208 -16 2 1466 281 29 0 0 chr5 115580122 115580157 -36957102 + U2 snRNA snRNA 1 35 -153 2 1466 213 108 0 0 chr5 115580287 115580324 -36956935 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1466 793 227 91 0 chr5 115580724 115580922 -36956337 - B3 SINE B2 0 216 1 2 1466 1222 187 174 24 chr5 115580969 115581117 -36956142 - ORR1C2 LTR MaLR 0 384 231 2 1466 1080 164 41 32 chr5 115581117 115581338 -36955921 - URR1B DNA MER1_type -2 223 1 2 1466 1222 187 174 24 chr5 115581338 115581523 -36955736 - ORR1C2 LTR MaLR -154 230 1 2 1466 816 176 146 11 chr5 115581523 115581701 -36955558 - B3 SINE B2 -14 202 1 2 1466 599 161 133 31 chr5 115581814 115581942 -36955317 - B1_Mur4 SINE Alu -2 148 8 2 1466 755 138 212 79 chr5 115582005 115582194 -36955065 - B3 SINE B2 0 216 3 2 1466 180 0 0 0 chr5 115582198 115582218 -36955041 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2 1466 991 80 80 0 chr5 115582224 115582361 -36954898 - B1_Mus1 SINE Alu 0 148 1 2 1466 21 36 0 0 chr5 115582369 115582397 -36954862 + AT_rich Low_complexity Low_complexity 1 28 0 2 1466 1704 155 5 114 chr5 115582915 115583345 -36953914 + RMER17C LTR ERVK 28 410 0 2 1466 201 74 0 0 chr5 115584642 115584669 -36952590 + (CCCG)n Simple_repeat Simple_repeat 3 29 0 2 1466 21 0 0 0 chr5 115585134 115585155 -36952104 + AT_rich Low_complexity Low_complexity 1 21 0 2 1466 3506 46 2 0 chr5 115585155 115585570 -36951689 - L1_Mus1 LINE L1 -4 6563 6148 2 1466 1276 31 132 0 chr5 115585578 115585737 -36951522 - B2_Mm2 SINE B2 -14 181 2 2 1466 1017 25 0 0 chr5 115585740 115585860 -36951399 + (TCC)n Simple_repeat Simple_repeat 3 122 0 2 1466 1596 203 44 31 chr5 115586027 115586387 -36950872 + ORR1D1 LTR MaLR 2 366 -8 2 1466 591 282 20 26 chr5 115586672 115586825 -36950434 + RSINE1 SINE B4 4 155 -10 2 1466 1321 77 16 32 chr5 115586914 115587102 -36950157 + B2_Mm1a SINE B2 1 185 -8 2 1466 324 102 0 0 chr5 115587281 115587330 -36949929 + (CAAT)n Simple_repeat Simple_repeat 3 51 0 2 1466 3903 143 152 21 chr5 115587417 115588215 -36949044 + RMER19B LTR ERVK 1 902 0 2 1466 742 287 63 4 chr5 115588215 115588451 -36948808 - B4A SINE B4 -42 250 1 2 1466 611 258 32 4 chr5 115588473 115588669 -36948590 - B3 SINE B2 0 198 10 2 1466 1100 197 30 130 chr5 115588697 115588738 -36948521 - ORR1B1 LTR MaLR -8 386 354 2 1466 1451 70 5 5 chr5 115588738 115588924 -36948335 - B2_Mm2 SINE B2 -9 186 1 2 1466 1100 197 30 130 chr5 115588924 115589059 -36948200 - ORR1B1 LTR MaLR -41 353 215 2 1466 1148 110 92 0 chr5 115589059 115589232 -36948027 - B2_Mm2 SINE B2 -5 190 2 2 1466 282 29 0 0 chr5 115589237 115589272 -36947987 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1466 1100 176 23 72 chr5 115589272 115589451 -36947808 - ORR1B1 LTR MaLR -182 212 11 2 1466 237 325 52 0 chr5 115589461 115589538 -36947721 + B1F SINE Alu 33 113 -36 2 1466 377 312 98 0 chr5 115589544 115589656 -36947603 - RSINE1 SINE B4 -1 164 42 2 1466 364 269 66 19 chr5 115589684 115589790 -36947469 + PB1D10 SINE Alu 5 115 -2 2 1466 252 77 0 0 chr5 115590158 115590197 -36947062 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2 1466 1202 55 0 7 chr5 115590197 115590345 -36946914 - B1_Mus2 SINE Alu 0 147 1 2 1466 262 123 30 15 chr5 115590379 115590423 -36946836 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1466 1063 71 57 0 chr5 115590423 115590563 -36946696 + B1_Mus1 SINE Alu 1 148 0 2 1466 262 123 30 15 chr5 115590563 115590584 -36946675 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2 1466 547 170 0 97 chr5 115590603 115590727 -36946532 - B1_Mur1 SINE Alu -19 130 19 2 1466 249 176 69 56 chr5 115591347 115591419 -36945840 + 4.5SRNA scRNA scRNA 14 86 -8 2 1466 776 97 0 0 chr5 115591363 115591477 -36945782 + B1_Mm SINE Alu 34 147 0 2 1466 540 205 16 32 chr5 115591627 115591753 -36945506 + B1_Mur1 SINE Alu 10 133 -16 2 1466 198 0 0 0 chr5 115592116 115592138 -36945121 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2 1466 1185 43 14 0 chr5 115592138 115592279 -36944980 - B1_Mm SINE Alu -3 144 2 2 1466 278 174 0 0 chr5 115592544 115592590 -36944669 - RSINE1 SINE B4 -118 47 2 2 1466 180 270 24 170 chr5 115593555 115593720 -36943539 - L3 LINE CR1 -1558 2931 2791 2 1466 474 96 0 0 chr5 115597739 115597812 -36939447 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1466 192 152 0 0 chr5 115598089 115598122 -36939137 + CT-rich Low_complexity Low_complexity 1 33 0 2 1466 531 249 41 153 chr5 115598646 115598888 -36938371 + B3 SINE B2 2 216 0 2 1466 1595 62 0 0 chr5 115599135 115599328 -36937931 - B2_Mm1a SINE B2 0 193 1 2 1466 500 218 36 50 chr5 115599437 115599577 -36937682 - RSINE1 SINE B4 0 165 28 2 1466 678 194 27 40 chr5 115599685 115599835 -36937424 + B1_Mur3 SINE Alu 2 149 0 2 1466 1326 108 32 0 chr5 115601827 115602013 -36935246 + B2_Mm2 SINE B2 2 193 -2 2 1466 374 321 49 14 chr5 115603225 115603367 -36933892 + MIRb SINE MIR 6 152 -116 2 1466 297 258 48 9 chr5 115603523 115603638 -36933621 + B1_Mur1 SINE Alu 8 135 -14 2 1466 234 0 0 0 chr5 115603639 115603665 -36933594 + (CATA)n Simple_repeat Simple_repeat 4 29 0 2 1466 426 206 41 10 chr5 115603774 115603872 -36933387 + PB1D7 SINE Alu 19 119 -1 2 1466 762 51 242 17 chr5 115603930 115604050 -36933209 - B1_Mus1 SINE Alu -1 147 1 2 1466 204 40 0 0 chr5 115604455 115604480 -36932779 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1466 658 217 22 7 chr5 115604729 115604868 -36932391 + ID_B1 SINE B4 80 220 -4 2 1467 369 0 0 0 chr5 115605662 115605703 -36931556 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1467 622 197 27 81 chr5 115606237 115606386 -36930873 - B1F2 SINE Alu -6 143 3 2 1467 881 226 45 20 chr5 115606592 115606791 -36930468 - B3 SINE B2 -12 204 1 2 1467 219 36 0 0 chr5 115608165 115608193 -36929066 + (TCC)n Simple_repeat Simple_repeat 2 29 0 2 1467 340 258 75 47 chr5 115609214 115609320 -36927939 + PB1D7 SINE Alu 11 119 -1 2 1467 298 267 11 34 chr5 115609323 115609412 -36927847 + B3 SINE B2 1 87 -129 2 1467 1019 86 43 0 chr5 115609432 115609572 -36927687 + B1_Mus1 SINE Alu 2 147 -1 2 1467 462 220 91 6 chr5 115609932 115610047 -36927212 - PB1 SINE Alu -34 115 2 2 1467 212 361 25 25 chr5 115610199 115610321 -36926938 - MIRc SINE MIR -68 200 79 2 1467 280 272 73 3 chr5 115610394 115610533 -36926726 + MIR SINE MIR 82 229 -39 2 1467 279 336 197 0 chr5 115610590 115610712 -36926547 - RSINE1 SINE B4 -17 148 3 2 1467 379 299 163 10 chr5 115610881 115611077 -36926182 + MIRb SINE MIR 41 266 -2 2 1467 189 286 48 0 chr5 115611706 115611769 -36925490 + MIR SINE MIR 76 141 -121 2 1467 207 0 0 0 chr5 115611842 115611865 -36925394 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1467 915 42 0 16 chr5 115611878 115612000 -36925259 + B1_Mus1 SINE Alu 27 146 -2 2 1467 345 100 0 0 chr5 115612008 115612058 -36925201 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 2 1467 713 257 53 5 chr5 115612058 115612246 -36925013 - ID_B1 SINE B4 -13 211 15 2 1467 404 215 17 78 chr5 115612291 115612407 -36924852 - PB1D10 SINE Alu 0 117 9 2 1467 203 271 0 0 chr5 115612507 115612555 -36924704 - L2c LINE L2 -311 3076 3029 2 1467 360 0 0 0 chr5 115612586 115612626 -36924633 + (TTTTC)n Simple_repeat Simple_repeat 5 44 0 2 1467 469 134 49 0 chr5 115612626 115612708 -36924551 - PB1D9 SINE Alu 0 120 35 2 1467 369 0 0 0 chr5 115612710 115612751 -36924508 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 2 1467 800 236 0 84 chr5 115612751 115612954 -36924305 - B3 SINE B2 -30 186 1 2 1467 301 326 76 49 chr5 115613216 115613400 -36923859 - ORR1E LTR MaLR -169 190 2 2 1467 734 193 31 83 chr5 115613633 115613825 -36923434 + B3A SINE B2 1 182 -16 2 1467 1208 43 0 0 chr5 115613881 115614021 -36923238 - B1_Mus1 SINE Alu -8 140 1 2 1467 693 239 144 16 chr5 115614044 115614231 -36923028 + B3 SINE B2 1 211 -5 2 1467 1178 117 39 11 chr5 115614231 115614247 -36923012 - B2_Mm1t SINE B2 -5 188 174 2 1467 1662 37 0 0 chr5 115614247 115614437 -36922822 - B2_Mm1a SINE B2 -2 191 2 2 1467 1178 117 39 11 chr5 115614437 115614602 -36922657 - B2_Mm1t SINE B2 -20 173 2 2 1467 1307 124 38 0 chr5 115614636 115614821 -36922438 + B2_Mm2 SINE B2 1 192 -3 2 1467 672 143 0 0 chr5 115614823 115614935 -36922324 + (GAA)n Simple_repeat Simple_repeat 3 114 0 2 1467 1357 87 16 16 chr5 115614972 115615159 -36922100 - B2_Mm2 SINE B2 -7 188 2 2 1467 201 39 0 0 chr5 115615455 115615481 -36921778 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1467 596 273 59 75 chr5 115615492 115615678 -36921581 - B3A SINE B2 -15 183 1 3 1467 459 0 0 0 chr5 115615709 115615760 -36921499 + (TGG)n Simple_repeat Simple_repeat 3 53 0 3 1467 419 263 0 10 chr5 115615774 115615870 -36921389 - B1F1 SINE Alu -54 95 1 3 1467 530 234 142 0 chr5 115617014 115617155 -36920104 + RSINE1 SINE B4 4 164 -1 3 1467 267 299 19 67 chr5 115617905 115618009 -36919250 + ID_B1 SINE B4 59 157 -67 3 1467 1044 202 10 10 chr5 115618011 115618211 -36919048 + B3 SINE B2 4 203 -13 3 1467 237 108 0 0 chr5 115618211 115618248 -36919011 + (TAA)n Simple_repeat Simple_repeat 2 38 0 3 1467 786 167 45 0 chr5 115618381 115618513 -36918746 + B1_Mus2 SINE Alu 3 140 -7 3 1467 596 297 16 14 chr5 115619354 115619601 -36917658 - L1MC2 LINE L1 -29 5851 5641 3 1467 1148 54 18 18 chr5 115619608 115619777 -36917482 - B2_Mm2 SINE B2 0 195 27 3 1467 1137 82 7 0 chr5 115619821 115619968 -36917291 - B1_Mus1 SINE Alu 0 148 1 3 1467 217 154 0 0 chr5 115619968 115620007 -36917252 - B3 SINE B2 -176 40 2 3 1467 453 235 78 63 chr5 115620007 115620064 -36917195 - B3A SINE B2 -1 197 143 3 1467 432 0 0 0 chr5 115620064 115620112 -36917147 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1467 453 235 78 63 chr5 115620112 115620245 -36917014 - B3A SINE B2 -56 142 4 3 1467 627 204 7 87 chr5 115620523 115620673 -36916586 - B1_Mur2 SINE Alu -11 138 1 3 1467 484 238 0 10 chr5 115620873 115620963 -36916296 + B1_Mm SINE Alu 1 89 -58 3 1467 986 208 0 5 chr5 115620963 115621156 -36916103 - URR1A DNA MER1_type 0 226 35 3 1467 302 194 0 0 chr5 115621156 115621217 -36916042 + B1_Mur1 SINE Alu 68 149 0 3 1467 594 146 0 0 chr5 115621219 115621298 -36915961 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 3 1467 1176 74 0 0 chr5 115621298 115621446 -36915813 + B1_Mus1 SINE Alu 1 148 0 3 1467 594 146 0 0 chr5 115621446 115621469 -36915790 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 3 1467 445 261 209 0 chr5 115621854 115621988 -36915271 + RSINE1 SINE B4 3 164 -1 3 1467 426 39 0 0 chr5 115621990 115622042 -36915217 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 3 1467 1178 106 78 0 chr5 115623668 115623847 -36913412 - B2_Mm1t SINE B2 0 193 1 3 1467 724 288 48 43 chr5 115623966 115624173 -36913086 - B4A SINE B4 0 292 85 3 1467 288 77 0 0 chr5 115624204 115624243 -36913016 + (CACCAT)n Simple_repeat Simple_repeat 5 43 0 3 1467 508 204 0 37 chr5 115624243 115624315 -36912944 - ID_B1 SINE B4 -6 218 147 3 1467 767 212 85 40 chr5 115624315 115624516 -36912743 - B3 SINE B2 -6 210 1 3 1467 508 204 0 37 chr5 115624516 115624550 -36912709 - ID_B1 SINE B4 -78 146 116 3 1467 311 242 0 15 chr5 115624588 115624655 -36912604 + B4A SINE B4 129 194 -98 3 1467 450 291 42 14 chr5 115624606 115624749 -36912510 - ID_B1 SINE B4 -70 154 8 3 1467 1243 28 0 48 chr5 115624848 115625037 -36912222 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 3 1467 225 310 58 33 chr5 115625239 115625359 -36911900 - MIRm SINE MIR -110 166 44 3 1467 278 243 0 114 chr5 115625731 115625810 -36911449 + PB1D9 SINE Alu 47 116 -4 3 1467 1186 61 0 26 chr5 115625818 115625970 -36911289 + B1_Mus1 SINE Alu 1 148 0 3 1467 928 151 7 14 chr5 115626004 115626152 -36911107 + B1_Mus2 SINE Alu 1 147 0 3 1467 333 0 0 0 chr5 115626157 115626194 -36911065 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 3 1467 1100 274 7 24 chr5 115627669 115627964 -36909295 - MER2 DNA MER2_type 0 345 56 3 1467 553 216 237 34 chr5 115627968 115628145 -36909114 - B3 SINE B2 -3 213 1 3 1467 252 0 0 0 chr5 115628179 115628207 -36909052 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1467 754 180 8 0 chr5 115628207 115628326 -36908933 - RSINE1 SINE B4 -40 125 7 3 1467 257 296 12 36 chr5 115628805 115628889 -36908370 + MIRc SINE MIR 6 87 -181 3 1467 256 235 0 0 chr5 115629076 115629127 -36908132 - MER3 DNA MER1_type -4 205 155 3 1467 193 384 81 20 chr5 115629376 115629525 -36907734 + MIRb SINE MIR 68 225 -43 3 1467 516 314 15 40 chr5 115629695 115629897 -36907362 - B3A SINE B2 0 198 2 3 1467 983 72 7 0 chr5 115629938 115630076 -36907183 + B1_Mus1 SINE Alu 8 146 -2 3 1467 469 284 18 0 chr5 115630090 115630199 -36907060 - B4A SINE B4 -132 160 50 3 1467 22 56 0 0 chr5 115630227 115630263 -36906996 + AT_rich Low_complexity Low_complexity 1 36 0 3 1467 448 196 19 29 chr5 115630265 115630370 -36906889 - B3 SINE B2 0 216 113 3 1467 804 238 6 11 chr5 115630392 115630566 -36906693 - B3 SINE B2 -43 173 1 3 1467 180 0 0 0 chr5 115630644 115630664 -36906595 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 1467 285 29 0 0 chr5 115630724 115630758 -36906501 + (CACGC)n Simple_repeat Simple_repeat 1 34 0 3 1467 330 67 0 0 chr5 115631220 115631265 -36905994 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1467 400 338 42 21 chr5 115632722 115632958 -36904301 + MIRb SINE MIR 10 254 -14 3 1467 191 241 136 25 chr5 115633623 115633704 -36903555 + MIR SINE MIR 50 139 -123 3 1467 337 260 20 50 chr5 115633904 115634005 -36903254 + PB1D10 SINE Alu 3 100 -17 3 1467 719 217 35 14 chr5 115634160 115634305 -36902954 + B1_Mur1 SINE Alu 2 149 0 3 1467 297 345 18 9 chr5 115634479 115634590 -36902669 - MIRb SINE MIR -77 191 80 3 1467 760 162 323 0 chr5 115635413 115635580 -36901679 + URR1B DNA MER1_type 5 225 0 3 1467 21 0 0 0 chr5 115636118 115636139 -36901120 + GC_rich Low_complexity Low_complexity 1 21 0 3 1467 246 62 0 0 chr5 115636237 115636269 -36900990 + (CCTG)n Simple_repeat Simple_repeat 4 35 0 3 1467 419 118 13 0 chr5 115636675 115636751 -36900508 + (CA)n Simple_repeat Simple_repeat 2 78 0 3 1467 215 283 174 0 chr5 115637866 115637958 -36899301 + MIRm SINE MIR 48 155 -121 3 1467 1175 61 0 13 chr5 115638208 115638348 -36898911 + B1_Mus1 SINE Alu 1 140 -8 3 1467 324 0 0 0 chr5 115638348 115638384 -36898875 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1467 194 91 30 0 chr5 115638399 115638432 -36898827 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 1467 1114 225 0 5 chr5 115638558 115638772 -36898487 + B3 SINE B2 3 215 -1 3 1467 574 287 53 0 chr5 115639172 115639322 -36897937 + RSINE1 SINE B4 7 164 -1 3 1467 219 250 17 35 chr5 115639330 115639446 -36897813 + (CATATA)n Simple_repeat Simple_repeat 4 117 0 3 1467 318 227 0 0 chr5 115639449 115639515 -36897744 - B1_Mur3 SINE Alu -82 67 2 3 1467 240 236 55 14 chr5 115640057 115640130 -36897129 + MIRc SINE MIR 74 149 -119 3 1467 347 301 117 34 chr5 115640937 115641116 -36896143 - MIRb SINE MIR -9 259 66 3 1467 378 0 0 0 chr5 115641474 115641516 -36895743 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1467 21 57 0 0 chr5 115641568 115641603 -36895656 + AT_rich Low_complexity Low_complexity 1 35 0 3 1467 195 307 40 13 chr5 115642224 115642300 -36894959 + L2b LINE L2 3298 3375 0 3 1467 22 35 0 0 chr5 115644373 115644402 -36892857 + GC_rich Low_complexity Low_complexity 1 29 0 3 1467 305 256 30 42 chr5 115644993 115645116 -36892143 + MIRb SINE MIR 35 157 -111 3 1467 287 324 22 0 chr5 115645453 115645548 -36891711 + B1F1 SINE Alu 3 107 -13 3 1467 342 0 0 0 chr5 115645562 115645600 -36891659 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1467 428 195 248 0 chr5 115645614 115645727 -36891532 + ID_B1 SINE B4 84 224 0 3 1467 741 110 246 0 chr5 115645727 115645845 -36891414 + B1_Mus1 SINE Alu 1 147 -1 3 1467 1027 116 0 25 chr5 115645870 115646029 -36891230 + B2_Mm2 SINE B2 2 156 -39 3 1467 414 0 0 0 chr5 115646029 115646075 -36891184 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 3 1467 561 206 85 31 chr5 115646079 115646209 -36891050 + B1_Mur1 SINE Alu 4 140 -9 3 1467 248 274 27 0 chr5 115646741 115646814 -36890445 - ID4_ SINE ID -7 76 2 3 1467 223 355 14 21 chr5 115647079 115647220 -36890039 - L2 LINE L2 -654 2765 2626 3 1467 1141 52 0 0 chr5 115647224 115647359 -36889900 + B1_Mm SINE Alu 1 135 -12 3 1467 525 242 26 29 chr5 115647394 115647555 -36889704 + ID_B1 SINE B4 82 238 -54 3 1467 23 0 0 0 chr5 115647570 115647593 -36889666 + AT_rich Low_complexity Low_complexity 1 23 0 3 1467 212 297 132 0 chr5 115647638 115647729 -36889530 - L2c LINE L2 -159 3228 3126 3 1467 423 0 0 0 chr5 115647951 115647998 -36889261 + (TGG)n Simple_repeat Simple_repeat 2 48 0 3 1467 1482 78 16 0 chr5 115648020 115648212 -36889047 - B2_Mm2 SINE B2 0 195 1 3 1467 216 0 0 0 chr5 115648824 115648848 -36888411 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1467 1349 89 11 0 chr5 115649109 115649288 -36887971 + B2_Mm1t SINE B2 1 181 -12 3 1467 1216 62 0 0 chr5 115649288 115649432 -36887827 + B1_Mus1 SINE Alu 1 145 -3 3 1467 252 0 0 0 chr5 115649432 115649460 -36887799 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 3 1467 796 227 5 26 chr5 115649486 115649676 -36887583 - B3 SINE B2 -30 186 1 3 1467 274 327 124 0 chr5 115649723 115649836 -36887423 - RSINE1 SINE B4 -31 134 8 3 1467 540 152 0 0 chr5 115649841 115649940 -36887319 + CT-rich Low_complexity Low_complexity 3 101 0 3 1467 360 0 0 0 chr5 115649947 115649987 -36887272 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 1467 365 88 0 22 chr5 115650001 115650067 -36887192 - B2_Mm2 SINE B2 -107 109 47 4 1467 1299 107 23 0 chr5 115650114 115650291 -36886968 - B2_Mm2 SINE B2 -14 181 1 4 1467 495 246 23 23 chr5 115650297 115650430 -36886829 - B1F SINE Alu -5 144 12 4 1467 230 307 13 26 chr5 115650377 115650454 -36886805 - B4A SINE B4 -143 149 74 4 1467 195 129 0 0 chr5 115650652 115650683 -36886576 + (T)n Simple_repeat Simple_repeat 1 31 0 4 1467 1197 69 0 0 chr5 115650685 115650830 -36886429 - B1_Mus2 SINE Alu -1 146 2 4 1467 196 218 35 52 chr5 115650892 115650950 -36886309 + L2b LINE L2 3218 3274 -101 4 1467 1207 63 0 0 chr5 115651764 115651907 -36885352 - B1_Mus1 SINE Alu -5 143 1 4 1467 1219 41 7 0 chr5 115652305 115652451 -36884808 + B1_Mm SINE Alu 1 147 0 4 1467 1498 34 23 0 chr5 115652476 115652653 -36884606 - B2_Mm2 SINE B2 -14 181 1 4 1467 772 206 206 0 chr5 115652662 115652837 -36884422 - B3 SINE B2 -4 212 2 4 1467 461 255 83 51 chr5 115652875 115653032 -36884227 - RSINE1 SINE B4 -1 164 3 4 1467 676 221 0 15 chr5 115653072 115653205 -36884054 + ID_B1 SINE B4 78 208 -16 4 1467 209 33 33 0 chr5 115653242 115653272 -36883987 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1467 1170 68 0 7 chr5 115653272 115653409 -36883850 - B1_Mus2 SINE Alu -10 137 1 4 1467 432 0 0 0 chr5 115653413 115653461 -36883798 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 4 1467 585 259 18 31 chr5 115653493 115653656 -36883603 + ID_B1 SINE B4 1 161 -63 4 1467 189 0 0 0 chr5 115653845 115653866 -36883393 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1467 369 0 0 0 chr5 115654635 115654676 -36882583 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1467 273 266 0 0 chr5 115655161 115655225 -36882034 + RSINE1 SINE B4 73 136 -29 4 1467 261 0 0 0 chr5 115655540 115655569 -36881690 + (TC)n Simple_repeat Simple_repeat 2 30 0 4 1467 375 41 0 0 chr5 115655569 115655617 -36881642 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1467 770 40 0 0 chr5 115655906 115656007 -36881252 + B1_Mus2 SINE Alu 35 135 -12 4 1467 1386 36 0 0 chr5 115656007 115656175 -36881084 + (GAAA)n Simple_repeat Simple_repeat 1 168 0 4 1467 398 313 88 15 chr5 115656197 115656401 -36880858 + LTR33 LTR ERVL 297 515 0 4 1467 1263 65 0 0 chr5 115656843 115657012 -36880247 + B2_Mm2 SINE B2 1 169 -26 4 1467 459 259 236 42 chr5 115657098 115657263 -36879996 + B3A SINE B2 1 197 -1 4 1467 1092 122 75 32 chr5 115657368 115657555 -36879704 - B2_Mm2 SINE B2 0 195 1 4 1467 186 176 0 0 chr5 115658208 115658259 -36879000 + C-rich Low_complexity Low_complexity 1 51 0 4 1467 237 240 105 48 chr5 115658494 115658599 -36878660 + MT2B2 LTR ERVL 134 244 -340 4 1467 601 226 36 7 chr5 115658517 115658655 -36878604 + ID_B1 SINE B4 81 222 -2 4 1467 4401 34 32 9 chr5 115658985 115659513 -36877746 - L1Md_F2 LINE L1 -12 6570 6031 4 1467 953 268 20 72 chr5 115659547 115659634 -36877625 + B4 SINE B4 2 84 -208 4 1467 267 31 0 0 chr5 115659634 115659666 -36877593 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4 1467 953 268 20 72 chr5 115659666 115659884 -36877375 + B4 SINE B4 85 291 -1 4 1467 252 188 0 0 chr5 115659902 115659966 -36877293 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1467 34 55 0 0 chr5 115660019 115660074 -36877185 + AT_rich Low_complexity Low_complexity 1 55 0 4 1467 907 151 14 0 chr5 115660076 115660215 -36877044 + B1_Mur4 SINE Alu 3 143 -7 4 1467 290 26 0 25 chr5 115660241 115660281 -36876978 + (TTA)n Simple_repeat Simple_repeat 3 41 0 4 1467 235 246 0 115 chr5 115660281 115660359 -36876900 + B4A SINE B4 224 292 0 4 1467 253 198 0 24 chr5 115660359 115660442 -36876817 + (CATA)n Simple_repeat Simple_repeat 3 83 0 4 1467 475 238 23 45 chr5 115660479 115660611 -36876648 + B3 SINE B2 35 163 -53 4 1467 555 237 35 0 chr5 115660867 115660981 -36876278 + PB1D9 SINE Alu 3 120 0 4 1467 303 122 0 0 chr5 115661064 115661113 -36876146 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 4 1467 387 0 0 0 chr5 115661177 115661220 -36876039 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1467 325 154 0 0 chr5 115661421 115661473 -36875786 + HAL1-3A_ME LINE L1 1976 2027 -831 4 1467 216 216 0 0 chr5 115661474 115661525 -36875734 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1467 325 102 0 0 chr5 115661530 115661579 -36875680 + HAL1-3A_ME LINE L1 1976 2024 -834 4 1467 345 150 0 0 chr5 115661811 115661871 -36875388 - HAL1-3A_ME LINE L1 -827 2031 1972 4 1467 348 224 5 38 chr5 115661915 115662101 -36875158 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1467 694 247 6 69 chr5 115662101 115662275 -36874984 - RSINE1 SINE B4 0 165 3 4 1467 243 125 0 0 chr5 115662340 115662380 -36874879 + (TGG)n Simple_repeat Simple_repeat 1 40 0 4 1467 929 226 45 36 chr5 115662885 115663105 -36874154 - ID_B1 SINE B4 0 224 3 4 1467 284 162 281 24 chr5 115663140 115663222 -36874037 + PB1D9 SINE Alu 18 120 0 4 1467 529 216 144 46 chr5 115663251 115663445 -36873814 - B3 SINE B2 -3 213 1 4 1467 434 278 52 8 chr5 115663512 115663646 -36873613 - RSINE1 SINE B4 -15 150 11 4 1467 1188 89 9 15 chr5 115663663 115663997 -36873262 + (TTTC)n Simple_repeat Simple_repeat 1 331 0 4 1467 886 128 0 15 chr5 115663998 115664133 -36873126 - B1_Mur2 SINE Alu -13 136 4 4 1467 257 253 53 32 chr5 115664275 115664369 -36872890 + MIRb SINE MIR 48 143 -125 4 1467 726 184 0 98 chr5 115664592 115664755 -36872504 + B1_Mur2 SINE Alu 2 148 -1 4 1467 310 92 29 67 chr5 115664755 115664860 -36872399 + A-rich Low_complexity Low_complexity 1 101 0 4 1467 294 73 0 0 chr5 115666204 115666245 -36871014 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 4 1467 242 211 58 20 chr5 115666400 115666514 -36870745 + L1M5 LINE L1 5348 5470 -692 4 1467 260 330 9 27 chr5 115666520 115666632 -36870627 + L1MD LINE L1 5765 5874 -2121 4 1467 631 202 10 0 chr5 115666632 115666736 -36870523 + PB1D10 SINE Alu 3 107 -10 4 1467 621 250 64 0 chr5 115666761 115666917 -36870342 + B3A SINE B2 2 167 -31 4 1467 485 58 14 0 chr5 115666920 115666989 -36870270 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1467 1039 53 8 15 chr5 115667035 115667169 -36870090 + B1_Mus2 SINE Alu 3 135 -12 4 1467 279 0 0 0 chr5 115667170 115667201 -36870058 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1467 1106 72 22 0 chr5 115667302 115667441 -36869818 - B1_Mus1 SINE Alu -6 142 1 4 1467 760 203 0 22 chr5 115667474 115667610 -36869649 + B1_Mus1 SINE Alu 6 138 -10 4 1467 494 31 16 0 chr5 115667610 115667674 -36869585 + (CA)n Simple_repeat Simple_repeat 2 66 0 4 1467 405 338 6 89 chr5 115667691 115667860 -36869399 + RSINE1 SINE B4 1 155 -10 4 1467 1058 195 28 28 chr5 115667875 115668091 -36869168 - B3 SINE B2 0 216 1 4 1467 322 221 86 40 chr5 115668306 115668457 -36868802 + L1M5 LINE L1 5573 5730 -714 4 1467 797 205 102 34 chr5 115668460 115668637 -36868622 - B3A SINE B2 -9 189 1 4 1467 273 296 109 18 chr5 115668639 115668749 -36868510 + MTD LTR MaLR 5 124 -295 4 1467 1005 141 0 0 chr5 115668752 115668887 -36868372 - B1_Mur3 SINE Alu -12 137 3 4 1467 368 272 87 2 chr5 115668894 115668997 -36868262 - PB1 SINE Alu -97 214 23 4 1467 233 278 77 11 chr5 115669036 115669127 -36868132 + MLT1F LTR MaLR 33 129 -419 4 1467 333 309 53 73 chr5 115669349 115669499 -36867760 + B4A SINE B4 74 220 -72 4 1467 705 150 85 23 chr5 115669379 115669509 -36867750 + B1_Mm SINE Alu 10 147 0 4 1467 540 0 0 0 chr5 115669531 115669591 -36867668 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 4 1467 270 0 0 0 chr5 115669592 115669622 -36867637 + (CAGG)n Simple_repeat Simple_repeat 1 30 0 4 1467 378 195 0 54 chr5 115669683 115669775 -36867484 + PB1 SINE Alu 41 127 0 4 1467 275 228 62 12 chr5 115669926 115670006 -36867253 + PB1D9 SINE Alu 35 118 -2 4 1467 413 261 121 48 chr5 115670010 115670170 -36867089 + B3A SINE B2 2 178 -20 4 1467 718 211 32 13 chr5 115670175 115670329 -36866930 + RSINE1 SINE B4 4 160 -5 4 1467 357 192 0 37 chr5 115670329 115670404 -36866855 + PB1D9 SINE Alu 48 120 0 4 1467 302 216 0 0 chr5 115670453 115670504 -36866755 + ID_B1 SINE B4 151 201 -23 4 1467 331 161 36 0 chr5 115670477 115670533 -36866726 + B1F1 SINE Alu 68 125 -24 4 1467 209 290 32 16 chr5 115671974 115672037 -36865222 + MIR SINE MIR 5 68 -194 4 1467 222 150 0 0 chr5 115672037 115672077 -36865182 + (TCTCCC)n Simple_repeat Simple_repeat 4 43 0 4 1467 761 103 43 0 chr5 115672111 115672227 -36865032 - B1_Mur3 SINE Alu 0 149 29 4 1467 194 310 0 44 chr5 115672237 115672328 -36864931 + MIRc SINE MIR 82 168 -100 4 1467 376 246 252 8 chr5 115672492 115672611 -36864648 + RSINE1 SINE B4 5 152 -13 4 1467 493 257 59 26 chr5 115672637 115672789 -36864470 + B3 SINE B2 59 215 -1 4 1467 1449 75 16 0 chr5 115673175 115673362 -36863897 + B2_Mm2 SINE B2 1 190 -5 4 1467 261 0 0 0 chr5 115673552 115673581 -36863678 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1467 510 126 12 53 chr5 115673583 115673709 -36863550 - B1_Mm SINE Alu -4 146 31 4 1467 248 228 0 34 chr5 115673868 115673927 -36863332 - L2a LINE L2 -32 3394 3338 4 1467 348 135 0 0 chr5 115673977 115674051 -36863208 + (G)n Simple_repeat Simple_repeat 1 74 0 4 1467 210 171 0 0 chr5 115674079 115674120 -36863139 + (CTG)n Simple_repeat Simple_repeat 1 41 0 5 1467 528 267 8 22 chr5 115674120 115674254 -36863005 - ID_B1 SINE B4 -7 217 86 5 1467 512 307 52 38 chr5 115674259 115674472 -36862787 - MIR SINE MIR 0 262 47 5 1467 247 275 33 68 chr5 115674502 115674710 -36862549 - L2a LINE L2 -253 3173 2968 4 1467 450 53 0 0 chr5 115675325 115675382 -36861877 + (TA)n Simple_repeat Simple_repeat 1 57 0 5 1467 513 174 8 155 chr5 115675644 115675773 -36861486 + B1_Mur1 SINE Alu 29 138 -11 5 1467 462 18 0 0 chr5 115675789 115675844 -36861415 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1467 336 265 74 161 chr5 115676084 115676246 -36861013 + RSINE1 SINE B4 3 150 -15 5 1467 227 260 125 78 chr5 115676391 115676583 -36860676 - MLT1A0 LTR MaLR -11 354 154 5 1467 1626 202 143 6 chr5 115676593 115676957 -36860302 - MTD LTR MaLR -5 414 1 5 1467 1141 76 82 0 chr5 115677002 115677160 -36860099 + B2_Mm2 SINE B2 2 172 -23 5 1467 1190 7 7 0 chr5 115677160 115677299 -36859960 + (GAA)n Simple_repeat Simple_repeat 2 141 0 5 1467 735 140 48 0 chr5 115677305 115677443 -36859816 + B1_Mur4 SINE Alu 2 149 -1 5 1467 1098 61 0 0 chr5 115677464 115677596 -36859663 + B1_Mus1 SINE Alu 2 133 -15 5 1467 534 291 43 25 chr5 115677611 115677773 -36859486 - RSINE1 SINE B4 0 165 1 5 1467 791 233 88 0 chr5 115677793 115677986 -36859273 - B3 SINE B2 -6 210 1 5 1467 852 113 0 8 chr5 115677994 115678119 -36859140 - B1_Mur4 SINE Alu -9 141 18 5 1467 214 294 142 35 chr5 115678119 115678232 -36859027 - B4A SINE B4 -163 129 5 5 1467 447 260 119 0 chr5 115678287 115678460 -36858799 + L1MB7 LINE L1 5532 5725 -455 5 1467 639 164 64 24 chr5 115678507 115678632 -36858627 + B1_Mur2 SINE Alu 9 138 -11 5 1467 393 164 15 18 chr5 115678639 115678743 -36858516 + L1MB7 LINE L1 5918 6022 -158 5 1467 411 21 0 0 chr5 115678820 115678868 -36858391 + (TC)n Simple_repeat Simple_repeat 1 48 0 5 1467 414 0 0 0 chr5 115678868 115678913 -36858346 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1467 21 0 0 0 chr5 115679031 115679052 -36858207 + AT_rich Low_complexity Low_complexity 1 21 0 5 1467 702 292 50 77 chr5 115679092 115679290 -36857969 - B4A SINE B4 0 292 85 5 1467 1450 68 15 15 chr5 115679290 115679485 -36857774 - B2_Mm2 SINE B2 0 195 1 5 1467 702 292 50 77 chr5 115679485 115679586 -36857673 - B4A SINE B4 -208 84 1 5 1467 536 228 10 0 chr5 115679588 115679689 -36857570 - PB1D10 SINE Alu -3 114 13 5 1467 265 286 93 19 chr5 115679713 115679820 -36857439 + MLT1G1 LTR MaLR 246 360 -219 5 1467 352 191 214 0 chr5 115679975 115680064 -36857195 + PB1D9 SINE Alu 5 112 -8 5 1467 191 277 0 22 chr5 115680122 115680178 -36857081 + MIRb SINE MIR 213 273 -3 5 1467 975 132 15 90 chr5 115680201 115680401 -36856858 + B2_Mm2 SINE B2 1 185 -10 5 1467 1270 51 55 22 chr5 115680402 115680555 -36856704 + B2_Mm1a SINE B2 2 163 -30 5 1467 402 21 0 0 chr5 115680555 115680602 -36856657 + (TAAA)n Simple_repeat Simple_repeat 3 49 0 5 1467 1270 51 55 22 chr5 115680602 115680629 -36856630 + B2_Mm1a SINE B2 164 188 -5 5 1467 371 314 0 45 chr5 115680737 115680847 -36856412 - PB1D10 SINE Alu -12 105 1 5 1467 230 167 24 0 chr5 115680847 115680889 -36856370 - MIRc SINE MIR -113 155 113 5 1467 207 0 0 0 chr5 115681975 115681998 -36855261 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1467 734 319 29 21 chr5 115682028 115682268 -36854991 - MLT1A LTR MaLR -132 242 1 5 1467 265 271 71 168 chr5 115682300 115682455 -36854804 + B1F SINE Alu 1 140 -9 5 1467 244 226 14 114 chr5 115682475 115682545 -36854714 + ID4_ SINE ID 20 82 -1 5 1467 539 274 118 6 chr5 115682499 115682668 -36854591 + ID_B1 SINE B4 37 224 0 5 1467 567 0 0 0 chr5 115682939 115683002 -36854257 + (CAAAA)n Simple_repeat Simple_repeat 2 64 0 5 1467 375 78 0 0 chr5 115683135 115683186 -36854073 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1467 794 194 21 166 chr5 115683300 115683368 -36853891 + B3 SINE B2 1 35 -181 5 1467 1143 76 7 14 chr5 115683368 115683515 -36853744 - B1_Mus1 SINE Alu -1 147 2 5 1467 794 194 21 166 chr5 115683515 115683687 -36853572 + B3 SINE B2 36 206 -10 5 1467 589 180 137 25 chr5 115683962 115684139 -36853120 + B3 SINE B2 1 194 -1 5 1467 1394 62 22 0 chr5 115684142 115684320 -36852939 + B2_Mm2 SINE B2 2 183 -12 5 1467 21 0 0 0 chr5 115684343 115684364 -36852895 + AT_rich Low_complexity Low_complexity 1 21 0 5 1467 394 49 16 0 chr5 115684365 115684426 -36852833 + MusHAL1 LINE L1 2594 2655 -57 5 1467 295 299 48 88 chr5 115684668 115684753 -36852506 + ID SINE ID 2 80 -144 5 1467 377 292 0 30 chr5 115684753 115684852 -36852407 + PB1D9 SINE Alu 1 96 -24 5 1467 306 256 142 47 chr5 115684910 115685037 -36852222 - RSINE1 SINE B4 -25 140 2 5 1467 250 293 12 24 chr5 115686279 115686363 -36850896 + RSINE1 SINE B4 77 159 -6 5 1467 1481 39 34 0 chr5 115686787 115686966 -36850293 + B2_Mm1a SINE B2 2 186 -7 5 1467 875 102 101 1 chr5 115686967 115687126 -36850133 + B2_Mm1t SINE B2 13 190 -5 5 1467 383 269 32 21 chr5 115687156 115687251 -36850008 + PB1D7 SINE Alu 12 107 -13 5 1467 225 83 0 0 chr5 115687251 115687287 -36849972 + (T)n Simple_repeat Simple_repeat 1 36 0 5 1467 1094 76 0 20 chr5 115687291 115687439 -36849820 + B1_Mus1 SINE Alu 2 146 -2 5 1467 417 274 65 81 chr5 115687573 115687696 -36849563 + ID_B1 SINE B4 84 207 -85 5 1467 276 252 159 37 chr5 115688974 115689081 -36848178 + PB1D9 SINE Alu 1 120 0 5 1467 263 241 134 3 chr5 115689918 115690048 -36847211 + RLTR13D3 LTR ERVK 983 1066 -48 5 1467 331 301 65 0 chr5 115691053 115691068 -36846191 + B4 SINE B4 70 90 -202 5 1467 375 274 56 16 chr5 115691068 115691194 -36846065 + B1_Mur3 SINE Alu 3 133 -16 5 1467 226 193 325 0 chr5 115691345 115691428 -36845831 + ORR1C1 LTR MaLR 6 115 -263 5 1467 273 212 28 70 chr5 115691513 115691584 -36845675 + B3 SINE B2 57 124 -92 5 1467 213 282 279 9 chr5 115692132 115692243 -36845016 + B3A SINE B2 48 188 -10 5 1467 384 264 54 31 chr5 115692881 115693010 -36844249 + B1F SINE Alu 1 132 -17 5 1467 680 207 16 0 chr5 115693092 115693213 -36844046 - B1_Mur4 SINE Alu -15 135 13 5 1467 324 204 80 0 chr5 115693686 115693774 -36843485 - PB1D10 SINE Alu -8 109 15 5 1467 293 118 145 14 chr5 115694522 115694591 -36842668 + PB1D10 SINE Alu 40 117 0 5 1467 613 231 13 70 chr5 115695148 115695306 -36841953 + MTC LTR MaLR 1 149 -272 5 1467 673 196 163 28 chr5 115695630 115695808 -36841451 + B3 SINE B2 15 216 0 5 1467 303 140 0 0 chr5 115696618 115696668 -36840591 + (TCTCCC)n Simple_repeat Simple_repeat 3 52 0 5 1467 423 222 324 0 chr5 115697909 115698017 -36839242 + B1_Mur2 SINE Alu 1 143 -6 5 1467 429 66 0 0 chr5 115698044 115698105 -36839154 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1467 288 157 39 0 chr5 115698308 115698359 -36838900 + ID_B1 SINE B4 114 166 -58 5 1467 446 114 25 12 chr5 115698394 115698474 -36838785 + B1_Mur3 SINE Alu 68 148 -1 5 1467 632 138 168 16 chr5 115700459 115700584 -36836675 + B1_Mur3 SINE Alu 6 149 0 5 1467 591 265 7 29 chr5 115700716 115700856 -36836403 - ID_B1 SINE B4 -7 217 81 5 1467 517 200 255 13 chr5 115701642 115701799 -36835460 + ORR1D1 LTR MaLR 54 248 -126 5 1467 3227 33 5 20 chr5 115701884 115701961 -36835298 + MTA_Mm LTR MaLR 1 77 -319 5 1467 3528 20 5 0 chr5 115701961 115702355 -36834904 + MTA_Mm LTR MaLR 1 396 0 5 1467 9801 15 3 0 chr5 115702355 115703450 -36833809 + MTA_Mm-int LTR MaLR 1 1098 0 5 1467 3553 18 5 0 chr5 115703450 115703844 -36833415 + MTA_Mm LTR MaLR 1 396 0 5 1467 3227 33 5 20 chr5 115703844 115704166 -36833093 + MTA_Mm LTR MaLR 78 394 -2 5 1467 1809 63 20 4 chr5 115704167 115704420 -36832839 + MTA_Mm-int LTR MaLR 2 258 -840 5 1467 1448 48 19 5 chr5 115704411 115704618 -36832641 + MTA_Mm-int LTR MaLR 889 1098 0 5 1467 3319 41 5 2 chr5 115704618 115705013 -36832246 + MTA_Mm LTR MaLR 1 396 0 5 1467 1131 84 71 12 chr5 115705065 115705234 -36832025 + B2_Mm1a SINE B2 1 179 -14 5 1467 257 346 94 36 chr5 115706047 115706185 -36831074 + B3A SINE B2 39 184 -14 5 1467 805 181 135 43 chr5 115706267 115706452 -36830807 - B3 SINE B2 -13 203 2 5 1467 248 358 0 0 chr5 115707457 115707538 -36829721 - ID4_ SINE ID 0 83 3 5 1467 322 229 229 0 chr5 115707556 115707652 -36829607 + B1F1 SINE Alu 30 147 -2 5 1467 516 247 16 141 chr5 115707693 115707834 -36829425 - B3A SINE B2 -37 161 40 5 1467 1388 64 6 0 chr5 115707834 115708007 -36829252 + B2_Mm1a SINE B2 1 174 -19 5 1467 516 247 16 141 chr5 115708007 115708049 -36829210 - B3A SINE B2 -159 39 1 5 1467 551 195 31 39 chr5 115708559 115708687 -36828572 - B1_Mus2 SINE Alu -20 127 1 5 1467 1327 73 50 6 chr5 115708703 115708883 -36828376 - B2_Mm2 SINE B2 -7 188 1 5 1467 271 253 38 25 chr5 115709027 115709185 -36828074 + ORR1B1-int LTR MaLR 595 754 -755 5 1467 379 287 51 58 chr5 115709054 115709191 -36828068 + B4 SINE B4 69 204 -88 5 1467 925 90 0 0 chr5 115709086 115709208 -36828051 + B1_Mus2 SINE Alu 9 130 -17 5 1467 226 245 19 0 chr5 115709306 115709359 -36827900 + B1F1 SINE Alu 1 54 -95 5 1467 274 269 9 103 chr5 115710585 115710701 -36826558 + B4A SINE B4 50 154 -138 5 1467 312 218 73 113 chr5 115710602 115710631 -36826628 + MT2B LTR ERVL 139 162 -439 5 1467 526 202 98 32 chr5 115710631 115710754 -36826505 + B1_Mus2 SINE Alu 3 133 -14 5 1467 23 0 0 0 chr5 115710857 115710880 -36826379 + AT_rich Low_complexity Low_complexity 1 23 0 5 1467 216 274 13 40 chr5 115710960 115711036 -36826223 - B4A SINE B4 -148 144 71 5 1467 395 305 21 14 chr5 115711097 115711229 -36826030 + B1F SINE Alu 1 132 -15 5 1467 446 306 38 19 chr5 115711262 115711422 -36825837 - RSINE1 SINE B4 0 165 3 5 1467 321 276 197 22 chr5 115711450 115711587 -36825672 + B4A SINE B4 57 217 -75 5 1467 21 0 0 0 chr5 115711592 115711613 -36825646 + AT_rich Low_complexity Low_complexity 1 21 0 6 1467 1085 199 46 0 chr5 115711639 115711835 -36825424 + B3 SINE B2 5 209 -7 6 1467 568 252 16 8 chr5 115712302 115712430 -36824829 - ID_B1 SINE B4 -3 221 93 6 1467 635 147 35 35 chr5 115712528 115712641 -36824618 - PB1D9 SINE Alu -6 114 2 6 1467 562 301 82 48 chr5 115712718 115712987 -36824272 + B4A SINE B4 7 284 -8 6 1467 261 0 0 0 chr5 115713790 115713819 -36823440 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 6 1467 576 42 0 0 chr5 115713820 115713891 -36823368 + (GAGAA)n Simple_repeat Simple_repeat 3 73 0 6 1467 287 222 41 14 chr5 115713920 115713993 -36823266 + RSINE1 SINE B4 54 128 -37 6 1467 378 0 0 0 chr5 115713997 115714039 -36823220 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1467 1744 175 60 0 chr5 115714087 115714419 -36822840 + RMER19B LTR ERVK 522 873 -29 6 1467 1254 48 0 0 chr5 115714420 115714566 -36822693 + B1_Mm SINE Alu 2 147 0 6 1467 222 37 0 0 chr5 115714566 115714593 -36822666 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1467 229 284 11 90 chr5 115714643 115714732 -36822527 + MT2B LTR ERVL 162 243 -358 6 1467 501 224 19 0 chr5 115714657 115714764 -36822495 + PB1D9 SINE Alu 11 119 -1 6 1467 556 325 18 59 chr5 115714802 115714972 -36822287 + B3 SINE B2 1 163 -53 6 1467 207 69 0 0 chr5 115714972 115715001 -36822258 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1467 500 298 9 0 chr5 115715019 115715133 -36822126 + B3 SINE B2 1 115 -101 6 1467 374 265 98 0 chr5 115715217 115715319 -36821940 + PB1D7 SINE Alu 1 112 -8 6 1467 1219 61 0 0 chr5 115715371 115715518 -36821741 + B1_Mus1 SINE Alu 2 148 0 6 1467 216 158 0 0 chr5 115715518 115715556 -36821703 + A-rich Low_complexity Low_complexity 1 38 0 6 1467 25 0 0 0 chr5 115715624 115715649 -36821610 + AT_rich Low_complexity Low_complexity 1 25 0 6 1467 403 271 9 56 chr5 115715828 115715954 -36821305 - B1F SINE Alu -5 144 1 6 1467 788 210 7 28 chr5 115716110 115716252 -36821007 - RSINE1 SINE B4 -24 141 3 6 1467 738 256 45 23 chr5 115716613 115716789 -36820470 - B3 SINE B2 -36 180 1 6 1467 186 240 0 0 chr5 115716794 115716844 -36820415 + GA-rich Low_complexity Low_complexity 3 52 0 6 1467 207 0 0 0 chr5 115717189 115717212 -36820047 + (A)n Simple_repeat Simple_repeat 1 23 0 6 1467 401 297 0 26 chr5 115717660 115717774 -36819485 + B1F SINE Alu 32 142 -7 6 1467 314 274 42 42 chr5 115717811 115717929 -36819330 + B1F1 SINE Alu 1 118 -31 6 1467 1655 31 0 20 chr5 115717948 115718144 -36819115 - B2_Mm1a SINE B2 0 193 2 6 1467 237 248 240 29 chr5 115718255 115718359 -36818900 + B3 SINE B2 2 127 -89 6 1467 473 216 56 0 chr5 115719294 115719419 -36817840 - B1F1 SINE Alu -15 134 3 6 1467 784 114 129 8 chr5 115719456 115719580 -36817679 - B1_Mus2 SINE Alu -6 141 3 6 1467 526 249 214 6 chr5 115719581 115719759 -36817500 - B3 SINE B2 -1 215 1 6 1467 383 219 0 14 chr5 115720647 115720721 -36816538 - ID4 SINE ID -9 74 2 6 1467 467 256 77 58 chr5 115720777 115720984 -36816275 - Lx9 LINE L1 -176 7468 7258 6 1467 248 268 94 8 chr5 115721016 115721144 -36816115 + Lx9 LINE L1 7497 7635 -9 6 1467 728 161 12 4 chr5 115721146 115721282 -36815977 + B1_Mus1 SINE Alu 13 149 0 6 1467 30 27 0 0 chr5 115721527 115721564 -36815695 + AT_rich Low_complexity Low_complexity 1 37 0 6 1467 297 0 0 0 chr5 115721611 115721644 -36815615 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1467 325 276 136 62 chr5 115721975 115722137 -36815122 + MIRc SINE MIR 24 197 -71 6 1467 21 57 0 0 chr5 115722283 115722318 -36814941 + GC_rich Low_complexity Low_complexity 1 35 0 6 1467 262 277 7 28 chr5 115722382 115722523 -36814736 + (CGG)n Simple_repeat Simple_repeat 1 138 0 6 1467 273 75 0 0 chr5 115722629 115722669 -36814590 + (GGA)n Simple_repeat Simple_repeat 2 41 0 6 1467 370 264 113 0 chr5 115723083 115723189 -36814070 - B1_Mur1 SINE Alu -5 144 27 6 1467 318 219 0 27 chr5 115723222 115723297 -36813962 + B3 SINE B2 132 204 -12 6 1467 419 347 80 35 chr5 115723302 115723502 -36813757 + B4A SINE B4 81 289 -3 6 1467 969 157 14 0 chr5 115723894 115724041 -36813218 + B1_Mur4 SINE Alu 1 149 -1 6 1467 220 246 14 42 chr5 115724051 115724123 -36813136 + PB1D10 SINE Alu 48 117 0 6 1467 452 36 0 0 chr5 115724230 115724286 -36812973 + B1_Mus1 SINE Alu 1 56 -92 6 1467 249 180 0 0 chr5 115724288 115724338 -36812921 + A-rich Low_complexity Low_complexity 1 50 0 6 1467 1213 134 0 11 chr5 115724464 115724653 -36812606 + B2_Mm2 SINE B2 4 190 -5 6 1467 770 239 136 0 chr5 115724678 115724862 -36812397 - B3 SINE B2 -1 215 7 6 1467 2884 123 10 132 chr5 115724862 115725224 -36812035 + RLTR28 LTR ERVL 1 304 -220 6 1467 1030 103 7 0 chr5 115725224 115725370 -36811889 - B1_Mus1 SINE Alu 0 148 2 6 1467 2884 123 10 132 chr5 115725370 115725604 -36811655 + RLTR28 LTR ERVL 305 524 0 6 1467 604 267 7 14 chr5 115725626 115725774 -36811485 - B1_Mur1 SINE Alu 0 149 3 6 1467 495 0 0 0 chr5 115725816 115725871 -36811388 + (TC)n Simple_repeat Simple_repeat 1 55 0 6 1467 368 199 153 166 chr5 115725889 115726052 -36811207 - RSINE1 SINE B4 -1 164 4 6 1467 870 217 43 19 chr5 115726085 115726296 -36810963 + B3 SINE B2 1 216 0 6 1467 294 243 50 130 chr5 115726309 115726439 -36810820 + B4 SINE B4 94 219 -73 6 1467 378 0 0 0 chr5 115726439 115726481 -36810778 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 6 1467 294 243 50 130 chr5 115726481 115726511 -36810748 + B4 SINE B4 220 241 -51 6 1467 721 174 68 8 chr5 115726573 115726706 -36810553 - B1_Mur4 SINE Alu -1 149 9 6 1467 412 232 0 34 chr5 115726723 115726812 -36810447 - PB1D10 SINE Alu 0 117 32 6 1467 299 312 53 148 chr5 115726748 115726917 -36810342 - ID_B1 SINE B4 -48 176 24 6 1467 376 277 94 43 chr5 115726934 115727051 -36810208 - PB1 SINE Alu -2 125 3 6 1467 342 0 0 0 chr5 115727072 115727110 -36810149 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1467 2827 58 40 8 chr5 115727112 115727492 -36809767 + MTB_Mm LTR MaLR 13 404 -3 6 1467 243 0 0 0 chr5 115727492 115727519 -36809740 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1467 477 0 0 0 chr5 115727519 115727571 -36809688 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1467 1207 81 0 0 chr5 115728024 115728172 -36809087 - B1_Mus1 SINE Alu 0 148 1 6 1467 319 261 137 40 chr5 115728200 115728324 -36808935 + ID_B1 SINE B4 88 223 -1 6 1467 511 213 74 148 chr5 115728327 115728503 -36808756 + RSINE1 SINE B4 3 165 0 6 1467 42 0 0 0 chr5 115728515 115728557 -36808702 + AT_rich Low_complexity Low_complexity 1 42 0 6 1467 1008 111 7 0 chr5 115728560 115728704 -36808555 + B1_Mus1 SINE Alu 3 147 -1 6 1467 295 309 53 35 chr5 115728971 115729085 -36808174 + B3A SINE B2 68 183 -15 6 1467 696 233 0 0 chr5 115729105 115729277 -36807982 + (TA)n Simple_repeat Simple_repeat 2 173 0 6 1467 245 191 294 0 chr5 115729361 115729429 -36807830 + B1_Mur3 SINE Alu 2 89 -60 6 1467 631 129 69 53 chr5 115730138 115730269 -36806990 - B1_Mur3 SINE Alu -16 133 1 6 1467 502 280 54 45 chr5 115730464 115730685 -36806574 + ID_B1 SINE B4 1 223 -1 6 1467 222 37 0 0 chr5 115730766 115730793 -36806466 + (A)n Simple_repeat Simple_repeat 1 27 0 6 1467 900 67 8 0 chr5 115730793 115730913 -36806346 + B1_Mus1 SINE Alu 28 148 0 6 1467 451 195 0 24 chr5 115730976 115731060 -36806199 + B1_Mur2 SINE Alu 68 149 0 6 1467 1053 170 20 40 chr5 115731260 115731462 -36805797 + URR1B DNA MER1_type 26 223 -2 6 1467 594 183 74 30 chr5 115731462 115731576 -36805683 + B3 SINE B2 97 216 0 6 1467 536 279 58 116 chr5 115731608 115731903 -36805356 - Tigger6b DNA MER2_type -192 1405 1135 6 1467 1009 82 7 20 chr5 115731931 115732232 -36805027 + (TG)n Simple_repeat Simple_repeat 1 296 0 6 1467 470 196 94 43 chr5 115732245 115732362 -36804897 - RSINE1 SINE B4 -40 125 3 6 1467 589 140 0 0 chr5 115732785 115732892 -36804367 - B1_Mur4 SINE Alu 0 150 44 6 1467 270 136 0 0 chr5 115732915 115732959 -36804300 + (T)n Simple_repeat Simple_repeat 1 44 0 6 1467 1170 75 0 0 chr5 115732959 115733105 -36804154 - B1_Mus2 SINE Alu 0 147 2 6 1467 234 125 0 0 chr5 115733209 115733241 -36804018 - B1_Mus1 SINE Alu -115 33 2 6 1467 384 253 0 0 chr5 115733294 115733373 -36803886 + ID4_ SINE ID 2 80 -3 6 1467 1019 116 7 13 chr5 115733839 115733988 -36803271 - B1_Mur4 SINE Alu 0 150 3 6 1467 415 192 0 126 chr5 115733886 115734005 -36803254 - MT2B LTR ERVL -344 257 154 6 1467 1064 78 86 46 chr5 115734000 115734169 -36803090 - B2_Mm2 SINE B2 -1 194 19 6 1467 307 276 44 33 chr5 115734169 115734259 -36803000 + PB1D10 SINE Alu 1 91 -26 6 1467 1090 187 39 0 chr5 115734861 115735064 -36802195 - B3 SINE B2 -3 213 3 6 1467 180 77 0 0 chr5 115735065 115735091 -36802168 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1467 1264 41 0 0 chr5 115735101 115735247 -36802012 - B1_Mus2 SINE Alu 0 147 2 6 1467 563 212 195 0 chr5 115735305 115735423 -36801836 - RSINE1 SINE B4 -22 143 3 6 1467 482 153 0 71 chr5 115735464 115735568 -36801691 - B1_Mur4 SINE Alu 0 150 55 6 1467 952 93 22 0 chr5 115735592 115735731 -36801528 - B2_Mm1t SINE B2 -1 192 51 7 1467 1211 62 0 0 chr5 115735733 115735879 -36801380 + B1_Mm SINE Alu 2 147 0 7 1467 273 89 0 0 chr5 115736236 115736281 -36800978 + (A)n Simple_repeat Simple_repeat 1 45 0 7 1467 442 108 0 15 chr5 115736281 115736347 -36800912 - B2_Mm2 SINE B2 -129 66 2 7 1467 248 234 75 23 chr5 115736347 115736447 -36800812 - BC1_Mm scRNA scRNA -45 107 3 7 183 646 254 21 7 chr5 115736473 115736616 -36800643 + B1_Mur1 SINE Alu 1 145 -4 7 1468 1470 34 78 0 chr5 115737209 115737369 -36799890 + B2_Mm1a SINE B2 1 160 -33 7 1468 279 0 0 0 chr5 115737369 115737400 -36799859 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 7 1468 1470 34 78 0 chr5 115737400 115737418 -36799841 + B2_Mm1a SINE B2 161 191 -2 7 1468 366 280 100 25 chr5 115737420 115737593 -36799666 + B3A SINE B2 27 206 -10 7 1468 370 250 12 0 chr5 115737696 115737780 -36799479 + PB1D9 SINE Alu 4 88 -32 7 1468 978 159 206 22 chr5 115737811 115737991 -36799268 - B3 SINE B2 -1 215 3 7 1468 1285 27 0 13 chr5 115738300 115738449 -36798810 - B1_Mus1 SINE Alu 0 148 2 7 1468 515 296 44 44 chr5 115738504 115738663 -36798596 - RSINE1 SINE B4 0 165 7 7 1468 286 246 0 16 chr5 115738786 115738848 -36798411 + PB1D10 SINE Alu 18 78 -39 7 1468 958 26 0 0 chr5 115738844 115738959 -36798300 + B1_Mus2 SINE Alu 32 146 -1 7 1468 198 0 0 0 chr5 115738961 115738983 -36798276 + (CAAAAA)n Simple_repeat Simple_repeat 4 25 0 7 1468 278 296 0 53 chr5 115739075 115739150 -36798109 + B1F2 SINE Alu 1 71 -78 7 1468 261 139 0 0 chr5 115739183 115739219 -36798040 + ID_B1 SINE B4 135 170 -54 7 1468 1054 207 19 24 chr5 115739370 115739583 -36797676 - B3 SINE B2 -4 212 1 7 1468 722 68 323 8 chr5 115739700 115739833 -36797426 + B2_Mm2 SINE B2 1 175 -20 7 1468 799 74 46 0 chr5 115739843 115739951 -36797308 + B2_Mm2 SINE B2 2 114 -81 7 1468 313 300 105 23 chr5 115739960 115740093 -36797166 + L1MC LINE L1 5299 5442 -902 7 1468 417 277 165 24 chr5 115740137 115740307 -36796952 + B3A SINE B2 1 194 -4 7 1468 279 286 0 0 chr5 115740340 115740403 -36796856 + tRNA-Ala-GCA tRNA tRNA 6 68 -7 7 1468 232 263 79 0 chr5 115740518 115740594 -36796665 + ID4 SINE ID 2 83 0 7 1468 833 232 22 11 chr5 115741338 115741517 -36795742 - B3A SINE B2 -16 182 2 7 1468 231 114 0 0 chr5 115741527 115741562 -36795697 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1468 1285 74 0 0 chr5 115741945 115742107 -36795152 - B2_Mm2 SINE B2 -28 167 6 7 1468 228 111 0 0 chr5 115742113 115742149 -36795110 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1468 216 158 0 0 chr5 115742154 115742192 -36795067 + CT-rich Low_complexity Low_complexity 1 38 0 7 1468 236 185 203 0 chr5 115742198 115742268 -36794991 - B1_Mur4 SINE Alu 0 147 66 7 1468 215 375 0 10 chr5 115742825 115742922 -36794337 + CT-rich Low_complexity Low_complexity 5 100 0 7 1468 246 224 126 23 chr5 115742932 115743019 -36794240 + B4 SINE B4 71 166 -126 7 1468 465 193 7 0 chr5 115742958 115743048 -36794211 + PB1D9 SINE Alu 21 116 -33 7 1468 233 221 58 141 chr5 115743048 115743071 -36794188 + MT2B LTR ERVL 196 281 -320 7 1468 2130 148 105 3 chr5 115743146 115743526 -36793733 + RMER4B LTR ERVK 1 419 -166 7 1468 558 208 0 0 chr5 115743547 115743643 -36793616 - B1_Mus1 SINE Alu -50 98 3 7 1468 347 276 66 9 chr5 115743548 115743654 -36793605 - B4 SINE B4 -105 187 76 7 1468 570 67 0 0 chr5 115743746 115743821 -36793438 + (CA)n Simple_repeat Simple_repeat 2 76 0 7 1468 472 273 31 15 chr5 115743894 115743909 -36793350 - ID_B1 SINE B4 -21 203 130 7 1468 510 183 47 19 chr5 115743909 115744015 -36793244 - B1F SINE Alu -40 109 1 7 1468 342 288 81 61 chr5 115744039 115744055 -36793204 + ID_B1 SINE B4 73 222 -1 7 1468 681 183 107 0 chr5 115744055 115744186 -36793073 + B1_Mur4 SINE Alu 6 150 0 7 1468 914 153 126 0 chr5 115744273 115744456 -36792803 + B3 SINE B2 1 206 -10 7 1468 1180 37 0 0 chr5 115744469 115744603 -36792656 + B1_Mm SINE Alu 2 135 -12 7 1468 354 23 0 0 chr5 115744603 115744646 -36792613 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 7 1468 433 260 10 0 chr5 115745095 115745191 -36792068 + B1F SINE Alu 36 132 -17 7 1468 499 161 37 0 chr5 115745505 115745599 -36791660 - B1_Mur4 SINE Alu -5 145 46 7 1468 265 206 59 0 chr5 115746397 115746465 -36790794 + ID2 SINE ID 1 72 -11 7 1468 305 311 103 32 chr5 115746564 115746690 -36790569 + B3A SINE B2 61 195 -3 7 1468 226 288 0 29 chr5 115746723 115746791 -36790468 + B1_Mur1 SINE Alu 79 144 -5 7 1468 21 0 0 0 chr5 115746942 115746963 -36790296 + AT_rich Low_complexity Low_complexity 1 21 0 7 1468 332 291 47 95 chr5 115747480 115747549 -36789710 + ID_B1 SINE B4 79 149 -75 7 1468 1215 54 0 20 chr5 115747549 115747699 -36789560 + B1_Mus1 SINE Alu 2 148 0 7 1468 332 291 47 95 chr5 115747699 115747777 -36789482 + ID_B1 SINE B4 150 219 -5 7 1468 234 167 79 53 chr5 115748934 115749010 -36788249 - BC1_Mm scRNA scRNA -70 82 5 7 1468 513 186 129 26 chr5 115749172 115749288 -36787971 - B1_Mur3 SINE Alu 0 149 22 7 1468 1104 50 50 0 chr5 115749793 115749933 -36787326 + B1_Mus2 SINE Alu 1 147 0 7 1468 32 26 0 0 chr5 115750980 115751019 -36786240 + GC_rich Low_complexity Low_complexity 1 39 0 7 1468 255 241 154 44 chr5 115751416 115751507 -36785752 + MER45R DNA Tip100 9 109 -1472 7 1468 25 0 0 0 chr5 115752062 115752087 -36785172 + AT_rich Low_complexity Low_complexity 1 25 0 7 1468 506 272 139 39 chr5 115752105 115752285 -36784974 + ID_B1 SINE B4 17 214 -10 7 1468 393 21 0 0 chr5 115752417 115752441 -36784818 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1468 1253 54 0 0 chr5 115752441 115752588 -36784671 + B1_Mus2 SINE Alu 1 147 0 7 1468 393 21 0 0 chr5 115752588 115752611 -36784648 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1468 743 253 75 5 chr5 115752611 115752798 -36784461 - B3 SINE B2 -16 200 1 7 1468 628 324 12 0 chr5 115752831 115753001 -36784258 - ID_B1 SINE B4 -51 173 2 7 1468 482 290 13 33 chr5 115753365 115753515 -36783744 + RSINE1 SINE B4 2 148 -17 7 1468 487 183 138 24 chr5 115753588 115753711 -36783548 - B1_Mur2 SINE Alu -8 141 5 7 1468 1210 55 0 7 chr5 115753743 115753891 -36783368 + B1_Mus1 SINE Alu 2 148 0 7 1468 214 325 85 54 chr5 115753924 115754054 -36783205 - ID_B1 SINE B4 -11 213 80 7 1468 634 241 88 29 chr5 115754340 115754511 -36782748 - B3A SINE B2 -16 182 2 7 1468 395 345 21 48 chr5 115754515 115754701 -36782558 + MTEa LTR MaLR 1 181 -198 7 1468 212 327 19 47 chr5 115754709 115754815 -36782444 + BC1_Mm scRNA scRNA 1 103 -49 7 1468 354 274 0 31 chr5 115754952 115755050 -36782209 + PB1D10 SINE Alu 3 97 -20 7 1468 368 185 148 0 chr5 115755050 115755131 -36782128 + RSINE1 SINE B4 30 122 -43 7 1468 1416 65 48 0 chr5 115755176 115755362 -36781897 - B2_Mm2 SINE B2 0 195 1 7 1468 787 274 31 45 chr5 115755480 115755702 -36781557 - ID_B1 SINE B4 -5 219 1 7 1468 212 0 0 35 chr5 115755738 115755767 -36781492 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1468 1201 29 7 0 chr5 115755767 115755905 -36781354 - B1_Mus1 SINE Alu -8 140 2 7 1468 394 280 144 0 chr5 115755924 115756049 -36781210 - RSINE1 SINE B4 -12 153 11 7 1468 667 214 8 0 chr5 115756155 115756281 -36780978 + B1_Mur4 SINE Alu 1 127 -23 7 1468 1158 79 0 0 chr5 115756319 115756459 -36780800 + B1_Mus2 SINE Alu 1 140 -7 7 1468 198 0 0 0 chr5 115756461 115756483 -36780776 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 7 1468 1081 184 240 31 chr5 115756501 115756895 -36780364 + RMER4B LTR ERVK 54 452 -14 7 1468 1661 16 21 0 chr5 115756916 115757104 -36780155 + B2_Mm1a SINE B2 2 193 0 7 1468 291 114 0 0 chr5 115757127 115757171 -36780088 + (A)n Simple_repeat Simple_repeat 1 44 0 7 1468 294 317 69 0 chr5 115757189 115757290 -36779969 - PB1D10 SINE Alu -8 109 2 7 1468 218 367 51 0 chr5 115757306 115757404 -36779855 - PB1 SINE Alu -4 123 21 7 1468 272 371 52 19 chr5 115757548 115757702 -36779557 + Charlie4z DNA MER1_type 5 163 -4 7 1468 360 0 0 0 chr5 115757988 115758028 -36779231 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1468 381 251 147 21 chr5 115758155 115758341 -36778918 - MIRb SINE MIR 0 268 57 7 1468 373 269 126 40 chr5 115758705 115758742 -36778517 + CYRA11_Mm Unknown Y-chromosome 132 183 -434 7 1468 1120 188 56 0 chr5 115758742 115758955 -36778304 - URR1A DNA MER1_type -1 225 1 7 1468 678 110 254 0 chr5 115759664 115759782 -36777477 - B1_Mus1 SINE Alu 0 148 1 7 1468 653 281 85 6 chr5 115759832 115759997 -36777262 + B4A SINE B4 41 218 -74 7 1468 511 146 37 0 chr5 115760007 115760089 -36777170 + BC1_Mm scRNA scRNA 2 86 -66 7 1468 686 168 40 8 chr5 115760120 115760246 -36777013 - B1_Mus1 SINE Alu -18 130 1 7 1468 411 271 28 9 chr5 115760264 115760372 -36776887 + PB1D10 SINE Alu 1 110 -7 7 1468 409 275 60 138 chr5 115760463 115760575 -36776684 - MTE2a LTR MaLR -88 291 183 7 1468 4113 123 52 21 chr5 115760575 115761303 -36775956 + RMER17A LTR ERVK 1 751 0 7 1468 409 275 60 138 chr5 115761303 115761422 -36775837 - MTE2a LTR MaLR -197 182 78 7 1468 232 348 53 9 chr5 115761735 115761848 -36775411 + PB1D7 SINE Alu 2 119 -1 7 1468 670 179 196 6 chr5 115761971 115762134 -36775125 + B2_Mm2 SINE B2 1 194 -1 8 1468 697 261 52 0 chr5 115762142 115762295 -36774964 + B3A SINE B2 2 162 -36 8 1468 256 224 21 96 chr5 115762385 115762479 -36774780 + PB1 SINE Alu 21 107 -20 8 1468 687 304 146 47 chr5 115762479 115762621 -36774638 - L2 LINE L2 -714 2705 2566 8 1468 376 257 80 27 chr5 115762621 115762733 -36774526 + PB1 SINE Alu 3 120 -7 8 1468 687 304 146 47 chr5 115762733 115762994 -36774265 - L2 LINE L2 -854 2565 2262 8 1468 210 232 55 55 chr5 115763212 115763285 -36773974 - ID SINE ID -147 77 5 8 1468 519 207 86 8 chr5 115763351 115763468 -36773791 - B1F2 SINE Alu -7 142 17 8 1468 390 317 105 7 chr5 115763437 115763580 -36773679 - RSINE1 SINE B4 -6 159 3 8 1468 278 293 0 0 chr5 115763580 115763662 -36773597 - ID_B1 SINE B4 -66 158 77 8 1468 32 0 0 0 chr5 115764216 115764248 -36773011 + AT_rich Low_complexity Low_complexity 1 32 0 8 1468 1154 254 150 69 chr5 115764321 115764430 -36772829 + RMER15 LTR ERVL 27 159 -416 8 1468 920 156 0 39 chr5 115764430 115764583 -36772676 + B1_Mus1 SINE Alu 1 147 -1 8 1468 1154 254 150 69 chr5 115764583 115764981 -36772278 + RMER15 LTR ERVL 160 575 0 8 1468 611 251 19 70 chr5 115765154 115765245 -36772014 - MTD LTR MaLR -119 302 213 8 1468 1088 65 36 0 chr5 115765245 115765383 -36771876 - B1_Mus2 SINE Alu 0 147 5 8 1468 611 255 19 70 chr5 115765383 115765483 -36771776 - MTD LTR MaLR -209 212 117 8 1468 548 176 151 28 chr5 115765647 115765811 -36771448 - B3 SINE B2 -10 185 6 8 1468 180 0 0 0 chr5 115765828 115765848 -36771411 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1468 1119 89 0 7 chr5 115765872 115766019 -36771240 - B1_Mus1 SINE Alu -1 147 2 8 1468 314 284 151 137 chr5 115766078 115766199 -36771060 - B4 SINE B4 -3 289 1 8 1468 472 274 59 5 chr5 115766199 115766363 -36770896 - B3A SINE B2 -11 184 1 8 1468 283 316 12 12 chr5 115766456 115766536 -36770723 - ID4_ SINE ID -2 81 2 8 1468 376 257 204 0 chr5 115766539 115766652 -36770607 - ID_B1 SINE B4 -9 215 80 8 1468 245 296 71 36 chr5 115766671 115766783 -36770476 - PB1D10 SINE Alu -1 116 1 8 1468 269 324 6 94 chr5 115767756 115767916 -36769343 + L2c LINE L2 3012 3160 -227 8 1468 873 240 5 14 chr5 115768135 115768346 -36768913 + ID_B1 SINE B4 1 209 -15 8 1468 349 316 0 113 chr5 115768356 115768506 -36768753 + RSINE1 SINE B4 1 133 -32 8 1468 37 0 0 0 chr5 115768506 115768543 -36768716 + AT_rich Low_complexity Low_complexity 1 37 0 8 1468 410 213 53 153 chr5 115768544 115768694 -36768565 + B1_Mur1 SINE Alu 2 136 -13 8 1468 841 141 16 0 chr5 115768775 115768896 -36768363 + B1_Mur3 SINE Alu 19 141 -8 8 1468 243 0 0 0 chr5 115768897 115768924 -36768335 + (CTAA)n Simple_repeat Simple_repeat 3 29 0 8 1468 599 225 85 0 chr5 115768925 115769054 -36768205 + B1_Mur2 SINE Alu 6 145 -4 8 1468 857 19 0 9 chr5 115769235 115769343 -36767916 + (TC)n Simple_repeat Simple_repeat 2 108 0 8 1468 406 208 117 124 chr5 115770031 115770168 -36767091 - B1F2 SINE Alu 0 149 14 8 1468 351 0 0 0 chr5 115770180 115770219 -36767040 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 8 1468 1351 38 0 0 chr5 115770219 115770378 -36766881 - B2_Mm1a SINE B2 -33 160 2 8 1468 2202 130 0 12 chr5 115770409 115770751 -36766508 - ORR1A1 LTR MaLR -8 338 1 8 1468 22 0 0 0 chr5 115770802 115770824 -36766435 + AT_rich Low_complexity Low_complexity 1 22 0 8 1468 3321 26 13 13 chr5 115770874 115771270 -36765989 + MTA_Mm LTR MaLR 1 396 0 8 1468 9722 16 4 0 chr5 115771270 115772364 -36764895 + MTA_Mm-int LTR MaLR 1 1098 0 8 1468 3156 30 7 94 chr5 115772364 115772487 -36764772 + MTA_Mm LTR MaLR 1 115 -281 8 1468 1596 43 0 0 chr5 115772487 115772674 -36764585 + B2_Mm1a SINE B2 2 188 -5 8 1468 3156 30 7 94 chr5 115772674 115772984 -36764275 + MTA_Mm LTR MaLR 116 396 0 8 1468 511 310 25 31 chr5 115773548 115773711 -36763548 - RSINE1 SINE B4 0 165 4 8 1468 259 289 88 82 chr5 115773804 115773974 -36763285 - B4 SINE B4 -121 171 1 8 1468 1507 64 5 0 chr5 115774487 115774674 -36762585 - B2_Mm1a SINE B2 -4 189 2 8 1468 569 177 24 81 chr5 115774699 115774822 -36762437 - PB1D9 SINE Alu 0 120 5 8 1468 225 283 0 0 chr5 115775197 115775250 -36762009 - ID_B1 SINE B4 -21 203 151 8 1468 1260 47 0 0 chr5 115775326 115775474 -36761785 - B1_Mus1 SINE Alu 0 148 1 8 1468 411 91 0 25 chr5 115775480 115775559 -36761700 - L1_Mus2 LINE L1 0 6566 6490 8 1468 531 206 0 0 chr5 115775559 115775661 -36761598 - B1_Mur3 SINE Alu -1 148 47 8 1468 855 172 204 11 chr5 115775744 115775920 -36761339 - B3 SINE B2 -6 210 1 8 1468 282 343 9 38 chr5 115776071 115776177 -36761082 - PB1D10 SINE Alu -6 111 9 8 1468 239 361 10 10 chr5 115776097 115776195 -36761064 - ID_B1 SINE B4 -55 169 72 8 1468 1765 159 92 42 chr5 115776322 115776703 -36760556 + RMER10A LTR ERVL 1 400 -42 8 1468 418 215 0 79 chr5 115776709 115776810 -36760449 - B1F2 SINE Alu -52 97 5 8 1468 300 252 20 13 chr5 115777208 115777361 -36759898 + (CGG)n Simple_repeat Simple_repeat 3 156 0 8 1468 182 105 26 0 chr5 115777555 115777593 -36759666 + (CCCCCT)n Simple_repeat Simple_repeat 3 41 0 8 1468 208 135 0 0 chr5 115778185 115778222 -36759037 + (TTTTTA)n Simple_repeat Simple_repeat 5 41 0 8 1468 21 0 0 0 chr5 115778522 115778543 -36758716 + AT_rich Low_complexity Low_complexity 1 21 0 8 1468 511 209 9 45 chr5 115779050 115779160 -36758099 - PB1D9 SINE Alu -3 117 12 8 1468 288 259 11 86 chr5 115779080 115779173 -36758086 - MT2B LTR ERVL -353 248 163 8 1468 578 188 54 61 chr5 115779205 115779352 -36757907 - B3 SINE B2 -2 214 69 8 1468 216 189 173 13 chr5 115779396 115779471 -36757788 - PB1D7 SINE Alu -7 113 27 8 1468 634 162 294 39 chr5 115779560 115779740 -36757519 - URR1A DNA MER1_type 0 226 1 8 1468 571 297 17 33 chr5 115779853 115780034 -36757225 - B3 SINE B2 -38 178 1 8 1468 802 114 122 0 chr5 115780874 115781005 -36756254 - B1_Mur4 SINE Alu 0 150 4 8 1468 230 229 21 0 chr5 115781362 115781410 -36755849 - Tigger9a DNA Tigger -230 502 454 8 1468 246 74 36 18 chr5 115782822 115782877 -36754382 + (TTTTA)n Simple_repeat Simple_repeat 1 56 0 8 1468 435 299 12 111 chr5 115783257 115783419 -36753840 - B3A SINE B2 -1 197 52 8 1468 501 242 112 45 chr5 115783474 115783608 -36753651 - B1_Mus2 SINE Alu -2 145 3 8 1468 416 245 78 0 chr5 115783715 115783817 -36753442 + B1F SINE Alu 11 120 -29 8 1468 345 47 0 0 chr5 115783982 115784025 -36753234 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1468 255 312 36 88 chr5 115785076 115785213 -36752046 + MER102a DNA MER1_type 1 130 -200 8 1468 666 220 88 78 chr5 115786006 115786198 -36751061 - B3A SINE B2 -4 194 1 8 1468 1197 74 0 0 chr5 115786773 115786921 -36750338 + B1_Mus1 SINE Alu 1 148 0 8 1468 967 205 35 35 chr5 115787114 115787311 -36749948 - B3 SINE B2 -19 197 1 8 1468 472 189 35 118 chr5 115787350 115787494 -36749765 - B3A SINE B2 -66 132 1 8 1468 321 289 211 12 chr5 115787642 115787803 -36749456 + MER105 DNA DNA 8 200 -4 8 1468 1493 53 27 0 chr5 115788109 115788297 -36748962 + B2_Mm2 SINE B2 1 193 -2 8 1468 807 200 13 32 chr5 115788312 115788467 -36748792 - RSINE1 SINE B4 -2 163 12 8 1468 1227 34 0 7 chr5 115788911 115789057 -36748202 + B1_Mus2 SINE Alu 3 147 0 8 1468 475 308 57 23 chr5 115789066 115789242 -36748017 + B3A SINE B2 1 182 -16 8 1468 646 280 7 27 chr5 115789562 115789709 -36747550 - RSINE1 SINE B4 -6 159 16 8 1468 194 231 76 15 chr5 115790671 115790737 -36746522 - L2 LINE L2 -530 2889 2820 8 1468 977 102 13 13 chr5 115791636 115791785 -36745474 + B1_Mur4 SINE Alu 2 150 0 8 1468 403 255 9 67 chr5 115791797 115791902 -36745357 - RSINE1 SINE B4 -32 133 35 8 1468 212 0 36 0 chr5 115791906 115791934 -36745325 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 8 1468 392 221 93 0 chr5 115792444 115792530 -36744729 + PB1D9 SINE Alu 22 115 -5 8 1468 286 247 99 0 chr5 115794077 115794158 -36743101 - ID_B1 SINE B4 -128 96 8 8 1468 327 250 152 0 chr5 115794167 115794259 -36743000 - PB1D10 SINE Alu -5 112 7 8 1468 1081 219 180 34 chr5 115794267 115794589 -36742670 - ORR1D1 LTR MaLR -1 373 5 8 1468 275 318 0 0 chr5 115794626 115794714 -36742545 - RSINE1 SINE B4 -63 102 15 8 1468 725 177 35 0 chr5 115795102 115795243 -36742016 - B1_Mus1 SINE Alu -2 146 1 8 1468 215 255 78 0 chr5 115795343 115795394 -36741865 - B1F SINE Alu -16 133 79 8 1468 964 115 82 49 chr5 115796073 115796256 -36741003 - B2_Mm2 SINE B2 0 195 7 8 1468 454 226 146 76 chr5 115796306 115796464 -36740795 + B3A SINE B2 10 178 -15 8 1468 1259 80 0 0 chr5 115796709 115796872 -36740387 + B2_Mm2 SINE B2 3 165 -30 8 1468 1174 58 0 0 chr5 115796875 115797013 -36740246 + B1_Mus1 SINE Alu 1 138 -10 8 1468 180 0 0 0 chr5 115797013 115797033 -36740226 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1468 208 143 0 0 chr5 115797051 115797086 -36740173 + (A)n Simple_repeat Simple_repeat 1 35 0 8 1468 462 271 90 0 chr5 115797151 115797273 -36739986 - B1F2 SINE Alu -11 138 6 8 1468 355 149 40 26 chr5 115797281 115797357 -36739902 - B1_Mur2 SINE Alu 0 149 73 8 1468 467 256 119 51 chr5 115797368 115797545 -36739714 - B3A SINE B2 -9 189 1 8 1468 262 207 0 94 chr5 115797774 115797838 -36739421 + MER20 DNA MER1_type 84 141 -78 8 1468 495 217 92 11 chr5 115797836 115797968 -36739291 - B1_Mus1 SINE Alu 0 149 14 8 1468 234 0 0 0 chr5 115798085 115798111 -36739148 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1468 233 304 92 49 chr5 115799388 115799530 -36737729 + L2a LINE L2 3279 3426 0 9 1468 330 26 0 0 chr5 115799720 115799759 -36737500 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 9 1468 524 203 72 16 chr5 115799773 115799898 -36737361 + B1_Mur1 SINE Alu 18 149 0 9 1468 3510 23 8 0 chr5 115799912 115800305 -36736954 + MTA_Mm LTR MaLR 1 396 0 9 1468 385 194 0 0 chr5 115800337 115800399 -36736860 + PB1D7 SINE Alu 47 108 -12 9 1468 420 269 37 0 chr5 115800446 115800554 -36736705 + B1_Mur1 SINE Alu 38 149 0 9 1468 1163 88 0 0 chr5 115800653 115800800 -36736459 + B1_Mus2 SINE Alu 1 147 0 9 1468 1015 93 72 0 chr5 115800821 115800960 -36736299 + B1_Mur4 SINE Alu 2 150 0 9 1468 701 257 44 6 chr5 115800990 115801170 -36736089 - B3A SINE B2 -7 191 5 9 1468 1490 49 27 0 chr5 115801244 115801427 -36735832 - B2_Mm2 SINE B2 -6 189 2 9 1468 460 265 93 29 chr5 115801463 115801603 -36735656 - B3 SINE B2 -11 205 57 9 1468 255 200 143 0 chr5 115801587 115801657 -36735602 - B1_Mus1 SINE Alu -68 80 1 9 1468 642 218 53 0 chr5 115801662 115801795 -36735464 - B1_Mur1 SINE Alu -3 146 7 9 1468 305 363 82 6 chr5 115801696 115801854 -36735405 - B4 SINE B4 -95 197 28 9 1468 283 214 87 33 chr5 115801860 115801952 -36735307 - ID_B1 SINE B4 0 224 128 9 1468 264 338 7 29 chr5 115802192 115802329 -36734930 + L2a LINE L2 2973 3106 -320 9 1468 385 252 159 26 chr5 115802355 115802506 -36734753 - B4A SINE B4 -13 279 109 9 1468 388 191 180 51 chr5 115802517 115802668 -36734591 + RMER19C LTR ERVK 25 231 -380 9 1468 717 43 106 0 chr5 115802705 115802799 -36734460 - B2_Mm2 SINE B2 -90 105 2 9 1468 2096 159 50 24 chr5 115802800 115803181 -36734078 + RMER19C LTR ERVK 219 609 -2 9 1468 1737 16 0 0 chr5 115803181 115803373 -36733886 + B2_Mm1a SINE B2 2 193 0 9 1468 1176 62 21 0 chr5 115803381 115803525 -36733734 + B1_Mus2 SINE Alu 1 147 0 9 1468 489 224 13 6 chr5 115803525 115803682 -36733577 + (TA)n Simple_repeat Simple_repeat 2 159 0 9 1468 222 200 0 0 chr5 115803736 115803776 -36733483 - B1_Mus1 SINE Alu -97 51 12 9 1468 376 297 164 29 chr5 115803797 115804005 -36733254 + L2a LINE L2 3135 3370 -56 9 1468 240 273 67 22 chr5 115804262 115804352 -36732907 + PB1D10 SINE Alu 1 94 -23 9 1468 1264 76 47 0 chr5 115804404 115804576 -36732683 + B2_Mm2 SINE B2 2 181 -14 9 1468 597 14 0 0 chr5 115804602 115804672 -36732587 + (GA)n Simple_repeat Simple_repeat 1 70 0 9 1468 2761 61 3 6 chr5 115804770 115805117 -36732142 + L1_Mus1 LINE L1 6222 6567 0 9 1468 421 266 19 39 chr5 115805923 115806089 -36731170 - MIR SINE MIR -83 185 21 9 1468 302 247 114 74 chr5 115806116 115806291 -36730968 + B3A SINE B2 1 182 -16 9 1468 481 314 14 14 chr5 115806343 115806485 -36730774 + RSINE1 SINE B4 24 165 0 9 1468 1034 58 65 0 chr5 115806532 115806670 -36730589 + B1_Mus2 SINE Alu 1 147 0 9 1468 242 203 12 96 chr5 115806731 115806811 -36730448 + PB1D10 SINE Alu 51 125 -2 9 1468 555 90 0 0 chr5 115806812 115806890 -36730369 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 9 1468 598 149 158 0 chr5 115806893 115807007 -36730252 + B1_Mur2 SINE Alu 5 136 -13 9 1468 345 109 0 0 chr5 115807238 115807302 -36729957 + (G)n Simple_repeat Simple_repeat 1 64 0 9 1468 238 310 162 34 chr5 115807304 115807421 -36729838 + MIR3 SINE MIR 1 132 -76 9 1468 1214 34 0 33 chr5 115807477 115807489 -36729770 - B1_Mm SINE Alu -2 145 138 9 1468 203 0 0 36 chr5 115807489 115807517 -36729742 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 9 1468 1214 34 0 33 chr5 115807517 115807654 -36729605 - B1_Mm SINE Alu -10 137 1 9 1468 552 174 130 16 chr5 115807706 115807829 -36729430 - B1F2 SINE Alu -1 148 12 9 1468 229 228 138 54 chr5 115807714 115807844 -36729415 - B4A SINE B4 -72 220 80 9 1468 604 312 80 5 chr5 115807898 115808098 -36729161 + ID_B1 SINE B4 8 222 -2 9 1468 1163 78 0 0 chr5 115808111 115808253 -36729006 + B1_Mus1 SINE Alu 2 143 -5 9 1468 795 241 69 5 chr5 115808318 115808506 -36728753 + B3 SINE B2 16 215 -1 9 1468 1184 75 0 0 chr5 115808523 115808669 -36728590 + B1_Mus1 SINE Alu 3 148 0 9 1468 264 263 0 146 chr5 115809275 115809364 -36727895 + PB1D10 SINE Alu 1 76 -41 9 1468 462 148 10 93 chr5 115809367 115809464 -36727795 + PB1D9 SINE Alu 16 104 -16 9 1468 445 274 30 45 chr5 115809499 115809633 -36727626 + B1F SINE Alu 17 148 -1 9 1468 331 333 10 0 chr5 115809638 115809737 -36727522 + PB1D9 SINE Alu 14 113 -7 9 1468 561 136 0 0 chr5 115809765 115809846 -36727413 + ID4 SINE ID 3 83 0 9 1468 759 249 50 28 chr5 115809915 115810097 -36727162 + ID_B1 SINE B4 25 210 -14 9 1468 366 42 0 0 chr5 115810319 115810367 -36726892 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1468 629 211 47 15 chr5 115810449 115810644 -36726615 - B3 SINE B2 -1 194 2 9 1468 399 205 39 0 chr5 115810646 115810724 -36726535 - PB1D10 SINE Alu -1 116 36 9 1468 345 125 0 0 chr5 115810724 115810780 -36726479 + (TCC)n Simple_repeat Simple_repeat 3 58 0 9 1468 391 256 11 11 chr5 115810869 115810960 -36726299 - RSINE1 SINE B4 -31 134 44 9 1468 336 125 0 0 chr5 115810964 115811028 -36726231 + (T)n Simple_repeat Simple_repeat 1 64 0 9 1468 1244 41 0 0 chr5 115811028 115811175 -36726084 - B1_Mm SINE Alu 0 147 1 9 1468 526 273 68 139 chr5 115811258 115811568 -36725691 + B4 SINE B4 5 292 0 9 1468 1081 57 35 14 chr5 115811714 115811857 -36725402 + B1_Mus1 SINE Alu 2 147 -1 9 1468 255 231 0 0 chr5 115811857 115811909 -36725350 + ID_B1 SINE B4 173 224 0 9 1468 255 150 0 155 chr5 115812038 115812109 -36725150 + B3 SINE B2 157 216 0 9 1468 599 171 22 28 chr5 115812159 115812339 -36724920 + GA-rich Low_complexity Low_complexity 2 180 0 9 1468 1673 31 0 5 chr5 115812634 115812828 -36724431 - B2_Mm1a SINE B2 0 193 1 9 1468 398 332 159 16 chr5 115812987 115813351 -36723908 + L2 LINE L2 2665 3080 -339 9 1468 297 208 10 30 chr5 115813351 115813450 -36723809 + CT-rich Low_complexity Low_complexity 6 102 0 9 1468 285 218 0 0 chr5 115813671 115813726 -36723533 + B1F2 SINE Alu 2 56 -93 9 1468 258 32 0 0 chr5 115813734 115813765 -36723494 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1468 1170 43 0 7 chr5 115813765 115813905 -36723354 - B1_Mus1 SINE Alu -9 139 1 9 1468 1528 52 0 10 chr5 115813911 115814105 -36723154 - B2_Mm1a SINE B2 -1 192 1 9 1468 548 204 0 28 chr5 115814107 115814213 -36723046 - PB1D9 SINE Alu -1 119 17 9 1468 280 287 212 25 chr5 115814112 115814230 -36723029 - ID_B1 SINE B4 -4 220 81 9 1468 276 222 16 16 chr5 115814230 115814294 -36722965 + PB1D10 SINE Alu 54 117 0 9 1468 194 197 29 0 chr5 115814309 115814362 -36722897 - MIRb SINE MIR -185 91 37 9 1468 2549 134 7 65 chr5 115814600 115814682 -36722577 + MTC LTR MaLR 1 77 -344 9 1468 1529 58 5 5 chr5 115814682 115814872 -36722387 + B2_Mm2 SINE B2 1 190 -5 9 1468 2549 134 7 65 chr5 115814872 115815236 -36722023 + MTC LTR MaLR 78 421 0 9 1468 5303 136 196 39 chr5 115815237 115815388 -36721871 + MTC-int LTR MaLR 2 165 -1093 9 1468 850 169 28 14 chr5 115815388 115815532 -36721727 + B1_Mus1 SINE Alu 3 148 0 9 1468 5303 136 196 39 chr5 115815532 115816466 -36720793 + MTC-int LTR MaLR 166 1258 0 9 1468 1390 134 22 0 chr5 115816466 115816689 -36720570 + MTC LTR MaLR 1 228 -193 9 1468 833 99 58 0 chr5 115816682 115816803 -36720456 + B2_Mm2 SINE B2 68 195 0 9 1468 1240 54 0 0 chr5 115816806 115816953 -36720306 + B1_Mus2 SINE Alu 1 147 0 9 1468 1643 187 3 0 chr5 115816962 115817246 -36720013 - MT2A LTR ERVL -71 462 178 9 1468 664 196 0 0 chr5 115817247 115817359 -36719900 - B1_Mur3 SINE Alu -25 124 13 9 1468 519 191 60 17 chr5 115817338 115817455 -36719804 - MT2A LTR ERVL -328 205 84 9 1468 525 143 12 12 chr5 115817485 115817570 -36719689 - MT2A LTR ERVL -444 89 5 9 1468 369 0 0 0 chr5 115817583 115817624 -36719635 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1468 807 187 45 0 chr5 115817633 115817767 -36719492 - B3 SINE B2 -76 140 1 9 1468 405 0 0 0 chr5 115817783 115817828 -36719431 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1468 1008 235 42 5 chr5 115817887 115818101 -36719158 - ID_B1 SINE B4 -1 223 2 9 1468 318 162 0 0 chr5 115818115 115818189 -36719070 + T-rich Low_complexity Low_complexity 1 74 0 9 1468 328 314 8 69 chr5 115818191 115818321 -36718938 - B4 SINE B4 -69 223 102 9 1468 569 174 0 0 chr5 115818353 115818445 -36718814 - B1_Mus1 SINE Alu -55 93 2 9 1468 286 249 63 125 chr5 115818547 115818748 -36718511 - B4 SINE B4 -81 211 24 9 1468 356 280 11 11 chr5 115819130 115819224 -36718035 - RSINE1 SINE B4 -71 94 1 9 1468 369 250 135 0 chr5 115819225 115819329 -36717930 - ID_B1 SINE B4 -2 222 105 9 1468 543 249 2 15 chr5 115819345 115819809 -36717450 + (CA)n Simple_repeat Simple_repeat 1 457 0 9 1468 220 172 11 44 chr5 115819936 115820027 -36717232 + CT-rich Low_complexity Low_complexity 4 91 0 9 1468 331 278 28 9 chr5 115820122 115820231 -36717028 - PB1D10 SINE Alu -6 111 1 9 1468 507 233 25 17 chr5 115820394 115820512 -36716747 - ID_B1 SINE B4 -1 223 105 9 1468 451 259 62 35 chr5 115820512 115820538 -36716721 - B1F SINE Alu -1 148 1 9 1468 984 166 198 0 chr5 115820646 115820833 -36716426 + URR1B DNA MER1_type 1 224 -1 9 1468 539 288 15 9 chr5 115821036 115821209 -36716050 + MER5A DNA MER1_type 9 177 -12 9 1468 445 101 179 19 chr5 115821313 115821424 -36715835 - B2_Mm2 SINE B2 -1 192 47 9 1468 1336 90 11 0 chr5 115821437 115821614 -36715645 - B2_Mm1t SINE B2 -14 179 1 9 1468 536 283 79 79 chr5 115822128 115822343 -36714916 + ID_B1 SINE B4 1 215 -9 1 1468 216 0 0 0 chr5 115822363 115822387 -36714872 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1468 725 191 0 70 chr5 115822434 115822592 -36714667 + B1_Mur1 SINE Alu 1 147 -2 1 1468 468 222 114 34 chr5 115822623 115822772 -36714487 + RSINE1 SINE B4 5 165 0 1 1468 735 248 7 7 chr5 115822839 115822985 -36714274 + ID_B1 SINE B4 57 202 -22 1 1468 432 0 0 0 chr5 115823012 115823060 -36714199 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1468 259 301 60 0 chr5 115823081 115823164 -36714095 + PB1D10 SINE Alu 29 116 -1 1 1468 500 202 101 0 chr5 115823228 115823327 -36713932 + B1_Mur4 SINE Alu 42 150 0 1 1468 410 290 99 46 chr5 115823656 115823808 -36713451 - RSINE1 SINE B4 -2 163 4 1 1468 432 0 0 0 chr5 115823892 115823940 -36713319 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1468 354 45 0 0 chr5 115823940 115823983 -36713276 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1468 229 216 0 0 chr5 115824646 115824697 -36712562 + T-rich Low_complexity Low_complexity 1 51 0 1 1468 827 195 0 26 chr5 115824815 115824968 -36712291 - B1F2 SINE Alu 0 149 1 1 1468 36 0 0 0 chr5 115825015 115825051 -36712208 + AT_rich Low_complexity Low_complexity 1 36 0 1 1468 1224 62 0 0 chr5 115825051 115825197 -36712062 - B1_Mus2 SINE Alu 0 147 2 1 1468 315 0 0 0 chr5 115825200 115825235 -36712024 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1 1468 685 193 8 8 chr5 115825352 115825472 -36711787 + B1_Mur1 SINE Alu 30 149 0 1 1468 245 51 26 0 chr5 115825538 115825577 -36711682 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1 1468 909 179 85 21 chr5 115825577 115825765 -36711494 - B3 SINE B2 -16 200 1 1 1468 911 292 95 29 chr5 115826081 115826427 -36710832 + MER68 LTR ERVL 97 465 -98 1 1468 342 85 365 0 chr5 115826502 115826606 -36710653 - B2_Mm2 SINE B2 -7 188 47 1 1468 1284 108 11 0 chr5 115826638 115826814 -36710445 - B2_Mm1t SINE B2 -14 179 2 1 1468 742 176 7 66 chr5 115826930 115827082 -36710177 + B1_Mur3 SINE Alu 2 144 -5 1 1468 857 74 190 0 chr5 115827110 115827231 -36710028 + B1_Mm SINE Alu 1 144 -3 1 1468 222 37 0 0 chr5 115827231 115827258 -36710001 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1468 793 84 169 0 chr5 115827275 115827417 -36709842 + B2_Mm2 SINE B2 27 192 -3 1 1468 328 202 253 35 chr5 115827427 115827514 -36709745 + B1_Mur1 SINE Alu 3 108 -41 1 1468 1110 95 0 0 chr5 115827712 115827860 -36709399 - B1_Mus1 SINE Alu 0 148 1 1 1468 373 203 81 50 chr5 115827935 115828096 -36709163 - RMER17C LTR ERVK -137 273 108 1 1468 308 167 365 19 chr5 115828096 115828200 -36709059 - B2_Mm1t SINE B2 -6 187 48 1 1468 1285 114 11 0 chr5 115828247 115828423 -36708836 - B2_Mm1t SINE B2 -14 179 2 1 1468 1576 52 5 0 chr5 115828434 115828626 -36708633 - B2_Mm1a SINE B2 0 193 1 1 1468 3199 51 8 8 chr5 115828694 115829090 -36708169 + MTA_Mm LTR MaLR 1 396 0 1 1468 1092 75 0 0 chr5 115829556 115829703 -36707556 + (TTTC)n Simple_repeat Simple_repeat 4 150 0 1 1468 1098 52 0 36 chr5 115829744 115829884 -36707375 + B1_Mus2 SINE Alu 1 135 -12 1 1468 270 0 43 43 chr5 115829885 115829932 -36707327 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1468 441 296 35 70 chr5 115829944 115830115 -36707144 + RSINE1 SINE B4 1 165 0 1 1468 611 218 83 5 chr5 115830482 115830612 -36706647 + B3A SINE B2 21 161 -34 1 1468 198 0 0 0 chr5 115830612 115830634 -36706625 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1468 362 230 139 103 chr5 115830634 115830668 -36706591 + B2_Mm2 SINE B2 162 191 -4 1 1468 1185 50 7 0 chr5 115830675 115830816 -36706443 + B1_Mus1 SINE Alu 1 142 -6 1 1468 704 150 0 8 chr5 115830825 115830953 -36706306 + GA-rich Low_complexity Low_complexity 4 130 0 1 1468 984 162 7 0 chr5 115831109 115831257 -36706002 + B1_Mur4 SINE Alu 2 150 0 1 1468 23 33 0 0 chr5 115831258 115831288 -36705971 + AT_rich Low_complexity Low_complexity 1 30 0 1 1468 486 49 0 0 chr5 115831293 115831354 -36705905 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1468 1127 60 0 0 chr5 115831590 115831723 -36705536 - B1_Mus1 SINE Alu -14 134 2 1 1468 826 171 192 6 chr5 115831817 115831999 -36705260 - B3 SINE B2 0 216 1 1 1468 564 288 0 23 chr5 115832015 115832143 -36705116 - ID_B1 SINE B4 -19 205 81 1 1468 1004 110 0 14 chr5 115832186 115832324 -36704935 - B1_Mus1 SINE Alu -9 139 4 1 1468 328 169 221 0 chr5 115832513 115832590 -36704669 + MIR SINE MIR 90 183 -85 1 1468 1894 224 98 34 chr5 115832631 115833154 -36704105 + Lx9 LINE L1 6960 7515 -129 1 1468 222 208 0 82 chr5 115833154 115833264 -36703995 + (TA)n Simple_repeat Simple_repeat 1 101 0 1 1468 180 176 45 45 chr5 115833273 115833362 -36703897 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 1 1468 595 184 87 55 chr5 115833364 115833455 -36703804 + Lx9 LINE L1 7419 7510 -134 1 1468 492 72 0 0 chr5 115833455 115833524 -36703735 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1468 595 184 87 55 chr5 115833524 115833651 -36703608 + Lx9 LINE L1 7511 7643 -1 1 1468 362 274 79 51 chr5 115833807 115833984 -36703275 - B3A SINE B2 0 198 17 1 1468 470 248 0 17 chr5 115834305 115834420 -36702839 - ID_B1 SINE B4 0 224 112 1 1468 519 279 7 49 chr5 115834630 115834773 -36702486 + ID_B1 SINE B4 80 216 -8 1 1468 262 293 3 6 chr5 115834804 115834894 -36702365 + B1_Mur1 SINE Alu 40 128 -21 1 1468 478 332 46 23 chr5 115835015 115835234 -36702025 - MIR SINE MIR -3 259 36 1 1468 450 219 62 0 chr5 115835407 115835503 -36701756 + B1_Mus1 SINE Alu 3 104 -44 1 1468 243 258 50 70 chr5 115835416 115835516 -36701743 + MT2B LTR ERVL 175 272 -329 1 1468 369 257 95 0 chr5 115835914 115836019 -36701240 - PB1D10 SINE Alu -2 115 1 1 1468 210 312 38 25 chr5 115836019 115836054 -36701205 - B4A SINE B4 -207 85 50 1 1468 21 36 0 0 chr5 115836196 115836224 -36701035 + AT_rich Low_complexity Low_complexity 1 28 0 1 1468 1205 41 0 0 chr5 115836224 115836370 -36700889 + B1_Mus2 SINE Alu 2 147 0 1 1468 1205 107 23 0 chr5 115836387 115836564 -36700695 - B2_Mm2 SINE B2 -14 181 1 1 1468 695 239 13 6 chr5 115836813 115836969 -36700290 + RSINE1 SINE B4 4 160 -5 1 1468 615 177 33 3 chr5 115836996 115837139 -36700120 + B3A SINE B2 40 184 -32 1 1468 259 201 43 105 chr5 115837211 115837312 -36699947 + RLTR11A2 LTR ERVK 105 208 -320 1 1468 631 262 19 19 chr5 115837284 115837485 -36699774 + RLTR15 LTR ERVK 138 338 -21 1 1468 459 0 0 0 chr5 115837485 115837536 -36699723 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1468 32 0 0 0 chr5 115837556 115837588 -36699671 + AT_rich Low_complexity Low_complexity 1 32 0 1 1468 283 220 0 0 chr5 115837594 115837644 -36699615 + PB1D9 SINE Alu 1 50 -70 1 1468 849 142 0 0 chr5 115837649 115837776 -36699483 + B1_Mus2 SINE Alu 1 127 -20 1 1468 486 108 0 0 chr5 115837967 115838041 -36699218 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 1 1468 1416 44 0 0 chr5 115838041 115838221 -36699038 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1468 1052 66 0 0 chr5 115838221 115838357 -36698902 - B1_Mus1 SINE Alu -12 136 1 1 1468 536 267 0 16 chr5 115838359 115838481 -36698778 - ID_B1 SINE B4 0 224 105 1 1468 369 0 0 0 chr5 115838493 115838534 -36698725 + (TCTG)n Simple_repeat Simple_repeat 2 42 0 1 1468 256 279 0 29 chr5 115838559 115838629 -36698630 - PB1 SINE Alu -58 69 2 1 1468 347 211 32 135 chr5 115838687 115838813 -36698446 + MT2B LTR ERVL 145 257 -344 1 1468 923 92 0 0 chr5 115838718 115838849 -36698410 + B1_Mur3 SINE Alu 10 140 -9 1 1468 269 198 0 11 chr5 115838859 115838951 -36698308 + GA-rich Low_complexity Low_complexity 2 92 0 1 1468 41 78 0 0 chr5 115839058 115839148 -36698111 + AT_rich Low_complexity Low_complexity 1 90 0 1 1468 212 250 16 48 chr5 115839883 115839946 -36697313 + ID4_ SINE ID 22 82 -1 1 1468 28 0 0 0 chr5 115839989 115840017 -36697242 + AT_rich Low_complexity Low_complexity 1 28 0 1 1468 989 108 0 20 chr5 115840125 115840276 -36696983 + B1_Mus1 SINE Alu 1 148 0 1 1468 378 61 0 0 chr5 115840428 115840477 -36696782 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1468 186 271 68 0 chr5 115840516 115840575 -36696684 + MIR SINE MIR 26 88 -174 1 1468 750 154 29 22 chr5 115840737 115840876 -36696383 - B1_Mur3 SINE Alu -1 148 9 1 1468 387 0 0 0 chr5 115840906 115840949 -36696310 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1468 517 252 45 0 chr5 115840960 115841071 -36696188 - RSINE1 SINE B4 -35 130 15 1 1468 867 194 119 0 chr5 115841185 115841386 -36695873 - URR1B DNA MER1_type 0 225 1 1 1468 1298 47 0 6 chr5 115841437 115841609 -36695650 + B2_Mm2 SINE B2 1 171 -24 1 1468 205 323 82 20 chr5 115841661 115841759 -36695500 - MIRb SINE MIR -157 111 8 1 1468 298 47 61 30 chr5 115841952 115842018 -36695241 + (TGGGGG)n Simple_repeat Simple_repeat 3 70 0 1 1468 890 148 0 0 chr5 115842525 115842667 -36694592 + B1_Mur2 SINE Alu 1 142 -7 1 1468 477 303 0 0 chr5 115842695 115842817 -36694442 + ID_B1 SINE B4 85 206 -18 1 1468 196 132 0 136 chr5 115843163 115843207 -36694052 - L2a LINE L2 -25 3401 3364 1 1468 210 255 21 0 chr5 115843174 115843221 -36694038 - MIRm SINE MIR -16 260 213 1 1468 298 317 182 9 chr5 115843224 115843419 -36693840 - MIRb SINE MIR -10 258 23 1 1468 195 146 0 0 chr5 115843441 115843482 -36693777 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 1 1468 227 273 17 52 chr5 115843788 115843904 -36693355 + MIRb SINE MIR 68 179 -89 1 1468 189 0 0 0 chr5 115844928 115844949 -36692310 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1468 278 268 14 0 chr5 115844957 115845028 -36692231 + B4A SINE B4 5 76 -216 1 1468 287 262 142 47 chr5 115845040 115845188 -36692071 + B4A SINE B4 125 286 -6 1 1468 1189 41 0 0 chr5 115845389 115845534 -36691725 + B1_Mus1 SINE Alu 1 145 -3 1 1468 578 168 9 0 chr5 115845540 115845653 -36691606 + GA-rich Low_complexity Low_complexity 3 116 0 1 1468 754 246 16 16 chr5 115845802 115845992 -36691267 + ID_B1 SINE B4 2 191 -33 1 1468 2886 56 23 3 chr5 115845992 115846384 -36690875 + MTB LTR MaLR 1 400 0 1 1468 224 361 0 0 chr5 115846406 115846489 -36690770 + MIR SINE MIR 20 102 -160 1 1468 274 40 80 0 chr5 115846489 115846539 -36690720 + (TCTG)n Simple_repeat Simple_repeat 2 55 0 1 1468 180 231 26 0 chr5 115846641 115846680 -36690579 - L2a LINE L2 -16 3359 3320 1 1468 548 306 56 30 chr5 115846791 115847057 -36690202 + L1ME2 LINE L1 5884 6156 -8 1 1468 26 30 0 0 chr5 115847219 115847252 -36690007 + AT_rich Low_complexity Low_complexity 1 33 0 1 1468 393 141 0 90 chr5 115847260 115847338 -36689921 - MTD LTR MaLR 0 419 349 1 1468 573 143 0 0 chr5 115847336 115847434 -36689825 - B1_Mur2 SINE Alu -51 98 1 1 1468 329 247 68 58 chr5 115847819 115847922 -36689337 + B1F SINE Alu 46 149 0 1 1468 180 0 0 0 chr5 115848363 115848383 -36688876 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 1 1468 317 306 103 29 chr5 115848764 115848939 -36688320 + MER53 DNA hAT 4 191 -2 1 1468 226 242 0 31 chr5 115849033 115849097 -36688162 + C-rich Low_complexity Low_complexity 4 65 0 1 1468 337 314 51 0 chr5 115849107 115849225 -36688034 - B1_Mus1 SINE Alu -24 124 1 1 1468 1040 104 47 57 chr5 115849530 115849723 -36687536 + B2_Mm2 SINE B2 2 192 -3 1 1468 1119 75 0 7 chr5 115849727 115849875 -36687384 - B1_Mm SINE Alu 0 147 1 1 1468 270 329 0 0 chr5 115849893 115849975 -36687284 - PB1D10 SINE Alu -13 104 23 1 1468 429 229 16 33 chr5 115850016 115850138 -36687121 - PB1D9 SINE Alu 0 120 1 1 1468 729 287 5 62 chr5 115850228 115850436 -36686823 - B3A SINE B2 -2 196 1 1 1468 415 172 79 20 chr5 115850816 115850917 -36686342 - PB1D9 SINE Alu -2 118 12 1 1468 321 208 158 60 chr5 115851372 115851404 -36685855 + B1F SINE Alu 1 117 -32 1 1468 347 179 0 116 chr5 115851404 115851499 -36685760 + ID_B1 SINE B4 132 215 -9 1 1468 483 296 7 7 chr5 115851650 115851796 -36685463 - RSINE1 SINE B4 -17 148 3 1 1468 299 289 42 42 chr5 115851851 115851970 -36685289 - MIR SINE MIR -79 183 65 1 1468 870 62 0 0 chr5 115852581 115852694 -36684565 + (TTTC)n Simple_repeat Simple_repeat 2 114 0 1 1468 406 268 163 27 chr5 115852707 115852891 -36684368 - ID_B1 SINE B4 -15 209 1 1 1468 731 124 41 0 chr5 115852980 115853101 -36684158 - B1_Mur2 SINE Alu -10 139 14 1 1468 367 125 41 148 chr5 115853005 115853127 -36684132 - MT2B LTR ERVL -337 264 156 1 1468 230 319 0 14 chr5 115853444 115853514 -36683745 + ID4 SINE ID 15 83 0 1 1468 403 224 0 0 chr5 115853554 115853630 -36683629 + PB1D10 SINE Alu 11 86 -31 1 1468 261 0 0 0 chr5 115854146 115854175 -36683084 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1468 204 40 0 0 chr5 115854336 115854361 -36682898 + (TCCCC)n Simple_repeat Simple_repeat 5 29 0 1 1468 720 163 0 23 chr5 115855017 115855149 -36682110 + B1_Mur1 SINE Alu 20 148 -1 1 1468 278 260 100 40 chr5 115855274 115855374 -36681885 + B3A SINE B2 57 162 -36 1 1468 335 294 79 73 chr5 115855662 115855827 -36681432 - L1MB5 LINE L1 -150 6024 5859 1 1468 312 352 24 0 chr5 115855935 115856044 -36681215 - L1M5 LINE L1 -2947 3199 3088 1 1468 1130 61 7 0 chr5 115856044 115856191 -36681068 - B1_Mus1 SINE Alu 0 148 1 1 1468 312 352 24 0 chr5 115856191 115856206 -36681053 - L1M5 LINE L1 -3059 3087 3073 1 1468 235 236 11 11 chr5 115856206 115856300 -36680959 + (TG)n Simple_repeat Simple_repeat 2 95 0 1 1468 444 220 0 0 chr5 115856343 115856461 -36680798 + (TG)n Simple_repeat Simple_repeat 1 118 0 1 1468 342 274 224 17 chr5 115856461 115856702 -36680557 - B4A SINE B4 0 292 2 1 1468 707 297 24 0 chr5 115856705 115856917 -36680342 - B4A SINE B4 -75 217 1 1 1468 793 156 7 7 chr5 115857146 115857288 -36679971 - B1_Mus1 SINE Alu -3 145 4 1 1468 308 164 0 15 chr5 115857358 115857426 -36679833 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1468 306 288 73 55 chr5 115857462 115857682 -36679577 - B4 SINE B4 -25 267 44 1 1468 637 194 8 37 chr5 115857721 115857855 -36679404 - ID_B1 SINE B4 -3 221 92 1 1468 232 363 56 19 chr5 115858342 115858558 -36678701 + MIRc SINE MIR 45 268 0 1 1468 630 198 159 15 chr5 115858688 115858883 -36678376 + ID_B1 SINE B4 1 223 -1 1 1468 1122 48 7 0 chr5 115859181 115859326 -36677933 + B1_Mus2 SINE Alu 1 146 -1 1 1468 458 234 0 101 chr5 115859429 115859542 -36677717 + URR1B DNA MER1_type 1 102 -123 1 1468 1284 72 39 6 chr5 115859542 115859723 -36677536 - B2_Mm2 SINE B2 -7 188 2 1 1468 633 298 23 27 chr5 115859728 115859944 -36677315 - B4A SINE B4 -62 230 11 1 1468 306 0 0 0 chr5 115859996 115860030 -36677229 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 1 1468 204 40 0 0 chr5 115860245 115860270 -36676989 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1468 275 0 29 0 chr5 115860442 115860477 -36676782 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1 1468 338 318 100 0 chr5 115860484 115860594 -36676665 - ID_B1 SINE B4 0 224 104 1 1468 1010 105 12 0 chr5 115861369 115861531 -36675728 + (TTTC)n Simple_repeat Simple_repeat 3 166 0 1 1468 924 166 13 58 chr5 115861562 115861786 -36675473 + B3 SINE B2 3 216 0 1 1468 558 223 7 48 chr5 115861793 115861939 -36675320 - B1_Mur1 SINE Alu -5 144 5 1 1468 458 262 271 5 chr5 115861976 115862183 -36675076 - B4A SINE B4 -2 290 29 1 1468 418 286 0 0 chr5 115862222 115862320 -36674939 + PB1D10 SINE Alu 11 108 -9 1 1468 321 26 0 0 chr5 115862425 115862463 -36674796 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1468 1387 59 43 0 chr5 115862706 115862892 -36674367 - B2_Mm2 SINE B2 0 195 2 1 1468 210 143 0 0 chr5 115862943 115862978 -36674281 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1468 598 283 42 12 chr5 115862994 115863230 -36674029 - L1ME2z LINE L1 -278 5896 5652 1 1468 395 323 7 44 chr5 115863512 115863648 -36673611 - ID_B1 SINE B4 -2 222 92 1 1468 1327 83 0 35 chr5 115863673 115863713 -36673546 - B2_Mm1a SINE B2 0 193 160 1 1468 180 0 0 0 chr5 115863713 115863733 -36673526 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1468 1327 83 0 35 chr5 115863733 115863892 -36673367 - B2_Mm1a SINE B2 -34 159 1 1 1468 477 216 92 92 chr5 115863925 115863961 -36673298 - RSINE1 SINE B4 0 165 136 1 1468 2110 104 3 63 chr5 115863961 115864311 -36672948 - ORR1A4 LTR MaLR 0 329 1 1 1468 477 216 92 92 chr5 115864311 115864413 -36672846 - RSINE1 SINE B4 -30 135 26 1 1468 1908 82 27 134 chr5 115864413 115864779 -36672480 - ORR1A2 LTR MaLR 0 327 1 1 1468 477 216 92 92 chr5 115864779 115864802 -36672457 - RSINE1 SINE B4 -140 25 3 1 1468 549 269 6 53 chr5 115864810 115864840 -36672419 + ID_B1 SINE B4 61 221 -3 1 1468 683 209 22 0 chr5 115864840 115864979 -36672280 + B1F SINE Alu 7 148 -1 1 1468 234 255 0 0 chr5 115865005 115865056 -36672203 + B4 SINE B4 21 71 -221 1 1468 257 217 0 0 chr5 115865012 115865058 -36672201 + ID4_ SINE ID 27 72 -11 1 1468 221 0 35 0 chr5 115865061 115865090 -36672169 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1468 288 260 210 8 chr5 115865353 115865477 -36671782 - MIRc SINE MIR -118 150 2 1 1468 183 80 0 0 chr5 115865851 115865876 -36671383 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1468 222 294 0 41 chr5 115866074 115866155 -36671104 + MIRc SINE MIR 80 160 -116 1 1468 473 309 0 7 chr5 115866208 115866345 -36670914 + RSINE1 SINE B4 30 165 0 1 1468 269 197 14 0 chr5 115866632 115866703 -36670556 + GA-rich Low_complexity Low_complexity 1 72 0 1 1468 192 152 0 0 chr5 115866766 115866799 -36670460 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1468 815 79 0 0 chr5 115866836 115866950 -36670309 - B1_Mus1 SINE Alu -6 142 29 1 1468 236 333 14 79 chr5 115866978 115867247 -36670012 + RMER12 LTR ERVK 770 1021 -301 1 1468 414 0 0 0 chr5 115867247 115867293 -36669966 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 183 2385 250 58 16 chr5 115867301 115867919 -36669340 - Lx8 LINE L1 -529 6944 6301 1 1469 314 109 0 35 chr5 115867975 115868032 -36669227 + (TATG)n Simple_repeat Simple_repeat 4 58 0 1 1469 189 0 0 0 chr5 115868064 115868085 -36669174 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1469 748 199 0 7 chr5 115868305 115868442 -36668817 + B1_Mur4 SINE Alu 2 137 -13 1 1469 438 69 0 0 chr5 115868445 115868503 -36668756 + (TGAA)n Simple_repeat Simple_repeat 4 61 0 1 1469 1146 270 96 0 chr5 115868546 115868909 -36668350 + Lx8 LINE L1 6829 7226 -247 1 1469 454 139 23 0 chr5 115868917 115869003 -36668256 - URR1B DNA MER1_type 0 225 138 1 1469 902 108 0 63 chr5 115869180 115869338 -36667921 + B1_Mur4 SINE Alu 3 150 0 1 1469 408 176 0 29 chr5 115869341 115869446 -36667813 + GA-rich Low_complexity Low_complexity 1 102 0 1 1469 407 76 327 45 chr5 115869481 115869591 -36667668 - B2_Mm2 SINE B2 -7 188 48 1 1469 661 213 35 7 chr5 115869756 115869898 -36667361 + URR1B DNA MER1_type 80 225 0 1 1469 508 275 8 0 chr5 115870036 115870156 -36667103 - ID_B1 SINE B4 -52 172 52 1 1469 282 274 14 0 chr5 115870191 115870264 -36666995 - ID_B1 SINE B4 -67 157 84 1 1469 243 0 0 0 chr5 115870280 115870307 -36666952 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1469 1105 64 0 0 chr5 115870309 115870450 -36666809 - B1_Mm SINE Alu -6 141 1 1 1469 377 301 29 0 chr5 115870742 115870845 -36666414 - PB1D7 SINE Alu -6 114 9 1 1469 248 265 110 29 chr5 115871273 115871409 -36665850 - L1MB8 LINE L1 0 6178 6032 1 1469 269 307 78 16 chr5 115871412 115871524 -36665735 + ID_B1 SINE B4 79 196 -28 1 1469 246 269 115 76 chr5 115871524 115871681 -36665578 + RSINE1 SINE B4 3 165 0 1 1469 269 307 78 16 chr5 115871681 115871697 -36665562 + ID_B1 SINE B4 197 215 -9 1 1469 263 68 0 83 chr5 115871707 115871755 -36665504 + ID_B1 SINE B4 180 223 -1 1 1469 416 182 0 33 chr5 115871760 115871851 -36665408 + PB1D9 SINE Alu 32 119 -1 1 1469 397 250 115 0 chr5 115871864 115871968 -36665291 + B1F2 SINE Alu 12 127 -22 1 1469 337 309 27 0 chr5 115872035 115872145 -36665114 - PB1D7 SINE Alu -6 114 2 1 1469 384 22 0 0 chr5 115872264 115872309 -36664950 + (TGGA)n Simple_repeat Simple_repeat 4 48 0 1 1469 538 237 26 0 chr5 115872330 115872444 -36664815 - RSINE1 SINE B4 -46 119 3 1 1469 265 303 26 0 chr5 115872449 115872525 -36664734 - BC1_Mm scRNA scRNA -60 92 15 1 1469 257 197 14 0 chr5 115873207 115873278 -36663981 + CT-rich Low_complexity Low_complexity 2 73 0 1 1469 844 182 0 20 chr5 115873281 115873432 -36663827 - B1_Mur3 SINE Alu 0 149 2 1 1469 341 250 233 26 chr5 115873440 115873629 -36663630 - B4A SINE B4 -64 228 1 1 1469 648 156 105 38 chr5 115873700 115873833 -36663426 + B1_Mus1 SINE Alu 2 143 -5 1 1469 394 278 83 0 chr5 115873948 115874081 -36663178 - L1M4 LINE L1 -1094 5052 4909 1 1469 1011 58 0 14 chr5 115874085 115874225 -36663034 - B1_Mus2 SINE Alu 0 147 10 1 1469 559 250 48 169 chr5 115874297 115874330 -36662929 - B3A SINE B2 0 198 170 1 1469 1191 48 0 0 chr5 115874330 115874477 -36662782 - B1_Mus2 SINE Alu 0 147 1 1 1469 559 275 41 31 chr5 115874477 115874494 -36662765 - B3A SINE B2 -12 186 171 1 1469 318 87 0 0 chr5 115874494 115874540 -36662719 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1469 559 275 41 31 chr5 115874540 115874704 -36662555 - B3A SINE B2 -28 170 2 1 1469 517 263 130 56 chr5 115875176 115875335 -36661924 + L1MC1 LINE L1 5652 5821 -512 1 1469 484 205 62 16 chr5 115875335 115875464 -36661795 + B1_Mur1 SINE Alu 2 136 -13 1 1469 517 263 130 56 chr5 115875464 115875485 -36661774 + L1MC1 LINE L1 5822 5841 -492 1 1469 453 90 0 0 chr5 115875485 115875552 -36661707 + (TGGA)n Simple_repeat Simple_repeat 2 68 0 1 1469 517 263 130 56 chr5 115875552 115875692 -36661567 + L1MC1 LINE L1 5842 5997 -336 1 1469 1136 41 0 58 chr5 115876209 115876365 -36660894 + B1_Mm SINE Alu 1 147 0 1 1469 745 204 7 13 chr5 115876414 115876563 -36660696 + B1_Mur3 SINE Alu 2 149 0 1 1469 307 376 21 50 chr5 115876669 115876809 -36660450 + RSINE1 SINE B4 25 160 -5 1 1469 430 244 0 0 chr5 115876842 115876932 -36660327 + PB1D10 SINE Alu 1 90 -27 1 1469 369 0 0 0 chr5 115877810 115877851 -36659408 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1469 455 0 0 18 chr5 115877851 115877906 -36659353 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1469 32 26 0 0 chr5 115879497 115879536 -36657723 + GC_rich Low_complexity Low_complexity 1 39 0 1 1469 257 89 22 0 chr5 115879700 115879745 -36657514 + (CCG)n Simple_repeat Simple_repeat 2 47 0 1 1469 235 130 18 18 chr5 115879818 115879873 -36657386 + (CCCGG)n Simple_repeat Simple_repeat 4 58 0 1 1469 24 53 0 0 chr5 115879891 115879929 -36657330 + GC_rich Low_complexity Low_complexity 1 38 0 1 1469 31 76 0 0 chr5 115880486 115880552 -36656707 + GC_rich Low_complexity Low_complexity 1 66 0 1 1469 205 156 0 0 chr5 115881327 115881359 -36655900 + C-rich Low_complexity Low_complexity 3 34 0 1 1469 239 0 32 0 chr5 115882318 115882349 -36654910 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1469 351 243 69 43 chr5 115882937 115883053 -36654206 - MIRc SINE MIR -39 229 111 1 1469 268 331 43 49 chr5 115883446 115883608 -36653651 - MIRb SINE MIR -28 240 80 1 1469 369 0 0 0 chr5 115883610 115883651 -36653608 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1469 432 0 0 0 chr5 115883651 115883698 -36653561 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1469 216 0 0 0 chr5 115884728 115884752 -36652507 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1469 233 335 66 87 chr5 115887436 115887619 -36649640 - MIRb SINE MIR -8 260 82 1 1469 182 37 37 0 chr5 115887944 115887971 -36649288 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 1 1469 185 94 31 0 chr5 115888135 115888167 -36649092 + (CCCCCT)n Simple_repeat Simple_repeat 2 34 0 1 1469 341 253 180 19 chr5 115888384 115888545 -36648714 + MIRb SINE MIR 67 253 -15 1 1469 450 0 0 0 chr5 115888615 115888665 -36648594 + (GTTTG)n Simple_repeat Simple_repeat 2 51 0 1 1469 722 177 0 33 chr5 115889902 115890054 -36647205 + B1_Mus1 SINE Alu 2 148 0 1 1469 512 202 205 18 chr5 115890056 115890227 -36647032 - B3 SINE B2 -4 212 10 1 1469 189 0 0 0 chr5 115890229 115890250 -36647009 + (CCCCAG)n Simple_repeat Simple_repeat 3 23 0 1 1469 302 241 12 0 chr5 115890259 115890349 -36646910 + MIR SINE MIR 72 165 -111 1 1469 557 131 47 0 chr5 115890813 115890920 -36646339 + B1_Mus1 SINE Alu 37 148 0 1 1469 189 171 0 0 chr5 115890922 115890957 -36646302 + GA-rich Low_complexity Low_complexity 2 36 0 1 1469 236 304 28 38 chr5 115890993 115891099 -36646160 + MT2B LTR ERVL 152 256 -345 1 1469 590 241 60 8 chr5 115891012 115891146 -36646113 + B1F2 SINE Alu 9 149 0 1 1469 183 233 200 0 chr5 115891219 115891279 -36645980 + MIR SINE MIR 185 256 -6 1 1469 692 216 7 7 chr5 115892233 115892368 -36644891 + B3 SINE B2 1 135 -81 1 1469 23 0 0 0 chr5 115892388 115892411 -36644848 + AT_rich Low_complexity Low_complexity 1 23 0 1 1469 397 89 0 0 chr5 115892415 115892471 -36644788 + B2_Mm2 SINE B2 1 56 -139 1 1469 198 174 0 0 chr5 115892471 115892517 -36644742 + T-rich Low_complexity Low_complexity 1 46 0 1 1469 837 59 0 33 chr5 115892517 115892639 -36644620 - B1_Mus1 SINE Alu 0 148 31 1 1469 1015 83 0 46 chr5 115892647 115892799 -36644460 - B1_Mus1 SINE Alu -1 147 3 1 1469 577 102 32 41 chr5 115892804 115892931 -36644328 + B2_Mm2 SINE B2 42 179 -14 1 1469 839 53 9 0 chr5 115892962 115893075 -36644184 - B1_Mus1 SINE Alu 0 148 35 1 1469 254 203 80 13 chr5 115893019 115893094 -36644165 - 4.5SRNA scRNA scRNA -8 86 7 1 1469 584 183 23 12 chr5 115893199 115893370 -36643889 + (CATA)n Simple_repeat Simple_repeat 4 176 0 1 1469 364 290 102 21 chr5 115893401 115893588 -36643671 + B3 SINE B2 3 204 -12 1 1469 546 170 38 0 chr5 115893761 115893867 -36643392 - B1_Mur3 SINE Alu 0 149 40 1 1469 235 185 0 100 chr5 115893815 115893875 -36643384 - 4.5SRNA scRNA scRNA -8 86 33 1 1469 216 0 0 0 chr5 115894031 115894055 -36643204 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 1 1469 618 182 116 0 chr5 115894055 115894176 -36643083 - B1_Mur2 SINE Alu -14 135 1 1 1469 379 147 39 26 chr5 115894184 115894261 -36642998 - ID_B1 SINE B4 -1 223 146 1 1469 310 285 181 31 chr5 115894492 115894746 -36642513 + B4A SINE B4 1 292 0 1 1469 304 194 0 15 chr5 115896189 115896257 -36641002 - ID4_ SINE ID -15 68 2 1 1469 720 272 27 0 chr5 115896459 115896604 -36640655 + B3 SINE B2 22 171 -45 1 1469 380 71 18 0 chr5 115896604 115896660 -36640599 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1469 720 272 27 0 chr5 115896660 115896698 -36640561 + B3 SINE B2 172 209 -7 1 1469 238 303 0 120 chr5 115896734 115896809 -36640450 + ID4_ SINE ID 9 74 -9 1 1469 240 59 0 0 chr5 115896915 115896949 -36640310 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1469 276 262 25 0 chr5 115897376 115897456 -36639803 - L2b LINE L2 -6 3369 3288 1 1469 339 25 0 0 chr5 115897929 115897969 -36639290 + (GGGGA)n Simple_repeat Simple_repeat 4 43 0 1 1469 430 269 133 85 chr5 115898790 115898877 -36638382 + ID_B1 SINE B4 4 222 0 1 1469 452 267 8 49 chr5 115898877 115898999 -36638260 + PB1D10 SINE Alu 1 117 0 1 1469 1028 86 0 7 chr5 115899091 115899231 -36638028 + B1_Mus2 SINE Alu 1 139 -8 1 1469 188 0 74 0 chr5 115899231 115899258 -36638001 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1469 2017 151 73 44 chr5 115899499 115899915 -36637344 + Lx4A LINE L1 6664 7057 -1 1 1469 380 202 101 50 chr5 115901712 115901811 -36635448 + PB1D9 SINE Alu 1 104 -16 1 1469 408 269 89 13 chr5 115901811 115901969 -36635290 + B4A SINE B4 7 176 -116 1 1469 392 285 27 4 chr5 115902112 115902237 -36635022 + B1F SINE Alu 19 142 -7 1 1469 261 139 0 0 chr5 115902257 115902300 -36634959 + (TGG)n Simple_repeat Simple_repeat 2 44 0 1 1469 899 121 7 0 chr5 115902302 115902443 -36634816 + B1_Mur4 SINE Alu 9 150 0 1 1469 469 265 36 29 chr5 115902695 115902835 -36634424 - B3 SINE B2 -26 190 50 1 1469 344 196 0 108 chr5 115902783 115902903 -36634356 + B1_Mur3 SINE Alu 41 147 -2 1 1469 185 154 26 0 chr5 115902903 115902942 -36634317 + GA-rich Low_complexity Low_complexity 1 40 0 1 1469 307 287 10 16 chr5 115903008 115903114 -36634145 + PB1D7 SINE Alu 14 117 0 1 1469 403 204 117 123 chr5 115903125 115903304 -36633955 + B3A SINE B2 5 182 -16 1 1469 1304 62 28 0 chr5 115903464 115903641 -36633618 + B2_Mm2 SINE B2 1 182 -13 1 1469 207 281 0 0 chr5 115904218 115904282 -36632977 + T-rich Low_complexity Low_complexity 1 64 0 1 1469 222 97 15 61 chr5 115905302 115905368 -36631891 + T-rich Low_complexity Low_complexity 2 64 0 1 1469 340 219 105 0 chr5 115905783 115905888 -36631371 + PB1D9 SINE Alu 2 117 -3 1 1469 354 259 87 26 chr5 115905894 115906009 -36631250 + B1F1 SINE Alu 1 123 -26 1 1469 378 304 18 18 chr5 115906062 115906176 -36631083 + PB1D9 SINE Alu 5 118 -2 1 1469 265 241 56 22 chr5 115906322 115906411 -36630848 + RSINE1 SINE B4 19 110 -55 1 1469 771 92 76 0 chr5 115906415 115906534 -36630725 - B2_Mm2 SINE B2 -67 128 1 1 1469 585 73 3 16 chr5 115906746 115906844 -36630415 + B1_Mm SINE Alu 18 137 -10 1 1469 412 287 43 14 chr5 115907181 115907319 -36629940 + B3A SINE B2 57 198 0 1 1469 315 315 19 89 chr5 115907348 115907505 -36629754 + B4A SINE B4 1 146 -146 1 1469 457 217 8 8 chr5 115907583 115907713 -36629546 + CT-rich Low_complexity Low_complexity 4 133 0 1 1469 300 27 0 0 chr5 115907723 115907760 -36629499 + (TCTCTG)n Simple_repeat Simple_repeat 3 39 0 1 1469 403 361 0 27 chr5 115907838 115907978 -36629281 + ID_B1 SINE B4 79 215 -9 1 1469 243 0 0 0 chr5 115907978 115908005 -36629254 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1469 333 270 71 18 chr5 115908191 115908304 -36628955 - PB1 SINE Alu 0 127 9 1 1469 264 294 92 75 chr5 115908361 115908534 -36628725 - B4A SINE B4 0 292 117 1 1469 627 205 251 23 chr5 115908651 115908826 -36628433 - B3 SINE B2 -1 215 1 1 1469 244 235 72 14 chr5 115908936 115909005 -36628254 + MIRc SINE MIR 84 156 -112 1 1469 207 0 0 0 chr5 115909491 115909514 -36627745 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1469 419 207 11 0 chr5 115909974 115910061 -36627198 - PB1D10 SINE Alu -25 92 5 1 1469 254 311 33 11 chr5 115909980 115910071 -36627188 - B4 SINE B4 -119 173 81 1 1469 310 266 7 7 chr5 115910077 115910217 -36627042 + (TG)n Simple_repeat Simple_repeat 1 140 0 1 1469 195 204 0 0 chr5 115910267 115910311 -36626948 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1469 246 236 18 0 chr5 115910347 115910402 -36626857 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1469 333 229 14 0 chr5 115910407 115910477 -36626782 - ID4_ SINE ID -11 72 2 1 1469 626 100 0 0 chr5 115910892 115910982 -36626277 + B2_Mm2 SINE B2 59 148 -47 1 1469 1221 125 0 5 chr5 115911013 115911206 -36626053 + B2_Mm2 SINE B2 2 193 -2 1 1469 324 256 167 40 chr5 115911262 115911388 -36625871 + B3A SINE B2 1 142 -56 1 1469 877 65 0 31 chr5 115911442 115911570 -36625689 + ORR1A1 LTR MaLR 223 346 0 1 1469 348 330 112 39 chr5 115911793 115911998 -36625261 + RMER15 LTR ERVL 339 558 -17 1 1469 189 0 0 0 chr5 115912075 115912096 -36625163 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1469 261 0 0 0 chr5 115912096 115912124 -36625135 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1469 27 29 0 0 chr5 115912216 115912250 -36625009 + AT_rich Low_complexity Low_complexity 1 34 0 1 1469 1126 28 0 40 chr5 115912250 115912401 -36624858 + B1_Mm SINE Alu 2 146 -1 1 1469 1082 80 67 6 chr5 115912412 115912576 -36624683 - B2_Mm2 SINE B2 -14 181 8 1 1469 656 145 8 8 chr5 115912568 115912686 -36624573 - B1_Mus1 SINE Alu -19 129 12 1 1469 1099 184 24 0 chr5 115912712 115912918 -36624341 - B3 SINE B2 -3 213 3 1 1469 1316 179 137 129 chr5 115913061 115913471 -36623788 + RMER19B LTR ERVK 2 414 -488 1 1469 1101 68 86 48 chr5 115913474 115913629 -36623630 + B2_Mm1t SINE B2 1 157 -36 1 1469 297 0 0 0 chr5 115913629 115913662 -36623597 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 1 1469 1101 68 86 48 chr5 115913662 115913692 -36623567 + B2_Mm1t SINE B2 158 193 0 1 1469 1126 75 0 0 chr5 115913693 115913840 -36623419 + B1_Mus2 SINE Alu 1 147 0 1 1469 707 145 105 29 chr5 115913876 115914047 -36623212 + B2_Mm2 SINE B2 5 188 -7 1 1469 893 69 0 58 chr5 115914129 115914267 -36622992 + B1_Mus1 SINE Alu 19 148 0 1 1469 189 0 0 0 chr5 115914267 115914288 -36622971 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1469 377 251 57 51 chr5 115914432 115914588 -36622671 + MIRb SINE MIR 5 159 -103 1 1469 438 202 178 0 chr5 115914773 115914902 -36622357 + B3A SINE B2 23 174 -24 1 1469 1784 162 188 21 chr5 115914943 115915373 -36621886 + RLTR11A LTR ERVK 1 502 -26 1 1469 965 113 65 6 chr5 115915377 115915546 -36621713 + B2_Mm1t SINE B2 1 179 -14 1 1469 348 105 310 26 chr5 115915578 115915694 -36621565 + B2_Mm2 SINE B2 47 195 0 1 1469 619 162 90 62 chr5 115915736 115915881 -36621378 + B2_Mm2 SINE B2 38 186 -9 1 1469 445 156 39 0 chr5 115915908 115915985 -36621274 + ID_B1 SINE B4 143 222 -2 1 1469 385 155 0 134 chr5 115916675 115916772 -36620487 + MT2B LTR ERVL 174 257 -344 1 1469 781 143 0 0 chr5 115916686 115916805 -36620454 + B1_Mur3 SINE Alu 19 137 -12 1 1469 244 86 0 0 chr5 115916820 115916855 -36620404 - B1_Mm SINE Alu -13 134 100 1 1469 180 0 0 0 chr5 115916855 115916875 -36620384 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1469 711 267 35 20 chr5 115916877 115917076 -36620183 - B3 SINE B2 -12 204 3 1 1469 1117 48 0 45 chr5 115917256 115917410 -36619849 - B1_Mm SINE Alu 0 147 1 1 1469 364 283 0 0 chr5 115917830 115917929 -36619330 + PB1D10 SINE Alu 1 99 -18 1 1469 454 264 9 9 chr5 115917933 115918040 -36619219 + PB1D7 SINE Alu 9 115 -5 1 1469 667 191 36 29 chr5 115918063 115918203 -36619056 + B1_Mur1 SINE Alu 9 149 0 1 1469 265 188 0 0 chr5 115918414 115918462 -36618797 - L2a LINE L2 -2 3424 3377 1 1469 529 164 42 7 chr5 115918502 115918793 -36618466 + (CA)n Simple_repeat Simple_repeat 1 301 0 1 1469 660 260 34 123 chr5 115918886 115919154 -36618105 + B4A SINE B4 49 292 0 1 1469 1576 21 21 0 chr5 115919339 115919528 -36617731 + B2_Mm1a SINE B2 1 193 0 1 1469 1150 61 0 0 chr5 115919551 115919698 -36617561 + B1_Mus2 SINE Alu 1 147 0 1 1469 189 0 0 0 chr5 115919698 115919719 -36617540 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1469 513 47 0 0 chr5 115919747 115919811 -36617448 + (GA)n Simple_repeat Simple_repeat 2 65 0 1 1469 275 257 27 67 chr5 115920290 115920365 -36616894 + ID_B1 SINE B4 143 214 -10 1 1469 546 96 36 0 chr5 115920434 115920506 -36616753 + B1_Mus1 SINE Alu 3 77 -71 1 1469 271 262 0 24 chr5 115920506 115920588 -36616671 + B1F1 SINE Alu 1 80 -69 1 1469 243 0 0 0 chr5 115921106 115921133 -36616126 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1469 458 196 38 29 chr5 115921136 115921241 -36616018 - PB1D9 SINE Alu -13 107 2 1 1469 314 208 18 73 chr5 115921446 115921555 -36615704 + RLTR25B LTR ERVK 419 521 -507 1 1469 767 84 0 0 chr5 115921470 115921577 -36615682 + B1_Mus2 SINE Alu 41 147 0 1 1469 529 119 48 0 chr5 115921601 115921685 -36615574 - PB1D9 SINE Alu -6 114 27 1 1469 637 87 0 0 chr5 115921683 115921775 -36615484 - BC1_Mm scRNA scRNA -59 93 2 1 1469 526 200 19 0 chr5 115922284 115922389 -36614870 - RSINE1 SINE B4 -51 114 8 1 1469 568 216 88 0 chr5 115922543 115922668 -36614591 + ID_B1 SINE B4 2 137 -87 1 1469 410 114 13 0 chr5 115922696 115922775 -36614484 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 1469 972 79 0 7 chr5 115922780 115922921 -36614338 - B2_Mm2 SINE B2 -54 141 2 1 1469 1151 235 120 16 chr5 115922989 115923356 -36613903 - RLTR12B LTR ERVK -16 512 108 1 1469 323 60 60 0 chr5 115923341 115923391 -36613868 - B2_Mm1t SINE B2 -35 158 106 1 1469 919 93 20 1 chr5 115923385 115923548 -36613711 - B2_Mm2 SINE B2 -16 177 1 1 1469 612 198 58 0 chr5 115923548 115923668 -36613591 - RLTR12B LTR ERVK -434 134 8 1 1469 984 110 14 0 chr5 115923741 115923887 -36613372 - B1_Mur3 SINE Alu 0 149 2 1 1469 383 320 101 13 chr5 115923915 115924143 -36613116 - B4A SINE B4 -30 262 15 1 1469 1381 69 16 0 chr5 115924158 115924346 -36612913 - B2_Mm2 SINE B2 -1 194 4 1 1469 363 301 81 14 chr5 115924846 115924864 -36612395 + B4 SINE B4 67 139 -153 1 1469 669 162 0 9 chr5 115924864 115924976 -36612283 + B1_Mur4 SINE Alu 3 113 -37 1 1469 363 301 81 14 chr5 115924976 115924994 -36612265 + B4 SINE B4 140 224 -68 1 1469 272 151 170 0 chr5 115925298 115925351 -36611908 - B1F1 SINE Alu -6 143 82 1 1469 804 250 15 15 chr5 115925643 115925842 -36611417 + ID_B1 SINE B4 7 205 -19 1 1469 345 75 0 0 chr5 115926027 115926080 -36611179 + (TC)n Simple_repeat Simple_repeat 1 53 0 1 1469 396 167 14 0 chr5 115926352 115926424 -36610835 - B3 SINE B2 -129 87 15 1 1469 1064 254 149 0 chr5 115926427 115926770 -36610489 + MTD LTR MaLR 25 418 -1 1 1469 351 150 0 0 chr5 115926808 115926868 -36610391 + (T)n Simple_repeat Simple_repeat 1 60 0 1 1469 266 282 14 0 chr5 115926868 115926939 -36610320 - ID4_ SINE ID 0 83 12 1 1469 186 50 75 0 chr5 115927001 115927041 -36610218 + (TA)n Simple_repeat Simple_repeat 2 44 0 1 1469 914 105 48 20 chr5 115927183 115927329 -36609930 - B1_Mur4 SINE Alu 0 150 1 1 1469 833 165 36 36 chr5 115927369 115927564 -36609695 + B2_Mm2 SINE B2 1 195 0 1 1469 242 179 0 0 chr5 115927575 115927611 -36609648 + MT2B LTR ERVL 175 210 -391 1 1469 311 186 121 6 chr5 115927611 115927692 -36609567 + B2_Mm2 SINE B2 3 89 -127 1 1469 26 0 0 67 chr5 115928024 115928069 -36609190 + AT_rich Low_complexity Low_complexity 1 42 0 1 1469 294 167 52 65 chr5 115928437 115928514 -36608745 + MT2B LTR ERVL 189 264 -337 1 1469 765 30 0 0 chr5 115928449 115928549 -36608710 + B1_Mus2 SINE Alu 48 147 0 1 1469 544 116 21 0 chr5 115928549 115928644 -36608615 + (GAGAA)n Simple_repeat Simple_repeat 4 100 0 1 1469 595 49 284 0 chr5 115928682 115928784 -36608475 + B2_Mm2 SINE B2 3 133 -62 1 1469 1585 21 21 0 chr5 115928894 115929083 -36608176 + B2_Mm1t SINE B2 1 193 0 1 1469 217 33 0 0 chr5 115929097 115929127 -36608132 + B3 SINE B2 1 30 -186 1 1469 877 118 7 0 chr5 115929121 115929256 -36608003 - B2_Mm1t SINE B2 -57 136 1 1 1469 32 26 0 0 chr5 115929340 115929379 -36607880 + AT_rich Low_complexity Low_complexity 1 39 0 1 1469 225 322 41 65 chr5 115929454 115929577 -36607682 - PB1D7 SINE Alu 0 120 1 1 1469 1027 83 107 13 chr5 115929937 115930096 -36607163 + B2_Mm2 SINE B2 3 176 -19 1 1469 786 170 164 65 chr5 115930705 115930770 -36606489 + URR1B DNA MER1_type 5 82 -143 1 1469 1230 75 32 16 chr5 115930770 115930959 -36606300 + B2_Mm2 SINE B2 2 193 -2 1 1469 786 170 164 65 chr5 115930959 115931094 -36606165 + URR1B DNA MER1_type 83 225 0 1 1469 604 234 14 7 chr5 115931243 115931389 -36605870 + ID_B1 SINE B4 3 149 -75 1 1469 1055 75 7 0 chr5 115931403 115931550 -36605709 + B1_Mus1 SINE Alu 1 148 0 1 1469 258 105 0 0 chr5 115931550 115931588 -36605671 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1469 526 240 110 0 chr5 115931594 115931740 -36605519 + B4A SINE B4 9 170 -122 1 1469 356 211 0 0 chr5 115931816 115931892 -36605367 + ID_B1 SINE B4 145 220 -4 1 1469 706 174 15 0 chr5 115931906 115932038 -36605221 + B1_Mur4 SINE Alu 7 140 -10 1 1469 198 0 0 0 chr5 115932038 115932060 -36605199 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1469 597 94 0 0 chr5 115932119 115932204 -36605055 + (GGA)n Simple_repeat Simple_repeat 2 86 0 1 1469 619 251 83 12 chr5 115933275 115933444 -36603815 + B3 SINE B2 36 216 0 1 1469 27 0 0 0 chr5 115933444 115933471 -36603788 + AT_rich Low_complexity Low_complexity 1 27 0 1 1469 732 180 27 48 chr5 115933476 115933663 -36603596 - B2_Mm2 SINE B2 -11 184 2 1 1469 213 39 0 0 chr5 115933799 115933825 -36603434 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1 1469 388 229 56 19 chr5 115934600 115934707 -36602552 - PB1D9 SINE Alu 0 120 10 1 1469 379 279 9 9 chr5 115934800 115934905 -36602354 + PB1D10 SINE Alu 10 114 -3 1 1469 563 211 93 142 chr5 115935021 115935204 -36602055 - B3 SINE B2 0 216 37 1 1469 989 79 43 0 chr5 115935204 115935344 -36601915 - B1_Mus1 SINE Alu 0 148 3 1 1469 563 211 93 142 chr5 115935344 115935386 -36601873 - B3 SINE B2 -180 36 2 1 1469 21 58 0 19 chr5 115935468 115935487 -36601772 + AT_rich Low_complexity Low_complexity 1 19 0 1 1469 1129 55 0 0 chr5 115935487 115935632 -36601627 - B1_Mus2 SINE Alu 0 147 3 1 1469 21 58 0 19 chr5 115935632 115935665 -36601594 + AT_rich Low_complexity Low_complexity 1 33 0 1 1469 675 197 0 47 chr5 115935677 115935826 -36601433 - B1_Mur1 SINE Alu 0 149 8 1 1469 326 269 111 111 chr5 115936068 115936357 -36600902 + B4A SINE B4 4 292 0 1 1469 384 162 38 0 chr5 115936517 115936597 -36600662 - ID_B1 SINE B4 0 224 142 1 1469 241 215 88 88 chr5 115936597 115936618 -36600641 - PB1D7 SINE Alu -1 118 18 1 1469 267 31 0 0 chr5 115936649 115936681 -36600578 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1 1469 220 208 101 25 chr5 115936770 115936849 -36600410 - B1_Mur4 SINE Alu -2 148 64 1 1469 189 132 0 0 chr5 115937153 115937191 -36600068 + (C)n Simple_repeat Simple_repeat 1 38 0 1 1469 805 118 146 18 chr5 115937348 115937512 -36599747 + B2_Mm2 SINE B2 1 185 -10 1 1469 372 327 60 7 chr5 115937600 115937751 -36599508 - RSINE1 SINE B4 -1 164 6 1 1469 230 131 0 32 chr5 115937833 115937896 -36599363 + (TTTG)n Simple_repeat Simple_repeat 4 64 0 1 1469 1065 54 0 69 chr5 115937896 115938055 -36599204 - B1_Mus1 SINE Alu 0 148 1 1 1469 1263 91 27 0 chr5 115938124 115938310 -36598949 + B2_Mm2 SINE B2 2 192 -3 1 1469 397 265 68 80 chr5 115938488 115938543 -36598716 + ID_B1 SINE B4 50 223 -1 1 1469 603 160 66 16 chr5 115938543 115938664 -36598595 + B1_Mur3 SINE Alu 22 148 -1 1 1469 395 179 13 0 chr5 115938681 115938759 -36598500 + L1M3 LINE L1 5595 5673 -507 1 1469 522 146 182 0 chr5 115938759 115938869 -36598390 + RSINE1 SINE B4 3 132 -33 1 1469 1294 0 0 0 chr5 115939467 115939611 -36597648 + U4 snRNA snRNA 1 144 -1 1 1469 274 191 38 47 chr5 115939817 115939919 -36597340 - PB1D7 SINE Alu -19 101 4 1 1469 1256 14 0 0 chr5 115940262 115940406 -36596853 + U4 snRNA snRNA 1 144 -1 1 1469 324 161 189 84 chr5 115940753 115940848 -36596411 - PB1D9 SINE Alu -5 115 11 1 1469 267 250 53 0 chr5 115940798 115940874 -36596385 - B4 SINE B4 -146 146 67 1 1469 447 299 48 7 chr5 115940894 115941039 -36596220 + RSINE1 SINE B4 6 156 -9 1 1469 381 43 0 0 chr5 115941039 115941086 -36596173 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1469 348 235 0 0 chr5 115941089 115941157 -36596102 + ID4 SINE ID 2 69 -14 1 1469 268 294 138 31 chr5 115941199 115941215 -36596044 + ID_B1 SINE B4 75 218 -6 1 1469 488 184 175 0 chr5 115941215 115941329 -36595930 + B1_Mur2 SINE Alu 10 143 -6 1 1469 1305 83 0 30 chr5 115941338 115941536 -36595723 + B2_Mm2 SINE B2 2 193 -2 1 1469 22 0 0 0 chr5 115941659 115941681 -36595578 + AT_rich Low_complexity Low_complexity 1 22 0 1 1469 988 45 75 0 chr5 115942676 115942810 -36594449 - B1_Mus1 SINE Alu -2 146 3 1 1469 531 0 0 0 chr5 115943126 115943185 -36594074 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1469 366 91 0 0 chr5 115943242 115943297 -36593962 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1469 211 167 0 45 chr5 115943297 115943341 -36593918 + C-rich Low_complexity Low_complexity 3 44 0 1 1469 601 221 40 0 chr5 115943341 115943476 -36593783 - ID_B1 SINE B4 -7 217 75 1 1469 249 33 0 0 chr5 115943756 115943786 -36593473 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1469 333 342 9 0 chr5 115944065 115944179 -36593080 + MIR SINE MIR 30 144 -118 1 1469 273 75 0 0 chr5 115944238 115944278 -36592981 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1469 358 314 25 25 chr5 115944313 115944434 -36592825 + MER5B DNA MER1_type 50 170 -8 1 1469 353 297 31 0 chr5 115944911 115945028 -36592231 + MIRm SINE MIR 44 160 -48 1 1469 450 135 0 0 chr5 115945042 115945116 -36592143 + RLTR18B LTR ERVK 1 74 -438 1 1469 646 142 0 9 chr5 115945122 115945229 -36592030 + B3 SINE B2 2 107 -109 1 1469 1638 156 24 92 chr5 115945270 115945569 -36591690 - RMER17C LTR ERVK 0 410 123 1 1469 1193 42 21 0 chr5 115945569 115945713 -36591546 + B1_Mm SINE Alu 1 147 0 1 1469 1638 163 20 129 chr5 115945713 115945923 -36591336 - RMER17C LTR ERVK -614 344 16 1 1469 2098 212 15 34 chr5 115945903 115946368 -36590891 + RLTR18B LTR ERVK 53 508 -4 1 1469 283 188 48 22 chr5 115946371 115946467 -36590792 + B1F SINE Alu 18 116 -1 1 1469 987 125 7 7 chr5 115946559 115946704 -36590555 - B1_Mus2 SINE Alu -2 145 1 1 1469 1145 184 5 5 chr5 115946704 115946901 -36590358 - B3 SINE B2 -15 201 5 1 1469 867 244 19 28 chr5 115946915 115947130 -36590129 - ID_B1 SINE B4 -3 221 9 1 1469 1580 57 0 5 chr5 115947468 115947663 -36589596 - B2_Mm2 SINE B2 -1 194 1 1 1469 348 83 0 0 chr5 115947675 115947723 -36589536 + (TTA)n Simple_repeat Simple_repeat 1 48 0 1 1469 482 231 29 0 chr5 115947723 115947827 -36589432 - B1_Mur1 SINE Alu -14 135 29 1 1469 223 140 17 50 chr5 115947930 115947990 -36589269 + CT-rich Low_complexity Low_complexity 1 58 0 1 1469 570 281 23 19 chr5 115948088 115948134 -36589125 - B3 SINE B2 0 216 173 1 1469 330 26 0 0 chr5 115948134 115948173 -36589086 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1469 570 281 23 19 chr5 115948173 115948340 -36588919 - B3 SINE B2 -44 172 3 1 1469 1243 42 6 6 chr5 115948839 115949005 -36588254 - B2_Mm1a SINE B2 -19 174 9 1 1469 264 249 42 14 chr5 115949000 115949079 -36588180 - B1F1 SINE Alu -9 140 60 1 1469 859 171 192 6 chr5 115949090 115949272 -36587987 + B3 SINE B2 1 216 0 1 1469 21 0 0 31 chr5 115949283 115949302 -36587957 + AT_rich Low_complexity Low_complexity 1 19 0 1 1469 734 130 75 55 chr5 115949302 115949448 -36587811 + B1_Mur4 SINE Alu 1 149 -1 1 1469 21 0 0 31 chr5 115949448 115949460 -36587799 + AT_rich Low_complexity Low_complexity 1 12 0 1 1469 788 80 0 9 chr5 115949503 115949617 -36587642 + (GAAA)n Simple_repeat Simple_repeat 4 116 0 1 1469 2200 82 0 73 chr5 115949637 115949907 -36587352 + ORR1A2 LTR MaLR 1 269 -58 1 1469 1622 17 22 0 chr5 115949907 115950088 -36587171 + B2_Mm1t SINE B2 2 186 -7 1 1469 2200 82 0 73 chr5 115950088 115950115 -36587144 + ORR1A2 LTR MaLR 270 287 -40 1 1469 1118 60 0 0 chr5 115950115 115950248 -36587011 + B1_Mus1 SINE Alu 2 134 -14 1 1469 315 0 0 0 chr5 115950248 115950283 -36586976 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1 1469 2200 82 0 73 chr5 115950283 115950327 -36586932 + ORR1A2 LTR MaLR 288 318 -9 1 1469 705 251 63 28 chr5 115950922 115951176 -36586083 + L1ME2 LINE L1 5629 5891 -273 1 1469 1626 36 0 10 chr5 115951296 115951490 -36585769 + B2_Mm1a SINE B2 2 193 0 1 1469 1381 68 0 94 chr5 115951507 115951719 -36585540 + B2_Mm2 SINE B2 1 192 -3 1 1469 395 261 102 22 chr5 115951797 115951934 -36585325 + L1ME2 LINE L1 5945 6092 -72 1 1469 661 111 94 0 chr5 115952066 115952183 -36585076 + B1_Mur3 SINE Alu 21 148 -1 1 1469 409 260 97 145 chr5 115952193 115952400 -36584859 + B3A SINE B2 1 197 -1 1 1469 1159 88 0 0 chr5 115952408 115952556 -36584703 + B1_Mus1 SINE Alu 1 148 0 1 1469 606 224 13 39 chr5 115952573 115952726 -36584533 + B1_Mur1 SINE Alu 1 149 0 1 1469 964 139 0 0 chr5 115952731 115952875 -36584384 + B1_Mur4 SINE Alu 6 149 -1 1 1469 231 317 52 69 chr5 115953297 115953470 -36583789 + L1M5 LINE L1 5615 5784 -340 1 1469 1211 161 22 44 chr5 115953530 115953757 -36583502 - URR1B DNA MER1_type 0 225 4 1 1469 710 249 116 5 chr5 115953804 115954002 -36583257 + ID_B1 SINE B4 1 220 -4 1 1469 1292 106 62 0 chr5 115954088 115954267 -36582992 - B2_Mm2 SINE B2 -5 190 1 1 1469 1682 201 30 24 chr5 115954296 115954668 -36582591 - ORR1D1 LTR MaLR 0 374 1 1 1469 265 328 0 0 chr5 115954690 115954754 -36582505 - tRNA-Ala-GCY_ tRNA tRNA -1 74 11 1 1469 1094 102 7 0 chr5 115954777 115954924 -36582335 - B1_Mus1 SINE Alu 0 148 1 1 1469 616 196 9 26 chr5 115954933 115955048 -36582211 - PB1D9 SINE Alu -6 114 2 1 1469 487 293 0 0 chr5 115955077 115955200 -36582059 - ID_B1 SINE B4 -9 215 93 1 1469 234 0 0 0 chr5 115955219 115955245 -36582014 + (TATG)n Simple_repeat Simple_repeat 4 29 0 1 1469 586 246 0 50 chr5 115955245 115955386 -36581873 - ID_B1 SINE B4 -9 215 82 1 1469 189 0 0 0 chr5 115955386 115955407 -36581852 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1469 329 265 43 57 chr5 115955440 115955580 -36581679 - ID_B1 SINE B4 -9 215 78 1 1469 1130 50 43 0 chr5 115955858 115955997 -36581262 + B1_Mus1 SINE Alu 3 147 -1 1 1469 1522 33 50 0 chr5 115956001 115956181 -36581078 + B2_Mm1t SINE B2 2 190 -3 1 1469 494 51 0 48 chr5 115956244 115956327 -36580932 + (GA)n Simple_repeat Simple_repeat 2 80 0 1 1469 241 167 21 0 chr5 115956703 115956751 -36580508 + (CGG)n Simple_repeat Simple_repeat 3 51 0 1 1469 24 0 0 0 chr5 115956902 115956926 -36580333 + GC_rich Low_complexity Low_complexity 1 24 0 1 1469 653 213 44 7 chr5 115960690 115960827 -36576432 - B1_Mur2 SINE Alu -2 147 6 1 1469 1189 56 7 0 chr5 115960861 115961005 -36576254 + B1_Mus1 SINE Alu 3 147 -1 1 1469 233 274 62 21 chr5 115961207 115961304 -36575955 - MIR SINE MIR -132 130 30 1 1469 295 140 11 23 chr5 115961329 115961417 -36575842 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 1 1469 740 85 39 0 chr5 115961440 115961570 -36575689 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 1 1469 495 216 9 35 chr5 115961571 115961686 -36575573 - PB1D9 SINE Alu -8 112 1 1 1469 391 286 57 7 chr5 115961696 115961837 -36575422 - B1F SINE Alu -1 148 1 1 1469 439 209 0 106 chr5 115962209 115962332 -36574927 + PB1D9 SINE Alu 9 118 -2 1 1469 584 218 8 8 chr5 115962795 115962920 -36574339 - B1_Mus2 SINE Alu -21 126 2 1 1469 489 297 36 12 chr5 115963079 115963258 -36574001 - B3 SINE B2 -7 188 1 1 1469 826 237 35 57 chr5 115963263 115963491 -36573768 - ID_B1 SINE B4 0 224 2 1 1469 601 253 174 10 chr5 115963523 115963719 -36573540 + B4A SINE B4 3 230 -62 1 1469 216 0 0 0 chr5 115963719 115963743 -36573516 + (GCTG)n Simple_repeat Simple_repeat 2 25 0 1 1469 554 231 8 8 chr5 115963744 115963866 -36573393 + RSINE1 SINE B4 21 142 -23 1 1469 355 313 103 16 chr5 115963898 115964083 -36573176 - MER2 DNA MER2_type -143 202 2 1 1469 234 0 0 0 chr5 115965693 115965719 -36571540 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1469 680 251 27 21 chr5 115965724 115965911 -36571348 - B3 SINE B2 -17 199 12 1 1469 462 18 0 0 chr5 115966010 115966065 -36571194 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1469 370 171 65 13 chr5 115966096 115966173 -36571086 - RSINE1 SINE B4 -35 130 50 1 1469 285 29 0 0 chr5 115966367 115966401 -36570858 + (CTCG)n Simple_repeat Simple_repeat 1 34 0 1 1469 1052 58 0 0 chr5 115966904 115967042 -36570217 - B1_Mus1 SINE Alu 0 148 11 1 1469 391 233 36 126 chr5 115966939 115967106 -36570153 - MT2B LTR ERVL -337 264 113 1 1469 451 213 75 52 chr5 115967086 115967220 -36570039 - B1_Mus1 SINE Alu -3 145 9 1 1469 229 299 75 25 chr5 115967212 115967307 -36569952 + B4A SINE B4 116 217 -75 1 1469 191 36 0 35 chr5 115967307 115967336 -36569923 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1469 229 299 75 25 chr5 115967345 115967360 -36569899 + B4A SINE B4 218 241 -51 1 1469 1283 27 0 0 chr5 115967404 115967551 -36569708 - B1_Mus1 SINE Alu 0 148 2 1 1469 29 0 0 0 chr5 115967913 115967942 -36569317 + AT_rich Low_complexity Low_complexity 1 29 0 1 1469 1088 54 0 108 chr5 115967991 115968177 -36569082 - B2_Mm2 SINE B2 -3 192 27 1 1469 1309 20 0 0 chr5 115968197 115968343 -36568916 - B1_Mm SINE Alu 0 147 2 1 1469 257 100 0 0 chr5 115968344 115968384 -36568875 - B2_Mm2 SINE B2 -155 40 1 1 1469 980 171 111 11 chr5 115968394 115968583 -36568676 - B3 SINE B2 -8 208 1 1 1469 523 233 0 32 chr5 115968603 115968727 -36568532 - PB1D7 SINE Alu 0 120 1 1 1469 1180 54 0 26 chr5 115968832 115968845 -36568414 - B1_Mus1 SINE Alu 0 148 138 1 1469 216 67 0 0 chr5 115968845 115968875 -36568384 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1469 1180 54 0 26 chr5 115968875 115969012 -36568247 - B1_Mus1 SINE Alu -11 137 2 1 1469 404 272 26 9 chr5 115969478 115969593 -36567666 + PB1D7 SINE Alu 1 117 -3 1 1469 829 260 58 14 chr5 115969593 115969753 -36567506 + B3 SINE B2 1 167 -49 1 1469 757 74 66 0 chr5 115969753 115970009 -36567250 + (CATA)n Simple_repeat Simple_repeat 1 272 0 1 1469 829 260 58 14 chr5 115970009 115970054 -36567205 + B3 SINE B2 168 215 -1 1 1469 623 228 80 43 chr5 115971135 115971323 -36565936 - ID_B1 SINE B4 -1 223 29 1 1469 375 78 0 0 chr5 115971359 115971410 -36565849 + (TCC)n Simple_repeat Simple_repeat 3 53 0 1 1469 1039 96 0 0 chr5 115971417 115971552 -36565707 - B1_Mur4 SINE Alu -15 135 1 1 1469 236 278 87 8 chr5 115972008 115972135 -36565124 - L1M5 LINE L1 -3627 2519 2383 1 1469 252 100 0 0 chr5 115972520 115972560 -36564699 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1469 335 281 0 22 chr5 115972741 115972832 -36564427 - PB1 SINE Alu -2 125 37 1 1469 868 183 22 22 chr5 115972909 115973093 -36564166 - RLTR11A2 LTR ERVK -25 502 319 1 1469 474 258 41 62 chr5 115973111 115973305 -36563954 - RLTR11A2 LTR ERVK -304 223 34 1 1469 830 57 57 0 chr5 115973663 115973785 -36563474 + B1_Mur2 SINE Alu 9 137 -12 1 1469 339 25 0 0 chr5 115973794 115973834 -36563425 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1469 251 300 12 48 chr5 115973868 115973952 -36563307 + ID4_ SINE ID 3 83 0 1 1469 206 362 52 71 chr5 115974650 115974861 -36562398 - L2b LINE L2 -2 3373 3167 1 1469 231 266 165 0 chr5 115977185 115977264 -36559995 - B1F SINE Alu -57 92 1 1 1469 950 52 59 0 chr5 115977271 115977406 -36559853 - B1_Mus1 SINE Alu 0 148 6 1 1469 439 221 51 34 chr5 115977303 115977420 -36559839 - B4 SINE B4 -94 198 80 1 1469 214 250 33 77 chr5 115977755 115977846 -36559413 - B4A SINE B4 -201 91 5 1 1469 1267 47 0 0 chr5 115978583 115978731 -36558528 - B1_Mus1 SINE Alu 0 148 1 1 1469 293 279 0 0 chr5 115978835 115978903 -36558356 - RMER15 LTR ERVL -105 470 403 1 1469 250 352 19 9 chr5 115979713 115979819 -36557440 + Tigger16b DNA Tigger 227 333 -4 1 1469 297 0 0 0 chr5 115981168 115981201 -36556058 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1469 213 39 0 0 chr5 115981201 115981226 -36556033 + (CG)n Simple_repeat Simple_repeat 2 27 0 1 1469 185 59 59 0 chr5 115982331 115982365 -36554894 + (TCTG)n Simple_repeat Simple_repeat 1 36 0 1 1469 332 306 127 0 chr5 115982910 115983044 -36554215 + B3A SINE B2 25 175 -23 1 1469 380 271 92 8 chr5 115983044 115983163 -36554096 + RSINE1 SINE B4 37 165 0 1 1469 888 218 101 0 chr5 115983193 115983381 -36553878 - B3 SINE B2 -8 208 2 1 1469 328 240 99 10 chr5 115983418 115983519 -36553740 + PB1D7 SINE Alu 3 112 -8 1 1469 285 75 0 0 chr5 115983847 115983887 -36553372 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1469 465 113 127 36 chr5 115984456 115984566 -36552693 + B1_Mus2 SINE Alu 12 131 -16 1 1469 510 235 5 135 chr5 115986293 115986500 -36550759 - MT2A LTR ERVL -7 526 347 1 1469 1395 197 59 73 chr5 115986568 115986924 -36550335 - RLTR18 LTR ERVK -265 351 1 1 1469 299 300 156 62 chr5 115986924 115986967 -36550292 - MT2A LTR ERVL -189 412 357 1 1469 642 60 0 0 chr5 115986967 115987050 -36550209 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1469 383 214 16 85 chr5 115987050 115987151 -36550108 - MT2A LTR ERVL -353 180 98 1 1469 268 146 164 0 chr5 115987154 115987209 -36550050 + B2_Mm2 SINE B2 1 64 -131 1 1469 1500 54 11 0 chr5 115987256 115987442 -36549817 + B2_Mm1t SINE B2 3 190 -3 1 1469 1153 97 0 0 chr5 115987452 115987597 -36549662 + B1_Mus2 SINE Alu 3 147 0 1 1469 410 162 119 20 chr5 115987630 115987731 -36549528 - MT2A LTR ERVL -416 117 7 1 1469 435 272 0 19 chr5 115988349 115988454 -36548805 + RSINE1 SINE B4 31 133 -32 1 1469 216 0 0 0 chr5 115989650 115989674 -36547585 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1469 779 161 42 0 chr5 115989677 115989820 -36547439 - B1_Mur3 SINE Alu 0 149 1 1 1469 1246 48 0 0 chr5 115990014 115990161 -36547098 + B1_Mus2 SINE Alu 1 147 0 1 1469 869 214 35 15 chr5 115990442 115990641 -36546618 - B3 SINE B2 -10 206 4 1 1469 1606 37 0 5 chr5 115990811 115991001 -36546258 - B2_Mm2 SINE B2 -6 189 1 1 1469 460 259 151 6 chr5 115991025 115991184 -36546075 - B3A SINE B2 -16 182 1 1 1469 674 223 107 13 chr5 115991214 115991364 -36545895 - RSINE1 SINE B4 0 165 2 1 1469 441 0 0 0 chr5 115991383 115991432 -36545827 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 1 1469 402 304 86 12 chr5 115991447 115991610 -36545649 + B4A SINE B4 5 179 -113 1 1469 394 147 0 62 chr5 115991638 115991718 -36545541 + B1_Mur2 SINE Alu 73 147 -2 1 1469 251 260 97 80 chr5 115991726 115991839 -36545420 + RSINE1 SINE B4 3 117 -48 1 1469 1119 89 0 0 chr5 115991844 115991990 -36545269 + B1_Mus1 SINE Alu 3 148 0 1 1469 233 29 0 29 chr5 115991991 115992026 -36545233 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1 1469 286 242 15 0 chr5 115992278 115992344 -36544915 + PB1D10 SINE Alu 41 107 -10 1 1469 212 391 72 21 chr5 115993286 115993479 -36543780 + MIRb SINE MIR 34 236 -32 1 1469 182 37 0 36 chr5 115995226 115995254 -36542005 + (TCCC)n Simple_repeat Simple_repeat 2 28 0 1 1469 382 309 42 43 chr5 115996080 115996229 -36541030 + B1F SINE Alu 1 148 -1 1 1469 401 252 160 30 chr5 115996370 115996501 -36540758 - B1F SINE Alu -1 148 1 1 1469 240 348 108 29 chr5 115996379 115996518 -36540741 - B4A SINE B4 -74 218 69 1 1470 311 359 103 19 chr5 115999355 115999568 -36537691 + MIR SINE MIR 4 234 -28 1 1470 274 224 0 96 chr5 115999583 115999596 -36537663 - B4A SINE B4 -139 153 127 1 1470 299 161 0 0 chr5 115999596 115999652 -36537607 - B1F2 SINE Alu -93 56 1 1 1470 274 224 0 96 chr5 115999652 115999677 -36537582 - B4A SINE B4 -139 126 69 1 1470 455 0 18 0 chr5 116001097 116001152 -36536107 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1470 195 42 0 0 chr5 116001315 116001339 -36535920 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 1470 3237 56 20 197 chr5 116006759 116006910 -36530349 + MT2_Mm LTR ERVL 1 130 -363 3 1470 1231 48 0 0 chr5 116006910 116007056 -36530203 - B1_Mm SINE Alu 0 147 2 4 1470 3237 56 20 197 chr5 116007056 116007503 -36529756 + MT2_Mm LTR ERVL 131 493 0 3 1470 225 205 0 0 chr5 116007921 116007960 -36529299 + ID4_ SINE ID 26 64 -19 5 1470 612 23 35 0 chr5 116008107 116008193 -36529066 + (TA)n Simple_repeat Simple_repeat 2 90 0 6 1470 463 316 60 22 chr5 116008353 116008618 -36528641 - L2a LINE L2 -10 3377 3105 7 1470 1237 48 0 0 chr5 116008660 116008807 -36528452 + B1_Mm SINE Alu 1 147 0 8 1470 1073 65 51 0 chr5 116009037 116009175 -36528084 + B1_Mus1 SINE Alu 4 148 0 9 1470 243 260 198 0 chr5 116010429 116010525 -36526734 - PB1D7 SINE Alu -5 115 1 1 1470 192 40 0 0 chr5 116011910 116011935 -36525324 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1470 900 104 58 22 chr5 116011935 116012062 -36525197 - B1_Mus1 SINE Alu -13 135 1 1 1470 706 162 219 0 chr5 116012709 116012869 -36524390 - B2_Mm2 SINE B2 0 195 1 1 1470 195 204 0 0 chr5 116013323 116013377 -36523882 + (CTG)n Simple_repeat Simple_repeat 3 56 0 1 1470 925 42 83 0 chr5 116014669 116014789 -36522470 - B1_Mus2 SINE Alu -16 131 2 1 1470 276 285 13 13 chr5 116015323 116015476 -36521783 + (CGG)n Simple_repeat Simple_repeat 2 154 0 1 1470 774 132 12 106 chr5 116016120 116016281 -36520978 + B1_Mus1 SINE Alu 2 147 -1 1 1470 22 0 0 0 chr5 116016282 116016304 -36520955 + AT_rich Low_complexity Low_complexity 1 22 0 1 1470 288 273 34 11 chr5 116016908 116016997 -36520262 - BC1_Mm scRNA scRNA -59 93 3 1 1470 395 237 0 30 chr5 116017141 116017241 -36520018 + PB1D9 SINE Alu 24 120 0 2 1470 698 217 24 53 chr5 116017356 116017526 -36519733 + RSINE1 SINE B4 1 165 0 2 1470 646 156 78 8 chr5 116017842 116017971 -36519288 - B1_Mur3 SINE Alu -7 142 5 2 1470 306 264 119 51 chr5 116018104 116018280 -36518979 + HAL1 LINE L1 1312 1499 -1008 2 1470 530 144 153 0 chr5 116019024 116019135 -36518124 + B1_Mm SINE Alu 1 128 -19 2 1470 246 32 0 0 chr5 116019147 116019178 -36518081 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1470 239 131 213 0 chr5 116019265 116019326 -36517933 + RSINE1 SINE B4 57 130 -35 2 1470 457 239 92 0 chr5 116020118 116020227 -36517032 - PB1D9 SINE Alu -1 119 1 2 1470 1177 58 0 0 chr5 116020391 116020530 -36516729 - B1_Mus2 SINE Alu -8 139 1 2 1470 894 209 63 0 chr5 116020542 116020733 -36516526 - B3 SINE B2 -5 211 9 2 1470 539 291 24 78 chr5 116021118 116021323 -36515936 + MER20 DNA MER1_type 1 194 -25 3 1470 225 0 0 0 chr5 116021342 116021367 -36515892 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1470 910 149 7 13 chr5 116021690 116021840 -36515419 - B1_Mur4 SINE Alu 0 150 2 3 1470 1372 84 5 26 chr5 116021853 116022048 -36515211 - B2_Mm2 SINE B2 -4 191 1 3 1470 262 287 52 61 chr5 116022272 116022387 -36514872 - PB1D10 SINE Alu -3 114 1 3 1470 393 264 9 9 chr5 116022439 116022546 -36514713 - PB1D7 SINE Alu -13 107 1 3 1470 226 308 171 0 chr5 116022554 116022700 -36514559 - Tigger15a DNA TcMar -431 284 114 3 1470 207 0 0 0 chr5 116022830 116022853 -36514406 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1470 818 126 40 53 chr5 116023683 116023834 -36513425 - B1_Mur2 SINE Alu 0 149 1 3 1470 437 277 42 66 chr5 116023874 116024040 -36513219 - RSINE1 SINE B4 0 165 4 3 1470 565 233 90 0 chr5 116024085 116024218 -36513041 - B1_Mur1 SINE Alu -3 146 2 4 1470 604 260 113 46 chr5 116024702 116024940 -36512319 + MIRb SINE MIR 1 254 -14 4 1470 763 207 91 11 chr5 116025515 116025691 -36511568 - B3 SINE B2 0 216 27 4 1470 1279 27 0 7 chr5 116025728 116025876 -36511383 - B1_Mm SINE Alu 0 147 1 4 1470 1567 43 5 0 chr5 116027670 116027854 -36509405 - B2_Mm1a SINE B2 -7 186 2 4 1470 335 171 71 0 chr5 116027889 116027959 -36509300 - PB1D9 SINE Alu -34 86 12 4 1470 24 0 0 0 chr5 116028034 116028058 -36509201 + AT_rich Low_complexity Low_complexity 1 24 0 4 1470 652 161 52 30 chr5 116028059 116028193 -36509066 - B1_Mur1 SINE Alu 0 149 13 4 1470 936 244 42 0 chr5 116028505 116028698 -36508561 + B3 SINE B2 1 201 -15 4 1470 545 0 15 0 chr5 116030031 116030096 -36507163 + (TG)n Simple_repeat Simple_repeat 1 66 0 4 1470 365 257 191 0 chr5 116030096 116030232 -36507027 - B3 SINE B2 -53 163 2 5 1470 467 215 113 6 chr5 116031927 116032086 -36505173 - Lx5 LINE L1 -7 7043 6868 5 1470 410 270 95 0 chr5 116032733 116032859 -36504400 + ID_B1 SINE B4 86 223 -1 5 1470 346 154 168 42 chr5 116032899 116032994 -36504265 - PB1D9 SINE Alu -1 119 13 5 1470 24 0 0 0 chr5 116033217 116033241 -36504018 + AT_rich Low_complexity Low_complexity 1 24 0 5 1470 821 186 98 0 chr5 116033840 116034023 -36503236 - B3 SINE B2 -11 205 5 5 1470 573 230 41 143 chr5 116034057 116034113 -36503146 - MTE2a LTR MaLR 0 379 326 5 1470 1098 89 7 0 chr5 116034113 116034259 -36503000 + B1_Mus2 SINE Alu 1 147 0 5 1470 573 230 41 143 chr5 116034259 116034446 -36502813 - MTE2a LTR MaLR -54 325 161 5 1470 520 239 197 11 chr5 116034597 116034775 -36502484 + B3 SINE B2 6 216 0 5 1470 290 245 117 0 chr5 116035096 116035190 -36502069 - MTE2a LTR MaLR -229 130 26 5 1470 1018 135 14 0 chr5 116035974 116036122 -36501137 - B1_Mur4 SINE Alu 0 150 1 5 1470 204 191 13 117 chr5 116036757 116036793 -36500466 + polypyrimidine Low_complexity Low_complexity 37 71 0 6 1470 298 150 179 107 chr5 116036793 116036905 -36500354 - PB1D9 SINE Alu 0 120 1 6 1470 204 191 13 117 chr5 116036905 116036923 -36500336 + polypyrimidine Low_complexity Low_complexity 24 36 0 6 1470 525 208 234 18 chr5 116036923 116037094 -36500165 - B3 SINE B2 -6 210 3 6 1470 204 191 13 117 chr5 116037094 116037115 -36500144 + polypyrimidine Low_complexity Low_complexity 3 23 0 6 1470 1457 51 45 0 chr5 116037257 116037434 -36499825 + B2_Mm1t SINE B2 2 186 -7 6 1470 231 36 0 0 chr5 116037587 116037615 -36499644 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1470 421 235 0 150 chr5 116037617 116037757 -36499502 - RSINE1 SINE B4 -44 121 3 6 1470 732 128 51 0 chr5 116038372 116038489 -36498770 - B1_Mur4 SINE Alu -6 144 22 6 1470 1257 41 0 0 chr5 116039655 116039802 -36497457 - B1_Mm SINE Alu 0 147 1 6 1470 385 252 50 0 chr5 116040650 116040749 -36496510 + PB1D10 SINE Alu 1 104 -13 7 1470 252 314 55 37 chr5 116040762 116040871 -36496388 + B4A SINE B4 122 232 -60 7 1470 357 330 103 64 chr5 116041429 116041584 -36495675 + L2a LINE L2 3179 3349 -77 7 1470 285 29 0 0 chr5 116041584 116041618 -36495641 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1470 357 330 103 64 chr5 116041618 116041695 -36495564 + L2a LINE L2 3350 3420 -6 7 1470 358 152 298 51 chr5 116043201 116043326 -36493933 + B1_Mus1 SINE Alu 21 147 -1 7 1470 422 284 0 9 chr5 116043318 116043428 -36493831 + PB1D10 SINE Alu 6 114 -3 7 1470 296 231 88 0 chr5 116044629 116044720 -36492539 - PB1D9 SINE Alu -20 100 2 7 1470 1186 249 86 42 chr5 116045683 116046019 -36491240 - MTE2a LTR MaLR -8 371 21 7 1470 650 68 76 19 chr5 116046225 116046330 -36490929 - B1_Mus1 SINE Alu -1 147 37 7 1470 343 274 111 88 chr5 116046229 116046343 -36490916 - ID_B1 SINE B4 -3 221 107 7 1470 547 213 173 0 chr5 116046343 116046470 -36490789 + B1_Mur2 SINE Alu 1 149 0 8 1470 343 274 111 88 chr5 116046470 116046571 -36490688 - ID_B1 SINE B4 -118 106 1 7 1470 246 342 90 37 chr5 116047519 116047707 -36489552 + MIRm SINE MIR 2 199 -77 8 1470 2276 138 73 0 chr5 116047890 116048274 -36488985 - MTC LTR MaLR -9 412 1 8 1470 225 316 26 0 chr5 116049438 116049514 -36487745 + (CATG)n Simple_repeat Simple_repeat 1 78 0 8 1470 228 250 261 0 chr5 116049597 116049685 -36487574 + PB1D9 SINE Alu 1 111 -9 8 1470 990 223 83 75 chr5 116050178 116050411 -36486848 - RCHARR1 DNA MER1_type 0 974 743 8 1470 1598 101 0 46 chr5 116050411 116050649 -36486610 - L1_Mus1 LINE L1 0 6567 6341 8 1470 990 223 83 75 chr5 116050649 116050788 -36486471 - RCHARR1 DNA MER1_type -232 742 599 8 1470 509 104 0 0 chr5 116050816 116050893 -36486366 - L1_Mus1 LINE L1 0 6567 6491 8 1470 1210 55 0 14 chr5 116050904 116051052 -36486207 - B1_Mus1 SINE Alu 0 148 3 8 1470 387 71 0 0 chr5 116051082 116051138 -36486121 - B1_Mm SINE Alu 0 147 92 8 1470 348 202 149 0 chr5 116051183 116051277 -36485982 - RSINE1 SINE B4 -17 148 41 9 1470 245 187 0 148 chr5 116051309 116051397 -36485862 - RCHARR1 DNA MER1_type -397 577 503 8 1470 641 157 78 0 chr5 116051450 116051565 -36485694 - B1_Mur1 SINE Alu -17 132 9 9 1470 1136 309 56 66 chr5 116051585 116051931 -36485328 - RCHARR1 DNA MER1_type -480 494 141 8 1470 1150 56 7 0 chr5 116051931 116052073 -36485186 - B1_Mus2 SINE Alu -4 143 1 9 1470 1136 309 56 66 chr5 116052073 116052225 -36485034 - RCHARR1 DNA MER1_type -834 140 1 8 1470 336 48 0 0 chr5 116052686 116052728 -36484531 + (CACG)n Simple_repeat Simple_repeat 1 42 0 9 1470 277 302 31 0 chr5 116052903 116052999 -36484260 - B1F1 SINE Alu -42 107 9 9 1470 495 117 233 0 chr5 116053712 116053815 -36483444 - B1_Mus1 SINE Alu -20 128 2 9 1470 241 103 0 25 chr5 116053816 116053856 -36483403 - B3 SINE B2 -176 40 2 9 1470 191 273 36 0 chr5 116054435 116054490 -36482769 - MIR SINE MIR -58 150 94 9 1470 877 199 160 0 chr5 116054526 116054757 -36482502 - MTD LTR MaLR 0 419 152 9 1470 21 36 0 0 chr5 116055371 116055399 -36481860 + AT_rich Low_complexity Low_complexity 1 28 0 9 1470 345 309 56 0 chr5 116055436 116055562 -36481697 - RSINE1 SINE B4 -30 135 3 1 1470 446 252 35 43 chr5 116055632 116055773 -36481486 - ID_B1 SINE B4 -82 142 3 1 1470 460 232 0 10 chr5 116055802 116055902 -36481357 - B1_Mur1 SINE Alu -12 137 39 1 1470 235 231 24 49 chr5 116055832 116055914 -36481345 - RLTR25B LTR ERVK -522 506 427 1 1470 231 252 70 49 chr5 116055914 116056056 -36481203 - L1M4 LINE L1 -752 5432 5288 1 1470 1148 50 43 0 chr5 116057071 116057212 -36480047 + B1_Mus1 SINE Alu 2 148 0 1 1470 304 297 109 52 chr5 116057286 116057371 -36479888 + L1MCa LINE L1 2088 2183 -4325 1 1470 661 161 85 126 chr5 116057371 116057518 -36479741 + B2_Mm2 SINE B2 2 150 -45 1 1470 1370 93 0 20 chr5 116057518 116057715 -36479544 - B2_Mm2 SINE B2 -1 194 2 1 1470 661 161 85 126 chr5 116057715 116057766 -36479493 + B2_Mm2 SINE B2 151 192 -3 1 1470 304 297 109 52 chr5 116057766 116057854 -36479405 + L1MCa LINE L1 2184 2271 -4237 1 1470 259 284 27 13 chr5 116057859 116057880 -36479379 + ID_B1 SINE B4 79 125 -99 1 1470 268 116 23 0 chr5 116057880 116057923 -36479336 + B1F SINE Alu 20 63 -86 1 1470 332 268 118 71 chr5 116057932 116057956 -36479303 + B3 SINE B2 1 23 -193 1 1470 1107 193 35 52 chr5 116057956 116058186 -36479073 + URR1A DNA MER1_type 1 226 0 1 1470 332 268 118 71 chr5 116058186 116058330 -36478929 + B3 SINE B2 24 177 -39 1 1470 742 188 7 53 chr5 116058332 116058484 -36478775 - B1_Mus1 SINE Alu -2 146 2 1 1470 207 0 0 0 chr5 116058494 116058517 -36478742 + (TTG)n Simple_repeat Simple_repeat 1 23 0 1 1470 742 214 7 40 chr5 116058637 116058777 -36478482 + B1F2 SINE Alu 2 138 -11 1 1470 477 34 0 0 chr5 116058777 116058836 -36478423 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1470 584 203 220 0 chr5 116059011 116059129 -36478130 + B1_Mur1 SINE Alu 1 144 -5 1 1470 468 0 0 0 chr5 116060332 116060384 -36476875 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1470 917 104 0 22 chr5 116060500 116060638 -36476621 + B1_Mur4 SINE Alu 16 150 0 1 1470 255 208 105 53 chr5 116062380 116062456 -36474803 - PB1D7 SINE Alu 0 120 41 1 1470 894 181 136 0 chr5 116065964 116066163 -36471096 + URR1A DNA MER1_type 1 226 0 1 1470 757 121 48 0 chr5 116067362 116067486 -36469773 - B1_Mur4 SINE Alu -12 138 9 1 1470 407 247 333 22 chr5 116067498 116067678 -36469581 - B4A SINE B4 -46 246 11 1 1470 290 294 59 0 chr5 116067677 116067779 -36469480 - PB1D7 SINE Alu 0 120 13 1 1470 2511 151 50 0 chr5 116068194 116068591 -36468668 - MTC LTR MaLR -4 417 1 1 1470 253 330 45 0 chr5 116070407 116070495 -36466764 - RSINE1 SINE B4 -67 98 7 1 1470 231 208 19 0 chr5 116070544 116070597 -36466662 - B1_Mus2 SINE Alu -91 56 3 1 1470 229 259 0 49 chr5 116070648 116070709 -36466550 + B4A SINE B4 87 144 -148 1 1470 373 190 38 0 chr5 116070675 116070754 -36466505 + B1_Mus1 SINE Alu 27 108 -40 1 1470 850 103 11 24 chr5 116070976 116071114 -36466145 + B1_Mus1 SINE Alu 1 148 0 1 1470 205 310 45 45 chr5 116071226 116071405 -36465854 - L2 LINE L2 -339 3080 2902 1 1470 496 136 37 37 chr5 116072672 116072779 -36464480 - PB1D9 SINE Alu -1 119 13 1 1470 211 176 0 0 chr5 116072876 116072910 -36464349 + (CCCCG)n Simple_repeat Simple_repeat 1 34 0 1 1470 482 181 127 45 chr5 116073226 116073336 -36463923 + PB1D9 SINE Alu 2 120 0 1 1470 408 250 98 16 chr5 116073396 116073518 -36463741 + ID_B1 SINE B4 93 224 0 1 1470 873 35 0 0 chr5 116074473 116074586 -36462673 - B1_Mm SINE Alu 0 147 35 1 1470 780 170 237 12 chr5 116074609 116074782 -36462477 - B3 SINE B2 -4 212 1 1 1470 1132 57 35 0 chr5 116075185 116075326 -36461933 - B1_Mus1 SINE Alu 0 148 3 1 1470 580 144 149 25 chr5 116075496 116075617 -36461642 - B1_Mus2 SINE Alu -9 138 3 1 1470 345 301 75 0 chr5 116075695 116075788 -36461471 + PB1D7 SINE Alu 8 107 -13 1 1470 1190 23 32 5 chr5 116075806 116076025 -36461234 + (TCTA)n Simple_repeat Simple_repeat 1 225 0 1 1470 427 146 98 33 chr5 116076028 116076120 -36461139 - B1_Mur4 SINE Alu -6 144 47 1 1470 721 294 5 14 chr5 116076192 116076223 -36461036 - B4A SINE B4 0 292 264 1 1470 297 0 0 0 chr5 116076223 116076256 -36461003 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1470 721 303 13 17 chr5 116076256 116076475 -36460784 - B4A SINE B4 -29 263 38 1 1470 1888 167 60 33 chr5 116076810 116077176 -36460083 + ORR1C1 LTR MaLR 3 378 0 1 1470 423 0 0 0 chr5 116077427 116077474 -36459785 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1470 1218 159 0 38 chr5 116077477 116077739 -36459520 + RMER17C LTR ERVK 117 368 -42 1 1470 1063 92 0 0 chr5 116077858 116077989 -36459270 + B1_Mus2 SINE Alu 2 132 -15 1 1470 893 92 43 0 chr5 116077989 116078130 -36459129 + B2_Mm2 SINE B2 40 186 -9 1 1470 282 309 0 12 chr5 116078178 116078260 -36458999 + ID_B1 SINE B4 14 94 -130 1 1470 720 248 47 37 chr5 116078718 116078932 -36458327 - B3 SINE B2 0 216 1 1 1470 402 74 0 0 chr5 116079617 116079671 -36457588 + (TATAG)n Simple_repeat Simple_repeat 4 57 0 1 1470 1568 41 10 15 chr5 116080161 116080357 -36456902 - B2_Mm2 SINE B2 0 195 1 1 1470 676 261 63 39 chr5 116080374 116080581 -36456678 - B3 SINE B2 -4 212 1 1 1470 744 212 157 20 chr5 116081200 116081397 -36455862 + ID_B1 SINE B4 1 224 0 1 1470 252 59 0 0 chr5 116081764 116081798 -36455461 + (CTCG)n Simple_repeat Simple_repeat 1 34 0 1 1470 203 255 37 9 chr5 116081844 116081951 -36455308 + (CGG)n Simple_repeat Simple_repeat 3 112 0 1 1470 210 91 0 0 chr5 116081952 116081985 -36455274 + (GGA)n Simple_repeat Simple_repeat 2 34 0 1 1470 300 78 30 30 chr5 116082089 116082155 -36455104 + (CCCG)n Simple_repeat Simple_repeat 3 68 0 1 1470 23 0 0 0 chr5 116082243 116082266 -36454993 + GC_rich Low_complexity Low_complexity 1 23 0 1 1470 230 81 0 26 chr5 116082269 116082307 -36454952 + (CGGG)n Simple_repeat Simple_repeat 2 38 0 1 1470 29 78 0 0 chr5 116082311 116082375 -36454884 + GC_rich Low_complexity Low_complexity 1 64 0 1 1470 427 344 72 22 chr5 116082486 116082709 -36454550 + MIRb SINE MIR 30 263 -5 1 1470 263 331 134 0 chr5 116082838 116082980 -36454279 + MIRb SINE MIR 106 266 -2 1 1470 195 42 0 0 chr5 116083967 116083991 -36453268 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1470 211 298 50 60 chr5 116084243 116084343 -36452916 - MIRm SINE MIR -94 182 84 1 1470 200 235 0 14 chr5 116085186 116085255 -36452004 + (ATGGTG)n Simple_repeat Simple_repeat 4 71 0 1 1470 364 240 160 0 chr5 116085260 116085381 -36451878 + B1_Mur1 SINE Alu 1 149 0 1 1470 21 0 0 0 chr5 116086251 116086272 -36450987 + AT_rich Low_complexity Low_complexity 1 21 0 1 1470 1131 98 0 0 chr5 116086272 116086435 -36450824 + (CA)n Simple_repeat Simple_repeat 2 164 0 1 1470 650 279 169 0 chr5 116086630 116086813 -36450446 + ID_B1 SINE B4 2 215 -9 1 1470 231 277 67 29 chr5 116086722 116086826 -36450433 + RLTR25B LTR ERVK 441 548 -480 1 1470 306 125 0 0 chr5 116086839 116086887 -36450372 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 1 1470 216 341 77 41 chr5 116086895 116087058 -36450201 + MIRm SINE MIR 1 175 -101 1 1470 210 37 0 0 chr5 116088028 116088055 -36449204 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1470 1103 74 0 0 chr5 116088056 116088191 -36449068 - B1_Mus2 SINE Alu -12 135 1 1 1470 239 272 12 24 chr5 116088209 116088292 -36448967 - L1M5 LINE L1 -592 5648 5567 1 1470 322 167 0 0 chr5 116088360 116088414 -36448845 - ORR1C2 LTR MaLR 0 384 331 1 1470 753 41 0 0 chr5 116088440 116088537 -36448722 - B2_Mm1t SINE B2 -62 131 35 1 1470 1499 176 154 9 chr5 116088540 116088872 -36448387 - ORR1C2 LTR MaLR -2 382 3 1 1470 402 242 98 24 chr5 116088873 116088996 -36448263 - RSINE1 SINE B4 -28 137 6 1 1470 267 188 0 0 chr5 116089093 116089141 -36448118 - B3 SINE B2 -122 94 47 1 1470 293 307 27 0 chr5 116089165 116089240 -36448019 - MER20 DNA MER1_type -142 77 1 1 1470 428 163 128 0 chr5 116090980 116091066 -36446193 - PB1D9 SINE Alu -11 109 13 1 1470 1193 42 21 0 chr5 116092478 116092622 -36444637 + B1_Mus1 SINE Alu 2 148 0 1 1470 301 277 59 10 chr5 116094383 116094485 -36442774 - B3A SINE B2 -16 182 76 1 1470 1546 54 5 0 chr5 116094816 116095001 -36442258 + B2_Mm1a SINE B2 1 186 -7 1 1470 486 254 35 0 chr5 116095001 116095115 -36442144 + B3A SINE B2 2 119 -79 1 1470 1141 135 118 15 chr5 116095194 116095397 -36441862 + URR1B DNA MER1_type 1 224 -1 1 1470 360 189 81 0 chr5 116095424 116095498 -36441761 + PB1D7 SINE Alu 15 94 -26 1 1470 188 135 27 0 chr5 116097547 116097584 -36439675 + G-rich Low_complexity Low_complexity 3 40 0 1 1470 21 36 0 0 chr5 116097697 116097725 -36439534 + AT_rich Low_complexity Low_complexity 1 28 0 1 1470 1439 83 16 5 chr5 116103407 116103600 -36433659 + B2_Mm2 SINE B2 1 195 0 1 1470 323 272 54 27 chr5 116104377 116104494 -36432765 + PB1D7 SINE Alu 1 124 -25 1 1470 236 268 18 0 chr5 116104880 116104936 -36432323 + ID2 SINE ID 16 72 -11 1 1470 261 266 7 0 chr5 116105364 116105440 -36431819 - B1F SINE Alu -12 137 57 1 1470 785 128 8 8 chr5 116105524 116105658 -36431601 - B1_Mur3 SINE Alu -6 143 10 1 1470 387 60 14 29 chr5 116105816 116105885 -36431374 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1470 183 80 0 0 chr5 116106076 116106101 -36431158 + (CTG)n Simple_repeat Simple_repeat 3 27 0 1 1470 352 248 133 35 chr5 116106139 116106252 -36431007 + RSINE1 SINE B4 2 125 -40 2 1470 307 250 50 73 chr5 116106266 116106465 -36430794 + B3 SINE B2 1 195 0 2 1470 770 226 71 11 chr5 116107623 116107806 -36429453 - B3 SINE B2 -22 194 1 2 1470 1147 45 0 0 chr5 116108822 116108956 -36428303 + B1_Mus2 SINE Alu 1 134 -13 2 1470 755 228 88 0 chr5 116109110 116109281 -36427978 - B3 SINE B2 -30 186 1 2 1470 1020 115 7 20 chr5 116109966 116110117 -36427142 - B1_Mur3 SINE Alu 0 149 1 2 1470 288 305 85 0 chr5 116110275 116110357 -36426902 + PB1 SINE Alu 36 124 -3 2 1470 670 249 14 99 chr5 116110393 116110616 -36426643 - ID_B1 SINE B4 -11 213 10 2 1470 750 201 14 7 chr5 116112046 116112191 -36425068 - B1_Mur2 SINE Alu -2 147 2 2 1470 761 211 0 0 chr5 116112402 116112544 -36424715 + URR1B DNA MER1_type 83 224 -1 2 1470 603 193 21 35 chr5 116113115 116113243 -36424016 - PB1D9 SINE Alu 0 148 1 2 1470 320 259 8 136 chr5 116113141 116113266 -36423993 - MT2B LTR ERVL -351 250 142 2 1470 230 257 99 33 chr5 116113969 116114150 -36423109 + L1MC5 LINE L1 7332 7524 -437 2 1470 1431 63 10 10 chr5 116114261 116114453 -36422806 + B2_Mm1t SINE B2 2 193 0 2 1470 1455 59 43 0 chr5 116114456 116114642 -36422617 + B2_Mm2 SINE B2 2 195 0 2 1470 25 31 0 0 chr5 116114648 116114680 -36422579 + AT_rich Low_complexity Low_complexity 1 32 0 2 1470 735 87 58 0 chr5 116114712 116114816 -36422443 + B1_Mur2 SINE Alu 2 111 -38 2 1470 210 71 0 0 chr5 116115152 116115180 -36422079 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1470 246 208 12 72 chr5 116115303 116115386 -36421873 + L1M5 LINE L1 5580 5657 -522 2 1470 847 182 7 7 chr5 116115433 116115582 -36421677 + B3 SINE B2 12 160 -56 2 1470 249 241 23 81 chr5 116115556 116115642 -36421617 + RMER13B LTR ERVK 104 184 -724 2 1470 454 219 130 97 chr5 116115624 116115831 -36421428 + RLTR26 LTR ERVK 241 454 -188 2 1470 692 193 7 22 chr5 116117053 116117191 -36420068 + B1_Mur3 SINE Alu 5 140 -9 2 1470 342 278 57 16 chr5 116117600 116117723 -36419536 + B1F1 SINE Alu 14 140 -9 2 1470 300 302 79 0 chr5 116117832 116117958 -36419301 + RSINE1 SINE B4 2 137 -28 2 1470 497 229 69 0 chr5 116119160 116119291 -36417968 - B1F SINE Alu -9 140 1 2 1470 481 188 41 10 chr5 116123524 116123621 -36413638 - PB1D7 SINE Alu 0 120 21 2 1470 224 30 30 0 chr5 116124243 116124276 -36412983 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1470 826 59 152 0 chr5 116124276 116124394 -36412865 - B1_Mus2 SINE Alu -10 137 2 2 1470 319 282 11 34 chr5 116125284 116125372 -36411887 - RSINE1 SINE B4 -68 97 12 2 1470 342 0 0 0 chr5 116125441 116125479 -36411780 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1470 406 277 70 18 chr5 116125766 116125880 -36411379 + PB1D7 SINE Alu 1 120 0 2 1470 464 216 25 51 chr5 116126030 116126164 -36411095 - B1F2 SINE Alu -2 147 11 2 1470 370 211 0 0 chr5 116126256 116126321 -36410938 + ORR1D1 LTR MaLR 9 73 -301 2 1470 542 95 0 0 chr5 116126321 116126395 -36410864 - RMER19B LTR ERVK 0 902 829 2 1470 634 226 84 48 chr5 116126395 116126671 -36410588 + L1MA5 LINE L1 4435 4742 -1401 2 1470 506 139 0 0 chr5 116126677 116126756 -36410503 + B2_Mm2 SINE B2 1 79 -116 2 1470 229 283 29 115 chr5 116126756 116126781 -36410478 + RSINE1 SINE B4 2 96 -69 2 1470 411 218 150 179 chr5 116126838 116127022 -36410237 + L1MA5 LINE L1 4935 5141 -1002 2 1470 868 106 67 15 chr5 116127022 116127150 -36410109 + B1_Mus1 SINE Alu 4 140 -8 2 1470 198 0 0 0 chr5 116127150 116127172 -36410087 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2 1470 467 209 155 91 chr5 116127177 116127551 -36409708 + L1MA5 LINE L1 5142 5489 -811 2 1470 397 286 55 64 chr5 116127642 116127877 -36409382 + L1_Rod LINE L1 880 1112 -6496 2 1470 6191 232 162 90 chr5 116127866 116128073 -36409186 + L1_Rod LINE L1 1297 1513 -4334 2 1470 570 29 0 0 chr5 116128073 116128141 -36409118 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1470 6191 232 162 90 chr5 116128141 116128954 -36408305 + L1_Rod LINE L1 1514 2439 -3408 2 1470 704 255 198 22 chr5 116128954 116129267 -36407992 + ORR1D2 LTR MaLR 3 370 0 2 1470 6191 232 162 90 chr5 116129267 116129537 -36407722 + L1_Rod LINE L1 2440 2817 -3030 2 1470 207 0 0 0 chr5 116129537 116129560 -36407699 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2 183 6191 232 162 90 chr5 116129560 116130022 -36407237 + L1_Rod LINE L1 2818 3321 -2526 2 1471 547 216 60 0 chr5 116130022 116130138 -36407121 + B1F2 SINE Alu 27 149 0 2 1471 6191 232 162 90 chr5 116130138 116130485 -36406774 + L1_Rod LINE L1 3322 3701 -2146 2 1471 1207 41 0 39 chr5 116130485 116130638 -36406621 + B1_Mus1 SINE Alu 1 147 -1 2 1471 6191 232 162 90 chr5 116130638 116130799 -36406460 + L1_Rod LINE L1 3702 3821 -2026 2 1471 429 20 0 0 chr5 116130799 116130849 -36406410 + (CAA)n Simple_repeat Simple_repeat 2 51 0 2 1471 6191 232 162 90 chr5 116130849 116131888 -36405371 + L1_Rod LINE L1 3822 4960 -887 2 1471 623 249 139 49 chr5 116131888 116132133 -36405126 - ORR1D1 LTR MaLR -107 267 1 2 1471 1454 199 57 0 chr5 116132142 116132383 -36404876 + Lx9 LINE L1 6734 6981 -663 2 1471 486 0 0 0 chr5 116132383 116132437 -36404822 + (CAAAC)n Simple_repeat Simple_repeat 4 57 0 2 1471 1454 224 183 28 chr5 116132437 116132868 -36404391 + Lx9 LINE L1 6982 7486 -158 2 1471 691 301 100 22 chr5 116132990 116133442 -36403817 + L1MA5 LINE L1 5753 6239 -61 2 1471 607 256 82 34 chr5 116133457 116133663 -36403596 - B3 SINE B2 0 216 1 2 1471 786 173 30 84 chr5 116133693 116133847 -36403412 + B2_Mm2 SINE B2 2 151 -44 2 1471 312 48 0 0 chr5 116133847 116133889 -36403370 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 2 1471 786 173 30 84 chr5 116133889 116133936 -36403323 + B2_Mm2 SINE B2 152 191 -4 2 1471 1178 108 28 0 chr5 116134664 116134840 -36402419 - B2_Mm2 SINE B2 -14 181 1 2 1471 189 301 127 76 chr5 116134915 116135073 -36402186 - MIR3 SINE MIR -23 185 20 2 1471 207 0 0 0 chr5 116135537 116135560 -36401699 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 2 1471 589 241 195 23 chr5 116135575 116135749 -36401510 + B3 SINE B2 1 204 -12 2 1471 236 185 204 0 chr5 116137194 116137248 -36400011 - ID4 SINE ID -14 69 5 2 1471 383 264 27 18 chr5 116137261 116137373 -36399886 - PB1 SINE Alu -7 120 8 2 1471 670 85 271 0 chr5 116137992 116138110 -36399149 - BGLII_B LTR ERVK -3 438 289 2 1471 190 245 94 0 chr5 116138364 116138417 -36398842 + L2a LINE L2 2801 2858 -561 2 1471 811 206 30 8 chr5 116138449 116138621 -36398638 - B3A SINE B2 -15 180 1 2 1471 216 0 0 0 chr5 116138690 116138714 -36398545 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1471 1336 110 0 5 chr5 116138821 116139013 -36398246 - B2_Mm2 SINE B2 -4 191 1 2 1471 204 330 83 17 chr5 116139062 116139182 -36398077 + L2a LINE L2 3032 3159 -267 2 1471 410 281 68 56 chr5 116139199 116139361 -36397898 + MLT1A LTR MaLR 11 174 -200 2 1471 7246 136 38 24 chr5 116139426 116140697 -36396562 - Lx6 LINE L1 -1060 4820 3532 2 1471 4672 157 66 50 chr5 116140700 116141782 -36395477 + Lx6 LINE L1 4873 5974 -1486 2 1471 2270 147 58 12 chr5 116141786 116142213 -36395046 - RMER6A LTR ERVK 0 756 310 2 1471 1530 119 157 61 chr5 116142610 116142904 -36394355 - RMER6A LTR ERVK -434 322 1 2 1471 5271 240 76 41 chr5 116142906 116143648 -36393611 + Lx6 LINE L1 5973 6736 -724 2 1471 234 0 0 0 chr5 116143648 116143674 -36393585 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1471 5271 240 76 41 chr5 116143674 116144351 -36392908 + Lx6 LINE L1 6737 7441 -19 2 1471 332 235 125 19 chr5 116144511 116144615 -36392644 + MLT1A LTR MaLR 267 381 -27 2 1471 240 314 158 11 chr5 116144636 116144813 -36392446 + L2a LINE L2 3212 3414 -12 2 1471 560 212 79 14 chr5 116145514 116145653 -36391606 - B1_Mur2 SINE Alu -1 148 1 2 1471 413 198 0 44 chr5 116145729 116145819 -36391440 + B4 SINE B4 2 87 -205 2 1471 228 307 0 82 chr5 116145819 116145839 -36391420 + BC1_Mm scRNA scRNA 2 102 -50 2 1471 252 0 0 0 chr5 116145839 116145867 -36391392 + (CAGG)n Simple_repeat Simple_repeat 2 29 0 2 1471 818 257 17 6 chr5 116145867 116146043 -36391216 + B3 SINE B2 10 187 -29 2 1471 1154 75 0 7 chr5 116146062 116146209 -36391050 - B1_Mus2 SINE Alu 0 147 2 2 1471 816 182 83 57 chr5 116146240 116146432 -36390827 + B4 SINE B4 82 278 -14 2 1471 969 139 250 0 chr5 116147315 116147487 -36389772 - B3 SINE B2 0 216 2 2 1471 881 73 28 48 chr5 116147557 116147734 -36389525 + RMER17B LTR ERVK 310 506 -383 2 1471 1408 75 0 21 chr5 116148687 116148878 -36388381 + B2_Mm2 SINE B2 1 187 -8 2 1471 1229 31 124 0 chr5 116148880 116149041 -36388218 - L1Md_F2 LINE L1 -15 6567 6387 2 1471 282 257 57 0 chr5 116149179 116149249 -36388010 + L1ME3B LINE L1 5620 5693 -431 2 1471 234 234 25 49 chr5 116149300 116149381 -36387878 - Charlie7a DNA MER1_type -69 203 125 2 1471 297 335 68 31 chr5 116149384 116149738 -36387521 + L1ME3B LINE L1 5683 6049 -191 2 1471 331 262 66 51 chr5 116150033 116150170 -36387089 + MIRb SINE MIR 92 230 -38 2 1471 314 294 130 48 chr5 116150340 116150547 -36386712 + MLT1E1 LTR MaLR 297 520 -134 2 1471 342 289 115 0 chr5 116151735 116151839 -36385420 + B1F SINE Alu 26 141 -8 2 1471 225 247 178 0 chr5 116152328 116152401 -36384858 + PB1D7 SINE Alu 5 90 -30 2 1471 284 282 99 20 chr5 116152901 116153053 -36384206 + L1ME2z LINE L1 6233 6396 -48 2 1471 192 125 0 0 chr5 116153061 116153093 -36384166 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1471 379 185 93 52 chr5 116153097 116153194 -36384065 - PB1D10 SINE Alu -7 110 10 2 1471 248 298 20 50 chr5 116153111 116153210 -36384049 - B4 SINE B4 -117 175 80 2 1471 338 70 0 0 chr5 116153987 116154030 -36383229 + L1_Mus4 LINE L1 5838 5880 -756 2 1471 2754 168 81 122 chr5 116154031 116154859 -36382400 + RMER17D2 LTR ERVK 1 794 -15 2 1471 5685 65 9 8 chr5 116154870 116155626 -36381633 + L1_Mus4 LINE L1 5876 6632 -4 2 1471 556 193 176 35 chr5 116155750 116155949 -36381310 + L1MA9 LINE L1 6086 6312 0 2 1471 310 264 14 0 chr5 116156038 116156110 -36381149 + MER103 DNA DNA 93 165 -1 2 1471 313 257 0 39 chr5 116156454 116156531 -36380728 - ID_B1 SINE B4 0 224 151 2 1471 965 211 181 25 chr5 116156540 116156822 -36380437 - ORR1D1 LTR MaLR -10 364 39 2 1471 246 313 88 57 chr5 116157233 116157392 -36379867 + MER5B DNA MER1_type 2 165 -13 2 1471 190 255 298 0 chr5 116157679 116157773 -36379486 - MIRb SINE MIR -8 260 139 2 1471 217 299 30 0 chr5 116157793 116157860 -36379399 + ID4 SINE ID 1 69 -14 2 1471 366 232 107 82 chr5 116157883 116158005 -36379254 - PB1D9 SINE Alu 0 127 3 2 1471 681 134 177 57 chr5 116158047 116158205 -36379054 - B2_Mm2 SINE B2 -18 177 1 2 1471 1200 71 0 0 chr5 116158422 116158577 -36378682 - B2_Mm2 SINE B2 -39 156 2 3 1471 472 226 68 25 chr5 116158783 116158901 -36378358 + B1F SINE Alu 18 140 -9 3 1471 196 338 0 0 chr5 116158914 116158982 -36378277 - L2c LINE L2 -230 3157 3090 3 1471 315 0 0 0 chr5 116159442 116159477 -36377782 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1471 414 0 0 0 chr5 116159477 116159522 -36377737 + (GA)n Simple_repeat Simple_repeat 2 47 0 3 1471 1184 224 47 45 chr5 116159550 116159909 -36377350 + Lx6 LINE L1 7085 7444 -16 3 1471 224 254 48 120 chr5 116160366 116160491 -36376768 + MIR3 SINE MIR 87 202 -6 3 1471 604 272 15 7 chr5 116160549 116160686 -36376573 - RSINE1 SINE B4 -22 143 6 3 1471 411 206 117 10 chr5 116160801 116160904 -36376355 + B1F2 SINE Alu 24 137 -12 3 1471 635 314 14 72 chr5 116161100 116161309 -36375950 + B3A SINE B2 1 197 -1 3 1471 207 305 215 25 chr5 116162271 116162392 -36374867 - MIRm SINE MIR -106 170 27 3 1471 779 191 214 0 chr5 116162493 116162666 -36374593 + B3 SINE B2 1 210 -6 3 1471 324 252 161 25 chr5 116162970 116163088 -36374171 + BC1_Mm scRNA scRNA 2 135 -17 3 1471 317 281 77 58 chr5 116163238 116163393 -36373866 + MLT1J1 LTR MaLR 38 195 -249 3 1471 238 222 73 100 chr5 116163473 116163583 -36373676 + RLTR19B LTR ERVK 50 156 -559 3 1471 1329 107 19 10 chr5 116164600 116164808 -36372451 - Lx2 LINE L1 0 6997 6788 3 1471 304 256 34 34 chr5 116165851 116165940 -36371319 - ID_B1 SINE B4 -133 91 3 3 1471 686 156 57 0 chr5 116166072 116166194 -36371065 - B1_Mur1 SINE Alu 0 149 21 3 1471 706 201 238 9 chr5 116166695 116166926 -36370333 - MTD LTR MaLR -34 385 102 3 1471 187 206 0 0 chr5 116167956 116167990 -36369269 - L3 LINE CR1 -592 3897 3864 3 1471 376 291 94 50 chr5 116168620 116168718 -36368541 + MLT1C LTR MaLR 5 114 -353 3 1471 928 219 45 5 chr5 116168718 116168920 -36368339 - B3 SINE B2 -5 211 2 3 1471 376 291 94 50 chr5 116168920 116168980 -36368279 + MLT1C LTR MaLR 115 170 -297 3 1471 1539 134 4 4 chr5 116169876 116170101 -36367158 - URR1B DNA MER1_type 0 225 1 3 1471 298 284 52 10 chr5 116170428 116170524 -36366735 + ID_B1 SINE B4 77 176 -48 3 1471 439 286 28 28 chr5 116170439 116170547 -36366712 + PB1D10 SINE Alu 8 115 -2 3 1471 21 36 0 0 chr5 116170588 116170616 -36366643 + AT_rich Low_complexity Low_complexity 1 28 0 3 1471 800 151 28 28 chr5 116170641 116170784 -36366475 - B1_Mus2 SINE Alu -2 145 3 3 1471 600 345 48 18 chr5 116170885 116171112 -36366147 - MIRb SINE MIR -9 259 26 3 1471 1038 283 72 42 chr5 116171314 116171812 -36365447 + L1MB7 LINE L1 5662 6174 -10 3 1471 691 196 0 74 chr5 116171926 116172075 -36365184 + B1_Mus1 SINE Alu 11 148 0 3 1471 790 160 173 16 chr5 116172550 116172741 -36364518 - URR1B DNA MER1_type 0 225 5 3 1471 227 242 91 0 chr5 116172826 116172892 -36364367 - MIRm SINE MIR -89 187 116 3 1471 976 151 0 0 chr5 116173793 116173939 -36363320 - B1_Mus1 SINE Alu 0 148 3 3 1471 269 288 0 22 chr5 116173939 116173968 -36363291 - ORR1B1-int LTR MaLR -861 648 623 3 1471 23 0 0 0 chr5 116174773 116174796 -36362463 + AT_rich Low_complexity Low_complexity 1 23 0 3 1471 195 217 109 0 chr5 116175358 116175404 -36361855 - L2a LINE L2 -94 3332 3282 3 1471 346 214 71 9 chr5 116175623 116175736 -36361523 + PB1D7 SINE Alu 1 120 0 3 1471 27 0 0 0 chr5 116175854 116175881 -36361378 + AT_rich Low_complexity Low_complexity 1 27 0 3 1471 1250 34 7 0 chr5 116176419 116176566 -36360693 + B1_Mus1 SINE Alu 1 148 0 3 1471 363 165 200 9 chr5 116177092 116177202 -36360057 + L1MC3 LINE L1 7491 7621 -164 3 1471 23 33 0 0 chr5 116177823 116177853 -36359406 + AT_rich Low_complexity Low_complexity 1 30 0 3 1471 830 57 0 9 chr5 116178184 116178291 -36358968 + B1_Mus1 SINE Alu 33 138 -10 3 1471 946 181 104 0 chr5 116178403 116178596 -36358663 + B3 SINE B2 4 216 0 3 1471 486 221 38 69 chr5 116178816 116178947 -36358312 + PB1 SINE Alu 1 127 0 3 1471 642 247 0 0 chr5 116178959 116179137 -36358122 + (TA)n Simple_repeat Simple_repeat 2 179 0 3 1471 329 229 0 24 chr5 116179166 116179251 -36358008 - L1MB2 LINE L1 -2 6169 6087 3 1471 229 179 26 0 chr5 116180414 116180453 -36356806 - RSINE1 SINE B4 -120 45 6 3 1471 28 61 0 0 chr5 116181568 116181617 -36355642 + GC_rich Low_complexity Low_complexity 1 49 0 3 1471 225 149 0 41 chr5 116181660 116181709 -36355550 + (CCGCG)n Simple_repeat Simple_repeat 5 51 0 3 1471 52 69 0 0 chr5 116181709 116181810 -36355449 + GC_rich Low_complexity Low_complexity 1 101 0 3 1471 207 186 0 0 chr5 116181957 116182000 -36355259 + (CCG)n Simple_repeat Simple_repeat 1 43 0 3 1471 207 190 0 0 chr5 116182107 116182165 -36355094 + (CGG)n Simple_repeat Simple_repeat 1 58 0 3 1471 237 214 9 80 chr5 116182209 116182321 -36354938 + (CCCG)n Simple_repeat Simple_repeat 2 105 0 3 1471 196 312 96 11 chr5 116183219 116183313 -36353946 - MIRb SINE MIR -45 223 122 3 1471 698 324 140 53 chr5 116183562 116184032 -36353227 - LTR84a LTR ERVL -29 728 218 3 1471 222 255 43 0 chr5 116184216 116184263 -36352996 - B4A SINE B4 -145 147 99 3 1471 992 255 95 131 chr5 116184348 116184728 -36352531 - Charlie1a DNA MER1_type -1 1454 1101 3 1471 691 271 53 6 chr5 116184728 116184899 -36352360 - B3A SINE B2 -16 182 4 3 1471 992 255 95 131 chr5 116184899 116184992 -36352267 - Charlie1a DNA MER1_type -355 1100 1022 3 1471 1073 115 0 0 chr5 116184992 116185140 -36352119 - B1_Mus1 SINE Alu 0 148 1 3 1471 992 255 95 131 chr5 116185140 116185414 -36351845 - Charlie1a DNA MER1_type -434 1021 733 3 1471 539 252 0 0 chr5 116185435 116185542 -36351717 + B1F SINE Alu 36 142 -7 3 1471 786 305 142 70 chr5 116185556 116186045 -36351214 - Charlie1a DNA MER1_type -738 717 193 3 1471 233 302 0 59 chr5 116186045 116186147 -36351112 + MLT1A1 LTR MaLR 1 96 -312 3 1471 807 142 0 0 chr5 116186321 116186455 -36350804 + (TTTC)n Simple_repeat Simple_repeat 3 136 0 3 1471 1207 41 0 20 chr5 116186457 116186606 -36350653 - B1_Mus1 SINE Alu -2 146 1 3 1471 316 83 375 10 chr5 116186661 116186757 -36350502 - B2_Mm2 SINE B2 -1 194 64 3 1471 784 134 59 0 chr5 116186807 116186926 -36350333 - B2_Mm2 SINE B2 -68 127 2 3 1471 183 80 0 0 chr5 116186945 116186970 -36350289 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1471 2162 182 49 78 chr5 116186986 116187521 -36349738 + RLTR11A LTR ERVK 7 525 -3 3 1471 300 317 39 90 chr5 116187521 116187661 -36349598 - Charlie1a DNA MER1_type -1219 236 105 3 1471 225 270 0 63 chr5 116187983 116188070 -36349189 - MIRb SINE MIR -42 226 143 3 1471 878 251 14 6 chr5 116188164 116188375 -36348884 - B3A SINE B2 -2 214 1 3 1471 225 0 0 0 chr5 116188756 116188781 -36348478 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 1471 996 25 0 0 chr5 116189045 116189164 -36348095 - B1_Mm SINE Alu 0 147 29 3 1471 293 238 16 0 chr5 116189385 116189448 -36347811 + B1_Mur2 SINE Alu 29 92 -57 3 1471 258 0 71 0 chr5 116190556 116190598 -36346661 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1471 474 193 0 0 chr5 116190678 116190745 -36346514 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1471 3099 40 42 5 chr5 116190745 116191127 -36346132 - MTA_Mm LTR MaLR 0 396 1 3 1471 474 193 0 0 chr5 116191127 116191173 -36346086 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1471 29 28 0 0 chr5 116191734 116191770 -36345489 + AT_rich Low_complexity Low_complexity 1 36 0 3 1471 854 163 0 0 chr5 116191785 116191926 -36345333 - B1_Mur4 SINE Alu 0 150 10 3 1471 1530 43 11 0 chr5 116191944 116192129 -36345130 - B2_Mm1t SINE B2 -6 187 1 3 1471 1007 135 45 0 chr5 116192139 116192295 -36344964 - B2_Mm2 SINE B2 -7 188 26 3 1471 1178 73 85 0 chr5 116192299 116192464 -36344795 + B2_Mm1t SINE B2 1 179 -14 3 1471 294 119 365 0 chr5 116192511 116192618 -36344641 + B2_Mm2 SINE B2 47 192 -3 3 1471 250 184 20 0 chr5 116192602 116192651 -36344608 - B3A SINE B2 -148 50 1 3 1471 1333 58 11 11 chr5 116192877 116193052 -36344207 - B2_Mm2 SINE B2 -20 175 1 3 1471 512 287 31 83 chr5 116193073 116193260 -36343999 - B3 SINE B2 0 216 39 3 1471 936 121 170 0 chr5 116193260 116193425 -36343834 - B2_Mm1a SINE B2 0 193 1 3 1471 512 287 31 83 chr5 116193425 116193465 -36343794 - B3 SINE B2 -178 38 1 3 1471 193 346 37 28 chr5 116193499 116193606 -36343653 + MIR SINE MIR 8 115 -147 3 1471 1329 100 10 10 chr5 116194061 116194253 -36343006 + B2_Mm1t SINE B2 1 192 -1 3 1471 1217 48 0 0 chr5 116194254 116194399 -36342860 + B1_Mm SINE Alu 1 145 -2 3 1471 201 74 0 0 chr5 116194399 116194426 -36342833 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1471 589 301 9 67 chr5 116194499 116194709 -36342550 + B3A SINE B2 1 198 0 3 1471 1004 88 65 7 chr5 116196084 116196222 -36341037 + B1_Mus1 SINE Alu 3 148 0 3 1471 329 62 21 0 chr5 116196242 116196290 -36340969 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1471 392 256 24 0 chr5 116196310 116196392 -36340867 - RSINE1 SINE B4 -30 135 52 3 1471 22 35 0 0 chr5 116196418 116196447 -36340812 + AT_rich Low_complexity Low_complexity 1 29 0 3 1471 288 0 0 0 chr5 116196448 116196480 -36340779 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1471 626 229 171 0 chr5 116196511 116196681 -36340578 - B3 SINE B2 -17 199 1 3 1471 276 303 37 55 chr5 116196703 116196867 -36340392 - L1MB1 LINE L1 -193 5975 5815 3 1471 797 157 317 11 chr5 116196896 116197076 -36340183 + RMER19B LTR ERVK 1 235 -667 3 1471 2211 151 97 21 chr5 116197090 116197524 -36339735 - RLTR16 LTR ERVK -38 467 1 3 1471 1722 157 80 16 chr5 116197534 116197844 -36339415 + RMER19B LTR ERVK 227 556 -346 3 1471 1239 235 46 106 chr5 116197844 116198325 -36338934 - RLTR11A LTR ERVK -2 526 75 4 1471 2279 126 23 0 chr5 116198403 116198745 -36338514 + RMER19B LTR ERVK 553 902 0 3 1471 30 0 0 0 chr5 116198745 116198775 -36338484 + AT_rich Low_complexity Low_complexity 1 30 0 4 1471 827 166 123 55 chr5 116198776 116199012 -36338247 - Lx9 LINE L1 -2 7642 7391 4 1471 508 243 10 0 chr5 116199017 116199120 -36338139 - PB1D9 SINE Alu -6 114 11 4 1471 424 231 83 216 chr5 116199120 116199267 -36337992 - B4 SINE B4 -68 220 5 4 1471 338 103 15 50 chr5 116199362 116199429 -36337830 - B2_Mm2 SINE B2 -107 109 47 4 1471 1213 114 11 0 chr5 116199481 116199657 -36337602 - B2_Mm1t SINE B2 -14 179 2 4 1471 215 298 75 106 chr5 116199730 116199760 -36337499 - B2_Mm1t SINE B2 -9 184 3 4 1471 645 276 13 13 chr5 116199760 116199918 -36337341 - RSINE1 SINE B4 -4 161 4 4 1471 368 340 81 81 chr5 116199955 116200339 -36336920 + MLT2B3 LTR ERVL 1 384 -170 4 1471 224 327 67 91 chr5 116200274 116200361 -36336898 - B4A SINE B4 -131 161 1 4 1471 520 128 0 0 chr5 116200361 116200439 -36336820 - B2_Mm2 SINE B2 -117 78 1 4 1471 2258 154 13 3 chr5 116200481 116200858 -36336401 - RMER4A LTR ERVK -85 381 1 4 1471 995 82 0 120 chr5 116201075 116201233 -36336026 + B1_Mus1 SINE Alu 2 140 -8 4 1471 693 0 0 0 chr5 116201237 116201314 -36335945 + (GAA)n Simple_repeat Simple_repeat 2 78 0 4 1471 234 0 0 0 chr5 116201441 116201467 -36335792 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 4 1471 1167 68 0 14 chr5 116201472 116201620 -36335639 - B1_Mus1 SINE Alu -1 147 2 4 1471 748 239 6 35 chr5 116201750 116201923 -36335336 + B3 SINE B2 1 168 -48 4 1471 442 246 9 52 chr5 116201894 116201950 -36335309 + RMER13B LTR ERVK 798 852 -56 4 1471 1740 158 203 8 chr5 116201950 116202314 -36334945 - RLTR10C LTR ERVK -1 435 1 4 1471 442 246 9 52 chr5 116202314 116202373 -36334886 + RMER13B LTR ERVK 853 908 0 4 1471 319 271 87 32 chr5 116202484 116202610 -36334649 + RSINE1 SINE B4 4 136 -29 4 1471 722 268 12 12 chr5 116202695 116202861 -36334398 + B3A SINE B2 2 167 -31 4 1471 378 0 0 0 chr5 116203192 116203234 -36334025 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1471 3771 30 2 5 chr5 116203429 116203871 -36333388 + L1Md_F2 LINE L1 6130 6570 -12 4 1471 24 0 0 0 chr5 116203933 116203957 -36333302 + AT_rich Low_complexity Low_complexity 1 24 0 4 1471 417 274 88 15 chr5 116204086 116204223 -36333036 + B1F2 SINE Alu 1 147 -2 4 1471 234 0 0 0 chr5 116204227 116204253 -36333006 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1471 459 248 33 75 chr5 116204290 116204450 -36332809 + L1M2 LINE L1 4019 4174 -1972 4 1471 781 206 14 0 chr5 116204450 116204596 -36332663 + B1_Mur4 SINE Alu 3 150 0 4 1471 402 291 35 7 chr5 116204596 116204617 -36332642 + L1M2 LINE L1 4175 4196 -1950 4 1471 336 102 0 0 chr5 116204617 116204666 -36332593 + (GAAA)n Simple_repeat Simple_repeat 1 49 0 4 1471 362 279 0 31 chr5 116204690 116204786 -36332473 + PB1D10 SINE Alu 1 93 -24 4 1471 227 167 0 0 chr5 116205203 116205245 -36332014 + BGLII_A LTR ERVK 1 42 -403 4 1471 2334 152 41 7 chr5 116205250 116205668 -36331591 + RLTR11A LTR ERVK 97 528 0 4 1471 198 91 0 0 chr5 116205823 116205856 -36331403 + (C)n Simple_repeat Simple_repeat 1 33 0 4 1471 987 37 96 15 chr5 116206003 116206139 -36331120 + B1_Mur4 SINE Alu 1 147 -3 4 1471 2819 126 52 27 chr5 116206160 116206640 -36330619 - RLTR19 LTR ERVK 0 499 8 4 1471 427 214 0 0 chr5 116206652 116206722 -36330537 + ID4 SINE ID 12 81 -2 4 1471 269 259 162 21 chr5 116206724 116206866 -36330393 + L1_Rod LINE L1 5421 5582 -265 4 1471 405 0 0 0 chr5 116206982 116207027 -36330232 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1471 361 201 17 61 chr5 116207122 116207302 -36329957 + GA-rich Low_complexity Low_complexity 4 175 0 4 1471 1374 221 74 20 chr5 116207447 116207797 -36329462 - ORR1D2 LTR MaLR 0 370 2 4 1471 1324 85 23 0 chr5 116207898 116208074 -36329185 + B2_Mm2 SINE B2 1 180 -15 4 1471 1164 55 7 0 chr5 116208074 116208220 -36329039 + B1_Mus1 SINE Alu 2 148 0 4 1471 183 42 0 0 chr5 116208235 116208259 -36329000 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4 1471 180 97 0 0 chr5 116208271 116208302 -36328957 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 4 1471 1173 143 72 0 chr5 116209299 116209508 -36327751 + URR1B DNA MER1_type 1 224 -1 4 1471 602 89 0 11 chr5 116209727 116209818 -36327441 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 4 1471 1468 88 0 5 chr5 116209818 116210012 -36327247 - B2_Mm2 SINE B2 0 195 3 4 1471 241 339 30 86 chr5 116210053 116210087 -36327172 - B2_Mm1a SINE B2 -6 187 2 4 1471 717 273 0 12 chr5 116210087 116210250 -36327009 - RSINE1 SINE B4 -2 163 3 4 1471 1099 95 7 0 chr5 116210270 116210417 -36326842 - B1_Mus1 SINE Alu 0 148 1 4 1471 780 251 18 120 chr5 116211000 116211276 -36325983 + RMER15 LTR ERVL 299 546 -29 4 1471 498 280 201 10 chr5 116211848 116212057 -36325202 - MT2A LTR ERVL -13 520 272 4 1471 352 321 90 0 chr5 116212094 116212228 -36325031 - L2a LINE L2 -18 3408 3263 4 1471 978 118 0 0 chr5 116213180 116213332 -36323927 + (TTC)n Simple_repeat Simple_repeat 1 152 0 4 1471 198 71 0 0 chr5 116213332 116213360 -36323899 + (TCCCC)n Simple_repeat Simple_repeat 1 28 0 4 1471 1341 72 0 62 chr5 116213384 116213577 -36323682 - B2_Mm2 SINE B2 -13 182 2 4 1471 526 259 35 53 chr5 116213747 116213803 -36323456 + MER53 DNA hAT 6 62 -131 4 1471 1820 83 186 7 chr5 116213803 116214082 -36323177 - ORR1A4 LTR MaLR 0 329 1 4 1471 526 259 35 53 chr5 116214082 116214196 -36323063 + MER53 DNA hAT 63 173 -20 4 1471 288 26 26 0 chr5 116214282 116214321 -36322938 - B1_Mm SINE Alu 0 147 108 4 1471 265 47 23 23 chr5 116214400 116214444 -36322815 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1471 384 59 0 0 chr5 116214444 116214495 -36322764 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1471 199 79 26 26 chr5 116214619 116214658 -36322601 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1471 740 260 20 10 chr5 116214667 116214865 -36322394 - B3 SINE B2 -16 200 1 4 1471 1039 90 86 7 chr5 116214870 116215044 -36322215 - B2_Mm1t SINE B2 -12 181 1 4 1471 863 287 96 0 chr5 116215483 116215744 -36321515 + B4 SINE B4 7 292 0 4 1471 237 213 0 0 chr5 116215768 116215815 -36321444 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1471 225 108 0 0 chr5 116215911 116215948 -36321311 + (A)n Simple_repeat Simple_repeat 1 37 0 4 1471 974 147 0 0 chr5 116215953 116216096 -36321163 + B1_Mus1 SINE Alu 1 143 -5 4 1471 929 123 0 6 chr5 116216112 116216292 -36320967 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 4 1471 1577 27 27 0 chr5 116216318 116216505 -36320754 - B2_Mm1t SINE B2 -1 192 1 4 1471 186 43 0 0 chr5 116216718 116216741 -36320518 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1471 228 228 0 102 chr5 116217302 116217390 -36319869 + MER33 DNA MER1_type 139 217 -107 4 1471 421 212 81 81 chr5 116217390 116217539 -36319720 - L1MB5 LINE L1 -97 6077 5929 4 1471 636 288 75 0 chr5 116217563 116217709 -36319550 + RSINE1 SINE B4 1 157 -8 4 1471 387 0 0 0 chr5 116217713 116217756 -36319503 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1471 228 100 0 0 chr5 116217756 116217796 -36319463 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1471 1231 61 0 0 chr5 116217798 116217945 -36319314 - B1_Mus1 SINE Alu 0 148 2 4 1471 1339 85 11 0 chr5 116217945 116218121 -36319138 - B2_Mm1t SINE B2 -15 178 1 4 1471 556 217 65 12 chr5 116218124 116218292 -36318967 + MER33 DNA MER1_type 148 324 0 4 1471 699 233 13 20 chr5 116218344 116218493 -36318766 + B1_Mur2 SINE Alu 2 149 0 4 1471 23 33 0 0 chr5 116218580 116218610 -36318649 + AT_rich Low_complexity Low_complexity 1 30 0 4 1471 480 35 0 0 chr5 116218630 116218688 -36318571 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1471 183 114 0 0 chr5 116218688 116218723 -36318536 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1471 377 217 42 25 chr5 116218726 116218846 -36318413 - B3 SINE B2 -57 159 42 4 1471 750 192 13 33 chr5 116218857 116219008 -36318251 + B1_Mus1 SINE Alu 1 148 0 4 1471 1566 52 5 0 chr5 116219625 116219817 -36317442 - B2_Mm2 SINE B2 -1 194 2 4 1471 1505 197 122 15 chr5 116220177 116220512 -36316747 + ORR1C1 LTR MaLR 5 375 -3 4 1471 250 211 0 55 chr5 116220609 116220664 -36316595 + MTEb LTR MaLR 87 138 -221 4 1471 1400 272 104 18 chr5 116220780 116221271 -36315988 - RLTR20A2 LTR ERVK 0 578 46 4 1471 285 310 0 12 chr5 116221302 116221387 -36315872 + MTEb LTR MaLR 280 363 -16 4 1471 227 260 20 0 chr5 116221400 116221450 -36315809 - LTR16C LTR ERVL -259 230 180 4 1471 219 36 0 0 chr5 116221798 116221826 -36315433 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 4 1471 377 117 139 43 chr5 116221915 116222025 -36315234 - B1_Mur4 SINE Alu 0 147 65 4 1471 278 212 20 226 chr5 116221921 116222067 -36315192 - ID_B1 SINE B4 0 224 109 4 1471 1128 88 0 0 chr5 116222709 116222856 -36314403 - B1_Mus2 SINE Alu 0 147 1 4 1471 1428 67 5 25 chr5 116222866 116223064 -36314195 - B2_Mm2 SINE B2 -1 194 1 4 1471 2678 179 54 30 chr5 116223089 116223648 -36313611 - RMER15 LTR ERVL 0 575 4 4 1471 519 255 80 80 chr5 116223712 116223887 -36313372 + MTEa LTR MaLR 5 179 -200 4 1471 797 211 166 6 chr5 116223904 116224056 -36313203 + B3 SINE B2 1 182 -34 4 1471 638 82 21 0 chr5 116224056 116224153 -36313106 + (CATA)n Simple_repeat Simple_repeat 4 102 0 4 1471 797 211 166 6 chr5 116224153 116224181 -36313078 + B3 SINE B2 183 210 -6 4 1471 1798 127 158 45 chr5 116224206 116224560 -36312699 - ORR1B1 LTR MaLR 0 394 1 4 1471 420 228 83 70 chr5 116224560 116224716 -36312543 - Lx9 LINE L1 -462 7182 7025 5 1471 431 260 31 10 chr5 116224716 116224813 -36312446 - RLTR20D LTR ERVK -4 564 466 5 1471 384 22 0 0 chr5 116224816 116224861 -36312398 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1471 961 159 153 0 chr5 116224863 116225033 -36312226 - B3 SINE B2 -12 204 9 5 1471 258 32 0 0 chr5 116225057 116225088 -36312171 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 1471 219 188 0 0 chr5 116225088 116225136 -36312123 + CT-rich Low_complexity Low_complexity 4 51 0 5 1471 188 283 125 42 chr5 116225441 116225537 -36311722 + MIR SINE MIR 16 119 -89 5 1471 184 336 55 27 chr5 116225888 116225998 -36311261 + MIRc SINE MIR 101 213 -55 5 1471 510 289 128 85 chr5 116226052 116226404 -36310855 - MTE2a LTR MaLR 0 379 13 5 1471 1332 90 17 0 chr5 116226415 116226592 -36310667 + B2_Mm2 SINE B2 2 181 -14 5 1471 1286 60 95 0 chr5 116226592 116226760 -36310499 - B2_Mm2 SINE B2 -10 185 2 5 1471 484 249 168 96 chr5 116227174 116227383 -36309876 + B4A SINE B4 55 278 -14 5 1471 207 0 0 0 chr5 116227384 116227407 -36309852 + (CATG)n Simple_repeat Simple_repeat 1 23 0 5 1471 437 245 0 249 chr5 116228110 116228210 -36309049 + RSINE1 SINE B4 3 70 -95 5 1471 926 133 0 22 chr5 116228210 116228348 -36308911 - B1_Mur4 SINE Alu -13 137 3 5 1471 437 245 0 249 chr5 116228348 116228464 -36308795 + RSINE1 SINE B4 71 165 0 5 1471 255 273 114 0 chr5 116228487 116228575 -36308684 - MLT1A1 LTR MaLR -29 379 282 5 1471 224 208 93 19 chr5 116228718 116228772 -36308487 + L4 LINE RTE 1457 1514 -515 5 1471 376 282 144 65 chr5 116229076 116229277 -36307982 + MER20 DNA MER1_type 3 219 0 5 1471 762 246 25 50 chr5 116229310 116229331 -36307928 - B3A SINE B2 0 198 181 5 1471 246 95 0 0 chr5 116229331 116229373 -36307886 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1471 762 246 25 50 chr5 116229373 116229552 -36307707 - B3A SINE B2 -18 180 4 5 1471 4263 135 92 0 chr5 116229868 116230543 -36306716 + RMER19A LTR ERVK 1 737 0 5 1471 420 177 115 0 chr5 116230547 116230643 -36306616 - MT2A LTR ERVL 0 533 427 5 1471 847 237 132 0 chr5 116230642 116230861 -36306398 - MT2A LTR ERVL -283 250 3 5 1471 1956 134 143 3 chr5 116230902 116231245 -36306014 - MTC LTR MaLR 0 421 31 5 1471 246 146 40 40 chr5 116231373 116231423 -36305836 - ORR1E LTR MaLR -9 350 301 5 1471 745 115 15 15 chr5 116231424 116231556 -36305703 + (TTTC)n Simple_repeat Simple_repeat 2 133 0 5 1471 5570 114 6 37 chr5 116231636 116232310 -36304949 + RLTR22_Mur LTR ERVK 1 661 -1187 5 1471 4800 94 3 5 chr5 116232310 116232963 -36304296 - L1_Mus1 LINE L1 0 6567 5916 5 1471 5570 114 6 37 chr5 116232963 116233171 -36304088 + RLTR22_Mur LTR ERVK 662 855 -993 5 1471 625 294 36 45 chr5 116233349 116233573 -36303686 + RMER12 LTR ERVK 1101 1322 0 5 1471 248 125 0 59 chr5 116233615 116233683 -36303576 + CT-rich Low_complexity Low_complexity 1 64 0 5 1471 766 220 0 34 chr5 116233683 116233829 -36303430 - B1_Mur2 SINE Alu -8 141 1 5 1471 392 310 20 65 chr5 116233829 116234029 -36303230 - ORR1E LTR MaLR -147 212 22 5 1471 622 280 46 21 chr5 116234051 116234256 -36303003 + B3A SINE B2 4 215 -1 5 1471 261 122 0 24 chr5 116234276 116234318 -36302941 - MTEb LTR MaLR -61 318 278 5 1471 321 152 0 0 chr5 116234325 116234371 -36302888 - PB1D7 SINE Alu -74 46 1 5 1471 739 164 0 103 chr5 116234424 116234580 -36302679 + B3A SINE B2 2 141 -57 5 1471 372 22 0 0 chr5 116234587 116234632 -36302627 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1471 1748 120 125 7 chr5 116234925 116235230 -36302029 + ORR1B2 LTR MaLR 1 306 -61 5 1471 887 126 22 22 chr5 116235232 116235356 -36301903 + B1_Mus1 SINE Alu 1 138 -10 5 1471 382 222 0 40 chr5 116235356 116235370 -36301889 + ORR1B2 LTR MaLR 258 269 -60 5 1471 216 0 0 0 chr5 116235370 116235394 -36301865 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1471 382 222 0 40 chr5 116235394 116235454 -36301805 + ORR1B2 LTR MaLR 270 329 0 5 1471 2386 131 43 0 chr5 116235454 116235829 -36301430 + MTC LTR MaLR 30 420 -1 5 1471 374 280 7 132 chr5 116235831 116235983 -36301276 - B4A SINE B4 -127 165 33 5 1471 21103 45 46 34 chr5 116235992 116238115 -36299144 + RLTR44-int LTR ERVK 1 2149 -663 5 1471 1686 16 0 20 chr5 116238115 116238311 -36298948 - B2_Mm1a SINE B2 -1 192 1 5 1471 21103 45 46 34 chr5 116238311 116238966 -36298293 + RLTR44-int LTR ERVK 2150 2812 0 5 1471 2712 86 91 0 chr5 116238966 116239362 -36297897 + RLTR44E LTR ERVK 1 432 -20 5 1471 1111 95 0 0 chr5 116239416 116239563 -36297696 - B1_Mus1 SINE Alu -1 147 1 5 1471 616 270 44 10 chr5 116239738 116239944 -36297315 - B3 SINE B2 -3 213 1 5 1471 642 287 7 0 chr5 116240028 116240171 -36297088 - RSINE1 SINE B4 -15 150 7 5 1471 212 167 21 0 chr5 116240174 116240222 -36297037 + CT-rich Low_complexity Low_complexity 5 53 0 5 1471 227 256 75 18 chr5 116240388 116240481 -36296778 + MIR SINE MIR 118 209 -59 5 1471 705 194 63 24 chr5 116241105 116241232 -36296027 - B1_Mur2 SINE Alu -13 136 5 5 1471 317 350 94 31 chr5 116241129 116241256 -36296003 - B4 SINE B4 -88 204 70 5 1471 191 308 127 27 chr5 116241307 116241417 -36295842 - L2c LINE L2 -216 3171 3051 5 1471 2169 118 82 3 chr5 116241814 116242154 -36295105 + ORR1B2 LTR MaLR 1 367 0 5 1471 932 283 90 24 chr5 116242172 116242547 -36294712 + Charlie4a DNA MER1_type 23 422 -86 5 1471 1252 170 46 0 chr5 116242547 116242765 -36294494 + RMER6C LTR ERVK 1 228 -462 5 1471 1298 127 10 10 chr5 116242810 116243017 -36294242 + RMER6C LTR ERVK 484 690 0 5 1471 1391 89 5 16 chr5 116243039 116243233 -36294026 + B2_Mm1a SINE B2 2 193 0 5 1471 2466 112 3 75 chr5 116243342 116243729 -36293530 - RLTR10D LTR ERVK 0 359 1 5 1471 403 274 77 41 chr5 116243734 116243845 -36293414 - ORSL DNA Tip100 -7 268 159 5 1471 646 212 0 0 chr5 116243845 116243963 -36293296 + PB1D9 SINE Alu 1 118 -2 5 1471 403 274 77 41 chr5 116243963 116244045 -36293214 - ORSL DNA Tip100 -117 158 68 5 1471 211 139 23 0 chr5 116244115 116244158 -36293101 + (TCTG)n Simple_repeat Simple_repeat 3 46 0 5 1471 462 255 39 96 chr5 116244235 116244391 -36292868 - B1F SINE Alu -1 148 2 5 1471 1300 82 35 0 chr5 116244872 116245043 -36292216 + B2_Mm1t SINE B2 3 179 -14 5 1471 362 169 0 83 chr5 116245117 116245201 -36292058 + B2_Mm2 SINE B2 49 125 -70 5 1471 2994 121 64 135 chr5 116245171 116245860 -36291399 + MT-int LTR MaLR 384 1023 -75 5 1471 256 39 0 19 chr5 116245859 116245911 -36291348 + B2_Mm2 SINE B2 144 194 -1 5 1471 2375 138 166 5 chr5 116246274 116246709 -36290550 - RLTR16 LTR ERVK 0 505 1 5 1471 457 324 45 84 chr5 116246795 116246997 -36290262 + MTEb LTR MaLR 3 196 -183 5 1471 906 241 33 203 chr5 116246998 116247451 -36289808 + MTE2a LTR MaLR 4 379 0 5 1471 471 237 181 23 chr5 116247451 116247607 -36289652 + MTEb LTR MaLR 192 375 -4 5 1471 405 232 21 0 chr5 116247817 116247959 -36289300 + (TG)n Simple_repeat Simple_repeat 1 145 0 5 1471 258 32 0 0 chr5 116248022 116248053 -36289206 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1471 982 77 69 0 chr5 116248053 116248183 -36289076 - B1_Mus1 SINE Alu -8 140 2 5 1471 458 243 149 37 chr5 116248399 116248587 -36288672 + B3 SINE B2 3 211 -5 5 1471 224 361 40 32 chr5 116248647 116248773 -36288486 + MER5A DNA MER1_type 58 184 -5 5 1471 342 0 0 0 chr5 116248853 116248891 -36288368 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1471 216 67 0 0 chr5 116248891 116248920 -36288339 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1471 242 0 61 0 chr5 116248931 116248964 -36288295 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 5 1471 270 0 0 0 chr5 116249190 116249220 -36288039 + (A)n Simple_repeat Simple_repeat 1 30 0 5 1471 353 22 0 21 chr5 116249866 116249913 -36287346 + (TC)n Simple_repeat Simple_repeat 1 46 0 5 1471 738 207 0 0 chr5 116250214 116250383 -36286876 + (TGGA)n Simple_repeat Simple_repeat 3 171 0 5 1471 220 279 0 0 chr5 116250386 116250447 -36286812 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 5 1471 262 299 38 45 chr5 116250699 116250832 -36286427 - MER5A DNA MER1_type 0 189 58 5 1471 1091 167 55 20 chr5 116250871 116250924 -36286335 - B2_Mm1t SINE B2 -2 214 159 5 1471 405 0 0 0 chr5 116250924 116250969 -36286290 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 5 1471 1272 39 20 0 chr5 116250969 116251122 -36286137 - B2_Mm2 SINE B2 -38 157 2 5 1471 1124 82 0 0 chr5 116251159 116251305 -36285954 - B1_Mus1 SINE Alu 0 148 3 5 1471 21 36 0 0 chr5 116251310 116251338 -36285921 + AT_rich Low_complexity Low_complexity 1 28 0 5 1471 759 206 27 64 chr5 116251356 116251543 -36285716 - B3A SINE B2 -17 181 2 5 1471 26 0 0 0 chr5 116251543 116251569 -36285690 + AT_rich Low_complexity Low_complexity 1 26 0 5 1471 198 0 0 0 chr5 116252233 116252255 -36285004 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 5 1471 1237 34 0 20 chr5 116252261 116252411 -36284848 - B1_Mus1 SINE Alu -1 147 1 5 1471 584 245 5 88 chr5 116252415 116252630 -36284629 - B3A SINE B2 0 198 2 5 1471 5016 82 65 4 chr5 116252779 116253474 -36283785 + RMER19A LTR ERVK 1 737 0 5 1471 367 221 26 13 chr5 116253585 116253663 -36283596 + MER20 DNA MER1_type 141 219 0 5 1471 380 216 11 54 chr5 116253974 116254067 -36283192 + PB1D10 SINE Alu 1 89 -28 5 1471 575 265 22 15 chr5 116253985 116254119 -36283140 + ID_B1 SINE B4 90 224 0 5 1471 284 0 28 0 chr5 116254128 116254164 -36283095 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 5 1471 1098 80 24 158 chr5 116254172 116254315 -36282944 + B2_Mm2 SINE B2 2 139 -56 5 1471 1009 47 63 0 chr5 116254315 116254442 -36282817 + B1_Mus1 SINE Alu 1 135 -13 5 1471 1098 80 24 158 chr5 116254442 116254507 -36282752 + B2_Mm2 SINE B2 140 182 -13 5 1471 266 79 0 0 chr5 116254546 116254584 -36282675 + B2_Mm2 SINE B2 64 101 -94 5 1471 503 285 86 32 chr5 116254610 116254624 -36282635 + L1M5 LINE L1 5265 5284 -840 5 1471 1231 68 0 0 chr5 116254624 116254771 -36282488 + B1_Mus2 SINE Alu 1 147 0 5 1471 503 285 86 32 chr5 116254771 116254977 -36282282 + L1M5 LINE L1 5285 5496 -628 5 1471 1551 240 80 37 chr5 116254977 116255379 -36281880 + MTD LTR MaLR 1 419 0 5 1471 589 332 51 64 chr5 116255675 116255971 -36281288 + B4A SINE B4 1 292 0 5 1471 307 170 0 19 chr5 116256013 116256067 -36281192 + HAL1-3A_ME LINE L1 1975 2027 -831 6 1471 467 240 19 14 chr5 116256068 116256665 -36280594 + (CA)n Simple_repeat Simple_repeat 1 599 0 6 1471 282 211 26 0 chr5 116256691 116256805 -36280454 + (CA)n Simple_repeat Simple_repeat 1 117 0 6 1471 25 51 0 0 chr5 116257367 116257406 -36279853 + AT_rich Low_complexity Low_complexity 1 39 0 6 1471 252 258 65 0 chr5 116257409 116257564 -36279695 + (TA)n Simple_repeat Simple_repeat 2 166 0 6 1471 793 206 140 5 chr5 116257777 116257977 -36279282 - MTD LTR MaLR -14 405 179 6 1471 393 58 0 0 chr5 116258018 116258070 -36279189 + (TTCA)n Simple_repeat Simple_repeat 4 55 0 6 1471 655 273 0 26 chr5 116258106 116258260 -36278999 + B3A SINE B2 2 151 -47 6 1471 1383 96 11 0 chr5 116258283 116258471 -36278788 + B2_Mm1t SINE B2 4 193 0 6 1471 546 16 0 0 chr5 116258669 116258732 -36278527 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1471 208 342 0 0 chr5 116258803 116258879 -36278380 + G-rich Low_complexity Low_complexity 1 76 0 6 1471 269 301 27 75 chr5 116258902 116259049 -36278210 + LTR16A LTR ERVL 27 166 -285 6 1471 260 312 0 79 chr5 116259119 116259258 -36278001 + LTR16A LTR ERVL 324 451 0 6 1471 747 105 0 19 chr5 116259357 116259464 -36277795 - B1_Mus2 SINE Alu -1 146 42 6 1471 226 221 69 59 chr5 116259407 116259508 -36277751 - RLTR25B LTR ERVK -530 498 397 6 1471 395 0 0 162 chr5 116259509 116260726 -36276533 + (CTCTG)n Simple_repeat Simple_repeat 1 1019 0 6 1471 401 68 0 33 chr5 116260728 116260789 -36276470 - B1_Mus2 SINE Alu -88 59 1 6 1471 380 147 40 0 chr5 116260789 116260801 -36276458 - ID_B1 SINE B4 -77 145 70 6 1472 481 220 0 114 chr5 116260879 116261002 -36276257 - MTD LTR MaLR -248 111 3 6 1472 756 194 0 29 chr5 116261625 116261763 -36275496 - B1_Mus1 SINE Alu -13 135 2 6 1472 276 167 0 0 chr5 116261834 116261906 -36275353 + CT-rich Low_complexity Low_complexity 2 73 0 6 1472 698 309 146 46 chr5 116261913 116262174 -36275085 - B4A SINE B4 -4 288 2 6 1472 450 0 0 0 chr5 116262367 116262417 -36274842 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1472 1093 128 11 48 chr5 116262785 116262973 -36274286 - B2_Mm2 SINE B2 -14 181 1 6 1472 1945 138 58 111 chr5 116263111 116263527 -36273732 + ORR1B1 LTR MaLR 1 394 0 6 1472 1200 41 0 20 chr5 116263860 116264010 -36273249 - B1_Mm SINE Alu 0 147 1 6 1472 369 109 0 0 chr5 116264317 116264372 -36272887 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 6 1472 444 242 56 33 chr5 116264401 116264535 -36272724 + B3A SINE B2 84 214 -2 6 1472 513 236 0 0 chr5 116264544 116264650 -36272609 + PB1D9 SINE Alu 3 108 -12 6 1472 272 295 135 32 chr5 116264650 116264667 -36272592 + B4A SINE B4 88 223 -69 6 1472 658 296 78 43 chr5 116264674 116264956 -36272303 - B4 SINE B4 0 292 1 6 1472 285 301 118 15 chr5 116265239 116265374 -36271885 + MLT1H2 LTR MaLR 313 461 -28 6 1472 450 94 0 0 chr5 116265828 116265892 -36271367 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1472 200 176 0 0 chr5 116265971 116266005 -36271254 + C-rich Low_complexity Low_complexity 1 34 0 6 1472 567 305 33 22 chr5 116266123 116266304 -36270955 + MER20 DNA MER1_type 1 183 -36 6 1472 767 242 121 49 chr5 116266480 116266745 -36270514 - B4A SINE B4 -8 284 1 6 1472 823 220 10 51 chr5 116266985 116267181 -36270078 + B3A SINE B2 3 190 -8 6 1472 323 308 96 34 chr5 116267183 116267535 -36269724 + L1MB7 LINE L1 5733 6114 -70 6 1472 564 259 23 98 chr5 116267539 116267753 -36269506 + B3A SINE B2 1 198 0 6 1472 1444 55 0 16 chr5 116267796 116267980 -36269279 + B2_Mm2 SINE B2 1 181 -14 6 1472 1230 48 0 0 chr5 116268074 116268221 -36269038 + B1_Mus1 SINE Alu 2 148 0 6 1472 209 113 0 54 chr5 116268221 116268277 -36268982 + A-rich Low_complexity Low_complexity 1 53 0 6 1472 278 233 61 23 chr5 116268332 116268357 -36268902 + ORR1B1-int LTR MaLR 617 646 -863 6 1472 762 179 64 0 chr5 116268357 116268497 -36268762 + B1_Mur1 SINE Alu 1 149 0 6 1472 373 245 0 16 chr5 116268537 116268628 -36268631 - ID4 SINE ID -53 99 12 6 1472 254 221 36 83 chr5 116268555 116268639 -36268620 - B4 SINE B4 -205 87 8 6 1472 1616 145 41 105 chr5 116268747 116269185 -36268074 - RMER17C LTR ERVK 0 410 1 6 1472 194 247 120 27 chr5 116269595 116269670 -36267589 - MIRc SINE MIR -110 158 77 6 1472 306 0 0 0 chr5 116269858 116269892 -36267367 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1472 503 250 144 28 chr5 116270228 116270409 -36266850 + B3 SINE B2 15 216 0 6 1472 223 317 12 0 chr5 116270709 116270791 -36266468 + C-rich Low_complexity Low_complexity 3 85 0 6 1472 870 184 0 13 chr5 116270873 116271022 -36266237 + B1_Mus2 SINE Alu 1 147 0 6 1472 22 70 0 0 chr5 116271044 116271087 -36266172 + AT_rich Low_complexity Low_complexity 1 43 0 6 1472 742 194 228 6 chr5 116271097 116271268 -36265991 - B3 SINE B2 -7 209 1 6 1472 465 34 0 0 chr5 116271290 116271349 -36265910 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1472 687 254 17 51 chr5 116271349 116271527 -36265732 - B3A SINE B2 -23 175 4 6 1472 316 221 132 0 chr5 116271549 116271617 -36265642 - PB1D10 SINE Alu -18 99 23 6 1472 235 200 207 24 chr5 116271553 116271635 -36265624 + YREP_Mm Unknown Unknown 223 319 -1493 6 1472 2005 159 14 8 chr5 116271828 116272184 -36265075 - RLTR15 LTR ERVK -1 358 1 6 1472 644 198 103 0 chr5 116272326 116272452 -36264807 + B1_Mur1 SINE Alu 11 149 0 6 1472 785 228 0 7 chr5 116272498 116272648 -36264611 + B1_Mur1 SINE Alu 1 149 0 6 1472 448 304 16 50 chr5 116272781 116272902 -36264357 + B1_Mur1 SINE Alu 4 120 -29 6 1472 510 299 74 32 chr5 116272940 116273130 -36264129 + B3A SINE B2 1 198 0 6 1472 794 144 29 7 chr5 116273808 116273948 -36263311 + B1_Mus1 SINE Alu 6 148 0 6 1472 569 252 83 7 chr5 116273994 116274138 -36263121 - RSINE1 SINE B4 -8 157 3 6 1472 1210 78 0 0 chr5 116274213 116274366 -36262893 - B2_Mm2 SINE B2 -41 154 2 6 1472 1694 135 0 8 chr5 116274367 116274629 -36262630 - ORR1A4 LTR MaLR -42 287 28 6 1472 413 182 0 83 chr5 116274657 116274777 -36262482 - ORR1B1 LTR MaLR -253 141 2 6 1472 213 211 0 0 chr5 116275087 116275144 -36262115 + CT-rich Low_complexity Low_complexity 4 60 0 6 1472 924 161 0 0 chr5 116275144 116275287 -36261972 - B1_Mus2 SINE Alu 0 147 5 6 1472 232 233 0 0 chr5 116275590 116275633 -36261626 + polypurine Low_complexity Low_complexity 5 47 0 6 1472 3587 214 8 10 chr5 116275672 116276374 -36260885 + Lx5 LINE L1 6333 7034 -16 6 1472 270 0 0 0 chr5 116276374 116276404 -36260855 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 6 1472 3587 214 8 10 chr5 116276404 116276415 -36260844 + Lx5 LINE L1 7035 7044 -6 6 1472 265 242 16 0 chr5 116276443 116276505 -36260754 + ID4_ SINE ID 5 67 -16 6 1472 27 0 0 0 chr5 116276522 116276549 -36260710 + AT_rich Low_complexity Low_complexity 1 27 0 6 1472 465 19 0 0 chr5 116276587 116276641 -36260618 + (TATG)n Simple_repeat Simple_repeat 3 56 0 6 1472 300 51 0 0 chr5 116276791 116276830 -36260429 + B1_Mus1 SINE Alu 1 39 -109 6 1472 274 83 0 0 chr5 116276827 116276863 -36260396 - RMER19B LTR ERVK -866 36 1 6 1472 282 56 0 0 chr5 116277023 116277059 -36260200 + (TAA)n Simple_repeat Simple_repeat 2 37 0 6 1472 1527 22 0 0 chr5 116277059 116277238 -36260021 + (GAA)n Simple_repeat Simple_repeat 2 180 0 6 1472 1816 135 66 148 chr5 116277248 116277674 -36259585 - ORR1B1 LTR MaLR 0 394 4 6 1472 781 254 33 6 chr5 116277759 116277973 -36259286 - ID_B1 SINE B4 -67 225 6 6 1472 21 0 0 0 chr5 116278212 116278233 -36259026 + AT_rich Low_complexity Low_complexity 1 21 0 6 1472 2560 139 16 106 chr5 116278261 116278839 -36258420 - RLTR11A LTR ERVK -2 526 1 6 1472 264 218 51 13 chr5 116278947 116279026 -36258233 + MLT1F2 LTR MaLR 32 113 -447 6 1472 308 48 47 16 chr5 116279172 116279190 -36258069 + (TTTTTG)n Simple_repeat Simple_repeat 1 18 0 6 1472 1191 34 7 0 chr5 116279190 116279336 -36257923 - B1_Mm SINE Alu 0 147 1 6 1472 308 48 47 16 chr5 116279336 116279381 -36257878 + (TTTTTG)n Simple_repeat Simple_repeat 1 48 0 6 1472 954 136 0 13 chr5 116279604 116279753 -36257506 - B1_Mur4 SINE Alu -2 148 2 6 1472 505 260 34 11 chr5 116279774 116279949 -36257310 - B3A SINE B2 -19 179 1 6 1472 851 74 89 0 chr5 116280574 116280709 -36256550 - B1_Mus2 SINE Alu 0 147 1 6 1472 456 221 13 99 chr5 116280709 116280753 -36256506 - MT2B LTR ERVL -445 156 126 6 1472 264 59 0 0 chr5 116281068 116281102 -36256157 + (GGA)n Simple_repeat Simple_repeat 2 35 0 6 1472 1344 71 33 0 chr5 116281104 116281287 -36255972 + B2_Mm2 SINE B2 2 190 -5 6 1472 678 264 52 43 chr5 116281361 116281591 -36255668 + B4 SINE B4 2 233 -59 6 1472 544 245 17 109 chr5 116281595 116281633 -36255626 + RSINE1 SINE B4 8 42 -123 6 1472 484 236 244 61 chr5 116281633 116281783 -36255476 + ORR1D2 LTR MaLR 3 177 -193 6 1472 1494 33 0 0 chr5 116281783 116281963 -36255296 + (TC)n Simple_repeat Simple_repeat 1 180 0 6 1472 484 236 244 61 chr5 116281963 116282123 -36255136 + ORR1D2 LTR MaLR 178 370 0 6 1472 544 245 17 109 chr5 116282123 116282258 -36255001 + RSINE1 SINE B4 43 165 0 6 1472 309 271 55 18 chr5 116282691 116282800 -36254459 - PB1D10 SINE Alu -2 115 3 6 1472 406 287 36 29 chr5 116282890 116283030 -36254229 + B3A SINE B2 57 197 -1 6 1472 30 0 0 0 chr5 116283161 116283191 -36254068 + AT_rich Low_complexity Low_complexity 1 30 0 6 1472 237 277 106 0 chr5 116283191 116283285 -36253974 - L1ME1 LINE L1 -247 5932 5829 6 1472 1981 70 11 146 chr5 116283953 116284276 -36252983 + ORR1A2 LTR MaLR 1 286 -41 6 1472 1613 21 0 5 chr5 116284276 116284469 -36252790 + B2_Mm1a SINE B2 1 192 -1 7 1472 1981 70 11 146 chr5 116284469 116284514 -36252745 + ORR1A2 LTR MaLR 287 319 -8 6 1472 1227 87 6 0 chr5 116284691 116284864 -36252395 - B2_Mm1a SINE B2 -19 174 1 7 1472 572 185 0 166 chr5 116284887 116285062 -36252197 - B1F2 SINE Alu 0 149 4 7 1472 873 235 5 5 chr5 116285062 116285139 -36252120 - ID SINE ID -141 83 7 7 1472 442 265 91 48 chr5 116285749 116285959 -36251300 + L1M4 LINE L1 5433 5651 -523 7 1472 252 0 0 0 chr5 116285975 116286003 -36251256 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1472 741 118 49 0 chr5 116286003 116286133 -36251126 + B1_Mur1 SINE Alu 11 146 -3 7 1472 623 243 7 0 chr5 116286196 116286344 -36250915 + B3A SINE B2 2 150 -48 7 1472 333 0 0 0 chr5 116286380 116286417 -36250842 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1472 785 180 0 7 chr5 116286585 116286725 -36250534 + B1_Mur4 SINE Alu 11 149 -1 7 1472 261 0 0 0 chr5 116286751 116286780 -36250479 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1472 763 92 0 0 chr5 116286820 116286929 -36250330 - B1_Mus1 SINE Alu -4 144 36 7 1472 246 132 0 0 chr5 116287152 116287190 -36250069 - BC1_Mm scRNA scRNA -101 51 14 7 1472 312 27 0 0 chr5 116287484 116287521 -36249738 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1472 344 333 9 0 chr5 116287650 116287761 -36249498 - PB1D10 SINE Alu -5 112 1 7 1472 205 179 26 0 chr5 116287898 116287937 -36249322 + G-rich Low_complexity Low_complexity 4 43 0 7 1472 1348 80 16 0 chr5 116288037 116288224 -36249035 - B2_Mm2 SINE B2 -4 191 2 7 1472 670 200 59 0 chr5 116288593 116288728 -36248531 - B1_Mur2 SINE Alu 0 149 7 7 1472 480 252 102 74 chr5 116288759 116289042 -36248217 - B4A SINE B4 0 292 2 7 1472 355 258 61 30 chr5 116289056 116289188 -36248071 - B1F SINE Alu 0 149 14 7 1472 233 29 0 29 chr5 116289339 116289374 -36247885 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7 1472 1210 34 0 0 chr5 116289379 116289526 -36247733 - B1_Mus2 SINE Alu 0 147 1 7 1472 379 245 21 0 chr5 116289802 116289896 -36247363 + L1MC1 LINE L1 6004 6099 -234 7 1472 1196 102 11 0 chr5 116290151 116290328 -36246931 + B2_Mm2 SINE B2 11 189 -6 7 1472 228 35 0 0 chr5 116290536 116290565 -36246694 + (CAAAC)n Simple_repeat Simple_repeat 3 31 0 7 1472 562 242 43 65 chr5 116290612 116290779 -36246480 - RMER17C LTR ERVK 0 410 242 7 1472 1011 17 0 0 chr5 116290779 116290896 -36246363 + (GGGAGA)n Simple_repeat Simple_repeat 2 118 0 7 1472 562 180 21 60 chr5 116290896 116291048 -36246211 - RMER17C LTR ERVK -169 241 4 7 1472 797 255 53 110 chr5 116291097 116291397 -36245862 + ORR1D2 LTR MaLR 17 288 -82 7 1472 2656 116 94 33 chr5 116291397 116291886 -36245373 - MURVY-LTR LTR ERV1 0 519 1 7 1472 797 259 63 147 chr5 116291886 116291966 -36245293 + ORR1D2 LTR MaLR 289 364 -6 7 1472 516 228 0 66 chr5 116291954 116291998 -36245261 + B3 SINE B2 28 71 -145 7 1472 2937 128 79 37 chr5 116291998 116292542 -36244717 - RMER2 LTR ERV1 0 567 1 7 1472 516 228 0 66 chr5 116292542 116292633 -36244626 + B3 SINE B2 72 154 -62 7 1472 631 143 0 9 chr5 116292604 116292710 -36244549 - B1_Mm SINE Alu -41 106 2 7 1472 433 281 7 52 chr5 116292710 116292758 -36244501 - ID_B1 SINE B4 -38 186 40 7 1472 209 320 96 39 chr5 116293166 116293270 -36243989 + MER5B DNA MER1_type 21 130 -48 7 1472 698 66 94 0 chr5 116293287 116293393 -36243866 - B1_Mus1 SINE Alu 0 148 33 7 1472 589 261 6 61 chr5 116293427 116293590 -36243669 - RSINE1 SINE B4 -9 156 3 7 1472 278 240 71 30 chr5 116293841 116293940 -36243319 - MurSatRep1 Unknown Unknown -1880 257 155 7 1472 180 0 0 0 chr5 116293940 116293960 -36243299 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 7 1472 184 255 43 0 chr5 116293964 116294011 -36243248 + MIRc SINE MIR 45 93 -175 7 1472 614 249 2 48 chr5 116294188 116294382 -36242877 - B3A SINE B2 -2 214 29 7 1472 213 227 147 29 chr5 116294876 116294944 -36242315 + B3A SINE B2 12 87 -111 7 1472 245 185 359 0 chr5 116296078 116296170 -36241089 - MT2A LTR ERVL 0 533 409 7 1472 1084 71 131 0 chr5 116296685 116296853 -36240406 - B2_Mm2 SINE B2 -4 191 2 7 1472 370 279 7 72 chr5 116296960 116297099 -36240160 - B3A SINE B2 -22 176 47 7 1472 638 223 0 51 chr5 116297182 116297338 -36239921 - B1_Mur1 SINE Alu 0 149 2 7 1472 457 254 75 0 chr5 116297440 116297574 -36239685 + MTD LTR MaLR 276 419 0 7 1472 226 317 116 27 chr5 116298539 116298685 -36238574 - MER5A DNA MER1_type -4 185 27 7 1472 410 144 59 109 chr5 116298776 116298877 -36238382 + MT2B LTR ERVL 162 257 -344 7 1472 749 114 98 0 chr5 116298787 116298910 -36238349 + B1_Mur3 SINE Alu 15 149 0 7 1472 408 298 59 61 chr5 116299159 116299455 -36237804 - B4A SINE B4 -2 290 2 7 1472 510 302 87 20 chr5 116299530 116299726 -36237533 - MER58A DNA MER1_type -14 210 2 7 1472 416 197 0 0 chr5 116299892 116299963 -36237296 - PB1D10 SINE Alu -46 71 1 7 1472 360 43 0 0 chr5 116299975 116300021 -36237238 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1472 682 325 16 24 chr5 116300022 116300274 -36236985 - B4A SINE B4 -19 273 24 7 1472 454 317 69 50 chr5 116300394 116300712 -36236547 - MER102a DNA MER1_type -11 319 4 7 1472 1153 187 4 13 chr5 116301331 116301559 -36235700 + URR1A DNA MER1_type 1 226 0 7 1472 343 206 227 0 chr5 116301704 116301801 -36235458 - MLT1K LTR MaLR -26 569 451 7 1472 504 220 11 33 chr5 116301979 116302162 -36235097 + CT-rich Low_complexity Low_complexity 1 179 0 7 1472 289 324 109 23 chr5 116302622 116302796 -36234463 - MLT1K LTR MaLR -23 466 278 7 1472 189 94 0 0 chr5 116302832 116302864 -36234395 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 7 1472 180 0 0 0 chr5 116303020 116303040 -36234219 + (C)n Simple_repeat Simple_repeat 1 20 0 7 1472 812 175 21 7 chr5 116303704 116303848 -36233411 - B1_Mur1 SINE Alu -1 148 3 7 1472 765 246 101 37 chr5 116304055 116304381 -36232878 - ORR1E LTR MaLR -12 367 1 7 1472 672 249 93 116 chr5 116304619 116304887 -36232372 + MTE2a LTR MaLR 105 366 -13 7 1472 623 206 14 84 chr5 116305695 116305838 -36231421 - B1_Mur2 SINE Alu -5 144 12 7 1472 261 270 51 116 chr5 116305734 116305861 -36231398 - B4A SINE B4 -98 194 77 7 1472 479 271 23 0 chr5 116305861 116305990 -36231269 + B3 SINE B2 1 132 -84 7 1472 300 27 0 0 chr5 116306221 116306258 -36231001 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 7 1472 1532 43 0 0 chr5 116306262 116306449 -36230810 - B2_Mm1a SINE B2 -5 188 2 7 1472 672 184 194 6 chr5 116307145 116307315 -36229944 + B3 SINE B2 2 203 -13 7 1472 244 160 80 0 chr5 116307338 116307388 -36229871 - B1_Mur1 SINE Alu 0 149 96 7 1472 477 282 17 19 chr5 116308429 116308558 -36228701 - B4A SINE B4 -104 120 2 7 1472 278 205 12 0 chr5 116310324 116310407 -36226852 + (TG)n Simple_repeat Simple_repeat 2 85 0 7 1472 566 162 8 0 chr5 116310408 116310525 -36226734 + GA-rich Low_complexity Low_complexity 2 119 0 7 1472 1438 68 5 0 chr5 116310588 116310778 -36226481 - B2_Mm1t SINE B2 -1 192 2 7 1472 227 188 17 39 chr5 116310944 116311013 -36226246 - ORR1E LTR MaLR -36 343 270 7 1472 398 234 69 43 chr5 116312249 116312365 -36224894 + ID_B1 SINE B4 15 133 -91 7 1472 254 256 48 12 chr5 116312369 116312452 -36224807 - B4A SINE B4 -19 273 188 7 1472 22 0 0 0 chr5 116313330 116313352 -36223907 + AT_rich Low_complexity Low_complexity 1 22 0 7 1472 514 202 42 8 chr5 116313353 116313473 -36223786 - B1_Mur1 SINE Alu -7 142 19 7 1472 311 174 32 95 chr5 116313391 116313486 -36223773 - MT2B LTR ERVL -344 257 169 7 1472 791 266 81 52 chr5 116313538 116313907 -36223352 + L1MA6 LINE L1 5916 6295 -5 7 1472 513 224 31 23 chr5 116313938 116314066 -36223193 + RSINE1 SINE B4 3 131 -34 7 1472 327 65 0 0 chr5 116314066 116314112 -36223147 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1472 508 213 28 0 chr5 116314302 116314410 -36222849 + PB1D9 SINE Alu 4 114 -6 7 1472 210 308 25 25 chr5 116314444 116314524 -36222735 - ID4 SINE ID -3 80 1 7 1472 617 202 25 0 chr5 116315132 116315251 -36222008 - B1_Mur2 SINE Alu -27 122 1 7 1472 335 227 44 22 chr5 116315262 116315352 -36221907 - B4 SINE B4 -39 253 162 7 1472 582 15 0 0 chr5 116315642 116315709 -36221550 + (GA)n Simple_repeat Simple_repeat 2 68 0 7 1472 234 333 0 35 chr5 116315747 116315834 -36221425 - MTEa LTR MaLR -221 158 75 7 1472 1181 120 81 9 chr5 116317147 116317358 -36219901 - URR1A DNA MER1_type 0 226 1 7 1472 202 114 29 0 chr5 116317847 116317882 -36219377 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1472 598 268 119 23 chr5 116318024 116318284 -36218975 - B4A SINE B4 -7 285 1 7 1472 351 0 0 0 chr5 116318298 116318337 -36218922 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1472 456 259 9 9 chr5 116318350 116318463 -36218796 - RSINE1 SINE B4 -50 115 3 7 1472 393 207 50 41 chr5 116319285 116319406 -36217853 + RSINE1 SINE B4 4 125 -40 7 1472 225 210 226 0 chr5 116319503 116319565 -36217694 + PB1D7 SINE Alu 36 111 -9 7 1472 698 167 8 15 chr5 116319676 116319810 -36217449 - B1_Mur4 SINE Alu -16 134 2 7 1472 557 318 40 7 chr5 116319982 116320134 -36217125 - RSINE1 SINE B4 -6 159 3 7 1472 243 0 0 0 chr5 116320142 116320169 -36217090 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1472 390 256 125 22 chr5 116321893 116322029 -36215230 - MTEb LTR MaLR -216 163 14 7 1472 257 312 20 30 chr5 116322463 116322562 -36214697 + B4A SINE B4 2 99 -193 8 1472 215 380 0 21 chr5 116322705 116322799 -36214460 + RSINE1 SINE B4 74 165 0 8 1472 378 0 0 0 chr5 116322827 116322869 -36214390 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1472 222 37 0 0 chr5 116322964 116322991 -36214268 + (TA)n Simple_repeat Simple_repeat 2 28 0 8 1472 252 0 0 0 chr5 116323050 116323078 -36214181 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1472 839 272 34 28 chr5 116324610 116324935 -36212324 - RLTR15 LTR ERVK -32 327 1 8 1472 180 176 0 0 chr5 116325342 116325376 -36211883 + (CATA)n Simple_repeat Simple_repeat 1 34 0 8 1472 1215 104 33 0 chr5 116325473 116325655 -36211604 - B2_Mm2 SINE B2 -7 188 1 8 1472 902 109 0 114 chr5 116326459 116326625 -36210634 + B1_Mus1 SINE Alu 2 148 0 8 1472 28 29 0 0 chr5 116327246 116327281 -36209978 + AT_rich Low_complexity Low_complexity 1 35 0 8 1472 822 126 22 7 chr5 116327284 116327420 -36209839 - B1_Mm SINE Alu -8 139 2 8 1472 393 22 0 0 chr5 116327428 116327474 -36209785 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 8 1472 252 0 0 0 chr5 116327477 116327505 -36209754 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1472 198 0 0 0 chr5 116327505 116327526 -36209733 + (GA)n Simple_repeat Simple_repeat 1 22 0 8 1472 423 0 0 0 chr5 116327545 116327592 -36209667 + (GA)n Simple_repeat Simple_repeat 2 48 0 8 1472 439 294 40 69 chr5 116327592 116327767 -36209492 - B3 SINE B2 -46 170 1 8 1472 288 0 0 0 chr5 116327967 116327999 -36209260 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1472 240 35 0 0 chr5 116327999 116328027 -36209232 + (GA)n Simple_repeat Simple_repeat 2 30 0 8 1472 1184 40 0 0 chr5 116328246 116328394 -36208865 - B1_Mus1 SINE Alu 0 148 1 8 1472 561 186 52 85 chr5 116328993 116329146 -36208113 + B1_Mur2 SINE Alu 2 149 0 8 1472 262 263 0 15 chr5 116329409 116329544 -36207715 + (TG)n Simple_repeat Simple_repeat 2 134 0 8 1472 180 292 0 0 chr5 116329589 116329685 -36207574 + (TG)n Simple_repeat Simple_repeat 1 96 0 8 1472 368 290 76 35 chr5 116329738 116330010 -36207249 - B4A SINE B4 -1 291 1 8 1472 354 289 106 15 chr5 116330231 116330397 -36206862 + B4A SINE B4 2 186 -106 8 1472 487 272 6 58 chr5 116330397 116330569 -36206690 + RSINE1 SINE B4 3 165 0 8 1472 354 289 106 15 chr5 116330569 116330666 -36206593 + B4A SINE B4 187 289 -3 8 1472 231 204 0 0 chr5 116331301 116331350 -36205909 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1472 505 228 17 81 chr5 116331475 116331647 -36205612 - B3A SINE B2 0 198 38 8 1472 1346 70 16 0 chr5 116332927 116333112 -36204147 - B2_Mm2 SINE B2 -7 188 1 8 1472 378 0 0 0 chr5 116333912 116333954 -36203305 + (TC)n Simple_repeat Simple_repeat 1 42 0 8 1472 538 287 83 16 chr5 116333983 116334214 -36203045 - B4A SINE B4 -2 290 1 8 1472 419 185 0 11 chr5 116334222 116334315 -36202944 + (TA)n Simple_repeat Simple_repeat 2 93 0 8 1472 542 182 0 59 chr5 116334332 116334484 -36202775 - Lx3B LINE L1 -1 6972 6830 8 1472 232 284 0 58 chr5 116334511 116334597 -36202662 + ID4 SINE ID 2 82 -1 8 1472 1249 76 10 36 chr5 116335247 116335439 -36201820 - B2_Mm1t SINE B2 -6 187 1 8 1472 220 330 65 9 chr5 116335511 116335618 -36201641 - MIRb SINE MIR -68 200 88 8 1472 180 0 0 0 chr5 116335873 116335893 -36201366 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1472 428 176 19 38 chr5 116336136 116336242 -36201017 + ID_B1 SINE B4 121 224 0 8 1472 186 43 0 0 chr5 116337610 116337633 -36199626 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 8 1472 817 243 163 4 chr5 116337853 116337972 -36199287 - MTE2a LTR MaLR -55 324 182 8 1472 498 17 0 0 chr5 116337972 116338031 -36199228 + (CAGCT)n Simple_repeat Simple_repeat 3 61 0 8 1472 817 243 163 4 chr5 116338031 116338175 -36199084 - MTE2a LTR MaLR -198 181 21 8 1472 248 328 35 88 chr5 116338307 116338631 -36198628 - MTE2a LTR MaLR -15 364 42 8 1472 364 351 25 62 chr5 116339063 116339306 -36197953 - MER2 DNA MER2_type -40 305 72 8 1472 413 186 0 38 chr5 116339408 116339514 -36197745 + B3A SINE B2 2 103 -95 8 1472 232 287 74 31 chr5 116339514 116339570 -36197689 + B4A SINE B4 2 170 -122 8 1472 633 266 31 20 chr5 116342057 116342253 -36195006 - MER20 DNA MER1_type 0 219 22 8 1472 516 252 118 0 chr5 116342406 116342533 -36194726 + MER5A1 DNA MER1_type 21 162 -4 8 1472 186 43 0 0 chr5 116342723 116342746 -36194513 + (TG)n Simple_repeat Simple_repeat 1 23 0 8 1472 423 253 0 0 chr5 116342762 116342907 -36194352 + (TG)n Simple_repeat Simple_repeat 2 146 0 8 1472 207 0 0 0 chr5 116342907 116342930 -36194329 + (GA)n Simple_repeat Simple_repeat 1 23 0 8 1472 423 253 0 0 chr5 116342930 116342946 -36194313 + (TG)n Simple_repeat Simple_repeat 2 17 0 8 1472 649 240 13 26 chr5 116342984 116343138 -36194121 - RSINE1 SINE B4 -11 154 3 8 1472 180 0 0 0 chr5 116345722 116345742 -36191517 + (C)n Simple_repeat Simple_repeat 1 20 0 8 1472 226 245 0 0 chr5 116345996 116346049 -36191210 - L1M5 LINE L1 -388 5774 5722 8 1472 995 273 17 14 chr5 116346333 116346589 -36190670 + B4A SINE B4 2 261 -31 8 1472 183 42 0 0 chr5 116346589 116346613 -36190646 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1472 995 273 17 14 chr5 116346613 116346646 -36190613 + B4A SINE B4 262 292 0 8 1472 285 275 11 0 chr5 116346673 116346764 -36190495 + (CA)n Simple_repeat Simple_repeat 1 92 0 8 1472 360 0 0 0 chr5 116346797 116346837 -36190422 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1472 381 22 0 0 chr5 116346837 116346882 -36190377 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1472 267 333 39 0 chr5 116347529 116347631 -36189628 + L1MC5 LINE L1 7333 7438 -523 8 1472 390 299 50 19 chr5 116347894 116348054 -36189205 - RSINE1 SINE B4 0 165 1 8 1472 346 244 37 0 chr5 116348128 116348210 -36189049 + RSINE1 SINE B4 81 165 0 8 1472 3319 25 5 0 chr5 116348380 116348774 -36188485 - MTA_Mm LTR MaLR 0 396 1 8 1472 263 253 21 65 chr5 116348989 116349000 -36188259 + MT2B LTR ERVL 153 159 -442 8 1472 415 204 92 9 chr5 116349000 116349109 -36188150 + PB1D9 SINE Alu 1 118 -2 8 1472 627 57 0 0 chr5 116349624 116349712 -36187547 + (TG)n Simple_repeat Simple_repeat 1 88 0 8 1472 862 201 15 36 chr5 116349713 116349909 -36187350 - B3 SINE B2 -22 194 3 8 1472 614 273 87 0 chr5 116349955 116350127 -36187132 - B3A SINE B2 -11 187 1 8 1472 438 125 48 40 chr5 116351421 116351546 -36185713 + C-rich Low_complexity Low_complexity 6 131 0 8 1472 308 242 120 10 chr5 116351548 116351648 -36185611 - PB1D10 SINE Alu -6 111 1 8 1472 233 254 0 33 chr5 116353000 116353061 -36184198 - RSINE1 SINE B4 -90 75 17 8 1472 621 261 95 103 chr5 116353902 116354261 -36182998 - MTE2a LTR MaLR -7 372 17 8 1472 402 199 144 68 chr5 116354331 116354477 -36182782 - B3A SINE B2 -28 170 14 8 1472 328 260 115 0 chr5 116354582 116354686 -36182573 - PB1D10 SINE Alu -1 116 1 8 1472 461 153 14 0 chr5 116355273 116355345 -36181914 - ID4_ SINE ID -8 75 3 8 1472 669 151 0 0 chr5 116355357 116355476 -36181783 + (TG)n Simple_repeat Simple_repeat 1 119 0 8 1472 680 281 7 125 chr5 116355484 116355567 -36181692 - B4 SINE B4 -4 288 220 8 1472 592 303 35 0 chr5 116355567 116355765 -36181494 - B3 SINE B2 -8 208 4 8 1472 680 281 7 125 chr5 116355765 116355962 -36181297 - B4 SINE B4 -73 219 41 8 1472 305 271 125 17 chr5 116355995 116356115 -36181144 - B1F1 SINE Alu -12 137 5 8 1472 263 265 45 57 chr5 116356569 116356657 -36180602 + PB1D10 SINE Alu 30 116 -33 8 1472 187 254 0 87 chr5 116356663 116356732 -36180527 - MIRc SINE MIR -140 128 66 8 1472 201 39 0 0 chr5 116358901 116358927 -36178332 + (CTGTG)n Simple_repeat Simple_repeat 3 28 0 8 1472 307 211 0 0 chr5 116361758 116361815 -36175444 - ID4_ SINE ID -8 75 19 8 1472 295 185 0 122 chr5 116361759 116361833 -36175426 - tRNA-Ala-GCY_ tRNA tRNA -7 68 4 8 1472 234 290 87 29 chr5 116363158 116363261 -36173998 - MIR SINE MIR -65 197 89 8 1472 511 196 14 0 chr5 116363531 116363674 -36173585 + (TG)n Simple_repeat Simple_repeat 2 146 0 8 1472 249 169 0 0 chr5 116364392 116364451 -36172808 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 8 1472 245 258 0 68 chr5 116365362 116365449 -36171810 + C-rich Low_complexity Low_complexity 1 81 0 8 1472 181 279 42 56 chr5 116365974 116366046 -36171213 - MIRb SINE MIR -21 247 177 8 1472 1643 16 0 5 chr5 116366078 116366272 -36170987 + B2_Mm1a SINE B2 1 193 0 8 1472 921 110 0 22 chr5 116366952 116367091 -36170168 + B1_Mus1 SINE Alu 2 137 -11 8 1472 1230 106 0 0 chr5 116367378 116367745 -36169514 + (TCCA)n Simple_repeat Simple_repeat 1 367 0 8 1472 186 351 0 0 chr5 116367768 116367825 -36169434 - L2b LINE L2 -55 3320 3264 8 1472 416 252 39 0 chr5 116368127 116368230 -36169029 - L2a LINE L2 -2 3424 3318 8 1472 347 351 53 0 chr5 116370482 116370613 -36166646 - MER20 DNA MER1_type -2 217 80 8 1472 742 265 40 15 chr5 116371192 116371391 -36165868 + B3 SINE B2 1 204 -12 8 1472 24 0 0 0 chr5 116371391 116371415 -36165844 + AT_rich Low_complexity Low_complexity 1 24 0 8 1472 404 277 11 0 chr5 116371554 116371648 -36165611 + PB1D10 SINE Alu 5 99 -18 8 1472 192 77 0 0 chr5 116371758 116371784 -36165475 + (CA)n Simple_repeat Simple_repeat 2 27 0 8 1472 360 0 0 0 chr5 116372899 116372939 -36164320 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1472 199 253 276 0 chr5 116373289 116373376 -36163883 - MIRb SINE MIR -117 151 41 8 1472 198 0 0 0 chr5 116373630 116373652 -36163607 + (C)n Simple_repeat Simple_repeat 1 22 0 8 1472 292 309 18 26 chr5 116373892 116374005 -36163254 + MIR SINE MIR 103 214 -48 8 1472 268 292 123 0 chr5 116374062 116374214 -36163045 - MLT1D LTR MaLR -21 659 424 8 1472 447 312 106 26 chr5 116374435 116374662 -36162597 - MLT1D LTR MaLR -237 268 24 8 1472 367 273 90 34 chr5 116374776 116374954 -36162305 + L2b LINE L2 2996 3183 -192 9 1472 27 0 0 0 chr5 116375369 116375396 -36161863 + AT_rich Low_complexity Low_complexity 1 27 0 9 1472 24 0 0 0 chr5 116375707 116375731 -36161528 + AT_rich Low_complexity Low_complexity 1 24 0 9 1472 198 0 0 0 chr5 116376124 116376146 -36161113 + (A)n Simple_repeat Simple_repeat 1 22 0 9 1472 189 107 0 0 chr5 116377040 116377068 -36160191 + (T)n Simple_repeat Simple_repeat 1 28 0 9 1472 247 185 14 58 chr5 116377216 116377285 -36159974 + AmnSINE1 SINE SINE 428 493 -82 9 1472 504 309 92 46 chr5 116378199 116378416 -36158843 + MER58B DNA MER1_type 26 252 -89 9 1472 1416 208 177 28 chr5 116380224 116380733 -36156526 - RMER4B LTR ERVK 0 585 1 9 1472 511 278 0 40 chr5 116380836 116380963 -36156296 + RSINE1 SINE B4 22 143 -22 9 1472 198 0 0 0 chr5 116380963 116380985 -36156274 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 9 1472 511 278 0 40 chr5 116380985 116381007 -36156252 + RSINE1 SINE B4 144 165 0 9 1472 320 203 14 0 chr5 116381206 116381275 -36155984 - PB1D10 SINE Alu -21 96 27 9 1472 255 200 42 14 chr5 116381393 116381464 -36155795 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 9 1472 672 206 7 34 chr5 116381468 116381614 -36155645 - ID_B1 SINE B4 -1 223 82 9 1472 324 246 23 130 chr5 116382002 116382133 -36155126 + RSINE1 SINE B4 49 165 0 9 1472 212 167 0 0 chr5 116382138 116382174 -36155085 + GA-rich Low_complexity Low_complexity 2 37 0 9 1472 235 234 0 0 chr5 116382186 116382233 -36155026 + ID4 SINE ID 3 49 -34 9 1472 207 0 0 0 chr5 116383180 116383203 -36154056 + (CCCCCG)n Simple_repeat Simple_repeat 2 24 0 9 1472 390 271 65 16 chr5 116384151 116384275 -36152984 - ID_B1 SINE B4 0 224 95 9 1472 360 0 0 0 chr5 116384287 116384327 -36152932 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1472 476 168 0 5 chr5 116385123 116385218 -36152041 + B3 SINE B2 28 119 -76 9 1472 567 220 52 52 chr5 116385452 116385663 -36151596 - RMER3D-int LTR ERVK -795 2047 1837 9 1472 237 159 0 0 chr5 116385852 116385896 -36151363 + GA-rich Low_complexity Low_complexity 2 45 0 9 1472 232 220 102 0 chr5 116385980 116386039 -36151220 - PB1D10 SINE Alu 0 117 53 9 1472 297 0 0 0 chr5 116387284 116387317 -36149942 + (TTG)n Simple_repeat Simple_repeat 1 33 0 9 1472 302 263 51 31 chr5 116388403 116388501 -36148758 + L2b LINE L2 3276 3375 0 9 1472 466 192 168 8 chr5 116389988 116390119 -36147140 - L2a LINE L2 0 3426 3275 9 1472 216 0 0 0 chr5 116391604 116391628 -36145631 + (TG)n Simple_repeat Simple_repeat 1 24 0 9 1473 1680 32 0 0 chr5 116392277 116392467 -36144792 - B2_Mm1a SINE B2 -2 191 2 9 1473 496 222 205 74 chr5 116392489 116392679 -36144580 - B3 SINE B2 -1 215 1 9 1473 251 72 0 23 chr5 116392904 116392947 -36144312 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1473 346 321 110 39 chr5 116392987 116393474 -36143785 - L1MEd LINE L1 -4739 1486 944 9 1473 257 254 0 15 chr5 116396315 116396383 -36140876 + ID4 SINE ID 1 67 -16 9 1473 563 259 20 20 chr5 116398305 116398451 -36138808 - RSINE1 SINE B4 -18 147 2 9 1473 209 57 0 28 chr5 116399340 116399376 -36137883 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1473 1075 57 0 54 chr5 116399379 116399527 -36137732 - B1_Mus2 SINE Alu -7 140 1 9 1473 621 72 0 0 chr5 116399536 116399619 -36137640 + (TCCC)n Simple_repeat Simple_repeat 4 86 0 9 1473 315 0 0 0 chr5 116399814 116399849 -36137410 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 9 1473 281 360 10 129 chr5 116400298 116400499 -36136760 + MIR SINE MIR 1 177 -85 9 1473 360 255 27 6 chr5 116401057 116401165 -36136094 - B3A SINE B2 -3 213 104 9 1473 494 214 95 36 chr5 116401277 116401424 -36135835 - B3A SINE B2 -63 153 4 9 1473 226 383 17 17 chr5 116401891 116402008 -36135251 - MER2B DNA MER2_type -16 320 204 9 1473 489 169 111 3 chr5 116402070 116402178 -36135081 + B1_Mur2 SINE Alu 9 126 -21 9 1473 214 340 18 27 chr5 116403160 116403187 -36134072 - PB1D10 SINE Alu 0 117 7 9 1473 218 333 24 12 chr5 116403187 116403272 -36133987 - ID_B1 SINE B4 -51 173 88 9 1473 578 276 9 93 chr5 116403303 116403519 -36133740 - B3A SINE B2 0 198 1 9 1473 530 196 126 15 chr5 116403920 116404055 -36133204 + B3A SINE B2 2 151 -47 9 1473 396 0 0 0 chr5 116404089 116404133 -36133126 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1473 360 179 0 0 chr5 116405796 116405874 -36131385 + CT-rich Low_complexity Low_complexity 2 79 0 9 1473 462 144 0 43 chr5 116406661 116406755 -36130504 - RLTR11A LTR ERVK -184 344 255 9 1473 787 231 87 0 chr5 116407315 116407510 -36129749 - B3 SINE B2 -4 212 1 9 1473 1260 54 0 0 chr5 116407854 116408002 -36129257 + B1_Mus1 SINE Alu 1 148 0 9 1473 246 62 0 0 chr5 116408002 116408034 -36129225 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 9 1473 1197 176 99 35 chr5 116408445 116408727 -36128532 + MTD LTR MaLR 12 311 -108 9 1473 299 282 13 0 chr5 116408816 116408894 -36128365 - RMER15 LTR ERVL -72 503 425 9 1473 407 341 50 0 chr5 116409088 116409308 -36127951 - L1MEc LINE L1 -4915 1485 1255 9 1473 247 250 29 29 chr5 116409983 116410119 -36127140 + (TCTG)n Simple_repeat Simple_repeat 3 138 0 9 1473 246 336 44 0 chr5 116410516 116410629 -36126630 - ORR1E LTR MaLR -236 123 6 9 1473 309 82 0 0 chr5 116410752 116410801 -36126458 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 9 1473 396 0 0 0 chr5 116412658 116412702 -36124557 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 1473 378 0 0 0 chr5 116412702 116412743 -36124516 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1473 304 212 62 12 chr5 116412775 116412856 -36124403 - B1F SINE Alu -55 94 10 9 1473 27 0 0 0 chr5 116414773 116414800 -36122459 + AT_rich Low_complexity Low_complexity 1 27 0 9 1473 371 269 106 0 chr5 116414995 116415099 -36122160 + PB1D10 SINE Alu 3 117 0 9 1473 359 89 18 0 chr5 116415273 116415329 -36121930 + (TC)n Simple_repeat Simple_repeat 1 57 0 9 1473 315 275 49 24 chr5 116415349 116415513 -36121746 + (CATG)n Simple_repeat Simple_repeat 2 169 0 9 1473 378 301 0 27 chr5 116415549 116415699 -36121560 + (CA)n Simple_repeat Simple_repeat 2 147 0 9 1473 396 0 0 0 chr5 116416505 116416549 -36120710 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1473 360 0 0 0 chr5 116416822 116416862 -36120397 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1473 1211 43 0 0 chr5 116418284 116418422 -36118837 + B1_Mm SINE Alu 4 141 -6 9 1473 634 256 24 21 chr5 116418466 116418651 -36118608 + B3A SINE B2 1 194 -1 9 1473 214 298 71 0 chr5 116418651 116418735 -36118524 - PB1D9 SINE Alu -2 118 29 9 1473 297 281 29 59 chr5 116419262 116419364 -36117895 - MER81 DNA AcHobo -12 102 4 9 1473 354 308 30 37 chr5 116419589 116419724 -36117535 - MER20 DNA MER1_type -55 164 31 9 1473 454 198 112 32 chr5 116421771 116421896 -36115363 - MLT1A1 LTR MaLR -5 403 269 9 1473 407 301 25 50 chr5 116421929 116422090 -36115169 - MLT1A1 LTR MaLR -217 157 1 9 1473 203 306 0 0 chr5 116422508 116422557 -36114702 + (CACG)n Simple_repeat Simple_repeat 1 49 0 9 1473 255 341 97 30 chr5 116422558 116422857 -36114402 - L1ME4a LINE L1 -188 5936 5618 9 1473 23 33 0 0 chr5 116422909 116422939 -36114320 + AT_rich Low_complexity Low_complexity 1 30 0 9 1473 1112 88 0 13 chr5 116423318 116423467 -36113792 + B1_Mus1 SINE Alu 2 148 0 9 1473 525 361 21 64 chr5 116423969 116424250 -36113009 - B4A SINE B4 -7 285 17 9 1473 198 0 0 0 chr5 116424253 116424275 -36112984 + (TCCCG)n Simple_repeat Simple_repeat 2 23 0 9 1473 198 0 0 0 chr5 116424281 116424303 -36112956 + (CCA)n Simple_repeat Simple_repeat 2 23 0 9 1473 231 257 39 103 chr5 116425183 116425261 -36111998 + L1MB3 LINE L1 6053 6125 -58 9 1473 246 209 14 43 chr5 116425267 116425337 -36111922 + B4A SINE B4 1 68 -224 9 1473 211 316 93 12 chr5 116425791 116425956 -36111303 - MIR3 SINE MIR -75 201 17 9 1473 180 0 0 0 chr5 116426050 116426070 -36111189 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1473 1000 214 10 15 chr5 116426501 116426700 -36110559 - B3A SINE B2 0 198 1 9 1473 432 0 0 0 chr5 116426837 116426885 -36110374 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1473 352 264 54 77 chr5 116427787 116427955 -36109304 - ORR1D2 LTR MaLR -6 364 201 9 1473 189 145 0 113 chr5 116428261 116428323 -36108936 - L2b LINE L2 -16 3359 3305 9 1473 336 253 98 11 chr5 116430321 116430413 -36106846 - PB1D10 SINE Alu -8 109 10 9 1473 344 306 95 113 chr5 116430908 116431192 -36106067 - L1M2 LINE L1 -750 5393 5115 9 1473 234 256 221 0 chr5 116432274 116432360 -36104899 - MLT1A1 LTR MaLR -12 396 292 9 1473 538 217 0 0 chr5 116432597 116432703 -36104556 + PB1D9 SINE Alu 11 116 -4 9 1473 611 359 73 45 chr5 116433770 116433866 -36103393 - L1MB8 LINE L1 -63 6126 6014 9 1473 552 215 21 69 chr5 116433866 116434011 -36103248 + B1_Mur4 SINE Alu 1 138 -12 9 1473 1263 323 52 33 chr5 116434011 116434686 -36102573 - L1MB8 LINE L1 -162 6016 5334 9 1473 37 0 0 0 chr5 116435913 116435950 -36101309 + AT_rich Low_complexity Low_complexity 1 37 0 9 1473 794 180 6 0 chr5 116436295 116436473 -36100786 + CT-rich Low_complexity Low_complexity 1 179 0 9 1473 302 286 12 23 chr5 116438813 116438899 -36098360 - MLT1A1 LTR MaLR -19 389 305 9 1473 428 191 84 11 chr5 116439603 116439698 -36097561 - ID_B1 SINE B4 -7 217 116 9 1473 515 233 17 8 chr5 116440685 116440802 -36096457 + B1_Mur1 SINE Alu 32 149 0 9 1473 250 299 109 33 chr5 116441086 116441269 -36095990 - L1M5 LINE L1 -3129 3017 2821 1 1473 525 243 169 84 chr5 116441587 116441748 -36095511 - MTEa LTR MaLR -96 283 104 1 1473 666 271 130 65 chr5 116441748 116442103 -36095156 + MTE2a LTR MaLR 1 378 -1 1 1473 525 243 169 84 chr5 116442103 116442202 -36095057 - MTEa LTR MaLR -276 103 1 1 1473 516 272 64 23 chr5 116442372 116442545 -36094714 + MER20 DNA MER1_type 33 212 -7 1 1473 210 37 0 0 chr5 116444555 116444582 -36092677 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1473 2336 59 0 0 chr5 116444588 116444894 -36092365 - L1Md_F2 LINE L1 -13 6569 6264 1 1473 426 91 0 0 chr5 116444988 116445002 -36092257 + (T)n Simple_repeat Simple_repeat 1 14 0 1 1473 1155 54 0 0 chr5 116445002 116445149 -36092110 - B1_Mus2 SINE Alu 0 147 1 1 1473 426 91 0 0 chr5 116445149 116445200 -36092059 + (T)n Simple_repeat Simple_repeat 1 51 0 1 1473 210 37 0 0 chr5 116445961 116445988 -36091271 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 1473 276 158 0 0 chr5 116445988 116446045 -36091214 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1473 228 200 0 0 chr5 116446081 116446136 -36091123 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1473 217 206 30 45 chr5 116446639 116446705 -36090554 + PB1D10 SINE Alu 52 116 -1 1 1473 922 155 40 33 chr5 116446774 116446962 -36090297 + B3 SINE B2 28 197 -19 1 1473 204 274 0 45 chr5 116448212 116448300 -36088959 + G-rich Low_complexity Low_complexity 2 85 0 1 1473 24 53 0 0 chr5 116448475 116448513 -36088746 + AT_rich Low_complexity Low_complexity 1 38 0 1 1473 602 165 9 9 chr5 116448513 116448623 -36088636 - B1_Mur1 SINE Alu 0 149 40 1 1473 424 218 35 35 chr5 116448695 116449041 -36088218 + CT-rich Low_complexity Low_complexity 1 346 0 1 1473 926 205 64 35 chr5 116449078 116449280 -36087979 - B3 SINE B2 -5 211 4 1 1473 2349 80 9 12 chr5 116449328 116449656 -36087603 - ORR1A2 LTR MaLR 0 327 1 1 1473 9307 137 65 5 chr5 116449656 116450525 -36086734 - ORR1A2-int LTR MaLR 0 1792 888 1 1473 1333 67 17 6 chr5 116450525 116450706 -36086553 - B2_Mm2 SINE B2 -9 186 4 1 1473 9307 137 65 5 chr5 116450706 116451526 -36085733 - ORR1A2-int LTR MaLR -905 887 3 1 1473 2204 69 74 16 chr5 116451526 116451835 -36085424 - ORR1A2 LTR MaLR 0 327 1 1 1473 2872 57 33 13 chr5 116452070 116452462 -36084797 - MTB LTR MaLR 0 400 1 1 1473 387 231 228 13 chr5 116452632 116452654 -36084605 + B3A SINE B2 2 37 -161 1 1473 180 0 0 0 chr5 116452654 116452674 -36084585 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1473 387 237 220 14 chr5 116452674 116452817 -36084442 + B3A SINE B2 38 206 -10 1 1473 308 282 27 18 chr5 116452906 116453018 -36084241 - L1MB7 LINE L1 -37 6147 6035 1 1473 245 300 25 0 chr5 116453448 116453528 -36083731 - ID4_ SINE ID 0 83 2 1 1473 372 153 40 256 chr5 116455362 116455469 -36081790 + B1F SINE Alu 5 90 -59 1 1473 1207 41 0 0 chr5 116455469 116455616 -36081643 - B1_Mm SINE Alu 0 147 1 1 1473 372 153 40 256 chr5 116455616 116455684 -36081575 + B1F SINE Alu 91 142 -7 1 1473 246 160 0 0 chr5 116456447 116456497 -36080762 + (CCCGG)n Simple_repeat Simple_repeat 2 51 0 1 1473 273 209 0 0 chr5 116456774 116456841 -36080418 + T-rich Low_complexity Low_complexity 1 67 0 1 1473 217 25 0 91 chr5 116457560 116457604 -36079655 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 1 1473 219 146 0 0 chr5 116458298 116458339 -36078920 + (CCCCCA)n Simple_repeat Simple_repeat 1 41 0 1 1473 279 0 0 0 chr5 116458924 116458955 -36078304 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1473 270 0 0 0 chr5 116460245 116460275 -36076984 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1473 796 272 52 25 chr5 116461035 116461321 -36075938 - MLT1A1 LTR MaLR -15 393 100 1 1473 803 152 0 7 chr5 116461321 116461467 -36075792 + CT-rich Low_complexity Low_complexity 3 147 0 1 1473 1066 128 6 0 chr5 116461469 116461641 -36075618 - B2_Mm1a SINE B2 -19 174 2 1 1473 835 37 0 0 chr5 116462249 116462358 -36074901 + B1_Mus2 SINE Alu 2 110 -37 1 1473 594 196 264 35 chr5 116462941 116463115 -36074144 - B3 SINE B2 -2 214 1 1 1473 634 299 83 29 chr5 116463133 116463374 -36073885 - B4A SINE B4 -38 254 1 1 1473 297 0 0 0 chr5 116465588 116465621 -36071638 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1473 574 258 31 12 chr5 116466568 116466729 -36070530 + MTE2a LTR MaLR 216 379 0 1 1473 437 170 138 0 chr5 116466738 116466832 -36070427 + L1MA8 LINE L1 5806 5912 -379 1 1473 207 100 0 0 chr5 116467178 116467208 -36070051 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1473 251 252 75 37 chr5 116467533 116467640 -36069619 + MLT1A0 LTR MaLR 17 127 -238 1 1473 191 36 36 0 chr5 116471014 116471042 -36066217 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1473 1220 20 0 7 chr5 116471046 116471194 -36066065 - B1_Mus1 SINE Alu 0 148 2 1 1473 1001 201 14 14 chr5 116472398 116472620 -36064639 - URR1A DNA MER1_type -4 222 1 1 1473 872 90 22 8 chr5 116472994 116473128 -36064131 - B1_Mus1 SINE Alu -11 137 2 1 1473 531 237 169 17 chr5 116474742 116474914 -36062345 + B3 SINE B2 19 216 0 1 1473 225 257 0 28 chr5 116474916 116474956 -36062303 + A-rich Low_complexity Low_complexity 1 39 0 1 1473 1144 41 7 0 chr5 116474956 116475102 -36062157 + B1_Mus1 SINE Alu 2 148 0 1 1473 225 257 0 28 chr5 116475102 116475133 -36062126 + A-rich Low_complexity Low_complexity 40 70 0 1 1473 795 149 7 47 chr5 116475632 116475780 -36061479 - B1_Mur4 SINE Alu -6 144 3 1 1473 348 195 80 11 chr5 116477054 116477142 -36060117 + RSINE1 SINE B4 4 97 -68 1 1473 195 42 0 0 chr5 116477258 116477282 -36059977 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1473 1127 68 0 0 chr5 116477282 116477429 -36059830 - B1_Mm SINE Alu 0 147 1 1 1473 1278 61 67 0 chr5 116477432 116477612 -36059647 - B2_Mm2 SINE B2 -3 192 1 1 1473 275 77 0 0 chr5 116477613 116477652 -36059607 - B2_Mm2 SINE B2 -156 39 1 1 1473 490 230 115 39 chr5 116477703 116477739 -36059520 + RLTR15 LTR ERVK 1 47 -312 1 1473 183 42 0 0 chr5 116477739 116477763 -36059496 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1 1473 490 230 115 39 chr5 116477763 116477934 -36059325 + RLTR15 LTR ERVK 48 223 -136 1 1473 654 233 10 62 chr5 116478257 116478449 -36058810 + B3A SINE B2 1 182 -16 1 1473 530 189 0 43 chr5 116478455 116478643 -36058616 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1473 278 281 12 0 chr5 116478658 116478740 -36058519 + (CA)n Simple_repeat Simple_repeat 1 83 0 1 1473 1379 59 37 5 chr5 116479854 116480041 -36057218 - B2_Mm2 SINE B2 0 195 3 1 1473 364 246 244 30 chr5 116480111 116480312 -36056947 - B4A SINE B4 0 292 49 1 1473 221 250 0 0 chr5 116480919 116480967 -36056292 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1473 264 212 62 12 chr5 116481086 116481167 -36056092 + RMER15 LTR ERVL 405 489 -86 1 1473 322 202 10 92 chr5 116481865 116481963 -36055296 - RSINE1 SINE B4 0 165 76 1 1473 2683 123 17 12 chr5 116481963 116482382 -36054877 + MTC LTR MaLR 1 421 0 1 1473 2967 63 2 2 chr5 116482404 116482804 -36054455 - MTB LTR MaLR 0 400 1 1 1473 5052 174 85 30 chr5 116482804 116483921 -36053338 + MTC-int LTR MaLR 19 1197 -61 1 1473 1076 69 14 0 chr5 116483978 116484123 -36053136 + B1_Mm SINE Alu 1 147 0 1 1473 234 0 0 0 chr5 116484123 116484149 -36053110 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1473 813 119 0 83 chr5 116484181 116484218 -36053041 + MTC LTR MaLR 1 36 -385 1 1473 3831 49 38 10 chr5 116484218 116484716 -36052543 + LTRIS3 LTR ERV1 1 512 0 1 1473 813 119 0 83 chr5 116484716 116484834 -36052425 + MTC LTR MaLR 37 143 -278 1 1473 239 358 12 0 chr5 116485263 116485344 -36051915 + MLT1D LTR MaLR 342 423 -82 1 1473 237 33 0 0 chr5 116485384 116485414 -36051845 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1473 318 256 103 116 chr5 116485552 116485707 -36051552 - MTEa LTR MaLR -222 157 5 1 1473 397 263 0 41 chr5 116485728 116485851 -36051408 - PB1D9 SINE Alu -1 119 2 1 1473 292 315 52 77 chr5 116487108 116487263 -36049996 + MLT1K LTR MaLR 5 155 -440 1 1473 533 205 11 33 chr5 116487265 116487447 -36049812 + G-rich Low_complexity Low_complexity 1 178 0 1 1473 503 264 70 23 chr5 116487846 116488017 -36049242 - MTE2b LTR MaLR -7 372 194 1 1473 225 0 0 0 chr5 116488040 116488065 -36049194 + (GGGGA)n Simple_repeat Simple_repeat 1 25 0 1 1473 361 95 32 0 chr5 116488065 116488128 -36049131 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1473 180 0 0 0 chr5 116488126 116488146 -36049113 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1 1473 376 255 134 134 chr5 116488158 116488344 -36048915 - MTE2b LTR MaLR -189 190 5 1 1473 197 33 33 0 chr5 116488708 116488738 -36048521 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 1 1473 418 246 118 0 chr5 116489252 116489362 -36047897 + ID_B1 SINE B4 84 206 -18 1 1473 189 0 0 0 chr5 116489569 116489590 -36047669 + (TCTG)n Simple_repeat Simple_repeat 4 24 0 1 1473 570 340 90 27 chr5 116489594 116489893 -36047366 - MER113 DNA MER1_type -198 323 6 1 1473 255 61 0 0 chr5 116489964 116489997 -36047262 + (CGGGGG)n Simple_repeat Simple_repeat 3 35 0 1 1473 398 285 153 29 chr5 116490966 116491136 -36046123 - MER2 DNA MER2_type -40 305 115 1 1473 324 145 76 38 chr5 116491129 116491208 -36046051 + RLTR25B LTR ERVK 428 509 -519 1 1473 690 69 0 29 chr5 116491147 116491239 -36046020 + B1_Mus2 SINE Alu 44 134 -13 1 1473 351 0 0 0 chr5 116491239 116491278 -36045981 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1473 690 69 0 29 chr5 116491278 116491289 -36045970 + B1_Mus2 SINE Alu 135 144 -3 1 1473 391 264 44 0 chr5 116491448 116491539 -36045720 - PB1D7 SINE Alu -5 115 21 1 1473 258 399 56 0 chr5 116492343 116492486 -36044773 + MER21B LTR ERV1 20 170 -693 1 1473 891 62 82 30 chr5 116492554 116492688 -36044571 - B1_Mm SINE Alu -6 141 1 1 1473 1506 22 22 0 chr5 116492731 116492910 -36044349 - B2_Mm1a SINE B2 -9 184 2 1 1473 291 289 147 17 chr5 116492927 116493043 -36044216 + MER21B LTR ERV1 210 340 -523 1 1473 239 309 92 38 chr5 116493296 116493427 -36043832 + MER21B LTR ERV1 721 858 -5 1 1473 405 0 0 0 chr5 116493573 116493618 -36043641 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1 1473 1211 63 0 0 chr5 116493619 116493777 -36043482 - B2_Mm2 SINE B2 -37 158 1 1 1473 273 319 0 0 chr5 116494394 116494466 -36042793 - ID4_ SINE ID -1 82 11 1 1473 1442 48 37 0 chr5 116494505 116494693 -36042566 - B2_Mm2 SINE B2 0 195 1 1 1473 571 260 96 23 chr5 116494710 116494887 -36042372 - B3A SINE B2 -1 197 8 1 1473 1012 225 9 9 chr5 116494916 116495131 -36042128 - B3 SINE B2 0 216 2 1 1473 378 204 83 90 chr5 116495143 116495214 -36042045 - B1_Mur2 SINE Alu -1 148 73 1 1473 1118 85 85 0 chr5 116495214 116495391 -36041868 + B2_Mm1a SINE B2 2 193 0 1 1473 378 204 83 90 chr5 116495391 116495464 -36041795 - B1_Mur2 SINE Alu -77 72 6 1 1473 298 150 0 77 chr5 116495409 116495474 -36041785 - ID_B1 SINE B4 -87 137 78 1 1473 24 0 0 0 chr5 116496131 116496155 -36041104 + AT_rich Low_complexity Low_complexity 1 24 0 1 1473 474 266 94 0 chr5 116496409 116496537 -36040722 - B1F SINE Alu -5 144 5 1 1473 662 220 22 38 chr5 116496842 116497026 -36040233 - B3A SINE B2 -16 182 2 1 1473 2200 95 13 0 chr5 116497147 116497462 -36039797 + ORR1A2 LTR MaLR 1 319 -8 1 1473 291 291 437 22 chr5 116497837 116497982 -36039277 + B4A SINE B4 29 234 -58 1 1473 1225 106 11 0 chr5 116497982 116498170 -36039089 + B2_Mm1t SINE B2 2 191 -2 1 1473 265 274 11 67 chr5 116498170 116498212 -36039047 + B4A SINE B4 235 273 -19 1 1473 474 120 0 0 chr5 116498237 116498312 -36038947 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1473 235 313 37 0 chr5 116498361 116498443 -36038816 + MIRc SINE MIR 58 142 -126 1 1473 203 302 217 0 chr5 116498846 116498952 -36038307 - MIR SINE MIR -126 136 8 1 1473 426 247 0 0 chr5 116498964 116499049 -36038210 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1473 475 226 6 33 chr5 116499055 116499238 -36038021 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1 1473 474 284 8 0 chr5 116499248 116499375 -36037884 + (CA)n Simple_repeat Simple_repeat 1 128 0 1 1473 283 308 21 27 chr5 116499375 116499562 -36037697 - RLTR21 LTR ERVK -318 1254 1069 1 1473 457 319 41 7 chr5 116500516 116500661 -36036598 + MER58A DNA MER1_type 42 191 -33 1 1473 846 81 0 0 chr5 116501170 116501281 -36035978 - B1_Mus1 SINE Alu 0 148 38 2 1473 341 273 0 54 chr5 116501205 116501298 -36035961 - MT2B LTR ERVL -337 264 177 3 1473 1474 78 16 0 chr5 116501555 116501747 -36035512 - B2_Mm2 SINE B2 0 195 1 4 1473 1200 61 0 0 chr5 116501772 116501920 -36035339 - B1_Mus1 SINE Alu 0 148 1 5 1473 488 349 52 21 chr5 116502238 116502431 -36034828 + MER58A DNA MER1_type 10 208 -16 6 1473 982 51 69 55 chr5 116502520 116502665 -36034594 - B1_Mus1 SINE Alu 0 148 2 7 1473 236 0 0 0 chr5 116502668 116502699 -36034560 - B3 SINE B2 -185 31 1 8 1473 276 324 5 54 chr5 116503561 116503799 -36033460 + G-rich Low_complexity Low_complexity 1 226 0 9 1473 300 233 75 32 chr5 116504227 116504320 -36032939 - MTEa LTR MaLR 0 379 283 1 1473 491 246 25 8 chr5 116504825 116504944 -36032315 - RSINE1 SINE B4 -44 121 1 1 1473 971 165 11 7 chr5 116505805 116506086 -36031173 + CT-rich Low_complexity Low_complexity 1 282 0 1 1473 1131 56 28 0 chr5 116506087 116506230 -36031029 - B1_Mm SINE Alu 0 147 1 1 1473 195 114 0 0 chr5 116506416 116506451 -36030808 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1 1473 189 330 59 49 chr5 116506748 116506850 -36030409 - MIR SINE MIR -81 181 79 1 1473 345 141 0 0 chr5 116506870 116506941 -36030318 + (TCTCTG)n Simple_repeat Simple_repeat 6 76 0 1 1473 477 240 17 2 chr5 116507143 116507285 -36029974 - PB1D10 SINE Alu -2 147 1 1 1473 263 200 0 39 chr5 116507249 116507301 -36029958 - MT2B2 LTR ERVL -291 293 244 1 1473 450 0 0 0 chr5 116507301 116507351 -36029908 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1 1473 715 233 57 0 chr5 116507380 116507539 -36029720 - B4 SINE B4 0 292 125 2 1473 286 309 29 87 chr5 116508491 116508629 -36028630 + MER5B DNA MER1_type 1 130 -48 2 1473 456 235 126 10 chr5 116508626 116508729 -36028530 - PB1D10 SINE Alu 0 117 3 2 1473 222 374 0 42 chr5 116508729 116508764 -36028495 - B4 SINE B4 -206 86 56 2 1473 228 67 0 0 chr5 116508805 116508835 -36028424 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 2 1473 260 196 71 0 chr5 116508864 116508920 -36028339 - L2a LINE L2 -94 3332 3273 2 1473 387 0 0 0 chr5 116509550 116509593 -36027666 + (CCA)n Simple_repeat Simple_repeat 3 45 0 2 1473 352 207 11 45 chr5 116509822 116509999 -36027260 + G-rich Low_complexity Low_complexity 3 173 0 2 1473 414 39 0 0 chr5 116510079 116510131 -36027128 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 1473 418 270 118 82 chr5 116510175 116510445 -36026814 - B4A SINE B4 -12 280 1 2 1473 525 250 77 45 chr5 116510465 116510620 -36026639 - B3 SINE B2 0 216 57 3 1473 826 91 99 0 chr5 116510648 116510769 -36026490 - B1_Mus1 SINE Alu -10 138 6 3 1473 351 135 0 0 chr5 116510773 116510825 -36026434 - B3A SINE B2 -146 52 1 3 1473 361 287 0 42 chr5 116511007 116511127 -36026132 - PB1D10 SINE Alu -2 115 1 3 1473 314 207 35 160 chr5 116511207 116511351 -36025908 - HAL1-3A_ME LINE L1 -758 2100 1975 3 1473 267 272 0 0 chr5 116511355 116511447 -36025812 + (TG)n Simple_repeat Simple_repeat 1 92 0 3 1473 674 326 44 53 chr5 116511496 116511908 -36025351 - Lx8 LINE L1 -208 7265 6858 3 1473 674 174 67 22 chr5 116511948 116512083 -36025176 - B3 SINE B2 -10 206 66 3 1473 335 262 0 12 chr5 116512031 116512112 -36025147 - B1_Mur3 SINE Alu -69 80 1 3 1473 181 83 0 53 chr5 116512806 116512844 -36024415 + (GGA)n Simple_repeat Simple_repeat 3 38 0 3 1473 241 303 29 29 chr5 116513009 116513077 -36024182 - ID4 SINE ID -14 69 2 4 1473 462 36 0 0 chr5 116513388 116513444 -36023815 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 4 1473 748 228 70 23 chr5 116513458 116513629 -36023630 - B3A SINE B2 -18 180 2 4 1473 474 271 20 127 chr5 116513645 116513890 -36023369 - ID_B1 SINE B4 -1 223 5 4 1473 336 271 57 71 chr5 116514109 116514263 -36022996 - L2b LINE L2 -1 3425 3263 4 1473 506 277 0 0 chr5 116514263 116514382 -36022877 + PB1 SINE Alu 1 119 -8 4 1473 282 289 69 96 chr5 116514382 116514445 -36022814 - L2b LINE L2 -141 3285 3214 4 1473 192 150 49 16 chr5 116514988 116515049 -36022210 + GA-rich Low_complexity Low_complexity 3 65 0 4 1473 755 259 126 35 chr5 116515162 116515624 -36021635 + L1MB5 LINE L1 5211 5713 -465 4 1473 586 304 107 69 chr5 116515678 116515968 -36021291 - ORR1E LTR MaLR -53 306 6 4 1473 1151 36 0 41 chr5 116516020 116516165 -36021094 + B1_Mus2 SINE Alu 1 139 -8 4 1473 318 296 80 25 chr5 116516243 116516406 -36020853 + L1MB5 LINE L1 5842 6013 -161 4 1473 523 275 155 0 chr5 116516503 116516696 -36020563 - Lx8 LINE L1 -98 7375 7153 5 1473 411 226 29 88 chr5 116516698 116516800 -36020459 - B1F SINE Alu -51 96 1 5 1473 432 231 65 0 chr5 116516883 116516991 -36020268 - PB1D7 SINE Alu -5 115 1 5 1473 836 236 180 24 chr5 116517311 116517668 -36019591 - MTE2b LTR MaLR -2 377 1 5 1473 848 295 65 24 chr5 116517926 116518314 -36018945 + Lx8 LINE L1 6922 7331 -142 5 1473 186 43 0 0 chr5 116518314 116518337 -36018922 + (GGA)n Simple_repeat Simple_repeat 2 24 0 5 1473 848 289 66 25 chr5 116518337 116518410 -36018849 + Lx8 LINE L1 7332 7414 -59 5 1473 413 180 0 11 chr5 116518424 116518514 -36018745 + GA-rich Low_complexity Low_complexity 3 91 0 5 1473 24 85 0 0 chr5 116518573 116518632 -36018627 + AT_rich Low_complexity Low_complexity 1 59 0 5 1473 183 231 51 0 chr5 116518661 116518700 -36018559 - MIRm SINE MIR -13 263 223 5 1473 21 0 0 0 chr5 116518778 116518799 -36018460 + AT_rich Low_complexity Low_complexity 1 21 0 5 1473 215 286 16 0 chr5 116518878 116518963 -36018296 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 1473 552 324 63 34 chr5 116518967 116519235 -36018024 - B4A SINE B4 -14 278 3 6 1473 3509 18 8 0 chr5 116519318 116519711 -36017548 - MTA_Mm LTR MaLR 0 396 1 6 1473 301 296 63 16 chr5 116519733 116519860 -36017399 - RSINE1 SINE B4 0 165 33 6 1473 194 98 0 73 chr5 116520045 116520100 -36017159 + CT-rich Low_complexity Low_complexity 1 51 0 6 1473 513 0 0 0 chr5 116520699 116520756 -36016503 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1473 248 0 31 0 chr5 116520764 116520796 -36016463 + (GGGTG)n Simple_repeat Simple_repeat 3 35 0 6 1473 772 163 0 75 chr5 116522124 116522270 -36014989 - B1_Mur2 SINE Alu -1 148 14 6 1473 555 16 0 0 chr5 116522285 116522349 -36014910 + (TG)n Simple_repeat Simple_repeat 2 65 0 6 1473 261 146 0 0 chr5 116522349 116522390 -36014869 - B1_Mur2 SINE Alu -10 139 99 6 184 532 330 59 76 chr5 116522728 116523069 -36014190 - ORR1E LTR MaLR 0 359 25 7 1474 368 301 75 103 chr5 116523120 116523654 -36013605 - HAL1 LINE L1 -757 1750 1232 7 1474 648 322 70 27 chr5 116523745 116524118 -36013141 - L1MB3 LINE L1 0 6183 5795 7 1474 23 0 0 0 chr5 116524161 116524184 -36013075 + AT_rich Low_complexity Low_complexity 1 23 0 7 1474 366 224 118 27 chr5 116524285 116524395 -36012864 - RSINE1 SINE B4 -37 128 9 7 1474 886 281 82 43 chr5 116524755 116524847 -36012412 + MTE2b LTR MaLR 19 107 -272 7 1474 2222 136 52 113 chr5 116524847 116525234 -36012025 + RMER4A LTR ERVK 1 369 -97 7 1474 207 0 0 0 chr5 116525234 116525257 -36012002 + (TG)n Simple_repeat Simple_repeat 2 24 0 7 1474 2222 136 52 113 chr5 116525257 116525365 -36011894 + RMER4A LTR ERVK 370 466 0 7 1474 886 281 82 43 chr5 116525365 116525554 -36011705 + MTE2b LTR MaLR 108 311 -68 7 1474 246 95 0 0 chr5 116525904 116525946 -36011313 + (T)n Simple_repeat Simple_repeat 1 42 0 7 1474 1147 50 43 0 chr5 116525947 116526087 -36011172 - B1_Mm SINE Alu -1 146 1 7 1474 607 266 95 5 chr5 116526099 116526288 -36010971 - B3 SINE B2 -10 206 1 8 1474 317 324 46 0 chr5 116526815 116526923 -36010336 + HAL1-2a_MD LINE L1 2350 2462 -562 8 1474 195 69 0 0 chr5 116527028 116527057 -36010202 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1474 600 50 0 0 chr5 116527420 116527500 -36009759 + (GA)n Simple_repeat Simple_repeat 1 80 0 8 1474 488 331 14 29 chr5 116527664 116527804 -36009455 + MER91A DNA Tip100 57 194 -2 8 1474 282 200 0 48 chr5 116527884 116527947 -36009312 + RMER15 LTR ERVL 368 427 -148 8 1474 552 239 83 14 chr5 116527947 116528091 -36009168 + RMER15 LTR ERVL 389 542 -33 8 1474 976 105 28 14 chr5 116528104 116528249 -36009010 - B1_Mus1 SINE Alu 0 148 2 8 1474 1115 219 193 6 chr5 116528737 116529063 -36008196 + MTD LTR MaLR 19 405 -14 8 1474 357 241 12 24 chr5 116529110 116529195 -36008064 + MTD LTR MaLR 336 419 0 8 1474 268 327 115 0 chr5 116529495 116529608 -36007651 + MLT1A0 LTR MaLR 4 129 -279 8 1474 390 276 19 9 chr5 116530130 116530236 -36007023 + PB1D10 SINE Alu 3 109 -8 9 1474 601 233 13 33 chr5 116530294 116530445 -36006814 + RSINE1 SINE B4 1 148 -17 9 1474 233 29 0 29 chr5 116530589 116530624 -36006635 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 9 1474 207 0 0 0 chr5 116530624 116530647 -36006612 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1474 300 302 92 8 chr5 116531332 116531452 -36005807 + RSINE1 SINE B4 10 139 -26 9 1474 399 347 65 15 chr5 116531615 116531814 -36005445 - MIRb SINE MIR -11 257 49 9 1474 228 163 0 23 chr5 116533333 116533377 -36003882 + GA-rich Low_complexity Low_complexity 3 45 0 9 1474 524 189 24 0 chr5 116533954 116534067 -36003192 - B2_Mm2 SINE B2 -93 123 2 9 1474 450 0 0 0 chr5 116534280 116534330 -36002929 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1474 702 236 5 33 chr5 116534331 116534515 -36002744 - B3A SINE B2 -16 182 4 9 1474 1003 198 62 58 chr5 116535100 116535357 -36001902 - Lx5 LINE L1 0 7050 6793 1 1474 575 209 65 119 chr5 116535815 116536016 -36001243 - B3A SINE B2 -3 213 24 1 1474 289 320 0 10 chr5 116536513 116536611 -36000648 + GA-rich Low_complexity Low_complexity 1 97 0 1 1474 284 309 114 12 chr5 116537169 116537336 -35999923 - MIRb SINE MIR -21 247 64 1 1474 1081 95 0 0 chr5 116537570 116537717 -35999542 - B1_Mm SINE Alu 0 147 1 1 1474 333 0 0 0 chr5 116538032 116538069 -35999190 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1474 24 0 0 0 chr5 116538340 116538364 -35998895 + AT_rich Low_complexity Low_complexity 1 24 0 1 1474 709 296 25 5 chr5 116538555 116538759 -35998500 + MTD LTR MaLR 18 225 -194 1 1474 1102 252 25 47 chr5 116538754 116539141 -35998118 + RLTR11A LTR ERVK 144 528 0 1 1474 380 220 256 8 chr5 116539146 116539279 -35997980 - Lx8 LINE L1 -269 7204 7039 1 1474 1614 249 184 2 chr5 116539277 116539751 -35997508 - Lx8 LINE L1 -554 6919 6360 1 1474 230 343 80 10 chr5 116540388 116540488 -35996771 + L2a LINE L2 3314 3420 -6 1 1474 489 184 120 26 chr5 116540508 116540625 -35996634 + MTD LTR MaLR 18 145 -274 1 1474 2030 174 26 54 chr5 116540605 116540993 -35996266 + ORR1C2 LTR MaLR 6 382 -2 1 1474 1150 233 73 22 chr5 116540993 116541256 -35996003 + MTD LTR MaLR 129 405 -14 1 1474 684 115 0 0 chr5 116543007 116543111 -35994148 + (GA)n Simple_repeat Simple_repeat 2 105 0 1 1474 576 293 6 3 chr5 116543419 116543736 -35993523 + (TG)n Simple_repeat Simple_repeat 1 318 0 1 1474 264 339 135 94 chr5 116543737 116543981 -35993278 - B4A SINE B4 0 292 39 1 1474 896 63 91 45 chr5 116544049 116544181 -35993078 + B1_Mus2 SINE Alu 1 138 -9 1 1474 432 0 0 0 chr5 116544181 116544229 -35993030 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 1474 403 261 148 33 chr5 116544287 116544469 -35992790 - MER20 DNA MER1_type 0 219 17 1 1474 512 121 11 0 chr5 116545418 116545509 -35991750 + (TTTC)n Simple_repeat Simple_repeat 3 94 0 1 1474 734 181 17 11 chr5 116545533 116545712 -35991547 + CT-rich Low_complexity Low_complexity 1 180 0 1 1474 421 262 49 0 chr5 116545723 116545845 -35991414 - B1F1 SINE Alu -11 138 11 1 1474 181 328 0 108 chr5 116546411 116546430 -35990829 + MIRc SINE MIR 94 106 -162 1 1474 2582 132 59 144 chr5 116546430 116547007 -35990252 - RLTR11A LTR ERVK 0 528 1 1 1474 181 328 0 108 chr5 116547007 116547052 -35990207 + MIRc SINE MIR 107 151 -117 1 1474 2098 128 22 12 chr5 116547059 116547484 -35989775 + ORR1A3 LTR MaLR 1 394 0 1 1474 278 274 22 13 chr5 116547501 116547591 -35989668 + MIRb SINE MIR 167 260 -2 1 1474 197 379 99 38 chr5 116547878 116548221 -35989038 + L2c LINE L2 3023 3386 -1 1 1474 414 309 0 0 chr5 116548344 116548454 -35988805 - PB1D9 SINE Alu -6 114 5 1 1474 1566 208 152 14 chr5 116548690 116549046 -35988213 + MTD LTR MaLR 15 419 0 1 1474 267 318 23 12 chr5 116549416 116549502 -35987757 + ORR1E LTR MaLR 268 354 -5 1 1474 287 216 34 57 chr5 116549776 116549953 -35987306 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 1 1474 240 196 14 34 chr5 116549975 116550123 -35987136 + (TATAA)n Simple_repeat Simple_repeat 4 148 0 1 1474 892 236 162 60 chr5 116550233 116550585 -35986674 + MLT1B LTR MaLR 3 390 0 1 1474 1119 207 9 0 chr5 116551542 116551755 -35985504 + B3 SINE B2 2 216 0 1 1474 314 276 49 81 chr5 116551783 116551983 -35985276 - L1MDa LINE L1 -3840 2697 2486 1 1474 1258 27 7 0 chr5 116551983 116552129 -35985130 - B1_Mus2 SINE Alu 0 147 1 1 1474 302 270 46 105 chr5 116552129 116552313 -35984946 - L1MDa LINE L1 -4148 2485 2324 1 1474 244 281 0 0 chr5 116552330 116552387 -35984872 - Tigger5 DNA MER2_type -28 2378 2322 1 1474 233 290 100 0 chr5 116552421 116552521 -35984738 + PB1 SINE Alu 1 110 -17 1 1474 461 292 78 87 chr5 116552547 116553646 -35983613 - Lx8 LINE L1 -2456 3690 2610 1 1474 364 332 27 88 chr5 116553668 116553958 -35983301 - Lx8 LINE L1 -3610 2536 2255 1 1474 914 201 70 10 chr5 116554013 116554214 -35983045 - B3 SINE B2 -2 214 2 1 1474 487 313 0 0 chr5 116554214 116554345 -35982914 - ID_B1 SINE B4 -7 217 87 1 1474 1257 170 19 5 chr5 116554409 116554622 -35982637 - B3 SINE B2 0 216 1 1 1474 1323 106 32 0 chr5 116554671 116554860 -35982399 - B2_Mm2 SINE B2 0 195 1 1 1474 310 149 44 15 chr5 116555384 116555452 -35981807 + HAL1-3A_ME LINE L1 1958 2027 -831 1 1474 726 157 0 0 chr5 116555461 116555708 -35981551 + (CA)n Simple_repeat Simple_repeat 1 247 0 1 1474 602 146 0 24 chr5 116555727 116555853 -35981406 + Lx9 LINE L1 7519 7641 -3 1 1474 1192 221 117 28 chr5 116556033 116556358 -35980901 + BGLII_B LTR ERVK 87 440 -1 1 1474 271 264 28 0 chr5 116556594 116556666 -35980593 - PB1D10 SINE Alu -32 85 12 1 1474 308 247 82 92 chr5 116556772 116556870 -35980389 - L1M4b LINE L1 -5493 1841 1745 1 1474 352 322 47 25 chr5 116556890 116557164 -35980095 - Lx8 LINE L1 -4534 1632 1353 1 1474 192 77 0 0 chr5 116557233 116557259 -35980000 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1474 874 256 50 32 chr5 116557259 116557537 -35979722 - Lx5 LINE L1 -19 7031 6749 1 1474 474 298 74 9 chr5 116557540 116557770 -35979489 + Lx8 LINE L1 7149 7393 -80 1 1474 447 202 37 133 chr5 116557827 116557989 -35979270 + B3A SINE B2 2 147 -48 1 1474 305 300 77 87 chr5 116558304 116558586 -35978673 - MTEb LTR MaLR -1 378 83 1 1474 381 75 0 0 chr5 116559238 116559291 -35977968 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1474 755 268 188 0 chr5 116559297 116559521 -35977738 - B4 SINE B4 -26 266 1 1 1474 454 304 184 63 chr5 116559790 116560086 -35977173 + MER58B DNA MER1_type 4 335 -6 1 1474 1099 181 29 24 chr5 116560192 116560401 -35976858 - B3 SINE B2 0 216 7 1 1474 586 219 48 0 chr5 116560898 116561003 -35976256 - 5S rRNA rRNA -10 111 2 1 1474 302 259 48 36 chr5 116561005 116561089 -35976170 - HAL1-3A_ME LINE L1 -799 2059 1975 1 1474 234 128 0 0 chr5 116561091 116561130 -35976129 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1474 644 253 58 23 chr5 116561135 116561309 -35975950 - B3A SINE B2 -16 182 3 1 1474 249 324 54 54 chr5 116561918 116562029 -35975230 + MamSINE1 SINE tRNA 28 138 -152 1 1474 205 152 0 0 chr5 116562358 116562391 -35974868 + (TGG)n Simple_repeat Simple_repeat 1 33 0 1 1474 771 200 0 46 chr5 116562495 116562647 -35974612 + B1_Mur4 SINE Alu 6 150 0 1 1474 297 89 0 0 chr5 116562669 116562714 -35974545 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 1 1474 2103 91 29 16 chr5 116562958 116563271 -35973988 + L1_Mus3 LINE L1 6308 6624 -14 1 1474 618 258 0 0 chr5 116563542 116563666 -35973593 - ID_B1 SINE B4 -1 223 100 1 1474 543 345 107 9 chr5 116563702 116564124 -35973135 - L1MA6 LINE L1 -216 6084 5622 1 1474 405 0 0 0 chr5 116564394 116564439 -35972820 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1474 180 0 0 0 chr5 116564609 116564629 -35972630 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1 1474 1222 83 0 0 chr5 116564630 116564787 -35972472 - B2_Mm2 SINE B2 -37 158 2 1 1474 269 226 0 16 chr5 116564788 116564851 -35972408 - L1M1 LINE L1 -697 5606 5545 1 1474 279 173 0 0 chr5 116564895 116564947 -35972312 + (TATG)n Simple_repeat Simple_repeat 4 55 0 1 1474 275 353 12 82 chr5 116565672 116565842 -35971417 + MER5B DNA MER1_type 5 162 -16 1 1474 284 311 39 33 chr5 116565855 116566008 -35971251 - MIRb SINE MIR -76 192 39 1 1474 225 139 0 0 chr5 116566078 116566121 -35971138 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1 1474 1061 242 103 15 chr5 116566750 116567063 -35970196 + ORR1E LTR MaLR 8 373 -6 1 1474 1536 22 0 0 chr5 116567477 116567657 -35969602 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1474 800 169 11 11 chr5 116567657 116567837 -35969422 + CT-rich Low_complexity Low_complexity 1 180 0 1 1474 234 346 50 0 chr5 116567841 116567942 -35969317 - MLT1K LTR MaLR 0 595 490 1 1474 418 169 35 24 chr5 116568028 116568113 -35969146 - PB1D7 SINE Alu -4 116 31 1 1474 252 300 62 0 chr5 116568191 116568271 -35968988 - MLT1K LTR MaLR -373 222 138 1 1474 968 139 0 11 chr5 116568296 116568478 -35968781 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1474 1857 229 129 15 chr5 116568518 116568992 -35968267 + MT2A LTR ERVL 2 529 -4 1 1474 243 125 0 0 chr5 116569345 116569385 -35967874 + (CACCAT)n Simple_repeat Simple_repeat 5 44 0 1 1474 504 0 0 0 chr5 116569556 116569612 -35967647 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 1 1474 1193 107 3 0 chr5 116569624 116569962 -35967297 + (TTC)n Simple_repeat Simple_repeat 1 339 0 1 1474 200 309 71 97 chr5 116570096 116570250 -35967009 - MIR3 SINE MIR -58 150 1 1 1474 212 331 62 37 chr5 116570304 116570427 -35966832 + MIR SINE MIR 40 168 -108 1 1474 397 319 15 25 chr5 116570473 116570664 -35966595 + Lx8 LINE L1 7113 7375 -269 1 1474 905 122 8 11 chr5 116570748 116571111 -35966148 + (TATG)n Simple_repeat Simple_repeat 1 361 0 1 1474 333 0 0 0 chr5 116571111 116571148 -35966111 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 1 1474 261 83 0 0 chr5 116571245 116571281 -35965978 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1474 605 243 137 14 chr5 116571967 116572113 -35965146 - RSINE1 SINE B4 0 165 2 1 1474 970 178 4 191 chr5 116572263 116572541 -35964718 + URR1A DNA MER1_type 1 226 0 1 1474 363 229 83 99 chr5 116572974 116573095 -35964164 + MT2B LTR ERVL 143 261 -340 1 1474 545 243 0 27 chr5 116572987 116573097 -35964162 + ID_B1 SINE B4 82 188 -36 1 1474 710 247 35 35 chr5 116574094 116574291 -35962968 + B4A SINE B4 35 231 -61 1 1474 1020 269 159 15 chr5 116574293 116574633 -35962626 + MTD LTR MaLR 3 391 -28 1 1474 299 179 0 0 chr5 116574658 116574718 -35962541 - B1_Mur1 SINE Alu 0 149 61 1 1474 225 213 79 32 chr5 116574672 116574735 -35962524 - MT2B LTR ERVL -369 232 167 1 1474 246 180 28 141 chr5 116574777 116574848 -35962411 + B4A SINE B4 230 292 0 1 1474 303 278 0 0 chr5 116574848 116574974 -35962285 + (CA)n Simple_repeat Simple_repeat 1 126 0 1 1474 648 233 0 0 chr5 116575394 116575566 -35961693 + (TCCA)n Simple_repeat Simple_repeat 3 174 0 2 1474 625 314 178 63 chr5 116576335 116577045 -35960214 + MMAR1 DNA Mariner 1 791 -495 2 1474 22 0 0 0 chr5 116577045 116577067 -35960192 + GC_rich Low_complexity Low_complexity 1 22 0 2 1474 443 330 0 0 chr5 116577071 116577177 -35960082 + B3 SINE B2 111 216 0 2 1474 342 0 0 0 chr5 116577179 116577217 -35960042 + (GA)n Simple_repeat Simple_repeat 1 38 0 2 1474 767 282 181 61 chr5 116577240 116577716 -35959543 + MT2A LTR ERVL 1 533 0 2 1474 863 345 13 13 chr5 116577842 116578142 -35959117 + MMAR1 DNA Mariner 987 1286 0 2 1474 682 303 6 11 chr5 116579185 116579362 -35957897 + B3A SINE B2 23 198 0 2 1474 1557 117 5 5 chr5 116579375 116579599 -35957660 - URR1B DNA MER1_type 0 225 2 2 1474 622 304 38 14 chr5 116579599 116579809 -35957450 + B3 SINE B2 2 216 0 2 1474 1096 46 0 8 chr5 116579881 116580012 -35957247 + B1_Mus2 SINE Alu 5 134 -13 2 1474 286 314 74 33 chr5 116580104 116580226 -35957033 - PB1 SINE Alu 0 127 1 2 1474 184 250 66 33 chr5 116580364 116580455 -35956804 + L2b LINE L2 2958 3051 -368 2 1474 241 281 104 32 chr5 116580653 116580778 -35956481 - MER5A1 DNA MER1_type -21 145 12 2 1474 198 0 0 0 chr5 116581662 116581684 -35955575 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1474 358 260 19 37 chr5 116581905 116582013 -35955246 + RSINE1 SINE B4 32 137 -28 2 1474 183 269 0 71 chr5 116582248 116582304 -35954955 + L2b LINE L2 3310 3361 -14 2 1474 450 0 0 0 chr5 116582551 116582601 -35954658 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1474 206 336 116 7 chr5 116582920 116583058 -35954201 + MIRb SINE MIR 41 193 -75 2 1474 692 217 65 0 chr5 116583246 116583384 -35953875 - B1_Mur1 SINE Alu -1 148 2 2 1474 513 0 0 0 chr5 116583708 116583765 -35953494 + (TC)n Simple_repeat Simple_repeat 2 58 0 2 1474 223 167 0 0 chr5 116583880 116583922 -35953337 + G-rich Low_complexity Low_complexity 1 42 0 2 1474 327 25 0 0 chr5 116585158 116585198 -35952061 + (TC)n Simple_repeat Simple_repeat 1 40 0 2 1474 204 135 0 0 chr5 116585601 116585638 -35951621 + (TCC)n Simple_repeat Simple_repeat 2 38 0 2 1474 608 182 23 0 chr5 116585652 116585828 -35951431 + CT-rich Low_complexity Low_complexity 1 180 0 2 1474 448 234 15 15 chr5 116585870 116586135 -35951124 + CT-rich Low_complexity Low_complexity 1 265 0 2 1474 1206 216 38 35 chr5 116587541 116587952 -35949307 + MT2A LTR ERVL 9 466 -67 2 1474 771 200 0 7 chr5 116588021 116588162 -35949097 - B1_Mur1 SINE Alu -8 141 2 2 1474 191 170 38 0 chr5 116588711 116588764 -35948495 - L2 LINE L2 -339 3080 3026 2 1474 915 152 77 36 chr5 116589093 116589485 -35947774 + RMER17C LTR ERVK 1 474 -335 2 1474 227 29 0 54 chr5 116589485 116589522 -35947737 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 2 1474 518 216 20 51 chr5 116589522 116589636 -35947623 + RMER17C LTR ERVK 220 329 -81 2 1474 1060 111 0 12 chr5 116589662 116589835 -35947424 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 2 1474 266 330 26 26 chr5 116589911 116590026 -35947233 + Charlie4a DNA MER1_type 193 307 -201 2 1474 198 0 0 0 chr5 116590738 116590760 -35946499 + (CCCCCA)n Simple_repeat Simple_repeat 1 22 0 2 1474 429 20 0 0 chr5 116591129 116591179 -35946080 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1474 424 195 4 100 chr5 116591384 116591949 -35945310 + (CTCA)n Simple_repeat Simple_repeat 1 510 0 2 1474 226 290 145 0 chr5 116592159 116592228 -35945031 - MER5A DNA MER1_type -33 156 78 2 1474 1776 195 67 23 chr5 116592660 116593048 -35944211 + MTD LTR MaLR 1 405 -14 2 1474 182 308 0 19 chr5 116593656 116593709 -35943550 - MIR SINE MIR -63 145 94 2 1474 229 275 29 137 chr5 116594519 116594658 -35942601 - MT2B2 LTR ERVL -292 292 169 2 1474 488 204 54 0 chr5 116594557 116594650 -35942609 - PB1D10 SINE Alu -7 110 13 2 1474 410 268 156 137 chr5 116594650 116594769 -35942490 - ID_B1 SINE B4 -7 217 2 2 1474 253 262 69 35 chr5 116595020 116595107 -35942152 - RLTR16 LTR ERVK -58 447 358 2 1474 618 243 14 7 chr5 116595137 116595282 -35941977 - RLTR16 LTR ERVK -358 147 2 2 1474 983 279 56 56 chr5 116595388 116595745 -35941514 - Lx8 LINE L1 -329 7144 6788 2 1474 362 374 60 18 chr5 116595881 116596047 -35941212 + MIRb SINE MIR 59 231 -37 2 1474 3034 43 25 102 chr5 116596377 116596816 -35940443 - MTB_Mm LTR MaLR 0 407 3 2 1474 207 0 0 0 chr5 116596934 116596957 -35940302 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2 1474 4444 16 2 0 chr5 116597058 116597550 -35939709 - MT2_Mm LTR ERVL 0 493 1 2 1474 305 0 0 0 chr5 116597550 116597588 -35939671 - MERVL-int LTR ERVL 0 5485 5448 2 1474 399 167 46 35 chr5 116597588 116597675 -35939584 - ORR1A3-int LTR MaLR -1323 640 553 2 1474 46011 16 6 0 chr5 116597675 116603001 -35934258 - MERVL-int LTR ERVL -125 5360 1 2 1474 4444 16 2 0 chr5 116603001 116603493 -35933766 - MT2_Mm LTR ERVL 0 493 1 2 1474 667 248 108 14 chr5 116603493 116603706 -35933553 - B4A SINE B4 -59 233 1 2 1474 303 286 155 63 chr5 116604425 116604567 -35932692 + MLT1C LTR MaLR 7 161 -229 2 1474 491 0 0 17 chr5 116604567 116604627 -35932632 + (GGA)n Simple_repeat Simple_repeat 1 59 0 2 1474 211 216 0 0 chr5 116605216 116605267 -35931992 + T-rich Low_complexity Low_complexity 1 51 0 2 1474 366 269 14 103 chr5 116606039 116606184 -35931075 - B4A SINE B4 -120 172 41 2 1474 322 263 29 69 chr5 116606606 116606708 -35930551 + PB1D10 SINE Alu 4 101 -48 2 1474 991 108 121 0 chr5 116606837 116606994 -35930265 + B2_Mm1t SINE B2 4 179 -14 2 1474 306 120 330 9 chr5 116607041 116607150 -35930109 + B2_Mm2 SINE B2 47 190 -5 2 1474 224 258 42 21 chr5 116607714 116607809 -35929450 + GA-rich Low_complexity Low_complexity 2 98 0 2 1474 432 210 6 116 chr5 116608009 116608193 -35929066 - B4A SINE B4 -141 151 1 2 1474 260 45 0 64 chr5 116608590 116608637 -35928622 + (T)n Simple_repeat Simple_repeat 1 44 0 2 1474 220 211 0 0 chr5 116608956 116608994 -35928265 + MIR3 SINE MIR 118 155 -53 2 1474 246 62 0 0 chr5 116609692 116609724 -35927535 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2 1474 325 286 0 0 chr5 116609765 116609842 -35927417 - MIRm SINE MIR -117 159 83 2 1474 288 0 0 0 chr5 116610139 116610171 -35927088 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2 1474 297 355 78 39 chr5 116610191 116610396 -35926863 + MIRb SINE MIR 29 245 -23 2 1474 333 118 0 0 chr5 116610421 116610472 -35926787 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1474 469 204 11 0 chr5 116610480 116610573 -35926686 - RSINE1 SINE B4 -70 95 2 2 1474 375 157 0 0 chr5 116610880 116610969 -35926290 + GA-rich Low_complexity Low_complexity 1 89 0 2 1474 204 40 0 0 chr5 116611130 116611155 -35926104 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2 1474 3566 23 0 2 chr5 116611161 116611558 -35925701 - MTA_Mm LTR MaLR 0 396 1 2 1474 9519 26 3 1 chr5 116611558 116612654 -35924605 - MTA_Mm-int LTR MaLR 0 1098 1 2 1474 3348 30 0 0 chr5 116612654 116613050 -35924209 - MTA_Mm LTR MaLR 0 396 1 2 1474 393 321 0 0 chr5 116613100 116613374 -35923885 + (CAGA)n Simple_repeat Simple_repeat 1 274 0 2 1474 624 166 14 7 chr5 116614817 116614957 -35922302 + (TCCA)n Simple_repeat Simple_repeat 1 141 0 2 1474 26 64 0 0 chr5 116616265 116616312 -35920947 + AT_rich Low_complexity Low_complexity 1 47 0 2 1474 646 176 7 14 chr5 116616315 116616459 -35920800 + (CATATA)n Simple_repeat Simple_repeat 4 146 0 2 1474 311 0 0 25 chr5 116617468 116617508 -35919751 + (GA)n Simple_repeat Simple_repeat 1 39 0 2 1474 726 12 0 0 chr5 116617678 116617761 -35919498 + (GA)n Simple_repeat Simple_repeat 1 83 0 2 1474 406 197 0 0 chr5 116617771 116617842 -35919417 - B3A SINE B2 -120 78 8 2 1474 929 90 115 6 chr5 116618241 116618397 -35918862 - B2_Mm2 SINE B2 -19 176 4 2 1474 198 0 0 0 chr5 116618536 116618558 -35918701 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 2 1474 340 263 43 9 chr5 116618601 116618716 -35918543 + MER5A1 DNA MER1_type 48 166 0 2 1474 183 114 0 0 chr5 116618995 116619030 -35918229 + (TCTG)n Simple_repeat Simple_repeat 1 35 0 2 1474 2083 115 38 6 chr5 116619194 116619534 -35917725 - MTC LTR MaLR -15 406 56 2 1474 698 238 143 37 chr5 116619537 116619914 -35917345 - MT2A LTR ERVL -193 340 1 2 1474 279 274 17 121 chr5 116619917 116620033 -35917226 + MER63B DNA AcHobo 285 388 -48 2 1474 783 266 130 24 chr5 116621174 116621428 -35915831 - B4A SINE B4 -6 286 6 2 1474 227 356 25 25 chr5 116621650 116621771 -35915488 + MLT2B3 LTR ERVL 6 126 -428 2 1474 462 36 0 0 chr5 116621813 116621869 -35915390 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1474 517 327 19 0 chr5 116621869 116622031 -35915228 - B3 SINE B2 -50 166 2 2 1474 303 326 11 0 chr5 116622168 116622257 -35915002 - MER63D DNA AcHobo -695 366 277 2 1474 7928 55 3 2 chr5 116623013 116624315 -35912944 + L1_Mus1 LINE L1 5264 6567 0 2 1474 380 304 53 37 chr5 116624393 116624581 -35912678 - MIRb SINE MIR -18 250 60 2 1474 264 241 67 22 chr5 116624626 116624715 -35912544 - MIRb SINE MIR -132 136 44 2 1474 279 0 0 0 chr5 116625193 116625224 -35912035 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1474 398 69 17 0 chr5 116625560 116625618 -35911641 + (TCCC)n Simple_repeat Simple_repeat 2 60 0 2 1474 513 280 108 44 chr5 116625751 116626001 -35911258 + MLT1B LTR MaLR 4 269 -121 2 1474 292 308 96 0 chr5 116626446 116626550 -35910709 - MIRm SINE MIR -123 153 40 2 1474 225 83 0 0 chr5 116626721 116626757 -35910502 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1474 261 275 65 21 chr5 116627335 116627428 -35909831 + MTEa LTR MaLR 1 97 -262 2 1474 338 290 22 30 chr5 116627487 116627622 -35909637 + MTEa LTR MaLR 207 340 -39 2 1474 321 267 68 137 chr5 116627691 116627736 -35909523 - RSINE1 SINE B4 -31 134 104 2 1474 1511 37 21 0 chr5 116627736 116627924 -35909335 + B2_Mm1a SINE B2 2 193 0 2 1474 321 267 68 137 chr5 116627924 116627995 -35909264 - RSINE1 SINE B4 -62 103 26 2 1474 669 209 33 44 chr5 116628086 116628230 -35909029 + B3A SINE B2 5 150 -48 2 1474 237 33 0 0 chr5 116628230 116628260 -35908999 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1474 669 209 33 44 chr5 116628260 116628295 -35908964 + B3A SINE B2 151 182 -16 2 1474 365 254 5 8 chr5 116628295 116628689 -35908570 + (CA)n Simple_repeat Simple_repeat 1 392 0 2 1474 457 346 40 26 chr5 116628740 116629013 -35908246 + MLT1H LTR MaLR 19 295 -254 3 1474 708 45 0 0 chr5 116629341 116629429 -35907830 + (GA)n Simple_repeat Simple_repeat 1 88 0 3 1474 257 333 16 47 chr5 116630093 116630222 -35907037 + MER20 DNA MER1_type 88 212 -7 3 1474 233 128 21 0 chr5 116631186 116631233 -35906026 + (GGGA)n Simple_repeat Simple_repeat 3 50 0 3 1474 481 348 0 54 chr5 116631281 116631448 -35905811 - MTEa LTR MaLR -219 160 3 3 1474 243 0 0 0 chr5 116631672 116631699 -35905560 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1474 303 269 0 0 chr5 116633428 116633536 -35903723 + (TG)n Simple_repeat Simple_repeat 2 109 0 3 1474 887 128 5 32 chr5 116633515 116633700 -35903559 + (TATG)n Simple_repeat Simple_repeat 1 180 0 3 1474 246 301 122 27 chr5 116633940 116634128 -35903131 - MIRb SINE MIR -32 236 31 3 1474 2552 87 62 3 chr5 116634439 116634807 -35902452 - ORR1B1 LTR MaLR 0 394 5 3 1474 6522 166 80 25 chr5 116634808 116636238 -35901021 - ORR1B1-int LTR MaLR 0 1509 1 3 1474 2330 109 70 3 chr5 116636238 116636607 -35900652 - ORR1B1 LTR MaLR 0 394 1 3 1474 346 330 0 9 chr5 116636847 116636963 -35900296 + L1MA5 LINE L1 6178 6292 -8 3 1474 278 270 19 21 chr5 116637269 116637386 -35899873 + ORR1E LTR MaLR 1 112 -262 3 1474 234 91 0 0 chr5 116637386 116637419 -35899840 + (GGA)n Simple_repeat Simple_repeat 3 35 0 3 1474 852 276 28 35 chr5 116637421 116637676 -35899583 + ORR1E LTR MaLR 98 350 -9 3 1474 297 312 27 80 chr5 116638628 116638778 -35898481 - MER5B DNA MER1_type -8 170 29 3 1474 320 244 17 0 chr5 116638785 116638900 -35898359 + (TATATG)n Simple_repeat Simple_repeat 4 120 0 3 1474 269 265 0 46 chr5 116638917 116639004 -35898255 + (TA)n Simple_repeat Simple_repeat 2 84 0 3 1474 247 261 9 119 chr5 116639009 116639118 -35898141 + B4A SINE B4 76 172 -120 3 1474 258 329 0 0 chr5 116640241 116640314 -35896945 + G-rich Low_complexity Low_complexity 3 75 0 3 1474 331 284 84 105 chr5 116640394 116640747 -35896512 + ORR1D2 LTR MaLR 14 356 -14 3 1474 280 271 103 23 chr5 116641024 116641111 -35896148 + B4A SINE B4 153 246 -46 3 1474 586 157 5 58 chr5 116641191 116641381 -35895878 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1474 216 111 0 0 chr5 116641395 116641431 -35895828 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1474 339 182 11 40 chr5 116641511 116641688 -35895571 + (CA)n Simple_repeat Simple_repeat 1 172 0 3 1474 367 305 11 0 chr5 116642480 116642575 -35894684 - PB1D10 SINE Alu -17 100 5 3 1474 239 355 18 18 chr5 116642485 116642594 -35894665 - ID_B1 SINE B4 -48 176 68 3 1474 360 0 0 0 chr5 116642609 116642649 -35894610 + (T)n Simple_repeat Simple_repeat 1 40 0 3 1474 401 239 207 7 chr5 116642779 116642914 -35894345 - ORR1E LTR MaLR -183 176 15 3 1474 1099 205 20 20 chr5 116643929 116644173 -35893086 + RMER17B LTR ERVK 524 767 -191 3 1474 288 227 35 92 chr5 116644234 116644375 -35892884 + RMER17B LTR ERVK 761 893 -13 3 1474 813 288 40 51 chr5 116644394 116644668 -35892591 + MTE2a LTR MaLR 107 377 -2 3 1474 229 264 11 65 chr5 116644696 116644729 -35892530 - PB1D10 SINE Alu -29 88 4 3 1474 246 211 18 0 chr5 116644729 116644786 -35892473 - ID_B1 SINE B4 -82 142 85 3 1474 231 125 0 0 chr5 116645405 116645445 -35891814 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 3 1474 931 215 28 5 chr5 116646322 116646537 -35890722 - ID_B1 SINE B4 -1 223 4 3 1474 258 327 9 37 chr5 116646737 116646845 -35890414 + MTEa LTR MaLR 256 360 -19 3 1474 438 20 0 0 chr5 116647355 116647406 -35889853 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1474 203 0 37 0 chr5 116649101 116649128 -35888131 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 3 1474 238 253 126 0 chr5 116649141 116649236 -35888023 - PB1D10 SINE Alu -9 108 2 3 1474 394 194 0 28 chr5 116649420 116649552 -35887707 + (TCTG)n Simple_repeat Simple_repeat 4 132 0 3 1474 1173 54 0 0 chr5 116649552 116649700 -35887559 - B1_Mus1 SINE Alu 0 148 1 3 1474 394 194 0 28 chr5 116649700 116649710 -35887549 + (TCTG)n Simple_repeat Simple_repeat 2 11 0 3 1474 261 130 48 29 chr5 116649762 116649865 -35887394 + (TCTCTG)n Simple_repeat Simple_repeat 2 106 0 3 1474 258 81 0 0 chr5 116649867 116649904 -35887355 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1474 885 174 34 58 chr5 116650069 116650276 -35886983 - B3 SINE B2 -13 203 2 3 1474 452 62 0 15 chr5 116650419 116650484 -35886775 + (GGAA)n Simple_repeat Simple_repeat 4 67 0 3 1474 225 256 0 0 chr5 116650813 116650856 -35886403 + (TTG)n Simple_repeat Simple_repeat 2 44 0 3 1474 279 0 0 0 chr5 116650983 116651014 -35886245 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1474 1055 176 15 10 chr5 116651727 116651928 -35885331 - URR1A DNA MER1_type -23 203 2 3 1474 390 288 32 105 chr5 116651947 116652137 -35885122 + ORR1E LTR MaLR 1 176 -183 3 1474 939 273 18 14 chr5 116652234 116652520 -35884739 + B4A SINE B4 4 290 -2 3 1474 196 321 6 6 chr5 116652538 116652704 -35884555 + (CA)n Simple_repeat Simple_repeat 1 166 0 3 1474 477 235 59 18 chr5 116653579 116653742 -35883517 + Lx8 LINE L1 6956 7119 -577 3 1474 469 225 11 33 chr5 116653764 116653948 -35883311 + (CATA)n Simple_repeat Simple_repeat 1 180 0 3 184 565 229 18 0 chr5 116653959 116654125 -35883134 + (CATA)n Simple_repeat Simple_repeat 4 172 0 3 1475 278 232 0 21 chr5 116654158 116654255 -35883004 + (CATA)n Simple_repeat Simple_repeat 4 98 0 3 1475 216 97 0 0 chr5 116654719 116654750 -35882509 + (CCA)n Simple_repeat Simple_repeat 2 32 0 3 1475 236 53 26 0 chr5 116654915 116654953 -35882306 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 3 1475 396 0 0 0 chr5 116655103 116655147 -35882112 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1475 228 86 0 0 chr5 116656126 116656161 -35881098 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 3 1475 360 0 0 0 chr5 116656815 116656855 -35880404 + (TCTG)n Simple_repeat Simple_repeat 1 40 0 3 1475 372 252 62 132 chr5 116656893 116657135 -35880124 + MTEb LTR MaLR 148 372 -7 3 1475 259 269 21 0 chr5 116657704 116657797 -35879462 + (TA)n Simple_repeat Simple_repeat 1 95 0 3 1475 1248 60 0 12 chr5 116658054 116658223 -35879036 - B2_Mm2 SINE B2 -27 168 2 3 1475 246 62 0 0 chr5 116658237 116658269 -35878990 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 1475 976 88 0 28 chr5 116658269 116658410 -35878849 - B1_Mus1 SINE Alu -10 138 2 3 1475 219 103 0 0 chr5 116658537 116658576 -35878683 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 3 1475 221 83 0 27 chr5 116659411 116659448 -35877811 + (TCC)n Simple_repeat Simple_repeat 3 38 0 3 1475 279 336 54 74 chr5 116659491 116659787 -35877472 - L1MA9 LINE L1 -93 6219 5930 3 1475 432 296 2 0 chr5 116660955 116661368 -35875891 + (TG)n Simple_repeat Simple_repeat 1 414 0 3 1475 469 306 33 40 chr5 116661379 116661529 -35875730 - RSINE1 SINE B4 0 165 17 3 1475 273 309 7 109 chr5 116661574 116661712 -35875547 - B4A SINE B4 -168 124 1 3 1475 878 35 9 0 chr5 116661880 116661996 -35875263 - B1_Mus1 SINE Alu 0 148 32 3 1475 440 191 79 94 chr5 116661882 116662009 -35875250 - B4 SINE B4 -69 223 99 3 1475 218 32 0 31 chr5 116662394 116662426 -35874833 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1475 504 296 72 30 chr5 116663174 116663341 -35873918 + MIR SINE MIR 20 193 -69 3 1475 416 225 89 9 chr5 116663378 116663490 -35873769 - B4A SINE B4 -170 122 2 3 1475 468 0 0 0 chr5 116663917 116663969 -35873290 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 3 1475 1175 41 7 0 chr5 116663970 116664116 -35873143 + B1_Mus2 SINE Alu 1 147 0 3 1475 248 129 8 33 chr5 116664354 116664466 -35872793 + CT-rich Low_complexity Low_complexity 1 109 0 3 1475 447 298 159 34 chr5 116664875 116665139 -35872120 + L1MC5 LINE L1 7629 7925 -36 3 1475 761 204 7 7 chr5 116665370 116665518 -35871741 + RSINE1 SINE B4 3 150 -15 3 1475 392 350 55 10 chr5 116665976 116666175 -35871084 + LTR16A LTR ERVL 118 325 -126 3 1475 299 25 25 0 chr5 116666244 116666284 -35870975 + (TTTTC)n Simple_repeat Simple_repeat 3 43 0 3 1475 240 94 0 0 chr5 116666284 116666316 -35870943 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 3 1475 732 127 26 26 chr5 116666322 116666476 -35870783 + CT-rich Low_complexity Low_complexity 3 156 0 3 1475 738 74 9 0 chr5 116666477 116666585 -35870674 - B1_Mus1 SINE Alu 0 148 40 3 1475 252 219 81 58 chr5 116666520 116666607 -35870652 - RLTR25B LTR ERVK -519 509 421 3 1475 336 304 0 34 chr5 116667391 116667510 -35869749 + PB1D10 SINE Alu 3 117 0 3 1475 242 267 92 13 chr5 116667512 116667588 -35869671 + ID2 SINE ID 2 83 0 3 1475 346 169 56 14 chr5 116667822 116667894 -35869365 - RSINE1 SINE B4 -25 140 66 3 1475 849 147 0 0 chr5 116668225 116668395 -35868864 + (TG)n Simple_repeat Simple_repeat 1 170 0 3 1475 385 322 106 28 chr5 116669951 116670168 -35867091 + B4A SINE B4 41 274 -18 3 1475 483 87 0 0 chr5 116670246 116670315 -35866944 + (GGGA)n Simple_repeat Simple_repeat 3 71 0 3 1475 26 0 0 0 chr5 116670745 116670771 -35866488 + AT_rich Low_complexity Low_complexity 1 26 0 3 1475 338 298 129 31 chr5 116670940 116671165 -35866094 + MLT1H LTR MaLR 43 289 -260 3 1475 430 212 73 30 chr5 116671303 116671468 -35865791 + RLTR15 LTR ERVK 178 349 -10 3 1475 479 309 74 33 chr5 116671601 116671943 -35865316 + MTD LTR MaLR 1 347 -60 3 1475 380 152 10 52 chr5 116671943 116672010 -35865249 + ORR1A4 LTR MaLR 1 63 -266 3 1475 1776 130 6 41 chr5 116672010 116672422 -35864837 + ORR1A4 LTR MaLR 1 394 0 3 1475 409 281 88 59 chr5 116672523 116672693 -35864566 + MTEa LTR MaLR 6 180 -199 3 1475 377 214 42 8 chr5 116672717 116672835 -35864424 + (TG)n Simple_repeat Simple_repeat 1 122 0 3 1475 381 183 16 71 chr5 116672835 116673017 -35864242 + (TATATG)n Simple_repeat Simple_repeat 4 175 0 3 1475 349 263 51 0 chr5 116673022 116673140 -35864119 + (TG)n Simple_repeat Simple_repeat 2 125 0 3 1475 185 287 112 41 chr5 116673409 116673507 -35863752 + L2 LINE L2 2753 2857 -562 3 1475 379 201 15 0 chr5 116673753 116673887 -35863372 + (CA)n Simple_repeat Simple_repeat 2 137 0 3 1475 938 284 125 3 chr5 116673965 116674276 -35862983 - ORR1E LTR MaLR -6 353 5 3 1475 297 284 104 21 chr5 116674298 116674442 -35862817 - MLT1B LTR MaLR -193 197 42 3 1475 372 231 72 32 chr5 116674591 116674605 -35862654 - MTE2a LTR MaLR -56 323 311 4 1475 221 0 0 33 chr5 116674605 116674635 -35862624 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1475 372 280 178 36 chr5 116674635 116674871 -35862388 - MTE2a LTR MaLR -69 310 39 4 1475 234 0 0 0 chr5 116675183 116675209 -35862050 + (C)n Simple_repeat Simple_repeat 1 26 0 4 1475 183 80 0 0 chr5 116675887 116675912 -35861347 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1475 321 239 0 0 chr5 116675915 116675982 -35861277 - B4 SINE B4 -224 68 2 4 1475 507 250 0 57 chr5 116676070 116676227 -35861032 - B3A SINE B2 0 198 51 4 1475 717 257 42 38 chr5 116676948 116677267 -35859992 + B4A SINE B4 5 285 -7 4 1475 236 295 34 11 chr5 116679003 116679092 -35858167 - MTD LTR MaLR 0 379 289 4 1475 233 273 108 29 chr5 116679683 116679785 -35857474 + MIRc SINE MIR 64 173 -95 4 1475 469 216 0 59 chr5 116679991 116680109 -35857150 - PB1D10 SINE Alu -5 112 2 4 1475 726 236 0 131 chr5 116680466 116680695 -35856564 - MTD LTR MaLR -218 201 3 4 1475 244 250 0 0 chr5 116682672 116682728 -35854531 + MTE2b LTR MaLR 287 342 -37 4 1475 423 0 0 0 chr5 116683428 116683475 -35853784 + (GA)n Simple_repeat Simple_repeat 2 48 0 4 1475 243 215 0 0 chr5 116684169 116684234 -35853025 + (CATG)n Simple_repeat Simple_repeat 3 67 0 4 1475 247 212 45 15 chr5 116684270 116684333 -35852926 + B4A SINE B4 74 138 -154 4 1475 1246 61 0 0 chr5 116684333 116684498 -35852761 + B2_Mm2 SINE B2 1 165 -30 4 1475 198 0 0 0 chr5 116684505 116684527 -35852732 + (TAG)n Simple_repeat Simple_repeat 2 23 0 4 1475 753 286 22 93 chr5 116684527 116684666 -35852593 + B4A SINE B4 160 290 -2 4 1475 682 303 133 22 chr5 116684727 116685230 -35852029 + MLT1F2 LTR MaLR 1 559 -1 4 1475 640 223 78 37 chr5 116685694 116685885 -35851374 - B4A SINE B4 -67 225 27 4 1475 728 312 30 58 chr5 116685889 116686320 -35850939 - L1MA8 LINE L1 -266 5890 5478 4 1475 24 0 0 0 chr5 116687278 116687302 -35849957 + AT_rich Low_complexity Low_complexity 1 24 0 4 1475 1044 156 115 0 chr5 116687306 116687498 -35849761 + B3 SINE B2 3 216 0 4 1475 237 65 0 0 chr5 116688592 116688623 -35848636 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1475 381 70 0 0 chr5 116689525 116689582 -35847677 + (A)n Simple_repeat Simple_repeat 1 57 0 4 1475 482 235 65 22 chr5 116689675 116689814 -35847445 + B1F1 SINE Alu 3 147 -2 4 1475 460 189 0 58 chr5 116690329 116690571 -35846688 + CT-rich Low_complexity Low_complexity 1 227 0 4 1475 307 308 83 7 chr5 116690622 116690766 -35846493 - HAL1-3A_ME LINE L1 -420 2438 2284 4 1475 180 143 0 79 chr5 116690766 116690842 -35846417 + CT-rich Low_complexity Low_complexity 2 71 0 4 1475 296 232 109 59 chr5 116691815 116691934 -35845325 - RMER2 LTR ERV1 -4 563 439 4 1475 412 154 38 13 chr5 116691953 116692032 -35845227 - RMER2 LTR ERV1 -486 81 1 4 1475 376 294 25 0 chr5 116692101 116692220 -35845039 + (TGGA)n Simple_repeat Simple_repeat 3 124 0 4 1475 294 95 0 0 chr5 116692293 116692335 -35844924 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 4 1475 215 301 27 0 chr5 116692346 116692419 -35844840 + (TGGA)n Simple_repeat Simple_repeat 2 76 0 4 1475 649 268 75 15 chr5 116693146 116693347 -35843912 - B4A SINE B4 -78 214 2 4 1475 328 310 134 33 chr5 116693387 116693593 -35843666 + MIR SINE MIR 37 260 -8 4 1475 619 232 154 30 chr5 116694072 116694362 -35842897 - MTEb LTR MaLR -8 371 3 4 1475 397 318 73 53 chr5 116694479 116694685 -35842574 + MLT1C LTR MaLR 258 467 0 4 1475 191 340 29 10 chr5 116694898 116695002 -35842257 + L2c LINE L2 3050 3155 -232 4 1475 1410 221 21 78 chr5 116695441 116695651 -35841608 - ORR1D1 LTR MaLR -17 357 165 4 1475 323 61 41 0 chr5 116695651 116695700 -35841559 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 4 1475 1410 221 21 78 chr5 116695700 116695862 -35841397 - ORR1D1 LTR MaLR -210 164 6 4 1475 458 97 43 11 chr5 116696165 116696259 -35841000 - L1Md_F2 LINE L1 0 6582 6486 4 1475 285 151 0 0 chr5 116696626 116696679 -35840580 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1475 12572 124 42 11 chr5 116697828 116700025 -35837234 + Lx2 LINE L1 2457 4720 -1166 4 1475 8547 125 14 47 chr5 116700008 116701464 -35835795 + Lx2 LINE L1 5591 6997 0 4 1475 444 82 0 0 chr5 116701802 116701863 -35835396 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1475 267 343 0 0 chr5 116701989 116702091 -35835168 + Lx8 LINE L1 7229 7330 -143 4 1475 259 270 11 43 chr5 116702255 116702348 -35834911 + B4A SINE B4 9 98 -194 4 1475 222 241 0 18 chr5 116702628 116702683 -35834576 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1475 597 252 22 0 chr5 116702721 116702856 -35834403 + RSINE1 SINE B4 9 146 -19 4 1475 305 305 31 10 chr5 116703020 116703116 -35834143 + PB1D10 SINE Alu 18 115 -2 4 1475 189 0 0 0 chr5 116703124 116703145 -35834114 + (CAAAC)n Simple_repeat Simple_repeat 3 23 0 4 1475 310 243 133 18 chr5 116704163 116704276 -35832983 + MER5A1 DNA MER1_type 18 143 -23 4 1475 646 238 102 27 chr5 116704394 116704580 -35832679 - B3 SINE B2 -13 203 4 4 1475 543 31 0 0 chr5 116704602 116704667 -35832592 + (TTTA)n Simple_repeat Simple_repeat 4 68 0 4 1475 191 349 39 46 chr5 116704728 116704881 -35832378 - L2c LINE L2 -2 3385 3234 4 1475 311 89 0 18 chr5 116705152 116705209 -35832050 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 4 1475 294 206 29 29 chr5 116705289 116705359 -35831900 - MER58A DNA MER1_type -151 73 4 4 1475 627 208 109 27 chr5 116706137 116706167 -35831092 - B3A SINE B2 0 198 172 4 1475 396 0 0 0 chr5 116706167 116706211 -35831048 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1475 627 208 109 27 chr5 116706211 116706363 -35830896 - B3A SINE B2 -27 171 1 4 1475 309 293 0 12 chr5 116706363 116706446 -35830813 - PB1D10 SINE Alu 0 117 36 4 1475 752 281 125 0 chr5 116706637 116706698 -35830561 - B4A SINE B4 -3 289 225 4 1475 375 23 0 0 chr5 116706698 116706742 -35830517 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 4 1475 752 281 125 0 chr5 116706742 116706936 -35830323 - B4A SINE B4 -68 224 3 4 1475 441 312 0 0 chr5 116707063 116707236 -35830023 + (CATG)n Simple_repeat Simple_repeat 3 175 0 4 1475 225 269 0 0 chr5 116707321 116707399 -35829860 + (CA)n Simple_repeat Simple_repeat 2 79 0 4 1475 370 335 44 39 chr5 116707962 116708125 -35829134 + ID_B1 SINE B4 1 160 -64 4 1475 180 0 0 0 chr5 116708125 116708145 -35829114 + (CAGA)n Simple_repeat Simple_repeat 4 23 0 4 1475 370 335 44 39 chr5 116708145 116708161 -35829098 + ID_B1 SINE B4 161 180 -44 4 1475 1067 52 19 6 chr5 116708225 116708381 -35828878 + (GGAGA)n Simple_repeat Simple_repeat 4 161 0 4 1475 368 71 18 0 chr5 116709172 116709228 -35828031 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 4 1475 414 0 0 0 chr5 116709364 116709410 -35827849 + (TC)n Simple_repeat Simple_repeat 1 46 0 4 1475 603 112 0 0 chr5 116709672 116709770 -35827489 + (TG)n Simple_repeat Simple_repeat 2 99 0 4 1475 684 236 8 0 chr5 116709903 116710259 -35827000 + (TG)n Simple_repeat Simple_repeat 1 359 0 4 1475 1408 262 10 46 chr5 116711510 116711902 -35825357 - MTD LTR MaLR -1 418 41 4 1475 225 0 0 0 chr5 116711913 116711938 -35825321 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4 1475 423 0 0 0 chr5 116712730 116712777 -35824482 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1475 466 236 12 31 chr5 116712830 116712984 -35824275 + B3A SINE B2 70 212 -4 4 1475 372 319 90 9 chr5 116713220 116713432 -35823827 - MER113 DNA MER1_type -227 294 66 4 1475 447 128 59 35 chr5 116713641 116713811 -35823448 + GA-rich Low_complexity Low_complexity 4 177 0 4 1475 192 40 0 0 chr5 116713811 116713836 -35823423 + (CAAG)n Simple_repeat Simple_repeat 1 25 0 4 1475 180 0 0 0 chr5 116714763 116714783 -35822476 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1475 873 285 17 8 chr5 116715783 116716024 -35821235 - B4A SINE B4 -2 290 48 4 1475 325 169 0 0 chr5 116716025 116716084 -35821175 + URR1B DNA MER1_type 167 225 0 4 1475 212 292 13 40 chr5 116716168 116716243 -35821016 + MIR SINE MIR 100 172 -90 4 1475 199 227 0 0 chr5 116716284 116716328 -35820931 - MIRb SINE MIR -68 200 157 4 1475 794 245 10 20 chr5 116716829 116717025 -35820234 - B4A SINE B4 -87 205 12 4 1475 402 224 4 1 chr5 116717035 116717121 -35820138 - PB1D10 SINE Alu -31 89 2 4 1475 231 36 0 0 chr5 116717385 116717413 -35819846 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 4 1475 254 276 38 0 chr5 116717425 116717530 -35819729 + (TCCA)n Simple_repeat Simple_repeat 2 110 0 4 1475 184 208 57 0 chr5 116717546 116717599 -35819660 - L4 LINE RTE -640 1389 1334 4 1475 616 250 38 0 chr5 116718678 116718838 -35818421 - B3 SINE B2 -50 166 1 4 1475 242 289 0 11 chr5 116718991 116719082 -35818177 + (TG)n Simple_repeat Simple_repeat 1 90 0 4 1475 224 250 0 10 chr5 116719119 116719216 -35818043 + (TG)n Simple_repeat Simple_repeat 1 96 0 4 1475 896 214 101 39 chr5 116720224 116720481 -35816778 + MTD LTR MaLR 4 276 -143 4 1475 302 299 9 36 chr5 116720571 116720682 -35816577 + ORR1E LTR MaLR 83 190 -169 4 1475 372 43 0 0 chr5 116720733 116720779 -35816480 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1475 537 257 206 14 chr5 116720780 116720989 -35816270 - B4A SINE B4 -41 251 3 4 1475 307 268 72 12 chr5 116721030 116721113 -35816146 + L1M2 LINE L1 3086 3173 -2970 4 1475 222 331 73 48 chr5 116721352 116721517 -35815742 + MIRb SINE MIR 58 226 -42 4 1475 207 0 0 0 chr5 116722244 116722267 -35814992 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1475 819 308 21 49 chr5 116722305 116722592 -35814667 + B4A SINE B4 2 280 -12 4 1475 563 198 17 11 chr5 116722614 116722793 -35814466 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1475 272 287 51 58 chr5 116723314 116723451 -35813808 + ORR1E LTR MaLR 179 314 -45 4 1475 286 206 27 68 chr5 116723617 116723690 -35813569 + ORR1E LTR MaLR 310 379 0 4 1475 951 147 0 20 chr5 116723865 116724011 -35813248 + B1_Mur2 SINE Alu 5 147 -2 4 1475 315 221 0 0 chr5 116724866 116724952 -35812307 + GA-rich Low_complexity Low_complexity 1 86 0 4 1475 2194 150 0 22 chr5 116725525 116725886 -35811373 - ORR1C1 LTR MaLR 0 378 26 4 1475 207 330 65 11 chr5 116727231 116727323 -35809936 - MIR SINE MIR -77 185 89 4 1475 383 255 84 9 chr5 116727345 116727452 -35809807 + MTEa LTR MaLR 47 161 -218 5 1475 397 326 28 90 chr5 116727616 116727828 -35809431 + MT2A LTR ERVL 269 467 -66 5 1475 857 222 83 16 chr5 116727840 116728032 -35809227 + B3 SINE B2 1 205 -11 5 1475 1119 287 83 6 chr5 116729009 116729345 -35807914 + MTE2b LTR MaLR 18 379 0 5 1475 306 0 0 0 chr5 116730106 116730140 -35807119 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1475 405 58 0 0 chr5 116730223 116730275 -35806984 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1475 788 167 160 6 chr5 116730322 116730503 -35806756 + RMER4B LTR ERVK 17 225 -360 5 1475 269 221 8 21 chr5 116730545 116730795 -35806464 + (CTG)n Simple_repeat Simple_repeat 1 246 0 5 1475 513 238 50 72 chr5 116730800 116731056 -35806203 + RMER4B LTR ERVK 286 569 -16 5 1475 338 260 17 157 chr5 116731203 116731294 -35805965 + Lx9 LINE L1 7365 7452 -192 5 1475 1213 62 14 0 chr5 116731294 116731440 -35805819 + B1_Mus1 SINE Alu 1 148 0 5 1475 338 260 17 157 chr5 116731440 116731526 -35805733 + Lx9 LINE L1 7453 7517 -127 5 1475 586 157 112 75 chr5 116731553 116731767 -35805492 + Lx9 LINE L1 7421 7642 -2 5 1475 183 237 153 51 chr5 116732058 116732156 -35805103 + L2b LINE L2 3244 3351 -24 5 1475 404 130 0 26 chr5 116732749 116732866 -35804393 - B2_Mm2 SINE B2 0 195 47 5 1475 999 91 169 0 chr5 116732894 116733048 -35804211 - B2_Mm2 SINE B2 -14 181 2 5 1475 225 65 0 0 chr5 116733368 116733399 -35803860 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1475 877 160 182 0 chr5 116733523 116733710 -35803549 + URR1B DNA MER1_type 5 225 0 5 1475 297 277 104 23 chr5 116734076 116734207 -35803052 + MLT1J LTR MaLR 399 609 -1 5 1475 380 255 28 38 chr5 116734357 116734463 -35802796 - PB1D7 SINE Alu -2 118 14 5 1475 969 53 0 0 chr5 116735188 116735320 -35801939 + (GA)n Simple_repeat Simple_repeat 1 132 0 5 1475 362 226 0 17 chr5 116735357 116735474 -35801785 + GA-rich Low_complexity Low_complexity 2 116 0 5 1475 192 77 0 0 chr5 116736296 116736322 -35800937 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 5 1475 363 248 0 76 chr5 116736405 116736510 -35800749 + RSINE1 SINE B4 2 98 -67 5 1475 182 241 51 112 chr5 116736571 116736669 -35800590 + L3 LINE CR1 3718 3809 -680 5 1475 1346 66 66 0 chr5 116736989 116737171 -35800088 - B2_Mm2 SINE B2 0 195 2 5 1475 535 266 52 131 chr5 116737453 116737682 -35799577 + B3 SINE B2 1 211 -5 5 1475 203 212 84 70 chr5 116739807 116739878 -35797381 - MIR SINE MIR -5 257 186 5 1475 831 244 6 6 chr5 116740692 116740869 -35796390 - B3A SINE B2 -19 179 3 5 1475 261 301 104 28 chr5 116741141 116741247 -35796012 + MIRb SINE MIR 34 147 -121 5 1475 298 368 120 19 chr5 116741435 116741651 -35795608 + MIRb SINE MIR 31 268 0 5 1475 307 232 62 51 chr5 116741698 116741875 -35795384 - RMER17A LTR ERVK -283 468 290 5 1475 281 189 15 29 chr5 116741875 116742011 -35795248 + (CAGA)n Simple_repeat Simple_repeat 4 137 0 5 1475 1490 94 104 25 chr5 116742405 116742646 -35794613 + ORR1A2 LTR MaLR 68 327 0 5 1475 864 167 11 33 chr5 116742805 116742985 -35794274 + L1_Mus2 LINE L1 6391 6566 0 5 1475 198 0 0 0 chr5 116744395 116744417 -35792842 + (TC)n Simple_repeat Simple_repeat 1 22 0 5 1475 31 0 0 0 chr5 116744551 116744582 -35792677 + AT_rich Low_complexity Low_complexity 1 31 0 5 1475 393 267 157 38 chr5 116745232 116745442 -35791817 - ORR1E LTR MaLR -99 260 26 5 1475 1143 50 35 7 chr5 116745584 116745726 -35791533 - B1_Mus2 SINE Alu -1 146 1 5 1475 554 68 59 0 chr5 116745737 116745855 -35791404 + (TCTA)n Simple_repeat Simple_repeat 4 128 0 5 1475 1284 242 73 89 chr5 116745885 116746311 -35790948 - MTD LTR MaLR 0 419 1 5 1475 296 227 26 60 chr5 116746576 116746693 -35790566 + L1MEg LINE L1 580 692 -5392 5 1475 886 232 0 70 chr5 116746707 116746920 -35790339 + B3A SINE B2 1 198 0 5 1475 1241 97 18 23 chr5 116746955 116747174 -35790085 + B2_Mm2 SINE B2 2 216 0 5 1475 399 282 155 16 chr5 116747245 116747548 -35789711 - L1MEc LINE L1 -5323 1077 733 5 1475 476 325 164 58 chr5 116747608 116747850 -35789409 - L1MEc LINE L1 -5782 618 343 5 1475 338 0 24 0 chr5 116747850 116747892 -35789367 + (TC)n Simple_repeat Simple_repeat 1 43 0 5 1475 476 325 164 58 chr5 116747892 116748168 -35789091 - L1MEc LINE L1 -6058 342 45 5 1475 293 299 38 92 chr5 116748534 116748718 -35788541 + MIRc SINE MIR 33 206 -62 5 1475 272 366 93 86 chr5 116748987 116749265 -35787994 - LTR33 LTR ERVL -185 330 51 5 1475 810 266 0 112 chr5 116749392 116749625 -35787634 + B4A SINE B4 73 279 -13 5 1475 778 189 0 11 chr5 116749659 116749841 -35787418 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1475 971 196 82 56 chr5 116749903 116750173 -35787086 - RMER15 LTR ERVL 0 575 299 5 1475 332 231 92 113 chr5 116750171 116750366 -35786893 - RMER15 LTR ERVL -382 193 3 5 1475 236 328 16 0 chr5 116750395 116750456 -35786803 + RMER15 LTR ERVL 499 560 -15 5 1475 2480 264 54 9 chr5 116751416 116752086 -35785173 + Lx8 LINE L1 6268 6967 -506 5 1475 2051 134 8 77 chr5 116752098 116752461 -35784798 - ORR1A1 LTR MaLR -8 338 1 5 1475 415 216 257 46 chr5 116752511 116752686 -35784573 + Lx8 LINE L1 6928 7139 -334 5 1475 331 266 10 31 chr5 116753337 116753434 -35783825 + MLT1A1 LTR MaLR 307 401 -7 5 1475 688 281 53 20 chr5 116753631 116753878 -35783381 - MER112 DNA MER1_type -5 256 2 5 1475 243 304 87 16 chr5 116753981 116754108 -35783151 + LTR85a LTR Gypsy? 1 136 -566 5 1475 539 309 285 57 chr5 116754296 116754717 -35782542 - MLT1K LTR MaLR -4 591 75 5 1475 2052 99 10 27 chr5 116754945 116755284 -35781975 - ORR1A2 LTR MaLR -2 325 1 5 1475 286 169 27 40 chr5 116755284 116755327 -35781932 - ORR1B2 LTR MaLR -278 68 27 5 1475 349 172 24 57 chr5 116755294 116755420 -35781839 - ORR1B2 LTR MaLR -244 123 28 5 1475 521 128 19 0 chr5 116755415 116755523 -35781736 - ORR1B1 LTR MaLR -253 141 1 5 1475 341 186 0 0 chr5 116755587 116755646 -35781613 - MIRc SINE MIR -127 141 83 5 1475 547 231 7 13 chr5 116756460 116756763 -35780496 + (TG)n Simple_repeat Simple_repeat 1 300 0 5 1475 404 184 0 106 chr5 116756785 116756870 -35780389 - B4A SINE B4 -1 291 216 5 1475 757 269 14 45 chr5 116756860 116757082 -35780177 - B3 SINE B2 0 216 2 5 1475 792 287 44 10 chr5 116757082 116757282 -35779977 - B4A SINE B4 -62 230 24 5 1475 447 68 0 0 chr5 116757376 116757435 -35779824 + (TATG)n Simple_repeat Simple_repeat 2 60 0 5 1475 294 220 0 78 chr5 116757482 116757546 -35779713 + B4A SINE B4 170 228 -64 5 1475 633 328 92 9 chr5 116757596 116757824 -35779435 + MER2 DNA MER2_type 90 336 -9 5 1475 387 346 26 0 chr5 116757830 116757983 -35779276 - MLT2D LTR ERVL -43 371 215 5 1475 180 111 0 0 chr5 116758052 116758079 -35779180 + (TATG)n Simple_repeat Simple_repeat 2 28 0 5 1475 308 299 58 25 chr5 116758223 116758343 -35778916 - MLT2D LTR ERVL -407 149 26 5 1475 597 247 103 61 chr5 116758565 116758828 -35778431 - B4A SINE B4 -15 277 4 5 1475 272 361 19 0 chr5 116758906 116759014 -35778245 + MIRc SINE MIR 36 145 -123 5 1475 500 220 15 0 chr5 116759885 116760017 -35777242 + (TATG)n Simple_repeat Simple_repeat 1 134 0 5 1475 286 324 35 18 chr5 116760163 116760276 -35776983 - MLT1A1 LTR MaLR 0 408 294 5 1475 223 122 0 39 chr5 116760521 116760572 -35776687 + GA-rich Low_complexity Low_complexity 1 49 0 5 1475 324 227 70 30 chr5 116760680 116760780 -35776479 - MLT2B4 LTR ERVL -448 108 5 5 1475 689 227 135 0 chr5 116760945 116761108 -35776151 - MTD LTR MaLR -220 199 15 5 1475 461 242 58 0 chr5 116761274 116761394 -35775865 - MTEb LTR MaLR 0 379 253 5 1475 254 271 17 0 chr5 116761542 116761601 -35775658 - ID_B1 SINE B4 -58 166 107 5 1475 311 297 14 0 chr5 116761551 116761625 -35775634 - PB1D10 SINE Alu -42 75 1 5 1475 538 336 13 71 chr5 116761651 116761875 -35775384 + MLT1K LTR MaLR 41 251 -344 5 1475 300 53 0 0 chr5 116762750 116762788 -35774471 + (A)n Simple_repeat Simple_repeat 1 38 0 5 1475 1357 100 21 0 chr5 116763061 116763251 -35774008 - B2_Mm2 SINE B2 -1 194 1 5 1475 414 0 0 0 chr5 116763272 116763318 -35773941 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 5 1475 603 247 51 25 chr5 116763322 116763480 -35773779 - B3A SINE B2 -36 162 1 5 1475 1193 103 23 11 chr5 116763480 116763642 -35773617 + MTC LTR MaLR 258 421 0 5 1475 198 0 0 0 chr5 116764049 116764071 -35773188 + (TG)n Simple_repeat Simple_repeat 1 22 0 5 1475 202 267 26 39 chr5 116764235 116764313 -35772946 + MIRb SINE MIR 1 77 -191 5 1475 208 401 130 13 chr5 116764431 116764585 -35772674 - MER91A DNA Tip100 -22 174 3 5 1475 607 250 90 12 chr5 116764809 116764975 -35772284 + B4A SINE B4 1 179 -113 5 1475 283 228 33 9 chr5 116765157 116765247 -35772012 - MIRm SINE MIR -61 207 113 5 1475 380 305 9 0 chr5 116765322 116765427 -35771832 + PB1D10 SINE Alu 1 106 -11 5 1475 23 0 0 0 chr5 116765813 116765836 -35771423 + AT_rich Low_complexity Low_complexity 1 23 0 5 1475 303 132 37 19 chr5 116765853 116765907 -35771352 - RLTR18 LTR ERVK -200 416 362 5 1475 1673 31 0 0 chr5 116765907 116766098 -35771161 - B2_Mm1a SINE B2 -2 191 1 5 1475 271 301 51 57 chr5 116766207 116766383 -35770876 + RLTR21 LTR ERVK 1081 1255 -317 5 1475 352 340 14 0 chr5 116766388 116766532 -35770727 + (TG)n Simple_repeat Simple_repeat 1 146 0 5 1475 201 209 51 17 chr5 116766536 116766653 -35770606 + (TATATG)n Simple_repeat Simple_repeat 2 122 0 5 1475 340 278 0 0 chr5 116766654 116766744 -35770515 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1475 279 140 0 0 chr5 116768467 116768517 -35768742 + (ATGGTG)n Simple_repeat Simple_repeat 4 53 0 5 1475 397 292 0 28 chr5 116768540 116768649 -35768610 - MIR SINE MIR -110 152 47 6 1475 462 79 0 0 chr5 116768671 116768734 -35768525 + (TA)n Simple_repeat Simple_repeat 2 64 0 6 1475 227 306 14 27 chr5 116770637 116770711 -35766548 - BC1_Mm scRNA scRNA -73 79 7 6 1475 595 136 18 0 chr5 116770828 116770938 -35766321 + CT-rich Low_complexity Low_complexity 1 112 0 6 1475 274 324 83 14 chr5 116770983 116771127 -35766132 - LTR78 LTR ERV1 -861 443 290 6 1475 299 286 11 0 chr5 116771540 116771631 -35765628 + LTR16C LTR ERVL 168 259 -230 6 1475 591 15 0 0 chr5 116772110 116772178 -35765081 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1475 1133 89 38 0 chr5 116772183 116772341 -35764918 - B2_Mm2 SINE B2 -31 164 1 6 1475 22 0 0 0 chr5 116773359 116773381 -35763878 + AT_rich Low_complexity Low_complexity 1 22 0 6 1475 300 348 26 17 chr5 116773651 116773768 -35763491 + MER91B DNA Tip100 1 118 -72 6 1475 1054 335 75 55 chr5 116773796 116774170 -35763089 + MLT1F2 LTR MaLR 3 384 -176 6 1475 3699 94 68 4 chr5 116774170 116774703 -35762556 + RMER2 LTR ERV1 1 567 0 6 1475 1054 335 75 55 chr5 116774703 116774872 -35762387 + MLT1F2 LTR MaLR 385 557 -3 6 1475 319 194 65 0 chr5 116777845 116777907 -35759352 + tRNA-Ala-GCY_ tRNA tRNA 2 67 -8 6 1475 191 329 63 0 chr5 116777920 116777999 -35759260 + MIR SINE MIR 147 230 -32 6 1475 216 0 0 0 chr5 116778336 116778360 -35758899 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 6 1475 315 313 60 17 chr5 116778497 116778614 -35758645 - MIR SINE MIR -54 208 87 6 1475 252 0 0 0 chr5 116778754 116778782 -35758477 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1475 469 292 152 18 chr5 116778809 116778976 -35758283 - B4A SINE B4 0 292 103 6 1475 462 167 0 0 chr5 116778976 116779085 -35758174 + ORR1A2 LTR MaLR 1 109 -237 6 1475 2259 113 9 17 chr5 116779085 116779483 -35757776 + ORR1A2 LTR MaLR 2 394 0 6 1475 254 305 126 0 chr5 116779483 116779577 -35757682 - B4 SINE B4 -185 107 2 6 1475 601 352 38 23 chr5 116779687 116779949 -35757310 - B4A SINE B4 0 292 27 6 1475 901 281 59 15 chr5 116780031 116780349 -35756910 - Lx9 LINE L1 -289 7355 6891 6 1475 25 0 0 0 chr5 116781198 116781223 -35756036 + AT_rich Low_complexity Low_complexity 1 25 0 6 1475 215 283 0 0 chr5 116781317 116781363 -35755896 + (CGTG)n Simple_repeat Simple_repeat 2 47 0 6 1475 473 284 38 75 chr5 116781419 116781632 -35755627 - B4A SINE B4 -87 205 1 6 1475 942 241 86 53 chr5 116782795 116783087 -35754172 + MTEa LTR MaLR 2 304 -75 6 1475 306 296 12 167 chr5 116782871 116783195 -35754064 + MLT2B5 LTR ERVL 125 398 -203 6 1475 392 257 18 54 chr5 116783228 116783339 -35753920 + MTEa LTR MaLR 273 379 0 6 1475 261 0 0 0 chr5 116783472 116783501 -35753758 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6 1475 2149 106 66 0 chr5 116784219 116784522 -35752737 + ORR1A3 LTR MaLR 1 323 -3 6 1475 269 247 13 52 chr5 116784905 116784982 -35752277 + MTEa LTR MaLR 262 335 -44 6 1476 758 305 79 43 chr5 116785417 116785808 -35751451 + MER113 DNA MER1_type 72 476 -45 6 1476 738 226 46 50 chr5 116786337 116786556 -35750703 - RMER12 LTR ERVK 0 1322 1105 6 1476 481 268 34 112 chr5 116786585 116786791 -35750468 - RMER12 LTR ERVK -137 1185 996 6 1476 567 153 0 0 chr5 116786794 116786892 -35750367 + G-rich Low_complexity Low_complexity 3 100 0 6 1476 3846 151 83 37 chr5 116786909 116787478 -35749781 - RMER12 LTR ERVK -531 791 197 6 1476 3477 28 2 0 chr5 116787478 116787873 -35749386 + MTA_Mm LTR MaLR 1 396 0 6 1476 3846 151 83 37 chr5 116787873 116788059 -35749200 - RMER12 LTR ERVK -1126 196 1 6 1476 247 239 0 4 chr5 116788233 116788305 -35748954 - Lx8 LINE L1 -450 7023 6973 6 1476 180 125 0 0 chr5 116788308 116788340 -35748919 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1476 427 218 92 0 chr5 116788374 116788461 -35748798 - B3A SINE B2 -102 96 2 6 1476 448 332 134 40 chr5 116788810 116789108 -35748151 + LTR89 LTR ERVL? 492 817 -62 6 1476 245 306 148 96 chr5 116789620 116789891 -35747368 - ORR1E LTR MaLR -1 358 74 6 1476 246 325 16 70 chr5 116789922 116790051 -35747208 - MLT1A1 LTR MaLR -281 127 6 6 1476 657 214 9 0 chr5 116790387 116790499 -35746760 - B3 SINE B2 -103 113 1 6 1476 1251 102 22 6 chr5 116790554 116790732 -35746527 + B2_Mm2 SINE B2 1 181 -14 6 1476 339 163 0 5 chr5 116790766 116790829 -35746430 + B2_Mm2 SINE B2 49 109 -107 6 1476 471 140 287 9 chr5 116790925 116791040 -35746219 + B1_Mus1 SINE Alu 2 148 0 6 1476 2162 88 52 3 chr5 116791538 116791847 -35745412 + ORR1A3 LTR MaLR 3 326 0 6 1476 279 269 38 9 chr5 116791862 116791967 -35745292 + GA-rich Low_complexity Low_complexity 2 109 0 6 1476 26 0 0 0 chr5 116792839 116792865 -35744394 + GC_rich Low_complexity Low_complexity 1 26 0 6 1476 679 316 29 0 chr5 116793409 116793583 -35743676 - ID_B1 SINE B4 -32 192 14 6 1476 294 211 0 40 chr5 116793593 116793622 -35743637 + polypyrimidine Low_complexity Low_complexity 47 73 0 6 1476 1121 50 0 48 chr5 116793622 116793811 -35743448 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1476 396 0 0 0 chr5 116793811 116793855 -35743404 + (TTCCC)n Simple_repeat Simple_repeat 3 46 0 6 1476 1122 19 0 42 chr5 116793855 116793962 -35743297 + (TTCC)n Simple_repeat Simple_repeat 1 102 0 6 1476 1236 62 6 17 chr5 116793962 116794143 -35743116 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 6 1476 1122 19 0 42 chr5 116794143 116794202 -35743057 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 6 1476 183 80 0 0 chr5 116794208 116794233 -35743026 + (TCC)n Simple_repeat Simple_repeat 3 27 0 6 1476 614 270 71 40 chr5 116794272 116794496 -35742763 - B4A SINE B4 -61 231 1 6 1476 230 328 17 0 chr5 116794686 116794744 -35742515 + MLT1J LTR MaLR 257 315 -197 6 1476 292 233 52 52 chr5 116794956 116795033 -35742226 - B4A SINE B4 -16 276 200 6 1476 242 174 0 80 chr5 116795038 116795088 -35742171 - B4A SINE B4 -223 69 24 6 1476 223 266 16 0 chr5 116795089 116795153 -35742106 + L2 LINE L2 2699 2763 -656 6 1476 232 250 29 0 chr5 116795380 116795448 -35741811 + L2 LINE L2 2694 2763 -656 6 1476 527 257 149 72 chr5 116795544 116795779 -35741480 + B4A SINE B4 18 270 -22 6 1476 398 53 0 17 chr5 116795815 116795873 -35741386 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1476 192 239 65 0 chr5 116795948 116795994 -35741265 - L4 LINE RTE -151 1878 1830 6 1476 309 343 0 0 chr5 116796571 116796670 -35740589 + PB1D10 SINE Alu 19 117 0 6 1476 2769 43 0 47 chr5 116796725 116796782 -35740477 - ORR1A0 LTR MaLR 0 346 306 6 1476 4133 35 0 10 chr5 116796782 116797273 -35739986 - L1Md_T LINE L1 0 6582 6097 6 1476 2769 43 0 47 chr5 116797273 116797578 -35739681 - ORR1A0 LTR MaLR -41 305 1 6 1476 1743 198 122 5 chr5 116797782 116798152 -35739107 - MTC LTR MaLR -8 413 1 6 1476 308 354 92 38 chr5 116798590 116798775 -35738484 + MER2 DNA MER2_type 49 243 -102 6 1476 2404 126 10 39 chr5 116798869 116799258 -35738001 + ORR1C1 LTR MaLR 1 378 0 6 1476 685 267 179 0 chr5 116799572 116799812 -35737447 - B4A SINE B4 -6 286 4 6 1476 182 384 26 43 chr5 116799817 116799934 -35737325 - MIRb SINE MIR -113 155 41 6 1476 468 62 0 0 chr5 116800488 116800552 -35736707 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1476 548 201 87 40 chr5 116800776 116800926 -35736333 - ORR1D2 LTR MaLR -9 361 205 6 1476 660 249 63 107 chr5 116800978 116801087 -35736172 - ORR1D2 LTR MaLR -108 262 177 6 1476 441 0 0 0 chr5 116801087 116801136 -35736123 + (CA)n Simple_repeat Simple_repeat 2 50 0 6 1476 660 249 63 107 chr5 116801136 116801296 -35735963 - ORR1D2 LTR MaLR -194 176 5 6 1476 234 314 94 47 chr5 116801500 116801627 -35735632 + L2b LINE L2 3222 3354 -21 6 1476 330 324 46 0 chr5 116801628 116801736 -35735523 + MIR SINE MIR 34 146 -116 6 1476 594 311 61 128 chr5 116802343 116802489 -35734770 + MLT1A0 LTR MaLR 1 138 -227 6 1476 2263 74 52 61 chr5 116802489 116802819 -35734440 - ORR1A2 LTR MaLR 0 327 1 6 1476 594 311 61 128 chr5 116802819 116802994 -35734265 + MLT1A0 LTR MaLR 139 295 -70 6 1476 536 198 81 0 chr5 116802994 116803105 -35734154 - PB1D9 SINE Alu 0 120 1 6 1476 594 311 61 128 chr5 116803105 116803173 -35734086 + MLT1A0 LTR MaLR 296 365 0 6 1476 238 291 87 82 chr5 116803314 116803509 -35733750 - L2a LINE L2 -20 3406 3211 6 1476 384 22 0 0 chr5 116803610 116803655 -35733604 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1476 246 336 9 63 chr5 116803776 116803800 -35733459 - MTE2b LTR MaLR -274 105 1 6 1476 304 268 23 11 chr5 116803800 116803887 -35733372 - MT2B LTR ERVL -513 88 1 6 1476 846 98 0 0 chr5 116803992 116804114 -35733145 + (GAA)n Simple_repeat Simple_repeat 2 123 0 6 1476 577 244 32 8 chr5 116804162 116804286 -35732973 - ID_B1 SINE B4 -16 208 82 6 1476 238 304 21 21 chr5 116804718 116804812 -35732447 - MLT1A1 LTR MaLR -314 94 1 6 1476 248 366 9 9 chr5 116805567 116805680 -35731579 - MIRb SINE MIR -114 154 42 6 1476 267 312 48 8 chr5 116805692 116805831 -35731428 + MIRm SINE MIR 30 172 -90 6 1476 1218 227 44 151 chr5 116805862 116806252 -35731007 - MTE2a LTR MaLR -22 357 10 6 1476 1297 184 287 54 chr5 116806308 116806768 -35730491 + RMER2 LTR ERV1 1 567 0 6 1476 2787 60 42 12 chr5 116808669 116809057 -35728202 - MTB LTR MaLR -12 388 1 6 1476 23 0 0 0 chr5 116809382 116809405 -35727854 + AT_rich Low_complexity Low_complexity 1 23 0 6 1476 387 0 0 0 chr5 116809421 116809464 -35727795 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1476 818 261 58 43 chr5 116809465 116809741 -35727518 - B4A SINE B4 -12 280 1 6 1476 414 0 0 0 chr5 116810110 116810156 -35727103 + (TTA)n Simple_repeat Simple_repeat 1 46 0 6 1476 360 278 181 32 chr5 116810472 116810781 -35726478 + L1MEc LINE L1 32 386 -6014 6 1476 450 302 54 70 chr5 116811059 116811365 -35725894 + L1MEc LINE L1 4246 4546 -1773 6 1476 601 249 77 77 chr5 116811440 116811623 -35725636 + B3A SINE B2 1 183 -12 6 1476 486 303 43 14 chr5 116811626 116811837 -35725422 + L1MEc LINE L1 4672 4888 -1431 6 1476 330 317 16 24 chr5 116811932 116812055 -35725204 + L1MEc LINE L1 5091 5212 -1107 6 1476 29 47 0 0 chr5 116812218 116812261 -35724998 + AT_rich Low_complexity Low_complexity 1 43 0 6 1476 701 269 63 11 chr5 116812297 116812651 -35724608 + L1MC LINE L1 5055 5430 -2565 7 1476 332 250 109 10 chr5 116813074 116813175 -35724084 + MTEb LTR MaLR 3 113 -266 7 1476 316 261 225 41 chr5 116813320 116813564 -35723695 + LTR16B LTR ERVL 175 463 0 7 1476 495 0 0 0 chr5 116813648 116813703 -35723556 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1476 508 180 0 22 chr5 116813716 116813898 -35723361 + GA-rich Low_complexity Low_complexity 3 180 0 7 1476 738 189 0 29 chr5 116814279 116814415 -35722844 + B1_Mur2 SINE Alu 2 133 -16 7 1476 567 43 0 0 chr5 116814417 116814487 -35722772 + (GGA)n Simple_repeat Simple_repeat 3 72 0 7 1476 330 250 43 0 chr5 116814648 116814740 -35722519 + L1MEc LINE L1 1066 1161 -5239 7 1476 603 312 113 52 chr5 116814766 116815148 -35722111 - MTD LTR MaLR -14 405 1 7 1476 232 239 67 17 chr5 116815148 116815267 -35721992 + L1MEc LINE L1 1174 1298 -5102 7 1476 1211 54 0 0 chr5 116816155 116816302 -35720957 - B1_Mm SINE Alu 0 147 1 7 1476 3565 115 47 4 chr5 116816303 116816389 -35720870 + RLTR31B_Mm LTR ERVK 1 87 -470 7 1476 432 0 0 0 chr5 116816389 116816437 -35720822 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1476 3565 115 47 4 chr5 116816437 116816884 -35720375 + RLTR31B_Mm LTR ERVK 88 556 -1 7 1476 227 309 117 0 chr5 116816940 116817034 -35720225 - L2c LINE L2 -310 3077 2973 7 1476 186 297 0 59 chr5 116817417 116817485 -35719774 + MIRm SINE MIR 1 64 -212 7 1476 411 21 0 0 chr5 116817666 116817714 -35719545 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1476 537 325 41 5 chr5 116818220 116818415 -35718844 - MER2 DNA MER2_type -28 317 116 7 1476 376 272 126 74 chr5 116818407 116818440 -35718819 - MTD LTR MaLR -43 336 308 7 1476 354 45 0 0 chr5 116818440 116818484 -35718775 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1476 1695 167 18 10 chr5 116818484 116818795 -35718464 - MTD LTR MaLR -72 307 10 7 1476 449 296 16 38 chr5 116818806 116818992 -35718267 - B3A SINE B2 -16 182 1 7 1476 444 351 58 0 chr5 116819135 116819326 -35717933 - MER44B DNA MER2_type -1 549 348 7 1476 837 190 23 5 chr5 116819328 116819511 -35717748 + B3 SINE B2 1 194 -1 7 1476 1788 142 106 26 chr5 116820533 116820722 -35716537 - ORR1C1 LTR MaLR 0 378 173 7 1476 222 62 0 0 chr5 116820722 116820754 -35716505 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 7 1476 1788 142 106 26 chr5 116820754 116820903 -35716356 - ORR1C1 LTR MaLR -206 172 15 7 1476 258 56 0 0 chr5 116821057 116821093 -35716166 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 7 1476 364 316 115 55 chr5 116821346 116821744 -35715515 - MLT1J1 LTR MaLR 0 444 55 7 1476 443 275 200 16 chr5 116821810 116822065 -35715194 + L2 LINE L2 2753 3054 -365 7 1476 7266 147 34 19 chr5 116822116 116823347 -35713912 - Lx5 LINE L1 -86 6964 5715 7 1476 186 43 0 0 chr5 116823358 116823381 -35713878 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 7 1476 672 289 90 5 chr5 116823678 116823890 -35713369 + MTEa LTR MaLR 149 378 -1 7 1476 518 183 21 21 chr5 116823903 116824048 -35713211 + GA-rich Low_complexity Low_complexity 2 146 0 7 1476 239 340 64 0 chr5 116824119 116824213 -35713046 + MIR3 SINE MIR 77 176 -32 7 1476 416 240 21 0 chr5 116824688 116824784 -35712475 - PB1D10 SINE Alu -19 98 1 7 1476 342 350 39 6 chr5 116824930 116825108 -35712151 - L1MC1 LINE L1 -127 6206 6023 7 1476 358 325 16 16 chr5 116825135 116825257 -35712002 - B4A SINE B4 0 292 171 7 1476 905 88 10 46 chr5 116825257 116825410 -35711849 - ORR1A2 LTR MaLR 0 407 277 7 1476 2389 92 3 58 chr5 116825413 116825758 -35711501 - ORR1A2 LTR MaLR -1 326 1 7 1476 273 349 98 7 chr5 116825758 116825911 -35711348 - B4A SINE B4 -122 170 4 7 1476 757 270 36 44 chr5 116825917 116826142 -35711117 - L1MC1 LINE L1 -527 5817 5595 7 1476 279 0 0 0 chr5 116826157 116826188 -35711071 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1476 1184 50 0 0 chr5 116826191 116826332 -35710927 - B1_Mm SINE Alu -6 141 1 7 1476 338 295 60 33 chr5 116826347 116826365 -35710894 - L1MC1 LINE L1 -731 5613 5596 7 1476 1074 204 30 0 chr5 116826365 116826566 -35710693 - B3 SINE B2 -5 211 5 7 1476 338 299 80 33 chr5 116826566 116826852 -35710407 - L1MC1 LINE L1 -749 5595 5290 7 1476 348 276 66 66 chr5 116827143 116827279 -35709980 - MLT1A0 LTR MaLR -221 144 9 7 1476 950 103 7 0 chr5 116827412 116827557 -35709702 + (TCCC)n Simple_repeat Simple_repeat 3 148 0 7 1476 1027 153 4 11 chr5 116827826 116828092 -35709167 + (TCCA)n Simple_repeat Simple_repeat 1 264 0 7 1476 926 312 113 52 chr5 116828343 116828803 -35708456 + Kanga1c DNA Tc2 6 493 -236 7 1476 692 268 164 17 chr5 116828823 116829055 -35708204 - B4 SINE B4 -20 272 7 7 1476 472 323 52 80 chr5 116829056 116829305 -35707954 + Kanga1c DNA Tc2 486 727 -2 7 1476 515 264 136 0 chr5 116830468 116830608 -35706651 + B3A SINE B2 1 159 -39 7 1476 3167 141 37 79 chr5 116830873 116831491 -35705768 + RLTR26 LTR ERVK 51 642 0 7 1476 265 222 154 100 chr5 116831505 116831615 -35705644 + ORR1E LTR MaLR 244 359 0 7 1476 415 284 92 75 chr5 116831635 116831875 -35705384 + MLT1B LTR MaLR 114 357 -33 7 1476 279 359 50 31 chr5 116831945 116832106 -35705153 + MIRb SINE MIR 35 201 -67 7 1476 765 293 41 79 chr5 116832187 116832580 -35704679 + L1M2 LINE L1 4515 4892 -1251 7 1476 4733 120 181 69 chr5 116832593 116833522 -35703737 - RLTR13D4 LTR ERVK 0 1033 1 7 1476 231 36 0 0 chr5 116833687 116833715 -35703544 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1476 227 280 16 63 chr5 116834129 116834255 -35703004 + L1_Mur3 LINE L1 5333 5452 -428 7 1476 1401 73 39 0 chr5 116834266 116834445 -35702814 + B2_Mm2 SINE B2 1 186 -9 7 1476 943 90 0 14 chr5 116834445 116834591 -35702668 + (GGAA)n Simple_repeat Simple_repeat 3 146 0 7 1476 1046 90 38 6 chr5 116834595 116834752 -35702507 + B2_Mm2 SINE B2 8 169 -26 7 1476 448 327 33 0 chr5 116834806 116835020 -35702239 + L1M2 LINE L1 5553 5773 -518 7 1476 260 71 71 0 chr5 116835026 116835082 -35702177 + (TA)n Simple_repeat Simple_repeat 2 61 0 7 1476 350 264 52 43 chr5 116835085 116835200 -35702059 + B1F2 SINE Alu 33 148 -1 7 1476 535 296 136 33 chr5 116835247 116835673 -35701586 - Charlie1b DNA MER1_type 0 523 44 7 1476 290 280 121 92 chr5 116835848 116836021 -35701238 - MIRb SINE MIR -45 223 46 7 1476 21 0 0 0 chr5 116836410 116836431 -35700828 + AT_rich Low_complexity Low_complexity 1 21 0 7 1476 206 116 23 0 chr5 116836979 116837022 -35700237 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1476 838 257 48 114 chr5 116837299 116837589 -35699670 + B4 SINE B4 16 286 -6 7 1476 189 196 0 0 chr5 116838335 116838386 -35698873 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1476 401 316 10 0 chr5 116838429 116838527 -35698732 - B4 SINE B4 -1 291 193 7 1476 875 179 21 0 chr5 116838684 116838829 -35698430 - B1_Mur3 SINE Alu 0 149 2 7 1476 261 0 0 0 chr5 116838860 116838889 -35698370 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1476 1133 136 0 54 chr5 116838889 116839075 -35698184 - B2_Mm2 SINE B2 -8 187 12 7 1476 414 0 0 0 chr5 116839104 116839150 -35698109 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1476 346 275 116 27 chr5 116840781 116840927 -35696332 + MIRm SINE MIR 25 183 -93 7 1476 303 253 33 152 chr5 116840964 116841174 -35696085 - L2 LINE L2 -442 2977 2793 7 1476 380 229 0 7 chr5 116841334 116841365 -35695894 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1476 375 23 0 0 chr5 116841365 116841409 -35695850 + (TC)n Simple_repeat Simple_repeat 1 44 0 7 1476 705 236 0 3 chr5 116841409 116841981 -35695278 + (CA)n Simple_repeat Simple_repeat 1 570 0 7 1476 561 256 107 0 chr5 116842248 116842369 -35694890 + RSINE1 SINE B4 8 141 -24 7 1476 217 343 101 14 chr5 116843006 116843145 -35694114 + MIRb SINE MIR 45 195 -73 7 1476 1397 191 112 44 chr5 116843406 116843741 -35693518 + MTD LTR MaLR 49 405 -14 7 1476 723 98 0 0 chr5 116844234 116844336 -35692923 + B2_Mm2 SINE B2 1 102 -93 7 1476 327 279 35 0 chr5 116844501 116844587 -35692672 - B4A SINE B4 -105 187 99 7 1476 396 0 0 0 chr5 116844747 116844791 -35692468 + (TAAAA)n Simple_repeat Simple_repeat 3 46 0 7 1476 507 351 28 32 chr5 116845157 116845375 -35691884 - MIR SINE MIR -20 242 26 7 1476 753 321 40 34 chr5 116845694 116846045 -35691214 - MLT1A0 LTR MaLR 0 365 13 7 1476 588 270 83 40 chr5 116846602 116846897 -35690362 + MLT1F LTR MaLR 138 495 -74 7 1476 1085 55 37 0 chr5 116846936 116847100 -35690159 + (CATA)n Simple_repeat Simple_repeat 3 172 0 7 1476 278 249 0 6 chr5 116847397 116847571 -35689688 + (CA)n Simple_repeat Simple_repeat 1 173 0 7 1476 438 20 0 0 chr5 116847630 116847681 -35689578 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1476 680 270 44 33 chr5 116848274 116848454 -35688805 - B3A SINE B2 -16 182 1 7 1476 591 266 33 75 chr5 116848641 116848946 -35688313 + L1M2 LINE L1 5486 5777 -520 7 1476 366 247 0 0 chr5 116848946 116849124 -35688135 + (CA)n Simple_repeat Simple_repeat 2 179 0 7 1476 588 209 0 0 chr5 116849165 116849450 -35687809 + (CA)n Simple_repeat Simple_repeat 1 285 0 7 1476 192 347 29 39 chr5 116849986 116850088 -35687171 + MIRm SINE MIR 113 213 -63 7 1476 776 308 95 36 chr5 116850348 116850650 -35686609 + MLT1A0 LTR MaLR 9 330 -35 7 1476 342 0 0 0 chr5 116850650 116850688 -35686571 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1476 776 308 95 36 chr5 116850688 116850722 -35686537 + MLT1A0 LTR MaLR 331 364 -1 7 1476 378 0 0 0 chr5 116851237 116851279 -35685980 + (TC)n Simple_repeat Simple_repeat 2 43 0 7 1476 194 0 39 0 chr5 116851279 116851304 -35685955 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1476 1000 271 91 82 chr5 116851330 116851700 -35685559 + MTE2a LTR MaLR 6 370 -49 7 1476 180 0 0 0 chr5 116851700 116851720 -35685539 + (TTG)n Simple_repeat Simple_repeat 1 20 0 7 1476 1000 285 87 77 chr5 116851720 116851758 -35685501 + MTE2a LTR MaLR 332 363 -16 7 1476 296 298 25 50 chr5 116851758 116851878 -35685381 - MIRm SINE MIR -136 140 24 7 1476 842 301 77 72 chr5 116852067 116852511 -35684748 - MER74A LTR ERVL -55 503 58 7 1476 2562 123 33 45 chr5 116852553 116852979 -35684280 + MTC LTR MaLR 1 421 0 7 1476 1261 7 7 7 chr5 116853011 116853157 -35684102 + B1_Mus2 SINE Alu 1 146 -1 7 1476 289 75 38 0 chr5 116853164 116853217 -35684042 + (CAAAAA)n Simple_repeat Simple_repeat 2 56 0 7 1476 791 237 103 26 chr5 116853979 116854174 -35683085 + MTEa LTR MaLR 94 303 -76 7 1476 418 296 19 0 chr5 116854346 116854508 -35682751 + (TCCA)n Simple_repeat Simple_repeat 4 168 0 8 1476 443 148 11 0 chr5 116854546 116854634 -35682625 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 8 1476 618 156 24 18 chr5 116854703 116854873 -35682386 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 8 1476 233 333 29 40 chr5 116855193 116855368 -35681891 - L2b LINE L2 -285 3090 2918 8 1476 243 0 0 0 chr5 116855612 116855639 -35681620 + (TCTG)n Simple_repeat Simple_repeat 3 29 0 8 1476 358 53 17 17 chr5 116856916 116856923 -35680336 + (GA)n Simple_repeat Simple_repeat 1 7 0 8 1476 279 0 0 0 chr5 116856923 116856954 -35680305 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1476 358 53 17 17 chr5 116856954 116857004 -35680255 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 1476 693 83 66 3 chr5 116857001 116857295 -35679964 + (TAGA)n Simple_repeat Simple_repeat 1 312 0 8 1476 402 134 0 0 chr5 116857298 116857365 -35679894 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 8 1476 353 301 113 27 chr5 116857671 116857884 -35679375 + MIR SINE MIR 20 243 -19 8 1476 555 208 0 0 chr5 116857961 116858062 -35679197 + MTE2b LTR MaLR 279 379 0 8 1476 834 184 0 0 chr5 116859612 116859791 -35677468 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1476 230 73 0 24 chr5 116860058 116860100 -35677159 + (CCCCCA)n Simple_repeat Simple_repeat 2 42 0 8 1476 306 107 0 0 chr5 116860868 116860924 -35676335 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1476 739 282 28 83 chr5 116860953 116861005 -35676254 - B4 SINE B4 -18 274 235 8 1476 264 59 0 0 chr5 116861005 116861039 -35676220 + (ATG)n Simple_repeat Simple_repeat 2 35 0 8 1476 739 282 28 83 chr5 116861039 116861276 -35675983 - B4 SINE B4 -58 234 1 8 1476 180 306 207 7 chr5 116861483 116861618 -35675641 + MIRb SINE MIR 81 242 -26 8 1476 234 150 0 0 chr5 116862033 116862073 -35675186 + (CAT)n Simple_repeat Simple_repeat 3 42 0 8 1476 202 143 24 0 chr5 116862322 116862364 -35674895 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 8 1476 946 55 156 0 chr5 116862364 116862492 -35674767 - B1_Mus1 SINE Alu 0 148 1 8 1476 488 256 154 8 chr5 116862976 116863106 -35674153 - B1F SINE Alu 0 149 1 8 1476 405 0 0 0 chr5 116863111 116863156 -35674103 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 1476 417 39 0 0 chr5 116863156 116863206 -35674053 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1476 567 292 32 74 chr5 116863213 116863498 -35673761 - B4A SINE B4 -18 274 2 8 1476 405 0 0 0 chr5 116863617 116863662 -35673597 + (TCCC)n Simple_repeat Simple_repeat 1 45 0 8 1476 684 270 95 81 chr5 116864510 116864771 -35672488 + B4A SINE B4 7 270 -22 8 1476 363 274 44 80 chr5 116864817 116865043 -35672216 - RMER12 LTR ERVK -334 988 771 8 1476 258 105 0 0 chr5 116866298 116866336 -35670923 + (CCCCCT)n Simple_repeat Simple_repeat 6 43 0 8 1476 364 318 85 91 chr5 116866602 116866955 -35670304 - L1ME4a LINE L1 -4 6120 5770 8 1476 307 272 62 0 chr5 116866967 116867048 -35670211 - RSINE1 SINE B4 -35 130 45 8 1476 574 264 85 11 chr5 116867089 116867265 -35669994 - B4A SINE B4 -61 231 43 8 1476 512 336 94 9 chr5 116867882 116868095 -35669164 + Tigger5 DNA MER2_type 2176 2406 0 8 1476 230 194 39 66 chr5 116868738 116868920 -35668339 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 8 1476 252 204 52 15 chr5 116868783 116868917 -35668342 + (TA)n Simple_repeat Simple_repeat 1 139 0 8 1476 237 266 5 58 chr5 116869695 116869798 -35667461 + MIR SINE MIR 108 202 -66 8 1476 21 36 0 0 chr5 116870235 116870263 -35666996 + AT_rich Low_complexity Low_complexity 1 28 0 8 1476 483 317 24 64 chr5 116870301 116870511 -35666748 - MIRb SINE MIR -31 231 37 8 1476 189 0 0 0 chr5 116870759 116870780 -35666479 + (CAGC)n Simple_repeat Simple_repeat 3 23 0 8 1476 357 261 129 14 chr5 116871234 116871374 -35665885 + L1MC3 LINE L1 6492 6647 -1138 8 1476 325 207 11 11 chr5 116871374 116871462 -35665797 + (CATATA)n Simple_repeat Simple_repeat 6 93 0 8 1476 199 278 152 22 chr5 116871463 116871555 -35665704 + MIR SINE MIR 44 147 -115 8 1476 241 270 0 0 chr5 116871785 116871848 -35665411 + LTR50 LTR ERVL 718 780 -15 8 1476 281 82 20 0 chr5 116872045 116872094 -35665165 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1476 341 274 23 46 chr5 116872504 116872634 -35664625 - MIR3 SINE MIR -73 135 9 8 1476 981 291 120 34 chr5 116873356 116873797 -35663462 - MER31A LTR ERV1 -6 479 1 8 1476 304 285 86 75 chr5 116874390 116874576 -35662683 - HAL1-3A_ME LINE L1 -695 2163 1976 8 1476 414 250 63 49 chr5 116874610 116874753 -35662506 - B1F SINE Alu -2 147 3 8 1476 186 279 168 0 chr5 116875147 116875284 -35661975 - MIRm SINE MIR -77 185 29 8 1476 225 0 0 0 chr5 116875568 116875593 -35661666 + (GGCTG)n Simple_repeat Simple_repeat 4 28 0 8 1476 296 293 0 13 chr5 116875875 116875951 -35661308 - ID_B1 SINE B4 -21 203 129 8 1476 513 335 14 52 chr5 116875949 116876057 -35661202 - ID_B1 SINE B4 -21 203 103 8 1476 1246 42 0 0 chr5 116876057 116876200 -35661059 - B1_Mus1 SINE Alu -5 143 1 8 1476 513 335 14 52 chr5 116876200 116876302 -35660957 - ID_B1 SINE B4 -122 102 1 8 1476 360 272 154 0 chr5 116876387 116876523 -35660736 - MIR SINE MIR -69 193 37 8 1476 227 282 23 23 chr5 116876610 116876697 -35660562 - PB1D10 SINE Alu 0 117 31 8 1476 216 209 0 0 chr5 116876730 116876773 -35660486 - MIR SINE MIR -89 119 77 8 1476 363 252 0 0 chr5 116877091 116877234 -35660025 + (TG)n Simple_repeat Simple_repeat 2 144 0 8 1476 606 202 0 0 chr5 116877259 116877422 -35659837 + (TG)n Simple_repeat Simple_repeat 2 164 0 8 1476 341 267 6 0 chr5 116877448 116877624 -35659635 + (TG)n Simple_repeat Simple_repeat 1 177 0 8 1476 244 293 13 0 chr5 116877625 116877700 -35659559 + (TATG)n Simple_repeat Simple_repeat 4 79 0 8 1476 468 0 0 0 chr5 116878010 116878062 -35659197 + (TC)n Simple_repeat Simple_repeat 1 52 0 8 1476 1697 191 99 22 chr5 116878734 116879098 -35658161 - MTD LTR MaLR -14 405 14 8 1476 344 298 198 44 chr5 116879564 116879862 -35657397 + L2a LINE L2 3039 3382 -44 8 1476 633 261 83 86 chr5 116879935 116880003 -35657256 - ORR1E LTR MaLR -11 348 280 8 1476 936 229 35 99 chr5 116880003 116880347 -35656912 - RLTRETN_Mm LTR ERVK 0 322 1 8 1476 633 261 83 86 chr5 116880347 116880626 -35656633 - ORR1E LTR MaLR -80 279 3 8 1476 506 342 78 58 chr5 116881360 116881742 -35655517 - MLT1J LTR MaLR -60 452 63 8 1476 1217 48 7 0 chr5 116881745 116881891 -35655368 + B1_Mus2 SINE Alu 1 147 0 8 1476 462 236 0 0 chr5 116882287 116882452 -35654807 + (TG)n Simple_repeat Simple_repeat 1 165 0 8 1476 1123 273 7 20 chr5 116882516 116882537 -35654722 - B4 SINE B4 -1 291 271 8 1476 414 0 0 0 chr5 116882537 116882583 -35654676 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1476 1123 273 7 20 chr5 116882583 116882856 -35654403 - B4 SINE B4 -22 270 1 8 1476 212 0 0 35 chr5 116883209 116883238 -35654021 + (GGGTG)n Simple_repeat Simple_repeat 3 30 0 8 1476 230 81 0 26 chr5 116883409 116883447 -35653812 + (GGGTG)n Simple_repeat Simple_repeat 4 40 0 8 1476 212 376 25 29 chr5 116883466 116883606 -35653653 - MIRb SINE MIR -45 223 78 8 1476 408 40 0 0 chr5 116883831 116883881 -35653378 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1476 180 0 0 0 chr5 116884085 116884105 -35653154 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1476 300 258 0 15 chr5 116884635 116884702 -35652557 - MER5B DNA MER1_type 0 178 113 8 1476 441 0 0 0 chr5 116884723 116884772 -35652487 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 8 1476 1251 55 0 0 chr5 116884772 116884918 -35652341 - B1_Mus1 SINE Alu -2 146 1 8 1476 288 0 0 0 chr5 116885923 116885955 -35651304 + (TC)n Simple_repeat Simple_repeat 2 33 0 8 1476 198 0 0 0 chr5 116885955 116885976 -35651283 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1476 216 0 0 0 chr5 116885976 116885999 -35651260 + (GA)n Simple_repeat Simple_repeat 1 24 0 8 1476 201 230 0 0 chr5 116886000 116886074 -35651185 + (TG)n Simple_repeat Simple_repeat 1 74 0 8 1476 483 205 0 0 chr5 116886140 116886421 -35650838 + (TG)n Simple_repeat Simple_repeat 1 281 0 8 1476 289 294 56 30 chr5 116886830 116886983 -35650276 - MIRb SINE MIR -67 201 49 8 1476 650 277 85 26 chr5 116887330 116887519 -35649740 + B4 SINE B4 75 274 -18 8 1476 333 0 0 0 chr5 116887530 116887567 -35649692 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1476 2676 122 76 27 chr5 116888529 116888598 -35648661 + RLTR11A LTR ERVK 18 106 -422 8 1476 207 0 0 0 chr5 116888598 116888621 -35648638 + (CCCCCA)n Simple_repeat Simple_repeat 6 28 0 8 1476 2676 122 76 27 chr5 116888621 116889038 -35648221 + RLTR11A LTR ERVK 107 528 0 8 1476 309 264 9 9 chr5 116889667 116889778 -35647481 + A-rich Low_complexity Low_complexity 4 114 0 8 1476 268 316 37 25 chr5 116890061 116890142 -35647117 + ID2 SINE ID 2 83 0 8 1476 232 102 49 33 chr5 116890154 116890215 -35647044 + A-rich Low_complexity Low_complexity 5 66 0 8 1476 507 180 20 20 chr5 116891083 116891236 -35646023 + GA-rich Low_complexity Low_complexity 3 155 0 8 1476 186 71 0 0 chr5 116892498 116892526 -35644733 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 8 1476 234 23 45 23 chr5 116892557 116892601 -35644658 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 8 1476 285 29 0 0 chr5 116894771 116894805 -35642454 + (CTG)n Simple_repeat Simple_repeat 1 34 0 8 1476 201 108 0 0 chr5 116895005 116895042 -35642217 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 8 1476 355 277 86 101 chr5 116895106 116895363 -35641896 + MER113 DNA MER1_type 148 400 -121 8 1476 477 0 0 0 chr5 116897651 116897704 -35639555 + (TA)n Simple_repeat Simple_repeat 1 53 0 8 1476 794 328 89 43 chr5 116897705 116898120 -35639139 + Tigger7 DNA MER2_type 108 541 -1950 8 1476 475 298 112 173 chr5 116898521 116899093 -35638166 + MLT1H LTR MaLR 12 548 -1 8 1476 211 362 28 9 chr5 116899199 116899305 -35637954 - MIRm SINE MIR -122 154 47 8 1476 539 318 24 68 chr5 116899915 116900121 -35637138 + MER113 DNA MER1_type 63 259 -262 8 1476 277 284 93 17 chr5 116900965 116901083 -35636176 - MIRb SINE MIR -54 214 88 8 1476 185 344 0 50 chr5 116901351 116901452 -35635807 + MIRc SINE MIR 31 126 -142 9 1476 355 317 73 61 chr5 116902005 116902250 -35635009 - B4A SINE B4 -32 260 13 9 1476 3180 81 2 0 chr5 116902274 116902670 -35634589 + MTB LTR MaLR 4 400 0 9 1476 270 0 0 0 chr5 116902791 116902821 -35634438 + (TC)n Simple_repeat Simple_repeat 2 31 0 9 1476 459 0 0 0 chr5 116902821 116902871 -35634388 + (TA)n Simple_repeat Simple_repeat 2 52 0 9 1476 897 184 207 0 chr5 116902914 116903093 -35634166 + B3 SINE B2 1 216 0 9 1476 261 227 45 15 chr5 116903233 116903300 -35633959 + (TATATG)n Simple_repeat Simple_repeat 1 69 0 9 1476 215 31 31 0 chr5 116903908 116903940 -35633319 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 9 1476 222 37 0 0 chr5 116904249 116904276 -35632983 + (TC)n Simple_repeat Simple_repeat 1 27 0 9 1476 618 51 0 0 chr5 116904347 116904425 -35632834 + (TTTC)n Simple_repeat Simple_repeat 1 78 0 9 1476 1064 50 0 7 chr5 116906066 116906206 -35631053 + (TTTC)n Simple_repeat Simple_repeat 3 141 0 9 1476 681 163 0 0 chr5 116907435 116907570 -35629689 + CT-rich Low_complexity Low_complexity 2 136 0 9 1476 278 105 0 0 chr5 116907570 116907608 -35629651 + (T)n Simple_repeat Simple_repeat 1 38 0 9 1476 1098 101 0 13 chr5 116907608 116907758 -35629501 - B1_Mus1 SINE Alu 0 148 1 9 1476 4512 36 0 4 chr5 116908102 116908632 -35628627 + L1_Mus1 LINE L1 6039 6566 -1 9 1476 201 132 0 0 chr5 116909752 116909790 -35627469 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 9 1476 477 366 101 18 chr5 116909903 116910189 -35627070 - LTR16C LTR ERVL -79 410 101 9 1476 298 338 90 21 chr5 116910305 116910450 -35626809 + MER102a DNA MER1_type 30 184 -146 9 1476 1188 249 35 3 chr5 116910753 116911035 -35626224 - B4A SINE B4 0 292 2 9 1476 417 254 7 63 chr5 116912050 116912193 -35625066 + Charlie18a DNA MER1_type 57 191 -151 9 1476 272 74 0 36 chr5 116912690 116912746 -35624513 - L1Md_F2 LINE L1 0 6582 6529 9 1476 575 291 93 0 chr5 116912782 116912884 -35624375 - B4A SINE B4 -52 240 136 9 1476 186 43 0 0 chr5 116912884 116912907 -35624352 + (TCC)n Simple_repeat Simple_repeat 3 25 0 9 1476 575 292 117 3 chr5 116912907 116913004 -35624255 - B4A SINE B4 -157 135 8 9 1476 318 250 26 4 chr5 116913685 116913789 -35623470 + MIRc SINE MIR 73 183 -93 9 1476 204 323 122 8 chr5 116913870 116914001 -35623258 + L2c LINE L2 3083 3228 -159 9 1476 190 337 12 35 chr5 116915193 116915279 -35621980 - MIR SINE MIR -80 182 99 9 1476 239 255 0 0 chr5 116915358 116915409 -35621850 + (TATG)n Simple_repeat Simple_repeat 4 54 0 9 1476 200 231 0 0 chr5 116916007 116916046 -35621213 - MIRc SINE MIR -120 148 110 9 1477 206 395 66 0 chr5 116916682 116916758 -35620501 - MIRb SINE MIR -151 117 37 9 1477 233 309 20 49 chr5 116916844 116916946 -35620313 + MIRc SINE MIR 70 168 -100 9 1477 242 115 0 19 chr5 116917646 116917699 -35619560 + (TTAGGG)n Simple_repeat Simple_repeat 2 53 0 9 1477 369 0 0 0 chr5 116917884 116917925 -35619334 + (GA)n Simple_repeat Simple_repeat 1 41 0 9 1477 238 309 58 116 chr5 116918366 116918538 -35618721 - Charlie8 DNA MER1_type -2266 162 1 9 1477 493 277 53 8 chr5 116918712 116918843 -35618416 + B1F SINE Alu 5 141 -8 9 1477 297 135 0 0 chr5 116920004 116920056 -35617203 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1477 183 182 26 13 chr5 116920547 116920625 -35616634 + (CA)n Simple_repeat Simple_repeat 2 80 0 9 1477 261 343 89 28 chr5 116921506 116921701 -35615558 - MIRb SINE MIR -10 258 46 9 1477 196 232 123 18 chr5 116922010 116922067 -35615192 + MIRc SINE MIR 58 120 -148 9 1477 270 302 22 35 chr5 116922095 116922254 -35615005 + MIRc SINE MIR 43 203 -65 9 1477 188 231 119 71 chr5 116922314 116922398 -35614861 - MIR3 SINE MIR -5 203 116 9 1477 402 282 0 0 chr5 116922884 116923054 -35614205 + CT-rich Low_complexity Low_complexity 1 170 0 9 1477 466 246 6 6 chr5 116923084 116923252 -35614007 + CT-rich Low_complexity Low_complexity 1 168 0 9 1477 383 274 7 7 chr5 116923820 116923924 -35613335 - PB1D10 SINE Alu -16 101 1 9 1477 209 234 16 0 chr5 116924607 116924671 -35612588 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1477 234 329 17 116 chr5 116924895 116925067 -35612192 + MLT1M LTR MaLR 518 672 0 9 1477 307 307 33 75 chr5 116925380 116925543 -35611716 - MIRm SINE MIR -93 175 32 9 1477 26 30 0 0 chr5 116926324 116926357 -35610902 + AT_rich Low_complexity Low_complexity 1 33 0 9 1477 209 342 61 9 chr5 116926488 116926603 -35610656 + MIRb SINE MIR 122 242 -26 9 1477 683 186 25 0 chr5 116926714 116926832 -35610427 - B1F SINE Alu -26 123 3 9 1477 230 352 68 54 chr5 116926832 116926864 -35610395 - MT2B2 LTR ERVL -423 161 128 9 1477 238 229 108 59 chr5 116926878 116926980 -35610279 - MIR SINE MIR -109 153 47 9 1477 180 0 0 0 chr5 116928009 116928029 -35609230 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 9 1477 451 174 192 10 chr5 116928061 116928160 -35609099 - B1_Mur2 SINE Alu 0 149 33 9 1477 800 243 43 47 chr5 116928361 116928594 -35608665 - B4 SINE B4 -59 233 2 9 1477 224 324 155 12 chr5 116928607 116928734 -35608525 - MIRc SINE MIR -128 148 4 9 1477 180 0 0 0 chr5 116928896 116928916 -35608343 + (CG)n Simple_repeat Simple_repeat 2 21 0 9 1477 450 0 0 0 chr5 116928916 116928965 -35608294 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1477 327 97 0 16 chr5 116929291 116929354 -35607905 + B2_Mm2 SINE B2 131 192 -3 9 1477 629 310 45 80 chr5 116930046 116930310 -35606949 + B4 SINE B4 42 292 0 9 1477 432 258 0 0 chr5 116930310 116930494 -35606765 + (CA)n Simple_repeat Simple_repeat 1 184 0 9 1477 753 268 0 35 chr5 116930673 116930843 -35606416 - RSINE1 SINE B4 0 165 2 9 1477 336 24 0 0 chr5 116931209 116931250 -35606009 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1477 310 285 161 5 chr5 116931443 116931632 -35605627 - HAL1-3A_ME LINE L1 -420 2438 2282 9 1477 336 255 65 78 chr5 116931623 116931776 -35605483 - HAL1-3A_ME LINE L1 -424 2434 2284 9 1477 328 315 174 13 chr5 116932903 116933161 -35604098 + MLT1F LTR MaLR 162 422 -126 9 1477 195 100 0 0 chr5 116933220 116933250 -35604009 + (CCCCG)n Simple_repeat Simple_repeat 3 32 0 9 1477 503 333 72 0 chr5 116933764 116933917 -35603342 - B4A SINE B4 -120 172 9 9 1477 219 171 0 24 chr5 116934116 116934158 -35603101 + (CACCC)n Simple_repeat Simple_repeat 5 45 0 9 1477 565 272 114 13 chr5 116934328 116934555 -35602704 + L2b LINE L2 2911 3160 -215 9 1477 315 0 0 0 chr5 116935108 116935143 -35602116 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 1477 205 138 0 0 chr5 116935377 116935406 -35601853 + (CAG)n Simple_repeat Simple_repeat 1 29 0 9 1477 236 213 0 21 chr5 116935724 116935772 -35601487 - MIRb SINE MIR -1 267 221 9 1477 184 286 0 0 chr5 116935738 116935780 -35601479 - L2b LINE L2 -18 3357 3316 9 1477 192 125 0 0 chr5 116935904 116935936 -35601323 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 9 1477 765 174 23 29 chr5 116937340 116937512 -35599747 + URR1B DNA MER1_type 55 225 0 9 1477 204 67 0 0 chr5 116937587 116937617 -35599642 + (CAGAGA)n Simple_repeat Simple_repeat 2 31 0 9 1477 262 274 82 0 chr5 116937954 116938027 -35599232 + MIRm SINE MIR 27 105 -171 9 1477 1199 163 29 10 chr5 116938165 116938370 -35598889 - URR1B DNA MER1_type 0 225 17 9 1477 502 332 57 88 chr5 116938547 116938966 -35598293 - L2a LINE L2 -1 3425 3020 9 1477 4563 32 4 4 chr5 116938978 116939583 -35597676 + L1Md_F2 LINE L1 6003 6582 0 9 1477 219 299 141 107 chr5 116939595 116940100 -35597159 - L2a LINE L2 -447 2972 2451 9 1477 384 317 8 0 chr5 116940316 116940439 -35596820 - Lx8 LINE L1 -198 7275 7152 9 1477 255 300 27 9 chr5 116940441 116940552 -35596707 - L2a LINE L2 -971 2448 2336 9 1477 233 231 0 0 chr5 116940766 116940818 -35596441 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 9 1477 537 271 5 2 chr5 116941502 116941926 -35595333 + (CA)n Simple_repeat Simple_repeat 1 425 0 9 1477 180 77 0 0 chr5 116942672 116942698 -35594561 + (TTG)n Simple_repeat Simple_repeat 1 26 0 9 1477 3903 176 73 16 chr5 116942747 116943137 -35594122 + RMER17B LTR ERVK 2 435 -523 9 1477 513 0 0 0 chr5 116943137 116943194 -35594065 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 1477 3903 220 70 57 chr5 116943194 116943763 -35593496 + RMER17B LTR ERVK 359 894 -12 9 1477 234 227 0 0 chr5 116943776 116943851 -35593408 + (ATG)n Simple_repeat Simple_repeat 3 77 0 9 1477 210 349 35 11 chr5 116944497 116944584 -35592675 + MIRb SINE MIR 34 122 -146 9 1477 222 290 0 152 chr5 116945454 116945572 -35591687 - MIR SINE MIR -76 132 33 9 1477 295 281 170 0 chr5 116947591 116947744 -35589515 + MIR SINE MIR 33 211 -51 9 1477 388 354 33 17 chr5 116947961 116948142 -35589117 - LTR16C LTR ERVL -154 335 152 9 1477 232 321 65 51 chr5 116948727 116948865 -35588394 - ORR1E LTR MaLR -211 148 9 9 1477 381 302 164 88 chr5 116949754 116950277 -35586982 + L2 LINE L2 2509 3071 -348 9 1477 234 220 20 35 chr5 116951064 116951122 -35586137 - MIRm SINE MIR -148 128 53 9 1477 195 327 78 50 chr5 116951866 116952085 -35585174 + L2a LINE L2 2728 2952 -467 9 1477 196 294 135 19 chr5 116952246 116952350 -35584909 + L2a LINE L2 3258 3373 -2 9 1477 279 141 0 0 chr5 116952540 116952604 -35584655 + (A)n Simple_repeat Simple_repeat 1 64 0 9 1477 300 301 36 73 chr5 116953220 116953385 -35583874 - MIR SINE MIR -10 252 94 9 1477 471 279 92 62 chr5 116953404 116953664 -35583595 - MIRc SINE MIR 0 268 1 9 1477 1223 48 0 0 chr5 116953753 116953899 -35583360 - B1_Mus1 SINE Alu 0 148 3 9 1477 413 314 59 0 chr5 116954632 116954785 -35582474 + MIRb SINE MIR 63 224 -44 9 1477 443 243 6 0 chr5 116954884 116955057 -35582202 + (CAT)n Simple_repeat Simple_repeat 3 176 0 9 1477 273 213 0 0 chr5 116955144 116955191 -35582068 + L2a LINE L2 3373 3419 -7 9 1477 239 159 68 16 chr5 116955729 116955929 -35581330 + (TA)n Simple_repeat Simple_repeat 1 210 0 9 1477 192 255 102 93 chr5 116955939 116956047 -35581212 + L2c LINE L2 3278 3386 -1 1 1477 369 0 0 0 chr5 116956227 116956268 -35580991 + (TA)n Simple_repeat Simple_repeat 2 42 0 1 1477 226 254 0 63 chr5 116957685 116957748 -35579511 - MIRb SINE MIR -89 179 121 1 1477 239 152 20 80 chr5 116958430 116958480 -35578779 + RMER15 LTR ERVL 4 50 -525 1 1477 2032 207 114 9 chr5 116958480 116958928 -35578331 + RMER15 LTR ERVL 15 509 -66 1 1477 324 250 18 0 chr5 116960850 116961023 -35576236 + (CGTG)n Simple_repeat Simple_repeat 1 176 0 1 1477 588 248 15 22 chr5 116961036 116961172 -35576087 - RSINE1 SINE B4 0 165 31 1 1477 704 300 54 78 chr5 116962742 116963168 -35574091 + MTE2a LTR MaLR 1 417 -2 1 1477 594 0 0 0 chr5 116963323 116963389 -35573870 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1477 213 353 19 29 chr5 116963426 116963531 -35573728 - L2 LINE L2 -534 2885 2782 1 1477 269 330 10 0 chr5 116963531 116963628 -35573631 + (TG)n Simple_repeat Simple_repeat 2 99 0 1 1477 403 289 137 12 chr5 116963841 116964002 -35573257 - MER5A DNA MER1_type 0 189 9 1 1477 1008 164 0 3 chr5 116964572 116964931 -35572328 + (TCCA)n Simple_repeat Simple_repeat 1 357 0 1 1477 210 328 0 0 chr5 116964938 116964996 -35572263 + (CCCA)n Simple_repeat Simple_repeat 4 61 0 1 1477 246 294 43 117 chr5 116965299 116965461 -35571798 + MIRb SINE MIR 82 231 -31 1 1477 272 337 76 29 chr5 116965687 116965858 -35571401 - MIRc SINE MIR -17 251 73 1 1477 573 348 138 3 chr5 116966581 116966907 -35570352 + MLT1I LTR MaLR 42 411 0 1 1477 656 101 23 8 chr5 116967070 116967200 -35570059 + (TG)n Simple_repeat Simple_repeat 1 132 0 1 1477 907 269 50 46 chr5 116967202 116967483 -35569776 - B4 SINE B4 -9 283 2 1 1477 201 330 107 42 chr5 116967592 116967807 -35569452 - MIR SINE MIR -17 245 17 1 1477 534 208 0 0 chr5 116968561 116968715 -35568544 + (CA)n Simple_repeat Simple_repeat 1 154 0 1 1477 261 0 0 0 chr5 116968844 116968873 -35568386 + (GTGTG)n Simple_repeat Simple_repeat 2 30 0 1 1477 1100 267 26 8 chr5 116968931 116969195 -35568064 - B4A SINE B4 -14 278 10 1 1477 233 314 101 39 chr5 116969962 116970091 -35567168 - MIRc SINE MIR -117 151 15 1 1477 321 118 0 0 chr5 116970767 116970818 -35566441 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 1 1477 194 356 63 79 chr5 116971420 116971652 -35565607 + MIR SINE MIR 13 252 -16 1 1477 940 236 31 40 chr5 116971709 116971934 -35565325 + ID_B1 SINE B4 2 224 0 1 1477 31 0 0 0 chr5 116971935 116971966 -35565293 + AT_rich Low_complexity Low_complexity 1 31 0 1 1477 540 30 0 0 chr5 116972902 116972968 -35564291 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1477 231 179 0 0 chr5 116973591 116973630 -35563629 - MIRc SINE MIR -132 136 98 1 1477 449 346 178 9 chr5 116974231 116974563 -35562696 + MLT1K LTR MaLR 98 485 -110 1 1477 225 0 0 0 chr5 116974637 116974662 -35562597 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1477 541 293 204 4 chr5 116974692 116974918 -35562341 - B4A SINE B4 -17 275 5 1 1477 601 327 22 19 chr5 116975546 116975814 -35561445 - MER113 DNA MER1_type -70 451 183 1 1477 823 89 7 15 chr5 116975978 116976114 -35561145 + (TCTA)n Simple_repeat Simple_repeat 3 137 0 1 1477 263 107 36 0 chr5 116976134 116976190 -35561069 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 1 1477 186 43 0 0 chr5 116976248 116976271 -35560988 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1477 180 328 178 7 chr5 116977226 116977361 -35559898 - L3 LINE CR1 -119 4370 4213 1 1477 408 310 94 31 chr5 116977597 116977757 -35559502 - MER20 DNA MER1_type -49 170 1 1 1477 321 205 92 46 chr5 116977769 116977856 -35559403 + MER3 DNA MER1_type 19 109 -100 1 1477 291 157 0 0 chr5 116977990 116978041 -35559218 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 1 1477 255 320 287 8 chr5 116978830 116978959 -35558300 + MLT1B LTR MaLR 1 165 -225 1 1477 699 340 99 53 chr5 116979113 116979566 -35557693 + MLT2B3 LTR ERVL 18 491 -63 1 1477 209 267 31 72 chr5 116979808 116979905 -35557354 + MIR SINE MIR 40 132 -76 1 1477 293 282 149 22 chr5 116980623 116980757 -35556502 - MIR SINE MIR -75 187 37 1 1477 355 220 23 6 chr5 116980855 116981029 -35556230 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 1477 529 230 13 4 chr5 116981041 116981273 -35555986 + (TG)n Simple_repeat Simple_repeat 1 234 0 1 1477 636 344 45 23 chr5 116981303 116981568 -35555691 - B4A SINE B4 -20 272 2 1 1477 393 127 0 0 chr5 116982235 116982314 -35554945 + (TC)n Simple_repeat Simple_repeat 2 80 0 1 1477 192 40 0 0 chr5 116982314 116982339 -35554920 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1477 402 315 5 53 chr5 116982472 116982723 -35554536 + C-rich Low_complexity Low_complexity 1 238 0 1 1477 220 320 10 29 chr5 116982920 116983023 -35554236 + CT-rich Low_complexity Low_complexity 1 101 0 1 1477 261 0 0 0 chr5 116983691 116983720 -35553539 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1 1477 3711 44 5 9 chr5 116984494 116984932 -35552327 - RLTR10C LTR ERVK 0 436 1 1 1477 965 229 112 4 chr5 116984973 116985072 -35552187 - Lx9 LINE L1 -780 6864 6763 1 1477 2986 73 30 2 chr5 116985072 116985468 -35551791 - MTB_Mm LTR MaLR 0 407 1 1 1477 965 229 112 4 chr5 116985468 116985635 -35551624 - Lx9 LINE L1 -882 6762 6569 1 1477 1071 202 46 23 chr5 116985615 116985878 -35551381 + Lx9 LINE L1 7327 7595 -49 1 1477 27 0 0 0 chr5 116985885 116985912 -35551347 + AT_rich Low_complexity Low_complexity 1 27 0 1 1477 262 367 52 28 chr5 116987670 116987883 -35549376 - MIRc SINE MIR -25 243 26 1 1477 507 33 0 0 chr5 116988483 116988544 -35548715 + (TCC)n Simple_repeat Simple_repeat 3 63 0 1 1477 1060 198 51 47 chr5 116988775 116989051 -35548208 + Lx3C LINE L1 6698 6974 -2 1 1477 557 309 104 22 chr5 116990182 116990450 -35546809 + B4A SINE B4 1 290 -2 1 1477 710 227 40 84 chr5 116991206 116991408 -35545851 + B3A SINE B2 1 193 -5 1 1477 441 0 0 0 chr5 116992211 116992260 -35544999 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1 1477 990 252 76 36 chr5 116992261 116992590 -35544669 - ORR1E LTR MaLR -15 344 3 1 1477 346 303 193 29 chr5 116992698 116992936 -35544323 + LTR16A LTR ERVL 158 434 -17 1 1477 1126 56 21 0 chr5 116993359 116993501 -35543758 + B1_Mus2 SINE Alu 2 146 -1 1 1477 223 80 0 57 chr5 116993502 116993555 -35543704 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 1 1477 264 183 56 0 chr5 116993641 116993712 -35543547 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 1477 542 229 0 35 chr5 116994022 116994135 -35543124 + ID_B1 SINE B4 108 216 -8 1 1477 494 293 74 125 chr5 116994342 116994650 -35542609 + MLT1F2 LTR MaLR 206 585 -42 1 1477 221 154 0 0 chr5 116994668 116994707 -35542552 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 1 1477 369 84 96 19 chr5 116994707 116994864 -35542395 + (TG)n Simple_repeat Simple_repeat 2 170 0 1 1477 258 109 109 0 chr5 116994875 116994985 -35542274 + (TG)n Simple_repeat Simple_repeat 2 123 0 1 1477 723 219 19 12 chr5 116994987 116995149 -35542110 - RSINE1 SINE B4 0 165 3 1 1477 246 62 0 0 chr5 116995531 116995563 -35541696 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1477 640 233 0 0 chr5 116995581 116995714 -35541545 + B1_Mur1 SINE Alu 6 138 -11 1 1477 195 100 0 0 chr5 116995788 116995818 -35541441 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1 1477 526 281 26 68 chr5 116996869 116996895 -35540364 - B2_Mm2 SINE B2 -12 183 158 1 1477 306 0 0 0 chr5 116996895 116996929 -35540330 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1477 719 221 40 14 chr5 116996929 116997093 -35540166 - B3A SINE B2 -38 157 1 1 1477 1015 206 272 3 chr5 116997517 116997829 -35539430 + MTD LTR MaLR 1 396 -23 1 1477 286 293 113 26 chr5 116997992 116998143 -35539116 + MER5A DNA MER1_type 1 164 -25 1 1477 1058 252 51 7 chr5 116998230 116998506 -35538753 + B4A SINE B4 5 292 0 1 1477 344 209 12 0 chr5 116998523 116998609 -35538650 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1477 308 266 63 0 chr5 116998655 116998734 -35538525 + HAL1-3A_ME LINE L1 1975 2058 -800 1 1477 597 256 40 71 chr5 116999109 116999307 -35537952 - B3A SINE B2 -6 192 1 1 1477 814 279 66 84 chr5 116999628 116999902 -35537357 + B4A SINE B4 24 292 0 1 1477 351 377 33 0 chr5 117000000 117000183 -35537076 - MLT1L LTR MaLR -119 491 303 1 1477 652 158 16 43 chr5 117000383 117000641 -35536618 + CT-rich Low_complexity Low_complexity 1 250 0 2 1477 199 351 106 40 chr5 117000706 117000905 -35536354 + L2 LINE L2 2668 2879 -540 3 1477 338 311 106 20 chr5 117000916 117001067 -35536192 + LTR16B2 LTR ERVL 1 164 -298 4 1477 661 252 145 89 chr5 117001218 117001466 -35535793 - B4A SINE B4 0 292 31 5 1477 742 281 27 16 chr5 117001602 117001776 -35535483 + B3A SINE B2 6 184 -14 6 1477 651 71 0 0 chr5 117001776 117001874 -35535385 + (TC)n Simple_repeat Simple_repeat 1 98 0 7 1477 369 0 0 0 chr5 117001874 117001914 -35535345 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1477 742 281 27 16 chr5 117001914 117001926 -35535333 + B3A SINE B2 185 194 -4 6 1477 313 367 24 24 chr5 117001937 117002060 -35535199 + PB1 SINE Alu 2 124 -3 9 1477 263 272 10 0 chr5 117002744 117002847 -35534412 + (CA)n Simple_repeat Simple_repeat 1 104 0 1 1477 246 256 50 91 chr5 117003962 117004061 -35533198 - L2b LINE L2 0 3426 3302 1 1477 262 331 93 40 chr5 117004612 117004763 -35532496 + MLT1L LTR MaLR 51 209 -401 1 1477 313 285 105 8 chr5 117004916 117005040 -35532219 + MLT1L LTR MaLR 469 604 -6 1 1477 1277 227 25 14 chr5 117006011 117006297 -35530962 + B4 SINE B4 1 289 -3 1 1477 579 147 0 0 chr5 117006378 117006480 -35530779 + (GA)n Simple_repeat Simple_repeat 2 103 0 1 1477 190 298 95 76 chr5 117006588 117006821 -35530438 - MIRc SINE MIR -30 238 2 1 1477 184 364 26 0 chr5 117007492 117007569 -35529690 + MIR SINE MIR 75 153 -55 1 1477 356 279 110 41 chr5 117007678 117007824 -35529435 + ORR1E LTR MaLR 40 195 -164 1 1477 606 271 53 107 chr5 117008077 117008574 -35528685 + RMER15 LTR ERVL 14 575 0 1 1477 2161 110 6 87 chr5 117008653 117009011 -35528248 + ORR1A4 LTR MaLR 1 329 0 1 1477 336 48 0 0 chr5 117009052 117009094 -35528165 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 1477 561 234 91 77 chr5 117009873 117010081 -35527178 + ORR1E LTR MaLR 1 211 -148 2 1477 301 335 62 34 chr5 117010442 117010621 -35526638 - MIRb SINE MIR -27 241 58 2 1477 281 26 0 26 chr5 117010774 117010813 -35526446 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 2 1477 263 354 10 0 chr5 117011182 117011278 -35525981 - MIR SINE MIR -118 144 48 2 1477 394 185 189 61 chr5 117011631 117011763 -35525496 + B1F2 SINE Alu 1 149 0 2 1477 388 259 71 37 chr5 117011871 117012049 -35525210 - MLT1C LTR MaLR -15 534 352 2 1477 260 303 88 29 chr5 117012309 117012445 -35524814 + LTR45C LTR ERV1 382 525 -14 2 1477 489 315 74 12 chr5 117012449 117012693 -35524566 - MLT1C LTR MaLR -156 311 53 2 1477 242 188 70 33 chr5 117012711 117012787 -35524472 - L2b LINE L2 -253 3173 3087 2 1477 432 0 0 0 chr5 117013214 117013262 -35523997 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1477 552 204 12 3 chr5 117014371 117014507 -35522752 + B3 SINE B2 7 147 -46 3 1477 384 22 0 0 chr5 117014829 117014874 -35522385 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1477 243 254 0 56 chr5 117015095 117015166 -35522093 + B4A SINE B4 7 73 -219 3 1477 399 175 0 0 chr5 117015193 117015313 -35521946 + GA-rich Low_complexity Low_complexity 1 120 0 3 1477 222 128 0 0 chr5 117015531 117015570 -35521689 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 3 1477 674 241 7 0 chr5 117016170 117016315 -35520944 + B3A SINE B2 1 146 -52 3 1477 474 18 0 0 chr5 117016330 117016385 -35520874 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1477 423 0 0 0 chr5 117016385 117016431 -35520828 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1477 413 327 25 32 chr5 117016798 117016956 -35520303 + MER20 DNA MER1_type 3 159 -60 3 1477 189 0 0 0 chr5 117017376 117017397 -35519862 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1477 845 183 39 22 chr5 117017399 117017578 -35519681 - B3A SINE B2 -12 186 5 4 1477 272 290 60 0 chr5 117017886 117017986 -35519273 - L1M5 LINE L1 -613 5560 5455 4 1477 2291 143 31 21 chr5 117018003 117018389 -35518870 - ORR1B1 LTR MaLR 0 394 5 4 1477 528 186 0 0 chr5 117018458 117018571 -35518688 + (TA)n Simple_repeat Simple_repeat 2 114 0 4 1477 219 256 87 60 chr5 117018599 117018741 -35518518 - L2b LINE L2 -4 3422 3274 4 1477 255 221 0 29 chr5 117019309 117019379 -35517880 + C-rich Low_complexity Low_complexity 3 70 0 4 1477 423 0 0 0 chr5 117019381 117019428 -35517831 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1477 309 89 0 0 chr5 117019565 117019610 -35517649 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1477 21 0 0 0 chr5 117020194 117020215 -35517044 + AT_rich Low_complexity Low_complexity 1 21 0 4 1477 245 274 107 12 chr5 117020282 117020402 -35516857 - MIRb SINE MIR -71 197 47 4 1477 243 0 0 0 chr5 117020425 117020452 -35516807 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1477 231 393 32 24 chr5 117020540 117020665 -35516594 + MIR3 SINE MIR 6 131 -77 5 1477 271 315 176 0 chr5 117020776 117020884 -35516375 + B1F1 SINE Alu 5 131 -18 5 1477 22 35 0 0 chr5 117021934 117021963 -35515296 + GC_rich Low_complexity Low_complexity 1 29 0 5 1477 559 316 10 10 chr5 117022172 117022370 -35514889 - MIRc SINE MIR -1 267 70 5 1477 195 42 0 0 chr5 117022402 117022426 -35514833 + (CAGC)n Simple_repeat Simple_repeat 2 25 0 5 1477 185 316 50 50 chr5 117022508 117022588 -35514671 - MIR SINE MIR 0 262 183 5 1477 221 0 0 33 chr5 117023139 117023169 -35514090 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 5 1477 182 246 68 55 chr5 117024059 117024132 -35513127 - L2 LINE L2 -3103 316 243 5 1477 213 400 50 0 chr5 117024382 117024522 -35512737 + MIRc SINE MIR 85 231 -37 5 1477 495 295 6 45 chr5 117025066 117025222 -35512037 + MER44B DNA MER2_type 159 308 -242 6 1477 3417 86 42 2 chr5 117025267 117025724 -35511535 + MT2C_Mm LTR ERVL 1 475 0 6 1477 826 176 8 0 chr5 117026720 117026851 -35510408 - B1_Mur2 SINE Alu -17 132 1 6 1477 219 283 38 0 chr5 117026903 117026956 -35510303 + MIR SINE MIR 173 227 -35 6 1477 182 273 117 80 chr5 117027855 117028018 -35509241 + MIRb SINE MIR 68 236 -32 6 1477 309 243 0 54 chr5 117028092 117028166 -35509093 - MER117 DNA MER1_type -10 187 118 6 1477 319 289 188 26 chr5 117028167 117028284 -35508975 - MER117 DNA MER1_type -29 168 33 6 1477 531 321 182 20 chr5 117028744 117029046 -35508213 + MamGypLTR1c LTR Gypsy 1 351 -452 6 1477 216 288 68 0 chr5 117029131 117029190 -35508069 + MIRc SINE MIR 84 146 -122 6 1477 995 167 124 20 chr5 117029358 117029560 -35507699 - URR1A DNA MER1_type -2 224 2 6 1477 883 238 79 0 chr5 117029562 117029751 -35507508 + B3 SINE B2 12 215 -1 6 1477 207 0 0 0 chr5 117030219 117030242 -35507017 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1477 500 231 9 0 chr5 117030351 117030459 -35506800 - PB1D10 SINE Alu -8 109 1 7 1477 201 278 0 0 chr5 117030604 117030694 -35506565 + (TGGA)n Simple_repeat Simple_repeat 3 92 0 7 1477 284 70 23 0 chr5 117030745 117030788 -35506471 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 7 1477 294 269 155 32 chr5 117031260 117031443 -35505816 + MIRc SINE MIR 50 257 -11 7 1477 180 235 0 0 chr5 117031859 117031893 -35505366 + L2c LINE L2 3354 3387 0 7 1477 218 222 0 0 chr5 117032346 117032391 -35504868 + MIR SINE MIR 118 162 -100 7 1477 468 0 0 0 chr5 117033197 117033249 -35504010 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1477 571 186 0 0 chr5 117033391 117033488 -35503771 - RSINE1 SINE B4 -66 99 3 7 1477 609 83 0 0 chr5 117033871 117033955 -35503304 + (GA)n Simple_repeat Simple_repeat 1 84 0 7 1477 235 350 32 0 chr5 117034373 117034496 -35502763 + L2a LINE L2 2994 3120 -306 8 1477 469 280 70 39 chr5 117035451 117035607 -35501652 - MIRb SINE MIR -23 245 85 8 1477 578 316 0 89 chr5 117035751 117035942 -35501317 + B4 SINE B4 119 292 0 8 1477 498 122 0 0 chr5 117035991 117036089 -35501170 + (GA)n Simple_repeat Simple_repeat 1 98 0 8 1477 276 53 0 0 chr5 117036094 117036132 -35501127 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1477 397 310 6 31 chr5 117037036 117037196 -35500063 + MamRep434 DNA TcMar 9 164 -262 8 1477 891 263 118 35 chr5 117037892 117038208 -35499051 + MTE2b LTR MaLR 1 337 -42 8 1477 233 29 29 0 chr5 117038208 117038242 -35499017 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1477 891 263 118 35 chr5 117038242 117038272 -35498987 + MTE2b LTR MaLR 338 376 -3 8 1477 198 0 0 0 chr5 117038567 117038589 -35498670 + (AGGTG)n Simple_repeat Simple_repeat 2 23 0 8 1477 282 56 0 0 chr5 117039651 117039687 -35497572 + (CAGA)n Simple_repeat Simple_repeat 1 36 0 8 1477 180 0 0 0 chr5 117043042 117043062 -35494197 + (CCCCCA)n Simple_repeat Simple_repeat 1 20 0 9 1477 736 243 47 38 chr5 117043746 117043981 -35493278 - MTEa LTR MaLR 0 379 143 9 1477 1121 256 102 62 chr5 117044270 117044755 -35492504 - RMER13A LTR ERVK -123 504 1 9 1477 487 224 83 33 chr5 117044755 117044857 -35492402 - MTEa LTR MaLR -259 120 13 9 1477 485 301 41 52 chr5 117045081 117045253 -35492006 + MIRb SINE MIR 26 195 -73 9 1477 210 71 0 0 chr5 117045816 117045844 -35491415 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1477 677 308 20 61 chr5 117045850 117045924 -35491335 - B4 SINE B4 -6 286 214 9 1477 225 0 0 0 chr5 117045924 117045949 -35491310 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9 1477 677 308 20 61 chr5 117045949 117046171 -35491088 - B4 SINE B4 -79 213 2 9 1477 22 0 0 0 chr5 117046369 117046391 -35490868 + AT_rich Low_complexity Low_complexity 1 22 0 9 1477 582 270 7 13 chr5 117046560 117046714 -35490545 + MTD LTR MaLR 26 178 -241 9 1477 786 250 99 57 chr5 117046742 117047005 -35490254 + MTD LTR MaLR 146 419 0 9 1477 254 260 26 13 chr5 117047106 117047184 -35490075 - MTEb LTR MaLR -23 356 278 9 1478 235 231 0 0 chr5 117047375 117047427 -35489832 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1478 285 146 0 0 chr5 117047431 117047479 -35489780 + (GGA)n Simple_repeat Simple_repeat 3 50 0 1 1478 1056 108 0 0 chr5 117047481 117047638 -35489621 + (GAA)n Simple_repeat Simple_repeat 3 159 0 1 1478 272 242 16 16 chr5 117048029 117048092 -35489167 + MER46C DNA MER2_type 265 327 -11 1 1478 836 144 0 52 chr5 117048403 117048557 -35488702 + B1_Mur3 SINE Alu 2 147 -2 1 1478 349 314 124 45 chr5 117049050 117049227 -35488032 + MIR SINE MIR 25 215 -47 1 1478 277 263 78 25 chr5 117049882 117050019 -35487240 - MIRb SINE MIR -93 175 39 1 1478 3415 181 25 36 chr5 117050143 117050860 -35486399 - Lx5 LINE L1 -43 7007 6299 1 1478 211 189 0 0 chr5 117050925 117050962 -35486297 + CT-rich Low_complexity Low_complexity 4 40 0 1 1478 294 313 181 0 chr5 117051516 117051599 -35485660 + B4A SINE B4 124 221 -71 1 1478 758 131 29 21 chr5 117051684 117051969 -35485290 + (CAGA)n Simple_repeat Simple_repeat 1 287 0 1 1478 396 0 0 0 chr5 117051969 117052013 -35485246 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1478 2341 163 24 33 chr5 117052034 117052459 -35484800 + MTC LTR MaLR 1 421 0 1 1478 447 286 112 36 chr5 117052467 117052744 -35484515 - MTE2a LTR MaLR -43 336 39 1 1478 1052 134 0 11 chr5 117053077 117053258 -35484001 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1 1478 206 253 72 48 chr5 117054640 117054723 -35482536 - MIRm SINE MIR -155 121 37 1 1478 186 43 0 0 chr5 117055182 117055205 -35482054 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1478 41852 5 0 0 chr5 117055243 117061593 -35475666 - L1Md_A LINE L1 0 6582 232 1 1478 455 167 11 0 chr5 117061867 117061957 -35475302 + GA-rich Low_complexity Low_complexity 1 91 0 1 1478 265 331 74 47 chr5 117062891 117063040 -35474219 - MLT1A1 LTR MaLR 0 408 256 1 1478 556 303 42 11 chr5 117063515 117063705 -35473554 + B4A SINE B4 8 203 -89 1 1478 192 158 0 0 chr5 117063767 117063805 -35473454 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1478 364 254 63 56 chr5 117063985 117064127 -35473132 + L1MA4 LINE L1 6089 6231 -66 1 1478 216 97 0 0 chr5 117064240 117064271 -35472988 + (C)n Simple_repeat Simple_repeat 1 31 0 1 1478 305 299 68 62 chr5 117064314 117064361 -35472898 - Charlie18a DNA MER1_type -132 210 158 1 1478 519 17 0 0 chr5 117064361 117064421 -35472838 + (GA)n Simple_repeat Simple_repeat 1 60 0 1 1478 305 299 68 62 chr5 117064421 117064519 -35472740 - Charlie18a DNA MER1_type -185 157 64 1 1478 274 273 81 81 chr5 117064750 117064852 -35472407 - L1MB4 LINE L1 -25 6158 6062 1 1478 243 0 0 0 chr5 117064852 117064879 -35472380 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1478 1200 43 0 0 chr5 117064881 117065022 -35472237 - B1_Mus2 SINE Alu -6 141 1 1 1478 277 273 81 81 chr5 117065022 117065187 -35472072 - L1MB4 LINE L1 -122 6061 5887 1 1478 1449 58 21 21 chr5 117065470 117065663 -35471596 - B2_Mm2 SINE B2 -1 194 2 1 1478 210 377 30 20 chr5 117065723 117065926 -35471333 - L2c LINE L2 -232 3155 2951 1 1478 335 297 59 88 chr5 117066160 117066330 -35470929 - MTEb LTR MaLR -3 376 212 1 1478 757 294 66 99 chr5 117067018 117067259 -35470000 + ORR1E LTR MaLR 39 270 -89 1 1478 1150 195 28 14 chr5 117067259 117067472 -35469787 + B3 SINE B2 1 216 0 1 1478 459 0 0 0 chr5 117067478 117067529 -35469730 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1478 757 287 65 101 chr5 117067529 117067611 -35469648 + ORR1E LTR MaLR 277 358 -1 1 1478 234 150 0 0 chr5 117067728 117067768 -35469491 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 1 1478 525 280 11 35 chr5 117069070 117069244 -35468015 + MER53 DNA hAT 17 186 -7 1 1478 243 146 0 24 chr5 117069401 117069443 -35467816 - B3 SINE B2 -99 117 77 1 1478 663 154 29 6 chr5 117069578 117069748 -35467511 + (TG)n Simple_repeat Simple_repeat 1 174 0 1 1478 372 182 38 8 chr5 117069768 117069901 -35467358 + (TG)n Simple_repeat Simple_repeat 2 138 0 1 1478 784 247 112 60 chr5 117069914 117069977 -35467282 - B4A SINE B4 -8 284 226 1 1478 800 192 7 0 chr5 117069977 117070123 -35467136 - B1_Mur1 SINE Alu 0 149 3 1 1478 784 247 112 60 chr5 117070123 117070326 -35466933 - B4A SINE B4 -67 225 4 1 1478 777 256 81 19 chr5 117070620 117070831 -35466428 - RMER21A LTR ERV1 -258 689 466 1 1478 278 314 0 28 chr5 117070863 117070971 -35466288 - RMER21A LTR ERV1 -661 181 77 1 1478 271 294 82 101 chr5 117071009 117071228 -35466031 - ORR1E LTR MaLR -37 322 108 1 1478 236 239 53 118 chr5 117071325 117071401 -35465858 - ORR1E LTR MaLR -290 89 19 1 1478 235 274 11 45 chr5 117071641 117071729 -35465530 + Charlie18a DNA MER1_type 100 184 -158 1 1478 1183 218 71 32 chr5 117072133 117072413 -35464846 + B4A SINE B4 2 292 0 1 1478 384 206 15 7 chr5 117072413 117072550 -35464709 + (CA)n Simple_repeat Simple_repeat 1 138 0 1 1478 201 357 14 0 chr5 117073132 117073202 -35464057 - MIRb SINE MIR -23 245 175 1 1478 600 224 0 0 chr5 117073296 117073544 -35463715 + (TG)n Simple_repeat Simple_repeat 1 248 0 1 1478 486 191 6 22 chr5 117073586 117073768 -35463491 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1478 413 239 11 43 chr5 117073992 117074084 -35463175 - B4A SINE B4 -62 230 142 1 1478 181 100 24 48 chr5 117074478 117074520 -35462739 + CT-rich Low_complexity Low_complexity 1 41 0 1 1478 226 291 11 34 chr5 117074526 117074574 -35462685 + polypyrimidine Low_complexity Low_complexity 43 90 0 1 1478 303 313 0 0 chr5 117074574 117074657 -35462602 - ID4 SINE ID 0 83 1 1 1478 226 291 11 34 chr5 117074657 117074697 -35462562 + polypyrimidine Low_complexity Low_complexity 5 42 0 1 1478 1054 286 3 38 chr5 117074811 117075098 -35462161 - B4A SINE B4 -8 284 8 1 1478 621 338 89 20 chr5 117075258 117075551 -35461708 + MLT1F2 LTR MaLR 199 511 -49 1 1478 344 289 46 60 chr5 117075710 117075861 -35461398 - B1F SINE Alu 0 149 1 1 1478 1311 92 0 6 chr5 117076306 117076481 -35460778 - B2_Mm2 SINE B2 -19 176 3 1 1478 261 247 0 141 chr5 117077086 117077171 -35460088 + MER3 DNA MER1_type 137 209 0 1 1478 423 0 0 0 chr5 117077442 117077489 -35459770 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1478 228 224 85 17 chr5 117077599 117077658 -35459601 + RMER17A LTR ERVK 480 542 -209 1 1478 216 224 42 69 chr5 117077964 117078036 -35459223 - MER5A DNA MER1_type -57 132 63 1 1478 309 280 83 17 chr5 117078252 117078372 -35458887 - L2a LINE L2 -36 3390 3263 1 1478 567 238 13 0 chr5 117078399 117078542 -35458717 + B4 SINE B4 94 245 -47 1 1478 240 86 0 0 chr5 117078554 117078589 -35458670 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 1 1478 754 275 173 29 chr5 117078695 117079002 -35458257 + MLT2B5 LTR ERVL 4 354 -363 1 1478 739 287 93 75 chr5 117079134 117079466 -35457793 + MLT1B LTR MaLR 28 365 -25 1 1478 614 208 0 0 chr5 117079471 117079577 -35457682 + MTC LTR MaLR 3 108 -313 1 1478 267 143 18 0 chr5 117079583 117079639 -35457620 - RMER19A LTR ERVK -6 731 675 1 1478 2029 83 3 18 chr5 117079642 117079924 -35457335 - MTB_Mm LTR MaLR -129 278 1 1 1478 197 352 28 0 chr5 117080071 117080142 -35457117 - L2a LINE L2 -2 3424 3352 1 1478 224 311 111 26 chr5 117080355 117080522 -35456737 + MIRb SINE MIR 42 220 -48 1 1478 378 0 0 0 chr5 117080646 117080688 -35456571 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1478 363 207 171 0 chr5 117080694 117080776 -35456483 - PB1D10 SINE Alu -8 109 14 1 1478 351 0 0 0 chr5 117080898 117080937 -35456322 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1478 776 211 0 44 chr5 117080939 117081098 -35456161 - RSINE1 SINE B4 -11 154 3 1 1478 243 0 0 0 chr5 117082468 117082495 -35454764 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1478 367 326 58 37 chr5 117083661 117083849 -35453410 + MER20 DNA MER1_type 2 193 -26 1 1478 966 292 97 18 chr5 117083951 117084282 -35452977 + MTE2b LTR MaLR 21 377 -2 1 1478 536 0 16 0 chr5 117084290 117084354 -35452905 + (GA)n Simple_repeat Simple_repeat 1 65 0 1 1478 182 154 51 0 chr5 117084427 117084466 -35452793 - MIRc SINE MIR -116 152 112 1 1478 188 264 92 71 chr5 117085106 117085204 -35452055 + MIRb SINE MIR 38 137 -131 1 1478 216 306 16 16 chr5 117085115 117085178 -35452081 - MIR SINE MIR -192 70 8 1 1478 432 0 0 0 chr5 117085327 117085375 -35451884 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1 1478 804 218 109 0 chr5 117085389 117085554 -35451705 + B3 SINE B2 3 187 -29 1 1478 198 0 0 0 chr5 117085554 117085576 -35451683 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1478 804 218 109 0 chr5 117085576 117085603 -35451656 + B3 SINE B2 188 215 -1 1 1478 531 301 25 13 chr5 117085627 117085785 -35451474 + RSINE1 SINE B4 4 163 -2 1 1478 405 292 35 9 chr5 117085885 117085999 -35451260 + MER58A DNA MER1_type 1 117 -107 1 1478 219 349 45 13 chr5 117086035 117086158 -35451101 - MIR SINE MIR -68 194 73 1 1478 574 322 108 22 chr5 117087486 117087765 -35449494 - L1MB2 LINE L1 -415 5897 5594 1 1478 285 206 0 0 chr5 117087946 117088043 -35449216 + GA-rich Low_complexity Low_complexity 2 98 0 1 1478 597 232 0 35 chr5 117088045 117088181 -35449078 - B3A SINE B2 -55 143 13 1 1478 280 305 9 0 chr5 117088209 117088314 -35448945 - L1MB2 LINE L1 -598 5585 5480 1 1478 369 0 0 0 chr5 117088315 117088356 -35448903 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1478 732 148 0 0 chr5 117088356 117088511 -35448748 + (GA)n Simple_repeat Simple_repeat 2 156 0 1 1478 285 238 0 0 chr5 117088513 117088593 -35448666 + GA-rich Low_complexity Low_complexity 1 80 0 1 1478 479 237 0 3 chr5 117088604 117088906 -35448353 + GA-rich Low_complexity Low_complexity 1 300 0 1 1478 1096 81 0 12 chr5 117088927 117089090 -35448169 + (GA)n Simple_repeat Simple_repeat 2 162 0 1 1478 258 260 13 13 chr5 117089098 117089176 -35448083 - L1MB2 LINE L1 -718 5462 5385 1 1478 242 342 49 26 chr5 117089719 117089853 -35447406 + MIRb SINE MIR 3 136 -140 1 1478 821 298 57 28 chr5 117089908 117090191 -35447068 - B4A SINE B4 0 292 2 1 1478 503 321 143 24 chr5 117090335 117090622 -35446637 + MLT1F LTR MaLR 222 542 -6 1 1478 216 0 0 0 chr5 117091062 117091086 -35446173 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1478 224 359 57 19 chr5 117091092 117091197 -35446062 - MIR SINE MIR -65 143 35 1 1478 377 234 133 14 chr5 117091307 117091450 -35445809 - Lx8 LINE L1 -337 7136 6977 2 1478 310 285 103 26 chr5 117091443 117091495 -35445764 + Lx8 LINE L1 7279 7343 -130 2 1478 429 20 0 0 chr5 117091495 117091545 -35445714 + (TAA)n Simple_repeat Simple_repeat 1 50 0 2 1478 310 285 103 26 chr5 117091545 117091647 -35445612 + Lx8 LINE L1 7344 7444 -29 2 1478 2412 139 7 67 chr5 117091781 117092198 -35445061 + ORR1B1 LTR MaLR 1 392 -2 2 1478 826 320 5 0 chr5 117092357 117092563 -35444696 + B3 SINE B2 5 211 -5 2 1478 195 42 0 0 chr5 117092573 117092597 -35444662 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2 1478 989 193 155 59 chr5 117093538 117093818 -35443441 + ORR1D1 LTR MaLR 1 310 -64 2 1478 438 20 0 0 chr5 117093818 117093869 -35443390 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 2 1478 989 193 155 59 chr5 117093869 117093929 -35443330 + ORR1D1 LTR MaLR 311 373 -1 2 1478 254 274 18 72 chr5 117094157 117094267 -35442992 - MLT1N2 LTR MaLR -2 670 462 2 1478 328 318 6 149 chr5 117094744 117094925 -35442334 + B4A SINE B4 2 156 -136 2 1478 516 32 0 0 chr5 117095053 117095115 -35442144 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1478 539 194 11 25 chr5 117096452 117096936 -35440323 + (CA)n Simple_repeat Simple_repeat 1 476 0 2 1478 1947 225 35 12 chr5 117096953 117097354 -35439905 + MTC LTR MaLR 1 410 -11 2 1478 284 324 0 19 chr5 117097368 117097475 -35439784 + (CA)n Simple_repeat Simple_repeat 2 106 0 2 1478 184 283 16 48 chr5 117097793 117097856 -35439403 - L4 LINE RTE -134 1895 1835 2 1478 707 169 14 0 chr5 117098451 117098593 -35438666 + (CATA)n Simple_repeat Simple_repeat 3 146 0 2 1478 344 329 153 51 chr5 117098601 117098992 -35438267 - LTR16A LTR ERVL -6 445 15 2 1478 344 259 91 93 chr5 117099634 117099778 -35437481 + B4A SINE B4 3 146 -146 2 1478 234 379 81 64 chr5 117100421 117100593 -35436666 - MIRc SINE MIR -37 231 57 2 1478 234 218 0 18 chr5 117101418 117101474 -35435785 + MER103 DNA DNA 37 91 -75 2 1478 1915 150 3 7 chr5 117101744 117102046 -35435213 - Lx4A LINE L1 -2 7056 6756 2 1478 283 279 0 0 chr5 117102196 117102264 -35434995 - MLT1K LTR MaLR -358 237 170 2 1478 193 272 114 97 chr5 117102432 117102546 -35434713 - L2c LINE L2 -3 3384 3269 2 1478 480 35 0 0 chr5 117103202 117103260 -35433999 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 2 1478 3357 53 2 0 chr5 117103260 117103659 -35433600 + MTB LTR MaLR 1 400 0 2 1478 299 100 42 14 chr5 117103659 117103730 -35433529 + (TCTA)n Simple_repeat Simple_repeat 3 75 0 2 1478 948 51 16 38 chr5 117103741 117103924 -35433335 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2 1478 186 71 0 0 chr5 117103928 117103956 -35433303 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 2 1478 600 298 43 37 chr5 117103956 117104120 -35433139 - B4 SINE B4 -80 212 48 2 1478 941 280 56 91 chr5 117104284 117104657 -35432602 + MTEa LTR MaLR 1 360 -19 2 1478 1195 299 31 36 chr5 117105085 117105735 -35431524 + Lx8 LINE L1 5469 6149 -1324 2 1478 2460 306 59 21 chr5 117106341 117106411 -35430848 + Lx8 LINE L1 6224 6293 -1180 2 1478 2185 110 31 3 chr5 117106411 117106729 -35430530 - ORR1A2 LTR MaLR 0 327 1 2 1478 2460 306 59 21 chr5 117106729 117107410 -35429849 + Lx8 LINE L1 6294 7006 -467 2 1478 549 0 0 0 chr5 117107410 117107471 -35429788 + (GA)n Simple_repeat Simple_repeat 2 62 0 2 1478 2460 306 59 21 chr5 117107471 117107567 -35429692 + Lx8 LINE L1 7007 7104 -369 2 1478 319 331 38 30 chr5 117108011 117108142 -35429117 - MLT1A1 LTR MaLR -197 211 80 2 1478 255 358 108 36 chr5 117108415 117108885 -35428374 + L2b LINE L2 2579 3082 -337 2 1478 415 231 42 17 chr5 117109059 117109178 -35428081 - Lx6 LINE L1 -26 7434 7313 2 1478 944 234 51 30 chr5 117109175 117109494 -35427765 - Lx6 LINE L1 -275 7185 6788 2 1478 227 310 57 52 chr5 117109501 117109635 -35427624 + L2b LINE L2 3258 3387 0 2 1478 714 268 52 0 chr5 117109751 117109945 -35427314 - ID_B1 SINE B4 -1 223 20 2 1478 1406 243 46 9 chr5 117110044 117110368 -35426891 + MTD LTR MaLR 7 342 -77 2 1478 384 82 0 0 chr5 117110497 117110558 -35426701 + (TTG)n Simple_repeat Simple_repeat 1 61 0 2 1478 21 0 0 0 chr5 117110589 117110610 -35426649 + AT_rich Low_complexity Low_complexity 1 21 0 2 1478 313 304 65 0 chr5 117110848 117110940 -35426319 - MIRc SINE MIR -27 241 144 2 1478 568 296 184 77 chr5 117111315 117111821 -35425438 + RMER15 LTR ERVL 16 575 0 2 1478 211 240 20 0 chr5 117111849 117111899 -35425360 - MIR SINE MIR -68 140 90 2 1478 441 329 94 21 chr5 117112839 117113072 -35424187 - MIR SINE MIR -5 257 8 2 1478 242 211 13 45 chr5 117113337 117113491 -35423768 + GA-rich Low_complexity Low_complexity 1 149 0 2 1478 315 0 0 0 chr5 117113729 117113764 -35423495 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1478 291 114 0 0 chr5 117113767 117113811 -35423448 + (AGGGGG)n Simple_repeat Simple_repeat 1 44 0 2 1478 266 0 29 0 chr5 117114841 117114875 -35422384 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1478 2733 46 3 12 chr5 117116404 117116734 -35420525 - ORR1A2 LTR MaLR 0 327 1 2 1478 201 74 0 0 chr5 117116863 117116890 -35420369 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1478 796 263 23 0 chr5 117116903 117117078 -35420181 - B3A SINE B2 -18 180 2 2 1478 302 116 0 28 chr5 117117453 117117524 -35419735 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 2 1478 459 0 0 0 chr5 117117525 117117576 -35419683 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1478 259 294 82 0 chr5 117117923 117118008 -35419251 - ORR1D2 LTR MaLR -255 115 24 2 1478 207 200 0 0 chr5 117118645 117118690 -35418569 + T-rich Low_complexity Low_complexity 1 45 0 2 1478 1009 193 26 36 chr5 117118944 117119138 -35418121 + B3 SINE B2 3 194 -22 2 1478 1345 197 164 27 chr5 117120012 117120178 -35417081 + MTD LTR MaLR 5 198 -221 2 1478 315 0 0 0 chr5 117120178 117120213 -35417046 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 1478 504 0 0 0 chr5 117120213 117120269 -35416990 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1478 1345 206 157 28 chr5 117120269 117120462 -35416797 + MTD LTR MaLR 199 421 0 2 1478 12647 81 19 44 chr5 117120905 117122760 -35414499 - RLTR22_Mus LTR ERVK 0 1808 1 2 1478 473 284 72 21 chr5 117122891 117123128 -35414131 - L1_Rod LINE L1 -633 5214 4966 2 1478 399 186 19 10 chr5 117123158 117123261 -35413998 + CT-rich Low_complexity Low_complexity 3 106 0 2 1478 270 0 0 0 chr5 117123267 117123297 -35413962 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1478 651 256 38 6 chr5 117123426 117123498 -35413761 + ID SINE ID 8 84 -140 2 1478 294 342 36 0 chr5 117123498 117123609 -35413650 + PB1D10 SINE Alu 3 117 0 2 1478 507 319 74 22 chr5 117123744 117124055 -35413204 - MLT1E LTR MaLR 0 654 330 2 1478 263 385 0 0 chr5 117124117 117124195 -35413064 - MLT1E LTR MaLR -471 89 12 2 1478 275 309 111 18 chr5 117124317 117124488 -35412771 + MIRb SINE MIR 11 197 -71 2 1478 216 334 85 120 chr5 117126759 117127218 -35410041 - L2b LINE L2 0 3375 2933 2 1478 2991 147 9 46 chr5 117128216 117128764 -35408495 + RLTR11A LTR ERVK 1 528 0 2 1478 1073 267 64 52 chr5 117128880 117128956 -35408303 - ORR1E LTR MaLR -10 349 274 2 1478 378 0 0 0 chr5 117128956 117128998 -35408261 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1478 306 0 0 0 chr5 117128998 117129032 -35408227 + (TTAG)n Simple_repeat Simple_repeat 3 36 0 2 1478 1073 267 64 52 chr5 117129032 117129298 -35407961 - ORR1E LTR MaLR -86 273 3 2 1478 280 269 15 15 chr5 117129840 117129908 -35407351 + ID4_ SINE ID 2 69 -14 2 1478 274 340 6 113 chr5 117130819 117130978 -35406281 + MamRep564 Unknown Unknown 19 160 -197 2 1478 685 324 152 97 chr5 117131024 117131530 -35405729 + MLT1H LTR MaLR 1 534 -15 2 1478 495 0 0 0 chr5 117131736 117131791 -35405468 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1478 321 47 0 0 chr5 117131934 117131977 -35405282 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 2 1478 330 184 0 0 chr5 117132206 117132282 -35404977 + CT-rich Low_complexity Low_complexity 1 76 0 2 1478 194 0 39 0 chr5 117132347 117132373 -35404886 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1478 216 0 0 0 chr5 117132935 117132959 -35404300 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 2 1478 16524 45 13 0 chr5 117133062 117135778 -35401481 - L1Md_F2 LINE L1 -12 6570 3817 2 1478 28 0 0 0 chr5 117136297 117136325 -35400934 + AT_rich Low_complexity Low_complexity 1 28 0 2 1478 547 298 0 37 chr5 117136338 117136474 -35400785 - B1F1 SINE Alu -2 147 17 2 1478 493 356 129 43 chr5 117136499 117136919 -35400340 + LTR83 LTR ERVL 252 707 -73 2 1478 265 278 0 0 chr5 117138054 117138108 -35399151 + polypurine Low_complexity Low_complexity 2 55 0 2 1478 340 312 88 84 chr5 117138829 117139102 -35398157 - ORR1E LTR MaLR -4 355 82 2 1478 182 150 25 0 chr5 117139103 117139143 -35398116 + G-rich Low_complexity Low_complexity 2 42 0 2 1478 267 218 0 18 chr5 117139181 117139237 -35398022 - MIR SINE MIR -71 137 83 2 1478 504 330 8 108 chr5 117139780 117140031 -35397228 + B4A SINE B4 67 292 0 2 1478 206 174 22 0 chr5 117140069 117140115 -35397144 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1478 423 328 9 9 chr5 117141368 117141482 -35395777 + PB1D10 SINE Alu 4 117 0 2 1478 232 296 194 22 chr5 117141482 117141541 -35395718 + B4A SINE B4 101 292 0 2 1478 260 254 8 0 chr5 117141546 117141664 -35395595 + (CA)n Simple_repeat Simple_repeat 2 120 0 2 1478 330 26 0 0 chr5 117141683 117141722 -35395537 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1478 189 349 68 68 chr5 117142080 117142197 -35395062 + L2b LINE L2 3237 3353 -22 2 1478 21 0 0 0 chr5 117142225 117142246 -35395013 + GC_rich Low_complexity Low_complexity 1 21 0 2 1478 211 337 104 19 chr5 117143007 117143113 -35394146 + MIR SINE MIR 35 149 -113 2 1478 476 228 27 71 chr5 117143160 117143379 -35393880 + B4 SINE B4 28 288 -4 2 1478 588 148 35 17 chr5 117143647 117143819 -35393440 + CT-rich Low_complexity Low_complexity 3 177 0 2 1478 631 231 10 16 chr5 117144384 117144697 -35392562 + GA-rich Low_complexity Low_complexity 1 310 0 2 1478 26 0 0 0 chr5 117144827 117144853 -35392406 + AT_rich Low_complexity Low_complexity 1 26 0 2 1478 303 28 0 0 chr5 117144876 117144912 -35392347 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1478 459 262 108 51 chr5 117144967 117145124 -35392135 - B3A SINE B2 -6 192 27 2 1478 333 0 0 0 chr5 117145430 117145467 -35391792 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1478 302 328 26 0 chr5 117145907 117146023 -35391236 - Tigger14a DNA MER2_type -85 239 121 3 1478 1108 232 91 55 chr5 117146579 117146887 -35390372 - MTEa LTR MaLR -5 374 61 3 1478 480 18 0 0 chr5 117146887 117146944 -35390315 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1478 1108 232 91 55 chr5 117146944 117146996 -35390263 - MTEa LTR MaLR -319 60 3 3 1478 209 243 0 0 chr5 117147319 117147356 -35389903 - L2c LINE L2 -228 3159 3123 3 1478 3337 307 65 62 chr5 117147453 117149040 -35388219 + Lx8 LINE L1 5701 7292 -181 3 1478 243 0 0 0 chr5 117149054 117149081 -35388178 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1478 744 331 109 16 chr5 117149212 117149770 -35387489 + L1MB5 LINE L1 5286 5895 -279 3 1478 230 226 108 42 chr5 117149969 117150089 -35387170 + L1MB5 LINE L1 5934 6061 -117 3 1478 342 214 0 0 chr5 117151305 117151394 -35385865 + (CACCAT)n Simple_repeat Simple_repeat 1 89 0 3 1478 261 297 181 41 chr5 117151399 117151620 -35385639 - MIR SINE MIR -1 261 10 3 1478 774 258 71 84 chr5 117152194 117152490 -35384769 - B4 SINE B4 0 292 1 3 1478 336 206 0 0 chr5 117152492 117152623 -35384636 + CT-rich Low_complexity Low_complexity 2 132 0 3 1478 392 206 7 0 chr5 117152656 117152802 -35384457 + CT-rich Low_complexity Low_complexity 2 148 0 3 1478 294 248 102 95 chr5 117153443 117153590 -35383669 + LTR16E1 LTR ERVL 364 511 -27 3 1478 2367 88 22 0 chr5 117153722 117154040 -35383219 - ORR1A2 LTR MaLR -2 325 1 3 1478 207 275 0 0 chr5 117154181 117154221 -35383038 + MER91B DNA Tip100 26 65 -125 3 1478 660 308 199 48 chr5 117154282 117154654 -35382605 - MLT2F LTR ERVL -235 428 1 3 1478 634 288 58 40 chr5 117155310 117155365 -35381894 - B4 SINE B4 -17 275 224 3 1478 450 0 0 0 chr5 117155365 117155415 -35381844 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 3 1478 634 288 58 40 chr5 117155415 117155583 -35381676 - B4 SINE B4 -69 223 50 3 1478 2483 125 49 0 chr5 117155636 117155684 -35381575 - MTC LTR MaLR -17 404 355 3 1478 198 0 0 0 chr5 117155684 117155706 -35381553 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 3 1478 2483 125 49 0 chr5 117155706 117156042 -35381217 - MTC LTR MaLR -67 354 2 3 1478 216 250 0 0 chr5 117156043 117156083 -35381176 - B4A SINE B4 -252 40 1 3 1478 521 291 155 26 chr5 117156209 117156513 -35380746 - RLTR15 LTR ERVK -16 343 1 3 1478 208 91 0 43 chr5 117157413 117157459 -35379800 + (TGGGGG)n Simple_repeat Simple_repeat 3 46 0 3 1478 395 290 80 0 chr5 117157460 117157560 -35379699 + RSINE1 SINE B4 2 109 -56 3 1478 288 0 0 0 chr5 117157561 117157593 -35379666 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1478 192 125 0 0 chr5 117157854 117157886 -35379373 + (CCCCCG)n Simple_repeat Simple_repeat 6 37 0 3 1478 383 0 0 21 chr5 117158400 117158448 -35378811 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1478 190 111 89 0 chr5 117158759 117158804 -35378455 + G-rich Low_complexity Low_complexity 3 51 0 3 1478 334 255 130 43 chr5 117159313 117159428 -35377831 + RSINE1 SINE B4 3 127 -38 3 1478 348 24 0 0 chr5 117159466 117159507 -35377752 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1478 887 249 69 5 chr5 117159529 117159731 -35377528 + B3 SINE B2 2 216 0 3 1478 513 0 0 0 chr5 117160311 117160368 -35376891 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1478 346 242 0 0 chr5 117160395 117160461 -35376798 + B4 SINE B4 131 196 -96 3 1478 541 253 65 110 chr5 117160485 117160634 -35376625 + B3A SINE B2 5 164 -34 3 1478 434 103 13 0 chr5 117160634 117160712 -35376547 + (CA)n Simple_repeat Simple_repeat 1 79 0 3 1478 541 253 65 110 chr5 117160712 117160762 -35376497 + B3A SINE B2 165 195 -3 3 1478 1272 179 14 0 chr5 117160793 117161011 -35376248 + URR1B DNA MER1_type 5 225 0 3 1478 396 0 0 0 chr5 117161058 117161102 -35376157 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1478 722 164 6 0 chr5 117161394 117161559 -35375700 + (TG)n Simple_repeat Simple_repeat 2 167 0 3 1478 239 268 0 10 chr5 117161933 117162031 -35375228 + (CA)n Simple_repeat Simple_repeat 2 98 0 3 1478 291 121 0 0 chr5 117162035 117162093 -35375166 + (T)n Simple_repeat Simple_repeat 1 58 0 3 1478 646 279 116 28 chr5 117162827 117163078 -35374181 - B4A SINE B4 -19 273 1 3 1478 954 269 29 84 chr5 117163139 117163528 -35373731 + MTE2a LTR MaLR 16 391 -30 3 1478 758 229 23 92 chr5 117163677 117163935 -35373324 + MTEa LTR MaLR 106 377 -2 3 1478 320 111 19 0 chr5 117163936 117163990 -35373269 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 1478 224 152 0 21 chr5 117163990 117164037 -35373222 + GA-rich Low_complexity Low_complexity 2 47 0 3 1478 186 43 0 0 chr5 117164108 117164131 -35373128 + (TCCCC)n Simple_repeat Simple_repeat 1 23 0 3 1478 339 248 198 50 chr5 117164162 117164400 -35372859 - B4A SINE B4 -17 275 3 3 1478 216 293 13 39 chr5 117165697 117165775 -35371484 - MIR SINE MIR -77 185 110 3 1478 380 308 29 0 chr5 117165948 117166052 -35371207 - PB1D10 SINE Alu -7 110 4 3 1478 229 282 11 96 chr5 117165974 117166068 -35371191 - MT2B2 LTR ERVL -342 242 157 3 1478 262 285 75 78 chr5 117166307 117166475 -35370784 + B3A SINE B2 14 198 0 3 1478 1397 229 31 44 chr5 117166529 117166844 -35370415 - MTE2b LTR MaLR 0 379 72 3 1478 264 30 0 0 chr5 117166844 117166877 -35370382 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 1478 513 0 0 0 chr5 117166877 117166934 -35370325 + (GA)n Simple_repeat Simple_repeat 1 57 0 3 1478 1397 229 31 44 chr5 117166934 117167001 -35370258 - MTE2b LTR MaLR -308 71 2 3 1478 271 274 45 36 chr5 117168289 117168399 -35368860 + PB1D10 SINE Alu 1 111 -6 3 1478 644 281 90 40 chr5 117168417 117168695 -35368564 + B4A SINE B4 1 292 0 3 1478 254 292 14 0 chr5 117170292 117170364 -35366895 + GA-rich Low_complexity Low_complexity 3 75 0 3 1478 194 214 226 0 chr5 117170478 117170562 -35366697 + MER5A DNA MER1_type 10 112 -77 3 1478 636 251 65 23 chr5 117170677 117170893 -35366366 + RMER15 LTR ERVL 220 444 -131 3 1478 2284 87 22 0 chr5 117170893 117171204 -35366055 + ORR1A3 LTR MaLR 1 318 -8 3 1478 422 184 39 48 chr5 117171208 117171311 -35365948 + RMER15 LTR ERVL 440 541 -34 3 1478 474 101 0 0 chr5 117171316 117171385 -35365874 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1478 213 251 0 65 chr5 117172121 117172183 -35365076 + MER5A DNA MER1_type 6 69 -120 3 1478 953 297 21 8 chr5 117173053 117173291 -35363968 + B4A SINE B4 38 278 -14 3 1478 459 0 0 0 chr5 117173293 117173344 -35363915 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1478 585 175 7 14 chr5 117173741 117173880 -35363379 + (TA)n Simple_repeat Simple_repeat 2 139 0 3 1478 289 218 37 49 chr5 117173902 117174113 -35363146 + (TA)n Simple_repeat Simple_repeat 1 208 0 3 1478 304 159 42 35 chr5 117174131 117174274 -35362985 + (TA)n Simple_repeat Simple_repeat 2 145 0 3 1478 429 237 6 12 chr5 117174320 117174491 -35362768 + (TA)n Simple_repeat Simple_repeat 2 171 0 3 1478 373 23 0 0 chr5 117174491 117174534 -35362725 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1478 180 83 0 0 chr5 117176116 117176140 -35361119 + MIR SINE MIR 117 140 -68 3 1478 333 385 60 48 chr5 117176166 117176501 -35360758 - LTR85c LTR Gypsy? -1 822 459 3 1478 3518 23 5 0 chr5 117176501 117176895 -35360364 + MTA_Mm LTR MaLR 1 396 0 3 1478 8854 43 24 1 chr5 117176895 117177968 -35359291 + MTA_Mm-int LTR MaLR 1 1098 0 3 1478 3379 30 8 0 chr5 117177968 117178361 -35358898 + MTA_Mm LTR MaLR 1 396 0 3 184 251 408 55 66 chr5 117178361 117178510 -35358749 - LTR85c LTR Gypsy? -326 458 313 3 1479 436 230 112 26 chr5 117178703 117178855 -35358404 - MER117 DNA MER1_type -32 165 1 3 1479 632 302 119 11 chr5 117178970 117179231 -35358028 + B4A SINE B4 2 290 -2 3 1479 207 337 11 22 chr5 117179478 117179569 -35357690 + L2c LINE L2 3057 3146 -241 3 1479 239 143 0 0 chr5 117179737 117179772 -35357487 + L2b LINE L2 3334 3368 -7 3 1479 234 128 26 0 chr5 117179828 117179867 -35357392 + MIRb SINE MIR 213 252 -16 3 1479 293 312 10 10 chr5 117179904 117180001 -35357258 - MIRb SINE MIR -57 211 115 3 1479 762 22 0 0 chr5 117180399 117180491 -35356768 + (CA)n Simple_repeat Simple_repeat 2 93 0 3 1479 1866 106 156 0 chr5 117180535 117180818 -35356441 - ORR1A2 LTR MaLR 0 327 1 3 1479 293 301 57 97 chr5 117182045 117182273 -35354986 + Charlie18a DNA MER1_type 108 326 -16 3 1479 237 317 39 121 chr5 117182284 117182535 -35354724 - L2c LINE L2 -157 3230 2988 3 1479 1693 75 8 25 chr5 117182668 117182913 -35354346 - L1Md_F2 LINE L1 -12 6570 6330 3 1479 1305 239 73 18 chr5 117183332 117183673 -35353586 - MTE2b LTR MaLR -2 377 18 3 1479 216 0 0 0 chr5 117184031 117184055 -35353204 + (A)n Simple_repeat Simple_repeat 1 24 0 3 1479 434 356 86 18 chr5 117184223 117184443 -35352816 + LTR16A LTR ERVL 121 355 -96 3 1479 523 179 35 9 chr5 117184454 117184567 -35352692 + ORR1A2 LTR MaLR 1 116 -211 3 1479 1942 115 3 17 chr5 117184560 117184853 -35352406 + ORR1A2 LTR MaLR 29 317 -10 3 1479 241 256 71 35 chr5 117185727 117185812 -35351447 + L2a LINE L2 3050 3137 -250 3 1479 1183 276 84 17 chr5 117185935 117186003 -35351256 - MTE2b LTR MaLR -10 369 302 3 1479 1068 199 86 19 chr5 117186003 117186213 -35351046 + URR1B DNA MER1_type 1 224 -1 3 1479 1183 276 84 17 chr5 117186213 117186490 -35350769 - MTE2b LTR MaLR -78 301 2 3 1479 266 315 74 34 chr5 117186736 117186884 -35350375 + L2a LINE L2 3269 3422 -4 3 1479 243 306 0 40 chr5 117187220 117187295 -35349964 + ID4_ SINE ID 2 73 -10 3 1479 3790 179 26 33 chr5 117187459 117188458 -35348801 - RMER17B LTR ERVK 0 958 12 3 1479 432 0 0 0 chr5 117188494 117188542 -35348717 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1479 6721 53 1 0 chr5 117188577 117189388 -35347871 - L1Md_F2 LINE L1 -12 6570 5759 3 1479 1034 251 56 31 chr5 117189395 117189753 -35347506 + Lx8 LINE L1 6868 7234 -239 3 1479 276 137 0 0 chr5 117189801 117189852 -35347407 + (GA)n Simple_repeat Simple_repeat 1 51 0 3 1479 547 256 14 7 chr5 117190143 117190438 -35346821 + (CA)n Simple_repeat Simple_repeat 1 297 0 3 1479 506 268 11 23 chr5 117190441 117190617 -35346642 + (CATATA)n Simple_repeat Simple_repeat 4 177 0 3 1479 348 165 22 11 chr5 117190678 117190770 -35346489 + (CA)n Simple_repeat Simple_repeat 2 94 0 3 1479 293 215 262 0 chr5 117190935 117191042 -35346217 + MIRb SINE MIR 67 201 -67 3 1479 303 335 107 32 chr5 117191120 117191336 -35345923 - L2c LINE L2 -4 3383 3152 3 1479 416 346 101 69 chr5 117191547 117191864 -35345395 - MER44A DNA MER2_type -1 338 12 3 1479 692 334 75 21 chr5 117191876 117192249 -35345010 - MLT1C LTR MaLR -33 434 42 3 1479 240 335 99 63 chr5 117192256 117192298 -35344961 + B4A SINE B4 1 50 -242 4 1479 920 242 67 162 chr5 117192298 117192717 -35344542 + MTE2b LTR MaLR 1 379 0 4 1479 240 335 99 63 chr5 117192717 117192865 -35344394 + B4A SINE B4 51 198 -94 4 1479 943 305 85 59 chr5 117193310 117193732 -35343527 + MLT1F2 LTR MaLR 27 459 -101 4 1479 217 396 30 0 chr5 117193890 117193991 -35343268 - L2c LINE L2 -241 3134 3031 3 1479 341 340 19 0 chr5 117193994 117194100 -35343159 - L2b LINE L2 -3 3372 3265 4 1479 201 298 18 0 chr5 117194213 117194270 -35342989 + MIRb SINE MIR 117 174 -94 4 1479 429 109 0 0 chr5 117194881 117194945 -35342314 + (TTA)n Simple_repeat Simple_repeat 3 66 0 4 1479 326 345 34 34 chr5 117195129 117195327 -35341932 - MIR SINE MIR -10 258 50 4 1479 611 379 0 9 chr5 117195337 117195563 -35341696 - MER58A DNA MER1_type 0 224 1 4 1479 599 250 28 84 chr5 117195813 117195992 -35341267 + B3A SINE B2 30 198 0 4 1479 459 0 0 0 chr5 117196487 117196538 -35340721 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1479 277 261 100 0 chr5 117196566 117196696 -35340563 + Lx9 LINE L1 7384 7526 -118 4 1479 249 98 0 0 chr5 117197058 117197099 -35340160 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 4 1479 330 338 106 20 chr5 117197608 117197759 -35339500 + MER20 DNA MER1_type 55 218 -1 4 1479 327 345 35 97 chr5 117197798 117198055 -35339204 - L2a LINE L2 0 3426 3147 4 1479 1319 76 6 0 chr5 117198249 117198420 -35338839 + B2_Mm2 SINE B2 1 172 -23 4 1479 180 143 0 0 chr5 117198680 117198722 -35338537 + (CAG)n Simple_repeat Simple_repeat 2 43 0 4 1479 305 292 176 69 chr5 117198748 117199094 -35338165 - L2a LINE L2 -668 2751 2369 4 1479 612 298 180 5 chr5 117199150 117199356 -35337903 + B4A SINE B4 48 289 -3 4 1479 288 252 81 81 chr5 117199483 117199521 -35337738 - MTD LTR MaLR 0 379 342 4 1479 3381 36 5 8 chr5 117199521 117199918 -35337341 + MTA_Mm LTR MaLR 1 396 0 4 1479 391 188 86 68 chr5 117199918 117199985 -35337274 - MTD LTR MaLR -59 360 270 4 1479 2047 135 3 58 chr5 117199985 117200330 -35336929 + ORR1A3 LTR MaLR 1 326 0 4 1479 391 199 85 70 chr5 117200330 117200383 -35336876 - MTD LTR MaLR -111 308 221 4 1479 624 307 58 31 chr5 117200420 117200679 -35336580 - MTD LTR MaLR -149 270 5 4 1479 292 309 86 29 chr5 117201040 117201180 -35336079 + MER117 DNA MER1_type 1 148 -49 4 1479 414 348 111 32 chr5 117201231 117201608 -35335651 - L1MC LINE L1 -2366 3780 3374 4 1479 183 42 0 0 chr5 117201736 117201760 -35335499 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1479 192 276 37 73 chr5 117202375 117202457 -35334802 - L2a LINE L2 -284 3142 3064 4 1479 258 340 46 19 chr5 117203118 117203226 -35334033 + L2b LINE L2 2643 2753 -666 4 1479 1357 140 4 86 chr5 117203241 117203484 -35333775 + URR1A DNA MER1_type 1 223 -3 4 1479 244 375 32 15 chr5 117203598 117203769 -35333490 + L2b LINE L2 2950 3120 -306 4 1479 946 237 68 145 chr5 117205141 117205535 -35331724 + MTE2a LTR MaLR 3 366 -13 4 1479 396 266 43 34 chr5 117207023 117207083 -35330176 - B3 SINE B2 -5 211 150 4 1479 355 38 38 0 chr5 117207083 117207136 -35330123 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1479 396 266 43 34 chr5 117207136 117207192 -35330067 - B3 SINE B2 -67 149 94 4 1479 201 265 230 20 chr5 117207310 117207410 -35329849 - MIRc SINE MIR -122 146 26 4 1479 334 247 40 40 chr5 117207779 117207880 -35329379 + MTEa LTR MaLR 274 374 -5 4 1479 387 0 0 0 chr5 117209273 117209316 -35327943 + (TC)n Simple_repeat Simple_repeat 1 43 0 4 1479 189 0 0 0 chr5 117209316 117209336 -35327923 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1479 561 263 6 38 chr5 117209409 117209567 -35327692 - RSINE1 SINE B4 -10 155 3 4 1479 791 206 39 39 chr5 117209609 117209791 -35327468 - B3A SINE B2 -16 182 1 4 1479 190 352 14 0 chr5 117209978 117210049 -35327210 - L2a LINE L2 -36 3390 3319 4 1479 22 0 0 0 chr5 117210233 117210255 -35327004 + AT_rich Low_complexity Low_complexity 1 22 0 4 1479 425 325 64 35 chr5 117210274 117210446 -35326813 + MLT1A0 LTR MaLR 1 177 -188 4 1479 492 302 41 63 chr5 117210457 117210726 -35326533 - Lx8 LINE L1 -90 7383 7121 4 1479 224 381 0 6 chr5 117210976 117211066 -35326193 + L2a LINE L2 2955 3045 -381 4 1479 216 0 0 0 chr5 117211067 117211091 -35326168 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1479 241 321 65 7 chr5 117211244 117211382 -35325877 - MamRep605 Unknown Unknown -129 747 602 4 1479 509 189 82 102 chr5 117211472 117211678 -35325581 - B3 SINE B2 -10 206 5 4 1479 201 171 0 0 chr5 117211678 117211713 -35325546 + (TTA)n Simple_repeat Simple_repeat 3 37 0 4 1479 237 338 57 29 chr5 117212089 117212229 -35325030 - MIRb SINE MIR -1 267 124 4 1479 352 213 87 32 chr5 117212646 117212772 -35324487 - MamRep605 Unknown Unknown -588 288 156 4 1479 214 324 34 46 chr5 117212823 117212980 -35324279 + MIRb SINE MIR 1 169 -93 4 1479 2598 74 3 0 chr5 117214105 117214431 -35322828 + ORR1A2 LTR MaLR 1 327 0 4 1479 1071 206 26 0 chr5 117214565 117214759 -35322500 + B3 SINE B2 1 199 -17 4 1479 566 39 0 13 chr5 117215193 117215271 -35321988 + (GGA)n Simple_repeat Simple_repeat 1 77 0 4 1479 539 222 0 106 chr5 117215457 117215598 -35321661 + B1_Mur1 SINE Alu 1 126 -23 4 1479 702 207 6 11 chr5 117215747 117215928 -35321331 + CT-rich Low_complexity Low_complexity 1 180 0 4 1479 331 195 217 8 chr5 117215928 117216057 -35321202 - HAL1-3A_ME LINE L1 -419 2439 2284 4 1479 944 164 6 0 chr5 117216057 117216234 -35321025 + CT-rich Low_complexity Low_complexity 3 180 0 4 1479 958 267 157 8 chr5 117216338 117216701 -35320558 - Lx8 LINE L1 -244 7229 6813 4 1479 266 319 14 0 chr5 117216734 117216806 -35320453 + ID2 SINE ID 2 74 -9 4 1479 195 42 0 0 chr5 117216843 117216867 -35320392 + (TAA)n Simple_repeat Simple_repeat 1 24 0 4 1479 349 242 44 52 chr5 117217066 117217201 -35320058 + L1M5 LINE L1 4539 4672 -1474 4 1479 2226 127 0 29 chr5 117217223 117217571 -35319688 - ORR1A1 LTR MaLR -8 338 1 4 1479 322 357 73 64 chr5 117217659 117217988 -35319271 + L1M2 LINE L1 4781 5112 -1031 4 1479 3528 15 8 0 chr5 117218103 117218496 -35318763 - MTA_Mm LTR MaLR 0 396 1 4 1479 9267 33 5 1 chr5 117218496 117219590 -35317669 - MTA_Mm-int LTR MaLR 0 1098 1 4 1479 3528 15 8 0 chr5 117219590 117219983 -35317276 - MTA_Mm LTR MaLR 0 396 1 4 1479 187 240 20 20 chr5 117220091 117220142 -35317117 - MIRb SINE MIR -29 239 189 4 1479 255 221 250 8 chr5 117220878 117221006 -35316253 - ORR1E LTR MaLR -37 342 184 4 1479 313 317 74 16 chr5 117221046 117221168 -35316091 - ORR1E LTR MaLR -228 131 3 4 1479 220 208 0 0 chr5 117221210 117221263 -35315996 + T-rich Low_complexity Low_complexity 1 53 0 4 1479 265 218 18 0 chr5 117221917 117221972 -35315287 + MIRb SINE MIR 146 201 -67 4 1479 466 224 13 0 chr5 117222204 117222356 -35314903 + (TA)n Simple_repeat Simple_repeat 2 155 0 4 1479 213 65 0 0 chr5 117222712 117222743 -35314516 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1479 593 225 0 0 chr5 117222781 117222901 -35314358 + PB1D9 SINE Alu 1 120 0 4 1479 247 262 40 0 chr5 117224379 117224469 -35312790 + GA-rich Low_complexity Low_complexity 1 93 0 4 1479 182 132 53 0 chr5 117224522 117224560 -35312699 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 4 1479 657 119 0 0 chr5 117224585 117224686 -35312573 + (GGAA)n Simple_repeat Simple_repeat 4 104 0 4 1479 220 256 87 79 chr5 117224738 117224865 -35312394 - B3 SINE B2 0 216 89 4 1479 753 218 106 71 chr5 117225089 117225371 -35311888 + B4A SINE B4 1 292 0 4 1479 917 262 14 10 chr5 117225444 117225652 -35311607 + B3 SINE B2 8 216 0 4 1479 234 314 79 51 chr5 117225654 117225832 -35311427 + L1MD LINE L1 5357 5539 -2456 4 1479 263 318 150 30 chr5 117225965 117226231 -35311028 + L1ME3 LINE L1 5714 6011 -151 4 1479 1028 135 165 40 chr5 117226259 117226459 -35310800 - URR1B DNA MER1_type 0 225 1 4 1479 608 241 179 0 chr5 117226543 117226688 -35310571 + B3A SINE B2 1 171 -27 4 1479 3507 28 2 0 chr5 117226753 117227148 -35310111 - MTA_Mm LTR MaLR 0 396 1 4 1479 798 186 21 0 chr5 117227535 117227675 -35309584 - B1_Mur2 SINE Alu -5 144 2 4 1479 314 329 51 42 chr5 117227856 117228092 -35309167 + MIR SINE MIR 35 267 -1 4 1479 345 171 0 0 chr5 117228113 117228201 -35309058 + CT-rich Low_complexity Low_complexity 1 88 0 4 1479 371 333 68 58 chr5 117228323 117228807 -35308452 + L1M4b LINE L1 408 896 -6438 4 1479 512 333 0 0 chr5 117228870 117229002 -35308257 + RSINE1 SINE B4 2 133 -32 4 1479 406 339 39 35 chr5 117229029 117229286 -35307973 + L1M4b LINE L1 1155 1412 -5922 4 1479 424 233 73 24 chr5 117229350 117229398 -35307861 + ID_B1 SINE B4 95 223 -1 4 1479 425 160 40 0 chr5 117229398 117229473 -35307786 + B1F SINE Alu 71 148 -1 4 1479 293 325 32 0 chr5 117229480 117229606 -35307653 + L1M4b LINE L1 1458 1587 -5747 4 1479 269 283 80 0 chr5 117229833 117229946 -35307313 + L1M4b LINE L1 1689 1810 -5094 4 1479 609 314 27 0 chr5 117230058 117230243 -35307016 + B3A SINE B2 3 192 -6 4 1479 1159 118 6 6 chr5 117230245 117230416 -35306843 + B2_Mm1t SINE B2 1 171 -22 4 1479 198 0 0 0 chr5 117230420 117230442 -35306817 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 4 1479 2182 232 13 2 chr5 117230506 117230959 -35306300 + Lx6 LINE L1 6977 7434 -26 4 1479 338 221 11 0 chr5 117231060 117231155 -35306104 - Lx9 LINE L1 -2 7642 7547 4 1479 623 285 139 45 chr5 117231419 117232014 -35305245 + L1M4b LINE L1 2659 3309 -4025 4 1479 256 244 129 8 chr5 117232064 117232196 -35305063 + L1M4b LINE L1 3523 3670 -3664 4 1479 540 309 104 20 chr5 117232488 117232739 -35304520 + B4A SINE B4 3 274 -18 4 1479 235 319 14 14 chr5 117232976 117233049 -35304210 - ID4_ SINE ID -6 77 5 4 1479 418 303 127 24 chr5 117233050 117233263 -35303996 + Lx8 LINE L1 7237 7471 -2 4 1479 369 0 0 0 chr5 117233452 117233493 -35303766 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1479 425 156 0 20 chr5 117233504 117233587 -35303672 - L1_Mur3 LINE L1 -471 5409 5305 4 1479 453 19 0 0 chr5 117233750 117233804 -35303455 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1479 428 194 0 30 chr5 117233934 117234067 -35303192 + (TA)n Simple_repeat Simple_repeat 1 129 0 4 1479 609 279 24 14 chr5 117234067 117234254 -35303005 - Lx7 LINE L1 -1937 5759 5583 4 1479 242 275 174 24 chr5 117234710 117234922 -35302337 + RLTR22_Mur LTR ERVK 1207 1450 -398 4 1479 348 339 0 0 chr5 117234937 117235049 -35302210 + (TG)n Simple_repeat Simple_repeat 1 112 0 5 1479 393 301 54 80 chr5 117235063 117235287 -35301972 + RMER12 LTR ERVK 771 988 -334 5 1479 189 195 0 0 chr5 117235291 117235332 -35301927 + (TATATG)n Simple_repeat Simple_repeat 1 41 0 5 1479 554 296 32 49 chr5 117235338 117235523 -35301736 - B3A SINE B2 -16 182 1 5 1479 381 43 0 0 chr5 117235673 117235720 -35301539 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1479 285 253 121 50 chr5 117236324 117236470 -35300789 - MIRb SINE MIR -102 174 23 5 1479 247 352 144 7 chr5 117236597 117236743 -35300516 - MIR SINE MIR -71 191 26 5 1479 190 340 65 59 chr5 117236905 117237074 -35300185 + MIR SINE MIR 79 248 -14 5 1479 593 172 8 0 chr5 117237227 117237349 -35299910 + CT-rich Low_complexity Low_complexity 1 123 0 5 1479 674 222 67 0 chr5 117237440 117237575 -35299684 + B1_Mur3 SINE Alu 1 144 -5 5 1479 737 121 8 0 chr5 117237575 117237699 -35299560 + (GGAA)n Simple_repeat Simple_repeat 4 128 0 5 1479 238 232 13 47 chr5 117237680 117237829 -35299430 + GA-rich Low_complexity Low_complexity 1 144 0 5 1479 675 296 53 18 chr5 117238081 117238363 -35298896 + B4A SINE B4 1 292 0 5 1479 24 0 0 0 chr5 117238648 117238672 -35298587 + AT_rich Low_complexity Low_complexity 1 24 0 5 1479 475 241 6 6 chr5 117238719 117238882 -35298377 + (TG)n Simple_repeat Simple_repeat 1 163 0 5 1479 673 239 48 21 chr5 117238889 117239077 -35298182 - B3 SINE B2 -13 203 11 5 1479 699 309 91 45 chr5 117239867 117240382 -35296877 + L1MC3 LINE L1 7178 7716 -69 5 1479 1059 287 50 98 chr5 117240414 117240812 -35296447 - MTE2b LTR MaLR 0 379 1 5 1479 238 231 30 30 chr5 117241543 117241610 -35295649 + RMER15 LTR ERVL 494 560 -15 5 1479 294 299 50 17 chr5 117241665 117241784 -35295475 + LTR33 LTR ERVL 385 507 -8 5 1479 1202 263 46 81 chr5 117242089 117242482 -35294777 - MTE2a LTR MaLR 0 379 1 5 1479 402 338 73 34 chr5 117242521 117242726 -35294533 - MER74A LTR ERVL 0 558 346 5 1479 296 336 19 9 chr5 117242821 117242926 -35294333 - MER74A LTR ERVL -405 153 48 5 1479 2261 117 41 57 chr5 117243141 117243530 -35293729 + ORR1B1 LTR MaLR 4 386 -8 5 1479 696 56 0 0 chr5 117243534 117243623 -35293636 + (TG)n Simple_repeat Simple_repeat 1 89 0 5 1479 363 262 85 28 chr5 117243629 117243735 -35293524 - B3A SINE B2 -47 151 40 5 1479 320 231 61 71 chr5 117243889 117243987 -35293272 + MLT1K LTR MaLR 143 239 -356 5 1479 470 252 40 80 chr5 117244369 117244520 -35292739 + B3A SINE B2 54 198 0 5 1479 251 221 100 2 chr5 117245301 117245371 -35291888 + MLT1K LTR MaLR 339 444 -4 5 1479 336 344 48 32 chr5 117245405 117245594 -35291665 - MIRb SINE MIR -25 243 52 5 1479 403 261 67 80 chr5 117245841 117245941 -35291318 - Lx8 LINE L1 -116 7357 7265 5 1479 3429 25 2 8 chr5 117245941 117246339 -35290920 + MTA_Mm LTR MaLR 1 396 0 5 1479 403 261 67 80 chr5 117246339 117246388 -35290871 - Lx8 LINE L1 -209 7264 7210 5 1479 349 302 17 8 chr5 117246393 117246510 -35290749 + Lx8 LINE L1 6749 6866 -607 5 1479 530 319 42 30 chr5 117246928 117247164 -35290095 + Lx8 LINE L1 6864 7102 -371 5 1479 2043 108 75 0 chr5 117247712 117248018 -35289241 + ORR1A4 LTR MaLR 1 329 0 5 1479 9610 142 39 120 chr5 117248018 117250155 -35287104 + ORR1A4-int LTR MaLR 1 1963 0 5 1479 2278 72 65 0 chr5 117250155 117250462 -35286797 + ORR1A4 LTR MaLR 1 327 -2 5 1479 308 233 23 23 chr5 117250472 117250560 -35286699 + MIRb SINE MIR 92 179 -89 5 1479 448 313 14 58 chr5 117250688 117250827 -35286432 + B4 SINE B4 160 292 0 5 1479 301 222 160 10 chr5 117250913 117251013 -35286246 - MIR SINE MIR -74 188 74 5 1479 209 362 91 10 chr5 117251014 117251193 -35286066 - MIRb SINE MIR -52 216 22 5 1479 383 307 130 16 chr5 117251235 117251427 -35285832 - MIR SINE MIR -5 257 44 5 1479 243 0 0 0 chr5 117252078 117252105 -35285154 + (TGGG)n Simple_repeat Simple_repeat 1 27 0 5 1479 311 317 222 24 chr5 117252743 117252995 -35284264 - MLT1C LTR MaLR -160 307 6 5 1479 1211 86 0 6 chr5 117254528 117254703 -35282556 + (GAA)n Simple_repeat Simple_repeat 3 176 0 5 1479 360 0 0 0 chr5 117254810 117254850 -35282409 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1479 328 384 25 69 chr5 117254859 117255133 -35282126 + L1MC5 LINE L1 6657 6918 -1043 5 1479 751 260 100 64 chr5 117255133 117255413 -35281846 + B4 SINE B4 3 292 0 5 1479 306 0 0 0 chr5 117255420 117255454 -35281805 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1479 231 320 19 28 chr5 117255568 117255674 -35281585 - MIRb SINE MIR -134 134 30 5 1479 344 287 100 44 chr5 117256179 117256402 -35280857 - RMER15 LTR ERVL -17 558 303 5 1479 230 245 20 0 chr5 117256673 117256722 -35280537 + B1F SINE Alu 1 50 -99 5 1479 913 200 18 29 chr5 117257073 117257243 -35280016 + ORR1B2 LTR MaLR 5 172 -195 5 1479 683 206 0 22 chr5 117257248 117257432 -35279827 + CT-rich Low_complexity Low_complexity 1 180 0 5 1479 1178 158 24 19 chr5 117257468 117257675 -35279584 + ORR1B2 LTR MaLR 160 367 0 5 1479 1144 81 0 0 chr5 117258486 117258634 -35278625 + B1_Mus1 SINE Alu 1 148 0 5 1479 555 118 0 0 chr5 117258634 117258719 -35278540 + (A)n Simple_repeat Simple_repeat 1 85 0 5 1479 234 292 61 8 chr5 117259265 117259396 -35277863 + (TCTCTG)n Simple_repeat Simple_repeat 3 140 0 5 1479 180 97 0 0 chr5 117259809 117259840 -35277419 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 5 1479 937 92 29 0 chr5 117260121 117260294 -35276965 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1479 624 152 11 33 chr5 117260333 117260516 -35276743 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1479 516 152 16 43 chr5 117260546 117260731 -35276528 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1479 319 165 46 0 chr5 117260749 117260858 -35276401 + (TG)n Simple_repeat Simple_repeat 2 115 0 5 1479 257 328 122 20 chr5 117260868 117261064 -35276195 - MLT1C LTR MaLR 0 467 252 5 1479 280 267 40 13 chr5 117261131 117261207 -35276052 - MLT1C LTR MaLR -331 136 59 5 1479 995 260 109 43 chr5 117261360 117261689 -35275570 - MTEa LTR MaLR -25 354 4 5 1479 418 149 35 17 chr5 117261978 117262094 -35275165 + C-rich Low_complexity Low_complexity 2 119 0 5 1479 321 223 142 78 chr5 117262095 117262236 -35275023 - HAL1-3A_ME LINE L1 -420 2438 2289 5 1479 235 260 10 10 chr5 117262305 117262402 -35274857 + C-rich Low_complexity Low_complexity 3 99 0 5 1479 229 283 156 16 chr5 117262529 117262651 -35274608 - MLT1E2 LTR MaLR -474 153 15 5 1479 196 203 0 45 chr5 117262721 117262788 -35274471 + C-rich Low_complexity Low_complexity 2 65 0 5 1479 439 266 45 75 chr5 117262793 117262927 -35274332 - B1F SINE Alu -6 143 14 5 1479 28 29 0 0 chr5 117262944 117262979 -35274280 + AT_rich Low_complexity Low_complexity 1 35 0 5 1479 263 286 0 0 chr5 117263026 117263082 -35274177 - RSINE1 SINE B4 -73 92 37 5 1479 215 346 90 56 chr5 117263142 117263286 -35273973 - MIRb SINE MIR -14 248 100 5 1479 303 301 71 24 chr5 117264686 117264812 -35272447 + LTR16E1 LTR ERVL 369 500 -38 5 1479 288 0 0 0 chr5 117264864 117264896 -35272363 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1479 396 0 0 0 chr5 117264896 117264939 -35272320 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1479 207 246 35 0 chr5 117265496 117265553 -35271706 + (CATA)n Simple_repeat Simple_repeat 4 62 0 5 1479 368 316 18 31 chr5 117265803 117266020 -35271239 + GA-rich Low_complexity Low_complexity 1 214 0 5 1479 191 254 33 17 chr5 117266406 117266466 -35270793 + MER5B DNA MER1_type 3 63 -115 5 1479 651 216 187 13 chr5 117266467 117266622 -35270637 + B3A SINE B2 1 182 -16 5 1479 231 346 48 36 chr5 117267169 117267334 -35269925 + MIRb SINE MIR 26 192 -76 5 1479 1338 187 212 17 chr5 117267425 117267774 -35269485 - MTD LTR MaLR 0 419 3 5 1479 505 147 208 40 chr5 117267793 117267942 -35269317 - Lx7 LINE L1 -49 7647 7474 5 1479 4136 118 141 0 chr5 117267951 117268578 -35268681 - RMER19A LTR ERVK 0 737 27 5 1479 180 0 0 0 chr5 117268578 117268598 -35268661 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 1479 4136 118 141 0 chr5 117268598 117268616 -35268643 - RMER19A LTR ERVK -711 26 2 5 1479 767 231 75 50 chr5 117268649 117268890 -35268369 - Lx8 LINE L1 -1 7472 7226 5 1479 414 307 51 36 chr5 117268968 117269164 -35268095 + L1MA4 LINE L1 5734 5932 -368 5 1479 210 171 0 0 chr5 117269183 117269224 -35268035 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1479 584 173 36 0 chr5 117270114 117270224 -35267035 - ID_B1 SINE B4 -7 217 104 5 1479 372 258 135 0 chr5 117270224 117270313 -35266946 - PB1D10 SINE Alu -16 101 1 5 1479 744 43 0 0 chr5 117270353 117270445 -35266814 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 5 1479 198 344 78 0 chr5 117271994 117272084 -35265175 + MIR SINE MIR 30 126 -136 5 1479 275 350 153 7 chr5 117272595 117272739 -35264520 - MIRb SINE MIR -64 204 40 5 1479 679 221 60 7 chr5 117272830 117272980 -35264279 + RSINE1 SINE B4 4 161 -4 5 1479 692 109 53 27 chr5 117273054 117273392 -35263867 + (TG)n Simple_repeat Simple_repeat 1 347 0 5 1479 1319 97 43 0 chr5 117273840 117274025 -35263234 + B2_Mm2 SINE B2 2 194 -1 5 1479 374 241 0 6 chr5 117274049 117274142 -35263117 + B1F SINE Alu 25 115 -5 5 1479 342 231 239 9 chr5 117274732 117274841 -35262418 - MTEa LTR MaLR -8 371 238 5 1479 1000 249 42 124 chr5 117274837 117275223 -35262036 + MTE2a LTR MaLR 11 364 -15 5 1479 252 277 57 38 chr5 117275171 117275276 -35261983 - LTR86A2 LTR ERVL -42 466 360 5 1479 285 270 134 70 chr5 117275246 117275433 -35261826 - MTEa LTR MaLR -109 250 52 5 1479 354 358 56 32 chr5 117275673 117275924 -35261335 - MIRb SINE MIR -7 261 5 5 1479 2587 193 25 102 chr5 117276089 117276739 -35260520 - RMER19C LTR ERVK -2 609 10 5 1479 1004 286 13 122 chr5 117276817 117277211 -35260048 + MTE2a LTR MaLR 11 361 -18 5 1479 195 366 91 30 chr5 117277220 117277417 -35259842 - MIR SINE MIR -58 210 2 5 1479 450 278 128 33 chr5 117277491 117277807 -35259452 + ORR1E LTR MaLR 1 379 0 5 1479 387 0 0 0 chr5 117278259 117278302 -35258957 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1479 429 20 0 0 chr5 117278302 117278351 -35258908 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1479 255 340 55 67 chr5 117278406 117278570 -35258689 - MIR SINE MIR -79 183 22 5 1479 192 389 99 21 chr5 117278895 117279037 -35258222 - MIRb SINE MIR -76 192 40 6 1479 598 286 20 7 chr5 117279080 117279228 -35258031 - RSINE1 SINE B4 -6 159 10 6 1479 241 352 33 11 chr5 117279774 117279866 -35257393 + L2a LINE L2 3290 3383 -43 6 1479 221 381 0 28 chr5 117280124 117280267 -35256992 + CT-rich Low_complexity Low_complexity 2 140 0 6 1479 534 152 0 0 chr5 117281096 117281188 -35256071 + (TA)n Simple_repeat Simple_repeat 2 93 0 6 1479 301 303 298 14 chr5 117281188 117281562 -35255697 + L2a LINE L2 2824 3334 -92 6 1479 663 48 0 0 chr5 117281562 117281645 -35255614 + (GA)n Simple_repeat Simple_repeat 1 83 0 6 1479 218 302 333 11 chr5 117281645 117281732 -35255527 + L2a LINE L2 3335 3421 -5 6 1479 21 0 0 0 chr5 117282014 117282035 -35255224 + AT_rich Low_complexity Low_complexity 1 21 0 6 1479 388 257 18 28 chr5 117282044 117282172 -35255087 - B3 SINE B2 -16 182 64 6 1479 480 35 0 0 chr5 117282207 117282265 -35254994 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1479 184 359 0 80 chr5 117282338 117282438 -35254821 - L2a LINE L2 -18 3408 3317 6 1479 268 291 112 34 chr5 117282503 117282592 -35254667 + B4 SINE B4 48 143 -149 6 1479 6579 148 45 51 chr5 117283404 117283839 -35253420 - MTC-int LTR MaLR -29 1229 794 6 1479 813 11 0 0 chr5 117283839 117283933 -35253326 + (CTG)n Simple_repeat Simple_repeat 1 94 0 6 1479 6579 148 45 51 chr5 117283933 117284734 -35252525 - MTC-int LTR MaLR -465 793 3 6 1479 2467 165 46 0 chr5 117284738 117285133 -35252126 - MTC LTR MaLR -8 413 1 6 1479 382 234 51 41 chr5 117285137 117285235 -35252024 - MIRb SINE MIR -146 122 24 6 1479 334 341 35 75 chr5 117285482 117285710 -35251549 - ORR1E LTR MaLR -140 219 1 6 1479 240 233 0 0 chr5 117286096 117286139 -35251120 - MER3 DNA MER1_type -165 44 2 6 1479 702 237 9 24 chr5 117286886 117287056 -35250203 - MTD LTR MaLR -14 405 223 6 1479 868 295 38 41 chr5 117287072 117287346 -35249913 - MTD LTR MaLR -123 296 18 6 1479 1796 114 293 9 chr5 117287346 117287674 -35249585 - MTC LTR MaLR 0 421 1 6 1479 868 295 38 41 chr5 117287674 117287692 -35249567 - MTD LTR MaLR -402 17 5 6 1479 898 122 0 8 chr5 117287847 117287979 -35249280 + MTC LTR MaLR 272 402 -19 6 1479 305 219 53 27 chr5 117287977 117288052 -35249207 + MTE2a LTR MaLR 68 144 -235 6 1479 683 74 0 50 chr5 117288468 117288568 -35248691 + B1_Mus2 SINE Alu 47 141 -6 6 1479 875 269 23 0 chr5 117288602 117288821 -35248438 + B4 SINE B4 1 224 -68 6 1479 579 172 71 0 chr5 117288824 117288923 -35248336 + B3 SINE B2 2 107 -109 6 1479 202 205 0 0 chr5 117290156 117290195 -35247064 + A-rich Low_complexity Low_complexity 5 43 0 6 1479 664 234 63 9 chr5 117290206 117290485 -35246774 + L1ME4a LINE L1 5910 6122 -2 6 1479 21 36 0 0 chr5 117290549 117290577 -35246682 + AT_rich Low_complexity Low_complexity 1 28 0 6 1479 193 155 17 17 chr5 117290615 117290674 -35246585 + T-rich Low_complexity Low_complexity 3 61 0 6 1479 287 203 0 13 chr5 117290747 117290822 -35246437 + GA-rich Low_complexity Low_complexity 4 77 0 6 1479 538 84 6 3 chr5 117290846 117290949 -35246310 + RMER17D2 LTR ERVK 379 525 -284 6 1479 291 93 0 0 chr5 117290949 117290992 -35246267 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 6 1479 583 177 219 65 chr5 117291151 117291320 -35245939 + MTEa LTR MaLR 16 210 -169 6 1479 300 280 24 56 chr5 117291404 117291529 -35245730 - RMER15 LTR ERVL -391 184 64 6 1479 505 274 111 103 chr5 117291803 117292303 -35244956 - RMER13A LTR ERVK -25 602 30 6 1479 727 245 93 78 chr5 117292345 117292615 -35244644 + B4A SINE B4 1 274 -18 6 1479 320 203 0 33 chr5 117292664 117292725 -35244534 + MTEa LTR MaLR 311 369 -10 6 1479 908 169 6 0 chr5 117293024 117293202 -35244057 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 6 1479 322 175 0 24 chr5 117294343 117294425 -35242834 + CT-rich Low_complexity Low_complexity 3 82 0 6 1479 190 266 10 21 chr5 117294496 117294592 -35242667 + CT-rich Low_complexity Low_complexity 6 100 0 6 1479 242 279 167 23 chr5 117295083 117295215 -35242044 + L2c LINE L2 3188 3338 -49 6 1479 495 0 0 0 chr5 117295284 117295339 -35241920 + (GA)n Simple_repeat Simple_repeat 1 55 0 6 1479 977 261 7 78 chr5 117296357 117296449 -35240810 + B4 SINE B4 2 80 -212 6 1479 369 0 0 0 chr5 117296449 117296490 -35240769 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1479 977 261 7 78 chr5 117296490 117296704 -35240555 + B4 SINE B4 81 286 -6 6 1479 309 193 124 74 chr5 117297011 117297126 -35240133 - RMER10A LTR ERVL -279 119 1 6 1479 1330 235 121 12 chr5 117297382 117297714 -35239545 - MTD LTR MaLR -34 385 18 6 1479 199 358 23 54 chr5 117297733 117297863 -35239396 - L2a LINE L2 -165 3261 3136 6 1479 584 317 67 42 chr5 117297876 117298116 -35239143 + B4 SINE B4 10 255 -37 6 1479 322 218 51 0 chr5 117298370 117298448 -35238811 + B4 SINE B4 192 273 -19 6 1479 381 22 0 0 chr5 117298502 117298548 -35238711 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1479 249 319 53 20 chr5 117298853 117298973 -35238286 + L2a LINE L2 3255 3425 -1 6 1479 241 322 0 25 chr5 117299090 117299211 -35238048 + C-rich Low_complexity Low_complexity 5 122 0 6 1479 468 0 0 0 chr5 117299213 117299265 -35237994 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1479 231 239 191 15 chr5 117299686 117299754 -35237505 + MIRc SINE MIR 68 147 -61 6 1479 194 128 26 0 chr5 117300433 117300472 -35236787 + (TGGA)n Simple_repeat Simple_repeat 4 43 0 6 1479 1390 68 26 26 chr5 117300563 117300758 -35236501 + B2_Mm2 SINE B2 1 195 0 6 1479 2950 30 78 8 chr5 117300875 117301245 -35236014 - MTA_Mm LTR MaLR 0 396 1 6 1479 598 277 15 56 chr5 117301565 117301833 -35235426 - L1MA6 LINE L1 -1 6299 6043 6 1479 432 0 0 0 chr5 117301896 117301944 -35235315 + (CAGA)n Simple_repeat Simple_repeat 3 50 0 6 1479 860 210 14 80 chr5 117302321 117302533 -35234726 + B3A SINE B2 1 198 0 6 1479 678 314 57 36 chr5 117303951 117304232 -35233027 - B4A SINE B4 0 292 6 6 1479 315 318 103 0 chr5 117304358 117304465 -35232794 + HAL1-3A_ME LINE L1 1901 2018 -840 6 1479 363 44 0 0 chr5 117304471 117304516 -35232743 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1479 288 304 124 9 chr5 117304943 117305056 -35232203 - MLT1J2 LTR MaLR -322 126 1 6 1479 390 250 80 0 chr5 117305175 117305287 -35231972 + B1F SINE Alu 12 132 -17 6 1479 497 138 0 153 chr5 117305511 117305648 -35231611 + ORR1A1 LTR MaLR 1 116 -230 6 1479 213 312 51 43 chr5 117305754 117305871 -35231388 + MIRc SINE MIR 12 129 -139 6 1479 203 314 0 0 chr5 117305911 117305962 -35231297 + MIRm SINE MIR 34 84 -192 6 1479 369 0 0 0 chr5 117306551 117306592 -35230667 + (TC)n Simple_repeat Simple_repeat 2 42 0 6 1479 291 85 0 0 chr5 117306594 117306641 -35230618 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1479 234 308 0 0 chr5 117306703 117306768 -35230491 - ID4_ SINE ID -15 68 4 6 1479 181 222 28 0 chr5 117306824 117306860 -35230399 + MIR SINE MIR 114 153 -115 6 1479 365 322 116 39 chr5 117306900 117307055 -35230204 + MIRb SINE MIR 31 197 -71 6 1479 351 0 0 0 chr5 117307277 117307316 -35229943 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1479 2137 72 16 162 chr5 117308404 117308787 -35228472 - ORR1A2 LTR MaLR 0 327 1 6 1479 374 350 190 21 chr5 117308806 117309095 -35228164 + RMER15 LTR ERVL 238 575 0 6 1479 318 230 75 58 chr5 117309215 117309335 -35227924 - MER74C LTR ERVL -55 405 284 6 184 467 368 67 0 chr5 117309371 117309564 -35227695 - MER74C LTR ERVL -244 216 11 6 1480 242 274 0 0 chr5 117309987 117310038 -35227221 + LTR16C LTR ERVL 435 485 -4 6 1480 223 231 0 55 chr5 117310053 117310108 -35227151 + MIR SINE MIR 81 132 -130 6 1480 272 227 121 0 chr5 117310360 117310426 -35226833 - MLT1M LTR MaLR -6 666 593 6 1480 250 305 105 38 chr5 117311175 117311308 -35225951 + L2a LINE L2 3279 3420 -6 6 1480 408 331 47 24 chr5 117312350 117312999 -35224260 - L1MEe LINE L1 -3981 2601 1899 6 1480 2084 105 14 69 chr5 117313113 117313462 -35223797 - MTC LTR MaLR -6 415 86 6 1480 470 256 70 93 chr5 117313870 117314042 -35223217 + MLT1F-int LTR MaLR 1057 1224 -265 6 1480 992 269 71 7 chr5 117314194 117314490 -35222769 - ORR1D2 LTR MaLR 0 370 56 6 1480 320 325 116 40 chr5 117314572 117314745 -35222514 + L2b LINE L2 3190 3375 0 6 1480 225 0 0 0 chr5 117315236 117315261 -35221998 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 6 1480 272 146 21 0 chr5 117315400 117315448 -35221811 - MER117 DNA MER1_type -49 148 100 6 1480 539 234 115 44 chr5 117315764 117315947 -35221312 + B3A SINE B2 2 197 -1 6 1480 254 245 82 104 chr5 117316006 117316140 -35221119 + B4A SINE B4 9 230 -62 6 1480 477 228 91 32 chr5 117316141 117316295 -35220964 + RSINE1 SINE B4 3 165 0 6 1480 198 0 0 0 chr5 117316763 117316785 -35220474 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 6 1480 617 277 43 0 chr5 117317316 117317457 -35219802 + B3A SINE B2 4 150 -48 6 1480 1365 238 90 42 chr5 117317457 117317857 -35219402 + MTD LTR MaLR 1 419 0 6 1480 240 86 0 0 chr5 117317909 117317944 -35219315 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1480 22 56 0 0 chr5 117317960 117317996 -35219263 + AT_rich Low_complexity Low_complexity 1 36 0 6 1480 932 167 194 0 chr5 117318065 117318245 -35219014 + B3 SINE B2 2 216 0 6 1480 675 302 11 34 chr5 117319123 117319167 -35218092 + B4A SINE B4 43 84 -208 6 1480 234 0 0 0 chr5 117319167 117319193 -35218066 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1480 675 302 11 34 chr5 117319193 117319326 -35217933 + B4A SINE B4 85 216 -76 6 1480 198 0 0 0 chr5 117319326 117319348 -35217911 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 6 1480 1279 97 23 0 chr5 117319352 117319527 -35217732 + B2_Mm1t SINE B2 1 179 -14 6 1480 272 56 56 0 chr5 117319569 117319623 -35217636 + B2_Mm2 SINE B2 137 193 -2 6 1480 303 169 0 222 chr5 117319613 117319712 -35217547 + B4A SINE B4 216 292 0 6 1480 434 209 0 0 chr5 117319861 117319947 -35217312 + B1_Mur4 SINE Alu 44 129 -21 7 1480 500 116 12 0 chr5 117319966 117320052 -35217207 + (TA)n Simple_repeat Simple_repeat 1 87 0 7 1480 2440 68 3 0 chr5 117320052 117320360 -35216899 + ORR1A2 LTR MaLR 19 327 0 7 1480 311 230 327 51 chr5 117320705 117320861 -35216398 + MLT1C LTR MaLR 270 468 -37 7 1480 253 338 111 38 chr5 117320843 117321173 -35216086 - MLT2B3 LTR ERVL -237 480 124 7 1480 3062 69 15 2 chr5 117321173 117321568 -35215691 + MTB LTR MaLR 1 400 0 7 1480 585 265 0 96 chr5 117322876 117322918 -35214341 - RSINE1 SINE B4 0 165 128 7 1480 282 29 0 0 chr5 117322918 117322953 -35214306 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1480 324 0 0 0 chr5 117322953 117322988 -35214271 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1480 378 0 0 0 chr5 117322988 117323029 -35214230 + (GA)n Simple_repeat Simple_repeat 1 42 0 7 1480 585 265 0 96 chr5 117323029 117323130 -35214129 - RSINE1 SINE B4 -38 127 36 7 1480 695 334 45 42 chr5 117323184 117323587 -35213672 + MER20B DNA MER1_type 362 765 -18 7 1480 486 0 0 0 chr5 117323809 117323863 -35213396 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1480 1217 49 0 0 chr5 117323863 117324006 -35213253 - B1_Mm SINE Alu -4 143 1 7 1480 2090 111 28 41 chr5 117324048 117324455 -35212804 - ORR1A2 LTR MaLR 0 394 1 7 1480 282 286 71 0 chr5 117324515 117324585 -35212674 - ID4 SINE ID -3 80 6 7 1480 1484 229 51 34 chr5 117325102 117325455 -35211804 - MTE2b LTR MaLR -3 376 18 7 1480 789 41 0 0 chr5 117325610 117325707 -35211552 + (TG)n Simple_repeat Simple_repeat 2 98 0 7 1480 857 267 27 9 chr5 117328081 117328300 -35208959 - ID_B1 SINE B4 -1 223 1 7 1480 387 182 97 54 chr5 117329208 117329301 -35207958 - MLT1A1 LTR MaLR -6 402 306 7 1480 512 125 0 10 chr5 117329335 117329432 -35207827 + (GA)n Simple_repeat Simple_repeat 1 96 0 7 1480 431 204 152 0 chr5 117329726 117329761 -35207498 + ORR1B1 LTR MaLR 1 35 -359 7 1480 432 0 0 0 chr5 117329761 117329809 -35207450 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1480 431 204 152 0 chr5 117329809 117329897 -35207362 + ORR1B1 LTR MaLR 36 143 -251 7 1480 1920 160 46 48 chr5 117329897 117330292 -35206967 + ORR1B1 LTR MaLR 1 394 0 7 1480 686 225 6 0 chr5 117330888 117331066 -35206193 + (TA)n Simple_repeat Simple_repeat 2 180 0 7 1480 383 254 0 8 chr5 117331077 117331200 -35206059 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 7 1480 522 220 45 27 chr5 117331255 117331367 -35205892 + PB1D9 SINE Alu 2 115 -5 7 1480 466 260 127 63 chr5 117331511 117331716 -35205543 + B4 SINE B4 3 220 -72 7 1480 236 125 0 0 chr5 117332227 117332259 -35205000 - Charlie24 DNA MER1_type -22 2428 2397 7 1480 21 36 0 0 chr5 117332462 117332490 -35204769 + AT_rich Low_complexity Low_complexity 1 28 0 7 1480 485 216 199 15 chr5 117332498 117332634 -35204625 + RSINE1 SINE B4 2 162 -3 7 1480 276 266 128 40 chr5 117332648 117332913 -35204346 - MIR3 SINE MIR -3 273 6 7 1480 1321 232 178 3 chr5 117332953 117333308 -35203951 - MTD LTR MaLR 0 419 3 7 1480 204 310 0 0 chr5 117333512 117333570 -35203689 + (CATA)n Simple_repeat Simple_repeat 4 61 0 7 1480 240 213 0 0 chr5 117333608 117333669 -35203590 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1480 266 219 104 31 chr5 117333673 117333835 -35203424 + MLT1B LTR MaLR 149 341 -49 7 1480 727 178 110 23 chr5 117334180 117334353 -35202906 + B2_Mm2 SINE B2 1 188 -7 7 1480 225 326 18 27 chr5 117334517 117334627 -35202632 + MIR SINE MIR 16 127 -141 7 1480 981 198 0 11 chr5 117334749 117334933 -35202326 - B3A SINE B2 -16 182 1 7 1480 465 277 88 42 chr5 117335044 117335259 -35202000 + L1MB8 LINE L1 5668 5892 -286 7 1480 1040 171 38 33 chr5 117335261 117335473 -35201786 + ID_B1 SINE B4 5 217 -7 7 1480 1938 102 3 33 chr5 117335487 117335792 -35201467 + Lx4A LINE L1 6763 7058 0 7 1480 23 0 0 0 chr5 117335792 117335815 -35201444 + AT_rich Low_complexity Low_complexity 1 23 0 7 1480 252 86 0 0 chr5 117335935 117335970 -35201289 + (GGA)n Simple_repeat Simple_repeat 2 36 0 7 1480 619 261 11 54 chr5 117336010 117336196 -35201063 + ID_B1 SINE B4 2 179 -45 7 1480 378 255 0 78 chr5 117336109 117336224 -35201035 + PB1D10 SINE Alu 12 117 0 7 1480 291 308 131 14 chr5 117336322 117336467 -35200792 - LTR16A LTR ERVL -282 169 8 7 1480 257 392 6 38 chr5 117336708 117336867 -35200392 - L2 LINE L2 -574 2845 2692 7 1480 639 227 12 18 chr5 117337027 117337193 -35200066 + B3A SINE B2 1 165 -33 7 1480 318 232 92 145 chr5 117337393 117337524 -35199735 - B4A SINE B4 -57 235 112 7 1480 228 86 0 0 chr5 117337524 117337559 -35199700 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1480 2345 77 45 0 chr5 117338428 117338741 -35198518 - ORR1A2 LTR MaLR 0 327 1 7 1480 374 374 6 6 chr5 117339700 117339880 -35197379 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1480 2094 94 7 20 chr5 117339884 117340187 -35197072 - ORR1A2 LTR MaLR 0 327 29 7 1480 506 196 4 0 chr5 117340176 117340293 -35196966 - ORR1A2 LTR MaLR -227 119 1 7 1480 246 208 9 38 chr5 117340836 117340941 -35196318 + (TATG)n Simple_repeat Simple_repeat 4 105 0 7 1480 224 273 0 0 chr5 117341343 117341398 -35195861 + G-rich Low_complexity Low_complexity 4 58 0 7 1480 451 291 9 0 chr5 117341731 117341841 -35195418 + MLT2B2 LTR ERVL 4 114 -401 7 1480 986 267 5 5 chr5 117342543 117342761 -35194498 + ID_B1 SINE B4 1 218 -6 7 1480 259 333 136 34 chr5 117342758 117342935 -35194324 - MER2 DNA MER2_type -146 199 5 7 1480 289 282 89 49 chr5 117343067 117343190 -35194069 - L1M5 LINE L1 -603 5521 5394 7 1480 206 0 0 129 chr5 117344607 117344669 -35192590 + (TCTCCC)n Simple_repeat Simple_repeat 4 57 0 7 1480 315 0 0 0 chr5 117345758 117345793 -35191466 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1480 757 280 137 8 chr5 117345797 117346038 -35191221 - B4A SINE B4 -20 272 1 7 1480 409 287 14 126 chr5 117346051 117346087 -35191172 - B2_Mm1t SINE B2 -9 184 152 7 1480 357 24 0 0 chr5 117346087 117346129 -35191130 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1480 450 0 0 0 chr5 117346129 117346179 -35191080 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1480 759 233 13 19 chr5 117346179 117346348 -35190911 - B3A SINE B2 -39 159 1 7 1480 1906 191 87 14 chr5 117347045 117347431 -35189828 + MTD LTR MaLR 5 405 -14 7 1480 829 292 34 67 chr5 117347668 117347965 -35189294 - B4 SINE B4 0 292 6 7 1480 494 117 1 55 chr5 117348723 117348831 -35188428 + ORR1A2 LTR MaLR 1 109 -237 7 1480 1636 141 86 7 chr5 117348867 117349145 -35188114 + ORR1A2 LTR MaLR 28 327 0 7 1480 867 246 0 17 chr5 117349289 117349467 -35187792 - B3A SINE B2 -23 175 1 7 1480 623 274 73 23 chr5 117349803 117350044 -35187215 + B4A SINE B4 6 292 0 7 1480 318 218 152 83 chr5 117350024 117350169 -35187090 - RLTR22_Mur LTR ERVK -387 1461 1307 7 1480 338 311 0 10 chr5 117350169 117350368 -35186891 + (CATATA)n Simple_repeat Simple_repeat 1 196 0 7 1480 465 19 0 0 chr5 117350567 117350621 -35186638 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1480 531 250 108 50 chr5 117350625 117350764 -35186495 - B3A SINE B2 -47 151 3 7 1480 1436 140 14 9 chr5 117351330 117351553 -35185706 + URR1B DNA MER1_type 2 225 0 7 1480 2622 145 108 12 chr5 117351968 117352450 -35184809 + RLTR11A LTR ERVK 1 528 0 7 1480 1180 199 79 139 chr5 117352733 117353136 -35184123 + MTE2a LTR MaLR 1 379 0 7 1480 522 0 0 0 chr5 117353565 117353623 -35183636 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 7 1480 243 278 96 37 chr5 117353666 117353755 -35183504 + L1MA8 LINE L1 6071 6175 -116 7 1480 490 316 22 0 chr5 117353755 117353894 -35183365 + B1F1 SINE Alu 1 142 -7 7 1480 243 278 96 37 chr5 117353894 117353991 -35183268 + L1MA8 LINE L1 6176 6268 -23 7 1480 1469 126 24 11 chr5 117355037 117355338 -35181921 - MTC LTR MaLR -2 419 1 7 1480 934 253 18 22 chr5 117355477 117355699 -35181560 + B4 SINE B4 2 222 -70 7 1480 429 198 0 0 chr5 117356591 117356682 -35180577 + (TG)n Simple_repeat Simple_repeat 1 91 0 7 1480 283 239 44 22 chr5 117356682 117356772 -35180487 + (CATG)n Simple_repeat Simple_repeat 1 92 0 7 1480 3276 48 8 0 chr5 117356778 117357171 -35180088 + MTA_Mm LTR MaLR 1 396 0 7 1480 7392 75 45 72 chr5 117357171 117358298 -35178961 + MTA_Mm-int LTR MaLR 1 1097 -1 7 1480 3385 26 8 0 chr5 117358299 117358689 -35178570 + MTA_Mm LTR MaLR 1 393 -3 7 1480 578 185 0 8 chr5 117358704 117358835 -35178424 + (TG)n Simple_repeat Simple_repeat 2 131 0 7 1480 184 351 10 31 chr5 117359445 117359542 -35177717 + MIR SINE MIR 52 146 -62 7 1480 683 296 82 25 chr5 117359974 117360255 -35177004 + RMER15 LTR ERVL 279 575 0 7 1480 186 278 175 0 chr5 117360259 117360356 -35176903 + MIRc SINE MIR 67 180 -88 7 1480 189 0 0 0 chr5 117360556 117360577 -35176682 + (CCA)n Simple_repeat Simple_repeat 1 21 0 7 1480 226 398 9 0 chr5 117360593 117360701 -35176558 - MLT1G1 LTR MaLR -37 542 434 7 1480 335 264 174 12 chr5 117360739 117360900 -35176359 - MLT1G1 LTR MaLR -224 355 169 7 1480 1570 174 39 60 chr5 117361012 117361398 -35175861 - RMER17C LTR ERVK -32 378 1 7 1480 1234 104 10 68 chr5 117361606 117361812 -35175447 + B2_Mm2 SINE B2 1 194 -1 7 1480 286 308 11 32 chr5 117362329 117362423 -35174836 - MIRc SINE MIR -120 148 57 7 1480 360 287 11 0 chr5 117363272 117363366 -35173893 - RSINE1 SINE B4 -37 128 34 7 1480 2474 72 19 0 chr5 117363385 117363706 -35173553 + ORR1A2 LTR MaLR 1 327 0 7 1480 504 59 0 0 chr5 117363716 117363784 -35173475 + (CA)n Simple_repeat Simple_repeat 2 69 0 7 1480 225 94 0 0 chr5 117364213 117364245 -35173014 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1480 225 0 0 0 chr5 117364245 117364269 -35172990 + (GA)n Simple_repeat Simple_repeat 1 25 0 8 1480 255 239 0 0 chr5 117364272 117364360 -35172899 + (TG)n Simple_repeat Simple_repeat 2 89 0 8 1480 277 289 26 0 chr5 117365239 117365315 -35171944 - B3A SINE B2 -119 79 2 8 1480 232 213 0 0 chr5 117365831 117365878 -35171381 - Lx8 LINE L1 -4 7469 7423 8 1480 378 0 0 0 chr5 117365880 117365922 -35171337 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1480 1861 185 66 38 chr5 117366907 117367273 -35169986 - ORR1C1 LTR MaLR 0 378 3 8 1480 606 186 0 0 chr5 117367521 117367618 -35169641 - B1_Mus2 SINE Alu -46 101 5 8 1480 678 241 38 16 chr5 117368100 117368286 -35168973 - B3A SINE B2 -5 193 4 8 1480 441 95 0 0 chr5 117368681 117368744 -35168515 + (TATG)n Simple_repeat Simple_repeat 1 63 0 8 1480 290 255 141 10 chr5 117368925 117369024 -35168235 + PB1D10 SINE Alu 5 116 -1 8 1480 1089 86 0 0 chr5 117369049 117369189 -35168070 - B1_Mus1 SINE Alu 0 148 9 8 1480 369 178 189 0 chr5 117369833 117369923 -35167336 + PB1D7 SINE Alu 6 112 -8 8 1480 277 215 0 52 chr5 117370048 117370117 -35167142 + MIRc SINE MIR 54 122 -146 8 1480 1319 184 29 40 chr5 117370126 117370403 -35166856 + RLTR46 LTR ERVK 42 315 -5 8 1480 244 324 0 26 chr5 117370565 117370679 -35166580 - L1MA4 LINE L1 -5 6295 6185 8 1480 715 172 24 32 chr5 117370707 117370833 -35166426 + RSINE1 SINE B4 7 131 -34 8 1480 255 31 0 0 chr5 117370849 117370881 -35166378 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1480 314 245 20 20 chr5 117370883 117370983 -35166276 - L1MA4 LINE L1 -205 6095 5996 8 1480 271 276 19 28 chr5 117371170 117371278 -35165981 - L1_Mus3 LINE L1 -733 5905 5799 8 1480 245 268 76 59 chr5 117372866 117372985 -35164274 - LTR16C LTR ERVL -356 133 13 8 1480 187 309 61 70 chr5 117373371 117373486 -35163773 + L2b LINE L2 3093 3206 -169 8 1480 2989 110 24 38 chr5 117373509 117374010 -35163249 - RLTR28 LTR ERVL -30 494 1 8 1480 260 250 75 0 chr5 117374867 117374947 -35162312 + L2b LINE L2 3241 3326 -49 8 1480 405 0 0 0 chr5 117375009 117375054 -35162205 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1480 741 262 0 0 chr5 117375054 117375199 -35162060 - B3A SINE B2 -51 147 3 8 1480 344 359 68 74 chr5 117375311 117375636 -35161623 + L1ME3A LINE L1 5541 5863 -310 8 1480 237 350 125 0 chr5 117375708 117375788 -35161471 + MER47A DNA MER2_type 3 92 -274 8 1480 564 29 0 0 chr5 117375799 117375869 -35161390 + (TC)n Simple_repeat Simple_repeat 1 70 0 8 1480 553 248 14 28 chr5 117376029 117376170 -35161089 - RSINE1 SINE B4 -26 139 1 8 1480 2796 246 114 99 chr5 117376488 117377790 -35159469 - RMER12 LTR ERVK 0 1322 1 8 1480 240 319 63 11 chr5 117378166 117378261 -35158998 + L2a LINE L2 3288 3387 -39 8 1480 547 322 57 35 chr5 117378303 117378670 -35158589 + L1_Mur3 LINE L1 5083 5457 -423 8 1480 392 242 35 10 chr5 117378673 117378787 -35158472 + L1MA4A LINE L1 5821 5929 -374 8 1480 300 230 21 75 chr5 117378962 117379056 -35158203 - MTE2a LTR MaLR -7 372 284 8 1480 781 236 6 42 chr5 117379064 117379232 -35158027 - RLTR20D LTR ERVK 0 568 407 8 1480 362 268 88 18 chr5 117379221 117379335 -35157924 - RLTR20D LTR ERVK -285 283 162 8 1480 540 268 106 39 chr5 117380024 117380280 -35156979 + B4 SINE B4 3 275 -17 8 1480 218 200 0 20 chr5 117380297 117380348 -35156911 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1480 271 217 0 36 chr5 117381144 117381241 -35156018 + (CA)n Simple_repeat Simple_repeat 1 93 0 8 1480 288 77 0 0 chr5 117381241 117381280 -35155979 + (TA)n Simple_repeat Simple_repeat 1 39 0 8 1480 271 217 0 36 chr5 117381280 117381292 -35155967 + (CA)n Simple_repeat Simple_repeat 2 13 0 8 1480 257 325 8 31 chr5 117381303 117381430 -35155829 + (CATATA)n Simple_repeat Simple_repeat 3 126 0 8 1480 194 207 0 17 chr5 117381447 117381506 -35155753 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1480 1008 219 26 9 chr5 117381688 117381914 -35155345 - B4A SINE B4 -61 231 2 8 1480 949 343 57 34 chr5 117381933 117382409 -35154850 - Kanga1a DNA Tc2 -210 544 58 8 1480 437 124 20 20 chr5 117382640 117382739 -35154520 + (CA)n Simple_repeat Simple_repeat 2 100 0 8 1480 353 245 10 0 chr5 117382851 117382953 -35154306 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 8 1480 182 62 31 0 chr5 117383008 117383040 -35154219 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1480 344 238 9 0 chr5 117383043 117383148 -35154111 + (TATG)n Simple_repeat Simple_repeat 2 107 0 8 1480 295 218 69 0 chr5 117383148 117383235 -35154024 + L1_Mur3 LINE L1 5358 5450 -430 8 1480 570 227 32 23 chr5 117383239 117383385 -35153874 + B3A SINE B2 51 202 -14 8 1480 315 0 0 0 chr5 117383386 117383421 -35153838 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 8 1480 1239 48 0 0 chr5 117383439 117383586 -35153673 + B1_Mus2 SINE Alu 1 147 0 8 1480 671 240 5 11 chr5 117383597 117383782 -35153477 + L1M3 LINE L1 5473 5656 -533 8 1480 270 266 11 11 chr5 117383781 117383888 -35153371 + L1_Rod LINE L1 5712 5886 -414 8 1480 211 161 18 18 chr5 117384077 117384134 -35153125 + CT-rich Low_complexity Low_complexity 1 57 0 8 1480 513 0 0 0 chr5 117384139 117384196 -35153063 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1480 492 91 22 11 chr5 117384419 117384508 -35152751 + (TCC)n Simple_repeat Simple_repeat 3 92 0 8 1480 1938 132 8 112 chr5 117385158 117385525 -35151734 - ORR1A4 LTR MaLR 0 329 1 8 1480 457 330 162 4 chr5 117385545 117385773 -35151486 + Lx9 LINE L1 7105 7368 -276 8 1480 449 342 66 31 chr5 117386509 117386735 -35150524 - MIRb SINE MIR 0 268 35 8 1480 697 271 6 38 chr5 117387142 117387299 -35149960 - RSINE1 SINE B4 -4 161 10 8 1480 404 214 14 0 chr5 117387308 117387378 -35149881 + ID_B1 SINE B4 140 210 -14 8 1480 678 58 0 0 chr5 117387379 117387466 -35149793 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 8 1480 340 216 47 8 chr5 117387526 117387624 -35149635 - MLT1J LTR MaLR -261 183 79 8 1480 889 275 59 45 chr5 117388568 117389036 -35148223 - L1MA4 LINE L1 -281 6019 5554 8 1480 525 306 7 7 chr5 117389434 117389569 -35147690 + RSINE1 SINE B4 1 135 -30 8 1480 302 344 43 38 chr5 117389604 117389807 -35147452 + MIRb SINE MIR 35 238 -30 8 1480 379 114 0 136 chr5 117389896 117389956 -35147303 + ORR1B1 LTR MaLR 43 91 -303 8 1480 3203 195 36 28 chr5 117389956 117390595 -35146664 - RMER13B LTR ERVK -1 907 264 8 1480 1086 112 101 0 chr5 117390590 117390768 -35146491 + ORR1B1 LTR MaLR 199 394 0 8 1480 426 250 98 0 chr5 117390859 117390991 -35146268 + B1F1 SINE Alu 3 147 -2 8 1480 276 30 0 0 chr5 117391134 117391167 -35146092 + (A)n Simple_repeat Simple_repeat 1 33 0 8 1480 425 308 136 27 chr5 117391474 117391731 -35145528 - Tigger13a DNA MER2_type -262 509 225 8 1480 391 241 83 9 chr5 117391755 117391864 -35145395 + L2a LINE L2 3081 3197 -229 8 1480 2225 69 41 29 chr5 117392244 117392559 -35144700 + ORR1A2 LTR MaLR 1 319 -8 8 1480 265 307 139 0 chr5 117392570 117392671 -35144588 - L1MEg LINE L1 -4958 1126 1012 8 1480 371 270 249 68 chr5 117392716 117393019 -35144240 - L1MEg LINE L1 -5138 946 589 8 1480 594 51 0 0 chr5 117393048 117393126 -35144133 + (TCTTG)n Simple_repeat Simple_repeat 5 82 0 8 1480 442 302 75 23 chr5 117393169 117393342 -35143917 + B3A SINE B2 1 182 -16 8 1480 201 129 0 0 chr5 117393372 117393403 -35143856 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1480 447 52 0 0 chr5 117393813 117393871 -35143388 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1480 234 0 0 0 chr5 117393958 117393984 -35143275 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1480 459 0 0 0 chr5 117393984 117394034 -35143225 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1480 719 232 131 76 chr5 117394258 117394283 -35142976 + B4A SINE B4 1 25 -267 8 1480 1936 110 33 51 chr5 117394283 117394618 -35142641 + ORR1A4 LTR MaLR 1 329 0 8 1480 719 232 131 76 chr5 117394618 117394867 -35142392 + B4A SINE B4 26 290 -2 8 1480 282 73 0 0 chr5 117394896 117394937 -35142322 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1480 195 129 0 0 chr5 117395422 117395453 -35141806 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1480 672 237 14 126 chr5 117395464 117395686 -35141573 - B3A SINE B2 0 198 2 8 1480 671 95 40 13 chr5 117396200 117396350 -35140909 + (TTCA)n Simple_repeat Simple_repeat 1 154 0 8 1480 205 231 248 44 chr5 117396351 117396464 -35140795 - L2b LINE L2 -2 3373 3238 8 1480 240 215 11 112 chr5 117396655 117396713 -35140546 - MTEa LTR MaLR -18 361 313 8 1480 384 240 0 0 chr5 117396713 117396788 -35140471 + B4 SINE B4 1 75 -217 8 1480 702 157 17 0 chr5 117396795 117397103 -35140156 + (CATA)n Simple_repeat Simple_repeat 1 313 0 8 1480 365 256 171 19 chr5 117397147 117397219 -35140040 + B4 SINE B4 119 224 -68 8 1480 198 0 0 0 chr5 117397219 117397241 -35140018 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 8 1480 365 243 118 27 chr5 117397241 117397306 -35139953 + B4 SINE B4 224 290 -2 8 1480 262 319 14 138 chr5 117397478 117397616 -35139643 - MTEa LTR MaLR -258 121 1 8 1480 464 246 203 16 chr5 117397904 117398086 -35139173 - MER5C1 DNA MER1_type -47 216 1 8 1480 618 264 33 0 chr5 117398137 117398258 -35139001 + RSINE1 SINE B4 2 126 -39 8 1480 238 159 0 45 chr5 117398743 117398809 -35138450 + GA-rich Low_complexity Low_complexity 4 66 0 8 1480 280 248 58 7 chr5 117398845 117398999 -35138260 + (TAGA)n Simple_repeat Simple_repeat 3 164 0 8 1480 836 97 22 28 chr5 117399047 117399227 -35138032 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 8 1480 353 289 22 0 chr5 117399442 117399532 -35137727 + CT-rich Low_complexity Low_complexity 2 93 0 8 1480 194 156 22 0 chr5 117400381 117400426 -35136833 + G-rich Low_complexity Low_complexity 3 48 0 8 1480 353 184 36 7 chr5 117400449 117400586 -35136673 + (CTGGGG)n Simple_repeat Simple_repeat 1 141 0 8 1480 364 215 27 75 chr5 117400597 117400783 -35136476 + (CTGGGG)n Simple_repeat Simple_repeat 1 177 0 8 1480 408 241 3 83 chr5 117400865 117401097 -35136162 + G-rich Low_complexity Low_complexity 1 213 0 8 1480 381 319 6 12 chr5 117401420 117401588 -35135671 + (TATG)n Simple_repeat Simple_repeat 4 170 0 8 1480 239 297 0 0 chr5 117401537 117401628 -35135631 + (TCTG)n Simple_repeat Simple_repeat 4 94 0 8 1480 519 242 0 0 chr5 117401641 117401819 -35135440 + (TA)n Simple_repeat Simple_repeat 1 178 0 9 1480 234 229 194 0 chr5 117401899 117402043 -35135216 + RLTR21 LTR ERVK 1081 1252 -320 9 1480 375 318 22 15 chr5 117402544 117402678 -35134581 + MIR SINE MIR 116 250 -12 9 1480 375 318 22 15 chr5 117402913 117403047 -35134212 + MIR SINE MIR 116 250 -12 9 1480 1305 75 23 6 chr5 117403334 117403507 -35133752 + B2_Mm2 SINE B2 2 177 -18 9 1480 213 121 0 0 chr5 117403512 117403545 -35133714 + (GGA)n Simple_repeat Simple_repeat 1 33 0 9 1480 513 0 0 0 chr5 117403596 117403653 -35133606 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1480 231 348 11 33 chr5 117403793 117403885 -35133374 - MIRb SINE MIR -4 264 175 9 1480 786 201 73 11 chr5 117403886 117404077 -35133182 + B4A SINE B4 4 206 -86 9 1480 396 0 0 0 chr5 117404133 117404177 -35133082 + (CATA)n Simple_repeat Simple_repeat 2 45 0 9 1480 217 268 18 0 chr5 117404197 117404253 -35133006 - MIR SINE MIR -97 165 109 9 1480 1244 41 7 0 chr5 117405588 117405734 -35131525 - B1_Mus2 SINE Alu 0 147 1 9 1480 25 0 0 0 chr5 117405823 117405848 -35131411 + AT_rich Low_complexity Low_complexity 1 25 0 9 1480 1646 42 0 0 chr5 117405891 117406082 -35131177 + B2_Mm1t SINE B2 1 191 -2 9 1480 438 358 76 18 chr5 117406129 117406524 -35130735 + L1ME2 LINE L1 5712 6129 -35 9 1480 613 262 123 0 chr5 117407330 117407517 -35129742 + ID_B1 SINE B4 3 212 -12 9 1480 313 310 0 0 chr5 117407710 117407797 -35129462 - B1F SINE Alu -61 88 2 9 1480 288 362 0 8 chr5 117407850 117407967 -35129292 - Kanga1 DNA Tc2 -273 1472 1357 9 1480 225 389 28 0 chr5 117407995 117408103 -35129156 - Kanga1 DNA Tc2 -1627 118 8 9 1480 249 131 49 0 chr5 117409144 117409205 -35128054 + GA-rich Low_complexity Low_complexity 6 69 0 9 1480 932 126 6 17 chr5 117409355 117409532 -35127727 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 9 1480 617 69 0 11 chr5 117409534 117409622 -35127637 + (GAAAA)n Simple_repeat Simple_repeat 5 91 0 9 1480 406 204 42 21 chr5 117409641 117409736 -35127523 - MTE2b LTR MaLR -43 336 240 9 1480 709 236 6 30 chr5 117409732 117409898 -35127361 + B3A SINE B2 21 182 -16 9 1480 296 340 65 37 chr5 117410063 117410277 -35126982 - LTR16A LTR ERVL -211 240 21 9 1480 252 324 0 0 chr5 117410553 117410627 -35126632 - MIRb SINE MIR -35 233 160 9 1480 304 239 182 9 chr5 117410755 117410865 -35126394 + MT2A LTR ERVL 2 130 -403 9 1480 522 235 73 40 chr5 117410769 117411054 -35126205 + MTE2b LTR MaLR 20 379 0 9 1480 556 288 68 6 chr5 117411290 117411451 -35125808 - MamRep605 Unknown Unknown -641 235 65 9 1480 780 243 64 37 chr5 117411464 117411682 -35125577 - ID_B1 SINE B4 0 224 1 9 1480 279 0 0 0 chr5 117411690 117411721 -35125538 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 9 1480 706 250 0 41 chr5 117411721 117411858 -35125401 - ID_B1 SINE B4 -7 217 84 9 1480 1699 174 251 17 chr5 117412042 117412504 -35124755 + RMER15 LTR ERVL 6 575 0 9 1480 193 146 42 0 chr5 117413125 117413173 -35124086 + GA-rich Low_complexity Low_complexity 3 52 0 9 1480 397 96 0 88 chr5 117415033 117415124 -35122135 + (TG)n Simple_repeat Simple_repeat 1 83 0 9 1480 444 217 80 40 chr5 117415127 117415252 -35122007 - RMER15 LTR ERVL 0 575 446 9 1480 1072 260 177 40 chr5 117415347 117415828 -35121431 - RMER15 LTR ERVL -2 573 27 9 1480 436 278 84 21 chr5 117416568 117416759 -35120500 + B3 SINE B2 1 203 -13 9 1480 391 193 71 24 chr5 117416965 117417050 -35120209 + B4A SINE B4 202 290 -2 9 1480 228 86 0 0 chr5 117417071 117417106 -35120153 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1480 27 29 0 0 chr5 117417106 117417140 -35120119 + AT_rich Low_complexity Low_complexity 1 34 0 9 1480 454 275 5 112 chr5 117417797 117418007 -35119252 + B4 SINE B4 14 199 -93 9 1480 429 230 94 87 chr5 117418007 117418145 -35119114 + B3A SINE B2 4 142 -56 9 1480 3510 86 17 4 chr5 117418921 117419390 -35117869 - MT2C_Mm LTR ERVL 0 475 1 9 1480 1848 142 119 8 chr5 117419694 117419872 -35117387 + RMER17C LTR ERVK 1 212 -198 9 1480 459 52 0 0 chr5 117419872 117419930 -35117329 + (TC)n Simple_repeat Simple_repeat 2 59 0 9 1480 1848 142 119 8 chr5 117419930 117420120 -35117139 + RMER17C LTR ERVK 213 409 -1 9 1480 1386 165 183 0 chr5 117420133 117420406 -35116853 + ORR1C2 LTR MaLR 62 384 0 9 1480 463 229 0 0 chr5 117421261 117421344 -35115915 + RSINE1 SINE B4 20 102 -63 9 1480 200 196 0 38 chr5 117421379 117421432 -35115827 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 9 1480 219 289 0 0 chr5 117421715 117421767 -35115492 + MIRb SINE MIR 209 260 -8 9 1480 1058 96 0 6 chr5 117421941 117422099 -35115160 + (TTTC)n Simple_repeat Simple_repeat 4 160 0 9 1480 646 321 52 82 chr5 117422117 117422309 -35114950 + MLT1A1 LTR MaLR 4 179 -229 9 1480 342 0 0 0 chr5 117422309 117422347 -35114912 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 9 1480 646 321 52 82 chr5 117422347 117422554 -35114705 + MLT1A1 LTR MaLR 180 391 -17 9 1480 912 257 41 144 chr5 117422623 117423186 -35114073 + RLTR16 LTR ERVK 1 505 0 9 1480 337 169 151 8 chr5 117423577 117423679 -35113580 - L1M2 LINE L1 -473 5818 5697 9 1480 327 255 56 47 chr5 117423688 117423795 -35113464 + PB1 SINE Alu 13 120 -7 9 1480 972 237 132 47 chr5 117424094 117424413 -35112846 + MTEb LTR MaLR 1 341 -38 9 1480 315 0 0 0 chr5 117424413 117424448 -35112811 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 9 1480 972 237 132 47 chr5 117424448 117424469 -35112790 + MTEb LTR MaLR 342 369 -10 9 1480 1153 319 91 11 chr5 117424505 117424951 -35112308 + ORR1E-int LTR MaLR 99 548 -822 9 1480 530 308 44 64 chr5 117424996 117425246 -35112013 - RMER15 LTR ERVL -2 573 329 9 1480 444 238 96 20 chr5 117425234 117425380 -35111879 - RMER15 LTR ERVL -402 173 17 9 1480 552 293 139 75 chr5 117425385 117425524 -35111735 + L1MEg LINE L1 1608 1757 -4485 9 1480 1148 56 7 0 chr5 117425524 117425667 -35111592 + B1_Mm SINE Alu 2 145 -2 9 1480 552 293 139 75 chr5 117425667 117425869 -35111390 + L1MEg LINE L1 1758 1971 -4271 9 1480 1752 159 79 20 chr5 117425869 117426184 -35111075 - ORR1D1 LTR MaLR 0 374 51 9 1480 369 0 0 0 chr5 117426184 117426225 -35111034 + (CATA)n Simple_repeat Simple_repeat 4 44 0 9 1480 1752 159 79 20 chr5 117426225 117426262 -35110997 - ORR1D1 LTR MaLR -324 50 1 9 1480 552 293 139 75 chr5 117426262 117426292 -35110967 + L1MEg LINE L1 1972 2003 -4239 9 1480 1169 41 7 20 chr5 117426324 117426472 -35110787 + B1_Mus1 SINE Alu 1 146 -2 9 1480 207 0 0 0 chr5 117426472 117426495 -35110764 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1480 410 287 106 48 chr5 117426518 117426939 -35110320 + L1MEg LINE L1 2072 2528 -3618 9 1480 256 301 49 0 chr5 117427063 117427186 -35110073 + L1MEg LINE L1 754 882 -5202 9 1480 651 60 0 0 chr5 117427312 117427396 -35109863 + (TA)n Simple_repeat Simple_repeat 2 85 0 9 1480 23 0 0 0 chr5 117427436 117427459 -35109800 + AT_rich Low_complexity Low_complexity 1 23 0 9 1480 817 290 133 86 chr5 117427488 117428315 -35108944 + L1MEg LINE L1 2917 3782 -2364 9 1480 898 211 10 61 chr5 117428404 117428555 -35108704 + ORR1E LTR MaLR 3 151 -208 9 1480 2304 85 31 6 chr5 117428555 117428874 -35108385 + ORR1A2 LTR MaLR 1 327 0 9 1480 898 211 10 61 chr5 117428874 117428919 -35108340 + ORR1E LTR MaLR 152 189 -170 9 1480 213 96 18 71 chr5 117428928 117428984 -35108275 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 9 1480 327 263 113 101 chr5 117429003 117429204 -35108055 + ORR1E LTR MaLR 171 366 -13 9 1480 440 222 162 7 chr5 117429208 117429344 -35107915 + B4A SINE B4 122 278 -14 9 1480 350 311 46 51 chr5 117429353 117429590 -35107669 + L1M5 LINE L1 4558 4793 -1353 9 1480 258 281 0 0 chr5 117429795 117429909 -35107350 + (GTGTG)n Simple_repeat Simple_repeat 4 117 0 9 1480 286 300 39 20 chr5 117429969 117430071 -35107188 + PB1D10 SINE Alu 6 109 -8 9 1480 2713 136 17 15 chr5 117430580 117430992 -35106267 + MTC LTR MaLR 1 413 -8 9 1480 658 179 51 8 chr5 117431138 117431256 -35106003 + MTC LTR MaLR 291 413 -8 9 1480 2436 207 12 122 chr5 117431476 117432163 -35105096 + RMER19C LTR ERVK 1 611 0 9 1480 440 331 39 33 chr5 117432488 117432641 -35104618 + B4 SINE B4 52 205 -87 9 1480 1330 207 83 12 chr5 117432698 117433025 -35104234 + ORR1D1 LTR MaLR 25 374 0 9 1480 774 74 49 6 chr5 117433423 117433586 -35103673 + (TC)n Simple_repeat Simple_repeat 1 170 0 9 1480 421 129 43 14 chr5 117433591 117433732 -35103527 + CT-rich Low_complexity Low_complexity 2 146 0 9 1480 241 325 0 24 chr5 117433810 117433892 -35103367 + MER103 DNA DNA 6 85 -81 9 1480 531 253 61 61 chr5 117435029 117435193 -35102066 + RSINE1 SINE B4 2 165 0 9 1480 308 299 75 79 chr5 117435180 117435420 -35101839 - RMER12 LTR ERVK -334 988 750 9 1480 387 0 0 0 chr5 117435558 117435601 -35101658 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1480 220 301 41 0 chr5 117435604 117435677 -35101582 + MIRb SINE MIR 118 193 -75 9 1480 254 163 0 0 chr5 117435678 117435721 -35101538 + MER5B DNA MER1_type 2 44 -134 9 1480 370 235 48 19 chr5 117436353 117436457 -35100802 - PB1D10 SINE Alu -8 109 3 9 1480 643 71 0 0 chr5 117436721 117436805 -35100454 - ORR1A2 LTR MaLR -147 180 97 9 1480 321 135 0 0 chr5 117436823 117436875 -35100384 + (T)n Simple_repeat Simple_repeat 1 52 0 9 1480 684 200 32 0 chr5 117436930 117437055 -35100204 - RSINE1 SINE B4 -11 154 26 9 1480 318 245 97 10 chr5 117437290 117437393 -35099866 + MER20 DNA MER1_type 101 212 -7 9 1480 3039 23 0 6 chr5 117437415 117437763 -35099496 - ORR1A0 LTR MaLR 0 346 1 9 1480 11532 52 125 0 chr5 117437763 117439356 -35097903 - ORR1A0-int LTR MaLR 0 1792 1 9 1480 3123 17 0 3 chr5 117439356 117439703 -35097556 - ORR1A0 LTR MaLR 0 346 1 9 1480 268 205 154 0 chr5 117440152 117440230 -35097029 + MER112 DNA MER1_type 97 186 -75 9 1480 588 134 0 0 chr5 117440251 117440348 -35096911 + (TG)n Simple_repeat Simple_repeat 1 97 0 9 2 372 227 59 40 chr5 117440426 117440527 -35096732 + MER5A1 DNA MER1_type 14 116 -50 9 1481 465 76 0 0 chr5 117440539 117440605 -35096654 + (CTTG)n Simple_repeat Simple_repeat 2 67 0 9 1481 242 242 106 0 chr5 117440606 117440672 -35096587 - ID SINE ID -148 76 4 9 1481 330 253 12 12 chr5 117440916 117440996 -35096263 + PB1D10 SINE Alu 23 102 -15 9 1481 672 229 136 5 chr5 117441030 117441228 -35096031 + ID_B1 SINE B4 1 224 0 9 1481 676 283 136 23 chr5 117442416 117442680 -35094579 - MTE2a LTR MaLR -4 375 82 9 1481 780 218 86 0 chr5 117442681 117442855 -35094404 - MTE2b LTR MaLR -190 189 1 1 1481 719 300 51 88 chr5 117443359 117443655 -35093604 + B4A SINE B4 7 291 -1 1 1481 309 279 215 17 chr5 117444412 117444654 -35092605 - MLT1H-int LTR MaLR -863 546 258 1 1481 228 341 12 12 chr5 117445010 117445096 -35092163 + L2a LINE L2 3316 3401 -25 1 1481 1464 212 103 14 chr5 117445164 117445513 -35091746 - MTD LTR MaLR -16 403 24 1 1481 622 269 11 23 chr5 117445506 117445681 -35091578 - MTD LTR MaLR -242 177 5 1 1481 849 286 30 37 chr5 117445750 117445816 -35091443 - B4A SINE B4 -24 268 199 1 1481 3118 81 10 2 chr5 117445816 117446213 -35091046 - MTB LTR MaLR 0 400 1 1 1481 849 286 30 37 chr5 117446213 117446415 -35090844 - B4A SINE B4 -94 198 2 1 1481 2883 49 6 0 chr5 117446622 117446966 -35090293 - ORR1A1 LTR MaLR 0 346 1 1 1481 788 341 131 21 chr5 117447015 117447497 -35089762 + MLT1K LTR MaLR 43 577 -18 1 1481 999 225 29 5 chr5 117447554 117447764 -35089495 + MTE2b LTR MaLR 1 215 -164 1 1481 335 189 0 32 chr5 117447767 117447860 -35089399 + C-rich Low_complexity Low_complexity 2 91 0 1 1481 621 267 16 54 chr5 117447881 117447988 -35089271 + MTE2b LTR MaLR 201 304 -75 1 1481 1307 102 43 0 chr5 117447988 117448174 -35089085 + B2_Mm2 SINE B2 1 194 -1 1 1481 621 267 16 54 chr5 117448174 117448252 -35089007 + MTE2b LTR MaLR 305 379 0 1 1481 678 130 0 0 chr5 117449359 117449467 -35087792 + (GGGA)n Simple_repeat Simple_repeat 1 108 0 1 1481 781 239 6 12 chr5 117449497 117449662 -35087597 - ID_B1 SINE B4 -25 199 36 1 1481 360 318 31 43 chr5 117449803 117449964 -35087295 + MLT1K LTR MaLR 160 318 -277 1 1481 217 312 41 41 chr5 117450128 117450225 -35087034 - MIRb SINE MIR -83 185 89 1 1481 270 359 86 3 chr5 117450503 117450647 -35086612 + MIRb SINE MIR 28 188 -80 1 1481 477 0 0 0 chr5 117451401 117451454 -35085805 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 1 1481 400 200 38 13 chr5 117451542 117451699 -35085560 + (TA)n Simple_repeat Simple_repeat 1 161 0 1 1481 720 255 0 7 chr5 117451796 117451938 -35085321 - B1F SINE Alu -8 141 1 1 1481 477 319 55 64 chr5 117451938 117452014 -35085245 - ID_B1 SINE B4 -8 216 1 1 1481 300 225 28 14 chr5 117451954 117452026 -35085233 + BC1_Mm scRNA scRNA 14 86 -66 1 1481 237 309 16 15 chr5 117452296 117452378 -35084881 - L2a LINE L2 -20 3406 3269 1 1481 573 339 66 4 chr5 117452956 117453214 -35084045 + B4 SINE B4 1 274 -18 1 1481 416 67 17 0 chr5 117453235 117453295 -35083964 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1481 723 176 16 20 chr5 117453365 117453622 -35083637 + (TATG)n Simple_repeat Simple_repeat 1 255 0 1 1481 701 253 12 12 chr5 117453624 117453788 -35083471 - RSINE1 SINE B4 0 165 2 1 1481 270 310 17 34 chr5 117454875 117454992 -35082267 + ORR1A4 LTR MaLR 25 139 -190 1 1481 1489 241 91 57 chr5 117455424 117456141 -35081118 - RMER20A LTR ERVK -190 670 1 1 1481 641 267 49 6 chr5 117456143 117456305 -35080954 + B4 SINE B4 119 287 -5 1 1481 285 219 170 9 chr5 117456402 117456508 -35080751 - MIRb SINE MIR -50 218 96 1 1481 4284 44 0 10 chr5 117456610 117457118 -35080141 + RLTR1C LTR ERV1 1 503 0 1 1481 183 80 0 0 chr5 117457124 117457149 -35080110 + (CCCCG)n Simple_repeat Simple_repeat 5 29 0 1 1481 431 240 182 57 chr5 117457577 117457736 -35079523 + B3A SINE B2 2 180 -18 1 1481 30 27 0 0 chr5 117457747 117457784 -35079475 + AT_rich Low_complexity Low_complexity 1 37 0 1 1481 2637 24 204 0 chr5 117458259 117458588 -35078671 + MTA_Mm LTR MaLR 1 396 0 1 1481 9638 22 2 1 chr5 117458588 117459685 -35077574 + MTA_Mm-int LTR MaLR 1 1098 0 1 1481 3450 35 2 0 chr5 117459685 117460080 -35077179 + MTA_Mm LTR MaLR 1 396 0 1 1481 994 254 88 44 chr5 117460299 117460686 -35076573 - Lx8 LINE L1 -9 7464 7061 1 1481 827 276 88 20 chr5 117460702 117461084 -35076175 - Lx8 LINE L1 -467 7006 6527 1 1481 612 0 0 0 chr5 117461084 117461152 -35076107 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1481 327 273 84 30 chr5 117461152 117461245 -35076014 - Lx8 LINE L1 -947 6526 6425 1 1481 453 271 94 34 chr5 117461642 117461791 -35075468 + RSINE1 SINE B4 8 165 0 1 1481 515 107 12 0 chr5 117462004 117462088 -35075171 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1481 407 277 283 9 chr5 117462131 117462357 -35074902 - B4A SINE B4 -4 288 1 1 1481 438 143 0 0 chr5 117462423 117462500 -35074759 + (TTGG)n Simple_repeat Simple_repeat 3 79 0 1 1481 180 0 0 0 chr5 117462657 117462677 -35074582 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1 1481 231 257 143 38 chr5 117463027 117463237 -35074022 + RLTR21 LTR ERVK 1075 1306 -266 1 1481 519 212 23 17 chr5 117463285 117463458 -35073801 + (TATG)n Simple_repeat Simple_repeat 1 174 0 1 1481 315 0 0 0 chr5 117463458 117463493 -35073766 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1481 998 251 17 21 chr5 117463516 117463752 -35073507 - B4A SINE B4 -57 235 1 1 1481 277 253 56 78 chr5 117463756 117463846 -35073413 + LTR16E1 LTR ERVL 440 527 -11 1 1481 555 88 0 0 chr5 117463954 117464045 -35073214 + (TC)n Simple_repeat Simple_repeat 2 92 0 1 1481 535 338 33 65 chr5 117464045 117464381 -35072878 + LTR16A LTR ERVL 98 422 -29 1 1481 209 303 30 0 chr5 117464438 117464504 -35072755 + (ATTG)n Simple_repeat Simple_repeat 2 69 0 1 1481 308 255 0 20 chr5 117465252 117465352 -35071907 + L1M5 LINE L1 5684 5781 -343 1 1481 823 286 48 48 chr5 117465401 117465628 -35071631 + B4A SINE B4 1 227 -65 1 1481 748 228 61 17 chr5 117465628 117465839 -35071420 + B3A SINE B2 1 212 -4 1 1481 227 313 107 104 chr5 117465839 117465917 -35071342 + B4A SINE B4 1 290 -2 1 1481 315 0 0 0 chr5 117465948 117465983 -35071276 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1481 300 187 0 128 chr5 117466542 117466681 -35070578 + ORR1B1 LTR MaLR 1 150 -244 1 1481 1631 153 75 8 chr5 117466681 117466997 -35070262 + ORR1A3 LTR MaLR 1 338 -8 1 1481 229 303 0 57 chr5 117467024 117467094 -35070165 - MLT1D LTR MaLR -439 66 1 1 1481 1052 163 112 10 chr5 117467418 117467623 -35069636 + URR1A DNA MER1_type 1 226 0 1 1481 369 352 41 37 chr5 117467937 117468182 -35069077 + L2c LINE L2 3061 3306 -81 1 1481 252 220 0 0 chr5 117468627 117468677 -35068582 - Lx8 LINE L1 -524 6949 6900 1 1481 1276 142 4 117 chr5 117468690 117468954 -35068305 - ORR1B1 LTR MaLR -99 295 62 1 1481 475 155 0 11 chr5 117468963 117469080 -35068179 - ORR1B1 LTR MaLR -235 111 1 1 1481 373 292 191 18 chr5 117469088 117469370 -35067889 + Lx8 LINE L1 7135 7465 -8 1 1481 633 269 12 31 chr5 117469808 117469969 -35067290 + ID_B1 SINE B4 1 158 -66 1 1481 193 147 0 29 chr5 117469984 117470019 -35067240 + L2b LINE L2 3097 3130 -245 1 1481 1049 167 125 0 chr5 117470077 117470269 -35066990 - B3 SINE B2 0 216 1 1 1481 401 254 153 14 chr5 117470508 117470652 -35066607 + RSINE1 SINE B4 2 165 0 1 1481 2329 74 11 63 chr5 117470782 117471129 -35066130 - ORR1A4 LTR MaLR 0 329 1 1 1481 420 288 20 48 chr5 117471254 117471400 -35065859 - B1F1 SINE Alu -2 147 6 1 1481 576 42 0 0 chr5 117471774 117471845 -35065414 + (TGGA)n Simple_repeat Simple_repeat 4 74 0 1 1481 218 219 0 15 chr5 117472019 117472084 -35065175 + CT-rich Low_complexity Low_complexity 1 64 0 1 1481 640 214 11 0 chr5 117472096 117472274 -35064985 + CT-rich Low_complexity Low_complexity 1 180 0 1 1481 963 161 0 0 chr5 117472289 117472469 -35064790 + CT-rich Low_complexity Low_complexity 1 180 0 1 1481 1257 282 94 12 chr5 117472523 117472864 -35064395 + MTEb LTR MaLR 11 379 0 1 1481 200 306 16 16 chr5 117474017 117474080 -35063179 + L2c LINE L2 2785 2847 -572 1 1481 532 299 26 58 chr5 117474088 117474244 -35063015 + B3A SINE B2 2 152 -46 1 1481 315 0 0 0 chr5 117474247 117474282 -35062977 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1481 268 320 252 15 chr5 117474433 117474639 -35062620 + LTR16C LTR ERVL 42 296 -193 1 1481 267 294 18 0 chr5 117475318 117475403 -35061856 + L2c LINE L2 3010 3099 -327 1 1481 252 200 0 0 chr5 117475477 117475557 -35061702 + CT-rich Low_complexity Low_complexity 1 80 0 1 1481 189 370 30 0 chr5 117475639 117475739 -35061520 + L2c LINE L2 3263 3365 -61 1 1481 191 282 41 27 chr5 117476010 117476083 -35061176 - MIR SINE MIR -176 86 13 1 1481 359 98 0 0 chr5 117476327 117476378 -35060881 - HAL1-3A_ME LINE L1 -831 2027 1977 1 1481 675 193 0 0 chr5 117476388 117476618 -35060641 + (TG)n Simple_repeat Simple_repeat 1 230 0 1 1481 300 196 18 0 chr5 117476648 117476704 -35060555 - HAL1-3A_ME LINE L1 -840 2018 1962 1 1481 828 164 0 0 chr5 117476704 117476989 -35060270 + (TG)n Simple_repeat Simple_repeat 1 285 0 1 1481 617 241 142 5 chr5 117477039 117477217 -35060042 + B3A SINE B2 15 215 -1 1 1481 617 277 110 78 chr5 117477266 117477548 -35059711 + B4 SINE B4 2 292 0 1 1481 260 317 11 37 chr5 117477610 117477732 -35059527 - MIRb SINE MIR -139 129 13 1 1481 4451 22 0 0 chr5 117477955 117478448 -35058811 + MT2_Mm LTR ERVL 1 493 0 1 1481 411 203 40 17 chr5 117478514 117478610 -35058649 + B4 SINE B4 2 94 -71 1 1481 1251 278 98 7 chr5 117478618 117479056 -35058203 + Lx8 LINE L1 6368 6845 -628 1 1481 497 282 43 0 chr5 117479124 117479241 -35058018 + B4 SINE B4 89 210 -82 1 1481 900 200 80 10 chr5 117479241 117479515 -35057744 - ORR1D1 LTR MaLR -1 369 1 1 1481 472 195 42 58 chr5 117479515 117479600 -35057659 + B4 SINE B4 208 290 -2 1 1481 741 310 71 65 chr5 117480078 117480585 -35056674 - RLTR33 LTR ERVK -27 651 142 1 1481 2816 172 63 17 chr5 117480643 117481170 -35056089 - RMER19B LTR ERVK -12 890 340 1 1481 1024 176 0 204 chr5 117481192 117481477 -35055782 - RMER19B LTR ERVK -675 227 1 1 1481 306 0 0 0 chr5 117481507 117481541 -35055718 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1481 270 0 0 0 chr5 117481794 117481824 -35055435 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1481 409 250 612 7 chr5 117482584 117482718 -35054541 + B3A SINE B2 2 216 0 1 1481 270 0 0 0 chr5 117482750 117482780 -35054479 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1 1481 1167 45 0 0 chr5 117482781 117482915 -35054344 - B1_Mus1 SINE Alu -13 135 2 1 1481 520 269 68 7 chr5 117483101 117483247 -35054012 - MTEb LTR MaLR 0 379 225 1 1481 575 158 30 12 chr5 117483256 117483385 -35053874 + (TG)n Simple_repeat Simple_repeat 2 132 0 1 1481 216 0 0 0 chr5 117483385 117483409 -35053850 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1481 575 200 34 10 chr5 117483409 117483565 -35053694 + (TG)n Simple_repeat Simple_repeat 1 159 0 1 1481 271 267 231 55 chr5 117483601 117483839 -35053420 - B4 SINE B4 -11 281 2 1 1481 481 288 175 3 chr5 117484193 117484507 -35052752 + L1MB7 LINE L1 5731 6098 -86 1 1481 410 206 82 0 chr5 117484521 117484618 -35052641 + MTD LTR MaLR 315 419 0 1 1481 313 322 84 53 chr5 117484627 117484758 -35052501 - MER115 DNA Tip100 -360 333 199 1 1481 364 302 0 11 chr5 117485203 117485290 -35051969 + PB1D10 SINE Alu 19 104 -13 1 1481 227 208 31 44 chr5 117485384 117485458 -35051801 + MIRb SINE MIR 194 262 0 1 1481 577 277 18 24 chr5 117485713 117485883 -35051376 + B4 SINE B4 1 169 -123 1 1481 762 133 35 0 chr5 117486174 117486347 -35050912 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1 1481 439 278 25 7 chr5 117486359 117486646 -35050613 + (TGGA)n Simple_repeat Simple_repeat 1 292 0 1 1481 181 247 12 12 chr5 117486652 117486734 -35050525 + (TAGG)n Simple_repeat Simple_repeat 4 85 0 1 1481 509 239 403 26 chr5 117487768 117488036 -35049223 - MTEa LTR MaLR -6 373 5 1 1481 604 199 70 7 chr5 117488170 117488312 -35048947 - L1MB4 LINE L1 -352 5828 5678 1 1481 1409 202 155 16 chr5 117488318 117488635 -35048624 - MTE2a LTR MaLR 0 379 19 1 1481 556 275 30 0 chr5 117489217 117489348 -35047911 + B3A SINE B2 23 157 -41 1 1481 786 145 0 0 chr5 117489349 117489501 -35047758 + (TG)n Simple_repeat Simple_repeat 1 152 0 1 1481 476 329 37 46 chr5 117489527 117489744 -35047515 + B4 SINE B4 73 287 -5 1 1481 414 0 0 0 chr5 117489744 117489790 -35047469 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 1 1481 248 300 115 16 chr5 117489825 117489947 -35047312 + LTR78 LTR ERV1 173 306 -998 1 1481 216 0 0 0 chr5 117490164 117490188 -35047071 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 1 1481 420 322 50 79 chr5 117490575 117490855 -35046404 - ORR1E LTR MaLR -3 356 85 1 1481 243 0 0 0 chr5 117491603 117491630 -35045629 + (TCCA)n Simple_repeat Simple_repeat 3 29 0 1 1481 371 314 16 55 chr5 117491671 117491799 -35045460 - RSINE1 SINE B4 -20 145 23 1 1481 804 237 47 73 chr5 117491824 117492124 -35045135 + B4A SINE B4 1 292 0 1 1481 294 106 0 0 chr5 117492154 117492201 -35045058 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1481 303 311 159 68 chr5 117492536 117492743 -35044516 + L1MB7 LINE L1 5561 5786 -388 1 1481 1518 127 27 27 chr5 117492781 117493041 -35044218 - MTC LTR MaLR -161 260 1 1 1481 903 67 0 0 chr5 117493072 117493191 -35044068 + (GAAAA)n Simple_repeat Simple_repeat 2 120 0 1 1481 993 130 69 23 chr5 117493192 117493341 -35043918 + B2_Mm2 SINE B2 1 161 -34 1 1481 477 0 0 0 chr5 117493341 117493394 -35043865 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 1 1481 993 130 69 23 chr5 117493394 117493417 -35043842 + B2_Mm2 SINE B2 162 181 -14 1 1481 240 289 125 12 chr5 117493424 117493592 -35043667 + L1MB7 LINE L1 5820 6006 -178 1 1481 206 267 0 48 chr5 117494084 117494147 -35043112 + GA-rich Low_complexity Low_complexity 1 60 0 1 1481 436 202 17 96 chr5 117494679 117494691 -35042568 + MT2B LTR ERVL 152 154 -447 1 1481 801 123 9 0 chr5 117494691 117494805 -35042454 + B1_Mur2 SINE Alu 1 115 -34 1 1481 507 203 7 79 chr5 117494696 117494807 -35042452 + ID_B1 SINE B4 88 191 -33 1 1481 660 87 0 0 chr5 117494807 117494899 -35042360 + (TC)n Simple_repeat Simple_repeat 1 92 0 1 1481 507 203 7 79 chr5 117494899 117494926 -35042333 + ID_B1 SINE B4 192 216 -8 1 1481 506 286 17 55 chr5 117495891 117496072 -35041187 - B4A SINE B4 -117 175 2 1 1481 326 226 0 46 chr5 117496774 117496839 -35040420 + L1MEg LINE L1 1882 1943 -4141 1 1481 615 236 165 25 chr5 117496847 117496881 -35040378 + B4 SINE B4 2 35 -257 1 1481 504 86 0 0 chr5 117496881 117496951 -35040308 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1481 615 236 165 25 chr5 117496951 117497116 -35040143 + B4 SINE B4 36 229 -63 1 1481 192 77 0 0 chr5 117497147 117497173 -35040086 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1481 1111 59 0 0 chr5 117497208 117497343 -35039916 - B1_Mus1 SINE Alu -13 135 1 1 1481 309 234 0 94 chr5 117497522 117497607 -35039652 + B4A SINE B4 216 292 0 1 1481 233 333 0 0 chr5 117497555 117497615 -35039644 + B3A SINE B2 121 180 -18 1 1481 289 219 125 0 chr5 117497779 117497843 -35039416 + B3A SINE B2 1 72 -126 1 1481 192 354 29 75 chr5 117497998 117498172 -35039087 - MIRb SINE MIR -31 237 72 1 1481 244 282 23 34 chr5 117498776 117498864 -35038395 - MLT1H LTR MaLR -6 543 457 1 1481 248 242 0 16 chr5 117499170 117499233 -35038026 - L2a LINE L2 -8 3418 3357 1 1481 1913 155 7 42 chr5 117499287 117499685 -35037574 - ORR1A3 LTR MaLR -8 386 1 1 1481 2371 74 7 0 chr5 117499690 117500000 -35037259 - MTB LTR MaLR 0 400 89 1 1481 587 125 0 0 chr5 117500000 117500088 -35037171 - MTB_Mm LTR MaLR -319 88 1 1 1481 768 273 16 16 chr5 117500406 117500592 -35036667 + ID_B1 SINE B4 27 212 -12 2 1481 258 192 12 110 chr5 117500913 117500995 -35036264 + MER90a LTR ERV1 296 369 -245 3 1481 616 230 128 0 chr5 117501001 117501149 -35036110 + ID_B1 SINE B4 1 167 -57 4 1481 572 0 15 0 chr5 117501246 117501314 -35035945 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1481 492 18 0 0 chr5 117501486 117501543 -35035716 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1481 358 257 106 81 chr5 117501688 117501972 -35035287 + B4 SINE B4 2 292 0 7 1481 293 294 80 80 chr5 117502908 117503045 -35034214 + RSINE1 SINE B4 29 165 0 8 1481 309 116 0 0 chr5 117503146 117503189 -35034070 - HAL1-3A_ME LINE L1 -840 2018 1976 9 1481 561 152 0 0 chr5 117503193 117503298 -35033961 + (TG)n Simple_repeat Simple_repeat 1 105 0 1 1481 320 336 16 16 chr5 117503313 117503434 -35033825 + (CGTG)n Simple_repeat Simple_repeat 1 121 0 1 1481 632 154 0 8 chr5 117503733 117503857 -35033402 + CT-rich Low_complexity Low_complexity 3 125 0 1 1481 638 183 3 3 chr5 117503874 117504176 -35033083 + CT-rich Low_complexity Low_complexity 1 302 0 1 1481 510 253 28 88 chr5 117504228 117504410 -35032849 - MER20 DNA MER1_type -7 212 42 1 1481 305 227 45 24 chr5 117504409 117504506 -35032753 - MTEa LTR MaLR -12 367 277 1 1481 802 272 11 5 chr5 117504948 117505133 -35032126 + B3 SINE B2 1 186 -30 1 1481 2061 104 26 111 chr5 117505140 117505518 -35031741 + ORR1A1 LTR MaLR 1 346 0 1 1481 217 51 0 49 chr5 117505569 117505610 -35031649 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1481 804 256 43 29 chr5 117505991 117506200 -35031059 - ID_B1 SINE B4 -7 217 6 1 1481 444 360 111 20 chr5 117506314 117506566 -35030693 + MER34A LTR ERV1 1 275 -296 1 1481 315 0 0 0 chr5 117506834 117506869 -35030390 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1481 243 300 0 101 chr5 117507041 117507130 -35030129 - MamRep137 DNA TcMar? -358 86 7 2 1481 350 193 67 22 chr5 117507165 117507255 -35030004 + Charlie9 DNA MER1_type 29 122 -2635 2 1481 240 137 0 0 chr5 117507384 117507435 -35029824 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 1481 356 55 18 0 chr5 117507438 117507493 -35029766 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1481 291 305 0 69 chr5 117507653 117507755 -35029504 + B4A SINE B4 100 194 -98 2 1481 343 383 18 6 chr5 117507742 117507905 -35029354 + B4 SINE B4 128 292 0 2 1481 421 161 71 77 chr5 117507932 117508114 -35029145 - Lx9 LINE L1 0 7644 7464 2 1481 184 175 70 16 chr5 117508121 117508249 -35029010 + (TA)n Simple_repeat Simple_repeat 2 136 0 2 1481 3247 62 5 15 chr5 117508257 117508668 -35028591 + MTB_Mm LTR MaLR 1 407 0 2 1481 302 137 71 52 chr5 117510038 117510192 -35027067 + (TA)n Simple_repeat Simple_repeat 2 158 0 3 1481 207 186 0 0 chr5 117510197 117510240 -35027019 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 3 1481 1287 213 30 12 chr5 117510252 117510584 -35026675 - Lx9 LINE L1 -119 7525 7188 3 1481 232 48 23 23 chr5 117511139 117511182 -35026077 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1481 433 192 192 90 chr5 117511259 117511436 -35025823 - B2_Mm2 SINE B2 0 195 1 3 1481 221 293 91 86 chr5 117511464 117511662 -35025597 - L2b LINE L2 -3 3372 3174 3 1481 272 330 17 92 chr5 117511859 117511979 -35025280 + B4 SINE B4 1 111 -181 3 1481 26 0 0 0 chr5 117511984 117512010 -35025249 + AT_rich Low_complexity Low_complexity 1 26 0 3 1481 580 264 117 6 chr5 117512010 117512189 -35025070 - B3 SINE B2 -17 199 1 3 1481 629 346 15 20 chr5 117512190 117512385 -35024874 + B4 SINE B4 97 290 -2 3 1481 223 209 35 9 chr5 117512479 117512595 -35024664 + (CA)n Simple_repeat Simple_repeat 2 120 0 3 1481 322 226 41 6 chr5 117512616 117512785 -35024474 + (CA)n Simple_repeat Simple_repeat 2 176 0 3 1481 534 184 23 11 chr5 117512808 117512984 -35024275 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1481 183 218 52 52 chr5 117513320 117513378 -35023881 + MER5A DNA MER1_type 40 97 -92 4 1481 258 257 135 29 chr5 117513580 117513684 -35023575 + MIR3 SINE MIR 58 172 -36 4 1481 904 164 11 0 chr5 117513798 117513975 -35023284 + GA-rich Low_complexity Low_complexity 2 180 0 4 1481 726 96 0 0 chr5 117513978 117514082 -35023177 + (GAAA)n Simple_repeat Simple_repeat 3 106 0 4 1481 394 303 171 6 chr5 117514177 117514353 -35022906 + ID_B1 SINE B4 2 206 -18 4 1481 185 178 0 22 chr5 117514354 117514400 -35022859 + GA-rich Low_complexity Low_complexity 2 46 0 4 1481 1198 48 0 13 chr5 117515838 117515987 -35021272 + B1_Mus1 SINE Alu 2 148 0 4 1481 734 280 34 11 chr5 117516235 117516502 -35020757 - L1MB3 LINE L1 -274 5909 5637 4 1481 324 0 0 0 chr5 117516654 117516690 -35020569 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1481 992 100 43 0 chr5 117516730 117516770 -35020489 - ORR1A4 LTR MaLR -19 310 278 4 1481 1482 73 5 0 chr5 117516770 117516961 -35020298 - B2_Mm2 SINE B2 -2 193 2 5 1481 992 88 43 0 chr5 117516961 117517076 -35020183 - ORR1A4 LTR MaLR -51 333 166 4 1481 454 319 133 9 chr5 117517340 117517558 -35019701 - MLT2B1 LTR ERVL -275 245 1 5 1481 850 182 0 33 chr5 117517588 117517741 -35019518 + B1_Mur3 SINE Alu 1 148 -1 5 1481 655 172 323 6 chr5 117518082 117518246 -35019013 + B3 SINE B2 1 216 0 5 1481 709 234 14 0 chr5 117518265 117518410 -35018849 + B3A SINE B2 23 169 -29 5 1481 282 236 28 131 chr5 117518521 117518628 -35018631 + B4A SINE B4 197 292 0 5 1481 214 294 41 52 chr5 117518921 117519018 -35018241 + MIR SINE MIR 46 141 -67 5 1481 477 0 0 0 chr5 117519095 117519148 -35018111 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1481 1575 160 214 20 chr5 117519917 117520267 -35016992 + MTD LTR MaLR 1 418 -1 5 1481 288 0 0 0 chr5 117520389 117520421 -35016838 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1481 326 279 43 51 chr5 117520466 117520583 -35016676 + Charlie5 DNA MER1_type 2423 2538 -86 6 1481 289 264 69 43 chr5 117520584 117520751 -35016508 + L1MA4 LINE L1 5693 5938 -362 6 1481 345 252 0 0 chr5 117520782 117520901 -35016358 + (TG)n Simple_repeat Simple_repeat 1 119 0 6 1481 349 310 98 55 chr5 117520983 117521147 -35016112 + LTR16C LTR ERVL 351 568 0 6 1481 210 208 0 0 chr5 117522141 117522194 -35015065 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1481 494 326 0 0 chr5 117522227 117522405 -35014854 + (CATG)n Simple_repeat Simple_repeat 3 180 0 6 1481 261 0 0 0 chr5 117522406 117522435 -35014824 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1481 468 0 0 0 chr5 117522435 117522486 -35014773 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1481 597 28 0 0 chr5 117522910 117522981 -35014278 + (GA)n Simple_repeat Simple_repeat 2 72 0 6 1481 23 33 0 0 chr5 117523007 117523037 -35014222 + AT_rich Low_complexity Low_complexity 1 30 0 6 1481 873 223 14 23 chr5 117523037 117523253 -35014006 - B3 SINE B2 0 216 3 7 1481 1587 42 16 10 chr5 117523303 117523497 -35013762 - B2_Mm2 SINE B2 0 195 1 7 1481 643 191 9 0 chr5 117523532 117523647 -35013612 + PB1D9 SINE Alu 4 119 -1 7 1481 456 135 0 0 chr5 117523830 117523904 -35013355 + (GGA)n Simple_repeat Simple_repeat 3 76 0 7 1481 425 228 24 0 chr5 117523913 117524036 -35013223 + Lx8 LINE L1 7346 7471 -2 7 1481 343 261 0 28 chr5 117525095 117525166 -35012093 + RSINE1 SINE B4 81 149 -16 7 1481 225 65 0 0 chr5 117525171 117525202 -35012057 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1481 225 0 0 0 chr5 117525532 117525557 -35011702 + (TA)n Simple_repeat Simple_repeat 1 25 0 7 1481 854 131 7 0 chr5 117525599 117525744 -35011515 + (TAGA)n Simple_repeat Simple_repeat 4 149 0 7 1481 484 347 39 27 chr5 117525843 117526101 -35011158 + MER2 DNA MER2_type 85 345 0 7 1481 372 237 20 30 chr5 117526687 117526787 -35010472 + ID_B1 SINE B4 69 167 -57 8 1481 398 240 48 29 chr5 117526713 117526816 -35010443 + PB1D10 SINE Alu 13 117 0 8 1481 293 262 170 28 chr5 117526820 117526926 -35010333 + MER117 DNA MER1_type 76 196 -1 8 1481 664 232 42 104 chr5 117528063 117528255 -35009004 + B3A SINE B2 3 182 -16 8 1481 1030 106 0 21 chr5 117528301 117528446 -35008813 + B1_Mur3 SINE Alu 2 143 -6 8 1481 576 0 0 0 chr5 117528451 117528515 -35008744 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 8 1481 277 190 35 23 chr5 117528545 117528631 -35008628 + HAL1 LINE L1 1089 1175 -1332 8 1481 1574 183 111 9 chr5 117528672 117529014 -35008245 + MTE2b LTR MaLR 1 377 -2 8 1481 274 314 64 37 chr5 117529074 117529183 -35008076 - MLT1F1 LTR MaLR 0 653 542 8 1481 384 214 28 101 chr5 117529153 117529184 -35008075 - PB1D10 SINE Alu -9 108 79 8 1481 1228 227 77 103 chr5 117529184 117529572 -35007687 + MTE2a LTR MaLR 2 379 0 9 1481 384 214 28 101 chr5 117529572 117529649 -35007610 - PB1D10 SINE Alu -39 78 8 8 1481 449 317 91 55 chr5 117529661 117529881 -35007378 - MLT1F1 LTR MaLR -98 471 244 8 1481 536 256 46 48 chr5 117530100 117530310 -35006949 - MER2 DNA MER2_type -38 307 105 9 1481 2016 150 12 11 chr5 117530765 117531151 -35006108 - ORR1A1 LTR MaLR 0 346 17 9 1481 437 178 0 66 chr5 117531141 117531299 -35005960 - ORR1A1 LTR MaLR -249 118 1 9 1481 233 305 55 91 chr5 117531625 117531845 -35005414 + HAL1 LINE L1 1945 2156 -351 8 1481 1146 221 14 5 chr5 117532041 117532255 -35005004 + ID_B1 SINE B4 9 224 0 9 1481 242 325 0 12 chr5 117532256 117532340 -35004919 + GA-rich Low_complexity Low_complexity 1 83 0 9 1481 804 106 21 7 chr5 117532342 117532485 -35004774 + (AGGGGG)n Simple_repeat Simple_repeat 3 147 0 9 1481 432 0 0 0 chr5 117532488 117532536 -35004723 + (GGAGA)n Simple_repeat Simple_repeat 1 48 0 9 1481 253 300 91 87 chr5 117532985 117533226 -35004033 - ORR1E LTR MaLR 0 359 118 9 1481 1406 201 25 7 chr5 117533288 117533563 -35003696 - RMER15 LTR ERVL 0 575 296 9 1481 598 218 49 49 chr5 117533554 117533718 -35003541 - RMER15 LTR ERVL -390 185 22 9 1481 524 223 0 59 chr5 117533867 117533964 -35003295 - RSINE1 SINE B4 -53 112 18 1 1481 552 15 0 0 chr5 117533964 117534029 -35003230 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 1481 366 42 0 0 chr5 117534029 117534076 -35003183 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1481 524 223 0 59 chr5 117534076 117534096 -35003163 - RSINE1 SINE B4 -148 17 2 1 1481 529 200 148 14 chr5 117534101 117534243 -35003016 - Lx8 LINE L1 -64 7409 7249 1 1481 3598 106 97 35 chr5 117534366 117534932 -35002327 + MT2B LTR ERVL 1 601 0 1 1481 202 229 0 76 chr5 117535202 117535268 -35001991 + GA-rich Low_complexity Low_complexity 1 61 0 1 1481 256 193 35 0 chr5 117535484 117535541 -35001718 + Lx8 LINE L1 7118 7176 -297 1 1481 886 129 71 0 chr5 117535779 117535919 -35001340 - B1_Mur4 SINE Alu 0 150 1 1 1481 1464 209 121 35 chr5 117536671 117537043 -35000216 - MTD LTR MaLR -14 405 2 1 1481 856 190 101 105 chr5 117538267 117538543 -34998716 + B4A SINE B4 3 277 -15 1 1481 279 0 0 0 chr5 117538626 117538657 -34998602 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1481 207 0 0 0 chr5 117539377 117539400 -34997859 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1481 462 297 0 0 chr5 117539508 117539609 -34997650 - RSINE1 SINE B4 -59 106 6 1 1481 365 243 62 80 chr5 117539616 117539728 -34997531 - B1_Mus2 SINE Alu -24 123 14 1 1481 687 279 56 69 chr5 117539732 117539963 -34997296 - B4 SINE B4 -64 228 1 1 1481 180 0 0 0 chr5 117540029 117540049 -34997210 + (G)n Simple_repeat Simple_repeat 1 20 0 1 1481 740 173 7 22 chr5 117540509 117540645 -34996614 - B2_Mm1a SINE B2 -59 134 1 1 1481 1452 51 39 0 chr5 117540654 117540832 -34996427 - B2_Mm2 SINE B2 -10 185 1 1 1481 192 77 0 0 chr5 117545136 117545162 -34992097 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 1 1481 811 254 107 4 chr5 117545173 117545406 -34991853 - B4A SINE B4 -35 257 1 1 1481 203 146 24 0 chr5 117545764 117545805 -34991454 + GA-rich Low_complexity Low_complexity 1 42 0 1 1481 216 241 0 0 chr5 117546533 117546591 -34990668 + GA-rich Low_complexity Low_complexity 5 62 0 1 1481 243 323 126 25 chr5 117548671 117548830 -34988429 - 7SLRNA srpRNA srpRNA -52 262 88 1 1481 337 239 14 0 chr5 117551861 117551944 -34985315 + ID4 SINE ID 3 86 -66 1 1481 352 303 11 127 chr5 117553023 117553216 -34984043 + B3A SINE B2 40 210 -6 1 1481 313 262 134 97 chr5 117556249 117556435 -34980824 + B2_Mm2 SINE B2 2 194 -1 1 1481 1348 207 101 100 chr5 117557089 117557540 -34979719 + MT2A LTR ERVL 2 586 -15 1 1481 586 250 49 0 chr5 117559349 117559493 -34977766 - RSINE1 SINE B4 -12 153 3 1 1481 333 0 0 0 chr5 117559978 117560015 -34977244 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1481 292 310 96 52 chr5 117560115 117560251 -34977008 + RSINE1 SINE B4 2 143 -22 1 1481 1585 49 0 0 chr5 117560297 117560482 -34976777 + B2_Mm1a SINE B2 3 187 -6 1 1481 712 165 259 0 chr5 117561179 117561349 -34975910 + B3 SINE B2 3 216 0 1 1481 373 215 35 53 chr5 117561853 117561966 -34975293 + PB1D7 SINE Alu 1 111 -9 1 1481 379 238 37 28 chr5 117562013 117562121 -34975138 + PB1 SINE Alu 4 112 -15 1 1481 564 256 22 0 chr5 117562180 117562317 -34974942 + B1_Mur3 SINE Alu 5 144 -5 1 1481 219 36 0 0 chr5 117563025 117563053 -34974206 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1481 213 65 0 0 chr5 117563304 117563335 -34973924 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1481 491 293 42 57 chr5 117563415 117563607 -34973652 + B3A SINE B2 1 189 -9 1 1481 1143 82 0 0 chr5 117563634 117563781 -34973478 + B1_Mus2 SINE Alu 1 147 0 1 1481 297 208 254 70 chr5 117563798 117563891 -34973368 - B3 SINE B2 0 216 102 1 1481 3994 128 64 33 chr5 117563891 117564568 -34972691 - RMER6A LTR ERVK 0 756 61 1 1481 180 0 0 0 chr5 117564568 117564588 -34972671 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1481 3994 128 64 33 chr5 117564588 117564643 -34972616 - RMER6A LTR ERVK -696 60 3 1 1481 297 208 254 70 chr5 117564643 117564663 -34972596 - B3 SINE B2 -115 101 82 1 1481 221 0 0 33 chr5 117564842 117564872 -34972387 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1481 704 134 76 0 chr5 117566848 117566967 -34970292 + B1_Mur3 SINE Alu 22 149 0 1 1481 429 180 0 0 chr5 117567049 117567138 -34970121 + GA-rich Low_complexity Low_complexity 2 90 0 1 1481 961 42 8 0 chr5 117567141 117567260 -34969999 + B1_Mus1 SINE Alu 29 148 0 1 1481 213 154 0 0 chr5 117567263 117567302 -34969957 + GA-rich Low_complexity Low_complexity 2 40 0 1 1481 368 269 25 86 chr5 117567308 117567471 -34969788 + ID_B1 SINE B4 69 221 -3 1 1481 410 285 43 28 chr5 117567335 117567476 -34969783 + B1F1 SINE Alu 7 149 0 1 1481 459 0 0 0 chr5 117568016 117568067 -34969192 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1481 423 0 0 0 chr5 117568067 117568113 -34969146 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1481 352 340 30 89 chr5 117568690 117568755 -34968504 + ID_B1 SINE B4 34 224 0 1 1481 492 250 51 14 chr5 117568755 117568893 -34968366 + B1_Mur1 SINE Alu 7 149 0 1 1481 854 84 28 0 chr5 117569311 117569453 -34967806 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 1 1481 380 267 0 0 chr5 117569456 117569542 -34967717 - PB1D7 SINE Alu -8 112 27 1 1481 23 0 0 0 chr5 117570312 117570335 -34966924 + GC_rich Low_complexity Low_complexity 1 23 0 1 1482 508 148 109 0 chr5 117572381 117572482 -34964777 + B1F SINE Alu 32 143 -6 1 1482 229 276 118 0 chr5 117572621 117572697 -34964562 - MER90a LTR ERV1 -450 164 80 1 1482 221 237 85 73 chr5 117572650 117572732 -34964527 - ID2 SINE ID 0 83 1 1 1482 219 36 0 0 chr5 117572996 117573024 -34964235 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1482 218 293 0 0 chr5 117573054 117573112 -34964147 + G-rich Low_complexity Low_complexity 3 60 0 1 1482 1993 94 8 158 chr5 117573956 117574347 -34962912 + ORR1A2 LTR MaLR 5 319 -8 1 1482 420 218 0 0 chr5 117574354 117574487 -34962772 + (CA)n Simple_repeat Simple_repeat 2 134 0 1 1482 364 274 74 0 chr5 117574961 117575056 -34962203 - RSINE1 SINE B4 -5 160 59 1 1482 729 232 7 7 chr5 117575066 117575209 -34962050 - B3 SINE B2 -70 146 4 1 1482 32 0 0 0 chr5 117575429 117575461 -34961798 + AT_rich Low_complexity Low_complexity 1 32 0 1 1482 313 195 83 24 chr5 117575644 117575728 -34961531 - Lx8 LINE L1 -363 7110 7022 1 1482 210 232 16 116 chr5 117576084 117576274 -34960985 + C-rich Low_complexity Low_complexity 3 173 0 1 1482 377 309 31 36 chr5 117576274 117576469 -34960790 - Lx8 LINE L1 -432 7041 6848 1 1482 1155 82 0 0 chr5 117576760 117576907 -34960352 - B1_Mus1 SINE Alu 0 148 2 1 1482 366 23 0 0 chr5 117576950 117576993 -34960266 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 1 1482 534 217 0 28 chr5 117576993 117577102 -34960157 - PB1D10 SINE Alu -11 106 1 1 1482 3371 31 15 0 chr5 117577426 117577816 -34959443 - MTA_Mm LTR MaLR 0 396 1 1 1482 520 277 58 7 chr5 117578060 117578198 -34959061 + B3A SINE B2 2 146 -52 1 1482 741 70 0 0 chr5 117578199 117578299 -34958960 + (TC)n Simple_repeat Simple_repeat 1 100 0 1 1482 22 0 0 0 chr5 117578338 117578360 -34958899 + AT_rich Low_complexity Low_complexity 1 22 0 1 1482 279 0 0 0 chr5 117578576 117578607 -34958652 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 1 1482 278 220 0 33 chr5 117578766 117578827 -34958432 - MIRm SINE MIR -130 146 88 1 1482 597 148 46 69 chr5 117579325 117579456 -34957803 - B1_Mus1 SINE Alu 0 148 21 1 1482 262 329 138 125 chr5 117579633 117579713 -34957546 + RSINE1 SINE B4 3 101 -64 1 1482 414 0 0 0 chr5 117579713 117579759 -34957500 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1482 1198 49 0 0 chr5 117579761 117579904 -34957355 - B1_Mus1 SINE Alu -4 144 2 1 1482 262 329 138 125 chr5 117579904 117579980 -34957279 + RSINE1 SINE B4 102 164 -1 1 1482 28 0 0 64 chr5 117580003 117580050 -34957209 + AT_rich Low_complexity Low_complexity 1 44 0 1 1482 638 279 57 21 chr5 117580050 117580244 -34957015 - B3 SINE B2 -12 204 4 1 1482 793 249 39 30 chr5 117580270 117580473 -34956786 + B4A SINE B4 84 288 -4 1 1482 656 189 0 32 chr5 117580529 117580715 -34956544 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1482 189 300 0 0 chr5 117580728 117580838 -34956421 + (CA)n Simple_repeat Simple_repeat 1 110 0 1 1482 260 236 13 53 chr5 117581733 117581809 -34955450 - PB1D10 SINE Alu -20 97 25 1 1482 777 134 7 22 chr5 117582044 117582181 -34955078 - URR1B DNA MER1_type -1 224 90 1 1482 294 213 193 70 chr5 117582181 117582303 -34954956 - URR1B DNA MER1_type -209 130 1 1 1482 611 312 26 11 chr5 117582408 117582599 -34954660 - B3A SINE B2 -4 194 1 1 1482 351 237 0 0 chr5 117582614 117582690 -34954569 - B1F SINE Alu -7 142 67 1 1482 1250 111 0 6 chr5 117582830 117583011 -34954248 + B2_Mm2 SINE B2 2 181 -14 1 1482 1275 27 0 0 chr5 117583024 117583171 -34954088 - B1_Mm SINE Alu 0 147 1 1 1482 1040 64 7 0 chr5 117583189 117583330 -34953929 + (GAAA)n Simple_repeat Simple_repeat 2 143 0 1 1482 396 0 0 0 chr5 117583479 117583523 -34953736 + (GA)n Simple_repeat Simple_repeat 1 44 0 1 1482 225 83 0 0 chr5 117583888 117583924 -34953335 + (GCCTG)n Simple_repeat Simple_repeat 5 40 0 1 1482 1733 168 32 58 chr5 117585079 117585459 -34951800 - Lx4A LINE L1 0 7058 6689 1 1482 462 18 0 0 chr5 117585804 117585859 -34951400 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1482 186 71 0 0 chr5 117585870 117585898 -34951361 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1482 300 154 0 0 chr5 117586404 117586456 -34950803 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1482 240 295 10 31 chr5 117586602 117586700 -34950559 + (CATA)n Simple_repeat Simple_repeat 2 97 0 1 1482 235 239 32 74 chr5 117586704 117586799 -34950460 + MIRb SINE MIR 112 202 -66 2 1482 215 140 60 0 chr5 117586938 117586988 -34950271 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 1482 247 312 52 10 chr5 117587744 117587841 -34949418 - B4 SINE B4 -148 144 44 2 1482 479 209 9 18 chr5 117588538 117588650 -34948609 - PB1D10 SINE Alu -6 111 1 2 1482 358 308 106 0 chr5 117588977 117589081 -34948178 - ID_B1 SINE B4 -2 222 108 2 1482 689 180 0 70 chr5 117589086 117589229 -34948030 - B1_Mur1 SINE Alu -16 133 1 2 1482 510 249 119 72 chr5 117589299 117589550 -34947709 - L1MB7 LINE L1 -193 5991 5729 2 1482 198 0 0 0 chr5 117589591 117589613 -34947646 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 1482 228 35 0 0 chr5 117589613 117589641 -34947618 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 1482 333 232 21 6 chr5 117589711 117589808 -34947451 - L1MB7 LINE L1 -2276 5719 5625 2 1482 540 231 19 0 chr5 117591733 117591837 -34945422 - B1_Mur1 SINE Alu -4 145 40 2 1482 555 131 43 12 chr5 117592220 117592382 -34944877 + (CA)n Simple_repeat Simple_repeat 1 167 0 2 1482 372 186 40 11 chr5 117592892 117593066 -34944193 + (TA)n Simple_repeat Simple_repeat 1 179 0 2 1482 1043 208 10 10 chr5 117593066 117593270 -34943989 - B3 SINE B2 -11 205 2 2 1482 433 269 13 66 chr5 117593297 117593448 -34943811 + URR1A DNA MER1_type 84 226 0 2 1482 626 214 69 31 chr5 117593502 117593632 -34943627 - RSINE1 SINE B4 -28 137 3 2 1482 463 232 21 0 chr5 117594193 117594288 -34942971 + B1_Mur4 SINE Alu 18 114 -36 2 1482 229 308 0 150 chr5 117594197 117594350 -34942909 + MT2B2 LTR ERVL 185 314 -270 2 1482 400 273 16 32 chr5 117594882 117595007 -34942252 - RSINE1 SINE B4 -40 125 3 2 1482 261 296 148 20 chr5 117595397 117595600 -34941659 - L1MDa LINE L1 -6300 333 105 2 1482 803 264 0 6 chr5 117595688 117595852 -34941407 - RSINE1 SINE B4 0 165 3 2 1482 21 0 0 0 chr5 117596022 117596043 -34941216 + AT_rich Low_complexity Low_complexity 1 21 0 2 1482 2781 104 68 46 chr5 117596065 117596567 -34940692 - RLTR11A LTR ERVK 0 528 16 2 1482 326 298 60 68 chr5 117596634 117596767 -34940492 - L1M5 LINE L1 -2942 3204 3073 2 1482 511 260 39 16 chr5 117597077 117597206 -34940053 - B1_Mur1 SINE Alu -6 143 12 2 1482 279 302 32 109 chr5 117597206 117597230 -34940029 - ID_B1 SINE B4 -3 218 78 2 1482 1105 186 24 10 chr5 117597795 117598001 -34939258 + B3 SINE B2 1 209 -7 2 1482 572 189 65 7 chr5 117598265 117598388 -34938871 + PB1D9 SINE Alu 1 124 -23 2 1482 33 0 0 0 chr5 117598602 117598635 -34938624 + AT_rich Low_complexity Low_complexity 1 33 0 2 1482 254 180 16 0 chr5 117599312 117599373 -34937886 + CT-rich Low_complexity Low_complexity 4 65 0 2 1482 306 0 0 0 chr5 117600664 117600698 -34936561 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1482 261 83 0 0 chr5 117600731 117600767 -34936492 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1482 688 237 29 23 chr5 117600934 117601107 -34936152 - B3 SINE B2 -13 203 30 2 1482 1972 187 62 5 chr5 117601130 117601517 -34935742 + MTD LTR MaLR 10 418 -1 2 1482 243 60 0 82 chr5 117601553 117601626 -34935633 + (TTTTG)n Simple_repeat Simple_repeat 2 68 0 2 1482 199 430 0 12 chr5 117602078 117602158 -34935101 + L2b LINE L2 3294 3372 -3 2 1482 456 185 0 12 chr5 117602433 117602515 -34934744 - PB1D10 SINE Alu -2 115 35 2 1482 322 275 0 28 chr5 117602558 117602629 -34934630 - RSINE1 SINE B4 -17 148 80 2 1482 207 0 0 0 chr5 117602633 117602656 -34934603 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2 1482 1222 48 0 0 chr5 117602656 117602802 -34934457 - B1_Mm SINE Alu 0 147 2 2 1482 267 324 50 81 chr5 117602858 117603019 -34934240 - B4A SINE B4 -135 157 2 2 1482 918 173 128 11 chr5 117603066 117603253 -34934006 - B3 SINE B2 -5 211 3 2 1482 335 161 113 0 chr5 117604210 117604272 -34932987 - ID4_ SINE ID -4 79 11 2 1482 267 250 0 152 chr5 117604439 117604557 -34932702 - B3A SINE B2 0 198 99 2 1482 715 217 0 0 chr5 117604559 117604697 -34932562 + B1_Mur4 SINE Alu 4 141 -9 2 1482 234 0 0 0 chr5 117605176 117605202 -34932057 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 1482 369 0 0 0 chr5 117605202 117605242 -34932017 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1482 210 191 0 41 chr5 117605265 117605314 -34931945 - PB1 SINE Alu -1 126 80 2 1482 269 206 11 0 chr5 117605349 117605441 -34931818 + (CA)n Simple_repeat Simple_repeat 2 94 0 2 1482 365 293 0 57 chr5 117605857 117605962 -34931297 - PB1 SINE Alu 0 127 29 2 1482 237 65 0 0 chr5 117605962 117605993 -34931266 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 1482 566 221 48 19 chr5 117606125 117606264 -34930995 - B1_Mur1 SINE Alu -8 139 1 2 1482 275 310 0 147 chr5 117606539 117606641 -34930618 + Cheshire DNA MER1_type 4 90 -2330 2 1482 814 158 14 21 chr5 117606672 117606814 -34930445 - B1_Mur4 SINE Alu 0 150 10 2 1482 404 250 45 123 chr5 117606675 117606830 -34930429 - B4 SINE B4 -69 223 81 2 1482 373 128 39 0 chr5 117607157 117607235 -34930024 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2 1482 604 226 32 8 chr5 117607275 117607400 -34929859 - B1_Mur1 SINE Alu -12 137 10 2 1482 367 259 23 101 chr5 117607303 117607432 -34929827 - MT2B LTR ERVL -338 263 145 2 1482 220 146 20 20 chr5 117607434 117607483 -34929776 + T-rich Low_complexity Low_complexity 3 51 0 2 1482 905 101 49 21 chr5 117607492 117607634 -34929625 - B1_Mus1 SINE Alu -1 147 2 2 1482 22 0 0 0 chr5 117607644 117607666 -34929593 + AT_rich Low_complexity Low_complexity 1 22 0 2 1482 218 254 18 0 chr5 117607843 117607898 -34929361 - BC1_Mm scRNA scRNA -59 93 38 2 1482 865 239 158 49 chr5 117607919 117608272 -34928987 - MTD LTR MaLR -16 403 1 2 1482 387 0 0 0 chr5 117608459 117608502 -34928757 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1482 976 220 45 0 chr5 117609008 117609208 -34928051 + B3 SINE B2 1 209 -7 2 1482 533 280 32 0 chr5 117609280 117609437 -34927822 - RSINE1 SINE B4 -3 162 1 2 1482 646 286 50 5 chr5 117609471 117609671 -34927588 - ID_B1 SINE B4 -14 210 2 2 1482 1096 262 79 79 chr5 117610127 117610496 -34926763 + MTE2b LTR MaLR 3 371 -8 2 1482 354 297 53 26 chr5 117610528 117610642 -34926617 - PB1D7 SINE Alu -3 117 1 2 1482 218 304 58 0 chr5 117610858 117610927 -34926332 - ID4_ SINE ID -3 80 8 2 1482 250 254 79 0 chr5 117611007 117611070 -34926189 - ID4_ SINE ID -14 69 2 2 1482 23 33 0 0 chr5 117611251 117611281 -34925978 + AT_rich Low_complexity Low_complexity 1 30 0 2 1482 919 136 0 0 chr5 117611354 117611494 -34925765 - B3 SINE B2 -75 141 2 2 1482 22 35 0 0 chr5 117611676 117611705 -34925554 + AT_rich Low_complexity Low_complexity 1 29 0 2 1482 227 233 102 54 chr5 117611749 117611935 -34925324 - L1M7 LINE L1 -4821 1397 1203 2 1482 189 0 0 0 chr5 117612002 117612023 -34925236 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2 1482 507 33 0 0 chr5 117613118 117613179 -34924080 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 1482 243 0 0 0 chr5 117613179 117613206 -34924053 + (TTG)n Simple_repeat Simple_repeat 3 29 0 2 1482 230 319 0 27 chr5 117613206 117613280 -34923979 - ID4_ SINE ID -11 72 1 2 1482 1271 41 0 0 chr5 117613428 117613575 -34923684 - B1_Mus2 SINE Alu 0 147 1 2 1482 1020 218 24 0 chr5 117613601 117613807 -34923452 - B3 SINE B2 -4 212 2 2 1482 1444 74 26 0 chr5 117614345 117614534 -34922725 - B2_Mm2 SINE B2 0 195 2 2 1482 652 291 219 4 chr5 117614545 117614787 -34922472 + MTE2a LTR MaLR 85 378 -1 2 1482 317 234 52 0 chr5 117615202 117615279 -34921980 + ID_B1 SINE B4 138 218 -6 2 1482 673 269 45 25 chr5 117615395 117615593 -34921666 + B3 SINE B2 2 203 -13 2 1482 180 0 0 0 chr5 117615593 117615613 -34921646 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1482 741 270 51 23 chr5 117615838 117616054 -34921205 - ID_B1 SINE B4 0 224 3 2 1482 367 284 0 11 chr5 117616404 117616493 -34920766 + B1F1 SINE Alu 7 94 -55 2 1482 206 50 100 0 chr5 117616577 117616617 -34920642 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 2 1482 900 107 0 0 chr5 117616629 117616750 -34920509 - B1_Mur2 SINE Alu -7 142 22 2 1482 226 295 40 40 chr5 117616981 117617080 -34920179 - MIRb SINE MIR -124 144 46 2 1482 466 241 57 49 chr5 117617418 117617540 -34919719 + B3 SINE B2 85 207 -9 2 1482 531 229 41 0 chr5 117617670 117617792 -34919467 - RSINE1 SINE B4 -37 128 2 2 1482 899 204 105 0 chr5 117619339 117619530 -34917729 - B3 SINE B2 -5 211 1 2 1482 243 103 0 0 chr5 117619583 117619622 -34917637 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1482 711 319 65 23 chr5 117619701 117619961 -34917298 - B4A SINE B4 -1 291 21 2 1482 210 271 27 41 chr5 117619896 117619969 -34917290 - B3A SINE B2 -118 80 9 2 1482 228 111 0 0 chr5 117620019 117620055 -34917204 + (TCTCCC)n Simple_repeat Simple_repeat 2 37 0 2 1482 640 283 0 0 chr5 117620060 117620205 -34917054 - B1_Mur2 SINE Alu 0 149 5 2 1482 387 0 0 0 chr5 117620527 117620570 -34916689 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1482 457 267 106 43 chr5 117620584 117620725 -34916534 - B4A SINE B4 0 292 143 2 1482 1124 186 78 0 chr5 117621475 117621668 -34915591 - B3 SINE B2 -6 210 3 2 1482 198 0 79 26 chr5 117621678 117621716 -34915543 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3 1482 644 256 36 12 chr5 117621763 117621959 -34915300 + B3A SINE B2 1 202 -14 3 1482 1238 48 7 0 chr5 117621959 117622105 -34915154 + B1_Mus2 SINE Alu 1 147 0 3 1482 545 274 71 47 chr5 117622105 117622119 -34915140 + B3 SINE B2 203 216 0 3 1482 973 230 34 24 chr5 117622389 117622594 -34914665 - B3 SINE B2 -2 214 8 3 1482 30 56 0 27 chr5 117622601 117622628 -34914631 + AT_rich Low_complexity Low_complexity 1 26 0 3 1482 967 155 13 7 chr5 117622628 117622772 -34914487 + B1_Mur4 SINE Alu 1 146 -4 3 1482 864 59 0 0 chr5 117622772 117622891 -34914368 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 3 1482 30 56 0 27 chr5 117622891 117622940 -34914319 + AT_rich Low_complexity Low_complexity 1 45 0 3 1482 727 212 8 0 chr5 117622968 117623100 -34914159 - RSINE1 SINE B4 -31 134 2 3 1482 685 239 64 23 chr5 117623117 117623288 -34913971 - B4A SINE B4 0 292 115 3 1482 592 192 25 8 chr5 117623850 117623971 -34913288 + ID_B1 SINE B4 102 224 0 3 1482 232 225 0 0 chr5 117624048 117624088 -34913171 - ID4_ SINE ID -22 61 22 3 1482 381 86 0 0 chr5 117624461 117624519 -34912740 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 1482 627 214 19 58 chr5 117624525 117624679 -34912580 - B3A SINE B2 -47 151 4 3 1482 327 306 50 0 chr5 117624964 117625085 -34912174 + L1MA4A LINE L1 5803 5929 -374 3 1482 185 240 32 13 chr5 117625137 117625293 -34911966 + (TA)n Simple_repeat Simple_repeat 1 159 0 3 1482 286 295 179 22 chr5 117625327 117625556 -34911703 - MLT1B LTR MaLR -82 308 44 3 1482 317 265 146 49 chr5 117625592 117625715 -34911544 + B4A SINE B4 86 220 -72 3 1482 381 274 0 78 chr5 117625605 117625720 -34911539 + PB1D9 SINE Alu 13 118 -2 3 1482 223 219 15 15 chr5 117626285 117626350 -34910909 + T-rich Low_complexity Low_complexity 4 68 0 3 1482 893 151 0 40 chr5 117626390 117626542 -34910717 + B1F2 SINE Alu 1 146 -3 3 1482 249 33 0 0 chr5 117626580 117626610 -34910649 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1482 963 228 34 0 chr5 117626616 117626822 -34910437 + B3 SINE B2 1 213 -3 3 1482 984 99 34 34 chr5 117627440 117627587 -34909672 + B1_Mus1 SINE Alu 2 148 0 3 1482 808 236 39 39 chr5 117627656 117627859 -34909400 - ORR1D1 LTR MaLR -171 203 1 3 1482 704 241 41 49 chr5 117628096 117628362 -34908897 - L1M2 LINE L1 -710 5590 5327 3 1482 1192 315 37 22 chr5 117628509 117628964 -34908295 - RCHARR1 DNA MER1_type -505 469 8 3 1482 589 341 6 6 chr5 117628976 117629144 -34908115 + B4A SINE B4 2 169 -123 3 1482 221 328 31 0 chr5 117629284 117629348 -34907911 + L2b LINE L2 3309 3374 -1 3 1482 950 198 20 35 chr5 117629642 117629841 -34907418 - B3A SINE B2 -2 196 1 3 1482 831 252 49 15 chr5 117629974 117630179 -34907080 + B3 SINE B2 3 214 -2 3 1482 765 228 12 28 chr5 117631177 117631376 -34905883 - B3A SINE B2 -4 191 2 3 1482 213 208 0 38 chr5 117631661 117631741 -34905518 + GA-rich Low_complexity Low_complexity 2 78 0 3 1482 338 292 166 67 chr5 117632434 117632896 -34904363 + L1MB7 LINE L1 5668 6168 -10 3 1482 681 219 122 129 chr5 117633031 117633325 -34903934 + B4A SINE B4 1 292 0 3 1482 852 129 19 52 chr5 117633538 117633693 -34903566 + B1_Mur4 SINE Alu 1 150 0 3 1482 519 286 6 73 chr5 117633813 117633842 -34903417 + ID_B1 SINE B4 60 224 0 3 1482 829 163 0 47 chr5 117633842 117633990 -34903269 + B1_Mur1 SINE Alu 9 149 0 3 1482 390 206 14 0 chr5 117634001 117634074 -34903185 + B4A SINE B4 3 76 -216 3 1482 696 250 81 10 chr5 117634335 117634533 -34902726 - B4 SINE B4 0 292 81 3 1482 27 0 0 0 chr5 117634603 117634630 -34902629 + AT_rich Low_complexity Low_complexity 1 27 0 3 1482 917 215 39 14 chr5 117634941 117635149 -34902110 - B3 SINE B2 0 216 4 3 1482 309 333 0 87 chr5 117635357 117635495 -34901764 - PB1 SINE Alu -1 126 1 3 1482 750 243 22 11 chr5 117635760 117635972 -34901287 + B3A SINE B2 3 216 0 3 1482 832 269 42 62 chr5 117636023 117636312 -34900947 + B4A SINE B4 2 284 -8 3 1482 287 294 140 19 chr5 117636386 117636571 -34900688 - L1M3 LINE L1 -640 5522 5317 3 1482 1421 70 43 0 chr5 117636623 117636809 -34900450 + B2_Mm2 SINE B2 2 195 0 3 1482 1007 213 11 0 chr5 117636815 117637003 -34900256 + B3 SINE B2 27 216 0 3 1482 2890 82 4 68 chr5 117637362 117637846 -34899413 - RLTR19-int LTR ERVK -4125 2012 1560 3 1482 464 291 39 62 chr5 117638194 117638483 -34898776 - L1MEf LINE L1 -4581 1834 1556 3 1482 866 217 64 43 chr5 117638494 117638804 -34898455 - MTE2b LTR MaLR -17 362 2 3 1482 712 225 124 50 chr5 117638839 117639040 -34898219 - B3 SINE B2 0 216 1 3 1482 376 341 11 33 chr5 117639040 117639222 -34898037 - L1MEf LINE L1 -4947 1453 1276 3 1482 975 126 195 0 chr5 117639225 117639399 -34897860 - B3 SINE B2 -4 212 5 3 1482 270 132 0 0 chr5 117639493 117639546 -34897713 + (CTTG)n Simple_repeat Simple_repeat 2 54 0 3 1482 260 160 0 61 chr5 117639783 117639857 -34897402 + PB1D7 SINE Alu 59 123 -26 3 1482 350 278 58 48 chr5 117640146 117640354 -34896905 - L1MEf LINE L1 -6184 216 7 3 1482 288 0 0 0 chr5 117640460 117640492 -34896767 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1482 21 0 0 0 chr5 117641041 117641062 -34896197 + AT_rich Low_complexity Low_complexity 1 21 0 3 1482 1469 73 21 0 chr5 117641071 117641262 -34895997 + B2_Mm2 SINE B2 1 195 0 3 1482 265 24 23 23 chr5 117641361 117641404 -34895855 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3 1482 280 240 131 30 chr5 117642293 117642392 -34894867 - L1MB7 LINE L1 -250 5924 5816 3 1482 411 314 17 0 chr5 117642404 117642522 -34894737 - ID_B1 SINE B4 -21 203 84 3 1482 384 322 60 0 chr5 117642524 117642707 -34894552 - L1MB7 LINE L1 -357 5827 5634 3 1482 465 66 0 0 chr5 117642740 117642801 -34894458 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1482 549 202 87 16 chr5 117642822 117642948 -34894311 - B3A SINE B2 -63 135 1 3 1482 270 0 0 0 chr5 117643022 117643052 -34894207 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 3 1482 389 273 102 60 chr5 117643065 117643349 -34893910 - L1MB7 LINE L1 -610 5574 5279 3 1482 397 290 115 7 chr5 117643393 117643532 -34893727 - RSINE1 SINE B4 -9 156 3 3 1482 293 311 22 137 chr5 117644158 117644385 -34892874 + L2b LINE L2 3187 3387 0 3 1482 815 186 5 0 chr5 117644385 117644613 -34892646 + (TGGA)n Simple_repeat Simple_repeat 1 229 0 3 1482 386 165 271 0 chr5 117645240 117645325 -34891934 + PB1D9 SINE Alu 1 108 -12 3 1482 222 37 0 0 chr5 117645325 117645352 -34891907 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 3 1482 269 300 84 8 chr5 117645731 117645862 -34891397 + L2c LINE L2 3057 3197 -190 3 1482 201 94 0 0 chr5 117645960 117645992 -34891267 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 3 1482 225 239 155 0 chr5 117646018 117646089 -34891170 - ID4 SINE ID 0 83 2 3 1482 390 207 13 18 chr5 117646205 117646300 -34890959 + RSINE1 SINE B4 1 93 -199 3 1482 320 317 10 10 chr5 117646290 117646392 -34890867 + RSINE1 SINE B4 43 144 -21 3 1482 486 237 8 26 chr5 117646564 117646681 -34890578 + 5S rRNA rRNA 2 116 -5 3 1482 929 169 22 43 chr5 117646989 117647174 -34890085 + B3A SINE B2 1 181 -17 3 1482 24 32 0 0 chr5 117647191 117647222 -34890037 + AT_rich Low_complexity Low_complexity 1 31 0 3 1482 681 253 78 11 chr5 117647528 117647708 -34889551 + B4A SINE B4 101 292 0 3 1482 270 270 10 82 chr5 117648089 117648186 -34889073 - ID_B1 SINE B4 -117 107 18 3 1482 308 182 63 25 chr5 117648117 117648196 -34889063 - ID4_ SINE ID 0 83 2 3 1482 248 243 0 51 chr5 117648389 117648467 -34888792 - L1M2 LINE L1 -545 5752 5679 3 1482 609 233 45 8 chr5 117648480 117648653 -34888606 - B3 SINE B2 -1 197 42 3 1482 412 160 42 109 chr5 117649609 117649728 -34887531 + B1_Mur4 SINE Alu 6 116 -34 3 1482 426 300 70 14 chr5 117650464 117650606 -34886653 - RSINE1 SINE B4 -8 157 8 3 1482 256 24 0 47 chr5 117650614 117650657 -34886602 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 1482 1186 64 0 0 chr5 117650659 117650799 -34886460 - B1_Mus2 SINE Alu -6 141 2 3 1482 736 229 175 0 chr5 117650823 117651006 -34886253 - B3 SINE B2 0 216 2 3 1482 930 270 62 18 chr5 117651348 117651623 -34885636 - B4A SINE B4 -5 287 1 3 1482 270 316 50 50 chr5 117651896 117652056 -34885203 + Tigger15a DNA TcMar 168 327 -388 3 1482 261 375 42 0 chr5 117652238 117652358 -34884901 + Tigger5 DNA MER2_type 40 164 -2242 3 1482 321 303 37 96 chr5 117652467 117652602 -34884657 - MT2B LTR ERVL -300 301 175 3 1482 687 194 85 8 chr5 117652482 117652612 -34884647 - B1_Mur2 SINE Alu -8 141 2 3 1482 456 292 35 115 chr5 117652612 117652656 -34884603 - ID_B1 SINE B4 -8 216 57 3 1482 615 165 24 6 chr5 117653008 117653173 -34884086 + (TTGG)n Simple_repeat Simple_repeat 2 169 0 3 1482 671 175 169 0 chr5 117653355 117653509 -34883750 + B3A SINE B2 1 180 -18 3 1482 586 255 28 0 chr5 117654633 117654778 -34882481 - B1F SINE Alu 0 149 1 3 1482 456 219 63 54 chr5 117654970 117655081 -34882178 + B3A SINE B2 63 174 -24 3 1482 784 194 30 0 chr5 117655402 117655536 -34881723 + B1_Mur3 SINE Alu 1 138 -11 3 1482 614 235 14 42 chr5 117655537 117655679 -34881580 + ID_B1 SINE B4 82 219 -5 3 1482 269 305 42 10 chr5 117656836 117656851 -34880408 - ID_B1 SINE B4 -125 99 1 3 1482 303 262 12 12 chr5 117656851 117656932 -34880327 - ID4 SINE ID -2 81 1 3 1482 392 288 7 67 chr5 117656936 117657085 -34880174 - B1F SINE Alu -8 141 2 4 1482 421 210 124 48 chr5 117657112 117657217 -34880042 + PB1D9 SINE Alu 1 113 -7 4 1482 191 125 0 24 chr5 117658353 117658394 -34878865 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 4 1482 882 167 0 0 chr5 117658400 117658580 -34878679 + CT-rich Low_complexity Low_complexity 1 180 0 4 1482 310 197 0 0 chr5 117658584 117658645 -34878614 - L1MA4 LINE L1 -393 5907 5847 4 1482 1571 198 23 89 chr5 117658655 117658726 -34878533 - ORR1D1 LTR MaLR -3 371 314 4 1482 945 162 201 0 chr5 117658726 117658905 -34878354 + B3 SINE B2 1 215 -1 4 1482 1571 198 23 89 chr5 117658905 117659227 -34878032 - ORR1D1 LTR MaLR -61 313 4 4 1482 370 246 14 0 chr5 117659358 117659427 -34877832 + B3A SINE B2 2 71 -127 4 1482 254 218 167 0 chr5 117660103 117660181 -34877078 + B3 SINE B2 1 91 -125 4 1482 749 168 0 8 chr5 117660181 117660430 -34876829 + (CA)n Simple_repeat Simple_repeat 1 246 0 4 1482 233 352 87 39 chr5 117660661 117660788 -34876471 - Tigger10 DNA Tigger -1365 478 346 4 1482 251 290 106 11 chr5 117660981 117661075 -34876184 + B4A SINE B4 3 105 -187 4 1482 189 0 0 0 chr5 117661075 117661096 -34876163 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 4 1482 2053 199 112 46 chr5 117661102 117661645 -34875614 - RMER1B Other Other -14 1052 474 4 1482 508 304 95 19 chr5 117661645 117661856 -34875403 + B4A SINE B4 62 288 -4 4 1482 331 308 17 0 chr5 117661860 117661980 -34875279 + (CA)n Simple_repeat Simple_repeat 1 122 0 4 1482 436 278 0 0 chr5 117662331 117662439 -34874820 - PB1D10 SINE Alu -9 108 1 4 1482 1203 177 14 23 chr5 117662656 117662876 -34874383 - ID_B1 SINE B4 0 224 7 4 1482 595 250 15 8 chr5 117663084 117663217 -34874042 - RSINE1 SINE B4 -21 144 11 4 1482 684 196 12 84 chr5 117663325 117663492 -34873767 - ORR1E LTR MaLR -204 155 1 4 1482 256 213 74 40 chr5 117664349 117664431 -34872828 - B1_Mur2 SINE Alu -1 148 39 4 1482 327 25 0 0 chr5 117664459 117664499 -34872760 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 4 1482 714 105 0 0 chr5 117664535 117664640 -34872619 + (TTTC)n Simple_repeat Simple_repeat 3 107 0 4 1482 827 144 8 0 chr5 117664650 117664782 -34872477 - B1_Mur3 SINE Alu -15 134 2 4 1482 856 199 71 52 chr5 117664803 117665015 -34872244 - B3 SINE B2 0 216 1 4 1482 327 203 0 0 chr5 117665591 117665665 -34871594 + (CA)n Simple_repeat Simple_repeat 2 75 0 4 1482 514 220 75 39 chr5 117665820 117665967 -34871292 - B1_Mur2 SINE Alu -1 148 1 4 1482 272 299 30 114 chr5 117665967 117665986 -34871273 - ID_B1 SINE B4 -2 222 71 4 1482 949 49 0 31 chr5 117666129 117666256 -34871003 + B1_Mus1 SINE Alu 26 148 0 4 1482 584 233 242 33 chr5 117666489 117666660 -34870599 + B4A SINE B4 3 222 -70 4 1482 891 136 7 26 chr5 117666660 117666811 -34870448 + B1_Mur3 SINE Alu 2 149 0 4 1482 584 233 242 33 chr5 117666811 117666879 -34870380 + B4A SINE B4 223 292 0 4 1482 536 210 13 13 chr5 117666882 117667041 -34870218 + (CA)n Simple_repeat Simple_repeat 2 160 0 4 1482 374 268 10 20 chr5 117667704 117667803 -34869456 - PB1D10 SINE Alu -19 98 1 4 1482 242 239 44 15 chr5 117667806 117667874 -34869385 + PB1D10 SINE Alu 48 117 0 4 1482 621 166 160 32 chr5 117668204 117668360 -34868899 + B3 SINE B2 28 203 -13 4 1482 503 335 128 8 chr5 117668429 117668664 -34868595 + B4A SINE B4 12 274 -18 4 1482 1002 211 104 15 chr5 117668739 117669009 -34868250 - RMER15 LTR ERVL -3 572 279 4 1482 299 235 193 34 chr5 117669017 117669136 -34868123 - RMER15 LTR ERVL -416 159 22 4 1482 1223 291 120 33 chr5 117669264 117669287 -34867972 - Lx9 LINE L1 -128 7516 7494 4 1482 2691 132 67 7 chr5 117669287 117669723 -34867536 - RMER4A LTR ERVK 0 466 5 4 1482 1223 291 120 33 chr5 117669723 117669744 -34867515 - Lx9 LINE L1 -151 7493 7460 4 1482 195 42 0 0 chr5 117669744 117669768 -34867491 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1482 1223 291 120 33 chr5 117669768 117670297 -34866962 - Lx9 LINE L1 -185 7459 6893 4 1482 229 293 0 58 chr5 117670291 117670378 -34866881 - Lx9 LINE L1 -868 6776 6695 4 1482 958 306 77 3 chr5 117670387 117670685 -34866574 - Lx9 LINE L1 -926 6718 6399 4 1482 350 236 120 20 chr5 117670687 117670844 -34866415 + L1_Rod LINE L1 4279 4461 -1679 4 1482 501 98 20 61 chr5 117670844 117670942 -34866317 + B3 SINE B2 3 96 -120 4 1482 573 15 0 0 chr5 117670950 117671016 -34866243 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 4 1482 528 215 107 49 chr5 117671016 117671179 -34866080 + L1_Mur1 LINE L1 4434 4612 -1274 4 1482 216 0 0 0 chr5 117671179 117671203 -34866056 + (TATG)n Simple_repeat Simple_repeat 4 27 0 4 1482 528 215 107 49 chr5 117671203 117671244 -34866015 + L1_Mur1 LINE L1 4613 4650 -1236 4 1482 306 254 161 74 chr5 117671688 117671837 -34865422 - RSINE1 SINE B4 -1 164 3 4 1482 344 209 47 0 chr5 117671898 117671984 -34865275 - Lx9 LINE L1 0 7644 7555 4 1482 357 259 105 113 chr5 117671990 117672238 -34865021 + HAL1b LINE L1 1591 1836 -173 4 1482 749 182 14 14 chr5 117672257 117672396 -34864863 - B1F2 SINE Alu 0 149 11 4 1482 954 189 42 16 chr5 117672797 117672829 -34864430 - B3A SINE B2 0 198 167 4 1482 414 0 0 0 chr5 117672829 117672875 -34864384 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1482 954 189 42 16 chr5 117672875 117673035 -34864224 - B3A SINE B2 -32 166 1 4 1482 621 302 38 34 chr5 117673121 117673385 -34863874 + L1MA6 LINE L1 5557 5821 -491 4 1482 458 271 136 0 chr5 117673391 117673509 -34863750 + ID_B1 SINE B4 82 215 -9 4 1482 290 336 13 95 chr5 117673823 117673981 -34863278 + L1MA6 LINE L1 5841 5985 -327 4 1482 548 227 5 46 chr5 117673995 117674153 -34863106 + RSINE1 SINE B4 1 140 -152 4 1482 710 221 7 41 chr5 117674378 117674524 -34862735 - B1_Mur1 SINE Alu -7 142 2 4 1482 1263 47 0 0 chr5 117674558 117674706 -34862553 + B1_Mus1 SINE Alu 1 148 0 4 1482 828 111 0 0 chr5 117674713 117674839 -34862420 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 4 1482 981 169 175 0 chr5 117674861 117675050 -34862209 + URR1A DNA MER1_type 5 226 0 4 1482 381 298 129 27 chr5 117675623 117675809 -34861450 - Lx8 LINE L1 -4 7469 7265 4 1482 458 241 118 52 chr5 117676025 117676178 -34861081 + RSINE1 SINE B4 3 165 0 4 1482 210 171 0 0 chr5 117676179 117676214 -34861045 + (CATA)n Simple_repeat Simple_repeat 2 36 0 4 1482 768 180 0 0 chr5 117676217 117676378 -34860881 + (CA)n Simple_repeat Simple_repeat 2 162 0 4 1482 333 260 87 0 chr5 117676382 117676486 -34860773 + HAL1-3A_ME LINE L1 1977 2089 -769 4 1482 881 87 167 0 chr5 117676524 117676650 -34860609 + B1_Mm SINE Alu 1 147 0 4 1482 746 186 0 48 chr5 117676785 117676932 -34860327 + B1_Mur2 SINE Alu 5 144 -5 4 1482 225 233 110 0 chr5 117677610 117677683 -34859576 - Arthur1B DNA Tip100 -450 775 695 4 1482 228 135 0 0 chr5 117677684 117677721 -34859538 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 4 1482 317 226 0 0 chr5 117677734 117677796 -34859463 + B4 SINE B4 116 177 -115 4 1482 485 252 8 8 chr5 117678293 117678413 -34858846 + B1F SINE Alu 1 120 -29 4 1482 538 165 354 0 chr5 117678431 117678589 -34858670 + B3 SINE B2 1 214 -2 4 1482 987 90 20 27 chr5 117678614 117678763 -34858496 + B1_Mur4 SINE Alu 1 148 -2 4 1482 354 260 87 0 chr5 117678924 117679028 -34858231 + B1F SINE Alu 32 144 -5 4 1482 295 233 14 0 chr5 117679055 117679128 -34858131 + ID4_ SINE ID 2 75 -8 4 1482 282 73 0 0 chr5 117679260 117679301 -34857958 + (TCTG)n Simple_repeat Simple_repeat 1 41 0 4 1482 479 242 23 31 chr5 117679318 117679446 -34857813 - RSINE1 SINE B4 -29 136 10 4 1482 1416 191 226 3 chr5 117679491 117679832 -34857427 - MTD LTR MaLR 0 419 3 4 1482 236 274 24 12 chr5 117679844 117679861 -34857398 - B4A SINE B4 -206 86 1 4 1482 436 103 15 0 chr5 117679861 117679929 -34857330 - B3A SINE B2 -129 69 1 4 1482 516 239 147 15 chr5 117680306 117680442 -34856817 + RSINE1 SINE B4 2 155 -10 4 1482 475 243 121 84 chr5 117680633 117680799 -34856460 - B3A SINE B2 0 198 27 4 1482 460 192 225 25 chr5 117680795 117680848 -34856411 - B2_Mm2 SINE B2 -2 193 129 4 1482 468 0 0 0 chr5 117680848 117680900 -34856359 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1482 494 165 76 4 chr5 117680900 117681006 -34856253 - B3 SINE B2 -67 128 2 4 1482 572 298 40 10 chr5 117682359 117682559 -34854700 + B3 SINE B2 10 215 -1 4 1482 297 206 14 14 chr5 117682575 117682644 -34854615 + ID4_ SINE ID 9 77 -6 4 1482 437 0 19 0 chr5 117683453 117683506 -34853753 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1482 734 228 18 53 chr5 117683573 117683744 -34853515 - RSINE1 SINE B4 0 165 1 4 1482 591 208 33 46 chr5 117684060 117684211 -34853048 + B1_Mur1 SINE Alu 1 149 0 4 1482 402 255 93 64 chr5 117684810 117684982 -34852277 + B4A SINE B4 116 292 0 4 1482 310 255 19 58 chr5 117685064 117685168 -34852091 + PB1D10 SINE Alu 1 100 -17 4 1482 641 260 0 13 chr5 117685473 117685629 -34851630 - RSINE1 SINE B4 -7 158 5 4 1482 330 149 25 58 chr5 117685666 117685800 -34851459 - B1_Mm SINE Alu -9 140 19 4 1482 199 104 42 0 chr5 117686073 117686121 -34851138 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 4 1482 1233 35 7 0 chr5 117686128 117686273 -34850986 - B1_Mus2 SINE Alu 0 147 2 4 1482 1408 94 5 10 chr5 117686275 117686468 -34850791 - B2_Mm1t SINE B2 -1 192 1 4 1482 442 226 56 19 chr5 117686548 117686656 -34850603 + PB1D9 SINE Alu 1 112 -8 4 1482 533 228 147 0 chr5 117686846 117686982 -34850277 + RSINE1 SINE B4 2 157 -8 4 1482 189 154 0 0 chr5 117686990 117687029 -34850230 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1482 759 137 0 0 chr5 117687265 117687389 -34849870 + (TTTC)n Simple_repeat Simple_repeat 1 124 0 4 1482 941 120 0 0 chr5 117687389 117687531 -34849728 - B1_Mus1 SINE Alu 0 148 7 4 1482 250 316 45 16 chr5 117687717 117687733 -34849526 - B4 SINE B4 -67 225 140 4 1482 519 220 36 18 chr5 117687733 117687844 -34849415 - PB1D10 SINE Alu 0 117 5 4 1482 4295 37 2 8 chr5 117688104 117688616 -34848643 + L1Md_F2 LINE L1 6074 6582 0 5 1482 219 274 105 23 chr5 117688895 117688981 -34848278 - PB1D9 SINE Alu -12 108 16 5 1482 377 289 0 0 chr5 117689245 117689342 -34847917 + MER3 DNA MER1_type 113 209 0 5 1482 444 219 180 0 chr5 117689405 117689533 -34847726 + RSINE1 SINE B4 4 154 -11 5 1482 312 27 0 0 chr5 117689541 117689578 -34847681 + (CA)n Simple_repeat Simple_repeat 2 38 0 5 1482 21 57 0 0 chr5 117689796 117689831 -34847428 + AT_rich Low_complexity Low_complexity 1 35 0 5 1482 200 206 0 56 chr5 117691249 117691321 -34845938 + CT-rich Low_complexity Low_complexity 3 70 0 5 1482 228 170 0 0 chr5 117691471 117691524 -34845735 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1482 279 0 0 0 chr5 117691649 117691680 -34845579 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1482 405 0 0 0 chr5 117692123 117692168 -34845091 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1482 198 0 0 0 chr5 117692438 117692460 -34844799 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 5 1482 186 43 0 0 chr5 117692479 117692502 -34844757 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 5 1482 562 257 145 86 chr5 117695148 117695369 -34841890 + B4A SINE B4 57 290 -2 5 1482 367 301 19 10 chr5 117695525 117695629 -34841630 + PB1D10 SINE Alu 1 105 -12 5 1482 763 175 66 0 chr5 117696442 117696579 -34840680 + B1_Mur1 SINE Alu 3 148 -1 5 1482 181 303 97 39 chr5 117696739 117696842 -34840417 - MIRc SINE MIR -70 198 90 5 1482 324 286 114 80 chr5 117697095 117697141 -34840118 + ID_B1 SINE B4 41 219 -3 5 1482 389 219 150 63 chr5 117697141 117697268 -34839991 + B1_Mur1 SINE Alu 7 144 -5 5 1482 808 307 47 12 chr5 117697420 117697677 -34839582 + B4 SINE B4 3 268 -24 5 1482 234 0 0 0 chr5 117698057 117698083 -34839176 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1482 763 243 138 54 chr5 117698526 117698787 -34838472 + B4A SINE B4 2 284 -8 5 1482 432 246 9 18 chr5 117699057 117699169 -34838090 + PB1D7 SINE Alu 10 120 0 5 1482 220 327 162 26 chr5 117699169 117699211 -34838048 + B4 SINE B4 95 269 -23 5 1482 224 291 24 37 chr5 117699321 117699403 -34837856 + PB1D10 SINE Alu 1 81 -36 5 1482 996 145 171 0 chr5 117699682 117699875 -34837384 - URR1A DNA MER1_type 0 226 1 5 1482 252 0 0 0 chr5 117700544 117700572 -34836687 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1482 330 26 0 0 chr5 117700572 117700610 -34836649 + (GA)n Simple_repeat Simple_repeat 1 39 0 5 1482 218 175 0 0 chr5 117700827 117700867 -34836392 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 5 1482 198 0 0 0 chr5 117701160 117701182 -34836077 + (CA)n Simple_repeat Simple_repeat 1 22 0 5 1482 224 307 13 26 chr5 117701566 117701643 -34835616 + ID_B1 SINE B4 84 159 -65 5 1482 211 289 31 62 chr5 117701570 117701666 -34835593 + PB1D10 SINE Alu 9 101 -16 5 1482 457 305 2 60 chr5 117701763 117701923 -34835336 + B4 SINE B4 89 243 -49 5 1482 443 298 153 35 chr5 117701923 117702184 -34835075 + B4A SINE B4 1 292 0 5 1482 455 344 25 44 chr5 117702184 117702227 -34835032 + B4A SINE B4 244 287 -5 5 1483 188 234 21 0 chr5 117702890 117702937 -34834322 - MER5A DNA MER1_type -124 65 18 5 1483 1173 43 7 0 chr5 117703036 117703177 -34834082 - B1_Mus1 SINE Alu -2 146 5 5 1483 339 152 0 132 chr5 117705128 117705204 -34832055 + ID4_ SINE ID 5 70 -13 5 1483 202 303 15 0 chr5 117706106 117706172 -34831087 + L2b LINE L2 3272 3338 -37 5 1483 244 182 53 35 chr5 117706756 117706813 -34830446 + 4.5SRNA scRNA scRNA 31 88 -6 5 1483 339 211 42 0 chr5 117706762 117706833 -34830426 + PB1D10 SINE Alu 37 110 -7 5 1483 1224 239 22 11 chr5 117706843 117707118 -34830141 + B4A SINE B4 1 278 -14 5 1483 258 116 0 0 chr5 117707122 117707165 -34830094 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1483 373 217 43 0 chr5 117707441 117707533 -34829726 - PB1D10 SINE Alu 0 117 22 5 1483 450 0 0 0 chr5 117707629 117707679 -34829580 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 5 1483 219 259 0 53 chr5 117708173 117708230 -34829029 + ID4_ SINE ID 24 77 -6 5 1483 274 333 12 0 chr5 117708182 117708263 -34828996 + ID_B1 SINE B4 31 112 -112 5 1483 208 341 11 22 chr5 117708651 117708741 -34828518 + (CATG)n Simple_repeat Simple_repeat 2 90 0 5 1483 227 296 0 0 chr5 117708670 117708724 -34828535 + (CACG)n Simple_repeat Simple_repeat 4 57 0 5 1483 388 188 0 0 chr5 117708932 117709001 -34828258 + B3A SINE B2 9 77 -121 5 1483 574 167 9 44 chr5 117709570 117709683 -34827576 + PB1D10 SINE Alu 1 109 -8 5 1483 180 284 0 0 chr5 117709753 117709848 -34827411 + C-rich Low_complexity Low_complexity 5 99 0 5 1483 432 112 0 6 chr5 117710118 117710195 -34827064 + B1_Mur2 SINE Alu 38 112 -37 5 1483 513 0 0 0 chr5 117710206 117710263 -34826996 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 5 1483 337 289 61 9 chr5 117710346 117710461 -34826798 + PB1 SINE Alu 5 125 -2 5 1483 894 191 39 11 chr5 117711067 117711247 -34826012 + B3 SINE B2 1 185 -31 5 1483 261 0 0 0 chr5 117711319 117711348 -34825911 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1483 221 59 29 0 chr5 117711473 117711507 -34825752 - B3A SINE B2 -163 35 1 5 1483 368 333 19 38 chr5 117711876 117712035 -34825224 + ID_B1 SINE B4 69 224 0 5 1483 645 200 15 15 chr5 117711905 117712037 -34825222 + B1_Mur1 SINE Alu 18 149 0 5 1483 406 209 29 7 chr5 117712165 117712305 -34824954 + CT-rich Low_complexity Low_complexity 1 143 0 5 1483 454 164 0 0 chr5 117712866 117712939 -34824320 + ID4 SINE ID 5 77 -6 5 1483 216 190 0 23 chr5 117712939 117712982 -34824277 + GA-rich Low_complexity Low_complexity 1 42 0 5 1483 1068 147 152 0 chr5 117714074 117714258 -34823001 + B3 SINE B2 1 212 -4 5 1483 867 148 11 26 chr5 117714303 117714477 -34822782 + URR1A DNA MER1_type 40 226 0 5 1483 312 288 23 70 chr5 117714477 117714503 -34822756 - CYRA11_Mm Unknown Y-chromosome -450 167 150 5 1483 430 206 65 0 chr5 117714538 117714630 -34822629 + B1_Mur4 SINE Alu 42 139 -11 5 1483 387 0 0 0 chr5 117714631 117714674 -34822585 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 5 1483 723 81 0 0 chr5 117714674 117714773 -34822486 + (GGGA)n Simple_repeat Simple_repeat 3 101 0 5 1483 549 0 0 0 chr5 117714773 117714834 -34822425 + (CAAG)n Simple_repeat Simple_repeat 1 61 0 5 1483 211 130 0 98 chr5 117716377 117716428 -34820831 + G-rich Low_complexity Low_complexity 3 48 0 5 1483 189 74 0 0 chr5 117716562 117716589 -34820670 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 5 1483 255 290 14 0 chr5 117716989 117717058 -34820201 + GA-rich Low_complexity Low_complexity 1 70 0 5 1483 987 168 128 0 chr5 117718041 117718237 -34819022 + ID_B1 SINE B4 2 222 -2 5 1483 208 330 8 71 chr5 117718439 117718566 -34818693 - L2c LINE L2 0 3387 3269 5 1483 705 232 78 29 chr5 117719431 117719635 -34817624 - ID_B1 SINE B4 -8 216 3 5 1483 528 283 67 10 chr5 117720445 117720638 -34816621 + ID_B1 SINE B4 16 219 -5 5 1483 695 87 0 9 chr5 117721745 117721850 -34815409 + (GGAA)n Simple_repeat Simple_repeat 1 104 0 5 1483 889 204 6 0 chr5 117722605 117722762 -34814497 + B3A SINE B2 5 162 -36 5 1483 857 241 110 40 chr5 117722793 117723066 -34814193 + B4 SINE B4 1 292 0 5 1483 213 365 27 0 chr5 117723066 117723140 -34814119 + (CACG)n Simple_repeat Simple_repeat 3 78 0 5 1483 824 250 26 66 chr5 117723149 117723453 -34813806 + B4A SINE B4 1 292 0 5 1483 1046 7 46 0 chr5 117723456 117723607 -34813652 + (TG)n Simple_repeat Simple_repeat 2 159 0 5 1483 180 125 0 0 chr5 117723866 117723898 -34813361 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1483 841 140 11 17 chr5 117723942 117724123 -34813136 + CT-rich Low_complexity Low_complexity 1 180 0 5 1483 21 0 0 0 chr5 117724498 117724519 -34812740 + AT_rich Low_complexity Low_complexity 1 21 0 5 1483 198 0 0 0 chr5 117725729 117725751 -34811508 + (T)n Simple_repeat Simple_repeat 1 22 0 5 1483 404 223 8 134 chr5 117725825 117725944 -34811315 - B1_Mur2 SINE Alu -44 105 2 5 1483 496 174 91 9 chr5 117726320 117726430 -34810829 + PB1D9 SINE Alu 1 119 -1 5 1483 646 178 430 28 chr5 117726436 117726650 -34810609 + RMER1C Other Other 1043 1342 0 5 1483 332 151 0 54 chr5 117726665 117726721 -34810538 + B1_Mur4 SINE Alu 3 55 -95 5 1483 318 149 26 130 chr5 117726721 117726737 -34810522 + ID_B1 SINE B4 84 147 -77 5 1483 258 229 55 78 chr5 117726752 117726880 -34810379 + RLTR25B LTR ERVK 397 521 -507 5 1483 788 85 0 0 chr5 117726796 117726902 -34810357 + B1_Mus2 SINE Alu 42 147 0 5 1483 667 290 52 0 chr5 117727246 117727401 -34809858 + RSINE1 SINE B4 3 165 0 5 1483 363 44 0 0 chr5 117727896 117727941 -34809318 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1483 350 262 11 87 chr5 117727953 117728045 -34809214 + B3A SINE B2 87 171 -27 5 1483 357 24 0 0 chr5 117728048 117728090 -34809169 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1483 23 0 0 0 chr5 117728090 117728113 -34809146 + AT_rich Low_complexity Low_complexity 1 23 0 5 1483 1518 72 0 5 chr5 117728123 117728319 -34808940 + B2_Mm2 SINE B2 1 195 0 5 1483 260 300 225 17 chr5 117728355 117728528 -34808731 + ID_B1 SINE B4 2 210 -14 5 1483 441 0 0 0 chr5 117728530 117728579 -34808680 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1483 1160 0 15 0 chr5 117728579 117728714 -34808545 + (GGAAA)n Simple_repeat Simple_repeat 2 138 0 6 1483 395 284 84 39 chr5 117729381 117729535 -34807724 + RSINE1 SINE B4 3 163 -2 6 1483 1084 236 100 57 chr5 117729616 117729917 -34807342 + MTE2b LTR MaLR 28 341 -38 6 1483 809 153 7 21 chr5 117730053 117730193 -34807066 - B1_Mur3 SINE Alu -1 148 11 6 1483 679 88 281 104 chr5 117730201 117730365 -34806894 - B2_Mm2 SINE B2 0 195 3 6 1483 593 261 6 65 chr5 117730385 117730553 -34806706 - RSINE1 SINE B4 0 165 8 6 1483 425 246 138 0 chr5 117731051 117731181 -34806078 + RSINE1 SINE B4 2 149 -16 6 1483 491 234 145 31 chr5 117731275 117731434 -34805825 + B3A SINE B2 3 179 -19 6 1483 391 168 291 34 chr5 117731444 117731561 -34805698 - B1_Mus2 SINE Alu 0 147 1 6 1483 816 129 106 0 chr5 117731918 117732050 -34805209 + B1_Mus2 SINE Alu 2 147 0 6 1483 238 224 0 0 chr5 117732067 117732116 -34805143 - RSINE1 SINE B4 -52 113 65 6 1483 256 311 0 0 chr5 117732129 117732190 -34805069 - B1F SINE Alu -86 63 3 6 1483 1230 61 0 0 chr5 117732251 117732398 -34804861 - B1_Mm SINE Alu 0 147 1 6 1483 594 183 26 0 chr5 117732399 117732514 -34804745 - PB1D9 SINE Alu -2 118 1 6 1483 518 258 131 45 chr5 117733533 117733732 -34803527 + ID_B1 SINE B4 1 216 -8 6 1483 1126 78 28 0 chr5 117733772 117733914 -34803345 + B1_Mm SINE Alu 2 147 0 6 1483 304 318 83 57 chr5 117734115 117734345 -34802914 + L1M5 LINE L1 5625 5860 -302 6 1483 251 192 0 0 chr5 117735084 117735136 -34802123 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1483 225 253 66 13 chr5 117735972 117736048 -34801211 + ID4_ SINE ID 1 80 -3 6 1483 410 282 104 28 chr5 117736469 117736651 -34800608 + B3A SINE B2 1 196 -2 6 1483 21 0 0 0 chr5 117736679 117736700 -34800559 + AT_rich Low_complexity Low_complexity 1 21 0 6 1483 614 150 31 31 chr5 117736708 117736846 -34800413 + PB1D9 SINE Alu 1 142 -6 6 1483 876 133 28 7 chr5 117738611 117738755 -34798504 - B1_Mur3 SINE Alu -2 147 1 6 1483 264 281 29 59 chr5 117738812 117738914 -34798345 - RSINE1 SINE B4 -12 153 55 6 1483 1022 134 10 46 chr5 117738917 117739113 -34798146 + RMER17C-int LTR ERVK 2627 2815 -423 6 1483 894 130 191 0 chr5 117739187 117739349 -34797910 + B2_Mm1t SINE B2 1 193 0 6 1483 1409 85 16 0 chr5 117739353 117739542 -34797717 + B2_Mm2 SINE B2 1 192 -3 6 1483 1669 26 5 0 chr5 117739544 117739735 -34797524 + B2_Mm1a SINE B2 2 193 0 6 1483 639 213 54 54 chr5 117739763 117739912 -34797347 + B1_Mur1 SINE Alu 1 149 0 6 1483 1231 58 122 6 chr5 117739969 117740141 -34797118 + B2_Mm2 SINE B2 2 193 -2 6 1483 703 269 13 20 chr5 117740154 117740306 -34796953 + B3A SINE B2 1 151 -47 6 1483 216 0 0 0 chr5 117740308 117740332 -34796927 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1483 357 158 27 8 chr5 117740342 117740445 -34796814 - B2_Mm2 SINE B2 -4 191 47 6 1483 1313 58 53 0 chr5 117740494 117740665 -34796594 - B2_Mm1t SINE B2 -12 181 2 6 1483 215 411 0 0 chr5 117740682 117740772 -34796487 + PB1D10 SINE Alu 1 90 -27 6 1483 222 37 0 0 chr5 117740824 117740851 -34796408 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1483 1163 65 0 0 chr5 117740851 117740989 -34796270 - B1_Mus1 SINE Alu -8 140 3 6 1483 631 309 5 62 chr5 117741023 117741216 -34796043 - B3A SINE B2 -16 182 1 6 1483 270 275 14 42 chr5 117741479 117741551 -34795708 - B3 SINE B2 -42 174 105 6 1483 227 191 61 45 chr5 117741705 117741771 -34795488 - ORR1E LTR MaLR 0 359 293 6 1483 351 316 29 35 chr5 117741758 117741932 -34795327 - RMER17C LTR ERVK -62 348 176 6 1483 583 307 14 84 chr5 117742080 117742315 -34794944 + B3A SINE B2 2 216 0 6 1483 247 281 122 0 chr5 117742353 117742435 -34794824 + ID_B1 SINE B4 72 163 -61 6 1483 243 0 0 0 chr5 117742537 117742564 -34794695 + (ATTG)n Simple_repeat Simple_repeat 3 29 0 6 1483 495 0 0 0 chr5 117742942 117742997 -34794262 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1483 480 216 0 0 chr5 117743100 117743188 -34794071 - ID_B1 SINE B4 -3 221 134 6 1483 1066 137 120 0 chr5 117743271 117743446 -34793813 + URR1A DNA MER1_type 3 198 -28 6 1483 484 268 8 31 chr5 117743463 117743590 -34793669 + MLT1E1A LTR MaLR 541 664 -16 6 1483 1421 71 22 0 chr5 117743737 117743921 -34793338 - B2_Mm2 SINE B2 -6 189 2 6 1483 327 196 17 186 chr5 117744439 117744564 -34792695 - B1_Mur1 SINE Alu 0 149 9 6 1483 470 274 86 0 chr5 117744638 117744755 -34792504 - RSINE1 SINE B4 -37 128 2 6 1483 408 275 54 18 chr5 117744774 117744885 -34792374 - PB1D10 SINE Alu 0 117 3 6 1483 307 165 182 20 chr5 117745362 117745461 -34791798 - URR1B DNA MER1_type -6 219 105 6 1483 3676 46 5 2 chr5 117745461 117745896 -34791363 - RLTR10C LTR ERVK 0 436 1 6 1483 43696 12 7 1 chr5 117745896 117750966 -34786293 - MMERVK10C-int LTR ERVK 0 7581 1885 6 1483 312 155 17 0 chr5 117750973 117751031 -34786228 - MMERVK10C-int LTR ERVK -5627 1779 1721 6 1483 703 200 231 43 chr5 117751031 117751401 -34785858 - MMERVK10C-int LTR ERVK -4795 611 312 6 1483 813 151 4 180 chr5 117751489 117751756 -34785503 - MMERVK10C-int LTR ERVK -6633 948 729 6 1483 787 126 0 0 chr5 117751754 117751873 -34785386 - MMERVK10C-int LTR ERVK -7238 343 225 6 1483 225 225 0 0 chr5 117751873 117751913 -34785346 - RLTR27 LTR ERVK -34 275 236 6 1483 1567 16 0 0 chr5 117751913 117752097 -34785162 - MMERVK10C-int LTR ERVK -7397 184 1 6 1483 3662 48 5 2 chr5 117752097 117752532 -34784727 - RLTR10C LTR ERVK 0 436 1 6 1483 767 60 10 0 chr5 117752558 117752658 -34784601 - B1_Mus2 SINE Alu -1 146 46 6 1483 323 149 70 56 chr5 117752599 117752670 -34784589 - RLTR25B LTR ERVK -519 509 438 6 1483 601 208 125 0 chr5 117752800 117752920 -34784339 + B1_Mur3 SINE Alu 1 135 -14 6 1483 227 213 148 0 chr5 117752920 117752981 -34784278 + ZP3AR Satellite Satellite 17 86 -126 6 1483 355 214 0 0 chr5 117752944 117753014 -34784245 + ID4 SINE ID 8 77 -6 6 1483 652 266 19 87 chr5 117753043 117753249 -34784010 - ID_B1 SINE B4 -21 203 12 6 1483 271 65 43 0 chr5 117753529 117753575 -34783684 + (TTG)n Simple_repeat Simple_repeat 2 49 0 6 1483 403 225 162 0 chr5 117753582 117753693 -34783566 + MER21B LTR ERV1 114 242 -621 6 1483 408 273 68 8 chr5 117754213 117754346 -34782913 + RSINE1 SINE B4 2 142 -23 6 1483 225 89 31 125 chr5 117754375 117754439 -34782820 + MT2B LTR ERVL 207 264 -337 6 1483 482 108 27 0 chr5 117754386 117754460 -34782799 + B1_Mus2 SINE Alu 59 134 -13 6 1483 224 30 30 0 chr5 117754460 117754493 -34782766 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 6 1483 1288 92 12 0 chr5 117754504 117754677 -34782582 + B2_Mm2 SINE B2 2 176 -19 6 1483 558 263 68 11 chr5 117755297 117755474 -34781785 + MTD LTR MaLR 3 189 -230 6 1483 333 270 122 40 chr5 117755498 117755637 -34781622 + MTD LTR MaLR 257 419 0 6 1483 278 268 48 12 chr5 117755653 117755736 -34781523 - PB1D10 SINE Alu -2 115 30 6 1483 543 233 13 131 chr5 117755901 117756093 -34781166 - B3A SINE B2 0 193 5 6 1483 200 156 22 22 chr5 117756160 117756206 -34781053 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 6 1483 514 234 71 24 chr5 117756209 117756336 -34780923 - B1_Mus2 SINE Alu -5 142 10 6 1483 428 209 57 73 chr5 117756354 117756478 -34780781 - PB1 SINE Alu -4 123 2 6 1483 833 134 23 23 chr5 117756504 117756680 -34780579 + GA-rich Low_complexity Low_complexity 3 178 0 6 1483 234 138 34 17 chr5 117756686 117756745 -34780514 + G-rich Low_complexity Low_complexity 5 64 0 6 1483 902 194 42 16 chr5 117756927 117757116 -34780143 + B2_Mm2 SINE B2 2 195 0 6 1483 295 236 11 11 chr5 117757116 117757210 -34780049 + GA-rich Low_complexity Low_complexity 3 96 0 6 1483 229 194 345 64 chr5 117757237 117757347 -34779912 + B3A SINE B2 11 151 -47 6 1483 180 0 0 0 chr5 117757351 117757371 -34779888 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1483 26 0 0 0 chr5 117757374 117757400 -34779859 + AT_rich Low_complexity Low_complexity 1 26 0 6 1483 331 227 30 40 chr5 117757477 117757578 -34779681 + MIR SINE MIR 80 179 -83 6 1483 364 294 103 0 chr5 117757813 117757939 -34779320 + ID_B1 SINE B4 62 200 -24 6 1483 801 36 36 0 chr5 117758103 117758213 -34779046 + B1_Mm SINE Alu 34 147 0 6 1483 494 191 89 18 chr5 117758465 117758616 -34778643 - B3 SINE B2 -19 176 6 6 1483 1219 68 0 0 chr5 117758643 117758791 -34778468 - B1_Mus1 SINE Alu 0 148 1 6 1483 1184 75 0 0 chr5 117758806 117758953 -34778306 - B1_Mm SINE Alu 0 147 1 6 1483 592 172 388 7 chr5 117758971 117759123 -34778136 - B3 SINE B2 -6 210 1 6 1483 682 160 8 53 chr5 117759190 117759322 -34777937 - B1_Mur4 SINE Alu 0 150 25 6 1483 2855 192 100 68 chr5 117759558 117760475 -34776784 - RLTR42-int LTR ERVK -568 4954 4008 6 1483 2805 198 73 32 chr5 117760550 117761211 -34776048 - RLTR42-int LTR ERVK -2547 2975 2288 6 1483 969 47 124 0 chr5 117761227 117761356 -34775903 - B1_Mus1 SINE Alu -2 146 2 6 1483 1363 88 5 10 chr5 117761390 117761585 -34775674 - B2_Mm2 SINE B2 0 195 2 6 1483 216 67 0 0 chr5 117761884 117761914 -34775345 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1483 512 215 122 8 chr5 117761915 117762046 -34775213 + B1F2 SINE Alu 1 146 -3 6 1483 21 57 0 0 chr5 117762521 117762556 -34774703 + AT_rich Low_complexity Low_complexity 1 35 0 6 1483 1742 16 0 0 chr5 117762649 117762841 -34774418 - B2_Mm1a SINE B2 0 193 2 6 1483 21 57 0 0 chr5 117762844 117762879 -34774380 + AT_rich Low_complexity Low_complexity 1 35 0 6 1483 1492 228 56 21 chr5 117763030 117763456 -34773803 - RLTR42-int LTR ERVK -4124 1398 958 6 1483 421 68 0 0 chr5 117764486 117764545 -34772714 + B1_Mm SINE Alu 89 147 0 6 1483 210 71 21 106 chr5 117764897 117764944 -34772315 - ID SINE ID -180 44 2 6 1483 224 114 0 43 chr5 117765107 117765153 -34772106 + CT-rich Low_complexity Low_complexity 2 45 0 7 1483 210 147 0 0 chr5 117765598 117765632 -34771627 + (CAG)n Simple_repeat Simple_repeat 3 36 0 7 1483 224 291 0 25 chr5 117765866 117765947 -34771312 + ID4 SINE ID 4 82 -1 7 1483 1207 50 0 0 chr5 117766186 117766326 -34770933 - B1_Mus1 SINE Alu -8 140 1 7 1483 997 42 0 0 chr5 117766334 117766454 -34770805 + MTB_Mm LTR MaLR 288 407 0 7 1483 2077 150 14 16 chr5 117766454 117766819 -34770440 - RMER15 LTR ERVL -206 369 6 7 1483 1284 80 62 0 chr5 117766956 117767132 -34770127 + B2_Mm2 SINE B2 2 188 -7 7 1483 645 278 20 44 chr5 117767375 117767578 -34769681 - B3A SINE B2 0 198 1 7 1483 270 276 130 20 chr5 117768220 117768320 -34768939 + PB1D7 SINE Alu 1 111 -9 7 1483 222 37 0 0 chr5 117768478 117768505 -34768754 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1483 254 203 130 0 chr5 117768545 117768614 -34768645 - ID4 SINE ID -3 80 3 7 1483 21 36 0 0 chr5 117770021 117770049 -34767210 + GC_rich Low_complexity Low_complexity 1 28 0 7 1483 347 276 20 0 chr5 117772092 117772190 -34765069 - PB1D10 SINE Alu -17 100 1 7 1483 1536 53 11 0 chr5 117772199 117772389 -34764870 - B2_Mm1t SINE B2 -1 192 1 7 1483 264 146 0 0 chr5 117772673 117772721 -34764538 - L1MB7 LINE L1 -8 6176 6129 7 1483 663 271 109 21 chr5 117772721 117772913 -34764346 + ID_B1 SINE B4 2 210 -14 7 1483 504 298 0 85 chr5 117772954 117773119 -34764140 + RSINE1 SINE B4 3 153 -12 7 1483 188 352 151 32 chr5 117773454 117773765 -34763494 + L2b LINE L2 3012 3359 -16 7 1483 268 279 25 157 chr5 117773929 117774133 -34763126 - MLT1H LTR MaLR -170 379 203 7 1483 360 0 0 0 chr5 117774135 117774175 -34763084 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1483 1078 248 112 60 chr5 117774179 117774510 -34762749 - ORR1E LTR MaLR -11 348 1 7 1483 410 224 140 0 chr5 117774537 117774644 -34762615 + ID_B1 SINE B4 4 125 -99 7 1483 325 269 58 42 chr5 117774615 117774650 -34762609 + ID SINE ID 47 83 -141 7 1483 252 239 94 42 chr5 117774650 117774746 -34762513 + PB1D10 SINE Alu 1 101 -16 7 1483 290 196 96 37 chr5 117775183 117775248 -34762011 + PB1 SINE Alu 59 122 -2 7 1483 351 77 19 0 chr5 117775248 117775300 -34761959 + ID_B1 SINE B4 172 224 0 7 1483 264 122 0 0 chr5 117775310 117775351 -34761908 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 7 1483 439 174 32 0 chr5 117776055 117776153 -34761106 - B1_Mur2 SINE Alu -13 107 6 7 1483 295 256 4 92 chr5 117776076 117776199 -34761060 - MT2B LTR ERVL -345 239 125 7 1483 501 266 0 9 chr5 117776320 117776430 -34760829 + ID_B1 SINE B4 109 217 -7 7 1483 227 152 130 0 chr5 117776464 117776510 -34760749 - B1F SINE Alu -81 68 17 7 1483 525 207 117 58 chr5 117776753 117776907 -34760352 + ID_B1 SINE B4 45 207 -17 7 1483 207 0 0 0 chr5 117776908 117776931 -34760328 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1483 1051 61 8 0 chr5 117776934 117777066 -34760193 - B1_Mus1 SINE Alu -14 134 2 7 1483 398 220 96 159 chr5 117777069 117777226 -34760033 - B3 SINE B2 0 195 49 7 1483 315 0 0 0 chr5 117777264 117777299 -34759960 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1483 441 0 0 0 chr5 117777299 117777347 -34759912 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 1483 812 159 0 0 chr5 117777347 117777473 -34759786 - B1_Mus1 SINE Alu -21 127 2 7 1483 1460 78 0 20 chr5 117777504 117777701 -34759558 + B2_Mm2 SINE B2 2 194 -1 7 1483 703 255 72 34 chr5 117777705 117777912 -34759347 + B3 SINE B2 1 215 -1 7 1483 1138 88 0 0 chr5 117778106 117778253 -34759006 - B1_Mus1 SINE Alu 0 148 2 7 1483 430 225 0 0 chr5 117778896 117778985 -34758274 + ID_B1 SINE B4 115 203 -21 7 1483 243 318 45 18 chr5 117778985 117779008 -34758251 + B1F SINE Alu 34 148 -1 7 1483 28 48 0 0 chr5 117779347 117779389 -34757870 + AT_rich Low_complexity Low_complexity 1 42 0 7 1483 541 211 0 26 chr5 117779396 117779513 -34757746 + B1_Mus1 SINE Alu 11 124 -24 7 1483 785 263 20 10 chr5 117779573 117779769 -34757490 - B3A SINE B2 0 198 1 7 1483 556 183 160 0 chr5 117779818 117779949 -34757310 - RSINE1 SINE B4 -10 155 4 7 1483 25 0 0 0 chr5 117779952 117779977 -34757282 + AT_rich Low_complexity Low_complexity 1 25 0 7 1483 1429 76 5 0 chr5 117780236 117780420 -34756839 - B2_Mm1t SINE B2 -7 186 2 7 1483 240 336 56 48 chr5 117780828 117780863 -34756396 + B4 SINE B4 58 183 -109 7 1483 392 247 0 11 chr5 117780863 117780953 -34756306 + PB1D10 SINE Alu 3 91 -26 7 1483 289 0 0 47 chr5 117781250 117781293 -34755966 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 7 1483 528 200 64 0 chr5 117781293 117781403 -34755856 - B1_Mur1 SINE Alu -11 138 22 7 1483 628 232 11 0 chr5 117781431 117781608 -34755651 + CT-rich Low_complexity Low_complexity 2 180 0 7 1483 767 207 0 11 chr5 117781628 117781809 -34755450 + CT-rich Low_complexity Low_complexity 2 180 0 7 1483 447 220 21 12 chr5 117781824 117782066 -34755193 + CT-rich Low_complexity Low_complexity 1 244 0 7 1483 258 221 0 81 chr5 117782236 117782310 -34754949 + ID4_ SINE ID 2 69 -14 7 1483 336 339 38 32 chr5 117782365 117782593 -34754666 - MIR SINE MIR -14 248 28 7 1483 746 214 22 27 chr5 117783035 117783218 -34754041 - B3A SINE B2 -16 182 1 7 1483 643 182 38 16 chr5 117783256 117783413 -34753846 - B3 SINE B2 -14 181 27 7 1483 1500 58 11 0 chr5 117783417 117783607 -34753652 - B2_Mm1a SINE B2 0 193 2 7 1483 520 119 67 29 chr5 117783660 117783764 -34753495 - B1_Mur2 SINE Alu 0 149 42 7 1483 507 260 53 37 chr5 117783787 117783975 -34753284 - B3A SINE B2 -6 192 2 7 1483 815 196 118 16 chr5 117784041 117784228 -34753031 + ID_B1 SINE B4 4 209 -15 7 1483 858 70 0 0 chr5 117784254 117784368 -34752891 + (CA)n Simple_repeat Simple_repeat 1 114 0 7 1483 1161 95 94 6 chr5 117784380 117784550 -34752709 - B2_Mm2 SINE B2 -8 187 3 7 1483 215 246 8 41 chr5 117785402 117785525 -34751734 + (TTTA)n Simple_repeat Simple_repeat 2 120 0 7 1483 405 310 34 8 chr5 117785594 117785711 -34751548 + PB1D7 SINE Alu 1 120 0 7 1483 207 100 0 0 chr5 117785711 117785741 -34751518 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1483 1124 280 28 0 chr5 117785758 117786040 -34751219 + B4 SINE B4 1 290 -2 7 1483 294 330 10 0 chr5 117786044 117786141 -34751118 + (CA)n Simple_repeat Simple_repeat 1 98 0 7 1483 334 341 87 26 chr5 117786193 117786473 -34750786 - ORR1E LTR MaLR -9 370 56 7 1483 1316 126 16 0 chr5 117786609 117786800 -34750459 - B2_Mm2 SINE B2 -1 194 1 7 1483 382 208 14 0 chr5 117786855 117786927 -34750332 - RSINE1 SINE B4 -91 74 2 7 1483 973 194 70 0 chr5 117786947 117787148 -34750111 - B3 SINE B2 0 216 2 7 1483 859 150 13 13 chr5 117787204 117787353 -34749906 - B1_Mur4 SINE Alu -1 149 1 7 1483 356 311 16 16 chr5 117787396 117787517 -34749742 - RSINE1 SINE B4 -33 132 12 7 1483 652 276 31 95 chr5 117787539 117787795 -34749464 - ID_B1 SINE B4 -46 246 2 7 1483 400 228 20 0 chr5 117787875 117787976 -34749283 + (CAGA)n Simple_repeat Simple_repeat 4 106 0 7 1483 340 236 6 6 chr5 117787979 117788158 -34749101 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1483 939 82 104 0 chr5 117788922 117789056 -34748203 + B1_Mus1 SINE Alu 1 148 0 7 1483 350 280 66 95 chr5 117789078 117789302 -34747957 - MLT1F LTR MaLR -204 344 132 7 1483 308 333 24 0 chr5 117789538 117789622 -34747637 - PB1 SINE Alu -21 106 21 7 1483 712 228 31 6 chr5 117789861 117790024 -34747235 - B3 SINE B2 -11 205 39 7 1483 1959 157 74 40 chr5 117790033 117790357 -34746902 - MTC LTR MaLR 0 421 95 7 1483 3086 64 17 25 chr5 117790357 117790551 -34746708 + MTB LTR MaLR 1 195 -205 7 1483 1408 68 45 0 chr5 117790551 117790727 -34746532 + B2_Mm2 SINE B2 1 184 -11 7 1483 180 0 0 0 chr5 117790727 117790747 -34746512 + (GA)n Simple_repeat Simple_repeat 2 21 0 7 1483 3086 64 17 25 chr5 117790747 117790954 -34746305 + MTB LTR MaLR 196 399 -1 7 1483 1959 157 74 40 chr5 117790954 117791034 -34746225 - MTC LTR MaLR -327 94 3 7 1483 202 219 0 24 chr5 117791403 117791445 -34745814 + CT-rich Low_complexity Low_complexity 2 42 0 7 1483 688 178 325 0 chr5 117791569 117791738 -34745521 + URR1A DNA MER1_type 3 226 0 7 1483 419 283 83 0 chr5 117791868 117792013 -34745246 - RMER15 LTR ERVL -16 559 403 7 1483 289 310 35 9 chr5 117792229 117792343 -34744916 + MLT1D LTR MaLR 131 247 -258 7 1483 666 197 0 40 chr5 117792383 117792531 -34744728 + B1F2 SINE Alu 7 148 -1 7 1483 289 270 195 7 chr5 117792545 117792694 -34744565 + B3A SINE B2 1 177 -21 7 1483 502 155 10 20 chr5 117792764 117792863 -34744396 + ID_B1 SINE B4 126 223 -1 7 1483 225 0 0 0 chr5 117793100 117793125 -34744134 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 7 1483 484 242 0 16 chr5 117793147 117793269 -34743990 - RSINE1 SINE B4 -43 122 3 7 1483 302 240 84 48 chr5 117793442 117793586 -34743673 + MIR SINE MIR 81 250 -18 7 1483 1122 107 0 63 chr5 117794237 117794314 -34742945 + B2_Mm2 SINE B2 1 73 -122 7 1483 2086 167 112 32 chr5 117794314 117794777 -34742482 - RLTR1C LTR ERV1 -3 500 1 7 1483 1122 107 0 63 chr5 117794777 117794851 -34742408 + B2_Mm2 SINE B2 74 145 -50 7 1483 324 48 0 0 chr5 117794851 117794893 -34742366 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1483 1122 107 0 63 chr5 117794893 117794929 -34742330 + B2_Mm2 SINE B2 146 177 -18 7 1483 1163 75 0 0 chr5 117795189 117795336 -34741923 + B1_Mus1 SINE Alu 2 148 0 7 1483 287 248 202 0 chr5 117795351 117795460 -34741799 + ID_B1 SINE B4 50 180 -44 7 1483 231 250 188 0 chr5 117795499 117795579 -34741680 + RCHARR1 DNA MER1_type 645 739 -235 7 1483 341 75 19 0 chr5 117795689 117795742 -34741517 + (GGGA)n Simple_repeat Simple_repeat 3 56 0 8 1483 654 273 10 48 chr5 117795801 117796009 -34741250 - RCHARR1 DNA MER1_type -47 927 728 8 1483 661 224 61 0 chr5 117796010 117796157 -34741102 + RSINE1 SINE B4 3 158 -7 8 1483 333 230 23 11 chr5 117796188 117796276 -34740983 - RCHARR1 DNA MER1_type -233 741 653 8 1483 227 154 0 25 chr5 117796314 117796354 -34740905 - B1F2 SINE Alu -110 39 1 8 1483 351 212 66 57 chr5 117796557 117796674 -34740585 - B1F1 SINE Alu -1 148 7 8 1483 207 105 0 26 chr5 117796686 117796725 -34740534 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 8 1483 1256 54 0 0 chr5 117796725 117796873 -34740386 - B1_Mus1 SINE Alu 0 148 1 8 1483 466 171 191 0 chr5 117796918 117797023 -34740236 + B1_Mus1 SINE Alu 2 126 -22 8 1483 572 325 62 52 chr5 117797234 117797562 -34739697 - RLTR26 LTR ERVK -75 552 168 8 1483 2361 106 16 0 chr5 117797632 117797954 -34739305 - ORR1A2 LTR MaLR 0 327 1 8 1483 947 241 0 40 chr5 117798580 117798805 -34738454 + B3 SINE B2 1 216 0 8 1483 526 318 67 21 chr5 117799562 117799800 -34737459 - B4A SINE B4 0 292 44 8 1483 1223 48 0 0 chr5 117799997 117800144 -34737115 + B1_Mus1 SINE Alu 1 147 -1 8 1483 1800 143 85 35 chr5 117800436 117800812 -34736447 + RMER10B LTR ERVL 4 398 0 8 1483 714 231 187 5 chr5 117801083 117801270 -34735989 - ID_B1 SINE B4 -2 222 2 8 1483 279 133 0 0 chr5 117801612 117801657 -34735602 + (GGA)n Simple_repeat Simple_repeat 1 45 0 8 1483 510 242 92 0 chr5 117802061 117802181 -34735078 + RSINE1 SINE B4 2 132 -33 8 1483 689 114 19 0 chr5 117802516 117802621 -34734638 + ID_B1 SINE B4 118 224 0 8 1483 31 0 0 0 chr5 117803734 117803765 -34733494 + AT_rich Low_complexity Low_complexity 1 31 0 8 1483 677 46 0 0 chr5 117804729 117804816 -34732443 - B1_Mus2 SINE Alu 0 147 61 8 1483 245 264 14 14 chr5 117805041 117805114 -34732145 + ID_B1 SINE B4 65 137 -87 8 1483 418 172 98 63 chr5 117805058 117805174 -34732085 + PB1D7 SINE Alu 5 147 -3 8 1483 465 294 87 0 chr5 117805195 117805321 -34731938 + RSINE1 SINE B4 5 141 -24 8 1483 201 39 0 0 chr5 117805350 117805376 -34731883 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1483 228 281 123 15 chr5 117805493 117805558 -34731701 + ID4_ SINE ID 9 80 -3 8 1483 521 265 50 25 chr5 117805637 117805796 -34731463 + B3 SINE B2 1 163 -53 8 1483 222 171 0 0 chr5 117805827 117805868 -34731391 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1483 252 0 0 0 chr5 117806185 117806213 -34731046 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1483 399 202 12 81 chr5 117807127 117807299 -34729960 + C-rich Low_complexity Low_complexity 5 164 0 8 1483 299 141 16 0 chr5 117807337 117807401 -34729858 + (CGG)n Simple_repeat Simple_repeat 2 66 0 8 1483 22 35 0 0 chr5 117807435 117807464 -34729795 + GC_rich Low_complexity Low_complexity 1 29 0 8 1483 258 190 86 0 chr5 117808642 117808700 -34728559 - L2a LINE L2 0 3426 3364 8 1483 571 176 109 43 chr5 117808858 117809042 -34728217 - B3 SINE B2 -9 207 12 8 1483 1186 191 29 5 chr5 117809108 117809318 -34727941 - B3 SINE B2 -1 215 1 8 1483 1490 59 0 26 chr5 117809328 117809519 -34727740 - B2_Mm2 SINE B2 -9 186 1 8 1483 475 239 213 21 chr5 117810109 117810297 -34726962 + L1MA8 LINE L1 5985 6208 -83 8 1483 210 174 0 0 chr5 117810810 117810856 -34726403 + G-rich Low_complexity Low_complexity 3 48 0 8 1483 339 85 0 0 chr5 117811521 117811568 -34725691 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1483 334 322 75 69 chr5 117811700 117811860 -34725399 + RSINE1 SINE B4 3 163 -2 8 1483 1800 130 166 48 chr5 117811990 117812346 -34724913 - RMER10B LTR ERVL 0 398 1 8 1483 722 226 152 0 chr5 117812510 117812687 -34724572 + B3 SINE B2 6 209 -7 8 1483 279 331 108 20 chr5 117813968 117814037 -34723222 - L1MB8 LINE L1 0 6178 6096 8 1483 267 274 128 0 chr5 117814037 117814139 -34723120 + PB1D7 SINE Alu 1 115 -5 8 1483 279 331 108 20 chr5 117814139 117814217 -34723042 - L1MB8 LINE L1 -83 6095 6018 8 1483 606 93 0 0 chr5 117814347 117814433 -34722826 + (TG)n Simple_repeat Simple_repeat 1 86 0 8 1483 288 255 96 19 chr5 117815224 117815328 -34721931 + MER21B LTR ERV1 32 143 -720 8 1483 653 192 131 0 chr5 117816424 117816554 -34720705 - B1_Mur3 SINE Alu -1 148 2 8 1483 302 259 172 49 chr5 117816568 117816690 -34720569 + B1_Mur3 SINE Alu 1 137 -12 8 1483 252 0 0 0 chr5 117816787 117816815 -34720444 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1483 359 317 35 0 chr5 117816823 117816965 -34720294 - RSINE1 SINE B4 -16 149 3 8 1483 1406 152 4 18 chr5 117817011 117817239 -34720020 - URR1B DNA MER1_type 0 225 1 8 1483 460 204 59 50 chr5 117817929 117818048 -34719211 - PB1D7 SINE Alu 0 120 1 8 1483 1497 68 5 10 chr5 117818088 117818282 -34718977 - B2_Mm2 SINE B2 0 195 3 8 1483 198 0 0 0 chr5 117818282 117818304 -34718955 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1483 1286 98 33 0 chr5 117818306 117818489 -34718770 - B2_Mm1a SINE B2 -3 190 2 8 1483 733 118 15 38 chr5 117818491 117818623 -34718636 - B1_Mus1 SINE Alu -1 147 19 8 1483 310 216 116 88 chr5 117818534 117818681 -34718578 - MT2B LTR ERVL -336 265 115 8 1483 559 176 9 29 chr5 117819080 117819185 -34718074 + PB1D9 SINE Alu 17 119 -1 8 1483 368 302 62 12 chr5 117819185 117819346 -34717913 + L1MA8 LINE L1 5828 5996 -295 8 1483 413 314 96 11 chr5 117821416 117821603 -34715656 - MER2 DNA MER2_type -23 322 120 8 1483 353 212 11 56 chr5 117821659 117821749 -34715510 - RSINE1 SINE B4 -5 160 75 8 1483 420 269 11 0 chr5 117822228 117822321 -34714938 + RSINE1 SINE B4 4 97 -68 8 1483 357 247 70 51 chr5 117822571 117822729 -34714530 - MLT1A0 LTR MaLR -204 161 1 8 1483 758 190 35 14 chr5 117822952 117823096 -34714163 - B1_Mur2 SINE Alu -2 147 1 8 1483 239 234 79 73 chr5 117823135 117823231 -34714028 - B1F SINE Alu -51 98 3 8 1483 223 203 0 28 chr5 117824233 117824304 -34712955 + (TG)n Simple_repeat Simple_repeat 1 69 0 8 1483 567 172 0 62 chr5 117824317 117824509 -34712750 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1483 200 246 0 34 chr5 117824526 117824585 -34712674 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1483 303 78 19 19 chr5 117824585 117824637 -34712622 - HAL1-3A_ME LINE L1 -830 2028 1977 8 1483 250 184 0 26 chr5 117824650 117824728 -34712531 + (TG)n Simple_repeat Simple_repeat 1 76 0 8 1483 260 192 128 93 chr5 117825167 117825253 -34712006 - PB1D10 SINE Alu -1 116 28 8 1483 284 261 54 11 chr5 117825220 117825313 -34711946 - ID_B1 SINE B4 -127 97 1 8 1483 267 324 0 13 chr5 117827141 117827216 -34710043 - AluG_3 SINE Alu -91 220 147 8 1483 26 0 0 0 chr5 117828424 117828450 -34708809 + AT_rich Low_complexity Low_complexity 1 26 0 8 1483 1148 36 14 28 chr5 117828688 117828832 -34708427 + B1_Mus1 SINE Alu 1 142 -6 8 1483 291 261 90 11 chr5 117829365 117829454 -34707805 - PB1D7 SINE Alu -7 113 18 8 1483 525 32 0 0 chr5 117830884 117830947 -34706312 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1483 314 231 4 0 chr5 117831558 117831629 -34705630 + ID4_ SINE ID 6 78 -74 8 185 295 316 41 21 chr5 117833696 117833793 -34703466 - PB1D7 SINE Alu -21 99 1 8 1484 741 227 6 69 chr5 117834920 117835095 -34702164 - RSINE1 SINE B4 0 165 2 8 1484 885 232 84 0 chr5 117835837 117836027 -34701232 - ID_B1 SINE B4 -18 206 1 8 1484 271 287 34 22 chr5 117836086 117836175 -34701084 - LTR33 LTR ERVL -2 513 424 8 1484 1356 158 14 0 chr5 117836183 117836404 -34700855 + URR1B DNA MER1_type 1 224 -1 8 1484 878 158 113 52 chr5 117837079 117837292 -34699967 + URR1A DNA MER1_type 1 226 0 8 1484 256 300 114 15 chr5 117837293 117837425 -34699834 + ORR1E LTR MaLR 95 239 -120 8 1484 687 241 127 11 chr5 117837531 117837720 -34699539 + B3 SINE B2 1 211 -5 8 1484 406 275 92 20 chr5 117838064 117838216 -34699043 + MER20 DNA MER1_type 1 163 -56 8 1484 240 228 152 0 chr5 117838314 117838406 -34698853 + L1M4 LINE L1 5814 5919 -265 8 1484 212 189 132 0 chr5 117838549 117838602 -34698657 + RSINE1 SINE B4 69 128 -37 8 1484 25 0 0 0 chr5 117838936 117838961 -34698298 + GC_rich Low_complexity Low_complexity 1 25 0 8 1484 517 314 0 0 chr5 117839331 117839484 -34697775 + (CA)n Simple_repeat Simple_repeat 2 154 0 8 1484 450 178 48 12 chr5 117839493 117839658 -34697601 + (CATA)n Simple_repeat Simple_repeat 1 171 0 8 1484 288 77 0 0 chr5 117839715 117839754 -34697505 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 8 1484 813 174 0 35 chr5 117839760 117839903 -34697356 - B1_Mus1 SINE Alu -8 140 3 8 1484 744 169 73 0 chr5 117839945 117840069 -34697190 + B1_Mur2 SINE Alu 17 149 0 8 1484 354 262 47 37 chr5 117840091 117840198 -34697061 - RSINE1 SINE B4 -17 148 41 8 1484 239 209 0 0 chr5 117840209 117840252 -34697007 + ID_B1 SINE B4 150 192 -32 8 1484 645 89 15 1 chr5 117840560 117840658 -34696601 - B1_Mus1 SINE Alu -20 107 1 8 1484 398 144 40 91 chr5 117840574 117840673 -34696586 - MT2B LTR ERVL -361 240 147 8 1484 439 311 30 24 chr5 117840719 117840887 -34696372 + RMER15 LTR ERVL 405 573 -2 8 1484 1011 130 47 36 chr5 117841285 117841477 -34695782 + B2_Mm2 SINE B2 2 195 0 8 1484 656 160 0 0 chr5 117841484 117841582 -34695677 + ORR1D1 LTR MaLR 1 98 -276 8 1484 363 248 8 66 chr5 117841582 117841661 -34695598 - ORR1D1 LTR MaLR 0 374 303 8 1484 742 63 0 0 chr5 117841661 117841756 -34695503 + BC1_Mm scRNA scRNA 1 95 -57 9 1484 655 222 56 77 chr5 117841750 117841945 -34695314 - ORR1D1 LTR MaLR -57 317 127 9 1484 2049 131 58 67 chr5 117841949 117842169 -34695090 - RLTR41 LTR ERV1 0 446 211 9 1484 1147 77 0 0 chr5 117842169 117842312 -34694947 - B1_Mus2 SINE Alu 0 147 5 9 1484 2049 131 58 67 chr5 117842312 117842451 -34694808 - RLTR41 LTR ERV1 -236 210 90 9 1484 4724 101 23 61 chr5 117842505 117843047 -34694212 + RMER19A LTR ERVK 1 508 -229 9 1484 3242 131 11 54 chr5 117843047 117843582 -34693677 + RLTR1B LTR ERV1 1 512 0 9 1484 4724 101 23 61 chr5 117843582 117843788 -34693471 + RMER19A LTR ERVK 509 720 -17 9 1484 542 139 0 0 chr5 117843788 117843867 -34693392 + B2_Mm2 SINE B2 3 81 -114 9 1484 189 0 0 0 chr5 117843913 117843934 -34693325 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 9 1484 662 194 110 14 chr5 117844001 117844147 -34693112 + ORR1D1 LTR MaLR 215 374 0 8 1484 977 261 79 15 chr5 117844275 117844547 -34692712 + B4 SINE B4 1 292 0 9 1484 207 0 0 0 chr5 117844590 117844613 -34692646 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1484 953 141 14 0 chr5 117845031 117845173 -34692086 + B1_Mus1 SINE Alu 5 148 0 9 1484 193 330 103 37 chr5 117845283 117845390 -34691869 + L2a LINE L2 3313 3426 0 9 1484 180 292 29 58 chr5 117845657 117845726 -34691533 + L4 LINE RTE 1300 1366 -663 9 1484 270 297 93 0 chr5 117845760 117845878 -34691381 + MER5A DNA MER1_type 30 158 -31 9 1484 1228 274 114 9 chr5 117845988 117846331 -34690928 - MTEa LTR MaLR 0 379 1 9 1484 778 211 0 7 chr5 117846450 117846598 -34690661 + B1_Mus1 SINE Alu 2 148 0 9 1484 755 48 10 0 chr5 117847085 117847189 -34690070 + (TG)n Simple_repeat Simple_repeat 1 105 0 9 1484 399 41 0 0 chr5 117847723 117847772 -34689487 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1484 432 55 0 0 chr5 117847996 117848051 -34689208 + (TCCCC)n Simple_repeat Simple_repeat 1 55 0 9 1484 635 0 0 13 chr5 117848053 117848129 -34689130 + (TC)n Simple_repeat Simple_repeat 2 76 0 9 1484 549 177 113 5 chr5 117848648 117848766 -34688493 + B1F SINE Alu 25 149 0 9 1484 357 24 0 0 chr5 117848796 117848838 -34688421 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1484 1734 155 73 73 chr5 117849044 117849239 -34688020 - RMER17C LTR ERVK 0 410 214 9 1484 477 50 0 0 chr5 117849239 117849299 -34687960 + (GA)n Simple_repeat Simple_repeat 2 61 0 9 1484 1734 155 73 73 chr5 117849299 117849513 -34687746 - RMER17C LTR ERVK -197 213 2 9 1484 253 238 0 0 chr5 117849831 117849873 -34687386 + B4A SINE B4 2 43 -249 9 1484 189 0 0 0 chr5 117849893 117849914 -34687345 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9 1484 598 259 58 63 chr5 117849915 117850121 -34687138 + B4A SINE B4 30 234 -58 9 1484 243 79 0 0 chr5 117850140 117850178 -34687081 + (T)n Simple_repeat Simple_repeat 1 38 0 9 1484 719 253 37 6 chr5 117850208 117850371 -34686888 + MTEa LTR MaLR 1 168 -211 9 1484 1131 114 18 0 chr5 117850445 117850612 -34686647 - RLTR1B LTR ERV1 0 512 343 9 1484 434 71 0 0 chr5 117850616 117850672 -34686587 - RLTR1B LTR ERV1 -102 410 355 9 1484 690 210 41 48 chr5 117850656 117850801 -34686458 + B1_Mur4 SINE Alu 6 149 -1 9 1484 403 285 36 113 chr5 117850672 117850866 -34686393 + B4 SINE B4 99 277 -15 9 1484 2746 138 0 21 chr5 117850882 117851312 -34685947 + MTC LTR MaLR 1 421 0 9 1484 271 125 106 0 chr5 117851361 117851465 -34685794 + (TA)n Simple_repeat Simple_repeat 1 115 0 9 1484 411 261 108 47 chr5 117851467 117851680 -34685579 - Lx8 LINE L1 -2 7471 7246 9 1484 806 206 142 5 chr5 117851720 117851910 -34685349 - B3 SINE B2 0 216 1 9 1484 1134 81 0 26 chr5 117851928 117852080 -34685179 + B1_Mus1 SINE Alu 1 148 0 9 1484 1815 125 29 156 chr5 117853321 117853494 -34683765 - RLTR9A LTR ERVK -2 366 238 9 1484 1209 48 7 0 chr5 117853494 117853639 -34683620 - B1_Mus2 SINE Alu 0 147 2 9 1484 1815 125 29 156 chr5 117853639 117853874 -34683385 - RLTR9A LTR ERVK -131 237 10 9 1484 453 36 0 0 chr5 117853874 117853929 -34683330 + (TG)n Simple_repeat Simple_repeat 1 55 0 9 1484 352 266 11 0 chr5 117853941 117854035 -34683224 + Lx8 LINE L1 6451 6545 -928 9 1484 300 279 125 47 chr5 117854049 117854177 -34683082 + MLT1D LTR MaLR 111 248 -257 9 1484 442 255 37 19 chr5 117854194 117854302 -34682957 - PB1D10 SINE Alu -5 112 3 9 1484 1411 62 11 0 chr5 117854357 117854533 -34682726 + B2_Mm1t SINE B2 2 179 -14 9 1484 436 98 298 74 chr5 117854581 117854702 -34682557 + B2_Mm2 SINE B2 48 195 0 9 1484 2428 71 3 94 chr5 117854774 117855134 -34682125 + ORR1A2 LTR MaLR 1 327 0 9 1484 933 142 0 0 chr5 117855324 117855458 -34681801 + B1_Mur4 SINE Alu 1 134 -16 9 1484 584 269 118 19 chr5 117855461 117855706 -34681553 + B4A SINE B4 7 289 -3 9 1484 21 0 0 0 chr5 117856155 117856176 -34681083 + AT_rich Low_complexity Low_complexity 1 21 0 9 1484 222 37 0 0 chr5 117856177 117856204 -34681055 + (TA)n Simple_repeat Simple_repeat 1 27 0 9 1484 1360 87 0 21 chr5 117856204 117856392 -34680867 - B2_Mm2 SINE B2 -11 184 1 9 1484 755 227 69 170 chr5 117856444 117856779 -34680480 - RMER2 LTR ERV1 -266 301 1 9 1484 929 258 64 18 chr5 117856799 117857079 -34680180 + Lx8 LINE L1 6253 6545 -928 9 1484 508 252 0 0 chr5 117857144 117857251 -34680008 + Lx8 LINE L1 6693 6799 -674 9 1484 201 139 0 0 chr5 117857262 117857305 -34679954 + (T)n Simple_repeat Simple_repeat 1 43 0 9 1484 1163 74 0 13 chr5 117857306 117857456 -34679803 - B1_Mus1 SINE Alu 0 148 1 9 1484 2933 69 39 16 chr5 117857489 117857874 -34679385 - MTA_Mm LTR MaLR 0 396 3 9 1484 831 40 0 0 chr5 117857874 117857974 -34679285 + B1_Mus2 SINE Alu 48 147 0 9 1484 279 333 94 45 chr5 117858001 117858287 -34678972 + Lx8 LINE L1 7172 7471 -2 9 1484 705 244 31 19 chr5 117858320 117858479 -34678780 + B3 SINE B2 8 168 -48 9 1484 858 272 25 20 chr5 117859051 117859250 -34678009 + ID_B1 SINE B4 1 200 -24 9 1484 350 267 0 0 chr5 117859889 117859964 -34677295 + ID_B1 SINE B4 109 183 -41 9 1484 478 198 0 23 chr5 117859978 117860107 -34677152 + GA-rich Low_complexity Low_complexity 1 126 0 9 1484 331 290 119 22 chr5 117860114 117860248 -34677011 + HAL1-3A_ME LINE L1 2293 2439 -419 9 1484 200 189 0 36 chr5 117860248 117860303 -34676956 + GA-rich Low_complexity Low_complexity 2 54 0 9 1484 748 197 7 47 chr5 117860666 117860770 -34676489 + RSINE1 SINE B4 23 124 -41 9 1484 423 0 0 0 chr5 117860770 117860817 -34676442 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1484 748 197 7 47 chr5 117860817 117860861 -34676398 + RSINE1 SINE B4 125 165 0 9 1484 23 0 0 0 chr5 117860892 117860915 -34676344 + AT_rich Low_complexity Low_complexity 1 23 0 9 1484 335 296 47 31 chr5 117861636 117861765 -34675494 + L1MEg LINE L1 568 698 -5386 9 1484 243 265 92 64 chr5 117862080 117862108 -34675151 - B4A SINE B4 -44 248 107 9 1484 681 119 73 9 chr5 117862108 117862218 -34675041 - B1_Mus2 SINE Alu -8 139 23 9 1484 446 234 36 36 chr5 117862248 117862359 -34674900 - PB1 SINE Alu -16 111 1 9 1484 363 341 45 8 chr5 117862542 117862675 -34674584 - MER58B DNA MER1_type 0 341 204 9 1484 216 0 0 0 chr5 117862757 117862781 -34674478 + (TGG)n Simple_repeat Simple_repeat 2 25 0 9 1484 180 0 0 0 chr5 117862840 117862860 -34674399 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 9 1484 795 157 7 79 chr5 117862861 117863013 -34674246 - B1_Mur1 SINE Alu -8 141 1 9 1484 21 36 0 0 chr5 117863722 117863750 -34673509 + GC_rich Low_complexity Low_complexity 1 28 0 9 1484 315 177 0 0 chr5 117864073 117864135 -34673124 + (CAG)n Simple_repeat Simple_repeat 3 64 0 9 1484 462 132 0 0 chr5 117864380 117864456 -34672803 + (TCC)n Simple_repeat Simple_repeat 2 77 0 9 1484 192 125 0 0 chr5 117864789 117864821 -34672438 + (GGA)n Simple_repeat Simple_repeat 1 32 0 9 1484 238 50 24 24 chr5 117865340 117865381 -34671878 + (TTA)n Simple_repeat Simple_repeat 2 42 0 9 1484 336 48 0 0 chr5 117865631 117865673 -34671586 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1484 288 77 0 0 chr5 117866393 117866432 -34670827 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1484 301 224 60 0 chr5 117866881 117866948 -34670311 + ID4 SINE ID 3 73 -10 9 1484 1396 143 13 5 chr5 117867069 117867293 -34669966 - MTC LTR MaLR 0 421 196 9 1484 272 177 32 0 chr5 117867293 117867355 -34669904 + CT-rich Low_complexity Low_complexity 3 66 0 9 1484 441 19 0 0 chr5 117867377 117867431 -34669828 - B2_Mm2 SINE B2 -141 54 1 9 1484 1063 143 74 30 chr5 117867431 117867632 -34669627 - MTC LTR MaLR -211 210 1 9 1484 438 207 12 12 chr5 117867996 117868079 -34669180 - ID4 SINE ID 0 83 1 9 1484 409 296 0 9 chr5 117868125 117868234 -34669025 + PB1D10 SINE Alu 1 108 -9 9 1484 215 255 111 56 chr5 117868260 117868368 -34668891 + BC1_Mm scRNA scRNA 14 127 -25 9 1484 198 128 0 0 chr5 117868414 117868453 -34668806 + (TC)n Simple_repeat Simple_repeat 2 40 0 9 1484 1189 75 0 0 chr5 117868464 117868610 -34668649 - B1_Mus1 SINE Alu -2 146 1 9 1484 336 268 108 12 chr5 117868669 117868752 -34668507 - RSINE1 SINE B4 -71 94 4 9 1484 926 279 62 79 chr5 117869937 117869975 -34667284 - ORR1E LTR MaLR -60 299 264 9 1484 559 225 0 32 chr5 117869975 117870099 -34667160 + PB1D9 SINE Alu 1 120 0 9 1484 926 279 62 79 chr5 117870099 117870254 -34667005 - ORR1E LTR MaLR -96 263 101 9 1484 959 111 172 96 chr5 117870254 117870463 -34666796 + URR1B DNA MER1_type 1 225 0 9 1484 926 279 62 79 chr5 117870463 117870572 -34666687 - ORR1E LTR MaLR -259 100 1 9 1484 555 296 39 56 chr5 117871276 117871509 -34665750 - MER58B DNA MER1_type 0 341 113 9 1484 699 75 0 0 chr5 117871539 117871633 -34665626 + (CA)n Simple_repeat Simple_repeat 2 95 0 9 1484 423 0 0 0 chr5 117872426 117872473 -34664786 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1484 373 296 110 61 chr5 117872675 117872938 -34664321 - MLT1H2 LTR MaLR -139 350 75 9 1484 203 269 0 0 chr5 117873096 117873148 -34664111 - L2a LINE L2 -342 3084 3033 9 1484 309 242 172 0 chr5 117873263 117873362 -34663897 + PB1D9 SINE Alu 3 118 -2 9 1484 318 261 0 0 chr5 117873534 117873645 -34663614 + (TG)n Simple_repeat Simple_repeat 1 111 0 1 1484 1215 233 47 11 chr5 117873647 117873925 -34663334 - B4A SINE B4 0 292 5 1 1484 378 0 0 0 chr5 117873957 117873999 -34663260 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1 1484 703 228 6 74 chr5 117874024 117874199 -34663060 - RSINE1 SINE B4 0 165 3 1 1484 234 0 0 0 chr5 117874464 117874490 -34662769 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1 1484 239 295 85 26 chr5 117875287 117875440 -34661819 + Charlie5 DNA MER1_type 2424 2585 -39 1 1484 455 271 0 17 chr5 117875523 117875703 -34661556 + CT-rich Low_complexity Low_complexity 3 179 0 1 1484 239 340 50 31 chr5 117875731 117875953 -34661306 + L1MB4 LINE L1 5953 6178 -2 1 1484 1181 55 7 0 chr5 117875989 117876135 -34661124 - B1_Mus1 SINE Alu 0 148 2 1 1484 218 219 16 0 chr5 117876860 117876924 -34660335 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1484 319 310 45 22 chr5 117876963 117877052 -34660207 - B4 SINE B4 -170 122 32 1 1484 448 216 91 0 chr5 117877153 117877241 -34660018 - PB1 SINE Alu -21 106 11 1 1484 343 288 25 33 chr5 117877241 117877275 -34659984 - ID_B1 SINE B4 -48 176 56 1 1484 725 273 139 12 chr5 117877594 117877839 -34659420 - B4A SINE B4 -14 278 3 1 1484 1832 151 129 3 chr5 117878026 117878211 -34659048 - ORR1C1 LTR MaLR 0 378 170 1 1484 684 0 0 0 chr5 117878211 117878287 -34658972 + (GA)n Simple_repeat Simple_repeat 2 77 0 1 1484 1832 151 129 3 chr5 117878287 117878433 -34658826 - ORR1C1 LTR MaLR -209 169 6 1 1484 478 229 50 8 chr5 117878510 117878629 -34658630 - RSINE1 SINE B4 -31 134 11 1 1484 255 103 26 0 chr5 117878772 117878811 -34658448 + MT2A LTR ERVL 1 40 -493 1 1484 821 245 378 7 chr5 117878811 117879077 -34658182 + MTD LTR MaLR 1 418 -1 1 1484 335 290 61 14 chr5 117879117 117879264 -34657995 - L1MD LINE L1 -862 5284 5131 1 1484 498 212 113 28 chr5 117879572 117879588 -34657671 - B4A SINE B4 -7 285 271 1 1484 510 119 0 0 chr5 117879588 117879672 -34657587 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1484 498 212 113 28 chr5 117879672 117879796 -34657463 - B4A SINE B4 -22 270 133 1 1484 503 75 306 36 chr5 117879815 117879926 -34657333 - B2_Mm2 SINE B2 -8 187 47 1 1484 1092 81 131 0 chr5 117879956 117880116 -34657143 - B2_Mm1t SINE B2 -12 181 1 1 1484 388 263 0 0 chr5 117880120 117880196 -34657063 - B4A SINE B4 -200 92 17 1 1484 744 215 129 10 chr5 117880256 117880449 -34656810 - B3 SINE B2 0 216 1 1 1484 648 205 18 0 chr5 117880568 117880734 -34656525 + GA-rich Low_complexity Low_complexity 2 170 0 1 1484 243 290 11 21 chr5 117880737 117880832 -34656427 + L1MC LINE L1 4692 4785 -1361 1 1484 558 274 136 84 chr5 117880832 117881390 -34655869 - L1MD LINE L1 -1685 4461 3875 1 1484 240 184 0 0 chr5 117881434 117881472 -34655787 + tRNA-Tyr-TAC tRNA tRNA 1 38 -38 1 1484 874 196 19 72 chr5 117881532 117881741 -34655518 - B3A SINE B2 0 198 1 1 1484 308 291 230 4 chr5 117881741 117881982 -34655277 - L1M5 LINE L1 -2656 3490 3192 1 1484 942 76 84 0 chr5 117881986 117882117 -34655142 + B1_Mus1 SINE Alu 6 147 -1 1 1484 259 282 96 6 chr5 117882265 117882443 -34654816 - L1M5 LINE L1 -3035 3111 2918 1 1484 820 201 0 0 chr5 117882501 117882640 -34654619 - B1_Mur1 SINE Alu -7 142 4 1 1484 414 0 0 0 chr5 117882660 117882706 -34654553 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1484 457 325 96 36 chr5 117882708 117883039 -34654220 - L1MD LINE L1 -3285 2861 2517 1 1484 231 36 0 0 chr5 117883106 117883134 -34654125 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1 1484 448 275 99 0 chr5 117883134 117883276 -34653983 - RSINE1 SINE B4 -1 164 9 1 1484 634 264 155 5 chr5 117883278 117883472 -34653787 - ID_B1 SINE B4 -1 223 1 1 1484 215 175 25 0 chr5 117883507 117883547 -34653712 + CT-rich Low_complexity Low_complexity 2 42 0 1 1484 1263 79 61 17 chr5 117883557 117883737 -34653522 - B2_Mm1a SINE B2 -4 189 2 1 1484 667 309 48 35 chr5 117884180 117884551 -34652708 - RLTR12B LTR ERVK -205 323 1 1 1484 326 317 60 18 chr5 117884551 117884718 -34652541 - L1MB5 LINE L1 -300 5874 5701 1 1484 803 225 19 0 chr5 117884910 117885070 -34652189 + RSINE1 SINE B4 3 165 0 1 1484 531 229 6 0 chr5 117885070 117885583 -34651676 + (CA)n Simple_repeat Simple_repeat 1 516 0 1 1484 2126 280 52 26 chr5 117885583 117886350 -34650909 - Lx8 LINE L1 -20 7453 6667 1 1484 215 301 0 5 chr5 117886395 117886460 -34650799 - ID4_ SINE ID -3 80 17 1 1484 2130 142 96 13 chr5 117886469 117886854 -34650405 + MTC LTR MaLR 5 421 0 1 1484 296 394 0 0 chr5 117887191 117887333 -34649926 + (TG)n Simple_repeat Simple_repeat 1 142 0 1 1484 324 0 0 0 chr5 117887556 117887592 -34649667 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1484 1075 99 0 0 chr5 117887645 117887786 -34649473 + B1_Mus1 SINE Alu 3 143 -5 1 1484 219 36 0 0 chr5 117887791 117887819 -34649440 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1 1484 232 229 42 0 chr5 117887940 117887988 -34649271 + ID SINE ID 25 74 -150 1 1484 518 215 90 45 chr5 117888531 117888664 -34648595 + ID_B1 SINE B4 90 224 0 1 1484 251 306 177 20 chr5 117888547 117888694 -34648565 - YREP_Mm Unknown Unknown -1516 296 127 1 1484 1238 70 0 0 chr5 117888711 117888868 -34648391 + B2_Mm2 SINE B2 2 158 -37 1 1484 297 0 0 0 chr5 117888869 117888902 -34648357 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 1 1484 2208 113 3 6 chr5 117888911 117889231 -34648028 - ORR1A2 LTR MaLR -8 319 1 1 1484 393 22 0 0 chr5 117889244 117889290 -34647969 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1484 317 239 158 70 chr5 117889433 117889604 -34647655 - B3A SINE B2 -12 186 1 1 1484 3175 43 48 10 chr5 117889721 117890117 -34647142 - IAPLTR2a LTR ERVK 0 411 1 1 1484 225 0 0 0 chr5 117890224 117890249 -34647010 + (TCCC)n Simple_repeat Simple_repeat 3 27 0 1 1484 261 281 24 35 chr5 117890274 117890359 -34646900 - ID_B1 SINE B4 -28 196 113 1 1484 267 249 146 77 chr5 117890745 117891006 -34646253 - RMER10A LTR ERVL -163 279 1 1 1484 191 36 36 0 chr5 117891646 117891674 -34645585 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 1 1484 625 212 23 0 chr5 117892020 117892152 -34645107 + B1_Mur1 SINE Alu 2 136 -13 1 1484 753 223 127 5 chr5 117892168 117892357 -34644902 + B3 SINE B2 2 213 -3 1 1484 480 279 0 0 chr5 117892522 117892626 -34644633 + B4 SINE B4 175 278 -14 1 1484 457 244 95 9 chr5 117892664 117892780 -34644479 + RSINE1 SINE B4 1 126 -39 1 1484 350 305 221 5 chr5 117892983 117893293 -34643966 - L2a LINE L2 -287 3139 2771 1 1484 183 42 0 0 chr5 117893442 117893466 -34643793 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1484 536 213 18 9 chr5 117894045 117894154 -34643105 - B3A SINE B2 -88 110 1 1 1484 307 224 45 16 chr5 117895080 117895178 -34642081 - MTEa LTR MaLR 0 419 310 1 1484 572 239 26 37 chr5 117895466 117895641 -34641618 - B3A SINE B2 -24 169 3 1 1484 193 261 108 54 chr5 117895679 117895772 -34641487 + MIR SINE MIR 49 146 -116 1 1484 1195 109 133 10 chr5 117895798 117895993 -34641266 - URR1A DNA MER1_type -3 223 5 1 1484 637 180 6 23 chr5 117896295 117896466 -34640793 + CT-rich Low_complexity Low_complexity 3 170 0 1 1484 347 209 17 17 chr5 117896477 117896594 -34640665 + CT-rich Low_complexity Low_complexity 1 117 0 1 1484 322 322 65 65 chr5 117896597 117896750 -34640509 - HAL1-3A_ME LINE L1 -422 2436 2284 1 1484 509 227 0 7 chr5 117896759 117896901 -34640358 + CT-rich Low_complexity Low_complexity 1 141 0 1 1484 280 248 70 114 chr5 117896901 117897015 -34640244 - B1F1 SINE Alu -22 128 19 1 1484 917 234 124 34 chr5 117897548 117897814 -34639445 - B4A SINE B4 0 292 3 1 1484 204 216 0 0 chr5 117898037 117898088 -34639171 + T-rich Low_complexity Low_complexity 1 51 0 1 1484 534 230 93 10 chr5 117898184 117898377 -34638882 - L1MB7 LINE L1 -189 5995 5787 1 1484 257 261 23 16 chr5 117898385 117898479 -34638780 - ORR1E LTR MaLR -10 369 270 1 1484 877 178 0 7 chr5 117898537 117898684 -34638575 - B1_Mur4 SINE Alu 0 150 5 1 1484 292 269 43 93 chr5 117899269 117899505 -34637754 - MIR SINE MIR -28 248 21 1 1484 249 158 0 162 chr5 117899554 117899622 -34637637 - PB1D10 SINE Alu -6 111 55 1 1484 312 236 6 0 chr5 117900258 117900426 -34636833 + (CA)n Simple_repeat Simple_repeat 1 169 0 1 1484 300 170 21 0 chr5 117900443 117900490 -34636769 + HAL1-3A_ME LINE L1 1982 2029 -829 1 1484 402 74 0 0 chr5 117900497 117900551 -34636708 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1484 222 62 0 0 chr5 117900566 117900598 -34636661 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1484 814 218 33 38 chr5 117900855 117901065 -34636194 + B3 SINE B2 1 209 -7 1 1484 257 0 0 29 chr5 117901134 117901168 -34636091 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1 1484 643 350 79 34 chr5 117901174 117901792 -34635467 - Lx8 LINE L1 -2 7471 6826 1 1484 1219 62 0 0 chr5 117901889 117902035 -34635224 + B1_Mus1 SINE Alu 3 148 0 1 1484 271 17 0 108 chr5 117902035 117902100 -34635159 + (TAAAAA)n Simple_repeat Simple_repeat 4 61 0 1 1484 189 0 0 0 chr5 117902108 117902129 -34635130 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1484 907 202 88 21 chr5 117902150 117902342 -34634917 - B3 SINE B2 -11 205 1 1 1484 942 161 0 3 chr5 117902356 117902623 -34634636 + CT-rich Low_complexity Low_complexity 1 266 0 1 1484 388 72 319 26 chr5 117902644 117902757 -34634502 - B2_Mm2 SINE B2 -3 192 47 1 1484 1184 82 6 0 chr5 117902774 117902933 -34634326 - B2_Mm2 SINE B2 -22 173 14 1 1484 1284 126 21 97 chr5 117903244 117903326 -34633933 + URR1A DNA MER1_type 5 89 -137 1 1484 1451 59 16 11 chr5 117903326 117903513 -34633746 - B2_Mm2 SINE B2 -6 189 2 1 1484 1284 126 21 97 chr5 117903513 117903525 -34633734 + URR1A DNA MER1_type 90 90 -136 1 1484 1250 34 0 20 chr5 117903525 117903674 -34633585 - B1_Mm SINE Alu 0 147 2 1 1484 1284 126 21 97 chr5 117903674 117903816 -34633443 + URR1A DNA MER1_type 90 224 -2 1 1484 544 301 15 0 chr5 117903900 117904036 -34633223 + RSINE1 SINE B4 1 138 -27 1 1484 414 0 0 0 chr5 117904067 117904113 -34633146 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1484 1060 110 0 0 chr5 117904231 117904367 -34632892 + B1_Mus1 SINE Alu 1 136 -12 1 1484 519 60 0 0 chr5 117904367 117904434 -34632825 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1484 519 121 30 0 chr5 117904495 117904594 -34632665 + GA-rich Low_complexity Low_complexity 1 102 0 1 1484 225 94 0 0 chr5 117905127 117905159 -34632100 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1 1484 741 151 0 25 chr5 117905159 117905281 -34631978 - B1_Mur4 SINE Alu -10 140 22 1 1484 571 204 18 0 chr5 117905298 117905411 -34631848 - PB1D10 SINE Alu -2 115 1 1 1484 189 0 0 0 chr5 117905451 117905472 -34631787 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1 1484 362 287 90 30 chr5 117906359 117906492 -34630767 - MIR SINE MIR -115 147 7 1 1484 207 139 0 44 chr5 117906577 117906622 -34630637 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 1 1484 506 79 0 13 chr5 117906733 117906810 -34630449 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 1484 245 185 0 15 chr5 117906824 117906890 -34630369 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1484 463 132 11 11 chr5 117906906 117906998 -34630261 + GA-rich Low_complexity Low_complexity 1 92 0 1 1484 666 78 0 0 chr5 117907048 117907150 -34630109 + (TC)n Simple_repeat Simple_repeat 1 102 0 1 1484 227 294 39 16 chr5 117907715 117907843 -34629416 + (CAGGG)n Simple_repeat Simple_repeat 5 135 0 1 1484 327 271 63 63 chr5 117908285 117908411 -34628848 + RMER15 LTR ERVL 435 560 -15 1 1484 21 0 0 0 chr5 117908943 117908964 -34628295 + AT_rich Low_complexity Low_complexity 1 21 0 1 1484 528 282 28 7 chr5 117908970 117909113 -34628146 - RSINE1 SINE B4 -16 149 4 1 1484 198 0 0 0 chr5 117909324 117909346 -34627913 + (CATAG)n Simple_repeat Simple_repeat 5 26 0 1 1484 37 23 0 0 chr5 117909798 117909842 -34627417 + AT_rich Low_complexity Low_complexity 1 44 0 1 1484 1179 174 44 19 chr5 117909896 117910101 -34627158 + B3 SINE B2 7 216 0 1 1484 216 0 0 0 chr5 117910112 117910136 -34627123 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1484 545 202 8 56 chr5 117910161 117910287 -34626972 + PB1D9 SINE Alu 1 120 0 1 1484 467 214 39 0 chr5 117910288 117910391 -34626868 - PB1D7 SINE Alu -5 115 9 1 1484 255 270 185 19 chr5 117910391 117910442 -34626817 - B4A SINE B4 -67 224 43 1 1484 757 271 65 10 chr5 117910815 117911016 -34626243 - B3 SINE B2 -3 213 2 1 1484 896 213 64 10 chr5 117911091 117911295 -34625964 - B3 SINE B2 -1 215 1 1 1484 374 261 102 22 chr5 117911315 117911452 -34625807 - Lx7 LINE L1 -1960 5736 5589 1 1484 595 314 19 10 chr5 117911960 117912169 -34625090 + MLT1A0 LTR MaLR 136 346 -19 1 1484 503 328 0 0 chr5 117912228 117912408 -34624851 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1484 577 295 93 37 chr5 117912436 117912704 -34624555 - B4A SINE B4 -8 284 2 1 1484 258 32 0 0 chr5 117912999 117913030 -34624229 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1484 642 261 130 100 chr5 117913749 117914119 -34623140 - MLT1C LTR MaLR -21 446 66 1 1484 656 241 15 8 chr5 117914929 117915063 -34622196 - RSINE1 SINE B4 -28 137 3 1 1484 258 239 22 0 chr5 117915138 117915216 -34622043 - L1MA6 LINE L1 -194 6106 6023 1 1484 484 223 0 11 chr5 117915420 117915515 -34621744 + RSINE1 SINE B4 2 95 -70 1 1484 275 242 44 29 chr5 117915773 117915841 -34621418 - PB1D7 SINE Alu -9 111 43 1 1484 648 236 79 0 chr5 117915872 117916012 -34621247 + RSINE1 SINE B4 2 152 -13 1 1484 361 247 112 3 chr5 117916589 117916692 -34620567 + B1F SINE Alu 1 111 -9 1 1484 23 33 0 0 chr5 117916881 117916911 -34620348 + AT_rich Low_complexity Low_complexity 1 30 0 1 1484 492 18 0 0 chr5 117917372 117917429 -34619830 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1484 369 342 6 50 chr5 117917595 117917755 -34619504 + MER5A DNA MER1_type 4 156 -33 1 1484 803 249 59 15 chr5 117917868 117918072 -34619187 - ID_B1 SINE B4 -10 214 2 1 1484 241 278 101 20 chr5 117918111 117918149 -34619110 - PB1D10 SINE Alu 0 117 77 1 1484 243 0 0 0 chr5 117918149 117918176 -34619083 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1 1484 868 189 7 0 chr5 117918184 117918327 -34618932 - B1_Mus2 SINE Alu -3 144 1 1 1484 241 278 101 20 chr5 117918327 117918378 -34618881 - PB1D10 SINE Alu -53 64 11 1 1484 915 243 5 27 chr5 117918429 117918615 -34618644 + ID_B1 SINE B4 4 185 -39 1 1484 465 232 12 6 chr5 117918631 117918800 -34618459 + GA-rich Low_complexity Low_complexity 1 170 0 1 1484 360 0 0 0 chr5 117919223 117919263 -34617996 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1484 2256 161 110 7 chr5 117919270 117919689 -34617570 - MT2A LTR ERVL -71 462 1 1 1484 1434 88 0 20 chr5 117919996 117920194 -34617065 - B2_Mm2 SINE B2 0 195 2 1 1484 827 150 20 41 chr5 117920197 117920343 -34616916 - B1_Mus2 SINE Alu 0 147 5 1 1484 1053 248 39 10 chr5 117920343 117920652 -34616607 - MERVL_2A-int LTR ERVL -288 5473 5156 1 1484 332 77 0 19 chr5 117920661 117920714 -34616545 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1484 309 314 111 53 chr5 117920724 117920916 -34616343 - B4A SINE B4 -14 278 75 1 1484 534 194 29 72 chr5 117921133 117921272 -34615987 - B3A SINE B2 -1 197 65 1 1484 495 87 0 0 chr5 117921346 117921415 -34615844 + (TGG)n Simple_repeat Simple_repeat 1 69 0 1 1484 269 306 23 55 chr5 117921539 117921667 -34615592 + MIRb SINE MIR 117 240 -28 1 1484 508 258 8 24 chr5 117921696 117921823 -34615436 - PB1 SINE Alu -2 125 1 1 1484 630 173 0 0 chr5 117921852 117921985 -34615274 + (TG)n Simple_repeat Simple_repeat 1 133 0 1 1484 660 255 25 69 chr5 117921985 117922145 -34615114 - RSINE1 SINE B4 0 165 13 1 1484 429 299 0 0 chr5 117922546 117922643 -34614616 - PB1D10 SINE Alu -9 108 12 1 1484 3379 25 28 0 chr5 117922643 117923043 -34614216 + RLTR10A LTR ERVK 1 411 0 1 1484 817 234 106 12 chr5 117923068 117923323 -34613936 - B4A SINE B4 -12 280 2 1 1484 1012 87 58 0 chr5 117923515 117923653 -34613606 - B1_Mus1 SINE Alu -1 147 2 1 1484 772 267 69 109 chr5 117924045 117924348 -34612911 - B4A SINE B4 0 292 2 1 1484 185 154 0 25 chr5 117924393 117924433 -34612826 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1484 466 309 13 32 chr5 117924444 117924601 -34612658 - RSINE1 SINE B4 -7 158 5 1 1484 2317 113 0 58 chr5 117924651 117924998 -34612261 + ORR1A2 LTR MaLR 1 327 0 1 1484 665 210 0 39 chr5 117925033 117925162 -34612097 - RSINE1 SINE B4 -40 125 2 1 1484 232 295 0 0 chr5 117925426 117925487 -34611772 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1484 328 279 0 0 chr5 117925490 117925558 -34611701 - B4 SINE B4 -2 290 223 1 1484 270 81 0 0 chr5 117925576 117925613 -34611646 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1484 186 133 0 0 chr5 117925627 117925657 -34611602 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 1 1484 1099 166 55 5 chr5 117925660 117925860 -34611399 - B3 SINE B2 -6 210 1 1 1484 722 211 209 11 chr5 117925875 117926062 -34611197 - B4 SINE B4 -66 226 3 1 1484 318 26 0 0 chr5 117926082 117926121 -34611138 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 1 1484 811 177 13 26 chr5 117926147 117926298 -34610961 - B1_Mur2 SINE Alu 0 149 1 1 1484 390 259 0 0 chr5 117926465 117926546 -34610713 - ID4_ SINE ID -1 82 2 1 1484 428 185 108 11 chr5 117927335 117927475 -34609784 - ID_B1 SINE B4 -17 207 7 1 1484 272 246 0 0 chr5 117927766 117927823 -34609436 - ID4_ SINE ID 0 83 27 1 1484 387 310 44 44 chr5 117928116 117928298 -34608961 - MLT1E1A LTR MaLR -40 640 459 1 1484 921 271 75 27 chr5 117928714 117928737 -34608522 + ORR1E LTR MaLR 1 23 -336 1 1484 219 103 0 0 chr5 117928737 117928776 -34608483 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1484 921 271 75 27 chr5 117928776 117929044 -34608215 + ORR1E LTR MaLR 24 305 -54 1 1484 841 82 35 12 chr5 117929044 117929217 -34608042 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 1 1484 265 340 19 32 chr5 117929217 117929241 -34608018 + ORR1E LTR MaLR 325 348 -31 1 1484 1126 76 31 6 chr5 117929241 117929561 -34607698 + (TCTA)n Simple_repeat Simple_repeat 1 328 0 1 1484 854 288 97 3 chr5 117929561 117929871 -34607388 - Lx6 LINE L1 -26 7434 7096 1 1484 256 204 0 0 chr5 117929871 117929920 -34607339 + B4A SINE B4 115 163 -129 1 1484 858 193 0 0 chr5 117930345 117930687 -34606572 + (TG)n Simple_repeat Simple_repeat 1 342 0 1 1484 1142 79 0 0 chr5 117930689 117930829 -34606430 - B1_Mus2 SINE Alu -6 141 2 1 1484 486 217 0 0 chr5 117930829 117930995 -34606264 + (TG)n Simple_repeat Simple_repeat 2 167 0 1 1484 734 226 12 142 chr5 117931063 117931310 -34605949 - ID_B1 SINE B4 -8 216 2 1 1484 453 19 0 0 chr5 117931449 117931503 -34605756 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1484 212 322 0 33 chr5 117932581 117932642 -34604617 + (CGTG)n Simple_repeat Simple_repeat 4 62 0 1 1484 510 298 86 7 chr5 117932643 117932795 -34604464 - RSINE1 SINE B4 0 165 2 1 1484 528 239 113 34 chr5 117932806 117933044 -34604215 - L1MB8 LINE L1 -242 5936 5680 1 1484 744 197 13 13 chr5 117933193 117933342 -34603917 - RSINE1 SINE B4 -16 149 1 1 1484 243 253 76 0 chr5 117933645 117933724 -34603535 - B1F1 SINE Alu -52 97 13 1 1484 657 329 7 55 chr5 117934109 117934481 -34602778 + L1MA5A LINE L1 5512 5867 -430 1 1484 465 97 0 0 chr5 117934784 117934856 -34602403 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1484 652 208 147 5 chr5 117934895 117935079 -34602180 + ID_B1 SINE B4 3 212 -12 1 1484 768 290 13 18 chr5 117935644 117935869 -34601390 - MER58A DNA MER1_type 0 224 1 1 1484 180 0 0 0 chr5 117936240 117936260 -34600999 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1484 1945 65 0 0 chr5 117937042 117937302 -34599957 - L1_Mm LINE L1 -660 5223 4964 1 1484 27 29 0 0 chr5 117937304 117937338 -34599921 + AT_rich Low_complexity Low_complexity 1 34 0 1 1484 1192 61 0 7 chr5 117937344 117937492 -34599767 + B1_Mus2 SINE Alu 1 147 0 1 1484 308 340 49 14 chr5 117937719 117937862 -34599397 + MER5A DNA MER1_type 42 189 0 1 1484 470 277 96 6 chr5 117937910 117938066 -34599193 - MER20 DNA MER1_type -49 170 1 1 1484 527 264 16 0 chr5 117938941 117939066 -34598193 + RSINE1 SINE B4 21 147 -18 1 1484 1310 63 80 0 chr5 117939165 117939340 -34597919 + B2_Mm2 SINE B2 1 189 -6 1 1484 549 210 10 10 chr5 117939559 117939660 -34597599 + RSINE1 SINE B4 3 103 -62 1 1484 719 249 19 85 chr5 117940259 117940470 -34596789 - B3 SINE B2 0 216 20 1 1484 305 226 87 78 chr5 117940710 117940825 -34596434 - B2_Mm2 SINE B2 -6 189 74 1 1484 327 222 0 0 chr5 117940822 117940885 -34596374 - B4A SINE B4 -146 146 84 1 1484 1213 49 0 0 chr5 117941473 117941616 -34595643 - B1_Mus1 SINE Alu -5 143 1 1 1484 255 233 50 0 chr5 117942086 117942146 -34595113 + MIRb SINE MIR 180 242 -26 1 1484 989 163 89 30 chr5 117942401 117942603 -34594656 + ID_B1 SINE B4 4 217 -7 1 1484 273 259 304 0 chr5 117942722 117942834 -34594425 + B3 SINE B2 1 146 -70 1 1484 351 228 7 14 chr5 117942799 117942937 -34594322 - RMER17A LTR ERVK -302 449 313 1 1484 24 0 0 0 chr5 117944023 117944047 -34593212 + AT_rich Low_complexity Low_complexity 1 24 0 1 1484 183 392 55 23 chr5 117944443 117944571 -34592688 + MIR3 SINE MIR 8 139 -69 1 1484 1224 62 0 0 chr5 117944658 117944804 -34592455 + B1_Mus1 SINE Alu 1 146 -2 1 1484 221 333 0 14 chr5 117944852 117944925 -34592334 - ID4 SINE ID 0 83 12 1 1484 231 328 0 0 chr5 117944862 117944929 -34592330 - tRNA-Ala-GCA tRNA tRNA -7 68 2 1 1484 228 298 60 79 chr5 117945617 117945766 -34591493 + MIR3 SINE MIR 31 172 -36 1 1484 654 253 89 33 chr5 117945864 117946044 -34591215 + B3A SINE B2 1 190 -8 1 1484 322 293 0 0 chr5 117946079 117946154 -34591105 + PB1D10 SINE Alu 1 75 -42 1 1484 1242 54 0 0 chr5 117946154 117946301 -34590958 + B1_Mus1 SINE Alu 1 147 -1 1 1484 344 125 0 36 chr5 117946330 117946413 -34590846 + A-rich Low_complexity Low_complexity 1 80 0 1 1484 330 205 0 0 chr5 117946456 117946539 -34590720 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1484 423 319 43 18 chr5 117946803 117946966 -34590293 - B4A SINE B4 -93 199 33 1 1484 956 96 0 7 chr5 117947631 117947778 -34589481 + (TC)n Simple_repeat Simple_repeat 2 147 0 1 1484 1027 86 41 53 chr5 117947779 117947950 -34589309 - B2_Mm2 SINE B2 -26 169 1 1 1484 221 138 29 44 chr5 117948151 117948219 -34589040 + CT-rich Low_complexity Low_complexity 3 69 0 1 1484 938 171 154 5 chr5 117948233 117948421 -34588838 - B3 SINE B2 0 216 1 1 1484 297 0 0 0 chr5 117948567 117948600 -34588659 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1484 2195 279 101 53 chr5 117948824 117949281 -34587978 - RCHARR1 DNA MER1_type 0 974 489 1 1484 1042 120 6 6 chr5 117949281 117949457 -34587802 + (TTC)n Simple_repeat Simple_repeat 3 178 0 1 1484 2195 279 101 53 chr5 117949457 117949888 -34587371 - RCHARR1 DNA MER1_type -486 488 43 1 1484 359 399 70 10 chr5 117949913 117950212 -34587047 - L1MC LINE L1 -2077 5805 5489 1 1484 305 323 0 39 chr5 117950231 117950334 -34586925 - MLT1A1 LTR MaLR -2 406 308 1 1484 242 186 0 0 chr5 117950950 117950993 -34586266 + L2b LINE L2 3317 3359 -16 1 1484 504 303 33 0 chr5 117951312 117951434 -34585825 + B4 SINE B4 50 175 -117 1 1484 855 181 0 2 chr5 117951435 117951882 -34585377 + (CA)n Simple_repeat Simple_repeat 1 446 0 1 1484 857 280 78 111 chr5 117951992 117952378 -34584881 - MTE2a LTR MaLR -1 378 6 1 1484 207 0 0 0 chr5 117952431 117952454 -34584805 + (TCTA)n Simple_repeat Simple_repeat 2 24 0 1 1484 231 322 11 0 chr5 117952865 117952952 -34584307 + MIRb SINE MIR 54 141 -127 1 1484 246 346 0 0 chr5 117952975 117953053 -34584206 + ID4 SINE ID 4 81 -2 1 1484 390 326 11 11 chr5 117953057 117953234 -34584025 + (CA)n Simple_repeat Simple_repeat 1 177 0 1 1484 287 319 8 8 chr5 117953172 117953289 -34583970 + (CATATA)n Simple_repeat Simple_repeat 4 120 0 1 1484 1415 80 37 0 chr5 117953403 117953590 -34583669 - B2_Mm2 SINE B2 0 195 2 1 1484 343 133 67 0 chr5 117953657 117953717 -34583542 + HAL1-3A_ME LINE L1 1949 2012 -846 1 1484 225 0 0 0 chr5 117953740 117953765 -34583494 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1484 344 175 0 0 chr5 117953786 117953849 -34583410 + HAL1-3A_ME LINE L1 1976 2038 -820 1 1484 552 15 0 0 chr5 117953909 117953974 -34583285 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1484 508 288 332 35 chr5 117954061 117954371 -34582888 + MTD LTR MaLR 18 419 0 1 1484 22 35 0 0 chr5 117954685 117954714 -34582545 + AT_rich Low_complexity Low_complexity 1 29 0 1 1484 261 259 142 12 chr5 117955196 117955309 -34581950 - MIR3 SINE MIR -38 170 51 1 1484 273 128 0 0 chr5 117956082 117956129 -34581130 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1484 934 252 9 35 chr5 117956245 117956471 -34580788 + ID_B1 SINE B4 2 221 -3 1 1484 557 303 15 22 chr5 117956734 117956947 -34580312 + B4 SINE B4 38 254 -38 1 1484 243 236 27 14 chr5 117956958 117957031 -34580228 + B4A SINE B4 215 288 -4 1 1484 978 161 0 0 chr5 117957378 117957552 -34579707 + CT-rich Low_complexity Low_complexity 5 178 0 1 1484 1123 53 0 0 chr5 117957555 117957688 -34579571 - B1_Mus1 SINE Alu -14 134 2 1 1484 714 299 16 5 chr5 117958084 117958272 -34578987 + B3A SINE B2 2 191 -7 1 1484 758 155 16 0 chr5 117958324 117958453 -34578806 + B1_Mur2 SINE Alu 19 149 0 1 1484 614 278 79 68 chr5 117959058 117959324 -34577935 - B4A SINE B4 0 292 24 1 1484 229 109 43 0 chr5 117959855 117959901 -34577358 + C-rich Low_complexity Low_complexity 5 52 0 1 1484 398 20 20 0 chr5 117960265 117960316 -34576943 + (CAG)n Simple_repeat Simple_repeat 3 54 0 1 1484 225 260 5 0 chr5 117960450 117960520 -34576739 + T-rich Low_complexity Low_complexity 1 70 0 1 1484 1281 40 0 0 chr5 117960520 117960668 -34576591 - B1_Mus1 SINE Alu 0 148 1 1 1484 225 239 14 0 chr5 117960668 117960699 -34576560 + T-rich Low_complexity Low_complexity 3 34 0 1 1484 180 0 0 0 chr5 117961065 117961085 -34576174 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 1484 262 211 202 0 chr5 117962968 117963072 -34574187 + L2a LINE L2 3029 3153 -273 1 1484 388 354 45 6 chr5 117963155 117963334 -34573925 - MIR SINE MIR -58 204 19 1 1484 275 189 75 75 chr5 117963608 117963688 -34573571 + ID4_ SINE ID 2 81 -2 1 1484 1677 36 0 0 chr5 117963855 117964048 -34573211 - B2_Mm1t SINE B2 0 193 1 1 1485 246 62 0 0 chr5 117965029 117965061 -34572198 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1485 1001 54 0 0 chr5 117965061 117965190 -34572069 - B1_Mus1 SINE Alu -9 139 11 1 1485 433 323 18 58 chr5 117965190 117965249 -34572010 + MER58B DNA MER1_type 174 233 -108 1 1485 346 238 112 19 chr5 117965249 117965356 -34571903 - PB1D10 SINE Alu 0 117 1 1 1485 433 323 18 58 chr5 117965356 117965467 -34571792 + MER58B DNA MER1_type 234 337 -4 1 1485 196 272 105 19 chr5 117965702 117965788 -34571471 - MIRc SINE MIR -130 138 45 1 1485 2709 134 9 50 chr5 117965788 117966227 -34571032 - MTC LTR MaLR 0 421 1 1 1485 196 272 105 19 chr5 117966227 117966245 -34571014 - MIRc SINE MIR -224 44 26 1 1485 273 29 0 0 chr5 117967316 117967350 -34569909 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1485 216 308 0 15 chr5 117968612 117968678 -34568581 + ID4_ SINE ID 16 80 -3 1 1485 528 16 0 0 chr5 117968956 117969017 -34568242 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1485 205 357 0 0 chr5 117969059 117969143 -34568116 + (CATA)n Simple_repeat Simple_repeat 3 86 0 1 1485 387 73 0 0 chr5 117969182 117969237 -34568022 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 1485 631 234 70 79 chr5 117969928 117970142 -34567117 + B3 SINE B2 5 216 0 1 1485 220 132 36 36 chr5 117970397 117970452 -34566807 + CT-rich Low_complexity Low_complexity 1 55 0 1 1485 803 105 0 8 chr5 117970452 117970577 -34566682 + (TTCC)n Simple_repeat Simple_repeat 3 126 0 1 1485 423 0 0 0 chr5 117970633 117970680 -34566579 + (TGG)n Simple_repeat Simple_repeat 1 47 0 1 1485 204 67 0 0 chr5 117970680 117970710 -34566549 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1485 467 285 125 0 chr5 117971492 117971636 -34565623 + RSINE1 SINE B4 2 163 -2 1 1485 1336 106 17 0 chr5 117972615 117972795 -34564464 - B2_Mm2 SINE B2 -11 184 2 1 1485 333 0 0 0 chr5 117972832 117972869 -34564390 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1485 512 116 11 0 chr5 117972869 117972964 -34564295 + (GA)n Simple_repeat Simple_repeat 2 97 0 1 1485 455 245 39 0 chr5 117972979 117973081 -34564178 - RSINE1 SINE B4 -42 123 18 1 1485 326 23 23 0 chr5 117973854 117973897 -34563362 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1485 563 254 204 0 chr5 117973980 117974161 -34563098 + MER58A DNA MER1_type 1 218 -6 1 1485 1556 129 9 9 chr5 117974808 117975034 -34562225 - URR1A DNA MER1_type 0 226 1 1 1485 270 254 0 15 chr5 117975524 117975592 -34561667 + MIR SINE MIR 74 140 -122 1 1485 659 297 5 32 chr5 117975620 117975808 -34561451 - ID_B1 SINE B4 -41 183 1 1 1485 184 100 50 0 chr5 117975817 117975857 -34561402 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1 1485 622 320 32 18 chr5 117976007 117976290 -34560969 - B4A SINE B4 -5 287 1 1 1485 229 333 0 0 chr5 117977466 117977535 -34559724 + (TCTA)n Simple_repeat Simple_repeat 3 71 0 1 1485 1314 78 0 0 chr5 117977536 117977716 -34559543 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1 1485 187 289 16 0 chr5 117977718 117977846 -34559413 + (CCCA)n Simple_repeat Simple_repeat 3 132 0 1 1485 419 0 20 0 chr5 117978021 117978072 -34559187 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1485 492 321 65 20 chr5 117978351 117978551 -34558708 - MIRb SINE MIR -30 238 30 1 1485 501 214 0 0 chr5 117979486 117979640 -34557619 + (TG)n Simple_repeat Simple_repeat 2 155 0 1 1485 294 29 0 0 chr5 117979659 117979694 -34557565 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1485 440 232 0 0 chr5 117979846 117979945 -34557314 - PB1D10 SINE Alu -18 99 1 1 1485 447 19 0 0 chr5 117980249 117980301 -34556958 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1485 222 62 0 0 chr5 117980350 117980382 -34556877 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1485 1310 34 0 0 chr5 117980382 117980530 -34556729 - B1_Mus1 SINE Alu 0 148 1 1 1485 420 20 0 0 chr5 117980873 117980922 -34556337 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1485 275 253 101 0 chr5 117980922 117981001 -34556258 - PB1D10 SINE Alu -30 87 1 1 1485 330 80 0 0 chr5 117981182 117981232 -34556027 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1485 216 196 78 0 chr5 117982539 117982590 -34554669 - B4A SINE B4 -237 55 1 1 1485 453 19 0 0 chr5 117983446 117983500 -34553759 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1485 292 355 43 31 chr5 117983525 117983688 -34553571 - B4A SINE B4 0 292 128 1 1485 216 0 0 0 chr5 117983940 117983964 -34553295 + (CCCCG)n Simple_repeat Simple_repeat 1 24 0 1 1485 236 319 100 14 chr5 117984282 117984422 -34552837 - L2a LINE L2 -2 3424 3273 1 1485 257 323 131 6 chr5 117984590 117984758 -34552501 + MER20 DNA MER1_type 31 219 0 1 1485 299 235 14 20 chr5 117985108 117985196 -34552063 - MLT1J1 LTR MaLR -339 109 25 1 1485 1021 70 226 6 chr5 117985361 117985520 -34551739 - B2_Mm2 SINE B2 0 195 2 1 1485 191 238 0 0 chr5 117985562 117985604 -34551655 - MIRc SINE MIR -120 148 107 1 1485 208 154 19 19 chr5 117986134 117986187 -34551072 + CT-rich Low_complexity Low_complexity 1 53 0 1 1485 405 272 0 0 chr5 117986196 117986288 -34550971 - PB1D10 SINE Alu -5 112 21 1 1485 896 256 80 25 chr5 117987253 117987266 -34549993 - B4A SINE B4 0 292 280 1 1485 210 71 0 0 chr5 117987266 117987294 -34549965 + (CG)n Simple_repeat Simple_repeat 2 29 0 1 1485 896 256 80 25 chr5 117987294 117987556 -34549703 - B4A SINE B4 -13 279 2 1 1485 869 161 70 37 chr5 117987843 117988003 -34549256 + B2_Mm2 SINE B2 2 166 -29 1 1485 243 0 0 0 chr5 117988003 117988030 -34549229 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1485 869 161 70 37 chr5 117988030 117988056 -34549203 + B2_Mm2 SINE B2 167 193 -2 1 1485 1098 56 42 14 chr5 117988056 117988199 -34549060 + B1_Mus1 SINE Alu 1 148 0 1 1485 682 296 47 0 chr5 117988211 117988424 -34548835 - L1MA5 LINE L1 -63 6237 6015 1 1485 655 294 134 4 chr5 117988748 117988994 -34548265 + B4A SINE B4 13 290 -2 1 1485 217 213 32 32 chr5 117989010 117989073 -34548186 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 1 1485 606 217 6 12 chr5 117989078 117989246 -34548013 + (CA)n Simple_repeat Simple_repeat 1 167 0 1 1485 411 196 18 41 chr5 117989674 117989844 -34547415 + (TATG)n Simple_repeat Simple_repeat 2 167 0 1 1485 370 298 0 16 chr5 117989844 117990090 -34547169 + (TATATG)n Simple_repeat Simple_repeat 1 241 0 1 1485 359 244 33 0 chr5 117990214 117990304 -34546955 + B1F SINE Alu 2 94 -55 1 1485 624 261 63 50 chr5 117990828 117991050 -34546209 - B4 SINE B4 -54 238 14 1 1485 392 283 148 28 chr5 117991436 117991578 -34545681 - RSINE1 SINE B4 -4 161 3 1 1485 425 160 27 0 chr5 117991593 117991668 -34545591 - PB1D10 SINE Alu -11 106 30 1 1485 352 311 188 4 chr5 117992540 117992769 -34544490 - RMER15 LTR ERVL -44 531 261 1 1485 233 111 44 0 chr5 117992830 117992875 -34544384 + CT-rich Low_complexity Low_complexity 2 48 0 1 1485 191 233 23 0 chr5 117992934 117992977 -34544282 - MIRc SINE MIR -105 163 120 1 1485 479 326 7 0 chr5 117993024 117993159 -34544100 - RSINE1 SINE B4 -27 138 3 1 1485 352 352 72 23 chr5 117993306 117993527 -34543732 + MLT1D LTR MaLR 274 505 0 1 1485 475 217 92 0 chr5 117993660 117993780 -34543479 - B1F1 SINE Alu -18 131 1 1 1485 388 266 0 17 chr5 117993904 117994019 -34543240 - ID_B1 SINE B4 -31 193 81 1 1485 21 0 0 0 chr5 117995859 117995880 -34541379 + AT_rich Low_complexity Low_complexity 1 21 0 1 1485 228 369 47 0 chr5 117995894 117996043 -34541216 - L1MB4 LINE L1 -1 6179 6024 1 1485 673 232 7 0 chr5 117996061 117996199 -34541060 - ID_B1 SINE B4 0 224 86 1 1485 404 200 55 11 chr5 117996418 117996509 -34540750 - RSINE1 SINE B4 -68 97 3 1 1485 402 85 0 0 chr5 117997455 117997514 -34539745 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 1 1485 1242 54 0 0 chr5 117997526 117997673 -34539586 - B1_Mus2 SINE Alu 0 147 1 1 1485 501 383 98 0 chr5 117997748 117997983 -34539276 + Tigger7 DNA MER2_type 24 281 -2210 1 1485 519 335 68 52 chr5 117998044 117998353 -34538906 + Tigger7 DNA MER2_type 201 514 -1977 1 1485 330 260 0 0 chr5 117999143 117999270 -34537989 + (ATGGTG)n Simple_repeat Simple_repeat 2 128 0 1 1485 545 342 92 15 chr5 117999286 117999613 -34537646 + L1MB7 LINE L1 5506 5857 -327 1 1485 252 366 39 13 chr5 117999674 117999829 -34537430 + L1MB7 LINE L1 5972 6130 -44 1 1485 405 0 0 0 chr5 118000171 118000216 -34537043 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1485 246 331 38 61 chr5 118000257 118000389 -34536870 - B4A SINE B4 -94 198 70 2 1485 1484 171 68 86 chr5 118000422 118000761 -34536498 + MTD LTR MaLR 74 406 -13 3 1485 233 263 0 17 chr5 118000774 118000832 -34536427 - B4 SINE B4 -235 57 1 2 1485 21 0 0 0 chr5 118000851 118000872 -34536387 + AT_rich Low_complexity Low_complexity 1 21 0 4 1485 213 121 0 0 chr5 118001427 118001460 -34535799 + (A)n Simple_repeat Simple_repeat 1 33 0 5 1485 746 230 22 27 chr5 118002229 118002412 -34534847 - B3A SINE B2 -16 182 1 6 1485 546 159 83 18 chr5 118002455 118002564 -34534695 - PB1D9 SINE Alu -3 117 2 7 1485 269 272 71 99 chr5 118002790 118003002 -34534257 - ID_B1 SINE B4 -1 291 86 8 1485 227 125 0 40 chr5 118003461 118003511 -34533748 + C-rich Low_complexity Low_complexity 1 48 0 9 1485 513 0 0 0 chr5 118003634 118003691 -34533568 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 1 1485 945 151 7 0 chr5 118003691 118003837 -34533422 - B1_Mur3 SINE Alu -2 147 1 1 1485 475 296 53 5 chr5 118003914 118004121 -34533138 - L1MD2 LINE L1 -6 6353 6137 1 1485 269 283 216 19 chr5 118005909 118006071 -34531188 - Charlie5 DNA MER1_type -30 2594 2401 1 1485 227 307 82 24 chr5 118006398 118006605 -34530654 + L1MB4 LINE L1 5955 6173 -7 1 1485 359 288 115 14 chr5 118006656 118006804 -34530455 - MER58A DNA MER1_type -34 190 28 1 1485 202 106 0 60 chr5 118007123 118007173 -34530086 + (TTAAA)n Simple_repeat Simple_repeat 5 51 0 1 1485 275 175 169 36 chr5 118007175 118007258 -34530001 - Lx9 LINE L1 -19 7625 7532 1 1485 32 75 0 0 chr5 118007259 118007326 -34529933 + AT_rich Low_complexity Low_complexity 1 67 0 1 1485 263 182 32 91 chr5 118007333 118007520 -34529739 + (TTAAA)n Simple_repeat Simple_repeat 5 180 0 1 1485 1113 167 0 0 chr5 118007610 118007796 -34529463 - Lx9 LINE L1 -162 7482 7297 1 1485 301 297 23 27 chr5 118008286 118008435 -34528824 + MER112 DNA MER1_type 4 160 -101 2 1485 491 244 8 17 chr5 118008444 118008681 -34528578 + (CATATA)n Simple_repeat Simple_repeat 1 234 0 2 1485 722 240 33 52 chr5 118009160 118009371 -34527888 + ID_B1 SINE B4 2 208 -16 2 1485 271 196 27 68 chr5 118009371 118009509 -34527750 + A-rich Low_complexity Low_complexity 13 144 0 2 1485 551 221 7 0 chr5 118009624 118009749 -34527510 + CT-rich Low_complexity Low_complexity 17 142 0 2 1485 1063 114 6 6 chr5 118009749 118009925 -34527334 + (TTTC)n Simple_repeat Simple_repeat 4 179 0 2 1485 551 221 7 0 chr5 118009925 118009939 -34527320 + polypyrimidine Low_complexity Low_complexity 3 16 0 2 1485 660 48 0 0 chr5 118009942 118010026 -34527233 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 2 1485 460 240 9 91 chr5 118010172 118010282 -34526977 - RSINE1 SINE B4 0 165 65 2 1485 267 244 62 37 chr5 118010343 118010424 -34526835 + B4A SINE B4 208 290 -2 2 1485 487 311 0 32 chr5 118010432 118010672 -34526587 + (CA)n Simple_repeat Simple_repeat 1 232 0 3 1485 330 281 0 0 chr5 118010687 118010840 -34526419 + (CA)n Simple_repeat Simple_repeat 2 154 0 3 1485 269 281 0 14 chr5 118010873 118011014 -34526245 + (CATATA)n Simple_repeat Simple_repeat 6 144 0 3 1485 635 46 11 0 chr5 118011348 118011435 -34525824 + (TC)n Simple_repeat Simple_repeat 2 89 0 3 1485 199 247 22 0 chr5 118011435 118011524 -34525735 + (TG)n Simple_repeat Simple_repeat 1 91 0 3 1485 438 278 142 35 chr5 118011536 118011790 -34525469 - B4A SINE B4 -10 282 2 3 1485 304 330 65 27 chr5 118012001 118012185 -34525074 + MamRep434 DNA TcMar 41 231 -195 3 1485 323 288 106 14 chr5 118012726 118012867 -34524392 - HAL1-3A_ME LINE L1 -421 2437 2284 3 1485 350 303 82 27 chr5 118012861 118013007 -34524252 - HAL1-3A_ME LINE L1 -420 2438 2285 3 1485 279 304 25 0 chr5 118013009 118013088 -34524171 + CT-rich Low_complexity Low_complexity 2 82 0 3 1485 216 233 23 0 chr5 118013097 118013140 -34524119 - ID4 SINE ID -10 73 30 3 1485 183 42 0 0 chr5 118013249 118013273 -34523986 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3 1485 211 258 0 46 chr5 118013613 118013678 -34523581 - ID4_ SINE ID -1 82 21 4 1485 282 73 0 0 chr5 118013910 118013951 -34523308 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1485 673 235 120 102 chr5 118014265 118014549 -34522710 - B4 SINE B4 -2 290 2 4 1485 412 188 0 0 chr5 118014860 118014929 -34522330 + RSINE1 SINE B4 67 135 -30 4 1485 798 41 0 0 chr5 118014944 118015042 -34522217 + (GAAA)n Simple_repeat Simple_repeat 1 98 0 4 1485 674 239 14 0 chr5 118015094 118015236 -34522023 + B1F SINE Alu 5 148 -1 4 1485 536 277 87 36 chr5 118015240 118015517 -34521742 + B4A SINE B4 2 292 0 4 1485 606 225 0 4 chr5 118015534 118015999 -34521260 + (CA)n Simple_repeat Simple_repeat 1 462 0 4 1485 309 26 0 0 chr5 118015999 118016037 -34521222 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1485 669 47 0 0 chr5 118016039 118016124 -34521135 + (CA)n Simple_repeat Simple_repeat 1 85 0 4 1485 740 299 60 32 chr5 118017005 118017229 -34520030 - MTEb LTR MaLR -9 370 139 5 1485 1379 81 27 0 chr5 118017229 118017414 -34519845 + B2_Mm2 SINE B2 4 193 -2 5 1485 740 299 60 32 chr5 118017414 118017441 -34519818 - MTEb LTR MaLR -241 138 112 5 1485 459 152 0 0 chr5 118017774 118017853 -34519406 + (CCTA)n Simple_repeat Simple_repeat 1 79 0 5 1485 224 227 0 0 chr5 118017861 118017905 -34519354 + (TATATG)n Simple_repeat Simple_repeat 1 44 0 5 1485 243 125 0 0 chr5 118018093 118018133 -34519126 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1485 542 256 163 58 chr5 118018191 118018448 -34518811 - B4A SINE B4 0 292 9 5 1485 667 320 18 18 chr5 118018640 118018863 -34518396 - MER58A DNA MER1_type 0 224 2 5 1485 351 0 0 0 chr5 118018966 118019005 -34518254 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1485 839 109 7 0 chr5 118019005 118019151 -34518108 + (GA)n Simple_repeat Simple_repeat 1 148 0 5 1485 276 30 0 0 chr5 118020103 118020136 -34517123 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 5 1485 974 281 75 30 chr5 118020329 118020690 -34516569 - MTE2a LTR MaLR -16 403 21 6 1485 292 22 44 0 chr5 118020696 118020741 -34516518 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1485 622 234 0 46 chr5 118021897 118022027 -34515232 + RSINE1 SINE B4 3 126 -39 6 1485 492 241 111 8 chr5 118022093 118022210 -34515049 - B4A SINE B4 -162 130 2 6 1485 483 324 40 9 chr5 118022213 118022437 -34514822 - L1ME2 LINE L1 -55 6109 5879 6 1485 332 300 45 96 chr5 118022777 118022954 -34514305 - MLT1C LTR MaLR -270 197 30 6 1485 219 69 0 0 chr5 118023044 118023073 -34514186 + (TA)n Simple_repeat Simple_repeat 2 30 0 6 1485 594 279 44 31 chr5 118023088 118023247 -34514012 - RSINE1 SINE B4 -2 163 3 6 1485 238 319 69 26 chr5 118023377 118023609 -34513650 - L1MC LINE L1 -926 5220 4979 6 1485 1789 202 87 19 chr5 118023892 118024271 -34512988 - MTD LTR MaLR -14 405 1 6 1485 771 104 0 0 chr5 118024476 118024591 -34512668 + (GA)n Simple_repeat Simple_repeat 1 115 0 7 1485 216 67 0 0 chr5 118024670 118024700 -34512559 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 7 1485 589 270 13 39 chr5 118024705 118024859 -34512400 - RSINE1 SINE B4 -1 164 15 7 1485 198 0 0 0 chr5 118024859 118024881 -34512378 + (TC)n Simple_repeat Simple_repeat 1 22 0 7 1485 1500 218 84 19 chr5 118025439 118025818 -34511441 + MTD LTR MaLR 5 408 -11 7 1485 222 267 16 32 chr5 118026035 118026097 -34511162 - PB1D10 SINE Alu -5 112 52 7 1485 506 218 119 8 chr5 118026173 118026307 -34510952 - B1F2 SINE Alu 0 149 1 7 1485 458 274 99 31 chr5 118026570 118026756 -34510503 + MIRb SINE MIR 27 227 -41 7 1485 447 275 179 8 chr5 118026764 118027009 -34510250 - B4A SINE B4 -5 287 1 7 1485 892 211 53 27 chr5 118028354 118028574 -34508685 - ID_B1 SINE B4 -60 232 10 7 1485 887 136 216 5 chr5 118028639 118028824 -34508435 - URR1B DNA MER1_type 0 225 2 8 1485 2405 139 79 31 chr5 118029240 118029685 -34507574 + RMER4A LTR ERVK 1 466 0 8 1485 800 265 95 117 chr5 118030092 118030502 -34506757 - MTD LTR MaLR -14 405 5 8 1485 246 264 54 11 chr5 118030962 118031054 -34506205 - MLT1K LTR MaLR -111 484 389 8 1485 26 0 0 0 chr5 118031282 118031308 -34505951 + AT_rich Low_complexity Low_complexity 1 26 0 8 1485 324 0 0 0 chr5 118032464 118032500 -34504759 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1485 216 0 0 0 chr5 118032761 118032785 -34504474 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1485 504 48 0 0 chr5 118032785 118032847 -34504412 + (GA)n Simple_repeat Simple_repeat 1 63 0 8 1485 301 323 44 31 chr5 118032871 118033031 -34504228 - MIRc SINE MIR -43 225 64 8 1485 471 262 34 0 chr5 118033174 118033297 -34503962 + B3A SINE B2 77 205 -11 8 1485 766 172 23 0 chr5 118033308 118033482 -34503777 + (CATA)n Simple_repeat Simple_repeat 1 178 0 9 1485 193 304 0 0 chr5 118033667 118033713 -34503546 - L2c LINE L2 -9 3378 3333 9 1485 216 253 40 22 chr5 118033857 118033969 -34503290 - L2c LINE L2 -252 3135 3021 9 1485 265 316 0 17 chr5 118034022 118034141 -34503118 + (TGGA)n Simple_repeat Simple_repeat 3 119 0 9 1485 516 181 386 18 chr5 118034141 118034304 -34502955 - MTD LTR MaLR 0 419 197 9 1485 549 0 0 0 chr5 118034304 118034365 -34502894 + (CTG)n Simple_repeat Simple_repeat 1 61 0 9 1485 1105 95 6 6 chr5 118034365 118034535 -34502724 + (TTC)n Simple_repeat Simple_repeat 3 172 0 9 1485 360 111 0 0 chr5 118034542 118034596 -34502663 + (TCC)n Simple_repeat Simple_repeat 3 56 0 9 1485 830 146 0 8 chr5 118034627 118034758 -34502501 - B2_Mm2 SINE B2 -65 130 1 9 1485 863 185 114 21 chr5 118034758 118034950 -34502309 - MTD LTR MaLR -209 210 1 9 1485 191 247 38 88 chr5 118035667 118035747 -34501512 + MIRb SINE MIR 49 124 -144 9 1485 335 290 35 0 chr5 118035903 118036048 -34501211 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 9 1485 328 254 11 0 chr5 118036060 118036237 -34501022 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 9 1485 380 289 15 7 chr5 118036242 118036378 -34500881 + GA-rich Low_complexity Low_complexity 3 139 0 1 1485 226 276 35 0 chr5 118036873 118036931 -34500328 - ORR1D2 LTR MaLR -310 60 1 1 1485 467 258 160 23 chr5 118036974 118037105 -34500154 + RSINE1 SINE B4 6 154 -11 1 1485 2443 150 30 10 chr5 118037198 118037603 -34499656 - MTC LTR MaLR -8 413 1 1 1485 426 143 0 0 chr5 118037667 118037744 -34499515 + (CA)n Simple_repeat Simple_repeat 1 77 0 1 1485 271 246 40 40 chr5 118038723 118038738 -34498521 + B4A SINE B4 71 85 -207 1 1485 413 290 0 29 chr5 118038738 118038841 -34498418 + PB1D10 SINE Alu 4 103 -14 1 1485 646 201 188 6 chr5 118038858 118039028 -34498231 + B3 SINE B2 1 201 -15 1 1485 633 127 19 0 chr5 118039149 118039306 -34497953 + (CA)n Simple_repeat Simple_repeat 1 160 0 1 1485 239 335 116 0 chr5 118039702 118039875 -34497384 + RMER15 LTR ERVL 360 552 -23 1 1485 212 255 22 32 chr5 118039958 118040029 -34497230 + MIRc SINE MIR 90 165 -111 1 1485 351 0 0 0 chr5 118040228 118040267 -34496992 + (CCCCAG)n Simple_repeat Simple_repeat 2 40 0 1 1485 217 278 134 60 chr5 118040298 118040432 -34496827 - MIRm SINE MIR -122 154 11 1 1485 810 278 47 19 chr5 118040751 118041075 -34496184 - MTD LTR MaLR 0 419 49 1 1485 190 138 0 0 chr5 118041719 118041748 -34495511 - L2b LINE L2 -322 3053 3025 1 1485 198 0 0 0 chr5 118041844 118041866 -34495393 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1485 276 252 106 32 chr5 118041866 118041989 -34495270 - MLT1D LTR MaLR -25 365 234 1 1485 291 310 48 79 chr5 118042063 118042252 -34495007 - MLT1D LTR MaLR -274 231 49 1 1485 690 259 25 12 chr5 118042400 118042560 -34494699 - RSINE1 SINE B4 -2 163 2 1 1485 266 125 21 0 chr5 118042695 118042743 -34494516 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1485 214 271 9 9 chr5 118042838 118042946 -34494313 + (TG)n Simple_repeat Simple_repeat 1 108 0 1 1485 1011 218 119 35 chr5 118043014 118043275 -34493984 - B4 SINE B4 -7 285 3 1 1485 521 193 114 0 chr5 118044362 118044476 -34492783 - B3A SINE B2 -42 156 30 1 1485 214 222 18 36 chr5 118044430 118044486 -34492773 - ID4 SINE ID -9 74 20 1 1485 823 175 16 0 chr5 118044482 118044608 -34492651 - B1_Mur4 SINE Alu -22 128 1 1 1485 365 200 0 0 chr5 118044609 118044674 -34492585 + B3 SINE B2 9 73 -143 1 1485 252 128 0 0 chr5 118044683 118044722 -34492537 - B3A SINE B2 -158 40 2 1 1485 881 144 11 11 chr5 118044753 118044929 -34492330 + CT-rich Low_complexity Low_complexity 1 176 0 1 1485 612 51 0 12 chr5 118044929 118045009 -34492250 + (TC)n Simple_repeat Simple_repeat 1 79 0 1 1485 515 155 269 0 chr5 118045009 118045125 -34492134 - B1_Mur2 SINE Alu -6 141 1 1 1485 1076 268 138 12 chr5 118046595 118046928 -34490331 - MTEa LTR MaLR 0 379 5 1 1485 266 286 17 0 chr5 118047143 118047262 -34489997 + (TATATG)n Simple_repeat Simple_repeat 6 126 0 1 1485 689 204 0 11 chr5 118047275 118047453 -34489806 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 1 1485 763 135 11 43 chr5 118047485 118047671 -34489588 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1485 493 290 145 0 chr5 118047681 118047943 -34489316 - L1MB5 LINE L1 -1 6173 5874 1 1485 500 327 42 0 chr5 118048015 118048229 -34489030 - L1MB5 LINE L1 -446 5734 5512 1 1485 263 227 48 67 chr5 118048509 118048613 -34488646 - L1MB5 LINE L1 -763 5417 5316 1 1485 237 83 0 0 chr5 118048648 118048684 -34488575 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 1 1485 227 398 0 0 chr5 118049472 118049638 -34487621 + CT-rich Low_complexity Low_complexity 1 166 0 1 1485 225 303 53 0 chr5 118050997 118051073 -34486186 + MER58A DNA MER1_type 3 82 -142 1 1485 1048 257 60 133 chr5 118051077 118051512 -34485747 + MTD LTR MaLR 1 403 -16 1 1485 557 291 40 20 chr5 118051530 118051681 -34485578 + MER58A DNA MER1_type 71 224 0 1 1485 207 164 0 47 chr5 118052358 118052422 -34484837 + GA-rich Low_complexity Low_complexity 2 62 0 1 1485 323 352 8 54 chr5 118052694 118052823 -34484436 + RMER10B LTR ERVL 269 391 -7 1 1485 682 240 0 0 chr5 118053460 118053585 -34483674 - B1_Mur4 SINE Alu -20 130 6 1 1485 386 266 22 88 chr5 118053484 118053620 -34483639 - MT2B LTR ERVL -343 258 132 1 1485 360 0 0 0 chr5 118053871 118053911 -34483348 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1485 1993 199 111 12 chr5 118053956 118054387 -34482872 + RMER13A LTR ERVK 1 474 -386 1 1485 477 250 5 125 chr5 118054360 118054552 -34482707 + RMER13A LTR ERVK 692 860 0 1 1485 721 227 198 56 chr5 118054766 118055018 -34482241 - B4 SINE B4 -3 289 2 1 1485 382 302 7 79 chr5 118055257 118055397 -34481862 + MIRb SINE MIR 5 141 -127 1 1485 279 0 0 0 chr5 118056256 118056287 -34480972 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1485 282 56 0 0 chr5 118056628 118056664 -34480595 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1485 196 341 43 21 chr5 118057038 118057131 -34480128 - L2 LINE L2 -3145 274 180 1 1485 246 309 20 107 chr5 118057300 118057496 -34479763 + YREP_Mm Unknown Unknown 133 311 -1501 1 1485 1120 199 9 5 chr5 118057363 118057575 -34479684 - ID_B1 SINE B4 -5 219 7 1 1485 3009 60 8 2 chr5 118058516 118058914 -34478345 - MTB LTR MaLR 0 400 1 1 1485 324 224 15 0 chr5 118058938 118059005 -34478254 - ID4 SINE ID -15 68 1 1 1485 239 222 0 0 chr5 118059005 118059050 -34478209 - ZP3AR Satellite Satellite -117 95 51 1 1485 417 86 0 0 chr5 118059114 118059172 -34478087 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1485 614 238 27 27 chr5 118059176 118059323 -34477936 - RSINE1 SINE B4 -17 148 2 1 1485 242 225 56 11 chr5 118059941 118060031 -34477228 + GA-rich Low_complexity Low_complexity 2 95 0 1 1485 396 40 0 0 chr5 118060230 118060280 -34476979 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1485 588 221 0 24 chr5 118060280 118060405 -34476854 - RSINE1 SINE B4 -41 124 3 1 1485 870 154 0 7 chr5 118060990 118061140 -34476119 + B1_Mur3 SINE Alu 1 149 0 1 1485 286 306 107 9 chr5 118061627 118061739 -34475520 - MIRb SINE MIR -73 195 73 1 1485 292 351 103 44 chr5 118061828 118062595 -34474664 - L1MB5 LINE L1 -67 6107 5296 1 1485 888 225 8 3 chr5 118063136 118063514 -34473745 + (TCCA)n Simple_repeat Simple_repeat 1 380 0 1 1485 408 282 24 24 chr5 118063470 118063637 -34473622 + CT-rich Low_complexity Low_complexity 5 171 0 1 1485 192 184 26 0 chr5 118064102 118064140 -34473119 - MIRc SINE MIR -118 150 112 1 1485 351 0 0 0 chr5 118064428 118064467 -34472792 + (T)n Simple_repeat Simple_repeat 1 39 0 1 1485 236 323 71 0 chr5 118064907 118065006 -34472253 - L2a LINE L2 -26 3400 3295 1 1485 197 307 11 33 chr5 118065302 118065393 -34471866 - L2a LINE L2 -214 3161 3073 1 1485 404 312 0 9 chr5 118065955 118066065 -34471194 - PB1D10 SINE Alu -2 115 7 1 1485 1982 157 73 16 chr5 118066169 118066555 -34470704 - MTD LTR MaLR -15 404 12 1 1485 207 309 191 0 chr5 118067840 118067924 -34469335 - MIRb SINE MIR -111 157 58 1 1485 232 211 17 34 chr5 118067927 118067986 -34469273 + CT-rich Low_complexity Low_complexity 3 60 0 1 1485 438 20 0 0 chr5 118067996 118068047 -34469212 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1485 608 113 0 20 chr5 118068047 118068146 -34469113 - B1_Mur2 SINE Alu -13 136 40 1 1485 269 340 33 66 chr5 118068146 118068258 -34469001 - ID_B1 SINE B4 -13 211 8 1 1485 186 214 23 45 chr5 118068892 118068936 -34468323 + L2b LINE L2 3321 3363 -12 1 1485 206 32 32 0 chr5 118069187 118069218 -34468041 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1485 572 186 25 17 chr5 118069371 118069491 -34467768 + B1F SINE Alu 7 127 -22 1 1485 353 238 0 0 chr5 118069486 118069549 -34467710 + B1F SINE Alu 65 127 -22 1 1485 370 206 0 0 chr5 118069515 118069578 -34467681 + B1F1 SINE Alu 65 127 -22 1 1485 378 206 0 0 chr5 118069573 118069636 -34467623 + B1F SINE Alu 65 127 -22 1 1485 229 283 0 0 chr5 118069605 118069658 -34467601 + B1_Mm SINE Alu 66 118 -29 1 1485 2002 119 11 19 chr5 118070820 118071204 -34466055 + ORR1A2 LTR MaLR 1 394 0 1 1485 273 20 39 39 chr5 118071220 118071271 -34465988 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 1 1485 214 271 82 0 chr5 118071625 118071710 -34465549 - MIR SINE MIR -106 156 65 1 1485 221 0 0 33 chr5 118071761 118071791 -34465468 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1485 614 110 40 14 chr5 118072916 118073064 -34464195 + (TCTCTG)n Simple_repeat Simple_repeat 2 153 0 1 1485 316 287 0 47 chr5 118073590 118073696 -34463563 + PB1D10 SINE Alu 14 114 -3 1 1485 477 324 49 43 chr5 118074682 118074936 -34462323 + B4A SINE B4 2 268 -24 1 1485 366 23 0 0 chr5 118075109 118075152 -34462107 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1485 1082 15 0 0 chr5 118075152 118075285 -34461974 - B1_Mm SINE Alu -8 139 7 1 1485 422 239 6 127 chr5 118075190 118075348 -34461911 - MT2B LTR ERVL -345 256 118 1 1485 321 168 38 25 chr5 118075642 118075801 -34461458 + (CAGAGA)n Simple_repeat Simple_repeat 2 162 0 1 1485 208 119 48 0 chr5 118076369 118076411 -34460848 + (TCTG)n Simple_repeat Simple_repeat 4 47 0 1 1485 446 345 76 15 chr5 118076455 118076652 -34460607 - B4 SINE B4 -1 291 83 1 1485 253 279 15 0 chr5 118076660 118076671 -34460588 - B4 SINE B4 -136 156 124 1 1485 292 180 0 0 chr5 118076671 118076721 -34460538 - B1_Mus1 SINE Alu -87 61 12 1 1485 253 279 15 0 chr5 118076721 118076735 -34460524 - B4 SINE B4 -136 123 73 1 1485 950 250 29 0 chr5 118077433 118077641 -34459618 + ID_B1 SINE B4 6 219 -5 1 1485 211 211 96 0 chr5 118077841 118077893 -34459366 - B3A SINE B2 -53 145 89 1 1485 288 321 55 9 chr5 118077891 118078001 -34459258 - RSINE1 SINE B4 -46 119 5 1 1485 338 117 0 32 chr5 118078290 118078352 -34458907 + (TCTCCC)n Simple_repeat Simple_repeat 3 62 0 1 1485 309 232 63 0 chr5 118078522 118078617 -34458642 + ORR1E LTR MaLR 20 120 -239 1 1485 225 132 0 0 chr5 118078639 118078677 -34458582 + (TGGGGG)n Simple_repeat Simple_repeat 1 38 0 1 1485 840 281 130 18 chr5 118078833 118079163 -34458096 - MTEa LTR MaLR 0 379 13 2 1485 1334 246 30 38 chr5 118079826 118080197 -34457062 - MTEa LTR MaLR 0 379 12 2 1485 2147 71 3 155 chr5 118080998 118081384 -34455875 - ORR1A2 LTR MaLR 0 327 1 2 1485 276 296 11 0 chr5 118081444 118081532 -34455727 - L1MC4a LINE L1 -91 7791 7703 2 1485 374 322 7 53 chr5 118081584 118081735 -34455524 - MIRb SINE MIR -99 169 26 2 1485 341 277 26 161 chr5 118082174 118082329 -34454930 - B1F SINE Alu -15 134 1 2 1485 911 224 42 0 chr5 118082329 118082407 -34454852 - ID SINE ID -138 86 1 2 1485 363 329 62 20 chr5 118082538 118082684 -34454575 + MIRb SINE MIR 22 173 -95 2 1485 429 315 96 48 chr5 118082687 118082964 -34454295 + L1MB7 LINE L1 5865 6158 -26 2 1485 2257 83 6 55 chr5 118082964 118083308 -34453951 - ORR1A2 LTR MaLR 0 327 1 2 1485 429 315 96 48 chr5 118083308 118083323 -34453936 + L1MB7 LINE L1 6159 6171 -13 2 1485 180 0 0 0 chr5 118083328 118083348 -34453911 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2 1485 207 0 0 0 chr5 118083349 118083372 -34453887 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2 1485 989 93 0 21 chr5 118083372 118083514 -34453745 - B1_Mus1 SINE Alu -8 140 2 2 1485 384 293 24 24 chr5 118083664 118083790 -34453469 + RSINE1 SINE B4 18 143 -22 2 1485 499 309 74 11 chr5 118083838 118084028 -34453231 + Lx8 LINE L1 6925 7126 -347 2 1485 719 247 0 23 chr5 118084440 118084614 -34452645 + Lx8 LINE L1 7189 7358 -115 2 1485 298 331 40 51 chr5 118084908 118085083 -34452176 + L1MEg LINE L1 52 224 -5860 2 1485 875 316 88 19 chr5 118085126 118085545 -34451714 + L1MEg LINE L1 205 652 -5432 2 1485 341 281 28 37 chr5 118085562 118085669 -34451590 + L1MEg LINE L1 615 720 -5364 2 1485 414 340 80 11 chr5 118086059 118086422 -34450837 + L1MEg LINE L1 700 1087 -4997 2 1485 617 284 88 13 chr5 118086447 118086675 -34450584 + B4A SINE B4 48 292 0 2 1485 209 33 33 0 chr5 118086864 118086894 -34450365 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2 1485 645 14 0 0 chr5 118087430 118087504 -34449755 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 1485 441 0 0 0 chr5 118087504 118087552 -34449707 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1485 243 116 0 23 chr5 118087693 118087737 -34449522 - BC1_Mm scRNA scRNA -75 77 35 2 1485 278 377 17 26 chr5 118087773 118087890 -34449369 - B4A SINE B4 -169 123 8 2 1485 433 188 25 12 chr5 118088276 118088357 -34448902 + ID SINE ID 1 82 -142 2 1485 499 327 66 18 chr5 118088364 118088638 -34448621 - MLT1F LTR MaLR -50 498 212 2 1485 1165 148 9 41 chr5 118088838 118089057 -34448202 - URR1B DNA MER1_type -13 212 1 2 1485 456 289 10 86 chr5 118090063 118090260 -34446999 + B3A SINE B2 1 182 -16 2 1485 612 127 36 18 chr5 118090260 118090428 -34446831 + (CA)n Simple_repeat Simple_repeat 1 171 0 2 1485 432 195 12 6 chr5 118090439 118090609 -34446650 + (CA)n Simple_repeat Simple_repeat 1 171 0 2 1485 389 152 0 9 chr5 118090652 118090758 -34446501 + (CA)n Simple_repeat Simple_repeat 1 105 0 2 1485 910 227 108 16 chr5 118090890 118091141 -34446118 + MTEa LTR MaLR 96 369 -10 2 1485 369 333 22 29 chr5 118091267 118091406 -34445853 + Tigger5 DNA MER2_type 100 237 -2169 2 1485 242 305 0 0 chr5 118091432 118091491 -34445768 + Tigger5 DNA MER2_type 2347 2405 -1 2 1485 570 294 123 34 chr5 118091514 118092055 -34445204 - LTR16D LTR ERVL 0 651 25 2 1485 261 0 0 0 chr5 118092451 118092480 -34444779 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2 1485 414 0 0 0 chr5 118092566 118092612 -34444647 + (TTTTA)n Simple_repeat Simple_repeat 5 50 0 2 1485 1169 58 0 0 chr5 118092612 118092766 -34444493 - B2_Mm2 SINE B2 -40 155 2 2 1485 198 71 0 0 chr5 118092828 118092856 -34444403 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1485 444 264 47 23 chr5 118093698 118093826 -34443433 + B1F SINE Alu 18 148 -1 2 1485 762 269 9 33 chr5 118093967 118094182 -34443077 + ID_B1 SINE B4 27 214 -78 2 1485 258 266 31 31 chr5 118094208 118094305 -34442954 - Cheshire DNA MER1_type -2231 189 93 2 1485 238 311 46 0 chr5 118094309 118094414 -34442845 - MIR SINE MIR -74 188 84 2 1485 722 250 22 0 chr5 118094986 118095166 -34442093 - B4A SINE B4 -104 188 5 2 1485 422 250 0 2 chr5 118095575 118095680 -34441579 + L1MB8 LINE L1 5776 5878 -311 2 185 679 258 20 35 chr5 118095681 118095882 -34441377 + B3 SINE B2 5 202 -14 2 1486 267 155 52 0 chr5 118095895 118095953 -34441306 + L1MB7 LINE L1 5861 5921 -263 2 1486 1032 88 0 33 chr5 118096337 118096489 -34440770 + B1_Mus2 SINE Alu 1 147 0 2 1486 327 271 50 85 chr5 118096610 118096751 -34440508 + B1F1 SINE Alu 5 140 -9 2 1486 399 89 0 0 chr5 118096758 118096814 -34440445 + (GGA)n Simple_repeat Simple_repeat 3 58 0 2 1486 680 156 8 0 chr5 118097012 118097134 -34440125 + RSINE1 SINE B4 2 124 -41 2 1486 414 0 0 0 chr5 118097134 118097180 -34440079 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1486 181 247 17 171 chr5 118097267 118097384 -34439875 - MIRc SINE MIR -126 142 44 2 1486 24 0 0 0 chr5 118098194 118098218 -34439041 + GC_rich Low_complexity Low_complexity 1 24 0 2 1486 501 310 12 31 chr5 118098869 118099032 -34438227 - B4 SINE B4 -1 291 132 2 1486 377 270 9 9 chr5 118099195 118099314 -34437945 + B1F SINE Alu 14 132 -17 2 1486 306 344 0 0 chr5 118099721 118099817 -34437442 - B1F SINE Alu -52 97 2 2 1486 243 278 13 89 chr5 118100044 118100123 -34437136 - MLT1K LTR MaLR -323 272 200 2 1486 420 238 0 135 chr5 118100362 118100532 -34436727 - MTEb LTR MaLR 0 379 233 2 1486 317 252 21 27 chr5 118100553 118100661 -34436598 - MTEb LTR MaLR -276 108 4 2 1486 180 0 0 0 chr5 118100788 118100808 -34436451 + (GGGTG)n Simple_repeat Simple_repeat 2 21 0 2 1486 283 272 101 42 chr5 118100808 118100927 -34436332 - MER20 DNA MER1_type -67 152 27 2 1486 203 296 162 40 chr5 118101925 118102073 -34435186 - MIRb SINE MIR -16 252 87 2 1486 279 54 0 0 chr5 118102702 118102739 -34434520 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 2 1486 364 328 78 94 chr5 118102921 118103122 -34434137 + ORR1E LTR MaLR 43 239 -120 2 1486 2469 138 39 5 chr5 118103122 118103529 -34433730 - MTC LTR MaLR 0 421 1 2 1486 364 328 78 94 chr5 118103529 118103647 -34433612 + ORR1E LTR MaLR 240 357 -2 2 1486 223 250 14 27 chr5 118104786 118104860 -34432399 + ID2 SINE ID 1 73 -10 2 1486 410 346 22 22 chr5 118104880 118105016 -34432243 + RSINE1 SINE B4 13 148 -17 2 1486 1357 238 43 48 chr5 118105055 118105190 -34432069 + ORR1C2 LTR MaLR 1 128 -256 2 1486 1919 190 78 32 chr5 118105190 118105691 -34431568 + RLTR11A LTR ERVK 1 524 -4 2 1486 1357 238 40 45 chr5 118105691 118105942 -34431317 + ORR1C2 LTR MaLR 129 421 0 2 1486 873 241 0 53 chr5 118105977 118106183 -34431076 + B4 SINE B4 84 278 -14 2 1486 817 120 0 70 chr5 118107183 118107326 -34429933 - B1_Mur4 SINE Alu 0 150 18 2 1486 343 211 26 26 chr5 118107538 118107616 -34429643 - HAL1-3A_ME LINE L1 -805 2053 1976 2 1486 330 242 24 0 chr5 118107625 118107749 -34429510 + (TATG)n Simple_repeat Simple_repeat 4 130 0 2 1486 1509 307 9 45 chr5 118107781 118108425 -34428834 - Lx9 LINE L1 -175 7469 6849 2 1486 212 100 25 0 chr5 118108553 118108593 -34428666 + (CCCCCA)n Simple_repeat Simple_repeat 5 45 0 2 1486 366 214 12 23 chr5 118108906 118108992 -34428267 + ID_B1 SINE B4 86 170 -54 2 1486 335 260 39 20 chr5 118108992 118109004 -34428255 + PB1D10 SINE Alu 5 104 -13 2 1486 1102 234 61 19 chr5 118109148 118109410 -34427849 - B4A SINE B4 -18 274 2 2 1486 634 312 50 0 chr5 118109650 118109852 -34427407 - MER58A DNA MER1_type -12 212 1 2 1486 256 355 42 68 chr5 118109941 118110177 -34427082 - MIRb SINE MIR -30 238 9 2 1486 430 271 0 37 chr5 118110336 118110470 -34426789 + ORR1E LTR MaLR 56 184 -175 2 1486 1493 227 29 26 chr5 118110752 118110907 -34426352 - MTEb LTR MaLR -16 363 211 2 1486 558 0 0 0 chr5 118110907 118110969 -34426290 + (GA)n Simple_repeat Simple_repeat 1 62 0 2 1486 1493 227 29 26 chr5 118110969 118111161 -34426098 - MTEb LTR MaLR -169 210 16 2 1486 311 213 147 0 chr5 118111211 118111286 -34425973 - RSINE1 SINE B4 -69 96 11 2 1486 538 284 0 16 chr5 118111333 118111462 -34425797 - RSINE1 SINE B4 -35 130 4 2 1486 208 333 13 0 chr5 118112074 118112149 -34425110 + MIRb SINE MIR 185 260 -8 2 1486 24 0 0 0 chr5 118113071 118113095 -34424164 + GC_rich Low_complexity Low_complexity 1 24 0 2 1486 373 289 8 55 chr5 118113243 118113371 -34423888 - MLT1D LTR MaLR 0 505 384 2 1486 281 270 0 0 chr5 118113773 118113836 -34423423 + C-rich Low_complexity Low_complexity 3 65 0 2 1486 290 148 0 0 chr5 118113968 118114022 -34423237 - B1F SINE Alu -31 118 65 2 1486 312 148 0 0 chr5 118114026 118114080 -34423179 - B1F SINE Alu -31 118 65 2 1486 231 224 0 0 chr5 118114084 118114133 -34423126 - B1F SINE Alu -31 118 70 2 1486 256 185 0 65 chr5 118114113 118114200 -34423059 - B1F SINE Alu -22 127 65 2 1486 260 185 0 0 chr5 118114175 118114229 -34423030 - B1_Mur4 SINE Alu -31 119 66 2 1486 448 250 24 8 chr5 118114224 118114349 -34422910 - B1F1 SINE Alu -22 127 1 2 1486 206 265 14 29 chr5 118114357 118114427 -34422832 + CT-rich Low_complexity Low_complexity 1 69 0 2 1486 541 216 18 0 chr5 118114585 118114696 -34422563 + ID_B1 SINE B4 105 217 -7 2 1486 381 333 11 51 chr5 118115620 118115832 -34421427 - MER20 DNA MER1_type -7 212 8 2 1486 321 235 0 0 chr5 118115853 118115985 -34421274 + (TG)n Simple_repeat Simple_repeat 2 133 0 2 1486 432 244 0 0 chr5 118116002 118116182 -34421077 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1486 216 361 10 82 chr5 118116214 118116276 -34420983 - B3A SINE B2 -16 182 1 2 1486 460 238 37 60 chr5 118116276 118116410 -34420849 - B4A SINE B4 -161 131 1 2 1486 240 333 111 33 chr5 118116447 118116627 -34420632 + MIR SINE MIR 67 260 -2 2 1486 225 0 0 0 chr5 118117652 118117677 -34419582 + (G)n Simple_repeat Simple_repeat 1 25 0 2 1486 244 133 48 32 chr5 118117744 118117806 -34419453 + (TTAA)n Simple_repeat Simple_repeat 2 64 0 2 1486 565 213 86 22 chr5 118117806 118117945 -34419314 - RSINE1 SINE B4 -7 158 11 2 1486 298 297 33 0 chr5 118117992 118118083 -34419176 - PB1D10 SINE Alu -23 94 1 3 1486 321 231 88 0 chr5 118118538 118118629 -34418630 + MIRb SINE MIR 35 133 -135 3 1486 351 287 19 0 chr5 118120144 118120252 -34417007 + PB1D10 SINE Alu 5 114 -3 3 1486 186 268 36 0 chr5 118121233 118121289 -34415970 - MIRc SINE MIR -111 157 100 3 1486 180 0 0 0 chr5 118121621 118121641 -34415618 + (T)n Simple_repeat Simple_repeat 1 20 0 3 1486 461 309 86 35 chr5 118121800 118122055 -34415204 + ORR1E LTR MaLR 3 270 -89 3 1486 579 96 0 0 chr5 118122174 118122257 -34415002 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 3 1486 1094 75 7 0 chr5 118122257 118122403 -34414856 - B1_Mus1 SINE Alu 0 148 2 3 1486 307 319 53 47 chr5 118122415 118122586 -34414673 - MER58A DNA MER1_type -51 173 2 3 1486 206 277 96 0 chr5 118122700 118122783 -34414476 - MIRb SINE MIR -169 99 9 3 1486 379 253 31 10 chr5 118122905 118123001 -34414258 + MIR SINE MIR 25 122 -140 3 1486 269 260 39 66 chr5 118123076 118123257 -34414002 + (CATG)n Simple_repeat Simple_repeat 3 178 0 3 1486 495 0 0 0 chr5 118123398 118123453 -34413806 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 1486 1116 243 125 6 chr5 118125377 118125696 -34411563 + MTEa LTR MaLR 21 377 -2 3 1486 314 42 0 41 chr5 118126235 118126284 -34410975 + (TCTCTG)n Simple_repeat Simple_repeat 6 52 0 3 1486 512 191 50 42 chr5 118126291 118126411 -34410848 - B1F SINE Alu -27 122 2 3 1486 692 231 71 0 chr5 118126549 118126718 -34410541 + B3A SINE B2 1 181 -17 3 1486 383 331 0 7 chr5 118128039 118128188 -34409071 - HAL1-2a_MD LINE L1 -532 2492 2345 3 1486 318 283 0 54 chr5 118128207 118128319 -34408940 - MIRb SINE MIR -39 229 124 3 1486 519 162 8 25 chr5 118128701 118128821 -34408438 + GA-rich Low_complexity Low_complexity 3 120 0 3 1486 348 305 0 37 chr5 118128821 118128930 -34408329 + A-rich Low_complexity Low_complexity 4 108 0 3 1486 400 333 56 25 chr5 118129718 118129915 -34407344 + MIRb SINE MIR 50 252 -16 3 1486 306 301 11 0 chr5 118130550 118130643 -34406616 + B4 SINE B4 7 100 -192 3 1486 212 222 54 27 chr5 118130664 118130812 -34406447 + (TGG)n Simple_repeat Simple_repeat 3 154 0 3 1486 414 287 178 12 chr5 118130812 118130981 -34406278 + B4A SINE B4 88 284 -8 3 1486 228 279 0 0 chr5 118131002 118131063 -34406196 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1486 231 196 0 0 chr5 118131056 118131107 -34406152 + GA-rich Low_complexity Low_complexity 2 52 0 3 1486 313 259 23 34 chr5 118131355 118131443 -34405816 + Tigger15a DNA TcMar 626 712 -3 3 1486 296 295 12 12 chr5 118131487 118131597 -34405662 + B1F SINE Alu 36 149 0 3 1486 244 333 0 0 chr5 118131614 118131680 -34405579 + ID4_ SINE ID 5 70 -13 3 1486 322 350 0 8 chr5 118131859 118131977 -34405282 - PB1D10 SINE Alu 0 117 1 3 1486 181 303 80 35 chr5 118131990 118132103 -34405156 - MIRb SINE MIR -37 231 114 3 1486 990 266 101 16 chr5 118134236 118134583 -34402676 + MTEa LTR MaLR 2 377 -2 3 1486 208 259 0 18 chr5 118134703 118134758 -34402501 + (ATG)n Simple_repeat Simple_repeat 3 56 0 3 1486 288 222 0 0 chr5 118135007 118135079 -34402180 + (TCCA)n Simple_repeat Simple_repeat 1 72 0 3 1486 961 162 6 9 chr5 118135105 118135456 -34401803 + (TCCA)n Simple_repeat Simple_repeat 1 349 0 3 1486 216 0 0 0 chr5 118135877 118135901 -34401358 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1486 777 235 3 0 chr5 118136154 118136507 -34400752 + CT-rich Low_complexity Low_complexity 1 354 0 3 1486 423 0 0 0 chr5 118137077 118137124 -34400135 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1486 610 260 20 92 chr5 118138796 118139035 -34398224 + B4A SINE B4 4 222 -70 3 1486 1389 60 16 21 chr5 118139035 118139223 -34398036 + B2_Mm2 SINE B2 2 188 -7 3 1486 610 260 20 92 chr5 118139223 118139288 -34397971 + B4A SINE B4 223 286 -6 3 1486 192 77 0 0 chr5 118139346 118139372 -34397887 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 1486 449 17 17 0 chr5 118140760 118140818 -34396441 + (TG)n Simple_repeat Simple_repeat 1 59 0 3 1486 253 256 15 127 chr5 118140993 118141127 -34396132 + MIRm SINE MIR 33 151 -125 3 1486 445 354 11 48 chr5 118141131 118141257 -34396002 - MLT1G LTR MaLR -2 589 467 3 1486 396 0 0 0 chr5 118141257 118141301 -34395958 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1486 445 354 11 48 chr5 118141301 118141361 -34395898 - MLT1G LTR MaLR -125 466 410 3 1486 293 288 213 24 chr5 118141538 118141702 -34395557 - MLT1G LTR MaLR -210 381 187 3 1486 363 44 0 0 chr5 118142069 118142114 -34395145 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 3 1486 225 59 19 56 chr5 118142559 118142613 -34394646 + (TTTTTG)n Simple_repeat Simple_repeat 4 55 0 3 1486 687 233 16 19 chr5 118142907 118143222 -34394037 + GA-rich Low_complexity Low_complexity 1 313 0 3 1486 473 274 7 22 chr5 118143700 118143838 -34393421 - B3A SINE B2 -7 191 56 3 1486 228 269 67 37 chr5 118143873 118144008 -34393251 + L1MD LINE L1 4629 4767 -1379 3 1486 225 243 70 134 chr5 118144209 118144366 -34392893 + L1MD LINE L1 5665 5811 -431 3 1486 300 177 8 213 chr5 118145105 118145227 -34392032 - B4A SINE B4 0 292 196 3 1486 248 190 17 0 chr5 118146306 118146364 -34390895 + B4A SINE B4 3 61 -231 3 1486 597 94 0 0 chr5 118146377 118146462 -34390797 + (GAAA)n Simple_repeat Simple_repeat 3 87 0 3 1486 210 71 0 0 chr5 118146678 118146706 -34390553 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1486 262 279 25 0 chr5 118147134 118147213 -34390046 - ID4 SINE ID -1 82 2 3 1486 353 22 0 21 chr5 118147313 118147360 -34389899 + (TCCCC)n Simple_repeat Simple_repeat 1 46 0 3 1486 519 17 0 0 chr5 118147371 118147431 -34389828 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 3 1486 381 266 26 9 chr5 118147431 118147545 -34389714 - PB1D10 SINE Alu 0 117 2 3 1486 224 314 6 0 chr5 118148175 118148344 -34388915 + (CA)n Simple_repeat Simple_repeat 1 170 0 3 1486 462 290 17 29 chr5 118148355 118148529 -34388730 + (CATA)n Simple_repeat Simple_repeat 4 175 0 3 1486 501 356 0 6 chr5 118148551 118148732 -34388527 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1486 331 335 6 46 chr5 118148665 118148840 -34388419 + (CATG)n Simple_repeat Simple_repeat 1 168 0 3 1486 398 251 0 6 chr5 118148840 118149004 -34388255 + (CA)n Simple_repeat Simple_repeat 1 163 0 3 1486 349 284 0 19 chr5 118149198 118149302 -34387957 - Lx8 LINE L1 -375 7098 6997 3 1486 369 0 0 0 chr5 118149305 118149346 -34387913 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1486 186 230 31 23 chr5 118149351 118149480 -34387779 + (TATG)n Simple_repeat Simple_repeat 1 130 0 3 1486 591 215 11 6 chr5 118149500 118149678 -34387581 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1486 209 268 20 0 chr5 118150079 118150144 -34387115 - L2a LINE L2 -6 3420 3316 3 1486 594 326 80 71 chr5 118150156 118150595 -34386664 - MLT1D LTR MaLR 0 505 63 3 1486 405 345 99 9 chr5 118151258 118151469 -34385790 - MER2 DNA MER2_type -29 316 87 3 1486 222 62 0 0 chr5 118152441 118152473 -34384786 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1486 283 380 0 27 chr5 118153594 118153705 -34383554 + PB1D10 SINE Alu 1 108 -9 3 1486 200 111 0 27 chr5 118153771 118153808 -34383451 + (AGGGGG)n Simple_repeat Simple_repeat 5 40 0 3 1486 481 338 42 9 chr5 118153853 118154068 -34383191 + MER58A DNA MER1_type 3 224 0 3 1486 825 147 126 0 chr5 118155566 118155756 -34381503 - ORR1C1 LTR MaLR 0 384 174 3 1486 516 72 0 0 chr5 118155756 118155825 -34381434 + (GA)n Simple_repeat Simple_repeat 1 69 0 3 1486 1310 183 29 18 chr5 118155825 118156098 -34381161 - MTD LTR MaLR -122 297 22 3 1486 243 254 57 98 chr5 118156128 118156250 -34381009 + B3A SINE B2 82 198 0 3 1486 254 244 178 0 chr5 118157625 118157715 -34379544 - MER81 DNA AcHobo 0 114 9 3 1486 305 246 0 0 chr5 118158709 118158774 -34378485 - MER58A DNA MER1_type -138 86 22 3 1486 189 171 0 0 chr5 118159645 118159680 -34377579 + (ATG)n Simple_repeat Simple_repeat 2 36 0 3 1486 230 232 145 0 chr5 118160377 118160446 -34376813 + MIR3 SINE MIR 111 189 -19 3 1486 491 45 0 15 chr5 118162029 118162096 -34375163 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1486 396 0 0 0 chr5 118162174 118162218 -34375041 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1486 450 316 68 54 chr5 118162652 118162873 -34374386 + B4 SINE B4 44 267 -25 3 1486 202 51 0 71 chr5 118162882 118162924 -34374335 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 3 1486 262 400 77 16 chr5 118163040 118163223 -34374036 - MLT1J2 LTR MaLR -239 209 16 3 1486 1929 141 9 12 chr5 118163470 118163801 -34373458 - ORR1A1 LTR MaLR 0 346 17 3 1486 415 157 0 0 chr5 118163787 118163876 -34373383 - ORR1A1 LTR MaLR -238 89 1 3 1486 582 223 45 0 chr5 118163901 118164013 -34373246 + RSINE1 SINE B4 3 119 -46 3 1486 351 0 0 0 chr5 118164018 118164057 -34373202 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1486 371 269 43 9 chr5 118164065 118164181 -34373078 + B1F SINE Alu 30 149 0 3 1486 592 230 12 0 chr5 118164248 118164409 -34372850 + GA-rich Low_complexity Low_complexity 1 163 0 3 1486 374 139 14 0 chr5 118164424 118164496 -34372763 + GA-rich Low_complexity Low_complexity 2 74 0 3 1486 449 342 35 88 chr5 118164619 118164936 -34372323 - ORR1E LTR MaLR -56 303 4 3 1486 210 374 0 33 chr5 118165154 118165306 -34371953 - L2 LINE L2 -994 2425 2279 3 1486 226 281 27 80 chr5 118165525 118165637 -34371622 + L2a LINE L2 3266 3371 -55 3 1486 557 207 6 33 chr5 118165690 118165870 -34371389 + (TATATG)n Simple_repeat Simple_repeat 6 180 0 3 1486 817 194 20 0 chr5 118165843 118166188 -34371071 + (TATG)n Simple_repeat Simple_repeat 1 352 0 3 1486 802 224 32 50 chr5 118166580 118166801 -34370458 + B4A SINE B4 49 265 -27 3 1486 309 26 0 0 chr5 118166802 118166840 -34370419 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1486 1493 77 0 10 chr5 118168140 118168337 -34368922 - B2_Mm2 SINE B2 0 195 1 3 1486 1309 161 9 18 chr5 118168714 118168935 -34368324 - URR1B DNA MER1_type -5 220 2 3 1486 390 344 49 0 chr5 118169112 118169234 -34368025 - RSINE1 SINE B4 -35 130 3 4 1486 317 239 54 11 chr5 118170249 118170342 -34366917 + MIR SINE MIR 94 190 -72 4 1486 319 234 53 141 chr5 118170479 118170653 -34366606 + MIRc SINE MIR 25 189 -87 4 1486 225 346 0 63 chr5 118171786 118171977 -34365282 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 4 1486 319 287 17 39 chr5 118171939 118172117 -34365142 + (TCTA)n Simple_repeat Simple_repeat 1 174 0 4 1486 230 253 12 0 chr5 118172137 118172220 -34365039 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 4 1486 414 127 0 0 chr5 118172314 118172385 -34364874 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 4 1486 348 345 27 33 chr5 118173018 118173168 -34364091 + MamRep434 DNA TcMar 26 174 -252 4 1486 1008 251 43 50 chr5 118173577 118173858 -34363401 - MTE2a LTR MaLR -31 348 70 4 1486 218 240 45 4 chr5 118174467 118174548 -34362711 + MIR SINE MIR 46 129 -139 4 1486 401 219 16 88 chr5 118174571 118174696 -34362563 + MIR SINE MIR 78 193 -69 4 1486 549 120 0 0 chr5 118174810 118174902 -34362357 + (TGGA)n Simple_repeat Simple_repeat 2 93 0 4 1486 291 278 0 14 chr5 118175456 118175529 -34361730 + B4 SINE B4 1 72 -220 4 1486 1192 121 33 0 chr5 118175516 118175698 -34361561 - B2_Mm2 SINE B2 -6 189 2 4 1486 380 252 15 92 chr5 118175698 118175827 -34361432 + B4 SINE B4 56 174 -118 4 1486 287 279 11 223 chr5 118175929 118176019 -34361240 - Tigger7 DNA MER2_type -1885 606 521 4 1486 546 273 27 27 chr5 118176019 118176166 -34361093 + RSINE1 SINE B4 2 148 -17 4 1486 287 279 11 223 chr5 118176166 118176250 -34361009 - Tigger7 DNA MER2_type -1971 520 469 4 1486 910 75 2 4 chr5 118176257 118176386 -34360873 - B1_Mus2 SINE Alu 0 149 24 4 1486 1216 303 122 33 chr5 118176386 118176836 -34360423 - Tigger7 DNA MER2_type -1993 498 9 4 1486 209 232 35 18 chr5 118177068 118177125 -34360134 - MIRc SINE MIR -144 124 67 4 1486 588 317 94 85 chr5 118177936 118178288 -34358971 + ORR1E LTR MaLR 3 357 -2 4 1486 368 283 196 12 chr5 118178405 118178573 -34358686 - ORR1D2 LTR MaLR -171 199 1 4 1486 235 352 21 111 chr5 118178617 118178761 -34358498 + MER2B DNA MER2_type 26 156 -180 4 1486 348 8 0 129 chr5 118179034 118179173 -34358086 + (CATATA)n Simple_repeat Simple_repeat 1 121 0 4 1486 915 230 78 5 chr5 118179352 118179544 -34357715 + B4A SINE B4 1 206 -86 4 1486 450 0 0 0 chr5 118181110 118181160 -34356099 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1486 306 208 0 115 chr5 118181162 118181249 -34356010 - RSINE1 SINE B4 -64 101 25 4 1486 243 0 0 0 chr5 118181848 118181875 -34355384 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1486 277 206 0 60 chr5 118182564 118182631 -34354628 - MTE2b LTR MaLR -11 368 306 4 1486 471 174 12 22 chr5 118182650 118182752 -34354507 - MTE2b LTR MaLR -265 114 13 4 1486 921 300 92 80 chr5 118183643 118184056 -34353203 + MTD LTR MaLR 1 418 -1 4 1486 328 340 87 0 chr5 118184156 118184341 -34352918 - MER58B DNA MER1_type -67 274 74 4 1486 21 0 0 0 chr5 118184582 118184603 -34352656 + AT_rich Low_complexity Low_complexity 1 21 0 4 1486 308 233 17 0 chr5 118184614 118184674 -34352585 + ID4 SINE ID 1 61 -22 4 1486 314 223 25 8 chr5 118184692 118184814 -34352445 + (CA)n Simple_repeat Simple_repeat 1 124 0 4 1486 194 174 22 0 chr5 118184825 118184871 -34352388 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 4 1486 592 195 23 6 chr5 118184871 118185046 -34352213 + (CA)n Simple_repeat Simple_repeat 2 179 0 4 1486 204 189 18 36 chr5 118185329 118185384 -34351875 + CT-rich Low_complexity Low_complexity 1 54 0 4 1486 230 320 58 42 chr5 118185384 118185573 -34351686 - L1ME4a LINE L1 -4 6120 5929 4 1486 492 105 0 0 chr5 118186529 118186605 -34350654 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1486 236 202 2 0 chr5 118186738 118186788 -34350471 + MIR SINE MIR 116 173 -95 4 1486 186 189 0 0 chr5 118186842 118186879 -34350380 + G-rich Low_complexity Low_complexity 1 37 0 4 1486 268 226 0 0 chr5 118186917 118186970 -34350289 + B4 SINE B4 236 288 -4 4 1486 298 272 80 97 chr5 118187349 118187485 -34349774 + MER113 DNA MER1_type 143 284 -237 4 1486 207 0 0 0 chr5 118187485 118187508 -34349751 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1486 298 272 80 97 chr5 118187508 118187546 -34349713 + MER113 DNA MER1_type 285 314 -207 4 1486 356 286 175 72 chr5 118187642 118187962 -34349297 - MLT1A0 LTR MaLR -12 353 1 4 1486 669 256 224 0 chr5 118188564 118188787 -34348472 + B4A SINE B4 2 274 -18 4 1486 299 241 32 57 chr5 118189390 118189513 -34347746 + L2a LINE L2 2989 3108 -318 4 1486 225 0 0 0 chr5 118190403 118190428 -34346831 + (A)n Simple_repeat Simple_repeat 1 25 0 4 1486 250 344 11 0 chr5 118190555 118190648 -34346611 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 4 1486 229 250 0 53 chr5 118190912 118190968 -34346291 + L1MA8 LINE L1 5675 5729 -562 4 1486 754 245 202 91 chr5 118190968 118191309 -34345950 + MTE2a LTR MaLR 1 379 0 4 1486 229 250 0 53 chr5 118191309 118191328 -34345931 + L1MA8 LINE L1 5730 5746 -545 4 1486 573 178 47 0 chr5 118191482 118191589 -34345670 + PB1D7 SINE Alu 1 112 -8 4 1486 250 191 171 39 chr5 118191597 118191674 -34345585 + ID4 SINE ID 5 93 -59 4 1486 329 250 24 8 chr5 118191904 118192029 -34345230 + L1MA8 LINE L1 6163 6289 -2 4 1486 370 302 0 25 chr5 118192036 118192155 -34345104 + PB1 SINE Alu 1 116 -11 4 1486 251 264 0 0 chr5 118192158 118192211 -34345048 + ID4 SINE ID 2 54 -29 4 1486 226 209 113 56 chr5 118192379 118192450 -34344809 - Kanga1d DNA Tc2 -530 79 5 4 1486 204 304 0 68 chr5 118192476 118192550 -34344709 - MIRm SINE MIR -86 190 122 4 1486 441 0 0 0 chr5 118192665 118192714 -34344545 + (TG)n Simple_repeat Simple_repeat 2 50 0 4 1486 204 319 21 52 chr5 118192721 118192817 -34344442 + MIRb SINE MIR 85 177 -91 4 1486 216 0 0 0 chr5 118193033 118193057 -34344202 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 4 1486 471 250 212 0 chr5 118193072 118193204 -34344055 - B4 SINE B4 -128 164 5 4 1486 225 119 0 0 chr5 118193375 118193417 -34343842 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 4 1486 464 292 76 42 chr5 118193648 118193912 -34343347 - MLT1A0 LTR MaLR 0 365 93 4 1486 2289 138 93 53 chr5 118193996 118194462 -34342797 - RMER4B LTR ERVK -14 452 17 4 1486 357 337 112 0 chr5 118194475 118194644 -34342615 - L1M5 LINE L1 -450 5723 5536 4 1486 202 149 41 41 chr5 118195117 118195166 -34342093 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 4 1486 573 15 0 0 chr5 118195339 118195405 -34341854 + (TC)n Simple_repeat Simple_repeat 1 66 0 4 1486 360 0 0 0 chr5 118195405 118195444 -34341815 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1486 261 375 97 16 chr5 118195600 118195780 -34341479 - MIR SINE MIR -67 195 8 4 1486 518 232 0 0 chr5 118196447 118196542 -34340717 + PB1D10 SINE Alu 16 110 -7 4 1486 680 312 85 71 chr5 118196542 118196825 -34340434 + B4 SINE B4 2 288 -4 4 1486 435 113 0 0 chr5 118196895 118196966 -34340293 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1486 313 126 30 0 chr5 118196994 118197052 -34340207 - ORR1C2 LTR MaLR -2 382 311 4 1486 228 89 222 0 chr5 118197028 118197073 -34340186 - ORR1C2 LTR MaLR -320 58 4 4 1486 403 279 92 29 chr5 118197815 118197988 -34339271 - ORR1E LTR MaLR -166 193 2 4 1486 342 0 0 0 chr5 118198225 118198263 -34338996 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1486 713 332 61 58 chr5 118199462 118199907 -34337352 - Helitron3Na_Mam RC Helitron -8 478 33 4 1486 570 322 61 80 chr5 118200295 118200656 -34336603 - ORR1E LTR MaLR -5 354 1 4 1486 2593 116 59 25 chr5 118201525 118201932 -34335327 + MTC LTR MaLR 1 421 0 4 1486 2231 191 144 10 chr5 118201933 118202452 -34334807 - ORR1A2-int LTR MaLR -908 601 13 4 1486 789 112 149 0 chr5 118202453 118202587 -34334672 + ORR1B1 LTR MaLR 1 154 -240 4 1486 438 114 0 0 chr5 118202592 118202662 -34334597 + (CA)n Simple_repeat Simple_repeat 2 71 0 4 1486 2175 107 55 0 chr5 118204318 118204628 -34332631 - ORR1A2 LTR MaLR 0 327 1 4 1486 424 310 70 13 chr5 118204670 118204702 -34332557 + MER20 DNA MER1_type 54 92 -127 4 1486 396 0 0 0 chr5 118204702 118204746 -34332513 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1486 424 310 70 13 chr5 118204746 118204870 -34332389 + MER20 DNA MER1_type 93 219 0 4 1486 29 47 0 0 chr5 118205382 118205425 -34331834 + AT_rich Low_complexity Low_complexity 1 43 0 4 1486 691 226 8 0 chr5 118205513 118205646 -34331613 + RSINE1 SINE B4 1 134 -31 4 1486 291 28 0 0 chr5 118205647 118205683 -34331576 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1486 412 308 19 0 chr5 118205741 118205845 -34331414 + RSINE1 SINE B4 2 107 -58 4 1486 339 25 0 0 chr5 118205866 118205906 -34331353 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1486 545 148 8 0 chr5 118205906 118206034 -34331225 + GA-rich Low_complexity Low_complexity 1 129 0 4 1486 381 43 0 0 chr5 118206596 118206643 -34330616 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 4 1486 298 196 0 55 chr5 118207157 118207239 -34330020 - ID4 SINE ID -57 95 17 4 1486 843 279 96 8 chr5 118207253 118207513 -34329746 + B4A SINE B4 5 287 -5 4 1486 214 250 18 0 chr5 118207548 118207604 -34329655 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1486 185 373 98 23 chr5 118208316 118208530 -34328729 - MIRb SINE MIR -33 235 6 4 1486 904 269 50 25 chr5 118208606 118208823 -34328436 + B4 SINE B4 1 229 -63 4 1486 764 238 0 7 chr5 118208823 118208971 -34328288 + B1_Mur1 SINE Alu 1 147 -2 4 1486 904 269 50 25 chr5 118208971 118209031 -34328228 + B4 SINE B4 230 284 -8 4 1486 255 306 79 36 chr5 118209144 118209336 -34327923 - MER74B LTR ERVL -332 226 20 4 1486 254 270 27 0 chr5 118209346 118209420 -34327839 + ID4_ SINE ID 5 80 -3 4 1486 1448 170 159 0 chr5 118209575 118209934 -34327325 - Lx9 LINE L1 -1 7643 7228 4 1486 212 156 0 0 chr5 118209960 118209992 -34327267 + B1_Mur1 SINE Alu 93 124 -25 4 1486 529 251 99 29 chr5 118209981 118210153 -34327106 + B3A SINE B2 15 198 0 4 1486 335 246 57 8 chr5 118212316 118212526 -34324733 + (TGGA)n Simple_repeat Simple_repeat 1 220 0 4 1486 336 234 21 0 chr5 118212538 118212679 -34324580 + (TGGA)n Simple_repeat Simple_repeat 4 147 0 4 1486 1110 203 11 14 chr5 118212696 118213052 -34324207 + (TGGA)n Simple_repeat Simple_repeat 1 355 0 4 1486 405 0 0 0 chr5 118214020 118214065 -34323194 + (CATA)n Simple_repeat Simple_repeat 2 46 0 4 1486 333 0 0 0 chr5 118214065 118214101 -34323158 + (GA)n Simple_repeat Simple_repeat 2 38 0 4 1486 184 296 37 0 chr5 118214767 118214821 -34322438 - L2b LINE L2 -177 3198 3143 5 1486 402 271 44 52 chr5 118215204 118215340 -34321919 + MIRc SINE MIR 26 160 -108 5 1486 311 273 43 43 chr5 118217615 118217707 -34319552 + B4A SINE B4 54 145 -147 5 1486 352 213 145 13 chr5 118217650 118217726 -34319533 + PB1D10 SINE Alu 5 90 -27 5 1486 300 70 0 0 chr5 118218427 118218470 -34318789 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5 1486 1075 82 0 0 chr5 118218470 118218604 -34318655 - B1_Mus1 SINE Alu -8 140 7 5 1486 870 274 5 11 chr5 118218685 118218873 -34318386 + ID_B1 SINE B4 21 207 -17 5 1486 360 0 0 0 chr5 118218936 118218976 -34318283 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1486 537 237 0 9 chr5 118219447 118219562 -34317697 + Charlie12 DNA MER1_type 7 120 -2753 5 1486 231 114 0 0 chr5 118219586 118219621 -34317638 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1486 282 328 103 15 chr5 118220354 118220490 -34316769 - MLT1C LTR MaLR -178 289 142 5 1486 434 309 73 153 chr5 118220495 118220907 -34316352 - MTEb LTR MaLR 0 379 1 5 1486 307 227 0 0 chr5 118221262 118221328 -34315931 - MER117 DNA MER1_type -26 171 106 5 1486 239 185 19 0 chr5 118222273 118222334 -34314925 - PB1D10 SINE Alu -34 115 52 5 1486 230 209 0 0 chr5 118222297 118222340 -34314919 - 4.5SRNA scRNA scRNA -8 86 44 5 1486 203 0 37 0 chr5 118223170 118223197 -34314062 + (TGGGGG)n Simple_repeat Simple_repeat 6 33 0 5 1486 223 149 21 21 chr5 118223938 118223986 -34313273 + (TA)n Simple_repeat Simple_repeat 1 48 0 5 1486 629 234 4 0 chr5 118224224 118224456 -34312803 + (TGGA)n Simple_repeat Simple_repeat 1 232 0 5 1486 488 251 6 0 chr5 118224483 118224654 -34312605 + (TGGA)n Simple_repeat Simple_repeat 3 174 0 5 1486 254 286 8 0 chr5 118224689 118224815 -34312444 + (TGGA)n Simple_repeat Simple_repeat 1 127 0 5 1486 786 269 53 0 chr5 118225579 118225824 -34311435 - B4 SINE B4 -32 260 3 5 1486 240 338 0 0 chr5 118226002 118226082 -34311177 + MIRb SINE MIR 48 127 -141 5 1486 683 266 87 62 chr5 118226330 118226606 -34310653 - B4A SINE B4 -9 283 1 5 1487 511 236 9 0 chr5 118227708 118227814 -34309445 + PB1D9 SINE Alu 2 108 -12 5 1487 441 0 0 0 chr5 118227816 118227865 -34309394 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 5 1487 356 176 52 52 chr5 118227871 118227967 -34309292 - B1F SINE Alu -17 132 37 5 1487 489 255 67 27 chr5 118228361 118228510 -34308749 + ID_B1 SINE B4 70 224 0 5 1487 274 183 6 0 chr5 118228529 118228593 -34308666 + B3A SINE B2 15 79 -116 5 1487 315 0 0 0 chr5 118228626 118228661 -34308598 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1487 459 48 0 0 chr5 118228661 118228722 -34308537 + (GA)n Simple_repeat Simple_repeat 2 63 0 5 1487 213 269 44 0 chr5 118228877 118228945 -34308314 - MIRm SINE MIR -15 261 199 5 1487 322 292 8 27 chr5 118229621 118229712 -34307547 + L2a LINE L2 3277 3420 -6 5 1487 549 0 0 0 chr5 118229942 118230003 -34307256 + (GA)n Simple_repeat Simple_repeat 1 61 0 5 1487 265 185 272 0 chr5 118230121 118230202 -34307057 - MIRc SINE MIR -144 124 22 5 1487 228 279 37 46 chr5 118230325 118230434 -34306825 + MIRb SINE MIR 80 187 -81 5 1487 280 316 81 31 chr5 118230482 118230642 -34306617 + MIRb SINE MIR 87 254 -14 5 1487 234 0 0 0 chr5 118231769 118231795 -34305464 + (TATG)n Simple_repeat Simple_repeat 1 26 0 5 1487 204 196 56 56 chr5 118232777 118232831 -34304428 - L2c LINE L2 -18 3408 3355 5 1487 256 184 132 84 chr5 118233397 118233414 -34303845 - ID SINE ID -137 87 1 5 1487 271 167 152 0 chr5 118233414 118233480 -34303779 - ID4_ SINE ID -7 76 1 5 1487 697 242 77 5 chr5 118233512 118233707 -34303552 - Lx8 LINE L1 -9 7464 7256 5 1487 242 165 0 29 chr5 118234189 118234257 -34303002 - L2c LINE L2 -6 3381 3306 5 1487 909 191 169 19 chr5 118234828 118235095 -34302164 - MTD LTR MaLR 0 419 113 5 1487 512 237 17 17 chr5 118235100 118235220 -34302039 + B1_Mur1 SINE Alu 3 122 -27 5 1487 920 212 20 15 chr5 118235265 118235466 -34301793 + B3 SINE B2 5 206 -10 5 1487 422 286 7 50 chr5 118235466 118235606 -34301653 - MTD LTR MaLR -287 134 1 5 1487 252 59 0 0 chr5 118236222 118236256 -34301003 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1487 304 314 7 7 chr5 118236272 118236410 -34300849 + (TG)n Simple_repeat Simple_repeat 1 138 0 5 1487 384 193 61 0 chr5 118236768 118236865 -34300394 - PB1D10 SINE Alu -3 124 6 5 1487 560 189 34 4 chr5 118237464 118237729 -34299530 + CT-rich Low_complexity Low_complexity 1 273 0 5 1487 528 193 0 0 chr5 118238219 118238333 -34298926 + (CA)n Simple_repeat Simple_repeat 2 115 0 5 1487 294 280 41 41 chr5 118239865 118239988 -34297271 + PB1D10 SINE Alu 5 127 -21 5 1487 182 333 0 26 chr5 118240281 118240358 -34296901 + MIRc SINE MIR 38 112 -156 5 1487 192 97 0 0 chr5 118240491 118240522 -34296737 + (G)n Simple_repeat Simple_repeat 1 31 0 5 1487 723 269 53 27 chr5 118240746 118240971 -34296288 - B4A SINE B4 -14 278 48 5 1487 391 243 18 64 chr5 118241151 118241261 -34295998 + PB1D10 SINE Alu 11 115 -2 5 1487 353 332 120 43 chr5 118241275 118241508 -34295751 - Charlie4a DNA MER1_type -246 262 12 5 1487 320 232 305 58 chr5 118241650 118241880 -34295379 + B4A SINE B4 7 292 0 5 1487 216 97 0 0 chr5 118242250 118242281 -34294978 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1487 490 252 143 24 chr5 118242299 118242425 -34294834 - RSINE1 SINE B4 -21 144 4 5 1487 2179 117 66 92 chr5 118242453 118242876 -34294383 - MTC LTR MaLR -9 412 1 5 1487 219 350 20 0 chr5 118243027 118243127 -34294132 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 5 1487 903 179 0 0 chr5 118243143 118243322 -34293937 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 5 1487 652 227 10 0 chr5 118243344 118243640 -34293619 + (TGGA)n Simple_repeat Simple_repeat 1 299 0 5 1487 550 318 0 26 chr5 118245292 118245444 -34291815 - RSINE1 SINE B4 -16 149 2 5 1487 226 402 77 29 chr5 118245630 118245904 -34291355 + L2b LINE L2 3078 3364 -11 5 1487 210 143 0 0 chr5 118245913 118245948 -34291311 + (TGGG)n Simple_repeat Simple_repeat 4 38 0 5 1487 342 297 7 14 chr5 118246001 118246141 -34291118 + (TGGA)n Simple_repeat Simple_repeat 3 141 0 5 1487 337 283 0 13 chr5 118246164 118246318 -34290941 + (TA)n Simple_repeat Simple_repeat 2 153 0 5 1487 524 269 6 0 chr5 118246335 118246510 -34290749 + (TA)n Simple_repeat Simple_repeat 2 177 0 5 1487 229 289 0 0 chr5 118246769 118246821 -34290438 + polypurine Low_complexity Low_complexity 5 56 0 5 1487 955 70 23 0 chr5 118246884 118247012 -34290247 + B1_Mus1 SINE Alu 2 132 -16 5 1487 794 193 6 0 chr5 118247012 118247183 -34290076 + GA-rich Low_complexity Low_complexity 1 172 0 5 1487 563 218 17 17 chr5 118247206 118247379 -34289880 + GA-rich Low_complexity Low_complexity 3 175 0 5 1487 193 357 0 12 chr5 118247702 118247787 -34289472 - MIRb SINE MIR -122 146 63 5 1487 188 326 94 10 chr5 118248244 118248340 -34288919 + MIRb SINE MIR 108 211 -57 5 1487 253 373 62 6 chr5 118249084 118249262 -34287997 - Tigger7 DNA MER2_type -33 2458 2271 5 1487 329 278 11 11 chr5 118249252 118249343 -34287916 - Tigger7 DNA MER2_type -2370 121 31 5 1487 279 337 54 29 chr5 118249436 118249625 -34287634 - MIRb SINE MIR -50 212 20 5 1487 234 0 0 0 chr5 118249755 118249781 -34287478 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1487 225 329 14 14 chr5 118250805 118250879 -34286380 - MLT1A0 LTR MaLR -269 96 23 5 1487 474 150 110 0 chr5 118250920 118251020 -34286239 - Lx4A LINE L1 0 7058 6948 5 1487 2667 127 122 28 chr5 118252749 118253284 -34283975 - RMER4B LTR ERVK 0 585 1 5 1487 236 192 58 0 chr5 118253291 118253343 -34283916 + Lx9 LINE L1 7384 7438 -206 5 1487 672 239 117 71 chr5 118253813 118254164 -34283095 - MER97a DNA MER1_type? -16 878 512 5 1487 225 258 0 0 chr5 118254299 118254419 -34282840 + (TG)n Simple_repeat Simple_repeat 1 120 0 5 1487 350 129 16 0 chr5 118254418 118254480 -34282779 + (GGGA)n Simple_repeat Simple_repeat 3 65 0 5 1487 407 260 42 0 chr5 118254483 118254579 -34282680 - RSINE1 SINE B4 -44 121 22 5 1487 254 357 97 34 chr5 118254594 118254861 -34282398 - MER97a DNA MER1_type? -507 387 104 5 1487 240 380 152 7 chr5 118255050 118255201 -34282058 + MIRb SINE MIR 93 265 -3 5 1487 205 346 79 18 chr5 118255636 118255801 -34281458 - L2a LINE L2 -3 3423 3249 5 1487 411 297 18 0 chr5 118256487 118256598 -34280661 + PB1D7 SINE Alu 1 113 -7 5 1487 220 96 0 55 chr5 118256621 118256676 -34280583 + T-rich Low_complexity Low_complexity 1 52 0 5 1487 249 249 34 84 chr5 118257012 118257113 -34280146 - PB1D10 SINE Alu -9 111 16 5 1487 933 262 54 4 chr5 118257363 118257639 -34279620 - B4 SINE B4 -2 290 1 5 1487 293 200 91 26 chr5 118258161 118258238 -34279021 + MER20 DNA MER1_type 1 82 -137 5 1487 300 305 66 77 chr5 118258452 118258633 -34278626 - MLT1H LTR MaLR 0 549 371 5 1487 194 314 123 5 chr5 118258992 118259203 -34278056 + L2 LINE L2 2847 3082 -337 5 1487 249 188 21 0 chr5 118259405 118259453 -34277806 + L2a LINE L2 3354 3402 -24 5 1487 184 30 0 57 chr5 118259461 118259496 -34277763 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 5 1487 463 179 0 31 chr5 118259578 118259676 -34277583 + B4A SINE B4 40 134 -158 5 1487 407 302 144 77 chr5 118260614 118261162 -34276097 - L1ME2 LINE L1 -233 5931 5347 5 1487 180 176 0 0 chr5 118261614 118261648 -34275611 + (TGGG)n Simple_repeat Simple_repeat 2 35 0 5 1487 228 256 0 0 chr5 118262160 118262246 -34275013 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 5 1487 216 326 22 0 chr5 118262259 118262351 -34274908 + (TGGA)n Simple_repeat Simple_repeat 3 96 0 5 1487 937 233 33 58 chr5 118262353 118262772 -34274487 - RLTR18B LTR ERVK -134 378 2 5 1487 336 239 11 11 chr5 118263078 118263167 -34274092 + L2b LINE L2 2995 3083 -292 5 1487 362 321 175 38 chr5 118264160 118264480 -34272779 - ORR1D2 LTR MaLR 0 370 7 5 1487 220 246 28 28 chr5 118265064 118265135 -34272124 + MIRc SINE MIR 64 134 -134 5 1487 501 305 0 32 chr5 118266375 118266531 -34270728 - ID_B1 SINE B4 -1 223 73 5 1487 251 275 43 0 chr5 118266751 118266820 -34270439 - MLT1F2 LTR MaLR -414 146 75 5 1487 351 348 15 77 chr5 118267619 118267815 -34269444 + ORR1E LTR MaLR 4 187 -172 6 1487 1035 114 78 0 chr5 118268016 118268183 -34269076 + B2_Mm1t SINE B2 2 181 -12 6 1487 285 125 375 9 chr5 118268213 118268317 -34268942 + B2_Mm2 SINE B2 47 188 -7 6 1487 304 259 281 0 chr5 118269314 118269449 -34267810 - MER20 DNA MER1_type -27 192 20 6 1487 400 272 204 34 chr5 118269572 118269807 -34267452 + B4 SINE B4 5 279 -13 6 1487 354 248 0 0 chr5 118269825 118269934 -34267325 + (CA)n Simple_repeat Simple_repeat 1 109 0 6 1487 598 185 62 62 chr5 118271256 118271400 -34265859 + B4 SINE B4 86 229 -63 6 1487 294 332 66 62 chr5 118271463 118271752 -34265507 - RMER12 LTR ERVK -260 1062 773 6 1487 344 265 59 8 chr5 118272086 118272204 -34265055 - L1MA6 LINE L1 -13 6287 6164 6 1487 426 213 5 0 chr5 118272212 118272298 -34264961 + PB1D10 SINE Alu 23 112 -37 6 1487 356 259 42 33 chr5 118272298 118272319 -34264940 + ID_B1 SINE B4 104 211 -13 6 1487 1307 68 5 68 chr5 118272319 118272501 -34264758 + B2_Mm1t SINE B2 1 171 -22 6 1487 1124 75 7 0 chr5 118272501 118272647 -34264612 + B1_Mus1 SINE Alu 1 147 -1 6 1487 1307 68 5 68 chr5 118272647 118272670 -34264589 + B2_Mm1t SINE B2 172 193 0 6 1487 356 259 42 33 chr5 118272670 118272682 -34264577 + ID_B1 SINE B4 212 223 -1 6 1487 218 268 75 67 chr5 118273116 118273236 -34264023 - L2 LINE L2 -552 2867 2747 6 1487 281 342 0 9 chr5 118273317 118273429 -34263830 + GA-rich Low_complexity Low_complexity 3 113 0 6 1487 285 277 24 24 chr5 118273986 118274071 -34263188 - MLT1K LTR MaLR -329 266 182 6 1487 252 203 0 63 chr5 118274207 118274219 -34263040 + B4 SINE B4 77 135 -157 6 1487 344 118 0 0 chr5 118274219 118274270 -34262989 + B1_Mus1 SINE Alu 1 51 -97 6 1487 424 292 109 7 chr5 118274416 118274554 -34262705 + RSINE1 SINE B4 2 153 -12 6 1487 1011 185 41 10 chr5 118274597 118274794 -34262465 + B3 SINE B2 1 203 -13 6 1487 432 0 0 0 chr5 118274795 118274843 -34262416 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1487 432 0 0 0 chr5 118274843 118274890 -34262369 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1487 183 235 0 0 chr5 118275385 118275436 -34261823 + C-rich Low_complexity Low_complexity 1 51 0 6 1487 698 292 57 5 chr5 118276107 118276300 -34260959 - B4A SINE B4 -8 284 82 6 1487 246 232 89 0 chr5 118276293 118276349 -34260910 + MTE2b LTR MaLR 43 103 -276 6 1487 672 296 0 5 chr5 118276374 118276561 -34260698 + MTE2b LTR MaLR 90 275 -104 6 1487 373 195 0 49 chr5 118276576 118276657 -34260602 + RSINE1 SINE B4 53 129 -36 6 1487 557 102 54 23 chr5 118276948 118277174 -34260085 + (CA)n Simple_repeat Simple_repeat 1 233 0 6 1487 273 29 0 0 chr5 118277232 118277266 -34259993 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1487 240 321 109 29 chr5 118277380 118277518 -34259741 + MIRb SINE MIR 89 237 -31 6 1487 871 209 9 59 chr5 118277777 118277952 -34259307 - MTD LTR MaLR -211 208 35 6 1487 1214 140 51 14 chr5 118277952 118278169 -34259090 - URR1B DNA MER1_type 0 225 1 6 1487 871 209 9 59 chr5 118278169 118278212 -34259047 - MTD LTR MaLR -385 34 1 6 1487 516 32 0 0 chr5 118278784 118278846 -34258413 + (CA)n Simple_repeat Simple_repeat 1 62 0 6 1487 244 231 19 0 chr5 118280396 118280448 -34256811 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 6 1487 343 295 199 8 chr5 118280870 118281116 -34256143 - LTR40b LTR ERVL 0 462 170 6 1487 639 211 0 0 chr5 118281335 118281491 -34255768 + (TGGA)n Simple_repeat Simple_repeat 3 158 0 6 1487 409 272 11 39 chr5 118281542 118281722 -34255537 + (TGGA)n Simple_repeat Simple_repeat 3 177 0 6 1487 453 253 53 0 chr5 118281906 118282076 -34255183 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 6 1487 334 349 11 17 chr5 118282109 118282287 -34254972 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 6 1487 650 328 16 64 chr5 118282572 118283008 -34254251 - L1MA4 LINE L1 -285 6015 5601 6 1487 255 290 224 0 chr5 118283034 118283141 -34254118 - B1F SINE Alu -9 140 10 6 1487 352 302 72 10 chr5 118283165 118283359 -34253900 - L1MA4 LINE L1 -712 5588 5383 6 1487 354 98 0 0 chr5 118283412 118283463 -34253796 + (TTTC)n Simple_repeat Simple_repeat 4 54 0 6 1487 1064 89 0 43 chr5 118283477 118283665 -34253594 + (TCC)n Simple_repeat Simple_repeat 1 180 0 6 1487 2114 165 45 5 chr5 118283696 118284097 -34253162 + MTC LTR MaLR 5 421 0 6 1487 809 314 97 30 chr5 118284100 118284383 -34252876 - L1MA4 LINE L1 -807 5336 5042 6 1487 1086 49 28 0 chr5 118284383 118284526 -34252733 - B1_Mm SINE Alu 0 147 1 6 1487 809 314 97 30 chr5 118284526 118284912 -34252347 - L1MA4 LINE L1 -1102 5041 4622 6 1487 624 152 33 7 chr5 118284945 118285097 -34252162 + GA-rich Low_complexity Low_complexity 2 157 0 6 1487 396 0 0 0 chr5 118285097 118285141 -34252118 + (CAA)n Simple_repeat Simple_repeat 2 45 0 6 1487 423 0 0 0 chr5 118285777 118285824 -34251435 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1487 242 260 158 10 chr5 118286051 118286152 -34251107 - MIR3 SINE MIR -49 159 44 6 1487 253 255 160 0 chr5 118288204 118288298 -34248961 - MER5A DNA MER1_type -75 114 6 6 1487 191 286 38 25 chr5 118288537 118288616 -34248643 - MIRb SINE MIR -66 202 123 6 1487 248 253 0 32 chr5 118289830 118289924 -34247335 + (TCTCTG)n Simple_repeat Simple_repeat 2 92 0 6 1487 468 91 0 0 chr5 118289939 118290005 -34247254 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1487 288 0 0 0 chr5 118291102 118291134 -34246125 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1487 271 288 147 31 chr5 118294433 118294562 -34242697 + MIRb SINE MIR 87 230 -38 6 1487 900 0 0 0 chr5 118294945 118295045 -34242214 + (TC)n Simple_repeat Simple_repeat 1 100 0 6 1487 190 377 0 0 chr5 118295523 118295592 -34241667 - MIRc SINE MIR -136 132 64 6 1487 243 125 0 0 chr5 118297390 118297430 -34239829 + (TTA)n Simple_repeat Simple_repeat 2 41 0 6 1487 1329 140 5 13 chr5 118297694 118297918 -34239341 + URR1A DNA MER1_type 5 226 0 6 1487 231 276 0 0 chr5 118298392 118298468 -34238791 + T-rich Low_complexity Low_complexity 1 76 0 6 1487 388 262 0 0 chr5 118298544 118298624 -34238635 + RSINE1 SINE B4 1 80 -85 6 1487 239 326 58 43 chr5 118298545 118298683 -34238576 + B2_Mm2 SINE B2 1 140 -55 6 1487 21 0 0 0 chr5 118298928 118298949 -34238310 + AT_rich Low_complexity Low_complexity 1 21 0 6 1487 642 159 0 0 chr5 118298949 118299075 -34238184 + (CA)n Simple_repeat Simple_repeat 1 126 0 6 1487 369 266 0 0 chr5 118299155 118299234 -34238025 + PB1D7 SINE Alu 34 112 -8 6 1487 457 167 73 12 chr5 118299677 118299781 -34237478 + PB1D10 SINE Alu 10 126 -23 6 1487 34 0 0 0 chr5 118299967 118300001 -34237258 + AT_rich Low_complexity Low_complexity 1 34 0 6 1487 689 288 100 73 chr5 118301302 118301561 -34235698 + B4A SINE B4 1 266 -26 6 1487 658 216 11 0 chr5 118301586 118301762 -34235497 + CT-rich Low_complexity Low_complexity 1 178 0 6 1487 447 19 0 0 chr5 118301796 118301848 -34235411 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1487 202 270 191 0 chr5 118301979 118302068 -34235191 - MIRb SINE MIR -113 155 50 6 1487 330 205 0 60 chr5 118303308 118303391 -34233868 - MADE2 DNA Mariner -2 78 1 6 1487 216 362 0 0 chr5 118303555 118303624 -34233635 - MER5A DNA MER1_type -103 86 18 6 1487 786 222 82 58 chr5 118304984 118305190 -34232069 + ID_B1 SINE B4 4 214 -10 6 1487 682 60 0 41 chr5 118306984 118307106 -34230153 + (TCC)n Simple_repeat Simple_repeat 2 118 0 6 1487 260 252 102 38 chr5 118307168 118307325 -34229934 + L2 LINE L2 2720 2886 -533 6 1487 198 214 21 51 chr5 118307915 118308023 -34229236 - MIRc SINE MIR -69 193 95 6 1487 200 317 48 38 chr5 118308640 118308745 -34228514 - MIR SINE MIR -104 158 53 6 1487 1026 104 7 0 chr5 118309054 118309198 -34228061 - B1_Mus1 SINE Alu -2 146 2 6 1487 1525 260 161 20 chr5 118309245 118309880 -34227379 - Lx8 LINE L1 0 7473 6750 6 1487 193 231 12 25 chr5 118310004 118310084 -34227175 + (TATG)n Simple_repeat Simple_repeat 4 82 0 6 1487 393 270 11 182 chr5 118311327 118311508 -34225751 - RSINE1 SINE B4 -12 153 4 6 1487 251 271 32 63 chr5 118311688 118311814 -34225445 - MER33 DNA MER1_type -68 256 135 6 1487 291 300 0 32 chr5 118311806 118311899 -34225360 + PB1D10 SINE Alu 27 116 -1 6 1487 911 288 117 32 chr5 118312065 118312500 -34224759 - RMER5 LTR ERV1 -10 524 53 6 1487 240 137 0 0 chr5 118312534 118312585 -34224674 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 6 1487 270 286 0 0 chr5 118313392 118313490 -34223769 + (TG)n Simple_repeat Simple_repeat 1 98 0 6 1487 251 145 113 0 chr5 118313816 118313878 -34223381 - MIRc SINE MIR -126 150 82 6 1487 452 255 22 7 chr5 118314098 118314236 -34223023 + ID_B1 SINE B4 84 223 -1 6 1487 665 55 0 11 chr5 118314301 118314392 -34222867 + (GGGA)n Simple_repeat Simple_repeat 4 93 0 6 1487 773 21 11 0 chr5 118314564 118314659 -34222600 + (TC)n Simple_repeat Simple_repeat 1 96 0 6 1487 220 131 35 61 chr5 118315522 118315636 -34221623 + C-rich Low_complexity Low_complexity 2 112 0 6 1487 235 162 0 0 chr5 118319144 118319181 -34218078 + tRNA-Gly-GGA tRNA tRNA 1 37 -38 6 1487 1281 105 11 0 chr5 118319440 118319631 -34217628 + B2_Mm1t SINE B2 1 193 0 6 1487 486 175 16 23 chr5 118319631 118319760 -34217499 + GA-rich Low_complexity Low_complexity 1 128 0 6 1487 279 335 73 61 chr5 118320122 118320287 -34216972 - MER20B DNA MER1_type -299 484 318 6 1487 292 310 0 48 chr5 118321236 118321341 -34215918 - MIRc SINE MIR -98 170 71 6 1487 275 330 0 55 chr5 118322074 118322183 -34215076 + B4 SINE B4 118 220 -72 6 1487 368 315 0 22 chr5 118323373 118323464 -34213795 + PB1D10 SINE Alu 10 98 -19 6 1487 846 66 0 24 chr5 118323457 118323582 -34213677 + B1_Mus1 SINE Alu 27 148 0 6 1487 527 308 86 5 chr5 118323595 118323781 -34213478 + ID_B1 SINE B4 24 224 0 6 1487 443 338 19 25 chr5 118324674 118324832 -34212427 + RSINE1 SINE B4 2 158 -7 6 1487 237 65 0 0 chr5 118324835 118324866 -34212393 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1487 23 33 0 0 chr5 118324866 118324896 -34212363 + AT_rich Low_complexity Low_complexity 1 30 0 6 1487 247 250 0 27 chr5 118325001 118325078 -34212181 + MIR SINE MIR 68 137 -139 7 1487 192 317 52 82 chr5 118326171 118326305 -34210954 + MIRm SINE MIR 87 216 -60 7 1487 1452 143 169 45 chr5 118327025 118327333 -34209926 + ORR1A1 LTR MaLR 1 346 0 7 1487 188 182 68 0 chr5 118327400 118327444 -34209815 + MIR SINE MIR 84 130 -78 7 1487 387 294 26 57 chr5 118327495 118327817 -34209442 - HAL1-2a_MD LINE L1 -493 2531 2345 7 1487 987 299 72 24 chr5 118328015 118328380 -34208879 - MTE2b LTR MaLR -2 357 2 7 1487 546 267 176 18 chr5 118328505 118328726 -34208533 + B4 SINE B4 18 273 -19 7 1487 534 54 0 0 chr5 118329701 118329775 -34207484 + (TG)n Simple_repeat Simple_repeat 2 75 0 7 1487 1178 98 23 0 chr5 118329938 118330112 -34207147 + B2_Mm2 SINE B2 4 181 -14 7 1487 218 200 100 0 chr5 118330163 118330213 -34207046 + B2_Mm2 SINE B2 47 101 -94 7 1487 516 32 0 0 chr5 118330255 118330317 -34206942 + (GA)n Simple_repeat Simple_repeat 2 63 0 7 1487 2278 127 62 18 chr5 118330332 118330733 -34206526 - MTD LTR MaLR 0 419 1 7 1487 311 324 9 0 chr5 118330746 118330851 -34206408 - L1MC LINE L1 -2063 5819 5714 7 1487 226 227 61 0 chr5 118331583 118331649 -34205610 + ID4_ SINE ID 3 72 -11 7 1487 314 183 144 41 chr5 118331829 118331926 -34205333 - PB1D10 SINE Alu -1 116 10 7 1487 1061 151 43 0 chr5 118332210 118332396 -34204863 - ORR1C2 LTR MaLR -1 383 190 7 1487 1529 159 16 96 chr5 118332397 118332773 -34204486 - ORR1A1 LTR MaLR 0 346 1 7 1487 1079 124 27 11 chr5 118332773 118332960 -34204299 - ORR1C2 LTR MaLR -194 190 1 7 1487 351 0 0 0 chr5 118333265 118333304 -34203955 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1487 551 329 25 0 chr5 118333316 118333477 -34203782 - B3A SINE B2 -33 165 1 7 1487 285 100 0 0 chr5 118333504 118333554 -34203705 + (T)n Simple_repeat Simple_repeat 1 50 0 7 1487 1084 83 0 0 chr5 118333555 118333700 -34203559 - B1_Mus1 SINE Alu -2 146 2 7 1487 473 282 77 93 chr5 118334530 118334894 -34202365 - ORR1E LTR MaLR 0 359 2 7 1487 711 0 0 0 chr5 118335660 118335739 -34201520 + (CATAG)n Simple_repeat Simple_repeat 4 82 0 7 1487 904 267 35 39 chr5 118336184 118336468 -34200791 + B4A SINE B4 2 284 -8 7 1487 192 200 0 0 chr5 118336499 118336539 -34200720 + (CATA)n Simple_repeat Simple_repeat 4 43 0 7 1487 259 179 28 12 chr5 118336563 118336656 -34200603 - MIR SINE MIR -108 168 65 7 1487 309 243 72 53 chr5 118336714 118336866 -34200393 + L1M2 LINE L1 3923 4077 -2066 7 1487 215 276 17 0 chr5 118336866 118336924 -34200335 + RSINE1 SINE B4 2 60 -105 7 1487 211 119 191 0 chr5 118337721 118337763 -34199496 + B4A SINE B4 4 53 -239 7 1487 1067 255 7 73 chr5 118337763 118338038 -34199221 + B4A SINE B4 22 278 -14 7 1487 227 214 36 0 chr5 118338063 118338119 -34199140 + (CA)n Simple_repeat Simple_repeat 2 59 0 7 1487 379 229 0 0 chr5 118338829 118338899 -34198360 - B4A SINE B4 -6 286 217 7 1487 298 257 123 45 chr5 118338901 118339021 -34198238 - Lx8 LINE L1 -6 7467 7336 7 1487 252 0 0 0 chr5 118339021 118339049 -34198210 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 7 1487 298 257 123 45 chr5 118339049 118339083 -34198176 - Lx8 LINE L1 -138 7335 7301 7 1487 434 320 104 6 chr5 118339136 118339309 -34197950 - B4A SINE B4 -96 196 7 7 1487 955 204 105 25 chr5 118340155 118340432 -34196827 - MTEb LTR MaLR 0 379 77 7 1487 822 74 5 8 chr5 118340452 118340586 -34196673 - B1_Mus2 SINE Alu 0 149 18 7 1487 404 210 64 89 chr5 118340497 118340654 -34196605 - MT2B LTR ERVL -344 257 105 7 1487 428 217 32 83 chr5 118340586 118340606 -34196653 - ID_B1 SINE B4 0 222 77 7 1487 231 96 19 37 chr5 118340807 118340861 -34196398 + C-rich Low_complexity Low_complexity 2 54 0 7 1487 302 305 15 92 chr5 118341154 118341284 -34195975 + MER47A DNA MER2_type 10 129 -237 7 1487 243 0 0 0 chr5 118341424 118341451 -34195808 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1487 274 320 144 0 chr5 118341538 118341635 -34195624 - MLT1A LTR MaLR -240 134 24 7 1487 629 182 0 14 chr5 118341894 118342033 -34195226 + (TATG)n Simple_repeat Simple_repeat 1 137 0 7 1487 382 273 229 26 chr5 118342033 118342255 -34195004 + MER2 DNA MER2_type 79 345 0 7 1487 515 211 29 9 chr5 118342298 118342403 -34194856 + ID_B1 SINE B4 79 185 -39 7 1487 336 271 12 0 chr5 118342514 118342599 -34194660 + ID_B1 SINE B4 83 168 -56 7 1487 325 207 32 95 chr5 118342740 118342849 -34194410 + B4 SINE B4 217 292 0 7 1487 906 158 0 111 chr5 118343154 118343361 -34193898 + ORR1A1 LTR MaLR 1 184 -162 7 1487 494 361 94 34 chr5 118344490 118344788 -34192471 - MLT1H LTR MaLR -208 341 26 7 1487 618 294 22 38 chr5 118344802 118344986 -34192273 + ID_B1 SINE B4 33 213 -11 7 1487 254 330 25 82 chr5 118345069 118345100 -34192159 + PB1D10 SINE Alu 1 115 -2 7 1487 453 209 11 0 chr5 118345100 118345191 -34192068 + ID_B1 SINE B4 131 222 -2 7 1487 589 161 46 3 chr5 118345192 118345519 -34191740 + (TAGA)n Simple_repeat Simple_repeat 1 341 0 7 1487 490 319 12 6 chr5 118345945 118346106 -34191153 + B4A SINE B4 1 162 -130 7 1487 260 330 78 41 chr5 118346090 118346333 -34190926 - RMER12 LTR ERVK -278 1044 793 7 1487 372 291 66 16 chr5 118346339 118346521 -34190738 - RMER12 LTR ERVK -365 957 767 7 1487 323 333 0 0 chr5 118346522 118346621 -34190638 + (CA)n Simple_repeat Simple_repeat 2 100 0 7 1487 352 296 246 39 chr5 118347158 118347418 -34189841 - Lx8 LINE L1 -11 7462 7149 7 1487 180 0 0 0 chr5 118348420 118348440 -34188819 + (CCCCCA)n Simple_repeat Simple_repeat 4 23 0 7 1487 451 256 232 27 chr5 118348616 118348801 -34188458 + B4 SINE B4 8 230 -62 7 1487 667 123 0 55 chr5 118348834 118349015 -34188244 + (CAGAGA)n Simple_repeat Simple_repeat 2 172 0 7 1487 435 106 0 0 chr5 118349046 118349112 -34188147 + (CAGG)n Simple_repeat Simple_repeat 2 67 0 7 1487 753 127 0 0 chr5 118349893 118350050 -34187209 + (TG)n Simple_repeat Simple_repeat 1 157 0 7 1487 504 86 0 0 chr5 118350050 118350101 -34187158 + (GA)n Simple_repeat Simple_repeat 2 52 0 7 1487 342 127 0 0 chr5 118350101 118350172 -34187087 + (TG)n Simple_repeat Simple_repeat 1 71 0 7 1487 504 86 0 0 chr5 118350172 118350201 -34187058 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1487 249 57 0 0 chr5 118350201 118350236 -34187023 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1487 308 195 11 79 chr5 118350239 118350328 -34186931 + PB1D10 SINE Alu 16 98 -19 7 1487 216 167 0 0 chr5 118350667 118350703 -34186556 + C-rich Low_complexity Low_complexity 1 36 0 7 1487 226 272 23 69 chr5 118351064 118351151 -34186108 + B1_Mus1 SINE Alu 1 83 -65 7 1487 34 0 0 0 chr5 118351868 118351902 -34185357 + AT_rich Low_complexity Low_complexity 1 34 0 7 1487 476 275 67 0 chr5 118351911 118352031 -34185228 - B3 SINE B2 -86 130 3 7 1487 441 204 47 37 chr5 118352218 118352325 -34184934 + PB1D7 SINE Alu 9 116 -4 7 1487 525 236 39 8 chr5 118352491 118352619 -34184640 + B1_Mur2 SINE Alu 1 132 -17 7 1487 695 223 106 25 chr5 118352621 118352819 -34184440 + B3 SINE B2 2 215 -1 7 1487 21 36 0 0 chr5 118352936 118352964 -34184295 + AT_rich Low_complexity Low_complexity 1 28 0 7 1487 1180 41 7 0 chr5 118353159 118353306 -34183953 + B1_Mus1 SINE Alu 1 148 0 7 1487 522 241 9 0 chr5 118354293 118354409 -34182850 + RSINE1 SINE B4 4 120 -45 7 1487 321 26 0 0 chr5 118354410 118354448 -34182811 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1487 225 279 135 35 chr5 118354487 118354628 -34182631 + MER96B DNA hAT 27 181 -236 7 1487 1138 250 4 25 chr5 118355770 118356049 -34181210 + B4 SINE B4 8 280 -12 7 1487 358 348 75 5 chr5 118356106 118356305 -34180954 - MER2 DNA MER2_type -45 300 88 7 1487 275 266 13 0 chr5 118356460 118356539 -34180720 - ID4_ SINE ID -2 81 2 7 1487 481 229 89 16 chr5 118356750 118356874 -34180385 + ID_B1 SINE B4 92 224 0 7 1487 268 314 94 9 chr5 118356915 118357021 -34180238 - MER5B DNA MER1_type -27 151 37 7 1488 1103 142 102 10 chr5 118358165 118358371 -34178888 + URR1B DNA MER1_type 1 225 0 7 1488 844 259 72 25 chr5 118358414 118358691 -34178568 + B4 SINE B4 1 290 -2 7 1488 1626 124 0 74 chr5 118359388 118359685 -34177574 - ORR1A1 LTR MaLR -64 282 8 7 1488 228 283 140 9 chr5 118359855 118359962 -34177297 - MER113 DNA MER1_type -279 242 122 7 1488 306 307 69 0 chr5 118360455 118360556 -34176703 + PB1D10 SINE Alu 1 108 -9 7 1488 249 83 0 0 chr5 118360984 118361020 -34176239 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1488 261 0 0 0 chr5 118361065 118361094 -34176165 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1488 222 37 0 0 chr5 118361145 118361172 -34176087 + (ATG)n Simple_repeat Simple_repeat 1 27 0 7 1488 258 189 19 0 chr5 118361533 118361586 -34175673 + CT-rich Low_complexity Low_complexity 4 57 0 7 1488 232 278 0 0 chr5 118362000 118362054 -34175205 + C-rich Low_complexity Low_complexity 1 54 0 7 1488 566 296 6 25 chr5 118362280 118362443 -34174816 + RSINE1 SINE B4 6 165 0 7 1488 225 65 0 0 chr5 118365667 118365698 -34171561 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1488 320 311 0 0 chr5 118365715 118365818 -34171441 + (TATG)n Simple_repeat Simple_repeat 1 103 0 7 1488 198 236 0 0 chr5 118365827 118365882 -34171377 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1488 183 250 10 20 chr5 118365945 118366047 -34171212 + (TATG)n Simple_repeat Simple_repeat 2 102 0 7 1488 252 328 43 0 chr5 118366080 118366196 -34171063 + RMER12 LTR ERVK 736 856 -466 7 1488 207 186 0 0 chr5 118366196 118366239 -34171020 + (CATG)n Simple_repeat Simple_repeat 4 46 0 8 1488 427 321 36 60 chr5 118366281 118366470 -34170789 + MIRc SINE MIR 30 208 -54 8 1488 763 135 0 48 chr5 118366732 118366919 -34170340 + CT-rich Low_complexity Low_complexity 3 180 0 8 1488 629 242 15 92 chr5 118367010 118367206 -34170053 - B3A SINE B2 -5 211 31 8 1488 330 223 10 87 chr5 118367339 118367442 -34169817 + B4 SINE B4 6 100 -192 8 1488 197 228 13 0 chr5 118367523 118367602 -34169657 + (CA)n Simple_repeat Simple_repeat 1 80 0 8 1488 237 179 50 25 chr5 118367676 118367756 -34169503 + A-rich Low_complexity Low_complexity 1 82 0 8 1488 386 249 85 37 chr5 118368027 118368285 -34168974 - L1MA4A LINE L1 -136 6020 5768 8 1488 313 319 123 35 chr5 118368307 118368523 -34168736 - L1MEf LINE L1 -3816 2330 2067 8 1488 1885 150 18 76 chr5 118368561 118368581 -34168678 - ORR1B1 LTR MaLR -31 363 353 8 1488 858 69 333 0 chr5 118368581 118368725 -34168534 - B2_Mm1a SINE B2 -1 192 1 8 1488 1885 150 18 76 chr5 118368725 118368758 -34168501 - ORR1B1 LTR MaLR -42 352 334 8 1488 1107 49 0 20 chr5 118368758 118368905 -34168354 + B1_Mus1 SINE Alu 5 148 0 8 1488 1885 150 18 76 chr5 118368905 118369232 -34168027 - ORR1B1 LTR MaLR -61 333 4 8 1488 240 150 0 0 chr5 118369876 118369916 -34167343 + MER5B DNA MER1_type 3 42 -136 8 1488 509 175 67 10 chr5 118369925 118370029 -34167230 + PB1D10 SINE Alu 8 117 0 8 1488 1175 117 21 0 chr5 118370417 118370444 -34166815 - B2_Mm2 SINE B2 -1 194 165 8 1488 267 31 0 0 chr5 118370444 118370476 -34166783 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 8 1488 1175 117 21 0 chr5 118370476 118370636 -34166623 - B2_Mm2 SINE B2 -31 164 4 8 1488 540 0 0 0 chr5 118370759 118370819 -34166440 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1488 1093 68 0 7 chr5 118370934 118371082 -34166177 - B1_Mm SINE Alu 0 147 1 8 1488 370 292 162 44 chr5 118371082 118371286 -34165973 - B4 SINE B4 -63 229 2 8 1488 1310 79 16 10 chr5 118371629 118371821 -34165438 + B2_Mm1a SINE B2 1 193 0 8 1488 398 292 21 42 chr5 118371840 118371983 -34165276 + B4A SINE B4 7 146 -146 8 1488 249 293 0 17 chr5 118372027 118372086 -34165173 + B4 SINE B4 234 291 -1 8 1488 1306 81 22 0 chr5 118372484 118372669 -34164590 - B2_Mm1t SINE B2 -3 190 2 8 1488 301 263 116 0 chr5 118373069 118373164 -34164095 - MLT1B LTR MaLR -280 110 5 8 1488 189 0 0 0 chr5 118373176 118373197 -34164062 + (CA)n Simple_repeat Simple_repeat 1 21 0 8 1488 206 208 0 19 chr5 118373548 118373602 -34163657 + GA-rich Low_complexity Low_complexity 2 54 0 8 1488 820 136 228 0 chr5 118374053 118374237 -34163022 - URR1A DNA MER1_type 0 226 1 8 1488 340 374 90 25 chr5 118374246 118374490 -34162769 - L1ME1 LINE L1 -175 6004 5745 8 1488 254 320 100 30 chr5 118374574 118374674 -34162585 + PB1 SINE Alu 8 114 -6 8 1488 213 300 24 36 chr5 118374962 118375045 -34162214 + (TGGG)n Simple_repeat Simple_repeat 2 83 0 8 1488 630 167 33 0 chr5 118375090 118375303 -34161956 + (TGGA)n Simple_repeat Simple_repeat 1 220 0 8 1488 274 295 12 0 chr5 118375274 118375447 -34161812 + (TGGG)n Simple_repeat Simple_repeat 2 176 0 8 1488 249 224 17 17 chr5 118375477 118375536 -34161723 + GA-rich Low_complexity Low_complexity 1 59 0 8 1488 1037 257 21 18 chr5 118376049 118376334 -34160925 + B4 SINE B4 1 286 -6 8 1488 777 170 146 54 chr5 118376854 118377059 -34160200 + URR1B DNA MER1_type 1 224 -1 8 1488 554 264 102 11 chr5 118377362 118377394 -34159865 - B3A SINE B2 -4 194 163 8 1488 306 67 0 0 chr5 118377394 118377439 -34159820 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 8 1488 554 264 102 11 chr5 118377439 118377582 -34159677 - B3A SINE B2 -36 162 3 8 1488 311 262 71 12 chr5 118377582 118377661 -34159598 - B4A SINE B4 -207 85 2 8 1488 251 290 0 0 chr5 118377775 118377837 -34159422 - ID SINE ID -140 84 23 8 1488 1346 76 38 0 chr5 118378276 118378461 -34158798 + B2_Mm2 SINE B2 2 193 -2 8 1488 195 246 0 90 chr5 118378560 118378627 -34158632 + MIR SINE MIR 45 105 -103 8 1488 757 182 135 26 chr5 118378643 118378835 -34158424 + B3 SINE B2 4 216 0 8 1488 316 261 0 32 chr5 118379208 118379303 -34157956 - L3 LINE CR1 -859 3630 3539 8 1488 1000 227 5 29 chr5 118379683 118379887 -34157372 + B3 SINE B2 17 215 -1 8 1488 1129 74 0 0 chr5 118379897 118380045 -34157214 - B1_Mus1 SINE Alu 0 148 1 8 1488 204 301 0 0 chr5 118380572 118380675 -34156584 + (TG)n Simple_repeat Simple_repeat 2 104 0 8 1488 185 335 6 0 chr5 118380633 118380803 -34156456 + (TATATG)n Simple_repeat Simple_repeat 5 175 0 8 1488 657 293 69 72 chr5 118380813 118381104 -34156155 - B4A SINE B4 0 292 3 8 1488 454 286 0 96 chr5 118381388 118381559 -34155700 + B1F SINE Alu 2 133 -14 8 1488 970 110 14 0 chr5 118381979 118382125 -34155134 - B1_Mus1 SINE Alu 0 148 1 8 1488 333 162 0 0 chr5 118382217 118382285 -34154974 + (TG)n Simple_repeat Simple_repeat 2 69 0 8 1488 554 188 99 33 chr5 118382431 118382552 -34154707 + B1F SINE Alu 9 137 -12 8 1488 198 0 0 0 chr5 118382563 118382585 -34154674 + (GGA)n Simple_repeat Simple_repeat 3 24 0 8 1488 198 0 0 0 chr5 118382942 118382964 -34154295 + (G)n Simple_repeat Simple_repeat 1 22 0 8 1488 459 307 59 32 chr5 118383983 118384202 -34153057 - B4 SINE B4 -63 229 5 8 1488 797 142 15 0 chr5 118384198 118384332 -34152927 - B3 SINE B2 -80 136 1 8 1488 1030 36 80 0 chr5 118384366 118384503 -34152756 - B1_Mus1 SINE Alu 0 148 1 8 1488 216 260 0 0 chr5 118384579 118384629 -34152630 - ID4_ SINE ID 0 83 34 8 1488 339 247 93 3 chr5 118384803 118384925 -34152334 - B1F SINE Alu 0 149 21 8 1488 216 0 0 0 chr5 118384942 118384966 -34152293 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1488 720 209 15 0 chr5 118384985 118385119 -34152140 - B1_Mur2 SINE Alu -12 137 2 8 1488 644 236 132 0 chr5 118385161 118385335 -34151924 - B3 SINE B2 -19 197 1 8 1488 598 237 50 0 chr5 118385534 118385673 -34151586 + RSINE1 SINE B4 3 148 -17 8 1488 199 323 145 5 chr5 118385873 118386066 -34151193 - L2a LINE L2 -5 3421 3202 8 1488 458 221 8 45 chr5 118386760 118387027 -34150232 + CT-rich Low_complexity Low_complexity 1 256 0 8 1488 312 360 0 0 chr5 118387028 118387117 -34150142 + C-rich Low_complexity Low_complexity 3 91 0 8 1488 427 253 0 0 chr5 118387123 118387214 -34150045 - PB1D10 SINE Alu -26 91 1 8 1488 900 247 61 104 chr5 118387606 118387932 -34149327 - MER2 DNA MER2_type -30 315 4 8 1488 211 277 0 0 chr5 118387974 118388021 -34149238 + (CACG)n Simple_repeat Simple_repeat 4 50 0 8 1488 272 246 65 19 chr5 118388023 118388145 -34149114 + MIR SINE MIR 79 217 -59 8 1488 824 243 17 0 chr5 118388810 118388887 -34148372 + ID SINE ID 2 81 -143 8 1488 409 291 0 25 chr5 118388887 118389007 -34148252 + PB1D10 SINE Alu 1 117 0 8 1488 559 265 90 26 chr5 118389017 118389172 -34148087 + RSINE1 SINE B4 1 165 0 8 1488 870 188 80 75 chr5 118389199 118389412 -34147847 + B3 SINE B2 3 216 0 8 1488 447 54 0 12 chr5 118389898 118390005 -34147254 - B2_Mm2 SINE B2 -7 188 47 8 1488 1392 68 11 0 chr5 118390033 118390209 -34147050 - B2_Mm1t SINE B2 -14 179 2 8 1488 1420 77 38 0 chr5 118390213 118390396 -34146863 - B2_Mm2 SINE B2 -5 190 1 8 1488 474 277 34 58 chr5 118390428 118390635 -34146624 - LTR16B2 LTR ERVL -69 393 192 8 1488 814 199 33 23 chr5 118390832 118391051 -34146208 + B3A SINE B2 2 216 0 8 1488 762 298 72 30 chr5 118391053 118391129 -34146130 + ORR1E LTR MaLR 9 83 -276 8 1488 1380 72 44 0 chr5 118391129 118391310 -34145949 - B2_Mm2 SINE B2 -6 189 1 8 1488 762 298 72 30 chr5 118391310 118391565 -34145694 + ORR1E LTR MaLR 84 353 -6 8 1488 723 246 45 6 chr5 118391636 118391812 -34145447 + B3A SINE B2 1 183 -15 8 1488 234 81 0 0 chr5 118391865 118391902 -34145357 + (CA)n Simple_repeat Simple_repeat 2 38 0 8 1488 194 191 0 21 chr5 118392297 118392345 -34144914 + GA-rich Low_complexity Low_complexity 4 50 0 8 1488 436 346 104 4 chr5 118392361 118392602 -34144657 + MLT1A0 LTR MaLR 72 336 -29 8 1488 1113 247 43 78 chr5 118392626 118392973 -34144286 - ORR1E LTR MaLR -23 336 2 8 1488 229 343 0 0 chr5 118394170 118394240 -34143019 - MER20 DNA MER1_type -124 95 26 8 1488 230 330 97 38 chr5 118394285 118394309 -34142950 - B3A SINE B2 -1 197 1 8 1488 505 256 49 37 chr5 118394309 118394471 -34142788 - RSINE1 SINE B4 0 165 2 8 1488 910 138 89 6 chr5 118394795 118394963 -34142296 + B2_Mm1a SINE B2 2 183 -10 8 1488 941 297 19 74 chr5 118394967 118395276 -34141983 + B4A SINE B4 1 292 0 8 1488 189 74 0 0 chr5 118395276 118395303 -34141956 + (CATA)n Simple_repeat Simple_repeat 3 29 0 8 1488 318 138 37 12 chr5 118395303 118395384 -34141875 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 8 1488 350 346 45 8 chr5 118395428 118395562 -34141697 + MER20 DNA MER1_type 25 163 -56 8 1488 468 0 0 0 chr5 118396226 118396278 -34140981 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1488 396 0 0 0 chr5 118396278 118396321 -34140938 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1488 290 314 27 62 chr5 118396445 118396478 -34140781 + MT2B LTR ERVL 138 165 -436 8 1488 435 220 114 6 chr5 118396478 118396598 -34140661 + B1_Mur1 SINE Alu 3 129 -20 8 1488 548 99 66 0 chr5 118396598 118396749 -34140510 + (TAGA)n Simple_repeat Simple_repeat 2 162 0 8 1488 315 255 159 11 chr5 118397032 118397170 -34140089 - MIR SINE MIR -111 151 7 8 1488 207 69 0 0 chr5 118397642 118397671 -34139588 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1488 924 210 210 46 chr5 118397673 118397997 -34139262 + MTE2a LTR MaLR 3 379 0 9 1488 325 302 31 20 chr5 118398102 118398200 -34139059 - B1F SINE Alu -15 134 36 9 1488 318 309 53 0 chr5 118398117 118398211 -34139048 - ID_B1 SINE B4 -25 199 101 9 1488 463 279 9 0 chr5 118398307 118398418 -34138841 + PB1D10 SINE Alu 5 116 -1 9 1488 1199 293 25 41 chr5 118398926 118399293 -34137966 - MTEa LTR MaLR -1 378 18 9 1488 349 330 87 22 chr5 118399342 118399525 -34137734 + LTR16E2 LTR ERVL 336 530 -38 9 1488 400 299 41 102 chr5 118400065 118400262 -34136997 + B4 SINE B4 29 213 -79 9 1488 719 129 13 86 chr5 118400134 118400286 -34136973 + B1_Mur4 SINE Alu 10 150 0 9 1488 180 0 114 0 chr5 118400286 118400321 -34136938 + (CAAAA)n Simple_repeat Simple_repeat 5 43 0 9 1488 313 256 94 47 chr5 118400332 118400459 -34136800 + MER91A DNA Tip100 56 188 -8 9 1488 645 206 44 0 chr5 118400602 118400738 -34136521 - RSINE1 SINE B4 -22 143 2 9 1488 958 265 37 19 chr5 118400817 118401086 -34136173 + B4A SINE B4 1 274 -18 9 1488 192 77 0 0 chr5 118401087 118401113 -34136146 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1488 333 0 0 0 chr5 118401121 118401158 -34136101 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1488 180 97 0 0 chr5 118401594 118401625 -34135634 + (C)n Simple_repeat Simple_repeat 1 31 0 9 1488 282 268 14 0 chr5 118401626 118401697 -34135562 - ID4_ SINE ID -11 72 1 9 1488 329 344 18 41 chr5 118401773 118401943 -34135316 - RLTR23 LTR ERV1 0 430 265 9 1488 306 0 0 0 chr5 118402416 118402450 -34134809 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1488 244 254 60 0 chr5 118403014 118403081 -34134178 + PB1D7 SINE Alu 50 120 0 9 1488 307 21 42 21 chr5 118403407 118403455 -34133804 + (CCCCCA)n Simple_repeat Simple_repeat 4 52 0 9 1488 476 170 0 33 chr5 118403583 118403674 -34133585 - B3A SINE B2 -81 117 30 9 1488 443 219 329 0 chr5 118405265 118405420 -34131839 - ID_B1 SINE B4 -16 208 3 9 1488 231 200 246 0 chr5 118405968 118406033 -34131226 - ID SINE ID -143 81 1 9 1488 648 0 0 0 chr5 118406956 118407028 -34130231 + (TC)n Simple_repeat Simple_repeat 1 72 0 9 1488 432 37 0 0 chr5 118407028 118407081 -34130178 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1488 250 216 39 39 chr5 118407433 118407510 -34129749 + ID4_ SINE ID 3 79 -4 9 1488 372 333 30 30 chr5 118407906 118408070 -34129189 - MER20 DNA MER1_type -27 192 29 9 1488 187 333 87 19 chr5 118408164 118408268 -34128991 - L2b LINE L2 -182 3193 3083 9 1488 1197 218 10 0 chr5 118409271 118409477 -34127782 + B3 SINE B2 1 208 -8 9 1488 494 250 105 0 chr5 118409698 118409822 -34127437 + RSINE1 SINE B4 9 145 -20 9 1488 423 56 0 0 chr5 118409822 118409876 -34127383 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1488 495 275 67 0 chr5 118410265 118410414 -34126845 + MIR SINE MIR 47 205 -57 9 1488 396 261 11 0 chr5 118410419 118410507 -34126752 + (CGGGA)n Simple_repeat Simple_repeat 3 91 0 9 1488 510 207 6 11 chr5 118410507 118410688 -34126571 + GA-rich Low_complexity Low_complexity 1 180 0 9 1488 1381 134 37 5 chr5 118411234 118411451 -34125808 + URR1B DNA MER1_type 2 225 0 9 1488 424 228 128 20 chr5 118411472 118411620 -34125639 + RSINE1 SINE B4 2 165 0 9 1488 618 237 7 14 chr5 118411661 118411802 -34125457 + ID_B1 SINE B4 84 223 -1 9 1488 536 149 128 32 chr5 118411813 118411938 -34125321 + B1_Mus1 SINE Alu 6 142 -6 9 1488 711 133 0 0 chr5 118411939 118412067 -34125192 + (GA)n Simple_repeat Simple_repeat 2 129 0 9 1488 592 261 67 24 chr5 118412126 118412334 -34124925 + B4A SINE B4 2 218 -74 9 1488 629 47 12 0 chr5 118412337 118412422 -34124837 + (TTATA)n Simple_repeat Simple_repeat 1 86 0 9 1488 213 39 0 0 chr5 118412477 118412503 -34124756 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1488 1206 75 0 0 chr5 118412538 118412685 -34124574 - B1_Mm SINE Alu 0 147 1 9 1488 405 0 0 0 chr5 118412910 118412955 -34124304 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1488 322 260 211 0 chr5 118413391 118413514 -34123745 - MTE2b LTR MaLR -3 376 228 9 1488 551 320 0 7 chr5 118413536 118413687 -34123572 - MTE2b LTR MaLR -223 156 7 9 1488 308 309 56 49 chr5 118414349 118414492 -34122767 + MLT1D LTR MaLR 289 432 -73 9 1488 653 218 7 34 chr5 118414534 118414681 -34122578 - B1_Mur1 SINE Alu -2 147 5 9 1488 255 373 55 55 chr5 118414886 118415212 -34122047 - MLT1D LTR MaLR -179 326 1 9 1488 1443 73 15 50 chr5 118415898 118416100 -34121159 + B2_Mm2 SINE B2 1 195 0 9 1488 550 254 37 0 chr5 118416221 118416355 -34120904 - B3A SINE B2 -22 176 38 9 1488 634 238 151 22 chr5 118416390 118416575 -34120684 - B3 SINE B2 -4 212 4 9 1488 306 125 0 0 chr5 118416578 118416626 -34120633 + (ATTG)n Simple_repeat Simple_repeat 2 49 0 9 1488 243 0 0 0 chr5 118416811 118416838 -34120421 + (AGCTG)n Simple_repeat Simple_repeat 2 28 0 9 1488 357 242 0 0 chr5 118417296 118417387 -34119872 + GA-rich Low_complexity Low_complexity 2 92 0 9 1488 213 39 0 0 chr5 118417700 118417726 -34119533 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1488 1065 294 16 38 chr5 118417756 118418071 -34119188 - Lx8 LINE L1 -535 6938 6631 9 1488 306 346 10 0 chr5 118418057 118418161 -34119098 + Lx8 LINE L1 7013 7117 -356 9 1488 269 248 93 5 chr5 118418385 118418523 -34118736 - B3A SINE B2 -33 162 8 9 1488 402 320 19 68 chr5 118418567 118418728 -34118531 + LTR31 LTR ERV1 224 376 -243 9 1488 575 279 26 47 chr5 118418797 118418989 -34118270 - B3A SINE B2 0 198 11 9 1488 1071 88 7 13 chr5 118419256 118419405 -34117854 + B1_Mus1 SINE Alu 1 148 0 9 1488 191 88 29 0 chr5 118419409 118419443 -34117816 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1488 723 266 12 6 chr5 118419462 118419631 -34117628 - ID_B1 SINE B4 -2 222 53 9 1488 308 255 173 69 chr5 118419631 118419833 -34117426 + URR1B DNA MER1_type 1 223 -2 9 1488 234 175 51 34 chr5 118419833 118419885 -34117374 - ID4_ SINE ID -29 54 2 9 1488 305 242 94 10 chr5 118420211 118420307 -34116952 - B3A SINE B2 -21 177 74 9 1488 461 228 43 28 chr5 118420683 118420815 -34116444 - B1_Mus2 SINE Alu -10 137 8 9 1488 200 111 0 27 chr5 118420826 118420863 -34116396 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 9 1488 229 278 14 14 chr5 118420866 118420939 -34116320 - BC1_Mm scRNA scRNA -55 97 25 9 1488 192 40 0 0 chr5 118421033 118421058 -34116201 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9 1488 621 218 162 28 chr5 118421192 118421371 -34115888 + B3 SINE B2 7 209 -7 9 1488 291 291 0 95 chr5 118421390 118421485 -34115774 + MT2B LTR ERVL 155 240 -361 9 1488 472 221 5 7 chr5 118421400 118421511 -34115748 + B1_Mur3 SINE Alu 1 110 -7 9 1488 634 307 65 9 chr5 118421740 118421957 -34115302 + MER67C LTR ERV1 154 382 -329 9 1488 194 0 39 0 chr5 118422238 118422264 -34114995 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1488 305 23 68 0 chr5 118422437 118422481 -34114778 + (ATGGTG)n Simple_repeat Simple_repeat 5 51 0 9 1488 191 319 25 145 chr5 118422737 118422908 -34114351 - MIR SINE MIR -37 231 73 9 1488 495 246 30 15 chr5 118422926 118423058 -34114201 - MTE2a LTR MaLR -6 373 240 9 1488 1322 102 11 0 chr5 118423058 118423235 -34114024 + B2_Mm1t SINE B2 1 179 -14 9 1488 453 288 13 46 chr5 118423235 118423262 -34113997 - MTE2a LTR MaLR -137 282 258 9 1488 330 90 324 27 chr5 118423283 118423394 -34113865 + B2_Mm2 SINE B2 47 190 -5 9 1488 473 266 109 85 chr5 118423390 118423673 -34113586 - MTE2a LTR MaLR -160 259 1 9 1488 201 94 0 0 chr5 118424298 118424330 -34112929 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 9 1488 491 309 37 0 chr5 118424341 118424477 -34112782 + RSINE1 SINE B4 11 151 -14 9 1488 1834 142 37 88 chr5 118424481 118425096 -34112163 + RMER16 LTR ERVK 1 533 0 9 1488 258 267 0 0 chr5 118425180 118425270 -34111989 + (CA)n Simple_repeat Simple_repeat 1 90 0 9 1488 344 256 7 117 chr5 118425275 118425289 -34111970 + MT2B LTR ERVL 153 221 -380 9 1488 829 78 0 0 chr5 118425289 118425404 -34111855 + B1_Mus1 SINE Alu 1 115 -33 9 1488 660 291 34 24 chr5 118425796 118426004 -34111255 + ID_B1 SINE B4 6 215 -9 9 1488 259 241 144 33 chr5 118426008 118426098 -34111161 - PB1D10 SINE Alu -8 109 10 9 1488 216 0 0 0 chr5 118426171 118426195 -34111064 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1488 1173 44 0 0 chr5 118426195 118426331 -34110928 - B1_Mus1 SINE Alu -10 138 3 9 1488 768 188 30 0 chr5 118426349 118426482 -34110777 - B1_Mus1 SINE Alu -7 141 5 9 1488 473 106 35 23 chr5 118426482 118426569 -34110690 - U6 snRNA snRNA -19 88 1 9 1488 23 92 0 0 chr5 118427087 118427152 -34110107 + GC_rich Low_complexity Low_complexity 1 65 0 9 1488 366 23 0 0 chr5 118428027 118428070 -34109189 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1488 299 228 107 19 chr5 118428492 118428595 -34108664 - PB1D10 SINE Alu -5 112 1 9 1488 246 32 0 0 chr5 118429893 118429924 -34107335 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 1488 396 273 86 0 chr5 118430033 118430161 -34107098 + B1F SINE Alu 11 149 0 9 1488 481 234 63 42 chr5 118430526 118430669 -34106590 + B3A SINE B2 2 147 -51 9 1488 198 103 0 0 chr5 118431225 118431254 -34106005 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1488 745 148 33 0 chr5 118431284 118431406 -34105853 - B3 SINE B2 -90 126 1 9 1488 523 261 122 31 chr5 118432658 118433018 -34104241 + L1M7 LINE L1 1318 1710 -4508 9 1488 358 312 180 0 chr5 118433123 118433251 -34104008 + RSINE1 SINE B4 11 161 -4 1 1488 334 191 66 12 chr5 118433618 118433714 -34103545 + L1MC3 LINE L1 6735 6829 -956 1 1488 216 262 37 24 chr5 118434059 118434141 -34103118 - PB1D9 SINE Alu -1 119 37 1 1488 974 182 0 11 chr5 118434626 118434809 -34102450 + URR1A DNA MER1_type 1 181 -45 1 1488 625 263 244 0 chr5 118436381 118436598 -34100661 + B4 SINE B4 16 285 -7 1 1488 22 0 0 0 chr5 118437581 118437603 -34099656 + AT_rich Low_complexity Low_complexity 1 22 0 1 1488 420 212 59 50 chr5 118437670 118437789 -34099470 - PB1D9 SINE Alu 0 120 1 1 1488 231 315 36 18 chr5 118440066 118440176 -34097083 + YREP_Mm Unknown Unknown 198 309 -1503 1 1488 556 146 52 0 chr5 118440078 118440174 -34097085 - PB1D7 SINE Alu -8 112 12 1 1488 258 227 241 18 chr5 118440174 118440190 -34097069 - B4A SINE B4 -73 219 83 1 1488 248 0 31 0 chr5 118440209 118440241 -34097018 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 1 1488 1210 41 0 33 chr5 118440241 118440384 -34096875 - B1_Mus2 SINE Alu -7 140 1 1 1488 455 228 10 19 chr5 118440564 118440667 -34096592 + PB1D10 SINE Alu 5 106 -11 1 1488 355 171 57 81 chr5 118441896 118442014 -34095245 - B1F SINE Alu -2 125 1 1 1488 286 119 191 15 chr5 118442322 118442390 -34094869 + PB1D7 SINE Alu 40 119 -1 1 1488 234 0 0 0 chr5 118442741 118442767 -34094492 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1488 468 226 35 49 chr5 118442772 118442897 -34094362 - RSINE1 SINE B4 -40 125 2 1 1488 389 252 98 0 chr5 118443040 118443163 -34094096 - B1_Mur1 SINE Alu -14 135 1 1 1488 1287 34 0 0 chr5 118443347 118443494 -34093765 - B1_Mm SINE Alu 0 147 1 1 1488 424 221 154 8 chr5 118444180 118444303 -34092956 - RSINE1 SINE B4 -14 151 11 1 1488 1264 48 0 0 chr5 118446199 118446345 -34090914 + B1_Mus1 SINE Alu 3 148 0 1 1488 222 118 0 0 chr5 118446345 118446379 -34090880 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1488 413 279 164 98 chr5 118446391 118446574 -34090685 + B3 SINE B2 1 195 0 1 1488 191 288 53 95 chr5 118447273 118447442 -34089817 + MIRc SINE MIR 35 196 -72 1 1488 274 289 206 0 chr5 118448857 118448954 -34088305 - PB1D10 SINE Alu 0 117 1 1 1488 228 67 0 0 chr5 118450141 118450171 -34087088 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1488 216 97 0 0 chr5 118451111 118451142 -34086117 + (TCC)n Simple_repeat Simple_repeat 2 32 0 1 1488 1155 51 0 7 chr5 118451548 118451687 -34085572 - B1_Mm SINE Alu -9 138 1 1 1488 707 220 50 0 chr5 118451703 118451844 -34085415 + B1_Mur2 SINE Alu 1 148 -1 1 1488 231 36 0 0 chr5 118454259 118454287 -34082972 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1488 214 328 208 0 chr5 118454316 118454441 -34082818 - RSINE1 SINE B4 -11 154 4 1 1488 320 296 57 58 chr5 118454466 118454672 -34082587 - B3A SINE B2 0 198 1 1 1488 442 305 52 0 chr5 118455163 118455317 -34081942 - RSINE1 SINE B4 0 165 4 1 1488 284 245 170 20 chr5 118455742 118455842 -34081417 + PB1D10 SINE Alu 3 117 0 1 1488 295 214 84 14 chr5 118455847 118455918 -34081341 + ID2 SINE ID 3 78 -5 1 1488 299 51 40 86 chr5 118457085 118457236 -34080023 + (TG)n Simple_repeat Simple_repeat 1 144 0 1 1488 225 0 0 0 chr5 118458227 118458252 -34079007 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1 1488 228 135 0 0 chr5 118460135 118460172 -34077087 + (T)n Simple_repeat Simple_repeat 1 37 0 1 1488 254 260 232 16 chr5 118461404 118461529 -34075730 - MLT1J1 LTR MaLR -26 418 267 1 1488 230 286 0 93 chr5 118462011 118462119 -34075140 - L1M2 LINE L1 -462 5829 5732 1 1488 346 280 16 0 chr5 118462697 118462822 -34074437 + (CA)n Simple_repeat Simple_repeat 2 128 0 1 1488 1033 66 0 0 chr5 118462889 118463025 -34074234 + B1_Mus1 SINE Alu 6 141 -7 1 1488 288 0 0 0 chr5 118463028 118463060 -34074199 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 1 1488 198 0 0 0 chr5 118463759 118463781 -34073478 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1488 1505 52 16 5 chr5 118463832 118464024 -34073235 - B2_Mm2 SINE B2 0 195 2 1 1488 228 358 10 21 chr5 118464350 118464447 -34072812 - MIRc SINE MIR -121 147 52 1 1488 432 55 0 0 chr5 118465617 118465672 -34071587 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1488 288 210 72 6 chr5 118465969 118466053 -34071206 + B1F SINE Alu 30 115 -2 1 1488 21 0 0 0 chr5 118466053 118466074 -34071185 + AT_rich Low_complexity Low_complexity 1 21 0 1 1488 432 214 19 48 chr5 118466166 118466269 -34070990 + PB1D10 SINE Alu 3 102 -15 1 1488 1647 36 0 0 chr5 118466502 118466694 -34070565 - B2_Mm1a SINE B2 0 193 2 1 1488 439 291 48 34 chr5 118466782 118466928 -34070331 + RSINE1 SINE B4 18 165 0 1 1488 1209 55 0 0 chr5 118466943 118467089 -34070170 - B1_Mm SINE Alu 0 147 2 1 1488 606 202 23 8 chr5 118467126 118467256 -34070003 + ID_B1 SINE B4 85 216 -8 1 1488 468 0 0 0 chr5 118467783 118467835 -34069424 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1488 711 250 26 7 chr5 118468214 118468367 -34068892 + RSINE1 SINE B4 2 157 -8 1 1488 198 240 0 0 chr5 118468377 118468427 -34068832 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1488 336 191 103 35 chr5 118468468 118468555 -34068704 - RSINE1 SINE B4 0 165 73 1 1488 411 21 0 0 chr5 118468831 118468879 -34068380 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1488 254 293 13 13 chr5 118469720 118469796 -34067463 + MIR3 SINE MIR 108 183 -25 1 1488 211 245 20 0 chr5 118470910 118470959 -34066300 + MIRc SINE MIR 107 156 -112 1 1488 273 247 0 102 chr5 118471164 118471225 -34066034 + L1M3 LINE L1 5678 5737 -446 1 1488 1076 103 7 0 chr5 118471225 118471370 -34065889 + B1_Mus2 SINE Alu 2 147 0 1 1488 273 247 0 102 chr5 118471370 118471416 -34065843 + L1M3 LINE L1 5738 5774 -409 1 1488 231 36 0 0 chr5 118472709 118472737 -34064522 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1488 954 90 0 0 chr5 118472745 118472879 -34064380 - B1_Mus1 SINE Alu -6 142 9 1 1488 432 211 78 106 chr5 118472784 118472964 -34064295 - MT2B LTR ERVL -344 257 83 1 1488 1671 42 0 0 chr5 118473599 118473792 -34063467 + B2_Mm1a SINE B2 1 193 0 1 1488 1293 113 5 16 chr5 118473810 118473999 -34063260 + B2_Mm1t SINE B2 1 187 -6 1 1488 1598 36 0 20 chr5 118474002 118474199 -34063060 + B2_Mm1a SINE B2 1 193 0 1 1488 195 42 0 0 chr5 118474201 118474225 -34063034 + (GGA)n Simple_repeat Simple_repeat 3 26 0 1 1488 582 15 0 0 chr5 118474302 118474369 -34062890 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 1488 709 237 156 0 chr5 118474370 118474556 -34062703 - ID_B1 SINE B4 -9 215 1 1 1488 465 250 10 0 chr5 118474561 118474661 -34062598 - PB1D7 SINE Alu -7 113 13 1 1488 1766 16 0 0 chr5 118474770 118474963 -34062296 - B2_Mm1a SINE B2 0 193 1 1 1488 1113 88 0 26 chr5 118475078 118475229 -34062030 + B1_Mus2 SINE Alu 1 147 0 1 1488 635 67 11 0 chr5 118475231 118475320 -34061939 + (GAAA)n Simple_repeat Simple_repeat 2 91 0 1 1488 315 325 42 67 chr5 118475723 118475888 -34061371 - MIRc SINE MIR -101 167 7 1 1488 221 293 0 128 chr5 118476378 118476464 -34060795 + L2c LINE L2 3312 3386 -1 1 1488 24 0 0 0 chr5 118477911 118477935 -34059324 + GC_rich Low_complexity Low_complexity 1 24 0 1 1488 206 188 0 0 chr5 118478071 118478119 -34059140 + MIR SINE MIR 80 127 -135 1 1488 250 217 173 22 chr5 118478650 118478754 -34058505 + MIR3 SINE MIR 59 176 -32 1 1488 292 263 55 10 chr5 118479317 118479421 -34057838 - PB1D7 SINE Alu -9 111 1 1 1488 22 0 0 0 chr5 118479829 118479851 -34057408 + GC_rich Low_complexity Low_complexity 1 22 0 1 1488 229 270 0 0 chr5 118480256 118480316 -34056943 + MIR SINE MIR 103 158 -110 1 1488 232 359 28 19 chr5 118480298 118480406 -34056853 + MIRc SINE MIR 31 139 -129 1 1488 183 324 29 0 chr5 118480633 118480701 -34056558 - MIR SINE MIR -79 129 60 1 1488 180 91 22 43 chr5 118481035 118481081 -34056178 + C-rich Low_complexity Low_complexity 6 50 0 1 1488 1250 54 0 0 chr5 118482096 118482244 -34055015 + B1_Mus1 SINE Alu 1 148 0 1 1488 629 219 0 0 chr5 118482368 118482487 -34054772 - PB1D9 SINE Alu 0 120 2 1 1488 599 103 10 0 chr5 118482497 118482594 -34054665 + (TC)n Simple_repeat Simple_repeat 2 99 0 1 1488 2938 35 3 11 chr5 118482643 118482992 -34054267 - ORR1A1 LTR MaLR 0 346 1 1 1488 246 303 66 0 chr5 118484272 118484348 -34052911 + ID4_ SINE ID 1 81 -2 1 1488 1002 142 0 39 chr5 118484373 118484527 -34052732 + B1_Mur4 SINE Alu 2 149 -1 1 1488 545 228 9 0 chr5 118484603 118484717 -34052542 + ID_B1 SINE B4 106 220 -4 1 1488 225 220 0 39 chr5 118484929 118484981 -34052278 - RSINE1 SINE B4 -115 50 1 1 1488 1413 109 5 0 chr5 118485321 118485513 -34051746 - B2_Mm1a SINE B2 0 193 1 1 1488 296 326 42 7 chr5 118485703 118485845 -34051414 - L1MEd LINE L1 -4988 1131 985 1 1488 1912 128 210 23 chr5 118485865 118486218 -34051041 + MTC LTR MaLR 1 419 -2 1 1488 368 205 72 0 chr5 118486760 118486843 -34050416 - PB1D7 SINE Alu -14 106 18 1 1488 252 290 0 0 chr5 118486794 118486856 -34050403 - B4A SINE B4 -141 151 90 1 1488 207 262 88 0 chr5 118487250 118487330 -34049929 + MIRc SINE MIR 83 169 -99 1 1488 191 132 38 0 chr5 118487742 118487795 -34049464 + A-rich Low_complexity Low_complexity 3 57 0 1 1488 643 251 173 24 chr5 118488218 118488466 -34048793 + B4A SINE B4 8 292 0 1 1488 644 209 6 0 chr5 118488471 118488643 -34048616 + (CA)n Simple_repeat Simple_repeat 2 174 0 1 1488 454 206 13 26 chr5 118488655 118488889 -34048370 + (CA)n Simple_repeat Simple_repeat 1 230 0 1 23 321 296 98 47 chr5 118488897 118489152 -34048107 - L1MB5 LINE L1 -33 6151 5884 1 1489 3054 59 200 9 chr5 118489927 118490357 -34046902 - RLTR1B LTR ERV1 0 512 1 1 1489 228 235 0 120 chr5 118490427 118490492 -34046767 + MER33 DNA MER1_type 159 219 -105 1 1489 1526 42 15 30 chr5 118490492 118490689 -34046570 + B2_Mm2 SINE B2 2 195 0 1 1489 228 235 0 120 chr5 118490689 118490715 -34046544 + MER33 DNA MER1_type 220 239 -85 1 1489 666 97 151 50 chr5 118490775 118490894 -34046365 + B1_Mur2 SINE Alu 4 134 -15 1 1489 2195 121 28 83 chr5 118490895 118491268 -34045991 + RMER6C LTR ERVK 3 345 -345 1 1489 306 0 0 0 chr5 118491268 118491302 -34045957 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 1 1489 2195 121 28 83 chr5 118491302 118491361 -34045898 + RMER6C LTR ERVK 346 410 -280 1 1489 1442 77 47 8 chr5 118491327 118491588 -34045671 + ORR1A2 LTR MaLR 41 305 -41 1 1489 1212 55 7 0 chr5 118491588 118491734 -34045525 + B1_Mus2 SINE Alu 1 147 0 1 1489 198 0 79 26 chr5 118491735 118491773 -34045486 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1489 371 125 0 0 chr5 118491774 118491830 -34045429 + ORR1A2 LTR MaLR 274 329 0 1 1489 1547 119 15 37 chr5 118491831 118492102 -34045157 + RMER6C LTR ERVK 426 690 0 1 1489 450 277 97 137 chr5 118492135 118492245 -34045014 + ID_B1 SINE B4 7 113 -111 1 1489 1355 55 0 11 chr5 118492245 118492427 -34044832 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1489 1221 68 0 0 chr5 118492427 118492574 -34044685 - B1_Mus1 SINE Alu -1 147 1 1 1489 450 277 97 137 chr5 118492574 118492688 -34044571 + ID_B1 SINE B4 114 222 -2 1 1489 596 215 348 0 chr5 118493054 118493212 -34044047 + ID_B1 SINE B4 2 214 -10 1 1489 1014 201 28 99 chr5 118493525 118493554 -34043705 - RLTR15 LTR ERVK -30 329 303 1 1489 1046 99 117 0 chr5 118493554 118493725 -34043534 - B2_Mm1a SINE B2 0 193 3 1 1489 1014 201 28 99 chr5 118493725 118494049 -34043210 - RLTR15 LTR ERVK -57 302 1 1 1489 315 0 0 0 chr5 118494216 118494251 -34043008 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1489 468 0 0 0 chr5 118494252 118494304 -34042955 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1489 654 303 0 0 chr5 118494360 118494515 -34042744 + ID_B1 SINE B4 44 198 -26 1 1489 451 274 32 16 chr5 118494402 118494528 -34042731 + B1F1 SINE Alu 5 132 -17 1 1489 226 351 64 64 chr5 118494528 118494601 -34042658 + MT2B LTR ERVL 56 254 -347 1 1489 193 369 69 0 chr5 118495029 118495159 -34042100 + MIRb SINE MIR 97 235 -33 1 1489 1163 66 0 0 chr5 118495332 118495469 -34041790 - B1_Mus1 SINE Alu -11 137 1 1 1489 931 215 102 24 chr5 118495485 118495690 -34041569 + URR1B DNA MER1_type 1 221 -4 1 1489 225 0 0 0 chr5 118496257 118496282 -34040977 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1489 219 309 44 0 chr5 118496914 118496982 -34040277 - ID4_ SINE ID -12 71 1 1 1489 355 274 38 11 chr5 118496982 118497121 -34040138 - B1F SINE Alu 0 149 5 1 1489 217 267 129 65 chr5 118497552 118497676 -34039583 - B4 SINE B4 -128 164 33 1 1489 2292 55 26 0 chr5 118498143 118498452 -34038807 - ORR1A2 LTR MaLR -8 319 3 1 1489 237 292 119 42 chr5 118499361 118499479 -34037780 + MIRc SINE MIR 22 148 -120 1 1489 449 274 35 9 chr5 118500082 118500196 -34037063 - PB1D10 SINE Alu 0 117 1 1 1489 252 0 0 0 chr5 118500464 118500492 -34036767 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1489 347 272 43 11 chr5 118501357 118501450 -34035809 - PB1D10 SINE Alu -13 104 9 3 1489 1210 56 0 0 chr5 118501494 118501636 -34035623 - B1_Mus2 SINE Alu -5 142 1 4 1489 429 259 0 36 chr5 118501674 118501786 -34035473 - RSINE1 SINE B4 -53 112 5 5 1489 1262 0 20 0 chr5 118501838 118501986 -34035273 + (TTCTC)n Simple_repeat Simple_repeat 5 155 0 6 1489 409 324 151 20 chr5 118502564 118502624 -34034635 - L1MB5 LINE L1 -6 6172 6115 7 1489 1632 21 27 0 chr5 118502624 118502810 -34034449 + B2_Mm1t SINE B2 2 192 -1 8 1489 423 283 147 26 chr5 118502810 118503140 -34034119 - L1MB5 LINE L1 -64 6114 5727 7 1489 198 0 0 0 chr5 118503476 118503498 -34033761 + (AGGGGG)n Simple_repeat Simple_repeat 6 27 0 9 1489 798 255 136 8 chr5 118503896 118504153 -34033106 - B4 SINE B4 -2 290 1 1 1489 1360 77 11 16 chr5 118504162 118504347 -34032912 - B2_Mm1t SINE B2 -8 185 2 1 1489 269 231 30 30 chr5 118504377 118504444 -34032815 - ID4_ SINE ID -16 67 1 1 1489 213 65 0 0 chr5 118504759 118504790 -34032469 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 1 1489 985 62 0 0 chr5 118506103 118506233 -34031026 - B1_Mus2 SINE Alu -9 138 9 1 1489 447 173 16 134 chr5 118506129 118506256 -34031003 - MT2B LTR ERVL -337 264 153 1 1489 304 243 76 87 chr5 118507519 118507704 -34029555 + AmnSINE1 SINE SINE 300 482 -93 1 1489 225 196 0 35 chr5 118508406 118508464 -34028795 - tRNA-Ala-GCY_ tRNA tRNA -3 72 17 1 1489 423 98 0 0 chr5 118508835 118508896 -34028363 + (TG)n Simple_repeat Simple_repeat 1 61 0 1 1489 262 280 108 17 chr5 118510426 118510546 -34026713 + MT2B2 LTR ERVL 125 255 -329 1 1489 332 171 28 14 chr5 118510485 118510556 -34026703 + PB1D10 SINE Alu 37 108 -9 2 1489 332 285 71 28 chr5 118512719 118512860 -34024399 - B3A SINE B2 -3 195 49 2 1489 284 291 161 57 chr5 118512917 118513003 -34024256 - B4 SINE B4 -6 286 104 2 1489 289 232 84 95 chr5 118513003 118513098 -34024161 - PB1D7 SINE Alu -26 94 1 2 1489 284 291 161 57 chr5 118513098 118513110 -34024149 - B4 SINE B4 -6 103 74 2 1489 243 0 0 0 chr5 118514039 118514066 -34023193 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1489 259 214 56 14 chr5 118517702 118517773 -34019486 + ID2 SINE ID 4 77 -6 2 1489 189 0 0 0 chr5 118517913 118517934 -34019325 + (GGA)n Simple_repeat Simple_repeat 2 22 0 2 1489 216 182 0 0 chr5 118521026 118521070 -34016189 + T-rich Low_complexity Low_complexity 1 44 0 2 1489 271 309 60 0 chr5 118521113 118521197 -34016062 + MTEb LTR MaLR 174 262 -117 2 1489 333 0 0 0 chr5 118521244 118521281 -34015978 + (CCTG)n Simple_repeat Simple_repeat 1 37 0 2 1489 416 269 0 92 chr5 118522294 118522413 -34014846 + ID_B1 SINE B4 109 216 -8 3 1489 194 235 0 19 chr5 118523604 118523656 -34013603 - L2 LINE L2 -3213 206 156 3 1489 356 286 16 78 chr5 118524197 118524326 -34012933 + RSINE1 SINE B4 45 165 0 3 1489 565 204 137 82 chr5 118524408 118524590 -34012669 - B3A SINE B2 -5 193 2 3 1489 331 292 167 14 chr5 118524823 118525045 -34012214 + L1M4 LINE L1 4874 5129 -1017 3 1489 793 174 7 22 chr5 118526393 118526528 -34010731 - B1_Mur1 SINE Alu -15 134 2 3 1489 319 185 61 12 chr5 118526542 118526624 -34010635 - B4 SINE B4 -206 86 1 3 1489 669 100 53 26 chr5 118528344 118528457 -34008802 - B1_Mur2 SINE Alu 0 149 34 3 1489 183 80 0 0 chr5 118528922 118528947 -34008312 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3 1489 830 170 37 0 chr5 118528947 118529082 -34008177 - B1_Mur2 SINE Alu -9 140 1 3 1489 186 43 0 0 chr5 118533633 118533656 -34003603 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 4 1489 581 124 10 0 chr5 118533652 118533749 -34003510 + (GGGAGA)n Simple_repeat Simple_repeat 4 101 0 4 1489 459 0 0 0 chr5 118535422 118535473 -34001786 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1489 206 297 0 71 chr5 118536488 118536586 -34000673 + G-rich Low_complexity Low_complexity 2 92 0 4 1489 200 209 22 34 chr5 118537876 118537965 -33999294 + (CTCA)n Simple_repeat Simple_repeat 1 88 0 4 1489 1677 31 5 0 chr5 118538576 118538768 -33998491 + B2_Mm1t SINE B2 1 193 0 4 1489 591 212 50 14 chr5 118540612 118540751 -33996508 - B1_Mur1 SINE Alu -5 144 1 4 1489 946 223 39 19 chr5 118540929 118541135 -33996124 + B3 SINE B2 1 210 -6 4 1489 267 31 0 0 chr5 118542145 118542177 -33995082 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 4 1489 274 190 52 0 chr5 118542347 118542405 -33994854 + B1F SINE Alu 89 149 0 4 1489 388 237 155 17 chr5 118544941 118545057 -33992202 + B3A SINE B2 1 132 -66 5 1489 600 214 17 0 chr5 118545087 118545260 -33991999 + GA-rich Low_complexity Low_complexity 3 178 0 5 1489 247 308 46 0 chr5 118545260 118545325 -33991934 - ID4 SINE ID -14 69 2 5 1489 311 305 183 17 chr5 118546910 118547090 -33990169 - L1MD LINE L1 -3684 2462 2253 5 1489 472 224 278 28 chr5 118548164 118548467 -33988792 + MTD LTR MaLR 11 405 -14 5 1489 238 262 82 0 chr5 118550591 118550652 -33986607 - B4A SINE B4 -59 233 168 5 1489 2836 213 96 88 chr5 118551360 118551761 -33985498 - RLTR21 LTR ERVK -564 1008 635 5 1489 1396 85 16 0 chr5 118551761 118551949 -33985310 - B2_Mm1t SINE B2 -2 191 1 5 1489 2836 213 96 88 chr5 118551949 118552494 -33984765 - RLTR21 LTR ERVK -938 634 54 5 1489 996 94 19 0 chr5 118552754 118552913 -33984346 + (TC)n Simple_repeat Simple_repeat 2 163 0 5 1489 1169 68 0 7 chr5 118552917 118553065 -33984194 - B1_Mm SINE Alu 0 147 1 5 1489 679 292 68 89 chr5 118553089 118553130 -33984129 + MTD LTR MaLR 22 62 -357 6 1489 799 258 35 15 chr5 118553130 118553286 -33983973 + B3 SINE B2 3 165 -51 6 1489 279 0 0 0 chr5 118553286 118553317 -33983942 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1489 799 258 35 15 chr5 118553317 118553361 -33983898 + B3 SINE B2 166 207 -9 6 1489 679 292 68 89 chr5 118553361 118553688 -33983571 + MTD LTR MaLR 63 381 -38 6 1489 421 280 119 0 chr5 118553861 118553979 -33983280 - B3 SINE B2 -53 163 32 6 1489 316 309 189 6 chr5 118554021 118554190 -33983069 - L1M2 LINE L1 -958 5185 4986 6 1489 277 315 18 18 chr5 118555463 118555573 -33981686 + B4A SINE B4 2 111 -181 6 1489 415 105 5 36 chr5 118556171 118556281 -33980978 - B1_Mm SINE Alu 0 150 48 6 1489 240 376 10 0 chr5 118556325 118556426 -33980833 - L1MC4 LINE L1 -1002 7040 6939 6 1489 399 167 51 0 chr5 118557521 118557599 -33979660 + B1_Mm SINE Alu 66 147 0 6 1489 220 292 151 0 chr5 118557668 118557774 -33979485 - RSINE1 SINE B4 -6 159 38 6 1489 897 226 34 5 chr5 118559994 118560199 -33977060 + B3 SINE B2 6 216 0 7 1489 641 205 16 0 chr5 118560658 118560785 -33976474 - B1_Mur1 SINE Alu 0 149 21 7 1489 218 32 32 0 chr5 118560808 118560839 -33976420 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 7 1489 1138 58 7 0 chr5 118560839 118560978 -33976281 - B1_Mus1 SINE Alu -8 140 1 7 1489 4958 140 80 25 chr5 118561242 118562097 -33975162 + RMER19B LTR ERVK 1 902 0 7 1489 351 0 0 0 chr5 118562391 118562430 -33974829 + (CTG)n Simple_repeat Simple_repeat 3 41 0 7 1489 256 275 72 0 chr5 118562436 118562505 -33974754 - ID4_ SINE ID -9 74 1 7 1489 1691 31 0 0 chr5 118562603 118562795 -33974464 - B2_Mm1a SINE B2 0 193 2 7 1489 279 54 0 0 chr5 118563569 118563606 -33973653 + (G)n Simple_repeat Simple_repeat 1 37 0 7 1489 597 140 52 17 chr5 118563993 118564109 -33973150 + B1_Mur2 SINE Alu 30 149 0 7 1489 337 301 26 58 chr5 118564780 118564935 -33972324 - RSINE1 SINE B4 0 165 16 8 1489 199 0 31 31 chr5 118564990 118565022 -33972237 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 8 1489 1155 52 0 0 chr5 118565027 118565162 -33972097 - B1_Mus2 SINE Alu -12 135 1 8 1489 718 180 86 0 chr5 118565170 118565298 -33971961 - B1_Mus1 SINE Alu -7 141 3 8 1489 1260 101 32 11 chr5 118568067 118568231 -33969028 + B2_Mm2 SINE B2 2 169 -26 8 1489 965 55 141 0 chr5 118568231 118568359 -33968900 - B1_Mus2 SINE Alu 0 147 2 8 1489 1260 101 32 11 chr5 118568359 118568384 -33968875 + B2_Mm2 SINE B2 170 194 -1 8 1489 561 192 167 0 chr5 118570139 118570259 -33967000 + URR1A DNA MER1_type 1 140 -86 8 1489 776 200 0 27 chr5 118572419 118572568 -33964691 + B1_Mus2 SINE Alu 2 146 -1 8 1489 348 309 65 0 chr5 118572579 118572718 -33964541 + L1MB7 LINE L1 6018 6165 -19 8 1489 652 277 25 0 chr5 118573912 118574071 -33963188 + RSINE1 SINE B4 3 165 0 8 1489 203 88 29 0 chr5 118574078 118574112 -33963147 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 9 1489 355 314 27 74 chr5 118574213 118574361 -33962898 - RSINE1 SINE B4 -21 144 4 9 1489 738 222 7 27 chr5 118575765 118575913 -33961346 + B1_Mur2 SINE Alu 5 149 0 9 1489 323 242 146 10 chr5 118577857 118577953 -33959306 + MER20 DNA MER1_type 4 112 -107 9 1489 180 0 0 0 chr5 118578770 118578790 -33958469 + (CCTG)n Simple_repeat Simple_repeat 2 21 0 9 1489 326 269 0 37 chr5 118579883 118579964 -33957295 + ID4 SINE ID 2 79 -4 9 1489 245 335 102 66 chr5 118579977 118580143 -33957116 + B4A SINE B4 2 173 -119 9 1489 593 277 25 6 chr5 118580172 118580332 -33956927 + RSINE1 SINE B4 3 165 0 9 1489 214 241 17 17 chr5 118580339 118580398 -33956861 + (CATA)n Simple_repeat Simple_repeat 4 62 0 9 1489 806 174 27 20 chr5 118580614 118580761 -33956498 + B1_Mur1 SINE Alu 2 149 0 9 1489 575 264 0 0 chr5 118581026 118581155 -33956104 + B1F SINE Alu 8 136 -13 1 1489 241 250 65 13 chr5 118581179 118581256 -33956003 + L1M4 LINE L1 490 570 -5972 1 1489 291 252 66 73 chr5 118581346 118581483 -33955776 + L1M4 LINE L1 711 846 -5696 1 1489 1257 55 0 0 chr5 118581488 118581634 -33955625 + B1_Mus2 SINE Alu 1 146 -1 1 1489 22 0 0 0 chr5 118581896 118581918 -33955341 + AT_rich Low_complexity Low_complexity 1 22 0 1 1489 400 218 73 0 chr5 118582228 118582338 -33954921 + PB1D9 SINE Alu 3 120 0 1 1489 1054 248 5 0 chr5 118582459 118582673 -33954586 + B3 SINE B2 2 216 0 1 1489 639 157 54 7 chr5 118582683 118582809 -33954450 + B1_Mur3 SINE Alu 2 126 -21 1 1489 841 65 194 0 chr5 118582981 118583105 -33954154 - B1_Mus1 SINE Alu 0 148 1 1 1489 750 183 91 30 chr5 118584048 118584245 -33953014 + B3 SINE B2 2 210 -6 1 1489 401 258 14 71 chr5 118584303 118584452 -33952807 + B4 SINE B4 88 233 -59 1 1489 498 114 0 0 chr5 118584452 118584531 -33952728 + (GGGGA)n Simple_repeat Simple_repeat 5 83 0 1 1489 219 396 73 23 chr5 118584720 118585020 -33952239 - L3 LINE CR1 -790 3699 3385 1 1489 256 331 125 8 chr5 118585577 118585705 -33951554 + MER103 DNA DNA 3 145 -21 1 1489 439 251 264 26 chr5 118586916 118587177 -33950082 + MTEa LTR MaLR 53 375 -4 1 1489 548 225 0 26 chr5 118588559 118588673 -33948586 - PB1D10 SINE Alu -1 116 6 1 1489 307 316 42 17 chr5 118588569 118588688 -33948571 - B4A SINE B4 -94 198 77 1 1489 234 301 116 40 chr5 118588792 118589017 -33948242 + L1MD2 LINE L1 5973 6214 -145 1 1489 740 232 149 0 chr5 118589150 118589331 -33947928 + B3 SINE B2 1 208 -8 1 1489 759 152 0 0 chr5 118589356 118589474 -33947785 + B1_Mus2 SINE Alu 1 118 -29 1 1489 312 161 0 0 chr5 118590426 118590488 -33946771 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1489 236 239 83 14 chr5 118591206 118591278 -33945981 - ID4_ SINE ID -3 80 4 1 1489 431 27 55 0 chr5 118591334 118591407 -33945852 + (CTCA)n Simple_repeat Simple_repeat 1 77 0 1 1489 445 314 109 5 chr5 118591887 118592089 -33945170 + RMER15 LTR ERVL 353 575 0 1 1489 278 320 79 33 chr5 118596987 118597139 -33940120 + MamRep1161 DNA TcMar 42 200 -757 1 1489 533 250 111 22 chr5 118597801 118597981 -33939278 + B3A SINE B2 2 197 -1 1 1489 323 224 15 15 chr5 118598240 118598308 -33938951 + L2a LINE L2 3338 3405 -21 1 1489 242 236 0 18 chr5 118598323 118598379 -33938880 + (TGGA)n Simple_repeat Simple_repeat 2 56 0 1 1489 188 280 38 51 chr5 118598596 118598675 -33938584 + MIR SINE MIR 30 107 -101 1 1489 398 141 0 0 chr5 118598839 118598903 -33938356 - U6 snRNA snRNA -43 64 1 1 1489 238 327 204 71 chr5 118599283 118599606 -33937653 + MLT1K LTR MaLR 203 568 -27 1 1489 657 222 188 6 chr5 118600082 118600263 -33936996 + ID_B1 SINE B4 2 215 -9 1 1489 1227 68 0 0 chr5 118600729 118600876 -33936383 + B1_Mm SINE Alu 1 147 0 1 1489 288 209 164 0 chr5 118601245 118601312 -33935947 + B1_Mus2 SINE Alu 18 95 -52 1 1489 1404 174 144 59 chr5 118601318 118601672 -33935587 + ORR1C2 LTR MaLR 1 384 0 1 1489 1453 65 43 0 chr5 118601730 118601915 -33935344 + B2_Mm2 SINE B2 1 193 -2 1 1489 714 278 96 35 chr5 118602447 118602708 -33934551 + B4 SINE B4 2 278 -14 1 1489 216 0 0 0 chr5 118602734 118602758 -33934501 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1489 195 42 0 0 chr5 118602758 118602781 -33934478 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1489 566 144 0 19 chr5 118602781 118602887 -33934372 + GA-rich Low_complexity Low_complexity 3 106 0 1 1489 269 217 50 0 chr5 118602937 118602997 -33934262 + B3A SINE B2 50 112 -86 1 1489 1798 188 138 39 chr5 118603290 118603673 -33933586 - MTC LTR MaLR 0 421 1 1 1489 198 0 0 0 chr5 118603805 118603827 -33933432 + (G)n Simple_repeat Simple_repeat 1 22 0 1 1489 538 279 90 16 chr5 118604129 118604312 -33932947 - B3A SINE B2 -8 187 2 1 1489 264 59 0 0 chr5 118605657 118605691 -33931568 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1489 538 227 0 18 chr5 118605691 118605803 -33931456 - RSINE1 SINE B4 -41 124 15 1 1489 797 20 0 0 chr5 118605922 118606022 -33931237 - B1_Mus1 SINE Alu -9 139 40 1 1489 293 192 73 49 chr5 118605956 118606038 -33931221 - RLTR25B LTR ERVK -519 509 426 1 1489 1240 34 7 0 chr5 118606142 118606288 -33930971 + B1_Mus2 SINE Alu 1 147 0 1 1489 316 0 45 0 chr5 118606290 118606334 -33930925 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1 1489 896 259 81 142 chr5 118606536 118606978 -33930281 + RMER5 LTR ERV1 40 454 -80 1 1489 306 0 0 0 chr5 118607264 118607298 -33929961 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1489 268 287 5 60 chr5 118607333 118607518 -33929741 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 1 1489 291 167 49 16 chr5 118607747 118607808 -33929451 + RMER5 LTR ERV1 472 534 0 1 1489 707 67 1 3 chr5 118608188 118608293 -33928966 - B2_Mm2 SINE B2 -90 103 1 1 1489 1110 57 35 0 chr5 118608673 118608814 -33928445 + B1_Mus1 SINE Alu 3 148 0 1 1489 789 77 205 0 chr5 118608831 118608948 -33928311 + B1_Mm SINE Alu 2 142 -5 1 1489 786 188 31 88 chr5 118609031 118609224 -33928035 - URR1A DNA MER1_type 0 226 45 1 1489 417 162 68 0 chr5 118609256 118609330 -33927929 + B3 SINE B2 1 79 -137 1 1489 258 186 16 33 chr5 118609637 118609698 -33927561 - PB1D9 SINE Alu -2 118 59 1 1489 262 198 11 55 chr5 118609709 118609800 -33927459 + (CAAA)n Simple_repeat Simple_repeat 2 88 0 1 1489 698 184 262 6 chr5 118609809 118609973 -33927286 + B3 SINE B2 5 210 -6 1 1489 470 310 5 60 chr5 118610004 118610189 -33927070 - Lx7 LINE L1 -396 7300 7126 1 1489 294 125 0 0 chr5 118610247 118610295 -33926964 + (GGGA)n Simple_repeat Simple_repeat 1 48 0 1 1489 418 230 9 57 chr5 118610362 118610468 -33926791 - PB1D7 SINE Alu -6 114 14 1 1489 216 235 39 0 chr5 118611248 118611299 -33925960 + GA-rich Low_complexity Low_complexity 4 56 0 1 1489 204 40 0 0 chr5 118611305 118611330 -33925929 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 1 1489 855 197 0 0 chr5 118611342 118611520 -33925739 + GA-rich Low_complexity Low_complexity 3 180 0 1 1489 367 340 152 8 chr5 118612170 118612573 -33924686 + MLT2B5 LTR ERVL 77 526 -7 1 1489 491 31 15 0 chr5 118612702 118612767 -33924492 + (TCCA)n Simple_repeat Simple_repeat 1 66 0 1 1489 279 355 0 45 chr5 118612931 118612954 -33924305 - B3A SINE B2 -6 192 171 1 1489 339 89 0 0 chr5 118612954 118613010 -33924249 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1489 279 355 0 45 chr5 118613010 118613098 -33924161 - B3A SINE B2 -28 170 86 1 1489 1227 82 53 42 chr5 118613120 118613310 -33923949 + B2_Mm2 SINE B2 3 194 -1 1 1489 217 167 0 23 chr5 118613320 118613363 -33923896 + B1_Mus1 SINE Alu 7 48 -100 1 1489 480 18 0 0 chr5 118613363 118613420 -33923839 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1 1489 388 330 80 0 chr5 118613545 118613721 -33923538 - MER58A DNA MER1_type -16 208 19 1 1489 180 111 0 0 chr5 118614567 118614594 -33922665 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1489 277 322 84 13 chr5 118614621 118614775 -33922484 - MIRb SINE MIR -62 206 42 1 1489 294 304 0 0 chr5 118615096 118615175 -33922084 + (CATA)n Simple_repeat Simple_repeat 4 82 0 1 1489 906 191 90 5 chr5 118615267 118615456 -33921803 - B3 SINE B2 -11 205 1 1 1489 465 34 0 0 chr5 118615503 118615562 -33921697 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 1 1489 273 268 0 0 chr5 118615570 118615641 -33921618 + (CAGT)n Simple_repeat Simple_repeat 3 73 0 1 1489 198 0 0 0 chr5 118615802 118615824 -33921435 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1489 695 131 45 23 chr5 118615824 118615949 -33921310 - B1_Mus1 SINE Alu -7 141 12 1 1489 891 121 0 0 chr5 118616000 118616140 -33921119 + (TCCC)n Simple_repeat Simple_repeat 3 142 0 1 1489 201 74 0 0 chr5 118616392 118616419 -33920840 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 1 1489 458 241 86 14 chr5 118616484 118616623 -33920636 - B1F SINE Alu 0 149 1 1 1489 1484 51 17 0 chr5 118616756 118616934 -33920325 + B2_Mm2 SINE B2 2 182 -13 1 1489 231 36 0 0 chr5 118616934 118616962 -33920297 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1489 754 204 0 0 chr5 118616992 118617124 -33920135 + RSINE1 SINE B4 16 147 -18 1 1489 387 0 0 0 chr5 118617125 118617168 -33920091 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1489 360 0 0 0 chr5 118617168 118617207 -33920052 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1489 288 0 0 0 chr5 118617387 118617419 -33919840 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1489 247 333 19 10 chr5 118617738 118617841 -33919418 - MIRb SINE MIR -26 242 139 1 1489 193 378 20 10 chr5 118617885 118617984 -33919275 + MIR SINE MIR 45 144 -118 1 1489 1225 68 0 0 chr5 118618367 118618515 -33918744 - B1_Mus1 SINE Alu 0 148 1 1 1489 584 27 14 0 chr5 118618534 118618608 -33918651 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 1 1489 509 290 0 16 chr5 118618629 118618755 -33918504 - RSINE1 SINE B4 -31 134 11 1 1489 261 282 14 0 chr5 118618761 118618832 -33918427 - B1_Mur1 SINE Alu 0 149 78 1 1489 22 0 0 0 chr5 118619812 118619834 -33917425 + GC_rich Low_complexity Low_complexity 1 22 0 1 1490 750 157 11 22 chr5 118620287 118620469 -33916790 + CT-rich Low_complexity Low_complexity 1 180 0 1 1490 382 234 38 21 chr5 118620483 118620775 -33916484 + CT-rich Low_complexity Low_complexity 1 297 0 1 1490 220 118 73 0 chr5 118620899 118620967 -33916292 + CT-rich Low_complexity Low_complexity 1 73 0 1 1490 189 220 20 20 chr5 118621502 118621553 -33915706 - MIRb SINE MIR -23 253 203 2 1490 192 70 0 65 chr5 118622821 118622867 -33914392 + (TGGGGG)n Simple_repeat Simple_repeat 2 44 0 2 1490 306 73 0 0 chr5 118623212 118623253 -33914006 + (TAA)n Simple_repeat Simple_repeat 2 42 0 2 1490 293 357 75 93 chr5 118623583 118623861 -33913398 + B4A SINE B4 11 283 -9 2 1490 386 222 0 0 chr5 118623915 118623987 -33913272 + ID4 SINE ID 2 73 -10 2 1490 186 43 0 0 chr5 118624384 118624407 -33912852 + (AGGGGG)n Simple_repeat Simple_repeat 2 24 0 2 1490 671 220 118 12 chr5 118625259 118625429 -33911830 - B3 SINE B2 -3 213 26 2 1490 330 24 0 0 chr5 118625428 118625469 -33911790 + B1_Mus2 SINE Alu 95 135 -12 2 1490 492 259 27 0 chr5 118625468 118625580 -33911679 - ID_B1 SINE B4 -109 115 1 2 1490 191 114 29 0 chr5 118625833 118625868 -33911391 + (TTTTC)n Simple_repeat Simple_repeat 5 40 0 2 1490 1014 67 96 0 chr5 118625869 118626004 -33911255 - B1_Mus1 SINE Alu 0 148 1 2 1490 898 110 0 22 chr5 118626162 118626301 -33910958 + B1_Mur2 SINE Alu 14 149 0 2 1490 280 202 10 21 chr5 118626333 118626429 -33910830 + (TATG)n Simple_repeat Simple_repeat 2 96 0 2 1490 841 221 0 24 chr5 118626434 118626601 -33910658 - RSINE1 SINE B4 0 165 3 2 1490 254 224 0 108 chr5 118627348 118627413 -33909846 - MIR3 SINE MIR -94 168 111 2 1490 282 330 10 0 chr5 118628156 118628259 -33909000 + PB1 SINE Alu 2 105 -22 2 1490 953 56 56 8 chr5 118628737 118628863 -33908396 + B1_Mus1 SINE Alu 3 134 -14 2 1490 291 28 0 0 chr5 118629024 118629060 -33908199 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1490 449 276 16 19 chr5 118629072 118629201 -33908058 - B4A SINE B4 -10 282 142 2 1490 763 55 0 9 chr5 118629210 118629319 -33907940 - B2_Mm2 SINE B2 -6 189 82 2 1490 333 283 65 26 chr5 118630235 118630439 -33906820 - ORR1E LTR MaLR -290 69 1 2 1490 404 212 59 29 chr5 118631377 118631479 -33905780 + PB1D10 SINE Alu 2 106 -14 2 1490 761 282 42 42 chr5 118631479 118631816 -33905443 - L1MB7 LINE L1 -163 6021 5685 2 1490 652 327 230 5 chr5 118631840 118632270 -33904989 - Lx8 LINE L1 -7 7466 6940 2 1490 355 312 0 0 chr5 118632282 118632362 -33904897 + Lx8 LINE L1 6768 6847 -626 2 1490 1447 79 11 0 chr5 118632398 118632587 -33904672 - B2_Mm1t SINE B2 -1 192 2 2 1490 1143 179 77 0 chr5 118633020 118633215 -33904044 + B3 SINE B2 3 212 -4 2 1490 933 116 0 0 chr5 118633231 118633377 -33903882 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 2 1490 1347 72 0 0 chr5 118633377 118633557 -33903702 + (CCCA)n Simple_repeat Simple_repeat 1 180 0 2 1490 747 87 0 0 chr5 118633557 118633661 -33903598 + (TCCA)n Simple_repeat Simple_repeat 1 104 0 2 1490 285 216 21 93 chr5 118633813 118633910 -33903349 - ID_B1 SINE B4 -13 211 122 2 1490 225 355 37 18 chr5 118633941 118634050 -33903209 - ID_B1 SINE B4 -77 147 37 2 1490 820 194 0 0 chr5 118634054 118634188 -33903071 - B1_Mur3 SINE Alu -15 134 1 2 1490 315 49 0 0 chr5 118634239 118634280 -33902979 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1490 24 0 0 0 chr5 118635210 118635234 -33902025 + AT_rich Low_complexity Low_complexity 1 24 0 2 1490 210 91 0 0 chr5 118635636 118635669 -33901590 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 1490 240 277 24 12 chr5 118635894 118635978 -33901281 - PB1D7 SINE Alu -7 113 29 2 1490 234 0 0 0 chr5 118636933 118636959 -33900300 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1490 240 111 0 0 chr5 118637107 118637143 -33900116 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1490 492 48 0 0 chr5 118637313 118637376 -33899883 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1490 317 198 291 8 chr5 118638031 118638148 -33899111 - ID_B1 SINE B4 -3 221 72 2 1490 184 278 98 22 chr5 118638368 118638460 -33898799 - L3 LINE CR1 -3378 1111 1013 2 1490 213 321 0 35 chr5 118638794 118638881 -33898378 - MIR SINE MIR -90 172 89 2 1490 440 221 127 22 chr5 118639655 118639789 -33897470 - B1F2 SINE Alu 0 149 2 2 1490 229 232 183 48 chr5 118639942 118640046 -33897213 - B1F SINE Alu -2 118 1 2 1490 230 296 0 0 chr5 118640069 118640140 -33897119 - ID4_ SINE ID -10 73 3 2 1490 222 366 26 46 chr5 118640463 118640615 -33896644 - RSINE1 SINE B4 -13 152 4 2 1490 271 172 260 31 chr5 118640989 118641085 -33896174 - B3A SINE B2 -80 118 1 2 1490 1023 241 9 5 chr5 118641478 118641699 -33895560 - ID_B1 SINE B4 -1 223 2 2 1490 324 70 0 0 chr5 118644125 118644168 -33893091 + (TATG)n Simple_repeat Simple_repeat 4 46 0 2 1490 217 225 0 0 chr5 118644169 118644209 -33893050 - B3 SINE B2 -96 120 81 2 1490 654 314 142 58 chr5 118644873 118645336 -33891923 + MLT1F2 LTR MaLR 59 560 0 2 1490 234 128 0 0 chr5 118645474 118645513 -33891746 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1490 180 0 0 0 chr5 118645606 118645626 -33891633 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1490 987 66 81 0 chr5 118645626 118645762 -33891497 - B1_Mm SINE Alu 0 147 1 2 1490 187 315 171 27 chr5 118646171 118646282 -33890977 + MIRm SINE MIR 11 137 -139 2 1490 1353 29 115 6 chr5 118646495 118646669 -33890590 + B2_Mm2 SINE B2 2 194 -1 2 1490 339 25 0 0 chr5 118646918 118646958 -33890301 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 2 1490 203 133 0 0 chr5 118646960 118646990 -33890269 + (CCCA)n Simple_repeat Simple_repeat 4 33 0 2 1490 183 252 112 75 chr5 118647168 118647275 -33889984 - L2c LINE L2 -154 3233 3123 2 1490 372 297 29 8 chr5 118647585 118647751 -33889508 + L1MC LINE L1 5348 5518 -815 2 1490 350 211 41 0 chr5 118648425 118648548 -33888711 + (TATG)n Simple_repeat Simple_repeat 3 130 0 2 1490 364 286 25 31 chr5 118648548 118648707 -33888552 + RLTR21 LTR ERVK 1097 1254 -318 2 1490 574 338 7 0 chr5 118648697 118648851 -33888408 - RSINE1 SINE B4 -8 157 3 2 1490 379 353 56 15 chr5 118648886 118649156 -33888103 - L1MD3 LINE L1 0 7995 7715 2 1490 503 214 25 59 chr5 118649193 118649312 -33887947 - PB1D10 SINE Alu -1 116 2 2 1490 228 225 96 27 chr5 118649344 118649417 -33887842 + ID4_ SINE ID 1 78 -5 2 1490 237 197 0 0 chr5 118649433 118649499 -33887760 + GA-rich Low_complexity Low_complexity 2 67 0 2 1490 496 162 50 20 chr5 118649502 118649603 -33887656 + ID_B1 SINE B4 121 224 0 2 1490 556 191 17 17 chr5 118650358 118650475 -33886784 + PB1D10 SINE Alu 1 117 0 2 1490 636 219 271 3 chr5 118650579 118650881 -33886378 + RMER10B LTR ERVL 6 387 -11 2 1490 225 304 75 47 chr5 118650974 118651081 -33886178 - MIRb SINE MIR -137 131 15 2 1490 231 281 40 81 chr5 118651586 118651710 -33885549 - MER117 DNA MER1_type -64 133 15 2 1490 646 229 49 21 chr5 118651845 118651988 -33885271 + RSINE1 SINE B4 3 149 -16 2 1490 358 238 9 47 chr5 118652448 118652554 -33884705 + PB1D10 SINE Alu 1 102 -15 2 1490 329 302 0 2 chr5 118652570 118652664 -33884595 + ID4_ SINE ID 8 100 -52 2 1490 345 338 52 15 chr5 118653582 118653849 -33883410 + L1ME2 LINE L1 5632 5908 -256 2 1490 868 278 98 4 chr5 118653849 118654113 -33883146 + B4A SINE B4 2 290 -2 2 1490 282 160 0 0 chr5 118654133 118654183 -33883076 + CT-rich Low_complexity Low_complexity 2 51 0 2 1490 285 29 0 0 chr5 118654183 118654217 -33883042 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1490 399 21 0 0 chr5 118654512 118654560 -33882699 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1490 324 64 0 0 chr5 118654560 118654606 -33882653 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1490 315 330 152 5 chr5 118654861 118655065 -33882194 + L1MD3 LINE L1 7442 7675 -320 2 1490 641 260 6 25 chr5 118655157 118655315 -33881944 - RSINE1 SINE B4 -7 158 4 2 1490 357 251 5 79 chr5 118655464 118655654 -33881605 + (TG)n Simple_repeat Simple_repeat 1 176 0 2 1490 189 0 0 0 chr5 118656300 118656321 -33880938 + (TCCA)n Simple_repeat Simple_repeat 3 23 0 2 1490 200 206 0 42 chr5 118656392 118656463 -33880796 + (TATG)n Simple_repeat Simple_repeat 3 70 0 2 1490 523 225 53 30 chr5 118656472 118656605 -33880654 - B4A SINE B4 -1 291 156 2 1490 191 36 36 0 chr5 118656691 118656719 -33880540 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 2 1490 239 288 89 23 chr5 118657617 118657757 -33879502 + MIR3 SINE MIR 12 166 -102 2 1490 315 211 0 0 chr5 118657845 118657935 -33879324 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 1490 430 187 140 0 chr5 118657950 118658057 -33879202 - MER63B DNA AcHobo 0 436 315 2 1490 538 184 28 12 chr5 118658712 118658959 -33878300 + GA-rich Low_complexity Low_complexity 1 251 0 2 1490 523 303 155 22 chr5 118659046 118659272 -33877987 - MER2 DNA MER2_type -4 341 86 2 1490 232 309 36 0 chr5 118659342 118659426 -33877833 + MLT1A LTR MaLR 67 153 -212 2 1490 911 182 0 0 chr5 118659429 118659577 -33877682 + B1_Mur4 SINE Alu 2 149 -1 2 1490 535 165 7 62 chr5 118659617 118659744 -33877515 + B3A SINE B2 3 125 -70 2 1490 308 191 20 152 chr5 118659786 118659885 -33877374 + PB1D7 SINE Alu 14 99 -21 2 1490 239 312 0 3 chr5 118659883 118659966 -33877293 + MLT1A LTR MaLR 213 305 -69 2 1490 221 338 14 0 chr5 118660066 118660140 -33877119 + MIR SINE MIR 43 117 -145 2 1490 1235 48 7 0 chr5 118660676 118660822 -33876437 + B1_Mus2 SINE Alu 1 147 0 2 1490 233 70 0 44 chr5 118660826 118660871 -33876388 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1490 192 40 0 0 chr5 118660885 118660910 -33876349 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3 1490 995 214 21 42 chr5 118660912 118660933 -33876326 - 7SK RNA RNA -89 242 222 3 1490 866 214 156 0 chr5 118660933 118661125 -33876134 + URR1A DNA MER1_type 5 226 0 3 1490 995 214 21 42 chr5 118661125 118661342 -33875917 - 7SK RNA RNA -110 221 10 3 1490 180 111 0 0 chr5 118661783 118661810 -33875449 + (TTC)n Simple_repeat Simple_repeat 2 28 0 3 1490 1273 40 0 0 chr5 118661812 118661960 -33875299 - B1_Mus1 SINE Alu 0 148 1 3 1490 317 322 61 66 chr5 118662179 118662375 -33874884 - MLT1K LTR MaLR -21 574 380 3 1490 2375 159 121 30 chr5 118662433 118662964 -33874295 + RMER4B LTR ERVK 1 579 -6 3 1490 180 271 0 0 chr5 118663006 118663054 -33874205 - MIR SINE MIR -141 121 74 3 1490 1177 48 7 20 chr5 118663120 118663269 -33873990 - B1_Mus2 SINE Alu 0 147 1 3 1490 241 208 60 72 chr5 118663320 118663403 -33873856 + RLTR28B LTR ERVL 148 229 -252 3 1490 250 269 104 8 chr5 118663957 118663986 -33873273 - B4A SINE B4 -91 201 85 3 1490 333 237 26 0 chr5 118663986 118664062 -33873197 - PB1D10 SINE Alu -36 81 4 3 1490 235 300 0 43 chr5 118664391 118664485 -33872774 + GA-rich Low_complexity Low_complexity 2 91 0 3 1490 1111 189 5 61 chr5 118664912 118665126 -33872133 - B3 SINE B2 -10 206 5 3 1490 1097 89 7 7 chr5 118665541 118665688 -33871571 - B1_Mm SINE Alu 0 147 1 3 1490 1221 55 0 7 chr5 118665690 118665838 -33871421 - B1_Mus1 SINE Alu 0 148 2 3 1490 483 234 25 110 chr5 118665853 118665864 -33871395 - B1_Mur1 SINE Alu 0 149 139 3 1490 405 0 0 0 chr5 118665864 118665909 -33871350 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 3 1490 483 234 25 110 chr5 118665909 118666060 -33871199 - B1_Mur1 SINE Alu -11 138 1 3 1490 408 196 63 32 chr5 118666521 118666616 -33870643 + B1F1 SINE Alu 14 111 -38 3 1490 282 283 57 32 chr5 118666528 118666652 -33870607 - YREP_Mm Unknown Unknown -1516 296 170 3 1490 357 43 0 0 chr5 118667815 118667862 -33869397 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1490 203 204 41 0 chr5 118668188 118668237 -33869022 + (CATG)n Simple_repeat Simple_repeat 1 51 0 3 1490 291 317 99 58 chr5 118668253 118668409 -33868850 + MIR SINE MIR 17 184 -78 3 1490 1777 169 169 0 chr5 118668409 118668728 -33868531 + ORR1C1 LTR MaLR 2 374 -4 3 1490 291 317 99 58 chr5 118668728 118668742 -33868517 + MIR SINE MIR 185 194 -68 3 1490 202 310 128 27 chr5 118668847 118668996 -33868263 + MIRm SINE MIR 27 190 -86 3 1490 741 261 0 6 chr5 118669212 118669374 -33867885 + RSINE1 SINE B4 5 165 0 3 1490 256 335 81 38 chr5 118669374 118669398 -33867861 + B3 SINE B2 4 197 -19 3 1490 491 187 12 4 chr5 118669597 118669703 -33867556 - PB1D7 SINE Alu -2 118 11 3 1490 765 283 75 11 chr5 118669741 118670009 -33867250 + B4 SINE B4 1 285 -7 3 1490 396 291 94 68 chr5 118670290 118670596 -33866663 + MLT2C1 LTR ERVL 154 562 -1 3 1490 290 179 72 29 chr5 118671193 118671262 -33865997 + ORR1E LTR MaLR 38 109 -250 3 1490 673 220 53 0 chr5 118671509 118671659 -33865600 + RSINE1 SINE B4 3 160 -5 3 1490 558 256 95 0 chr5 118672268 118672436 -33864823 - MTEa LTR MaLR 0 379 196 3 1490 372 252 100 27 chr5 118672778 118672888 -33864371 + PB1D7 SINE Alu 3 120 0 3 1490 318 299 47 0 chr5 118674217 118674324 -33862935 - PB1D10 SINE Alu 0 117 6 3 1490 728 276 42 35 chr5 118674377 118674636 -33862623 + L1MB5 LINE L1 5905 6165 -9 3 1490 558 0 0 0 chr5 118675149 118675211 -33862048 + (TTCC)n Simple_repeat Simple_repeat 2 63 0 3 1490 247 270 17 11 chr5 118675232 118675408 -33861851 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 3 1490 285 29 0 0 chr5 118675500 118675534 -33861725 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1490 321 68 0 0 chr5 118676091 118676135 -33861124 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1490 1192 68 0 7 chr5 118676316 118676463 -33860796 - B1_Mus2 SINE Alu 0 147 2 3 1490 238 312 31 31 chr5 118676682 118676778 -33860481 + MIRc SINE MIR 62 157 -111 3 1490 323 302 62 22 chr5 118677921 118678095 -33859164 - MIRb SINE MIR -102 166 1 3 1490 290 190 17 0 chr5 118678502 118678560 -33858699 - MER117 DNA MER1_type -39 158 100 3 1490 356 337 19 23 chr5 118679039 118679231 -33858028 + MIR3 SINE MIR 19 204 -4 3 1490 638 250 16 88 chr5 118679259 118679452 -33857807 - B4 SINE B4 -2 290 112 3 1490 232 242 90 15 chr5 118679869 118679936 -33857323 - MIR SINE MIR -84 178 107 3 1490 271 265 132 0 chr5 118680158 118680241 -33857018 - Charlie10 DNA MER1_type -2718 104 11 3 1490 328 261 0 52 chr5 118680697 118680794 -33856465 - PB1D10 SINE Alu -11 106 15 3 1490 284 321 0 12 chr5 118681749 118681834 -33855425 - PB1D10 SINE Alu -6 111 28 3 1490 232 238 114 79 chr5 118681825 118681858 -33855401 + Charlie5 DNA MER1_type 2472 2499 -125 3 1490 520 319 196 3 chr5 118681858 118682144 -33855115 - MER2 DNA MER2_type -1 344 4 3 1490 232 238 114 79 chr5 118682144 118682224 -33855035 + Charlie5 DNA MER1_type 2500 2589 -35 3 1490 411 38 0 0 chr5 118682259 118682312 -33854947 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1490 2567 143 52 47 chr5 118682837 118683301 -33853958 - RMER4A LTR ERVK 0 466 1 3 1490 262 228 63 0 chr5 118683638 118683717 -33853542 - AluG_3 SINE Alu -91 220 137 3 1490 315 163 50 140 chr5 118683952 118684052 -33853207 - RSINE1 SINE B4 0 165 75 3 1490 444 262 48 23 chr5 118684439 118684598 -33852661 + MIR SINE MIR 6 169 -93 3 1490 435 149 0 0 chr5 118684974 118685041 -33852218 + B1_Mus1 SINE Alu 1 67 -81 3 1490 479 230 116 54 chr5 118685056 118685203 -33852056 + RSINE1 SINE B4 8 163 -2 3 1490 210 37 0 0 chr5 118685330 118685357 -33851902 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3 1490 523 271 28 0 chr5 118685393 118685537 -33851722 + B1F1 SINE Alu 2 149 0 3 1490 273 57 0 0 chr5 118685751 118685786 -33851473 + (TTA)n Simple_repeat Simple_repeat 2 36 0 3 1490 398 269 57 43 chr5 118685816 118685956 -33851303 - RSINE1 SINE B4 -23 142 1 3 1490 606 272 13 0 chr5 118686109 118686267 -33850992 - RSINE1 SINE B4 0 165 6 3 1490 432 299 41 20 chr5 118686371 118686518 -33850741 - MER2B DNA MER2_type 0 336 187 3 1490 389 272 77 52 chr5 118686534 118686689 -33850570 - B4A SINE B4 -127 165 7 3 1490 356 254 93 34 chr5 118686908 118687026 -33850233 - MIRb SINE MIR -112 156 32 3 1490 210 232 89 0 chr5 118688065 118688121 -33849138 + PB1D10 SINE Alu 21 81 -36 3 1490 290 310 75 25 chr5 118688180 118688339 -33848920 - MIR SINE MIR -67 195 29 3 1490 722 255 129 10 chr5 118688344 118688538 -33848721 - ID_B1 SINE B4 0 224 8 3 1490 191 163 61 0 chr5 118688737 118688793 -33848466 - MIRc SINE MIR -89 173 118 3 1490 388 299 75 0 chr5 118689344 118689451 -33847808 + RSINE1 SINE B4 2 116 -49 3 1490 247 274 255 0 chr5 118690244 118690346 -33846913 + RSINE1 SINE B4 23 150 -15 3 1490 2317 100 49 51 chr5 118690414 118690825 -33846434 + RMER17C LTR ERVK 1 410 0 3 1490 32 91 0 0 chr5 118690993 118691081 -33846178 + AT_rich Low_complexity Low_complexity 1 88 0 3 1490 254 311 5 22 chr5 118691081 118691178 -33846081 + MIRb SINE MIR 1 100 -168 3 1490 302 231 45 55 chr5 118691738 118691848 -33845411 + RMER15 LTR ERVL 313 421 -154 3 1490 296 214 106 12 chr5 118691865 118691950 -33845309 + MLT1A0 LTR MaLR 189 281 -84 3 1490 247 330 21 21 chr5 118692238 118692334 -33844925 + MLT1A0 LTR MaLR 292 387 -21 3 1490 210 71 0 0 chr5 118692970 118692998 -33844261 + (TCC)n Simple_repeat Simple_repeat 2 29 0 3 1490 1084 244 41 11 chr5 118693227 118693496 -33843763 + B4A SINE B4 2 278 -14 3 1490 295 341 0 0 chr5 118693525 118693610 -33843649 + (CA)n Simple_repeat Simple_repeat 1 85 0 3 1490 279 282 37 24 chr5 118693751 118693898 -33843361 + L2c LINE L2 2977 3125 -301 3 1490 698 210 10 206 chr5 118694111 118694310 -33842949 + B3A SINE B2 36 198 0 3 1490 301 317 8 38 chr5 118695528 118695802 -33841457 + CT-rich Low_complexity Low_complexity 1 265 0 3 1490 32 0 0 0 chr5 118696263 118696295 -33840964 + AT_rich Low_complexity Low_complexity 1 32 0 3 1490 2062 79 10 0 chr5 118696833 118697123 -33840136 + ORR1A2 LTR MaLR 35 327 0 3 1490 198 0 0 0 chr5 118697673 118697695 -33839564 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3 1490 414 0 0 0 chr5 118697765 118697811 -33839448 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1490 517 220 112 15 chr5 118697816 118697950 -33839309 - B1_Mur4 SINE Alu -3 147 1 3 1490 195 42 0 0 chr5 118697957 118697981 -33839278 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1490 227 31 0 30 chr5 118698036 118698069 -33839190 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 3 1490 352 230 198 26 chr5 118699540 118699656 -33837603 + B1_Mur2 SINE Alu 1 136 -13 3 1490 328 334 245 34 chr5 118699844 118700268 -33836991 + Charlie1a DNA MER1_type 40 545 -910 3 1490 1402 73 21 5 chr5 118700268 118700460 -33836799 + B2_Mm2 SINE B2 1 195 0 3 1490 328 334 245 34 chr5 118700460 118700655 -33836604 + Charlie1a DNA MER1_type 546 789 -666 3 1490 523 234 33 46 chr5 118700930 118701082 -33836177 - RSINE1 SINE B4 0 165 16 3 1490 225 94 0 0 chr5 118701369 118701401 -33835858 + (C)n Simple_repeat Simple_repeat 1 32 0 3 1490 763 147 0 119 chr5 118701822 118701999 -33835260 - ORR1D1 LTR MaLR -218 156 1 3 1490 679 201 169 17 chr5 118702306 118702478 -33834781 + B3A SINE B2 1 198 0 3 1490 1474 69 0 11 chr5 118702509 118702700 -33834559 + B2_Mm2 SINE B2 1 189 -6 3 1490 685 206 7 41 chr5 118703072 118703219 -33834040 - B1_Mur3 SINE Alu -7 142 1 3 1490 214 73 23 47 chr5 118704174 118704217 -33833042 + (TTTTTG)n Simple_repeat Simple_repeat 2 43 0 4 1490 310 222 92 92 chr5 118704471 118704580 -33832679 + PB1D7 SINE Alu 4 112 -8 4 1490 1471 57 0 68 chr5 118704592 118704799 -33832460 + B2_Mm1t SINE B2 1 193 0 4 1490 489 242 0 0 chr5 118704824 118704923 -33832336 + PB1D7 SINE Alu 1 99 -21 4 1490 345 136 17 17 chr5 118706089 118706149 -33831110 - HAL1-3A_ME LINE L1 -824 2034 1975 4 1490 791 150 0 22 chr5 118706153 118706431 -33830828 + (TG)n Simple_repeat Simple_repeat 1 271 0 4 1490 237 268 0 18 chr5 118706432 118706489 -33830770 - RSINE1 SINE B4 0 165 110 4 1490 726 163 39 0 chr5 118706859 118706988 -33830271 - B1_Mur3 SINE Alu -15 134 1 4 1490 279 54 0 0 chr5 118707036 118707073 -33830186 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1490 457 240 263 13 chr5 118707086 118707242 -33830017 + B3A SINE B2 3 197 -1 4 1490 231 88 0 0 chr5 118707665 118707699 -33829560 + (CAG)n Simple_repeat Simple_repeat 3 36 0 4 1490 25 0 0 0 chr5 118708135 118708160 -33829099 + GC_rich Low_complexity Low_complexity 1 25 0 4 1490 382 250 128 9 chr5 118709880 118709989 -33827270 - RSINE1 SINE B4 -41 124 3 4 1490 343 295 82 15 chr5 118710731 118710865 -33826394 - RSINE1 SINE B4 -20 145 3 4 1490 240 325 13 0 chr5 118712428 118712505 -33824754 - ID4 SINE ID -3 80 3 4 1490 414 0 0 0 chr5 118713164 118713210 -33824049 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1490 361 181 31 21 chr5 118713639 118713735 -33823524 - RMER10A LTR ERVL -25 417 321 4 1490 381 93 0 0 chr5 118714156 118714210 -33823049 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1490 388 292 30 89 chr5 118714600 118714769 -33822490 - MER20 DNA MER1_type -60 159 1 4 1490 351 0 0 0 chr5 118714962 118715001 -33822258 + (TA)n Simple_repeat Simple_repeat 2 40 0 4 1490 468 0 0 0 chr5 118715286 118715338 -33821921 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1490 1602 219 144 70 chr5 118716887 118717569 -33819690 + RMER1A Other Other 15 517 -549 4 1490 1185 54 0 26 chr5 118717569 118717720 -33819539 - B1_Mus1 SINE Alu -1 147 1 4 1490 2502 190 49 73 chr5 118717720 118718412 -33818847 + RMER1B Other Other 194 1066 0 4 1490 951 194 51 5 chr5 118718419 118718616 -33818643 + B3 SINE B2 5 210 -6 4 1490 607 260 103 11 chr5 118719999 118720174 -33817085 - B3A SINE B2 -7 191 1 4 1490 252 256 174 22 chr5 118720270 118720362 -33816897 + MLT1B LTR MaLR 1 106 -284 4 1490 623 250 74 7 chr5 118720366 118720515 -33816744 + RSINE1 SINE B4 3 161 -4 4 1490 486 49 0 0 chr5 118720546 118720607 -33816652 + (GAA)n Simple_repeat Simple_repeat 1 61 0 4 1490 231 167 0 0 chr5 118720654 118720696 -33816563 + GA-rich Low_complexity Low_complexity 6 47 0 4 1490 317 274 31 10 chr5 118721257 118721353 -33815906 - MER58A DNA MER1_type -126 98 1 4 1490 345 171 11 22 chr5 118722676 118722766 -33814493 + CT-rich Low_complexity Low_complexity 2 90 0 4 1490 530 306 0 27 chr5 118724102 118724250 -33813009 + ID_B1 SINE B4 81 224 0 4 1490 24 0 0 0 chr5 118724915 118724939 -33812320 + AT_rich Low_complexity Low_complexity 1 24 0 4 1490 339 297 64 16 chr5 118725536 118725724 -33811535 - L1MB2 LINE L1 -158 6013 5817 4 1490 509 228 151 30 chr5 118725728 118725927 -33811332 - ID_B1 SINE B4 0 224 2 4 1490 387 0 0 0 chr5 118726344 118726387 -33810872 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1490 190 102 0 210 chr5 118727608 118727670 -33809589 - MIR SINE MIR -62 146 97 4 1490 238 125 0 51 chr5 118727759 118727818 -33809441 + GA-rich Low_complexity Low_complexity 2 57 0 4 1490 637 220 7 28 chr5 118728629 118728774 -33808485 + RSINE1 SINE B4 1 142 -23 4 1490 398 328 0 63 chr5 118729505 118729648 -33807611 + ID_B1 SINE B4 91 224 0 4 1490 388 237 33 50 chr5 118729666 118729786 -33807473 + PB1D7 SINE Alu 2 119 -1 4 1490 2833 137 73 6 chr5 118730863 118731355 -33805904 + RLTR11A LTR ERVK 1 525 -3 4 1490 678 44 0 0 chr5 118731355 118731445 -33805814 + (CA)n Simple_repeat Simple_repeat 2 91 0 4 1490 780 134 47 0 chr5 118731474 118731601 -33805658 + B1_Mur1 SINE Alu 3 135 -14 4 1490 526 14 28 0 chr5 118731601 118731672 -33805587 + (CAAAA)n Simple_repeat Simple_repeat 5 77 0 4 1490 1248 143 9 23 chr5 118731722 118731937 -33805322 - B3 SINE B2 0 216 5 4 1490 276 247 0 90 chr5 118732429 118732518 -33804741 - ID4 SINE ID -2 81 1 4 1490 475 276 45 0 chr5 118732522 118732656 -33804603 - B1F SINE Alu -7 142 3 4 1490 380 336 21 35 chr5 118732707 118732852 -33804407 - ID_B1 SINE B4 0 224 82 4 1490 240 220 60 90 chr5 118732856 118732956 -33804303 - PB1D7 SINE Alu -8 112 13 4 1490 805 164 5 26 chr5 118733417 118733797 -33803462 + (TATG)n Simple_repeat Simple_repeat 1 372 0 4 1490 378 323 188 26 chr5 118733797 118734175 -33803084 - L1M5 LINE L1 -762 5384 4946 4 1490 26 0 0 0 chr5 118734191 118734217 -33803042 + AT_rich Low_complexity Low_complexity 1 26 0 4 1490 642 276 13 13 chr5 118734254 118734412 -33802847 - RSINE1 SINE B4 0 165 8 4 1490 300 91 0 0 chr5 118735210 118735254 -33802005 + (T)n Simple_repeat Simple_repeat 1 44 0 4 1490 210 227 0 0 chr5 118735865 118735909 -33801350 + PB1D7 SINE Alu 77 120 0 4 1490 244 222 0 45 chr5 118736039 118736105 -33801154 - L1MA10 LINE L1 -2 6332 6270 4 1490 189 0 0 0 chr5 118736294 118736315 -33800944 + (TA)n Simple_repeat Simple_repeat 2 22 0 4 1490 324 0 0 0 chr5 118736315 118736350 -33800909 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1490 768 161 0 0 chr5 118736416 118736578 -33800681 + (TG)n Simple_repeat Simple_repeat 1 162 0 4 1490 361 224 0 0 chr5 118736584 118736660 -33800599 - ID4 SINE ID -6 77 2 4 1490 784 240 99 148 chr5 118736870 118737202 -33800057 + MTE2a LTR MaLR 52 367 -12 4 1490 445 165 176 0 chr5 118737362 118737453 -33799806 - PB1D10 SINE Alu -10 107 1 4 1490 564 328 73 46 chr5 118737461 118737937 -33799322 - L1MA9 LINE L1 -192 6120 5632 4 1490 459 301 0 40 chr5 118738075 118738094 -33799165 + ID_B1 SINE B4 79 219 -3 4 1490 472 236 70 8 chr5 118738094 118738222 -33799037 + B1F SINE Alu 9 144 -5 4 1490 353 95 159 0 chr5 118738268 118738331 -33798928 + MTC LTR MaLR 5 77 -344 4 1490 621 128 35 52 chr5 118738361 118738458 -33798801 + B1_Mus2 SINE Alu 29 128 -19 4 1490 756 66 0 16 chr5 118738458 118738582 -33798677 + Lx2 LINE L1 6864 6985 -12 4 1490 621 128 35 52 chr5 118738582 118738599 -33798660 + B1_Mus2 SINE Alu 129 141 -6 4 1490 528 16 0 0 chr5 118738651 118738712 -33798547 + (GA)n Simple_repeat Simple_repeat 2 62 0 4 1490 558 159 7 187 chr5 118738712 118738762 -33798497 + MTC LTR MaLR 44 73 -348 4 1490 1150 36 0 0 chr5 118738762 118738902 -33798357 + B1_Mus1 SINE Alu 1 140 -8 4 1490 558 159 7 187 chr5 118738902 118739006 -33798253 + MTC LTR MaLR 74 170 -251 4 1490 258 241 49 37 chr5 118739283 118739365 -33797894 - B1F1 SINE Alu -39 110 28 4 1490 649 229 49 0 chr5 118739743 118739887 -33797372 - RSINE1 SINE B4 -2 163 13 4 1490 254 109 22 0 chr5 118740014 118740060 -33797199 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1490 477 132 38 0 chr5 118740065 118740171 -33797088 + (TCTG)n Simple_repeat Simple_repeat 3 112 0 4 1490 618 121 0 0 chr5 118740195 118740311 -33796948 + (TC)n Simple_repeat Simple_repeat 1 116 0 4 1490 468 0 0 0 chr5 118740311 118740363 -33796896 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1490 198 280 0 0 chr5 118741031 118741081 -33796178 - MIRm SINE MIR -9 267 218 4 1490 246 218 83 71 chr5 118741205 118741289 -33795970 - ORSL DNA Tip100 -24 251 167 4 1490 531 66 0 0 chr5 118741536 118741612 -33795647 + (TG)n Simple_repeat Simple_repeat 1 76 0 4 1490 274 298 48 0 chr5 118741614 118741698 -33795561 - B3 SINE B2 -53 163 76 4 1490 536 212 26 9 chr5 118741746 118741860 -33795399 - PB1D7 SINE Alu -3 117 2 4 1490 1096 95 0 0 chr5 118741878 118742026 -33795233 - B1_Mus1 SINE Alu 0 148 1 4 1490 261 0 0 0 chr5 118742091 118742120 -33795139 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1490 960 118 0 29 chr5 118742441 118742616 -33794643 + (GGAA)n Simple_repeat Simple_repeat 1 170 0 4 1490 400 243 92 18 chr5 118742668 118742777 -33794482 + PB1D10 SINE Alu 1 117 0 4 1490 457 214 29 19 chr5 118743230 118743335 -33793924 + PB1D10 SINE Alu 12 117 0 4 1490 252 203 232 0 chr5 118743345 118743414 -33793845 + BC1_Mm scRNA scRNA 2 86 -66 4 1490 839 93 23 0 chr5 118743428 118743557 -33793702 + (GAAAA)n Simple_repeat Simple_repeat 5 136 0 4 1490 621 0 0 0 chr5 118743571 118743640 -33793619 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 4 1490 770 296 41 51 chr5 118743651 118743943 -33793316 + B4 SINE B4 2 290 -2 4 1490 297 0 0 0 chr5 118743967 118744000 -33793259 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1490 674 163 37 87 chr5 118744924 118745085 -33792174 - URR1A DNA MER1_type -15 211 59 4 1490 242 305 67 17 chr5 118745293 118745538 -33791721 + RLTR11A LTR ERVK 43 292 -67 4 1490 186 103 0 0 chr5 118745923 118745952 -33791307 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1490 237 65 0 0 chr5 118745952 118745982 -33791277 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 4 1490 451 220 29 0 chr5 118746053 118746226 -33791033 + (TA)n Simple_repeat Simple_repeat 2 179 0 4 1490 304 288 62 9 chr5 118746486 118746598 -33790661 + MLT1A1 LTR MaLR 291 408 0 4 1490 1501 116 0 13 chr5 118746659 118746887 -33790372 + URR1B DNA MER1_type 1 225 0 4 1490 228 296 0 0 chr5 118746948 118747019 -33790240 + ID4 SINE ID 2 72 -11 4 1490 582 15 0 0 chr5 118747097 118747164 -33790095 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 1490 225 0 0 0 chr5 118747164 118747188 -33790071 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1490 379 236 161 77 chr5 118748610 118748829 -33788430 - L1ME1 LINE L1 -54 6125 5885 5 1490 1245 96 0 26 chr5 118748829 118749022 -33788237 - B2_Mm2 SINE B2 -7 188 1 5 1490 379 236 161 77 chr5 118749022 118749138 -33788121 - L1ME1 LINE L1 -295 5884 5762 5 1490 255 103 0 0 chr5 118749144 118749183 -33788076 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1490 497 200 0 0 chr5 118749196 118749291 -33787968 - B4A SINE B4 -14 278 184 5 1490 416 293 32 39 chr5 118749456 118749612 -33787647 - RSINE1 SINE B4 0 165 11 5 1490 208 0 62 0 chr5 118750005 118750037 -33787222 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5 1490 458 123 45 15 chr5 118750463 118750595 -33786664 + (TCTCTG)n Simple_repeat Simple_repeat 2 137 0 5 1490 232 79 26 0 chr5 118750868 118750906 -33786353 - MER117 DNA MER1_type -38 159 121 5 1491 441 66 0 0 chr5 118751313 118751374 -33785885 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1491 410 238 144 15 chr5 118751404 118751536 -33785723 - B4A SINE B4 -50 242 94 5 1491 261 243 140 37 chr5 118751503 118751610 -33785649 - B3A SINE B2 -79 119 2 5 1491 253 271 43 0 chr5 118751718 118751788 -33785471 + ID4_ SINE ID 5 77 -6 5 1491 239 250 45 91 chr5 118751788 118751806 -33785453 + ID SINE ID 5 88 -136 5 1491 1358 79 16 0 chr5 118751928 118752118 -33785141 - B2_Mm2 SINE B2 -1 194 2 5 1491 654 291 28 22 chr5 118752305 118752484 -33784775 - ID_B1 SINE B4 -3 221 42 5 1491 189 0 0 0 chr5 118752547 118752568 -33784691 + (TC)n Simple_repeat Simple_repeat 2 22 0 5 1491 403 266 9 17 chr5 118753196 118753311 -33783948 - PB1D10 SINE Alu -2 115 2 5 1491 452 308 33 32 chr5 118753630 118753981 -33783278 + (CATG)n Simple_repeat Simple_repeat 1 351 0 5 1491 242 315 0 14 chr5 118754611 118754685 -33782574 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1491 619 283 13 0 chr5 118754688 118754840 -33782419 - RSINE1 SINE B4 0 165 12 5 1491 918 33 25 0 chr5 118754891 118755012 -33782247 + B1_Mus2 SINE Alu 23 146 -1 5 1491 204 40 0 0 chr5 118755013 118755038 -33782221 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 5 1491 535 295 52 67 chr5 118755373 118755642 -33781617 - L1MB3 LINE L1 -136 6047 5783 5 1491 687 134 76 0 chr5 118755751 118755870 -33781389 + B1F SINE Alu 2 129 -20 5 1491 351 113 0 0 chr5 118755871 118755924 -33781335 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 5 1491 1355 84 5 5 chr5 118755926 118756117 -33781142 - B2_Mm2 SINE B2 -2 193 3 5 1491 363 216 22 33 chr5 118757002 118757093 -33780166 + B4A SINE B4 2 91 -201 5 1491 308 269 6 34 chr5 118757127 118757304 -33779955 + (CATA)n Simple_repeat Simple_repeat 4 175 0 5 1491 612 224 69 7 chr5 118758009 118758153 -33779106 + RSINE1 SINE B4 1 153 -12 5 1491 629 234 8 0 chr5 118758162 118758290 -33778969 - RSINE1 SINE B4 -35 130 2 5 1491 548 162 0 9 chr5 118758363 118758469 -33778790 + CT-rich Low_complexity Low_complexity 4 108 0 5 1491 347 110 336 84 chr5 118758472 118758591 -33778668 - B2_Mm2 SINE B2 0 195 47 5 1491 1171 124 11 0 chr5 118758675 118758852 -33778407 - B2_Mm1t SINE B2 -14 179 1 5 1491 288 0 0 0 chr5 118759834 118759866 -33777393 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1491 333 68 0 0 chr5 118759866 118759909 -33777350 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1491 288 258 30 30 chr5 118759910 118760010 -33777249 + (CATATA)n Simple_repeat Simple_repeat 2 101 0 5 1491 272 252 7 21 chr5 118760013 118760096 -33777163 + (CA)n Simple_repeat Simple_repeat 1 83 0 5 1491 372 43 0 0 chr5 118760096 118760142 -33777117 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1491 272 252 7 21 chr5 118760142 118760200 -33777059 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1491 211 255 0 39 chr5 118760229 118760331 -33776928 + (CATATA)n Simple_repeat Simple_repeat 5 102 0 5 1491 450 0 0 0 chr5 118760838 118760888 -33776371 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1491 384 323 84 5 chr5 118761374 118761564 -33775695 - Lx8 LINE L1 -181 7292 7088 5 1491 1001 8 8 0 chr5 118761595 118761713 -33775546 + (TCC)n Simple_repeat Simple_repeat 2 120 0 5 1491 291 301 31 18 chr5 118761749 118761888 -33775371 - B1F1 SINE Alu -3 146 1 5 1491 306 348 12 64 chr5 118761965 118762137 -33775122 - MIRc SINE MIR -80 188 26 5 1491 276 174 0 0 chr5 118762378 118762424 -33774835 - Lx2B LINE L1 -253 6747 6702 5 1491 328 197 0 0 chr5 118762424 118762500 -33774759 + Lx2B LINE L1 6923 6998 -2 5 1491 198 0 0 0 chr5 118762520 118762542 -33774717 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 5 1491 1193 48 0 0 chr5 118763187 118763334 -33773925 + B1_Mus2 SINE Alu 1 147 0 5 1491 207 0 0 0 chr5 118763343 118763366 -33773893 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5 1491 366 123 0 0 chr5 118763366 118763423 -33773836 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 5 1491 364 184 52 103 chr5 118763652 118763749 -33773510 - PB1D10 SINE Alu -6 111 20 5 1491 264 178 13 27 chr5 118763797 118763872 -33773387 + T-rich Low_complexity Low_complexity 1 74 0 5 1491 1450 35 0 26 chr5 118764515 118764745 -33772514 + (CATATA)n Simple_repeat Simple_repeat 1 223 0 5 1491 2039 89 45 63 chr5 118764755 118765089 -33772170 - ORR1A4 LTR MaLR 0 329 2 5 1491 770 155 14 0 chr5 118765115 118765263 -33771996 + (TAGA)n Simple_repeat Simple_repeat 1 150 0 5 1491 675 253 24 0 chr5 118765278 118765444 -33771815 - ID_B1 SINE B4 -54 170 1 5 1491 188 135 0 26 chr5 118765566 118765604 -33771655 + (TAA)n Simple_repeat Simple_repeat 1 37 0 5 1491 653 150 26 9 chr5 118765653 118765767 -33771492 - B1F2 SINE Alu 0 149 34 5 1491 373 216 16 94 chr5 118765905 118766033 -33771226 - MIRc SINE MIR -66 202 85 5 1491 465 295 0 0 chr5 118766136 118766248 -33771011 + PB1D10 SINE Alu 1 112 -5 5 1491 459 35 0 0 chr5 118766249 118766306 -33770953 + (CA)n Simple_repeat Simple_repeat 1 57 0 5 1491 311 225 214 0 chr5 118766411 118766500 -33770759 - MIR SINE MIR -116 146 39 5 1491 183 278 19 0 chr5 118766775 118766829 -33770430 - MIRb SINE MIR -148 120 66 5 1491 651 172 0 33 chr5 118767041 118767221 -33770038 + (TCTG)n Simple_repeat Simple_repeat 4 177 0 5 1491 295 198 0 35 chr5 118767232 118767347 -33769912 + (TCTG)n Simple_repeat Simple_repeat 4 114 0 5 1491 496 201 6 11 chr5 118767366 118767542 -33769717 + (TCTG)n Simple_repeat Simple_repeat 4 178 0 5 1491 232 208 0 36 chr5 118767846 118767901 -33769358 + CT-rich Low_complexity Low_complexity 3 55 0 5 1491 396 222 17 8 chr5 118767912 118768020 -33769239 - PB1D10 SINE Alu -12 105 1 5 1491 216 243 0 54 chr5 118767956 118768030 -33769229 - B4A SINE B4 -147 145 76 5 1491 291 114 0 0 chr5 118768230 118768274 -33768985 + (TGG)n Simple_repeat Simple_repeat 1 44 0 5 1491 378 0 0 0 chr5 118768347 118768389 -33768870 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1491 341 217 121 0 chr5 118768393 118768476 -33768783 - RSINE1 SINE B4 -70 95 3 5 1491 636 14 0 0 chr5 118768748 118768821 -33768438 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1491 24 32 0 0 chr5 118768908 118768939 -33768320 + GC_rich Low_complexity Low_complexity 1 31 0 5 1491 250 297 20 71 chr5 118769288 118769386 -33767873 + MIRc SINE MIR 74 166 -102 5 1491 1180 111 37 0 chr5 118769600 118769789 -33767470 - URR1A DNA MER1_type 0 226 31 5 1491 451 227 0 0 chr5 118769952 118770040 -33767219 + PB1D10 SINE Alu 12 99 -18 5 1491 443 255 39 0 chr5 118770152 118770254 -33767005 + ID_B1 SINE B4 116 221 -3 5 1491 409 258 41 0 chr5 118770893 118770990 -33766269 - PB1D10 SINE Alu -10 107 7 5 1491 627 259 0 0 chr5 118770994 118771125 -33766134 + RSINE1 SINE B4 2 132 -33 5 1491 682 232 7 0 chr5 118771321 118771459 -33765800 + ID_B1 SINE B4 86 224 0 5 1491 328 275 0 68 chr5 118771543 118771660 -33765599 + MLT1D LTR MaLR 389 497 -8 5 1491 225 0 0 0 chr5 118772362 118772387 -33764872 + (T)n Simple_repeat Simple_repeat 1 25 0 5 1491 219 36 0 0 chr5 118772921 118772949 -33764310 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1491 232 346 18 18 chr5 118772961 118773070 -33764189 + (TATG)n Simple_repeat Simple_repeat 2 110 0 5 1491 550 125 9 103 chr5 118773350 118773466 -33763793 + URR1B DNA MER1_type 121 225 0 5 1491 263 278 47 17 chr5 118773774 118773946 -33763313 + (TG)n Simple_repeat Simple_repeat 1 177 0 5 1491 298 261 43 31 chr5 118773963 118774291 -33762968 + (TG)n Simple_repeat Simple_repeat 1 332 0 5 1491 668 271 51 0 chr5 118774375 118774552 -33762707 - B4 SINE B4 0 292 107 5 1491 450 208 19 9 chr5 118774587 118774694 -33762565 - B1F1 SINE Alu -32 117 10 5 1491 1903 135 98 12 chr5 118775332 118775670 -33761589 - ORR1B2 LTR MaLR 0 367 1 5 1491 1021 235 77 4 chr5 118775719 118775980 -33761279 + B4A SINE B4 3 282 -10 5 1491 293 304 67 13 chr5 118776040 118776190 -33761069 + L1MC4a LINE L1 7649 7806 -76 5 1491 324 0 0 0 chr5 118776224 118776260 -33760999 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1491 812 240 78 0 chr5 118776423 118776627 -33760632 - ID_B1 SINE B4 0 224 5 5 1491 597 127 16 25 chr5 118776651 118776772 -33760487 + GA-rich Low_complexity Low_complexity 2 121 0 5 1491 239 188 40 80 chr5 118777072 118777147 -33760112 + polypyrimidine Low_complexity Low_complexity 4 75 0 5 1491 270 0 0 0 chr5 118777408 118777438 -33759821 + (T)n Simple_repeat Simple_repeat 1 30 0 5 1491 210 213 75 62 chr5 118777512 118777592 -33759667 + MER5A DNA MER1_type 8 88 -101 5 1491 180 0 0 0 chr5 118777762 118777782 -33759477 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5 1491 511 53 27 0 chr5 118777821 118777896 -33759363 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 6 1491 345 24 0 0 chr5 118778669 118778711 -33758548 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1491 327 331 49 31 chr5 118778976 118779138 -33758121 + MER20 DNA MER1_type 24 188 -31 6 1491 347 284 18 9 chr5 118779279 118779389 -33757870 + MER117 DNA MER1_type 77 187 -10 6 1491 194 291 35 88 chr5 118780874 118780987 -33756272 - MIRb SINE MIR -67 201 95 6 1491 269 264 97 62 chr5 118781069 118781182 -33756077 - PB1D10 SINE Alu 0 117 1 6 1491 739 217 90 11 chr5 118781182 118781259 -33756000 - ID_B1 SINE B4 -129 95 5 6 1491 222 171 0 0 chr5 118782085 118782126 -33755133 + (CGG)n Simple_repeat Simple_repeat 1 41 0 6 1491 187 301 46 46 chr5 118782494 118782581 -33754678 + MIRc SINE MIR 83 169 -99 6 1491 488 115 81 63 chr5 118782972 118783083 -33754176 - PB1D9 SINE Alu 0 120 8 6 1491 345 200 0 67 chr5 118783018 118783093 -33754166 - B4A SINE B4 -140 152 83 6 1491 572 200 9 0 chr5 118783291 118783401 -33753858 + PB1D10 SINE Alu 2 112 -5 6 1491 369 0 0 0 chr5 118783411 118783452 -33753807 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1491 708 246 36 10 chr5 118783452 118783645 -33753614 + B3 SINE B2 13 210 -6 6 1491 1969 141 30 11 chr5 118783959 118784376 -33752883 - ORR1A2 LTR MaLR 0 394 5 6 1491 788 281 83 50 chr5 118784466 118784743 -33752516 + B4 SINE B4 1 286 -6 6 1491 498 290 23 0 chr5 118785020 118785151 -33752108 - B1_Mur1 SINE Alu -10 139 6 6 1491 609 213 22 0 chr5 118785224 118785455 -33751804 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 6 1491 521 339 31 0 chr5 118785500 118785727 -33751532 - L1M5 LINE L1 -392 5732 5499 6 1491 247 282 13 0 chr5 118785814 118785963 -33751296 + (TGGA)n Simple_repeat Simple_repeat 2 152 0 6 1491 955 142 13 0 chr5 118786249 118786567 -33750692 + (TCCA)n Simple_repeat Simple_repeat 1 322 0 6 1491 1214 116 11 10 chr5 118786586 118788104 -33749155 + (TCCA)n Simple_repeat Simple_repeat 1 1518 0 6 1491 330 333 68 36 chr5 118788882 118789103 -33748156 + MER74A LTR ERVL 41 268 -290 6 1491 1350 70 5 5 chr5 118789229 118789416 -33747843 - B2_Mm2 SINE B2 -5 190 4 6 1491 207 162 0 0 chr5 118789500 118789537 -33747722 + CT-rich Low_complexity Low_complexity 3 39 0 6 1491 317 109 0 18 chr5 118789562 118789618 -33747641 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 6 1491 21 0 0 0 chr5 118790275 118790296 -33746963 + GC_rich Low_complexity Low_complexity 1 21 0 6 1491 392 335 12 30 chr5 118790641 118790810 -33746449 - MLT1K LTR MaLR -5 590 425 6 1491 843 139 7 21 chr5 118791128 118791268 -33745991 + B1_Mur3 SINE Alu 1 138 -11 6 1491 285 29 0 0 chr5 118791268 118791302 -33745957 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1491 1202 41 0 0 chr5 118791598 118791745 -33745514 + B1_Mus1 SINE Alu 2 148 0 6 1491 794 213 5 18 chr5 118792610 118793025 -33744234 + (TGGA)n Simple_repeat Simple_repeat 1 409 0 6 1491 949 126 11 0 chr5 118793038 118793213 -33744046 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 6 1491 203 317 64 40 chr5 118794156 118794281 -33742978 - MIRb SINE MIR -95 173 46 6 1491 605 313 51 24 chr5 118794381 118794636 -33742623 + B4A SINE B4 1 262 -30 6 1491 492 267 0 0 chr5 118795836 118796016 -33741243 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 6 1491 466 230 7 7 chr5 118796053 118796202 -33741057 + (TCCA)n Simple_repeat Simple_repeat 2 150 0 6 1491 598 212 8 12 chr5 118796240 118796487 -33740772 + (TCCA)n Simple_repeat Simple_repeat 1 245 0 6 1491 763 177 12 0 chr5 118796501 118796665 -33740594 + (TCCA)n Simple_repeat Simple_repeat 1 166 0 6 1491 224 278 216 105 chr5 118796987 118797049 -33740210 + B4A SINE B4 42 197 -95 6 1491 532 152 29 39 chr5 118797049 118797152 -33740107 + B1_Mur1 SINE Alu 42 143 -6 6 1491 224 278 216 105 chr5 118797152 118797168 -33740091 + B4A SINE B4 198 242 -50 6 1491 270 240 0 0 chr5 118797164 118797214 -33740045 + tRNA-Ala-GCA tRNA tRNA 1 50 -25 6 1491 1230 86 6 6 chr5 118797217 118797393 -33739866 + B2_Mm2 SINE B2 1 176 -19 6 1491 215 125 0 24 chr5 118797393 118797434 -33739825 + (GGA)n Simple_repeat Simple_repeat 2 41 0 6 1491 3836 180 53 53 chr5 118797435 118798332 -33738927 + RMER13B LTR ERVK 12 908 0 6 1491 262 245 0 36 chr5 118798409 118798464 -33738795 + B4 SINE B4 220 272 -20 6 1491 432 0 0 0 chr5 118798475 118798523 -33738736 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1491 372 319 19 65 chr5 118798575 118798588 -33738671 + ID_B1 SINE B4 78 151 -73 6 1491 515 242 38 53 chr5 118798588 118798719 -33738540 + B1F SINE Alu 11 139 -10 6 1491 264 380 16 32 chr5 118799374 118799499 -33737760 + MER58A DNA MER1_type 85 207 -17 6 1491 767 183 0 0 chr5 118799878 118800009 -33737250 + B1_Mur1 SINE Alu 2 132 -17 6 1491 321 156 0 0 chr5 118800026 118800103 -33737156 + CT-rich Low_complexity Low_complexity 2 78 0 6 1491 444 62 0 0 chr5 118800103 118800167 -33737092 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1491 2786 122 7 0 chr5 118800421 118800839 -33736420 + MTC LTR MaLR 1 421 0 6 1491 475 234 39 90 chr5 118801015 118801170 -33736089 - B3A SINE B2 -4 194 48 6 1491 681 260 172 28 chr5 118801224 118801544 -33735715 - RLTR9A LTR ERVK 0 368 3 6 1491 871 171 53 0 chr5 118801547 118801717 -33735542 + ORR1C1 LTR MaLR 2 180 -198 6 1491 627 206 9 18 chr5 118801717 118801941 -33735318 + CT-rich Low_complexity Low_complexity 1 221 0 6 1491 406 119 0 0 chr5 118802037 118802096 -33735163 + ORR1C1 LTR MaLR 326 384 0 6 1491 227 241 0 0 chr5 118802303 118802357 -33734902 + MER103 DNA DNA 53 106 -60 6 1491 186 43 0 0 chr5 118802624 118802647 -33734612 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6 1491 433 234 72 0 chr5 118802662 118802773 -33734486 + ID_B1 SINE B4 104 222 -2 6 1491 230 231 0 97 chr5 118803113 118803151 -33734108 + B4 SINE B4 1 32 -260 6 1491 1553 141 206 69 chr5 118803151 118803530 -33733729 + RMER10A LTR ERVL 1 434 -8 6 1491 758 81 9 0 chr5 118803530 118803641 -33733618 + (TCC)n Simple_repeat Simple_repeat 3 114 0 6 1491 230 231 0 97 chr5 118803650 118803683 -33733576 + B4 SINE B4 33 65 -227 6 1491 327 324 14 35 chr5 118804150 118804294 -33732965 + C-rich Low_complexity Low_complexity 4 144 0 6 1491 382 232 12 0 chr5 118804504 118804668 -33732591 + (CA)n Simple_repeat Simple_repeat 2 167 0 6 1491 339 173 0 0 chr5 118804713 118804794 -33732465 + (CA)n Simple_repeat Simple_repeat 2 82 0 6 1491 211 278 0 18 chr5 118805685 118805740 -33731519 - ID2 SINE ID -29 54 1 6 1491 204 158 0 0 chr5 118805780 118805818 -33731441 + CT-rich Low_complexity Low_complexity 4 41 0 6 1491 332 167 181 0 chr5 118806635 118806707 -33730552 + B4A SINE B4 1 85 -207 6 1491 2453 154 5 7 chr5 118806717 118807130 -33730129 + MTC LTR MaLR 2 413 -8 6 1491 490 299 36 0 chr5 118807128 118807265 -33729994 + B4A SINE B4 85 226 -66 6 1491 674 249 25 40 chr5 118807282 118807483 -33729776 + B3A SINE B2 1 198 0 6 1491 289 267 0 118 chr5 118807491 118807576 -33729683 + B4A SINE B4 218 292 0 6 1491 632 229 2 2 chr5 118807576 118808074 -33729185 + (CA)n Simple_repeat Simple_repeat 1 498 0 6 1491 309 313 40 10 chr5 118808185 118808285 -33728974 + L1MEb LINE L1 903 1005 -5065 6 1491 523 149 11 0 chr5 118809294 118809388 -33727871 - ID_B1 SINE B4 -2 222 128 6 1491 322 229 138 0 chr5 118809388 118809403 -33727856 - B1_Mur1 SINE Alu -2 147 24 6 1491 29 28 0 0 chr5 118809675 118809711 -33727548 + AT_rich Low_complexity Low_complexity 1 36 0 6 1491 231 61 0 0 chr5 118810062 118810095 -33727164 + (TGGG)n Simple_repeat Simple_repeat 3 35 0 6 1491 216 167 0 0 chr5 118810496 118810544 -33726715 + CT-rich Low_complexity Low_complexity 2 49 0 6 1491 264 347 0 0 chr5 118811422 118811494 -33725765 - ID SINE ID -152 72 1 6 1491 252 284 0 15 chr5 118812017 118812085 -33725174 + ID4_ SINE ID 1 67 -16 6 1491 390 239 10 52 chr5 118812337 118812434 -33724825 + B3A SINE B2 8 100 -98 6 1491 765 110 0 23 chr5 118812505 118812635 -33724624 + B1_Mur2 SINE Alu 10 136 -13 6 1491 342 0 0 0 chr5 118812635 118812673 -33724586 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 6 1491 682 311 103 10 chr5 118813535 118813837 -33723422 - MT2A LTR ERVL -4 529 200 6 1491 332 138 15 0 chr5 118813848 118813913 -33723346 + (TCCA)n Simple_repeat Simple_repeat 4 69 0 6 1491 483 207 13 7 chr5 118813964 118814115 -33723144 + (TCCA)n Simple_repeat Simple_repeat 4 155 0 6 1491 342 0 0 0 chr5 118815113 118815151 -33722108 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1491 620 207 17 23 chr5 118816024 118816328 -33720931 + CT-rich Low_complexity Low_complexity 1 301 0 6 1491 359 211 0 19 chr5 118816339 118816445 -33720814 + CT-rich Low_complexity Low_complexity 1 104 0 6 1491 228 345 0 0 chr5 118816445 118816503 -33720756 - ID4_ SINE ID -2 81 24 6 1491 370 269 92 8 chr5 118816543 118816674 -33720585 - ID_B1 SINE B4 0 224 83 6 1491 240 294 41 32 chr5 118816831 118816954 -33720305 + MLT1C LTR MaLR 336 459 -8 6 1491 336 178 0 0 chr5 118817128 118817201 -33720058 + (CA)n Simple_repeat Simple_repeat 1 73 0 6 1491 370 203 17 0 chr5 118817485 118817603 -33719656 + (TG)n Simple_repeat Simple_repeat 2 121 0 6 1491 497 253 0 6 chr5 118817622 118817801 -33719458 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 1491 375 207 5 53 chr5 118817817 118818006 -33719253 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1491 644 228 178 13 chr5 118818006 118818242 -33719017 - B4A SINE B4 0 292 18 6 1491 418 189 0 82 chr5 118818534 118818632 -33718627 - ID_B1 SINE B4 -54 170 81 6 1491 867 207 56 6 chr5 118818677 118818857 -33718402 + ID_B1 SINE B4 36 224 0 6 1491 721 199 7 0 chr5 118819127 118819263 -33717996 - B3 SINE B2 -79 137 1 6 1491 262 270 67 11 chr5 118819264 118819354 -33717905 - Tigger7 DNA MER2_type -121 2370 2276 6 1491 325 270 0 0 chr5 118819352 118819426 -33717833 - Tigger7 DNA MER2_type -2373 118 45 6 1491 216 0 0 0 chr5 118819689 118819713 -33717546 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1491 218 234 0 41 chr5 118819758 118819807 -33717452 - ID_B1 SINE B4 -95 129 83 6 1491 2714 139 67 6 chr5 118819845 118820338 -33716921 + Lx4B LINE L1 6518 7040 -18 6 1491 417 81 0 0 chr5 118820338 118820400 -33716859 + (CATA)n Simple_repeat Simple_repeat 2 63 0 6 1491 814 186 142 11 chr5 118820409 118820599 -33716660 + B3 SINE B2 2 216 0 6 1491 41 0 0 36 chr5 118820599 118820635 -33716624 + AT_rich Low_complexity Low_complexity 1 35 0 6 1491 1152 61 0 0 chr5 118820635 118820782 -33716477 + B1_Mus2 SINE Alu 1 147 0 6 1491 41 0 0 36 chr5 118820782 118820801 -33716458 + AT_rich Low_complexity Low_complexity 1 19 0 6 1491 760 220 0 0 chr5 118820814 118820955 -33716304 - B1_Mur1 SINE Alu 0 149 9 6 1491 295 254 0 0 chr5 118821038 118821097 -33716162 - RSINE1 SINE B4 -10 155 97 7 1491 891 230 4 74 chr5 118821117 118821361 -33715898 - MTD LTR MaLR -192 227 1 7 1491 1896 142 119 5 chr5 118822102 118822471 -33714788 + MTD LTR MaLR 1 411 -8 7 1491 1247 76 49 5 chr5 118822539 118822724 -33714535 + B2_Mm2 SINE B2 2 194 -1 7 1491 404 297 113 44 chr5 118822995 118823224 -33714035 + L1MB5 LINE L1 5827 6071 -103 7 1491 673 269 33 14 chr5 118823322 118823533 -33713726 - ID_B1 SINE B4 -9 215 1 7 1491 195 42 0 0 chr5 118823740 118823764 -33713495 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1491 189 0 0 0 chr5 118824257 118824278 -33712981 + (TG)n Simple_repeat Simple_repeat 1 21 0 7 1491 240 332 176 12 chr5 118824321 118824571 -33712688 - B4 SINE B4 0 292 2 7 1491 399 171 0 0 chr5 118824576 118824652 -33712607 + (TG)n Simple_repeat Simple_repeat 1 76 0 7 1491 355 282 0 0 chr5 118824662 118824740 -33712519 - RMER30 DNA MER1_type -120 82 5 7 1491 354 23 0 0 chr5 118824889 118824932 -33712327 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1491 246 327 8 34 chr5 118825912 118826029 -33711230 + MLT1K LTR MaLR 369 482 -113 7 1491 217 219 0 0 chr5 118826302 118826343 -33710916 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1491 430 299 21 84 chr5 118826349 118826539 -33710720 - B4A SINE B4 0 292 115 7 1491 428 203 6 33 chr5 118826830 118827013 -33710246 + (TG)n Simple_repeat Simple_repeat 2 179 0 7 1491 210 275 14 0 chr5 118827030 118827099 -33710160 + (TG)n Simple_repeat Simple_repeat 1 70 0 7 1491 232 237 8 8 chr5 118827170 118827302 -33709957 + (TG)n Simple_repeat Simple_repeat 1 132 0 7 1491 426 101 0 0 chr5 118827329 118827398 -33709861 + (TG)n Simple_repeat Simple_repeat 1 69 0 7 1491 538 280 98 11 chr5 118827947 118828131 -33709128 - ID_B1 SINE B4 -20 204 5 7 1491 403 265 72 22 chr5 118828191 118828330 -33708929 - RSINE1 SINE B4 -19 146 1 7 1491 1172 168 5 23 chr5 118828363 118828582 -33708677 + B3 SINE B2 1 215 -1 7 1491 280 281 93 129 chr5 118829432 118829571 -33707688 - L2b LINE L2 -13 3374 3241 7 1491 180 111 0 0 chr5 118830054 118830081 -33707178 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1491 186 43 0 0 chr5 118830569 118830592 -33706667 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 7 1491 205 240 0 0 chr5 118831083 118831133 -33706126 + G-rich Low_complexity Low_complexity 1 50 0 7 1491 394 268 17 26 chr5 118831712 118831827 -33705432 + PB1D9 SINE Alu 2 115 -5 7 1491 245 324 55 18 chr5 118831872 118831982 -33705277 - RSINE1 SINE B4 -41 124 11 7 1491 1110 82 0 6 chr5 118832144 118832303 -33704956 + B2_Mm2 SINE B2 1 158 -37 7 1491 387 0 0 0 chr5 118832304 118832347 -33704912 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 7 1491 385 162 71 48 chr5 118832540 118832624 -33704635 + B3A SINE B2 1 86 -112 7 1491 517 322 84 7 chr5 118832800 118833099 -33704160 - L1MB5 LINE L1 -288 5896 5577 7 1491 249 220 0 0 chr5 118833383 118833433 -33703826 - B1F1 SINE Alu -94 55 6 7 1491 459 0 0 0 chr5 118834672 118834723 -33702536 + (TC)n Simple_repeat Simple_repeat 2 52 0 7 1491 324 70 0 0 chr5 118834723 118834765 -33702494 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1491 329 319 26 66 chr5 118834805 118834956 -33702303 - B4A SINE B4 -145 147 3 7 1491 239 333 11 0 chr5 118835238 118835328 -33701931 + L1M5 LINE L1 5618 5708 -416 7 1491 430 250 0 0 chr5 118835739 118835831 -33701428 - ID_B1 SINE B4 0 224 133 7 1491 522 248 141 0 chr5 118836472 118836621 -33700638 + ID_B1 SINE B4 1 170 -54 7 1491 830 190 94 9 chr5 118837453 118837666 -33699593 - RMER4B LTR ERVK -338 247 17 7 1491 560 283 0 39 chr5 118837723 118837903 -33699356 - B4 SINE B4 -118 174 2 7 1491 550 177 62 0 chr5 118837919 118838015 -33699244 - B1F SINE Alu -21 128 27 7 1491 432 232 0 31 chr5 118838048 118838146 -33699113 + PB1D10 SINE Alu 1 95 -22 7 1491 648 211 0 15 chr5 118838146 118838181 -33699078 + ID_B1 SINE B4 104 210 -14 7 1491 219 114 0 0 chr5 118838181 118838216 -33699043 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 7 1491 1175 176 9 0 chr5 118838893 118839103 -33698156 + ORR1B1 LTR MaLR 174 385 -9 7 1491 280 290 14 0 chr5 118839769 118839838 -33697421 + ID4_ SINE ID 11 80 -3 7 1491 531 242 0 0 chr5 118839838 118840168 -33697091 + (CA)n Simple_repeat Simple_repeat 1 330 0 7 1491 639 90 120 0 chr5 118842242 118842342 -33694917 + B2_Mm2 SINE B2 2 113 -82 7 1491 252 86 0 0 chr5 118842347 118842382 -33694877 + (ATG)n Simple_repeat Simple_repeat 2 36 0 7 1491 917 144 0 6 chr5 118842382 118842543 -33694716 + (GAA)n Simple_repeat Simple_repeat 2 161 0 7 1491 357 252 7 2 chr5 118842664 118842764 -33694495 + PB1D10 SINE Alu 19 120 0 7 1491 637 270 96 5 chr5 118842789 118842986 -33694273 + ID_B1 SINE B4 2 216 -8 7 1491 1003 180 0 30 chr5 118843538 118843738 -33693521 + B3 SINE B2 1 194 -22 7 1491 2539 128 14 33 chr5 118843738 118843934 -33693325 - MTC LTR MaLR 0 421 226 7 1491 2170 73 0 153 chr5 118843934 118844320 -33692939 - ORR1A2 LTR MaLR 0 327 1 7 1491 2539 128 14 33 chr5 118844320 118844552 -33692707 - MTC LTR MaLR -196 225 1 7 1491 216 0 0 0 chr5 118844745 118844769 -33692490 + (TA)n Simple_repeat Simple_repeat 2 25 0 7 1491 551 219 9 9 chr5 118845071 118845186 -33692073 - B1_Mur2 SINE Alu -32 117 3 7 1491 315 349 0 23 chr5 118845186 118845200 -33692059 - ID_B1 SINE B4 -29 195 70 7 1491 744 166 0 0 chr5 118845216 118845460 -33691799 + (CA)n Simple_repeat Simple_repeat 1 244 0 7 1491 307 194 27 40 chr5 118845466 118845541 -33691718 + HAL1-3A_ME LINE L1 1975 2048 -810 7 1491 374 262 195 62 chr5 118845543 118845726 -33691533 + ID_B1 SINE B4 4 213 -11 7 1491 243 0 0 0 chr5 118845726 118845753 -33691506 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1491 374 262 195 62 chr5 118845753 118845764 -33691495 + ID_B1 SINE B4 214 224 0 7 1491 228 67 0 0 chr5 118845859 118845889 -33691370 + (CAT)n Simple_repeat Simple_repeat 2 31 0 7 1491 185 35 69 0 chr5 118845939 118845968 -33691291 + (CCCA)n Simple_repeat Simple_repeat 4 34 0 7 1491 303 215 105 21 chr5 118847093 118847188 -33690071 - B4 SINE B4 -29 263 161 7 1491 560 225 163 31 chr5 118847379 118847625 -33689634 + MTD LTR MaLR 139 418 -1 7 1491 319 244 13 0 chr5 118847627 118847705 -33689554 + MER103 DNA DNA 40 118 -48 7 1491 247 325 0 0 chr5 118848901 118848978 -33688281 - ID4 SINE ID -2 81 5 7 1491 378 0 0 0 chr5 118848994 118849036 -33688223 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 7 1491 458 268 24 8 chr5 118849095 118849219 -33688040 - RSINE1 SINE B4 -38 127 2 7 1491 378 157 180 0 chr5 118849222 118849311 -33687948 - ID_B1 SINE B4 -1 223 119 7 1491 319 284 5 88 chr5 118849337 118849464 -33687795 - PB1D10 SINE Alu 0 120 1 7 1491 521 206 41 0 chr5 118849471 118849584 -33687675 - PB1D7 SINE Alu -2 125 5 7 1491 3244 172 51 80 chr5 118850313 118851098 -33686161 - RMER13B LTR ERVK -146 762 1 7 1491 1148 34 0 40 chr5 118851622 118851774 -33685485 + B1_Mus2 SINE Alu 1 146 -1 7 1491 193 20 100 20 chr5 118851776 118851826 -33685433 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 7 1491 407 154 154 0 chr5 118851966 118852044 -33685215 + RSINE1 SINE B4 19 108 -57 7 1491 612 0 0 0 chr5 118852067 118852135 -33685124 + (GA)n Simple_repeat Simple_repeat 2 69 0 7 1491 23 0 0 0 chr5 118852143 118852166 -33685093 + AT_rich Low_complexity Low_complexity 1 23 0 7 1491 1744 198 19 48 chr5 118852761 118853138 -33684121 - MTE2a LTR MaLR -13 366 1 7 1491 330 269 6 141 chr5 118853468 118853624 -33683635 + B3A SINE B2 64 198 0 7 1491 265 269 0 29 chr5 118853621 118853690 -33683569 + B4A SINE B4 217 283 -9 7 1491 1111 55 7 0 chr5 118853743 118853889 -33683370 + B1_Mus1 SINE Alu 2 148 0 7 1491 385 301 28 0 chr5 118853912 118854133 -33683126 - Charlie5 DNA MER1_type -113 2511 2254 7 1491 287 281 30 40 chr5 118854155 118854255 -33683004 + PB1D10 SINE Alu 18 116 -1 7 1491 293 330 119 50 chr5 118854456 118854657 -33682602 + MLT1F1 LTR MaLR 68 282 -287 7 1491 1795 171 62 14 chr5 118854705 118855062 -33682197 + MTC LTR MaLR 11 384 -37 7 1491 4412 152 147 11 chr5 118855458 118856005 -33681254 + RLTR25B LTR ERVK 1 591 -437 7 1491 706 35 35 9 chr5 118856005 118856120 -33681139 + (TC)n Simple_repeat Simple_repeat 2 119 0 7 1491 4412 152 147 11 chr5 118856120 118856132 -33681127 + RLTR25B LTR ERVK 592 623 -405 7 1491 829 89 84 49 chr5 118856132 118856274 -33680985 - B1_Mus2 SINE Alu 0 147 1 7 1491 4412 152 147 11 chr5 118856274 118856618 -33680641 + RLTR25B LTR ERVK 624 1027 -1 7 1491 271 222 32 0 chr5 118856622 118856685 -33680574 + CT-rich Low_complexity Low_complexity 2 66 0 7 1491 252 0 0 0 chr5 118857460 118857488 -33679771 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1491 736 284 146 25 chr5 118858090 118858488 -33678771 - L1MB7 LINE L1 -19 6165 5720 7 1491 660 311 102 55 chr5 118858491 118858525 -33678734 + MLT1F1 LTR MaLR 161 194 -375 7 1491 3062 51 15 2 chr5 118858525 118858920 -33678339 - MTB LTR MaLR 0 400 1 7 1491 660 311 102 55 chr5 118858920 118859269 -33677990 + MLT1F1 LTR MaLR 195 562 -7 7 1491 229 284 49 0 chr5 118859390 118859471 -33677788 + MIRb SINE MIR 63 147 -121 7 1491 651 283 76 29 chr5 118860279 118860556 -33676703 + B4 SINE B4 2 291 -1 7 1491 223 122 0 39 chr5 118860650 118860701 -33676558 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 7 1491 922 121 7 0 chr5 118860702 118860843 -33676416 - B1_Mus2 SINE Alu -5 142 1 7 1491 266 233 33 0 chr5 118860963 118861023 -33676236 - RSINE1 SINE B4 -103 62 1 7 1491 631 222 13 40 chr5 118861035 118861185 -33676074 - ID_B1 SINE B4 -3 221 76 7 1491 258 230 40 0 chr5 118861190 118861264 -33675995 + L1MB8 LINE L1 5935 6011 -167 8 1491 404 243 176 0 chr5 118861394 118861530 -33675729 + B3A SINE B2 27 186 -12 8 1491 393 223 47 128 chr5 118862100 118862249 -33675010 + B1F1 SINE Alu 1 137 -12 8 1491 504 105 0 0 chr5 118862249 118862325 -33674934 + (TC)n Simple_repeat Simple_repeat 1 76 0 8 1491 327 304 31 31 chr5 118862888 118863017 -33674242 + B4A SINE B4 24 152 -140 8 1491 210 71 0 0 chr5 118863045 118863073 -33674186 + (GAA)n Simple_repeat Simple_repeat 2 29 0 8 1491 422 162 237 26 chr5 118863085 118863199 -33674060 + B1_Mur1 SINE Alu 11 148 -1 8 1491 515 125 36 72 chr5 118863239 118863377 -33673882 - Lx9 LINE L1 0 7644 7512 8 1491 418 284 19 81 chr5 118863525 118863686 -33673573 + MLT1J1 LTR MaLR 40 190 -254 8 1491 334 302 0 36 chr5 118863784 118863894 -33673365 + MLT1J1 LTR MaLR 337 442 -2 8 1491 972 103 0 40 chr5 118864484 118864636 -33672623 - B1_Mus1 SINE Alu 0 148 3 8 1491 234 0 0 0 chr5 118864689 118864715 -33672544 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1491 2031 103 106 6 chr5 118864727 118865067 -33672192 + MTC LTR MaLR 3 376 -45 8 1491 934 217 52 33 chr5 118865393 118865603 -33671656 - ID_B1 SINE B4 -2 222 9 8 1491 253 293 0 116 chr5 118866291 118866354 -33670905 - MLT1D LTR MaLR -5 500 447 8 1491 1083 80 0 0 chr5 118866354 118866492 -33670767 + B1_Mus1 SINE Alu 2 139 -9 8 1491 234 81 0 0 chr5 118866492 118866529 -33670730 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 1491 253 293 0 116 chr5 118866529 118866576 -33670683 - MLT1D LTR MaLR -59 446 403 8 1491 1539 104 0 13 chr5 118866596 118866829 -33670430 - ORR1A2 LTR MaLR -97 230 1 8 1491 396 71 0 0 chr5 118868568 118868624 -33668635 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1491 288 335 41 0 chr5 118868753 118868918 -33668341 + MIRc SINE MIR 85 262 0 8 1491 207 0 0 0 chr5 118869132 118869155 -33668104 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1491 261 238 16 0 chr5 118869162 118869225 -33668034 + B4A SINE B4 83 146 -146 8 1491 535 236 0 0 chr5 118869170 118869280 -33667979 + PB1D10 SINE Alu 7 116 -1 8 1491 243 312 0 0 chr5 118869408 118869472 -33667787 + GA-rich Low_complexity Low_complexity 4 67 0 8 1491 606 250 0 28 chr5 118869741 118869885 -33667374 + ID_B1 SINE B4 84 223 -1 8 1491 649 181 81 22 chr5 118869901 118870037 -33667222 + B1_Mur1 SINE Alu 5 148 -1 8 1491 594 226 161 0 chr5 118870052 118870238 -33667021 + B3 SINE B2 1 216 0 8 1491 660 135 0 29 chr5 118870266 118870336 -33666923 + polypurine Low_complexity Low_complexity 2 68 0 8 1491 1020 112 6 16 chr5 118870336 118870518 -33666741 + (GGA)n Simple_repeat Simple_repeat 1 180 0 8 1491 660 135 0 29 chr5 118870518 118870584 -33666675 + polypurine Low_complexity Low_complexity 69 134 0 8 1491 688 187 222 6 chr5 118870917 118871084 -33666175 + B3 SINE B2 1 203 -13 8 1491 408 20 0 0 chr5 118871090 118871139 -33666120 + (CAT)n Simple_repeat Simple_repeat 3 51 0 8 1491 371 73 18 0 chr5 118871242 118871297 -33665962 + (CCCCCT)n Simple_repeat Simple_repeat 3 58 0 8 1491 1101 105 0 0 chr5 118871301 118871463 -33665796 + (TTTC)n Simple_repeat Simple_repeat 1 162 0 8 1491 1110 88 0 0 chr5 118871471 118871618 -33665641 + B1_Mus1 SINE Alu 2 148 0 8 1491 251 65 81 0 chr5 118871623 118871685 -33665574 + (CAAAA)n Simple_repeat Simple_repeat 2 68 0 8 1491 443 233 1 0 chr5 118871685 118871812 -33665447 - RMER1A Other Other -10 1020 917 8 1491 280 239 28 14 chr5 118873631 118873703 -33663556 - RSINE1 SINE B4 -40 125 53 8 1491 329 306 51 36 chr5 118874088 118874240 -33663019 + MER20 DNA MER1_type 15 171 -48 8 1491 360 0 0 0 chr5 118874612 118874652 -33662607 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1491 228 231 0 0 chr5 118875042 118875107 -33662152 + T-rich Low_complexity Low_complexity 1 65 0 8 1491 248 235 0 0 chr5 118875606 118875657 -33661602 - L2c LINE L2 -1 3386 3336 8 1491 691 254 57 42 chr5 118875777 118875970 -33661289 + ID_B1 SINE B4 28 223 -1 8 1491 999 57 48 35 chr5 118875974 118876119 -33661140 + B1_Mus2 SINE Alu 1 147 0 8 1491 932 88 0 7 chr5 118876124 118876261 -33660998 + (GAA)n Simple_repeat Simple_repeat 2 137 0 8 1491 564 206 13 36 chr5 118876271 118876684 -33660575 + GA-rich Low_complexity Low_complexity 1 403 0 8 1491 330 256 24 38 chr5 118876886 118877011 -33660248 - MLT1A1 LTR MaLR -16 392 229 8 1491 264 180 0 57 chr5 118877103 118877156 -33660103 - RSINE1 SINE B4 -52 113 64 8 1491 1126 61 0 7 chr5 118877338 118877486 -33659773 - B1_Mus1 SINE Alu 0 148 2 8 1491 241 361 44 22 chr5 118878233 118878369 -33658890 + MIRb SINE MIR 3 141 -127 8 1491 278 180 16 0 chr5 118878374 118878435 -33658824 + CT-rich Low_complexity Low_complexity 1 62 0 8 1491 542 241 109 0 chr5 118878437 118878574 -33658685 - ID_B1 SINE B4 -7 217 66 8 1491 425 232 133 44 chr5 118879383 118879541 -33657718 - B3A SINE B2 -12 186 15 8 1491 1271 96 17 0 chr5 118879595 118879772 -33657487 - B2_Mm2 SINE B2 -14 181 2 8 1491 211 314 0 0 chr5 118880370 118880421 -33656838 + G-rich Low_complexity Low_complexity 6 56 0 8 1491 1046 204 5 46 chr5 118880426 118880587 -33656672 + B3 SINE B2 2 162 -54 8 1491 1653 153 43 107 chr5 118880587 118881025 -33656234 + RMER17C LTR ERVK 1 410 0 8 1491 1046 204 5 46 chr5 118881025 118881079 -33656180 + B3 SINE B2 163 208 -8 8 1491 262 45 22 22 chr5 118881084 118881129 -33656130 + (TTATA)n Simple_repeat Simple_repeat 5 49 0 8 1491 256 350 12 65 chr5 118881150 118881318 -33655941 + L1M5 LINE L1 5721 5879 -285 8 1491 435 19 0 0 chr5 118881321 118881373 -33655886 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1491 492 270 116 11 chr5 118881431 118881604 -33655655 + ID_B1 SINE B4 29 222 -2 8 1491 419 293 53 18 chr5 118881615 118881785 -33655474 + L1MB5 LINE L1 5967 6142 -32 8 1491 352 108 0 51 chr5 118881785 118881796 -33655463 + polypyrimidine Low_complexity Low_complexity 64 74 0 8 1491 1571 45 6 0 chr5 118881796 118882154 -33655105 + (TTC)n Simple_repeat Simple_repeat 1 360 0 8 1491 352 108 0 51 chr5 118882154 118882218 -33655041 + CT-rich Low_complexity Low_complexity 1 63 0 8 1491 993 161 0 0 chr5 118882219 118882251 -33655008 + polypyrimidine Low_complexity Low_complexity 149 180 0 8 186 1266 56 0 22 chr5 118882251 118882434 -33654825 + (TTC)n Simple_repeat Simple_repeat 1 179 0 8 1492 993 161 0 0 chr5 118882434 118882581 -33654678 + polypyrimidine Low_complexity Low_complexity 2 148 0 8 1492 333 271 170 15 chr5 118882598 118882733 -33654526 - L1MEg LINE L1 -4125 1959 1804 8 1492 396 265 0 89 chr5 118882744 118882856 -33654403 - B1_Mur1 SINE Alu -35 114 13 8 1492 512 241 156 10 chr5 118883902 118884079 -33653180 - B3A SINE B2 -3 195 19 8 1492 437 0 19 0 chr5 118884081 118884134 -33653125 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 1492 1309 62 23 0 chr5 118884291 118884467 -33652792 - B2_Mm2 SINE B2 -14 181 2 8 1492 262 0 53 0 chr5 118884473 118884511 -33652748 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 8 1492 425 227 0 22 chr5 118884710 118884800 -33652459 + PB1D10 SINE Alu 27 114 -3 8 1492 242 262 122 24 chr5 118884799 118884881 -33652378 + PB1D10 SINE Alu 1 90 -27 8 1492 224 264 309 0 chr5 118884931 118885041 -33652218 + ID_B1 SINE B4 81 224 0 8 1492 441 0 0 0 chr5 118885930 118885979 -33651280 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1492 2051 162 42 22 chr5 118886147 118886552 -33650707 - MTC LTR MaLR -8 413 1 8 1492 231 244 67 79 chr5 118887096 118887185 -33650074 - MIRm SINE MIR -102 174 87 8 1492 724 135 308 12 chr5 118887681 118887853 -33649406 - URR1B DNA MER1_type -2 223 1 8 1492 264 296 0 0 chr5 118888173 118888244 -33649015 + MARNA DNA Mariner 287 357 -229 8 1492 319 282 7 82 chr5 118888533 118888571 -33648688 + MT2B LTR ERVL 133 160 -441 8 1492 794 147 47 0 chr5 118888571 118888711 -33648548 + B1_Mur4 SINE Alu 2 148 -2 8 1492 373 266 56 179 chr5 118888711 118888803 -33648456 + B4 SINE B4 87 289 -3 8 1492 270 265 136 10 chr5 118888870 118888973 -33648286 + MLT1A0 LTR MaLR 219 334 -31 8 1492 282 29 0 0 chr5 118888975 118889010 -33648249 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 8 1492 207 0 0 0 chr5 118889032 118889055 -33648204 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1492 224 131 0 21 chr5 118889061 118889108 -33648151 + CT-rich Low_complexity Low_complexity 2 47 0 8 1492 373 281 222 18 chr5 118889348 118889569 -33647690 + RMER15 LTR ERVL 296 561 -14 8 1492 406 214 27 64 chr5 118889584 118889694 -33647565 + MER58A DNA MER1_type 49 154 -70 8 1492 1024 236 140 70 chr5 118889673 118890015 -33647244 - MTE2b LTR MaLR -13 366 1 8 1492 339 340 92 47 chr5 118890236 118890417 -33646842 + MLT1D LTR MaLR 40 340 -165 8 1492 909 99 152 0 chr5 118890417 118890568 -33646691 + MT2B LTR ERVL 75 248 -353 8 1492 339 340 92 47 chr5 118890568 118890638 -33646621 + MLT1D LTR MaLR 341 459 -46 8 1492 300 292 94 34 chr5 118890687 118890804 -33646455 + MLT1N2 LTR MaLR 111 234 -328 8 1492 1821 149 12 30 chr5 118890950 118891304 -33645955 + ORR1A2 LTR MaLR 47 394 0 8 1492 2434 49 16 22 chr5 118891306 118891621 -33645638 - ORR1A2 LTR MaLR -14 313 1 8 1492 701 281 23 0 chr5 118891682 118891853 -33645406 - B3A SINE B2 -20 178 4 8 1492 426 209 142 37 chr5 118891869 118892003 -33645256 - ID_B1 SINE B4 -19 205 58 8 1492 258 358 33 16 chr5 118892095 118892217 -33645042 + MER63A DNA AcHobo 39 162 -48 8 1492 352 202 54 43 chr5 118892459 118892550 -33644709 + ID_B1 SINE B4 5 96 -128 8 1492 856 247 89 39 chr5 118892550 118892832 -33644427 - MTE2a LTR MaLR 0 379 84 9 1492 279 125 0 0 chr5 118892832 118892872 -33644387 + B3 SINE B2 2 41 -175 9 1492 1187 75 0 13 chr5 118892872 118893021 -33644238 + B1_Mm SINE Alu 1 147 0 9 1492 203 61 30 0 chr5 118893021 118893054 -33644205 + (CAAAA)n Simple_repeat Simple_repeat 4 37 0 9 1492 1635 47 0 0 chr5 118893057 118893250 -33644009 + B2_Mm1t SINE B2 1 193 0 9 1492 1150 60 0 13 chr5 118893257 118893409 -33643850 + B2_Mm2 SINE B2 27 176 -19 9 1492 351 267 51 17 chr5 118893411 118893529 -33643730 - MTE2a LTR MaLR -295 124 3 9 1492 621 184 0 50 chr5 118893531 118893651 -33643608 + ID_B1 SINE B4 95 208 -16 8 1492 257 150 180 16 chr5 118894050 118894111 -33643148 + B1F SINE Alu 79 149 0 9 1492 1036 53 0 8 chr5 118894250 118894382 -33642877 + B1_Mus1 SINE Alu 18 148 0 9 1492 213 161 48 12 chr5 118894393 118894459 -33642800 - MIRc SINE MIR -77 185 115 9 1492 204 245 20 0 chr5 118895778 118895827 -33641432 + GA-rich Low_complexity Low_complexity 5 54 0 9 1492 448 299 0 0 chr5 118895989 118896096 -33641163 - PB1D10 SINE Alu -6 111 5 9 1492 901 227 6 6 chr5 118896243 118896420 -33640839 - ID_B1 SINE B4 -12 212 36 9 1492 187 302 19 0 chr5 118897049 118897102 -33640157 - L2b LINE L2 -63 3312 3259 9 1492 459 233 29 0 chr5 118897199 118897302 -33639957 - B1F SINE Alu -13 136 31 9 1492 267 355 57 57 chr5 118897435 118897629 -33639630 + MLT1A1 LTR MaLR 5 198 -210 9 1492 180 0 0 0 chr5 118898103 118898123 -33639136 + (TTG)n Simple_repeat Simple_repeat 2 21 0 9 1492 625 269 78 48 chr5 118898211 118898480 -33638779 + B4 SINE B4 2 278 -14 9 1492 414 154 0 0 chr5 118898509 118898587 -33638672 + (CA)n Simple_repeat Simple_repeat 2 79 0 9 1492 213 39 0 0 chr5 118898594 118898620 -33638639 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 9 1492 335 182 767 29 chr5 118899077 118899193 -33638066 + ID_B1 SINE B4 5 206 -18 9 1492 477 0 0 0 chr5 118899210 118899263 -33637996 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1492 246 250 16 0 chr5 118899263 118899327 -33637932 - ID4 SINE ID -14 69 5 9 1492 423 242 0 0 chr5 118899360 118899451 -33637808 + MLT2C1 LTR ERVL 6 96 -301 9 1492 243 320 0 0 chr5 118899399 118899454 -33637805 + MLT1E3 LTR MaLR 66 120 -504 9 1492 218 350 50 0 chr5 118899454 118899514 -33637745 + ID4 SINE ID 1 63 -20 9 1492 410 248 60 26 chr5 118899727 118899843 -33637416 + PB1D7 SINE Alu 1 120 0 9 1492 342 0 0 0 chr5 118899869 118899907 -33637352 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1492 213 65 0 0 chr5 118899913 118899944 -33637315 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 9 1492 995 195 38 19 chr5 118899981 118900190 -33637069 - B3 SINE B2 -1 215 3 9 1492 31 44 0 0 chr5 118900192 118900237 -33637022 + AT_rich Low_complexity Low_complexity 1 45 0 9 1492 316 271 14 0 chr5 118900281 118900351 -33636908 - HAL1-3A_ME LINE L1 -830 2028 1958 9 1492 641 172 21 4 chr5 118900351 118900585 -33636674 + (TCTA)n Simple_repeat Simple_repeat 1 238 0 9 1492 423 0 0 0 chr5 118900701 118900748 -33636511 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 9 1492 277 292 132 0 chr5 118900766 118900787 -33636472 + RSINE1 SINE B4 6 29 -136 9 1492 3505 28 2 2 chr5 118900787 118901183 -33636076 + MTA_Mm LTR MaLR 1 396 0 9 1492 277 292 132 0 chr5 118901183 118901267 -33635992 + RSINE1 SINE B4 30 124 -41 9 1492 698 321 29 18 chr5 118901432 118901705 -33635554 + B4A SINE B4 2 277 -15 9 1492 417 188 59 0 chr5 118901865 118901950 -33635309 + L2b LINE L2 3285 3374 -1 9 1492 1932 86 11 4 chr5 118902659 118902929 -33634330 + L1_Mus3 LINE L1 6365 6636 -2 9 1492 486 277 157 6 chr5 118903148 118903326 -33633933 - ID_B1 SINE B4 0 224 20 9 1492 275 296 62 36 chr5 118903293 118903405 -33633854 - PB1D9 SINE Alu -1 119 5 9 1492 312 27 0 0 chr5 118903423 118903460 -33633799 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1492 409 258 139 28 chr5 118903619 118903786 -33633473 - B3 SINE B2 -17 178 1 9 1492 265 193 65 43 chr5 118903810 118903902 -33633357 + L1M4 LINE L1 1124 1217 -5325 9 1492 520 294 45 34 chr5 118903981 118904157 -33633102 - B3A SINE B2 -19 179 2 9 1492 408 324 0 92 chr5 118904326 118904479 -33632780 + RSINE1 SINE B4 12 150 -15 9 1492 182 244 0 0 chr5 118904990 118905031 -33632228 + MIRb SINE MIR 55 95 -173 9 1492 266 0 0 29 chr5 118905140 118905175 -33632084 + (TTA)n Simple_repeat Simple_repeat 2 35 0 9 1492 182 37 37 0 chr5 118905282 118905309 -33631950 + (GA)n Simple_repeat Simple_repeat 2 29 0 9 1492 396 0 0 0 chr5 118906304 118906348 -33630911 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 9 1492 1317 38 6 0 chr5 118906348 118906508 -33630751 - B2_Mm2 SINE B2 -34 161 1 9 1492 363 335 92 87 chr5 118906598 118906944 -33630315 - ORR1E LTR MaLR -11 348 1 9 1492 711 186 314 0 chr5 118907032 118907204 -33630055 + URR1A DNA MER1_type 1 226 0 9 1492 910 137 0 14 chr5 118907392 118907533 -33629726 + B1_Mur4 SINE Alu 11 149 -1 9 1492 715 257 14 0 chr5 118907570 118907710 -33629549 + RSINE1 SINE B4 3 144 -21 9 1492 548 193 213 32 chr5 118907768 118907923 -33629336 + ID_B1 SINE B4 16 198 -26 9 1492 270 125 0 0 chr5 118908114 118908162 -33629097 + (T)n Simple_repeat Simple_repeat 1 48 0 9 1492 1193 55 0 14 chr5 118908163 118908311 -33628948 - B1_Mus1 SINE Alu -1 147 2 9 1492 352 312 0 20 chr5 118908320 118908418 -33628841 - PB1D10 SINE Alu -1 116 21 9 1492 489 238 0 54 chr5 118908417 118908528 -33628731 + B1F1 SINE Alu 23 127 -22 9 1492 785 71 53 6 chr5 118908583 118908753 -33628506 + (TAGA)n Simple_repeat Simple_repeat 2 179 0 9 1492 263 269 25 51 chr5 118909268 118909464 -33627795 + RMER17C LTR ERVK 54 244 -166 9 1492 775 197 0 7 chr5 118909971 118910119 -33627140 + B1_Mus2 SINE Alu 1 147 0 9 1492 717 264 67 10 chr5 118910548 118910743 -33626516 - B3 SINE B2 -9 207 2 9 1492 189 0 0 0 chr5 118910949 118910970 -33626289 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 1492 362 299 11 30 chr5 118910986 118911132 -33626127 - B4A SINE B4 -41 251 108 9 1492 239 356 0 0 chr5 118911172 118911259 -33626000 + (TG)n Simple_repeat Simple_repeat 2 88 0 9 1492 328 197 16 0 chr5 118911260 118911321 -33625938 - HAL1-3A_ME LINE L1 -829 2029 1968 9 1492 263 288 13 40 chr5 118912122 118912198 -33625061 + MIRc SINE MIR 76 149 -119 9 1492 271 246 0 16 chr5 118912205 118912267 -33624992 + ID SINE ID 2 62 -162 9 1492 266 241 121 44 chr5 118912267 118912296 -33624963 + BC1_Mm scRNA scRNA 2 99 -53 9 1492 329 379 72 0 chr5 118912337 118912490 -33624769 - MER63B DNA AcHobo 0 436 273 9 1492 333 0 0 0 chr5 118912588 118912625 -33624634 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1492 315 0 0 0 chr5 118912634 118912669 -33624590 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1492 841 175 14 7 chr5 118912669 118912805 -33624454 - B1_Mur3 SINE Alu -11 138 1 9 1492 245 210 16 0 chr5 118913363 118913425 -33623834 + GA-rich Low_complexity Low_complexity 3 65 0 9 1492 611 189 35 42 chr5 118913481 118913625 -33623634 + B1_Mur1 SINE Alu 2 144 -5 9 1492 294 188 202 45 chr5 118913659 118913748 -33623511 + ORR1E LTR MaLR 6 138 -221 9 1492 468 198 20 40 chr5 118914799 118914899 -33622360 + B1F SINE Alu 1 98 -51 9 1492 210 37 0 0 chr5 118915447 118915474 -33621785 + (TG)n Simple_repeat Simple_repeat 1 27 0 9 1492 186 319 51 34 chr5 118916392 118916509 -33620750 + MIRb SINE MIR 24 142 -126 9 1492 621 236 134 0 chr5 118916517 118916674 -33620585 - MER58A DNA MER1_type -3 221 44 9 1492 384 269 87 28 chr5 118916903 118917051 -33620208 - MLT1A1 LTR MaLR -1 407 268 9 1492 276 217 0 0 chr5 118917199 118917291 -33619968 + (TG)n Simple_repeat Simple_repeat 1 92 0 9 1492 839 251 28 11 chr5 118917293 118917474 -33619785 - B4 SINE B4 0 292 109 9 1492 584 194 5 2 chr5 118917479 118917892 -33619367 + (CA)n Simple_repeat Simple_repeat 1 414 0 9 1492 326 303 18 18 chr5 118917892 118918003 -33619256 - B4 SINE B4 -181 111 1 9 1492 264 224 27 82 chr5 118918012 118918085 -33619174 - MLT1A1 LTR MaLR -316 92 24 9 1492 270 310 0 12 chr5 118918493 118918578 -33618681 - MIRc SINE MIR -120 148 65 9 1492 336 298 8 34 chr5 118918699 118918817 -33618442 - MLT1A1 LTR MaLR -3 405 291 9 1492 250 171 0 64 chr5 118918857 118918951 -33618308 + CT-rich Low_complexity Low_complexity 1 88 0 9 1492 285 141 0 40 chr5 118919012 118919086 -33618173 + CT-rich Low_complexity Low_complexity 2 72 0 9 1492 483 231 0 0 chr5 118919089 118919180 -33618079 - PB1D10 SINE Alu -14 103 13 9 1492 286 247 24 61 chr5 118919230 118919312 -33617947 - MLT1A1 LTR MaLR -242 132 54 9 1492 243 290 0 42 chr5 118919423 118919495 -33617764 + RMER30 DNA MER1_type 133 201 -1 9 1492 285 151 0 0 chr5 118919830 118919883 -33617376 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1492 224 0 0 61 chr5 118920186 118920219 -33617040 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 9 1492 1255 27 7 0 chr5 118920219 118920365 -33616894 - B1_Mm SINE Alu 0 147 1 9 1492 649 256 152 30 chr5 118920537 118920868 -33616391 + MTEb LTR MaLR 1 372 -7 9 1492 759 173 3 0 chr5 118921181 118921575 -33615684 + (TG)n Simple_repeat Simple_repeat 1 395 0 9 1492 225 0 0 0 chr5 118922209 118922234 -33615025 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 9 1492 924 18 0 17 chr5 118922239 118922355 -33614904 - B1_Mus2 SINE Alu -1 146 33 9 1492 892 161 28 0 chr5 118922357 118922500 -33614759 - B1_Mur2 SINE Alu -1 148 2 9 1492 252 306 0 16 chr5 118922502 118922565 -33614694 - PB1D10 SINE Alu -35 82 21 9 1492 548 257 56 14 chr5 118922677 118922819 -33614440 + B1F SINE Alu 2 149 0 9 1492 243 0 0 0 chr5 118923354 118923381 -33613878 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1492 195 146 0 0 chr5 118923986 118924027 -33613232 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1 1492 1224 61 7 0 chr5 118924032 118924179 -33613080 - B1_Mus1 SINE Alu 0 148 1 1 1492 219 299 81 0 chr5 118924293 118924380 -33612879 + MIR SINE MIR 41 134 -74 1 1492 1060 190 53 14 chr5 118925451 118925659 -33611600 + ID_B1 SINE B4 1 216 -8 1 1492 234 237 14 29 chr5 118927125 118927194 -33610065 - MIR SINE MIR -98 164 98 1 1492 248 365 80 13 chr5 118927435 118927585 -33609674 - MLT1K LTR MaLR -30 565 406 1 1492 266 322 208 32 chr5 118927955 118927972 -33609287 + ID_B1 SINE B4 73 219 -5 1 1492 501 278 0 0 chr5 118927972 118928080 -33609179 + PB1D9 SINE Alu 8 115 -5 1 1492 21 36 0 0 chr5 118928080 118928108 -33609151 + AT_rich Low_complexity Low_complexity 1 28 0 1 1492 194 0 39 0 chr5 118928553 118928579 -33608680 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1492 408 40 0 0 chr5 118928827 118928877 -33608382 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1 1492 530 214 73 57 chr5 118929001 118929125 -33608134 + B1_Mur1 SINE Alu 3 128 -21 1 1492 1655 138 10 21 chr5 118929157 118929446 -33607813 + Lx2 LINE L1 6712 6997 0 1 1492 1320 14 0 0 chr5 118929454 118929601 -33607658 + B1_Mm SINE Alu 1 147 0 1 1492 198 0 0 0 chr5 118929601 118929623 -33607636 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1492 402 294 20 0 chr5 118929723 118929825 -33607434 - PB1D10 SINE Alu -13 104 1 1 1492 1047 85 43 0 chr5 118929841 118929982 -33607277 - B1_Mus2 SINE Alu 0 147 1 1 1492 294 339 28 139 chr5 118930319 118930535 -33606724 + MLT2B1 LTR ERVL 319 510 -57 1 1492 918 152 203 0 chr5 118930536 118930713 -33606546 + B3 SINE B2 3 215 -1 1 1492 576 215 97 0 chr5 118930782 118930926 -33606333 - B3 SINE B2 -30 186 29 1 1492 1561 176 21 100 chr5 118930928 118931277 -33605982 - RMER17C LTR ERVK 0 410 95 1 1492 1159 23 0 0 chr5 118931277 118931406 -33605853 + B1_Mus1 SINE Alu 2 130 -18 1 1492 1561 189 17 101 chr5 118931406 118931534 -33605725 - RMER17C LTR ERVK -316 94 16 1 1492 275 233 50 91 chr5 118931655 118931754 -33605505 + MT2B LTR ERVL 163 257 -344 1 1492 749 157 0 8 chr5 118931676 118931798 -33605461 + B1_Mur4 SINE Alu 29 149 -1 1 1492 270 0 0 0 chr5 118931800 118931830 -33605429 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1492 412 274 28 9 chr5 118931835 118931942 -33605317 + PB1D10 SINE Alu 1 109 -8 1 1492 651 253 58 0 chr5 118932072 118932226 -33605033 - RSINE1 SINE B4 0 165 3 1 1492 662 206 131 0 chr5 118932226 118932386 -33604873 + Tigger7 DNA MER2_type 2302 2482 -9 1 1492 1257 154 18 22 chr5 118932441 118932667 -33604592 - URR1B DNA MER1_type 0 225 1 1 1492 210 277 157 0 chr5 118933474 118933557 -33603702 - B1F1 SINE Alu -51 98 3 1 1492 756 274 66 19 chr5 118934147 118934359 -33602900 + ID_B1 SINE B4 1 222 -2 1 1492 223 355 135 49 chr5 118934390 118934553 -33602706 + L2b LINE L2 3193 3369 -6 1 1492 189 74 0 0 chr5 118935058 118935085 -33602174 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1 1492 1366 92 16 5 chr5 118935880 118936066 -33601193 + B2_Mm2 SINE B2 1 188 -7 1 1492 1504 196 149 14 chr5 118936098 118936460 -33600799 + MTD LTR MaLR 6 416 -3 1 1492 276 30 0 0 chr5 118937203 118937236 -33600023 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1492 345 24 0 0 chr5 118937690 118937732 -33599527 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1492 624 14 0 0 chr5 118937732 118937804 -33599455 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1492 473 0 18 0 chr5 118937948 118938005 -33599254 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1 1492 420 20 0 0 chr5 118938005 118938054 -33599205 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1492 346 281 60 0 chr5 118938139 118938264 -33598995 - B1F SINE Alu -8 141 1 1 1492 767 205 20 20 chr5 118938522 118938671 -33598588 + B1F SINE Alu 1 149 0 1 1492 332 308 47 28 chr5 118938676 118938783 -33598476 + PB1D10 SINE Alu 1 109 -8 1 1492 579 239 0 17 chr5 118939688 118939807 -33597452 - PB1D10 SINE Alu 0 117 1 1 1492 764 173 23 8 chr5 118939928 118940056 -33597203 + B1_Mur1 SINE Alu 2 131 -18 1 1492 1139 77 135 12 chr5 118940126 118940296 -33596963 - B2_Mm1t SINE B2 -2 191 1 1 1492 495 245 9 45 chr5 118940388 118940499 -33596760 + PB1D10 SINE Alu 1 107 -10 1 1492 483 18 0 0 chr5 118940746 118940802 -33596457 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1492 760 87 16 0 chr5 118940802 118940928 -33596331 + (GA)n Simple_repeat Simple_repeat 1 129 0 1 1492 276 261 0 0 chr5 118940936 118941001 -33596258 - ID4_ SINE ID -17 66 2 1 1492 22 35 0 0 chr5 118941174 118941203 -33596056 + GC_rich Low_complexity Low_complexity 1 29 0 1 1492 255 227 0 96 chr5 118941264 118941347 -33595912 - MER58C DNA MER1_type -93 122 48 1 1492 354 80 0 0 chr5 118941421 118941471 -33595788 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 1 1492 213 221 0 0 chr5 118941476 118941544 -33595715 + GA-rich Low_complexity Low_complexity 1 68 0 1 1492 208 91 61 0 chr5 118941547 118941580 -33595679 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 1 1492 436 229 147 0 chr5 118941581 118941690 -33595569 - B3A SINE B2 -36 162 38 1 1492 1984 86 60 46 chr5 118942469 118942873 -33594386 - ORR1A2 LTR MaLR 0 346 2 1 1492 305 254 140 43 chr5 118942873 118942997 -33594262 - MTEb LTR MaLR -21 358 219 1 1492 630 122 0 0 chr5 118943414 118943512 -33593747 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1492 207 0 0 0 chr5 118943613 118943636 -33593623 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1 1492 406 270 232 46 chr5 118943685 118943926 -33593333 - B4 SINE B4 -6 286 1 1 1492 1042 63 8 2 chr5 118943944 118944094 -33593165 - B1_Mus2 SINE Alu -1 149 1 1 1492 536 366 6 0 chr5 118944491 118944652 -33592607 - RSINE1 SINE B4 -2 163 2 1 1492 414 365 44 29 chr5 118944728 118945002 -33592257 - Charlie20a DNA Charlie -479 328 51 1 1492 276 206 134 45 chr5 118945649 118945739 -33591520 - PB1D10 SINE Alu -6 111 14 1 1492 921 181 0 0 chr5 118945775 118945952 -33591307 + CT-rich Low_complexity Low_complexity 1 177 0 1 1492 291 257 237 9 chr5 118945980 118946094 -33591165 - MLT1K LTR MaLR -160 435 296 1 1492 258 32 0 0 chr5 118946100 118946131 -33591128 + (TC)n Simple_repeat Simple_repeat 1 31 0 1 1492 207 248 148 65 chr5 118946232 118946340 -33590919 - MIRm SINE MIR -92 184 68 1 1492 376 250 31 141 chr5 118946437 118946628 -33590631 - B4A SINE B4 0 292 123 1 1492 630 253 165 19 chr5 118947003 118947210 -33590049 + ID_B1 SINE B4 1 239 -53 1 1492 712 248 142 4 chr5 118947425 118947692 -33589567 + Lx8 LINE L1 6894 7197 -276 1 1492 267 274 192 0 chr5 118948294 118948367 -33588892 - PB1D10 SINE Alu -28 89 3 1 1492 1214 97 47 31 chr5 118948388 118948579 -33588680 - B2_Mm2 SINE B2 -1 194 1 1 1492 379 286 28 19 chr5 118948809 118948916 -33588343 + RSINE1 SINE B4 45 152 -13 1 1492 360 0 0 0 chr5 118948918 118948958 -33588301 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1492 23 0 0 0 chr5 118948971 118948994 -33588265 + AT_rich Low_complexity Low_complexity 1 23 0 1 1492 364 212 56 75 chr5 118949196 118949303 -33587956 + L1MCa LINE L1 1855 1959 -4549 1 1492 243 0 0 0 chr5 118949303 118949330 -33587929 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1492 351 0 0 0 chr5 118949330 118949369 -33587890 + (TA)n Simple_repeat Simple_repeat 1 39 0 1 1492 356 276 40 109 chr5 118949510 118949685 -33587574 - RSINE1 SINE B4 0 165 3 1 1492 525 320 33 73 chr5 118949734 118950037 -33587222 - B4A SINE B4 0 292 2 1 1492 1677 10 0 25 chr5 118950655 118950853 -33586406 - B2_Mm1a SINE B2 0 193 1 1 1492 293 406 74 55 chr5 118950895 118951166 -33586093 + MLT1K LTR MaLR 24 299 -296 1 1492 417 204 58 48 chr5 118951363 118951466 -33585793 - B3A SINE B2 -93 105 2 1 1492 704 262 58 5 chr5 118951492 118951680 -33585579 - B3A SINE B2 0 198 1 1 1492 213 121 0 0 chr5 118952305 118952338 -33584921 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1492 515 307 141 27 chr5 118952366 118952550 -33584709 + ID_B1 SINE B4 8 212 -12 1 1492 198 0 0 0 chr5 118953452 118953474 -33583785 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 1 1492 317 194 196 39 chr5 118953617 118953719 -33583540 + MIR SINE MIR 47 164 -98 1 1492 1072 235 0 9 chr5 118953792 118954007 -33583252 - B3 SINE B2 -3 213 1 1 1492 183 190 123 42 chr5 118954295 118954378 -33582881 + MIR SINE MIR 94 181 -87 1 1492 396 318 200 7 chr5 118955749 118955904 -33581355 + ID_B1 SINE B4 3 187 -37 1 1492 1015 134 0 0 chr5 118955906 118956048 -33581211 + B1_Mus1 SINE Alu 1 142 -6 1 1492 22 56 0 0 chr5 118956151 118956187 -33581072 + AT_rich Low_complexity Low_complexity 1 36 0 1 1492 398 284 25 49 chr5 118956202 118956288 -33580971 + RSINE1 SINE B4 37 124 -41 1 1492 360 0 0 0 chr5 118956288 118956328 -33580931 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1492 398 284 25 49 chr5 118956328 118956363 -33580896 + RSINE1 SINE B4 125 155 -10 1 1492 253 315 27 0 chr5 118956372 118956445 -33580814 + ID_B1 SINE B4 130 204 -20 1 1492 315 104 0 0 chr5 118956461 118956509 -33580750 + (TGAA)n Simple_repeat Simple_repeat 4 51 0 1 1492 1216 174 5 10 chr5 118956585 118956794 -33580465 - B3 SINE B2 0 216 9 1 1492 459 0 0 0 chr5 118956823 118956874 -33580385 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1492 468 0 0 0 chr5 118956874 118956925 -33580334 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1492 269 89 0 22 chr5 118957321 118957367 -33579892 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1492 326 93 18 36 chr5 118957647 118957703 -33579556 - HAL1-3A_ME LINE L1 -828 2030 1976 1 1492 220 246 17 17 chr5 118957704 118957820 -33579439 + (TATG)n Simple_repeat Simple_repeat 1 116 0 1 1492 505 290 82 36 chr5 118957856 118958046 -33579213 - B4A SINE B4 -8 284 79 1 1492 483 278 119 19 chr5 118958268 118958455 -33578804 + ID_B1 SINE B4 18 224 0 1 1492 1951 179 45 38 chr5 118958394 118958762 -33578497 - RMER6B LTR ERVK -33 428 57 1 1492 189 0 0 0 chr5 118958762 118958783 -33578476 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1 1492 1951 179 45 38 chr5 118958783 118958839 -33578420 - RMER6B LTR ERVK -405 56 1 1 1492 514 203 16 0 chr5 118958874 118959002 -33578257 + GA-rich Low_complexity Low_complexity 2 131 0 1 1492 303 110 36 12 chr5 118959028 118959094 -33578165 + B1_Mus2 SINE Alu 48 144 -3 1 1492 1052 91 0 7 chr5 118959094 118959249 -33578010 + (GAA)n Simple_repeat Simple_repeat 2 155 0 1 1492 679 231 13 26 chr5 118959439 118959590 -33577669 - B1_Mur1 SINE Alu 0 149 1 1 1492 767 274 59 9 chr5 118959590 118959805 -33577454 - B4A SINE B4 -61 231 6 1 1492 227 245 20 0 chr5 118960038 118960087 -33577172 - MLT1A1 LTR MaLR -283 125 76 1 1492 219 391 0 73 chr5 118960046 118960170 -33577089 + ID_B1 SINE B4 47 161 -63 1 1492 408 40 0 0 chr5 118960394 118960444 -33576815 + (TGG)n Simple_repeat Simple_repeat 3 52 0 1 1492 21 71 0 0 chr5 118960505 118960547 -33576712 + AT_rich Low_complexity Low_complexity 1 42 0 1 1492 966 221 55 0 chr5 118961079 118961278 -33575981 - ID_B1 SINE B4 -13 211 2 1 1492 347 205 24 24 chr5 118961357 118961442 -33575817 + MER20 DNA MER1_type 1 85 -134 1 1492 467 277 15 30 chr5 118961712 118961846 -33575413 + MER5A1 DNA MER1_type 29 160 -6 1 1492 185 0 0 39 chr5 118961924 118961950 -33575309 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 1 1492 260 252 145 17 chr5 118961950 118962067 -33575192 - L2c LINE L2 -227 3160 3029 1 1492 958 268 50 7 chr5 118962067 118962345 -33574914 + B4 SINE B4 3 292 0 1 1492 399 238 6 11 chr5 118962374 118962548 -33574711 + (CATA)n Simple_repeat Simple_repeat 2 174 0 1 1492 283 280 4 4 chr5 118962610 118962883 -33574376 + (CA)n Simple_repeat Simple_repeat 1 273 0 1 1492 25 0 0 0 chr5 118963594 118963619 -33573640 + GC_rich Low_complexity Low_complexity 1 25 0 1 1492 258 284 0 110 chr5 118965114 118965205 -33572054 + ID4 SINE ID 3 83 0 1 1492 261 22 21 42 chr5 118965206 118965254 -33572005 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1492 218 32 32 0 chr5 118966015 118966046 -33571213 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1492 289 288 197 7 chr5 118966118 118966265 -33570994 - B4 SINE B4 -5 287 113 1 1492 406 212 71 74 chr5 118966174 118966290 -33570969 - PB1D9 SINE Alu -26 123 10 1 1492 749 241 108 24 chr5 118966296 118966508 -33570751 - B4A SINE B4 -62 230 1 1 1492 197 269 47 70 chr5 118966686 118966814 -33570445 - L2 LINE L2 -3075 344 220 1 1492 232 328 30 46 chr5 118966757 118966887 -33570372 - MIR3 SINE MIR -29 179 56 1 1492 384 345 65 76 chr5 118966989 118967462 -33569797 - MLT1D LTR MaLR 0 505 38 1 1492 676 207 0 133 chr5 118967443 118967616 -33569643 + RSINE1 SINE B4 16 165 0 1 1492 448 59 29 0 chr5 118968259 118968327 -33568932 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1492 196 102 0 39 chr5 118968530 118968581 -33568678 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1492 350 304 22 87 chr5 118969188 118969224 -33568035 + ID SINE ID 49 72 -152 1 1492 631 180 42 36 chr5 118969224 118969377 -33567882 + B1_Mur1 SINE Alu 4 149 0 1 1492 258 105 0 0 chr5 118969537 118969575 -33567684 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 1 1492 2217 131 19 3 chr5 118969576 118969898 -33567361 - ORR1A2 LTR MaLR 0 327 1 1 1492 418 173 0 19 chr5 118969898 118970004 -33567255 + (TGGA)n Simple_repeat Simple_repeat 3 106 0 1 1492 3599 15 2 0 chr5 118970065 118970460 -33566799 + MTA_Mm LTR MaLR 1 396 0 1 1492 462 208 155 31 chr5 118971010 118971139 -33566120 + B1F SINE Alu 1 145 -4 1 1492 377 268 0 18 chr5 118971234 118971348 -33565911 + L1M4 LINE L1 5698 5809 -369 1 1492 610 198 0 9 chr5 118971357 118971464 -33565795 + B1_Mur1 SINE Alu 6 111 -38 1 1492 275 319 0 32 chr5 118971656 118971750 -33565509 + RSINE1 SINE B4 2 92 -73 1 1492 566 257 76 0 chr5 118971763 118971907 -33565352 + B4A SINE B4 9 163 -129 1 1492 451 192 0 0 chr5 118971988 118972066 -33565193 - B3A SINE B2 -120 78 1 1 1492 498 231 19 0 chr5 118972239 118972343 -33564916 + PB1D10 SINE Alu 5 110 -7 1 1492 743 252 68 19 chr5 118972439 118972645 -33564614 + B3 SINE B2 1 216 0 1 1492 761 189 0 22 chr5 118972709 118972844 -33564415 - B3A SINE B2 -66 132 1 1 1492 648 22 33 0 chr5 118972896 118972986 -33564273 + (TTC)n Simple_repeat Simple_repeat 3 95 0 1 1492 656 291 83 13 chr5 118972997 118973227 -33564032 - B4A SINE B4 -46 246 1 1 1492 361 250 73 0 chr5 118973428 118973524 -33563735 - MIR SINE MIR -104 158 56 1 1492 233 329 14 0 chr5 118973553 118973626 -33563633 + MLT1L LTR MaLR 437 510 -100 1 1492 1121 23 38 0 chr5 118973667 118973798 -33563461 + B1_Mus1 SINE Alu 2 137 -11 1 1492 414 0 0 0 chr5 118973798 118973844 -33563415 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 1 1492 183 42 0 0 chr5 118973884 118973908 -33563351 + (TCTG)n Simple_repeat Simple_repeat 1 24 0 1 1492 339 308 56 118 chr5 118974214 118974239 -33563020 + B4 SINE B4 70 153 -139 1 1492 906 146 0 14 chr5 118974239 118974378 -33562881 + B1_Mus2 SINE Alu 11 147 0 1 1492 339 308 56 118 chr5 118974378 118974404 -33562855 + B4 SINE B4 154 249 -43 1 1492 417 20 0 0 chr5 118974787 118974837 -33562422 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1492 285 296 92 0 chr5 118975090 118975188 -33562071 + B3A SINE B2 86 192 -6 1 1492 694 223 0 0 chr5 118975194 118975324 -33561935 + B1_Mur1 SINE Alu 1 130 -19 1 1492 180 0 0 0 chr5 118975331 118975351 -33561908 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 1 1492 494 243 0 35 chr5 118975549 118975664 -33561595 - ID_B1 SINE B4 -102 122 12 1 1492 839 223 60 5 chr5 118976278 118976463 -33560796 - ID_B1 SINE B4 -5 219 25 1 1492 650 257 55 15 chr5 118977079 118977391 -33559868 - MTEb LTR MaLR 0 379 14 1 1492 1034 77 27 40 chr5 118977415 118977563 -33559696 + B1_Mus2 SINE Alu 2 147 0 1 1492 180 0 0 0 chr5 118977573 118977593 -33559666 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1492 996 91 150 18 chr5 118977913 118978080 -33559179 + B2_Mm2 SINE B2 1 189 -6 1 1492 946 209 78 0 chr5 118978085 118978276 -33558983 - ID_B1 SINE B4 -18 206 1 1 1492 605 246 65 0 chr5 118978320 118978458 -33558801 + B1_Mur2 SINE Alu 2 148 -1 1 1492 372 268 68 118 chr5 118978581 118978742 -33558517 - RSINE1 SINE B4 -12 153 1 1 1492 461 248 113 0 chr5 118978882 118979015 -33558244 + ID_B1 SINE B4 1 148 -76 1 1492 192 328 16 16 chr5 118979336 118979398 -33557861 + MIRb SINE MIR 199 260 -8 1 1492 292 294 108 31 chr5 118979828 118979958 -33557301 + B1_Mur1 SINE Alu 1 140 -9 1 1492 207 0 0 0 chr5 118979964 118979987 -33557272 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1492 233 233 108 14 chr5 118980025 118980099 -33557160 + ID4_ SINE ID 1 81 -2 1 1492 238 353 67 29 chr5 118980340 118980445 -33556814 + ID_B1 SINE B4 7 115 -109 1 1492 250 349 32 31 chr5 118980490 118980639 -33556620 - MIRc SINE MIR -79 189 36 1 1492 666 217 0 23 chr5 118980642 118980774 -33556485 - B1F SINE Alu -20 129 1 1 1492 248 238 47 16 chr5 118981116 118981180 -33556079 + B3A SINE B2 127 192 -6 1 1492 543 281 54 40 chr5 118981182 118981460 -33555799 + Lx8 LINE L1 7051 7332 -141 1 1492 198 0 0 0 chr5 118981466 118981488 -33555771 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1 1492 707 221 0 0 chr5 118981495 118981617 -33555642 + B1_Mur1 SINE Alu 6 127 -22 1 1492 292 89 35 18 chr5 118981625 118981682 -33555577 + (CCAA)n Simple_repeat Simple_repeat 2 59 0 1 1492 200 249 44 86 chr5 118981858 118981985 -33555274 - MIRc SINE MIR 0 262 89 1 1492 26 0 0 0 chr5 118982696 118982722 -33554537 + GC_rich Low_complexity Low_complexity 1 26 0 1 1492 261 57 0 0 chr5 118983033 118983068 -33554191 + (TGGGGG)n Simple_repeat Simple_repeat 5 39 0 1 1492 368 314 25 14 chr5 118983194 118983355 -33553904 - MIR SINE MIR -62 206 39 1 1492 866 273 14 24 chr5 118983657 118983867 -33553392 + ID_B1 SINE B4 1 208 -16 1 1492 258 136 0 0 chr5 118983871 118983915 -33553344 + (GGGAGA)n Simple_repeat Simple_repeat 1 44 0 1 1492 403 222 44 0 chr5 118983940 118984030 -33553229 + PB1D10 SINE Alu 24 117 0 1 1492 228 67 0 0 chr5 118984036 118984066 -33553193 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1492 269 259 22 45 chr5 118985897 118985986 -33551273 + RSINE1 SINE B4 28 114 -51 1 1492 859 211 77 5 chr5 118985986 118986181 -33551078 + B3 SINE B2 1 209 -7 1 1492 454 172 195 0 chr5 118986202 118986285 -33550974 + B1_Mm SINE Alu 2 101 -46 1 1492 720 44 0 62 chr5 118986285 118986382 -33550877 + B2_Mm2 SINE B2 2 92 -103 1 1492 362 167 0 57 chr5 118986372 118986442 -33550817 + B1_Mm SINE Alu 81 146 -1 1 1492 230 29 59 0 chr5 118986445 118986479 -33550780 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1 1492 436 335 53 26 chr5 118986506 118986696 -33550563 - MIRb SINE MIR -26 242 48 1 1492 21 0 0 0 chr5 118986700 118986721 -33550538 + AT_rich Low_complexity Low_complexity 1 21 0 1 1492 444 273 7 47 chr5 118986790 118986940 -33550319 - ID_B1 SINE B4 -2 222 79 1 1492 221 234 15 15 chr5 118987212 118987277 -33549982 + (TA)n Simple_repeat Simple_repeat 2 66 0 1 1492 322 261 11 12 chr5 118987281 118987367 -33549892 - B1F SINE Alu -25 122 31 1 1492 539 253 99 18 chr5 118987726 118987926 -33549333 - B4A SINE B4 -44 248 1 1 1492 397 72 0 42 chr5 118987960 118988032 -33549227 + (TTCC)n Simple_repeat Simple_repeat 1 69 0 1 1492 357 242 0 147 chr5 118988055 118988171 -33549088 - ID_B1 SINE B4 -15 209 111 1 1492 331 283 21 11 chr5 118988404 118988497 -33548762 - MamRep434 DNA TcMar -331 95 2 1 1492 264 202 24 32 chr5 118988838 118988961 -33548298 + GA-rich Low_complexity Low_complexity 3 124 0 1 1492 430 279 7 134 chr5 118990230 118990293 -33546966 + ID SINE ID 3 48 -176 1 1492 1166 68 0 13 chr5 118990293 118990443 -33546816 + B1_Mus1 SINE Alu 1 148 0 1 1492 430 279 7 134 chr5 118990443 118990528 -33546731 + ID_B1 SINE B4 49 132 -92 1 1492 262 277 0 0 chr5 118990527 118990592 -33546667 - B2_Mm2 SINE B2 -128 67 3 1 1492 997 112 33 56 chr5 118990698 118990878 -33546381 + B2_Mm2 SINE B2 1 176 -19 1 1492 317 312 72 7 chr5 118990982 118991121 -33546138 - L2a LINE L2 -2 3424 3277 1 1492 781 270 166 38 chr5 118991177 118991724 -33545535 + L1ME1 LINE L1 5554 6170 -9 1 1492 414 0 0 0 chr5 118992395 118992441 -33544818 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1492 1245 70 0 0 chr5 118992670 118992827 -33544432 + B2_Mm2 SINE B2 2 158 -37 1 1492 315 0 0 0 chr5 118992827 118992862 -33544397 + (CAAT)n Simple_repeat Simple_repeat 1 35 0 1 1492 1423 158 4 4 chr5 118992870 118993104 -33544155 - MTD LTR MaLR -45 374 141 1 1492 1801 231 117 18 chr5 118993104 118993521 -33543738 + RLTR20B2 LTR ERVK 1 465 -95 1 1492 372 22 0 0 chr5 118993521 118993566 -33543693 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1492 1801 231 117 18 chr5 118993566 118993651 -33543608 + RLTR20B2 LTR ERVK 466 552 -8 1 1492 527 194 102 0 chr5 118993655 118993763 -33543496 - MTD LTR MaLR -280 139 21 1 1492 281 291 75 28 chr5 118994064 118994170 -33543089 + MIRb SINE MIR 135 245 -23 1 1492 502 127 0 0 chr5 118994285 118994356 -33542903 - B1_Mur2 SINE Alu -1 148 78 1 1492 570 278 105 33 chr5 118994356 118994661 -33542598 + RLTR15 LTR ERVK 1 327 -32 1 1492 2647 276 39 46 chr5 118995784 118996219 -33541040 + MYSERV-int LTR ERVK 3775 4194 -2356 1 1492 3214 156 136 31 chr5 118996219 118996886 -33540373 + RMER19A LTR ERVK 1 737 0 1 1492 2647 268 53 65 chr5 118996886 118997889 -33539370 + MYSERV-int LTR ERVK 4195 5391 -389 1 1492 216 0 0 0 chr5 118997889 118997913 -33539346 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1 1492 485 260 38 48 chr5 118997913 118997929 -33539330 + MYSERV-int LTR ERVK 5392 5407 -373 1 1492 410 278 35 9 chr5 118997966 118998082 -33539177 + RMER4A LTR ERVK 321 439 -27 1 1492 1445 186 12 24 chr5 118998089 118998420 -33538839 + MYSERV-int LTR ERVK 5315 5641 -909 1 1492 1260 41 7 0 chr5 118998423 118998569 -33538690 + B1_Mm SINE Alu 1 147 0 1 1492 474 211 0 0 chr5 118998592 118998696 -33538563 + (TA)n Simple_repeat Simple_repeat 2 105 0 1 1492 2849 191 94 14 chr5 118998696 118999356 -33537903 + MYSERV6-int LTR ERVK 8092 8804 -155 1 1492 1380 270 8 34 chr5 118999370 118999757 -33537502 + MTE2b LTR MaLR 3 379 0 1 1492 855 314 5 5 chr5 118999763 118999968 -33537291 + B4 SINE B4 82 286 -6 1 1492 396 0 0 0 chr5 119000129 119000173 -33537086 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1492 562 167 190 8 chr5 119001351 119001472 -33535787 - ID_B1 SINE B4 0 224 82 2 1492 473 186 101 101 chr5 119001478 119001508 -33535751 - B2_Mm2 SINE B2 -11 184 157 3 1492 855 128 0 0 chr5 119001508 119001649 -33535610 + (TG)n Simple_repeat Simple_repeat 2 142 0 4 1492 653 186 101 101 chr5 119001649 119001797 -33535462 - B3 SINE B2 -39 156 6 3 1492 934 95 0 0 chr5 119001844 119001970 -33535289 + B1_Mur4 SINE Alu 18 143 -7 5 1492 204 229 24 12 chr5 119002085 119002169 -33535090 + (TATG)n Simple_repeat Simple_repeat 2 86 0 6 1492 706 173 0 0 chr5 119002180 119002290 -33534969 + B1_Mur1 SINE Alu 35 144 -5 7 1492 1491 129 4 4 chr5 119002300 119002526 -33534733 - MTC LTR MaLR 0 421 196 8 1492 450 0 0 0 chr5 119002538 119002588 -33534671 + (TA)n Simple_repeat Simple_repeat 2 51 0 9 1492 993 155 8 158 chr5 119002735 119002883 -33534376 - MTC LTR MaLR -212 209 97 8 1492 864 168 201 6 chr5 119002883 119003057 -33534202 - B3 SINE B2 -6 210 3 1 1492 993 155 8 158 chr5 119003057 119003154 -33534105 - MTC LTR MaLR -325 96 1 8 1492 577 271 6 90 chr5 119003205 119003371 -33533888 - B3A SINE B2 -3 195 44 1 1492 281 277 235 33 chr5 119003482 119003635 -33533624 - MIR SINE MIR -2 260 77 1 1492 1423 120 5 9 chr5 119003782 119003992 -33533267 + URR1A DNA MER1_type 1 209 -17 1 1492 754 237 26 61 chr5 119004418 119004647 -33532612 - ID_B1 SINE B4 0 224 4 1 1492 378 0 0 0 chr5 119004712 119004754 -33532505 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1492 291 256 25 25 chr5 119004774 119004854 -33532405 - ID4 SINE ID 0 83 4 1 1492 535 349 35 70 chr5 119004858 119005232 -33532027 + L1ME4a LINE L1 5581 5947 -215 1 1492 225 0 0 0 chr5 119005232 119005257 -33532002 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 1 1492 304 359 76 81 chr5 119005257 119005327 -33531932 + L1ME4a LINE L1 5948 6023 -139 1 1492 884 163 25 69 chr5 119005420 119005624 -33531635 - B3A SINE B2 -1 197 3 1 1492 453 296 68 88 chr5 119005731 119006027 -33531232 - B4A SINE B4 0 292 3 2 1492 283 214 106 49 chr5 119006304 119006427 -33530832 - MIRc SINE MIR -134 134 5 2 1492 230 280 109 10 chr5 119007165 119007266 -33529993 - PB1D7 SINE Alu -8 112 2 2 1492 346 307 134 26 chr5 119007574 119007805 -33529454 - L1MC LINE L1 -2058 5824 5569 2 1492 210 118 0 0 chr5 119007834 119007868 -33529391 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1492 722 183 137 0 chr5 119007872 119008025 -33529234 - B3A SINE B2 -24 174 1 2 1492 477 320 138 42 chr5 119008167 119008500 -33528759 - MLT1A0 LTR MaLR 0 365 1 2 1492 33 0 0 0 chr5 119008516 119008549 -33528710 + AT_rich Low_complexity Low_complexity 1 33 0 2 1492 1230 124 5 15 chr5 119008581 119008777 -33528482 - B2_Mm2 SINE B2 0 195 2 2 1492 284 261 70 96 chr5 119009030 119009187 -33528072 - MIRc SINE MIR -86 182 30 2 1492 361 144 88 82 chr5 119009369 119009469 -33527790 - PB1D9 SINE Alu -16 133 36 3 1492 26 50 0 0 chr5 119010027 119010067 -33527192 + GC_rich Low_complexity Low_complexity 1 40 0 3 1492 249 83 0 0 chr5 119010181 119010217 -33527042 + (CCG)n Simple_repeat Simple_repeat 2 37 0 3 1492 28 0 0 0 chr5 119010220 119010248 -33527011 + GC_rich Low_complexity Low_complexity 1 28 0 3 1492 218 328 0 0 chr5 119010324 119010391 -33526868 + G-rich Low_complexity Low_complexity 1 67 0 3 1492 213 39 0 0 chr5 119010454 119010480 -33526779 + (CGG)n Simple_repeat Simple_repeat 3 28 0 3 1492 237 132 0 0 chr5 119010642 119010680 -33526579 + (CCG)n Simple_repeat Simple_repeat 2 39 0 3 1492 36 62 0 0 chr5 119010689 119010753 -33526506 + GC_rich Low_complexity Low_complexity 1 64 0 3 1492 252 310 0 29 chr5 119011169 119011288 -33525971 + CT-rich Low_complexity Low_complexity 1 115 0 3 1492 270 0 0 0 chr5 119011541 119011571 -33525688 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1492 773 204 250 0 chr5 119013147 119013319 -33523940 - B3 SINE B2 0 216 2 4 1493 618 228 0 8 chr5 119016792 119016920 -33520339 - B1F SINE Alu 0 149 23 4 1493 389 311 29 0 chr5 119016952 119017055 -33520204 + RSINE1 SINE B4 53 158 -7 4 1493 618 194 16 31 chr5 119017689 119017817 -33519442 + B1_Mur4 SINE Alu 15 140 -10 4 1493 243 0 0 0 chr5 119017817 119017844 -33519415 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1493 525 16 0 0 chr5 119017844 119017905 -33519354 + (GA)n Simple_repeat Simple_repeat 2 63 0 4 1493 308 162 384 0 chr5 119018291 119018398 -33518861 - B1F2 SINE Alu 0 149 6 4 1493 270 257 78 26 chr5 119019544 119019660 -33517599 + Tigger15a DNA TcMar 519 640 -75 4 1493 1121 60 0 7 chr5 119021039 119021190 -33516069 + (TCTCCC)n Simple_repeat Simple_repeat 2 151 0 4 1493 435 63 0 0 chr5 119021190 119021253 -33516006 + (TCCCC)n Simple_repeat Simple_repeat 3 65 0 4 1493 822 224 0 0 chr5 119021253 119021400 -33515859 - B1_Mur2 SINE Alu -2 147 1 5 1493 285 29 0 0 chr5 119021576 119021610 -33515649 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1493 375 218 62 18 chr5 119021776 119021888 -33515371 + PB1D9 SINE Alu 2 118 -2 5 1493 507 236 114 0 chr5 119022103 119022243 -33515016 - RSINE1 SINE B4 -6 159 4 5 1493 1781 126 109 0 chr5 119023540 119023834 -33513425 - ORR1A3 LTR MaLR 0 326 1 5 1493 281 297 0 0 chr5 119023893 119023967 -33513292 - ID4_ SINE ID -8 75 2 5 1493 668 210 7 40 chr5 119024683 119024832 -33512427 - B1_Mur4 SINE Alu -6 144 1 5 1493 594 148 0 0 chr5 119024872 119024973 -33512286 + (TG)n Simple_repeat Simple_repeat 1 101 0 5 1493 21 0 0 0 chr5 119025733 119025754 -33511505 + AT_rich Low_complexity Low_complexity 1 21 0 5 1493 842 39 0 0 chr5 119025889 119025992 -33511267 - B1_Mm SINE Alu 0 147 45 5 1493 319 253 12 25 chr5 119025938 119026019 -33511240 - RLTR25A LTR ERVK -531 572 493 6 1493 252 0 0 0 chr5 119026367 119026395 -33510864 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1493 183 114 0 0 chr5 119026395 119026430 -33510829 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1493 280 234 151 58 chr5 119027987 119028073 -33509186 - PB1D10 SINE Alu -34 115 22 6 1493 918 162 0 14 chr5 119028216 119028360 -33508899 - B1_Mur4 SINE Alu 0 150 9 6 1493 249 211 42 14 chr5 119028685 119028757 -33508502 - L1MC LINE L1 -522 5822 5749 6 1493 434 279 93 26 chr5 119028949 119029100 -33508159 + RSINE1 SINE B4 3 163 -2 6 1493 379 297 86 27 chr5 119029117 119029304 -33507955 - L1MC LINE L1 -862 5482 5285 6 1493 216 0 0 0 chr5 119029506 119029530 -33507729 + (CA)n Simple_repeat Simple_repeat 2 25 0 6 1493 27 0 0 0 chr5 119030041 119030068 -33507191 + AT_rich Low_complexity Low_complexity 1 27 0 6 1493 279 278 27 89 chr5 119030279 119030383 -33506876 - Lx8 LINE L1 -1581 5892 5795 6 1493 934 112 34 27 chr5 119030383 119030530 -33506729 - B1_Mus1 SINE Alu 0 148 1 7 1493 279 278 27 89 chr5 119030530 119030571 -33506688 - Lx8 LINE L1 -1679 5794 5756 6 1493 1003 183 119 10 chr5 119030571 119030764 -33506495 + B3 SINE B2 1 214 -2 7 1493 482 222 0 66 chr5 119030767 119030873 -33506386 - B1_Mus2 SINE Alu -47 100 2 7 1493 21 57 0 0 chr5 119030876 119030911 -33506348 + AT_rich Low_complexity Low_complexity 1 35 0 7 1493 258 246 33 0 chr5 119030911 119030972 -33506287 - ID4_ SINE ID -9 74 12 7 1493 235 256 48 12 chr5 119031032 119031115 -33506144 - L1MC LINE L1 -1544 4602 4517 6 1493 567 0 0 0 chr5 119031122 119031185 -33506074 + (TC)n Simple_repeat Simple_repeat 2 64 0 7 1493 189 0 0 0 chr5 119031185 119031205 -33506054 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1493 278 327 108 25 chr5 119031436 119031844 -33505415 - L1M4 LINE L1 -1665 4481 4040 7 1493 805 250 0 27 chr5 119031887 119032088 -33505171 - B3A SINE B2 0 198 20 7 1493 21 36 0 0 chr5 119032886 119032914 -33504345 + AT_rich Low_complexity Low_complexity 1 28 0 7 1493 771 254 30 5 chr5 119032976 119033174 -33504085 - B3 SINE B2 -13 203 1 8 1493 473 188 88 10 chr5 119033733 119033835 -33503424 + PB1D9 SINE Alu 4 113 -7 8 1493 26 0 0 0 chr5 119033835 119033861 -33503398 + AT_rich Low_complexity Low_complexity 1 26 0 8 1493 447 356 34 11 chr5 119033892 119034071 -33503188 + B3A SINE B2 16 198 0 8 1493 559 222 34 8 chr5 119034173 119034291 -33502968 + B4 SINE B4 14 134 -158 8 1493 241 266 83 60 chr5 119034321 119034405 -33502854 + B4 SINE B4 238 290 -2 8 1493 356 213 29 96 chr5 119034576 119034680 -33502579 - RSINE1 SINE B4 0 165 69 8 1493 791 116 16 0 chr5 119034680 119034809 -33502450 + (TCCC)n Simple_repeat Simple_repeat 3 133 0 8 1493 395 200 57 42 chr5 119034845 119034956 -33502303 - B1_Mur4 SINE Alu 0 148 37 8 1493 1618 160 85 29 chr5 119035151 119035492 -33501767 - RCHARR1 DNA MER1_type -114 860 501 8 1493 451 262 55 55 chr5 119035492 119035674 -33501585 + B3A SINE B2 1 182 -16 9 1493 268 200 118 86 chr5 119035712 119035775 -33501484 - RCHARR1 DNA MER1_type -459 515 454 8 1493 1155 190 229 16 chr5 119035775 119035921 -33501338 - ORR1C1 LTR MaLR 0 378 183 9 1493 252 0 0 0 chr5 119035921 119035949 -33501310 + (CAGG)n Simple_repeat Simple_repeat 4 31 0 9 1493 1155 190 229 16 chr5 119035949 119036112 -33501147 - ORR1C1 LTR MaLR -196 182 4 9 1493 268 200 118 86 chr5 119036112 119036141 -33501118 - RCHARR1 DNA MER1_type -521 453 420 8 1493 584 267 132 31 chr5 119036190 119036418 -33500841 - RCHARR1 DNA MER1_type -658 316 66 8 1493 315 309 235 18 chr5 119037256 119037367 -33499892 - HAL1 LINE L1 -1375 1132 993 9 1493 812 204 43 43 chr5 119037367 119037577 -33499682 - B3 SINE B2 -2 214 5 9 1493 315 309 235 18 chr5 119037577 119037848 -33499411 - HAL1 LINE L1 -1515 992 668 9 1493 360 0 0 0 chr5 119038468 119038508 -33498751 + (TG)n Simple_repeat Simple_repeat 2 41 0 9 1493 227 269 0 0 chr5 119038742 119038794 -33498465 - ID4 SINE ID -25 58 7 9 1493 416 248 59 0 chr5 119040392 119040493 -33496766 + RSINE1 SINE B4 1 107 -58 9 1493 291 197 55 27 chr5 119041674 119041747 -33495512 - MER2 DNA MER2_type -141 204 130 9 1493 633 241 45 0 chr5 119041752 119041885 -33495374 + B1_Mur1 SINE Alu 2 140 -9 9 1493 706 209 36 7 chr5 119042603 119042743 -33494516 - B1_Mur3 SINE Alu 0 149 6 1 1493 21 36 0 0 chr5 119042770 119042798 -33494461 + AT_rich Low_complexity Low_complexity 1 28 0 1 1493 673 256 35 25 chr5 119042799 119042999 -33494260 - B3 SINE B2 -7 209 8 1 1493 267 291 97 0 chr5 119043822 119043925 -33493334 - PB1D10 SINE Alu 0 117 5 1 1493 203 0 37 0 chr5 119044008 119044035 -33493224 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1493 1151 68 0 7 chr5 119044039 119044186 -33493073 - B1_Mm SINE Alu 0 147 2 1 1493 212 250 0 0 chr5 119045509 119045545 -33491714 - RSINE1 SINE B4 -116 49 14 1 1493 254 259 103 0 chr5 119045543 119045601 -33491658 - RSINE1 SINE B4 -99 66 3 1 1493 22 0 0 0 chr5 119045837 119045859 -33491400 + AT_rich Low_complexity Low_complexity 1 22 0 1 1493 811 175 0 14 chr5 119045890 119046029 -33491230 - B1_Mur1 SINE Alu -1 148 12 1 1493 181 313 15 0 chr5 119046925 119046992 -33490267 + MIR SINE MIR 76 143 -119 1 1493 282 357 8 0 chr5 119047311 119047440 -33489819 + (TG)n Simple_repeat Simple_repeat 1 130 0 1 1493 469 264 30 42 chr5 119047440 119047606 -33489653 - RSINE1 SINE B4 0 165 2 1 1493 25 51 0 0 chr5 119048509 119048548 -33488711 + AT_rich Low_complexity Low_complexity 1 39 0 1 1493 273 272 196 13 chr5 119048563 119048716 -33488543 - B3A SINE B2 -15 183 3 1 1493 251 288 109 0 chr5 119051047 119051112 -33486147 - PB1D10 SINE Alu -35 85 12 1 1493 397 346 6 64 chr5 119051821 119051994 -33485265 - RSINE1 SINE B4 0 165 3 1 1493 379 213 43 69 chr5 119052445 119052561 -33484698 + PB1D9 SINE Alu 7 119 -1 1 1493 529 159 0 33 chr5 119052653 119052744 -33484515 - B1_Mus2 SINE Alu 0 147 60 1 1493 24 32 0 0 chr5 119053449 119053480 -33483779 + AT_rich Low_complexity Low_complexity 1 31 0 1 1493 264 30 0 0 chr5 119053897 119053930 -33483329 + (TATG)n Simple_repeat Simple_repeat 4 36 0 1 1493 27 0 0 0 chr5 119055129 119055156 -33482103 + AT_rich Low_complexity Low_complexity 1 27 0 1 1493 953 219 0 11 chr5 119055159 119055339 -33481920 - B3 SINE B2 -17 199 22 1 1493 514 309 88 28 chr5 119055881 119056097 -33481162 + MTE2a LTR MaLR 151 379 0 1 1493 263 279 107 9 chr5 119057737 119057849 -33479410 - L1MC4 LINE L1 -1172 6870 6748 1 1493 711 141 87 1 chr5 119058259 119058374 -33478885 - B1_Mur1 SINE Alu 0 150 26 1 1493 1175 69 7 0 chr5 119058374 119058519 -33478740 + B1_Mus2 SINE Alu 2 147 0 1 1493 685 157 59 176 chr5 119058519 119058573 -33478686 - B1_Mur4 SINE Alu -110 40 1 1 1493 25 31 0 0 chr5 119058595 119058627 -33478632 + AT_rich Low_complexity Low_complexity 1 32 0 1 1493 967 227 5 5 chr5 119058628 119058836 -33478423 - B3 SINE B2 -5 211 4 1 1493 496 167 3 0 chr5 119058843 119058936 -33478323 + B1_Mus2 SINE Alu 10 104 -16 1 1493 229 196 36 0 chr5 119060073 119060129 -33477130 - ID2 SINE ID -2 81 24 1 1493 396 0 0 0 chr5 119062066 119062110 -33475149 + (TGG)n Simple_repeat Simple_repeat 3 46 0 1 1493 523 246 17 34 chr5 119062190 119062308 -33474951 - RSINE1 SINE B4 -40 125 10 1 1493 572 186 78 0 chr5 119062344 119062446 -33474813 - ID_B1 SINE B4 -8 216 107 1 1493 228 255 84 143 chr5 119062373 119062492 -33474767 - MT2B LTR ERVL -338 263 152 1 1493 827 215 28 39 chr5 119062629 119062808 -33474451 - B3 SINE B2 -38 178 2 1 1493 342 0 0 0 chr5 119063809 119063847 -33473412 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1493 243 0 0 0 chr5 119064957 119064984 -33472275 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1493 630 161 67 8 chr5 119065005 119065124 -33472135 - B3 SINE B2 -89 127 2 1 1493 366 61 0 0 chr5 119065887 119065936 -33471323 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 1 1493 859 223 19 14 chr5 119066093 119066307 -33470952 - B3 SINE B2 0 216 2 1 1493 776 265 137 12 chr5 119066758 119066999 -33470260 - B4A SINE B4 -21 271 1 1 1493 314 328 22 15 chr5 119067685 119067821 -33469438 + L1MD1 LINE L1 5197 5333 -813 1 1493 297 0 0 0 chr5 119067903 119067936 -33469323 + (CAG)n Simple_repeat Simple_repeat 1 33 0 1 1493 408 241 113 22 chr5 119068212 119068418 -33468841 + L1MD1 LINE L1 5813 6025 -334 1 1493 224 30 30 0 chr5 119068623 119068656 -33468603 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1493 384 253 13 0 chr5 119068776 119068855 -33468404 - PB1D10 SINE Alu -16 101 22 1 1493 441 252 65 0 chr5 119069943 119070050 -33467209 - RMER19A LTR ERVK -446 291 178 1 1493 2017 189 249 46 chr5 119070325 119070936 -33466323 + RMER19A LTR ERVK 2 736 -1 1 1493 1018 262 70 44 chr5 119072066 119072472 -33464787 + MTC LTR MaLR 2 407 -14 1 1493 302 61 20 0 chr5 119074861 119074910 -33462349 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1493 812 205 0 4 chr5 119075359 119075597 -33461662 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 1 1493 189 107 0 0 chr5 119075602 119075630 -33461629 + (CAGA)n Simple_repeat Simple_repeat 2 29 0 1 1493 296 308 158 12 chr5 119075965 119076136 -33461123 - MER20 DNA MER1_type -14 205 10 1 1493 411 257 55 73 chr5 119076737 119076901 -33460358 - B3A SINE B2 0 198 38 1 1493 346 259 93 0 chr5 119076968 119077076 -33460183 + PB1D7 SINE Alu 1 118 -2 1 1493 25 31 0 0 chr5 119078035 119078067 -33459192 + AT_rich Low_complexity Low_complexity 1 32 0 1 1493 315 0 0 0 chr5 119079154 119079189 -33458070 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 1 1493 280 205 145 0 chr5 119079321 119079404 -33457855 - ID_B1 SINE B4 -2 222 128 1 1493 226 236 254 0 chr5 119079404 119079431 -33457828 - B1F2 SINE Alu 0 149 12 1 1493 364 328 16 0 chr5 119079712 119079834 -33457425 - B1F SINE Alu -3 146 23 1 1493 258 396 0 28 chr5 119079716 119079859 -33457400 - ID_B1 SINE B4 -7 217 79 1 1493 315 0 0 0 chr5 119079945 119079980 -33457279 + (T)n Simple_repeat Simple_repeat 1 35 0 1 1493 1084 75 0 27 chr5 119079980 119080130 -33457129 - B1_Mus2 SINE Alu 0 147 2 1 1493 320 211 0 27 chr5 119080328 119080401 -33456858 - B1F2 SINE Alu -20 129 59 1 1493 469 230 242 0 chr5 119080944 119081122 -33456137 - ID_B1 SINE B4 -1 223 3 1 1493 223 306 75 75 chr5 119081233 119081392 -33455867 + L3 LINE CR1 3638 3796 -693 1 1493 401 338 24 48 chr5 119081878 119082043 -33455216 + Charlie1a DNA MER1_type 1 161 -1294 1 1493 709 225 72 39 chr5 119082140 119082348 -33454911 - B3 SINE B2 0 216 2 1 1493 1010 81 15 0 chr5 119082979 119083115 -33454144 + B1_Mus1 SINE Alu 2 139 -9 1 1493 243 0 0 0 chr5 119083115 119083142 -33454117 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1493 243 0 0 0 chr5 119083437 119083464 -33453795 + (TCTG)n Simple_repeat Simple_repeat 3 29 0 1 1493 940 150 13 13 chr5 119083795 119083934 -33453325 + B1_Mur4 SINE Alu 1 141 -9 1 1493 225 0 0 0 chr5 119083934 119083959 -33453300 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1 1493 639 0 0 0 chr5 119084931 119085002 -33452257 + (CACAC)n Simple_repeat Simple_repeat 1 71 0 1 1493 468 0 0 0 chr5 119086929 119086981 -33450278 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1493 257 284 76 84 chr5 119087081 119087200 -33450059 - B3A SINE B2 -98 118 1 1 1493 1089 43 57 0 chr5 119087308 119087448 -33449811 - B1_Mus1 SINE Alu 0 148 1 1 1493 216 278 33 141 chr5 119087560 119087652 -33449607 + RSINE1 SINE B4 21 102 -63 1 1493 327 25 0 0 chr5 119087679 119087719 -33449540 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1493 442 273 47 61 chr5 119088428 119088576 -33448683 - B1_Mur1 SINE Alu 0 149 4 1 1493 432 0 0 0 chr5 119088604 119088652 -33448607 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1493 243 0 0 0 chr5 119089507 119089534 -33447725 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1493 232 333 0 82 chr5 119090394 119090416 -33446843 - B2_Mm1a SINE B2 -55 138 117 1 1493 180 0 0 0 chr5 119090416 119090436 -33446823 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1493 250 182 0 120 chr5 119090436 119090512 -33446747 - B2_Mm2 SINE B2 -77 116 48 1 1493 1205 105 40 11 chr5 119090545 119090719 -33446540 - B2_Mm1t SINE B2 -14 179 1 1 1493 458 218 17 52 chr5 119090733 119090849 -33446410 - PB1D10 SINE Alu -1 116 5 1 1493 340 331 88 52 chr5 119091643 119091837 -33445422 + MER2 DNA MER2_type 88 288 -57 1 1493 362 190 219 166 chr5 119092246 119092511 -33444748 + Lx9 LINE L1 7365 7643 -1 1 1493 597 224 108 10 chr5 119093012 119093147 -33444112 - RMER1A Other Other -2 1028 876 1 1493 279 0 0 0 chr5 119093147 119093178 -33444081 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1493 597 224 108 10 chr5 119093178 119093236 -33444023 - RMER1A Other Other -155 875 816 1 1493 306 50 0 0 chr5 119093631 119093671 -33443588 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1493 24 0 0 0 chr5 119093968 119093992 -33443267 + AT_rich Low_complexity Low_complexity 1 24 0 1 1493 237 119 0 0 chr5 119094244 119094286 -33442973 + (CGGGG)n Simple_repeat Simple_repeat 1 42 0 1 1493 351 0 0 0 chr5 119094618 119094657 -33442602 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1493 358 214 45 45 chr5 119094677 119094765 -33442494 - ID_B1 SINE B4 -35 189 102 1 1493 555 29 0 0 chr5 119094775 119094844 -33442415 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1493 183 156 0 0 chr5 119095956 119095988 -33441271 + C-rich Low_complexity Low_complexity 5 36 0 1 1493 1223 41 7 0 chr5 119098746 119098892 -33438367 - B1_Mus1 SINE Alu 0 148 2 1 1493 1385 78 10 5 chr5 119099213 119099406 -33437853 - B2_Mm2 SINE B2 0 195 2 1 1493 207 0 0 0 chr5 119099581 119099604 -33437655 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1493 1357 80 0 6 chr5 119100507 119100684 -33436575 + B2_Mm2 SINE B2 1 176 -19 2 1493 468 0 0 0 chr5 119101667 119101719 -33435540 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1493 1268 35 0 0 chr5 119103093 119103238 -33434021 + B1_Mm SINE Alu 1 145 -2 2 1493 327 65 0 0 chr5 119103240 119103286 -33433973 + (A)n Simple_repeat Simple_repeat 1 46 0 2 1493 314 277 29 125 chr5 119103356 119103492 -33433767 + PB1 SINE Alu 1 123 -4 2 1493 244 164 82 82 chr5 119104243 119104316 -33432943 - PB1D7 SINE Alu -2 147 69 2 1493 209 287 120 83 chr5 119104395 119104528 -33432731 - L2a LINE L2 -47 3379 3242 2 1493 186 133 0 0 chr5 119104796 119104826 -33432433 + (ACCG)n Simple_repeat Simple_repeat 2 31 0 2 1493 577 147 142 37 chr5 119106292 119106426 -33430833 + B1F2 SINE Alu 2 149 0 2 1493 343 369 74 20 chr5 119109026 119109228 -33428031 - MLT1G LTR MaLR -15 576 364 2 1493 324 369 133 17 chr5 119110048 119110288 -33426971 - MLT1G LTR MaLR -325 270 3 2 1493 1066 45 0 0 chr5 119112564 119112696 -33424563 + B1_Mus2 SINE Alu 16 147 0 2 1493 234 81 0 0 chr5 119112719 119112756 -33424503 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 2 1493 282 116 0 0 chr5 119113320 119113363 -33423896 + (TCCCC)n Simple_repeat Simple_repeat 2 44 0 2 1493 423 0 0 0 chr5 119113369 119113416 -33423843 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 2 1493 3028 153 169 40 chr5 119115001 119115647 -33421612 - RMER19B LTR ERVK -12 890 162 2 1493 270 81 0 0 chr5 119115848 119115885 -33421374 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1493 276 59 59 0 chr5 119116591 119116642 -33420617 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1493 202 208 18 36 chr5 119117475 119117530 -33419729 + (TATG)n Simple_repeat Simple_repeat 2 55 0 2 1493 357 242 88 0 chr5 119117575 119117666 -33419593 + PB1D7 SINE Alu 15 113 -7 2 1493 189 74 0 0 chr5 119119906 119119933 -33417326 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1493 214 270 0 0 chr5 119120955 119121018 -33416241 + T-rich Low_complexity Low_complexity 1 63 0 2 1493 407 318 157 39 chr5 119121484 119122016 -33415243 - L1MC4 LINE L1 -233 7762 7090 2 1493 1095 71 0 14 chr5 119122576 119122718 -33414541 - B1_Mus2 SINE Alu -6 141 2 2 1493 995 218 24 9 chr5 119124868 119125081 -33412178 - B3 SINE B2 0 216 1 2 1493 189 107 0 0 chr5 119125176 119125204 -33412055 + (TCCCC)n Simple_repeat Simple_repeat 2 29 0 2 1493 281 338 69 53 chr5 119125280 119125527 -33411732 - MLT1I LTR MaLR -89 322 72 2 1493 290 45 0 22 chr5 119126199 119126244 -33411015 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1493 483 33 0 0 chr5 119127044 119127105 -33410154 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 2 1493 397 302 74 106 chr5 119129174 119129209 -33408050 + B4 SINE B4 47 225 -63 2 1493 898 141 0 53 chr5 119129209 119129359 -33407900 + B1_Mus1 SINE Alu 6 147 -1 2 1493 251 316 45 28 chr5 119130130 119130296 -33406963 + Kanga1 DNA Tc2 4 171 -1574 2 1493 25 0 0 0 chr5 119131268 119131293 -33405966 + AT_rich Low_complexity Low_complexity 1 25 0 2 1493 1395 85 11 0 chr5 119132363 119132551 -33404708 + B2_Mm2 SINE B2 2 191 -4 2 1493 25 0 0 0 chr5 119132816 119132841 -33404418 + AT_rich Low_complexity Low_complexity 1 25 0 2 1493 3397 33 8 0 chr5 119133025 119133418 -33403841 - MTA_Mm LTR MaLR 0 396 1 2 1493 8122 77 23 2 chr5 119133418 119134493 -33402766 - MTA_Mm-int LTR MaLR 0 1098 1 2 1493 3123 40 45 0 chr5 119134493 119134872 -33402387 - MTA_Mm LTR MaLR 0 396 1 2 1493 256 351 61 8 chr5 119135306 119135438 -33401821 - MER20 DNA MER1_type -74 145 7 2 1493 671 224 32 0 chr5 119136752 119136877 -33400382 - B1_Mur1 SINE Alu 0 149 21 2 1493 2013 167 254 2 chr5 119136877 119137298 -33399961 - RLTR11A LTR ERVK -1 527 1 2 1493 21 0 0 0 chr5 119138974 119138995 -33398264 + GC_rich Low_complexity Low_complexity 1 21 0 2 1493 264 59 0 0 chr5 119140305 119140339 -33396920 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 2 1493 757 214 283 11 chr5 119140347 119140630 -33396629 - ORR1D1 LTR MaLR -13 361 2 2 1493 495 87 0 0 chr5 119140873 119140942 -33396317 + (CA)n Simple_repeat Simple_repeat 2 70 0 2 1493 1861 179 27 49 chr5 119141140 119141545 -33395714 + RMER10B LTR ERVL 1 396 -2 2 1493 196 312 0 0 chr5 119142157 119142205 -33395054 + MIR SINE MIR 37 84 -178 2 1493 25 31 0 0 chr5 119142288 119142320 -33394939 + AT_rich Low_complexity Low_complexity 1 32 0 2 1493 1411 75 32 0 chr5 119142739 119142927 -33394332 - B2_Mm2 SINE B2 -1 194 1 2 1493 964 201 204 3 chr5 119143194 119143498 -33393761 + ORR1D1 LTR MaLR 2 366 -8 2 1494 511 287 31 67 chr5 119145180 119145374 -33391885 + B3 SINE B2 30 216 0 2 1494 1255 82 60 6 chr5 119145388 119145571 -33391688 + B2_Mm2 SINE B2 1 193 -2 2 1494 229 291 162 19 chr5 119145670 119145775 -33391484 - MIRb SINE MIR -72 196 77 2 1494 699 255 57 24 chr5 119148895 119149104 -33388155 + B3 SINE B2 1 216 0 2 1494 2175 186 113 20 chr5 119150586 119151074 -33386185 + MT2A LTR ERVL 1 533 0 2 1494 743 209 80 15 chr5 119154271 119154470 -33382789 - B3 SINE B2 -4 212 1 2 1494 436 45 0 15 chr5 119154491 119154558 -33382701 + L1Md_F2 LINE L1 6517 6582 0 2 1494 369 0 0 0 chr5 119154846 119154887 -33382372 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 2 1494 363 241 166 14 chr5 119154887 119155026 -33382233 - RSINE1 SINE B4 -3 162 3 2 1494 201 152 0 0 chr5 119159275 119159308 -33377951 + (TCTG)n Simple_repeat Simple_repeat 4 36 0 2 1494 519 158 27 27 chr5 119160620 119160731 -33376528 - B1_Mus2 SINE Alu -20 127 17 2 1494 180 111 0 0 chr5 119161281 119161308 -33375951 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1494 668 218 54 0 chr5 119162356 119162503 -33374756 - RSINE1 SINE B4 -6 159 5 2 1494 2145 145 107 23 chr5 119162612 119163042 -33374217 + RMER4A LTR ERVK 1 466 0 2 1494 272 295 20 27 chr5 119163161 119163265 -33373994 + PB1D10 SINE Alu 10 114 -6 2 1494 1675 26 0 5 chr5 119164351 119164541 -33372718 + B2_Mm2 SINE B2 1 189 -6 2 1494 233 346 39 29 chr5 119164660 119164764 -33372495 + MLT1A0 LTR MaLR 157 261 -104 2 1494 245 246 30 30 chr5 119164997 119165064 -33372195 + B4A SINE B4 2 68 -224 2 1494 252 0 0 0 chr5 119165064 119165092 -33372167 + (CAG)n Simple_repeat Simple_repeat 1 28 0 2 1494 233 0 62 0 chr5 119165236 119165268 -33371991 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 2 1494 459 250 120 14 chr5 119165466 119165608 -33371651 + B3 SINE B2 54 210 -6 2 1494 313 368 0 0 chr5 119167904 119168018 -33369241 - PB1D7 SINE Alu -2 118 5 2 1494 465 149 287 9 chr5 119169551 119169659 -33367600 + B1_Mus1 SINE Alu 5 142 -6 2 1494 186 103 0 0 chr5 119170118 119170147 -33367112 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1494 542 301 43 19 chr5 119170272 119170482 -33366777 + B4A SINE B4 1 215 -77 2 1494 225 243 99 14 chr5 119170607 119170678 -33366581 + B4A SINE B4 214 290 -2 2 1494 244 224 175 50 chr5 119172578 119172658 -33364601 - MTEa LTR MaLR -287 92 3 2 1494 22 0 0 0 chr5 119172811 119172833 -33364426 + GC_rich Low_complexity Low_complexity 1 22 0 2 1494 315 270 6 11 chr5 119174609 119174785 -33362474 + (TG)n Simple_repeat Simple_repeat 2 176 0 2 1494 780 241 37 46 chr5 119174806 119175023 -33362236 - B3 SINE B2 -1 215 1 2 1494 419 240 10 0 chr5 119175064 119175168 -33362091 - B3A SINE B2 -91 107 3 2 1494 470 114 0 12 chr5 119175869 119175949 -33361310 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 1494 183 42 0 0 chr5 119176424 119176448 -33360811 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 2 1494 21 0 0 0 chr5 119181972 119181993 -33355266 + AT_rich Low_complexity Low_complexity 1 21 0 2 1494 410 88 474 0 chr5 119183328 119183442 -33353817 - B2_Mm1a SINE B2 -7 188 21 2 1494 27 0 0 0 chr5 119184390 119184417 -33352842 + GC_rich Low_complexity Low_complexity 1 27 0 2 1494 198 206 0 0 chr5 119185125 119185198 -33352061 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 1494 27 29 0 0 chr5 119186398 119186432 -33350827 + AT_rich Low_complexity Low_complexity 1 34 0 2 1494 180 0 0 0 chr5 119186444 119186464 -33350795 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1494 762 192 70 29 chr5 119186477 119186649 -33350610 - B3A SINE B2 -16 182 4 2 1494 685 149 42 69 chr5 119186660 119186804 -33350455 - B1_Mur2 SINE Alu 0 149 10 2 1494 465 50 0 0 chr5 119189180 119189240 -33348019 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 1494 351 0 0 0 chr5 119191593 119191632 -33345627 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1494 306 0 0 0 chr5 119191632 119191665 -33345594 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 1494 202 316 0 0 chr5 119191675 119191732 -33345527 + CT-rich Low_complexity Low_complexity 4 60 0 2 1494 226 205 0 0 chr5 119191676 119191715 -33345544 + polypyrimidine Low_complexity Low_complexity 3 41 0 2 1494 279 238 0 0 chr5 119193246 119193309 -33343950 + tRNA-Ala-GCA tRNA tRNA 5 67 -8 2 1494 576 206 19 1 chr5 119194000 119194124 -33343135 + B1_Mur1 SINE Alu 21 149 0 2 1494 386 278 18 107 chr5 119194124 119194293 -33342966 + B3A SINE B2 27 180 -18 2 1494 1058 193 15 0 chr5 119194322 119194524 -33342735 - B3 SINE B2 -11 205 1 2 1494 802 207 169 35 chr5 119196696 119197016 -33340243 - MTD LTR MaLR -11 408 1 2 1494 287 259 23 3 chr5 119197602 119197698 -33339561 - PB1D9 SINE Alu -25 95 1 2 1494 210 277 121 0 chr5 119200068 119200151 -33337108 - PB1D9 SINE Alu -1 119 27 2 1494 232 324 14 14 chr5 119202331 119202403 -33334856 + B4A SINE B4 3 74 -218 2 1494 360 173 188 18 chr5 119202436 119202548 -33334711 - Lx9 LINE L1 -435 7209 7079 3 1494 236 139 0 0 chr5 119202555 119202591 -33334668 + Lx9 LINE L1 7215 7250 -394 3 1494 312 223 394 52 chr5 119202640 119202836 -33334423 + Lx9 LINE L1 7372 7634 -10 3 1494 266 321 88 10 chr5 119204999 119205216 -33332043 + MIRb SINE MIR 8 245 -23 3 1494 378 0 0 0 chr5 119205773 119205815 -33331444 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1494 477 279 54 54 chr5 119211760 119211927 -33325332 + ID_B1 SINE B4 43 209 -15 3 1494 251 353 8 48 chr5 119212444 119212569 -33324690 - Charlie5 DNA MER1_type -49 2575 2456 3 1494 220 224 0 0 chr5 119214660 119214709 -33322550 + A-rich Low_complexity Low_complexity 1 49 0 3 1494 35 0 0 0 chr5 119214982 119215017 -33322242 + AT_rich Low_complexity Low_complexity 1 35 0 3 1494 204 158 0 0 chr5 119215165 119215203 -33322056 + T-rich Low_complexity Low_complexity 1 38 0 3 1494 330 115 0 0 chr5 119216224 119216276 -33320983 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1494 205 246 0 0 chr5 119217013 119217074 -33320185 + T-rich Low_complexity Low_complexity 6 66 0 3 1494 463 77 0 53 chr5 119217074 119217163 -33320096 - B1_Mm SINE Alu 0 147 40 3 1494 291 54 0 0 chr5 119217285 119217322 -33319937 + (GGA)n Simple_repeat Simple_repeat 2 38 0 3 1494 22 0 0 0 chr5 119219125 119219147 -33318112 + AT_rich Low_complexity Low_complexity 1 22 0 3 1494 1015 99 62 57 chr5 119219502 119219695 -33317564 - B2_Mm2 SINE B2 0 195 2 3 1494 1359 75 37 0 chr5 119220534 119220722 -33316537 + B2_Mm2 SINE B2 1 195 0 3 1494 331 225 0 53 chr5 119220727 119220821 -33316438 - ORR1D2 LTR MaLR -228 142 54 3 1494 578 210 8 8 chr5 119222246 119222366 -33314893 - L1_Rod LINE L1 -6546 626 507 3 1494 591 222 24 0 chr5 119223162 119223288 -33313971 - B3A SINE B2 -69 129 1 3 1494 286 337 86 38 chr5 119223756 119223966 -33313293 - L1MD3 LINE L1 -348 7647 7428 3 1494 237 311 80 68 chr5 119224241 119224403 -33312856 - MER53 DNA hAT -3 190 27 3 1494 613 133 0 184 chr5 119224438 119224585 -33312674 - PB1D9 SINE Alu 0 120 1 3 1494 618 261 6 6 chr5 119224947 119225105 -33312154 + RSINE1 SINE B4 4 161 -4 3 1494 266 73 24 0 chr5 119225232 119225273 -33311986 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 3 1494 1172 55 7 0 chr5 119225274 119225419 -33311840 - B1_Mus2 SINE Alu 0 147 2 3 1494 367 326 0 0 chr5 119227528 119227617 -33309642 + RSINE1 SINE B4 59 147 -18 3 1494 237 159 0 0 chr5 119228019 119228063 -33309196 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 1494 427 275 142 8 chr5 119228190 119228444 -33308815 + L1MEe LINE L1 2369 2656 -3490 3 1494 1058 269 86 3 chr5 119229023 119229314 -33307945 - MTE2b LTR MaLR -60 319 5 3 1494 343 307 23 40 chr5 119229464 119229486 -33307773 - L1MC1 LINE L1 -1936 5849 5830 3 1494 647 119 101 0 chr5 119229486 119229525 -33307734 - PB1D9 SINE Alu 0 120 81 3 1494 216 0 0 0 chr5 119229525 119229549 -33307710 + (GCCTG)n Simple_repeat Simple_repeat 5 28 0 3 1494 647 119 101 0 chr5 119229549 119229618 -33307641 - PB1D9 SINE Alu -40 80 2 3 1494 455 260 27 27 chr5 119229618 119229768 -33307491 - L1MC1 LINE L1 -504 5829 5680 3 1494 665 236 13 13 chr5 119229805 119229955 -33307304 + RSINE1 SINE B4 3 152 -13 3 1494 264 211 28 0 chr5 119230052 119230123 -33307136 - L1MC1 LINE L1 -946 5387 5315 3 1494 255 31 0 0 chr5 119230126 119230158 -33307101 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1494 342 238 9 56 chr5 119230497 119230604 -33306655 - RLTR25B LTR ERVK -485 543 442 3 1494 690 142 0 32 chr5 119230509 119230633 -33306626 - B1_Mus1 SINE Alu -12 136 17 3 1494 335 143 23 105 chr5 119230918 119231004 -33306255 + ID_B1 SINE B4 133 211 -13 3 1494 239 323 0 20 chr5 119231004 119231102 -33306157 + CT-rich Low_complexity Low_complexity 3 98 0 3 1494 181 359 95 20 chr5 119231879 119232027 -33305232 - MIRb SINE MIR -23 245 87 3 1494 242 309 0 23 chr5 119232049 119232135 -33305124 - MIRc SINE MIR -133 135 52 3 1494 523 198 74 49 chr5 119232153 119232275 -33304984 - B1F1 SINE Alu -1 148 24 3 1494 396 0 0 0 chr5 119232697 119232741 -33304518 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1494 483 258 8 61 chr5 119232949 119233081 -33304178 - B3 SINE B2 0 216 92 3 1494 219 224 42 69 chr5 119233203 119233275 -33303984 - MIR3 SINE MIR -38 170 101 3 1494 2651 208 89 48 chr5 119233654 119234324 -33302935 + Lx5 LINE L1 6375 7050 0 3 1494 332 323 42 15 chr5 119235054 119235217 -33302042 + MIRc SINE MIR 19 186 -82 3 1494 348 345 0 25 chr5 119235304 119235426 -33301833 - ID_B1 SINE B4 -28 196 78 3 1494 361 220 148 10 chr5 119235614 119235715 -33301544 - PB1D10 SINE Alu -1 116 2 3 1494 1715 133 81 3 chr5 119236001 119236311 -33300948 - ORR1C1 LTR MaLR -44 334 1 3 1494 473 281 128 30 chr5 119236323 119236558 -33300701 - MT2A LTR ERVL -97 436 179 3 1494 187 211 37 37 chr5 119236808 119236862 -33300397 + MER5A DNA MER1_type 122 175 -14 3 1494 1094 128 203 0 chr5 119237177 119237364 -33299895 + URR1B DNA MER1_type 1 225 0 3 1494 314 264 64 11 chr5 119238250 119238380 -33298879 - ORR1E LTR MaLR -18 361 236 3 1494 415 274 34 8 chr5 119238427 119238545 -33298714 + ORR1E LTR MaLR 1 121 -238 3 1494 2271 143 43 0 chr5 119238612 119239003 -33298256 + MTC LTR MaLR 14 421 0 3 1494 240 283 0 0 chr5 119239412 119239472 -33297787 + L1MC LINE L1 4793 4852 -1294 3 1494 1751 269 142 12 chr5 119239801 119240377 -33296882 - Lx8 LINE L1 -94 7379 6729 3 1494 386 307 51 51 chr5 119240378 119240507 -33296752 + ORR1D2 LTR MaLR 1 127 -243 3 1494 1048 149 11 42 chr5 119240507 119240696 -33296563 - B2_Mm2 SINE B2 -10 185 3 3 1494 386 307 51 51 chr5 119240696 119240741 -33296518 + ORR1D2 LTR MaLR 128 174 -196 3 1494 194 150 25 0 chr5 119240746 119240786 -33296473 + CT-rich Low_complexity Low_complexity 3 43 0 3 1494 774 219 101 38 chr5 119240786 119240995 -33296264 + ORR1D2 LTR MaLR 149 370 0 3 1494 1405 255 48 16 chr5 119240999 119241377 -33295882 - Lx8 LINE L1 -745 6728 6339 3 1494 443 306 143 20 chr5 119241404 119241607 -33295652 + L1M4 LINE L1 5133 5360 -786 3 1494 236 367 104 21 chr5 119241607 119241799 -33295460 + L1ME2z LINE L1 5733 5940 -504 3 1494 1127 82 0 7 chr5 119241799 119241934 -33295325 + B1_Mus1 SINE Alu 3 137 -11 3 1494 243 0 0 0 chr5 119241934 119241961 -33295298 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1494 1127 82 0 7 chr5 119241961 119241972 -33295287 + B1_Mus1 SINE Alu 138 148 0 3 1494 330 291 154 0 chr5 119241996 119242113 -33295146 + RSINE1 SINE B4 3 137 -28 3 1494 1698 220 67 20 chr5 119242125 119242515 -33294744 + MT2A LTR ERVL 1 408 -125 3 1494 320 258 87 8 chr5 119242845 119242970 -33294289 - L1M5 LINE L1 -589 5589 5449 3 1494 529 243 14 29 chr5 119243272 119243412 -33293847 + RSINE1 SINE B4 2 139 -26 3 1494 198 0 0 0 chr5 119243449 119243471 -33293788 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 1494 1092 95 0 0 chr5 119244081 119244822 -33292437 + (GGA)n Simple_repeat Simple_repeat 1 741 0 3 1494 465 34 0 0 chr5 119244822 119244881 -33292378 + (CAG)n Simple_repeat Simple_repeat 3 61 0 3 1494 468 0 0 0 chr5 119244881 119244933 -33292326 + (GAA)n Simple_repeat Simple_repeat 3 54 0 3 1494 245 272 165 9 chr5 119245481 119245596 -33291663 - L1M5 LINE L1 -697 5477 5345 3 1494 402 297 0 18 chr5 119246645 119246758 -33290501 + PB1D10 SINE Alu 6 116 -1 3 1494 254 347 47 34 chr5 119246889 119247038 -33290221 + MER74A LTR ERVL 387 537 -21 3 1494 766 225 52 14 chr5 119247049 119247150 -33290109 + ID_B1 SINE B4 1 109 -115 3 1494 2230 92 3 84 chr5 119247150 119247505 -33289754 - ORR1A2 LTR MaLR -1 326 1 3 1494 766 225 52 14 chr5 119247505 119247615 -33289644 + ID_B1 SINE B4 110 220 -4 3 1494 1239 104 13 1 chr5 119248938 119249135 -33288124 - B2_Mm2 SINE B2 0 216 2 3 1494 234 0 0 0 chr5 119249191 119249217 -33288042 + (ATG)n Simple_repeat Simple_repeat 2 27 0 3 1494 249 222 19 0 chr5 119249247 119249301 -33287958 + B4 SINE B4 2 56 -236 3 1494 463 295 111 5 chr5 119249296 119249504 -33287755 - B4 SINE B4 -59 233 4 3 1494 960 139 0 0 chr5 119249668 119249826 -33287433 + (TCCC)n Simple_repeat Simple_repeat 1 158 0 3 1494 438 263 10 0 chr5 119249860 119249959 -33287300 - ID_B1 SINE B4 0 224 125 3 1494 268 241 159 9 chr5 119249878 119249991 -33287268 - B1F1 SINE Alu -19 130 1 3 1494 2226 111 108 3 chr5 119249997 119250357 -33286902 + MTC LTR MaLR 24 421 0 3 1494 473 222 92 7 chr5 119250614 119250732 -33286527 - B1_Mur3 SINE Alu -25 124 2 3 1494 249 310 64 83 chr5 119250638 119250747 -33286512 - MT2B LTR ERVL -344 257 151 3 1494 732 61 0 0 chr5 119251444 119251542 -33285717 + (GGA)n Simple_repeat Simple_repeat 1 98 0 3 1494 333 221 0 7 chr5 119251571 119251713 -33285546 + GA-rich Low_complexity Low_complexity 1 140 0 3 1494 734 226 6 19 chr5 119252039 119252197 -33285062 - ID_B1 SINE B4 -67 157 2 3 1494 2145 85 7 3 chr5 119252507 119252814 -33284445 - MTC LTR MaLR 0 421 114 3 1494 1077 145 17 97 chr5 119252825 119253062 -33284197 + URR1A DNA MER1_type 1 218 -8 3 1494 379 175 0 0 chr5 119253058 119253121 -33284138 - MTC LTR MaLR -358 63 1 3 1494 229 247 163 20 chr5 119254216 119254399 -33282860 - MIRm SINE MIR -4 264 42 3 1494 303 28 0 0 chr5 119254841 119254877 -33282382 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3 1494 472 345 34 6 chr5 119254957 119255135 -33282124 + B4A SINE B4 83 265 -27 3 1494 2102 174 56 25 chr5 119255529 119255924 -33281335 + MTB_Mm LTR MaLR 1 407 0 3 1494 1213 62 0 0 chr5 119256237 119256382 -33280877 + B1_Mm SINE Alu 3 147 0 3 1494 210 37 0 0 chr5 119256389 119256416 -33280843 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 3 1494 344 59 0 19 chr5 119256433 119256485 -33280774 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 3 1494 681 76 0 0 chr5 119256639 119256731 -33280528 + (TA)n Simple_repeat Simple_repeat 1 92 0 3 1494 587 245 21 7 chr5 119256897 119257041 -33280218 - B4A SINE B4 -63 229 84 3 1494 245 211 41 27 chr5 119257066 119257139 -33280120 - B3 SINE B2 -13 203 130 3 1494 920 228 15 19 chr5 119257148 119257354 -33279905 - B4 SINE B4 -86 206 2 4 1494 421 368 23 0 chr5 119257378 119257549 -33279710 - Zaphod DNA Tip100 -487 3544 3370 4 1494 288 256 58 11 chr5 119259472 119259559 -33277700 + MIRb SINE MIR 40 130 -138 4 1494 231 387 0 0 chr5 119259581 119259656 -33277603 + MIR SINE MIR 185 259 -3 4 1494 321 47 0 0 chr5 119259731 119259774 -33277485 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1494 593 199 96 30 chr5 119260155 119260290 -33276969 + B1_Mur2 SINE Alu 2 145 -4 4 1494 234 0 0 0 chr5 119260294 119260320 -33276939 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1494 189 0 0 0 chr5 119260344 119260365 -33276894 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 1494 522 174 17 17 chr5 119260774 119260949 -33276310 + (TG)n Simple_repeat Simple_repeat 2 176 0 4 1494 234 204 21 11 chr5 119260967 119261061 -33276198 + (TG)n Simple_repeat Simple_repeat 1 95 0 4 1494 497 199 11 11 chr5 119261086 119261264 -33275995 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 1494 378 0 0 0 chr5 119261261 119261303 -33275956 + (TGG)n Simple_repeat Simple_repeat 3 44 0 4 1494 186 71 0 0 chr5 119261303 119261331 -33275928 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1494 511 304 155 10 chr5 119261349 119261555 -33275704 - B4A SINE B4 -56 236 1 4 1494 202 264 23 11 chr5 119262846 119262934 -33274325 + G-rich Low_complexity Low_complexity 5 93 0 4 1494 342 0 0 0 chr5 119263423 119263461 -33273798 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1494 593 230 12 172 chr5 119263480 119263811 -33273448 - B4 SINE B4 -14 278 1 4 1494 219 69 0 0 chr5 119264337 119264366 -33272893 + (TGGGGG)n Simple_repeat Simple_repeat 6 34 0 4 1494 248 329 92 35 chr5 119264957 119265130 -33272129 - MIR SINE MIR -70 192 10 4 1494 1384 92 0 5 chr5 119266894 119267079 -33270180 - B2_Mm2 SINE B2 -10 185 2 4 1494 867 286 17 25 chr5 119267363 119267600 -33269659 + B4 SINE B4 50 284 -8 4 1494 228 35 0 0 chr5 119267868 119267897 -33269362 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 4 1494 370 296 9 9 chr5 119267992 119268101 -33269158 - ORR1E LTR MaLR -248 111 3 4 1494 383 309 5 38 chr5 119268898 119269017 -33268242 + (TCCA)n Simple_repeat Simple_repeat 3 115 0 4 1494 219 114 0 0 chr5 119269017 119269052 -33268207 + (CACG)n Simple_repeat Simple_repeat 1 35 0 4 1494 383 309 5 38 chr5 119269052 119269220 -33268039 + (TCCA)n Simple_repeat Simple_repeat 1 162 0 4 1494 1338 99 17 0 chr5 119269644 119269825 -33267434 + B2_Mm2 SINE B2 2 185 -10 4 1494 181 349 24 24 chr5 119270518 119270603 -33266656 - MIRb SINE MIR -121 147 63 4 1494 775 153 0 38 chr5 119271080 119271263 -33265996 + CT-rich Low_complexity Low_complexity 3 178 0 4 1494 678 288 12 141 chr5 119271316 119271571 -33265688 - ID_B1 SINE B4 0 224 3 4 1494 590 205 0 9 chr5 119272110 119272223 -33265036 - MTEb LTR MaLR 0 379 268 4 1494 257 246 0 17 chr5 119272310 119272368 -33264891 - MTEb LTR MaLR -59 320 264 4 1494 262 279 50 47 chr5 119272404 119272536 -33264723 - MTEa LTR MaLR -56 323 182 4 1494 253 204 18 36 chr5 119272510 119272566 -33264693 - MTE2b LTR MaLR -60 319 265 4 1494 1589 215 15 15 chr5 119272554 119272880 -33264379 - MTE2b LTR MaLR -53 326 1 4 1494 21 0 0 0 chr5 119273001 119273022 -33264237 + AT_rich Low_complexity Low_complexity 1 21 0 4 1494 532 266 0 0 chr5 119273033 119273146 -33264113 + PB1D10 SINE Alu 5 117 0 4 1494 2206 250 136 23 chr5 119273252 119273916 -33263343 - RMER13A LTR ERVK -119 741 3 4 1494 231 337 21 21 chr5 119273947 119274044 -33263215 - MTEa LTR MaLR -282 97 1 4 1494 574 173 75 8 chr5 119274392 119274526 -33262733 - B1F SINE Alu 0 149 7 4 1495 248 259 49 0 chr5 119275608 119275689 -33261570 + L1MC5 LINE L1 7290 7374 -587 4 1495 340 224 33 9 chr5 119275980 119276085 -33261174 - PB1D10 SINE Alu -2 125 4 4 1495 291 227 45 0 chr5 119276136 119276235 -33261024 + G-rich Low_complexity Low_complexity 1 103 0 4 1495 922 193 11 11 chr5 119276293 119276471 -33260788 + URR1A DNA MER1_type 1 178 -48 4 1495 1181 218 5 0 chr5 119276501 119276712 -33260547 - B3 SINE B2 0 216 5 4 1495 384 292 71 0 chr5 119276887 119277000 -33260259 - MLT2D LTR ERVL -123 291 171 4 1495 281 161 145 0 chr5 119277188 119277250 -33260009 + B2_Mm2 SINE B2 1 71 -124 4 1495 306 0 0 0 chr5 119277504 119277538 -33259721 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1495 276 30 0 0 chr5 119277980 119278013 -33259246 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4 1495 711 211 45 8 chr5 119278225 119278359 -33258900 - B1_Mur1 SINE Alu -10 139 1 4 1495 333 256 0 25 chr5 119278414 119278494 -33258765 + B4 SINE B4 215 292 0 4 1495 381 93 0 0 chr5 119278520 119278574 -33258685 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1495 348 343 27 27 chr5 119278836 119278983 -33258276 - MLT1C LTR MaLR -314 153 7 4 1495 207 139 0 0 chr5 119279974 119280010 -33257249 + (CAT)n Simple_repeat Simple_repeat 3 38 0 4 1495 544 262 49 0 chr5 119280159 119280281 -33256978 - RSINE1 SINE B4 -35 130 3 4 1495 315 71 0 0 chr5 119280697 119280739 -33256520 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 4 1495 998 132 188 10 chr5 119280839 119280960 -33256299 + URR1A DNA MER1_type 1 142 -84 4 1495 802 87 31 0 chr5 119280960 119281087 -33256172 + (CATATA)n Simple_repeat Simple_repeat 2 132 0 4 1495 998 132 188 10 chr5 119281087 119281157 -33256102 + URR1A DNA MER1_type 143 225 -1 4 1495 192 96 18 55 chr5 119281175 119281230 -33256029 + T-rich Low_complexity Low_complexity 2 54 0 4 1495 1674 42 0 0 chr5 119282164 119282357 -33254902 - B2_Mm1t SINE B2 0 193 1 4 1495 861 239 114 5 chr5 119283104 119283306 -33253953 + B4A SINE B4 1 224 -68 4 1495 337 129 29 0 chr5 119283387 119283457 -33253802 + (CA)n Simple_repeat Simple_repeat 2 73 0 4 1495 628 296 6 26 chr5 119283535 119283691 -33253568 + RSINE1 SINE B4 4 156 -9 4 1495 981 257 132 19 chr5 119284244 119284554 -33252705 + ORR1E LTR MaLR 10 354 -5 4 1495 314 307 79 103 chr5 119284758 119285136 -33252123 + L2b LINE L2 2992 3360 -15 4 1495 200 361 10 0 chr5 119285598 119285695 -33251564 - MIR SINE MIR -56 206 109 4 1495 594 0 0 0 chr5 119285962 119286028 -33251231 + (CAG)n Simple_repeat Simple_repeat 2 67 0 4 1495 211 234 21 0 chr5 119286062 119286109 -33251150 - MIR SINE MIR -79 183 136 4 1495 1255 198 70 194 chr5 119286116 119286331 -33250928 - MTC LTR MaLR -68 353 209 4 1495 1091 97 14 0 chr5 119286331 119286476 -33250783 - B1_Mus1 SINE Alu -1 147 1 4 1495 1255 198 70 194 chr5 119286476 119286661 -33250598 - MTC LTR MaLR -213 208 3 4 1495 182 174 65 0 chr5 119286663 119286709 -33250550 - MIRc SINE MIR -116 152 104 4 1495 306 302 110 32 chr5 119286753 119286907 -33250352 - MLT1C LTR MaLR -38 429 264 4 1495 647 327 33 72 chr5 119286908 119287270 -33249989 - ORR1D2 LTR MaLR -18 352 5 4 1495 334 319 79 14 chr5 119287341 119287481 -33249778 - B1F2 SINE Alu 0 149 1 4 1495 634 296 56 6 chr5 119287481 119287560 -33249699 - ID SINE ID -136 88 1 4 1495 523 219 206 32 chr5 119288280 119288469 -33248790 - ID_B1 SINE B4 -2 222 1 4 1495 1224 227 17 40 chr5 119289027 119289325 -33247934 + B4A SINE B4 2 292 0 4 1495 511 352 6 0 chr5 119289339 119289518 -33247741 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1495 383 241 17 22 chr5 119289551 119289729 -33247530 + (CATA)n Simple_repeat Simple_repeat 2 178 0 4 1495 785 232 115 74 chr5 119289894 119290206 -33247053 - ORR1E LTR MaLR -19 340 16 4 1495 555 293 16 87 chr5 119290260 119290443 -33246816 - B3A SINE B2 -28 170 1 4 1495 1148 74 61 6 chr5 119290456 119290620 -33246639 - B2_Mm2 SINE B2 -21 174 2 4 1495 1057 289 51 74 chr5 119291876 119292268 -33244991 + MER121 Unknown Unknown 13 395 -17 4 1495 419 217 0 6 chr5 119292604 119292762 -33244497 + GA-rich Low_complexity Low_complexity 1 157 0 4 1495 333 260 44 102 chr5 119292819 119292956 -33244303 - B4A SINE B4 -23 269 141 4 1495 611 237 6 0 chr5 119293681 119293858 -33243401 + (TCCA)n Simple_repeat Simple_repeat 2 179 0 4 1495 804 181 0 0 chr5 119293893 119294059 -33243200 + (TCCA)n Simple_repeat Simple_repeat 1 166 0 4 1495 495 178 0 0 chr5 119294760 119294861 -33242398 + (TGGA)n Simple_repeat Simple_repeat 3 103 0 4 1495 1065 145 0 0 chr5 119294866 119295045 -33242214 + (TGGG)n Simple_repeat Simple_repeat 2 180 0 4 1495 994 275 53 46 chr5 119295234 119295361 -33241898 - B4A SINE B4 -4 288 165 4 1495 2051 84 104 0 chr5 119295361 119295659 -33241600 - ORR1A4 LTR MaLR 0 329 1 4 1495 994 275 53 46 chr5 119295659 119295813 -33241446 - B4A SINE B4 -128 164 5 4 1495 591 208 0 36 chr5 119296459 119296569 -33240690 + PB1D10 SINE Alu 1 106 -11 4 1495 406 299 72 29 chr5 119296569 119296595 -33240664 + ID_B1 SINE B4 82 223 -1 4 1495 615 276 29 68 chr5 119296598 119296804 -33240455 + B3A SINE B2 1 198 0 4 1495 203 296 40 40 chr5 119297192 119297266 -33239993 + MIR3 SINE MIR 93 166 -42 4 1495 800 287 36 18 chr5 119297269 119297489 -33239770 + MER58A DNA MER1_type 1 224 0 4 1495 264 212 0 0 chr5 119298556 119298622 -33238637 + GA-rich Low_complexity Low_complexity 1 66 0 4 1495 22 0 0 0 chr5 119298649 119298671 -33238588 + AT_rich Low_complexity Low_complexity 1 22 0 4 1495 602 321 42 16 chr5 119299195 119299216 -33238043 - B3A SINE B2 0 198 173 4 1495 282 29 0 0 chr5 119299216 119299251 -33238008 + (TG)n Simple_repeat Simple_repeat 1 35 0 4 1495 602 321 42 16 chr5 119299251 119299422 -33237837 - B3A SINE B2 -26 172 1 4 1495 189 0 0 0 chr5 119299596 119299617 -33237642 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1495 272 338 52 84 chr5 119299617 119299772 -33237487 - MLT1B LTR MaLR -25 365 216 4 1495 870 219 6 0 chr5 119300205 119300369 -33236890 + B3A SINE B2 2 166 -32 4 1495 212 0 36 0 chr5 119300525 119300553 -33236706 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1495 877 243 63 50 chr5 119301127 119301348 -33235911 - B4A SINE B4 -64 228 5 5 1495 323 201 108 30 chr5 119302435 119302540 -33234719 + MLT1A1 LTR MaLR 257 408 0 5 1495 1178 97 22 17 chr5 119302572 119302750 -33234509 + B2_Mm2 SINE B2 1 179 -16 5 1495 1582 69 0 5 chr5 119302937 119303141 -33234118 - MTC LTR MaLR -18 403 201 5 1495 1221 112 0 0 chr5 119303141 119303501 -33233758 + (TTTC)n Simple_repeat Simple_repeat 1 360 0 5 1495 219 69 0 0 chr5 119303523 119303552 -33233707 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 5 1495 1250 120 21 5 chr5 119303552 119303744 -33233515 - B2_Mm2 SINE B2 0 195 1 5 1495 1459 118 23 5 chr5 119303744 119303962 -33233297 - MTC LTR MaLR -199 222 1 5 1495 348 24 0 0 chr5 119304123 119304164 -33233095 + (CCCCCT)n Simple_repeat Simple_repeat 5 45 0 5 1495 261 0 0 0 chr5 119304736 119304765 -33232494 + (GGGGA)n Simple_repeat Simple_repeat 4 32 0 5 1495 282 362 17 12 chr5 119304925 119305073 -33232186 + L2b LINE L2 2966 3115 -260 5 1495 301 222 32 0 chr5 119305211 119305274 -33231985 - MIRc SINE MIR -119 149 85 5 1495 240 302 10 50 chr5 119305708 119305809 -33231450 + MLT1K LTR MaLR 416 512 -83 5 1495 274 353 78 59 chr5 119306104 119306375 -33230884 + ORR1C2 LTR MaLR 104 379 -5 5 1495 624 14 0 0 chr5 119306466 119306539 -33230720 + (TCC)n Simple_repeat Simple_repeat 1 73 0 5 1495 239 54 16 82 chr5 119306667 119306728 -33230531 + A-rich Low_complexity Low_complexity 3 59 0 5 1495 513 0 0 0 chr5 119308103 119308160 -33229099 + (TC)n Simple_repeat Simple_repeat 2 58 0 5 1495 245 338 13 13 chr5 119308166 119308241 -33229018 - RSINE1 SINE B4 -82 83 9 5 1495 863 121 7 0 chr5 119308629 119308769 -33228490 + (TTCC)n Simple_repeat Simple_repeat 4 144 0 5 1495 1401 52 0 0 chr5 119308775 119308948 -33228311 - B2_Mm2 SINE B2 -22 173 1 5 1495 266 281 47 35 chr5 119309075 119309160 -33228099 + MIRb SINE MIR 46 131 -137 5 1495 423 107 0 0 chr5 119309457 119309532 -33227727 + (TC)n Simple_repeat Simple_repeat 1 75 0 5 1495 699 234 17 55 chr5 119309622 119309803 -33227456 + ID_B1 SINE B4 2 175 -49 5 1495 238 292 0 0 chr5 119309860 119309932 -33227327 - ID4 SINE ID -9 74 3 5 1495 596 214 148 68 chr5 119309939 119309966 -33227293 - B3A SINE B2 -6 192 170 5 1495 192 40 0 0 chr5 119309966 119309991 -33227268 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1495 596 214 148 68 chr5 119309991 119310139 -33227120 - B3A SINE B2 -29 169 3 5 1495 219 295 49 0 chr5 119310222 119310283 -33226976 - MIR SINE MIR -59 149 86 5 1495 252 77 0 0 chr5 119310933 119310972 -33226287 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 5 1495 317 283 46 46 chr5 119311102 119311266 -33225993 + MIRc SINE MIR 73 231 -37 5 1495 823 230 87 25 chr5 119311624 119311820 -33225439 + B3 SINE B2 9 216 0 5 1495 182 253 60 48 chr5 119312837 119312920 -33224339 - MER5A DNA MER1_type -60 129 46 5 1495 464 277 203 36 chr5 119313004 119313285 -33223974 + ORR1E LTR MaLR 9 336 -23 5 1495 531 231 229 6 chr5 119314837 119314994 -33222265 + B3A SINE B2 3 194 -4 5 1495 327 85 0 0 chr5 119315084 119315131 -33222128 + (TATG)n Simple_repeat Simple_repeat 3 49 0 5 1495 700 136 134 17 chr5 119315178 119315347 -33221912 + MTC LTR MaLR 1 175 -221 5 1495 384 250 11 22 chr5 119315526 119315616 -33221643 - MER117 DNA MER1_type -23 174 86 5 1495 183 129 0 0 chr5 119315876 119315907 -33221352 + (CAGAC)n Simple_repeat Simple_repeat 2 32 0 5 1495 1506 53 37 0 chr5 119315990 119316177 -33221082 - B2_Mm2 SINE B2 -1 194 1 5 1495 213 336 117 8 chr5 119316767 119316887 -33220372 - L2a LINE L2 -342 3084 2952 5 1495 333 129 0 0 chr5 119317261 119317331 -33219928 + (T)n Simple_repeat Simple_repeat 1 70 0 5 1495 897 243 170 11 chr5 119317337 119317607 -33219652 - MTD LTR MaLR -88 331 19 5 1495 310 294 204 24 chr5 119318163 119318369 -33218890 + LTR16E1 LTR ERVL 290 532 -6 5 1495 413 245 21 0 chr5 119318438 119318530 -33218729 + B4 SINE B4 2 95 -197 5 1495 560 213 92 35 chr5 119318530 119318671 -33218588 + B3 SINE B2 1 149 -67 5 1495 441 66 0 0 chr5 119318684 119318745 -33218514 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1495 253 143 0 45 chr5 119318758 119318802 -33218457 - URR1B DNA MER1_type 0 225 184 5 1495 410 203 25 1 chr5 119318859 119318940 -33218319 - MT2A LTR ERVL -364 169 93 5 1495 677 191 0 9 chr5 119318950 119319066 -33218193 - MT2A LTR ERVL -416 117 3 5 1495 225 273 38 25 chr5 119319356 119319435 -33217824 - MIR3 SINE MIR -15 193 114 5 1495 477 0 0 0 chr5 119319794 119319847 -33217412 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 5 1495 315 336 15 0 chr5 119321219 119321353 -33215906 + (CCA)n Simple_repeat Simple_repeat 2 137 0 5 1495 423 267 32 64 chr5 119321371 119321527 -33215732 + HAL1-2a_MD LINE L1 2352 2502 -522 5 1495 183 242 161 0 chr5 119322005 119322067 -33215192 - MIRc SINE MIR -132 136 65 5 1495 248 274 15 95 chr5 119322232 119322369 -33214890 + MIRb SINE MIR 27 152 -116 5 1495 422 190 0 8 chr5 119323082 119323204 -33214055 + (CA)n Simple_repeat Simple_repeat 2 122 0 5 1495 414 261 2 2 chr5 119323276 119323677 -33213582 + (CA)n Simple_repeat Simple_repeat 1 401 0 5 1495 240 35 0 0 chr5 119323726 119323755 -33213504 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1495 444 37 0 0 chr5 119324632 119324686 -33212573 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 5 1495 210 143 0 0 chr5 119324691 119324726 -33212533 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1495 198 0 0 0 chr5 119325262 119325284 -33211975 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 5 1495 420 20 0 0 chr5 119326314 119326363 -33210896 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1495 405 188 0 0 chr5 119326539 119326619 -33210640 + A-rich Low_complexity Low_complexity 1 80 0 5 1495 21 0 0 0 chr5 119327910 119327931 -33209328 + GC_rich Low_complexity Low_complexity 1 21 0 5 1495 504 32 0 0 chr5 119328105 119328167 -33209092 + (TC)n Simple_repeat Simple_repeat 1 62 0 5 1495 214 50 0 48 chr5 119328545 119328587 -33208672 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1495 33 0 0 0 chr5 119329954 119329987 -33207272 + AT_rich Low_complexity Low_complexity 1 33 0 5 1495 387 0 0 0 chr5 119330908 119330951 -33206308 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1495 353 312 36 7 chr5 119331188 119331327 -33205932 - B1F1 SINE Alu -1 148 6 5 1495 568 217 147 0 chr5 119331621 119331764 -33205495 - RSINE1 SINE B4 -1 164 1 5 1495 346 260 39 20 chr5 119332592 119332694 -33204565 - B4 SINE B4 -1 291 188 5 1495 650 226 72 7 chr5 119332786 119332924 -33204335 + B1_Mur2 SINE Alu 1 147 -2 5 1495 2688 76 9 141 chr5 119333378 119333583 -33203676 + MTB LTR MaLR 1 193 -207 5 1495 3370 29 0 0 chr5 119333583 119333968 -33203291 + L1Md_T LINE L1 6197 6581 -1 5 1495 2688 76 9 141 chr5 119333968 119334223 -33203036 + MTB LTR MaLR 194 400 0 5 1495 451 256 181 0 chr5 119334228 119334361 -33202898 + ID_B1 SINE B4 66 222 -2 5 1495 482 282 57 74 chr5 119334506 119334736 -33202523 - MTE2a LTR MaLR 0 379 154 5 1495 1261 169 4 20 chr5 119335192 119335731 -33201528 + (TCCA)n Simple_repeat Simple_repeat 1 530 0 5 1495 360 0 0 0 chr5 119335808 119335848 -33201411 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1495 354 253 10 40 chr5 119336832 119336850 -33200409 - BC1_Mm scRNA scRNA -54 98 3 5 1495 422 175 37 12 chr5 119336850 119336931 -33200328 - B4 SINE B4 -207 85 3 5 1495 654 61 0 0 chr5 119336935 119337017 -33200242 - B1_Mus2 SINE Alu -65 82 1 5 1495 215 31 31 0 chr5 119337038 119337070 -33200189 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 5 1495 651 113 0 40 chr5 119337267 119337368 -33199891 + B1_Mus2 SINE Alu 51 147 0 5 1495 4417 8 0 2 chr5 119337437 119337919 -33199340 - LTRIS_Mm LTR ERV1 -1 481 1 5 1495 231 36 0 0 chr5 119337919 119337947 -33199312 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5 1495 565 252 0 97 chr5 119337947 119338101 -33199158 - B1_Mur3 SINE Alu -10 139 1 5 1495 391 324 0 0 chr5 119338248 119338350 -33198909 + PB1D10 SINE Alu 8 109 -8 5 1495 1378 70 43 0 chr5 119338660 119338845 -33198414 + B2_Mm2 SINE B2 2 194 -1 5 1495 275 344 76 90 chr5 119339029 119339240 -33198019 + MLT1H1 LTR MaLR 256 463 -92 5 1495 372 287 0 0 chr5 119339360 119339454 -33197805 + MER117 DNA MER1_type 50 143 -54 5 1495 320 287 76 23 chr5 119339925 119340057 -33197202 - MER117 DNA MER1_type -21 176 38 5 1495 729 235 0 0 chr5 119340286 119340465 -33196794 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1495 856 257 38 86 chr5 119340498 119340788 -33196471 - B4A SINE B4 -16 276 1 5 1495 252 246 18 0 chr5 119340939 119340996 -33196263 + B4 SINE B4 15 72 -220 5 1495 213 39 0 0 chr5 119341008 119341034 -33196225 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 5 1495 397 272 38 70 chr5 119341606 119341764 -33195495 + MER121 Unknown Unknown 114 266 -146 5 1495 519 31 0 0 chr5 119341765 119341830 -33195429 + (TG)n Simple_repeat Simple_repeat 1 65 0 5 1495 411 56 0 0 chr5 119341830 119341884 -33195375 + (GA)n Simple_repeat Simple_repeat 2 55 0 5 1495 289 246 17 0 chr5 119341885 119342003 -33195256 + (TATG)n Simple_repeat Simple_repeat 1 120 0 5 1495 273 265 15 0 chr5 119342055 119342123 -33195136 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1495 513 230 11 27 chr5 119342132 119342315 -33194944 + (TATG)n Simple_repeat Simple_repeat 1 180 0 5 1495 616 215 60 30 chr5 119342461 119342595 -33194664 - MTE2a LTR MaLR 0 379 242 5 1495 766 295 89 73 chr5 119342669 119343038 -33194221 + MTE2a LTR MaLR 1 375 -4 5 1495 239 241 658 35 chr5 119343427 119343550 -33193709 + RMER30 DNA MER1_type 1 200 -2 5 1495 509 0 16 0 chr5 119344142 119344203 -33193056 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 6 1495 1231 55 0 0 chr5 119344203 119344349 -33192910 - B1_Mus2 SINE Alu -1 146 1 6 1495 931 53 34 10 chr5 119344352 119344561 -33192698 + (TCTA)n Simple_repeat Simple_repeat 1 213 0 6 1495 904 217 105 30 chr5 119344571 119344858 -33192401 - BGLII_B LTR ERVK -61 380 60 6 1495 360 0 0 0 chr5 119344858 119344898 -33192361 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1495 313 275 134 65 chr5 119344898 119344935 -33192324 - BGLII_B LTR ERVK -394 59 20 6 1495 274 170 75 9 chr5 119345077 119345184 -33192075 + (TAGA)n Simple_repeat Simple_repeat 2 115 0 6 1495 334 227 53 0 chr5 119345211 119345343 -33191916 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 6 1495 367 295 43 43 chr5 119345457 119345666 -33191593 - RMER12 LTR ERVK -344 978 770 6 1495 370 153 0 77 chr5 119345693 119345771 -33191488 + HAL1-3A_ME LINE L1 1976 2047 -811 6 1495 2208 157 48 25 chr5 119345797 119346195 -33191064 - MTB_Mm LTR MaLR 0 407 1 6 1495 21 0 0 0 chr5 119347013 119347034 -33190225 + GC_rich Low_complexity Low_complexity 1 21 0 6 1495 309 48 0 67 chr5 119347496 119347541 -33189718 - HAL1-3A_ME LINE L1 -844 2014 1973 6 1495 475 140 0 77 chr5 119347545 119347739 -33189520 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1495 636 134 4 61 chr5 119347765 119348046 -33189213 + (TG)n Simple_repeat Simple_repeat 1 264 0 6 1495 437 294 7 14 chr5 119348046 119348191 -33189068 - Lx8 LINE L1 -811 6662 6519 6 1495 617 256 183 13 chr5 119348206 119348517 -33188742 + Lx8 LINE L1 7070 7443 -30 6 1495 387 146 52 26 chr5 119349312 119349467 -33187792 + (TCTCTG)n Simple_repeat Simple_repeat 4 162 0 6 1495 288 0 0 0 chr5 119349572 119349604 -33187655 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1495 338 311 95 72 chr5 119349622 119349844 -33187415 - L1ME2 LINE L1 -72 6092 5866 6 1495 571 265 145 0 chr5 119350289 119350455 -33186804 - MTEb LTR MaLR -13 366 177 6 1495 270 73 0 0 chr5 119350459 119350500 -33186759 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 6 1495 1314 195 35 15 chr5 119350712 119350972 -33186287 - Lx5 LINE L1 0 7050 6786 6 1495 314 177 36 60 chr5 119350978 119351062 -33186197 + L1_Mur2 LINE L1 3820 3901 -1976 6 1495 506 204 8 110 chr5 119351062 119351189 -33186070 - MTEb LTR MaLR -194 185 72 6 1495 2078 173 87 5 chr5 119351261 119351650 -33185609 - MTC LTR MaLR 0 421 1 6 1495 660 305 68 65 chr5 119352404 119352667 -33184592 + MTD LTR MaLR 1 264 -155 6 1495 429 115 0 0 chr5 119352827 119352905 -33184354 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1495 448 354 41 0 chr5 119352908 119353055 -33184204 - B3A SINE B2 -41 157 5 6 1495 817 223 139 10 chr5 119353651 119353859 -33183400 - ORR1E LTR MaLR -122 237 3 6 1495 256 260 27 14 chr5 119353864 119353938 -33183321 - Charlie12 DNA MER1_type -2792 81 7 6 1495 2685 77 8 55 chr5 119354235 119354618 -33182641 - RLTR8 LTR ERVK 0 365 1 6 1495 413 356 95 45 chr5 119354761 119355120 -33182139 - LTR16B1 LTR ERVL -100 380 4 6 1495 265 156 89 0 chr5 119355703 119355793 -33181466 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 6 1495 279 54 0 0 chr5 119355849 119355886 -33181373 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 6 1495 258 239 0 0 chr5 119356248 119356319 -33180940 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 6 1495 223 256 13 19 chr5 119356336 119356495 -33180764 + (ATGGTG)n Simple_repeat Simple_repeat 1 158 0 6 1495 345 250 0 0 chr5 119356552 119356676 -33180583 + (TGG)n Simple_repeat Simple_repeat 2 125 0 6 1495 612 241 104 38 chr5 119357245 119357510 -33179749 + MTD LTR MaLR 1 270 -151 6 1495 315 278 0 40 chr5 119357546 119357621 -33179638 - ID4 SINE ID -11 72 1 6 1495 1141 77 4 8 chr5 119357642 119357884 -33179375 + (TG)n Simple_repeat Simple_repeat 1 240 0 6 1495 222 37 0 0 chr5 119358572 119358599 -33178660 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1495 315 0 0 0 chr5 119358776 119358811 -33178448 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 6 1495 1243 68 0 6 chr5 119358811 119358973 -33178286 - B2_Mm2 SINE B2 -34 161 1 6 1495 994 245 24 181 chr5 119359203 119359712 -33177547 - RLTR11B LTR ERVK -14 439 11 6 1495 420 200 25 0 chr5 119360068 119360148 -33177111 + ID4 SINE ID 2 83 0 6 1495 587 183 0 43 chr5 119360670 119360858 -33176401 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 1495 384 245 20 0 chr5 119360859 119360957 -33176302 + (TG)n Simple_repeat Simple_repeat 2 101 0 6 1495 493 215 0 22 chr5 119360966 119361147 -33176112 + (TATG)n Simple_repeat Simple_repeat 2 178 0 6 1495 286 302 17 0 chr5 119361148 119361264 -33175995 + (TG)n Simple_repeat Simple_repeat 1 118 0 6 1495 289 226 17 0 chr5 119361289 119361404 -33175855 + (TATG)n Simple_repeat Simple_repeat 2 118 0 6 1495 206 255 0 0 chr5 119361404 119361451 -33175808 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 6 1495 573 235 0 0 chr5 119361453 119361632 -33175627 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1495 347 330 31 66 chr5 119361896 119362123 -33175136 + L2b LINE L2 2930 3148 -227 6 1495 297 183 0 143 chr5 119362575 119362645 -33174614 + B3A SINE B2 5 64 -134 6 1495 353 259 181 13 chr5 119362754 119362903 -33174356 - MLT1H LTR MaLR 0 549 376 6 1495 225 275 57 41 chr5 119363077 119363227 -33174032 - MIRc SINE MIR -49 227 74 6 1495 591 294 57 57 chr5 119363289 119363516 -33173743 - B4 SINE B4 -64 228 2 6 1495 321 216 13 13 chr5 119363529 119363604 -33173655 - PB1D10 SINE Alu -8 109 35 6 1495 499 250 113 0 chr5 119365019 119365143 -33172116 + RSINE1 SINE B4 16 153 -12 6 1495 267 31 0 0 chr5 119365177 119365209 -33172050 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1495 414 0 0 0 chr5 119365214 119365260 -33171999 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 6 1495 769 179 0 43 chr5 119365816 119365956 -33171303 + B3A SINE B2 1 134 -64 6 1495 195 42 0 0 chr5 119366430 119366454 -33170805 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1495 573 51 8 78 chr5 119366456 119366584 -33170675 + (CAGAGA)n Simple_repeat Simple_repeat 2 120 0 6 1495 261 0 0 0 chr5 119366929 119366958 -33170301 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 6 1495 1026 120 0 0 chr5 119366958 119367090 -33170169 - B1_Mus1 SINE Alu -11 137 6 6 1495 407 269 46 0 chr5 119367096 119367204 -33170055 - PB1D7 SINE Alu -1 119 7 6 1495 347 366 9 0 chr5 119367109 119367221 -33170038 - ID_B1 SINE B4 -41 183 71 6 1495 367 285 7 26 chr5 119367243 119367340 -33169919 + polypyrimidine Low_complexity Low_complexity 58 152 0 6 1495 183 42 0 0 chr5 119367340 119367364 -33169895 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 6 1495 367 285 7 26 chr5 119367364 119367421 -33169838 + polypyrimidine Low_complexity Low_complexity 1 57 0 6 1495 300 190 34 8 chr5 119367428 119367545 -33169714 + CT-rich Low_complexity Low_complexity 3 122 0 6 1495 450 0 0 0 chr5 119367703 119367753 -33169506 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1495 399 335 35 12 chr5 119367902 119368074 -33169185 + Lx9 LINE L1 7157 7332 -312 6 1495 273 286 155 0 chr5 119368157 119368241 -33169018 - RSINE1 SINE B4 -65 100 4 6 1495 22 0 0 0 chr5 119368268 119368290 -33168969 + AT_rich Low_complexity Low_complexity 1 22 0 6 1495 1032 188 38 10 chr5 119368292 119368501 -33168758 + B3 SINE B2 1 215 -1 6 1495 595 266 64 0 chr5 119368621 119368794 -33168465 - Lx8 LINE L1 -136 7337 7154 6 1495 273 89 0 0 chr5 119368986 119369031 -33168228 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 6 1495 241 374 58 34 chr5 119370131 119370422 -33166837 + L2a LINE L2 2727 3024 -395 6 1495 194 349 48 0 chr5 119370595 119370678 -33166581 + L2a LINE L2 3317 3403 -23 6 1495 1088 246 86 0 chr5 119371013 119371269 -33165990 + B4 SINE B4 1 278 -14 6 1495 285 29 0 0 chr5 119371295 119371329 -33165930 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1495 996 282 11 18 chr5 119372029 119372311 -33164948 - B4A SINE B4 -12 280 1 6 1495 362 21 21 0 chr5 119372317 119372364 -33164895 + (TTA)n Simple_repeat Simple_repeat 1 48 0 6 1495 274 244 88 25 chr5 119372372 119372452 -33164807 - B1F1 SINE Alu -33 116 32 6 1495 734 247 128 5 chr5 119372879 119373066 -33164193 + ID_B1 SINE B4 10 219 -5 6 1495 219 297 40 26 chr5 119373104 119373180 -33164079 - MIRb SINE MIR -185 83 7 6 1495 336 301 9 72 chr5 119373284 119373395 -33163864 + MLT1M LTR MaLR 94 197 -475 6 1495 1397 246 89 14 chr5 119373539 119373897 -33163362 - RLTR18B LTR ERVK -5 507 123 6 1495 860 114 7 0 chr5 119373988 119374128 -33163131 + (GAA)n Simple_repeat Simple_repeat 1 141 0 6 1495 567 241 116 144 chr5 119374303 119374691 -33162568 + MTE2a LTR MaLR 3 379 0 6 1495 506 275 91 28 chr5 119375256 119375432 -33161827 - ORR1E LTR MaLR -2 357 171 6 1495 259 176 40 13 chr5 119375433 119375508 -33161751 + GA-rich Low_complexity Low_complexity 5 81 0 6 1495 734 265 5 21 chr5 119375508 119375701 -33161558 - ORR1E LTR MaLR -169 190 1 6 1495 511 250 168 77 chr5 119375701 119375909 -33161350 + MTEa LTR MaLR 16 242 -137 6 1495 324 0 0 0 chr5 119375987 119376023 -33161236 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1495 253 225 0 22 chr5 119376574 119376665 -33160594 + CT-rich Low_complexity Low_complexity 1 89 0 6 1495 196 30 61 0 chr5 119376677 119376710 -33160549 + (GA)n Simple_repeat Simple_repeat 1 35 0 6 1495 1415 49 0 3 chr5 119376710 119376997 -33160262 + (GAA)n Simple_repeat Simple_repeat 1 285 0 6 1495 699 135 23 0 chr5 119376997 119377130 -33160129 + GA-rich Low_complexity Low_complexity 2 137 0 6 1495 662 270 39 129 chr5 119377158 119377468 -33159791 - B4 SINE B4 -10 282 1 6 1495 407 303 47 11 chr5 119377661 119377851 -33159408 - L1MB4 LINE L1 -186 5994 5798 6 1495 208 229 0 40 chr5 119378244 119378294 -33158965 + MIRc SINE MIR 120 167 -101 6 1495 567 0 0 0 chr5 119378787 119378850 -33158409 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 1495 1022 295 32 18 chr5 119378862 119379145 -33158114 - B4A SINE B4 0 292 6 7 1495 455 188 28 56 chr5 119379198 119379305 -33157954 + B3A SINE B2 95 198 0 7 1495 656 107 10 0 chr5 119380542 119380645 -33156614 + (GGA)n Simple_repeat Simple_repeat 1 104 0 7 1495 315 290 32 16 chr5 119380789 119380915 -33156344 + Arthur1B DNA Tip100 19 146 -1079 7 1495 531 0 0 0 chr5 119380986 119381045 -33156214 + (TC)n Simple_repeat Simple_repeat 2 60 0 7 1495 252 0 0 0 chr5 119381045 119381072 -33156187 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1495 496 223 11 17 chr5 119381754 119381932 -33155327 + CT-rich Low_complexity Low_complexity 1 177 0 7 1495 252 0 0 0 chr5 119382196 119382224 -33155035 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 7 1495 180 77 0 0 chr5 119382395 119382421 -33154838 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 7 1495 310 333 36 53 chr5 119382559 119382779 -33154480 + MIR3 SINE MIR 1 217 -45 7 1495 258 200 99 12 chr5 119382922 119383003 -33154256 - ORR1E LTR MaLR -56 323 236 7 1495 885 176 0 0 chr5 119383088 119383264 -33153995 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 7 1495 787 276 8 8 chr5 119383318 119383677 -33153582 + (TCCA)n Simple_repeat Simple_repeat 1 359 0 7 1495 25 51 0 0 chr5 119384600 119384639 -33152620 + AT_rich Low_complexity Low_complexity 1 39 0 7 1495 1240 196 225 6 chr5 119384890 119385219 -33152040 + MTD LTR MaLR 19 419 0 7 1495 278 330 60 0 chr5 119385313 119385413 -33151846 - ORR1E LTR MaLR -248 111 6 7 1495 35 63 0 0 chr5 119385883 119385946 -33151313 + AT_rich Low_complexity Low_complexity 1 63 0 7 1495 267 79 0 0 chr5 119386073 119386111 -33151148 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1495 298 269 252 31 chr5 119386111 119386337 -33150922 + MLT1C LTR MaLR 191 466 -1 7 1495 627 236 77 77 chr5 119386504 119386724 -33150535 - Charlie8 DNA MER1_type -2142 286 67 7 1495 405 0 0 0 chr5 119386821 119386866 -33150393 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1495 200 326 38 122 chr5 119387251 119387464 -33149795 - L2b LINE L2 -3 3372 3178 7 1495 1820 197 53 11 chr5 119388134 119388489 -33148770 - MTD LTR MaLR -40 379 10 7 1495 310 285 16 31 chr5 119388500 119388627 -33148632 + GA-rich Low_complexity Low_complexity 2 126 0 7 1495 625 241 43 0 chr5 119389120 119389261 -33147998 + B1_Mur1 SINE Alu 1 147 -2 7 1495 216 303 14 43 chr5 119389356 119389425 -33147834 - MIRb SINE MIR -71 197 131 7 1495 304 364 150 41 chr5 119390095 119390341 -33146918 + LTR16A LTR ERVL 3 275 -176 7 1495 312 296 107 41 chr5 119390365 119390562 -33146697 + ORR1E LTR MaLR 1 210 -149 7 1495 445 279 152 9 chr5 119390869 119391079 -33146180 - MLT1J LTR MaLR -136 376 137 7 1495 684 173 0 0 chr5 119391618 119391797 -33145462 + GA-rich Low_complexity Low_complexity 1 179 0 7 1495 1657 225 40 9 chr5 119392482 119392831 -33144428 + MTE2b LTR MaLR 18 377 -2 7 1495 539 53 62 0 chr5 119392831 119392944 -33144315 + (GA)n Simple_repeat Simple_repeat 1 120 0 7 1495 737 263 198 0 chr5 119392944 119393176 -33144083 + B4 SINE B4 7 284 -8 7 1495 886 162 6 6 chr5 119393408 119393588 -33143671 + CT-rich Low_complexity Low_complexity 1 180 0 7 1495 605 219 0 6 chr5 119393600 119393761 -33143498 + CT-rich Low_complexity Low_complexity 3 162 0 7 1495 255 330 36 64 chr5 119393841 119393951 -33143308 - PB1 SINE Alu 0 127 21 7 1495 325 218 56 47 chr5 119393963 119394081 -33143178 - PB1D7 SINE Alu 0 120 5 7 1495 180 111 0 0 chr5 119394795 119394822 -33142437 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1495 624 164 29 4 chr5 119395262 119395511 -33141748 + (TG)n Simple_repeat Simple_repeat 1 255 0 7 1495 480 272 361 11 chr5 119395594 119395863 -33141396 + ORR1D2 LTR MaLR 1 363 -7 7 1495 455 267 80 15 chr5 119395873 119396010 -33141249 - B4A SINE B4 -63 229 84 7 1495 459 0 0 0 chr5 119396599 119396650 -33140609 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1495 363 275 81 24 chr5 119397040 119397163 -33140096 - B4A SINE B4 0 292 163 7 1495 243 79 0 0 chr5 119397281 119397319 -33139940 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1495 328 272 66 44 chr5 119397319 119397546 -33139713 - L1MB1 LINE L1 -3 6186 5955 7 1495 217 305 11 89 chr5 119397554 119397644 -33139615 - ID SINE ID -141 83 1 7 1495 404 310 38 24 chr5 119397834 119398122 -33139137 - L1MB1 LINE L1 -781 5359 5068 7 1495 697 255 76 29 chr5 119398179 119398389 -33138870 - ID_B1 SINE B4 -3 221 2 7 1495 266 405 93 5 chr5 119398492 119398708 -33138551 - LTR16C LTR ERVL -114 375 141 7 1495 207 0 0 0 chr5 119399263 119399286 -33137973 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1495 300 27 0 0 chr5 119399286 119399322 -33137937 + (GA)n Simple_repeat Simple_repeat 1 37 0 7 1495 628 180 0 22 chr5 119399353 119399535 -33137724 + (TG)n Simple_repeat Simple_repeat 2 179 0 7 1495 180 0 0 0 chr5 119399593 119399613 -33137646 + (TG)n Simple_repeat Simple_repeat 2 21 0 7 1495 193 250 0 0 chr5 119400118 119400166 -33137093 - MIR SINE MIR -126 136 89 7 1495 417 229 51 17 chr5 119400291 119400425 -33136834 + B4 SINE B4 76 274 -18 7 1495 192 200 0 0 chr5 119400911 119400951 -33136308 + T-rich Low_complexity Low_complexity 1 40 0 7 1495 1217 43 0 0 chr5 119401578 119401717 -33135542 - B1_Mm SINE Alu -8 139 1 7 1495 273 285 124 51 chr5 119401802 119401939 -33135320 - MER20 DNA MER1_type -33 186 40 7 1495 525 118 0 0 chr5 119402032 119402108 -33135151 + B4A SINE B4 196 271 -21 7 1495 290 348 45 0 chr5 119402198 119402310 -33134949 - L2a LINE L2 -252 3174 3058 7 1495 262 295 77 57 chr5 119402347 119402595 -33134664 - L2a LINE L2 -440 2979 2727 7 1495 286 308 64 0 chr5 119403268 119403346 -33133913 + B4 SINE B4 37 119 -173 7 1495 187 371 10 20 chr5 119403366 119403465 -33133794 + MIR SINE MIR 66 163 -99 7 1495 1961 180 56 33 chr5 119403846 119404195 -33133064 - MTC LTR MaLR -14 407 50 7 1495 1877 135 62 3 chr5 119404195 119404515 -33132744 + RMER4B LTR ERVK 1 339 -246 7 1495 544 180 8 8 chr5 119404515 119404638 -33132621 + GA-rich Low_complexity Low_complexity 2 124 0 7 1495 1077 130 228 36 chr5 119404638 119404661 -33132598 + RMER4B LTR ERVK 319 339 -246 7 1495 1480 11 11 0 chr5 119404661 119404839 -33132420 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1495 1077 130 228 36 chr5 119404839 119405039 -33132220 + RMER4B LTR ERVK 340 585 0 7 1495 264 277 0 0 chr5 119405065 119405130 -33132129 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1495 584 221 7 0 chr5 119405311 119405460 -33131799 + (TATG)n Simple_repeat Simple_repeat 2 151 0 7 1495 207 236 0 35 chr5 119405526 119405583 -33131676 + GA-rich Low_complexity Low_complexity 4 58 0 7 1495 186 333 0 16 chr5 119406110 119406174 -33131085 - L3 LINE CR1 -11 4478 4416 7 1495 1200 128 133 0 chr5 119406227 119406423 -33130836 - URR1A DNA MER1_type -4 222 1 7 1496 180 0 0 0 chr5 119406618 119406638 -33130621 + (T)n Simple_repeat Simple_repeat 1 20 0 7 1496 786 241 100 17 chr5 119407327 119407540 -33129719 - B4A SINE B4 0 292 54 7 1496 923 226 62 0 chr5 119407577 119407754 -33129505 - B3 SINE B2 -28 188 1 7 1496 325 312 18 44 chr5 119407852 119407966 -33129293 + MTE2b LTR MaLR 265 375 -4 7 1496 286 214 18 0 chr5 119408045 119408101 -33129158 - PB1D10 SINE Alu -9 108 52 7 1496 201 260 139 50 chr5 119408641 119408742 -33128517 + MIR SINE MIR 22 131 -77 7 1496 336 91 0 0 chr5 119408896 119408940 -33128319 - HAL1-3A_ME LINE L1 -840 2018 1975 7 1496 280 207 16 0 chr5 119408948 119409069 -33128190 + (TG)n Simple_repeat Simple_repeat 2 124 0 7 1496 734 199 3 0 chr5 119409082 119409372 -33127887 + (TG)n Simple_repeat Simple_repeat 1 291 0 7 1496 222 234 21 0 chr5 119409505 119409552 -33127707 - L2c LINE L2 -304 3083 3036 7 1496 701 313 76 16 chr5 119409776 119410159 -33127100 - L1ME2 LINE L1 -190 5974 5569 7 1496 853 321 97 38 chr5 119411772 119412216 -33125043 + MLT1J LTR MaLR 29 498 -14 7 1496 1262 82 58 0 chr5 119412507 119412678 -33124581 + B2_Mm2 SINE B2 1 181 -14 7 1496 397 71 424 12 chr5 119412710 119412795 -33124464 + B2_Mm2 SINE B2 50 169 -26 7 1496 188 67 0 32 chr5 119412797 119412828 -33124431 + (GGA)n Simple_repeat Simple_repeat 3 32 0 7 1496 1050 111 0 27 chr5 119412834 119413019 -33124240 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1496 24 0 0 0 chr5 119413408 119413432 -33123827 + AT_rich Low_complexity Low_complexity 1 24 0 7 1496 716 318 96 44 chr5 119413682 119414162 -33123097 + LTR33A LTR ERVL 7 511 -9 7 1496 321 324 69 40 chr5 119414296 119414524 -33122735 + MIRc SINE MIR 3 242 -26 7 1496 885 299 26 22 chr5 119414547 119414776 -33122483 + B4 SINE B4 5 234 -58 7 1496 475 271 16 24 chr5 119414839 119414964 -33122295 - MTD LTR MaLR -166 253 130 7 1496 879 305 40 8 chr5 119414957 119415205 -33122054 - B4A SINE B4 -36 256 1 7 1496 257 293 17 33 chr5 119415205 119415325 -33121934 - L1MC LINE L1 -2177 5608 5491 7 1496 379 352 142 5 chr5 119415598 119415809 -33121450 + Arthur1 DNA Tip100 357 596 -3351 7 1496 391 245 0 113 chr5 119415986 119416092 -33121167 - RSINE1 SINE B4 -68 97 4 7 1496 752 227 139 29 chr5 119416301 119416546 -33120713 + B4 SINE B4 1 272 -20 7 1496 353 268 107 24 chr5 119416852 119417020 -33120239 + Arthur1 DNA Tip100 3765 3946 -1 7 1496 302 285 23 61 chr5 119417114 119417245 -33120014 - MTE2b LTR MaLR -4 375 250 7 1496 440 279 93 13 chr5 119417492 119417683 -33119576 + MIR SINE MIR 36 253 -15 7 1496 330 230 0 63 chr5 119418144 119418223 -33119036 + ID4 SINE ID 8 81 -2 7 1496 560 384 3 42 chr5 119418236 119418519 -33118740 + B4 SINE B4 20 291 -1 7 1496 243 0 0 0 chr5 119418545 119418572 -33118687 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 1496 555 242 6 11 chr5 119418960 119419140 -33118119 + C-rich Low_complexity Low_complexity 2 180 0 7 1496 351 331 14 22 chr5 119419142 119419281 -33117978 + CT-rich Low_complexity Low_complexity 2 139 0 7 1496 238 303 0 0 chr5 119419281 119419347 -33117912 - L2a LINE L2 -6 3420 3355 7 1496 704 302 50 0 chr5 119419980 119420182 -33117077 - B4 SINE B4 0 292 81 7 1496 591 185 28 9 chr5 119420187 119420296 -33116963 - B1_Mur1 SINE Alu -12 137 27 8 1496 302 317 24 12 chr5 119420265 119420348 -33116911 - B4A SINE B4 -199 93 10 7 1496 991 236 102 86 chr5 119420798 119421147 -33116112 - ORR1D2 LTR MaLR -10 384 11 8 1496 384 97 0 0 chr5 119421420 119421482 -33115777 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1496 756 324 37 15 chr5 119421496 119421629 -33115630 - B4 SINE B4 -13 279 145 8 1496 252 0 0 0 chr5 119421629 119421657 -33115602 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 8 1496 756 324 37 15 chr5 119421657 119421796 -33115463 - B4 SINE B4 -148 144 2 8 1496 271 222 0 0 chr5 119422234 119422297 -33114962 + T-rich Low_complexity Low_complexity 1 63 0 8 1496 331 321 97 38 chr5 119422508 119422778 -33114481 + B4 SINE B4 5 275 -17 8 1496 330 203 31 15 chr5 119423321 119423451 -33113808 + C-rich Low_complexity Low_complexity 4 135 0 8 1496 224 262 21 125 chr5 119423662 119423758 -33113501 + B4 SINE B4 10 95 -197 8 1496 283 292 103 58 chr5 119423672 119423828 -33113431 + B3A SINE B2 1 163 -35 8 1496 449 343 26 99 chr5 119424015 119424177 -33113082 - MER58B DNA MER1_type -14 327 171 8 1496 2486 148 37 12 chr5 119424177 119424586 -33112673 + MTC LTR MaLR 1 419 -2 8 1496 449 343 26 99 chr5 119424586 119424695 -33112564 - MER58B DNA MER1_type -171 170 76 8 1496 248 200 0 0 chr5 119424695 119424735 -33112524 + B4A SINE B4 1 40 -252 8 1496 393 99 23 55 chr5 119424744 119424872 -33112387 + A-rich Low_complexity Low_complexity 2 125 0 8 1496 270 331 179 21 chr5 119424876 119425021 -33112238 + B4A SINE B4 49 217 -75 8 1496 198 0 0 0 chr5 119425875 119425897 -33111362 + (TG)n Simple_repeat Simple_repeat 1 22 0 8 1496 226 288 41 95 chr5 119426053 119426180 -33111079 + RLTR22_Mur LTR ERVK 1306 1431 -417 8 1496 229 51 51 0 chr5 119426180 119426219 -33111040 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1496 226 288 41 95 chr5 119426219 119426260 -33110999 + RLTR22_Mur LTR ERVK 1432 1465 -383 8 1496 492 331 7 19 chr5 119426286 119426357 -33110902 - B4 SINE B4 -139 153 85 8 1496 423 0 0 0 chr5 119426357 119426404 -33110855 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1496 492 331 7 19 chr5 119426404 119426486 -33110773 - B4 SINE B4 -208 84 3 8 1496 249 354 171 9 chr5 119426626 119426837 -33110422 + LTR16C LTR ERVL 79 323 -166 8 1496 562 315 66 29 chr5 119426864 119427106 -33110153 - MLT1F2 LTR MaLR 0 560 310 8 1496 797 186 0 15 chr5 119427205 119427341 -33109918 - B1_Mur1 SINE Alu -3 146 13 8 1496 450 0 0 0 chr5 119427619 119427669 -33109590 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1496 803 254 141 8 chr5 119427784 119428018 -33109241 + B4A SINE B4 3 267 -25 8 1496 307 270 0 0 chr5 119428158 119428221 -33109038 + ID_B1 SINE B4 147 209 -15 8 1496 702 211 0 0 chr5 119428221 119428396 -33108863 + (TA)n Simple_repeat Simple_repeat 1 175 0 8 1496 243 0 0 0 chr5 119428407 119428434 -33108825 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1496 275 164 0 16 chr5 119428450 119428512 -33108747 + GA-rich Low_complexity Low_complexity 4 64 0 8 1496 1764 249 38 3 chr5 119429445 119429836 -33107423 - MTD LTR MaLR -14 405 1 8 1496 1419 255 47 28 chr5 119430090 119430167 -33107092 + MTE2b LTR MaLR 5 76 -303 8 1496 231 36 0 0 chr5 119430167 119430195 -33107064 + (G)n Simple_repeat Simple_repeat 1 28 0 8 1496 1419 255 47 28 chr5 119430195 119430480 -33106779 + MTE2b LTR MaLR 77 374 -5 8 1496 810 173 207 34 chr5 119430480 119430659 -33106600 - B3 SINE B2 -6 210 1 8 1496 256 298 104 19 chr5 119430737 119430843 -33106416 - MIRb SINE MIR -113 155 41 8 1496 229 288 103 111 chr5 119430867 119430984 -33106275 - MIRm SINE MIR -128 148 33 8 1496 335 273 0 29 chr5 119431844 119431936 -33105323 - MER58B DNA MER1_type -133 208 119 8 1496 225 0 0 0 chr5 119431936 119431961 -33105298 + (CATA)n Simple_repeat Simple_repeat 3 27 0 8 1496 802 186 273 0 chr5 119431986 119432147 -33105112 + B3 SINE B2 2 206 -10 8 1496 1080 181 64 0 chr5 119432159 119432347 -33104912 - B3 SINE B2 -15 201 2 8 1496 737 213 42 7 chr5 119432401 119432543 -33104716 + RSINE1 SINE B4 13 159 -6 8 1496 212 162 54 0 chr5 119432733 119432770 -33104489 + ID4_ SINE ID 1 39 -44 8 1496 324 0 0 0 chr5 119432881 119432917 -33104342 + (TC)n Simple_repeat Simple_repeat 1 36 0 8 1496 445 212 518 21 chr5 119432929 119433122 -33104137 - B4 SINE B4 -2 290 2 8 1496 366 23 0 0 chr5 119433176 119433219 -33104040 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1496 605 147 17 43 chr5 119433397 119433751 -33103508 + (TCTCTG)n Simple_repeat Simple_repeat 1 344 0 8 1496 441 0 0 0 chr5 119433754 119433803 -33103456 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1496 533 289 57 19 chr5 119433816 119433975 -33103284 - B4 SINE B4 -44 248 84 8 1496 566 285 58 16 chr5 119434338 119434527 -33102732 + MLT2C1 LTR ERVL 160 356 -41 8 1496 686 155 9 18 chr5 119434518 119434630 -33102629 - B1_Mur2 SINE Alu -9 140 30 8 1496 197 395 13 45 chr5 119435048 119435202 -33102057 - MIRb SINE MIR -72 196 48 8 1496 223 315 56 0 chr5 119436179 119436268 -33100991 + MER5A DNA MER1_type 61 154 -35 8 1496 252 184 0 0 chr5 119436496 119436545 -33100714 + CT-rich Low_complexity Low_complexity 1 49 0 8 1496 1448 22 0 17 chr5 119436603 119436784 -33100475 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 8 1496 261 222 0 0 chr5 119436786 119436849 -33100410 + CT-rich Low_complexity Low_complexity 2 64 0 8 1496 709 153 66 25 chr5 119436861 119436982 -33100277 - B1_Mur1 SINE Alu -14 135 10 8 1496 451 310 8 37 chr5 119437024 119437158 -33100101 - RSINE1 SINE B4 -33 132 3 8 1496 724 267 109 5 chr5 119437158 119437365 -33099894 - B4 SINE B4 -63 229 1 8 1496 318 148 0 0 chr5 119438122 119438176 -33099083 + (CAT)n Simple_repeat Simple_repeat 1 54 0 8 1496 684 151 0 27 chr5 119438433 119438659 -33098600 + (TG)n Simple_repeat Simple_repeat 1 219 0 8 1496 1425 94 5 0 chr5 119439531 119439723 -33097536 - B2_Mm1t SINE B2 0 193 1 8 1496 22 35 0 0 chr5 119440031 119440060 -33097199 + AT_rich Low_complexity Low_complexity 1 29 0 8 1496 263 287 88 7 chr5 119440180 119440319 -33096940 + ID_B1 SINE B4 6 202 -22 8 1496 274 289 20 82 chr5 119441356 119441454 -33095805 + B4 SINE B4 3 94 -198 8 1496 483 286 14 35 chr5 119441541 119441686 -33095573 - MLT1D LTR MaLR -39 466 325 8 1496 203 167 0 0 chr5 119442196 119442238 -33095021 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1496 566 171 0 11 chr5 119442238 119442415 -33094844 + (TCTCTG)n Simple_repeat Simple_repeat 4 178 0 8 1496 295 177 0 34 chr5 119442496 119442613 -33094646 + (TCTCTG)n Simple_repeat Simple_repeat 4 116 0 8 1496 205 141 0 111 chr5 119442615 119442687 -33094572 + (CTGGGG)n Simple_repeat Simple_repeat 1 64 0 8 1496 186 176 0 0 chr5 119442894 119442945 -33094314 + (CTGGGG)n Simple_repeat Simple_repeat 4 54 0 8 1496 264 152 0 0 chr5 119442941 119443007 -33094252 + (TCTCTG)n Simple_repeat Simple_repeat 5 70 0 8 1496 524 172 0 12 chr5 119443021 119443186 -33094073 + (TCTCTG)n Simple_repeat Simple_repeat 4 166 0 8 1496 215 211 42 0 chr5 119443189 119443284 -33093975 + (TG)n Simple_repeat Simple_repeat 1 99 0 8 1496 363 201 4 15 chr5 119443286 119443545 -33093714 + (TCTCTG)n Simple_repeat Simple_repeat 1 256 0 8 1496 231 164 0 0 chr5 119443561 119443622 -33093637 + (TCTCTG)n Simple_repeat Simple_repeat 4 64 0 8 1496 517 190 6 6 chr5 119443922 119444102 -33093157 + (CTGGGG)n Simple_repeat Simple_repeat 1 180 0 8 1496 635 188 6 0 chr5 119444125 119444301 -33092958 + (CTGGGG)n Simple_repeat Simple_repeat 3 179 0 8 1496 1270 301 88 37 chr5 119445184 119445698 -33091561 + MLT1F LTR MaLR 1 540 -8 8 1496 202 349 15 0 chr5 119445800 119445866 -33091393 + MIRb SINE MIR 182 248 -20 8 1496 225 306 16 0 chr5 119446703 119446765 -33090494 - L2b LINE L2 -49 3326 3264 8 1496 404 263 0 6 chr5 119447210 119447390 -33089869 + (TG)n Simple_repeat Simple_repeat 2 180 0 8 1496 327 217 0 0 chr5 119447421 119447527 -33089732 + (TG)n Simple_repeat Simple_repeat 2 107 0 8 1496 845 215 268 66 chr5 119448021 119448610 -33088649 + RMER1A Other Other 170 1066 0 8 1496 275 371 24 0 chr5 119448682 119448806 -33088453 - MER5A1 DNA MER1_type -36 130 4 8 1496 369 0 0 0 chr5 119448990 119449031 -33088228 + (TCTG)n Simple_repeat Simple_repeat 3 43 0 8 1496 587 258 56 61 chr5 119449972 119450170 -33087089 + B3A SINE B2 1 197 -1 8 1496 526 220 20 24 chr5 119450437 119450686 -33086573 + (TCCA)n Simple_repeat Simple_repeat 1 247 0 8 1496 381 43 0 0 chr5 119450812 119450859 -33086400 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 8 1496 215 122 20 0 chr5 119450914 119450963 -33086296 + (CATA)n Simple_repeat Simple_repeat 1 50 0 8 1496 248 188 14 0 chr5 119451019 119451088 -33086171 + (TCCA)n Simple_repeat Simple_repeat 4 73 0 8 1496 268 298 60 79 chr5 119451699 119451867 -33085392 - MIRm SINE MIR -16 252 54 8 1496 307 286 19 90 chr5 119452130 119452293 -33084966 + MIRc SINE MIR 5 158 -110 8 1496 297 254 0 0 chr5 119452348 119452462 -33084797 + (CAT)n Simple_repeat Simple_repeat 2 115 0 8 1496 200 302 45 23 chr5 119454358 119454446 -33082813 - MIR SINE MIR -71 191 102 8 1496 346 212 32 58 chr5 119454662 119454766 -33082493 + PB1D10 SINE Alu 2 101 -16 8 1496 433 264 0 0 chr5 119455453 119455544 -33081715 - ID_B1 SINE B4 0 224 134 8 1496 276 250 133 80 chr5 119455544 119455566 -33081693 - PB1D7 SINE Alu -1 119 1 8 1496 459 0 0 0 chr5 119456695 119456746 -33080513 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 1496 347 258 32 43 chr5 119456754 119456847 -33080412 - B3A SINE B2 -79 119 28 8 1496 337 246 118 39 chr5 119457109 119457236 -33080023 + MER58A DNA MER1_type 27 163 -61 8 1496 267 355 112 0 chr5 119458346 119458498 -33078761 + MIR SINE MIR 28 196 -66 8 1496 600 294 11 61 chr5 119458523 119458704 -33078555 + B3A SINE B2 1 172 -26 8 1496 603 67 0 0 chr5 119458706 119458795 -33078464 + (TG)n Simple_repeat Simple_repeat 2 90 0 8 1496 904 253 0 22 chr5 119458800 119458982 -33078277 - B3A SINE B2 -20 178 1 8 1496 493 283 136 94 chr5 119459124 119459455 -33077804 - LTR16B2 LTR ERVL -13 449 105 8 1496 259 143 20 39 chr5 119460468 119460519 -33076740 - MLT1H1 LTR MaLR -11 544 495 8 1496 411 255 56 2 chr5 119460499 119460618 -33076641 + B1_Mur1 SINE Alu 7 130 -19 9 1496 519 234 42 7 chr5 119460786 119460928 -33076331 - ORR1E LTR MaLR -212 147 1 9 1496 262 45 45 0 chr5 119461353 119461397 -33075862 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1496 345 260 59 10 chr5 119461531 119461632 -33075627 + PB1D7 SINE Alu 14 119 -1 9 1496 241 217 0 170 chr5 119462206 119462306 -33074953 - MLT1H1 LTR MaLR -357 270 188 8 1496 324 327 128 12 chr5 119462321 119462485 -33074774 - HAL1-3A_ME LINE L1 -406 2452 2270 9 1496 405 102 0 0 chr5 119463532 119463591 -33073668 + (CAT)n Simple_repeat Simple_repeat 2 60 0 9 1496 570 67 0 0 chr5 119463591 119463666 -33073593 + (CAG)n Simple_repeat Simple_repeat 1 75 0 9 1496 303 179 0 0 chr5 119463796 119463863 -33073396 + (TG)n Simple_repeat Simple_repeat 1 67 0 9 1496 307 136 0 0 chr5 119463863 119463907 -33073352 - HAL1-3A_ME LINE L1 -840 2018 1975 9 1496 845 168 6 0 chr5 119463929 119464108 -33073151 + (TG)n Simple_repeat Simple_repeat 1 180 0 9 1496 895 233 11 6 chr5 119464108 119464289 -33072970 - B3A SINE B2 -16 182 1 9 1496 353 321 0 28 chr5 119464444 119464608 -33072651 - L1MA5 LINE L1 -219 5937 5787 9 1496 382 280 17 0 chr5 119464610 119464728 -33072531 - L1M2 LINE L1 -476 5824 5705 9 1496 219 146 0 0 chr5 119465486 119465527 -33071732 + (GGGA)n Simple_repeat Simple_repeat 3 43 0 9 1496 450 0 0 0 chr5 119466169 119466219 -33071040 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 9 1496 405 0 0 0 chr5 119466382 119466427 -33070832 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1496 270 0 0 0 chr5 119466498 119466528 -33070731 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1496 306 0 0 0 chr5 119466692 119466726 -33070533 + (CAG)n Simple_repeat Simple_repeat 3 36 0 9 1496 902 242 18 35 chr5 119466866 119467093 -33070166 - ID_B1 SINE B4 0 224 2 9 1496 424 262 6 21 chr5 119467145 119467256 -33070003 - PB1D10 SINE Alu -5 115 3 9 1496 390 21 0 0 chr5 119467265 119467312 -33069947 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1496 339 130 0 0 chr5 119467331 119467385 -33069874 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 9 1496 528 16 0 0 chr5 119467385 119467446 -33069813 + (TC)n Simple_repeat Simple_repeat 2 62 0 9 1496 3820 80 7 31 chr5 119467695 119468238 -33069021 + L1_Mus2 LINE L1 6035 6564 -2 9 1496 436 271 187 8 chr5 119468307 119468441 -33068818 + RSINE1 SINE B4 3 160 -5 9 1496 459 0 0 0 chr5 119468441 119468492 -33068767 + (TAA)n Simple_repeat Simple_repeat 3 53 0 9 1496 267 31 0 0 chr5 119469596 119469628 -33067631 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 9 1496 518 279 86 21 chr5 119469734 119469921 -33067338 - B3 SINE B2 0 216 18 9 1496 392 291 76 28 chr5 119470118 119470153 -33067106 - B1F1 SINE Alu -2 146 8 9 1496 454 289 9 17 chr5 119470153 119470269 -33066990 - ID_B1 SINE B4 -21 203 89 9 1496 521 264 16 0 chr5 119470305 119470426 -33066833 - ID_B1 SINE B4 -15 209 87 9 1496 388 194 87 0 chr5 119470454 119470568 -33066691 - B3A SINE B2 0 216 93 9 1496 629 263 48 59 chr5 119470866 119471052 -33066207 + MTEa LTR MaLR 1 184 -195 9 1496 1130 85 0 6 chr5 119471054 119471219 -33066040 + (TCTCCC)n Simple_repeat Simple_repeat 1 164 0 9 1496 528 59 0 0 chr5 119471764 119471832 -33065427 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 9 1496 450 224 14 7 chr5 119471940 119472088 -33065171 + CT-rich Low_complexity Low_complexity 1 149 0 9 1496 304 309 63 28 chr5 119472092 119472235 -33065024 - HAL1-3A_ME LINE L1 -419 2439 2292 9 1496 513 288 71 14 chr5 119472291 119472432 -33064827 - RSINE1 SINE B4 -7 158 10 9 1496 716 220 106 7 chr5 119472456 119472671 -33064588 - MTEb LTR MaLR -29 350 115 9 1496 234 250 32 74 chr5 119472699 119472794 -33064465 + MIR SINE MIR 59 149 -113 9 1496 220 333 68 51 chr5 119472802 119472979 -33064280 + L4 LINE RTE 480 659 -1370 9 1496 338 204 0 11 chr5 119473442 119473531 -33063728 + (TTCA)n Simple_repeat Simple_repeat 1 88 0 9 1496 361 302 59 17 chr5 119473707 119473825 -33063434 - MIRb SINE MIR -59 209 87 9 1496 216 0 0 0 chr5 119474032 119474056 -33063203 + (TGGG)n Simple_repeat Simple_repeat 1 24 0 9 1496 260 294 121 121 chr5 119474453 119474817 -33062442 + MLT1M LTR MaLR 90 453 -219 9 1496 435 349 18 24 chr5 119475458 119475628 -33061631 - B4A SINE B4 -2 290 122 9 1496 469 373 30 56 chr5 119476324 119476662 -33060597 + MER2 DNA MER2_type 16 344 -1 9 1496 289 318 27 9 chr5 119476875 119476986 -33060273 - ORR1E LTR MaLR 0 359 247 9 1496 398 310 43 19 chr5 119477465 119477626 -33059633 - Tigger6a DNA MER2_type -594 489 325 9 1496 330 220 0 0 chr5 119477630 119477730 -33059529 + (TG)n Simple_repeat Simple_repeat 1 100 0 9 1496 457 308 115 52 chr5 119477732 119478020 -33059239 - Tigger6a DNA MER2_type -761 322 17 9 1496 199 404 26 9 chr5 119478064 119478179 -33059080 + L2c LINE L2 3271 3387 0 9 1496 450 252 3 0 chr5 119478483 119478791 -33058468 + (TG)n Simple_repeat Simple_repeat 1 309 0 9 1496 477 236 301 24 chr5 119478823 119479036 -33058223 - B4A SINE B4 -19 273 2 9 1496 242 325 133 37 chr5 119479741 119479763 -33057496 + B4 SINE B4 70 148 -144 9 1496 378 324 0 43 chr5 119479763 119479879 -33057380 + PB1D10 SINE Alu 1 111 -6 9 1496 242 325 133 37 chr5 119479879 119479903 -33057356 + B4 SINE B4 149 245 -47 9 1496 902 198 0 9 chr5 119479903 119480221 -33057038 + GA-rich Low_complexity Low_complexity 1 314 0 9 1496 240 246 0 16 chr5 119481063 119481125 -33056134 + ORR1E LTR MaLR 268 328 -31 9 1496 641 262 21 0 chr5 119482866 119483007 -33054252 + RSINE1 SINE B4 2 145 -20 9 1496 213 39 0 0 chr5 119483027 119483053 -33054206 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1496 1304 102 17 0 chr5 119483118 119483295 -33053964 - B2_Mm2 SINE B2 -14 181 2 9 1496 327 213 0 0 chr5 119483342 119483417 -33053842 + (TG)n Simple_repeat Simple_repeat 1 75 0 9 1496 779 228 0 72 chr5 119483417 119483611 -33053648 - B3A SINE B2 -16 182 3 9 1496 209 320 122 46 chr5 119483755 119483886 -33053373 + MIRb SINE MIR 96 236 -32 9 1496 2480 132 26 17 chr5 119484674 119485091 -33052168 - MTC LTR MaLR 0 421 1 9 1496 5336 174 96 69 chr5 119485091 119485330 -33051929 - MTC-int LTR MaLR 0 1258 1009 9 1496 1105 82 88 0 chr5 119485330 119485500 -33051759 + B2_Mm1a SINE B2 1 185 -8 9 1496 5336 174 96 69 chr5 119485500 119486484 -33050775 - MTC-int LTR MaLR -250 1008 2 9 1496 234 274 11 16 chr5 119486485 119486562 -33050697 - MTC LTR MaLR 0 421 344 9 1496 1093 266 65 16 chr5 119488186 119488568 -33048691 + Lx7 LINE L1 6914 7314 -382 9 1496 276 53 0 0 chr5 119488572 119488610 -33048649 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1496 25 31 0 0 chr5 119488802 119488834 -33048425 + AT_rich Low_complexity Low_complexity 1 32 0 9 1496 222 37 0 0 chr5 119488838 119488865 -33048394 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1496 248 235 132 0 chr5 119489398 119489466 -33047793 - B1_Mm SINE Alu -6 141 65 9 1496 717 253 14 122 chr5 119489441 119489662 -33047597 - ID_B1 SINE B4 -26 198 2 9 1496 198 0 0 0 chr5 119489734 119489756 -33047503 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 9 1496 298 342 57 98 chr5 119489833 119490079 -33047180 + MLT1L LTR MaLR 168 403 -207 9 1496 241 253 118 24 chr5 119491064 119491149 -33046110 - MIRb SINE MIR -124 144 52 9 1496 797 23 61 8 chr5 119491348 119491479 -33045780 + (CCCCCT)n Simple_repeat Simple_repeat 2 139 0 9 1496 385 281 36 22 chr5 119491999 119492137 -33045122 + B1F SINE Alu 2 141 -8 9 1496 565 265 46 33 chr5 119492158 119492310 -33044949 + RSINE1 SINE B4 12 165 0 9 1496 240 242 32 16 chr5 119492390 119492453 -33044806 + ID4_ SINE ID 2 65 -18 9 1496 966 177 68 0 chr5 119492529 119492721 -33044538 + B3 SINE B2 3 207 -9 9 1496 246 327 112 73 chr5 119492826 119493004 -33044255 - MER58B DNA MER1_type -90 251 67 9 1496 397 226 164 36 chr5 119493179 119493289 -33043970 + B3 SINE B2 91 214 -2 9 1496 1057 209 147 0 chr5 119493783 119494042 -33043217 + MTD LTR MaLR 27 323 -96 9 1496 469 205 0 93 chr5 119494097 119494194 -33043065 + B4 SINE B4 197 284 -8 9 1496 375 162 0 0 chr5 119494273 119494353 -33042906 + (CA)n Simple_repeat Simple_repeat 1 80 0 9 1496 680 91 9 0 chr5 119494374 119494484 -33042775 + (GA)n Simple_repeat Simple_repeat 1 111 0 9 1496 366 143 0 0 chr5 119494490 119494553 -33042706 + (CA)n Simple_repeat Simple_repeat 2 64 0 9 1496 414 139 0 0 chr5 119494554 119494626 -33042633 + (GA)n Simple_repeat Simple_repeat 1 72 0 9 1496 303 28 0 0 chr5 119494987 119495023 -33042236 + (TTA)n Simple_repeat Simple_repeat 3 38 0 9 1496 219 329 14 10 chr5 119495210 119495313 -33041946 - MIR SINE MIR -72 136 32 9 1496 385 178 78 24 chr5 119495504 119495671 -33041588 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 9 1496 771 114 22 28 chr5 119495686 119495822 -33041437 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 9 1496 2309 78 25 21 chr5 119495822 119496148 -33041111 + IAPLTR2b LTR ERVK 1 327 0 9 1496 771 114 22 28 chr5 119496148 119496192 -33041067 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 9 1496 193 75 50 0 chr5 119496204 119496244 -33041015 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 9 1496 225 0 0 0 chr5 119496290 119496315 -33040944 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1496 182 194 0 0 chr5 119496371 119496407 -33040852 + L2c LINE L2 3174 3209 -178 9 1496 540 184 29 0 chr5 119496558 119496661 -33040598 + RMER15 LTR ERVL 441 546 -29 9 1496 231 177 0 0 chr5 119496661 119496723 -33040536 + (TG)n Simple_repeat Simple_repeat 2 63 0 9 1496 414 88 21 42 chr5 119496744 119496839 -33040420 + (TCTCTG)n Simple_repeat Simple_repeat 2 94 0 9 1496 227 226 75 0 chr5 119496858 119496911 -33040348 + B4 SINE B4 27 83 -209 9 1496 378 0 0 0 chr5 119496911 119496953 -33040306 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1496 721 235 122 6 chr5 119496959 119497139 -33040120 + B3 SINE B2 16 216 0 9 1496 694 251 172 6 chr5 119497151 119497331 -33039928 + B4 SINE B4 83 292 0 9 1496 229 265 35 46 chr5 119498443 119498530 -33038729 + MLT2B2 LTR ERVL 22 107 -408 9 1496 1557 244 45 0 chr5 119498454 119498790 -33038469 + MTEb LTR MaLR 21 371 -8 1 1496 380 318 117 68 chr5 119499052 119499376 -33037883 - ORR1E LTR MaLR -19 340 1 1 1496 564 272 107 10 chr5 119499506 119499703 -33037556 - MIR SINE MIR -32 230 15 1 1496 188 86 29 0 chr5 119499760 119499795 -33037464 + (TATAG)n Simple_repeat Simple_repeat 1 36 0 1 1496 260 147 171 29 chr5 119500045 119500115 -33037144 - ORR1D1 LTR MaLR -13 361 282 1 1496 737 73 0 9 chr5 119500236 119500346 -33036913 + (GAAAA)n Simple_repeat Simple_repeat 1 109 0 2 1496 470 230 102 57 chr5 119501603 119501630 -33035629 + ID_B1 SINE B4 61 224 0 3 1496 610 205 39 23 chr5 119501630 119501760 -33035499 + B1F SINE Alu 18 149 0 4 1496 561 118 9 18 chr5 119501792 119501904 -33035355 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 1496 495 283 13 33 chr5 119504238 119504388 -33032871 - B1F SINE Alu -2 147 1 6 1496 198 0 0 0 chr5 119504931 119504953 -33032306 + (TCCCG)n Simple_repeat Simple_repeat 5 26 0 7 1496 315 161 0 0 chr5 119505947 119506003 -33031256 + (TAA)n Simple_repeat Simple_repeat 2 57 0 8 1496 222 125 62 0 chr5 119506117 119506163 -33031096 + T-rich Low_complexity Low_complexity 20 68 0 9 1496 1204 48 14 0 chr5 119506163 119506308 -33030951 - B1_Mus1 SINE Alu -1 147 1 1 1496 222 125 62 0 chr5 119506308 119506325 -33030934 + T-rich Low_complexity Low_complexity 2 19 0 1 1496 272 216 186 0 chr5 119506333 119506430 -33030829 + MIRm SINE MIR 53 167 -109 1 1496 432 37 0 0 chr5 119506717 119506771 -33030488 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1496 325 349 71 41 chr5 119507905 119508102 -33029157 - MIRb SINE MIR -39 229 27 1 1496 24 0 0 0 chr5 119508619 119508643 -33028616 + AT_rich Low_complexity Low_complexity 1 24 0 1 1496 429 278 22 74 chr5 119508977 119509171 -33028088 + MIRb SINE MIR 34 229 -39 1 1496 654 13 0 0 chr5 119509546 119509621 -33027638 + (CA)n Simple_repeat Simple_repeat 2 76 0 1 1496 232 224 67 33 chr5 119510561 119510621 -33026638 + L2b LINE L2 3297 3358 -17 1 1496 216 0 0 0 chr5 119510682 119510706 -33026553 + (CACAT)n Simple_repeat Simple_repeat 1 24 0 1 1496 297 317 0 0 chr5 119511540 119511622 -33025637 + (CA)n Simple_repeat Simple_repeat 2 83 0 2 1496 314 295 38 83 chr5 119513415 119513548 -33023711 + MIRm SINE MIR 11 137 -139 2 1496 377 253 23 12 chr5 119513947 119514119 -33023140 + (TATG)n Simple_repeat Simple_repeat 1 174 0 2 1496 317 234 6 45 chr5 119514157 119514336 -33022923 + (TATG)n Simple_repeat Simple_repeat 4 175 0 2 1496 520 213 11 17 chr5 119514341 119514522 -33022737 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1496 564 241 28 107 chr5 119514526 119514703 -33022556 - RSINE1 SINE B4 0 165 3 2 1496 253 322 98 33 chr5 119514926 119515048 -33022211 - B4A SINE B4 -17 275 146 2 1496 289 253 0 26 chr5 119515104 119515181 -33022078 + (TATG)n Simple_repeat Simple_repeat 4 78 0 2 1496 264 252 102 39 chr5 119515187 119515315 -33021944 + RLTR22_Mur LTR ERVK 1306 1441 -407 2 1496 410 174 35 20 chr5 119515432 119515632 -33021627 + (TCTA)n Simple_repeat Simple_repeat 1 203 0 2 1496 262 221 24 83 chr5 119515847 119515931 -33021328 - MIR SINE MIR -72 190 112 2 1496 359 20 60 0 chr5 119516071 119516121 -33021138 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 3 1496 951 152 0 0 chr5 119517263 119517441 -33019818 + (TTCA)n Simple_repeat Simple_repeat 2 179 0 3 1496 611 132 9 0 chr5 119517462 119517576 -33019683 + (TTCA)n Simple_repeat Simple_repeat 2 116 0 3 1496 21 36 0 0 chr5 119517827 119517855 -33019404 + AT_rich Low_complexity Low_complexity 1 28 0 3 1496 398 103 0 29 chr5 119517953 119518023 -33019236 + (TCCC)n Simple_repeat Simple_repeat 4 71 0 3 1496 343 250 217 0 chr5 119518050 119518142 -33019117 - PB1D10 SINE Alu -1 116 5 3 1496 665 259 93 24 chr5 119518219 119518448 -33018811 - B4 SINE B4 -33 259 7 3 1496 283 263 232 0 chr5 119518844 119518939 -33018320 + B1F1 SINE Alu 1 117 0 3 1496 661 326 69 4 chr5 119519158 119519389 -33017870 + B4A SINE B4 1 246 -46 3 1496 225 0 0 0 chr5 119519389 119519414 -33017845 + (GAA)n Simple_repeat Simple_repeat 3 27 0 3 1496 907 196 3 11 chr5 119519414 119519750 -33017509 + GA-rich Low_complexity Low_complexity 1 333 0 3 1496 555 56 0 0 chr5 119520549 119520620 -33016639 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 4 1496 252 0 0 0 chr5 119520620 119520647 -33016612 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 4 1496 369 0 0 0 chr5 119520677 119520718 -33016541 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1496 739 213 7 0 chr5 119520722 119520863 -33016396 - RSINE1 SINE B4 -21 144 3 4 1496 439 300 181 55 chr5 119521625 119521918 -33015341 - MLT1D LTR MaLR -173 332 3 4 1496 969 113 0 0 chr5 119523376 119523553 -33013706 + (TC)n Simple_repeat Simple_repeat 2 178 0 4 1496 240 35 0 0 chr5 119523553 119523581 -33013678 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1496 430 172 14 18 chr5 119523598 119523695 -33013564 - RSINE1 SINE B4 -197 95 1 4 1496 803 263 57 4 chr5 119523695 119523911 -33013348 - B4 SINE B4 -64 228 1 4 1496 218 309 0 0 chr5 119524145 119524213 -33013046 + (CACCAT)n Simple_repeat Simple_repeat 6 73 0 4 1496 287 275 66 0 chr5 119524740 119524831 -33012428 + MER81 DNA AcHobo 17 113 -1 5 1496 855 266 25 0 chr5 119525027 119525226 -33012033 - B3 SINE B2 -10 206 3 5 1496 3260 62 0 24 chr5 119525276 119525693 -33011566 - MTB_Mm LTR MaLR 0 407 1 5 1496 491 301 0 82 chr5 119526091 119526261 -33010998 + RSINE1 SINE B4 3 158 -7 5 1496 432 55 0 0 chr5 119526553 119526608 -33010651 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1496 307 292 41 28 chr5 119527271 119527450 -33009809 - MIR SINE MIR -65 197 15 5 1496 340 289 17 34 chr5 119527499 119527617 -33009642 + PB1D10 SINE Alu 2 117 0 5 1496 1238 61 0 0 chr5 119527674 119527822 -33009437 + B1_Mus1 SINE Alu 1 148 0 5 1496 267 133 0 0 chr5 119527822 119527867 -33009392 + (GAAAA)n Simple_repeat Simple_repeat 2 46 0 5 1496 538 279 62 24 chr5 119528037 119528246 -33009013 - ID_B1 SINE B4 -6 218 2 5 1496 685 180 141 39 chr5 119528655 119528835 -33008424 - B4 SINE B4 -20 272 86 6 1496 270 0 0 0 chr5 119528937 119528967 -33008292 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1496 1145 110 107 29 chr5 119528986 119529192 -33008067 - URR1A DNA MER1_type 0 226 5 6 1496 788 218 20 5 chr5 119529242 119529420 -33007839 - B3 SINE B2 -6 189 2 6 1496 1180 82 0 0 chr5 119529795 119529942 -33007317 + B1_Mus1 SINE Alu 2 148 0 6 1496 313 149 59 129 chr5 119530462 119530547 -33006712 - MTEa LTR MaLR -22 357 279 6 1496 246 160 0 0 chr5 119531143 119531193 -33006066 + (TTCA)n Simple_repeat Simple_repeat 4 53 0 6 1496 388 87 0 42 chr5 119531219 119531291 -33005968 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 6 1496 1102 71 0 28 chr5 119531296 119531441 -33005818 - B1_Mus1 SINE Alu -7 141 1 6 1496 476 215 0 40 chr5 119531650 119531774 -33005485 - B1_Mur4 SINE Alu -12 138 25 6 1496 317 261 10 102 chr5 119532456 119532554 -33004705 - PB1D10 SINE Alu 0 117 29 7 1496 222 292 31 0 chr5 119533064 119533129 -33004130 - MIR SINE MIR -110 152 86 7 1496 389 262 31 80 chr5 119533404 119533566 -33003693 + RSINE1 SINE B4 1 154 -11 7 1496 266 0 0 29 chr5 119533566 119533601 -33003658 + (TAAAA)n Simple_repeat Simple_repeat 5 38 0 7 1496 180 0 0 0 chr5 119533862 119533882 -33003377 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7 1496 416 283 6 0 chr5 119533970 119534143 -33003116 + (TA)n Simple_repeat Simple_repeat 1 174 0 7 1496 491 137 0 49 chr5 119534118 119534241 -33003018 + (TATG)n Simple_repeat Simple_repeat 2 118 0 7 1496 389 290 10 0 chr5 119534447 119534547 -33002712 + PB1D10 SINE Alu 15 115 -2 7 1496 533 281 37 67 chr5 119534705 119534720 -33002539 - RSINE1 SINE B4 -4 161 150 7 1496 801 82 0 0 chr5 119534720 119534830 -33002429 + (TG)n Simple_repeat Simple_repeat 1 110 0 7 1496 533 281 37 67 chr5 119534830 119534978 -33002281 - RSINE1 SINE B4 -16 149 3 7 1496 1029 113 0 0 chr5 119534984 119535143 -33002116 + (TTCC)n Simple_repeat Simple_repeat 3 161 0 8 1496 189 0 0 0 chr5 119536051 119536072 -33001187 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1496 261 0 0 0 chr5 119536072 119536101 -33001158 + (TGG)n Simple_repeat Simple_repeat 3 31 0 8 1496 296 133 17 0 chr5 119536416 119536476 -33000783 + (GGA)n Simple_repeat Simple_repeat 1 61 0 8 23 344 243 17 66 chr5 119537612 119537774 -32999485 - L2c LINE L2 -208 3167 3021 8 1497 600 101 0 0 chr5 119537868 119537957 -32999302 + (TG)n Simple_repeat Simple_repeat 1 89 0 8 1497 434 229 335 45 chr5 119538140 119538364 -32998895 + MTEb LTR MaLR 91 379 0 8 1497 257 68 0 22 chr5 119538457 119538502 -32998757 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 8 1497 1157 156 54 54 chr5 119539760 119539984 -32997275 - URR1B DNA MER1_type -1 224 1 8 1497 460 335 17 95 chr5 119540093 119540442 -32996817 - MLT1B LTR MaLR -17 373 52 8 1497 494 296 14 57 chr5 119540660 119540800 -32996459 + ID_B1 SINE B4 91 224 0 9 1497 452 263 28 35 chr5 119540858 119541000 -32996259 + HAL1-2a_MD LINE L1 2345 2485 -539 9 1497 989 233 48 122 chr5 119541479 119541871 -32995388 - MTE2a LTR MaLR -10 369 7 9 1497 420 247 34 0 chr5 119541877 119541966 -32995293 - PB1D10 SINE Alu -20 97 6 9 1497 467 251 151 45 chr5 119543205 119543384 -32993875 + ID_B1 SINE B4 4 201 -23 9 1497 321 26 0 0 chr5 119543419 119543457 -32993802 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 9 1497 334 140 42 31 chr5 119543499 119543595 -32993664 + C-rich Low_complexity Low_complexity 2 98 0 9 1497 229 345 0 11 chr5 119543595 119543683 -32993576 + CT-rich Low_complexity Low_complexity 2 88 0 9 1497 257 247 109 79 chr5 119543704 119543805 -32993454 - PB1D10 SINE Alu -13 104 1 9 1497 261 0 0 0 chr5 119543946 119543975 -32993284 + (TG)n Simple_repeat Simple_repeat 1 29 0 9 1497 227 327 0 0 chr5 119543984 119544036 -32993223 - RSINE1 SINE B4 -15 150 99 1 1497 623 260 89 42 chr5 119544540 119544753 -32992506 + ID_B1 SINE B4 2 224 0 1 1497 185 321 36 0 chr5 119544777 119544833 -32992426 - L2a LINE L2 -18 3408 3351 1 1497 298 355 35 21 chr5 119545086 119545230 -32992029 + MER58B DNA MER1_type 181 326 -15 1 1497 305 140 18 0 chr5 119545546 119545603 -32991656 + GA-rich Low_complexity Low_complexity 2 59 0 1 1497 418 274 55 48 chr5 119546367 119546594 -32990665 + B4 SINE B4 3 266 -26 1 1497 181 267 185 22 chr5 119546895 119546987 -32990272 + L2c LINE L2 3082 3188 -199 1 1497 261 57 0 0 chr5 119547488 119547523 -32989736 + (C)n Simple_repeat Simple_repeat 1 35 0 1 1497 2426 122 27 49 chr5 119547988 119548395 -32988864 + RMER10B LTR ERVL 1 398 0 1 1497 313 243 111 28 chr5 119548438 119548547 -32988712 - PB1D10 SINE Alu -3 124 10 1 1497 732 123 0 0 chr5 119548552 119548666 -32988593 + (TCTA)n Simple_repeat Simple_repeat 1 114 0 1 1497 973 125 20 14 chr5 119548666 119548812 -32988447 - B1_Mus1 SINE Alu -1 147 1 1 1497 210 150 0 0 chr5 119548995 119549035 -32988224 + (C)n Simple_repeat Simple_repeat 1 40 0 1 1497 285 304 0 0 chr5 119549499 119549667 -32987592 + (TG)n Simple_repeat Simple_repeat 1 168 0 1 1497 427 331 13 6 chr5 119549681 119549839 -32987420 + (TG)n Simple_repeat Simple_repeat 2 160 0 1 1497 522 282 0 0 chr5 119550442 119550552 -32986707 - PB1D9 SINE Alu -8 112 3 1 1497 395 293 79 48 chr5 119550554 119550719 -32986540 - MLT1D LTR MaLR -308 197 28 1 1497 225 211 0 0 chr5 119550936 119550988 -32986271 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1497 373 294 0 84 chr5 119551092 119551211 -32986048 - PB1D7 SINE Alu -2 118 10 1 1497 1960 252 12 0 chr5 119551476 119551876 -32985383 + MTD LTR MaLR 1 405 -14 1 1497 1216 62 7 0 chr5 119551908 119552054 -32985205 - B1_Mus1 SINE Alu -1 147 1 1 1497 268 272 10 42 chr5 119552144 119552240 -32985019 + C-rich Low_complexity Low_complexity 4 96 0 1 1497 1095 241 92 16 chr5 119552240 119552611 -32984648 - Lx8 LINE L1 -54 7419 7021 1 1497 204 341 24 12 chr5 119552962 119553045 -32984214 - MIR SINE MIR -84 124 41 1 1497 258 32 0 0 chr5 119553378 119553409 -32983850 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1497 214 156 0 62 chr5 119553546 119553594 -32983665 + C-rich Low_complexity Low_complexity 5 49 0 1 1497 471 212 7 13 chr5 119554448 119554601 -32982658 + (TCCA)n Simple_repeat Simple_repeat 4 155 0 1 1497 3324 127 26 15 chr5 119554646 119555175 -32982084 + RLTR31B_Mm LTR ERVK 1 535 -22 1 1497 838 149 5 14 chr5 119555175 119555398 -32981861 + (TCCA)n Simple_repeat Simple_repeat 1 220 0 1 1497 278 231 196 11 chr5 119555532 119555624 -32981635 - PB1D10 SINE Alu -1 116 8 1 1497 220 339 86 40 chr5 119558162 119558337 -32978922 + MIRc SINE MIR 20 202 -66 1 1497 192 288 42 70 chr5 119558972 119559043 -32978216 + MIRm SINE MIR 203 271 -5 1 1497 215 281 34 34 chr5 119559160 119559337 -32977922 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 1 1497 1077 90 17 0 chr5 119559390 119559567 -32977692 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1 1497 210 263 0 0 chr5 119559851 119559889 -32977370 - ID4_ SINE ID -11 72 35 1 1497 278 257 14 0 chr5 119559987 119560061 -32977198 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1497 206 258 67 15 chr5 119560790 119560924 -32976335 + (TATTG)n Simple_repeat Simple_repeat 3 143 0 1 1497 345 203 159 24 chr5 119560956 119561082 -32976177 - HAL1-3A_ME LINE L1 -750 2108 1966 1 1497 234 176 0 0 chr5 119561082 119561133 -32976126 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1497 333 250 61 111 chr5 119562161 119562260 -32974999 + AluF_3 SINE Alu 137 208 -103 1 1497 226 329 0 12 chr5 119562263 119562346 -32974913 + ID4_ SINE ID 2 83 0 1 1497 474 65 0 0 chr5 119562492 119562554 -32974705 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1497 345 47 0 0 chr5 119562623 119562666 -32974593 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1497 257 284 174 0 chr5 119562667 119562776 -32974483 - B4 SINE B4 -79 213 86 1 1497 913 147 11 11 chr5 119562786 119562965 -32974294 + CT-rich Low_complexity Low_complexity 1 179 0 1 1497 486 0 0 0 chr5 119563175 119563229 -32974030 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1497 318 288 0 0 chr5 119563486 119563552 -32973707 - ID_B1 SINE B4 -78 146 81 1 1497 352 194 0 27 chr5 119563557 119563631 -32973628 - ID4_ SINE ID -10 73 2 1 1497 26 30 0 0 chr5 119564109 119564142 -32973117 + GC_rich Low_complexity Low_complexity 1 33 0 1 1497 21 0 0 0 chr5 119564629 119564650 -32972609 + GC_rich Low_complexity Low_complexity 1 21 0 1 1497 380 272 103 8 chr5 119564723 119564849 -32972410 - RMER5 LTR ERV1 0 534 397 1 1497 833 252 12 41 chr5 119564830 119565074 -32972185 - RMER5 LTR ERV1 -265 269 33 1 1497 235 381 65 4 chr5 119565173 119565405 -32971854 - L1M5 LINE L1 -396 5844 5599 1 1497 1039 78 0 0 chr5 119565533 119565674 -32971585 - L1_Mus1 LINE L1 0 6567 6427 1 1497 252 0 0 0 chr5 119565756 119565784 -32971475 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1497 216 0 0 0 chr5 119565787 119565811 -32971448 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1497 769 158 110 0 chr5 119565836 119565963 -32971296 + B1_Mur4 SINE Alu 2 142 -8 1 1497 217 0 61 0 chr5 119565984 119566017 -32971242 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1 1497 466 189 130 19 chr5 119566098 119566206 -32971053 - ID_B1 SINE B4 -21 203 84 1 1497 524 274 81 20 chr5 119566418 119566698 -32970561 - MTE2b LTR MaLR -39 340 3 1 1497 480 306 86 19 chr5 119567435 119567692 -32969567 - B4A SINE B4 -18 274 1 1 1497 360 244 182 8 chr5 119568336 119568468 -32968791 - B4A SINE B4 -124 168 14 1 1497 372 77 0 0 chr5 119568622 119568674 -32968585 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 1 1497 369 220 59 20 chr5 119568695 119568797 -32968462 - PB1D10 SINE Alu -10 107 2 1 1497 269 317 85 85 chr5 119568852 119569028 -32968231 + B4 SINE B4 29 204 -88 1 1497 591 218 79 5 chr5 119568923 119569057 -32968202 + B1_Mur4 SINE Alu 5 145 -5 1 1497 330 382 0 29 chr5 119569117 119569222 -32968037 + B3A SINE B2 79 180 -18 1 1497 333 300 78 122 chr5 119569563 119569689 -32967570 + B4A SINE B4 78 206 -86 1 1497 836 182 0 0 chr5 119569689 119569826 -32967433 + B1_Mur2 SINE Alu 1 137 -12 1 1497 333 300 78 122 chr5 119569826 119569904 -32967355 + B4A SINE B4 207 273 -19 1 1497 225 0 0 0 chr5 119569912 119569937 -32967322 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1497 384 157 10 73 chr5 119569941 119570133 -32967126 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 1 1497 285 293 0 0 chr5 119570174 119570256 -32967003 - ID4 SINE ID 0 83 2 1 1497 982 212 118 70 chr5 119570585 119570915 -32966344 + MTE2a LTR MaLR 23 368 -11 1 1497 190 324 104 9 chr5 119571040 119571146 -32966113 + L2b LINE L2 3081 3196 -179 1 1497 452 334 37 107 chr5 119571808 119572123 -32965136 + MLT1E1 LTR MaLR 223 590 -64 1 1497 582 156 335 24 chr5 119572125 119572289 -32964970 - B3 SINE B2 0 216 2 1 1497 477 148 0 0 chr5 119572425 119572506 -32964753 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 1497 207 0 0 0 chr5 119572510 119572533 -32964726 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1497 1067 94 0 0 chr5 119572533 119572671 -32964588 - B1_Mus1 SINE Alu -10 138 1 1 1497 308 299 109 40 chr5 119572680 119572711 -32964548 - B2_Mm2 SINE B2 -9 186 1 1 1497 800 231 7 0 chr5 119572711 119572854 -32964405 - RSINE1 SINE B4 -20 145 2 1 1497 915 255 58 144 chr5 119573445 119573890 -32963369 - MTC LTR MaLR -14 407 1 1 1497 1820 282 91 82 chr5 119574270 119574690 -32962569 - L1M2 LINE L1 -2183 4665 4258 1 1497 610 188 17 0 chr5 119574690 119574807 -32962452 + PB1D9 SINE Alu 1 119 -1 1 1497 1820 295 93 72 chr5 119574807 119576264 -32960995 - L1M2 LINE L1 -2585 4257 2747 1 1497 525 314 47 32 chr5 119576685 119577060 -32960199 - L1M2 LINE L1 -4411 2438 1723 1 1497 611 264 55 45 chr5 119577153 119577355 -32959904 + B4 SINE B4 46 249 -43 1 1497 336 135 13 26 chr5 119577405 119577481 -32959778 + CT-rich Low_complexity Low_complexity 4 78 0 1 1497 288 0 0 0 chr5 119577481 119577513 -32959746 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1497 693 0 0 0 chr5 119577593 119577670 -32959589 + (TA)n Simple_repeat Simple_repeat 1 77 0 1 1497 405 196 367 18 chr5 119577712 119577821 -32959438 + B1_Mur2 SINE Alu 3 149 0 1 1497 288 231 112 25 chr5 119578050 119578130 -32959129 + ID_B1 SINE B4 112 198 -26 1 1497 942 144 0 0 chr5 119578154 119578376 -32958883 + (GGA)n Simple_repeat Simple_repeat 1 222 0 1 1497 330 26 0 0 chr5 119578812 119578851 -32958408 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1497 615 62 0 0 chr5 119578973 119579053 -32958206 + (GA)n Simple_repeat Simple_repeat 1 80 0 1 1497 360 0 0 0 chr5 119579646 119579686 -32957573 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1497 406 344 69 28 chr5 119579697 119579915 -32957344 - B4A SINE B4 -30 262 36 1 1497 1498 57 0 25 chr5 119579947 119580146 -32957113 - B2_Mm2 SINE B2 0 195 2 1 1497 382 330 68 12 chr5 119580889 119581085 -32956174 - MIR SINE MIR -26 242 39 1 1497 237 207 24 12 chr5 119581308 119581391 -32955868 + CT-rich Low_complexity Low_complexity 1 84 0 1 1497 191 164 36 0 chr5 119581993 119582048 -32955211 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 1 1497 198 71 0 0 chr5 119582057 119582085 -32955174 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1497 203 261 0 0 chr5 119582086 119582132 -32955127 + GA-rich Low_complexity Low_complexity 3 48 0 1 1497 279 239 110 27 chr5 119582154 119582227 -32955032 - B3 SINE B2 -137 79 1 1 1497 208 129 0 0 chr5 119582360 119582391 -32954868 - L2b LINE L2 -17 3358 3328 1 1497 525 269 35 7 chr5 119582760 119582902 -32954357 - RSINE1 SINE B4 -19 146 1 2 1497 456 256 120 0 chr5 119583159 119583276 -32953983 + ID_B1 SINE B4 11 141 -83 2 1497 246 321 204 8 chr5 119584061 119584076 -32953183 - B4A SINE B4 -46 246 165 2 1497 621 208 0 0 chr5 119584076 119584182 -32953077 - PB1D7 SINE Alu 0 120 15 2 1497 246 321 204 8 chr5 119584182 119584193 -32953066 - B4A SINE B4 -46 164 89 2 1497 204 298 110 46 chr5 119584328 119584437 -32952822 + MIRb SINE MIR 19 134 -134 2 1497 189 270 109 16 chr5 119584749 119584813 -32952446 + MIRm SINE MIR 91 160 -116 2 1497 410 301 58 54 chr5 119584906 119585094 -32952165 + B4 SINE B4 118 292 0 2 1497 343 281 2 24 chr5 119586027 119586469 -32950790 + (CATA)n Simple_repeat Simple_repeat 1 432 0 2 1497 402 173 0 0 chr5 119586534 119586609 -32950650 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1497 1028 211 14 14 chr5 119586613 119586824 -32950435 + ID_B1 SINE B4 5 215 -9 2 1497 482 304 61 17 chr5 119587012 119587243 -32950016 + L1ME3A LINE L1 5933 6173 0 2 1497 350 200 0 59 chr5 119587361 119587446 -32949813 + Charlie4z DNA MER1_type 88 167 0 2 1497 192 77 0 0 chr5 119588164 119588190 -32949069 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2 1497 448 258 152 19 chr5 119588238 119588396 -32948863 + MIRb SINE MIR 20 198 -70 2 1497 592 314 37 37 chr5 119588482 119588700 -32948559 + MER20 DNA MER1_type 2 219 0 2 1497 239 287 61 41 chr5 119588782 119588917 -32948342 + MIRc SINE MIR 3 133 -135 2 1497 815 224 62 14 chr5 119589667 119589875 -32947384 + ID_B1 SINE B4 1 218 -6 2 1497 438 103 0 0 chr5 119589892 119589970 -32947289 + (GAAA)n Simple_repeat Simple_repeat 4 81 0 2 1497 273 272 9 112 chr5 119590042 119590158 -32947101 - MIRc SINE MIR -76 192 88 2 1497 333 254 92 83 chr5 119590286 119590406 -32946853 + RSINE1 SINE B4 3 123 -42 2 1497 384 252 27 45 chr5 119590455 119590567 -32946692 + PB1D7 SINE Alu 11 120 0 2 1497 288 287 21 11 chr5 119590574 119590669 -32946590 + CT-rich Low_complexity Low_complexity 5 100 0 2 1497 369 294 71 73 chr5 119591149 119591400 -32945859 + RSINE1 SINE B4 56 291 -1 2 1497 318 337 123 10 chr5 119591409 119591604 -32945655 + MER2 DNA MER2_type 96 312 -33 2 1497 1242 90 0 0 chr5 119591909 119592087 -32945172 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2 1497 359 157 0 14 chr5 119592096 119592167 -32945092 + CT-rich Low_complexity Low_complexity 2 71 0 2 1497 1182 61 0 13 chr5 119592396 119592546 -32944713 - B1_Mus1 SINE Alu 0 148 1 2 1497 1090 133 105 29 chr5 119593074 119593283 -32943976 + URR1B DNA MER1_type 1 225 0 2 1497 788 100 0 8 chr5 119593323 119593444 -32943815 + (GGGAGA)n Simple_repeat Simple_repeat 2 121 0 2 1497 715 176 3 11 chr5 119593949 119594317 -32942942 + (CA)n Simple_repeat Simple_repeat 1 364 0 2 1497 314 388 8 0 chr5 119594371 119594500 -32942759 + (TATG)n Simple_repeat Simple_repeat 4 133 0 2 1497 647 225 130 74 chr5 119594504 119594720 -32942539 - B4A SINE B4 -11 281 54 2 1497 270 0 0 0 chr5 119594749 119594779 -32942480 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1497 306 0 0 0 chr5 119594779 119594812 -32942447 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1497 423 0 0 0 chr5 119594812 119594858 -32942401 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 1497 330 26 0 0 chr5 119595882 119595921 -32941338 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1497 682 264 25 0 chr5 119595923 119596082 -32941177 - B3A SINE B2 -34 164 2 2 1497 1002 113 0 0 chr5 119596093 119596244 -32941015 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 2 1497 926 74 0 0 chr5 119596302 119596424 -32940835 + B1_Mus1 SINE Alu 27 148 0 2 1497 292 38 0 71 chr5 119596429 119596485 -32940774 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 2 1497 762 240 0 25 chr5 119597164 119597322 -32939937 - RSINE1 SINE B4 -10 155 2 2 1497 876 196 0 0 chr5 119597450 119597629 -32939630 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1497 263 171 0 0 chr5 119597629 119597670 -32939589 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 2 1497 286 276 9 19 chr5 119597718 119597825 -32939434 + L1M3 LINE L1 5245 5350 -790 2 1497 229 273 91 0 chr5 119597952 119598029 -32939230 + L1M3 LINE L1 5562 5645 -544 2 1497 310 317 98 7 chr5 119598778 119598921 -32938338 - MIR SINE MIR -80 182 27 2 1497 774 105 0 0 chr5 119600368 119600482 -32936777 + (TTTC)n Simple_repeat Simple_repeat 2 115 0 2 1497 630 39 0 0 chr5 119601457 119601534 -32935725 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 2 1497 258 285 108 38 chr5 119602081 119602238 -32935021 - RLTR42-int LTR ERVK -4122 1400 1233 2 1497 468 0 0 0 chr5 119602566 119602618 -32934641 + (TC)n Simple_repeat Simple_repeat 2 53 0 2 1497 226 312 71 35 chr5 119602987 119603100 -32934159 - L2a LINE L2 -328 3098 2982 2 1497 196 327 38 67 chr5 119603315 119603420 -32933839 + MER5A DNA MER1_type 74 175 -14 2 1497 228 262 36 27 chr5 119603460 119603570 -32933689 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 2 1497 1717 162 81 42 chr5 119603612 119603972 -32933287 - ORR1D1 LTR MaLR 0 374 1 2 1497 299 361 83 0 chr5 119604327 119604460 -32932799 + ID_B1 SINE B4 81 224 0 2 1497 189 0 0 0 chr5 119604494 119604515 -32932744 + (CAT)n Simple_repeat Simple_repeat 3 23 0 2 1497 25 75 0 0 chr5 119604658 119604711 -32932548 + AT_rich Low_complexity Low_complexity 1 53 0 2 1497 796 274 29 25 chr5 119605086 119605400 -32931859 + L1MA8 LINE L1 5817 6131 -160 2 1497 230 303 91 0 chr5 119605468 119605534 -32931725 + MTE2b LTR MaLR 260 331 -48 2 1497 1335 300 155 52 chr5 119605561 119606269 -32930990 + MTE-int LTR MaLR 1 781 -799 2 1497 299 336 26 26 chr5 119606293 119606409 -32930850 + MTE-int LTR MaLR 1229 1344 -236 2 1497 417 86 0 0 chr5 119606409 119606467 -32930792 + (TAA)n Simple_repeat Simple_repeat 3 60 0 2 1497 259 345 50 16 chr5 119607007 119607128 -32930131 + MLT1I LTR MaLR 1 125 -286 2 1497 991 205 71 5 chr5 119607296 119607492 -32929767 + B3 SINE B2 8 216 0 2 1497 300 302 99 21 chr5 119607506 119607648 -32929611 - MER2 DNA MER2_type -80 265 113 2 1497 600 316 134 29 chr5 119607717 119607955 -32929304 - B4 SINE B4 -4 288 26 2 1497 636 59 0 0 chr5 119607997 119608082 -32929177 + (TG)n Simple_repeat Simple_repeat 2 86 0 2 1497 280 320 0 13 chr5 119608088 119608164 -32929095 - B3A SINE B2 -107 91 17 2 1497 721 327 43 95 chr5 119608922 119609344 -32927915 + MER44B DNA MER2_type 44 443 -107 2 1497 220 209 45 0 chr5 119609354 119609421 -32927838 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1497 291 310 0 11 chr5 119610852 119610940 -32926319 - RSINE1 SINE B4 -7 158 72 2 1497 540 295 6 51 chr5 119611057 119611214 -32926045 - RSINE1 SINE B4 -13 152 3 2 1497 360 247 53 11 chr5 119611404 119611498 -32925761 - MER81 DNA AcHobo 0 114 17 2 1497 606 305 25 42 chr5 119611739 119612023 -32925236 + B4A SINE B4 4 282 -10 2 1497 225 65 0 0 chr5 119612041 119612072 -32925187 + (CAA)n Simple_repeat Simple_repeat 3 33 0 2 1497 246 62 0 0 chr5 119612627 119612659 -32924600 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 1497 1251 135 354 8 chr5 119612669 119612923 -32924336 - ORR1A1 LTR MaLR 0 346 5 2 1497 1023 255 44 68 chr5 119613030 119613325 -32923934 + B4 SINE B4 1 288 -4 2 1497 288 0 0 0 chr5 119613375 119613407 -32923852 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1497 308 295 0 0 chr5 119613558 119613636 -32923623 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 2 1497 276 224 0 0 chr5 119613638 119613705 -32923554 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1497 1673 214 44 52 chr5 119613705 119614113 -32923146 + MTD LTR MaLR 1 405 -14 2 1497 698 308 98 28 chr5 119614876 119615130 -32922129 + B4A SINE B4 2 273 -19 2 1497 195 169 15 44 chr5 119616719 119616787 -32920472 + CT-rich Low_complexity Low_complexity 3 68 0 2 1497 431 299 136 56 chr5 119616821 119617034 -32920225 + MLT1F2 LTR MaLR 296 525 -35 2 1497 414 323 30 24 chr5 119617174 119617342 -32919917 + MIR SINE MIR 94 262 0 2 1497 583 291 172 24 chr5 119617380 119617676 -32919583 - ORR1E LTR MaLR -13 346 7 2 1497 223 281 40 40 chr5 119618361 119618461 -32918798 + BC1_Mm scRNA scRNA 3 102 -50 2 1497 789 217 0 60 chr5 119619026 119619175 -32918084 + RSINE1 SINE B4 3 143 -22 2 1497 405 0 0 0 chr5 119619175 119619220 -32918039 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1497 789 217 0 60 chr5 119619220 119619237 -32918022 + RSINE1 SINE B4 144 159 -6 2 1497 655 253 6 43 chr5 119619866 119620027 -32917232 + MER5A DNA MER1_type 28 182 -7 2 1497 991 276 73 26 chr5 119620523 119620795 -32916464 + B4A SINE B4 2 286 -6 2 1497 2480 129 102 0 chr5 119620815 119621196 -32916063 + MTC LTR MaLR 2 421 0 2 1497 400 360 6 11 chr5 119621218 119621398 -32915861 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 2 1497 320 267 29 38 chr5 119621797 119621902 -32915357 - MER5B DNA MER1_type -74 104 1 2 1497 357 221 40 40 chr5 119622160 119622259 -32915000 - Charlie26a DNA MER1_type -32 293 195 2 1497 346 148 0 0 chr5 119622473 119622527 -32914732 + HAL1-3A_ME LINE L1 1965 2018 -840 2 1497 425 169 38 34 chr5 119622530 119622793 -32914466 + (CA)n Simple_repeat Simple_repeat 1 263 0 2 1497 518 159 30 26 chr5 119622842 119623145 -32914114 + (CA)n Simple_repeat Simple_repeat 1 303 0 2 1497 2184 144 0 62 chr5 119624164 119624565 -32912694 - RLTR14 LTR ERV1 -4 378 3 2 1497 360 173 0 58 chr5 119624704 119624790 -32912469 - Lx8 LINE L1 -5 7468 7388 2 1497 206 116 0 23 chr5 119624906 119624950 -32912309 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2 1497 781 63 32 60 chr5 119625973 119626158 -32911101 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2 1497 888 93 45 17 chr5 119626184 119626585 -32910674 + (TCTA)n Simple_repeat Simple_repeat 1 411 0 2 1497 416 145 2 5 chr5 119626595 119626669 -32910590 - PB1D10 SINE Alu -40 108 36 3 1497 398 286 36 0 chr5 119626796 119626908 -32910351 + PB1D10 SINE Alu 1 116 -1 3 1497 257 265 0 0 chr5 119627420 119627489 -32909770 + polypyrimidine Low_complexity Low_complexity 1 69 0 3 1497 837 194 0 0 chr5 119627590 119627770 -32909489 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1497 543 161 30 8 chr5 119627764 119627895 -32909364 + (CATA)n Simple_repeat Simple_repeat 1 134 0 3 1497 507 184 60 20 chr5 119627905 119628005 -32909254 - B1_Mur1 SINE Alu -8 141 38 3 1497 236 301 70 35 chr5 119627930 119628016 -32909243 - MT2B LTR ERVL -333 268 180 3 1497 459 0 0 0 chr5 119629154 119629205 -32908054 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1497 188 416 0 50 chr5 119629379 119629498 -32907761 + MER5B DNA MER1_type 21 133 -45 3 1497 185 128 21 0 chr5 119629613 119629660 -32907599 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 3 1497 1079 51 66 0 chr5 119629660 119629797 -32907462 - B1_Mus1 SINE Alu 0 148 3 3 1497 280 296 0 0 chr5 119629952 119630023 -32907236 - MER5A DNA MER1_type -116 73 3 3 1497 510 253 131 34 chr5 119630458 119630634 -32906625 + B3 SINE B2 5 197 -19 3 1497 598 255 27 20 chr5 119630641 119630789 -32906470 + B1F SINE Alu 1 149 0 3 1497 447 314 29 0 chr5 119630789 119630926 -32906333 + B1F SINE Alu 1 141 -8 3 1497 629 80 44 0 chr5 119630930 119631043 -32906216 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 3 1497 206 156 22 0 chr5 119631092 119631137 -32906122 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 1497 642 73 27 0 chr5 119631194 119631304 -32905955 + (TAGA)n Simple_repeat Simple_repeat 4 116 0 3 1497 948 201 19 32 chr5 119631589 119631785 -32905474 + B3 SINE B2 2 198 -18 3 1497 423 0 0 0 chr5 119631785 119631832 -32905427 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1497 948 201 19 32 chr5 119631832 119631851 -32905408 + B3 SINE B2 199 213 -3 3 1497 398 330 109 25 chr5 119631912 119632195 -32905064 - L1MB1 LINE L1 -260 5929 5623 3 1497 336 270 60 25 chr5 119632222 119632431 -32904828 - L1MB1 LINE L1 -771 5541 5320 3 1497 653 126 9 0 chr5 119632432 119632543 -32904716 + (TCTA)n Simple_repeat Simple_repeat 1 112 0 3 1497 674 274 7 0 chr5 119632544 119632679 -32904580 - ID_B1 SINE B4 -8 216 81 3 1497 306 274 37 93 chr5 119632545 119632706 -32904553 + YREP_Mm Unknown Unknown 186 337 -1475 3 1497 247 290 43 70 chr5 119633260 119633375 -32903884 + LTR16B2 LTR ERVL 241 352 -110 3 1497 617 254 8 0 chr5 119635049 119635179 -32902080 - RSINE1 SINE B4 -32 133 3 3 1497 195 184 0 0 chr5 119635296 119635334 -32901925 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 3 1497 487 304 74 40 chr5 119635647 119635849 -32901410 + B4 SINE B4 80 288 -4 3 1497 980 234 55 5 chr5 119635997 119636216 -32901043 + B4A SINE B4 5 234 -58 3 1497 405 0 0 0 chr5 119636341 119636386 -32900873 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1497 462 101 0 0 chr5 119637068 119637137 -32900122 + (TG)n Simple_repeat Simple_repeat 1 69 0 3 1497 313 329 48 77 chr5 119637142 119637310 -32899949 - RSINE1 SINE B4 -1 164 2 3 1497 607 286 15 69 chr5 119637335 119637538 -32899721 - B3A SINE B2 -5 193 2 3 1497 435 297 0 0 chr5 119637783 119637958 -32899301 + (TG)n Simple_repeat Simple_repeat 2 176 0 3 1497 394 275 133 87 chr5 119638006 119638201 -32899058 - B4A SINE B4 -56 236 33 3 1497 185 355 63 35 chr5 119639052 119639195 -32898064 + MIR SINE MIR 1 147 -115 3 1497 365 287 93 18 chr5 119639861 119640034 -32897225 + MLT1J LTR MaLR 229 366 -146 3 1497 201 274 0 0 chr5 119640044 119640117 -32897142 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 1497 373 290 4 13 chr5 119640143 119640381 -32896878 + (TG)n Simple_repeat Simple_repeat 1 235 0 3 1497 396 289 8 34 chr5 119640678 119640796 -32896463 + MLT1J1 LTR MaLR 45 159 -285 3 1497 251 179 0 0 chr5 119640795 119640834 -32896425 + B4A SINE B4 239 277 -15 3 1497 1164 258 47 120 chr5 119641096 119641505 -32895754 - MTE2a LTR MaLR 0 379 1 3 1497 207 0 0 0 chr5 119641768 119641791 -32895468 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1497 424 240 100 38 chr5 119642735 119642895 -32894364 + ORR1E LTR MaLR 23 192 -167 3 1497 197 33 33 0 chr5 119643583 119643613 -32893646 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1497 279 337 98 36 chr5 119644347 119644385 -32892874 - MIR SINE MIR -40 222 187 3 1497 1151 275 88 17 chr5 119644385 119644737 -32892522 + MTEa LTR MaLR 3 379 0 3 1497 279 337 98 36 chr5 119644737 119644892 -32892367 - MIR SINE MIR -76 186 18 3 1497 333 338 64 96 chr5 119644926 119644971 -32892288 - MLT1D LTR MaLR -12 493 458 3 1497 1263 147 4 47 chr5 119644971 119645207 -32892052 + URR1A DNA MER1_type 1 226 0 3 1497 333 338 64 96 chr5 119645207 119645495 -32891764 - MLT1D LTR MaLR -48 457 167 3 1497 606 296 47 18 chr5 119645495 119645774 -32891485 + B4 SINE B4 2 288 -4 3 1497 333 338 64 96 chr5 119645774 119645858 -32891401 - MLT1D LTR MaLR -339 166 88 3 1497 3024 257 100 25 chr5 119647041 119647947 -32889312 + RCHARR1 DNA MER1_type 1 974 0 3 1497 341 276 102 8 chr5 119648032 119648160 -32889099 + MER5A1 DNA MER1_type 25 164 -2 3 1497 233 267 0 0 chr5 119648176 119648236 -32889023 - MER117 DNA MER1_type -29 168 109 3 1497 459 0 0 0 chr5 119648248 119648299 -32888960 + (TCC)n Simple_repeat Simple_repeat 2 52 0 3 1497 639 48 0 0 chr5 119649174 119649257 -32888002 + (TG)n Simple_repeat Simple_repeat 1 83 0 3 1497 185 333 78 0 chr5 119649705 119649795 -32887464 - MIR SINE MIR -85 177 81 3 1497 218 215 81 60 chr5 119650822 119650908 -32886351 - L2b LINE L2 0 3387 3303 3 1497 546 209 8 34 chr5 119650916 119651035 -32886224 + PB1D10 SINE Alu 1 116 -1 3 1497 216 158 0 0 chr5 119651047 119651085 -32886174 + GA-rich Low_complexity Low_complexity 2 39 0 3 1497 281 292 161 43 chr5 119651455 119651616 -32885643 - MIRc SINE MIR -1 267 88 3 1497 583 223 0 28 chr5 119651692 119652123 -32885136 + (TG)n Simple_repeat Simple_repeat 1 418 0 3 1497 207 358 0 0 chr5 119652166 119652247 -32885012 + CT-rich Low_complexity Low_complexity 2 82 0 3 1497 545 258 0 4 chr5 119652710 119652941 -32884318 + (TG)n Simple_repeat Simple_repeat 1 229 0 3 1497 631 292 103 27 chr5 119652970 119653339 -32883920 - L1MA4 LINE L1 -409 5891 5495 3 1497 500 232 101 0 chr5 119653401 119653500 -32883759 + B1_Mur1 SINE Alu 18 126 -23 3 1497 810 31 0 0 chr5 119653500 119653597 -32883662 + (TG)n Simple_repeat Simple_repeat 1 97 0 3 1497 208 279 185 41 chr5 119654281 119654427 -32882832 - MIRb SINE MIR -39 229 63 3 1497 303 303 0 73 chr5 119654429 119654447 -32882812 - PB1D10 SINE Alu 0 117 105 3 1497 339 25 0 0 chr5 119654447 119654487 -32882772 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1497 303 303 0 73 chr5 119654487 119654564 -32882695 - PB1D10 SINE Alu -13 104 29 3 1497 477 0 0 0 chr5 119655266 119655319 -32881940 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1497 345 266 9 44 chr5 119656311 119656425 -32880834 - RMER30 DNA MER1_type -1 201 92 3 1497 273 125 0 0 chr5 119656517 119656573 -32880686 + (ATG)n Simple_repeat Simple_repeat 3 58 0 3 1497 588 240 30 15 chr5 119656686 119656817 -32880442 + ID_B1 SINE B4 89 221 -3 3 1497 285 349 46 26 chr5 119656817 119656837 -32880422 - YREP_Mm Unknown Unknown -1502 308 155 3 1497 555 249 127 38 chr5 119657153 119657366 -32879893 - Tigger7 DNA MER2_type -1 2490 2259 3 1497 347 0 23 0 chr5 119657386 119657429 -32879830 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 1497 423 0 0 0 chr5 119657429 119657475 -32879784 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1497 291 245 50 20 chr5 119657496 119657596 -32879663 - B4A SINE B4 -4 288 186 3 1497 324 98 0 89 chr5 119657691 119657747 -32879512 + HAL1-3A_ME LINE L1 1976 2026 -832 3 1497 261 135 0 0 chr5 119657938 119657990 -32879269 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 1497 240 312 21 11 chr5 119658290 119658384 -32878875 - MIRm SINE MIR -115 161 67 3 1497 432 0 0 0 chr5 119658547 119658595 -32878664 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1497 261 163 0 58 chr5 119659247 119659299 -32877960 - ID_B1 SINE B4 0 224 176 3 1497 334 213 39 26 chr5 119659255 119659332 -32877927 - PB1D7 SINE Alu -8 112 35 3 1497 320 320 63 32 chr5 119659718 119659844 -32877415 + MIR SINE MIR 95 231 -37 3 1497 252 259 37 12 chr5 119659958 119660038 -32877221 - MTEa LTR MaLR -37 342 266 3 1497 1728 211 83 11 chr5 119660049 119660422 -32876837 - MTD LTR MaLR -14 405 6 3 1497 904 288 87 0 chr5 119660398 119660662 -32876597 - MTEa LTR MaLR -80 299 13 3 1497 187 356 11 0 chr5 119660879 119660966 -32876293 - MIR SINE MIR -130 132 45 3 1497 188 246 92 62 chr5 119661851 119661916 -32875343 - MIR SINE MIR -177 85 19 3 1497 560 309 36 16 chr5 119662142 119662336 -32874923 + ID_B1 SINE B4 1 198 -26 3 1497 945 169 7 0 chr5 119662696 119662998 -32874261 + (TCCA)n Simple_repeat Simple_repeat 1 304 0 3 1497 396 246 0 0 chr5 119663012 119663150 -32874109 + (TCCA)n Simple_repeat Simple_repeat 1 138 0 3 1497 323 316 74 37 chr5 119663153 119663396 -32873863 - MLT2D LTR ERVL -56 358 107 3 1497 180 0 0 0 chr5 119663610 119663630 -32873629 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 1497 315 375 38 43 chr5 119664049 119664258 -32873001 + MLT1L LTR MaLR 40 247 -363 3 1497 440 241 25 17 chr5 119664623 119664741 -32872518 - MTEa LTR MaLR 0 379 261 3 1497 231 385 40 32 chr5 119664878 119665004 -32872255 - MIRb SINE MIR -84 184 58 3 1497 649 293 40 0 chr5 119665009 119665183 -32872076 + B3A SINE B2 1 181 -17 3 1497 203 328 0 0 chr5 119665200 119665264 -32871995 + (CACG)n Simple_repeat Simple_repeat 3 66 0 3 1497 21 57 0 0 chr5 119665264 119665299 -32871960 + AT_rich Low_complexity Low_complexity 1 35 0 3 1497 196 294 26 97 chr5 119665300 119665413 -32871846 + MIRb SINE MIR 83 187 -81 3 1497 180 0 0 0 chr5 119666076 119666096 -32871163 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 3 1497 457 312 142 38 chr5 119666099 119666339 -32870920 - LTR33A LTR ERVL -252 268 4 4 1497 914 221 44 5 chr5 119668348 119668553 -32868706 + ID_B1 SINE B4 3 215 -9 4 1498 206 298 179 19 chr5 119669000 119669106 -32868153 + MIRc SINE MIR 73 195 -73 4 1498 194 270 60 60 chr5 119669072 119669139 -32868120 - L2 LINE L2 -3216 203 137 4 1498 186 189 0 0 chr5 119669146 119669183 -32868076 + (TTG)n Simple_repeat Simple_repeat 1 37 0 4 1498 633 288 117 5 chr5 119669207 119669420 -32867839 - B4A SINE B4 -2 290 54 4 1498 291 280 89 10 chr5 119669736 119669837 -32867422 - L1MA4A LINE L1 -368 5935 5827 4 1498 809 232 41 10 chr5 119669853 119670049 -32867210 - MLT1B LTR MaLR -166 224 23 4 1498 738 259 37 28 chr5 119670508 119670726 -32866533 - ID_B1 SINE B4 -2 222 3 4 1498 251 372 0 0 chr5 119671784 119671878 -32865381 + CT-rich Low_complexity Low_complexity 3 96 0 4 1498 1224 101 0 0 chr5 119671906 119672084 -32865175 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 4 1498 481 170 29 15 chr5 119672084 119672221 -32865038 + CT-rich Low_complexity Low_complexity 4 142 0 4 1498 608 191 38 15 chr5 119673715 119673848 -32863411 + RLTR11A LTR ERVK 1 136 -392 4 1498 1238 165 61 30 chr5 119673805 119674052 -32863207 - RLTR11A LTR ERVK -252 276 3 4 1498 180 111 0 0 chr5 119674062 119674089 -32863170 + (TTCCC)n Simple_repeat Simple_repeat 1 27 0 4 1498 204 67 0 0 chr5 119675290 119675320 -32861939 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1498 180 0 0 0 chr5 119675485 119675505 -32861754 + (CA)n Simple_repeat Simple_repeat 1 20 0 4 1498 1323 240 101 9 chr5 119675670 119676006 -32861253 - MTEa LTR MaLR 0 379 13 4 1498 321 326 54 7 chr5 119676187 119676335 -32860924 + B4A SINE B4 15 169 -123 4 1498 647 221 0 8 chr5 119676386 119676640 -32860619 + (CA)n Simple_repeat Simple_repeat 1 251 0 4 1498 183 343 15 15 chr5 119677701 119677769 -32859490 + MIRc SINE MIR 93 160 -108 4 1498 446 339 71 94 chr5 119678917 119679269 -32857990 + ORR1E LTR MaLR 6 349 -10 4 1498 491 246 38 23 chr5 119679583 119679612 -32857647 + MTD LTR MaLR 1 27 -392 4 1498 2655 43 6 36 chr5 119679612 119679949 -32857310 - IAPLTR2b LTR ERVK 0 327 1 4 1498 916 204 109 15 chr5 119679949 119680249 -32857010 + MTD LTR MaLR 28 419 0 4 1498 224 122 24 0 chr5 119680270 119680311 -32856948 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 4 1498 279 0 0 0 chr5 119680335 119680366 -32856893 + (CA)n Simple_repeat Simple_repeat 1 31 0 4 1498 783 266 75 75 chr5 119680371 119680623 -32856636 - B4 SINE B4 -39 253 2 4 1498 216 0 0 0 chr5 119680666 119680690 -32856569 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4 1498 22 35 0 0 chr5 119680790 119680819 -32856440 + AT_rich Low_complexity Low_complexity 1 29 0 4 1498 649 144 395 25 chr5 119680846 119681003 -32856256 + B3 SINE B2 2 216 0 4 1498 803 151 229 28 chr5 119681851 119682123 -32855136 - ORR1C1 LTR MaLR 0 327 1 4 1498 396 0 0 0 chr5 119682146 119682190 -32855069 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1498 432 0 0 0 chr5 119682190 119682237 -32855022 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1498 397 91 44 22 chr5 119682453 119682543 -32854716 + CT-rich Low_complexity Low_complexity 3 94 0 4 1498 340 304 23 0 chr5 119682645 119682748 -32854511 - PB1D7 SINE Alu -4 123 11 4 1498 273 379 40 20 chr5 119683967 119684115 -32853144 - MLT1H1 LTR MaLR -360 195 45 4 1498 255 297 0 0 chr5 119684207 119684271 -32852988 + MIRb SINE MIR 159 222 -46 4 1498 338 308 18 4 chr5 119684308 119684418 -32852841 - MER91A DNA Tip100 -84 112 2 4 1498 206 315 31 42 chr5 119684564 119684660 -32852599 - L2b LINE L2 -66 3309 3215 4 1498 854 229 98 10 chr5 119684660 119684863 -32852396 + ID_B1 SINE B4 2 222 -2 4 1498 474 236 0 0 chr5 119685107 119685230 -32852029 + A-rich Low_complexity Low_complexity 2 124 0 4 1498 264 256 145 12 chr5 119686227 119686310 -32850949 - ID_B1 SINE B4 -130 94 1 4 1498 335 280 28 65 chr5 119686310 119686415 -32850844 - ID_B1 SINE B4 -33 191 91 4 1498 396 218 33 44 chr5 119686328 119686419 -32850840 - B1F1 SINE Alu -51 98 9 4 1498 393 385 22 72 chr5 119687004 119687323 -32849936 - MT2A LTR ERVL -138 395 93 4 1498 254 151 148 19 chr5 119687465 119687519 -32849740 - MTE2b LTR MaLR 0 379 319 4 1498 351 321 55 9 chr5 119687529 119687639 -32849620 + MIRc SINE MIR 35 153 -115 4 1498 503 301 82 10 chr5 119687807 119688002 -32849257 - RMER15 LTR ERVL 0 575 367 4 1498 533 166 48 24 chr5 119688053 119688220 -32849039 + CT-rich Low_complexity Low_complexity 3 173 0 4 1498 354 196 128 21 chr5 119688724 119688860 -32848399 + MIRb SINE MIR 44 201 -7 4 1498 851 276 16 0 chr5 119689567 119689759 -32847500 + ID_B1 SINE B4 9 203 -21 4 1498 231 36 0 0 chr5 119689763 119689791 -32847468 + (TAAAA)n Simple_repeat Simple_repeat 5 32 0 4 1498 1446 146 123 6 chr5 119689961 119690235 -32847024 + ORR1C2 LTR MaLR 1 280 -104 4 1498 239 289 35 96 chr5 119690902 119691017 -32846242 + L2b LINE L2 3268 3375 0 4 1498 295 250 0 0 chr5 119691231 119691295 -32845964 + B4A SINE B4 5 68 -224 4 1498 264 366 25 25 chr5 119691244 119691401 -32845858 + Kanga1a DNA Tc2 203 359 -395 4 1498 368 294 49 32 chr5 119691527 119691650 -32845609 - B4A SINE B4 -44 248 124 4 1498 393 206 14 34 chr5 119691653 119691799 -32845460 + C-rich Low_complexity Low_complexity 3 145 0 4 1498 26 50 0 0 chr5 119691856 119691896 -32845363 + AT_rich Low_complexity Low_complexity 1 40 0 4 1498 403 274 121 58 chr5 119691913 119692153 -32845106 - Lx8 LINE L1 -28 7445 7191 4 1498 410 218 134 24 chr5 119692154 119692281 -32844978 - B1F SINE Alu -8 141 1 4 1498 227 314 22 55 chr5 119692281 119692371 -32844888 + Kanga1a DNA Tc2 537 623 -131 4 1498 459 0 0 0 chr5 119693130 119693181 -32844078 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1498 516 286 92 12 chr5 119693297 119693479 -32843780 - B4A SINE B4 -2 290 94 4 1498 420 314 152 56 chr5 119694310 119694580 -32842679 + ORR1E LTR MaLR 56 351 -8 4 1498 864 144 0 46 chr5 119694997 119695150 -32842109 - B1_Mur3 SINE Alu -1 148 3 4 1498 350 125 0 15 chr5 119695469 119695488 -32841771 + (TA)n Simple_repeat Simple_repeat 2 20 0 4 1498 1389 64 0 0 chr5 119695488 119695851 -32841408 + (CATA)n Simple_repeat Simple_repeat 1 363 0 4 1498 1158 122 0 1 chr5 119695851 119696255 -32841004 + (TA)n Simple_repeat Simple_repeat 1 403 0 4 1498 462 291 0 9 chr5 119696281 119696392 -32840867 - PB1D10 SINE Alu -7 110 1 4 1498 229 319 14 0 chr5 119696331 119696403 -32840856 - B4A SINE B4 -146 146 74 4 1498 542 294 0 63 chr5 119697720 119697894 -32839365 + RSINE1 SINE B4 3 165 0 4 1498 292 138 31 0 chr5 119697903 119697968 -32839291 + (CA)n Simple_repeat Simple_repeat 1 67 0 4 1498 589 144 12 36 chr5 119697986 119698152 -32839107 + (CATA)n Simple_repeat Simple_repeat 1 162 0 4 1498 1026 269 52 60 chr5 119698286 119698555 -32838704 + B4 SINE B4 8 274 -18 4 1498 225 0 0 0 chr5 119698580 119698605 -32838654 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1498 224 59 0 29 chr5 119698679 119698714 -32838545 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1498 190 203 92 15 chr5 119699038 119699103 -32838156 + MIR SINE MIR 79 148 -114 4 1498 184 298 0 41 chr5 119699707 119699756 -32837503 - L2 LINE L2 -3309 110 64 4 1498 213 323 0 0 chr5 119699725 119699787 -32837472 - MIRc SINE MIR -124 144 83 4 1498 806 152 5 33 chr5 119700454 119700638 -32836621 + GA-rich Low_complexity Low_complexity 2 180 0 4 1498 787 167 13 40 chr5 119700724 119700874 -32836385 - URR1A DNA MER1_type -1 225 80 4 1498 335 253 70 99 chr5 119700874 119700891 -32836368 + CYRA11_Mm Unknown Y-chromosome 171 332 -285 4 1498 313 215 91 61 chr5 119701110 119701209 -32836050 - RSINE1 SINE B4 -7 158 57 4 1498 697 94 51 18 chr5 119702048 119702384 -32834875 + (TG)n Simple_repeat Simple_repeat 1 346 0 4 1498 196 145 41 49 chr5 119702417 119702540 -32834719 + (TG)n Simple_repeat Simple_repeat 1 122 0 4 1498 1048 279 24 31 chr5 119702593 119702882 -32834377 - B4A SINE B4 -2 290 4 4 1498 931 328 119 13 chr5 119703039 119703502 -32833757 - MLT1H LTR MaLR 0 549 38 4 1498 1025 174 304 14 chr5 119703569 119703695 -32833564 - ORR1D1 LTR MaLR 0 374 224 4 1498 684 0 0 0 chr5 119703695 119703771 -32833488 + (GA)n Simple_repeat Simple_repeat 2 77 0 4 1498 1025 174 304 14 chr5 119703771 119703930 -32833329 - ORR1D1 LTR MaLR -151 223 7 4 1498 383 313 90 0 chr5 119704055 119704069 -32833190 - B1F SINE Alu -3 146 1 4 1498 525 283 42 0 chr5 119704069 119704189 -32833070 - ID_B1 SINE B4 -18 206 82 4 1498 590 244 122 22 chr5 119704225 119704405 -32832854 - B3A SINE B2 0 198 1 4 1498 378 0 0 0 chr5 119704565 119704607 -32832652 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 1498 1448 70 16 0 chr5 119704637 119704823 -32832436 - B2_Mm2 SINE B2 -6 189 1 4 1498 242 213 0 0 chr5 119705625 119705672 -32831587 + MIR SINE MIR 104 150 -58 4 1498 224 353 63 19 chr5 119705855 119706014 -32831245 + L2b LINE L2 3203 3368 -7 4 1498 411 73 0 0 chr5 119706018 119706073 -32831186 + (TGAA)n Simple_repeat Simple_repeat 3 57 0 4 1498 595 82 36 0 chr5 119706307 119706417 -32830842 + (CAGAGA)n Simple_repeat Simple_repeat 1 114 0 4 1498 350 279 180 0 chr5 119706815 119706874 -32830385 + ID SINE ID 9 74 -150 4 1498 531 69 0 0 chr5 119706874 119706946 -32830313 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1498 350 279 180 0 chr5 119706946 119707008 -32830251 + ID_B1 SINE B4 75 151 -73 4 1498 214 271 0 0 chr5 119707086 119707134 -32830125 + PB1 SINE Alu 75 122 -5 4 1498 189 0 0 0 chr5 119707355 119707376 -32829883 + (CACAG)n Simple_repeat Simple_repeat 4 24 0 4 1498 609 280 11 6 chr5 119707432 119707608 -32829651 - B3A SINE B2 -18 180 4 5 1498 206 279 101 130 chr5 119708879 119709048 -32828211 + L2a LINE L2 3007 3170 -256 5 1498 398 344 66 45 chr5 119709053 119709251 -32828008 - B4A SINE B4 -90 202 1 5 1498 587 287 7 0 chr5 119709275 119709411 -32827848 - B1_Mur1 SINE Alu -8 141 5 5 1498 234 233 0 0 chr5 119709540 119709583 -32827676 + (TGGG)n Simple_repeat Simple_repeat 1 43 0 5 1498 962 180 6 0 chr5 119709585 119710078 -32827181 + (TGGA)n Simple_repeat Simple_repeat 1 496 0 5 1498 393 330 28 28 chr5 119710373 119710551 -32826708 + MER96B DNA hAT 1 178 -239 5 1498 291 369 0 47 chr5 119710613 119710645 -32826614 + ID_B1 SINE B4 78 218 -6 5 1498 485 302 0 0 chr5 119710645 119710761 -32826498 + B1F SINE Alu 28 143 -6 5 1498 750 286 0 6 chr5 119710780 119710945 -32826314 + RSINE1 SINE B4 2 165 0 5 1498 23 0 0 0 chr5 119712061 119712084 -32825175 + AT_rich Low_complexity Low_complexity 1 23 0 5 1498 477 0 0 0 chr5 119712228 119712281 -32824978 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1498 547 245 126 65 chr5 119712281 119712512 -32824747 - B4A SINE B4 -47 245 1 5 1498 797 193 6 88 chr5 119712762 119712921 -32824338 + RSINE1 SINE B4 3 148 -17 5 1498 806 250 32 61 chr5 119712995 119713272 -32823987 + B4A SINE B4 2 270 -22 5 1498 180 0 0 0 chr5 119713683 119713703 -32823556 + (A)n Simple_repeat Simple_repeat 1 20 0 5 1498 961 157 198 0 chr5 119713887 119714059 -32823200 + B3 SINE B2 1 206 -10 5 1498 21 57 0 0 chr5 119714068 119714103 -32823156 + AT_rich Low_complexity Low_complexity 1 35 0 5 1498 533 190 32 78 chr5 119714323 119714477 -32822782 + B1F2 SINE Alu 3 149 0 5 1498 471 181 27 0 chr5 119714606 119714703 -32822556 - PB1D9 SINE Alu -11 109 1 5 1498 28 29 0 0 chr5 119714811 119714846 -32822413 + AT_rich Low_complexity Low_complexity 1 35 0 5 1498 424 254 115 31 chr5 119714948 119715078 -32822181 - B1F1 SINE Alu -6 143 3 5 1498 529 269 96 7 chr5 119715078 119715127 -32822132 - ID_B1 SINE B4 -134 90 29 5 1498 252 59 0 0 chr5 119715127 119715161 -32822098 + (CCAA)n Simple_repeat Simple_repeat 1 34 0 5 1498 766 216 60 75 chr5 119716640 119716840 -32820419 + B3A SINE B2 1 197 -1 5 1498 1592 228 94 25 chr5 119717199 119717591 -32819668 - MTD LTR MaLR 0 419 1 5 1498 327 380 68 64 chr5 119717591 119717899 -32819360 + MLT1I LTR MaLR 103 411 0 5 1498 339 321 18 9 chr5 119718335 119718445 -32818814 + CT-rich Low_complexity Low_complexity 2 112 0 5 1498 188 111 0 0 chr5 119718812 119718839 -32818420 - MIRc SINE MIR -124 144 118 5 1498 189 212 0 0 chr5 119719243 119719276 -32817983 + MIRm SINE MIR 121 153 -123 5 1498 310 311 129 0 chr5 119719815 119719947 -32817312 - B1F1 SINE Alu 0 149 1 5 1498 234 0 0 0 chr5 119719953 119719979 -32817280 + (TG)n Simple_repeat Simple_repeat 2 27 0 5 1498 744 310 116 0 chr5 119719984 119720242 -32817017 - B4 SINE B4 -4 288 1 5 1498 432 0 0 0 chr5 119720386 119720434 -32816825 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1498 395 0 0 163 chr5 119720444 119720659 -32816600 + (CAGAG)n Simple_repeat Simple_repeat 1 180 0 5 1498 374 157 12 35 chr5 119720674 119720760 -32816499 + B1_Mus2 SINE Alu 42 125 -22 5 1498 669 110 0 0 chr5 119720760 119720860 -32816399 + (AGGGGG)n Simple_repeat Simple_repeat 2 101 0 5 1498 531 313 13 39 chr5 119720898 119721051 -32816208 + RSINE1 SINE B4 6 154 -11 5 1498 214 337 53 48 chr5 119721074 119721251 -32816008 + MIR3 SINE MIR 44 224 -38 5 1498 594 175 6 28 chr5 119722522 119722704 -32814555 + CT-rich Low_complexity Low_complexity 3 180 0 5 1498 426 198 120 40 chr5 119722738 119722838 -32814421 - B4A SINE B4 -38 254 147 5 1498 402 333 41 24 chr5 119723368 119723537 -32813722 - MER117 DNA MER1_type -6 191 20 5 1498 490 330 28 9 chr5 119723759 119723976 -32813283 + Lx8 LINE L1 7020 7240 -233 5 1498 344 191 0 16 chr5 119724002 119724066 -32813193 + RMER15 LTR ERVL 403 465 -110 5 1498 267 122 0 0 chr5 119724141 119724190 -32813069 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1498 194 267 12 12 chr5 119724397 119724560 -32812699 + (CA)n Simple_repeat Simple_repeat 2 164 0 5 1498 368 227 11 50 chr5 119724620 119724801 -32812458 + (CATATA)n Simple_repeat Simple_repeat 6 179 0 5 1498 410 357 16 78 chr5 119726827 119727070 -32810189 + ORR1E LTR MaLR 5 232 -138 5 1498 187 229 191 67 chr5 119727177 119727266 -32809993 - L2b LINE L2 -20 3355 3256 5 1498 182 175 48 48 chr5 119727384 119727426 -32809833 + L4 LINE RTE 539 580 -1449 5 1498 322 358 18 29 chr5 119727560 119727730 -32809529 + MIR SINE MIR 82 249 -13 5 1498 197 59 37 56 chr5 119727760 119727814 -32809445 + T-rich Low_complexity Low_complexity 1 53 0 5 1498 1254 47 0 7 chr5 119727814 119727963 -32809296 - B1_Mus1 SINE Alu 0 148 1 5 1498 281 255 186 0 chr5 119728083 119728185 -32809074 - L2b LINE L2 0 3375 3255 5 1498 500 349 29 17 chr5 119728237 119728412 -32808847 - B3A SINE B2 -21 177 1 5 1498 1235 202 177 18 chr5 119728541 119728837 -32808422 + RMER15 LTR ERVL 196 543 -32 5 1498 270 0 0 0 chr5 119728837 119728867 -32808392 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1498 1235 202 177 18 chr5 119728867 119728898 -32808361 + RMER15 LTR ERVL 544 575 0 5 1498 447 19 0 0 chr5 119729040 119729092 -32808167 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1498 635 291 123 27 chr5 119729238 119729605 -32807654 - Lx8 LINE L1 -73 7400 6999 5 1498 1285 194 117 60 chr5 119729612 119729963 -32807296 - ORR1D1 LTR MaLR -3 371 1 5 1498 1974 161 25 56 chr5 119729963 119730151 -32807108 - ORR1D1-int LTR MaLR 0 1370 1181 5 1498 324 0 0 0 chr5 119730151 119730187 -32807072 + (TATAA)n Simple_repeat Simple_repeat 4 39 0 5 1498 1974 161 25 56 chr5 119730187 119730393 -32806866 - ORR1D1-int LTR MaLR -190 1180 988 5 1498 232 303 0 43 chr5 119730868 119730937 -32806322 - MIR SINE MIR 0 262 197 5 1498 776 221 0 42 chr5 119730952 119731117 -32806142 + RSINE1 SINE B4 2 159 -6 5 1498 495 0 0 0 chr5 119731121 119731176 -32806083 + (GA)n Simple_repeat Simple_repeat 2 56 0 5 1498 515 206 0 6 chr5 119731191 119731367 -32805892 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 5 1498 204 40 0 0 chr5 119731367 119731392 -32805867 + (CATA)n Simple_repeat Simple_repeat 1 25 0 5 1498 293 295 90 55 chr5 119731529 119731679 -32805580 + MIRb SINE MIR 19 174 -94 5 1498 1004 272 88 44 chr5 119731724 119732020 -32805239 + ORR1D2 LTR MaLR 45 353 -17 5 1498 228 35 0 0 chr5 119732381 119732410 -32804849 + (CAA)n Simple_repeat Simple_repeat 3 31 0 5 1498 299 345 138 52 chr5 119732664 119732954 -32804305 - L2a LINE L2 -3 3423 3109 5 1498 264 344 52 22 chr5 119733477 119733611 -32803648 + MER119 DNA MER1_type 47 184 -399 5 1498 491 268 28 48 chr5 119733707 119733958 -32803301 - L1MDa LINE L1 -4055 2585 2340 5 1498 342 335 81 77 chr5 119733962 119734234 -32803025 - L1MDa LINE L1 -4733 1907 1635 5 1498 364 292 37 30 chr5 119734284 119734418 -32802841 - RMER15 LTR ERVL -87 488 354 5 1498 306 0 0 0 chr5 119734854 119734888 -32802371 + (TTG)n Simple_repeat Simple_repeat 2 35 0 5 1498 323 312 88 48 chr5 119735104 119735353 -32801906 - L1MDa LINE L1 -5351 1196 938 5 1498 225 333 0 0 chr5 119735371 119735437 -32801822 - L1MDa LINE L1 -5662 885 820 5 1498 891 78 0 0 chr5 119735895 119736024 -32801235 + (TTTCC)n Simple_repeat Simple_repeat 4 132 0 5 1498 183 205 0 0 chr5 119736043 119736082 -32801177 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1498 414 284 0 0 chr5 119736124 119736300 -32800959 + (TG)n Simple_repeat Simple_repeat 2 177 0 5 1498 461 318 95 77 chr5 119736537 119736874 -32800385 + MER119 DNA MER1_type 233 575 -8 5 1498 708 156 6 18 chr5 119737461 119737624 -32799635 + GA-rich Low_complexity Low_complexity 3 163 0 5 1498 378 0 0 0 chr5 119738584 119738626 -32798633 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1498 1001 151 32 6 chr5 119738960 119739308 -32797951 + (TAGA)n Simple_repeat Simple_repeat 1 357 0 5 1498 1702 178 57 25 chr5 119739315 119739632 -32797627 + MTC LTR MaLR 81 407 -14 5 1498 288 170 0 0 chr5 119739686 119739739 -32797520 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1498 251 250 0 15 chr5 119739904 119739969 -32797290 + C-rich Low_complexity Low_complexity 5 68 0 5 1498 219 167 0 0 chr5 119740369 119740405 -32796854 + (TCTCTG)n Simple_repeat Simple_repeat 5 40 0 5 1498 309 139 0 0 chr5 119740990 119741033 -32796226 + B4 SINE B4 2 44 -248 5 1498 181 143 0 0 chr5 119741043 119741071 -32796188 - MIRc SINE MIR -120 148 121 5 1498 218 333 113 32 chr5 119741147 119741333 -32795926 - MIRc SINE MIR -43 225 25 5 1498 433 294 16 164 chr5 119741473 119741656 -32795603 - B3A SINE B2 -4 191 36 5 1498 193 241 103 0 chr5 119742437 119742495 -32794764 + MIRc SINE MIR 69 132 -136 5 1498 493 195 90 79 chr5 119743015 119743204 -32794055 - B2_Mm2 SINE B2 -4 191 1 5 1498 732 255 89 16 chr5 119744069 119744146 -32793113 + ID_B1 SINE B4 6 96 -128 5 1498 460 257 0 134 chr5 119744146 119744291 -32792968 + B1F1 SINE Alu 1 126 -23 5 1498 3080 111 0 33 chr5 119744291 119744740 -32792519 + RLTR10C LTR ERVK 1 434 -2 5 1498 460 257 0 134 chr5 119744740 119744765 -32792494 + B1F1 SINE Alu 127 148 -1 5 1498 370 351 33 26 chr5 119745383 119745535 -32791724 - LTR33 LTR ERVL -326 189 37 5 1498 326 246 221 0 chr5 119746513 119746635 -32790624 - MER115 DNA Tip100 -28 665 517 5 1498 256 365 112 42 chr5 119746744 119746984 -32790275 - MER115 DNA Tip100 -375 318 62 5 1498 403 102 51 0 chr5 119747253 119747312 -32789947 + 5S rRNA rRNA 1 62 -59 5 1498 391 257 69 0 chr5 119747312 119747413 -32789846 + PB1D10 SINE Alu 2 109 -8 5 1498 255 23 22 43 chr5 119747435 119747481 -32789778 + (TAA)n Simple_repeat Simple_repeat 1 45 0 5 1498 222 312 96 116 chr5 119747568 119747622 -32789637 - B3 SINE B2 -15 201 7 5 1498 633 262 0 28 chr5 119747622 119747767 -32789492 - RSINE1 SINE B4 -17 148 8 5 1498 1020 136 0 0 chr5 119748372 119748548 -32788711 + (TG)n Simple_repeat Simple_repeat 2 177 0 5 1498 1266 34 7 0 chr5 119748664 119748810 -32788449 + B1_Mm SINE Alu 1 147 0 6 1498 216 0 0 0 chr5 119748815 119748839 -32788420 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1498 213 305 24 0 chr5 119749250 119749332 -32787927 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 6 1498 328 299 0 18 chr5 119749528 119749637 -32787622 + L1MEa LINE L1 344 450 -5620 6 1498 753 99 0 0 chr5 119749734 119749855 -32787404 + (TC)n Simple_repeat Simple_repeat 2 122 0 6 1498 224 250 0 0 chr5 119749859 119749886 -32787373 + polypyrimidine Low_complexity Low_complexity 28 54 0 6 1498 240 35 0 0 chr5 119749886 119749915 -32787344 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 6 1498 224 250 0 0 chr5 119749915 119749939 -32787320 + polypyrimidine Low_complexity Low_complexity 4 27 0 6 1498 342 0 0 0 chr5 119750523 119750561 -32786698 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1498 405 0 0 0 chr5 119750561 119750605 -32786654 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1498 672 283 128 68 chr5 119751218 119751483 -32785776 + B4A SINE B4 1 281 -11 6 1498 405 0 0 0 chr5 119751489 119751534 -32785725 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1498 267 299 0 25 chr5 119752209 119752288 -32784971 + B1F1 SINE Alu 70 146 -3 6 1498 210 71 0 0 chr5 119752295 119752323 -32784936 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 6 1498 264 222 0 0 chr5 119752393 119752438 -32784821 + ID4_ SINE ID 35 79 -4 6 1498 273 343 59 10 chr5 119752789 119752992 -32784267 - L1MA8 LINE L1 -269 6022 5810 6 1498 292 315 80 18 chr5 119753093 119753206 -32784053 + RSINE1 SINE B4 6 125 -40 6 1498 279 0 0 0 chr5 119753280 119753311 -32783948 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1498 507 278 0 87 chr5 119753731 119753869 -32783390 + RSINE1 SINE B4 4 129 -36 6 1498 319 227 61 0 chr5 119754023 119754089 -32783170 + B4 SINE B4 220 289 -3 6 1498 216 273 0 0 chr5 119754405 119754482 -32782777 + (CATA)n Simple_repeat Simple_repeat 3 79 0 6 1498 623 240 112 27 chr5 119754497 119754685 -32782574 - MER121 Unknown Unknown -167 245 42 6 1498 474 18 0 0 chr5 119755418 119755473 -32781786 + (CTA)n Simple_repeat Simple_repeat 1 55 0 6 1498 440 239 0 33 chr5 119755783 119755965 -32781294 + (TATG)n Simple_repeat Simple_repeat 4 179 0 6 1498 309 269 74 25 chr5 119756092 119756214 -32781045 + MIRc SINE MIR 11 138 -130 6 1498 456 270 40 0 chr5 119756322 119756448 -32780811 - B1F2 SINE Alu -17 132 2 6 1498 468 0 0 0 chr5 119756484 119756536 -32780723 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1498 357 340 9 27 chr5 119756541 119756653 -32780606 - ID_B1 SINE B4 -107 117 8 6 1498 240 310 162 31 chr5 119757120 119757222 -32780037 - MER58A DNA MER1_type 0 224 102 6 1498 264 91 0 0 chr5 119757222 119757266 -32779993 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1498 240 310 162 31 chr5 119757266 119757323 -32779936 - MER58A DNA MER1_type -123 101 44 6 1498 991 250 70 46 chr5 119757404 119757621 -32779638 + B4 SINE B4 1 234 -58 6 1498 393 22 0 0 chr5 119757621 119757667 -32779592 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1498 991 250 70 46 chr5 119757667 119757734 -32779525 + B4 SINE B4 235 291 -1 6 1498 717 227 89 31 chr5 119758366 119758557 -32778702 - B3 SINE B2 0 216 15 6 1498 231 61 0 0 chr5 119758604 119758637 -32778622 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1498 210 281 31 0 chr5 119759091 119759155 -32778104 + CT-rich Low_complexity Low_complexity 4 69 0 6 1498 2052 174 117 8 chr5 119759494 119759870 -32777389 - MTC LTR MaLR 0 421 5 6 1498 379 262 0 0 chr5 119760829 119760909 -32776350 + ID4_ SINE ID 1 80 -3 6 1498 394 241 6 33 chr5 119760920 119761100 -32776159 + GA-rich Low_complexity Low_complexity 1 175 0 6 1498 333 0 0 0 chr5 119761261 119761298 -32775961 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1498 696 83 0 0 chr5 119761504 119761613 -32775646 + (TG)n Simple_repeat Simple_repeat 2 110 0 6 1498 251 180 0 0 chr5 119761642 119761692 -32775567 - L1M5 LINE L1 -398 5842 5793 6 1498 414 253 10 21 chr5 119762597 119762694 -32774565 + B4 SINE B4 114 209 -83 6 1498 252 0 0 0 chr5 119762787 119762815 -32774444 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1498 405 0 0 0 chr5 119764003 119764048 -32773211 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1498 580 264 158 28 chr5 119764048 119764301 -32772958 - B4A SINE B4 -4 288 3 6 1498 28 0 0 0 chr5 119764952 119764980 -32772279 + AT_rich Low_complexity Low_complexity 1 28 0 6 1498 531 0 0 0 chr5 119765827 119765886 -32771373 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 6 1498 1111 68 24 30 chr5 119765886 119766053 -32771206 - B2_Mm2 SINE B2 -29 166 1 6 1498 406 272 99 12 chr5 119766082 119766253 -32771006 + L1M4 LINE L1 5067 5252 -894 6 1498 549 333 63 67 chr5 119766303 119766534 -32770725 - MTE2a LTR MaLR -39 340 111 6 1498 1234 225 153 0 chr5 119766534 119766854 -32770405 + ORR1D1 LTR MaLR 1 369 -5 6 1498 554 284 63 29 chr5 119766799 119766973 -32770286 - MTE2a LTR MaLR -199 180 1 6 1498 376 300 94 99 chr5 119767145 119767378 -32769881 - RMER15 LTR ERVL -7 568 337 6 1498 396 0 0 0 chr5 119767484 119767528 -32769731 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1498 327 280 107 106 chr5 119768105 119768447 -32768812 + MLT1C LTR MaLR 23 385 -5 6 1498 297 0 0 0 chr5 119768607 119768640 -32768619 + (GGGAGA)n Simple_repeat Simple_repeat 1 33 0 6 1498 622 169 11 17 chr5 119768640 119768789 -32768470 + GA-rich Low_complexity Low_complexity 1 148 0 6 1498 252 0 0 0 chr5 119768789 119768817 -32768442 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1498 622 169 11 17 chr5 119768817 119768848 -32768411 + polypurine Low_complexity Low_complexity 149 179 0 6 1498 186 317 52 82 chr5 119769285 119769419 -32767840 + L2c LINE L2 3034 3163 -224 6 1498 435 339 123 54 chr5 119770014 119770217 -32767042 + B4A SINE B4 1 217 -75 6 1498 637 239 34 21 chr5 119770225 119770379 -32766880 + B3A SINE B2 1 159 -36 6 1498 315 0 0 0 chr5 119770379 119770414 -32766845 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1498 367 268 74 58 chr5 119770414 119770449 -32766810 + B2_Mm2 SINE B2 160 193 -2 6 1498 311 237 13 38 chr5 119770456 119770535 -32766724 + B4A SINE B4 216 292 0 6 1498 465 275 0 0 chr5 119770583 119770761 -32766498 + (CA)n Simple_repeat Simple_repeat 1 178 0 6 1498 470 278 3 0 chr5 119770790 119771105 -32766154 + (CA)n Simple_repeat Simple_repeat 1 316 0 6 1498 256 264 0 0 chr5 119771105 119771158 -32766101 + MLT1C LTR MaLR 359 411 0 6 1498 228 190 0 23 chr5 119771411 119771454 -32765805 - L2a LINE L2 -9 3417 3376 6 1498 552 299 54 127 chr5 119771815 119772202 -32765057 + ORR1E LTR MaLR 1 359 0 6 1498 654 202 6 11 chr5 119773070 119773245 -32764014 + (CA)n Simple_repeat Simple_repeat 1 174 0 6 1498 427 245 3 14 chr5 119773261 119773557 -32763702 + (CA)n Simple_repeat Simple_repeat 1 292 0 6 1498 1061 268 4 33 chr5 119773719 119773993 -32763266 + B4A SINE B4 13 278 -14 6 1498 217 293 17 0 chr5 119774009 119774067 -32763192 + (CA)n Simple_repeat Simple_repeat 1 59 0 6 1498 372 102 0 0 chr5 119774067 119774116 -32763143 + HAL1-3A_ME LINE L1 1976 2024 -834 6 1498 341 308 42 25 chr5 119774573 119774693 -32762566 + B1F SINE Alu 28 149 0 6 1498 207 69 0 0 chr5 119775669 119775698 -32761561 + (TGG)n Simple_repeat Simple_repeat 1 29 0 6 1498 254 164 18 0 chr5 119776639 119776694 -32760565 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 6 1498 300 27 0 0 chr5 119776817 119776854 -32760405 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1498 193 329 89 0 chr5 119776915 119776994 -32760265 + MIRc SINE MIR 41 126 -142 6 1498 216 231 32 21 chr5 119777486 119777579 -32759680 + CT-rich Low_complexity Low_complexity 1 94 0 6 1498 310 250 12 48 chr5 119777582 119777666 -32759593 - ID4 SINE ID -1 82 2 6 1498 273 373 67 24 chr5 119777700 119777865 -32759394 - MIR SINE MIR -62 200 29 6 1498 456 104 0 0 chr5 119778081 119778148 -32759111 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1498 537 16 0 0 chr5 119778148 119778209 -32759050 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1498 671 293 102 19 chr5 119778324 119778588 -32758671 - B4A SINE B4 -6 286 1 6 1498 405 287 36 7 chr5 119778610 119778747 -32758512 - B1F SINE Alu -8 141 1 6 1498 204 111 0 0 chr5 119779450 119779486 -32757773 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1498 288 294 206 78 chr5 119780443 119780544 -32756715 + B4 SINE B4 8 105 -187 6 1498 243 0 0 0 chr5 119780544 119780571 -32756688 + (CAG)n Simple_repeat Simple_repeat 1 27 0 6 1498 288 294 206 78 chr5 119780571 119780687 -32756572 + B4 SINE B4 106 253 -39 6 1498 477 50 0 0 chr5 119780700 119780760 -32756499 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1498 338 209 19 14 chr5 119781250 119781464 -32755795 + GA-rich Low_complexity Low_complexity 1 214 0 6 1498 281 330 87 10 chr5 119782147 119782251 -32755008 + PB1 SINE Alu 14 125 -2 6 1498 211 189 0 0 chr5 119782263 119782300 -32754959 + ID4 SINE ID 4 40 -43 6 1498 378 129 0 0 chr5 119782312 119782374 -32754885 + (GGA)n Simple_repeat Simple_repeat 3 64 0 6 1498 192 40 0 0 chr5 119782672 119782697 -32754562 + (CA)n Simple_repeat Simple_repeat 1 25 0 6 1498 264 174 0 0 chr5 119783145 119783191 -32754068 - ID_B1 SINE B4 -47 177 132 6 1498 241 247 192 0 chr5 119783191 119783215 -32754044 - B1F1 SINE Alu -47 99 16 6 1498 641 269 147 17 chr5 119783246 119783484 -32753775 + B4A SINE B4 2 270 -22 6 1498 378 42 0 0 chr5 119783484 119783532 -32753727 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1498 473 216 0 36 chr5 119783595 119783763 -32753496 + (TATG)n Simple_repeat Simple_repeat 4 165 0 6 1498 417 238 19 0 chr5 119784153 119784258 -32753001 + HAL1-2a_MD LINE L1 2340 2446 -578 6 1498 674 240 10 14 chr5 119784260 119784663 -32752596 + HAL1-2a_MD LINE L1 2345 2516 -508 6 1498 674 244 0 12 chr5 119784671 119784953 -32752306 + HAL1-2a_MD LINE L1 2345 2507 -517 6 1498 186 171 0 0 chr5 119784955 119784996 -32752263 + (CAT)n Simple_repeat Simple_repeat 1 41 0 6 1498 650 246 5 25 chr5 119784998 119785194 -32752065 + HAL1-2a_MD LINE L1 2345 2519 -505 7 1498 182 171 24 0 chr5 119785913 119785954 -32751305 + G-rich Low_complexity Low_complexity 4 45 0 7 1498 240 185 0 0 chr5 119786369 119786423 -32750836 + CT-rich Low_complexity Low_complexity 2 55 0 7 1498 197 111 0 43 chr5 119786505 119786552 -32750707 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 7 1498 237 185 0 0 chr5 119786612 119786677 -32750582 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 7 1498 301 168 36 21 chr5 119786726 119786866 -32750393 + (TCTCTG)n Simple_repeat Simple_repeat 3 144 0 7 1498 703 260 171 12 chr5 119786980 119787225 -32750034 + B4A SINE B4 1 284 -8 7 1498 276 299 0 0 chr5 119787253 119787390 -32749869 + (CA)n Simple_repeat Simple_repeat 2 138 0 7 1498 617 289 82 11 chr5 119788465 119788647 -32748612 - ID_B1 SINE B4 -28 196 2 7 1498 493 287 19 26 chr5 119788819 119788973 -32748286 + MIRb SINE MIR 18 170 -98 7 1498 1011 301 3 21 chr5 119789650 119789938 -32747321 + B4 SINE B4 3 285 -7 7 1498 314 352 15 30 chr5 119790722 119790854 -32746405 - B1_Mur1 SINE Alu -1 148 19 7 1498 303 142 0 116 chr5 119791039 119791112 -32746147 - B1F SINE Alu -57 92 29 7 1498 426 20 0 0 chr5 119791303 119791354 -32745905 + (TC)n Simple_repeat Simple_repeat 1 51 0 7 1498 285 271 146 61 chr5 119791432 119791644 -32745615 - Lx7 LINE L1 -333 7363 7134 7 1498 414 100 0 0 chr5 119791779 119791839 -32745420 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1498 561 192 13 26 chr5 119793308 119793463 -32743796 + (TATG)n Simple_repeat Simple_repeat 2 154 0 7 1498 636 236 0 0 chr5 119793430 119793608 -32743651 + (TG)n Simple_repeat Simple_repeat 1 178 0 7 1498 816 215 3 0 chr5 119793622 119793917 -32743342 + (TG)n Simple_repeat Simple_repeat 1 296 0 7 1498 301 149 0 0 chr5 119793917 119793964 -32743295 - HAL1-3A_ME LINE L1 -840 2018 1972 7 1498 271 229 115 0 chr5 119794136 119794197 -32743062 + B3A SINE B2 1 68 -130 7 1498 2654 103 57 3 chr5 119794201 119794590 -32742669 - MTC LTR MaLR -8 413 4 7 1498 357 263 9 112 chr5 119794613 119794720 -32742539 + B3A SINE B2 100 195 -3 7 1498 482 139 34 25 chr5 119795952 119796070 -32741189 + CT-rich Low_complexity Low_complexity 2 120 0 7 1498 3434 175 128 85 chr5 119796392 119797215 -32740044 - RMER19B LTR ERVK -44 858 1 7 1498 697 311 41 0 chr5 119798709 119798905 -32738354 + ID_B1 SINE B4 2 205 -19 7 1498 507 107 0 0 chr5 119798905 119798989 -32738270 + (GA)n Simple_repeat Simple_repeat 2 85 0 7 1498 306 300 101 48 chr5 119798989 119799157 -32738102 + HAL1-3A_ME LINE L1 1998 2174 -684 7 1498 189 121 0 0 chr5 119799232 119799265 -32737994 + (CAA)n Simple_repeat Simple_repeat 1 33 0 7 1498 1241 308 32 54 chr5 119799295 119799738 -32737521 - MLT1G3 LTR MaLR -45 550 118 7 187 604 308 1 48 chr5 119799747 119799944 -32737315 + B4A SINE B4 1 186 -106 7 1499 860 132 33 0 chr5 119800039 119800251 -32737008 + (CATATA)n Simple_repeat Simple_repeat 1 218 0 7 1499 25 31 0 0 chr5 119800255 119800287 -32736972 + AT_rich Low_complexity Low_complexity 1 32 0 7 1499 389 265 12 0 chr5 119801078 119801161 -32736098 + B4 SINE B4 3 86 -206 7 1499 946 92 17 11 chr5 119801171 119801347 -32735912 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 7 1499 347 168 11 0 chr5 119801347 119801442 -32735817 + GA-rich Low_complexity Low_complexity 1 96 0 7 1499 963 111 0 32 chr5 119801458 119801644 -32735615 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 7 1499 936 93 23 17 chr5 119801671 119801846 -32735413 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 7 1499 686 222 135 47 chr5 119801848 119802018 -32735241 + B4 SINE B4 108 292 0 7 1499 473 176 37 0 chr5 119802634 119802770 -32734489 + (TGGA)n Simple_repeat Simple_repeat 2 142 0 7 1499 750 161 17 0 chr5 119802782 119802956 -32734303 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 7 1499 375 23 0 0 chr5 119803069 119803113 -32734146 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 7 1499 239 310 17 17 chr5 119803207 119803325 -32733934 - Lx9 LINE L1 -648 6996 6879 7 1499 407 269 141 18 chr5 119803601 119803764 -32733495 + MTEa LTR MaLR 197 379 0 7 1499 344 209 298 16 chr5 119804134 119804280 -32732979 + Lx4B LINE L1 5663 5873 -1185 7 1499 3304 273 76 68 chr5 119804391 119805925 -32731334 + Lx9 LINE L1 6097 7643 -1 7 1499 203 378 58 29 chr5 119806317 119806456 -32730803 - L3b LINE CR1 -97 385 243 7 1499 285 299 39 0 chr5 119807277 119807354 -32729905 + MIRm SINE MIR 85 164 -112 7 1499 1104 88 0 39 chr5 119807567 119807720 -32729539 + B1_Mm SINE Alu 1 147 0 7 1499 222 250 88 0 chr5 119808173 119808241 -32729018 + MIR SINE MIR 154 227 -35 7 1499 680 244 45 40 chr5 119808448 119808670 -32728589 + HAL1-2a_MD LINE L1 2322 2544 -480 7 1499 292 340 10 10 chr5 119808729 119808827 -32728432 + B4A SINE B4 13 110 -182 7 1499 425 275 4 39 chr5 119808929 119809081 -32728178 - MIRb SINE MIR -108 160 10 7 1499 181 345 39 63 chr5 119809358 119809485 -32727774 + MIRc SINE MIR 60 183 -85 7 1499 260 291 12 12 chr5 119809513 119809593 -32727666 + MIRm SINE MIR 27 106 -170 7 1499 402 241 0 0 chr5 119809934 119810013 -32727246 + ID4 SINE ID 3 81 -2 7 1499 311 173 71 47 chr5 119810324 119810409 -32726850 - PB1D10 SINE Alu -22 95 9 7 1499 549 30 0 0 chr5 119810457 119810524 -32726735 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 1499 722 261 19 6 chr5 119810536 119810694 -32726565 - B3A SINE B2 -38 160 1 7 1499 568 325 26 16 chr5 119810703 119810897 -32726362 - B4 SINE B4 -73 219 24 7 1499 521 196 9 36 chr5 119810899 119811010 -32726249 - PB1D10 SINE Alu -1 116 9 7 1499 222 37 0 0 chr5 119811199 119811226 -32726033 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 7 1499 366 250 18 46 chr5 119811613 119811722 -32725537 - MER121 Unknown Unknown -100 312 207 7 1499 1073 230 9 9 chr5 119812050 119812274 -32724985 - ID_B1 SINE B4 0 224 1 7 1499 272 279 122 15 chr5 119812295 119812426 -32724833 - MER20 DNA MER1_type -3 216 72 7 1499 228 355 71 18 chr5 119812692 119812804 -32724455 + ORR1E LTR MaLR 32 149 -210 7 1499 848 114 0 7 chr5 119813170 119813320 -32723939 + (TC)n Simple_repeat Simple_repeat 2 150 0 7 1499 319 174 17 0 chr5 119813333 119813448 -32723811 + CT-rich Low_complexity Low_complexity 2 118 0 7 1499 371 256 68 23 chr5 119813452 119813584 -32723675 - HAL1-3A_ME LINE L1 -743 2115 1978 7 1499 201 125 0 48 chr5 119813585 119813627 -32723632 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 7 1499 198 198 36 0 chr5 119813629 119813740 -32723519 + (TCTG)n Simple_repeat Simple_repeat 2 116 0 7 1499 442 142 0 40 chr5 119813719 119813844 -32723415 + CT-rich Low_complexity Low_complexity 1 120 0 7 1499 468 51 0 0 chr5 119813844 119813903 -32723356 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1499 355 292 120 39 chr5 119814071 119814605 -32722654 + L1M4 LINE L1 5027 5600 -578 7 1499 378 320 130 12 chr5 119814614 119814867 -32722392 + B4A SINE B4 2 284 -8 7 1499 309 376 0 0 chr5 119814877 119815026 -32722233 + (CA)n Simple_repeat Simple_repeat 1 149 0 7 1499 187 287 22 44 chr5 119815454 119815545 -32721714 - MIRc SINE MIR -115 153 65 7 1499 459 298 149 0 chr5 119815640 119815801 -32721458 - MER3 DNA MER1_type -3 206 22 7 1499 568 283 152 67 chr5 119815918 119816101 -32721158 + B4A SINE B4 1 224 -68 7 1499 819 119 0 0 chr5 119816101 119816227 -32721032 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 7 1499 568 283 152 67 chr5 119816227 119816312 -32720947 + B4A SINE B4 225 292 0 7 1499 375 105 0 0 chr5 119816315 119816372 -32720887 + (CA)n Simple_repeat Simple_repeat 2 58 0 7 1499 247 104 0 40 chr5 119816925 119816975 -32720284 + (GGAA)n Simple_repeat Simple_repeat 4 51 0 7 1499 829 188 16 0 chr5 119817118 119817373 -32719886 + (TGGA)n Simple_repeat Simple_repeat 1 259 0 7 1499 200 273 9 0 chr5 119817389 119817499 -32719760 + (TGGA)n Simple_repeat Simple_repeat 3 113 0 7 1499 294 29 0 0 chr5 119817518 119817553 -32719706 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1499 528 16 0 0 chr5 119817723 119817784 -32719475 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 7 1499 492 252 53 8 chr5 119817985 119818117 -32719142 - B1F SINE Alu -5 144 7 7 1499 325 217 0 0 chr5 119819594 119819654 -32717605 + RSINE1 SINE B4 2 61 -104 7 1499 420 280 67 48 chr5 119819649 119819859 -32717400 - RMER15 LTR ERVL -5 570 357 7 1499 813 21 0 0 chr5 119819974 119820069 -32717190 + (GA)n Simple_repeat Simple_repeat 1 95 0 7 1499 2120 125 0 10 chr5 119820092 119820406 -32716853 + MTC LTR MaLR 103 413 -8 7 1499 622 292 75 12 chr5 119821767 119821940 -32715319 - B3A SINE B2 -1 215 32 7 1499 582 41 0 0 chr5 119821942 119822015 -32715244 + (TC)n Simple_repeat Simple_repeat 1 73 0 7 1499 447 19 0 0 chr5 119822149 119822201 -32715058 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1499 249 337 67 61 chr5 119822504 119822684 -32714575 + MIRb SINE MIR 88 268 0 7 1499 942 137 0 21 chr5 119822727 119822869 -32714390 - B1_Mur2 SINE Alu -1 148 10 7 1499 559 303 39 53 chr5 119822869 119822933 -32714326 - ID_B1 SINE B4 -1 223 21 7 1499 201 147 0 0 chr5 119822948 119822982 -32714277 + (TTG)n Simple_repeat Simple_repeat 2 35 0 7 1499 596 254 0 16 chr5 119823333 119823446 -32713813 + ID_B1 SINE B4 100 211 -13 7 1499 302 0 0 26 chr5 119823446 119823485 -32713774 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 7 1499 294 95 0 0 chr5 119823706 119823748 -32713511 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1499 264 296 116 22 chr5 119824480 119824618 -32712641 - MER117 DNA MER1_type -43 154 4 7 1499 267 273 71 134 chr5 119824936 119825063 -32712196 - MLT1H LTR MaLR 0 549 431 7 1499 490 286 14 70 chr5 119825119 119825262 -32711997 + B4 SINE B4 12 146 -146 7 1499 369 0 0 0 chr5 119825343 119825384 -32711875 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1499 237 264 11 33 chr5 119825859 119825933 -32711326 + CT-rich Low_complexity Low_complexity 18 90 0 7 1499 900 0 0 0 chr5 119825933 119826033 -32711226 + (TTCTC)n Simple_repeat Simple_repeat 5 104 0 7 1499 237 264 11 33 chr5 119826033 119826048 -32711211 + polypyrimidine Low_complexity Low_complexity 3 17 0 7 1499 312 83 0 0 chr5 119826066 119826114 -32711145 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1499 440 254 21 91 chr5 119826129 119826272 -32710987 - RSINE1 SINE B4 -17 148 16 8 1499 600 358 34 17 chr5 119826312 119826460 -32710799 - B4A SINE B4 -55 237 87 8 1499 615 27 0 0 chr5 119826460 119826533 -32710726 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 1499 600 358 34 17 chr5 119826533 119826617 -32710642 - B4A SINE B4 -206 86 2 8 1499 895 255 64 4 chr5 119827031 119827267 -32709992 - MTEb LTR MaLR -129 250 1 8 1499 735 148 0 0 chr5 119828013 119828121 -32709138 + ID_B1 SINE B4 97 204 -20 8 1499 277 358 8 39 chr5 119828020 119828148 -32709111 - YREP_Mm Unknown Unknown -1518 294 171 8 1499 270 0 0 0 chr5 119828838 119828868 -32708391 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1499 322 272 86 11 chr5 119828930 119829023 -32708236 + PB1D10 SINE Alu 1 100 -17 8 1499 311 248 7 28 chr5 119829061 119829206 -32708053 + GA-rich Low_complexity Low_complexity 3 144 0 8 1499 1059 136 0 0 chr5 119829533 119829860 -32707399 + (TGGA)n Simple_repeat Simple_repeat 1 327 0 8 1499 431 263 17 93 chr5 119831162 119831334 -32705925 + RSINE1 SINE B4 3 161 -4 8 1499 943 288 93 12 chr5 119831951 119832274 -32704985 + MTEa LTR MaLR 1 349 -30 8 1499 425 222 0 12 chr5 119832393 119832475 -32704784 + PB1D10 SINE Alu 1 81 -36 8 1499 229 221 14 14 chr5 119832501 119832570 -32704689 + Lx7 LINE L1 7627 7695 -1 8 1499 571 213 0 19 chr5 119832605 119832763 -32704496 + GA-rich Low_complexity Low_complexity 3 157 0 8 1499 782 225 94 10 chr5 119832906 119833108 -32704151 + ID_B1 SINE B4 1 219 -5 8 1499 21 0 0 0 chr5 119833109 119833130 -32704129 + AT_rich Low_complexity Low_complexity 1 21 0 8 1499 236 365 82 20 chr5 119833206 119833304 -32703955 + MLT1K LTR MaLR 290 393 -202 8 1499 198 71 0 0 chr5 119833617 119833645 -32703614 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 8 1499 719 224 88 39 chr5 119833762 119833943 -32703316 - B3A SINE B2 -8 190 1 8 1499 426 252 0 55 chr5 119834934 119835043 -32702216 + PB1D10 SINE Alu 15 117 0 8 1499 198 152 0 0 chr5 119835258 119835291 -32701968 - MIRc SINE MIR -38 230 198 8 1499 929 277 61 4 chr5 119835629 119835908 -32701351 + ORR1E LTR MaLR 5 299 -60 8 1499 257 299 55 55 chr5 119836476 119836621 -32700638 + MER103 DNA DNA 20 164 -2 8 1499 227 289 56 67 chr5 119836845 119836934 -32700325 + MT2B2 LTR ERVL 154 241 -343 8 1499 446 211 31 10 chr5 119836856 119836952 -32700307 + PB1D10 SINE Alu 6 103 -14 8 1499 308 114 0 0 chr5 119837589 119837633 -32699626 - HAL1-3A_ME LINE L1 -839 2019 1976 8 1499 506 174 7 0 chr5 119837640 119837778 -32699481 + (TG)n Simple_repeat Simple_repeat 2 140 0 8 1499 426 229 156 7 chr5 119837803 119837944 -32699315 - ID_B1 SINE B4 -42 182 21 8 1499 217 186 54 54 chr5 119838338 119838369 -32698890 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 8 1499 351 0 0 0 chr5 119838369 119838408 -32698851 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1499 217 186 54 54 chr5 119838408 119838450 -32698809 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 8 1499 432 290 15 31 chr5 119838569 119838642 -32698617 - B4 SINE B4 -1 291 152 8 1499 324 202 165 0 chr5 119838642 119838721 -32698538 - PB1D7 SINE Alu -8 112 21 8 1499 432 290 15 31 chr5 119838721 119838761 -32698498 - B4 SINE B4 -1 151 71 8 1499 885 176 0 7 chr5 119838761 119838898 -32698361 - B1_Mur1 SINE Alu -13 136 1 8 1499 265 274 0 64 chr5 119838903 119838981 -32698278 - ID2 SINE ID -7 76 4 8 1499 435 38 0 0 chr5 119839237 119839290 -32697969 + (GAAAA)n Simple_repeat Simple_repeat 2 54 0 8 1499 267 103 0 0 chr5 119839705 119839744 -32697515 + (T)n Simple_repeat Simple_repeat 1 39 0 8 1499 23 0 0 0 chr5 119839907 119839930 -32697329 + AT_rich Low_complexity Low_complexity 1 23 0 8 1499 189 0 0 0 chr5 119839970 119839991 -32697268 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1499 464 0 18 0 chr5 119840709 119840765 -32696494 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1499 549 339 52 43 chr5 119840863 119841187 -32696072 - ORR1E LTR MaLR -15 344 18 8 1499 924 285 5 0 chr5 119842066 119842273 -32694986 + B4 SINE B4 85 292 0 8 1499 274 281 0 23 chr5 119842297 119842468 -32694791 + (CA)n Simple_repeat Simple_repeat 1 167 0 8 1499 346 291 79 159 chr5 119842523 119842813 -32694446 + MLT1A0 LTR MaLR 79 345 -20 8 1499 890 284 14 5 chr5 119843655 119843878 -32693381 + B4A SINE B4 44 268 -24 8 1499 387 0 0 0 chr5 119843938 119843981 -32693278 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1499 195 114 0 0 chr5 119844463 119844498 -32692761 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1499 657 267 65 65 chr5 119844502 119844686 -32692573 - B3A SINE B2 -5 190 7 8 1499 207 0 0 0 chr5 119844703 119844726 -32692533 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1499 305 261 78 9 chr5 119844728 119844844 -32692415 - L1MA6 LINE L1 -364 5936 5813 8 1499 706 328 60 42 chr5 119844867 119845150 -32692109 + MLT1G LTR MaLR 40 327 -264 8 1499 271 343 34 29 chr5 119845171 119845302 -32691957 + MLT1G LTR MaLR 417 538 -57 8 1499 769 302 75 43 chr5 119845302 119845648 -32691611 + ORR1E LTR MaLR 3 359 0 8 1499 426 255 0 10 chr5 119845752 119845851 -32691408 + B3 SINE B2 119 216 0 8 1499 296 229 14 0 chr5 119845895 119845965 -32691294 + MLT1A0 LTR MaLR 1 71 -294 8 1499 693 175 0 0 chr5 119846319 119846456 -32690803 + (TGGA)n Simple_repeat Simple_repeat 2 138 0 8 1499 996 112 11 17 chr5 119846490 119846671 -32690588 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 8 1499 1101 100 126 11 chr5 119847439 119847621 -32689638 + ORR1B2 LTR MaLR 1 203 -164 8 1499 507 275 103 147 chr5 119848209 119848605 -32688654 + MTE2a LTR MaLR 1 379 0 8 1499 252 315 57 93 chr5 119848833 119848973 -32688286 + MIRm SINE MIR 13 147 -129 8 1499 669 230 0 0 chr5 119849347 119849525 -32687734 + (CA)n Simple_repeat Simple_repeat 1 178 0 8 1499 836 178 0 6 chr5 119849563 119849744 -32687515 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1499 285 29 0 0 chr5 119850082 119850116 -32687143 + (GGA)n Simple_repeat Simple_repeat 3 36 0 8 1499 658 34 22 0 chr5 119850240 119850329 -32686930 + (TC)n Simple_repeat Simple_repeat 1 91 0 8 1499 253 302 8 32 chr5 119851206 119851329 -32685930 + GA-rich Low_complexity Low_complexity 2 121 0 8 1499 384 228 0 0 chr5 119851740 119851819 -32685440 + B1F SINE Alu 71 149 0 8 1499 302 206 29 14 chr5 119851883 119851952 -32685307 + ID4_ SINE ID 1 70 -13 8 1499 653 316 87 55 chr5 119852299 119852991 -32684268 + L1MC1 LINE L1 5620 6333 0 8 1499 531 247 5 5 chr5 119853099 119853231 -32684028 + B1F2 SINE Alu 10 141 -8 8 1499 284 246 32 16 chr5 119853245 119853307 -32683952 + B4 SINE B4 7 69 -223 8 1499 279 0 0 0 chr5 119853322 119853353 -32683906 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1499 215 153 83 0 chr5 119853426 119853498 -32683761 + (CATA)n Simple_repeat Simple_repeat 4 81 0 8 1499 844 190 0 26 chr5 119853525 119853676 -32683583 + B1_Mus2 SINE Alu 1 147 0 8 1499 310 269 23 78 chr5 119853966 119854095 -32683164 + MLT1A1 LTR MaLR 1 122 -286 8 1499 499 279 94 20 chr5 119854594 119854792 -32682467 + B3A SINE B2 8 203 -13 8 1499 267 282 0 14 chr5 119854792 119854864 -32682395 + (CATA)n Simple_repeat Simple_repeat 1 71 0 8 1499 410 274 0 6 chr5 119854870 119855039 -32682220 + (CA)n Simple_repeat Simple_repeat 1 168 0 8 1499 189 250 0 0 chr5 119855055 119855115 -32682144 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1499 1383 107 0 0 chr5 119855129 119855316 -32681943 - B2_Mm2 SINE B2 -7 188 2 8 1499 323 327 20 0 chr5 119855463 119855564 -32681695 - MIR SINE MIR -61 147 45 8 1499 518 227 57 102 chr5 119855841 119855998 -32681261 + B4 SINE B4 5 154 -138 8 1499 214 321 111 28 chr5 119856056 119856200 -32681059 + MIRb SINE MIR 99 254 -14 8 1499 261 326 97 43 chr5 119856589 119856775 -32680484 + L2b LINE L2 2979 3174 -201 8 1499 513 168 21 21 chr5 119856934 119857176 -32680083 + (TCTCTG)n Simple_repeat Simple_repeat 1 242 0 8 1499 443 187 17 6 chr5 119857165 119857342 -32679917 + CT-rich Low_complexity Low_complexity 2 180 0 8 1499 491 309 21 28 chr5 119857407 119857550 -32679709 - B4A SINE B4 -137 155 14 8 1499 248 342 53 0 chr5 119857556 119857632 -32679627 - RMER30 DNA MER1_type -111 91 12 8 1499 1173 234 73 102 chr5 119857870 119858251 -32679008 - ORR1D2 LTR MaLR 0 370 1 8 1499 821 261 4 65 chr5 119858645 119858875 -32678384 + ID_B1 SINE B4 1 216 -8 8 1499 292 274 0 59 chr5 119859753 119859854 -32677405 - B1_Mm SINE Alu -52 95 1 8 1499 656 219 7 21 chr5 119859854 119859939 -32677320 - B4 SINE B4 -209 83 1 8 1499 330 132 0 0 chr5 119862349 119862402 -32674857 + (TCG)n Simple_repeat Simple_repeat 2 54 0 8 1499 216 0 0 0 chr5 119862527 119862551 -32674708 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1499 514 265 5 103 chr5 119862818 119863038 -32674221 - MTE2a LTR MaLR -183 196 1 8 1499 513 201 5 38 chr5 119863090 119863276 -32673983 + CT-rich Low_complexity Low_complexity 1 180 0 8 1499 519 95 0 0 chr5 119863642 119863716 -32673543 + (TCCA)n Simple_repeat Simple_repeat 4 77 0 8 1499 769 256 11 43 chr5 119863881 119864069 -32673190 + B3A SINE B2 1 182 -16 8 1499 647 149 7 0 chr5 119864896 119865050 -32672209 + GA-rich Low_complexity Low_complexity 2 156 0 8 1499 632 124 9 0 chr5 119865165 119865270 -32671989 + (TC)n Simple_repeat Simple_repeat 1 106 0 8 1499 657 313 29 98 chr5 119865309 119865585 -32671674 - B4 SINE B4 0 292 36 8 1499 206 302 16 0 chr5 119866141 119866204 -32671055 + L2a LINE L2 3358 3421 -5 8 1499 181 277 143 41 chr5 119866364 119866462 -32670797 + MIRb SINE MIR 26 133 -135 8 1499 25 0 0 0 chr5 119866632 119866657 -32670602 + AT_rich Low_complexity Low_complexity 1 25 0 8 1499 791 244 11 38 chr5 119866664 119866866 -32670393 - B3A SINE B2 -26 190 5 9 1499 302 136 30 0 chr5 119866920 119866986 -32670273 + T-rich Low_complexity Low_complexity 2 69 0 9 1499 722 324 119 28 chr5 119867007 119867394 -32669865 - MLT1F LTR MaLR -84 464 43 9 1499 647 260 17 75 chr5 119867453 119867748 -32669511 + BGLII_B LTR ERVK 1 278 -163 9 1499 414 148 0 0 chr5 119867748 119867849 -32669410 + (GGAGAA)n Simple_repeat Simple_repeat 1 101 0 9 1499 762 292 7 35 chr5 119867859 119868114 -32669145 + BGLII_B LTR ERVK 165 418 -27 9 1499 322 257 103 19 chr5 119868319 119868426 -32668833 + PB1D10 SINE Alu 1 116 -33 9 1499 299 333 23 23 chr5 119868504 119868636 -32668623 + MLT1N2 LTR MaLR 430 561 -1 9 1499 257 300 41 72 chr5 119869182 119869279 -32667980 + B4A SINE B4 2 95 -197 9 1499 504 0 0 0 chr5 119869291 119869347 -32667912 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 1499 420 20 0 0 chr5 119869734 119869783 -32667476 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1499 928 254 56 48 chr5 119869805 119870074 -32667185 - B4 SINE B4 -21 271 1 9 1499 537 261 0 59 chr5 119871394 119871484 -32665775 + RSINE1 SINE B4 51 140 -25 9 1499 186 43 0 0 chr5 119871484 119871507 -32665752 + (CATG)n Simple_repeat Simple_repeat 2 24 0 9 1499 537 261 0 59 chr5 119871507 119871534 -32665725 + RSINE1 SINE B4 141 161 -4 9 1499 24 32 0 0 chr5 119871537 119871568 -32665691 + AT_rich Low_complexity Low_complexity 1 31 0 9 1499 315 324 19 0 chr5 119871875 119871980 -32665279 + MIRb SINE MIR 156 262 -6 9 1499 270 0 0 0 chr5 119872062 119872092 -32665167 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1499 480 35 0 0 chr5 119872512 119872570 -32664689 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 9 1499 955 141 11 11 chr5 119872577 119872757 -32664502 + GA-rich Low_complexity Low_complexity 1 180 0 9 1499 269 416 49 13 chr5 119873447 119873671 -32663588 + MLT1I LTR MaLR 35 266 -145 9 1499 1019 147 0 0 chr5 119874027 119874183 -32663076 - URR1B DNA MER1_type 0 225 70 9 1499 472 206 5 236 chr5 119874177 119874368 -32662891 + MTEa LTR MaLR 5 151 -228 9 1499 207 0 0 0 chr5 119874866 119874889 -32662370 + (TTA)n Simple_repeat Simple_repeat 2 24 0 9 1499 328 316 20 0 chr5 119874929 119875027 -32662232 + Charlie8 DNA MER1_type 124 223 -2205 9 1499 435 267 30 36 chr5 119875725 119875892 -32661367 + GA-rich Low_complexity Low_complexity 1 166 0 9 1499 227 337 12 24 chr5 119876324 119876409 -32660850 - MIR SINE MIR -164 98 15 9 1499 293 291 39 10 chr5 119876466 119876570 -32660689 + MLT1J LTR MaLR 59 165 -347 9 1499 285 29 0 0 chr5 119877273 119877307 -32659952 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 9 1499 189 0 0 0 chr5 119878283 119878304 -32658955 + (CAAT)n Simple_repeat Simple_repeat 1 21 0 9 1499 183 272 85 12 chr5 119878345 119878427 -32658832 + MIRc SINE MIR 64 151 -117 9 1499 284 330 182 82 chr5 119878604 119878895 -32658364 + MLT1A0 LTR MaLR 18 337 -28 9 1499 274 146 12 12 chr5 119878895 119878978 -32658281 + T-rich Low_complexity Low_complexity 1 83 0 9 1499 853 258 66 112 chr5 119879389 119879826 -32657433 + MTD LTR MaLR 1 417 -2 9 1499 865 296 75 0 chr5 119880020 119880300 -32656959 - RMER15 LTR ERVL 0 575 275 9 1499 614 13 13 0 chr5 119880700 119880775 -32656484 + (TC)n Simple_repeat Simple_repeat 1 76 0 9 1499 358 334 38 52 chr5 119881520 119881768 -32655491 - MIR SINE MIR -8 254 11 9 1499 1200 262 124 15 chr5 119881950 119882426 -32654833 + Lx8 LINE L1 6946 7473 0 9 1499 324 0 0 0 chr5 119882615 119882651 -32654608 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 9 1499 269 357 26 18 chr5 119882686 119882800 -32654459 + ID_B1 SINE B4 85 199 -25 9 1499 1500 226 64 61 chr5 119882797 119883174 -32654085 + MTD LTR MaLR 42 419 0 9 1499 242 320 26 39 chr5 119883174 119883222 -32654037 + B1F SINE Alu 90 136 -13 9 1499 300 275 6 17 chr5 119883222 119883408 -32653851 + GA-rich Low_complexity Low_complexity 1 183 0 9 1499 213 39 0 0 chr5 119884066 119884092 -32653167 + (TATG)n Simple_repeat Simple_repeat 2 27 0 9 1499 241 344 150 68 chr5 119884328 119884437 -32652822 + MamRep434 DNA TcMar 10 110 -316 9 1499 468 0 0 0 chr5 119884437 119884489 -32652770 + (GA)n Simple_repeat Simple_repeat 2 53 0 9 1499 241 344 150 68 chr5 119884489 119884613 -32652646 + MamRep434 DNA TcMar 111 261 -165 9 1499 212 386 17 26 chr5 119884669 119884786 -32652473 + MIRb SINE MIR 32 147 -121 9 1499 1140 185 20 10 chr5 119885100 119885302 -32651957 - B3 SINE B2 -9 207 4 9 1499 273 146 0 0 chr5 119885647 119885695 -32651564 + (TCTG)n Simple_repeat Simple_repeat 1 48 0 9 1499 384 280 83 18 chr5 119885767 119885876 -32651383 - B4 SINE B4 -176 116 1 9 1499 937 113 0 11 chr5 119886446 119886625 -32650634 + (TG)n Simple_repeat Simple_repeat 2 178 0 9 1499 300 167 18 18 chr5 119886625 119886680 -32650579 - HAL1-3A_ME LINE L1 -828 2030 1976 9 1499 416 206 0 7 chr5 119886685 119886827 -32650432 + (TG)n Simple_repeat Simple_repeat 2 142 0 9 1499 213 260 112 38 chr5 119886948 119887028 -32650231 + B4 SINE B4 11 96 -196 9 1499 180 0 0 0 chr5 119887250 119887270 -32649989 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1499 2453 203 18 108 chr5 119887423 119888092 -32649167 + RMER19C LTR ERVK 3 611 0 9 1499 809 204 32 87 chr5 119888120 119888372 -32648887 - MTE2a LTR MaLR -138 241 4 9 1499 234 0 0 0 chr5 119889125 119889151 -32648108 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 1499 289 288 0 0 chr5 119889183 119889263 -32647996 + ID4 SINE ID 3 82 -1 9 1499 741 276 61 9 chr5 119889279 119889491 -32647768 + ID_B1 SINE B4 2 224 0 9 1499 575 290 32 6 chr5 119889830 119889986 -32647273 + RSINE1 SINE B4 4 163 -2 9 1499 390 139 0 0 chr5 119890769 119890841 -32646418 + (TG)n Simple_repeat Simple_repeat 1 72 0 9 1499 302 269 153 22 chr5 119890932 119891069 -32646190 + HAL1-3A_ME LINE L1 2285 2439 -419 9 1499 478 206 30 0 chr5 119891069 119891200 -32646059 + G-rich Low_complexity Low_complexity 4 138 0 9 1499 375 277 108 10 chr5 119891278 119891492 -32645767 + L1MA9 LINE L1 5653 5885 -406 9 1499 541 292 149 35 chr5 119891685 119891859 -32645400 - B3A SINE B2 -4 194 1 9 1499 223 171 0 0 chr5 119891990 119892031 -32645228 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1499 522 286 61 7 chr5 119892811 119892959 -32644300 + MLT1H1 LTR MaLR 400 555 0 9 1499 1747 180 151 0 chr5 119893447 119893797 -32643462 - MTD LTR MaLR -16 403 1 9 1499 831 289 68 18 chr5 119893809 119894122 -32643137 + ORR1E LTR MaLR 26 379 0 9 1499 21 36 0 0 chr5 119894628 119894656 -32642603 + AT_rich Low_complexity Low_complexity 1 28 0 9 1499 238 305 25 118 chr5 119894892 119895011 -32642248 + MIR SINE MIR 45 152 -124 9 1499 355 250 28 19 chr5 119895018 119895124 -32642135 - PB1D7 SINE Alu -11 109 3 9 1499 269 333 45 18 chr5 119895297 119895407 -32641852 - MIR3 SINE MIR -15 193 81 9 1499 378 0 0 0 chr5 119895438 119895480 -32641779 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1499 422 352 17 17 chr5 119895697 119895876 -32641383 + Lx8 LINE L1 7129 7307 -166 9 1499 783 183 2 2 chr5 119895892 119896294 -32640965 + (CA)n Simple_repeat Simple_repeat 1 402 0 9 1499 303 170 19 0 chr5 119896294 119896347 -32640912 + HAL1-3A_ME LINE L1 1974 2027 -831 9 1499 323 186 0 17 chr5 119896352 119896412 -32640847 + HAL1-3A_ME LINE L1 1976 2034 -824 9 1499 225 250 175 0 chr5 119896444 119896524 -32640735 - MIR SINE MIR -77 131 38 9 1499 422 267 37 19 chr5 119897258 119897365 -32639894 + B4 SINE B4 2 110 -182 9 1499 326 330 6 6 chr5 119897530 119897707 -32639552 + (GACTG)n Simple_repeat Simple_repeat 4 180 0 9 1499 668 286 10 55 chr5 119897730 119897930 -32639329 + B4A SINE B4 100 290 -2 9 1499 213 269 0 0 chr5 119898095 119898173 -32639086 + GA-rich Low_complexity Low_complexity 3 80 0 9 1499 371 229 36 122 chr5 119899884 119900023 -32637236 + MT2B LTR ERVL 138 264 -337 9 1499 502 262 7 66 chr5 119899909 119899923 -32637336 + ID_B1 SINE B4 82 219 -1 9 1499 886 146 0 23 chr5 119899923 119900056 -32637203 + B1_Mur3 SINE Alu 15 144 -5 9 1499 600 200 0 0 chr5 119900064 119900189 -32637070 + GA-rich Low_complexity Low_complexity 1 125 0 9 1499 582 275 8 0 chr5 119900299 119900419 -32636840 + RSINE1 SINE B4 27 147 -18 9 1499 219 200 18 18 chr5 119900446 119900502 -32636757 + GA-rich Low_complexity Low_complexity 3 58 0 9 1499 237 385 74 7 chr5 119900800 119900949 -32636310 - MLT1A0 LTR MaLR 0 365 207 9 1499 300 220 137 20 chr5 119900964 119901066 -32636193 - MLT1A0 LTR MaLR -222 143 30 9 1499 2269 163 185 10 chr5 119901332 119901829 -32635430 + RMER4B LTR ERVK 2 585 0 9 1499 297 226 4 41 chr5 119901937 119902205 -32635054 + CT-rich Low_complexity Low_complexity 1 257 0 9 1499 572 271 44 78 chr5 119902780 119902984 -32634275 + B3A SINE B2 1 197 -1 9 1499 806 178 7 15 chr5 119903022 119903159 -32634100 + B1_Mur1 SINE Alu 14 149 0 9 1499 202 232 18 0 chr5 119903585 119903697 -32633562 + (CA)n Simple_repeat Simple_repeat 2 115 0 9 1499 378 0 0 0 chr5 119903829 119903871 -32633388 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1499 265 246 88 0 chr5 119903967 119904024 -32633235 + BC1_Mm scRNA scRNA 8 69 -83 9 1499 762 260 0 7 chr5 119904862 119905013 -32632246 + RSINE1 SINE B4 2 151 -14 9 1499 300 70 0 0 chr5 119906405 119906448 -32630811 + (T)n Simple_repeat Simple_repeat 1 43 0 9 1499 631 218 0 19 chr5 119906721 119907243 -32630016 + (CA)n Simple_repeat Simple_repeat 1 511 0 9 1499 505 318 25 19 chr5 119907624 119907781 -32629478 + RSINE1 SINE B4 8 165 0 9 1499 1827 149 43 28 chr5 119908386 119908711 -32628548 - ORR1B1 LTR MaLR 0 394 65 9 1499 812 211 21 67 chr5 119908710 119908903 -32628356 - RLTR11A LTR ERVK -237 291 108 1 1499 515 58 14 0 chr5 119908902 119908971 -32628288 - RLTR11A LTR ERVK -351 177 108 1 1499 1166 162 21 26 chr5 119908978 119909212 -32628047 + RLTR11A LTR ERVK 279 511 -17 1 1499 541 309 42 36 chr5 119909648 119910032 -32627227 + MLT1F LTR MaLR 40 555 -14 1 1499 554 221 387 42 chr5 119910185 119910402 -32626857 - B4 SINE B4 0 292 1 1 1499 333 0 0 0 chr5 119910430 119910467 -32626792 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1499 525 220 181 32 chr5 119910489 119910644 -32626615 - B3A SINE B2 -20 178 1 1 1499 21 57 0 0 chr5 119910871 119910906 -32626353 + AT_rich Low_complexity Low_complexity 1 35 0 1 1499 1039 276 60 28 chr5 119911093 119911376 -32625883 + B4A SINE B4 1 292 0 1 1499 501 17 0 0 chr5 119911381 119911439 -32625820 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1499 283 363 17 28 chr5 119912671 119912847 -32624412 + MER5B DNA MER1_type 4 177 -1 1 1499 778 271 0 136 chr5 119913905 119914178 -32623081 + B4 SINE B4 34 269 -23 1 1499 264 30 0 0 chr5 119914178 119914211 -32623048 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1499 336 148 0 0 chr5 119914288 119914349 -32622910 + (A)n Simple_repeat Simple_repeat 1 61 0 1 1499 180 0 0 0 chr5 119914351 119914371 -32622888 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1499 327 328 0 25 chr5 119915324 119915499 -32621760 + MER20 DNA MER1_type 3 219 0 1 1499 404 302 39 109 chr5 119915709 119915992 -32621267 - ORR1E LTR MaLR -13 346 84 1 1499 243 310 44 33 chr5 119916258 119916348 -32620911 - B3 SINE B2 -13 203 113 1 1499 550 309 172 21 chr5 119916308 119916460 -32620799 - B4A SINE B4 -10 282 104 1 1499 447 19 0 0 chr5 119916460 119916512 -32620747 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1499 550 309 172 21 chr5 119916512 119916597 -32620662 - B4A SINE B4 -189 103 11 1 1499 394 321 137 16 chr5 119916873 119917129 -32620130 + B4A SINE B4 1 287 -5 1 1499 544 202 47 89 chr5 119917754 119917944 -32619315 + ORR1E LTR MaLR 11 192 -167 1 1499 1315 183 32 29 chr5 119917888 119918169 -32619090 + MT2B LTR ERVL 320 601 0 1 1499 676 271 13 0 chr5 119918501 119918656 -32618603 + RSINE1 SINE B4 3 159 -6 1 1499 412 314 73 144 chr5 119918951 119919416 -32617843 + MLT1K LTR MaLR 4 435 -160 1 1499 741 285 28 14 chr5 119919810 119920098 -32617161 + L1M2 LINE L1 4443 4734 -1409 1 1499 244 264 11 69 chr5 119920220 119920395 -32616864 + (CAACC)n Simple_repeat Simple_repeat 2 166 0 1 1499 245 244 47 47 chr5 119920320 119920492 -32616767 + (CCCTAA)n Simple_repeat Simple_repeat 5 176 0 1 1499 476 212 11 62 chr5 119920415 119920640 -32616619 + (CAACC)n Simple_repeat Simple_repeat 1 213 0 1 1499 336 260 76 8 chr5 119920758 119920890 -32616369 + L1M2 LINE L1 5611 5751 -438 1 1499 263 93 23 0 chr5 119920891 119920934 -32616325 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 1 1499 225 0 0 0 chr5 119921066 119921091 -32616168 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1499 24 53 0 0 chr5 119921107 119921145 -32616114 + AT_rich Low_complexity Low_complexity 1 38 0 1 1499 732 178 23 8 chr5 119921147 119921277 -32615982 + B1_Mur1 SINE Alu 3 134 -15 1 1499 718 262 40 0 chr5 119921441 119921643 -32615616 + Lx8 LINE L1 7165 7374 -99 1 1499 188 186 90 103 chr5 119922212 119922290 -32614969 - MIR SINE MIR -114 94 18 1 1499 201 302 153 40 chr5 119922951 119923075 -32614184 + MIRm SINE MIR 11 148 -60 1 1499 250 226 126 97 chr5 119924630 119924733 -32612526 + MLT1A0 LTR MaLR 180 285 -80 1 1499 411 309 146 24 chr5 119925379 119925591 -32611668 + MLT1J LTR MaLR 45 282 -230 1 1499 181 235 32 147 chr5 119925893 119925988 -32611271 + MIRc SINE MIR 47 130 -138 1 1499 368 243 0 144 chr5 119926537 119926662 -32610597 - B1_Mur1 SINE Alu -1 148 42 1 1499 293 140 0 39 chr5 119926662 119926714 -32610545 + (TCTCTG)n Simple_repeat Simple_repeat 1 50 0 1 1499 234 274 0 0 chr5 119926715 119926861 -32610398 + CT-rich Low_complexity Low_complexity 34 179 0 1 1499 429 287 0 0 chr5 119926876 119927204 -32610055 + CT-rich Low_complexity Low_complexity 1 328 0 1 1499 251 137 19 38 chr5 119927242 119927295 -32609964 - B1_Mus1 SINE Alu -88 60 9 1 1499 621 0 0 0 chr5 119927554 119927623 -32609636 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 1 1499 293 279 202 34 chr5 119927713 119927891 -32609368 + LTR33A LTR ERVL 309 516 -4 1 1499 1255 117 97 5 chr5 119928191 119928398 -32608861 + URR1A DNA MER1_type 1 226 0 1 1499 408 20 0 0 chr5 119929005 119929054 -32608205 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1499 315 0 0 0 chr5 119929530 119929565 -32607694 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1499 234 0 0 0 chr5 119929656 119929682 -32607577 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 1 1500 503 295 86 35 chr5 119931241 119931438 -32605821 + ID_B1 SINE B4 1 207 -17 1 1500 223 314 101 20 chr5 119931789 119931904 -32605355 - MIRc SINE MIR -88 188 62 1 1500 198 0 0 0 chr5 119931930 119931952 -32605307 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1500 427 289 30 30 chr5 119932015 119932147 -32605112 + B1F1 SINE Alu 1 132 -17 1 1500 231 327 51 102 chr5 119932147 119932184 -32605075 + MT2B2 LTR ERVL 181 322 -262 1 1500 717 249 33 47 chr5 119932189 119932404 -32604855 + B3 SINE B2 1 212 -4 1 1500 1319 92 0 26 chr5 119932498 119932687 -32604572 + B2_Mm2 SINE B2 2 185 -10 1 1500 195 42 0 0 chr5 119932689 119932713 -32604546 + (CAT)n Simple_repeat Simple_repeat 2 25 0 1 1500 323 277 92 47 chr5 119932749 119933010 -32604249 - MLT1F LTR MaLR -234 345 22 1 1500 533 240 64 82 chr5 119933230 119933437 -32603822 - B4A SINE B4 -71 221 2 1 1500 318 309 26 86 chr5 119933740 119933857 -32603402 - L2b LINE L2 0 3375 3266 1 1500 304 327 10 19 chr5 119933927 119934030 -32603229 + PB1D10 SINE Alu 9 110 -7 1 1500 483 134 41 35 chr5 119934743 119934913 -32602346 + GA-rich Low_complexity Low_complexity 2 172 0 1 1500 626 253 78 0 chr5 119934924 119935078 -32602181 + ID_B1 SINE B4 6 171 -53 1 1500 331 273 26 43 chr5 119935636 119935751 -32601508 + MLT1A1 LTR MaLR 296 408 0 1 1500 1536 251 21 13 chr5 119936058 119936434 -32600825 - MTEa LTR MaLR 0 379 1 1 1500 228 67 0 0 chr5 119936868 119936898 -32600361 - MIRc SINE MIR -122 146 117 1 1500 461 178 17 0 chr5 119937858 119938096 -32599163 + (TG)n Simple_repeat Simple_repeat 1 242 0 1 1500 23 0 0 0 chr5 119938237 119938260 -32598999 + AT_rich Low_complexity Low_complexity 1 23 0 1 1500 403 216 25 6 chr5 119938260 119938423 -32598836 + (TG)n Simple_repeat Simple_repeat 2 167 0 1 1500 273 167 0 18 chr5 119938427 119938482 -32598777 + (TATG)n Simple_repeat Simple_repeat 1 54 0 1 1500 718 304 5 27 chr5 119938482 119938668 -32598591 - B3A SINE B2 -16 182 1 1 1500 836 257 28 24 chr5 119939264 119939475 -32597784 + ID_B1 SINE B4 5 216 -8 1 1500 273 327 111 56 chr5 119939582 119939906 -32597353 - ORR1E LTR MaLR -7 367 26 1 1500 415 332 29 58 chr5 119940087 119940292 -32596967 - MER58A DNA MER1_type -8 216 18 1 1500 248 282 23 12 chr5 119940388 119940474 -32596785 + GA-rich Low_complexity Low_complexity 1 87 0 1 1500 317 278 43 17 chr5 119940885 119941002 -32596257 - MIRb SINE MIR -61 207 88 1 1500 194 289 127 99 chr5 119941494 119941645 -32595614 - MIR SINE MIR -74 194 35 1 1500 521 94 12 0 chr5 119941708 119941793 -32595466 + (TCCA)n Simple_repeat Simple_repeat 4 89 0 1 1500 419 167 0 11 chr5 119941880 119941971 -32595288 + (TCCA)n Simple_repeat Simple_repeat 3 92 0 1 1500 699 226 4 7 chr5 119941988 119942262 -32594997 + (TCCA)n Simple_repeat Simple_repeat 1 273 0 1 1500 210 71 0 0 chr5 119942366 119942394 -32594865 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1 1500 921 266 77 4 chr5 119942437 119942671 -32594588 + B4A SINE B4 1 251 -41 1 1500 234 0 0 0 chr5 119943043 119943069 -32594190 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1500 482 190 0 0 chr5 119943081 119943160 -32594099 + B1_Mur3 SINE Alu 2 80 -69 1 1500 270 116 0 0 chr5 119943166 119943209 -32594050 + (GGA)n Simple_repeat Simple_repeat 2 44 0 1 1500 5135 74 0 3 chr5 119943209 119943861 -32593398 + L1Md_F2 LINE L1 5917 6566 -16 1 1500 917 42 0 8 chr5 119943862 119943981 -32593278 + (GAA)n Simple_repeat Simple_repeat 2 119 0 1 1500 638 256 126 15 chr5 119944142 119944340 -32592919 - ID_B1 SINE B4 0 224 5 1 1500 241 283 171 24 chr5 119944767 119944890 -32592369 - MIR SINE MIR -36 226 86 1 1500 183 325 49 24 chr5 119945043 119945125 -32592134 + MIRm SINE MIR 73 156 -120 1 1500 773 132 7 0 chr5 119945684 119945828 -32591431 + (TC)n Simple_repeat Simple_repeat 2 146 0 1 1500 344 261 0 17 chr5 119945829 119946008 -32591251 + (CA)n Simple_repeat Simple_repeat 2 177 0 1 1500 186 143 0 0 chr5 119946067 119946102 -32591157 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1500 211 125 41 20 chr5 119946288 119946337 -32590922 + GA-rich Low_complexity Low_complexity 4 53 0 1 1500 306 270 217 57 chr5 119946750 119946767 -32590492 + HAL1-3A_ME LINE L1 2023 2035 -823 1 1500 793 313 14 0 chr5 119946767 119946984 -32590275 + ID_B1 SINE B4 3 222 -2 1 1500 306 270 217 57 chr5 119946984 119947123 -32590136 + HAL1-3A_ME LINE L1 2036 2204 -654 1 1500 534 151 0 0 chr5 119947123 119947229 -32590030 + GA-rich Low_complexity Low_complexity 1 106 0 1 1500 271 312 110 14 chr5 119947476 119947622 -32589637 - L2a LINE L2 -262 3164 3005 1 1500 363 227 23 34 chr5 119947917 119948016 -32589243 + L1MA4 LINE L1 5813 5935 -365 1 1500 204 152 0 21 chr5 119948233 119948280 -32588979 + T-rich Low_complexity Low_complexity 5 50 0 1 1500 1062 72 65 0 chr5 119948280 119948419 -32588840 - B1_Mus1 SINE Alu 0 148 1 1 1500 425 318 52 57 chr5 119948434 119948644 -32588615 - B3 SINE B2 -3 213 5 1 1500 424 295 13 45 chr5 119948672 119948828 -32588431 + RSINE1 SINE B4 2 152 -13 1 1500 310 212 0 24 chr5 119948848 119948930 -32588329 + (TCTCTG)n Simple_repeat Simple_repeat 6 85 0 1 1500 502 169 9 18 chr5 119948933 119949159 -32588100 + (TCTG)n Simple_repeat Simple_repeat 1 223 0 1 1500 379 312 63 7 chr5 119949159 119949301 -32587958 - HAL1-3A_ME LINE L1 -740 2118 1969 1 1500 542 286 103 5 chr5 119949999 119950207 -32587052 + B4A SINE B4 8 243 -49 1 1500 216 0 0 0 chr5 119950259 119950283 -32586976 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1500 1083 192 57 33 chr5 119950594 119950804 -32586455 + B3 SINE B2 1 215 -1 1 1500 487 277 6 0 chr5 119950831 119950937 -32586322 + PB1D10 SINE Alu 1 112 -37 1 1500 221 333 55 11 chr5 119950983 119951074 -32586185 + BC1_Mm scRNA scRNA 5 99 -53 1 1500 290 132 19 0 chr5 119951074 119951127 -32586132 + G-rich Low_complexity Low_complexity 3 56 0 1 1500 556 313 161 0 chr5 119951180 119951397 -32585862 - MIR SINE MIR 0 262 11 1 1500 207 139 0 0 chr5 119951526 119951562 -32585697 + (GAAAA)n Simple_repeat Simple_repeat 3 38 0 1 1500 1087 109 0 11 chr5 119952458 119952634 -32584625 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 1 1500 240 86 0 0 chr5 119953013 119953048 -32584211 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 1 1500 431 211 189 0 chr5 119953193 119953288 -32583971 + B1F SINE Alu 26 138 -11 1 1500 325 295 84 15 chr5 119953352 119953483 -32583776 + MIR SINE MIR 84 223 -39 1 1500 358 264 116 91 chr5 119953613 119953734 -32583525 + ID_B1 SINE B4 83 206 -18 1 1500 757 227 64 6 chr5 119953747 119953920 -32583339 + B3A SINE B2 1 183 -15 1 1500 407 125 0 0 chr5 119953920 119953976 -32583283 - Lx2 LINE L1 -167 6830 6775 1 1500 2427 77 0 0 chr5 119953974 119954299 -32582960 - Lx2 LINE L1 -352 6645 6321 1 1500 546 255 49 56 chr5 119954547 119954709 -32582550 + RSINE1 SINE B4 3 163 -2 1 1500 495 0 0 0 chr5 119954712 119954767 -32582492 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 1 1500 447 226 108 79 chr5 119956247 119956386 -32580873 + B1_Mur2 SINE Alu 2 144 -5 1 1500 563 92 0 11 chr5 119956387 119956475 -32580784 + (GAGAA)n Simple_repeat Simple_repeat 5 91 0 1 1500 476 296 34 7 chr5 119956523 119956669 -32580590 + Lx8 LINE L1 6979 7128 -345 1 1500 222 245 45 117 chr5 119956962 119957073 -32580186 + L2c LINE L2 3279 3381 -6 1 1500 218 290 14 0 chr5 119958338 119958407 -32578852 + CT-rich Low_complexity Low_complexity 1 70 0 1 1500 1126 235 66 78 chr5 119958751 119958938 -32578321 - MTE2a LTR MaLR 0 379 194 1 1500 459 0 0 0 chr5 119958938 119958989 -32578270 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1500 1126 269 74 68 chr5 119958989 119959193 -32578066 - MTE2a LTR MaLR -178 243 15 1 1500 551 305 0 38 chr5 119959770 119959927 -32577332 + RSINE1 SINE B4 15 165 0 1 1500 210 71 0 0 chr5 119960471 119960499 -32576760 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 1 1500 441 0 0 0 chr5 119960500 119960549 -32576710 + (TATG)n Simple_repeat Simple_repeat 4 52 0 1 1500 246 81 0 0 chr5 119960550 119960587 -32576672 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 1 1500 395 255 36 9 chr5 119960908 119961019 -32576240 + PB1D7 SINE Alu 2 115 -5 1 1500 341 264 18 83 chr5 119961330 119961495 -32575764 + MIRb SINE MIR 103 263 -5 1 1500 450 0 0 0 chr5 119961539 119961589 -32575670 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1500 1220 57 0 0 chr5 119961684 119961825 -32575434 - B1_Mm SINE Alu -6 141 1 1 1500 306 225 132 150 chr5 119962006 119962034 -32575225 + B4 SINE B4 77 215 -77 1 1500 859 164 0 0 chr5 119962034 119962168 -32575091 + B1_Mur4 SINE Alu 6 139 -11 1 1500 186 43 0 0 chr5 119962168 119962191 -32575068 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1500 306 225 132 150 chr5 119962191 119962248 -32575011 + B4 SINE B4 216 292 0 1 1500 372 133 0 0 chr5 119962251 119962311 -32574948 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1500 201 330 0 22 chr5 119962530 119962620 -32574639 + C-rich Low_complexity Low_complexity 2 89 0 1 1500 379 321 85 65 chr5 119963105 119963305 -32573954 + L1ME4a LINE L1 5683 5886 -238 1 1500 421 298 213 44 chr5 119963557 119963806 -32573453 + B4A SINE B4 2 292 0 1 1500 453 122 0 0 chr5 119963869 119963943 -32573316 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1500 211 313 0 0 chr5 119963990 119964057 -32573202 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1500 227 312 0 0 chr5 119964158 119964222 -32573037 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1500 246 156 0 0 chr5 119964761 119964806 -32572453 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1500 181 161 0 67 chr5 119964872 119964932 -32572327 + (TATG)n Simple_repeat Simple_repeat 4 59 0 1 1500 586 236 55 8 chr5 119965896 119966024 -32571235 - ID_B1 SINE B4 -10 214 81 1 1500 1421 43 37 21 chr5 119966104 119966293 -32570966 + B2_Mm2 SINE B2 1 192 -3 1 1500 738 191 13 20 chr5 119966352 119966502 -32570757 + B1_Mur1 SINE Alu 1 149 0 1 1500 248 312 111 49 chr5 119966743 119966765 -32570494 + B4 SINE B4 57 79 -213 1 1500 416 319 51 0 chr5 119966765 119966903 -32570356 + B1F2 SINE Alu 5 149 0 1 1500 549 246 96 9 chr5 119966903 119967058 -32570201 + ID_B1 SINE B4 80 246 -46 1 1500 1254 178 9 9 chr5 119967128 119967344 -32569915 + B3 SINE B2 1 216 0 1 1500 368 232 0 6 chr5 119967420 119967598 -32569661 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 1500 402 223 0 0 chr5 119967610 119967767 -32569492 + (TG)n Simple_repeat Simple_repeat 1 157 0 1 1500 737 299 33 26 chr5 119967778 119968041 -32569218 - ID_B1 SINE B4 0 292 1 1 1500 1185 222 7 19 chr5 119968799 119969070 -32568189 - MER121 Unknown Unknown -80 332 65 1 1500 486 274 105 44 chr5 119969688 119969917 -32567342 + B4A SINE B4 50 292 0 1 1500 414 302 108 0 chr5 119970693 119970822 -32566437 - B1_Mur1 SINE Alu -4 145 3 1 1500 510 220 205 7 chr5 119970903 119971054 -32566205 + B3A SINE B2 1 181 -17 1 1500 360 301 0 0 chr5 119971057 119971223 -32566036 + (CA)n Simple_repeat Simple_repeat 1 166 0 1 1500 367 212 38 0 chr5 119971390 119971470 -32565789 + PB1D10 SINE Alu 18 100 -17 1 1500 280 352 165 38 chr5 119972200 119972567 -32564692 - L2b LINE L2 0 3375 2964 1 1500 277 212 22 45 chr5 119972977 119973066 -32564193 + GA-rich Low_complexity Low_complexity 3 89 0 1 1500 332 245 97 97 chr5 119973069 119973223 -32564036 + HAL1-3A_ME LINE L1 2284 2437 -421 1 1500 314 282 153 44 chr5 119973216 119973353 -32563906 + HAL1-3A_ME LINE L1 2285 2436 -422 1 1500 502 86 48 24 chr5 119973379 119973462 -32563797 - B1_Mur3 SINE Alu -25 124 40 1 1500 608 221 0 7 chr5 119973478 119973890 -32563369 + CT-rich Low_complexity Low_complexity 1 408 0 1 1500 415 73 0 0 chr5 119973900 119973955 -32563304 - B1_Mur4 SINE Alu -95 55 1 1 1500 229 303 0 29 chr5 119974817 119974885 -32562374 - MER46C DNA MER2_type -10 328 263 1 1500 21 0 0 0 chr5 119975075 119975096 -32562163 + AT_rich Low_complexity Low_complexity 1 21 0 1 1500 204 130 0 61 chr5 119975141 119975190 -32562069 + A-rich Low_complexity Low_complexity 3 48 0 1 1500 337 256 0 0 chr5 119975600 119975682 -32561577 - ID4_ SINE ID 0 83 2 1 1500 209 209 23 0 chr5 119976085 119976128 -32561131 + GA-rich Low_complexity Low_complexity 3 46 0 1 1500 432 97 0 0 chr5 119976517 119976579 -32560680 + (TG)n Simple_repeat Simple_repeat 2 63 0 1 1500 326 205 12 0 chr5 119976581 119976664 -32560595 + (TA)n Simple_repeat Simple_repeat 2 85 0 1 1500 349 263 53 0 chr5 119976667 119976762 -32560497 + PB1D10 SINE Alu 18 117 0 1 1500 664 260 110 6 chr5 119977048 119977230 -32560029 + ID_B1 SINE B4 1 201 -23 1 1500 405 0 0 0 chr5 119977236 119977281 -32559978 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1 1500 281 143 0 0 chr5 119977300 119977349 -32559910 + B3 SINE B2 165 213 -3 1 1500 1005 235 151 20 chr5 119977355 119977659 -32559600 - MTEa LTR MaLR -31 348 5 1 1500 570 176 109 34 chr5 119978683 119978830 -32558429 + RMER21B LTR ERV1 307 464 -378 1 1500 559 291 79 130 chr5 119979524 119979801 -32557458 + B4 SINE B4 30 292 0 1 1500 957 296 4 20 chr5 119980725 119980973 -32556286 + B4A SINE B4 44 287 -5 1 1500 520 273 121 0 chr5 119981487 119981619 -32555640 + RSINE1 SINE B4 18 165 0 1 1500 400 267 143 0 chr5 119981646 119981807 -32555452 - Tigger5 DNA MER2_type -35 2371 2188 1 1500 384 253 0 0 chr5 119981867 119981946 -32555313 - ID4_ SINE ID -4 79 1 1 1500 380 250 9 74 chr5 119981951 119982059 -32555200 - PB1D10 SINE Alu -8 109 9 1 1500 261 274 9 104 chr5 119981968 119982074 -32555185 - ID_B1 SINE B4 -51 173 78 1 1500 453 294 84 73 chr5 119982076 119982267 -32554992 - Tigger5 DNA MER2_type -2196 210 18 1 1500 198 0 0 0 chr5 119982960 119982982 -32554277 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 1 1500 371 289 0 20 chr5 119982983 119983082 -32554177 - MLT1K LTR MaLR -326 269 173 1 1500 591 202 0 0 chr5 119983086 119983210 -32554049 + CT-rich Low_complexity Low_complexity 2 125 0 1 1500 456 51 0 0 chr5 119983210 119983269 -32553990 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1500 330 132 0 0 chr5 119983466 119983519 -32553740 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 1 1500 591 15 0 0 chr5 119983597 119983665 -32553594 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1500 204 237 0 0 chr5 119984033 119984071 -32553188 + T-rich Low_complexity Low_complexity 2 39 0 1 1500 359 21 21 0 chr5 119984367 119984415 -32552844 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1500 553 302 116 29 chr5 119984423 119984665 -32552594 - B4A SINE B4 -16 276 14 1 1500 1638 21 5 0 chr5 119984659 119984851 -32552408 + MTA_Mm LTR MaLR 204 396 0 1 1500 549 301 80 57 chr5 119985165 119985479 -32551780 + ORR1E LTR MaLR 38 358 -1 1 1500 284 297 0 0 chr5 119986119 119986210 -32551049 + L1M2 LINE L1 5554 5644 -647 1 1500 488 313 22 67 chr5 119986226 119986468 -32550791 + MTD LTR MaLR 6 222 -197 1 1500 645 238 215 0 chr5 119986548 119986720 -32550539 - ID_B1 SINE B4 -7 217 9 1 1500 285 306 57 75 chr5 119987069 119987334 -32549925 + RMER12 LTR ERVK 733 992 -330 1 1500 533 231 6 0 chr5 119987334 119987507 -32549752 + (TG)n Simple_repeat Simple_repeat 1 174 0 1 1500 388 211 42 0 chr5 119987507 119987578 -32549681 - ID4_ SINE ID -6 77 4 1 1500 925 326 108 11 chr5 119987578 119988040 -32549219 - MT2A LTR ERVL 0 533 27 1 1500 306 352 95 0 chr5 119987948 119988053 -32549206 - MTEa LTR MaLR -259 120 6 1 1500 385 323 0 0 chr5 119988112 119988208 -32549051 - RSINE1 SINE B4 -2 163 68 1 1500 267 284 76 29 chr5 119988360 119988465 -32548794 - MIR SINE MIR -77 131 22 1 1500 999 117 33 3 chr5 119989019 119989320 -32547939 + (TAGA)n Simple_repeat Simple_repeat 1 309 0 1 1500 787 99 35 11 chr5 119989339 119989513 -32547746 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 1 1500 386 297 88 31 chr5 119990177 119990337 -32546922 + MLT1B LTR MaLR 16 184 -206 1 1500 661 346 30 22 chr5 119990401 119990803 -32546456 + L1ME1 LINE L1 5650 6054 -125 1 1500 189 0 0 0 chr5 119990873 119990894 -32546365 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1500 266 246 33 0 chr5 119991080 119991141 -32546118 + B1F2 SINE Alu 1 63 -86 1 1500 940 208 11 6 chr5 119991162 119991244 -32546015 + ID SINE ID 1 83 -141 1 1500 381 294 56 42 chr5 119991244 119991386 -32545873 + B1F SINE Alu 3 146 -3 1 1500 697 237 0 0 chr5 119991387 119991526 -32545733 + B1_Mur1 SINE Alu 2 140 -9 1 1500 234 62 0 0 chr5 119991527 119991559 -32545700 + (GA)n Simple_repeat Simple_repeat 2 33 0 1 1500 1891 269 53 50 chr5 119991730 119992423 -32544836 + Lx8 LINE L1 6318 7012 -461 1 1500 458 272 26 9 chr5 119992508 119992623 -32544636 - RSINE1 SINE B4 -29 136 20 1 1500 2082 124 3 41 chr5 119993822 119994208 -32543051 + ORR1A2 LTR MaLR 1 346 0 1 1500 369 0 0 0 chr5 119995155 119995196 -32542063 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 1500 363 250 37 73 chr5 119995198 119995362 -32541897 - RSINE1 SINE B4 -3 162 5 1 1500 27 49 0 0 chr5 119995362 119995403 -32541856 + AT_rich Low_complexity Low_complexity 1 41 0 1 1500 334 251 103 37 chr5 119995458 119995581 -32541678 - PB1D10 SINE Alu -11 138 9 1 1500 397 284 82 69 chr5 119995506 119995665 -32541594 - ID_B1 SINE B4 -63 161 1 1 1500 453 116 0 0 chr5 119995779 119995848 -32541411 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1500 316 320 0 0 chr5 119995848 119995923 -32541336 - ID4_ SINE ID -7 76 2 1 1500 549 221 24 24 chr5 119995930 119996055 -32541204 - B1F SINE Alu -3 146 22 1 1500 431 315 0 40 chr5 119995932 119996081 -32541178 - ID_B1 SINE B4 -4 220 78 1 1500 345 62 0 0 chr5 119996091 119996139 -32541120 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1500 336 48 0 0 chr5 119996139 119996180 -32541079 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1500 1099 82 0 45 chr5 119996324 119996478 -32540781 + B1_Mus1 SINE Alu 2 148 0 1 1500 223 375 75 38 chr5 119996507 119996640 -32540619 + MIRb SINE MIR 36 173 -95 1 1500 578 273 30 70 chr5 119997637 119997838 -32539421 - ID_B1 SINE B4 0 224 32 1 1500 347 227 98 49 chr5 119997782 119997884 -32539375 - B1F SINE Alu -22 127 21 1 1500 417 211 31 21 chr5 119998477 119998574 -32538685 + PB1 SINE Alu 17 114 -13 1 1500 202 241 0 33 chr5 119998574 119998634 -32538625 + GA-rich Low_complexity Low_complexity 3 60 0 1 1500 198 235 73 0 chr5 119998912 119998980 -32538279 - MIRc SINE MIR -119 149 77 1 1500 646 240 116 30 chr5 119999519 119999717 -32537542 + B3 SINE B2 2 216 0 1 1500 204 237 0 0 chr5 119999746 119999784 -32537475 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 1 1500 288 53 0 0 chr5 119999791 119999829 -32537430 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1500 726 209 7 13 chr5 120000051 120000201 -32537058 + B1_Mur3 SINE Alu 1 149 0 1 1500 423 98 0 0 chr5 120000216 120000277 -32536982 + (CATA)n Simple_repeat Simple_repeat 2 62 0 2 1500 369 0 0 0 chr5 120000278 120000319 -32536940 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1500 483 327 45 7 chr5 120000340 120000494 -32536765 - MER2 DNA MER2_type -4 341 182 4 1500 401 218 49 10 chr5 120000618 120000720 -32536539 + PB1D10 SINE Alu 11 116 -1 5 1500 742 188 0 8 chr5 120000722 120000851 -32536408 + RSINE1 SINE B4 12 139 -26 6 1500 4283 138 92 87 chr5 120001688 120002554 -32534705 - RMER19B LTR ERVK -12 890 20 7 1500 480 260 201 36 chr5 120002560 120002754 -32534505 + B4 SINE B4 15 240 -52 8 1500 861 160 20 40 chr5 120002919 120003069 -32534190 - B1_Mur1 SINE Alu 0 149 3 9 1500 308 254 0 0 chr5 120003203 120003262 -32533997 + RSINE1 SINE B4 97 155 -10 1 1500 411 106 71 0 chr5 120003262 120003347 -32533912 + GA-rich Low_complexity Low_complexity 3 93 0 1 1500 377 180 23 83 chr5 120004302 120004407 -32532852 + PB1D7 SINE Alu 4 96 -24 1 1500 1108 23 34 22 chr5 120004407 120004585 -32532674 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1500 303 226 26 128 chr5 120004585 120004606 -32532653 + PB1D9 SINE Alu 97 115 -5 1 1500 250 115 0 37 chr5 120004684 120004738 -32532521 + GA-rich Low_complexity Low_complexity 2 53 0 1 1500 259 324 29 0 chr5 120004901 120005006 -32532253 + (TGGA)n Simple_repeat Simple_repeat 4 111 0 1 1500 578 227 6 0 chr5 120005017 120005180 -32532079 + (TGGA)n Simple_repeat Simple_repeat 3 166 0 1 1500 342 282 124 39 chr5 120005186 120005315 -32531944 - B1F1 SINE Alu -9 140 1 1 1500 341 241 90 83 chr5 120005847 120006004 -32531255 - ID_B1 SINE B4 -16 208 54 1 1500 230 215 91 15 chr5 120005974 120006040 -32531219 - B1F SINE Alu -38 111 41 1 1500 396 88 0 0 chr5 120006151 120006208 -32531051 + (CTTTG)n Simple_repeat Simple_repeat 1 57 0 1 1500 422 254 52 6 chr5 120006396 120006501 -32530758 + PB1D10 SINE Alu 19 149 0 2 1500 692 253 75 5 chr5 120006511 120006710 -32530549 + ID_B1 SINE B4 2 214 -10 2 1500 24 0 0 0 chr5 120006728 120006752 -32530507 + AT_rich Low_complexity Low_complexity 1 24 0 2 1500 185 45 0 0 chr5 120007280 120007302 -32529957 - L2b LINE L2 -25 3350 3329 2 1500 225 0 0 0 chr5 120007354 120007379 -32529880 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1500 870 256 23 0 chr5 120007596 120007772 -32529487 + B3A SINE B2 2 181 -17 2 1500 731 173 6 0 chr5 120007774 120007947 -32529312 + (CA)n Simple_repeat Simple_repeat 2 175 0 2 1500 230 289 0 0 chr5 120007984 120008036 -32529223 + MTEb LTR MaLR 1 52 -327 2 1500 1264 88 37 32 chr5 120008036 120008225 -32529034 + B2_Mm2 SINE B2 2 191 -4 2 1500 670 205 5 0 chr5 120008568 120008963 -32528296 + (TG)n Simple_repeat Simple_repeat 1 397 0 2 1500 709 173 0 16 chr5 120008979 120009161 -32528098 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1500 446 252 41 88 chr5 120009180 120009350 -32527909 - RSINE1 SINE B4 -1 164 3 3 1500 452 245 10 10 chr5 120010175 120010274 -32526985 + PB1D10 SINE Alu 2 100 -17 3 1500 222 150 0 0 chr5 120010296 120010336 -32526923 + (CAA)n Simple_repeat Simple_repeat 3 42 0 3 1500 226 224 677 0 chr5 120010351 120010450 -32526809 + B4A SINE B4 7 172 -120 3 1500 809 237 11 22 chr5 120010478 120010659 -32526600 + B3A SINE B2 4 182 -16 3 1500 695 120 28 20 chr5 120011016 120011265 -32525994 + (TG)n Simple_repeat Simple_repeat 1 251 0 3 1500 236 30 30 0 chr5 120011334 120011367 -32525892 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1500 639 247 221 7 chr5 120011371 120011653 -32525606 - MTE2b LTR MaLR -13 366 25 3 1500 196 310 68 42 chr5 120011691 120011809 -32525450 + MIR SINE MIR 50 170 -92 3 1500 183 204 0 0 chr5 120011870 120011914 -32525345 + (CATG)n Simple_repeat Simple_repeat 1 44 0 3 1500 958 162 17 20 chr5 120012240 120012586 -32524673 + GA-rich Low_complexity Low_complexity 1 344 0 4 1500 302 338 99 0 chr5 120012588 120012730 -32524529 + HAL1-3A_ME LINE L1 2284 2439 -419 4 1500 361 292 8 24 chr5 120012730 120012853 -32524406 + GA-rich Low_complexity Low_complexity 1 121 0 4 1500 897 66 7 21 chr5 120012853 120012993 -32524266 + (GAA)n Simple_repeat Simple_repeat 1 138 0 4 1500 622 213 21 49 chr5 120013033 120013176 -32524083 + B1F2 SINE Alu 2 140 -9 4 1500 290 326 25 93 chr5 120013042 120013193 -32524066 + B4A SINE B4 96 235 -57 4 1500 533 181 0 41 chr5 120013193 120013291 -32523968 + RSINE1 SINE B4 4 97 -68 4 1500 330 301 0 0 chr5 120013397 120013470 -32523789 - tRNA-Ala-GCY_ tRNA tRNA 0 75 3 4 1500 756 236 157 0 chr5 120014413 120014604 -32522655 - ID_B1 SINE B4 -2 222 2 4 1500 250 270 14 0 chr5 120014693 120014771 -32522488 + L1MB7 LINE L1 5587 5665 -514 4 1500 805 278 16 16 chr5 120014870 120015060 -32522199 + B4A SINE B4 39 228 -64 5 1500 240 188 116 70 chr5 120015099 120015125 -32522134 + B4A SINE B4 190 217 -75 5 1500 396 0 0 0 chr5 120015125 120015169 -32522090 + (TC)n Simple_repeat Simple_repeat 1 44 0 5 1500 351 0 0 0 chr5 120015169 120015208 -32522051 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1500 240 188 116 70 chr5 120015208 120015266 -32521993 + B4A SINE B4 218 278 -14 5 1500 336 24 0 0 chr5 120015273 120015314 -32521945 + (CA)n Simple_repeat Simple_repeat 2 42 0 5 1500 257 340 0 31 chr5 120015349 120015478 -32521781 + GA-rich Low_complexity Low_complexity 1 125 0 5 1500 273 297 159 50 chr5 120015493 120015794 -32521465 + L1MB7 LINE L1 5675 6008 -176 4 1500 273 298 128 8 chr5 120015961 120016086 -32521173 + B1F SINE Alu 2 141 -9 5 1500 263 306 14 0 chr5 120016098 120016170 -32521089 + ID4 SINE ID 3 75 -8 5 1500 559 191 19 0 chr5 120016312 120016417 -32520842 - PB1D10 SINE Alu -2 115 9 5 1500 557 183 200 0 chr5 120016725 120016840 -32520419 + B1_Mm SINE Alu 2 139 -8 5 1500 773 181 0 8 chr5 120016843 120017092 -32520167 + (TG)n Simple_repeat Simple_repeat 1 246 0 6 1500 409 270 101 7 chr5 120017102 120017240 -32520019 + RSINE1 SINE B4 8 158 -7 6 1500 230 347 0 0 chr5 120017484 120017556 -32519703 + MER113A DNA MER1_type 181 252 -62 6 1500 423 0 0 0 chr5 120018128 120018175 -32519084 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 6 1500 236 364 74 9 chr5 120018297 120018452 -32518807 + MIRc SINE MIR 14 171 -91 6 1500 329 231 13 0 chr5 120018539 120018617 -32518642 - B3 SINE B2 -2 214 136 6 1500 222 364 0 0 chr5 120018602 120018679 -32518580 - PB1D10 SINE Alu -39 78 2 6 1500 537 265 46 51 chr5 120018819 120019014 -32518245 - B3A SINE B2 0 198 5 6 1500 368 205 0 49 chr5 120019127 120019209 -32518050 + PB1D10 SINE Alu 35 112 -5 6 1500 504 311 52 15 chr5 120019212 120019346 -32517913 + RSINE1 SINE B4 24 162 -3 6 1500 988 139 0 16 chr5 120019507 120019599 -32517660 + polypurine Low_complexity Low_complexity 1 90 0 7 1500 1179 117 0 0 chr5 120019599 120019779 -32517480 + (GGA)n Simple_repeat Simple_repeat 1 180 0 7 1500 988 139 0 16 chr5 120019779 120019869 -32517390 + polypurine Low_complexity Low_complexity 91 180 0 7 1500 204 125 0 0 chr5 120019870 120019902 -32517357 + (GGA)n Simple_repeat Simple_repeat 2 33 0 7 1500 413 97 14 0 chr5 120020059 120020131 -32517128 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1500 285 29 0 0 chr5 120020747 120020781 -32516478 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1500 499 247 19 13 chr5 120020786 120020908 -32516351 + PB1D10 SINE Alu 1 117 0 7 1500 347 274 58 52 chr5 120021229 120021383 -32515876 - HAL1-3A_ME LINE L1 -420 2438 2284 7 1500 239 182 36 18 chr5 120021385 120021441 -32515818 + CT-rich Low_complexity Low_complexity 2 58 0 7 1500 1087 200 55 10 chr5 120021735 120021937 -32515322 + B3 SINE B2 1 211 -5 7 1500 235 262 70 23 chr5 120021980 120022066 -32515193 - LTR58 LTR ERV1 -565 114 25 8 1500 288 167 25 89 chr5 120022445 120022459 -32514800 - PB1D9 SINE Alu -1 119 110 8 1500 243 0 0 0 chr5 120022459 120022486 -32514773 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 8 1500 288 167 25 89 chr5 120022486 120022550 -32514709 - PB1D9 SINE Alu -11 109 46 8 1500 238 213 111 32 chr5 120022511 120022574 -32514685 - MT2B LTR ERVL -360 241 174 8 1500 277 241 103 69 chr5 120022912 120023028 -32514231 - MLT1D LTR MaLR -359 146 27 8 1500 225 108 0 0 chr5 120023057 120023094 -32514165 + (TCTG)n Simple_repeat Simple_repeat 1 37 0 8 1500 566 288 0 14 chr5 120023485 120023633 -32513626 + ID_B1 SINE B4 71 216 -8 8 1500 211 339 8 34 chr5 120023726 120023786 -32513473 + polypurine Low_complexity Low_complexity 3 63 0 8 1500 269 230 25 63 chr5 120023786 120023865 -32513394 + ID4_ SINE ID 5 80 -3 8 1500 211 339 8 34 chr5 120023865 120023923 -32513336 + polypurine Low_complexity Low_complexity 64 118 0 8 1500 865 201 81 52 chr5 120024001 120024211 -32513048 + B3 SINE B2 1 216 0 9 1500 394 260 139 47 chr5 120024339 120024468 -32512791 - RSINE1 SINE B4 -17 148 8 9 1500 564 116 0 0 chr5 120024642 120024728 -32512531 + (TGG)n Simple_repeat Simple_repeat 1 86 0 9 1500 378 0 0 0 chr5 120025398 120025440 -32511819 + (GA)n Simple_repeat Simple_repeat 1 42 0 9 1500 382 191 168 19 chr5 120025612 120025719 -32511540 + RSINE1 SINE B4 7 129 -36 9 1500 204 40 0 0 chr5 120025720 120025745 -32511514 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 9 1500 485 135 345 12 chr5 120025873 120026038 -32511221 - B4 SINE B4 -71 221 2 9 1500 860 179 7 0 chr5 120026104 120026249 -32511010 + B1_Mur4 SINE Alu 5 150 0 9 1500 180 0 0 0 chr5 120026249 120026269 -32510990 + (CAAAAA)n Simple_repeat Simple_repeat 1 20 0 9 1500 339 221 73 10 chr5 120026321 120026417 -32510842 - PB1D10 SINE Alu -15 102 1 9 1500 441 281 0 0 chr5 120026549 120026932 -32510327 + (CA)n Simple_repeat Simple_repeat 1 383 0 1 1500 243 163 0 0 chr5 120027270 120027313 -32509946 + ID_B1 SINE B4 108 150 -74 1 1500 218 225 136 12 chr5 120027313 120027351 -32509908 + PB1D10 SINE Alu 27 117 0 1 1500 638 223 61 27 chr5 120027359 120027509 -32509750 + B3 SINE B2 1 158 -35 1 1500 219 88 0 0 chr5 120027509 120027543 -32509716 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1500 491 250 95 39 chr5 120027543 120027571 -32509688 + B2_Mm1t SINE B2 159 188 -5 1 1500 734 197 76 0 chr5 120027580 120027712 -32509547 + B1_Mur2 SINE Alu 1 142 -7 1 1500 747 83 41 18 chr5 120027762 120027933 -32509326 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 1 1500 694 83 52 29 chr5 120027987 120028161 -32509098 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1 1500 504 76 53 40 chr5 120028174 120028325 -32508934 + (TAGA)n Simple_repeat Simple_repeat 3 155 0 1 1500 1312 97 11 0 chr5 120028449 120028625 -32508634 + B2_Mm1t SINE B2 2 179 -14 1 1500 418 71 284 118 chr5 120028672 120028771 -32508488 + B2_Mm2 SINE B2 47 173 -22 1 1500 1259 86 17 0 chr5 120028771 120028946 -32508313 - B2_Mm1t SINE B2 -14 179 2 1 1500 418 71 284 118 chr5 120028946 120028973 -32508286 + B2_Mm2 SINE B2 174 194 -1 1 1500 722 282 71 10 chr5 120028985 120029182 -32508077 + ID_B1 SINE B4 1 209 -15 1 1500 186 43 0 0 chr5 120029191 120029214 -32508045 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 1500 620 197 49 0 chr5 120029503 120029625 -32507634 + B1F SINE Alu 5 132 -17 1 1500 447 19 0 0 chr5 120029628 120029680 -32507579 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 1 1500 322 208 0 49 chr5 120029680 120029761 -32507498 + ID_B1 SINE B4 122 198 -26 1 1500 259 233 30 91 chr5 120029689 120029788 -32507471 + B1F SINE Alu 50 142 -7 1 1500 289 299 62 0 chr5 120030300 120030397 -32506862 + BC1_Mm scRNA scRNA 2 104 -48 1 1500 461 331 75 33 chr5 120030538 120030897 -32506362 + L1ME2z LINE L1 6016 6389 -55 1 1500 241 316 86 70 chr5 120030902 120030948 -32506311 - B2_Mm2 SINE B2 -4 191 2 1 1500 758 236 0 7 chr5 120030948 120031089 -32506170 - RSINE1 SINE B4 -23 142 3 1 1500 350 21 21 0 chr5 120031234 120031281 -32505978 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1500 318 98 0 0 chr5 120031462 120031472 -32505787 + (T)n Simple_repeat Simple_repeat 1 10 0 1 1500 1078 111 28 0 chr5 120031472 120031616 -32505643 - B1_Mus1 SINE Alu 0 148 1 1 1500 318 98 0 0 chr5 120031616 120031640 -32505619 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1500 1211 48 14 0 chr5 120031640 120031785 -32505474 - B1_Mm SINE Alu 0 147 1 1 1500 318 98 0 0 chr5 120031785 120031800 -32505459 + (T)n Simple_repeat Simple_repeat 1 15 0 1 1500 841 222 42 33 chr5 120031816 120032030 -32505229 - B3 SINE B2 0 216 1 1 1500 353 157 0 0 chr5 120032113 120032177 -32505082 + B1_Mur2 SINE Alu 57 149 0 1 1500 426 226 0 23 chr5 120032333 120032419 -32504840 - PB1D7 SINE Alu 0 120 37 1 1500 344 253 8 222 chr5 120032445 120032576 -32504683 - B1F SINE Alu -2 147 24 1 1500 29 0 0 0 chr5 120032999 120033028 -32504231 + AT_rich Low_complexity Low_complexity 1 29 0 1 1500 525 140 36 18 chr5 120033042 120033209 -32504050 + (TG)n Simple_repeat Simple_repeat 2 171 0 1 1500 345 194 22 28 chr5 120033239 120033419 -32503840 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1500 370 180 42 15 chr5 120033430 120033690 -32503569 + (TG)n Simple_repeat Simple_repeat 1 266 0 1 1500 214 328 14 135 chr5 120033762 120033910 -32503349 - RSINE1 SINE B4 0 165 36 1 1500 457 258 66 29 chr5 120033923 120034059 -32503200 - B1F SINE Alu -3 146 6 1 1500 818 247 62 16 chr5 120033945 120034138 -32503121 - ID_B1 SINE B4 -22 202 1 1 1500 407 174 0 11 chr5 120034157 120034232 -32503027 + CT-rich Low_complexity Low_complexity 13 87 0 1 1500 1206 58 133 6 chr5 120034232 120034405 -32502854 - B2_Mm2 SINE B2 0 195 1 1 1500 407 174 0 11 chr5 120034405 120034416 -32502843 + polypyrimidine Low_complexity Low_complexity 2 12 0 1 1500 262 146 21 0 chr5 120034431 120034479 -32502780 - ID_B1 SINE B4 -55 169 121 1 1500 204 97 0 0 chr5 120034716 120034747 -32502512 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1500 358 238 48 29 chr5 120034887 120034991 -32502268 - PB1D10 SINE Alu -7 110 5 1 1500 215 152 43 21 chr5 120035326 120035373 -32501886 - B4 SINE B4 -243 49 2 1 1500 258 336 45 63 chr5 120035371 120035385 -32501874 - B4A SINE B4 -98 194 86 1 1500 441 278 0 0 chr5 120035385 120035482 -32501777 - PB1 SINE Alu -30 97 1 1 1500 1597 47 5 0 chr5 120035513 120035704 -32501555 + B2_Mm1t SINE B2 2 193 0 1 1500 279 0 0 0 chr5 120036272 120036303 -32500956 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1 1500 470 260 0 0 chr5 120036586 120036682 -32500577 + PB1D10 SINE Alu 4 99 -18 1 1500 434 181 0 21 chr5 120036708 120036804 -32500455 + G-rich Low_complexity Low_complexity 4 97 0 1 1500 308 275 0 12 chr5 120036806 120036880 -32500379 + PB1D10 SINE Alu 5 77 -40 1 1500 481 149 11 34 chr5 120036880 120037001 -32500258 + B1_Mur3 SINE Alu 2 110 -10 1 1500 724 139 0 28 chr5 120037785 120037926 -32499333 + T-rich Low_complexity Low_complexity 5 141 0 1 1500 320 228 0 179 chr5 120037956 120038079 -32499180 - PB1D9 SINE Alu 0 120 20 1 1500 187 257 66 26 chr5 120038480 120038556 -32498703 + MIR SINE MIR 93 171 -91 1 1500 224 250 18 18 chr5 120038659 120038716 -32498543 + CT-rich Low_complexity Low_complexity 1 57 0 1 1500 633 116 8 82 chr5 120039502 120039624 -32497635 + B1_Mur3 SINE Alu 37 149 0 1 1500 565 267 23 8 chr5 120039833 120039965 -32497294 + ID_B1 SINE B4 81 214 -10 1 1500 572 276 63 26 chr5 120040285 120040553 -32496706 - RMER17C LTR ERVK -22 388 111 1 1500 414 0 0 0 chr5 120040597 120040643 -32496616 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 1500 235 184 20 0 chr5 120040650 120040699 -32496560 - RLTR25A LTR ERVK -532 571 522 1 1500 640 89 11 0 chr5 120040655 120040745 -32496514 - B1_Mus1 SINE Alu -57 91 1 1 1500 423 171 11 109 chr5 120040746 120040838 -32496421 - RMER17C LTR ERVK -327 83 1 1 1500 892 119 7 69 chr5 120040941 120041085 -32496174 + B1_Mus1 SINE Alu 2 136 -12 1 1500 1058 0 8 0 chr5 120041091 120041213 -32496046 + (GAA)n Simple_repeat Simple_repeat 2 124 0 1 1500 421 283 64 21 chr5 120041275 120041416 -32495843 - RSINE1 SINE B4 -17 148 2 1 1500 415 300 72 48 chr5 120041429 120041571 -32495688 - ID_B1 SINE B4 -63 229 85 1 1500 543 218 109 0 chr5 120041853 120041963 -32495296 - B1_Mur1 SINE Alu -6 143 22 1 1500 279 268 26 35 chr5 120042021 120042137 -32495122 - L1M4 LINE L1 -789 5357 5243 1 1500 266 325 95 48 chr5 120042153 120042194 -32495065 + B4A SINE B4 67 160 -132 1 1500 507 177 94 34 chr5 120042194 120042311 -32494948 + B1_Mus2 SINE Alu 24 147 0 1 1500 266 325 95 48 chr5 120042311 120042363 -32494896 + B4A SINE B4 161 286 -6 1 1500 410 202 36 100 chr5 120042359 120042469 -32494790 + ID_B1 SINE B4 53 155 -69 1 1500 314 238 11 91 chr5 120042394 120042482 -32494777 + B1F2 SINE Alu 9 89 -60 1 1500 211 376 0 45 chr5 120042466 120042555 -32494704 + PB1D7 SINE Alu 11 95 -25 1 1500 231 314 96 85 chr5 120042469 120042546 -32494713 + MT2B2 LTR ERVL 53 241 -343 1 1500 31 0 0 0 chr5 120042557 120042588 -32494671 + AT_rich Low_complexity Low_complexity 1 31 0 1 1500 202 106 21 21 chr5 120042740 120042788 -32494471 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 1 1500 1182 61 0 13 chr5 120042791 120042941 -32494318 - B1_Mus1 SINE Alu 0 148 1 1 1500 224 278 0 0 chr5 120043510 120043564 -32493695 - RSINE1 SINE B4 -109 56 3 1 1500 273 298 43 9 chr5 120043564 120043677 -32493582 - MLT1C LTR MaLR -290 177 61 1 1500 325 268 30 20 chr5 120043713 120043812 -32493447 + MIR SINE MIR 32 131 -77 1 1500 1149 102 97 0 chr5 120043823 120043999 -32493260 - B2_Mm2 SINE B2 -2 193 1 1 1500 558 133 0 0 chr5 120044043 120044133 -32493126 + (TC)n Simple_repeat Simple_repeat 1 90 0 1 1500 455 224 17 60 chr5 120044133 120044251 -32493008 - PB1D10 SINE Alu -21 127 18 1 1500 491 231 163 49 chr5 120044166 120044289 -32492970 - ID_B1 SINE B4 -47 177 41 1 1500 441 294 58 8 chr5 120044313 120044433 -32492826 - ID_B1 SINE B4 -19 205 80 1 1500 182 300 20 0 chr5 120044462 120044512 -32492747 + L2c LINE L2 2813 2863 -556 1 1500 204 342 68 0 chr5 120044597 120044670 -32492589 + L2c LINE L2 3081 3158 -229 1 1500 1217 34 7 7 chr5 120044787 120044934 -32492325 + B1_Mm SINE Alu 1 147 0 1 1500 322 318 28 79 chr5 120045490 120045689 -32491570 - ID_B1 SINE B4 0 224 42 1 1500 483 265 0 0 chr5 120045835 120045937 -32491322 - B1F1 SINE Alu 0 149 48 1 1500 628 182 156 16 chr5 120045964 120046092 -32491167 - B1_Mur2 SINE Alu 0 149 4 1 1500 495 0 0 0 chr5 120046096 120046151 -32491108 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1 1500 237 211 103 17 chr5 120046165 120046223 -32491036 - PB1 SINE Alu -11 116 54 1 1500 299 279 11 65 chr5 120046466 120046558 -32490701 + B4A SINE B4 81 167 -125 1 1500 485 221 96 0 chr5 120046481 120046585 -32490674 + PB1D7 SINE Alu 6 119 -1 1 1500 21 0 0 0 chr5 120047358 120047379 -32489880 + GC_rich Low_complexity Low_complexity 1 21 0 1 1500 598 257 0 33 chr5 120047552 120047705 -32489554 - RSINE1 SINE B4 -16 149 2 1 1500 240 35 0 0 chr5 120048851 120048880 -32488379 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1500 509 161 115 92 chr5 120049255 120049385 -32487874 - B1F SINE Alu -15 134 2 1 1500 234 276 147 39 chr5 120049763 120049865 -32487394 + ID_B1 SINE B4 111 223 -1 1 1500 503 118 12 0 chr5 120050012 120050097 -32487162 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1500 210 143 0 0 chr5 120050127 120050162 -32487097 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 1 1500 474 263 53 0 chr5 120050205 120050319 -32486940 + PB1D7 SINE Alu 1 120 0 1 1500 204 139 28 0 chr5 120050319 120050355 -32486904 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 2 1500 820 183 0 8 chr5 120050363 120050495 -32486764 + B1_Mus2 SINE Alu 2 132 -15 2 1500 568 236 25 5 chr5 120050662 120050799 -32486460 + B1F SINE Alu 13 147 -2 2 1500 806 201 69 87 chr5 120050908 120051126 -32486133 - ID_B1 SINE B4 -9 215 2 2 1500 679 170 34 94 chr5 120051199 120051348 -32485911 + B1_Mur4 SINE Alu 5 144 -6 2 1500 531 202 42 0 chr5 120051430 120051549 -32485710 - ID_B1 SINE B4 -3 221 98 2 1500 677 256 0 24 chr5 120051722 120051890 -32485369 - RSINE1 SINE B4 0 165 2 2 1500 404 169 14 0 chr5 120052525 120052596 -32484663 + ID_B1 SINE B4 122 193 -31 2 1500 331 263 25 17 chr5 120052597 120052717 -32484542 + GA-rich Low_complexity Low_complexity 5 125 0 2 1500 227 314 77 98 chr5 120053121 120053145 -32484114 + MT2B2 LTR ERVL 97 172 -412 2 1500 527 239 49 0 chr5 120053145 120053282 -32483977 + B1F SINE Alu 1 143 -6 2 1500 393 188 0 0 chr5 120053286 120053355 -32483904 + B1_Mur3 SINE Alu 1 69 -80 2 1500 563 263 30 8 chr5 120053359 120053493 -32483766 + ID_B1 SINE B4 82 218 -6 2 1500 691 152 189 114 chr5 120053598 120053643 -32483616 + B3 SINE B2 1 36 -180 2 1500 1356 67 39 0 chr5 120053643 120053821 -32483438 + B2_Mm1t SINE B2 2 186 -7 2 1500 691 152 189 114 chr5 120053821 120053976 -32483283 + B3 SINE B2 37 216 0 2 1500 1024 39 0 0 chr5 120054077 120054205 -32483054 - B1_Mus1 SINE Alu -20 128 1 2 1500 488 305 80 62 chr5 120054205 120054419 -32482840 - B4A SINE B4 -74 218 1 2 1500 415 283 34 34 chr5 120054742 120054859 -32482400 + B4 SINE B4 1 117 -175 2 1500 240 86 0 0 chr5 120054906 120054941 -32482318 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 2 1500 376 129 36 36 chr5 120054995 120055132 -32482127 + (CAGAGA)n Simple_repeat Simple_repeat 2 138 0 2 1500 427 157 353 0 chr5 120055134 120055236 -32482023 + B1_Mur4 SINE Alu 5 142 -8 2 1500 525 32 0 0 chr5 120055374 120055437 -32481822 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1500 207 0 0 0 chr5 120055872 120055895 -32481364 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1500 252 77 0 0 chr5 120056138 120056177 -32481082 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 2 1500 495 245 0 0 chr5 120056267 120056365 -32480894 - B4 SINE B4 -191 101 4 2 1500 550 133 74 28 chr5 120056386 120056494 -32480765 - ID_B1 SINE B4 -3 221 109 2 1500 211 115 0 55 chr5 120056622 120056677 -32480582 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 2 1500 417 180 197 0 chr5 120056727 120056849 -32480410 - B1_Mus1 SINE Alu 0 148 3 2 1500 277 344 93 64 chr5 120056954 120057265 -32479994 + MLT1G LTR MaLR 67 427 -168 2 1500 304 143 92 31 chr5 120057274 120057339 -32479920 + PB1D10 SINE Alu 55 147 -2 2 1500 372 59 0 0 chr5 120057507 120057558 -32479701 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1500 346 312 36 7 chr5 120057651 120057790 -32479469 + B1F1 SINE Alu 1 143 -6 2 1500 225 191 0 41 chr5 120057824 120057873 -32479386 + ID4 SINE ID 15 61 -22 2 1500 507 241 0 27 chr5 120057895 120058006 -32479253 - RSINE1 SINE B4 -55 110 3 2 1500 199 189 0 0 chr5 120058110 120058147 -32479112 + MIR SINE MIR 113 149 -113 2 1500 225 0 0 0 chr5 120059405 120059430 -32477829 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1500 567 232 12 17 chr5 120059685 120059825 -32477434 - PB1D10 SINE Alu -17 132 2 2 1500 207 0 0 0 chr5 120059913 120059936 -32477323 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1500 933 121 0 0 chr5 120060142 120060425 -32476834 + (TC)n Simple_repeat Simple_repeat 1 283 0 2 1500 955 86 8 16 chr5 120060428 120060694 -32476565 + (TCTCTG)n Simple_repeat Simple_repeat 1 263 0 2 1500 294 149 0 0 chr5 120060699 120060746 -32476513 - B1_Mur3 SINE Alu -51 98 52 2 1500 343 264 0 32 chr5 120060808 120060902 -32476357 - PB1D10 SINE Alu -3 114 24 2 187 270 252 115 10 chr5 120061912 120062016 -32475243 - PB1D10 SINE Alu 0 117 3 2 1501 218 191 113 42 chr5 120062307 120062378 -32474881 - RSINE1 SINE B4 -88 77 2 2 1501 304 350 14 21 chr5 120062833 120062973 -32474286 - MIRb SINE MIR -13 255 117 2 1501 653 209 0 41 chr5 120063135 120063280 -32473979 - ID_B1 SINE B4 -5 219 81 2 1501 497 228 17 34 chr5 120063313 120063431 -32473828 - PB1D10 SINE Alu -1 116 1 2 1501 639 282 8 68 chr5 120064088 120064324 -32472935 - ID_B1 SINE B4 0 224 3 2 1501 449 259 27 54 chr5 120064345 120064362 -32472897 - B1_Mus2 SINE Alu 0 147 133 2 1501 216 0 0 0 chr5 120064362 120064386 -32472873 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1501 451 259 27 54 chr5 120064386 120064515 -32472744 - B1_Mur4 SINE Alu -15 132 5 2 1501 331 261 53 32 chr5 120064635 120064730 -32472529 - PB1D7 SINE Alu -21 99 3 2 1501 636 162 0 0 chr5 120066283 120066431 -32470828 + (TG)n Simple_repeat Simple_repeat 2 149 0 2 1501 591 185 0 0 chr5 120066472 120066623 -32470636 + (TG)n Simple_repeat Simple_repeat 2 152 0 2 1501 265 277 20 69 chr5 120066768 120066869 -32470390 - BC1_Mm scRNA scRNA -50 102 7 2 1501 233 29 29 0 chr5 120067003 120067037 -32470222 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1501 23 33 0 0 chr5 120067037 120067067 -32470192 + AT_rich Low_complexity Low_complexity 1 30 0 2 1501 305 281 0 12 chr5 120067193 120067276 -32469983 - RSINE1 SINE B4 -83 82 1 2 1501 351 308 58 0 chr5 120067296 120067416 -32469843 - B1F SINE Alu -18 131 5 2 1501 198 167 0 0 chr5 120067590 120067626 -32469633 + GA-rich Low_complexity Low_complexity 1 36 0 2 1501 1271 50 0 22 chr5 120067627 120067811 -32469448 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 1501 501 280 0 92 chr5 120067988 120068161 -32469098 + RSINE1 SINE B4 5 161 -4 2 1501 408 339 44 11 chr5 120068202 120068384 -32468875 - B3A SINE B2 -9 189 2 2 1501 1122 68 0 7 chr5 120068410 120068559 -32468700 - B1_Mus1 SINE Alu 0 148 1 2 1501 745 24 7 59 chr5 120068701 120068775 -32468484 + (TTC)n Simple_repeat Simple_repeat 1 68 0 2 1501 1086 102 17 0 chr5 120068775 120068951 -32468308 + (TCC)n Simple_repeat Simple_repeat 2 180 0 2 1501 745 24 7 59 chr5 120068951 120069011 -32468248 + (TTC)n Simple_repeat Simple_repeat 1 60 0 2 1501 872 163 0 0 chr5 120069011 120069152 -32468107 - B1_Mus1 SINE Alu -6 142 2 2 1501 486 271 8 30 chr5 120069372 120069505 -32467754 + B3A SINE B2 7 136 -62 2 1501 261 0 0 0 chr5 120069525 120069554 -32467705 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1501 456 234 23 31 chr5 120070684 120070812 -32466447 - B1F SINE Alu -1 148 22 2 1501 242 333 125 35 chr5 120070850 120071053 -32466206 + MIRb SINE MIR 36 260 -8 2 1501 501 267 82 0 chr5 120071344 120071479 -32465780 - ID_B1 SINE B4 -32 192 47 2 1501 1119 146 46 19 chr5 120071596 120071812 -32465447 - URR1A DNA MER1_type 0 226 5 2 1501 879 161 0 0 chr5 120071846 120072026 -32465233 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1501 739 58 25 43 chr5 120072693 120072856 -32464403 + (CA)n Simple_repeat Simple_repeat 1 160 0 2 1501 184 308 25 25 chr5 120073913 120073993 -32463266 - MIR SINE MIR -61 147 68 2 1501 375 154 0 0 chr5 120074108 120074173 -32463086 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1501 826 70 0 25 chr5 120074400 120074518 -32462741 + B1_Mus1 SINE Alu 34 148 0 2 1501 215 310 0 0 chr5 120074539 120074597 -32462662 + MIR SINE MIR 204 261 -1 2 1501 243 294 48 4 chr5 120074961 120075072 -32462187 + MIR SINE MIR 46 165 -103 2 1501 464 316 0 24 chr5 120075198 120075338 -32461921 - B1F2 SINE Alu -2 147 11 2 1501 194 69 0 33 chr5 120075426 120075456 -32461803 + MIR SINE MIR 118 146 -62 2 1501 219 139 0 0 chr5 120075891 120075927 -32461332 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1501 655 174 57 57 chr5 120076329 120076487 -32460772 + ID_B1 SINE B4 55 212 -12 2 1501 209 200 67 0 chr5 120077205 120077250 -32460009 + C-rich Low_complexity Low_complexity 5 52 0 2 1501 809 164 0 7 chr5 120077800 120077941 -32459318 + B1_Mus1 SINE Alu 1 140 -8 2 1501 216 0 0 0 chr5 120078614 120078638 -32458621 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 2 1501 242 116 23 0 chr5 120078803 120078846 -32458413 + (CCCCCT)n Simple_repeat Simple_repeat 3 46 0 2 1501 254 333 11 80 chr5 120079034 120079210 -32458049 + MIRm SINE MIR 104 267 -9 2 1501 695 12 12 0 chr5 120079216 120079300 -32457959 + (TG)n Simple_repeat Simple_repeat 1 85 0 2 1501 745 261 40 36 chr5 120079971 120080194 -32457065 + ID_B1 SINE B4 1 224 0 2 1501 440 244 26 17 chr5 120080233 120080350 -32456909 - PB1D7 SINE Alu -1 119 2 2 1501 1044 108 0 0 chr5 120080466 120080614 -32456645 + B1_Mus1 SINE Alu 1 148 0 2 1501 243 0 0 0 chr5 120080917 120080944 -32456315 + (CTG)n Simple_repeat Simple_repeat 1 27 0 2 1501 625 193 51 15 chr5 120080961 120081098 -32456161 + B1_Mur3 SINE Alu 1 142 -7 2 1501 306 0 0 0 chr5 120081099 120081133 -32456126 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2 1501 331 151 122 44 chr5 120081299 120081389 -32455870 + PB1D10 SINE Alu 21 117 0 2 1501 23 33 0 0 chr5 120081535 120081565 -32455694 + AT_rich Low_complexity Low_complexity 1 30 0 2 1501 750 169 22 0 chr5 120081624 120081760 -32455499 - B1_Mur3 SINE Alu 0 149 11 2 1501 375 233 0 97 chr5 120081666 120081780 -32455479 - MT2B LTR ERVL -344 257 155 2 1501 2133 107 28 3 chr5 120081997 120082315 -32454944 + ORR1A3 LTR MaLR 1 326 0 2 1501 238 315 86 94 chr5 120082315 120082560 -32454699 + MLT1F LTR MaLR 305 547 -1 3 1501 221 242 75 15 chr5 120082669 120082736 -32454523 + B2_Mm1t SINE B2 34 104 -89 3 1501 492 256 14 63 chr5 120082709 120082851 -32454408 + B3 SINE B2 77 211 -5 3 1501 699 213 0 7 chr5 120083931 120084068 -32453191 - B1_Mus2 SINE Alu -9 138 3 3 1501 776 289 18 21 chr5 120084158 120084437 -32452822 - B4A SINE B4 -14 278 1 3 1501 329 272 120 82 chr5 120084482 120084690 -32452569 + MLT1B LTR MaLR 1 216 -174 3 1501 198 0 0 0 chr5 120084800 120084822 -32452437 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3 1501 1055 211 134 18 chr5 120084925 120085209 -32452050 + MTD LTR MaLR 103 419 0 3 1501 817 290 5 0 chr5 120085342 120085559 -32451700 - ID_B1 SINE B4 -5 219 2 3 1501 996 238 145 31 chr5 120085589 120085966 -32451293 + MTD LTR MaLR 1 403 -16 3 1501 189 326 39 78 chr5 120085972 120086075 -32451184 - MIRc SINE MIR -118 150 52 3 1501 234 369 49 0 chr5 120086421 120086543 -32450716 + LTR33 LTR ERVL 47 174 -341 3 1501 301 167 100 0 chr5 120086861 120086921 -32450338 - ID4_ SINE ID -9 74 9 3 1501 710 239 104 20 chr5 120086937 120087138 -32450121 - ID_B1 SINE B4 -3 221 4 3 1501 304 366 18 1 chr5 120087154 120087283 -32449976 - MLT1H LTR MaLR -418 177 47 3 1501 233 274 0 0 chr5 120087552 120087603 -32449656 - MIRm SINE MIR -143 133 83 3 1501 185 0 40 0 chr5 120088105 120088130 -32449129 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 3 1501 307 319 8 49 chr5 120088723 120088845 -32448414 + MIRm SINE MIR 37 153 -123 3 1501 464 202 25 42 chr5 120088957 120089076 -32448183 + PB1D10 SINE Alu 1 117 0 3 1501 452 248 22 12 chr5 120089104 120089230 -32448029 + PB1D9 SINE Alu 10 136 -13 3 1501 28 0 0 0 chr5 120089317 120089345 -32447914 + AT_rich Low_complexity Low_complexity 1 28 0 3 1501 398 260 128 16 chr5 120089378 120089503 -32447756 - B3A SINE B2 -30 168 30 3 1501 324 304 34 43 chr5 120089482 120089599 -32447660 - ID_B1 SINE B4 -106 118 3 3 1501 606 196 57 14 chr5 120089695 120089835 -32447424 + B1F2 SINE Alu 2 147 -2 3 1501 684 0 0 0 chr5 120090378 120090454 -32446805 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 3 1501 283 372 23 15 chr5 120090468 120090599 -32446660 - MLT1H LTR MaLR -295 254 123 3 1501 180 97 0 0 chr5 120090670 120090701 -32446558 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 3 1501 207 0 0 0 chr5 120091900 120091923 -32445336 + (CAGGC)n Simple_repeat Simple_repeat 1 23 0 3 1501 392 271 39 3 chr5 120092548 120092668 -32444591 + PB1D7 SINE Alu 5 126 -21 3 1501 453 186 17 17 chr5 120092673 120092793 -32444466 + GA-rich Low_complexity Low_complexity 4 123 0 3 1501 425 291 8 52 chr5 120092912 120093046 -32444213 + B4A SINE B4 104 231 -61 3 1501 253 284 30 0 chr5 120093065 120093132 -32444127 + B1_Mur4 SINE Alu 35 103 -47 3 1501 268 258 0 15 chr5 120093184 120093251 -32444008 + B4A SINE B4 226 291 -1 3 1501 315 224 16 144 chr5 120093334 120093459 -32443800 + MT2B LTR ERVL 155 263 -338 3 1501 592 210 35 48 chr5 120093347 120093492 -32443767 + B1_Mur3 SINE Alu 6 148 -1 3 1501 297 0 0 0 chr5 120093626 120093659 -32443600 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1501 301 239 42 0 chr5 120093705 120093776 -32443483 + ID4_ SINE ID 3 76 -7 3 1501 203 179 0 0 chr5 120094260 120094299 -32442960 + A-rich Low_complexity Low_complexity 1 39 0 3 1501 219 204 0 0 chr5 120094549 120094603 -32442656 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 3 1501 300 137 0 0 chr5 120094609 120094660 -32442599 + (T)n Simple_repeat Simple_repeat 1 51 0 3 1501 696 228 47 28 chr5 120094660 120094872 -32442387 - B3 SINE B2 0 216 1 3 1501 572 238 150 0 chr5 120094876 120095023 -32442236 - ID_B1 SINE B4 -1 223 55 3 1501 210 71 0 0 chr5 120095067 120095095 -32442164 + (CTA)n Simple_repeat Simple_repeat 2 29 0 3 1501 255 245 80 62 chr5 120095096 120095209 -32442050 - PB1D10 SINE Alu -2 115 1 3 1501 396 221 0 0 chr5 120095428 120095464 -32441795 + T-rich Low_complexity Low_complexity 60 95 0 3 1501 1584 16 21 0 chr5 120095464 120095652 -32441607 - B2_Mm1a SINE B2 0 193 2 3 1501 396 221 0 0 chr5 120095652 120095710 -32441549 + T-rich Low_complexity Low_complexity 2 59 0 3 1501 387 167 0 0 chr5 120095733 120095799 -32441460 - B1_Mur2 SINE Alu -10 139 74 3 1501 701 164 54 15 chr5 120095784 120095914 -32441345 - B1_Mus1 SINE Alu -13 135 1 3 1501 243 0 0 0 chr5 120095918 120095945 -32441314 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1501 638 204 103 26 chr5 120096488 120096644 -32440615 + B4A SINE B4 64 231 -61 3 1501 586 188 108 83 chr5 120096648 120096739 -32440520 + RSINE1 SINE B4 3 84 -81 3 1501 279 0 0 0 chr5 120096739 120096770 -32440489 + (GA)n Simple_repeat Simple_repeat 2 32 0 3 1501 586 188 108 83 chr5 120096770 120096835 -32440424 + RSINE1 SINE B4 85 163 -2 3 1501 315 224 187 0 chr5 120096977 120097084 -32440175 + PB1D7 SINE Alu 6 128 -21 3 1501 300 102 0 0 chr5 120097392 120097441 -32439818 + (C)n Simple_repeat Simple_repeat 1 49 0 3 1501 484 252 30 72 chr5 120097867 120098034 -32439225 - B3A SINE B2 -5 193 34 3 1501 580 279 89 5 chr5 120098071 120098273 -32438986 - ID_B1 SINE B4 -5 219 1 3 1501 215 0 0 62 chr5 120098283 120098315 -32438944 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 3 1501 496 102 265 0 chr5 120098369 120098467 -32438792 + Lx4A LINE L1 6935 7058 0 3 1501 23 33 0 0 chr5 120098477 120098507 -32438752 + AT_rich Low_complexity Low_complexity 1 30 0 3 1501 423 31 46 0 chr5 120098577 120098642 -32438617 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1501 635 227 40 21 chr5 120098642 120098811 -32438448 - B3A SINE B2 -33 183 1 3 1501 233 185 0 15 chr5 120099507 120099573 -32437686 + GA-rich Low_complexity Low_complexity 2 66 0 3 1501 282 194 0 0 chr5 120100292 120100364 -32436895 + T-rich Low_complexity Low_complexity 1 72 0 3 1501 1089 88 0 0 chr5 120100364 120100511 -32436748 - B1_Mus1 SINE Alu 0 148 2 3 1501 25 31 0 0 chr5 120100513 120100545 -32436714 + AT_rich Low_complexity Low_complexity 1 32 0 3 1501 287 281 0 35 chr5 120100556 120100641 -32436618 + G-rich Low_complexity Low_complexity 6 87 0 3 1501 448 312 7 28 chr5 120100641 120100786 -32436473 - RSINE1 SINE B4 -21 144 3 3 1501 22 0 0 0 chr5 120100794 120100816 -32436443 + AT_rich Low_complexity Low_complexity 1 22 0 3 1501 459 328 30 0 chr5 120100816 120100950 -32436309 - RSINE1 SINE B4 -4 161 24 3 1501 339 78 0 0 chr5 120101024 120101075 -32436184 + (TCTCTG)n Simple_repeat Simple_repeat 3 53 0 3 1501 399 127 0 0 chr5 120102233 120102296 -32434963 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 1501 818 242 5 45 chr5 120102304 120102503 -32434756 - B3 SINE B2 -25 191 1 3 1501 1030 168 108 5 chr5 120102781 120102985 -32434274 + URR1B DNA MER1_type 1 225 0 3 1501 913 101 50 195 chr5 120103049 120103132 -32434127 - B2_Mm2 SINE B2 -5 190 110 3 1501 1037 103 0 0 chr5 120103132 120103278 -32433981 + B1_Mus2 SINE Alu 2 147 0 3 1501 913 101 50 195 chr5 120103278 120103415 -32433844 - B2_Mm2 SINE B2 -86 109 2 3 1501 1204 41 0 0 chr5 120103438 120103584 -32433675 - B1_Mm SINE Alu 0 147 2 3 1501 381 309 7 106 chr5 120104105 120104247 -32433012 - PB1D10 SINE Alu -14 134 6 3 1501 334 281 0 12 chr5 120104340 120104423 -32432836 + B1F SINE Alu 48 129 -20 3 1501 837 149 0 0 chr5 120104472 120104606 -32432653 + B1_Mus1 SINE Alu 2 135 -13 3 1501 198 0 0 0 chr5 120104606 120104628 -32432631 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 3 1501 350 263 29 39 chr5 120104730 120104833 -32432426 + B1F SINE Alu 43 144 -5 3 1501 225 94 0 0 chr5 120104963 120104995 -32432264 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1501 902 229 14 14 chr5 120105053 120105274 -32431985 + ID_B1 SINE B4 2 222 -2 3 1501 335 69 0 33 chr5 120106148 120106208 -32431051 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 3 1501 477 0 0 0 chr5 120107294 120107347 -32429912 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1501 364 178 296 44 chr5 120107484 120107619 -32429640 + ID_B1 SINE B4 9 177 -47 3 1501 213 24 98 0 chr5 120108404 120108445 -32428814 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 3 1501 242 241 0 0 chr5 120109307 120109361 -32427898 - B1F SINE Alu -51 98 45 3 1501 771 69 0 0 chr5 120109546 120109648 -32427611 + (TC)n Simple_repeat Simple_repeat 1 102 0 3 1501 475 300 0 0 chr5 120109723 120109843 -32427416 - B1F2 SINE Alu -8 141 22 3 1501 592 199 215 6 chr5 120109895 120110067 -32427192 - B3 SINE B2 -6 210 3 3 1501 621 0 0 0 chr5 120110405 120110474 -32426785 + (CCA)n Simple_repeat Simple_repeat 1 69 0 3 1501 486 0 0 0 chr5 120111883 120111937 -32425322 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 3 1501 183 156 0 0 chr5 120112289 120112321 -32424938 + A-rich Low_complexity Low_complexity 1 32 0 3 1501 243 125 0 0 chr5 120112774 120112814 -32424445 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1501 414 0 0 0 chr5 120115082 120115128 -32422131 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 1501 279 0 0 0 chr5 120115128 120115158 -32422101 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1501 209 195 0 0 chr5 120115159 120115200 -32422059 + CT-rich Low_complexity Low_complexity 1 41 0 3 1501 510 46 0 0 chr5 120115343 120115408 -32421851 + (GAAA)n Simple_repeat Simple_repeat 3 67 0 3 1501 304 245 31 31 chr5 120116606 120116703 -32420556 + GA-rich Low_complexity Low_complexity 1 97 0 3 1501 1163 68 7 0 chr5 120117106 120117252 -32420007 - B1_Mus1 SINE Alu 0 148 2 4 1501 192 158 0 0 chr5 120121069 120121107 -32416152 + CT-rich Low_complexity Low_complexity 2 39 0 4 1501 25 0 0 0 chr5 120121215 120121240 -32416019 + AT_rich Low_complexity Low_complexity 1 25 0 4 1501 189 0 0 0 chr5 120121431 120121452 -32415807 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1501 21 0 0 0 chr5 120121940 120121961 -32415298 + AT_rich Low_complexity Low_complexity 1 21 0 4 1501 198 0 0 0 chr5 120123169 120123191 -32414068 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1501 219 36 0 0 chr5 120126129 120126157 -32411102 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1501 252 0 0 0 chr5 120127076 120127104 -32410155 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1501 218 32 32 0 chr5 120127982 120128013 -32409246 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 4 1501 491 157 208 32 chr5 120128145 120128270 -32408989 + B1_Mus2 SINE Alu 1 147 0 4 1501 450 49 0 0 chr5 120129041 120129102 -32408157 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1501 208 135 0 0 chr5 120129490 120129527 -32407732 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1501 549 68 0 0 chr5 120129634 120129708 -32407551 + (TAAA)n Simple_repeat Simple_repeat 1 74 0 4 1501 230 312 83 31 chr5 120130139 120130235 -32407024 - MIR SINE MIR -106 156 56 4 1501 254 185 0 97 chr5 120131365 120131437 -32405822 - MIR SINE MIR -88 120 56 4 1501 360 0 0 0 chr5 120131706 120131746 -32405513 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1501 333 0 0 0 chr5 120131746 120131782 -32405477 + (GA)n Simple_repeat Simple_repeat 1 37 0 4 1501 252 148 0 0 chr5 120134570 120134631 -32402628 + (A)n Simple_repeat Simple_repeat 1 61 0 4 1501 195 42 0 0 chr5 120135439 120135463 -32401796 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 4 1501 347 0 23 0 chr5 120135527 120135570 -32401689 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1501 195 42 0 0 chr5 120136078 120136102 -32401157 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 4 1501 243 146 0 0 chr5 120136434 120136475 -32400784 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1501 225 83 0 0 chr5 120138717 120138753 -32398506 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1501 180 0 0 0 chr5 120140479 120140499 -32396760 + (GGGTG)n Simple_repeat Simple_repeat 2 21 0 4 1501 215 357 11 87 chr5 120141615 120141799 -32395460 + B4A SINE B4 25 194 -98 4 1501 246 255 21 0 chr5 120141869 120141963 -32395296 + (TTTA)n Simple_repeat Simple_repeat 3 98 0 4 1501 243 0 0 0 chr5 120142756 120142783 -32394476 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1501 760 256 75 20 chr5 120143007 120143206 -32394053 - ID_B1 SINE B4 -13 211 2 4 1501 380 130 168 0 chr5 120143215 120143320 -32393939 - B2_Mm2 SINE B2 -4 189 47 4 1501 1212 90 16 22 chr5 120143386 120143568 -32393691 - B2_Mm2 SINE B2 -14 181 1 4 1501 477 0 0 0 chr5 120143768 120143821 -32393438 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1501 534 176 0 0 chr5 120143823 120143908 -32393351 - B1_Mur3 SINE Alu -62 87 3 4 1501 582 253 6 0 chr5 120144115 120144442 -32392817 + (TG)n Simple_repeat Simple_repeat 1 329 0 4 1501 206 275 29 14 chr5 120144564 120144634 -32392625 + CT-rich Low_complexity Low_complexity 4 74 0 4 1501 292 43 43 0 chr5 120144646 120144692 -32392567 + (TCCCC)n Simple_repeat Simple_repeat 1 48 0 4 1501 359 231 32 21 chr5 120145462 120145555 -32391704 - PB1D10 SINE Alu 0 117 24 4 1501 208 333 53 18 chr5 120145573 120145686 -32391573 + MIRb SINE MIR 31 147 -121 4 1501 328 239 14 0 chr5 120145699 120145770 -32391489 + ID4 SINE ID 4 75 -8 4 1501 421 209 43 21 chr5 120146443 120146536 -32390723 + ID_B1 SINE B4 109 203 -21 4 1501 215 311 16 131 chr5 120146707 120146829 -32390430 + B4A SINE B4 35 142 -150 4 1501 270 116 0 0 chr5 120146979 120147022 -32390237 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 4 1501 281 256 108 12 chr5 120147089 120147172 -32390087 - RMER30 DNA MER1_type -30 172 82 4 1501 681 269 114 71 chr5 120147167 120147189 -32390070 - B4A SINE B4 0 292 276 4 1501 273 29 0 0 chr5 120147189 120147223 -32390036 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1501 681 269 114 71 chr5 120147223 120147480 -32389779 - B4A SINE B4 -17 275 1 4 1501 386 259 12 0 chr5 120147497 120147578 -32389681 - RMER30 DNA MER1_type -120 82 1 4 1501 351 0 0 0 chr5 120147669 120147708 -32389551 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1501 823 261 0 0 chr5 120147716 120147869 -32389390 - RSINE1 SINE B4 -10 155 3 4 1501 24 0 0 0 chr5 120147894 120147918 -32389341 + AT_rich Low_complexity Low_complexity 1 24 0 4 1501 1132 31 0 0 chr5 120148091 120148218 -32389041 + B1_Mm SINE Alu 2 128 -19 4 1501 381 280 95 36 chr5 120148258 120148395 -32388864 + B1F2 SINE Alu 3 147 -2 4 1501 345 274 37 9 chr5 120148942 120149049 -32388210 - PB1D10 SINE Alu -7 110 1 4 1501 648 284 0 25 chr5 120149142 120149301 -32387958 - B3 SINE B2 -42 174 20 4 1501 701 177 116 0 chr5 120149301 120149370 -32387889 + ORR1B2 LTR MaLR 1 82 -296 4 1501 3505 28 2 0 chr5 120149370 120149765 -32387494 - MTA_Mm LTR MaLR 0 396 1 4 1501 701 177 116 0 chr5 120149765 120149842 -32387417 + ORR1B2 LTR MaLR 83 163 -215 4 1501 792 96 0 0 chr5 120149846 120149961 -32387298 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 4 1501 207 0 0 0 chr5 120149965 120149988 -32387271 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 4 1501 1226 82 0 0 chr5 120149989 120150147 -32387112 - B2_Mm2 SINE B2 -37 158 1 4 1501 1206 155 31 0 chr5 120150152 120150345 -32386914 + ORR1B2 LTR MaLR 161 359 -8 4 1501 1200 256 98 20 chr5 120150387 120150785 -32386474 + BGLII_B LTR ERVK 5 433 -8 4 1501 295 91 203 43 chr5 120150840 120150897 -32386362 + PB1D9 SINE Alu 41 109 -11 4 1501 243 0 0 0 chr5 120150897 120150924 -32386335 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4 1501 295 91 203 43 chr5 120150924 120150935 -32386324 + PB1D9 SINE Alu 110 120 0 4 1501 1389 82 0 35 chr5 120151296 120151497 -32385762 - B2_Mm2 SINE B2 0 195 2 4 1501 303 259 124 44 chr5 120151650 120151672 -32385587 + ID SINE ID 55 85 -139 4 1501 419 272 67 10 chr5 120151672 120151776 -32385483 + PB1D9 SINE Alu 2 111 -9 4 1501 207 100 0 0 chr5 120152823 120152853 -32384406 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1501 254 257 82 74 chr5 120152976 120153098 -32384161 - YREP_Mm Unknown Unknown -1468 344 222 4 1501 866 140 7 7 chr5 120153011 120153148 -32384111 + B1_Mur4 SINE Alu 14 150 0 4 1501 793 201 70 5 chr5 120153154 120153339 -32383920 - B3 SINE B2 -15 201 5 4 1501 1799 258 83 30 chr5 120153347 120153982 -32383277 - Lx8 LINE L1 -130 7343 6675 4 1501 558 233 30 30 chr5 120153956 120154124 -32383135 - Lx8 LINE L1 -1017 6456 6289 4 1501 447 181 105 11 chr5 120154158 120154212 -32383047 - B1_Mm SINE Alu -1 146 85 4 1501 1134 40 0 0 chr5 120154212 120154360 -32382899 + (TC)n Simple_repeat Simple_repeat 1 148 0 4 1501 447 181 105 11 chr5 120154360 120154400 -32382859 - B1_Mm SINE Alu -63 84 44 4 1501 278 148 0 85 chr5 120154403 120154418 -32382841 - B1_Mur4 SINE Alu 0 150 139 4 1501 829 179 27 14 chr5 120154418 120154565 -32382694 - B1_Mur3 SINE Alu 0 149 1 4 1501 290 124 0 13 chr5 120154565 120154615 -32382644 - B1_Mus2 SINE Alu -12 138 89 4 1501 568 145 92 25 chr5 120154615 120154735 -32382524 - URR1B DNA MER1_type 0 225 98 4 1501 210 37 0 0 chr5 120154735 120154762 -32382497 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1501 821 191 53 119 chr5 120154965 120155169 -32382090 + B3 SINE B2 2 182 -34 4 1501 435 19 0 0 chr5 120155169 120155221 -32382038 + (GA)n Simple_repeat Simple_repeat 2 53 0 4 1501 821 191 53 119 chr5 120155221 120155242 -32382017 + B3 SINE B2 183 211 -5 4 1501 340 346 94 0 chr5 120155363 120155490 -32381769 - RSINE1 SINE B4 -13 152 14 4 1501 501 62 0 0 chr5 120155493 120155558 -32381701 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 4 1501 661 288 30 30 chr5 120155580 120155626 -32381633 - B3A SINE B2 -1 197 155 4 1501 195 42 0 0 chr5 120155626 120155650 -32381609 + (TG)n Simple_repeat Simple_repeat 1 24 0 4 1501 661 288 30 30 chr5 120155650 120155800 -32381459 - B3A SINE B2 -44 154 1 4 1501 808 169 49 7 chr5 120155831 120155974 -32381285 - B1_Mur4 SINE Alu 0 150 2 4 1501 713 218 7 7 chr5 120156008 120156151 -32381108 + ID_B1 SINE B4 78 220 -4 4 1501 27 29 0 0 chr5 120156156 120156190 -32381069 + AT_rich Low_complexity Low_complexity 1 34 0 4 1501 390 204 22 22 chr5 120157151 120157241 -32380018 - PB1D10 SINE Alu 0 117 28 4 1501 256 226 106 33 chr5 120157649 120157774 -32379485 - MIRc SINE MIR -117 151 18 4 1501 247 209 112 160 chr5 120158926 120158971 -32378288 - B2_Mm2 SINE B2 -11 184 151 4 1501 345 24 0 0 chr5 120158971 120159013 -32378246 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1501 343 168 342 36 chr5 120159013 120159092 -32378167 - B3 SINE B2 -46 170 66 4 1501 306 0 0 0 chr5 120159092 120159126 -32378133 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1501 423 0 0 0 chr5 120159126 120159172 -32378087 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1501 316 261 0 0 chr5 120159329 120159398 -32377861 - ID4 SINE ID -10 73 5 4 1501 252 284 13 13 chr5 120159445 120159520 -32377739 - ZP3AR Satellite Satellite -87 125 51 4 1501 1713 21 0 0 chr5 120159615 120159804 -32377455 - B2_Mm1a SINE B2 -3 190 2 4 1501 261 278 44 11 chr5 120159805 120159896 -32377363 - MIR SINE MIR -112 150 57 4 1501 256 296 49 0 chr5 120160380 120160461 -32376798 + BC1_Mm scRNA scRNA 5 89 -63 4 1501 224 197 15 29 chr5 120160475 120160504 -32376755 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 4 1501 252 0 0 0 chr5 120160504 120160532 -32376727 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1501 224 197 15 29 chr5 120160532 120160570 -32376689 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4 1501 806 132 7 0 chr5 120160628 120160764 -32376495 + (TTTC)n Simple_repeat Simple_repeat 3 139 0 4 1501 199 254 50 17 chr5 120160837 120160897 -32376362 + MIR SINE MIR 82 143 -65 4 1501 314 293 0 24 chr5 120160949 120161033 -32376226 + ID4_ SINE ID 1 82 -1 4 1501 756 235 39 0 chr5 120161107 120161260 -32375999 + RSINE1 SINE B4 5 163 -2 4 1501 195 42 0 0 chr5 120161265 120161289 -32375970 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 5 1501 275 244 11 34 chr5 120161495 120161584 -32375675 - B3 SINE B2 -1 215 129 5 1501 346 223 123 28 chr5 120161584 120161690 -32375569 + PB1D9 SINE Alu 5 120 0 5 1501 850 219 43 0 chr5 120161707 120161871 -32375388 + B3 SINE B2 1 171 -45 5 1501 362 219 112 19 chr5 120162099 120162206 -32375053 + PB1D10 SINE Alu 1 117 0 5 1501 313 272 166 45 chr5 120162224 120162447 -32374812 + B4 SINE B4 43 292 0 5 1501 264 257 119 10 chr5 120162801 120162930 -32374329 - MIRb SINE MIR -39 229 81 5 1501 605 261 22 0 chr5 120163282 120163416 -32373843 - B1F SINE Alu -2 147 11 5 1501 399 257 17 17 chr5 120163572 120163687 -32373572 - PB1D9 SINE Alu -1 119 5 5 1501 846 245 52 29 chr5 120163704 120163864 -32373395 + B3 SINE B2 1 165 -51 5 1501 330 67 0 0 chr5 120163864 120163909 -32373350 + (CATA)n Simple_repeat Simple_repeat 2 46 0 5 1501 846 245 52 29 chr5 120163909 120163958 -32373301 + B3 SINE B2 166 215 -1 5 1501 688 275 0 6 chr5 120164003 120164164 -32373095 - RSINE1 SINE B4 -4 161 2 5 1501 1296 71 12 12 chr5 120164489 120164648 -32372611 + B2_Mm2 SINE B2 1 158 -37 5 1501 243 0 0 0 chr5 120164648 120164675 -32372584 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 5 1501 1296 71 12 12 chr5 120164675 120164687 -32372572 + B2_Mm2 SINE B2 159 172 -23 5 1501 258 322 0 0 chr5 120165649 120165708 -32371551 + B4 SINE B4 234 292 0 5 1501 363 236 3 14 chr5 120165739 120166094 -32371165 + (CA)n Simple_repeat Simple_repeat 1 350 0 5 1501 318 67 0 0 chr5 120166103 120166148 -32371111 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1501 495 172 0 48 chr5 120166173 120166290 -32370969 + (CA)n Simple_repeat Simple_repeat 1 109 0 5 1501 402 21 0 0 chr5 120166290 120166337 -32370922 + (TC)n Simple_repeat Simple_repeat 1 47 0 5 1501 495 179 0 26 chr5 120166337 120166472 -32370787 + (CA)n Simple_repeat Simple_repeat 1 131 0 5 1501 351 212 24 24 chr5 120167195 120167277 -32369982 - PB1D10 SINE Alu 0 117 36 5 1501 387 73 0 0 chr5 120167279 120167334 -32369925 + (TG)n Simple_repeat Simple_repeat 1 55 0 5 1501 261 0 0 0 chr5 120167819 120167848 -32369411 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1501 1391 59 16 11 chr5 120167857 120168045 -32369214 - B2_Mm2 SINE B2 -6 189 1 5 1501 198 0 0 0 chr5 120168051 120168073 -32369186 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 5 1501 852 95 16 16 chr5 120168082 120168210 -32369049 - B1_Mus1 SINE Alu -1 147 20 5 1501 1206 48 7 0 chr5 120168490 120168636 -32368623 - B1_Mus1 SINE Alu 0 148 2 5 1501 576 121 0 0 chr5 120168966 120169057 -32368202 + (ATG)n Simple_repeat Simple_repeat 1 91 0 5 1501 417 278 36 27 chr5 120169057 120169168 -32368091 - RSINE1 SINE B4 0 165 54 5 1501 656 233 22 22 chr5 120169342 120169478 -32367781 - B1F SINE Alu -2 147 12 5 1501 259 245 47 122 chr5 120169407 120169514 -32367745 - MT2B2 LTR ERVL -344 240 142 5 1501 230 258 106 0 chr5 120169624 120169690 -32367569 + ID SINE ID 17 89 -135 5 1501 1214 119 11 0 chr5 120169694 120169870 -32367389 + B2_Mm1t SINE B2 2 179 -14 5 1501 323 121 460 10 chr5 120169918 120170018 -32367241 + B2_Mm2 SINE B2 48 192 -3 5 1501 629 258 16 21 chr5 120170053 120170217 -32367042 + ID_B1 SINE B4 64 224 -68 5 1501 287 326 65 29 chr5 120170093 120170232 -32367027 - YREP_Mm Unknown Unknown -1514 298 155 5 1501 613 219 0 31 chr5 120170234 120170361 -32366898 + RSINE1 SINE B4 2 124 -41 5 1501 747 104 0 0 chr5 120170361 120170476 -32366783 + (CA)n Simple_repeat Simple_repeat 2 116 0 5 1501 259 225 155 0 chr5 120171352 120171423 -32365836 + B1F2 SINE Alu 22 103 -24 5 1501 25 65 0 0 chr5 120171502 120171548 -32365711 + AT_rich Low_complexity Low_complexity 1 46 0 5 1501 659 245 71 0 chr5 120171583 120171738 -32365521 - ID_B1 SINE B4 0 224 59 5 1501 351 247 52 31 chr5 120171780 120171876 -32365383 - B1F SINE Alu -45 104 7 5 1501 332 135 65 0 chr5 120172124 120172212 -32365047 - B3A SINE B2 -63 130 27 5 1501 508 276 89 59 chr5 120172327 120172597 -32364662 - ORR1E LTR MaLR -9 350 73 5 1501 534 241 129 14 chr5 120172646 120172785 -32364474 + MTEb LTR MaLR 1 155 -224 5 1501 654 253 59 48 chr5 120172793 120172818 -32364441 - RSINE1 SINE B4 -44 248 208 5 1501 728 42 10 0 chr5 120172818 120172914 -32364345 - B1_Mus2 SINE Alu -1 146 50 5 1501 654 253 59 48 chr5 120172914 120173033 -32364226 - RSINE1 SINE B4 -44 207 2 5 1501 2234 139 157 28 chr5 120173054 120173519 -32363740 + RLTR11A LTR ERVK 4 528 0 5 1501 1558 162 22 113 chr5 120173781 120174232 -32363027 + RMER17C LTR ERVK 1 410 0 5 1501 492 294 38 71 chr5 120175002 120175214 -32362045 + B4A SINE B4 2 206 -86 5 1501 3619 18 0 0 chr5 120175222 120175618 -32361641 + MTA_Mm LTR MaLR 1 396 0 5 1501 9203 37 4 4 chr5 120175618 120176716 -32360543 + MTA_Mm-int LTR MaLR 1 1098 0 5 1501 3619 18 0 0 chr5 120176716 120177112 -32360147 + MTA_Mm LTR MaLR 1 396 0 5 1501 317 24 24 0 chr5 120177194 120177236 -32360023 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1501 1042 185 105 5 chr5 120177388 120177578 -32359681 + B3 SINE B2 2 210 -6 5 1501 30 0 0 0 chr5 120177633 120177663 -32359596 + AT_rich Low_complexity Low_complexity 1 30 0 5 1501 782 208 14 0 chr5 120177664 120177808 -32359451 - B1_Mur3 SINE Alu -1 148 3 5 1501 1238 116 11 16 chr5 120177858 120178042 -32359217 - B2_Mm1t SINE B2 -9 184 2 5 1501 325 234 42 21 chr5 120178042 120178063 -32359196 - HAL1-3A_ME LINE L1 -785 2073 2053 5 1501 991 190 59 20 chr5 120178063 120178267 -32358992 - B3 SINE B2 -2 214 3 5 1501 325 234 42 21 chr5 120178267 120178288 -32358971 - HAL1-3A_ME LINE L1 -806 2052 2030 5 1501 1011 61 0 0 chr5 120178288 120178419 -32358840 + (TTTC)n Simple_repeat Simple_repeat 4 134 0 5 1501 325 234 42 21 chr5 120178419 120178471 -32358788 - HAL1-3A_ME LINE L1 -829 2029 1977 5 1501 634 193 0 14 chr5 120178498 120178931 -32358328 + (TG)n Simple_repeat Simple_repeat 1 426 0 5 1501 464 213 6 17 chr5 120178950 120179131 -32358128 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1501 482 324 28 0 chr5 120179142 120179284 -32357975 - RSINE1 SINE B4 0 165 20 5 1501 321 216 118 81 chr5 120179403 120179539 -32357720 + MT2B LTR ERVL 123 263 -338 5 1501 617 237 44 15 chr5 120179441 120179578 -32357681 + B1_Mur1 SINE Alu 8 148 -1 5 1501 212 0 0 35 chr5 120179600 120179629 -32357630 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1501 222 37 0 0 chr5 120179678 120179705 -32357554 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5 1501 302 206 16 16 chr5 120179711 120179775 -32357484 - PB1D10 SINE Alu -46 71 8 5 1501 21 0 0 0 chr5 120180037 120180058 -32357201 + AT_rich Low_complexity Low_complexity 1 21 0 5 1501 216 97 0 0 chr5 120180712 120180743 -32356516 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 5 1501 901 47 59 6 chr5 120180862 120181032 -32356227 + (GA)n Simple_repeat Simple_repeat 2 180 0 5 1501 450 120 0 0 chr5 120181307 120181382 -32355877 + (GGA)n Simple_repeat Simple_repeat 3 77 0 5 1501 703 185 22 58 chr5 120181426 120181564 -32355695 + B1_Mur3 SINE Alu 2 134 -15 5 1501 21 0 0 0 chr5 120181567 120181588 -32355671 + AT_rich Low_complexity Low_complexity 1 21 0 5 1501 1545 27 21 16 chr5 120181641 120181828 -32355431 - B2_Mm1a SINE B2 -5 188 1 5 1501 241 286 0 28 chr5 120182068 120182140 -32355119 + MADE2 DNA Mariner 1 70 -10 5 1501 686 237 136 0 chr5 120182263 120182440 -32354819 - ID_B1 SINE B4 -15 209 9 5 1501 282 247 0 0 chr5 120182463 120182556 -32354703 + GA-rich Low_complexity Low_complexity 1 93 0 5 1501 269 269 115 62 chr5 120182570 120182761 -32354498 - B4 SINE B4 -18 274 78 5 1501 502 146 311 0 chr5 120183351 120183454 -32353805 + B1_Mus1 SINE Alu 1 135 -13 5 1501 282 321 25 0 chr5 120183504 120183585 -32353674 + RSINE1 SINE B4 83 165 0 5 1501 287 260 103 145 chr5 120183846 120184080 -32353179 - MTEa LTR MaLR -31 348 108 5 1501 830 158 13 27 chr5 120184102 120184252 -32353007 - B1_Mur4 SINE Alu 0 150 3 5 1501 915 189 152 27 chr5 120184269 120184492 -32352767 + MTD LTR MaLR 2 252 -167 5 1501 1680 236 110 14 chr5 120184529 120184958 -32352301 + RMER19C LTR ERVK 138 607 -4 5 1501 998 151 0 0 chr5 120184972 120185118 -32352141 - B1_Mus1 SINE Alu -1 147 2 5 1501 243 271 51 29 chr5 120185011 120185129 -32352130 - MTEa-int LTR MaLR -755 754 633 5 1501 846 156 82 0 chr5 120185129 120185264 -32351995 - B1_Mur3 SINE Alu -2 147 2 5 1501 243 271 51 29 chr5 120185264 120185282 -32351977 - MTEa-int LTR MaLR -877 632 615 5 1501 1067 186 39 5 chr5 120185294 120185499 -32351760 - B3 SINE B2 0 216 5 5 1501 346 157 261 42 chr5 120185499 120185625 -32351634 + MTD LTR MaLR 240 404 -15 5 1501 399 203 83 113 chr5 120185630 120185763 -32351496 - MTEa LTR MaLR -250 129 1 5 1501 217 160 22 101 chr5 120185809 120185948 -32351311 + (TATTG)n Simple_repeat Simple_repeat 1 128 0 5 1501 459 274 0 34 chr5 120186052 120186169 -32351090 - PB1D10 SINE Alu 0 117 5 5 1501 396 0 0 0 chr5 120186171 120186215 -32351044 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 5 1501 417 280 8 17 chr5 120186224 120186344 -32350915 - RSINE1 SINE B4 0 165 47 5 1501 2779 18 18 0 chr5 120186351 120186683 -32350576 - ORR1A0 LTR MaLR -8 338 1 5 1501 228 200 25 0 chr5 120186683 120186723 -32350536 - RSINE1 SINE B4 -122 43 3 5 1501 1291 116 16 0 chr5 120186735 120186925 -32350334 - B2_Mm2 SINE B2 -2 193 1 5 1501 658 150 104 15 chr5 120187072 120187207 -32350052 + B1_Mur3 SINE Alu 3 149 0 5 1501 548 165 28 28 chr5 120187921 120188355 -32348904 + (TG)n Simple_repeat Simple_repeat 1 434 0 5 1501 285 250 328 0 chr5 120188410 120188526 -32348733 - B4A SINE B4 -20 272 119 5 1501 220 263 18 0 chr5 120188547 120188604 -32348655 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1501 1266 82 54 16 chr5 120188810 120188822 -32348437 - B2_Mm2 SINE B2 -3 192 181 5 1501 513 0 0 0 chr5 120188822 120188879 -32348380 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 5 1501 441 0 0 0 chr5 120188888 120188937 -32348322 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1501 1266 82 54 16 chr5 120188937 120189099 -32348160 - B2_Mm2 SINE B2 -32 163 3 5 1501 536 256 60 0 chr5 120189160 120189293 -32347966 - ID_B1 SINE B4 -2 222 82 6 1501 183 42 0 0 chr5 120189303 120189327 -32347932 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1501 997 203 14 42 chr5 120189482 120189698 -32347561 - B3 SINE B2 -1 215 6 6 1501 1017 101 0 0 chr5 120189905 120190053 -32347206 + (AGGGGG)n Simple_repeat Simple_repeat 5 152 0 6 1501 323 94 31 0 chr5 120190086 120190150 -32347109 + (CAGA)n Simple_repeat Simple_repeat 2 67 0 6 1501 382 119 17 0 chr5 120190150 120190209 -32347050 + HAL1-3A_ME LINE L1 1976 2035 -823 6 1501 206 277 35 24 chr5 120190374 120190459 -32346800 + GA-rich Low_complexity Low_complexity 5 90 0 6 1501 198 0 0 0 chr5 120190516 120190538 -32346721 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 6 1501 405 156 0 25 chr5 120190543 120190607 -32346652 - B3 SINE B2 -117 99 38 6 1501 863 126 0 59 chr5 120190607 120190759 -32346500 - URR1B DNA MER1_type 0 225 83 6 1501 391 294 138 60 chr5 120190608 120190840 -32346419 + CYRA11_Mm Unknown Y-chromosome 172 421 -196 6 1501 380 298 120 9 chr5 120190850 120191104 -32346155 - L1M2 LINE L1 -480 5400 5127 6 1501 999 77 0 0 chr5 120191411 120191566 -32345693 + (TG)n Simple_repeat Simple_repeat 2 156 0 6 1501 549 234 57 0 chr5 120191568 120191692 -32345567 - RSINE1 SINE B4 -32 133 3 6 1501 355 250 11 22 chr5 120191961 120192051 -32345208 + PB1D10 SINE Alu 25 113 -4 6 187 692 162 29 14 chr5 120192838 120193188 -32344071 + (TG)n Simple_repeat Simple_repeat 1 355 0 6 1502 278 204 35 0 chr5 120193211 120193324 -32343935 + (TG)n Simple_repeat Simple_repeat 2 118 0 6 1502 572 150 44 0 chr5 120193336 120193496 -32343763 + (TG)n Simple_repeat Simple_repeat 2 168 0 6 1502 348 200 0 0 chr5 120194612 120194687 -32342572 + (ATGGTG)n Simple_repeat Simple_repeat 6 80 0 6 1502 442 224 293 79 chr5 120194935 120195209 -32342050 - RMER16 LTR ERVK 0 533 201 6 1502 231 193 52 17 chr5 120195178 120195236 -32342023 - RMER16 LTR ERVK -473 60 1 6 1502 234 156 0 0 chr5 120195612 120195657 -32341602 + T-rich Low_complexity Low_complexity 1 45 0 6 1502 306 0 0 0 chr5 120195900 120195934 -32341325 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1502 450 0 0 0 chr5 120196023 120196073 -32341186 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1502 451 176 360 67 chr5 120196240 120196404 -32340855 + ID_B1 SINE B4 1 212 -12 6 1502 928 92 274 0 chr5 120196577 120196730 -32340529 - B2_Mm2 SINE B2 0 195 1 6 1502 347 0 0 23 chr5 120196871 120196915 -32340344 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1502 875 200 13 6 chr5 120197080 120197236 -32340023 + B3 SINE B2 4 160 -56 6 1502 262 309 95 0 chr5 120197316 120197400 -32339859 - B4A SINE B4 -169 123 32 6 1502 679 85 132 25 chr5 120197686 120197807 -32339452 - B1_Mus1 SINE Alu -9 139 6 6 1502 327 294 138 62 chr5 120197807 120197831 -32339428 - B4 SINE B4 -75 217 62 6 1502 1191 62 14 0 chr5 120197963 120198108 -32339151 - B1_Mus1 SINE Alu 0 148 2 6 1502 265 233 131 0 chr5 120199553 120199629 -32337630 - MIRc SINE MIR -97 179 85 6 1502 421 282 10 151 chr5 120199851 120200043 -32337216 + B4 SINE B4 127 291 -1 6 1502 247 330 18 9 chr5 120200058 120200168 -32337091 + PB1D10 SINE Alu 3 113 -4 6 1502 238 79 77 26 chr5 120200186 120200264 -32336995 + (TA)n Simple_repeat Simple_repeat 2 83 0 6 1502 231 36 0 0 chr5 120200311 120200339 -32336920 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1502 474 341 35 12 chr5 120200360 120200529 -32336730 + B4A SINE B4 1 173 -119 6 1502 1939 191 30 3 chr5 120200612 120200975 -32336284 - RLTR14 LTR ERV1 0 382 10 6 1502 320 283 109 61 chr5 120201172 120201522 -32335737 - ORR1D1 LTR MaLR 0 379 1 6 1502 1319 85 26 5 chr5 120201543 120201732 -32335527 + B2_Mm2 SINE B2 2 194 -1 6 1502 295 206 261 0 chr5 120202135 120202227 -32335032 + B4A SINE B4 2 117 -175 6 1502 385 133 13 0 chr5 120202306 120202366 -32334893 - B2_Mm2 SINE B2 -83 115 50 6 1502 1120 69 7 0 chr5 120202383 120202527 -32334732 - B2_Mm1t SINE B2 -14 179 35 6 1502 214 310 14 14 chr5 120202570 120202642 -32334617 + (CA)n Simple_repeat Simple_repeat 1 72 0 6 1502 324 70 0 0 chr5 120203444 120203487 -32333772 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 6 1502 1241 86 11 22 chr5 120203506 120203535 -32333724 - B2_Mm1a SINE B2 -5 188 160 6 1502 426 20 0 0 chr5 120203535 120203586 -32333673 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 6 1502 1241 86 11 22 chr5 120203586 120203735 -32333524 - B2_Mm1a SINE B2 -34 159 12 6 1502 989 178 45 10 chr5 120203750 120203949 -32333310 - B3 SINE B2 0 216 11 6 1502 555 29 0 0 chr5 120204306 120204375 -32332884 + (TTCC)n Simple_repeat Simple_repeat 1 69 0 6 1502 207 0 0 0 chr5 120204375 120204398 -32332861 + (CCCCCT)n Simple_repeat Simple_repeat 6 28 0 6 1502 459 148 0 0 chr5 120204395 120204447 -32332812 + (TTTC)n Simple_repeat Simple_repeat 2 53 0 6 1502 1014 9 0 0 chr5 120204447 120204562 -32332697 + (TTCCC)n Simple_repeat Simple_repeat 2 116 0 6 1502 459 148 0 0 chr5 120204562 120204590 -32332669 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 6 1502 211 295 119 37 chr5 120204878 120204987 -32332272 + B1F SINE Alu 32 149 0 6 1502 258 184 13 26 chr5 120205018 120205096 -32332163 + GA-rich Low_complexity Low_complexity 2 78 0 6 1502 1523 95 14 5 chr5 120205372 120205593 -32331666 + L1_Mus3 LINE L1 6409 6631 -7 6 1502 216 0 0 0 chr5 120205757 120205781 -32331478 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1502 195 216 78 0 chr5 120206409 120206460 -32330799 + MIR3 SINE MIR 111 165 -43 6 1502 459 101 0 0 chr5 120206592 120206671 -32330588 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 6 1502 443 276 39 130 chr5 120206674 120206928 -32330331 - B4A SINE B4 -4 288 58 6 1502 534 297 78 19 chr5 120206895 120207101 -32330158 - B4A SINE B4 -61 231 14 6 1502 1314 198 120 65 chr5 120207102 120207453 -32329806 + ORR1D2 LTR MaLR 1 370 0 6 1502 969 302 4 7 chr5 120207554 120207834 -32329425 - B4 SINE B4 -13 279 1 6 1502 245 242 15 29 chr5 120208038 120208106 -32329153 + L2b LINE L2 3024 3090 -285 6 1502 352 290 72 18 chr5 120208256 120208433 -32328826 + L1M5 LINE L1 5447 5630 -554 6 1502 315 263 65 48 chr5 120208487 120208611 -32328648 + B1_Mus1 SINE Alu 2 127 -21 6 1502 499 292 33 45 chr5 120208614 120208858 -32328401 + L1M2 LINE L1 4159 4399 -1744 6 1502 266 318 38 0 chr5 120208863 120208995 -32328264 + G-rich Low_complexity Low_complexity 2 138 0 6 1502 854 211 43 11 chr5 120209000 120209187 -32328072 + B3A SINE B2 6 198 0 6 1502 338 304 18 18 chr5 120209190 120209304 -32327955 + L1M2 LINE L1 4395 4508 -1635 6 1502 1200 90 0 0 chr5 120209316 120209472 -32327787 + B2_Mm2 SINE B2 2 157 -38 6 1502 279 0 0 0 chr5 120209472 120209503 -32327756 + (TAA)n Simple_repeat Simple_repeat 3 33 0 6 1502 838 336 52 62 chr5 120209505 120210034 -32327225 + L1M2 LINE L1 4523 5065 -1078 6 1502 754 191 77 66 chr5 120210034 120210230 -32327029 + B3A SINE B2 1 198 0 6 1502 838 336 52 62 chr5 120210230 120210418 -32326841 + L1M2 LINE L1 5066 5241 -902 6 1502 1318 214 142 15 chr5 120210418 120210750 -32326509 - ORR1D1 LTR MaLR 0 374 1 6 1502 838 336 52 62 chr5 120210750 120210820 -32326439 + L1M2 LINE L1 5242 5303 -840 6 1502 192 152 0 0 chr5 120210949 120210982 -32326277 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 6 1502 281 224 56 9 chr5 120210983 120211091 -32326168 + (CATAT)n Simple_repeat Simple_repeat 2 114 0 6 1502 616 83 0 20 chr5 120211094 120211192 -32326067 + (TA)n Simple_repeat Simple_repeat 2 97 0 6 1502 737 194 43 7 chr5 120211204 120211344 -32325915 - B2_Mm2 SINE B2 -49 146 2 6 1502 1198 272 70 32 chr5 120211344 120211842 -32325417 + L1_Rod LINE L1 5331 5847 0 6 1502 273 146 0 0 chr5 120211871 120211919 -32325340 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1502 879 217 28 11 chr5 120212187 120212364 -32324895 + B3A SINE B2 2 181 -17 6 1502 1401 104 16 0 chr5 120212433 120212625 -32324634 - B2_Mm2 SINE B2 0 195 1 6 1502 790 198 47 12 chr5 120212625 120212643 -32324616 - B2_Mm1t SINE B2 -18 175 160 6 1502 333 0 0 0 chr5 120212643 120212680 -32324579 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 6 1502 967 114 7 2 chr5 120212680 120212830 -32324429 - B2_Mm2 SINE B2 -34 159 1 6 1502 1242 34 0 20 chr5 120212901 120213051 -32324208 + B1_Mus1 SINE Alu 2 148 0 6 1502 572 228 78 32 chr5 120213090 120213244 -32324015 + B4A SINE B4 126 286 -6 6 1502 726 191 22 22 chr5 120214162 120214296 -32322963 - B1_Mur1 SINE Alu -13 136 3 6 1502 477 0 0 0 chr5 120214416 120214469 -32322790 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1502 306 73 0 0 chr5 120214469 120214509 -32322750 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1502 730 211 35 21 chr5 120214670 120214815 -32322444 - B1_Mur1 SINE Alu 0 149 3 6 1502 438 269 25 138 chr5 120214675 120214878 -32322381 - ID_B1 SINE B4 -2 222 43 6 1502 245 295 37 4 chr5 120215137 120215268 -32321991 - L1_Rod LINE L1 -459 5841 5684 6 1502 1229 119 0 6 chr5 120215403 120215580 -32321679 + B2_Mm2 SINE B2 2 177 -18 6 1502 214 255 19 38 chr5 120215624 120215677 -32321582 + RSINE1 SINE B4 3 54 -111 6 1502 459 379 0 0 chr5 120215840 120216014 -32321245 + G-rich Low_complexity Low_complexity 3 176 0 6 1502 431 391 0 0 chr5 120216056 120216230 -32321029 + G-rich Low_complexity Low_complexity 3 176 0 6 1502 652 251 32 165 chr5 120217103 120217351 -32319908 + B3A SINE B2 1 215 -1 6 1502 1624 32 5 0 chr5 120218669 120218858 -32318401 + B2_Mm1t SINE B2 1 190 -3 6 1502 906 278 31 12 chr5 120218864 120219122 -32318137 + B4 SINE B4 12 274 -18 6 1502 468 0 0 0 chr5 120219129 120219181 -32318078 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1502 1134 126 5 49 chr5 120219322 120219506 -32317753 - B2_Mm2 SINE B2 -19 176 1 6 1502 1337 90 11 0 chr5 120219756 120219933 -32317326 + B2_Mm1t SINE B2 1 179 -14 6 1502 320 233 41 0 chr5 120219939 120220012 -32317247 + B2_Mm2 SINE B2 29 104 -91 6 1502 1022 144 0 6 chr5 120220062 120220243 -32317016 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1502 523 214 31 0 chr5 120221395 120221493 -32315766 - B1F SINE Alu -1 148 48 7 1502 231 208 0 54 chr5 120221447 120221503 -32315756 - 4.5SRNA scRNA scRNA -6 88 36 7 1502 763 137 8 8 chr5 120221503 120221768 -32315491 + (TCTCTG)n Simple_repeat Simple_repeat 1 265 0 7 1502 1113 178 15 39 chr5 120221838 120222043 -32315216 + B3 SINE B2 1 200 -16 7 1502 33 20 0 20 chr5 120222044 120222066 -32315193 + AT_rich Low_complexity Low_complexity 1 22 0 7 1502 1168 68 7 0 chr5 120222066 120222212 -32315047 + B1_Mus2 SINE Alu 1 147 0 7 1502 33 20 0 20 chr5 120222212 120222240 -32315019 + AT_rich Low_complexity Low_complexity 1 28 0 7 1502 1123 84 8 4 chr5 120222507 120222745 -32314514 + (TCCC)n Simple_repeat Simple_repeat 1 238 0 7 1502 180 111 0 0 chr5 120222857 120222884 -32314375 + (GAA)n Simple_repeat Simple_repeat 2 28 0 7 1502 200 292 15 30 chr5 120223618 120223685 -32313574 + GA-rich Low_complexity Low_complexity 4 69 0 7 1502 975 254 55 55 chr5 120223759 120224050 -32313209 + B4A SINE B4 2 292 0 7 1502 1039 180 85 76 chr5 120224508 120224582 -32312677 + URR1B DNA MER1_type 1 93 -132 7 1502 1350 66 66 0 chr5 120224582 120224763 -32312496 + B2_Mm2 SINE B2 1 193 -2 7 1502 1039 180 85 76 chr5 120224763 120224911 -32312348 + URR1B DNA MER1_type 94 225 0 7 1502 499 293 0 0 chr5 120225123 120225239 -32312020 - PB1D10 SINE Alu -1 116 1 7 1502 215 433 0 22 chr5 120225248 120225432 -32311827 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1502 748 232 108 191 chr5 120225467 120225655 -32311604 - B4 SINE B4 -2 290 88 7 1502 1035 152 0 0 chr5 120225655 120225833 -32311426 + CT-rich Low_complexity Low_complexity 1 178 0 7 1502 748 232 108 191 chr5 120225833 120225958 -32311301 - B4 SINE B4 -205 87 3 7 1502 757 292 73 25 chr5 120226781 120227055 -32310204 + B4 SINE B4 3 289 -3 7 1502 369 327 9 9 chr5 120227054 120227165 -32310094 + ID_B1 SINE B4 66 176 -48 7 1502 531 232 0 0 chr5 120227083 120227178 -32310081 + PB1D10 SINE Alu 14 108 -9 7 1502 202 279 82 0 chr5 120227344 120227405 -32309854 - MIR SINE MIR -131 131 66 7 1502 346 298 9 35 chr5 120227931 120228077 -32309182 + MER91B DNA Tip100 1 206 -3318 7 1502 832 179 0 20 chr5 120228660 120228673 -32308586 - B1_Mur2 SINE Alu 0 149 137 7 1502 270 0 0 0 chr5 120228673 120228703 -32308556 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 7 1502 832 179 0 20 chr5 120228703 120228837 -32308422 - B1_Mur2 SINE Alu -13 136 5 7 1502 303 310 46 15 chr5 120229021 120229152 -32308107 + MIRb SINE MIR 26 160 -108 7 1502 270 292 0 30 chr5 120229504 120229603 -32307656 + GA-rich Low_complexity Low_complexity 2 97 0 7 1502 654 235 0 0 chr5 120231124 120231345 -32305914 + (CA)n Simple_repeat Simple_repeat 1 221 0 7 1502 762 153 0 0 chr5 120231974 120232085 -32305174 + B3 SINE B2 1 111 -105 7 1502 832 240 86 13 chr5 120232061 120232293 -32304966 + B4A SINE B4 40 288 -4 7 1502 745 201 0 8 chr5 120232326 120232694 -32304565 + (CA)n Simple_repeat Simple_repeat 1 364 0 7 1502 465 281 50 35 chr5 120232790 120232971 -32304288 + ORR1E LTR MaLR 46 223 -147 7 1502 253 256 23 93 chr5 120233044 120233173 -32304086 - L1MA8 LINE L1 -54 6237 6118 7 1502 1099 102 6 11 chr5 120233253 120233431 -32303828 + (TCTCC)n Simple_repeat Simple_repeat 1 177 0 7 1502 311 311 119 64 chr5 120233588 120233866 -32303393 - MLT1G LTR MaLR -169 386 106 7 1502 224 291 0 0 chr5 120234631 120234686 -32302573 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1502 747 329 24 45 chr5 120234691 120234978 -32302281 - B4A SINE B4 -7 285 5 7 1502 700 321 72 93 chr5 120235014 120235240 -32302019 - Lx7 LINE L1 -6 7467 7243 7 1502 1319 97 17 0 chr5 120235240 120235416 -32301843 + B2_Mm2 SINE B2 3 181 -14 7 1502 1352 102 21 0 chr5 120235420 120235606 -32301653 + B2_Mm2 SINE B2 1 190 -5 7 1502 814 306 53 63 chr5 120235606 120236032 -32301227 - Lx7 LINE L1 -231 7242 6813 7 1502 1185 169 43 0 chr5 120236093 120236300 -32300959 - B3 SINE B2 0 216 1 7 1502 265 176 14 29 chr5 120237768 120237838 -32299421 + CT-rich Low_complexity Low_complexity 2 70 0 7 1502 627 119 30 42 chr5 120237864 120238030 -32299229 + CT-rich Low_complexity Low_complexity 2 165 0 7 1502 645 170 22 28 chr5 120238067 120238248 -32299011 + CT-rich Low_complexity Low_complexity 1 180 0 7 1502 22 0 0 0 chr5 120238488 120238510 -32298749 + AT_rich Low_complexity Low_complexity 1 22 0 7 1502 872 238 0 6 chr5 120238525 120238690 -32298569 - RSINE1 SINE B4 0 165 2 7 1502 958 308 83 21 chr5 120238721 120239059 -32298200 + MTEb LTR MaLR 6 364 -15 7 1502 935 235 39 0 chr5 120239890 120240094 -32297165 - B3 SINE B2 0 216 5 7 1502 1156 200 5 32 chr5 120240143 120240360 -32296899 + B3 SINE B2 1 211 -5 7 1502 22 0 0 0 chr5 120240362 120240384 -32296875 + AT_rich Low_complexity Low_complexity 1 22 0 7 1502 284 236 11 0 chr5 120240428 120240517 -32296742 + (CA)n Simple_repeat Simple_repeat 1 90 0 7 1502 557 243 18 0 chr5 120240520 120240631 -32296628 + ID_B1 SINE B4 98 210 -14 7 1502 857 247 40 0 chr5 120240637 120240864 -32296395 + RCHARR1 DNA MER1_type 637 872 -102 7 1502 245 209 30 30 chr5 120241059 120241227 -32296032 + GA-rich Low_complexity Low_complexity 2 169 0 7 1502 314 354 46 62 chr5 120241227 120241486 -32295773 + ORR1E LTR MaLR 99 353 -6 7 1502 393 225 247 19 chr5 120242226 120242380 -32294879 + ORR1E LTR MaLR 1 189 -170 7 1502 498 112 5 82 chr5 120242384 120242578 -32294681 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 7 1502 428 121 32 65 chr5 120242609 120242794 -32294465 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 7 1502 276 230 0 29 chr5 120242795 120242898 -32294361 + CT-rich Low_complexity Low_complexity 1 100 0 7 1502 555 16 0 0 chr5 120243020 120243084 -32294175 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1502 282 333 56 31 chr5 120243146 120243341 -32293918 - L1M5 LINE L1 -292 5832 5633 7 1502 309 291 0 55 chr5 120243549 120243625 -32293634 + G-rich Low_complexity Low_complexity 1 71 0 7 1502 230 95 24 0 chr5 120243625 120243667 -32293592 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 7 1502 309 291 0 55 chr5 120243667 120243699 -32293560 + G-rich Low_complexity Low_complexity 72 103 0 7 1502 306 216 0 0 chr5 120244454 120244528 -32292731 + CT-rich Low_complexity Low_complexity 6 79 0 7 1502 192 97 0 0 chr5 120244928 120244959 -32292300 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1502 527 229 19 77 chr5 120245221 120245377 -32291882 + HAL1-2a_MD LINE L1 2345 2491 -533 7 1502 534 31 0 0 chr5 120245738 120245802 -32291457 + (GA)n Simple_repeat Simple_repeat 2 65 0 7 1502 270 0 0 0 chr5 120248897 120248927 -32288332 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1502 39 0 0 0 chr5 120251783 120251822 -32285437 + AT_rich Low_complexity Low_complexity 1 39 0 7 1502 218 222 133 100 chr5 120252453 120252523 -32284736 + MIR SINE MIR 28 102 -160 7 1502 1427 114 22 43 chr5 120252523 120252753 -32284506 + URR1B DNA MER1_type 1 225 0 7 1502 218 222 133 100 chr5 120252753 120252772 -32284487 + MIR SINE MIR 103 120 -142 7 1502 226 286 0 41 chr5 120253068 120253141 -32284118 + MIRm SINE MIR 56 125 -151 7 1502 252 0 0 0 chr5 120254309 120254337 -32282922 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1502 276 30 0 0 chr5 120254337 120254369 -32282890 + (CA)n Simple_repeat Simple_repeat 1 33 0 7 1502 480 35 0 0 chr5 120257015 120257073 -32280186 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1502 282 116 0 0 chr5 120257239 120257282 -32279977 + (CATA)n Simple_repeat Simple_repeat 2 44 0 7 1502 593 249 160 0 chr5 120259000 120259169 -32278090 + B3A SINE B2 1 196 -2 7 1502 919 154 219 0 chr5 120259347 120259516 -32277743 + B3 SINE B2 5 210 -6 7 1502 225 0 0 0 chr5 120260033 120260058 -32277201 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1502 291 85 0 0 chr5 120260058 120260105 -32277154 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 1502 562 276 24 0 chr5 120260106 120260229 -32277030 - RSINE1 SINE B4 -29 136 11 7 1502 215 284 48 24 chr5 120260241 120260324 -32276935 + MIR SINE MIR 69 153 -55 7 1502 393 22 0 0 chr5 120260844 120260890 -32276369 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1502 23 33 0 0 chr5 120260897 120260927 -32276332 + AT_rich Low_complexity Low_complexity 1 30 0 7 1502 717 163 38 23 chr5 120261859 120261991 -32275268 - B1_Mur3 SINE Alu -2 147 14 7 1502 297 247 136 57 chr5 120261884 120262060 -32275199 - MT2B LTR ERVL -323 278 89 7 1502 294 246 15 44 chr5 120262042 120262110 -32275149 - B1F1 SINE Alu -83 66 1 7 1502 241 277 0 58 chr5 120262048 120262117 -32275142 - B4A SINE B4 -148 144 80 7 1502 915 216 19 29 chr5 120262150 120262360 -32274899 + B3 SINE B2 1 208 -8 7 1502 512 248 66 58 chr5 120262498 120262635 -32274624 - ID_B1 SINE B4 0 224 87 7 1502 498 168 26 0 chr5 120262765 120262878 -32274381 + (TA)n Simple_repeat Simple_repeat 1 116 0 7 1502 390 180 37 74 chr5 120263185 120263293 -32273966 + ZP3AR Satellite Satellite 44 147 -65 7 1502 1674 16 16 0 chr5 120264089 120264278 -32272981 + B2_Mm1a SINE B2 1 192 -1 7 1502 758 260 78 5 chr5 120264425 120264630 -32272629 + ID_B1 SINE B4 1 220 -4 7 1502 363 160 0 0 chr5 120264631 120264725 -32272534 + GA-rich Low_complexity Low_complexity 1 94 0 7 1502 204 67 0 0 chr5 120264761 120264791 -32272468 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 1502 324 333 101 29 chr5 120264801 120264940 -32272319 + RSINE1 SINE B4 15 163 -2 7 1502 27 0 0 0 chr5 120264946 120264973 -32272286 + AT_rich Low_complexity Low_complexity 1 27 0 7 1502 238 278 48 53 chr5 120265168 120265291 -32271968 + B4 SINE B4 43 165 0 7 1502 674 186 197 6 chr5 120265346 120265524 -32271735 - B3 SINE B2 0 216 5 7 1502 232 311 0 0 chr5 120265770 120265844 -32271415 - L1MC4 LINE L1 -467 7575 7502 7 1502 660 94 0 0 chr5 120265888 120265994 -32271265 + (TCTA)n Simple_repeat Simple_repeat 1 106 0 7 1502 213 266 15 59 chr5 120265995 120266063 -32271196 - PB1D7 SINE Alu -11 109 45 8 1502 422 275 159 18 chr5 120266321 120266491 -32270768 + B3A SINE B2 5 198 0 8 1502 1239 72 0 0 chr5 120266746 120266913 -32270346 + (TCC)n Simple_repeat Simple_repeat 3 169 0 8 1502 773 197 20 7 chr5 120266913 120267051 -32270208 - B1_Mur4 SINE Alu -9 141 1 8 1502 210 254 16 33 chr5 120267108 120267169 -32270090 - BC1_Mm scRNA scRNA -54 98 39 8 1502 287 280 99 86 chr5 120267338 120267662 -32269597 + RMER12 LTR ERVK 690 1017 -305 8 1502 807 292 79 34 chr5 120267587 120267853 -32269406 - B4 SINE B4 0 292 15 8 1502 1105 75 0 0 chr5 120268985 120269119 -32268140 + B1_Mus1 SINE Alu 2 135 -13 8 1502 489 34 0 0 chr5 120269120 120269179 -32268080 + (TAAAA)n Simple_repeat Simple_repeat 3 61 0 8 1502 791 234 32 11 chr5 120269189 120269375 -32267884 + B3A SINE B2 2 191 -7 8 1502 369 260 34 25 chr5 120269403 120269501 -32267758 + PB1D10 SINE Alu 15 127 0 8 1502 226 265 132 44 chr5 120269633 120269777 -32267482 - MIRb SINE MIR -111 157 7 8 1502 382 213 26 6 chr5 120269937 120270093 -32267166 + (TG)n Simple_repeat Simple_repeat 1 159 0 8 1502 430 333 7 14 chr5 120270116 120270262 -32266997 - RSINE1 SINE B4 0 165 21 8 1502 644 262 109 27 chr5 120270401 120270585 -32266674 + ID_B1 SINE B4 13 211 -13 8 1502 336 286 23 92 chr5 120270479 120270610 -32266649 + B1F SINE Alu 6 127 -22 8 1502 325 302 71 104 chr5 120270754 120270965 -32266294 + MLT1C LTR MaLR 65 268 -199 8 1502 640 205 29 43 chr5 120271732 120271870 -32265389 - B1F SINE Alu -1 148 13 8 1502 262 256 0 37 chr5 120271916 120271997 -32265262 - ID4_ SINE ID -1 82 5 8 1502 189 0 0 0 chr5 120272706 120272727 -32264532 + (GA)n Simple_repeat Simple_repeat 2 22 0 8 1502 183 183 141 61 chr5 120274439 120274538 -32262721 - L2 LINE L2 -1061 2358 2252 8 1502 716 235 19 32 chr5 120275632 120275786 -32261473 + RSINE1 SINE B4 8 159 -6 8 1502 274 302 53 80 chr5 120275786 120275818 -32261441 + B3A SINE B2 7 187 -11 8 1502 24 0 0 0 chr5 120276066 120276090 -32261169 + AT_rich Low_complexity Low_complexity 1 24 0 8 1502 644 129 3 24 chr5 120276163 120276283 -32260976 + B1_Mus1 SINE Alu 2 118 -2 8 1502 543 31 0 0 chr5 120277573 120277638 -32259621 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1502 578 190 25 8 chr5 120277749 120277871 -32259388 + ID_B1 SINE B4 99 222 -2 8 1502 303 343 67 40 chr5 120277872 120278021 -32259238 + HAL1b LINE L1 534 686 -1323 8 1502 183 186 0 0 chr5 120280872 120280915 -32256344 + (TAA)n Simple_repeat Simple_repeat 2 44 0 8 1502 549 0 0 0 chr5 120283627 120283688 -32253571 + (TC)n Simple_repeat Simple_repeat 1 61 0 8 1502 354 61 0 0 chr5 120284374 120284423 -32252836 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 8 1502 240 340 28 28 chr5 120284423 120284529 -32252730 - LTR78 LTR ERV1 -345 959 854 8 1502 459 0 0 0 chr5 120284634 120284685 -32252574 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1502 344 22 22 0 chr5 120284685 120284729 -32252530 + (GA)n Simple_repeat Simple_repeat 2 47 0 8 1502 447 19 0 0 chr5 120284785 120284837 -32252422 + (GA)n Simple_repeat Simple_repeat 2 53 0 8 1502 423 0 0 0 chr5 120286263 120286310 -32250949 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 8 1502 661 233 0 43 chr5 120288076 120288215 -32249044 + B1F SINE Alu 8 140 -9 8 1502 216 0 0 0 chr5 120288847 120288871 -32248388 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1502 432 0 0 0 chr5 120290983 120291031 -32246228 + (TAA)n Simple_repeat Simple_repeat 2 49 0 8 1502 194 322 0 17 chr5 120291084 120291144 -32246115 - MIRm SINE MIR -112 164 106 8 1502 189 0 0 0 chr5 120291341 120291362 -32245897 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1502 384 22 0 0 chr5 120293678 120293723 -32243536 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1502 465 19 0 0 chr5 120294067 120294121 -32243138 + (TAA)n Simple_repeat Simple_repeat 2 55 0 8 1502 283 317 0 24 chr5 120296320 120296404 -32240855 - ID4_ SINE ID -1 82 1 8 1502 302 45 0 22 chr5 120296432 120296477 -32240782 + (TG)n Simple_repeat Simple_repeat 1 44 0 8 1502 643 285 0 27 chr5 120296486 120296634 -32240625 - RSINE1 SINE B4 -21 144 1 8 1502 239 81 81 0 chr5 120297179 120297216 -32240043 + MIR SINE MIR 116 155 -113 8 1502 348 83 0 0 chr5 120297216 120297264 -32239995 + (CAT)n Simple_repeat Simple_repeat 1 48 0 8 1502 239 122 17 183 chr5 120297264 120297291 -32239968 + MIR SINE MIR 145 168 -94 8 1502 464 194 21 7 chr5 120298613 120298753 -32238506 + (TG)n Simple_repeat Simple_repeat 2 143 0 8 1502 365 298 9 17 chr5 120298753 120298869 -32238390 + (TATG)n Simple_repeat Simple_repeat 1 115 0 8 1502 490 216 23 6 chr5 120298871 120299048 -32238211 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1502 543 304 47 0 chr5 120299121 120299269 -32237990 - RSINE1 SINE B4 -10 155 1 8 1502 650 212 211 5 chr5 120299269 120299455 -32237804 - B4A SINE B4 -64 228 2 8 1502 289 211 196 21 chr5 120299677 120299774 -32237485 - PB1D7 SINE Alu -6 114 1 8 1502 226 86 0 0 chr5 120299864 120299899 -32237360 - B3 SINE B2 -17 199 165 8 1502 975 230 21 0 chr5 120299899 120300086 -32237173 - B3 SINE B2 -17 199 9 8 1502 916 243 18 18 chr5 120300347 120300565 -32236694 - ID_B1 SINE B4 -5 219 2 8 1502 483 63 0 0 chr5 120300573 120300636 -32236623 + (CTA)n Simple_repeat Simple_repeat 3 65 0 8 1502 489 244 0 0 chr5 120300639 120300725 -32236534 - PB1D10 SINE Alu -15 102 17 8 1502 245 264 54 54 chr5 120301179 120301271 -32235988 + PB1D10 SINE Alu 4 95 -22 8 1502 23 0 0 0 chr5 120301479 120301502 -32235757 + AT_rich Low_complexity Low_complexity 1 23 0 8 1502 418 324 103 0 chr5 120301539 120301675 -32235584 - B3A SINE B2 -24 174 25 8 1502 279 0 0 0 chr5 120301706 120301737 -32235522 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1502 467 188 10 20 chr5 120301754 120301852 -32235407 - RSINE1 SINE B4 -41 124 28 8 1502 458 194 165 0 chr5 120302217 120302320 -32234939 + PB1D7 SINE Alu 1 120 0 8 1502 542 319 77 17 chr5 120302339 120302572 -32234687 + B4A SINE B4 44 290 -2 8 1502 1220 243 14 27 chr5 120303738 120303766 -32233493 - B4A SINE B4 0 292 270 8 1502 405 0 0 0 chr5 120303766 120303811 -32233448 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 1502 207 0 0 0 chr5 120303811 120303833 -32233426 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1502 1220 243 14 27 chr5 120303833 120304099 -32233160 - B4A SINE B4 -23 269 2 8 1502 689 214 3 3 chr5 120304671 120305012 -32232247 + (CA)n Simple_repeat Simple_repeat 1 341 0 8 1502 249 182 0 0 chr5 120305059 120305114 -32232145 + CT-rich Low_complexity Low_complexity 2 56 0 8 1502 1129 70 0 7 chr5 120305322 120305466 -32231793 + B1_Mus1 SINE Alu 4 146 -2 8 1502 594 205 9 9 chr5 120305483 120305596 -32231663 - B3 SINE B2 -103 113 1 8 1502 234 276 38 50 chr5 120305974 120306054 -32231205 - ID4 SINE ID 0 83 5 8 1502 211 290 0 31 chr5 120306606 120306670 -32230589 + GA-rich Low_complexity Low_complexity 2 63 0 8 1502 209 338 89 37 chr5 120306838 120306973 -32230286 + MIR3 SINE MIR 4 145 -63 8 1502 627 14 0 0 chr5 120307395 120307467 -32229792 + (TC)n Simple_repeat Simple_repeat 1 72 0 8 1502 21 0 0 0 chr5 120307570 120307591 -32229668 + AT_rich Low_complexity Low_complexity 1 21 0 8 1502 222 62 0 0 chr5 120307672 120307704 -32229555 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 8 1502 963 113 30 0 chr5 120307856 120308024 -32229235 + (GGAA)n Simple_repeat Simple_repeat 1 173 0 8 1502 195 221 27 81 chr5 120308500 120308574 -32228685 - MIR3 SINE MIR -28 180 111 8 1502 1023 170 143 5 chr5 120309093 120309282 -32227977 - B3 SINE B2 -1 215 1 8 1502 423 0 0 0 chr5 120310054 120310101 -32227158 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1502 354 194 0 15 chr5 120310420 120310488 -32226771 - ID4 SINE ID -13 70 4 8 1502 336 102 0 0 chr5 120310521 120310570 -32226689 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1502 393 241 92 9 chr5 120310575 120310684 -32226575 - RSINE1 SINE B4 -47 118 1 8 1502 412 194 48 97 chr5 120311073 120311176 -32226083 + MT2B LTR ERVL 160 257 -344 8 1502 857 112 16 8 chr5 120311095 120311211 -32226048 + B1_Mur2 SINE Alu 22 139 -10 8 1502 468 0 0 0 chr5 120311211 120311263 -32225996 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1502 230 269 84 106 chr5 120311272 120311324 -32225935 - YREP_Mm Unknown Unknown -1626 186 123 8 1502 216 299 15 0 chr5 120311945 120312012 -32225247 + CT-rich Low_complexity Low_complexity 2 69 0 8 1502 203 105 53 0 chr5 120312018 120312056 -32225203 + C-rich Low_complexity Low_complexity 5 44 0 8 1502 2303 267 51 12 chr5 120312157 120312905 -32224354 - L1MA9 LINE L1 -248 6064 5286 8 1502 690 203 0 0 chr5 120312974 120313127 -32224132 + (TA)n Simple_repeat Simple_repeat 1 153 0 8 1502 225 94 0 0 chr5 120313148 120313180 -32224079 + (CCA)n Simple_repeat Simple_repeat 1 32 0 8 1502 407 324 50 36 chr5 120313604 120313905 -32223354 - L1ME2z LINE L1 -125 6319 6015 8 1502 783 197 0 0 chr5 120313919 120314097 -32223162 + (TG)n Simple_repeat Simple_repeat 2 179 0 8 1502 241 139 47 0 chr5 120314098 120314141 -32223118 + (TATG)n Simple_repeat Simple_repeat 2 46 0 8 1502 563 246 6 0 chr5 120314142 120314321 -32222938 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1502 657 226 0 0 chr5 120314345 120314522 -32222737 + (TG)n Simple_repeat Simple_repeat 1 177 0 8 1502 707 278 183 20 chr5 120314528 120314774 -32222485 - B4A SINE B4 0 292 7 8 1502 397 284 10 21 chr5 120315257 120315354 -32221905 + PB1D10 SINE Alu 5 100 -17 8 1502 582 276 20 0 chr5 120315378 120315530 -32221729 + ID_B1 SINE B4 1 155 -69 9 1502 846 256 5 68 chr5 120315535 120315694 -32221565 + B3 SINE B2 7 165 -51 9 1502 708 12 0 0 chr5 120315694 120315775 -32221484 + (CA)n Simple_repeat Simple_repeat 2 82 0 9 1502 846 256 5 68 chr5 120315775 120315837 -32221422 + B3 SINE B2 166 214 -2 9 1502 770 202 112 63 chr5 120315843 120315969 -32221290 + B3 SINE B2 1 145 -71 9 1502 414 0 0 0 chr5 120315969 120316015 -32221244 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 1502 234 0 0 0 chr5 120316015 120316040 -32221219 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1502 770 202 112 63 chr5 120316040 120316118 -32221141 + B3 SINE B2 146 215 -1 9 1502 295 204 0 0 chr5 120316130 120316184 -32221075 + ID_B1 SINE B4 142 195 -29 9 1502 202 235 86 29 chr5 120316257 120316327 -32220932 - MIR SINE MIR -81 181 108 9 1502 449 281 28 39 chr5 120317520 120317698 -32219561 - HAL1-2a_MD LINE L1 -503 2521 2346 9 1502 414 0 0 0 chr5 120317913 120317959 -32219300 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 1502 394 278 22 29 chr5 120318832 120318969 -32218290 + MIR SINE MIR 49 184 -78 9 1502 252 334 19 14 chr5 120319021 120319117 -32218142 - ID4_ SINE ID -49 103 3 9 1502 354 257 0 0 chr5 120319138 120319208 -32218051 - ID4_ SINE ID -5 78 9 9 1502 483 18 0 0 chr5 120319209 120319265 -32217994 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 9 1502 400 233 0 0 chr5 120319292 120319365 -32217894 - ID4 SINE ID -10 73 1 9 1502 345 285 95 0 chr5 120319618 120319755 -32217504 - Charlie4a DNA MER1_type -5 503 354 9 1502 666 253 33 0 chr5 120319767 120319917 -32217342 - ID_B1 SINE B4 -66 158 4 9 1502 477 234 237 65 chr5 120320160 120320329 -32216930 - B3A SINE B2 0 198 1 9 1502 249 57 0 0 chr5 120320364 120320399 -32216860 + (GGA)n Simple_repeat Simple_repeat 2 36 0 9 1502 775 198 6 53 chr5 120320426 120320597 -32216662 - RSINE1 SINE B4 0 165 3 9 1502 571 191 5 38 chr5 120321706 120321891 -32215368 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 9 1502 576 204 23 17 chr5 120321869 120322215 -32215044 + (CATA)n Simple_repeat Simple_repeat 1 348 0 9 1502 278 141 13 53 chr5 120322216 120322291 -32214968 + (CA)n Simple_repeat Simple_repeat 2 73 0 9 1502 266 183 222 14 chr5 120322451 120322523 -32214736 - PB1D7 SINE Alu -1 119 33 9 1502 301 279 0 37 chr5 120323503 120323585 -32213674 - ID_B1 SINE B4 -1 223 145 9 1502 388 260 0 121 chr5 120323539 120323700 -32213559 - B1F SINE Alu -13 136 5 9 1502 600 14 0 0 chr5 120323935 120324004 -32213255 + (GA)n Simple_repeat Simple_repeat 1 69 0 9 1503 860 257 128 19 chr5 120324494 120324752 -32212507 + B4 SINE B4 1 286 -6 9 1503 423 0 0 0 chr5 120324763 120324810 -32212449 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1503 345 47 0 0 chr5 120325393 120325436 -32211823 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1503 432 342 6 45 chr5 120326122 120326278 -32210981 - RSINE1 SINE B4 0 165 16 9 1503 825 194 0 0 chr5 120326699 120326879 -32210380 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 9 1503 882 180 0 0 chr5 120326920 120327098 -32210161 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 9 1503 303 71 0 0 chr5 120328450 120328492 -32208767 + (TAA)n Simple_repeat Simple_repeat 1 42 0 9 1503 180 315 14 0 chr5 120329124 120329197 -32208062 + L2a LINE L2 3328 3401 -25 9 1503 747 188 21 21 chr5 120329523 120329830 -32207429 + CT-rich Low_complexity Low_complexity 1 307 0 9 1503 394 221 39 0 chr5 120330242 120330319 -32206940 + PB1D7 SINE Alu 33 112 -8 9 1503 468 0 0 0 chr5 120330480 120330532 -32206727 + (CA)n Simple_repeat Simple_repeat 2 53 0 9 1503 244 167 0 43 chr5 120331366 120331435 -32205824 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 9 1503 416 221 26 0 chr5 120331467 120331621 -32205638 + (TCCA)n Simple_repeat Simple_repeat 2 159 0 9 1503 632 177 17 6 chr5 120331640 120331816 -32205443 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 9 1503 335 305 82 34 chr5 120331943 120332089 -32205170 + MIR SINE MIR 66 218 -44 9 1503 360 0 0 0 chr5 120332108 120332148 -32205111 + (TC)n Simple_repeat Simple_repeat 2 41 0 9 1503 387 0 0 0 chr5 120332148 120332190 -32205069 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1503 865 273 10 5 chr5 120332297 120332492 -32204767 + ID_B1 SINE B4 8 203 -21 9 1503 513 121 0 0 chr5 120332498 120332581 -32204678 + (TGG)n Simple_repeat Simple_repeat 1 83 0 9 1503 226 308 60 53 chr5 120332602 120332774 -32204485 - MIRc SINE MIR -14 248 80 9 1503 450 0 0 0 chr5 120333525 120333575 -32203684 + (GA)n Simple_repeat Simple_repeat 1 50 0 9 1503 29 0 0 0 chr5 120333918 120333947 -32203312 + AT_rich Low_complexity Low_complexity 1 29 0 9 1503 309 51 0 0 chr5 120334622 120334661 -32202598 + (CCCCCA)n Simple_repeat Simple_repeat 3 41 0 9 1503 222 37 0 0 chr5 120334888 120334915 -32202344 + (TC)n Simple_repeat Simple_repeat 1 27 0 9 1503 190 136 45 0 chr5 120334945 120334989 -32202270 + CT-rich Low_complexity Low_complexity 3 48 0 9 1503 342 0 0 0 chr5 120335059 120335097 -32202162 + (TGAG)n Simple_repeat Simple_repeat 4 41 0 9 1503 396 0 0 0 chr5 120335279 120335323 -32201936 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 9 1503 189 0 0 0 chr5 120335608 120335629 -32201630 + (C)n Simple_repeat Simple_repeat 1 21 0 9 1503 290 252 104 89 chr5 120335739 120335874 -32201385 - ORR1E LTR MaLR -222 137 1 9 1503 362 158 39 67 chr5 120335882 120335992 -32201267 - B1_Mur1 SINE Alu -9 140 38 9 1503 272 200 0 44 chr5 120335935 120336003 -32201256 - 4.5SRNA scRNA scRNA -3 91 27 9 1503 1748 148 132 6 chr5 120336107 120336433 -32200826 - ORR1B2 LTR MaLR 0 367 1 9 1503 645 254 284 20 chr5 120336451 120336682 -32200577 + B4A SINE B4 1 292 0 9 1503 384 22 0 0 chr5 120336714 120336759 -32200500 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1503 266 73 24 0 chr5 120336882 120336923 -32200336 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 9 1503 887 172 13 7 chr5 120337390 120337542 -32199717 - RLTR26 LTR ERVK 0 642 490 9 1503 2694 158 35 12 chr5 120337530 120338019 -32199240 - RLTR26 LTR ERVK -98 544 1 9 1503 2634 58 0 58 chr5 120338205 120338552 -32198707 - ORR1A2 LTR MaLR 0 327 1 9 1503 1910 161 3 16 chr5 120339008 120339330 -32197929 + ORR1C1 LTR MaLR 59 376 -2 9 1503 435 262 3 13 chr5 120339404 120339711 -32197548 + (TG)n Simple_repeat Simple_repeat 1 303 0 9 1503 494 207 6 0 chr5 120340179 120340348 -32196911 + (CA)n Simple_repeat Simple_repeat 1 170 0 9 1503 214 271 0 27 chr5 120340365 120340634 -32196625 + (CA)n Simple_repeat Simple_repeat 1 261 0 9 1503 289 355 52 57 chr5 120340680 120340874 -32196385 + MIRb SINE MIR 52 244 -24 9 1503 360 280 107 24 chr5 120340999 120341204 -32196055 + RMER12 LTR ERVK 767 988 -334 9 1503 309 329 0 0 chr5 120341204 120341286 -32195973 + (TG)n Simple_repeat Simple_repeat 2 83 0 9 1503 458 299 47 0 chr5 120341406 120341533 -32195726 + B4A SINE B4 24 156 -136 9 1503 522 139 0 0 chr5 120342606 120342692 -32194567 + (TG)n Simple_repeat Simple_repeat 2 87 0 9 1503 372 232 0 0 chr5 120342695 120342764 -32194495 - ID4 SINE ID -13 70 2 9 1503 756 223 130 53 chr5 120342772 120342980 -32194279 - ID_B1 SINE B4 0 224 1 9 1503 261 286 95 0 chr5 120343138 120343222 -32194037 + PB1D9 SINE Alu 3 94 -26 9 1503 22 0 0 0 chr5 120343407 120343429 -32193830 + AT_rich Low_complexity Low_complexity 1 22 0 9 1503 805 254 10 58 chr5 120343504 120343709 -32193550 - B3A SINE B2 0 198 4 9 1503 308 312 65 92 chr5 120343758 120343987 -32193272 + MLT1G3 LTR MaLR 350 572 -23 9 1503 878 212 10 64 chr5 120344179 120344401 -32192858 + B3A SINE B2 2 216 0 9 1503 234 352 53 32 chr5 120344448 120344542 -32192717 - B1F SINE Alu -52 97 2 9 1503 785 276 56 94 chr5 120345436 120345724 -32191535 + B4 SINE B4 14 290 -2 9 1503 255 266 0 0 chr5 120345756 120345880 -32191379 + (CA)n Simple_repeat Simple_repeat 1 124 0 9 1503 501 244 0 0 chr5 120345914 120346090 -32191169 + (CA)n Simple_repeat Simple_repeat 1 176 0 9 1503 276 30 0 0 chr5 120346122 120346155 -32191104 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 9 1503 233 354 79 58 chr5 120346177 120346507 -32190752 - MER31A LTR ERV1 -48 437 101 9 1503 325 287 11 33 chr5 120346643 120346733 -32190526 + MIRb SINE MIR 86 173 -95 9 1503 587 237 5 9 chr5 120347352 120347578 -32189681 + GA-rich Low_complexity Low_complexity 1 224 0 9 1503 190 193 17 17 chr5 120347926 120347984 -32189275 + CT-rich Low_complexity Low_complexity 4 61 0 9 1503 396 288 37 29 chr5 120348052 120348188 -32189071 - MIR3 SINE MIR -5 203 67 9 1503 2136 98 3 69 chr5 120348480 120348830 -32188429 - IAPLTR1a_Mm LTR ERVK -10 327 1 9 1503 56280 10 7 1 chr5 120348830 120355288 -32181971 - IAPEz-int LTR ERVK 0 6481 3 9 1503 2137 108 3 67 chr5 120355289 120355647 -32181612 - IAPLTR1a_Mm LTR ERVK -2 335 1 9 1503 859 206 16 2 chr5 120355675 120356150 -32181109 + (TCCA)n Simple_repeat Simple_repeat 1 481 0 9 1503 428 295 102 23 chr5 120356247 120356420 -32180839 - LTR16A LTR ERVL 0 451 265 9 1503 441 334 104 98 chr5 120356420 120356839 -32180420 - MLT1E1A LTR MaLR 0 680 117 9 1503 818 257 94 77 chr5 120356839 120357126 -32180133 - B4 SINE B4 0 292 1 9 1503 437 333 104 104 chr5 120357126 120357225 -32180034 - MLT1E1A LTR MaLR -444 116 23 9 1503 501 354 60 48 chr5 120357234 120357486 -32179773 - LTR16A LTR ERVL -164 287 33 9 1503 200 233 14 0 chr5 120357761 120357834 -32179425 + (TGGA)n Simple_repeat Simple_repeat 4 77 0 9 1503 672 146 29 17 chr5 120357819 120357993 -32179266 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 9 1503 904 104 11 23 chr5 120358023 120358200 -32179059 + (TAGA)n Simple_repeat Simple_repeat 3 177 0 9 1503 300 235 59 0 chr5 120359504 120359572 -32177687 - HAL1 LINE L1 -1561 946 875 9 1503 563 184 22 0 chr5 120359592 120359709 -32177550 - PB1D7 SINE Alu 0 120 11 9 1503 259 330 100 0 chr5 120359628 120359728 -32177531 - B4A SINE B4 -112 180 71 9 1503 1301 252 87 34 chr5 120359925 120360340 -32176919 + Lx7 LINE L1 6987 7423 -273 9 1503 188 163 23 0 chr5 120360446 120360489 -32176770 + GA-rich Low_complexity Low_complexity 1 44 0 9 1503 1450 179 39 70 chr5 120360489 120360820 -32176439 - RLTR11A LTR ERVK 0 528 208 9 1503 1136 207 63 15 chr5 120360826 120361114 -32176145 - RLTR11A2 LTR ERVK -160 293 1 9 1503 795 321 60 39 chr5 120361132 120361595 -32175664 + L1MA4 LINE L1 5449 5921 -379 9 1503 252 292 129 26 chr5 120361680 120361796 -32175463 + MIRc SINE MIR 67 194 -74 1 1503 2614 56 16 3 chr5 120361926 120362249 -32175010 - ORR1A2 LTR MaLR 0 327 1 1 1503 387 294 25 61 chr5 120362350 120362513 -32174746 - B4A SINE B4 -16 276 120 1 1503 364 307 7 66 chr5 120362438 120362574 -32174685 + MLT1K LTR MaLR 181 308 -287 1 1503 839 61 9 0 chr5 120362810 120362924 -32174335 + (TCTA)n Simple_repeat Simple_repeat 2 116 0 1 1503 670 176 96 0 chr5 120362927 120363052 -32174207 - B1_Mur2 SINE Alu -8 141 5 1 1503 576 246 18 0 chr5 120363085 120363199 -32174060 - B4A SINE B4 -127 165 50 1 1503 189 0 0 0 chr5 120363328 120363349 -32173910 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1 1503 1271 61 0 0 chr5 120363361 120363509 -32173750 - B1_Mus1 SINE Alu 0 148 1 1 1503 22 0 0 0 chr5 120363538 120363560 -32173699 + AT_rich Low_complexity Low_complexity 1 22 0 1 1503 949 169 7 0 chr5 120363703 120363845 -32173414 - B1_Mur1 SINE Alu -6 143 1 1 1503 225 303 90 7 chr5 120363897 120364045 -32173214 - MIR SINE MIR -72 190 32 1 1503 464 191 12 5 chr5 120364093 120364181 -32173078 + B4A SINE B4 3 94 -71 1 1503 2579 106 67 3 chr5 120364739 120365126 -32172133 + MTC LTR MaLR 10 421 0 1 1503 419 299 0 0 chr5 120365790 120365907 -32171352 + PB1D10 SINE Alu 1 117 0 1 1503 329 274 104 43 chr5 120365926 120366090 -32171169 + HAL1-3A_ME LINE L1 2263 2436 -422 1 1503 773 190 27 3 chr5 120366092 120366396 -32170863 + GA-rich Low_complexity Low_complexity 1 311 0 1 1503 720 324 25 44 chr5 120367267 120367541 -32169718 + B4 SINE B4 6 274 -18 1 1503 486 96 0 0 chr5 120367549 120367622 -32169637 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1503 1201 127 127 64 chr5 120367654 120367890 -32169369 + MTC LTR MaLR 171 421 0 1 1503 924 218 20 35 chr5 120368386 120368586 -32168673 + ID_B1 SINE B4 16 212 -12 1 1503 232 307 50 28 chr5 120368480 120368621 -32168638 - YREP_Mm Unknown Unknown -1518 294 151 1 1503 590 80 23 0 chr5 120368626 120368714 -32168545 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 1 1503 222 328 52 0 chr5 120369066 120369124 -32168135 - MIRm SINE MIR 0 276 216 1 1503 635 213 132 21 chr5 120369454 120369598 -32167661 - RSINE1 SINE B4 -4 161 2 1 1503 370 268 69 30 chr5 120369737 120369868 -32167391 + MIR SINE MIR 52 187 -75 1 1503 388 281 27 22 chr5 120369871 120369996 -32167263 - PB1D10 SINE Alu -2 147 21 1 1503 612 307 62 10 chr5 120370066 120370260 -32166999 + MLT1J LTR MaLR 140 343 -169 1 1503 187 143 0 87 chr5 120370428 120370474 -32166785 - L2b LINE L2 -6 3369 3328 1 1503 661 277 0 0 chr5 120370664 120370805 -32166454 - RSINE1 SINE B4 -17 148 8 1 1503 384 294 90 8 chr5 120371133 120371345 -32165914 - Lx7 LINE L1 -1875 5821 5598 1 1503 562 242 102 0 chr5 120371471 120371599 -32165660 - ID_B1 SINE B4 0 224 84 1 1503 232 226 14 162 chr5 120373535 120373609 -32163650 - PB1D9 SINE Alu -85 63 1 1 1503 38 0 0 38 chr5 120373614 120373639 -32163620 + AT_rich Low_complexity Low_complexity 1 25 0 1 1503 1390 73 15 59 chr5 120373639 120373843 -32163416 + B2_Mm2 SINE B2 1 195 0 1 1503 1244 41 0 0 chr5 120373843 120373989 -32163270 + B1_Mus2 SINE Alu 1 147 0 1 1503 38 0 0 38 chr5 120373989 120374015 -32163244 + AT_rich Low_complexity Low_complexity 1 25 0 1 1503 757 284 158 35 chr5 120374140 120374399 -32162860 + ID_B1 SINE B4 2 292 0 1 1503 227 250 0 0 chr5 120374399 120374455 -32162804 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1503 219 316 0 0 chr5 120374594 120374670 -32162589 + GA-rich Low_complexity Low_complexity 3 78 0 1 1503 260 301 0 14 chr5 120374782 120374856 -32162403 - MLT1A1 LTR MaLR 0 408 336 1 1503 404 211 7 0 chr5 120374946 120375088 -32162171 + (TG)n Simple_repeat Simple_repeat 2 144 0 1 1503 350 146 0 18 chr5 120375088 120375144 -32162115 - HAL1-3A_ME LINE L1 -828 2030 1976 1 1503 309 180 0 20 chr5 120375145 120375196 -32162063 - HAL1-3A_ME LINE L1 -840 2018 1969 1 1503 660 191 0 0 chr5 120375229 120375402 -32161857 + (TG)n Simple_repeat Simple_repeat 2 174 0 1 1503 516 206 0 0 chr5 120375413 120375554 -32161705 + (TG)n Simple_repeat Simple_repeat 2 142 0 1 1503 204 304 64 64 chr5 120375781 120375890 -32161369 + L2b LINE L2 3242 3350 -25 1 1503 521 310 86 53 chr5 120375892 120376203 -32161056 - MLT1F LTR MaLR -1 547 149 1 1503 359 124 13 37 chr5 120376212 120376325 -32160934 - B2_Mm2 SINE B2 0 195 47 1 1503 1256 90 23 0 chr5 120376372 120376549 -32160710 - B2_Mm2 SINE B2 -14 181 1 1 1503 382 200 0 0 chr5 120376633 120376698 -32160561 + PB1D10 SINE Alu 21 85 -32 1 1503 242 304 42 32 chr5 120377343 120377438 -32159821 + MIR3 SINE MIR 93 188 -20 1 1503 184 294 0 42 chr5 120377660 120377731 -32159528 - MIRb SINE MIR -84 184 117 1 1503 348 256 185 8 chr5 120377814 120377944 -32159315 + MIR SINE MIR 19 171 -91 1 1503 2810 57 84 3 chr5 120378423 120378790 -32158469 - MTB LTR MaLR 0 400 4 1 1503 226 360 16 8 chr5 120379057 120379183 -32158076 - MIRb SINE MIR -125 143 17 1 1503 231 224 61 0 chr5 120379417 120379466 -32157793 - MTE2b LTR MaLR -39 340 289 1 1503 914 295 141 66 chr5 120379499 120380073 -32157186 + Lx8 LINE L1 6108 6724 -749 1 1503 273 254 63 55 chr5 120380081 120380318 -32156941 - RMER17A2 LTR ERVK -424 482 244 1 1503 1340 76 48 5 chr5 120380324 120380510 -32156749 - B2_Mm2 SINE B2 -1 194 1 1 1503 1098 223 153 53 chr5 120380525 120380885 -32156374 + MTD LTR MaLR 10 405 -14 1 1503 459 138 57 11 chr5 120380944 120381032 -32156227 - PB1D10 SINE Alu -1 116 25 1 1503 251 186 0 0 chr5 120381354 120381397 -32155862 + PB1D7 SINE Alu 1 43 -77 1 1503 495 207 0 0 chr5 120381558 120381693 -32155566 + (CAGA)n Simple_repeat Simple_repeat 2 136 0 1 1503 570 328 31 11 chr5 120381699 120381890 -32155369 + MTE2a LTR MaLR 177 371 -8 1 1503 268 139 0 0 chr5 120381895 120381938 -32155321 + PB1D7 SINE Alu 1 43 -77 1 1503 219 284 147 0 chr5 120381902 120381997 -32155262 + B3 SINE B2 78 186 -30 1 1503 896 234 68 5 chr5 120382027 120382233 -32155026 + ID_B1 SINE B4 5 223 -1 1 1503 266 290 60 86 chr5 120383573 120383690 -32153569 + MLT1K LTR MaLR 171 284 -311 1 1503 413 273 91 80 chr5 120383849 120383872 -32153387 - MT2A LTR ERVL 0 533 518 1 1503 741 155 224 77 chr5 120383872 120384068 -32153191 + URR1A DNA MER1_type 2 226 0 1 1503 413 286 63 65 chr5 120384068 120384288 -32152971 - MT2A LTR ERVL -16 517 268 1 1503 450 0 0 0 chr5 120384310 120384360 -32152899 + (CAG)n Simple_repeat Simple_repeat 2 51 0 1 1503 2648 77 7 101 chr5 120384360 120384800 -32152459 + RLTR11B LTR ERVK 55 453 0 1 1503 241 330 33 22 chr5 120384802 120384892 -32152367 + MER5A DNA MER1_type 85 175 -14 1 1503 855 211 18 12 chr5 120384994 120385157 -32152102 - RSINE1 SINE B4 0 165 2 1 1503 720 205 11 31 chr5 120386353 120386713 -32150546 + CT-rich Low_complexity Low_complexity 1 352 0 1 1503 339 234 13 13 chr5 120386713 120386791 -32150468 - PB1D10 SINE Alu 0 117 40 1 1503 201 274 0 0 chr5 120387926 120387999 -32149260 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1503 197 170 74 19 chr5 120388065 120388119 -32149140 - MIR SINE MIR -95 167 111 1 1503 540 0 0 0 chr5 120388146 120388206 -32149053 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 1 1503 221 0 35 0 chr5 120388310 120388339 -32148920 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1503 691 291 16 58 chr5 120388405 120388595 -32148664 + MTE2a LTR MaLR 1 182 -197 1 1503 432 0 0 0 chr5 120388595 120388643 -32148616 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1503 371 312 0 52 chr5 120390137 120390272 -32146987 + MTA_Mm LTR MaLR 2 129 -267 1 1503 473 220 82 65 chr5 120390272 120390442 -32146817 + Lx5 LINE L1 6873 7045 -5 1 1503 1731 139 138 10 chr5 120390457 120390769 -32146490 + MTC LTR MaLR 63 414 -7 1 1503 643 231 109 5 chr5 120390893 120391056 -32146203 - ID_B1 SINE B4 -74 218 39 1 1503 633 148 0 0 chr5 120391108 120391250 -32146009 + (TC)n Simple_repeat Simple_repeat 2 143 0 1 1503 477 0 0 0 chr5 120391312 120391365 -32145894 + (GA)n Simple_repeat Simple_repeat 2 54 0 1 1503 433 214 42 19 chr5 120391366 120391472 -32145787 - PB1D10 SINE Alu -5 112 14 1 1503 939 187 61 47 chr5 120391686 120391899 -32145360 - B3 SINE B2 0 216 1 1 1503 891 232 70 59 chr5 120392035 120392291 -32144968 + MTEb LTR MaLR 1 259 -120 1 1503 542 243 40 46 chr5 120392339 120392490 -32144769 + MTEb LTR MaLR 226 375 -4 1 1503 259 265 71 12 chr5 120392487 120392571 -32144688 - PB1D7 SINE Alu -11 109 21 1 1503 207 0 0 0 chr5 120392660 120392683 -32144576 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1503 334 244 47 0 chr5 120393118 120393204 -32144055 + MIR3 SINE MIR 76 165 -43 1 1503 916 215 75 0 chr5 120393236 120393436 -32143823 + ID_B1 SINE B4 2 216 -8 1 1503 490 245 68 54 chr5 120393601 120393748 -32143511 + MER5A DNA MER1_type 3 151 -38 1 1503 255 191 46 31 chr5 120394279 120394344 -32142915 - MIR SINE MIR -64 144 79 1 1503 366 23 0 0 chr5 120394986 120395029 -32142230 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1503 668 263 124 66 chr5 120395047 120395320 -32141939 - B4 SINE B4 0 292 4 1 1503 1306 92 27 5 chr5 120395454 120395640 -32141619 + B2_Mm2 SINE B2 2 191 -4 1 1503 373 333 79 22 chr5 120395662 120395840 -32141419 - MIR SINE MIR -55 207 20 1 1503 495 0 0 0 chr5 120396009 120396064 -32141195 + (TTTTG)n Simple_repeat Simple_repeat 3 57 0 1 1503 379 253 0 13 chr5 120396077 120396153 -32141106 - PB1D10 SINE Alu -41 76 2 1 1503 240 316 48 88 chr5 120396153 120396202 -32141057 - MT2B2 LTR ERVL -350 234 115 1 1503 213 214 24 0 chr5 120396307 120396349 -32140910 + CT-rich Low_complexity Low_complexity 3 45 0 1 1503 191 116 47 0 chr5 120396349 120396392 -32140867 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 1 1503 276 30 0 0 chr5 120396400 120396433 -32140826 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1503 182 354 13 0 chr5 120396637 120396716 -32140543 - MIRb SINE MIR -15 253 174 1 1503 322 120 0 74 chr5 120396896 120396950 -32140309 + B4 SINE B4 28 77 -215 1 1503 261 0 0 0 chr5 120396951 120396980 -32140279 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1503 256 279 127 0 chr5 120396998 120397077 -32140182 + B4 SINE B4 131 219 -73 1 1503 258 278 0 0 chr5 120397120 120397174 -32140085 + B4 SINE B4 234 287 -5 1 1503 425 256 11 0 chr5 120398631 120398721 -32138538 - MLT1J LTR MaLR -339 173 83 1 1503 429 288 54 9 chr5 120398920 120399032 -32138227 + PB1D10 SINE Alu 1 117 0 1 1503 229 252 146 0 chr5 120399040 120399143 -32138116 - MER2 DNA MER2_type -135 210 93 1 1503 905 272 20 35 chr5 120399626 120399881 -32137378 + B4A SINE B4 1 251 -41 1 1503 418 219 388 0 chr5 120399933 120400093 -32137166 - ID_B1 SINE B4 -2 222 1 1 1503 378 107 0 0 chr5 120400263 120400319 -32136940 + (T)n Simple_repeat Simple_repeat 1 56 0 1 1503 1080 214 122 53 chr5 120400747 120401067 -32136192 - ORR1E LTR MaLR -5 354 13 1 1503 1232 84 11 0 chr5 120401073 120401251 -32136008 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 1 1503 411 113 0 0 chr5 120401268 120401330 -32135929 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 1 1503 1075 110 14 0 chr5 120401330 120401476 -32135783 - B1_Mus1 SINE Alu 0 148 1 1 1503 409 326 38 147 chr5 120401528 120401603 -32135656 + Arthur1B DNA Tip100 972 1024 -201 1 1503 653 231 21 14 chr5 120401603 120401748 -32135511 + B1_Mus2 SINE Alu 1 146 -1 1 1503 409 326 38 147 chr5 120401748 120401938 -32135321 + Arthur1B DNA Tip100 1025 1208 -17 1 1503 24 53 0 0 chr5 120402016 120402054 -32135205 + AT_rich Low_complexity Low_complexity 1 38 0 1 1503 350 213 0 0 chr5 120402124 120402185 -32135074 - B3A SINE B2 -134 64 4 1 1503 376 383 7 21 chr5 120402221 120402365 -32134894 + MER58A DNA MER1_type 1 142 -82 1 1503 1911 262 38 8 chr5 120402388 120402889 -32134370 + RMER20A LTR ERVK 1 516 0 1 1503 388 268 98 0 chr5 120403339 120403451 -32133808 + MLT1J LTR MaLR 77 199 -313 1 1503 198 0 0 0 chr5 120404439 120404461 -32132798 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 1 1503 255 178 0 0 chr5 120404640 120404685 -32132574 + L1MA5 LINE L1 6235 6279 -21 1 1503 271 244 92 58 chr5 120404779 120404866 -32132393 - LTR33 LTR ERVL -9 506 417 1 1503 286 216 0 33 chr5 120404928 120405019 -32132240 + (TATG)n Simple_repeat Simple_repeat 4 91 0 1 1503 515 242 11 11 chr5 120405012 120405192 -32132067 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1503 221 323 0 0 chr5 120405192 120405257 -32132002 + (TATG)n Simple_repeat Simple_repeat 4 68 0 1 1503 508 227 11 17 chr5 120405264 120405443 -32131816 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1503 239 269 0 0 chr5 120405445 120405497 -32131762 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1 1503 350 291 78 13 chr5 120406367 120406520 -32130739 - L2a LINE L2 -5 3421 3259 1 1503 596 285 21 36 chr5 120406543 120406736 -32130523 - B3A SINE B2 -8 190 1 1 1503 357 215 25 0 chr5 120406780 120406859 -32130400 + MTE2b LTR MaLR 33 113 -266 1 1503 584 269 19 51 chr5 120407364 120407521 -32129738 + B3A SINE B2 3 154 -44 1 1503 218 29 59 0 chr5 120407521 120407555 -32129704 + (TCTCTG)n Simple_repeat Simple_repeat 2 37 0 1 1503 912 50 22 0 chr5 120407557 120407696 -32129563 + (CA)n Simple_repeat Simple_repeat 1 142 0 1 1503 569 189 0 0 chr5 120408079 120408174 -32129085 + ID_B1 SINE B4 130 224 0 1 1503 346 341 42 6 chr5 120408425 120408590 -32128669 + LTR33 LTR ERVL 332 502 -13 1 1503 454 173 0 0 chr5 120409463 120409538 -32127721 - ID_B1 SINE B4 -4 220 146 1 1503 237 242 28 83 chr5 120409931 120410003 -32127256 + MLT1G LTR MaLR 38 105 -464 1 1503 283 304 53 129 chr5 120410099 120410231 -32127028 + MLT1G LTR MaLR 334 455 -136 1 1503 408 377 62 51 chr5 120410250 120410602 -32126657 + ORR1E LTR MaLR 1 356 -3 1 1503 398 260 33 1 chr5 120411115 120411221 -32126038 - B1F1 SINE Alu -12 108 1 1 1503 614 58 0 23 chr5 120411332 120411420 -32125839 + (TTTTC)n Simple_repeat Simple_repeat 3 88 0 1 1503 551 223 0 0 chr5 120411436 120411539 -32125720 - PB1D9 SINE Alu -2 118 16 1 1503 642 95 0 0 chr5 120411894 120411989 -32125270 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1503 546 239 66 66 chr5 120411994 120412146 -32125113 - B4A SINE B4 -20 272 121 1 1503 186 118 0 0 chr5 120412175 120412209 -32125050 + (ACTG)n Simple_repeat Simple_repeat 2 35 0 1 1503 566 154 18 23 chr5 120412221 120412425 -32124834 + CT-rich Low_complexity Low_complexity 1 203 0 1 1503 271 279 12 25 chr5 120412429 120412510 -32124749 - B4A SINE B4 -205 87 8 1 1503 1231 179 5 23 chr5 120412799 120413016 -32124243 - B3 SINE B2 -1 215 3 1 1503 191 274 0 88 chr5 120413321 120413389 -32123870 + L3 LINE CR1 3235 3296 -1193 1 1503 334 245 37 47 chr5 120414056 120414155 -32123104 + PB1D10 SINE Alu 9 107 -10 1 1503 531 0 0 0 chr5 120414155 120414214 -32123045 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 1 1503 285 29 0 0 chr5 120414367 120414401 -32122858 + (TCTCCC)n Simple_repeat Simple_repeat 1 34 0 1 1503 1162 114 0 6 chr5 120414404 120414572 -32122687 - B2_Mm2 SINE B2 -27 168 2 1 1503 202 303 32 26 chr5 120415212 120415313 -32121946 + MIR SINE MIR 2 109 -159 1 1503 235 321 11 35 chr5 120415318 120415405 -32121854 - ORR1E LTR MaLR -7 372 288 1 1503 333 0 0 0 chr5 120415490 120415527 -32121732 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1503 356 135 0 13 chr5 120415527 120415602 -32121657 + (GA)n Simple_repeat Simple_repeat 1 74 0 1 1503 375 299 17 103 chr5 120415602 120415747 -32121512 - ORR1E LTR MaLR -161 198 69 1 1503 296 250 93 28 chr5 120415747 120415854 -32121405 + PB1D10 SINE Alu 3 116 -1 1 1503 779 31 10 0 chr5 120416073 120416171 -32121088 + (TTCTC)n Simple_repeat Simple_repeat 4 102 0 1 1503 862 156 21 0 chr5 120416171 120416312 -32120947 - B1_Mur3 SINE Alu -5 144 1 1 1503 305 263 147 0 chr5 120416461 120416556 -32120703 + PB1D7 SINE Alu 1 109 -11 1 1503 651 13 0 0 chr5 120416897 120416973 -32120286 + (TTCTG)n Simple_repeat Simple_repeat 4 79 0 1 1503 983 105 28 0 chr5 120416976 120417119 -32120140 - B1_Mus2 SINE Alu 0 147 1 1 1503 191 253 131 40 chr5 120417871 120417970 -32119289 - MIRb SINE MIR -1 267 160 1 1503 315 326 113 21 chr5 120418134 120418275 -32118984 - MIR SINE MIR -92 170 17 1 1503 387 0 0 0 chr5 120418595 120418638 -32118621 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1503 212 276 127 45 chr5 120418871 120418981 -32118278 - L2b LINE L2 -203 3172 3054 1 1503 213 285 113 6 chr5 120419245 120419371 -32117888 + MIR SINE MIR 82 232 -36 1 1503 284 252 18 0 chr5 120419474 120419585 -32117674 + (CATA)n Simple_repeat Simple_repeat 2 114 0 1 1503 369 280 0 0 chr5 120419615 120419862 -32117397 + (CA)n Simple_repeat Simple_repeat 1 247 0 1 1503 431 270 6 0 chr5 120419873 120420047 -32117212 + (CA)n Simple_repeat Simple_repeat 1 175 0 1 1503 253 271 0 0 chr5 120420049 120420131 -32117128 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1503 290 346 64 74 chr5 120421185 120421388 -32115871 + MLT1E LTR MaLR 452 652 -1 1 1503 224 208 0 0 chr5 120421429 120421477 -32115782 + (CACG)n Simple_repeat Simple_repeat 4 51 0 1 1503 204 317 23 13 chr5 120421568 120421672 -32115587 + MIRc SINE MIR 80 186 -82 1 1503 279 312 12 0 chr5 120422091 120422171 -32115088 + ID4_ SINE ID 2 82 -1 1 1503 182 244 0 24 chr5 120422338 120422380 -32114879 + MIRm SINE MIR 228 268 -8 1 1503 512 230 122 149 chr5 120422380 120422676 -32114583 + B4 SINE B4 2 289 -3 1 1503 221 287 74 11 chr5 120422828 120422923 -32114336 - MIRm SINE MIR -136 140 40 1 1503 341 104 30 0 chr5 120424067 120424134 -32113125 + (CAGAGA)n Simple_repeat Simple_repeat 1 69 0 1 1503 281 47 23 0 chr5 120424153 120424196 -32113063 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1503 270 0 0 0 chr5 120424335 120424365 -32112894 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1503 405 325 78 69 chr5 120424373 120424618 -32112641 - B4 SINE B4 -45 247 1 1 1503 556 204 0 0 chr5 120424631 120424724 -32112535 - PB1D10 SINE Alu -15 102 10 1 1503 498 219 10 0 chr5 120424638 120424734 -32112525 - ID_B1 SINE B4 -48 176 80 1 1503 336 211 0 0 chr5 120424923 120424999 -32112260 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1503 592 246 106 27 chr5 120425000 120425188 -32112071 - B3A SINE B2 -13 203 1 1 1503 228 67 0 0 chr5 120425504 120425534 -32111725 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1503 288 0 0 0 chr5 120425842 120425874 -32111385 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1503 591 233 0 0 chr5 120425893 120426069 -32111190 + (TG)n Simple_repeat Simple_repeat 1 176 0 1 1503 212 146 49 0 chr5 120426074 120426115 -32111144 + (TATG)n Simple_repeat Simple_repeat 1 43 0 1 1503 732 195 0 0 chr5 120426117 120426291 -32110968 + (TG)n Simple_repeat Simple_repeat 1 174 0 1 1503 404 302 64 50 chr5 120426779 120426981 -32110278 - MER121 Unknown Unknown -88 324 120 1 1503 547 213 102 0 chr5 120427307 120427415 -32109844 + PB1 SINE Alu 1 119 -8 1 1503 218 281 10 130 chr5 120427430 120427530 -32109729 + ID4 SINE ID 1 88 -64 1 1503 351 78 0 0 chr5 120427642 120427693 -32109566 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1503 498 33 0 0 chr5 120427987 120428047 -32109212 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1503 590 186 94 24 chr5 120428880 120429007 -32108252 + B1_Mur1 SINE Alu 14 149 0 1 1503 369 282 0 0 chr5 120429042 120429113 -32108146 + RSINE1 SINE B4 3 73 -92 1 1503 405 58 0 0 chr5 120429382 120429434 -32107825 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1503 236 216 35 12 chr5 120430173 120430342 -32106917 + CT-rich Low_complexity Low_complexity 3 175 0 1 1503 419 308 29 6 chr5 120430352 120430525 -32106734 + C-rich Low_complexity Low_complexity 1 177 0 1 1503 194 236 32 0 chr5 120430579 120430702 -32106557 + CT-rich Low_complexity Low_complexity 1 127 0 1 1503 301 316 30 20 chr5 120431905 120432005 -32105254 + MIRm SINE MIR 74 174 -102 1 1503 280 335 90 20 chr5 120432340 120432541 -32104718 - MIRb SINE MIR -50 218 4 1 1503 531 0 0 0 chr5 120433494 120433553 -32103706 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1503 1183 42 7 0 chr5 120433620 120433762 -32103497 - B1_Mus1 SINE Alu -4 144 2 1 1503 2581 60 103 6 chr5 120433798 120434149 -32103110 - L1_Mus3 LINE L1 -1 6637 6253 1 1503 556 251 250 25 chr5 120434253 120434534 -32102725 + ORR1E LTR MaLR 22 379 0 1 1503 200 86 29 0 chr5 120434616 120434651 -32102608 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1503 588 226 8 8 chr5 120434690 120434815 -32102444 - RSINE1 SINE B4 -38 127 3 1 1503 300 252 21 78 chr5 120434819 120434961 -32102298 - MER45B DNA Tip100 -102 938 805 1 1503 285 289 91 70 chr5 120436378 120436564 -32100695 + LTR33A LTR ERVL 83 272 -248 1 1503 441 50 0 0 chr5 120436670 120436730 -32100529 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1503 1415 187 129 93 chr5 120436922 120437287 -32099972 + ORR1C1 LTR MaLR 1 378 0 1 1503 346 333 121 36 chr5 120437360 120437525 -32099734 + MER58A DNA MER1_type 44 222 -2 1 1503 224 333 52 104 chr5 120438398 120438465 -32098794 - RSINE1 SINE B4 -6 159 105 1 1503 791 289 35 31 chr5 120438465 120438751 -32098508 - B4A SINE B4 -4 288 2 1 1503 224 333 52 104 chr5 120438751 120438837 -32098422 - RSINE1 SINE B4 -61 104 14 1 1503 307 230 66 26 chr5 120438774 120438850 -32098409 - ID4 SINE ID -4 79 1 1 1503 399 154 0 12 chr5 120439533 120439644 -32097615 - B2_Mm2 SINE B2 -3 192 47 1 1503 1126 82 0 0 chr5 120439665 120439811 -32097448 - B2_Mm2 SINE B2 -49 146 1 1 1503 207 344 29 81 chr5 120440344 120440518 -32096741 - MIRc SINE MIR -27 241 74 1 1503 953 238 26 5 chr5 120440594 120440788 -32096471 + B3 SINE B2 7 204 -12 1 1503 377 206 29 0 chr5 120440877 120440945 -32096314 - HAL1-3A_ME LINE L1 -813 2045 1976 1 1503 354 203 25 0 chr5 120440964 120441082 -32096177 + (TG)n Simple_repeat Simple_repeat 2 122 0 1 1503 1252 240 14 28 chr5 120441083 120441374 -32095885 - B4A SINE B4 -2 290 4 1 1503 210 275 122 29 chr5 120441424 120441526 -32095733 - L2a LINE L2 0 3426 3273 1 1503 360 0 0 0 chr5 120442045 120442085 -32095174 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1503 302 335 51 32 chr5 120442145 120442361 -32094898 - L1MB7 LINE L1 -16 6168 5949 1 1503 324 0 0 0 chr5 120442395 120442431 -32094828 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1503 669 212 76 0 chr5 120442440 120442572 -32094687 - RSINE1 SINE B4 -20 145 4 1 1503 507 226 0 0 chr5 120442588 120442694 -32094565 - PB1D10 SINE Alu -7 110 5 1 1503 471 273 68 61 chr5 120443167 120443315 -32093944 - RSINE1 SINE B4 0 165 17 1 1503 251 262 109 64 chr5 120444463 120444573 -32092686 + PB1D9 SINE Alu 1 115 -5 1 1503 324 347 16 16 chr5 120445891 120446017 -32091242 - MTD LTR MaLR -16 403 278 1 1503 307 240 27 0 chr5 120446040 120446115 -32091144 - MERVL_2A-int LTR ERVL -5544 217 141 1 1503 1506 224 37 124 chr5 120446296 120446786 -32090473 - MT2A LTR ERVL -85 448 2 1 1503 454 277 71 21 chr5 120448057 120448197 -32089062 - B1_Mur2 SINE Alu 0 149 3 1 1503 461 304 162 17 chr5 120448277 120448511 -32088748 + B4A SINE B4 1 268 -24 1 1503 3302 50 5 2 chr5 120448761 120449160 -32088099 - MTB LTR MaLR 0 400 1 1 1503 588 200 47 31 chr5 120449482 120449611 -32087648 - B1_Mur2 SINE Alu -5 144 14 1 1503 384 78 25 25 chr5 120450272 120450351 -32086908 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 1 1503 342 0 0 0 chr5 120451076 120451114 -32086145 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1503 201 39 0 0 chr5 120452365 120452391 -32084868 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1503 1291 63 45 51 chr5 120452924 120453194 -32084065 + MTB LTR MaLR 3 382 -18 1 1503 943 69 5 10 chr5 120453192 120453331 -32083928 - B2_Mm2 SINE B2 -33 162 21 1 1503 21 0 0 0 chr5 120453680 120453701 -32083558 + AT_rich Low_complexity Low_complexity 1 21 0 1 1503 1429 65 11 5 chr5 120453877 120454064 -32083195 - B2_Mm1t SINE B2 -5 188 1 1 1503 296 312 170 36 chr5 120454113 120454336 -32082923 - MLT1E2 LTR MaLR -139 488 236 1 187 1175 237 128 17 chr5 120454838 120455190 -32082069 - RMER19C LTR ERVK -219 392 2 1 1504 233 241 19 0 chr5 120455364 120455418 -32081841 - MER117 DNA MER1_type -28 169 115 1 1504 231 322 110 14 chr5 120455884 120456029 -32081230 - RMER15 LTR ERVL -36 539 381 1 1504 1474 228 158 62 chr5 120456029 120456548 -32080711 - RMER4B LTR ERVK 0 585 17 1 1504 864 123 13 70 chr5 120457507 120457664 -32079595 + B1_Mus1 SINE Alu 1 148 0 1 1504 1782 144 28 101 chr5 120457706 120458061 -32079198 - ORR1A4 LTR MaLR 0 329 1 1 1504 1709 158 31 51 chr5 120459503 120459856 -32077403 - MTC LTR MaLR 0 421 76 1 1504 267 140 100 0 chr5 120460241 120460291 -32076968 - MTC LTR MaLR -352 69 15 1 1504 1907 156 22 55 chr5 120460409 120460775 -32076484 - ORR1B1 LTR MaLR 0 394 41 1 1504 337 168 15 108 chr5 120461774 120461868 -32075391 + B1F SINE Alu 11 101 -26 1 1504 402 255 58 43 chr5 120461897 120462119 -32075140 - ORR1B1 LTR MaLR -157 170 1 1 1504 2140 197 40 60 chr5 120463071 120463568 -32073691 + Lx7 LINE L1 6896 7382 -314 1 1504 483 130 0 0 chr5 120463620 120463697 -32073562 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1504 307 241 35 24 chr5 120464108 120464193 -32073066 - MLT1M LTR MaLR -487 185 100 1 1504 841 239 139 29 chr5 120464426 120464746 -32072513 - MTD LTR MaLR -19 360 18 1 1504 180 264 94 0 chr5 120466407 120466460 -32070799 + MIRb SINE MIR 204 261 -7 1 1504 185 186 22 44 chr5 120467159 120467204 -32070055 + L3 LINE CR1 3539 3582 -907 1 1504 735 321 172 28 chr5 120467539 120467998 -32069261 + MT2A LTR ERVL 1 525 -8 1 1504 526 243 0 0 chr5 120468385 120468496 -32068763 - Lx9 LINE L1 -1035 6609 6499 1 1504 323 241 102 91 chr5 120469908 120470095 -32067164 + RMER15 LTR ERVL 380 568 -7 1 1504 1258 78 67 6 chr5 120472069 120472249 -32065010 + B2_Mm2 SINE B2 1 191 -4 1 1504 1334 87 27 0 chr5 120472672 120472857 -32064402 - B2_Mm2 SINE B2 -3 192 3 1 1504 2440 141 27 15 chr5 120472871 120473281 -32063978 - MTC LTR MaLR -2 419 5 1 1504 369 0 0 0 chr5 120473541 120473582 -32063677 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1504 608 161 17 0 chr5 120473760 120473878 -32063381 + CT-rich Low_complexity Low_complexity 2 121 0 1 1504 21 0 0 0 chr5 120474100 120474121 -32063138 + GC_rich Low_complexity Low_complexity 1 21 0 1 1504 450 0 0 0 chr5 120474990 120475040 -32062219 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1504 656 279 143 76 chr5 120475117 120475563 -32061696 - Lx9 LINE L1 -355 7289 6814 1 1504 633 173 0 93 chr5 120475575 120475715 -32061544 - MTC LTR MaLR 0 421 295 1 1504 487 285 33 59 chr5 120475720 120475873 -32061386 + B4A SINE B4 26 174 -118 1 1504 451 332 97 21 chr5 120476032 120476269 -32060990 - MT2A LTR ERVL -152 381 127 1 1504 533 238 68 15 chr5 120476265 120476397 -32060862 - MTC LTR MaLR -280 139 1 1 1504 1800 169 104 38 chr5 120476751 120476794 -32060465 - MTC LTR MaLR -1 420 376 1 1504 729 0 0 0 chr5 120476794 120476875 -32060384 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 1 1504 1800 169 104 38 chr5 120476875 120477225 -32060034 - MTC LTR MaLR -46 375 2 1 1504 1171 88 0 0 chr5 120478114 120478262 -32058997 - B1_Mus1 SINE Alu 0 148 1 1 1504 230 320 27 0 chr5 120479194 120479269 -32057990 - ID4_ SINE ID -6 77 1 1 1504 231 320 53 0 chr5 120480478 120480553 -32056706 - MLT1J LTR MaLR -201 311 233 1 1504 234 91 0 0 chr5 120480652 120480685 -32056574 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1504 322 311 24 16 chr5 120481826 120481950 -32055309 + Lx7 LINE L1 7116 7240 -456 1 1504 432 0 0 0 chr5 120481952 120482000 -32055259 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1504 651 199 29 14 chr5 120482194 120482332 -32054927 + B1_Mur2 SINE Alu 1 140 -9 1 1504 404 284 0 44 chr5 120482366 120482480 -32054779 + PB1D10 SINE Alu 1 109 -8 1 1504 795 199 7 27 chr5 120482541 120482691 -32054568 + B1_Mur3 SINE Alu 1 147 -2 1 1504 2292 117 6 0 chr5 120482712 120483036 -32054223 + ORR1A3 LTR MaLR 1 326 0 1 1504 2079 108 120 0 chr5 120485841 120486166 -32051093 - RMER19A LTR ERVK -373 364 1 1 1504 1958 106 4 4 chr5 120487612 120487886 -32049373 - RMER19B LTR ERVK 0 902 629 1 1504 869 235 72 13 chr5 120488634 120488871 -32048388 - MTD LTR MaLR 0 419 169 1 1504 453 301 54 27 chr5 120489831 120489978 -32047281 - MTEb LTR MaLR -1 378 228 1 1504 1246 304 198 42 chr5 120489982 120490931 -32046328 - MTE-int LTR MaLR -483 1097 1 1 1504 550 298 98 84 chr5 120493915 120494274 -32042985 - MTE-int LTR MaLR -1104 476 113 1 1504 238 143 63 25 chr5 120495805 120495884 -32041375 + (TTTG)n Simple_repeat Simple_repeat 4 85 0 1 1504 311 121 17 0 chr5 120496479 120496537 -32040722 + (CTA)n Simple_repeat Simple_repeat 1 59 0 1 1504 213 121 0 0 chr5 120496538 120496571 -32040688 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1 1504 1995 100 60 19 chr5 120496912 120497227 -32040032 - RLTR33 LTR ERVK -349 329 2 1 1504 1082 103 0 0 chr5 120497364 120497520 -32039739 - MT2B LTR ERVL -16 585 430 1 1504 1523 212 25 69 chr5 120497529 120498096 -32039163 - RLTR11A LTR ERVK -6 522 1 1 1504 2543 214 38 36 chr5 120498098 120498712 -32038547 - MYSERV-int LTR ERVK -2 6548 5934 1 1504 1252 159 26 78 chr5 120498712 120498944 -32038315 - MT2B LTR ERVL -191 410 191 1 1504 345 206 0 42 chr5 120498887 120498958 -32038301 - RLTR25A LTR ERVK -531 572 505 1 1504 365 293 90 8 chr5 120499615 120499749 -32037510 - MTD LTR MaLR 0 419 275 1 1504 1598 219 115 14 chr5 120501446 120501862 -32035397 + Lx6 LINE L1 7001 7458 -2 1 1504 703 162 0 0 chr5 120501870 120501987 -32035272 - MTC LTR MaLR -304 117 1 2 1504 316 273 91 0 chr5 120503075 120503174 -32034085 + PB1D10 SINE Alu 5 112 -5 3 1504 1474 58 0 5 chr5 120503208 120503400 -32033859 + B2_Mm2 SINE B2 1 191 -4 4 1504 860 252 103 69 chr5 120504136 120504455 -32032804 + MTD LTR MaLR 65 394 -25 5 1504 290 331 35 35 chr5 120506894 120507033 -32030226 + MLT1A0 LTR MaLR 20 158 -207 6 1504 738 252 0 7 chr5 120507033 120507185 -32030074 + B3A SINE B2 1 151 -47 7 1504 249 33 0 0 chr5 120507197 120507227 -32030032 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1504 748 235 181 13 chr5 120507370 120507607 -32029652 - B4A SINE B4 -6 286 10 9 1504 991 59 67 0 chr5 120507720 120507855 -32029404 + B1_Mus1 SINE Alu 5 148 0 1 1504 216 111 0 0 chr5 120507855 120507891 -32029368 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 1 1504 289 174 233 0 chr5 120508231 120508317 -32028942 - B4A SINE B4 -137 155 50 1 1504 2680 89 12 21 chr5 120508320 120508745 -32028514 + BGLII LTR ERVK 1 421 0 1 1504 491 254 170 12 chr5 120508992 120509163 -32028096 - B4A SINE B4 -56 236 39 1 1504 363 282 0 0 chr5 120509436 120509521 -32027738 + Lx8 LINE L1 7250 7334 -139 1 1504 1509 232 18 193 chr5 120509558 120510299 -32026960 - RMER19C LTR ERVK 0 611 1 1 1504 321 282 27 124 chr5 120510334 120510520 -32026739 - MLT1A1 LTR MaLR 0 408 241 1 1504 531 322 153 5 chr5 120511295 120511586 -32025673 - ORR1E LTR MaLR -17 342 1 1 1504 674 250 12 30 chr5 120511617 120511782 -32025477 - RSINE1 SINE B4 0 165 4 1 1504 248 324 71 9 chr5 120512881 120512993 -32024266 - MER20 DNA MER1_type -68 151 33 2 1504 707 97 97 0 chr5 120514347 120514450 -32022809 + 5S rRNA rRNA 5 117 -4 2 1504 535 144 9 9 chr5 120514468 120514580 -32022679 + (TG)n Simple_repeat Simple_repeat 2 113 0 2 1504 280 339 35 9 chr5 120515085 120515198 -32022061 - B3A SINE B2 -23 175 60 2 1504 224 330 78 0 chr5 120515477 120515580 -32021679 + MIRb SINE MIR 120 230 -38 2 1504 460 225 18 5 chr5 120515592 120515820 -32021439 + (CA)n Simple_repeat Simple_repeat 1 231 0 2 1504 302 159 171 0 chr5 120515846 120515934 -32021325 - RCHARR1 DNA MER1_type -107 867 765 2 1504 640 188 181 7 chr5 120515932 120516087 -32021172 + B4 SINE B4 109 290 -2 2 1504 557 323 128 15 chr5 120516100 120516436 -32020823 - RCHARR1 DNA MER1_type -591 383 10 2 1504 231 374 0 0 chr5 120516476 120516559 -32020700 + ID4 SINE ID 1 83 0 2 1504 217 167 20 20 chr5 120516714 120516763 -32020496 + MIRc SINE MIR 109 157 -111 2 1504 260 314 54 34 chr5 120517838 120518001 -32019258 + MIR SINE MIR 38 220 -48 3 1504 886 248 19 9 chr5 120518318 120518534 -32018725 + ID_B1 SINE B4 1 218 -6 3 1504 453 307 193 14 chr5 120518542 120518760 -32018499 + B4A SINE B4 1 257 -35 3 1504 750 135 20 13 chr5 120518825 120518975 -32018284 + A-rich Low_complexity Low_complexity 3 153 0 3 1504 443 314 21 14 chr5 120519468 120519610 -32017649 - B4A SINE B4 -148 144 2 3 1504 200 318 0 76 chr5 120519657 120519749 -32017510 - MER5B DNA MER1_type -89 89 5 3 1504 293 266 174 35 chr5 120520602 120520746 -32016513 - B4A SINE B4 -101 191 28 3 1504 1424 117 13 18 chr5 120520806 120521032 -32016227 - URR1B DNA MER1_type 0 225 1 3 1504 224 337 0 11 chr5 120521138 120521231 -32016028 + MIRb SINE MIR 111 202 -66 3 1504 306 212 0 0 chr5 120521814 120521913 -32015346 + C-rich Low_complexity Low_complexity 1 99 0 3 1504 239 316 117 7 chr5 120522846 120522983 -32014276 + RMER15 LTR ERVL 411 562 -13 4 1504 557 252 8 8 chr5 120523015 120523147 -32014112 + B1_Mur2 SINE Alu 2 133 -16 4 1504 506 294 0 0 chr5 120523168 120523287 -32013972 + ID_B1 SINE B4 86 204 -20 4 1504 661 136 40 12 chr5 120523612 120523949 -32013310 + (CA)n Simple_repeat Simple_repeat 1 346 0 4 1504 247 279 70 0 chr5 120523950 120524036 -32013223 + MIR SINE MIR 88 179 -83 4 1504 225 196 0 0 chr5 120524964 120525015 -32012244 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1504 1789 152 79 6 chr5 120525993 120526323 -32010936 + ORR1B1 LTR MaLR 41 394 0 4 1504 529 298 0 7 chr5 120526421 120526563 -32010696 + B3A SINE B2 7 147 -51 4 1504 252 0 0 0 chr5 120526563 120526591 -32010668 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1504 217 361 41 8 chr5 120526752 120526875 -32010384 + MIRb SINE MIR 127 253 -15 4 1504 1368 83 16 0 chr5 120527170 120527362 -32009897 - B2_Mm2 SINE B2 0 195 1 5 1504 582 15 0 0 chr5 120527660 120527727 -32009532 + (TTC)n Simple_repeat Simple_repeat 3 69 0 5 1504 570 282 0 0 chr5 120527814 120527945 -32009314 + RSINE1 SINE B4 2 132 -33 5 1504 258 299 166 7 chr5 120528448 120528593 -32008666 + MLT1H2 LTR MaLR 225 392 -97 5 1504 207 196 0 0 chr5 120528860 120528884 -32008375 + T-rich Low_complexity Low_complexity 33 56 0 5 1504 1488 52 16 0 chr5 120528884 120529076 -32008183 - B2_Mm2 SINE B2 0 195 1 5 1504 207 196 0 0 chr5 120529076 120529107 -32008152 + T-rich Low_complexity Low_complexity 2 32 0 5 1504 322 278 0 92 chr5 120529353 120529472 -32007787 - Lx7 LINE L1 -1800 5896 5789 5 1504 333 277 10 10 chr5 120529473 120529575 -32007684 - PB1D10 SINE Alu -15 102 1 5 1504 203 315 28 0 chr5 120530401 120530490 -32006769 + MIRb SINE MIR 72 163 -105 5 1504 763 246 32 9 chr5 120531417 120531634 -32005625 + ID_B1 SINE B4 2 223 -1 6 1504 296 237 33 66 chr5 120531735 120531955 -32005304 + (GGATG)n Simple_repeat Simple_repeat 1 212 0 6 1504 460 200 47 9 chr5 120532234 120532340 -32004919 - ID_B1 SINE B4 0 224 115 6 1504 273 270 125 9 chr5 120532654 120532766 -32004493 + MER5A1 DNA MER1_type 5 129 -37 6 1504 229 266 78 0 chr5 120533235 120533299 -32003960 - L1MB3 LINE L1 -65 6118 6050 6 1504 453 19 0 0 chr5 120533336 120533390 -32003869 + (TC)n Simple_repeat Simple_repeat 2 55 0 6 1504 257 322 0 0 chr5 120533856 120533915 -32003344 + ID SINE ID 23 81 -143 6 1504 313 214 167 0 chr5 120534226 120534310 -32002949 + B1_Mus2 SINE Alu 23 120 -27 6 1504 1081 73 0 0 chr5 120534435 120534572 -32002687 - B1_Mm SINE Alu -9 138 2 6 1504 198 0 0 0 chr5 120535096 120535118 -32002141 + (CACCC)n Simple_repeat Simple_repeat 5 26 0 6 1504 469 260 83 8 chr5 120536322 120536454 -32000805 + RSINE1 SINE B4 2 143 -22 7 1504 288 0 0 0 chr5 120536454 120536486 -32000773 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1504 385 298 185 5 chr5 120536542 120536726 -32000533 + B4A SINE B4 2 218 -74 7 1504 381 250 57 0 chr5 120536737 120536825 -32000434 + B1_Mur2 SINE Alu 1 93 -56 7 1504 204 200 0 0 chr5 120536860 120536905 -32000354 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1504 496 56 56 0 chr5 120536950 120537039 -32000220 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 7 1504 231 208 0 0 chr5 120537159 120537207 -32000052 + B1_Mur2 SINE Alu 101 148 -1 7 1504 276 53 0 0 chr5 120538324 120538362 -31998897 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1504 205 298 12 45 chr5 120538606 120538717 -31998542 - MIR SINE MIR -120 148 35 7 1504 816 88 0 0 chr5 120539481 120539595 -31997664 + (TC)n Simple_repeat Simple_repeat 1 114 0 7 1504 520 264 39 8 chr5 120540545 120540675 -31996584 - B1F1 SINE Alu -6 143 10 7 1504 490 254 111 10 chr5 120541110 120541291 -31995968 + B3 SINE B2 7 189 -6 8 1504 252 308 122 0 chr5 120542370 120542477 -31994782 + MER20 DNA MER1_type 38 157 -62 8 1504 374 0 22 0 chr5 120542583 120542629 -31994630 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1504 402 280 240 0 chr5 120543543 120543693 -31993566 + ID_B1 SINE B4 3 188 -36 8 1504 1173 131 0 5 chr5 120543690 120543874 -31993385 + MTB_Mm LTR MaLR 221 403 -4 8 1504 894 199 21 0 chr5 120543876 120544062 -31993197 + B3 SINE B2 27 216 0 8 1504 31 26 0 0 chr5 120544080 120544118 -31993141 + AT_rich Low_complexity Low_complexity 1 38 0 8 1504 1150 68 0 0 chr5 120544122 120544269 -31992990 + B1_Mus1 SINE Alu 2 148 0 8 1504 1136 129 6 0 chr5 120544298 120544469 -31992790 + B2_Mm2 SINE B2 2 173 -22 8 1504 249 131 21 21 chr5 120544501 120544548 -31992711 + B2_Mm2 SINE B2 47 93 -102 8 1504 434 295 50 82 chr5 120544747 120545129 -31992130 + ORR1E LTR MaLR 7 360 -10 9 1504 1130 50 0 0 chr5 120545512 120545651 -31991608 + B1_Mus1 SINE Alu 1 139 -9 9 1504 855 258 41 5 chr5 120545677 120545895 -31991364 + B4 SINE B4 1 226 -66 9 1504 575 303 7 0 chr5 120545898 120546053 -31991206 + B3A SINE B2 4 159 -39 9 1504 240 35 0 0 chr5 120546066 120546095 -31991164 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1504 306 292 0 10 chr5 120546173 120546270 -31990989 + (CA)n Simple_repeat Simple_repeat 1 96 0 9 1504 212 190 35 0 chr5 120546274 120546332 -31990927 + (CATA)n Simple_repeat Simple_repeat 3 62 0 9 1504 412 332 8 12 chr5 120546359 120546619 -31990640 + (CA)n Simple_repeat Simple_repeat 1 259 0 9 1504 242 148 0 20 chr5 120547010 120547059 -31990200 - MIR SINE MIR -110 166 111 9 1504 352 188 0 0 chr5 120547595 120547659 -31989600 + PB1D10 SINE Alu 34 97 -20 9 1504 253 284 0 26 chr5 120547670 120547746 -31989513 + BC1_Mm scRNA scRNA 6 79 -73 1 1504 225 240 187 0 chr5 120547843 120547918 -31989341 + RSINE1 SINE B4 7 95 -70 1 1504 512 0 32 0 chr5 120547982 120548045 -31989214 + (CATA)n Simple_repeat Simple_repeat 2 66 0 1 1504 1150 177 5 9 chr5 120548096 120548307 -31988952 - B3 SINE B2 -4 212 3 1 1504 395 307 83 39 chr5 120548423 120548579 -31988680 + ORR1E LTR MaLR 1 163 -196 1 1504 394 150 14 50 chr5 120548579 120548719 -31988540 + (CATA)n Simple_repeat Simple_repeat 4 138 0 1 1504 378 243 43 68 chr5 120548784 120548947 -31988312 + L1M4b LINE L1 1766 1924 -5410 1 1504 230 149 30 0 chr5 120548990 120549057 -31988202 + (CAGA)n Simple_repeat Simple_repeat 4 72 0 1 1504 267 122 0 0 chr5 120549086 120549135 -31988124 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1504 351 119 0 0 chr5 120549172 120549239 -31988020 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1504 268 312 0 0 chr5 120549437 120549501 -31987758 + B1F1 SINE Alu 3 66 -83 1 1504 425 303 18 0 chr5 120549674 120549783 -31987476 + RSINE1 SINE B4 2 112 -53 1 1504 701 253 101 26 chr5 120549774 120550042 -31987217 + B4A SINE B4 5 292 0 1 1504 252 0 0 0 chr5 120550071 120550099 -31987160 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1504 1016 113 0 7 chr5 120550112 120550255 -31987004 + B1_Mur3 SINE Alu 1 142 -7 1 1504 235 203 69 42 chr5 120550377 120550449 -31986810 - ID SINE ID -149 75 2 1 1504 411 21 0 0 chr5 120550744 120550792 -31986467 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1 1504 640 125 0 0 chr5 120550800 120550896 -31986363 + RSINE1 SINE B4 2 97 -68 1 1504 803 232 18 0 chr5 120550898 120551062 -31986197 + B3A SINE B2 2 168 -30 1 1504 387 0 0 0 chr5 120551098 120551141 -31986118 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1504 692 222 48 100 chr5 120551253 120551403 -31985856 + ID_B1 SINE B4 3 143 -81 1 1504 1107 52 0 0 chr5 120551403 120551539 -31985720 + B1_Mus1 SINE Alu 2 137 -11 1 1504 201 74 0 0 chr5 120551539 120551566 -31985693 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1504 692 222 48 100 chr5 120551566 120551624 -31985635 + ID_B1 SINE B4 144 200 -24 1 1504 389 206 43 11 chr5 120551769 120551862 -31985397 - PB1D7 SINE Alu -16 104 9 1 1504 351 303 2 44 chr5 120552517 120552646 -31984613 + MIRc SINE MIR 11 134 -142 1 1504 313 283 38 30 chr5 120553109 120553240 -31984019 - MLT1B LTR MaLR -191 199 68 1 1504 242 216 71 102 chr5 120553302 120553400 -31983859 - MIRc SINE MIR -98 170 76 1 1504 240 131 0 76 chr5 120553945 120554011 -31983248 + C-rich Low_complexity Low_complexity 3 63 0 1 1504 239 95 48 0 chr5 120554289 120554331 -31982928 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1 1504 207 0 0 0 chr5 120554329 120554352 -31982907 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1504 1200 35 0 0 chr5 120554358 120554502 -31982757 - B1_Mus2 SINE Alu -1 146 3 1 1504 1234 116 26 0 chr5 120554514 120554704 -31982555 - B2_Mm2 SINE B2 0 195 1 1 1504 238 187 6 0 chr5 120554804 120554865 -31982394 - MIR SINE MIR -146 122 64 1 1504 1156 61 0 0 chr5 120555553 120555700 -31981559 + B1_Mus1 SINE Alu 2 148 0 1 1504 1211 152 8 51 chr5 120555829 120556064 -31981195 - URR1B DNA MER1_type 0 225 1 1 1504 440 261 86 18 chr5 120556993 120557181 -31980078 - MIRc SINE MIR -41 227 20 1 1504 1230 153 101 0 chr5 120557260 120557341 -31979918 - RLTR11A2 LTR ERVK 0 527 447 1 1504 220 27 0 51 chr5 120557341 120557380 -31979879 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1 1504 1230 153 101 0 chr5 120557380 120557526 -31979733 - RLTR11A2 LTR ERVK -81 446 278 1 1504 339 150 0 0 chr5 120557527 120557587 -31979672 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 1504 1091 76 177 0 chr5 120557589 120557747 -31979512 - B2_Mm2 SINE B2 -8 187 2 1 1504 896 168 0 6 chr5 120557790 120557964 -31979295 + CT-rich Low_complexity Low_complexity 3 175 0 1 1504 1341 155 34 46 chr5 120557979 120558242 -31979017 - RLTR11A2 LTR ERVK -267 260 1 1 1504 715 290 60 60 chr5 120558284 120558552 -31978707 + B4A SINE B4 8 275 -17 1 1504 381 43 0 0 chr5 120558571 120558618 -31978641 + (TC)n Simple_repeat Simple_repeat 1 47 0 1 1504 252 0 0 0 chr5 120558618 120558645 -31978614 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1504 1440 132 27 0 chr5 120558813 120559032 -31978227 - URR1B DNA MER1_type 0 225 1 1 1504 21 0 0 0 chr5 120559775 120559796 -31977463 + AT_rich Low_complexity Low_complexity 1 21 0 1 1504 350 346 61 8 chr5 120559945 120560076 -31977183 - B4A SINE B4 -140 152 15 1 1504 229 118 0 0 chr5 120560138 120560172 -31977087 + tRNA-Glu-GAG_ tRNA tRNA 4 37 -38 1 1504 1030 279 117 30 chr5 120560339 120560672 -31976587 - MTEa LTR MaLR 0 379 18 1 1504 3668 122 24 31 chr5 120560825 120561402 -31975857 + Lx LINE L1 6077 6649 -5 1 1504 746 223 51 6 chr5 120561447 120561623 -31975636 + B3A SINE B2 15 198 0 1 1504 880 140 21 14 chr5 120561759 120561904 -31975355 - B1_Mus2 SINE Alu -1 146 1 1 1504 761 245 0 7 chr5 120561933 120562081 -31975178 + B1_Mus2 SINE Alu 1 147 0 1 1504 302 269 31 31 chr5 120562101 120562197 -31975062 + MLT1B LTR MaLR 30 125 -265 1 1504 2509 82 55 8 chr5 120562324 120562704 -31974555 - MTB_Mm LTR MaLR -7 400 3 1 1504 1458 181 97 125 chr5 120562947 120563338 -31973921 + ORR1C2 LTR MaLR 5 384 0 1 1504 717 196 7 27 chr5 120563494 120563641 -31973618 - B1_Mur1 SINE Alu -3 146 3 1 1504 606 60 40 10 chr5 120563988 120564089 -31973170 - B2_Mm2 SINE B2 -3 192 89 1 1504 537 16 0 0 chr5 120564099 120564161 -31973098 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1504 694 263 45 40 chr5 120564168 120564366 -31972893 - B4 SINE B4 0 292 94 1 1504 291 312 61 75 chr5 120564703 120564750 -31972509 + L1MB8 LINE L1 5553 5594 -590 1 1504 1237 54 0 0 chr5 120564750 120564897 -31972362 + B1_Mus1 SINE Alu 2 148 0 1 1504 335 312 70 58 chr5 120564897 120565112 -31972147 + L1MB8 LINE L1 5595 5813 -371 1 1504 180 0 0 0 chr5 120565112 120565132 -31972127 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1504 335 312 72 53 chr5 120565132 120565228 -31972031 + L1MB8 LINE L1 5814 5905 -273 1 1504 298 262 129 12 chr5 120565322 120565492 -31971767 + Lx7 LINE L1 7485 7674 -22 1 1504 1606 27 6 0 chr5 120565492 120565675 -31971584 + B2_Mm1a SINE B2 1 184 -9 1 1504 273 286 12 23 chr5 120565691 120565777 -31971482 - RLTR25A LTR ERVK -498 605 521 1 1504 761 134 8 0 chr5 120565703 120565822 -31971437 - B1_Mus1 SINE Alu -28 120 1 1 1504 229 264 8 8 chr5 120565710 120565836 -31971423 - ORR1B1-int LTR MaLR -750 759 634 1 1504 318 260 0 150 chr5 120565856 120565969 -31971290 - RSINE1 SINE B4 -65 100 5 1 1504 364 234 0 0 chr5 120565971 120566035 -31971224 + L1MB8 LINE L1 6111 6174 -4 1 1504 503 149 81 0 chr5 120566098 120566185 -31971074 + B1_Mus1 SINE Alu 5 98 -50 1 1504 302 243 27 0 chr5 120566197 120566271 -31970988 - PB1D9 SINE Alu -2 118 43 1 1504 623 273 257 7 chr5 120566845 120567149 -31970110 + MTD LTR MaLR 1 380 -41 1 1504 1507 58 16 0 chr5 120567152 120567343 -31969916 - B2_Mm2 SINE B2 0 195 2 1 1504 412 187 80 45 chr5 120567444 120567556 -31969703 + PB1D10 SINE Alu 1 116 -1 1 1504 817 176 52 12 chr5 120567603 120567775 -31969484 - URR1A DNA MER1_type 0 226 48 1 1504 228 182 171 57 chr5 120567826 120567896 -31969363 - PB1D9 SINE Alu -3 117 40 1 1504 874 156 7 39 chr5 120567922 120568075 -31969184 - B1_Mur2 SINE Alu 0 149 2 1 1504 4070 139 127 107 chr5 120570449 120571454 -31965805 - RLTR25B LTR ERVK 0 1028 3 1 1504 364 336 77 50 chr5 120571544 120571766 -31965493 - L2a LINE L2 -8 3418 3140 1 1504 363 44 0 0 chr5 120572320 120572365 -31964894 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1504 605 252 112 6 chr5 120572506 120572666 -31964593 + B3A SINE B2 4 180 -18 1 1504 219 316 0 0 chr5 120572996 120573072 -31964187 + GA-rich Low_complexity Low_complexity 2 77 0 1 1504 207 100 0 0 chr5 120573158 120573188 -31964071 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 1 1504 384 103 0 0 chr5 120573417 120573475 -31963784 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 1 1504 311 197 0 40 chr5 120574409 120574483 -31962776 + B4 SINE B4 1 71 -221 1 1504 217 204 0 22 chr5 120574532 120574577 -31962682 - ID2 SINE ID -36 47 4 1 1504 254 344 53 47 chr5 120577838 120578009 -31959250 - MIRb SINE MIR -41 227 56 1 1504 461 209 124 0 chr5 120578841 120578946 -31958313 + B1_Mur1 SINE Alu 32 149 0 1 1504 5284 165 40 15 chr5 120578982 120579867 -31957392 - RMER13B LTR ERVK 0 908 2 1 1504 526 249 56 61 chr5 120579873 120580053 -31957206 + B3 SINE B2 38 216 0 1 1504 799 218 129 26 chr5 120580175 120580465 -31956794 - ORR1D1 LTR MaLR -73 321 1 1 1504 571 200 31 23 chr5 120580465 120580593 -31956666 - ORR1D1 LTR MaLR -245 129 1 1 1504 249 322 0 53 chr5 120580902 120580997 -31956262 + MIRc SINE MIR 93 182 -86 1 1504 294 350 161 6 chr5 120581498 120581659 -31955600 - MER33 DNA MER1_type -54 270 85 1 1504 256 302 89 51 chr5 120584880 120585037 -31952222 - MLT1G3 LTR MaLR -202 393 231 1 1505 319 338 36 14 chr5 120587418 120587556 -31949703 - L2b LINE L2 -316 3059 2919 1 1505 1780 154 100 54 chr5 120587786 120588137 -31949122 - ORR1B2 LTR MaLR 0 367 1 1 1505 241 254 18 0 chr5 120589977 120590091 -31947168 + CT-rich Low_complexity Low_complexity 2 117 0 1 1505 297 75 0 0 chr5 120590273 120590313 -31946946 + (GGA)n Simple_repeat Simple_repeat 1 40 0 1 1505 248 294 113 53 chr5 120591504 120591637 -31945622 - MamGypLTR1b LTR Gypsy -502 280 140 1 1505 492 161 32 11 chr5 120592606 120592700 -31944559 + B1F2 SINE Alu 52 147 -2 1 1505 255 236 0 0 chr5 120593691 120593746 -31943513 + ID4_ SINE ID 1 55 -28 1 1505 807 201 88 21 chr5 120594819 120595012 -31942247 - B3 SINE B2 -4 212 7 2 1505 243 0 0 0 chr5 120595782 120595809 -31941450 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1505 365 58 0 19 chr5 120598027 120598080 -31939179 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 2 1505 278 269 74 27 chr5 120598781 120598911 -31938348 - MIR SINE MIR -78 184 50 2 1505 306 0 0 0 chr5 120599019 120599053 -31938206 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2 1505 222 37 0 0 chr5 120599520 120599547 -31937712 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2 1505 492 208 170 67 chr5 120600083 120600248 -31937011 - B3A SINE B2 -16 182 1 2 1505 226 307 0 116 chr5 120600572 120600701 -31936558 + RLTR11B LTR ERVK 83 196 -257 2 1505 381 304 36 0 chr5 120601855 120601967 -31935292 + MER117 DNA MER1_type 41 156 -41 2 1505 251 298 85 34 chr5 120602936 120603054 -31934205 + MIRb SINE MIR 26 149 -119 2 1505 514 284 73 13 chr5 120604435 120604585 -31932674 - MIRb SINE MIR -95 173 15 2 1505 261 279 0 0 chr5 120607302 120607363 -31929896 + GA-rich Low_complexity Low_complexity 1 61 0 2 1505 329 241 0 12 chr5 120607568 120607648 -31929611 + PB1D10 SINE Alu 28 106 -11 2 1505 359 145 14 0 chr5 120608569 120608638 -31928621 + CT-rich Low_complexity Low_complexity 2 71 0 2 1505 1063 261 72 22 chr5 120610197 120610558 -31926701 - MTEa LTR MaLR 0 379 1 2 1505 252 0 0 0 chr5 120610792 120610820 -31926439 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2 1505 360 64 0 0 chr5 120611126 120611173 -31926086 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1505 390 228 25 0 chr5 120611702 120611781 -31925478 - ID4_ SINE ID -2 81 1 2 1505 384 91 0 0 chr5 120611781 120611836 -31925423 - ZP3AR Satellite Satellite -117 95 41 2 1505 189 0 0 0 chr5 120611893 120611914 -31925345 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1505 185 279 84 42 chr5 120612807 120612878 -31924381 - L3 LINE CR1 -3565 924 851 2 1505 309 51 0 0 chr5 120612970 120613009 -31924250 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1505 248 306 28 0 chr5 120613016 120613088 -31924171 + (CATG)n Simple_repeat Simple_repeat 4 77 0 2 1505 513 218 84 52 chr5 120613089 120613244 -31924015 - RSINE1 SINE B4 -4 161 2 2 1505 270 0 0 0 chr5 120614251 120614281 -31922978 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2 1505 262 224 157 93 chr5 120615984 120616092 -31921167 + MER58B DNA MER1_type 161 269 -72 2 1505 1528 67 0 5 chr5 120617183 120617377 -31919882 - B2_Mm1a SINE B2 0 193 1 2 1505 261 0 0 0 chr5 120617554 120617583 -31919676 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 2 1505 193 163 41 0 chr5 120617647 120617696 -31919563 + CT-rich Low_complexity Low_complexity 3 53 0 2 1505 485 268 8 8 chr5 120618555 120618679 -31918580 - B1F1 SINE Alu -21 128 5 2 1505 248 291 63 71 chr5 120618574 120618700 -31918559 - B4 SINE B4 -94 198 74 2 1505 542 303 80 13 chr5 120619006 120619230 -31918029 - B4A SINE B4 -5 287 49 2 1505 441 36 0 0 chr5 120621643 120621698 -31915561 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1505 192 77 0 0 chr5 120624103 120624129 -31913130 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1505 209 244 45 19 chr5 120626297 120626372 -31910887 + MIRm SINE MIR 96 172 -104 2 1505 1714 142 126 59 chr5 120630732 120631090 -31906169 + ORR1C2 LTR MaLR 1 382 -2 2 1505 284 341 0 12 chr5 120633641 120633752 -31903507 - MIR SINE MIR -141 127 24 2 1505 21 36 0 0 chr5 120634283 120634311 -31902948 + AT_rich Low_complexity Low_complexity 1 28 0 2 1505 314 308 122 39 chr5 120634659 120634872 -31902387 - MLT1B LTR MaLR -235 232 1 2 1505 253 262 83 53 chr5 120635540 120635709 -31901550 + L1MB8 LINE L1 5929 6102 -76 2 1505 474 49 0 0 chr5 120637707 120637768 -31899491 + (TTGG)n Simple_repeat Simple_repeat 2 62 0 2 1505 191 258 76 0 chr5 120638007 120638073 -31899186 + L4 LINE RTE 406 476 -1553 2 1505 282 394 35 21 chr5 120638952 120639097 -31898162 - MIRb SINE MIR -71 197 51 2 1505 434 70 14 0 chr5 120639180 120639251 -31898008 + (TCTG)n Simple_repeat Simple_repeat 3 74 0 2 1505 200 289 30 30 chr5 120639374 120639474 -31897785 + L2b LINE L2 3245 3344 -31 2 1505 189 0 0 0 chr5 120639725 120639746 -31897513 + (GGGA)n Simple_repeat Simple_repeat 2 22 0 2 1505 237 261 8 75 chr5 120639767 120639887 -31897372 + CT-rich Low_complexity Low_complexity 1 112 0 2 1505 429 20 0 0 chr5 120640584 120640634 -31896625 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1505 210 405 86 11 chr5 120641460 120641647 -31895612 - L2a LINE L2 -237 3189 2989 2 1505 423 270 94 7 chr5 120642018 120642156 -31895103 - L2a LINE L2 -963 2456 2307 2 1505 272 332 127 33 chr5 120643331 120643543 -31893716 + Charlie8 DNA MER1_type 43 274 -2154 2 1505 318 336 35 0 chr5 120644477 120644593 -31892666 - PB1 SINE Alu -7 120 1 2 1505 351 0 0 0 chr5 120645716 120645755 -31891504 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 1505 266 302 73 0 chr5 120645900 120645996 -31891263 - L2b LINE L2 -2 3373 3271 2 1505 226 146 62 0 chr5 120646096 120646144 -31891115 - L2a LINE L2 -350 3076 3026 2 1505 645 80 0 0 chr5 120649405 120649493 -31887766 + (TGGA)n Simple_repeat Simple_repeat 1 88 0 2 1505 638 251 77 43 chr5 120650316 120650524 -31886735 + B3 SINE B2 1 215 -1 2 1505 208 306 0 0 chr5 120650568 120650640 -31886619 + C-rich Low_complexity Low_complexity 1 72 0 2 1505 205 138 0 0 chr5 120651382 120651411 -31885848 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1505 673 274 13 6 chr5 120651685 120651843 -31885416 + RSINE1 SINE B4 2 160 -5 2 1505 224 280 9 9 chr5 120651863 120651971 -31885288 + (TA)n Simple_repeat Simple_repeat 1 108 0 2 1505 231 301 110 0 chr5 120652024 120652097 -31885162 + MIRc SINE MIR 53 133 -135 2 1505 2503 145 26 19 chr5 120652130 120652546 -31884713 - MTC LTR MaLR -2 419 1 2 1505 945 163 184 31 chr5 120653321 120653517 -31883742 + URR1A DNA MER1_type 1 226 0 2 1505 829 271 97 65 chr5 120654083 120654391 -31882868 - ORR1E LTR MaLR -1 358 41 2 1505 891 81 52 0 chr5 120654498 120654634 -31882625 - B2_Mm2 SINE B2 -50 145 3 2 1505 246 349 111 26 chr5 120657491 120657644 -31879615 - MIRc SINE MIR -46 222 57 2 1505 491 82 14 0 chr5 120658648 120658721 -31878538 + (TC)n Simple_repeat Simple_repeat 2 75 0 2 1505 442 248 0 10 chr5 120659148 120659250 -31878009 - MIRc SINE MIR -144 124 24 2 1505 1290 116 26 0 chr5 120659916 120660105 -31877154 - B2_Mm2 SINE B2 0 195 2 2 1505 185 333 148 34 chr5 120660319 120660468 -31876791 + MIRc SINE MIR 57 222 -46 2 1505 202 205 0 0 chr5 120660939 120660978 -31876281 + C-rich Low_complexity Low_complexity 2 40 0 2 1505 417 274 20 0 chr5 120661584 120661686 -31875573 + PB1D10 SINE Alu 13 116 -1 2 1505 790 116 34 17 chr5 120661768 120661944 -31875315 + CT-rich Low_complexity Low_complexity 2 180 0 2 1505 816 169 0 12 chr5 120662112 120662362 -31874897 + (TG)n Simple_repeat Simple_repeat 1 246 0 2 1505 278 267 13 26 chr5 120663834 120663911 -31873348 + (TATG)n Simple_repeat Simple_repeat 1 76 0 2 1505 279 156 298 99 chr5 120663912 120664033 -31873226 - B2_Mm2 SINE B2 -3 192 48 2 1505 983 98 98 0 chr5 120664072 120664225 -31873034 - B2_Mm1t SINE B2 -25 168 1 2 1505 224 171 24 0 chr5 120664363 120664404 -31872855 - RSINE1 SINE B4 -43 122 81 2 1505 314 200 160 0 chr5 120664516 120664591 -31872668 + PB1D10 SINE Alu 10 96 -21 2 1505 2482 138 32 5 chr5 120664596 120664997 -31872262 + MTC LTR MaLR 8 419 -2 2 1505 189 94 0 0 chr5 120665129 120665161 -31872098 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1505 1208 55 0 0 chr5 120665178 120665324 -31871935 - B1_Mus2 SINE Alu 0 147 2 2 1505 572 231 7 10 chr5 120665462 120665605 -31871654 - PB1D10 SINE Alu 0 149 9 2 1505 258 260 188 45 chr5 120665499 120665632 -31871627 - B4A SINE B4 -68 224 73 2 1505 671 139 0 18 chr5 120665851 120665961 -31871298 - ORR1C1 LTR MaLR -1 377 270 2 1505 399 41 0 0 chr5 120665961 120666010 -31871249 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1505 1222 86 103 6 chr5 120666010 120666026 -31871233 - B2_Mm2 SINE B2 -3 192 159 2 1505 189 0 0 0 chr5 120666026 120666047 -31871212 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 2 1505 1222 86 103 6 chr5 120666047 120666205 -31871054 - B2_Mm2 SINE B2 -37 158 2 2 1505 198 103 0 0 chr5 120666205 120666234 -31871025 + (TC)n Simple_repeat Simple_repeat 1 29 0 2 1505 1008 108 160 51 chr5 120666236 120666411 -31870848 - B2_Mm2 SINE B2 0 195 2 2 1505 991 170 18 0 chr5 120666411 120666582 -31870677 - ORR1C1 LTR MaLR -204 174 1 2 1505 441 103 0 0 chr5 120666959 120667027 -31870232 + (TG)n Simple_repeat Simple_repeat 2 69 0 2 1505 474 200 24 0 chr5 120667069 120667154 -31870105 + PB1D10 SINE Alu 11 97 -20 2 1505 735 71 0 0 chr5 120667220 120667318 -31869941 + (GA)n Simple_repeat Simple_repeat 1 98 0 2 1505 478 279 83 18 chr5 120668323 120668491 -31868768 + B4 SINE B4 30 208 -84 2 1505 269 345 78 21 chr5 120668982 120669161 -31868098 + MIRb SINE MIR 3 189 -79 2 1505 244 348 11 0 chr5 120669625 120669717 -31867542 - MER117 DNA MER1_type 0 197 105 2 1505 236 214 0 0 chr5 120669738 120669780 -31867479 + B4A SINE B4 19 60 -232 2 1505 903 9 26 0 chr5 120669815 120669931 -31867328 + (TG)n Simple_repeat Simple_repeat 2 120 0 2 1505 586 218 96 22 chr5 120670100 120670236 -31867023 - B1_Mur2 SINE Alu -2 147 2 2 1505 727 236 58 0 chr5 120670236 120670410 -31866849 - B4 SINE B4 -107 185 2 2 1505 274 319 35 18 chr5 120670503 120670683 -31866576 + L2c LINE L2 2979 3161 -214 3 1505 230 333 23 11 chr5 120671153 120671241 -31866018 - MLT1H LTR MaLR -337 212 124 3 1505 301 203 31 15 chr5 120671336 120671401 -31865858 - MLT1H LTR MaLR -413 136 71 3 1505 252 276 161 18 chr5 120672055 120672194 -31865065 + MIRm SINE MIR 41 186 -90 3 1505 379 265 189 13 chr5 120673598 120673751 -31863508 - ID_B1 SINE B4 -10 214 35 3 1505 188 323 136 8 chr5 120673891 120674016 -31863243 + L3 LINE CR1 3935 4075 -414 3 1505 210 262 8 151 chr5 120674557 120674683 -31862576 + PB1 SINE Alu 18 125 -2 3 1505 31 26 0 0 chr5 120674728 120674766 -31862493 + AT_rich Low_complexity Low_complexity 1 38 0 3 1505 413 241 115 9 chr5 120674827 120674940 -31862319 + ID_B1 SINE B4 90 214 -10 3 1505 813 94 12 12 chr5 120674940 120675101 -31862158 + (TAGA)n Simple_repeat Simple_repeat 2 162 0 3 1505 207 212 233 39 chr5 120675148 120675251 -31862008 + MIRc SINE MIR 70 195 -81 3 1505 194 365 48 0 chr5 120675228 120675332 -31861927 + MIR SINE MIR 37 145 -117 3 1505 225 0 0 0 chr5 120675936 120675961 -31861298 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1505 447 19 0 0 chr5 120675961 120676012 -31861247 + (GA)n Simple_repeat Simple_repeat 2 53 0 3 1505 450 301 112 5 chr5 120676551 120676765 -31860494 + MIR SINE MIR 8 244 -18 3 1505 585 283 18 25 chr5 120676798 120676965 -31860294 + ID_B1 SINE B4 47 211 -13 3 1505 432 0 0 0 chr5 120676968 120677016 -31860243 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 3 1505 623 295 95 38 chr5 120677027 120677291 -31859968 + B4A SINE B4 8 286 -6 3 1505 185 132 0 26 chr5 120677324 120677363 -31859896 + (CACG)n Simple_repeat Simple_repeat 1 38 0 3 1505 496 203 108 17 chr5 120677383 120677503 -31859756 + B3 SINE B2 58 188 -28 3 1505 24 0 0 0 chr5 120677520 120677544 -31859715 + AT_rich Low_complexity Low_complexity 1 24 0 3 1505 299 250 0 0 chr5 120677773 120677829 -31859430 + RSINE1 SINE B4 21 76 -89 3 1505 219 222 0 53 chr5 120677877 120677904 -31859355 + polypurine Low_complexity Low_complexity 4 30 0 3 1505 1093 34 0 140 chr5 120677904 120678075 -31859184 + B1_Mus2 SINE Alu 1 147 0 3 1505 219 222 0 53 chr5 120678075 120678104 -31859155 + polypurine Low_complexity Low_complexity 31 57 0 3 1505 188 69 0 0 chr5 120678667 120678696 -31858563 - MIR SINE MIR -125 137 109 3 1505 252 0 0 0 chr5 120679512 120679540 -31857719 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1505 284 311 29 0 chr5 120680219 120680319 -31856940 - MIRc SINE MIR -123 145 36 3 1505 205 284 6 0 chr5 120680585 120680651 -31856608 + MIRc SINE MIR 87 154 -114 3 1505 270 0 0 0 chr5 120681079 120681109 -31856150 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 1505 287 25 25 0 chr5 120681109 120681148 -31856111 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1505 227 143 32 0 chr5 120681197 120681260 -31855999 + (CAGA)n Simple_repeat Simple_repeat 4 68 0 3 1505 195 100 0 0 chr5 120681290 120681320 -31855939 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1505 777 11 0 0 chr5 120681762 120681852 -31855407 + (GA)n Simple_repeat Simple_repeat 1 90 0 3 1505 23 33 0 0 chr5 120682054 120682084 -31855175 + GC_rich Low_complexity Low_complexity 1 30 0 3 1505 288 290 14 38 chr5 120682182 120682391 -31854868 + G-rich Low_complexity Low_complexity 1 204 0 3 1505 309 226 18 54 chr5 120682235 120682347 -31854912 + GA-rich Low_complexity Low_complexity 1 108 0 3 1505 391 241 35 44 chr5 120682720 120682833 -31854426 + B1F2 SINE Alu 37 148 -1 3 1505 399 330 37 59 chr5 120682921 120683208 -31854051 + MER102a DNA MER1_type 61 330 0 3 1505 1169 64 0 0 chr5 120683386 120683527 -31853732 + B1_Mus1 SINE Alu 2 142 -6 3 1505 207 0 0 0 chr5 120683529 120683552 -31853707 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1505 649 237 144 5 chr5 120683683 120683870 -31853389 + B3 SINE B2 1 213 -3 3 1505 681 280 59 5 chr5 120683941 120684128 -31853131 + B4A SINE B4 27 223 -69 3 1505 261 292 28 0 chr5 120684932 120685004 -31852255 + LTR16E1 LTR ERVL 463 536 -2 3 1505 248 311 0 13 chr5 120686010 120686085 -31851174 + MIRc SINE MIR 80 153 -115 3 1505 694 252 128 28 chr5 120686262 120686544 -31850715 - MLT1D LTR MaLR -15 490 181 3 1505 438 239 17 17 chr5 120686545 120686724 -31850535 + CT-rich Low_complexity Low_complexity 1 179 0 3 1505 364 261 11 0 chr5 120686765 120686853 -31850406 - PB1D10 SINE Alu -2 115 27 3 1505 471 286 19 52 chr5 120686849 120687004 -31850255 - MLT1D LTR MaLR -300 205 56 3 1505 270 183 50 0 chr5 120687034 120687094 -31850165 - MIR SINE MIR -64 144 82 3 1505 978 316 109 88 chr5 120688496 120689610 -31847649 + L1M2 LINE L1 2534 3671 -2472 3 1505 688 167 52 22 chr5 120689612 120689747 -31847512 + B3 SINE B2 2 140 -76 3 1505 681 104 262 7 chr5 120689752 120689897 -31847362 + URR1B DNA MER1_type 1 182 -43 3 1505 304 289 0 43 chr5 120689793 120689934 -31847325 - CYRA11_Mm Unknown Y-chromosome -299 318 184 3 1505 219 366 51 29 chr5 120690030 120690168 -31847091 + MIRb SINE MIR 105 245 -23 3 1505 4905 151 57 59 chr5 120690512 120691125 -31846134 + RMER17B LTR ERVK 1 620 -338 3 1505 1734 16 0 10 chr5 120691125 120691320 -31845939 - B2_Mm1a SINE B2 0 193 1 3 1505 4905 151 57 59 chr5 120691320 120691666 -31845593 + RMER17B LTR ERVK 621 958 0 3 1505 3844 98 27 25 chr5 120691899 120692538 -31844721 - RMER17B LTR ERVK 0 958 319 3 1505 1269 54 5 51 chr5 120692528 120692724 -31844535 + B2_Mm1a SINE B2 7 193 0 3 1505 2326 88 8 34 chr5 120692719 120693074 -31844185 - RMER17B LTR ERVK -612 346 1 3 1505 243 103 0 0 chr5 120693986 120694025 -31843234 + (TTTTC)n Simple_repeat Simple_repeat 4 42 0 3 1505 331 274 34 50 chr5 120694082 120694201 -31843058 - PB1D10 SINE Alu 0 117 1 3 1505 333 0 0 0 chr5 120695066 120695103 -31842156 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1505 525 44 0 0 chr5 120695179 120695247 -31842012 + (TCCC)n Simple_repeat Simple_repeat 4 71 0 3 1505 180 0 0 0 chr5 120695439 120695459 -31841800 + (GGGA)n Simple_repeat Simple_repeat 4 23 0 3 1505 204 275 0 38 chr5 120695629 120695682 -31841577 + MIR SINE MIR 100 150 -58 3 1505 902 280 19 9 chr5 120696675 120696891 -31840368 + ID_B1 SINE B4 1 218 -6 3 1505 339 229 29 0 chr5 120696969 120697039 -31840220 - MIRm SINE MIR -121 155 84 3 1505 440 62 0 15 chr5 120697337 120697402 -31839857 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1505 499 342 53 34 chr5 120697407 120697502 -31839757 - B4A SINE B4 -15 277 183 3 1505 755 161 13 77 chr5 120697502 120697657 -31839602 - B1_Mus1 SINE Alu -1 147 3 3 1505 499 342 53 34 chr5 120697657 120697827 -31839432 - B4A SINE B4 -110 182 7 3 1505 214 287 92 0 chr5 120698189 120698276 -31838983 + L2b LINE L2 3249 3343 -32 3 1505 872 176 28 0 chr5 120698298 120698549 -31838710 + (TGGA)n Simple_repeat Simple_repeat 1 258 0 3 1505 227 286 26 13 chr5 120699167 120699245 -31838014 + CT-rich Low_complexity Low_complexity 5 83 0 3 1505 279 320 0 0 chr5 120700058 120700133 -31837126 + B4 SINE B4 2 76 -216 3 1505 737 215 60 18 chr5 120700220 120700386 -31836873 + B4A SINE B4 109 281 -11 3 1505 706 284 98 51 chr5 120701177 120701452 -31835807 + B4A SINE B4 5 292 0 3 1505 228 253 0 0 chr5 120701454 120701545 -31835714 + (CA)n Simple_repeat Simple_repeat 1 91 0 3 1505 260 328 109 22 chr5 120702653 120702837 -31834422 + L2 LINE L2 2635 2834 -585 3 1505 242 254 17 0 chr5 120703548 120703607 -31833652 - L3b LINE CR1 -193 289 230 3 1505 656 142 28 9 chr5 120704511 120704618 -31832641 - PB1D9 SINE Alu -11 109 1 3 1505 355 223 54 71 chr5 120704937 120705066 -31832193 + PB1D10 SINE Alu 16 142 -7 3 1505 189 206 0 0 chr5 120705931 120705965 -31831294 - L2b LINE L2 -15 3360 3327 3 1505 663 279 37 24 chr5 120705972 120706218 -31831041 + B4A SINE B4 3 251 -41 3 1505 401 183 42 133 chr5 120706513 120706633 -31830626 + PB1D10 SINE Alu 3 111 -6 3 1505 366 392 57 26 chr5 120706769 120706997 -31830262 - B4A SINE B4 0 292 58 3 1505 274 353 78 7 chr5 120707209 120707363 -31829896 + MER2 DNA MER2_type 16 180 -165 3 1505 249 228 0 0 chr5 120707427 120707484 -31829775 - L1MC LINE L1 -2058 5824 5768 3 1505 495 234 0 0 chr5 120708392 120708499 -31828760 - PB1D7 SINE Alu -13 107 1 3 1505 294 227 53 13 chr5 120708535 120708611 -31828648 + PB1D7 SINE Alu 36 114 -6 3 1505 226 164 18 18 chr5 120708614 120708670 -31828589 + GA-rich Low_complexity Low_complexity 3 58 0 3 1505 1462 84 0 10 chr5 120708795 120708987 -31828272 - B2_Mm2 SINE B2 -5 190 1 3 1505 693 274 100 57 chr5 120709289 120709568 -31827691 + B4A SINE B4 1 291 -1 3 1505 1044 191 0 11 chr5 120710097 120710287 -31826972 - B2_Mm2 SINE B2 -7 188 1 3 1505 199 306 0 0 chr5 120710349 120710398 -31826861 - MIRc SINE MIR -138 130 82 3 1505 180 318 0 16 chr5 120710409 120710473 -31826786 - MIR SINE MIR -122 140 78 3 1505 210 281 0 0 chr5 120711351 120711408 -31825851 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 3 1505 296 274 17 11 chr5 120711426 120711603 -31825656 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 3 1505 505 220 4 26 chr5 120711674 120711948 -31825311 + (TGGA)n Simple_repeat Simple_repeat 1 267 0 3 1505 363 73 0 0 chr5 120712543 120712598 -31824661 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 3 1505 517 228 0 54 chr5 120713370 120713500 -31823759 + RSINE1 SINE B4 3 125 -40 3 1505 229 135 0 37 chr5 120713924 120713978 -31823281 + (CCCCG)n Simple_repeat Simple_repeat 3 54 0 3 1505 886 116 65 0 chr5 120714105 120714243 -31823016 - B1_Mus2 SINE Alu 0 147 1 3 1505 516 32 0 0 chr5 120715028 120715090 -31822169 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1505 445 244 74 16 chr5 120715995 120716116 -31821143 + RSINE1 SINE B4 2 129 -36 4 1505 21 0 0 0 chr5 120716157 120716178 -31821081 + AT_rich Low_complexity Low_complexity 1 21 0 4 1505 508 323 100 43 chr5 120716414 120716436 -31820823 + B4 SINE B4 70 237 -55 4 1505 764 160 8 0 chr5 120716436 120716561 -31820698 + B1_Mus2 SINE Alu 9 134 -13 4 1505 339 25 0 0 chr5 120716561 120716601 -31820658 + (TAAAA)n Simple_repeat Simple_repeat 4 43 0 4 1505 508 323 100 43 chr5 120716601 120716663 -31820596 + B4 SINE B4 238 291 -1 4 1505 244 224 0 0 chr5 120716671 120716721 -31820538 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1505 420 20 0 0 chr5 120716721 120716770 -31820489 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1505 221 313 0 0 chr5 120716770 120716786 -31820473 + (CACG)n Simple_repeat Simple_repeat 2 17 0 4 1505 260 275 29 0 chr5 120716793 120716862 -31820397 - MLT1K LTR MaLR -319 276 206 4 1505 459 0 0 0 chr5 120717061 120717112 -31820147 + (CATA)n Simple_repeat Simple_repeat 2 52 0 4 1506 387 0 0 0 chr5 120717711 120717754 -31819505 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1506 468 0 0 0 chr5 120717820 120717872 -31819387 + (TC)n Simple_repeat Simple_repeat 1 52 0 4 1506 671 184 36 22 chr5 120717891 120718030 -31819229 - B1_Mm SINE Alu 0 147 7 4 1506 274 329 27 34 chr5 120718179 120718327 -31818932 - RSINE1 SINE B4 -11 154 8 4 1506 645 175 67 67 chr5 120718398 120718563 -31818696 - MTD LTR MaLR -11 408 244 4 1506 965 162 26 73 chr5 120718531 120718764 -31818495 + MTD LTR MaLR 198 419 0 4 1506 531 178 35 92 chr5 120718768 120718910 -31818349 - B4 SINE B4 -1 291 158 4 1506 246 345 26 26 chr5 120719089 120719202 -31818057 - MIRb SINE MIR -68 200 88 4 1506 892 291 67 4 chr5 120720015 120720284 -31816975 + B4 SINE B4 4 289 -3 4 1506 181 310 67 58 chr5 120720343 120720463 -31816796 - MIRb SINE MIR -104 164 44 4 1506 251 221 25 68 chr5 120720547 120720663 -31816596 + MIR SINE MIR 95 211 -57 4 1506 282 73 0 0 chr5 120720940 120720981 -31816278 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1506 620 204 9 17 chr5 120722342 120722457 -31814802 + PB1D10 SINE Alu 3 116 -1 4 1506 227 256 0 0 chr5 120722813 120722856 -31814403 + polypyrimidine Low_complexity Low_complexity 2 44 0 4 1506 444 246 6 11 chr5 120722857 120723034 -31814225 + CT-rich Low_complexity Low_complexity 3 178 0 4 1506 601 273 99 45 chr5 120723233 120723567 -31813692 - L1MB5 LINE L1 -68 6106 5755 4 1506 414 100 0 0 chr5 120723569 120723629 -31813630 + (TA)n Simple_repeat Simple_repeat 2 61 0 4 1506 540 236 55 0 chr5 120724365 120724492 -31812767 + ID_B1 SINE B4 88 221 -3 4 1506 240 305 0 0 chr5 120724492 120724551 -31812708 + GA-rich Low_complexity Low_complexity 1 59 0 4 1506 267 210 16 16 chr5 120724641 120724704 -31812555 + MIR SINE MIR 85 147 -115 4 1506 28 0 0 0 chr5 120724731 120724759 -31812500 + AT_rich Low_complexity Low_complexity 1 28 0 4 1506 805 307 39 43 chr5 120724960 120725375 -31811884 - L1MA4A LINE L1 -415 5888 5476 4 1506 1506 34 34 0 chr5 120725392 120725569 -31811690 + B2_Mm1a SINE B2 3 185 -8 4 1506 1267 172 9 14 chr5 120725585 120725797 -31811462 - B3 SINE B2 -5 211 1 4 1506 204 250 39 0 chr5 120726949 120727001 -31810258 - MIR SINE MIR -72 136 83 4 1506 379 273 83 64 chr5 120727050 120727316 -31809943 - RLTR15 LTR ERVK -18 341 71 4 1506 298 253 123 49 chr5 120727288 120727450 -31809809 - RLTR15 LTR ERVK -185 174 1 4 1506 191 257 115 29 chr5 120727451 120727555 -31809704 + L2c LINE L2 2992 3104 -283 4 1506 255 295 72 60 chr5 120727794 120727877 -31809382 + MTEb LTR MaLR 282 365 -14 4 1506 827 234 69 0 chr5 120727974 120728162 -31809097 - ID_B1 SINE B4 -19 205 5 4 1506 1040 75 22 0 chr5 120728223 120728357 -31808902 + B1_Mus1 SINE Alu 2 138 -10 4 1506 230 0 33 0 chr5 120728357 120728387 -31808872 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4 1506 246 291 123 41 chr5 120728983 120729105 -31808154 - MIR SINE MIR -65 143 12 4 1506 232 306 165 2 chr5 120729416 120729530 -31807729 - MIR SINE MIR -49 159 30 4 1506 293 301 0 73 chr5 120730624 120730789 -31806470 + G-rich Low_complexity Low_complexity 5 157 0 4 1506 204 200 0 0 chr5 120730837 120730882 -31806377 + GA-rich Low_complexity Low_complexity 1 45 0 4 1506 238 196 0 0 chr5 120731903 120731949 -31805310 + PB1D7 SINE Alu 48 93 -27 4 1506 772 296 70 7 chr5 120732027 120732299 -31804960 - B4 SINE B4 -3 289 1 4 1506 723 233 42 11 chr5 120732327 120732518 -31804741 - B3A SINE B2 0 198 2 4 1506 398 243 129 29 chr5 120732798 120732855 -31804404 + B4 SINE B4 12 85 -207 4 1506 387 0 0 0 chr5 120732855 120732898 -31804361 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 4 1506 398 243 129 29 chr5 120732898 120732980 -31804279 + B4 SINE B4 86 164 -128 4 1506 303 289 43 17 chr5 120732980 120733014 -31804245 + PB1D9 SINE Alu 2 120 0 4 1506 604 147 0 10 chr5 120733078 120733181 -31804078 - B1_Mur4 SINE Alu -48 102 1 4 1506 346 204 0 150 chr5 120733181 120733203 -31804056 - MT2B LTR ERVL -342 233 147 4 1506 187 204 23 0 chr5 120733372 120733416 -31803843 - MIR SINE MIR -76 132 88 4 1506 223 247 74 63 chr5 120733603 120733698 -31803561 - L2c LINE L2 -186 3201 3106 4 1506 239 232 70 28 chr5 120733946 120734017 -31803242 - ID SINE ID -144 80 7 4 1506 584 191 52 0 chr5 120734006 120734121 -31803138 - B1_Mm SINE Alu -25 122 2 4 1506 341 306 90 0 chr5 120734122 120734233 -31803026 - PB1 SINE Alu -4 123 3 4 1506 228 236 34 0 chr5 120734240 120734329 -31802930 + CT-rich Low_complexity Low_complexity 6 97 0 4 1506 571 169 34 0 chr5 120734362 120734510 -31802749 + CT-rich Low_complexity Low_complexity 1 153 0 4 1506 357 247 21 0 chr5 120734510 120734607 -31802652 - PB1D7 SINE Alu -21 99 1 4 1506 281 361 42 8 chr5 120734511 120734631 -31802628 - ID_B1 SINE B4 -48 176 53 4 1506 267 292 0 36 chr5 120734981 120735091 -31802168 + C-rich Low_complexity Low_complexity 4 109 0 4 1506 247 331 41 28 chr5 120735419 120735571 -31801688 - MIRb SINE MIR -83 179 34 4 1506 182 294 29 14 chr5 120735836 120735905 -31801354 + MIR SINE MIR 59 128 -134 4 1506 190 276 52 13 chr5 120736041 120736118 -31801141 - MIR SINE MIR -80 182 103 4 1506 228 241 0 0 chr5 120736332 120736386 -31800873 + L2b LINE L2 3092 3145 -230 4 1506 346 218 143 38 chr5 120736441 120736546 -31800713 - PB1D10 SINE Alu -1 116 1 4 1506 189 0 0 0 chr5 120737724 120737745 -31799514 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1506 681 199 0 0 chr5 120737748 120737924 -31799335 + (TA)n Simple_repeat Simple_repeat 2 177 0 4 1506 270 0 0 0 chr5 120738839 120738869 -31798390 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1506 301 250 24 12 chr5 120738870 120738955 -31798304 + MIRc SINE MIR 106 191 -77 4 1506 293 299 68 61 chr5 120739048 120739107 -31798152 + RMER17C LTR ERVK 70 130 -280 4 1506 423 0 0 0 chr5 120739107 120739154 -31798105 + (TC)n Simple_repeat Simple_repeat 2 48 0 4 1506 293 299 68 61 chr5 120739154 120739372 -31797887 + RMER17C LTR ERVK 131 348 -62 4 1506 414 259 87 64 chr5 120739564 120739589 -31797670 - B2_Mm2 SINE B2 -18 177 156 4 1506 429 103 0 0 chr5 120739589 120739657 -31797602 + (TG)n Simple_repeat Simple_repeat 1 68 0 4 1506 589 238 95 0 chr5 120739657 120739804 -31797455 - B3A SINE B2 -37 161 1 4 1506 377 280 75 0 chr5 120739921 120740070 -31797189 + MIRb SINE MIR 47 214 -54 4 1506 326 226 36 0 chr5 120740556 120740640 -31796619 + MLT1I LTR MaLR 325 411 0 4 1506 225 94 0 0 chr5 120741169 120741201 -31796058 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1506 999 123 0 0 chr5 120741822 120741985 -31795274 + (GGGGA)n Simple_repeat Simple_repeat 5 167 0 4 1506 700 221 57 25 chr5 120742205 120742363 -31794896 - RSINE1 SINE B4 0 165 3 4 1506 632 240 67 0 chr5 120743335 120743514 -31793745 + ID_B1 SINE B4 29 219 -5 4 1506 411 162 0 0 chr5 120743748 120743828 -31793431 + CT-rich Low_complexity Low_complexity 1 80 0 4 1506 428 212 0 23 chr5 120743828 120743915 -31793344 - PB1D10 SINE Alu -21 96 12 4 1506 269 26 26 0 chr5 120744050 120744088 -31793171 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 4 1506 364 212 164 57 chr5 120744208 120744348 -31792911 - MER20 DNA MER1_type -62 157 3 4 1506 384 22 0 0 chr5 120744497 120744542 -31792717 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1506 264 347 21 0 chr5 120745027 120745122 -31792137 - MER81 DNA AcHobo 0 114 18 4 1506 715 257 31 10 chr5 120745483 120745676 -31791583 + ID_B1 SINE B4 23 219 -5 4 1506 379 256 22 0 chr5 120745691 120745781 -31791478 + RSINE1 SINE B4 21 112 -53 4 1506 367 240 87 40 chr5 120745789 120745915 -31791344 + ID_B1 SINE B4 80 211 -13 4 1506 669 130 78 0 chr5 120745802 120745917 -31791342 + B1_Mus2 SINE Alu 13 136 -11 4 1506 317 115 0 0 chr5 120745917 120745978 -31791281 + Lx2 LINE L1 6907 6967 -30 4 1506 438 20 0 0 chr5 120745978 120746029 -31791230 + (TA)n Simple_repeat Simple_repeat 1 51 0 4 1506 303 200 21 32 chr5 120746029 120746060 -31791199 + Lx2 LINE L1 6967 6997 -3 4 1506 1414 11 6 11 chr5 120746077 120746252 -31791007 + L1Md_F2 LINE L1 6409 6582 0 4 1506 1251 126 11 5 chr5 120746263 120746454 -31790805 + B2_Mm1t SINE B2 1 192 -1 4 1506 346 319 73 111 chr5 120747692 120747953 -31789306 + MIRb SINE MIR 2 252 -10 4 1506 621 157 0 55 chr5 120749256 120749292 -31787967 - RMER4A LTR ERVK 0 466 431 4 1506 627 51 0 0 chr5 120749292 120749371 -31787888 + (TTCTCC)n Simple_repeat Simple_repeat 3 81 0 4 1506 621 157 0 55 chr5 120749371 120749462 -31787797 - RMER4A LTR ERVK -36 430 347 4 1506 1595 183 42 45 chr5 120749459 120749814 -31787445 - RMER4A LTR ERVK -75 391 38 4 1506 262 274 41 0 chr5 120750120 120750193 -31787066 + GA-rich Low_complexity Low_complexity 2 77 0 5 1506 198 237 67 17 chr5 120751271 120751331 -31785928 + MIR SINE MIR 107 169 -93 5 1506 216 314 0 34 chr5 120751900 120751989 -31785270 + GA-rich Low_complexity Low_complexity 4 89 0 5 1506 351 287 11 63 chr5 120752127 120752302 -31784957 + C-rich Low_complexity Low_complexity 2 167 0 5 1506 203 200 91 0 chr5 120753010 120753065 -31784194 + MIR SINE MIR 110 169 -93 5 1506 231 371 0 49 chr5 120753931 120754053 -31783206 - PB1D10 SINE Alu -1 116 1 5 1506 457 287 63 6 chr5 120754053 120754122 -31783137 - ID SINE ID -144 80 3 5 1506 430 243 63 0 chr5 120754895 120755006 -31782253 - ID_B1 SINE B4 0 224 107 5 1506 327 254 120 24 chr5 120755006 120755018 -31782241 - B1F1 SINE Alu 0 147 13 5 1506 306 0 0 0 chr5 120755063 120755097 -31782162 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 5 1506 330 214 0 0 chr5 120755267 120755356 -31781903 + (ATGGTG)n Simple_repeat Simple_repeat 4 92 0 5 1506 607 246 127 12 chr5 120756374 120756547 -31780712 + B3A SINE B2 6 198 0 5 1506 885 181 0 7 chr5 120756572 120756711 -31780548 + B1_Mur2 SINE Alu 3 140 -9 5 1506 573 138 0 0 chr5 120756714 120756808 -31780451 + (TAG)n Simple_repeat Simple_repeat 2 95 0 5 1506 424 215 5 13 chr5 120756832 120756951 -31780308 + B1F SINE Alu 14 149 -1 5 1506 250 298 59 74 chr5 120757228 120757431 -31779828 + RLTR25B LTR ERVK 307 506 -522 5 1506 571 256 23 0 chr5 120757338 120757471 -31779788 + B1F SINE Alu 13 148 -1 5 1506 289 289 13 0 chr5 120757481 120757557 -31779702 + ID4_ SINE ID 2 78 -5 5 1506 361 36 18 18 chr5 120757699 120757755 -31779504 + (TTTG)n Simple_repeat Simple_repeat 4 59 0 5 1506 681 55 0 0 chr5 120757782 120757873 -31779386 - B1_Mus2 SINE Alu 0 147 57 5 1506 564 202 128 62 chr5 120758109 120758288 -31778971 + B2_Mm2 SINE B2 1 191 -4 5 1506 563 250 0 46 chr5 120758284 120758414 -31778845 + B4A SINE B4 83 206 -86 5 1506 938 215 34 14 chr5 120758426 120758634 -31778625 + B3 SINE B2 1 212 -4 5 1506 1152 43 7 0 chr5 120758637 120758776 -31778483 + B1_Mus1 SINE Alu 2 141 -7 5 1506 615 14 0 0 chr5 120758780 120758852 -31778407 + (CATA)n Simple_repeat Simple_repeat 2 73 0 5 1506 625 277 0 25 chr5 120758877 120759036 -31778223 + RSINE1 SINE B4 9 163 -2 5 1506 333 0 0 0 chr5 120759047 120759084 -31778175 + (TAA)n Simple_repeat Simple_repeat 3 39 0 5 1506 249 33 0 0 chr5 120759159 120759189 -31778070 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 5 1506 1071 116 0 0 chr5 120759230 120759377 -31777882 - B1_Mus1 SINE Alu -1 147 1 5 1506 199 167 0 0 chr5 120759537 120759573 -31777686 + L2b LINE L2 3337 3372 -3 5 1506 925 329 108 26 chr5 120759811 120760467 -31776792 + L1MC3 LINE L1 5859 6568 -1217 5 1506 252 230 92 26 chr5 120760577 120760653 -31776606 + ID4_ SINE ID 1 81 -2 5 1506 946 142 30 0 chr5 120760668 120761016 -31776243 + (TAGA)n Simple_repeat Simple_repeat 1 358 0 5 1506 265 161 58 0 chr5 120761041 120761128 -31776131 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 5 1506 609 152 0 97 chr5 120761147 120761271 -31775988 + PB1D9 SINE Alu 9 120 0 5 1506 346 292 150 1 chr5 120761364 120761534 -31775725 + L1MC3 LINE L1 6668 6917 -1125 5 1506 277 350 28 28 chr5 120761528 120761710 -31775549 + L1MC3 LINE L1 7212 7393 -392 5 1506 340 256 93 8 chr5 120761970 120762088 -31775171 + B3 SINE B2 2 129 -87 5 1506 351 312 16 0 chr5 120762475 120762600 -31774659 + B3 SINE B2 90 216 0 5 1506 406 243 9 27 chr5 120762779 120762889 -31774370 + B4 SINE B4 183 290 -2 5 1506 222 234 0 0 chr5 120763915 120763962 -31773297 + L2c LINE L2 3336 3382 -5 5 1506 369 0 0 0 chr5 120764410 120764451 -31772808 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1506 943 246 77 42 chr5 120764451 120764710 -31772549 - B4 SINE B4 -23 269 2 5 1506 24 0 0 0 chr5 120766240 120766264 -31770995 + AT_rich Low_complexity Low_complexity 1 24 0 5 1506 865 221 31 10 chr5 120766271 120766463 -31770796 - B3A SINE B2 0 198 3 5 1506 1886 202 77 13 chr5 120766651 120767043 -31770216 - MTD LTR MaLR 0 419 3 5 1506 220 152 0 0 chr5 120768309 120768342 -31768917 - L2c LINE L2 -13 3374 3342 5 1506 360 0 0 0 chr5 120768404 120768444 -31768815 + (GA)n Simple_repeat Simple_repeat 1 40 0 5 1506 396 0 0 0 chr5 120768732 120768776 -31768483 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 5 1506 660 196 0 0 chr5 120769721 120769900 -31767359 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1506 721 167 0 27 chr5 120769926 120770111 -31767148 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1506 452 231 6 0 chr5 120770150 120770306 -31766953 + (CA)n Simple_repeat Simple_repeat 1 157 0 5 1506 547 206 6 6 chr5 120770344 120770505 -31766754 + (CA)n Simple_repeat Simple_repeat 1 161 0 5 1506 345 47 0 0 chr5 120770834 120770877 -31766382 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1506 231 298 67 62 chr5 120770920 120770933 -31766326 + B2_Mm2 SINE B2 11 67 -128 5 1506 734 197 0 35 chr5 120770933 120771075 -31766184 + RSINE1 SINE B4 29 165 0 5 1506 231 298 67 62 chr5 120771075 120771099 -31766160 + B2_Mm2 SINE B2 68 190 -5 5 1506 442 257 9 9 chr5 120771411 120771521 -31765738 + PB1D7 SINE Alu 10 119 -1 5 1506 225 0 0 0 chr5 120771649 120771674 -31765585 + (TCCA)n Simple_repeat Simple_repeat 4 28 0 5 1506 21 0 0 0 chr5 120772964 120772985 -31764274 + GC_rich Low_complexity Low_complexity 1 21 0 5 1506 197 340 20 20 chr5 120773290 120773389 -31763870 + L2b LINE L2 3008 3106 -269 5 1506 391 267 24 48 chr5 120773813 120773939 -31763320 + MTEa LTR MaLR 251 373 -6 5 1506 243 0 0 0 chr5 120774194 120774221 -31763038 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1506 868 159 8 84 chr5 120774277 120774519 -31762740 + ORR1A2 LTR MaLR 23 218 -128 5 1506 480 176 63 78 chr5 120774513 120774655 -31762604 - B3A SINE B2 -57 141 2 5 1506 267 93 0 0 chr5 120775032 120775075 -31762184 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1506 1924 80 3 143 chr5 120776138 120776502 -31760757 + ORR1A2 LTR MaLR 1 313 -14 5 1506 474 260 165 25 chr5 120776516 120776674 -31760585 - B4A SINE B4 -7 285 106 5 1506 1012 113 0 27 chr5 120776870 120777016 -31760243 + B1_Mur4 SINE Alu 3 144 -6 5 1506 396 0 0 0 chr5 120777237 120777281 -31759978 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1506 890 224 20 0 chr5 120777821 120778022 -31759237 + B3 SINE B2 5 209 -7 5 1506 743 167 7 7 chr5 120778179 120778318 -31758941 + B1_Mus1 SINE Alu 5 143 -5 5 1506 1305 91 0 0 chr5 120778328 120778868 -31758391 + (GGAA)n Simple_repeat Simple_repeat 1 540 0 5 1506 542 302 60 107 chr5 120778890 120778980 -31758279 + B4A SINE B4 1 91 -201 5 1506 333 0 0 0 chr5 120778980 120779017 -31758242 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1506 542 302 60 107 chr5 120779017 120779158 -31758101 + B4A SINE B4 92 219 -73 5 1506 631 216 52 0 chr5 120779158 120779292 -31757967 + B1_Mur1 SINE Alu 4 144 -5 5 1506 542 302 60 107 chr5 120779292 120779359 -31757900 + B4A SINE B4 220 286 -6 5 1506 231 36 0 0 chr5 120779375 120779403 -31757856 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1506 429 36 0 0 chr5 120779564 120779619 -31757640 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1506 369 0 0 0 chr5 120780179 120780220 -31757039 + (TC)n Simple_repeat Simple_repeat 1 41 0 5 1506 257 0 30 0 chr5 120780817 120780850 -31756409 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 5 1506 189 195 0 0 chr5 120780956 120780997 -31756262 + C-rich Low_complexity Low_complexity 2 42 0 5 1506 814 263 30 5 chr5 120781179 120781378 -31755881 + ID_B1 SINE B4 1 204 -20 5 1506 286 351 30 0 chr5 120781264 120781395 -31755864 + B1_Mur3 SINE Alu 10 144 -5 5 1506 236 100 25 0 chr5 120781425 120781465 -31755794 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5 1506 447 296 24 0 chr5 120781492 120781617 -31755642 - RSINE1 SINE B4 0 165 38 5 1506 2063 98 20 63 chr5 120781621 120781969 -31755290 - ORR1A1 LTR MaLR -8 338 6 5 1506 237 344 16 0 chr5 120782436 120782561 -31754698 - L1M5 LINE L1 -360 5764 5638 5 1506 846 237 23 0 chr5 120782854 120783031 -31754228 - B3 SINE B2 -34 182 2 5 1506 341 257 38 9 chr5 120783419 120783561 -31753698 - L1PB4 LINE L1 -341 5956 5798 5 1506 344 155 14 0 chr5 120783600 120783671 -31753588 + (TA)n Simple_repeat Simple_repeat 2 73 0 5 1506 21 57 0 0 chr5 120783737 120783772 -31753487 + AT_rich Low_complexity Low_complexity 1 35 0 5 1506 180 0 0 0 chr5 120783845 120783865 -31753394 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1506 28 71 0 0 chr5 120783882 120783938 -31753321 + AT_rich Low_complexity Low_complexity 1 56 0 5 1506 768 279 24 44 chr5 120784037 120784333 -31752926 + B4A SINE B4 1 290 -2 5 1506 296 326 8 0 chr5 120784337 120784466 -31752793 + (CA)n Simple_repeat Simple_repeat 1 130 0 5 1506 251 237 9 0 chr5 120784485 120784599 -31752660 + (CA)n Simple_repeat Simple_repeat 2 116 0 5 1506 393 297 0 0 chr5 120784612 120784947 -31752312 + (CA)n Simple_repeat Simple_repeat 1 335 0 5 1506 559 238 146 0 chr5 120785447 120785598 -31751661 - ID_B1 SINE B4 -20 204 32 5 1506 260 293 0 0 chr5 120785609 120785691 -31751568 - MIRc SINE MIR -106 162 81 5 1506 669 220 0 9 chr5 120786021 120786350 -31750909 + CT-rich Low_complexity Low_complexity 1 325 0 5 1506 455 223 19 13 chr5 120786364 120786523 -31750736 + CT-rich Low_complexity Low_complexity 2 161 0 5 1506 648 191 0 0 chr5 120787149 120787317 -31749942 + (TGGA)n Simple_repeat Simple_repeat 1 168 0 5 1506 387 0 0 0 chr5 120788577 120788620 -31748639 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1506 425 236 180 41 chr5 120788636 120788808 -31748451 + ID_B1 SINE B4 29 224 0 5 1506 252 284 54 0 chr5 120788811 120788885 -31748374 + BC1_Mm scRNA scRNA 2 79 -73 5 1506 329 226 9 56 chr5 120788965 120789073 -31748186 + CT-rich Low_complexity Low_complexity 5 107 0 5 1506 450 0 0 0 chr5 120789145 120789195 -31748064 + (CTATG)n Simple_repeat Simple_repeat 3 52 0 5 1506 411 333 8 0 chr5 120789575 120789695 -31747564 - RSINE1 SINE B4 -38 127 7 5 1506 442 290 0 0 chr5 120789853 120789960 -31747299 - MIRb SINE MIR -131 137 31 5 1506 190 176 56 56 chr5 120790679 120790751 -31746508 + MIRc SINE MIR 81 152 -56 5 1506 609 126 23 45 chr5 120797621 120797754 -31739505 - URR1B DNA MER1_type -11 214 85 6 1506 589 232 10 7 chr5 120798777 120799081 -31738178 + (CATA)n Simple_repeat Simple_repeat 1 305 0 6 1506 357 204 10 30 chr5 120799226 120799327 -31737932 + RLTR15 LTR ERVK 33 131 -228 6 1506 29 28 0 0 chr5 120799560 120799596 -31737663 + AT_rich Low_complexity Low_complexity 1 36 0 6 1506 1127 134 62 0 chr5 120799646 120799840 -31737419 - RMER19C LTR ERVK -12 599 394 6 1506 688 239 0 0 chr5 120801328 120801458 -31735801 + RSINE1 SINE B4 5 134 -31 6 1506 423 0 0 0 chr5 120801460 120801507 -31735752 + (CA)n Simple_repeat Simple_repeat 2 48 0 6 1506 376 247 35 0 chr5 120801531 120801616 -31735643 - ID_B1 SINE B4 -8 216 129 6 1506 203 292 78 17 chr5 120802936 120803051 -31734208 - MIRc SINE MIR -131 137 16 6 1506 232 194 31 0 chr5 120803214 120803312 -31733947 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 6 1506 219 273 35 26 chr5 120803366 120803479 -31733780 + CT-rich Low_complexity Low_complexity 2 115 0 6 1506 245 294 22 0 chr5 120803714 120803806 -31733453 + G-rich Low_complexity Low_complexity 3 96 0 6 1506 242 219 194 20 chr5 120804323 120804421 -31732838 + MIRb SINE MIR 40 154 -114 6 1506 675 37 0 0 chr5 120804805 120804887 -31732372 + (GA)n Simple_repeat Simple_repeat 2 83 0 6 1506 806 165 202 11 chr5 120804887 120805065 -31732194 + B3 SINE B2 5 216 0 6 1506 708 175 25 14 chr5 120805083 120805440 -31731819 + (TAGA)n Simple_repeat Simple_repeat 1 361 0 6 1506 201 241 0 0 chr5 120805442 120805496 -31731763 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 6 1506 358 323 97 45 chr5 120805571 120805879 -31731380 - L1MD2 LINE L1 -45 6314 5991 6 1506 219 273 214 18 chr5 120806522 120806634 -31730625 - RSINE1 SINE B4 -28 137 4 6 1506 626 228 0 22 chr5 120806828 120807012 -31730247 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1506 183 129 0 0 chr5 120807039 120807070 -31730189 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1506 904 168 6 12 chr5 120807318 120807487 -31729772 - URR1A DNA MER1_type 0 226 59 6 1506 519 237 181 0 chr5 120807952 120808129 -31729130 - ID_B1 SINE B4 -14 210 2 6 1506 201 238 8 68 chr5 120808833 120808924 -31728335 - MIR SINE MIR -112 156 72 6 1506 380 181 25 23 chr5 120808929 120809016 -31728243 + ID_B1 SINE B4 36 123 -169 6 1506 343 319 77 24 chr5 120810721 120810891 -31726368 - MER5A DNA MER1_type -2 187 9 6 1506 273 318 23 0 chr5 120810940 120811028 -31726231 + MIRm SINE MIR 82 171 -105 6 1506 1106 113 0 7 chr5 120811258 120811547 -31725712 + (TCTA)n Simple_repeat Simple_repeat 1 286 0 6 1506 622 222 37 7 chr5 120811548 120811684 -31725575 - B1_Mur2 SINE Alu -8 141 2 6 1506 870 237 14 9 chr5 120812906 120813127 -31724132 + ID_B1 SINE B4 2 223 -1 6 1506 907 189 15 3 chr5 120813129 120813432 -31723827 + GA-rich Low_complexity Low_complexity 1 306 0 6 1506 189 200 133 0 chr5 120813451 120813496 -31723763 - MIR SINE MIR -107 155 105 6 1506 414 118 32 0 chr5 120814514 120814607 -31722652 + (TGGA)n Simple_repeat Simple_repeat 4 99 0 6 1506 316 280 80 0 chr5 120815195 120815295 -31721964 + MER3 DNA MER1_type 42 149 -60 6 1506 184 291 161 11 chr5 120815468 120815555 -31721704 - MIRb SINE MIR -71 197 98 6 1506 432 0 0 0 chr5 120816307 120816355 -31720904 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1506 207 0 0 0 chr5 120816386 120816409 -31720850 + (TG)n Simple_repeat Simple_repeat 1 23 0 6 1506 324 0 0 0 chr5 120818387 120818423 -31718836 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1506 192 77 0 0 chr5 120818423 120818448 -31718811 + (CG)n Simple_repeat Simple_repeat 2 27 0 6 1506 700 345 90 53 chr5 120819005 120819524 -31717735 + MLT1F2 LTR MaLR 24 678 -2 6 1506 334 333 41 28 chr5 120819529 120819674 -31717585 + MIR SINE MIR 54 200 -62 6 1506 1252 110 349 0 chr5 120819982 120820200 -31717059 - RMER6A LTR ERVK -460 296 3 6 1506 21 0 0 0 chr5 120820222 120820243 -31717016 + AT_rich Low_complexity Low_complexity 1 21 0 6 1506 277 209 14 56 chr5 120820247 120820318 -31716941 + MLT1G LTR MaLR 219 286 -305 6 1506 356 326 168 11 chr5 120820641 120820926 -31716333 + Lx8 LINE L1 7144 7473 0 6 1506 345 235 0 0 chr5 120820944 120821029 -31716230 + GA-rich Low_complexity Low_complexity 3 87 0 6 1506 738 219 0 0 chr5 120821031 120821168 -31716091 + B1_Mur2 SINE Alu 1 137 -12 6 1506 486 49 0 0 chr5 120821168 120821229 -31716030 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1506 186 43 0 0 chr5 120821515 120821538 -31715721 + (CGGG)n Simple_repeat Simple_repeat 4 26 0 6 1506 321 258 126 25 chr5 120821972 120822131 -31715128 - MIRb SINE MIR -91 177 3 6 1506 203 224 0 0 chr5 120822207 120822256 -31715003 - MIRb SINE MIR -6 262 214 6 1506 843 186 8 2 chr5 120822596 120823126 -31714133 + (TCCA)n Simple_repeat Simple_repeat 1 533 0 6 1506 351 0 0 0 chr5 120823847 120823886 -31713373 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1506 262 184 0 0 chr5 120824189 120824238 -31713021 - MLT1F2 LTR MaLR 0 560 512 6 1506 599 222 136 45 chr5 120824271 120824469 -31712790 - B4A SINE B4 -73 219 4 6 1506 1263 88 0 0 chr5 120825038 120825309 -31711950 + (TCC)n Simple_repeat Simple_repeat 1 271 0 6 1506 225 203 6 22 chr5 120825698 120825758 -31711501 + MIR SINE MIR 100 153 -123 6 1506 262 329 25 0 chr5 120826518 120826597 -31710662 - Tigger5 DNA MER2_type 0 2406 2326 6 1506 302 213 40 0 chr5 120827019 120827094 -31710165 + MIR SINE MIR 34 111 -151 6 1506 700 155 7 7 chr5 120827459 120827602 -31709657 + GA-rich Low_complexity Low_complexity 1 143 0 6 1506 194 337 11 11 chr5 120828013 120828100 -31709159 - MER5A DNA MER1_type -6 183 97 6 1506 776 216 6 18 chr5 120828379 120828544 -31708715 + RSINE1 SINE B4 3 165 0 6 1506 917 178 5 57 chr5 120828570 120828779 -31708480 + RCHARR1 DNA MER1_type 656 853 -121 6 1506 459 0 0 0 chr5 120828784 120828835 -31708424 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1506 609 259 14 0 chr5 120828974 120829113 -31708146 - RSINE1 SINE B4 -22 143 3 6 1506 540 320 38 55 chr5 120829113 120829347 -31707912 - B4A SINE B4 -62 230 1 6 1506 346 257 73 9 chr5 120829351 120829461 -31707798 + RCHARR1 DNA MER1_type 842 958 -16 6 1506 406 157 198 22 chr5 120829462 120829553 -31707706 - B1_Mus1 SINE Alu -40 108 2 6 1506 632 108 25 7 chr5 120829617 120829736 -31707523 - B1_Mus2 SINE Alu 0 150 30 6 1506 614 229 19 9 chr5 120829957 120830125 -31707134 - B3 SINE B2 -17 178 1 6 1506 357 271 205 71 chr5 120830541 120830795 -31706464 + B4 SINE B4 5 292 0 6 1506 232 302 42 0 chr5 120830813 120830932 -31706327 + L2b LINE L2 3013 3136 -239 6 1506 268 303 141 0 chr5 120831002 120831101 -31706158 + L2b LINE L2 3263 3375 0 6 1506 205 368 0 0 chr5 120831736 120831831 -31705428 - MIR SINE MIR -131 131 37 6 1506 393 311 4 0 chr5 120831970 120832246 -31705013 + (TATG)n Simple_repeat Simple_repeat 1 277 0 6 1506 861 247 65 107 chr5 120832254 120832489 -31704770 - B4 SINE B4 0 292 69 6 1506 225 0 0 0 chr5 120832489 120832514 -31704745 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 1506 861 247 65 107 chr5 120832514 120832568 -31704691 - B4 SINE B4 -224 68 15 6 1506 312 255 32 11 chr5 120833568 120833663 -31703596 + MIRb SINE MIR 54 150 -118 6 1506 462 218 21 50 chr5 120833673 120833813 -31703446 + B1F SINE Alu 14 149 0 6 1506 346 257 0 0 chr5 120833819 120833889 -31703370 + ID4 SINE ID 5 74 -9 6 1506 871 132 21 0 chr5 120833995 120834139 -31703120 - B1_Mus2 SINE Alu 0 147 1 6 1506 475 291 14 14 chr5 120834229 120834284 -31702975 + ID_B1 SINE B4 80 134 -90 6 1506 744 286 30 0 chr5 120834284 120834483 -31702776 + B3 SINE B2 1 205 -11 6 1506 475 291 14 14 chr5 120834483 120834570 -31702689 + ID_B1 SINE B4 135 222 -2 6 1506 222 118 0 0 chr5 120834974 120835008 -31702251 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 6 1506 857 163 39 8 chr5 120835013 120835600 -31701659 + (TGGA)n Simple_repeat Simple_repeat 1 605 0 6 1506 2595 49 6 6 chr5 120837506 120837852 -31699407 - ORR1A1 LTR MaLR 0 346 1 6 1506 251 123 35 0 chr5 120837925 120837982 -31699277 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 6 1506 461 274 171 12 chr5 120837991 120838161 -31699098 - B3A SINE B2 0 198 2 6 1506 558 284 57 61 chr5 120838161 120838320 -31698939 - B4 SINE B4 -67 225 68 6 1506 441 0 0 0 chr5 120838320 120838369 -31698890 + (TGGA)n Simple_repeat Simple_repeat 2 50 0 6 1506 180 0 0 0 chr5 120838369 120838389 -31698870 + (CTTG)n Simple_repeat Simple_repeat 1 20 0 6 1506 558 284 57 61 chr5 120838389 120838454 -31698805 - B4 SINE B4 -225 67 2 6 1506 326 242 141 0 chr5 120838501 120838600 -31698659 - MER58A DNA MER1_type -106 118 6 6 1506 385 278 62 44 chr5 120838626 120838739 -31698520 + B1F1 SINE Alu 3 117 0 6 1506 336 191 69 201 chr5 120839295 120839439 -31697820 - ID_B1 SINE B4 -9 215 91 6 1506 330 298 64 0 chr5 120839695 120839836 -31697423 + MER20 DNA MER1_type 25 174 -45 6 1506 818 183 0 74 chr5 120840385 120840574 -31696685 - URR1B DNA MER1_type 0 225 51 6 1506 281 281 100 2 chr5 120840741 120840885 -31696374 - L2c LINE L2 -264 3123 2961 6 1506 383 315 9 27 chr5 120840946 120841057 -31696202 + ID_B1 SINE B4 84 192 -32 6 1506 638 340 75 39 chr5 120841069 120841348 -31695911 + B4 SINE B4 4 292 0 6 1506 350 274 0 0 chr5 120841929 120842013 -31695246 - MIR SINE MIR -129 133 50 6 1506 258 32 0 0 chr5 120842170 120842201 -31695058 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1506 1173 58 0 0 chr5 120842964 120843101 -31694158 - B1_Mus1 SINE Alu -10 138 2 6 1506 554 266 0 0 chr5 120843114 120843238 -31694021 - ID_B1 SINE B4 -8 216 93 6 1506 372 59 0 0 chr5 120843238 120843289 -31693970 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1506 306 357 23 23 chr5 120845405 120845623 -31691636 + L1MC4 LINE L1 6762 6979 -1063 7 1506 567 185 13 7 chr5 120845691 120845843 -31691416 + (TAGA)n Simple_repeat Simple_repeat 1 153 0 7 1506 325 321 90 25 chr5 120845845 120846123 -31691136 + L1MC4 LINE L1 7068 7363 -679 7 1506 784 230 141 5 chr5 120846253 120846445 -31690814 - ID_B1 SINE B4 -5 219 2 7 1506 609 152 18 18 chr5 120846911 120847025 -31690234 + B1_Mur3 SINE Alu 35 148 -1 7 1506 1213 54 0 0 chr5 120847088 120847235 -31690024 + B1_Mus1 SINE Alu 2 148 0 7 1506 344 268 24 0 chr5 120847394 120847476 -31689783 + L2a LINE L2 3343 3426 0 7 1506 477 50 0 0 chr5 120847713 120847773 -31689486 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 7 1506 271 127 32 0 chr5 120847781 120847844 -31689415 + GA-rich Low_complexity Low_complexity 2 66 0 7 1506 478 128 40 23 chr5 120847857 120848033 -31689226 + GA-rich Low_complexity Low_complexity 2 180 0 7 1506 212 86 29 0 chr5 120848035 120848070 -31689189 + (GGA)n Simple_repeat Simple_repeat 1 36 0 7 1506 206 286 0 0 chr5 120848089 120848138 -31689121 + C-rich Low_complexity Low_complexity 3 51 0 7 1507 214 182 30 0 chr5 120848812 120848878 -31688381 + GA-rich Low_complexity Low_complexity 2 69 0 7 1507 237 336 48 0 chr5 120848893 120848997 -31688262 + L2a LINE L2 3305 3413 -13 7 1507 261 83 0 0 chr5 120848998 120849034 -31688225 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 7 1507 184 200 25 0 chr5 120849538 120849578 -31687681 - MIR SINE MIR -63 145 105 7 1507 398 245 39 10 chr5 120850404 120850507 -31686752 + PB1D10 SINE Alu 5 110 -7 7 1507 529 269 19 37 chr5 120850513 120850675 -31686584 + RSINE1 SINE B4 2 160 -5 7 1507 378 259 62 48 chr5 120851344 120851490 -31685769 + MIR SINE MIR 47 194 -68 7 1507 279 0 0 0 chr5 120851597 120851628 -31685631 + (CGGGG)n Simple_repeat Simple_repeat 1 31 0 7 1507 631 285 26 65 chr5 120851628 120851857 -31685402 + B4A SINE B4 11 230 -62 7 1507 417 39 0 0 chr5 120851884 120851935 -31685324 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1507 207 0 0 0 chr5 120851960 120851983 -31685276 + (TC)n Simple_repeat Simple_repeat 1 23 0 7 1507 360 0 0 0 chr5 120851983 120852022 -31685237 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1507 325 406 6 18 chr5 120852585 120852748 -31684511 + (CACG)n Simple_repeat Simple_repeat 3 163 0 7 1507 413 317 158 29 chr5 120852871 120853150 -31684109 - MLT1D LTR MaLR -124 381 67 7 1507 501 305 13 0 chr5 120853726 120853877 -31683382 + B4A SINE B4 1 153 -139 7 1507 209 269 0 0 chr5 120853978 120854030 -31683229 + (CA)n Simple_repeat Simple_repeat 2 53 0 7 1507 324 0 0 0 chr5 120854040 120854076 -31683183 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 7 1507 615 206 0 0 chr5 120854272 120854452 -31682807 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1507 490 305 45 0 chr5 120854498 120854652 -31682607 - RSINE1 SINE B4 0 165 5 7 1507 271 352 175 7 chr5 120854657 120855063 -31682196 - L2 LINE L2 -340 3079 2606 7 1507 228 35 0 0 chr5 120855112 120855141 -31682118 + (CCCCCA)n Simple_repeat Simple_repeat 6 34 0 7 1507 378 283 86 39 chr5 120855461 120855666 -31681593 + MIRb SINE MIR 25 239 -29 7 1507 697 294 0 0 chr5 120856117 120856280 -31680979 + RSINE1 SINE B4 2 164 -1 7 1507 214 267 0 0 chr5 120856290 120856335 -31680924 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1507 681 13 0 0 chr5 120856596 120856674 -31680585 + (CA)n Simple_repeat Simple_repeat 2 79 0 7 1507 453 36 0 0 chr5 120856906 120856961 -31680298 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 7 1507 2018 90 93 10 chr5 120856968 120857270 -31679989 - ORR1A4 LTR MaLR -1 328 2 7 1507 381 43 0 0 chr5 120857270 120857317 -31679942 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 7 1507 999 107 11 11 chr5 120857317 120857495 -31679764 + (CATA)n Simple_repeat Simple_repeat 2 180 0 7 1507 290 292 62 6 chr5 120857500 120857679 -31679580 - RLTR21 LTR ERVK -311 1261 1073 7 1507 251 264 37 37 chr5 120857679 120857813 -31679446 + (TAGA)n Simple_repeat Simple_repeat 2 135 0 7 1507 430 138 264 101 chr5 120858266 120858289 -31678970 - B1_Mur4 SINE Alu 0 150 138 7 1507 225 94 0 0 chr5 120858289 120858321 -31678938 + (TCTG)n Simple_repeat Simple_repeat 3 34 0 7 1507 430 138 264 101 chr5 120858321 120858426 -31678833 - B1_Mur4 SINE Alu -13 137 1 7 1507 420 198 26 86 chr5 120858807 120858923 -31678336 - PB1D9 SINE Alu 0 120 12 7 1507 474 49 0 0 chr5 120859302 120859363 -31677896 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1507 684 216 238 7 chr5 120861404 120861587 -31675672 - B3 SINE B2 0 216 11 7 1507 717 177 0 37 chr5 120861766 120861901 -31675358 + B3 SINE B2 1 130 -86 7 1507 234 0 0 0 chr5 120861904 120861930 -31675329 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 7 1507 27 0 0 0 chr5 120861951 120861978 -31675281 + AT_rich Low_complexity Low_complexity 1 27 0 7 1507 263 333 32 0 chr5 120862001 120862094 -31675165 + MIR SINE MIR 74 169 -93 7 1507 326 227 6 11 chr5 120862253 120862365 -31674894 + B1F SINE Alu 23 149 0 7 1507 309 328 8 0 chr5 120862516 120862650 -31674609 + (CA)n Simple_repeat Simple_repeat 2 136 0 7 1507 635 306 101 0 chr5 120862987 120863206 -31674053 + B4A SINE B4 8 248 -44 7 1507 422 219 45 122 chr5 120863242 120863398 -31673861 + MER44A DNA MER2_type 93 236 -103 7 1507 262 348 26 9 chr5 120863399 120863515 -31673744 - RMER15 LTR ERVL -3 572 455 7 1507 394 212 24 0 chr5 120863620 120863705 -31673554 + B3A SINE B2 94 180 -18 7 1507 558 29 0 0 chr5 120864473 120864541 -31672718 + (GA)n Simple_repeat Simple_repeat 1 68 0 7 1507 269 241 4 75 chr5 120865052 120865277 -31671982 + (TTCA)n Simple_repeat Simple_repeat 1 209 0 7 1507 331 139 42 0 chr5 120865349 120865421 -31671838 + (TTCA)n Simple_repeat Simple_repeat 4 78 0 7 1507 187 317 19 38 chr5 120865841 120865946 -31671313 - MIR SINE MIR -115 147 45 7 1507 209 270 107 13 chr5 120866540 120866615 -31670644 - MIR3 SINE MIR -49 159 78 7 1507 338 324 106 21 chr5 120866830 120866972 -31670287 - RSINE1 SINE B4 0 165 12 7 1507 545 120 22 54 chr5 120867453 120867638 -31669621 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 7 1507 326 292 56 0 chr5 120867670 120867759 -31669500 - B3A SINE B2 -100 98 5 7 1507 917 229 24 14 chr5 120867793 120868006 -31669253 + B3 SINE B2 2 216 0 7 1507 207 179 0 0 chr5 120868029 120868044 -31669215 + A-rich Low_complexity Low_complexity 1 15 0 7 1507 671 133 61 17 chr5 120868044 120868159 -31669100 + PB1D9 SINE Alu 1 120 0 7 1507 207 179 0 0 chr5 120868159 120868182 -31669077 + A-rich Low_complexity Low_complexity 16 38 0 7 1507 242 273 26 0 chr5 120868855 120868932 -31668327 + ID4 SINE ID 4 82 -1 7 1507 414 0 0 0 chr5 120868976 120869022 -31668237 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1507 740 276 11 0 chr5 120869038 120869219 -31668040 + ID_B1 SINE B4 41 223 -1 7 1507 399 262 0 61 chr5 120869210 120869324 -31667935 + ID_B1 SINE B4 70 176 -48 7 1507 428 270 0 18 chr5 120869234 120869347 -31667912 + PB1D10 SINE Alu 7 117 0 7 1507 193 365 56 9 chr5 120869392 120869500 -31667759 + L2a LINE L2 3287 3399 -27 7 1507 936 265 40 73 chr5 120869949 120870039 -31667220 + B4A SINE B4 2 87 -205 7 1507 456 19 0 0 chr5 120870039 120870092 -31667167 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 7 1507 936 265 40 73 chr5 120870092 120870302 -31666957 + B4A SINE B4 88 292 0 7 1507 326 337 65 27 chr5 120870628 120870833 -31666426 - MIR SINE MIR -46 230 5 7 1507 720 131 150 52 chr5 120870875 120871028 -31666231 - URR1A DNA MER1_type -1 225 58 7 1507 346 335 99 18 chr5 120871407 120871629 -31665630 - L2a LINE L2 0 3426 3187 7 1507 512 369 97 19 chr5 120871723 120872196 -31665063 - L2a LINE L2 -354 3065 2556 7 1507 929 70 0 0 chr5 120872547 120872675 -31664584 + B1_Mus1 SINE Alu 21 148 0 7 1507 288 91 0 0 chr5 120872700 120872744 -31664515 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1507 752 153 213 38 chr5 120873362 120873545 -31663714 + B3 SINE B2 1 215 -1 7 1507 669 41 10 20 chr5 120873958 120874057 -31663202 + (TAGA)n Simple_repeat Simple_repeat 2 99 0 7 1507 204 174 21 21 chr5 120874312 120874359 -31662900 + GA-rich Low_complexity Low_complexity 3 49 0 7 1507 189 132 0 0 chr5 120874600 120874638 -31662621 + (A)n Simple_repeat Simple_repeat 1 38 0 7 1507 28 0 0 0 chr5 120875569 120875597 -31661662 + GC_rich Low_complexity Low_complexity 1 28 0 7 1507 318 205 0 0 chr5 120875950 120876028 -31661231 + (CA)n Simple_repeat Simple_repeat 2 79 0 7 1507 1029 79 0 0 chr5 120876119 120876259 -31661000 + (GA)n Simple_repeat Simple_repeat 1 140 0 7 1507 873 0 0 0 chr5 120876469 120876566 -31660693 + (GAGAA)n Simple_repeat Simple_repeat 1 97 0 7 1507 205 152 0 0 chr5 120878136 120878169 -31659090 + C-rich Low_complexity Low_complexity 3 35 0 7 1507 1038 60 0 0 chr5 120879322 120879456 -31657803 + (GGA)n Simple_repeat Simple_repeat 1 134 0 7 1507 219 250 0 67 chr5 120879571 120879631 -31657628 + polypurine Low_complexity Low_complexity 4 59 0 7 1507 384 22 0 0 chr5 120879951 120879996 -31657263 + (CACTA)n Simple_repeat Simple_repeat 3 47 0 7 1507 183 42 0 0 chr5 120880296 120880320 -31656939 + (CA)n Simple_repeat Simple_repeat 2 25 0 7 1507 792 32 0 0 chr5 120880446 120880541 -31656718 + (GAAA)n Simple_repeat Simple_repeat 3 97 0 7 1507 246 136 0 0 chr5 120880589 120880633 -31656626 + (A)n Simple_repeat Simple_repeat 1 44 0 7 1507 21 36 0 0 chr5 120882260 120882288 -31654971 + GC_rich Low_complexity Low_complexity 1 28 0 7 1507 459 0 0 0 chr5 120883168 120883219 -31654040 + (T)n Simple_repeat Simple_repeat 1 51 0 7 1507 414 0 0 0 chr5 120883846 120883892 -31653367 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1507 342 67 0 0 chr5 120884036 120884081 -31653178 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 8 1507 504 0 0 0 chr5 120886684 120886740 -31650519 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1507 441 0 0 0 chr5 120886740 120886788 -31650471 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1507 369 0 0 0 chr5 120887488 120887529 -31649730 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1507 519 31 0 0 chr5 120888959 120889024 -31648235 + (CA)n Simple_repeat Simple_repeat 1 65 0 8 1507 828 151 0 0 chr5 120890675 120890821 -31646438 + GA-rich Low_complexity Low_complexity 2 147 0 8 1507 246 117 25 38 chr5 120891332 120891412 -31645847 + A-rich Low_complexity Low_complexity 4 82 0 8 1507 1034 198 54 45 chr5 120891570 120891792 -31645467 + URR1B DNA MER1_type 1 224 -1 8 1507 555 16 0 0 chr5 120891851 120891915 -31645344 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1507 447 246 87 9 chr5 120891917 120892032 -31645227 - RSINE1 SINE B4 -40 125 2 8 1507 524 216 0 10 chr5 120892192 120892290 -31644969 + PB1D10 SINE Alu 14 110 -7 8 1507 232 250 239 9 chr5 120892290 120892301 -31644958 + B4A SINE B4 99 232 -60 8 1507 918 179 10 55 chr5 120892317 120892518 -31644741 - B2_Mm2 SINE B2 0 195 4 8 1507 345 159 0 0 chr5 120892726 120892789 -31644470 + (TTG)n Simple_repeat Simple_repeat 1 63 0 8 1507 380 243 125 10 chr5 120892790 120892894 -31644365 - PB1D7 SINE Alu -1 119 4 8 1507 342 324 58 45 chr5 120892894 120892965 -31644294 - ID_B1 SINE B4 -132 92 20 8 1507 1795 164 9 0 chr5 120893487 120893800 -31643459 - Lx4A LINE L1 -121 6937 6657 8 1507 946 76 7 46 chr5 120893936 120894088 -31643171 + URR1A DNA MER1_type 81 226 0 8 1507 254 159 0 0 chr5 120894281 120894325 -31642934 - MIRc SINE MIR -143 125 82 8 1507 291 321 0 36 chr5 120894553 120894663 -31642596 + G-rich Low_complexity Low_complexity 1 106 0 8 1507 284 240 10 0 chr5 120894822 120894922 -31642337 + (CA)n Simple_repeat Simple_repeat 1 101 0 8 1507 722 174 6 0 chr5 120895591 120895763 -31641496 + (TGGA)n Simple_repeat Simple_repeat 4 176 0 8 1507 388 246 11 0 chr5 120895781 120895956 -31641303 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 8 1507 319 173 48 29 chr5 120896087 120896176 -31641083 + PB1D10 SINE Alu 18 108 -9 8 1507 1435 65 11 26 chr5 120896296 120896487 -31640772 + B2_Mm2 SINE B2 1 188 -7 8 1507 728 182 6 19 chr5 120896717 120896874 -31640385 + B3 SINE B2 2 159 -34 8 1507 198 0 0 0 chr5 120896874 120896896 -31640363 + (CAGA)n Simple_repeat Simple_repeat 3 24 0 8 1507 418 269 59 64 chr5 120896896 120896925 -31640334 + B2_Mm1a SINE B2 160 187 -6 8 1507 909 179 0 0 chr5 120896932 120897072 -31640187 + B1_Mur4 SINE Alu 1 140 -10 8 1507 200 35 35 0 chr5 120897072 120897101 -31640158 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 8 1507 309 157 61 53 chr5 120897884 120897996 -31639263 - B2_Mm2 SINE B2 -1 192 47 8 1507 839 112 7 69 chr5 120898070 120898214 -31639045 - B2_Mm1t SINE B2 -57 136 2 8 1507 405 0 0 0 chr5 120898222 120898267 -31638992 + (TC)n Simple_repeat Simple_repeat 2 46 0 8 1507 402 21 0 0 chr5 120898267 120898314 -31638945 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1507 646 260 21 73 chr5 120898319 120898510 -31638749 - B3A SINE B2 -17 181 1 8 1507 709 243 121 28 chr5 120899053 120899275 -31637984 + ID_B1 SINE B4 8 243 -49 8 1507 786 207 0 0 chr5 120899305 120899440 -31637819 + B1_Mur2 SINE Alu 3 137 -12 8 1507 1234 70 21 12 chr5 120899440 120899876 -31637383 + (TAGA)n Simple_repeat Simple_repeat 1 440 0 8 1507 449 252 18 18 chr5 120900069 120900182 -31637077 + PB1D7 SINE Alu 1 113 -7 8 1507 220 290 16 0 chr5 120900193 120900255 -31637004 + BC1_Mm scRNA scRNA 23 85 -67 8 1507 498 96 0 0 chr5 120900400 120900473 -31636786 + (TC)n Simple_repeat Simple_repeat 2 74 0 8 1507 626 144 0 0 chr5 120900487 120900584 -31636675 - B1_Mus1 SINE Alu -50 98 2 8 1507 837 169 118 6 chr5 120901195 120901373 -31635886 + B3 SINE B2 9 206 -10 8 1507 3249 58 0 10 chr5 120901631 120902031 -31635228 - MTA_Mm LTR MaLR 0 396 1 8 1507 313 286 0 0 chr5 120902207 120902277 -31634982 + PB1D10 SINE Alu 3 72 -45 8 1507 505 29 0 0 chr5 120902510 120902578 -31634681 + L1_Mus3 LINE L1 6565 6632 -6 8 1507 315 289 66 82 chr5 120902583 120902630 -31634629 - B2_Mm2 SINE B2 -2 193 150 8 1507 522 193 77 135 chr5 120902630 120902786 -31634473 - B1_Mus1 SINE Alu 0 148 2 8 1507 315 289 66 82 chr5 120902786 120902797 -31634462 - B2_Mm2 SINE B2 -46 149 143 8 1507 360 0 0 0 chr5 120902797 120902837 -31634422 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1507 586 193 132 7 chr5 120902837 120902973 -31634286 - B3 SINE B2 -63 153 1 8 1507 903 132 29 8 chr5 120902974 120903146 -31634113 - B2_Mm2 SINE B2 -24 169 1 8 1507 865 184 149 25 chr5 120903379 120903580 -31633679 - URR1A DNA MER1_type 0 226 1 8 1507 1361 49 16 0 chr5 120903816 120903999 -31633260 + B2_Mm2 SINE B2 7 192 -3 8 1507 218 298 150 47 chr5 120904076 120904203 -31633056 - MIRm SINE MIR -85 191 52 8 1507 185 185 130 0 chr5 120904278 120904332 -31632927 + MIRc SINE MIR 121 181 -87 8 1507 219 69 0 0 chr5 120904488 120904517 -31632742 + (T)n Simple_repeat Simple_repeat 1 29 0 8 1507 1010 139 101 74 chr5 120904969 120905186 -31632073 + URR1A DNA MER1_type 1 223 -3 8 1507 308 284 11 0 chr5 120905591 120905686 -31631573 + BC1_Mm scRNA scRNA 2 97 -55 8 1507 296 250 0 0 chr5 120905893 120905949 -31631310 - B4 SINE B4 -2 290 235 8 1507 294 278 85 57 chr5 120906790 120906931 -31630328 + MIRb SINE MIR 86 230 -38 8 1507 230 246 31 0 chr5 120907053 120907118 -31630141 + GA-rich Low_complexity Low_complexity 6 72 0 8 1507 243 0 0 0 chr5 120907118 120907145 -31630114 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1507 360 0 0 0 chr5 120907145 120907184 -31630075 + (GA)n Simple_repeat Simple_repeat 1 40 0 8 1507 198 195 0 0 chr5 120907422 120907463 -31629796 - MIRc SINE MIR -144 124 84 8 1507 450 0 0 0 chr5 120907630 120907680 -31629579 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1507 183 42 0 0 chr5 120908628 120908652 -31628607 + (TCCA)n Simple_repeat Simple_repeat 3 26 0 8 1507 387 211 0 0 chr5 120908829 120908924 -31628335 + (TCCA)n Simple_repeat Simple_repeat 2 96 0 8 1507 245 306 131 92 chr5 120908967 120909302 -31627957 - L2b LINE L2 0 3375 3028 8 1507 285 230 0 22 chr5 120910198 120910293 -31626966 + MIR SINE MIR 38 128 -140 8 1507 331 344 66 0 chr5 120910401 120910552 -31626707 - MIRb SINE MIR -107 161 1 8 1507 266 175 48 0 chr5 120910500 120910563 -31626696 + MIR SINE MIR 82 147 -61 8 1507 947 137 0 0 chr5 120911349 120911495 -31625764 + B1_Mus2 SINE Alu 1 146 -1 8 1507 324 279 25 0 chr5 120912586 120912665 -31624594 + PB1D10 SINE Alu 1 81 -36 8 1507 681 36 0 0 chr5 120912670 120912754 -31624505 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 8 1507 248 0 31 0 chr5 120913497 120913529 -31623730 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 8 1507 1529 78 0 10 chr5 120913560 120913755 -31623504 + B2_Mm1a SINE B2 1 193 0 8 1507 338 258 72 0 chr5 120913906 120914003 -31623256 - PB1D10 SINE Alu -7 110 7 8 1507 261 263 18 0 chr5 120914100 120914157 -31623102 + ID_B1 SINE B4 161 218 -6 8 1507 439 238 48 0 chr5 120914165 120914270 -31622989 + B3A SINE B2 1 110 -88 8 1507 401 233 39 10 chr5 120914507 120914611 -31622648 + B3 SINE B2 103 209 -7 8 1507 306 245 71 41 chr5 120914633 120914731 -31622528 + RSINE1 SINE B4 2 102 -63 8 1507 319 313 35 78 chr5 120914742 120914884 -31622375 + ID_B1 SINE B4 80 215 -9 8 1507 429 248 16 57 chr5 120914768 120914892 -31622367 + B1F SINE Alu 30 148 -1 8 1507 492 18 0 0 chr5 120914903 120914960 -31622299 + (GAAAA)n Simple_repeat Simple_repeat 5 61 0 8 1507 849 117 0 62 chr5 120914975 120915167 -31622092 + A-rich Low_complexity Low_complexity 1 180 0 8 1507 890 194 48 5 chr5 120915462 120915649 -31621610 + MTC LTR MaLR 1 195 -226 8 1507 531 196 27 0 chr5 120915649 120915691 -31621568 - B2_Mm2 SINE B2 0 195 151 8 1507 285 29 0 0 chr5 120915691 120915725 -31621534 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1507 531 196 27 0 chr5 120915725 120915794 -31621465 - B2_Mm2 SINE B2 -45 150 82 8 1507 282 286 237 15 chr5 120915749 120915884 -31621375 + B3 SINE B2 46 210 -6 8 1507 278 24 73 0 chr5 120916264 120916305 -31620954 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 8 1507 1252 41 7 0 chr5 120916308 120916454 -31620805 - B1_Mus1 SINE Alu 0 148 2 8 1507 246 62 0 0 chr5 120916515 120916547 -31620712 + (CAT)n Simple_repeat Simple_repeat 2 33 0 8 1507 216 0 0 0 chr5 120916547 120916570 -31620689 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 8 1507 760 119 48 0 chr5 120916612 120916738 -31620521 + B1_Mus2 SINE Alu 16 147 0 8 1507 237 159 0 22 chr5 120916890 120916935 -31620324 + B4A SINE B4 44 87 -205 8 1507 212 207 0 108 chr5 120916896 120916961 -31620298 + B3A SINE B2 49 106 -92 8 1507 813 194 0 7 chr5 120917718 120917853 -31619406 + B1_Mur2 SINE Alu 2 135 -14 8 1507 504 0 0 0 chr5 120917853 120917909 -31619350 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 8 1507 1152 84 0 22 chr5 120917911 120918093 -31619166 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 8 1507 1112 117 0 11 chr5 120918105 120918287 -31618972 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 8 1507 430 367 46 7 chr5 120918673 120918824 -31618435 + B4A SINE B4 41 197 -95 8 1507 477 283 9 0 chr5 120919303 120919416 -31617843 - ID_B1 SINE B4 -6 218 105 8 1507 636 264 59 48 chr5 120919467 120919654 -31617605 + B3A SINE B2 9 197 -1 8 1507 982 67 97 0 chr5 120919661 120919795 -31617464 + B1_Mus2 SINE Alu 1 147 0 8 1507 22 0 0 0 chr5 120919799 120919821 -31617438 + AT_rich Low_complexity Low_complexity 1 22 0 9 1507 882 162 14 0 chr5 120919821 120919963 -31617296 + B1_Mur4 SINE Alu 1 144 -6 9 1507 216 0 0 0 chr5 120919964 120919988 -31617271 + (CAT)n Simple_repeat Simple_repeat 1 24 0 9 1507 804 181 0 0 chr5 120919998 120920131 -31617128 - B1_Mur1 SINE Alu -16 133 1 9 1507 243 299 54 74 chr5 120920007 120920155 -31617104 + YREP_Mm Unknown Unknown 197 341 -1471 9 1507 1708 164 27 3 chr5 120920157 120920450 -31616809 + Lx5 LINE L1 6748 7047 -3 9 1507 275 278 20 49 chr5 120920487 120920589 -31616670 + ID_B1 SINE B4 78 176 -48 9 1507 420 222 40 0 chr5 120920501 120920600 -31616659 + PB1D7 SINE Alu 9 111 -9 9 1507 567 272 54 0 chr5 120920635 120920782 -31616477 + RSINE1 SINE B4 11 165 0 9 1507 236 250 0 0 chr5 120920784 120920832 -31616427 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1507 647 228 6 18 chr5 120920832 120921172 -31616087 + (CATA)n Simple_repeat Simple_repeat 1 336 0 9 1507 275 281 74 66 chr5 120921250 120921372 -31615887 + MIR SINE MIR 18 144 -124 9 1507 626 205 79 37 chr5 120922347 120922504 -31614755 + ID_B1 SINE B4 66 223 -1 9 1507 658 106 19 0 chr5 120923166 120923270 -31613989 - B1_Mur3 SINE Alu -43 106 1 9 1507 1020 100 14 28 chr5 120923309 120923453 -31613806 + B1_Mus1 SINE Alu 1 142 -6 9 1507 652 264 14 7 chr5 120923503 120923648 -31613611 - RSINE1 SINE B4 -16 149 4 9 1507 720 234 0 0 chr5 120923663 120923804 -31613455 - ID_B1 SINE B4 0 224 84 9 1507 415 274 26 0 chr5 120923810 120923923 -31613336 - PB1D7 SINE Alu 0 120 5 9 1507 881 144 0 8 chr5 120923982 120924115 -31613144 + B1_Mur3 SINE Alu 1 132 -17 9 1507 1023 238 5 5 chr5 120924485 120924700 -31612559 + ID_B1 SINE B4 1 215 -9 9 1507 1099 101 5 146 chr5 120925161 120925381 -31611878 + B2_Mm2 SINE B2 1 189 -6 9 1507 399 41 0 0 chr5 120925391 120925440 -31611819 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1507 209 108 27 0 chr5 120925494 120925531 -31611728 + (ATG)n Simple_repeat Simple_repeat 1 38 0 9 1507 183 200 0 0 chr5 120925743 120925773 -31611486 - MIRc SINE MIR -195 73 44 9 1507 1655 27 5 0 chr5 120925781 120925969 -31611290 - B2_Mm1a SINE B2 -4 189 1 9 1507 382 235 105 29 chr5 120926180 120926285 -31610974 - PB1D7 SINE Alu 0 120 8 9 1507 594 0 0 0 chr5 120927316 120927382 -31609877 + (TC)n Simple_repeat Simple_repeat 1 66 0 9 1507 622 221 31 0 chr5 120927807 120927934 -31609325 - ID_B1 SINE B4 0 224 94 9 1507 395 305 0 0 chr5 120927992 120928087 -31609172 + PB1D10 SINE Alu 2 96 -21 9 1507 471 331 0 24 chr5 120928122 120928286 -31608973 + B4A SINE B4 2 161 -131 9 1507 766 235 13 17 chr5 120928477 120928650 -31608609 + B4A SINE B4 86 290 -2 9 1507 864 209 42 16 chr5 120929414 120929604 -31607655 + B3A SINE B2 1 195 -3 9 1507 316 264 21 52 chr5 120929605 120929701 -31607558 + B3 SINE B2 2 94 -101 9 1507 710 153 231 20 chr5 120929702 120929849 -31607410 - B2_Mm1t SINE B2 -14 179 2 9 1507 1131 102 90 11 chr5 120929860 120930038 -31607221 - B2_Mm2 SINE B2 -3 192 1 9 1507 23 0 0 0 chr5 120930046 120930069 -31607190 + AT_rich Low_complexity Low_complexity 1 23 0 9 1507 284 314 74 8 chr5 120931136 120931258 -31606001 - LTR16C LTR ERVL -159 330 201 9 1507 348 306 119 23 chr5 120931858 120932035 -31605224 - MLT1J LTR MaLR -115 397 204 9 1507 330 374 12 52 chr5 120932200 120932372 -31604887 - Tigger5 DNA MER2_type -2240 166 2 9 1507 331 243 0 0 chr5 120932374 120932448 -31604811 - MLT1J LTR MaLR -306 142 69 9 1507 321 304 0 0 chr5 120932576 120932655 -31604604 + MLT1J LTR MaLR 230 308 -204 9 1507 376 259 32 30 chr5 120933924 120934069 -31603190 - PB1D10 SINE Alu -3 147 1 9 1507 283 402 0 6 chr5 120934845 120935005 -31602254 + (TGGG)n Simple_repeat Simple_repeat 2 160 0 9 1507 229 291 127 4 chr5 120936943 120937070 -31600189 + MIRm SINE MIR 48 183 -79 9 1507 190 305 51 0 chr5 120938237 120938296 -31598963 + MIR3 SINE MIR 98 159 -49 9 1507 355 277 63 24 chr5 120939040 120939183 -31598076 + B1F2 SINE Alu 2 143 -6 9 1507 322 292 0 78 chr5 120939451 120939566 -31597693 - PB1D7 SINE Alu 0 120 15 9 1507 1320 91 28 6 chr5 120939597 120939774 -31597485 + B2_Mm2 SINE B2 2 182 -13 9 1507 449 180 24 105 chr5 120939775 120939830 -31597429 + ID_B1 SINE B4 111 166 -58 9 1507 1277 41 0 0 chr5 120939830 120939977 -31597282 + B1_Mus2 SINE Alu 1 147 0 9 1507 449 180 24 105 chr5 120939977 120940045 -31597214 + ID_B1 SINE B4 167 224 0 9 1507 375 242 153 32 chr5 120940084 120940208 -31597051 + B1F1 SINE Alu 1 139 -10 9 1507 664 260 14 7 chr5 120940262 120940409 -31596850 + B1_Mur2 SINE Alu 2 149 0 9 1507 231 191 0 0 chr5 120940552 120940615 -31596644 + CT-rich Low_complexity Low_complexity 1 63 0 9 1507 282 158 35 0 chr5 120941394 120941451 -31595808 + PB1D10 SINE Alu 52 110 -7 9 1507 331 202 16 24 chr5 120941451 120941578 -31595681 + GA-rich Low_complexity Low_complexity 1 126 0 9 1507 597 218 11 40 chr5 120941867 120941885 -31595374 + ID_B1 SINE B4 70 151 -141 9 1507 1101 35 0 0 chr5 120941885 120942027 -31595232 + B1_Mus1 SINE Alu 7 148 0 9 1507 597 218 11 40 chr5 120942027 120942045 -31595214 + ID_B1 SINE B4 152 246 -46 9 1507 247 299 0 0 chr5 120942263 120942330 -31594929 + PB1D10 SINE Alu 13 79 -38 9 1507 292 282 19 28 chr5 120943554 120943660 -31593599 + (TGGA)n Simple_repeat Simple_repeat 3 107 0 9 1507 324 304 49 0 chr5 120944903 120945005 -31592254 - PB1D10 SINE Alu -4 113 7 9 1507 491 238 126 0 chr5 120944931 120945074 -31592185 - ID_B1 SINE B4 -61 163 3 9 1507 254 231 29 125 chr5 120945293 120945397 -31591862 + MLT1H LTR MaLR 252 345 -204 9 1507 203 216 0 73 chr5 120945863 120945918 -31591341 - MIR SINE MIR -119 143 93 9 1507 2427 144 44 69 chr5 120946418 120946894 -31590365 + RMER4A LTR ERVK 3 466 0 9 1507 491 212 84 8 chr5 120947225 120947344 -31589915 + B1F SINE Alu 19 146 -3 9 1507 495 279 65 0 chr5 120947356 120947510 -31589749 + ID_B1 SINE B4 5 168 -56 9 1507 280 309 127 6 chr5 120947531 120947666 -31589593 + B2_Mm1t SINE B2 1 154 -39 9 1507 297 0 0 0 chr5 120947666 120947699 -31589560 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 9 1507 280 309 127 6 chr5 120947699 120947729 -31589530 + B2_Mm1t SINE B2 155 186 -7 9 1507 710 270 25 0 chr5 120947880 120948039 -31589220 + RSINE1 SINE B4 2 164 -1 9 1507 512 262 103 17 chr5 120948236 120948411 -31588848 + ID_B1 SINE B4 31 220 -4 9 1507 243 355 28 0 chr5 120948512 120948619 -31588640 + L1MB5 LINE L1 6009 6118 -56 9 1507 230 351 13 0 chr5 120948650 120948727 -31588532 - B1F SINE Alu -59 90 13 9 1507 228 339 26 43 chr5 120948727 120948767 -31588492 - ID_B1 SINE B4 -56 168 54 9 1507 312 264 77 0 chr5 120948749 120948840 -31588419 - PB1D7 SINE Alu -21 99 2 9 1507 228 330 73 9 chr5 120948840 120948868 -31588391 - ID SINE ID -139 85 51 9 1507 584 193 37 0 chr5 120949277 120949386 -31587873 - PB1D7 SINE Alu -7 113 1 9 1507 212 312 0 15 chr5 120949665 120949730 -31587529 - MIR SINE MIR -87 175 112 9 1507 676 245 29 59 chr5 120950319 120950523 -31586736 + B3A SINE B2 1 198 0 9 1507 253 138 86 0 chr5 120950525 120950583 -31586676 + T-rich Low_complexity Low_complexity 3 65 0 9 1507 1169 54 0 26 chr5 120950583 120950734 -31586525 - B1_Mus2 SINE Alu 0 147 1 9 1507 1514 60 16 0 chr5 120950743 120950926 -31586333 - B2_Mm2 SINE B2 -8 187 2 9 1507 430 164 269 25 chr5 120950945 120951064 -31586195 - B1_Mur3 SINE Alu -1 148 1 9 1507 474 238 38 15 chr5 120951106 120951142 -31586117 + ID SINE ID 45 83 -141 9 1507 212 298 74 37 chr5 120951142 120951250 -31586009 + B1F SINE Alu 1 112 -37 9 1507 636 207 124 0 chr5 120951288 120951433 -31585826 + RSINE1 SINE B4 3 165 0 9 1507 217 290 58 0 chr5 120951923 120951992 -31585267 - MIRm SINE MIR -119 157 85 9 1507 461 215 0 0 chr5 120952999 120953123 -31584136 + B1_Mur1 SINE Alu 9 131 -18 9 1507 217 337 10 0 chr5 120953782 120953883 -31583376 + CT-rich Low_complexity Low_complexity 3 104 0 9 1507 705 239 63 37 chr5 120953892 120953928 -31583331 - B3A SINE B2 -2 196 163 9 1507 399 21 0 0 chr5 120953928 120953976 -31583283 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1507 705 239 63 37 chr5 120953976 120954130 -31583129 - B3A SINE B2 -36 162 1 9 1507 333 203 28 28 chr5 120954183 120954254 -31583005 + B1F SINE Alu 74 144 -5 9 1507 358 245 9 78 chr5 120954546 120954661 -31582598 + PB1D7 SINE Alu 12 118 -2 9 1507 241 340 61 10 chr5 120954755 120954853 -31582406 + PB1D7 SINE Alu 18 120 0 9 1507 924 132 217 0 chr5 120954864 120955030 -31582229 - B3 SINE B2 -13 203 2 9 1507 391 323 0 15 chr5 120955083 120955215 -31582044 + ID_B1 SINE B4 94 223 -1 9 1507 219 262 62 12 chr5 120955350 120955431 -31581828 - MIRb SINE MIR -125 143 59 9 1507 939 152 39 64 chr5 120955822 120956026 -31581233 - URR1A DNA MER1_type -27 199 1 9 1507 745 256 14 42 chr5 120956029 120956241 -31581018 + B4A SINE B4 26 231 -61 9 1507 390 145 0 14 chr5 120956243 120956313 -31580946 + PB1D9 SINE Alu 49 117 -3 9 1507 222 181 11 67 chr5 120956335 120956424 -31580835 + (TATAA)n Simple_repeat Simple_repeat 5 88 0 9 1507 567 229 25 0 chr5 120956433 120956551 -31580708 - B1F2 SINE Alu -28 121 1 9 1507 310 278 109 80 chr5 120956551 120956584 -31580675 - MT2B LTR ERVL -448 153 117 1 1507 216 355 34 41 chr5 120957477 120957624 -31579635 + MIRc SINE MIR 23 168 -100 1 1507 568 151 18 28 chr5 120957724 120957833 -31579426 - B1_Mus1 SINE Alu -2 146 39 1 1507 230 324 73 40 chr5 120957756 120957907 -31579352 - RLTR25A LTR ERVK -515 588 433 1 1507 326 281 6 104 chr5 120957833 120957884 -31579375 - ID_B1 SINE B4 0 221 78 1 1507 675 247 49 6 chr5 120957901 120957983 -31579276 - ID_B1 SINE B4 0 224 144 1 1507 4527 98 0 2 chr5 120957983 120958568 -31578691 + MT2B2 LTR ERVL 1 584 0 1 1507 675 254 52 11 chr5 120958568 120958676 -31578583 - ID_B1 SINE B4 -81 143 32 1 1507 183 42 0 0 chr5 120958676 120958700 -31578559 + (CAGCC)n Simple_repeat Simple_repeat 1 24 0 1 1507 310 332 89 80 chr5 120958700 120958728 -31578531 - B4 SINE B4 -261 31 6 1 1507 265 315 120 0 chr5 120958746 120958838 -31578421 + PB1D10 SINE Alu 7 109 -8 1 1507 383 288 57 74 chr5 120959245 120959489 -31577770 + MLT1F1 LTR MaLR 330 569 0 1 1507 291 261 203 25 chr5 120959643 120959761 -31577498 + B1_Mur1 SINE Alu 10 148 -1 1 1507 450 269 0 0 chr5 120959951 120960107 -31577152 + (TG)n Simple_repeat Simple_repeat 1 156 0 1 1507 687 238 30 36 chr5 120960107 120960273 -31576986 - RSINE1 SINE B4 0 165 1 1 1507 219 339 0 0 chr5 120960301 120960357 -31576902 - ID4_ SINE ID -13 70 15 1 1507 216 97 0 0 chr5 120960668 120960699 -31576560 + (CACCAT)n Simple_repeat Simple_repeat 4 34 0 1 1507 423 286 0 0 chr5 120960715 120960813 -31576446 - PB1D10 SINE Alu -11 106 9 1 1507 349 236 68 75 chr5 120962322 120962455 -31574804 + MT2B2 LTR ERVL 156 287 -297 1 1507 1036 57 7 0 chr5 120962431 120962571 -31574688 + B1_Mus1 SINE Alu 8 148 0 1 1507 407 319 1 9 chr5 120962599 120962722 -31574537 + B1F SINE Alu 5 128 -22 1 1507 332 229 0 0 chr5 120962732 120962793 -31574466 + ID4_ SINE ID 5 65 -18 1 1507 279 333 62 53 chr5 120963494 120963770 -31573489 - L2a LINE L2 -236 3190 2902 1 1507 1154 79 91 6 chr5 120963770 120963935 -31573324 + B2_Mm1t SINE B2 1 179 -14 1 1507 250 319 71 62 chr5 120963935 120964018 -31573241 - L2a LINE L2 -518 2901 2828 1 1507 663 285 21 38 chr5 120964023 120964209 -31573050 - ID_B1 SINE B4 -33 191 9 1 1507 261 83 0 0 chr5 120964586 120964622 -31572637 + (TTCTG)n Simple_repeat Simple_repeat 2 37 0 1 1507 336 217 9 124 chr5 120964623 120964728 -31572531 - B1F SINE Alu -50 99 7 1 1507 447 19 0 0 chr5 120964737 120964789 -31572470 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1507 221 178 146 39 chr5 120964789 120964883 -31572376 - B1F2 SINE Alu -10 139 2 1 1507 606 187 49 0 chr5 120965140 120965263 -31571996 - B1_Mus2 SINE Alu -2 145 17 1 1507 222 150 0 0 chr5 120965367 120965407 -31571852 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1507 426 253 32 0 chr5 120965410 120965505 -31571754 - RSINE1 SINE B4 -3 162 65 1 1507 503 208 27 36 chr5 120965574 120965684 -31571575 + PB1D10 SINE Alu 9 117 0 1 1507 236 327 140 0 chr5 120965824 120965931 -31571328 - MLT1D LTR MaLR -284 221 100 1 1507 276 224 0 29 chr5 120966042 120966111 -31571148 + (TCTG)n Simple_repeat Simple_repeat 4 70 0 1 1507 405 0 0 0 chr5 120966982 120967027 -31570232 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1507 594 297 43 0 chr5 120967266 120967451 -31569808 + ID_B1 SINE B4 27 219 -5 1 1507 241 155 98 49 chr5 120967520 120967581 -31569678 - B2_Mm2 SINE B2 -52 143 80 1 1507 563 167 73 73 chr5 120967903 120968039 -31569220 + B1_Mus1 SINE Alu 12 147 -2 1 1507 1367 53 53 0 chr5 120968384 120968555 -31568704 + B2_Mm2 SINE B2 2 181 -14 1 1507 1215 55 8 12 chr5 120968561 120968819 -31568440 + (GAAA)n Simple_repeat Simple_repeat 1 256 0 1 1507 423 0 0 0 chr5 120968873 120968920 -31568339 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1507 1116 103 0 0 chr5 120968920 120969065 -31568194 - B1_Mus1 SINE Alu -3 145 1 1 1507 477 177 221 49 chr5 120969077 120969261 -31567998 - B3A SINE B2 -1 197 7 1 1507 275 245 265 0 chr5 120969365 120969467 -31567792 - RSINE1 SINE B4 -28 137 9 1 1507 576 275 129 112 chr5 120970148 120970204 -31567055 - B4A SINE B4 -2 290 240 1 1507 925 150 0 33 chr5 120970204 120970356 -31566903 - B1_Mus1 SINE Alu -1 147 1 1 1507 576 275 129 112 chr5 120970356 120970577 -31566682 - B4A SINE B4 -53 239 8 1 1507 369 240 39 45 chr5 120972294 120972563 -31564696 + (CATA)n Simple_repeat Simple_repeat 1 267 0 1 1507 299 203 17 0 chr5 120973196 120973255 -31564004 + B1F2 SINE Alu 2 61 -88 1 1507 696 253 6 24 chr5 120973270 120973436 -31563823 + RSINE1 SINE B4 3 165 0 1 1507 243 0 0 0 chr5 120973498 120973525 -31563734 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 1507 245 234 0 0 chr5 120973831 120973878 -31563381 + GA-rich Low_complexity Low_complexity 4 50 0 1 1507 191 254 0 132 chr5 120973962 120974030 -31563229 + MIRc SINE MIR 144 202 -66 1 1507 761 209 0 39 chr5 120974403 120974424 -31562835 - B1_Mur1 SINE Alu 0 149 131 1 1507 2238 86 3 124 chr5 120974424 120974504 -31562755 - ORR1A2 LTR MaLR 0 327 252 1 1507 1456 78 16 5 chr5 120974504 120974697 -31562562 + B2_Mm2 SINE B2 1 195 0 1 1507 2238 86 3 124 chr5 120974697 120974988 -31562271 - ORR1A2 LTR MaLR -76 251 1 1 1507 761 209 0 39 chr5 120974988 120975120 -31562139 - B1_Mur1 SINE Alu -19 130 2 1 1507 546 231 31 0 chr5 120975403 120975533 -31561726 + ID_B1 SINE B4 2 135 -89 1 1507 242 56 28 0 chr5 120975825 120975861 -31561398 + (TCC)n Simple_repeat Simple_repeat 3 39 0 1 1507 230 229 78 52 chr5 120976002 120976117 -31561142 + BC1_Mm scRNA scRNA 2 119 -33 1 1507 582 221 0 85 chr5 120976124 120976277 -31560982 + B1_Mm SINE Alu 8 147 0 1 1507 980 139 195 27 chr5 120976933 120977118 -31560141 - B3 SINE B2 0 216 1 1 1507 1131 82 7 0 chr5 120977148 120977294 -31559965 - B1_Mus1 SINE Alu 0 148 2 1 1507 684 240 122 20 chr5 120977298 120977494 -31559765 - ID_B1 SINE B4 0 224 9 1 1507 259 312 0 0 chr5 120977525 120977605 -31559654 - ID_B1 SINE B4 -8 216 137 1 1507 195 69 0 0 chr5 120977643 120977672 -31559587 + (C)n Simple_repeat Simple_repeat 1 29 0 1 1507 1203 62 0 0 chr5 120977890 120978035 -31559224 + B1_Mus2 SINE Alu 3 147 0 1 1507 327 248 136 8 chr5 120978257 120978273 -31558986 - B1F SINE Alu 0 149 134 1 1507 947 210 48 14 chr5 120978273 120978481 -31558778 - B3 SINE B2 0 216 2 1 1507 405 200 86 0 chr5 120978481 120978582 -31558677 - PB1D7 SINE Alu -16 133 17 1 1507 372 22 0 0 chr5 120978830 120978875 -31558384 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1507 435 297 10 0 chr5 120978875 120978976 -31558283 - RSINE1 SINE B4 -40 125 24 1 1507 297 176 0 0 chr5 120978979 120979053 -31558206 + CT-rich Low_complexity Low_complexity 4 77 0 1 1508 429 20 0 0 chr5 120979940 120979990 -31557269 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1508 285 29 0 0 chr5 120980272 120980306 -31556953 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1508 1170 81 0 0 chr5 120980763 120980911 -31556348 - B1_Mus1 SINE Alu 0 148 1 1 1508 432 0 0 0 chr5 120981610 120981658 -31555601 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1508 360 265 139 26 chr5 120981688 120981839 -31555420 - B4A SINE B4 -22 270 103 1 1508 296 289 41 52 chr5 120982451 120982465 -31554794 + ID_B1 SINE B4 69 123 -169 1 1508 449 232 31 10 chr5 120982465 120982561 -31554698 + PB1D7 SINE Alu 1 98 -22 1 1508 296 289 41 52 chr5 120982561 120982578 -31554681 + ID_B1 SINE B4 124 202 -90 1 1508 420 228 73 93 chr5 120982574 120982724 -31554535 + ID_B1 SINE B4 6 152 -72 1 1508 1225 62 0 0 chr5 120983735 120983881 -31553378 - B1_Mus1 SINE Alu -2 146 1 1 1508 180 0 26 79 chr5 120983955 120983993 -31553266 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1508 230 0 0 103 chr5 120985520 120985559 -31551700 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 1 1508 879 10 0 0 chr5 120987119 120987219 -31550040 + (GGAA)n Simple_repeat Simple_repeat 1 100 0 1 1508 353 328 26 9 chr5 120988117 120988231 -31549028 + ID_B1 SINE B4 106 221 -3 1 1508 214 281 0 17 chr5 120989590 120989648 -31547611 - PB1 SINE Alu -69 58 2 1 1508 1280 83 83 0 chr5 120990293 120990473 -31546786 + B2_Mm2 SINE B2 1 195 0 1 1508 3046 84 20 3 chr5 120991085 120991477 -31545782 + MTB LTR MaLR 2 400 0 1 1508 279 0 0 0 chr5 120993878 120993909 -31543350 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1508 1440 73 6 0 chr5 120994736 120994915 -31542344 + B2_Mm2 SINE B2 2 181 -14 1 1508 1472 34 33 11 chr5 120995541 120995722 -31541537 - B2_Mm2 SINE B2 -10 185 1 1 1508 324 248 203 55 chr5 120995924 120995937 -31541322 + ID_B1 SINE B4 78 224 0 1 1508 550 246 0 9 chr5 120995937 120996052 -31541207 + PB1D9 SINE Alu 7 120 0 1 1508 506 239 40 53 chr5 120996272 120996301 -31540958 + ID SINE ID 50 76 -148 1 1508 824 150 0 8 chr5 120996301 120996435 -31540824 + B1_Mur4 SINE Alu 1 133 -17 1 1508 238 329 43 0 chr5 120996754 120996824 -31540435 - ID4_ SINE ID -9 74 2 1 1508 461 248 64 0 chr5 120996830 120996939 -31540320 - PB1D7 SINE Alu 0 120 5 1 1508 252 0 0 0 chr5 120997311 120997339 -31539920 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1508 815 137 43 14 chr5 120997547 120997688 -31539571 + B1_Mus2 SINE Alu 2 146 -1 1 1508 366 294 9 29 chr5 120997754 120997859 -31539400 - PB1D10 SINE Alu 0 117 15 1 1508 288 0 0 0 chr5 120998722 120998754 -31538505 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1508 679 198 9 0 chr5 120998763 120998879 -31538380 - RSINE1 SINE B4 -41 124 8 1 1508 495 0 0 0 chr5 120998887 120998942 -31538317 + (TTA)n Simple_repeat Simple_repeat 2 56 0 1 1508 337 333 104 0 chr5 120998942 120999069 -31538190 - ID_B1 SINE B4 -13 211 71 1 1508 1342 96 37 0 chr5 120999287 120999474 -31537785 - B2_Mm2 SINE B2 -1 194 1 1 1508 1242 77 33 0 chr5 121000522 121000705 -31536554 - B2_Mm2 SINE B2 -1 194 6 1 1508 255 93 0 0 chr5 121000772 121000815 -31536444 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1508 241 282 38 107 chr5 121000869 121001000 -31536259 - MER58B DNA MER1_type -39 302 181 3 1508 359 195 194 79 chr5 121001047 121001186 -31536073 - RSINE1 SINE B4 0 165 11 4 1508 467 260 10 0 chr5 121001193 121001297 -31535962 - PB1D10 SINE Alu -8 109 5 5 1508 908 292 138 17 chr5 121001848 121002210 -31535049 + RMER5 LTR ERV1 58 463 -71 6 1508 348 111 0 0 chr5 121002454 121002508 -31534751 + (GGGA)n Simple_repeat Simple_repeat 1 54 0 7 1508 247 346 72 22 chr5 121002595 121002734 -31534525 - B3A SINE B2 -24 174 29 8 1508 493 250 0 9 chr5 121002725 121002830 -31534429 + ID_B1 SINE B4 11 114 -110 9 1508 254 286 26 0 chr5 121002838 121002915 -31534344 + ID4 SINE ID 2 80 -3 1 1508 274 339 78 17 chr5 121004378 121004533 -31532726 - Charlie8 DNA MER1_type -2146 282 124 1 1508 1625 27 5 0 chr5 121004581 121004765 -31532494 - B2_Mm1t SINE B2 -7 186 2 1 1508 274 319 0 0 chr5 121004934 121005003 -31532256 + PB1D10 SINE Alu 37 105 -12 1 1508 474 18 0 0 chr5 121005511 121005566 -31531693 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1508 351 0 0 0 chr5 121006680 121006719 -31530540 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1508 362 230 200 36 chr5 121007020 121007160 -31530099 + RSINE1 SINE B4 3 165 0 1 1508 601 176 0 11 chr5 121007160 121007338 -31529921 + (CA)n Simple_repeat Simple_repeat 1 176 0 1 1508 225 163 0 0 chr5 121007375 121007424 -31529835 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1508 698 194 15 0 chr5 121009428 121009562 -31527697 + B1_Mur2 SINE Alu 14 149 0 1 1508 505 165 97 0 chr5 121009673 121009776 -31527483 + PB1D9 SINE Alu 8 120 0 1 1508 517 202 36 14 chr5 121010371 121010527 -31526732 + ORR1B1 LTR MaLR 31 213 -181 2 1508 448 244 0 0 chr5 121010632 121010722 -31526537 + RSINE1 SINE B4 5 94 -71 2 1508 1413 51 0 0 chr5 121011589 121011767 -31525492 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 2 1508 576 0 0 0 chr5 121011767 121011831 -31525428 + (GAA)n Simple_repeat Simple_repeat 1 64 0 2 1508 369 286 55 41 chr5 121011938 121012084 -31525175 + RSINE1 SINE B4 8 155 -10 2 1508 494 286 37 15 chr5 121012117 121012252 -31525007 + B1_Mur1 SINE Alu 1 138 -11 2 1508 363 44 0 0 chr5 121012252 121012297 -31524962 + (TGGA)n Simple_repeat Simple_repeat 3 47 0 2 1508 369 0 0 0 chr5 121012314 121012355 -31524904 + (CATA)n Simple_repeat Simple_repeat 3 43 0 2 1508 250 316 13 0 chr5 121012419 121012498 -31524761 + ID4_ SINE ID 3 82 -1 2 1508 1351 80 32 0 chr5 121012506 121012693 -31524566 + B2_Mm2 SINE B2 2 194 -1 2 1508 389 195 177 39 chr5 121012731 121012851 -31524408 + PB1D9 SINE Alu 1 129 -19 3 1508 441 0 0 0 chr5 121013979 121014028 -31523231 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1508 343 175 28 110 chr5 121014037 121014146 -31523113 - B1_Mur3 SINE Alu -6 143 44 3 1508 504 189 20 0 chr5 121014246 121014399 -31522860 + (TG)n Simple_repeat Simple_repeat 2 157 0 3 1508 617 225 8 0 chr5 121014439 121014693 -31522566 + (TG)n Simple_repeat Simple_repeat 1 256 0 3 1508 314 176 0 86 chr5 121014693 121014774 -31522485 - HAL1-3A_ME LINE L1 -840 2018 1945 3 1508 402 241 286 18 chr5 121014792 121015016 -31522243 + B4A SINE B4 1 284 -8 3 1508 381 17 17 33 chr5 121015034 121015094 -31522165 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1508 459 0 0 0 chr5 121015488 121015539 -31521720 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1508 243 241 0 17 chr5 121017601 121017660 -31519599 + G-rich Low_complexity Low_complexity 5 62 0 3 1508 191 354 8 33 chr5 121020623 121020705 -31516554 - MIRb SINE MIR -70 198 120 3 1508 255 125 0 0 chr5 121020705 121020745 -31516514 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1508 191 354 8 33 chr5 121020745 121020782 -31516477 - MIRb SINE MIR -149 119 83 3 1508 613 271 6 49 chr5 121021880 121022043 -31515216 + RSINE1 SINE B4 10 165 0 4 1508 1031 101 6 0 chr5 121022083 121022242 -31515017 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 4 1508 512 231 147 0 chr5 121022249 121022392 -31514867 + B3A SINE B2 1 164 -34 4 1508 195 129 0 0 chr5 121022393 121022424 -31514835 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1508 236 247 20 141 chr5 121022452 121022551 -31514708 - PB1D9 SINE Alu -50 99 13 4 1508 342 239 229 8 chr5 121022488 121022606 -31514653 - ID_B1 SINE B4 -69 155 12 4 1508 474 18 0 0 chr5 121022778 121022833 -31514426 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 1508 466 167 0 13 chr5 121022839 121022918 -31514341 - RSINE1 SINE B4 -84 81 4 4 1508 687 228 14 8 chr5 121023057 121023207 -31514052 + ID_B1 SINE B4 78 224 0 4 1508 269 189 64 51 chr5 121023552 121023630 -31513629 - ID_B1 SINE B4 0 224 146 5 1508 218 258 55 22 chr5 121023630 121023642 -31513617 - B1F2 SINE Alu 0 148 56 5 1508 2370 136 103 60 chr5 121023774 121023808 -31513451 + RMER4A LTR ERVK 1 34 -432 5 1508 444 19 0 0 chr5 121023808 121023861 -31513398 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1508 2370 136 103 60 chr5 121023861 121024273 -31512986 + RMER4A LTR ERVK 35 466 0 5 1508 533 98 108 0 chr5 121025486 121025588 -31511671 - L1Md_F3 LINE L1 -2 6582 6470 5 1508 1671 213 70 118 chr5 121025613 121025760 -31511499 + RCHARR1 DNA MER1_type 362 520 -454 5 1508 1230 55 0 0 chr5 121025760 121025906 -31511353 + B1_Mus2 SINE Alu 2 147 0 5 1508 1671 213 70 118 chr5 121025906 121026274 -31510985 + RCHARR1 DNA MER1_type 521 852 -122 5 1508 1285 86 16 0 chr5 121026274 121026460 -31510799 + B2_Mm2 SINE B2 2 190 -5 5 1508 21 0 0 0 chr5 121026516 121026537 -31510722 + AT_rich Low_complexity Low_complexity 1 21 0 5 1508 212 178 0 22 chr5 121026891 121026937 -31510322 - ID4_ SINE ID -4 79 35 5 1508 342 0 0 0 chr5 121027576 121027614 -31509645 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1508 831 232 1 13 chr5 121027616 121027803 -31509456 - B3A SINE B2 -32 184 1 6 1508 337 213 79 13 chr5 121027898 121027974 -31509285 + ID4_ SINE ID 3 83 0 6 1508 209 196 0 61 chr5 121029121 121029170 -31508089 + C-rich Low_complexity Low_complexity 2 47 0 6 1508 696 12 0 0 chr5 121030744 121030825 -31506434 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 6 1508 549 267 34 20 chr5 121031542 121031691 -31505568 + RSINE1 SINE B4 11 161 -4 6 1508 1521 170 67 131 chr5 121032579 121032675 -31504584 + MTC LTR MaLR 16 109 -312 6 1508 195 42 0 0 chr5 121032675 121032699 -31504560 + (TA)n Simple_repeat Simple_repeat 1 24 0 6 1508 1521 170 67 131 chr5 121032699 121032712 -31504547 + MTC LTR MaLR 110 110 -311 6 1508 1091 79 7 0 chr5 121032712 121032852 -31504407 - B1_Mus1 SINE Alu -7 141 1 6 1508 1521 170 67 131 chr5 121032852 121032880 -31504379 + MTC LTR MaLR 110 110 -311 6 1508 243 0 0 0 chr5 121032880 121032907 -31504352 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1508 1521 170 67 131 chr5 121032907 121033201 -31504058 + MTC LTR MaLR 110 421 0 6 1508 380 202 75 0 chr5 121033734 121033828 -31503431 + MIRc SINE MIR 67 167 -101 7 1508 511 178 32 48 chr5 121034020 121034144 -31503115 + MIRb SINE MIR 26 147 -121 7 1508 321 256 22 44 chr5 121035439 121035529 -31501730 + L1MEg LINE L1 1856 1943 -4141 7 1508 648 235 118 0 chr5 121035584 121035754 -31501505 - ID_B1 SINE B4 -27 197 8 7 1508 633 61 0 0 chr5 121035913 121035995 -31501264 + (GAA)n Simple_repeat Simple_repeat 2 83 0 7 1508 741 155 0 0 chr5 121035986 121036115 -31501144 + GA-rich Low_complexity Low_complexity 5 133 0 7 1508 294 279 34 67 chr5 121036127 121036246 -31501013 + MT2B2 LTR ERVL 127 241 -343 7 1508 594 252 21 7 chr5 121036160 121036304 -31500955 + ID_B1 SINE B4 79 224 0 7 1508 659 124 76 4 chr5 121036308 121036430 -31500829 + B1_Mur4 SINE Alu 1 127 -23 7 1508 293 203 16 0 chr5 121037993 121038057 -31499202 - MIRm SINE MIR -129 147 83 7 1508 211 311 19 0 chr5 121038566 121038669 -31498590 + (CCG)n Simple_repeat Simple_repeat 1 105 0 8 1508 764 170 80 22 chr5 121039509 121039647 -31497612 - B1_Mur2 SINE Alu -1 148 3 8 1508 442 311 58 58 chr5 121039695 121039866 -31497393 - B3A SINE B2 -1 197 27 8 1508 2029 66 17 208 chr5 121040111 121040355 -31496904 - ORR1A2 LTR MaLR 0 327 108 8 1508 1139 82 7 0 chr5 121040355 121040501 -31496758 - B1_Mm SINE Alu 0 147 1 8 1508 2029 66 17 208 chr5 121040501 121040660 -31496599 - ORR1A2 LTR MaLR -220 107 1 8 1508 585 232 83 24 chr5 121040712 121040865 -31496394 + B3A SINE B2 2 165 -33 8 1508 183 80 0 0 chr5 121040865 121040890 -31496369 + (CATG)n Simple_repeat Simple_repeat 1 25 0 8 1508 585 232 83 24 chr5 121040890 121040904 -31496355 + B3A SINE B2 166 179 -19 8 1508 202 214 24 0 chr5 121041391 121041433 -31495826 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1508 331 220 5 63 chr5 121041435 121041624 -31495635 + (TATG)n Simple_repeat Simple_repeat 2 179 0 8 1508 1219 48 7 0 chr5 121041648 121041794 -31495465 + B1_Mus1 SINE Alu 2 148 0 8 1508 324 198 18 36 chr5 121041807 121041917 -31495342 + (TATG)n Simple_repeat Simple_repeat 3 110 0 9 1508 896 244 55 5 chr5 121042269 121042471 -31494788 - B3 SINE B2 -4 212 1 9 1508 2012 144 90 14 chr5 121043032 121043181 -31494078 + ORR1B1 LTR MaLR 1 149 -245 9 1508 342 0 0 0 chr5 121043181 121043219 -31494040 + (TA)n Simple_repeat Simple_repeat 2 39 0 9 1508 2012 144 90 14 chr5 121043219 121043435 -31493824 + ORR1B1 LTR MaLR 150 393 -1 9 1508 4675 88 36 62 chr5 121043512 121044283 -31492976 - RMER17A LTR ERVK 0 751 1 9 1508 180 327 18 0 chr5 121044323 121044378 -31492881 - L2c LINE L2 -2 3385 3330 9 1508 487 274 104 0 chr5 121044427 121044562 -31492697 - RSINE1 SINE B4 0 165 17 9 1508 201 375 42 0 chr5 121044605 121044701 -31492558 + MIRb SINE MIR 116 215 -53 9 1508 760 203 35 14 chr5 121044705 121044850 -31492409 + B1_Mus1 SINE Alu 1 148 0 9 1508 189 171 0 0 chr5 121044867 121044902 -31492357 + T-rich Low_complexity Low_complexity 1 35 0 9 1508 1224 61 0 0 chr5 121044902 121045049 -31492210 - B1_Mus2 SINE Alu 0 147 1 1 1508 432 212 0 12 chr5 121045067 121045153 -31492106 - B1F SINE Alu 0 149 65 1 1508 387 232 10 69 chr5 121045123 121045225 -31492034 - ID_B1 SINE B4 -23 201 106 1 1508 604 200 0 60 chr5 121046802 121046935 -31490324 + B1_Mur1 SINE Alu 19 143 -6 1 1508 952 162 0 0 chr5 121047708 121047850 -31489409 - B1_Mus2 SINE Alu -5 142 1 1 1508 414 209 219 0 chr5 121048028 121048133 -31489126 + ID_B1 SINE B4 97 224 0 1 1508 523 172 245 37 chr5 121048234 121048397 -31488862 - URR1A DNA MER1_type -28 198 2 1 1508 1013 128 7 7 chr5 121048523 121048673 -31488586 - B1_Mur4 SINE Alu 0 150 1 1 1508 351 65 0 0 chr5 121048678 121048724 -31488535 + (CTTA)n Simple_repeat Simple_repeat 2 47 0 1 1508 217 238 15 45 chr5 121048738 121048804 -31488455 - PB1D10 SINE Alu -28 89 26 1 1508 834 301 61 0 chr5 121048916 121049178 -31488081 + B4A SINE B4 7 284 -8 1 1508 187 175 17 17 chr5 121049292 121049350 -31487909 + (TCCTG)n Simple_repeat Simple_repeat 2 59 0 1 1508 573 285 0 62 chr5 121051254 121051292 -31485967 + B3A SINE B2 1 31 -167 1 1508 692 178 0 8 chr5 121051292 121051411 -31485848 - PB1D9 SINE Alu 0 120 3 1 1508 573 247 19 108 chr5 121051411 121051585 -31485674 + B3A SINE B2 32 194 -22 1 1508 421 291 140 0 chr5 121052003 121052182 -31485077 - MER58A DNA MER1_type -19 205 2 1 1508 225 0 0 0 chr5 121052592 121052617 -31484642 + (TGGGGG)n Simple_repeat Simple_repeat 6 30 0 1 1508 528 216 25 17 chr5 121053234 121053352 -31483907 + RSINE1 SINE B4 1 119 -46 1 1508 225 0 0 0 chr5 121053389 121053414 -31483845 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1508 634 256 0 30 chr5 121053663 121053832 -31483427 + RSINE1 SINE B4 2 165 0 1 1508 26 30 0 0 chr5 121053852 121053885 -31483374 + AT_rich Low_complexity Low_complexity 1 33 0 1 1508 674 116 80 0 chr5 121054098 121054210 -31483049 - B1_Mur2 SINE Alu -6 143 23 1 1508 39 0 0 0 chr5 121054257 121054296 -31482963 + AT_rich Low_complexity Low_complexity 1 39 0 1 1508 408 55 0 0 chr5 121054318 121054373 -31482886 - B2_Mm2 SINE B2 -94 101 47 1 1508 1377 69 11 0 chr5 121054423 121054597 -31482662 - B2_Mm1t SINE B2 -14 179 4 1 1508 1016 198 81 5 chr5 121054604 121054802 -31482457 - B3 SINE B2 -3 213 1 1 1508 458 61 15 0 chr5 121054904 121054970 -31482289 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1508 420 158 0 31 chr5 121055650 121055748 -31481511 + GA-rich Low_complexity Low_complexity 2 96 0 1 1508 244 261 14 14 chr5 121055910 121055980 -31481279 - ORR1E LTR MaLR -283 76 7 1 1508 1076 267 26 11 chr5 121056085 121056354 -31480905 + B4A SINE B4 6 278 -14 1 1508 459 0 0 0 chr5 121056356 121056407 -31480852 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1508 330 270 0 51 chr5 121056874 121056991 -31480268 + GA-rich Low_complexity Low_complexity 5 115 0 1 1508 403 262 0 0 chr5 121057508 121057588 -31479671 - B1F1 SINE Alu -55 94 15 1 1508 250 274 22 67 chr5 121057511 121057601 -31479658 - 4.5SRNA scRNA scRNA -8 86 1 1 1508 675 171 23 30 chr5 121057671 121057804 -31479455 + B1_Mur3 SINE Alu 18 149 0 1 1508 472 301 77 0 chr5 121057838 121057981 -31479278 - B3A SINE B2 -38 160 7 1 1508 713 235 53 105 chr5 121057990 121058218 -31479041 - B3 SINE B2 0 216 1 1 1508 347 138 15 44 chr5 121058746 121058814 -31478445 - ID4_ SINE ID -11 72 7 1 1508 623 239 0 50 chr5 121060269 121060410 -31476849 + RSINE1 SINE B4 3 136 -29 1 1508 1394 68 11 6 chr5 121060542 121060720 -31476539 + B2_Mm1t SINE B2 1 179 -14 1 1508 344 113 0 5 chr5 121060813 121060875 -31476384 + B2_Mm2 SINE B2 50 109 -107 1 1508 213 39 0 0 chr5 121060900 121060926 -31476333 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1508 278 235 0 0 chr5 121060995 121061046 -31476213 + MTE2a LTR MaLR 3 53 -326 1 1508 441 282 133 7 chr5 121061207 121061350 -31475909 + MTE2a LTR MaLR 219 379 0 1 1508 257 208 33 163 chr5 121061929 121061959 -31475300 - B1F SINE Alu -30 119 40 1 1508 268 246 0 16 chr5 121061959 121062021 -31475238 - ID_B1 SINE B4 -43 181 121 1 1508 762 236 0 41 chr5 121063962 121064045 -31473214 + ID SINE ID 2 77 -147 1 1508 288 263 29 87 chr5 121064045 121064149 -31473110 + PB1D7 SINE Alu 4 101 -19 1 1508 1226 41 0 51 chr5 121064326 121064465 -31472794 + B1_Mus1 SINE Alu 1 139 -9 1 1508 245 29 29 0 chr5 121064465 121064499 -31472760 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1508 1226 41 0 51 chr5 121064499 121064515 -31472744 + B1_Mus1 SINE Alu 140 148 0 1 1508 330 138 0 0 chr5 121064606 121064664 -31472595 + (T)n Simple_repeat Simple_repeat 1 58 0 1 1508 1237 68 0 0 chr5 121064667 121064814 -31472445 - B1_Mm SINE Alu 0 147 1 1 1508 446 202 32 40 chr5 121064894 121065018 -31472241 - B1_Mus1 SINE Alu -25 123 1 1 1508 344 219 0 40 chr5 121064950 121065026 -31472233 - B4A SINE B4 -142 150 78 1 1508 523 130 3 19 chr5 121065043 121065147 -31472112 - PB1D9 SINE Alu 0 120 17 1 1508 383 319 59 0 chr5 121065183 121065302 -31471957 - ID_B1 SINE B4 -13 211 86 1 1508 364 274 35 17 chr5 121065395 121065510 -31471749 + PB1D10 SINE Alu 1 117 0 1 1508 368 106 13 20 chr5 121065550 121065661 -31471598 - B2_Mm2 SINE B2 0 195 47 1 1508 1243 109 23 6 chr5 121065746 121065921 -31471338 - B2_Mm1t SINE B2 -14 179 2 1 1508 474 318 23 82 chr5 121065957 121066176 -31471083 + B3 SINE B2 1 206 -10 1 1508 328 233 53 53 chr5 121066721 121066816 -31470443 + B1F SINE Alu 18 112 -37 1 1508 300 282 84 7 chr5 121067485 121067628 -31469631 + L1M5 LINE L1 5219 5372 -774 1 1508 281 300 17 60 chr5 121067830 121067947 -31469312 + ID_B1 SINE B4 65 176 -48 1 1508 336 218 22 22 chr5 121067863 121067952 -31469307 + PB1D10 SINE Alu 12 100 -17 1 1508 277 203 0 59 chr5 121071420 121071488 -31465771 - MIR SINE MIR -140 122 59 1 1508 361 304 0 0 chr5 121072411 121072422 -31464837 + ID SINE ID 71 81 -143 1 1508 419 290 0 0 chr5 121072422 121072529 -31464730 + PB1D10 SINE Alu 1 107 -10 1 1508 233 269 107 36 chr5 121072458 121072570 -31464689 + MT2B LTR ERVL 194 313 -288 1 1508 464 314 37 11 chr5 121072650 121072837 -31464422 - MER58A DNA MER1_type 0 224 33 1 1508 186 315 14 14 chr5 121074330 121074404 -31462855 + MIRc SINE MIR 51 124 -144 1 1508 261 267 139 0 chr5 121074881 121074967 -31462292 + B1F SINE Alu 41 138 -11 1 1508 328 244 30 22 chr5 121075000 121075100 -31462159 + B1_Mur3 SINE Alu 14 103 -17 1 1508 423 214 45 0 chr5 121075100 121075189 -31462070 + B3A SINE B2 38 130 -68 1 1508 330 26 0 0 chr5 121075199 121075238 -31462021 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1508 297 0 0 0 chr5 121075238 121075270 -31461989 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1508 273 284 0 15 chr5 121078578 121078659 -31458600 - B1F SINE Alu -29 91 12 1 1508 782 172 20 46 chr5 121078666 121078818 -31458441 - B1_Mur3 SINE Alu 0 149 2 1 1508 261 246 0 17 chr5 121079313 121079371 -31457888 + ID_B1 SINE B4 154 210 -14 1 1508 656 215 0 8 chr5 121080449 121080580 -31456679 + B1F SINE Alu 10 139 -10 1 1508 615 120 36 27 chr5 121080628 121080739 -31456520 + PB1D9 SINE Alu 9 120 0 1 1508 189 0 0 0 chr5 121080745 121080766 -31456493 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 1 1508 300 296 25 0 chr5 121080782 121080863 -31456396 + ID_B1 SINE B4 140 222 -2 1 1508 22 0 0 0 chr5 121080932 121080954 -31456305 + AT_rich Low_complexity Low_complexity 1 22 0 1 1508 195 139 0 0 chr5 121080987 121081023 -31456236 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1508 649 249 26 68 chr5 121082008 121082198 -31455061 - B3A SINE B2 -2 196 15 1 1508 336 271 31 0 chr5 121082764 121082860 -31454399 - PB1D10 SINE Alu -1 116 18 1 1508 319 308 0 11 chr5 121082788 121082880 -31454379 - ID_B1 SINE B4 -54 170 80 1 1508 201 358 39 45 chr5 121082882 121083037 -31454222 - L2b LINE L2 -4 3371 3218 1 1508 1317 93 16 11 chr5 121083087 121083271 -31453988 + B2_Mm2 SINE B2 2 186 -9 1 1508 340 274 12 12 chr5 121084634 121084719 -31452540 + PB1D9 SINE Alu 29 113 -7 1 1508 523 256 0 33 chr5 121085399 121085520 -31451739 + PB1D9 SINE Alu 2 118 -2 1 1508 270 0 0 0 chr5 121085544 121085574 -31451685 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1508 2596 145 11 48 chr5 121085666 121086101 -31451158 + MTC LTR MaLR 3 421 0 1 1508 291 297 54 11 chr5 121086132 121086224 -31451035 - PB1D10 SINE Alu -9 108 13 1 1508 225 348 0 21 chr5 121086428 121086522 -31450737 - L1ME1 LINE L1 -18 6161 6070 1 1508 796 162 7 0 chr5 121086582 121086718 -31450541 + B1_Mm SINE Alu 9 145 -2 1 1508 218 0 94 0 chr5 121086718 121086750 -31450509 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1 1508 214 138 67 33 chr5 121086751 121086811 -31450448 + (CAGAGA)n Simple_repeat Simple_repeat 4 65 0 1 1508 640 111 55 12 chr5 121086811 121087148 -31450111 + (CAGA)n Simple_repeat Simple_repeat 1 351 0 1 1508 236 82 61 0 chr5 121087150 121087199 -31450060 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 1 1508 354 367 54 20 chr5 121087279 121087482 -31449777 - MIRb SINE MIR -58 210 1 1 1508 777 167 115 6 chr5 121088185 121088342 -31448917 + MTD LTR MaLR 6 179 -240 1 1508 232 221 97 56 chr5 121088350 121088422 -31448837 + MTD LTR MaLR 285 359 -60 1 1508 983 103 0 20 chr5 121088490 121088638 -31448621 - B1_Mur4 SINE Alu 0 150 6 2 1508 264 197 136 0 chr5 121088905 121088971 -31448288 - ID_B1 SINE B4 -3 221 147 2 1508 327 25 0 0 chr5 121088973 121089013 -31448246 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2 1508 1635 42 0 0 chr5 121089016 121089205 -31448054 - B2_Mm1a SINE B2 -3 190 2 2 1508 898 161 14 0 chr5 121089217 121089360 -31447899 - B1_Mur4 SINE Alu -5 145 1 2 1508 337 292 53 89 chr5 121089379 121089548 -31447711 - RSINE1 SINE B4 -2 163 1 2 1508 1051 230 11 72 chr5 121089831 121090123 -31447136 + B4A SINE B4 15 290 -2 2 1508 392 285 0 6 chr5 121090138 121090318 -31446941 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1508 259 269 15 0 chr5 121090344 121090474 -31446785 + (CA)n Simple_repeat Simple_repeat 1 132 0 2 1508 198 0 0 0 chr5 121090563 121090585 -31446674 + (TC)n Simple_repeat Simple_repeat 2 23 0 2 1508 477 0 0 0 chr5 121090586 121090639 -31446620 + (CA)n Simple_repeat Simple_repeat 2 54 0 2 1508 702 255 156 0 chr5 121091067 121091259 -31446000 + ID_B1 SINE B4 1 222 -2 2 1508 1202 90 0 0 chr5 121091268 121091434 -31445825 + B2_Mm2 SINE B2 1 166 -29 2 1508 21 0 0 0 chr5 121091930 121091951 -31445308 + AT_rich Low_complexity Low_complexity 1 21 0 2 1508 456 206 87 10 chr5 121091973 121092076 -31445183 - PB1D9 SINE Alu -7 113 3 2 1508 199 0 65 0 chr5 121092243 121092274 -31444985 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1508 247 291 0 71 chr5 121092398 121092483 -31444776 - ID2 SINE ID 0 83 5 2 1508 1305 110 39 0 chr5 121092502 121092684 -31444575 + B2_Mm2 SINE B2 3 191 -4 2 1508 563 276 40 27 chr5 121092803 121092952 -31444307 - B4A SINE B4 -137 155 5 2 1508 389 325 99 44 chr5 121092962 121093339 -31443920 - L2a LINE L2 -9 3417 2958 2 1508 477 217 0 1 chr5 121093378 121093494 -31443765 - PB1D7 SINE Alu 0 120 6 2 1508 1285 118 0 39 chr5 121094598 121094762 -31442497 + B2_Mm2 SINE B2 1 164 -31 2 1508 1187 89 0 9 chr5 121094762 121094990 -31442269 + (GAAA)n Simple_repeat Simple_repeat 1 225 0 2 1508 1285 118 0 39 chr5 121094990 121095027 -31442232 + B2_Mm2 SINE B2 165 194 -1 2 1508 261 172 0 65 chr5 121095058 121095120 -31442139 - PB1D9 SINE Alu 0 120 63 2 1508 414 0 0 0 chr5 121095126 121095172 -31442087 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 2 1508 797 90 0 0 chr5 121095174 121095285 -31441974 - B1_Mus2 SINE Alu -6 141 31 2 1508 560 101 0 11 chr5 121095357 121095447 -31441812 + (TTCC)n Simple_repeat Simple_repeat 3 91 0 2 1508 361 201 244 61 chr5 121095455 121095619 -31441640 - B2_Mm2 SINE B2 0 195 2 2 1508 1078 106 99 0 chr5 121095619 121095780 -31441479 - B2_Mm1t SINE B2 -14 179 3 2 1508 1035 84 0 0 chr5 121095780 121095923 -31441336 + (TTTC)n Simple_repeat Simple_repeat 3 145 0 2 1508 182 256 70 0 chr5 121096317 121096360 -31440899 - MIRb SINE MIR -14 254 209 2 1508 280 353 4 8 chr5 121096431 121096544 -31440715 - MIR SINE MIR -70 198 81 2 1508 584 215 0 0 chr5 121096629 121096736 -31440523 - ID_B1 SINE B4 -26 198 92 2 1508 369 223 125 10 chr5 121096784 121096888 -31440371 - PB1D10 SINE Alu -1 116 1 2 1508 297 0 0 0 chr5 121097564 121097597 -31439662 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1508 230 180 0 20 chr5 121097666 121097717 -31439542 + G-rich Low_complexity Low_complexity 4 53 0 2 1508 377 335 21 90 chr5 121098250 121098483 -31438776 - MIR SINE MIR 0 262 46 2 1508 192 322 21 62 chr5 121098608 121098704 -31438555 + MIRb SINE MIR 171 262 -6 2 1508 477 243 9 0 chr5 121101964 121102071 -31435188 - PB1 SINE Alu -2 125 18 2 1508 286 265 122 0 chr5 121102278 121102376 -31434883 - BC1_Mm scRNA scRNA -40 112 3 2 1508 268 297 40 63 chr5 121102701 121102827 -31434432 + MIR SINE MIR 59 184 -84 2 1508 405 0 0 0 chr5 121103205 121103250 -31434009 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1508 248 240 0 78 chr5 121104040 121104126 -31433133 + L2a LINE L2 3022 3101 -286 2 1508 471 63 0 0 chr5 121104345 121104408 -31432851 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1508 243 0 0 0 chr5 121104470 121104497 -31432762 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 1508 435 38 0 0 chr5 121104507 121104560 -31432699 + (GA)n Simple_repeat Simple_repeat 1 53 0 2 1508 269 278 16 65 chr5 121105382 121105505 -31431754 - PB1D10 SINE Alu 0 117 1 2 1508 183 259 86 0 chr5 121105703 121105761 -31431498 - MIRb SINE MIR -142 126 64 2 1508 225 0 0 0 chr5 121105815 121105840 -31431419 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 1508 192 214 0 0 chr5 121105932 121105988 -31431271 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 1508 202 211 0 0 chr5 121106006 121106044 -31431215 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1508 357 179 0 0 chr5 121106091 121106175 -31431084 + (TG)n Simple_repeat Simple_repeat 1 84 0 2 1508 1014 147 131 0 chr5 121106266 121106457 -31430802 - B3 SINE B2 0 216 1 2 1508 231 253 130 50 chr5 121106469 121106569 -31430690 - PB1D10 SINE Alu -8 109 2 2 1508 826 160 21 7 chr5 121106867 121107012 -31430247 - B1_Mus1 SINE Alu 0 148 2 2 1508 210 208 21 0 chr5 121107220 121107268 -31429991 + B1F SINE Alu 1 49 -100 2 1508 303 266 66 59 chr5 121107390 121107526 -31429733 - MT2B LTR ERVL -297 304 168 2 1508 374 269 77 0 chr5 121107427 121107438 -31429821 - ID_B1 SINE B4 -33 191 82 2 1508 485 187 44 0 chr5 121107438 121107529 -31429730 - B1_Mm SINE Alu -52 95 1 2 1508 525 182 0 0 chr5 121108106 121108205 -31429054 - URR1B DNA MER1_type -6 219 121 2 1508 630 265 40 46 chr5 121108204 121108438 -31428821 - MTE2a LTR MaLR -157 222 29 2 1508 357 179 0 0 chr5 121108734 121108818 -31428441 + (TG)n Simple_repeat Simple_repeat 2 85 0 2 1508 480 228 0 0 chr5 121108838 121109009 -31428250 + (TG)n Simple_repeat Simple_repeat 1 171 0 2 1508 559 172 6 6 chr5 121109024 121109188 -31428071 + (TG)n Simple_repeat Simple_repeat 2 165 0 2 1508 284 332 56 88 chr5 121109225 121109456 -31427803 + MIR SINE MIR 31 260 -16 2 1508 423 0 0 0 chr5 121109457 121109504 -31427755 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1508 826 251 80 24 chr5 121109692 121109904 -31427355 + ID_B1 SINE B4 1 224 0 2 1508 805 183 0 0 chr5 121110054 121110196 -31427063 - B1_Mur4 SINE Alu -1 149 8 2 1508 863 122 0 0 chr5 121110232 121110363 -31426896 - B1_Mur4 SINE Alu 0 150 20 2 1508 371 176 35 121 chr5 121110268 121110384 -31426875 - MT2B LTR ERVL -338 263 158 2 1509 180 0 0 0 chr5 121111023 121111043 -31426216 + (TGG)n Simple_repeat Simple_repeat 1 20 0 2 1509 259 342 61 79 chr5 121111230 121111338 -31425921 - MIR SINE MIR -48 214 106 2 1509 887 102 0 7 chr5 121111338 121111476 -31425783 + (TCTCC)n Simple_repeat Simple_repeat 5 141 0 2 1509 878 92 137 0 chr5 121111476 121111607 -31425652 - B1_Mur4 SINE Alu 0 150 2 2 1509 259 342 61 79 chr5 121111607 121111662 -31425597 - MIR SINE MIR -157 105 54 2 1509 208 281 58 12 chr5 121111755 121111856 -31425403 + MIR SINE MIR 105 219 -57 2 1509 270 346 9 9 chr5 121112521 121112626 -31424633 - MIRb SINE MIR -78 190 86 2 1509 232 302 0 16 chr5 121113243 121113307 -31423952 - ID4_ SINE ID 0 83 21 2 1509 207 318 30 0 chr5 121114252 121114318 -31422941 + MIRc SINE MIR 60 127 -141 2 1509 217 284 43 60 chr5 121115011 121115127 -31422132 + MIRc SINE MIR 30 143 -125 2 1509 220 233 167 0 chr5 121115375 121115435 -31421824 - MIR SINE MIR -165 103 34 2 1509 319 342 162 1 chr5 121115501 121115667 -31421592 + MIR SINE MIR 14 203 -65 2 1509 195 292 55 14 chr5 121115703 121115776 -31421483 - L2a LINE L2 -341 3085 3010 2 1509 231 347 0 0 chr5 121115996 121116166 -31421093 + G-rich Low_complexity Low_complexity 1 170 0 2 1509 483 213 23 45 chr5 121116606 121116739 -31420520 - HAL1-2a_MD LINE L1 -518 2506 2377 2 1509 265 304 133 44 chr5 121116821 121117015 -31420244 - MER102c DNA MER1_type 0 331 141 2 1509 364 271 0 50 chr5 121117081 121117182 -31420077 - PB1D10 SINE Alu -1 116 21 2 1509 236 336 34 42 chr5 121117099 121117217 -31420042 - ID_B1 SINE B4 -45 179 63 2 1509 1113 101 6 11 chr5 121117217 121117398 -31419861 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2 1509 448 168 5 12 chr5 121117651 121117744 -31419515 + PB1D10 SINE Alu 5 99 -21 2 1509 252 59 0 0 chr5 121117807 121117841 -31419418 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1509 414 279 8 36 chr5 121117847 121117989 -31419270 - B3A SINE B2 -74 142 1 2 1509 203 163 70 0 chr5 121118141 121118184 -31419075 - MIRc SINE MIR -126 142 97 2 1509 342 0 0 0 chr5 121118489 121118527 -31418732 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1509 276 176 0 56 chr5 121118535 121118589 -31418670 - ID_B1 SINE B4 -20 204 154 2 1509 1368 196 14 106 chr5 121118587 121118904 -31418355 - MTD LTR MaLR -81 338 22 2 1509 362 303 49 8 chr5 121118904 121118936 -31418323 - B1F1 SINE Alu -21 128 97 2 1509 387 0 0 0 chr5 121118936 121118979 -31418280 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1509 362 303 49 8 chr5 121118979 121119069 -31418190 - B1F1 SINE Alu -53 96 3 2 1509 217 307 79 11 chr5 121119069 121119104 -31418155 - B4 SINE B4 -207 85 45 2 1509 616 183 46 66 chr5 121119134 121119286 -31417973 - B1F1 SINE Alu 0 149 1 2 1509 224 261 0 44 chr5 121119689 121119757 -31417502 + MIRm SINE MIR 120 184 -92 2 1509 306 183 141 0 chr5 121119955 121120026 -31417233 + MIRb SINE MIR 44 124 -144 2 1509 232 279 44 0 chr5 121120079 121120147 -31417112 - MIRb SINE MIR -83 185 115 2 1509 713 199 0 8 chr5 121120422 121120688 -31416571 + (TG)n Simple_repeat Simple_repeat 1 263 0 2 1509 756 188 0 0 chr5 121120701 121120986 -31416273 + (TG)n Simple_repeat Simple_repeat 1 285 0 2 1509 488 255 20 0 chr5 121121017 121121119 -31416140 - B1F SINE Alu -45 104 1 2 1509 354 272 0 0 chr5 121121138 121121219 -31416040 - ID4_ SINE ID -2 81 1 2 1509 293 288 12 0 chr5 121121946 121122026 -31415233 + ID4 SINE ID 2 82 -1 3 1509 856 274 37 5 chr5 121122079 121122295 -31414964 + B4A SINE B4 7 229 -63 3 1509 1230 48 0 0 chr5 121122296 121122442 -31414817 + B1_Mus2 SINE Alu 2 147 0 3 1509 234 62 0 0 chr5 121122442 121122474 -31414785 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1509 187 268 10 10 chr5 121122519 121122617 -31414642 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 1509 302 264 6 30 chr5 121122660 121122828 -31414431 + (CATA)n Simple_repeat Simple_repeat 2 165 0 3 1509 1005 71 0 14 chr5 121122922 121123065 -31414194 + B1_Mus2 SINE Alu 6 146 -1 3 1509 886 188 216 0 chr5 121123088 121123264 -31413995 + B3 SINE B2 3 216 0 3 1509 267 226 32 0 chr5 121123468 121123530 -31413729 + B1_Mur1 SINE Alu 80 143 -6 3 1509 282 259 170 36 chr5 121124009 121124121 -31413138 - L2b LINE L2 -227 3148 3022 3 1509 405 39 0 0 chr5 121125022 121125073 -31412186 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1509 228 228 0 0 chr5 121125196 121125253 -31412006 + (ATG)n Simple_repeat Simple_repeat 3 59 0 3 1509 339 312 29 22 chr5 121125750 121125953 -31411306 + MIR SINE MIR 13 209 -53 3 1509 678 283 72 22 chr5 121126332 121126623 -31410636 - MTD LTR MaLR -15 404 21 3 1509 829 246 84 0 chr5 121126990 121127181 -31410078 - ID_B1 SINE B4 -16 208 2 3 1509 225 326 0 33 chr5 121127182 121127274 -31409985 - BC1_Mm scRNA scRNA -50 102 14 3 1509 947 178 189 36 chr5 121127374 121127656 -31409603 - ORR1D1 LTR MaLR -1 373 41 3 1509 251 216 0 26 chr5 121127697 121127773 -31409486 - ORR1D1 LTR MaLR -259 135 62 3 1509 270 214 14 0 chr5 121127819 121127889 -31409370 - ORR1B1 LTR MaLR -248 146 76 3 1509 367 306 156 2 chr5 121128100 121128284 -31408975 + MIR SINE MIR 44 267 -1 3 1509 311 292 63 31 chr5 121128277 121128436 -31408823 + MIR SINE MIR 74 237 -25 3 1509 311 253 0 44 chr5 121128464 121128555 -31408704 - HAL1-2a_MD LINE L1 -622 2402 2316 3 1509 187 31 62 0 chr5 121130091 121130123 -31407136 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 3 1509 286 268 12 24 chr5 121131646 121131730 -31405529 + Charlie8 DNA MER1_type 71 153 -2275 3 1509 363 244 67 12 chr5 121131742 121131891 -31405368 + MIRb SINE MIR 20 179 -83 3 1509 803 120 17 8 chr5 121131891 121132009 -31405250 + PB1D9 SINE Alu 2 120 0 3 1509 355 302 99 19 chr5 121132009 121132037 -31405222 + MIR SINE MIR 180 205 -57 3 1509 261 83 0 0 chr5 121132037 121132073 -31405186 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 3 1509 980 236 28 9 chr5 121133969 121134187 -31403072 - ID_B1 SINE B4 -1 223 2 3 1509 186 360 51 26 chr5 121134461 121134578 -31402681 + MIRb SINE MIR 38 157 -111 3 1509 213 292 0 0 chr5 121134650 121134698 -31402561 + (CACCAT)n Simple_repeat Simple_repeat 4 51 0 3 1509 533 291 0 7 chr5 121134720 121134862 -31402397 + HAL1-2a_MD LINE L1 2350 2490 -534 3 1509 209 109 125 0 chr5 121134924 121134988 -31402271 + GA-rich Low_complexity Low_complexity 4 75 0 3 1509 314 242 160 45 chr5 121135382 121135538 -31401721 - MER117 DNA MER1_type -2 195 22 3 1509 234 386 126 10 chr5 121136119 121136318 -31400941 + L2a LINE L2 2924 3145 -281 3 1509 398 324 50 0 chr5 121137426 121137605 -31399654 - MER117 DNA MER1_type -4 193 6 3 1509 255 374 53 8 chr5 121137607 121137739 -31399520 - MIR3 SINE MIR -58 150 13 3 1509 761 222 83 6 chr5 121138857 121139038 -31398221 + ID_B1 SINE B4 2 196 -28 3 1509 522 0 0 0 chr5 121139116 121139174 -31398085 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1509 220 219 15 44 chr5 121139182 121139250 -31398009 + L2a LINE L2 3026 3090 -297 3 1509 701 221 28 28 chr5 121139357 121139501 -31397758 - RSINE1 SINE B4 -19 146 3 3 1509 363 283 75 0 chr5 121139501 121139607 -31397652 - PB1D9 SINE Alu -1 119 6 3 1509 243 0 0 0 chr5 121139634 121139661 -31397598 + (TTA)n Simple_repeat Simple_repeat 3 29 0 3 1509 900 88 52 0 chr5 121139698 121139834 -31397425 - B1_Mus1 SINE Alu 0 148 6 3 1509 558 235 35 95 chr5 121139700 121139869 -31397390 - B4 SINE B4 -69 223 65 3 1509 264 345 44 43 chr5 121140183 121140348 -31396911 - MIR3 SINE MIR -97 171 5 3 1509 182 281 35 0 chr5 121140804 121140861 -31396398 + MIR SINE MIR 77 135 -73 3 1509 233 318 77 8 chr5 121140926 121141056 -31396203 - MIRb SINE MIR -64 204 66 3 1509 606 270 19 13 chr5 121142362 121142516 -31394743 + RSINE1 SINE B4 11 165 0 3 1509 386 20 20 0 chr5 121142525 121142576 -31394683 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1509 534 43 0 0 chr5 121142632 121142701 -31394558 + (TG)n Simple_repeat Simple_repeat 2 70 0 3 1509 563 252 129 0 chr5 121142702 121142849 -31394410 - B3 SINE B2 -50 166 1 3 1509 335 289 162 49 chr5 121142852 121142994 -31394265 - B4A SINE B4 -96 196 39 3 1509 343 257 59 111 chr5 121143497 121143650 -31393609 + B4 SINE B4 77 221 -71 3 1509 884 76 15 8 chr5 121143522 121143655 -31393604 + B1_Mus1 SINE Alu 15 148 0 3 1509 373 241 23 0 chr5 121143778 121143865 -31393394 + RSINE1 SINE B4 8 96 -69 3 1509 183 42 0 0 chr5 121143969 121143993 -31393266 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1509 288 0 0 0 chr5 121143993 121144024 -31393235 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 1509 243 239 44 15 chr5 121144046 121144114 -31393145 + B4A SINE B4 1 70 -222 3 1509 230 191 43 0 chr5 121144121 121144168 -31393091 + (CGTG)n Simple_repeat Simple_repeat 3 51 0 3 1509 315 259 13 112 chr5 121144175 121144327 -31392932 + B4A SINE B4 80 216 -76 3 1509 596 240 0 0 chr5 121145225 121145350 -31391909 + RSINE1 SINE B4 3 127 -38 3 1509 22 56 0 0 chr5 121145350 121145386 -31391873 + AT_rich Low_complexity Low_complexity 1 36 0 3 1509 255 133 0 0 chr5 121145751 121145796 -31391463 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 3 1509 958 256 4 34 chr5 121146280 121146519 -31390740 + MTEa LTR MaLR 6 237 -142 3 1509 294 278 159 0 chr5 121146559 121146692 -31390567 + MTEa LTR MaLR 221 377 -2 3 1509 186 43 0 0 chr5 121146773 121146796 -31390463 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1509 1047 98 14 0 chr5 121146797 121146940 -31390319 - B1_Mm SINE Alu -2 145 1 3 1509 187 337 23 11 chr5 121147189 121147276 -31389983 + L2b LINE L2 2330 2417 -1002 3 1509 328 312 131 49 chr5 121147455 121147799 -31389460 + L2b LINE L2 2986 3357 -18 3 1509 235 288 27 27 chr5 121148213 121148288 -31388971 + MIR3 SINE MIR 96 170 -38 3 1509 274 357 13 60 chr5 121148496 121148645 -31388614 + MIRb SINE MIR 123 264 -4 3 1509 270 95 0 0 chr5 121149676 121149718 -31387541 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 3 1509 231 88 0 0 chr5 121151324 121151358 -31385901 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1509 444 90 51 51 chr5 121151940 121152116 -31385143 + (TGAA)n Simple_repeat Simple_repeat 4 179 0 3 1509 894 161 29 0 chr5 121152269 121152406 -31384853 + B1_Mur2 SINE Alu 4 144 -5 3 1509 444 161 75 11 chr5 121152566 121152660 -31384599 - PB1D7 SINE Alu -2 118 19 3 1509 246 298 0 78 chr5 121152576 121152678 -31384581 - MT2B LTR ERVL -339 262 169 3 1509 292 343 74 46 chr5 121152684 121152901 -31384358 - MIR SINE MIR -13 249 27 3 1509 313 271 128 30 chr5 121153454 121153587 -31383672 + YREP_Mm Unknown Unknown 149 294 -1518 3 1509 929 225 44 15 chr5 121153472 121153675 -31383584 - ID_B1 SINE B4 0 224 16 3 1509 276 282 11 21 chr5 121154086 121154202 -31383057 + CT-rich Low_complexity Low_complexity 1 114 0 3 1509 387 287 17 9 chr5 121154865 121154981 -31382278 - MIRb SINE MIR -70 198 82 3 1509 267 240 11 68 chr5 121155554 121155669 -31381590 + MIRc SINE MIR 49 152 -56 3 1509 320 290 66 14 chr5 121156021 121156161 -31381098 + MIR SINE MIR 41 188 -74 3 1509 293 244 0 89 chr5 121156385 121156475 -31380784 + ID4 SINE ID 2 83 0 3 1509 540 309 92 10 chr5 121157034 121157240 -31380019 + MER58B DNA MER1_type 72 294 -47 3 1509 629 218 7 15 chr5 121157419 121157554 -31379705 - ID_B1 SINE B4 -2 222 89 3 1509 208 329 0 26 chr5 121158455 121158578 -31378681 + L2a LINE L2 3007 3124 -251 3 1509 248 308 72 65 chr5 121159732 121159957 -31377302 - MIR3 SINE MIR -36 240 13 3 1509 21 0 0 0 chr5 121161198 121161219 -31376040 + GC_rich Low_complexity Low_complexity 1 21 0 3 1509 277 308 75 21 chr5 121161807 121161900 -31375359 + MIRm SINE MIR 179 276 0 3 1509 222 331 59 86 chr5 121162367 121162519 -31374740 - MIR3 SINE MIR -47 161 14 3 1509 360 0 0 0 chr5 121162528 121162568 -31374691 + (TCC)n Simple_repeat Simple_repeat 2 41 0 3 1509 288 277 135 51 chr5 121162726 121162882 -31374377 - MIRb SINE MIR -93 175 7 3 1509 591 15 0 0 chr5 121163178 121163246 -31374013 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 3 1509 352 202 11 63 chr5 121163696 121163791 -31373468 + RSINE1 SINE B4 1 90 -75 3 1509 254 292 41 10 chr5 121164585 121164682 -31372577 - L1MB4 LINE L1 -1 6179 6080 3 1509 362 353 70 102 chr5 121164835 121165207 -31372052 + MTEa LTR MaLR 17 376 -3 3 1509 251 154 15 0 chr5 121165320 121165385 -31371874 + (TCTG)n Simple_repeat Simple_repeat 2 67 0 3 1509 912 112 6 16 chr5 121165388 121165570 -31371689 + (TC)n Simple_repeat Simple_repeat 1 180 0 3 1509 378 328 34 8 chr5 121166031 121166148 -31371111 - RSINE1 SINE B4 -18 147 28 3 1509 304 88 0 34 chr5 121166296 121166355 -31370904 + (TCCC)n Simple_repeat Simple_repeat 1 57 0 3 1509 947 243 54 25 chr5 121166355 121166666 -31370593 - MLT2D LTR ERVL -69 328 5 3 1509 1355 74 11 0 chr5 121167810 121167985 -31369274 - B2_Mm1t SINE B2 -14 179 3 3 1509 265 327 82 19 chr5 121168164 121168323 -31368936 - MLT1D LTR MaLR -213 292 124 4 1509 694 275 65 53 chr5 121168339 121168593 -31368666 + RLTR26 LTR ERVK 5 308 -334 4 1509 261 0 0 0 chr5 121168593 121168622 -31368637 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 1509 694 282 110 50 chr5 121168622 121168729 -31368530 + RLTR26 LTR ERVK 309 411 -231 4 1509 1220 140 43 19 chr5 121169108 121169319 -31367940 - B3 SINE B2 0 216 1 4 1509 382 310 42 22 chr5 121169349 121169474 -31367785 + ORR1D2 LTR MaLR 39 145 -214 4 1509 1149 239 23 62 chr5 121169474 121169778 -31367481 - B4 SINE B4 0 292 1 4 1509 382 324 120 39 chr5 121169778 121169998 -31367261 + ORR1D2 LTR MaLR 122 366 -4 4 1509 390 338 44 40 chr5 121170029 121170254 -31367005 + MIRb SINE MIR 34 259 -9 4 1509 396 0 0 0 chr5 121170534 121170578 -31366681 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1509 576 77 0 0 chr5 121170854 121170932 -31366327 + (TGGA)n Simple_repeat Simple_repeat 1 78 0 4 1509 1818 198 73 5 chr5 121171007 121171388 -31365871 - MTD LTR MaLR 0 419 13 4 1509 228 298 21 78 chr5 121171419 121171561 -31365698 + G-rich Low_complexity Low_complexity 5 138 0 4 1509 330 255 19 10 chr5 121171562 121171580 -31365679 - L1MEd LINE L1 -5051 1068 1050 4 1509 1418 80 27 0 chr5 121171580 121171767 -31365492 - B2_Mm1t SINE B2 0 193 2 4 1509 330 255 19 10 chr5 121171767 121171851 -31365408 - L1MEd LINE L1 -5070 1049 966 4 1509 486 49 0 0 chr5 121171974 121172035 -31365224 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1509 234 277 77 0 chr5 121172040 121172105 -31365154 - B4A SINE B4 -15 277 208 4 1509 281 372 42 82 chr5 121172087 121172418 -31364841 - MLT1L LTR MaLR -55 555 238 4 1509 284 263 67 48 chr5 121172670 121172774 -31364485 + MER45R DNA Tip100 1 106 -1475 4 1509 799 306 118 3 chr5 121173257 121173572 -31363687 - Lx8 LINE L1 -187 7286 6936 4 1509 390 242 38 37 chr5 121173572 121173763 -31363496 - L1M4 LINE L1 -1438 4708 4507 4 1509 1037 109 14 0 chr5 121173819 121173966 -31363293 + B1_Mur4 SINE Alu 2 150 0 4 1509 883 175 11 5 chr5 121174005 121174389 -31362870 + GA-rich Low_complexity Low_complexity 1 386 0 4 1509 1312 232 19 44 chr5 121174389 121174705 -31362554 - MTE2b LTR MaLR -55 324 17 4 1509 415 296 0 90 chr5 121174565 121174721 -31362538 - MT2A LTR ERVL -387 146 5 4 1509 387 0 0 0 chr5 121174721 121174764 -31362495 + (TC)n Simple_repeat Simple_repeat 2 44 0 4 1509 378 0 0 0 chr5 121174764 121174805 -31362454 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1509 358 311 104 47 chr5 121174808 121175000 -31362259 - B4A SINE B4 -85 207 5 4 1509 273 313 21 63 chr5 121175008 121175151 -31362108 - YREP_Mm Unknown Unknown -1490 322 186 4 1509 684 189 0 8 chr5 121175033 121175156 -31362103 + ID_B1 SINE B4 99 220 -4 4 1509 657 0 0 0 chr5 121175602 121175675 -31361584 + (GA)n Simple_repeat Simple_repeat 1 73 0 4 1509 265 327 22 0 chr5 121176028 121176132 -31361127 + MIR SINE MIR 49 160 -116 4 1509 205 200 0 20 chr5 121176314 121176365 -31360894 + T-rich Low_complexity Low_complexity 1 50 0 4 1509 336 267 96 106 chr5 121176636 121176854 -31360405 + B4A SINE B4 77 292 0 4 1509 210 174 0 0 chr5 121176904 121176950 -31360309 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1509 396 0 0 0 chr5 121177067 121177111 -31360148 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1509 378 0 0 0 chr5 121177111 121177152 -31360107 + (CA)n Simple_repeat Simple_repeat 1 42 0 4 1509 689 304 11 0 chr5 121177587 121177768 -31359491 + B4A SINE B4 1 183 -109 4 1509 22 0 0 0 chr5 121177784 121177806 -31359453 + GC_rich Low_complexity Low_complexity 1 22 0 4 1509 1333 91 6 6 chr5 121177807 121177983 -31359276 + B2_Mm1t SINE B2 4 179 -14 4 1509 304 122 365 9 chr5 121178049 121178156 -31359103 + B2_Mm2 SINE B2 47 191 -4 4 1509 319 226 16 0 chr5 121178169 121178231 -31359028 + B4 SINE B4 222 284 -8 4 1509 554 269 7 22 chr5 121179179 121179316 -31357943 - RSINE1 SINE B4 -29 136 2 4 1509 402 329 111 58 chr5 121180136 121180226 -31357033 - MER21B LTR ERV1 -293 570 477 4 1509 1079 62 0 0 chr5 121180226 121180355 -31356904 + B1_Mus1 SINE Alu 1 129 -19 4 1509 402 329 111 58 chr5 121180355 121180680 -31356579 - MER21B LTR ERV1 -387 476 134 4 1509 719 176 92 0 chr5 121181998 121182129 -31355130 + B1_Mur2 SINE Alu 5 147 -2 4 1509 258 0 23 45 chr5 121182307 121182351 -31354908 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 1509 245 214 229 19 chr5 121182351 121182450 -31354809 + MER20 DNA MER1_type 84 206 -13 4 1509 366 320 77 67 chr5 121182718 121182912 -31354347 - B4A SINE B4 0 292 97 4 1509 366 23 0 0 chr5 121183244 121183287 -31353972 + (GA)n Simple_repeat Simple_repeat 2 44 0 4 1509 728 137 186 0 chr5 121184170 121184294 -31352965 + B1_Mur3 SINE Alu 3 149 0 4 1509 213 360 17 67 chr5 121184326 121184445 -31352814 - ID_B1 SINE B4 -83 141 29 4 1509 499 242 46 15 chr5 121184452 121184582 -31352677 + RSINE1 SINE B4 24 157 -8 4 1509 447 19 0 0 chr5 121184681 121184733 -31352526 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1509 216 0 0 0 chr5 121184881 121184905 -31352354 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 4 1509 324 0 0 0 chr5 121185932 121185968 -31351291 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1509 1058 223 37 0 chr5 121186254 121186469 -31350790 - ID_B1 SINE B4 0 224 2 4 1509 537 271 19 101 chr5 121186518 121186727 -31350532 - B3A SINE B2 -13 203 12 4 1509 1383 85 26 21 chr5 121186760 121186952 -31350307 - B2_Mm2 SINE B2 0 195 3 4 1509 242 312 61 52 chr5 121187076 121187191 -31350068 - MER3 DNA MER1_type -13 196 81 4 1509 539 301 120 24 chr5 121187259 121187467 -31349792 + MTD LTR MaLR 156 383 -36 4 1509 257 299 131 0 chr5 121187467 121187574 -31349685 - B4A SINE B4 -1 291 171 4 1509 1195 61 0 13 chr5 121187776 121187925 -31349334 - B1_Mus1 SINE Alu -1 147 1 4 1509 244 0 0 53 chr5 121189005 121189043 -31348216 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4 1509 1612 237 78 26 chr5 121189295 121189720 -31347539 + RMER19C LTR ERVK 165 611 0 4 1509 444 252 56 0 chr5 121189875 121189982 -31347277 + B3 SINE B2 1 113 -103 4 1509 877 42 8 8 chr5 121190183 121190302 -31346957 + (TCTCC)n Simple_repeat Simple_repeat 1 119 0 4 1509 248 304 51 0 chr5 121190432 121190511 -31346748 + MLT1D LTR MaLR 8 90 -377 4 1509 2059 79 30 59 chr5 121190586 121190923 -31346336 + ORR1A2 LTR MaLR 1 327 0 4 1509 333 264 16 97 chr5 121190947 121191103 -31346156 + MLT1D LTR MaLR 316 505 0 4 1509 946 161 0 0 chr5 121191334 121191471 -31345788 + B1_Mur1 SINE Alu 2 138 -11 4 1509 641 286 70 54 chr5 121191656 121191915 -31345344 + B4A SINE B4 16 278 -14 4 1509 914 220 69 22 chr5 121191983 121192202 -31345057 + B4 SINE B4 2 231 -61 4 1509 880 233 14 46 chr5 121192202 121192385 -31344874 + B3 SINE B2 2 180 -36 4 1509 1358 103 11 0 chr5 121192385 121192570 -31344689 + B2_Mm1t SINE B2 2 188 -5 4 1509 880 233 14 46 chr5 121192570 121192602 -31344657 + B3 SINE B2 181 210 -6 4 1509 256 261 13 115 chr5 121192606 121192684 -31344575 + B4A SINE B4 221 290 -2 4 1509 215 213 0 0 chr5 121193427 121193474 -31343785 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1509 326 291 0 3 chr5 121193503 121193791 -31343468 + (TG)n Simple_repeat Simple_repeat 1 286 0 4 1509 550 329 56 36 chr5 121193791 121193822 -31343437 - B4A SINE B4 0 292 266 4 1509 347 69 35 0 chr5 121193822 121193880 -31343379 + (CAGA)n Simple_repeat Simple_repeat 2 61 0 4 1509 550 329 56 36 chr5 121193880 121194100 -31343159 - B4A SINE B4 -27 265 36 4 1509 237 346 122 5 chr5 121194232 121194421 -31342838 + L1M5 LINE L1 5609 5819 -343 4 1509 615 217 101 0 chr5 121194515 121194644 -31342615 + RSINE1 SINE B4 3 144 -21 4 1509 25 0 0 0 chr5 121194670 121194695 -31342564 + AT_rich Low_complexity Low_complexity 1 25 0 4 1509 525 232 159 99 chr5 121194700 121194856 -31342403 - B3 SINE B2 -3 213 35 4 1509 264 30 0 0 chr5 121194856 121194889 -31342370 + (TC)n Simple_repeat Simple_repeat 1 33 0 4 1509 1064 94 98 30 chr5 121194890 121195054 -31342205 - B2_Mm2 SINE B2 -18 177 3 4 1509 525 232 159 99 chr5 121195054 121195096 -31342163 - B3 SINE B2 -182 34 1 4 1509 233 333 38 25 chr5 121195099 121195179 -31342080 - ID_B1 SINE B4 -58 166 86 4 1509 194 0 0 161 chr5 121195345 121195519 -31341740 + (CAGGG)n Simple_repeat Simple_repeat 3 148 0 4 1509 247 102 222 63 chr5 121195530 121195593 -31341666 + PB1D9 SINE Alu 42 114 -6 4 1509 267 87 0 42 chr5 121195602 121195650 -31341609 + RLTR10C LTR ERVK 345 390 -46 4 1509 429 141 0 0 chr5 121196001 121196072 -31341187 + (CGTG)n Simple_repeat Simple_repeat 4 74 0 4 1509 672 244 126 36 chr5 121196904 121197181 -31340078 - ORR1E LTR MaLR -55 304 3 4 1509 365 204 17 23 chr5 121197460 121197504 -31339755 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 4 1509 501 84 0 0 chr5 121197504 121197575 -31339684 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 4 1509 1170 196 12 16 chr5 121197575 121198019 -31339240 + (TCCA)n Simple_repeat Simple_repeat 1 442 0 4 1509 948 211 226 35 chr5 121198118 121198432 -31338827 + ORR1D1 LTR MaLR 1 374 0 4 1509 385 298 101 0 chr5 121199140 121199343 -31337916 - MIR SINE MIR -13 249 30 4 1509 192 222 36 18 chr5 121200275 121200330 -31336929 - MIRm SINE MIR -143 133 78 4 1509 35 0 0 0 chr5 121200415 121200450 -31336809 + AT_rich Low_complexity Low_complexity 1 35 0 4 1509 314 212 30 0 chr5 121200497 121200563 -31336696 - PB1D10 SINE Alu -10 107 40 4 1509 600 228 88 51 chr5 121201644 121201861 -31335398 + URR1B DNA MER1_type 1 225 0 4 1509 528 322 64 17 chr5 121202638 121202872 -31334387 - RMER15 LTR ERVL -4 571 327 4 1509 3266 61 10 0 chr5 121203054 121203450 -31333809 - MTB LTR MaLR 0 400 1 4 1509 324 213 17 34 chr5 121203785 121203960 -31333299 + (CATA)n Simple_repeat Simple_repeat 4 175 0 4 1509 252 236 0 0 chr5 121204008 121204097 -31333162 + (CA)n Simple_repeat Simple_repeat 2 90 0 4 1509 523 215 11 0 chr5 121204119 121204296 -31332963 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1509 241 303 0 29 chr5 121204817 121204885 -31332374 - MER117 DNA MER1_type -26 171 106 4 1509 210 280 0 184 chr5 121205169 121205242 -31332017 - PB1D10 SINE Alu -8 109 55 4 1509 1062 214 24 14 chr5 121205242 121205455 -31331804 - B3 SINE B2 0 216 2 5 1509 210 280 0 184 chr5 121205455 121205495 -31331764 - PB1D10 SINE Alu -63 54 17 4 1509 1065 197 19 0 chr5 121205512 121205725 -31331534 - ID_B1 SINE B4 0 224 8 5 1509 298 299 26 53 chr5 121205747 121205860 -31331399 + MER53 DNA hAT 81 190 -3 5 1509 421 289 40 40 chr5 121206560 121206708 -31330551 - B1F SINE Alu -1 148 1 5 1509 948 88 49 1 chr5 121207619 121207779 -31329480 + B2_Mm2 SINE B2 1 199 -17 5 1509 438 20 0 0 chr5 121207779 121207830 -31329429 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 5 1509 821 144 224 6 chr5 121207830 121207843 -31329416 + B3 SINE B2 200 212 -4 5 1509 695 170 0 111 chr5 121207861 121208015 -31329244 + ORR1C2 LTR MaLR 29 165 -209 5 1509 186 43 0 0 chr5 121208015 121208038 -31329221 + (TCCC)n Simple_repeat Simple_repeat 2 24 0 5 1509 695 170 0 111 chr5 121208038 121208055 -31329204 + ORR1C2 LTR MaLR 166 181 -193 5 1509 553 203 16 33 chr5 121208084 121208267 -31328992 + CT-rich Low_complexity Low_complexity 1 180 0 5 1509 209 139 0 53 chr5 121208270 121208308 -31328951 + C-rich Low_complexity Low_complexity 3 38 0 5 1509 708 184 161 6 chr5 121208308 121208488 -31328771 + ORR1C2 LTR MaLR 175 382 -2 5 1509 210 313 0 15 chr5 121208488 121208541 -31328718 - B3A SINE B2 -146 52 1 5 1509 25 0 0 0 chr5 121208572 121208597 -31328662 + GC_rich Low_complexity Low_complexity 1 25 0 5 1509 606 294 136 24 chr5 121209066 121209119 -31328140 - B4A SINE B4 -7 285 219 5 1509 240 111 0 0 chr5 121209119 121209155 -31328104 + (CAT)n Simple_repeat Simple_repeat 2 37 0 5 1509 606 294 136 24 chr5 121209155 121209352 -31327907 - B4A SINE B4 -74 218 8 5 1509 688 170 13 13 chr5 121209511 121209660 -31327599 + GA-rich Low_complexity Low_complexity 2 150 0 5 1509 244 70 47 0 chr5 121209860 121209903 -31327356 + (CCCCCG)n Simple_repeat Simple_repeat 2 46 0 5 1509 287 193 0 17 chr5 121210650 121210708 -31326551 + MLT1A1 LTR MaLR 349 405 -3 5 1509 387 0 0 0 chr5 121210902 121210945 -31326314 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1509 542 214 15 31 chr5 121210986 121211116 -31326143 - RSINE1 SINE B4 -36 129 2 5 1509 4233 216 93 75 chr5 121212273 121213531 -31323728 - RMER12 LTR ERVK -41 1281 1 5 1509 368 257 44 35 chr5 121213546 121213659 -31323600 + RMER5 LTR ERV1 196 309 -225 5 1509 564 116 0 0 chr5 121213696 121213782 -31323477 + (TTTTC)n Simple_repeat Simple_repeat 4 89 0 5 1509 792 147 0 0 chr5 121213785 121213901 -31323358 - PB1D9 SINE Alu -4 116 1 5 1509 340 203 163 0 chr5 121213904 121214057 -31323202 + RMER5 LTR ERV1 350 527 -7 5 1509 180 111 0 0 chr5 121214218 121214245 -31323014 + (AGGGGG)n Simple_repeat Simple_repeat 3 29 0 5 1509 406 234 0 0 chr5 121214523 121214600 -31322659 - B1F1 SINE Alu -56 93 17 5 1509 198 289 0 0 chr5 121214651 121214696 -31322563 + MIRb SINE MIR 32 76 -192 5 1509 256 128 0 0 chr5 121214880 121214919 -31322340 + B3A SINE B2 1 39 -159 5 1509 1146 76 7 0 chr5 121214921 121215065 -31322194 + B1_Mus2 SINE Alu 2 146 -1 5 1509 213 140 0 109 chr5 121215066 121215130 -31322129 + A-rich Low_complexity Low_complexity 4 60 0 5 1509 459 297 40 33 chr5 121215135 121215285 -31321974 + B3 SINE B2 39 189 -27 5 1509 1247 93 35 0 chr5 121215415 121215587 -31321672 + B2_Mm1t SINE B2 2 179 -14 5 1509 293 102 321 53 chr5 121215653 121215765 -31321494 + B2_Mm2 SINE B2 47 188 -7 5 1509 1130 108 0 0 chr5 121216430 121216578 -31320681 - B1_Mus1 SINE Alu 0 148 1 5 1509 396 0 0 0 chr5 121216852 121216896 -31320363 + (TG)n Simple_repeat Simple_repeat 1 44 0 5 1509 402 21 0 0 chr5 121216896 121216942 -31320317 + (GA)n Simple_repeat Simple_repeat 1 47 0 5 1509 307 270 0 152 chr5 121216958 121217063 -31320196 - PB1D10 SINE Alu -26 91 3 5 1509 649 218 8 0 chr5 121217467 121217600 -31319659 + B1F SINE Alu 1 134 -15 5 1509 215 61 0 29 chr5 121217631 121217665 -31319594 + (GGA)n Simple_repeat Simple_repeat 2 34 0 5 1509 372 133 0 0 chr5 121217766 121217826 -31319433 + (GAA)n Simple_repeat Simple_repeat 1 60 0 5 1509 4302 150 112 41 chr5 121217896 121218744 -31318515 + RMER13B LTR ERVK 1 908 0 5 1509 286 338 86 55 chr5 121218748 121218911 -31318348 + Tigger5 DNA MER2_type 2239 2406 0 5 1509 1755 144 34 61 chr5 121220180 121220531 -31316728 + ORR1D1 LTR MaLR 3 348 -31 5 1509 630 0 0 0 chr5 121220531 121220601 -31316658 + (CATAG)n Simple_repeat Simple_repeat 4 73 0 5 1509 266 259 35 135 chr5 121220601 121220617 -31316642 + ORR1D1 LTR MaLR 349 364 -15 5 1509 353 317 13 80 chr5 121221918 121222069 -31315190 - ID_B1 SINE B4 -4 220 80 5 1509 335 271 62 0 chr5 121222249 121222345 -31314914 - MIRm SINE MIR -142 134 33 5 1509 330 275 61 18 chr5 121222688 121222851 -31314408 + L1M5 LINE L1 5202 5371 -775 5 1509 1212 48 0 13 chr5 121223391 121223540 -31313719 - B1_Mus1 SINE Alu 0 148 2 5 1509 1024 215 33 9 chr5 121224419 121224630 -31312629 - B3 SINE B2 0 216 1 5 1509 622 253 10 10 chr5 121224646 121224942 -31312317 + (TG)n Simple_repeat Simple_repeat 1 296 0 5 1509 245 317 89 0 chr5 121224942 121225043 -31312216 - RSINE1 SINE B4 0 165 56 5 1509 323 300 75 0 chr5 121225045 121225165 -31312094 - B4A SINE B4 -163 129 1 5 1509 2577 146 15 1 chr5 121225730 121226166 -31311093 + RLTR11A LTR ERVK 51 528 0 5 1509 209 297 94 52 chr5 121227027 121227123 -31310136 + MIRb SINE MIR 83 182 -80 5 1509 263 134 34 57 chr5 121228015 121228098 -31309161 + MIRc SINE MIR 84 172 -104 5 1509 330 342 25 8 chr5 121228141 121228259 -31309000 - MIR SINE MIR -141 121 2 5 1509 284 273 0 7 chr5 121228448 121228592 -31308667 + (TG)n Simple_repeat Simple_repeat 2 144 0 5 1509 207 218 0 0 chr5 121228617 121228672 -31308587 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1509 297 0 0 0 chr5 121228763 121228796 -31308463 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1509 270 0 0 0 chr5 121228796 121228825 -31308434 + (GA)n Simple_repeat Simple_repeat 1 30 0 5 1509 279 0 0 0 chr5 121229434 121229465 -31307794 + (TGG)n Simple_repeat Simple_repeat 3 33 0 5 1509 184 352 38 81 chr5 121229744 121229954 -31307305 + L2b LINE L2 3020 3220 -167 5 1509 650 292 103 19 chr5 121230004 121230325 -31306934 + RMER5 LTR ERV1 33 380 -154 5 1509 219 167 0 0 chr5 121230578 121230620 -31306639 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1509 319 247 13 4 chr5 121230620 121230854 -31306405 + (TCTG)n Simple_repeat Simple_repeat 1 236 0 5 1509 306 73 0 0 chr5 121230879 121231044 -31306215 + (TG)n Simple_repeat Simple_repeat 1 165 0 5 1509 453 309 122 27 chr5 121231044 121231307 -31305952 - B4A SINE B4 0 292 5 5 1509 1335 102 11 0 chr5 121231425 121231602 -31305657 + B2_Mm1t SINE B2 1 179 -14 5 1509 325 127 13 34 chr5 121231648 121231715 -31305544 + B2_Mm2 SINE B2 46 116 -82 5 1509 180 0 0 0 chr5 121231731 121231751 -31305508 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 5 1509 516 243 75 48 chr5 121231757 121231945 -31305314 + B3A SINE B2 25 213 -3 5 1509 204 205 26 0 chr5 121231949 121231988 -31305271 + C-rich Low_complexity Low_complexity 1 40 0 5 1509 1017 142 0 0 chr5 121231988 121232157 -31305102 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 5 1509 880 108 8 0 chr5 121232157 121232286 -31304973 - B1_Mus2 SINE Alu -10 137 8 5 1509 773 218 0 13 chr5 121232404 121232553 -31304706 + B1_Mur2 SINE Alu 2 148 -1 5 1509 2464 147 24 137 chr5 121232597 121233230 -31304029 + RLTR31_Mm LTR ERVK 1 561 0 5 1509 296 304 11 21 chr5 121235070 121235164 -31302095 + MTEb LTR MaLR 5 97 -282 5 1509 482 0 0 17 chr5 121235387 121235446 -31301813 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1509 272 167 0 0 chr5 121235567 121235609 -31301650 - ID4 SINE ID -30 53 12 5 1509 279 312 0 0 chr5 121235577 121235670 -31301589 - ZP3AR Satellite Satellite -74 138 46 5 1509 229 224 0 0 chr5 121236309 121236358 -31300901 + (TTTAA)n Simple_repeat Simple_repeat 5 53 0 5 1509 537 303 46 0 chr5 121237625 121237777 -31299482 - RSINE1 SINE B4 -4 161 3 5 1509 189 0 0 0 chr5 121237811 121237832 -31299427 + (CAAG)n Simple_repeat Simple_repeat 2 22 0 5 1509 330 262 173 8 chr5 121238247 121238374 -31298885 + MIRc SINE MIR 17 164 -104 5 1509 277 298 97 97 chr5 121239295 121239585 -31297674 + B4A SINE B4 1 290 -2 5 1509 286 253 13 13 chr5 121239777 121239853 -31297406 + L1MEd LINE L1 965 1040 -5079 5 1509 1037 216 135 38 chr5 121240014 121240384 -31296875 + MTD LTR MaLR 14 419 0 5 1509 995 273 112 39 chr5 121240384 121241361 -31295898 + MTD-int LTR MaLR 1 1255 -3 5 188 751 230 144 28 chr5 121241361 121241718 -31295541 + MTD LTR MaLR 15 415 -4 5 1510 543 301 93 68 chr5 121242364 121242642 -31294617 - B4A SINE B4 -4 288 4 5 1510 267 350 86 0 chr5 121243524 121243641 -31293618 + B4A SINE B4 93 219 -73 5 1510 337 286 45 23 chr5 121244449 121244645 -31292614 + L1MA4A LINE L1 5684 5917 -374 5 1510 423 0 0 0 chr5 121244664 121244711 -31292548 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1510 387 0 0 0 chr5 121245647 121245690 -31291569 + (CAA)n Simple_repeat Simple_repeat 2 44 0 5 1510 468 0 0 0 chr5 121245693 121245745 -31291514 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1510 228 405 0 0 chr5 121246060 121246171 -31291088 - PB1D10 SINE Alu -6 111 1 5 1510 402 282 29 0 chr5 121246302 121246405 -31290854 + PB1D10 SINE Alu 6 111 -6 5 1510 657 36 0 0 chr5 121246440 121246524 -31290735 + (CA)n Simple_repeat Simple_repeat 2 85 0 5 1510 2104 127 8 80 chr5 121246632 121246984 -31290275 + ORR1A2 LTR MaLR 1 327 0 5 1510 653 233 8 0 chr5 121247272 121247405 -31289854 - RSINE1 SINE B4 -29 136 3 5 1510 220 250 92 15 chr5 121247458 121247523 -31289736 - B1F1 SINE Alu -79 70 1 5 1510 462 254 43 9 chr5 121247901 121248016 -31289243 - Lx8 LINE L1 -131 7342 7224 5 1510 331 244 22 11 chr5 121248016 121248107 -31289152 + MTC LTR MaLR 1 92 -329 5 1510 620 341 28 4 chr5 121248107 121248354 -31288905 - Lx8 LINE L1 -671 6802 6550 5 1510 370 246 89 7 chr5 121248356 121248491 -31288768 - RMER5 LTR ERV1 -356 178 33 5 1510 224 328 43 81 chr5 121248541 121248750 -31288509 - L2c LINE L2 -167 3220 3020 6 1510 189 0 0 0 chr5 121250036 121250057 -31287202 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1510 291 54 0 0 chr5 121251701 121251738 -31285521 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1510 581 280 28 7 chr5 121251739 121251883 -31285376 - RSINE1 SINE B4 -16 149 3 6 1510 321 271 62 0 chr5 121252344 121252440 -31284819 + MIRc SINE MIR 19 120 -148 6 1510 252 328 97 50 chr5 121253383 121253662 -31283597 + B4A SINE B4 1 292 0 6 1510 818 255 74 16 chr5 121254006 121254249 -31283010 - RLTR16 LTR ERVK -234 271 15 6 1510 341 256 11 11 chr5 121254426 121254513 -31282746 + L1MEd LINE L1 965 1051 -5068 6 1510 1106 227 133 22 chr5 121254679 121255048 -31282211 + MTD LTR MaLR 6 415 -4 6 1510 609 247 193 18 chr5 121255116 121255339 -31281920 + MTD LTR MaLR 154 415 -4 6 1510 500 318 85 67 chr5 121256005 121256288 -31280971 - B4A SINE B4 0 292 5 6 1510 186 305 0 17 chr5 121256638 121256698 -31280561 + L2 LINE L2 2849 2907 -512 6 1510 208 0 62 0 chr5 121256783 121256815 -31280444 + (GGGTG)n Simple_repeat Simple_repeat 4 37 0 6 1510 407 292 65 91 chr5 121257211 121257441 -31279818 + B4 SINE B4 1 224 -68 6 1510 369 0 0 0 chr5 121257825 121257866 -31279393 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1510 333 0 0 0 chr5 121257866 121257902 -31279357 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1510 239 256 54 22 chr5 121258359 121258451 -31278808 + L1M1 LINE L1 5793 5887 -416 6 1510 225 119 0 0 chr5 121259098 121259140 -31278119 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1510 291 28 0 0 chr5 121259878 121259914 -31277345 + (CCCCCA)n Simple_repeat Simple_repeat 3 38 0 6 1510 219 103 0 0 chr5 121260017 121260056 -31277203 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1510 289 216 165 33 chr5 121260332 121260423 -31276836 + PB1D7 SINE Alu 18 120 0 6 1510 632 246 0 22 chr5 121260432 121260569 -31276690 + RSINE1 SINE B4 3 136 -29 6 1510 377 201 32 41 chr5 121260749 121260855 -31276404 + B3 SINE B2 1 106 -87 6 1510 515 238 0 164 chr5 121260869 121261040 -31276219 - B1_Mur2 SINE Alu -6 143 1 6 1510 324 102 0 0 chr5 121261809 121261858 -31275401 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1510 261 265 108 0 chr5 121261858 121261941 -31275318 - B3 SINE B2 -124 92 1 6 1510 257 247 34 34 chr5 121262166 121262254 -31275005 + L1MC2 LINE L1 6224 6311 -33 6 1510 199 294 37 5 chr5 121263045 121263123 -31274136 - MIR SINE MIR -89 187 98 6 1510 183 240 20 20 chr5 121263174 121263225 -31274034 + MIRm SINE MIR 85 135 -141 6 1510 679 269 5 35 chr5 121263437 121263637 -31273622 - B3A SINE B2 -2 196 3 6 1510 324 48 0 0 chr5 121264307 121264349 -31272910 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 6 1510 896 246 70 7 chr5 121264819 121265089 -31272170 - B4 SINE B4 -4 288 2 6 1510 2694 130 8 32 chr5 121265529 121265999 -31271260 - RMER6B LTR ERVK -2 459 1 6 1510 201 39 0 0 chr5 121266776 121266802 -31270457 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1510 557 328 64 26 chr5 121266895 121267161 -31270098 + B4A SINE B4 3 278 -14 6 1510 995 268 99 18 chr5 121267879 121268263 -31268996 - MTD LTR MaLR -4 415 1 6 1510 1837 251 162 15 chr5 121268263 121268936 -31268323 - MTD-int LTR MaLR -5 1575 635 6 1510 1773 157 40 149 chr5 121268915 121269385 -31267874 - RLTR23 LTR ERV1 -4 426 8 6 1510 947 258 32 36 chr5 121269462 121269771 -31267488 - MTD-int LTR MaLR -950 308 1 6 1510 1236 217 129 11 chr5 121269771 121270134 -31267125 - MTD LTR MaLR 0 419 14 6 1510 214 297 10 29 chr5 121270188 121270292 -31266967 + G-rich Low_complexity Low_complexity 2 103 0 6 1510 345 279 0 0 chr5 121270297 121270383 -31266876 - L1MEd LINE L1 -5069 1050 965 6 1510 282 291 76 118 chr5 121270558 121270862 -31266397 - B4A SINE B4 -1 291 1 6 1510 383 345 27 0 chr5 121270992 121271140 -31266119 - MER58A DNA MER1_type -52 172 21 6 1510 183 316 0 0 chr5 121271172 121271229 -31266030 - L2 LINE L2 -1883 1536 1480 6 1510 313 261 171 8 chr5 121271855 121271975 -31265284 - MIRc SINE MIR -53 155 19 6 1510 615 275 13 0 chr5 121272422 121272571 -31264688 + RSINE1 SINE B4 3 153 -12 6 1510 228 67 0 0 chr5 121272581 121272611 -31264648 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1510 213 146 0 0 chr5 121272707 121272755 -31264504 + (CA)n Simple_repeat Simple_repeat 1 48 0 6 1510 2142 92 16 3 chr5 121273900 121274215 -31263044 + ORR1A2 LTR MaLR 1 319 -8 6 1510 420 242 0 0 chr5 121274311 121274571 -31262688 + (TG)n Simple_repeat Simple_repeat 1 260 0 6 1510 1013 243 48 0 chr5 121274768 121275019 -31262240 - RLTR42-int LTR ERVK -4123 1399 1137 6 1510 2935 33 0 3 chr5 121275653 121275991 -31261268 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1510 7037 29 2 7 chr5 121275991 121276847 -31260412 - IAPEz-int LTR ERVK 0 6481 5630 6 1510 23994 33 35 12 chr5 121276833 121279834 -31257425 - IAPEz-int LTR ERVK -3405 3076 8 6 1510 2931 33 0 3 chr5 121279834 121280172 -31257087 - IAPLTR1a_Mm LTR ERVK 0 337 1 6 1510 2255 135 45 13 chr5 121280376 121280758 -31256501 - ORR1B1 LTR MaLR 0 394 1 6 1510 1093 181 38 61 chr5 121281037 121281333 -31255926 - ORR1A4 LTR MaLR -76 298 1 6 1510 317 356 71 43 chr5 121281405 121281616 -31255643 - RMER15 LTR ERVL -7 568 352 6 1510 2001 123 4 31 chr5 121281992 121282365 -31254894 + ORR1A2 LTR MaLR 1 346 0 6 1510 25 0 0 0 chr5 121282542 121282567 -31254692 + AT_rich Low_complexity Low_complexity 1 25 0 6 1510 475 88 310 26 chr5 121282634 121282750 -31254509 - B2_Mm2 SINE B2 0 195 47 6 1510 1333 91 11 0 chr5 121282840 121283016 -31254243 - B2_Mm1t SINE B2 -14 179 2 6 1510 238 130 42 42 chr5 121283181 121283253 -31254006 + (TTATA)n Simple_repeat Simple_repeat 5 76 0 6 1510 495 0 0 0 chr5 121285190 121285245 -31252014 + (TCC)n Simple_repeat Simple_repeat 2 56 0 6 1510 3911 178 17 45 chr5 121285247 121285505 -31251754 - RLTR22_Mur LTR ERVK -1055 793 535 6 1510 1093 59 15 0 chr5 121285505 121285640 -31251619 + B1_Mus1 SINE Alu 2 138 -10 6 1510 3911 178 17 45 chr5 121285640 121286197 -31251062 - RLTR22_Mur LTR ERVK -1314 534 1 6 1510 292 256 99 55 chr5 121286616 121286707 -31250552 + PB1D7 SINE Alu 21 115 -5 6 1510 261 0 0 0 chr5 121286707 121286736 -31250523 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 6 1510 661 224 31 133 chr5 121286858 121287084 -31250175 - B3 SINE B2 -10 206 4 6 1510 664 143 16 0 chr5 121287920 121288046 -31249213 + CT-rich Low_complexity Low_complexity 2 129 0 6 1510 228 354 0 20 chr5 121288047 121288148 -31249111 - PB1D9 SINE Alu -15 105 7 6 1510 567 221 0 0 chr5 121288148 121288306 -31248953 + (CA)n Simple_repeat Simple_repeat 2 159 0 6 1510 310 303 0 0 chr5 121289196 121289285 -31247974 + (TG)n Simple_repeat Simple_repeat 1 89 0 6 1510 205 162 0 0 chr5 121289284 121289321 -31247938 + GA-rich Low_complexity Low_complexity 1 37 0 6 1510 356 287 11 0 chr5 121289321 121289408 -31247851 + PB1D7 SINE Alu 28 115 -5 6 1510 352 252 58 10 chr5 121290398 121290502 -31246757 + PB1D7 SINE Alu 1 109 -11 6 1510 592 232 71 16 chr5 121290544 121290671 -31246588 + RSINE1 SINE B4 3 136 -29 6 1510 4172 65 2 6 chr5 121290966 121291492 -31245767 - L1_Mus2 LINE L1 0 6566 6043 6 1510 288 0 0 0 chr5 121291583 121291615 -31245644 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1510 2201 175 21 0 chr5 121291643 121292021 -31245238 - ORR1B1 LTR MaLR -8 386 1 6 1510 328 219 125 3 chr5 121292647 121292783 -31244476 - MIRb SINE MIR -37 171 19 6 1510 231 304 59 31 chr5 121294249 121294504 -31242755 - L1M5 LINE L1 -768 5378 5117 6 1510 306 0 0 0 chr5 121294751 121294785 -31242474 + (CA)n Simple_repeat Simple_repeat 1 34 0 6 1510 414 0 0 0 chr5 121294785 121294830 -31242429 + (GA)n Simple_repeat Simple_repeat 2 47 0 6 1510 447 287 31 0 chr5 121295157 121295286 -31241973 + RLTR18-int LTR ERVK 2529 2661 -2700 6 1510 342 241 36 36 chr5 121295350 121295462 -31241797 + RLTR18-int LTR ERVK 2877 2988 -2373 6 1510 1297 250 34 21 chr5 121295942 121296330 -31240929 + RLTR18-int LTR ERVK 3177 3569 -1792 6 1510 1067 87 112 34 chr5 121296386 121296564 -31240695 - B2_Mm2 SINE B2 -2 193 2 6 1510 987 230 30 25 chr5 121296755 121297043 -31240216 - RMER6A LTR ERVK 0 756 501 6 1510 264 111 0 0 chr5 121297052 121297097 -31240162 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1510 189 0 0 0 chr5 121298532 121298553 -31238706 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1510 633 115 0 0 chr5 121298908 121299004 -31238255 + (TTCC)n Simple_repeat Simple_repeat 1 96 0 6 1510 701 254 20 55 chr5 121299052 121299252 -31238007 - B4A SINE B4 -97 195 3 6 1510 609 61 0 0 chr5 121299515 121299597 -31237662 + (CA)n Simple_repeat Simple_repeat 2 83 0 6 1510 1381 77 16 0 chr5 121300269 121300451 -31236808 - B2_Mm1a SINE B2 -7 186 2 6 1510 330 45 0 0 chr5 121300651 121300695 -31236564 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1510 685 284 76 69 chr5 121300792 121301080 -31236179 + B4A SINE B4 3 292 0 6 1510 696 236 176 23 chr5 121301750 121301971 -31235288 - MTD LTR MaLR -4 415 161 6 1510 1176 219 96 88 chr5 121301942 121302177 -31235082 - BGLII_B LTR ERVK -63 378 124 6 1510 1238 29 0 0 chr5 121302177 121302315 -31234944 + B1_Mus1 SINE Alu 2 139 -9 6 1510 1176 219 96 88 chr5 121302315 121302454 -31234805 - BGLII_B LTR ERVK -318 123 1 6 1510 229 108 27 0 chr5 121302454 121302489 -31234770 - MTD LTR MaLR -376 45 10 6 1510 996 251 160 33 chr5 121302498 121302848 -31234411 - MTD-int LTR MaLR 0 1258 802 6 1510 7070 56 41 0 chr5 121302848 121303706 -31233553 + RLTR13B1 LTR ERVK 1 893 0 6 1510 996 265 116 28 chr5 121303706 121304012 -31233247 - MTD-int LTR MaLR -457 801 381 6 1510 1590 52 0 0 chr5 121304012 121304205 -31233054 - B2_Mm1t SINE B2 0 193 1 6 1510 846 295 73 33 chr5 121304205 121304370 -31232889 - MTD-int LTR MaLR -878 380 314 6 1510 380 253 0 0 chr5 121304538 121304625 -31232634 - L1MEd LINE L1 -5068 1051 965 6 1510 204 97 0 0 chr5 121304791 121304822 -31232437 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1510 334 297 80 63 chr5 121304839 121305126 -31232133 - B4A SINE B4 0 292 1 6 1510 212 262 125 10 chr5 121305732 121305836 -31231423 - MIRb SINE MIR -34 234 119 6 1510 326 272 94 3 chr5 121306049 121306184 -31231075 - MIRc SINE MIR -38 170 19 6 1510 744 268 25 0 chr5 121306651 121306808 -31230451 + RSINE1 SINE B4 3 163 -2 7 1510 418 255 13 0 chr5 121306810 121306963 -31230296 + (CA)n Simple_repeat Simple_repeat 1 155 0 7 1510 231 269 70 0 chr5 121306988 121307063 -31230196 - MIR SINE MIR -140 128 40 6 1510 257 109 0 21 chr5 121308021 121308068 -31229191 + (GGGGA)n Simple_repeat Simple_repeat 1 46 0 7 1510 450 0 0 0 chr5 121308135 121308185 -31229074 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1510 1096 71 21 0 chr5 121308243 121308384 -31228875 + B1_Mus2 SINE Alu 1 144 -3 7 1510 215 257 91 18 chr5 121308871 121308959 -31228300 - B1F SINE Alu 0 117 28 7 1510 225 0 0 0 chr5 121308959 121308984 -31228275 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1510 189 175 0 0 chr5 121309670 121309710 -31227549 + (CAGA)n Simple_repeat Simple_repeat 3 42 0 7 1510 224 175 211 0 chr5 121309925 121309982 -31227277 + RSINE1 SINE B4 68 136 -29 7 1510 526 155 17 0 chr5 121310353 121310469 -31226790 + (TG)n Simple_repeat Simple_repeat 2 119 0 7 1510 261 0 0 0 chr5 121310469 121310498 -31226761 + (GA)n Simple_repeat Simple_repeat 1 29 0 7 1510 303 287 69 0 chr5 121310499 121310586 -31226673 - B1F SINE Alu -51 98 6 7 1510 214 286 62 52 chr5 121310744 121310840 -31226419 + PB1D7 SINE Alu 18 114 -6 7 1510 228 35 0 0 chr5 121312892 121312921 -31224338 + (TCTG)n Simple_repeat Simple_repeat 4 32 0 7 1510 8205 34 1 2 chr5 121313244 121314846 -31222413 - L1Md_F2 LINE L1 0 6582 4982 7 1510 544 323 6 51 chr5 121314973 121315149 -31222110 - B4A SINE B4 -124 168 1 7 1510 585 308 81 32 chr5 121316308 121316556 -31220703 + B4A SINE B4 11 270 -22 7 1510 918 268 173 31 chr5 121317259 121317617 -31219642 - MTD LTR MaLR 0 419 11 7 1510 1559 262 290 19 chr5 121317629 121318593 -31218666 - MTD-int LTR MaLR -149 1109 1 7 1510 1225 219 123 22 chr5 121318593 121318958 -31218301 - MTD LTR MaLR 0 419 18 7 1510 301 289 0 0 chr5 121319114 121319197 -31218062 - L1MEd LINE L1 -5072 1047 965 7 1510 457 290 52 95 chr5 121319399 121319630 -31217629 - B4A SINE B4 0 292 69 7 1510 5313 139 75 19 chr5 121319630 121320537 -31216722 - RMER17B LTR ERVK 0 958 1 7 1510 457 290 52 95 chr5 121320537 121320610 -31216649 - B4A SINE B4 -224 68 1 7 1510 335 224 181 1 chr5 121321540 121321671 -31215588 - MIR SINE MIR -42 166 19 7 1510 710 255 25 0 chr5 121322125 121322282 -31214977 + RSINE1 SINE B4 3 163 -2 7 1510 200 163 0 23 chr5 121323532 121323576 -31213683 + CT-rich Low_complexity Low_complexity 1 43 0 7 1510 248 186 0 0 chr5 121324328 121324371 -31212888 + tRNA-Ala-GCY_ tRNA tRNA 5 47 -28 7 1510 192 135 0 0 chr5 121324492 121324529 -31212730 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1510 420 20 0 0 chr5 121326066 121326115 -31211144 + (TG)n Simple_repeat Simple_repeat 1 49 0 7 1510 292 247 23 69 chr5 121326115 121326202 -31211057 + PB1D10 SINE Alu 28 110 -7 7 1510 214 267 120 0 chr5 121327086 121327161 -31210098 + PB1D10 SINE Alu 23 106 -11 7 1510 228 324 143 9 chr5 121327724 121327836 -31209423 + MIRb SINE MIR 2 128 -140 7 1510 308 223 10 0 chr5 121327861 121327964 -31209295 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 1510 639 271 26 0 chr5 121328006 121328157 -31209102 - RSINE1 SINE B4 -6 159 5 7 1510 309 219 194 34 chr5 121328613 121328738 -31208521 + MIRb SINE MIR 19 164 -104 7 1510 272 365 25 19 chr5 121329412 121329571 -31207688 + MER58B DNA MER1_type 153 312 -29 7 1510 303 316 67 93 chr5 121329680 121329980 -31207279 + B4A SINE B4 1 292 0 7 1510 315 279 0 0 chr5 121330177 121330256 -31207003 + L1MEd LINE L1 965 1043 -5076 7 1510 282 244 36 24 chr5 121330421 121330505 -31206754 + MTD LTR MaLR 14 98 -321 7 1510 1626 258 179 36 chr5 121330487 121331436 -31205823 + MTD-int LTR MaLR 41 1258 0 7 1510 909 280 95 16 chr5 121331436 121331824 -31205435 + MTD LTR MaLR 1 419 0 7 1510 285 29 0 0 chr5 121332642 121332676 -31204583 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1510 12478 86 20 5 chr5 121332900 121334833 -31202426 + MusHAL1 LINE L1 120 2080 -632 7 1510 1191 75 0 0 chr5 121335177 121335324 -31201935 - B1_Mm SINE Alu 0 147 1 7 1510 21 0 0 0 chr5 121335583 121335604 -31201655 + AT_rich Low_complexity Low_complexity 1 21 0 7 1510 200 281 18 0 chr5 121335653 121335710 -31201549 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1510 234 62 0 0 chr5 121336159 121336191 -31201068 + (TGGA)n Simple_repeat Simple_repeat 2 33 0 7 1510 664 240 40 76 chr5 121336663 121336861 -31200398 + B3A SINE B2 6 196 -2 7 1510 211 275 101 0 chr5 121337068 121337137 -31200122 - MIRm SINE MIR -138 138 56 7 1510 183 333 0 0 chr5 121337156 121337204 -31200055 + MIR SINE MIR 96 143 -65 7 1510 207 0 0 0 chr5 121337797 121337820 -31199439 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1510 320 260 21 10 chr5 121338398 121338495 -31198764 - PB1D10 SINE Alu -19 98 1 7 1510 2097 136 65 86 chr5 121338500 121339003 -31198256 + BGLII_B LTR ERVK 5 436 -5 7 1510 186 43 0 0 chr5 121339782 121339805 -31197454 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1510 213 367 39 66 chr5 121341067 121341248 -31196011 + L2b LINE L2 3020 3195 -180 7 1510 411 293 90 0 chr5 121341430 121341618 -31195641 + Lx8 LINE L1 6535 6739 -734 7 1510 292 254 50 83 chr5 121341620 121341740 -31195519 - MTC LTR MaLR -305 116 1 7 1510 369 249 184 24 chr5 121341747 121341953 -31195306 + Lx8 LINE L1 7231 7469 -4 7 1510 269 235 104 38 chr5 121342229 121342335 -31194924 + PB1D7 SINE Alu 1 113 -7 7 1510 468 236 143 18 chr5 121342355 121342467 -31194792 + RSINE1 SINE B4 11 136 -29 7 1510 1698 91 24 28 chr5 121342753 121342937 -31194322 - ORR1A2 LTR MaLR 0 327 142 7 1510 2771 66 143 139 chr5 121342937 121343447 -31193812 - RLTR1B LTR ERV1 0 512 1 7 1510 1698 91 24 28 chr5 121343447 121343512 -31193747 - ORR1A2 LTR MaLR -186 141 79 7 1510 372 32 0 46 chr5 121343514 121343579 -31193680 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1510 6159 79 11 103 chr5 121344372 121345355 -31191904 + RLTR13B1 LTR ERVK 1 893 0 7 1510 323 278 0 37 chr5 121346107 121346199 -31191060 + B1F SINE Alu 25 113 -7 7 1510 214 267 120 0 chr5 121347083 121347158 -31190101 + PB1D10 SINE Alu 23 106 -11 7 1510 209 286 41 72 chr5 121347722 121347836 -31189423 + MIR SINE MIR 1 128 -140 7 1510 317 214 10 0 chr5 121347861 121347964 -31189295 + (TG)n Simple_repeat Simple_repeat 2 105 0 7 1510 658 274 26 0 chr5 121348006 121348159 -31189100 - RSINE1 SINE B4 -6 159 3 7 1510 230 228 251 27 chr5 121348623 121348733 -31188526 + MIRc SINE MIR 37 164 -104 7 1510 272 360 10 0 chr5 121349415 121349515 -31187744 + Cheshire DNA MER1_type 180 280 -2140 7 1510 373 376 45 41 chr5 121349653 121349944 -31187315 + B4A SINE B4 1 292 0 7 1510 335 274 66 16 chr5 121350097 121350218 -31187041 + L1MEd LINE L1 952 1065 -5160 7 1510 345 217 24 24 chr5 121350396 121350481 -31186778 + MTD LTR MaLR 14 98 -321 7 1510 1454 252 160 40 chr5 121350466 121351420 -31185839 + MTC-int LTR MaLR 46 1098 0 7 1510 1022 298 93 13 chr5 121351420 121351808 -31185451 + MTD LTR MaLR 1 419 0 7 1510 225 0 0 0 chr5 121352638 121352663 -31184596 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1510 189 0 0 0 chr5 121352663 121352683 -31184576 + (GA)n Simple_repeat Simple_repeat 1 21 0 7 1510 11595 92 35 15 chr5 121352945 121354860 -31182399 + MusHAL1 LINE L1 128 2080 -632 7 1510 28 48 0 0 chr5 121354996 121355038 -31182221 + AT_rich Low_complexity Low_complexity 1 42 0 7 1510 21 0 0 0 chr5 121355412 121355433 -31181826 + AT_rich Low_complexity Low_complexity 1 21 0 7 1510 273 57 0 0 chr5 121355979 121356014 -31181245 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 7 1510 219 88 0 0 chr5 121356175 121356209 -31181050 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1510 423 0 0 0 chr5 121356209 121356255 -31181004 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 1510 636 258 37 78 chr5 121356539 121356758 -31180501 + B3A SINE B2 6 196 -2 7 1510 188 277 177 9 chr5 121356960 121357073 -31180186 - MIRm SINE MIR -138 138 1 7 1510 317 271 50 50 chr5 121357890 121357991 -31179268 - L1MEg LINE L1 -4140 1944 1844 7 1510 538 65 10 42 chr5 121358009 121358105 -31179154 - L1Md_F2 LINE L1 0 6582 6490 7 1510 335 250 21 10 chr5 121358485 121358582 -31178677 - PB1D10 SINE Alu -19 98 1 7 1510 2067 163 51 62 chr5 121358587 121359080 -31178179 + BGLII_B LTR ERVK 5 436 -5 7 1510 237 254 16 0 chr5 121359713 121359776 -31177483 + CT-rich Low_complexity Low_complexity 4 67 0 7 1510 351 0 0 0 chr5 121359853 121359892 -31177367 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1510 3483 61 28 2 chr5 121360112 121360537 -31176722 + RLTR10C LTR ERVK 1 436 0 7 1510 237 305 143 31 chr5 121360617 121360715 -31176544 - MLT2B1 LTR ERVL -234 286 178 7 1510 240 328 43 81 chr5 121361602 121361811 -31175448 + L2c LINE L2 3020 3220 -167 7 1510 364 246 89 7 chr5 121361858 121361993 -31175266 + RMER5 LTR ERV1 33 178 -356 7 1510 514 311 34 5 chr5 121361995 121362202 -31175057 + Lx8 LINE L1 6550 6762 -711 7 1510 341 240 18 88 chr5 121362219 121362333 -31174926 - MTC LTR MaLR -315 106 1 7 1510 412 236 53 35 chr5 121362333 121362447 -31174812 + Lx8 LINE L1 7224 7339 -134 7 1510 221 261 104 20 chr5 121362824 121362931 -31174328 + B1F2 SINE Alu 1 117 -3 7 1510 663 233 7 15 chr5 121362938 121363073 -31174186 + RSINE1 SINE B4 3 136 -29 7 1510 2494 68 12 6 chr5 121363366 121363691 -31173568 - ORR1A2 LTR MaLR 0 327 1 7 1510 244 233 16 16 chr5 121363782 121363843 -31173416 + (TG)n Simple_repeat Simple_repeat 1 61 0 7 1510 444 275 54 18 chr5 121363855 121363966 -31173293 - PB1D7 SINE Alu 0 120 6 7 1510 257 340 54 27 chr5 121364103 121364215 -31173044 + PB1D7 SINE Alu 1 115 -5 7 1510 729 0 0 0 chr5 121364458 121364539 -31172720 + (TG)n Simple_repeat Simple_repeat 1 81 0 8 1510 216 0 0 0 chr5 121364591 121364615 -31172644 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1510 183 214 24 0 chr5 121365154 121365196 -31172063 + MIR SINE MIR 95 137 -125 8 1510 207 0 0 0 chr5 121365457 121365480 -31171779 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1510 1125 81 0 26 chr5 121365482 121365634 -31171625 - B1_Mus1 SINE Alu 0 148 1 8 1510 207 0 0 0 chr5 121366025 121366048 -31171211 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1510 682 242 193 18 chr5 121367117 121367340 -31169919 - MTD LTR MaLR -4 415 154 8 1510 1136 216 131 25 chr5 121367408 121367768 -31169491 - MTD LTR MaLR -4 415 18 8 1510 1216 56 0 0 chr5 121367817 121367961 -31169298 + B1_Mus1 SINE Alu 1 144 -4 8 1510 438 20 0 0 chr5 121367961 121368012 -31169247 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 8 1510 296 301 0 0 chr5 121368133 121368216 -31169043 - L1MEd LINE L1 -5072 1047 965 8 1510 329 294 111 33 chr5 121368408 121368679 -31168580 - B4A SINE B4 0 292 1 8 1510 298 235 197 2 chr5 121369634 121369765 -31167494 - MIR SINE MIR -42 166 19 8 1510 495 261 92 0 chr5 121370228 121370370 -31166889 + RSINE1 SINE B4 3 157 -8 8 1510 190 316 120 20 chr5 121370404 121370504 -31166755 - MIRb SINE MIR -124 144 35 8 1510 239 234 0 0 chr5 121371674 121371721 -31165538 + CT-rich Low_complexity Low_complexity 1 47 0 8 1510 387 73 0 0 chr5 121371806 121371861 -31165398 + (CCA)n Simple_repeat Simple_repeat 2 56 0 8 1510 663 271 6 46 chr5 121372492 121372666 -31164593 - MT2B2 LTR ERVL 0 584 418 8 188 865 209 27 6 chr5 121372669 121372852 -31164407 - MERVL_2A-int LTR ERVL -1053 4708 4522 8 1511 2280 152 12 56 chr5 121373070 121373173 -31164086 + MTC LTR MaLR 26 120 -301 8 1511 1386 79 26 5 chr5 121373173 121373363 -31163896 - B2_Mm2 SINE B2 -1 194 1 8 1511 2280 152 12 56 chr5 121373363 121373671 -31163588 + MTC LTR MaLR 121 419 -2 8 1511 2235 138 45 13 chr5 121374624 121375006 -31162253 + ORR1B1 LTR MaLR 1 394 0 8 1511 945 249 43 4 chr5 121375616 121375870 -31161389 + RLTR42-int LTR ERVK 1137 1400 -4122 8 1511 555 215 0 0 chr5 121376080 121376252 -31161007 + (CA)n Simple_repeat Simple_repeat 2 173 0 8 1511 223 284 49 0 chr5 121376503 121376584 -31160675 + MIR SINE MIR 36 120 -88 8 1511 234 240 78 57 chr5 121376699 121376816 -31160443 + B1F SINE Alu 2 117 0 8 1511 222 303 66 0 chr5 121377450 121377526 -31159733 + MIR SINE MIR 40 120 -142 8 1511 420 37 0 0 chr5 121377583 121377637 -31159622 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1511 665 262 13 0 chr5 121377643 121377792 -31159467 - RSINE1 SINE B4 -12 153 3 8 1511 291 266 113 23 chr5 121378257 121378428 -31158831 + MIR SINE MIR 36 232 -44 8 1511 247 266 24 48 chr5 121379093 121379176 -31158083 + Cheshire DNA MER1_type 199 279 -2141 8 1511 397 322 76 72 chr5 121379297 121379588 -31157671 + B4A SINE B4 1 292 0 8 1511 328 287 0 0 chr5 121379768 121379855 -31157404 + L1MEd LINE L1 965 1051 -5068 8 1511 249 308 0 36 chr5 121379859 121379970 -31157289 + C-rich Low_complexity Low_complexity 2 108 0 8 1511 1320 199 124 30 chr5 121380016 121380388 -31156871 + MTD LTR MaLR 13 419 0 8 1511 1911 244 147 35 chr5 121380388 121381260 -31155999 + MTD-int LTR MaLR 1 1083 -175 8 1511 1734 26 0 0 chr5 121381260 121381453 -31155806 - B2_Mm1t SINE B2 0 193 1 8 1511 1911 261 96 25 chr5 121381453 121381614 -31155645 + MTD-int LTR MaLR 1084 1257 -1 8 1511 909 264 160 3 chr5 121381614 121381919 -31155340 + MTD LTR MaLR 14 367 -52 8 1511 810 310 62 22 chr5 121382224 121382498 -31154761 - B4A SINE B4 -5 287 3 8 1511 12444 84 25 41 chr5 121382535 121384410 -31152849 + RLTR22_Mur LTR ERVK 1 1844 -4 8 1511 7492 38 1 0 chr5 121384420 121385965 -31151294 - L1Md_F3 LINE L1 -75 6509 4963 8 1511 945 215 18 22 chr5 121385962 121386238 -31151021 - L1VL1 LINE L1 -6145 277 3 8 1511 253 241 37 0 chr5 121386238 121386292 -31150967 + B1F1 SINE Alu 84 139 -10 8 1511 427 245 0 10 chr5 121386299 121386390 -31150869 + B3 SINE B2 2 92 -124 8 1511 444 67 0 0 chr5 121386390 121386450 -31150809 + (CA)n Simple_repeat Simple_repeat 2 61 0 8 1511 238 250 0 0 chr5 121386477 121386533 -31150726 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1511 625 231 0 89 chr5 121387194 121387351 -31149908 + B1_Mur2 SINE Alu 1 143 -6 8 1511 394 180 32 43 chr5 121387378 121387471 -31149788 - B3 SINE B2 -124 92 1 8 1511 698 233 7 15 chr5 121387653 121387788 -31149471 - RSINE1 SINE B4 -29 136 3 8 1511 319 267 124 0 chr5 121387794 121387899 -31149360 - PB1D7 SINE Alu -2 118 1 8 1511 318 163 109 65 chr5 121388698 121388790 -31148469 + MER117 DNA MER1_type 47 142 -55 8 1511 241 292 81 89 chr5 121388771 121388895 -31148364 + MER117 DNA MER1_type 41 163 -34 8 1511 421 260 29 64 chr5 121389251 121389280 -31147979 + B1F SINE Alu 1 135 -14 8 1511 472 204 0 72 chr5 121389280 121389391 -31147868 + ID_B1 SINE B4 108 210 -14 8 1511 279 0 0 0 chr5 121389695 121389726 -31147533 + (TG)n Simple_repeat Simple_repeat 2 32 0 8 1511 640 288 23 36 chr5 121389739 121389959 -31147300 - B4A SINE B4 -2 290 74 8 1511 376 299 108 83 chr5 121389950 121390107 -31147152 - RSINE1 SINE B4 0 165 5 8 1511 338 286 55 0 chr5 121390108 121390199 -31147060 - B4A SINE B4 -196 96 1 8 1511 435 95 0 0 chr5 121391760 121391834 -31145425 + (TC)n Simple_repeat Simple_repeat 1 74 0 8 1511 516 145 32 33 chr5 121393428 121393560 -31143699 - B1F1 SINE Alu -2 147 17 8 1511 477 240 15 74 chr5 121393808 121393943 -31143316 + B1F1 SINE Alu 8 134 -16 8 1511 528 273 70 0 chr5 121393973 121394116 -31143143 - RSINE1 SINE B4 -10 155 3 8 1511 323 202 0 102 chr5 121394445 121394533 -31142726 - PB1D10 SINE Alu -3 114 36 8 1511 193 291 231 9 chr5 121395559 121395783 -31141476 + L2a LINE L2 2821 3094 -332 8 1511 360 0 0 0 chr5 121397995 121398035 -31139224 + (GA)n Simple_repeat Simple_repeat 2 41 0 8 1511 628 191 98 7 chr5 121398329 121398464 -31138795 - B1F SINE Alu -5 144 6 8 1511 268 295 199 15 chr5 121398489 121398620 -31138639 + MER2 DNA MER2_type 9 163 -182 8 1511 263 235 99 30 chr5 121399188 121399289 -31137970 - B1F1 SINE Alu -40 109 2 8 1511 338 304 0 12 chr5 121399542 121399712 -31137547 + (TATG)n Simple_repeat Simple_repeat 4 171 0 8 1511 309 51 0 0 chr5 121400022 121400061 -31137198 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1511 183 250 92 0 chr5 121400500 121400576 -31136683 + MIR SINE MIR 33 115 -147 8 1511 251 341 0 96 chr5 121401039 121401185 -31136074 + MIRb SINE MIR 124 255 -13 8 1511 429 20 0 0 chr5 121401656 121401706 -31135553 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1511 249 348 80 25 chr5 121402327 121402489 -31134770 + L2b LINE L2 3205 3375 0 8 1511 268 290 28 18 chr5 121402501 121402610 -31134649 + L2a LINE L2 3049 3158 -268 8 1511 1450 151 243 12 chr5 121403118 121403460 -31133799 + MTC LTR MaLR 1 421 0 8 1511 186 50 75 0 chr5 121404049 121404089 -31133170 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 8 1511 265 273 0 0 chr5 121404209 121404275 -31132984 + ID4 SINE ID 9 74 -9 8 1511 431 171 80 0 chr5 121404822 121404910 -31132349 + MIRb SINE MIR 86 180 -88 8 1511 461 303 16 33 chr5 121405081 121405265 -31131994 - MIR SINE MIR -46 216 36 8 1511 545 174 30 25 chr5 121406022 121406431 -31130828 + (CA)n Simple_repeat Simple_repeat 1 411 0 8 1511 316 261 24 105 chr5 121406568 121406692 -31130567 + PB1D10 SINE Alu 1 114 -3 8 1511 559 146 0 0 chr5 121406895 121406984 -31130275 + B1_Mur1 SINE Alu 54 142 -7 8 1511 288 204 77 27 chr5 121407024 121407118 -31130141 + PB1D7 SINE Alu 15 113 -7 8 1511 1291 286 70 59 chr5 121407155 121407853 -31129406 + L1MB3 LINE L1 5476 6181 -2 8 1511 336 300 96 83 chr5 121407882 121408122 -31129137 + MIRb SINE MIR 20 262 -6 8 1511 490 202 20 0 chr5 121408261 121408360 -31128899 + ORR1E LTR MaLR 18 118 -241 8 1511 344 269 9 63 chr5 121408541 121408652 -31128607 + PB1D10 SINE Alu 1 105 -12 8 1511 495 87 0 0 chr5 121408667 121408736 -31128523 + (TG)n Simple_repeat Simple_repeat 1 69 0 8 1511 558 0 0 0 chr5 121409547 121409609 -31127650 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 1511 569 312 45 40 chr5 121409841 121410041 -31127218 + RMER30 DNA MER1_type 2 202 0 8 1511 455 269 27 47 chr5 121410627 121410775 -31126484 + ID_B1 SINE B4 80 224 0 8 1511 221 274 0 12 chr5 121410779 121410864 -31126395 + GA-rich Low_complexity Low_complexity 6 89 0 8 1511 363 204 230 20 chr5 121411674 121411774 -31125485 + ID_B1 SINE B4 103 223 -1 8 1511 595 249 174 6 chr5 121412113 121412291 -31124968 - ID_B1 SINE B4 -9 215 8 8 1511 263 271 126 8 chr5 121413306 121413425 -31123834 - RSINE1 SINE B4 -29 136 4 8 1511 440 236 0 68 chr5 121414587 121414705 -31122554 + PB1D7 SINE Alu 1 110 -10 8 1511 256 160 0 57 chr5 121414908 121414961 -31122298 + B4 SINE B4 37 86 -206 8 1511 288 274 42 0 chr5 121414983 121415078 -31122181 + B4A SINE B4 82 180 -112 8 1511 340 238 25 0 chr5 121415102 121415182 -31122077 - ID4 SINE ID 0 83 2 8 1511 654 299 46 62 chr5 121415522 121415683 -31121576 - MTC-int LTR MaLR -939 319 172 8 1511 372 104 0 0 chr5 121415683 121415750 -31121509 + (TATG)n Simple_repeat Simple_repeat 4 70 0 8 1511 654 299 46 62 chr5 121415750 121415912 -31121347 - MTC-int LTR MaLR -1087 171 1 8 1511 1095 188 45 45 chr5 121415927 121416172 -31121087 - MTD LTR MaLR -174 245 1 8 1511 968 78 7 0 chr5 121416632 121416774 -31120485 - URR1B DNA MER1_type 0 225 83 8 1511 243 314 8 31 chr5 121417604 121417729 -31119530 - MIR SINE MIR -33 235 108 8 1511 449 302 24 35 chr5 121418177 121418362 -31118897 + MIR SINE MIR 13 196 -72 9 1511 671 270 48 29 chr5 121418511 121418721 -31118538 + MER20 DNA MER1_type 2 215 -4 9 1511 453 260 67 81 chr5 121418932 121419141 -31118118 - B4A SINE B4 -83 209 4 9 1511 681 47 0 0 chr5 121419152 121419237 -31118022 + (TTTC)n Simple_repeat Simple_repeat 3 87 0 9 1511 470 136 45 11 chr5 121419239 121419328 -31117931 - PB1D10 SINE Alu -13 104 13 9 1511 537 301 33 75 chr5 121420393 121420684 -31116575 + MLT1H1 LTR MaLR 216 552 -3 9 1511 553 282 14 14 chr5 121421160 121421304 -31115955 + RSINE1 SINE B4 2 145 -20 9 1511 184 118 29 0 chr5 121421329 121421363 -31115896 + MIRc SINE MIR 113 147 -121 9 1511 989 217 14 5 chr5 121421426 121421634 -31115625 + ID_B1 SINE B4 2 211 -13 9 1511 1211 46 23 0 chr5 121421655 121421830 -31115429 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 9 1511 201 147 0 0 chr5 121421836 121421870 -31115389 + L2b LINE L2 3324 3357 -18 9 1511 205 273 220 64 chr5 121422647 121422788 -31114471 - MIRb SINE MIR -12 256 94 9 1511 1138 195 18 0 chr5 121422905 121423126 -31114133 + URR1B DNA MER1_type 1 225 0 9 1511 659 12 0 12 chr5 121423200 121423281 -31113978 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 9 1511 330 346 0 0 chr5 121423827 121423934 -31113325 - ID_B1 SINE B4 -12 212 106 9 1511 748 238 69 5 chr5 121424104 121424307 -31112952 - ID_B1 SINE B4 -8 216 1 9 1511 484 315 96 60 chr5 121425514 121425846 -31111413 - MTE2b LTR MaLR -1 378 7 9 1511 374 162 29 0 chr5 121426569 121426637 -31110622 - ID_B1 SINE B4 -6 218 149 9 1511 739 36 9 8 chr5 121426635 121426742 -31110517 + B1_Mus2 SINE Alu 48 147 0 9 1511 449 220 136 0 chr5 121426763 121426881 -31110378 - ID_B1 SINE B4 -68 156 23 9 1511 223 250 0 62 chr5 121426831 121426895 -31110364 - BC1_Mm scRNA scRNA -81 71 12 9 1511 566 179 59 79 chr5 121428314 121428466 -31108793 - B1_Mur4 SINE Alu 0 150 2 9 1511 188 211 0 50 chr5 121428483 121428563 -31108696 + GA-rich Low_complexity Low_complexity 2 77 0 9 1511 207 0 0 0 chr5 121428673 121428696 -31108563 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 9 1511 537 264 71 35 chr5 121428713 121428882 -31108377 + B3 SINE B2 1 175 -41 9 1511 565 276 33 49 chr5 121430221 121430404 -31106855 + B3A SINE B2 19 198 0 9 1511 784 186 6 6 chr5 121430487 121430660 -31106599 + CT-rich Low_complexity Low_complexity 2 174 0 9 1511 398 250 20 0 chr5 121430681 121430781 -31106478 - PB1D9 SINE Alu -5 115 14 9 1511 774 228 43 6 chr5 121430971 121431134 -31106125 - ID_B1 SINE B4 -54 170 2 9 1511 333 0 0 0 chr5 121432033 121432070 -31105189 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1511 765 226 6 6 chr5 121432215 121432380 -31104879 - B3 SINE B2 -1 215 51 9 1511 472 200 28 9 chr5 121432481 121432587 -31104672 - ID_B1 SINE B4 -13 211 104 9 1511 1261 81 12 0 chr5 121432894 121433067 -31104192 + B2_Mm1t SINE B2 1 175 -18 9 1511 207 0 0 0 chr5 121433080 121433103 -31104156 + (CA)n Simple_repeat Simple_repeat 2 24 0 9 1511 547 282 36 26 chr5 121433108 121433301 -31103958 + B3 SINE B2 1 195 -21 9 1511 396 307 49 0 chr5 121433578 121433741 -31103518 - MER63D DNA AcHobo -837 224 54 9 1511 511 194 0 30 chr5 121433851 121433952 -31103307 + PB1D10 SINE Alu 18 115 -2 9 1511 961 65 181 13 chr5 121434614 121434769 -31102490 + B2_Mm2 SINE B2 1 181 -14 9 1511 1081 241 116 12 chr5 121434850 121435186 -31102073 - Lx9 LINE L1 -7 7637 7267 9 1511 1339 222 4 7 chr5 121435187 121435464 -31101795 + Lx9 LINE L1 7021 7296 -348 9 1511 1194 183 17 21 chr5 121435455 121435689 -31101570 + Lx9 LINE L1 6797 7029 -615 9 1511 239 348 0 42 chr5 121435884 121435980 -31101279 - MER102c DNA MER1_type -27 304 213 9 1511 624 279 136 16 chr5 121436005 121436263 -31100996 + B4A SINE B4 4 292 0 9 1511 396 0 0 0 chr5 121436291 121436335 -31100924 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1511 218 216 20 0 chr5 121438104 121438155 -31099104 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1511 727 254 93 0 chr5 121438194 121438387 -31098872 - B4A SINE B4 -80 212 2 9 1511 412 359 43 14 chr5 121438416 121438625 -31098634 + MLT1K LTR MaLR 54 268 -327 9 1511 446 49 0 16 chr5 121439110 121439172 -31098087 + (TG)n Simple_repeat Simple_repeat 2 62 0 9 1511 239 362 72 33 chr5 121439397 121439577 -31097682 + MIR SINE MIR 31 217 -51 9 1511 217 284 12 12 chr5 121439682 121439764 -31097495 + (TG)n Simple_repeat Simple_repeat 1 82 0 9 1511 318 299 27 27 chr5 121439892 121440002 -31097257 - B4A SINE B4 -180 112 3 9 1511 377 326 65 33 chr5 121440009 121440193 -31097066 - B4 SINE B4 -66 226 37 9 1511 310 302 87 74 chr5 121440940 121441169 -31096090 + LTR33 LTR ERVL 3 234 -281 9 1511 216 319 0 0 chr5 121441284 121441353 -31095906 + L3 LINE CR1 4330 4398 -91 9 1511 929 174 15 35 chr5 121442084 121442287 -31094972 + B3 SINE B2 5 203 -13 9 1511 240 267 0 0 chr5 121442287 121442418 -31094841 + (CA)n Simple_repeat Simple_repeat 1 131 0 9 1511 185 140 52 17 chr5 121442640 121442698 -31094561 + GA-rich Low_complexity Low_complexity 2 61 0 9 1511 265 143 0 0 chr5 121442941 121442983 -31094276 + B1_Mur2 SINE Alu 60 101 -48 9 1511 428 246 265 11 chr5 121442965 121443131 -31094128 - MER82 DNA MER2_type -232 421 208 9 1511 3392 20 0 2 chr5 121443131 121443528 -31093731 + MTA_Mm LTR MaLR 1 396 0 9 1511 428 246 265 11 chr5 121443528 121443550 -31093709 - MER82 DNA MER2_type -446 207 186 9 1511 968 239 14 0 chr5 121443568 121443781 -31093478 + B3 SINE B2 1 216 0 9 1511 21 0 0 0 chr5 121443949 121443970 -31093289 + AT_rich Low_complexity Low_complexity 1 21 0 9 1511 400 117 0 0 chr5 121444006 121444066 -31093193 - RSINE1 SINE B4 -35 130 71 9 1511 834 172 0 0 chr5 121444293 121444450 -31092809 + (TA)n Simple_repeat Simple_repeat 2 158 0 9 1511 1063 118 97 97 chr5 121444488 121444581 -31092678 - URR1A DNA MER1_type 0 226 147 9 1511 354 23 0 0 chr5 121444581 121444624 -31092635 + (TTGG)n Simple_repeat Simple_repeat 1 43 0 9 1511 992 103 7 0 chr5 121444624 121444764 -31092495 - B1_Mus1 SINE Alu 0 148 8 9 1511 1063 118 97 97 chr5 121444764 121444900 -31092359 - URR1A DNA MER1_type -80 146 1 9 1511 749 243 69 0 chr5 121446395 121446584 -31090675 + ID_B1 SINE B4 5 206 -18 9 1511 909 249 44 28 chr5 121447638 121447886 -31089373 + B4 SINE B4 41 292 0 9 1511 939 159 0 0 chr5 121447905 121448075 -31089184 + (CA)n Simple_repeat Simple_repeat 1 170 0 9 1511 185 0 40 0 chr5 121448446 121448471 -31088788 + (CCCCCA)n Simple_repeat Simple_repeat 4 29 0 9 1511 546 228 23 40 chr5 121448785 121448959 -31088300 - HAL1-2a_MD LINE L1 -509 2515 2345 9 1511 185 231 0 0 chr5 121449051 121449090 -31088169 - MIR SINE MIR -115 147 109 9 1511 235 210 0 46 chr5 121449648 121449713 -31087546 - MIR SINE MIR -95 167 106 9 1511 404 143 41 0 chr5 121450368 121450466 -31086793 + CT-rich Low_complexity Low_complexity 2 103 0 9 1511 272 322 34 11 chr5 121450549 121450637 -31086622 + ORR1E LTR MaLR 269 358 -1 9 1511 373 307 74 53 chr5 121450684 121450873 -31086386 - MIRb SINE MIR -66 202 10 9 1511 198 0 0 0 chr5 121451059 121451081 -31086178 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1511 385 291 44 26 chr5 121451455 121451568 -31085691 + ID_B1 SINE B4 104 218 -6 9 1511 1520 189 200 27 chr5 121451761 121452207 -31085052 + MT2A LTR ERVL 1 523 -10 9 1511 501 17 0 0 chr5 121452208 121452266 -31084993 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 1511 277 295 34 11 chr5 121452980 121453069 -31084190 + MER5A DNA MER1_type 1 91 -98 9 1511 182 132 53 0 chr5 121453648 121453686 -31083573 + (CAGG)n Simple_repeat Simple_repeat 3 42 0 9 1511 240 35 0 0 chr5 121455346 121455375 -31081884 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 9 1511 237 171 28 22 chr5 121455657 121455728 -31081531 - MIRb SINE MIR -14 194 113 9 1511 278 227 13 51 chr5 121456114 121456193 -31081066 - MIRc SINE MIR -110 158 83 9 1511 498 17 0 0 chr5 121456272 121456331 -31080928 + (TCC)n Simple_repeat Simple_repeat 1 59 0 9 1511 202 288 49 18 chr5 121456912 121457021 -31080238 + MIR SINE MIR 12 125 -143 9 1511 280 225 50 0 chr5 121457113 121457193 -31080066 - MIR3 SINE MIR -24 184 101 9 1511 180 152 0 0 chr5 121459210 121459243 -31078016 + A-rich Low_complexity Low_complexity 1 33 0 9 1511 188 182 23 0 chr5 121459335 121459379 -31077880 + CT-rich Low_complexity Low_complexity 2 46 0 9 1511 201 143 48 0 chr5 121459919 121459961 -31077298 + A-rich Low_complexity Low_complexity 4 47 0 9 1511 402 308 22 34 chr5 121460702 121460880 -31076379 - HAL1-2a_MD LINE L1 -504 2520 2345 9 1511 440 319 115 24 chr5 121460929 121461138 -31076121 - MIR SINE MIR -13 249 22 9 1511 189 0 0 0 chr5 121461205 121461226 -31076033 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1511 1143 68 0 0 chr5 121461226 121461374 -31075885 - B1_Mus1 SINE Alu 0 148 1 9 1511 786 172 4 0 chr5 121462564 121462823 -31074436 + (TG)n Simple_repeat Simple_repeat 1 260 0 9 1511 538 256 106 15 chr5 121462902 121463100 -31074159 + B3 SINE B2 1 216 0 9 1511 1208 218 83 34 chr5 121463114 121463441 -31073818 - MTD LTR MaLR -45 374 32 9 1511 362 262 176 61 chr5 121463496 121463758 -31073501 - B4A SINE B4 0 292 1 9 1511 249 304 25 0 chr5 121463841 121463920 -31073339 + MLT1D LTR MaLR 408 488 -17 9 1511 302 317 81 77 chr5 121464423 121464683 -31072576 + MIRc SINE MIR 3 263 -5 9 1511 280 328 129 8 chr5 121464800 121464932 -31072327 + MIR SINE MIR 13 160 -102 1 1511 977 233 0 5 chr5 121465708 121465919 -31071340 - B3 SINE B2 -5 211 2 1 1511 695 44 11 0 chr5 121465971 121466062 -31071197 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1511 515 296 113 12 chr5 121466065 121466321 -31070938 - B4A SINE B4 -6 286 5 1 1511 279 234 90 0 chr5 121466927 121467005 -31070254 + L1M5 LINE L1 5678 5762 -362 1 1511 560 241 34 14 chr5 121467164 121467311 -31069948 - B4A SINE B4 -129 163 14 1 1511 301 317 0 82 chr5 121467455 121467613 -31069646 - MLT1B LTR MaLR -187 203 59 1 1511 207 0 0 0 chr5 121467931 121467954 -31069305 + (CCTG)n Simple_repeat Simple_repeat 4 26 0 1 1511 253 264 79 35 chr5 121467974 121468088 -31069171 + LTR16B2 LTR ERVL 190 308 -154 1 1511 573 306 28 88 chr5 121468386 121468477 -31068782 + ID SINE ID 3 80 -144 1 1511 326 275 51 127 chr5 121468477 121468635 -31068624 + B1_Mus2 SINE Alu 1 146 -1 1 1511 350 299 0 0 chr5 121468704 121468791 -31068468 - B1_Mur2 SINE Alu -55 94 8 1 1511 284 309 223 6 chr5 121468789 121468955 -31068304 + MLT1K LTR MaLR 281 482 -113 1 1511 1131 86 17 0 chr5 121468955 121469129 -31068130 + (TTC)n Simple_repeat Simple_repeat 3 179 0 1 1511 875 152 11 11 chr5 121469142 121469322 -31067937 + CT-rich Low_complexity Low_complexity 1 180 0 1 1511 425 260 135 52 chr5 121470689 121470977 -31066282 + MLT1H LTR MaLR 38 349 -200 1 1511 23 0 0 0 chr5 121471010 121471033 -31066226 + AT_rich Low_complexity Low_complexity 1 23 0 1 1511 1170 165 5 10 chr5 121471037 121471245 -31066014 - URR1A DNA MER1_type -19 207 1 1 1511 484 275 112 7 chr5 121471521 121471664 -31065595 + RSINE1 SINE B4 2 159 -6 1 1511 1632 5 0 0 chr5 121471791 121471975 -31065284 - B2_Mm1a SINE B2 -8 185 2 1 1511 258 243 35 56 chr5 121472202 121472346 -31064913 - L1MDa LINE L1 -4052 2581 2441 1 1511 488 241 9 0 chr5 121472601 121472709 -31064550 - PB1D10 SINE Alu 0 117 9 1 1511 233 284 90 11 chr5 121472631 121472720 -31064539 - B4 SINE B4 -114 178 83 1 1511 656 294 20 66 chr5 121473106 121473350 -31063909 + B4A SINE B4 60 292 0 1 1511 271 258 53 11 chr5 121473363 121473457 -31063802 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 1511 437 0 19 0 chr5 121473640 121473693 -31063566 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1511 254 301 182 28 chr5 121473971 121474152 -31063107 + RLTR24 LTR ERV1 321 529 0 1 1511 440 68 0 7 chr5 121474897 121474969 -31062290 + B1_Mur4 SINE Alu 60 150 0 1 1511 1120 82 0 0 chr5 121474985 121475132 -31062127 + B1_Mus2 SINE Alu 1 147 0 1 1511 329 58 19 0 chr5 121475132 121475184 -31062075 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 1 1511 24 0 0 0 chr5 121475197 121475221 -31062038 + AT_rich Low_complexity Low_complexity 1 24 0 1 1511 362 289 58 0 chr5 121475304 121475408 -31061851 - PB1D7 SINE Alu 0 120 11 1 1511 242 320 10 30 chr5 121475322 121475422 -31061837 - ID_B1 SINE B4 -48 176 79 1 1511 1127 84 5 61 chr5 121475797 121476011 -31061248 + Lx LINE L1 6436 6637 -17 1 1511 276 299 180 73 chr5 121476372 121476700 -31060559 - ORR1E LTR MaLR 0 370 8 1 1511 1382 139 115 45 chr5 121476708 121476759 -31060500 + Lx LINE L1 6300 6347 -307 1 1511 257 0 0 29 chr5 121476759 121476793 -31060466 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1511 306 0 0 0 chr5 121476793 121476826 -31060433 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1511 1382 139 115 45 chr5 121476826 121476983 -31060276 + Lx LINE L1 6348 6516 -138 1 1511 180 0 0 0 chr5 121476983 121477003 -31060256 + (TGGG)n Simple_repeat Simple_repeat 2 21 0 1 1511 1382 139 115 45 chr5 121477003 121477123 -31060136 + Lx LINE L1 6517 6650 -4 1 1511 288 0 0 0 chr5 121477126 121477158 -31060101 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1511 963 286 41 7 chr5 121477396 121477667 -31059592 + B4A SINE B4 7 286 -6 1 1511 765 236 90 49 chr5 121478279 121478546 -31058713 + B4A SINE B4 2 279 -13 1 1511 350 330 0 0 chr5 121478562 121478659 -31058600 + (CA)n Simple_repeat Simple_repeat 2 98 0 1 1511 825 279 39 28 chr5 121479393 121479677 -31057582 + B4 SINE B4 5 291 -1 1 1511 214 359 41 21 chr5 121479948 121480093 -31057166 - MIRb SINE MIR -8 260 113 1 1511 210 71 0 0 chr5 121480430 121480458 -31056801 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 1 1511 554 267 27 0 chr5 121481040 121481190 -31056069 - B4A SINE B4 -23 269 116 1 1511 228 203 169 28 chr5 121481625 121481696 -31055563 + PB1D7 SINE Alu 40 120 0 1 1511 248 28 0 53 chr5 121481950 121481988 -31055271 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1511 835 162 20 7 chr5 121481988 121482137 -31055122 + B3A SINE B2 1 151 -47 1 1511 423 0 0 0 chr5 121482139 121482186 -31055073 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1511 871 191 23 11 chr5 121482744 121482919 -31054340 + B2_Mm2 SINE B2 1 177 -18 1 1511 423 283 10 0 chr5 121482953 121483052 -31054207 + B4A SINE B4 2 101 -191 1 1511 676 140 4 35 chr5 121483054 121483284 -31053975 + (TG)n Simple_repeat Simple_repeat 1 222 0 1 1511 751 107 48 8 chr5 121483321 121483705 -31053554 + (TG)n Simple_repeat Simple_repeat 1 399 0 1 1511 532 284 99 0 chr5 121483706 121483868 -31053391 + B4A SINE B4 109 286 -6 1 1511 727 160 11 17 chr5 121483880 121484058 -31053201 + (CA)n Simple_repeat Simple_repeat 2 178 0 1 1511 708 210 28 7 chr5 121484128 121484272 -31052987 + B1_Mur1 SINE Alu 2 148 -1 1 1511 259 226 156 31 chr5 121485143 121485239 -31052020 - PB1D10 SINE Alu 0 117 10 1 1511 855 117 5 32 chr5 121485463 121485614 -31051645 + (TG)n Simple_repeat Simple_repeat 1 146 0 1 1511 2627 28 28 0 chr5 121485614 121485932 -31051327 - IAPLTR2b LTR ERVK 0 327 1 1 1511 855 162 22 20 chr5 121485932 121486437 -31050822 + (TG)n Simple_repeat Simple_repeat 1 506 0 1 1511 954 198 77 0 chr5 121486451 121486658 -31050601 - ID_B1 SINE B4 0 224 2 1 1511 255 140 0 0 chr5 121487368 121487418 -31049841 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 1 1511 661 280 101 70 chr5 121487725 121487982 -31049277 - B4A SINE B4 -26 266 2 1 1511 456 240 5 32 chr5 121488019 121488204 -31049055 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 1 1511 546 199 17 28 chr5 121488231 121488407 -31048852 + (CATATA)n Simple_repeat Simple_repeat 4 177 0 1 1511 366 23 0 0 chr5 121488427 121488470 -31048789 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1511 198 293 151 43 chr5 121488583 121488722 -31048537 + MER5B DNA MER1_type 25 178 0 1 1511 413 338 103 4 chr5 121489423 121489655 -31047604 + Lx8 LINE L1 6964 7218 -255 1 1511 839 245 98 72 chr5 121490320 121490584 -31046675 - B4A SINE B4 -21 271 1 1 1511 456 216 9 29 chr5 121490644 121490749 -31046510 + MIRm SINE MIR 42 144 -132 1 1511 353 257 50 0 chr5 121490753 121490854 -31046405 + B2_Mm1t SINE B2 2 107 -86 1 1511 620 168 113 0 chr5 121490930 121491078 -31046181 + ORR1D1 LTR MaLR 214 394 0 1 1511 272 394 15 8 chr5 121491734 121491867 -31045392 + LTR85c LTR Gypsy? 685 818 -5 1 1511 181 315 0 0 chr5 121492487 121492541 -31044718 - MIRc SINE MIR -114 154 101 1 1511 376 173 17 45 chr5 121492594 121492698 -31044561 + PB1D10 SINE Alu 14 117 -3 1 1511 324 335 55 77 chr5 121492699 121492880 -31044379 - LTR33A_ LTR ERVL -16 515 339 1 1511 222 280 13 39 chr5 121492882 121492960 -31044299 + GA-rich Low_complexity Low_complexity 3 78 0 1 1511 505 183 17 45 chr5 121492978 121493155 -31044104 + G-rich Low_complexity Low_complexity 2 173 0 1 1511 461 220 29 65 chr5 121493158 121493328 -31043931 + GA-rich Low_complexity Low_complexity 2 165 0 1 1511 182 244 0 43 chr5 121493603 121493650 -31043609 - MIRb SINE MIR -179 89 45 1 1511 243 271 2 0 chr5 121493812 121493871 -31043388 + MIRc SINE MIR 96 155 -53 1 1511 597 56 81 10 chr5 121494096 121494298 -31042961 + (CA)n Simple_repeat Simple_repeat 1 216 0 1 1511 230 135 58 0 chr5 121495684 121495736 -31041523 + CT-rich Low_complexity Low_complexity 1 55 0 1 1511 366 287 34 118 chr5 121496230 121496408 -31040851 + RSINE1 SINE B4 3 165 0 1 1511 1135 62 0 0 chr5 121496516 121496660 -31040599 - B1_Mus1 SINE Alu 0 148 5 1 1511 410 0 20 0 chr5 121496840 121496890 -31040369 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 1 1511 366 257 118 10 chr5 121496890 121496985 -31040274 - PB1D9 SINE Alu -13 107 1 1 1511 678 121 0 0 chr5 121497069 121497185 -31040074 + (TA)n Simple_repeat Simple_repeat 2 117 0 1 1511 495 293 101 73 chr5 121497189 121497436 -31039823 - MLT1J LTR MaLR -12 500 247 1 1511 459 0 0 0 chr5 121498018 121498069 -31039190 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1511 748 169 7 7 chr5 121498069 121498224 -31039035 + (TG)n Simple_repeat Simple_repeat 1 155 0 1 1511 909 236 18 45 chr5 121498339 121498561 -31038698 - B3 SINE B2 0 216 1 1 1511 982 214 9 24 chr5 121498561 121498768 -31038491 - B4A SINE B4 -65 227 24 1 1511 608 281 62 0 chr5 121498914 121499060 -31038199 + B3A SINE B2 2 156 -42 1 1511 432 0 0 0 chr5 121499061 121499109 -31038150 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1511 420 228 226 8 chr5 121499875 121499999 -31037260 + B4A SINE B4 103 253 -39 1 1511 669 25 0 0 chr5 121500511 121500590 -31036669 + (GA)n Simple_repeat Simple_repeat 1 79 0 1 1511 420 253 2 25 chr5 121501458 121501574 -31035685 - PB1D10 SINE Alu -13 134 27 2 1511 267 340 0 0 chr5 121501795 121501892 -31035367 - L2a LINE L2 -305 3121 3025 3 1511 653 252 66 0 chr5 121502154 121502305 -31034954 + RSINE1 SINE B4 3 163 -2 4 1511 534 108 0 0 chr5 121502318 121502401 -31034858 + (GGGA)n Simple_repeat Simple_repeat 2 84 0 5 1511 2946 108 91 26 chr5 121502434 121502928 -31034331 - RLTR11A LTR ERVK -2 526 1 6 1511 324 258 150 0 chr5 121502972 121503092 -31034167 - MER117 DNA MER1_type -19 178 41 7 1511 424 249 153 17 chr5 121503426 121503602 -31033657 + RMER15 LTR ERVL 374 573 -2 8 188 712 172 82 0 chr5 121503637 121503759 -31033500 + B1_Mur4 SINE Alu 10 141 -9 9 1512 293 259 83 89 chr5 121503759 121503786 -31033473 + MT2B2 LTR ERVL 199 323 -261 1 1512 785 237 97 90 chr5 121504451 121504729 -31032530 - B4A SINE B4 -8 284 5 1 1512 243 0 0 0 chr5 121504779 121504806 -31032453 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1512 604 263 155 5 chr5 121505078 121505265 -31031994 + B3 SINE B2 2 216 0 1 1512 702 241 0 0 chr5 121505304 121505558 -31031701 + (TG)n Simple_repeat Simple_repeat 1 254 0 1 1512 488 207 108 0 chr5 121506141 121506252 -31031007 - B1F SINE Alu 0 149 27 1 1512 496 315 31 0 chr5 121506278 121506408 -31030851 - RSINE1 SINE B4 -29 136 3 1 1512 447 228 33 0 chr5 121506421 121506513 -31030746 - PB1D10 SINE Alu -10 107 13 1 1512 303 49 0 0 chr5 121506515 121506556 -31030703 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1512 217 222 95 0 chr5 121506688 121506751 -31030508 + MIR SINE MIR 113 181 -81 1 1512 248 301 27 0 chr5 121506842 121506915 -31030344 + MIRm SINE MIR 182 256 -20 2 1512 397 318 53 0 chr5 121507405 121507537 -31029722 + MIRb SINE MIR 14 152 -116 2 1512 474 315 49 40 chr5 121508451 121508676 -31028583 - ORR1E LTR MaLR -122 237 11 2 1512 1397 191 132 66 chr5 121508805 121509198 -31028061 - MTD LTR MaLR 0 419 1 2 1512 700 127 109 22 chr5 121509740 121509877 -31027382 + B1_Mur4 SINE Alu 1 149 -1 2 1512 232 368 0 0 chr5 121510444 121510512 -31026747 - LTR16C LTR ERVL -259 230 163 2 1512 446 245 7 0 chr5 121510737 121510768 -31026491 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 2 1512 1002 152 0 0 chr5 121510768 121510945 -31026314 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 2 1512 446 245 7 0 chr5 121510945 121511017 -31026242 + (TGGA)n Simple_repeat Simple_repeat 3 74 0 2 1512 276 53 0 0 chr5 121511017 121511055 -31026204 + (CATG)n Simple_repeat Simple_repeat 2 39 0 2 1512 960 177 1 0 chr5 121511055 121511280 -31025979 + (TGGA)n Simple_repeat Simple_repeat 1 225 0 3 1512 954 198 54 36 chr5 121511573 121511648 -31025611 - ORR1D1 LTR MaLR -164 210 171 3 1512 504 0 0 0 chr5 121511648 121511704 -31025555 + (GA)n Simple_repeat Simple_repeat 1 56 0 3 1512 954 164 73 53 chr5 121511704 121511858 -31025401 - ORR1D1 LTR MaLR -204 170 2 3 1512 520 328 38 32 chr5 121511858 121512040 -31025219 + MLT1J LTR MaLR 86 268 -244 3 1512 1022 185 54 15 chr5 121512099 121512302 -31024957 + B3 SINE B2 3 213 -3 3 1512 798 41 0 0 chr5 121513562 121513660 -31023599 + (CA)n Simple_repeat Simple_repeat 1 98 0 3 1512 306 0 0 0 chr5 121513734 121513768 -31023491 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1512 385 337 178 13 chr5 121513810 121514114 -31023145 - L1M4 LINE L1 -1791 4355 4002 3 1512 347 323 12 83 chr5 121514857 121515026 -31022233 - LTR90B LTR LTR -484 312 156 3 1512 243 0 0 0 chr5 121515058 121515085 -31022174 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1512 517 257 43 0 chr5 121515357 121515497 -31021762 + B1F SINE Alu 3 148 -1 4 1512 243 227 10 20 chr5 121515499 121515598 -31021661 + GA-rich Low_complexity Low_complexity 2 99 0 4 1512 239 229 100 0 chr5 121515599 121515669 -31021590 + L1M2 LINE L1 4911 4987 -1156 4 1512 511 338 32 0 chr5 121515728 121516012 -31021247 + L1M2 LINE L1 5086 5378 -765 4 1512 450 0 0 0 chr5 121516096 121516146 -31021113 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1512 535 235 133 3 chr5 121516178 121516307 -31020952 + B3A SINE B2 10 166 -32 4 1512 396 0 0 0 chr5 121516309 121516353 -31020906 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1512 202 321 0 0 chr5 121516380 121516433 -31020826 + GA-rich Low_complexity Low_complexity 4 56 0 4 1512 642 248 36 35 chr5 121516700 121516858 -31020401 + ID_B1 SINE B4 70 224 0 4 1512 306 106 0 0 chr5 121517481 121517528 -31019731 + (TA)n Simple_repeat Simple_repeat 2 48 0 4 1512 319 66 32 32 chr5 121517608 121517671 -31019588 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 4 1512 465 264 108 0 chr5 121518120 121518268 -31018991 - RSINE1 SINE B4 0 165 2 5 1512 240 274 27 14 chr5 121518269 121518343 -31018916 - MIRc SINE MIR -123 145 71 5 1512 2355 64 0 153 chr5 121519916 121520302 -31016957 - ORR1A2 LTR MaLR 0 327 1 5 1512 595 242 126 20 chr5 121520558 121520756 -31016503 + ID_B1 SINE B4 1 219 -5 5 1512 251 311 165 16 chr5 121520917 121521038 -31016221 + MIR SINE MIR 42 180 -82 5 1512 1158 268 87 32 chr5 121521048 121521395 -31015864 - MTE2a LTR MaLR 0 379 14 5 1512 306 0 0 0 chr5 121521439 121521473 -31015786 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1512 565 277 101 62 chr5 121521560 121521704 -31015555 - B4 SINE B4 -4 288 140 5 1512 1160 52 0 0 chr5 121521704 121521838 -31015421 - B1_Mm SINE Alu -12 135 2 5 1512 565 277 101 62 chr5 121521838 121521890 -31015369 - B4 SINE B4 -153 139 84 5 1512 282 87 0 0 chr5 121521890 121521936 -31015323 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 5 1512 1349 38 0 0 chr5 121521946 121522095 -31015164 - B2_Mm1t SINE B2 -33 160 2 6 1512 470 222 0 62 chr5 121522095 121522189 -31015070 - B4A SINE B4 -197 95 8 5 1512 810 237 152 27 chr5 121522205 121522461 -31014798 - MTD LTR MaLR -109 310 23 6 1512 3149 47 42 0 chr5 121523561 121523941 -31013318 - MTA_Mm LTR MaLR 0 396 1 6 1512 8449 38 21 9 chr5 121523941 121524675 -31012584 - MTA_Mm-int LTR MaLR 0 1098 351 6 1512 1680 125 30 63 chr5 121524675 121525008 -31012251 + RLTRETN_Mm LTR ERVK 1 322 0 6 1512 8449 38 21 9 chr5 121525008 121525358 -31011901 - MTA_Mm-int LTR MaLR -748 350 1 6 1512 389 41 0 0 chr5 121525366 121525415 -31011844 - MTD LTR MaLR -347 49 1 6 1512 300 70 0 0 chr5 121525460 121525503 -31011756 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1512 433 276 179 76 chr5 121526079 121526342 -31010917 + B4A SINE B4 3 292 0 6 1512 1070 166 154 10 chr5 121527231 121527426 -31009833 - URR1B DNA MER1_type 0 225 3 6 1512 800 294 18 5 chr5 121527716 121527935 -31009324 + ID_B1 SINE B4 1 222 -2 6 1512 266 294 97 10 chr5 121528068 121528171 -31009088 - MIRc SINE MIR -118 150 39 6 1512 290 236 14 27 chr5 121528213 121528287 -31008972 - PB1D10 SINE Alu -5 112 40 6 1512 312 342 70 26 chr5 121528399 121528555 -31008704 - LTR16E1 LTR ERVL -17 521 359 7 1512 456 164 24 16 chr5 121529069 121529193 -31008066 + (TAGA)n Simple_repeat Simple_repeat 3 127 0 7 1512 365 311 81 25 chr5 121529272 121529470 -31007789 + L1MC4 LINE L1 7470 7678 -364 7 1512 345 340 81 48 chr5 121530119 121530703 -31006556 + L2a LINE L2 2561 3238 -188 7 1512 1055 201 75 5 chr5 121530742 121530942 -31006317 + B3 SINE B2 2 215 -1 7 1512 554 325 68 6 chr5 121531022 121531183 -31006076 - B4A SINE B4 -29 263 93 7 1512 663 344 87 23 chr5 121531167 121531512 -31005747 + MLT1G1 LTR MaLR 173 539 -40 7 1512 880 211 20 20 chr5 121531884 121532082 -31005177 - B3A SINE B2 0 198 1 7 1512 311 272 61 61 chr5 121532148 121532246 -31005013 - RSINE1 SINE B4 -23 142 45 7 1512 267 31 0 0 chr5 121532315 121532347 -31004912 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 7 1512 520 254 119 0 chr5 121532453 121532579 -31004680 + B1_Mur2 SINE Alu 1 141 -8 8 1512 704 261 147 39 chr5 121533368 121533672 -31003587 - ORR1E LTR MaLR -4 375 20 8 1512 1284 235 32 47 chr5 121533662 121534041 -31003218 + MTE2a LTR MaLR 36 405 -14 8 1512 198 71 0 0 chr5 121534180 121534208 -31003051 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1512 286 58 0 55 chr5 121534211 121534266 -31002993 + (CAGA)n Simple_repeat Simple_repeat 4 55 0 8 1512 1166 258 7 52 chr5 121534273 121534563 -31002696 - B4 SINE B4 -13 279 3 8 1512 1387 99 16 0 chr5 121534609 121534801 -31002458 - B2_Mm2 SINE B2 0 195 1 8 1512 640 287 41 23 chr5 121535124 121535295 -31001964 - B4A SINE B4 -114 178 5 8 1512 258 32 0 0 chr5 121535852 121535883 -31001376 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1512 1209 49 7 0 chr5 121535885 121536029 -31001230 - B1_Mm SINE Alu -1 146 2 8 1512 1255 55 104 0 chr5 121536093 121536257 -31001002 + B2_Mm2 SINE B2 1 181 -14 9 1512 1897 139 140 17 chr5 121536802 121537152 -31000107 - MTC LTR MaLR -28 393 1 9 1512 666 189 0 9 chr5 121537168 121537280 -30999979 - PB1D9 SINE Alu 0 120 10 9 1512 405 227 210 40 chr5 121537169 121537293 -30999966 - ID_B1 SINE B4 0 224 80 9 1512 1197 90 0 0 chr5 121537337 121537514 -30999745 + (TG)n Simple_repeat Simple_repeat 2 178 0 9 1512 483 33 0 0 chr5 121537629 121537690 -30999569 + (CA)n Simple_repeat Simple_repeat 1 61 0 9 1512 453 274 123 0 chr5 121537710 121537816 -30999443 + ID_B1 SINE B4 1 119 -105 9 1512 724 322 52 45 chr5 121538324 121538613 -30998646 - B4A SINE B4 0 292 2 9 1512 401 228 101 95 chr5 121538727 121538804 -30998455 + MT2B2 LTR ERVL 78 155 -429 9 1512 1041 110 7 0 chr5 121538804 121538949 -30998310 + B1_Mus1 SINE Alu 2 147 -1 9 1512 309 277 207 13 chr5 121539011 121539127 -30998132 + MIRm SINE MIR 2 128 -148 1 1512 380 322 27 14 chr5 121539463 121539611 -30997648 - MIRm SINE MIR -88 188 39 1 1512 274 286 26 0 chr5 121540259 121540336 -30996923 + ID_B1 SINE B4 70 148 -76 1 1512 335 144 5 5 chr5 121540288 121540353 -30996906 + PB1D7 SINE Alu 20 84 -43 1 1512 840 301 44 83 chr5 121540358 121540802 -30996457 + MTD LTR MaLR 1 421 0 1 1512 410 203 81 0 chr5 121540806 121540880 -30996379 + ID_B1 SINE B4 137 216 -8 1 1512 294 233 40 40 chr5 121540813 121540889 -30996370 + B1F SINE Alu 73 148 -1 1 1512 303 237 50 20 chr5 121541088 121541187 -30996072 - MIRc SINE MIR -102 166 65 1 1512 251 261 156 22 chr5 121541404 121541494 -30995765 - MTEb LTR MaLR 0 379 278 1 1512 1615 209 24 14 chr5 121541572 121541889 -30995370 - MTEb LTR MaLR -74 305 1 1 1512 408 299 86 5 chr5 121541895 121542093 -30995166 - MLT1D LTR MaLR -289 216 3 1 1512 369 0 0 0 chr5 121542130 121542171 -30995088 + (TCTG)n Simple_repeat Simple_repeat 1 41 0 1 1512 236 314 23 0 chr5 121542355 121542441 -30994818 + MIR SINE MIR 127 214 -48 1 1512 558 308 6 55 chr5 121542699 121542864 -30994395 + RSINE1 SINE B4 9 165 0 1 1512 276 211 0 0 chr5 121542867 121542924 -30994335 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 1 1512 730 153 17 0 chr5 121542924 121543100 -30994159 + (CATA)n Simple_repeat Simple_repeat 2 180 0 1 1512 615 130 0 0 chr5 121543630 121543722 -30993537 + B1_Mur4 SINE Alu 59 150 0 1 1512 491 279 3 131 chr5 121543725 121543935 -30993324 - B3 SINE B2 -14 181 1 1 1512 1350 105 5 0 chr5 121544113 121544304 -30992955 - B2_Mm2 SINE B2 -2 193 2 1 1512 260 264 14 0 chr5 121544737 121544809 -30992450 + B4 SINE B4 3 75 -217 1 1512 31 26 0 0 chr5 121544815 121544853 -30992406 + AT_rich Low_complexity Low_complexity 1 38 0 1 1512 1018 134 35 74 chr5 121544853 121545055 -30992204 + B2_Mm2 SINE B2 2 195 0 1 1512 596 280 20 0 chr5 121545060 121545210 -30992049 + B4 SINE B4 80 232 -60 1 1512 232 225 104 104 chr5 121545284 121545436 -30991823 + RMER15 LTR ERVL 309 460 -115 1 1512 226 241 152 17 chr5 121545436 121545495 -30991764 + B3 SINE B2 1 67 -149 1 1512 222 37 0 0 chr5 121545497 121545524 -30991735 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 1512 1204 75 0 0 chr5 121545568 121545715 -30991544 - B1_Mus1 SINE Alu 0 148 2 1 1512 497 273 27 48 chr5 121545715 121545861 -30991398 + B3A SINE B2 55 197 -1 1 1512 256 254 76 42 chr5 121546816 121546888 -30990371 + Charlie5 DNA MER1_type 2309 2383 -241 1 1512 1031 254 82 52 chr5 121546888 121547254 -30990005 - MTE2a LTR MaLR 0 379 3 1 1512 256 254 76 42 chr5 121547254 121547300 -30989959 + Charlie5 DNA MER1_type 2384 2431 -193 1 1512 381 280 76 0 chr5 121547306 121547424 -30989835 + B1F SINE Alu 2 128 -21 1 1512 272 203 47 0 chr5 121547433 121547497 -30989762 + GA-rich Low_complexity Low_complexity 3 69 0 1 1512 405 0 0 0 chr5 121547769 121547814 -30989445 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1512 348 297 0 0 chr5 121547962 121548036 -30989223 - RSINE1 SINE B4 -89 76 3 1 1512 2640 158 9 14 chr5 121548576 121548999 -30988260 + MTC LTR MaLR 1 421 0 1 1512 203 138 0 0 chr5 121549484 121549513 -30987746 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 1 1512 519 206 10 0 chr5 121549516 121549618 -30987641 + B1_Mus1 SINE Alu 2 104 -44 1 1512 315 214 26 88 chr5 121549517 121549630 -30987629 + MT2B LTR ERVL 167 272 -329 1 1512 347 179 0 0 chr5 121550279 121550335 -30986924 + B3A SINE B2 3 58 -140 1 1512 843 277 26 9 chr5 121550342 121550568 -30986691 - B4 SINE B4 -60 232 3 1 1512 903 214 5 39 chr5 121550766 121550970 -30986289 - B3A SINE B2 -1 197 1 1 1512 274 286 12 12 chr5 121551626 121551711 -30985548 + (TTG)n Simple_repeat Simple_repeat 3 87 0 1 1512 598 301 0 33 chr5 121551711 121551862 -30985397 - RSINE1 SINE B4 -14 151 6 1 1512 678 35 0 0 chr5 121551894 121551979 -30985280 + (GTTTG)n Simple_repeat Simple_repeat 1 85 0 1 1512 628 234 46 74 chr5 121551979 121552196 -30985063 - ID_B1 SINE B4 -13 211 1 1 1512 826 181 0 34 chr5 121552276 121552417 -30984842 + B1_Mur3 SINE Alu 1 136 -13 1 1512 294 50 0 0 chr5 121552417 121552457 -30984802 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1512 1075 236 53 11 chr5 121552677 121552939 -30984320 + B4 SINE B4 2 274 -18 1 1512 423 0 0 0 chr5 121552949 121552996 -30984263 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1512 206 32 32 0 chr5 121553572 121553603 -30983656 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 1 1512 393 58 0 0 chr5 121553968 121554020 -30983239 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1512 1119 235 50 4 chr5 121554030 121554291 -30982968 - B4 SINE B4 -18 274 2 1 1512 375 41 0 0 chr5 121554509 121554558 -30982701 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1512 755 193 0 36 chr5 121554558 121554698 -30982561 - B1_Mur3 SINE Alu -14 135 1 1 1512 295 216 65 54 chr5 121554778 121554871 -30982388 + ID_B1 SINE B4 1 94 -130 1 1512 747 279 18 9 chr5 121555215 121555432 -30981827 + ID_B1 SINE B4 2 220 -4 1 1512 372 275 84 108 chr5 121555456 121555623 -30981636 + RSINE1 SINE B4 3 165 0 1 1512 235 214 0 0 chr5 121555627 121555669 -30981590 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1512 1344 80 0 6 chr5 121555683 121555859 -30981400 - B2_Mm2 SINE B2 -20 175 1 1 1512 474 18 0 0 chr5 121556931 121556986 -30980273 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1512 1897 152 15 38 chr5 121556994 121557335 -30979924 + RLTR14 LTR ERV1 1 333 -49 1 1512 437 119 0 0 chr5 121557345 121557412 -30979847 + B1_Mur4 SINE Alu 84 150 0 1 1512 320 155 0 49 chr5 121557418 121557479 -30979780 + RLTR14 LTR ERV1 317 374 -8 1 1512 518 182 0 9 chr5 121557488 121557599 -30979660 + CT-rich Low_complexity Low_complexity 3 112 0 1 1512 3282 30 5 0 chr5 121557709 121558103 -30979156 - MTA_Mm LTR MaLR 0 396 1 1 1512 423 146 243 0 chr5 121558148 121558251 -30979008 + B4A SINE B4 120 247 -45 1 1512 376 365 20 25 chr5 121558346 121558548 -30978711 - Tigger5 DNA MER2_type -2166 240 40 1 1512 211 238 11 111 chr5 121558563 121558653 -30978606 + ID_B1 SINE B4 69 149 -75 1 1512 217 301 153 24 chr5 121558592 121558677 -30978582 + PB1D10 SINE Alu 12 107 -10 1 1512 3323 34 7 2 chr5 121558698 121559112 -30978147 - L1Md_F2 LINE L1 -2 6580 6165 1 1512 253 188 0 0 chr5 121559853 121559901 -30977358 + ID SINE ID 15 62 -162 1 1512 987 45 0 43 chr5 121559903 121560042 -30977217 + B2_Mm2 SINE B2 3 135 -60 1 1512 667 122 40 23 chr5 121560061 121560237 -30977022 + GA-rich Low_complexity Low_complexity 2 180 0 1 1512 204 121 0 29 chr5 121560237 121560271 -30976988 + G-rich Low_complexity Low_complexity 6 38 0 1 1512 469 268 32 32 chr5 121560271 121560303 -30976956 + ID_B1 SINE B4 51 142 -82 1 1512 287 283 59 92 chr5 121560303 121560364 -30976895 + B1F SINE Alu 3 66 -83 1 1512 1396 58 11 0 chr5 121560364 121560553 -30976706 + B2_Mm1t SINE B2 2 192 -1 1 1512 469 268 32 32 chr5 121560553 121560613 -30976646 + ID_B1 SINE B4 143 203 -21 1 1512 287 283 59 92 chr5 121560613 121560643 -30976616 + B1F SINE Alu 67 149 0 1 1512 210 164 36 18 chr5 121560671 121560727 -30976532 + T-rich Low_complexity Low_complexity 4 60 0 1 1512 2157 134 88 13 chr5 121560757 121561142 -30976117 - MTC LTR MaLR -7 414 1 1 1512 304 348 29 29 chr5 121561219 121561358 -30975901 - MIRc SINE MIR -95 173 35 1 1512 357 258 0 20 chr5 121561975 121562074 -30975185 - B4A SINE B4 -194 98 2 1 1512 283 61 37 92 chr5 121562857 121562966 -30974293 + T-rich Low_complexity Low_complexity 3 105 0 1 1512 652 106 9 19 chr5 121562967 121563073 -30974186 - B1_Mus2 SINE Alu -1 146 42 1 1512 303 328 0 0 chr5 121563075 121563191 -30974068 + (CCCCAG)n Simple_repeat Simple_repeat 1 116 0 1 1512 239 189 19 19 chr5 121563192 121563246 -30974013 + MurSatRep1 Unknown Unknown 230 283 -1854 1 1512 397 231 33 11 chr5 121563375 121563467 -30973792 + B1F SINE Alu 54 147 -2 1 1512 219 352 0 0 chr5 121563490 121563561 -30973698 + ID4_ SINE ID 13 83 0 1 1512 345 47 0 0 chr5 121563919 121563962 -30973297 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1512 245 214 36 0 chr5 121564464 121564520 -30972739 + B4A SINE B4 103 160 -132 1 1512 790 273 31 0 chr5 121564710 121564904 -30972355 - ID_B1 SINE B4 -14 210 11 1 1512 253 180 315 0 chr5 121564967 121565006 -30972253 + PB1D10 SINE Alu 1 117 0 1 1512 256 140 40 0 chr5 121565006 121565056 -30972203 + ID_B1 SINE B4 173 224 0 1 1512 226 212 0 50 chr5 121565325 121565444 -30971815 + CT-rich Low_complexity Low_complexity 4 116 0 1 1512 370 275 29 44 chr5 121566520 121566657 -30970602 + B4 SINE B4 77 211 -81 1 1512 649 184 14 22 chr5 121566540 121566679 -30970580 + B1F2 SINE Alu 11 148 -1 1 1512 1110 74 0 7 chr5 121566762 121566911 -30970348 + B1_Mus1 SINE Alu 1 148 0 1 1512 904 176 9 6 chr5 121567286 121567603 -30969656 + CT-rich Low_complexity Low_complexity 1 317 0 1 1512 387 291 31 52 chr5 121567850 121568033 -30969226 - MTEa LTR MaLR -10 369 186 1 1512 360 0 0 0 chr5 121568147 121568187 -30969072 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1512 865 264 179 6 chr5 121568391 121568738 -30968521 - MTD LTR MaLR -10 409 3 1 1512 816 159 44 13 chr5 121568883 121569042 -30968217 - RSINE1 SINE B4 0 165 2 1 1512 463 257 45 19 chr5 121569138 121569310 -30967949 + MIR3 SINE MIR 2 175 -33 1 1512 414 197 0 0 chr5 121569375 121569451 -30967808 - ID_B1 SINE B4 0 224 149 1 1512 282 271 70 40 chr5 121569451 121569475 -30967784 - PB1D10 SINE Alu 0 117 15 1 1512 183 100 0 0 chr5 121569749 121569779 -30967480 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1512 682 251 42 10 chr5 121570068 121570261 -30966998 + B3 SINE B2 5 203 -13 1 1512 503 220 0 8 chr5 121570261 121570394 -30966865 + (CATATA)n Simple_repeat Simple_repeat 1 132 0 1 1512 633 203 8 0 chr5 121570462 121570580 -30966679 + B1_Mur1 SINE Alu 9 127 -22 1 1512 562 237 15 30 chr5 121570637 121570772 -30966487 + ID_B1 SINE B4 87 219 -5 2 1512 343 306 7 30 chr5 121571255 121571436 -30965823 - L2b LINE L2 -340 3079 2906 2 1512 227 187 12 85 chr5 121571489 121571571 -30965688 - L2b LINE L2 -737 2682 2607 2 1512 534 16 0 0 chr5 121571868 121571931 -30965328 + (CA)n Simple_repeat Simple_repeat 1 63 0 2 1512 492 18 0 0 chr5 121572011 121572068 -30965191 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 2 1512 2499 207 82 48 chr5 121572305 121572950 -30964309 + RMER1C Other Other 676 1342 0 2 1512 249 191 63 0 chr5 121572975 121573038 -30964221 + B4A SINE B4 3 69 -223 2 1512 600 219 114 20 chr5 121573145 121573180 -30964079 - RSINE1 SINE B4 0 165 125 2 1512 450 0 0 0 chr5 121573180 121573230 -30964029 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1512 600 219 114 20 chr5 121573230 121573343 -30963916 - RSINE1 SINE B4 -41 124 3 2 1512 263 224 0 0 chr5 121573739 121573797 -30963462 + B4 SINE B4 167 224 -68 2 1512 306 0 0 0 chr5 121573810 121573844 -30963415 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1512 256 315 43 21 chr5 121573932 121573967 -30963292 + B4 SINE B4 50 86 -206 2 1512 446 287 19 0 chr5 121573967 121574075 -30963184 + PB1D10 SINE Alu 2 111 -6 2 1512 561 30 0 0 chr5 121574089 121574156 -30963103 + (GGAA)n Simple_repeat Simple_repeat 4 70 0 2 1512 787 135 16 37 chr5 121574645 121574892 -30962367 + G-rich Low_complexity Low_complexity 1 241 0 2 1512 704 112 11 50 chr5 121574907 121575086 -30962173 + G-rich Low_complexity Low_complexity 5 176 0 2 1512 586 264 119 16 chr5 121575171 121575356 -30961903 - B3 SINE B2 -12 204 1 2 1512 225 167 24 0 chr5 121575356 121575398 -30961861 + Lx8 LINE L1 6679 6721 -752 2 1512 621 266 18 76 chr5 121575963 121576134 -30961125 + RSINE1 SINE B4 5 165 0 2 1512 507 244 118 19 chr5 121576160 121576329 -30960930 + B3 SINE B2 15 181 -14 2 1512 876 151 7 20 chr5 121576332 121576481 -30960778 - B1_Mur4 SINE Alu 0 150 4 2 1512 25 0 0 0 chr5 121576482 121576507 -30960752 + AT_rich Low_complexity Low_complexity 1 25 0 2 1512 349 145 130 0 chr5 121576521 121576590 -30960669 + PB1D9 SINE Alu 35 112 -8 2 1512 482 282 0 18 chr5 121576885 121576997 -30960262 + ID_B1 SINE B4 106 215 -9 2 1512 353 436 6 0 chr5 121577002 121577181 -30960078 + G-rich Low_complexity Low_complexity 1 180 0 2 1512 453 358 17 28 chr5 121577122 121577300 -30959959 + polypurine Low_complexity Low_complexity 1 176 0 2 1512 766 139 29 14 chr5 121577834 121577973 -30959286 + B1_Mur2 SINE Alu 9 149 0 2 1512 1021 92 165 0 chr5 121578064 121578228 -30959031 - B2_Mm2 SINE B2 -4 191 1 2 1512 234 176 159 14 chr5 121578228 121578297 -30958962 - ID_B1 SINE B4 -41 183 105 2 1512 468 334 35 12 chr5 121578316 121578604 -30958655 - L1MA5 LINE L1 0 6300 6006 2 1512 738 259 205 30 chr5 121578710 121579012 -30958247 + MTD LTR MaLR 45 399 -20 2 1512 227 311 159 12 chr5 121579403 121579566 -30957693 + RMER15 LTR ERVL 324 510 -65 2 1512 540 0 0 0 chr5 121584239 121584299 -30952960 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 1512 1084 51 0 7 chr5 121586641 121586780 -30950479 + B1_Mm SINE Alu 1 138 -9 2 1512 1497 52 11 0 chr5 121587663 121587854 -30949405 - B2_Mm2 SINE B2 -1 194 2 2 1512 494 184 0 39 chr5 121588666 121588768 -30948491 + MT2C_Mm LTR ERVL 1 98 -377 2 1512 636 171 8 25 chr5 121589041 121589161 -30948098 - PB1D9 SINE Alu -2 118 1 2 1512 256 335 91 66 chr5 121589479 121589677 -30947582 - B3 SINE B2 -8 208 6 2 1512 259 295 38 13 chr5 121589708 121589787 -30947472 - PB1D10 SINE Alu -4 113 33 2 1512 377 345 111 67 chr5 121589870 121590168 -30947091 + L1MC4 LINE L1 7732 8042 0 2 1512 815 182 7 26 chr5 121590209 121590361 -30946898 + B1_Mur4 SINE Alu 1 149 -1 2 1512 265 312 122 27 chr5 121590663 121590811 -30946448 + B3A SINE B2 2 163 -35 2 1512 574 280 77 10 chr5 121590913 121591122 -30946137 - ID_B1 SINE B4 0 224 2 2 1512 557 203 66 29 chr5 121591144 121591281 -30945978 - B1_Mur2 SINE Alu -3 146 5 2 1512 273 118 0 0 chr5 121591384 121591435 -30945824 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 2 1512 284 244 12 49 chr5 121591966 121592048 -30945211 + ID4 SINE ID 5 83 0 2 1512 675 161 17 0 chr5 121592228 121592346 -30944913 + B1_Mm SINE Alu 7 126 -21 2 1512 213 65 0 0 chr5 121594117 121594148 -30943111 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 2 1512 311 258 196 0 chr5 121594157 121594254 -30943005 + PB1D9 SINE Alu 3 118 -2 2 1512 317 322 8 25 chr5 121595485 121595606 -30941653 + GA-rich Low_complexity Low_complexity 4 122 0 2 1512 288 259 0 0 chr5 121596173 121596227 -30941032 + RSINE1 SINE B4 3 56 -109 2 1512 1292 90 11 0 chr5 121597298 121597486 -30939773 + B2_Mm2 SINE B2 1 190 -5 2 1512 23 0 0 0 chr5 121597489 121597512 -30939747 + AT_rich Low_complexity Low_complexity 1 23 0 2 1512 297 283 18 124 chr5 121597554 121597667 -30939592 + RSINE1 SINE B4 65 165 0 2 1512 198 0 0 0 chr5 121597667 121597689 -30939570 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1512 341 220 8 128 chr5 121597713 121597730 -30939529 + MT2B LTR ERVL 156 157 -444 2 1512 577 182 27 0 chr5 121597730 121597840 -30939419 + B1_Mur1 SINE Alu 1 113 -36 2 1512 683 213 7 0 chr5 121597861 121597997 -30939262 + B1_Mur1 SINE Alu 1 137 -12 2 1512 543 31 0 0 chr5 121597997 121598062 -30939197 + (TAG)n Simple_repeat Simple_repeat 3 67 0 2 1512 29 60 0 0 chr5 121598066 121598116 -30939143 + AT_rich Low_complexity Low_complexity 1 50 0 2 1512 1174 54 0 0 chr5 121598672 121598819 -30938440 + B1_Mus1 SINE Alu 2 148 0 2 1512 186 128 0 0 chr5 121598821 121598860 -30938399 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1512 1323 51 6 28 chr5 121599831 121600013 -30937246 + B2_Mm1a SINE B2 1 178 -15 2 1512 366 42 0 0 chr5 121600014 121600062 -30937197 + (GAAA)n Simple_repeat Simple_repeat 4 51 0 2 1512 617 194 0 0 chr5 121600088 121600209 -30937050 + B1_Mur1 SINE Alu 13 133 -16 2 1512 452 263 97 8 chr5 121600224 121600358 -30936901 + B1F2 SINE Alu 1 146 -3 2 1512 264 294 87 63 chr5 121601709 121601836 -30935423 + ID_B1 SINE B4 95 224 0 2 1512 723 150 37 15 chr5 121601957 121602092 -30935167 - B1_Mus2 SINE Alu -1 146 9 2 1512 230 282 42 0 chr5 121602737 121602808 -30934451 + L1MD3 LINE L1 7913 7986 -9 2 1512 351 227 0 0 chr5 121602850 121602916 -30934343 - ID4_ SINE ID -14 69 4 2 1512 359 260 29 9 chr5 121603340 121603445 -30933814 + PB1D10 SINE Alu 11 117 0 2 1512 21 0 0 0 chr5 121603494 121603515 -30933744 + AT_rich Low_complexity Low_complexity 1 21 0 2 1512 387 0 0 0 chr5 121603770 121603813 -30933446 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1512 195 100 0 0 chr5 121604447 121604477 -30932782 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 2 1512 323 239 43 164 chr5 121604604 121604744 -30932515 + RSINE1 SINE B4 43 165 0 2 1512 402 39 0 0 chr5 121604761 121604813 -30932446 + (GGGA)n Simple_repeat Simple_repeat 4 55 0 2 1512 186 43 0 0 chr5 121605508 121605531 -30931728 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1512 982 83 8 0 chr5 121606686 121606819 -30930440 + B1_Mus1 SINE Alu 2 135 -13 2 1512 180 0 0 0 chr5 121606819 121606839 -30930420 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2 1512 333 0 0 0 chr5 121607092 121607129 -30930130 + (A)n Simple_repeat Simple_repeat 1 37 0 2 1512 603 236 103 41 chr5 121607250 121607444 -30929815 + B3 SINE B2 1 206 -10 2 1512 400 270 203 36 chr5 121608628 121608820 -30928439 + ID_B1 SINE B4 1 224 0 2 1512 197 297 95 0 chr5 121611753 121611827 -30925432 + MIRb SINE MIR 99 179 -89 2 1512 694 138 0 9 chr5 121612001 121612111 -30925148 + B1_Mus1 SINE Alu 40 148 0 2 1512 307 369 29 19 chr5 121613447 121613657 -30923602 + L1MA9 LINE L1 5790 6001 -311 2 1512 287 320 174 33 chr5 121614055 121614239 -30923020 - MER2 DNA MER2_type -128 217 8 2 1512 384 295 27 0 chr5 121614903 121615015 -30922244 - PB1D10 SINE Alu -1 116 2 2 1512 925 121 14 7 chr5 121615068 121615198 -30922061 + B1_Mus1 SINE Alu 6 137 -11 2 1512 216 0 0 0 chr5 121615198 121615222 -30922037 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 2 1512 925 121 14 7 chr5 121615222 121615233 -30922026 + B1_Mus1 SINE Alu 138 148 0 2 1512 1492 54 22 0 chr5 121615293 121615478 -30921781 + B2_Mm2 SINE B2 1 189 -6 2 1512 1146 59 0 0 chr5 121615478 121615613 -30921646 + B1_Mus2 SINE Alu 1 136 -11 2 1512 2219 206 27 0 chr5 121615743 121616150 -30921109 + MTD LTR MaLR 1 418 -1 2 1512 283 308 29 0 chr5 121616156 121616260 -30920999 + ID_B1 SINE B4 116 222 -2 2 1512 661 259 65 61 chr5 121617351 121617565 -30919694 + ID_B1 SINE B4 3 217 -7 2 1512 852 98 55 14 chr5 121617573 121617718 -30919541 + L1Md_F2 LINE L1 6430 6580 -2 2 1512 1449 65 0 26 chr5 121618516 121618706 -30918553 + B2_Mm2 SINE B2 2 186 -9 2 1512 1673 36 0 0 chr5 121618782 121618974 -30918285 + B2_Mm1t SINE B2 1 192 -1 2 1512 414 262 39 0 chr5 121619024 121619127 -30918132 + PB1D10 SINE Alu 5 111 -6 2 1512 369 0 0 0 chr5 121619128 121619169 -30918090 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 2 1512 534 240 60 83 chr5 121619195 121619363 -30917896 + RSINE1 SINE B4 2 165 0 2 1512 31 68 0 0 chr5 121619382 121619441 -30917818 + AT_rich Low_complexity Low_complexity 1 59 0 2 1512 1164 79 0 0 chr5 121619455 121619594 -30917665 - B1_Mus2 SINE Alu -8 139 1 2 1512 27 29 0 0 chr5 121619596 121619630 -30917629 + AT_rich Low_complexity Low_complexity 1 34 0 2 1512 204 163 0 44 chr5 121619878 121619923 -30917336 + L3 LINE CR1 3721 3763 -726 2 1512 558 264 74 0 chr5 121619932 121620053 -30917206 + B1_Mur1 SINE Alu 9 138 -11 3 1512 420 169 0 0 chr5 121620053 121620130 -30917129 + (TGGA)n Simple_repeat Simple_repeat 1 77 0 3 1512 1007 173 119 0 chr5 121620868 121621053 -30916206 + B3 SINE B2 1 207 -9 3 1512 1453 89 0 0 chr5 121621053 121621242 -30916017 - B2_Mm1a SINE B2 -3 190 1 3 1512 991 89 0 99 chr5 121621274 121621301 -30915958 + B1_Mus1 SINE Alu 1 27 -121 3 1512 1491 68 11 0 chr5 121621301 121621491 -30915768 - B2_Mm1t SINE B2 0 193 2 3 1512 995 76 0 16 chr5 121621491 121621625 -30915634 + B1_Mus2 SINE Alu 15 146 -2 3 1512 225 65 0 0 chr5 121621625 121621656 -30915603 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1512 918 163 7 7 chr5 121621667 121621815 -30915444 + B1_Mur4 SINE Alu 3 150 0 3 1512 227 310 37 83 chr5 121622780 121622889 -30914370 - PB1D10 SINE Alu -5 112 9 3 1512 542 190 185 25 chr5 121623064 121623183 -30914076 + B3A SINE B2 5 142 -56 3 1512 307 267 123 39 chr5 121623326 121623529 -30913730 + ID_B1 SINE B4 3 222 -2 3 1512 617 117 42 11 chr5 121623904 121623999 -30913260 + B1_Mus2 SINE Alu 27 124 -23 3 1512 207 156 0 0 chr5 121624005 121624037 -30913222 + GA-rich Low_complexity Low_complexity 4 35 0 3 1512 218 75 50 0 chr5 121624039 121624079 -30913180 + (CAGG)n Simple_repeat Simple_repeat 1 42 0 3 1512 229 91 0 0 chr5 121624350 121624383 -30912876 + ID_B1 SINE B4 133 165 -59 3 1512 252 196 0 82 chr5 121624631 121624692 -30912567 - PB1D7 SINE Alu 0 120 65 3 1512 568 217 30 90 chr5 121624823 121624990 -30912269 - RSINE1 SINE B4 -6 159 3 3 1512 1070 44 0 7 chr5 121625107 121625243 -30912016 + B1_Mus2 SINE Alu 13 147 0 3 1512 1201 77 19 0 chr5 121625247 121625403 -30911856 - B2_Mm2 SINE B2 -35 160 2 3 1512 741 208 180 0 chr5 121625406 121625584 -30911675 - B3 SINE B2 -6 210 1 3 1512 590 277 43 43 chr5 121625925 121626110 -30911149 + B4A SINE B4 2 186 -106 3 1512 956 70 78 0 chr5 121626184 121626312 -30910947 + B1_Mus1 SINE Alu 5 142 -6 3 1512 600 53 0 0 chr5 121626314 121626390 -30910869 + (GAAAA)n Simple_repeat Simple_repeat 4 79 0 3 1512 402 225 12 0 chr5 121626414 121626494 -30910765 + B1_Mur1 SINE Alu 52 132 -17 3 1512 257 221 77 87 chr5 121626494 121626518 -30910741 + MT2B LTR ERVL 209 311 -290 3 1512 231 222 0 53 chr5 121626631 121626688 -30910571 + (CATG)n Simple_repeat Simple_repeat 1 54 0 3 1512 872 245 18 50 chr5 121626899 121627118 -30910141 - B3 SINE B2 -4 212 1 3 1512 244 214 142 100 chr5 121627229 121627309 -30909950 - AluG_3 SINE Alu -92 219 138 3 1512 400 223 137 24 chr5 121627521 121627645 -30909614 + ID_B1 SINE B4 87 224 0 3 1512 350 319 20 86 chr5 121627673 121627755 -30909504 + ID SINE ID 12 83 -141 3 1512 312 234 91 0 chr5 121627755 121627832 -30909427 + PB1D9 SINE Alu 2 85 -35 3 1512 1138 59 7 0 chr5 121627832 121627968 -30909291 + B1_Mus1 SINE Alu 2 138 -10 3 1512 369 0 0 0 chr5 121627968 121628009 -30909250 + (CATA)n Simple_repeat Simple_repeat 4 44 0 3 1512 215 246 35 17 chr5 121628061 121628119 -30909140 + RSINE1 SINE B4 1 59 -106 3 1512 260 291 76 19 chr5 121628463 121628568 -30908691 + PB1D9 SINE Alu 10 120 0 3 1512 477 250 161 0 chr5 121628572 121628696 -30908563 + B1F2 SINE Alu 1 144 -5 3 1512 197 132 0 26 chr5 121628696 121628735 -30908524 + GA-rich Low_complexity Low_complexity 3 40 0 3 1512 314 323 44 66 chr5 121628801 121628937 -30908322 + RSINE1 SINE B4 18 150 -15 3 1512 210 257 139 28 chr5 121628994 121629066 -30908193 - PB1 SINE Alu 0 127 48 3 1512 213 140 271 34 chr5 121629123 121629182 -30908077 - ID4_ SINE ID -10 73 1 3 1512 346 207 42 94 chr5 121629412 121629508 -30907751 - ID_B1 SINE B4 0 224 134 3 1512 769 215 0 0 chr5 121629823 121629953 -30907306 + RSINE1 SINE B4 4 133 -32 3 1512 411 73 0 0 chr5 121629989 121630044 -30907215 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1512 334 284 86 20 chr5 121630060 121630211 -30907048 + RSINE1 SINE B4 4 164 -1 3 1512 44 46 0 0 chr5 121630239 121630304 -30906955 + AT_rich Low_complexity Low_complexity 1 65 0 3 1512 246 217 84 28 chr5 121630516 121630587 -30906672 - PB1D7 SINE Alu -17 103 29 3 1512 1235 54 0 0 chr5 121630725 121630872 -30906387 + B1_Mus1 SINE Alu 2 148 0 3 1512 457 260 0 0 chr5 121630911 121631015 -30906244 + ID_B1 SINE B4 121 224 0 3 1512 558 188 180 67 chr5 121631727 121631921 -30905338 - B3 SINE B2 0 216 1 3 1512 588 198 46 52 chr5 121632071 121632230 -30905029 + B1F SINE Alu 12 299 -12 3 1512 497 207 90 0 chr5 121632244 121632355 -30904904 + B3 SINE B2 95 215 -1 3 1512 31 68 0 0 chr5 121632680 121632739 -30904520 + AT_rich Low_complexity Low_complexity 1 59 0 3 1512 542 120 0 0 chr5 121632760 121632835 -30904424 + B1_Mus2 SINE Alu 68 142 -5 3 1512 440 232 61 0 chr5 121632877 121632976 -30904283 - PB1D7 SINE Alu -6 114 10 3 1512 418 286 61 31 chr5 121634003 121634147 -30903112 - PB1D10 SINE Alu -2 115 11 3 1512 426 236 45 69 chr5 121634504 121634718 -30902541 + ID_B1 SINE B4 26 216 -8 3 23 421 247 0 0 chr5 121634773 121634850 -30902409 + ID4 SINE ID 1 77 -6 3 1513 230 283 131 23 chr5 121635436 121635566 -30901693 + L2c LINE L2 2719 2862 -557 3 1513 343 185 0 15 chr5 121635619 121635685 -30901574 + tRNA-Ala-GCY_ tRNA tRNA 3 67 -8 3 1513 339 237 9 142 chr5 121635685 121635724 -30901535 + ID4 SINE ID 16 98 -54 3 1513 192 212 0 0 chr5 121635859 121635892 -30901367 + L2b LINE L2 3310 3342 -33 3 1513 454 220 111 29 chr5 121635960 121636130 -30901129 + ID_B1 SINE B4 43 223 -1 3 1513 504 220 81 18 chr5 121636190 121636301 -30900958 - PB1D7 SINE Alu 0 120 3 3 1513 274 364 5 80 chr5 121636301 121636429 -30900830 - MT2B2 LTR ERVL -427 157 46 3 1513 465 299 78 54 chr5 121636345 121636511 -30900748 + ID_B1 SINE B4 6 175 -49 3 1513 443 240 56 37 chr5 121636427 121636535 -30900724 + PB1D10 SINE Alu 7 116 -1 3 1513 2881 115 73 32 chr5 121636549 121636799 -30900460 + RLTR28 LTR ERVL 1 258 -266 3 1513 859 48 172 31 chr5 121636799 121636927 -30900332 + B1_Mus2 SINE Alu 1 146 -1 3 1513 2881 115 73 32 chr5 121636927 121637170 -30900089 + RLTR28 LTR ERVL 259 514 -10 3 1513 439 259 0 0 chr5 121638309 121638394 -30898865 + B1F2 SINE Alu 52 136 -13 3 1513 190 278 0 18 chr5 121638444 121638499 -30898760 + L2c LINE L2 3113 3166 -221 3 1513 594 270 62 1 chr5 121638667 121638855 -30898404 + B3A SINE B2 19 216 0 3 1513 260 276 104 0 chr5 121638856 121639019 -30898240 + L1M3 LINE L1 4752 4931 -1209 3 1513 519 325 0 0 chr5 121639484 121639610 -30897649 + RSINE1 SINE B4 32 157 -8 3 1513 1403 80 11 0 chr5 121639641 121639800 -30897459 + B2_Mm1a SINE B2 2 160 -33 3 1513 207 0 0 0 chr5 121639800 121639823 -30897436 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3 1513 1403 80 11 0 chr5 121639823 121639851 -30897408 + B2_Mm1a SINE B2 161 190 -3 3 1513 330 91 0 0 chr5 121639876 121639931 -30897328 + (A)n Simple_repeat Simple_repeat 1 55 0 3 1513 277 284 92 36 chr5 121640024 121640160 -30897099 + L1MA10 LINE L1 6036 6271 -63 3 1513 220 27 54 0 chr5 121640167 121640204 -30897055 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1513 1178 62 0 0 chr5 121640204 121640341 -30896918 - B1_Mus2 SINE Alu -9 138 2 3 1513 237 281 105 38 chr5 121640341 121640358 -30896901 + L1MA10 LINE L1 6161 6177 -2 3 1513 252 293 39 26 chr5 121640385 121640462 -30896797 + B1F SINE Alu 21 98 -51 3 1513 194 211 167 50 chr5 121640683 121640743 -30896516 + MIRc SINE MIR 88 154 -114 3 1513 24 0 0 0 chr5 121641000 121641024 -30896235 + GC_rich Low_complexity Low_complexity 1 24 0 3 1513 21 0 0 0 chr5 121641087 121641108 -30896151 + GC_rich Low_complexity Low_complexity 1 21 0 3 1513 215 242 30 20 chr5 121641395 121641496 -30895763 + (CCG)n Simple_repeat Simple_repeat 3 104 0 3 1513 542 267 7 43 chr5 121641697 121641838 -30895421 + B3A SINE B2 49 184 -14 3 1513 765 187 43 0 chr5 121641859 121641998 -30895261 + B1_Mur2 SINE Alu 2 146 -3 3 1513 1205 48 14 0 chr5 121642021 121642166 -30895093 - B1_Mus2 SINE Alu 0 147 1 3 1513 195 42 0 0 chr5 121642170 121642194 -30895065 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 1513 892 240 28 28 chr5 121642201 121642415 -30894844 - B3 SINE B2 -2 214 1 3 1513 463 289 183 45 chr5 121642465 121642711 -30894548 - Tigger7 DNA MER2_type -1921 570 291 3 1513 1134 81 0 0 chr5 121642800 121642936 -30894323 + B1_Mus1 SINE Alu 1 136 -12 3 1513 240 59 0 0 chr5 121642936 121642970 -30894289 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 1513 537 239 23 23 chr5 121642970 121643103 -30894156 + B3 SINE B2 28 160 -56 3 1513 317 243 100 64 chr5 121643117 121643227 -30894032 - Tigger7 DNA MER2_type -2374 117 4 3 1513 967 143 14 7 chr5 121643254 121643402 -30893857 - B1_Mur1 SINE Alu 0 149 1 3 1513 277 301 191 24 chr5 121643459 121643585 -30893674 - RSINE1 SINE B4 -17 148 2 3 1513 435 38 0 0 chr5 121643693 121643746 -30893513 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 3 1513 181 370 64 18 chr5 121643752 121643862 -30893397 - L2 LINE L2 -372 3047 2933 3 1513 694 200 64 7 chr5 121643867 121644008 -30893251 + B1_Mur3 SINE Alu 1 149 0 3 1513 1120 67 0 51 chr5 121644068 121644226 -30893033 + B1_Mur4 SINE Alu 1 150 0 3 1513 585 196 9 36 chr5 121644233 121644344 -30892915 + B1F2 SINE Alu 41 148 -1 3 1513 3747 113 35 11 chr5 121644382 121644929 -30892330 + Lx4A LINE L1 6499 7058 0 3 1513 587 111 259 0 chr5 121644950 121645058 -30892201 + B2_Mm2 SINE B2 2 137 -58 3 1513 287 236 0 0 chr5 121645136 121645191 -30892068 + RSINE1 SINE B4 84 138 -27 3 1513 233 222 0 29 chr5 121645228 121645367 -30891892 + (CA)n Simple_repeat Simple_repeat 2 136 0 4 1513 409 273 39 103 chr5 121645369 121645447 -30891812 + ID_B1 SINE B4 79 152 -72 4 1513 1500 63 16 0 chr5 121645447 121645637 -30891622 - B2_Mm2 SINE B2 -1 194 2 4 1513 409 273 39 103 chr5 121645637 121645713 -30891546 + ID_B1 SINE B4 153 223 -1 4 1513 1128 90 0 0 chr5 121645718 121645863 -30891396 - B1_Mus2 SINE Alu -2 145 1 4 1513 532 144 31 113 chr5 121645907 121646102 -30891157 + RMER17C LTR ERVK 97 275 -135 4 1513 259 254 68 60 chr5 121646167 121646208 -30891051 - B4 SINE B4 -174 118 1 4 1513 549 68 0 26 chr5 121646208 121646284 -30890975 - B2_Mm2 SINE B2 -121 74 1 4 1513 712 250 99 25 chr5 121646385 121646586 -30890673 - ID_B1 SINE B4 -8 216 1 4 1513 335 273 124 36 chr5 121646588 121646725 -30890534 + MER2 DNA MER2_type 117 265 -80 4 1513 28 0 0 0 chr5 121647627 121647655 -30889604 + AT_rich Low_complexity Low_complexity 1 28 0 4 1513 738 266 19 86 chr5 121647755 121647965 -30889294 - B3A SINE B2 0 198 3 4 1513 894 278 9 9 chr5 121647992 121648210 -30889049 - ID_B1 SINE B4 -4 220 3 4 1513 312 94 0 0 chr5 121648229 121648282 -30888977 + (TTAG)n Simple_repeat Simple_repeat 3 55 0 4 1513 753 201 7 35 chr5 121648282 121648426 -30888833 - B1_Mus1 SINE Alu -8 140 1 4 1513 195 365 103 10 chr5 121648634 121648731 -30888528 + L2b LINE L2 3240 3345 -30 4 1513 262 288 24 48 chr5 121648773 121648857 -30888402 + RSINE1 SINE B4 71 152 -13 4 1513 414 0 0 0 chr5 121648860 121648906 -30888353 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1513 389 20 20 0 chr5 121648906 121648956 -30888303 + (GA)n Simple_repeat Simple_repeat 1 51 0 4 1513 332 73 0 35 chr5 121648958 121649015 -30888244 + (GGA)n Simple_repeat Simple_repeat 3 57 0 4 1513 377 333 31 0 chr5 121649028 121649157 -30888102 + B1F1 SINE Alu 1 133 -16 4 1513 1144 68 7 7 chr5 121649157 121649303 -30887956 + B1_Mus1 SINE Alu 2 148 0 4 1513 231 61 0 0 chr5 121649305 121649338 -30887921 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1513 579 297 38 49 chr5 121649367 121649409 -30887850 + B3 SINE B2 1 38 -178 4 1513 1482 201 194 97 chr5 121649409 121649848 -30887411 + MT2A LTR ERVL 3 489 -44 4 1513 198 103 0 0 chr5 121649848 121649877 -30887382 + (TGGA)n Simple_repeat Simple_repeat 1 29 0 4 1513 1482 201 194 97 chr5 121649877 121649921 -30887338 + MT2A LTR ERVL 490 533 0 4 1513 579 297 38 49 chr5 121649921 121650062 -30887197 + B3 SINE B2 39 182 -34 4 1513 221 206 47 16 chr5 121650064 121650128 -30887131 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 4 1513 264 214 32 25 chr5 121650132 121650290 -30886969 + (TCTA)n Simple_repeat Simple_repeat 4 162 0 4 1513 550 241 21 70 chr5 121650364 121650507 -30886752 + RSINE1 SINE B4 3 138 -27 4 1513 180 0 0 0 chr5 121650511 121650531 -30886728 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1513 243 61 0 0 chr5 121650626 121650659 -30886600 + (TTA)n Simple_repeat Simple_repeat 2 34 0 4 1513 1161 64 0 0 chr5 121650661 121650802 -30886457 - B1_Mus2 SINE Alu -6 141 1 4 1513 1208 135 16 0 chr5 121650803 121650988 -30886271 - B2_Mm2 SINE B2 -6 189 2 4 1513 761 214 11 13 chr5 121650991 121651160 -30886099 - B3 SINE B2 -28 167 1 4 1513 225 0 0 0 chr5 121651285 121651310 -30885949 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 4 1513 1111 0 0 0 chr5 121651310 121651434 -30885825 + MT2_Mm LTR ERVL 192 315 -178 4 1513 468 0 0 0 chr5 121651434 121651486 -30885773 + (TTTA)n Simple_repeat Simple_repeat 4 55 0 4 1513 805 60 207 0 chr5 121651488 121651604 -30885655 - B1_Mus2 SINE Alu -6 141 2 4 1513 282 160 0 0 chr5 121651621 121651671 -30885588 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4 1513 785 220 0 0 chr5 121651738 121651879 -30885380 + B1_Mur2 SINE Alu 3 143 -6 4 1513 895 87 0 45 chr5 121652057 121652190 -30885069 - B1_Mus1 SINE Alu 0 148 22 4 1513 1254 48 0 0 chr5 121652276 121652423 -30884836 - B1_Mus2 SINE Alu 0 147 1 4 1513 347 248 142 0 chr5 121652492 121652590 -30884669 + B1_Mus2 SINE Alu 1 114 -3 4 1513 924 135 60 24 chr5 121652586 121652753 -30884506 + B2_Mm2 SINE B2 20 192 -3 4 1513 441 241 98 0 chr5 121652951 121653063 -30884196 + RSINE1 SINE B4 3 125 -40 4 1513 236 53 0 26 chr5 121653063 121653102 -30884157 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1513 603 69 0 0 chr5 121653114 121653242 -30884017 + L1Md_A LINE L1 6496 6582 0 4 1513 313 310 31 110 chr5 121653364 121653491 -30883768 + RSINE1 SINE B4 49 165 0 4 1513 827 196 14 0 chr5 121653651 121653799 -30883460 - B1_Mur4 SINE Alu 0 150 1 4 1513 206 32 32 0 chr5 121653813 121653844 -30883415 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1513 265 88 0 0 chr5 121653846 121653880 -30883379 - B1_Mm SINE Alu -7 140 107 4 1513 1240 97 16 33 chr5 121653880 121654062 -30883197 - B2_Mm2 SINE B2 -15 180 2 4 1513 1121 89 0 0 chr5 121654091 121654237 -30883022 + B1_Mus2 SINE Alu 2 147 0 4 1513 354 296 78 9 chr5 121654267 121654383 -30882876 - RSINE1 SINE B4 -39 126 3 4 1513 569 166 44 6 chr5 121656400 121656523 -30880736 + PB1D9 SINE Alu 16 142 -7 4 1513 246 300 57 0 chr5 121656965 121657035 -30880224 - B1_Mur3 SINE Alu -70 79 6 4 1513 241 163 47 0 chr5 121657035 121657078 -30880181 - ID_B1 SINE B4 -3 221 177 4 1513 183 42 0 0 chr5 121657397 121657421 -30879838 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1513 1029 96 15 0 chr5 121657421 121657557 -30879702 - B1_Mus2 SINE Alu -9 138 1 4 1513 412 185 37 0 chr5 121658276 121658357 -30878902 - MT2B LTR ERVL -361 240 157 4 1513 471 202 149 0 chr5 121659214 121659328 -30877931 - RLTR14 LTR ERV1 -41 341 211 4 1513 380 183 261 0 chr5 121659961 121660076 -30877183 - B1_Mus2 SINE Alu -1 146 2 4 1513 1585 27 21 16 chr5 121660138 121660328 -30876931 - B2_Mm1a SINE B2 -1 192 2 4 1513 547 157 85 23 chr5 121660405 121660535 -30876724 + URR1B DNA MER1_type 88 225 0 4 1513 275 285 78 35 chr5 121660827 121660969 -30876290 - ID_B1 SINE B4 -74 150 3 4 1513 381 118 206 0 chr5 121661146 121661214 -30876045 - B2_Mm2 SINE B2 -111 84 3 4 1513 23 0 0 0 chr5 121661239 121661262 -30875997 + AT_rich Low_complexity Low_complexity 1 23 0 4 1513 520 227 21 0 chr5 121661363 121661460 -30875799 + B3 SINE B2 1 99 -117 4 1513 801 274 10 15 chr5 121661537 121661737 -30875522 - B3 SINE B2 -13 203 5 4 1513 22 0 0 0 chr5 121661956 121661978 -30875281 + AT_rich Low_complexity Low_complexity 1 22 0 4 1513 799 258 78 30 chr5 121662162 121662394 -30874865 + B4A SINE B4 1 243 -49 4 1513 352 304 0 36 chr5 121662449 121662589 -30874670 + (CATATA)n Simple_repeat Simple_repeat 4 138 0 4 1513 698 79 22 2 chr5 121662647 121662756 -30874503 - B1_Mus2 SINE Alu 0 120 1 4 1513 270 73 0 0 chr5 121662759 121662800 -30874459 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1513 582 62 12 0 chr5 121662802 121662882 -30874377 - B1_Mur4 SINE Alu 0 150 70 4 1513 649 123 19 9 chr5 121662875 121662982 -30874277 - ORR1D1 LTR MaLR -266 108 1 4 1513 1261 77 26 57 chr5 121663432 121663624 -30873635 + B2_Mm2 SINE B2 1 186 -9 4 1513 1189 69 7 0 chr5 121664151 121664296 -30872963 - B1_Mus2 SINE Alu 0 147 2 4 1513 369 0 0 0 chr5 121664307 121664348 -30872911 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 4 1513 738 192 0 0 chr5 121664355 121664480 -30872779 - B1_Mur2 SINE Alu -18 131 7 4 1513 468 158 24 0 chr5 121664482 121664577 -30872682 - B1_Mur4 SINE Alu -1 149 46 4 1513 198 0 0 0 chr5 121664593 121664615 -30872644 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1513 1200 69 0 0 chr5 121664615 121664760 -30872499 - B1_Mus2 SINE Alu -2 145 1 4 1513 871 220 0 50 chr5 121664798 121664980 -30872279 + B3 SINE B2 1 173 -43 4 1513 2192 66 39 2 chr5 121664970 121665286 -30871973 - RLTR13C2 LTR ERVK -167 866 501 4 1513 239 54 27 0 chr5 121665286 121665323 -30871936 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 4 1513 329 294 54 11 chr5 121665350 121665443 -30871816 + ID_B1 SINE B4 122 218 -6 4 1513 1646 42 0 0 chr5 121665814 121666005 -30871254 - B2_Mm1a SINE B2 -1 192 2 4 1513 231 88 0 0 chr5 121666558 121666592 -30870667 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 4 1513 407 277 100 0 chr5 121666610 121666740 -30870519 + B1F1 SINE Alu 1 143 -6 4 1513 600 178 50 8 chr5 121666627 121666746 -30870513 + ID_B1 SINE B4 101 224 0 4 1513 1025 45 105 8 chr5 121666750 121666883 -30870376 + B1_Mus1 SINE Alu 1 146 -2 4 1513 186 0 28 56 chr5 121666883 121666919 -30870340 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4 1513 192 77 0 0 chr5 121666919 121666945 -30870314 + (GA)n Simple_repeat Simple_repeat 2 27 0 4 1513 511 229 207 0 chr5 121666952 121667092 -30870167 + B3 SINE B2 2 170 -46 4 1513 202 299 0 0 chr5 121667098 121667165 -30870094 + A-rich Low_complexity Low_complexity 1 67 0 4 1513 1526 57 0 40 chr5 121667165 121667365 -30869894 + B2_Mm1a SINE B2 1 192 -1 4 1513 232 111 0 0 chr5 121667384 121667420 -30869839 + ID SINE ID 6 41 -183 4 1513 553 129 24 0 chr5 121667489 121667574 -30869685 - B1_Mur4 SINE Alu 0 150 64 4 1513 436 139 267 0 chr5 121667574 121667675 -30869584 - B1_Mus1 SINE Alu -12 136 9 4 1513 252 292 162 44 chr5 121667675 121667710 -30869549 - ID_B1 SINE B4 -12 212 61 4 1513 682 85 274 0 chr5 121667710 121667816 -30869443 - B1_Mus1 SINE Alu -13 135 1 5 1513 182 33 67 0 chr5 121667827 121667857 -30869402 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 5 1513 1288 27 0 0 chr5 121667857 121668004 -30869255 - B1_Mus2 SINE Alu 0 147 1 5 1513 1397 97 0 0 chr5 121668009 121668195 -30869064 - B2_Mm2 SINE B2 -8 187 2 5 1513 234 321 48 0 chr5 121668609 121668693 -30868566 + MIRb SINE MIR 41 128 -140 5 1513 423 166 8 41 chr5 121669018 121669129 -30868130 + B1_Mus2 SINE Alu 47 149 0 5 1513 463 0 0 0 chr5 121669132 121669191 -30868068 + L1Md_T LINE L1 6524 6582 0 5 1513 275 0 29 0 chr5 121669195 121669230 -30868029 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1513 767 217 30 100 chr5 121669277 121669507 -30867752 - B3 SINE B2 0 216 3 5 1513 629 300 20 26 chr5 121669711 121669906 -30867353 - ID_B1 SINE B4 -17 207 14 5 1513 234 0 0 0 chr5 121670286 121670312 -30866947 + (CGG)n Simple_repeat Simple_repeat 2 27 0 5 1513 211 149 59 15 chr5 121670356 121670424 -30866835 + (CGCGG)n Simple_repeat Simple_repeat 4 74 0 5 1513 297 89 0 0 chr5 121670490 121670535 -30866724 + (CGG)n Simple_repeat Simple_repeat 1 45 0 5 1513 318 50 0 0 chr5 121670910 121670950 -30866309 + (TG)n Simple_repeat Simple_repeat 1 40 0 5 1513 306 0 0 0 chr5 121671094 121671128 -30866131 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 5 1513 246 62 0 0 chr5 121671194 121671226 -30866033 + (TG)n Simple_repeat Simple_repeat 2 33 0 5 1513 695 199 59 0 chr5 121672492 121672628 -30864631 - B1_Mur2 SINE Alu -1 148 5 5 1513 1041 78 0 21 chr5 121673396 121673541 -30863718 + ETnERV3-int LTR ERVK 4801 4942 -866 5 1513 1151 68 0 0 chr5 121673541 121673687 -30863572 + B1_Mus2 SINE Alu 2 147 0 5 1513 261 118 0 0 chr5 121673687 121673738 -30863521 + (A)n Simple_repeat Simple_repeat 1 51 0 5 1513 1913 124 21 39 chr5 121673744 121674014 -30863245 + ETnERV3-int LTR ERVK 4928 5187 -621 5 1513 1629 31 0 5 chr5 121674014 121674206 -30863053 - B2_Mm1a SINE B2 -1 192 2 5 1513 1913 124 21 39 chr5 121674206 121674270 -30862989 + ETnERV3-int LTR ERVK 5188 5256 -552 5 1513 1851 44 0 13 chr5 121674521 121674753 -30862506 - L1Md_F2 LINE L1 0 6582 6354 5 1513 507 35 0 0 chr5 121674842 121674900 -30862359 + L1Md_F2 LINE L1 6304 6361 -221 5 1513 283 287 75 0 chr5 121674991 121675085 -30862174 + MER2 DNA MER2_type 240 340 -5 5 1513 233 356 69 10 chr5 121675099 121675201 -30862058 + L2a LINE L2 3269 3376 -50 5 1513 3968 43 8 4 chr5 121675230 121675718 -30861541 - RLTR13C2 LTR ERVK -107 701 212 5 1513 504 325 12 18 chr5 121675818 121675906 -30861353 - MER2B DNA MER2_type -170 166 82 5 1513 504 185 28 9 chr5 121675906 121676015 -30861244 - PB1D9 SINE Alu -5 115 5 5 1513 504 325 12 18 chr5 121676015 121676092 -30861167 - MER2B DNA MER2_type -255 81 3 5 1513 258 309 0 0 chr5 121676092 121676160 -30861099 + (TG)n Simple_repeat Simple_repeat 1 68 0 5 1513 247 152 65 0 chr5 121676580 121676626 -30860633 - B3A SINE B2 -144 54 6 5 1513 300 218 135 16 chr5 121676627 121676753 -30860506 + L1MA9 LINE L1 5679 5819 -345 5 1513 1434 60 16 5 chr5 121676760 121676944 -30860315 + B2_Mm2 SINE B2 5 190 -5 5 1513 210 37 0 0 chr5 121677054 121677081 -30860178 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 5 1513 336 231 35 59 chr5 121677082 121677228 -30860031 + L1MA9 LINE L1 6010 6301 -11 5 1513 360 235 47 59 chr5 121677449 121677702 -30859557 + RMER17D LTR ERVK 210 459 -430 5 1513 1148 35 35 0 chr5 121677707 121677850 -30859409 - B1_Mus1 SINE Alu 0 148 1 5 1513 877 138 0 15 chr5 121677961 121678093 -30859166 - B3 SINE B2 -86 130 1 5 1513 229 213 78 47 chr5 121678221 121678285 -30858974 + RLTR9A2 LTR ERVK 232 297 -86 5 1513 290 322 8 48 chr5 121678866 121678990 -30858269 + Charlie4 DNA MER1_type 81 199 -1762 5 1513 220 214 54 0 chr5 121679217 121679273 -30857986 - BC1_Mm scRNA scRNA -71 81 23 5 1513 1067 44 88 0 chr5 121679704 121679840 -30857419 - B1_Mus1 SINE Alu 0 148 1 5 1513 971 201 53 10 chr5 121679844 121680050 -30857209 - B3 SINE B2 0 216 2 5 1513 665 265 0 0 chr5 121680427 121680563 -30856696 - B1F1 SINE Alu -2 147 12 5 1513 359 320 41 72 chr5 121680563 121680616 -30856643 - B4 SINE B4 -62 214 42 5 1513 851 232 10 35 chr5 121681065 121681262 -30855997 + ID_B1 SINE B4 1 192 -32 5 1513 736 254 23 27 chr5 121682004 121682223 -30855036 - ID_B1 SINE B4 -6 218 1 5 1513 235 322 21 43 chr5 121682281 121682375 -30854884 + RSINE1 SINE B4 12 103 -62 5 1513 541 275 19 63 chr5 121682453 121682659 -30854600 + B3A SINE B2 2 198 0 5 1513 767 184 179 0 chr5 121682660 121682837 -30854422 + MTD LTR MaLR 1 209 -210 5 1513 999 70 47 53 chr5 121682837 121682987 -30854272 + B2_Mm2 SINE B2 1 149 -46 5 1513 189 0 0 0 chr5 121683000 121683021 -30854238 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1513 519 172 32 11 chr5 121683032 121683126 -30854133 + B3 SINE B2 9 104 -112 5 1513 936 146 14 0 chr5 121683144 121683288 -30853971 - B1_Mm SINE Alu 0 147 2 5 1513 800 194 82 0 chr5 121683434 121683459 -30853800 - B2_Mm1t SINE B2 -8 185 159 5 1513 285 29 0 0 chr5 121683459 121683493 -30853766 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1513 965 132 0 0 chr5 121683493 121683637 -30853622 - B2_Mm2 SINE B2 -50 145 2 5 1513 575 306 89 20 chr5 121684125 121684328 -30852931 + ID_B1 SINE B4 8 224 0 5 1513 994 148 7 0 chr5 121684446 121684595 -30852664 + B1_Mur4 SINE Alu 1 150 0 5 1513 195 42 0 0 chr5 121684597 121684621 -30852638 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 5 1513 222 228 0 136 chr5 121684701 121684767 -30852492 - B4 SINE B4 -156 136 80 5 1513 227 103 0 25 chr5 121684798 121684830 -30852429 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 5 1513 786 161 58 14 chr5 121684830 121684969 -30852290 - B1_Mur4 SINE Alu -5 145 1 5 1513 227 103 0 25 chr5 121684969 121684976 -30852283 + (TTCC)n Simple_repeat Simple_repeat 2 8 0 5 1513 577 222 187 11 chr5 121684986 121685168 -30852091 - B3 SINE B2 -2 214 1 5 1513 513 47 0 0 chr5 121685178 121685242 -30852017 + (TCCC)n Simple_repeat Simple_repeat 3 66 0 5 1513 39 22 0 0 chr5 121685244 121685290 -30851969 + AT_rich Low_complexity Low_complexity 1 46 0 5 1513 1170 68 7 0 chr5 121685290 121685436 -30851823 - B1_Mus2 SINE Alu 0 147 1 5 1513 1362 63 17 22 chr5 121685437 121685616 -30851643 - B2_Mm2 SINE B2 -15 180 3 5 1513 1245 35 7 0 chr5 121685670 121685815 -30851444 + B1_Mm SINE Alu 2 147 0 5 1513 531 0 0 0 chr5 121685821 121685880 -30851379 + (GA)n Simple_repeat Simple_repeat 2 60 0 5 1513 300 27 0 0 chr5 121685895 121685932 -30851327 - B2_Mm2 SINE B2 -157 38 2 5 1513 474 18 0 0 chr5 121685945 121686000 -30851259 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 5 1513 851 40 165 24 chr5 121686000 121686121 -30851138 - B1_Mus2 SINE Alu -6 141 2 5 1513 369 0 0 0 chr5 121687528 121687569 -30849690 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1513 568 219 60 45 chr5 121687573 121687707 -30849552 - RSINE1 SINE B4 -19 146 11 5 1513 339 25 0 0 chr5 121687761 121687801 -30849458 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1513 1304 20 0 0 chr5 121687801 121687948 -30849311 - B1_Mus2 SINE Alu 0 147 1 5 1513 244 266 57 92 chr5 121687973 121688114 -30849145 + MER74B LTR ERVL 13 148 -474 5 1513 356 154 134 62 chr5 121688032 121688129 -30849130 - PB1D9 SINE Alu 0 120 17 5 1513 930 153 7 0 chr5 121688698 121688835 -30848424 - B1_Mur3 SINE Alu 0 149 12 5 1513 405 0 0 0 chr5 121688898 121688943 -30848316 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 5 1513 450 175 59 101 chr5 121688949 121689087 -30848172 + B3 SINE B2 48 198 0 5 1513 382 278 142 8 chr5 121689125 121689252 -30848007 - B4 SINE B4 0 292 149 5 1513 383 149 14 0 chr5 121689259 121689333 -30847926 + (TA)n Simple_repeat Simple_repeat 1 75 0 5 1513 725 253 66 31 chr5 121689663 121689859 -30847400 - B3 SINE B2 -3 213 11 5 1513 23 0 0 0 chr5 121690304 121690327 -30846932 + AT_rich Low_complexity Low_complexity 1 23 0 5 1513 470 208 93 19 chr5 121690329 121690437 -30846822 - B1_Mur2 SINE Alu -2 147 32 5 1513 276 229 0 32 chr5 121690436 121690499 -30846760 - PB1D10 SINE Alu -33 84 24 5 1513 180 0 0 0 chr5 121690745 121690765 -30846494 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 5 1513 684 204 17 0 chr5 121690765 121690941 -30846318 + CT-rich Low_complexity Low_complexity 2 180 0 5 1513 637 286 83 42 chr5 121690996 121691237 -30846022 + B4A SINE B4 42 292 0 5 1513 1000 141 0 0 chr5 121691423 121691565 -30845694 - B1_Mus1 SINE Alu -4 144 3 5 1513 939 92 235 55 chr5 121692081 121692264 -30844995 + B3 SINE B2 1 216 0 5 1513 743 282 78 47 chr5 121692279 121692578 -30844681 - B4 SINE B4 0 292 6 5 1513 219 167 0 0 chr5 121692583 121692625 -30844634 + CT-rich Low_complexity Low_complexity 2 43 0 5 1513 479 301 20 14 chr5 121692645 121692793 -30844466 - B1F1 SINE Alu 0 149 1 5 1513 427 255 196 0 chr5 121692883 121692985 -30844274 + RSINE1 SINE B4 2 123 -42 5 1513 593 253 182 0 chr5 121693055 121693225 -30844034 - B3 SINE B2 -14 202 2 5 1513 22 0 0 0 chr5 121693229 121693251 -30844008 + AT_rich Low_complexity Low_complexity 1 22 0 5 1513 1233 126 16 0 chr5 121693251 121693434 -30843825 - B2_Mm2 SINE B2 -8 187 2 5 1513 546 200 87 16 chr5 121693435 121693562 -30843697 - B1_Mur1 SINE Alu -13 136 1 5 1513 189 0 0 0 chr5 121693685 121693706 -30843553 + (TC)n Simple_repeat Simple_repeat 2 22 0 5 1513 883 274 23 30 chr5 121693753 121694105 -30843154 + B3 SINE B2 1 204 -12 6 1513 724 217 200 0 chr5 121694129 121694309 -30842950 + B3 SINE B2 1 216 0 6 1513 685 215 74 0 chr5 121694407 121694542 -30842717 - RSINE1 SINE B4 -17 148 4 6 1513 1210 42 0 14 chr5 121694863 121695009 -30842250 - B1_Mus2 SINE Alu -1 146 3 6 1513 390 243 57 28 chr5 121696089 121696195 -30841064 - MER20 DNA MER1_type -3 216 108 6 1513 285 75 0 0 chr5 121696614 121696654 -30840605 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1513 216 0 0 0 chr5 121696677 121696701 -30840558 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1513 687 210 28 0 chr5 121696773 121696916 -30840343 + B1_Mur1 SINE Alu 1 147 -2 6 1513 26 0 0 0 chr5 121697144 121697170 -30840089 + AT_rich Low_complexity Low_complexity 1 26 0 6 1513 1316 109 5 10 chr5 121697231 121697425 -30839834 - B2_Mm1t SINE B2 0 193 1 6 1513 327 277 95 11 chr5 121697637 121697732 -30839527 + ID_B1 SINE B4 95 197 -27 6 1513 255 125 0 0 chr5 121697740 121697780 -30839479 + (CAT)n Simple_repeat Simple_repeat 2 41 0 6 1513 492 304 0 17 chr5 121697802 121697919 -30839340 - ID_B1 SINE B4 -31 193 79 6 1513 266 343 0 0 chr5 121697951 121698021 -30839238 + ID2 SINE ID 1 70 -13 6 1513 609 214 0 33 chr5 121698389 121698510 -30838749 - B1_Mur1 SINE Alu 0 149 33 6 1513 229 279 59 0 chr5 121698756 121698824 -30838435 - ID2 SINE ID -10 73 2 6 1513 547 306 141 3 chr5 121698829 121699212 -30838047 + L1M4 LINE L1 5340 5775 -409 6 1513 1245 102 30 61 chr5 121699550 121699748 -30837511 - B2_Mm1t SINE B2 0 193 2 6 1513 314 345 90 20 chr5 121699920 121700121 -30837138 - L3 LINE CR1 -286 4203 3989 6 1513 1049 113 27 0 chr5 121700125 121700275 -30836984 + B2_Mm2 SINE B2 1 154 -41 6 1513 287 136 23 0 chr5 121700255 121700299 -30836960 - B2_Mm2 SINE B2 -149 46 2 6 1513 372 229 0 0 chr5 121701070 121701210 -30836049 + (TG)n Simple_repeat Simple_repeat 1 140 0 6 1513 548 293 0 72 chr5 121701210 121701405 -30835854 - B3A SINE B2 -16 182 2 6 1513 408 274 121 0 chr5 121701411 121701535 -30835724 - ID_B1 SINE B4 -1 223 85 6 1513 21 0 0 0 chr5 121702415 121702436 -30834823 + AT_rich Low_complexity Low_complexity 1 21 0 6 1513 27 29 0 0 chr5 121702479 121702513 -30834746 + AT_rich Low_complexity Low_complexity 1 34 0 6 1513 692 149 0 0 chr5 121702552 121702659 -30834600 + B3 SINE B2 1 107 -109 6 1513 249 108 0 0 chr5 121702884 121702921 -30834338 + (CATG)n Simple_repeat Simple_repeat 3 39 0 6 1513 238 207 172 0 chr5 121702931 121702989 -30834270 - ID4_ SINE ID -9 74 7 6 1513 396 0 0 0 chr5 121703114 121703158 -30834101 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1513 1043 128 0 0 chr5 121703186 121703327 -30833932 - B1_Mur4 SINE Alu -7 143 3 6 1513 713 288 38 21 chr5 121703400 121703687 -30833572 - B4A SINE B4 0 292 1 6 1513 211 77 24 49 chr5 121703687 121703728 -30833531 - PB1D7 SINE Alu -2 118 79 6 1513 21 36 0 0 chr5 121703848 121703876 -30833383 + AT_rich Low_complexity Low_complexity 1 28 0 6 1513 188 67 0 32 chr5 121704662 121704693 -30832566 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 6 1513 285 51 0 0 chr5 121704811 121704850 -30832409 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1513 219 273 18 0 chr5 121704853 121704908 -30832351 - RSINE1 SINE B4 -17 148 93 6 1513 991 118 28 0 chr5 121705354 121705498 -30831761 - B1_Mus1 SINE Alu 0 148 1 6 1513 284 200 0 13 chr5 121705971 121706047 -30831212 + CT-rich Low_complexity Low_complexity 2 76 0 6 1513 278 256 77 0 chr5 121706047 121706125 -30831134 - RMER15 LTR ERVL -121 454 371 6 1513 1836 238 102 31 chr5 121706132 121706652 -30830607 - Lx8 LINE L1 -248 7225 6669 6 1513 780 218 18 6 chr5 121706664 121706830 -30830429 - Lx8 LINE L1 -853 6620 6453 6 1513 1072 195 44 0 chr5 121707258 121707463 -30829796 - B3 SINE B2 0 216 3 6 1513 325 262 60 0 chr5 121709171 121709255 -30828004 + PB1D9 SINE Alu 4 92 -28 6 1513 465 19 0 0 chr5 121709313 121709367 -30827892 + (TA)n Simple_repeat Simple_repeat 1 54 0 6 1513 310 276 45 22 chr5 121709419 121709508 -30827751 - RSINE1 SINE B4 -2 163 73 6 1513 989 49 0 0 chr5 121710273 121710396 -30826863 - B1_Mus1 SINE Alu 0 148 26 6 1513 1230 21 0 0 chr5 121710784 121710921 -30826338 + B1_Mus2 SINE Alu 2 138 -9 6 1513 197 33 33 0 chr5 121710921 121710951 -30826308 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1513 1088 68 0 81 chr5 121711288 121711448 -30825811 + B1_Mus1 SINE Alu 2 148 0 6 1513 198 71 0 0 chr5 121711448 121711476 -30825783 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 6 1513 568 190 43 0 chr5 121711481 121711597 -30825662 + RSINE1 SINE B4 4 124 -41 6 1513 315 71 0 0 chr5 121711597 121711639 -30825620 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1513 376 333 26 32 chr5 121711775 121711930 -30825329 - MIRb SINE MIR 0 268 115 6 1513 1624 52 0 0 chr5 121712200 121712392 -30824867 - B2_Mm1t SINE B2 0 193 2 6 1513 26 0 0 0 chr5 121712438 121712464 -30824795 + AT_rich Low_complexity Low_complexity 1 26 0 6 1513 613 239 129 47 chr5 121712868 121713061 -30824198 - B3 SINE B2 -5 211 3 6 1513 436 228 247 32 chr5 121713065 121713219 -30824040 - B3A SINE B2 -3 195 9 6 1513 472 190 186 17 chr5 121713240 121713358 -30823901 - B1_Mus1 SINE Alu -3 145 8 6 1513 388 298 61 9 chr5 121713365 121713480 -30823779 - ID_B1 SINE B4 0 224 104 6 1513 264 246 8 50 chr5 121714129 121714193 -30823066 + T-rich Low_complexity Low_complexity 57 119 0 6 1513 1400 93 0 10 chr5 121714193 121714389 -30822870 - B2_Mm2 SINE B2 0 195 2 6 1513 264 246 8 50 chr5 121714389 121714444 -30822815 + T-rich Low_complexity Low_complexity 5 56 0 6 1513 409 224 39 48 chr5 121714454 121714557 -30822702 - RSINE1 SINE B4 -47 118 17 6 1513 504 209 22 202 chr5 121714613 121714752 -30822507 - B3A SINE B2 -3 195 81 6 1513 273 229 33 0 chr5 121714915 121714976 -30822283 - ID_B1 SINE B4 -30 194 132 6 1513 273 29 0 0 chr5 121715325 121715359 -30821900 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1513 1567 21 21 11 chr5 121715386 121715577 -30821682 - B2_Mm2 SINE B2 -1 194 2 6 1513 241 264 0 19 chr5 121715578 121715632 -30821627 - B1F1 SINE Alu -96 53 1 6 1513 473 237 126 8 chr5 121715651 121715770 -30821489 - ID_B1 SINE B4 -13 211 79 6 1513 507 211 8 50 chr5 121716074 121716194 -30821065 + B1_Mur4 SINE Alu 35 149 -1 6 1513 347 307 30 0 chr5 121717016 121717117 -30820142 + B1F SINE Alu 39 142 -7 6 1513 979 148 136 0 chr5 121717131 121717300 -30819959 + B3 SINE B2 1 192 -24 6 1513 343 246 72 24 chr5 121717342 121717467 -30819792 + HAL1 LINE L1 1360 1490 -1017 6 1513 268 215 138 0 chr5 121717797 121717862 -30819397 - PB1D10 SINE Alu -43 74 1 6 1513 245 276 210 29 chr5 121717870 121717888 -30819371 - B4A SINE B4 -46 246 194 6 1513 544 239 25 8 chr5 121717888 121717915 -30819344 - PB1D9 SINE Alu 0 120 94 6 1513 2004 165 102 16 chr5 121717915 121717956 -30819303 - ORR1B1 LTR MaLR 0 394 336 6 1513 1270 34 0 0 chr5 121717956 121718102 -30819157 + B1_Mm SINE Alu 2 147 0 6 1513 2004 165 102 16 chr5 121718102 121718423 -30818836 - ORR1B1 LTR MaLR -59 335 2 6 1513 544 239 25 8 chr5 121718423 121718513 -30818746 - PB1D9 SINE Alu -27 93 1 6 1513 228 333 31 94 chr5 121718515 121718582 -30818677 - MT2B LTR ERVL -356 245 97 6 1513 432 0 0 0 chr5 121719176 121719224 -30818035 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1513 793 163 258 0 chr5 121719224 121719402 -30817857 - MTD LTR MaLR 0 419 196 6 1513 21 36 0 0 chr5 121719422 121719450 -30817809 + AT_rich Low_complexity Low_complexity 1 28 0 6 1513 927 229 104 89 chr5 121719450 121719776 -30817483 - Lx6 LINE L1 -43 7417 7087 6 1513 476 175 298 0 chr5 121719853 121719967 -30817292 - B3A SINE B2 -47 151 4 6 1513 2527 23 13 0 chr5 121721459 121721762 -30815497 - ORR1A0 LTR MaLR -39 307 1 6 1513 3167 29 0 0 chr5 121721762 121722136 -30815123 - ORR1A0-int LTR MaLR 0 1792 1419 6 1513 348 304 192 0 chr5 121722443 121722568 -30814691 - RSINE1 SINE B4 -14 151 3 6 1513 479 250 73 32 chr5 121722839 121722963 -30814296 + ID_B1 SINE B4 96 224 0 6 1513 359 248 14 115 chr5 121723973 121724103 -30813156 + PB1D10 SINE Alu 1 116 -1 6 1513 1261 77 60 16 chr5 121724243 121724427 -30812832 + B2_Mm1t SINE B2 1 192 -1 6 1513 1007 83 8 0 chr5 121724432 121724565 -30812694 + B1_Mm SINE Alu 5 138 -9 6 1513 495 219 48 77 chr5 121724713 121724881 -30812378 + RSINE1 SINE B4 2 164 -1 6 1513 620 248 77 13 chr5 121725221 121725376 -30811883 - B3 SINE B2 -15 201 37 6 1513 333 0 0 0 chr5 121725397 121725434 -30811825 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1513 444 37 0 0 chr5 121725434 121725487 -30811772 + (GA)n Simple_repeat Simple_repeat 1 54 0 6 1513 567 213 0 9 chr5 121725610 121725719 -30811540 + PB1D7 SINE Alu 5 112 -8 6 1513 668 287 79 76 chr5 121725920 121726210 -30811049 + B4 SINE B4 1 291 -1 6 1513 21 82 0 0 chr5 121726252 121726301 -30810958 + AT_rich Low_complexity Low_complexity 1 49 0 6 1513 235 254 63 0 chr5 121726540 121726603 -30810656 + B3A SINE B2 84 150 -48 6 1513 288 247 123 0 chr5 121727025 121727106 -30810153 + PB1D9 SINE Alu 23 113 -7 6 1513 1134 200 5 19 chr5 121727346 121727560 -30809699 - B3 SINE B2 -5 211 1 7 1513 193 294 64 21 chr5 121727601 121727695 -30809564 - L3 LINE CR1 -4271 218 121 7 1513 590 195 92 15 chr5 121727883 121728013 -30809246 - ORR1D2 LTR MaLR 0 370 231 7 1513 1237 113 0 54 chr5 121728026 121728041 -30809218 - B2_Mm2 SINE B2 0 195 182 7 1513 698 203 34 40 chr5 121728041 121728190 -30809069 - B1_Mur4 SINE Alu 0 150 3 7 1513 1237 113 0 54 chr5 121728190 121728220 -30809039 - B2_Mm2 SINE B2 -14 181 161 7 1513 423 0 0 0 chr5 121728220 121728267 -30808992 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 7 1513 1237 113 0 54 chr5 121728267 121728425 -30808834 - B2_Mm2 SINE B2 -35 160 3 7 1513 624 256 88 12 chr5 121728425 121728593 -30808666 - ORR1D2 LTR MaLR -161 209 29 7 1513 423 276 85 16 chr5 121728808 121728937 -30808322 - PB1D9 SINE Alu -8 141 4 7 1513 1405 132 14 14 chr5 121729691 121729913 -30807346 - URR1A DNA MER1_type -4 222 1 7 1513 380 278 41 0 chr5 121730008 121730105 -30807154 + B1F SINE Alu 10 110 -39 7 1513 284 281 148 58 chr5 121730159 121730177 -30807082 - MIR SINE MIR -93 169 159 7 1513 1561 208 206 6 chr5 121730177 121730526 -30806733 - MTC LTR MaLR -2 419 1 7 1513 285 250 211 8 chr5 121730526 121730662 -30806597 - MIRb SINE MIR -104 158 1 7 1513 492 266 16 31 chr5 121732212 121732340 -30804919 + B1F SINE Alu 24 149 0 7 1513 228 296 0 0 chr5 121732369 121732413 -30804846 - B1_Mus2 SINE Alu -102 45 2 7 1513 1383 96 11 0 chr5 121732582 121732770 -30804489 + B2_Mm1a SINE B2 1 190 -3 7 1513 1303 103 38 0 chr5 121732776 121732960 -30804299 + B2_Mm2 SINE B2 4 194 -1 7 1513 565 190 10 0 chr5 121732990 121733090 -30804169 + B1_Mur1 SINE Alu 32 132 -17 7 1513 2072 81 84 39 chr5 121733308 121733641 -30803618 - RLTR10B2 LTR ERVK 0 365 18 7 1513 287 28 0 0 chr5 121733655 121733691 -30803568 - RLTR10B2 LTR ERVK -256 36 1 7 1513 285 89 0 0 chr5 121733693 121733738 -30803521 + (CCA)n Simple_repeat Simple_repeat 3 47 0 7 1513 370 257 39 132 chr5 121734133 121734283 -30802976 + L1M4b LINE L1 1458 1706 -5290 7 1513 1650 42 0 0 chr5 121734283 121734475 -30802784 + B2_Mm1t SINE B2 2 193 0 7 1513 370 231 39 146 chr5 121734475 121734578 -30802681 + L1M4b LINE L1 1528 1661 -5243 7 1513 556 170 40 0 chr5 121734578 121734678 -30802581 - ID_B1 SINE B4 -10 214 111 7 1513 365 311 82 0 chr5 121735672 121735807 -30801452 + MIR SINE MIR 9 154 -108 7 1513 204 67 0 0 chr5 121735896 121735926 -30801333 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 7 1513 1076 101 0 0 chr5 121735927 121736066 -30801193 - B1_Mus1 SINE Alu -9 139 1 7 1513 335 151 42 57 chr5 121736989 121737085 -30800174 - B1F1 SINE Alu -45 102 17 7 1513 363 78 0 0 chr5 121737085 121737136 -30800123 + (CCA)n Simple_repeat Simple_repeat 2 52 0 7 1513 585 271 29 127 chr5 121737471 121737589 -30799670 + B4 SINE B4 3 223 -69 7 1513 611 199 87 8 chr5 121737589 121737716 -30799543 + B1_Mur1 SINE Alu 11 147 -2 7 1513 463 337 85 0 chr5 121737802 121738001 -30799258 - B4 SINE B4 -76 216 1 7 1513 235 352 29 66 chr5 121737883 121738020 -30799239 - MLT1E1 LTR MaLR -331 323 192 7 1513 363 60 0 0 chr5 121738071 121738121 -30799138 + (T)n Simple_repeat Simple_repeat 1 50 0 7 1513 382 267 114 0 chr5 121738130 121738235 -30799024 - PB1D10 SINE Alu 0 117 1 7 1513 249 239 72 29 chr5 121738262 121738331 -30798928 - B1_Mur2 SINE Alu -7 142 71 7 1513 1638 42 0 0 chr5 121738336 121738527 -30798732 - B2_Mm1t SINE B2 -2 191 1 7 1513 1218 61 0 0 chr5 121738530 121738677 -30798582 - B1_Mus1 SINE Alu 0 148 2 7 1513 338 255 9 67 chr5 121739383 121739488 -30797771 - PB1D10 SINE Alu -16 101 3 7 1513 212 362 14 14 chr5 121739706 121739776 -30797483 - ID4_ SINE ID -13 70 1 7 1513 332 275 233 27 chr5 121739803 121739949 -30797310 - B3 SINE B2 0 216 41 7 1513 230 219 147 27 chr5 121739967 121740042 -30797217 - PB1 SINE Alu -12 115 32 7 1513 1201 175 40 5 chr5 121740109 121740310 -30796949 + B3 SINE B2 1 208 -8 7 1513 482 306 15 0 chr5 121740569 121740703 -30796556 + ID_B1 SINE B4 88 223 -1 7 1513 207 0 0 0 chr5 121740745 121740768 -30796491 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1513 220 196 0 42 chr5 121741094 121741142 -30796117 - B1F SINE Alu -91 58 13 7 1513 794 250 183 35 chr5 121741318 121741629 -30795630 - ORR1E LTR MaLR -2 357 1 7 1513 29 47 0 0 chr5 121743171 121743214 -30794045 + AT_rich Low_complexity Low_complexity 1 43 0 7 1513 493 257 35 0 chr5 121743418 121743529 -30793730 + B1F SINE Alu 12 126 -23 7 1513 367 250 92 33 chr5 121743529 121743649 -30793610 + RSINE1 SINE B4 3 129 -36 7 1513 490 262 98 18 chr5 121743658 121743821 -30793438 + B3 SINE B2 39 214 -2 7 1513 592 248 0 139 chr5 121743827 121743882 -30793377 + B1_Mur1 SINE Alu 1 54 -95 7 1513 1134 109 0 0 chr5 121743882 121744029 -30793230 + B1_Mus1 SINE Alu 2 148 0 7 1513 459 35 0 0 chr5 121744038 121744095 -30793164 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1513 592 248 0 139 chr5 121744095 121744202 -30793057 + B1_Mur1 SINE Alu 55 149 0 7 1513 546 154 0 32 chr5 121744534 121744614 -30792645 + B1_Mur4 SINE Alu 60 139 -11 7 1513 212 59 29 0 chr5 121744614 121744648 -30792611 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1513 546 154 0 32 chr5 121744648 121744661 -30792598 + B1_Mur4 SINE Alu 140 150 0 7 1513 227 291 28 46 chr5 121744677 121744785 -30792474 - Charlie25 DNA MER1_type -310 2214 2109 7 1513 180 152 0 0 chr5 121745725 121745758 -30791501 + CT-rich Low_complexity Low_complexity 4 36 0 7 1513 558 204 78 35 chr5 121745775 121745917 -30791342 - B1_Mur2 SINE Alu -1 148 1 7 1513 436 272 140 5 chr5 121746501 121746715 -30790544 + L1MB3 LINE L1 5938 6180 -3 7 1513 974 106 67 45 chr5 121747596 121747774 -30789485 - Lx2B LINE L1 -284 6716 6535 7 1513 1107 130 196 5 chr5 121747775 121747999 -30789260 + Lx2B LINE L1 6732 6998 -2 7 1513 254 312 43 52 chr5 121748437 121748552 -30788707 - PB1D9 SINE Alu -2 118 5 7 1513 1254 34 0 0 chr5 121748621 121748767 -30788492 - B1_Mus2 SINE Alu 0 147 2 7 1513 487 279 18 55 chr5 121750927 121751090 -30786169 + RSINE1 SINE B4 8 164 -1 7 1513 365 173 53 0 chr5 121752457 121752532 -30784727 + PB1D9 SINE Alu 41 119 -1 7 1513 228 230 117 39 chr5 121753693 121753770 -30783489 - RNLTR23 LTR ERVK -356 286 204 7 1513 231 267 52 26 chr5 121754510 121754587 -30782672 + ID4 SINE ID 3 81 -2 7 1513 473 258 124 8 chr5 121755087 121755208 -30782051 - RSINE1 SINE B4 -21 144 10 7 1513 24 0 0 0 chr5 121755313 121755337 -30781922 + GC_rich Low_complexity Low_complexity 1 24 0 7 1513 362 164 14 0 chr5 121755350 121755423 -30781836 - Lx5 LINE L1 -11 7039 6966 7 1513 608 173 151 48 chr5 121756355 121756501 -30780758 + RSINE1 SINE B4 5 165 0 7 1513 221 289 0 0 chr5 121756680 121756732 -30780527 + PB1D10 SINE Alu 52 103 -14 7 1513 225 292 56 0 chr5 121756744 121756816 -30780443 + ID2 SINE ID 5 80 -3 7 1513 294 305 0 24 chr5 121757855 121757939 -30779320 - ID4 SINE ID 0 83 2 7 1513 204 281 66 58 chr5 121758174 121758295 -30778964 + L4 LINE RTE 1715 1836 -193 7 1513 702 101 9 52 chr5 121759011 121759126 -30778133 - B1_Mus1 SINE Alu -34 114 5 7 1513 222 62 0 0 chr5 121759409 121759441 -30777818 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1513 1245 35 0 0 chr5 121759442 121759583 -30777676 - B1_Mus2 SINE Alu -6 141 1 7 1513 1293 77 66 0 chr5 121759610 121759792 -30777467 - B2_Mm2 SINE B2 0 195 2 7 1513 278 320 62 23 chr5 121760152 121760280 -30776979 - MER103 DNA DNA -3 163 31 7 1513 310 293 0 0 chr5 121760809 121760884 -30776375 + B3A SINE B2 1 75 -123 7 1513 545 198 0 0 chr5 121761243 121761339 -30775920 + B3 SINE B2 16 111 -105 7 1513 945 248 5 0 chr5 121762095 121762297 -30774962 + B3 SINE B2 2 204 -12 7 1513 992 137 7 0 chr5 121762321 121762467 -30774792 - B1_Mus1 SINE Alu -1 147 1 7 1513 1253 48 0 0 chr5 121762484 121762630 -30774629 - B1_Mus2 SINE Alu 0 147 2 7 1513 746 209 35 14 chr5 121762710 121762851 -30774408 - B1_Mur1 SINE Alu 0 149 6 7 1513 602 295 32 0 chr5 121762915 121763071 -30774188 - RSINE1 SINE B4 -2 163 3 7 1513 788 215 63 26 chr5 121763158 121763349 -30773910 + B3A SINE B2 1 198 0 7 1514 707 89 42 59 chr5 121766244 121766363 -30770896 - B1_Mur4 SINE Alu 0 150 34 7 1514 345 265 64 170 chr5 121766251 121766392 -30770867 - B4 SINE B4 -69 223 98 7 1514 835 173 213 6 chr5 121766393 121766567 -30770692 + B3 SINE B2 1 210 -6 7 1514 243 62 0 0 chr5 121766593 121766625 -30770634 + B1_Mus1 SINE Alu 1 32 -116 7 1514 243 0 0 0 chr5 121766637 121766664 -30770595 + (CAAAG)n Simple_repeat Simple_repeat 2 28 0 7 1514 23 33 0 0 chr5 121766692 121766722 -30770537 + AT_rich Low_complexity Low_complexity 1 30 0 7 1514 237 65 0 0 chr5 121766727 121766758 -30770501 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 7 1514 987 108 0 0 chr5 121766761 121766890 -30770369 - B1_Mus1 SINE Alu -18 130 2 7 1514 647 320 6 0 chr5 121766940 121767096 -30770163 + RSINE1 SINE B4 6 162 -3 7 1514 730 261 52 37 chr5 121767433 121767624 -30769635 - ID_B1 SINE B4 -26 198 5 7 1514 618 282 121 15 chr5 121767748 121767946 -30769313 + ID_B1 SINE B4 2 220 -4 7 1514 384 193 56 11 chr5 121768149 121768238 -30769021 + PB1D9 SINE Alu 9 101 -19 7 1514 254 224 76 38 chr5 121768167 121768246 -30769013 - YREP_Mm Unknown Unknown -1523 289 208 7 1514 465 19 0 0 chr5 121769736 121769790 -30767469 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1514 796 132 49 8 chr5 121769791 121769913 -30767346 - B1_Mus2 SINE Alu -19 128 2 7 1514 22 0 0 0 chr5 121770481 121770503 -30766756 + AT_rich Low_complexity Low_complexity 1 22 0 7 1514 1052 93 0 54 chr5 121770505 121770652 -30766607 - B1_Mm SINE Alu -7 140 2 8 1514 227 98 24 0 chr5 121770976 121771003 -30766256 + (TC)n Simple_repeat Simple_repeat 1 27 0 8 1514 1133 88 0 20 chr5 121771003 121771153 -30766106 - B1_Mus1 SINE Alu 0 148 2 8 1514 227 98 24 0 chr5 121771153 121771166 -30766093 + (TC)n Simple_repeat Simple_repeat 1 14 0 8 1514 1106 202 34 0 chr5 121771174 121771382 -30765877 - B3 SINE B2 0 216 2 8 1514 1293 87 49 5 chr5 121771883 121772068 -30765191 - B2_Mm2 SINE B2 -1 194 2 8 1514 243 406 79 22 chr5 121773463 121773740 -30763519 - MER2 DNA MER2_type -1 344 52 8 1514 322 274 133 31 chr5 121774314 121774442 -30762817 - B1_Mur1 SINE Alu -6 143 3 8 1514 431 285 36 7 chr5 121774493 121774631 -30762628 + B1F SINE Alu 3 144 -5 8 1514 1320 87 49 0 chr5 121774640 121774825 -30762434 + B2_Mm2 SINE B2 1 194 -1 8 1514 477 293 120 0 chr5 121775623 121775773 -30761486 + B4A SINE B4 88 255 -37 8 1514 261 198 102 23 chr5 121775897 121775985 -30761274 + L1M4 LINE L1 5695 5789 -395 8 1514 2851 16 0 0 chr5 121776937 121777296 -30759963 + L1Md_F2 LINE L1 6250 6582 0 8 1514 726 12 0 0 chr5 121777411 121777494 -30759765 + (TTCCC)n Simple_repeat Simple_repeat 2 84 0 8 1514 180 77 0 0 chr5 121777513 121777539 -30759720 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 8 1514 1041 135 0 7 chr5 121777587 121777736 -30759523 + B1_Mur3 SINE Alu 2 149 0 8 1514 570 186 80 8 chr5 121778535 121778660 -30758599 + B1_Mur1 SINE Alu 2 135 -14 8 1514 204 213 0 0 chr5 121779977 121780024 -30757235 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1514 402 85 0 0 chr5 121780029 121780088 -30757171 + (CATA)n Simple_repeat Simple_repeat 4 62 0 8 1514 288 0 0 0 chr5 121780090 121780122 -30757137 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 8 1514 2644 87 43 60 chr5 121780127 121780545 -30756714 - IAPLTR2a LTR ERVK 0 411 1 8 1514 327 25 0 0 chr5 121780545 121780585 -30756674 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1514 303 28 0 0 chr5 121780585 121780620 -30756639 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1514 239 324 120 21 chr5 121780851 121780993 -30756266 - L2b LINE L2 -1 3374 3219 8 1514 458 254 26 9 chr5 121781280 121781395 -30755864 + B3 SINE B2 100 216 0 8 1514 294 135 0 103 chr5 121781394 121781452 -30755807 + PB1D10 SINE Alu 53 104 -13 8 1514 312 262 20 19 chr5 121782287 121782397 -30754862 + PB1D10 SINE Alu 11 123 -26 8 1514 323 227 27 0 chr5 121782401 121782743 -30754516 + (TAGA)n Simple_repeat Simple_repeat 1 351 0 8 1514 329 158 0 26 chr5 121782744 121782822 -30754437 + (CATA)n Simple_repeat Simple_repeat 3 78 0 8 1514 297 276 92 0 chr5 121782822 121782898 -30754361 + ID4_ SINE ID 1 83 0 8 1514 201 156 0 0 chr5 121783025 121783057 -30754202 + (ATG)n Simple_repeat Simple_repeat 3 34 0 8 1514 311 183 70 0 chr5 121783801 121783872 -30753387 + PB1D10 SINE Alu 41 116 -1 8 1514 271 270 16 0 chr5 121784744 121784807 -30752452 + ID_B1 SINE B4 148 211 -13 8 1514 869 181 21 0 chr5 121785105 121785249 -30752010 + B1_Mur3 SINE Alu 2 148 -1 8 1514 680 187 36 0 chr5 121785253 121785392 -30751867 + B1_Mus1 SINE Alu 5 148 0 8 1514 1452 293 63 89 chr5 121785565 121786460 -30750799 - L1MB7 LINE L1 -38 6146 5276 8 1514 602 259 32 69 chr5 121786932 121787148 -30750111 + B3 SINE B2 3 210 -6 8 1514 1542 72 0 5 chr5 121787821 121788016 -30749243 - B2_Mm2 SINE B2 0 195 2 8 1514 1049 95 0 33 chr5 121788032 121788185 -30749074 - B1_Mus1 SINE Alu 0 148 1 8 1514 460 257 182 6 chr5 121788253 121788429 -30748830 + B3 SINE B2 7 213 -3 8 1514 529 270 186 44 chr5 121788454 121788702 -30748557 + B4A SINE B4 6 288 -4 8 1514 410 275 0 0 chr5 121788760 121788851 -30748408 + PB1D10 SINE Alu 9 99 -18 8 1514 366 23 0 0 chr5 121788920 121788963 -30748296 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1514 686 286 6 6 chr5 121788984 121789163 -30748096 + B3A SINE B2 9 187 -11 8 1514 246 197 26 0 chr5 121789163 121789231 -30748028 + B1F1 SINE Alu 40 142 -7 8 1514 286 215 0 86 chr5 121789953 121790034 -30747225 + PB1D9 SINE Alu 13 86 -34 8 1514 282 253 20 99 chr5 121790367 121790468 -30746791 - PB1D9 SINE Alu -27 93 1 8 1514 743 147 86 22 chr5 121790553 121790692 -30746567 + B1_Mur3 SINE Alu 2 149 0 8 1514 1283 156 28 0 chr5 121791080 121791298 -30745961 + URR1A DNA MER1_type 1 224 -2 8 1514 230 295 66 9 chr5 121791546 121791652 -30745607 - L1M4 LINE L1 -415 5763 5652 8 1514 655 338 67 12 chr5 121792214 121792454 -30744805 + B4 SINE B4 40 292 0 8 1514 635 178 8 0 chr5 121794244 121794362 -30742897 - B1_Mur4 SINE Alu -23 127 9 8 1514 288 77 0 0 chr5 121795054 121795093 -30742166 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1514 521 210 0 29 chr5 121795161 121795264 -30741995 + B1_Mur1 SINE Alu 41 140 -9 8 1514 292 340 103 5 chr5 121795397 121795610 -30741649 + L1ME2z LINE L1 6143 6376 -68 8 1514 21 0 0 0 chr5 121795732 121795753 -30741506 + AT_rich Low_complexity Low_complexity 1 21 0 8 1514 318 293 0 12 chr5 121796322 121796405 -30740854 + ID SINE ID 1 82 -142 8 1514 1156 76 7 0 chr5 121796532 121796677 -30740582 - B1_Mus2 SINE Alu 0 147 2 8 1514 500 259 9 26 chr5 121796684 121796799 -30740460 - ID_B1 SINE B4 -32 192 80 8 1514 680 251 241 8 chr5 121796819 121797056 -30740203 - B4A SINE B4 0 292 1 8 1514 459 264 37 19 chr5 121797057 121797219 -30740040 - MER113 DNA MER1_type -109 412 248 8 1514 817 258 45 0 chr5 121797243 121797441 -30739818 + B3 SINE B2 10 216 0 8 1514 1352 100 11 0 chr5 121797445 121797635 -30739624 + B2_Mm1t SINE B2 2 193 0 8 1514 33 0 0 0 chr5 121797644 121797677 -30739582 + AT_rich Low_complexity Low_complexity 1 33 0 8 1514 371 219 51 58 chr5 121797681 121797876 -30739383 + B3 SINE B2 2 194 -1 8 1514 200 224 20 34 chr5 121797906 121798055 -30739204 + CT-rich Low_complexity Low_complexity 1 146 0 8 1514 1576 37 16 5 chr5 121800692 121800882 -30736377 - B2_Mm2 SINE B2 -2 193 2 8 1514 726 258 0 24 chr5 121800908 121801075 -30736184 - RSINE1 SINE B4 0 165 3 8 1514 523 300 0 8 chr5 121801084 121801215 -30736044 - ID_B1 SINE B4 -8 216 87 8 1514 441 220 17 52 chr5 121801560 121801669 -30735590 + B2_Mm2 SINE B2 1 105 -90 8 1514 370 253 0 44 chr5 121801669 121801760 -30735499 + RSINE1 SINE B4 3 89 -76 8 1514 397 307 0 10 chr5 121802206 121802308 -30734951 - PB1D10 SINE Alu -15 102 2 8 1514 953 234 24 5 chr5 121802486 121802692 -30734567 + B3 SINE B2 6 215 -1 8 1514 201 161 0 0 chr5 121802733 121802749 -30734510 + A-rich Low_complexity Low_complexity 1 16 0 8 1514 1248 48 0 7 chr5 121802749 121802897 -30734362 + B1_Mus2 SINE Alu 1 147 0 8 1514 201 161 0 0 chr5 121802897 121802936 -30734323 + A-rich Low_complexity Low_complexity 17 55 0 8 1514 509 273 78 0 chr5 121804428 121804556 -30732703 + B1_Mur1 SINE Alu 1 138 -11 8 1514 261 119 0 0 chr5 121804557 121804599 -30732660 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 8 1514 408 240 0 0 chr5 121804608 121804683 -30732576 + ID4 SINE ID 2 76 -7 8 1514 552 126 0 0 chr5 121804683 121804770 -30732489 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 8 1514 239 296 92 0 chr5 121804990 121805088 -30732171 - PB1D9 SINE Alu -13 107 1 8 1514 732 253 12 0 chr5 121806852 121807014 -30730245 + U1 snRNA snRNA 1 164 -1 8 1514 265 266 128 0 chr5 121808888 121808982 -30728277 + L1MC4a LINE L1 7777 7882 0 8 1514 334 51 2 11 chr5 121809529 121809591 -30727668 + B1_Mm SINE Alu 40 134 -15 8 1514 270 0 0 0 chr5 121809601 121809631 -30727628 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 8 1514 316 343 28 42 chr5 121810896 121811039 -30726220 + B1F SINE Alu 1 141 -8 8 1514 979 204 117 4 chr5 121813326 121813557 -30723702 - ORR1C2 LTR MaLR -15 369 113 8 1514 1022 171 11 178 chr5 121814043 121814131 -30723128 + URR1B DNA MER1_type 1 86 -139 8 1514 629 83 339 9 chr5 121814131 121814240 -30723019 + B1_Mus2 SINE Alu 1 145 -2 8 1514 1022 171 11 178 chr5 121814240 121814421 -30722838 + URR1B DNA MER1_type 87 225 0 8 1514 728 211 15 0 chr5 121815412 121815545 -30721714 - ID_B1 SINE B4 -7 217 83 8 1514 302 242 106 0 chr5 121815559 121815625 -30721634 - tRNA-Asp-GAY tRNA tRNA 0 75 3 8 1514 1228 28 0 14 chr5 121815708 121815854 -30721405 + B1_Mm SINE Alu 2 145 -2 8 1514 507 241 60 0 chr5 121815871 121815987 -30721272 + RSINE1 SINE B4 43 165 0 8 1514 818 153 0 0 chr5 121816034 121816165 -30721094 - B1_Mus1 SINE Alu -12 136 6 8 1514 217 270 72 82 chr5 121816205 121816302 -30720957 + B1_Mm SINE Alu 1 96 -51 8 1514 189 94 0 0 chr5 121817185 121817217 -30720042 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 8 1514 22 0 0 0 chr5 121818443 121818465 -30718794 + AT_rich Low_complexity Low_complexity 1 22 0 8 1514 415 42 82 27 chr5 121819408 121819481 -30717778 + B1_Mur4 SINE Alu 74 150 0 8 1514 227 81 54 0 chr5 121820121 121820158 -30717101 + ID_B1 SINE B4 175 213 -11 8 1514 1274 41 0 0 chr5 121820533 121820680 -30716579 + B1_Mus2 SINE Alu 1 147 0 8 1514 365 234 4 0 chr5 121821609 121821692 -30715567 + PB1D10 SINE Alu 19 104 -16 9 1514 180 0 0 0 chr5 121822322 121822342 -30714917 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 9 1514 225 262 0 76 chr5 121822796 121822862 -30714397 + ID2 SINE ID 23 83 0 9 1514 249 282 28 0 chr5 121823015 121823086 -30714173 - B4 SINE B4 -219 73 1 9 1514 1125 82 12 6 chr5 121824080 121824252 -30713007 + (GAGAA)n Simple_repeat Simple_repeat 4 176 0 9 1514 855 0 0 0 chr5 121824252 121824346 -30712913 + (GGAAA)n Simple_repeat Simple_repeat 1 95 0 9 1514 380 200 47 0 chr5 121826108 121826193 -30711066 + PB1D10 SINE Alu 3 91 -26 9 1514 839 37 0 9 chr5 121826203 121826311 -30710948 + (GAAA)n Simple_repeat Simple_repeat 3 109 0 9 1514 464 238 12 26 chr5 121826454 121826582 -30710677 + PB1D9 SINE Alu 13 150 0 9 1514 1152 82 0 7 chr5 121826652 121826800 -30710459 + B1_Mus1 SINE Alu 1 147 -1 9 1514 273 57 0 0 chr5 121826800 121826835 -30710424 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 9 1514 656 99 143 118 chr5 121826883 121826940 -30710319 + B2_Mm1t SINE B2 28 85 -108 9 1514 1699 31 0 0 chr5 121826940 121827132 -30710127 + B2_Mm1a SINE B2 1 192 -1 9 1514 656 99 143 118 chr5 121827132 121827235 -30710024 + B2_Mm1t SINE B2 86 192 -1 9 1514 361 197 53 0 chr5 121827242 121827318 -30709941 - PB1D9 SINE Alu -5 115 36 9 1514 237 155 207 0 chr5 121827392 121827450 -30709809 - B2_Mm1t SINE B2 -122 71 2 9 1514 842 266 44 0 chr5 121827509 121827712 -30709547 + B3 SINE B2 1 212 -4 9 1514 442 258 124 8 chr5 121829042 121829163 -30708096 + RSINE1 SINE B4 2 136 -29 9 1514 342 302 101 0 chr5 121829814 121829943 -30707316 - ID_B1 SINE B4 -2 222 81 9 1514 296 286 0 67 chr5 121829946 121830036 -30707223 - PB1D7 SINE Alu -8 112 29 9 1514 226 197 125 50 chr5 121830077 121830157 -30707102 - PB1D10 SINE Alu -3 114 29 9 1514 353 306 23 83 chr5 121830245 121830377 -30706882 + RSINE1 SINE B4 42 165 0 9 1514 556 179 205 0 chr5 121830515 121830632 -30706627 + B1_Mur3 SINE Alu 1 141 -8 9 1514 538 204 8 50 chr5 121830688 121830807 -30706452 - PB1D9 SINE Alu -6 114 1 9 1514 1007 177 14 79 chr5 121830844 121831059 -30706200 - B3 SINE B2 -15 201 1 9 1514 732 244 34 11 chr5 121831103 121831281 -30705978 - B3A SINE B2 -16 182 1 9 1514 342 243 25 2 chr5 121831811 121831916 -30705343 + B4A SINE B4 17 123 -169 9 1514 901 158 129 0 chr5 121832030 121832201 -30705058 + B2_Mm2 SINE B2 3 195 0 9 1514 276 248 29 62 chr5 121832335 121832489 -30704770 + B1F SINE Alu 3 147 -2 9 1514 378 315 17 83 chr5 121832697 121832877 -30704382 + ID_B1 SINE B4 49 216 -8 9 1514 563 214 0 53 chr5 121833143 121833276 -30703983 + B1_Mur4 SINE Alu 4 129 -21 9 1514 641 159 163 23 chr5 121833431 121833560 -30703699 - B1F2 SINE Alu -2 147 1 9 1514 927 215 74 15 chr5 121833582 121833785 -30703474 - B3 SINE B2 0 216 2 9 1514 258 170 48 96 chr5 121834211 121834315 -30702944 - L1MC4 LINE L1 0 8042 7944 9 1514 21 0 0 0 chr5 121834330 121834351 -30702908 + AT_rich Low_complexity Low_complexity 1 21 0 9 1514 306 247 10 70 chr5 121834571 121834671 -30702588 - L1MC4 LINE L1 -489 7553 7460 9 1514 723 262 29 6 chr5 121834701 121834874 -30702385 + ID_B1 SINE B4 48 224 0 9 1514 213 39 0 0 chr5 121835495 121835521 -30701738 + (CCCCG)n Simple_repeat Simple_repeat 2 27 0 9 1514 21 0 0 0 chr5 121836038 121836059 -30701200 + GC_rich Low_complexity Low_complexity 1 21 0 9 1514 488 211 66 58 chr5 121836106 121836227 -30701032 + B3A SINE B2 1 122 -76 9 1514 310 91 36 0 chr5 121836236 121836291 -30700968 + (CAT)n Simple_repeat Simple_repeat 2 58 0 9 1514 325 270 14 93 chr5 121836307 121836446 -30700813 - ID_B1 SINE B4 -15 209 82 9 1514 420 247 22 135 chr5 121836838 121836893 -30700366 + MT2B LTR ERVL 107 141 -460 9 1514 874 123 0 68 chr5 121836893 121837041 -30700218 + B1_Mur3 SINE Alu 2 139 -10 9 1514 1439 89 11 0 chr5 121837682 121837873 -30699386 + B2_Mm2 SINE B2 3 195 0 9 1514 622 204 79 14 chr5 121837906 121838045 -30699214 - B1_Mur2 SINE Alu -1 148 1 9 1514 270 352 21 52 chr5 121838134 121838230 -30699029 - RSINE1 SINE B4 -62 103 11 9 1514 23 0 0 0 chr5 121838395 121838418 -30698841 + AT_rich Low_complexity Low_complexity 1 23 0 9 1514 688 196 75 0 chr5 121838426 121838559 -30698700 + B1_Mur4 SINE Alu 1 143 -7 9 1514 222 37 0 0 chr5 121838560 121838587 -30698672 + (TAA)n Simple_repeat Simple_repeat 3 29 0 9 1514 225 235 92 23 chr5 121838692 121838779 -30698480 - L1MB7 LINE L1 -218 5966 5874 9 1514 310 226 17 9 chr5 121838779 121838895 -30698364 + (TCTA)n Simple_repeat Simple_repeat 2 118 0 9 1514 631 209 98 1 chr5 121838897 121839037 -30698222 - ID_B1 SINE B4 -142 150 1 9 1514 351 65 0 0 chr5 121839643 121839689 -30697570 + (TC)n Simple_repeat Simple_repeat 2 47 0 9 1514 712 227 15 0 chr5 121839717 121839849 -30697410 + ID_B1 SINE B4 83 216 -8 9 1514 1367 89 11 5 chr5 121839859 121840050 -30697209 + B2_Mm2 SINE B2 2 193 -2 9 1514 312 171 0 138 chr5 121840081 121840165 -30697094 + PB1D9 SINE Alu 57 122 -5 9 1514 270 203 13 92 chr5 121840276 121840352 -30696907 + PB1D9 SINE Alu 50 119 -1 9 1514 1432 181 192 14 chr5 121840429 121840777 -30696482 + MTD LTR MaLR 10 419 0 9 1514 725 270 76 10 chr5 121840806 121841004 -30696255 + B3 SINE B2 6 216 0 9 1514 1254 41 0 7 chr5 121841013 121841161 -30696098 + B1_Mus2 SINE Alu 1 147 0 9 1514 1069 139 26 31 chr5 121841309 121841502 -30695757 - B2_Mm2 SINE B2 -2 193 2 9 1514 1686 26 0 0 chr5 121841514 121841704 -30695555 - B2_Mm1t SINE B2 -2 191 2 9 1514 207 0 0 0 chr5 121841710 121841733 -30695526 + (TTTTTG)n Simple_repeat Simple_repeat 6 28 0 9 1514 557 175 18 0 chr5 121841733 121841834 -30695425 - B1_Mur3 SINE Alu 0 120 7 9 1514 237 234 123 26 chr5 121841850 121841964 -30695295 + L1M5 LINE L1 5450 5574 -550 9 1514 276 267 9 143 chr5 121842001 121842106 -30695153 + ID_B1 SINE B4 108 198 -26 9 1514 576 221 86 29 chr5 121842181 121842321 -30694938 + B1_Mur2 SINE Alu 2 149 0 9 1514 658 275 13 80 chr5 121842450 121842687 -30694572 + B4 SINE B4 29 249 -43 9 1514 225 0 0 0 chr5 121843019 121843044 -30694215 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1514 693 160 104 0 chr5 121843069 121843194 -30694065 + B3 SINE B2 1 138 -78 9 1514 1418 76 5 16 chr5 121843974 121844162 -30693097 - B2_Mm1t SINE B2 -7 186 1 9 1514 781 146 73 0 chr5 121844188 121844325 -30692934 - B1_Mus2 SINE Alu 0 147 1 9 1514 310 305 0 0 chr5 121844524 121844606 -30692653 - ID_B1 SINE B4 0 224 143 9 1514 469 261 15 135 chr5 121844614 121844747 -30692512 - B3 SINE B2 -30 186 65 9 1514 358 222 71 71 chr5 121844744 121844870 -30692389 + RLTR20C LTR ERVK 72 197 -337 9 1514 1021 80 0 0 chr5 121844822 121844959 -30692300 + B1_Mus1 SINE Alu 12 148 0 9 1514 307 289 0 40 chr5 121845080 121845181 -30692078 + PB1 SINE Alu 1 97 -30 9 1514 277 291 12 25 chr5 121845221 121845302 -30691957 + ID4_ SINE ID 4 83 0 9 1514 271 370 11 0 chr5 121845329 121845421 -30691838 + PB1D10 SINE Alu 7 99 -18 9 1514 1393 75 27 5 chr5 121845440 121845628 -30691631 + B2_Mm1a SINE B2 2 193 0 9 1514 716 285 34 0 chr5 121845628 121845833 -30691426 + B3 SINE B2 1 214 -2 9 1514 457 298 114 47 chr5 121845871 121846107 -30691152 + B4A SINE B4 41 292 0 9 1514 628 201 112 53 chr5 121846251 121846403 -30690856 - B3 SINE B2 -3 213 53 9 1514 1172 51 0 0 chr5 121846443 121846580 -30690679 - B1_Mus2 SINE Alu -6 141 5 9 1514 787 144 247 32 chr5 121846600 121846786 -30690473 - URR1A DNA MER1_type 0 226 1 9 1514 361 217 95 48 chr5 121846882 121847008 -30690251 - L1MA6 LINE L1 -4 6296 6165 9 1514 380 247 52 41 chr5 121847015 121847112 -30690147 - PB1D10 SINE Alu -6 111 14 9 1514 781 97 17 26 chr5 121847300 121847416 -30689843 - B1_Mur2 SINE Alu -5 144 30 9 1514 234 0 0 0 chr5 121847813 121847839 -30689420 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1514 23 68 0 0 chr5 121848159 121848203 -30689056 + GC_rich Low_complexity Low_complexity 1 44 0 9 1514 198 256 143 24 chr5 121848487 121848571 -30688688 - MIR3 SINE MIR -29 179 86 9 1514 203 0 0 36 chr5 121848961 121848989 -30688270 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 9 1514 189 0 0 0 chr5 121849077 121849098 -30688161 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1514 496 220 76 30 chr5 121849210 121849341 -30687918 - B3 SINE B2 -13 203 67 9 1514 487 191 56 19 chr5 121849341 121849448 -30687811 - PB1D9 SINE Alu -9 111 1 9 1514 1053 85 0 60 chr5 121849462 121849612 -30687647 - B1_Mus1 SINE Alu -5 143 3 9 1514 384 251 35 11 chr5 121849617 121849739 -30687520 - B1F2 SINE Alu 0 117 2 9 1514 452 239 41 99 chr5 121849811 121849983 -30687276 - RSINE1 SINE B4 -1 164 3 9 1514 288 0 0 0 chr5 121850101 121850133 -30687126 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1514 394 240 40 56 chr5 121850996 121851124 -30686135 - B1F SINE Alu -10 140 11 9 1514 508 281 24 24 chr5 121851227 121851391 -30685868 + RSINE1 SINE B4 2 165 0 9 1514 840 255 101 15 chr5 121851702 121851969 -30685290 - B4 SINE B4 -1 291 2 1 1514 707 206 15 0 chr5 121852014 121852145 -30685114 + B1_Mus1 SINE Alu 1 133 -15 1 1514 687 147 9 0 chr5 121852398 121852507 -30684752 - B1_Mur3 SINE Alu -39 110 1 1 1514 255 31 0 0 chr5 121852516 121852548 -30684711 + (CTTA)n Simple_repeat Simple_repeat 2 33 0 1 1514 870 42 200 0 chr5 121852550 121852670 -30684589 - B1_Mus2 SINE Alu -3 144 1 1 1514 1030 83 158 18 chr5 121852670 121852840 -30684419 - B2_Mm2 SINE B2 0 195 1 1 1514 2016 180 133 99 chr5 121852840 121853507 -30683752 - RMER6C LTR ERVK 0 690 1 1 1514 420 298 8 40 chr5 121853563 121853689 -30683570 - ID_B1 SINE B4 -2 222 101 1 1514 725 239 70 0 chr5 121853818 121854019 -30683240 - B3 SINE B2 -1 215 1 1 1514 313 229 0 0 chr5 121854163 121854224 -30683035 - PB1D10 SINE Alu -56 61 1 1 1514 356 212 62 0 chr5 121854245 121854325 -30682934 - B1_Mur1 SINE Alu -1 148 64 1 1514 671 210 24 0 chr5 121854384 121854508 -30682751 + B1_Mur1 SINE Alu 23 149 0 1 1514 2045 186 24 91 chr5 121855139 121855690 -30681569 + RLTR31A_Mm LTR ERVK 1 514 -70 1 1514 389 287 77 0 chr5 121856135 121856278 -30680981 - RSINE1 SINE B4 -10 155 2 1 1514 785 181 41 88 chr5 121856308 121856502 -30680757 + B2_Mm2 SINE B2 1 185 -10 1 1514 1103 164 38 43 chr5 121856579 121856789 -30680470 + B3 SINE B2 1 209 -7 1 1514 443 217 54 0 chr5 121856843 121856935 -30680324 - B3A SINE B2 -99 99 3 1 1514 231 214 0 0 chr5 121857048 121857090 -30680169 - PB1D7 SINE Alu -78 42 1 1 1514 377 292 98 15 chr5 121857339 121857471 -30679788 - B1_Mur2 SINE Alu -6 143 1 1 1514 1086 83 7 14 chr5 121857581 121857728 -30679531 + B1_Mus1 SINE Alu 3 148 0 1 1514 563 254 70 65 chr5 121857743 121857928 -30679331 - B3A SINE B2 -10 188 3 1 1514 444 238 97 32 chr5 121857932 121858070 -30679189 - B4 SINE B4 -60 232 86 1 1514 989 138 92 0 chr5 121858844 121859018 -30678241 + URR1A DNA MER1_type 37 226 0 1 1514 336 24 0 0 chr5 121859270 121859311 -30677948 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1514 225 0 0 0 chr5 121859483 121859508 -30677751 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 1 1514 1237 55 0 0 chr5 121859675 121859821 -30677438 - B1_Mus2 SINE Alu 0 147 2 1 1514 895 59 17 0 chr5 121860038 121860156 -30677103 + B2_Mm2 SINE B2 1 120 -75 1 1514 263 214 54 0 chr5 121860338 121860394 -30676865 - ID4_ SINE ID -2 81 23 1 1514 269 163 122 0 chr5 121860501 121860550 -30676709 - B3 SINE B2 -161 55 1 1 1514 663 261 75 11 chr5 121860797 121860983 -30676276 - B3A SINE B2 0 198 1 1 1514 679 185 235 34 chr5 121860984 121861163 -30676096 - B3 SINE B2 0 216 2 1 1514 957 269 50 53 chr5 121861344 121861627 -30675632 + B4 SINE B4 2 283 -9 1 1514 1084 61 0 58 chr5 121861895 121862051 -30675208 - B1_Mus1 SINE Alu 0 148 2 1 1514 805 95 17 25 chr5 121862168 121862287 -30674972 - B2_Mm2 SINE B2 -75 120 3 1 1514 225 235 77 141 chr5 121862459 121862602 -30674657 - PB1D9 SINE Alu -3 147 14 1 1514 337 250 26 13 chr5 121862619 121862696 -30674563 - ID4_ SINE ID -3 80 3 1 1514 875 246 24 5 chr5 121863224 121863432 -30673827 - B3 SINE B2 -4 212 1 1 1514 359 244 39 115 chr5 121863445 121863575 -30673684 - PB1D7 SINE Alu 0 120 1 1 1514 192 291 162 66 chr5 121863902 121864038 -30673221 + MIRm SINE MIR 15 163 -113 1 1514 1376 70 10 31 chr5 121864935 121865127 -30672132 + B2_Mm1a SINE B2 1 188 -5 1 1514 930 97 13 34 chr5 121865232 121865381 -30671878 + B1_Mus2 SINE Alu 2 147 0 1 1514 1209 103 16 11 chr5 121865495 121865681 -30671578 - B2_Mm2 SINE B2 -7 188 2 1 1514 406 182 252 0 chr5 121865687 121865786 -30671473 + B1_Mus1 SINE Alu 20 143 -5 1 1514 593 133 228 9 chr5 121865970 121866084 -30671175 - B1_Mm SINE Alu 0 147 9 1 1514 333 284 107 107 chr5 121865979 121866176 -30671083 - MT2B LTR ERVL -316 285 89 1 1514 783 214 80 20 chr5 121866199 121866399 -30670860 - B3 SINE B2 -4 212 1 1 1514 407 271 49 28 chr5 121866408 121866552 -30670707 - B1F SINE Alu -1 148 2 1 1514 770 223 53 34 chr5 121866743 121866952 -30670307 - B3 SINE B2 -3 213 1 1 1514 360 0 0 0 chr5 121867130 121867170 -30670089 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1514 822 256 70 20 chr5 121868126 121868325 -30668934 - B3 SINE B2 -6 210 2 1 1514 250 291 42 41 chr5 121868439 121868566 -30668693 - B1F2 SINE Alu -21 126 3 1 1514 281 268 59 89 chr5 121868566 121868644 -30668615 - ID SINE ID -143 81 8 1 1514 1235 41 7 0 chr5 121868884 121869030 -30668229 - B1_Mus2 SINE Alu 0 147 1 1 1514 1450 59 42 16 chr5 121869246 121869435 -30667824 - B2_Mm2 SINE B2 0 195 2 1 1514 216 0 0 0 chr5 121869460 121869484 -30667775 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1514 1137 95 0 13 chr5 121869496 121869645 -30667614 + B1_Mus2 SINE Alu 1 147 0 1 1514 719 203 21 0 chr5 121869662 121869805 -30667454 + B1_Mus2 SINE Alu 1 146 -1 1 1514 298 264 113 0 chr5 121869833 121869939 -30667320 - RSINE1 SINE B4 0 165 48 1 1514 410 221 51 42 chr5 121870201 121870319 -30666940 - B1_Mur2 SINE Alu 0 149 31 1 1514 244 241 0 0 chr5 121870913 121870967 -30666292 - B1F SINE Alu 0 149 96 1 1514 352 189 156 0 chr5 121871018 121871108 -30666151 - ID_B1 SINE B4 -34 190 87 1 1514 21 36 0 0 chr5 121871125 121871153 -30666106 + AT_rich Low_complexity Low_complexity 1 28 0 1 1514 1340 161 18 0 chr5 121871819 121872036 -30665223 - URR1A DNA MER1_type -4 222 2 1 1514 557 259 89 26 chr5 121872925 121873115 -30664144 + B3 SINE B2 10 211 -5 1 1514 231 257 65 39 chr5 121873148 121873225 -30664034 - ID_B1 SINE B4 -52 172 94 1 1514 586 212 73 127 chr5 121873274 121873479 -30663780 - B2_Mm2 SINE B2 0 195 2 1 1514 216 184 0 0 chr5 121874236 121874289 -30662970 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 1 1514 751 174 36 7 chr5 121874939 121875078 -30662181 - B1_Mur2 SINE Alu -6 143 1 1 1514 982 174 16 0 chr5 121875092 121875276 -30661983 - B2_Mm2 SINE B2 -8 187 1 1 1514 329 272 24 12 chr5 121875361 121875443 -30661816 - RSINE1 SINE B4 -80 85 3 1 1514 1384 49 43 21 chr5 121875665 121875853 -30661406 - B2_Mm1a SINE B2 0 193 2 1 1514 273 258 15 0 chr5 121877892 121877958 -30659301 - PB1D10 SINE Alu -9 108 42 1 1514 380 243 149 0 chr5 121878438 121878545 -30658714 + B3A SINE B2 1 123 -75 1 1514 1214 35 14 0 chr5 121880266 121880410 -30656849 + B1_Mus2 SINE Alu 2 147 0 1 1514 1134 221 91 8 chr5 121881158 121881422 -30655837 + B4A SINE B4 7 292 0 1 1514 265 237 17 0 chr5 121881926 121881985 -30655274 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1514 290 141 279 12 chr5 121882059 121882145 -30655114 + B1_Mur2 SINE Alu 41 149 0 1 1514 605 255 25 44 chr5 121882688 121882848 -30654411 + ID_B1 SINE B4 68 224 0 1 1514 580 94 222 0 chr5 121883146 121883263 -30653996 + B1_Mus2 SINE Alu 2 144 -3 1 1514 237 252 58 167 chr5 121883465 121883603 -30653656 + PB1 SINE Alu 3 125 -2 1 1514 566 191 56 19 chr5 121883497 121883604 -30653655 + ID_B1 SINE B4 112 222 -2 1 1514 909 206 32 41 chr5 121885961 121886179 -30651080 - B3 SINE B2 0 216 1 1 1514 462 301 102 0 chr5 121886194 121886360 -30650899 - B3A SINE B2 -15 183 1 1 1514 25 0 0 0 chr5 121886833 121886858 -30650401 + AT_rich Low_complexity Low_complexity 1 25 0 1 1514 230 0 33 0 chr5 121887004 121887034 -30650225 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1514 978 24 132 8 chr5 121887034 121887156 -30650103 - B1_Mus1 SINE Alu -9 139 1 1 1514 540 180 26 43 chr5 121887385 121887501 -30649758 - B1F2 SINE Alu -2 147 34 1 1514 258 313 80 31 chr5 121887433 121887578 -30649681 - MT2B LTR ERVL -328 256 104 1 1514 244 309 111 20 chr5 121888000 121888099 -30649160 - PB1D10 SINE Alu -1 116 9 1 1514 389 258 176 41 chr5 121888137 121888307 -30648952 - B3 SINE B2 0 195 3 1 1514 219 163 22 44 chr5 121889000 121889045 -30648214 - PB1 SINE Alu -69 58 15 1 1514 1200 55 7 7 chr5 121893065 121893213 -30644046 - B1_Mus1 SINE Alu 0 148 1 1 1514 701 201 169 22 chr5 121893643 121893821 -30643438 + B3 SINE B2 4 207 -9 1 1514 1198 74 0 0 chr5 121893846 121893994 -30643265 + B1_Mus1 SINE Alu 1 148 0 1 1514 373 225 169 8 chr5 121894372 121894502 -30642757 - ID_B1 SINE B4 -3 221 71 1 1514 244 86 0 0 chr5 121895939 121895974 -30641285 + B1_Mus2 SINE Alu 93 127 -20 1 1514 1182 102 73 0 chr5 121896024 121896201 -30641058 - B2_Mm1t SINE B2 -3 190 1 1 1514 709 196 249 0 chr5 121896203 121896376 -30640883 - B3 SINE B2 0 216 1 1 1515 363 252 32 48 chr5 121897471 121897494 -30639765 + ID SINE ID 65 85 -139 1 1515 565 145 15 0 chr5 121897494 121897600 -30639659 + B1_Mm SINE Alu 4 113 -36 1 1515 669 215 61 27 chr5 121897847 121897995 -30639264 - B2_Mm2 SINE B2 -30 165 13 1 1515 293 306 119 59 chr5 121898211 121898300 -30638959 - L1MB5 LINE L1 -274 5900 5818 1 1515 288 229 167 0 chr5 121898300 121898396 -30638863 - PB1D10 SINE Alu -5 112 1 1 1515 293 306 119 59 chr5 121898396 121898525 -30638734 - L1MB5 LINE L1 -357 5817 5669 1 1515 965 237 5 5 chr5 121898593 121898784 -30638475 - B3A SINE B2 -4 194 4 1 1515 1165 69 0 0 chr5 121898870 121899015 -30638244 + B1_Mus2 SINE Alu 3 147 0 1 1515 613 231 82 0 chr5 121899653 121899800 -30637459 - RSINE1 SINE B4 -4 161 3 1 1515 285 278 28 0 chr5 121899809 121899881 -30637378 - PB1D10 SINE Alu -9 108 35 1 1515 248 287 135 30 chr5 121899908 121900041 -30637218 - L2b LINE L2 -4 3422 3276 1 1515 869 144 0 46 chr5 121900329 121900482 -30636777 + B1_Mur4 SINE Alu 5 150 0 1 1515 255 357 75 16 chr5 121900628 121900816 -30636443 - L2b LINE L2 -236 3139 2941 1 1515 1353 91 27 0 chr5 121900947 121901133 -30636126 + B2_Mm1a SINE B2 1 191 -2 1 1515 27 0 0 0 chr5 121901245 121901272 -30635987 + AT_rich Low_complexity Low_complexity 1 27 0 1 1515 274 275 9 45 chr5 121903135 121903242 -30634017 + B1_Mus1 SINE Alu 2 105 -43 1 1515 309 300 100 0 chr5 121903259 121903379 -30633880 + ID_B1 SINE B4 55 186 -38 1 1515 485 250 83 0 chr5 121903291 121903411 -30633848 + B1_Mus2 SINE Alu 17 146 -1 1 1515 189 0 0 0 chr5 121903564 121903585 -30633674 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1515 1418 189 137 38 chr5 121903647 121904020 -30633239 + RMER10A LTR ERVL 1 410 -32 1 1515 440 280 43 50 chr5 121904038 121904177 -30633082 + MER54A LTR ERVL 156 293 -608 1 1515 377 291 47 54 chr5 121904690 121904830 -30632429 + MLT1B LTR MaLR 42 180 -210 1 1515 407 230 35 0 chr5 121904830 121904917 -30632342 + B1_Mur3 SINE Alu 1 90 -59 1 1515 1255 14 0 0 chr5 121905174 121905312 -30631947 + B1_Mus2 SINE Alu 1 138 -9 1 1515 650 188 39 15 chr5 121905438 121905568 -30631691 + B1_Mur1 SINE Alu 3 135 -14 1 1515 896 251 114 122 chr5 121906601 121906977 -30630282 + MTD LTR MaLR 47 419 0 1 1515 1511 22 60 6 chr5 121906995 121907159 -30630100 + B2_Mm1a SINE B2 1 163 -30 1 1515 315 0 0 0 chr5 121907159 121907194 -30630065 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1515 1511 22 60 6 chr5 121907194 121907212 -30630047 + B2_Mm1a SINE B2 164 191 -2 1 1515 465 139 14 0 chr5 121907222 121907294 -30629965 + B1_Mus2 SINE Alu 74 146 -1 1 1515 891 103 0 171 chr5 121907297 121907473 -30629786 + B1_Mm SINE Alu 2 147 0 1 1515 602 100 33 0 chr5 121907546 121907636 -30629623 + B1_Mus1 SINE Alu 24 116 -32 1 1515 483 175 124 19 chr5 121907646 121907751 -30629508 - B1_Mur3 SINE Alu -23 126 11 1 1515 334 271 11 76 chr5 121907677 121907769 -30629490 - MT2B LTR ERVL -360 241 156 1 1515 363 44 0 0 chr5 121908151 121908196 -30629063 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1515 1126 77 0 27 chr5 121908398 121908544 -30628715 + B1_Mus1 SINE Alu 2 143 -5 1 1515 488 150 0 48 chr5 121908759 121908843 -30628416 - PB1D9 SINE Alu -40 80 1 1 1515 850 130 178 6 chr5 121908846 121909009 -30628250 - B2_Mm2 SINE B2 -2 193 3 1 1515 282 29 0 0 chr5 121909020 121909055 -30628204 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1515 211 40 0 0 chr5 121909062 121909087 -30628172 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 1 1515 1244 55 0 0 chr5 121909087 121909233 -30628026 - B1_Mus2 SINE Alu -1 146 1 1 1515 305 320 30 0 chr5 121909462 121909562 -30627697 + ID_B1 SINE B4 67 169 -55 1 1515 416 245 36 45 chr5 121909481 121909592 -30627667 + PB1D10 SINE Alu 6 115 -2 1 1515 423 270 32 45 chr5 121909960 121909998 -30627261 - L1MB7 LINE L1 -25 6159 6123 1 1515 1609 210 218 31 chr5 121909998 121910513 -30626746 - RMER19C LTR ERVK 0 611 1 1 1515 423 270 32 45 chr5 121910513 121910629 -30626630 - L1MB7 LINE L1 -62 6122 6007 1 1515 779 139 8 0 chr5 121910630 121910752 -30626507 + B1_Mur4 SINE Alu 1 123 -27 1 1515 234 260 245 0 chr5 121910804 121910996 -30626263 - L1MB7 LINE L1 -213 5965 5727 1 1515 401 242 131 0 chr5 121911025 121911124 -30626135 - RSINE1 SINE B4 0 165 54 1 1515 424 228 0 32 chr5 121911285 121911380 -30625879 + B3 SINE B2 1 92 -124 1 1515 323 274 57 102 chr5 121911404 121911668 -30625591 - RMER12 LTR ERVK -334 988 737 1 1515 275 287 7 0 chr5 121911670 121911820 -30625439 + (CA)n Simple_repeat Simple_repeat 1 151 0 1 1515 301 258 0 15 chr5 121912214 121912281 -30624978 + ID4_ SINE ID 8 73 -10 1 1515 194 91 30 0 chr5 121912524 121912557 -30624702 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1515 207 0 0 0 chr5 121912815 121912838 -30624421 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1515 558 179 112 0 chr5 121912848 121913041 -30624218 - Lx4B LINE L1 -33 7025 6722 1 1515 249 182 0 0 chr5 121913734 121913789 -30623470 + CT-rich Low_complexity Low_complexity 1 55 0 1 1515 670 294 73 4 chr5 121913995 121914227 -30623032 + B4A SINE B4 1 248 -44 1 1515 189 0 0 0 chr5 121914242 121914263 -30622996 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1515 194 57 0 54 chr5 121914291 121914328 -30622931 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 1 1515 296 102 0 20 chr5 121914380 121914430 -30622829 + (GGGA)n Simple_repeat Simple_repeat 2 50 0 1 1515 307 284 92 0 chr5 121914507 121914616 -30622643 + B4A SINE B4 78 196 -96 1 1515 638 147 43 8 chr5 121914521 121914638 -30622621 + B1F2 SINE Alu 8 128 -21 1 1515 1584 26 16 21 chr5 121914891 121915084 -30622175 - B2_Mm1a SINE B2 -1 192 1 1 1515 291 121 0 0 chr5 121915382 121915440 -30621819 + (TCTG)n Simple_repeat Simple_repeat 4 61 0 1 1515 1248 28 7 0 chr5 121915484 121915629 -30621630 + B1_Mus2 SINE Alu 1 146 -1 1 1515 1006 145 114 5 chr5 121915662 121915863 -30621396 + URR1A DNA MER1_type 4 226 0 1 1515 794 172 0 0 chr5 121915867 121915989 -30621270 - B1_Mur3 SINE Alu -27 122 1 1 1515 426 289 69 23 chr5 121915874 121916005 -30621254 - B4 SINE B4 -88 204 68 1 1515 474 18 0 0 chr5 121916191 121916246 -30621013 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1515 213 240 80 0 chr5 121916360 121916410 -30620849 - MIR3 SINE MIR -40 168 115 1 1515 222 162 321 48 chr5 121916379 121916463 -30620796 - MIRm SINE MIR -125 151 45 1 1515 276 272 46 55 chr5 121916538 121916647 -30620612 - PB1D10 SINE Alu -4 113 6 1 1515 709 138 129 0 chr5 121916847 121916963 -30620296 + B1_Mur1 SINE Alu 13 143 -6 1 1515 473 262 128 28 chr5 121917065 121917316 -30619943 + B4A SINE B4 2 277 -15 1 1515 207 0 0 0 chr5 121917432 121917455 -30619804 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1515 669 141 102 0 chr5 121918106 121918240 -30619019 + B1F2 SINE Alu 1 149 0 1 1515 270 143 0 0 chr5 121918313 121918355 -30618904 + RSINE1 SINE B4 5 46 -119 1 1515 324 0 0 0 chr5 121918376 121918412 -30618847 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1515 258 333 0 0 chr5 121918485 121918557 -30618702 + PB1D10 SINE Alu 33 104 -13 1 1515 957 124 7 46 chr5 121918558 121918710 -30618549 + B1_Mus2 SINE Alu 2 147 0 1 1515 965 136 14 0 chr5 121918920 121919067 -30618192 - B1_Mur3 SINE Alu 0 149 1 1 1515 257 224 29 15 chr5 121919086 121919154 -30618105 + CT-rich Low_complexity Low_complexity 2 70 0 1 1515 611 234 47 47 chr5 121919186 121919356 -30617903 - B3 SINE B2 0 216 47 1 1515 279 0 0 0 chr5 121919380 121919411 -30617848 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 1515 393 110 0 189 chr5 121919411 121919501 -30617758 - B1_Mus2 SINE Alu -13 134 62 1 1515 186 382 66 0 chr5 121919571 121919647 -30617612 + MIRc SINE MIR 26 106 -162 1 1515 1827 180 21 63 chr5 121919940 121920319 -30616940 - ORR1C1 LTR MaLR 0 378 16 1 1515 1609 132 217 0 chr5 121922425 121922706 -30614553 - ORR1B2 LTR MaLR 0 367 26 1 1515 251 289 167 62 chr5 121922932 121923076 -30614183 - MIR3 SINE MIR -34 174 16 1 1515 905 109 58 0 chr5 121923867 121924005 -30613254 - B1_Mur4 SINE Alu 0 150 5 1 1515 1149 49 21 0 chr5 121924064 121924208 -30613051 - B1_Mus1 SINE Alu 0 148 2 1 1515 216 86 0 0 chr5 121924367 121924402 -30612857 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1515 1019 80 14 55 chr5 121924402 121924548 -30612711 - B1_Mus1 SINE Alu -8 140 1 1 1515 1001 93 14 0 chr5 121925458 121925597 -30611662 + B1_Mur4 SINE Alu 9 149 -1 1 1515 480 302 37 75 chr5 121925459 121925620 -30611639 + B4 SINE B4 94 248 -44 1 1515 1033 285 95 56 chr5 121925990 121926473 -30610786 - RLTR18B LTR ERVK -7 505 4 1 1515 261 0 0 0 chr5 121926536 121926565 -30610694 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1515 516 261 76 8 chr5 121926814 121926945 -30610314 - B1F1 SINE Alu -1 148 9 1 1515 252 349 43 92 chr5 121926815 121926979 -30610280 - B4 SINE B4 -69 223 68 1 1515 400 224 128 0 chr5 121926997 121927122 -30610137 + B1F SINE Alu 1 141 -8 1 1515 1003 127 208 0 chr5 121927313 121927486 -30609773 + B3 SINE B2 2 210 -6 1 1515 348 264 34 29 chr5 121927920 121928103 -30609156 - PB1D7 SINE Alu 0 149 1 1 1515 267 119 0 43 chr5 121928170 121928240 -30609019 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1515 254 229 16 16 chr5 121928241 121928303 -30608956 - RSINE1 SINE B4 -92 73 12 1 1515 288 146 18 50 chr5 121928319 121928385 -30608874 - B1F SINE Alu -8 141 77 1 1515 1031 92 0 14 chr5 121928756 121928899 -30608360 + B1_Mus2 SINE Alu 7 147 0 1 1515 321 276 29 39 chr5 121929219 121929321 -30607938 - PB1D10 SINE Alu -5 112 12 1 1515 392 0 21 0 chr5 121929811 121929859 -30607400 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1515 323 286 71 0 chr5 121929916 121930000 -30607259 - B4A SINE B4 -201 91 2 1 1515 185 136 45 0 chr5 121930110 121930140 -30607119 + T-rich Low_complexity Low_complexity 16 47 0 1 1515 1168 68 0 13 chr5 121930140 121930289 -30606970 - B1_Mm SINE Alu 0 147 1 1 1515 185 136 45 0 chr5 121930289 121930302 -30606957 + T-rich Low_complexity Low_complexity 3 15 0 1 1515 748 196 65 105 chr5 121930337 121930394 -30606865 - B3A SINE B2 -6 192 143 1 1515 423 0 0 0 chr5 121930394 121930441 -30606818 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1515 748 196 65 105 chr5 121930441 121930583 -30606676 - B3A SINE B2 -56 142 1 1 1515 5830 12 4 1 chr5 121930610 121931287 -30605972 - MERVL-int LTR ERVL -1368 4117 3439 1 1515 332 346 75 45 chr5 121931326 121931459 -30605800 - RSINE1 SINE B4 -15 150 14 1 1515 432 276 161 30 chr5 121931503 121931591 -30605668 + ID_B1 SINE B4 4 189 -31 1 1515 441 135 13 26 chr5 121931591 121931667 -30605592 + B1_Mur4 SINE Alu 38 112 -38 1 1515 799 200 126 29 chr5 121931666 121931772 -30605487 - RMER20B LTR ERVK -170 457 334 1 1515 459 0 0 0 chr5 121931772 121931823 -30605436 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1515 297 0 0 0 chr5 121931823 121931855 -30605404 + (GA)n Simple_repeat Simple_repeat 1 33 0 1 1515 936 214 216 14 chr5 121931855 121932130 -30605129 - RMER20B LTR ERVK -294 333 10 1 1515 292 214 84 14 chr5 121933496 121933567 -30603692 - RMER10A LTR ERVL -45 397 322 1 1515 212 175 0 0 chr5 121933789 121933829 -30603430 + T-rich Low_complexity Low_complexity 1 40 0 1 1515 411 259 68 8 chr5 121933829 121933946 -30603313 - ID_B1 SINE B4 0 224 101 1 1515 1013 87 72 0 chr5 121934078 121934216 -30603043 - B1_Mus1 SINE Alu 0 148 1 1 1515 615 216 50 50 chr5 121934245 121934386 -30602873 - B1_Mur4 SINE Alu 0 150 10 1 1515 236 394 0 0 chr5 121934329 121934395 -30602864 - B4A SINE B4 -142 150 85 1 1515 897 259 58 5 chr5 121934411 121934617 -30602642 - ID_B1 SINE B4 -2 222 6 1 1515 1206 54 0 13 chr5 121934701 121934851 -30602408 + B1_Mus1 SINE Alu 1 148 0 1 1515 1868 187 165 13 chr5 121935052 121935512 -30601747 - RLTR40 LTR ERVK -16 801 272 1 1515 284 247 25 49 chr5 121935554 121935635 -30601624 - B1F SINE Alu -3 146 68 1 1515 1217 61 0 0 chr5 121935959 121936106 -30601153 - B1_Mus1 SINE Alu 0 148 2 1 1515 432 197 189 41 chr5 121936117 121936239 -30601020 - B1F2 SINE Alu -7 142 3 1 1515 257 271 34 164 chr5 121936259 121936334 -30600925 + MER3 DNA MER1_type 67 126 -83 1 1515 330 296 107 46 chr5 121936334 121936465 -30600794 - B1_Mur3 SINE Alu -9 140 2 1 1515 257 271 34 164 chr5 121936465 121936535 -30600724 + MER3 DNA MER1_type 127 193 -16 1 1515 759 302 30 71 chr5 121937014 121937310 -30599949 - B4A SINE B4 0 292 9 1 1515 487 308 62 103 chr5 121938056 121938346 -30598913 - B4A SINE B4 0 292 15 1 1515 538 198 0 40 chr5 121938620 121938720 -30598539 - PB1D10 SINE Alu 0 117 22 1 1515 680 256 113 26 chr5 121938769 121939034 -30598225 - B4A SINE B4 -3 289 2 1 1515 977 249 29 0 chr5 121939428 121939637 -30597622 + ID_B1 SINE B4 6 220 -4 1 1515 689 164 86 0 chr5 121939653 121939781 -30597478 - B1_Mur3 SINE Alu -1 148 10 1 1515 1424 73 5 35 chr5 121939823 121940022 -30597237 + B2_Mm1a SINE B2 1 193 0 1 1515 3330 108 24 28 chr5 121940143 121940415 -30596844 - RLTR19C LTR ERVK -3 503 223 1 1515 1019 145 22 44 chr5 121940415 121940595 -30596664 + B2_Mm2 SINE B2 1 176 -19 1 1515 3330 108 24 28 chr5 121940595 121940826 -30596433 - RLTR19C LTR ERVK -284 222 2 1 1515 447 214 0 0 chr5 121940876 121940960 -30596299 + MTC LTR MaLR 52 135 -286 1 1515 240 191 9 200 chr5 121941373 121941478 -30595781 + ID_B1 SINE B4 122 206 -18 1 1515 834 89 0 0 chr5 121941407 121941519 -30595740 + B1_Mus1 SINE Alu 31 142 -6 1 1515 180 0 0 0 chr5 121941519 121941539 -30595720 + (CAAAC)n Simple_repeat Simple_repeat 2 21 0 1 1515 252 0 0 0 chr5 121941539 121941567 -30595692 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1515 230 169 0 33 chr5 121941567 121941628 -30595631 + GA-rich Low_complexity Low_complexity 2 60 0 1 1515 1131 59 0 0 chr5 121941714 121941850 -30595409 + B1_Mus2 SINE Alu 2 137 -10 1 1515 2516 203 88 23 chr5 121941870 121942470 -30594789 - RMER12 LTR ERVK -683 639 1 1 1515 327 351 78 6 chr5 121942730 121942896 -30594363 + ID_B1 SINE B4 47 224 0 1 1515 623 186 8 78 chr5 121943907 121944035 -30593224 - PB1D9 SINE Alu 0 120 2 1 1515 191 132 83 117 chr5 121944496 121944556 -30592703 - L3 LINE CR1 -3376 1113 1056 1 1515 357 24 0 0 chr5 121944855 121944897 -30592362 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1515 189 0 0 0 chr5 121945620 121945641 -30591618 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1 1515 1222 67 0 0 chr5 121945658 121945808 -30591451 - B1_Mur4 SINE Alu 0 150 1 1 1515 1386 95 11 0 chr5 121945815 121946004 -30591255 - B2_Mm1t SINE B2 -1 192 2 1 1515 180 97 0 0 chr5 121946025 121946056 -30591203 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1515 1511 83 0 5 chr5 121946351 121946545 -30590714 - B2_Mm2 SINE B2 -1 194 2 1 1515 1156 61 13 20 chr5 121946875 121947025 -30590234 + B1_Mur4 SINE Alu 2 150 0 1 1515 1333 69 35 0 chr5 121947144 121947318 -30589941 + B2_Mm2 SINE B2 2 181 -14 1 1515 21 36 0 0 chr5 121948230 121948258 -30589001 + AT_rich Low_complexity Low_complexity 1 28 0 1 1515 1239 55 0 0 chr5 121948258 121948404 -30588855 - B1_Mus2 SINE Alu 0 147 2 1 1515 1165 95 0 0 chr5 121948590 121948738 -30588521 + B1_Mus1 SINE Alu 1 148 0 1 1515 507 252 41 20 chr5 121948810 121948956 -30588303 + B1F SINE Alu 1 149 0 1 1515 394 265 47 4 chr5 121949549 121949656 -30587603 - PB1D10 SINE Alu 0 120 7 1 1515 222 356 47 19 chr5 121949568 121949674 -30587585 - ID_B1 SINE B4 -48 176 68 1 1515 574 336 65 15 chr5 121949734 121949997 -30587262 - B4A SINE B4 -4 288 13 1 1515 300 244 0 32 chr5 121950567 121950754 -30586505 + CT-rich Low_complexity Low_complexity 1 180 0 1 1515 2045 194 316 14 chr5 121954149 121954804 -30582455 + RMER21A LTR ERV1 3 834 -8 1 1515 253 287 73 16 chr5 121954818 121954942 -30582317 - L1MA4A LINE L1 -106 6197 6067 1 1515 1178 55 0 7 chr5 121955475 121955623 -30581636 - B1_Mus1 SINE Alu 0 148 2 1 1515 183 42 0 0 chr5 121955623 121955647 -30581612 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1515 365 293 49 0 chr5 121955656 121955779 -30581480 - B1F SINE Alu -1 148 20 1 1515 262 387 24 67 chr5 121955779 121955864 -30581395 - ID_B1 SINE B4 -2 222 24 1 1515 304 322 11 27 chr5 121955883 121956071 -30581188 - L1_Mur3 LINE L1 -782 5361 5177 1 1515 1314 173 0 42 chr5 121956167 121956403 -30580856 - URR1A DNA MER1_type 0 226 1 1 1515 429 221 62 47 chr5 121956460 121956588 -30580671 - ID_B1 SINE B4 -72 152 23 1 1515 373 285 40 7 chr5 121956599 121956751 -30580508 - L1_Mur3 LINE L1 -1128 5015 4859 1 1515 683 226 29 14 chr5 121956907 121957046 -30580213 - ID_B1 SINE B4 0 224 84 1 1515 905 314 166 32 chr5 121957077 121957806 -30579453 - Lx8 LINE L1 -6 7467 6641 1 1515 363 206 15 0 chr5 121957913 121957981 -30579278 - ORR1D2 LTR MaLR 0 370 302 1 1515 1158 62 7 0 chr5 121957981 121958127 -30579132 + B1_Mus2 SINE Alu 1 147 0 1 1515 360 243 15 116 chr5 121958127 121958262 -30578997 - ORR1D2 LTR MaLR -55 339 217 1 1515 1338 54 0 6 chr5 121958262 121958431 -30578828 + B2_Mm2 SINE B2 1 168 -27 1 1515 238 331 73 67 chr5 121958426 121958468 -30578791 - ORR1D2 LTR MaLR -116 278 242 1 1515 564 77 19 9 chr5 121958468 121958573 -30578686 + (TG)n Simple_repeat Simple_repeat 2 107 0 1 1515 530 288 167 17 chr5 121958573 121958766 -30578493 - ORR1D2 LTR MaLR -153 241 5 1 1515 1455 54 43 0 chr5 121958893 121959077 -30578182 - B2_Mm2 SINE B2 -3 192 1 1 1515 276 259 23 58 chr5 121959138 121959224 -30578035 - ID SINE ID -139 85 3 1 1515 318 243 45 134 chr5 121959306 121959463 -30577796 - L1_Mur3 LINE L1 -1441 4702 4560 1 1515 902 232 61 10 chr5 121959516 121959712 -30577547 - B3 SINE B2 -3 213 8 1 1515 3297 98 38 29 chr5 121959707 121960232 -30577027 - RMER6A LTR ERVK -225 531 2 1 1515 1031 270 48 31 chr5 121960333 121960753 -30576506 - L1_Mur3 LINE L1 -996 4884 4458 1 1515 2871 91 206 8 chr5 121960793 121961278 -30575981 - MT2B LTR ERVL -20 581 1 1 1515 395 340 72 21 chr5 121961279 121961331 -30575928 - L1_Mur3 LINE L1 -1650 4493 4444 1 1515 652 191 114 0 chr5 121961331 121961462 -30575797 + B1_Mus2 SINE Alu 2 147 0 1 1515 395 299 259 21 chr5 121961462 121961826 -30575433 - L1_Mur3 LINE L1 -1700 4443 3988 1 1515 796 62 0 26 chr5 121961878 121961993 -30575266 - B1_Mus2 SINE Alu 0 147 36 1 1515 360 316 126 16 chr5 121961994 121962184 -30575075 - L1_Mur3 LINE L1 -1960 3920 3710 1 1515 761 110 102 0 chr5 121962186 121962313 -30574946 - B1_Mur4 SINE Alu 0 150 11 1 1515 566 274 78 29 chr5 121962433 121962884 -30574375 - L1_Mur3 LINE L1 -2631 3512 3038 1 1515 664 283 7 0 chr5 121962886 121963024 -30574235 - B3 SINE B2 -76 140 2 1 1515 317 312 0 0 chr5 121963036 121963148 -30574111 - L1_Rod LINE L1 -2816 3031 2920 1 1515 1022 225 19 0 chr5 121963158 121963367 -30573892 - B3 SINE B2 -1 215 3 1 1515 291 211 10 21 chr5 121963450 121963547 -30573712 + CT-rich Low_complexity Low_complexity 1 96 0 1 1515 841 150 45 0 chr5 121963547 121963680 -30573579 - B1_Mur4 SINE Alu -6 144 6 1 1515 938 318 105 20 chr5 121963685 121964494 -30572765 - L1_Mur3 LINE L1 -3467 2413 1536 1 1515 1121 76 7 7 chr5 121964495 121964640 -30572619 + B1_Mus1 SINE Alu 4 148 0 1 1515 1093 52 0 0 chr5 121964680 121964815 -30572444 - B2_Mm2 SINE B2 -59 136 2 1 1515 1011 66 0 49 chr5 121964840 121964983 -30572276 - B1_Mus2 SINE Alu 0 147 12 1 1515 529 32 0 0 chr5 121965036 121965098 -30572161 - B1_Mus2 SINE Alu -9 138 77 1 1515 1470 60 16 0 chr5 121965108 121965293 -30571966 - B2_Mm1a SINE B2 -5 188 1 1 1515 462 245 0 70 chr5 121965360 121965474 -30571785 - B1_Mur1 SINE Alu 0 149 44 1 1515 872 55 0 0 chr5 121965524 121965633 -30571626 - B1_Mus1 SINE Alu 0 148 40 1 1515 307 137 76 76 chr5 121965567 121965646 -30571613 - RLTR25B LTR ERVK -519 509 431 1 1515 207 125 0 0 chr5 121965713 121965753 -30571506 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1515 234 218 38 25 chr5 121965762 121965842 -30571417 + (TATG)n Simple_repeat Simple_repeat 1 81 0 1 1515 375 314 30 10 chr5 121965938 121966088 -30571171 - B4A SINE B4 -123 169 16 1 1515 398 261 65 84 chr5 121966143 121966164 -30571095 + ID_B1 SINE B4 70 221 -3 1 1515 623 218 82 8 chr5 121966164 121966298 -30570961 + B1_Mur1 SINE Alu 6 149 0 1 1515 718 268 111 0 chr5 121966316 121966506 -30570753 + B3 SINE B2 1 211 -5 1 1515 225 318 34 0 chr5 121966836 121966924 -30570335 + L2 LINE L2 2358 2448 -971 1 1515 667 172 236 77 chr5 121967085 121967280 -30569979 - URR1A DNA MER1_type 0 226 1 1 1515 647 104 30 148 chr5 121967408 121967543 -30569716 - B1_Mus1 SINE Alu 0 148 30 1 1515 260 298 12 12 chr5 121967581 121967666 -30569593 - B1F SINE Alu -52 97 13 1 1515 180 163 143 0 chr5 121967693 121967742 -30569517 + L2 LINE L2 1983 2038 -1381 1 1515 730 270 102 0 chr5 121968000 121968196 -30569063 + B3 SINE B2 1 216 0 1 1515 237 179 33 82 chr5 121968250 121968311 -30568948 - LTR65 LTR ERV1 -350 319 262 1 1515 730 144 0 110 chr5 121968369 121968533 -30568726 + B1_Mur4 SINE Alu 5 150 0 1 1515 334 256 70 122 chr5 121968394 121968550 -30568709 + B4 SINE B4 104 251 -41 1 1515 24 0 0 0 chr5 121968616 121968640 -30568619 + AT_rich Low_complexity Low_complexity 1 24 0 1 1515 185 267 22 0 chr5 121969412 121969457 -30567802 + MIRm SINE MIR 90 135 -141 1 1515 252 86 0 0 chr5 121971750 121971785 -30565474 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1515 321 245 28 75 chr5 121972302 121972408 -30564851 + MT2B LTR ERVL 163 263 -338 1 1515 521 254 47 16 chr5 121972313 121972441 -30564818 + B1F2 SINE Alu 11 142 -7 1 1515 195 184 0 0 chr5 121972458 121972496 -30564763 + A-rich Low_complexity Low_complexity 1 38 0 1 1515 776 186 6 0 chr5 121972563 121972740 -30564519 + (TA)n Simple_repeat Simple_repeat 2 179 0 1 1515 1194 48 14 0 chr5 121974194 121974339 -30562920 + B1_Mus2 SINE Alu 1 147 0 1 1515 304 281 92 42 chr5 121975387 121975506 -30561753 + L1M5 LINE L1 5238 5362 -784 1 1515 259 157 0 0 chr5 121975613 121975664 -30561595 + (CTGGGG)n Simple_repeat Simple_repeat 3 53 0 1 1515 357 24 0 0 chr5 121976683 121976725 -30560534 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1515 221 308 72 69 chr5 121977262 121977381 -30559878 - PB1D10 SINE Alu -33 116 1 1 1515 1377 85 27 0 chr5 121977580 121977768 -30559491 + B2_Mm1a SINE B2 1 193 0 1 1515 557 37 37 0 chr5 121977822 121977903 -30559356 + L1Md_F2 LINE L1 6499 6582 0 1 1515 1622 26 5 5 chr5 121977919 121978111 -30559148 + B2_Mm1a SINE B2 2 193 0 1 1515 180 0 0 0 chr5 121978135 121978155 -30559104 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1515 1239 41 7 0 chr5 121978156 121978301 -30558958 + B1_Mus1 SINE Alu 3 148 0 1 1515 595 271 38 33 chr5 121978346 121978529 -30558730 + B3A SINE B2 7 190 -8 1 1515 288 256 22 117 chr5 121979614 121979751 -30557508 + B4 SINE B4 168 291 -1 1 1515 415 279 39 0 chr5 121979963 121980067 -30557192 - PB1D10 SINE Alu -2 115 8 1 1515 659 24 0 0 chr5 121980309 121980392 -30556867 + L1Md_A LINE L1 6500 6582 0 1 1515 1291 27 0 7 chr5 121980408 121980556 -30556703 + B1_Mus2 SINE Alu 1 147 0 1 1515 514 227 84 0 chr5 121980984 121981103 -30556156 - B3 SINE B2 0 216 88 1 1515 351 216 26 26 chr5 121981331 121981407 -30555852 + B1F1 SINE Alu 74 149 0 1 1515 228 86 0 0 chr5 121982040 121982075 -30555184 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1 1515 822 161 7 62 chr5 121982605 121982751 -30554508 + B1_Mur4 SINE Alu 1 138 -12 1 1515 212 129 138 46 chr5 121983567 121983632 -30553627 + B1_Mur2 SINE Alu 79 149 0 1 1515 518 91 142 83 chr5 121983642 121983762 -30553497 + B1_Mus1 SINE Alu 5 131 -17 1 1515 440 219 207 18 chr5 121983762 121983923 -30553336 - RLTR11A LTR ERVK -303 225 24 1 1515 1113 56 42 7 chr5 121983923 121984066 -30553193 + B1_Mus1 SINE Alu 1 148 0 1 1515 236 130 22 0 chr5 121984066 121984112 -30553147 + A-rich Low_complexity Low_complexity 3 49 0 1 1515 324 294 75 8 chr5 121984148 121984163 -30553096 + B4 SINE B4 70 92 -200 1 1515 750 144 8 8 chr5 121984163 121984289 -30552970 + B1_Mus1 SINE Alu 3 128 -20 1 1515 233 284 16 121 chr5 121984469 121984483 -30552776 + MT2B2 LTR ERVL 142 199 -385 1 1515 315 270 0 13 chr5 121984483 121984496 -30552763 + ID SINE ID 70 81 -143 1 1515 492 174 0 11 chr5 121984496 121984583 -30552676 + B1F SINE Alu 1 86 -63 1 1515 629 224 150 6 chr5 121984612 121984792 -30552467 + B3 SINE B2 1 206 -10 1 1515 414 0 0 0 chr5 121984855 121984901 -30552358 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 1515 1378 58 0 0 chr5 121984901 121985061 -30552198 - B2_Mm1t SINE B2 -32 161 2 1 1515 226 208 37 111 chr5 121985439 121985520 -30551739 + MT2B LTR ERVL 164 238 -363 1 1515 512 217 100 0 chr5 121985456 121985576 -30551683 + B1F2 SINE Alu 11 142 -7 1 1515 885 242 23 18 chr5 121985586 121985805 -30551454 + ID_B1 SINE B4 5 224 0 1 1515 258 207 0 0 chr5 121987260 121987318 -30549941 + A-rich Low_complexity Low_complexity 1 58 0 1 1515 628 231 0 8 chr5 121987924 121988042 -30549217 - PB1D10 SINE Alu 0 117 1 1 1515 280 288 0 27 chr5 121988091 121988166 -30549093 - ID4_ SINE ID -9 74 2 1 1515 396 0 0 0 chr5 121989116 121989160 -30548099 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1515 958 172 81 0 chr5 121989515 121989713 -30547546 - B3 SINE B2 -1 215 2 1 1515 440 355 0 29 chr5 121989761 121989900 -30547359 - RSINE1 SINE B4 -28 137 3 1 1515 1166 61 7 0 chr5 121989995 121990142 -30547117 + B1_Mus1 SINE Alu 1 148 0 1 1515 271 268 36 24 chr5 121990203 121990287 -30546972 + RSINE1 SINE B4 59 143 -22 1 1515 2059 107 17 0 chr5 121991008 121991308 -30545951 + ORR1A4 LTR MaLR 17 321 -8 1 1515 1134 136 11 0 chr5 121991366 121991542 -30545717 + B2_Mm1t SINE B2 2 179 -14 1 1515 307 112 330 27 chr5 121991588 121991697 -30545562 + B2_Mm2 SINE B2 47 188 -7 1 1515 1313 79 25 50 chr5 121991868 121992067 -30545192 + B2_Mm2 SINE B2 1 194 -1 1 1515 496 198 32 79 chr5 121992285 121992411 -30544848 + B1_Mur1 SINE Alu 29 148 -1 1 1515 26 30 0 0 chr5 121993084 121993117 -30544142 + AT_rich Low_complexity Low_complexity 1 33 0 1 1515 690 186 23 0 chr5 121993221 121993350 -30543909 - B1_Mur1 SINE Alu 0 149 18 1 1515 258 292 8 138 chr5 121993240 121993363 -30543896 - MT2B LTR ERVL -326 275 169 1 1515 796 234 6 43 chr5 121993381 121993542 -30543717 - B3A SINE B2 -42 156 2 1 1515 294 73 0 0 chr5 121993561 121993602 -30543657 + (T)n Simple_repeat Simple_repeat 1 41 0 1 1515 263 250 39 0 chr5 121993637 121993689 -30543570 + RSINE1 SINE B4 52 105 -60 1 1515 267 211 88 0 chr5 121993826 121993883 -30543376 - PB1 SINE Alu -2 125 64 1 1515 839 151 0 7 chr5 121994063 121994195 -30543064 + B1_Mus2 SINE Alu 9 139 -8 1 1515 216 0 0 0 chr5 121994195 121994219 -30543040 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1515 347 228 88 10 chr5 121994321 121994423 -30542836 - RSINE1 SINE B4 -41 124 15 1 1515 442 266 90 14 chr5 121994448 121994593 -30542666 - ID_B1 SINE B4 -68 156 1 1 1515 234 91 0 0 chr5 121995383 121995416 -30541843 + (CGG)n Simple_repeat Simple_repeat 2 34 0 1 1515 382 167 0 42 chr5 121995596 121995715 -30541544 + (CCG)n Simple_repeat Simple_repeat 3 116 0 1 1515 27 29 0 0 chr5 121995743 121995777 -30541482 + GC_rich Low_complexity Low_complexity 1 34 0 1 1515 300 53 0 0 chr5 121996335 121996373 -30540886 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 1 1515 1165 64 0 0 chr5 121996373 121996513 -30540746 - B1_Mus1 SINE Alu -8 140 1 1 1515 1480 208 21 9 chr5 121996822 121997147 -30540112 - RLTR42-int LTR ERVK -4689 833 505 1 1515 1552 47 16 5 chr5 121997541 121997734 -30539525 + B2_Mm2 SINE B2 1 195 0 1 1515 2955 115 33 50 chr5 121997837 121998320 -30538939 - MT2C_Mm LTR ERVL 0 475 1 1 1515 491 274 7 20 chr5 121998403 121998552 -30538707 - RLTR42-int LTR ERVK -5222 300 154 1 1515 1115 101 36 0 chr5 121998854 121999022 -30538237 + B2_Mm2 SINE B2 8 181 -14 1 1515 1012 158 75 19 chr5 121999779 121999992 -30537267 - RMER12 LTR ERVK -29 1293 1069 1 1515 332 174 48 124 chr5 122000000 122000105 -30537154 - RMER12 LTR ERVK -268 1054 958 1 1515 1502 265 68 85 chr5 122000099 122000965 -30536294 - RMER12 LTR ERVK -390 1014 1 2 1515 505 178 0 0 chr5 122000979 122001069 -30536190 - B1_Mus1 SINE Alu -57 91 2 3 1515 302 227 0 129 chr5 122000986 122001087 -30536172 - MT2B LTR ERVL -361 240 153 4 1515 2209 91 25 9 chr5 122002751 122003072 -30534187 + ORR1A4 LTR MaLR 1 326 -3 5 1515 207 0 0 0 chr5 122003740 122003763 -30533496 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 6 1515 1096 37 15 0 chr5 122003764 122003899 -30533360 - B1_Mus1 SINE Alu -10 138 2 7 1515 212 152 0 0 chr5 122005354 122005387 -30531872 + B3 SINE B2 98 130 -86 8 1515 369 105 276 0 chr5 122005456 122005532 -30531727 + PB1D9 SINE Alu 14 110 -10 9 1515 301 185 0 0 chr5 122005723 122005777 -30531482 + B3A SINE B2 29 82 -116 1 1515 468 301 5 36 chr5 122005815 122006008 -30531251 + L1M2 LINE L1 2485 2671 -4178 1 1515 536 269 153 6 chr5 122006026 122006202 -30531057 + ID_B1 SINE B4 19 220 -4 1 1515 228 278 104 46 chr5 122006203 122006277 -30530982 + L1M2 LINE L1 3127 3204 -3641 1 1515 2165 129 3 0 chr5 122006277 122006603 -30530656 - ORR1A2 LTR MaLR 0 327 1 1 1515 228 278 104 46 chr5 122006603 122006769 -30530490 + L1M2 LINE L1 3205 3381 -3464 1 1515 307 276 32 96 chr5 122006789 122006837 -30530422 - CYRA11_Mm Unknown Y-chromosome -275 342 304 1 1515 1192 41 0 0 chr5 122006837 122006983 -30530276 + B1_Mus1 SINE Alu 1 146 -2 1 1515 717 143 15 8 chr5 122006983 122007117 -30530142 + URR1B DNA MER1_type 91 225 0 1 1515 1269 96 16 16 chr5 122007475 122007665 -30529594 - B2_Mm2 SINE B2 -5 190 1 1 1515 597 102 0 58 chr5 122008123 122008227 -30529032 + L1_Mur3 LINE L1 3844 3941 -1939 1 1515 2521 162 102 10 chr5 122008227 122008737 -30528522 - MTC-int LTR MaLR -325 933 377 1 1515 645 205 0 23 chr5 122008765 122008895 -30528364 - B1_Mus1 SINE Alu -21 127 1 2 1515 514 193 209 29 chr5 122008895 122008981 -30528278 - MTC-int LTR MaLR -862 396 303 1 1515 2087 130 77 21 chr5 122008981 122009358 -30527901 - RMER10B LTR ERVL 0 398 1 2 1515 514 193 209 29 chr5 122009358 122009400 -30527859 - MTC-int LTR MaLR -956 302 243 1 1515 390 117 0 0 chr5 122009403 122009461 -30527798 + (T)n Simple_repeat Simple_repeat 1 58 0 2 1515 1137 74 0 0 chr5 122009461 122009609 -30527650 - B1_Mus1 SINE Alu 0 148 1 2 1515 390 117 0 0 chr5 122009609 122009627 -30527632 + (T)n Simple_repeat Simple_repeat 1 18 0 2 1515 1275 87 27 0 chr5 122009671 122009856 -30527403 - B2_Mm2 SINE B2 -5 190 1 2 1515 803 178 87 73 chr5 122009861 122010067 -30527192 - MTC-int LTR MaLR -1044 214 6 1 1515 479 194 10 20 chr5 122010067 122010167 -30527092 - MTC LTR MaLR -21 398 300 1 1515 664 257 67 34 chr5 122010168 122010323 -30526936 + B3 SINE B2 1 166 -50 2 1515 195 42 0 0 chr5 122010323 122010347 -30526912 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1515 664 257 67 34 chr5 122010347 122010381 -30526878 + B3 SINE B2 167 198 -18 2 1515 1086 68 0 26 chr5 122010381 122010532 -30526727 + B1_Mus1 SINE Alu 2 148 0 2 1515 664 257 67 34 chr5 122010532 122010550 -30526709 + B3 SINE B2 199 216 0 2 1515 1743 132 39 29 chr5 122010546 122010857 -30526402 - MTC LTR MaLR -106 315 2 1 1515 2365 117 35 2 chr5 122010886 122011282 -30525977 - RMER6A LTR ERVK -10 746 338 2 1515 1163 132 122 9 chr5 122011375 122011605 -30525654 + RLTR11A LTR ERVK 1 256 -272 3 1515 821 165 18 12 chr5 122011606 122011772 -30525487 - RMER17B LTR ERVK 0 958 792 3 1515 570 95 32 0 chr5 122011793 122011888 -30525371 + RLTR11A LTR ERVK 245 342 -186 3 1515 423 286 64 23 chr5 122012183 122012355 -30524904 + RLTR41 LTR ERV1 268 446 0 3 1515 1043 154 11 11 chr5 122012357 122012547 -30524712 + RLTR11A LTR ERVK 339 528 0 3 1515 2299 57 0 86 chr5 122012805 122013090 -30524169 + ORR1A2 LTR MaLR 1 271 -56 3 1515 943 81 73 0 chr5 122013090 122013226 -30524033 + B1_Mm SINE Alu 2 147 0 3 1515 2299 57 0 86 chr5 122013226 122013240 -30524019 + ORR1A2 LTR MaLR 272 272 -55 3 1515 1580 26 5 0 chr5 122013240 122013430 -30523829 + B2_Mm1t SINE B2 2 192 -1 3 1515 2299 57 0 86 chr5 122013430 122013478 -30523781 + ORR1A2 LTR MaLR 272 319 -8 3 1515 1543 37 0 0 chr5 122013928 122014117 -30523142 + B2_Mm1a SINE B2 1 189 -4 3 1515 1130 61 0 0 chr5 122014117 122014263 -30522996 + B1_Mm SINE Alu 1 147 0 3 1515 238 238 25 12 chr5 122014263 122014344 -30522915 + (CAAA)n Simple_repeat Simple_repeat 2 83 0 3 1515 390 200 11 43 chr5 122014446 122014540 -30522719 - RSINE1 SINE B4 -66 99 9 4 1515 294 29 0 0 chr5 122015004 122015039 -30522220 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1515 352 257 44 71 chr5 122015753 122015866 -30521393 - PB1D7 SINE Alu -2 118 9 4 1515 760 153 14 7 chr5 122015887 122016032 -30521227 - B1_Mus2 SINE Alu 0 147 2 4 1515 231 225 0 0 chr5 122019233 122019304 -30517955 + T-rich Low_complexity Low_complexity 1 71 0 4 1515 737 167 0 96 chr5 122019304 122019470 -30517789 - B1_Mur4 SINE Alu 0 150 1 4 1515 201 175 0 0 chr5 122019684 122019724 -30517535 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1515 411 328 168 3 chr5 122019819 122019919 -30517340 - L1MB7 LINE L1 -110 6074 5940 4 1515 189 0 0 0 chr5 122019919 122019940 -30517319 + (C)n Simple_repeat Simple_repeat 1 21 0 4 1515 411 328 168 3 chr5 122019940 122020142 -30517117 - L1MB7 LINE L1 -245 5939 5723 4 1515 323 291 34 17 chr5 122020286 122020405 -30516854 - L1MB7 LINE L1 -566 5608 5488 4 1515 296 266 19 12 chr5 122021150 122021264 -30515995 - L1MC4 LINE L1 -1206 6836 6702 4 1515 225 0 0 0 chr5 122022880 122022905 -30514354 + (GA)n Simple_repeat Simple_repeat 1 25 0 5 1515 780 131 137 40 chr5 122023058 122023233 -30514026 + B2_Mm2 SINE B2 1 192 -3 5 1515 482 265 79 12 chr5 122024307 122024471 -30512788 + ORR1E LTR MaLR 1 175 -184 5 1515 377 113 0 31 chr5 122024579 122024643 -30512616 - PB1D9 SINE Alu -9 111 50 5 1515 484 219 24 32 chr5 122024658 122024781 -30512478 - ID_B1 SINE B4 -1 223 102 5 1515 549 306 39 0 chr5 122027116 122027296 -30509963 - MER20 DNA MER1_type -2 217 31 5 1515 794 144 64 43 chr5 122027647 122027752 -30509507 + B2_Mm2 SINE B2 3 108 -87 5 1515 200 59 29 0 chr5 122027752 122027786 -30509473 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1515 914 113 23 0 chr5 122027786 122027919 -30509340 - B1_Mm SINE Alu -11 136 1 5 1515 794 144 64 43 chr5 122027919 122028000 -30509259 + B2_Mm2 SINE B2 109 193 -2 5 1516 1141 48 7 7 chr5 122028931 122029078 -30508181 + B1_Mus1 SINE Alu 1 147 -1 5 1516 707 104 0 0 chr5 122030061 122030167 -30507092 + B2_Mm2 SINE B2 1 106 -89 6 1516 410 265 40 81 chr5 122030438 122030586 -30506673 + B1F SINE Alu 7 148 -1 6 1516 261 196 18 0 chr5 122030953 122031009 -30506250 - MLT1H2 LTR MaLR 0 489 433 6 1516 245 336 62 55 chr5 122031190 122031281 -30505978 - MLT1H1 LTR MaLR -362 193 104 6 1516 1833 147 31 11 chr5 122031281 122031633 -30505626 + RLTR15 LTR ERVK 1 359 0 6 1516 245 336 62 55 chr5 122031633 122031686 -30505573 - MLT1H1 LTR MaLR -452 103 48 6 1516 792 192 14 0 chr5 122031731 122031877 -30505382 - B1_Mur3 SINE Alu -1 148 1 6 1516 216 0 0 0 chr5 122032493 122032517 -30504742 + (TC)n Simple_repeat Simple_repeat 1 24 0 6 1516 1075 69 7 0 chr5 122032766 122032911 -30504348 - B1_Mus1 SINE Alu -2 146 1 6 1516 4182 14 2 12 chr5 122033034 122033532 -30503727 + MT2_Mm LTR ERVL 1 493 0 6 1516 373 264 37 9 chr5 122033598 122033705 -30503554 + PB1D10 SINE Alu 1 110 -7 6 1516 324 0 0 0 chr5 122035029 122035065 -30502194 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1516 334 326 29 29 chr5 122035066 122035202 -30502057 - RSINE1 SINE B4 -15 150 15 7 1516 795 84 17 0 chr5 122035331 122035450 -30501809 - B1_Mus1 SINE Alu 0 148 28 7 1516 1135 54 0 0 chr5 122035608 122035755 -30501504 - B1_Mus1 SINE Alu 0 148 2 7 1516 189 0 0 0 chr5 122036221 122036242 -30501017 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1516 198 0 0 0 chr5 122036278 122036300 -30500959 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 7 1516 268 245 0 0 chr5 122036334 122036387 -30500872 - PB1D10 SINE Alu -30 87 35 7 1516 181 275 71 14 chr5 122037172 122037242 -30500017 - MIRc SINE MIR -153 115 42 7 1516 750 31 0 0 chr5 122037302 122037399 -30499860 + B1_Mus2 SINE Alu 44 140 -7 7 1516 1114 55 0 7 chr5 122037852 122037998 -30499261 + B1_Mm SINE Alu 2 146 -1 7 1516 591 185 264 0 chr5 122038441 122038619 -30498640 - URR1B DNA MER1_type 0 225 1 8 1516 426 53 0 0 chr5 122038898 122038955 -30498304 - B1_Mus1 SINE Alu -70 78 22 8 1516 1054 160 27 64 chr5 122039018 122039238 -30498021 + B3 SINE B2 1 212 -4 8 1516 1561 26 5 0 chr5 122039417 122039607 -30497652 - B2_Mm1a SINE B2 -2 191 1 8 1516 327 209 88 0 chr5 122039747 122039838 -30497421 - MIRc SINE MIR -54 214 116 8 1516 604 245 92 60 chr5 122040017 122040234 -30497025 - ID_B1 SINE B4 0 224 1 8 1516 401 250 65 0 chr5 122040254 122040362 -30496897 - ID_B1 SINE B4 -7 217 103 8 1516 1207 184 130 22 chr5 122040336 122040697 -30496562 + RLTR16 LTR ERVK 102 501 -4 8 1516 1406 44 22 0 chr5 122040872 122041053 -30496206 + B2_Mm1t SINE B2 2 186 -7 8 1516 234 0 0 0 chr5 122042116 122042142 -30495117 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 8 1516 267 319 76 0 chr5 122042427 122042546 -30494713 + MIR SINE MIR 106 233 -29 9 1516 455 205 0 0 chr5 122042644 122042727 -30494532 + PB1D10 SINE Alu 30 112 -5 9 1516 276 221 8 8 chr5 122042796 122042871 -30494388 + B1F SINE Alu 40 146 -3 9 1516 198 150 0 0 chr5 122043491 122043531 -30493728 + (AACTG)n Simple_repeat Simple_repeat 4 43 0 9 1516 338 108 0 22 chr5 122044625 122044691 -30492568 - B2_Mm2 SINE B2 -107 109 47 9 1516 1126 103 52 0 chr5 122044724 122044898 -30492361 - B2_Mm2 SINE B2 -11 184 2 9 1516 381 167 24 49 chr5 122044899 122044981 -30492278 + B1_Mur1 SINE Alu 33 112 -37 9 1516 276 100 0 0 chr5 122044984 122045024 -30492235 + (TA)n Simple_repeat Simple_repeat 2 41 0 9 1516 232 261 15 0 chr5 122045226 122045291 -30491968 - L1MC LINE L1 -2112 5770 5705 9 1516 1018 137 65 11 chr5 122045447 122045631 -30491628 + B2_Mm2 SINE B2 2 195 0 9 1516 666 206 0 8 chr5 122045658 122045790 -30491469 + ID_B1 SINE B4 93 223 -1 1 1516 424 0 36 0 chr5 122046108 122046164 -30491095 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1516 201 357 0 0 chr5 122046696 122046729 -30490530 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1516 2781 77 28 3 chr5 122046729 122047119 -30490140 - MTB LTR MaLR 0 400 1 1 1516 201 357 0 0 chr5 122047119 122047169 -30490090 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1516 622 290 72 19 chr5 122047173 122047437 -30489822 - B4 SINE B4 -13 279 2 1 1516 661 272 100 30 chr5 122050228 122050491 -30486768 + RMER5 LTR ERV1 11 292 -242 1 1516 2769 219 107 57 chr5 122050491 122051035 -30486224 + RLTR13D1 LTR ERVK 1 540 -483 1 1516 1175 34 0 13 chr5 122051035 122051173 -30486086 + B1_Mus2 SINE Alu 1 138 -9 1 1516 243 0 0 0 chr5 122051173 122051200 -30486059 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1516 2769 123 82 27 chr5 122051210 122051641 -30485618 + RLTR13D1 LTR ERVK 351 806 0 1 1516 228 86 0 0 chr5 122051791 122051826 -30485433 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1516 542 179 0 132 chr5 122051869 122051998 -30485261 + B1_Mur4 SINE Alu 1 112 -38 1 1516 1735 184 47 59 chr5 122052325 122052831 -30484428 + RLTR45-int LTR ERVK 3140 3460 -3946 1 1516 1079 54 0 58 chr5 122052831 122052987 -30484272 + B1_Mus2 SINE Alu 1 147 0 1 1516 216 0 0 0 chr5 122052988 122053012 -30484247 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1516 1980 165 25 61 chr5 122053024 122053469 -30483790 + RLTR45-int LTR ERVK 4596 5024 -2220 1 1516 603 112 0 10 chr5 122053472 122053571 -30483688 - B1_Mur4 SINE Alu 0 150 53 1 1516 624 227 113 5 chr5 122053575 122053761 -30483498 + RLTR18B LTR ERVK 301 506 -6 1 1516 379 229 37 0 chr5 122053795 122053891 -30483368 - B1F SINE Alu -9 111 3 1 1516 180 111 0 0 chr5 122054599 122054626 -30482633 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1516 436 184 143 0 chr5 122054649 122054747 -30482512 - PB1D9 SINE Alu 0 120 9 1 1516 552 244 34 0 chr5 122054788 122054907 -30482352 - RSINE1 SINE B4 -39 126 4 1 1516 419 255 167 7 chr5 122054935 122054951 -30482308 - RSINE1 SINE B4 0 165 149 1 1516 314 23 23 0 chr5 122054951 122054994 -30482265 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1516 419 255 167 7 chr5 122054994 122055115 -30482144 - RSINE1 SINE B4 -17 148 7 1 1516 579 264 82 33 chr5 122055951 122056135 -30481124 - B3 SINE B2 -23 193 1 1 1516 1148 82 29 0 chr5 122056579 122056749 -30480510 + B2_Mm1t SINE B2 6 180 -13 1 1516 324 0 0 0 chr5 122056881 122056917 -30480342 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 1 1516 555 16 0 0 chr5 122057062 122057126 -30480133 + (TC)n Simple_repeat Simple_repeat 1 64 0 1 1516 279 0 0 0 chr5 122058095 122058126 -30479133 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1 1516 195 129 0 0 chr5 122058126 122058157 -30479102 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1 1516 255 141 47 0 chr5 122058157 122058221 -30479038 + (TA)n Simple_repeat Simple_repeat 2 68 0 1 1516 311 292 24 89 chr5 122058221 122058263 -30478996 + MT2B LTR ERVL 125 158 -443 1 1516 810 206 7 0 chr5 122058263 122058409 -30478850 + B1_Mus1 SINE Alu 2 148 0 1 1516 273 288 107 57 chr5 122058439 122058464 -30478795 + ID_B1 SINE B4 78 224 0 1 1516 605 175 0 9 chr5 122058464 122058579 -30478680 + B1_Mur3 SINE Alu 35 148 -1 1 1516 598 280 18 6 chr5 122058597 122058766 -30478493 - B3A SINE B2 -24 174 4 1 1516 282 289 45 123 chr5 122059042 122059297 -30477962 + MTEa LTR MaLR 56 285 -94 1 1516 219 343 61 0 chr5 122059506 122059525 -30477734 - PB1D10 SINE Alu -8 109 5 1 1516 227 312 38 0 chr5 122059525 122059605 -30477654 - ID_B1 SINE B4 -56 168 86 1 1516 187 302 23 23 chr5 122060281 122060369 -30476890 - MIRc SINE MIR -72 196 109 1 1516 664 178 29 22 chr5 122060458 122060596 -30476663 + B1_Mur2 SINE Alu 9 147 -2 1 1516 449 180 6 18 chr5 122061180 122061350 -30475909 + (TA)n Simple_repeat Simple_repeat 1 168 0 1 1516 736 234 46 31 chr5 122061406 122061666 -30475593 + MTD LTR MaLR 126 407 -14 1 1516 279 250 25 0 chr5 122061793 122061873 -30475386 - ID2 SINE ID 0 83 2 1 1516 315 0 0 0 chr5 122061932 122061967 -30475292 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1516 999 68 67 7 chr5 122061970 122062119 -30475140 - B2_Mm2 SINE B2 -35 160 3 1 1516 841 37 0 0 chr5 122062557 122062665 -30474594 + B1_Mm SINE Alu 29 136 -11 1 1516 329 17 33 33 chr5 122062665 122062725 -30474534 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 1 1516 1698 214 52 46 chr5 122063168 122063644 -30473615 + RLTR1C LTR ERV1 25 503 0 1 1516 585 224 160 0 chr5 122063754 122063910 -30473349 - ID_B1 SINE B4 -20 204 24 1 1516 855 144 13 20 chr5 122064693 122064842 -30472417 - B1_Mus1 SINE Alu 0 148 1 1 1516 426 298 92 74 chr5 122064932 122065215 -30472044 - ORR1E LTR MaLR 0 359 72 1 1516 390 206 52 0 chr5 122065387 122065484 -30471775 + PB1D7 SINE Alu 18 119 -1 1 1516 1157 82 0 0 chr5 122065550 122065708 -30471551 + B2_Mm2 SINE B2 1 158 -37 1 1516 462 36 0 0 chr5 122065709 122065765 -30471494 + (GAAA)n Simple_repeat Simple_repeat 2 57 0 1 1516 225 0 0 0 chr5 122065801 122065826 -30471433 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1516 295 286 8 98 chr5 122065850 122065982 -30471277 - PB1D7 SINE Alu 0 120 1 1 1516 207 0 0 0 chr5 122066058 122066081 -30471178 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1516 237 322 69 0 chr5 122066170 122066257 -30471002 - ID_B1 SINE B4 -108 116 24 1 1516 479 309 33 44 chr5 122067027 122067210 -30470049 + MIRb SINE MIR 55 235 -33 1 1516 243 306 28 0 chr5 122067236 122067308 -30469951 + ID4_ SINE ID 6 79 -4 1 1516 426 39 0 0 chr5 122067730 122067782 -30469477 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1516 337 162 0 75 chr5 122067993 122068073 -30469186 + ID_B1 SINE B4 102 175 -49 1 1516 616 177 46 0 chr5 122068156 122068286 -30468973 + B1_Mur4 SINE Alu 2 137 -13 1 1516 200 152 0 42 chr5 122068299 122068347 -30468912 + A-rich Low_complexity Low_complexity 4 49 0 1 1516 243 125 0 0 chr5 122068476 122068516 -30468743 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1516 1114 28 7 40 chr5 122068518 122068666 -30468593 - B1_Mus2 SINE Alu -4 143 1 1 1516 225 313 15 0 chr5 122069556 122069623 -30467636 + CT-rich Low_complexity Low_complexity 1 68 0 1 1516 644 230 67 89 chr5 122069696 122069920 -30467339 + ID_B1 SINE B4 3 221 -3 1 1516 397 314 82 10 chr5 122069924 122070120 -30467139 + B3 SINE B2 1 210 -6 1 1516 320 200 29 0 chr5 122070522 122070592 -30466667 + ID_B1 SINE B4 86 157 -67 1 1516 701 252 11 39 chr5 122070625 122070819 -30466440 + B3A SINE B2 5 182 -13 1 1516 1064 68 0 27 chr5 122070819 122070969 -30466290 + B1_Mus2 SINE Alu 2 147 0 1 1516 350 288 34 115 chr5 122070969 122070982 -30466277 + B2_Mm2 SINE B2 183 195 0 1 1516 231 114 0 0 chr5 122070982 122071017 -30466242 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1516 295 277 0 0 chr5 122071027 122071092 -30466167 + PB1D9 SINE Alu 1 65 -55 1 1516 222 128 0 0 chr5 122071721 122071760 -30465499 + (GGGTG)n Simple_repeat Simple_repeat 2 40 0 1 1516 876 104 82 7 chr5 122071780 122071915 -30465344 + B1_Mus1 SINE Alu 3 147 -1 1 1516 785 268 142 31 chr5 122073018 122073369 -30463890 + RMER5 LTR ERV1 11 400 -134 1 1516 244 200 85 110 chr5 122073372 122073490 -30463769 + PB1D9 SINE Alu 5 119 -1 1 1516 602 199 0 82 chr5 122073490 122073648 -30463611 + B1_Mur4 SINE Alu 1 146 -4 1 1516 545 90 11 0 chr5 122073648 122073737 -30463522 + (TC)n Simple_repeat Simple_repeat 1 90 0 1 1516 894 135 7 0 chr5 122073752 122073893 -30463366 + B2_Mm1t SINE B2 2 143 -50 1 1516 954 131 7 0 chr5 122073911 122074064 -30463195 + B2_Mm2 SINE B2 1 154 -41 1 1516 405 0 0 0 chr5 122074070 122074115 -30463144 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 1 1516 329 336 44 9 chr5 122074302 122074416 -30462843 + PB1 SINE Alu 5 122 -5 1 1516 432 325 24 0 chr5 122074503 122074626 -30462633 - RSINE1 SINE B4 -38 127 2 1 1516 704 234 0 0 chr5 122074649 122074794 -30462465 - B1_Mur2 SINE Alu -1 148 4 1 1516 210 227 43 57 chr5 122074896 122074907 -30462352 + B1_Mm SINE Alu 63 131 -16 1 1516 288 203 0 0 chr5 122074907 122074966 -30462293 + ID_B1 SINE B4 150 208 -16 1 1516 929 218 61 171 chr5 122074978 122075147 -30462112 + RLTR18B LTR ERVK 128 284 -228 1 1516 1027 95 0 20 chr5 122075147 122075297 -30461962 + B1_Mus1 SINE Alu 2 148 0 1 1516 929 218 61 171 chr5 122075297 122075553 -30461706 + RLTR18B LTR ERVK 285 506 -6 1 1516 379 232 40 0 chr5 122075583 122075683 -30461576 - B1F SINE Alu -5 115 3 1 1516 408 204 242 22 chr5 122076396 122076413 -30460846 - ID_B1 SINE B4 -46 246 162 1 1516 638 154 18 0 chr5 122076413 122076523 -30460736 - PB1D9 SINE Alu 0 120 9 1 1516 408 204 242 22 chr5 122076523 122076538 -30460721 - ID_B1 SINE B4 -46 161 72 1 1516 551 235 34 0 chr5 122076564 122076683 -30460576 - RSINE1 SINE B4 -39 126 4 1 1516 562 230 151 0 chr5 122076726 122076865 -30460394 - RSINE1 SINE B4 0 165 6 1 1516 462 268 141 51 chr5 122077673 122077850 -30459409 - B3 SINE B2 -23 193 1 1 1516 285 29 0 0 chr5 122078458 122078492 -30458767 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1516 799 191 76 20 chr5 122078733 122078931 -30458328 - B3 SINE B2 -6 210 2 1 1516 534 218 104 15 chr5 122078952 122079087 -30458172 + B1_Mur2 SINE Alu 1 147 -2 1 1516 481 254 21 48 chr5 122079168 122079313 -30457946 - ID_B1 SINE B4 0 224 84 1 1516 403 224 80 22 chr5 122079348 122079485 -30457774 + B1F2 SINE Alu 1 145 -4 2 1516 333 113 0 0 chr5 122080842 122080880 -30456379 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1516 522 46 0 0 chr5 122080880 122080945 -30456314 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 2 1516 333 113 0 0 chr5 122080945 122080959 -30456300 + (TG)n Simple_repeat Simple_repeat 2 15 0 2 1516 327 340 0 98 chr5 122080964 122080977 -30456282 + ID_B1 SINE B4 76 217 -2 2 1516 592 233 0 83 chr5 122080977 122081122 -30456137 + B1_Mus1 SINE Alu 9 141 -7 2 1516 625 158 125 0 chr5 122081140 122081260 -30455999 + B1_Mur4 SINE Alu 1 135 -15 2 1516 677 163 29 22 chr5 122081969 122082107 -30455152 + B1_Mur3 SINE Alu 9 147 -2 2 1516 232 269 0 0 chr5 122082990 122083057 -30454202 + ID4 SINE ID 1 67 -16 2 1516 873 158 68 0 chr5 122083259 122083436 -30453823 + B2_Mm2 SINE B2 2 190 -5 2 1516 626 195 23 0 chr5 122083563 122083691 -30453568 + B1F2 SINE Alu 3 133 -16 2 1516 261 0 0 0 chr5 122083695 122083724 -30453535 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2 1516 552 276 53 21 chr5 122083724 122083913 -30453346 + B3A SINE B2 3 197 -1 2 1516 543 230 31 8 chr5 122083929 122084056 -30453203 + B1_Mur3 SINE Alu 1 130 -19 2 1516 560 235 52 0 chr5 122084156 122084292 -30452967 + ID_B1 SINE B4 81 223 -1 2 1516 504 48 0 0 chr5 122084459 122084522 -30452737 + (GGA)n Simple_repeat Simple_repeat 3 65 0 2 1516 433 251 126 44 chr5 122085525 122085708 -30451551 + B3A SINE B2 1 198 0 2 1516 1112 82 0 0 chr5 122085983 122086129 -30451130 + B1_Mm SINE Alu 2 147 0 2 1516 390 295 14 28 chr5 122087003 122087146 -30450113 + MER20 DNA MER1_type 2 142 -77 2 1516 234 305 93 0 chr5 122087705 122087823 -30449436 + MIR SINE MIR 6 134 -128 2 1516 1558 47 0 0 chr5 122087836 122088029 -30449230 - B2_Mm1a SINE B2 0 193 1 2 1516 777 188 35 0 chr5 122088091 122088235 -30449024 + B1_Mur3 SINE Alu 1 149 0 2 1516 214 239 53 66 chr5 122088262 122088338 -30448921 + PB1 SINE Alu 51 125 -2 2 1516 192 77 0 0 chr5 122088342 122088368 -30448891 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1516 861 116 8 0 chr5 122088392 122088521 -30448738 + B1_Mur4 SINE Alu 8 137 -13 2 1516 374 229 48 0 chr5 122088534 122088617 -30448642 + ID_B1 SINE B4 84 170 -54 2 1516 1000 106 0 0 chr5 122088638 122088779 -30448480 - B1_Mus1 SINE Alu -7 141 1 2 1516 28 48 0 0 chr5 122088787 122088829 -30448430 + AT_rich Low_complexity Low_complexity 1 42 0 2 1516 377 212 29 29 chr5 122089637 122089739 -30447520 - PB1D7 SINE Alu -1 119 18 2 1516 458 288 145 52 chr5 122089799 122090048 -30447211 - B4 SINE B4 -20 272 1 2 1516 380 222 120 0 chr5 122090066 122090174 -30447085 - B3 SINE B2 -5 211 91 2 1516 1103 62 14 0 chr5 122090458 122090603 -30446656 + B1_Mus2 SINE Alu 1 147 0 2 1516 889 236 44 0 chr5 122090676 122090879 -30446380 - B3 SINE B2 -4 212 1 2 1516 731 264 86 15 chr5 122090897 122091166 -30446093 + B4 SINE B4 1 288 -4 2 1516 454 231 0 55 chr5 122091210 122091320 -30445939 + PB1D10 SINE Alu 13 116 -1 2 1516 356 320 76 22 chr5 122091485 122091670 -30445589 + ID_B1 SINE B4 4 198 -26 2 1516 454 219 51 85 chr5 122091744 122091901 -30445358 + B1_Mur4 SINE Alu 2 150 0 2 1516 582 117 216 0 chr5 122091966 122092077 -30445182 + B1_Mus1 SINE Alu 2 136 -12 2 1516 343 100 9 65 chr5 122092092 122092118 -30445141 + A-rich Low_complexity Low_complexity 2 27 0 2 1516 504 161 118 44 chr5 122092118 122092254 -30445005 + B1_Mur3 SINE Alu 4 149 0 2 1516 343 100 9 65 chr5 122092254 122092334 -30444925 + A-rich Low_complexity Low_complexity 28 101 0 2 1516 409 319 48 54 chr5 122092789 122092955 -30444304 + B4A SINE B4 8 172 -120 2 1516 557 168 19 0 chr5 122092969 122093076 -30444183 + B1_Mur2 SINE Alu 33 141 -8 2 1516 853 240 15 10 chr5 122093066 122093268 -30443991 + B3 SINE B2 14 216 0 2 1516 213 318 35 0 chr5 122093290 122093375 -30443884 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 1516 282 302 94 0 chr5 122093742 122093838 -30443421 + PB1 SINE Alu 11 115 -12 2 1516 476 308 20 20 chr5 122093910 122094059 -30443200 - RSINE1 SINE B4 -15 150 2 2 1516 567 271 82 11 chr5 122094086 122094355 -30442904 + B4 SINE B4 2 289 -3 2 1516 336 203 175 17 chr5 122094420 122094540 -30442719 + ID_B1 SINE B4 78 216 -8 2 1516 475 215 0 11 chr5 122094571 122094665 -30442594 + PB1 SINE Alu 34 126 -1 2 1516 553 235 83 0 chr5 122094746 122094878 -30442381 + B1_Mur1 SINE Alu 1 143 -6 2 1516 930 202 69 25 chr5 122094894 122095097 -30442162 + B3 SINE B2 1 212 -4 2 1516 361 279 19 64 chr5 122095108 122095265 -30441994 + B3 SINE B2 64 213 -3 2 1516 286 260 13 25 chr5 122096324 122096403 -30440856 - ID4 SINE ID 0 83 6 2 1516 894 175 129 5 chr5 122096956 122097157 -30440102 - URR1A DNA MER1_type 0 226 1 2 1516 234 167 83 0 chr5 122097365 122097413 -30439846 + PB1D10 SINE Alu 64 115 -2 2 1516 261 288 50 0 chr5 122098184 122098264 -30438995 - RSINE1 SINE B4 -73 92 9 2 1516 892 163 0 59 chr5 122098429 122098480 -30438779 - B2_Mm2 SINE B2 -4 191 143 2 1516 1205 110 11 6 chr5 122098480 122098663 -30438596 - B2_Mm2 SINE B2 -10 185 2 2 1516 892 163 0 59 chr5 122098663 122098813 -30438446 - B2_Mm2 SINE B2 -53 142 2 2 1516 660 196 113 0 chr5 122098844 122098977 -30438282 + B1_Mur1 SINE Alu 2 149 0 2 1516 693 191 0 0 chr5 122099011 122099137 -30438122 + B1_Mur4 SINE Alu 19 144 -6 2 1516 357 145 0 0 chr5 122099137 122099199 -30438060 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 2 1516 403 304 0 0 chr5 122099704 122099816 -30437443 - PB1 SINE Alu -5 122 11 2 1516 215 61 30 0 chr5 122100255 122100288 -30436971 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 1516 189 0 0 0 chr5 122100287 122100308 -30436951 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1516 781 250 28 0 chr5 122100310 122100486 -30436773 - B3 SINE B2 -34 182 2 2 1516 262 269 221 8 chr5 122100639 122100654 -30436605 - B4A SINE B4 -52 240 169 2 1516 451 208 59 0 chr5 122100654 122100755 -30436504 - PB1D9 SINE Alu -2 118 12 2 1516 262 269 221 8 chr5 122100755 122100770 -30436489 - B4A SINE B4 -52 168 82 2 1516 904 108 0 48 chr5 122101104 122101250 -30436009 + B1_Mur4 SINE Alu 11 149 -1 2 1516 543 273 15 0 chr5 122101262 122101394 -30435865 - RSINE1 SINE B4 -30 135 2 2 1516 361 232 63 0 chr5 122101805 122101900 -30435359 + ID_B1 SINE B4 114 214 -10 2 1516 607 176 69 14 chr5 122102311 122102455 -30434804 - B3A SINE B2 -45 153 2 2 1516 195 152 0 0 chr5 122102595 122102641 -30434618 + T-rich Low_complexity Low_complexity 1 46 0 2 1516 1196 41 0 0 chr5 122102641 122102788 -30434471 - B1_Mus1 SINE Alu 0 148 2 2 1516 325 349 58 34 chr5 122102858 122103063 -30434196 + L1MC LINE L1 5492 5701 -423 2 1516 210 156 0 0 chr5 122103437 122103482 -30433777 + G-rich Low_complexity Low_complexity 1 45 0 2 1516 318 323 16 1 chr5 122103744 122103908 -30433351 - B4 SINE B4 -124 168 2 2 1516 472 292 0 0 chr5 122103966 122104086 -30433173 - B1F SINE Alu -29 120 1 2 1516 1048 52 37 0 chr5 122104233 122104368 -30432891 + B1_Mus2 SINE Alu 2 141 -6 2 1516 255 31 0 0 chr5 122104370 122104402 -30432857 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2 1516 356 222 12 58 chr5 122104412 122104498 -30432761 + B3A SINE B2 1 82 -116 2 1516 238 82 61 0 chr5 122104868 122104917 -30432342 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 2 1516 1547 214 65 37 chr5 122104917 122105300 -30431959 + MTD LTR MaLR 12 405 -14 2 1516 594 119 0 0 chr5 122105420 122105504 -30431755 - B2_Mm2 SINE B2 -110 85 2 2 1516 648 241 133 12 chr5 122105626 122105824 -30431435 - ID_B1 SINE B4 0 224 9 2 1516 299 254 73 60 chr5 122105824 122105975 -30431284 - MIRb SINE MIR -76 192 40 2 1516 842 151 13 20 chr5 122106650 122106799 -30430460 - B1_Mus1 SINE Alu 0 148 1 2 1516 375 305 92 74 chr5 122106889 122107172 -30430087 - ORR1E LTR MaLR 0 359 72 2 1516 316 216 32 112 chr5 122107334 122107459 -30429800 + PB1D7 SINE Alu 5 119 -1 2 1516 344 314 8 75 chr5 122107532 122107666 -30429593 - PB1 SINE Alu -2 125 1 2 1516 227 321 71 0 chr5 122107849 122107933 -30429326 - ID_B1 SINE B4 -108 116 27 2 1516 224 322 34 11 chr5 122108333 122108421 -30428838 + PB1D9 SINE Alu 10 99 -21 2 1516 475 321 54 49 chr5 122108660 122108883 -30428376 + MIRb SINE MIR 12 235 -33 2 1516 462 114 0 0 chr5 122109395 122109465 -30427794 + (TTTC)n Simple_repeat Simple_repeat 4 73 0 2 1516 278 200 0 79 chr5 122109684 122109760 -30427499 + ID_B1 SINE B4 106 175 -49 2 1516 211 170 76 43 chr5 122109825 122109861 -30427398 + A-rich Low_complexity Low_complexity 1 35 0 2 1516 634 188 20 27 chr5 122109861 122110009 -30427250 + B1_Mur4 SINE Alu 2 148 -2 2 1516 211 170 76 43 chr5 122110009 122110064 -30427195 + A-rich Low_complexity Low_complexity 36 95 0 2 1516 256 254 15 30 chr5 122110567 122110701 -30426558 + (CGG)n Simple_repeat Simple_repeat 1 132 0 2 1516 598 293 71 6 chr5 122112280 122112462 -30424797 - ID_B1 SINE B4 -27 197 4 2 1516 32 0 0 0 chr5 122112903 122112935 -30424324 + AT_rich Low_complexity Low_complexity 1 32 0 3 1516 353 207 93 8 chr5 122113078 122113173 -30424086 - B1F SINE Alu -1 116 2 3 1516 225 0 0 0 chr5 122113894 122113919 -30423340 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 3 1516 1212 49 0 0 chr5 122113996 122114139 -30423120 + B1_Mus2 SINE Alu 1 143 -4 3 1516 1192 134 65 0 chr5 122114512 122114713 -30422546 + B3 SINE B2 1 214 -2 3 1516 1642 26 0 25 chr5 122115448 122115645 -30421614 + B2_Mm1a SINE B2 2 193 0 3 1516 369 109 0 0 chr5 122115678 122115733 -30421526 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1516 1248 86 11 22 chr5 122115747 122115925 -30421334 - B2_Mm2 SINE B2 -18 177 2 3 1516 299 130 0 18 chr5 122115925 122115980 -30421279 + (TTTTC)n Simple_repeat Simple_repeat 1 54 0 3 1516 553 238 16 8 chr5 122115980 122116103 -30421156 - B1_Mur1 SINE Alu 0 149 26 3 1516 213 39 0 0 chr5 122116111 122116137 -30421122 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 3 1516 331 250 0 0 chr5 122116151 122116223 -30421036 - tRNA-Arg-CGY_ tRNA tRNA -3 73 2 3 1516 353 280 65 50 chr5 122116342 122116481 -30420778 - B1F SINE Alu -8 141 1 3 1516 435 248 95 0 chr5 122116593 122116698 -30420561 - B3A SINE B2 -45 153 39 3 1516 265 215 25 0 chr5 122116727 122116784 -30420475 + T-rich Low_complexity Low_complexity 24 82 0 3 1516 590 171 148 44 chr5 122116784 122116919 -30420340 - B1_Mur3 SINE Alu 0 149 1 3 1516 265 215 25 0 chr5 122116919 122116940 -30420319 + T-rich Low_complexity Low_complexity 3 23 0 3 1516 681 169 8 25 chr5 122117268 122117389 -30419870 + B1_Mus1 SINE Alu 1 119 -29 3 1516 565 248 82 15 chr5 122117603 122117738 -30419521 - RSINE1 SINE B4 -20 145 2 3 1516 447 280 122 0 chr5 122117804 122117911 -30419348 - RSINE1 SINE B4 -37 128 9 3 1516 533 313 15 0 chr5 122117919 122118053 -30419206 - B1_Mur1 SINE Alu -5 144 9 3 1516 387 268 62 23 chr5 122118080 122118210 -30419049 - B1F SINE Alu 0 149 15 3 1516 302 236 0 147 chr5 122118123 122118232 -30419027 - MT2B2 LTR ERVL -330 254 162 3 1516 681 231 259 67 chr5 122118608 122118984 -30418275 - RMER4B LTR ERVK -137 448 1 3 1516 292 279 0 0 chr5 122118985 122119046 -30418213 - RSINE1 SINE B4 -103 62 2 3 1516 682 85 236 41 chr5 122119255 122119378 -30417881 + B1_Mus1 SINE Alu 1 147 -1 3 1516 979 172 59 20 chr5 122119569 122119771 -30417488 - B3 SINE B2 -6 210 1 3 1516 621 230 6 11 chr5 122119795 122119975 -30417284 + CT-rich Low_complexity Low_complexity 2 180 0 3 1516 416 195 37 0 chr5 122119977 122120059 -30417200 - B1_Mus2 SINE Alu 0 147 63 3 1516 934 201 54 5 chr5 122120509 122120714 -30416545 + B3 SINE B2 2 216 0 3 1516 251 246 98 0 chr5 122121089 122121150 -30416109 - B2_Mm2 SINE B2 -101 94 28 3 1516 897 115 0 23 chr5 122121324 122121457 -30415802 - B1_Mus1 SINE Alu 0 148 19 3 1516 471 257 47 87 chr5 122121330 122121479 -30415780 - B4 SINE B4 -69 223 81 3 1516 1181 91 40 61 chr5 122121490 122121532 -30415727 - B2_Mm2 SINE B2 0 195 165 3 1516 273 109 0 0 chr5 122121532 122121578 -30415681 + (TATG)n Simple_repeat Simple_repeat 2 47 0 3 1516 1181 91 40 61 chr5 122121578 122121733 -30415526 - B2_Mm2 SINE B2 -31 164 2 3 1516 347 325 69 74 chr5 122122277 122122493 -30414766 + L1MB7 LINE L1 5928 6142 -42 3 1516 1320 92 5 21 chr5 122122601 122122789 -30414470 - B2_Mm2 SINE B2 -9 186 2 3 1516 483 272 0 17 chr5 122122820 122122936 -30414323 + PB1D10 SINE Alu 4 117 0 3 1516 827 177 57 0 chr5 122123037 122123178 -30414081 - B1_Mur3 SINE Alu 0 149 1 3 1516 581 197 8 11 chr5 122123181 122123295 -30413964 - B1_Mur4 SINE Alu -21 129 17 3 1516 299 270 115 31 chr5 122123185 122123315 -30413944 - B4A SINE B4 -68 224 84 3 1516 494 232 26 19 chr5 122123460 122123581 -30413678 + B1_Mus1 SINE Alu 1 127 -22 3 1516 570 298 28 21 chr5 122123576 122123720 -30413539 + RSINE1 SINE B4 18 162 -3 3 1516 1090 114 0 0 chr5 122123777 122123926 -30413333 - B1_Mur4 SINE Alu 0 150 2 3 1516 24 32 0 0 chr5 122123928 122123959 -30413300 + AT_rich Low_complexity Low_complexity 1 31 0 3 1516 221 310 0 0 chr5 122123979 122124033 -30413226 + PB1D10 SINE Alu 1 54 -63 3 1516 600 288 12 35 chr5 122124033 122124211 -30413048 + B3 SINE B2 1 173 -25 3 1516 417 122 0 0 chr5 122124211 122124285 -30412974 + (CA)n Simple_repeat Simple_repeat 1 74 0 3 1516 594 309 15 50 chr5 122124285 122124307 -30412952 + B3A SINE B2 174 194 -4 3 1516 969 254 5 10 chr5 122124442 122124649 -30412610 + B3 SINE B2 1 206 -10 3 1516 1100 72 0 42 chr5 122124655 122124799 -30412460 + B1_Mus2 SINE Alu 1 138 -9 3 1516 198 91 0 0 chr5 122124811 122124844 -30412415 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1516 1005 93 168 0 chr5 122124846 122125007 -30412252 + B2_Mm2 SINE B2 1 188 -7 3 1516 287 262 36 72 chr5 122125053 122125164 -30412095 + B1_Mm SINE Alu 41 147 0 3 1516 741 223 23 46 chr5 122125572 122125788 -30411471 - B3 SINE B2 -3 213 3 3 1516 498 233 0 37 chr5 122125865 122125972 -30411287 + B1_Mus2 SINE Alu 45 147 0 3 1516 795 111 25 8 chr5 122125985 122126103 -30411156 + PB1D9 SINE Alu 1 120 0 3 1516 322 265 57 38 chr5 122126194 122126248 -30411011 + B1F1 SINE Alu 1 57 -92 3 1516 3749 9 128 0 chr5 122126248 122126685 -30410574 - MT2_Mm LTR ERVL 0 493 1 3 1516 322 265 57 38 chr5 122126685 122126736 -30410523 + B1F1 SINE Alu 58 108 -41 3 1516 245 250 0 20 chr5 122126963 122127061 -30410198 + CT-rich Low_complexity Low_complexity 3 98 0 3 1516 655 244 66 93 chr5 122127136 122127362 -30409897 + ID_B1 SINE B4 2 221 -3 3 1516 574 294 44 19 chr5 122127366 122127571 -30409688 + B3 SINE B2 1 210 -6 3 1516 368 167 27 27 chr5 122127973 122128047 -30409212 + ID_B1 SINE B4 86 159 -65 3 1516 716 244 0 0 chr5 122128092 122128227 -30409032 + B3A SINE B2 30 164 -34 3 1516 1172 47 0 63 chr5 122128258 122128416 -30408843 + B1_Mus1 SINE Alu 1 148 0 3 1516 665 155 19 0 chr5 122128437 122128540 -30408719 + B1_Mur1 SINE Alu 40 144 -5 3 1516 904 155 7 26 chr5 122129621 122129773 -30407486 + B1_Mur4 SINE Alu 2 150 0 3 1516 376 274 0 59 chr5 122130479 122130580 -30406679 - PB1D10 SINE Alu -18 99 5 3 1516 1152 171 28 14 chr5 122130735 122130948 -30406311 - B3 SINE B2 0 216 1 3 1516 219 311 92 70 chr5 122131052 122131189 -30406070 - PB1D9 SINE Alu -6 143 2 3 1516 283 300 0 0 chr5 122131604 122131664 -30405595 - tRNA-Ala-GCY_ tRNA tRNA -12 63 4 3 1516 1017 241 124 4 chr5 122131841 122132083 -30405176 + B4 SINE B4 13 283 -9 3 1516 689 243 82 11 chr5 122132098 122132281 -30404978 + B3A SINE B2 2 197 -1 3 1516 228 204 85 38 chr5 122132541 122132637 -30404622 - B1_Mur1 SINE Alu -35 114 2 3 1516 1263 48 0 0 chr5 122133040 122133187 -30404072 + B1_Mm SINE Alu 1 147 0 3 1516 380 297 0 21 chr5 122133543 122133636 -30403623 + FAM SINE Alu 143 233 -78 3 1516 751 223 94 30 chr5 122133636 122133839 -30403420 - B3 SINE B2 0 216 1 3 1516 303 256 368 0 chr5 122134651 122134768 -30402491 + RSINE1 SINE B4 2 161 -4 3 1516 243 0 0 0 chr5 122136854 122136881 -30400378 + (CTGGGG)n Simple_repeat Simple_repeat 6 32 0 3 1516 1219 95 0 6 chr5 122137414 122137583 -30399676 - B2_Mm2 SINE B2 -27 168 1 3 1516 646 128 164 23 chr5 122137641 122137769 -30399490 - B1_Mur3 SINE Alu -1 148 3 3 1516 414 0 0 0 chr5 122138005 122138051 -30399208 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1516 775 220 165 38 chr5 122138062 122138298 -30398961 - B4A SINE B4 -22 270 5 3 1516 294 205 186 35 chr5 122138312 122138398 -30398861 - PB1D7 SINE Alu -6 114 16 3 1516 293 219 79 79 chr5 122138422 122138536 -30398723 - PB1D9 SINE Alu -5 115 2 3 1516 440 18 18 0 chr5 122138593 122138650 -30398609 + (TC)n Simple_repeat Simple_repeat 1 58 0 3 1516 846 303 53 42 chr5 122139344 122139627 -30397632 + B4 SINE B4 7 292 0 3 1516 654 211 89 70 chr5 122139661 122139819 -30397440 + B3 SINE B2 23 183 -12 3 1516 1021 16 0 31 chr5 122139813 122139941 -30397318 + B1_Mus1 SINE Alu 24 147 -1 3 1516 868 53 9 9 chr5 122140229 122140344 -30396915 + B2_Mm2 SINE B2 1 115 -80 3 1516 251 273 18 0 chr5 122141140 122141195 -30396064 - RSINE1 SINE B4 -17 148 93 3 1516 1237 54 0 0 chr5 122141396 122141543 -30395716 + B1_Mm SINE Alu 1 147 0 3 1516 216 97 0 0 chr5 122141543 122141574 -30395685 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1516 456 207 210 24 chr5 122141578 122141702 -30395557 + RSINE1 SINE B4 3 149 -16 3 1516 373 317 12 69 chr5 122141712 122141885 -30395374 - RSINE1 SINE B4 0 165 3 3 1516 1202 63 0 0 chr5 122141912 122142054 -30395205 + B1_Mus1 SINE Alu 2 143 -5 3 1516 205 186 0 0 chr5 122142077 122142120 -30395139 + (TAA)n Simple_repeat Simple_repeat 1 43 0 3 1516 1555 43 27 0 chr5 122142747 122142935 -30394324 + B2_Mm1t SINE B2 1 193 0 3 1516 688 210 34 34 chr5 122143165 122143313 -30393946 + B1_Mur3 SINE Alu 2 149 0 3 1516 232 236 218 0 chr5 122143321 122143376 -30393883 + RSINE1 SINE B4 2 68 -97 3 1516 854 112 237 7 chr5 122143476 122143628 -30393631 + B2_Mm2 SINE B2 2 188 -7 3 1516 877 215 66 10 chr5 122143629 122143826 -30393433 + B3 SINE B2 7 214 -2 4 1516 992 122 0 26 chr5 122143929 122144080 -30393179 - B1_Mus1 SINE Alu -1 147 1 4 1516 386 310 26 0 chr5 122144194 122144307 -30392952 + PB1D10 SINE Alu 2 117 0 4 1516 1284 85 26 26 chr5 122144408 122144602 -30392657 + B2_Mm2 SINE B2 2 195 0 4 1516 333 279 105 16 chr5 122144768 122144892 -30392367 + B1F SINE Alu 1 135 -14 4 1516 306 0 0 0 chr5 122145135 122145169 -30392090 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4 1516 586 112 34 101 chr5 122145169 122145288 -30391971 - B2_Mm1t SINE B2 -12 181 71 4 1516 1141 81 37 0 chr5 122145228 122145389 -30391870 + B2_Mm1t SINE B2 27 193 0 4 1516 342 273 0 0 chr5 122145511 122145588 -30391671 + B3A SINE B2 106 182 -16 4 1516 201 233 0 0 chr5 122145617 122145660 -30391599 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1516 505 333 120 41 chr5 122145671 122145732 -30391527 - B4 SINE B4 -4 288 236 4 1516 847 238 38 28 chr5 122145732 122145944 -30391315 - B3 SINE B2 0 216 3 4 1516 505 333 120 41 chr5 122145944 122146148 -30391111 - B4 SINE B4 -57 235 2 4 1516 267 31 0 0 chr5 122146264 122146296 -30390963 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1516 526 289 59 7 chr5 122146307 122146443 -30390816 - RSINE1 SINE B4 -20 145 3 4 1516 373 226 129 0 chr5 122146619 122146712 -30390547 - PB1D10 SINE Alu -9 108 4 4 1516 1100 60 8 0 chr5 122147110 122147243 -30390016 + B1_Mus1 SINE Alu 2 135 -13 4 1516 288 0 0 0 chr5 122147243 122147275 -30389984 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 1516 242 214 71 0 chr5 122147290 122147355 -30389904 - B1F SINE Alu -13 136 28 4 1516 198 0 0 0 chr5 122147373 122147395 -30389864 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1516 1187 95 0 0 chr5 122147395 122147543 -30389716 - B1_Mus1 SINE Alu 0 148 1 4 1516 226 298 112 17 chr5 122147735 122147851 -30389408 - MIRb SINE MIR -90 178 52 4 1516 910 103 0 0 chr5 122148046 122148172 -30389087 + B1_Mus1 SINE Alu 2 127 -21 4 1516 1183 121 28 0 chr5 122148165 122148347 -30388912 + B2_Mm2 SINE B2 9 195 0 4 1516 379 257 129 0 chr5 122148363 122148464 -30388795 + PB1D10 SINE Alu 1 114 -3 4 1516 555 157 0 0 chr5 122148464 122148572 -30388687 + (CA)n Simple_repeat Simple_repeat 1 108 0 4 1516 1781 129 46 109 chr5 122148775 122148849 -30388410 - ORR1A3 LTR MaLR 0 326 281 4 1516 1105 83 7 27 chr5 122148849 122148998 -30388261 - B1_Mus2 SINE Alu 0 147 2 4 1516 1781 129 46 109 chr5 122148998 122149271 -30387988 - ORR1A3 LTR MaLR -46 280 1 4 1516 604 164 8 79 chr5 122149283 122149409 -30387850 - B1_Mur4 SINE Alu 0 150 34 4 1516 677 205 249 12 chr5 122149519 122149692 -30387567 + B3 SINE B2 3 216 0 4 1516 333 159 80 40 chr5 122149712 122149863 -30387396 + (TTATA)n Simple_repeat Simple_repeat 2 158 0 4 1516 550 208 132 8 chr5 122149941 122150062 -30387197 - ID_B1 SINE B4 -9 215 80 4 1516 596 240 62 0 chr5 122150084 122150230 -30387029 - RSINE1 SINE B4 -9 156 2 4 1516 320 241 104 61 chr5 122150247 122150362 -30386897 - PB1D9 SINE Alu 0 120 1 4 1516 251 303 97 44 chr5 122150372 122150486 -30386773 - PB1 SINE Alu -7 120 1 4 1516 397 267 46 28 chr5 122151087 122151195 -30386064 - PB1D10 SINE Alu -1 116 7 4 1516 434 204 301 24 chr5 122151213 122151379 -30385880 - ID_B1 SINE B4 -10 214 3 4 1516 271 271 135 0 chr5 122151384 122151480 -30385779 - L1MB5 LINE L1 -36 6138 6030 4 1516 236 296 17 77 chr5 122151660 122151777 -30385482 - L1MD LINE L1 -2190 5805 5696 4 1516 896 130 11 22 chr5 122151964 122151977 -30385282 + polypyrimidine Low_complexity Low_complexity 168 180 0 4 1516 459 0 0 0 chr5 122151977 122152028 -30385231 + (TTCCC)n Simple_repeat Simple_repeat 1 51 0 4 1516 896 130 11 22 chr5 122152028 122152195 -30385064 + CT-rich Low_complexity Low_complexity 2 167 0 4 1516 259 27 0 51 chr5 122152205 122152244 -30385015 - B1_Mus2 SINE Alu 0 147 111 4 1516 370 305 41 25 chr5 122152474 122152595 -30384664 - ID_B1 SINE B4 0 224 102 4 1516 197 33 33 0 chr5 122152608 122152638 -30384621 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1516 1608 38 0 0 chr5 122152638 122152823 -30384436 - B2_Mm1a SINE B2 -8 185 1 4 1516 30 0 0 0 chr5 122152830 122152860 -30384399 + AT_rich Low_complexity Low_complexity 1 30 0 4 1516 1147 83 0 0 chr5 122152860 122153005 -30384254 - B1_Mm SINE Alu -2 145 1 4 1516 636 258 61 56 chr5 122153010 122153207 -30384052 - B3A SINE B2 0 198 1 4 1516 339 216 63 74 chr5 122153294 122153389 -30383870 + B1F1 SINE Alu 23 148 -1 4 1516 251 200 0 130 chr5 122153409 122153478 -30383781 - B1_Mus1 SINE Alu -88 60 1 4 1516 261 0 0 0 chr5 122153489 122153518 -30383741 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1516 329 339 97 0 chr5 122153534 122153658 -30383601 - RSINE1 SINE B4 -28 137 2 4 1516 400 276 29 96 chr5 122153660 122153796 -30383463 - ID_B1 SINE B4 -1 223 97 4 1516 614 294 0 82 chr5 122153783 122153979 -30383280 - B3A SINE B2 -15 183 4 4 1516 1082 66 0 0 chr5 122154018 122154154 -30383105 - B1_Mus2 SINE Alu -11 136 1 4 1516 283 276 8 0 chr5 122154047 122154171 -30383088 - ORR1B1-int LTR MaLR -755 754 630 4 1516 268 227 212 0 chr5 122154171 122154237 -30383022 + B1_Mur4 SINE Alu 3 82 -68 4 1516 306 353 51 8 chr5 122154294 122154411 -30382848 + B4 SINE B4 77 198 -94 4 1516 448 279 10 4 chr5 122154310 122154423 -30382836 + B1_Mur1 SINE Alu 8 117 -30 4 1516 234 91 0 0 chr5 122154739 122154772 -30382487 + (CCCCG)n Simple_repeat Simple_repeat 2 34 0 4 1516 561 209 27 9 chr5 122155366 122155477 -30381782 - PB1D9 SINE Alu -6 114 2 4 1516 29 47 0 0 chr5 122155542 122155585 -30381674 + AT_rich Low_complexity Low_complexity 1 43 0 4 1516 192 77 0 0 chr5 122155585 122155611 -30381648 + (TG)n Simple_repeat Simple_repeat 1 26 0 4 1516 317 315 0 22 chr5 122155639 122155730 -30381529 - RSINE1 SINE B4 -63 102 14 4 1516 1221 62 0 0 chr5 122155747 122155893 -30381366 - B1_Mus1 SINE Alu 0 148 3 4 1516 241 114 0 0 chr5 122155939 122155974 -30381285 + B1_Mur4 SINE Alu 108 142 -8 4 1516 565 218 75 42 chr5 122155991 122156166 -30381093 - B3 SINE B2 -11 205 47 4 1516 465 19 0 0 chr5 122156245 122156299 -30380960 + (TTCTC)n Simple_repeat Simple_repeat 4 57 0 4 1516 362 183 182 68 chr5 122156299 122156379 -30380880 - B1_Mus2 SINE Alu -12 105 15 4 1516 506 143 61 10 chr5 122156402 122156501 -30380758 - B2_Mm2 SINE B2 0 195 92 4 1516 1157 64 83 0 chr5 122156502 122156658 -30380601 - B2_Mm2 SINE B2 -25 170 2 4 1516 422 274 8 17 chr5 122156689 122156808 -30380451 + PB1D9 SINE Alu 3 120 0 4 1516 188 103 51 0 chr5 122156812 122156851 -30380408 + A-rich Low_complexity Low_complexity 2 42 0 4 1516 1203 68 0 0 chr5 122156874 122157017 -30380242 + B1_Mus1 SINE Alu 1 143 -5 4 1516 207 88 0 0 chr5 122157017 122157051 -30380208 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 4 1516 1053 43 107 0 chr5 122157073 122157213 -30380046 + B2_Mm2 SINE B2 2 156 -39 4 1516 372 22 0 0 chr5 122157214 122157259 -30380000 + (CATA)n Simple_repeat Simple_repeat 4 48 0 4 1516 1149 43 14 0 chr5 122157283 122157423 -30379836 + B1_Mus1 SINE Alu 1 142 -6 4 1516 276 53 0 0 chr5 122157423 122157461 -30379798 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 4 1516 528 325 13 0 chr5 122157618 122157769 -30379490 + RSINE1 SINE B4 13 165 0 4 1516 395 264 100 75 chr5 122158074 122158146 -30379113 + B4 SINE B4 10 96 -196 4 1516 1493 44 39 6 chr5 122158146 122158328 -30378931 + B2_Mm1t SINE B2 1 188 -5 4 1516 438 209 3 14 chr5 122158329 122158442 -30378817 + B1_Mur4 SINE Alu 2 112 -37 4 1516 395 259 390 42 chr5 122158442 122158481 -30378778 + B4 SINE B4 98 290 -2 4 1516 262 320 121 16 chr5 122158499 122158623 -30378636 - MLT1F1 LTR MaLR -106 463 327 4 1516 324 259 108 27 chr5 122158696 122158807 -30378452 - RSINE1 SINE B4 0 165 46 4 189 890 219 25 55 chr5 122158968 122159189 -30378070 + B3 SINE B2 1 194 -1 4 1517 771 194 199 6 chr5 122159196 122159377 -30377882 + B3 SINE B2 1 216 0 4 1517 1038 101 0 0 chr5 122159482 122159621 -30377638 - B1_Mus1 SINE Alu -9 139 1 4 1517 355 277 72 58 chr5 122159662 122159800 -30377459 - ID_B1 SINE B4 -4 220 81 4 1517 473 171 118 45 chr5 122160110 122160220 -30377039 + PB1D9 SINE Alu 2 119 -1 4 1517 305 331 21 14 chr5 122160270 122160411 -30376848 - RSINE1 SINE B4 -19 146 5 4 1517 331 179 103 0 chr5 122160430 122160508 -30376751 - B1_Mur2 SINE Alu -55 94 9 4 1517 239 200 76 51 chr5 122160446 122160525 -30376734 - MT2B LTR ERVL -369 232 152 4 1517 602 230 29 7 chr5 122160536 122160672 -30376587 - ID_B1 SINE B4 -7 217 79 4 1517 236 248 25 32 chr5 122161690 122161848 -30375411 + (CCGCG)n Simple_repeat Simple_repeat 1 157 0 4 1517 33 66 0 0 chr5 122161955 122162016 -30375243 + GC_rich Low_complexity Low_complexity 1 61 0 4 1517 23 33 0 0 chr5 122162167 122162197 -30375062 + GC_rich Low_complexity Low_complexity 1 30 0 4 1517 23 33 0 0 chr5 122162248 122162278 -30374981 + GC_rich Low_complexity Low_complexity 1 30 0 4 1517 21 57 0 0 chr5 122162385 122162420 -30374839 + GC_rich Low_complexity Low_complexity 1 35 0 4 1517 306 273 0 38 chr5 122164413 122164426 -30372833 + RSINE1 SINE B4 69 81 -84 4 1517 311 0 0 25 chr5 122164426 122164466 -30372793 + (CCA)n Simple_repeat Simple_repeat 2 40 0 4 1517 306 273 0 38 chr5 122164466 122164532 -30372727 + RSINE1 SINE B4 82 144 -21 4 1517 1382 86 32 0 chr5 122164823 122165009 -30372250 + B2_Mm1a SINE B2 2 193 0 5 1517 207 0 0 0 chr5 122165114 122165137 -30372122 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1517 551 237 182 22 chr5 122165501 122165682 -30371577 - B3 SINE B2 -6 210 1 5 1517 694 207 91 6 chr5 122165713 122165878 -30371381 - B3 SINE B2 -3 213 35 5 1517 471 213 43 0 chr5 122165879 122165973 -30371286 + B1_Mur2 SINE Alu 2 99 -50 5 1517 470 179 0 0 chr5 122166208 122166292 -30370967 + 4.5SRNA scRNA scRNA 6 89 -5 5 1517 266 302 92 0 chr5 122166292 122166324 -30370935 + MT2B2 LTR ERVL 161 287 -297 5 1517 444 190 77 39 chr5 122166304 122166408 -30370851 + PB1D9 SINE Alu 11 118 -2 5 1517 872 225 0 17 chr5 122166416 122166588 -30370671 - B3 SINE B2 -42 174 6 5 1517 458 261 102 34 chr5 122166638 122166785 -30370474 - ID_B1 SINE B4 -67 157 1 5 1517 348 278 89 40 chr5 122167003 122167205 -30370054 - B3 SINE B2 0 216 5 5 1517 424 252 8 42 chr5 122167230 122167350 -30369909 - B1_Mur2 SINE Alu 0 149 34 5 1517 543 153 173 24 chr5 122167392 122167519 -30369740 - B1_Mus1 SINE Alu -2 146 1 5 1517 736 192 254 6 chr5 122167714 122167887 -30369372 + B3 SINE B2 1 216 0 5 1517 270 310 114 82 chr5 122167921 122168079 -30369180 - RSINE1 SINE B4 0 165 3 5 1517 828 91 33 0 chr5 122168104 122168225 -30369034 + B1_Mus1 SINE Alu 24 148 0 5 1517 323 356 40 63 chr5 122169471 122169615 -30367644 + ID_B1 SINE B4 1 217 -7 5 1517 447 179 0 0 chr5 122169615 122169693 -30367566 + B1_Mur1 SINE Alu 65 142 -7 5 1517 302 0 26 0 chr5 122170303 122170341 -30366918 + (TA)n Simple_repeat Simple_repeat 2 40 0 5 1517 322 242 217 0 chr5 122170496 122170616 -30366643 + B1_Mur1 SINE Alu 4 149 0 5 1517 778 207 165 16 chr5 122170786 122170968 -30366291 - B3 SINE B2 -7 209 1 5 1517 693 230 27 53 chr5 122171033 122171221 -30366038 - B3A SINE B2 -15 183 1 5 1517 1296 27 0 0 chr5 122171608 122171755 -30365504 - B1_Mus2 SINE Alu 0 147 1 5 1517 261 300 147 48 chr5 122171931 122172162 -30365097 + Tigger15a DNA TcMar 287 540 -175 5 1517 532 227 43 43 chr5 122172240 122172378 -30364881 - B1_Mur1 SINE Alu -10 139 2 5 1517 248 283 37 83 chr5 122172282 122172390 -30364869 - MT2B LTR ERVL -345 256 154 5 1517 1751 249 38 5 chr5 122172445 122172889 -30364370 - Lx8 LINE L1 -339 7134 6676 5 1517 1212 55 7 0 chr5 122173663 122173809 -30363450 - B1_Mus2 SINE Alu 0 147 1 5 1517 26 30 0 0 chr5 122174229 122174262 -30362997 + AT_rich Low_complexity Low_complexity 1 33 0 5 1517 484 184 48 10 chr5 122174266 122174370 -30362889 - B1_Mur2 SINE Alu 0 149 42 5 1517 407 267 195 11 chr5 122174377 122174542 -30362717 - B3A SINE B2 -14 181 1 5 1517 942 176 106 11 chr5 122174973 122175162 -30362097 + B3 SINE B2 5 211 -5 5 1517 181 234 128 13 chr5 122175392 122175470 -30361789 - L2b LINE L2 -48 3327 3241 5 1517 902 163 146 0 chr5 122175765 122175943 -30361316 + B3 SINE B2 2 205 -11 5 1517 1145 55 178 0 chr5 122176031 122176049 -30361210 - B2_Mm1t SINE B2 0 193 176 5 1517 185 0 40 0 chr5 122176049 122176074 -30361185 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 1517 1145 55 178 0 chr5 122176074 122176218 -30361041 - B2_Mm1t SINE B2 -18 175 3 5 1517 1737 21 0 0 chr5 122176220 122176412 -30360847 - B2_Mm1a SINE B2 -1 192 1 5 1517 21 57 0 0 chr5 122176421 122176456 -30360803 + AT_rich Low_complexity Low_complexity 1 35 0 5 1517 297 176 14 0 chr5 122176463 122176528 -30360731 - B2_Mm2 SINE B2 -82 116 46 5 1517 843 147 147 0 chr5 122176562 122176718 -30360541 - B2_Mm1t SINE B2 -14 179 1 5 1517 423 304 48 37 chr5 122176719 122176907 -30360352 + L1M3 LINE L1 4210 4399 -1741 5 1517 1220 54 0 0 chr5 122177055 122177202 -30360057 - B1_Mus2 SINE Alu 0 147 1 5 1517 412 172 253 0 chr5 122177405 122177492 -30359767 - PB1D10 SINE Alu -8 109 1 5 1517 458 222 145 0 chr5 122177524 122177641 -30359618 - B1_Mus1 SINE Alu -11 137 4 5 1517 377 180 0 0 chr5 122178026 122178087 -30359172 + RSINE1 SINE B4 83 143 -22 5 1517 502 216 70 51 chr5 122178136 122178292 -30358967 + RSINE1 SINE B4 3 161 -4 5 1517 610 196 15 14 chr5 122178298 122178439 -30358820 - B1_Mus2 SINE Alu -1 146 1 5 1517 497 208 0 40 chr5 122178461 122178561 -30358698 + B3 SINE B2 9 104 -112 5 1517 269 281 58 50 chr5 122178655 122178775 -30358484 - MER3 DNA MER1_type -88 121 1 5 1517 437 313 37 0 chr5 122179157 122179291 -30357968 - B4A SINE B4 -152 140 2 5 1517 392 293 56 21 chr5 122179449 122179592 -30357667 + B1F1 SINE Alu 2 149 0 5 1517 235 266 10 87 chr5 122179602 122179705 -30357554 + PB1D7 SINE Alu 19 113 -7 5 1517 570 183 8 42 chr5 122180030 122180150 -30357109 + B1_Mur3 SINE Alu 34 149 0 5 1517 678 276 20 35 chr5 122180390 122180589 -30356670 - B4A SINE B4 -79 213 18 5 1517 1011 64 28 14 chr5 122180707 122180849 -30356410 + B1_Mur4 SINE Alu 5 148 -2 5 1517 472 237 101 58 chr5 122181153 122181292 -30355967 - B1_Mur3 SINE Alu -4 145 1 5 1517 315 233 144 23 chr5 122181294 122181426 -30355833 - L1M4c LINE L1 -5208 1800 1653 5 1517 630 237 22 28 chr5 122181462 122181644 -30355615 - B3 SINE B2 -34 182 2 5 1517 414 175 202 10 chr5 122181681 122181785 -30355474 - B1_Mur1 SINE Alu -8 141 18 5 1517 248 294 15 0 chr5 122181904 122181972 -30355287 - RSINE1 SINE B4 -90 75 7 5 1517 299 230 78 17 chr5 122182296 122182411 -30354848 - L1M4c LINE L1 -5880 1454 1333 5 1517 22 0 0 0 chr5 122182670 122182692 -30354567 + AT_rich Low_complexity Low_complexity 1 22 0 5 1517 747 196 28 14 chr5 122182822 122182967 -30354292 - B1_Mur3 SINE Alu -1 148 2 5 1517 25 0 0 0 chr5 122183230 122183255 -30354004 + AT_rich Low_complexity Low_complexity 1 25 0 5 1517 198 0 0 0 chr5 122183347 122183369 -30353890 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1517 809 239 23 0 chr5 122183374 122183550 -30353709 - B3 SINE B2 -9 207 28 5 1517 239 233 0 32 chr5 122183565 122183627 -30353632 - B3 SINE B2 -6 210 151 5 1517 208 143 0 0 chr5 122183657 122183692 -30353567 + (T)n Simple_repeat Simple_repeat 1 35 0 5 1517 1189 61 0 0 chr5 122183692 122183839 -30353420 - B1_Mus2 SINE Alu 0 147 1 5 1517 653 200 186 6 chr5 122184168 122184324 -30352935 - B3A SINE B2 -13 185 2 5 1517 230 278 108 27 chr5 122184381 122184529 -30352730 - L1M3 LINE L1 -421 5762 5603 5 1517 1300 245 62 74 chr5 122185106 122185618 -30351641 - Lx8 LINE L1 -628 6845 6340 5 1517 297 0 0 0 chr5 122185639 122185672 -30351587 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1517 234 81 0 0 chr5 122185672 122185709 -30351550 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 5 1517 207 100 0 0 chr5 122185709 122185738 -30351521 + (ACTG)n Simple_repeat Simple_repeat 3 32 0 5 1517 1515 64 11 0 chr5 122185783 122185971 -30351288 - B2_Mm1t SINE B2 -2 191 2 5 1517 1179 75 0 0 chr5 122186293 122186439 -30350820 + B1_Mus2 SINE Alu 2 147 0 5 1517 549 276 21 7 chr5 122186447 122186589 -30350670 - ID_B1 SINE B4 0 224 81 5 1517 406 243 92 66 chr5 122186594 122186777 -30350482 - B3A SINE B2 -1 192 9 5 1517 228 179 89 13 chr5 122186800 122186879 -30350380 + T-rich Low_complexity Low_complexity 5 89 0 5 1517 1153 80 110 0 chr5 122186998 122187161 -30350098 + B2_Mm2 SINE B2 1 181 -14 5 1517 918 94 14 7 chr5 122187301 122187440 -30349819 + B1_Mus2 SINE Alu 8 147 0 5 1517 195 42 0 0 chr5 122187445 122187469 -30349790 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1517 422 300 17 43 chr5 122187525 122187641 -30349618 - B1_Mus1 SINE Alu 0 120 9 5 1517 237 328 15 0 chr5 122187583 122187650 -30349609 - B4A SINE B4 -142 150 83 5 1517 730 109 0 0 chr5 122187666 122187776 -30349483 - B1_Mus1 SINE Alu 0 148 39 5 1517 234 0 0 0 chr5 122187793 122187819 -30349440 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1517 566 185 111 0 chr5 122187823 122187958 -30349301 - B3 SINE B2 -66 150 1 5 1517 226 248 189 70 chr5 122188010 122188025 -30349234 - B3A SINE B2 -27 171 12 5 1517 597 211 23 0 chr5 122188025 122188153 -30349106 - RSINE1 SINE B4 -22 143 13 5 1517 29 28 0 0 chr5 122188161 122188197 -30349062 + AT_rich Low_complexity Low_complexity 1 36 0 5 1517 520 146 0 0 chr5 122188214 122188296 -30348963 - B2_Mm2 SINE B2 -113 82 1 5 1517 22 0 0 0 chr5 122188389 122188411 -30348848 + AT_rich Low_complexity Low_complexity 1 22 0 5 1517 243 0 0 0 chr5 122188438 122188465 -30348794 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1517 1653 11 21 0 chr5 122188467 122188654 -30348605 - B2_Mm1a SINE B2 -1 192 2 5 1517 320 261 122 0 chr5 122188755 122188870 -30348389 - L1MC5 LINE L1 -67 7894 7766 5 1517 480 262 51 34 chr5 122188931 122189109 -30348150 - B3A SINE B2 -16 182 2 5 1517 744 12 0 0 chr5 122189119 122189204 -30348055 + (TTTCC)n Simple_repeat Simple_repeat 4 88 0 5 1517 457 193 94 119 chr5 122189245 122189404 -30347855 - RSINE1 SINE B4 -2 163 9 5 1517 583 261 82 5 chr5 122189805 122190001 -30347258 + ID_B1 SINE B4 2 212 -12 5 1517 769 205 43 39 chr5 122190033 122190241 -30347018 + URR1B DNA MER1_type 17 225 0 5 1517 491 186 248 0 chr5 122190638 122190751 -30346508 - B1_Mur2 SINE Alu -8 141 1 6 1517 669 77 19 9 chr5 122190869 122190974 -30346285 - B1_Mur3 SINE Alu 0 149 44 6 1517 559 243 67 83 chr5 122190999 122191192 -30346067 - B3A SINE B2 0 198 9 6 1517 469 231 19 9 chr5 122191209 122191314 -30345945 - B1_Mur2 SINE Alu -7 142 37 6 1517 5201 164 136 22 chr5 122191341 122192499 -30344760 - Lx9 LINE L1 -1 7643 6355 6 1517 449 219 84 0 chr5 122192643 122192762 -30344497 - B1_Mur2 SINE Alu -1 148 20 6 1517 408 149 15 0 chr5 122192771 122192838 -30344421 - Lx9 LINE L1 -1672 5972 5905 6 1517 247 311 13 13 chr5 122192842 122192917 -30344342 - ID_B1 SINE B4 -98 126 52 6 1517 302 0 26 0 chr5 122193226 122193264 -30343995 + (CCCCCT)n Simple_repeat Simple_repeat 3 41 0 6 1517 572 40 13 0 chr5 122193268 122193343 -30343916 + (TTTTC)n Simple_repeat Simple_repeat 1 76 0 6 1517 498 233 33 8 chr5 122193357 122193478 -30343781 - RSINE1 SINE B4 -36 129 6 6 1517 857 249 30 5 chr5 122193747 122193949 -30343310 + B3 SINE B2 2 208 -8 6 1517 297 245 157 0 chr5 122194250 122194352 -30342907 + MER2 DNA MER2_type 225 342 -3 6 1517 265 151 206 0 chr5 122194705 122194778 -30342481 - PB1D7 SINE Alu -29 91 4 6 1517 315 65 0 0 chr5 122194866 122194912 -30342347 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1517 328 223 134 80 chr5 122194926 122195038 -30342221 - RSINE1 SINE B4 -36 129 12 6 1517 240 280 60 0 chr5 122195231 122195331 -30341928 - PB1D7 SINE Alu -12 108 3 6 1517 263 198 31 122 chr5 122195365 122195463 -30341796 - B1_Mur2 SINE Alu 0 149 61 6 1517 24 0 0 0 chr5 122195675 122195699 -30341560 + AT_rich Low_complexity Low_complexity 1 24 0 6 1517 730 167 50 7 chr5 122196196 122196335 -30340924 - B1_Mur4 SINE Alu 0 150 6 6 1517 533 167 10 19 chr5 122196341 122196445 -30340814 - B1_Mur1 SINE Alu -1 148 46 6 1517 251 222 95 0 chr5 122196835 122196898 -30340361 - RSINE1 SINE B4 -95 70 2 6 1517 198 0 0 0 chr5 122196908 122196930 -30340329 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1517 596 252 7 7 chr5 122196930 122197070 -30340189 - B1_Mur1 SINE Alu -9 140 1 6 1517 189 0 0 0 chr5 122198157 122198178 -30339081 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1517 3257 31 26 8 chr5 122198244 122198633 -30338626 + MTA_Mm LTR MaLR 1 396 0 6 1517 1140 83 0 0 chr5 122198711 122198856 -30338403 - B1_Mus1 SINE Alu -2 146 2 6 1517 27 49 0 0 chr5 122199045 122199086 -30338173 + AT_rich Low_complexity Low_complexity 1 41 0 6 1517 352 175 0 0 chr5 122199336 122199399 -30337860 - PB1D10 SINE Alu -13 104 42 6 1517 563 223 28 14 chr5 122199599 122199740 -30337519 - B3 SINE B2 -4 212 70 6 1517 287 238 75 0 chr5 122200213 122200293 -30336966 - PB1D9 SINE Alu -34 86 1 6 1517 232 307 80 0 chr5 122200728 122200803 -30336456 - ID4 SINE ID -2 81 1 6 1517 410 164 211 0 chr5 122200840 122200944 -30336315 - B1_Mur3 SINE Alu -19 130 5 6 1517 900 65 224 19 chr5 122200983 122201139 -30336120 - B2_Mm2 SINE B2 -4 191 4 6 1517 226 277 98 10 chr5 122201156 122201258 -30336001 - PB1D7 SINE Alu -7 113 3 6 1517 231 313 58 48 chr5 122201258 122201293 -30335966 - B4A SINE B4 -207 85 50 6 1517 521 128 23 0 chr5 122201401 122201487 -30335772 + B1_Mus2 SINE Alu 41 128 -19 6 1517 443 294 71 38 chr5 122201644 122201856 -30335403 - B4 SINE B4 -13 279 61 6 1517 502 207 99 0 chr5 122201986 122202097 -30335162 - B1_Mus2 SINE Alu 0 147 26 6 1517 185 0 40 0 chr5 122202337 122202362 -30334897 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 6 1517 255 31 0 0 chr5 122202362 122202394 -30334865 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 6 1517 1560 39 0 0 chr5 122202394 122202572 -30334687 - B2_Mm1a SINE B2 -14 179 2 6 1517 766 46 55 0 chr5 122202575 122202684 -30334575 - B1_Mm SINE Alu 0 147 33 6 1517 646 252 50 6 chr5 122202742 122202902 -30334357 + B3 SINE B2 29 195 -21 6 1517 353 188 168 56 chr5 122203248 122203355 -30333904 + PB1D7 SINE Alu 1 119 -1 6 1517 532 271 130 38 chr5 122203399 122203583 -30333676 + B3 SINE B2 2 202 -14 6 1517 252 0 0 0 chr5 122203585 122203613 -30333646 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1517 1812 123 3 3 chr5 122203615 122203900 -30333359 + ORR1A2 LTR MaLR 1 285 -42 6 1517 1107 79 0 0 chr5 122203900 122204052 -30333207 + B2_Mm2 SINE B2 1 152 -43 6 1517 400 62 31 0 chr5 122204052 122204116 -30333143 + (TA)n Simple_repeat Simple_repeat 1 66 0 6 1517 388 58 0 0 chr5 122204119 122204171 -30333088 + ORR1A2 LTR MaLR 272 323 -3 6 1517 436 260 79 24 chr5 122204310 122204436 -30332823 + RSINE1 SINE B4 4 136 -29 6 1517 626 196 79 50 chr5 122204509 122204649 -30332610 + B1_Mur2 SINE Alu 1 144 -5 6 1517 307 259 191 18 chr5 122204691 122204801 -30332458 - B3 SINE B2 -86 130 2 6 1517 295 296 9 53 chr5 122205023 122205137 -30332122 + PB1D10 SINE Alu 7 115 -2 6 1517 183 156 0 0 chr5 122205198 122205230 -30332029 + T-rich Low_complexity Low_complexity 1 32 0 6 1517 556 263 19 13 chr5 122205406 122205560 -30331699 - RSINE1 SINE B4 0 165 11 6 1517 322 173 52 26 chr5 122205593 122205670 -30331589 + PB1D9 SINE Alu 29 107 -13 6 1517 476 86 84 3 chr5 122205685 122205775 -30331484 - B1_Mus2 SINE Alu 0 147 1 6 1517 910 226 24 5 chr5 122205813 122206022 -30331237 - B3 SINE B2 0 216 4 6 1517 966 144 74 11 chr5 122206048 122206224 -30331035 + B2_Mm2 SINE B2 1 187 -8 6 1517 721 240 34 20 chr5 122206226 122206430 -30330829 - B3 SINE B2 -9 207 1 6 1517 317 258 10 20 chr5 122206583 122206682 -30330577 - ID_B1 SINE B4 -26 198 101 6 1517 411 268 70 1 chr5 122206791 122206943 -30330316 - B3 SINE B2 -6 210 48 6 1517 415 282 49 76 chr5 122207041 122207225 -30330034 - B4A SINE B4 -112 180 2 6 1517 400 309 63 58 chr5 122207261 122207335 -30329924 - B4A SINE B4 -2 290 101 6 1517 538 148 165 0 chr5 122207335 122207450 -30329809 - B1F2 SINE Alu 0 149 16 6 1517 659 230 143 0 chr5 122207447 122207664 -30329595 - B4A SINE B4 -43 249 2 6 1517 1236 54 0 0 chr5 122207696 122207843 -30329416 + B1_Mus2 SINE Alu 1 147 0 6 1517 431 265 0 89 chr5 122209334 122209458 -30327801 - PB1D7 SINE Alu 0 120 8 6 1517 217 241 69 0 chr5 122209406 122209464 -30327795 - B4A SINE B4 -148 144 83 6 1517 1244 34 0 0 chr5 122209585 122209731 -30327528 - B1_Mus1 SINE Alu -2 146 1 6 1517 1021 85 125 24 chr5 122209742 122209910 -30327349 - B2_Mm2 SINE B2 -9 186 2 6 1517 337 303 132 29 chr5 122209962 122210166 -30327093 + B4A SINE B4 2 226 -66 6 1517 328 358 60 30 chr5 122210624 122210791 -30326468 - RMER15 LTR ERVL -102 473 302 6 1517 1197 162 22 22 chr5 122210908 122211135 -30326124 - ORR1C1 LTR MaLR -5 373 147 6 1517 231 366 96 27 chr5 122211401 122211547 -30325712 - RSINE1 SINE B4 -4 161 6 6 1517 529 299 31 62 chr5 122212223 122212483 -30324776 + MTD LTR MaLR 45 296 -123 6 1517 402 279 4 11 chr5 122212638 122212747 -30324512 + RSINE1 SINE B4 8 111 -181 6 1517 489 253 131 11 chr5 122213024 122213200 -30324059 - B3A SINE B2 0 198 2 6 1517 312 27 0 0 chr5 122214150 122214187 -30323072 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 6 1517 1168 124 10 49 chr5 122214187 122214390 -30322869 - B2_Mm2 SINE B2 0 195 1 6 1517 249 157 171 0 chr5 122214401 122214471 -30322788 - B1_Mus2 SINE Alu 0 147 66 6 1517 640 194 53 73 chr5 122214631 122214781 -30322478 - B1_Mur1 SINE Alu 0 149 3 6 1517 332 197 30 0 chr5 122214809 122214875 -30322384 - B1_Mur4 SINE Alu -8 142 75 6 1517 600 254 69 6 chr5 122214892 122215066 -30322193 - B3A SINE B2 -13 185 1 6 1517 628 237 118 5 chr5 122215216 122215403 -30321856 + B3 SINE B2 4 211 -5 6 1517 414 241 115 20 chr5 122215523 122215671 -30321588 - B3 SINE B2 -25 191 30 6 1517 330 252 87 10 chr5 122215697 122215801 -30321458 - PB1D9 SINE Alu -7 113 2 6 1517 819 241 11 5 chr5 122216514 122216702 -30320557 - B3 SINE B2 -27 189 1 6 1517 453 169 0 0 chr5 122216852 122216935 -30320324 + (TA)n Simple_repeat Simple_repeat 2 84 0 6 1517 1386 78 0 35 chr5 122218059 122218258 -30319001 - B2_Mm2 SINE B2 -3 192 1 6 1517 509 230 23 47 chr5 122218659 122218787 -30318472 - B1_Mus1 SINE Alu -23 125 1 6 1517 318 255 19 67 chr5 122218860 122218965 -30318294 - B3 SINE B2 -116 100 1 6 1517 318 377 0 14 chr5 122218977 122219117 -30318142 - ID_B1 SINE B4 -4 220 83 6 1517 295 269 88 38 chr5 122219323 122219449 -30317810 + B1F SINE Alu 1 148 -1 6 1517 546 225 71 21 chr5 122219452 122219593 -30317666 + B1_Mus1 SINE Alu 1 148 0 6 1517 255 93 0 0 chr5 122219864 122219907 -30317352 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1517 1755 172 88 11 chr5 122220005 122220369 -30316890 - RLTR17 LTR ERVK -98 594 203 6 1517 402 67 0 0 chr5 122220369 122220429 -30316830 - BGLII_B LTR ERVK -381 60 1 6 1517 248 288 12 12 chr5 122220679 122220760 -30316499 + CT-rich Low_complexity Low_complexity 2 82 0 6 1517 526 111 33 0 chr5 122221155 122221245 -30316014 - B2_Mm2 SINE B2 0 195 103 6 1517 1372 68 45 0 chr5 122221276 122221453 -30315806 + B2_Mm2 SINE B2 3 187 -8 7 1517 352 261 276 4 chr5 122221453 122221601 -30315658 - B3A SINE B2 -26 190 1 7 1517 900 163 14 0 chr5 122222169 122222316 -30314943 - B1_Mur4 SINE Alu -1 149 1 7 1517 524 254 47 47 chr5 122222470 122222619 -30314640 + B1F1 SINE Alu 1 149 0 7 1517 455 273 8 16 chr5 122223112 122223235 -30314024 + ID_B1 SINE B4 100 221 -3 7 1517 244 309 29 67 chr5 122223257 122223361 -30313898 + MT2B LTR ERVL 152 251 -350 7 1517 282 280 77 39 chr5 122223278 122223382 -30313877 + PB1D9 SINE Alu 11 118 -2 7 1517 879 218 71 0 chr5 122223595 122223792 -30313467 - B3 SINE B2 -5 211 1 7 1517 1132 68 0 20 chr5 122224024 122224173 -30313086 - B1_Mus2 SINE Alu -1 146 1 7 1517 376 229 36 0 chr5 122224393 122224476 -30312783 + B1_Mur1 SINE Alu 49 134 -15 7 1517 1320 66 63 32 chr5 122224485 122224674 -30312585 - B2_Mm2 SINE B2 0 195 1 7 1517 990 79 64 7 chr5 122224678 122224818 -30312441 - B1_Mus1 SINE Alu 0 148 1 7 1517 735 181 43 0 chr5 122225283 122225421 -30311838 - B1_Mur3 SINE Alu -5 144 1 7 1517 294 324 14 0 chr5 122225626 122225700 -30311559 - RSINE1 SINE B4 -13 152 78 7 1517 3312 158 107 10 chr5 122225799 122226417 -30310842 - RLTR33 LTR ERVK 0 678 1 7 1517 324 185 11 32 chr5 122227046 122227141 -30310118 + CT-rich Low_complexity Low_complexity 2 94 0 7 1517 424 190 26 24 chr5 122227141 122227236 -30310023 - B1F SINE Alu -51 98 1 7 1517 259 299 0 93 chr5 122227145 122227252 -30310007 - MT2B2 LTR ERVL -334 250 154 7 1517 21 36 0 0 chr5 122227549 122227577 -30309682 + AT_rich Low_complexity Low_complexity 1 28 0 7 1517 380 108 261 0 chr5 122228233 122228298 -30308961 + B1_Mus1 SINE Alu 1 82 -66 7 1517 330 281 16 55 chr5 122228400 122228528 -30308731 + RLTR25B LTR ERVK 399 521 -507 7 1517 852 28 0 9 chr5 122228443 122228551 -30308708 + B1_Mus2 SINE Alu 41 147 0 7 1517 204 97 0 0 chr5 122228552 122228583 -30308676 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1517 227 254 18 0 chr5 122230331 122230386 -30306873 + ID_B1 SINE B4 163 218 -6 7 1517 24 0 0 0 chr5 122230640 122230664 -30306595 + GC_rich Low_complexity Low_complexity 1 24 0 7 1517 27 49 0 0 chr5 122232046 122232087 -30305172 + AT_rich Low_complexity Low_complexity 1 41 0 7 1517 593 254 23 16 chr5 122232249 122232377 -30304882 + B1F1 SINE Alu 10 138 -11 7 1517 295 292 58 4 chr5 122233257 122233344 -30303915 + BC1_Mm scRNA scRNA 1 89 -63 7 1517 224 164 53 35 chr5 122233543 122233600 -30303659 + B3 SINE B2 3 60 -156 7 1517 1604 37 5 0 chr5 122235892 122236083 -30301176 - B2_Mm1a SINE B2 0 193 2 7 1517 954 217 35 5 chr5 122236570 122236769 -30300490 - B3 SINE B2 -10 206 2 7 1517 213 39 0 0 chr5 122236784 122236810 -30300449 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1517 794 290 26 0 chr5 122236811 122237004 -30300255 - B3A SINE B2 0 198 1 7 1517 213 39 0 0 chr5 122237083 122237109 -30300150 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1517 448 244 95 62 chr5 122237467 122237517 -30299742 - B2_Mm2 SINE B2 -10 185 133 7 1517 366 74 0 0 chr5 122237517 122237571 -30299688 + (TATG)n Simple_repeat Simple_repeat 1 54 0 7 1517 581 281 8 0 chr5 122237571 122237699 -30299560 - B3 SINE B2 -87 129 1 7 1517 1168 80 105 52 chr5 122237785 122238024 -30299235 - L1_Mus3 LINE L1 0 6638 6418 7 1517 1274 41 0 0 chr5 122238051 122238197 -30299062 - B1_Mus2 SINE Alu 0 147 2 7 1517 1350 66 61 0 chr5 122238200 122238381 -30298878 - B2_Mm2 SINE B2 -3 192 1 7 1517 21 0 0 0 chr5 122238393 122238414 -30298845 + AT_rich Low_complexity Low_complexity 1 21 0 7 1517 250 326 102 92 chr5 122238423 122238434 -30298825 - B3A SINE B2 0 198 190 7 1517 1238 41 7 0 chr5 122238434 122238580 -30298679 - B1_Mm SINE Alu 0 147 1 7 1517 250 326 102 92 chr5 122238580 122238764 -30298495 - B3A SINE B2 -9 189 1 7 1517 360 279 140 34 chr5 122238876 122239171 -30298088 - L1MA4A LINE L1 -372 5931 5590 7 1517 592 175 103 45 chr5 122239195 122239358 -30297901 - B3 SINE B2 -11 184 3 7 1517 391 219 42 118 chr5 122239371 122239520 -30297739 - L1_Mur2 LINE L1 -584 5572 5399 7 1517 319 316 28 107 chr5 122239563 122239740 -30297519 - B3A SINE B2 -16 182 20 7 1517 255 307 20 1 chr5 122239754 122239874 -30297385 - L1MA4A LINE L1 -855 5442 5322 7 1517 262 339 91 30 chr5 122239972 122240170 -30297089 - L1M4 LINE L1 -439 5745 5536 7 1517 333 299 13 0 chr5 122240501 122240578 -30296681 + RSINE1 SINE B4 49 126 -39 7 1517 792 134 54 34 chr5 122240638 122240785 -30296474 - B1_Mur4 SINE Alu 0 150 1 7 1517 272 193 217 0 chr5 122241054 122241137 -30296122 - L1M4 LINE L1 -903 5243 5143 7 1517 843 184 0 42 chr5 122241472 122241614 -30295645 + B1_Mm SINE Alu 3 138 -9 7 1517 229 293 7 102 chr5 122241492 122241629 -30295630 - YREP_Mm Unknown Unknown -1518 294 171 7 1517 234 261 50 34 chr5 122241722 122241841 -30295418 - L1MA4A LINE L1 -2995 3148 3028 7 1517 30 59 0 0 chr5 122241841 122241892 -30295367 + AT_rich Low_complexity Low_complexity 1 51 0 7 1517 423 312 76 12 chr5 122242045 122242217 -30295042 - MIR SINE MIR -17 245 63 7 1517 1240 120 5 16 chr5 122242690 122242876 -30294383 - B2_Mm1a SINE B2 -9 184 1 7 1517 928 84 92 0 chr5 122243022 122243153 -30294106 + B1_Mm SINE Alu 1 143 -4 7 1517 687 84 0 0 chr5 122243153 122243248 -30294011 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 7 1517 848 234 47 47 chr5 122243367 122243410 -30293849 - B3 SINE B2 0 216 182 7 1517 3954 36 19 8 chr5 122243410 122243880 -30293379 - MT2C_Mm LTR ERVL 0 475 1 7 1517 848 234 47 47 chr5 122243880 122244051 -30293208 - B3 SINE B2 -35 181 2 7 1517 262 178 0 0 chr5 122244347 122244392 -30292867 - B1F SINE Alu -95 54 10 7 1517 532 227 44 36 chr5 122244446 122244583 -30292676 - B1_Mur2 SINE Alu -10 139 2 7 1517 621 180 44 66 chr5 122244669 122244806 -30292453 + B1_Mur3 SINE Alu 1 134 -15 7 1517 219 146 0 0 chr5 122245068 122245109 -30292150 + (CAG)n Simple_repeat Simple_repeat 1 41 0 7 1517 335 276 19 28 chr5 122245800 122245908 -30291351 + PB1D10 SINE Alu 11 117 0 7 1517 426 330 0 0 chr5 122246703 122246815 -30290444 + PB1D10 SINE Alu 6 117 0 7 1517 237 65 0 0 chr5 122247046 122247077 -30290182 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1517 479 267 109 7 chr5 122247989 122248136 -30289123 - RSINE1 SINE B4 -1 164 3 7 1517 519 232 44 88 chr5 122248206 122248343 -30288916 - B1_Mur1 SINE Alu -15 132 2 7 1517 1026 213 5 28 chr5 122248365 122248578 -30288681 + B3 SINE B2 1 208 -8 7 1517 662 266 75 5 chr5 122248582 122248782 -30288477 - B3 SINE B2 -2 214 1 7 1517 488 198 243 0 chr5 122248886 122248997 -30288262 - B1_Mur1 SINE Alu -5 144 7 7 1517 326 236 209 52 chr5 122248997 122249020 -30288239 - ID_B1 SINE B4 -5 219 65 7 1517 240 222 30 45 chr5 122249004 122249070 -30288189 - ID_B1 SINE B4 -1 223 159 7 1517 227 219 0 0 chr5 122249389 122249430 -30287829 - tRNA-Ala-GCY_ tRNA tRNA 0 75 35 7 1517 813 21 0 0 chr5 122249442 122249537 -30287722 + (GGGA)n Simple_repeat Simple_repeat 3 97 0 7 1517 240 239 225 0 chr5 122249714 122249785 -30287474 + ID_B1 SINE B4 121 207 -17 7 1517 386 279 112 71 chr5 122250686 122250883 -30286376 - MER20 DNA MER1_type -14 205 1 7 1517 23 0 0 0 chr5 122251177 122251200 -30286059 + AT_rich Low_complexity Low_complexity 1 23 0 7 1517 1173 58 0 0 chr5 122251593 122251732 -30285527 - B1_Mus2 SINE Alu -8 139 1 7 1517 251 232 0 35 chr5 122252476 122252534 -30284725 + B3A SINE B2 28 83 -115 7 1517 358 282 147 6 chr5 122252708 122252865 -30284394 + B3A SINE B2 2 180 -18 7 1517 212 213 169 26 chr5 122253212 122253289 -30283970 + PB1 SINE Alu 36 123 -4 7 1517 205 53 51 26 chr5 122253295 122253334 -30283925 + (GAAAA)n Simple_repeat Simple_repeat 3 42 0 7 1517 677 214 20 27 chr5 122253486 122253635 -30283624 + B1_Mur2 SINE Alu 1 148 -1 7 1517 274 291 36 64 chr5 122254341 122254451 -30282808 + PB1D10 SINE Alu 2 108 -9 7 1517 814 150 31 0 chr5 122255473 122255600 -30281659 - B1_Mur1 SINE Alu -13 136 6 7 1517 462 258 40 108 chr5 122255600 122255621 -30281638 - B4 SINE B4 -79 213 76 7 1517 464 171 0 24 chr5 122256414 122256498 -30280761 + ID4_ SINE ID 2 83 0 7 1517 1543 58 5 0 chr5 122258058 122258246 -30279013 - B2_Mm1t SINE B2 -4 189 1 7 1517 830 237 91 0 chr5 122258445 122258643 -30278616 + B3 SINE B2 1 216 0 7 1517 25 0 0 0 chr5 122258729 122258754 -30278505 + AT_rich Low_complexity Low_complexity 1 25 0 7 1517 346 210 0 0 chr5 122258889 122258951 -30278308 + tRNA-Ala-GCY_ tRNA tRNA 5 66 -9 7 1517 213 39 0 0 chr5 122262173 122262199 -30275060 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 7 1517 202 26 0 95 chr5 122264901 122264943 -30272316 + (TAAAAA)n Simple_repeat Simple_repeat 5 42 0 7 1517 288 276 176 128 chr5 122271472 122271659 -30265600 + ID_B1 SINE B4 10 205 -19 7 1517 726 168 26 53 chr5 122271919 122272070 -30265189 + B1_Mus2 SINE Alu 1 147 0 7 1517 326 231 12 71 chr5 122272107 122272248 -30265011 + B3 SINE B2 2 176 -40 7 1517 395 255 123 21 chr5 122272532 122272744 -30264515 + L1MB7 LINE L1 5629 5902 -282 7 1517 435 214 24 0 chr5 122275000 122275084 -30262175 - PB1D10 SINE Alu -2 115 30 7 1517 389 252 93 58 chr5 122275136 122275275 -30261984 - ID_B1 SINE B4 0 224 81 7 1517 558 258 23 0 chr5 122275511 122275639 -30261620 + B1F1 SINE Alu 3 133 -16 8 1517 422 292 9 0 chr5 122275962 122276075 -30261184 + PB1D10 SINE Alu 2 115 -2 8 1517 1133 82 0 0 chr5 122276135 122276281 -30260978 + B1_Mus1 SINE Alu 1 146 -2 8 1517 650 230 264 21 chr5 122276510 122276745 -30260514 + B4A SINE B4 1 292 0 8 1517 284 295 19 19 chr5 122276978 122277085 -30260174 + L1M4 LINE L1 5623 5729 -449 8 1517 471 291 117 22 chr5 122277270 122277449 -30259810 + B3A SINE B2 2 197 -1 8 1517 683 260 88 0 chr5 122277466 122277670 -30259589 + ID_B1 SINE B4 1 222 -2 8 1517 1029 100 43 0 chr5 122279562 122279702 -30257557 + B1_Mus2 SINE Alu 2 147 0 8 1517 1243 35 14 0 chr5 122280265 122280410 -30256849 + B1_Mm SINE Alu 1 147 0 8 1517 280 256 24 0 chr5 122280658 122280740 -30256519 - L2b LINE L2 0 3375 3292 8 1517 225 286 149 54 chr5 122280742 122280771 -30256488 - YREP_Mm Unknown Unknown -1480 332 234 8 1517 408 175 184 0 chr5 122280771 122280874 -30256385 + ID_B1 SINE B4 102 223 -1 8 1517 225 286 149 54 chr5 122280874 122280890 -30256369 - YREP_Mm Unknown Unknown -1480 233 171 8 1517 279 276 7 171 chr5 122281607 122281747 -30255512 - B1F1 SINE Alu -20 129 13 8 1517 490 231 82 8 chr5 122281700 122281822 -30255437 - ID_B1 SINE B4 -84 140 10 8 1517 606 63 0 0 chr5 122283041 122283120 -30254139 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 8 1517 207 0 0 0 chr5 122283508 122283531 -30253728 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1517 256 279 32 71 chr5 122284905 122285007 -30252252 - MIR SINE MIR -80 128 31 8 1517 23 0 0 0 chr5 122287062 122287085 -30250174 + AT_rich Low_complexity Low_complexity 1 23 0 8 1517 258 293 101 59 chr5 122287788 122287944 -30249315 + MIR SINE MIR 59 213 -49 8 1517 21 0 0 0 chr5 122288881 122288902 -30248357 + GC_rich Low_complexity Low_complexity 1 21 0 8 1517 331 220 50 32 chr5 122289279 122289300 -30247959 + B1F SINE Alu 1 143 -2 8 1517 324 303 0 10 chr5 122289300 122289400 -30247859 + ID_B1 SINE B4 122 220 -4 8 1517 338 269 310 26 chr5 122289485 122289655 -30247604 + B4A SINE B4 3 220 -72 8 1517 225 0 0 0 chr5 122289655 122289680 -30247579 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1517 603 228 65 0 chr5 122289683 122289806 -30247453 + B1_Mur1 SINE Alu 19 149 0 8 1517 1072 122 0 0 chr5 122289834 122289981 -30247278 + B1_Mus2 SINE Alu 1 147 0 8 189 1215 48 7 0 chr5 122290067 122290213 -30247046 - B1_Mm SINE Alu 0 147 1 8 1518 336 24 0 0 chr5 122290231 122290272 -30246987 + (A)n Simple_repeat Simple_repeat 1 41 0 8 1518 337 308 88 27 chr5 122290282 122290429 -30246830 - ID_B1 SINE B4 -2 222 67 8 1518 411 211 37 28 chr5 122290430 122290537 -30246722 - PB1D7 SINE Alu -8 112 5 8 1518 400 204 11 11 chr5 122290592 122290699 -30246560 + PB1D9 SINE Alu 13 119 -1 8 1518 217 232 35 35 chr5 122290713 122290771 -30246488 + B1F2 SINE Alu 6 63 -86 8 1518 420 289 48 0 chr5 122290915 122291019 -30246240 - PB1D7 SINE Alu 0 120 12 8 1518 401 236 45 159 chr5 122291024 122291200 -30246059 + B4A SINE B4 63 218 -74 8 1518 939 88 22 0 chr5 122291068 122291204 -30246055 + B1_Mur4 SINE Alu 7 145 -5 8 1518 25 31 0 0 chr5 122291245 122291277 -30245982 + AT_rich Low_complexity Low_complexity 1 32 0 8 1518 1028 169 42 21 chr5 122291289 122291482 -30245777 + B3A SINE B2 1 197 -1 8 1518 678 266 7 0 chr5 122291501 122291640 -30245619 + RSINE1 SINE B4 3 142 -23 8 1518 256 243 28 14 chr5 122291631 122291702 -30245557 - PB1D10 SINE Alu -24 93 22 8 1518 233 217 0 68 chr5 122291654 122291728 -30245531 - ID_B1 SINE B4 -75 149 81 8 1518 233 162 0 0 chr5 122291865 122291902 -30245357 + MLT1H LTR MaLR 513 549 0 8 1518 400 223 126 0 chr5 122292446 122292549 -30244710 - B1F SINE Alu -31 118 3 8 1518 282 29 0 0 chr5 122293146 122293181 -30244078 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 8 1518 279 202 177 0 chr5 122293378 122293457 -30243802 + PB1D9 SINE Alu 1 93 -27 8 1518 244 315 22 0 chr5 122293529 122293618 -30243641 + L2c LINE L2 3074 3164 -223 8 1518 252 231 0 71 chr5 122293790 122293874 -30243385 - L1M4 LINE L1 -330 5854 5777 8 1518 278 197 65 16 chr5 122294095 122294157 -30243102 + MIR3 SINE MIR 94 158 -50 8 1518 535 261 0 9 chr5 122294165 122294281 -30242978 - MTC LTR MaLR 0 421 307 8 1518 485 256 127 0 chr5 122294420 122294588 -30242671 - B4A SINE B4 -103 189 2 8 1518 306 0 0 0 chr5 122294641 122294675 -30242584 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1518 512 296 0 0 chr5 122294676 122294801 -30242458 - RSINE1 SINE B4 -38 127 3 8 1518 24 32 0 0 chr5 122294816 122294847 -30242412 + AT_rich Low_complexity Low_complexity 1 31 0 8 1518 293 73 0 0 chr5 122294849 122294890 -30242369 + B2_Mm2 SINE B2 2 42 -153 8 1518 249 0 65 0 chr5 122294883 122294929 -30242330 + B2_Mm1t SINE B2 137 185 -8 8 1518 1455 67 0 6 chr5 122294929 122295110 -30242149 - B2_Mm2 SINE B2 -14 181 2 8 1518 1236 41 0 14 chr5 122295139 122295287 -30241972 - B1_Mm SINE Alu 0 147 2 8 1518 647 108 0 10 chr5 122295361 122295464 -30241795 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 8 1518 462 171 0 26 chr5 122296288 122296366 -30240893 - ID4_ SINE ID -6 77 2 8 1518 314 336 26 9 chr5 122296401 122296515 -30240744 + PB1D10 SINE Alu 1 116 -1 8 1518 297 331 8 40 chr5 122296607 122296643 -30240616 + B4 SINE B4 46 81 -211 8 1518 1148 64 7 0 chr5 122296643 122296784 -30240475 + B1_Mus1 SINE Alu 1 142 -6 8 1518 180 0 0 0 chr5 122296786 122296806 -30240453 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 8 1518 710 200 21 7 chr5 122296810 122296951 -30240308 + B1_Mur4 SINE Alu 1 143 -7 8 1518 3419 38 2 5 chr5 122297007 122297404 -30239855 - MTA_Mm LTR MaLR 0 396 1 8 1518 293 229 30 0 chr5 122297517 122297614 -30239645 + B1F2 SINE Alu 2 101 -49 8 1518 214 176 58 14 chr5 122297617 122297686 -30239573 + (TTAA)n Simple_repeat Simple_repeat 4 75 0 8 1518 401 120 43 0 chr5 122297714 122297806 -30239453 + (TA)n Simple_repeat Simple_repeat 1 96 0 8 1518 306 138 0 0 chr5 122298634 122298692 -30238567 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 8 1518 566 264 0 8 chr5 122299368 122299494 -30237765 - RSINE1 SINE B4 -29 136 12 8 1518 1047 44 82 0 chr5 122299543 122299678 -30237581 - B1_Mus2 SINE Alu 0 147 2 8 1518 684 222 27 20 chr5 122299681 122299828 -30237431 - B1_Mur1 SINE Alu 0 149 2 8 1518 217 132 0 50 chr5 122299845 122299885 -30237374 - B1_Mus1 SINE Alu -98 50 13 8 1518 187 254 59 73 chr5 122301162 122301230 -30236029 - MIR SINE MIR -61 147 81 8 1518 287 300 48 35 chr5 122301343 122301488 -30235771 - MIRm SINE MIR -116 160 14 8 1518 456 19 0 0 chr5 122304745 122304798 -30232461 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1518 896 43 0 0 chr5 122306048 122306163 -30231096 + B1_Mus1 SINE Alu 26 140 -8 8 1518 433 256 0 11 chr5 122306525 122306616 -30230643 - PB1 SINE Alu -24 103 14 8 1518 311 356 40 0 chr5 122306699 122306848 -30230411 - MIR SINE MIR -73 189 35 8 1518 194 297 129 21 chr5 122307164 122307257 -30230002 - MIR SINE MIR -43 219 117 8 1518 526 251 73 25 chr5 122307604 122307757 -30229502 + ID_B1 SINE B4 64 213 -11 8 1518 332 116 0 34 chr5 122307757 122307824 -30229435 + B1_Mur3 SINE Alu 1 65 -85 8 1518 368 256 41 41 chr5 122307829 122307951 -30229308 + B1_Mur4 SINE Alu 23 144 -6 8 1518 492 248 54 41 chr5 122308009 122308156 -30229103 + RSINE1 SINE B4 17 165 0 8 1518 513 188 0 0 chr5 122308170 122308266 -30228993 + PB1D9 SINE Alu 25 120 0 8 1518 252 0 0 0 chr5 122309159 122309187 -30228072 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1518 207 0 0 0 chr5 122310114 122310137 -30227122 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1518 183 80 0 0 chr5 122310545 122310570 -30226689 + (GGGA)n Simple_repeat Simple_repeat 3 27 0 8 1518 189 0 0 0 chr5 122311722 122311743 -30225516 + (TG)n Simple_repeat Simple_repeat 1 21 0 8 1518 1067 37 81 0 chr5 122311837 122311973 -30225286 + B1_Mus2 SINE Alu 1 147 0 8 1518 512 322 99 2 chr5 122311997 122312298 -30224961 + MTD LTR MaLR 46 405 -14 8 1518 369 326 15 58 chr5 122312384 122312521 -30224738 - B4A SINE B4 -60 232 102 8 1518 1449 68 10 26 chr5 122312543 122312738 -30224521 - B2_Mm1t SINE B2 0 193 2 8 1518 566 167 0 0 chr5 122312745 122312835 -30224424 - B1_Mur1 SINE Alu 0 149 60 8 1518 859 68 0 0 chr5 122312858 122312975 -30224284 + B1_Mus1 SINE Alu 19 135 -13 8 1518 230 56 0 27 chr5 122312975 122313012 -30224247 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 8 1518 242 196 20 0 chr5 122313430 122313481 -30223778 - MIRc SINE MIR -142 126 75 8 1518 1173 54 0 26 chr5 122313790 122313928 -30223331 + B1_Mm SINE Alu 1 138 -9 8 1518 207 0 0 0 chr5 122313928 122313951 -30223308 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1518 1173 54 0 26 chr5 122313951 122313963 -30223296 + B1_Mm SINE Alu 139 147 0 8 1518 1294 89 5 94 chr5 122313980 122314192 -30223067 + B2_Mm2 SINE B2 2 194 -1 8 1518 279 0 0 0 chr5 122314614 122314645 -30222614 + (C)n Simple_repeat Simple_repeat 1 31 0 8 1518 195 42 0 0 chr5 122314932 122314956 -30222303 + (GGGAGA)n Simple_repeat Simple_repeat 1 24 0 9 1518 227 345 72 0 chr5 122315304 122315435 -30221824 + ORR1E LTR MaLR 1 141 -218 9 1518 1153 204 9 31 chr5 122315435 122315658 -30221601 - ID_B1 SINE B4 -5 219 2 9 1518 234 161 0 162 chr5 122316224 122316298 -30220961 + B2_Mm2 SINE B2 63 124 -71 9 1518 495 223 0 0 chr5 122316437 122316531 -30220728 + B4A SINE B4 185 278 -14 9 1518 385 261 54 9 chr5 122316540 122316652 -30220607 + PB1D7 SINE Alu 1 117 -3 9 1518 311 269 0 13 chr5 122317594 122317673 -30219586 - PB1D10 SINE Alu -8 109 32 9 1518 255 280 46 39 chr5 122317688 122317818 -30219441 + (CCTG)n Simple_repeat Simple_repeat 2 132 0 9 1518 227 250 14 130 chr5 122318723 122318861 -30218398 - RLTR47_MM LTR ERV1 -386 146 25 9 1518 1284 73 85 0 chr5 122320042 122320219 -30217040 + B2_Mm2 SINE B2 1 192 -3 9 1518 279 109 0 0 chr5 122320403 122320414 -30216845 + (A)n Simple_repeat Simple_repeat 1 11 0 9 1518 1268 41 0 0 chr5 122320414 122320561 -30216698 + B1_Mm SINE Alu 1 147 0 9 1518 279 109 0 0 chr5 122320561 122320595 -30216664 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1518 811 94 8 30 chr5 122320609 122320740 -30216519 + B1_Mur4 SINE Alu 12 139 -11 9 1518 224 114 45 0 chr5 122320878 122320922 -30216337 + G-rich Low_complexity Low_complexity 4 49 0 9 1518 948 81 0 22 chr5 122321430 122321569 -30215690 - B1_Mus2 SINE Alu -1 146 11 9 1518 291 93 0 0 chr5 122321570 122321613 -30215646 + (CCA)n Simple_repeat Simple_repeat 3 45 0 9 1518 607 177 0 130 chr5 122322003 122322014 -30215245 + B1_Mus1 SINE Alu 8 17 -131 9 1518 201 74 0 0 chr5 122322014 122322041 -30215218 + (TGG)n Simple_repeat Simple_repeat 1 27 0 9 1518 607 177 0 130 chr5 122322041 122322191 -30215068 + B1_Mus1 SINE Alu 18 148 0 9 1518 418 328 1 0 chr5 122322600 122322743 -30214516 - MIRb SINE MIR -98 170 25 9 1518 209 222 139 0 chr5 122322737 122322809 -30214450 - L2c LINE L2 -181 3206 3125 9 1518 227 301 56 66 chr5 122324260 122324331 -30212928 - RMER17D LTR ERVK -357 532 458 9 1518 189 0 0 0 chr5 122324331 122324352 -30212907 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 9 1518 227 301 56 66 chr5 122324352 122324476 -30212783 - RMER17D LTR ERVK -432 457 339 9 1518 559 143 0 0 chr5 122325401 122325485 -30211774 - B1_Mur3 SINE Alu -54 95 12 9 1518 513 239 9 0 chr5 122325533 122325642 -30211617 - ID_B1 SINE B4 -3 221 112 9 1518 229 318 67 11 chr5 122325569 122325658 -30211601 + RLTR24 LTR ERV1 28 121 -408 9 1518 443 319 35 65 chr5 122325852 122326053 -30211206 + MER2B DNA MER2_type 79 273 -63 9 1518 1544 187 88 29 chr5 122326259 122326622 -30210637 + MTD LTR MaLR 1 365 -14 9 1518 376 259 59 59 chr5 122327356 122327456 -30209803 + PB1D7 SINE Alu 2 108 -12 9 1518 267 31 0 0 chr5 122327456 122327488 -30209771 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9 1518 376 259 59 59 chr5 122327488 122327506 -30209753 + PB1D7 SINE Alu 109 120 0 9 1518 1211 54 0 20 chr5 122327540 122327691 -30209568 + B1_Mus1 SINE Alu 1 148 0 9 1518 671 306 60 0 chr5 122327762 122327961 -30209298 + B4 SINE B4 82 292 0 9 1518 360 0 0 0 chr5 122327997 122328037 -30209222 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1518 405 0 0 0 chr5 122328726 122328771 -30208488 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1518 199 305 34 36 chr5 122330361 122330452 -30206807 + MIRc SINE MIR 57 156 -112 9 1518 309 254 203 8 chr5 122330547 122330670 -30206589 - B1F2 SINE Alu -2 147 1 9 1518 290 356 68 7 chr5 122330998 122331145 -30206114 + MER58A DNA MER1_type 38 193 -31 9 1518 799 126 96 7 chr5 122331405 122331541 -30205718 + B1_Mur1 SINE Alu 2 149 0 9 1518 2354 149 161 12 chr5 122331579 122332075 -30205184 + RMER4B LTR ERVK 1 570 -15 9 1518 1026 200 8 64 chr5 122332110 122332345 -30204914 + ID_B1 SINE B4 3 224 0 9 1518 201 154 0 0 chr5 122332713 122332752 -30204507 + C-rich Low_complexity Low_complexity 4 42 0 9 1518 628 185 2 11 chr5 122333013 122333152 -30204107 - B1_Mus1 SINE Alu -1 148 11 9 1518 187 186 116 0 chr5 122333516 122333559 -30203700 + MIRb SINE MIR 213 260 -8 9 1518 252 279 42 31 chr5 122333602 122333698 -30203561 + L2b LINE L2 3277 3373 -2 9 1518 270 217 0 0 chr5 122334126 122334186 -30203073 + C-rich Low_complexity Low_complexity 1 60 0 9 1518 366 224 133 0 chr5 122334341 122334439 -30202820 - B1F SINE Alu 0 149 39 9 1518 212 0 36 0 chr5 122335588 122335616 -30201643 + (CAA)n Simple_repeat Simple_repeat 2 30 0 9 1518 231 36 0 0 chr5 122335624 122335652 -30201607 + (CCA)n Simple_repeat Simple_repeat 1 28 0 9 1518 2415 149 44 19 chr5 122336114 122336525 -30200734 + MTC LTR MaLR 1 421 0 9 1518 276 211 77 26 chr5 122337140 122337218 -30200041 + RMER10A LTR ERVL 318 399 -43 9 1518 22 56 0 0 chr5 122337644 122337680 -30199579 + AT_rich Low_complexity Low_complexity 1 36 0 9 1518 879 72 168 0 chr5 122337692 122337817 -30199442 + B1_Mm SINE Alu 1 146 -1 9 1518 679 225 28 0 chr5 122337851 122337993 -30199266 - B3A SINE B2 -22 176 31 9 1518 1092 187 19 126 chr5 122338002 122338205 -30199054 + ORR1D1 LTR MaLR 1 172 -202 9 1518 246 105 0 0 chr5 122338205 122338243 -30199016 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 9 1518 745 161 85 0 chr5 122338244 122338374 -30198885 - B1_Mur2 SINE Alu -8 141 1 9 1518 1092 187 19 126 chr5 122338374 122338486 -30198773 + ORR1D1 LTR MaLR 173 284 -90 9 1518 205 176 0 0 chr5 122338964 122338998 -30198261 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1518 184 125 0 0 chr5 122339114 122339146 -30198113 + L2b LINE L2 3121 3152 -223 9 1518 261 0 0 0 chr5 122339806 122339835 -30197424 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1518 244 185 17 69 chr5 122340165 122340223 -30197036 + PB1D10 SINE Alu 40 94 -23 9 1518 280 274 8 50 chr5 122340229 122340348 -30196911 + ID_B1 SINE B4 3 116 -108 9 1518 477 141 0 0 chr5 122340393 122340464 -30196795 + ID2 SINE ID 3 73 -10 9 1518 198 0 0 0 chr5 122340725 122340747 -30196512 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1518 207 0 0 0 chr5 122340944 122340967 -30196292 + (ATTG)n Simple_repeat Simple_repeat 4 26 0 9 1518 707 189 7 22 chr5 122340967 122341102 -30196157 - B1_Mus2 SINE Alu -14 133 1 9 1518 200 35 35 0 chr5 122342782 122342811 -30194448 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1518 223 343 28 9 chr5 122342820 122342926 -30194333 + L2b LINE L2 3262 3369 -6 9 1518 182 306 32 0 chr5 122343375 122343437 -30193822 + MIRb SINE MIR 191 254 -14 9 1518 596 209 11 11 chr5 122343528 122343702 -30193557 + GA-rich Low_complexity Low_complexity 3 176 0 9 1518 183 114 0 0 chr5 122343914 122343949 -30193310 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1518 276 91 0 0 chr5 122344536 122344580 -30192679 + (G)n Simple_repeat Simple_repeat 1 44 0 9 1518 315 71 0 0 chr5 122345725 122345767 -30191492 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1518 189 214 0 0 chr5 122345767 122345809 -30191450 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1518 1040 67 30 0 chr5 122346279 122346414 -30190845 + B1_Mus1 SINE Alu 1 139 -9 9 1518 216 0 0 0 chr5 122346434 122346458 -30190801 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1518 415 230 210 86 chr5 122346539 122346796 -30190463 - B4 SINE B4 0 292 4 9 1518 373 139 316 0 chr5 122346796 122346875 -30190384 - PB1D7 SINE Alu -11 109 6 9 1518 284 274 67 71 chr5 122347400 122347655 -30189604 + RLTR21 LTR ERVK 1062 1315 -257 9 1518 447 209 0 0 chr5 122347664 122347774 -30189485 + (TG)n Simple_repeat Simple_repeat 1 110 0 9 1518 204 179 0 0 chr5 122348077 122348116 -30189143 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1518 1239 41 7 0 chr5 122348517 122348664 -30188595 + B1_Mus1 SINE Alu 1 148 0 9 1518 350 214 26 112 chr5 122348740 122348856 -30188403 + MIR SINE MIR 60 165 -97 9 1518 898 274 18 40 chr5 122349571 122349799 -30187460 - ID_B1 SINE B4 0 224 2 9 1518 218 238 0 0 chr5 122349967 122350009 -30187250 - B1F2 SINE Alu -68 81 40 9 1518 448 341 84 24 chr5 122350299 122350596 -30186663 + MER33 DNA MER1_type 5 319 -5 9 1518 509 296 11 107 chr5 122351825 122352003 -30185256 + RSINE1 SINE B4 5 165 0 9 1518 443 304 69 40 chr5 122352021 122352268 -30184991 + MER33 DNA MER1_type 57 310 -14 9 1518 517 325 60 10 chr5 122352296 122352495 -30184764 + MER58A DNA MER1_type 2 210 -14 9 1518 312 234 59 67 chr5 122352764 122352883 -30184376 - B4A SINE B4 -174 118 1 9 1518 180 0 0 0 chr5 122353400 122353420 -30183839 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1518 286 156 15 15 chr5 122353717 122353782 -30183477 + GA-rich Low_complexity Low_complexity 4 68 0 9 1518 236 364 92 39 chr5 122354530 122354759 -30182500 - MIRb SINE MIR -12 256 16 9 1518 261 275 0 42 chr5 122354940 122355012 -30182247 + L1ME2 LINE L1 6092 6160 -4 9 1518 257 320 20 49 chr5 122355052 122355154 -30182105 + MER102c DNA MER1_type 87 185 -146 9 1518 297 282 0 45 chr5 122355905 122355994 -30181265 - BC1_Mm scRNA scRNA -51 101 17 9 1518 1188 62 7 0 chr5 122356061 122356207 -30181052 + B1_Mus1 SINE Alu 2 148 0 9 1518 4534 42 2 7 chr5 122356246 122356792 -30180467 + L1Md_F2 LINE L1 6040 6582 0 9 1518 383 325 62 38 chr5 122357303 122357463 -30179796 - MER58A DNA MER1_type -35 189 26 9 1518 437 232 34 43 chr5 122357583 122357700 -30179559 + PB1D10 SINE Alu 2 117 0 9 1518 223 313 15 15 chr5 122357821 122357889 -30179370 + MIRm SINE MIR 205 272 -4 9 1518 780 221 94 18 chr5 122358275 122358445 -30178814 - B3A SINE B2 -15 183 1 1 1518 217 170 0 60 chr5 122358448 122358498 -30178761 - PB1D10 SINE Alu -40 77 31 1 1518 459 92 0 0 chr5 122360083 122360148 -30177111 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1518 270 242 18 14 chr5 122360153 122360227 -30177032 + L2c LINE L2 3282 3378 -9 1 1518 333 328 33 39 chr5 122360220 122360401 -30176858 + MIR SINE MIR 51 230 -32 1 1518 396 0 0 0 chr5 122360518 122360562 -30176697 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1518 351 0 0 0 chr5 122361053 122361092 -30176167 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1518 452 318 62 34 chr5 122361364 122361543 -30175716 - ID_B1 SINE B4 -8 216 33 1 1518 375 221 52 21 chr5 122361626 122361723 -30175536 - PB1D10 SINE Alu -11 106 7 1 1518 183 211 0 0 chr5 122362650 122362688 -30174571 + MIRb SINE MIR 48 85 -183 1 1518 189 0 0 0 chr5 122362808 122362829 -30174430 + (TCTCTG)n Simple_repeat Simple_repeat 1 21 0 1 1518 185 312 14 111 chr5 122362878 122362950 -30174309 + L2c LINE L2 3362 3426 0 1 1518 554 303 31 76 chr5 122363234 122363459 -30173800 + B4 SINE B4 1 215 -77 1 1518 241 262 12 70 chr5 122363763 122363849 -30173410 - MIRb SINE MIR -67 201 121 1 1518 198 271 0 33 chr5 122363961 122364022 -30173237 + MIRm SINE MIR 203 261 -15 1 1518 207 0 0 0 chr5 122364504 122364527 -30172732 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1518 3532 70 31 40 chr5 122364896 122365375 -30171884 - MT2C_Mm LTR ERVL 0 475 1 1 1518 567 268 57 14 chr5 122365884 122366024 -30171235 + RSINE1 SINE B4 20 165 0 1 1518 258 296 36 18 chr5 122366065 122366175 -30171084 - MIRm SINE MIR -136 140 29 1 1518 603 272 51 61 chr5 122368212 122368229 -30169030 - B4 SINE B4 -2 290 277 1 1518 464 32 16 0 chr5 122368229 122368291 -30168968 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1518 603 272 51 61 chr5 122368291 122368469 -30168790 - B4 SINE B4 -16 276 97 1 1518 845 45 0 0 chr5 122368481 122368593 -30168666 + B1_Mus1 SINE Alu 37 148 0 1 1518 264 0 0 98 chr5 122369617 122369668 -30167591 + (TGGGGG)n Simple_repeat Simple_repeat 1 46 0 1 1518 258 299 82 15 chr5 122370143 122370267 -30166992 - MIRb SINE MIR -125 143 16 1 1518 281 146 0 0 chr5 122370479 122370527 -30166732 - MIR SINE MIR -141 121 74 1 1518 28 0 0 0 chr5 122370977 122371005 -30166254 + GC_rich Low_complexity Low_complexity 1 28 0 1 1518 218 245 0 0 chr5 122371141 122371194 -30166065 + G-rich Low_complexity Low_complexity 1 53 0 1 1518 474 0 45 0 chr5 122371431 122371497 -30165762 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1518 1043 92 189 0 chr5 122371596 122371760 -30165499 - B2_Mm2 SINE B2 0 195 1 1 1518 353 121 66 88 chr5 122371760 122371840 -30165419 - PB1D10 SINE Alu -9 108 29 1 1518 266 262 0 0 chr5 122372357 122372418 -30164841 + G-rich Low_complexity Low_complexity 4 64 0 1 1518 457 272 149 7 chr5 122373502 122373650 -30163609 + ID_B1 SINE B4 2 170 -54 1 1518 306 224 188 0 chr5 122373588 122373673 -30163586 + PB1D10 SINE Alu 13 113 -4 1 1518 23 33 0 0 chr5 122374140 122374170 -30163089 + AT_rich Low_complexity Low_complexity 1 30 0 1 1518 185 108 0 26 chr5 122374712 122374750 -30162509 + (GGGTG)n Simple_repeat Simple_repeat 3 39 0 1 1518 912 90 0 0 chr5 122374931 122375076 -30162183 + (GA)n Simple_repeat Simple_repeat 1 145 0 1 1518 198 91 0 0 chr5 122375202 122375235 -30162024 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1518 22 0 0 0 chr5 122376148 122376170 -30161089 + AT_rich Low_complexity Low_complexity 1 22 0 1 1518 306 0 0 0 chr5 122376780 122376814 -30160445 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1518 215 234 108 15 chr5 122377021 122377086 -30160173 - PB1D10 SINE Alu -29 88 18 1 1518 429 20 0 0 chr5 122378203 122378253 -30159006 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1518 627 14 0 0 chr5 122378988 122379060 -30158199 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1518 303 314 0 56 chr5 122379060 122379079 -30158180 - ID_B1 SINE B4 -33 191 90 1 1518 310 270 22 0 chr5 122379079 122379168 -30158091 - B1F1 SINE Alu -50 99 9 1 1518 380 297 0 59 chr5 122379201 122379319 -30157940 - PB1D10 SINE Alu -5 112 2 1 1518 351 208 25 0 chr5 122379419 122379539 -30157720 + (CA)n Simple_repeat Simple_repeat 2 124 0 1 1518 575 209 14 24 chr5 122379557 122379846 -30157413 + (CA)n Simple_repeat Simple_repeat 1 285 0 1 1518 211 297 70 85 chr5 122379865 122379994 -30157265 + B4A SINE B4 55 181 -111 1 1518 197 216 45 0 chr5 122380867 122380955 -30156304 + (TCCA)n Simple_repeat Simple_repeat 4 95 0 1 1518 213 244 69 9 chr5 122380961 122381077 -30156182 + (TCTA)n Simple_repeat Simple_repeat 2 124 0 1 1518 521 165 23 6 chr5 122381079 122381264 -30155995 + (TCCA)n Simple_repeat Simple_repeat 1 188 0 1 1518 206 307 0 39 chr5 122381304 122381382 -30155877 - L2a LINE L2 0 3426 3352 1 1518 252 0 0 0 chr5 122381505 122381533 -30155726 + (TTGG)n Simple_repeat Simple_repeat 3 30 0 1 1518 255 377 47 2 chr5 122381576 122381773 -30155486 + L2a LINE L2 2910 3119 -307 1 1518 285 159 0 0 chr5 122382441 122382504 -30154755 + (TTCA)n Simple_repeat Simple_repeat 1 63 0 1 1518 237 308 13 0 chr5 122382528 122382606 -30154653 + (TTCA)n Simple_repeat Simple_repeat 1 79 0 1 1518 186 246 0 119 chr5 122383340 122383441 -30153818 - MIRc SINE MIR -85 123 37 1 1518 190 250 0 0 chr5 122383830 122383874 -30153385 + L2c LINE L2 3023 3066 -321 1 1518 504 0 0 0 chr5 122383895 122383951 -30153308 + (TCCC)n Simple_repeat Simple_repeat 4 59 0 1 1518 200 191 0 4 chr5 122384216 122384262 -30152997 + MIRc SINE MIR 113 157 -105 1 1518 252 278 109 24 chr5 122384317 122384480 -30152779 + MIRb SINE MIR 14 183 -25 1 1518 748 239 28 0 chr5 122385615 122385791 -30151468 + B3A SINE B2 3 183 -15 1 1518 486 0 0 0 chr5 122386583 122386637 -30150622 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1518 288 186 0 0 chr5 122386812 122386871 -30150388 + (TGG)n Simple_repeat Simple_repeat 2 60 0 1 1518 340 229 273 34 chr5 122386978 122387154 -30150105 - B4A SINE B4 -73 219 2 1 1518 1062 152 15 40 chr5 122387189 122387388 -30149871 - B2_Mm2 SINE B2 0 195 2 1 1518 281 226 16 0 chr5 122389192 122389254 -30148005 - Charlie1b DNA MER1_type -11 512 450 1 1518 407 246 0 81 chr5 122389483 122389607 -30147652 + PB1D10 SINE Alu 3 116 -1 1 1518 201 39 0 0 chr5 122389608 122389634 -30147625 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 1 1518 732 196 8 0 chr5 122389706 122389839 -30147420 + RSINE1 SINE B4 1 134 -31 1 1518 452 220 16 48 chr5 122390103 122390227 -30147032 + B1F SINE Alu 9 128 -21 1 1518 301 349 76 25 chr5 122390529 122390726 -30146533 + L1ME3A LINE L1 5658 5864 -309 1 1518 210 304 29 14 chr5 122391014 122391084 -30146175 + L2 LINE L2 2761 2831 -588 1 1518 183 175 0 24 chr5 122391193 122391234 -30146025 + L2 LINE L2 3030 3069 -350 1 1518 276 311 136 0 chr5 122392032 122392135 -30145124 + PB1D10 SINE Alu 1 117 0 1 1518 545 286 98 19 chr5 122392139 122392353 -30144906 + B4A SINE B4 2 232 -60 1 1518 333 0 0 0 chr5 122392406 122392443 -30144816 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1518 1077 67 15 0 chr5 122392550 122392684 -30144575 + B1_Mus1 SINE Alu 5 140 -8 1 1518 360 0 0 0 chr5 122392684 122392724 -30144535 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 1 1518 233 308 124 13 chr5 122393976 122394148 -30143111 + L2b LINE L2 2953 3153 -234 1 1518 185 329 75 12 chr5 122394616 122394696 -30142563 - MIRb SINE MIR -167 101 17 1 1518 251 242 16 0 chr5 122395161 122395223 -30142036 + (TATG)n Simple_repeat Simple_repeat 3 65 0 1 1518 491 292 174 8 chr5 122395226 122395468 -30141791 - B4A SINE B4 -9 283 2 1 1518 498 96 0 0 chr5 122396488 122396561 -30140698 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 1 1518 183 304 36 0 chr5 122396626 122396682 -30140577 + MIRm SINE MIR 79 136 -140 1 1518 284 271 0 0 chr5 122397747 122397817 -30139442 - PB1D10 SINE Alu 0 117 48 1 1518 485 269 0 40 chr5 122397877 122398001 -30139258 - ID_B1 SINE B4 -22 202 84 1 1518 208 127 36 0 chr5 122400055 122400110 -30137149 + (TCTG)n Simple_repeat Simple_repeat 4 60 0 1 1518 309 215 0 0 chr5 122400871 122400964 -30136295 + G-rich Low_complexity Low_complexity 1 93 0 1 1518 305 149 119 0 chr5 122401529 122401596 -30135663 - MIRc SINE MIR -83 185 111 1 1518 253 396 52 0 chr5 122402483 122402637 -30134622 - MIRb SINE MIR -57 211 50 1 1518 500 267 273 9 chr5 122402680 122402754 -30134505 - B4 SINE B4 -5 287 200 1 1518 288 0 0 0 chr5 122402754 122402786 -30134473 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1518 500 267 273 9 chr5 122402786 122402938 -30134321 - B4 SINE B4 -93 199 1 1 1518 330 205 0 0 chr5 122403885 122403968 -30133291 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1518 276 271 72 72 chr5 122404199 122404338 -30132921 + MIRc SINE MIR 63 201 -67 1 1518 269 315 44 44 chr5 122404911 122405024 -30132235 + MER5A DNA MER1_type 19 131 -58 1 1518 249 57 0 0 chr5 122406287 122406322 -30130937 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1518 959 253 54 0 chr5 122408134 122408395 -30128864 - B4A SINE B4 -16 276 2 1 1518 254 250 94 42 chr5 122410621 122410717 -30126542 - MIR SINE MIR -129 133 33 1 1518 461 174 0 10 chr5 122410820 122410919 -30126340 + (CA)n Simple_repeat Simple_repeat 2 99 0 1 1518 323 292 42 63 chr5 122411217 122411395 -30125864 + MIRb SINE MIR 4 183 -85 1 1518 327 317 19 9 chr5 122412527 122412632 -30124627 - Tigger5 DNA MER2_type -4 2402 2297 1 1518 818 315 39 18 chr5 122412798 122413079 -30124180 - B4A SINE B4 -1 291 5 1 1518 500 140 9 107 chr5 122413363 122413475 -30123784 - B1_Mur2 SINE Alu 0 149 49 1 1518 308 309 12 0 chr5 122413945 122414026 -30123233 - MER117 DNA MER1_type 0 197 116 1 1518 454 194 20 0 chr5 122414147 122414245 -30123014 - B1_Mur2 SINE Alu -8 141 42 1 1518 308 93 0 0 chr5 122414293 122414336 -30122923 - PB1D9 SINE Alu -66 54 12 1 1518 264 224 29 29 chr5 122414336 122414352 -30122907 - ID_B1 SINE B4 -77 123 79 1 1518 805 284 49 42 chr5 122414602 122414867 -30122392 + B4A SINE B4 3 269 -23 1 1518 339 25 0 0 chr5 122414867 122414907 -30122352 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1518 180 0 0 0 chr5 122415205 122415225 -30122034 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 1 1518 215 61 30 0 chr5 122415341 122415374 -30121885 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1 1518 304 380 31 12 chr5 122416255 122416415 -30120844 - RSINE1 SINE B4 -1 164 2 1 1518 297 336 115 0 chr5 122417359 122417481 -30119778 + MLT1B LTR MaLR 1 136 -254 1 1518 465 66 0 0 chr5 122417507 122417568 -30119691 + (CAT)n Simple_repeat Simple_repeat 2 62 0 1 1518 189 107 0 0 chr5 122417683 122417711 -30119548 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 1 1518 308 356 107 47 chr5 122417745 122418063 -30119196 + MER102b DNA MER1_type 1 337 -4 1 1518 805 220 159 50 chr5 122418114 122418372 -30118887 - B4 SINE B4 -6 286 1 1 1518 26 0 0 0 chr5 122419146 122419172 -30118087 + AT_rich Low_complexity Low_complexity 1 26 0 1 1518 379 38 24 71 chr5 122419453 122419538 -30117721 + (CAAAAA)n Simple_repeat Simple_repeat 2 82 0 1 1518 315 0 0 0 chr5 122419649 122419684 -30117575 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 1 1518 393 22 0 0 chr5 122420057 122420103 -30117156 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1518 653 37 0 0 chr5 122420606 122420687 -30116572 + B1_Mm SINE Alu 57 137 -10 1 1518 405 0 0 0 chr5 122420687 122420732 -30116527 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 189 195 262 0 0 chr5 122421240 122421282 -30115977 + MIRc SINE MIR 83 124 -144 1 1519 226 300 0 0 chr5 122421397 122421457 -30115802 + tRNA-Ala-GCY_ tRNA tRNA 8 67 -8 1 1519 180 0 0 0 chr5 122421472 122421492 -30115767 + (CAGA)n Simple_repeat Simple_repeat 3 22 0 1 1519 296 224 64 22 chr5 122421673 122421765 -30115494 - MLT1B LTR MaLR -243 224 129 1 1519 254 143 0 0 chr5 122422016 122422058 -30115201 + L1MC1 LINE L1 6278 6319 -14 1 1519 193 225 64 55 chr5 122422431 122422536 -30114723 - L2b LINE L2 -10 3416 3303 1 1519 302 251 83 48 chr5 122424236 122424373 -30112886 + MIR3 SINE MIR 28 172 -36 1 1519 237 224 0 0 chr5 122424535 122424584 -30112675 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1519 240 370 95 7 chr5 122424773 122424920 -30112339 + B4A SINE B4 132 291 -1 1 1519 1550 58 16 0 chr5 122425023 122425213 -30112046 + B2_Mm2 SINE B2 2 194 -1 1 1519 673 292 40 27 chr5 122427017 122427239 -30110020 + B4A SINE B4 65 289 -3 1 1519 635 209 9 0 chr5 122427662 122427777 -30109482 - PB1D10 SINE Alu -1 116 1 1 1519 221 258 15 29 chr5 122427834 122427902 -30109357 + MIRc SINE MIR 81 147 -121 1 1519 231 53 0 50 chr5 122428401 122428441 -30108818 - L1MB5 LINE L1 -109 6065 6028 1 1519 545 345 67 17 chr5 122428565 122428922 -30108337 - L1MB5 LINE L1 -134 6040 5666 1 1519 379 257 0 71 chr5 122428989 122429031 -30108228 + MT2B LTR ERVL 129 249 -352 1 1519 706 84 56 0 chr5 122429031 122429138 -30108121 + B1_Mur4 SINE Alu 6 118 -32 1 1519 260 347 82 24 chr5 122429349 122429556 -30107703 + ERVL-int LTR ERVL 1331 1549 -4208 1 1519 356 243 167 46 chr5 122430069 122430177 -30107082 - ID_B1 SINE B4 -22 202 82 1 1519 295 286 232 0 chr5 122430182 122430350 -30106909 + MER102c DNA MER1_type 92 298 -33 1 1519 246 313 112 74 chr5 122430695 122431143 -30106116 + L1MB5 LINE L1 5673 6149 -25 1 1519 342 0 0 0 chr5 122431149 122431187 -30106072 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1 1519 1163 63 7 0 chr5 122431206 122431349 -30105910 - B1_Mus1 SINE Alu 0 148 5 1 1519 845 292 64 42 chr5 122432407 122432690 -30104569 - B4A SINE B4 -2 290 2 1 1519 384 252 12 107 chr5 122432916 122432976 -30104283 + MT2B LTR ERVL 112 155 -446 1 1519 1000 63 35 0 chr5 122432976 122433118 -30104141 + B1_Mus1 SINE Alu 1 147 -1 1 1519 238 154 0 0 chr5 122433286 122433325 -30103934 - B1F1 SINE Alu -102 47 9 1 1519 237 250 56 56 chr5 122433367 122433439 -30103820 - B4A SINE B4 -4 288 217 1 1519 526 242 111 22 chr5 122433468 122433603 -30103656 - RSINE1 SINE B4 -17 148 2 1 1519 449 307 85 0 chr5 122433605 122433817 -30103442 - B4A SINE B4 -62 230 1 1 1519 247 291 113 108 chr5 122433837 122433879 -30103380 - B2_Mm2 SINE B2 0 195 10 1 1519 674 261 0 7 chr5 122433879 122434022 -30103237 - RSINE1 SINE B4 -13 152 11 1 1519 780 266 34 10 chr5 122434817 122435022 -30102237 + ID_B1 SINE B4 5 214 -10 1 1519 585 268 59 6 chr5 122435626 122435795 -30101464 - B4A SINE B4 -2 290 113 1 1519 523 298 82 22 chr5 122435917 122436080 -30101179 + MER58A DNA MER1_type 1 174 -50 1 1519 771 314 37 46 chr5 122436080 122436438 -30100821 + MER44B DNA MER2_type 2 359 -346 1 1519 3345 43 0 8 chr5 122436438 122436837 -30100422 - MTA_Mm LTR MaLR 0 396 1 1 1519 588 357 79 66 chr5 122436837 122436956 -30100303 + MER44D DNA MER2_type 360 492 -213 1 1519 802 255 55 62 chr5 122436956 122437248 -30100011 - B4A SINE B4 0 292 3 1 1519 588 357 79 66 chr5 122437248 122437452 -30099807 + MER44D DNA MER2_type 493 693 -12 1 1519 761 257 34 0 chr5 122437533 122437708 -30099551 - B3A SINE B2 -16 182 2 1 1519 669 294 5 29 chr5 122437985 122438192 -30099067 + MIR SINE MIR 16 217 -45 1 1519 256 300 0 0 chr5 122438775 122438845 -30098414 - PB1D10 SINE Alu -34 83 14 1 1519 398 266 104 12 chr5 122439417 122439596 -30097663 - B3A SINE B2 -1 215 43 1 1519 207 333 0 35 chr5 122439765 122439852 -30097407 + MIRc SINE MIR 120 203 -65 1 1519 468 314 12 31 chr5 122440509 122440670 -30096589 + RSINE1 SINE B4 4 161 -4 1 1519 432 0 0 0 chr5 122440670 122440718 -30096541 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1519 215 93 23 0 chr5 122440998 122441041 -30096218 + (TCCG)n Simple_repeat Simple_repeat 2 45 0 1 1519 224 322 138 58 chr5 122441048 122441272 -30095987 - L2c LINE L2 0 3387 3146 1 1519 885 166 98 16 chr5 122441730 122441914 -30095345 + B3 SINE B2 14 212 -4 1 1519 319 285 29 81 chr5 122442515 122442687 -30094572 + RSINE1 SINE B4 3 165 0 1 1519 25 0 0 0 chr5 122442714 122442739 -30094520 + AT_rich Low_complexity Low_complexity 1 25 0 1 1519 628 290 43 11 chr5 122442742 122442930 -30094329 + B3A SINE B2 1 194 -4 1 1519 261 0 0 0 chr5 122443523 122443552 -30093707 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 1 1519 640 253 174 26 chr5 122443625 122443820 -30093439 - ID_B1 SINE B4 0 224 1 1 1519 222 259 52 0 chr5 122444376 122444434 -30092825 + MER5A DNA MER1_type 19 79 -110 1 1519 460 247 37 22 chr5 122444517 122444720 -30092539 - B4 SINE B4 -50 242 3 1 1519 240 281 67 19 chr5 122446422 122446527 -30090732 + PB1D7 SINE Alu 1 110 -10 1 1519 760 280 73 36 chr5 122446583 122446831 -30090428 + B4 SINE B4 32 288 -4 1 1519 271 332 145 51 chr5 122446887 122447302 -30089957 + L1MC4a LINE L1 7008 7485 -557 1 1519 398 241 174 36 chr5 122447466 122447604 -30089655 + ID_B1 SINE B4 67 223 -1 1 1519 200 241 56 0 chr5 122448280 122448334 -30088925 + L2b LINE L2 3132 3188 -187 1 1519 852 247 0 24 chr5 122449884 122450050 -30087209 + RSINE1 SINE B4 2 163 -2 1 1519 396 0 0 0 chr5 122450051 122450095 -30087164 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1 1519 537 157 0 0 chr5 122450101 122450190 -30087069 - B1_Mm SINE Alu -56 91 3 1 1519 245 299 138 31 chr5 122450879 122451025 -30086234 - MIR SINE MIR -78 184 29 1 1519 284 0 28 0 chr5 122451973 122452009 -30085250 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1519 585 0 0 0 chr5 122452009 122452073 -30085186 + (GA)n Simple_repeat Simple_repeat 2 66 0 1 1519 963 127 0 0 chr5 122455060 122455194 -30082065 + B1_Mur3 SINE Alu 1 134 -15 1 1519 195 274 115 41 chr5 122455494 122455616 -30081643 - MIRb SINE MIR -107 161 28 1 1519 2015 97 3 70 chr5 122455965 122456321 -30080938 + IAPLTR1a_Mm LTR ERVK 1 332 -5 1 1519 182 188 0 0 chr5 122457255 122457287 -30079972 - MIR SINE MIR -120 142 111 1 1519 238 343 32 11 chr5 122457290 122457419 -30079840 + MIRb SINE MIR 17 152 -124 1 1519 902 247 72 22 chr5 122458657 122458934 -30078325 - B4A SINE B4 0 292 2 1 1519 245 274 107 59 chr5 122459377 122459503 -30077756 + MIRc SINE MIR 26 159 -109 1 1519 663 226 0 46 chr5 122459513 122459666 -30077593 + ID_B1 SINE B4 67 212 -12 1 1519 1430 99 11 0 chr5 122459728 122459919 -30077340 - B2_Mm1t SINE B2 0 193 1 1 1519 540 248 34 27 chr5 122460360 122460509 -30076750 - L1MD LINE L1 -562 5797 5648 1 1519 2368 149 121 25 chr5 122461473 122461883 -30075376 + RLTR11A LTR ERVK 2 456 -72 1 1519 441 0 0 0 chr5 122461883 122461932 -30075327 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1519 2368 149 121 25 chr5 122461932 122462002 -30075257 + RLTR11A LTR ERVK 457 528 0 1 1519 675 138 383 48 chr5 122462887 122463054 -30074205 + URR1B DNA MER1_type 3 225 0 1 1519 514 299 82 29 chr5 122463112 122463319 -30073940 + B4A SINE B4 29 246 -46 1 1519 594 202 35 0 chr5 122463332 122463446 -30073813 + B3 SINE B2 1 118 -98 1 1519 331 258 0 0 chr5 122463498 122463564 -30073695 + B4A SINE B4 222 287 -5 1 1519 459 92 0 0 chr5 122463574 122463639 -30073620 + (TA)n Simple_repeat Simple_repeat 1 65 0 1 1519 291 354 17 17 chr5 122465479 122465594 -30071665 - L2a LINE L2 -34 3392 3278 1 1519 267 311 71 39 chr5 122465712 122465905 -30071354 - MIRm SINE MIR -54 222 22 1 1519 288 186 0 0 chr5 122467868 122467927 -30069332 + CT-rich Low_complexity Low_complexity 1 59 0 1 1519 317 217 14 0 chr5 122468202 122468271 -30068988 + MIRb SINE MIR 59 128 -140 1 1519 281 345 23 0 chr5 122468477 122468595 -30068664 + MIR SINE MIR 36 158 -110 1 1519 481 144 0 46 chr5 122469957 122470044 -30067215 + PB1D10 SINE Alu 27 109 -8 1 1519 288 278 54 132 chr5 122470095 122470261 -30066998 + MER53 DNA hAT 31 183 -10 1 1519 222 91 0 0 chr5 122470290 122470323 -30066936 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1 1519 311 287 64 9 chr5 122470454 122470563 -30066696 - MIR SINE MIR -48 214 100 1 1519 297 146 109 0 chr5 122470792 122470847 -30066412 + ID_B1 SINE B4 155 215 -9 1 1519 738 94 0 33 chr5 122470868 122470989 -30066270 + B1_Mur4 SINE Alu 34 150 0 1 1519 277 254 90 0 chr5 122471108 122471175 -30066084 + B4A SINE B4 7 79 -213 1 1519 234 0 0 0 chr5 122471176 122471202 -30066057 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1519 424 251 15 8 chr5 122471338 122471476 -30065783 - MTD LTR MaLR -207 193 50 1 1519 621 249 83 44 chr5 122471486 122471667 -30065592 + B4A SINE B4 105 292 0 1 1519 519 95 0 0 chr5 122471698 122471772 -30065487 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 1 1519 418 267 0 0 chr5 122472160 122472261 -30064998 + PB1D7 SINE Alu 20 120 0 1 1519 529 294 20 0 chr5 122472362 122472508 -30064751 + L1MC LINE L1 4453 4601 -1545 1 1519 847 76 7 29 chr5 122472508 122472644 -30064615 + B1_Mur4 SINE Alu 18 150 0 1 1519 449 318 89 47 chr5 122472787 122473092 -30064167 + L1MC LINE L1 4806 5115 -1031 1 1519 746 218 114 11 chr5 122473092 122473268 -30063991 + B3A SINE B2 2 195 -3 1 1519 449 318 89 47 chr5 122473268 122473391 -30063868 + L1MC LINE L1 5116 5252 -894 1 1519 287 246 136 27 chr5 122473591 122473708 -30063551 - MIRb SINE MIR -113 163 35 1 1519 195 69 0 0 chr5 122474164 122474193 -30063066 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1519 321 26 0 0 chr5 122474798 122474836 -30062423 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1519 201 147 0 0 chr5 122475024 122475058 -30062201 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 1 1519 1101 82 0 27 chr5 122475065 122475215 -30062044 - B1_Mus1 SINE Alu -2 146 1 1 1519 344 290 73 37 chr5 122475215 122475351 -30061908 - MLT1K LTR MaLR -252 343 203 1 1519 573 55 0 0 chr5 122475658 122475731 -30061528 + (CATCC)n Simple_repeat Simple_repeat 5 77 0 1 1519 196 286 59 51 chr5 122475740 122475858 -30061401 - MIR SINE MIR -136 126 8 1 1519 183 326 158 32 chr5 122476054 122476149 -30061110 - MER5A DNA MER1_type -74 115 9 1 1519 913 146 0 7 chr5 122476157 122476295 -30060964 + B1_Mus1 SINE Alu 5 141 -7 1 1519 330 26 0 0 chr5 122476296 122476335 -30060924 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1 1519 709 260 93 57 chr5 122476745 122477079 -30060180 - ORR1E LTR MaLR -5 354 9 1 1519 1011 167 131 0 chr5 122477081 122477279 -30059980 - URR1A DNA MER1_type -1 225 2 1 1519 236 266 15 15 chr5 122477357 122477422 -30059837 - MIRb SINE MIR -1 267 203 1 1519 611 204 208 34 chr5 122477463 122477641 -30059618 + B3 SINE B2 3 211 -5 1 1519 387 89 0 0 chr5 122477697 122477753 -30059506 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1519 1395 87 38 0 chr5 122477758 122477942 -30059317 + B2_Mm2 SINE B2 1 191 -4 1 1519 1026 131 14 0 chr5 122478319 122478464 -30058795 - B1_Mur4 SINE Alu -2 148 2 1 1519 261 0 0 0 chr5 122478471 122478500 -30058759 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1519 504 116 0 0 chr5 122478500 122478595 -30058664 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 1519 709 209 7 41 chr5 122478595 122478740 -30058519 - B3 SINE B2 -76 140 1 1 1519 357 309 70 21 chr5 122478763 122478905 -30058354 - B4A SINE B4 -143 149 1 1 1519 2075 112 11 103 chr5 122479404 122479763 -30057496 + ORR1A3 LTR MaLR 1 326 0 1 1519 186 250 34 45 chr5 122480316 122480404 -30056855 + L2 LINE L2 2980 3066 -353 1 1519 189 0 0 0 chr5 122480632 122480653 -30056606 + (G)n Simple_repeat Simple_repeat 1 21 0 1 1519 186 194 28 0 chr5 122481179 122481215 -30056044 - L2b LINE L2 -16 3359 3323 1 1519 243 248 19 68 chr5 122481879 122482000 -30055259 - MIR SINE MIR -93 175 57 1 1519 247 131 32 32 chr5 122482322 122482385 -30054874 + (TCTG)n Simple_repeat Simple_repeat 4 66 0 1 1519 292 269 57 19 chr5 122484203 122484309 -30052950 + MLT1G3 LTR MaLR 15 124 -471 1 1519 252 0 0 0 chr5 122484822 122484850 -30052409 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1519 486 0 0 0 chr5 122484850 122484903 -30052356 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1519 430 281 13 52 chr5 122485594 122485748 -30051511 + MIR SINE MIR 67 214 -48 1 1519 621 268 45 13 chr5 122485798 122485953 -30051306 + RSINE1 SINE B4 2 161 -4 1 1519 296 296 70 24 chr5 122486296 122486474 -30050785 - MTEa LTR MaLR -4 375 169 1 1519 416 275 129 48 chr5 122486752 122487121 -30050138 + L1M4b LINE L1 2970 3354 -3980 1 1519 625 281 52 12 chr5 122487121 122487294 -30049965 + B3A SINE B2 1 180 -18 1 1519 416 306 115 50 chr5 122487294 122487311 -30049948 + L1M4b LINE L1 3157 3172 -3834 1 1519 189 0 0 0 chr5 122487311 122487332 -30049927 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1519 416 306 115 50 chr5 122487332 122487548 -30049711 + L1M4b LINE L1 3173 3412 -3594 1 1519 723 145 139 139 chr5 122487994 122488210 -30049049 + B3 SINE B2 1 216 0 1 1519 530 303 87 55 chr5 122488717 122489028 -30048231 - ORR1E LTR MaLR -32 327 7 1 1519 858 159 198 0 chr5 122489885 122490067 -30047192 - URR1B DNA MER1_type -7 218 1 1 1519 870 219 67 14 chr5 122490154 122490362 -30046897 + ID_B1 SINE B4 2 220 -4 1 1519 209 122 49 0 chr5 122490378 122490419 -30046840 + GA-rich Low_complexity Low_complexity 1 43 0 1 1519 208 216 0 6 chr5 122490993 122491056 -30046203 - MIRm SINE MIR -90 172 111 1 1519 274 368 41 13 chr5 122491419 122491627 -30045632 - L2b LINE L2 -268 3107 2895 1 1519 231 222 19 0 chr5 122491955 122492009 -30045250 - MIR SINE MIR -164 98 44 1 1519 198 0 0 0 chr5 122492036 122492058 -30045201 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 1 1519 258 125 0 0 chr5 122492155 122492203 -30045056 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1519 397 289 12 6 chr5 122492652 122492791 -30044468 - MIRc SINE MIR -96 166 36 1 1519 191 264 38 0 chr5 122493362 122493415 -30043844 + L2a LINE L2 3032 3086 -340 1 1519 225 0 0 0 chr5 122493566 122493591 -30043668 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 1 1519 264 294 58 20 chr5 122493774 122493943 -30043316 - MIR SINE MIR -40 228 47 1 1519 656 165 0 0 chr5 122494428 122494537 -30042722 + B1_Mus1 SINE Alu 5 113 -35 1 1519 478 272 38 155 chr5 122494435 122494538 -30042721 + B4 SINE B4 96 199 -93 1 1519 537 16 0 0 chr5 122494538 122494600 -30042659 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1519 478 272 38 155 chr5 122494600 122494709 -30042550 + B4 SINE B4 200 283 -9 1 1519 300 91 0 0 chr5 122494718 122494762 -30042497 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1519 201 240 65 28 chr5 122494806 122494912 -30042347 - L2b LINE L2 -291 3096 2990 1 1519 338 195 115 0 chr5 122495327 122495414 -30041845 + PB1D10 SINE Alu 21 117 0 1 1519 197 83 0 27 chr5 122495431 122495468 -30041791 + (TAAAAA)n Simple_repeat Simple_repeat 1 36 0 1 1519 306 0 0 0 chr5 122495934 122495968 -30041291 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1519 22 0 0 0 chr5 122498996 122499018 -30038241 + AT_rich Low_complexity Low_complexity 1 22 0 1 1519 318 311 0 78 chr5 122499544 122499736 -30037523 + G-rich Low_complexity Low_complexity 3 179 0 1 1519 192 97 0 0 chr5 122499833 122499864 -30037395 + (CGG)n Simple_repeat Simple_repeat 1 31 0 1 1519 25 65 0 0 chr5 122500087 122500133 -30037126 + GC_rich Low_complexity Low_complexity 1 46 0 1 1519 22 0 0 0 chr5 122500138 122500160 -30037099 + GC_rich Low_complexity Low_complexity 1 22 0 2 1519 21 57 0 0 chr5 122500288 122500323 -30036936 + GC_rich Low_complexity Low_complexity 1 35 0 3 1519 216 0 0 0 chr5 122500862 122500886 -30036373 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1519 306 0 0 0 chr5 122501938 122501972 -30035287 + (GA)n Simple_repeat Simple_repeat 1 34 0 5 1519 385 286 29 0 chr5 122502091 122502196 -30035063 + L1MC4 LINE L1 7423 7530 -512 6 1519 212 154 0 0 chr5 122502198 122502237 -30035022 + G-rich Low_complexity Low_complexity 1 39 0 7 1519 258 105 0 0 chr5 122502261 122502299 -30034960 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1519 225 0 0 0 chr5 122502547 122502572 -30034687 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1519 440 283 70 20 chr5 122504549 122504733 -30032526 + LTR33 LTR ERVL 13 214 -301 1 1519 286 267 152 22 chr5 122505463 122505555 -30031704 - B4 SINE B4 -2 290 187 1 1519 221 281 0 0 chr5 122505567 122505624 -30031635 - ID4_ SINE ID -25 58 2 1 1519 22 35 0 0 chr5 122505634 122505663 -30031596 + AT_rich Low_complexity Low_complexity 1 29 0 1 1519 775 212 0 74 chr5 122505693 122505741 -30031518 - RSINE1 SINE B4 -13 152 114 1 1519 925 178 130 0 chr5 122505741 122505926 -30031333 + B3 SINE B2 2 210 -6 1 1519 468 0 0 0 chr5 122505927 122505979 -30031280 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 1 1519 775 212 0 74 chr5 122505979 122506091 -30031168 - RSINE1 SINE B4 -52 113 2 1 1519 180 0 0 0 chr5 122506571 122506591 -30030668 + (TTC)n Simple_repeat Simple_repeat 2 21 0 1 1519 502 257 92 4 chr5 122507090 122507245 -30030014 - ID_B1 SINE B4 -4 220 58 1 1519 278 238 0 0 chr5 122507322 122507385 -30029874 - ID4 SINE ID -16 67 5 1 1519 785 274 18 23 chr5 122507709 122507926 -30029333 + B3 SINE B2 1 216 0 2 1519 453 260 30 0 chr5 122508135 122508235 -30029024 - PB1D7 SINE Alu -17 103 1 2 1519 210 274 0 0 chr5 122508535 122508586 -30028673 - MIRc SINE MIR -105 163 113 2 1519 246 62 0 0 chr5 122509415 122509447 -30027812 + (CACCC)n Simple_repeat Simple_repeat 3 34 0 2 1519 224 30 30 0 chr5 122509760 122509793 -30027466 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2 1519 374 283 22 0 chr5 122510156 122510248 -30027011 + MIRc SINE MIR 57 150 -118 2 1519 205 252 230 10 chr5 122510372 122510472 -30026787 - MIR SINE MIR -28 234 113 2 1519 24 0 0 0 chr5 122511050 122511074 -30026185 + GC_rich Low_complexity Low_complexity 1 24 0 2 1519 191 282 0 43 chr5 122511459 122511622 -30025637 + (TATATG)n Simple_repeat Simple_repeat 6 161 0 2 1519 562 344 0 0 chr5 122511660 122511840 -30025419 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1519 430 296 17 34 chr5 122511916 122512091 -30025168 - B4A SINE B4 -120 172 1 3 1519 220 268 0 0 chr5 122512706 122512762 -30024497 + G-rich Low_complexity Low_complexity 1 56 0 3 1519 544 246 154 7 chr5 122513130 122513273 -30023986 - RSINE1 SINE B4 0 165 2 3 1519 633 270 0 0 chr5 122513368 122513505 -30023754 - ID_B1 SINE B4 -7 217 81 3 1519 718 226 36 36 chr5 122514076 122514273 -30022986 - ID_B1 SINE B4 -24 268 78 3 1519 336 197 26 26 chr5 122514626 122514704 -30022555 + MTEa LTR MaLR 302 379 0 3 1519 268 306 0 27 chr5 122514734 122514808 -30022451 - MLT1L LTR MaLR -338 272 201 3 1519 27 29 0 0 chr5 122514899 122514933 -30022326 + AT_rich Low_complexity Low_complexity 1 34 0 3 1519 398 141 14 0 chr5 122514943 122515014 -30022245 + B3 SINE B2 2 73 -143 3 1519 709 226 93 21 chr5 122515803 122515997 -30021262 - ID_B1 SINE B4 -8 216 9 3 1519 4155 198 63 7 chr5 122516104 122517003 -30020256 + Lx9 LINE L1 6512 7461 -183 4 1519 1034 83 0 0 chr5 122517022 122517166 -30020093 + B1_Mus1 SINE Alu 3 146 -2 4 1519 474 18 0 0 chr5 122517166 122517221 -30020038 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1519 297 331 59 37 chr5 122517303 122517438 -30019821 + B4A SINE B4 10 147 -145 4 1519 342 0 0 0 chr5 122517491 122517529 -30019730 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1519 23 0 0 0 chr5 122517529 122517552 -30019707 + AT_rich Low_complexity Low_complexity 1 23 0 4 1519 240 266 62 31 chr5 122518368 122518465 -30018794 + MIR SINE MIR 28 127 -135 4 1519 252 241 0 0 chr5 122518516 122518570 -30018689 - MIR SINE MIR -110 98 45 4 1519 268 235 123 0 chr5 122519013 122519094 -30018165 - B4A SINE B4 -195 97 7 4 1519 25 0 0 0 chr5 122519439 122519464 -30017795 + AT_rich Low_complexity Low_complexity 1 25 0 4 1519 259 313 32 41 chr5 122519820 122519977 -30017282 + MIRb SINE MIR 67 225 -43 5 1519 282 164 0 0 chr5 122519992 122520047 -30017212 + CT-rich Low_complexity Low_complexity 3 57 0 5 1519 344 289 26 9 chr5 122520097 122520212 -30017047 - PB1 SINE Alu -8 119 3 5 1519 1430 91 0 5 chr5 122520412 122520599 -30016660 + B2_Mm2 SINE B2 2 187 -8 5 1519 360 0 0 0 chr5 122520610 122520650 -30016609 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 5 1519 201 204 41 0 chr5 122521723 122521772 -30015487 + L2b LINE L2 3322 3372 -3 5 1519 296 307 168 13 chr5 122521777 122521932 -30015327 + MIR SINE MIR 15 193 -69 5 1519 345 302 0 40 chr5 122522148 122522248 -30015011 - MLT1K LTR MaLR -335 260 165 5 1519 198 143 0 0 chr5 122522727 122522762 -30014497 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1519 247 247 15 0 chr5 122523879 122523979 -30013280 + L2c LINE L2 2977 3080 -339 5 1519 640 320 93 27 chr5 122524338 122524787 -30012472 - L1MB4 LINE L1 -84 6096 5618 6 1519 198 318 36 36 chr5 122524811 122524922 -30012337 - MIRb SINE MIR -110 158 48 6 1519 231 194 46 9 chr5 122524933 122525042 -30012217 + GA-rich Low_complexity Low_complexity 1 113 0 6 1519 29 0 0 0 chr5 122525243 122525272 -30011987 + AT_rich Low_complexity Low_complexity 1 29 0 6 1519 558 43 0 0 chr5 122525697 122525766 -30011493 + (GGA)n Simple_repeat Simple_repeat 3 71 0 6 1519 403 235 19 38 chr5 122525766 122525872 -30011387 - MTC LTR MaLR -180 241 138 6 1519 422 225 72 9 chr5 122525898 122526011 -30011248 + B3 SINE B2 81 188 -28 6 1519 26 30 0 0 chr5 122526028 122526061 -30011198 + AT_rich Low_complexity Low_complexity 1 33 0 6 1519 1259 103 37 16 chr5 122526136 122526324 -30010935 + B2_Mm2 SINE B2 1 192 -3 6 1519 252 0 0 0 chr5 122526916 122526944 -30010315 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1519 569 301 62 29 chr5 122527163 122527435 -30009824 + RMER20B LTR ERVK 140 419 -208 7 1519 996 46 8 0 chr5 122527829 122527960 -30009299 - B1_Mus1 SINE Alu -6 142 11 7 1519 494 170 20 0 chr5 122527977 122528077 -30009182 + PB1D9 SINE Alu 19 120 0 7 1519 275 230 11 54 chr5 122528197 122528289 -30008970 + Charlie5 DNA MER1_type 22 109 -2515 7 1519 316 259 12 12 chr5 122528409 122528495 -30008764 + B4A SINE B4 186 271 -21 7 1519 2675 131 0 14 chr5 122528514 122528931 -30008328 + MTC LTR MaLR 11 421 0 7 1519 625 251 79 53 chr5 122528960 122529149 -30008110 + B3 SINE B2 1 194 -22 7 1519 371 215 20 51 chr5 122529142 122529240 -30008019 + B3 SINE B2 122 216 0 7 1519 796 176 25 32 chr5 122529937 122530095 -30007164 - B3 SINE B2 -13 203 47 7 1519 360 0 0 0 chr5 122530473 122530513 -30006746 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1519 691 243 52 7 chr5 122530528 122530681 -30006578 - B3A SINE B2 -37 161 2 8 1519 380 263 21 21 chr5 122530681 122530775 -30006484 - B4A SINE B4 -197 95 2 8 1519 725 174 64 14 chr5 122531359 122531499 -30005760 + B1F SINE Alu 3 149 0 8 1519 819 209 19 12 chr5 122531978 122532138 -30005121 + RSINE1 SINE B4 3 163 -2 8 1519 290 291 0 25 chr5 122532142 122532223 -30005036 + ID_B1 SINE B4 145 223 -1 8 1519 300 227 13 0 chr5 122532340 122532415 -30004844 + PB1D10 SINE Alu 14 89 -28 8 1519 567 132 0 0 chr5 122532415 122532506 -30004753 + (TG)n Simple_repeat Simple_repeat 2 92 0 8 1519 198 0 0 0 chr5 122532506 122532528 -30004731 + (GA)n Simple_repeat Simple_repeat 1 22 0 8 1519 746 179 7 7 chr5 122532536 122532671 -30004588 + B1_Mur1 SINE Alu 15 149 0 8 1519 256 204 111 0 chr5 122532672 122532726 -30004533 + B3 SINE B2 3 62 -154 8 1519 587 155 256 8 chr5 122532792 122532909 -30004350 + B1_Mus1 SINE Alu 3 148 0 9 1519 262 309 30 95 chr5 122533294 122533357 -30003902 - B2_Mm2 SINE B2 -8 187 1 9 1519 621 263 15 0 chr5 122533357 122533494 -30003765 - RSINE1 SINE B4 -25 140 2 9 1519 282 162 0 0 chr5 122533498 122533572 -30003687 + T-rich Low_complexity Low_complexity 4 77 0 9 1519 275 345 0 12 chr5 122533584 122533669 -30003590 - PB1D10 SINE Alu 0 117 34 9 1519 1150 95 0 0 chr5 122533699 122533847 -30003412 + B1_Mus1 SINE Alu 1 148 0 9 1519 540 298 27 94 chr5 122534033 122534212 -30003047 - ORR1A0 LTR MaLR 0 346 174 9 1519 2354 84 48 28 chr5 122534212 122534568 -30002691 - Lx LINE L1 0 6654 6292 9 1519 540 298 27 94 chr5 122534568 122534759 -30002500 - ORR1A0 LTR MaLR -173 173 1 9 1519 448 325 77 11 chr5 122535905 122536166 -30001093 - L1MC3 LINE L1 -66 7719 7442 9 1519 548 231 0 0 chr5 122536180 122536288 -30000971 - PB1D10 SINE Alu -8 109 2 9 1519 2582 189 126 25 chr5 122536496 122536562 -30000697 + RMER19C LTR ERVK 1 65 -546 1 1519 1357 93 5 16 chr5 122536562 122536748 -30000511 - B2_Mm1t SINE B2 -8 185 2 1 1519 2582 189 126 25 chr5 122536748 122537236 -30000023 + RMER19C LTR ERVK 66 610 -1 1 1519 444 123 0 40 chr5 122537236 122537312 -29999947 + MurERV4_19-int LTR ERVK 1 73 -5707 1 1519 414 219 0 0 chr5 122537441 122537546 -29999713 + (CA)n Simple_repeat Simple_repeat 1 105 0 1 1519 3417 50 2 0 chr5 122537703 122538102 -29999157 - MTB LTR MaLR 0 400 1 1 1519 692 232 186 0 chr5 122538158 122538335 -29998924 + B3 SINE B2 5 214 -2 1 1519 1194 184 37 11 chr5 122538385 122538548 -29998711 + ORR1D1 LTR MaLR 1 162 -212 1 1519 224 71 48 0 chr5 122538548 122538590 -29998669 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 1 1519 1194 205 41 17 chr5 122538590 122538733 -29998526 + ORR1D1 LTR MaLR 163 312 -58 1 1519 355 235 57 75 chr5 122539296 122539402 -29997857 + PB1D7 SINE Alu 14 120 0 1 1519 1328 99 10 10 chr5 122539413 122539606 -29997653 + B2_Mm1t SINE B2 1 193 0 1 1519 554 223 46 86 chr5 122539606 122539691 -29997568 + B1_Mur2 SINE Alu 1 92 -57 1 1519 1315 160 61 5 chr5 122539691 122539905 -29997354 - URR1A DNA MER1_type 0 226 1 1 1519 554 223 46 86 chr5 122539905 122539971 -29997288 + B1_Mur2 SINE Alu 93 146 -3 1 1519 271 200 0 0 chr5 122540001 122540046 -29997213 + B2_Mm2 SINE B2 1 45 -150 1 1519 216 0 0 0 chr5 122540057 122540081 -29997178 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1519 1150 76 0 0 chr5 122540081 122540226 -29997033 - B1_Mus1 SINE Alu 0 148 4 1 1519 351 254 104 30 chr5 122540613 122540628 -29996631 + ID_B1 SINE B4 80 223 -1 1 1519 664 134 118 0 chr5 122540628 122540747 -29996512 + B1_Mus2 SINE Alu 14 146 -1 1 1519 210 255 20 0 chr5 122540751 122540802 -29996457 + GA-rich Low_complexity Low_complexity 2 53 0 1 1519 301 239 10 89 chr5 122540870 122540971 -29996288 + PB1D10 SINE Alu 24 116 -1 1 1519 781 223 290 10 chr5 122541543 122541846 -29995413 - MTD LTR MaLR -14 405 18 1 1519 2101 114 42 6 chr5 122541864 122542217 -29995042 + RMER6A LTR ERVK 11 376 -380 1 1519 187 300 93 73 chr5 122542260 122542411 -29994848 - L2a LINE L2 -51 3375 3222 1 1519 254 282 16 93 chr5 122544997 122545025 -29992234 + B4A SINE B4 49 76 -216 1 1519 608 204 0 42 chr5 122545025 122545143 -29992116 + PB1D10 SINE Alu 3 115 -2 1 1519 254 282 16 93 chr5 122545143 122545243 -29992016 + B4A SINE B4 77 167 -125 1 1519 355 256 22 104 chr5 122545144 122545160 -29992099 + MT2B LTR ERVL 153 157 -444 1 1519 649 164 41 8 chr5 122545160 122545283 -29991976 + B1_Mur4 SINE Alu 1 127 -23 1 1519 285 183 0 0 chr5 122545379 122545446 -29991813 + T-rich Low_complexity Low_complexity 16 82 0 1 1519 1182 82 0 0 chr5 122545446 122545592 -29991667 - B1_Mm SINE Alu 0 147 2 1 1519 285 183 0 0 chr5 122545592 122545606 -29991653 + T-rich Low_complexity Low_complexity 2 15 0 1 1519 591 204 163 16 chr5 122545617 122545801 -29991458 - B3 SINE B2 -4 212 2 1 1519 347 324 40 10 chr5 122546193 122546336 -29990923 - MIRb SINE MIR -64 198 53 1 1519 256 368 22 14 chr5 122546864 122547002 -29990257 - YREP_Mm Unknown Unknown -1493 319 181 1 1519 575 190 26 0 chr5 122546890 122547006 -29990253 + ID_B1 SINE B4 106 224 0 1 1519 1314 78 56 6 chr5 122547172 122547352 -29989907 + B2_Mm2 SINE B2 2 190 -5 1 1519 328 290 9 108 chr5 122547398 122547581 -29989678 - MLT1A LTR MaLR -245 163 1 1 1519 243 0 0 0 chr5 122547727 122547754 -29989505 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1519 405 90 0 0 chr5 122547754 122547820 -29989439 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1519 908 259 84 63 chr5 122547852 122548136 -29989123 - B4 SINE B4 0 292 3 1 1519 285 287 43 0 chr5 122548302 122548396 -29988863 + MLT1D LTR MaLR 272 369 -136 1 1519 195 42 0 0 chr5 122548709 122548733 -29988526 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 1 1519 311 325 24 16 chr5 122549041 122549166 -29988093 + YREP_Mm Unknown Unknown 171 296 -1516 1 1519 558 236 0 0 chr5 122549069 122549175 -29988084 - ID_B1 SINE B4 -26 198 93 1 1519 303 187 112 71 chr5 122549289 122549302 -29987957 + PB1D7 SINE Alu 13 114 -6 1 1519 336 129 341 0 chr5 122549302 122549387 -29987872 + ID_B1 SINE B4 105 218 -6 1 1519 1209 61 0 0 chr5 122549398 122549545 -29987714 + B1_Mm SINE Alu 1 147 0 1 1519 545 105 0 11 chr5 122549545 122549632 -29987627 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 1 1519 1208 45 0 43 chr5 122549632 122549820 -29987439 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1519 325 306 57 24 chr5 122549823 122549947 -29987312 + L1MEg LINE L1 1842 1969 -4115 1 1519 452 113 14 0 chr5 122549977 122550048 -29987211 + ID_B1 SINE B4 152 223 -1 1 1519 227 235 20 0 chr5 122550050 122550101 -29987158 + B1F2 SINE Alu 1 52 -97 1 1519 200 139 0 0 chr5 122550448 122550484 -29986775 - L2a LINE L2 -374 3052 3017 1 1519 1033 123 6 6 chr5 122550519 122550699 -29986560 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 1519 203 88 29 0 chr5 122551118 122551152 -29986107 + (GGA)n Simple_repeat Simple_repeat 1 35 0 1 1519 258 213 34 20 chr5 122551544 122551635 -29985624 + MIRc SINE MIR 81 172 -36 1 1520 555 205 101 16 chr5 122553531 122553660 -29983599 - ID_B1 SINE B4 -3 221 82 1 1520 212 0 36 0 chr5 122553690 122553718 -29983541 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1 1520 246 62 0 0 chr5 122553718 122553750 -29983509 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1520 210 191 0 0 chr5 122553979 122554026 -29983233 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1520 968 193 91 10 chr5 122554120 122554246 -29983013 + B3 SINE B2 2 125 -91 1 1520 180 0 0 0 chr5 122554246 122554266 -29982993 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1520 968 193 91 10 chr5 122554266 122554338 -29982921 + B3 SINE B2 126 215 -1 1 1520 181 342 14 14 chr5 122555184 122555258 -29982001 + MIRc SINE MIR 114 187 -81 1 1520 437 252 34 48 chr5 122555317 122555463 -29981796 + B1F SINE Alu 1 144 -5 1 1520 1214 68 0 0 chr5 122555470 122555618 -29981641 + B1_Mus1 SINE Alu 1 148 0 1 1520 292 170 5 0 chr5 122555774 122555838 -29981421 - B1F1 SINE Alu -1 146 84 1 1520 589 111 33 0 chr5 122555865 122555955 -29981304 - B1_Mur4 SINE Alu -15 135 43 1 1520 226 213 0 21 chr5 122555958 122556054 -29981205 + CT-rich Low_complexity Low_complexity 2 95 0 1 1520 274 257 0 67 chr5 122556100 122556117 -29981142 - ID_B1 SINE B4 -77 147 82 1 1520 323 185 0 0 chr5 122556117 122556171 -29981088 - B1_Mus2 SINE Alu -93 54 1 1 1520 246 287 109 65 chr5 122556936 122556967 -29980292 + B4 SINE B4 51 87 -205 1 1520 491 170 41 89 chr5 122556967 122557090 -29980169 + B1_Mus1 SINE Alu 3 119 -29 1 1520 268 278 8 107 chr5 122557167 122557288 -29979971 + ID_B1 SINE B4 111 219 -5 1 1520 460 245 9 9 chr5 122557183 122557290 -29979969 + B1_Mur1 SINE Alu 40 146 -3 1 1520 256 202 6 58 chr5 122557371 122557470 -29979789 + PB1 SINE Alu 39 120 0 1 1520 488 220 6 0 chr5 122558593 122558752 -29978507 + (TG)n Simple_repeat Simple_repeat 2 161 0 1 1520 336 281 0 0 chr5 122558775 122558953 -29978306 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1520 200 176 0 0 chr5 122559812 122559846 -29977413 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1520 332 286 44 29 chr5 122559989 122560126 -29977133 - L1M5 LINE L1 -1949 4197 4059 1 1520 397 302 6 39 chr5 122560185 122560355 -29976904 + (TG)n Simple_repeat Simple_repeat 1 164 0 1 1520 361 53 0 35 chr5 122560355 122560413 -29976846 + (TA)n Simple_repeat Simple_repeat 1 56 0 1 1520 397 302 6 39 chr5 122560413 122560468 -29976791 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1520 495 300 16 22 chr5 122560614 122560798 -29976461 - MIR SINE MIR -65 197 15 1 1520 621 230 7 7 chr5 122561239 122561375 -29975884 + ID_B1 SINE B4 81 216 -8 1 1520 357 241 12 0 chr5 122561965 122562048 -29975211 - PB1D10 SINE Alu -32 85 2 1 1520 661 187 16 4 chr5 122562425 122562573 -29974686 + B1F1 SINE Alu 5 150 0 1 1520 276 291 3 62 chr5 122562764 122562877 -29974382 + ID4_ SINE ID 3 116 -36 1 1520 222 261 0 0 chr5 122563089 122563135 -29974124 + C-rich Low_complexity Low_complexity 3 48 0 1 1520 1461 139 0 18 chr5 122563384 122563611 -29973648 - URR1B DNA MER1_type 0 225 3 1 1520 245 246 0 42 chr5 122564203 122564275 -29972984 - MIR SINE MIR -104 158 90 1 1520 1194 62 0 0 chr5 122564532 122564677 -29972582 + B1_Mm SINE Alu 3 147 0 1 1520 488 270 0 0 chr5 122564856 122564967 -29972292 + PB1D7 SINE Alu 10 120 0 1 1520 437 265 17 0 chr5 122565141 122565258 -29972001 + B4A SINE B4 5 123 -169 1 1520 288 361 0 0 chr5 122565587 122565695 -29971564 + MER103 DNA DNA 10 117 -49 1 1520 304 213 0 62 chr5 122565754 122565819 -29971440 + B4 SINE B4 51 111 -181 1 1520 246 95 76 38 chr5 122565822 122565953 -29971306 + (TA)n Simple_repeat Simple_repeat 1 136 0 1 1520 26 64 0 0 chr5 122565955 122566002 -29971257 + AT_rich Low_complexity Low_complexity 1 47 0 1 1520 1464 66 16 0 chr5 122566009 122566191 -29971068 - B2_Mm2 SINE B2 -8 187 3 1 1520 296 336 14 63 chr5 122566191 122566334 -29970925 + B4A SINE B4 95 230 -62 1 1520 1215 160 30 5 chr5 122566334 122566535 -29970724 + B3 SINE B2 1 206 -10 1 1520 1163 63 0 0 chr5 122566559 122566701 -29970558 + B1_Mus1 SINE Alu 2 143 -5 1 1520 435 267 67 34 chr5 122567197 122567375 -29969884 + B4 SINE B4 42 225 -67 1 1520 580 275 77 5 chr5 122567378 122567572 -29969687 + B3 SINE B2 3 210 -6 1 1520 1137 121 71 6 chr5 122567574 122567757 -29969502 + B2_Mm2 SINE B2 1 195 0 1 1520 665 191 128 15 chr5 122567800 122567933 -29969326 - B1_Mur3 SINE Alu -1 148 1 1 1520 24 32 0 0 chr5 122567934 122567965 -29969294 + AT_rich Low_complexity Low_complexity 1 31 0 2 1520 774 153 87 7 chr5 122567969 122568107 -29969152 + B1_Mur4 SINE Alu 1 149 -1 2 1520 306 0 0 0 chr5 122568108 122568142 -29969117 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1520 212 378 10 67 chr5 122568759 122568952 -29968307 + MIRb SINE MIR 53 234 -34 2 1520 591 188 0 0 chr5 122569063 122569180 -29968079 + GA-rich Low_complexity Low_complexity 4 120 0 2 1520 2181 96 4 6 chr5 122569352 122569670 -29967589 + ORR1A2 LTR MaLR 1 368 -11 2 1520 439 148 23 0 chr5 122569670 122569758 -29967501 + GA-rich Low_complexity Low_complexity 2 91 0 2 1520 1495 0 11 0 chr5 122569758 122569933 -29967326 + (GAA)n Simple_repeat Simple_repeat 3 179 0 2 1520 302 300 20 0 chr5 122570202 122570302 -29966957 + MER53 DNA hAT 61 162 -31 2 1520 1304 27 0 0 chr5 122570336 122570483 -29966776 - B1_Mus1 SINE Alu -1 147 1 2 1520 186 71 0 0 chr5 122570533 122570561 -29966698 + (TC)n Simple_repeat Simple_repeat 1 28 0 2 1520 1288 239 61 0 chr5 122570561 122570858 -29966401 - RLTR12A LTR ERVK -253 315 1 2 1520 486 0 0 0 chr5 122570860 122570914 -29966345 + (GGA)n Simple_repeat Simple_repeat 2 55 0 2 1520 494 192 0 16 chr5 122571377 122571499 -29965760 + (CACCAT)n Simple_repeat Simple_repeat 4 123 0 2 1520 4687 144 70 5 chr5 122571678 122572525 -29964734 + RMER13B LTR ERVK 7 908 0 2 1520 2916 52 3 0 chr5 122573177 122573522 -29963737 + ORR1A0 LTR MaLR 1 346 0 2 1520 242 29 29 0 chr5 122573627 122573662 -29963597 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1520 1050 83 0 0 chr5 122573662 122573794 -29963465 - B1_Mus2 SINE Alu -13 134 3 2 1520 382 341 0 8 chr5 122574169 122574293 -29962966 + ID_B1 SINE B4 82 204 -20 2 1520 741 79 0 0 chr5 122574295 122574396 -29962863 + (GA)n Simple_repeat Simple_repeat 2 102 0 2 1520 361 215 117 11 chr5 122574427 122574521 -29962738 + B1F2 SINE Alu 33 136 -13 2 1520 364 182 12 48 chr5 122574731 122574898 -29962361 + G-rich Low_complexity Low_complexity 1 161 0 2 1520 322 321 52 42 chr5 122575459 122575651 -29961608 + MER20B DNA MER1_type 339 532 -251 2 1520 231 258 194 0 chr5 122575666 122575759 -29961500 + MER58A DNA MER1_type 1 111 -113 2 1520 1528 68 16 0 chr5 122575906 122576097 -29961162 + B2_Mm2 SINE B2 1 194 -1 2 1520 582 137 0 0 chr5 122576097 122576192 -29961067 + (GAA)n Simple_repeat Simple_repeat 1 95 0 2 1520 1205 89 0 11 chr5 122576192 122576374 -29960885 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 1520 285 329 0 0 chr5 122576457 122576527 -29960732 + ID4_ SINE ID 1 70 -13 2 1520 473 274 67 27 chr5 122576531 122576681 -29960578 + B3A SINE B2 43 198 0 2 1520 545 227 108 8 chr5 122576714 122576843 -29960416 + B1_Mur1 SINE Alu 2 143 -6 2 1520 264 202 148 20 chr5 122576868 122576969 -29960290 - MTE-int LTR MaLR -231 1349 1236 2 1520 367 261 187 6 chr5 122577859 122578030 -29959229 + B4A SINE B4 5 206 -86 2 1520 231 36 0 0 chr5 122578037 122578065 -29959194 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1520 1077 56 0 0 chr5 122578075 122578217 -29959042 + B1_Mus1 SINE Alu 7 148 0 2 1520 530 276 28 7 chr5 122578227 122578369 -29958890 + RSINE1 SINE B4 9 153 -12 2 1520 1181 71 147 0 chr5 122578406 122578576 -29958683 + B2_Mm2 SINE B2 1 195 0 2 1520 935 61 30 0 chr5 122578598 122578730 -29958529 + B1_Mus1 SINE Alu 11 146 -2 2 1520 198 0 0 0 chr5 122578731 122578753 -29958506 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 2 1520 302 102 0 58 chr5 122578905 122578957 -29958302 - B3A SINE B2 -145 53 5 2 1520 471 278 17 9 chr5 122579009 122579125 -29958134 - RSINE1 SINE B4 -4 161 45 2 1520 225 231 222 37 chr5 122580146 122580254 -29957005 + MIR3 SINE MIR 36 163 -45 2 1520 890 181 173 16 chr5 122580722 122580913 -29956346 - ID_B1 SINE B4 -2 222 2 2 1520 184 279 16 16 chr5 122581183 122581245 -29956014 + MIR SINE MIR 88 149 -59 2 1520 313 281 87 9 chr5 122581670 122581785 -29955474 + ID_B1 SINE B4 80 203 -21 2 1520 895 113 7 29 chr5 122582698 122582835 -29954424 + B1_Mus1 SINE Alu 2 135 -13 2 1520 1238 54 0 0 chr5 122583342 122583489 -29953770 + B1_Mus1 SINE Alu 2 148 0 2 1520 210 37 0 0 chr5 122584141 122584168 -29953091 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2 1520 432 0 0 0 chr5 122584170 122584218 -29953041 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 2 1520 785 144 0 15 chr5 122584218 122584352 -29952907 - B1_Mur2 SINE Alu -12 137 6 2 1520 1661 27 0 0 chr5 122584381 122584564 -29952695 - B2_Mm1a SINE B2 -9 184 2 2 1520 538 219 50 92 chr5 122584641 122584782 -29952477 - B1_Mur2 SINE Alu -1 148 14 2 1520 234 308 16 70 chr5 122584679 122584808 -29952451 - MT2B LTR ERVL -330 271 150 2 1520 181 139 47 0 chr5 122585595 122585638 -29951621 + CT-rich Low_complexity Low_complexity 2 46 0 2 1520 295 292 90 0 chr5 122586116 122586205 -29951054 - BC1_Mm scRNA scRNA -55 97 1 2 1520 492 256 124 0 chr5 122586400 122586529 -29950730 + RSINE1 SINE B4 4 148 -17 2 1520 262 282 169 7 chr5 122586749 122586857 -29950402 + MIRb SINE MIR 34 147 -121 2 1520 493 217 19 19 chr5 122587449 122587557 -29949702 - MER77 LTR ERVL -497 110 3 2 1520 291 293 134 51 chr5 122587706 122587922 -29949337 + MLT1H2 LTR MaLR 212 445 -44 2 1520 320 277 220 0 chr5 122587959 122588136 -29949123 + MLT1L LTR MaLR 307 522 -88 2 1520 223 228 17 17 chr5 122589422 122589480 -29947779 - ID4_ SINE ID -2 81 24 2 1520 183 222 0 0 chr5 122589550 122589595 -29947664 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1520 586 293 28 33 chr5 122589605 122589785 -29947474 - B4A SINE B4 -113 179 1 2 1520 343 256 10 62 chr5 122589829 122589925 -29947334 + MIRb SINE MIR 42 132 -136 2 1520 309 336 97 13 chr5 122590024 122590095 -29947164 - HAL1-3A_ME LINE L1 -717 2141 2059 2 1520 1149 95 0 0 chr5 122590095 122590243 -29947016 - B1_Mus1 SINE Alu 0 148 1 2 1520 1184 150 72 63 chr5 122590248 122590469 -29946790 + URR1A DNA MER1_type 4 226 0 2 1520 309 336 97 13 chr5 122590469 122590545 -29946714 - HAL1-3A_ME LINE L1 -808 2050 1977 2 1520 647 203 13 0 chr5 122590547 122590700 -29946559 + (TATG)n Simple_repeat Simple_repeat 2 156 0 2 1520 1694 190 163 32 chr5 122590700 122591136 -29946123 - MT2A LTR ERVL -40 493 1 2 1520 189 296 81 10 chr5 122591250 122591349 -29945910 + L2b LINE L2 2974 3079 -296 2 1520 519 248 33 8 chr5 122591526 122591648 -29945611 - RSINE1 SINE B4 -19 146 22 2 1520 188 86 0 28 chr5 122591700 122591736 -29945523 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1520 518 236 73 20 chr5 122592725 122592876 -29944383 + B3A SINE B2 5 163 -35 2 1520 255 61 0 0 chr5 122592878 122592911 -29944348 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 2 1520 1262 34 7 0 chr5 122592912 122593059 -29944200 - B1_Mus1 SINE Alu 0 148 1 2 1520 1389 82 0 53 chr5 122593087 122593293 -29943966 + B2_Mm2 SINE B2 1 195 0 2 1520 1310 20 0 0 chr5 122593294 122593441 -29943818 + B1_Mm SINE Alu 1 147 0 2 1520 298 266 42 11 chr5 122593657 122593752 -29943507 - MER119 DNA MER1_type -248 335 238 2 1520 414 85 0 0 chr5 122594132 122594191 -29943068 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 2 1520 655 174 89 22 chr5 122594197 122594332 -29942927 - B1_Mur2 SINE Alu 0 149 6 2 1520 246 339 29 72 chr5 122594235 122594442 -29942817 - MT2B2 LTR ERVL -320 264 67 2 1520 342 293 34 17 chr5 122594523 122594545 -29942714 + PB1D7 SINE Alu 1 21 -99 2 1520 411 21 0 0 chr5 122594545 122594593 -29942666 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1520 368 274 11 0 chr5 122594593 122594688 -29942571 + PB1D10 SINE Alu 22 117 0 2 1520 1263 41 0 0 chr5 122594692 122594839 -29942420 + B1_Mus2 SINE Alu 1 147 0 2 1520 318 106 0 0 chr5 122594849 122594896 -29942363 + (A)n Simple_repeat Simple_repeat 1 47 0 2 1520 475 267 38 15 chr5 122594907 122595040 -29942219 + ID_B1 SINE B4 2 137 -87 2 1520 584 135 9 55 chr5 122595036 122595146 -29942113 - RLTR28 LTR ERVL -419 105 1 2 1520 350 213 53 0 chr5 122595146 122595221 -29942038 + ID_B1 SINE B4 134 212 -12 2 1520 330 26 0 0 chr5 122595221 122595260 -29941999 + (TC)n Simple_repeat Simple_repeat 2 40 0 2 1520 225 0 0 0 chr5 122595260 122595285 -29941974 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1520 398 287 8 24 chr5 122595945 122596070 -29941189 + C-rich Low_complexity Low_complexity 6 128 0 2 1520 214 29 57 0 chr5 122596083 122596118 -29941141 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 2 1520 368 206 101 20 chr5 122596970 122597069 -29940190 + PB1D7 SINE Alu 14 120 0 2 1520 226 316 86 43 chr5 122597093 122597195 -29940064 + ORR1E LTR MaLR 6 111 -248 2 1520 1144 48 0 58 chr5 122597195 122597333 -29939926 + B1_Mus2 SINE Alu 1 137 -10 2 1520 183 42 0 0 chr5 122597333 122597357 -29939902 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1520 1144 48 0 58 chr5 122597357 122597374 -29939885 + B1_Mus2 SINE Alu 138 147 0 2 1520 226 316 86 43 chr5 122597374 122597433 -29939826 + ORR1E LTR MaLR 112 173 -186 2 1520 588 144 8 75 chr5 122597396 122597516 -29939743 + PB1D9 SINE Alu 9 120 0 2 1520 276 222 133 67 chr5 122597516 122597531 -29939728 + B4 SINE B4 94 237 -55 2 1520 297 111 0 0 chr5 122597690 122597735 -29939524 - RMER10B LTR ERVL -6 392 348 2 1520 507 29 15 0 chr5 122597776 122597844 -29939415 - B1_Mus2 SINE Alu 0 147 79 2 1520 1330 89 50 0 chr5 122597848 122598028 -29939231 - B2_Mm2 SINE B2 -6 189 1 2 1520 1658 148 32 82 chr5 122598028 122598404 -29938855 - RMER10B LTR ERVL -41 357 1 2 1520 273 281 270 39 chr5 122598529 122598707 -29938552 - B4A SINE B4 -71 221 3 2 1520 387 132 0 0 chr5 122599158 122599226 -29938033 + (T)n Simple_repeat Simple_repeat 1 68 0 3 1520 1009 124 0 7 chr5 122599226 122599372 -29937887 - B1_Mus2 SINE Alu 0 147 3 3 1520 1927 148 57 39 chr5 122599408 122599794 -29937465 + RMER10B LTR ERVL 2 394 -4 3 1520 22 0 0 0 chr5 122599845 122599867 -29937392 + AT_rich Low_complexity Low_complexity 1 22 0 3 1520 1176 41 14 0 chr5 122599869 122600014 -29937245 - B1_Mus2 SINE Alu 0 147 1 3 1520 892 254 23 5 chr5 122600044 122600262 -29936997 + ID_B1 SINE B4 2 223 -1 3 1520 266 212 101 82 chr5 122600268 122600389 -29936870 + PB1D10 SINE Alu 9 91 -26 3 1520 276 284 11 11 chr5 122600557 122600646 -29936613 + MER58A DNA MER1_type 29 117 -107 3 1520 1483 192 68 141 chr5 122600740 122601236 -29936023 + RMER4A LTR ERVK 1 460 -6 3 1520 299 250 0 0 chr5 122601730 122601790 -29935469 - RSINE1 SINE B4 -104 61 2 3 1520 1515 46 0 0 chr5 122601950 122602125 -29935134 + B2_Mm1a SINE B2 1 175 -18 3 1520 230 0 33 0 chr5 122602133 122602163 -29935096 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 3 1520 547 247 205 6 chr5 122602170 122602341 -29934918 + B3 SINE B2 1 205 -11 3 1520 1263 34 0 0 chr5 122602535 122602681 -29934578 - B1_Mm SINE Alu 0 147 2 3 1520 665 98 195 8 chr5 122602698 122602821 -29934438 - B1_Mus1 SINE Alu -2 146 1 3 1520 1328 78 22 0 chr5 122602970 122603149 -29934110 - B2_Mm1a SINE B2 -10 183 1 3 1520 211 244 0 0 chr5 122603527 122603572 -29933687 + T-rich Low_complexity Low_complexity 1 45 0 3 1520 576 239 69 0 chr5 122603609 122603739 -29933520 - ID_B1 SINE B4 -9 215 77 3 1520 210 200 0 43 chr5 122603845 122603892 -29933367 + C-rich Low_complexity Low_complexity 2 46 0 3 1520 23 33 0 0 chr5 122603921 122603951 -29933308 + AT_rich Low_complexity Low_complexity 1 30 0 3 1520 284 277 81 40 chr5 122604060 122604184 -29933075 + L1MB5 LINE L1 5881 6009 -165 3 1520 221 294 0 0 chr5 122604319 122604387 -29932872 + PB1D10 SINE Alu 45 112 -5 3 1520 219 36 0 0 chr5 122604414 122604442 -29932817 + (G)n Simple_repeat Simple_repeat 1 28 0 3 1520 447 237 8 55 chr5 122605124 122605260 -29931999 + B1_Mur1 SINE Alu 2 125 -23 3 1520 389 296 67 47 chr5 122605292 122605351 -29931908 - B4 SINE B4 -140 152 1 3 1520 578 156 0 0 chr5 122605351 122605441 -29931818 - B3 SINE B2 -126 90 1 3 1520 796 134 14 14 chr5 122605451 122605595 -29931664 - B1_Mur4 SINE Alu 0 150 7 3 1520 542 317 23 37 chr5 122605633 122605849 -29931410 + ID_B1 SINE B4 8 220 -4 3 1520 402 326 40 7 chr5 122606148 122606296 -29930963 + MIR SINE MIR 44 196 -66 3 1520 500 233 146 8 chr5 122606297 122606427 -29930832 - B1_Mur3 SINE Alu -1 148 1 3 1520 290 328 49 25 chr5 122606463 122606585 -29930674 - RSINE1 SINE B4 -39 126 2 3 1520 392 241 0 25 chr5 122607743 122607824 -29929435 - ID4_ SINE ID -3 80 2 3 1520 204 222 48 24 chr5 122608156 122608239 -29929020 + C-rich Low_complexity Low_complexity 3 87 0 3 1520 228 163 0 0 chr5 122608417 122608460 -29928799 + (CCG)n Simple_repeat Simple_repeat 3 45 0 3 1520 186 43 0 0 chr5 122608522 122608545 -29928714 + (CTG)n Simple_repeat Simple_repeat 3 25 0 3 1520 994 100 0 14 chr5 122609568 122609710 -29927549 - B1_Mus1 SINE Alu -6 142 3 3 1520 457 208 118 2 chr5 122609756 122609888 -29927371 - B1_Mur4 SINE Alu 0 150 6 3 1520 393 256 35 0 chr5 122610061 122610147 -29927112 - B4 SINE B4 -203 89 1 3 1520 646 282 26 79 chr5 122610165 122610392 -29926867 - B3 SINE B2 -1 215 1 3 1520 886 60 92 57 chr5 122610437 122610578 -29926681 - B1_Mm SINE Alu -1 146 1 3 1520 241 220 211 42 chr5 122610589 122610684 -29926575 - PB1D10 SINE Alu -6 111 1 3 1520 432 257 18 9 chr5 122610711 122610821 -29926438 - PB1D9 SINE Alu -8 112 2 3 1520 310 284 25 108 chr5 122611024 122611182 -29926077 + RSINE1 SINE B4 11 155 -10 3 1520 887 103 7 0 chr5 122611243 122611379 -29925880 + B1_Mus1 SINE Alu 11 147 -1 3 1520 429 299 102 11 chr5 122611390 122611566 -29925693 + B3A SINE B2 5 196 -2 3 1520 544 238 24 8 chr5 122611577 122611704 -29925555 + B1_Mus1 SINE Alu 6 133 -16 3 1520 235 282 0 66 chr5 122612445 122612536 -29924723 + MT2B2 LTR ERVL 155 239 -345 3 1520 504 154 41 152 chr5 122612464 122612542 -29924717 + B1_Mus1 SINE Alu 6 76 -72 3 1520 990 56 26 71 chr5 122612542 122612696 -29924563 + B1_Mus2 SINE Alu 1 147 0 3 1520 504 154 41 152 chr5 122612696 122612762 -29924497 + B1_Mus1 SINE Alu 77 134 -14 3 1520 278 169 15 30 chr5 122613324 122613391 -29923868 - ID_B1 SINE B4 -31 193 128 3 1520 268 166 33 21 chr5 122613778 122613850 -29923409 - B1_Mus2 SINE Alu 0 117 49 3 1520 277 247 59 0 chr5 122614002 122614087 -29923172 - ID_B1 SINE B4 -2 222 133 3 1520 265 234 46 15 chr5 122614946 122615011 -29922248 + PB1D10 SINE Alu 42 108 -9 3 1520 418 238 76 0 chr5 122615012 122615117 -29922142 + PB1D9 SINE Alu 1 113 -7 3 1520 471 221 56 24 chr5 122615604 122615729 -29921530 + RSINE1 SINE B4 2 130 -35 3 1520 341 192 210 10 chr5 122615841 122615941 -29921318 - PB1D9 SINE Alu 0 120 1 3 1520 529 292 47 130 chr5 122617046 122617345 -29919914 - B4 SINE B4 -18 274 1 3 1520 542 211 139 35 chr5 122617366 122617538 -29919721 - B3 SINE B2 -11 205 16 3 1520 585 28 0 0 chr5 122619761 122619832 -29917427 + (TTTC)n Simple_repeat Simple_repeat 3 73 0 3 1520 631 144 76 8 chr5 122619838 122619957 -29917302 - B1_Mur4 SINE Alu -18 132 6 3 1520 1172 47 0 7 chr5 122619991 122620140 -29917119 - B1_Mus1 SINE Alu 0 148 1 3 1520 1321 68 0 6 chr5 122620143 122620320 -29916939 - B2_Mm2 SINE B2 -19 176 1 3 1520 453 185 2 12 chr5 122623534 122623637 -29913622 - B1_Mur4 SINE Alu -34 116 13 3 1520 180 306 14 27 chr5 122625247 122625321 -29911938 + L4 LINE RTE 1927 1999 -30 3 1520 751 110 17 0 chr5 122626011 122626129 -29911130 + PB1D9 SINE Alu 1 120 0 3 1520 225 0 0 0 chr5 122626133 122626158 -29911101 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1520 1190 48 0 0 chr5 122626761 122626908 -29910351 - B1_Mm SINE Alu 0 147 1 3 1520 1603 31 0 0 chr5 122626944 122627137 -29910122 + B2_Mm1a SINE B2 1 193 0 3 1520 1196 88 11 21 chr5 122627195 122627381 -29909878 - B2_Mm1t SINE B2 -8 185 2 3 1520 1024 61 164 0 chr5 122628005 122628170 -29909089 + B2_Mm1t SINE B2 1 192 -1 3 1520 1166 55 0 0 chr5 122628261 122628407 -29908852 + B1_Mm SINE Alu 2 147 0 3 1520 332 188 202 18 chr5 122628631 122628745 -29908514 + B1_Mur1 SINE Alu 14 148 -1 3 1520 303 205 96 26 chr5 122628764 122628879 -29908380 + B3A SINE B2 28 150 -48 3 1520 512 160 27 39 chr5 122628914 122629034 -29908225 + PB1D9 SINE Alu 14 141 -8 3 1520 261 0 0 0 chr5 122629352 122629381 -29907878 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1520 316 222 12 58 chr5 122629448 122629534 -29907725 - B4 SINE B4 -69 96 14 3 1520 371 221 63 0 chr5 122629545 122629640 -29907619 - B1F2 SINE Alu -9 140 40 3 1520 254 73 0 24 chr5 122630128 122630170 -29907089 + (CCCCCA)n Simple_repeat Simple_repeat 1 41 0 3 1520 958 55 0 0 chr5 122630308 122630435 -29906824 - B1_Mus2 SINE Alu -20 127 1 3 1520 1330 228 179 38 chr5 122630525 122631027 -29906232 - RMER4B LTR ERVK -12 573 1 3 1520 722 242 20 45 chr5 122631071 122631270 -29905989 - B3A SINE B2 -3 195 2 3 1520 427 299 6 82 chr5 122631284 122631455 -29905804 - B3A SINE B2 0 198 41 3 1520 634 180 77 15 chr5 122631500 122631630 -29905629 - B1_Mur1 SINE Alu -2 147 10 3 1520 569 305 30 55 chr5 122631739 122632010 -29905249 - B4A SINE B4 -21 271 8 3 1520 203 179 17 35 chr5 122632563 122632621 -29904638 + (TA)n Simple_repeat Simple_repeat 2 58 0 3 1520 319 235 32 13 chr5 122632663 122632768 -29904491 - B1_Mur1 SINE Alu 0 150 42 3 1520 1040 97 0 0 chr5 122632813 122632957 -29904302 - B2_Mm2 SINE B2 -51 144 1 3 1520 1538 47 0 0 chr5 122633231 122633421 -29903838 - B2_Mm1a SINE B2 0 193 4 3 1520 955 121 0 21 chr5 122633488 122633624 -29903635 + B1_Mus2 SINE Alu 1 135 -12 3 1520 195 42 0 0 chr5 122633624 122633648 -29903611 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1520 763 199 211 0 chr5 122633666 122633832 -29903427 + B3 SINE B2 2 202 -14 3 1520 204 250 0 0 chr5 122633888 122633936 -29903323 + T-rich Low_complexity Low_complexity 1 48 0 3 1520 279 0 0 0 chr5 122633995 122634026 -29903233 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 3 1520 563 283 11 28 chr5 122634178 122634356 -29902903 + B3 SINE B2 15 189 -27 3 1520 297 0 0 0 chr5 122635232 122635265 -29901994 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1520 1018 88 0 20 chr5 122635265 122635406 -29901853 - B1_Mus1 SINE Alu -9 139 1 3 1520 1238 79 51 0 chr5 122635809 122635987 -29901272 - B2_Mm1a SINE B2 -6 187 1 3 1520 207 0 0 0 chr5 122636010 122636033 -29901226 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1520 435 149 0 0 chr5 122636052 122636126 -29901133 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 3 1520 375 273 0 11 chr5 122636139 122636228 -29901031 - B4 SINE B4 -114 178 91 3 1520 315 164 33 0 chr5 122636249 122636310 -29900949 - L1MC1 LINE L1 -19 6314 6252 4 1520 385 192 12 49 chr5 122636406 122636488 -29900771 - B3 SINE B2 -137 79 1 4 1520 674 226 0 0 chr5 122636536 122636660 -29900599 - RSINE1 SINE B4 -39 126 3 4 1520 1027 179 137 0 chr5 122636663 122636897 -29900362 - MTD LTR MaLR 0 419 154 4 1520 959 135 7 0 chr5 122636921 122637069 -29900190 + B1_Mur3 SINE Alu 1 149 0 4 1520 210 71 0 0 chr5 122637077 122637105 -29900154 + (TG)n Simple_repeat Simple_repeat 1 28 0 4 1520 565 215 79 36 chr5 122637116 122637256 -29900003 - RSINE1 SINE B4 -17 148 3 4 1520 588 248 13 13 chr5 122637258 122637409 -29899850 - ID_B1 SINE B4 -70 154 4 4 1520 364 255 20 10 chr5 122637706 122637805 -29899454 + PB1D10 SINE Alu 18 117 0 4 1520 1053 96 0 7 chr5 122637883 122638030 -29899229 - B1_Mus2 SINE Alu -1 146 1 4 1520 902 205 19 51 chr5 122638056 122638272 -29898987 - B3 SINE B2 -5 211 3 4 1520 186 43 0 0 chr5 122638288 122638311 -29898948 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 4 1520 1196 41 0 0 chr5 122638364 122638511 -29898748 + B1_Mus2 SINE Alu 1 147 0 4 1520 781 223 20 0 chr5 122638722 122638870 -29898389 + RSINE1 SINE B4 3 153 -12 4 1520 429 20 0 0 chr5 122638872 122638922 -29898337 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1520 999 113 0 0 chr5 122638985 122639126 -29898133 + B1_Mus1 SINE Alu 1 141 -7 4 1520 189 107 0 0 chr5 122639436 122639464 -29897795 + (TTA)n Simple_repeat Simple_repeat 2 29 0 4 1520 265 136 0 0 chr5 122639464 122639508 -29897751 - Lx4A LINE L1 -5 7053 7010 4 1520 24 0 0 0 chr5 122639518 122639542 -29897717 + AT_rich Low_complexity Low_complexity 1 24 0 4 1520 488 248 83 30 chr5 122639767 122639900 -29897359 - RSINE1 SINE B4 -17 148 9 4 1520 237 139 0 0 chr5 122640307 122640350 -29896909 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 4 1520 1158 41 7 0 chr5 122640352 122640498 -29896761 - B1_Mus2 SINE Alu 0 147 1 4 1520 212 86 0 28 chr5 122640537 122640573 -29896686 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 4 1520 1103 131 15 45 chr5 122640908 122641108 -29896151 - B2_Mm2 SINE B2 -1 194 1 4 1520 1127 185 5 9 chr5 122641142 122641355 -29895904 - B3 SINE B2 -4 212 1 4 1520 466 276 0 0 chr5 122641508 122641624 -29895635 - PB1D9 SINE Alu 0 120 5 4 1520 1602 161 210 0 chr5 122641918 122642266 -29894993 + MTC LTR MaLR 1 421 0 4 1520 1173 54 0 0 chr5 122642278 122642426 -29894833 + B1_Mus1 SINE Alu 1 148 0 4 1520 243 0 0 0 chr5 122642426 122642453 -29894806 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1520 443 233 173 0 chr5 122642576 122642709 -29894550 - B3A SINE B2 -42 156 1 4 1520 6201 30 1 0 chr5 122642855 122643596 -29893663 + RLTR4_Mm LTR ERV1 1 742 0 4 1520 49389 15 1 0 chr5 122643596 122649291 -29887968 + RLTR4_MM-int LTR ERV1 1 5702 -1899 4 1520 1778 15 0 0 chr5 122649272 122649476 -29887783 + RLTR4_MM-int LTR ERV1 7398 7601 0 4 1520 6201 30 1 0 chr5 122649476 122650217 -29887042 + RLTR4_Mm LTR ERV1 1 742 0 4 1520 4663 119 71 26 chr5 122650839 122651695 -29885564 + RMER17A2 LTR ERVK 1 895 -11 4 1520 950 128 0 20 chr5 122651744 122651896 -29885363 - B1_Mur2 SINE Alu 0 149 1 4 1520 337 108 368 25 chr5 122652494 122652605 -29884654 - B2_Mm2 SINE B2 0 195 47 4 1520 876 143 112 0 chr5 122652637 122652798 -29884461 - B2_Mm1t SINE B2 -14 179 1 4 1520 183 42 0 0 chr5 122653643 122653667 -29883592 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1520 1081 66 0 0 chr5 122653667 122653804 -29883455 - B1_Mus2 SINE Alu -9 138 2 4 1520 1102 203 21 8 chr5 122654588 122654826 -29882433 + B4 SINE B4 33 273 -19 4 1520 423 38 0 0 chr5 122654828 122654881 -29882378 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1520 1083 51 7 0 chr5 122655163 122655300 -29881959 + B1_Mus1 SINE Alu 2 139 -9 4 1520 366 23 0 0 chr5 122655300 122655343 -29881916 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 4 1520 689 239 6 12 chr5 122655384 122655545 -29881714 - RSINE1 SINE B4 -2 163 4 4 1520 226 202 39 0 chr5 122655612 122655671 -29881588 - B1F SINE Alu 0 149 60 4 1520 210 156 0 0 chr5 122655671 122655716 -29881543 + GA-rich Low_complexity Low_complexity 1 45 0 4 1520 707 11 0 22 chr5 122655744 122655833 -29881426 + (TTTC)n Simple_repeat Simple_repeat 3 89 0 4 1520 803 87 8 38 chr5 122656237 122656369 -29880890 - RLTR15 LTR ERVK -11 348 221 4 1520 1124 48 0 58 chr5 122656369 122656525 -29880734 + B1_Mm SINE Alu 1 147 0 4 1520 234 0 0 0 chr5 122656525 122656551 -29880708 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1520 1223 158 9 0 chr5 122656551 122656766 -29880493 - RLTR15 LTR ERVK -124 235 19 4 1520 375 194 28 0 chr5 122657128 122657200 -29880059 - ID4 SINE ID -8 75 2 4 1520 660 252 197 85 chr5 122658077 122658407 -29878852 - MTE2a LTR MaLR 0 379 13 4 1520 673 222 117 17 chr5 122658641 122658820 -29878439 - B3 SINE B2 -18 198 2 4 1520 369 0 0 0 chr5 122659355 122659396 -29877863 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1520 197 324 0 0 chr5 122660774 122660848 -29876411 + MIR SINE MIR 111 184 -78 4 1520 1159 108 37 5 chr5 122661399 122661586 -29875673 - B2_Mm2 SINE B2 -2 193 1 4 1520 338 205 0 12 chr5 122661671 122661755 -29875504 + CT-rich Low_complexity Low_complexity 3 85 0 4 1520 886 149 7 0 chr5 122661756 122661897 -29875362 - B1_Mur3 SINE Alu -6 143 2 4 1520 209 161 0 0 chr5 122661904 122661935 -29875324 + polypyrimidine Low_complexity Low_complexity 3 33 0 4 1520 1226 27 0 0 chr5 122661935 122662081 -29875178 - B1_Mus2 SINE Alu 0 147 2 4 1520 201 143 0 0 chr5 122662757 122662792 -29874467 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1520 835 77 0 0 chr5 122662795 122662912 -29874347 - B1_Mm SINE Alu 0 147 31 4 1520 1462 37 5 16 chr5 122662913 122663104 -29874155 - B2_Mm2 SINE B2 -6 189 1 4 1520 1136 82 65 11 chr5 122663154 122663338 -29873921 - B2_Mm2 SINE B2 -1 194 1 4 1520 246 62 0 0 chr5 122663392 122663424 -29873835 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1520 685 212 7 7 chr5 122663424 122663562 -29873697 - RSINE1 SINE B4 -25 140 3 4 1520 445 311 49 49 chr5 122663666 122663869 -29873390 + B4A SINE B4 74 276 -16 4 1520 378 0 0 0 chr5 122664559 122664601 -29872658 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1520 1506 16 0 25 chr5 122664833 122665002 -29872257 + B2_Mm1a SINE B2 1 169 -24 4 1520 1625 44 0 0 chr5 122665002 122665207 -29872052 + L1Md_T LINE L1 6377 6581 -1 4 1520 1506 16 0 25 chr5 122665207 122665234 -29872025 + B2_Mm1a SINE B2 170 192 -1 4 1520 503 275 67 0 chr5 122665243 122665421 -29871838 + B3A SINE B2 1 190 -8 4 1520 203 103 26 0 chr5 122665432 122665471 -29871788 + (TA)n Simple_repeat Simple_repeat 2 41 0 4 1520 286 341 47 23 chr5 122665491 122665620 -29871639 + B4 SINE B4 73 204 -88 4 1520 605 240 16 0 chr5 122665516 122665645 -29871614 + B1_Mur1 SINE Alu 11 141 -8 4 1520 563 236 125 0 chr5 122665674 122665818 -29871441 - RSINE1 SINE B4 -2 163 2 4 1520 517 155 36 18 chr5 122665826 122665938 -29871321 - PB1D10 SINE Alu -3 114 1 4 1520 394 235 9 64 chr5 122666497 122666606 -29870653 + ID_B1 SINE B4 84 186 -38 4 1520 219 36 0 0 chr5 122666622 122666650 -29870609 + (CAAGC)n Simple_repeat Simple_repeat 2 29 0 4 1520 211 351 93 68 chr5 122667383 122667417 -29869842 - B3 SINE B2 0 216 10 4 1520 711 239 0 77 chr5 122667417 122667585 -29869674 - RSINE1 SINE B4 0 165 11 4 1520 207 0 0 0 chr5 122667592 122667615 -29869644 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 4 1520 1230 61 0 0 chr5 122667615 122667762 -29869497 - B1_Mus1 SINE Alu 0 148 2 4 1520 265 282 57 28 chr5 122669398 122669504 -29867755 + MIRc SINE MIR 47 155 -53 4 1520 353 284 67 52 chr5 122670459 122670652 -29866607 - MER68 LTR ERVL -118 445 250 4 1520 303 261 33 22 chr5 122670629 122670719 -29866540 - PB1D10 SINE Alu -17 100 10 4 1520 273 277 12 24 chr5 122670645 122670730 -29866529 - ID_B1 SINE B4 -62 162 79 4 1520 186 43 0 0 chr5 122670992 122671015 -29866244 + (CTGGGG)n Simple_repeat Simple_repeat 1 23 0 4 1520 477 305 59 52 chr5 122671015 122671275 -29865984 + B4A SINE B4 12 274 -18 4 1520 694 237 127 41 chr5 122671348 122671616 -29865643 + B4 SINE B4 1 291 -1 4 1520 363 44 0 0 chr5 122673059 122673104 -29864155 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1520 569 201 259 29 chr5 122673191 122673365 -29863894 - B3 SINE B2 0 216 3 4 1520 321 89 0 0 chr5 122673382 122673427 -29863832 + (TTTTC)n Simple_repeat Simple_repeat 4 48 0 4 1520 1164 82 0 0 chr5 122673427 122673574 -29863685 - B1_Mm SINE Alu 0 147 1 4 1520 225 65 0 0 chr5 122673693 122673724 -29863535 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4 1520 1255 41 0 0 chr5 122673726 122673873 -29863386 - B1_Mus2 SINE Alu 0 147 1 4 1520 668 260 80 37 chr5 122673877 122674065 -29863194 - B3A SINE B2 0 198 3 4 1520 326 208 27 27 chr5 122674066 122674140 -29863119 - B4A SINE B4 -195 97 24 4 1520 186 43 0 0 chr5 122674401 122674424 -29862835 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1520 293 211 0 14 chr5 122675674 122675746 -29861513 - ID2 SINE ID -1 82 12 4 1520 252 0 0 0 chr5 122675857 122675885 -29861374 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 4 1520 278 29 0 0 chr5 122676252 122676287 -29860972 + U2 snRNA snRNA 1 35 -153 4 1520 242 332 128 28 chr5 122676317 122676528 -29860731 - B4A SINE B4 -59 233 2 4 1520 544 260 20 27 chr5 122676595 122676745 -29860514 - ID_B1 SINE B4 0 224 76 5 1520 387 0 0 0 chr5 122676766 122676809 -29860450 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1520 1544 48 0 41 chr5 122676926 122677122 -29860137 - B2_Mm1a SINE B2 -5 188 1 5 1520 295 88 0 44 chr5 122677130 122677193 -29860066 - B1F SINE Alu -4 171 68 5 1520 1140 124 0 0 chr5 122677198 122677376 -29859883 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 1520 183 162 0 0 chr5 122677389 122677426 -29859833 + CT-rich Low_complexity Low_complexity 4 40 0 5 1520 1013 103 0 27 chr5 122677452 122677602 -29859657 - B1_Mus2 SINE Alu -1 146 1 5 1520 1966 197 67 23 chr5 122678020 122678558 -29858701 - RMER6A LTR ERVK -12 744 60 5 1520 216 0 0 0 chr5 122678558 122678582 -29858677 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 5 1520 822 134 215 0 chr5 122678582 122678629 -29858630 - RMER6A LTR ERVK -402 59 3 5 1520 291 150 0 0 chr5 122678805 122678865 -29858394 + (G)n Simple_repeat Simple_repeat 1 60 0 5 1520 357 24 0 0 chr5 122679168 122679210 -29858049 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1520 346 236 189 0 chr5 122679220 122679326 -29857933 - RSINE1 SINE B4 -36 129 4 5 1520 24 0 0 0 chr5 122679345 122679369 -29857890 + AT_rich Low_complexity Low_complexity 1 24 0 5 1520 637 243 192 6 chr5 122679378 122679560 -29857699 - B3 SINE B2 0 216 1 5 1520 791 206 23 25 chr5 122679606 122679815 -29857444 - B3A SINE B2 -3 213 1 5 1520 541 207 62 18 chr5 122679816 122679929 -29857330 - PB1D9 SINE Alu -1 119 2 5 1520 699 287 6 11 chr5 122680034 122680217 -29857042 - B3A SINE B2 -9 189 8 5 1520 212 381 18 49 chr5 122680248 122680411 -29856848 - L2a LINE L2 0 3426 3269 5 1520 839 153 36 14 chr5 122680750 122680889 -29856370 - B1_Mur2 SINE Alu -7 142 1 5 1520 366 42 0 0 chr5 122680968 122681016 -29856243 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1520 299 341 102 41 chr5 122681018 122681284 -29855975 - B4A SINE B4 -9 283 2 5 1520 1229 47 0 0 chr5 122681808 122681956 -29855303 + B1_Mus1 SINE Alu 1 148 0 5 1520 1825 221 122 70 chr5 122682104 122682717 -29854542 - RLTR40 LTR ERVK -15 802 158 5 1520 1182 47 0 20 chr5 122682726 122682877 -29854382 - B1_Mus1 SINE Alu 0 148 1 5 1520 284 269 75 0 chr5 122682901 122682994 -29854265 - PB1D10 SINE Alu -11 106 7 5 1521 448 338 85 18 chr5 122683870 122684210 -29853049 + L1MB5 LINE L1 5797 6159 -15 5 1521 685 279 82 67 chr5 122684416 122684685 -29852574 + B4A SINE B4 2 274 -18 5 1521 252 0 0 0 chr5 122684696 122684724 -29852535 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1521 671 278 57 6 chr5 122684870 122685047 -29852212 - B3A SINE B2 -12 186 1 5 1521 267 324 46 0 chr5 122686325 122686433 -29850826 - L1MB5 LINE L1 -2 6172 6060 5 1521 340 290 97 101 chr5 122686687 122686894 -29850365 + B4 SINE B4 3 208 -84 5 1521 765 188 0 32 chr5 122686896 122687050 -29850209 + B1_Mur1 SINE Alu 1 149 0 5 1521 521 241 25 158 chr5 122687050 122687135 -29850124 + B4 SINE B4 86 292 0 5 1521 1437 78 5 5 chr5 122687842 122688035 -29849224 - B2_Mm1a SINE B2 0 193 1 5 1521 1053 37 7 0 chr5 122688058 122688194 -29849065 - B1_Mus2 SINE Alu 0 147 11 5 1521 330 188 31 0 chr5 122688194 122688258 -29849001 - PB1D10 SINE Alu -29 88 23 5 1521 434 293 24 8 chr5 122690029 122690153 -29847106 + RSINE1 SINE B4 31 156 -9 5 1521 305 240 118 0 chr5 122692079 122692183 -29845076 + PB1D10 SINE Alu 10 128 -21 5 1521 811 176 28 21 chr5 122692390 122692535 -29844724 + B1_Mur4 SINE Alu 1 146 -4 5 1521 800 187 141 6 chr5 122693175 122693352 -29843907 + B3 SINE B2 2 202 -14 5 1521 824 136 83 0 chr5 122693478 122693610 -29843649 + B1_Mus1 SINE Alu 5 147 -1 5 1521 2551 152 118 15 chr5 122694811 122695286 -29841973 + RLTR28 LTR ERVL 1 524 0 5 1521 293 100 0 20 chr5 122695388 122695439 -29841820 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 5 1521 344 269 0 0 chr5 122696178 122696256 -29841003 + PB1D10 SINE Alu 28 105 -12 5 1521 291 254 79 71 chr5 122696812 122696952 -29840307 + B1F1 SINE Alu 1 141 -8 5 1521 234 308 39 0 chr5 122696967 122697045 -29840214 + ID4_ SINE ID 2 82 -1 5 1521 278 247 134 5 chr5 122697106 122697190 -29840069 + PB1D10 SINE Alu 2 94 -33 5 1521 403 170 137 20 chr5 122697228 122697330 -29839929 + B1F2 SINE Alu 36 149 0 5 1521 1175 247 10 50 chr5 122698324 122698626 -29838633 - B4A SINE B4 0 292 3 5 1521 486 0 0 0 chr5 122699166 122699220 -29838039 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1521 1275 41 0 0 chr5 122699839 122699986 -29837273 + B1_Mm SINE Alu 1 147 0 5 1521 261 0 0 0 chr5 122699986 122700015 -29837244 + (A)n Simple_repeat Simple_repeat 1 29 0 5 1521 798 190 0 7 chr5 122700118 122700261 -29836998 - B1_Mur1 SINE Alu -5 144 3 5 1521 231 88 0 0 chr5 122700406 122700440 -29836819 + (CAGA)n Simple_repeat Simple_repeat 2 35 0 5 1521 1437 89 16 0 chr5 122701835 122702026 -29835233 + B2_Mm2 SINE B2 2 195 0 5 1521 228 262 220 15 chr5 122702450 122702582 -29834677 - L1M5 LINE L1 -526 5598 5440 5 1521 424 197 36 31 chr5 122702591 122702706 -29834553 - PB1D7 SINE Alu -2 118 1 5 1521 1090 29 73 7 chr5 122703191 122703328 -29833931 + B1_Mm SINE Alu 2 147 0 5 1521 207 161 0 0 chr5 122703328 122703384 -29833875 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 5 1521 231 36 0 0 chr5 122703592 122703620 -29833639 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1521 613 215 33 40 chr5 122703725 122703875 -29833384 + B1_Mur1 SINE Alu 1 149 0 5 1521 620 230 16 0 chr5 122704097 122704223 -29833036 - RSINE1 SINE B4 -36 129 2 5 1521 611 195 42 0 chr5 122704973 122705081 -29832178 + B1_Mur1 SINE Alu 19 131 -18 5 1521 1067 163 57 26 chr5 122705081 122705308 -29831951 + RMER15 LTR ERVL 1 234 -341 5 1521 988 143 6 28 chr5 122705323 122705503 -29831756 + URR1B DNA MER1_type 50 225 0 5 1521 401 192 59 29 chr5 122705523 122705625 -29831634 - PB1 SINE Alu 0 127 23 5 1521 424 209 94 134 chr5 122705637 122705786 -29831473 + B1_Mur1 SINE Alu 6 148 -1 5 1521 189 147 0 0 chr5 122705802 122705836 -29831423 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1521 261 229 81 35 chr5 122705924 122706010 -29831249 - B4A SINE B4 -2 290 201 5 1521 321 26 0 0 chr5 122706556 122706594 -29830665 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1521 602 353 25 14 chr5 122706645 122706921 -29830338 - B4A SINE B4 -4 288 10 5 1521 225 245 107 48 chr5 122706938 122707041 -29830218 - PB1D10 SINE Alu -8 109 1 5 1521 443 283 94 8 chr5 122709163 122709291 -29827968 + B1_Mur1 SINE Alu 9 147 -2 5 1521 695 250 28 94 chr5 122709372 122709565 -29827694 + B3A SINE B2 1 182 -16 5 1521 249 83 0 0 chr5 122709565 122709601 -29827658 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1521 695 250 28 94 chr5 122709601 122709619 -29827640 + B3A SINE B2 183 198 0 5 1521 324 0 0 0 chr5 122709653 122709689 -29827570 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1521 548 219 123 0 chr5 122709703 122709817 -29827442 - RSINE1 SINE B4 -30 135 8 5 1521 855 167 7 0 chr5 122710009 122710147 -29827112 + B1_Mm SINE Alu 6 144 -3 5 1521 392 378 13 59 chr5 122710745 122711049 -29826210 + B4A SINE B4 1 290 -2 5 1521 215 215 0 15 chr5 122711057 122711123 -29826136 + (CATA)n Simple_repeat Simple_repeat 1 65 0 5 1521 769 250 32 50 chr5 122712171 122712390 -29824869 + B3 SINE B2 2 216 0 5 1521 633 154 118 37 chr5 122712601 122712736 -29824523 - B1_Mus1 SINE Alu -2 146 1 5 1521 1341 72 55 6 chr5 122712739 122712920 -29824339 - B2_Mm2 SINE B2 -5 190 1 5 1521 353 229 63 18 chr5 122713109 122713220 -29824039 + PB1D10 SINE Alu 1 116 -1 5 1521 495 243 100 111 chr5 122713266 122713456 -29823803 + B3A SINE B2 3 190 -8 5 1521 209 206 13 52 chr5 122714526 122714603 -29822656 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 5 1521 23 0 0 0 chr5 122714686 122714709 -29822550 + AT_rich Low_complexity Low_complexity 1 23 0 5 1521 255 284 167 0 chr5 122714963 122715065 -29822194 - PB1D9 SINE Alu 0 120 2 5 1521 432 0 0 0 chr5 122715113 122715161 -29822098 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1521 616 165 0 0 chr5 122715190 122715294 -29821965 - B1_Mus1 SINE Alu -9 140 35 5 1521 870 146 83 55 chr5 122715294 122715308 -29821951 - B2_Mm2 SINE B2 -8 187 165 5 1521 192 40 0 0 chr5 122715308 122715333 -29821926 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5 1521 870 146 83 55 chr5 122715333 122715499 -29821760 - B2_Mm2 SINE B2 -31 164 3 5 1521 516 210 15 46 chr5 122715499 122715524 -29821735 - B1F2 SINE Alu -115 34 15 5 1521 180 0 0 0 chr5 122715672 122715692 -29821567 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 5 1521 609 279 32 27 chr5 122715717 122715905 -29821354 + B3A SINE B2 1 189 -9 5 1521 368 295 83 54 chr5 122716013 122716055 -29821204 - L1M5 LINE L1 -416 5763 5726 5 1521 1293 110 11 0 chr5 122716055 122716237 -29821022 - B2_Mm1a SINE B2 -9 184 1 5 1521 368 295 83 54 chr5 122716237 122716434 -29820825 - L1M5 LINE L1 -454 5725 5517 5 1521 279 0 0 0 chr5 122716540 122716571 -29820688 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1521 675 296 15 25 chr5 122716573 122716777 -29820482 - ID_B1 SINE B4 -13 211 10 5 1521 272 233 96 0 chr5 122717022 122717095 -29820164 + PB1D10 SINE Alu 33 112 -5 5 1521 355 294 26 44 chr5 122717115 122717229 -29820030 + ID_B1 SINE B4 105 216 -8 5 1521 1220 61 0 0 chr5 122717483 122717631 -29819628 + B1_Mus1 SINE Alu 1 148 0 5 1521 769 283 0 48 chr5 122717674 122717882 -29819377 + B3A SINE B2 1 198 0 6 1521 306 111 0 0 chr5 122717900 122717945 -29819314 + B1_Mus1 SINE Alu 1 45 -103 6 1521 312 136 0 57 chr5 122717936 122718006 -29819253 + ORR1B1 LTR MaLR 49 114 -280 6 1521 234 0 0 0 chr5 122718275 122718301 -29818958 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1521 577 261 0 15 chr5 122718307 122718443 -29818816 + RSINE1 SINE B4 4 137 -28 6 1521 1076 112 0 7 chr5 122718504 122718642 -29818617 + B1_Mus2 SINE Alu 1 138 -9 6 1521 234 0 0 0 chr5 122718642 122718668 -29818591 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1521 739 216 0 33 chr5 122718881 122719034 -29818225 - B1_Mur2 SINE Alu 0 149 2 6 1521 704 123 107 8 chr5 122719578 122719709 -29817550 - RMER15 LTR ERVL -48 527 384 6 1521 534 198 0 0 chr5 122719840 122719936 -29817323 - B1F SINE Alu -53 96 1 6 1521 283 352 31 39 chr5 122719936 122719981 -29817278 - B4A SINE B4 -211 81 38 6 1521 661 215 75 85 chr5 122720026 122720214 -29817045 - B4 SINE B4 -63 229 44 6 1521 358 256 172 17 chr5 122720412 122720575 -29816684 - B3A SINE B2 -6 189 7 6 1521 676 151 16 16 chr5 122720632 122720753 -29816506 + B1F SINE Alu 29 149 0 6 1521 873 230 32 41 chr5 122720775 122720993 -29816266 + B3 SINE B2 1 216 0 6 1521 1101 162 32 0 chr5 122721008 122721193 -29816066 - B2_Mm2 SINE B2 -4 191 1 6 1521 304 273 0 29 chr5 122721327 122721395 -29815864 - ID4 SINE ID -16 67 2 6 1521 394 261 23 179 chr5 122721424 122721515 -29815744 + RSINE1 SINE B4 3 81 -84 6 1521 877 83 114 0 chr5 122721515 122721647 -29815612 + B1_Mus1 SINE Alu 1 147 -1 6 1521 394 261 23 179 chr5 122721647 122721728 -29815531 + RSINE1 SINE B4 82 148 -17 6 1521 487 306 14 0 chr5 122721837 122721981 -29815278 + B1_Mur1 SINE Alu 2 147 -2 6 1521 316 263 115 10 chr5 122721985 122722081 -29815178 + RSINE1 SINE B4 3 108 -57 6 1521 243 0 0 0 chr5 122722154 122722181 -29815078 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1521 1117 72 0 0 chr5 122722181 122722319 -29814940 - B1_Mus2 SINE Alu -9 138 1 6 1521 315 279 42 114 chr5 122722347 122722513 -29814746 + RSINE1 SINE B4 11 164 -1 6 1521 22 0 0 0 chr5 122722716 122722738 -29814521 + AT_rich Low_complexity Low_complexity 1 22 0 6 1521 634 37 0 0 chr5 122722741 122722822 -29814437 - B1_Mus2 SINE Alu 0 147 67 6 1521 411 262 220 45 chr5 122722829 122722961 -29814298 - RSINE1 SINE B4 0 165 11 6 1521 353 224 13 26 chr5 122722967 122723045 -29814214 - PB1D10 SINE Alu -40 77 1 6 1521 207 0 0 0 chr5 122723353 122723376 -29813883 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6 1521 772 178 8 8 chr5 122723564 122723694 -29813565 - B1_Mus2 SINE Alu -8 139 10 6 1521 389 256 36 94 chr5 122723602 122723740 -29813519 - MT2B LTR ERVL -345 256 127 6 1521 261 240 65 26 chr5 122723765 122723842 -29813417 + ID4 SINE ID 2 81 -2 6 1521 390 247 65 0 chr5 122723873 122723966 -29813293 + RSINE1 SINE B4 3 101 -64 6 1521 1583 53 0 0 chr5 122724257 122724445 -29812814 - B2_Mm1a SINE B2 -5 188 1 6 1521 369 361 64 23 chr5 122725167 122725385 -29811874 - MLT1K LTR MaLR -218 377 151 6 1521 659 282 159 44 chr5 122725458 122725710 -29811549 - B4A SINE B4 -11 281 1 6 1521 30 0 0 24 chr5 122726026 122726051 -29811208 + AT_rich Low_complexity Low_complexity 1 25 0 6 1521 594 208 114 8 chr5 122726051 122726182 -29811077 - B1_Mur3 SINE Alu 0 149 5 6 1521 30 0 0 24 chr5 122726182 122726197 -29811062 + AT_rich Low_complexity Low_complexity 1 15 0 6 1521 709 202 32 0 chr5 122726210 122726334 -29810925 - B1_Mur2 SINE Alu -13 136 9 6 1521 312 262 24 132 chr5 122726334 122726376 -29810883 - MT2B LTR ERVL -318 282 135 6 1521 366 182 320 120 chr5 122726455 122726693 -29810566 + RLTR20A2 LTR ERVK 1 287 -281 6 1521 386 261 83 21 chr5 122726668 122726738 -29810521 + RLTR20A2 LTR ERVK 411 480 -98 6 1521 498 17 0 0 chr5 122726738 122726797 -29810462 + (TG)n Simple_repeat Simple_repeat 2 60 0 6 1521 386 261 83 21 chr5 122726797 122726871 -29810388 + RLTR20A2 LTR ERVK 481 564 -14 6 1521 182 170 0 54 chr5 122726871 122726927 -29810332 + G-rich Low_complexity Low_complexity 3 55 0 6 1521 2495 153 145 17 chr5 122727189 122727707 -29809552 - RMER4B LTR ERVK 0 585 2 6 1521 422 243 19 9 chr5 122727742 122727850 -29809409 + PB1D10 SINE Alu 1 109 -8 6 1521 629 164 9 42 chr5 122727911 122728062 -29809197 - MTE2b LTR MaLR -32 347 198 6 1521 455 236 17 119 chr5 122728138 122728323 -29808936 - MTE2b LTR MaLR -97 282 102 6 1521 278 329 61 26 chr5 122728468 122728696 -29808563 - L1MB7 LINE L1 -19 6165 5930 6 1521 225 0 0 0 chr5 122728729 122728754 -29808505 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 6 1521 412 186 105 0 chr5 122728756 122728842 -29808417 - PB1D9 SINE Alu -12 108 14 6 1521 1203 68 0 0 chr5 122728889 122729036 -29808223 + B1_Mus2 SINE Alu 1 147 0 6 1521 499 321 12 0 chr5 122729071 122729233 -29808026 - RSINE1 SINE B4 -1 164 1 6 1521 841 156 18 4 chr5 122729277 122729506 -29807753 + (TATG)n Simple_repeat Simple_repeat 1 232 0 6 1521 303 136 0 22 chr5 122729506 122729551 -29807708 - HAL1-3A_ME LINE L1 -846 2012 1969 6 1521 800 292 37 0 chr5 122729688 122729904 -29807355 - ID_B1 SINE B4 0 224 1 6 1521 21 0 0 0 chr5 122730045 122730066 -29807193 + AT_rich Low_complexity Low_complexity 1 21 0 6 1521 610 304 39 5 chr5 122730120 122730328 -29806931 + MER20 DNA MER1_type 4 218 -1 6 1521 180 186 21 85 chr5 122730988 122731035 -29806224 + L4 LINE RTE 970 1013 -1016 6 1521 369 0 0 0 chr5 122731286 122731327 -29805932 + (CA)n Simple_repeat Simple_repeat 2 42 0 6 1521 375 330 0 34 chr5 122731703 122731822 -29805437 + RSINE1 SINE B4 11 125 -40 6 1521 471 87 0 0 chr5 122731886 122731955 -29805304 + (CA)n Simple_repeat Simple_repeat 2 70 0 6 1521 443 325 6 67 chr5 122732447 122732612 -29804647 + ID_B1 SINE B4 68 222 -2 6 1521 1100 187 58 10 chr5 122732617 122732822 -29804437 + B3 SINE B2 1 215 -1 6 1521 790 52 0 0 chr5 122732822 122732919 -29804340 - B1_Mus1 SINE Alu -51 97 1 6 1521 1507 53 11 0 chr5 122732948 122733138 -29804121 + B2_Mm1t SINE B2 2 193 0 6 1521 766 76 25 0 chr5 122733304 122733422 -29803837 + (TTTC)n Simple_repeat Simple_repeat 3 123 0 6 1521 679 220 30 8 chr5 122733422 122733555 -29803704 - B1_Mur1 SINE Alu -12 137 2 6 1521 237 318 6 63 chr5 122733883 122733898 -29803361 - YREP_Mm Unknown Unknown -1484 328 182 6 1521 567 257 21 35 chr5 122733898 122734039 -29803220 + ID_B1 SINE B4 81 219 -5 6 1521 208 316 14 22 chr5 122734305 122734444 -29802815 + G-rich Low_complexity Low_complexity 2 139 0 6 1521 31 44 0 0 chr5 122734632 122734677 -29802582 + GC_rich Low_complexity Low_complexity 1 45 0 6 1521 249 108 0 0 chr5 122734755 122734792 -29802467 + (CGG)n Simple_repeat Simple_repeat 2 38 0 6 1521 325 206 0 0 chr5 122735051 122735119 -29802140 - MIR SINE MIR -55 153 86 6 1521 515 16 16 0 chr5 122735656 122735720 -29801539 + (GA)n Simple_repeat Simple_repeat 1 65 0 6 1521 1247 48 7 0 chr5 122736721 122736867 -29800392 - B1_Mus1 SINE Alu -1 147 1 6 1521 600 189 63 0 chr5 122736867 122736994 -29800265 + Tigger7 DNA MER2_type 2357 2491 0 6 1521 288 0 0 0 chr5 122737530 122737562 -29799697 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1521 264 201 0 0 chr5 122737858 122737912 -29799347 + PB1D10 SINE Alu 54 107 -13 6 1521 33 0 0 0 chr5 122738012 122738045 -29799214 + AT_rich Low_complexity Low_complexity 1 33 0 6 1521 761 127 110 0 chr5 122738053 122738171 -29799088 + B1_Mus1 SINE Alu 4 134 -14 6 1521 222 37 0 0 chr5 122738176 122738203 -29799056 + (TATG)n Simple_repeat Simple_repeat 1 27 0 6 1521 554 41 14 0 chr5 122739036 122739109 -29798150 + (TGG)n Simple_repeat Simple_repeat 1 74 0 6 1521 796 266 29 14 chr5 122739109 122739311 -29797948 - B3 SINE B2 -9 207 3 6 1521 868 177 13 20 chr5 122739314 122739464 -29797795 - B1_Mur1 SINE Alu 0 149 1 6 1521 638 224 1 2 chr5 122739720 122739841 -29797418 + RSINE1 SINE B4 4 125 -40 6 1521 306 50 0 0 chr5 122739874 122739914 -29797345 + (CATA)n Simple_repeat Simple_repeat 2 41 0 6 1521 543 284 62 6 chr5 122740052 122740295 -29796964 - L1MB5 LINE L1 -1981 6014 5757 6 1521 344 243 36 6 chr5 122740349 122740494 -29796765 - L1MB8 LINE L1 -338 5836 5685 6 1521 389 331 35 21 chr5 122740494 122740636 -29796623 - B1F1 SINE Alu -4 145 2 6 1521 301 277 0 35 chr5 122740639 122740725 -29796534 - L1MB5 LINE L1 -506 5673 5591 6 1521 1122 95 7 0 chr5 122740746 122740893 -29796366 + B1_Mus1 SINE Alu 1 148 0 6 1521 205 216 0 0 chr5 122740893 122740930 -29796329 + A-rich Low_complexity Low_complexity 1 37 0 6 1521 823 197 0 0 chr5 122741045 122741182 -29796077 + B1_Mur2 SINE Alu 12 148 -1 6 1521 867 215 102 10 chr5 122744947 122745144 -29792115 - B3 SINE B2 0 216 2 6 1521 583 242 8 69 chr5 122745257 122745425 -29791834 - ID_B1 SINE B4 -57 235 81 6 1521 258 294 118 0 chr5 122746051 122746136 -29791123 - PB1D10 SINE Alu -13 104 10 6 1521 195 239 93 93 chr5 122746250 122746347 -29790912 + L2c LINE L2 3285 3381 -6 6 1521 614 259 18 12 chr5 122746477 122746641 -29790618 + RSINE1 SINE B4 1 165 0 6 1521 1736 119 52 87 chr5 122746703 122747070 -29790189 - MTC LTR MaLR 0 421 68 6 1521 817 100 0 0 chr5 122747090 122747200 -29790059 - B1_Mus2 SINE Alu 0 147 38 6 1521 1122 135 10 40 chr5 122747239 122747440 -29789819 - B2_Mm2 SINE B2 0 195 1 6 1521 788 204 37 31 chr5 122747498 122747707 -29789552 + B3A SINE B2 11 213 -3 7 1521 747 199 114 50 chr5 122747851 122748052 -29789207 - B3 SINE B2 -1 215 2 7 1521 223 292 31 0 chr5 122748206 122748271 -29788988 + PB1 SINE Alu 22 88 -39 7 1521 707 236 6 75 chr5 122748763 122748923 -29788336 - B1_Mur2 SINE Alu 0 149 1 7 1521 243 0 0 0 chr5 122748947 122748974 -29788285 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1521 281 296 49 0 chr5 122749002 122749083 -29788176 - B3A SINE B2 -26 172 88 7 1521 282 233 40 27 chr5 122749111 122749186 -29788073 + B4A SINE B4 207 282 -10 7 1521 405 0 0 0 chr5 122749186 122749231 -29788028 + (TC)n Simple_repeat Simple_repeat 1 45 0 7 1521 213 39 0 0 chr5 122749231 122749256 -29788003 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1521 1751 16 0 0 chr5 122749284 122749477 -29787782 - B2_Mm1a SINE B2 0 193 1 7 1521 302 0 26 0 chr5 122749569 122749607 -29787652 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1521 24 0 0 0 chr5 122750637 122750661 -29786598 + AT_rich Low_complexity Low_complexity 1 24 0 7 1521 624 261 0 14 chr5 122750749 122750889 -29786370 + B3A SINE B2 1 138 -60 7 1521 468 0 0 0 chr5 122750913 122750965 -29786294 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1521 1215 29 0 0 chr5 122751098 122751237 -29786022 - B1_Mm SINE Alu -8 139 1 7 1521 1567 28 0 6 chr5 122751432 122751613 -29785646 + B2_Mm2 SINE B2 1 180 -15 7 1521 406 248 27 45 chr5 122751828 122751938 -29785321 + PB1D7 SINE Alu 12 119 -1 7 1521 383 267 63 56 chr5 122753100 122753243 -29784016 + RSINE1 SINE B4 3 146 -19 7 1521 22 35 0 0 chr5 122753302 122753331 -29783928 + AT_rich Low_complexity Low_complexity 1 29 0 7 1521 356 121 15 0 chr5 122755079 122755128 -29782131 + (TTTC)n Simple_repeat Simple_repeat 1 49 0 7 1521 1023 97 14 7 chr5 122755128 122755273 -29781986 - B1_Mus1 SINE Alu 0 148 3 7 1521 356 121 15 0 chr5 122755273 122755289 -29781970 + (TTTC)n Simple_repeat Simple_repeat 4 20 0 7 1521 186 43 0 0 chr5 122755363 122755386 -29781873 + (GA)n Simple_repeat Simple_repeat 1 23 0 7 1521 213 261 111 42 chr5 122755399 122755471 -29781788 - B1_Mus1 SINE Alu -67 81 5 7 1521 21 0 0 0 chr5 122755547 122755568 -29781691 + AT_rich Low_complexity Low_complexity 1 21 0 7 1521 490 271 27 50 chr5 122755568 122755768 -29781491 + B4A SINE B4 1 230 -62 7 1521 351 221 99 78 chr5 122755768 122755910 -29781349 + RSINE1 SINE B4 3 147 -18 7 1521 1354 148 32 5 chr5 122756106 122756324 -29780935 - URR1B DNA MER1_type 0 225 2 7 1521 1069 89 7 20 chr5 122756383 122756532 -29780727 - B1_Mus1 SINE Alu -1 147 1 7 1521 778 162 0 0 chr5 122756879 122756996 -29780263 + B1_Mus1 SINE Alu 3 119 -29 7 1521 709 210 222 23 chr5 122757553 122757724 -29779535 + B3 SINE B2 1 205 -11 7 1521 775 169 0 24 chr5 122757741 122757868 -29779391 - B1_Mur2 SINE Alu -16 133 10 7 1521 354 309 103 0 chr5 122757763 122757889 -29779370 - B4A SINE B4 -88 204 66 7 1521 221 250 0 0 chr5 122758054 122758102 -29779157 - ID4 SINE ID -33 50 3 7 1521 539 174 28 47 chr5 122758345 122758474 -29778785 - B1_Mus2 SINE Alu -15 134 3 7 1521 344 194 68 120 chr5 122758371 122758488 -29778771 - MT2B LTR ERVL -344 257 147 7 1521 463 245 99 14 chr5 122758675 122758816 -29778443 - RSINE1 SINE B4 -11 154 2 7 1521 317 300 22 30 chr5 122758858 122758992 -29778267 - RSINE1 SINE B4 -4 161 29 7 1521 218 229 79 79 chr5 122759022 122759098 -29778161 + MIRc SINE MIR 39 114 -154 7 1521 924 74 20 20 chr5 122759211 122759362 -29777897 + (TTTTC)n Simple_repeat Simple_repeat 5 155 0 7 1521 396 0 0 0 chr5 122759362 122759406 -29777853 + (TC)n Simple_repeat Simple_repeat 2 45 0 7 1521 604 247 47 34 chr5 122759694 122759872 -29777387 - B3 SINE B2 -5 193 4 7 1521 1984 81 82 67 chr5 122759917 122760222 -29777037 + L1Md_F2 LINE L1 6248 6560 -22 7 1521 921 77 222 37 chr5 122760222 122760384 -29776875 + B2_Mm2 SINE B2 2 193 -2 7 1521 1984 81 82 67 chr5 122760384 122760407 -29776852 + L1Md_F2 LINE L1 6561 6581 -1 7 1521 760 194 16 5 chr5 122760508 122760651 -29776608 + B1_Mur1 SINE Alu 11 149 0 7 1521 749 104 168 46 chr5 122760671 122760802 -29776457 + B1_Mus2 SINE Alu 1 147 0 7 1521 1397 99 16 0 chr5 122761506 122761697 -29775562 - B2_Mm2 SINE B2 0 195 2 7 1521 496 275 65 42 chr5 122762001 122762217 -29775042 - ID_B1 SINE B4 -1 223 3 7 1521 863 209 27 43 chr5 122762254 122762439 -29774820 - B3 SINE B2 -34 182 1 7 1521 187 319 115 21 chr5 122762533 122762629 -29774630 - MIR SINE MIR -47 215 111 7 1521 574 200 36 18 chr5 122764529 122764641 -29772618 + PB1D7 SINE Alu 1 114 -6 7 1521 289 221 244 0 chr5 122764800 122764886 -29772373 - RSINE1 SINE B4 -57 108 2 7 1521 604 230 0 0 chr5 122765929 122766042 -29771217 + PB1D10 SINE Alu 5 117 0 7 1521 1374 70 37 0 chr5 122766066 122766253 -29771006 + B2_Mm2 SINE B2 1 194 -1 7 1521 350 280 67 22 chr5 122766861 122766996 -29770263 - RSINE1 SINE B4 -22 143 3 7 1521 212 335 87 35 chr5 122767670 122767843 -29769416 + MIRb SINE MIR 48 229 -39 7 1521 661 244 90 13 chr5 122768074 122768259 -29769000 - B3 SINE B2 0 195 4 7 1521 2885 199 102 69 chr5 122768766 122769634 -29767625 - RLTR13D6 LTR ERVK 0 1033 1 7 1521 278 291 25 0 chr5 122770599 122770678 -29766581 - ID_B1 SINE B4 -9 215 135 7 1521 264 59 0 0 chr5 122773925 122773959 -29763300 + (A)n Simple_repeat Simple_repeat 1 34 0 7 1521 253 212 30 15 chr5 122774570 122774637 -29762622 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 7 1521 443 258 152 12 chr5 122777858 122778023 -29759236 + B3A SINE B2 3 190 -8 7 1521 654 130 77 17 chr5 122778025 122778142 -29759117 + B1_Mur2 SINE Alu 24 147 -2 7 1521 895 212 81 0 chr5 122778144 122778342 -29758917 + B3 SINE B2 1 214 -2 7 1521 537 215 19 0 chr5 122778604 122778711 -29758548 - B1F2 SINE Alu -8 141 33 7 1521 798 246 72 48 chr5 122778910 122779119 -29758140 + B4A SINE B4 28 241 -51 7 1521 1245 89 17 0 chr5 122779103 122779282 -29757977 + B2_Mm2 SINE B2 14 195 0 7 1521 439 256 101 79 chr5 122779417 122779595 -29757664 - B3A SINE B2 -16 182 1 7 1521 1246 41 0 7 chr5 122779618 122779766 -29757493 - B1_Mm SINE Alu 0 147 1 7 1521 523 280 23 8 chr5 122779908 122780041 -29757218 + RSINE1 SINE B4 25 159 -6 7 1521 272 305 137 8 chr5 122780047 122780295 -29756964 + L1MA4A LINE L1 5000 5279 -864 7 1521 386 94 0 15 chr5 122780319 122780384 -29756875 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1521 287 248 49 81 chr5 122780390 122780513 -29756746 + L1MA4A LINE L1 5475 5593 -707 7 1521 448 296 68 0 chr5 122780528 122780660 -29756599 + ID_B1 SINE B4 84 224 0 7 1521 438 224 127 59 chr5 122780729 122780934 -29756325 + L1MA4A LINE L1 5599 5809 -494 7 1521 554 183 366 0 chr5 122780934 122781087 -29756172 + B3 SINE B2 1 209 -7 7 1521 411 221 93 156 chr5 122781087 122781194 -29756065 + L1MA4A LINE L1 5810 5886 -417 7 1521 206 237 12 50 chr5 122781268 122781348 -29755911 + GA-rich Low_complexity Low_complexity 2 78 0 7 1521 1210 62 0 0 chr5 122781876 122782022 -29755237 + B1_Mus2 SINE Alu 2 147 0 7 1521 243 133 0 0 chr5 122782022 122782067 -29755192 + (A)n Simple_repeat Simple_repeat 1 45 0 7 1521 410 206 45 123 chr5 122782078 122782131 -29755128 + B4A SINE B4 52 90 -202 7 1521 1269 184 165 6 chr5 122782131 122782453 -29754806 + ORR1D1 LTR MaLR 1 373 -1 7 1521 410 206 45 123 chr5 122782453 122782554 -29754705 + B4A SINE B4 91 194 -98 7 1521 1004 17 0 0 chr5 122782459 122782578 -29754681 + B1_Mus2 SINE Alu 9 127 -20 7 1521 339 222 42 0 chr5 122782620 122782692 -29754567 + RSINE1 SINE B4 3 77 -88 7 1521 606 262 12 42 chr5 122782696 122782863 -29754396 - RSINE1 SINE B4 0 165 4 7 1521 238 400 100 0 chr5 122783027 122783167 -29754092 + B4 SINE B4 24 177 -115 7 1521 954 152 0 0 chr5 122783790 122783935 -29753324 - B1_Mus1 SINE Alu -1 147 3 7 1521 534 271 57 0 chr5 122783949 122784089 -29753170 - B1F1 SINE Alu 0 149 2 7 1521 1685 36 0 0 chr5 122784564 122784757 -29752502 + B2_Mm1a SINE B2 1 193 0 7 1521 267 337 71 66 chr5 122784936 122785133 -29752126 + MLT1H2 LTR MaLR 285 482 -7 7 1521 488 54 41 52 chr5 122785173 122785270 -29751989 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 7 1521 714 219 16 8 chr5 122785273 122785410 -29751849 - ID_B1 SINE B4 -69 223 87 7 1521 24 0 0 0 chr5 122785499 122785523 -29751736 + AT_rich Low_complexity Low_complexity 1 24 0 7 1521 27 0 0 0 chr5 122785530 122785557 -29751702 + AT_rich Low_complexity Low_complexity 1 27 0 7 1521 923 150 0 33 chr5 122785557 122785709 -29751550 + B1_Mur3 SINE Alu 1 147 -2 7 1521 216 97 0 0 chr5 122785709 122785740 -29751519 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 7 1521 215 207 190 0 chr5 122785783 122785841 -29751418 + PB1 SINE Alu 57 125 -2 7 1521 490 241 16 57 chr5 122785859 122785982 -29751277 + B1F SINE Alu 1 118 -31 7 1521 309 200 12 48 chr5 122785997 122786081 -29751178 + ID4_ SINE ID 1 81 -2 7 1521 848 48 186 0 chr5 122786373 122786497 -29750762 - B1_Mm SINE Alu 0 147 1 7 1521 1073 282 133 2 chr5 122786557 122787089 -29750170 + L1MB8 LINE L1 5390 5991 -187 7 1521 243 0 0 0 chr5 122787522 122787549 -29749710 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1521 753 229 125 81 chr5 122787553 122787862 -29749397 - Lx9 LINE L1 -1740 5904 5544 7 1521 1049 131 0 0 chr5 122787862 122788007 -29749252 - B1_Mus1 SINE Alu -3 145 1 8 1521 753 222 120 86 chr5 122788007 122788143 -29749116 - Lx9 LINE L1 -304 5543 5406 7 1521 748 167 20 14 chr5 122788223 122788369 -29748890 + B1_Mur1 SINE Alu 2 148 -1 8 1521 303 28 0 0 chr5 122788456 122788492 -29748767 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1521 812 66 0 0 chr5 122788492 122788598 -29748661 - B1_Mus2 SINE Alu 0 147 42 8 1521 226 304 103 64 chr5 122789300 122789373 -29747886 + ID_B1 SINE B4 11 148 -76 8 1521 352 269 32 11 chr5 122789373 122789467 -29747792 + PB1D10 SINE Alu 1 96 -21 8 1521 226 304 103 64 chr5 122789467 122789504 -29747755 + ID_B1 SINE B4 149 222 -2 8 1521 216 0 0 0 chr5 122789697 122789721 -29747538 + (CATCC)n Simple_repeat Simple_repeat 4 27 0 8 1521 902 221 219 18 chr5 122790205 122790517 -29746742 + ORR1D1 LTR MaLR 1 400 0 8 1521 566 196 43 43 chr5 122790628 122790767 -29746492 - B1_Mur2 SINE Alu -9 140 2 8 1521 262 220 34 0 chr5 122790771 122790830 -29746429 + ORR1D2 LTR MaLR 307 367 -3 8 1521 493 224 33 33 chr5 122790952 122791072 -29746187 - PB1D7 SINE Alu 0 120 1 8 1521 957 207 25 5 chr5 122791235 122791434 -29745825 + B3 SINE B2 4 206 -10 8 1521 24 0 0 0 chr5 122791442 122791466 -29745793 + AT_rich Low_complexity Low_complexity 1 24 0 8 1521 334 261 11 0 chr5 122791685 122791773 -29745486 - PB1D10 SINE Alu -8 109 21 8 1521 234 301 119 38 chr5 122791699 122791858 -29745401 - ID_B1 SINE B4 -48 176 5 8 1521 251 261 56 28 chr5 122791928 122791999 -29745260 + PB1D10 SINE Alu 2 74 -43 8 1521 230 276 63 38 chr5 122791929 122792008 -29745251 + ID_B1 SINE B4 84 164 -60 8 1521 2807 52 91 3 chr5 122792173 122792537 -29744722 + MTA_Mm LTR MaLR 1 396 0 8 1521 353 331 81 0 chr5 122792636 122792796 -29744463 + MLT1F2 LTR MaLR 26 198 -362 8 1521 364 298 171 9 chr5 122792859 122793069 -29744190 + MLT1F2 LTR MaLR 316 559 -1 8 1521 628 255 0 77 chr5 122793267 122793437 -29743822 + RSINE1 SINE B4 3 159 -6 8 1521 571 264 192 0 chr5 122794525 122794692 -29742567 - ID_B1 SINE B4 -19 205 7 8 1521 491 217 95 9 chr5 122794929 122795045 -29742214 - B3 SINE B2 -6 210 85 8 1521 210 216 137 0 chr5 122795060 122795111 -29742148 + RSINE1 SINE B4 11 68 -97 8 1521 796 164 28 28 chr5 122795181 122795325 -29741934 + B1_Mur1 SINE Alu 2 145 -4 8 1521 302 300 113 23 chr5 122795369 122795502 -29741757 - B1F2 SINE Alu 0 149 5 8 1521 270 304 216 73 chr5 122795549 122795884 -29741375 - MLT1F1 LTR MaLR -8 561 140 8 1521 646 260 70 20 chr5 122795884 122796084 -29741175 + B3 SINE B2 1 210 -6 8 1521 253 303 223 73 chr5 122796084 122796154 -29741105 - MLT1F1 LTR MaLR -410 139 79 8 1521 441 0 0 0 chr5 122796154 122796203 -29741056 + (TA)n Simple_repeat Simple_repeat 2 50 0 8 1521 359 38 0 37 chr5 122797016 122797070 -29740189 + (TATG)n Simple_repeat Simple_repeat 3 54 0 8 1521 440 256 129 23 chr5 122797076 122797208 -29740051 - B3 SINE B2 -68 148 3 8 1521 679 284 26 0 chr5 122797239 122797394 -29739865 - RSINE1 SINE B4 -4 161 3 8 1521 199 275 163 11 chr5 122797513 122797605 -29739654 - L2 LINE L2 -494 2925 2820 8 1521 388 262 119 0 chr5 122797617 122797743 -29739516 - B1F1 SINE Alu 0 149 9 8 1521 795 146 49 42 chr5 122797771 122797914 -29739345 - B1_Mur2 SINE Alu 0 149 6 8 1521 330 280 47 128 chr5 122797774 122797946 -29739313 - B4 SINE B4 -69 223 66 8 1521 1341 76 5 31 chr5 122798010 122798201 -29739058 + B2_Mm1a SINE B2 1 186 -7 8 1521 572 221 12 16 chr5 122799269 122799513 -29737746 + GA-rich Low_complexity Low_complexity 1 242 0 8 1521 456 258 84 23 chr5 122799715 122799846 -29737413 - ID_B1 SINE B4 -3 221 83 8 1521 1000 80 72 7 chr5 122800463 122800601 -29736658 + B1_Mus1 SINE Alu 2 148 0 8 1521 290 340 10 21 chr5 122800612 122800708 -29736551 - PB1D10 SINE Alu -22 95 1 8 1521 877 255 51 75 chr5 122800759 122801052 -29736207 - B4 SINE B4 -2 290 5 8 1521 316 303 8 28 chr5 122802190 122802311 -29734948 - B1_Mur2 SINE Alu -1 119 1 8 1521 285 237 0 17 chr5 122802261 122802321 -29734938 - B4 SINE B4 -157 135 77 8 1521 755 159 16 0 chr5 122802375 122802504 -29734755 - B1_Mur4 SINE Alu -9 141 1 8 1521 223 263 95 57 chr5 122803625 122803730 -29733529 - MIR SINE MIR -46 216 108 8 1521 3208 40 0 0 chr5 122805180 122805560 -29731699 + L1Md_A LINE L1 6203 6582 0 8 1521 894 224 48 5 chr5 122805815 122806021 -29731238 - B3 SINE B2 0 216 2 8 1521 471 210 30 0 chr5 122806021 122806121 -29731138 - PB1D9 SINE Alu -11 109 7 8 1521 438 225 0 0 chr5 122806237 122806348 -29730911 + (TA)n Simple_repeat Simple_repeat 1 111 0 8 1521 1020 116 0 26 chr5 122807623 122807774 -29729485 - B1_Mus1 SINE Alu 0 148 2 8 1521 871 202 80 27 chr5 122807820 122808008 -29729251 - B3 SINE B2 0 216 19 8 1521 525 222 154 0 chr5 122808350 122808467 -29728792 - B1_Mur3 SINE Alu -14 135 1 8 1521 202 234 0 0 chr5 122808902 122808949 -29728310 + (TA)n Simple_repeat Simple_repeat 1 47 0 8 1521 528 223 23 76 chr5 122808963 122809094 -29728165 - B1F SINE Alu -21 128 5 8 1521 269 265 29 0 chr5 122809113 122809181 -29728078 + CT-rich Low_complexity Low_complexity 1 70 0 8 1521 663 203 22 7 chr5 122809182 122809321 -29727938 - B1_Mur1 SINE Alu -7 142 2 8 1521 567 192 0 0 chr5 122809321 122809420 -29727839 - B3 SINE B2 -117 99 1 8 1521 510 273 42 7 chr5 122809640 122809784 -29727475 - B1F2 SINE Alu 0 149 1 8 1521 278 237 17 17 chr5 122810342 122810402 -29726857 + ID4 SINE ID 19 78 -5 8 1521 476 259 129 0 chr5 122810841 122810980 -29726279 + RSINE1 SINE B4 3 159 -6 8 1521 778 126 73 7 chr5 122811146 122811282 -29725977 - B1_Mus1 SINE Alu 0 148 4 8 1521 21 0 0 0 chr5 122811318 122811339 -29725920 + AT_rich Low_complexity Low_complexity 1 21 0 8 1521 591 287 7 7 chr5 122811400 122811537 -29725722 + MIR SINE MIR 17 153 -109 8 1521 523 275 54 40 chr5 122811633 122811781 -29725478 - RSINE1 SINE B4 -12 153 4 8 1521 592 198 9 9 chr5 122812373 122812485 -29724774 + PB1D9 SINE Alu 6 117 -3 8 1521 998 83 34 14 chr5 122812547 122812694 -29724565 - B1_Mur4 SINE Alu 0 150 1 8 1521 461 110 19 149 chr5 122813341 122813448 -29723811 + PB1D9 SINE Alu 27 119 -1 8 1521 356 212 69 23 chr5 122813527 122813614 -29723645 + URR1B DNA MER1_type 2 92 -133 8 1521 731 135 31 8 chr5 122813619 122813746 -29723513 + B1_Mur4 SINE Alu 9 138 -12 8 1521 310 196 20 0 chr5 122813736 122813787 -29723472 - B1_Mur4 SINE Alu -98 52 1 8 1521 1556 53 16 0 chr5 122813800 122813989 -29723270 - B2_Mm2 SINE B2 -2 193 2 8 1521 615 237 90 15 chr5 122814041 122814174 -29723085 - B1_Mur2 SINE Alu -6 143 1 8 1521 327 265 0 143 chr5 122814071 122814190 -29723069 - MT2B LTR ERVL -347 254 153 8 190 690 177 224 22 chr5 122814397 122814576 -29722683 + B3 SINE B2 1 215 -1 8 1522 961 155 186 11 chr5 122814984 122815167 -29722092 - B3 SINE B2 -1 215 1 8 1522 436 229 28 9 chr5 122815176 122815282 -29721977 - PB1D9 SINE Alu -6 114 7 8 1522 450 210 48 39 chr5 122815946 122816050 -29721209 - B1_Mur1 SINE Alu -2 147 43 8 1522 411 21 0 0 chr5 122816260 122816308 -29720951 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1522 313 296 23 0 chr5 122816602 122816690 -29720569 - ID_B1 SINE B4 -3 221 132 8 1522 303 320 114 13 chr5 122816882 122817031 -29720228 - RSINE1 SINE B4 -1 164 1 8 1522 232 246 176 0 chr5 122817086 122817177 -29720082 + B1F SINE Alu 6 113 -7 8 1522 1666 213 109 46 chr5 122817772 122818249 -29719010 + RLTR18B LTR ERVK 2 508 -4 8 1522 1238 61 0 0 chr5 122818391 122818538 -29718721 + B1_Mus2 SINE Alu 1 147 0 8 1522 295 245 89 70 chr5 122818741 122818899 -29718360 - RSINE1 SINE B4 -2 163 3 8 1522 694 235 8 0 chr5 122819364 122819496 -29717763 + RSINE1 SINE B4 2 134 -31 8 1522 251 280 52 81 chr5 122819894 122820030 -29717229 + RSINE1 SINE B4 23 154 -11 8 1522 409 250 45 27 chr5 122820338 122820449 -29716810 - RSINE1 SINE B4 -46 119 7 8 1522 1186 61 0 0 chr5 122820650 122820797 -29716462 - B1_Mus2 SINE Alu 0 147 1 8 1522 259 299 12 38 chr5 122820963 122821043 -29716216 - ID SINE ID -144 80 3 8 1522 1154 35 20 20 chr5 122821303 122821451 -29715808 + B1_Mus1 SINE Alu 1 148 0 8 1522 28 86 0 0 chr5 122821465 122821535 -29715724 + AT_rich Low_complexity Low_complexity 1 70 0 8 1522 216 0 0 0 chr5 122821826 122821850 -29715409 + (C)n Simple_repeat Simple_repeat 1 24 0 8 1522 267 274 27 0 chr5 122822809 122822882 -29714377 + B3A SINE B2 3 77 -121 8 1522 222 347 137 0 chr5 122822935 122823059 -29714200 - MIR SINE MIR -79 183 43 8 1522 1150 61 0 20 chr5 122823215 122823366 -29713893 - B1_Mus1 SINE Alu 0 148 1 8 1522 1198 68 0 0 chr5 122824346 122824493 -29712766 + B1_Mus2 SINE Alu 1 147 0 8 1522 491 280 22 0 chr5 122824523 122824649 -29712610 + ID_B1 SINE B4 2 134 -158 8 1522 943 128 0 22 chr5 122824754 122824938 -29712321 + (CATA)n Simple_repeat Simple_repeat 1 180 0 8 1522 356 284 0 0 chr5 122825301 122825375 -29711884 - ID_B1 SINE B4 -8 216 143 8 1522 366 281 66 0 chr5 122825544 122825665 -29711594 - L1MD2 LINE L1 -18 6341 6213 8 1522 271 304 14 0 chr5 122825673 122825685 -29711574 - ID_B1 SINE B4 -57 167 156 8 1522 1162 81 0 7 chr5 122825693 122825842 -29711417 - B1_Mus1 SINE Alu 0 148 1 9 1522 2543 55 6 3 chr5 122825842 122826160 -29711099 - L1_Mus3 LINE L1 -14 6624 6306 9 1522 271 304 14 0 chr5 122826160 122826216 -29711043 - ID_B1 SINE B4 -69 155 99 8 1522 3131 48 5 15 chr5 122826286 122826690 -29710569 + L1Md_F2 LINE L1 6183 6582 0 9 1522 1180 126 26 10 chr5 122826713 122826905 -29710354 + B2_Mm2 SINE B2 1 195 0 9 1522 536 189 81 0 chr5 122827501 122827612 -29709647 + PB1D9 SINE Alu 1 120 0 9 1522 207 114 0 0 chr5 122827612 122827647 -29709612 + (A)n Simple_repeat Simple_repeat 1 35 0 9 1522 695 55 11 0 chr5 122827650 122827741 -29709518 + B1_Mus2 SINE Alu 56 147 0 9 1522 2945 34 6 0 chr5 122827868 122828220 -29709039 - MTA_Mm LTR MaLR 0 396 43 9 1522 424 304 34 7 chr5 122828244 122828393 -29708866 - B4A SINE B4 -139 153 1 9 1522 210 325 13 0 chr5 122829132 122829209 -29708050 - ID4_ SINE ID -4 79 2 9 1522 746 68 8 99 chr5 122829247 122829378 -29707881 + B1_Mus2 SINE Alu 2 120 -27 9 1522 489 161 0 0 chr5 122829386 122829473 -29707786 + (TG)n Simple_repeat Simple_repeat 2 88 0 9 1522 461 271 189 17 chr5 122829562 122829742 -29707517 + B3 SINE B2 1 211 -5 9 1522 479 207 62 18 chr5 122830280 122830393 -29706866 + PB1D9 SINE Alu 1 118 -2 9 1522 1231 48 0 0 chr5 122830484 122830630 -29706629 + B1_Mus2 SINE Alu 2 147 0 9 1522 530 224 37 0 chr5 122830638 122830745 -29706514 + PB1D7 SINE Alu 1 111 -9 9 1522 202 362 78 0 chr5 122830879 122830995 -29706264 - L2 LINE L2 -762 2657 2533 9 1522 403 281 38 76 chr5 122831791 122831949 -29705310 - RSINE1 SINE B4 -10 155 4 9 1522 480 250 48 0 chr5 122833094 122833198 -29704061 + PB1D7 SINE Alu 5 113 -7 9 1522 4404 16 0 35 chr5 122833286 122833797 -29703462 - MT2_Mm LTR ERVL 0 493 1 9 1522 305 0 0 0 chr5 122833797 122833835 -29703424 - MERVL-int LTR ERVL 0 5485 5448 9 1522 385 151 13 40 chr5 122833835 122833911 -29703348 - ORR1A3-int LTR MaLR -1323 640 567 9 1522 46299 15 6 0 chr5 122833911 122839249 -29698010 - MERVL-int LTR ERVL -114 5371 1 9 1522 4404 16 0 35 chr5 122839249 122839760 -29697499 - MT2_Mm LTR ERVL 0 493 1 9 1522 1134 65 0 7 chr5 122840312 122840451 -29696808 + B1_Mus2 SINE Alu 3 140 -7 9 1522 539 251 95 12 chr5 122840479 122840648 -29696611 - MIR SINE MIR -45 217 35 9 1522 243 156 0 22 chr5 122840692 122840738 -29696521 + PB1 SINE Alu 81 125 -2 9 1522 318 227 23 141 chr5 122840732 122840860 -29696399 + MT2B LTR ERVL 152 264 -337 9 1522 680 195 16 24 chr5 122840746 122840872 -29696387 + B1_Mur3 SINE Alu 2 126 -23 9 1522 247 271 182 32 chr5 122841196 122841322 -29695937 + ID_B1 SINE B4 78 222 -2 9 1522 236 253 156 10 chr5 122841341 122841437 -29695822 + RSINE1 SINE B4 4 113 -52 9 1522 1271 34 0 0 chr5 122841461 122841608 -29695651 + B1_Mus2 SINE Alu 1 147 0 9 1522 180 0 0 0 chr5 122842260 122842280 -29694979 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1522 191 191 20 60 chr5 122842593 122842643 -29694616 - L2c LINE L2 -86 3301 3254 9 1522 429 179 30 40 chr5 122842738 122842837 -29694422 + B1F SINE Alu 46 143 -6 9 1522 577 280 43 72 chr5 122842890 122843051 -29694208 + B4A SINE B4 90 241 -51 9 1522 344 210 433 75 chr5 122843051 122843252 -29694007 + B4A SINE B4 1 273 -19 9 1522 577 280 43 72 chr5 122843252 122843298 -29693961 + B4A SINE B4 242 291 -1 9 1522 288 77 0 0 chr5 122843313 122843352 -29693907 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1522 330 235 29 14 chr5 122843521 122843590 -29693669 - ID4_ SINE ID -7 76 7 9 1522 443 244 83 50 chr5 122843597 122843718 -29693541 - PB1 SINE Alu -2 125 1 9 1522 512 206 39 0 chr5 122843801 122843903 -29693356 + B2_Mm2 SINE B2 37 142 -53 9 1522 492 272 6 104 chr5 122844015 122844179 -29693080 + B3A SINE B2 38 185 -13 9 1522 1270 27 7 0 chr5 122844199 122844345 -29692914 - B1_Mus2 SINE Alu 0 147 1 9 1522 322 279 76 65 chr5 122844356 122844380 -29692879 + B4 SINE B4 60 84 -208 9 1522 500 180 10 16 chr5 122844380 122844476 -29692783 + B1_Mus1 SINE Alu 2 99 -21 9 1522 628 294 89 0 chr5 122844572 122844752 -29692507 + ID_B1 SINE B4 1 196 -28 9 1522 330 203 7 234 chr5 122844646 122844800 -29692459 + B1F SINE Alu 9 127 -22 9 1522 303 91 0 127 chr5 122844803 122844866 -29692393 + B1F SINE Alu 73 127 -22 9 1522 236 196 0 67 chr5 122844830 122844890 -29692369 + ID_B1 SINE B4 145 200 -24 9 1522 642 151 0 45 chr5 122845127 122845238 -29692021 + B1_Mur1 SINE Alu 37 142 -7 9 1522 1054 272 26 4 chr5 122845244 122845513 -29691746 + B4A SINE B4 4 278 -14 9 1522 207 0 0 0 chr5 122845605 122845628 -29691631 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1522 417 20 0 0 chr5 122845628 122845678 -29691581 + (GA)n Simple_repeat Simple_repeat 1 50 0 9 1522 431 184 0 84 chr5 122845719 122845762 -29691497 + B3 SINE B2 1 43 -173 9 1522 3302 56 5 0 chr5 122845762 122846156 -29691103 - MTA_Mm LTR MaLR 0 396 1 9 1522 431 246 92 65 chr5 122846156 122846287 -29690972 + B3 SINE B2 39 188 -5 9 1522 1208 68 0 0 chr5 122846420 122846567 -29690692 - B1_Mus2 SINE Alu 0 147 1 9 1522 25 0 0 0 chr5 122846570 122846595 -29690664 + AT_rich Low_complexity Low_complexity 1 25 0 9 1522 754 238 103 10 chr5 122847108 122847312 -29689947 + ID_B1 SINE B4 2 224 0 9 1522 280 306 35 23 chr5 122847430 122847517 -29689742 + PB1 SINE Alu 36 123 -4 9 1522 289 280 11 11 chr5 122847644 122847738 -29689521 - B4A SINE B4 -197 95 2 9 1522 298 215 116 21 chr5 122847786 122847881 -29689378 - B1F2 SINE Alu -11 138 35 9 1522 180 111 0 0 chr5 122848017 122848044 -29689215 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 9 1522 954 129 214 0 chr5 122848445 122848623 -29688636 + B3 SINE B2 1 216 0 9 1522 950 302 18 21 chr5 122848645 122848983 -29688276 - L1_Rod LINE L1 -82 5765 5429 9 1522 279 79 0 0 chr5 122849020 122849058 -29688201 + (TATG)n Simple_repeat Simple_repeat 2 39 0 9 1522 905 156 13 39 chr5 122849062 122849216 -29688043 + B1_Mur4 SINE Alu 1 150 0 9 1522 1099 209 19 0 chr5 122849227 122849437 -29687822 - B3 SINE B2 0 216 3 9 1522 443 268 46 63 chr5 122849496 122849702 -29687557 - L1M2 LINE L1 -823 5477 5273 9 1522 785 76 59 0 chr5 122849713 122849832 -29687427 - B1_Mur3 SINE Alu -1 148 23 9 1522 265 213 8 64 chr5 122850498 122850587 -29686672 + BC1_Mm scRNA scRNA 1 81 -2 9 1522 629 226 167 6 chr5 122851097 122851253 -29686006 + B3A SINE B2 2 182 -16 9 1522 671 175 13 83 chr5 122851289 122851445 -29685814 - B1_Mur4 SINE Alu 0 150 6 9 1522 231 228 0 17 chr5 122851448 122851506 -29685753 - B3 SINE B2 -54 162 106 9 1522 183 224 33 49 chr5 122851749 122851810 -29685449 + MIRb SINE MIR 135 194 -74 9 1522 192 143 0 0 chr5 122851869 122851911 -29685348 + (TTTC)n Simple_repeat Simple_repeat 1 42 0 9 1522 929 169 0 13 chr5 122851927 122852077 -29685182 + B1_Mur3 SINE Alu 2 149 0 9 1522 207 0 0 0 chr5 122852098 122852121 -29685138 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1522 416 302 55 8 chr5 122852127 122852254 -29685005 - B3 SINE B2 -82 134 2 9 1522 545 299 77 5 chr5 122852289 122852484 -29684775 + MER58A DNA MER1_type 16 224 0 9 1522 283 253 71 12 chr5 122852873 122852957 -29684302 + PB1 SINE Alu 39 127 0 9 1522 846 187 14 0 chr5 122853725 122853864 -29683395 + B1_Mur2 SINE Alu 9 149 0 9 1522 351 0 0 0 chr5 122854277 122854316 -29682943 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1522 613 278 34 75 chr5 122854343 122854638 -29682621 - B4A SINE B4 -8 284 2 9 1522 515 243 0 45 chr5 122854784 122854896 -29682363 + RSINE1 SINE B4 5 111 -54 9 1522 216 97 0 0 chr5 122854918 122854949 -29682310 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 1522 222 234 0 21 chr5 122855463 122855511 -29681748 + (TG)n Simple_repeat Simple_repeat 2 48 0 9 1522 315 277 108 10 chr5 122855549 122855651 -29681608 - ID_B1 SINE B4 -28 196 85 9 1522 427 257 57 7 chr5 122856265 122856406 -29680853 - B1F SINE Alu -1 148 1 9 1522 487 273 59 97 chr5 122856406 122856694 -29680565 - L1MB7 LINE L1 -39 6145 5869 9 1522 820 308 122 25 chr5 122856727 122857284 -29679975 - L1MB8 LINE L1 -250 5928 5318 9 1522 971 137 0 28 chr5 122857312 122857455 -29679804 - B1_Mur3 SINE Alu -8 141 3 9 1522 1364 167 145 0 chr5 122857522 122857798 -29679461 - Lx5 LINE L1 0 7050 6735 9 1522 409 244 104 6 chr5 122857793 122857966 -29679293 - L1MB8 LINE L1 -848 5298 5109 9 1522 1232 87 70 0 chr5 122857969 122858141 -29679118 - B2_Mm2 SINE B2 -9 186 3 9 1522 21 0 0 0 chr5 122858173 122858194 -29679065 + AT_rich Low_complexity Low_complexity 1 21 0 9 1522 370 206 29 0 chr5 122858243 122858311 -29678948 - B3A SINE B2 -128 70 1 9 1522 338 257 132 0 chr5 122858314 122858446 -29678813 - L1MB7 LINE L1 -1153 4990 4839 9 1522 679 181 59 15 chr5 122858446 122858581 -29678678 + B1_Mur1 SINE Alu 1 141 -8 9 1522 338 246 131 0 chr5 122858581 122858605 -29678654 - L1MB7 LINE L1 -1305 4841 4818 9 1522 632 237 36 7 chr5 122858656 122858796 -29678463 + B1F1 SINE Alu 1 144 -5 9 1522 609 40 0 0 chr5 122858989 122859065 -29678194 + (CA)n Simple_repeat Simple_repeat 2 77 0 9 1522 1294 174 14 5 chr5 122859117 122859331 -29677928 + B3 SINE B2 1 216 0 9 1522 424 246 35 52 chr5 122859352 122859468 -29677791 - B1_Mur2 SINE Alu -1 148 35 9 1522 200 59 29 0 chr5 122859518 122859552 -29677707 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1522 1052 58 0 62 chr5 122859552 122859698 -29677561 - B1_Mus1 SINE Alu -10 138 2 9 1522 768 242 18 18 chr5 122860356 122860368 -29676891 - B3 SINE B2 0 216 207 9 1522 216 0 0 0 chr5 122860368 122860392 -29676867 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 9 1522 768 242 18 18 chr5 122860392 122860547 -29676712 - B3 SINE B2 -10 206 49 9 1522 345 240 122 15 chr5 122860565 122860696 -29676563 - RMER17C LTR ERVK -30 380 236 1 1522 1237 36 0 0 chr5 122861330 122861469 -29675790 + B1_Mus1 SINE Alu 2 140 -8 1 1522 219 175 25 0 chr5 122861478 122861518 -29675741 + GA-rich Low_complexity Low_complexity 4 44 0 1 1522 321 26 0 0 chr5 122861548 122861586 -29675673 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1522 414 57 0 0 chr5 122861580 122861633 -29675626 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 1 1522 268 275 0 104 chr5 122861635 122861712 -29675547 + BC1_Mm scRNA scRNA 6 74 -78 1 1522 321 26 0 0 chr5 122861713 122861751 -29675508 + (TAA)n Simple_repeat Simple_repeat 1 38 0 1 1522 23 0 0 0 chr5 122861955 122861978 -29675281 + AT_rich Low_complexity Low_complexity 1 23 0 1 1522 884 117 39 0 chr5 122862231 122862359 -29674900 + B1_Mus2 SINE Alu 15 147 0 1 1522 221 0 0 31 chr5 122862612 122862644 -29674615 - B3A SINE B2 -166 32 2 1 1522 395 335 25 25 chr5 122863133 122863181 -29674078 + ID SINE ID 31 81 -143 1 1522 812 265 34 10 chr5 122863181 122863387 -29673872 + B3 SINE B2 1 211 -5 1 1522 554 252 0 0 chr5 122863393 122863500 -29673759 + B1_Mus2 SINE Alu 6 112 -35 1 1522 267 327 0 106 chr5 122863400 122863513 -29673746 + MT2B LTR ERVL 177 277 -324 1 1522 258 268 80 30 chr5 122863558 122863658 -29673601 - RMER5 LTR ERV1 -410 124 20 1 1522 1431 50 5 32 chr5 122863691 122863879 -29673380 - B2_Mm1t SINE B2 -7 186 4 1 1522 28 48 0 0 chr5 122863965 122864007 -29673252 + AT_rich Low_complexity Low_complexity 1 42 0 1 1522 346 272 87 0 chr5 122864007 122864110 -29673149 + PB1D7 SINE Alu 2 113 -7 1 1522 883 154 0 0 chr5 122864426 122864556 -29672703 + B1_Mus2 SINE Alu 1 130 -17 1 1522 1283 119 5 16 chr5 122864666 122864853 -29672406 - B2_Mm1t SINE B2 -8 185 1 1 1522 1033 72 0 48 chr5 122864876 122864978 -29672281 - B1_Mus1 SINE Alu -9 139 44 1 1522 5077 101 31 30 chr5 122864978 122865786 -29671473 + RMER17D2 LTR ERVK 1 809 0 1 1522 1033 72 0 48 chr5 122865786 122865828 -29671431 - B1_Mus1 SINE Alu -105 43 2 1 1522 440 33 33 0 chr5 122865833 122865894 -29671365 + (TATG)n Simple_repeat Simple_repeat 2 64 0 1 1522 529 116 4 40 chr5 122866295 122866409 -29670850 - B1_Mus2 SINE Alu -45 104 1 1 1522 395 219 0 0 chr5 122866349 122866422 -29670837 - ID_B1 SINE B4 -83 141 69 1 1522 398 142 44 0 chr5 122866637 122866723 -29670536 - B1_Mur4 SINE Alu -12 138 44 1 1522 309 320 107 86 chr5 122866965 122867208 -29670051 - L1MB8 LINE L1 -213 5965 5718 1 1522 1133 73 139 6 chr5 122867225 122867391 -29669868 + B2_Mm1a SINE B2 1 188 -5 1 1522 781 190 28 7 chr5 122867407 122867550 -29669709 - B1_Mur2 SINE Alu -1 148 3 1 1522 429 214 125 37 chr5 122867550 122867686 -29669573 - B1F SINE Alu -1 148 1 1 1522 725 212 106 72 chr5 122867777 122867985 -29669274 - B3 SINE B2 -1 215 1 1 1522 2470 134 10 41 chr5 122868044 122868456 -29668803 - RLTR1D LTR ERV1 -16 589 191 1 1522 2334 58 58 0 chr5 122868440 122868750 -29668509 + RLTR10C LTR ERVK 109 436 0 1 1522 3490 72 50 6 chr5 122868750 122869253 -29668006 - RLTR10-int LTR ERVK -175 1812 1288 1 1522 1415 96 5 5 chr5 122869256 122869465 -29667794 - IAP-d-int LTR ERVK -667 5875 5667 1 1522 3374 59 95 17 chr5 122869469 122869952 -29667307 - IAP-d-int LTR ERVK -1015 5527 5007 1 1522 688 209 26 0 chr5 122869952 122870105 -29667154 - IAP-d-int LTR ERVK -6039 503 347 1 1522 2243 78 3 20 chr5 122870099 122870478 -29666781 - IAP-d-int LTR ERVK -1381 606 54 1 1522 2977 66 43 15 chr5 122870478 122870877 -29666382 - RLTR10A LTR ERVK 0 411 2 1 1522 1194 109 5 32 chr5 122870902 122871092 -29666167 + B2_Mm2 SINE B2 3 187 -8 1 1522 323 296 110 25 chr5 122871163 122871281 -29665978 - RSINE1 SINE B4 -14 151 24 1 1522 249 33 0 0 chr5 122871355 122871385 -29665874 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1522 652 179 54 0 chr5 122871391 122871503 -29665756 - B1_Mur4 SINE Alu -8 142 25 1 1522 1159 116 17 0 chr5 122871522 122871694 -29665565 - B2_Mm2 SINE B2 -20 175 1 1 1522 198 0 0 0 chr5 122871703 122871725 -29665534 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1522 818 219 47 26 chr5 122871730 122871922 -29665337 - B3 SINE B2 -13 203 8 1 1522 574 255 8 139 chr5 122873023 122873279 -29663980 - ID_B1 SINE B4 -3 221 3 1 1522 1182 30 0 0 chr5 122873489 122873624 -29663635 + B1_Mus1 SINE Alu 1 135 -13 1 1522 192 40 0 0 chr5 122873624 122873649 -29663610 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1522 1476 39 67 0 chr5 122873969 122873989 -29663270 - B2_Mm1a SINE B2 0 193 174 1 1522 197 0 71 0 chr5 122873989 122874017 -29663242 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1 1522 1476 39 67 0 chr5 122874017 122874176 -29663083 - B2_Mm1a SINE B2 -20 173 3 1 1522 3327 38 2 10 chr5 122874633 122875032 -29662227 + MTA_Mm LTR MaLR 1 396 0 1 1522 418 235 19 29 chr5 122875169 122875274 -29661985 - PB1D9 SINE Alu -16 104 1 1 1522 353 266 38 14 chr5 122875274 122875368 -29661891 - ID_B1 SINE B4 -113 179 82 1 1522 1062 62 0 99 chr5 122875383 122875545 -29661714 - B1_Mus2 SINE Alu 0 147 2 1 1522 689 253 31 55 chr5 122875725 122875888 -29661371 - B3 SINE B2 -57 159 1 1 1522 397 310 35 110 chr5 122875890 122875952 -29661307 - ID_B1 SINE B4 -8 216 164 1 1522 1388 89 21 0 chr5 122875952 122876143 -29661116 - B2_Mm2 SINE B2 0 195 1 1 1522 397 310 35 110 chr5 122876143 122876225 -29661034 - ID_B1 SINE B4 -61 163 83 1 1522 630 221 63 21 chr5 122876268 122876411 -29660848 - B1_Mur2 SINE Alu 0 149 1 1 1522 1001 130 0 20 chr5 122876434 122876568 -29660691 + B1_Mus2 SINE Alu 2 135 -12 1 1522 198 71 0 0 chr5 122876568 122876596 -29660663 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1522 1001 130 0 20 chr5 122876596 122876610 -29660649 + B1_Mus2 SINE Alu 136 146 -1 1 1522 210 258 48 16 chr5 122876878 122876941 -29660318 + ID4 SINE ID 1 65 -18 1 1522 252 0 0 0 chr5 122876944 122876972 -29660287 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1522 329 307 144 44 chr5 122877116 122877276 -29659983 + B3A SINE B2 1 176 -22 1 1522 463 261 36 0 chr5 122877558 122877669 -29659590 + PB1D7 SINE Alu 6 120 0 1 1522 975 47 148 0 chr5 122877889 122878017 -29659242 - B1_Mm SINE Alu 0 147 1 1 1522 213 65 0 0 chr5 122878342 122878373 -29658886 + (CAGT)n Simple_repeat Simple_repeat 4 34 0 1 1522 456 212 89 4 chr5 122878377 122878489 -29658770 - B1_Mus2 SINE Alu 0 147 2 1 1522 1273 105 10 26 chr5 122878549 122878744 -29658515 - B2_Mm2 SINE B2 0 195 4 1 1522 430 244 0 22 chr5 122878976 122879068 -29658191 - B1_Mur4 SINE Alu -60 90 1 1 1522 959 58 63 28 chr5 122879079 122879103 -29658156 - B1_Mm SINE Alu 0 147 118 1 1522 1159 83 0 0 chr5 122879103 122879248 -29658011 - B1_Mus2 SINE Alu 0 147 3 1 1522 959 58 63 28 chr5 122879248 122879365 -29657894 - B1_Mm SINE Alu -30 117 1 1 1522 298 242 0 16 chr5 122879258 122879380 -29657879 - ORR1B1-int LTR MaLR -755 754 635 1 1522 369 274 0 51 chr5 122879751 122879849 -29657410 + ID_B1 SINE B4 71 159 -65 1 1522 1533 148 148 0 chr5 122880035 122880313 -29656946 - ORR1B1 LTR MaLR 0 394 76 1 1522 1074 78 0 0 chr5 122880328 122880470 -29656789 - B1_Mus1 SINE Alu -1 147 6 1 1522 509 114 0 83 chr5 122880456 122880552 -29656707 - ORR1B1 LTR MaLR -305 89 2 1 1522 234 237 128 26 chr5 122880558 122880636 -29656623 - PB1D10 SINE Alu -31 86 1 1 1522 636 248 73 0 chr5 122880649 122880786 -29656473 - B3A SINE B2 -51 147 1 1 1522 216 0 0 0 chr5 122880792 122880816 -29656443 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1 1522 420 211 31 63 chr5 122880912 122881071 -29656188 - B3 SINE B2 -11 205 9 1 1522 369 291 9 9 chr5 122881089 122881200 -29656059 - PB1D9 SINE Alu -7 113 3 1 1522 326 143 0 0 chr5 122881238 122881287 -29655972 + B1_Mur4 SINE Alu 9 57 -93 1 1522 374 256 27 116 chr5 122881541 122881556 -29655703 + ID_B1 SINE B4 64 196 -28 1 1522 555 188 8 107 chr5 122881556 122881687 -29655572 + B1F SINE Alu 1 118 -31 1 1522 577 227 14 70 chr5 122881704 122881846 -29655413 + ID_B1 SINE B4 90 223 -1 1 1522 719 249 43 0 chr5 122881853 122882038 -29655221 + B3A SINE B2 1 193 -5 1 1522 533 294 38 108 chr5 122882080 122882189 -29655070 + ID_B1 SINE B4 2 224 0 1 1522 725 154 69 8 chr5 122882189 122882320 -29654939 + B1_Mus1 SINE Alu 10 148 0 1 1522 587 176 18 53 chr5 122882326 122882440 -29654819 + PB1D9 SINE Alu 10 119 -1 1 1522 734 243 68 11 chr5 122882962 122883153 -29654106 - B3 SINE B2 0 216 15 1 1522 431 258 10 9 chr5 122883594 122883708 -29653551 - B1F SINE Alu -9 108 1 1 1522 1425 86 37 0 chr5 122883975 122884162 -29653097 + B2_Mm2 SINE B2 1 194 -1 1 1522 220 135 68 0 chr5 122884313 122884387 -29652872 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1 1522 352 231 231 0 chr5 122884484 122884575 -29652684 + PB1D9 SINE Alu 9 120 0 1 1522 598 311 33 14 chr5 122884660 122884872 -29652387 - B3 SINE B2 0 216 1 1 1522 464 147 88 105 chr5 122884920 122885034 -29652225 + MT2B LTR ERVL 153 264 -337 1 1522 1037 16 0 31 chr5 122884938 122885068 -29652191 + B1_Mus2 SINE Alu 17 142 -5 1 1522 662 222 38 32 chr5 122885087 122885245 -29652014 - RSINE1 SINE B4 0 165 7 1 1522 394 284 9 0 chr5 122885283 122885392 -29651867 + PB1D10 SINE Alu 1 110 -7 1 1522 390 21 0 0 chr5 122885706 122885753 -29651506 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1522 180 0 0 0 chr5 122885879 122885899 -29651360 + (C)n Simple_repeat Simple_repeat 1 20 0 1 1522 439 254 178 0 chr5 122885903 122886021 -29651238 - ID_B1 SINE B4 0 224 86 1 1522 235 235 235 0 chr5 122886483 122886564 -29650695 + PB1D7 SINE Alu 21 120 0 1 1522 269 224 52 0 chr5 122886653 122886711 -29650548 + ID_B1 SINE B4 101 161 -63 1 1522 213 284 136 0 chr5 122886711 122886741 -29650518 + PB1D7 SINE Alu 20 119 -1 1 1522 520 147 6 13 chr5 122886753 122886850 -29650409 + B1_Mus2 SINE Alu 28 145 -2 1 1522 281 222 49 12 chr5 122887359 122887441 -29649818 - B3 SINE B2 -7 209 125 1 1522 950 277 33 28 chr5 122887391 122887688 -29649571 - ID_B1 SINE B4 -1 291 6 1 1522 322 320 46 15 chr5 122887719 122887849 -29649410 - RSINE1 SINE B4 -29 136 3 1 1522 730 222 57 33 chr5 122887858 122888068 -29649191 - B3 SINE B2 0 216 2 1 1522 1189 41 7 20 chr5 122888442 122888592 -29648667 - B1_Mus1 SINE Alu 0 148 1 1 1522 1157 100 67 0 chr5 122889023 122889203 -29648056 - B2_Mm1a SINE B2 0 193 2 1 1522 610 178 68 0 chr5 122890835 122890953 -29646306 + B1_Mus1 SINE Alu 2 127 -21 1 1522 307 293 126 31 chr5 122890991 122891118 -29646141 + RSINE1 SINE B4 23 161 -4 1 1522 1131 55 7 40 chr5 122891911 122892063 -29645196 + B1_Mus1 SINE Alu 2 148 0 1 1522 444 298 32 38 chr5 122892065 122892222 -29645037 + RSINE1 SINE B4 10 165 0 1 1522 1414 82 11 0 chr5 122892274 122892457 -29644802 - B2_Mm2 SINE B2 -9 186 2 1 1522 22 35 0 0 chr5 122892457 122892486 -29644773 + AT_rich Low_complexity Low_complexity 1 29 0 1 1522 1139 181 72 0 chr5 122893434 122893627 -29643632 - B3 SINE B2 -9 207 1 1 1522 228 227 132 33 chr5 122894800 122894891 -29642368 + PB1D10 SINE Alu 10 109 -8 1 1522 732 174 241 140 chr5 122895551 122895858 -29641401 - ORR1C2 LTR MaLR -16 368 31 1 1522 683 121 25 33 chr5 122895860 122895980 -29641279 + PB1D9 SINE Alu 2 120 0 1 1522 700 0 0 0 chr5 122897732 122897817 -29639442 - L1Md_A LINE L1 0 6582 6498 1 1522 1313 85 37 11 chr5 122898384 122898574 -29638685 - B2_Mm2 SINE B2 0 195 1 1 1522 676 106 174 0 chr5 122899315 122899436 -29637823 - B1_Mur1 SINE Alu -6 143 3 1 1522 348 233 126 11 chr5 122899477 122899564 -29637695 + ID_B1 SINE B4 102 198 -26 1 1522 781 159 20 40 chr5 122899642 122899793 -29637466 - B1_Mur2 SINE Alu 0 149 2 1 1522 389 219 26 95 chr5 122901377 122901493 -29635766 + B1_Mur4 SINE Alu 2 109 -40 1 1522 608 219 102 24 chr5 122901541 122901747 -29635512 + URR1A DNA MER1_type 1 222 -4 1 1522 313 236 161 8 chr5 122901809 122901933 -29635326 + ID_B1 SINE B4 81 223 -1 1 1522 232 338 38 25 chr5 122901978 122902006 -29635253 + ID SINE ID 56 84 -140 1 1522 315 245 74 56 chr5 122902006 122902114 -29635145 + B1_Mm SINE Alu 1 110 -37 1 1522 281 155 243 40 chr5 122902879 122902953 -29634306 + B1F2 SINE Alu 4 92 -57 1 1522 370 250 98 61 chr5 122903055 122903187 -29634072 - RSINE1 SINE B4 -28 137 1 1 1522 233 114 65 43 chr5 122910535 122910581 -29626678 - B1F SINE Alu 0 149 103 1 1522 892 47 146 15 chr5 122912278 122912394 -29624865 + B1_Mus2 SINE Alu 1 135 -12 1 1522 180 0 0 0 chr5 122912394 122912414 -29624845 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1 1522 892 47 146 15 chr5 122912414 122912427 -29624832 + B1_Mus2 SINE Alu 136 147 0 1 1522 277 286 29 0 chr5 122912446 122912516 -29624743 + B4A SINE B4 74 145 -147 1 1522 408 250 28 34 chr5 122912462 122912572 -29624687 + B1F SINE Alu 6 111 -37 1 1522 1133 52 0 0 chr5 122913348 122913484 -29623775 + B1_Mm SINE Alu 2 137 -10 1 1522 300 27 0 0 chr5 122913722 122913759 -29623500 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1522 299 283 180 79 chr5 122913947 122914263 -29622996 - MTE2b LTR MaLR 0 379 6 1 1522 519 211 9 9 chr5 122914542 122914652 -29622607 + B1_Mus1 SINE Alu 39 148 0 1 1522 250 24 71 0 chr5 122914657 122914699 -29622560 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1522 394 161 0 60 chr5 122914883 122914963 -29622296 - B3 SINE B2 -115 80 7 1 1522 341 283 125 50 chr5 122914984 122915144 -29622115 - B3 SINE B2 -35 181 10 1 1522 374 237 79 40 chr5 122915204 122915305 -29621954 - L2 LINE L2 -1381 2038 1934 1 1522 999 53 90 0 chr5 122915319 122915452 -29621807 + B1_Mm SINE Alu 1 145 -2 1 1522 226 350 0 48 chr5 122915783 122915867 -29621392 - B1F SINE Alu -69 80 1 1 1522 1339 75 42 21 chr5 122916401 122916592 -29620667 + B2_Mm2 SINE B2 1 195 0 1 1522 297 0 0 0 chr5 122916993 122917026 -29620233 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1 1522 268 233 31 113 chr5 122917043 122917140 -29620119 - RSINE1 SINE B4 -19 146 58 1 1522 841 179 27 14 chr5 122917901 122918048 -29619211 + B1_Mur4 SINE Alu 2 150 0 1 1522 414 208 81 30 chr5 122918427 122918526 -29618733 - PB1D9 SINE Alu -8 112 9 1 1522 437 305 26 66 chr5 122918770 122918921 -29618338 - ID_B1 SINE B4 -1 223 79 1 1522 280 308 26 0 chr5 122919228 122919306 -29617953 - RSINE1 SINE B4 -11 154 75 1 1522 1449 139 260 43 chr5 122920783 122921083 -29616176 + ORR1B2 LTR MaLR 3 367 0 1 1522 398 297 58 7 chr5 122921357 122921496 -29615763 + B1F SINE Alu 4 149 0 1 1522 598 268 32 54 chr5 122921734 122921955 -29615304 + ID_B1 SINE B4 2 217 -7 1 1522 1158 80 73 17 chr5 122922166 122922345 -29614914 + B2_Mm2 SINE B2 1 189 -6 1 1522 22 0 0 0 chr5 122922465 122922487 -29614772 + AT_rich Low_complexity Low_complexity 1 22 0 1 1522 1645 32 0 0 chr5 122922493 122922680 -29614579 + B2_Mm1a SINE B2 2 188 -5 1 1522 858 145 27 7 chr5 122922720 122922866 -29614393 - B1_Mur3 SINE Alu 0 149 1 1 1522 463 191 22 0 chr5 122922947 122923036 -29614223 - B3 SINE B2 -123 93 3 1 1522 1332 125 274 12 chr5 122923489 122923814 -29613445 + RMER17C LTR ERVK 1 410 0 1 1522 236 192 48 131 chr5 122924255 122924339 -29612920 + B4 SINE B4 3 79 -213 1 1522 287 222 252 0 chr5 122924472 122924571 -29612688 + RSINE1 SINE B4 4 127 -38 1 1522 1392 70 43 0 chr5 122924792 122924977 -29612282 - B2_Mm2 SINE B2 -1 194 2 1 1522 779 175 55 24 chr5 122925655 122925819 -29611440 - URR1A DNA MER1_type -2 224 56 1 1522 421 245 54 9 chr5 122926109 122926220 -29611039 + PB1D9 SINE Alu 3 118 -2 1 1522 431 245 109 27 chr5 122926240 122926387 -29610872 - RSINE1 SINE B4 -6 159 1 1 1522 269 191 29 14 chr5 122926401 122926470 -29610789 - Lx7 LINE L1 -12 7684 7615 1 1522 386 222 53 38 chr5 122926538 122926669 -29610590 - Lx7 LINE L1 -314 7382 7250 1 1522 728 271 69 0 chr5 122927102 122927290 -29609969 + B3 SINE B2 2 202 -14 1 1522 256 254 167 29 chr5 122927309 122927447 -29609812 + RSINE1 SINE B4 5 161 -4 1 1522 627 228 0 9 chr5 122927495 122927610 -29609649 + B1_Mur2 SINE Alu 22 135 -14 1 1522 604 305 22 39 chr5 122927641 122927822 -29609437 - B3A SINE B2 -19 179 2 1 1522 222 256 0 0 chr5 122927904 122927947 -29609312 - ID_B1 SINE B4 -98 126 84 1 1522 265 224 60 0 chr5 122928369 122928436 -29608823 + MER46C DNA MER2_type 96 166 -172 1 1522 1211 87 23 0 chr5 122929833 122930006 -29607253 + B2_Mm1t SINE B2 2 178 -15 1 1522 444 61 0 10 chr5 122930021 122930134 -29607125 + B2_Mm2 SINE B2 48 195 0 1 1522 1113 85 89 18 chr5 122930368 122930536 -29606723 - B2_Mm2 SINE B2 -14 181 2 1 1522 212 274 221 23 chr5 122930540 122930567 -29606692 - B4A SINE B4 -42 250 94 1 1522 505 188 19 29 chr5 122930567 122930671 -29606588 - PB1D9 SINE Alu -9 111 9 1 1522 473 229 61 52 chr5 122931071 122931186 -29606073 + B1_Mur2 SINE Alu 2 117 -32 1 1522 320 257 85 111 chr5 122931072 122931225 -29606034 + MT2B2 LTR ERVL 167 315 -269 1 1522 262 114 0 0 chr5 122931232 122931267 -29605992 + U2 snRNA snRNA 1 35 -153 1 1522 368 340 36 60 chr5 122931285 122931422 -29605837 + RSINE1 SINE B4 4 137 -28 1 1522 195 42 0 0 chr5 122931422 122931446 -29605813 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1522 368 340 36 60 chr5 122931446 122931474 -29605785 + RSINE1 SINE B4 138 164 -1 1 1522 182 171 0 89 chr5 122931816 122931861 -29605398 - MER5B DNA MER1_type -15 163 123 1 1522 265 164 8 19 chr5 122932483 122932537 -29604722 + PB1D9 SINE Alu 1 42 -78 1 1522 435 214 106 49 chr5 122933127 122933250 -29604009 - B3 SINE B2 -11 205 76 1 1522 332 284 45 9 chr5 122933262 122933372 -29603887 - B3A SINE B2 -83 115 2 1 1522 634 313 103 16 chr5 122933588 122933841 -29603418 - B4A SINE B4 -10 282 8 1 1522 449 219 44 116 chr5 122933843 122934024 -29603235 + B2_Mm2 SINE B2 24 191 -4 1 1522 233 254 15 31 chr5 122934141 122934206 -29603053 + B1F1 SINE Alu 84 147 -2 1 1522 256 299 75 0 chr5 122934310 122934377 -29602882 - B3A SINE B2 -126 72 1 1 1522 778 223 129 47 chr5 122934528 122934721 -29602538 + B3 SINE B2 2 210 -6 1 1522 614 169 84 8 chr5 122934730 122934861 -29602398 + B1_Mm SINE Alu 5 145 -2 1 1522 1199 74 0 0 chr5 122934960 122935108 -29602151 + B1_Mus1 SINE Alu 1 148 0 1 1522 238 43 42 42 chr5 122935110 122935158 -29602101 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1 1522 229 266 28 138 chr5 122935250 122935359 -29601900 + MT2B LTR ERVL 155 251 -350 1 1522 385 303 12 30 chr5 122935266 122935379 -29601880 + PB1D10 SINE Alu 6 124 -23 1 1522 243 170 0 0 chr5 122935875 122935922 -29601337 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1522 608 169 76 8 chr5 122935929 122936048 -29601211 - B1_Mur2 SINE Alu -12 137 11 1 1522 1032 85 170 0 chr5 122936354 122936507 -29600752 + B2_Mm1t SINE B2 1 179 -14 1 1522 466 73 313 52 chr5 122936520 122936623 -29600636 + B2_Mm2 SINE B2 47 180 -15 1 1522 1124 56 0 27 chr5 122936623 122936769 -29600490 - B1_Mus2 SINE Alu -5 142 1 1 1522 466 73 313 52 chr5 122936769 122936780 -29600479 + B2_Mm2 SINE B2 181 191 -4 1 1522 1133 75 0 0 chr5 122937005 122937152 -29600107 + B1_Mus2 SINE Alu 1 147 0 1 1522 24 53 0 0 chr5 122937307 122937345 -29599914 + AT_rich Low_complexity Low_complexity 1 38 0 1 1522 22 0 0 0 chr5 122938202 122938224 -29599035 + AT_rich Low_complexity Low_complexity 1 22 0 1 1522 1257 91 20 65 chr5 122938234 122938433 -29598826 + B2_Mm2 SINE B2 1 190 -5 1 1522 444 152 28 0 chr5 122938433 122938527 -29598732 + B1_Mus2 SINE Alu 20 119 -1 1 1522 640 238 101 6 chr5 122938605 122938774 -29598485 + B3 SINE B2 3 187 -29 1 1522 28 71 0 0 chr5 122938861 122938917 -29598342 + AT_rich Low_complexity Low_complexity 1 56 0 1 1522 880 228 63 19 chr5 122938943 122939149 -29598110 + B3 SINE B2 2 216 0 1 1522 1194 75 0 0 chr5 122939486 122939633 -29597626 + B1_Mus2 SINE Alu 1 147 0 1 1522 192 77 0 0 chr5 122939634 122939660 -29597599 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1 1522 901 151 46 7 chr5 122939660 122939813 -29597446 - B2_Mm2 SINE B2 -35 160 2 1 1522 490 244 25 57 chr5 122939870 122939992 -29597267 + PB1D9 SINE Alu 2 119 -1 1 1522 403 309 18 0 chr5 122939995 122940105 -29597154 + PB1D10 SINE Alu 6 117 0 1 1522 532 154 11 3 chr5 122940107 122940199 -29597060 + B1_Mus2 SINE Alu 32 147 0 1 1522 256 256 77 31 chr5 122940406 122940497 -29596762 + B1F1 SINE Alu 22 120 0 1 1522 1289 27 0 0 chr5 122940562 122940710 -29596549 + B1_Mus1 SINE Alu 1 148 0 1 1522 361 300 84 45 chr5 122941250 122941282 -29595977 - ID_B1 SINE B4 -47 245 134 1 1522 636 164 9 35 chr5 122941282 122941396 -29595863 - B1_Mus1 SINE Alu -28 120 10 1 1522 295 246 24 134 chr5 122941298 122941425 -29595834 - MT2B LTR ERVL -343 258 146 1 1522 270 246 55 55 chr5 122941392 122941465 -29595794 + B1_Mur2 SINE Alu 77 149 0 1 1522 361 300 84 45 chr5 122941396 122941411 -29595848 - ID_B1 SINE B4 -47 133 73 1 1522 1288 78 84 0 chr5 122941478 122941657 -29595602 + B2_Mm2 SINE B2 2 195 0 1 1522 516 214 120 138 chr5 122942180 122942397 -29594862 + B3 SINE B2 1 213 -3 1 1522 395 107 308 4 chr5 122942458 122942545 -29594714 + B1_Mm SINE Alu 1 107 -10 1 1522 216 0 0 0 chr5 122942545 122942569 -29594690 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1522 188 277 79 67 chr5 122942676 122942765 -29594494 + MIRb SINE MIR 168 257 -11 1 1522 365 283 116 32 chr5 122942911 122943101 -29594158 + CYRA11_Mm Unknown Y-chromosome 140 345 -272 1 1522 1222 154 33 9 chr5 122942941 122943151 -29594108 - URR1B DNA MER1_type -10 215 1 1 1522 495 231 38 64 chr5 122943175 122943332 -29593927 + RSINE1 SINE B4 3 155 -10 1 1522 1280 87 10 42 chr5 122943508 122943701 -29593558 - B2_Mm1t SINE B2 -4 189 3 1 1522 444 300 24 40 chr5 122943728 122943853 -29593406 + RSINE1 SINE B4 2 124 -41 1 1522 527 184 100 9 chr5 122943891 122944001 -29593258 + B1_Mus1 SINE Alu 25 144 -4 1 1522 396 0 0 0 chr5 122944011 122944055 -29593204 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1522 232 271 34 0 chr5 122944991 122945050 -29592209 + ID4_ SINE ID 13 73 -10 1 1522 327 302 225 6 chr5 122945112 122945285 -29591974 + B3 SINE B2 1 211 -5 1 1523 290 246 29 14 chr5 122946059 122946129 -29591130 + ID4 SINE ID 12 82 -1 1 1523 725 275 35 55 chr5 122946158 122946358 -29590901 - B3A SINE B2 -1 197 2 1 1523 289 321 94 0 chr5 122946358 122946459 -29590800 - B1F2 SINE Alu -37 112 2 1 1523 27 29 0 0 chr5 122946634 122946668 -29590591 + AT_rich Low_complexity Low_complexity 1 34 0 1 1523 450 202 9 55 chr5 122946814 122946924 -29590335 + B1_Mur2 SINE Alu 45 149 0 1 1523 221 245 59 86 chr5 122947020 122947172 -29590087 + L2a LINE L2 3092 3239 -187 1 1523 409 333 29 43 chr5 122947374 122947512 -29589747 - ID_B1 SINE B4 -8 216 81 1 1523 189 0 0 0 chr5 122947595 122947616 -29589643 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1523 297 309 105 35 chr5 122947858 122947972 -29589287 + B1F1 SINE Alu 12 133 -16 1 1523 698 111 185 0 chr5 122947970 122948078 -29589181 + B1_Mus1 SINE Alu 11 138 -10 1 1523 181 0 0 65 chr5 122948078 122948109 -29589150 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1523 662 325 93 15 chr5 122948109 122948378 -29588881 + B4A SINE B4 1 290 -2 1 1523 200 176 0 0 chr5 122950126 122950160 -29587099 + GA-rich Low_complexity Low_complexity 3 36 0 1 1523 198 143 0 0 chr5 122950829 122950864 -29586395 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1523 201 162 27 0 chr5 122951328 122951365 -29585894 + C-rich Low_complexity Low_complexity 2 39 0 1 1523 24 53 0 0 chr5 122951532 122951570 -29585689 + GC_rich Low_complexity Low_complexity 1 38 0 1 1523 207 161 0 0 chr5 122951808 122951839 -29585420 + polypyrimidine Low_complexity Low_complexity 1 31 0 1 1523 216 246 0 16 chr5 122952155 122952217 -29585042 + (CGG)n Simple_repeat Simple_repeat 1 61 0 1 1523 47 82 0 0 chr5 122952315 122952425 -29584834 + GC_rich Low_complexity Low_complexity 1 110 0 1 1523 338 312 40 8 chr5 122953252 122953378 -29583881 + ID_B1 SINE B4 95 224 0 1 1523 704 53 0 21 chr5 122954111 122954208 -29583051 - BC1_Mm scRNA scRNA -57 95 1 1 1523 1383 114 0 0 chr5 122954678 122954871 -29582388 + B2_Mm2 SINE B2 2 194 -1 1 1523 754 106 8 8 chr5 122955144 122955268 -29581991 + (GAA)n Simple_repeat Simple_repeat 2 125 0 1 1523 655 186 114 15 chr5 122955295 122955426 -29581833 + B1F2 SINE Alu 6 149 0 1 1523 364 333 137 15 chr5 122955772 122956043 -29581216 - L3 LINE CR1 -156 4333 4030 1 1523 1130 53 0 0 chr5 122956066 122956199 -29581060 + B1_Mus1 SINE Alu 2 134 -14 1 1523 1111 189 87 0 chr5 122956385 122956581 -29580678 - B3 SINE B2 -3 213 1 1 1523 604 273 18 89 chr5 122956589 122956758 -29580501 - B3A SINE B2 0 198 42 1 1523 563 160 64 0 chr5 122956797 122956891 -29580368 + U6 snRNA snRNA 1 100 -7 1 1523 1015 183 27 5 chr5 122956913 122957100 -29580159 + Lx6 LINE L1 7270 7460 0 1 1523 357 85 0 0 chr5 122957149 122957196 -29580063 - ORR1B1 LTR MaLR -8 386 340 1 1523 333 93 0 0 chr5 122957196 122957250 -29580009 + (T)n Simple_repeat Simple_repeat 1 54 0 1 1523 1270 27 7 0 chr5 122957250 122957397 -29579862 - B1_Mus1 SINE Alu 0 148 1 1 1523 2125 130 62 1 chr5 122957397 122957738 -29579521 - ORR1B1 LTR MaLR -42 352 1 1 1523 353 191 38 0 chr5 122957742 122957847 -29579412 + (TA)n Simple_repeat Simple_repeat 2 110 0 1 1523 508 194 21 11 chr5 122958026 122958120 -29579139 + B2_Mm2 SINE B2 1 95 -100 1 1523 1906 132 65 16 chr5 122958117 122958304 -29578955 - ORR1B1 LTR MaLR -22 372 186 1 1523 567 43 0 0 chr5 122958304 122958374 -29578885 + (GGA)n Simple_repeat Simple_repeat 2 71 0 1 1523 1906 132 65 16 chr5 122958374 122958508 -29578751 - ORR1B1 LTR MaLR -209 185 35 1 1523 1188 50 0 0 chr5 122958521 122958660 -29578599 + B1_Mus1 SINE Alu 1 139 -9 1 1523 21 0 0 0 chr5 122958682 122958703 -29578556 + AT_rich Low_complexity Low_complexity 1 21 0 1 1523 442 316 85 17 chr5 122958829 122959006 -29578253 + MamRep137 DNA TcMar? 213 401 -43 1 1523 235 234 62 38 chr5 122959043 122959123 -29578136 - PB1D7 SINE Alu -38 82 1 1 1523 522 182 11 0 chr5 122959543 122959631 -29577628 - B1_Mur2 SINE Alu -7 142 54 1 1523 190 329 14 0 chr5 122960151 122960221 -29577038 + L2b LINE L2 3305 3375 0 1 1523 733 189 280 0 chr5 122962047 122962222 -29575037 - ID_B1 SINE B4 0 224 1 1 1523 561 287 36 22 chr5 122962580 122962719 -29574540 + B1F SINE Alu 1 141 -8 1 1523 818 222 63 43 chr5 122962737 122962944 -29574315 + B3 SINE B2 5 215 -1 1 1523 1248 48 0 0 chr5 122963072 122963217 -29574042 - B1_Mm SINE Alu 0 147 3 1 1523 383 109 26 26 chr5 122963228 122963334 -29573925 - B2_Mm2 SINE B2 -6 189 47 1 1523 1325 85 11 0 chr5 122963361 122963537 -29573722 - B2_Mm1t SINE B2 -14 179 2 1 1523 21 71 0 0 chr5 122963976 122964018 -29573241 + GC_rich Low_complexity Low_complexity 1 42 0 1 1523 316 233 0 27 chr5 122964056 122964131 -29573128 - AmnSINE1 SINE SINE -238 337 265 1 1523 342 67 0 0 chr5 122964835 122964880 -29572379 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 1 1523 262 299 86 78 chr5 122964900 122964991 -29572268 + B4A SINE B4 26 123 -169 1 1523 237 33 0 0 chr5 122964991 122965021 -29572238 + (AGGTG)n Simple_repeat Simple_repeat 1 30 0 1 1523 262 299 86 78 chr5 122965021 122965045 -29572214 + B4A SINE B4 124 142 -150 1 1523 369 43 0 0 chr5 122965154 122965201 -29572058 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1523 632 217 40 80 chr5 122965244 122965444 -29571815 - Lx6 LINE L1 -16 7444 7253 1 1523 571 217 124 8 chr5 122965446 122965567 -29571692 + B1_Mus2 SINE Alu 6 140 -7 1 1523 288 312 77 71 chr5 122965735 122965890 -29571369 - L1M3 LINE L1 -401 5770 5615 1 1523 474 18 0 0 chr5 122965891 122965946 -29571313 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1523 479 227 9 26 chr5 122966026 122966139 -29571120 - PB1D10 SINE Alu 0 117 7 1 1523 401 269 34 86 chr5 122967312 122967487 -29569772 - ID_B1 SINE B4 -57 167 2 1 1523 746 190 22 7 chr5 122967707 122967845 -29569414 - B1_Mus2 SINE Alu -7 140 1 1 1523 192 77 0 0 chr5 122967936 122967962 -29569297 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1523 234 267 0 16 chr5 122969586 122969647 -29567612 + L1M LINE L1 5369 5428 -696 1 1523 209 269 0 0 chr5 122970112 122970164 -29567095 + MIR SINE MIR 94 145 -63 1 1523 356 242 189 55 chr5 122970304 122970431 -29566828 + RSINE1 SINE B4 1 144 -21 1 1523 1401 53 1 1 chr5 122971543 122972464 -29564795 + (CCTA)n Simple_repeat Simple_repeat 1 921 0 1 1523 722 270 6 0 chr5 122972541 122972700 -29564559 - ID_B1 SINE B4 -15 209 50 1 1523 601 282 11 69 chr5 122972728 122972878 -29564381 - RSINE1 SINE B4 0 165 23 1 1523 1302 137 69 32 chr5 122972878 122973096 -29564163 - URR1A DNA MER1_type 0 226 1 1 1523 601 282 11 69 chr5 122973096 122973120 -29564139 - RSINE1 SINE B4 -143 22 1 1 1523 451 210 151 0 chr5 122973389 122973503 -29563756 + B1_Mus2 SINE Alu 1 134 -15 1 1523 933 26 0 0 chr5 122973504 122973617 -29563642 + B1_Mus2 SINE Alu 1 113 -34 1 1523 615 234 13 58 chr5 122973619 122973773 -29563486 - B3 SINE B2 -38 178 32 1 1523 474 320 58 0 chr5 122973804 122973960 -29563299 - RSINE1 SINE B4 0 165 1 1 1523 257 241 47 71 chr5 122973993 122974078 -29563181 - PB1D10 SINE Alu -24 93 11 1 1523 231 290 129 10 chr5 122974201 122974302 -29562957 + L2b LINE L2 3228 3340 -35 1 1523 357 24 0 0 chr5 122974553 122974595 -29562664 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1523 252 0 0 0 chr5 122974595 122974622 -29562637 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1523 429 20 0 0 chr5 122975712 122975762 -29561497 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1523 846 200 0 0 chr5 122976208 122976348 -29560911 + ID_B1 SINE B4 84 223 -1 1 1523 329 266 109 42 chr5 122976217 122976382 -29560877 - YREP_Mm Unknown Unknown -1505 307 132 1 1523 231 36 0 0 chr5 122977626 122977654 -29559605 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 1 1523 512 108 9 81 chr5 122977654 122977765 -29559494 - Lx4A LINE L1 -11 7047 6945 1 1523 183 226 35 70 chr5 122978622 122978679 -29558580 + L3 LINE CR1 896 950 -3539 1 1523 412 272 91 8 chr5 122978913 122979113 -29558146 + MLT1C LTR MaLR 267 467 0 1 1523 243 347 89 51 chr5 122979707 122979865 -29557394 - MIR SINE MIR -68 194 31 1 1523 294 50 0 0 chr5 122980049 122980089 -29557170 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1523 599 227 31 43 chr5 122981129 122981290 -29555969 + RMER15 LTR ERVL 1 159 -416 1 1523 316 0 45 0 chr5 122981359 122981403 -29555856 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 1 1523 571 244 189 5 chr5 122981404 122981589 -29555670 + RMER15 LTR ERVL 341 559 -16 1 1523 873 223 4 104 chr5 122981965 122982096 -29555163 + B3 SINE B2 1 130 -86 1 1523 1183 58 0 0 chr5 122982096 122982233 -29555026 + B1_Mus2 SINE Alu 2 138 -9 1 1523 371 38 19 0 chr5 122982233 122982286 -29554973 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 1 1523 873 223 4 104 chr5 122982286 122982393 -29554866 + B3 SINE B2 131 215 -1 1 1523 421 223 43 0 chr5 122982485 122982579 -29554680 + B1F SINE Alu 1 98 -51 1 1523 219 333 13 0 chr5 122982645 122982720 -29554539 + L2b LINE L2 2970 3045 -330 1 1523 695 95 13 26 chr5 122983089 122983240 -29554019 + (TCTCTG)n Simple_repeat Simple_repeat 2 150 0 1 1523 342 0 0 0 chr5 122983242 122983280 -29553979 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1523 256 246 164 6 chr5 122983281 122983451 -29553808 + L1MB1 LINE L1 3939 4148 -1998 1 1523 282 208 84 109 chr5 122983533 122983652 -29553607 + PB1D10 SINE Alu 2 117 0 1 1523 198 0 0 0 chr5 122983710 122983732 -29553527 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 1 1523 488 292 162 30 chr5 122983753 122984270 -29552989 + L1MB1 LINE L1 5500 6078 -111 1 1523 662 161 0 41 chr5 122984317 122984440 -29552819 + PB1D9 SINE Alu 3 120 0 1 1523 189 0 0 0 chr5 122984569 122984590 -29552669 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1 1523 286 168 28 13 chr5 122984632 122984710 -29552549 + L1MB8 LINE L1 6005 6092 -82 1 1523 218 307 244 9 chr5 122984727 122984842 -29552417 + RSINE1 SINE B4 2 143 -22 1 1523 833 143 15 0 chr5 122984872 122985005 -29552254 + B1_Mus2 SINE Alu 13 147 0 1 1523 538 262 43 3 chr5 122986258 122986414 -29550845 - B3A SINE B2 -12 204 40 1 1523 278 256 52 30 chr5 122986459 122986567 -29550692 - B1F SINE Alu -26 123 7 1 1523 21 0 0 0 chr5 122987047 122987068 -29550191 + AT_rich Low_complexity Low_complexity 1 21 0 1 1523 859 261 17 0 chr5 122987108 122987284 -29549975 - B3A SINE B2 -19 179 1 1 1523 665 221 22 0 chr5 122987333 122987469 -29549790 + URR1B DNA MER1_type 2 140 -85 1 1523 1285 82 54 11 chr5 122987489 122987675 -29549584 + B2_Mm2 SINE B2 2 195 0 1 1523 393 127 0 16 chr5 122987676 122987740 -29549519 + URR1B DNA MER1_type 163 225 0 1 1523 617 267 24 24 chr5 122987829 122987907 -29549352 + ID SINE ID 2 79 -145 1 1523 277 365 0 42 chr5 122987907 122988027 -29549232 + PB1D10 SINE Alu 3 117 0 1 1523 207 0 0 0 chr5 122988913 122988936 -29548323 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1523 544 231 8 0 chr5 122989073 122989190 -29548069 - PB1D9 SINE Alu -2 118 1 1 1523 261 0 0 0 chr5 122989517 122989546 -29547713 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1523 974 55 47 0 chr5 122989550 122989677 -29547582 - B1_Mus1 SINE Alu -13 135 3 1 1523 967 121 29 0 chr5 122990062 122990202 -29547057 - B1_Mur2 SINE Alu 0 149 6 1 1523 524 244 0 17 chr5 122990410 122990527 -29546732 - PB1D10 SINE Alu -2 115 1 1 1523 227 307 13 26 chr5 122990732 122990809 -29546450 + B4A SINE B4 8 83 -209 1 1523 731 206 162 22 chr5 122991067 122991246 -29546013 + B3 SINE B2 6 209 -7 1 1523 238 226 86 72 chr5 122991582 122991683 -29545576 - ID4 SINE ID -48 104 2 1 1523 265 246 16 32 chr5 122991713 122991776 -29545483 + ID2 SINE ID 3 64 -19 1 1523 990 217 49 0 chr5 122992779 122992963 -29544296 + B3 SINE B2 19 211 -5 1 1523 284 281 32 43 chr5 122995212 122995305 -29541954 - PB1 SINE Alu -30 97 6 1 1523 335 225 110 48 chr5 122995574 122995719 -29541540 - Tigger7 DNA MER2_type -39 2452 2299 1 1523 286 324 54 9 chr5 122995721 122995833 -29541426 - Tigger7 DNA MER2_type -2370 121 5 1 1523 705 234 46 20 chr5 122995988 122996184 -29541075 - B3 SINE B2 -11 205 5 1 1523 189 0 0 0 chr5 122996702 122996723 -29540536 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1523 729 135 0 0 chr5 122996731 122996835 -29540424 - B3 SINE B2 -112 104 1 1 1523 28 0 0 0 chr5 122997758 122997786 -29539473 + AT_rich Low_complexity Low_complexity 1 28 0 1 1523 462 101 0 0 chr5 122999873 122999942 -29537317 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1523 482 212 60 8 chr5 123000598 123000731 -29536528 - HAL1b LINE L1 -267 1742 1603 1 1523 615 198 0 0 chr5 123001439 123001550 -29535709 + B3 SINE B2 1 111 -105 2 1523 232 94 0 0 chr5 123001609 123001641 -29535618 + U2 snRNA snRNA 4 35 -153 3 1523 863 161 18 0 chr5 123001671 123001839 -29535420 + GA-rich Low_complexity Low_complexity 1 171 0 4 1523 21 0 0 0 chr5 123002204 123002225 -29535034 + AT_rich Low_complexity Low_complexity 1 21 0 5 1523 336 164 15 0 chr5 123002233 123002300 -29534959 + B1_Mur3 SINE Alu 76 143 -6 6 1523 699 46 0 0 chr5 123002305 123002392 -29534867 + (GGAGA)n Simple_repeat Simple_repeat 3 89 0 7 1523 850 213 131 0 chr5 123002403 123002586 -29534673 - B3 SINE B2 -9 207 1 8 1523 351 228 0 12 chr5 123003386 123003466 -29533793 + B4A SINE B4 3 81 -211 9 1523 1180 62 0 14 chr5 123003781 123003929 -29533330 + B1_Mm SINE Alu 2 147 0 1 1523 215 190 40 18 chr5 123004215 123004445 -29532814 + (TA)n Simple_repeat Simple_repeat 1 235 0 1 1523 1186 175 15 5 chr5 123004489 123004690 -29532569 - B3 SINE B2 -13 203 1 1 1523 1287 102 143 0 chr5 123004898 123005094 -29532165 + URR1B DNA MER1_type 2 225 0 1 1523 596 158 8 0 chr5 123005126 123005259 -29532000 + CT-rich Low_complexity Low_complexity 1 134 0 1 1523 212 296 171 0 chr5 123005263 123005351 -29531908 - RSINE1 SINE B4 -6 159 57 1 1523 316 346 62 9 chr5 123005867 123006077 -29531182 + L1MC4a LINE L1 5629 5849 -2033 1 1523 1267 97 26 36 chr5 123006113 123006305 -29530954 + B2_Mm2 SINE B2 1 190 -5 1 1523 345 138 31 0 chr5 123006542 123006607 -29530652 + URR1B DNA MER1_type 159 225 0 1 1523 340 262 120 9 chr5 123006665 123006773 -29530486 - ID_B1 SINE B4 -17 207 88 1 1523 333 126 67 22 chr5 123006779 123006868 -29530391 + CT-rich Low_complexity Low_complexity 1 93 0 1 1523 491 205 35 9 chr5 123006893 123007006 -29530253 - B1_Mur1 SINE Alu -5 144 29 2 1523 324 0 0 0 chr5 123007008 123007044 -29530215 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1523 446 244 57 0 chr5 123007049 123007172 -29530087 - B1F SINE Alu -15 134 5 2 1523 1360 225 107 11 chr5 123007398 123007762 -29529497 + MTD LTR MaLR 14 412 -7 2 1523 530 185 55 9 chr5 123007820 123007929 -29529330 - PB1D9 SINE Alu -6 114 1 2 1523 601 144 0 35 chr5 123008057 123008172 -29529087 + B1_Mur2 SINE Alu 39 149 0 2 1523 376 270 37 60 chr5 123008844 123008978 -29528281 + L1MB4 LINE L1 6050 6180 0 2 1523 684 241 12 47 chr5 123009309 123009479 -29527780 + RSINE1 SINE B4 2 165 0 2 1523 310 258 9 102 chr5 123009495 123009603 -29527656 + MT2B LTR ERVL 161 258 -343 2 1523 800 168 14 21 chr5 123009507 123009647 -29527612 + B1_Mur2 SINE Alu 10 148 -1 2 1523 269 287 67 22 chr5 123009968 123010057 -29527202 - L2a LINE L2 -18 3408 3316 3 1523 463 208 10 29 chr5 123010651 123010755 -29526504 - HAL1 LINE L1 -612 1895 1794 3 1523 229 287 95 50 chr5 123010952 123011210 -29526049 - L2a LINE L2 -35 3391 3070 3 1523 252 0 0 0 chr5 123011221 123011249 -29526010 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1523 379 250 148 0 chr5 123012397 123012505 -29524754 + RSINE1 SINE B4 2 125 -40 3 1523 324 0 0 0 chr5 123012514 123012550 -29524709 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1523 253 260 34 19 chr5 123012599 123012689 -29524570 + B3A SINE B2 6 100 -98 3 1523 263 299 13 13 chr5 123012913 123012991 -29524268 + B3A SINE B2 62 139 -59 3 1523 360 0 0 0 chr5 123013020 123013060 -29524199 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1523 227 31 0 30 chr5 123013064 123013097 -29524162 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3 1523 708 165 0 50 chr5 123013116 123013237 -29524022 + B1_Mur1 SINE Alu 21 135 -14 3 1523 228 200 0 0 chr5 123013237 123013287 -29523972 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 4 1523 248 0 31 0 chr5 123013428 123013460 -29523799 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 4 1523 818 173 7 7 chr5 123013460 123013600 -29523659 - B1_Mur2 SINE Alu -9 140 1 4 1523 1209 22 0 0 chr5 123013750 123013887 -29523372 + B1_Mus2 SINE Alu 2 138 -9 4 1523 1989 101 52 0 chr5 123013943 123014249 -29523010 + ORR1A2 LTR MaLR 6 327 0 4 1523 436 242 80 61 chr5 123014250 123014413 -29522846 - B3 SINE B2 -34 182 17 4 1523 472 221 78 26 chr5 123014593 123014746 -29522513 - ID_B1 SINE B4 -63 161 1 4 1523 288 298 0 78 chr5 123014810 123014912 -29522347 - ID_B1 SINE B4 -6 218 125 4 1523 554 221 9 9 chr5 123015273 123015387 -29521872 + PB1D9 SINE Alu 3 116 -4 4 1523 233 346 0 19 chr5 123015493 123015599 -29521660 + BC1_Mm scRNA scRNA 1 104 -48 4 1523 360 208 12 105 chr5 123015609 123015695 -29521564 + ID4_ SINE ID 3 80 -3 5 1523 180 290 32 16 chr5 123015916 123015979 -29521280 + MIRc SINE MIR 56 119 -149 5 1523 499 235 49 32 chr5 123016407 123016530 -29520729 + B1_Mur2 SINE Alu 4 128 -21 5 1523 315 252 176 37 chr5 123017507 123017521 -29519738 - B4A SINE B4 -52 240 86 5 1523 583 202 8 25 chr5 123017521 123017643 -29519616 - PB1D9 SINE Alu 0 120 1 5 1523 312 27 0 0 chr5 123018014 123018051 -29519208 + (T)n Simple_repeat Simple_repeat 1 37 0 5 1523 571 108 21 0 chr5 123018051 123018144 -29519115 - PB1D9 SINE Alu 0 120 26 5 1523 243 0 0 0 chr5 123018853 123018880 -29518379 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1523 191 277 68 43 chr5 123019416 123019533 -29517726 - L2a LINE L2 -46 3380 3261 5 1523 230 222 17 161 chr5 123019680 123019798 -29517461 - B4A SINE B4 0 292 192 5 1523 213 242 97 0 chr5 123019843 123019905 -29517354 - B4A SINE B4 -216 76 9 5 1523 264 296 0 0 chr5 123019916 123019987 -29517272 - L2a LINE L2 -1307 2112 2042 5 1523 585 133 248 0 chr5 123019989 123020102 -29517157 + B1_Mur3 SINE Alu 1 141 -8 6 1523 763 221 0 13 chr5 123020223 123020374 -29516885 + B1F1 SINE Alu 1 149 0 6 1523 259 253 22 0 chr5 123021062 123021153 -29516106 + L1MEg LINE L1 766 858 -5226 6 1523 820 212 82 5 chr5 123021222 123021416 -29515843 + B3 SINE B2 2 210 -6 6 1523 613 229 76 0 chr5 123021561 123021705 -29515554 + RSINE1 SINE B4 4 158 -7 6 1523 434 234 78 31 chr5 123022947 123023075 -29514184 - B3 SINE B2 -35 181 48 6 1523 286 54 0 0 chr5 123023091 123023128 -29514131 - B1_Mur2 SINE Alu -38 111 75 6 1523 359 154 77 0 chr5 123023149 123023214 -29514045 - B3A SINE B2 -126 72 3 6 1523 1641 31 0 15 chr5 123023736 123023932 -29513327 + B2_Mm1t SINE B2 1 193 0 6 1523 218 305 45 45 chr5 123024194 123024328 -29512931 - L2b LINE L2 -214 3161 3028 6 1523 645 202 8 24 chr5 123024615 123024742 -29512517 - B1_Mur2 SINE Alu -7 142 18 6 1523 859 180 0 0 chr5 123024961 123025111 -29512148 + B1_Mur4 SINE Alu 1 150 0 7 1523 261 329 12 68 chr5 123024971 123025134 -29512125 + B4A SINE B4 95 248 -44 7 1523 272 273 0 43 chr5 123025131 123025223 -29512036 - RCHARR1 DNA MER1_type -231 743 656 7 1523 719 138 96 37 chr5 123025258 123025393 -29511866 - B1_Mus2 SINE Alu 0 147 5 7 1523 1192 182 9 5 chr5 123025419 123025629 -29511630 - B3 SINE B2 -5 211 1 7 1523 1510 238 20 86 chr5 123025635 123025967 -29511292 - RCHARR1 DNA MER1_type -311 663 354 7 1523 753 122 137 0 chr5 123025967 123026098 -29511161 - B1_Mur4 SINE Alu -1 149 1 7 1523 1510 238 20 86 chr5 123026098 123026252 -29511007 - RCHARR1 DNA MER1_type -621 353 209 7 1523 1096 29 34 11 chr5 123026272 123026447 -29510812 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1523 399 262 9 28 chr5 123026557 123026663 -29510596 - PB1D10 SINE Alu -7 110 7 7 1523 307 236 215 54 chr5 123026663 123026687 -29510572 - ID_B1 SINE B4 -7 217 67 7 1523 227 132 0 36 chr5 123026704 123026759 -29510500 + (CAGA)n Simple_repeat Simple_repeat 4 56 0 7 1523 219 188 0 0 chr5 123026756 123026804 -29510455 + G-rich Low_complexity Low_complexity 1 48 0 8 1523 420 181 60 0 chr5 123026813 123026896 -29510363 - PB1D10 SINE Alu -29 88 1 8 1523 410 179 156 10 chr5 123027558 123027654 -29509605 - PB1D10 SINE Alu -1 116 7 8 1523 21 0 0 0 chr5 123027757 123027778 -29509481 + AT_rich Low_complexity Low_complexity 1 21 0 8 1523 236 175 0 0 chr5 123027942 123027982 -29509277 - Charlie1b DNA MER1_type 0 523 484 8 1523 451 247 0 0 chr5 123027988 123028081 -29509178 - PB1D10 SINE Alu -23 94 2 8 1523 300 247 49 0 chr5 123028085 123028166 -29509093 - Charlie1b DNA MER1_type -40 483 399 8 1523 366 315 0 0 chr5 123028719 123028808 -29508451 + B1F1 SINE Alu 4 92 -57 8 1523 204 97 0 0 chr5 123028818 123028849 -29508410 + (CAAAG)n Simple_repeat Simple_repeat 5 35 0 8 1523 324 315 44 18 chr5 123028853 123028937 -29508322 + ID_B1 SINE B4 6 92 -132 8 1523 632 143 0 0 chr5 123028937 123029042 -29508217 + ORR1C2 LTR MaLR 1 105 -279 8 1523 807 12 31 105 chr5 123029050 123029241 -29508018 + (GGGAA)n Simple_repeat Simple_repeat 4 180 0 9 1523 675 159 106 0 chr5 123029247 123029379 -29507880 + B1_Mm SINE Alu 2 147 0 9 1523 809 206 120 0 chr5 123029387 123029571 -29507688 - B3 SINE B2 -10 206 1 9 1523 21 0 0 0 chr5 123030100 123030121 -29507138 + GC_rich Low_complexity Low_complexity 1 21 0 9 1523 3956 154 79 70 chr5 123030809 123031691 -29505568 + RMER19B LTR ERVK 1 890 -12 9 1523 862 159 20 33 chr5 123032055 123032205 -29505054 - B1_Mur2 SINE Alu 0 149 2 9 1523 930 111 14 0 chr5 123032280 123032424 -29504835 + B1_Mus1 SINE Alu 3 148 0 9 1523 539 272 177 0 chr5 123032520 123032678 -29504581 + B3 SINE B2 1 186 -30 9 1523 515 256 8 0 chr5 123033168 123033297 -29503962 + RSINE1 SINE B4 30 159 -6 9 1523 237 278 44 11 chr5 123033444 123033535 -29503724 - B4A SINE B4 -196 96 3 9 1523 537 261 0 8 chr5 123033553 123033673 -29503586 - B3 SINE B2 -58 158 40 1 1523 213 39 0 0 chr5 123033722 123033748 -29503511 + (CAT)n Simple_repeat Simple_repeat 2 27 0 1 1523 387 0 0 0 chr5 123033753 123033796 -29503463 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1523 639 207 103 32 chr5 123033800 123033955 -29503304 - B3A SINE B2 -30 168 3 1 1523 189 0 0 0 chr5 123036303 123036324 -29500935 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1 1523 434 214 12 0 chr5 123036337 123036421 -29500838 + B1_Mur1 SINE Alu 50 134 -15 1 1523 976 150 118 10 chr5 123036956 123037151 -29500108 - B3 SINE B2 0 216 1 1 1523 1098 88 0 0 chr5 123037336 123037473 -29499786 - B1_Mus1 SINE Alu -9 139 3 1 1523 682 199 149 28 chr5 123038106 123038287 -29498972 + B3 SINE B2 4 206 -10 1 1523 198 0 0 0 chr5 123038435 123038457 -29498802 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1 1523 214 269 90 0 chr5 123038975 123039042 -29498217 - MIRb SINE MIR -103 165 93 1 1523 605 143 0 59 chr5 123039202 123039321 -29497938 - B1F SINE Alu -26 123 12 1 1523 256 364 123 31 chr5 123039505 123039766 -29497493 - L3 LINE CR1 -1190 3299 3015 1 1523 604 244 74 53 chr5 123040667 123040857 -29496402 + B3A SINE B2 1 194 -4 1 1523 669 174 96 67 chr5 123041723 123041932 -29495327 - B3 SINE B2 0 216 2 1 1523 180 0 0 0 chr5 123041944 123041964 -29495295 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1523 712 255 38 0 chr5 123041969 123042126 -29495133 - B3A SINE B2 -32 166 4 1 1523 1625 32 0 0 chr5 123042164 123042351 -29494908 + B2_Mm1a SINE B2 1 187 -6 1 1523 525 32 0 0 chr5 123042464 123042527 -29494732 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1 1523 699 148 86 29 chr5 123042552 123042691 -29494568 - B1_Mur2 SINE Alu -1 148 2 1 1523 384 274 26 9 chr5 123043197 123043311 -29493948 + PB1D10 SINE Alu 1 116 -1 1 1523 24 0 0 0 chr5 123043493 123043517 -29493742 + AT_rich Low_complexity Low_complexity 1 24 0 1 1523 1160 62 7 0 chr5 123044054 123044199 -29493060 - B1_Mus1 SINE Alu -2 146 1 1 1523 882 94 0 0 chr5 123045155 123045282 -29491977 - B1_Mur4 SINE Alu -6 144 18 1 1523 326 178 70 122 chr5 123045184 123045299 -29491960 - MT2B LTR ERVL -337 264 156 1 1523 24 67 0 0 chr5 123045441 123045486 -29491773 + AT_rich Low_complexity Low_complexity 1 45 0 1 1523 746 165 235 0 chr5 123046012 123046182 -29491077 - B3 SINE B2 -5 211 2 1 1523 1280 14 0 0 chr5 123046212 123046357 -29490902 + B1_Mus2 SINE Alu 2 146 -1 1 1523 2350 168 103 32 chr5 123046739 123046920 -29490339 + RMER15 LTR ERVL 1 177 -398 1 1523 1234 211 168 141 chr5 123046920 123047439 -29489820 + MT2A LTR ERVL 1 533 0 1 1523 2350 168 103 32 chr5 123047439 123047793 -29489466 + RMER15 LTR ERVL 178 574 -1 1 1523 198 209 0 0 chr5 123048135 123048178 -29489081 + T-rich Low_complexity Low_complexity 1 43 0 1 1523 990 195 26 71 chr5 123048182 123048408 -29488851 - B3 SINE B2 0 216 1 1 1523 516 284 78 9 chr5 123048415 123048632 -29488627 - L1MB7 LINE L1 0 6178 5947 1 1523 943 72 28 0 chr5 123048674 123048826 -29488433 - B2_Mm2 SINE B2 -46 170 2 1 1523 873 225 142 11 chr5 123048836 123049097 -29488162 - L1MB7 LINE L1 -255 5929 5635 1 1523 1065 107 6 17 chr5 123049097 123049259 -29488000 + B2_Mm2 SINE B2 1 160 -35 1 1523 186 43 0 0 chr5 123049259 123049282 -29487977 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 1 1523 444 295 11 128 chr5 123049317 123049496 -29487763 + RSINE1 SINE B4 2 159 -6 1 1523 504 280 30 0 chr5 123049520 123049688 -29487571 - L1MB7 LINE L1 -552 5632 5460 1 1523 929 98 14 14 chr5 123049984 123050129 -29487130 - B1_Mur4 SINE Alu 0 150 6 1 1523 302 279 53 120 chr5 123050696 123050732 -29486527 - B2_Mm2 SINE B2 -1 194 162 1 1523 180 77 0 0 chr5 123050732 123050758 -29486501 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1523 657 240 60 21 chr5 123050758 123050929 -29486330 - B3A SINE B2 -25 173 1 1 1523 691 181 37 8 chr5 123051015 123051149 -29486110 + B1_Mur2 SINE Alu 11 148 -1 1 1523 252 236 81 27 chr5 123051812 123051886 -29485373 + ID4_ SINE ID 5 82 -1 1 1523 305 286 0 0 chr5 123051924 123051994 -29485265 + ID4 SINE ID 3 72 -11 1 1523 723 135 0 0 chr5 123051997 123052130 -29485129 + (CA)n Simple_repeat Simple_repeat 1 133 0 1 1523 751 190 14 21 chr5 123053210 123053355 -29483904 - B1_Mur2 SINE Alu 0 149 6 1 1523 1064 97 0 14 chr5 123053394 123053541 -29483718 - B1_Mm SINE Alu -2 145 1 1 1523 1048 53 30 0 chr5 123053568 123053699 -29483560 - B1_Mus2 SINE Alu -11 136 2 1 1523 793 182 14 0 chr5 123053737 123053880 -29483379 + B1_Mur4 SINE Alu 6 150 0 1 1523 21 0 0 0 chr5 123053949 123053970 -29483289 + AT_rich Low_complexity Low_complexity 1 21 0 1 1523 210 71 0 0 chr5 123054052 123054080 -29483179 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 1 1523 392 259 0 0 chr5 123054266 123054347 -29482912 + RSINE1 SINE B4 4 84 -81 1 1523 264 30 0 0 chr5 123054348 123054381 -29482878 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1523 231 61 0 0 chr5 123054390 123054423 -29482836 - B1_Mur4 SINE Alu -6 144 112 1 1523 1196 54 0 0 chr5 123054439 123054586 -29482673 + B1_Mm SINE Alu 1 147 0 1 1523 309 117 0 0 chr5 123054586 123054646 -29482613 + (A)n Simple_repeat Simple_repeat 1 60 0 1 1523 1353 95 16 10 chr5 123054680 123054872 -29482387 - B2_Mm2 SINE B2 -2 193 1 1 1523 468 322 78 22 chr5 123055338 123055570 -29481689 - L2b LINE L2 -8 3367 3123 1 1523 726 223 84 0 chr5 123055958 123056124 -29481135 + B3A SINE B2 1 180 -18 1 1523 773 264 79 21 chr5 123056172 123056412 -29480847 + B4A SINE B4 1 254 -38 1 1523 665 297 88 10 chr5 123056627 123056821 -29480438 + B4A SINE B4 83 291 -1 1 1523 388 275 29 29 chr5 123057187 123057292 -29479967 + PB1D10 SINE Alu 13 117 0 1 1523 227 336 7 88 chr5 123057574 123057711 -29479548 + L2c LINE L2 3261 3386 -1 1 1523 304 264 40 40 chr5 123057759 123057834 -29479425 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 1 1523 239 326 29 91 chr5 123058392 123058573 -29478686 - L2c LINE L2 -32 3355 3210 1 1523 643 231 122 24 chr5 123059630 123059831 -29477428 - B3A SINE B2 0 216 9 1 1523 538 238 87 13 chr5 123060521 123060670 -29476589 + RSINE1 SINE B4 2 161 -4 1 1523 286 321 76 81 chr5 123061459 123061669 -29475590 + MER102b DNA MER1_type 82 290 -51 1 1523 652 224 91 13 chr5 123062344 123062498 -29474761 + B3 SINE B2 48 213 -3 1 1523 28 0 0 0 chr5 123062505 123062533 -29474726 + AT_rich Low_complexity Low_complexity 1 28 0 1 1523 819 191 78 34 chr5 123062601 123062807 -29474452 + ID_B1 SINE B4 2 216 -8 1 1523 330 268 51 0 chr5 123062835 123062942 -29474317 + PB1D10 SINE Alu 3 125 -2 1 1523 276 30 0 0 chr5 123063079 123063112 -29474147 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1523 470 234 36 27 chr5 123063113 123063223 -29474036 - PB1D9 SINE Alu -8 112 2 1 1523 263 68 0 64 chr5 123063275 123063322 -29473937 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 1 1523 827 179 14 0 chr5 123063415 123063555 -29473704 + B1_Mus2 SINE Alu 4 145 -2 1 1523 210 240 0 0 chr5 123065703 123065753 -29471506 + CT-rich Low_complexity Low_complexity 3 52 0 1 1523 232 200 0 0 chr5 123065769 123065809 -29471450 - ID4_ SINE ID -41 42 3 1 1523 1128 210 129 25 chr5 123065818 123066096 -29471163 + MTD LTR MaLR 113 419 0 1 1523 895 234 32 37 chr5 123066353 123066570 -29470689 - B3 SINE B2 0 216 1 1 1523 1034 98 0 20 chr5 123066639 123066785 -29470474 + B1_Mus1 SINE Alu 1 143 -5 1 1523 468 51 0 0 chr5 123066785 123066844 -29470415 + (GGA)n Simple_repeat Simple_repeat 3 61 0 1 1523 240 221 115 104 chr5 123066855 123066951 -29470308 - PB1 SINE Alu -19 108 12 1 1523 209 33 0 32 chr5 123066958 123066989 -29470270 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 1 1523 364 229 0 14 chr5 123066989 123067060 -29470199 - B1F SINE Alu -13 136 67 1 1523 782 214 149 0 chr5 123067273 123067441 -29469818 + ID_B1 SINE B4 4 196 -28 1 1523 620 211 9 0 chr5 123067459 123067573 -29469686 + RSINE1 SINE B4 15 129 -36 1 1523 284 343 68 62 chr5 123068743 123068920 -29468339 + MamGypLTR1a LTR Gypsy 355 532 -252 1 1523 524 323 93 68 chr5 123069287 123069566 -29467693 - B4A SINE B4 0 292 7 1 1523 303 326 143 0 chr5 123069568 123069666 -29467593 - PB1D10 SINE Alu -5 112 1 1 1523 387 0 0 0 chr5 123069777 123069820 -29467439 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1523 590 257 170 69 chr5 123070255 123070447 -29466812 + B4A SINE B4 1 229 -63 1 1523 864 133 14 22 chr5 123070447 123070585 -29466674 + B1_Mus1 SINE Alu 2 138 -10 1 1523 590 257 170 69 chr5 123070585 123070639 -29466620 + B4A SINE B4 230 272 -20 1 1523 332 244 23 0 chr5 123070694 123070780 -29466479 + L1MB8 LINE L1 5822 5909 -269 1 1523 210 328 29 15 chr5 123070823 123070891 -29466368 + L2b LINE L2 3289 3357 -18 1 1523 278 253 65 65 chr5 123070988 123071081 -29466178 - L2a LINE L2 -29 3397 3305 1 1523 252 167 0 0 chr5 123071656 123071704 -29465555 + GA-rich Low_complexity Low_complexity 1 48 0 1 1523 309 109 0 0 chr5 123071868 123071914 -29465345 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1523 2007 136 29 27 chr5 123072114 123072563 -29464696 - RMER17C LTR ERVK -519 439 16 1 1523 198 0 0 0 chr5 123072575 123072597 -29464662 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 1 1523 250 378 86 38 chr5 123072873 123073082 -29464177 - MER20 DNA MER1_type 0 219 1 1 1523 592 207 267 8 chr5 123073373 123073594 -29463665 - ORR1E LTR MaLR -2 377 75 2 1523 229 292 45 15 chr5 123073938 123073978 -29463281 + ORR1B1-int LTR MaLR 604 647 -862 2 1523 744 96 8 1 chr5 123073978 123074087 -29463172 + B1_Mus1 SINE Alu 2 118 -2 2 1523 329 294 86 22 chr5 123074582 123074721 -29462538 - RSINE1 SINE B4 -15 150 3 2 1523 416 278 32 4 chr5 123074764 123074879 -29462380 + PB1D10 SINE Alu 1 122 -5 2 1523 591 259 27 13 chr5 123074919 123075068 -29462191 - ID_B1 SINE B4 -73 151 1 2 1523 241 314 135 82 chr5 123075098 123075268 -29461991 - MLT1K LTR MaLR -229 366 188 2 1523 333 281 32 35 chr5 123075968 123076094 -29461165 + MLT1L LTR MaLR 98 245 -365 2 190 551 267 92 58 chr5 123076507 123076714 -29460545 + B3A SINE B2 1 214 -2 2 1524 777 210 66 61 chr5 123076714 123076927 -29460332 + B3A SINE B2 3 216 0 2 1524 203 216 5 9 chr5 123077044 123077093 -29460166 + MIR SINE MIR 116 169 -107 2 1524 672 143 0 0 chr5 123077625 123077751 -29459508 + (TC)n Simple_repeat Simple_repeat 1 126 0 2 1524 482 326 55 72 chr5 123077761 123077996 -29459263 + MTE2b LTR MaLR 1 231 -148 2 1524 1242 65 24 0 chr5 123077983 123078152 -29459107 - B2_Mm2 SINE B2 -10 185 13 2 1524 542 267 6 68 chr5 123078149 123078256 -29459003 + MTE2b LTR MaLR 195 297 -82 2 1524 6593 109 12 26 chr5 123078256 123079224 -29458035 - RMER17B LTR ERVK -3 955 1 2 1524 542 267 6 68 chr5 123079224 123079277 -29457982 + MTE2b LTR MaLR 298 345 -34 2 1524 320 281 82 10 chr5 123079415 123079512 -29457747 - MIRc SINE MIR -135 133 30 2 1524 371 367 7 52 chr5 123079587 123079703 -29457556 + RSINE1 SINE B4 17 126 -39 2 1524 237 33 0 0 chr5 123079703 123079733 -29457526 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1524 4498 129 76 97 chr5 123079736 123080657 -29456602 + RMER17A2 LTR ERVK 1 902 -4 2 1524 371 367 7 52 chr5 123080657 123080691 -29456568 + RSINE1 SINE B4 127 160 -5 2 1524 22 0 0 0 chr5 123080713 123080735 -29456524 + AT_rich Low_complexity Low_complexity 1 22 0 2 1524 281 258 0 0 chr5 123080736 123080798 -29456461 + B1_Mur2 SINE Alu 77 138 -11 2 1524 309 51 0 0 chr5 123080799 123080838 -29456421 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 2 1524 251 114 0 22 chr5 123081094 123081139 -29456120 - B3 SINE B2 -171 45 2 2 1524 933 148 136 0 chr5 123081249 123081418 -29455841 - ORR1C2 LTR MaLR -1 383 192 2 1524 216 0 0 0 chr5 123081418 123081442 -29455817 + (GA)n Simple_repeat Simple_repeat 1 24 0 2 1524 773 125 59 4 chr5 123081442 123081526 -29455733 - ORR1C2 LTR MaLR -190 184 171 2 1524 618 261 13 6 chr5 123081643 123081801 -29455458 + HAL1-2a_MD LINE L1 2349 2507 -517 2 1524 2598 83 0 0 chr5 123082171 123082497 -29454762 - ORR1A3 LTR MaLR 0 326 1 2 1524 420 20 0 0 chr5 123083084 123083133 -29454126 + (GA)n Simple_repeat Simple_repeat 2 50 0 2 1524 372 120 37 74 chr5 123083214 123083295 -29453964 + L1M3 LINE L1 5592 5669 -511 2 1524 451 271 96 15 chr5 123083295 123083430 -29453829 + B1F SINE Alu 1 146 -3 2 1524 361 316 31 0 chr5 123083430 123083527 -29453732 + PB1D7 SINE Alu 1 101 -19 2 1524 238 239 0 74 chr5 123083527 123083539 -29453720 + L1M1 LINE L1 5669 5678 -625 2 1524 245 220 0 0 chr5 123083717 123083767 -29453492 + L1MB3 LINE L1 6059 6108 -75 2 1524 261 0 0 0 chr5 123083775 123083804 -29453455 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2 1524 3080 29 0 6 chr5 123083818 123084166 -29453093 - ORR1A1 LTR MaLR 0 346 1 2 1524 501 17 0 0 chr5 123084167 123084225 -29453034 + (TA)n Simple_repeat Simple_repeat 2 59 0 2 1524 1207 81 0 0 chr5 123084278 123084426 -29452833 - B1_Mus1 SINE Alu 0 148 1 2 1524 1229 124 32 0 chr5 123084428 123084614 -29452645 - B2_Mm2 SINE B2 -2 193 2 2 1524 679 263 45 0 chr5 123084641 123084797 -29452462 + RSINE1 SINE B4 3 165 0 2 1524 568 283 0 40 chr5 123084818 123084969 -29452290 + ID_B1 SINE B4 78 222 -2 2 1524 689 221 14 20 chr5 123084974 123085122 -29452137 + B1_Mus2 SINE Alu 1 147 0 2 1524 243 318 114 15 chr5 123085705 123085719 -29451540 + B4A SINE B4 81 221 -68 2 1524 417 216 0 105 chr5 123085719 123085833 -29451426 + PB1D10 SINE Alu 10 111 -6 2 1524 845 101 8 23 chr5 123085852 123085984 -29451275 + B1_Mur4 SINE Alu 19 148 -2 2 1524 236 120 39 39 chr5 123086758 123086836 -29450423 + T-rich Low_complexity Low_complexity 3 80 0 2 1524 225 132 0 0 chr5 123086891 123086929 -29450330 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2 1524 261 164 210 16 chr5 123088460 123088522 -29448737 - LTR65 LTR ERV1 -546 123 50 2 1524 770 149 16 22 chr5 123088570 123088898 -29448361 + (CA)n Simple_repeat Simple_repeat 1 325 0 2 1524 791 73 18 9 chr5 123089098 123089208 -29448051 + B1_Mur3 SINE Alu 29 139 -10 2 1524 281 0 82 0 chr5 123089208 123089257 -29448002 + (CAA)n Simple_repeat Simple_repeat 2 54 0 2 1524 281 286 108 54 chr5 123089734 123089845 -29447414 + MER45R DNA Tip100 9 125 -1456 2 1524 22 0 0 0 chr5 123089902 123089924 -29447335 + AT_rich Low_complexity Low_complexity 1 22 0 2 1524 219 69 0 0 chr5 123089977 123090006 -29447253 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 2 1524 274 257 27 0 chr5 123090007 123090081 -29447178 - ID4 SINE ID -7 76 1 2 1524 779 265 29 43 chr5 123090110 123090319 -29446940 - B3A SINE B2 -6 210 5 2 1524 261 0 0 0 chr5 123090363 123090392 -29446867 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1524 307 328 16 101 chr5 123090412 123090541 -29446718 + MLT1I LTR MaLR 6 123 -288 2 1524 372 219 113 10 chr5 123090647 123090744 -29446515 + MLT1I LTR MaLR 303 409 -2 2 1524 1502 129 185 122 chr5 123091017 123091369 -29445890 + ORR1C1 LTR MaLR 5 378 0 2 1524 539 269 71 20 chr5 123091476 123091673 -29445586 - L1MB5 LINE L1 -225 5949 5743 2 1524 216 0 0 0 chr5 123091904 123091928 -29445331 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1524 407 172 184 0 chr5 123091970 123092057 -29445202 - RSINE1 SINE B4 -61 104 2 2 1524 1440 85 5 0 chr5 123092152 123092341 -29444918 + B2_Mm1a SINE B2 1 190 -3 2 1524 253 218 114 13 chr5 123092659 123092738 -29444521 + LTR65 LTR ERV1 240 326 -343 2 1524 488 288 14 35 chr5 123092876 123093020 -29444239 + ID_B1 SINE B4 84 224 0 2 1524 270 0 0 0 chr5 123093050 123093080 -29444179 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1524 375 298 124 0 chr5 123093091 123093252 -29444007 + LTR65 LTR ERV1 487 667 -2 2 1524 654 236 12 30 chr5 123093481 123093640 -29443619 + ID_B1 SINE B4 86 240 -52 2 1524 348 259 128 28 chr5 123094668 123094752 -29442507 - L1MB8 LINE L1 -43 6135 6048 2 1524 638 145 197 24 chr5 123094752 123094879 -29442380 + B1_Mur3 SINE Alu 1 149 0 2 1524 348 259 128 28 chr5 123094879 123094973 -29442286 - L1MB8 LINE L1 -131 6047 5940 2 1524 503 133 22 0 chr5 123094973 123095063 -29442196 + (TATG)n Simple_repeat Simple_repeat 2 93 0 2 1524 742 310 94 45 chr5 123095075 123095588 -29441671 - L1MB8 LINE L1 -245 5933 5396 2 1524 753 273 37 11 chr5 123095703 123095892 -29441367 - B4A SINE B4 -97 195 2 2 1524 257 191 0 0 chr5 123095927 123095974 -29441285 + MIRc SINE MIR 94 140 -128 2 1524 250 333 32 70 chr5 123096674 123096861 -29440398 - L2 LINE L2 -584 2835 2656 2 1524 838 166 34 14 chr5 123097079 123097226 -29440033 - B1_Mur4 SINE Alu 0 150 1 2 1524 369 0 0 0 chr5 123097690 123097731 -29439528 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1524 196 243 35 139 chr5 123098603 123098689 -29438570 - MIR SINE MIR -167 101 25 2 1524 291 309 148 59 chr5 123098962 123099187 -29438072 - L2 LINE L2 -1078 2341 2117 2 1524 1112 106 0 6 chr5 123099187 123099358 -29437901 + (GAA)n Simple_repeat Simple_repeat 3 172 0 2 1524 291 309 148 59 chr5 123099358 123099692 -29437567 - L2 LINE L2 -1303 2116 1732 2 1524 296 301 65 93 chr5 123099848 123099944 -29437315 + MT2B2 LTR ERVL 69 158 -426 2 1524 604 145 58 33 chr5 123099944 123100065 -29437194 + B1_Mur3 SINE Alu 2 125 -24 2 1524 1165 42 7 40 chr5 123100966 123101116 -29436143 + B1_Mus2 SINE Alu 3 147 0 2 1524 561 307 0 26 chr5 123101610 123101764 -29435495 - RSINE1 SINE B4 -13 152 3 2 1524 432 304 99 0 chr5 123102099 123102280 -29434979 - L1MB5 LINE L1 -60 6114 5916 2 1524 449 211 0 10 chr5 123102280 123102393 -29434866 + PB1D9 SINE Alu 5 114 -35 2 1524 252 0 0 0 chr5 123102409 123102437 -29434822 + (GA)n Simple_repeat Simple_repeat 1 28 0 2 1524 23 0 0 0 chr5 123102970 123102993 -29434266 + AT_rich Low_complexity Low_complexity 1 23 0 2 1524 625 210 331 12 chr5 123103001 123103170 -29434089 + ID_B1 SINE B4 1 223 -1 2 1524 210 57 86 0 chr5 123105240 123105275 -29431984 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 1524 249 33 0 0 chr5 123105359 123105389 -29431870 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 2 1524 191 273 71 18 chr5 123105663 123105719 -29431540 - MIR SINE MIR -61 147 89 2 1524 609 265 35 130 chr5 123106263 123106551 -29430708 - L1MB7 LINE L1 -119 6061 5810 2 1524 1171 247 22 4 chr5 123106551 123106819 -29430440 + B4A SINE B4 1 273 -19 2 1524 609 281 33 82 chr5 123106819 123106839 -29430420 - L1MB7 LINE L1 -375 5809 5801 2 1524 261 0 0 0 chr5 123106839 123106868 -29430391 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1524 609 281 33 82 chr5 123106868 123106966 -29430293 - L1MB7 LINE L1 -384 5800 5699 2 1524 206 231 15 0 chr5 123107417 123107482 -29429777 + CT-rich Low_complexity Low_complexity 2 67 0 2 1524 341 238 0 0 chr5 123107492 123107555 -29429704 - ID4_ SINE ID -18 65 3 2 1524 381 171 131 235 chr5 123107592 123107745 -29429514 + B1_Mur1 SINE Alu 5 141 -8 2 1524 1357 85 37 5 chr5 123107933 123108122 -29429137 - B2_Mm2 SINE B2 0 195 1 2 1524 216 0 0 0 chr5 123108244 123108268 -29428991 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1524 342 67 0 0 chr5 123108325 123108370 -29428889 + (T)n Simple_repeat Simple_repeat 1 45 0 2 1524 1214 54 0 0 chr5 123108370 123108517 -29428742 - B1_Mus1 SINE Alu 0 148 2 2 1524 338 289 103 28 chr5 123108932 123109039 -29428220 - RMER20B LTR ERVK -20 607 493 2 1524 1337 74 36 26 chr5 123109181 123109374 -29427885 + B2_Mm2 SINE B2 1 195 0 2 1524 686 249 127 35 chr5 123109494 123109723 -29427536 - RMER20B LTR ERVK -142 485 236 2 1524 830 161 74 0 chr5 123110129 123110291 -29426968 + B4A SINE B4 104 277 -15 3 1524 270 0 0 0 chr5 123110332 123110362 -29426897 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1524 527 243 39 98 chr5 123110389 123110554 -29426705 + MER3 DNA MER1_type 1 158 -51 3 1524 672 277 13 6 chr5 123110554 123110710 -29426549 - RSINE1 SINE B4 -6 159 3 3 1524 527 243 39 98 chr5 123110710 123110749 -29426510 + MER3 DNA MER1_type 159 193 -16 3 1524 816 152 53 8 chr5 123111122 123111255 -29426004 - B1_Mur1 SINE Alu -7 142 4 3 1524 240 35 0 0 chr5 123111262 123111291 -29425968 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 3 1524 468 250 18 36 chr5 123111292 123111404 -29425855 - PB1D10 SINE Alu -2 115 6 3 1524 294 279 219 8 chr5 123111295 123111418 -29425841 - B4A SINE B4 -68 224 76 3 1524 211 28 56 0 chr5 123111574 123111610 -29425649 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 3 1524 2898 257 81 93 chr5 123111772 123112916 -29424343 - Lx8 LINE L1 -8 7465 6335 3 1524 252 0 0 0 chr5 123112997 123113025 -29424234 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 3 1524 282 306 26 51 chr5 123113235 123113352 -29423907 + MER63B DNA AcHobo 321 434 -2 3 1524 726 305 171 59 chr5 123113695 123114099 -29423160 - MLT1F LTR MaLR -7 541 93 3 1524 275 49 0 24 chr5 123114113 123114155 -29423104 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3 1524 1158 81 0 0 chr5 123114160 123114308 -29422951 - B1_Mus1 SINE Alu 0 148 1 3 1524 450 307 16 0 chr5 123114398 123114525 -29422734 + MER63B DNA AcHobo 288 416 -20 3 1524 554 297 38 61 chr5 123114888 123114954 -29422305 - MLT1D LTR MaLR 0 505 439 3 1524 1353 86 5 21 chr5 123114954 123115145 -29422114 + B2_Mm2 SINE B2 1 188 -7 3 1524 554 280 33 45 chr5 123115145 123115349 -29421910 - MLT1D LTR MaLR -67 438 250 3 1524 180 0 0 0 chr5 123115387 123115407 -29421852 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3 1524 747 118 0 25 chr5 123115430 123115552 -29421707 - B1_Mus1 SINE Alu -22 126 8 3 1524 319 258 140 0 chr5 123115565 123115658 -29421601 - PB1D10 SINE Alu 0 117 12 3 1524 252 0 0 0 chr5 123115690 123115718 -29421541 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1524 193 355 36 18 chr5 123116312 123116424 -29420835 - L2a LINE L2 -62 3364 3251 3 1524 475 293 8 8 chr5 123116478 123116602 -29420657 + RSINE1 SINE B4 1 124 -41 3 1524 348 83 0 0 chr5 123116602 123116650 -29420609 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1524 973 180 102 15 chr5 123116745 123116910 -29420349 + B3 SINE B2 1 165 -51 3 1524 279 71 0 0 chr5 123116910 123116952 -29420307 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 3 1524 973 180 102 15 chr5 123116952 123116983 -29420276 + B3 SINE B2 166 213 -3 3 1524 350 282 53 68 chr5 123117090 123117280 -29419979 + L1ME3 LINE L1 5762 5948 -214 3 1524 425 275 68 27 chr5 123117281 123117427 -29419832 + RSINE1 SINE B4 7 158 -7 3 1524 483 18 0 0 chr5 123117448 123117504 -29419755 + (TC)n Simple_repeat Simple_repeat 1 56 0 3 1524 776 207 7 14 chr5 123117660 123117807 -29419452 + B1_Mur1 SINE Alu 2 147 -2 3 1524 221 279 23 23 chr5 123117889 123117977 -29419282 - L2a LINE L2 -138 3288 3201 3 1524 185 324 78 52 chr5 123118136 123118289 -29418970 + MER5A DNA MER1_type 33 189 0 3 1524 269 297 51 66 chr5 123118567 123118704 -29418555 + MER102c DNA MER1_type 144 278 -53 3 1524 1206 263 11 19 chr5 123119295 123119566 -29417693 + B4A SINE B4 1 269 -23 3 1524 414 0 0 0 chr5 123119566 123119612 -29417647 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1524 583 252 187 108 chr5 123119729 123120156 -29417103 - MLT1C LTR MaLR -2 465 5 3 1524 260 284 146 10 chr5 123120748 123120851 -29416408 - PB1D10 SINE Alu 0 117 1 3 1524 577 203 245 40 chr5 123120883 123121119 -29416140 + B4A SINE B4 2 277 -15 3 1524 926 63 8 0 chr5 123121180 123121306 -29415953 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 3 1524 478 274 86 0 chr5 123121334 123121451 -29415808 + ID_B1 SINE B4 44 170 -54 3 1524 436 248 39 10 chr5 123121374 123121476 -29415783 + PB1D10 SINE Alu 13 117 0 3 1524 387 258 31 31 chr5 123121515 123121640 -29415619 + B3 SINE B2 2 133 -62 3 1524 1112 61 0 39 chr5 123121642 123121795 -29415464 - B1_Mus2 SINE Alu 0 147 1 3 1524 716 193 37 7 chr5 123121796 123121932 -29415327 + B3 SINE B2 77 216 0 3 1524 1430 75 16 0 chr5 123121945 123122132 -29415127 + B2_Mm1a SINE B2 1 190 -3 3 1524 249 33 0 0 chr5 123122155 123122185 -29415074 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 3 1524 641 336 102 75 chr5 123122204 123122751 -29414508 - MLT1K LTR MaLR -29 566 5 3 1524 691 204 7 45 chr5 123122814 123122968 -29414291 + B1_Mur1 SINE Alu 1 148 -1 3 1524 412 208 13 69 chr5 123123494 123123604 -29413655 + PB1D9 SINE Alu 35 149 0 3 1524 218 319 54 27 chr5 123124240 123124314 -29412945 + ID4 SINE ID 4 79 -4 3 1524 219 69 0 0 chr5 123124457 123124486 -29412773 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1524 212 207 65 65 chr5 123124501 123124563 -29412696 + PB1D10 SINE Alu 10 71 -46 3 1524 315 256 44 117 chr5 123124546 123124582 -29412677 + MT2B2 LTR ERVL 128 251 -330 3 1524 571 224 0 0 chr5 123124582 123124680 -29412579 + B1F SINE Alu 1 98 -51 3 1524 600 14 0 0 chr5 123124684 123124753 -29412506 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1524 303 28 0 0 chr5 123124753 123124788 -29412471 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 1524 360 0 0 0 chr5 123124788 123124827 -29412432 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1524 305 327 28 28 chr5 123124829 123124936 -29412323 - MIR SINE MIR -151 111 5 3 1524 1210 43 0 0 chr5 123125039 123125180 -29412079 + B1_Mus1 SINE Alu 2 142 -6 3 1524 773 95 9 0 chr5 123125182 123125298 -29411961 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 3 1524 211 319 42 11 chr5 123125674 123125769 -29411490 + B1F1 SINE Alu 1 98 -51 3 1524 1012 118 15 0 chr5 123125794 123125930 -29411329 + B1_Mur4 SINE Alu 1 138 -12 3 1524 545 14 29 0 chr5 123125930 123125999 -29411260 + (TAAAA)n Simple_repeat Simple_repeat 2 72 0 3 1524 308 250 28 19 chr5 123126000 123126106 -29411153 + GA-rich Low_complexity Low_complexity 3 109 0 3 1524 441 0 0 0 chr5 123126275 123126324 -29410935 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1524 1737 21 0 0 chr5 123126448 123126641 -29410618 - B2_Mm1t SINE B2 0 193 1 3 1524 251 209 30 0 chr5 123126846 123126913 -29410346 - L1ME3A LINE L1 -55 6118 6050 3 1524 676 245 7 0 chr5 123126926 123127065 -29410194 + RSINE1 SINE B4 2 141 -24 3 1524 405 70 0 0 chr5 123127066 123127123 -29410136 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1524 261 0 0 0 chr5 123127216 123127245 -29410014 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 3 1524 778 102 0 0 chr5 123127245 123127353 -29409906 - B1_Mus2 SINE Alu -13 134 27 3 1524 520 212 169 0 chr5 123127492 123127610 -29409649 - B1_Mur1 SINE Alu -6 143 6 3 1524 376 323 16 0 chr5 123127658 123127782 -29409477 + PB1 SINE Alu 1 126 -1 3 1524 234 282 47 0 chr5 123127880 123127965 -29409294 - L1ME3A LINE L1 -351 5822 5734 3 1524 333 338 46 26 chr5 123128173 123128325 -29408934 - MLT1C LTR MaLR -2 465 311 3 1524 1534 58 11 0 chr5 123128463 123128653 -29408606 - B2_Mm1t SINE B2 0 193 2 3 1524 394 273 29 27 chr5 123128656 123128835 -29408424 - L1ME3A LINE L1 -2124 4016 3835 3 1524 252 362 0 0 chr5 123128842 123128911 -29408348 - ID4 SINE ID -7 76 8 3 1524 833 241 114 34 chr5 123129032 123129268 -29407991 - B4A SINE B4 0 292 38 3 1524 329 295 122 8 chr5 123129431 123129453 -29407806 + B1F SINE Alu 1 137 -12 3 1524 383 267 79 0 chr5 123129453 123129554 -29407705 + ID_B1 SINE B4 104 212 -12 3 1524 817 312 78 41 chr5 123129570 123130008 -29407251 - L1MB5 LINE L1 -35 6139 5686 3 1524 198 0 0 0 chr5 123130338 123130360 -29406899 + (T)n Simple_repeat Simple_repeat 1 22 0 3 1524 1123 49 28 0 chr5 123130360 123130504 -29406755 - B1_Mus1 SINE Alu 0 148 1 3 1524 259 297 118 25 chr5 123131705 123131948 -29405311 + MLT1G LTR MaLR 3 273 -318 3 1524 243 279 0 47 chr5 123132097 123132161 -29405098 + MLT1G LTR MaLR 519 579 0 3 1524 247 108 0 0 chr5 123132469 123132506 -29404753 + PB1D10 SINE Alu 68 104 -13 3 1524 1062 180 82 0 chr5 123132527 123132721 -29404538 - B3 SINE B2 -6 210 1 3 1524 300 271 20 50 chr5 123132774 123132875 -29404384 + B4A SINE B4 1 98 -194 3 1524 252 259 281 18 chr5 123132903 123133017 -29404242 + RSINE1 SINE B4 22 165 0 3 1524 324 177 32 0 chr5 123133418 123133480 -29403779 + RSINE1 SINE B4 45 108 -57 3 1524 764 82 76 76 chr5 123133562 123133707 -29403552 - B1_Mm SINE Alu 0 147 3 3 1524 196 281 0 34 chr5 123134566 123134625 -29402634 - L2c LINE L2 -286 3101 3045 3 1524 416 280 77 39 chr5 123134673 123134855 -29402404 + MT2B LTR ERVL 90 278 -323 3 1524 550 189 71 0 chr5 123134750 123134877 -29402382 + B1_Mur1 SINE Alu 11 146 -3 3 1524 207 0 0 0 chr5 123134974 123134997 -29402262 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1524 1146 49 0 0 chr5 123135041 123135183 -29402076 + B1_Mus2 SINE Alu 6 147 0 3 1524 309 109 0 0 chr5 123135183 123135229 -29402030 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 3 1524 896 245 12 55 chr5 123135563 123135818 -29401441 + MTD LTR MaLR 18 261 -158 3 1524 309 134 6 23 chr5 123135846 123135906 -29401353 + MTD LTR MaLR 319 405 -14 3 1524 483 239 9 44 chr5 123135954 123136068 -29401191 + LTR53 LTR ERVL 340 449 -70 3 1524 339 327 20 0 chr5 123136485 123136586 -29400673 + PB1D10 SINE Alu 10 112 -5 3 1524 334 314 77 51 chr5 123136598 123136793 -29400466 + B4A SINE B4 93 292 0 3 1524 281 247 0 49 chr5 123136880 123136961 -29400298 + ID4_ SINE ID 2 78 -5 3 1524 821 168 26 78 chr5 123137004 123137232 -29400027 - ORR1B1 LTR MaLR -156 211 1 3 1524 5807 122 42 67 chr5 123137232 123138248 -29399011 - ORR1B1-int LTR MaLR 0 1792 851 3 1524 1235 48 7 0 chr5 123138248 123138395 -29398864 - B1_Mus1 SINE Alu 0 148 1 4 1524 5807 109 43 50 chr5 123138395 123138637 -29398622 - ORR1B1-int LTR MaLR -937 1026 795 3 1524 270 188 0 72 chr5 123138640 123138709 -29398550 - ORR1A4 LTR MaLR -263 66 3 4 1524 225 236 36 18 chr5 123138720 123138776 -29398483 + PB1D9 SINE Alu 62 118 -2 4 1524 620 257 192 40 chr5 123138818 123139094 -29398165 + MT2C_Mm LTR ERVL 1 318 -157 4 1524 594 279 82 19 chr5 123139487 123139743 -29397516 - B4A SINE B4 -20 272 1 4 1524 317 238 64 37 chr5 123139739 123139751 -29397508 - ID_B1 SINE B4 -41 183 76 4 1524 428 228 0 11 chr5 123139751 123139844 -29397415 - PB1D10 SINE Alu -24 93 2 4 1524 229 295 167 35 chr5 123139884 123140028 -29397231 + L1M3 LINE L1 5577 5739 -441 4 1524 42 20 0 0 chr5 123140068 123140117 -29397142 + AT_rich Low_complexity Low_complexity 1 49 0 4 1524 533 152 0 9 chr5 123140148 123140255 -29397004 - B1F SINE Alu -5 144 42 4 1524 232 324 0 14 chr5 123140269 123140341 -29396918 + CT-rich Low_complexity Low_complexity 1 71 0 4 1524 611 98 435 16 chr5 123140942 123141066 -29396193 + B2_Mm1t SINE B2 2 177 -16 4 1524 980 184 71 5 chr5 123141249 123141446 -29395813 - B3 SINE B2 -4 212 3 4 1524 788 227 0 136 chr5 123141465 123141715 -29395544 - B3 SINE B2 0 216 1 4 1524 567 250 30 53 chr5 123141755 123141924 -29395335 - RSINE1 SINE B4 0 165 1 4 1524 1959 176 38 27 chr5 123142410 123142790 -29394469 - ORR1B1 LTR MaLR -1 378 9 4 1524 303 292 0 0 chr5 123142796 123142868 -29394391 - B1F SINE Alu -24 125 54 4 1524 288 0 0 0 chr5 123143053 123143085 -29394174 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1524 282 294 74 34 chr5 123143445 123143593 -29393666 + L2a LINE L2 3270 3423 -3 4 1524 1121 276 57 34 chr5 123143870 123144309 -29392950 + L1MB5 LINE L1 5599 6047 -127 4 1524 610 233 0 25 chr5 123144313 123144432 -29392827 + PB1D10 SINE Alu 2 117 0 4 1524 8091 48 1 4 chr5 123144459 123145443 -29391816 + L1Md_F2 LINE L1 5601 6581 -1 4 1524 1041 264 131 45 chr5 123145472 123145869 -29391390 - RCHARR1 DNA MER1_type -540 434 4 4 1524 1195 65 112 6 chr5 123146029 123146198 -29391061 - B2_Mm2 SINE B2 -8 187 1 4 1524 1128 89 14 0 chr5 123146235 123146381 -29390878 + B1_Mus1 SINE Alu 1 148 0 4 1524 356 286 0 0 chr5 123147043 123147120 -29390139 + B1F1 SINE Alu 20 96 -53 4 1524 587 275 49 7 chr5 123147667 123147810 -29389449 - B1_Mur1 SINE Alu 0 149 1 4 1524 229 243 27 41 chr5 123147810 123147871 -29389388 + B1F SINE Alu 89 148 -1 4 1524 207 125 0 0 chr5 123147921 123147961 -29389298 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 4 1524 351 0 0 0 chr5 123148037 123148076 -29389183 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1524 461 252 24 16 chr5 123148076 123148201 -29389058 + B4A SINE B4 61 186 -106 4 1524 1132 204 34 17 chr5 123149039 123149274 -29387985 - B4A SINE B4 -53 239 1 4 1524 361 248 61 44 chr5 123149391 123149505 -29387754 - PB1D10 SINE Alu 0 117 2 4 1524 774 57 4 65 chr5 123149831 123149954 -29387305 + B1_Mus1 SINE Alu 21 137 -11 4 1524 436 295 70 28 chr5 123150283 123150496 -29386763 - Tigger15a DNA TcMar -238 477 256 4 1524 216 0 0 0 chr5 123150576 123150600 -29386659 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1524 529 311 29 51 chr5 123150600 123150799 -29386460 - ID_B1 SINE B4 -75 217 20 4 1524 313 255 85 14 chr5 123150887 123151033 -29386226 - MLT1M LTR MaLR -289 306 85 4 1524 263 297 87 37 chr5 123151089 123151250 -29386009 - Tigger15a DNA TcMar -481 234 66 4 1524 678 248 54 0 chr5 123151310 123151439 -29385820 + ID_B1 SINE B4 85 220 -4 4 1524 235 331 47 105 chr5 123151327 123151499 -29385760 - YREP_Mm Unknown Unknown -1516 296 135 4 1524 984 279 5 9 chr5 123151471 123151688 -29385571 + B4A SINE B4 6 221 -71 4 1524 919 145 21 0 chr5 123151705 123151850 -29385409 + B1_Mur4 SINE Alu 3 150 0 4 1524 408 20 0 0 chr5 123151853 123151902 -29385357 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1524 207 0 0 0 chr5 123151923 123151946 -29385313 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1524 753 174 27 40 chr5 123151968 123152118 -29385141 + B1_Mur2 SINE Alu 2 149 0 4 1524 243 246 229 0 chr5 123152119 123152180 -29385079 + B4 SINE B4 215 289 -3 4 1524 371 238 29 38 chr5 123152185 123152209 -29385050 - PB1D10 SINE Alu -12 105 83 4 1524 360 0 0 0 chr5 123152209 123152249 -29385010 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1524 371 238 29 38 chr5 123152249 123152329 -29384930 - PB1D10 SINE Alu -35 82 3 4 1524 587 170 188 0 chr5 123152498 123152610 -29384649 - B1_Mur1 SINE Alu -16 133 1 4 1524 2285 212 52 4 chr5 123152661 123153159 -29384100 - Lx9 LINE L1 -66 7578 7057 4 1524 1163 107 0 6 chr5 123153160 123153339 -29383920 + (TTC)n Simple_repeat Simple_repeat 3 180 0 4 1524 552 126 0 0 chr5 123153339 123153426 -29383833 + (TCC)n Simple_repeat Simple_repeat 3 89 0 4 1524 577 117 31 21 chr5 123153430 123153526 -29383733 - Lx9 LINE L1 -591 7053 6957 4 1524 649 242 119 16 chr5 123153572 123153757 -29383502 - B3 SINE B2 -10 206 3 4 1524 554 261 0 26 chr5 123153909 123154023 -29383236 - ID_B1 SINE B4 -19 205 95 4 1524 374 338 113 84 chr5 123154038 123154325 -29382934 - L1MD LINE L1 -792 5354 5067 4 1524 1141 77 0 0 chr5 123154325 123154468 -29382791 - B1_Mus1 SINE Alu -5 143 1 4 1524 374 338 113 84 chr5 123154468 123154665 -29382594 - L1MD LINE L1 -1080 5066 4856 4 1524 684 200 52 0 chr5 123154762 123154897 -29382362 + B3A SINE B2 1 142 -56 4 1524 297 222 82 14 chr5 123154931 123155004 -29382255 + B3A SINE B2 4 81 -117 4 1524 2585 199 17 32 chr5 123155004 123155533 -29381726 + RLTR12B LTR ERVK 1 521 -7 4 1524 380 267 86 8 chr5 123155538 123155655 -29381604 + B3A SINE B2 73 198 0 4 1524 1213 54 0 0 chr5 123155688 123155835 -29381424 + B1_Mus2 SINE Alu 1 147 0 4 1524 418 276 20 20 chr5 123156047 123156147 -29381112 - RSINE1 SINE B4 -47 118 19 4 1524 579 230 87 0 chr5 123156156 123156282 -29380977 - B1F2 SINE Alu -12 137 1 4 1524 257 163 163 0 chr5 123158677 123158726 -29378533 - RCHARR1 DNA MER1_type -36 938 882 4 1524 569 189 47 10 chr5 123158776 123158892 -29378367 + B1_Mur2 SINE Alu 21 148 -2 4 1524 352 232 183 0 chr5 123159060 123159142 -29378117 + PB1D10 SINE Alu 17 113 -4 4 1524 304 175 9 7 chr5 123159211 123159319 -29377940 - B2_Mm2 SINE B2 -5 190 47 4 1524 1314 69 29 0 chr5 123159365 123159539 -29377720 - B2_Mm2 SINE B2 -14 181 3 4 1524 567 261 25 25 chr5 123159992 123160149 -29377110 - RSINE1 SINE B4 -4 161 5 4 1524 561 226 63 24 chr5 123160172 123160299 -29376960 - ID_B1 SINE B4 -11 213 82 4 1524 813 131 38 8 chr5 123160333 123160464 -29376795 + B1_Mur4 SINE Alu 5 139 -11 4 1524 763 127 96 15 chr5 123160551 123160687 -29376572 - B1_Mus1 SINE Alu 0 148 2 4 1524 883 157 0 0 chr5 123161055 123161189 -29376070 + B1_Mus1 SINE Alu 1 134 -14 4 1524 717 45 0 0 chr5 123161191 123161280 -29375979 + (GAAA)n Simple_repeat Simple_repeat 2 90 0 4 1524 1354 77 0 58 chr5 123161280 123161486 -29375773 + B2_Mm2 SINE B2 2 195 0 4 1524 296 281 76 65 chr5 123161621 123161767 -29375492 - MIR SINE MIR -42 226 81 4 1524 636 174 201 21 chr5 123161893 123162087 -29375172 + B4 SINE B4 1 229 -63 4 1524 710 225 0 23 chr5 123162087 123162219 -29375040 + B1_Mur1 SINE Alu 1 129 -20 4 1524 1423 55 0 21 chr5 123162210 123162397 -29374862 + B2_Mm1a SINE B2 6 188 -5 4 1524 271 312 13 0 chr5 123162405 123162482 -29374777 + B4 SINE B4 213 290 -2 4 1524 483 228 49 10 chr5 123162509 123162611 -29374648 + B1F SINE Alu 37 142 -7 4 1524 1039 141 0 0 chr5 123162620 123162769 -29374490 + B1_Mur3 SINE Alu 1 149 0 4 1524 353 336 107 16 chr5 123162797 123162918 -29374341 + RSINE1 SINE B4 29 160 -5 4 1524 603 284 0 26 chr5 123162946 123163098 -29374161 + B1F1 SINE Alu 1 148 -1 4 1524 282 236 19 270 chr5 123163158 123163203 -29374056 + MIR SINE MIR 46 82 -180 4 1524 4583 52 13 2 chr5 123163203 123163757 -29373502 - LTRIS2 LTR ERV1 0 564 5 4 1524 282 236 19 270 chr5 123163757 123163802 -29373457 + MIR SINE MIR 83 102 -160 4 1524 1203 61 0 0 chr5 123163802 123163949 -29373310 - B1_Mus2 SINE Alu 0 147 1 4 1524 282 243 37 233 chr5 123163949 123164094 -29373165 + MIR SINE MIR 103 244 -24 4 1524 214 265 0 0 chr5 123165104 123165153 -29372106 - ID4 SINE ID -33 50 2 4 1524 594 0 0 0 chr5 123165286 123165352 -29371907 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1524 533 243 0 130 chr5 123165449 123165610 -29371649 + B1_Mur1 SINE Alu 2 141 -8 4 1524 1443 65 16 5 chr5 123165630 123165816 -29371443 + B2_Mm2 SINE B2 3 190 -5 4 1524 956 179 0 0 chr5 123166593 123166744 -29370515 + B3 SINE B2 1 151 -65 4 1524 597 206 95 0 chr5 123166791 123166917 -29370342 - B1F2 SINE Alu -1 148 11 4 1524 261 308 103 83 chr5 123166792 123166937 -29370322 - B4A SINE B4 -68 224 77 4 1524 1042 197 11 21 chr5 123166952 123167139 -29370120 - B3 SINE B2 -30 186 2 4 1524 425 242 65 32 chr5 123167222 123167440 -29369819 - L1MB7 LINE L1 -299 5875 5651 4 1524 779 207 0 0 chr5 123167566 123167706 -29369553 - B3A SINE B2 -58 140 1 4 1524 504 248 16 0 chr5 123167742 123167863 -29369396 + ID_B1 SINE B4 91 213 -11 4 1524 465 19 0 0 chr5 123167893 123167947 -29369312 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1524 1052 172 4 85 chr5 123168021 123168256 -29369003 - B3 SINE B2 0 216 1 4 1524 244 222 31 31 chr5 123168742 123168807 -29368452 + tRNA-Ala-GCY_ tRNA tRNA 2 66 -9 4 1524 829 149 13 51 chr5 123169521 123169677 -29367582 - B1_Mur4 SINE Alu 0 150 1 4 1524 387 288 36 0 chr5 123169771 123169882 -29367377 - RSINE1 SINE B4 -36 129 15 4 1524 2588 107 12 7 chr5 123169916 123170320 -29366939 - Lx3_Mus LINE L1 0 7009 6604 5 1524 268 250 0 18 chr5 123170320 123170377 -29366882 - B1F SINE Alu -93 56 1 5 1524 714 12 0 0 chr5 123170419 123170502 -29366757 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1524 229 394 15 30 chr5 123170699 123170830 -29366429 - MLT1K LTR MaLR -425 170 42 5 1524 1069 66 0 0 chr5 123171383 123171520 -29365739 - B1_Mm SINE Alu -10 137 1 5 1524 863 147 28 7 chr5 123171541 123171685 -29365574 + B1_Mur3 SINE Alu 2 148 -1 5 1524 459 0 0 0 chr5 123171975 123172026 -29365233 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1524 401 276 89 8 chr5 123172050 123172174 -29365085 + RSINE1 SINE B4 3 136 -29 5 1524 397 272 48 0 chr5 123172239 123172342 -29364917 + PB1D10 SINE Alu 4 111 -6 5 1524 1242 20 0 0 chr5 123172355 123172501 -29364758 - B1_Mm SINE Alu 0 147 2 5 1524 821 176 0 7 chr5 123172519 123172662 -29364597 + B1_Mur4 SINE Alu 2 143 -7 5 1524 639 295 54 11 chr5 123172744 123172929 -29364330 + B4 SINE B4 58 250 -42 5 1524 1432 73 5 0 chr5 123173078 123173269 -29363990 - B2_Mm1a SINE B2 -1 192 1 5 1524 298 189 26 26 chr5 123173379 123173455 -29363804 + L1M4 LINE L1 5752 5827 -357 5 1524 253 217 0 16 chr5 123173471 123173532 -29363727 - PB1D10 SINE Alu -45 72 13 5 1524 251 292 0 0 chr5 123173479 123173544 -29363715 - B4A SINE B4 -142 150 86 5 1524 1237 113 49 0 chr5 123173929 123174114 -29363145 - B2_Mm2 SINE B2 -1 194 1 5 1524 1306 64 32 0 chr5 123174736 123174923 -29362336 + B2_Mm1t SINE B2 1 193 0 5 1524 1098 88 0 0 chr5 123175468 123175616 -29361643 + B1_Mus1 SINE Alu 1 148 0 5 1524 198 0 0 0 chr5 123175616 123175638 -29361621 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1524 378 318 221 33 chr5 123175674 123176067 -29361192 - MLT1C LTR MaLR 0 467 1 5 1524 383 292 0 17 chr5 123178476 123178591 -29358668 - PB1D10 SINE Alu 0 117 5 5 1524 935 110 7 27 chr5 123179608 123179758 -29357501 - B1_Mus1 SINE Alu -1 147 1 5 1524 648 245 36 31 chr5 123179789 123179983 -29357276 + B3A SINE B2 3 197 -1 5 1524 404 285 171 55 chr5 123180041 123180334 -29356925 + MLT1A1 LTR MaLR 22 348 -17 5 1524 342 0 0 0 chr5 123180618 123180656 -29356603 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1524 547 204 10 0 chr5 123180710 123180813 -29356446 - PB1D10 SINE Alu -9 108 5 5 1524 547 172 10 0 chr5 123180723 123180822 -29356437 - ID_B1 SINE B4 -48 176 77 5 1524 180 125 0 0 chr5 123181942 123181974 -29355285 + (G)n Simple_repeat Simple_repeat 1 32 0 5 1524 273 89 0 0 chr5 123183167 123183212 -29354047 + (T)n Simple_repeat Simple_repeat 1 45 0 5 1524 267 154 0 0 chr5 123183878 123183943 -29353316 + A-rich Low_complexity Low_complexity 2 66 0 5 1524 348 320 82 22 chr5 123185625 123185697 -29351562 + L1MB7 LINE L1 5798 5868 -316 5 1524 402 21 0 0 chr5 123185697 123185744 -29351515 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1524 348 320 82 22 chr5 123185744 123185853 -29351406 + L1MB7 LINE L1 5869 5990 -194 5 1524 261 151 104 52 chr5 123185998 123186075 -29351184 - ID4_ SINE ID 0 83 3 5 1524 314 277 114 18 chr5 123186187 123186301 -29350958 - B4 SINE B4 -120 172 48 5 1524 1025 62 28 0 chr5 123187901 123188045 -29349214 - B1_Mus1 SINE Alu 0 148 1 5 1524 655 287 98 32 chr5 123188124 123188354 -29348905 - MER2 DNA MER2_type -30 315 67 5 1524 1151 48 0 14 chr5 123188354 123188502 -29348757 - B1_Mus1 SINE Alu -1 147 2 5 1524 655 287 98 32 chr5 123188502 123188548 -29348711 - MER2 DNA MER2_type -279 66 21 5 1524 363 228 194 12 chr5 123188580 123188740 -29348519 - L1MB7 LINE L1 -116 6068 5880 5 1524 1153 54 0 20 chr5 123188760 123188910 -29348349 - B1_Mus2 SINE Alu 0 147 1 5 1524 667 204 73 124 chr5 123188920 123189138 -29348121 - B3 SINE B2 -9 207 1 5 1524 911 208 30 0 chr5 123189152 123189320 -29347939 - B3 SINE B2 -43 173 1 5 1524 285 29 0 0 chr5 123189345 123189379 -29347880 + (TGG)n Simple_repeat Simple_repeat 2 35 0 5 1524 325 321 126 9 chr5 123189380 123189603 -29347656 - B4A SINE B4 -9 283 35 5 1524 301 267 0 55 chr5 123189613 123189704 -29347555 + B3A SINE B2 97 182 -16 5 1524 500 287 95 23 chr5 123189764 123190028 -29347231 + L1MB7 LINE L1 5725 6007 -177 5 1524 708 248 27 64 chr5 123190631 123190851 -29346408 - B3 SINE B2 -4 212 1 5 1524 1314 79 11 0 chr5 123192818 123192995 -29344264 + B2_Mm1t SINE B2 3 181 -12 5 1524 355 124 0 5 chr5 123193040 123193105 -29344154 + B2_Mm2 SINE B2 47 109 -107 5 1524 747 268 23 32 chr5 123193141 123193361 -29343898 - ID_B1 SINE B4 -6 218 1 5 1524 238 288 0 0 chr5 123194459 123194525 -29342734 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1524 542 212 0 11 chr5 123194545 123194726 -29342533 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1524 204 103 0 0 chr5 123194727 123194756 -29342503 + (TATG)n Simple_repeat Simple_repeat 4 32 0 5 1524 870 166 0 0 chr5 123194760 123194935 -29342324 + (TG)n Simple_repeat Simple_repeat 1 175 0 5 1524 398 129 0 0 chr5 123195208 123195270 -29341989 + B1_Mus2 SINE Alu 84 145 -2 5 1524 236 308 0 25 chr5 123195403 123195483 -29341776 + MER117 DNA MER1_type 112 189 -8 5 1524 1497 67 17 30 chr5 123196876 123196898 -29340361 + MTB LTR MaLR 174 193 -207 5 1524 1135 55 0 7 chr5 123196898 123197045 -29340214 + B1_Mus2 SINE Alu 1 146 -1 5 1524 202 29 28 28 chr5 123197045 123197081 -29340178 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 5 1524 1497 67 17 30 chr5 123197081 123197287 -29339972 + MTB LTR MaLR 194 399 -1 5 1524 584 224 91 113 chr5 123197344 123197565 -29339694 + B4 SINE B4 2 217 -75 5 1524 207 245 0 0 chr5 123197899 123197948 -29339311 + C-rich Low_complexity Low_complexity 1 49 0 5 1524 522 262 24 8 chr5 123198436 123198559 -29338700 + B1F SINE Alu 18 142 -7 5 1524 683 147 11 11 chr5 123198681 123198860 -29338399 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1524 216 339 16 0 chr5 123198867 123198929 -29338330 - ID4 SINE ID -14 69 7 5 1524 22 43 0 21 chr5 123198940 123198974 -29338285 + AT_rich Low_complexity Low_complexity 1 34 0 5 1524 889 91 266 0 chr5 123198974 123199128 -29338131 + B2_Mm2 SINE B2 1 195 0 5 1524 22 43 0 21 chr5 123199128 123199140 -29338119 + AT_rich Low_complexity Low_complexity 1 12 0 5 1524 305 291 145 28 chr5 123199179 123199200 -29338059 - B4A SINE B4 -49 243 151 5 1524 495 147 18 81 chr5 123199200 123199311 -29337948 - PB1D9 SINE Alu -7 113 10 5 1524 305 291 145 28 chr5 123199311 123199324 -29337935 - B4A SINE B4 -49 150 82 5 1524 325 312 127 20 chr5 123199506 123199814 -29337445 + L2a LINE L2 3028 3421 -5 5 1524 1215 93 0 6 chr5 123200915 123201088 -29336171 - B2_Mm2 SINE B2 -22 173 2 5 1524 583 146 0 0 chr5 123201514 123201610 -29335649 + B1_Mur4 SINE Alu 43 138 -12 5 1524 853 230 39 39 chr5 123201754 123201962 -29335297 + B4 SINE B4 82 289 -3 5 1524 1135 21 27 20 chr5 123202082 123202228 -29335031 + B1_Mus2 SINE Alu 1 147 0 5 1524 621 259 0 13 chr5 123202955 123203104 -29334155 - B1_Mur1 SINE Alu -1 148 2 5 1524 337 237 0 106 chr5 123203171 123203256 -29334003 - RSINE1 SINE B4 -84 81 6 5 1524 1071 76 21 0 chr5 123203345 123203490 -29333769 + B1_Mus1 SINE Alu 1 148 0 5 1524 209 171 0 0 chr5 123203535 123203570 -29333689 + MIRc SINE MIR 115 149 -119 5 1524 1016 207 23 0 chr5 123204106 123204323 -29332936 + ID_B1 SINE B4 3 224 0 5 1524 208 85 85 0 chr5 123204337 123204384 -29332875 + (CAAAC)n Simple_repeat Simple_repeat 1 51 0 5 1524 306 260 13 13 chr5 123204955 123205033 -29332226 - B4 SINE B4 -214 78 1 5 1524 1303 100 26 0 chr5 123205101 123205291 -29331968 - B2_Mm2 SINE B2 0 195 1 5 1524 330 250 0 115 chr5 123205299 123205403 -29331856 - B1_Mur1 SINE Alu -21 128 37 5 1524 25 0 0 0 chr5 123205423 123205448 -29331811 + AT_rich Low_complexity Low_complexity 1 25 0 5 1524 561 261 142 22 chr5 123205657 123205952 -29331307 - L1MB5 LINE L1 -392 5967 5617 5 1524 1005 233 189 0 chr5 123205952 123206270 -29330989 + MTE2b LTR MaLR 2 379 0 5 1524 561 271 198 24 chr5 123206270 123206297 -29330962 - L1MB5 LINE L1 -558 5616 5591 5 1524 500 242 23 0 chr5 123206313 123206441 -29330818 - RSINE1 SINE B4 -33 132 2 5 1524 209 250 84 17 chr5 123207001 123207086 -29330173 - MIRb SINE MIR -164 104 10 5 1524 1172 29 0 0 chr5 123207164 123207303 -29329956 + B1_Mm SINE Alu 1 139 -8 5 1524 210 193 0 107 chr5 123207418 123207540 -29329719 + (CTGGGG)n Simple_repeat Simple_repeat 5 113 0 5 1525 263 312 140 14 chr5 123207684 123207827 -29329432 + MER102b DNA MER1_type 9 169 -172 5 1525 748 128 72 0 chr5 123207888 123208013 -29329246 - RMER6A LTR ERVK 0 756 623 5 1525 356 152 36 48 chr5 123208009 123208092 -29329167 - RMER6A LTR ERVK -379 82 1 5 1525 311 292 17 94 chr5 123208371 123208488 -29328771 + MT2B LTR ERVL 151 258 -343 5 1525 815 191 0 0 chr5 123208388 123208524 -29328735 + B1_Mur1 SINE Alu 6 141 -8 5 1525 1097 263 7 11 chr5 123208543 123208824 -29328435 + B4A SINE B4 2 281 -11 5 1525 833 284 36 21 chr5 123209134 123209415 -29327844 + B4A SINE B4 8 292 0 5 1525 497 183 21 21 chr5 123209618 123209713 -29327546 + ID_B1 SINE B4 124 218 -6 5 1525 1091 98 4 0 chr5 123209741 123210007 -29327252 + (CA)n Simple_repeat Simple_repeat 1 267 0 5 1525 2712 117 25 13 chr5 123210013 123210462 -29326797 + RMER12B LTR ERVK 1 454 -950 5 1525 1227 40 0 0 chr5 123210462 123210610 -29326649 + B1_Mus1 SINE Alu 1 148 0 5 1525 2538 266 120 20 chr5 123210615 123211475 -29325784 + Lx8 LINE L1 6170 7115 -358 5 1525 623 48 12 0 chr5 123211509 123211592 -29325667 + (GA)n Simple_repeat Simple_repeat 2 85 0 6 1525 1141 69 95 28 chr5 123211727 123211906 -29325353 + B2_Mm2 SINE B2 3 193 -2 6 1525 415 270 153 0 chr5 123211921 123212058 -29325201 - ID_B1 SINE B4 -62 162 5 6 1525 213 39 0 0 chr5 123212073 123212099 -29325160 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1525 1146 49 0 7 chr5 123212099 123212244 -29325015 - B1_Mus2 SINE Alu -3 144 1 6 1525 272 233 87 22 chr5 123212361 123212453 -29324806 + PB1D9 SINE Alu 13 110 -10 6 1525 228 35 0 0 chr5 123212453 123212482 -29324777 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1525 422 263 11 0 chr5 123212679 123212774 -29324485 - B1F2 SINE Alu -30 119 24 6 1525 582 220 71 28 chr5 123212808 123212990 -29324269 - B3A SINE B2 -5 193 4 6 1525 405 0 0 0 chr5 123212990 123213035 -29324224 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1525 382 245 99 76 chr5 123213035 123213207 -29324052 - MER2 DNA MER2_type -132 213 38 6 1525 227 288 35 43 chr5 123213234 123213350 -29323909 + L1ME2 LINE L1 5840 5954 -210 6 1525 329 255 0 105 chr5 123213390 123213504 -29323755 + PB1D10 SINE Alu 2 103 -14 6 1525 1487 51 0 5 chr5 123214427 123214623 -29322636 + B2_Mm2 SINE B2 1 195 0 6 1525 262 183 16 32 chr5 123214649 123214711 -29322548 + PB1D10 SINE Alu 57 117 0 6 1525 782 183 99 26 chr5 123214773 123214964 -29322295 + B3 SINE B2 1 205 -11 6 1525 684 52 10 49 chr5 123214964 123215066 -29322193 + B1_Mus1 SINE Alu 11 108 -40 6 1525 259 198 43 75 chr5 123214994 123215087 -29322172 + RLTR25B LTR ERVK 441 530 -498 6 1525 521 168 42 0 chr5 123215337 123215432 -29321827 + B1_Mur4 SINE Alu 4 102 -48 6 1525 235 0 0 54 chr5 123215440 123215477 -29321782 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1525 679 221 41 29 chr5 123215477 123215649 -29321610 + ID_B1 SINE B4 50 223 -1 6 1525 522 150 160 0 chr5 123215652 123215752 -29321507 + B1_Mur2 SINE Alu 1 116 -33 6 1525 302 107 0 18 chr5 123215752 123215809 -29321450 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1525 295 23 22 22 chr5 123215811 123215856 -29321403 + (GA)n Simple_repeat Simple_repeat 2 46 0 6 1525 603 253 103 26 chr5 123216009 123216204 -29321055 - B3 SINE B2 -6 210 1 6 1525 494 269 86 18 chr5 123216204 123216367 -29320892 - B4 SINE B4 -64 228 55 6 1525 842 177 177 0 chr5 123216438 123216613 -29320646 + B3 SINE B2 1 206 -10 6 1525 223 211 96 0 chr5 123216613 123216665 -29320594 + B3A SINE B2 95 151 -47 6 1525 288 0 0 0 chr5 123216672 123216704 -29320555 + (CA)n Simple_repeat Simple_repeat 2 33 0 6 1525 1143 55 7 0 chr5 123216725 123216871 -29320388 - B1_Mm SINE Alu 0 147 1 6 1525 234 195 0 83 chr5 123216985 123217058 -29320201 + B1_Mur1 SINE Alu 47 146 -3 6 1525 303 219 28 119 chr5 123217058 123217167 -29320092 + B4A SINE B4 3 101 -191 6 1525 710 277 128 22 chr5 123217279 123217552 -29319707 + L1MB5 LINE L1 5808 6109 -65 6 1525 496 213 18 18 chr5 123217572 123217682 -29319577 + PB1D9 SINE Alu 2 111 -9 6 1525 714 113 177 0 chr5 123217819 123217943 -29319316 - B1_Mus2 SINE Alu 0 147 2 6 1525 207 0 0 0 chr5 123218475 123218498 -29318761 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6 1525 976 103 0 64 chr5 123218498 123218654 -29318605 - B1_Mus1 SINE Alu -2 146 1 6 1525 542 252 236 5 chr5 123218692 123218895 -29318364 + B4A SINE B4 2 251 -41 6 1525 252 300 43 32 chr5 123219405 123219498 -29317761 + ID_B1 SINE B4 130 223 -1 6 1525 532 251 58 35 chr5 123219652 123219825 -29317434 - B3A SINE B2 -3 195 19 6 1525 244 103 0 0 chr5 123220060 123220099 -29317160 + MIRm SINE MIR 113 151 -125 6 1525 196 30 0 57 chr5 123221030 123221065 -29316194 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 6 1525 297 0 0 0 chr5 123221415 123221448 -29315811 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1525 451 253 68 62 chr5 123221639 123221816 -29315443 + ID_B1 SINE B4 32 209 -15 6 1525 231 36 0 0 chr5 123221824 123221852 -29315407 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 6 1525 1307 74 21 16 chr5 123222108 123222300 -29314959 + B2_Mm1t SINE B2 1 193 0 6 1525 496 269 56 0 chr5 123222305 123222413 -29314846 - PB1D10 SINE Alu -2 115 2 6 1525 946 82 0 0 chr5 123222608 123222730 -29314529 + B1_Mus1 SINE Alu 26 147 -1 6 1525 227 247 117 52 chr5 123222609 123222763 -29314496 - YREP_Mm Unknown Unknown -1521 291 128 6 1525 250 252 226 8 chr5 123223534 123223658 -29313601 + MLT1K LTR MaLR 369 519 -76 6 1525 254 244 287 0 chr5 123223971 123224086 -29313173 - MIRb SINE MIR -37 231 84 6 1525 726 235 46 41 chr5 123224159 123224354 -29312905 + B3A SINE B2 3 198 0 6 1525 618 208 25 100 chr5 123224414 123224574 -29312685 - B1_Mur3 SINE Alu 0 149 2 6 1525 189 159 0 0 chr5 123225129 123225173 -29312086 + GA-rich Low_complexity Low_complexity 1 44 0 6 1525 339 257 52 46 chr5 123225481 123225620 -29311639 + PB1D7 SINE Alu 1 138 -11 6 1525 737 51 10 0 chr5 123226243 123226341 -29310918 + (GAA)n Simple_repeat Simple_repeat 1 99 0 6 1525 273 260 98 0 chr5 123226404 123226504 -29310755 + L1MB5 LINE L1 5721 5829 -345 6 1525 533 296 54 49 chr5 123226519 123226743 -29310516 + L1MB5 LINE L1 5888 6112 -62 6 1525 232 266 0 161 chr5 123226765 123226833 -29310426 - BC1_Mm scRNA scRNA -56 96 3 6 1525 270 136 45 0 chr5 123226833 123226877 -29310382 - ID SINE ID -176 48 3 6 1525 609 52 0 0 chr5 123227250 123227327 -29309932 + (TC)n Simple_repeat Simple_repeat 1 77 0 6 1525 461 267 43 43 chr5 123227391 123227532 -29309727 - MER20B DNA MER1_type -642 141 1 6 1525 295 313 38 109 chr5 123227680 123227863 -29309396 + MIRb SINE MIR 88 257 -11 6 1525 1118 68 0 20 chr5 123228023 123228172 -29309087 - B1_Mus2 SINE Alu 0 147 2 6 1525 354 98 0 0 chr5 123229298 123229349 -29307910 + (CTCGG)n Simple_repeat Simple_repeat 3 53 0 6 1525 21 0 0 0 chr5 123229379 123229400 -29307859 + GC_rich Low_complexity Low_complexity 1 21 0 6 1525 211 176 0 0 chr5 123229501 123229535 -29307724 + G-rich Low_complexity Low_complexity 3 36 0 6 1525 526 198 90 0 chr5 123230420 123230531 -29306728 - RMER15 LTR ERVL -18 557 437 6 1525 360 259 110 101 chr5 123230894 123230966 -29306293 + ID SINE ID 4 65 -159 6 1525 1148 29 15 0 chr5 123230966 123231102 -29306157 + B1_Mus2 SINE Alu 1 138 -9 6 1525 360 259 110 101 chr5 123231102 123231126 -29306133 + ID SINE ID 66 89 -135 6 1525 1276 160 14 19 chr5 123231126 123231342 -29305917 + B3 SINE B2 2 216 0 6 1525 360 259 110 101 chr5 123231342 123231463 -29305796 + ID_B1 SINE B4 90 224 0 6 1525 3189 129 115 7 chr5 123231706 123232252 -29305007 - RLTR1D LTR ERV1 0 605 1 6 1525 467 242 10 0 chr5 123232325 123232424 -29304835 - MER58B DNA MER1_type -108 233 134 6 1525 240 159 23 0 chr5 123232520 123232564 -29304695 + RMER15 LTR ERVL 422 466 -109 6 1525 1645 37 0 0 chr5 123232667 123232855 -29304404 + B2_Mm1a SINE B2 2 189 -4 6 1525 1068 71 36 0 chr5 123232868 123233008 -29304251 + B1_Mm SINE Alu 2 146 -1 6 1525 572 267 99 0 chr5 123233164 123233295 -29303964 + B3 SINE B2 4 147 -69 6 1525 249 329 0 41 chr5 123233322 123233432 -29303827 - ID2 SINE ID -41 111 12 6 1525 285 336 56 112 chr5 123233528 123233796 -29303463 + MIRb SINE MIR 9 261 -7 6 1525 21 0 0 0 chr5 123234100 123234121 -29303138 + AT_rich Low_complexity Low_complexity 1 21 0 6 1525 293 331 55 8 chr5 123234859 123234987 -29302272 + MIR SINE MIR 56 189 -73 6 1525 509 240 81 96 chr5 123235007 123235205 -29302054 - B3A SINE B2 -3 195 1 6 1525 214 171 0 0 chr5 123235816 123235851 -29301408 + C-rich Low_complexity Low_complexity 1 35 0 6 1525 342 192 147 46 chr5 123235863 123235972 -29301287 + PB1D7 SINE Alu 1 120 0 6 1525 183 42 0 0 chr5 123236544 123236568 -29300691 + (CAA)n Simple_repeat Simple_repeat 2 25 0 6 1525 397 282 9 0 chr5 123236735 123236845 -29300414 + BC1_Mm scRNA scRNA 1 111 -41 6 1525 312 247 28 85 chr5 123236859 123236965 -29300294 - RSINE1 SINE B4 -7 158 59 6 1525 606 195 46 15 chr5 123237303 123237433 -29299826 - B1_Mur1 SINE Alu -6 143 10 6 1525 981 160 193 0 chr5 123237483 123237664 -29299595 - B3 SINE B2 0 216 1 6 1525 26 0 0 0 chr5 123238196 123238222 -29299037 + AT_rich Low_complexity Low_complexity 1 26 0 6 1525 669 236 0 13 chr5 123238722 123238872 -29298387 - B1F SINE Alu -1 148 1 6 1525 263 282 64 0 chr5 123238999 123239077 -29298182 + B1F SINE Alu 10 92 -57 6 1525 345 370 17 0 chr5 123239115 123239234 -29298025 + L1M4 LINE L1 4774 4894 -1252 6 1525 784 134 23 8 chr5 123239240 123239368 -29297891 - B1_Mur4 SINE Alu -1 149 20 6 1525 443 250 347 0 chr5 123239467 123239683 -29297576 + B4A SINE B4 2 292 0 6 1525 192 182 0 0 chr5 123239683 123239727 -29297532 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1525 382 246 72 46 chr5 123239729 123239908 -29297351 + L1M4 LINE L1 4968 5148 -995 6 1525 512 239 28 50 chr5 123240135 123240276 -29296983 + B1F2 SINE Alu 2 139 -10 6 1525 316 282 53 26 chr5 123240290 123240403 -29296856 + PB1D10 SINE Alu 1 116 -1 6 1525 353 250 0 102 chr5 123240471 123240491 -29296768 + MT2B LTR ERVL 149 236 -365 6 1525 555 64 26 0 chr5 123240491 123240569 -29296690 + B1_Mus1 SINE Alu 1 80 -68 6 1525 612 0 0 0 chr5 123240714 123240782 -29296477 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1525 436 228 79 0 chr5 123240920 123241034 -29296225 + L1M4 LINE L1 5572 5694 -480 6 1525 279 270 104 57 chr5 123241035 123241141 -29296118 + B4A SINE B4 1 111 -181 7 1525 417 305 28 74 chr5 123241158 123241374 -29295885 + B4A SINE B4 2 207 -85 7 1525 261 0 0 0 chr5 123241374 123241403 -29295856 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1525 24 53 0 0 chr5 123241403 123241441 -29295818 + AT_rich Low_complexity Low_complexity 1 38 0 7 1525 198 103 0 0 chr5 123241441 123241470 -29295789 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1525 307 270 27 0 chr5 123241483 123241557 -29295702 + B4 SINE B4 217 292 0 7 1525 1417 66 44 0 chr5 123242079 123242262 -29294997 + B2_Mm2 SINE B2 5 195 0 7 1525 204 179 0 0 chr5 123242262 123242301 -29294958 + GA-rich Low_complexity Low_complexity 1 39 0 7 1525 499 205 0 0 chr5 123242446 123242529 -29294730 + B1_Mus2 SINE Alu 65 147 0 7 1525 1350 105 5 0 chr5 123242533 123242724 -29294535 + B2_Mm1t SINE B2 2 193 0 7 1525 552 258 8 0 chr5 123242769 123242897 -29294362 + B3 SINE B2 87 215 -1 7 1525 302 327 62 37 chr5 123242905 123243067 -29294192 + B4A SINE B4 23 188 -104 7 1525 387 0 0 0 chr5 123243088 123243131 -29294128 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1525 201 74 0 0 chr5 123243137 123243164 -29294095 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 7 1525 1112 66 0 0 chr5 123243165 123243302 -29293957 - B1_Mus1 SINE Alu -9 139 3 7 1525 422 125 72 67 chr5 123243327 123243432 -29293827 - B1_Mus2 SINE Alu -20 127 19 7 1525 353 250 0 0 chr5 123243718 123243786 -29293473 + PB1D10 SINE Alu 9 76 -41 7 1525 340 331 53 69 chr5 123244022 123244151 -29293108 - ID_B1 SINE B4 -8 216 94 7 1525 285 75 0 0 chr5 123244151 123244191 -29293068 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1525 340 331 53 69 chr5 123244191 123244249 -29293010 - ID_B1 SINE B4 -131 93 33 7 1525 217 273 43 57 chr5 123244198 123244268 -29292991 - ID4_ SINE ID -1 82 14 7 1525 445 254 140 0 chr5 123244267 123244381 -29292878 - ID_B1 SINE B4 -66 158 29 7 1525 1222 28 7 0 chr5 123244636 123244778 -29292481 + B1_Mus2 SINE Alu 3 145 -2 7 1525 209 57 0 28 chr5 123244778 123244814 -29292445 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1525 1207 55 0 7 chr5 123245014 123245162 -29292097 + B1_Mus1 SINE Alu 2 148 0 7 1525 214 195 0 0 chr5 123245162 123245203 -29292056 + A-rich Low_complexity Low_complexity 1 41 0 7 1525 295 305 38 8 chr5 123245208 123245340 -29291919 - B1F1 SINE Alu -13 136 1 7 1525 417 278 28 57 chr5 123245439 123245580 -29291679 + B1F SINE Alu 13 149 0 7 1525 599 207 54 82 chr5 123245777 123245924 -29291335 - B1_Mur1 SINE Alu 0 149 7 7 1525 690 60 0 0 chr5 123246010 123246094 -29291165 + B2_Mm1a SINE B2 77 160 -33 7 1525 228 67 0 0 chr5 123246094 123246124 -29291135 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 7 1525 413 193 113 81 chr5 123246360 123246484 -29290775 - RSINE1 SINE B4 -36 129 2 7 1525 671 210 48 0 chr5 123246673 123246797 -29290462 - B3 SINE B2 -86 130 1 7 1525 294 29 0 0 chr5 123247089 123247124 -29290135 + (CGGT)n Simple_repeat Simple_repeat 3 37 0 7 1525 726 274 132 23 chr5 123247158 123247371 -29289888 + B4 SINE B4 36 270 -22 7 1525 1208 61 0 0 chr5 123247503 123247650 -29289609 + B1_Mus1 SINE Alu 2 148 0 7 1525 216 0 0 0 chr5 123247650 123247674 -29289585 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1525 1581 43 0 0 chr5 123247674 123247860 -29289399 + B2_Mm1a SINE B2 2 187 -6 7 1525 342 0 0 0 chr5 123247891 123247929 -29289330 + (TC)n Simple_repeat Simple_repeat 2 39 0 7 1525 961 88 58 14 chr5 123248514 123248652 -29288607 - B1_Mus2 SINE Alu -2 145 2 7 1525 394 184 23 60 chr5 123248878 123248995 -29288264 - B1_Mur2 SINE Alu 0 149 38 7 1525 790 230 56 32 chr5 123250825 123251041 -29286218 + MIRb SINE MIR 2 222 -46 7 1525 323 286 174 42 chr5 123251531 123251721 -29285538 - MER58C DNA MER1_type 0 215 1 7 1525 472 207 0 0 chr5 123251741 123251823 -29285436 + ID4 SINE ID 2 83 0 7 1525 1227 61 0 0 chr5 123253333 123253481 -29283778 - B1_Mus1 SINE Alu 0 148 1 7 1525 310 200 231 11 chr5 123254212 123254303 -29282956 + PB1D10 SINE Alu 1 111 -6 7 1525 226 221 188 14 chr5 123254804 123254873 -29282386 + ID4_ SINE ID 1 81 -2 7 1525 559 253 172 0 chr5 123254822 123254996 -29282263 + ID_B1 SINE B4 21 224 0 7 1525 289 287 93 0 chr5 123255527 123255635 -29281624 - Charlie19a DNA Charlie -252 134 17 7 1525 23 33 0 0 chr5 123255830 123255860 -29281399 + AT_rich Low_complexity Low_complexity 1 30 0 7 1525 481 252 56 28 chr5 123255879 123256022 -29281237 - B1F SINE Alu 0 149 3 7 1525 711 150 113 0 chr5 123256036 123256169 -29281090 - B1_Mur2 SINE Alu 0 149 2 7 1525 420 82 0 0 chr5 123256608 123256669 -29280590 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1525 264 184 52 103 chr5 123258465 123258562 -29278697 - PB1D9 SINE Alu -10 110 19 7 1525 22 35 0 0 chr5 123258576 123258605 -29278654 + AT_rich Low_complexity Low_complexity 1 29 0 7 1525 1021 112 128 0 chr5 123258650 123258819 -29278440 - B2_Mm2 SINE B2 -14 202 1 7 1525 553 254 34 27 chr5 123258830 123258976 -29278283 - B1_Mur1 SINE Alu -1 148 2 7 1525 1264 118 21 5 chr5 123259033 123259221 -29278038 - B2_Mm2 SINE B2 0 195 5 7 1525 333 0 0 0 chr5 123259222 123259259 -29278000 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1525 389 276 41 10 chr5 123259267 123259391 -29277868 - PB1D10 SINE Alu -5 144 22 7 1525 1004 96 0 7 chr5 123259457 123259593 -29277666 - B1_Mus2 SINE Alu -11 136 2 7 1525 375 181 106 11 chr5 123259603 123259707 -29277552 - B1_Mus2 SINE Alu -1 147 40 7 1525 967 168 21 16 chr5 123259717 123259905 -29277354 - B2_Mm2 SINE B2 -6 189 1 7 1525 1145 69 0 14 chr5 123259995 123260133 -29277126 + B1_Mm SINE Alu 3 140 -7 7 1525 273 29 0 0 chr5 123260133 123260167 -29277092 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 7 1525 987 97 14 7 chr5 123260190 123260335 -29276924 + B2_Mm2 SINE B2 1 146 -49 7 1525 1079 73 0 0 chr5 123260334 123260471 -29276788 + B1_Mus1 SINE Alu 12 148 0 7 1525 24 96 0 0 chr5 123260486 123260559 -29276700 + AT_rich Low_complexity Low_complexity 1 73 0 7 1525 627 136 21 17 chr5 123260719 123260854 -29276405 + B1_Mus1 SINE Alu 1 139 -9 7 1525 207 0 0 0 chr5 123260854 123260877 -29276382 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1525 634 163 32 3 chr5 123260931 123261072 -29276187 + B3 SINE B2 2 215 -1 7 1525 440 202 210 0 chr5 123261086 123261205 -29276054 + B1_Mus1 SINE Alu 3 146 -2 7 1525 559 234 65 0 chr5 123261241 123261365 -29275894 + B1F2 SINE Alu 5 136 -13 7 1525 761 261 38 14 chr5 123261393 123261603 -29275656 + B3 SINE B2 1 215 -1 7 1525 1218 48 0 0 chr5 123261644 123261790 -29275469 + B1_Mm SINE Alu 2 147 0 7 1525 189 0 0 0 chr5 123261790 123261811 -29275448 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1525 572 229 115 62 chr5 123261811 123261995 -29275264 - B3 SINE B2 0 216 2 7 1525 472 220 120 0 chr5 123262496 123262596 -29274663 - PB1D9 SINE Alu -8 112 1 7 1525 738 220 21 48 chr5 123262821 123263007 -29274252 + B3A SINE B2 3 183 -15 7 1525 23 0 0 0 chr5 123263015 123263038 -29274221 + AT_rich Low_complexity Low_complexity 1 23 0 7 1525 430 307 9 0 chr5 123263240 123263354 -29273905 + PB1D7 SINE Alu 3 117 -3 7 1525 462 264 18 9 chr5 123263378 123263489 -29273770 - RSINE1 SINE B4 -52 113 2 7 1525 552 257 74 37 chr5 123263523 123263713 -29273546 + B4A SINE B4 82 278 -14 7 1525 2273 207 37 23 chr5 123263776 123264290 -29272969 + RLTR20C LTR ERVK 3 523 -11 7 1525 22 0 0 0 chr5 123264639 123264661 -29272598 + AT_rich Low_complexity Low_complexity 1 22 0 7 1525 1212 54 0 0 chr5 123264724 123264871 -29272388 + B1_Mm SINE Alu 1 147 0 7 1525 333 291 36 72 chr5 123264901 123265012 -29272247 + PB1D10 SINE Alu 10 116 -1 7 1525 328 216 55 33 chr5 123265057 123265148 -29272111 + L1M3 LINE L1 5731 5823 -360 7 1525 487 194 88 10 chr5 123265154 123265285 -29271974 + B3A SINE B2 3 164 -52 7 1525 407 253 32 0 chr5 123265371 123265466 -29271793 - B1F1 SINE Alu -4 145 48 7 1525 1053 122 0 0 chr5 123265572 123265719 -29271540 + B1_Mus1 SINE Alu 2 148 0 7 1525 180 354 123 0 chr5 123265761 123265891 -29271368 + L2b LINE L2 3230 3375 0 7 1525 344 276 122 0 chr5 123266243 123266341 -29270918 + PB1D7 SINE Alu 9 118 -2 7 1525 1047 81 0 0 chr5 123266468 123266604 -29270655 + B1_Mm SINE Alu 12 147 0 7 1525 751 211 7 13 chr5 123266980 123267129 -29270130 - B1_Mur3 SINE Alu 0 149 2 7 1525 315 182 91 0 chr5 123267170 123267225 -29270034 + B1F1 SINE Alu 69 128 -21 7 1525 182 281 107 68 chr5 123267226 123267329 -29269930 - L4 LINE RTE -434 1595 1489 7 1525 248 317 114 46 chr5 123267561 123267736 -29269523 - LTR33 LTR ERVL -275 240 54 7 1525 788 246 31 5 chr5 123269354 123269546 -29267713 - ID_B1 SINE B4 -22 202 6 7 1525 259 230 190 26 chr5 123269961 123270077 -29267182 + MIRc SINE MIR 117 251 -17 7 1525 826 143 15 0 chr5 123270301 123270434 -29266825 + B1_Mur3 SINE Alu 14 148 -1 7 1525 1401 90 21 0 chr5 123270438 123270626 -29266633 + B2_Mm1a SINE B2 2 193 0 7 1525 296 20 286 0 chr5 123270634 123270683 -29266576 + B1_Mm SINE Alu 85 147 0 8 1525 223 208 13 40 chr5 123270689 123270764 -29266495 + A-rich Low_complexity Low_complexity 1 73 0 8 1525 218 194 0 0 chr5 123271745 123271781 -29265478 - PB1D10 SINE Alu -22 95 60 8 1525 238 197 95 32 chr5 123271753 123271816 -29265443 - ID_B1 SINE B4 -27 197 131 8 1525 641 220 0 72 chr5 123271889 123272041 -29265218 + B1_Mur1 SINE Alu 3 143 -6 8 1525 1025 96 7 33 chr5 123272051 123272202 -29265057 + B1_Mus1 SINE Alu 2 148 0 8 1525 240 188 318 0 chr5 123272232 123272317 -29264942 - PB1D9 SINE Alu -5 115 4 8 1525 774 190 192 43 chr5 123272627 123272814 -29264445 + B3 SINE B2 2 216 0 8 1525 22 0 0 0 chr5 123272818 123272840 -29264419 + AT_rich Low_complexity Low_complexity 1 22 0 8 1525 609 53 310 35 chr5 123272879 123272995 -29264264 - B2_Mm2 SINE B2 -1 194 47 8 1525 1201 73 79 0 chr5 123273024 123273189 -29264070 - B2_Mm1t SINE B2 -15 178 1 8 1525 323 212 114 5 chr5 123273311 123273397 -29263862 + B3A SINE B2 9 100 -116 8 1525 1198 68 0 0 chr5 123273463 123273610 -29263649 + B1_Mm SINE Alu 1 147 0 8 1525 2113 69 3 92 chr5 123273637 123273972 -29263287 + ORR1A2 LTR MaLR 8 312 -15 8 1525 492 209 171 0 chr5 123273977 123274082 -29263177 - B1_Mus1 SINE Alu -25 123 1 8 1525 242 295 39 69 chr5 123274086 123274188 -29263071 + B3 SINE B2 90 188 -28 8 1525 862 193 62 43 chr5 123274204 123274362 -29262897 + B3 SINE B2 2 172 -44 8 1525 234 0 0 0 chr5 123274362 123274388 -29262871 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1525 862 193 62 43 chr5 123274388 123274440 -29262819 + B3 SINE B2 173 215 -1 8 1525 396 0 0 0 chr5 123274446 123274490 -29262769 + (GAAA)n Simple_repeat Simple_repeat 2 45 0 8 1525 815 128 82 15 chr5 123274774 123274909 -29262350 + B2_Mm2 SINE B2 48 191 -4 8 1525 461 306 22 15 chr5 123274938 123275074 -29262185 - B1F1 SINE Alu -6 143 7 8 1525 546 294 7 13 chr5 123275293 123275448 -29261811 + RSINE1 SINE B4 12 165 0 8 1525 813 178 135 27 chr5 123276491 123276676 -29260583 + B3 SINE B2 1 205 -11 8 1525 1011 73 0 7 chr5 123276703 123276841 -29260418 - B1_Mus1 SINE Alu -1 147 11 8 1525 1129 97 66 33 chr5 123276860 123277042 -29260217 - B2_Mm2 SINE B2 -7 188 1 8 1525 285 29 0 0 chr5 123277057 123277092 -29260167 - U2 snRNA snRNA -153 35 1 8 1525 35 18 0 35 chr5 123277092 123277119 -29260140 + AT_rich Low_complexity Low_complexity 1 27 0 8 1525 1080 108 0 0 chr5 123277119 123277267 -29259992 + B1_Mus1 SINE Alu 1 148 0 8 1525 35 18 0 35 chr5 123277267 123277296 -29259963 + AT_rich Low_complexity Low_complexity 1 28 0 8 1525 1199 54 0 0 chr5 123277730 123277877 -29259382 + B1_Mus2 SINE Alu 1 147 0 8 1525 306 183 0 0 chr5 123277877 123277948 -29259311 + A-rich Low_complexity Low_complexity 1 71 0 8 1525 225 0 0 0 chr5 123278067 123278092 -29259167 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1525 896 162 0 20 chr5 123278116 123278267 -29258992 + B1_Mus1 SINE Alu 1 148 0 8 1525 972 211 9 45 chr5 123278350 123278573 -29258686 + B3 SINE B2 2 216 0 8 1525 30 45 0 0 chr5 123278620 123278664 -29258595 + AT_rich Low_complexity Low_complexity 1 44 0 8 1525 1625 268 30 65 chr5 123278675 123279190 -29258069 + Lx5 LINE L1 6441 6874 -586 8 1525 360 0 0 0 chr5 123279190 123279230 -29258029 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 8 1525 1113 53 0 0 chr5 123279230 123279363 -29257896 - B1_Mm SINE Alu -13 134 2 8 1525 1625 276 48 58 chr5 123279363 123279533 -29257726 + Lx5 LINE L1 6872 7040 -10 8 1525 712 160 128 0 chr5 123279569 123279694 -29257565 + B1_Mur4 SINE Alu 1 141 -9 8 1525 258 32 0 0 chr5 123279706 123279737 -29257522 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1525 303 140 0 0 chr5 123279819 123279869 -29257390 + (GA)n Simple_repeat Simple_repeat 1 50 0 8 1525 339 25 0 0 chr5 123280068 123280108 -29257151 + (CAAAC)n Simple_repeat Simple_repeat 5 44 0 8 1525 575 233 142 67 chr5 123280168 123280255 -29257004 + Lx9 LINE L1 7357 7457 -187 8 1525 477 0 0 0 chr5 123280255 123280308 -29256951 + (TA)n Simple_repeat Simple_repeat 2 54 0 8 1525 1246 34 0 0 chr5 123280318 123280464 -29256795 - B1_Mus2 SINE Alu 0 147 2 8 1525 575 233 142 67 chr5 123280464 123280632 -29256627 + Lx9 LINE L1 7473 7642 -2 8 1525 322 220 123 26 chr5 123280652 123280745 -29256514 - RCHARR1 DNA MER1_type -10 964 869 8 1525 1440 90 0 5 chr5 123280745 123280935 -29256324 + B2_Mm2 SINE B2 2 190 -5 8 1525 322 220 123 26 chr5 123280935 123280995 -29256264 - RCHARR1 DNA MER1_type -106 868 796 8 1525 1026 207 34 0 chr5 123281009 123281217 -29256042 - B3 SINE B2 0 216 2 8 1525 377 167 0 0 chr5 123281274 123281340 -29255919 - RCHARR1 DNA MER1_type -377 597 532 8 1525 805 58 0 16 chr5 123281344 123281466 -29255793 + B1_Mus1 SINE Alu 2 121 -27 8 1525 300 118 0 0 chr5 123281457 123281508 -29255751 + B3 SINE B2 166 216 0 8 1525 314 256 127 143 chr5 123281634 123281800 -29255459 + B4 SINE B4 60 228 -64 8 1525 1125 95 0 0 chr5 123281800 123281947 -29255312 + B1_Mus2 SINE Alu 1 147 0 8 1525 314 256 127 143 chr5 123281947 123282017 -29255242 + B4 SINE B4 229 292 0 8 1525 487 278 35 0 chr5 123282058 123282202 -29255057 + RSINE1 SINE B4 11 159 -6 8 1525 1207 85 50 11 chr5 123282238 123282417 -29254842 + B2_Mm2 SINE B2 1 186 -9 8 1525 23 0 0 0 chr5 123282425 123282448 -29254811 + AT_rich Low_complexity Low_complexity 1 23 0 8 1525 525 213 6 39 chr5 123282489 123282645 -29254614 - RCHARR1 DNA MER1_type -463 511 361 8 1525 785 159 7 27 chr5 123282797 123282946 -29254313 - B1_Mus2 SINE Alu 0 147 2 8 1525 257 234 15 15 chr5 123283083 123283148 -29254111 - MLT1K LTR MaLR -338 257 193 8 1525 421 219 19 29 chr5 123283445 123283565 -29253694 + B1_Mur1 SINE Alu 31 149 0 8 1525 943 55 0 0 chr5 123283594 123283721 -29253538 + B1_Mus2 SINE Alu 15 141 -6 8 1525 218 32 0 31 chr5 123283723 123283755 -29253504 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 8 1525 3087 59 13 10 chr5 123283764 123284158 -29253101 - MTA_Mm LTR MaLR -1 395 1 8 1525 1238 102 11 26 chr5 123284364 123284555 -29252704 + B2_Mm2 SINE B2 1 188 -7 8 1525 311 171 13 0 chr5 123284622 123284698 -29252561 + (TA)n Simple_repeat Simple_repeat 1 77 0 8 1525 266 291 25 25 chr5 123284721 123284802 -29252457 + ID4_ SINE ID 1 81 -2 8 1525 461 221 21 0 chr5 123284871 123284966 -29252293 + B1_Mus2 SINE Alu 1 97 -50 8 1525 296 281 31 0 chr5 123284880 123284976 -29252283 + ID_B1 SINE B4 91 189 -35 8 1525 209 197 15 0 chr5 123285008 123285074 -29252185 + (TG)n Simple_repeat Simple_repeat 2 68 0 8 1525 262 156 0 0 chr5 123285190 123285235 -29252024 - PB1D9 SINE Alu 0 120 76 8 1525 263 222 47 47 chr5 123285259 123285344 -29251915 - B4 SINE B4 -206 86 2 8 1525 1547 68 0 0 chr5 123285968 123286160 -29251099 + B2_Mm1t SINE B2 1 192 -1 8 1525 240 211 83 14 chr5 123286224 123286296 -29250963 + PB1 SINE Alu 48 124 -3 8 1525 681 260 15 40 chr5 123286679 123286835 -29250424 + ID_B1 SINE B4 29 186 -38 8 1525 1381 70 11 11 chr5 123286835 123287022 -29250237 + B2_Mm1a SINE B2 3 189 -4 8 1525 681 260 15 40 chr5 123287022 123287065 -29250194 + ID_B1 SINE B4 187 223 -1 8 1525 716 293 6 0 chr5 123287191 123287372 -29249887 - B3A SINE B2 -15 183 2 8 1525 1248 150 68 11 chr5 123287684 123287947 -29249312 - RMER6C LTR ERVK -13 677 400 8 1525 1326 53 16 36 chr5 123287969 123288115 -29249144 + B2_Mm2 SINE B2 3 146 -49 8 1525 2121 100 30 3 chr5 123288115 123288416 -29248843 - RLTR27 LTR ERVK 0 309 1 8 1525 1326 53 16 36 chr5 123288416 123288463 -29248796 + B2_Mm2 SINE B2 147 192 -3 8 1525 1654 110 101 14 chr5 123288460 123288756 -29248503 - RMER6C LTR ERVK -368 322 1 8 1525 414 230 0 74 chr5 123288807 123288915 -29248344 + B1F SINE Alu 2 101 -48 8 1525 1153 88 0 0 chr5 123288922 123289069 -29248190 - B1_Mm SINE Alu 0 147 1 8 1525 281 0 77 0 chr5 123290335 123290374 -29246885 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 8 1525 1254 27 0 26 chr5 123290386 123290538 -29246721 + B1_Mus1 SINE Alu 1 148 0 8 1525 1458 79 16 0 chr5 123290693 123290883 -29246376 - B2_Mm2 SINE B2 -1 194 2 8 1525 517 28 0 40 chr5 123290891 123290965 -29246294 - B1_Mus2 SINE Alu 0 147 77 8 1525 239 236 53 63 chr5 123290896 123290991 -29246268 - ID_B1 SINE B4 -2 222 129 8 1525 519 17 0 0 chr5 123291011 123291071 -29246188 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 8 1525 1493 237 63 12 chr5 123291110 123291589 -29245670 - RLTR11A2 LTR ERVK 0 527 1 8 1525 731 289 10 0 chr5 123291589 123291750 -29245509 - ID_B1 SINE B4 -61 163 1 8 1525 203 211 39 0 chr5 123291964 123292016 -29245243 + (GGGTG)n Simple_repeat Simple_repeat 4 57 0 8 1525 952 151 89 6 chr5 123292064 123292244 -29245015 + B2_Mm2 SINE B2 1 195 0 8 1525 530 127 98 106 chr5 123292255 123292378 -29244881 + B1_Mur4 SINE Alu 10 131 -19 8 1525 459 78 0 0 chr5 123292393 123292457 -29244802 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1525 513 32 0 0 chr5 123292481 123292544 -29244715 + (TA)n Simple_repeat Simple_repeat 1 63 0 8 1525 1209 54 0 0 chr5 123292558 123292705 -29244554 + B1_Mus1 SINE Alu 2 148 0 8 1525 886 286 258 27 chr5 123292720 123293238 -29244021 + RMER13A LTR ERVK 191 827 -33 8 1525 336 225 8 14 chr5 123293266 123293351 -29243908 - B1_Mur4 SINE Alu -32 117 30 8 1525 553 175 117 0 chr5 123293469 123293589 -29243670 - B1_Mur2 SINE Alu 0 149 16 8 1525 399 141 0 0 chr5 123293642 123293706 -29243553 + RLTR23 LTR ERV1 5 68 -362 8 1525 699 46 0 0 chr5 123293706 123293793 -29243466 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 8 1525 794 58 0 0 chr5 123293793 123293897 -29243362 - B1_Mm SINE Alu -10 137 34 8 1525 319 250 55 46 chr5 123293818 123293927 -29243332 - MT2B LTR ERVL -337 264 155 8 1525 433 253 52 73 chr5 123294120 123294312 -29242947 + RLTR23 LTR ERV1 239 426 -4 8 1525 333 309 89 18 chr5 123294383 123294495 -29242764 - PB1 SINE Alu -3 124 5 9 1525 501 270 22 14 chr5 123294657 123294796 -29242463 + RSINE1 SINE B4 3 142 -23 9 1525 995 49 43 0 chr5 123294823 123294986 -29242273 + (TAGA)n Simple_repeat Simple_repeat 4 173 0 9 1525 365 299 36 72 chr5 123295020 123295186 -29242073 + RSINE1 SINE B4 4 163 -2 9 1525 27 0 0 0 chr5 123295311 123295338 -29241921 + AT_rich Low_complexity Low_complexity 1 27 0 9 1525 222 262 33 0 chr5 123295340 123295401 -29241858 + B1F2 SINE Alu 21 83 -66 9 1525 1317 14 0 0 chr5 123295403 123295550 -29241709 + B1_Mm SINE Alu 1 147 0 9 1525 394 280 62 39 chr5 123295958 123296088 -29241171 + ID_B1 SINE B4 80 212 -12 9 1525 261 279 163 0 chr5 123296063 123296149 -29241110 + ID_B1 SINE B4 37 136 -88 9 1525 453 236 100 0 chr5 123296102 123296212 -29241047 + B1_Mus1 SINE Alu 10 130 -18 9 1525 2035 135 52 28 chr5 123296184 123296572 -29240687 + RMER6B LTR ERVK 6 402 -59 9 1525 310 260 0 27 chr5 123296598 123296673 -29240586 + B1_Mur1 SINE Alu 71 143 -6 9 1525 641 288 5 107 chr5 123296678 123296770 -29240489 + B3 SINE B2 3 81 -135 9 1525 1079 50 35 0 chr5 123296770 123296911 -29240348 - B1_Mus1 SINE Alu -1 147 2 9 1525 641 288 5 107 chr5 123296911 123297024 -29240235 + B3 SINE B2 82 187 -29 9 1525 365 281 68 54 chr5 123297069 123297216 -29240043 - RSINE1 SINE B4 -15 150 2 9 1525 22 35 0 0 chr5 123297219 123297248 -29240011 + AT_rich Low_complexity Low_complexity 1 29 0 9 1525 532 270 12 50 chr5 123297271 123297431 -29239828 - RSINE1 SINE B4 0 165 12 9 1525 365 290 199 23 chr5 123297545 123297887 -29239372 - L1M4 LINE L1 -409 5775 5374 9 1525 711 241 0 0 chr5 123297944 123298085 -29239174 - B1_Mur1 SINE Alu -3 146 6 9 1525 740 366 24 34 chr5 123298109 123298403 -29238856 - B4A SINE B4 -1 291 1 9 1525 450 158 21 21 chr5 123298477 123298574 -29238685 - B1_Mur3 SINE Alu -22 127 31 9 1525 473 173 79 35 chr5 123298650 123298764 -29238495 - PB1D9 SINE Alu -1 119 1 9 1525 923 201 54 0 chr5 123298825 123299009 -29238250 + B3 SINE B2 14 207 -9 9 1525 1171 68 0 14 chr5 123299107 123299255 -29238004 - B1_Mm SINE Alu 0 147 2 9 1525 520 196 56 70 chr5 123299455 123299598 -29237661 + B1_Mur3 SINE Alu 4 144 -5 9 1525 234 176 0 0 chr5 123299954 123300005 -29237254 + (CCCCG)n Simple_repeat Simple_repeat 4 54 0 9 1525 290 26 26 0 chr5 123300957 123300996 -29236263 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1525 274 243 43 0 chr5 123301392 123301462 -29235797 + B1F2 SINE Alu 7 79 -70 9 1525 244 314 48 63 chr5 123301611 123301737 -29235522 + B1F SINE Alu 18 141 -8 9 1525 293 197 87 18 chr5 123301792 123301884 -29235375 - B1F1 SINE Alu -5 144 19 9 1525 201 74 0 0 chr5 123301994 123302021 -29235238 + (TATG)n Simple_repeat Simple_repeat 4 30 0 9 1525 831 254 5 38 chr5 123302026 123302235 -29235024 - B3 SINE B2 -13 203 2 9 1525 503 226 41 21 chr5 123302241 123302428 -29234831 - B3 SINE B2 0 195 7 9 1525 1489 154 183 31 chr5 123302646 123303029 -29234230 - RMER10A LTR ERVL 0 442 2 9 1525 354 138 0 0 chr5 123303060 123303118 -29234141 + (T)n Simple_repeat Simple_repeat 1 58 0 9 1525 331 276 53 45 chr5 123303227 123303244 -29234015 + B1F SINE Alu 10 143 -6 9 1525 427 237 43 17 chr5 123303244 123303360 -29233899 + ID_B1 SINE B4 100 218 -6 9 1525 290 317 60 33 chr5 123303427 123303577 -29233682 + RSINE1 SINE B4 3 156 -9 9 1525 642 189 61 0 chr5 123303994 123304126 -29233133 + B1_Mur2 SINE Alu 1 140 -9 9 1525 750 175 0 0 chr5 123304562 123304705 -29232554 + CT-rich Low_complexity Low_complexity 2 144 0 9 1525 1204 36 0 0 chr5 123304719 123304859 -29232400 - B1_Mm SINE Alu -6 141 2 9 1525 1312 92 60 0 chr5 123304866 123305050 -29232209 - B2_Mm2 SINE B2 0 195 1 9 1525 1202 62 0 0 chr5 123305435 123305581 -29231678 + B1_Mus2 SINE Alu 2 147 0 9 1525 556 123 47 0 chr5 123305652 123305758 -29231501 - B2_Mm2 SINE B2 0 195 85 9 1525 895 137 70 23 chr5 123305923 123306095 -29231164 + B2_Mm2 SINE B2 10 189 -6 9 1525 1207 61 0 0 chr5 123306691 123306838 -29230421 - B1_Mm SINE Alu 0 147 1 9 1525 1946 157 106 14 chr5 123307126 123307476 -29229783 + ORR1C2 LTR MaLR 3 384 0 9 1525 440 214 0 11 chr5 123307481 123307571 -29229688 - B4 SINE B4 -95 197 109 9 1525 261 301 194 70 chr5 123307609 123307795 -29229464 - ID_B1 SINE B4 -8 216 8 9 1525 229 292 0 58 chr5 123308017 123308086 -29229173 - B4A SINE B4 -3 289 225 9 1525 270 213 0 0 chr5 123308096 123308143 -29229116 + polypyrimidine Low_complexity Low_complexity 4 50 0 9 1525 477 196 27 40 chr5 123308143 123308370 -29228889 + C-rich Low_complexity Low_complexity 1 223 0 9 1525 827 0 98 0 chr5 123308375 123308498 -29228761 + (TTCCC)n Simple_repeat Simple_repeat 4 138 0 9 1525 288 116 0 0 chr5 123308506 123308549 -29228710 + B1_Mur1 SINE Alu 91 133 -16 9 1525 1124 43 0 14 chr5 123308562 123308703 -29228556 + B1_Mus1 SINE Alu 1 139 -9 9 1525 182 37 0 36 chr5 123308703 123308731 -29228528 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1525 488 261 29 36 chr5 123308768 123308907 -29228352 + B1_Mur2 SINE Alu 5 142 -7 9 1525 389 152 11 92 chr5 123309329 123309432 -29227827 - B1_Mus1 SINE Alu -53 96 3 9 1525 207 0 0 0 chr5 123309436 123309459 -29227800 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1525 1231 41 0 0 chr5 123309914 123310060 -29227199 - B1_Mus2 SINE Alu 0 147 2 9 1525 234 309 0 0 chr5 123310168 123310236 -29227023 + B1_Mur3 SINE Alu 81 148 -1 9 1525 358 266 0 12 chr5 123310278 123310358 -29226901 - ID4_ SINE ID -1 82 4 9 1525 1570 127 220 33 chr5 123310563 123310986 -29226273 - RMER6A LTR ERVK -254 502 1 9 1525 209 259 25 0 chr5 123311213 123311294 -29225965 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 9 1525 861 159 0 0 chr5 123311315 123311351 -29225908 - B1_Mur2 SINE Alu -9 140 3 9 1525 387 202 7 131 chr5 123311351 123311453 -29225806 - MT2B LTR ERVL -344 257 167 9 1525 934 197 64 0 chr5 123311453 123311656 -29225603 - B3 SINE B2 0 216 1 9 1525 387 202 7 131 chr5 123311656 123311690 -29225569 - MT2B LTR ERVL -435 166 138 9 1525 794 141 0 29 chr5 123311998 123312137 -29225122 - B1_Mm SINE Alu -2 145 11 9 1525 329 232 0 112 chr5 123312043 123312150 -29225109 - MT2B LTR ERVL -343 258 164 9 1525 374 247 34 0 chr5 123312537 123312626 -29224633 - B1F SINE Alu -57 92 1 9 1525 488 256 102 18 chr5 123312653 123312820 -29224439 - B3A SINE B2 -16 182 2 9 1525 534 274 60 54 chr5 123312823 123313008 -29224251 - B3A SINE B2 -4 194 9 9 1525 1322 71 27 6 chr5 123313022 123313205 -29224054 - B2_Mm2 SINE B2 -8 187 1 9 1525 462 256 93 8 chr5 123313228 123313346 -29223913 + B1F SINE Alu 1 128 -21 9 1525 264 222 48 0 chr5 123314722 123314785 -29222474 - ID_B1 SINE B4 0 224 159 9 1525 383 296 157 31 chr5 123314787 123315010 -29222249 - B4A SINE B4 -9 283 33 9 1525 1181 48 7 0 chr5 123315046 123315191 -29222068 + B1_Mus2 SINE Alu 2 147 0 9 1525 506 197 41 33 chr5 123315440 123315561 -29221698 + B3 SINE B2 9 130 -86 9 1525 1079 27 287 0 chr5 123315954 123316104 -29221155 + B2_Mm1a SINE B2 1 193 0 9 1525 1492 58 16 0 chr5 123316122 123316312 -29220947 + B2_Mm1a SINE B2 1 193 0 9 1525 231 277 0 0 chr5 123316312 123316359 -29220900 + B4A SINE B4 95 141 -151 9 1525 215 323 93 41 chr5 123316359 123316409 -29220850 + PB1D10 SINE Alu 10 111 -6 9 1525 655 236 14 77 chr5 123316486 123316706 -29220553 - B3 SINE B2 -9 207 2 9 1525 303 161 0 0 chr5 123316840 123316896 -29220363 + (ATG)n Simple_repeat Simple_repeat 3 58 0 9 1525 281 202 225 0 chr5 123317361 123317450 -29219809 + PB1D10 SINE Alu 6 114 -3 9 1525 666 223 92 10 chr5 123317468 123317663 -29219596 + B3 SINE B2 1 211 -5 9 1525 604 98 167 0 chr5 123319218 123319320 -29217939 - PB1D9 SINE Alu 0 120 2 9 1525 349 263 162 13 chr5 123319413 123319567 -29217692 + MER2 DNA MER2_type 169 345 0 9 1525 700 40 30 0 chr5 123319675 123319775 -29217484 + B1_Mus2 SINE Alu 45 147 0 9 1525 372 315 83 7 chr5 123320011 123320155 -29217104 + RSINE1 SINE B4 3 157 -8 9 1525 1335 75 32 5 chr5 123322881 123323070 -29214189 + B2_Mm2 SINE B2 1 194 -1 9 1525 288 287 19 29 chr5 123323082 123323186 -29214073 - PB1D10 SINE Alu -14 103 1 9 1525 375 243 77 10 chr5 123324881 123324985 -29212274 + B3 SINE B2 106 216 0 9 1525 544 281 7 0 chr5 123325630 123325769 -29211490 - B1_Mur2 SINE Alu -9 140 1 9 1525 26 30 0 0 chr5 123325771 123325804 -29211455 + AT_rich Low_complexity Low_complexity 1 33 0 9 1525 292 352 47 9 chr5 123325806 123325912 -29211347 - RSINE1 SINE B4 -28 137 28 9 1525 378 86 321 0 chr5 123325965 123326046 -29211213 - B1_Mur4 SINE Alu -1 149 43 9 1525 319 128 201 39 chr5 123326046 123326123 -29211136 + L1M4 LINE L1 4824 4928 -1218 9 1525 459 0 0 0 chr5 123326182 123326233 -29211026 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1525 529 269 37 37 chr5 123326233 123326395 -29210864 + B3A SINE B2 1 162 -36 9 1525 236 271 81 30 chr5 123326823 123326922 -29210337 + HAL1 LINE L1 2015 2118 -389 1 1525 207 0 0 0 chr5 123327396 123327419 -29209840 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1525 383 238 103 19 chr5 123333554 123333661 -29203598 - L2a LINE L2 -32 3394 3279 1 1525 405 0 0 0 chr5 123333838 123333883 -29203376 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1525 254 286 239 45 chr5 123333949 123334150 -29203109 + Charlie1a DNA MER1_type 239 478 -977 1 1525 254 364 61 0 chr5 123334170 123334269 -29202990 - PB1D10 SINE Alu -12 105 1 1 1525 1160 62 7 0 chr5 123334291 123334435 -29202824 - B1_Mus2 SINE Alu -1 146 2 1 1525 253 256 197 0 chr5 123334748 123334865 -29202394 + Charlie1a DNA MER1_type 821 960 -495 1 1525 340 241 55 87 chr5 123334862 123334876 -29202383 + MT2B LTR ERVL 157 218 -383 1 1525 556 139 118 10 chr5 123334876 123334978 -29202281 + B1_Mus1 SINE Alu 5 117 -31 1 1525 340 241 55 87 chr5 123334978 123334989 -29202270 + MT2B LTR ERVL 219 279 -322 1 1525 191 88 29 0 chr5 123334993 123335027 -29202232 + (CAA)n Simple_repeat Simple_repeat 3 37 0 1 1525 812 272 133 24 chr5 123335065 123335434 -29201825 + Charlie1a DNA MER1_type 958 1366 -89 1 1525 399 216 111 20 chr5 123335637 123335736 -29201523 + B1_Mur3 SINE Alu 2 109 -40 1 1525 312 238 0 45 chr5 123336022 123336110 -29201149 - B1F SINE Alu -24 125 42 1 1525 390 232 70 50 chr5 123336625 123336725 -29200534 - PB1D9 SINE Alu -6 114 13 1 1525 457 207 166 29 chr5 123336725 123336800 -29200459 + B3 SINE B2 59 132 -84 1 1525 306 50 0 0 chr5 123336800 123336840 -29200419 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1525 457 207 166 29 chr5 123336840 123336903 -29200356 + B3 SINE B2 133 215 -1 1 1525 495 240 146 83 chr5 123336942 123337395 -29199864 + L1MB2 LINE L1 5255 5751 -417 1 1525 270 221 39 13 chr5 123337436 123337514 -29199745 + PB1D7 SINE Alu 40 119 -1 1 1525 480 289 96 47 chr5 123337568 123337869 -29199390 + L1MB2 LINE L1 5856 6171 0 1 1526 366 311 98 30 chr5 123338882 123339117 -29198142 + MLT1C LTR MaLR 57 307 -160 1 1526 1224 48 0 0 chr5 123339703 123339850 -29197409 + B1_Mus2 SINE Alu 1 147 0 1 1526 1410 127 23 5 chr5 123340057 123340278 -29196981 + URR1B DNA MER1_type 1 225 0 1 1526 292 328 67 8 chr5 123341078 123341198 -29196061 - MIRb SINE MIR -55 213 87 1 1526 1164 68 0 7 chr5 123341896 123342043 -29195216 - B1_Mus2 SINE Alu 0 147 2 1 1526 598 260 103 29 chr5 123342294 123342468 -29194791 - ID_B1 SINE B4 -21 203 17 1 1526 1128 97 0 0 chr5 123342533 123342678 -29194581 + B1_Mm SINE Alu 3 147 0 1 1526 225 74 52 69 chr5 123342682 123342740 -29194519 + A-rich Low_complexity Low_complexity 2 58 0 1 1526 1255 113 21 11 chr5 123342827 123343014 -29194245 + B2_Mm2 SINE B2 2 190 -5 1 1526 407 179 143 0 chr5 123343014 123343098 -29194161 - PB1D9 SINE Alu -19 101 6 1 1526 190 357 0 58 chr5 123343152 123343256 -29194003 - L2 LINE L2 -3037 382 285 1 1526 484 272 183 19 chr5 123343386 123343697 -29193562 + L1M4 LINE L1 4804 5165 -981 1 1526 269 75 0 0 chr5 123343699 123343739 -29193520 + B3 SINE B2 1 40 -176 1 1526 266 68 92 36 chr5 123343776 123343846 -29193413 + B2_Mm1a SINE B2 127 194 -1 1 1526 473 173 136 0 chr5 123343867 123343948 -29193311 + B3 SINE B2 27 118 -98 1 1526 261 239 51 102 chr5 123343961 123344044 -29193215 + L1M4 LINE L1 5236 5321 -825 1 1526 882 200 102 5 chr5 123344044 123344240 -29193019 + B3 SINE B2 2 216 0 1 1526 261 239 51 102 chr5 123344240 123344333 -29192926 + L1M4 LINE L1 5322 5403 -743 1 1526 224 283 0 0 chr5 123344365 123344418 -29192841 + (CTCA)n Simple_repeat Simple_repeat 1 53 0 1 1526 210 350 0 80 chr5 123344452 123344564 -29192695 - L2c LINE L2 -40 3347 3245 1 1526 403 321 73 0 chr5 123344628 123344765 -29192494 - MIR SINE MIR -95 167 21 1 1526 306 172 194 39 chr5 123345517 123345620 -29191639 + PB1D9 SINE Alu 2 120 0 1 1526 431 229 9 44 chr5 123345666 123345780 -29191479 + PB1D9 SINE Alu 9 118 -2 1 1526 435 237 25 33 chr5 123345877 123345999 -29191260 + B1F SINE Alu 29 149 0 1 1526 362 73 36 0 chr5 123346043 123346098 -29191161 + B1_Mus2 SINE Alu 2 58 -89 1 1526 543 275 145 0 chr5 123346106 123346244 -29191015 + RSINE1 SINE B4 2 159 -6 1 1526 240 286 63 0 chr5 123346284 123346347 -29190912 + ID4_ SINE ID 3 69 -14 1 1526 263 269 40 70 chr5 123346818 123346918 -29190341 + ID_B1 SINE B4 90 186 -38 1 1526 675 0 0 0 chr5 123346920 123346995 -29190264 + (GGAAA)n Simple_repeat Simple_repeat 4 78 0 1 1526 390 296 103 27 chr5 123347060 123347171 -29190088 + RSINE1 SINE B4 5 126 -39 1 1526 432 67 0 0 chr5 123347171 123347231 -29190028 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1526 390 296 103 27 chr5 123347231 123347265 -29189994 + RSINE1 SINE B4 127 160 -5 1 1526 312 259 5 25 chr5 123347331 123347420 -29189839 + PB1D10 SINE Alu 14 103 -17 1 1526 298 283 66 0 chr5 123347343 123347449 -29189810 + ID_B1 SINE B4 107 219 -5 1 1526 329 278 41 57 chr5 123348617 123348739 -29188520 + PB1D7 SINE Alu 1 120 0 1 1526 198 0 0 0 chr5 123349121 123349143 -29188116 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1526 23 0 0 0 chr5 123349902 123349925 -29187334 + GC_rich Low_complexity Low_complexity 1 23 0 1 1526 32 57 0 0 chr5 123349987 123350040 -29187219 + GC_rich Low_complexity Low_complexity 1 53 0 1 1526 31 68 0 0 chr5 123350332 123350391 -29186868 + GC_rich Low_complexity Low_complexity 1 59 0 1 1526 26 82 0 0 chr5 123350530 123350591 -29186668 + GC_rich Low_complexity Low_complexity 1 61 0 1 1526 198 143 0 0 chr5 123352077 123352112 -29185147 + (GGA)n Simple_repeat Simple_repeat 2 36 0 1 1526 324 0 0 0 chr5 123352676 123352712 -29184547 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1 1526 436 237 10 40 chr5 123352742 123352843 -29184416 + B1F2 SINE Alu 10 107 -42 1 1526 396 0 0 0 chr5 123352900 123352944 -29184315 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1526 399 298 60 22 chr5 123352950 123353084 -29184175 - B1F1 SINE Alu -2 147 9 1 1526 495 285 23 8 chr5 123354124 123354255 -29183004 + B1_Mur1 SINE Alu 11 143 -6 1 1526 363 246 71 43 chr5 123354296 123354436 -29182823 + B1F SINE Alu 5 148 -1 1 1526 463 247 0 0 chr5 123355362 123355459 -29181800 - PB1D10 SINE Alu -20 97 1 1 1526 327 300 67 106 chr5 123355810 123355861 -29181398 + B4 SINE B4 49 220 -72 1 1526 674 167 55 16 chr5 123355861 123355989 -29181270 + B1_Mur4 SINE Alu 12 144 -6 1 1526 866 216 16 21 chr5 123356069 123356258 -29181001 + B3A SINE B2 5 192 -6 1 1526 353 260 22 5 chr5 123356274 123356366 -29180893 - B1F SINE Alu -5 144 65 1 1526 369 0 0 0 chr5 123356395 123356436 -29180823 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1526 480 35 0 0 chr5 123356515 123356573 -29180686 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1526 279 0 0 0 chr5 123356653 123356684 -29180575 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1526 241 328 16 0 chr5 123356747 123356808 -29180451 - RSINE1 SINE B4 -73 92 31 1 1526 577 183 42 34 chr5 123356837 123356956 -29180303 - PB1D9 SINE Alu 0 120 1 1 1526 227 344 10 79 chr5 123356956 123357046 -29180213 - PB1D7 SINE Alu -11 109 26 1 1526 225 146 0 0 chr5 123357515 123357563 -29179696 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 1 1526 1007 80 71 32 chr5 123357563 123357718 -29179541 - B2_Mm2 SINE B2 -34 161 1 1 1526 281 189 156 39 chr5 123357896 123357973 -29179286 - PB1D9 SINE Alu 0 120 35 1 1526 418 231 65 28 chr5 123357993 123358030 -29179229 - PB1D9 SINE Alu 0 120 10 1 1526 235 299 85 61 chr5 123358030 123358100 -29179159 - MT2B LTR ERVL -360 241 169 1 1526 973 159 41 0 chr5 123358100 123358270 -29178989 + B2_Mm1t SINE B2 3 179 -14 1 1526 235 299 85 61 chr5 123358270 123358281 -29178978 - MT2B LTR ERVL -433 168 158 1 1526 336 119 349 9 chr5 123358298 123358407 -29178852 + B2_Mm2 SINE B2 47 192 -3 1 1526 524 101 0 0 chr5 123358466 123358535 -29178724 + B1_Mus2 SINE Alu 1 69 -78 1 1526 361 222 28 0 chr5 123358691 123358763 -29178496 + B1F1 SINE Alu 10 83 -66 1 1526 1173 56 21 0 chr5 123358797 123358941 -29178318 - B1_Mus1 SINE Alu 0 148 2 1 1526 229 250 31 15 chr5 123359174 123359239 -29178020 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 1 1526 227 271 17 17 chr5 123359363 123359423 -29177836 + GA-rich Low_complexity Low_complexity 3 62 0 1 1526 294 265 122 47 chr5 123360094 123360201 -29177058 + PB1D9 SINE Alu 4 118 -2 1 1526 323 309 65 92 chr5 123360189 123360206 -29177053 + B4 SINE B4 72 84 -208 1 1526 718 232 35 0 chr5 123360206 123360348 -29176911 + B1_Mur2 SINE Alu 3 149 0 1 1526 389 221 144 0 chr5 123360404 123360508 -29176751 + B1F SINE Alu 31 149 0 1 1526 391 371 58 17 chr5 123360673 123360846 -29176413 - LTR33 LTR ERVL -244 271 92 1 1526 230 253 158 13 chr5 123361073 123361149 -29176110 + MLT1B LTR MaLR 302 388 -2 1 1526 536 165 11 11 chr5 123361568 123361660 -29175599 - B4A SINE B4 -73 219 128 1 1526 239 257 39 51 chr5 123362284 123362362 -29174897 + MER82 DNA MER2_type 132 208 -445 1 1526 354 23 0 0 chr5 123362531 123362574 -29174685 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1526 189 225 0 24 chr5 123362697 123362738 -29174521 + MIRm SINE MIR 44 83 -193 1 1526 407 285 92 8 chr5 123362810 123362941 -29174318 + B1F1 SINE Alu 1 142 -7 1 1526 1054 174 38 5 chr5 123362957 123363142 -29174117 + B3 SINE B2 9 199 -17 1 1526 930 114 8 0 chr5 123363140 123363191 -29174068 + MT2B2 LTR ERVL 209 260 -324 1 1526 265 278 95 69 chr5 123363191 123363307 -29173952 + B1F SINE Alu 4 122 -27 1 1526 651 210 0 0 chr5 123363321 123363445 -29173814 + RMER15-int LTR ERVL 2617 2740 -2259 1 1526 2001 72 15 4 chr5 123363457 123363724 -29173535 - MT2C_Mm LTR ERVL -205 270 1 1 1526 301 261 47 68 chr5 123363724 123363753 -29173506 - ORR1A3-int LTR MaLR -1347 616 591 1 1526 4982 232 93 51 chr5 123363758 123365355 -29171904 + RMER15-int LTR ERVL 2748 4412 -587 1 1526 692 300 140 46 chr5 123365365 123365843 -29171416 + Lx8 LINE L1 6537 7059 -414 1 1526 507 33 0 0 chr5 123365890 123365951 -29171308 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1526 814 227 32 21 chr5 123365951 123366140 -29171119 + B3 SINE B2 16 206 -10 1 1526 290 238 0 16 chr5 123366408 123366425 -29170834 + ORR1B1-int LTR MaLR 633 647 -862 1 1526 1087 70 14 0 chr5 123366425 123366568 -29170691 + B1_Mus1 SINE Alu 2 146 -2 1 1526 1230 88 65 11 chr5 123366661 123366845 -29170414 + B2_Mm2 SINE B2 1 194 -1 1 1526 563 168 49 74 chr5 123366950 123367072 -29170187 + PB1D9 SINE Alu 2 120 0 1 1526 1174 64 0 0 chr5 123367085 123367226 -29170033 + B1_Mus2 SINE Alu 1 141 -6 1 1526 206 32 32 0 chr5 123367233 123367264 -29169995 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1 1526 214 263 8 143 chr5 123367440 123367573 -29169686 - PB1 SINE Alu -6 121 7 1 1526 417 252 36 36 chr5 123367471 123367582 -29169677 - ID_B1 SINE B4 -34 190 80 1 1526 327 269 101 9 chr5 123367608 123367717 -29169542 - MIRb SINE MIR -83 185 67 1 1526 625 149 149 0 chr5 123367849 123367963 -29169296 + B1_Mus2 SINE Alu 5 135 -12 1 1526 193 259 82 0 chr5 123368836 123368921 -29168338 - L2a LINE L2 -100 3326 3235 1 1526 548 329 0 14 chr5 123369352 123369497 -29167762 - ID_B1 SINE B4 0 224 82 1 1526 271 240 35 130 chr5 123369511 123369626 -29167633 + MT2B LTR ERVL 176 279 -322 1 1526 226 349 42 77 chr5 123369626 123369646 -29167613 + B1_Mur4 SINE Alu 13 144 -6 1 1526 580 148 203 8 chr5 123369646 123369769 -29167490 + B1_Mur3 SINE Alu 2 148 -1 1 1526 494 210 77 47 chr5 123369853 123370023 -29167236 + MER53 DNA hAT 5 179 -14 1 1526 444 242 70 25 chr5 123369886 123370043 -29167216 - MER53 DNA hAT -29 164 1 1 1526 259 264 86 21 chr5 123370044 123370137 -29167122 - Charlie5 DNA MER1_type -153 2471 2373 1 1526 233 269 95 21 chr5 123370340 123370435 -29166824 - BC1_Mm scRNA scRNA -45 107 6 1 1526 427 244 50 42 chr5 123370436 123370556 -29166703 - B1F1 SINE Alu -3 146 26 1 1526 974 180 54 11 chr5 123370600 123370785 -29166474 + URR1A DNA MER1_type 34 226 0 1 1526 253 177 113 0 chr5 123370849 123370911 -29166348 + B2_Mm2 SINE B2 1 69 -126 1 1526 1027 99 0 7 chr5 123371570 123371712 -29165547 + B1_Mus1 SINE Alu 1 141 -7 1 1526 290 229 12 44 chr5 123371817 123371902 -29165357 - PB1D9 SINE Alu -8 141 57 1 1526 525 290 66 40 chr5 123372032 123372258 -29165001 - B4A SINE B4 -21 271 29 1 1526 1166 82 0 7 chr5 123372270 123372418 -29164841 - B1_Mus2 SINE Alu 0 147 1 1 1526 707 151 27 61 chr5 123372418 123372558 -29164701 + B1_Mus1 SINE Alu 4 139 -9 1 1526 423 87 0 0 chr5 123372558 123372627 -29164632 + (CATA)n Simple_repeat Simple_repeat 2 70 0 1 1526 1421 53 26 26 chr5 123372789 123372982 -29164277 + B2_Mm2 SINE B2 1 193 -2 1 1526 396 289 0 0 chr5 123373006 123373110 -29164149 + ID_B1 SINE B4 121 224 0 1 1526 284 316 25 121 chr5 123373372 123373570 -29163689 + MamRep137 DNA TcMar? 3 181 -263 1 1526 258 255 255 0 chr5 123373772 123373878 -29163381 - RSINE1 SINE B4 -23 142 10 1 1526 612 351 75 40 chr5 123374156 123374503 -29162756 + ORR1E LTR MaLR 1 359 0 1 1526 320 266 148 59 chr5 123374605 123374662 -29162597 + L1MC3 LINE L1 7403 7457 -328 1 1526 218 0 94 0 chr5 123374662 123374694 -29162565 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1526 320 266 148 59 chr5 123374694 123374892 -29162367 + L1MC3 LINE L1 7458 7681 -104 1 1526 514 243 25 100 chr5 123374944 123375104 -29162155 + B1_Mur2 SINE Alu 2 149 -1 1 1526 1027 94 0 41 chr5 123375112 123375257 -29162002 + B1_Mus1 SINE Alu 2 140 -8 1 1526 256 221 31 0 chr5 123375322 123375389 -29161870 - B1_Mus2 SINE Alu -1 119 46 1 1526 814 158 120 0 chr5 123375408 123375541 -29161718 - B1_Mur3 SINE Alu 0 149 1 1 1526 405 0 0 0 chr5 123376713 123376758 -29160501 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1526 1161 63 7 0 chr5 123376885 123377028 -29160231 + B1_Mus1 SINE Alu 2 145 -3 1 1526 246 347 137 0 chr5 123377443 123377567 -29159692 + B1F SINE Alu 2 142 -7 1 1526 240 157 0 56 chr5 123377571 123377625 -29159634 + G-rich Low_complexity Low_complexity 2 52 0 1 1526 202 158 0 66 chr5 123377641 123377702 -29159557 + GA-rich Low_complexity Low_complexity 4 60 0 1 1526 381 43 0 0 chr5 123378370 123378417 -29158842 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1526 1164 62 7 7 chr5 123378802 123378949 -29158310 + B1_Mus1 SINE Alu 1 147 -1 1 1526 250 328 35 99 chr5 123378949 123378999 -29158260 - B2_Mm2 SINE B2 -62 133 1 1 1526 528 217 0 0 chr5 123378999 123379091 -29158168 - RSINE1 SINE B4 -72 93 2 1 1526 189 0 0 0 chr5 123379210 123379231 -29158028 + (TTGG)n Simple_repeat Simple_repeat 1 21 0 1 1526 516 32 0 0 chr5 123379232 123379294 -29157965 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 1 1526 1250 28 0 14 chr5 123379299 123379446 -29157813 - B1_Mus2 SINE Alu -1 146 2 1 1526 1702 16 0 0 chr5 123379551 123379739 -29157520 + B2_Mm1a SINE B2 1 188 -5 1 1526 463 306 35 29 chr5 123379744 123379908 -29157351 - RSINE1 SINE B4 0 165 3 1 1526 919 131 13 33 chr5 123379937 123380087 -29157172 - B1_Mur4 SINE Alu 0 150 4 1 1526 484 232 49 64 chr5 123380092 123380310 -29156949 - B3A SINE B2 0 216 10 1 1526 549 174 0 0 chr5 123380402 123380494 -29156765 - PB1D9 SINE Alu 0 120 29 1 1526 463 335 72 99 chr5 123380669 123380907 -29156352 + ID_B1 SINE B4 17 251 -41 1 1526 234 278 54 32 chr5 123381253 123381346 -29155913 + B1_Mus2 SINE Alu 16 110 -37 1 1526 991 54 0 8 chr5 123381388 123381519 -29155740 + B1_Mus1 SINE Alu 6 135 -13 1 1526 393 285 35 79 chr5 123381392 123381594 -29155665 + B4A SINE B4 94 286 -6 1 1526 269 224 0 106 chr5 123382293 123382378 -29154881 + ORR1D-int LTR MaLR 519 594 -776 1 1526 258 81 0 0 chr5 123382839 123382876 -29154383 + (TCC)n Simple_repeat Simple_repeat 3 39 0 1 1526 827 210 71 120 chr5 123383211 123383358 -29153901 + B3 SINE B2 2 148 -47 1 1526 243 88 0 0 chr5 123383358 123383392 -29153867 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 1 1526 590 210 71 120 chr5 123383392 123383409 -29153850 + B2_Mm2 SINE B2 149 160 -35 1 1526 234 0 0 0 chr5 123383409 123383435 -29153824 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1 1526 590 210 71 120 chr5 123383435 123383453 -29153806 + B2_Mm2 SINE B2 161 176 -19 1 1526 503 283 17 0 chr5 123383453 123383573 -29153686 + RSINE1 SINE B4 3 124 -41 1 1526 487 350 53 16 chr5 123383703 123383892 -29153367 + ID_B1 SINE B4 29 224 0 1 1526 206 244 12 35 chr5 123383960 123384045 -29153214 + A-rich Low_complexity Low_complexity 2 84 0 1 1526 1527 68 16 0 chr5 123385698 123385890 -29151369 + B2_Mm2 SINE B2 1 195 0 1 1526 1184 68 43 12 chr5 123389317 123389481 -29147778 + B2_Mm2 SINE B2 19 187 -8 1 1526 596 297 72 39 chr5 123389504 123389826 -29147433 + L1MB5 LINE L1 5765 6088 -96 1 1526 1140 71 0 14 chr5 123389826 123389969 -29147290 + B1_Mus1 SINE Alu 3 143 -5 1 1526 593 318 52 55 chr5 123389969 123390048 -29147211 + L1MB5 LINE L1 6089 6165 -19 1 1526 578 239 89 6 chr5 123390635 123390787 -29146472 - ID_B1 SINE B4 0 224 63 1 1526 1192 55 7 0 chr5 123391673 123391819 -29145440 - B1_Mus1 SINE Alu 0 148 2 1 1526 442 286 99 74 chr5 123392040 123392282 -29144977 + MT2B LTR ERVL 31 278 -323 1 1526 743 147 101 0 chr5 123392177 123392306 -29144953 + B1_Mur4 SINE Alu 6 147 -3 1 1526 2022 113 3 3 chr5 123392811 123393095 -29144164 + ORR1A2 LTR MaLR 1 284 -43 1 1526 198 0 0 0 chr5 123394001 123394023 -29143236 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 1 1526 705 219 14 7 chr5 123394406 123394553 -29142706 - B1_Mur1 SINE Alu 0 149 2 1 1526 470 231 22 0 chr5 123394872 123394963 -29142296 + ID_B1 SINE B4 104 196 -28 1 1526 237 309 28 42 chr5 123395201 123395272 -29141987 + ID SINE ID 4 73 -151 1 1526 276 149 0 0 chr5 123395273 123395320 -29141939 + (CAGG)n Simple_repeat Simple_repeat 2 48 0 1 1526 489 47 0 0 chr5 123395320 123395384 -29141875 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1526 377 346 0 0 chr5 123395406 123395513 -29141746 + PB1D10 SINE Alu 2 108 -9 1 1526 594 314 0 12 chr5 123395481 123395642 -29141617 + ID_B1 SINE B4 53 211 -13 1 1526 630 242 45 25 chr5 123395685 123395842 -29141417 + RSINE1 SINE B4 2 161 -4 1 1526 344 306 160 0 chr5 123395997 123396141 -29141118 + MER2 DNA MER2_type 22 188 -157 1 1526 943 135 7 13 chr5 123396150 123396300 -29140959 - B1_Mur3 SINE Alu 0 149 1 1 1526 1460 63 5 16 chr5 123396431 123396624 -29140635 - B2_Mm1t SINE B2 -1 192 2 1 1526 1205 68 0 0 chr5 123396626 123396773 -29140486 - B1_Mus1 SINE Alu 0 148 2 1 1526 207 0 0 0 chr5 123396879 123396902 -29140357 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1526 265 237 13 0 chr5 123396929 123397005 -29140254 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1526 226 204 41 0 chr5 123397016 123397065 -29140194 - L3 LINE CR1 -543 3946 3896 1 1526 1260 170 9 26 chr5 123397224 123397453 -29139806 - URR1A DNA MER1_type 0 226 2 1 1526 1054 119 50 0 chr5 123398548 123398707 -29138552 + B2_Mm1t SINE B2 1 167 -26 1 1526 290 101 475 20 chr5 123398776 123398877 -29138382 + B2_Mm2 SINE B2 47 193 -2 1 1526 465 268 47 104 chr5 123399794 123400073 -29137186 + L1MB7 LINE L1 5912 6174 -10 1 1526 23 33 0 0 chr5 123401122 123401152 -29136107 + AT_rich Low_complexity Low_complexity 1 30 0 1 1526 182 250 210 12 chr5 123402775 123402856 -29134403 + MIR SINE MIR 22 118 -90 1 1526 937 140 0 29 chr5 123404049 123404189 -29133070 - B1_Mur2 SINE Alu -13 136 1 1 1526 424 245 85 0 chr5 123404236 123404342 -29132917 + PB1D10 SINE Alu 3 117 0 1 1526 207 0 0 0 chr5 123405024 123405047 -29132212 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1526 253 312 13 25 chr5 123405289 123405368 -29131891 + ID4 SINE ID 2 79 -4 1 1526 218 319 41 31 chr5 123405368 123405381 -29131878 + ID_B1 SINE B4 2 94 -130 1 1526 215 217 0 21 chr5 123405381 123405428 -29131831 + ID SINE ID 1 46 -178 1 1526 608 235 51 40 chr5 123405454 123405631 -29131628 + B3A SINE B2 4 182 -16 1 1526 272 231 140 47 chr5 123405662 123405812 -29131447 + RLTR21 LTR ERVK 1084 1247 -325 1 1526 31 0 0 0 chr5 123405812 123405843 -29131416 + AT_rich Low_complexity Low_complexity 1 31 0 1 1526 533 78 0 49 chr5 123405851 123405932 -29131327 + B1_Mm SINE Alu 71 147 0 1 1526 198 0 0 0 chr5 123405932 123405954 -29131305 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1526 513 311 68 0 chr5 123405956 123406088 -29131171 + ID_B1 SINE B4 80 220 -4 1 1526 431 256 233 60 chr5 123406128 123406461 -29130798 + MLT1F1 LTR MaLR 65 490 -79 1 1526 213 119 0 0 chr5 123407002 123407044 -29130215 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1526 460 277 30 85 chr5 123408011 123408212 -29129047 + B4A SINE B4 5 194 -98 1 1526 197 33 33 0 chr5 123408331 123408361 -29128898 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1526 988 92 42 0 chr5 123408386 123408528 -29128731 - B1_Mus1 SINE Alu 0 148 1 1 1526 216 0 0 0 chr5 123408622 123408646 -29128613 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 1 1526 822 115 76 15 chr5 123408956 123409088 -29128171 + B1_Mur4 SINE Alu 10 149 -1 1 1526 315 252 214 64 chr5 123410028 123410181 -29127078 + B3 SINE B2 8 184 -32 1 1526 1266 78 0 0 chr5 123410181 123410568 -29126691 + (CA)n Simple_repeat Simple_repeat 1 387 0 1 1526 615 189 18 9 chr5 123411740 123411850 -29125409 + MTC LTR MaLR 1 111 -310 1 1526 845 171 92 0 chr5 123411850 123412002 -29125257 - URR1B DNA MER1_type 0 225 60 1 1526 1430 165 71 34 chr5 123412008 123412332 -29124927 + MTC LTR MaLR 84 380 -41 1 1526 1287 87 16 27 chr5 123412332 123412520 -29124739 - B2_Mm1t SINE B2 -7 186 1 1 1526 1430 158 80 29 chr5 123412520 123412563 -29124696 + MTC LTR MaLR 381 421 0 1 1526 1368 90 21 0 chr5 123412845 123413034 -29124225 + B2_Mm2 SINE B2 2 194 -1 1 1526 520 92 35 0 chr5 123413118 123413205 -29124054 + (GAAA)n Simple_repeat Simple_repeat 4 93 0 1 1526 554 286 91 25 chr5 123413217 123413414 -29123845 + B3 SINE B2 7 216 0 1 1526 1305 91 11 0 chr5 123413444 123413620 -29123639 - B2_Mm1t SINE B2 -14 179 2 1 1526 889 289 11 73 chr5 123413655 123413942 -29123317 + B4 SINE B4 24 292 0 1 1526 597 269 35 74 chr5 123413976 123414205 -29123054 + ID_B1 SINE B4 1 220 -4 1 1526 1647 254 13 63 chr5 123414459 123414934 -29122325 + RLTR16 LTR ERVK 1 451 -54 1 1526 387 0 0 0 chr5 123415258 123415301 -29121958 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1526 329 269 25 119 chr5 123415925 123416043 -29121216 - PB1D7 SINE Alu -1 119 13 1 1526 1197 135 5 10 chr5 123416062 123416084 -29121175 - B2_Mm1t SINE B2 0 193 173 1 1526 973 104 37 0 chr5 123416084 123416219 -29121040 - B1_Mus2 SINE Alu -7 140 1 1 1526 1197 135 5 10 chr5 123416219 123416390 -29120869 - B2_Mm1t SINE B2 -21 172 1 1 1526 294 260 26 80 chr5 123416398 123416511 -29120748 - PB1D10 SINE Alu -7 110 4 1 1526 252 143 0 0 chr5 123416564 123416606 -29120653 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1526 247 190 172 0 chr5 123416606 123416664 -29120595 - B1_Mur1 SINE Alu -12 137 70 1 1526 647 173 82 0 chr5 123416672 123416782 -29120477 + PB1D9 SINE Alu 2 120 0 1 1526 455 189 0 32 chr5 123416832 123416958 -29120301 + C-rich Low_complexity Low_complexity 4 125 0 1 1526 376 278 44 0 chr5 123416958 123417048 -29120211 - PB1D9 SINE Alu 0 120 27 1 1526 25 0 0 0 chr5 123417050 123417075 -29120184 + AT_rich Low_complexity Low_complexity 1 25 0 1 1526 808 39 19 0 chr5 123417095 123417199 -29120060 + B1_Mus2 SINE Alu 30 135 -12 1 1526 387 301 0 19 chr5 123417727 123417832 -29119427 + MER58B DNA MER1_type 239 341 0 1 1526 197 296 56 0 chr5 123418293 123418347 -29118912 - MIR SINE MIR -157 105 49 1 1526 268 226 277 11 chr5 123418960 123419054 -29118205 + PB1D9 SINE Alu 1 119 -1 1 1526 534 198 0 0 chr5 123419144 123419230 -29118029 + B1_Mus1 SINE Alu 26 111 -37 1 1526 424 174 160 20 chr5 123419671 123419771 -29117488 + PB1D7 SINE Alu 1 114 -6 1 1526 314 279 78 54 chr5 123420436 123420565 -29116694 + MIRc SINE MIR 54 185 -83 1 1526 374 254 185 55 chr5 123420818 123420964 -29116295 + RSINE1 SINE B4 1 165 0 1 1526 299 301 0 2 chr5 123421128 123421204 -29116055 + B1F1 SINE Alu 25 99 -21 1 1526 184 294 101 45 chr5 123421227 123421316 -29115943 + MIRc SINE MIR 42 135 -133 1 1526 283 272 0 12 chr5 123421420 123421502 -29115757 + BC1_Mm scRNA scRNA 8 88 -64 1 1526 640 293 87 39 chr5 123421567 123421798 -29115461 + Tigger5 DNA MER2_type 2 243 -2163 1 1526 530 183 235 8 chr5 123422595 123422727 -29114532 - RSINE1 SINE B4 -2 163 2 1 1526 238 312 25 82 chr5 123422749 123422766 -29114493 + MT2B LTR ERVL 149 158 -443 1 1526 292 354 18 9 chr5 123422766 123422880 -29114379 + PB1D10 SINE Alu 3 117 0 1 1526 927 109 0 0 chr5 123422899 123423037 -29114222 + (GGGA)n Simple_repeat Simple_repeat 4 141 0 1 1526 422 171 0 0 chr5 123423043 123423113 -29114146 + B1_Mus2 SINE Alu 9 78 -69 1 1526 210 71 0 0 chr5 123423169 123423197 -29114062 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 1 1526 234 250 0 0 chr5 123423306 123423354 -29113905 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1526 232 283 17 0 chr5 123424010 123424070 -29113189 + MER2 DNA MER2_type 18 78 -267 1 1526 369 290 40 0 chr5 123424098 123424198 -29113061 + PB1D7 SINE Alu 6 109 -11 1 1526 399 329 11 40 chr5 123424296 123424473 -29112786 + MER2 DNA MER2_type 87 258 -87 1 1526 180 0 0 0 chr5 123424475 123424495 -29112764 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1526 259 131 16 16 chr5 123424750 123424812 -29112447 - B2_Mm1t SINE B2 0 193 132 1 1526 1030 71 21 0 chr5 123424805 123424945 -29112314 + B2_Mm2 SINE B2 53 195 0 1 1526 1186 68 0 0 chr5 123424951 123425097 -29112162 + B1_Mus2 SINE Alu 2 147 0 1 1526 596 264 117 15 chr5 123425153 123425349 -29111910 - B3 SINE B2 0 216 1 1 1526 734 120 23 53 chr5 123425396 123425528 -29111731 - B1_Mur4 SINE Alu -20 130 3 1 1526 390 302 31 87 chr5 123425528 123425586 -29111673 - B4 SINE B4 -65 212 43 1 1526 317 312 0 86 chr5 123425537 123425642 -29111617 - PB1D10 SINE Alu -20 97 2 1 1526 472 269 29 29 chr5 123425833 123425971 -29111288 + B1F SINE Alu 1 138 -11 1 1526 192 40 0 0 chr5 123425971 123425996 -29111263 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1526 1142 88 0 0 chr5 123426258 123426405 -29110854 + B1_Mus2 SINE Alu 1 147 0 1 1526 327 284 51 40 chr5 123426406 123426582 -29110677 + L1ME3B LINE L1 4942 5119 -1027 1 1526 294 289 57 66 chr5 123426611 123426733 -29110526 + PB1 SINE Alu 5 125 -2 1 1526 844 189 0 33 chr5 123426758 123426911 -29110348 - B1_Mur1 SINE Alu 0 149 2 1 1526 409 234 63 115 chr5 123426911 123426978 -29110281 - MT2B LTR ERVL -451 150 93 1 1526 241 244 0 0 chr5 123427263 123427304 -29109955 - B4 SINE B4 -169 123 83 1 1526 335 306 81 38 chr5 123427304 123427471 -29109788 + L1ME3B LINE L1 5727 5892 -281 1 1526 1339 114 5 5 chr5 123427471 123427665 -29109594 + B2_Mm2 SINE B2 1 194 -1 1 1526 335 304 80 25 chr5 123427665 123427714 -29109545 + L1ME3B LINE L1 5893 5947 -293 1 1526 1294 34 0 0 chr5 123427820 123427967 -29109292 + B1_Mus2 SINE Alu 1 147 0 1 1526 379 303 28 0 chr5 123428043 123428152 -29109107 + PB1 SINE Alu 13 124 -3 1 1526 1130 54 0 33 chr5 123428164 123428317 -29108942 + B1_Mus1 SINE Alu 1 148 0 1 1526 341 169 84 0 chr5 123428452 123428523 -29108736 - HAL1-3A_ME LINE L1 -808 2050 1974 1 1526 473 294 186 28 chr5 123428566 123428818 -29108441 - B4A SINE B4 0 292 1 1 1526 266 270 93 86 chr5 123429203 123429365 -29107894 + MLT1K LTR MaLR 406 568 -27 1 1526 601 160 122 0 chr5 123429734 123429865 -29107394 + B1_Mur4 SINE Alu 1 147 -3 1 1526 253 304 14 0 chr5 123429882 123429951 -29107308 + PB1D10 SINE Alu 48 117 0 1 1526 286 270 0 26 chr5 123430091 123430167 -29107092 + PB1D10 SINE Alu 43 116 -1 1 1526 1166 81 14 0 chr5 123430171 123430319 -29106940 + B1_Mur4 SINE Alu 1 150 0 1 1526 359 268 17 67 chr5 123430505 123430625 -29106634 + MLT1A0 LTR MaLR 15 128 -237 1 1526 321 220 25 49 chr5 123430770 123430877 -29106382 + MTEb LTR MaLR 267 375 -4 1 1526 392 276 78 7 chr5 123430888 123431030 -29106229 + L1M4 LINE L1 5648 5799 -379 1 1526 253 292 31 0 chr5 123431183 123431248 -29106011 + ID SINE ID 15 81 -143 1 1526 189 211 92 82 chr5 123431309 123431407 -29105852 + L2 LINE L2 2827 2925 -494 1 1526 819 203 56 6 chr5 123431555 123431733 -29105526 - B3A SINE B2 -10 188 2 1 1526 504 48 0 0 chr5 123431865 123431928 -29105331 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1526 1125 77 0 0 chr5 123431931 123432074 -29105185 - B1_Mus1 SINE Alu 0 148 6 1 1526 24 32 0 0 chr5 123432377 123432408 -29104851 + GC_rich Low_complexity Low_complexity 1 31 0 1 1526 229 136 0 63 chr5 123432629 123432692 -29104567 + CT-rich Low_complexity Low_complexity 1 59 0 1 1526 359 248 0 1 chr5 123433236 123433310 -29103949 + PB1D10 SINE Alu 38 110 -7 1 1526 1187 52 0 0 chr5 123433310 123433446 -29103813 + B1_Mm SINE Alu 1 136 -11 1 1526 390 42 0 0 chr5 123433446 123433494 -29103765 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 1 1526 212 343 27 108 chr5 123433494 123433529 -29103730 + B1_Mur3 SINE Alu 107 138 -11 1 1526 542 214 0 10 chr5 123433535 123433639 -29103620 + ID_B1 SINE B4 93 195 -29 1 1526 334 255 0 109 chr5 123433639 123433654 -29103605 + PB1D10 SINE Alu 12 117 0 1 1526 565 151 108 0 chr5 123433684 123433777 -29103482 + B1_Mur1 SINE Alu 11 113 -36 1 1526 1072 65 36 0 chr5 123436423 123436561 -29100698 + B1_Mm SINE Alu 5 147 0 1 1526 180 0 0 0 chr5 123437510 123437530 -29099729 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 1 1526 226 227 0 0 chr5 123439411 123439455 -29097804 + GA-rich Low_complexity Low_complexity 3 46 0 1 1526 242 273 0 15 chr5 123440855 123440922 -29096337 + ID2 SINE ID 4 69 -14 1 1526 482 215 0 11 chr5 123442023 123442117 -29095142 - B1F2 SINE Alu -31 118 26 1 1526 351 285 76 46 chr5 123442117 123442169 -29095090 - ID_B1 SINE B4 -95 197 69 1 1526 238 222 156 16 chr5 123442989 123443053 -29094206 + ID_B1 SINE B4 81 153 -71 1 1526 965 71 71 0 chr5 123443250 123443377 -29093882 - B1_Mus1 SINE Alu -12 136 1 1 1526 802 156 23 0 chr5 123443377 123443505 -29093754 + B1_Mur4 SINE Alu 14 144 -6 1 1526 288 328 54 81 chr5 123443378 123443527 -29093732 + B4A SINE B4 99 243 -49 1 1526 1269 77 16 52 chr5 123444069 123444262 -29092997 - B2_Mm2 SINE B2 -7 188 3 1 1526 379 283 94 85 chr5 123445971 123446101 -29091158 - MER2 DNA MER2_type -12 333 204 1 1526 1413 59 32 21 chr5 123446101 123446291 -29090968 - B2_Mm2 SINE B2 -3 192 1 1 1526 379 283 94 85 chr5 123446291 123446384 -29090875 - MER2 DNA MER2_type -142 203 108 1 1526 354 217 5 0 chr5 123446427 123446505 -29090754 - ID4_ SINE ID -72 80 1 1 1526 409 259 118 71 chr5 123446505 123446616 -29090643 - ID_B1 SINE B4 -2 222 1 1 1526 657 109 20 0 chr5 123446616 123446717 -29090542 - BC1_Mm scRNA scRNA -49 103 1 1 1526 555 297 25 31 chr5 123446752 123446915 -29090344 - RSINE1 SINE B4 -2 163 2 1 1526 368 287 112 37 chr5 123446929 123447063 -29090196 - B1F1 SINE Alu -5 144 1 1 1526 566 274 116 66 chr5 123447173 123447431 -29089828 + B4A SINE B4 1 271 -21 1 1526 241 384 7 36 chr5 123447533 123447671 -29089588 - ID_B1 SINE B4 -83 141 8 1 1526 366 190 148 41 chr5 123448192 123448354 -29088905 + B3A SINE B2 1 191 -4 1 1526 268 232 0 79 chr5 123448349 123448438 -29088821 + MT2B2 LTR ERVL 155 236 -348 1 1526 455 220 55 0 chr5 123448373 123448464 -29088795 + PB1D9 SINE Alu 12 107 -13 1 1526 258 105 0 0 chr5 123448464 123448502 -29088757 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 1 1526 31 0 0 0 chr5 123448600 123448631 -29088628 + AT_rich Low_complexity Low_complexity 1 31 0 1 1526 434 327 43 0 chr5 123448881 123449043 -29088216 + MIRb SINE MIR 80 248 -20 1 1526 928 226 37 42 chr5 123449343 123449560 -29087699 + B3 SINE B2 1 216 0 1 1526 826 146 0 14 chr5 123449568 123449707 -29087552 + B1_Mus2 SINE Alu 11 147 0 1 1526 296 299 0 22 chr5 123449741 123449830 -29087429 + B1F2 SINE Alu 2 88 -61 1 1526 5187 71 10 4 chr5 123449835 123450531 -29086728 - MTA_Mm-int LTR MaLR -398 700 1 1 1526 3437 38 2 0 chr5 123450531 123450926 -29086333 - MTA_Mm LTR MaLR 0 396 1 1 1526 267 115 0 0 chr5 123450928 123450970 -29086289 + B1F SINE Alu 92 133 -16 1 1526 274 183 280 0 chr5 123452055 123452148 -29085111 - B3 SINE B2 -4 212 94 1 1526 506 259 27 75 chr5 123452247 123452393 -29084866 - B1F SINE Alu -1 148 10 1 1526 267 79 0 0 chr5 123452529 123452567 -29084692 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1526 1092 295 33 27 chr5 123452578 123452909 -29084350 + MER21B LTR ERV1 1 333 -530 1 1526 285 313 29 145 chr5 123452967 123453139 -29084120 + B4A SINE B4 68 219 -73 1 1526 782 160 0 77 chr5 123452996 123453152 -29084107 + B1_Mur3 SINE Alu 6 149 0 1 1526 469 279 20 41 chr5 123453528 123453674 -29083585 - B1F SINE Alu -2 147 5 1 1526 278 253 25 12 chr5 123453701 123453781 -29083478 - ID4_ SINE ID -1 82 2 1 1526 396 250 15 138 chr5 123453783 123453913 -29083346 + MER21B LTR ERV1 695 808 -55 1 1526 1183 127 77 0 chr5 123454167 123454348 -29082911 + B2_Mm2 SINE B2 1 195 0 1 1526 815 217 25 75 chr5 123454348 123454507 -29082752 + B3A SINE B2 6 160 -38 1 1526 210 37 0 0 chr5 123454507 123454534 -29082725 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1526 722 217 25 75 chr5 123454534 123454549 -29082710 + B2_Mm2 SINE B2 156 171 -24 1 1526 554 264 36 117 chr5 123454549 123454772 -29082487 + B3 SINE B2 2 206 -10 1 1526 722 217 25 75 chr5 123454772 123454795 -29082464 + B2_Mm2 SINE B2 172 194 -1 1 1526 1569 48 0 5 chr5 123454799 123454989 -29082270 + B2_Mm1a SINE B2 3 191 -2 1 1526 363 342 80 13 chr5 123455231 123455382 -29081877 + RSINE1 SINE B4 1 161 -4 1 1526 843 108 7 61 chr5 123455407 123455555 -29081704 + B1_Mur4 SINE Alu 10 149 -1 1 1526 441 192 54 12 chr5 123455557 123455655 -29081604 - B1_Mur1 SINE Alu -13 136 26 1 1526 211 205 0 0 chr5 123455674 123455713 -29081546 + GA-rich Low_complexity Low_complexity 2 40 0 1 1526 799 299 23 30 chr5 123455911 123456173 -29081086 + B4A SINE B4 5 264 -28 1 1526 234 0 0 0 chr5 123456206 123456232 -29081027 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1526 666 168 42 8 chr5 123456919 123457039 -29080220 - B1_Mus1 SINE Alu 0 148 25 1 1526 228 147 0 0 chr5 123457095 123457129 -29080130 + B1_Mus1 SINE Alu 4 37 -111 1 1526 422 299 50 25 chr5 123457126 123457246 -29080013 + B3A SINE B2 46 168 -30 1 1526 261 165 270 112 chr5 123457294 123457383 -29079876 + B1_Mur2 SINE Alu 13 115 -34 1 1526 549 259 50 14 chr5 123457628 123457769 -29079490 + ID_B1 SINE B4 70 215 -9 1 1526 343 287 35 0 chr5 123457781 123457868 -29079391 - MLT1A LTR MaLR -109 265 176 1 1526 630 279 91 63 chr5 123457996 123458371 -29078888 + MLT1D LTR MaLR 82 501 -4 1 1526 447 164 221 0 chr5 123458406 123458510 -29078749 - B1_Mur2 SINE Alu -5 144 18 1 1526 185 258 75 15 chr5 123458705 123458772 -29078487 + L2a LINE L2 3300 3370 -56 1 1526 180 0 0 0 chr5 123459144 123459164 -29078095 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1526 324 298 121 8 chr5 123459567 123459699 -29077560 + LTR33A_ LTR ERVL 3 149 -382 1 1526 197 350 130 40 chr5 123459953 123460176 -29077083 - MIRb SINE MIR -3 265 23 1 1526 435 235 29 10 chr5 123460338 123460441 -29076818 - PB1D10 SINE Alu -8 109 5 1 1526 257 279 104 98 chr5 123460446 123460629 -29076630 - MLT1D LTR MaLR -60 445 262 1 1526 230 316 0 48 chr5 123460714 123460797 -29076462 - B1_Mus1 SINE Alu -59 89 11 1 1526 212 342 0 25 chr5 123460725 123460806 -29076453 - B4A SINE B4 -128 164 86 1 1526 1030 208 34 5 chr5 123460918 123461126 -29076133 - B3 SINE B2 -2 214 1 1 1526 30 0 0 0 chr5 123461156 123461186 -29076073 + AT_rich Low_complexity Low_complexity 1 30 0 1 1526 203 208 18 36 chr5 123461338 123461393 -29075866 + MIRm SINE MIR 124 177 -99 1 1526 304 355 28 0 chr5 123461678 123461785 -29075474 - L1MEe LINE L1 -4044 810 701 1 1526 205 88 29 0 chr5 123462107 123462141 -29075118 + (TTTTTA)n Simple_repeat Simple_repeat 4 38 0 1 1526 278 26 0 25 chr5 123462323 123462363 -29074896 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1526 186 43 0 0 chr5 123462427 123462450 -29074809 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1526 1154 62 7 0 chr5 123462450 123462594 -29074665 - B1_Mus2 SINE Alu -2 145 1 1 1526 1397 187 163 37 chr5 123462761 123463099 -29074160 - MTD LTR MaLR -19 400 18 1 1526 264 30 0 0 chr5 123463099 123463132 -29074127 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1 1526 1397 187 163 37 chr5 123463132 123463148 -29074111 - MTD LTR MaLR -402 17 1 1 1526 207 0 0 0 chr5 123463379 123463402 -29073857 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1526 1169 55 7 40 chr5 123463410 123463561 -29073698 - B1_Mus1 SINE Alu 0 148 3 1 1526 511 128 91 50 chr5 123463562 123463661 -29073598 - PB1D9 SINE Alu -12 108 6 1 1526 353 134 21 128 chr5 123463582 123463676 -29073583 - MT2B LTR ERVL -365 236 153 1 1526 253 316 0 12 chr5 123463888 123463968 -29073291 - L2a LINE L2 0 3426 3348 1 1526 250 192 35 124 chr5 123464190 123464303 -29072956 + MT2B LTR ERVL 163 265 -336 1 1526 555 221 105 16 chr5 123464208 123464332 -29072927 + B1_Mur1 SINE Alu 14 148 -1 1 1526 185 279 16 0 chr5 123464450 123464511 -29072748 + L2a LINE L2 3286 3347 -79 1 1526 207 316 18 0 chr5 123464640 123464697 -29072562 + L2a LINE L2 3360 3417 -9 1 1526 31 0 0 0 chr5 123465188 123465219 -29072040 + GC_rich Low_complexity Low_complexity 1 31 0 1 1526 213 39 0 0 chr5 123466456 123466482 -29070777 + (C)n Simple_repeat Simple_repeat 1 26 0 1 1526 238 116 21 104 chr5 123466680 123466728 -29070531 + MIRm SINE MIR 66 109 -167 1 1526 567 66 0 0 chr5 123466729 123466805 -29070454 + (TC)n Simple_repeat Simple_repeat 1 76 0 1 1526 422 240 0 35 chr5 123466911 123467026 -29070233 + B1F2 SINE Alu 21 125 -24 1 1526 891 134 21 21 chr5 123468158 123468303 -29068956 + B1_Mur3 SINE Alu 5 149 0 1 1526 217 321 171 12 chr5 123468967 123469131 -29068128 + MIR SINE MIR 44 233 -29 1 1526 251 270 13 13 chr5 123469324 123469399 -29067860 + B4A SINE B4 76 150 -142 1 1526 447 216 94 8 chr5 123469342 123469459 -29067800 + B1_Mur2 SINE Alu 10 136 -13 1 1527 965 69 18 127 chr5 123470226 123470242 -29067017 - B1_Mus1 SINE Alu 0 148 140 1 1527 206 32 0 31 chr5 123470242 123470274 -29066985 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1527 965 69 18 127 chr5 123470274 123470423 -29066836 - B1_Mus1 SINE Alu -9 139 1 1 1527 21 0 0 47 chr5 123470768 123470781 -29066478 + AT_rich Low_complexity Low_complexity 1 13 0 1 1527 1196 55 0 7 chr5 123470781 123470929 -29066330 + B1_Mm SINE Alu 1 147 0 1 1527 21 0 0 47 chr5 123470929 123470946 -29066313 + AT_rich Low_complexity Low_complexity 1 17 0 1 1527 302 0 0 26 chr5 123470946 123470985 -29066274 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1527 21 0 0 47 chr5 123470985 123470996 -29066263 + AT_rich Low_complexity Low_complexity 1 11 0 1 1527 577 193 17 26 chr5 123471009 123471126 -29066133 - PB1D9 SINE Alu -2 118 3 1 1527 350 168 175 21 chr5 123471227 123471324 -29065935 + PB1D9 SINE Alu 9 120 0 1 1527 563 248 124 0 chr5 123471327 123471456 -29065803 + ID_B1 SINE B4 80 224 0 1 1527 242 254 164 0 chr5 123471516 123471583 -29065676 + ID4 SINE ID 6 83 0 1 1527 292 307 10 53 chr5 123471562 123471685 -29065574 + PB1D10 SINE Alu 27 145 -4 1 1527 2004 76 46 122 chr5 123471719 123471926 -29065333 - ORR1A2 LTR MaLR -8 319 98 1 1527 1248 126 11 5 chr5 123471926 123472110 -29065149 - B2_Mm1t SINE B2 -6 187 3 1 1527 270 0 0 0 chr5 123472120 123472150 -29065109 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1527 1097 82 0 0 chr5 123472159 123472294 -29064965 - B1_Mus1 SINE Alu -12 136 2 1 1527 2004 76 46 122 chr5 123472294 123472410 -29064849 - ORR1A2 LTR MaLR -230 97 1 1 1527 711 208 118 12 chr5 123472411 123472572 -29064687 + B3 SINE B2 39 216 0 1 1527 961 159 7 0 chr5 123472756 123472901 -29064358 + B1_Mur2 SINE Alu 3 148 -1 1 1527 198 0 0 0 chr5 123473399 123473421 -29063838 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 1527 1188 62 0 0 chr5 123473421 123473566 -29063693 - B1_Mus2 SINE Alu -1 146 2 1 1527 1166 94 0 0 chr5 123473957 123474106 -29063153 - B1_Mur3 SINE Alu 0 149 1 1 1527 21 0 0 0 chr5 123474106 123474127 -29063132 + AT_rich Low_complexity Low_complexity 1 21 0 1 1527 696 164 6 184 chr5 123474128 123474307 -29062952 - B1_Mur4 SINE Alu -2 148 2 1 1527 1205 55 0 0 chr5 123474780 123474926 -29062333 - B1_Mm SINE Alu 0 147 2 1 1527 835 148 7 36 chr5 123474927 123475067 -29062192 - B1_Mur4 SINE Alu -13 137 2 1 1527 200 270 53 13 chr5 123475528 123475603 -29061656 - MIRb SINE MIR -8 260 183 1 1527 182 175 23 70 chr5 123475719 123475762 -29061497 + MIRc SINE MIR 108 148 -120 1 1527 215 205 0 0 chr5 123475776 123475815 -29061444 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1527 943 95 66 0 chr5 123475896 123476033 -29061226 + B1_Mus2 SINE Alu 2 147 0 1 1527 286 299 115 27 chr5 123476071 123476219 -29061040 - MIR SINE MIR -32 230 70 1 1527 766 252 22 31 chr5 123477187 123477412 -29059847 - ID_B1 SINE B4 -1 223 1 1 1527 946 108 28 123 chr5 123477896 123478107 -29059152 + B2_Mm2 SINE B2 2 192 -3 1 1527 869 145 7 0 chr5 123478152 123478290 -29058969 - B1_Mus2 SINE Alu 0 147 9 1 1527 494 289 69 82 chr5 123478341 123478448 -29058811 + RSINE1 SINE B4 2 190 -102 1 1527 616 122 0 58 chr5 123478448 123478552 -29058707 + B1_Mus2 SINE Alu 44 141 -6 1 1527 494 289 69 82 chr5 123478552 123478597 -29058662 + RSINE1 SINE B4 191 273 -19 1 1527 185 309 131 20 chr5 123478658 123478757 -29058502 - MIRb SINE MIR -77 191 82 1 1527 784 111 26 0 chr5 123478851 123478968 -29058291 + PB1D9 SINE Alu 1 120 0 1 1527 222 37 0 0 chr5 123480033 123480060 -29057199 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1527 220 288 152 0 chr5 123480345 123480411 -29056848 - ID4_ SINE ID -6 77 2 1 1527 471 279 48 48 chr5 123480474 123480640 -29056619 + MER82 DNA MER2_type 2 167 -486 1 1527 923 239 6 6 chr5 123480667 123480848 -29056411 + B3 SINE B2 2 182 -34 1 1527 240 35 0 0 chr5 123480864 123480893 -29056366 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1527 690 180 88 24 chr5 123480907 123481032 -29056227 - B1_Mus1 SINE Alu -13 135 3 1 1527 21 0 0 0 chr5 123481036 123481057 -29056202 + AT_rich Low_complexity Low_complexity 1 21 0 1 1527 512 104 0 0 chr5 123481071 123481148 -29056111 + B1_Mus2 SINE Alu 70 146 -1 1 1527 813 141 107 30 chr5 123481181 123481349 -29055910 + B2_Mm2 SINE B2 1 181 -14 1 1527 748 227 117 16 chr5 123481375 123481563 -29055696 + B3 SINE B2 1 207 -9 1 1527 542 226 56 152 chr5 123481591 123481637 -29055622 + B3A SINE B2 8 45 -153 1 1527 1171 68 14 0 chr5 123481637 123481783 -29055476 - B1_Mus1 SINE Alu 0 148 1 1 1527 542 226 56 152 chr5 123481783 123481934 -29055325 + B3A SINE B2 46 186 -12 1 1527 238 278 86 32 chr5 123481992 123482085 -29055174 - PB1D10 SINE Alu -7 110 13 1 1527 358 276 88 25 chr5 123482010 123482170 -29055089 - ID_B1 SINE B4 -53 171 2 1 1527 590 321 19 5 chr5 123482368 123482584 -29054675 - ID_B1 SINE B4 -5 219 1 1 1527 548 292 30 70 chr5 123482593 123482792 -29054467 - B3 SINE B2 -3 213 23 1 1527 1090 85 0 0 chr5 123482766 123482907 -29054352 + B1_Mus1 SINE Alu 6 146 -2 1 1527 272 183 0 32 chr5 123482917 123482979 -29054280 - B3 SINE B2 -155 61 2 1 1527 310 317 48 40 chr5 123483000 123483125 -29054134 - L1MC4 LINE L1 -478 7564 7439 1 1527 1416 90 11 0 chr5 123483239 123483427 -29053832 - B2_Mm1t SINE B2 -3 190 1 1 1527 411 302 75 138 chr5 123483546 123483907 -29053352 - MTEa LTR MaLR -40 339 2 1 1527 292 255 204 7 chr5 123483981 123484123 -29053136 + MER102c DNA MER1_type 109 278 -53 1 1527 558 186 79 9 chr5 123484177 123484291 -29052968 + B1_Mur4 SINE Alu 1 122 -28 1 1527 226 297 149 32 chr5 123484294 123484388 -29052871 + RSINE1 SINE B4 44 148 -17 1 1527 180 0 0 0 chr5 123484393 123484413 -29052846 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1527 188 312 9 123 chr5 123484818 123484924 -29052335 - MER5A DNA MER1_type 0 189 96 1 1527 323 250 150 0 chr5 123485138 123485218 -29052041 - B1_Mur2 SINE Alu -55 94 3 1 1527 527 256 16 0 chr5 123485342 123485463 -29051796 + B3 SINE B2 2 124 -92 1 1527 333 0 0 0 chr5 123485485 123485522 -29051737 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1527 229 360 22 34 chr5 123485846 123485935 -29051324 - B1F SINE Alu -61 88 1 1 1527 336 77 0 0 chr5 123486015 123486067 -29051192 + (A)n Simple_repeat Simple_repeat 1 52 0 1 1527 217 194 0 0 chr5 123486073 123486109 -29051150 - B1_Mus1 SINE Alu -103 45 10 1 1527 226 103 0 0 chr5 123486081 123486110 -29051149 - B1_Mur4 SINE Alu -113 37 9 1 1527 680 89 10 0 chr5 123486121 123486222 -29051037 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 1 1527 584 212 106 0 chr5 123486222 123486354 -29050905 - B1_Mur2 SINE Alu 0 149 4 1 1527 1171 62 0 7 chr5 123487485 123487632 -29049627 - B1_Mus2 SINE Alu -1 146 1 1 1527 599 205 73 8 chr5 123488062 123488185 -29049074 + B1_Mus2 SINE Alu 2 132 -15 1 1527 180 0 0 0 chr5 123488228 123488248 -29049011 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1527 387 185 108 24 chr5 123488368 123488451 -29048808 - B1_Mus1 SINE Alu -34 114 25 1 1527 231 247 89 56 chr5 123488461 123488551 -29048708 - PB1D7 SINE Alu 0 120 28 1 1527 578 214 15 8 chr5 123488635 123488767 -29048492 - RSINE1 SINE B4 -30 135 3 1 1527 210 154 0 0 chr5 123488773 123488812 -29048447 + A-rich Low_complexity Low_complexity 4 42 0 1 1527 1396 30 0 0 chr5 123490065 123490225 -29047034 + B2_Mm1a SINE B2 1 160 -33 1 1527 243 79 0 0 chr5 123490225 123490263 -29046996 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 1527 186 274 0 88 chr5 123490273 123490341 -29046918 + MIRc SINE MIR 67 128 -140 1 1527 306 107 0 0 chr5 123490463 123490519 -29046740 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 1 1527 261 0 0 0 chr5 123490639 123490668 -29046591 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1527 311 181 26 65 chr5 123491467 123491544 -29045715 + PB1D10 SINE Alu 44 117 0 1 1527 219 36 0 0 chr5 123491601 123491629 -29045630 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1 1527 920 109 66 0 chr5 123491694 123491831 -29045428 + B1_Mus1 SINE Alu 1 146 -2 1 1527 243 0 0 0 chr5 123491831 123491858 -29045401 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1527 622 226 126 0 chr5 123491900 123492099 -29045160 + L1MA9 LINE L1 5874 6097 -215 1 1527 465 288 28 21 chr5 123492109 123492251 -29045008 + RSINE1 SINE B4 1 143 -22 1 1527 293 274 13 27 chr5 123492289 123492364 -29044895 - ID SINE ID -143 81 8 1 1527 1145 176 66 155 chr5 123493025 123493203 -29044056 + MTD LTR MaLR 23 208 -211 1 1527 475 184 405 7 chr5 123493203 123493351 -29043908 + B3 SINE B2 3 209 -7 1 1527 1145 176 66 155 chr5 123493351 123493475 -29043784 + MTD LTR MaLR 209 298 -121 1 1527 538 77 248 33 chr5 123493476 123493597 -29043662 - B2_Mm2 SINE B2 -2 193 47 1 1527 459 200 91 53 chr5 123493594 123493610 -29043649 + MTD LTR MaLR 240 257 -122 1 1527 1344 79 17 0 chr5 123493610 123493787 -29043472 - B2_Mm2 SINE B2 -14 181 2 1 1527 560 200 89 53 chr5 123493787 123493909 -29043350 + MTD LTR MaLR 258 419 0 1 1527 23 0 0 0 chr5 123493936 123493959 -29043300 + AT_rich Low_complexity Low_complexity 1 23 0 1 1527 708 275 10 36 chr5 123493974 123494126 -29043133 - B3A SINE B2 -6 192 45 1 1527 719 228 14 14 chr5 123494126 123494273 -29042986 - B1_Mur1 SINE Alu 0 149 3 1 1527 708 275 10 36 chr5 123494273 123494316 -29042943 - B3A SINE B2 -154 44 2 1 1527 1002 155 86 25 chr5 123494532 123494693 -29042566 + B3 SINE B2 2 175 -41 1 1527 369 0 0 0 chr5 123494693 123494734 -29042525 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1 1527 1002 155 86 25 chr5 123494734 123494770 -29042489 + B3 SINE B2 176 210 -6 1 1527 222 37 0 0 chr5 123494853 123494880 -29042379 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1527 1454 71 5 0 chr5 123494896 123495080 -29042179 - B2_Mm1a SINE B2 -7 186 2 1 1527 774 196 14 0 chr5 123495085 123495223 -29042036 - B1_Mur2 SINE Alu -1 148 9 1 1527 210 143 0 0 chr5 123495232 123495267 -29041992 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 1 1527 418 263 25 42 chr5 123495273 123495392 -29041867 - PB1D10 SINE Alu 0 117 1 1 1527 233 244 198 109 chr5 123495425 123495526 -29041733 - PB1D10 SINE Alu -7 110 1 1 1527 246 281 71 101 chr5 123497313 123497412 -29039847 + B1F SINE Alu 51 146 -3 1 1527 1001 96 0 0 chr5 123497918 123498053 -29039206 + B1_Mus2 SINE Alu 13 147 0 1 1527 207 25 75 0 chr5 123498063 123498103 -29039156 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 1 1527 426 238 37 147 chr5 123498111 123498274 -29038985 - B1_Mur1 SINE Alu 0 149 5 1 1527 333 272 37 0 chr5 123498306 123498387 -29038872 - ID_B1 SINE B4 -3 221 138 1 1527 945 260 31 0 chr5 123498374 123498570 -29038689 - ID_B1 SINE B4 -4 220 19 1 1527 278 75 0 0 chr5 123498575 123498615 -29038644 - B2_Mm2 SINE B2 -155 40 1 1 1527 448 271 65 0 chr5 123498940 123499047 -29038212 + PB1D7 SINE Alu 2 115 -5 1 1527 1135 89 0 7 chr5 123499098 123499245 -29038014 + B1_Mus2 SINE Alu 2 147 0 1 1527 782 117 0 0 chr5 123500051 123500162 -29037097 + B2_Mm2 SINE B2 2 112 -83 1 1527 234 0 0 0 chr5 123500174 123500200 -29037059 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1527 735 215 47 7 chr5 123500215 123500365 -29036894 + RSINE1 SINE B4 2 157 -8 3 1527 1169 48 0 0 chr5 123500450 123500596 -29036663 + B1_Mus1 SINE Alu 2 147 -1 4 1527 754 176 59 0 chr5 123500818 123500954 -29036305 - B1_Mur4 SINE Alu 0 150 7 5 1527 416 340 66 70 chr5 123500954 123501042 -29036217 - B4 SINE B4 -63 225 3 6 1527 1085 110 7 0 chr5 123501414 123501559 -29035700 - B1_Mus2 SINE Alu -1 146 1 7 1527 1204 179 14 24 chr5 123501586 123501798 -29035461 - B3 SINE B2 -1 215 6 8 1527 672 246 35 35 chr5 123501875 123502073 -29035186 - B3 SINE B2 -17 199 2 9 1527 813 308 0 15 chr5 123502475 123502739 -29034520 + L1MB7 LINE L1 5716 5975 -209 1 1527 297 68 0 0 chr5 123502777 123502821 -29034438 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 1 1527 546 233 92 0 chr5 123502825 123502945 -29034314 - B1_Mur2 SINE Alu -14 135 5 1 1527 298 322 11 22 chr5 123502934 123503026 -29034233 - ID_B1 SINE B4 -40 184 94 1 1527 564 201 13 40 chr5 123503034 123503184 -29034075 + L1MB7 LINE L1 6027 6172 -6 1 1527 499 171 169 54 chr5 123503249 123503379 -29033880 - B1_Mur2 SINE Alu 0 149 5 1 1527 887 153 14 0 chr5 123503547 123503691 -29033568 + B1_Mus1 SINE Alu 3 148 0 1 1527 411 171 227 0 chr5 123503740 123503828 -29033431 - PB1D10 SINE Alu -7 110 3 1 1527 259 273 0 0 chr5 123503842 123503897 -29033362 - tRNA-Ala-GCY_ tRNA tRNA -9 66 12 1 1527 245 294 15 0 chr5 123503897 123503910 -29033349 - ID2 SINE ID -11 72 4 1 1527 457 319 0 0 chr5 123503927 123504043 -29033216 - ID_B1 SINE B4 0 224 109 1 1527 663 256 5 35 chr5 123504363 123504522 -29032737 - ID_B1 SINE B4 -57 235 83 2 1527 192 40 0 0 chr5 123504534 123504559 -29032700 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1527 243 0 0 0 chr5 123504971 123504998 -29032261 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1527 388 92 0 0 chr5 123505038 123505095 -29032164 + B1_Mus1 SINE Alu 7 63 -87 2 1527 500 241 121 0 chr5 123505147 123505263 -29031996 + B3A SINE B2 27 156 -42 2 1527 233 0 0 59 chr5 123505524 123505558 -29031701 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 2 1527 1215 56 0 0 chr5 123505565 123505707 -29031552 - B1_Mus1 SINE Alu -5 143 2 2 1527 1675 21 0 0 chr5 123505721 123505910 -29031349 - B2_Mm1a SINE B2 -3 190 2 2 1527 444 82 0 0 chr5 123505970 123506031 -29031228 + (TC)n Simple_repeat Simple_repeat 1 61 0 2 1527 862 203 7 0 chr5 123506031 123506179 -29031080 - B1_Mur2 SINE Alu 0 149 1 2 1527 515 270 117 0 chr5 123506207 123506344 -29030915 - RSINE1 SINE B4 -10 155 3 3 1527 248 253 13 0 chr5 123506423 123506502 -29030757 + (TAA)n Simple_repeat Simple_repeat 1 80 0 3 1527 662 233 107 20 chr5 123506503 123506700 -29030559 - B3 SINE B2 -1 215 2 3 1527 1386 77 11 11 chr5 123506728 123506913 -29030346 - B2_Mm2 SINE B2 -10 185 1 3 1527 264 270 180 0 chr5 123506944 123507044 -29030215 + PB1D7 SINE Alu 3 120 0 3 1527 430 57 29 0 chr5 123507044 123507114 -29030145 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 3 1527 215 315 103 51 chr5 123507145 123507162 -29030097 + B4A SINE B4 4 20 -272 3 1527 1922 151 59 6 chr5 123507162 123507502 -29029757 + RLTR15 LTR ERVK 2 359 0 3 1527 215 315 103 51 chr5 123507502 123507601 -29029658 + B4A SINE B4 21 126 -166 3 1527 857 195 22 54 chr5 123507601 123507686 -29029573 + B3 SINE B2 16 193 -23 3 1527 25 31 0 0 chr5 123507744 123507776 -29029483 + AT_rich Low_complexity Low_complexity 1 32 0 3 1527 325 283 59 20 chr5 123508350 123508451 -29028808 - PB1D7 SINE Alu 0 120 16 4 1527 227 143 49 82 chr5 123508556 123508617 -29028642 + ID_B1 SINE B4 129 187 -37 4 1527 351 329 30 37 chr5 123509228 123509392 -29027867 - RSINE1 SINE B4 0 165 3 4 1527 311 225 54 43 chr5 123509761 123509854 -29027405 - MLT1A0 LTR MaLR -271 94 1 4 1527 702 257 40 0 chr5 123509872 123510020 -29027239 + B3A SINE B2 3 156 -42 4 1527 201 175 0 24 chr5 123510125 123510166 -29027093 + G-rich Low_complexity Low_complexity 5 44 0 4 1527 227 196 0 73 chr5 123510860 123510912 -29026347 + B4A SINE B4 84 131 -161 4 1527 488 262 74 0 chr5 123510912 123511034 -29026225 + B3A SINE B2 2 132 -66 4 1527 433 256 0 0 chr5 123511236 123511322 -29025937 - B3A SINE B2 -56 142 57 4 1527 1635 47 0 0 chr5 123511336 123511528 -29025731 - B2_Mm1a SINE B2 0 193 2 4 1527 224 238 48 48 chr5 123511528 123511601 -29025658 - B4 SINE B4 -216 76 3 5 1527 1119 59 0 0 chr5 123511647 123511782 -29025477 + B1_Mus2 SINE Alu 1 135 -12 5 1527 342 0 0 0 chr5 123511782 123511820 -29025439 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 5 1527 1247 78 5 77 chr5 123511832 123512027 -29025232 + B2_Mm2 SINE B2 1 181 -14 5 1527 703 192 85 0 chr5 123512058 123512188 -29025071 + B1_Mus1 SINE Alu 2 142 -6 5 1527 234 143 0 23 chr5 123512292 123512335 -29024924 - L1MC LINE L1 -752 5592 5551 5 1527 303 171 538 8 chr5 123512390 123512507 -29024752 - B3 SINE B2 -7 209 31 5 1527 253 232 14 0 chr5 123512560 123512629 -29024630 - L1M4 LINE L1 -722 5462 5393 5 1527 1113 75 0 0 chr5 123512663 123512809 -29024450 - B2_Mm2 SINE B2 -48 147 2 5 1527 452 126 142 12 chr5 123512809 123512902 -29024357 - PB1D9 SINE Alu -2 118 21 5 1527 22 35 0 0 chr5 123512956 123512985 -29024274 + AT_rich Low_complexity Low_complexity 1 29 0 6 1527 750 155 43 0 chr5 123512985 123513101 -29024158 + B1_Mus2 SINE Alu 2 122 -25 6 1527 695 269 15 93 chr5 123513263 123513419 -29023840 + B4A SINE B4 84 233 -59 6 1527 1494 58 15 26 chr5 123513419 123513614 -29023645 + B2_Mm1a SINE B2 1 193 0 6 1527 1402 70 38 0 chr5 123513617 123513802 -29023457 + B2_Mm2 SINE B2 1 192 -3 6 1527 695 269 15 93 chr5 123513802 123513846 -29023413 + B4A SINE B4 234 272 -20 6 1527 341 22 22 0 chr5 123513850 123513896 -29023363 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1527 1190 61 0 7 chr5 123513927 123514075 -29023184 - B1_Mus2 SINE Alu 0 147 1 6 1527 1078 72 0 0 chr5 123514083 123514222 -29023037 - B1_Mm SINE Alu 0 147 9 6 1527 254 297 40 68 chr5 123514088 123514265 -29022994 + YREP_Mm Unknown Unknown 182 353 -1459 6 1527 216 0 0 0 chr5 123514300 123514324 -29022935 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1527 297 186 113 85 chr5 123514473 123514579 -29022680 - PB1D10 SINE Alu -7 110 2 7 1527 686 130 193 23 chr5 123514703 123514859 -29022400 + B2_Mm1t SINE B2 11 188 -5 7 1527 1256 34 0 7 chr5 123514972 123515118 -29022141 + B1_Mus2 SINE Alu 2 146 -1 7 1527 232 47 59 59 chr5 123515118 123515186 -29022073 + (CAAA)n Simple_repeat Simple_repeat 1 68 0 7 1527 1246 34 7 0 chr5 123515204 123515350 -29021909 + B1_Mm SINE Alu 1 147 0 7 1527 420 226 40 54 chr5 123515366 123515513 -29021746 + B3 SINE B2 53 198 0 7 1527 297 75 0 0 chr5 123515528 123515568 -29021691 + (TGG)n Simple_repeat Simple_repeat 2 41 0 7 1527 702 114 121 17 chr5 123515568 123515677 -29021582 + B1_Mur4 SINE Alu 19 141 -9 7 1527 243 0 0 0 chr5 123515677 123515704 -29021555 + (CAAAC)n Simple_repeat Simple_repeat 2 28 0 7 1527 414 236 161 11 chr5 123515788 123515968 -29021291 + L1MD3 LINE L1 7647 7853 -142 7 1527 290 211 0 17 chr5 123515971 123516029 -29021230 - ID_B1 SINE B4 -1 223 167 8 1527 302 185 56 0 chr5 123516834 123516888 -29020371 + ID_B1 SINE B4 99 155 -69 8 1527 619 207 41 0 chr5 123516894 123517015 -29020244 + B1_Mur2 SINE Alu 5 130 -19 8 1527 1623 37 0 16 chr5 123517038 123517231 -29020028 - B2_Mm1a SINE B2 -2 191 2 8 1527 433 262 46 9 chr5 123517419 123517527 -29019732 - PB1D9 SINE Alu -8 112 1 8 1527 439 229 40 63 chr5 123517788 123517914 -29019345 + MER5A1 DNA MER1_type 40 162 -4 8 1527 477 0 0 0 chr5 123517987 123518040 -29019219 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 8 1527 209 140 0 23 chr5 123519010 123519054 -29018205 + CT-rich Low_complexity Low_complexity 1 43 0 8 1527 219 171 0 24 chr5 123519055 123519084 -29018175 + polypyrimidine Low_complexity Low_complexity 14 42 0 8 1527 1108 75 7 13 chr5 123519084 123519233 -29018026 - B1_Mus1 SINE Alu 0 148 1 8 1527 219 171 0 24 chr5 123519233 123519245 -29018014 + polypyrimidine Low_complexity Low_complexity 2 13 0 9 1527 240 286 0 16 chr5 123519290 123519354 -29017905 + B1_Mur4 SINE Alu 30 92 -58 9 1527 916 188 80 0 chr5 123519356 123519532 -29017727 - B3 SINE B2 -26 190 1 9 1527 1378 101 0 5 chr5 123519582 123519771 -29017488 - B2_Mm2 SINE B2 -7 188 1 9 1527 431 322 41 90 chr5 123519797 123520087 -29017172 - B4 SINE B4 -9 283 8 9 1527 1013 123 0 7 chr5 123520087 123520514 -29016745 + (TCCA)n Simple_repeat Simple_repeat 1 424 0 9 1527 379 241 11 65 chr5 123520519 123520612 -29016647 - PB1D10 SINE Alu -20 97 10 9 1527 1145 138 17 0 chr5 123520783 123520957 -29016302 - B2_Mm2 SINE B2 -17 178 2 9 1527 357 161 0 0 chr5 123520977 123521033 -29016226 - ORR1D2 LTR MaLR -3 367 312 9 1527 766 188 0 40 chr5 123521038 123521188 -29016071 + B1_Mur3 SINE Alu 3 146 -3 9 1527 1416 73 17 0 chr5 123521196 123521374 -29015885 + B2_Mm2 SINE B2 1 181 -14 1 1527 1127 103 0 0 chr5 123521387 123521533 -29015726 - B1_Mus1 SINE Alu -1 147 2 1 1527 460 212 16 32 chr5 123521544 123521643 -29015616 + RMER17C LTR ERVK 89 186 -224 1 1527 761 82 0 9 chr5 123521643 123521754 -29015505 + (TTCTC)n Simple_repeat Simple_repeat 4 113 0 1 1527 460 212 16 32 chr5 123521754 123521844 -29015415 + RMER17C LTR ERVK 187 275 -135 1 1527 1226 111 38 16 chr5 123521921 123522104 -29015155 - B2_Mm2 SINE B2 -8 187 1 1 1527 682 298 54 25 chr5 123522117 123522396 -29014863 - RMER15 LTR ERVL -16 559 273 1 1527 280 208 0 122 chr5 123522393 123522475 -29014784 - RMER15 LTR ERVL -418 157 86 1 1527 538 168 227 0 chr5 123522516 123522635 -29014624 + ID_B1 SINE B4 69 214 -10 1 1527 1259 51 0 166 chr5 123522777 123522946 -29014313 - B2_Mm2 SINE B2 -19 176 42 1 1527 1087 61 0 81 chr5 123522946 123523106 -29014153 - B1_Mus1 SINE Alu 0 148 2 1 1527 1259 51 0 166 chr5 123523106 123523147 -29014112 - B2_Mm2 SINE B2 -154 41 1 1 1527 268 290 0 79 chr5 123523193 123523294 -29013965 - L2c LINE L2 -7 3380 3288 1 1527 920 161 28 0 chr5 123523317 123523460 -29013799 - B1_Mur4 SINE Alu -1 149 3 1 1527 21 0 0 0 chr5 123523467 123523488 -29013771 + AT_rich Low_complexity Low_complexity 1 21 0 1 1527 974 166 75 40 chr5 123523488 123523689 -29013570 - B3 SINE B2 -6 210 3 1 1527 1256 47 0 0 chr5 123523743 123523891 -29013368 + B1_Mus1 SINE Alu 1 148 0 1 1527 940 281 60 16 chr5 123523920 123524235 -29013024 - RMER5 LTR ERV1 -9 525 197 1 1527 221 75 0 24 chr5 123524237 123524278 -29012981 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 1527 1217 75 0 0 chr5 123524278 123524425 -29012834 + B1_Mus1 SINE Alu 2 148 0 1 1527 336 102 0 0 chr5 123524426 123524475 -29012784 + (A)n Simple_repeat Simple_repeat 1 49 0 1 1527 2879 74 5 0 chr5 123524542 123524920 -29012339 - L1_Mus3 LINE L1 0 6638 6259 1 1527 553 78 0 72 chr5 123524920 123525003 -29012256 - B2_Mm2 SINE B2 -117 78 2 1 1527 261 338 165 25 chr5 123525042 123525279 -29011980 + MLT1C LTR MaLR 198 467 0 1 1527 612 175 102 16 chr5 123525292 123525420 -29011839 - B1_Mur2 SINE Alu 0 149 11 1 1527 249 33 0 0 chr5 123525490 123525520 -29011739 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1527 488 16 0 16 chr5 123528206 123528268 -29008991 + (TTCTC)n Simple_repeat Simple_repeat 5 65 0 1 1527 310 214 28 7 chr5 123528286 123528427 -29008832 + (TA)n Simple_repeat Simple_repeat 1 144 0 1 1527 844 242 14 23 chr5 123528439 123528655 -29008604 - B3 SINE B2 -1 215 2 1 1527 327 26 0 0 chr5 123528687 123528725 -29008534 - HAL1-3A_ME LINE L1 -840 2018 1981 1 1527 346 195 0 94 chr5 123528725 123528810 -29008449 - B3A SINE B2 -16 182 106 1 1527 662 160 103 8 chr5 123528831 123528957 -29008302 - B1_Mur2 SINE Alu -5 144 7 1 1527 186 245 130 19 chr5 123528971 123529025 -29008234 - MIRm SINE MIR -109 167 108 1 1527 439 194 14 14 chr5 123529230 123529524 -29007735 + (TG)n Simple_repeat Simple_repeat 1 294 0 1 1527 511 183 29 0 chr5 123529542 123529717 -29007542 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1527 378 0 0 0 chr5 123530441 123530483 -29006776 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 1527 585 337 33 6 chr5 123530655 123530837 -29006422 - B3A SINE B2 -11 187 1 1 1527 690 233 7 0 chr5 123531011 123531157 -29006102 - B1_Mur2 SINE Alu -1 148 2 1 1527 659 175 34 68 chr5 123531536 123531683 -29005576 + B1_Mur3 SINE Alu 2 143 -6 1 1527 1640 21 5 20 chr5 123531693 123531888 -29005371 + B2_Mm1t SINE B2 2 193 0 1 1527 1402 75 48 0 chr5 123531896 123532082 -29005177 + B2_Mm2 SINE B2 1 195 0 1 1527 1227 43 0 0 chr5 123532098 123532239 -29005020 + B1_Mus1 SINE Alu 2 142 -6 1 1527 240 35 0 0 chr5 123532243 123532272 -29004987 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1527 462 263 83 0 chr5 123532406 123532539 -29004720 - RSINE1 SINE B4 -2 163 20 1 1527 301 243 54 0 chr5 123532787 123532861 -29004398 + 4.5SRNA scRNA scRNA 1 78 -16 1 1527 387 142 82 20 chr5 123532795 123532883 -29004376 + PB1D10 SINE Alu 10 99 -21 1 1527 306 50 0 0 chr5 123532923 123532963 -29004296 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1527 183 80 0 0 chr5 123533006 123533031 -29004228 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 1 1527 225 0 0 0 chr5 123533095 123533120 -29004139 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1 1527 257 312 186 1 chr5 123533370 123533503 -29003756 - MIR SINE MIR -112 156 2 1 1527 298 331 124 11 chr5 123534315 123534335 -29002924 - B3 SINE B2 -14 202 9 1 1527 690 263 13 13 chr5 123534335 123534489 -29002770 - RSINE1 SINE B4 0 165 12 1 1527 527 196 215 0 chr5 123534629 123534736 -29002523 + ID_B1 SINE B4 87 216 -8 1 1527 884 45 0 9 chr5 123534811 123534922 -29002337 + B2_Mm2 SINE B2 1 110 -85 1 1527 671 125 96 0 chr5 123535174 123535278 -29001981 + PB1D9 SINE Alu 1 114 -6 1 1527 475 277 42 8 chr5 123535408 123535528 -29001731 - ID_B1 SINE B4 0 224 101 1 1527 279 173 0 0 chr5 123535660 123535712 -29001547 + (TATG)n Simple_repeat Simple_repeat 3 54 0 1 1527 681 240 159 6 chr5 123535712 123535888 -29001371 - B3 SINE B2 -13 203 1 1 1527 1211 68 0 0 chr5 123536363 123536510 -29000749 - B1_Mus1 SINE Alu 0 148 2 1 1527 395 261 106 18 chr5 123536518 123536631 -29000628 + B1_Mur1 SINE Alu 22 144 -5 1 1527 303 280 65 113 chr5 123536844 123537154 -29000105 + RMER10A LTR ERVL 122 416 -26 1 1527 251 286 42 14 chr5 123537189 123537260 -28999999 - ID2 SINE ID -76 76 4 1 1527 320 255 204 7 chr5 123537272 123537414 -28999845 + L1MB7 LINE L1 5948 6117 -67 1 1527 398 286 126 21 chr5 123537414 123537557 -28999702 + RSINE1 SINE B4 3 160 -5 1 1527 216 0 0 0 chr5 123537563 123537587 -28999672 + (TCTCTG)n Simple_repeat Simple_repeat 1 24 0 1 1527 306 67 0 0 chr5 123537590 123537635 -28999624 + (CTCA)n Simple_repeat Simple_repeat 4 48 0 1 1527 1097 63 0 14 chr5 123537766 123537911 -28999348 + B1_Mus1 SINE Alu 6 148 0 1 1527 180 0 0 0 chr5 123537924 123537944 -28999315 + (TAAAAA)n Simple_repeat Simple_repeat 4 23 0 1 1527 474 157 0 0 chr5 123538133 123538216 -28999043 + CT-rich Low_complexity Low_complexity 2 84 0 1 1527 1395 94 5 5 chr5 123538216 123538408 -28998851 - B2_Mm1t SINE B2 -1 192 1 1 1527 318 330 74 58 chr5 123538758 123538948 -28998311 - MLT1K LTR MaLR -331 264 72 1 1527 487 220 149 26 chr5 123539070 123539213 -28998046 + ORR1E LTR MaLR 1 163 -196 1 1527 2588 113 62 3 chr5 123539213 123539585 -28997674 - ORR1B1 LTR MaLR 0 394 1 1 1527 281 218 139 13 chr5 123539585 123539648 -28997611 - ORR1B2 LTR MaLR -293 74 2 1 1527 2425 241 43 26 chr5 123539800 123540443 -28996816 + ORR1E-int LTR MaLR 203 856 -514 1 1527 361 309 77 59 chr5 123540445 123540665 -28996594 - MT2B LTR ERVL -211 390 167 1 1527 705 181 17 0 chr5 123540551 123540667 -28996592 - B1_Mur1 SINE Alu -31 118 1 1 1527 280 270 27 99 chr5 123540669 123540780 -28996479 - PB1D10 SINE Alu -5 112 10 1 1527 542 331 19 13 chr5 123541071 123541230 -28996029 - MLT1G LTR MaLR -381 210 51 1 1527 660 156 0 18 chr5 123541250 123541361 -28995898 + PB1D9 SINE Alu 9 117 -3 1 1527 300 210 229 48 chr5 123541609 123541714 -28995545 + B4A SINE B4 49 172 -120 1 1527 697 177 0 0 chr5 123541652 123541765 -28995494 + B1_Mur1 SINE Alu 22 134 -15 1 1527 1203 61 0 20 chr5 123541773 123541923 -28995336 - B1_Mus1 SINE Alu 0 148 2 1 1527 1129 125 73 6 chr5 123541924 123542101 -28995158 - B2_Mm2 SINE B2 -5 190 2 1 1527 21 0 0 0 chr5 123542109 123542130 -28995129 + AT_rich Low_complexity Low_complexity 1 21 0 1 1527 261 210 0 0 chr5 123542130 123542192 -28995067 + (TA)n Simple_repeat Simple_repeat 2 63 0 1 1527 70 41 0 0 chr5 123542231 123542329 -28994930 + AT_rich Low_complexity Low_complexity 1 98 0 1 1527 392 302 34 8 chr5 123542389 123542506 -28994753 - B1F2 SINE Alu -29 120 1 1 1527 252 288 56 72 chr5 123542506 123542686 -28994573 + L1MA10 LINE L1 6145 6321 -13 1 1527 432 208 144 15 chr5 123542833 123542965 -28994294 + B1F2 SINE Alu 1 149 0 1 1527 666 242 130 10 chr5 123543014 123543214 -28994045 - URR1A DNA MER1_type -2 224 1 1 1527 225 0 0 0 chr5 123543626 123543651 -28993608 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 1 1527 1318 66 71 0 chr5 123543719 123543901 -28993358 + B2_Mm2 SINE B2 1 195 0 1 1527 302 137 0 19 chr5 123544102 123544154 -28993105 + B1_Mur4 SINE Alu 2 52 -98 1 1527 266 206 71 29 chr5 123544103 123544173 -28993086 + ID_B1 SINE B4 84 156 -68 1 1527 490 229 73 44 chr5 123544276 123544413 -28992846 + RSINE1 SINE B4 3 143 -22 1 1527 483 274 0 0 chr5 123545218 123545324 -28991935 - B1F2 SINE Alu -2 147 42 1 1527 597 226 36 14 chr5 123545536 123545675 -28991584 + B1_Mur1 SINE Alu 1 142 -7 1 1527 1134 88 0 0 chr5 123546253 123546401 -28990858 + B1_Mus1 SINE Alu 1 148 0 1 1527 377 361 99 27 chr5 123546704 123546907 -28990352 - MLT1K LTR MaLR -292 303 84 1 1527 752 265 69 10 chr5 123546907 123547109 -28990150 + ID_B1 SINE B4 5 218 -6 1 1527 377 361 99 27 chr5 123547109 123547127 -28990132 - MLT1K LTR MaLR -512 83 67 1 1527 396 0 0 0 chr5 123547196 123547240 -28990019 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1527 550 203 13 141 chr5 123547296 123547383 -28989876 + B1_Mur2 SINE Alu 14 93 -56 1 1527 261 0 0 0 chr5 123547383 123547412 -28989847 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1527 1057 81 15 0 chr5 123547412 123547548 -28989711 - B1_Mus1 SINE Alu -10 138 1 1 1527 958 124 7 7 chr5 123547551 123547697 -28989562 - B1_Mus2 SINE Alu 0 147 2 2 1527 550 203 13 141 chr5 123547697 123547753 -28989506 + B1_Mur2 SINE Alu 94 142 -7 1 1527 1199 86 12 0 chr5 123547768 123547930 -28989329 + B2_Mm2 SINE B2 1 164 -31 2 1527 315 0 0 0 chr5 123547930 123547965 -28989294 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2 1527 517 272 14 92 chr5 123548279 123548502 -28988757 - ID_B1 SINE B4 -96 196 2 2 1527 590 266 55 28 chr5 123548515 123548697 -28988562 - MLT1K LTR MaLR -27 568 382 2 1527 495 132 53 62 chr5 123549025 123549138 -28988121 - ID_B1 SINE B4 0 224 113 2 1527 230 300 55 55 chr5 123549138 123549151 -28988108 - FAM SINE Alu -1 309 184 2 1527 258 105 0 0 chr5 123549152 123549190 -28988069 + (TTA)n Simple_repeat Simple_repeat 1 38 0 2 1527 183 184 0 0 chr5 123549190 123549228 -28988031 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 2 1527 309 51 0 0 chr5 123549253 123549292 -28987967 + (CATA)n Simple_repeat Simple_repeat 1 39 0 2 1527 866 146 44 0 chr5 123549305 123549442 -28987817 - B1_Mur3 SINE Alu -6 143 1 2 1527 213 306 63 89 chr5 123549442 123549521 -28987738 - B4 SINE B4 -154 138 62 2 1527 214 386 41 41 chr5 123549663 123549809 -28987450 - MIRb SINE MIR -29 239 94 2 1527 700 169 7 62 chr5 123550406 123550551 -28986708 - B1F2 SINE Alu -1 148 12 2 1527 294 282 75 25 chr5 123550448 123550568 -28986691 - B4A SINE B4 -87 205 80 2 1527 442 347 77 69 chr5 123550845 123551195 -28986064 - MLT1K LTR MaLR 0 595 243 2 1527 183 42 0 0 chr5 123551202 123551226 -28986033 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1527 366 23 0 0 chr5 123551226 123551268 -28985991 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1527 246 300 14 0 chr5 123551330 123551400 -28985859 - MLT1K LTR MaLR -343 169 99 2 1527 193 29 59 0 chr5 123551526 123551560 -28985699 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 2 1527 423 276 35 17 chr5 123552625 123552798 -28984461 + L1MB7 LINE L1 5826 6001 -183 2 1527 243 0 0 0 chr5 123552818 123552845 -28984414 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 2 1527 606 143 20 0 chr5 123552934 123553032 -28984227 - B1_Mus2 SINE Alu -1 146 47 2 1527 1020 226 20 0 chr5 123553095 123553294 -28983965 + ID_B1 SINE B4 2 204 -20 2 1527 237 346 99 50 chr5 123554012 123554173 -28983086 - MLT1C LTR MaLR -6 461 293 2 1527 631 270 191 64 chr5 123554642 123555030 -28982229 - MLT1K LTR MaLR -5 590 154 2 1527 211 209 0 0 chr5 123555087 123555130 -28982129 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 2 1527 499 188 0 12 chr5 123555868 123555954 -28981305 + B3A SINE B2 1 85 -113 2 1527 370 285 37 89 chr5 123555948 123556083 -28981176 + RSINE1 SINE B4 5 132 -33 2 1527 385 210 0 80 chr5 123556137 123556225 -28981034 + B1_Mur3 SINE Alu 2 82 -67 2 1527 518 120 7 94 chr5 123556204 123556355 -28980904 + PB1D9 SINE Alu 22 149 0 2 1527 466 197 75 43 chr5 123556651 123556885 -28980374 - RMER13B LTR ERVK -444 514 310 2 1527 761 130 0 0 chr5 123556897 123557012 -28980247 + B1_Mus2 SINE Alu 3 117 -30 2 1527 314 262 154 10 chr5 123557357 123557461 -28979798 - PB1D7 SINE Alu 0 120 2 2 1527 559 245 0 87 chr5 123557479 123557494 -28979765 - ID_B1 SINE B4 0 224 82 2 1527 822 183 0 0 chr5 123557494 123557636 -28979623 - B1_Mur1 SINE Alu -7 142 1 2 1527 620 220 24 9 chr5 123557772 123557918 -28979341 + B3A SINE B2 8 160 -33 2 1527 336 48 0 0 chr5 123557918 123557960 -28979299 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 2 1527 357 343 58 11 chr5 123557960 123557992 -28979267 + B2_Mm1a SINE B2 161 192 -1 2 1527 1199 54 0 20 chr5 123558392 123558542 -28978717 - B1_Mus1 SINE Alu 0 148 2 2 1527 474 299 102 0 chr5 123558947 123559094 -28978165 - RSINE1 SINE B4 0 165 4 2 1527 198 270 47 16 chr5 123559114 123559178 -28978081 + L2b LINE L2 3309 3374 -1 2 1527 324 287 10 21 chr5 123559581 123559677 -28977582 - MLT1K LTR MaLR -302 293 199 2 1527 692 257 21 68 chr5 123560811 123561003 -28976256 - B3A SINE B2 -15 183 1 2 1527 516 236 9 0 chr5 123561013 123561119 -28976140 - PB1D10 SINE Alu -9 108 2 2 1527 558 187 0 18 chr5 123561323 123561432 -28975827 - PB1D9 SINE Alu 0 120 14 2 1527 851 241 57 33 chr5 123562070 123562280 -28974979 + B3 SINE B2 2 216 0 2 1527 300 159 0 0 chr5 123562289 123562316 -28974943 + A-rich Low_complexity Low_complexity 3 29 0 2 1527 352 221 219 8 chr5 123562316 123562439 -28974820 + B1F2 SINE Alu 1 149 0 2 1527 1644 47 0 0 chr5 123562441 123562634 -28974625 + B2_Mm1a SINE B2 1 193 0 2 1527 300 159 0 0 chr5 123562634 123562645 -28974614 + A-rich Low_complexity Low_complexity 30 40 0 2 1527 1196 55 0 14 chr5 123562645 123562792 -28974467 + B1_Mus2 SINE Alu 3 147 0 2 1527 300 159 0 0 chr5 123562792 123562818 -28974441 + A-rich Low_complexity Low_complexity 41 66 0 2 1527 1458 72 0 6 chr5 123562838 123563020 -28974239 + B2_Mm2 SINE B2 1 181 -14 2 1527 212 175 0 0 chr5 123563020 123563060 -28974199 + T-rich Low_complexity Low_complexity 1 40 0 2 1527 1141 55 0 33 chr5 123563061 123563211 -28974048 - B1_Mm SINE Alu -2 145 1 2 1527 581 27 0 13 chr5 123563231 123563307 -28973952 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 2 1527 451 311 69 20 chr5 123563489 123563692 -28973567 - MLT1B LTR MaLR -27 363 151 2 1527 411 216 113 0 chr5 123565467 123565564 -28971695 + PB1 SINE Alu 2 109 -18 2 1527 387 0 0 0 chr5 123565605 123565648 -28971611 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1527 326 287 26 105 chr5 123567802 123567954 -28969305 + Charlie8 DNA MER1_type 28 167 -2261 2 1527 613 224 144 0 chr5 123568094 123568268 -28968991 - MER58A DNA MER1_type -25 199 1 2 1527 273 189 160 41 chr5 123569965 123570066 -28967193 - B1_Mur4 SINE Alu -1 149 3 2 1527 254 274 135 14 chr5 123571113 123571187 -28966072 - B1_Mur3 SINE Alu -66 83 1 2 1527 1143 78 0 0 chr5 123571299 123571441 -28965818 - B1_Mus2 SINE Alu -5 142 1 2 1527 753 113 13 78 chr5 123571563 123571589 -28965670 - B2_Mm2 SINE B2 0 195 171 2 1527 910 183 62 29 chr5 123571589 123571797 -28965462 + B3 SINE B2 1 215 -1 2 1527 753 113 13 78 chr5 123571797 123571923 -28965336 - B2_Mm2 SINE B2 -25 170 53 2 1527 696 80 0 10 chr5 123571924 123572025 -28965234 - B1_Mm SINE Alu -47 100 1 2 1527 373 200 9 130 chr5 123572025 123572039 -28965220 - MT2B LTR ERVL -346 255 155 2 1527 933 163 0 7 chr5 123572068 123572216 -28965043 + B1_Mur4 SINE Alu 4 150 0 2 1527 31 26 0 0 chr5 123572216 123572254 -28965005 + AT_rich Low_complexity Low_complexity 1 38 0 2 1527 240 175 0 0 chr5 123572254 123572294 -28964965 + B3 SINE B2 2 41 -175 2 1527 1308 131 35 10 chr5 123572294 123572494 -28964765 - B3 SINE B2 -10 206 2 2 1527 415 177 124 10 chr5 123572519 123572616 -28964643 - PB1D9 SINE Alu -2 118 11 2 1527 516 228 110 0 chr5 123572659 123572786 -28964473 - B1_Mur4 SINE Alu -9 141 1 2 1527 180 97 0 0 chr5 123572786 123572817 -28964442 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2 1527 1354 99 11 0 chr5 123572818 123573000 -28964259 - B2_Mm1t SINE B2 -8 185 2 2 1527 305 217 158 32 chr5 123573004 123573099 -28964160 - PB1D10 SINE Alu 0 127 21 2 1527 261 338 110 27 chr5 123573411 123573557 -28963702 - MER3 DNA MER1_type 0 209 52 2 1527 261 0 0 0 chr5 123573630 123573659 -28963600 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 2 1527 734 187 22 0 chr5 123573668 123573802 -28963457 - B1_Mur2 SINE Alu 0 149 13 2 1527 747 140 48 156 chr5 123573802 123573988 -28963271 + B2_Mm2 SINE B2 1 166 -29 2 1527 515 255 38 147 chr5 123573981 123574165 -28963094 + B3 SINE B2 27 206 -10 2 1527 256 345 13 82 chr5 123574158 123574180 -28963079 + RLTR25B LTR ERVK 428 477 -551 2 1527 727 52 0 0 chr5 123574180 123574276 -28962983 + B1_Mus2 SINE Alu 42 137 -10 2 1527 256 345 13 82 chr5 123574276 123574316 -28962943 + RLTR25B LTR ERVK 478 574 -454 2 1527 924 50 0 0 chr5 123574325 123574445 -28962814 + B1_Mus2 SINE Alu 19 138 -9 2 1527 221 0 35 0 chr5 123574445 123574474 -28962785 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1527 294 330 90 86 chr5 123574579 123574699 -28962560 + MER2 DNA MER2_type 96 232 -113 2 1527 1189 83 0 0 chr5 123574699 123574844 -28962415 + B1_Mus2 SINE Alu 3 147 0 2 1527 294 330 90 86 chr5 123574844 123574945 -28962314 + MER2 DNA MER2_type 233 318 -27 2 1527 1334 149 18 22 chr5 123575188 123575414 -28961845 - URR1A DNA MER1_type 0 226 2 2 1527 240 59 0 0 chr5 123575754 123575788 -28961471 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 1527 327 339 37 20 chr5 123575870 123576110 -28961149 + L2a LINE L2 3040 3279 -108 2 1527 36 0 0 21 chr5 123576546 123576564 -28960695 + AT_rich Low_complexity Low_complexity 1 18 0 2 1527 926 82 0 179 chr5 123576564 123576743 -28960516 + B1_Mus2 SINE Alu 1 147 0 2 1527 36 0 0 21 chr5 123576743 123576771 -28960488 + AT_rich Low_complexity Low_complexity 1 28 0 2 1527 251 338 12 0 chr5 123576849 123576929 -28960330 - B3A SINE B2 -112 86 6 2 1527 285 29 0 0 chr5 123577071 123577105 -28960154 + (TTTTG)n Simple_repeat Simple_repeat 4 37 0 2 1527 784 255 117 21 chr5 123577172 123577412 -28959847 + MTD LTR MaLR 18 280 -139 2 1527 715 185 60 110 chr5 123577412 123577594 -28959665 + URR1A DNA MER1_type 1 173 -53 2 1527 352 244 143 24 chr5 123577602 123577728 -28959531 + MTD LTR MaLR 279 419 0 2 1527 591 108 11 21 chr5 123577948 123578043 -28959216 + B1_Mus2 SINE Alu 41 134 -13 2 1527 249 57 0 0 chr5 123578043 123578078 -28959181 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 2 1527 861 108 236 0 chr5 123578078 123578235 -28959024 + B2_Mm2 SINE B2 2 195 0 2 1527 186 310 47 57 chr5 123578235 123578341 -28958918 + MIRc SINE MIR 47 151 -117 2 1527 225 265 263 8 chr5 123579787 123579905 -28957354 + B1F1 SINE Alu 1 148 -1 3 1527 261 192 135 14 chr5 123579919 123579993 -28957266 + ID4_ SINE ID 1 83 0 3 1527 1120 45 0 29 chr5 123581128 123581267 -28955992 - B1_Mus1 SINE Alu -12 136 2 3 1527 33 0 0 0 chr5 123584181 123584214 -28953045 + AT_rich Low_complexity Low_complexity 1 33 0 3 1527 275 368 13 13 chr5 123586302 123586427 -28950832 + MIR SINE MIR 1 125 -143 3 1527 254 263 162 0 chr5 123586726 123586825 -28950434 - MIRb SINE MIR -70 198 84 3 1527 194 354 107 8 chr5 123587212 123587343 -28949916 + MER5A DNA MER1_type 46 189 0 3 1527 206 250 0 0 chr5 123591528 123591580 -28945679 + A-rich Low_complexity Low_complexity 1 52 0 3 1527 302 98 20 0 chr5 123592144 123592195 -28945064 + (GGA)n Simple_repeat Simple_repeat 2 53 0 3 1527 291 140 0 0 chr5 123592282 123592332 -28944927 + (CAG)n Simple_repeat Simple_repeat 3 52 0 3 1527 23 68 0 0 chr5 123592370 123592414 -28944845 + GC_rich Low_complexity Low_complexity 1 44 0 3 1527 261 0 0 0 chr5 123592487 123592516 -28944743 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1527 36 82 0 0 chr5 123592545 123592630 -28944629 + GC_rich Low_complexity Low_complexity 1 85 0 3 1527 225 132 0 0 chr5 123593951 123593989 -28943270 + (T)n Simple_repeat Simple_repeat 1 38 0 3 1527 186 43 0 0 chr5 123595038 123595061 -28942198 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 3 1527 252 0 0 0 chr5 123595582 123595610 -28941649 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1527 183 288 29 29 chr5 123597376 123597444 -28939815 - L3 LINE CR1 -3517 972 905 3 1527 243 88 0 0 chr5 123599704 123599738 -28937521 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 3 1527 256 296 29 48 chr5 123600036 123600139 -28937120 + MIRb SINE MIR 71 171 -97 3 1528 489 319 104 17 chr5 123601197 123601427 -28935832 + MIR SINE MIR 10 259 -3 3 1528 307 342 69 25 chr5 123601469 123601673 -28935586 + L2a LINE L2 3207 3419 -7 3 1528 290 307 0 69 chr5 123601990 123602083 -28935176 + C-rich Low_complexity Low_complexity 95 180 0 3 1528 216 0 0 0 chr5 123602083 123602107 -28935152 + (CCA)n Simple_repeat Simple_repeat 1 24 0 3 1528 290 307 0 69 chr5 123602107 123602202 -28935057 + C-rich Low_complexity Low_complexity 5 94 0 3 1528 856 147 44 0 chr5 123602814 123602950 -28934309 + B1_Mus1 SINE Alu 1 142 -6 3 1528 228 67 0 0 chr5 123602952 123602982 -28934277 + (TAGG)n Simple_repeat Simple_repeat 1 30 0 3 1528 227 342 30 98 chr5 123603006 123603139 -28934120 - MER3 DNA MER1_type -18 191 68 3 1528 204 73 0 89 chr5 123603456 123603485 -28933774 + T-rich Low_complexity Low_complexity 14 42 0 3 1528 1230 48 0 0 chr5 123603485 123603631 -28933628 - B1_Mm SINE Alu 0 147 2 3 1528 204 73 0 89 chr5 123603631 123603646 -28933613 + T-rich Low_complexity Low_complexity 2 13 0 3 1528 458 176 0 196 chr5 123603661 123603809 -28933450 + PB1D9 SINE Alu 1 119 -1 3 1528 215 21 40 60 chr5 123604254 123604304 -28932955 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1528 1208 68 0 0 chr5 123604316 123604463 -28932796 - B1_Mus2 SINE Alu 0 147 1 3 1528 909 156 6 58 chr5 123604465 123604621 -28932638 - B1_Mur3 SINE Alu 0 149 2 3 1528 742 180 21 7 chr5 123604629 123604769 -28932490 - B1_Mur2 SINE Alu -7 142 1 3 1528 285 279 16 126 chr5 123604826 123604953 -28932306 + MT2B LTR ERVL 153 265 -336 3 1528 767 189 0 7 chr5 123604846 123604985 -28932274 + B1_Mur2 SINE Alu 11 148 -1 3 1528 648 308 35 10 chr5 123605002 123605202 -28932057 - ID_B1 SINE B4 -16 208 4 3 1528 1419 73 17 0 chr5 123605210 123605387 -28931872 - B2_Mm2 SINE B2 -14 181 2 3 1528 210 231 0 0 chr5 123605499 123605538 -28931721 + B1F SINE Alu 57 95 -54 3 1528 693 226 214 6 chr5 123605561 123605739 -28931520 + B3 SINE B2 2 216 0 3 1528 1159 37 7 0 chr5 123605744 123605880 -28931379 + B1_Mus1 SINE Alu 2 138 -10 3 1528 180 0 0 0 chr5 123605880 123605900 -28931359 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 1528 242 281 129 50 chr5 123605973 123606074 -28931185 - ID_B1 SINE B4 0 224 116 3 1528 1044 182 45 10 chr5 123606130 123606330 -28930929 - B3 SINE B2 -8 208 2 3 1528 831 155 28 0 chr5 123606367 123606509 -28930750 - B1_Mus1 SINE Alu -1 147 2 3 1528 234 156 0 0 chr5 123606510 123606555 -28930704 + T-rich Low_complexity Low_complexity 1 45 0 3 1528 213 261 0 0 chr5 123607481 123607546 -28929713 + CT-rich Low_complexity Low_complexity 2 66 0 3 1528 333 100 0 0 chr5 123607577 123607627 -28929632 + (GGA)n Simple_repeat Simple_repeat 2 51 0 3 1528 273 330 83 28 chr5 123608025 123608243 -28929016 + L1MB5 LINE L1 5933 6162 -12 3 1528 255 125 0 0 chr5 123608555 123608595 -28928664 + (GGA)n Simple_repeat Simple_repeat 1 40 0 3 1528 276 361 12 31 chr5 123609301 123609461 -28927798 - L2a LINE L2 -6 3420 3264 3 1528 185 114 0 64 chr5 123610714 123610761 -28926498 + C-rich Low_complexity Low_complexity 5 48 0 3 1528 388 269 58 16 chr5 123611368 123611489 -28925770 - MIRb SINE MIR -56 212 87 3 1528 1242 75 121 0 chr5 123612129 123612303 -28924956 - B2_Mm2 SINE B2 0 195 1 3 1528 429 171 196 109 chr5 123612709 123612730 -28924529 + B1_Mur4 SINE Alu 1 21 -129 3 1528 1254 99 44 6 chr5 123612730 123612912 -28924347 - B2_Mm2 SINE B2 -5 190 2 3 1528 433 158 255 46 chr5 123612912 123613028 -28924231 + B1_Mus2 SINE Alu 11 150 0 3 1528 538 281 61 0 chr5 123613968 123614082 -28923177 + B1_Mur1 SINE Alu 2 122 -27 3 1528 409 219 110 123 chr5 123614104 123614250 -28923009 + B4 SINE B4 22 165 -127 3 1528 644 279 93 16 chr5 123614630 123614666 -28922593 - B3 SINE B2 -1 215 182 3 1528 207 0 0 0 chr5 123614666 123614689 -28922570 + (TATG)n Simple_repeat Simple_repeat 3 25 0 3 1528 644 279 93 16 chr5 123614689 123614845 -28922414 - B3 SINE B2 -35 181 9 3 1528 1302 20 0 0 chr5 123615243 123615390 -28921869 + B1_Mus2 SINE Alu 1 147 0 3 1528 222 37 0 0 chr5 123615390 123615417 -28921842 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1528 231 88 0 0 chr5 123616294 123616328 -28920931 + (TCCG)n Simple_repeat Simple_repeat 3 36 0 3 1528 225 0 0 0 chr5 123617419 123617444 -28919815 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1528 576 42 0 0 chr5 123617693 123617764 -28919495 + (TC)n Simple_repeat Simple_repeat 2 72 0 3 1528 324 268 35 35 chr5 123618785 123618901 -28918358 - PB1D10 SINE Alu -1 116 1 3 1528 227 31 31 0 chr5 123619024 123619056 -28918203 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 3 1528 1038 78 0 41 chr5 123619056 123619202 -28918057 - B1_Mus2 SINE Alu -7 140 1 3 1528 427 288 26 18 chr5 123619341 123619454 -28917805 + PB1 SINE Alu 11 124 -3 3 1528 676 276 0 7 chr5 123619473 123619615 -28917644 + RSINE1 SINE B4 2 142 -23 3 1528 254 353 74 41 chr5 123619734 123619855 -28917404 + RSINE1 SINE B4 41 165 0 3 1528 355 244 58 73 chr5 123619872 123619893 -28917366 + B4A SINE B4 68 86 -206 3 1528 454 258 50 50 chr5 123619893 123620032 -28917227 + B1F SINE Alu 1 139 -10 3 1528 207 0 0 0 chr5 123620053 123620076 -28917183 + (GA)n Simple_repeat Simple_repeat 1 23 0 3 1528 400 240 103 52 chr5 123620360 123620496 -28916763 + B1F2 SINE Alu 7 149 0 3 1528 180 0 0 0 chr5 123620693 123620713 -28916546 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3 1528 358 312 0 0 chr5 123620716 123620812 -28916447 - ID_B1 SINE B4 -48 176 81 3 1528 387 242 68 61 chr5 123620989 123621121 -28916138 + B1_Mur1 SINE Alu 6 138 -11 3 1528 571 229 103 48 chr5 123622647 123622706 -28914553 + B3A SINE B2 9 66 -132 3 1528 333 0 0 0 chr5 123622706 123622743 -28914516 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1528 571 229 103 48 chr5 123622743 123622848 -28914411 + B3A SINE B2 67 181 -17 3 1528 434 88 14 42 chr5 123622860 123622931 -28914328 + B1_Mur1 SINE Alu 74 142 -7 3 1528 410 346 73 69 chr5 123622997 123623132 -28914127 + B4A SINE B4 3 150 -142 3 1528 902 215 23 23 chr5 123623132 123623308 -28913951 + B3A SINE B2 5 180 -18 3 1528 410 346 73 69 chr5 123623308 123623330 -28913929 + B4A SINE B4 151 164 -128 3 1528 462 36 0 0 chr5 123623330 123623386 -28913873 + (GGAA)n Simple_repeat Simple_repeat 2 57 0 3 1528 410 346 73 69 chr5 123623386 123623516 -28913743 + B4A SINE B4 165 291 -1 3 1528 301 297 115 51 chr5 123623564 123623610 -28913649 + L1M2 LINE L1 3115 3164 -2979 3 1528 1132 88 0 7 chr5 123623610 123623758 -28913501 + B1_Mus2 SINE Alu 1 147 0 3 1528 301 297 115 51 chr5 123623758 123623867 -28913392 + L1M2 LINE L1 3165 3280 -2863 3 1528 1482 58 37 5 chr5 123623889 123624078 -28913181 + B2_Mm2 SINE B2 1 195 0 3 1528 197 282 257 32 chr5 123624705 123624958 -28912301 + L2 LINE L2 2771 3080 -339 3 1528 2652 148 5 2 chr5 123625007 123625426 -28911833 + MTC LTR MaLR 1 420 -1 3 1528 350 320 27 37 chr5 123625551 123625725 -28911534 - MIR3 SINE MIR -18 190 27 3 1528 214 217 167 0 chr5 123626373 123626433 -28910826 + MER91B DNA Tip100 61 130 -60 3 1528 864 135 87 0 chr5 123626809 123626935 -28910324 + B1_Mur3 SINE Alu 4 140 -9 3 1528 593 114 0 34 chr5 123626936 123627054 -28910205 + (TAGA)n Simple_repeat Simple_repeat 3 116 0 3 1528 223 216 65 39 chr5 123627277 123627354 -28909905 + B4A SINE B4 3 81 -211 3 1528 180 0 0 0 chr5 123627451 123627471 -28909788 + (CAAAC)n Simple_repeat Simple_repeat 5 24 0 3 1528 769 126 0 16 chr5 123627779 123627900 -28909359 - PB1D9 SINE Alu -1 119 1 3 1528 339 272 78 0 chr5 123627903 123628006 -28909253 - MIR SINE MIR -115 147 37 3 1528 380 221 0 0 chr5 123628528 123628596 -28908663 - B1F SINE Alu -81 68 1 3 1528 252 274 0 0 chr5 123628610 123628661 -28908598 + L2b LINE L2 3305 3355 -20 3 1528 383 254 59 37 chr5 123628760 123628895 -28908364 - ID_B1 SINE B4 -8 216 79 4 1528 240 298 127 22 chr5 123629632 123629766 -28907493 + MIR3 SINE MIR 3 150 -58 4 1528 205 250 37 37 chr5 123629791 123629845 -28907414 - MIRb SINE MIR -12 256 203 4 1528 436 224 69 30 chr5 123629923 123630024 -28907235 - MIR SINE MIR -77 191 80 4 1528 214 133 0 0 chr5 123630068 123630098 -28907161 - ID4 SINE ID -38 45 16 4 1528 363 287 23 11 chr5 123630111 123630199 -28907060 - ID_B1 SINE B4 -5 219 131 4 1528 322 74 0 36 chr5 123630255 123630311 -28906948 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 4 1528 1209 55 7 0 chr5 123630312 123630458 -28906801 - B1_Mus2 SINE Alu 0 147 1 4 1528 214 149 41 41 chr5 123630483 123630532 -28906727 - MIRc SINE MIR -107 161 113 4 1528 1259 47 0 0 chr5 123632200 123632348 -28904911 - B1_Mus1 SINE Alu 0 148 1 4 1528 261 66 0 50 chr5 123633208 123633248 -28904011 + MIRc SINE MIR 114 154 -114 4 1528 516 245 27 54 chr5 123633252 123633399 -28903860 + B1F1 SINE Alu 1 143 -6 4 1528 1166 89 0 0 chr5 123633409 123633555 -28903704 + B1_Mm SINE Alu 2 147 0 4 1528 440 149 28 18 chr5 123633555 123633623 -28903636 + A-rich Low_complexity Low_complexity 5 72 0 4 1528 1339 50 78 0 chr5 123633623 123633802 -28903457 + B2_Mm2 SINE B2 3 195 0 4 1528 440 149 28 18 chr5 123633802 123633842 -28903417 + A-rich Low_complexity Low_complexity 73 114 0 4 1528 1242 100 0 0 chr5 123633842 123634022 -28903237 + (GA)n Simple_repeat Simple_repeat 1 180 0 4 1528 837 79 0 0 chr5 123634022 123634136 -28903123 + (GAAA)n Simple_repeat Simple_repeat 1 114 0 4 1528 342 293 76 68 chr5 123634668 123634800 -28902459 + B4 SINE B4 55 187 -105 4 1528 563 168 40 0 chr5 123634711 123634812 -28902447 + PB1D9 SINE Alu 6 110 -10 4 1528 534 284 84 24 chr5 123634875 123635041 -28902218 + B4 SINE B4 2 177 -115 4 1528 1110 38 0 0 chr5 123635055 123635188 -28902071 + B2_Mm2 SINE B2 1 133 -62 4 1528 261 0 0 0 chr5 123635190 123635219 -28902040 + (TA)n Simple_repeat Simple_repeat 2 30 0 4 1528 636 14 0 0 chr5 123635219 123635291 -28901968 + (TG)n Simple_repeat Simple_repeat 2 74 0 4 1528 208 137 39 19 chr5 123635338 123635390 -28901869 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1528 1144 135 15 15 chr5 123635495 123635517 -28901742 - B2_Mm2 SINE B2 0 195 174 4 1528 1244 68 0 0 chr5 123635517 123635665 -28901594 + B1_Mus1 SINE Alu 1 148 0 4 1528 1144 135 15 15 chr5 123635665 123635686 -28901573 - B2_Mm2 SINE B2 -22 173 154 4 1528 369 0 0 0 chr5 123635686 123635727 -28901532 + (TATG)n Simple_repeat Simple_repeat 4 44 0 4 1528 1144 135 15 15 chr5 123635727 123635877 -28901382 - B2_Mm2 SINE B2 -42 153 1 4 1528 924 142 0 0 chr5 123636578 123636712 -28900547 - B1_Mus1 SINE Alu -12 136 3 4 1528 1293 94 28 6 chr5 123637250 123637432 -28899827 - B2_Mm2 SINE B2 -8 187 2 4 1528 3152 66 5 2 chr5 123637772 123638167 -28899092 + MTA_Mm LTR MaLR 1 396 0 4 1528 375 78 0 0 chr5 123638376 123638427 -28898832 + (TATG)n Simple_repeat Simple_repeat 2 52 0 4 1528 266 117 61 91 chr5 123638429 123638495 -28898764 - B3 SINE B2 0 216 153 4 1528 345 326 35 28 chr5 123638503 123638645 -28898614 - L1ME1 LINE L1 -226 5953 5811 4 1528 1075 97 0 7 chr5 123638717 123638863 -28898396 + B1_Mur4 SINE Alu 2 146 -4 4 1528 472 267 85 18 chr5 123638885 123639049 -28898210 + B3A SINE B2 7 181 -17 4 1528 487 285 131 0 chr5 123639170 123639307 -28897952 + RSINE1 SINE B4 3 157 -8 4 1528 1063 74 190 0 chr5 123639404 123639567 -28897692 - B2_Mm2 SINE B2 0 195 2 4 1528 233 227 0 0 chr5 123639579 123639623 -28897636 + CT-rich Low_complexity Low_complexity 1 44 0 4 1528 1063 74 190 0 chr5 123640130 123640293 -28896966 - B2_Mm2 SINE B2 0 195 2 4 1528 233 227 0 0 chr5 123640305 123640349 -28896910 + CT-rich Low_complexity Low_complexity 1 44 0 4 1528 724 93 63 0 chr5 123640856 123640991 -28896268 - B2_Mm2 SINE B2 0 193 30 4 1528 460 264 82 0 chr5 123640985 123641095 -28896164 + ID_B1 SINE B4 51 169 -55 4 1528 336 290 43 0 chr5 123641015 123641108 -28896151 + PB1D10 SINE Alu 9 105 -12 4 1528 2176 215 29 150 chr5 123641195 123641890 -28895369 + RMER19C LTR ERVK 1 611 0 4 1528 515 237 26 26 chr5 123641897 123642014 -28895245 + PB1D7 SINE Alu 3 119 -1 4 1528 497 226 29 0 chr5 123642040 123642142 -28895117 + PB1D9 SINE Alu 3 107 -13 4 1528 718 241 25 45 chr5 123642167 123642402 -28894857 + B3A SINE B2 1 216 0 4 1528 266 233 132 40 chr5 123642739 123642815 -28894444 - PB1D10 SINE Alu -1 116 34 4 1528 253 312 71 30 chr5 123642863 123642962 -28894297 + MIR SINE MIR 78 180 -82 4 1528 339 244 26 0 chr5 123643140 123643218 -28894041 - ID4_ SINE ID 0 83 4 4 1528 658 279 87 6 chr5 123643229 123643402 -28893857 - B3A SINE B2 -9 189 3 4 1528 192 77 0 0 chr5 123644361 123644387 -28892872 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 4 1528 714 151 101 0 chr5 123644392 123644511 -28892748 - B1_Mus2 SINE Alu -16 131 1 4 1528 496 296 44 15 chr5 123644615 123644752 -28892507 - RSINE1 SINE B4 -23 142 2 4 1528 339 229 82 24 chr5 123644792 123644877 -28892382 - PB1D7 SINE Alu -29 91 2 4 1528 473 231 59 15 chr5 123644891 123645027 -28892232 - ID_B1 SINE B4 -2 222 81 4 1528 341 191 407 25 chr5 123645693 123645811 -28891448 + RSINE1 SINE B4 3 165 0 4 1528 349 280 9 27 chr5 123645971 123646081 -28891178 + PB1D10 SINE Alu 10 117 0 4 1528 520 213 121 44 chr5 123646082 123646264 -28890995 + RLTR20B3 LTR ERVK 1 229 -348 4 1528 727 101 18 0 chr5 123646264 123646373 -28890886 + ORR1A2 LTR MaLR 1 111 -216 4 1528 593 42 0 0 chr5 123646383 123646454 -28890805 + ORR1A2 LTR MaLR 256 326 0 4 1528 267 104 0 0 chr5 123646627 123646675 -28890584 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1528 586 320 11 28 chr5 123647240 123647417 -28889842 - ID_B1 SINE B4 -2 222 49 4 1528 1152 62 7 0 chr5 123647553 123647699 -28889560 - B1_Mus1 SINE Alu 0 148 2 4 1528 520 245 86 137 chr5 123647748 123647923 -28889336 + MTEa LTR MaLR 242 419 0 4 1528 627 14 0 0 chr5 123648057 123648129 -28889130 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 4 1528 881 112 8 8 chr5 123648133 123648259 -28889000 - B1_Mur2 SINE Alu -14 135 10 4 1528 440 233 91 91 chr5 123648163 123648361 -28888898 - MT2B LTR ERVL -343 258 61 4 1528 719 173 36 50 chr5 123648424 123648564 -28888695 + B1_Mur4 SINE Alu 1 138 -12 4 1528 480 229 0 20 chr5 123648592 123648690 -28888569 - RSINE1 SINE B4 -60 105 10 4 1528 860 257 79 0 chr5 123648695 123648909 -28888350 - B4A SINE B4 -59 233 3 4 1528 186 43 0 0 chr5 123648928 123648951 -28888308 + (TTCCC)n Simple_repeat Simple_repeat 4 26 0 4 1528 489 110 0 0 chr5 123648967 123649040 -28888219 + (TCC)n Simple_repeat Simple_repeat 1 73 0 4 1528 1093 105 44 44 chr5 123649041 123649221 -28888038 - B2_Mm2 SINE B2 -15 180 1 4 1528 2296 143 14 36 chr5 123649221 123649642 -28887617 - RLTR11A2 LTR ERVK -77 450 39 4 1528 527 78 0 13 chr5 123649643 123649721 -28887538 + (TTCTC)n Simple_repeat Simple_repeat 3 79 0 4 1528 1321 62 62 0 chr5 123649752 123649929 -28887330 - B2_Mm2 SINE B2 -4 191 4 4 1528 1053 51 228 13 chr5 123650001 123650159 -28887100 - B2_Mm2 SINE B2 -3 192 1 4 1528 728 135 93 23 chr5 123650259 123650388 -28886871 - B1_Mur1 SINE Alu -10 139 2 4 1528 348 278 56 0 chr5 123650507 123650597 -28886662 - B4A SINE B4 0 292 198 4 1528 1159 87 0 6 chr5 123650576 123650738 -28886521 - B2_Mm2 SINE B2 -8 187 27 4 1528 1178 118 12 6 chr5 123650763 123650777 -28886482 - B2_Mm1t SINE B2 -19 174 161 4 1528 207 0 0 0 chr5 123650777 123650800 -28886459 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 4 1528 1178 118 12 6 chr5 123650800 123650956 -28886303 - B2_Mm1t SINE B2 -33 160 3 4 1528 305 100 0 0 chr5 123650957 123650997 -28886262 - B2_Mm2 SINE B2 -154 41 2 4 1528 518 321 82 23 chr5 123650997 123651206 -28886053 - B4A SINE B4 -70 222 1 4 1528 221 98 0 24 chr5 123652544 123652586 -28884673 + (TA)n Simple_repeat Simple_repeat 1 41 0 4 1528 774 164 19 52 chr5 123652684 123652838 -28884421 - B1_Mur3 SINE Alu 0 149 1 4 1528 903 228 19 14 chr5 123652879 123653093 -28884166 - B3 SINE B2 -1 215 1 4 1528 443 18 18 0 chr5 123653110 123653166 -28884093 + (CATA)n Simple_repeat Simple_repeat 1 57 0 4 1528 333 0 0 0 chr5 123653166 123653203 -28884056 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1528 519 276 17 0 chr5 123653207 123653323 -28883936 - RSINE1 SINE B4 -45 120 3 4 1528 469 214 0 0 chr5 123653417 123653501 -28883758 - PB1D10 SINE Alu -16 101 18 4 1528 263 211 51 90 chr5 123653438 123653516 -28883743 - MT2B2 LTR ERVL -346 238 164 4 1528 364 324 85 65 chr5 123653566 123653919 -28883340 - L1MC4 LINE L1 -226 7816 7457 4 1528 1160 75 7 0 chr5 123654069 123654215 -28883044 - B1_Mus1 SINE Alu 0 148 2 4 1528 480 292 29 32 chr5 123654264 123654428 -28882831 + MTEa LTR MaLR 242 402 -17 4 1528 874 158 7 7 chr5 123654596 123654736 -28882523 - B1_Mur2 SINE Alu 0 149 10 4 1528 409 238 88 98 chr5 123654633 123654838 -28882421 - MT2B LTR ERVL -338 263 61 4 1528 691 208 7 71 chr5 123654901 123655056 -28882203 + B1_Mur4 SINE Alu 1 145 -5 4 1528 488 280 8 33 chr5 123655048 123655170 -28882089 - RSINE1 SINE B4 -45 120 2 4 1528 2330 101 187 5 chr5 123655254 123655623 -28881636 - RLTR10C LTR ERVK 0 436 1 4 1528 10424 62 36 6 chr5 123655623 123657733 -28879526 - MMERVK10C-int LTR ERVK 0 7680 5482 4 1528 4457 10 2 12 chr5 123657733 123658231 -28879028 - MT2_Mm LTR ERVL 0 493 1 4 1528 305 0 0 0 chr5 123658231 123658269 -28878990 - MERVL-int LTR ERVL 0 5485 5448 4 1528 379 179 46 35 chr5 123658269 123658356 -28878903 - ORR1A3-int LTR MaLR -1323 640 553 5 1528 46074 16 6 0 chr5 123658356 123663682 -28873577 - MERVL-int LTR ERVL -125 5360 1 4 1528 4457 10 2 12 chr5 123663682 123664180 -28873079 - MT2_Mm LTR ERVL 0 493 1 4 1528 23034 56 30 20 chr5 123664180 123664493 -28872766 - MMERVK10C-int LTR ERVK -2095 5486 5188 5 1528 1497 52 5 30 chr5 123664493 123664690 -28872569 + B2_Mm1t SINE B2 2 193 0 5 1528 23034 56 30 20 chr5 123664690 123665882 -28871377 - MMERVK10C-int LTR ERVK -2394 5187 3933 5 1528 1683 26 0 0 chr5 123665882 123666073 -28871186 - B2_Mm1t SINE B2 0 193 3 5 1528 23034 56 30 20 chr5 123666073 123666151 -28871108 - MMERVK10C-int LTR ERVK -3649 3932 3868 5 1528 2944 9 0 0 chr5 123666151 123666476 -28870783 + L1Md_A LINE L1 6258 6582 0 5 1528 24964 53 7 7 chr5 123666476 123669600 -28867659 - MMERVK10C-int LTR ERVK -3714 3867 733 5 1528 614 130 0 0 chr5 123669599 123669691 -28867568 - MMERVK10C-int LTR ERVK -7265 316 225 5 1528 236 278 0 18 chr5 123669691 123669746 -28867513 - RLTR27 LTR ERVK -34 275 222 5 1528 325 89 0 0 chr5 123669747 123669792 -28867467 - MMERVK10C-int LTR ERVK -7489 92 48 5 1528 359 304 71 53 chr5 123669792 123669837 -28867422 - ID_B1 SINE B4 -49 175 126 5 1528 2349 98 188 5 chr5 123669837 123670205 -28867054 - RLTR10C LTR ERVK -1 435 1 5 1528 634 226 24 0 chr5 123670205 123670329 -28866930 - B4A SINE B4 -163 129 3 5 1528 537 58 0 0 chr5 123670337 123670406 -28866853 + (TTTC)n Simple_repeat Simple_repeat 1 69 0 5 1528 752 36 63 35 chr5 123670408 123670551 -28866708 + (TCCCC)n Simple_repeat Simple_repeat 2 148 0 5 1528 1065 128 44 44 chr5 123670551 123670731 -28866528 - B2_Mm2 SINE B2 -15 180 1 5 1528 2193 160 26 34 chr5 123670731 123671146 -28866113 - RLTR11A2 LTR ERVK -77 450 39 5 1528 462 79 0 0 chr5 123671147 123671210 -28866049 + (TTCTC)n Simple_repeat Simple_repeat 2 64 0 5 1528 1305 68 62 0 chr5 123671243 123671420 -28865839 - B2_Mm2 SINE B2 -4 191 4 5 1528 430 92 0 17 chr5 123671492 123671603 -28865656 - B2_Mm2 SINE B2 -4 191 47 5 1528 1209 124 6 11 chr5 123671635 123671815 -28865444 - B2_Mm1t SINE B2 -14 179 1 5 1528 292 235 92 0 chr5 123671915 123672013 -28865246 - B1F2 SINE Alu -10 139 33 5 1528 444 147 264 9 chr5 123672034 123672144 -28865115 - B1_Mur1 SINE Alu -10 139 2 5 1528 680 331 70 26 chr5 123672263 123672334 -28864925 - B4A SINE B4 0 292 224 5 1528 1370 70 11 11 chr5 123672334 123672521 -28864738 - B2_Mm2 SINE B2 -7 188 2 5 1528 680 331 70 26 chr5 123672521 123672722 -28864537 - B4A SINE B4 -69 223 8 5 1528 238 200 34 34 chr5 123673629 123673717 -28863542 + (TA)n Simple_repeat Simple_repeat 2 89 0 5 1528 827 159 13 52 chr5 123673745 123673898 -28863361 - B1_Mur3 SINE Alu -2 147 1 5 1528 922 216 19 19 chr5 123673940 123674148 -28863111 - B3 SINE B2 -2 214 7 5 1528 438 258 41 0 chr5 123674135 123674232 -28863027 - RSINE1 SINE B4 -62 103 3 5 1528 186 43 0 0 chr5 123674300 123674323 -28862936 + (GTGTG)n Simple_repeat Simple_repeat 2 24 0 5 1528 487 202 0 0 chr5 123674326 123674410 -28862849 - PB1D10 SINE Alu -16 101 18 5 1528 263 216 49 86 chr5 123674344 123674425 -28862834 - MT2B2 LTR ERVL -343 241 164 5 1528 369 310 91 71 chr5 123674478 123674829 -28862430 - L1MC4 LINE L1 -228 7814 7457 5 1528 377 269 62 101 chr5 123674958 123674984 -28862275 - B4A SINE B4 -46 246 142 5 1528 922 102 7 7 chr5 123674984 123675122 -28862137 - B1_Mus2 SINE Alu -2 145 8 5 1528 462 159 23 124 chr5 123675017 123675146 -28862113 - MT2B LTR ERVL -337 264 149 5 1528 377 269 62 101 chr5 123675122 123675136 -28862123 - B4A SINE B4 -46 141 76 5 1528 189 0 0 0 chr5 123675368 123675389 -28861870 + (CCAA)n Simple_repeat Simple_repeat 2 22 0 5 1528 677 159 309 6 chr5 123675405 123675570 -28861689 - B3 SINE B2 -1 215 1 5 1528 23 0 0 0 chr5 123675578 123675601 -28861658 + AT_rich Low_complexity Low_complexity 1 23 0 5 1528 2040 163 102 26 chr5 123675611 123675959 -28861300 + MTC LTR MaLR 1 381 -40 5 1528 2887 87 15 3 chr5 123675959 123676350 -28860909 + MTA_Mm LTR MaLR 1 396 0 5 1528 2040 163 102 26 chr5 123676350 123676392 -28860867 + MTC LTR MaLR 382 421 0 5 1528 901 242 25 10 chr5 123676392 123676588 -28860671 - B3 SINE B2 -16 200 2 5 1528 2123 176 13 3 chr5 123676660 123677036 -28860223 - RLTR14 LTR ERV1 -2 380 1 5 1528 432 234 211 0 chr5 123677310 123677438 -28859821 + ID_B1 SINE B4 3 157 -67 5 1528 359 281 0 0 chr5 123677596 123677678 -28859581 + ID_B1 SINE B4 143 224 0 5 1528 1027 60 60 0 chr5 123677852 123677985 -28859274 + B1_Mus2 SINE Alu 1 141 -6 5 1528 385 248 87 19 chr5 123678612 123678715 -28858544 - PB1D10 SINE Alu 0 117 8 5 1528 444 261 77 35 chr5 123678901 123678912 -28858347 + B1F SINE Alu 1 83 -66 5 1528 643 242 0 16 chr5 123678912 123679038 -28858221 + ID_B1 SINE B4 98 221 -3 5 1528 243 103 0 0 chr5 123679044 123679083 -28858176 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1528 268 233 68 14 chr5 123679530 123679604 -28857655 + B3 SINE B2 1 78 -138 5 1528 257 265 59 24 chr5 123679604 123679615 -28857644 + RSINE1 SINE B4 2 89 -76 5 1528 467 237 14 0 chr5 123679682 123679821 -28857438 + (TATG)n Simple_repeat Simple_repeat 1 141 0 5 1528 195 42 0 0 chr5 123679892 123679916 -28857343 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5 1528 519 182 30 10 chr5 123679923 123680023 -28857236 - PB1D9 SINE Alu -17 103 2 5 1528 378 275 108 58 chr5 123680120 123680259 -28857000 + B1F SINE Alu 1 146 -3 5 1528 634 315 71 36 chr5 123680268 123680548 -28856711 + B4 SINE B4 1 290 -2 5 1528 225 0 0 0 chr5 123680702 123680727 -28856532 + (TTA)n Simple_repeat Simple_repeat 2 26 0 5 1528 1026 122 14 0 chr5 123680743 123680891 -28856368 + B1_Mur4 SINE Alu 1 150 0 5 1528 226 329 72 16 chr5 123680966 123681216 -28856043 + L1MB5 LINE L1 5114 5377 -769 5 1528 708 233 79 14 chr5 123681218 123681414 -28855845 + B3 SINE B2 1 205 -11 5 1528 632 268 85 5 chr5 123681454 123681704 -28855555 + L1MB5 LINE L1 5424 5693 -491 5 1528 2061 169 202 34 chr5 123681706 123681747 -28855512 + RMER4B LTR ERVK 1 52 -533 5 1528 1190 79 96 6 chr5 123681747 123681925 -28855334 - B2_Mm2 SINE B2 0 195 2 5 1528 2061 169 202 34 chr5 123681925 123682384 -28854875 + RMER4B LTR ERVK 53 585 0 5 1528 381 323 100 70 chr5 123682386 123682586 -28854673 + L1MB5 LINE L1 5708 5913 -261 5 1528 553 282 32 16 chr5 123682600 123682726 -28854533 - B1F1 SINE Alu -21 128 1 5 1528 395 314 36 7 chr5 123682729 123682867 -28854392 - B1F1 SINE Alu -6 143 2 5 1528 283 348 29 52 chr5 123682892 123683065 -28854194 + ORR1E LTR MaLR 1 169 -190 5 1528 313 206 103 0 chr5 123683414 123683482 -28853777 + PB1 SINE Alu 34 108 -19 5 1528 784 226 120 26 chr5 123683835 123684026 -28853233 - ID_B1 SINE B4 -7 217 9 5 1528 239 329 0 27 chr5 123683959 123684034 -28853225 - BC1_Mm scRNA scRNA -79 73 1 5 1528 369 0 0 0 chr5 123684050 123684091 -28853168 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1528 339 270 95 63 chr5 123684216 123684374 -28852885 - RSINE1 SINE B4 -2 163 1 5 1528 29 0 0 0 chr5 123684877 123684906 -28852353 + AT_rich Low_complexity Low_complexity 1 29 0 5 1528 871 159 27 14 chr5 123684917 123685064 -28852195 + B1_Mur3 SINE Alu 1 149 0 5 1528 1121 98 63 32 chr5 123685192 123685381 -28851878 + B2_Mm2 SINE B2 1 195 0 5 1528 699 282 112 35 chr5 123685794 123686132 -28851127 - MLT1D LTR MaLR -50 455 92 5 1528 241 342 52 7 chr5 123686896 123687049 -28850210 - L1MC3 LINE L1 0 7785 7626 5 1528 180 218 80 114 chr5 123687052 123687140 -28850119 - L4 LINE RTE -1130 899 815 5 1528 1044 169 143 0 chr5 123687597 123687786 -28849473 - B3 SINE B2 0 216 1 5 1528 317 354 27 27 chr5 123687796 123687944 -28849315 + Charlie8 DNA MER1_type 72 219 -2209 5 1528 808 252 42 56 chr5 123688025 123688090 -28849169 - ID_B1 SINE B4 -13 211 156 5 1528 1369 111 11 0 chr5 123688090 123688280 -28848979 - B2_Mm1t SINE B2 0 193 2 5 1528 808 252 42 56 chr5 123688280 123688428 -28848831 - ID_B1 SINE B4 -69 155 1 5 1528 226 295 49 0 chr5 123688564 123688625 -28848634 - ID_B1 SINE B4 -77 147 84 5 1528 445 327 96 90 chr5 123688946 123689001 -28848258 - MTEa LTR MaLR 0 379 324 5 1528 1210 55 7 0 chr5 123689001 123689146 -28848113 + B1_Mus2 SINE Alu 2 147 0 5 1528 475 325 64 55 chr5 123689146 123689467 -28847792 - MTEa LTR MaLR -56 323 1 5 1528 432 276 88 2 chr5 123690253 123690515 -28846744 - L1MB8 LINE L1 -212 5962 5673 5 1528 846 114 61 0 chr5 123690641 123690772 -28846487 - B1_Mur4 SINE Alu -1 149 11 5 1528 1115 199 24 9 chr5 123690820 123691033 -28846226 + B3 SINE B2 1 216 0 5 1528 219 333 212 0 chr5 123691079 123691178 -28846081 + PB1 SINE Alu 3 122 -5 5 1528 234 0 0 0 chr5 123691486 123691512 -28845747 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1528 309 292 26 116 chr5 123692081 123692236 -28845023 - MLT1A0 LTR MaLR -223 142 2 5 1528 438 261 71 14 chr5 123692659 123692799 -28844460 - ID_B1 SINE B4 -10 214 67 5 1528 278 237 167 0 chr5 123692916 123693030 -28844229 - L1M5 LINE L1 -1205 4941 4809 5 1528 1294 170 9 5 chr5 123693162 123693386 -28843873 - URR1B DNA MER1_type 0 225 1 5 1528 369 306 119 0 chr5 123693617 123693751 -28843508 - MLT1F1 LTR MaLR -416 153 4 5 1528 279 0 0 0 chr5 123694490 123694521 -28842738 + (TTG)n Simple_repeat Simple_repeat 2 32 0 5 1528 666 154 68 0 chr5 123694533 123694650 -28842609 - B1_Mur3 SINE Alu -23 126 2 5 1528 435 246 117 47 chr5 123694543 123694671 -28842588 - B4 SINE B4 -88 204 68 5 1528 957 94 58 7 chr5 123694692 123694831 -28842428 - B1_Mm SINE Alu -1 146 1 5 1528 399 238 154 71 chr5 123694886 123695153 -28842106 + L1MB7 LINE L1 5791 6079 -105 5 1528 651 71 0 0 chr5 123695307 123695405 -28841854 + (TCCCC)n Simple_repeat Simple_repeat 1 98 0 5 1528 281 273 65 0 chr5 123695960 123696037 -28841222 - ORR1D2 LTR MaLR -288 82 1 5 1528 480 196 84 0 chr5 123697871 123697978 -28839281 + RSINE1 SINE B4 17 132 -33 5 1528 1314 20 0 0 chr5 123698038 123698184 -28839075 + B1_Mus1 SINE Alu 1 146 -2 5 1528 181 0 0 65 chr5 123698184 123698215 -28839044 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 5 1528 707 229 14 0 chr5 123698641 123698781 -28838478 - B1_Mur2 SINE Alu -7 142 1 5 1528 598 266 53 35 chr5 123698824 123699050 -28838209 - Lx8 LINE L1 -7 7466 7237 6 1528 382 291 39 0 chr5 123699076 123699179 -28838080 - ID_B1 SINE B4 -3 221 115 6 1528 342 252 151 0 chr5 123699214 123699333 -28837926 - B1F1 SINE Alu -12 137 1 6 1528 183 282 79 45 chr5 123699433 123699522 -28837737 - L2 LINE L2 -3262 157 66 6 1528 960 99 27 34 chr5 123699661 123699807 -28837452 + B1_Mus2 SINE Alu 3 147 0 6 1528 1019 83 27 27 chr5 123699964 123700112 -28837147 + B1_Mur4 SINE Alu 3 150 0 6 1528 1721 16 5 0 chr5 123700811 123701003 -28836256 - B2_Mm1a SINE B2 0 193 1 6 1528 251 258 112 0 chr5 123701393 123701482 -28835777 - PB1D10 SINE Alu -17 100 2 6 1528 1374 94 5 15 chr5 123701501 123701696 -28835563 - B2_Mm1a SINE B2 0 193 1 6 1528 261 182 0 0 chr5 123701708 123701763 -28835496 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 6 1528 531 158 8 32 chr5 123702477 123702601 -28834658 + CT-rich Low_complexity Low_complexity 3 123 0 6 1528 298 229 104 1 chr5 123702611 123702698 -28834561 - B1F2 SINE Alu -38 89 1 6 1528 21 0 0 0 chr5 123702747 123702768 -28834491 + AT_rich Low_complexity Low_complexity 1 21 0 6 1528 1086 198 20 10 chr5 123702769 123702973 -28834286 - B3 SINE B2 -9 207 2 6 1528 720 0 0 0 chr5 123702981 123703061 -28834198 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 6 1528 189 0 0 0 chr5 123703250 123703271 -28833988 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1528 239 308 95 55 chr5 123703291 123703450 -28833809 - MIRb SINE MIR -45 223 59 6 1528 261 222 14 27 chr5 123703839 123703878 -28833381 + polypurine Low_complexity Low_complexity 3 42 0 6 1528 1137 128 0 0 chr5 123703878 123704058 -28833201 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 1528 261 222 14 27 chr5 123704058 123704076 -28833183 + polypurine Low_complexity Low_complexity 43 60 0 6 1528 1305 83 0 0 chr5 123704076 123704256 -28833003 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 1528 261 222 14 27 chr5 123704256 123704271 -28832988 + polypurine Low_complexity Low_complexity 61 75 0 6 1528 297 238 12 12 chr5 123704390 123704643 -28832616 + GA-rich Low_complexity Low_complexity 1 253 0 6 1528 568 251 63 74 chr5 123704925 123705114 -28832145 + B3A SINE B2 1 187 -11 6 1528 963 89 0 0 chr5 123706442 123706577 -28830682 + (TTTC)n Simple_repeat Simple_repeat 3 137 0 6 1528 874 36 71 0 chr5 123706577 123706689 -28830570 - B1_Mus2 SINE Alu -11 136 17 6 1528 377 245 9 155 chr5 123706691 123706807 -28830452 - B4 SINE B4 -79 213 115 6 1528 972 81 72 22 chr5 123706833 123706972 -28830287 - B1_Mus2 SINE Alu 0 147 2 6 1528 314 320 20 13 chr5 123707301 123707450 -28829809 + CT-rich Low_complexity Low_complexity 2 151 0 6 1528 359 252 17 70 chr5 123707859 123707974 -28829285 - PB1D10 SINE Alu 0 117 9 6 1528 302 139 335 12 chr5 123708038 123708131 -28829128 - RSINE1 SINE B4 -35 130 8 6 1528 414 252 52 92 chr5 123708138 123708250 -28829009 - B4A SINE B4 -64 228 115 6 1528 1102 226 49 115 chr5 123708250 123708659 -28828600 - ORR1C2 LTR MaLR -1 383 2 6 1528 414 252 52 92 chr5 123708659 123708699 -28828560 - B4A SINE B4 -178 114 82 6 1528 545 270 5 70 chr5 123708707 123708832 -28828427 - ID_B1 SINE B4 0 224 107 6 1528 492 18 0 0 chr5 123708832 123708889 -28828370 + (TG)n Simple_repeat Simple_repeat 1 57 0 6 1528 545 270 5 70 chr5 123708889 123708950 -28828309 - ID_B1 SINE B4 -118 106 50 6 1528 366 123 0 0 chr5 123708976 123709033 -28828226 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 6 1528 1326 77 49 11 chr5 123709409 123709593 -28827666 - B2_Mm2 SINE B2 -3 192 2 6 1528 937 263 14 0 chr5 123709816 123710029 -28827230 + B3 SINE B2 1 216 0 6 1528 512 266 134 21 chr5 123710042 123710184 -28827075 - RSINE1 SINE B4 -6 159 2 6 1528 410 299 33 26 chr5 123710205 123710356 -28826903 - RSINE1 SINE B4 -4 161 10 6 1528 195 42 0 0 chr5 123710389 123710413 -28826846 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6 1528 730 111 6 0 chr5 123710429 123710538 -28826721 - B2_Mm2 SINE B2 -82 116 2 6 1528 308 224 141 0 chr5 123710545 123710630 -28826629 + L1MEe LINE L1 705 801 -4053 6 1528 237 305 0 35 chr5 123710632 123710717 -28826542 - ID_B1 SINE B4 -13 211 130 6 1528 1227 62 0 0 chr5 123711170 123711315 -28825944 + B1_Mus2 SINE Alu 1 145 -2 6 1528 215 78 13 147 chr5 123711589 123711630 -28825629 + T-rich Low_complexity Low_complexity 31 70 0 6 1528 1129 79 0 0 chr5 123711630 123711770 -28825489 - B1_Mus1 SINE Alu -7 141 2 6 1528 215 78 13 147 chr5 123711770 123711803 -28825456 + T-rich Low_complexity Low_complexity 6 30 0 6 1528 1373 61 77 0 chr5 123712229 123712410 -28824849 + B2_Mm2 SINE B2 1 195 0 6 1528 231 311 9 28 chr5 123712410 123712516 -28824743 - PB1D10 SINE Alu -13 104 1 6 1528 436 250 0 46 chr5 123712669 123712778 -28824481 + RSINE1 SINE B4 40 143 -22 6 1528 375 23 0 0 chr5 123712800 123712844 -28824415 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1528 225 0 0 0 chr5 123713009 123713034 -28824225 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 6 1528 1030 82 15 0 chr5 123713034 123713168 -28824091 - B1_Mus1 SINE Alu -12 136 1 6 1528 309 225 56 11 chr5 123713283 123713373 -28823886 - MIRb SINE MIR -94 174 81 6 1528 34 24 0 0 chr5 123713373 123713414 -28823845 + AT_rich Low_complexity Low_complexity 1 41 0 6 1528 218 305 163 129 chr5 123714015 123714365 -28822894 - L2b LINE L2 -72 3303 2942 6 1528 1465 48 10 41 chr5 123715087 123715282 -28821977 - B2_Mm2 SINE B2 -6 189 1 6 1528 300 193 18 0 chr5 123715391 123715448 -28821811 - HAL1-3A_ME LINE L1 -826 2032 1975 6 1528 392 104 15 0 chr5 123715450 123715517 -28821742 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1528 566 245 30 48 chr5 123715517 123715684 -28821575 - RSINE1 SINE B4 0 165 2 6 1528 467 211 47 18 chr5 123716341 123716453 -28820806 - PB1D9 SINE Alu -8 142 21 6 1528 255 170 0 0 chr5 123716468 123716521 -28820738 - L1MB4 LINE L1 -1 6179 6127 6 1528 461 277 121 0 chr5 123716547 123716688 -28820571 - RSINE1 SINE B4 -6 159 2 6 1528 979 99 0 60 chr5 123716761 123716912 -28820347 - B1_Mur4 SINE Alu -2 148 7 6 1528 426 305 43 38 chr5 123716944 123716963 -28820296 - B2_Mm1t SINE B2 -8 185 167 6 1528 835 248 28 9 chr5 123716963 123717175 -28820084 + B3 SINE B2 1 216 0 6 1528 678 217 61 12 chr5 123717175 123717339 -28819920 - B3 SINE B2 -27 166 1 6 1528 24 53 0 0 chr5 123717445 123717483 -28819776 + AT_rich Low_complexity Low_complexity 1 38 0 6 1528 1351 98 0 25 chr5 123717632 123717830 -28819429 - B2_Mm2 SINE B2 -2 193 1 6 1528 1187 62 0 0 chr5 123717997 123718135 -28819124 + B1_Mus1 SINE Alu 2 139 -9 6 1528 346 39 39 0 chr5 123718135 123718187 -28819072 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 6 1528 1450 78 16 0 chr5 123718251 123718442 -28818817 + B2_Mm2 SINE B2 1 194 -1 6 1528 1129 188 38 9 chr5 123718559 123718769 -28818490 - B3 SINE B2 0 216 1 6 1528 1201 76 0 0 chr5 123719569 123719714 -28817545 - B1_Mm SINE Alu -2 145 1 6 1528 1231 48 112 18 chr5 123719721 123719890 -28817369 - B2_Mm2 SINE B2 -9 186 2 6 1528 532 215 76 15 chr5 123720282 123720414 -28816845 - B1F1 SINE Alu -9 140 1 6 1528 1015 220 23 41 chr5 123721473 123721691 -28815568 + B3 SINE B2 3 216 0 6 1528 710 89 50 0 chr5 123721798 123721899 -28815360 - B2_Mm2 SINE B2 -88 107 2 6 1528 556 296 15 0 chr5 123721950 123722085 -28815174 - RSINE1 SINE B4 -13 152 16 6 1528 290 115 19 0 chr5 123722257 123722309 -28814950 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1528 756 279 78 31 chr5 123722309 123722564 -28814695 - B4A SINE B4 -25 267 1 6 1528 499 302 150 28 chr5 123722847 123723174 -28814085 - L1MB5 LINE L1 -8 6166 5800 6 1528 373 191 191 0 chr5 123723235 123723319 -28813940 + PB1D7 SINE Alu 15 114 -6 6 1528 432 0 0 0 chr5 123723321 123723369 -28813890 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1528 525 292 45 56 chr5 123723373 123723552 -28813707 + B3A SINE B2 4 180 -36 6 1528 240 35 0 0 chr5 123723552 123723581 -28813678 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1528 444 311 91 81 chr5 123723581 123723611 -28813648 + B3 SINE B2 181 215 -1 6 1528 408 40 0 0 chr5 123723955 123724005 -28813254 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1528 270 0 0 0 chr5 123724143 123724173 -28813086 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1528 596 317 42 62 chr5 123725001 123725290 -28811969 - B4A SINE B4 -2 290 8 6 1528 1283 236 138 5 chr5 123725294 123725392 -28811867 + MTD LTR MaLR 1 116 -303 6 1528 252 0 0 0 chr5 123725392 123725420 -28811839 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 6 1528 1283 236 138 5 chr5 123725420 123725691 -28811568 + MTD LTR MaLR 117 418 -1 6 1528 212 296 99 0 chr5 123725736 123725807 -28811452 - B1_Mus1 SINE Alu -64 84 7 6 1528 333 0 0 0 chr5 123725824 123725861 -28811398 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1528 512 279 8 62 chr5 123726002 123726246 -28811013 - L1MB5 LINE L1 -1633 4507 4277 6 1528 290 265 0 0 chr5 123726252 123726320 -28810939 - MER3 DNA MER1_type -36 173 106 6 1528 318 232 270 10 chr5 123726755 123726793 -28810466 + RSINE1 SINE B4 2 39 -126 6 1528 378 0 0 0 chr5 123726793 123726835 -28810424 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1528 318 232 270 10 chr5 123726835 123726896 -28810363 + RSINE1 SINE B4 40 127 -38 6 1528 432 0 0 0 chr5 123726985 123727033 -28810226 + (TC)n Simple_repeat Simple_repeat 1 48 0 6 1528 24 0 0 0 chr5 123727064 123727088 -28810171 + AT_rich Low_complexity Low_complexity 1 24 0 6 1528 22 0 0 0 chr5 123727270 123727292 -28809967 + AT_rich Low_complexity Low_complexity 1 22 0 6 1528 225 0 0 0 chr5 123727505 123727530 -28809729 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1528 21 0 0 0 chr5 123727827 123727848 -28809411 + AT_rich Low_complexity Low_complexity 1 21 0 7 1528 1426 70 11 5 chr5 123727963 123728149 -28809110 - B2_Mm2 SINE B2 -7 188 2 7 1528 208 135 0 0 chr5 123728149 123728186 -28809073 + (T)n Simple_repeat Simple_repeat 1 37 0 7 1528 251 0 59 0 chr5 123728237 123728271 -28808988 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 7 1528 690 154 108 0 chr5 123728994 123729124 -28808135 - B1_Mur2 SINE Alu -1 148 5 7 1528 369 16 15 73 chr5 123729132 123729200 -28808059 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 7 1528 1165 66 7 13 chr5 123729200 123729354 -28807905 - B2_Mm1a SINE B2 -40 153 1 7 1528 198 103 0 0 chr5 123729354 123729383 -28807876 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 7 1528 189 0 0 0 chr5 123729787 123729808 -28807451 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 7 1528 287 275 14 7 chr5 123730172 123730311 -28806948 + ORR1B1-int LTR MaLR 615 754 -755 7 1528 456 167 24 129 chr5 123730192 123730316 -28806943 + MT2B LTR ERVL 154 264 -337 7 1528 1048 80 7 0 chr5 123730213 123730350 -28806909 + B1_Mus1 SINE Alu 11 148 0 7 1528 204 220 0 57 chr5 123730486 123730539 -28806720 + GA-rich Low_complexity Low_complexity 2 51 0 7 1528 264 391 0 9 chr5 123730653 123730764 -28806495 + MER82 DNA MER2_type 1 110 -543 7 1528 689 163 95 15 chr5 123730829 123730966 -28806293 + B1_Mur3 SINE Alu 2 149 0 7 1528 425 271 10 20 chr5 123730981 123731079 -28806180 + ID_B1 SINE B4 2 98 -126 7 1528 471 313 116 46 chr5 123731390 123731631 -28805628 + MER82 DNA MER2_type 383 640 -13 7 1528 270 0 0 0 chr5 123731658 123731688 -28805571 + (A)n Simple_repeat Simple_repeat 1 30 0 7 1528 279 0 0 0 chr5 123731790 123731821 -28805438 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1528 517 185 142 18 chr5 123731830 123731961 -28805298 + MTD LTR MaLR 43 174 -226 7 23 779 150 0 36 chr5 123731960 123732098 -28805161 + B1_Mur4 SINE Alu 18 150 0 7 1529 622 45 22 11 chr5 123732098 123732188 -28805071 + (GAAAA)n Simple_repeat Simple_repeat 3 93 0 7 1529 906 166 156 2 chr5 123732193 123732393 -28804866 + MTD LTR MaLR 196 411 -8 7 1529 804 94 34 29 chr5 123732394 123732569 -28804690 + CT-rich Low_complexity Low_complexity 2 177 0 7 1529 1223 28 0 27 chr5 123732586 123732733 -28804526 - B1_Mus1 SINE Alu -5 143 1 7 1529 442 231 84 119 chr5 123732923 123732938 -28804321 + ID SINE ID 6 60 -164 7 1529 543 115 45 11 chr5 123732938 123733026 -28804233 + B3 SINE B2 23 113 -103 7 1529 442 231 84 119 chr5 123733026 123733066 -28804193 + ID_B1 SINE B4 61 223 -1 7 1529 660 36 12 0 chr5 123733066 123733149 -28804110 + B1_Mus2 SINE Alu 64 147 0 7 1529 256 186 0 33 chr5 123733637 123733648 -28803611 + (TA)n Simple_repeat Simple_repeat 1 11 0 7 1529 369 0 0 0 chr5 123733648 123733689 -28803570 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1529 256 186 0 33 chr5 123733689 123733738 -28803521 + (TA)n Simple_repeat Simple_repeat 1 48 0 7 1529 780 218 125 16 chr5 123733739 123733995 -28803264 - Lx9 LINE L1 -48 7596 7313 7 1529 231 36 0 0 chr5 123734107 123734135 -28803124 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 7 1529 650 213 28 42 chr5 123734135 123734266 -28802993 - B1_Mur1 SINE Alu -14 135 2 7 1529 712 267 49 6 chr5 123734420 123734582 -28802677 + B3 SINE B2 36 204 -12 7 1529 225 0 0 0 chr5 123734684 123734709 -28802550 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7 1529 268 296 42 0 chr5 123734717 123734788 -28802471 - PB1D10 SINE Alu -7 110 37 7 1529 391 302 8 38 chr5 123734867 123734998 -28802261 + RSINE1 SINE B4 30 156 -9 7 1529 23 33 0 0 chr5 123735525 123735555 -28801704 + AT_rich Low_complexity Low_complexity 1 30 0 7 1529 965 97 0 36 chr5 123735914 123736053 -28801206 - B1_Mus1 SINE Alu -14 134 1 7 1529 237 225 13 66 chr5 123736451 123736527 -28800732 - MER91B DNA Tip100 -96 94 23 7 1529 21 0 0 0 chr5 123736615 123736636 -28800623 + AT_rich Low_complexity Low_complexity 1 21 0 7 1529 790 218 324 12 chr5 123739048 123739292 -28797967 - MTD LTR MaLR -95 324 5 7 1529 185 291 26 104 chr5 123740129 123740244 -28797015 - MIR3 SINE MIR -25 183 78 7 1529 231 178 312 32 chr5 123740451 123740544 -28796715 - PB1D7 SINE Alu 0 120 2 7 1529 1230 73 0 12 chr5 123740577 123740743 -28796516 - B2_Mm2 SINE B2 -30 165 2 7 1529 218 288 177 26 chr5 123740798 123741030 -28796229 - L2a LINE L2 -3 3423 3157 7 1529 221 306 0 0 chr5 123741856 123741905 -28795354 - B1F1 SINE Alu -99 50 2 7 1529 505 257 34 39 chr5 123741982 123742129 -28795130 - PB1D7 SINE Alu -1 149 2 7 1529 225 0 0 0 chr5 123742163 123742188 -28795071 + (GGA)n Simple_repeat Simple_repeat 3 27 0 7 1529 230 116 0 23 chr5 123742463 123742507 -28794752 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1529 935 132 281 0 chr5 123742564 123742731 -28794528 + B3 SINE B2 1 214 -2 7 1529 1166 90 56 17 chr5 123742777 123742948 -28794311 + B2_Mm2 SINE B2 2 181 -14 7 1529 216 0 0 0 chr5 123742948 123742972 -28794287 + (GAAAA)n Simple_repeat Simple_repeat 1 24 0 7 1529 254 288 34 0 chr5 123743044 123743103 -28794156 + RSINE1 SINE B4 92 152 -13 7 1529 1565 43 11 0 chr5 123743200 123743387 -28793872 - B2_Mm1a SINE B2 -3 190 2 7 1529 2622 196 189 48 chr5 123743387 123744163 -28793096 - RMER19B LTR ERVK -16 886 1 7 1529 503 304 123 32 chr5 123744468 123744844 -28792415 + L1M5 LINE L1 5364 5777 -347 7 1529 670 256 62 47 chr5 123745329 123745538 -28791721 + ID_B1 SINE B4 2 223 -69 7 1529 357 301 87 5 chr5 123745660 123745844 -28791415 - L1MB5 LINE L1 -252 5922 5724 7 1529 511 252 36 0 chr5 123746590 123746701 -28790558 + PB1 SINE Alu 13 127 0 7 1529 329 235 99 0 chr5 123746706 123746787 -28790472 + RSINE1 SINE B4 75 163 -2 7 1529 538 176 55 9 chr5 123747235 123747344 -28789915 + PB1D10 SINE Alu 1 114 -3 7 1529 417 222 135 53 chr5 123747610 123747743 -28789516 + RSINE1 SINE B4 1 144 -21 7 1529 742 166 39 137 chr5 123747922 123748104 -28789155 - RSINE1 SINE B4 0 165 2 7 1529 621 104 7 36 chr5 123748234 123748374 -28788885 + (TA)n Simple_repeat Simple_repeat 2 137 0 7 1529 473 210 9 74 chr5 123748682 123748790 -28788469 - B3A SINE B2 -15 183 83 7 1529 2868 69 23 8 chr5 123749212 123749589 -28787670 - MTB LTR MaLR 0 400 24 7 1529 303 28 0 0 chr5 123749589 123749625 -28787634 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1529 2868 69 23 8 chr5 123749625 123749641 -28787618 - MTB LTR MaLR -377 23 1 7 1529 1231 48 7 0 chr5 123749660 123749806 -28787453 + B1_Mus1 SINE Alu 2 148 0 7 1529 268 291 107 57 chr5 123749825 123750000 -28787259 + MIRc SINE MIR 23 206 -56 7 1529 376 259 20 88 chr5 123750845 123750993 -28786266 + ID_B1 SINE B4 2 139 -85 7 1529 303 299 139 22 chr5 123751569 123751706 -28785553 - MIRb SINE MIR -75 193 41 7 1529 755 161 8 8 chr5 123753148 123753273 -28783986 - B1_Mur3 SINE Alu -23 126 2 7 1529 576 207 9 0 chr5 123753280 123753396 -28783863 - RCHARR1 DNA MER1_type -29 945 829 7 1529 940 36 0 0 chr5 123753391 123753503 -28783756 + B1_Mus1 SINE Alu 28 139 -9 7 1529 207 0 0 0 chr5 123753503 123753526 -28783733 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1529 763 279 10 34 chr5 123753527 123753735 -28783524 - RCHARR1 DNA MER1_type -146 828 626 7 1529 472 239 110 0 chr5 123753736 123753845 -28783414 + ID_B1 SINE B4 103 223 -1 7 1529 224 30 30 0 chr5 123754429 123754462 -28782797 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 7 1529 482 213 132 16 chr5 123754488 123754617 -28782642 - B1_Mur2 SINE Alu -1 148 5 7 1529 281 246 33 0 chr5 123755560 123755621 -28781638 - ID SINE ID -150 74 12 7 1529 2281 110 0 0 chr5 123755645 123755963 -28781296 + ORR1A3 LTR MaLR 1 318 -8 7 1529 3443 133 7 46 chr5 123755967 123756552 -28780707 + RMER4B LTR ERVK 24 585 0 7 1529 481 121 11 117 chr5 123756572 123756645 -28780614 + ID_B1 SINE B4 141 214 -10 7 1529 279 0 0 0 chr5 123756645 123756676 -28780583 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 7 1529 481 121 11 117 chr5 123756676 123756696 -28780563 + ID_B1 SINE B4 215 224 0 7 1529 931 95 0 14 chr5 123756756 123756895 -28780364 + URR1B DNA MER1_type 89 225 0 7 1529 582 54 0 0 chr5 123756904 123756978 -28780281 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1529 207 255 0 18 chr5 123757871 123757927 -28779332 + L2c LINE L2 3333 3387 0 7 1529 310 143 43 11 chr5 123758102 123758194 -28779065 + (TG)n Simple_repeat Simple_repeat 1 95 0 7 1529 808 96 11 48 chr5 123758205 123758392 -28778867 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1529 650 250 24 42 chr5 123758425 123758592 -28778667 - RSINE1 SINE B4 0 165 2 7 1529 838 196 91 25 chr5 123758620 123758819 -28778440 + B3 SINE B2 1 212 -4 7 1529 26 30 0 0 chr5 123758821 123758854 -28778405 + AT_rich Low_complexity Low_complexity 1 33 0 7 1529 949 197 114 5 chr5 123758947 123759131 -28778128 + B3 SINE B2 2 205 -11 7 1529 577 230 74 62 chr5 123759253 123759415 -28777844 + ID_B1 SINE B4 48 211 -13 7 1529 431 226 206 0 chr5 123759473 123759575 -28777684 + PB1 SINE Alu 2 124 -3 7 1529 300 179 0 35 chr5 123759582 123759640 -28777619 + ID4 SINE ID 13 68 -15 7 1529 221 252 70 50 chr5 123760902 123761010 -28776249 - MIRc SINE MIR -59 149 45 7 1529 234 0 0 0 chr5 123761098 123761124 -28776135 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1529 1011 281 60 0 chr5 123761356 123761705 -28775554 - L1MB7 LINE L1 -1 6183 5814 7 1529 216 97 0 0 chr5 123761705 123761736 -28775523 + (T)n Simple_repeat Simple_repeat 1 31 0 7 1529 1677 31 0 0 chr5 123761737 123761929 -28775330 - B2_Mm1t SINE B2 -1 192 1 7 1529 917 140 7 20 chr5 123761956 123762102 -28775157 - B1_Mm SINE Alu -1 146 3 7 1529 728 263 20 20 chr5 123762120 123762318 -28774941 - B3A SINE B2 0 198 1 8 1529 211 200 0 0 chr5 123762340 123762380 -28774879 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1529 266 196 20 0 chr5 123762417 123762468 -28774791 - B3A SINE B2 -145 53 2 8 1529 402 196 0 0 chr5 123762468 123762560 -28774699 + (ATG)n Simple_repeat Simple_repeat 1 92 0 8 1529 734 282 106 20 chr5 123762590 123762789 -28774470 - B3 SINE B2 0 216 1 8 1529 473 328 16 0 chr5 123762795 123762981 -28774278 - L1MB7 LINE L1 -364 5814 5626 7 1529 514 281 98 10 chr5 123763204 123763409 -28773850 + Tigger7 DNA MER2_type 215 437 -2054 8 1529 498 214 0 28 chr5 123763716 123763822 -28773437 + ID_B1 SINE B4 121 223 -1 8 1529 216 86 0 0 chr5 123764263 123764298 -28772961 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 8 1529 815 165 6 17 chr5 123764707 123764886 -28772373 + CT-rich Low_complexity Low_complexity 4 180 0 8 1529 783 190 7 14 chr5 123764895 123765039 -28772220 - B1_Mur2 SINE Alu -6 143 1 8 1529 616 303 53 11 chr5 123765040 123765227 -28772032 - B3A SINE B2 -3 195 1 8 1529 231 186 0 0 chr5 123765525 123765568 -28771691 + C-rich Low_complexity Low_complexity 1 43 0 8 1529 413 258 86 0 chr5 123765756 123765884 -28771375 + MER5B DNA MER1_type 7 145 -33 8 1529 419 224 170 7 chr5 123766137 123766272 -28770987 - RSINE1 SINE B4 -6 159 3 8 1529 693 227 168 0 chr5 123766612 123766797 -28770462 + ID_B1 SINE B4 3 218 -6 8 1529 1219 54 0 0 chr5 123766839 123766986 -28770273 + B1_Mus1 SINE Alu 2 148 0 8 1529 581 151 104 2 chr5 123767124 123767242 -28770017 + B1_Mus2 SINE Alu 1 129 -21 8 1529 1115 82 0 26 chr5 123767371 123767522 -28769737 - B1_Mus1 SINE Alu 0 148 2 8 1529 699 205 83 12 chr5 123767523 123767691 -28769568 - B3A SINE B2 -18 180 1 8 1529 690 248 9 12 chr5 123767697 123767871 -28769388 + B3 SINE B2 20 195 -3 8 1529 857 208 0 13 chr5 123768538 123768689 -28768570 + B1_Mur1 SINE Alu 1 149 0 8 1529 389 291 2 1 chr5 123768733 123768823 -28768436 + RSINE1 SINE B4 1 91 -201 8 1529 285 29 0 0 chr5 123768858 123768892 -28768367 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1529 980 182 88 0 chr5 123768929 123769110 -28768149 - B3A SINE B2 0 198 2 8 1529 298 309 105 35 chr5 123769112 123769340 -28767919 - L1M4 LINE L1 -1318 4828 4585 8 1529 292 242 70 127 chr5 123769409 123769478 -28767781 - L1M4 LINE L1 -1573 4573 4523 8 1529 1154 103 97 0 chr5 123769478 123769653 -28767606 + B2_Mm2 SINE B2 1 192 -3 8 1529 292 242 70 127 chr5 123769653 123769796 -28767463 - L1M4 LINE L1 -1624 4522 4373 8 1529 243 146 0 0 chr5 123769911 123769952 -28767307 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1529 1034 108 0 120 chr5 123769971 123770171 -28767088 + B2_Mm2 SINE B2 1 176 -19 8 1529 354 123 133 27 chr5 123770176 123770251 -28767008 - L1M4 LINE L1 -1760 4386 4304 8 1529 811 235 52 52 chr5 123770251 123770462 -28766797 - B3 SINE B2 -4 212 2 8 1529 305 254 122 8 chr5 123770525 123770656 -28766603 - L1MD LINE L1 -2920 3226 3081 8 1529 1389 23 17 0 chr5 123770673 123770850 -28766409 + (TTC)n Simple_repeat Simple_repeat 1 180 0 8 1529 897 182 7 0 chr5 123770850 123770998 -28766261 - B1_Mur1 SINE Alu 0 149 1 8 1529 23 33 0 0 chr5 123771008 123771038 -28766221 + AT_rich Low_complexity Low_complexity 1 30 0 8 1529 414 306 20 27 chr5 123771127 123771275 -28765984 - B1F2 SINE Alu 0 149 3 8 1529 842 237 16 33 chr5 123771481 123771664 -28765595 + B3A SINE B2 1 180 -18 8 1529 296 331 16 103 chr5 123771931 123772030 -28765229 - MLT1C LTR MaLR -296 171 81 8 1529 1739 21 0 0 chr5 123772030 123772223 -28765036 - B2_Mm1a SINE B2 0 193 1 8 1529 296 331 16 103 chr5 123772223 123772308 -28764951 - MLT1C LTR MaLR -387 80 3 8 1529 243 0 0 0 chr5 123772355 123772382 -28764877 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1529 387 239 11 11 chr5 123772892 123772981 -28764278 + RSINE1 SINE B4 4 92 -73 8 1529 328 215 12 12 chr5 123772988 123773068 -28764191 - B1F1 SINE Alu -69 80 1 8 1529 277 304 152 0 chr5 123773453 123773565 -28763694 + RSINE1 SINE B4 2 130 -35 8 1529 369 0 0 0 chr5 123773573 123773614 -28763645 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 1529 459 0 0 0 chr5 123773614 123773664 -28763595 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1529 186 43 0 0 chr5 123773665 123773688 -28763571 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 8 1529 388 194 30 0 chr5 123773708 123773775 -28763484 + ID_B1 SINE B4 82 150 -74 8 1529 681 214 12 67 chr5 123773780 123773945 -28763314 + ID_B1 SINE B4 1 156 -68 8 1529 1198 61 0 0 chr5 123773945 123774092 -28763167 + B1_Mm SINE Alu 1 147 0 8 1529 218 111 0 53 chr5 123774100 123774157 -28763102 + A-rich Low_complexity Low_complexity 1 54 0 8 1529 315 268 0 12 chr5 123774157 123774240 -28763019 + ID_B1 SINE B4 143 224 0 8 1529 729 218 28 7 chr5 123774880 123775023 -28762236 - B1_Mur1 SINE Alu 0 149 4 8 1529 303 28 0 0 chr5 123775037 123775073 -28762186 + (CTG)n Simple_repeat Simple_repeat 2 37 0 8 1529 510 243 10 10 chr5 123775093 123775197 -28762062 - PB1D10 SINE Alu -8 109 6 8 1529 256 259 11 105 chr5 123775120 123775215 -28762044 - MT2B LTR ERVL -361 240 155 8 1529 396 0 0 0 chr5 123775247 123775291 -28761968 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 1529 348 24 0 0 chr5 123775291 123775332 -28761927 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1529 450 265 0 0 chr5 123775332 123775430 -28761829 - RSINE1 SINE B4 -64 101 4 8 1529 419 320 63 46 chr5 123775500 123775785 -28761474 - B4A SINE B4 0 292 3 8 1529 234 263 40 0 chr5 123775799 123775875 -28761384 + ID4 SINE ID 5 83 0 8 1529 235 274 105 9 chr5 123775951 123776065 -28761194 - MLT1F1 LTR MaLR -137 432 308 8 1529 745 198 175 33 chr5 123776232 123776415 -28760844 - B3 SINE B2 -6 210 2 8 1529 193 266 115 79 chr5 123776937 123777076 -28760183 + L2 LINE L2 533 676 -2743 8 1529 842 161 205 18 chr5 123777494 123777665 -28759594 - B3 SINE B2 0 216 14 8 1529 180 0 0 0 chr5 123778009 123778029 -28759230 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 8 1529 912 98 15 0 chr5 123778030 123778163 -28759096 - B1_Mur3 SINE Alu -14 135 1 8 1529 236 266 161 40 chr5 123779116 123779265 -28757994 + MIRb SINE MIR 73 239 -29 8 1529 840 161 7 20 chr5 123779464 123779610 -28757649 - B1_Mur3 SINE Alu 0 149 6 8 1529 346 253 0 0 chr5 123779639 123779718 -28757541 - ID_B1 SINE B4 -9 215 137 8 1529 1420 198 68 28 chr5 123779725 123780185 -28757074 - RMER15 LTR ERVL 0 575 39 8 1529 223 128 0 0 chr5 123780282 123780321 -28756938 - B1F2 SINE Alu -102 47 9 8 1529 218 170 0 78 chr5 123780283 123780334 -28756925 - ID_B1 SINE B4 -97 127 81 8 1529 327 364 55 104 chr5 123780395 123780723 -28756536 - MER58B DNA MER1_type 0 341 30 8 1529 725 187 49 16 chr5 123780787 123780951 -28756308 + ID_B1 SINE B4 66 223 -1 8 1529 1139 104 40 6 chr5 123781117 123781291 -28755968 + B2_Mm2 SINE B2 2 181 -14 8 1529 306 68 403 19 chr5 123781341 123781445 -28755814 + B2_Mm2 SINE B2 47 190 -5 8 1529 279 247 56 0 chr5 123781505 123781594 -28755665 + L1MD3 LINE L1 7883 7976 -19 8 1529 318 333 0 0 chr5 123781617 123781698 -28755561 - ID4 SINE ID -2 81 1 8 1529 1162 28 14 0 chr5 123781840 123781984 -28755275 - B1_Mm SINE Alu -1 146 1 8 1529 692 161 0 17 chr5 123782441 123782558 -28754701 - B3 SINE B2 -78 138 24 8 1529 3682 137 154 47 chr5 123782558 123783345 -28753914 + RMER19B LTR ERVK 1 871 -31 8 1529 655 96 358 7 chr5 123783347 123783484 -28753775 + B2_Mm2 SINE B2 1 185 -10 8 1529 501 141 0 0 chr5 123783979 123784064 -28753195 + (TG)n Simple_repeat Simple_repeat 1 85 0 8 1529 435 52 0 0 chr5 123784063 123784121 -28753138 + (GA)n Simple_repeat Simple_repeat 1 58 0 8 1529 186 43 0 0 chr5 123784328 123784351 -28752908 + (TC)n Simple_repeat Simple_repeat 2 24 0 8 1529 522 248 9 0 chr5 123784392 123784501 -28752758 - RSINE1 SINE B4 -14 151 42 8 1529 280 277 0 0 chr5 123784744 123784809 -28752450 - tRNA-Ala-GCY_ tRNA tRNA 0 75 11 8 1529 976 45 0 43 chr5 123784990 123785130 -28752129 + B1_Mus1 SINE Alu 9 142 -6 8 1529 267 31 0 0 chr5 123785132 123785164 -28752095 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 8 1529 493 175 133 16 chr5 123785410 123785538 -28751721 + B1_Mus1 SINE Alu 1 143 -5 8 1529 240 327 64 19 chr5 123786001 123786157 -28751102 + RSINE1 SINE B4 3 165 0 8 1529 708 177 0 0 chr5 123786158 123786333 -28750926 + (CA)n Simple_repeat Simple_repeat 2 176 0 8 1529 180 0 0 0 chr5 123786362 123786382 -28750877 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1529 234 317 228 24 chr5 123786386 123786403 -28750856 + ID_B1 SINE B4 77 171 -53 8 1529 406 242 20 0 chr5 123786403 123786502 -28750757 + PB1D9 SINE Alu 13 113 -7 8 1529 800 293 84 38 chr5 123786520 123786946 -28750313 + L1MB8 LINE L1 5422 5867 -311 8 1529 218 56 28 0 chr5 123787168 123787204 -28750055 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 8 1529 333 0 0 0 chr5 123787205 123787242 -28750017 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1529 773 157 0 8 chr5 123787242 123787370 -28749889 + B1_Mur3 SINE Alu 23 149 0 8 1529 703 153 0 0 chr5 123787448 123787559 -28749700 - PB1D9 SINE Alu -6 114 4 8 1529 256 229 42 14 chr5 123787596 123787667 -28749592 + B1F SINE Alu 77 149 0 8 1529 553 204 44 0 chr5 123787941 123788054 -28749205 - PB1D9 SINE Alu 0 120 3 8 1529 499 279 14 14 chr5 123788181 123788319 -28748940 - ID_B1 SINE B4 -6 218 81 8 1529 962 177 178 42 chr5 123789136 123789562 -28747697 - RLTR20A LTR ERVK 0 541 1 8 1529 225 307 200 0 chr5 123789562 123789635 -28747624 + B1F1 SINE Alu 15 102 -47 9 1529 344 313 0 83 chr5 123789679 123789787 -28747472 + RSINE1 SINE B4 3 101 -64 9 1529 23 0 0 0 chr5 123789808 123789831 -28747428 + AT_rich Low_complexity Low_complexity 1 23 0 9 1529 1229 164 14 18 chr5 123789882 123790105 -28747154 + URR1B DNA MER1_type 1 222 -3 9 1529 3288 38 0 0 chr5 123790362 123790756 -28746503 - MTA_Mm LTR MaLR -2 394 1 9 1529 282 91 29 57 chr5 123790812 123790917 -28746342 + (TA)n Simple_repeat Simple_repeat 2 103 0 9 1529 421 264 154 0 chr5 123791105 123791215 -28746044 + ID_B1 SINE B4 83 209 -15 9 1529 197 108 27 0 chr5 123791702 123791739 -28745520 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1529 278 323 118 75 chr5 123791791 123791925 -28745334 - B4A SINE B4 -26 266 139 9 1529 1407 34 28 6 chr5 123791925 123792103 -28745156 - B2_Mm2 SINE B2 -12 183 2 9 1529 278 323 118 75 chr5 123792103 123792222 -28745037 - B4A SINE B4 -154 138 2 9 1529 386 53 0 17 chr5 123792302 123792360 -28744899 + (CAAAAA)n Simple_repeat Simple_repeat 4 60 0 9 1529 306 208 122 20 chr5 123792372 123792539 -28744720 - L1MB4 LINE L1 -193 5975 5791 9 1529 204 97 0 0 chr5 123792599 123792630 -28744629 + (TG)n Simple_repeat Simple_repeat 1 31 0 9 1529 333 311 76 0 chr5 123792639 123792758 -28744501 - RSINE1 SINE B4 -34 131 4 9 1529 797 117 19 76 chr5 123793017 123793174 -28744085 - B1_Mus1 SINE Alu 0 148 1 9 1529 244 164 23 92 chr5 123793180 123793238 -28744021 + T-rich Low_complexity Low_complexity 28 83 0 9 1529 552 186 153 15 chr5 123793238 123793369 -28743890 - B1_Mur2 SINE Alu 0 149 1 9 1529 244 164 23 92 chr5 123793369 123793397 -28743862 + T-rich Low_complexity Low_complexity 3 27 0 9 1529 21 0 0 0 chr5 123794465 123794486 -28742773 + GC_rich Low_complexity Low_complexity 1 21 0 9 1529 195 139 0 0 chr5 123794495 123794531 -28742728 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1529 221 83 28 0 chr5 123794590 123794626 -28742633 + (TC)n Simple_repeat Simple_repeat 1 37 0 9 1529 22 35 0 0 chr5 123794819 123794848 -28742411 + GC_rich Low_complexity Low_complexity 1 29 0 9 1529 213 94 0 0 chr5 123794939 123794971 -28742288 + (CGG)n Simple_repeat Simple_repeat 3 34 0 9 1529 21 0 0 0 chr5 123795154 123795175 -28742084 + GC_rich Low_complexity Low_complexity 1 21 0 9 1529 240 35 0 0 chr5 123795190 123795219 -28742040 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1529 180 250 186 20 chr5 123796785 123796887 -28740372 + MIRc SINE MIR 75 193 -75 9 1529 349 154 12 37 chr5 123797124 123797205 -28740054 + MER53 DNA hAT 1 79 -114 9 1529 579 271 0 0 chr5 123797227 123797356 -28739903 + ID_B1 SINE B4 95 223 -1 9 1529 246 319 79 29 chr5 123797236 123797375 -28739884 - YREP_Mm Unknown Unknown -1518 294 149 9 1529 206 32 32 0 chr5 123797410 123797441 -28739818 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1529 314 233 80 23 chr5 123797455 123797543 -28739716 - MER53 DNA hAT -76 117 25 9 1529 1254 81 48 0 chr5 123798190 123798376 -28738883 + B2_Mm2 SINE B2 1 195 0 9 1529 1081 88 0 0 chr5 123798745 123798893 -28738366 - B1_Mus1 SINE Alu 0 148 1 9 1529 304 288 212 0 chr5 123799231 123799349 -28737910 - RSINE1 SINE B4 -21 144 2 9 1529 186 133 0 0 chr5 123799351 123799381 -28737878 + (TTA)n Simple_repeat Simple_repeat 1 30 0 9 1529 28 29 0 0 chr5 123799746 123799781 -28737478 + AT_rich Low_complexity Low_complexity 1 35 0 9 1529 191 36 0 35 chr5 123799886 123799915 -28737344 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 9 1529 1135 57 0 0 chr5 123799919 123800060 -28737199 - B1_Mus2 SINE Alu -6 141 1 9 1529 1185 66 54 0 chr5 123800060 123800226 -28737033 - B2_Mm1t SINE B2 -17 176 2 9 1529 194 222 0 22 chr5 123801154 123801200 -28736059 + MIR SINE MIR 30 74 -188 9 1529 231 287 44 33 chr5 123801671 123801761 -28735498 - MIRb SINE MIR -152 116 26 9 1529 269 289 24 0 chr5 123803525 123803608 -28733651 + MER5A DNA MER1_type 48 132 -57 9 1529 288 0 0 0 chr5 123803795 123803827 -28733432 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1529 555 270 54 0 chr5 123803834 123803982 -28733277 - RSINE1 SINE B4 -8 157 2 9 1529 333 0 0 0 chr5 123804055 123804092 -28733167 + (TA)n Simple_repeat Simple_repeat 1 37 0 9 1529 193 151 19 19 chr5 123804151 123804187 -28733072 + (TA)n Simple_repeat Simple_repeat 2 38 0 9 1529 258 32 0 0 chr5 123804187 123804218 -28733041 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1529 193 151 19 19 chr5 123804218 123804235 -28733024 + (TA)n Simple_repeat Simple_repeat 1 17 0 9 1529 365 217 0 89 chr5 123804235 123804336 -28732923 - B1_Mur2 SINE Alu -56 93 2 9 1529 230 291 12 25 chr5 123804266 123804347 -28732912 - B4 SINE B4 -136 156 77 9 1529 232 222 37 0 chr5 123804452 123804506 -28732753 + ID4_ SINE ID 6 61 -22 9 1529 573 248 16 16 chr5 123804549 123804672 -28732587 + RSINE1 SINE B4 18 140 -25 9 1529 735 288 26 0 chr5 123804795 123804986 -28732273 - B3 SINE B2 -10 206 11 9 1529 466 139 13 0 chr5 123805354 123805433 -28731826 + ID4 SINE ID 1 80 -3 9 1529 210 91 0 0 chr5 123805501 123805534 -28731725 + (CCCCCA)n Simple_repeat Simple_repeat 5 37 0 9 1529 469 261 43 9 chr5 123806929 123807045 -28730214 + B1F SINE Alu 10 129 -20 9 1529 994 67 0 56 chr5 123807045 123807188 -28730071 + B1_Mus1 SINE Alu 1 135 -13 9 1529 412 337 62 29 chr5 123807572 123807780 -28729479 - B3 SINE B2 0 216 2 9 1529 490 238 29 0 chr5 123807780 123807862 -28729397 - B1F SINE Alu -34 115 31 9 1529 624 196 0 9 chr5 123807970 123808083 -28729176 - RSINE1 SINE B4 -51 114 3 9 1529 1798 148 166 11 chr5 123808243 123808605 -28728654 - MTC LTR MaLR -3 418 1 9 1529 415 241 25 51 chr5 123808747 123808865 -28728394 + PB1D10 SINE Alu 3 117 0 9 1529 610 273 32 0 chr5 123808884 123809038 -28728221 + ID_B1 SINE B4 2 160 -64 9 1529 241 328 79 32 chr5 123809112 123809287 -28727972 + MIRb SINE MIR 33 220 -48 9 1529 247 221 47 49 chr5 123809286 123809409 -28727850 - MIRb SINE MIR -74 194 79 9 1529 321 272 12 0 chr5 123809992 123810073 -28727186 + ID_B1 SINE B4 83 164 -60 9 1529 889 121 176 0 chr5 123810106 123810271 -28726988 + B2_Mm2 SINE B2 1 194 -1 9 1529 222 37 0 0 chr5 123810284 123810311 -28726948 + (GAA)n Simple_repeat Simple_repeat 1 27 0 9 1529 425 258 24 48 chr5 123810411 123810537 -28726722 + PB1 SINE Alu 3 125 -2 9 1529 582 218 36 66 chr5 123810841 123811008 -28726251 + U1 snRNA snRNA 2 163 -2 9 1529 21 0 0 0 chr5 123811008 123811029 -28726230 + AT_rich Low_complexity Low_complexity 1 21 0 9 1529 669 251 18 18 chr5 123811544 123811714 -28725545 + ID_B1 SINE B4 55 224 0 9 1529 213 366 30 30 chr5 123811733 123811902 -28725357 - L2a LINE L2 -261 3165 2997 9 1529 962 190 49 24 chr5 123812211 123812416 -28724843 + B3 SINE B2 6 215 -1 9 1529 232 328 15 0 chr5 123812426 123812493 -28724766 + ID4 SINE ID 3 70 -13 9 1529 265 41 0 75 chr5 123812493 123812546 -28724713 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 9 1529 249 33 0 0 chr5 123812546 123812576 -28724683 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1529 639 236 89 24 chr5 123812608 123812777 -28724482 + ID_B1 SINE B4 7 186 -38 9 1529 1564 169 163 0 chr5 123813363 123813713 -28723546 - MTD LTR MaLR -12 407 1 9 1529 233 208 21 0 chr5 123813802 123813850 -28723409 + ID4_ SINE ID 19 67 -16 9 1529 531 45 0 0 chr5 123813851 123813917 -28723342 + (CA)n Simple_repeat Simple_repeat 2 67 0 9 1529 21 0 0 0 chr5 123815139 123815160 -28722099 + GC_rich Low_complexity Low_complexity 1 21 0 9 1529 404 233 11 11 chr5 123815293 123815408 -28721851 - PB1D9 SINE Alu -8 112 2 9 1529 30 0 0 0 chr5 123815426 123815456 -28721803 + AT_rich Low_complexity Low_complexity 1 30 0 9 1529 796 270 35 5 chr5 123815459 123815656 -28721603 - B3 SINE B2 -13 203 1 9 1529 312 250 97 93 chr5 123815693 123815818 -28721441 + PB1D10 SINE Alu 3 120 -7 9 1529 427 336 16 83 chr5 123816063 123816375 -28720884 - B4A SINE B4 0 292 2 9 1529 207 0 0 0 chr5 123816494 123816517 -28720742 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1529 1290 84 10 10 chr5 123816556 123816748 -28720511 - B2_Mm1t SINE B2 0 193 2 9 1529 994 83 0 65 chr5 123816758 123816913 -28720346 - B1_Mus2 SINE Alu 0 147 3 9 1529 652 165 0 25 chr5 123816990 123817108 -28720151 + B1_Mus2 SINE Alu 33 147 0 9 1529 349 216 24 0 chr5 123817250 123817330 -28719929 - PB1D10 SINE Alu -7 113 23 9 1529 650 254 75 42 chr5 123818330 123818544 -28718715 + ID_B1 SINE B4 2 222 -2 9 1529 520 280 21 0 chr5 123818546 123818689 -28718570 + RSINE1 SINE B4 1 146 -19 9 1529 920 214 64 5 chr5 123818741 123818943 -28718316 + B3 SINE B2 2 215 -1 9 1529 1032 66 0 14 chr5 123819621 123819759 -28717500 - B1_Mus1 SINE Alu -12 136 1 9 1529 239 362 64 32 chr5 123819955 123819982 -28717277 + ID_B1 SINE B4 51 130 -94 9 1529 319 346 0 9 chr5 123819982 123820087 -28717172 + PB1D10 SINE Alu 1 104 -13 9 1529 239 362 64 32 chr5 123820087 123820112 -28717147 + ID_B1 SINE B4 131 212 -12 9 1529 225 139 0 0 chr5 123820911 123820954 -28716305 + (CCCCCT)n Simple_repeat Simple_repeat 2 44 0 9 1529 196 77 0 49 chr5 123822614 123822655 -28714604 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 9 1529 24 0 0 0 chr5 123824054 123824078 -28713181 + AT_rich Low_complexity Low_complexity 1 24 0 9 1529 24 32 0 0 chr5 123824218 123824249 -28713010 + AT_rich Low_complexity Low_complexity 1 31 0 1 1529 905 92 0 0 chr5 123824434 123824557 -28712702 + B2_Mm2 SINE B2 1 123 -72 1 1529 590 182 9 9 chr5 123824557 123824668 -28712591 + PB1D9 SINE Alu 2 112 -8 1 1529 423 213 103 32 chr5 123824685 123824811 -28712448 + B1F1 SINE Alu 1 135 -14 1 1529 690 155 6 98 chr5 123824869 123825033 -28712226 - URR1B DNA MER1_type 0 225 77 1 1529 315 0 0 0 chr5 123825037 123825072 -28712187 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 1 1529 1189 73 89 11 chr5 123825072 123825252 -28712007 - B2_Mm2 SINE B2 0 195 2 1 1529 289 281 42 105 chr5 123825314 123825457 -28711802 + RSINE1 SINE B4 30 163 -2 1 1529 329 200 335 51 chr5 123825459 123825617 -28711642 + ID_B1 SINE B4 21 223 -1 1 1529 1165 61 0 0 chr5 123825622 123825769 -28711490 + B1_Mus2 SINE Alu 1 147 0 1 1529 204 40 0 0 chr5 123825770 123825795 -28711464 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 1 1529 1556 116 255 75 chr5 123825976 123826360 -28710899 + RLTR11B LTR ERVK 1 453 0 1 1529 419 274 8 117 chr5 123826389 123826517 -28710742 - PB1D10 SINE Alu 0 117 4 1 1529 24 0 0 0 chr5 123826517 123826541 -28710718 + GC_rich Low_complexity Low_complexity 1 24 0 1 1529 180 0 0 0 chr5 123826867 123826887 -28710372 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1529 1026 51 65 0 chr5 123827036 123827174 -28710085 + B1_Mus2 SINE Alu 1 147 0 1 1529 300 275 0 24 chr5 123827744 123827826 -28709433 + MLT1K LTR MaLR 189 268 -327 1 1529 200 280 140 70 chr5 123828277 123828377 -28708882 + MIR SINE MIR 59 165 -97 1 1529 216 289 43 32 chr5 123828960 123829053 -28708206 - MIRc SINE MIR -61 207 114 1 1529 566 296 48 16 chr5 123829134 123829323 -28707936 + MER58A DNA MER1_type 30 224 0 1 1529 548 262 7 28 chr5 123829379 123829524 -28707735 + ID_B1 SINE B4 81 222 -2 1 1529 258 32 0 0 chr5 123830123 123830154 -28707105 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1 1529 1385 51 17 0 chr5 123830225 123830402 -28706857 - B2_Mm2 SINE B2 -14 181 2 1 1529 246 347 0 0 chr5 123830600 123830675 -28706584 + B1F1 SINE Alu 1 75 -74 1 1529 559 117 184 0 chr5 123830676 123830779 -28706480 + B3 SINE B2 9 130 -86 1 1529 239 0 0 31 chr5 123830791 123830823 -28706436 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 1 1529 353 284 253 0 chr5 123830995 123831157 -28706102 + B3 SINE B2 1 203 -13 1 1529 782 182 7 7 chr5 123831197 123831346 -28705913 + B1_Mur4 SINE Alu 2 150 0 1 1529 485 215 8 69 chr5 123831395 123831525 -28705734 + ID_B1 SINE B4 103 224 0 1 1529 493 331 77 0 chr5 123831528 123831709 -28705550 - B3 SINE B2 -13 203 9 1 1529 642 234 28 0 chr5 123832520 123832661 -28704598 + B1_Mur2 SINE Alu 2 146 -3 1 1529 674 153 76 8 chr5 123832661 123832792 -28704467 + B1_Mus1 SINE Alu 1 141 -7 1 1529 608 176 89 13 chr5 123832858 123833082 -28704177 + RMER17C LTR ERVK 13 253 -157 1 1529 1025 224 71 13 chr5 123833058 123833366 -28703893 + RMER17C LTR ERVK 85 410 0 1 1529 275 314 164 33 chr5 123833370 123833492 -28703767 + B3A SINE B2 59 196 -2 1 1529 390 21 0 0 chr5 123833500 123833547 -28703712 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 1 1529 934 108 0 8 chr5 123833559 123833690 -28703569 - B2_Mm2 SINE B2 -65 130 1 1 1529 180 152 0 0 chr5 123833709 123833742 -28703517 + GA-rich Low_complexity Low_complexity 3 35 0 1 1529 562 264 41 7 chr5 123833746 123833891 -28703368 + RSINE1 SINE B4 10 159 -6 1 1529 1128 251 69 25 chr5 123834076 123834395 -28702864 + MTEa LTR MaLR 1 333 -46 1 1529 479 241 0 57 chr5 123834389 123834512 -28702747 - PB1D10 SINE Alu -1 116 1 1 1529 351 296 107 56 chr5 123834513 123834639 -28702620 - ID_B1 SINE B4 -17 207 71 1 1529 290 100 0 39 chr5 123834639 123834691 -28702568 + (TATG)n Simple_repeat Simple_repeat 2 51 0 1 1529 351 296 107 56 chr5 123834691 123834761 -28702498 - ID SINE ID -154 70 1 1 1529 376 232 18 108 chr5 123834807 123834918 -28702341 + B1F SINE Alu 48 148 -1 1 1529 804 204 0 26 chr5 123834944 123835095 -28702164 + B1_Mur1 SINE Alu 2 148 -1 1 1529 524 160 10 0 chr5 123835202 123835302 -28701957 + (TA)n Simple_repeat Simple_repeat 1 101 0 1 1529 342 194 15 15 chr5 123835634 123835702 -28701557 + ID_B1 SINE B4 95 162 -62 1 1529 4152 130 87 16 chr5 123835704 123836409 -28700850 - RMER6A LTR ERVK -1 755 1 1 1529 1294 58 76 0 chr5 123836439 123836611 -28700648 - B2_Mm2 SINE B2 -10 185 1 1 1529 1228 193 19 0 chr5 123836637 123836849 -28700410 - B3 SINE B2 0 216 1 1 1529 222 237 85 0 chr5 123836877 123836936 -28700323 + B3A SINE B2 1 64 -134 1 1529 1266 213 158 15 chr5 123836945 123837274 -28699985 + MTD LTR MaLR 44 419 0 1 1529 979 299 66 113 chr5 123837274 123837525 -28699734 + MTD-int LTR MaLR 1 236 -1022 1 1529 1011 80 0 0 chr5 123837525 123837663 -28699596 + (CATATA)n Simple_repeat Simple_repeat 4 141 0 1 1529 979 299 66 113 chr5 123837663 123837786 -28699473 + MTD-int LTR MaLR 237 367 -891 1 1529 1494 73 5 0 chr5 123837786 123837978 -28699281 + B2_Mm1a SINE B2 1 193 0 1 1529 1245 254 33 87 chr5 123837978 123838434 -28698825 + MTD-int LTR MaLR 292 792 -466 1 1529 285 264 31 192 chr5 123838450 123838741 -28698518 - RMER10A LTR ERVL -27 415 172 1 1529 860 239 84 32 chr5 123838935 123839229 -28698030 + MTD-int LTR MaLR 784 1363 -217 1 1529 947 112 27 40 chr5 123839236 123839385 -28697874 - B1_Mus1 SINE Alu 0 148 2 1 1529 327 240 112 20 chr5 123839440 123839538 -28697721 + MTA_Mm LTR MaLR 1 107 -289 1 1529 624 222 0 0 chr5 123839555 123839699 -28697560 + CT-rich Low_complexity Low_complexity 2 145 0 1 1529 689 208 0 8 chr5 123839727 123839853 -28697406 + B1_Mur1 SINE Alu 24 148 -1 1 1529 257 266 34 102 chr5 123840131 123840152 -28697107 - PB1D10 SINE Alu -18 99 18 1 1529 264 269 30 0 chr5 123840152 123840219 -28697040 - ID_B1 SINE B4 -57 167 99 1 1529 748 280 24 9 chr5 123840577 123840790 -28696469 - B3 SINE B2 0 216 1 1 1529 475 298 6 69 chr5 123841267 123841361 -28695898 - RLTR20D LTR ERVK 0 578 492 1 1529 438 20 0 0 chr5 123841361 123841412 -28695847 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1529 237 33 0 0 chr5 123841412 123841441 -28695818 + (GA)n Simple_repeat Simple_repeat 2 31 0 1 1529 475 298 6 69 chr5 123841441 123841518 -28695741 - RLTR20D LTR ERVK -87 491 418 1 1529 807 219 83 61 chr5 123841502 123841779 -28695480 - RLTR20D LTR ERVK -285 283 1 1 1529 1386 82 11 0 chr5 123841949 123842133 -28695126 - B2_Mm1t SINE B2 -7 186 1 1 1529 222 246 42 28 chr5 123842202 123842250 -28695009 + B1_Mur1 SINE Alu 37 85 -64 1 1529 2151 182 24 34 chr5 123842250 123842361 -28694898 + MTD LTR MaLR 1 103 -316 1 1529 1699 31 0 0 chr5 123842361 123842553 -28694706 - B2_Mm1a SINE B2 -1 192 1 1 1529 2151 182 24 34 chr5 123842553 123842856 -28694403 + MTD LTR MaLR 104 411 -8 1 1529 846 206 7 0 chr5 123842900 123843041 -28694218 - B1_Mur3 SINE Alu -6 143 2 1 1529 414 170 8 145 chr5 123842939 123843056 -28694203 - MT2B LTR ERVL -344 257 157 1 1529 651 263 131 64 chr5 123843153 123843572 -28693687 - Lx9 LINE L1 -20 7624 7178 1 1529 231 143 284 54 chr5 123843594 123843668 -28693591 + B1_Mur1 SINE Alu 59 149 0 1 1529 456 271 87 36 chr5 123843708 123843846 -28693413 - RSINE1 SINE B4 -15 150 6 1 1529 22 0 0 0 chr5 123843852 123843874 -28693385 + AT_rich Low_complexity Low_complexity 1 22 0 1 1529 394 267 164 49 chr5 123843877 123843999 -28693260 - ID_B1 SINE B4 -7 217 82 1 1529 206 354 12 12 chr5 123844273 123844356 -28692903 + MIRm SINE MIR 71 153 -123 1 1529 23 33 0 0 chr5 123844838 123844868 -28692391 + GC_rich Low_complexity Low_complexity 1 30 0 1 1529 27 73 0 0 chr5 123845085 123845140 -28692119 + GC_rich Low_complexity Low_complexity 1 55 0 1 1529 309 213 34 92 chr5 123846090 123846209 -28691050 - PB1D10 SINE Alu -1 116 5 1 1529 476 268 33 50 chr5 123846642 123846790 -28690469 - B1F1 SINE Alu -5 145 2 1 1529 293 331 77 45 chr5 123846790 123846841 -28690418 - B4 SINE B4 -202 90 35 1 1529 280 211 37 73 chr5 123846912 123846994 -28690265 - PB1 SINE Alu 0 127 49 1 1529 304 262 23 45 chr5 123848160 123848248 -28689011 - PB1D7 SINE Alu -25 95 10 1 1529 460 263 9 9 chr5 123848713 123848828 -28688431 + PB1D10 SINE Alu 1 115 -2 1 1529 1480 78 16 0 chr5 123849136 123849328 -28687931 - B2_Mm2 SINE B2 0 195 1 1 1529 490 351 23 0 chr5 123849430 123849561 -28687698 - RSINE1 SINE B4 -29 136 3 1 1529 1061 108 12 0 chr5 123849645 123849811 -28687448 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 1 1529 478 190 293 0 chr5 123849812 123849979 -28687280 - B3 SINE B2 0 216 1 1 1529 423 0 0 0 chr5 123849997 123850044 -28687215 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1529 309 159 62 31 chr5 123850354 123850419 -28686840 - ID_B1 SINE B4 0 224 158 1 1529 255 170 0 0 chr5 123850449 123850496 -28686763 + (TATG)n Simple_repeat Simple_repeat 1 47 0 1 1529 498 291 127 46 chr5 123850537 123850601 -28686658 - B4 SINE B4 -11 281 217 1 1529 1618 41 0 5 chr5 123850601 123850796 -28686463 - B2_Mm2 SINE B2 0 195 2 1 1529 498 291 127 46 chr5 123850796 123850990 -28686269 - B4 SINE B4 -76 216 3 1 1529 380 246 23 189 chr5 123850994 123851169 -28686090 - ID_B1 SINE B4 -71 153 8 1 1529 219 139 0 0 chr5 123851481 123851517 -28685742 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1529 709 224 6 58 chr5 123851807 123851963 -28685296 + ID_B1 SINE B4 76 223 -1 1 1529 1591 47 0 5 chr5 123851977 123852171 -28685088 + B2_Mm2 SINE B2 3 195 0 1 1529 387 182 0 0 chr5 123852234 123852311 -28684948 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1529 600 273 26 22 chr5 123852382 123852607 -28684652 - RSINE1 SINE B4 -64 228 2 1 1529 212 321 0 0 chr5 123852612 123852665 -28684594 - ID4 SINE ID -25 58 6 1 1529 971 240 248 32 chr5 123852815 123853094 -28684165 - RMER4B LTR ERVK -42 543 179 1 1529 1595 37 16 0 chr5 123853094 123853284 -28683975 + B2_Mm2 SINE B2 2 194 -1 1 1529 971 240 248 32 chr5 123853284 123853383 -28683876 - RMER4B LTR ERVK -407 178 83 1 1529 1255 111 28 0 chr5 123853464 123853645 -28683614 - B2_Mm2 SINE B2 -9 186 1 1 1529 252 0 0 0 chr5 123853691 123853719 -28683540 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1529 1075 300 89 32 chr5 123853737 123854140 -28683119 + MLT1D LTR MaLR 27 452 -53 1 1529 1283 88 0 11 chr5 123854131 123854314 -28682945 - B2_Mm2 SINE B2 0 195 15 1 1529 241 273 167 0 chr5 123854362 123854428 -28682831 - B1_Mur3 SINE Alu -65 84 8 1 1529 217 373 0 0 chr5 123854379 123854438 -28682821 - B4A SINE B4 -151 141 83 1 1529 232 291 24 48 chr5 123854443 123854526 -28682733 - B3A SINE B2 -4 194 114 1 1529 690 296 111 41 chr5 123854477 123854748 -28682511 - B4A SINE B4 -2 290 1 1 1529 299 313 0 0 chr5 123854784 123854851 -28682408 - PB1D10 SINE Alu -49 68 2 1 1529 182 283 78 62 chr5 123854920 123854984 -28682275 - L4 LINE RTE -1368 661 597 1 1529 362 275 0 0 chr5 123855110 123855190 -28682069 - ID4 SINE ID 0 83 4 1 1529 356 301 106 0 chr5 123855199 123855312 -28681947 - PB1 SINE Alu -2 125 1 1 1529 255 45 64 64 chr5 123855333 123855380 -28681879 - B1F SINE Alu 0 149 103 1 1529 335 74 296 0 chr5 123855344 123855398 -28681861 - ID_B1 SINE B4 -8 216 147 1 1529 3405 98 115 9 chr5 123855399 123855722 -28681537 + RMER6A LTR ERVK 3 376 -380 1 1529 414 0 0 0 chr5 123855722 123855768 -28681491 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1529 3405 98 115 9 chr5 123855768 123856018 -28681241 + RMER6A LTR ERVK 377 635 -121 1 1529 408 117 0 0 chr5 123856031 123856108 -28681151 + (GA)n Simple_repeat Simple_repeat 2 78 0 1 1529 254 268 161 94 chr5 123856154 123856409 -28680850 - B4 SINE B4 -18 274 3 1 1529 382 77 0 0 chr5 123856487 123856539 -28680720 + B1_Mus1 SINE Alu 1 52 -96 1 1529 183 93 73 18 chr5 123856553 123856608 -28680651 + (CAAAC)n Simple_repeat Simple_repeat 2 59 0 1 1529 551 216 69 0 chr5 123856615 123856731 -28680528 - B3 SINE B2 -82 134 11 1 1529 821 134 0 0 chr5 123856760 123856879 -28680380 - B1_Mur2 SINE Alu -2 147 29 1 1529 327 284 14 0 chr5 123856887 123856961 -28680298 - ID_B1 SINE B4 -64 160 86 1 1529 250 294 100 56 chr5 123857727 123857907 -28679352 - L2a LINE L2 -186 3240 3053 1 1529 204 67 0 0 chr5 123858137 123858167 -28679092 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1 1529 324 194 14 29 chr5 123858606 123858675 -28678584 - PB1D7 SINE Alu -2 118 51 1 1529 646 157 94 8 chr5 123858681 123858809 -28678450 - B1_Mur3 SINE Alu -1 148 10 1 1529 392 229 99 53 chr5 123858809 123858833 -28678426 - ID_B1 SINE B4 -1 223 65 1 1529 1241 41 7 0 chr5 123859098 123859244 -28678015 + B1_Mm SINE Alu 1 147 0 1 1529 636 50 0 0 chr5 123859247 123859327 -28677932 + (GAA)n Simple_repeat Simple_repeat 2 81 0 1 1529 348 339 76 8 chr5 123859522 123859653 -28677606 - ID_B1 SINE B4 -84 140 1 1 1529 353 271 101 42 chr5 123859796 123860118 -28677141 - L1ME1 LINE L1 0 6184 5847 1 1529 21 0 0 0 chr5 123860126 123860147 -28677112 + AT_rich Low_complexity Low_complexity 1 21 0 1 1529 261 0 0 0 chr5 123860157 123860186 -28677073 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 1 1529 247 318 88 52 chr5 123860199 123860335 -28676924 - B1F1 SINE Alu -5 144 4 1 1529 337 277 76 51 chr5 123860221 123860339 -28676920 - ID_B1 SINE B4 -23 201 81 1 1529 1040 203 25 10 chr5 123860725 123860929 -28676330 + B3 SINE B2 3 209 -7 1 1529 872 228 54 5 chr5 123860950 123861153 -28676106 + B3 SINE B2 1 213 -3 1 1529 938 267 28 5 chr5 123861246 123861464 -28675795 + ID_B1 SINE B4 1 223 -1 1 1529 1566 53 0 5 chr5 123861656 123861846 -28675413 + B2_Mm2 SINE B2 1 189 -6 1 1529 339 44 0 0 chr5 123862026 123862071 -28675188 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1529 351 200 43 0 chr5 123862071 123862141 -28675118 - PB1D10 SINE Alu -17 100 28 1 1529 299 246 182 45 chr5 123862638 123862770 -28674489 - Charlie8 DNA MER1_type -2163 265 116 1 1529 324 0 0 0 chr5 123862888 123862924 -28674335 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1 191 1198 70 13 0 chr5 123862924 123863081 -28674178 - B2_Mm1a SINE B2 -33 160 2 1 1530 321 292 56 0 chr5 123863119 123863208 -28674051 + RSINE1 SINE B4 54 147 -18 1 1530 423 0 0 0 chr5 123863813 123863860 -28673399 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1530 21 0 0 0 chr5 123864096 123864117 -28673142 + AT_rich Low_complexity Low_complexity 1 21 0 1 1530 566 276 16 8 chr5 123864126 123864254 -28673005 - B1F SINE Alu -11 138 10 1 1530 453 221 159 0 chr5 123864308 123864421 -28672838 + RSINE1 SINE B4 17 147 -18 1 1530 26 30 0 0 chr5 123864481 123864514 -28672745 + AT_rich Low_complexity Low_complexity 1 33 0 1 1530 646 60 30 0 chr5 123864543 123864643 -28672616 - L1Md_F3 LINE L1 -2 6582 6480 1 1530 637 221 92 0 chr5 123864938 123865069 -28672190 - ID_B1 SINE B4 0 224 82 1 1530 306 239 56 0 chr5 123865829 123865900 -28671359 - tRNA-Ala-GCG tRNA tRNA 0 75 1 1 1530 379 231 45 90 chr5 123865933 123866066 -28671193 + MT2B LTR ERVL 152 278 -323 1 1530 870 154 7 7 chr5 123865957 123866094 -28671165 + B1_Mur1 SINE Alu 13 149 0 1 1530 277 267 13 26 chr5 123868016 123868093 -28669166 + B1F1 SINE Alu 3 78 -71 1 1530 776 144 104 22 chr5 123868122 123868257 -28669002 + B1_Mus1 SINE Alu 2 147 -1 1 1530 671 283 0 7 chr5 123868277 123868416 -28668843 + ID_B1 SINE B4 79 216 -8 1 1530 1996 132 60 63 chr5 123868544 123868582 -28668677 - ORR1C2 LTR MaLR 0 384 351 1 1530 1387 45 5 49 chr5 123868582 123868767 -28668492 + B2_Mm2 SINE B2 1 177 -18 1 1530 1996 133 63 64 chr5 123868767 123869121 -28668138 - ORR1C2 LTR MaLR -34 350 6 1 1530 1261 179 13 5 chr5 123869150 123869374 -28667885 + URR1A DNA MER1_type 1 226 0 1 1530 286 250 28 56 chr5 123869385 123869457 -28667802 + RSINE1 SINE B4 74 143 -22 1 1530 226 0 59 0 chr5 123869573 123869607 -28667652 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1530 1284 34 0 0 chr5 123869653 123869800 -28667459 - B1_Mus2 SINE Alu 0 147 1 1 1530 198 150 0 0 chr5 123869878 123869918 -28667341 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1530 515 69 461 10 chr5 123869919 123870021 -28667238 - B1_Mus1 SINE Alu 0 148 1 1 1530 727 21 75 0 chr5 123870024 123870118 -28667141 - B2_Mm2 SINE B2 0 195 95 1 1530 27 49 0 0 chr5 123870126 123870167 -28667092 + AT_rich Low_complexity Low_complexity 1 41 0 1 1530 496 252 32 32 chr5 123870183 123870306 -28666953 - RSINE1 SINE B4 0 165 43 1 1530 972 250 32 5 chr5 123870341 123870558 -28666701 - B4A SINE B4 -69 223 1 1 1530 357 24 0 0 chr5 123871005 123871047 -28666212 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1530 216 0 0 0 chr5 123871047 123871070 -28666189 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1530 326 78 78 0 chr5 123871176 123871227 -28666032 - ORR1A4 LTR MaLR 0 394 340 1 1530 758 42 0 0 chr5 123871227 123871323 -28665936 - B1_Mus2 SINE Alu 0 147 52 1 1530 429 112 212 0 chr5 123871326 123871406 -28665853 - ORR1A4 LTR MaLR -45 284 188 1 1530 352 282 62 101 chr5 123872290 123872351 -28664908 + B4 SINE B4 28 223 -64 1 1530 530 239 84 63 chr5 123872351 123872494 -28664765 + B1F2 SINE Alu 1 146 -3 1 1530 640 256 74 23 chr5 123872513 123872524 -28664735 + B4A SINE B4 14 23 -269 1 1530 1572 42 0 25 chr5 123872524 123872721 -28664538 - B2_Mm1a SINE B2 0 193 2 1 1530 640 256 74 23 chr5 123872721 123872885 -28664374 + B4A SINE B4 24 198 -94 1 1530 384 260 48 0 chr5 123873189 123873293 -28663966 - PB1D10 SINE Alu -8 109 1 1 1530 306 0 0 0 chr5 123873491 123873525 -28663734 + (TGG)n Simple_repeat Simple_repeat 2 35 0 1 1530 207 0 0 0 chr5 123873525 123873548 -28663711 + (CTG)n Simple_repeat Simple_repeat 2 24 0 1 1530 639 0 0 0 chr5 123873546 123873617 -28663642 + (TTC)n Simple_repeat Simple_repeat 3 73 0 1 1530 895 34 16 58 chr5 123873620 123873808 -28663451 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1 1530 458 278 113 0 chr5 123873815 123873930 -28663329 - B1F2 SINE Alu -21 128 1 1 1530 247 309 75 54 chr5 123873930 123873986 -28663273 - MT2B LTR ERVL -435 166 108 1 1530 819 258 109 93 chr5 123874201 123874415 -28662844 - MT2B LTR ERVL 0 601 383 1 1530 1173 37 0 0 chr5 123874415 123874549 -28662710 + B1_Mus2 SINE Alu 2 135 -12 1 1530 210 37 0 0 chr5 123874552 123874579 -28662680 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1530 819 258 109 93 chr5 123874579 123874681 -28662578 - MT2B LTR ERVL -219 382 279 1 1530 1399 40 0 11 chr5 123874737 123874912 -28662347 + B2_Mm2 SINE B2 2 174 -21 1 1530 242 0 61 0 chr5 123874914 123874947 -28662312 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1530 607 27 0 0 chr5 123874948 123875021 -28662238 - B1_Mus2 SINE Alu -11 136 64 1 1530 634 114 0 0 chr5 123875061 123875149 -28662110 - MT2B LTR ERVL -445 88 1 1 1530 721 124 16 0 chr5 123875886 123876015 -28661244 + (TC)n Simple_repeat Simple_repeat 2 132 0 1 1530 372 306 53 53 chr5 123876081 123876233 -28661026 - B4A SINE B4 -140 152 1 1 1530 384 127 0 0 chr5 123876390 123876445 -28660814 - ORR1C1 LTR MaLR 0 384 330 1 1530 869 217 5 42 chr5 123876462 123876475 -28660784 - B3A SINE B2 -7 191 181 1 1530 1043 91 21 0 chr5 123876475 123876618 -28660641 - B1_Mus1 SINE Alu 0 148 3 1 1530 869 217 5 42 chr5 123876618 123876796 -28660463 - B3A SINE B2 -18 180 7 1 1530 1699 165 67 40 chr5 123876805 123876966 -28660293 - ORR1C1 LTR MaLR -41 337 177 1 1530 195 42 0 0 chr5 123876966 123876990 -28660269 + (GA)n Simple_repeat Simple_repeat 2 25 0 1 1530 1699 165 67 40 chr5 123876990 123877156 -28660103 - ORR1C1 LTR MaLR -202 176 2 1 1530 360 281 17 9 chr5 123877264 123877379 -28659880 + PB1D7 SINE Alu 5 120 0 1 1530 856 172 0 27 chr5 123877466 123877615 -28659644 + B1F2 SINE Alu 5 149 0 1 1530 477 268 116 16 chr5 123877845 123877974 -28659285 + ID_B1 SINE B4 70 211 -13 1 1530 198 0 0 0 chr5 123877974 123877996 -28659263 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 1 1530 21 57 0 0 chr5 123878068 123878103 -28659156 + AT_rich Low_complexity Low_complexity 1 35 0 1 1530 332 288 232 23 chr5 123878117 123878337 -28658922 + L1ME4a LINE L1 5636 5901 -223 1 1530 357 236 56 0 chr5 123878368 123878457 -28658802 + B1F1 SINE Alu 56 149 0 1 1530 1474 58 21 0 chr5 123878460 123878648 -28658611 + B2_Mm2 SINE B2 2 193 -2 1 1530 322 325 43 37 chr5 123878826 123878989 -28658270 - MER77 LTR ERVL 0 607 444 1 1530 305 338 103 7 chr5 123879115 123879261 -28657998 - MER77 LTR ERVL -369 238 79 1 1530 453 129 32 0 chr5 123879264 123879357 -28657902 + C-rich Low_complexity Low_complexity 3 98 0 1 1530 582 308 53 62 chr5 123879365 123879377 -28657882 - ID_B1 SINE B4 -1 223 212 1 1530 672 24 0 0 chr5 123879377 123879459 -28657800 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 1 1530 582 308 53 62 chr5 123879459 123879567 -28657692 - ID_B1 SINE B4 -13 211 2 1 1530 705 67 48 0 chr5 123879567 123879671 -28657588 - BC1_Mm scRNA scRNA -43 109 1 1 1530 946 123 27 0 chr5 123879811 123879957 -28657302 + B1_Mur4 SINE Alu 1 150 0 1 1530 577 248 25 25 chr5 123880001 123880158 -28657101 + RSINE1 SINE B4 3 159 -6 1 1530 249 57 0 0 chr5 123880206 123880241 -28657018 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1 1530 788 169 28 7 chr5 123880268 123880411 -28656848 + B1_Mus1 SINE Alu 2 147 -1 1 1530 1170 55 0 40 chr5 123880565 123880717 -28656542 + B1_Mus2 SINE Alu 2 147 0 1 1530 183 80 0 0 chr5 123880953 123880978 -28656281 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1530 426 221 23 0 chr5 123881489 123881575 -28655684 - PB1D9 SINE Alu 0 120 33 1 1530 418 182 117 0 chr5 123882636 123882713 -28654546 + B3A SINE B2 5 90 -108 1 1530 236 324 73 98 chr5 123882713 123882738 -28654521 + RSINE1 SINE B4 6 112 -53 1 1530 474 18 0 0 chr5 123882738 123882793 -28654466 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1530 236 324 73 98 chr5 123882793 123882854 -28654405 + RSINE1 SINE B4 113 165 0 1 1530 217 231 0 0 chr5 123883005 123883044 -28654215 + ID SINE ID 50 88 -136 1 1530 531 170 21 0 chr5 123883680 123883774 -28653485 - B2_Mm2 SINE B2 -96 99 4 1 1530 922 98 8 8 chr5 123883958 123884091 -28653168 + ORR1B2 LTR MaLR 235 367 0 1 1530 290 251 52 19 chr5 123884098 123884259 -28653000 + L1MB4 LINE L1 6012 6182 -1 1 1530 265 294 35 12 chr5 123884815 123884901 -28652358 - LTR79 LTR ERVL -56 471 384 1 1530 225 342 0 0 chr5 123887992 123888065 -28649194 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1530 945 236 19 19 chr5 123888439 123888646 -28648613 - B3 SINE B2 -1 215 9 1 1530 640 194 137 0 chr5 123889123 123889247 -28648012 + B3A SINE B2 5 145 -53 1 1530 584 119 8 0 chr5 123889250 123889368 -28647891 + (TC)n Simple_repeat Simple_repeat 2 120 0 1 1530 396 0 0 0 chr5 123889368 123889412 -28647847 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1530 420 202 54 33 chr5 123889666 123889758 -28647501 - B1_Mus2 SINE Alu -52 95 2 1 1530 337 200 67 95 chr5 123889669 123889774 -28647485 - MT2B2 LTR ERVL -332 252 151 1 1530 1083 242 9 0 chr5 123891326 123891545 -28645714 + ID_B1 SINE B4 4 224 0 1 1530 287 267 40 0 chr5 123891622 123891717 -28645542 - ID4 SINE ID -42 110 7 1 1530 26 30 0 0 chr5 123891727 123891760 -28645499 + AT_rich Low_complexity Low_complexity 1 33 0 1 1530 399 73 0 0 chr5 123891762 123891817 -28645442 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1530 674 237 38 0 chr5 123891817 123891948 -28645311 - RSINE1 SINE B4 -25 140 5 1 1530 1457 62 5 40 chr5 123896307 123896507 -28640752 + B2_Mm2 SINE B2 3 195 0 1 1530 496 302 36 7 chr5 123896517 123896657 -28640602 + B1F SINE Alu 3 146 -3 1 1530 768 264 40 0 chr5 123896671 123896819 -28640440 + RSINE1 SINE B4 8 161 -4 1 1530 255 297 125 77 chr5 123896819 123896839 -28640420 + B3A SINE B2 7 182 -16 1 1530 22 70 0 0 chr5 123896875 123896918 -28640341 + AT_rich Low_complexity Low_complexity 1 43 0 1 1530 1314 120 5 0 chr5 123897847 123898038 -28639221 + B2_Mm1t SINE B2 2 193 0 1 1530 523 197 0 21 chr5 123900936 123901076 -28636183 + CT-rich Low_complexity Low_complexity 1 137 0 1 1530 597 306 62 1 chr5 123901077 123901269 -28635990 - B3A SINE B2 0 216 14 1 1530 467 194 66 28 chr5 123901279 123901385 -28635874 - PB1 SINE Alu 0 127 18 1 1530 187 241 60 48 chr5 123902862 123902945 -28634314 - MIR SINE MIR -1 261 178 1 1530 1211 75 0 0 chr5 123902995 123903142 -28634117 + B1_Mus2 SINE Alu 1 147 0 1 1530 180 0 0 0 chr5 123905570 123905590 -28631669 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 1530 399 21 0 0 chr5 123905591 123905639 -28631620 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1530 194 283 103 34 chr5 123909482 123909599 -28627660 + L2a LINE L2 3271 3395 -31 1 1530 370 223 113 9 chr5 123909810 123909959 -28627300 + B3 SINE B2 2 213 -3 1 1530 802 205 94 0 chr5 123909959 123910130 -28627129 - B3 SINE B2 -2 214 28 1 1530 246 32 0 0 chr5 123910205 123910236 -28627023 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1530 795 67 19 17 chr5 123910236 123910366 -28626893 - B1_Mm SINE Alu -3 144 19 1 1530 304 203 58 0 chr5 123910392 123910461 -28626798 - ID4 SINE ID -9 74 2 1 1530 304 306 128 8 chr5 123910468 123910516 -28626743 - B1F SINE Alu -9 140 89 1 1530 1258 101 32 0 chr5 123910516 123910704 -28626555 - B2_Mm2 SINE B2 0 195 2 1 1530 304 306 128 8 chr5 123910704 123910780 -28626479 - B1F SINE Alu -61 88 3 1 1530 29 28 0 0 chr5 123910829 123910865 -28626394 + AT_rich Low_complexity Low_complexity 1 36 0 1 1530 665 230 63 21 chr5 123910910 123911052 -28626207 - B1_Mur2 SINE Alu 0 149 2 1 1530 526 241 9 0 chr5 123911278 123911386 -28625873 + B1_Mur1 SINE Alu 40 148 -1 1 1530 1060 117 0 16 chr5 123911873 123912056 -28625203 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1530 318 106 0 0 chr5 123912056 123912103 -28625156 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1530 229 208 0 0 chr5 123912463 123912516 -28624743 + T-rich Low_complexity Low_complexity 1 53 0 1 1530 195 294 101 45 chr5 123912898 123912987 -28624272 + L2 LINE L2 2835 2928 -491 1 1530 209 260 104 0 chr5 123912994 123913071 -28624188 + MIR SINE MIR 89 173 -89 1 1530 339 252 90 36 chr5 123913084 123913195 -28624064 - PB1D10 SINE Alu 0 117 1 1 1530 1090 43 0 55 chr5 123913336 123913482 -28623777 - B1_Mus2 SINE Alu -7 140 3 1 1530 329 320 35 111 chr5 123913687 123913713 -28623546 + B4A SINE B4 62 74 -218 1 1530 803 177 6 70 chr5 123913713 123913871 -28623388 + B1_Mur1 SINE Alu 2 149 0 1 1530 368 171 14 14 chr5 123914333 123914404 -28622855 - MIR SINE MIR -92 170 100 1 1530 394 200 27 0 chr5 123914464 123914539 -28622720 + PB1D9 SINE Alu 38 114 -6 1 1530 271 98 0 150 chr5 123914491 123914551 -28622708 + ID_B1 SINE B4 174 224 0 1 1530 267 243 14 0 chr5 123914836 123914906 -28622353 + L1MB5 LINE L1 6087 6157 -17 1 1530 347 157 0 19 chr5 123914922 123915026 -28622233 + T-rich Low_complexity Low_complexity 1 102 0 1 1530 807 178 15 15 chr5 123915028 123915165 -28622094 - B1_Mur3 SINE Alu 0 149 13 1 1530 1214 47 14 0 chr5 123915240 123915388 -28621871 + B1_Mur4 SINE Alu 1 150 0 1 1530 218 56 28 0 chr5 123915388 123915424 -28621835 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 1 1530 301 217 0 127 chr5 123915430 123915509 -28621750 + PB1D10 SINE Alu 48 116 -1 1 1530 869 236 39 10 chr5 123915518 123915748 -28621511 + L1MB5 LINE L1 4486 4697 -1449 1 1530 315 0 0 0 chr5 123915785 123915820 -28621439 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1530 1142 56 7 7 chr5 123915821 123915965 -28621294 - B1_Mm SINE Alu -3 144 1 1 1530 239 267 0 72 chr5 123916025 123916132 -28621127 + ID4 SINE ID 2 100 -52 1 1530 241 180 97 16 chr5 123916224 123916286 -28620973 + B4A SINE B4 25 91 -201 1 1530 943 191 124 0 chr5 123916292 123916470 -28620789 + B3 SINE B2 7 206 -10 1 1530 482 0 0 17 chr5 123916933 123916992 -28620267 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 1 1530 4588 72 24 3 chr5 123916998 123917573 -28619686 + LTRIS_Mus LTR ERV1 1 587 0 1 1530 533 309 77 17 chr5 123917819 123918116 -28619143 + L1MB5 LINE L1 5697 6020 -154 1 1530 1059 274 21 121 chr5 123918164 123918237 -28619022 + MTE2a LTR MaLR 1 52 -327 1 1530 1147 38 0 0 chr5 123918237 123918369 -28618890 - B1_Mm SINE Alu -14 133 2 1 1530 1059 274 21 121 chr5 123918369 123918668 -28618591 + MTE2a LTR MaLR 53 336 -43 1 1530 467 217 161 32 chr5 123918667 123918791 -28618468 - B1F1 SINE Alu -1 148 9 1 1530 546 218 144 8 chr5 123919402 123919527 -28617732 + B1F SINE Alu 1 142 -7 1 1530 681 293 0 30 chr5 123919539 123919708 -28617551 + RSINE1 SINE B4 2 165 0 1 1530 24 0 0 0 chr5 123919726 123919750 -28617509 + AT_rich Low_complexity Low_complexity 1 24 0 1 1530 402 267 16 49 chr5 123919914 123920036 -28617223 - ID_B1 SINE B4 -21 203 86 1 1530 268 294 70 12 chr5 123920039 123920125 -28617134 + PB1D7 SINE Alu 2 92 -28 1 1530 183 103 16 79 chr5 123920125 123920188 -28617071 + T-rich Low_complexity Low_complexity 2 60 0 1 1530 1165 75 0 14 chr5 123920190 123920338 -28616921 - B1_Mus1 SINE Alu -1 147 2 1 1530 673 344 45 4 chr5 123920492 123920734 -28616525 + LTR16B2 LTR ERVL 1 252 -210 1 1530 364 277 98 0 chr5 123920769 123920881 -28616378 + ID_B1 SINE B4 102 224 0 1 1530 245 301 55 31 chr5 123920924 123921051 -28616208 + LTR16B2 LTR ERVL 283 412 -50 1 1530 255 316 13 0 chr5 123921440 123921516 -28615743 + CT-rich Low_complexity Low_complexity 5 81 0 1 1530 819 212 17 40 chr5 123921608 123921785 -28615474 + B3 SINE B2 1 173 -43 1 1530 241 47 23 23 chr5 123921794 123921838 -28615421 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 1 1530 495 245 0 0 chr5 123921873 123921967 -28615292 + PB1 SINE Alu 8 101 -26 1 1530 693 286 33 19 chr5 123922236 123922507 -28614752 + L1MB7 LINE L1 5824 6098 -86 1 1530 249 33 0 0 chr5 123922775 123922805 -28614454 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 1 1530 485 269 0 52 chr5 123922809 123922962 -28614297 + B1F2 SINE Alu 1 145 -4 1 1530 200 178 43 22 chr5 123922998 123923041 -28614218 + (TATAG)n Simple_repeat Simple_repeat 1 43 0 1 1530 1998 200 11 19 chr5 123923041 123923418 -28613841 - ORR1D1 LTR MaLR 0 374 1 1 1530 200 178 43 22 chr5 123923418 123923466 -28613793 + (TATAG)n Simple_repeat Simple_repeat 5 55 0 1 1530 600 206 0 0 chr5 123923490 123923636 -28613623 + (TATAG)n Simple_repeat Simple_repeat 5 150 0 1 1530 544 294 58 86 chr5 123923638 123923951 -28613308 + ORR1E LTR MaLR 4 307 -52 1 1530 411 298 99 7 chr5 123923957 123924099 -28613160 - RMER5 LTR ERV1 -20 514 360 1 1530 584 316 45 6 chr5 123924099 123924255 -28613004 + RSINE1 SINE B4 2 163 -2 1 1530 1261 41 0 0 chr5 123924294 123924440 -28612819 + B1_Mus1 SINE Alu 2 147 -1 1 1530 276 192 0 103 chr5 123924528 123924586 -28612673 - ORR1D1 LTR MaLR 0 384 333 1 1530 345 103 2 0 chr5 123924594 123924651 -28612608 - Lx3C LINE L1 -554 6419 6362 1 1530 1945 132 25 9 chr5 123924657 123924977 -28612282 - L1_Mur1 LINE L1 -22 5864 5540 1 1530 1539 186 85 11 chr5 123924972 123925325 -28611934 + Lx3C LINE L1 6598 6976 0 1 1530 1227 209 117 25 chr5 123925342 123925666 -28611593 - ORR1D1 LTR MaLR -18 356 3 1 1530 720 204 185 10 chr5 123925738 123925927 -28611332 - B3 SINE B2 -5 211 10 1 1530 384 269 107 57 chr5 123925942 123926119 -28611140 - HAL1-3A_ME LINE L1 -697 2161 1976 1 1530 411 214 0 0 chr5 123926134 123926260 -28610999 + (TG)n Simple_repeat Simple_repeat 1 126 0 1 1530 235 0 57 0 chr5 123926263 123926298 -28610961 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1530 385 319 20 34 chr5 123926299 123926445 -28610814 - Lx8 LINE L1 -146 7327 7184 1 1530 1145 80 0 0 chr5 123927017 123927154 -28610105 + B1_Mus2 SINE Alu 2 138 -9 1 1530 232 48 0 45 chr5 123927154 123927198 -28610061 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 1 1530 337 317 9 19 chr5 123927269 123927375 -28609884 + PB1D10 SINE Alu 13 117 0 1 1530 255 328 0 0 chr5 123927532 123927590 -28609669 - RSINE1 SINE B4 0 165 108 1 1530 305 267 0 0 chr5 123927663 123927723 -28609536 + RSINE1 SINE B4 87 146 -19 1 1530 296 228 0 17 chr5 123927867 123927925 -28609334 + Charlie5 DNA MER1_type 33 89 -2535 1 1530 270 265 38 75 chr5 123928000 123928106 -28609153 + PB1D9 SINE Alu 14 115 -5 1 1530 535 228 0 34 chr5 123928108 123928226 -28609033 + B1F2 SINE Alu 1 114 -35 1 1530 256 290 7 108 chr5 123928226 123928238 -28609021 + MT2B LTR ERVL 202 280 -321 1 1530 385 243 14 0 chr5 123928546 123928690 -28608569 + (TA)n Simple_repeat Simple_repeat 1 146 0 1 1530 207 162 0 0 chr5 123928703 123928740 -28608519 + (CATA)n Simple_repeat Simple_repeat 4 40 0 1 1530 1410 73 15 35 chr5 123928756 123928955 -28608304 - B2_Mm2 SINE B2 0 195 1 1 1530 257 232 18 0 chr5 123929067 123929123 -28608136 - LTR37B LTR ERV1 -405 63 7 1 1530 250 278 82 14 chr5 123929470 123929543 -28607716 + ID4 SINE ID 5 82 -1 1 1530 237 298 79 69 chr5 123929543 123929571 -28607688 + ID_B1 SINE B4 5 106 -118 1 1530 242 352 36 36 chr5 123929896 123930008 -28607251 + MIR SINE MIR 50 161 -101 1 1530 206 269 0 37 chr5 123930881 123930935 -28606324 - L4 LINE RTE -1599 430 379 1 1530 249 216 20 0 chr5 123932312 123932363 -28604896 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1530 398 289 26 0 chr5 123932745 123932859 -28604400 + PB1D10 SINE Alu 1 117 0 1 1530 965 231 33 28 chr5 123932989 123933203 -28604056 + B3 SINE B2 2 216 0 1 1530 492 227 48 34 chr5 123933212 123933358 -28603901 + B1F SINE Alu 1 148 -1 1 1530 1088 44 59 0 chr5 123933495 123933630 -28603629 + B1_Mus1 SINE Alu 1 143 -5 1 1530 181 75 50 0 chr5 123933664 123933704 -28603555 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1 1530 260 183 183 0 chr5 123933706 123933771 -28603488 - B3A SINE B2 -11 187 110 1 1530 572 114 0 0 chr5 123933771 123933859 -28603400 + RMER19B LTR ERVK 1 88 -814 1 1530 216 340 40 33 chr5 123933936 123934088 -28603171 - L2a LINE L2 -18 3408 3256 1 1530 524 296 49 0 chr5 123934154 123934296 -28602963 + B1F SINE Alu 1 149 0 1 1530 504 331 87 38 chr5 123934414 123934781 -28602478 - L2a LINE L2 -407 3012 2628 1 1530 396 0 0 0 chr5 123935109 123935153 -28602106 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1530 477 198 119 0 chr5 123935439 123935540 -28601719 - PB1D10 SINE Alu -3 114 2 1 1530 192 152 0 0 chr5 123935645 123935678 -28601581 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 1 1530 1423 58 15 36 chr5 123935833 123936029 -28601230 + B2_Mm2 SINE B2 4 195 0 1 1530 1245 35 0 0 chr5 123936031 123936172 -28601087 + B1_Mus1 SINE Alu 1 141 -7 1 1530 35 0 0 0 chr5 123936191 123936226 -28601033 + AT_rich Low_complexity Low_complexity 1 35 0 1 1530 195 100 0 0 chr5 123936233 123936263 -28600996 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1530 1238 114 5 5 chr5 123936511 123936552 -28600707 - B2_Mm2 SINE B2 -8 187 147 1 1530 315 0 0 0 chr5 123936552 123936587 -28600672 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1530 1238 114 5 5 chr5 123936587 123936730 -28600529 - B2_Mm2 SINE B2 -49 146 4 1 1530 639 239 49 14 chr5 123936770 123936914 -28600345 + B1_Mur1 SINE Alu 1 149 0 1 1530 923 55 146 15 chr5 123937537 123937667 -28599592 + B1_Mm SINE Alu 1 147 0 1 1530 204 222 0 0 chr5 123937667 123937703 -28599556 + polypurine Low_complexity Low_complexity 3 38 0 1 1530 551 264 148 27 chr5 123938185 123938368 -28598891 + B3 SINE B2 1 205 -11 1 1530 425 241 77 42 chr5 123938416 123938559 -28598700 + B1F2 SINE Alu 1 148 -1 1 1530 935 128 0 35 chr5 123938663 123938808 -28598451 - B1_Mus1 SINE Alu -1 147 8 1 1530 505 263 41 101 chr5 123938808 123938831 -28598428 - B4 SINE B4 -67 224 67 1 1530 225 0 0 0 chr5 123938894 123938919 -28598340 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1530 252 0 0 0 chr5 123939490 123939518 -28597741 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 1 1530 188 200 0 0 chr5 123940439 123940474 -28596785 - MIRb SINE MIR -20 248 214 1 1530 412 264 169 31 chr5 123940640 123940824 -28596435 - B3A SINE B2 0 216 15 1 1530 615 14 0 0 chr5 123940892 123940964 -28596295 + (TTTC)n Simple_repeat Simple_repeat 3 74 0 1 1530 1079 105 49 0 chr5 123940967 123941129 -28596130 - B2_Mm1t SINE B2 -22 171 2 1 1530 233 222 222 0 chr5 123941178 123941241 -28596018 + PB1D10 SINE Alu 35 111 -6 1 1530 758 280 5 41 chr5 123941253 123941473 -28595786 + ID_B1 SINE B4 4 215 -9 1 1530 570 308 0 59 chr5 123941487 123941605 -28595654 + RSINE1 SINE B4 7 121 -44 1 1530 1801 181 154 126 chr5 123941605 123942123 -28595136 + MT2A LTR ERVL 1 533 0 1 1530 570 308 0 59 chr5 123942123 123942173 -28595086 + RSINE1 SINE B4 122 165 0 1 1530 258 32 0 0 chr5 123942576 123942607 -28594652 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1530 665 222 272 43 chr5 123943819 123944120 -28593139 + ORR1D2 LTR MaLR 1 370 0 1 1530 502 284 113 58 chr5 123944433 123944848 -28592411 + L1MB5 LINE L1 5586 6023 -151 1 1530 414 147 0 40 chr5 123944858 123944957 -28592302 + CT-rich Low_complexity Low_complexity 2 96 0 1 1530 764 238 162 85 chr5 123945065 123945244 -28592015 + B4 SINE B4 1 215 -77 1 1530 233 29 0 29 chr5 123945244 123945279 -28591980 + (CAAAA)n Simple_repeat Simple_repeat 5 38 0 1 1530 764 238 162 85 chr5 123945279 123945370 -28591889 + B4 SINE B4 216 292 0 1 1530 279 212 0 0 chr5 123945371 123945451 -28591808 + (CA)n Simple_repeat Simple_repeat 2 81 0 1 1530 1151 68 0 0 chr5 123945690 123945836 -28591423 + B1_Mus1 SINE Alu 1 146 -2 1 1530 183 100 0 0 chr5 123945881 123945911 -28591348 + (CACCC)n Simple_repeat Simple_repeat 2 31 0 1 1530 328 303 90 0 chr5 123945964 123946086 -28591173 - B1F SINE Alu -12 137 5 1 1530 29 0 0 0 chr5 123946102 123946131 -28591128 + AT_rich Low_complexity Low_complexity 1 29 0 1 1530 357 24 0 0 chr5 123946131 123946173 -28591086 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1530 452 244 34 25 chr5 123946180 123946298 -28590961 - RSINE1 SINE B4 -18 147 29 1 1530 190 29 28 56 chr5 123946322 123946358 -28590901 + (CACCC)n Simple_repeat Simple_repeat 2 36 0 1 1530 840 128 0 0 chr5 123946391 123946524 -28590735 + (TTCC)n Simple_repeat Simple_repeat 3 135 0 1 1530 663 271 42 19 chr5 123946527 123946741 -28590518 - ID_B1 SINE B4 -5 219 1 1 1530 365 324 14 56 chr5 123947313 123947457 -28589802 - MER20 DNA MER1_type -79 140 3 1 1530 1118 63 0 27 chr5 123947586 123947724 -28589535 + B1_Mus2 SINE Alu 2 138 -9 1 1530 297 51 0 0 chr5 123947724 123947763 -28589496 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1530 308 220 0 0 chr5 123947949 123948008 -28589251 - ID_B1 SINE B4 -3 221 163 1 1530 940 196 76 71 chr5 123948795 123949020 -28588239 - URR1A DNA MER1_type 0 226 1 1 1530 294 95 0 0 chr5 123949023 123949065 -28588194 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1530 314 26 0 0 chr5 123951638 123951676 -28585583 - B1_Mus2 SINE Alu -109 38 1 1 1530 316 307 30 30 chr5 123951700 123951831 -28585428 - MurSatRep1 Unknown Unknown -1854 283 153 1 1530 1316 103 0 35 chr5 123951850 123952028 -28585231 + B2_Mm2 SINE B2 1 172 -23 1 1530 243 0 0 0 chr5 123952028 123952055 -28585204 + (GAA)n Simple_repeat Simple_repeat 2 28 0 1 1530 1316 103 0 35 chr5 123952055 123952077 -28585182 + B2_Mm2 SINE B2 173 194 -1 1 1530 201 74 0 0 chr5 123952082 123952109 -28585150 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 1 1530 915 280 82 141 chr5 123952367 123953111 -28584148 - RMER13A LTR ERVK -159 701 2 1 1530 441 0 0 0 chr5 123954606 123954655 -28582604 + (TTCCC)n Simple_repeat Simple_repeat 4 52 0 1 1530 239 175 18 0 chr5 123954655 123954712 -28582547 + CT-rich Low_complexity Low_complexity 1 58 0 1 1530 262 275 5 23 chr5 123954713 123954786 -28582473 - PB1D10 SINE Alu -31 89 19 1 1530 417 138 49 24 chr5 123954788 123954870 -28582389 - B1_Mur1 SINE Alu -2 147 64 1 1530 343 188 265 0 chr5 123954941 123954959 -28582300 + B1F2 SINE Alu 1 148 -1 1 1530 524 182 61 0 chr5 123954959 123955058 -28582201 + ID_B1 SINE B4 118 222 -2 1 1530 530 228 15 73 chr5 123955131 123955268 -28581991 + B4 SINE B4 107 235 -57 1 1530 1187 91 6 0 chr5 123955600 123955775 -28581484 + (TTC)n Simple_repeat Simple_repeat 1 176 0 1 1530 1253 50 6 17 chr5 123955794 123955975 -28581284 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1 1530 958 148 11 0 chr5 123955975 123956151 -28581108 + CT-rich Low_complexity Low_complexity 2 179 0 1 1530 984 82 37 0 chr5 123956151 123956285 -28580974 - B1_Mus1 SINE Alu 0 148 10 1 1530 539 252 92 39 chr5 123956313 123956466 -28580793 - RSINE1 SINE B4 -1 164 4 1 1530 664 259 67 0 chr5 123956471 123956606 -28580653 - ID_B1 SINE B4 -2 222 79 1 1530 1145 82 7 7 chr5 123956635 123956782 -28580477 + B1_Mus2 SINE Alu 1 147 0 1 1530 245 29 29 0 chr5 123956791 123956825 -28580434 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1 1530 420 161 161 0 chr5 123956831 123956924 -28580335 + B1F1 SINE Alu 35 142 -7 1 1530 288 0 0 0 chr5 123956939 123956971 -28580288 + (GAAAA)n Simple_repeat Simple_repeat 1 32 0 1 1530 241 226 79 16 chr5 123957068 123957131 -28580128 - RSINE1 SINE B4 0 165 99 1 1530 2329 138 214 42 chr5 123957238 123957813 -28579446 - Lx4B LINE L1 -120 6938 6265 1 1530 22 0 0 0 chr5 123959479 123959501 -28577758 + AT_rich Low_complexity Low_complexity 1 22 0 1 1530 333 255 261 0 chr5 123959640 123959793 -28577466 + ID_B1 SINE B4 10 202 -22 1 1530 254 253 105 13 chr5 123960373 123960449 -28576810 + B1F SINE Alu 7 89 -60 1 1530 299 240 91 26 chr5 123962899 123962976 -28574283 + B3A SINE B2 86 167 -31 1 1530 368 250 0 62 chr5 123963234 123963329 -28573930 - B4A SINE B4 -199 93 7 1 1530 430 246 127 0 chr5 123963654 123963764 -28573495 - RSINE1 SINE B4 -25 140 17 1 1530 314 207 98 0 chr5 123964145 123964227 -28573032 - RSINE1 SINE B4 -28 137 48 1 1530 417 212 73 89 chr5 123964383 123964507 -28572752 - B4A SINE B4 -58 234 113 1 1530 374 191 295 0 chr5 123964676 123964781 -28572478 - B3A SINE B2 -62 136 1 1 1530 381 291 69 52 chr5 123965071 123965245 -28572014 + B4 SINE B4 57 233 -59 1 1530 519 246 101 7 chr5 123965436 123965575 -28571684 - RSINE1 SINE B4 -10 155 4 1 1530 277 238 31 16 chr5 123965710 123965774 -28571485 - B4 SINE B4 -174 118 54 1 1530 935 159 7 0 chr5 123965825 123965970 -28571289 - B1_Mus1 SINE Alu 0 148 3 1 1530 239 293 24 35 chr5 123966517 123966602 -28570657 + B1F SINE Alu 2 85 -64 1 1530 506 150 105 61 chr5 123966625 123966739 -28570520 + PB1D9 SINE Alu 1 119 -1 1 1530 405 175 7 90 chr5 123966919 123967050 -28570209 - B1F SINE Alu -21 128 16 1 1530 237 359 7 97 chr5 123967303 123967319 -28569940 + MT2B LTR ERVL 150 152 -449 1 1530 641 232 56 42 chr5 123967319 123967463 -28569796 + B1F SINE Alu 2 147 -2 1 1530 913 110 62 0 chr5 123967511 123967657 -28569602 + URR1A DNA MER1_type 72 226 0 1 1530 345 226 32 21 chr5 123968152 123968247 -28569012 + PB1D10 SINE Alu 3 98 -19 1 1530 846 159 80 0 chr5 123968479 123968617 -28568642 - B1_Mur4 SINE Alu 0 150 2 1 1530 33 0 0 0 chr5 123968623 123968656 -28568603 + AT_rich Low_complexity Low_complexity 1 33 0 1 1530 436 112 316 0 chr5 123968688 123968786 -28568473 - B3 SINE B2 -86 130 2 1 1530 853 130 76 58 chr5 123968800 123968972 -28568287 - B2_Mm2 SINE B2 -20 175 1 1 1530 340 253 40 0 chr5 123968981 123969056 -28568203 - B1_Mus2 SINE Alu -15 105 28 1 1530 231 301 70 35 chr5 123968984 123969070 -28568189 - B4 SINE B4 -102 190 102 1 1530 1291 64 116 0 chr5 123969071 123969244 -28568015 - B2_Mm2 SINE B2 -2 193 1 1 1530 264 153 48 48 chr5 123969263 123969325 -28567934 + MT2B LTR ERVL 208 269 -332 1 1530 336 139 216 27 chr5 123969272 123969346 -28567913 + B1_Mur2 SINE Alu 62 149 0 1 1530 302 233 154 11 chr5 123969625 123969653 -28567606 - PB1D7 SINE Alu -10 110 9 1 1530 305 180 66 0 chr5 123969653 123969714 -28567545 - ID_B1 SINE B4 -67 157 93 1 1530 454 98 315 0 chr5 123970451 123970543 -28566716 + B1_Mus2 SINE Alu 26 146 -1 1 1530 878 156 79 53 chr5 123970549 123970739 -28566520 + B2_Mm2 SINE B2 1 195 0 1 1530 741 152 59 7 chr5 123971048 123971200 -28566059 - Lx4A LINE L1 0 7058 6899 1 1530 223 288 175 26 chr5 123971288 123971402 -28565857 - MIRm SINE MIR -122 154 24 1 1530 627 112 0 0 chr5 123971561 123971659 -28565600 + (GGGA)n Simple_repeat Simple_repeat 1 98 0 1 1530 198 0 0 0 chr5 123972033 123972055 -28565204 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 1 1530 280 277 135 25 chr5 123972210 123972373 -28564886 + L2 LINE L2 2809 2989 -430 1 1530 973 136 0 39 chr5 123972509 123972662 -28564597 - B1_Mur4 SINE Alu -1 149 3 1 1530 333 251 62 19 chr5 123972710 123972828 -28564431 - B3A SINE B2 -27 189 65 1 1530 217 140 68 23 chr5 123973536 123973580 -28563679 + B1_Mus2 SINE Alu 25 70 -77 1 1530 239 114 0 22 chr5 123974486 123974531 -28562728 + (CGGGG)n Simple_repeat Simple_repeat 4 47 0 1 1530 706 290 6 6 chr5 123976551 123976687 -28560572 + RSINE1 SINE B4 2 136 -29 1 1530 438 69 0 0 chr5 123976687 123976745 -28560514 + (TATG)n Simple_repeat Simple_repeat 2 59 0 1 1530 706 290 6 6 chr5 123976745 123976771 -28560488 + RSINE1 SINE B4 137 163 -2 1 1530 2714 240 56 30 chr5 123977017 123978490 -28558769 + Lx5 LINE L1 5349 7386 -74 1 1530 273 229 203 7 chr5 123978498 123978592 -28558667 + B1F SINE Alu 39 142 -7 1 1530 245 275 86 21 chr5 123978664 123978757 -28558502 - BC1_Mm scRNA scRNA -53 99 1 1 1530 344 245 59 0 chr5 123978763 123978865 -28558394 - PB1D10 SINE Alu -5 112 5 1 1530 411 205 11 39 chr5 123980752 123980860 -28556399 - B1F SINE Alu -8 141 42 1 1530 682 243 71 6 chr5 123981315 123981485 -28555774 + B3A SINE B2 2 182 -16 1 1530 325 130 0 0 chr5 123981535 123981581 -28555678 + HAL1-3A_ME LINE L1 1977 2022 -836 1 1530 527 274 0 0 chr5 123982331 123982433 -28554826 - PB1D10 SINE Alu -1 116 15 1 1530 430 165 35 12 chr5 123982429 123982515 -28554744 + ID_B1 SINE B4 115 202 -22 1 1530 437 258 159 82 chr5 123983236 123983468 -28553791 + MTE2a LTR MaLR 57 306 -73 1 1530 360 302 38 0 chr5 123983637 123983743 -28553516 + RSINE1 SINE B4 3 112 -53 1 1530 231 282 187 91 chr5 123984440 123984627 -28552632 - MIRb SINE MIR -43 219 15 1 1530 224 146 70 35 chr5 123984893 123984950 -28552309 - PB1D9 SINE Alu -49 71 13 1 1530 985 107 0 51 chr5 123984968 123985125 -28552134 - B1_Mur4 SINE Alu 0 150 2 1 1530 1170 98 30 6 chr5 123985723 123985888 -28551371 - B2_Mm2 SINE B2 -26 169 1 1 1530 624 256 72 104 chr5 123985976 123986109 -28551150 - ID_B1 SINE B4 -8 216 84 1 1530 188 67 33 0 chr5 123986109 123986139 -28551120 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1 1530 624 256 72 104 chr5 123986139 123986227 -28551032 - ID SINE ID -141 83 2 1 1530 408 20 0 0 chr5 123986229 123986278 -28550981 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1530 289 308 0 133 chr5 123986285 123986313 -28550946 + MT2B LTR ERVL 142 149 -452 1 1530 652 233 16 9 chr5 123986313 123986457 -28550802 + B1F2 SINE Alu 3 146 -3 1 1530 1117 50 0 0 chr5 123987076 123987215 -28550044 - B1_Mm SINE Alu 0 147 9 1 1530 334 300 39 20 chr5 123987223 123987325 -28549934 - PB1D7 SINE Alu 0 120 17 1 1530 226 250 0 0 chr5 123987312 123987360 -28549899 - B3A SINE B2 -53 145 98 1 1530 670 195 47 0 chr5 123987476 123987604 -28549655 - B1_Mus2 SINE Alu -13 134 1 1 1530 474 315 0 51 chr5 123987607 123987744 -28549515 - ID_B1 SINE B4 -3 221 92 1 1530 319 256 77 0 chr5 123987793 123987871 -28549388 - PB1D10 SINE Alu -1 116 33 1 1530 1080 23 30 0 chr5 123988015 123988148 -28549111 + B1_Mus2 SINE Alu 11 147 0 1 1530 1225 79 90 6 chr5 123988183 123988339 -28548920 + B2_Mm1a SINE B2 1 158 -35 1 1530 252 0 0 0 chr5 123988339 123988367 -28548892 + (TAA)n Simple_repeat Simple_repeat 3 30 0 1 1530 1225 79 90 6 chr5 123988367 123988388 -28548871 + B2_Mm1a SINE B2 159 193 0 1 1530 1520 54 5 0 chr5 123988513 123988699 -28548560 - B2_Mm1a SINE B2 -6 187 1 1 1530 8520 23 1 7 chr5 123988737 123989701 -28547558 + RLTR13A2 LTR ERVK 1 958 0 1 191 48587 12 1 7 chr5 123989701 123995543 -28541716 + ETnERV3-int LTR ERVK 1 5808 0 1 1531 8615 21 1 0 chr5 123995548 123996505 -28540754 + RLTR13A2 LTR ERVK 1 958 0 1 1531 646 224 102 12 chr5 123996518 123996685 -28540574 - B3A SINE B2 -13 185 4 1 1531 429 308 17 0 chr5 123996709 123996829 -28540430 + ID_B1 SINE B4 97 218 -6 1 1531 320 267 116 0 chr5 123997270 123997356 -28539903 + RSINE1 SINE B4 70 165 0 1 1531 183 264 0 0 chr5 123997372 123997425 -28539834 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 1 1531 213 65 0 0 chr5 123997485 123997516 -28539743 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1531 4506 14 0 0 chr5 123997633 123998126 -28539133 + MT2_Mm LTR ERVL 1 493 0 1 1531 6246 8 0 0 chr5 123998126 123998840 -28538419 + MERVL-int LTR ERVL 1 714 -4771 1 1531 8101 33 0 3 chr5 123998840 124000000 -28537259 + MERVL-int LTR ERVL 748 2045 -3716 1 1531 30956 20 0 0 chr5 124000000 124003416 -28533843 + MERVL-int LTR ERVL 1944 5360 -125 1 1531 403 167 46 35 chr5 124003416 124003503 -28533756 + ORR1A3-int LTR MaLR 553 640 -1323 2 1531 319 0 0 0 chr5 124003503 124003541 -28533718 + MERVL-int LTR ERVL 5448 5485 0 1 1531 4524 12 0 0 chr5 124003541 124004034 -28533225 + MT2_Mm LTR ERVL 1 493 0 1 1531 640 235 0 0 chr5 124004055 124004174 -28533085 + B1_Mur2 SINE Alu 31 149 0 3 1531 601 192 0 70 chr5 124004228 124004357 -28532902 + PB1D9 SINE Alu 1 120 0 4 1531 333 159 0 0 chr5 124004361 124004424 -28532835 + GA-rich Low_complexity Low_complexity 2 64 0 5 1531 459 254 8 26 chr5 124004424 124004541 -28532718 + PB1D10 SINE Alu 1 115 -2 6 1531 288 0 0 0 chr5 124004855 124004887 -28532372 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 1531 321 26 0 0 chr5 124004887 124004924 -28532335 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1531 227 224 20 0 chr5 124005019 124005068 -28532191 + ID_B1 SINE B4 118 167 -57 9 1531 916 116 8 0 chr5 124005223 124005352 -28531907 - B1_Mus1 SINE Alu -12 136 7 1 1531 1287 34 0 0 chr5 124005534 124005681 -28531578 - B1_Mus1 SINE Alu 0 148 2 1 1531 341 253 13 0 chr5 124006097 124006176 -28531083 + ID4 SINE ID 4 83 0 1 1531 1619 22 11 0 chr5 124006203 124006388 -28530871 + B2_Mm1a SINE B2 2 188 -5 1 1531 189 0 0 0 chr5 124006397 124006418 -28530841 + (GAAAA)n Simple_repeat Simple_repeat 3 23 0 1 1531 22 56 0 0 chr5 124006488 124006524 -28530735 + AT_rich Low_complexity Low_complexity 1 36 0 1 1531 264 192 364 0 chr5 124006584 124006683 -28530576 - B3A SINE B2 -80 136 2 1 1531 630 277 323 6 chr5 124006689 124007005 -28530254 + RCHARR1 DNA MER1_type 4 419 -555 1 1531 332 130 0 0 chr5 124006998 124007052 -28530207 + B1_Mur1 SINE Alu 96 149 0 1 1531 617 219 152 51 chr5 124007082 124007279 -28529980 + ID_B1 SINE B4 1 217 -7 1 1531 574 246 126 93 chr5 124007376 124007468 -28529791 + B4 SINE B4 1 87 -205 2 1531 608 234 168 5 chr5 124007468 124007653 -28529606 + B3 SINE B2 2 216 0 2 1531 574 246 126 93 chr5 124007653 124007807 -28529452 + B4 SINE B4 88 255 -37 2 1531 869 94 69 42 chr5 124007813 124007957 -28529302 + B1_Mur4 SINE Alu 2 149 -1 2 1531 240 288 12 88 chr5 124007971 124008051 -28529208 + RSINE1 SINE B4 92 165 0 2 1531 552 112 140 20 chr5 124008103 124008203 -28529056 - PB1D9 SINE Alu -5 115 4 2 1531 992 231 96 50 chr5 124008204 124008527 -28528732 + RCHARR1 DNA MER1_type 564 901 -73 1 1531 1041 215 30 0 chr5 124009266 124009466 -28527793 - B3 SINE B2 -10 206 1 2 1531 261 75 0 0 chr5 124009507 124009547 -28527712 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1531 257 224 75 0 chr5 124009633 124009700 -28527559 + MER58A DNA MER1_type 41 112 -112 2 1531 1310 77 11 21 chr5 124009958 124010145 -28527114 + B2_Mm1t SINE B2 1 185 -8 2 1531 563 184 51 0 chr5 124010156 124010254 -28527005 - RSINE1 SINE B4 -51 114 12 2 1531 249 232 284 0 chr5 124010509 124010604 -28526655 + RSINE1 SINE B4 4 125 -40 3 1531 222 300 113 84 chr5 124012008 124012150 -28525109 + ID_B1 SINE B4 30 175 -49 3 1531 426 239 28 13 chr5 124012056 124012173 -28525086 + PB1D10 SINE Alu 5 120 0 3 1531 796 176 30 59 chr5 124012181 124012350 -28524909 + RSINE1 SINE B4 2 165 0 3 1531 253 220 0 0 chr5 124012383 124012442 -28524817 + Lx8 LINE L1 7413 7471 -2 3 1531 486 96 0 0 chr5 124012547 124012620 -28524639 + (CATA)n Simple_repeat Simple_repeat 2 74 0 3 1531 787 144 8 0 chr5 124012995 124013120 -28524139 + B1_Mus1 SINE Alu 1 126 -22 3 1531 334 232 62 39 chr5 124013160 124013266 -28523993 + B1F SINE Alu 11 141 -8 3 1531 657 257 31 16 chr5 124013967 124014161 -28523098 + B3A SINE B2 2 198 0 3 1531 673 203 134 7 chr5 124014209 124014358 -28522901 - B3A SINE B2 -30 168 1 3 1531 244 189 38 0 chr5 124014358 124014405 -28522854 + MER82 DNA MER2_type 119 167 -486 4 1531 846 182 7 7 chr5 124014414 124014558 -28522701 + B1_Mm SINE Alu 1 144 -3 4 1531 296 311 29 10 chr5 124014630 124014734 -28522525 + MER82 DNA MER2_type 333 438 -215 4 1531 692 215 37 0 chr5 124015293 124015428 -28521831 + B1_Mur1 SINE Alu 10 149 0 4 1531 970 133 21 0 chr5 124015829 124015972 -28521287 - B1_Mus2 SINE Alu 0 147 2 4 1531 285 243 114 0 chr5 124015997 124016067 -28521192 - ID4 SINE ID -2 81 4 4 1531 1046 105 14 0 chr5 124016582 124016725 -28520534 - B1_Mus2 SINE Alu -2 145 1 4 1531 548 264 104 0 chr5 124016945 124017070 -28520189 - B1_Mur2 SINE Alu -10 139 2 4 1531 243 253 147 0 chr5 124017127 124017222 -28520037 - PB1 SINE Alu 0 127 19 4 1531 843 180 128 6 chr5 124017255 124017434 -28519825 + B3 SINE B2 5 205 -11 4 1531 262 190 17 17 chr5 124017466 124017525 -28519734 + B3 SINE B2 150 208 -8 4 1531 183 114 0 0 chr5 124017562 124017597 -28519662 + (A)n Simple_repeat Simple_repeat 1 35 0 5 1531 399 252 53 18 chr5 124017678 124017791 -28519468 + PB1D10 SINE Alu 1 117 0 5 1531 189 0 0 0 chr5 124017846 124017867 -28519392 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1531 227 341 66 0 chr5 124017881 124017972 -28519287 + PB1D7 SINE Alu 18 114 -6 5 1531 825 159 0 0 chr5 124018061 124018224 -28519035 + (CA)n Simple_repeat Simple_repeat 1 163 0 5 1531 244 256 11 95 chr5 124018224 124018319 -28518940 + B4 SINE B4 86 172 -120 5 1531 387 134 30 0 chr5 124019322 124019389 -28517870 + PB1D9 SINE Alu 31 99 -21 5 1531 633 204 147 6 chr5 124019743 124019920 -28517339 + B3 SINE B2 1 202 -14 5 1531 261 0 0 0 chr5 124019920 124019949 -28517310 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5 1531 480 48 0 0 chr5 124020025 124020088 -28517171 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1531 492 266 47 0 chr5 124020630 124020758 -28516501 + RSINE1 SINE B4 4 137 -28 6 1531 191 88 29 0 chr5 124020782 124020816 -28516443 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 6 1531 222 313 84 0 chr5 124021251 124021263 -28515996 - ID_B1 SINE B4 -128 96 7 6 1531 277 324 0 0 chr5 124021263 124021334 -28515925 - ID4 SINE ID -6 77 7 6 1531 445 262 76 27 chr5 124021669 124021853 -28515406 - B3A SINE B2 -1 197 5 6 1531 1196 55 0 0 chr5 124022158 124022304 -28514955 - B1_Mus1 SINE Alu -1 147 2 6 1531 403 122 135 0 chr5 124022538 124022612 -28514647 + PB1D9 SINE Alu 28 111 -9 6 1531 1116 56 0 14 chr5 124023215 124023361 -28513898 - B1_Mus2 SINE Alu -1 146 3 6 1531 547 236 119 75 chr5 124023223 124023383 -28513876 - B4 SINE B4 -73 219 53 6 1531 555 137 19 10 chr5 124023503 124023606 -28513653 + B1_Mur2 SINE Alu 45 148 -1 6 1531 710 226 102 35 chr5 124023614 124023722 -28513537 + B3 SINE B2 2 116 -100 7 1531 1655 142 34 116 chr5 124023722 124024169 -28513090 - RMER17C LTR ERVK 0 410 1 7 1531 710 226 102 35 chr5 124024169 124024257 -28513002 + B3 SINE B2 117 211 -5 7 1531 450 183 173 55 chr5 124024259 124024386 -28512873 + B3A SINE B2 8 149 -49 7 1531 1221 99 17 0 chr5 124024444 124024616 -28512643 - B2_Mm2 SINE B2 -20 175 1 7 1531 210 241 86 65 chr5 124024737 124024830 -28512429 + ID_B1 SINE B4 82 176 -48 7 1531 349 250 43 0 chr5 124024750 124024842 -28512417 + PB1D10 SINE Alu 12 107 -10 7 1531 219 272 11 90 chr5 124024842 124024931 -28512328 + ID4 SINE ID 2 83 0 7 1531 29 0 0 0 chr5 124025022 124025051 -28512208 + AT_rich Low_complexity Low_complexity 1 29 0 7 1531 1292 99 11 0 chr5 124025061 124025221 -28512038 + B2_Mm2 SINE B2 1 162 -33 7 1531 581 188 155 28 chr5 124025221 124025402 -28511857 - B3 SINE B2 -12 204 1 7 1531 1292 99 11 0 chr5 124025402 124025422 -28511837 + B2_Mm2 SINE B2 163 182 -13 7 1531 315 246 31 0 chr5 124025878 124025943 -28511316 - ID_B1 SINE B4 -15 209 143 8 1531 292 236 9 49 chr5 124026007 124026093 -28511166 + B1_Mus2 SINE Alu 60 147 -2 8 1531 1253 71 59 0 chr5 124026110 124026280 -28510979 + B2_Mm1t SINE B2 2 181 -12 8 1531 327 130 0 36 chr5 124026300 124026356 -28510903 + B2_Mm2 SINE B2 47 100 -95 8 1531 27 0 0 0 chr5 124026382 124026409 -28510850 + AT_rich Low_complexity Low_complexity 1 27 0 8 1531 452 267 2 16 chr5 124026568 124026679 -28510580 - PB1D7 SINE Alu -24 123 21 8 1531 567 254 229 13 chr5 124026773 124027004 -28510255 - B4 SINE B4 -8 284 4 8 1531 290 300 41 106 chr5 124027004 124027020 -28510239 - PB1D10 SINE Alu -2 115 1 8 1531 406 276 47 19 chr5 124027020 124027127 -28510132 - ID_B1 SINE B4 -33 191 82 8 1531 524 196 113 0 chr5 124027196 124027293 -28509966 - B1_Mus2 SINE Alu -16 131 24 8 1531 837 130 23 8 chr5 124027341 124027473 -28509786 - B1_Mur4 SINE Alu -16 134 1 9 1531 511 204 21 0 chr5 124027483 124027576 -28509683 - ID_B1 SINE B4 -8 216 122 9 1531 21 0 0 0 chr5 124029094 124029115 -28508144 + AT_rich Low_complexity Low_complexity 1 21 0 9 1531 888 152 170 21 chr5 124029655 124029843 -28507416 + B3 SINE B2 1 216 0 9 1531 310 77 0 0 chr5 124030586 124030625 -28506634 - HAL1-3A_ME LINE L1 -843 2015 1977 9 1531 186 208 0 0 chr5 124030626 124030674 -28506585 + (CGTG)n Simple_repeat Simple_repeat 2 49 0 9 1531 247 186 22 0 chr5 124030958 124031015 -28506244 - PB1D10 SINE Alu -2 147 65 9 1531 456 236 28 0 chr5 124031020 124031126 -28506133 + PB1D9 SINE Alu 12 120 0 9 1531 324 284 81 18 chr5 124031170 124031281 -28505978 - PB1D7 SINE Alu -2 118 1 9 1531 873 162 161 36 chr5 124031284 124031476 -28505783 - B3 SINE B2 0 216 1 9 1531 396 171 65 12 chr5 124031789 124031884 -28505375 + Lx LINE L1 5699 5824 -2058 1 1531 1476 74 16 0 chr5 124031931 124032121 -28505138 + B2_Mm2 SINE B2 1 193 -2 1 1531 266 223 122 37 chr5 124032135 124032242 -28505017 + PB1D10 SINE Alu 2 117 0 1 1531 790 94 165 0 chr5 124032249 124032376 -28504883 + B1_Mus1 SINE Alu 1 148 0 1 1531 331 282 97 8 chr5 124032398 124032533 -28504726 - PB1 SINE Alu -11 116 1 1 1531 264 317 9 9 chr5 124034592 124034697 -28502562 + L1MD3 LINE L1 7686 7790 -205 1 1531 198 0 0 0 chr5 124034980 124035002 -28502257 + (G)n Simple_repeat Simple_repeat 1 22 0 1 1531 464 229 102 48 chr5 124035793 124035940 -28501319 + RSINE1 SINE B4 11 165 0 1 1531 325 0 22 22 chr5 124036473 124036519 -28500740 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1531 687 201 8 7 chr5 124037081 124037218 -28500041 - B1_Mur1 SINE Alu 0 149 13 1 1531 529 246 95 0 chr5 124037354 124037480 -28499779 - ID_B1 SINE B4 -6 218 81 1 1531 407 68 17 0 chr5 124037523 124037582 -28499677 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1531 751 207 0 54 chr5 124037582 124037730 -28499529 - RSINE1 SINE B4 -20 145 6 1 1531 267 239 99 0 chr5 124038462 124038533 -28498726 - PB1D10 SINE Alu 0 117 40 1 1531 447 211 31 21 chr5 124039241 124039338 -28497921 - ID_B1 SINE B4 0 224 127 1 1531 21 0 0 0 chr5 124039433 124039454 -28497805 + AT_rich Low_complexity Low_complexity 1 21 0 1 1531 216 0 0 0 chr5 124039458 124039482 -28497777 + (TATG)n Simple_repeat Simple_repeat 3 26 0 1 1531 759 142 17 0 chr5 124039491 124039611 -28497648 - B1_Mur1 SINE Alu -14 135 14 1 1531 439 250 45 45 chr5 124039611 124039625 -28497634 - ID_B1 SINE B4 -14 210 77 1 1531 257 327 109 0 chr5 124039618 124039719 -28497540 - ID_B1 SINE B4 0 224 113 1 1531 717 213 14 7 chr5 124039939 124040081 -28497178 - B1_Mur3 SINE Alu -6 143 1 1 1531 1173 83 0 0 chr5 124040099 124040244 -28497015 - B1_Mus2 SINE Alu -1 146 2 1 1531 330 287 73 9 chr5 124040249 124040358 -28496901 - PB1D10 SINE Alu 0 117 2 1 1531 494 219 195 0 chr5 124041080 124041203 -28496056 - B1_Mur1 SINE Alu 0 149 3 1 1531 261 262 16 0 chr5 124041207 124041268 -28495991 - ID_B1 SINE B4 -6 218 157 1 1531 1116 69 0 0 chr5 124041494 124041639 -28495620 + B1_Mus1 SINE Alu 2 146 -2 1 1531 330 26 0 0 chr5 124041639 124041678 -28495581 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1531 284 82 40 20 chr5 124041844 124041894 -28495365 - B1_Mur4 SINE Alu -1 149 99 1 1531 491 269 43 16 chr5 124041895 124042080 -28495179 - L1M4 LINE L1 -3829 2317 2128 1 1531 293 214 14 54 chr5 124042209 124042283 -28494976 - PB1D10 SINE Alu 0 117 47 1 1531 317 280 250 0 chr5 124042389 124042489 -28494770 + PB1 SINE Alu 1 125 -2 1 1531 378 308 28 0 chr5 124042923 124043030 -28494229 + PB1D10 SINE Alu 3 112 -5 1 1531 658 201 203 16 chr5 124043269 124043451 -28493808 + B3 SINE B2 1 216 0 1 1531 350 250 0 12 chr5 124044299 124044380 -28492879 + RSINE1 SINE B4 3 82 -83 1 1531 1165 185 0 50 chr5 124044686 124044908 -28492351 - URR1A DNA MER1_type -15 211 1 1 1531 258 328 42 79 chr5 124045292 124045481 -28491778 - B4A SINE B4 -15 277 96 1 1531 521 227 8 25 chr5 124045499 124045621 -28491638 - B1_Mur1 SINE Alu 0 149 30 1 1531 36 23 0 0 chr5 124045722 124045765 -28491494 + AT_rich Low_complexity Low_complexity 1 43 0 1 1531 638 143 103 0 chr5 124045947 124046073 -28491186 + RCHARR1 DNA MER1_type 520 658 -316 1 1531 754 183 0 23 chr5 124046085 124046214 -28491045 - B1_Mur1 SINE Alu -3 146 21 1 1531 1240 218 45 17 chr5 124046214 124046503 -28490756 + RCHARR1 DNA MER1_type 655 951 -23 1 1531 625 256 8 8 chr5 124046519 124046653 -28490606 + ID_B1 SINE B4 87 220 -4 1 1531 308 240 49 59 chr5 124047376 124047478 -28489781 + ID_B1 SINE B4 90 190 -34 1 1531 318 263 13 0 chr5 124047701 124047777 -28489482 - RSINE1 SINE B4 -85 80 4 1 1531 508 227 145 18 chr5 124048076 124048235 -28489024 + L1MB5 LINE L1 5902 6072 -102 1 1531 242 288 37 12 chr5 124048235 124048316 -28488943 + 4.5SRNA scRNA scRNA 4 86 -8 1 1531 783 93 0 0 chr5 124048266 124048374 -28488885 + B1_Mus2 SINE Alu 40 147 0 1 1531 828 204 0 0 chr5 124048374 124048550 -28488709 + GA-rich Low_complexity Low_complexity 2 177 0 1 1531 300 265 84 90 chr5 124048784 124048950 -28488309 + RSINE1 SINE B4 1 165 0 1 1531 410 256 248 0 chr5 124049110 124049239 -28488020 + RSINE1 SINE B4 3 163 -2 1 1531 704 175 288 18 chr5 124049277 124049440 -28487819 - B3 SINE B2 -9 207 1 1 1531 536 248 45 37 chr5 124049684 124049864 -28487395 - ID_B1 SINE B4 -46 246 66 1 1531 212 73 73 0 chr5 124050120 124050161 -28487098 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 1 1531 278 288 0 0 chr5 124050215 124050281 -28486978 - tRNA-Ala-GCA tRNA tRNA -7 68 3 1 1531 276 355 0 25 chr5 124050703 124050784 -28486475 - ID4 SINE ID -3 80 2 1 1531 502 221 32 96 chr5 124051040 124051165 -28486094 - PB1 SINE Alu -9 118 2 1 1531 1122 44 22 0 chr5 124051198 124051335 -28485924 - B1_Mus1 SINE Alu -8 140 1 1 1531 243 293 11 99 chr5 124051381 124051472 -28485787 + ID_B1 SINE B4 14 96 -128 1 1531 299 256 12 35 chr5 124051583 124051668 -28485591 - B1F SINE Alu -2 147 65 1 1531 493 254 8 0 chr5 124051641 124051763 -28485496 - ID_B1 SINE B4 -26 198 76 1 1531 375 220 190 25 chr5 124052536 124052657 -28484602 + B1F SINE Alu 3 143 -6 1 1531 363 23 0 0 chr5 124052983 124053027 -28484232 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1531 573 79 0 29 chr5 124053303 124053407 -28483852 + (TG)n Simple_repeat Simple_repeat 1 101 0 1 1531 307 178 0 64 chr5 124054409 124054487 -28482772 + Lx4B LINE L1 6982 7054 -4 1 1531 1524 230 92 18 chr5 124055013 124055394 -28481865 + MTD LTR MaLR 9 417 -2 1 1531 411 21 0 0 chr5 124055401 124055449 -28481810 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1531 398 238 39 10 chr5 124055583 124055685 -28481574 - PB1D10 SINE Alu -11 106 2 1 1531 635 186 53 0 chr5 124055806 124055919 -28481340 + PB1D9 SINE Alu 1 119 -1 1 1531 180 77 0 0 chr5 124055923 124055949 -28481310 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1531 390 198 33 44 chr5 124056069 124056159 -28481100 + RSINE1 SINE B4 16 104 -61 1 1531 679 266 47 18 chr5 124056249 124056528 -28480731 - B4A SINE B4 -3 289 3 1 1531 1181 28 21 0 chr5 124056789 124056930 -28480329 + B1_Mus1 SINE Alu 5 148 0 1 1531 485 105 0 11 chr5 124057123 124057210 -28480049 + (CA)n Simple_repeat Simple_repeat 1 86 0 1 1531 437 252 19 0 chr5 124057680 124057787 -28479472 - PB1D7 SINE Alu -11 109 1 1 1531 198 0 0 0 chr5 124058301 124058323 -28478936 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1531 1017 291 22 11 chr5 124058343 124058618 -28478641 - B4A SINE B4 -7 285 8 1 1531 738 200 0 8 chr5 124058610 124058731 -28478528 - B1F SINE Alu -29 120 1 1 1531 1012 113 0 27 chr5 124058786 124058932 -28478327 - B1_Mur3 SINE Alu -7 142 1 1 1531 252 254 18 0 chr5 124059653 124059708 -28477551 - B4 SINE B4 -157 135 80 1 1531 1124 29 81 0 chr5 124060303 124060439 -28476820 - B1_Mm SINE Alu 0 147 1 1 1531 359 307 35 8 chr5 124061152 124061248 -28476011 - PB1D10 SINE Alu -17 100 8 1 1531 1427 69 5 26 chr5 124061345 124061538 -28475721 + B2_Mm1a SINE B2 2 190 -3 1 1531 1140 59 0 0 chr5 124061564 124061700 -28475559 + B1_Mus1 SINE Alu 1 136 -12 1 1531 184 30 61 0 chr5 124061701 124061734 -28475525 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1531 315 0 0 0 chr5 124062916 124062951 -28474308 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1531 242 254 0 0 chr5 124066052 124066107 -28471152 + MER3 DNA MER1_type 155 209 0 1 1531 232 294 59 0 chr5 124068110 124068178 -28469081 - B4A SINE B4 -209 83 12 1 1531 28 29 0 0 chr5 124068215 124068250 -28469009 + AT_rich Low_complexity Low_complexity 1 35 0 1 1531 701 225 21 7 chr5 124068445 124068588 -28468671 + B1_Mur2 SINE Alu 2 146 -3 1 1531 384 22 0 0 chr5 124068613 124068658 -28468601 + (CAGG)n Simple_repeat Simple_repeat 2 46 0 1 1531 916 246 39 0 chr5 124068664 124068871 -28468388 + B3 SINE B2 2 216 0 1 1531 1311 231 14 3 chr5 124069041 124069328 -28467931 + B4 SINE B4 1 290 -2 1 1531 694 153 130 0 chr5 124069661 124069792 -28467467 + B1_Mur2 SINE Alu 1 148 -1 1 1531 471 197 0 0 chr5 124070345 124070523 -28466736 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 1531 380 196 12 0 chr5 124070525 124070688 -28466571 + (CAGA)n Simple_repeat Simple_repeat 2 166 0 1 1531 180 0 0 0 chr5 124070736 124070756 -28466503 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1531 898 71 159 0 chr5 124070756 124070882 -28466377 - B1_Mus2 SINE Alu 0 147 2 1 1531 3092 36 19 98 chr5 124070959 124071196 -28466063 - MTA_Mm LTR MaLR 0 396 173 1 1531 1565 48 0 0 chr5 124071196 124071383 -28465876 - B2_Mm1a SINE B2 -6 187 1 1 1531 3092 36 19 98 chr5 124071383 124071575 -28465684 - MTA_Mm LTR MaLR -224 172 1 1 1531 519 115 150 80 chr5 124071606 124071719 -28465540 - B1_Mm SINE Alu 0 147 27 1 1531 204 179 0 0 chr5 124072002 124072041 -28465218 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 1 1531 338 286 159 11 chr5 124072044 124072298 -28464961 - L2a LINE L2 -13 3374 3105 2 1531 235 259 56 0 chr5 124073565 124073619 -28463640 + ZP3AR Satellite Satellite 26 82 -130 2 1531 437 263 0 8 chr5 124073580 124073714 -28463545 + BC1_Mm scRNA scRNA 2 134 -18 2 1531 850 165 4 191 chr5 124073944 124074206 -28463053 - B3 SINE B2 0 216 4 2 1531 1165 111 35 0 chr5 124074282 124074454 -28462805 + B2_Mm1t SINE B2 2 179 -14 2 1531 409 104 0 5 chr5 124074486 124074551 -28462708 + B2_Mm2 SINE B2 47 109 -107 2 1531 26 30 0 0 chr5 124074565 124074598 -28462661 + AT_rich Low_complexity Low_complexity 1 33 0 2 1531 771 197 36 0 chr5 124074823 124074960 -28462299 + B1_Mur3 SINE Alu 3 144 -5 2 1531 893 228 5 22 chr5 124074985 124075169 -28462090 - B3A SINE B2 -16 182 2 2 1531 511 245 54 66 chr5 124075211 124075377 -28461882 - RSINE1 SINE B4 0 165 2 2 1531 752 243 0 0 chr5 124075413 124075557 -28461702 + B1_Mur1 SINE Alu 1 144 -5 2 1531 297 183 0 0 chr5 124075558 124075618 -28461641 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1531 225 0 0 0 chr5 124075777 124075802 -28461457 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1531 1199 42 14 0 chr5 124075802 124075946 -28461313 - B1_Mm SINE Alu 0 147 2 2 1531 848 239 0 71 chr5 124075972 124076184 -28461075 + B3A SINE B2 1 197 -1 2 1531 590 221 61 38 chr5 124076209 124076341 -28460918 + B1F SINE Alu 15 149 0 2 1531 682 216 21 7 chr5 124076608 124076748 -28460511 - B1_Mur1 SINE Alu -1 148 7 2 1531 188 34 0 33 chr5 124076901 124076931 -28460328 + (TGGGGG)n Simple_repeat Simple_repeat 3 31 0 2 1531 189 0 0 0 chr5 124077505 124077526 -28459733 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2 1531 290 143 0 0 chr5 124077616 124077665 -28459594 - B1_Mur2 SINE Alu -34 115 67 2 1531 249 33 0 0 chr5 124077725 124077755 -28459504 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1531 249 275 110 24 chr5 124077755 124077831 -28459428 - B3 SINE B2 -29 187 104 2 1531 816 158 0 7 chr5 124077916 124078056 -28459203 - B1_Mus1 SINE Alu 0 148 10 2 1531 475 231 6 70 chr5 124078056 124078068 -28459191 - ID_B1 SINE B4 0 185 77 2 1531 495 0 0 0 chr5 124078209 124078266 -28458993 + U2 snRNA snRNA 1 57 -131 2 1531 521 254 14 35 chr5 124078831 124078967 -28458292 + B1F SINE Alu 3 136 -13 2 1531 213 39 0 0 chr5 124078967 124078993 -28458266 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1531 333 317 10 0 chr5 124079018 124079119 -28458140 + PB1D10 SINE Alu 5 106 -11 2 1531 1108 205 156 38 chr5 124079156 124079470 -28457789 + ORR1D1 LTR MaLR 1 351 -23 2 1531 404 250 86 0 chr5 124079708 124079824 -28457435 - PB1 SINE Alu 0 127 2 2 1531 436 288 110 71 chr5 124081653 124081715 -28455544 + MER33 DNA MER1_type 57 121 -203 2 1531 1443 58 26 5 chr5 124081715 124081904 -28455355 + B2_Mm2 SINE B2 2 194 -1 2 1531 436 288 110 71 chr5 124081904 124082095 -28455164 + MER33 DNA MER1_type 122 319 -5 2 1531 200 244 0 0 chr5 124083550 124083591 -28453668 + T-rich Low_complexity Low_complexity 1 41 0 2 1531 414 194 0 0 chr5 124083657 124083724 -28453535 - B1F SINE Alu -82 67 1 2 1531 1090 245 30 26 chr5 124083826 124084090 -28453169 - B4 SINE B4 -25 267 3 2 1531 245 331 131 67 chr5 124084390 124084612 -28452647 + MIR SINE MIR 11 253 -15 2 1531 1118 96 18 6 chr5 124085852 124086019 -28451240 + B2_Mm1a SINE B2 24 192 -1 2 1531 565 242 31 8 chr5 124086062 124086191 -28451068 + B1F SINE Alu 12 143 -6 2 1531 543 188 40 0 chr5 124086970 124087071 -28450188 - B1F2 SINE Alu -6 143 39 2 1531 273 341 68 77 chr5 124086984 124087206 -28450053 - MT2B2 LTR ERVL -309 275 56 2 1531 442 290 35 42 chr5 124087359 124087503 -28449756 + ID_B1 SINE B4 82 224 0 2 1531 324 0 0 0 chr5 124087507 124087543 -28449716 + (GGAA)n Simple_repeat Simple_repeat 4 39 0 2 1531 596 171 29 0 chr5 124087543 124087683 -28449576 + GA-rich Low_complexity Low_complexity 2 145 0 2 1531 597 202 0 28 chr5 124087685 124087792 -28449467 + PB1D7 SINE Alu 12 115 -5 2 1531 283 259 192 33 chr5 124087792 124087805 -28449454 + B4A SINE B4 97 235 -57 2 1531 228 47 123 15 chr5 124089477 124089542 -28447717 + (TTATA)n Simple_repeat Simple_repeat 2 73 0 2 1531 195 42 0 0 chr5 124089542 124089566 -28447693 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1531 588 250 30 8 chr5 124089571 124089704 -28447555 + B1_Mur1 SINE Alu 2 137 -12 2 1531 898 103 0 14 chr5 124090947 124091094 -28446165 + (GA)n Simple_repeat Simple_repeat 1 145 0 2 1531 361 324 39 10 chr5 124091214 124091317 -28445942 + PB1D10 SINE Alu 4 109 -8 2 1531 186 103 0 0 chr5 124091388 124091417 -28445842 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 2 1531 253 330 42 8 chr5 124092910 124093029 -28444230 + B4 SINE B4 65 187 -105 2 1531 584 124 28 28 chr5 124092942 124093050 -28444209 + PB1D7 SINE Alu 12 119 -1 2 1531 840 71 0 0 chr5 124093416 124093528 -28443731 + (GGGGA)n Simple_repeat Simple_repeat 4 115 0 2 1531 230 222 0 0 chr5 124093578 124093623 -28443636 + GA-rich Low_complexity Low_complexity 4 48 0 2 1531 655 336 58 31 chr5 124094298 124094590 -28442669 + MER119 DNA MER1_type 81 380 -203 2 1531 312 291 72 64 chr5 124094603 124094728 -28442531 + B3A SINE B2 1 126 -72 2 1531 336 309 36 25 chr5 124094728 124094755 -28442504 + B4A SINE B4 2 161 -4 2 1531 240 205 48 60 chr5 124096609 124096692 -28440567 + ID4 SINE ID 1 82 -1 2 1531 239 237 39 58 chr5 124096692 124096712 -28440547 + B4 SINE B4 1 101 -191 2 1531 288 279 0 0 chr5 124097227 124097288 -28439971 + B4 SINE B4 149 209 -83 2 1531 645 180 41 8 chr5 124097403 124097526 -28439733 + B1_Mur2 SINE Alu 6 132 -17 2 1531 501 17 0 0 chr5 124097527 124097585 -28439674 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 2 1531 326 325 24 49 chr5 124097617 124097740 -28439519 + PB1D7 SINE Alu 1 120 0 2 1531 552 235 10 0 chr5 124098676 124098778 -28438481 + ID_B1 SINE B4 82 184 -40 2 1531 480 145 108 0 chr5 124098774 124098857 -28438402 + B1_Mus2 SINE Alu 43 134 -13 2 1531 1545 67 0 5 chr5 124098957 124099151 -28438108 + B2_Mm2 SINE B2 2 194 -1 2 1531 934 167 194 0 chr5 124099546 124099726 -28437533 - B3 SINE B2 0 216 2 2 1531 1261 21 0 14 chr5 124099824 124099972 -28437287 - B1_Mus2 SINE Alu -1 146 1 2 1531 670 216 13 67 chr5 124099981 124100130 -28437129 - B1_Mur1 SINE Alu -5 144 4 2 1531 186 133 0 0 chr5 124100203 124100233 -28437026 + (T)n Simple_repeat Simple_repeat 1 30 0 2 1531 563 226 91 28 chr5 124100250 124100412 -28436847 + B3 SINE B2 1 180 -13 2 1531 998 224 48 0 chr5 124100535 124100745 -28436514 + ID_B1 SINE B4 3 222 -2 2 1531 237 333 0 15 chr5 124100745 124100812 -28436447 + MLT1A1 LTR MaLR 30 95 -313 2 1531 226 300 66 44 chr5 124100978 124101114 -28436145 + MLT1A1 LTR MaLR 268 406 -2 2 1531 368 260 50 0 chr5 124101114 124101214 -28436045 + ID_B1 SINE B4 114 218 -6 2 1531 442 264 28 0 chr5 124101362 124101468 -28435791 + B1F SINE Alu 36 144 -5 2 1531 239 227 45 0 chr5 124101489 124101555 -28435704 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 2 1531 536 284 101 82 chr5 124101639 124101858 -28435401 - B4 SINE B4 -69 223 1 2 1531 3315 53 0 2 chr5 124101858 124102255 -28435004 - MTA_Mm LTR MaLR 0 396 1 2 1531 474 244 9 9 chr5 124102302 124102418 -28434841 - PB1D10 SINE Alu 0 117 2 2 1531 21 36 0 0 chr5 124102418 124102446 -28434813 + AT_rich Low_complexity Low_complexity 1 28 0 2 1531 1285 95 39 16 chr5 124102449 124102631 -28434628 + B2_Mm2 SINE B2 1 186 -9 2 1531 944 164 7 0 chr5 124102715 124102861 -28434398 - B1_Mus1 SINE Alu 0 148 2 2 1531 1691 26 0 0 chr5 124102962 124103154 -28434105 + B2_Mm1a SINE B2 2 193 0 2 1531 577 137 0 67 chr5 124103283 124103432 -28433827 + GA-rich Low_complexity Low_complexity 1 139 0 2 1531 831 216 100 0 chr5 124104111 124104301 -28432958 + B3 SINE B2 5 213 -3 2 1531 243 0 0 0 chr5 124104432 124104459 -28432800 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1531 252 0 0 0 chr5 124104717 124104745 -28432514 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 2 1531 219 368 42 17 chr5 124105001 124105120 -28432139 + MIRb SINE MIR 74 195 -73 2 1531 256 103 0 0 chr5 124105371 124105410 -28431849 + MLT1A1 LTR MaLR 323 361 -47 2 1531 305 195 0 22 chr5 124105428 124105494 -28431765 + B2_Mm2 SINE B2 47 109 -107 2 1531 949 204 0 32 chr5 124105516 124105703 -28431556 + B3A SINE B2 12 192 -6 2 1531 740 233 7 14 chr5 124105725 124105873 -28431386 + B1_Mus2 SINE Alu 1 147 0 2 1531 1335 82 16 16 chr5 124106202 124106388 -28430871 + B2_Mm2 SINE B2 2 187 -8 2 1531 4910 59 3 5 chr5 124106396 124107013 -28430246 + L1_Mus3 LINE L1 6023 6638 0 2 1531 1534 52 5 0 chr5 124107039 124107230 -28430029 + B2_Mm1t SINE B2 1 192 -1 2 1531 995 25 0 0 chr5 124107346 124107467 -28429792 + B1_Mm SINE Alu 27 147 0 2 1531 790 182 7 45 chr5 124107570 124107725 -28429534 - B1_Mur2 SINE Alu 0 149 1 2 1531 336 219 225 8 chr5 124108026 124108155 -28429104 + MER5A DNA MER1_type 31 187 -2 2 1531 316 308 53 23 chr5 124108399 124108532 -28428727 + YREP_Mm Unknown Unknown 157 293 -1519 2 1531 645 214 24 0 chr5 124108420 124108546 -28428713 - ID_B1 SINE B4 -5 219 91 2 1531 483 33 0 0 chr5 124108552 124108613 -28428646 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1531 413 252 91 84 chr5 124108620 124108763 -28428496 - RSINE1 SINE B4 -21 144 1 3 1531 395 308 9 9 chr5 124108771 124108876 -28428383 - PB1D7 SINE Alu -7 113 9 3 1531 420 20 0 0 chr5 124110061 124110110 -28427149 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1531 503 196 0 38 chr5 124110110 124110211 -28427048 - B1_Mur1 SINE Alu -4 145 48 3 1531 219 317 0 0 chr5 124110324 124110384 -28426875 - B3A SINE B2 -134 64 5 3 1531 595 208 138 35 chr5 124110580 124110754 -28426505 + B3A SINE B2 3 194 -4 3 1531 780 194 7 0 chr5 124110775 124110919 -28426340 + B1_Mus2 SINE Alu 2 146 -1 3 1531 982 244 19 0 chr5 124110985 124111190 -28426069 - ID_B1 SINE B4 -6 218 10 3 1531 274 233 133 27 chr5 124111235 124111310 -28425949 + PB1D10 SINE Alu 28 110 -7 3 1531 486 140 0 0 chr5 124111310 124111410 -28425849 + (GGA)n Simple_repeat Simple_repeat 1 100 0 3 1531 329 82 19 6 chr5 124111422 124111482 -28425777 + B1_Mus2 SINE Alu 91 149 0 3 1531 404 294 8 0 chr5 124111767 124111886 -28425373 + PB1D7 SINE Alu 1 120 0 3 1531 335 23 0 22 chr5 124112019 124112064 -28425195 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1531 303 278 101 186 chr5 124112807 124113006 -28424253 - B3A SINE B2 -16 182 1 3 1531 385 155 14 27 chr5 124113108 124113181 -28424078 + RLTR11B LTR ERVK 360 431 -22 3 1531 588 250 0 8 chr5 124113210 124113335 -28423924 - RSINE1 SINE B4 -29 136 13 3 1531 372 250 47 19 chr5 124113337 124113443 -28423816 - PB1D7 SINE Alu -11 109 1 3 1531 1067 79 7 0 chr5 124113595 124113735 -28423524 + B1_Mus1 SINE Alu 3 143 -5 3 1531 518 191 0 17 chr5 124113737 124113854 -28423405 + GA-rich Low_complexity Low_complexity 4 118 0 3 1531 464 282 94 73 chr5 124114030 124114221 -28423038 + B3 SINE B2 20 214 -2 3 1531 183 100 0 0 chr5 124114356 124114386 -28422873 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1531 21 0 0 0 chr5 124114663 124114684 -28422575 + GC_rich Low_complexity Low_complexity 1 21 0 3 1531 326 245 155 31 chr5 124114720 124114817 -28422442 + B3 SINE B2 51 159 -57 3 1531 1696 21 0 0 chr5 124115047 124115237 -28422022 - B2_Mm1a SINE B2 0 193 4 3 1531 335 289 78 14 chr5 124115366 124115492 -28421767 + PB1D10 SINE Alu 3 122 -27 3 1531 354 159 0 0 chr5 124115492 124115561 -28421698 + (CA)n Simple_repeat Simple_repeat 1 69 0 3 1531 403 286 62 16 chr5 124115562 124115690 -28421569 + B1F2 SINE Alu 1 134 -15 3 1531 548 207 8 41 chr5 124115787 124115908 -28421351 - PB1D9 SINE Alu -1 119 3 3 1531 289 164 158 40 chr5 124116077 124116153 -28421106 + B1_Mur4 SINE Alu 15 99 -51 3 1531 353 95 0 16 chr5 124116938 124117002 -28420257 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1531 27 0 0 0 chr5 124117415 124117442 -28419817 + AT_rich Low_complexity Low_complexity 1 27 0 3 1531 189 26 79 0 chr5 124117442 124117480 -28419779 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 1531 283 151 176 55 chr5 124117521 124117612 -28419647 - B1F SINE Alu -43 106 5 3 1531 848 205 68 24 chr5 124117765 124117970 -28419289 + B3 SINE B2 3 216 0 3 1531 389 333 0 0 chr5 124117981 124118086 -28419173 - ID_B1 SINE B4 -30 194 90 3 1531 445 237 59 42 chr5 124118108 124118227 -28419032 - B3 SINE B2 0 216 96 3 1531 273 274 58 78 chr5 124118317 124118420 -28418839 - MER33 DNA MER1_type -194 130 30 3 1531 353 308 143 17 chr5 124118476 124118714 -28418545 + MLT1J1 LTR MaLR 6 273 -171 3 1531 311 274 0 54 chr5 124118758 124118943 -28418316 + GA-rich Low_complexity Low_complexity 2 176 0 3 1531 644 235 130 58 chr5 124119024 124119232 -28418027 + ID_B1 SINE B4 2 224 0 3 1531 21 57 0 0 chr5 124119459 124119494 -28417765 + AT_rich Low_complexity Low_complexity 1 35 0 3 1531 1149 91 62 17 chr5 124119615 124119793 -28417466 - B2_Mm2 SINE B2 -8 187 2 3 1531 23 0 0 0 chr5 124119801 124119824 -28417435 + AT_rich Low_complexity Low_complexity 1 23 0 3 1531 1054 226 10 0 chr5 124119861 124120065 -28417194 - B3 SINE B2 -10 206 1 3 1531 380 229 146 0 chr5 124120081 124120177 -28417082 - PB1D10 SINE Alu -5 112 3 3 1531 349 255 320 41 chr5 124120177 124120252 -28417007 - ID_B1 SINE B4 -4 219 1 3 1531 599 263 0 49 chr5 124120252 124120403 -28416856 + ID_B1 SINE B4 82 224 0 3 1531 1594 57 0 0 chr5 124121748 124121941 -28415318 + B2_Mm1t SINE B2 1 193 0 3 1531 1112 64 0 0 chr5 124121986 124122126 -28415133 + B1_Mus2 SINE Alu 8 147 0 3 1531 267 152 0 0 chr5 124122126 124122172 -28415087 + A-rich Low_complexity Low_complexity 1 46 0 3 1531 628 242 31 0 chr5 124122247 124122375 -28414884 - B4A SINE B4 -77 215 84 3 1531 617 150 20 0 chr5 124122384 124122484 -28414775 - B1_Mur4 SINE Alu -1 149 48 3 1531 718 294 118 28 chr5 124122546 124122801 -28414458 - B4A SINE B4 -14 278 1 3 1531 474 323 23 0 chr5 124122809 124122939 -28414320 - ID_B1 SINE B4 -6 218 86 3 1531 435 271 121 79 chr5 124122966 124123246 -28414013 + B4 SINE B4 1 292 0 3 1531 188 67 33 0 chr5 124123257 124123287 -28413972 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1531 1315 202 113 125 chr5 124123771 124124051 -28413208 - MTD LTR MaLR 0 419 112 3 1531 1193 68 0 0 chr5 124124051 124124198 -28413061 + B1_Mus1 SINE Alu 1 147 -1 3 1531 1315 202 113 125 chr5 124124198 124124222 -28413037 - MTD LTR MaLR -308 111 111 3 1531 1123 68 152 6 chr5 124124222 124124386 -28412873 + B2_Mm2 SINE B2 3 190 -5 3 1531 1315 202 113 125 chr5 124124386 124124504 -28412755 - MTD LTR MaLR -308 111 1 3 1531 521 190 90 0 chr5 124124585 124124685 -28412574 - PB1D9 SINE Alu -2 118 10 3 1531 233 227 23 148 chr5 124124619 124124707 -28412552 - MT2B LTR ERVL -371 230 154 3 1531 347 215 0 48 chr5 124124726 124124809 -28412450 + ID4_ SINE ID 5 83 0 3 1532 221 28 83 0 chr5 124125295 124125331 -28411928 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1532 230 344 117 18 chr5 124125789 124125952 -28411307 - MIR3 SINE MIR -5 203 25 3 1532 1125 22 7 0 chr5 124126046 124126183 -28411076 + B1_Mus1 SINE Alu 11 148 0 3 1532 258 32 0 0 chr5 124126183 124126214 -28411045 + (A)n Simple_repeat Simple_repeat 1 31 0 3 1532 1148 55 0 20 chr5 124126340 124126489 -28410770 + B1_Mm SINE Alu 2 147 0 3 1532 236 241 88 12 chr5 124127186 124127292 -28409967 - MIRb SINE MIR -58 210 92 3 1532 598 266 27 30 chr5 124127435 124127621 -28409638 + B3A SINE B2 1 176 -40 3 1532 452 238 208 24 chr5 124127621 124127746 -28409513 + B1F2 SINE Alu 2 149 0 3 1532 1505 53 11 0 chr5 124127752 124127942 -28409317 + B2_Mm1t SINE B2 2 193 0 3 1532 409 298 24 87 chr5 124127942 124127954 -28409305 + B2_Mm2 SINE B2 179 192 -3 3 1532 255 333 58 0 chr5 124127973 124128042 -28409217 + B4 SINE B4 3 75 -217 3 1532 1140 48 7 20 chr5 124128074 124128223 -28409036 + B1_Mus1 SINE Alu 1 147 -1 3 1532 669 273 25 90 chr5 124128238 124128439 -28408820 + B4 SINE B4 82 269 -23 3 1532 342 0 0 0 chr5 124128439 124128477 -28408782 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1532 273 29 0 0 chr5 124128477 124128510 -28408749 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1532 1022 136 0 0 chr5 124128626 124128773 -28408486 - B1_Mus1 SINE Alu 0 148 2 3 1532 514 259 35 0 chr5 124128776 124128892 -28408367 - PB1D9 SINE Alu 0 120 1 3 1532 215 196 21 21 chr5 124128985 124129032 -28408227 + RSINE1 SINE B4 3 49 -116 3 1532 1170 181 205 10 chr5 124129120 124129422 -28407837 + ORR1D2 LTR MaLR 3 363 -7 3 1532 621 38 0 0 chr5 124129472 124129552 -28407707 + (CA)n Simple_repeat Simple_repeat 1 80 0 3 1532 516 273 66 36 chr5 124130097 124130264 -28406995 + AmnSINE1 SINE SINE 186 357 -218 3 1532 1269 73 90 6 chr5 124130437 124130615 -28406644 + B2_Mm2 SINE B2 1 193 -2 3 1532 189 107 0 0 chr5 124130986 124131014 -28406245 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 3 1532 1221 21 7 14 chr5 124131015 124131160 -28406099 - B1_Mus1 SINE Alu -4 144 1 3 1532 441 214 43 26 chr5 124131296 124131411 -28405848 + PB1D10 SINE Alu 1 117 0 3 1532 200 182 0 0 chr5 124131485 124131518 -28405741 + (TGGA)n Simple_repeat Simple_repeat 2 34 0 3 1532 467 370 53 61 chr5 124131599 124131993 -28405266 + L2a LINE L2 3022 3412 -14 3 1532 853 189 0 13 chr5 124132158 124132308 -28404951 + B1_Mus1 SINE Alu 1 148 0 3 1532 263 271 72 79 chr5 124132675 124132827 -28404432 + MIRb SINE MIR 118 268 0 3 1532 222 62 0 0 chr5 124133078 124133110 -28404149 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 3 1532 195 42 0 0 chr5 124133139 124133163 -28404096 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 3 1532 37 0 0 0 chr5 124133355 124133392 -28403867 + AT_rich Low_complexity Low_complexity 1 37 0 3 1532 23 0 0 0 chr5 124134383 124134406 -28402853 + GC_rich Low_complexity Low_complexity 1 23 0 3 1532 22 70 0 0 chr5 124134412 124134455 -28402804 + GC_rich Low_complexity Low_complexity 1 43 0 3 1532 673 145 17 25 chr5 124135497 124135617 -28401642 - B1_Mm SINE Alu 0 147 29 3 1532 281 85 0 146 chr5 124135605 124135660 -28401599 + B1_Mur4 SINE Alu 96 142 -8 3 1532 234 0 0 0 chr5 124135687 124135713 -28401546 + (TAA)n Simple_repeat Simple_repeat 1 26 0 3 1532 321 271 128 18 chr5 124135715 124135824 -28401435 + B1_Mur1 SINE Alu 1 121 -28 3 1532 443 308 13 82 chr5 124135762 124135849 -28401410 + ID_B1 SINE B4 8 222 0 4 1532 763 215 0 0 chr5 124135849 124135993 -28401266 + B1_Mus1 SINE Alu 5 148 0 4 1532 234 0 0 0 chr5 124136419 124136445 -28400814 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1532 361 283 103 9 chr5 124136504 124136611 -28400648 + B4 SINE B4 113 229 -63 4 1532 471 161 54 0 chr5 124136640 124136733 -28400526 + L1M4 LINE L1 5575 5672 -506 4 1532 809 176 212 0 chr5 124136737 124136907 -28400352 + B3 SINE B2 2 207 -9 4 1532 646 129 172 0 chr5 124136951 124137067 -28400192 + B1_Mur4 SINE Alu 10 145 -5 4 1532 212 254 17 17 chr5 124137069 124137129 -28400130 + (TA)n Simple_repeat Simple_repeat 1 60 0 4 1532 383 301 28 62 chr5 124137175 124137320 -28399939 + B1F2 SINE Alu 9 148 -1 4 1532 503 271 8 17 chr5 124137682 124137802 -28399457 + RSINE1 SINE B4 1 119 -46 4 1532 1134 45 0 0 chr5 124137803 124137937 -28399322 + B1_Mus1 SINE Alu 2 135 -13 4 1532 657 254 0 7 chr5 124137981 124138116 -28399143 - ID_B1 SINE B4 -10 214 81 4 1532 1137 88 0 0 chr5 124138130 124138278 -28398981 - B1_Mus1 SINE Alu 0 148 1 4 1532 243 328 60 0 chr5 124138323 124138390 -28398869 - B4 SINE B4 0 292 222 4 1532 314 187 179 39 chr5 124138399 124138477 -28398782 - B4A SINE B4 -203 89 1 4 1532 773 169 8 0 chr5 124138508 124138638 -28398621 + B1_Mus1 SINE Alu 6 136 -12 4 1532 454 254 0 82 chr5 124138512 124138658 -28398601 + ID_B1 SINE B4 90 223 -1 4 1532 1136 83 0 0 chr5 124139105 124139250 -28398009 + B1_Mm SINE Alu 3 147 0 4 1532 180 0 0 0 chr5 124139250 124139270 -28397989 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1532 1486 39 61 0 chr5 124139270 124139450 -28397809 + B2_Mm1a SINE B2 2 192 -1 4 1532 270 73 0 0 chr5 124139499 124139540 -28397719 + (A)n Simple_repeat Simple_repeat 1 41 0 4 1532 1272 20 0 0 chr5 124139733 124139879 -28397380 + B1_Mus1 SINE Alu 1 146 -2 4 1532 185 128 21 0 chr5 124139880 124139927 -28397332 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 4 1532 227 257 0 0 chr5 124140026 124140100 -28397159 + (TAAA)n Simple_repeat Simple_repeat 1 74 0 4 1532 211 294 0 14 chr5 124140596 124140665 -28396594 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 4 1532 230 56 56 0 chr5 124140681 124140717 -28396542 - PB1D9 SINE Alu -6 114 77 4 1532 226 195 0 0 chr5 124140764 124140805 -28396454 - MTC-int LTR MaLR 0 1258 1218 4 1532 222 37 0 0 chr5 124140815 124140842 -28396417 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 1532 188 34 0 33 chr5 124140842 124140872 -28396387 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1532 1160 55 7 40 chr5 124140874 124141026 -28396233 - B1_Mus2 SINE Alu 0 147 1 4 1532 844 189 200 0 chr5 124141357 124141532 -28395727 + B3 SINE B2 3 212 -4 4 1532 338 279 188 9 chr5 124141671 124141783 -28395476 + RSINE1 SINE B4 15 146 -19 4 1532 321 82 0 0 chr5 124141835 124141884 -28395375 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1532 320 185 15 44 chr5 124141980 124142048 -28395211 - B1_Mur3 SINE Alu -2 147 82 4 1532 729 89 25 151 chr5 124142093 124142252 -28395007 + B1_Mur3 SINE Alu 11 149 0 4 1532 216 176 0 0 chr5 124142393 124142427 -28394832 - PB1D9 SINE Alu -84 36 3 4 1532 1145 29 42 14 chr5 124142471 124142613 -28394646 - B1_Mus2 SINE Alu 0 147 2 4 1532 308 341 12 0 chr5 124142614 124142699 -28394560 - ID_B1 SINE B4 -69 155 70 4 1532 21 0 0 0 chr5 124142703 124142724 -28394535 + AT_rich Low_complexity Low_complexity 1 21 0 4 1532 680 221 13 40 chr5 124142844 124142995 -28394264 + B1_Mur1 SINE Alu 3 149 0 4 1532 791 219 12 43 chr5 124143062 124143268 -28393991 - B3 SINE B2 -4 194 1 4 1532 514 295 21 14 chr5 124143280 124143421 -28393838 - B1F SINE Alu -7 142 1 4 1532 234 0 0 0 chr5 124143789 124143815 -28393444 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1532 750 126 155 16 chr5 124143817 124143946 -28393313 - B1_Mur1 SINE Alu -1 148 2 4 1532 250 321 24 0 chr5 124144003 124144087 -28393172 + MTD LTR MaLR 313 398 -21 4 1532 472 347 20 20 chr5 124144095 124144242 -28393017 + RSINE1 SINE B4 17 163 -2 4 1532 360 220 110 0 chr5 124144286 124144377 -28392882 - PB1D10 SINE Alu -11 106 6 4 1532 750 160 30 8 chr5 124144949 124145081 -28392178 - B1_Mur1 SINE Alu -12 137 3 4 1532 533 211 0 0 chr5 124145084 124145179 -28392080 - RSINE1 SINE B4 -68 97 3 4 1532 667 245 93 88 chr5 124145203 124145262 -28391997 - ID_B1 SINE B4 -7 217 177 4 1532 1466 17 92 0 chr5 124145262 124145436 -28391823 + B2_Mm1a SINE B2 1 190 -3 4 1532 667 245 93 88 chr5 124145436 124145591 -28391668 - ID_B1 SINE B4 -48 176 2 4 1532 1143 75 0 7 chr5 124145781 124145928 -28391331 + B1_Mus1 SINE Alu 2 147 -1 4 1532 1277 107 11 0 chr5 124145968 124146145 -28391114 + B2_Mm1t SINE B2 1 179 -14 4 1532 357 115 27 11 chr5 124146192 124146303 -28390956 + B2_Mm2 SINE B2 47 195 0 4 1532 643 250 31 37 chr5 124146480 124146642 -28390617 + RSINE1 SINE B4 3 163 -2 4 1532 737 71 9 9 chr5 124146666 124146780 -28390479 + Lx2 LINE L1 6884 6997 0 4 1532 193 75 50 0 chr5 124146796 124146836 -28390423 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 1532 186 43 0 0 chr5 124147177 124147200 -28390059 + (TCC)n Simple_repeat Simple_repeat 1 23 0 4 1532 513 229 92 7 chr5 124147248 124147389 -28389870 - RSINE1 SINE B4 -11 154 2 4 1532 295 257 54 0 chr5 124147615 124147689 -28389570 - B1F SINE Alu -71 78 1 4 1532 343 256 51 0 chr5 124147748 124147826 -28389433 - ID4 SINE ID 0 83 2 4 1532 398 213 61 50 chr5 124147939 124148038 -28389221 + B3A SINE B2 55 154 -44 4 1532 399 21 0 0 chr5 124148038 124148086 -28389173 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1532 1196 62 0 0 chr5 124148128 124148274 -28388985 + B1_Mus2 SINE Alu 2 147 0 4 1532 252 289 85 62 chr5 124148487 124148616 -28388643 + YREP_Mm Unknown Unknown 165 296 -1516 4 1532 378 287 98 8 chr5 124148504 124148627 -28388632 - ID_B1 SINE B4 0 224 91 4 1532 238 237 141 87 chr5 124148774 124148889 -28388370 + ID_B1 SINE B4 20 148 -144 4 1532 407 198 70 0 chr5 124149065 124149151 -28388108 + PB1D10 SINE Alu 21 112 -5 4 1532 1136 50 57 0 chr5 124151576 124151716 -28385543 + B1_Mus1 SINE Alu 1 148 0 4 1532 959 73 84 42 chr5 124151776 124151918 -28385341 - B1_Mus1 SINE Alu 0 148 1 4 1532 209 211 19 19 chr5 124152127 124152180 -28385079 + CT-rich Low_complexity Low_complexity 4 56 0 4 1532 238 288 13 76 chr5 124152900 124152979 -28384280 + ID4_ SINE ID 1 74 -9 4 1532 370 293 43 8 chr5 124153148 124153265 -28383994 + B1F SINE Alu 29 149 0 4 1532 1217 54 0 0 chr5 124153454 124153601 -28383658 + B1_Mm SINE Alu 1 147 0 4 1532 180 0 0 0 chr5 124153601 124153621 -28383638 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1532 275 308 42 76 chr5 124154161 124154305 -28382954 + B4A SINE B4 8 146 -146 4 1532 268 221 186 0 chr5 124154259 124154345 -28382914 + PB1D10 SINE Alu 16 117 0 4 1532 231 321 0 0 chr5 124154379 124154432 -28382827 - ID_B1 SINE B4 -90 134 82 4 1532 313 211 217 1 chr5 124154813 124154897 -28382362 + PB1D10 SINE Alu 17 116 -1 4 1532 703 169 92 0 chr5 124154906 124155036 -28382223 + B1_Mus1 SINE Alu 6 147 -1 4 1532 1157 75 0 0 chr5 124155085 124155231 -28382028 - B1_Mus2 SINE Alu 0 147 2 4 1532 27 0 0 0 chr5 124155389 124155416 -28381843 + AT_rich Low_complexity Low_complexity 1 27 0 4 1532 822 213 114 74 chr5 124155426 124155737 -28381522 - Lx2B LINE L1 -99 6877 6543 4 1532 657 248 14 7 chr5 124155749 124155891 -28381368 - RSINE1 SINE B4 -21 144 2 4 1532 749 108 16 48 chr5 124156159 124156285 -28380974 - B1_Mus1 SINE Alu 0 148 27 4 1532 1426 85 16 0 chr5 124156332 124156521 -28380738 - B2_Mm2 SINE B2 -3 192 1 4 1532 1084 93 0 0 chr5 124156567 124156706 -28380553 - B1_Mus2 SINE Alu -8 139 1 4 1532 323 206 59 0 chr5 124156715 124156783 -28380476 - RSINE1 SINE B4 -8 157 86 4 1532 526 248 0 33 chr5 124156860 124156981 -28380278 - PB1D10 SINE Alu 0 117 1 4 1532 320 229 43 0 chr5 124157100 124157170 -28380089 - B1_Mm SINE Alu -57 90 18 4 1532 793 173 124 55 chr5 124157491 124157693 -28379566 - B3 SINE B2 0 216 1 4 1532 379 284 11 19 chr5 124157694 124157808 -28379451 - PB1D7 SINE Alu -3 117 4 4 1532 519 17 0 0 chr5 124159955 124160015 -28377244 + (CA)n Simple_repeat Simple_repeat 2 61 0 4 1532 333 301 105 28 chr5 124160530 124160711 -28376548 + L2 LINE L2 2269 2463 -956 4 1532 629 193 9 9 chr5 124160715 124160830 -28376429 + PB1D10 SINE Alu 1 115 -2 4 1532 294 346 73 7 chr5 124160968 124161105 -28376154 + L2 LINE L2 2594 2739 -680 4 1532 400 267 48 0 chr5 124161614 124161719 -28375540 - B1F SINE Alu 0 149 40 4 1532 316 332 39 100 chr5 124161719 124161845 -28375414 - ID_B1 SINE B4 0 224 8 4 1532 1076 60 15 0 chr5 124161952 124162085 -28375174 + B1_Mur3 SINE Alu 2 136 -13 4 1532 623 165 0 44 chr5 124162132 124162246 -28375013 + B1_Mur4 SINE Alu 33 141 -9 4 1532 186 43 0 0 chr5 124162246 124162269 -28374990 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1532 340 300 32 32 chr5 124162289 124162382 -28374877 + PB1D7 SINE Alu 26 118 -2 5 1532 1403 100 5 0 chr5 124162642 124162832 -28374427 + B2_Mm1a SINE B2 3 193 0 5 1532 603 117 0 0 chr5 124162832 124162926 -28374333 + (GGAA)n Simple_repeat Simple_repeat 1 94 0 5 1532 364 205 34 67 chr5 124162929 124163018 -28374241 - PB1D9 SINE Alu -32 88 3 5 1532 572 295 74 45 chr5 124163048 124163250 -28374009 - B3A SINE B2 0 216 9 5 1532 227 277 0 0 chr5 124163301 124163348 -28373911 - ID4_ SINE ID -33 50 4 5 1532 235 260 63 0 chr5 124163348 124163416 -28373843 - B1F SINE Alu -39 78 1 5 1532 250 162 0 0 chr5 124165033 124165091 -28372168 - B1_Mus2 SINE Alu -1 146 89 5 1532 362 219 208 16 chr5 124165132 124165257 -28372002 + B1F2 SINE Alu 1 149 0 5 1532 1504 22 62 0 chr5 124165441 124165619 -28371640 + B2_Mm1a SINE B2 2 190 -3 5 1532 647 263 7 19 chr5 124166412 124166567 -28370692 + RSINE1 SINE B4 11 163 -2 5 1532 637 67 14 5 chr5 124166579 124166691 -28370568 + L1_Mus2 LINE L1 6470 6581 -3 5 1532 535 250 17 17 chr5 124166786 124166904 -28370355 + B3 SINE B2 89 206 -10 5 1532 291 310 80 0 chr5 124167153 124167253 -28370006 - PB1D9 SINE Alu -6 114 7 5 1532 442 268 192 26 chr5 124167452 124167686 -28369573 - B4A SINE B4 -18 274 2 5 1532 397 237 128 15 chr5 124167714 124167847 -28369412 - B1_Mur2 SINE Alu 0 149 2 5 1532 285 220 160 57 chr5 124168081 124168187 -28369072 + ID_B1 SINE B4 97 213 -11 5 1532 398 297 36 0 chr5 124168247 124168358 -28368901 + B1F SINE Alu 1 115 -5 5 1532 486 209 54 101 chr5 124168446 124168595 -28368664 + B1_Mus1 SINE Alu 7 148 0 5 1532 476 231 25 8 chr5 124168768 124168886 -28368373 + ID_B1 SINE B4 105 224 0 5 1532 23 0 0 0 chr5 124168938 124168961 -28368298 + AT_rich Low_complexity Low_complexity 1 23 0 5 1532 393 323 53 15 chr5 124168965 124169097 -28368162 + B1F SINE Alu 7 143 -6 5 1532 278 250 67 33 chr5 124169868 124169988 -28367271 + L1ME2z LINE L1 6310 6433 -11 5 1532 183 114 0 0 chr5 124170808 124170843 -28366416 + (TCG)n Simple_repeat Simple_repeat 2 36 0 5 1532 459 48 0 0 chr5 124171671 124171733 -28365526 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1532 834 184 132 161 chr5 124171736 124172145 -28365114 - RLTR21 LTR ERVK -492 1080 684 5 1532 185 65 32 0 chr5 124172145 124172176 -28365083 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1532 236 171 0 0 chr5 124172190 124172231 -28365028 - B1_Mus2 SINE Alu -12 135 95 5 1532 585 164 73 0 chr5 124172231 124172341 -28364918 - B1_Mus1 SINE Alu -25 123 6 5 1532 2146 229 95 58 chr5 124172341 124172628 -28364631 - RLTR21 LTR ERVK -908 664 390 5 1532 1003 167 200 0 chr5 124172628 124172808 -28364451 - B3 SINE B2 0 216 1 5 1532 2146 229 95 58 chr5 124172808 124173145 -28364114 - RLTR21 LTR ERVK -1183 389 17 5 1532 1450 81 43 0 chr5 124173145 124173331 -28363928 - B2_Mm2 SINE B2 -1 194 1 5 1532 259 317 0 0 chr5 124173476 124173558 -28363701 + A-rich Low_complexity Low_complexity 1 82 0 5 1532 1469 75 37 5 chr5 124173644 124173832 -28363427 + B2_Mm2 SINE B2 1 194 -1 5 1532 333 47 0 0 chr5 124173833 124173876 -28363383 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 5 1532 1214 48 14 0 chr5 124174077 124174222 -28363037 + B1_Mm SINE Alu 1 147 0 5 1532 2843 60 84 3 chr5 124174419 124174789 -28362470 - MTB LTR MaLR 0 400 1 5 1532 756 136 0 64 chr5 124174789 124174928 -28362331 - MTB-int LTR MaLR 0 1098 968 5 1532 1378 97 11 21 chr5 124174928 124175117 -28362142 - B2_Mm1t SINE B2 -6 187 1 5 1532 756 136 0 64 chr5 124175117 124175150 -28362109 - MTB-int LTR MaLR -131 967 937 5 1532 844 79 21 14 chr5 124175608 124175749 -28361510 - MTB-int LTR MaLR -135 963 822 5 1532 1150 152 38 67 chr5 124175741 124175766 -28361493 - RMER6B LTR ERVK -224 237 218 5 1532 1287 70 0 0 chr5 124175766 124175937 -28361322 + (TTC)n Simple_repeat Simple_repeat 1 171 0 5 1532 1186 44 0 14 chr5 124175937 124176075 -28361184 - B1_Mus1 SINE Alu -12 136 1 5 1532 1150 152 38 67 chr5 124176075 124176287 -28360972 - RMER6B LTR ERVK -244 217 7 5 1532 1924 140 220 48 chr5 124176469 124176651 -28360608 + RMER6A LTR ERVK 150 344 -412 5 1532 1021 88 88 0 chr5 124176651 124176787 -28360472 - B1_Mus1 SINE Alu 0 148 1 5 1532 1924 140 220 48 chr5 124176787 124177122 -28360137 + RMER6A LTR ERVK 345 756 0 5 1532 248 161 106 61 chr5 124177855 124177921 -28359338 - B1F SINE Alu -58 91 23 5 1532 405 141 139 12 chr5 124177956 124178042 -28359217 - B1_Mm SINE Alu -7 140 44 5 1532 337 262 123 4 chr5 124178238 124178352 -28358907 - PB1D7 SINE Alu -20 130 13 5 1532 291 296 28 0 chr5 124179440 124179511 -28357748 - B3 SINE B2 -99 117 45 5 1532 1131 72 0 0 chr5 124179572 124179711 -28357548 - B1_Mus1 SINE Alu -9 139 1 5 1532 587 205 79 57 chr5 124180098 124180238 -28357021 - B1_Mur3 SINE Alu -5 144 2 5 1532 215 245 61 0 chr5 124180251 124180300 -28356959 - B1F1 SINE Alu -10 139 88 5 1532 300 282 58 0 chr5 124180738 124180841 -28356418 - PB1D7 SINE Alu -11 109 1 5 1532 848 232 31 52 chr5 124181640 124181831 -28355428 - B3 SINE B2 -28 188 2 5 1532 239 283 0 16 chr5 124181828 124181889 -28355370 - ID_B1 SINE B4 0 224 165 5 1532 660 71 306 0 chr5 124181965 124182063 -28355196 + B1_Mus1 SINE Alu 5 132 -16 5 1532 1160 76 14 0 chr5 124182278 124182422 -28354837 - B1_Mm SINE Alu 0 147 2 5 1532 315 351 97 39 chr5 124182456 124182610 -28354649 + RSINE1 SINE B4 3 165 0 5 1532 287 248 61 52 chr5 124182669 124182784 -28354475 + PB1D10 SINE Alu 1 116 -1 5 1532 1256 114 11 6 chr5 124182788 124182965 -28354294 + B2_Mm1t SINE B2 2 179 -14 5 1532 320 185 0 0 chr5 124182998 124183052 -28354207 + B2_Mm2 SINE B2 48 101 -94 5 1532 382 227 0 64 chr5 124183176 124183270 -28353989 - B1_Mm SINE Alu -50 97 10 5 1532 360 105 278 44 chr5 124183363 124183453 -28353806 - PB1D9 SINE Alu 0 120 10 5 1532 639 133 46 77 chr5 124183951 124184081 -28353178 - B1_Mur3 SINE Alu -13 136 11 5 1532 244 286 83 28 chr5 124184237 124184345 -28352914 + ID_B1 SINE B4 78 191 -33 5 1532 351 209 250 18 chr5 124184250 124184362 -28352897 + B1_Mur3 SINE Alu 11 149 -1 5 1532 270 283 168 0 chr5 124184884 124184997 -28352262 - ID_B1 SINE B4 0 224 93 5 1532 484 281 7 67 chr5 124185218 124185367 -28351892 - B1_Mur2 SINE Alu -1 148 9 5 1532 265 367 6 109 chr5 124185227 124185392 -28351867 - B4 SINE B4 -73 219 72 5 1532 306 233 114 23 chr5 124185464 124185552 -28351707 - ID_B1 SINE B4 0 224 129 5 1532 22 35 0 0 chr5 124186296 124186325 -28350934 + AT_rich Low_complexity Low_complexity 1 29 0 5 1532 260 200 225 0 chr5 124186704 124186784 -28350475 - B2_Mm2 SINE B2 -97 98 1 5 1532 1163 95 0 20 chr5 124187121 124187271 -28349988 + B1_Mus2 SINE Alu 1 147 0 5 1532 256 267 0 16 chr5 124187329 124187390 -28349869 + B3A SINE B2 83 142 -56 5 1532 1277 201 199 100 chr5 124187394 124187815 -28349444 + RLTR18B LTR ERVK 1 463 -49 5 1532 531 181 97 0 chr5 124187850 124187994 -28349265 + Lx9 LINE L1 7480 7637 -7 5 1532 1236 126 49 0 chr5 124188001 124188184 -28349075 + B2_Mm2 SINE B2 1 192 -3 5 1532 313 301 17 58 chr5 124188203 124188323 -28348936 + B1_Mur2 SINE Alu 27 141 -8 5 1532 380 269 108 27 chr5 124188493 124188604 -28348655 + B4A SINE B4 9 128 -164 5 1532 449 255 103 19 chr5 124188737 124188893 -28348366 + B3 SINE B2 48 216 0 5 1532 1038 90 6 70 chr5 124188919 124189075 -28348184 + B1_Mus2 SINE Alu 2 147 0 5 1532 262 236 0 0 chr5 124189744 124189799 -28347460 - PB1D10 SINE Alu -15 102 48 5 1532 1286 41 0 13 chr5 124189985 124190134 -28347125 - B1_Mus1 SINE Alu 0 148 2 5 1532 262 344 78 0 chr5 124190145 124190235 -28347024 + B1_Mus1 SINE Alu 39 135 -13 5 1532 872 157 42 21 chr5 124191215 124191358 -28345901 + B1_Mur3 SINE Alu 1 146 -3 5 1532 183 62 0 94 chr5 124191369 124191422 -28345837 + A-rich Low_complexity Low_complexity 2 49 0 5 1532 189 0 0 0 chr5 124191447 124191468 -28345791 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1532 332 312 0 22 chr5 124191472 124191573 -28345686 + ID4 SINE ID 8 103 -49 5 1532 22 43 0 21 chr5 124191937 124191953 -28345306 + AT_rich Low_complexity Low_complexity 1 16 0 5 1532 1291 34 0 13 chr5 124191953 124192102 -28345157 - B1_Mus2 SINE Alu 0 147 1 5 1532 22 43 0 21 chr5 124192102 124192132 -28345127 + AT_rich Low_complexity Low_complexity 1 30 0 5 1532 442 214 86 64 chr5 124193877 124194017 -28343242 - RSINE1 SINE B4 -12 153 11 5 1532 241 200 0 39 chr5 124194262 124194314 -28342945 - ID_B1 SINE B4 0 224 175 5 1532 495 279 57 0 chr5 124194565 124194705 -28342554 - B1F1 SINE Alu -1 148 1 5 1532 415 215 12 25 chr5 124195659 124195740 -28341519 - ID2 SINE ID 0 83 4 5 1532 588 171 124 0 chr5 124196547 124196652 -28340607 - B1_Mur1 SINE Alu -10 139 22 5 1532 294 180 113 16 chr5 124196601 124196663 -28340596 - MT2B LTR ERVL -361 240 173 5 1532 1304 48 0 0 chr5 124197976 124198122 -28339137 - B1_Mus2 SINE Alu 0 147 2 5 1532 487 128 47 0 chr5 124198537 124198623 -28338636 + B1_Mus2 SINE Alu 58 147 0 5 1532 1192 49 0 34 chr5 124200131 124200280 -28336979 + B1_Mus1 SINE Alu 5 148 0 5 1532 435 178 16 20 chr5 124200423 124200560 -28336699 - B1_Mus2 SINE Alu -15 134 18 5 1532 355 272 8 66 chr5 124200686 124200808 -28336451 + PB1D10 SINE Alu 1 115 -2 5 1532 621 211 52 15 chr5 124200846 124200981 -28336278 + B1_Mus1 SINE Alu 1 140 -8 5 1532 181 233 217 0 chr5 124201028 124201088 -28336171 + L3 LINE CR1 4404 4476 -13 6 1532 21 0 0 0 chr5 124201258 124201279 -28335980 + AT_rich Low_complexity Low_complexity 1 21 0 6 1532 708 159 132 9 chr5 124201286 124201400 -28335859 - B1_Mur3 SINE Alu -18 131 4 6 1532 233 240 83 107 chr5 124201403 124201487 -28335772 - RSINE1 SINE B4 -81 84 3 6 1532 1057 152 197 0 chr5 124201514 124201692 -28335567 + B3 SINE B2 1 213 -3 6 1532 806 84 17 8 chr5 124201700 124201820 -28335439 - RLTR9A LTR ERVK 0 368 248 6 1532 345 313 112 9 chr5 124201859 124201975 -28335284 - ID_B1 SINE B4 -67 157 30 6 1532 524 221 46 73 chr5 124201987 124202138 -28335121 - B1_Mur1 SINE Alu -1 148 2 6 1532 346 242 22 11 chr5 124202144 124202236 -28335023 - ID_B1 SINE B4 -8 216 124 6 1532 600 230 135 12 chr5 124202338 124202501 -28334758 - B3A SINE B2 -5 193 11 6 1532 234 0 0 0 chr5 124202767 124202793 -28334466 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1532 786 233 0 0 chr5 124202793 124202926 -28334333 - B1_Mur3 SINE Alu -11 138 6 6 1532 580 214 280 0 chr5 124202935 124203103 -28334156 - ID_B1 SINE B4 -9 215 1 6 1532 214 205 0 0 chr5 124203118 124203157 -28334102 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 6 1532 22 0 0 0 chr5 124203281 124203303 -28333956 + AT_rich Low_complexity Low_complexity 1 22 0 6 1532 222 116 0 0 chr5 124203303 124203346 -28333913 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1532 628 145 17 52 chr5 124203346 124203462 -28333797 - PB1D9 SINE Alu 0 120 9 6 1532 395 264 33 85 chr5 124204156 124204309 -28332950 + B1F SINE Alu 5 149 0 6 1532 683 241 59 86 chr5 124204478 124204939 -28332320 + RLTR20B3 LTR ERVK 1 534 -43 6 1532 1095 115 0 0 chr5 124205139 124205287 -28331972 + B1_Mus1 SINE Alu 1 148 0 6 1532 207 139 0 0 chr5 124205306 124205342 -28331917 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 6 1532 775 81 10 6 chr5 124205867 124205984 -28331275 - B1_Mus2 SINE Alu 0 147 1 6 1532 627 123 3 15 chr5 124206043 124206157 -28331102 + B1_Mus1 SINE Alu 9 114 -6 6 1532 380 239 110 0 chr5 124206528 124206637 -28330622 + B1F SINE Alu 24 144 -5 6 1532 701 147 311 6 chr5 124206647 124206811 -28330448 + B3 SINE B2 2 215 -1 6 1532 1322 35 0 0 chr5 124206812 124206957 -28330302 + B1_Mm SINE Alu 2 146 -1 6 1532 207 0 0 0 chr5 124206966 124206989 -28330270 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 6 1532 586 84 37 56 chr5 124207019 124207130 -28330129 - B1_Mur3 SINE Alu 0 148 32 6 1532 1118 89 0 40 chr5 124207168 124207320 -28329939 - B1_Mus2 SINE Alu 0 147 2 6 1532 210 265 103 0 chr5 124207467 124207535 -28329724 - PB1D10 SINE Alu 0 117 43 6 1532 732 142 0 0 chr5 124207531 124207644 -28329615 + B1_Mus2 SINE Alu 21 133 -14 6 1532 222 62 0 0 chr5 124207993 124208025 -28329234 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 6 1532 643 177 270 17 chr5 124208154 124208332 -28328927 + URR1A DNA MER1_type 4 226 0 6 1532 252 86 0 0 chr5 124208544 124208579 -28328680 + (T)n Simple_repeat Simple_repeat 1 35 0 6 1532 267 200 143 0 chr5 124208732 124208802 -28328457 - B1_Mus1 SINE Alu -38 110 31 6 1532 262 333 123 0 chr5 124208825 124208939 -28328320 - RSINE1 SINE B4 -37 128 1 6 1532 370 288 0 0 chr5 124209342 124209415 -28327844 - ID4 SINE ID -2 81 9 6 1532 622 267 109 38 chr5 124209416 124209626 -28327633 + B4A SINE B4 56 280 -12 6 1532 558 172 103 32 chr5 124209857 124209983 -28327276 + B1_Mur2 SINE Alu 12 146 -3 6 1532 24 67 0 0 chr5 124210562 124210607 -28326652 + AT_rich Low_complexity Low_complexity 1 45 0 6 1532 369 0 0 0 chr5 124210734 124210775 -28326484 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 6 1532 700 262 42 32 chr5 124210840 124211029 -28326230 + B3A SINE B2 3 193 -5 6 1532 215 184 0 0 chr5 124211030 124211068 -28326191 + B4A SINE B4 85 122 -170 6 1532 549 173 29 0 chr5 124211237 124211341 -28325918 - PB1D9 SINE Alu 0 120 14 6 1532 289 256 11 85 chr5 124211543 124211637 -28325622 - ID_B1 SINE B4 -50 174 88 6 1532 235 254 0 113 chr5 124211580 124211651 -28325608 - B1_Mur4 SINE Alu -86 64 2 6 1532 1002 73 0 0 chr5 124211828 124211964 -28325295 + (TG)n Simple_repeat Simple_repeat 1 136 0 6 1532 611 273 40 85 chr5 124211964 124212129 -28325130 - B3A SINE B2 -36 159 1 6 1532 245 207 51 127 chr5 124212190 124212306 -28324953 + PB1D10 SINE Alu 10 127 0 6 1532 241 219 122 103 chr5 124212589 124212696 -28324563 - RLTR25A LTR ERVK -453 650 542 6 1532 412 136 30 0 chr5 124212644 124212710 -28324549 - ID_B1 SINE B4 -25 199 132 6 1532 280 200 33 0 chr5 124212784 124212844 -28324415 - B3A SINE B2 -116 82 21 6 1532 477 205 50 33 chr5 124212850 124212971 -28324288 - RSINE1 SINE B4 -37 128 6 6 1532 397 312 48 0 chr5 124213050 124213175 -28324084 - RSINE1 SINE B4 -31 134 4 6 1532 332 288 119 0 chr5 124213194 124213312 -28323947 - B1F SINE Alu -6 143 12 6 1532 1449 70 16 0 chr5 124213423 124213608 -28323651 - B2_Mm1t SINE B2 -4 189 2 6 1532 1402 69 23 0 chr5 124214552 124214726 -28322533 + B2_Mm1a SINE B2 2 179 -14 6 1532 297 109 0 0 chr5 124214726 124214781 -28322478 + (T)n Simple_repeat Simple_repeat 1 55 0 6 1532 1292 54 0 0 chr5 124214781 124214929 -28322330 - B1_Mus1 SINE Alu 0 148 1 6 1532 556 97 193 55 chr5 124215260 124215369 -28321890 + B1_Mur4 SINE Alu 27 150 0 6 1532 551 228 8 34 chr5 124215388 124215506 -28321753 + PB1D10 SINE Alu 1 115 -2 6 1532 249 232 14 28 chr5 124215565 124215636 -28321623 + GA-rich Low_complexity Low_complexity 3 72 0 6 1532 1247 42 21 0 chr5 124216337 124216481 -28320778 - B1_Mus1 SINE Alu 0 148 2 6 1532 257 131 0 16 chr5 124218007 124218069 -28319190 + (TTTG)n Simple_repeat Simple_repeat 4 64 0 6 1532 1051 39 0 0 chr5 124218069 124218198 -28319061 - B1_Mus1 SINE Alu -5 143 15 6 1532 418 233 76 83 chr5 124218070 124218215 -28319044 - B4A SINE B4 -71 221 78 6 1532 562 242 25 0 chr5 124218544 124218664 -28318595 + B3 SINE B2 1 123 -93 6 1532 309 274 82 82 chr5 124218679 124218826 -28318433 + B1_Mur2 SINE Alu 4 150 0 6 1532 395 275 141 22 chr5 124218960 124219209 -28318050 - L1MA7 LINE L1 -187 6002 5721 6 1532 499 246 38 8 chr5 124219330 124219461 -28317798 - B1_Mur1 SINE Alu -1 148 14 6 1532 1378 52 109 6 chr5 124220067 124220242 -28317017 - B2_Mm2 SINE B2 -1 194 2 6 1532 482 211 53 0 chr5 124220383 124220478 -28316781 - B1_Mur4 SINE Alu -50 100 1 6 1532 307 262 25 93 chr5 124220478 124220501 -28316758 - MT2B LTR ERVL -349 252 143 6 1532 22 0 0 30 chr5 124220515 124220530 -28316729 + AT_rich Low_complexity Low_complexity 1 15 0 6 1532 739 224 7 20 chr5 124220530 124220680 -28316579 - B1_Mur1 SINE Alu 0 149 2 6 1532 22 0 0 30 chr5 124220680 124220697 -28316562 + AT_rich Low_complexity Low_complexity 1 17 0 6 1532 274 212 110 24 chr5 124220751 124220833 -28316426 - B3 SINE B2 -101 94 6 6 1532 341 371 21 14 chr5 124221420 124221565 -28315694 + RSINE1 SINE B4 3 148 -17 6 1532 702 44 0 0 chr5 124221799 124221889 -28315370 + (TG)n Simple_repeat Simple_repeat 1 90 0 6 1532 460 304 66 7 chr5 124221900 124222036 -28315223 - RSINE1 SINE B4 -5 160 17 6 1532 1074 153 21 10 chr5 124222678 124222870 -28314389 - B2_Mm2 SINE B2 0 195 2 6 1532 868 140 43 114 chr5 124222909 124223119 -28314140 - B2_Mm2 SINE B2 0 195 1 6 1532 359 258 147 61 chr5 124223141 124223339 -28313920 - ID_B1 SINE B4 0 224 10 6 1532 622 233 0 32 chr5 124223216 124223340 -28313919 - B3 SINE B2 -86 130 11 6 1532 501 316 31 0 chr5 124223473 124223666 -28313593 + B3 SINE B2 5 203 -13 6 1532 534 241 27 0 chr5 124223724 124223836 -28313423 + RSINE1 SINE B4 29 143 -22 6 1532 204 91 61 0 chr5 124224078 124224111 -28313148 + CT-rich Low_complexity Low_complexity 2 36 0 6 1532 938 147 97 43 chr5 124224113 124224298 -28312961 - B2_Mm2 SINE B2 0 195 1 6 1532 991 117 0 33 chr5 124224535 124224685 -28312574 - B1_Mus1 SINE Alu -1 147 3 6 1532 1207 55 0 0 chr5 124224711 124224857 -28312402 - B1_Mus2 SINE Alu 0 147 2 6 1532 337 167 17 0 chr5 124224997 124225057 -28312202 + PB1 SINE Alu 42 102 -25 6 1532 715 136 8 33 chr5 124225368 124225490 -28311769 + PB1D9 SINE Alu 2 120 0 6 1532 476 261 104 0 chr5 124225948 124226082 -28311177 + B1_Mur1 SINE Alu 1 148 -1 6 1532 512 236 127 0 chr5 124226177 124226287 -28310972 + B3 SINE B2 2 125 -91 6 1532 259 284 68 0 chr5 124226975 124227049 -28310210 + ID4 SINE ID 2 80 -3 6 1532 402 21 0 0 chr5 124227127 124227174 -28310085 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 6 1532 537 58 0 0 chr5 124227181 124227250 -28310009 + (TC)n Simple_repeat Simple_repeat 1 69 0 6 1532 585 224 0 0 chr5 124227250 124227357 -28309902 - B1_Mus1 SINE Alu -40 108 2 6 1532 728 288 81 0 chr5 124227584 124227782 -28309477 + ID_B1 SINE B4 11 224 0 6 1532 450 127 0 0 chr5 124227787 124227858 -28309401 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1532 534 277 19 0 chr5 124228433 124228592 -28308667 - RSINE1 SINE B4 -2 163 2 7 1532 288 341 10 90 chr5 124228733 124228833 -28308426 + PB1 SINE Alu 29 120 -7 7 1532 585 204 71 0 chr5 124229051 124229164 -28308095 - B1_Mur2 SINE Alu -27 122 2 7 1532 417 39 0 0 chr5 124229250 124229301 -28307958 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1532 401 300 82 57 chr5 124229312 124229471 -28307788 - RSINE1 SINE B4 0 165 3 7 1532 442 127 245 38 chr5 124229494 124229600 -28307659 - B1_Mur3 SINE Alu -21 128 1 7 1532 386 219 191 7 chr5 124230178 124230325 -28306934 + Lx8 LINE L1 7298 7471 -2 7 1532 366 330 49 83 chr5 124230472 124230559 -28306700 - ID_B1 SINE B4 0 224 143 7 1532 665 206 141 31 chr5 124230559 124230750 -28306509 - B3 SINE B2 0 216 5 7 1532 366 330 49 83 chr5 124230750 124230867 -28306392 - ID_B1 SINE B4 -82 142 27 7 1532 383 357 21 7 chr5 124231355 124231499 -28305760 - RSINE1 SINE B4 0 165 20 7 1532 211 128 0 25 chr5 124231525 124231565 -28305694 + T-rich Low_complexity Low_complexity 5 43 0 7 1532 210 333 0 0 chr5 124232091 124232142 -28305117 - ID SINE ID -135 89 39 7 1532 230 353 15 0 chr5 124232097 124232165 -28305094 - ID4_ SINE ID 0 83 15 7 1532 247 333 0 15 chr5 124232104 124232171 -28305088 - tRNA-Ala-GCY_ tRNA tRNA -6 69 4 7 1532 321 259 78 17 chr5 124232312 124232442 -28304817 - B1F SINE Alu 0 149 6 7 1532 778 145 16 104 chr5 124232474 124232666 -28304593 - B2_Mm2 SINE B2 -19 176 2 7 1532 347 152 0 70 chr5 124233144 124233220 -28304039 + B1F SINE Alu 43 137 -12 7 1532 189 182 0 0 chr5 124233223 124233278 -28303981 + (TCTCTG)n Simple_repeat Simple_repeat 4 58 0 7 1532 213 250 123 14 chr5 124234047 124234120 -28303139 - ID4 SINE ID -1 82 2 7 1532 21 0 0 0 chr5 124234335 124234356 -28302903 + AT_rich Low_complexity Low_complexity 1 21 0 7 1532 682 213 52 31 chr5 124234562 124234756 -28302503 - B3A SINE B2 0 198 1 7 1532 382 252 201 29 chr5 124234855 124234994 -28302265 + RSINE1 SINE B4 3 165 0 7 1532 293 310 10 39 chr5 124235068 124235172 -28302087 - MLT1A1 LTR MaLR -40 368 268 7 1532 311 308 95 13 chr5 124235638 124235796 -28301463 - L1MB4 LINE L1 -6 6174 6004 7 1532 232 316 0 0 chr5 124235821 124235878 -28301381 + MER20 DNA MER1_type 157 213 -6 7 1532 948 32 177 0 chr5 124236630 124236754 -28300505 + B1_Mus2 SINE Alu 2 147 0 7 1532 312 290 29 20 chr5 124237201 124237303 -28299956 + PB1D10 SINE Alu 1 103 -14 7 1532 1199 55 0 7 chr5 124237785 124237932 -28299327 + B1_Mus2 SINE Alu 1 146 -1 7 1532 1391 147 60 82 chr5 124237996 124238314 -28298945 - RMER4B LTR ERVK -274 311 1 7 1532 311 316 67 67 chr5 124238518 124238667 -28298592 - MER2 DNA MER2_type -2 343 195 7 1532 370 260 199 0 chr5 124238764 124238910 -28298349 + B3A SINE B2 14 188 -10 7 1532 1142 214 115 12 chr5 124239394 124239715 -28297544 - ORR1E LTR MaLR -1 358 5 7 1532 236 256 77 0 chr5 124239877 124239974 -28297285 - B1F SINE Alu -5 112 1 7 1532 261 0 0 0 chr5 124240451 124240480 -28296779 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1532 566 208 66 76 chr5 124240661 124240859 -28296400 + B3A SINE B2 2 197 -1 7 1532 216 0 0 0 chr5 124241332 124241356 -28295903 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 7 1532 367 147 25 0 chr5 124241385 124241460 -28295799 - B1_Mur4 SINE Alu -2 118 37 7 1532 231 36 0 0 chr5 124241894 124241922 -28295337 + (TTA)n Simple_repeat Simple_repeat 1 28 0 7 1532 436 246 66 58 chr5 124241929 124242050 -28295209 - ID_B1 SINE B4 -9 215 94 7 1532 471 169 419 0 chr5 124242283 124242431 -28294828 + URR1A DNA MER1_type 2 211 -15 7 1532 235 220 122 108 chr5 124242605 124242753 -28294506 - RLTR25B LTR ERVK -674 354 205 7 1532 841 204 0 7 chr5 124242641 124242784 -28294475 - B1_Mur4 SINE Alu -7 143 2 7 1532 308 329 117 50 chr5 124242987 124243166 -28294093 + MER58A DNA MER1_type 4 194 -30 7 1532 1010 256 14 0 chr5 124243184 124243395 -28293864 + B3 SINE B2 1 214 -2 7 1532 684 175 119 0 chr5 124244487 124244613 -28292646 + B1_Mus2 SINE Alu 1 141 -6 7 1532 323 330 19 83 chr5 124244622 124244827 -28292432 + B4A SINE B4 87 278 -14 7 1532 922 205 23 6 chr5 124245064 124245236 -28292023 + ID_B1 SINE B4 49 223 -1 7 1532 854 243 5 11 chr5 124245269 124245460 -28291799 + B3A SINE B2 4 193 -5 7 1532 532 235 67 52 chr5 124245463 124245656 -28291603 + B3A SINE B2 3 198 0 7 1532 224 0 65 0 chr5 124245929 124245960 -28291299 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 7 1532 334 274 107 0 chr5 124246878 124246962 -28290297 + PB1D10 SINE Alu 18 110 -7 7 1532 285 279 0 0 chr5 124247084 124247152 -28290107 - Tigger7 DNA MER2_type -2238 253 186 7 1532 560 300 31 59 chr5 124247296 124247528 -28289731 - ID_B1 SINE B4 0 224 15 7 1532 556 273 70 0 chr5 124247919 124248047 -28289212 - ID_B1 SINE B4 0 224 88 7 1532 384 40 0 0 chr5 124248062 124248112 -28289147 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1532 346 239 182 51 chr5 124248114 124248251 -28289008 - B3A SINE B2 -41 157 3 7 1532 412 182 192 0 chr5 124248389 124248488 -28288771 - ID_B1 SINE B4 -7 217 100 7 1532 465 244 125 8 chr5 124248545 124248665 -28288594 - RSINE1 SINE B4 -21 144 11 7 1532 243 220 71 35 chr5 124249615 124249700 -28287559 - IAPLTR3 LTR ERVK -59 267 180 7 1532 33 25 0 0 chr5 124249956 124249996 -28287263 + AT_rich Low_complexity Low_complexity 1 40 0 7 1532 652 170 9 0 chr5 124250052 124250164 -28287095 - B1_Mur3 SINE Alu -35 114 2 7 1532 456 276 16 24 chr5 124250164 124250178 -28287081 - ID_B1 SINE B4 -31 193 69 7 1532 946 94 33 116 chr5 124250202 124250383 -28286876 + B2_Mm2 SINE B2 1 166 -29 7 1532 339 263 0 13 chr5 124250628 124250705 -28286554 - B4 SINE B4 -209 83 8 7 1532 320 176 15 0 chr5 124250705 124250773 -28286486 + CT-rich Low_complexity Low_complexity 4 72 0 7 1532 654 117 153 0 chr5 124250782 124250893 -28286366 - B1_Mur4 SINE Alu -1 149 22 7 1532 511 271 20 79 chr5 124250906 124250984 -28286275 - ID_B1 SINE B4 0 224 147 7 1532 1492 68 11 5 chr5 124250984 124251175 -28286084 - B2_Mm2 SINE B2 -2 193 2 7 1532 511 271 20 79 chr5 124251175 124251248 -28286011 - ID_B1 SINE B4 -78 146 82 7 1532 381 43 0 0 chr5 124251540 124251587 -28285672 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1532 417 192 140 28 chr5 124251598 124251705 -28285554 - RSINE1 SINE B4 -16 149 31 7 1532 188 190 23 23 chr5 124253576 124253619 -28283640 - L3 LINE CR1 -2798 1691 1649 7 1532 327 303 106 29 chr5 124254212 124254382 -28282877 - L1MC4 LINE L1 -89 7953 7771 7 1532 317 315 11 21 chr5 124254382 124254476 -28282783 + PB1D7 SINE Alu 27 119 -1 7 1532 899 126 7 20 chr5 124254525 124254671 -28282588 - B1_Mur3 SINE Alu -1 148 5 7 1532 471 296 0 0 chr5 124254776 124254891 -28282368 + PB1D9 SINE Alu 1 115 -5 7 1532 244 340 53 0 chr5 124255758 124255852 -28281407 - PB1 SINE Alu -3 124 26 7 1532 224 238 0 0 chr5 124255936 124255978 -28281281 - ID4_ SINE ID -40 43 2 7 1532 448 274 38 0 chr5 124256016 124256122 -28281137 - RSINE1 SINE B4 -55 110 1 7 191 423 299 112 15 chr5 124256190 124256387 -28280872 - ID_B1 SINE B4 -8 216 1 7 1533 225 200 80 0 chr5 124256582 124256632 -28280627 + ID4 SINE ID 5 58 -25 7 1533 912 261 0 45 chr5 124256938 124257159 -28280100 - B3 SINE B2 -5 211 1 7 1533 298 289 71 20 chr5 124258091 124258190 -28279069 - PB1D10 SINE Alu -16 104 1 7 1533 354 214 36 80 chr5 124258206 124258318 -28278941 - PB1D9 SINE Alu -13 107 1 7 1533 784 184 0 14 chr5 124258725 124258863 -28278396 + B3 SINE B2 81 216 0 7 1533 198 103 0 0 chr5 124259609 124259638 -28277621 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1533 377 263 15 106 chr5 124259638 124259770 -28277489 - PB1D7 SINE Alu 0 120 1 7 1533 1219 47 0 13 chr5 124259939 124260089 -28277170 - B1_Mus1 SINE Alu 0 148 1 7 1533 1109 59 0 0 chr5 124260309 124260445 -28276814 + B1_Mus2 SINE Alu 4 139 -8 7 1533 247 271 129 0 chr5 124260541 124260611 -28276648 - Charlie1a DNA MER1_type -1249 206 128 7 1533 330 132 0 0 chr5 124261806 124261859 -28275400 + (TTA)n Simple_repeat Simple_repeat 2 54 0 7 1533 637 254 109 5 chr5 124262252 124262454 -28274805 + ID_B1 SINE B4 1 223 -1 7 1533 290 218 171 11 chr5 124262463 124262551 -28274708 + PB1D7 SINE Alu 12 113 -7 7 1533 678 238 13 13 chr5 124263062 124263215 -28274044 + RSINE1 SINE B4 2 154 -11 7 1533 452 239 91 54 chr5 124263393 124263579 -28273680 - B3A SINE B2 -2 196 4 7 1533 257 321 9 18 chr5 124263666 124263777 -28273482 - L1MB7 LINE L1 -49 6135 6026 7 1533 189 0 0 0 chr5 124264105 124264126 -28273133 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 7 1533 1151 56 7 0 chr5 124264131 124264274 -28272985 - B1_Mus1 SINE Alu 0 148 5 7 1533 330 296 23 181 chr5 124264290 124264383 -28272876 - MER2 DNA MER2_type -66 279 217 7 1533 524 321 13 0 chr5 124264383 124264542 -28272717 - RSINE1 SINE B4 0 165 5 7 1533 330 296 23 181 chr5 124264542 124264625 -28272634 - MER2 DNA MER2_type -129 216 131 7 1533 353 223 138 0 chr5 124264825 124264919 -28272340 - PB1D10 SINE Alu -10 107 1 7 1533 645 173 93 0 chr5 124265166 124265295 -28271964 - ID_B1 SINE B4 -3 221 85 8 1533 305 282 0 45 chr5 124265420 124265509 -28271750 - ID_B1 SINE B4 -70 154 70 8 1533 1367 79 26 11 chr5 124265592 124265783 -28271476 - B2_Mm2 SINE B2 0 195 2 8 1533 372 269 215 13 chr5 124265907 124266065 -28271194 + Tigger7 DNA MER2_type 2302 2491 0 8 1533 865 121 30 0 chr5 124266272 124266404 -28270855 - B1_Mm SINE Alu -11 136 1 8 1533 283 265 9 61 chr5 124267074 124267205 -28270054 + B1_Mus2 SINE Alu 1 120 0 8 1533 328 40 20 20 chr5 124267399 124267450 -28269809 + (GTTTG)n Simple_repeat Simple_repeat 2 52 0 8 1533 288 0 0 0 chr5 124267457 124267489 -28269770 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 8 1533 409 59 57 29 chr5 124267489 124267544 -28269715 - B1_Mus2 SINE Alu -8 139 81 8 1533 298 239 264 63 chr5 124267544 124267605 -28269654 + B3 SINE B2 1 182 -34 8 1533 586 143 0 0 chr5 124267605 124267696 -28269563 - B1_Mur4 SINE Alu -59 91 1 8 1533 370 186 0 148 chr5 124267610 124267711 -28269548 - MT2B LTR ERVL -361 240 155 8 1533 445 278 181 5 chr5 124268174 124268362 -28268897 - ID_B1 SINE B4 -3 221 1 8 1533 357 257 0 0 chr5 124268648 124268722 -28268537 + ID4 SINE ID 3 76 -7 8 1533 1244 109 6 0 chr5 124270027 124270202 -28267057 - B2_Mm2 SINE B2 -18 177 2 8 1533 706 175 14 27 chr5 124270209 124270356 -28266903 - B1_Mur2 SINE Alu 0 149 5 8 1533 241 314 58 25 chr5 124270473 124270594 -28266665 - MIR3 SINE MIR -75 133 9 8 1533 357 43 0 0 chr5 124271245 124271292 -28265967 + (TC)n Simple_repeat Simple_repeat 1 47 0 8 1533 261 0 0 0 chr5 124271292 124271320 -28265939 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1533 755 190 14 0 chr5 124271678 124271820 -28265439 - B1_Mus1 SINE Alu -1 147 4 8 1533 556 258 79 75 chr5 124271900 124271943 -28265316 + B3 SINE B2 1 41 -175 8 1533 1218 82 66 6 chr5 124271943 124272126 -28265133 + B2_Mm2 SINE B2 2 195 0 8 1533 556 258 79 75 chr5 124272126 124272258 -28265001 + B3 SINE B2 42 177 -39 8 1533 297 75 0 0 chr5 124272258 124272298 -28264961 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1533 556 258 79 75 chr5 124272298 124272335 -28264924 + B3 SINE B2 178 214 -2 8 1533 312 246 14 0 chr5 124272411 124272480 -28264779 + B4A SINE B4 6 75 -217 8 1533 491 291 12 68 chr5 124272497 124272659 -28264600 + B4A SINE B4 136 288 -4 8 1533 466 222 44 68 chr5 124272684 124272891 -28264368 - RMER4B LTR ERVK -4 581 343 8 1533 601 168 101 7 chr5 124272911 124273049 -28264210 - RMER4B LTR ERVK -388 197 47 8 1533 261 0 0 0 chr5 124273310 124273339 -28263920 + (ATATG)n Simple_repeat Simple_repeat 1 29 0 8 1533 487 224 55 16 chr5 124273604 124273731 -28263528 - B1_Mur4 SINE Alu -17 133 2 8 1533 425 258 32 0 chr5 124273875 124273968 -28263291 + RSINE1 SINE B4 1 96 -69 8 1533 241 352 14 0 chr5 124274038 124274050 -28263209 + ID SINE ID 70 82 -142 8 1533 261 309 29 0 chr5 124274050 124274118 -28263141 + B1_Mur2 SINE Alu 1 70 -79 8 1533 787 148 111 0 chr5 124274711 124274846 -28262413 + B1_Mur4 SINE Alu 1 150 0 8 1533 268 312 0 0 chr5 124274867 124274931 -28262328 - PB1D9 SINE Alu -31 89 26 8 1533 282 245 159 62 chr5 124274936 124275049 -28262210 - PB1D10 SINE Alu -25 124 1 8 1533 22 35 0 0 chr5 124275214 124275243 -28262016 + AT_rich Low_complexity Low_complexity 1 29 0 8 1533 616 233 143 12 chr5 124275322 124275483 -28261776 - B3A SINE B2 -16 182 1 8 1533 316 293 131 0 chr5 124275498 124275597 -28261662 - PB1D9 SINE Alu -7 113 2 8 1533 234 314 0 113 chr5 124275515 124275612 -28261647 - MT2B LTR ERVL -361 240 155 8 1533 223 327 0 0 chr5 124275693 124275748 -28261511 - ID_B1 SINE B4 -100 124 70 8 1533 181 319 0 0 chr5 124275772 124275819 -28261440 + MIRb SINE MIR 14 60 -208 8 1533 392 311 49 0 chr5 124276031 124276153 -28261106 - ID_B1 SINE B4 -11 213 86 8 1533 1115 114 34 6 chr5 124276222 124276253 -28261006 - ORR1A2 LTR MaLR -25 302 271 8 1533 310 21 21 21 chr5 124276253 124276301 -28260958 + (TA)n Simple_repeat Simple_repeat 1 48 0 8 1533 1115 124 41 5 chr5 124276301 124276463 -28260796 - ORR1A2 LTR MaLR -62 316 123 8 1533 589 209 0 0 chr5 124276467 124276577 -28260682 + PB1D9 SINE Alu 1 110 -10 8 1533 445 263 116 75 chr5 124276590 124276737 -28260522 - B3A SINE B2 -14 181 27 8 1533 438 139 0 0 chr5 124276901 124276973 -28260286 + (CA)n Simple_repeat Simple_repeat 2 73 0 8 1533 595 211 27 47 chr5 124277256 124277338 -28259921 + ID SINE ID 3 81 -143 8 1533 283 274 11 35 chr5 124277338 124277425 -28259834 + PB1D7 SINE Alu 1 85 -35 8 1533 315 0 0 0 chr5 124277427 124277462 -28259797 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1533 362 311 66 0 chr5 124277466 124277572 -28259687 + RSINE1 SINE B4 25 137 -28 8 1533 23 33 0 0 chr5 124278172 124278202 -28259057 + AT_rich Low_complexity Low_complexity 1 30 0 8 1533 501 294 36 7 chr5 124278206 124278343 -28258916 + B1F2 SINE Alu 9 149 0 8 1533 447 252 146 15 chr5 124278348 124278485 -28258774 + RSINE1 SINE B4 5 159 -6 8 1533 1333 306 63 32 chr5 124278695 124279097 -28258162 + Lx8 LINE L1 6326 6741 -732 8 1533 1521 154 30 129 chr5 124279097 124279462 -28257797 - ORR1A4 LTR MaLR 0 329 1 8 1533 1333 306 63 32 chr5 124279462 124279552 -28257707 + Lx8 LINE L1 6742 6833 -640 8 1533 358 296 95 59 chr5 124279579 124279748 -28257511 + Lx8 LINE L1 6969 7143 -330 8 1533 1088 82 0 13 chr5 124279819 124279968 -28257291 + B1_Mus1 SINE Alu 2 148 0 8 1533 1244 54 0 0 chr5 124280217 124280364 -28256895 + B1_Mm SINE Alu 1 147 0 8 1533 1311 63 29 6 chr5 124280389 124280564 -28256695 + B2_Mm1a SINE B2 1 179 -14 8 1533 266 108 336 67 chr5 124280651 124280761 -28256498 + B2_Mm2 SINE B2 47 186 -9 8 1533 295 188 55 121 chr5 124280750 124280762 -28256497 - B4 SINE B4 -206 86 2 8 1533 420 192 0 13 chr5 124280762 124280841 -28256418 - B3A SINE B2 -119 79 2 8 1533 475 265 149 29 chr5 124280842 124281017 -28256242 - B3A SINE B2 -1 197 2 8 1533 21 0 0 0 chr5 124281038 124281059 -28256200 + AT_rich Low_complexity Low_complexity 1 21 0 8 1533 542 224 0 70 chr5 124281066 124281181 -28256078 - B3 SINE B2 -9 207 101 8 1533 825 167 41 7 chr5 124281366 124281511 -28255748 - B1_Mur4 SINE Alu 0 150 1 8 1533 390 215 55 31 chr5 124281727 124281839 -28255420 - B3A SINE B2 -100 116 1 8 1533 492 237 64 116 chr5 124282118 124282290 -28254969 + RSINE1 SINE B4 3 165 0 8 1533 351 218 0 25 chr5 124282787 124282867 -28254392 + ID4 SINE ID 5 82 -1 8 1533 252 238 32 116 chr5 124283052 124283063 -28254196 + MT2B LTR ERVL 152 238 -363 8 1533 424 219 0 24 chr5 124283063 124283147 -28254112 + B1_Mur3 SINE Alu 2 83 -66 8 1533 268 328 32 84 chr5 124283103 124283293 -28253966 + ORR1D2 LTR MaLR 79 258 -112 8 1533 494 272 31 54 chr5 124283326 124283465 -28253794 + ORR1D2 LTR MaLR 208 344 -35 8 1533 198 0 0 0 chr5 124283465 124283487 -28253772 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 8 1533 494 265 28 49 chr5 124283487 124283508 -28253751 + ORR1D2 LTR MaLR 338 354 -16 8 1533 253 103 26 0 chr5 124283518 124283557 -28253702 + ORR1D2 LTR MaLR 330 369 -1 8 1533 518 247 113 108 chr5 124283682 124283702 -28253557 + B4 SINE B4 69 135 -157 8 1533 983 102 7 14 chr5 124283702 124283842 -28253417 + B1_Mus2 SINE Alu 9 147 0 8 1533 518 247 113 108 chr5 124283842 124283877 -28253382 + B4 SINE B4 136 264 -28 8 1533 180 0 0 0 chr5 124283951 124283971 -28253288 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 8 1533 1260 20 33 0 chr5 124283971 124284123 -28253136 - B2_Mm1a SINE B2 -35 158 2 8 1533 367 291 132 76 chr5 124284123 124284333 -28252926 + ORR1E LTR MaLR 66 291 -68 8 1533 2297 129 82 37 chr5 124284333 124284734 -28252525 + MTC LTR MaLR 2 420 -1 8 1533 367 250 19 128 chr5 124284734 124284803 -28252456 + ORR1E LTR MaLR 292 379 0 8 1533 815 261 25 25 chr5 124284879 124285070 -28252189 + B4A SINE B4 1 191 -101 8 1533 638 273 20 34 chr5 124285070 124285218 -28252041 + RSINE1 SINE B4 2 147 -18 8 1533 381 70 0 0 chr5 124285226 124285283 -28251976 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1533 612 244 81 7 chr5 124285294 124285430 -28251829 + RSINE1 SINE B4 1 146 -19 8 1533 279 93 0 0 chr5 124285433 124285476 -28251783 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1533 383 83 17 0 chr5 124285640 124285700 -28251559 + (TCC)n Simple_repeat Simple_repeat 3 63 0 8 1533 741 102 0 0 chr5 124285784 124285892 -28251367 + (TTC)n Simple_repeat Simple_repeat 3 110 0 8 1533 185 94 31 0 chr5 124285903 124285935 -28251324 + (TC)n Simple_repeat Simple_repeat 1 33 0 8 1533 940 137 57 0 chr5 124285936 124286103 -28251156 - B2_Mm2 SINE B2 -7 209 1 8 1533 240 281 92 50 chr5 124286103 124286217 -28251042 - MLT1C LTR MaLR -289 178 60 8 1533 303 182 29 6 chr5 124286198 124286274 -28250985 - B3 SINE B2 -108 85 6 8 1533 870 202 32 27 chr5 124286294 124286482 -28250777 - B3 SINE B2 -3 213 25 8 1533 470 225 26 26 chr5 124286574 124286688 -28250571 - B1F SINE Alu 0 149 36 8 1533 466 259 84 21 chr5 124286838 124286980 -28250279 - B3 SINE B2 -64 152 2 8 1533 225 88 17 50 chr5 124286987 124287047 -28250212 + T-rich Low_complexity Low_complexity 3 60 0 8 1533 736 272 46 18 chr5 124287083 124287300 -28249959 - ID_B1 SINE B4 -1 223 1 8 1533 180 0 0 0 chr5 124287302 124287322 -28249937 + (TG)n Simple_repeat Simple_repeat 2 21 0 8 1533 444 218 100 113 chr5 124287786 124287825 -28249434 + B3A SINE B2 2 43 -155 8 1533 1109 103 162 20 chr5 124287825 124288023 -28249236 + URR1A DNA MER1_type 1 226 0 8 1533 444 218 100 113 chr5 124288023 124288133 -28249126 + B3A SINE B2 44 149 -49 8 1533 315 0 0 0 chr5 124288146 124288181 -28249078 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1533 195 254 0 0 chr5 124288570 124288633 -28248626 + CT-rich Low_complexity Low_complexity 1 63 0 8 1533 237 33 0 0 chr5 124289144 124289174 -28248085 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 8 1533 1240 41 7 0 chr5 124289174 124289320 -28247939 - B1_Mus2 SINE Alu 0 147 1 8 1533 1382 86 32 0 chr5 124289463 124289649 -28247610 - B2_Mm2 SINE B2 -2 193 2 9 1533 1254 86 0 17 chr5 124289869 124289883 -28247376 - B2_Mm2 SINE B2 -20 175 162 9 1533 231 36 0 0 chr5 124289883 124289911 -28247348 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 9 1533 1254 86 0 17 chr5 124289911 124290073 -28247186 - B2_Mm2 SINE B2 -34 161 2 9 1533 258 192 0 0 chr5 124290092 124290144 -28247115 + CT-rich Low_complexity Low_complexity 3 54 0 9 1533 212 314 0 0 chr5 124290146 124290197 -28247062 + polypyrimidine Low_complexity Low_complexity 2 52 0 9 1533 391 256 0 0 chr5 124291099 124291177 -28246082 - ID4 SINE ID 0 83 6 9 1533 1083 88 0 45 chr5 124291211 124291366 -28245893 - B1_Mus1 SINE Alu 0 148 1 9 1533 386 322 91 40 chr5 124291510 124291785 -28245474 - L1MB5 LINE L1 -305 5869 5581 9 1533 919 214 101 0 chr5 124291787 124291965 -28245294 - ID_B1 SINE B4 -21 203 8 9 1533 228 86 0 0 chr5 124292535 124292570 -28244689 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 9 1533 632 234 8 0 chr5 124292574 124292702 -28244557 - B1_Mur3 SINE Alu -16 133 5 9 1533 1004 141 6 0 chr5 124293218 124293395 -28243864 + (TTC)n Simple_repeat Simple_repeat 1 178 0 9 1533 1003 98 0 0 chr5 124293422 124293554 -28243705 - B1_Mur4 SINE Alu -6 144 13 9 1533 474 174 8 121 chr5 124293451 124293575 -28243684 - MT2B LTR ERVL -337 264 155 9 1533 381 93 0 0 chr5 124293577 124293631 -28243628 + (TA)n Simple_repeat Simple_repeat 2 55 0 9 1533 352 52 52 0 chr5 124293839 124293897 -28243362 + (GAAA)n Simple_repeat Simple_repeat 3 63 0 9 1533 387 0 0 0 chr5 124294191 124294234 -28243025 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1533 424 176 196 36 chr5 124294238 124294350 -28242909 - B3A SINE B2 -68 130 1 9 1533 260 244 0 13 chr5 124294357 124294436 -28242823 - L1MB5 LINE L1 -779 5415 5338 9 1533 360 341 49 62 chr5 124294517 124294742 -28242517 + MIR SINE MIR 41 262 0 9 1533 322 283 60 34 chr5 124294746 124294863 -28242396 - L1MB5 LINE L1 -913 5233 5114 9 1533 342 275 12 0 chr5 124295088 124295168 -28242091 + ORR1E LTR MaLR 3 83 -276 9 1533 1245 231 76 53 chr5 124295356 124295713 -28241546 - ORR1D2 LTR MaLR 0 370 6 9 1533 365 281 37 97 chr5 124295747 124295881 -28241378 + B1_Mur2 SINE Alu 1 126 -23 9 1533 607 222 192 42 chr5 124295916 124295961 -28241298 - ID_B1 SINE B4 0 224 180 9 1533 805 163 0 58 chr5 124295961 124296117 -28241142 - B1_Mus2 SINE Alu 0 147 1 9 1533 607 222 192 42 chr5 124296117 124296264 -28240995 - ID_B1 SINE B4 -45 179 5 9 1533 285 29 0 0 chr5 124296353 124296387 -28240872 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1533 275 211 58 0 chr5 124296500 124296552 -28240707 + ID4 SINE ID 20 74 -9 9 1533 285 75 0 0 chr5 124296553 124296593 -28240666 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 9 1533 672 144 16 48 chr5 124296602 124296726 -28240533 + PB1D9 SINE Alu 1 120 0 9 1533 226 106 43 0 chr5 124297203 124297250 -28240009 + (TCCC)n Simple_repeat Simple_repeat 1 49 0 9 1533 356 284 76 17 chr5 124297337 124297455 -28239804 - B3A SINE B2 -73 125 1 9 1533 784 88 0 9 chr5 124297518 124297632 -28239627 - B1_Mus2 SINE Alu 0 147 35 9 1533 868 182 0 26 chr5 124298622 124298774 -28238485 - B1_Mur3 SINE Alu 0 149 2 9 1533 1230 83 0 0 chr5 124299160 124299316 -28237943 + B2_Mm2 SINE B2 2 157 -38 9 1533 360 0 0 0 chr5 124299316 124299356 -28237903 + (TAA)n Simple_repeat Simple_repeat 3 42 0 9 1533 596 241 83 0 chr5 124299369 124299502 -28237757 - B1_Mur2 SINE Alu -5 144 1 9 1533 198 0 0 0 chr5 124299503 124299525 -28237734 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1533 252 152 0 0 chr5 124299560 124299575 -28237684 + A-rich Low_complexity Low_complexity 1 15 0 9 1533 549 216 13 39 chr5 124299575 124299665 -28237594 + B1_Mur4 SINE Alu 1 86 -64 9 1533 1496 53 5 26 chr5 124299665 124299860 -28237399 + B2_Mm1t SINE B2 1 191 -2 9 1533 549 216 13 39 chr5 124299860 124299923 -28237336 + B1_Mur4 SINE Alu 87 149 -1 9 1533 252 152 0 0 chr5 124299923 124299966 -28237293 + A-rich Low_complexity Low_complexity 16 58 0 9 1533 967 216 25 20 chr5 124299981 124300184 -28237075 - B3 SINE B2 -11 205 2 9 1533 207 0 0 0 chr5 124300350 124300373 -28236886 + (TAGG)n Simple_repeat Simple_repeat 2 24 0 9 1533 327 65 0 0 chr5 124300373 124300419 -28236840 + (CATA)n Simple_repeat Simple_repeat 3 48 0 9 1533 651 202 25 16 chr5 124300493 124300614 -28236645 - B3A SINE B2 -66 132 11 9 1533 347 192 88 25 chr5 124300642 124300722 -28236537 - B1_Mus1 SINE Alu -52 96 12 9 1533 1703 26 0 0 chr5 124300730 124300921 -28236338 - B2_Mm1a SINE B2 -1 192 2 9 1533 189 0 0 0 chr5 124300921 124300942 -28236317 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1533 610 223 16 8 chr5 124300973 124301095 -28236164 - RSINE1 SINE B4 -37 128 6 9 1533 240 324 14 0 chr5 124301426 124301497 -28235762 - MLT1B LTR MaLR -12 378 307 9 1533 547 250 75 32 chr5 124301499 124301685 -28235574 + ORR1E LTR MaLR 1 194 -165 9 1533 336 286 0 81 chr5 124301826 124301925 -28235334 + PB1D10 SINE Alu 7 97 -20 9 1533 360 0 0 0 chr5 124301929 124301969 -28235290 + (TAGG)n Simple_repeat Simple_repeat 4 43 0 9 1533 606 95 0 0 chr5 124301969 124302064 -28235195 + (CATA)n Simple_repeat Simple_repeat 2 96 0 9 1533 314 227 0 96 chr5 124302139 124302222 -28235037 - B3A SINE B2 -118 80 6 9 1533 381 269 58 51 chr5 124302270 124302284 -28234975 - B1_Mur3 SINE Alu -2 147 137 9 1533 180 0 0 0 chr5 124302284 124302304 -28234955 + (TAA)n Simple_repeat Simple_repeat 2 21 0 9 1533 381 269 58 51 chr5 124302304 124302426 -28234833 - B1_Mur3 SINE Alu -13 136 10 9 1533 971 201 32 68 chr5 124302426 124302523 -28234736 - ID_B1 SINE B4 -13 211 1 9 1533 331 250 120 60 chr5 124302549 124302562 -28234697 - B2_Mm2 SINE B2 -1 194 182 9 1533 648 229 35 7 chr5 124302562 124302703 -28234556 - B1_Mur2 SINE Alu 0 149 5 9 1533 472 247 86 22 chr5 124302703 124302872 -28234387 - B3A SINE B2 -14 181 1 9 1533 346 173 39 26 chr5 124302872 124302949 -28234310 - B1F SINE Alu -3 146 69 9 1533 373 208 0 198 chr5 124302954 124303080 -28234179 - B1F SINE Alu -28 121 21 9 1533 459 252 17 0 chr5 124302979 124303094 -28234165 - ID_B1 SINE B4 -21 203 87 9 1533 575 277 71 21 chr5 124303190 124303330 -28233929 + RSINE1 SINE B4 6 152 -13 9 1533 198 0 0 0 chr5 124303331 124303353 -28233906 + (CA)n Simple_repeat Simple_repeat 1 22 0 9 1533 749 178 52 0 chr5 124303368 124303503 -28233756 - B1_Mur1 SINE Alu -6 143 2 9 1533 810 267 5 56 chr5 124303522 124303736 -28233523 - B3 SINE B2 -6 210 8 9 1533 579 271 56 51 chr5 124303750 124303964 -28233295 - B3 SINE B2 0 216 2 9 1533 314 370 87 0 chr5 124304252 124304390 -28232869 + MIR SINE MIR 19 168 -94 9 1533 509 55 14 0 chr5 124304971 124305044 -28232215 + (TTTC)n Simple_repeat Simple_repeat 4 77 0 9 1533 776 157 7 34 chr5 124305052 124305957 -28231302 + (TG)n Simple_repeat Simple_repeat 1 880 0 9 1533 905 167 0 28 chr5 124305962 124306141 -28231118 - B2_Mm2 SINE B2 -21 174 1 9 1533 3257 216 73 46 chr5 124306141 124307003 -28230256 - RMER19B LTR ERVK -17 885 1 9 1533 1005 234 14 9 chr5 124307011 124307231 -28230028 - B4 SINE B4 -65 227 7 9 1533 271 0 0 49 chr5 124307542 124307583 -28229676 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1533 195 42 0 0 chr5 124307585 124307609 -28229650 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 1533 253 308 26 0 chr5 124307904 124307982 -28229277 + ID4 SINE ID 3 82 -1 9 1533 708 45 0 0 chr5 124308002 124308090 -28229169 + (CA)n Simple_repeat Simple_repeat 1 88 0 9 1533 369 0 0 0 chr5 124308127 124308168 -28229091 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 9 1533 1217 75 6 0 chr5 124308168 124308327 -28228932 - B2_Mm2 SINE B2 -34 161 2 9 1533 387 0 0 0 chr5 124308357 124308400 -28228859 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1533 288 226 11 116 chr5 124308494 124308589 -28228670 - B4 SINE B4 -156 136 52 9 1533 355 269 114 8 chr5 124308766 124308897 -28228362 - B1F1 SINE Alu 0 149 5 9 1533 475 295 164 30 chr5 124309010 124309241 -28228018 - RMER15 LTR ERVL -40 535 274 9 1533 490 289 42 60 chr5 124309482 124309648 -28227611 - B4A SINE B4 -13 279 117 9 1533 566 196 73 86 chr5 124309753 124309904 -28227355 - B1_Mur1 SINE Alu 0 149 1 9 1533 374 220 58 125 chr5 124309959 124310063 -28227196 - PB1 SINE Alu -3 124 24 9 1533 476 276 43 31 chr5 124310761 124310922 -28226337 + RSINE1 SINE B4 1 163 -2 9 1533 29 28 0 0 chr5 124310937 124310973 -28226286 + AT_rich Low_complexity Low_complexity 1 36 0 9 1533 262 250 39 13 chr5 124311013 124311090 -28226169 - MER2 DNA MER2_type -26 319 241 9 1533 481 298 8 34 chr5 124311098 124311216 -28226043 + ID_B1 SINE B4 18 132 -92 9 1533 1204 62 7 0 chr5 124311377 124311523 -28225736 - B1_Mus1 SINE Alu 0 148 2 9 1533 289 194 0 31 chr5 124311523 124311587 -28225672 + MLT1C LTR MaLR 402 463 -4 9 1533 5122 65 25 13 chr5 124311591 124312262 -28224997 + L1Md_F2 LINE L1 5902 6580 -2 9 1533 327 350 119 47 chr5 124312413 124312799 -28224460 + L2a LINE L2 3013 3426 0 9 1533 207 0 0 0 chr5 124315981 124316004 -28221255 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 9 1533 548 309 52 21 chr5 124316038 124316230 -28221029 - B3A SINE B2 0 198 1 9 1533 296 213 99 27 chr5 124316246 124316354 -28220905 - PB1D10 SINE Alu 0 120 3 9 1533 242 340 65 9 chr5 124316354 124316410 -28220849 - B4A SINE B4 -198 94 33 9 1533 799 159 80 0 chr5 124316519 124316657 -28220602 + B1_Mur4 SINE Alu 2 150 0 9 1533 401 132 0 17 chr5 124316887 124316993 -28220266 - B2_Mm2 SINE B2 -7 188 49 9 1533 1103 112 30 0 chr5 124317023 124317192 -28220067 - B2_Mm1t SINE B2 -14 179 6 1 1533 187 31 62 0 chr5 124317201 124317233 -28220026 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1533 848 101 0 16 chr5 124317254 124317375 -28219884 - B1_Mus1 SINE Alu -1 147 29 1 1533 186 118 0 0 chr5 124317439 124317473 -28219786 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 1 1533 812 257 35 12 chr5 124317473 124317642 -28219617 - B3A SINE B2 -25 173 1 1 1533 352 208 54 90 chr5 124317652 124317763 -28219496 - PB1D10 SINE Alu -8 109 3 1 1533 405 318 46 8 chr5 124317885 124318015 -28219244 + ORR1E LTR MaLR 1 135 -224 1 1533 216 0 0 0 chr5 124318169 124318193 -28219066 + (CAA)n Simple_repeat Simple_repeat 3 26 0 1 1533 279 79 0 0 chr5 124318329 124318367 -28218892 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1533 390 313 65 45 chr5 124318438 124318592 -28218667 - B4A SINE B4 -124 168 12 1 1533 24 0 0 0 chr5 124318598 124318622 -28218637 + AT_rich Low_complexity Low_complexity 1 24 0 1 1533 465 263 70 0 chr5 124318643 124318757 -28218502 + ID_B1 SINE B4 103 224 0 1 1533 1137 260 36 137 chr5 124318804 124319219 -28218040 + MTE2a LTR MaLR 7 379 0 1 1533 885 103 32 0 chr5 124319235 124319390 -28217869 + (TTTC)n Simple_repeat Simple_repeat 2 161 0 1 1533 580 167 124 0 chr5 124319390 124319507 -28217752 - B1_Mus2 SINE Alu -13 135 5 1 1533 317 242 47 75 chr5 124319413 124319520 -28217739 - MT2B LTR ERVL -344 257 154 1 1533 404 260 111 37 chr5 124320046 124320154 -28217105 - PB1 SINE Alu -7 120 5 1 1533 595 243 27 54 chr5 124320179 124320327 -28216932 + B1F2 SINE Alu 5 148 -1 1 1533 786 216 0 26 chr5 124320327 124320479 -28216780 + B3 SINE B2 1 148 -68 1 1533 608 222 26 46 chr5 124320528 124320668 -28216591 + B1_Mur1 SINE Alu 1 137 -12 1 1533 189 0 0 0 chr5 124320668 124320689 -28216570 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 1533 380 275 0 0 chr5 124320722 124320802 -28216457 + ID4 SINE ID 2 81 -2 1 1533 378 372 14 7 chr5 124320818 124320964 -28216295 - MIRb SINE MIR -8 260 114 1 1533 1022 174 83 15 chr5 124320965 124321169 -28216090 - URR1A DNA MER1_type -1 225 8 1 1533 239 279 93 55 chr5 124321216 124321398 -28215861 - MLT1H2 LTR MaLR 0 489 301 1 1533 924 209 156 19 chr5 124321422 124321685 -28215574 - MTEb LTR MaLR -3 376 78 1 1533 180 152 0 0 chr5 124322177 124322210 -28215049 + (TA)n Simple_repeat Simple_repeat 1 33 0 1 1533 304 290 122 0 chr5 124322238 124322345 -28214914 + L1MCa LINE L1 1901 2020 -4488 1 1533 1218 41 7 0 chr5 124322347 124322493 -28214766 - B1_Mus1 SINE Alu -1 147 1 1 1533 323 303 72 18 chr5 124322505 124322516 -28214743 - PB1D10 SINE Alu 0 117 107 1 1533 1049 121 12 0 chr5 124322516 124322689 -28214570 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1 1533 323 303 72 18 chr5 124322689 124322788 -28214471 - PB1D10 SINE Alu -11 106 2 1 1533 655 260 65 0 chr5 124322788 124322865 -28214394 - ID SINE ID -135 89 3 1 1533 363 44 0 0 chr5 124322882 124322927 -28214332 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 1 1533 349 259 24 0 chr5 124322962 124323047 -28214212 - B3 SINE B2 -86 130 44 1 1533 329 138 45 88 chr5 124323061 124323150 -28214109 + B1F SINE Alu 70 149 0 1 1533 241 315 75 21 chr5 124323233 124323327 -28213932 + MER45B DNA Tip100 942 1040 0 1 1533 1254 95 0 0 chr5 124323602 124323781 -28213478 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1 1533 885 254 35 0 chr5 124323782 124323979 -28213280 - B3 SINE B2 -12 204 1 1 1533 766 154 0 17 chr5 124323979 124324098 -28213161 + B1_Mur1 SINE Alu 33 149 0 1 1533 343 210 12 24 chr5 124324552 124324635 -28212624 + RLTR11A LTR ERVK 90 171 -357 1 1533 904 194 15 25 chr5 124324651 124324847 -28212412 + RLTR11A LTR ERVK 308 501 -27 1 1533 222 37 0 0 chr5 124324869 124324896 -28212363 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1533 1225 41 7 0 chr5 124325063 124325210 -28212049 + B1_Mus1 SINE Alu 1 148 0 1 1533 198 91 0 0 chr5 124325238 124325271 -28211988 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1533 638 293 91 146 chr5 124325312 124325396 -28211863 - B4 SINE B4 0 292 229 1 1533 415 209 201 36 chr5 124325396 124325535 -28211724 - RSINE1 SINE B4 -2 163 2 1 1533 667 271 138 25 chr5 124325535 124325758 -28211501 - B4A SINE B4 -64 228 2 1 1533 1134 102 0 0 chr5 124325815 124325962 -28211297 + B1_Mus2 SINE Alu 1 147 0 1 1533 457 130 26 0 chr5 124326144 124326221 -28211038 - B1_Mus2 SINE Alu 0 147 69 1 1533 216 167 0 0 chr5 124326436 124326484 -28210775 + C-rich Low_complexity Low_complexity 1 48 0 1 1533 195 326 136 36 chr5 124326848 124326988 -28210271 - MIR SINE MIR -71 191 38 1 1533 511 221 61 67 chr5 124327027 124327192 -28210067 - RSINE1 SINE B4 -1 164 1 1 1533 320 268 12 12 chr5 124327638 124327721 -28209538 + ID4_ SINE ID 1 83 0 1 1533 180 0 0 0 chr5 124330851 124330871 -28206388 + (CG)n Simple_repeat Simple_repeat 2 21 0 1 1533 414 0 0 0 chr5 124330871 124330916 -28206343 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1533 644 200 31 43 chr5 124330943 124331105 -28206154 - B3A SINE B2 -38 160 1 1 1533 764 0 22 0 chr5 124331119 124331210 -28206049 + (TTTC)n Simple_repeat Simple_repeat 4 96 0 1 1533 730 173 55 0 chr5 124331218 124331345 -28205914 + B1_Mur3 SINE Alu 3 136 -13 1 1533 246 274 153 31 chr5 124331394 124331492 -28205767 - B1_Mur3 SINE Alu -30 119 10 1 1533 217 341 24 0 chr5 124331520 124331605 -28205654 + CT-rich Low_complexity Low_complexity 4 90 0 1 1533 225 235 45 45 chr5 124331814 124331903 -28205356 - Charlie10 DNA MER1_type -957 1865 1777 1 1533 231 211 33 66 chr5 124331898 124331959 -28205300 - ID4 SINE ID -10 73 15 1 1533 593 127 50 13 chr5 124331998 124332157 -28205102 + CT-rich Low_complexity Low_complexity 3 167 0 1 1533 385 200 27 0 chr5 124332454 124332529 -28204730 - ID SINE ID -143 81 5 1 1533 307 255 277 0 chr5 124332537 124332631 -28204628 - PB1D7 SINE Alu 0 120 1 1 1533 968 72 57 14 chr5 124332667 124332807 -28204452 - B1_Mur4 SINE Alu 0 150 5 1 1533 1161 34 0 75 chr5 124332824 124332840 -28204419 - B1_Mm SINE Alu 0 147 137 1 1533 243 61 0 0 chr5 124332840 124332873 -28204386 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1 1533 1161 34 0 75 chr5 124332873 124333015 -28204244 - B1_Mm SINE Alu -11 136 1 1 1533 521 178 29 29 chr5 124333045 124333149 -28204110 - B1F SINE Alu 0 149 46 1 1533 186 43 0 0 chr5 124333836 124333859 -28203400 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1533 586 135 149 28 chr5 124333888 124333995 -28203264 - PB1D9 SINE Alu 0 120 1 1 1533 204 40 0 0 chr5 124334486 124334511 -28202748 + (GGA)n Simple_repeat Simple_repeat 1 25 0 1 1533 649 208 20 3 chr5 124334815 124335128 -28202131 + (TG)n Simple_repeat Simple_repeat 1 318 0 1 1533 204 217 0 0 chr5 124335159 124335205 -28202054 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1533 239 303 45 0 chr5 124335209 124335275 -28201984 - ID4 SINE ID -10 73 5 1 1533 189 0 0 0 chr5 124335287 124335308 -28201951 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1533 1259 41 0 0 chr5 124335308 124335455 -28201804 - B1_Mus2 SINE Alu 0 147 1 1 1533 292 272 98 50 chr5 124335620 124335676 -28201583 - B4A SINE B4 -114 178 2 1 1533 403 226 74 56 chr5 124335676 124335784 -28201475 - B3A SINE B2 -87 111 2 1 1533 858 243 19 5 chr5 124335963 124336170 -28201089 + B3 SINE B2 1 210 -6 1 1533 189 0 0 0 chr5 124336418 124336439 -28200820 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1 1533 305 314 19 19 chr5 124336767 124336874 -28200385 + L1MC5 LINE L1 7609 7715 -246 1 1533 1204 61 0 0 chr5 124336894 124337041 -28200218 + B1_Mus1 SINE Alu 2 148 0 1 1533 183 42 0 0 chr5 124337043 124337067 -28200192 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 1 1533 389 277 133 37 chr5 124337106 124337241 -28200018 - RSINE1 SINE B4 -15 150 3 1 1533 301 247 55 22 chr5 124337287 124337378 -28199881 + BC1_Mm scRNA scRNA 12 105 -47 1 1533 299 333 39 100 chr5 124337401 124337531 -28199728 + RSINE1 SINE B4 44 165 0 1 1533 739 212 4 9 chr5 124337532 124337756 -28199503 + (CATA)n Simple_repeat Simple_repeat 1 222 0 1 1533 389 206 0 11 chr5 124337767 124337860 -28199399 + (CA)n Simple_repeat Simple_repeat 2 93 0 1 1533 906 141 45 80 chr5 124337892 124338093 -28199166 - B2_Mm2 SINE B2 0 195 2 1 1533 310 237 15 0 chr5 124338097 124338179 -28199080 - BC1_Mm scRNA scRNA -61 91 8 1 1533 1740 169 55 79 chr5 124338218 124338597 -28198662 - ORR1C1 LTR MaLR -8 370 1 1 1533 235 328 23 54 chr5 124338597 124338725 -28198534 - B1F SINE Alu -16 133 10 1 1533 412 228 97 0 chr5 124338797 124338912 -28198347 - B1F2 SINE Alu -9 140 15 1 1533 354 315 11 0 chr5 124338965 124339054 -28198205 + ID_B1 SINE B4 5 94 -130 1 1533 528 298 15 22 chr5 124339437 124339571 -28197688 + ID_B1 SINE B4 88 220 -4 1 1533 256 230 173 0 chr5 124339578 124339657 -28197602 + B3A SINE B2 1 91 -125 1 1533 226 289 63 63 chr5 124339705 124339816 -28197443 + B2_Mm2 SINE B2 76 186 -9 1 1533 474 142 184 28 chr5 124340167 124340276 -28196983 - B3 SINE B2 -90 126 1 1 1533 1249 145 0 5 chr5 124340297 124340491 -28196768 - B2_Mm2 SINE B2 -2 193 1 1 1533 277 292 0 89 chr5 124340491 124340570 -28196689 - PB1D10 SINE Alu -41 76 5 1 1533 251 313 71 64 chr5 124340518 124340607 -28196652 - B4A SINE B4 -151 141 1 1 1533 287 118 157 0 chr5 124340607 124340658 -28196601 - B3A SINE B2 -139 59 1 1 1533 312 296 136 0 chr5 124340666 124340754 -28196505 - PB1D10 SINE Alu -6 111 12 1 1533 22 35 0 0 chr5 124341472 124341501 -28195758 + AT_rich Low_complexity Low_complexity 1 29 0 1 1533 216 189 0 0 chr5 124341717 124341754 -28195505 + (CAGA)n Simple_repeat Simple_repeat 3 39 0 1 1533 518 220 164 23 chr5 124341920 124342097 -28195162 - RMER17C-int LTR ERVK -1495 5055 4965 1 1533 1095 223 21 76 chr5 124342095 124342386 -28194873 - RMER17C-int LTR ERVK -351 2887 2613 1 1533 1138 50 7 0 chr5 124342390 124342530 -28194729 + B1_Mus2 SINE Alu 1 141 -6 1 1533 624 27 0 0 chr5 124342532 124342606 -28194653 + (GAAAA)n Simple_repeat Simple_repeat 2 75 0 1 1533 588 206 0 9 chr5 124342740 124342848 -28194411 + LSU-rRNA_Hsa rRNA rRNA 4199 4305 -730 1 1533 481 181 33 115 chr5 124342849 124343036 -28194223 - RMER17C-int LTR ERVK -714 2524 2265 1 1533 1301 119 5 0 chr5 124343141 124343326 -28193933 - B2_Mm1a SINE B2 -6 187 2 1 1533 378 179 57 209 chr5 124343599 124343776 -28193483 - RMER17C-int LTR ERVK -3679 1843 1694 1 1533 226 232 0 35 chr5 124343799 124343844 -28193415 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1533 1173 68 0 0 chr5 124343844 124343990 -28193269 - B1_Mus1 SINE Alu -2 146 1 1 1533 217 327 36 12 chr5 124343990 124344111 -28193148 + (CATATA)n Simple_repeat Simple_repeat 1 126 0 1 1533 23 0 0 0 chr5 124344237 124344260 -28192999 + AT_rich Low_complexity Low_complexity 1 23 0 1 1533 312 27 0 0 chr5 124344402 124344439 -28192820 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1533 370 297 113 71 chr5 124344874 124345113 -28192146 - RodERV21-int LTR ERV1 -4277 714 466 1 1533 255 325 38 19 chr5 124345109 124345144 -28192115 - RodERV21-int LTR ERV1 -4784 207 174 1 1533 1441 54 27 5 chr5 124345144 124345303 -28191956 + B2_Mm1a SINE B2 2 160 -33 1 1533 207 0 0 0 chr5 124345303 124345326 -28191933 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1533 1441 54 27 5 chr5 124345326 124345353 -28191906 + B2_Mm1a SINE B2 161 192 -1 1 1533 255 325 38 19 chr5 124345353 124345474 -28191785 - RodERV21-int LTR ERV1 -4818 173 48 1 1533 732 238 251 43 chr5 124345872 124346332 -28190927 + RMER4B LTR ERVK 1 571 -14 1 1533 431 195 0 0 chr5 124346836 124346913 -28190346 + B1_Mur1 SINE Alu 71 147 -2 1 1533 601 294 7 14 chr5 124346982 124347130 -28190129 + RSINE1 SINE B4 4 150 -15 1 1533 247 143 101 135 chr5 124347181 124347270 -28189989 + 4.5SRNA scRNA scRNA 1 86 -8 1 1533 914 96 7 22 chr5 124347191 124347330 -28189929 + B1_Mm SINE Alu 11 147 0 1 1533 941 252 59 37 chr5 124347798 124347868 -28189391 - B4 SINE B4 -10 282 218 1 1533 253 43 21 42 chr5 124347868 124347916 -28189343 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1 1533 941 252 59 37 chr5 124347916 124348117 -28189142 - B4 SINE B4 -75 217 5 1 1533 407 103 0 0 chr5 124348230 124348288 -28188971 - B1_Mus1 SINE Alu -89 59 2 1 1533 276 154 324 27 chr5 124348296 124348407 -28188852 - B2_Mm2 SINE B2 -5 190 47 1 1533 351 0 0 0 chr5 124348421 124348460 -28188799 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1 1533 1236 71 0 0 chr5 124348462 124348616 -28188643 - B2_Mm2 SINE B2 -41 154 1 1 1533 412 326 0 20 chr5 124348756 124348903 -28188356 + RSINE1 SINE B4 3 146 -19 1 1533 651 207 14 48 chr5 124349036 124349183 -28188076 + B1_Mur4 SINE Alu 7 148 -2 1 1533 189 74 0 0 chr5 124349200 124349227 -28188032 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1 1533 852 117 102 0 chr5 124349245 124349373 -28187886 + B1_Mur4 SINE Alu 1 141 -9 1 1533 398 20 0 19 chr5 124349373 124349425 -28187834 + (CAAAC)n Simple_repeat Simple_repeat 2 52 0 1 1533 341 309 101 108 chr5 124349503 124349909 -28187350 + RMER17C LTR ERVK 8 410 0 1 1533 218 266 125 0 chr5 124349963 124350027 -28187232 + ID4 SINE ID 11 82 -1 1 1533 1515 101 108 8 chr5 124350038 124350288 -28186971 - MTC LTR MaLR 0 421 147 1 1533 433 306 0 32 chr5 124350299 124350424 -28186835 + Lx8 LINE L1 6513 6633 -840 1 1533 1277 80 23 0 chr5 124350430 124350605 -28186654 - B2_Mm2 SINE B2 -3 192 14 1 1533 990 273 174 31 chr5 124350612 124350677 -28186582 + Lx7 LINE L1 6631 6734 -962 1 1533 1864 93 81 101 chr5 124350677 124351066 -28186193 + RMER17C LTR ERVK 1 376 -34 1 1533 342 0 0 0 chr5 124351066 124351104 -28186155 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1533 1150 52 0 0 chr5 124351105 124351241 -28186018 - B1_Mus1 SINE Alu -12 136 1 1 1533 1864 93 81 101 chr5 124351241 124351267 -28185992 + RMER17C LTR ERVK 377 410 0 1 1533 990 273 174 31 chr5 124351267 124351723 -28185536 + Lx7 LINE L1 6735 7225 -471 1 1533 2890 151 20 50 chr5 124351724 124352268 -28184991 - RLTR11A LTR ERVK 0 528 1 1 1533 22 0 0 0 chr5 124352328 124352350 -28184909 + AT_rich Low_complexity Low_complexity 1 22 0 1 1533 1358 71 16 16 chr5 124352396 124352582 -28184677 + B2_Mm2 SINE B2 2 187 -8 1 1533 24 0 0 29 chr5 124352595 124352610 -28184649 + AT_rich Low_complexity Low_complexity 1 15 0 1 1533 1151 82 7 0 chr5 124352610 124352756 -28184503 + B1_Mus2 SINE Alu 1 147 0 1 1533 24 0 0 29 chr5 124352756 124352775 -28184484 + AT_rich Low_complexity Low_complexity 1 19 0 1 1533 236 186 17 0 chr5 124352775 124352834 -28184425 + (TA)n Simple_repeat Simple_repeat 2 61 0 1 1533 819 0 0 0 chr5 124353184 124353275 -28183984 + (TTC)n Simple_repeat Simple_repeat 3 93 0 1 1533 621 129 0 0 chr5 124353278 124353371 -28183888 - B1_Mur2 SINE Alu -15 134 42 1 1533 342 154 3 81 chr5 124353373 124353681 -28183578 + CT-rich Low_complexity Low_complexity 1 283 0 1 1533 323 88 33 50 chr5 124353684 124353744 -28183515 - PB1D9 SINE Alu -61 59 1 1 1533 604 273 39 44 chr5 124353854 124354034 -28183225 - ID_B1 SINE B4 -45 179 1 1 1533 243 302 57 32 chr5 124354429 124354552 -28182707 - LTR33 LTR ERVL -357 158 33 1 1533 1038 101 250 0 chr5 124354680 124354848 -28182411 + B3 SINE B2 2 211 -5 1 1533 1155 44 0 0 chr5 124354873 124355009 -28182250 + B1_Mus1 SINE Alu 2 137 -11 1 1533 243 0 0 0 chr5 124355009 124355036 -28182223 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1533 556 115 32 8 chr5 124355123 124355246 -28182013 + (TG)n Simple_repeat Simple_repeat 1 126 0 1 1533 409 339 138 6 chr5 124355248 124355429 -28181830 - B4 SINE B4 -2 290 86 1 1533 474 289 30 42 chr5 124355458 124355624 -28181635 - RSINE1 SINE B4 0 165 2 1 1533 258 283 17 0 chr5 124355624 124355679 -28181580 - B4A SINE B4 -196 96 41 1 1533 464 242 0 39 chr5 124355738 124355841 -28181418 - PB1D10 SINE Alu 0 117 19 1 1533 1132 47 29 0 chr5 124355847 124356019 -28181240 + (CA)n Simple_repeat Simple_repeat 1 177 0 1 1533 894 146 0 30 chr5 124356060 124356194 -28181065 - B1_Mus2 SINE Alu -16 131 2 1 1533 517 293 0 167 chr5 124356194 124356281 -28180978 - ID_B1 SINE B4 -16 208 25 1 1533 472 139 0 27 chr5 124356303 124356371 -28180888 - B1_Mus1 SINE Alu -54 94 28 1 1533 312 250 14 0 chr5 124356371 124356443 -28180816 + ID4_ SINE ID 2 74 -9 1 1533 696 299 43 64 chr5 124358993 124359275 -28177984 - B4A SINE B4 0 292 17 1 1533 910 158 0 0 chr5 124359284 124359423 -28177836 - B1_Mus1 SINE Alu -8 140 2 1 1533 772 243 22 17 chr5 124359535 124359715 -28177544 - B3A SINE B2 -17 181 1 1 1533 467 250 0 19 chr5 124360779 124360885 -28176374 + PB1D10 SINE Alu 6 109 -8 1 1533 241 344 2 87 chr5 124360977 124361101 -28176158 + MIRc SINE MIR 46 161 -101 1 1533 537 176 185 39 chr5 124361113 124361243 -28176016 + B1_Mur1 SINE Alu 1 149 0 1 1533 216 0 0 0 chr5 124361245 124361269 -28175990 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1533 436 186 31 10 chr5 124361338 124361436 -28175823 - B1_Mm SINE Alu -6 141 42 1 1533 243 114 0 0 chr5 124361456 124361500 -28175759 + (CTTG)n Simple_repeat Simple_repeat 2 45 0 1 1533 1252 80 73 6 chr5 124361500 124361677 -28175582 - B2_Mm2 SINE B2 -5 190 2 1 1533 537 221 81 0 chr5 124361701 124361837 -28175422 - B1_Mus2 SINE Alu 0 147 1 1 1533 258 30 0 0 chr5 124361942 124361956 -28175303 + (CAAAA)n Simple_repeat Simple_repeat 3 16 0 1 1533 1158 81 0 0 chr5 124361956 124362104 -28175155 + B1_Mus1 SINE Alu 1 148 0 1 1533 258 30 0 0 chr5 124362104 124362122 -28175137 + (CAAAA)n Simple_repeat Simple_repeat 2 19 0 1 1533 274 308 96 0 chr5 124362134 124362238 -28175021 + RSINE1 SINE B4 3 116 -49 1 1533 338 278 0 0 chr5 124362306 124362378 -28174881 + PB1D7 SINE Alu 49 120 0 1 1533 365 152 51 0 chr5 124362383 124362442 -28174817 + PB1D9 SINE Alu 17 78 -42 1 1533 417 153 0 0 chr5 124362445 124362517 -28174742 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 1 1533 381 261 42 32 chr5 124362518 124362613 -28174646 - B3 SINE B2 -9 207 112 1 1533 276 242 0 49 chr5 124362608 124362696 -28174563 - B1_Mus1 SINE Alu -34 86 1 1 1533 567 248 24 97 chr5 124362718 124362883 -28174376 - ID_B1 SINE B4 -23 201 49 1 1533 220 337 65 56 chr5 124362972 124363079 -28174180 - RSINE1 SINE B4 -36 129 22 1 1533 468 171 24 0 chr5 124363238 124363320 -28173939 + RSINE1 SINE B4 16 99 -66 1 1533 357 250 53 106 chr5 124364244 124364338 -28172921 + PB1 SINE Alu 10 98 -216 1 1533 615 273 62 6 chr5 124364360 124364537 -28172722 - B3A SINE B2 -11 187 1 1 1533 234 346 0 13 chr5 124364892 124364971 -28172288 + PB1D10 SINE Alu 1 78 -39 1 1533 1490 54 5 11 chr5 124365338 124365526 -28171733 - B2_Mm1t SINE B2 -6 187 1 1 1533 501 232 60 72 chr5 124365570 124365737 -28171522 - RSINE1 SINE B4 0 165 1 1 1533 404 264 0 120 chr5 124365799 124365822 -28171437 - B1F SINE Alu -2 147 126 1 1533 706 186 21 63 chr5 124365822 124365965 -28171294 + B1_Mus2 SINE Alu 1 137 -10 1 1533 505 259 0 29 chr5 124365965 124366087 -28171172 - PB1 SINE Alu -24 125 19 1 1533 627 251 82 25 chr5 124366117 124366313 -28170946 - B3 SINE B2 -1 215 9 1 1533 277 330 43 52 chr5 124366482 124366597 -28170662 - PB1D10 SINE Alu -3 114 1 1 1533 809 55 18 0 chr5 124366682 124366792 -28170467 + (TTTC)n Simple_repeat Simple_repeat 2 113 0 1 1533 1276 104 0 0 chr5 124366794 124366967 -28170292 - B2_Mm2 SINE B2 -21 174 2 1 1533 241 210 173 0 chr5 124367018 124367099 -28170160 + B1_Mus2 SINE Alu 2 96 -51 1 1533 1107 75 120 60 chr5 124367395 124367554 -28169705 + B2_Mm2 SINE B2 1 175 -20 1 1533 1647 16 0 25 chr5 124367554 124367750 -28169509 - B2_Mm1a SINE B2 -1 192 2 1 1533 1107 75 120 60 chr5 124367750 124367773 -28169486 + B2_Mm2 SINE B2 176 194 -1 1 1533 364 246 14 14 chr5 124367909 124367983 -28169276 + ID4_ SINE ID 10 83 0 1 1533 1389 96 5 0 chr5 124368034 124368221 -28169038 - B2_Mm1a SINE B2 -5 188 1 1 1533 668 154 18 26 chr5 124368298 124368411 -28168848 - PB1D9 SINE Alu 0 120 9 1 1533 523 250 81 29 chr5 124368565 124368701 -28168558 + RSINE1 SINE B4 4 146 -19 1 1533 214 261 118 127 chr5 124368729 124368839 -28168420 + B1F1 SINE Alu 1 109 -40 1 1533 229 247 29 136 chr5 124368742 124368845 -28168414 + MT2B2 LTR ERVL 179 270 -314 1 1533 461 175 10 0 chr5 124370299 124370402 -28166857 + GA-rich Low_complexity Low_complexity 1 104 0 1 1533 757 143 55 8 chr5 124370416 124370543 -28166716 - B1_Mus1 SINE Alu -12 136 4 1 1533 379 209 55 37 chr5 124370445 124370554 -28166705 - ID_B1 SINE B4 -38 186 76 1 1533 1062 233 5 5 chr5 124370573 124370789 -28166470 - B3 SINE B2 0 216 1 1 1533 321 253 13 0 chr5 124371056 124371135 -28166124 - RLTR42-int LTR ERVK -1183 4339 4260 1 1533 680 221 29 0 chr5 124371261 124371397 -28165862 + B1_Mus2 SINE Alu 1 140 -7 1 1533 1053 79 50 0 chr5 124371746 124371886 -28165373 + B1_Mus1 SINE Alu 2 148 0 1 1533 305 42 83 0 chr5 124372012 124372060 -28165199 - ID_B1 SINE B4 -69 155 104 1 1533 214 164 164 0 chr5 124372013 124372068 -28165191 - B1F SINE Alu -73 76 13 1 1533 384 268 17 35 chr5 124372379 124372495 -28164764 + PB1D10 SINE Alu 4 117 0 1 1533 499 229 18 0 chr5 124372504 124372613 -28164646 + PB1D9 SINE Alu 1 111 -9 1 1533 720 255 47 5 chr5 124372832 124373025 -28164234 - B3 SINE B2 0 216 16 1 1533 219 211 0 0 chr5 124373060 124373098 -28164161 - ID4_ SINE ID -8 75 38 1 1533 24 0 0 0 chr5 124374130 124374154 -28163105 + AT_rich Low_complexity Low_complexity 1 24 0 1 1533 553 145 242 25 chr5 124374156 124374276 -28162983 + B1_Mm SINE Alu 2 147 0 1 1533 342 295 40 50 chr5 124374278 124374378 -28162881 - RSINE1 SINE B4 0 165 67 1 1533 251 192 333 27 chr5 124374405 124374480 -28162779 - PB1D10 SINE Alu -19 98 1 1 1533 369 273 16 127 chr5 124374495 124374621 -28162638 + L2c LINE L2 3272 3383 -4 1 1533 966 195 71 31 chr5 124375058 124375254 -28162005 - B3 SINE B2 -5 211 8 1 1533 412 262 158 53 chr5 124375276 124375409 -28161850 - B1F SINE Alu -2 147 1 1 1533 719 174 112 15 chr5 124375462 124375596 -28161663 + B1_Mur2 SINE Alu 2 148 -1 1 1533 458 255 98 54 chr5 124375618 124375821 -28161438 - ID_B1 SINE B4 -11 213 2 1 1533 236 301 135 10 chr5 124375923 124376027 -28161232 - PB1D10 SINE Alu 0 117 1 1 1533 576 238 14 7 chr5 124376400 124376544 -28160715 - B1_Mus2 SINE Alu -1 146 2 1 1533 1393 71 16 0 chr5 124376631 124376813 -28160446 + B2_Mm2 SINE B2 1 185 -10 1 1533 262 149 21 0 chr5 124377668 124377715 -28159544 - ID4_ SINE ID -8 75 28 1 1533 1078 116 71 11 chr5 124378643 124378826 -28158433 + B2_Mm2 SINE B2 2 195 0 1 1533 510 212 156 28 chr5 124379020 124379161 -28158098 - B3A SINE B2 -38 160 2 1 1533 381 202 115 80 chr5 124379338 124379451 -28157808 - B1_Mus2 SINE Alu 0 117 1 1 1533 1033 66 0 14 chr5 124379486 124379624 -28157635 - B1_Mus2 SINE Alu 0 147 12 1 1533 473 243 47 106 chr5 124379624 124379651 -28157608 - B4 SINE B4 -64 223 69 1 1533 305 291 116 33 chr5 124379751 124379872 -28157387 - RSINE1 SINE B4 -33 132 2 1 1533 1250 77 6 0 chr5 124380123 124380291 -28156968 + B2_Mm1t SINE B2 3 171 -22 1 1533 29 60 0 0 chr5 124380291 124380341 -28156918 + AT_rich Low_complexity Low_complexity 1 50 0 1 1533 245 253 107 0 chr5 124381327 124381412 -28155847 - B1_Mus2 SINE Alu -50 99 5 1 1533 233 234 90 45 chr5 124381446 124381513 -28155746 + ID4_ SINE ID 14 83 0 1 1533 1231 41 0 20 chr5 124381549 124381699 -28155560 - B1_Mus2 SINE Alu 0 147 1 1 1533 256 210 274 0 chr5 124381706 124381768 -28155491 + B1_Mur2 SINE Alu 58 136 -13 1 1533 524 286 94 30 chr5 124381957 124382159 -28155100 + B3 SINE B2 1 215 -1 1 1533 219 378 51 0 chr5 124382207 124382305 -28154954 - MIR SINE MIR -104 158 56 1 1533 502 203 27 107 chr5 124382308 124382352 -28154907 + MT2B LTR ERVL 122 153 -448 1 1533 844 181 21 7 chr5 124382352 124382497 -28154762 + B1_Mur3 SINE Alu 1 147 -2 1 1533 252 59 0 0 chr5 124382586 124382620 -28154639 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1533 253 257 27 13 chr5 124382718 124382793 -28154466 - B4 SINE B4 -210 82 7 1 1533 828 181 72 36 chr5 124382804 124382970 -28154289 - B3 SINE B2 0 216 45 1 1533 1068 80 66 44 chr5 124383033 124383216 -28154043 + B2_Mm2 SINE B2 3 189 -6 1 1533 632 250 15 8 chr5 124383320 124383453 -28153806 - B1_Mur1 SINE Alu -15 134 1 1 1533 378 0 0 0 chr5 124383637 124383679 -28153580 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1533 341 270 138 4 chr5 124384466 124384631 -28152628 - B3 SINE B2 -17 199 3 1 1533 977 106 12 17 chr5 124384632 124384805 -28152454 + (TTTCC)n Simple_repeat Simple_repeat 5 176 0 1 1533 297 0 0 0 chr5 124384809 124384842 -28152417 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 1 1533 1190 61 0 20 chr5 124384853 124385004 -28152255 - B1_Mus1 SINE Alu 0 148 1 1 1533 509 110 0 12 chr5 124385027 124385110 -28152149 + (TTTC)n Simple_repeat Simple_repeat 2 83 0 1 1533 529 108 0 0 chr5 124385112 124385186 -28152073 - B1_Mur4 SINE Alu 0 150 77 1 1533 836 257 55 0 chr5 124385191 124385393 -28151866 - B3 SINE B2 -1 215 3 1 1533 486 279 54 38 chr5 124385393 124385579 -28151680 - B3A SINE B2 -6 192 4 1 1533 316 320 0 0 chr5 124385619 124385697 -28151562 - ID_B1 SINE B4 -38 186 109 1 1533 344 296 0 0 chr5 124385723 124385804 -28151455 - MER5A1 DNA MER1_type -85 81 1 1 1533 1389 50 33 16 chr5 124386779 124386962 -28150297 - B2_Mm2 SINE B2 -9 186 1 1 1533 216 274 0 31 chr5 124387100 124387164 -28150095 + C-rich Low_complexity Low_complexity 4 65 0 1 1533 504 0 0 0 chr5 124387208 124387264 -28149995 + (TTCTC)n Simple_repeat Simple_repeat 2 57 0 1 1533 294 29 0 0 chr5 124387264 124387298 -28149961 + (TTCC)n Simple_repeat Simple_repeat 2 36 0 1 191 401 264 43 11 chr5 124387304 124387396 -28149863 - B1F1 SINE Alu -54 95 1 1 1534 529 316 59 4 chr5 124387399 124387637 -28149622 - L1MC1 LINE L1 -12 6321 6071 1 1534 694 150 7 86 chr5 124387694 124387833 -28149426 + B1_Mur4 SINE Alu 15 142 -8 1 1534 918 157 14 0 chr5 124388522 124388669 -28148590 + B1_Mur4 SINE Alu 1 149 -1 1 1534 342 301 46 33 chr5 124388745 124388896 -28148363 + Tigger9a DNA Tigger 56 208 -524 1 1534 1225 61 0 0 chr5 124389122 124389269 -28147990 + B1_Mm SINE Alu 1 147 0 1 1534 1924 109 31 22 chr5 124389289 124389608 -28147651 - RLTRETN_Mm LTR ERVK 0 322 1 1 1534 28392 18 3 3 chr5 124389608 124392924 -28144335 - ETnERV-int LTR ERVK 0 3314 1 1 1534 1931 106 31 22 chr5 124392924 124393243 -28144016 - RLTRETN_Mm LTR ERVK 0 322 1 1 1534 187 87 0 61 chr5 124393244 124393293 -28143966 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1 1534 421 259 0 0 chr5 124393380 124393461 -28143798 - ID4_ SINE ID -1 82 2 1 1534 511 212 105 9 chr5 124393480 124393594 -28143665 - B1F1 SINE Alu -20 129 5 1 1534 285 316 113 9 chr5 124393492 124393607 -28143652 - B4 SINE B4 -91 201 75 1 1534 248 83 0 0 chr5 124393821 124393857 -28143402 + B1_Mur4 SINE Alu 115 150 0 1 1534 1198 48 0 13 chr5 124393879 124394028 -28143231 + B1_Mus1 SINE Alu 2 148 0 1 1534 182 120 176 20 chr5 124394636 124394687 -28142572 - L4 LINE RTE -894 1135 1077 1 1534 1116 103 73 17 chr5 124395190 124395367 -28141892 - B2_Mm2 SINE B2 -6 189 3 1 1534 419 311 59 49 chr5 124395675 124395878 -28141381 - MER21B LTR ERV1 -165 698 494 1 1534 190 319 155 26 chr5 124396031 124396263 -28140996 - L2 LINE L2 -451 2968 2707 1 1534 390 279 129 0 chr5 124396732 124396872 -28140387 + ID_B1 SINE B4 1 158 -66 1 1534 1375 80 16 0 chr5 124397992 124398179 -28139080 - B2_Mm1t SINE B2 -2 191 2 1 1534 1021 134 0 26 chr5 124398294 124398447 -28138812 - B1_Mur4 SINE Alu 0 150 2 1 1534 440 286 112 29 chr5 124398484 124398689 -28138570 + ID_B1 SINE B4 1 222 -2 1 1534 314 252 213 57 chr5 124398721 124398752 -28138507 + B1F1 SINE Alu 7 147 -2 1 1534 409 256 0 11 chr5 124398752 124398843 -28138416 + ID_B1 SINE B4 133 222 -2 1 1534 264 193 0 50 chr5 124398856 124398916 -28138343 + ID2 SINE ID 2 58 -25 1 1534 722 279 19 0 chr5 124399554 124399715 -28137544 + ID_B1 SINE B4 58 221 -3 1 1534 372 314 107 28 chr5 124399721 124399937 -28137322 + B4A SINE B4 1 233 -59 1 1534 315 270 220 0 chr5 124399946 124400046 -28137213 + RSINE1 SINE B4 11 132 -33 1 1534 195 42 0 0 chr5 124400059 124400083 -28137176 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1 1534 665 250 43 0 chr5 124400083 124400223 -28137036 + RSINE1 SINE B4 4 149 -16 1 1534 496 223 9 0 chr5 124400297 124400409 -28136850 + Lx9 LINE L1 7365 7477 -167 1 1534 675 229 178 6 chr5 124400471 124400651 -28136608 + B3 SINE B2 2 212 -4 1 1534 248 231 154 0 chr5 124400685 124400776 -28136483 + PB1D10 SINE Alu 2 106 -11 1 1534 503 259 27 0 chr5 124400831 124400943 -28136316 - PB1D10 SINE Alu -2 115 1 1 1534 533 172 113 38 chr5 124401380 124401513 -28135746 - B1_Mus1 SINE Alu -1 147 5 1 1534 393 39 0 0 chr5 124402398 124402449 -28134810 + (CTTG)n Simple_repeat Simple_repeat 2 52 0 1 1534 950 126 14 27 chr5 124402475 124402622 -28134637 - B1_Mur4 SINE Alu 0 150 6 1 1534 507 73 0 0 chr5 124402633 124402701 -28134558 + (TC)n Simple_repeat Simple_repeat 2 69 0 1 1534 528 277 15 8 chr5 124403187 124403318 -28133941 + RSINE1 SINE B4 5 136 -29 1 1534 269 216 78 84 chr5 124403214 124403381 -28133878 + RMER17D LTR ERVK 189 354 -535 1 1534 250 283 185 0 chr5 124403656 124403748 -28133511 + PB1D7 SINE Alu 3 111 -9 1 1534 244 254 33 91 chr5 124405176 124405297 -28131962 + MTC LTR MaLR 226 339 -82 1 1534 254 309 0 36 chr5 124405761 124405845 -28131414 - ID4_ SINE ID -2 81 1 1 1534 324 48 0 0 chr5 124405850 124405892 -28131367 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1534 887 79 91 28 chr5 124405892 124406035 -28131224 - B2_Mm2 SINE B2 -43 152 1 1 1534 264 246 30 15 chr5 124406567 124406633 -28130626 - ID4 SINE ID -16 67 1 1 1534 383 38 19 0 chr5 124406672 124406725 -28130534 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1534 747 237 0 0 chr5 124406727 124406866 -28130393 - RSINE1 SINE B4 -24 141 3 1 1534 520 214 41 0 chr5 124406913 124407011 -28130248 - PB1D9 SINE Alu -2 118 17 1 1534 261 254 254 32 chr5 124407011 124407039 -28130220 - ID_B1 SINE B4 -2 222 69 1 1534 186 43 0 0 chr5 124407048 124407071 -28130188 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1534 1146 122 82 11 chr5 124407092 124407274 -28129985 - B2_Mm2 SINE B2 0 195 1 1 1534 405 157 515 0 chr5 124407631 124407765 -28129494 + B3 SINE B2 5 207 -9 1 1534 963 182 0 0 chr5 124407820 124407968 -28129291 - B1_Mur3 SINE Alu 0 149 2 1 1534 315 0 0 0 chr5 124408033 124408068 -28129191 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1534 313 314 188 46 chr5 124408200 124408323 -28128936 - HAL1-3A_ME LINE L1 -652 2206 2074 1 1534 556 168 72 99 chr5 124408323 124408475 -28128784 - B1_Mus1 SINE Alu 0 148 1 1 1534 313 314 188 46 chr5 124408475 124408548 -28128711 - HAL1-3A_ME LINE L1 -785 2073 1982 1 1534 21 0 0 0 chr5 124408656 124408677 -28128582 + AT_rich Low_complexity Low_complexity 1 21 0 1 1534 683 256 149 73 chr5 124408950 124409292 -28127967 - RLTR9A LTR ERVK 0 368 1 1 1534 213 175 0 0 chr5 124409375 124409415 -28127844 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1534 362 141 134 49 chr5 124409548 124409630 -28127629 - ID_B1 SINE B4 -2 222 134 1 1534 262 235 296 8 chr5 124409770 124409784 -28127475 + B4 SINE B4 82 156 -68 1 1534 485 173 0 58 chr5 124409784 124409870 -28127389 + B1_Mur4 SINE Alu 18 98 -52 1 1534 189 171 0 0 chr5 124409887 124409922 -28127337 + GA-rich Low_complexity Low_complexity 4 38 0 1 1534 501 225 54 17 chr5 124410053 124410183 -28127076 + PB1D7 SINE Alu 9 137 -12 1 1534 345 326 59 0 chr5 124410217 124410352 -28126907 + RSINE1 SINE B4 15 157 -8 1 1534 676 110 0 0 chr5 124410514 124410605 -28126654 + 4.5SRNA scRNA scRNA 1 91 -3 1 1534 582 15 0 0 chr5 124410605 124410672 -28126587 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1534 717 199 55 34 chr5 124410846 124410992 -28126267 - B1F2 SINE Alu 0 149 1 1 1534 369 43 0 0 chr5 124411411 124411458 -28125801 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1534 303 206 111 0 chr5 124411466 124411529 -28125730 - B4 SINE B4 -23 269 200 1 1534 311 246 15 0 chr5 124411522 124411611 -28125648 - B4 SINE B4 -199 93 3 1 1534 1495 62 5 10 chr5 124411947 124412142 -28125117 - B2_Mm2 SINE B2 0 195 2 1 1534 758 168 87 7 chr5 124412179 124412317 -28124942 - B1_Mur1 SINE Alu 0 149 1 1 1534 579 225 6 101 chr5 124412474 124412632 -28124627 - B1_Mur1 SINE Alu -3 146 4 1 1534 188 143 24 0 chr5 124412632 124412674 -28124585 + CT-rich Low_complexity Low_complexity 1 43 0 1 1534 385 286 32 58 chr5 124412674 124412691 -28124568 - ID_B1 SINE B4 0 224 212 1 1534 234 0 0 0 chr5 124412691 124412717 -28124542 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1534 554 195 106 0 chr5 124412717 124412840 -28124419 - B1F2 SINE Alu -13 136 1 1 1534 385 286 32 58 chr5 124412840 124412855 -28124404 - ID_B1 SINE B4 -13 211 73 1 1534 1440 39 79 0 chr5 124413283 124413442 -28123817 + B2_Mm1a SINE B2 2 160 -33 1 1534 207 0 0 0 chr5 124413442 124413465 -28123794 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1534 1440 39 79 0 chr5 124413465 124413483 -28123776 + B2_Mm1a SINE B2 161 191 -2 1 1534 580 259 30 0 chr5 124413586 124413717 -28123542 - RSINE1 SINE B4 -29 136 2 1 1534 801 252 97 34 chr5 124413898 124414165 -28123094 + B4A SINE B4 1 284 -8 1 1534 258 193 0 0 chr5 124414195 124414252 -28123007 + (CACG)n Simple_repeat Simple_repeat 2 58 0 1 1534 300 289 0 11 chr5 124414423 124414514 -28122745 - L1ME2z LINE L1 -465 5979 5890 1 1534 582 287 108 0 chr5 124414693 124414860 -28122399 - B4 SINE B4 -19 273 89 1 1534 675 100 80 26 chr5 124414871 124414984 -28122275 - B1_Mus2 SINE Alu -2 145 27 1 1534 214 294 14 14 chr5 124415316 124415385 -28121874 - MIR3 SINE MIR -15 193 125 1 1534 198 0 0 0 chr5 124415428 124415450 -28121809 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1534 212 263 69 99 chr5 124415624 124415698 -28121561 - B1_Mus1 SINE Alu 0 148 22 1 1534 271 185 0 53 chr5 124415698 124415755 -28121504 - B4 SINE B4 -133 159 106 1 1534 796 149 55 28 chr5 124415770 124415915 -28121344 - B1_Mur4 SINE Alu 0 150 2 1 1534 314 221 14 14 chr5 124416000 124416069 -28121190 + B1_Mur1 SINE Alu 78 146 -3 1 1534 715 212 7 27 chr5 124416096 124416246 -28121013 + B1_Mur2 SINE Alu 1 147 -2 1 1534 240 111 0 0 chr5 124416269 124416305 -28120954 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1534 544 252 14 34 chr5 124416441 124416589 -28120670 + RSINE1 SINE B4 4 148 -17 1 1534 399 41 0 0 chr5 124416591 124416640 -28120619 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1534 21 0 0 0 chr5 124417109 124417130 -28120129 + AT_rich Low_complexity Low_complexity 1 21 0 1 1534 1284 41 0 0 chr5 124417236 124417383 -28119876 - B1_Mus2 SINE Alu 0 147 1 1 1534 612 106 192 0 chr5 124417383 124417487 -28119772 + B1_Mus2 SINE Alu 14 137 -10 1 1534 240 276 184 0 chr5 124417526 124417613 -28119646 + PB1D10 SINE Alu 13 115 -2 1 1534 360 241 0 84 chr5 124417609 124417704 -28119555 + PB1D10 SINE Alu 25 111 -6 1 1534 21 57 0 0 chr5 124418893 124418928 -28118331 + AT_rich Low_complexity Low_complexity 1 35 0 1 1534 971 167 0 0 chr5 124418989 124419139 -28118120 - B1_Mur4 SINE Alu 0 150 1 1 1534 394 217 42 122 chr5 124419609 124419736 -28117523 - B1F1 SINE Alu -63 248 2 1 1534 784 59 261 0 chr5 124420300 124420419 -28116840 + B1_Mur4 SINE Alu 1 150 0 1 1534 259 284 27 81 chr5 124420682 124420793 -28116466 + PB1 SINE Alu 23 127 0 1 1534 324 185 15 30 chr5 124420799 124420866 -28116393 + ID4 SINE ID 2 67 -16 1 1534 404 281 72 20 chr5 124421034 124421203 -28116056 - L2c LINE L2 -207 3180 3002 1 1534 1261 90 20 36 chr5 124421459 124421654 -28115605 + B2_Mm1t SINE B2 2 193 0 1 1534 757 250 32 0 chr5 124421960 124422116 -28115143 - RSINE1 SINE B4 -2 163 3 1 1534 208 292 24 32 chr5 124422690 124422770 -28114489 + MIRb SINE MIR 178 262 0 1 1534 22 35 0 0 chr5 124423569 124423598 -28113661 + GC_rich Low_complexity Low_complexity 1 29 0 1 1534 349 104 0 0 chr5 124424417 124424465 -28112794 - ID_B1 SINE B4 0 224 177 1 1534 324 124 81 5 chr5 124424465 124424485 -28112774 - PB1D10 SINE Alu 0 100 48 1 1534 21 36 0 0 chr5 124424579 124424607 -28112652 + GC_rich Low_complexity Low_complexity 1 28 0 1 1534 539 239 145 0 chr5 124425439 124425556 -28111703 - RSINE1 SINE B4 -29 136 3 1 1534 360 252 34 59 chr5 124426896 124427014 -28110245 + MLT1D LTR MaLR 391 505 0 1 1534 190 235 0 105 chr5 124427015 124427072 -28110187 + L2a LINE L2 3362 3412 -14 1 1534 244 296 77 17 chr5 124427543 124427660 -28109599 - MER33 DNA MER1_type -1 323 200 1 1534 252 288 30 0 chr5 124428043 124428109 -28109150 + ID2 SINE ID 10 77 -6 1 1534 196 293 61 0 chr5 124428271 124428353 -28108906 + L2b LINE L2 3260 3346 -29 1 1534 635 123 127 30 chr5 124428745 124428879 -28108380 - B1_Mur4 SINE Alu -1 149 3 1 1534 330 87 0 0 chr5 124428892 124428938 -28108321 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1534 1217 62 0 0 chr5 124428938 124429084 -28108175 - B1_Mus2 SINE Alu 0 147 2 1 1534 1547 131 0 22 chr5 124429864 124430091 -28107168 - URR1A DNA MER1_type 0 226 5 1 1534 228 183 48 32 chr5 124430964 124431026 -28106233 - Tigger7 DNA MER2_type -1823 668 606 1 1534 738 332 105 44 chr5 124431760 124431818 -28105441 - MER2 DNA MER2_type -2 343 293 1 1534 489 211 105 0 chr5 124431818 124431913 -28105346 + PB1D9 SINE Alu 5 109 -11 1 1534 216 0 0 0 chr5 124431913 124431937 -28105322 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1 1534 738 332 105 44 chr5 124431937 124432192 -28105067 - MER2 DNA MER2_type -53 292 11 1 1534 563 180 80 9 chr5 124432287 124432399 -28104860 + PB1D9 SINE Alu 1 120 0 1 1534 1070 151 0 17 chr5 124432506 124432681 -28104578 - RMER17B LTR ERVK -183 775 604 1 1534 296 167 19 0 chr5 124432689 124432743 -28104516 - RMER17A-int LTR ERVK -1672 56 2 1 1534 6743 87 24 12 chr5 124432744 124433690 -28103569 - RMER17B LTR ERVK 0 958 1 1 1534 306 172 91 30 chr5 124433773 124433839 -28103420 - ID4 SINE ID -11 72 3 1 1534 702 176 85 35 chr5 124434926 124435067 -28102192 + B1_Mur1 SINE Alu 2 149 0 1 1534 510 282 27 27 chr5 124435971 124436117 -28101142 + B1_Mur2 SINE Alu 1 146 -3 1 1534 355 270 191 0 chr5 124436215 124436304 -28100955 + ID_B1 SINE B4 85 190 -34 1 1534 552 42 0 0 chr5 124436314 124436385 -28100874 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1534 452 280 93 0 chr5 124436521 124436639 -28100620 + RLTR18B LTR ERVK 380 508 -4 1 1534 676 254 112 0 chr5 124436645 124436814 -28100445 - B3A SINE B2 -10 188 1 1 1534 198 254 246 33 chr5 124437249 124437371 -28099888 + MIRb SINE MIR 26 173 -95 1 1534 1219 59 98 17 chr5 124438459 124438632 -28098627 + B2_Mm2 SINE B2 2 188 -7 1 1534 512 190 50 0 chr5 124442841 124442941 -28094318 + B1F SINE Alu 37 141 -8 1 1534 536 144 141 20 chr5 124442982 124443081 -28094178 + B3 SINE B2 100 210 -6 1 1534 360 321 0 12 chr5 124443106 124443191 -28094068 + B1_Mus2 SINE Alu 3 86 -61 1 1534 210 231 0 0 chr5 124443265 124443304 -28093955 + polypurine Low_complexity Low_complexity 1 39 0 1 1534 835 228 76 5 chr5 124443798 124443912 -28093347 - B3 SINE B2 -18 198 75 1 1534 378 0 0 0 chr5 124443912 124443954 -28093305 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1534 835 228 76 5 chr5 124443954 124444024 -28093235 - B3 SINE B2 -142 74 2 1 1534 419 229 73 9 chr5 124444024 124444134 -28093125 - PB1D10 SINE Alu 0 117 1 1 1534 401 231 220 15 chr5 124444177 124444309 -28092950 - RSINE1 SINE B4 -1 164 6 1 1534 684 96 17 9 chr5 124444936 124445052 -28092207 + (GA)n Simple_repeat Simple_repeat 1 117 0 1 1534 425 179 16 104 chr5 124445150 124445174 -28092085 + ID SINE ID 65 77 -147 1 1534 674 108 0 19 chr5 124445174 124445278 -28091981 + B1_Mus1 SINE Alu 1 102 -46 1 1534 552 78 7 12 chr5 124445315 124445410 -28091849 + B1_Mur4 SINE Alu 49 150 0 1 1534 321 143 0 0 chr5 124448256 124448312 -28088947 - PB1D7 SINE Alu -35 85 30 1 1534 302 259 0 0 chr5 124448338 124448396 -28088863 - L1M4 LINE L1 -744 5440 5383 1 1534 519 184 10 0 chr5 124448441 124448539 -28088720 - RSINE1 SINE B4 -39 126 28 1 1534 180 0 0 0 chr5 124453801 124453821 -28083438 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1534 1145 45 0 0 chr5 124453821 124453955 -28083304 - B1_Mm SINE Alu -13 134 1 1 1534 224 289 0 0 chr5 124458248 124458300 -28078959 + B3A SINE B2 47 98 -100 1 1534 222 37 0 0 chr5 124458594 124458621 -28078638 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1534 719 147 47 0 chr5 124458919 124459048 -28078211 - B1_Mur4 SINE Alu -7 143 9 1 1534 416 276 58 70 chr5 124459048 124459071 -28078188 - B4 SINE B4 -69 219 70 1 1534 363 269 85 2 chr5 124459050 124459206 -28078053 - B3A SINE B2 -16 179 2 1 1534 447 184 22 6 chr5 124459206 124459312 -28077947 - PB1D9 SINE Alu -13 136 32 1 1534 1207 68 0 0 chr5 124459383 124459530 -28077729 + B1_Mus1 SINE Alu 2 148 0 1 1534 610 235 203 16 chr5 124459558 124459740 -28077519 - B3 SINE B2 0 216 1 1 1534 237 33 0 0 chr5 124459759 124459789 -28077470 + (TCTCTG)n Simple_repeat Simple_repeat 1 30 0 1 1534 291 241 155 12 chr5 124459863 124459947 -28077312 + ID_B1 SINE B4 100 195 -29 1 1534 236 173 0 227 chr5 124459947 124459960 -28077299 + PB1D10 SINE Alu 19 93 -24 1 1534 339 179 35 7 chr5 124460007 124460148 -28077111 + (CA)n Simple_repeat Simple_repeat 1 145 0 1 1534 660 143 138 32 chr5 124460524 124460647 -28076612 - B1_Mus1 SINE Alu -10 138 3 1 1534 461 310 96 28 chr5 124462324 124462573 -28074686 + L1MD1 LINE L1 5557 5822 -537 1 1534 980 84 70 0 chr5 124462579 124462722 -28074537 + B2_Mm2 SINE B2 1 153 -42 1 1534 306 281 28 37 chr5 124462918 124463025 -28074234 + L1MD1 LINE L1 6065 6170 -72 1 1534 410 286 0 19 chr5 124463205 124463312 -28073947 - PB1D10 SINE Alu -8 109 5 1 1534 237 260 13 27 chr5 124464249 124464324 -28072935 + ID4 SINE ID 5 78 -5 1 1534 205 214 65 91 chr5 124464355 124464432 -28072827 + MER5B DNA MER1_type 103 177 -1 1 1534 326 188 98 10 chr5 124465044 124465146 -28072113 + HAL1b LINE L1 1621 1731 -278 1 1534 973 62 131 0 chr5 124465479 124465609 -28071650 + B1_Mus2 SINE Alu 1 147 0 1 1534 347 260 19 28 chr5 124465678 124465785 -28071474 + B4A SINE B4 101 206 -86 1 1534 854 77 84 8 chr5 124466182 124466313 -28070946 - B1_Mus2 SINE Alu -6 141 1 1 1534 198 0 0 0 chr5 124466991 124467013 -28070246 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1534 387 286 61 7 chr5 124467067 124467215 -28070044 + Lx9 LINE L1 7283 7438 -206 1 1534 210 71 0 0 chr5 124467218 124467246 -28070013 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1534 261 227 71 26 chr5 124467248 124467361 -28069898 + Lx9 LINE L1 7512 7629 -15 1 1534 183 129 0 0 chr5 124467435 124467466 -28069793 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1 1534 216 0 0 0 chr5 124467906 124467930 -28069329 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 1 1534 540 235 8 63 chr5 124468321 124468448 -28068811 + PB1D7 SINE Alu 1 120 0 1 1534 246 95 0 0 chr5 124468471 124468513 -28068746 + (CAAT)n Simple_repeat Simple_repeat 2 43 0 1 1534 606 230 112 26 chr5 124469053 124469205 -28068054 - RSINE1 SINE B4 0 165 1 1 1534 262 250 19 115 chr5 124469578 124469599 -28067660 + MT2B LTR ERVL 147 157 -444 1 1534 708 214 13 33 chr5 124469599 124469749 -28067510 + B1_Mur4 SINE Alu 3 149 -1 1 1534 378 74 0 0 chr5 124470307 124470361 -28066898 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1534 273 200 14 28 chr5 124470478 124470550 -28066709 - PB1D10 SINE Alu 0 117 47 1 1534 313 217 319 120 chr5 124470635 124470876 -28066383 - B4 SINE B4 0 292 4 1 1534 207 0 0 0 chr5 124470919 124470942 -28066317 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1534 1002 204 73 15 chr5 124470944 124471148 -28066111 - B3 SINE B2 0 216 1 1 1534 820 74 0 55 chr5 124471507 124471635 -28065624 - B1_Mur4 SINE Alu -3 147 27 1 1534 240 212 90 15 chr5 124471665 124471732 -28065527 - B1F SINE Alu -77 72 1 1 1534 201 237 0 0 chr5 124471764 124471823 -28065436 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1534 418 244 138 0 chr5 124471897 124472020 -28065239 - RSINE1 SINE B4 -23 142 3 1 1534 363 268 45 0 chr5 124472209 124472321 -28064938 - PB1 SINE Alu -2 125 9 1 1534 275 286 36 0 chr5 124473239 124473323 -28063936 + RSINE1 SINE B4 38 124 -41 1 1534 271 292 20 30 chr5 124473879 124473978 -28063281 + YREP_Mm Unknown Unknown 196 293 -1519 1 1534 421 279 39 8 chr5 124473889 124474019 -28063240 - ID_B1 SINE B4 -31 193 60 1 1534 225 167 80 40 chr5 124474306 124474356 -28062903 + PB1 SINE Alu 63 114 -13 1 1534 241 322 65 24 chr5 124474945 124475069 -28062190 + L2b LINE L2 3034 3162 -213 1 1534 344 281 0 0 chr5 124475168 124475250 -28062009 + ID4_ SINE ID 1 82 -1 1 1534 201 74 0 0 chr5 124475637 124475664 -28061595 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1534 513 231 47 47 chr5 124475665 124475792 -28061467 + B1_Mur1 SINE Alu 2 128 -21 1 1534 1151 83 0 0 chr5 124477091 124477236 -28060023 + B1_Mus1 SINE Alu 3 147 -1 1 1534 423 0 0 0 chr5 124477248 124477295 -28059964 + (GAAA)n Simple_repeat Simple_repeat 3 49 0 1 1534 789 194 0 0 chr5 124477305 124477434 -28059825 + B1_Mur2 SINE Alu 3 131 -18 1 1534 378 0 0 0 chr5 124477506 124477548 -28059711 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1534 285 29 0 0 chr5 124477548 124477581 -28059678 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1534 1097 204 18 13 chr5 124478024 124478248 -28059011 - URR1B DNA MER1_type 0 225 1 1 1534 268 324 14 48 chr5 124478271 124478417 -28058842 + RSINE1 SINE B4 15 155 -10 1 1534 493 167 250 0 chr5 124478427 124478535 -28058724 + B1_Mm SINE Alu 1 135 -12 1 1534 24 0 0 0 chr5 124479023 124479047 -28058212 + AT_rich Low_complexity Low_complexity 1 24 0 1 1534 892 185 47 47 chr5 124479088 124479281 -28057978 - B2_Mm2 SINE B2 -1 194 2 1 1534 766 244 56 30 chr5 124479341 124479573 -28057686 - B4 SINE B4 -54 238 1 1 1534 222 328 141 39 chr5 124479576 124479782 -28057477 - MIRb SINE MIR -8 260 34 1 1534 258 32 0 0 chr5 124480148 124480179 -28057080 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1534 982 139 7 0 chr5 124480237 124480381 -28056878 + B1_Mus2 SINE Alu 1 145 -2 1 1534 183 80 0 0 chr5 124481030 124481055 -28056204 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1534 285 132 0 36 chr5 124482590 124482645 -28054614 + B1F1 SINE Alu 94 146 -3 1 1534 666 204 29 0 chr5 124482789 124482926 -28054333 - B3A SINE B2 -57 141 1 1 1534 402 236 203 39 chr5 124482937 124483065 -28054194 - B1F SINE Alu 0 149 1 1 1534 1225 35 14 0 chr5 124483490 124483634 -28053625 + B1_Mm SINE Alu 2 147 0 1 1534 221 0 35 0 chr5 124483634 124483663 -28053596 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 1 1534 235 154 0 0 chr5 124484464 124484503 -28052756 + ID_B1 SINE B4 181 219 -5 1 1534 294 29 0 0 chr5 124484903 124484938 -28052321 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1534 1146 51 0 0 chr5 124485120 124485257 -28052002 + B1_Mus2 SINE Alu 2 138 -9 1 1534 510 312 29 7 chr5 124485353 124485492 -28051767 + B1F SINE Alu 1 142 -7 1 1534 510 155 3 25 chr5 124485883 124485995 -28051264 - B1F1 SINE Alu 0 120 9 1 1534 627 286 65 0 chr5 124486028 124486213 -28051046 - B3A SINE B2 0 198 2 1 1534 216 308 51 13 chr5 124486613 124486692 -28050567 - B4 SINE B4 -204 88 7 1 1534 572 116 0 10 chr5 124486704 124486800 -28050459 + (TCCC)n Simple_repeat Simple_repeat 1 95 0 1 1534 282 284 49 0 chr5 124486800 124486881 -28050378 - B1_Mur3 SINE Alu -1 148 64 1 1534 225 0 0 0 chr5 124487082 124487107 -28050152 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1534 1053 204 48 0 chr5 124487228 124487434 -28049825 + B3 SINE B2 1 216 0 1 1534 578 139 204 0 chr5 124487447 124487555 -28049704 + B1_Mur3 SINE Alu 11 140 -9 1 1534 263 218 34 22 chr5 124487655 124487744 -28049515 + L1M2 LINE L1 5492 5581 -719 1 1534 311 250 9 91 chr5 124487783 124487893 -28049366 + L1M2 LINE L1 5680 5780 -520 1 1534 790 266 63 5 chr5 124487902 124488091 -28049168 + ID_B1 SINE B4 3 202 -22 1 1534 192 112 43 53 chr5 124488134 124488215 -28049044 + T-rich Low_complexity Low_complexity 14 93 0 1 1534 1204 48 0 20 chr5 124488215 124488365 -28048894 - B1_Mus2 SINE Alu 0 147 1 1 1534 192 112 43 53 chr5 124488365 124488377 -28048882 + T-rich Low_complexity Low_complexity 2 13 0 1 1534 315 266 130 23 chr5 124488386 124488517 -28048742 + B4 SINE B4 73 217 -75 1 1534 570 183 139 16 chr5 124488402 124488524 -28048735 + B1F SINE Alu 9 145 -4 1 1534 516 198 34 25 chr5 124488695 124488814 -28048445 - PB1D7 SINE Alu 0 120 1 1 1534 611 238 179 0 chr5 124488940 124489108 -28048151 - B3A SINE B2 0 198 1 1 1534 1239 54 0 0 chr5 124489273 124489420 -28047839 - B1_Mus1 SINE Alu 0 148 2 1 1534 993 151 200 6 chr5 124489425 124489605 -28047654 - B3 SINE B2 0 216 2 1 1534 198 0 0 0 chr5 124489627 124489649 -28047610 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1534 473 250 39 0 chr5 124489810 124489914 -28047345 - PB1D7 SINE Alu -10 110 3 1 1534 352 350 0 0 chr5 124489940 124490037 -28047222 - B1F2 SINE Alu -51 98 2 1 1534 210 310 0 66 chr5 124489974 124490050 -28047209 - B4 SINE B4 -143 149 79 1 1534 286 296 53 53 chr5 124490053 124490242 -28047017 - L1MC3 LINE L1 -30 7755 7567 1 1534 287 272 12 12 chr5 124490387 124490469 -28046790 + PB1D7 SINE Alu 34 115 -5 1 1534 553 236 166 27 chr5 124490530 124490717 -28046542 - ID_B1 SINE B4 -9 215 3 1 1534 1171 68 0 7 chr5 124490747 124490894 -28046365 - B1_Mus2 SINE Alu -1 146 1 1 1534 246 181 167 0 chr5 124490945 124491017 -28046242 - B3 SINE B2 -128 88 5 1 1534 317 286 114 18 chr5 124491039 124491153 -28046106 - PB1 SINE Alu -2 125 1 1 1534 235 315 41 52 chr5 124491556 124491653 -28045606 + PB1D10 SINE Alu 21 116 -1 1 1534 299 319 175 15 chr5 124491653 124491790 -28045469 + RSINE1 SINE B4 4 162 -3 1 1534 1250 27 0 7 chr5 124491818 124491955 -28045304 + B1_Mus1 SINE Alu 1 137 -11 1 1534 243 0 0 0 chr5 124491955 124491982 -28045277 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1534 504 32 0 0 chr5 124492059 124492121 -28045138 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1534 191 299 140 0 chr5 124492277 124492384 -28044875 - L2b LINE L2 -20 3355 3234 1 1534 539 270 54 65 chr5 124492396 124492582 -28044677 + B3A SINE B2 11 194 -4 1 1534 1047 72 58 0 chr5 124492694 124492832 -28044427 - B1_Mus2 SINE Alu 0 147 2 1 1534 592 178 9 18 chr5 124492836 124492945 -28044314 + B1_Mm SINE Alu 18 125 -22 1 1534 639 227 8 0 chr5 124492945 124493064 -28044195 - B1_Mur1 SINE Alu -27 122 3 1 1534 235 350 0 88 chr5 124492963 124493068 -28044191 - MT2B LTR ERVL -344 257 163 1 1534 363 44 0 0 chr5 124493068 124493113 -28044146 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1534 429 221 0 0 chr5 124493140 124493226 -28044033 - B1F2 SINE Alu 0 149 64 1 1534 251 93 0 23 chr5 124493996 124494040 -28043219 + (TCTG)n Simple_repeat Simple_repeat 1 43 0 1 1534 807 208 40 68 chr5 124494112 124494248 -28043011 - B3 SINE B2 0 216 81 1 1534 3210 68 0 5 chr5 124494248 124494646 -28042613 + MTA_Mm LTR MaLR 1 396 0 1 1534 807 208 40 68 chr5 124494646 124494731 -28042528 - B3 SINE B2 -136 80 1 1 1534 587 133 9 0 chr5 124494736 124494841 -28042418 + (TC)n Simple_repeat Simple_repeat 1 106 0 1 1534 633 161 18 18 chr5 124494846 124494960 -28042299 - B1_Mur3 SINE Alu -35 114 1 1 1534 697 238 151 0 chr5 124494986 124495171 -28042088 + ID_B1 SINE B4 11 223 -1 1 1534 23 54 0 0 chr5 124496085 124496122 -28041137 + AT_rich Low_complexity Low_complexity 1 37 0 1 1534 252 0 0 0 chr5 124496128 124496156 -28041103 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1534 440 72 14 0 chr5 124496162 124496231 -28041028 + (TG)n Simple_repeat Simple_repeat 2 71 0 1 1534 237 388 41 0 chr5 124496290 124496388 -28040871 - ID_B1 SINE B4 -33 191 90 1 1534 270 301 14 0 chr5 124496396 124496469 -28040790 - B1F1 SINE Alu -29 120 47 1 1534 285 158 13 38 chr5 124496509 124496588 -28040671 + CT-rich Low_complexity Low_complexity 4 80 0 1 1534 218 261 185 0 chr5 124496605 124496670 -28040589 - ID4 SINE ID -6 77 1 1 1534 444 211 152 30 chr5 124496692 124496824 -28040435 - B1_Mur1 SINE Alu 0 149 2 1 1534 292 303 71 58 chr5 124497043 124497267 -28039992 - L2b LINE L2 -239 3136 2910 1 1534 303 240 68 29 chr5 124497352 124497455 -28039804 + L1MC3 LINE L1 7124 7230 -555 1 1534 401 248 37 0 chr5 124497475 124497584 -28039675 - ID_B1 SINE B4 -3 221 109 1 1534 939 272 5 0 chr5 124497811 124498013 -28039246 + ID_B1 SINE B4 9 211 -13 1 1534 308 366 10 45 chr5 124497887 124498087 -28039172 - YREP_Mm Unknown Unknown -1501 311 119 1 1534 285 302 67 0 chr5 124498246 124498365 -28038894 + B4A SINE B4 1 127 -165 1 1534 266 295 22 11 chr5 124498595 124498684 -28038575 + L1MC3 LINE L1 7686 7775 -10 1 1534 185 0 40 0 chr5 124498749 124498774 -28038485 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1534 1246 27 7 7 chr5 124498778 124498925 -28038334 - B1_Mus1 SINE Alu 0 148 2 1 1534 514 298 41 6 chr5 124498925 124499097 -28038162 + B4A SINE B4 68 245 -47 1 1534 1081 94 6 6 chr5 124499101 124499261 -28037998 + B2_Mm1a SINE B2 1 160 -33 1 1534 228 67 0 0 chr5 124499261 124499291 -28037968 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 1534 225 321 115 9 chr5 124499295 124499408 -28037851 + RSINE1 SINE B4 11 135 -30 1 1534 396 97 0 0 chr5 124499409 124499471 -28037788 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1534 255 338 0 13 chr5 124499481 124499559 -28037700 + B4A SINE B4 216 292 0 1 1534 187 103 51 0 chr5 124500930 124500969 -28036290 + CT-rich Low_complexity Low_complexity 2 42 0 1 1534 437 236 98 45 chr5 124500970 124501103 -28036156 - B1F2 SINE Alu -2 147 8 2 1534 261 274 94 0 chr5 124501259 124501365 -28035894 - L1MB5 LINE L1 -151 6023 5908 3 1534 282 215 62 25 chr5 124501367 124501448 -28035811 + PB1 SINE Alu 44 127 0 4 1534 298 224 0 126 chr5 124501453 124501540 -28035719 + MT2B LTR ERVL 164 239 -362 5 1534 688 159 46 31 chr5 124501463 124501593 -28035666 + B1_Mur4 SINE Alu 9 140 -10 6 1534 225 0 0 0 chr5 124501593 124501618 -28035641 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1534 233 174 0 0 chr5 124501618 124501664 -28035595 + BC1_Mm scRNA scRNA 33 78 -74 8 1534 207 170 64 0 chr5 124501681 124501728 -28035531 + G-rich Low_complexity Low_complexity 5 54 0 9 1534 234 325 78 0 chr5 124501890 124501967 -28035292 - L1M5 LINE L1 -483 5696 5614 1 1534 208 222 132 11 chr5 124501974 124502065 -28035194 + L2b LINE L2 3048 3149 -226 1 1534 230 261 0 0 chr5 124502169 124502215 -28035044 + L2b LINE L2 3328 3373 -2 1 1534 687 57 0 0 chr5 124502579 124502667 -28034592 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 1 1534 1205 56 0 0 chr5 124502667 124502810 -28034449 - B1_Mm SINE Alu -3 144 2 1 1534 476 311 15 29 chr5 124502912 124503048 -28034211 + RSINE1 SINE B4 29 162 -3 1 1534 420 229 129 58 chr5 124503098 124503237 -28034022 + B1F2 SINE Alu 1 149 0 1 1534 614 234 96 86 chr5 124503328 124503548 -28033711 - ID_B1 SINE B4 -2 222 1 1 1534 1199 68 0 0 chr5 124504115 124504261 -28032998 + B1_Mm SINE Alu 2 147 0 1 1534 332 245 0 109 chr5 124504318 124504428 -28032831 - RSINE1 SINE B4 -67 98 1 1 1534 788 71 18 0 chr5 124504458 124504570 -28032689 - B1_Mus2 SINE Alu -32 115 2 1 1534 637 247 57 40 chr5 124504570 124504632 -28032627 - B4 SINE B4 -80 209 33 2 1534 480 198 137 24 chr5 124504774 124504898 -28032361 - B1F SINE Alu -1 148 11 2 1534 400 245 0 41 chr5 124504955 124505053 -28032206 + URR1A DNA MER1_type 1 94 -132 2 1534 213 226 0 0 chr5 124505054 124505107 -28032152 + T-rich Low_complexity Low_complexity 1 53 0 2 1534 1251 48 0 0 chr5 124505109 124505255 -28032004 - B1_Mus1 SINE Alu -1 147 2 2 1534 792 124 66 0 chr5 124505257 124505394 -28031865 + URR1A DNA MER1_type 81 226 0 2 1534 261 172 121 0 chr5 124505701 124505759 -28031500 - B1F2 SINE Alu -54 95 31 2 1534 342 0 0 0 chr5 124505760 124505798 -28031461 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1534 520 218 29 43 chr5 124505798 124505937 -28031322 - RSINE1 SINE B4 -26 139 3 2 1534 1343 117 16 0 chr5 124505946 124506134 -28031125 - B2_Mm2 SINE B2 -2 193 3 2 1534 701 228 194 0 chr5 124506172 124506352 -28030907 - B3 SINE B2 0 216 2 2 1534 924 191 46 41 chr5 124506364 124506560 -28030699 - B3A SINE B2 -1 197 1 3 1534 404 255 31 0 chr5 124506673 124506771 -28030488 - ID_B1 SINE B4 -2 222 122 3 1534 277 331 18 139 chr5 124506771 124506835 -28030424 - B1F2 SINE Alu -2 144 3 3 1534 401 143 155 0 chr5 124507312 124507396 -28029863 + PB1D10 SINE Alu 21 117 0 3 1534 219 140 0 0 chr5 124507469 124507519 -28029740 + (T)n Simple_repeat Simple_repeat 1 50 0 3 1534 1280 34 0 0 chr5 124507519 124507666 -28029593 - B1_Mus2 SINE Alu 0 147 1 3 1534 814 216 96 11 chr5 124508007 124508194 -28029065 - B3 SINE B2 -13 203 1 3 1534 533 229 0 37 chr5 124508368 124508477 -28028782 + PB1D7 SINE Alu 4 108 -12 3 1534 538 192 225 0 chr5 124508480 124508600 -28028659 + B1_Mus2 SINE Alu 1 147 0 3 1534 213 103 0 0 chr5 124508610 124508629 -28028630 + (A)n Simple_repeat Simple_repeat 1 19 0 3 1534 1226 68 0 0 chr5 124508629 124508776 -28028483 + B1_Mus2 SINE Alu 1 147 0 4 1534 213 103 0 0 chr5 124508776 124508795 -28028464 + (A)n Simple_repeat Simple_repeat 1 19 0 4 1534 1450 242 80 8 chr5 124508827 124509227 -28028032 + L1MB7 LINE L1 5648 6076 -108 4 1534 528 337 144 19 chr5 124510293 124510605 -28026654 + MLT1D LTR MaLR 1 351 -154 4 1534 186 173 32 30 chr5 124510737 124510796 -28026463 - MIRm SINE MIR -94 174 118 4 1534 417 202 28 30 chr5 124510950 124511063 -28026196 + MTD LTR MaLR 1 120 -259 4 1534 619 253 35 23 chr5 124511105 124511140 -28026119 + ID_B1 SINE B4 49 223 0 4 1534 884 130 7 0 chr5 124511140 124511278 -28025981 + B1_Mm SINE Alu 9 147 0 4 1534 379 306 59 53 chr5 124513281 124513433 -28023826 - RSINE1 SINE B4 -9 156 4 4 1534 373 355 83 5 chr5 124514165 124514383 -28022876 + MER67B LTR ERV1 125 359 -302 4 1534 275 376 7 21 chr5 124514650 124514794 -28022465 + L2a LINE L2 3272 3413 -13 5 1534 548 224 50 121 chr5 124514862 124515060 -28022199 + RMER5 LTR ERV1 13 196 -338 5 1534 396 148 145 24 chr5 124515116 124515199 -28022060 + RMER5 LTR ERV1 401 493 -41 5 1534 392 198 27 0 chr5 124515577 124515662 -28021597 - PB1D9 SINE Alu -227 87 1 5 1534 249 212 42 105 chr5 124515581 124515676 -28021583 - MT2B LTR ERVL -360 241 153 5 1534 1051 192 59 5 chr5 124516006 124516210 -28021049 + B3 SINE B2 1 215 -1 5 1534 984 82 0 0 chr5 124516352 124516487 -28020772 + B1_Mus1 SINE Alu 14 148 0 5 1534 354 138 0 0 chr5 124516487 124516545 -28020714 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 5 1534 757 55 0 9 chr5 124517229 124517339 -28019920 - B1_Mus1 SINE Alu 0 148 40 5 1534 33 43 0 0 chr5 124517347 124517394 -28019865 + AT_rich Low_complexity Low_complexity 1 47 0 5 1534 462 236 122 0 chr5 124517394 124517517 -28019742 - B3A SINE B2 -52 146 9 5 1534 1123 89 7 0 chr5 124517651 124517797 -28019462 - B1_Mus1 SINE Alu 0 148 2 6 1534 25 0 0 0 chr5 124517828 124517853 -28019406 + AT_rich Low_complexity Low_complexity 1 25 0 6 1534 271 303 45 0 chr5 124517872 124517961 -28019298 + B4A SINE B4 77 169 -123 6 1534 507 178 19 9 chr5 124517889 124517997 -28019262 + PB1D9 SINE Alu 11 119 -1 6 1534 23 33 0 0 chr5 124518081 124518111 -28019148 + AT_rich Low_complexity Low_complexity 1 30 0 6 1534 1347 104 22 0 chr5 124518146 124518329 -28018930 - B2_Mm2 SINE B2 -7 188 2 6 1535 446 196 72 0 chr5 124518499 124518596 -28018663 + PB1D9 SINE Alu 11 114 -6 6 1535 1229 62 0 0 chr5 124518784 124518930 -28018329 - B1_Mus2 SINE Alu 0 147 2 6 1535 511 237 66 15 chr5 124519034 124519171 -28018088 + B1_Mus2 SINE Alu 3 146 -1 6 1535 252 0 0 0 chr5 124519183 124519211 -28018048 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1535 354 204 0 0 chr5 124519211 124519304 -28017955 + (TA)n Simple_repeat Simple_repeat 2 94 0 7 1535 733 197 46 66 chr5 124519304 124519500 -28017759 - B3 SINE B2 -2 214 23 7 1535 276 262 9 104 chr5 124519488 124519603 -28017656 + B2_Mm2 SINE B2 83 186 -9 7 1535 437 151 0 0 chr5 124520589 124520662 -28016597 - B1_Mus1 SINE Alu -72 76 4 7 1535 396 0 0 0 chr5 124520844 124520888 -28016371 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1535 1263 230 74 25 chr5 124520939 124521305 -28015954 + RMER5 LTR ERV1 151 534 0 7 1535 276 175 0 0 chr5 124521628 124521691 -28015568 + C-rich Low_complexity Low_complexity 1 63 0 7 1535 289 314 29 0 chr5 124522529 124522634 -28014625 + PB1D10 SINE Alu 3 110 -7 7 1535 359 235 86 86 chr5 124522646 124522809 -28014450 + RSINE1 SINE B4 3 165 0 7 1535 1411 86 16 0 chr5 124522926 124523113 -28014146 + B2_Mm2 SINE B2 1 190 -5 7 1535 824 171 63 11 chr5 124523115 124523304 -28013955 - B3 SINE B2 -9 207 9 8 1535 582 130 23 7 chr5 124523321 124523430 -28013829 - B1_Mus2 SINE Alu 0 147 3 8 1535 1237 48 7 0 chr5 124524147 124524294 -28012965 - B1_Mus1 SINE Alu 0 148 1 8 1535 559 212 8 17 chr5 124524304 124524424 -28012835 - B1F SINE Alu -5 144 26 8 1535 233 283 52 111 chr5 124524305 124524440 -28012819 - B4 SINE B4 -72 220 94 8 1535 279 0 0 0 chr5 124524711 124524742 -28012517 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1535 303 28 0 0 chr5 124524742 124524778 -28012481 + (GA)n Simple_repeat Simple_repeat 1 36 0 8 1535 402 21 0 0 chr5 124524778 124524825 -28012434 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 8 1535 189 74 0 0 chr5 124525316 124525343 -28011916 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1535 312 70 0 0 chr5 124525480 124525523 -28011736 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1535 374 208 0 13 chr5 124526332 124526410 -28010849 - ID4 SINE ID 0 83 7 9 1535 256 269 26 69 chr5 124526522 124526638 -28010621 - B1F SINE Alu -38 111 1 9 1535 712 168 0 22 chr5 124527648 124527782 -28009477 - B1_Mur2 SINE Alu -3 146 16 9 1535 264 241 120 77 chr5 124527813 124527847 -28009412 - B1_Mur2 SINE Alu -9 140 19 9 1535 273 225 24 36 chr5 124527847 124527930 -28009329 - MT2B2 LTR ERVL -320 264 183 9 1535 283 272 120 0 chr5 124528118 124528243 -28009016 - ID_B1 SINE B4 -83 141 2 9 1535 195 283 148 16 chr5 124529303 124529425 -28007834 - MIRc SINE MIR -97 171 34 9 1535 243 88 0 0 chr5 124530794 124530828 -28006431 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1535 294 287 0 73 chr5 124530858 124530967 -28006292 - RSINE1 SINE B4 -49 116 16 9 1535 244 270 93 23 chr5 124531487 124531616 -28005643 + L2 LINE L2 2936 3073 -346 9 1535 787 288 60 14 chr5 124533842 124534127 -28003132 + MTE2b LTR MaLR 18 315 -64 1 1535 255 304 178 12 chr5 124535487 124535650 -28001609 + L2a LINE L2 2951 3140 -286 1 1535 240 268 14 27 chr5 124535798 124535871 -28001388 + PB1D10 SINE Alu 37 108 -9 1 1535 416 266 54 18 chr5 124535876 124535987 -28001272 + PB1D10 SINE Alu 1 115 -2 1 1535 673 227 53 13 chr5 124536014 124536229 -28001030 + B4A SINE B4 24 286 -6 1 1535 445 223 116 62 chr5 124536287 124536416 -28000843 + RSINE1 SINE B4 3 138 -27 1 1535 1189 70 0 0 chr5 124536419 124536562 -28000697 + B1_Mus2 SINE Alu 5 147 0 1 1535 204 40 0 0 chr5 124536562 124536587 -28000672 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1535 258 200 20 0 chr5 124536680 124536730 -28000529 + B1_Mur1 SINE Alu 99 149 0 1 1535 476 122 0 85 chr5 124536750 124536851 -28000408 + B1_Mur4 SINE Alu 6 95 -55 1 1535 198 314 69 54 chr5 124537644 124537759 -27999500 - MIR SINE MIR -68 200 81 1 1535 247 123 0 81 chr5 124537761 124537792 -27999467 + T-rich Low_complexity Low_complexity 28 58 0 1 1535 1260 48 0 0 chr5 124537792 124537939 -27999320 - B1_Mm SINE Alu 0 147 1 1 1535 247 123 0 81 chr5 124537939 124537969 -27999290 + T-rich Low_complexity Low_complexity 2 27 0 1 1535 265 277 0 0 chr5 124538171 124538236 -27999023 - MIRc SINE MIR -121 147 83 1 1535 686 232 82 0 chr5 124538630 124538824 -27998435 + B4A SINE B4 83 292 0 1 1535 258 32 0 0 chr5 124538966 124538997 -27998262 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 1 1535 1178 50 0 0 chr5 124538998 124539137 -27998122 - B1_Mus1 SINE Alu -9 139 1 1 1535 1307 119 10 5 chr5 124539137 124539331 -27997928 - B2_Mm2 SINE B2 0 195 1 1 1535 384 277 26 26 chr5 124539335 124539450 -27997809 - PB1D7 SINE Alu -1 119 5 1 1535 244 246 0 122 chr5 124540427 124540462 -27996797 + ID SINE ID 53 84 -140 1 1535 320 267 0 130 chr5 124540462 124540600 -27996659 + PB1D7 SINE Alu 1 120 0 1 1535 244 246 0 122 chr5 124540600 124540638 -27996621 + ID_B1 SINE B4 85 117 -107 1 1535 263 203 12 183 chr5 124540603 124540772 -27996487 + B1_Mur1 SINE Alu 2 141 -8 1 1535 471 185 95 7 chr5 124540663 124540794 -27996465 + B4A SINE B4 104 241 -51 1 1535 335 271 46 8 chr5 124540793 124540923 -27996336 + B3 SINE B2 81 215 -1 1 1535 898 246 23 42 chr5 124541059 124541275 -27995984 + B3 SINE B2 1 212 -4 1 1535 1132 98 6 6 chr5 124541291 124541450 -27995809 + B2_Mm1a SINE B2 1 160 -33 1 1535 225 0 0 0 chr5 124541450 124541475 -27995784 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1 1535 1132 98 6 6 chr5 124541475 124541489 -27995770 + B2_Mm1a SINE B2 161 174 -19 1 1535 309 220 53 42 chr5 124541589 124541684 -27995575 + PB1D10 SINE Alu 21 116 -1 1 1535 315 0 0 0 chr5 124541749 124541784 -27995475 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1535 214 191 21 0 chr5 124541788 124541835 -27995424 + GA-rich Low_complexity Low_complexity 1 48 0 1 1535 232 315 45 0 chr5 124542655 124542744 -27994515 - MIR SINE MIR -95 167 75 1 1535 356 349 57 17 chr5 124542822 124542997 -27994262 - MIR SINE MIR -17 245 64 1 1535 324 304 0 21 chr5 124543156 124543250 -27994009 - MIRc SINE MIR -117 151 60 1 1535 412 212 0 0 chr5 124544559 124544639 -27992620 - ID4_ SINE ID 0 83 4 1 1535 495 0 0 0 chr5 124544899 124544954 -27992305 + (GGA)n Simple_repeat Simple_repeat 1 55 0 1 1535 3462 173 20 75 chr5 124546738 124546877 -27990382 + RMER19B LTR ERVK 1 138 -764 1 1535 1192 55 0 7 chr5 124546877 124547016 -27990243 + B1_Mus1 SINE Alu 2 140 -8 1 1535 180 0 0 0 chr5 124547016 124547036 -27990223 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1535 3462 173 20 75 chr5 124547044 124547611 -27989648 + RMER19B LTR ERVK 139 668 -234 1 1535 1242 112 5 0 chr5 124547609 124547796 -27989463 - B2_Mm2 SINE B2 -6 189 2 1 1535 1360 186 4 8 chr5 124547796 124548039 -27989220 + RMER19B LTR ERVK 656 897 -5 1 1535 1362 188 131 6 chr5 124548045 124548366 -27988893 + MTD LTR MaLR 8 368 -51 1 1535 261 224 30 30 chr5 124548359 124548435 -27988824 + ID4 SINE ID 16 91 -61 1 1535 1530 200 137 38 chr5 124549371 124549818 -27987441 + RMER15 LTR ERVL 7 497 -78 1 1535 382 311 115 0 chr5 124549956 124550104 -27987155 + RSINE1 SINE B4 1 165 0 1 1535 330 195 0 0 chr5 124550108 124550190 -27987069 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1535 923 158 7 0 chr5 124550400 124550546 -27986713 - B1_Mur3 SINE Alu 0 149 3 1 1535 266 86 17 0 chr5 124550959 124551017 -27986242 - B2_Mm2 SINE B2 0 195 137 1 1535 1448 67 17 0 chr5 124551018 124551196 -27986063 - B2_Mm2 SINE B2 -11 184 4 1 1535 24 0 0 0 chr5 124551224 124551248 -27986011 + AT_rich Low_complexity Low_complexity 1 24 0 1 1535 1256 54 0 0 chr5 124551289 124551436 -27985823 + B1_Mus2 SINE Alu 1 147 0 1 1535 328 320 68 10 chr5 124551879 124552084 -27985175 + L1_Mur3 LINE L1 1621 1837 -4043 1 1535 3661 170 136 14 chr5 124552104 124552867 -27984392 - RMER19B LTR ERVK 0 902 47 1 1535 1061 83 0 33 chr5 124552870 124553013 -27984246 + B1_Mus2 SINE Alu 1 139 -8 1 1535 312 94 0 0 chr5 124553013 124553066 -27984193 + (CAA)n Simple_repeat Simple_repeat 2 54 0 1 1535 631 153 27 0 chr5 124553100 124553211 -27984048 - RMER19B LTR ERVK -788 114 1 1 1535 470 257 0 9 chr5 124553550 124553656 -27983603 + Lx8 LINE L1 6585 6689 -784 1 1535 1268 243 54 18 chr5 124553661 124553977 -27983282 - MTC LTR MaLR -8 413 85 1 1535 380 37 0 18 chr5 124553977 124554032 -27983227 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1 1535 1268 243 54 18 chr5 124554032 124554050 -27983209 - MTC LTR MaLR -337 84 68 1 1535 689 92 0 0 chr5 124554050 124554130 -27983129 - B1_Mus2 SINE Alu -9 138 41 1 1535 416 125 26 172 chr5 124554115 124554231 -27983028 - MTC LTR MaLR -319 102 4 1 1535 872 240 68 60 chr5 124554248 124554503 -27982756 + Lx8 LINE L1 6702 6960 -513 1 1535 3041 17 48 3 chr5 124554503 124554854 -27982405 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1535 38599 14 0 0 chr5 124554864 124559766 -27977493 - IAPEz-int LTR ERVK -10 6471 1566 1 1535 6235 51 52 11 chr5 124559772 124560606 -27976653 - IAPEz-int LTR ERVK -5606 875 8 1 1535 3041 17 48 3 chr5 124560606 124560957 -27976302 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1535 21 0 0 0 chr5 124561017 124561038 -27976221 + GC_rich Low_complexity Low_complexity 1 21 0 1 1535 917 238 9 28 chr5 124561158 124561374 -27975885 + B3 SINE B2 3 214 -2 1 1535 288 267 66 11 chr5 124561392 124561483 -27975776 + L1MC LINE L1 4735 4830 -1316 1 1535 183 217 65 0 chr5 124562720 124562766 -27974493 - MIRc SINE MIR -140 128 80 1 1535 949 125 0 0 chr5 124563653 124563789 -27973470 - B1_Mur4 SINE Alu -13 137 2 1 1535 287 85 21 0 chr5 124563877 124563924 -27973335 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 1 1535 590 182 27 7 chr5 124565764 124565913 -27971346 + GA-rich Low_complexity Low_complexity 2 153 0 1 1535 312 127 0 0 chr5 124567045 124567100 -27970159 + (GAA)n Simple_repeat Simple_repeat 2 56 0 1 1535 180 0 0 0 chr5 124568637 124568657 -27968602 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1535 192 125 0 0 chr5 124572107 124572139 -27965120 + (CCCCCT)n Simple_repeat Simple_repeat 2 33 0 1 1535 335 156 127 25 chr5 124572236 124572315 -27964944 + PB1D10 SINE Alu 24 110 -7 1 1535 245 233 16 16 chr5 124572307 124572368 -27964891 + ID4_ SINE ID 17 77 -6 1 1535 435 92 0 0 chr5 124572778 124572843 -27964416 + (TCCC)n Simple_repeat Simple_repeat 2 66 0 1 1535 229 191 0 21 chr5 124573253 124573301 -27963958 + G-rich Low_complexity Low_complexity 1 47 0 1 1535 397 248 59 0 chr5 124577485 124577586 -27959673 - PB1D10 SINE Alu -6 111 5 1 1535 218 115 96 0 chr5 124578147 124578199 -27959060 + MIRb SINE MIR 110 166 -102 1 1535 442 222 0 24 chr5 124581435 124581518 -27955741 - ID4_ SINE ID 0 83 3 1 1535 423 202 19 37 chr5 124583584 124583692 -27953567 - L1MB5 LINE L1 -58 6116 6011 1 1535 396 208 0 0 chr5 124584124 124584201 -27953058 + URR1A DNA MER1_type 56 132 -94 1 1535 543 250 218 4 chr5 124586733 124586970 -27950289 - B4 SINE B4 -4 288 1 1 1535 643 238 0 15 chr5 124586971 124587103 -27950156 + B1_Mus1 SINE Alu 16 145 -3 1 1535 412 252 110 0 chr5 124587149 124587276 -27949983 + ID_B1 SINE B4 81 221 -3 1 1535 291 224 265 0 chr5 124587285 124587383 -27949876 + RSINE1 SINE B4 9 132 -33 1 1535 554 280 7 27 chr5 124587380 124587527 -27949732 + B3A SINE B2 39 182 -16 1 1535 234 0 0 0 chr5 124587880 124587906 -27949353 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1535 228 314 29 0 chr5 124588489 124588559 -27948700 - MIRb SINE MIR -82 186 115 1 1535 1750 199 218 38 chr5 124589970 124590371 -27946888 + MT2A LTR ERVL 3 489 -44 1 1535 288 0 0 0 chr5 124590371 124590403 -27946856 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 1 1535 1750 199 218 38 chr5 124590403 124590451 -27946808 + MT2A LTR ERVL 490 533 0 1 1535 336 48 0 0 chr5 124590864 124590906 -27946353 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1535 250 235 13 117 chr5 124590908 124590985 -27946274 - ID4_ SINE ID -13 70 2 1 1535 337 200 0 0 chr5 124591522 124591587 -27945672 + Charlie8 DNA MER1_type 83 147 -2281 1 1535 507 230 58 22 chr5 124591596 124591734 -27945525 + B1F2 SINE Alu 5 147 -2 1 1535 1822 165 84 20 chr5 124592275 124592622 -27944637 + ORR1D1 LTR MaLR 4 372 -2 1 1535 270 260 188 10 chr5 124593940 124594041 -27943218 - PB1D9 SINE Alu 0 120 2 1 1535 507 60 0 0 chr5 124594044 124594111 -27943148 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 1 1535 318 225 154 22 chr5 124594111 124594202 -27943057 - PB1D10 SINE Alu -1 116 14 1 1535 183 129 0 0 chr5 124594202 124594233 -27943026 + (CACG)n Simple_repeat Simple_repeat 3 33 0 1 1535 646 304 17 13 chr5 124594241 124594471 -27942788 + L1M4 LINE L1 4088 4318 -1828 1 1535 1044 88 7 20 chr5 124594551 124594701 -27942558 + B1_Mus1 SINE Alu 1 148 0 1 1535 364 323 129 25 chr5 124594878 124595346 -27941913 + Lx8 LINE L1 6891 7469 -4 2 1535 342 0 0 0 chr5 124595703 124595741 -27941518 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1535 450 266 9 9 chr5 124595810 124595920 -27941339 + PB1D7 SINE Alu 1 110 -10 2 1535 296 177 228 0 chr5 124596162 124596241 -27941018 + L1M4 LINE L1 5012 5108 -1038 1 1535 1001 139 54 67 chr5 124596243 124596482 -27940777 - RLTR42 LTR ERVK 0 239 4 2 1535 675 37 0 0 chr5 124596499 124596581 -27940678 + (TC)n Simple_repeat Simple_repeat 1 82 0 2 1535 304 267 266 15 chr5 124596706 124596965 -27940294 + L1M4 LINE L1 5272 5595 -579 1 1535 314 200 0 16 chr5 124597021 124597082 -27940177 + MTE2a LTR MaLR 3 62 -317 2 1535 315 122 0 0 chr5 124597101 124597150 -27940109 + (TCC)n Simple_repeat Simple_repeat 3 51 0 2 1535 180 0 0 0 chr5 124597152 124597172 -27940087 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 2 1535 1101 36 50 7 chr5 124597173 124597312 -27939947 - B1_Mus2 SINE Alu -2 145 1 2 1535 921 172 7 0 chr5 124599612 124599757 -27937502 + B1_Mus2 SINE Alu 2 147 0 2 1535 1388 111 5 0 chr5 124599762 124599952 -27937307 + B2_Mm1t SINE B2 1 191 -2 2 1535 956 135 7 33 chr5 124601290 124601443 -27935816 + B1_Mur3 SINE Alu 1 149 0 2 1535 350 356 45 0 chr5 124602001 124602133 -27935126 + MLT1A LTR MaLR 19 156 -218 2 1535 468 0 0 0 chr5 124602730 124602782 -27934477 + (GA)n Simple_repeat Simple_repeat 1 52 0 2 1535 257 300 132 8 chr5 124602805 124602926 -27934333 + MIR3 SINE MIR 1 136 -72 2 1535 294 29 0 0 chr5 124603819 124603854 -27933405 + (CAGG)n Simple_repeat Simple_repeat 4 38 0 2 1535 943 236 55 33 chr5 124604449 124604721 -27932538 - B4A SINE B4 -11 281 4 2 1535 354 309 207 20 chr5 124604904 124605300 -27931959 + HAL1b LINE L1 1079 1548 -461 2 1535 446 211 101 0 chr5 124605323 124605432 -27931827 + L1MC1 LINE L1 5999 6118 -215 2 1535 459 246 222 0 chr5 124605432 124605559 -27931700 + B3A SINE B2 15 169 -47 2 1535 318 26 0 0 chr5 124605559 124605598 -27931661 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1535 370 262 196 20 chr5 124605598 124605618 -27931641 + B3 SINE B2 170 188 -28 2 1535 477 305 52 26 chr5 124605690 124605845 -27931414 + RSINE1 SINE B4 3 161 -4 2 1535 270 221 56 34 chr5 124605930 124606019 -27931240 + L1MC1 LINE L1 6243 6333 0 2 1535 334 264 23 0 chr5 124606227 124606314 -27930945 - BC1_Mm scRNA scRNA -62 90 2 2 1535 341 215 12 12 chr5 124606374 124606454 -27930805 + L1MB8 LINE L1 6093 6172 -6 2 1535 1786 28 4 8 chr5 124606463 124606711 -27930548 - MusHAL1 LINE L1 -5 2707 2461 2 1535 1372 108 16 0 chr5 124606741 124606926 -27930333 + B2_Mm2 SINE B2 1 188 -7 2 1535 393 81 169 38 chr5 124606947 124607060 -27930199 + B2_Mm2 SINE B2 48 189 -4 2 1535 2954 106 17 2 chr5 124607070 124607487 -27929772 + Lx4A LINE L1 6635 7057 -1 2 1535 492 195 135 37 chr5 124607619 124607896 -27929363 + MT2A LTR ERVL 1 462 -71 2 1535 367 243 14 0 chr5 124610103 124610177 -27927082 - ID4_ SINE ID -8 75 1 2 1535 976 66 80 14 chr5 124610356 124610483 -27926776 + B1_Mm SINE Alu 1 138 -9 2 1535 216 0 0 0 chr5 124610483 124610507 -27926752 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 2 1535 186 133 0 0 chr5 124610517 124610547 -27926712 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1535 72 87 0 0 chr5 124611609 124611793 -27925466 + AT_rich Low_complexity Low_complexity 1 184 0 2 1535 455 250 256 18 chr5 124614306 124614579 -27922680 - L1MB7 LINE L1 -73 6111 5774 2 1535 206 244 0 0 chr5 124615105 124615150 -27922109 + GA-rich Low_complexity Low_complexity 3 47 0 2 1535 278 236 54 27 chr5 124617974 124618048 -27919211 - ID4 SINE ID -6 77 2 2 1535 451 319 0 54 chr5 124618235 124618384 -27918875 - MLT1C LTR MaLR 0 467 327 2 1535 435 187 33 11 chr5 124618371 124618463 -27918796 - B1_Mur4 SINE Alu -56 94 1 2 1535 320 213 30 50 chr5 124618375 124618474 -27918785 - B4 SINE B4 -119 173 77 2 1535 232 352 76 30 chr5 124618568 124618700 -27918559 + MLT1K LTR MaLR 458 595 0 2 1535 1284 163 18 5 chr5 124619031 124619253 -27918006 + URR1B DNA MER1_type 1 225 0 2 1535 735 221 14 0 chr5 124619880 124620025 -27917234 + B1_Mus1 SINE Alu 1 147 -1 2 1535 351 0 0 0 chr5 124621214 124621253 -27916006 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1535 1199 34 0 26 chr5 124621333 124621470 -27915789 + B1_Mm SINE Alu 1 137 -10 2 1535 257 0 0 29 chr5 124621470 124621504 -27915755 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2 1535 1199 34 0 26 chr5 124621504 124621517 -27915742 + B1_Mm SINE Alu 138 147 0 2 1535 515 283 68 53 chr5 124621761 124621951 -27915308 - MER46C DNA MER2_type -140 198 6 2 1535 396 0 0 0 chr5 124622140 124622184 -27915075 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 1535 314 195 12 0 chr5 124622189 124622271 -27914988 + GA-rich Low_complexity Low_complexity 2 84 0 2 1535 213 331 123 23 chr5 124622890 124623020 -27914239 + MIRm SINE MIR 5 147 -129 2 1535 216 0 0 0 chr5 124623932 124623956 -27913303 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1535 271 242 61 0 chr5 124623958 124624024 -27913235 - ID4_ SINE ID -13 70 1 2 1535 248 293 67 67 chr5 124624616 124624766 -27912493 - MIR SINE MIR -109 153 4 2 1535 257 264 149 0 chr5 124624947 124625034 -27912225 + L1M3 LINE L1 5762 5861 -319 2 1535 240 59 0 0 chr5 124625590 124625624 -27911635 + (G)n Simple_repeat Simple_repeat 1 34 0 2 1535 1168 49 7 0 chr5 124625728 124625872 -27911387 - B1_Mus2 SINE Alu -1 146 2 2 1535 1766 16 0 0 chr5 124625887 124626080 -27911179 - B2_Mm1a SINE B2 0 193 1 2 1535 322 293 78 20 chr5 124626430 124626583 -27910676 + MLT1C LTR MaLR 104 265 -202 2 1535 261 0 0 0 chr5 124627513 124627542 -27909717 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1535 840 161 0 7 chr5 124627542 124627680 -27909579 - B1_Mus2 SINE Alu -10 137 1 2 1535 311 265 0 101 chr5 124627739 124627848 -27909411 + RSINE1 SINE B4 68 165 0 2 1535 3292 138 32 21 chr5 124629403 124630033 -27907226 + RMER6A LTR ERVK 1 637 -119 2 1535 1228 61 0 0 chr5 124630036 124630184 -27907075 + B1_Mus1 SINE Alu 1 148 0 2 1535 1204 56 0 0 chr5 124631071 124631215 -27906044 + B1_Mus2 SINE Alu 4 147 0 2 1535 255 103 0 0 chr5 124631215 124631254 -27906005 + (A)n Simple_repeat Simple_repeat 1 39 0 2 1535 690 13 0 0 chr5 124631869 124631948 -27905311 + (CATCT)n Simple_repeat Simple_repeat 4 82 0 2 1535 218 323 16 0 chr5 124632341 124632403 -27904856 - MIRc SINE MIR -89 179 117 2 1535 348 261 21 64 chr5 124633156 124633344 -27903915 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1535 236 257 50 29 chr5 124633412 124633552 -27903707 + (CATATA)n Simple_repeat Simple_repeat 5 147 0 2 1535 280 314 31 20 chr5 124633682 124634068 -27903191 + (CA)n Simple_repeat Simple_repeat 1 390 0 2 1535 248 239 0 29 chr5 124637190 124637259 -27900000 + GA-rich Low_complexity Low_complexity 3 69 0 2 1535 875 342 49 20 chr5 124638517 124638923 -27898336 - L1MB5 LINE L1 -36 6138 5721 2 1535 558 315 40 103 chr5 124640317 124640618 -27896641 + MER2 DNA MER2_type 1 282 -63 2 1535 655 271 65 47 chr5 124641085 124641360 -27895899 - L1MB3 LINE L1 -34 6149 5870 2 1535 807 199 0 14 chr5 124641409 124641552 -27895707 + B1_Mur3 SINE Alu 2 142 -7 2 1535 326 289 20 49 chr5 124641609 124641711 -27895548 + L2a LINE L2 3328 3426 0 2 1535 196 241 36 0 chr5 124641731 124641814 -27895445 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 2 1535 498 152 141 0 chr5 124642089 124642188 -27895071 - PB1D9 SINE Alu -1 119 7 2 1535 258 264 32 21 chr5 124642108 124642201 -27895058 - MT2B LTR ERVL -350 251 158 2 1535 313 319 9 0 chr5 124643837 124643950 -27893309 + L1MB7 LINE L1 5842 5955 -229 2 1535 194 287 194 0 chr5 124644333 124644441 -27892818 + L2a LINE L2 3037 3165 -261 2 1535 277 284 105 20 chr5 124644584 124644774 -27892485 + MIRb SINE MIR 42 257 -11 2 1535 321 242 82 25 chr5 124644952 124645092 -27892167 - MIR SINE MIR -115 161 11 2 1535 1221 68 0 0 chr5 124645646 124645794 -27891465 - B1_Mus1 SINE Alu 0 148 1 2 1535 498 158 1 12 chr5 124646083 124646184 -27891075 - ORR1D1 LTR MaLR -259 100 1 2 1535 342 0 0 0 chr5 124647664 124647702 -27889557 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1535 1275 98 35 0 chr5 124647768 124647941 -27889318 + B2_Mm1t SINE B2 1 179 -14 2 1535 276 136 348 18 chr5 124648007 124648119 -27889140 + B2_Mm2 SINE B2 47 195 0 2 1535 879 160 0 0 chr5 124648119 124648275 -27888984 + GA-rich Low_complexity Low_complexity 1 156 0 2 1535 1052 305 79 48 chr5 124648276 124648696 -27888563 - MLT1F LTR MaLR -97 451 19 2 1535 301 320 71 13 chr5 124648701 124648856 -27888403 - MIRb SINE MIR -37 231 68 2 1536 777 274 81 38 chr5 124650888 124651269 -27885990 + L1MB8 LINE L1 5774 6182 -2 2 1536 573 15 0 0 chr5 124651411 124651477 -27885782 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1536 438 20 0 0 chr5 124652372 124652423 -27884836 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1536 666 37 0 0 chr5 124652734 124652815 -27884444 + (GGA)n Simple_repeat Simple_repeat 2 82 0 2 1536 3490 30 2 2 chr5 124653600 124653996 -27883263 - MTA_Mm LTR MaLR 0 396 1 2 1536 858 47 0 0 chr5 124654849 124654956 -27882303 + (GGAGA)n Simple_repeat Simple_repeat 3 109 0 2 1536 224 291 0 95 chr5 124655196 124655344 -27881915 + L2c LINE L2 3007 3140 -247 2 1536 231 88 0 0 chr5 124657640 124657674 -27879585 + (CGGGG)n Simple_repeat Simple_repeat 5 38 0 2 1536 583 218 40 8 chr5 124658498 124658623 -27878636 + B1_Mur2 SINE Alu 2 130 -19 2 1536 397 333 32 13 chr5 124658711 124658869 -27878390 - MIR SINE MIR -44 218 58 3 1536 1558 52 0 20 chr5 124659098 124659295 -27877964 + B2_Mm1a SINE B2 1 193 0 3 1536 222 37 0 0 chr5 124659322 124659349 -27877910 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1536 222 62 0 0 chr5 124659471 124659503 -27877756 + (A)n Simple_repeat Simple_repeat 1 32 0 3 1536 360 247 103 0 chr5 124660207 124660309 -27876950 - B1F SINE Alu 0 127 2 3 1536 183 42 0 0 chr5 124661084 124661108 -27876151 + (G)n Simple_repeat Simple_repeat 1 24 0 3 1536 333 0 0 0 chr5 124661201 124661238 -27876021 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1536 181 250 125 42 chr5 124661248 124661344 -27875915 + L2c LINE L2 3264 3367 -20 3 1536 258 300 62 19 chr5 124661613 124661737 -27875522 + MIRb SINE MIR 51 178 -98 3 1536 1036 86 0 0 chr5 124662012 124662152 -27875107 - B2_Mm2 SINE B2 -55 140 1 3 1536 224 245 38 0 chr5 124662294 124662347 -27874912 - ID4_ SINE ID -27 56 2 3 1536 3402 16 39 0 chr5 124662587 124662968 -27874291 + MTA_Mm LTR MaLR 1 396 0 3 1536 319 252 29 29 chr5 124662982 124663084 -27874175 + MTEa LTR MaLR 278 379 0 3 1536 218 329 38 0 chr5 124664681 124664760 -27872499 + L2a LINE L2 3301 3382 -44 3 1536 1004 150 0 0 chr5 124666969 124667116 -27870143 + B1_Mur4 SINE Alu 2 148 -2 3 1536 677 65 0 61 chr5 124667121 124667220 -27870039 + B1_Mus1 SINE Alu 2 94 -54 3 1536 243 0 0 79 chr5 124667433 124667463 -27869796 + B1_Mus2 SINE Alu 112 141 -6 3 1536 314 43 43 0 chr5 124667463 124667510 -27869749 + (CAAAC)n Simple_repeat Simple_repeat 2 50 0 3 1536 765 314 31 91 chr5 124669440 124669810 -27867449 - L1MB7 LINE L1 -25 6159 5829 3 1536 383 241 0 0 chr5 124669810 124669889 -27867370 - ID4_ SINE ID -1 82 4 3 1536 765 314 31 91 chr5 124669889 124670058 -27867201 - L1MB7 LINE L1 -356 5828 5652 3 1536 250 279 25 25 chr5 124670087 124670168 -27867091 - ID4_ SINE ID -1 82 2 3 1536 411 98 0 0 chr5 124670602 124670663 -27866596 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1536 777 209 0 0 chr5 124670793 124670927 -27866332 - B1_Mur1 SINE Alu -10 139 6 3 1536 377 333 26 84 chr5 124670927 124670947 -27866312 - B4 SINE B4 -76 216 72 3 1536 207 0 0 0 chr5 124671340 124671363 -27865896 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1536 450 294 140 52 chr5 124671963 124672449 -27864810 + L1MB2 LINE L1 5654 6180 0 3 1536 366 268 30 30 chr5 124673394 124673494 -27863765 + B1F1 SINE Alu 1 100 -49 3 1536 411 239 99 18 chr5 124675023 124675134 -27862125 + PB1D9 SINE Alu 1 120 0 3 1536 252 0 0 0 chr5 124675154 124675182 -27862077 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 1536 598 170 80 15 chr5 124675320 124675457 -27861802 + B1F2 SINE Alu 3 148 -1 3 1536 775 132 70 49 chr5 124675460 124675603 -27861656 + B1_Mus1 SINE Alu 2 147 -1 3 1536 476 231 33 39 chr5 124676687 124676840 -27860419 - L1MB3 LINE L1 -57 6126 5975 3 1536 276 169 17 75 chr5 124677727 124677900 -27859359 + (CATA)n Simple_repeat Simple_repeat 2 164 0 3 1536 449 165 98 49 chr5 124678480 124678582 -27858677 + PB1D10 SINE Alu 1 107 -10 3 1536 204 154 26 0 chr5 124678598 124678637 -27858622 + GA-rich Low_complexity Low_complexity 3 42 0 3 1536 252 0 0 0 chr5 124678763 124678791 -27858468 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1536 342 0 0 0 chr5 124679074 124679112 -27858147 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1536 25 0 0 0 chr5 124680055 124680080 -27857179 + AT_rich Low_complexity Low_complexity 1 25 0 3 1536 189 289 76 22 chr5 124680890 124680982 -27856277 - MIR3 SINE MIR -31 177 81 3 1536 347 319 84 118 chr5 124681349 124681463 -27855796 + MLT1C LTR MaLR 78 180 -287 3 1536 252 324 0 78 chr5 124681463 124681540 -27855719 + tRNA-Ala-GCY_ tRNA tRNA 3 73 -2 3 1536 347 319 84 118 chr5 124681540 124681565 -27855694 + MLT1C LTR MaLR 181 199 -268 3 1536 573 257 97 39 chr5 124681565 124681719 -27855540 + RSINE1 SINE B4 3 165 0 3 1536 369 0 0 0 chr5 124681719 124681760 -27855499 + (CAAT)n Simple_repeat Simple_repeat 1 41 0 3 1536 347 319 84 118 chr5 124681760 124682009 -27855250 + MLT1C LTR MaLR 200 454 -13 3 1536 305 339 189 6 chr5 124682763 124682932 -27854327 - L1MB8 LINE L1 -27 6151 5952 3 1536 273 331 46 0 chr5 124682954 124683084 -27854175 - L1MB8 LINE L1 -273 5901 5766 3 1536 360 299 24 59 chr5 124683411 124683588 -27853671 + MIRc SINE MIR 26 195 -81 3 1536 306 0 0 0 chr5 124683786 124683820 -27853439 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1536 1069 236 19 0 chr5 124685317 124685529 -27851730 - B3 SINE B2 0 216 1 3 1536 326 293 67 20 chr5 124685630 124685825 -27851434 - L1MB1 LINE L1 -130 6038 5835 3 1536 553 258 53 63 chr5 124685943 124686133 -27851126 - B3A SINE B2 -9 189 2 3 1536 181 184 79 0 chr5 124686226 124686264 -27850995 + MIR SINE MIR 58 98 -110 3 1536 805 176 15 0 chr5 124687063 124687199 -27850060 - B1_Mus2 SINE Alu -1 146 9 3 1536 682 264 129 10 chr5 124687261 124687322 -27849937 + L1MB3 LINE L1 5769 5834 -349 3 1536 507 107 0 0 chr5 124687322 124687397 -27849862 + (CATA)n Simple_repeat Simple_repeat 2 76 0 3 1536 682 274 129 14 chr5 124687397 124687698 -27849561 + L1MB3 LINE L1 5835 6168 -3 3 1536 702 240 105 8 chr5 124687678 124687926 -27849333 + L1MB5 LINE L1 5803 6074 -100 3 1536 387 0 0 0 chr5 124688350 124688393 -27848866 + (CAG)n Simple_repeat Simple_repeat 2 44 0 3 1536 316 169 34 0 chr5 124688992 124689051 -27848208 - MTD LTR MaLR 0 419 359 3 1536 711 196 330 28 chr5 124689051 124689336 -27847923 + ORR1C2 LTR MaLR 1 371 -13 3 1536 1527 230 67 14 chr5 124689346 124689690 -27847569 - MTD LTR MaLR -53 366 5 3 1536 198 0 0 0 chr5 124690323 124690345 -27846914 + (A)n Simple_repeat Simple_repeat 1 22 0 3 1536 3646 202 73 41 chr5 124693071 124693984 -27843275 + RMER19B LTR ERVK 1 902 0 3 1536 1678 303 69 9 chr5 124694144 124694697 -27842562 - MER82 DNA MER2_type -53 600 15 3 1536 327 275 10 17 chr5 124695545 124695648 -27841611 + MTEb LTR MaLR 233 329 -50 3 1536 227 297 31 15 chr5 124695833 124695898 -27841361 + PB1D10 SINE Alu 6 71 -46 3 1536 1101 246 16 28 chr5 124695878 124696129 -27841130 + B4 SINE B4 45 292 0 3 1536 222 118 0 0 chr5 124696193 124696227 -27841032 + (CAGG)n Simple_repeat Simple_repeat 2 35 0 3 1536 253 276 53 0 chr5 124696563 124696639 -27840620 - L4 LINE RTE -262 1767 1688 3 1536 1022 161 118 15 chr5 124696663 124696858 -27840401 + B3 SINE B2 2 216 0 3 1536 220 171 0 0 chr5 124699144 124699179 -27838080 + G-rich Low_complexity Low_complexity 1 35 0 3 1536 266 235 0 29 chr5 124699382 124699452 -27837807 + (CCCG)n Simple_repeat Simple_repeat 4 71 0 3 1536 30 59 0 0 chr5 124699507 124699558 -27837701 + GC_rich Low_complexity Low_complexity 1 51 0 3 1536 21 36 0 0 chr5 124699812 124699840 -27837419 + GC_rich Low_complexity Low_complexity 1 28 0 3 1536 21 36 0 0 chr5 124699846 124699874 -27837385 + GC_rich Low_complexity Low_complexity 1 28 0 3 1536 306 0 0 0 chr5 124700768 124700802 -27836457 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1536 265 222 183 12 chr5 124700967 124701049 -27836210 - L2c LINE L2 -5 3382 3287 3 1536 200 289 0 22 chr5 124701018 124701064 -27836195 - MIRm SINE MIR -85 191 147 3 1536 315 203 162 0 chr5 124702111 124702185 -27835074 + BC1_Mm scRNA scRNA 2 87 -65 3 1536 609 179 0 21 chr5 124702189 124702286 -27834973 + B3 SINE B2 1 95 -121 3 1536 22 35 0 0 chr5 124702292 124702321 -27834938 + AT_rich Low_complexity Low_complexity 1 29 0 3 1536 723 234 28 0 chr5 124704347 124704492 -27832767 - RSINE1 SINE B4 -14 151 3 3 1536 855 170 14 7 chr5 124705252 124705400 -27831859 - B1_Mur4 SINE Alu 0 150 2 3 1536 241 308 81 16 chr5 124705965 124706150 -27831109 - L1M5 LINE L1 -272 5852 5656 3 1536 271 284 136 0 chr5 124706297 124706385 -27830874 + PB1D10 SINE Alu 18 117 0 3 1536 1218 170 10 0 chr5 124706489 124706695 -27830564 + B3 SINE B2 1 208 -8 3 1536 918 174 0 0 chr5 124706712 124706861 -27830398 + B1_Mur3 SINE Alu 1 149 0 3 1536 29 0 0 0 chr5 124706861 124706890 -27830369 + AT_rich Low_complexity Low_complexity 1 29 0 3 1536 525 259 134 11 chr5 124706902 124707089 -27830170 - ID_B1 SINE B4 -13 211 2 3 1536 415 181 67 0 chr5 124707095 124707183 -27830076 - PB1D10 SINE Alu -6 111 15 3 1536 267 290 158 84 chr5 124707183 124707295 -27829964 - ID_B1 SINE B4 -3 218 4 3 1536 384 304 83 76 chr5 124707567 124707724 -27829535 + RSINE1 SINE B4 8 165 0 3 1536 25 31 0 0 chr5 124707736 124707768 -27829491 + AT_rich Low_complexity Low_complexity 1 32 0 3 1536 894 237 15 35 chr5 124707779 124707980 -27829279 + 7SK RNA RNA 59 255 -76 3 1536 1348 212 99 14 chr5 124708531 124708876 -27828383 + ORR1D1 LTR MaLR 1 374 0 3 1536 706 111 198 0 chr5 124709243 124709369 -27827890 + ORR1C1 LTR MaLR 1 151 -227 3 1536 553 146 43 60 chr5 124709375 124709492 -27827767 + B2_Mm2 SINE B2 79 193 -2 3 1536 1358 163 18 0 chr5 124709488 124709715 -27827544 + ORR1C1 LTR MaLR 143 373 -5 3 1536 403 277 9 26 chr5 124709776 124709891 -27827368 - PB1D10 SINE Alu -3 114 2 3 1536 22 35 0 0 chr5 124709936 124709965 -27827294 + AT_rich Low_complexity Low_complexity 1 29 0 3 1536 514 261 30 0 chr5 124710387 124710521 -27826738 - B1F SINE Alu -7 142 5 3 1536 273 297 14 0 chr5 124711755 124711829 -27825430 + RSINE1 SINE B4 67 141 -24 3 1536 318 67 0 0 chr5 124711829 124711874 -27825385 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1536 274 197 155 0 chr5 124712581 124712652 -27824607 - ID4 SINE ID 0 83 2 3 1536 398 210 225 8 chr5 124712660 124712780 -27824479 - B1F1 SINE Alu -2 147 2 3 1536 213 324 36 9 chr5 124713445 124713466 -27823793 + polypurine Low_complexity Low_complexity 4 26 0 4 1536 337 282 129 0 chr5 124713466 124713590 -27823669 + B1F2 SINE Alu 1 140 -9 4 1536 257 311 18 21 chr5 124713590 124713685 -27823574 + GA-rich Low_complexity Low_complexity 1 94 0 4 1536 241 219 39 0 chr5 124713762 124713819 -27823440 - B1F1 SINE Alu -50 67 9 4 1536 291 54 0 0 chr5 124713997 124714034 -27823225 + (TTA)n Simple_repeat Simple_repeat 1 37 0 4 1536 723 242 56 6 chr5 124714053 124714215 -27823044 - B3A SINE B2 -19 179 10 4 1536 447 289 88 15 chr5 124714355 124714492 -27822767 - B1_Mur1 SINE Alu 0 149 3 4 1536 22 35 0 0 chr5 124714501 124714530 -27822729 + AT_rich Low_complexity Low_complexity 1 29 0 4 1536 741 285 67 5 chr5 124714599 124714793 -27822466 + B3 SINE B2 6 211 -5 4 1536 1316 87 17 0 chr5 124714817 124714989 -27822270 + B2_Mm2 SINE B2 2 176 -19 4 1536 416 78 0 22 chr5 124715027 124715128 -27822131 + B2_Mm2 SINE B2 47 181 -14 4 1536 1195 54 0 0 chr5 124715134 124715281 -27821978 - B1_Mus1 SINE Alu 0 148 2 4 1536 256 298 23 23 chr5 124715662 124715748 -27821511 + B4A SINE B4 82 167 -125 4 1536 537 185 9 44 chr5 124715673 124715786 -27821473 + PB1D10 SINE Alu 9 117 0 4 1536 1266 35 0 0 chr5 124716434 124716577 -27820682 + B1_Mus1 SINE Alu 1 143 -5 4 1536 217 160 111 74 chr5 124716642 124716723 -27820536 + ID_B1 SINE B4 86 169 -55 4 1536 884 240 17 12 chr5 124717270 124717443 -27819816 - B3 SINE B2 -42 174 1 4 1536 545 157 148 55 chr5 124717613 124717741 -27819518 - B1_Mus1 SINE Alu -8 140 1 4 1536 395 194 0 0 chr5 124718005 124718067 -27819192 + RSINE1 SINE B4 58 119 -46 4 1536 513 71 0 0 chr5 124718076 124718146 -27819113 + (CA)n Simple_repeat Simple_repeat 1 70 0 4 1536 1124 83 21 0 chr5 124718188 124718333 -27818926 - B1_Mus1 SINE Alu 0 148 1 4 1536 433 226 43 0 chr5 124718481 124718574 -27818685 + B1_Mur2 SINE Alu 2 98 -51 4 1536 728 231 26 42 chr5 124718568 124718758 -27818501 - MTD LTR MaLR -113 306 120 4 1536 323 309 68 5 chr5 124720028 124720295 -27816964 - L1M5 LINE L1 -591 5533 5246 4 1536 279 0 0 0 chr5 124720318 124720349 -27816910 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1536 758 211 34 0 chr5 124720366 124720513 -27816746 + RSINE1 SINE B4 14 165 0 4 1536 275 261 15 0 chr5 124720773 124720838 -27816421 + tRNA-Ala-GCY_ tRNA tRNA 4 69 -6 4 1536 669 232 28 7 chr5 124721086 124721229 -27816030 - RSINE1 SINE B4 -18 147 2 4 1536 221 94 0 0 chr5 124721320 124721352 -27815907 + B1_Mus2 SINE Alu 1 32 -115 4 1536 3259 42 69 40 chr5 124721352 124721802 -27815457 + IAPLTR2_Mm LTR ERVK 1 463 -12 4 1536 564 115 15 144 chr5 124721803 124721935 -27815324 + IAPEz-int LTR ERVK 9 123 -6358 4 1536 234 267 0 0 chr5 124721935 124721980 -27815279 + RLTR27 LTR ERVK 231 275 -34 4 1536 11116 66 47 92 chr5 124721982 124723656 -27813603 + IAPEz-int LTR ERVK 94 1700 -4781 4 1536 6521 62 12 11 chr5 124723649 124724477 -27812782 + IAPEz-int LTR ERVK 5651 6479 -2 4 1536 3446 36 80 56 chr5 124724479 124724943 -27812316 + IAPLTR2_Mm LTR ERVK 1 475 0 4 1536 910 50 8 0 chr5 124724944 124725063 -27812196 + B1_Mus2 SINE Alu 28 147 0 4 1536 243 319 42 0 chr5 124725145 124725217 -27812042 - Cheshire DNA MER1_type -2157 263 189 4 1536 534 215 0 0 chr5 124725250 124725343 -27811916 - B1_Mm SINE Alu -31 116 24 4 1536 436 302 175 22 chr5 124725354 124725537 -27811722 - B4A SINE B4 0 292 82 4 1536 439 300 7 28 chr5 124725546 124725690 -27811569 - ID_B1 SINE B4 0 224 84 4 1536 759 152 0 0 chr5 124725579 124725691 -27811568 - B1_Mur4 SINE Alu -37 113 2 4 1536 192 111 0 0 chr5 124725710 124725746 -27811513 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 4 1536 632 93 82 27 chr5 124725751 124725861 -27811398 - B1_Mur3 SINE Alu -6 143 28 4 1536 332 330 81 65 chr5 124725861 124725877 -27811382 - B4 SINE B4 -69 220 96 4 1536 1224 173 9 27 chr5 124725877 124726097 -27811162 - B3 SINE B2 0 216 1 4 1536 332 330 81 65 chr5 124726097 124726152 -27811107 - B4 SINE B4 -197 95 36 4 1536 1456 69 16 16 chr5 124726722 124726913 -27810346 - B2_Mm2 SINE B2 -2 193 3 4 1536 432 306 157 0 chr5 124727044 124727178 -27810081 - RSINE1 SINE B4 -8 157 3 4 1536 396 0 0 0 chr5 124727465 124727509 -27809750 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1536 576 225 42 14 chr5 124727517 124727661 -27809598 + B1_Mur3 SINE Alu 1 148 -1 4 1536 190 322 23 69 chr5 124727669 124727799 -27809460 + L2 LINE L2 2839 2962 -457 4 1536 529 302 66 19 chr5 124727807 124728028 -27809231 + ORR1E LTR MaLR 1 245 -125 4 1536 610 258 24 33 chr5 124728132 124728292 -27808967 - ID_B1 SINE B4 -67 225 78 4 1536 328 342 12 58 chr5 124728312 124728483 -27808776 - RSINE1 SINE B4 0 165 3 4 1536 360 316 61 55 chr5 124728543 124728724 -27808535 - B3A SINE B2 -16 182 1 4 1536 299 293 94 36 chr5 124728950 124728964 -27808295 + ID_B1 SINE B4 79 222 0 4 1536 435 262 139 0 chr5 124728964 124729086 -27808173 + B1_Mur4 SINE Alu 12 150 0 4 1536 3225 111 103 6 chr5 124729180 124729724 -27807535 - Lx4B LINE L1 -1074 4803 4207 4 1536 7938 117 27 98 chr5 124729717 124730798 -27806461 + Lx4B LINE L1 4820 5841 -1217 4 1536 1431 64 27 0 chr5 124730798 124730986 -27806273 + B2_Mm1t SINE B2 1 193 0 4 1536 7938 154 27 47 chr5 124730986 124732243 -27805016 + Lx4B LINE L1 5842 7057 -1 4 1536 295 169 14 14 chr5 124732463 124732535 -27804724 + CT-rich Low_complexity Low_complexity 1 72 0 4 1536 879 70 70 0 chr5 124732542 124732671 -27804588 - B1_Mur2 SINE Alu 0 149 12 4 1536 909 158 20 0 chr5 124732863 124733009 -27804250 - B1_Mur1 SINE Alu 0 149 1 4 1536 539 245 96 13 chr5 124733205 124733371 -27803888 + B3A SINE B2 2 179 -14 4 1536 295 74 18 36 chr5 124733912 124733968 -27803291 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 4 1536 71 47 0 0 chr5 124734131 124734237 -27803022 + AT_rich Low_complexity Low_complexity 1 106 0 4 1536 22 35 0 0 chr5 124734390 124734419 -27802840 + AT_rich Low_complexity Low_complexity 1 29 0 4 1536 414 0 0 0 chr5 124734425 124734471 -27802788 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1536 264 238 0 60 chr5 124734484 124734551 -27802708 - RSINE1 SINE B4 -36 129 67 4 1536 1306 97 23 0 chr5 124734857 124735033 -27802226 + B2_Mm2 SINE B2 1 180 -15 4 1536 410 219 40 30 chr5 124735071 124735170 -27802089 - B3A SINE B2 -97 101 2 4 1536 26 0 0 0 chr5 124736605 124736631 -27800628 + AT_rich Low_complexity Low_complexity 1 26 0 4 1536 1486 63 16 5 chr5 124736636 124736827 -27800432 - B2_Mm2 SINE B2 -1 194 2 4 1536 259 298 47 23 chr5 124736970 124737056 -27800203 + ID_B1 SINE B4 67 154 -70 4 1536 284 224 39 124 chr5 124736994 124737147 -27800112 + B1F1 SINE Alu 10 149 0 4 1536 195 100 0 0 chr5 124737529 124737559 -27799700 + (GGGAGA)n Simple_repeat Simple_repeat 3 32 0 4 1536 270 308 0 0 chr5 124737563 124737628 -27799631 - B3A SINE B2 -46 152 88 4 1536 378 197 0 0 chr5 124737625 124737691 -27799568 + B3A SINE B2 8 73 -125 4 1536 813 197 80 40 chr5 124737930 124738131 -27799128 + B3 SINE B2 3 211 -5 4 1536 746 203 0 36 chr5 124738156 124738294 -27798965 + B1_Mur2 SINE Alu 15 147 -2 4 1536 574 292 184 16 chr5 124738301 124738641 -27798618 + L1MEc LINE L1 1160 1651 -1029 4 1536 1556 47 21 0 chr5 124738812 124739002 -27798257 + B2_Mm2 SINE B2 1 194 -1 4 1536 240 270 273 16 chr5 124739029 124739157 -27798102 + RSINE1 SINE B4 5 165 0 4 1536 1220 61 0 0 chr5 124739230 124739378 -27797881 - B1_Mus1 SINE Alu 0 148 1 4 1536 383 257 73 0 chr5 124739401 124739510 -27797749 + B3 SINE B2 100 216 0 4 1536 256 250 0 0 chr5 124739698 124739750 -27797509 + B4A SINE B4 85 136 -156 4 1536 271 167 309 0 chr5 124739709 124739793 -27797466 + PB1D9 SINE Alu 11 120 0 4 1536 1174 55 7 0 chr5 124739795 124739941 -27797318 + B1_Mus1 SINE Alu 1 147 -1 4 1536 333 47 0 0 chr5 124740083 124740126 -27797133 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1536 468 217 65 9 chr5 124740209 124740316 -27796943 + PB1D10 SINE Alu 1 113 -4 4 1536 466 262 390 17 chr5 124740587 124740828 -27796431 + ORR1D2 LTR MaLR 6 336 -43 4 1536 939 67 8 0 chr5 124741407 124741527 -27795732 - B2_Mm2 SINE B2 -73 122 2 4 1536 249 309 9 76 chr5 124741688 124741793 -27795466 + PB1 SINE Alu 30 127 0 4 1536 1159 75 7 0 chr5 124742057 124742203 -27795056 + B1_Mus2 SINE Alu 1 147 0 4 1536 1252 34 7 0 chr5 124742680 124742827 -27794432 + B1_Mus1 SINE Alu 1 148 0 4 1536 307 101 369 27 chr5 124743284 124743395 -27793864 - B2_Mm2 SINE B2 0 195 47 4 1536 1045 94 126 0 chr5 124743462 124743621 -27793638 - B2_Mm1t SINE B2 -14 179 1 4 1536 401 217 0 0 chr5 124743680 124743749 -27793510 - ID SINE ID -151 73 5 4 1536 276 102 0 0 chr5 124743826 124743875 -27793384 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1536 432 258 0 31 chr5 124743877 124743973 -27793286 - RSINE1 SINE B4 -50 115 23 4 1536 267 253 34 11 chr5 124743973 124744061 -27793198 + L1MB2 LINE L1 6029 6118 -53 4 1536 26 30 0 0 chr5 124744078 124744111 -27793148 + AT_rich Low_complexity Low_complexity 1 33 0 4 1536 697 266 96 31 chr5 124744295 124744555 -27792704 - B4 SINE B4 -14 278 2 4 1536 674 299 68 26 chr5 124744620 124744812 -27792447 - B3 SINE B2 -6 210 11 4 1536 564 316 33 39 chr5 124744827 124745008 -27792251 - B3A SINE B2 0 198 19 4 1536 3200 30 8 0 chr5 124745046 124745418 -27791841 + L1Md_F3 LINE L1 6195 6569 -15 4 1536 1279 97 11 0 chr5 124745432 124745608 -27791651 - B2_Mm1t SINE B2 -14 179 2 4 1536 1270 103 11 0 chr5 124745659 124745834 -27791425 + B2_Mm1t SINE B2 3 179 -14 5 1536 414 94 349 28 chr5 124745881 124745990 -27791269 + B2_Mm2 SINE B2 47 190 -5 5 1536 369 0 0 0 chr5 124746152 124746193 -27791066 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1536 234 174 0 0 chr5 124746195 124746241 -27791018 + GA-rich Low_complexity Low_complexity 1 46 0 5 1536 1270 20 7 0 chr5 124746303 124746449 -27790810 + B1_Mm SINE Alu 1 147 0 5 1536 281 310 32 76 chr5 124746740 124746897 -27790362 + RLTR14 LTR ERV1 233 382 0 5 1536 636 219 49 55 chr5 124747069 124747233 -27790026 - RSINE1 SINE B4 0 165 3 5 1536 1230 202 66 96 chr5 124747787 124748164 -27789095 + MTEa LTR MaLR 14 379 0 5 1536 874 171 0 0 chr5 124748311 124748451 -27788808 - B1_Mur1 SINE Alu -8 141 2 5 1536 686 226 30 48 chr5 124749394 124749561 -27787698 + B2_Mm2 SINE B2 1 164 -31 5 1536 305 140 18 0 chr5 124749565 124749622 -27787637 + CT-rich Low_complexity Low_complexity 2 59 0 5 1536 1049 58 72 0 chr5 124749624 124749762 -27787497 - B1_Mus1 SINE Alu 0 148 1 5 1536 690 13 0 0 chr5 124749777 124749856 -27787403 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 5 1536 853 186 7 0 chr5 124749867 124750012 -27787247 + B1_Mur4 SINE Alu 5 150 0 5 1536 369 356 30 0 chr5 124750242 124750374 -27786885 + ORR1E LTR MaLR 3 138 -221 5 1536 269 128 43 0 chr5 124750385 124750432 -27786827 + B3A SINE B2 3 51 -147 5 1536 658 208 170 27 chr5 124750475 124750663 -27786596 - B3 SINE B2 0 216 2 5 1536 413 258 8 24 chr5 124750708 124750831 -27786428 + ID_B1 SINE B4 104 224 0 5 1536 636 272 70 17 chr5 124750833 124751005 -27786254 + B3 SINE B2 3 183 -33 5 1536 210 143 0 0 chr5 124751005 124751054 -27786205 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1536 219 36 0 0 chr5 124751054 124751082 -27786177 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1536 699 192 67 27 chr5 124751121 124751271 -27785988 - RSINE1 SINE B4 -8 157 2 5 1536 1901 178 135 17 chr5 124751343 124751685 -27785574 + RLTR20D LTR ERVK 6 436 -132 5 1536 1194 54 0 26 chr5 124751685 124751836 -27785423 + B1_Mus2 SINE Alu 1 147 0 5 1536 1901 169 139 16 chr5 124751836 124751966 -27785293 + RLTR20D LTR ERVK 437 567 -1 5 1536 539 243 71 39 chr5 124752115 124752269 -27784990 - B4 SINE B4 -8 284 126 5 1536 244 322 51 83 chr5 124752505 124752521 -27784738 + B4 SINE B4 70 108 -184 5 1536 254 344 10 51 chr5 124752521 124752619 -27784640 + PB1D10 SINE Alu 2 95 -22 5 1536 244 322 51 83 chr5 124752619 124752661 -27784598 + B4 SINE B4 109 220 -72 5 1536 213 39 0 0 chr5 124752681 124752707 -27784552 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1536 347 60 20 0 chr5 124752882 124752932 -27784327 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1536 718 226 74 25 chr5 124752986 124753149 -27784110 - URR1B DNA MER1_type -30 195 25 5 1536 1191 48 14 0 chr5 124753166 124753311 -27783948 + B1_Mm SINE Alu 1 147 0 5 1536 431 248 161 99 chr5 124753385 124753658 -27783601 - B4 SINE B4 0 292 3 5 1536 489 267 0 32 chr5 124753674 124753798 -27783461 - PB1D7 SINE Alu 0 120 1 5 1536 1039 89 18 12 chr5 124753871 124754042 -27783217 + L1Md_F2 LINE L1 6411 6582 0 5 1536 723 200 27 48 chr5 124754350 124754381 -27782878 + RSINE1 SINE B4 3 31 -134 5 1536 3564 23 0 0 chr5 124754381 124754777 -27782482 - MTA_Mm LTR MaLR 0 396 1 5 1536 723 200 27 48 chr5 124754777 124754892 -27782367 + RSINE1 SINE B4 32 146 -19 5 1536 303 28 0 0 chr5 124754911 124754947 -27782312 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 5 1536 697 238 14 0 chr5 124755086 124755229 -27782030 + B1F2 SINE Alu 5 149 0 5 1536 327 49 0 0 chr5 124755335 124755376 -27781883 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1536 424 318 40 7 chr5 124755387 124755536 -27781723 + ID_B1 SINE B4 52 205 -19 5 1536 882 181 0 0 chr5 124755573 124755711 -27781548 - B1_Mus2 SINE Alu -5 142 5 5 1536 303 323 156 21 chr5 124755978 124756215 -27781044 - L2 LINE L2 -501 2918 2650 5 1536 1250 158 30 0 chr5 124756591 124756793 -27780466 + B3 SINE B2 9 216 0 5 1536 546 204 29 10 chr5 124756819 124756944 -27780315 + B1F2 SINE Alu 15 143 -6 5 1536 372 214 0 0 chr5 124757561 124757631 -27779628 - PB1D10 SINE Alu 0 117 48 5 1536 295 149 86 43 chr5 124757661 124757731 -27779528 - ID4 SINE ID -9 74 2 5 1536 190 0 67 0 chr5 124757749 124757779 -27779480 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5 1536 1213 54 0 0 chr5 124757779 124757919 -27779340 - B1_Mus1 SINE Alu -7 141 2 5 1536 1000 211 52 0 chr5 124757944 124758138 -27779121 - B3 SINE B2 -12 204 1 5 1536 279 346 37 8 chr5 124758149 124758283 -27778976 - B1F2 SINE Alu -7 142 5 5 1536 721 239 5 96 chr5 124758363 124758581 -27778678 + B3A SINE B2 1 198 0 5 1536 216 97 0 0 chr5 124758757 124758788 -27778471 + (T)n Simple_repeat Simple_repeat 1 31 0 5 1536 957 126 0 14 chr5 124758801 124758946 -27778313 - B1_Mur3 SINE Alu -6 143 1 5 1536 1148 49 35 0 chr5 124760088 124760231 -27777028 - B1_Mus1 SINE Alu 0 148 1 5 1536 212 191 64 0 chr5 124760241 124760288 -27776971 + MER5B DNA MER1_type 127 176 -2 5 1536 508 255 10 0 chr5 124760893 124760995 -27776264 + PB1D7 SINE Alu 11 113 -7 5 1536 646 197 13 47 chr5 124761061 124761210 -27776049 + B1_Mur1 SINE Alu 1 144 -5 5 1536 255 321 211 0 chr5 124761291 124761400 -27775859 + RSINE1 SINE B4 24 155 -10 5 1536 246 333 0 51 chr5 124761950 124762029 -27775230 - ID4_ SINE ID -6 77 3 5 1536 642 228 89 0 chr5 124762122 124762302 -27774957 - B3 SINE B2 -13 203 8 5 1536 801 238 54 0 chr5 124762421 124762606 -27774653 + B3 SINE B2 16 210 -6 5 1536 505 250 124 8 chr5 124762962 124763091 -27774168 + B1_Mur2 SINE Alu 6 149 0 5 1536 777 126 16 57 chr5 124763140 124763281 -27773978 + B2_Mm1t SINE B2 58 192 -1 5 1536 1500 72 5 5 chr5 124763295 124763490 -27773769 + B2_Mm2 SINE B2 1 195 0 5 1536 706 290 52 0 chr5 124763500 124763693 -27773566 - B3 SINE B2 -10 206 4 5 1536 378 228 142 52 chr5 124763774 124763908 -27773351 - RSINE1 SINE B4 -19 146 1 5 1536 739 162 78 35 chr5 124763943 124764084 -27773175 - B1_Mur3 SINE Alu -2 147 1 5 1536 677 173 82 8 chr5 124764179 124764313 -27772946 - B1_Mur4 SINE Alu 0 150 7 5 1536 735 158 120 0 chr5 124764345 124764478 -27772781 - B1_Mur3 SINE Alu 0 149 1 5 1536 497 274 39 58 chr5 124764499 124764654 -27772605 - B3 SINE B2 0 216 65 5 1536 1460 65 16 0 chr5 124764677 124764861 -27772398 + B2_Mm1a SINE B2 2 188 -5 5 1536 869 118 90 30 chr5 124764871 124765037 -27772222 + Lx2 LINE L1 6811 6986 -11 5 1536 258 105 0 0 chr5 124765037 124765075 -27772184 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 5 1536 213 217 22 0 chr5 124765101 124765147 -27772112 - B3 SINE B2 -168 48 2 5 1536 501 211 8 74 chr5 124766243 124766380 -27770879 - B1F SINE Alu -10 137 2 5 1536 648 194 108 0 chr5 124766539 124766678 -27770581 - B3 SINE B2 -61 155 2 5 1536 233 337 61 86 chr5 124766691 124766750 -27770509 - B3A SINE B2 -4 194 2 5 1536 665 266 14 0 chr5 124766750 124766889 -27770370 - RSINE1 SINE B4 -22 143 3 5 1536 318 303 101 0 chr5 124766922 124767011 -27770248 + PB1D7 SINE Alu 3 100 -20 5 1536 208 262 0 0 chr5 124767032 124767074 -27770185 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 5 1536 683 220 31 177 chr5 124767081 124767307 -27769952 - B4 SINE B4 -6 286 94 5 1536 999 101 22 0 chr5 124767170 124767308 -27769951 - B1_Mur4 SINE Alu -1 149 9 5 1536 324 262 8 130 chr5 124767316 124767439 -27769820 - B4 SINE B4 -59 233 126 5 1536 854 199 0 0 chr5 124768416 124768557 -27768702 - B1_Mur2 SINE Alu 0 149 9 5 1536 437 191 25 118 chr5 124768451 124768570 -27768689 - MT2B LTR ERVL -337 264 157 5 1536 296 194 29 15 chr5 124769428 124769496 -27767763 - tRNA-Ala-GCY_ tRNA tRNA -6 69 1 5 1536 338 261 87 94 chr5 124769629 124769756 -27767503 + B1F SINE Alu 15 140 -9 5 1536 204 222 0 0 chr5 124770038 124770061 -27767198 + A-rich Low_complexity Low_complexity 1 23 0 5 1536 714 176 0 108 chr5 124770061 124770227 -27767032 + B1_Mur1 SINE Alu 2 149 0 5 1536 204 222 0 0 chr5 124770227 124770248 -27767011 + A-rich Low_complexity Low_complexity 24 44 0 5 1536 869 212 71 0 chr5 124771664 124771834 -27765425 - B3 SINE B2 -27 189 8 5 1536 799 256 47 0 chr5 124771868 124772059 -27765200 - ID_B1 SINE B4 -24 200 1 5 1536 234 0 0 0 chr5 124772076 124772102 -27765157 + (CA)n Simple_repeat Simple_repeat 2 27 0 5 1536 1184 107 6 0 chr5 124772390 124772558 -27764701 + B2_Mm1t SINE B2 2 170 -23 5 1536 346 129 0 21 chr5 124772628 124772694 -27764565 + B2_Mm2 SINE B2 47 109 -107 5 1536 27 0 0 0 chr5 124772706 124772733 -27764526 + AT_rich Low_complexity Low_complexity 1 27 0 5 1536 646 210 71 14 chr5 124772945 124773085 -27764174 + B1_Mur3 SINE Alu 2 149 0 5 1536 340 118 26 13 chr5 124773087 124773164 -27764095 + GA-rich Low_complexity Low_complexity 2 79 0 5 1536 324 228 38 32 chr5 124773205 124773328 -27763931 + B1F SINE Alu 26 147 -2 5 1536 861 163 31 21 chr5 124773420 124773612 -27763647 - B3 SINE B2 0 195 1 5 1536 386 259 107 36 chr5 124773700 124773812 -27763447 + PB1D7 SINE Alu 1 120 0 5 1536 1337 97 27 16 chr5 124773823 124774011 -27763248 + B2_Mm1t SINE B2 3 192 -1 6 1536 1468 73 21 0 chr5 124774013 124774204 -27763055 + B2_Mm2 SINE B2 1 195 0 6 1536 359 179 153 12 chr5 124774237 124774322 -27762937 + ID_B1 SINE B4 128 224 0 6 1536 1199 74 0 0 chr5 124774365 124774513 -27762746 - B1_Mus1 SINE Alu 0 148 1 6 1536 384 143 0 16 chr5 124774600 124774664 -27762595 - B1_Mur1 SINE Alu 0 149 87 6 1536 326 195 95 24 chr5 124775262 124775346 -27761913 + RSINE1 SINE B4 16 105 -60 6 1536 219 69 0 0 chr5 124775371 124775400 -27761859 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1536 1218 62 0 0 chr5 124775400 124775546 -27761713 + B1_Mus1 SINE Alu 1 146 -2 6 1536 234 0 0 0 chr5 124775546 124775572 -27761687 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1536 388 266 56 33 chr5 124775588 124775781 -27761478 + L1MB7 LINE L1 5674 5895 -283 6 1536 1300 84 15 31 chr5 124775781 124775977 -27761282 + B2_Mm2 SINE B2 2 194 -1 6 1536 350 313 126 8 chr5 124775977 124776044 -27761215 + L1MB7 LINE L1 5896 5964 -214 6 1536 985 68 0 50 chr5 124776315 124776455 -27760804 + B1_Mus2 SINE Alu 5 137 -10 6 1536 796 168 15 0 chr5 124778736 124778867 -27758392 - B1F2 SINE Alu -15 134 2 6 1536 729 60 0 41 chr5 124779162 124779284 -27757975 - L1Md_F2 LINE L1 0 6582 6466 6 23 383 296 31 0 chr5 124780452 124780550 -27756709 + PB1D10 SINE Alu 8 108 -9 6 1537 657 288 17 94 chr5 124780547 124780743 -27756516 + B4A SINE B4 27 200 -92 6 1537 1273 41 0 0 chr5 124780743 124780890 -27756369 + B1_Mus1 SINE Alu 2 148 0 6 1537 657 288 17 94 chr5 124780890 124780980 -27756279 + B4A SINE B4 201 291 -1 6 1537 401 192 58 27 chr5 124781202 124781292 -27755967 + B1_Mur3 SINE Alu 6 95 -52 6 1537 518 222 6 117 chr5 124781292 124781455 -27755804 + B1_Mur1 SINE Alu 1 145 -4 6 1537 351 231 52 97 chr5 124781455 124781498 -27755761 + B1_Mm SINE Alu 96 133 -14 6 1537 323 333 0 0 chr5 124781496 124781580 -27755679 + ID_B1 SINE B4 141 224 0 6 1537 504 246 128 22 chr5 124782175 124782354 -27754905 - ID_B1 SINE B4 -26 198 1 6 1537 689 212 0 40 chr5 124782716 124782868 -27754391 + B1_Mur1 SINE Alu 2 147 -2 6 1537 250 254 148 1 chr5 124783226 124783312 -27753947 + PB1D10 SINE Alu 2 93 -27 6 1537 226 324 68 77 chr5 124783236 124783353 -27753906 + ID_B1 SINE B4 87 202 -22 6 1537 537 265 66 0 chr5 124783349 124783485 -27753774 - RSINE1 SINE B4 -6 159 15 6 1537 767 153 92 0 chr5 124783603 124783734 -27753525 - B1_Mus2 SINE Alu -2 145 3 6 1537 656 283 22 0 chr5 124785012 124785150 -27752109 - RSINE1 SINE B4 -17 148 8 6 1537 245 184 0 0 chr5 124785155 124785193 -27752066 - RSINE1 SINE B4 -120 45 8 6 1537 263 158 0 0 chr5 124785198 124785236 -27752023 - RSINE1 SINE B4 -120 45 8 6 1537 263 191 0 0 chr5 124785241 124785283 -27751976 - RSINE1 SINE B4 -120 45 4 6 1537 372 265 39 10 chr5 124785288 124785391 -27751868 - PB1D10 SINE Alu -3 114 9 6 1537 325 263 16 12 chr5 124785316 124785414 -27751845 - ID_B1 SINE B4 -125 167 71 6 1537 426 39 0 0 chr5 124785447 124785499 -27751760 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1537 419 284 83 45 chr5 124785508 124785641 -27751618 - RSINE1 SINE B4 -24 141 4 6 1537 396 0 0 0 chr5 124785649 124785693 -27751566 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1537 799 212 50 6 chr5 124785734 124785895 -27751364 - B3A SINE B2 -30 168 1 6 1537 707 191 15 0 chr5 124785948 124786079 -27751180 - B1_Mus2 SINE Alu 0 147 15 6 1537 369 204 45 80 chr5 124785992 124786104 -27751155 - MT2B LTR ERVL -345 256 149 6 1537 359 150 17 0 chr5 124786398 124786458 -27750801 + B1_Mur1 SINE Alu 84 144 -5 6 1537 905 235 56 0 chr5 124786642 124786809 -27750450 + B3 SINE B2 1 167 -49 6 1537 315 0 0 0 chr5 124786809 124786844 -27750415 + (CATA)n Simple_repeat Simple_repeat 4 38 0 6 1537 905 235 56 0 chr5 124786844 124786872 -27750387 + B3 SINE B2 168 206 -10 6 1537 808 188 8 8 chr5 124786882 124787016 -27750243 + B1_Mur3 SINE Alu 2 135 -14 6 1537 499 198 112 9 chr5 124788419 124788526 -27748733 + 5S rRNA rRNA 1 118 -3 6 1537 1008 189 95 0 chr5 124790083 124790273 -27746986 + B3 SINE B2 1 208 -8 6 1537 273 250 39 26 chr5 124790314 124790392 -27746867 - PB1D9 SINE Alu 0 120 42 6 1537 527 304 14 7 chr5 124790932 124791071 -27746188 + B1F SINE Alu 1 140 -9 6 1537 684 279 23 28 chr5 124791081 124791258 -27746001 + B3A SINE B2 1 176 -22 6 1537 1209 44 0 0 chr5 124791282 124791419 -27745840 - B1_Mm SINE Alu -10 137 1 6 1537 389 168 40 29 chr5 124791469 124791560 -27745699 - B2_Mm2 SINE B2 -51 165 66 6 1537 1172 42 0 0 chr5 124791549 124791693 -27745566 + ORR1A1-int LTR MaLR 846 989 -803 6 1537 2509 170 102 12 chr5 124791699 124792280 -27744979 - RMER1B Other Other 0 1066 357 6 1537 267 303 63 88 chr5 124792280 124792350 -27744909 - RSINE1 SINE B4 -9 156 2 6 1537 584 61 32 0 chr5 124792350 124792439 -27744820 - B2_Mm2 SINE B2 -95 103 1 6 1537 498 280 82 0 chr5 124792444 124792626 -27744633 - B3A SINE B2 -1 197 1 6 1537 710 201 41 23 chr5 124792640 124792831 -27744428 - B3 SINE B2 0 195 1 6 1537 557 275 29 14 chr5 124793135 124793275 -27743984 - ID_B1 SINE B4 -3 221 80 6 1537 367 240 120 76 chr5 124793413 124793571 -27743688 + RSINE1 SINE B4 1 165 0 6 1537 27 49 0 0 chr5 124793611 124793652 -27743607 + AT_rich Low_complexity Low_complexity 1 41 0 6 1537 1250 34 0 7 chr5 124793782 124793930 -27743329 + B1_Mus1 SINE Alu 2 148 0 6 1537 555 212 66 29 chr5 124794049 124794185 -27743074 + MTE2a LTR MaLR 225 365 -14 6 1537 225 271 128 12 chr5 124794322 124794408 -27742851 - PB1D10 SINE Alu -13 104 9 6 1537 579 232 48 8 chr5 124794474 124794600 -27742659 + B1_Mur1 SINE Alu 11 141 -8 6 1537 366 114 0 0 chr5 124794696 124794766 -27742493 + (A)n Simple_repeat Simple_repeat 1 70 0 6 1537 1034 57 41 34 chr5 124794919 124795065 -27742194 - B1_Mus1 SINE Alu 0 148 2 6 1537 299 281 96 10 chr5 124795074 124795178 -27742081 - PB1D9 SINE Alu -6 114 2 6 1537 259 217 88 88 chr5 124795315 124795406 -27741853 + PB1D10 SINE Alu 25 115 -2 6 1537 225 297 68 0 chr5 124796357 124796431 -27740828 + ID_B1 SINE B4 84 162 -62 6 1537 1088 73 60 0 chr5 124797131 124797281 -27739978 + B2_Mm1t SINE B2 1 159 -34 6 1537 219 36 0 0 chr5 124797281 124797309 -27739950 + (TTAA)n Simple_repeat Simple_repeat 4 31 0 6 1537 247 275 42 47 chr5 124797312 124797440 -27739819 + L1MB3 LINE L1 5994 6126 -57 6 1537 1059 80 73 0 chr5 124797440 124797577 -27739682 - B1_Mus2 SINE Alu 0 147 1 6 1537 247 275 42 47 chr5 124797577 124797676 -27739583 + L1MB3 LINE L1 6127 6183 0 6 1537 1140 50 50 0 chr5 124797679 124797819 -27739440 + B1_Mus2 SINE Alu 1 147 0 6 1537 1734 21 0 0 chr5 124797822 124798015 -27739244 + B2_Mm1a SINE B2 1 193 0 6 1537 316 244 14 11 chr5 124798467 124798555 -27738704 - AluG_3 SINE Alu -90 221 155 6 1537 309 51 0 0 chr5 124800272 124800311 -27736948 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1537 543 16 0 0 chr5 124800833 124800897 -27736362 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1537 218 259 158 12 chr5 124801845 124801927 -27735332 + MIRm SINE MIR 50 143 -133 6 1537 237 161 31 31 chr5 124804062 124804126 -27733133 + (CGG)n Simple_repeat Simple_repeat 2 65 0 6 1537 22 56 0 0 chr5 124804213 124804249 -27733010 + GC_rich Low_complexity Low_complexity 1 36 0 6 1537 30 0 0 0 chr5 124804277 124804307 -27732952 + GC_rich Low_complexity Low_complexity 1 30 0 6 1537 236 162 13 63 chr5 124804385 124804464 -27732795 + (CCGGG)n Simple_repeat Simple_repeat 2 76 0 6 1537 234 0 0 0 chr5 124804567 124804593 -27732666 + (CCG)n Simple_repeat Simple_repeat 3 28 0 6 1537 30 93 0 0 chr5 124804664 124804750 -27732509 + GC_rich Low_complexity Low_complexity 1 86 0 6 1537 35 24 0 0 chr5 124804778 124804820 -27732439 + GC_rich Low_complexity Low_complexity 1 42 0 6 1537 234 167 0 0 chr5 124804989 124805049 -27732210 + T-rich Low_complexity Low_complexity 1 60 0 6 1537 226 226 36 36 chr5 124805188 124805243 -27732016 - Charlie4z DNA MER1_type -6 161 107 6 1537 286 307 58 29 chr5 124805314 124805418 -27731841 - L2a LINE L2 -16 3410 3304 6 1537 183 129 0 0 chr5 124805446 124805477 -27731782 + (CACCC)n Simple_repeat Simple_repeat 3 33 0 6 1537 336 299 41 41 chr5 124805914 124806109 -27731150 - Charlie5 DNA MER1_type -6 2618 2424 6 1537 466 250 164 0 chr5 124806112 124806240 -27731019 - B1_Mur2 SINE Alu 0 149 1 6 1537 225 0 0 0 chr5 124806255 124806280 -27730979 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 6 1537 241 412 12 0 chr5 124806280 124806365 -27730894 - PB1 SINE Alu -27 100 15 6 1537 227 231 58 0 chr5 124806451 124806503 -27730756 - B1F SINE Alu -68 81 27 6 1537 245 250 0 0 chr5 124806564 124806604 -27730655 - ID SINE ID -140 84 45 6 1537 561 253 115 31 chr5 124806617 124806809 -27730450 - ID_B1 SINE B4 -16 208 1 6 1537 453 198 47 0 chr5 124807021 124807107 -27730152 + B3A SINE B2 1 90 -108 6 1537 22 35 0 0 chr5 124807107 124807136 -27730123 + AT_rich Low_complexity Low_complexity 1 29 0 6 1537 1187 48 14 0 chr5 124807136 124807281 -27729978 + B1_Mus2 SINE Alu 1 147 0 6 1537 1249 99 0 47 chr5 124807307 124807497 -27729762 - B2_Mm2 SINE B2 -14 181 1 6 1537 834 138 237 17 chr5 124807608 124807785 -27729474 - B3 SINE B2 0 216 1 6 1537 442 134 11 89 chr5 124807786 124807876 -27729383 - B1_Mur1 SINE Alu -1 148 66 6 1537 1040 72 0 14 chr5 124807888 124808028 -27729231 - B1_Mus1 SINE Alu 0 148 11 7 1537 232 306 0 14 chr5 124808032 124808105 -27729154 - ID4 SINE ID -10 73 2 7 1537 656 150 8 104 chr5 124808558 124808692 -27728567 - B1_Mus1 SINE Alu -9 139 19 7 1537 276 288 81 0 chr5 124808707 124808818 -27728441 - B1F SINE Alu -7 142 23 7 1537 546 214 71 8 chr5 124808871 124808998 -27728261 - B1F SINE Alu -3 146 12 7 1537 216 0 0 0 chr5 124809099 124809123 -27728136 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1537 484 235 83 16 chr5 124809167 124809288 -27727971 - B3A SINE B2 -65 133 5 7 1537 1164 61 0 13 chr5 124809384 124809533 -27727726 + B1_Mus1 SINE Alu 2 148 0 7 1537 282 95 0 0 chr5 124809533 124809575 -27727684 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1537 426 285 18 131 chr5 124809764 124809986 -27727273 - B3A SINE B2 -1 197 1 7 1537 606 287 14 14 chr5 124810014 124810159 -27727100 - RSINE1 SINE B4 -10 155 11 7 1537 451 274 142 47 chr5 124810177 124810388 -27726871 - B4 SINE B4 -60 232 2 7 1537 189 0 0 0 chr5 124810621 124810642 -27726617 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1537 1164 68 0 7 chr5 124810681 124810830 -27726429 - B1_Mus1 SINE Alu 0 148 1 7 1537 876 148 10 92 chr5 124810841 124811055 -27726204 - B2_Mm2 SINE B2 -5 211 2 7 1537 1457 65 16 0 chr5 124811057 124811241 -27726018 - B2_Mm2 SINE B2 -7 188 2 7 1537 271 272 239 0 chr5 124811280 124811372 -27725887 - RSINE1 SINE B4 -38 127 14 7 1537 2122 113 28 16 chr5 124811394 124811717 -27725542 + ORR1A2 LTR MaLR 1 327 0 7 1537 333 201 32 25 chr5 124811746 124811826 -27725433 - RLTR41 LTR ERV1 -63 383 294 7 1537 586 156 143 32 chr5 124811848 124811974 -27725285 + B1_Mus2 SINE Alu 1 140 -7 7 1537 1146 88 0 13 chr5 124811982 124812132 -27725127 + B1_Mus1 SINE Alu 1 148 0 7 1537 207 98 23 47 chr5 124812132 124812167 -27725092 + A-rich Low_complexity Low_complexity 9 44 0 7 1537 542 254 71 60 chr5 124812266 124812450 -27724809 + B3A SINE B2 2 187 -11 7 1537 593 298 59 27 chr5 124812714 124812882 -27724377 - B3A SINE B2 -1 197 22 7 1537 2375 129 134 159 chr5 124812882 124813481 -27723778 - MT2B2 LTR ERVL 0 584 1 7 1537 593 298 59 27 chr5 124813481 124813498 -27723761 - B3A SINE B2 -177 21 6 7 1537 280 297 75 75 chr5 124813796 124813865 -27723394 + B4A SINE B4 2 77 -215 7 1537 204 40 0 0 chr5 124813865 124813890 -27723369 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 7 1537 319 313 210 46 chr5 124813890 124814079 -27723180 + B4A SINE B4 78 291 -1 7 1537 532 296 43 58 chr5 124814614 124814822 -27722437 + MER20 DNA MER1_type 2 206 -13 7 1537 1184 43 14 0 chr5 124814954 124815094 -27722165 - B1_Mm SINE Alu -5 142 1 7 1537 295 262 0 0 chr5 124815136 124815197 -27722062 - ID4_ SINE ID -2 81 21 7 1537 1114 97 7 0 chr5 124815213 124815358 -27721901 - B1_Mm SINE Alu 0 147 2 7 1537 308 222 0 0 chr5 124815396 124815450 -27721809 - B1_Mm SINE Alu 0 147 94 7 1537 429 316 25 25 chr5 124815453 124815573 -27721686 - B1F SINE Alu -13 136 17 7 1537 1179 49 7 14 chr5 124815588 124815734 -27721525 - B1_Mus2 SINE Alu -2 145 1 7 1537 238 75 0 0 chr5 124815748 124815788 -27721471 + B1_Mur4 SINE Alu 111 150 0 7 1537 180 0 0 0 chr5 124815788 124815808 -27721451 + (GAAAA)n Simple_repeat Simple_repeat 5 24 0 7 1537 429 70 0 0 chr5 124815810 124815867 -27721392 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 7 1537 612 229 71 0 chr5 124816017 124816157 -27721102 + B1_Mur4 SINE Alu 1 150 0 7 1537 1243 61 0 0 chr5 124816161 124816308 -27720951 + B1_Mus1 SINE Alu 2 148 0 7 1537 1242 76 35 0 chr5 124816337 124816509 -27720750 + B2_Mm2 SINE B2 16 193 -2 7 1537 485 181 207 0 chr5 124816686 124816802 -27720457 + B1_Mur4 SINE Alu 3 142 -8 7 1537 674 242 152 0 chr5 124816825 124817003 -27720256 - B3 SINE B2 -9 207 3 7 1537 375 218 45 22 chr5 124817146 124817235 -27720024 - B1_Mur1 SINE Alu -13 136 46 7 1537 1107 58 0 0 chr5 124817254 124817393 -27719866 - B1_Mus1 SINE Alu 0 148 10 7 1537 422 209 30 122 chr5 124817289 124817420 -27719839 - MT2B LTR ERVL -337 264 146 7 1537 188 235 161 23 chr5 124817705 124817792 -27719467 + MIR SINE MIR 87 185 -77 7 1537 187 146 18 18 chr5 124818746 124818802 -27718457 + A-rich Low_complexity Low_complexity 6 61 0 7 1537 23 0 0 0 chr5 124820699 124820722 -27716537 + AT_rich Low_complexity Low_complexity 1 23 0 7 1537 207 139 0 0 chr5 124823276 124823312 -27713947 + (A)n Simple_repeat Simple_repeat 1 36 0 7 1537 218 191 0 0 chr5 124824238 124824285 -27712974 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1537 210 37 0 0 chr5 124824690 124824717 -27712542 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1537 1140 62 7 0 chr5 124825207 124825351 -27711908 - B1_Mm SINE Alu 0 147 3 7 1537 1565 32 21 11 chr5 124825782 124825973 -27711286 - B2_Mm1a SINE B2 0 193 1 7 1537 245 287 99 107 chr5 124826788 124826909 -27710350 + RSINE1 SINE B4 46 165 0 7 1537 536 319 14 29 chr5 124826952 124827091 -27710168 - B3A SINE B2 -61 137 1 7 1537 606 186 169 0 chr5 124827107 124827225 -27710034 - B1_Mus2 SINE Alu -9 138 1 7 1537 307 218 24 60 chr5 124827403 124827486 -27709773 + HAL1-3A_ME LINE L1 1970 2049 -809 7 1537 278 250 14 14 chr5 124827526 124827599 -27709660 - ID_B1 SINE B4 -11 213 141 7 1537 878 0 0 0 chr5 124827727 124827837 -27709422 + L1Md_T LINE L1 6473 6582 0 7 1537 1094 73 164 0 chr5 124827857 124828022 -27709237 + B2_Mm2 SINE B2 2 193 -2 7 1537 1137 88 0 0 chr5 124828034 124828181 -27709078 + B1_Mus1 SINE Alu 2 148 0 7 1537 786 134 0 0 chr5 124828184 124828311 -27708948 + (GA)n Simple_repeat Simple_repeat 2 128 0 7 1537 827 106 184 7 chr5 124829010 124829162 -27708097 + B2_Mm2 SINE B2 2 180 -15 7 1537 192 40 0 0 chr5 124829163 124829188 -27708071 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1537 330 87 0 0 chr5 124829706 124829752 -27707507 + (CCTA)n Simple_repeat Simple_repeat 1 46 0 7 1537 212 265 0 0 chr5 124829753 124829802 -27707457 - PB1D10 SINE Alu -26 91 43 7 1537 444 280 14 50 chr5 124829821 124829960 -27707299 - B1_Mm SINE Alu -5 142 9 7 1537 289 207 292 22 chr5 124830263 124830352 -27706907 - Lx8 LINE L1 -174 7299 7187 7 1537 549 191 36 18 chr5 124830495 124830607 -27706652 - PB1D9 SINE Alu -5 115 2 7 1537 310 235 48 24 chr5 124831342 124831425 -27705834 + B1_Mur2 SINE Alu 58 142 -7 7 1537 333 206 81 11 chr5 124832271 124832368 -27704891 - B3 SINE B2 -80 113 4 7 1537 1412 70 0 16 chr5 124832378 124832567 -27704692 - B2_Mm2 SINE B2 -9 186 1 7 1537 630 180 30 72 chr5 124832577 124832707 -27704552 - B1_Mus1 SINE Alu -8 140 16 7 1537 262 320 78 104 chr5 124832707 124832769 -27704490 - B4 SINE B4 -74 218 32 7 1537 217 340 0 96 chr5 124832771 124832875 -27704384 - PB1D10 SINE Alu -23 94 1 7 1537 235 319 0 55 chr5 124832816 124832889 -27704370 - B4 SINE B4 -152 140 72 7 1537 607 184 38 38 chr5 124832898 124833056 -27704203 - RMER10B LTR ERVL -45 353 196 7 1537 702 184 0 41 chr5 124833204 124833351 -27703908 - B1_Mur4 SINE Alu 0 150 10 7 1537 1152 48 0 20 chr5 124833367 124833517 -27703742 - B1_Mus2 SINE Alu 0 147 1 7 1537 314 185 0 0 chr5 124833702 124833756 -27703503 + B1_Mus2 SINE Alu 19 72 -75 7 1537 258 274 31 31 chr5 124833818 124833916 -27703343 + PB1D7 SINE Alu 23 120 0 7 1537 215 352 48 136 chr5 124833921 124834050 -27703209 + B4 SINE B4 2 121 -171 7 1537 700 219 42 21 chr5 124834050 124834241 -27703018 + B2_Mm2 SINE B2 1 195 0 7 1537 215 352 48 136 chr5 124834241 124834361 -27702898 + B4 SINE B4 122 229 -63 7 1537 361 224 42 51 chr5 124834634 124834748 -27702511 + B3 SINE B2 1 120 -75 7 1537 1057 56 35 0 chr5 124834961 124835103 -27702156 + B1_Mus2 SINE Alu 1 147 0 7 1537 327 78 0 0 chr5 124835109 124835160 -27702099 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1537 453 234 35 42 chr5 124835317 124835460 -27701799 + B1F2 SINE Alu 8 149 0 7 1537 594 295 39 15 chr5 124835586 124835789 -27701470 - B3 SINE B2 -1 215 8 7 1537 28 0 0 0 chr5 124835806 124835834 -27701425 + AT_rich Low_complexity Low_complexity 1 28 0 7 1537 409 163 95 32 chr5 124836124 124836219 -27701040 - B1_Mur1 SINE Alu 0 149 49 7 1537 757 270 16 5 chr5 124836251 124836441 -27700818 - B3 SINE B2 -11 205 14 7 1537 1090 95 0 7 chr5 124836526 124836674 -27700585 - B1_Mm SINE Alu 0 147 1 7 1537 189 0 0 0 chr5 124836944 124836965 -27700294 + (A)n Simple_repeat Simple_repeat 1 21 0 7 1537 286 343 9 18 chr5 124837701 124837811 -27699448 - ID_B1 SINE B4 -32 192 84 7 1537 1011 133 0 0 chr5 124837829 124837994 -27699265 + (GA)n Simple_repeat Simple_repeat 2 166 0 7 1537 235 300 0 0 chr5 124839034 124839094 -27698165 + ID4_ SINE ID 4 63 -20 7 1537 416 215 6 24 chr5 124839162 124839276 -27697983 + PB1D10 SINE Alu 24 136 -13 7 1537 266 271 0 0 chr5 124839264 124839323 -27697936 + PB1 SINE Alu 25 83 -44 7 1537 1135 75 0 33 chr5 124839326 124839478 -27697781 + B1_Mm SINE Alu 1 147 0 7 1537 250 286 104 0 chr5 124839596 124839673 -27697586 - PB1D10 SINE Alu -26 91 7 7 1537 31 26 0 0 chr5 124839876 124839914 -27697345 + AT_rich Low_complexity Low_complexity 1 38 0 8 1537 374 277 24 45 chr5 124840117 124840256 -27697003 + B3 SINE B2 46 192 -6 8 1537 484 217 17 34 chr5 124840258 124840377 -27696882 - B1_Mus2 SINE Alu -21 126 10 8 1537 386 204 11 54 chr5 124840761 124840854 -27696405 - PB1D9 SINE Alu 0 120 32 8 1537 531 208 29 51 chr5 124840909 124841046 -27696213 - B1_Mur4 SINE Alu 0 150 17 8 1537 862 215 21 16 chr5 124842326 124842520 -27694739 + B2_Mm2 SINE B2 1 195 0 8 1537 213 131 39 115 chr5 124843311 124843363 -27693896 + B1_Mur1 SINE Alu 97 144 -5 8 1537 320 258 308 0 chr5 124843553 124843673 -27693586 - B3A SINE B2 -41 157 1 8 1537 228 273 0 0 chr5 124843691 124843746 -27693513 - B1_Mus2 SINE Alu 0 147 93 8 1537 414 39 0 0 chr5 124844071 124844123 -27693136 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1537 618 231 0 0 chr5 124844123 124844240 -27693019 - B1_Mur4 SINE Alu -32 118 2 8 1537 435 301 79 62 chr5 124844586 124844600 -27692659 + ID_B1 SINE B4 70 123 -169 8 1537 527 271 22 8 chr5 124844600 124844734 -27692525 + B1_Mur1 SINE Alu 1 136 -13 8 1537 435 301 79 62 chr5 124844734 124844763 -27692496 + ID_B1 SINE B4 124 249 -43 8 1537 351 288 106 14 chr5 124845067 124845208 -27692051 + RSINE1 SINE B4 2 155 -10 8 1537 180 0 0 0 chr5 124845667 124845687 -27691572 + (TTC)n Simple_repeat Simple_repeat 2 21 0 8 1537 1207 48 7 0 chr5 124845687 124845834 -27691425 - B1_Mus1 SINE Alu 0 148 1 8 1537 517 280 66 59 chr5 124846264 124846552 -27690707 + B4A SINE B4 1 290 -2 8 1537 322 285 10 29 chr5 124846615 124846719 -27690540 + PB1 SINE Alu 5 107 -20 8 1537 198 0 0 0 chr5 124847088 124847110 -27690149 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1537 1213 92 29 0 chr5 124847117 124847291 -27689968 + B2_Mm1t SINE B2 1 179 -14 8 1537 240 42 60 40 chr5 124847451 124847501 -27689758 + B2_Mm2 SINE B2 137 187 -8 8 1537 498 238 104 64 chr5 124847509 124847711 -27689548 - B3 SINE B2 -6 210 1 8 1537 385 242 44 6 chr5 124847739 124847850 -27689409 - PB1D9 SINE Alu -7 120 3 8 1537 328 297 62 62 chr5 124847902 124848096 -27689163 - B2_Mm2 SINE B2 -1 194 1 8 1537 25 0 0 0 chr5 124848595 124848620 -27688639 + AT_rich Low_complexity Low_complexity 1 25 0 8 1537 499 196 29 29 chr5 124848696 124848801 -27688458 + PB1D9 SINE Alu 3 107 -13 8 1537 240 204 0 20 chr5 124848924 124848974 -27688285 - B1_Mus1 SINE Alu -92 56 8 8 1537 410 203 246 0 chr5 124849252 124849370 -27687889 - B1_Mus1 SINE Alu -1 147 1 8 1537 238 333 69 17 chr5 124849428 124849544 -27687715 + B1F SINE Alu 27 148 -1 8 1537 471 186 185 82 chr5 124849620 124849755 -27687504 + B1_Mur2 SINE Alu 1 149 0 8 1537 194 0 39 0 chr5 124849761 124849787 -27687472 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1537 593 246 46 0 chr5 124849797 124849927 -27687332 + B1_Mus1 SINE Alu 1 136 -12 8 1537 421 236 44 73 chr5 124850264 124850401 -27686858 + B1F2 SINE Alu 17 149 0 8 1537 1627 32 11 0 chr5 124851587 124851776 -27685483 + B2_Mm1a SINE B2 3 193 0 8 1537 198 103 0 0 chr5 124852235 124852264 -27684995 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1537 228 200 91 15 chr5 124852575 124852641 -27684618 + tRNA-Ala-GCY_ tRNA tRNA 2 72 -3 8 1537 457 258 121 0 chr5 124853044 124853176 -27684083 + B1F1 SINE Alu 2 149 0 8 1537 255 229 41 111 chr5 124853182 124853299 -27683960 + B1F SINE Alu 14 117 0 8 1537 1334 97 11 16 chr5 124853320 124853509 -27683750 - B2_Mm2 SINE B2 -6 189 2 8 1537 617 194 112 0 chr5 124854989 124855123 -27682136 - B1_Mur4 SINE Alu 0 150 2 8 1537 491 254 63 52 chr5 124855199 124855390 -27681869 + B3A SINE B2 1 193 -5 8 1537 289 184 264 0 chr5 124855403 124855490 -27681769 + B1_Mus2 SINE Alu 15 124 -23 8 1537 252 0 0 0 chr5 124855493 124855521 -27681738 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 8 1537 296 242 182 16 chr5 124856409 124856535 -27680724 + B1_Mur3 SINE Alu 3 149 0 8 1537 393 22 0 0 chr5 124856825 124856871 -27680388 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1537 266 248 19 19 chr5 124856871 124856974 -27680285 + GA-rich Low_complexity Low_complexity 2 104 0 8 1537 210 158 0 0 chr5 124857142 124857180 -27680079 + CT-rich Low_complexity Low_complexity 2 39 0 8 1537 467 170 85 0 chr5 124858311 124858405 -27678854 - B1_Mus2 SINE Alu 0 147 46 8 1537 24 32 0 0 chr5 124858764 124858795 -27678464 + AT_rich Low_complexity Low_complexity 1 31 0 8 1537 505 267 30 0 chr5 124859001 124859136 -27678123 + B1_Mur1 SINE Alu 11 149 0 8 1537 1131 70 0 0 chr5 124859139 124859281 -27677978 + B1_Mm SINE Alu 1 142 -5 8 1537 255 31 0 0 chr5 124859283 124859315 -27677944 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 8 1537 528 59 0 0 chr5 124859316 124859384 -27677875 + (GAAA)n Simple_repeat Simple_repeat 3 70 0 8 1537 324 0 0 0 chr5 124859384 124859420 -27677839 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 8 1537 745 104 167 8 chr5 124859484 124859610 -27677649 + B1_Mus1 SINE Alu 2 147 -1 8 1537 256 250 9 103 chr5 124859654 124859761 -27677498 + B3A SINE B2 102 198 0 8 1537 1276 78 5 86 chr5 124859805 124860015 -27677244 + B2_Mm1t SINE B2 1 193 0 8 1537 1096 93 122 0 chr5 124860924 124861096 -27676163 + B2_Mm1t SINE B2 1 193 0 8 1537 198 0 0 0 chr5 124861185 124861207 -27676052 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 8 1537 1169 43 0 7 chr5 124861209 124861351 -27675908 - B1_Mus2 SINE Alu -6 141 1 8 1537 1179 123 34 0 chr5 124861358 124861537 -27675722 - B2_Mm1a SINE B2 -7 186 2 8 1537 583 142 97 0 chr5 124861585 124861698 -27675561 + B1_Mur3 SINE Alu 26 149 0 8 1537 1383 91 37 0 chr5 124861926 124862113 -27675146 - B2_Mm2 SINE B2 -1 194 1 8 1537 281 176 0 0 chr5 124862559 124862610 -27674649 + ID_B1 SINE B4 174 224 0 8 1537 353 308 24 130 chr5 124863416 124863522 -27673737 + ID_B1 SINE B4 2 219 -3 8 1537 695 197 7 7 chr5 124863522 124863660 -27673599 + B1_Mus2 SINE Alu 5 142 -5 8 1537 219 167 0 0 chr5 124863676 124863718 -27673541 + GA-rich Low_complexity Low_complexity 2 43 0 8 1537 608 13 26 0 chr5 124864029 124864105 -27673154 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 8 1537 591 132 274 0 chr5 124864105 124864211 -27673048 - B1_Mus1 SINE Alu -12 136 2 8 1537 380 269 0 0 chr5 124864242 124864320 -27672939 + ID4_ SINE ID 2 79 -4 8 1537 770 101 0 0 chr5 124864729 124864848 -27672411 + B1_Mus1 SINE Alu 1 119 -29 8 1537 1318 86 42 31 chr5 124865220 124865413 -27671846 + B2_Mm2 SINE B2 1 195 0 8 1537 798 197 146 0 chr5 124865501 124865679 -27671580 + B3 SINE B2 1 204 -12 8 1537 1301 73 57 0 chr5 124865704 124865881 -27671378 + B2_Mm2 SINE B2 2 188 -7 8 1537 21 0 0 31 chr5 124865881 124865895 -27671364 + AT_rich Low_complexity Low_complexity 1 14 0 8 1537 1268 27 0 0 chr5 124865895 124866042 -27671217 - B1_Mus2 SINE Alu 0 147 1 8 1537 21 0 0 31 chr5 124866042 124866059 -27671200 + AT_rich Low_complexity Low_complexity 1 17 0 8 1537 421 167 28 0 chr5 124866825 124866908 -27670351 + B3A SINE B2 2 87 -129 8 1537 240 59 0 0 chr5 124866959 124866993 -27670266 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1537 1569 52 0 16 chr5 124867020 124867214 -27670045 + B2_Mm1a SINE B2 1 191 -2 8 1537 433 205 154 43 chr5 124867216 124867333 -27669926 - B1_Mur3 SINE Alu -15 134 5 8 1537 1544 52 5 16 chr5 124867543 124867737 -27669522 + B2_Mm1t SINE B2 2 193 0 8 1537 1172 41 21 0 chr5 124867755 124867900 -27669359 + B1_Mus1 SINE Alu 1 148 0 8 1537 912 129 14 21 chr5 124867923 124868065 -27669194 + B1_Mur4 SINE Alu 1 141 -9 8 1537 1204 49 0 0 chr5 124868471 124868615 -27668644 + B1_Mus2 SINE Alu 1 144 -3 8 1537 233 29 29 0 chr5 124868615 124868649 -27668610 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1537 226 217 0 0 chr5 124868848 124868894 -27668365 + B1_Mus2 SINE Alu 95 140 -7 8 1537 229 200 81 32 chr5 124869350 124869412 -27667847 - PB1D10 SINE Alu -2 115 51 8 1537 274 189 278 0 chr5 124869464 124869554 -27667705 + PB1D9 SINE Alu 6 120 0 8 1537 1027 112 0 0 chr5 124869581 124869724 -27667535 + B1_Mus1 SINE Alu 2 144 -4 8 1537 244 293 121 0 chr5 124869775 124869874 -27667385 - RSINE1 SINE B4 -31 134 24 8 1537 896 220 22 59 chr5 124870011 124870138 -27667121 + B3 SINE B2 1 126 -90 8 1537 961 71 49 28 chr5 124870138 124870282 -27666977 - B1_Mus1 SINE Alu 0 148 2 8 1537 896 220 22 59 chr5 124870282 124870376 -27666883 + B3 SINE B2 127 214 -2 8 1537 43 0 0 0 chr5 124870376 124870419 -27666840 + AT_rich Low_complexity Low_complexity 1 43 0 8 1537 625 212 28 42 chr5 124870611 124870754 -27666505 + B1_Mus2 SINE Alu 7 147 0 8 1537 543 212 14 50 chr5 124870943 124871082 -27666177 + B1_Mus2 SINE Alu 13 146 -1 8 1537 401 296 0 0 chr5 124871140 124871238 -27666021 + ID_B1 SINE B4 102 199 -25 8 1537 238 196 43 11 chr5 124871240 124871333 -27665926 + (TA)n Simple_repeat Simple_repeat 2 97 0 8 1537 724 164 22 0 chr5 124871356 124871490 -27665769 + B1_Mur3 SINE Alu 3 139 -10 8 1537 327 85 0 0 chr5 124871490 124871537 -27665722 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1537 555 216 47 16 chr5 124871540 124871667 -27665592 + B1_Mur2 SINE Alu 19 149 0 9 1537 229 227 187 0 chr5 124871724 124871799 -27665460 - PB1D10 SINE Alu -6 111 23 9 1537 387 155 23 45 chr5 124872058 124872146 -27665113 + B1_Mur1 SINE Alu 64 149 0 9 1537 309 343 91 6 chr5 124872208 124872384 -27664875 + MER2 DNA MER2_type 150 340 -5 9 1537 1055 86 0 7 chr5 124872385 124872526 -27664733 + B1_Mus2 SINE Alu 2 141 -6 9 1537 237 33 0 0 chr5 124872528 124872558 -27664701 + (CAA)n Simple_repeat Simple_repeat 2 31 0 9 1537 658 133 205 16 chr5 124872879 124873001 -27664258 + B1_Mur2 SINE Alu 2 146 -3 9 1537 256 252 274 18 chr5 124873032 124873145 -27664114 - RSINE1 SINE B4 -21 144 3 9 1537 239 186 232 51 chr5 124873337 124873442 -27663817 + B1F1 SINE Alu 3 115 -2 9 1537 225 0 0 0 chr5 124873489 124873514 -27663745 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1537 935 80 64 14 chr5 124873514 124873654 -27663605 - B1_Mus1 SINE Alu 0 148 2 9 1537 216 0 0 0 chr5 124873857 124873881 -27663378 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1537 1083 105 65 16 chr5 124873900 124874084 -27663175 + B2_Mm1t SINE B2 1 193 0 9 1537 180 0 0 0 chr5 124875230 124875250 -27662009 + (GCTG)n Simple_repeat Simple_repeat 1 20 0 9 1537 189 121 0 0 chr5 124875528 124875561 -27661698 + (CGG)n Simple_repeat Simple_repeat 3 35 0 9 1537 208 288 0 0 chr5 124875689 124875748 -27661511 + C-rich Low_complexity Low_complexity 5 63 0 9 1537 182 37 0 36 chr5 124876044 124876072 -27661187 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 9 1537 1119 68 7 0 chr5 124876294 124876441 -27660818 - B1_Mus1 SINE Alu 0 148 1 9 1537 672 234 14 7 chr5 124876930 124877076 -27660183 + B1_Mus2 SINE Alu 1 147 0 9 1537 541 233 263 15 chr5 124877132 124877406 -27659853 - MTD LTR MaLR -67 352 11 9 1537 30 0 0 0 chr5 124877480 124877510 -27659749 + AT_rich Low_complexity Low_complexity 1 30 0 9 1537 1130 88 0 0 chr5 124877510 124877658 -27659601 - B1_Mus1 SINE Alu 0 148 1 9 1537 347 279 29 0 chr5 124877668 124877772 -27659487 - B1F SINE Alu -7 142 36 9 1537 364 225 78 8 chr5 124877893 124878057 -27659202 - L1MA5A LINE L1 -320 5980 5793 9 1537 246 268 24 12 chr5 124878057 124878140 -27659119 - ID_B1 SINE B4 0 224 141 9 1537 23 0 0 0 chr5 124878142 124878165 -27659094 + AT_rich Low_complexity Low_complexity 1 23 0 9 1537 186 43 0 0 chr5 124878168 124878191 -27659068 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1537 1144 65 0 0 chr5 124878191 124878330 -27658929 - B1_Mus1 SINE Alu -9 139 1 9 1537 918 159 206 0 chr5 124878333 124878503 -27658756 - B3 SINE B2 -10 206 2 9 1537 476 256 95 0 chr5 124878566 124878728 -27658531 - L1MA5A LINE L1 -515 5785 5610 9 1537 2414 122 60 33 chr5 124878747 124879196 -27658063 + RMER4A LTR ERVK 6 466 0 9 1537 1103 89 0 0 chr5 124879228 124879374 -27657885 - B1_Mus2 SINE Alu 0 147 2 9 1537 1010 254 52 11 chr5 124879468 124879739 -27657520 + MTEa LTR MaLR 94 375 -4 9 1537 195 42 0 0 chr5 124879786 124879810 -27657449 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 1537 632 229 7 7 chr5 124879810 124879946 -27657313 - B1_Mus2 SINE Alu -10 137 1 9 1537 230 197 229 0 chr5 124880060 124880121 -27657138 - PB1D9 SINE Alu -39 81 7 9 1537 252 0 0 0 chr5 124880135 124880163 -27657096 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 9 1537 537 275 14 7 chr5 124880188 124880331 -27656928 + B1_Mur1 SINE Alu 4 147 -2 9 1537 1202 119 11 0 chr5 124880395 124880571 -27656688 + B2_Mm1t SINE B2 1 178 -15 9 1537 26 50 0 0 chr5 124880677 124880717 -27656542 + AT_rich Low_complexity Low_complexity 1 40 0 9 1537 743 309 48 0 chr5 124880747 124881058 -27656201 - L1MA5A LINE L1 -862 5281 4956 9 1537 1023 88 0 76 chr5 124881105 124881210 -27656049 + B2_Mm2 SINE B2 1 105 -90 9 1537 225 0 0 0 chr5 124881210 124881235 -27656024 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9 1537 1160 43 0 0 chr5 124881235 124881373 -27655886 - B1_Mm SINE Alu -9 138 1 9 1537 1023 88 0 76 chr5 124881373 124881438 -27655821 + B2_Mm2 SINE B2 106 158 -37 9 1537 225 0 0 0 chr5 124881438 124881463 -27655796 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 9 1537 361 268 132 66 chr5 124881463 124881615 -27655644 + RSINE1 SINE B4 4 165 0 9 1537 767 164 21 21 chr5 124881649 124881792 -27655467 + B1_Mus1 SINE Alu 1 143 -5 9 1537 679 240 162 0 chr5 124881819 124881998 -27655261 + ID_B1 SINE B4 8 215 -9 9 1537 449 198 41 20 chr5 124882043 124882141 -27655118 + RSINE1 SINE B4 42 141 -24 9 1537 1101 89 0 14 chr5 124882192 124882340 -27654919 + B1_Mus2 SINE Alu 1 146 -1 9 1537 752 196 28 7 chr5 124882382 124882526 -27654733 - B1_Mur2 SINE Alu -1 148 2 9 1537 447 271 9 18 chr5 124882535 124882644 -27654615 - B3 SINE B2 -42 174 67 9 1537 306 232 219 0 chr5 124882833 124882915 -27654344 + PB1D10 SINE Alu 12 111 -6 9 1537 251 128 0 0 chr5 124883699 124883738 -27653521 + B1_Mus2 SINE Alu 101 139 -8 9 1537 458 33 0 16 chr5 124883738 124883799 -27653460 + (GGGA)n Simple_repeat Simple_repeat 2 61 0 9 1537 1196 42 0 14 chr5 124883831 124883976 -27653283 - B1_Mm SINE Alu 0 147 5 9 1537 198 0 0 0 chr5 124884420 124884442 -27652817 + (TG)n Simple_repeat Simple_repeat 2 23 0 9 1537 25 0 0 0 chr5 124884565 124884590 -27652669 + AT_rich Low_complexity Low_complexity 1 25 0 9 1537 497 65 0 38 chr5 124884602 124884682 -27652577 - L1Md_F2 LINE L1 -4 6578 6502 9 1537 224 30 30 0 chr5 124884682 124884715 -27652544 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1537 795 29 0 9 chr5 124884715 124884821 -27652438 - B1_Mm SINE Alu -3 144 40 9 1537 255 31 0 0 chr5 124884824 124884856 -27652403 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 9 1537 766 77 0 0 chr5 124884859 124884963 -27652296 - B1_Mus1 SINE Alu -5 143 40 9 1537 1068 72 7 7 chr5 124884993 124885132 -27652127 + B1_Mus2 SINE Alu 2 140 -7 9 1537 231 133 0 22 chr5 124885267 124885313 -27651946 + (TTGG)n Simple_repeat Simple_repeat 2 46 0 9 1537 1354 104 5 5 chr5 124885317 124885510 -27651749 - B2_Mm1a SINE B2 0 193 1 9 1537 813 176 0 34 chr5 124885520 124885667 -27651592 - B1_Mur3 SINE Alu -7 142 1 9 1537 458 260 58 63 chr5 124885787 124885992 -27651267 - B3 SINE B2 0 216 13 9 1537 292 223 32 0 chr5 124886138 124886247 -27651012 + B1F1 SINE Alu 1 142 -7 9 1537 494 245 161 143 chr5 124886257 124886543 -27650716 + B4 SINE B4 2 292 0 9 1537 1113 35 14 34 chr5 124886605 124886752 -27650507 - B1_Mus1 SINE Alu 0 148 5 9 1537 1018 78 43 0 chr5 124886938 124887079 -27650180 + B1_Mus1 SINE Alu 2 148 0 9 1537 528 294 182 0 chr5 124887088 124887258 -27650001 - B3 SINE B2 -14 202 2 9 1537 697 243 7 33 chr5 124887279 124887432 -27649827 + B1_Mur1 SINE Alu 1 149 0 9 1537 1136 83 7 0 chr5 124887435 124887580 -27649679 + B1_Mus2 SINE Alu 1 146 -1 9 1537 337 82 0 20 chr5 124887627 124887677 -27649582 + B2_Mm2 SINE B2 47 95 -100 9 1537 26 0 0 0 chr5 124887693 124887719 -27649540 + AT_rich Low_complexity Low_complexity 1 26 0 9 1537 736 218 0 7 chr5 124887742 124887885 -27649374 + B1_Mus2 SINE Alu 1 142 -5 9 1537 506 273 47 0 chr5 124887933 124888061 -27649198 - B1_Mus1 SINE Alu -1 147 14 9 1537 279 54 0 0 chr5 124888075 124888112 -27649147 + (TC)n Simple_repeat Simple_repeat 2 38 0 9 1537 1125 69 21 0 chr5 124888138 124888282 -27648977 - B1_Mus2 SINE Alu 0 147 1 9 1537 672 192 78 46 chr5 124888287 124888440 -27648819 - B3 SINE B2 0 216 59 9 1537 252 251 58 2 chr5 124888417 124888493 -27648766 - PB1D7 SINE Alu -35 85 7 9 1537 522 180 25 75 chr5 124888790 124888910 -27648349 - B1_Mus2 SINE Alu -2 145 32 9 1537 664 264 20 9 chr5 124888903 124889062 -27648197 - RSINE1 SINE B4 -2 163 4 9 1537 189 235 19 38 chr5 124890826 124890879 -27646380 - L2a LINE L2 -2 3424 3373 9 1537 492 331 0 34 chr5 124891077 124891224 -27646035 - B1F2 SINE Alu -1 148 7 9 1537 198 0 0 0 chr5 124891241 124891263 -27645996 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 9 1537 1560 42 0 35 chr5 124891358 124891558 -27645701 - B2_Mm1t SINE B2 0 193 1 9 1537 1039 198 30 10 chr5 124891582 124891781 -27645478 - B3 SINE B2 -5 211 9 9 1537 329 243 68 0 chr5 124891802 124891876 -27645383 + B3 SINE B2 131 209 -7 9 1537 836 191 0 20 chr5 124891900 124892050 -27645209 + B1_Mus2 SINE Alu 1 147 0 9 1537 812 161 8 0 chr5 124892405 124892535 -27644724 - B1_Mur4 SINE Alu -7 143 13 9 1537 308 218 43 40 chr5 124892557 124892657 -27644602 - B1F SINE Alu 0 117 28 9 1537 2308 163 40 29 chr5 124892610 124893090 -27644169 - RMER6A LTR ERVK -71 685 201 9 1537 1189 75 0 0 chr5 124893111 124893258 -27644001 - B1_Mus2 SINE Alu 0 147 1 9 1537 199 312 204 0 chr5 124893591 124893684 -27643575 + MIRm SINE MIR 46 157 -119 9 1537 1371 70 32 0 chr5 124893760 124893946 -27643313 - B2_Mm2 SINE B2 -3 192 1 9 1537 1132 68 0 33 chr5 124894011 124894162 -27643097 - B1_Mus1 SINE Alu -2 146 1 9 1537 336 275 62 0 chr5 124894254 124894334 -27642925 - B1F SINE Alu -52 97 13 9 1537 252 274 0 31 chr5 124894368 124894432 -27642827 - ID4_ SINE ID 0 83 22 9 1537 248 322 118 0 chr5 124894405 124894557 -27642702 - B4 SINE B4 -12 280 111 9 1537 610 61 31 3 chr5 124894466 124894559 -27642700 - B1_Mus1 SINE Alu 0 120 24 1 1537 300 315 61 27 chr5 124895008 124895155 -27642104 + MIRb SINE MIR 84 235 -33 1 1537 23 0 0 0 chr5 124895400 124895423 -27641836 + GC_rich Low_complexity Low_complexity 1 23 0 1 1537 44 84 0 0 chr5 124895451 124895558 -27641701 + GC_rich Low_complexity Low_complexity 1 107 0 1 1537 225 196 0 0 chr5 124895619 124895670 -27641589 + (CGG)n Simple_repeat Simple_repeat 3 53 0 1 1537 28 48 0 0 chr5 124895893 124895935 -27641324 + GC_rich Low_complexity Low_complexity 1 42 0 1 1537 246 105 0 0 chr5 124896000 124896038 -27641221 + (CGG)n Simple_repeat Simple_repeat 3 40 0 1 1537 277 260 33 22 chr5 124897868 124897973 -27639286 + BC1_Mm scRNA scRNA 3 108 -44 1 1537 289 215 123 0 chr5 124898093 124898158 -27639101 + ID4_ SINE ID 2 74 -9 1 1537 195 100 0 0 chr5 124899023 124899053 -27638206 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1537 398 326 62 8 chr5 124899066 124899196 -27638063 - RSINE1 SINE B4 -19 146 10 1 1537 334 210 37 12 chr5 124899259 124899341 -27637918 - ID4_ SINE ID -60 92 9 1 1537 597 214 31 23 chr5 124899365 124899508 -27637751 - ID_B1 SINE B4 -13 211 69 1 1537 1326 274 54 47 chr5 124899519 124900090 -27637169 - L1MB7 LINE L1 -58 6126 5552 1 1537 383 0 21 0 chr5 124901021 124901068 -27636191 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1537 180 0 0 0 chr5 124901423 124901443 -27635816 + (TGGGGG)n Simple_repeat Simple_repeat 4 23 0 1 1537 386 319 22 22 chr5 124901730 124901868 -27635391 + B1F2 SINE Alu 11 148 -1 1 1537 327 247 56 93 chr5 124901905 124902012 -27635247 + PB1D10 SINE Alu 14 116 -4 1 1537 240 35 0 0 chr5 124902060 124902089 -27635170 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1537 1181 68 0 0 chr5 124902089 124902236 -27635023 - B1_Mus2 SINE Alu 0 147 1 1 1537 228 351 0 0 chr5 124902292 124902366 -27634893 + PB1D10 SINE Alu 3 76 -41 1 1537 633 158 202 0 chr5 124902366 124902480 -27634779 + B1_Mus2 SINE Alu 1 137 -10 1 1537 308 300 25 68 chr5 124904338 124904388 -27632871 + B4 SINE B4 43 155 -137 1 1537 363 191 44 0 chr5 124904388 124904456 -27632803 + PB1D9 SINE Alu 1 71 -49 1 1537 282 330 20 10 chr5 124904514 124904615 -27632644 + PB1D10 SINE Alu 3 104 -13 1 1537 25 31 0 0 chr5 124904615 124904647 -27632612 + AT_rich Low_complexity Low_complexity 1 32 0 1 1537 664 158 33 8 chr5 124904649 124904770 -27632489 - B1_Mus1 SINE Alu 0 148 25 1 1537 237 267 44 0 chr5 124904770 124904860 -27632399 - L1MD3 LINE L1 -19 7976 7883 1 1537 3204 63 2 8 chr5 124905282 124905684 -27631575 - MTB LTR MaLR 0 400 1 1 1537 467 278 38 38 chr5 124906099 124906230 -27631029 - B1F1 SINE Alu 0 149 19 1 1537 459 248 7 104 chr5 124906269 124906413 -27630846 - RSINE1 SINE B4 -33 132 3 1 1537 22 0 0 0 chr5 124906438 124906460 -27630799 + AT_rich Low_complexity Low_complexity 1 22 0 1 1537 481 237 26 26 chr5 124906781 124906898 -27630361 + PB1D10 SINE Alu 1 117 0 1 1537 810 263 28 28 chr5 124907311 124907522 -27629737 - B3 SINE B2 -4 212 2 1 1537 1235 78 89 6 chr5 124907524 124907704 -27629555 - B2_Mm2 SINE B2 0 195 1 1 1537 648 229 80 109 chr5 124907728 124907929 -27629330 - B3A SINE B2 -3 195 1 1 1537 726 211 0 64 chr5 124907933 124908090 -27629169 - B1_Mur3 SINE Alu -1 148 2 1 1537 1248 48 0 0 chr5 124908248 124908395 -27628864 + B1_Mus2 SINE Alu 1 147 0 1 1537 1224 199 111 83 chr5 124908454 124908884 -27628375 - RMER13A LTR ERVK 0 860 286 1 1537 361 183 0 66 chr5 124908867 124908943 -27628316 - RMER13A LTR ERVK -789 71 1 1 1537 254 310 0 53 chr5 124908943 124909018 -27628241 + ID4_ SINE ID 13 83 0 1 1537 389 299 86 14 chr5 124909411 124909550 -27627709 + MIRb SINE MIR 52 200 -68 1 1537 385 228 33 1 chr5 124910079 124910170 -27627089 - PB1D7 SINE Alu -25 92 3 1 1537 324 83 0 0 chr5 124910787 124910835 -27626424 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1537 226 229 0 0 chr5 124911494 124911555 -27625704 + A-rich Low_complexity Low_complexity 1 61 0 1 1538 21 0 0 0 chr5 124912282 124912303 -27624956 + AT_rich Low_complexity Low_complexity 1 21 0 1 1538 300 279 0 37 chr5 124912383 124912465 -27624794 + RSINE1 SINE B4 27 105 -60 1 1538 973 66 65 22 chr5 124912832 124912971 -27624288 + B1_Mus1 SINE Alu 4 148 0 1 1538 631 224 16 0 chr5 124912980 124913105 -27624154 + B3 SINE B2 1 127 -89 1 1538 316 296 216 0 chr5 124913889 124914014 -27623245 + RSINE1 SINE B4 2 153 -12 1 1538 585 221 38 8 chr5 124914060 124914192 -27623067 + B1_Mur2 SINE Alu 1 136 -13 1 1538 955 149 0 7 chr5 124914224 124914373 -27622886 - B1_Mus1 SINE Alu 0 148 1 1 1538 252 229 93 0 chr5 124914373 124914404 -27622855 - ORR1B1-int LTR MaLR -863 646 605 1 1538 1132 69 0 20 chr5 124914419 124914566 -27622693 - B1_Mus2 SINE Alu 0 147 4 1 1538 241 299 119 8 chr5 124914592 124914710 -27622549 - MIR SINE MIR -14 248 118 1 1538 890 147 7 27 chr5 124914914 124915061 -27622198 + B1_Mus1 SINE Alu 5 148 0 1 1538 331 173 0 17 chr5 124915525 124915589 -27621670 + B1F2 SINE Alu 1 59 -91 1 1538 274 191 26 117 chr5 124915589 124915601 -27621658 + B4 SINE B4 86 154 -138 1 1538 1220 68 0 0 chr5 124915629 124915776 -27621483 - B1_Mm SINE Alu 0 147 1 1 1538 277 87 43 0 chr5 124915871 124915917 -27621342 + B1_Mur4 SINE Alu 98 145 -5 1 1538 681 209 14 0 chr5 124915940 124916088 -27621171 + Lx9 LINE L1 7327 7476 -168 1 1538 270 0 0 0 chr5 124916088 124916118 -27621141 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1538 1012 128 0 0 chr5 124916226 124916367 -27620892 + B1_Mus2 SINE Alu 5 145 -2 1 1538 287 215 196 41 chr5 124916390 124916487 -27620772 + PB1D9 SINE Alu 9 120 0 1 1538 778 220 130 57 chr5 124916433 124916491 -27620768 + MTC LTR MaLR 21 76 -331 1 1538 1171 94 88 0 chr5 124916491 124916661 -27620598 + B2_Mm1t SINE B2 2 186 -7 1 1538 919 140 147 12 chr5 124916661 124916848 -27620411 + MTC LTR MaLR 77 299 -122 1 1538 2890 121 88 33 chr5 124916852 124917366 -27619893 + RMER15 LTR ERVL 34 575 0 1 1538 473 271 8 8 chr5 124917366 124917485 -27619774 + MTC LTR MaLR 300 418 -3 1 1538 1218 56 0 0 chr5 124917489 124917633 -27619626 + B1_Mus1 SINE Alu 5 148 0 1 1538 249 198 16 0 chr5 124917680 124917733 -27619526 - B3A SINE B2 -137 58 2 1 1538 637 313 42 122 chr5 124917747 124918099 -27619160 - Tigger7 DNA MER2_type -2063 428 98 1 1538 715 163 43 43 chr5 124918099 124918240 -27619019 - B1_Mus2 SINE Alu -6 141 1 1 1538 637 313 42 122 chr5 124918240 124918313 -27618946 - Tigger7 DNA MER2_type -2394 97 37 1 1538 289 316 0 12 chr5 124918747 124918827 -27618432 + ID4 SINE ID 5 83 0 1 1538 448 261 0 35 chr5 124918859 124918974 -27618285 - PB1D9 SINE Alu -8 112 2 1 1538 1170 61 0 45 chr5 124918989 124919144 -27618115 - B1_Mus1 SINE Alu 0 148 1 1 1538 312 252 73 0 chr5 124919149 124919246 -27618013 - PB1D10 SINE Alu -3 117 5 1 1538 219 306 0 16 chr5 124919281 124919344 -27617915 - ID_B1 SINE B4 -76 148 87 1 1538 738 189 8 8 chr5 124919380 124919513 -27617746 - B1_Mur4 SINE Alu -13 137 5 1 1538 216 339 98 33 chr5 124919516 124919638 -27617621 + L2b LINE L2 3226 3355 -20 1 1538 191 214 48 0 chr5 124919608 124919650 -27617609 + MIRm SINE MIR 229 272 -4 1 1538 1020 251 0 14 chr5 124920009 124920227 -27617032 + B3 SINE B2 2 216 0 1 1538 1416 67 11 6 chr5 124920234 124920415 -27616844 + B2_Mm2 SINE B2 2 183 -12 1 1538 1242 48 0 0 chr5 124920444 124920590 -27616669 + B1_Mm SINE Alu 1 146 -1 1 1538 225 83 0 0 chr5 124920591 124920627 -27616632 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1538 656 239 15 7 chr5 124921092 124921227 -27616032 + B1_Mur3 SINE Alu 2 137 -12 1 1538 909 93 0 0 chr5 124921227 124921356 -27615903 + (GAAA)n Simple_repeat Simple_repeat 1 129 0 1 1538 1300 107 6 17 chr5 124921452 124921633 -27615626 + B2_Mm1t SINE B2 1 179 -14 1 1538 1172 51 0 0 chr5 124921634 124921771 -27615488 + B1_Mm SINE Alu 2 138 -9 1 1538 413 64 0 39 chr5 124921816 124921924 -27615335 + B2_Mm2 SINE B2 47 186 -9 1 1538 937 148 14 0 chr5 124921952 124922094 -27615165 - B1_Mus2 SINE Alu -2 145 2 1 1538 284 304 54 0 chr5 124922131 124922243 -27615016 - PB1D9 SINE Alu 0 120 3 1 1538 578 309 20 0 chr5 124923152 124923301 -27613958 + ID_B1 SINE B4 73 224 0 1 1538 309 51 0 0 chr5 124923474 124923513 -27613746 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1 1538 216 284 87 78 chr5 124923518 124923551 -27613708 + B3 SINE B2 5 35 -181 1 1538 2107 106 18 33 chr5 124923551 124923883 -27613376 + ORR1A4 LTR MaLR 3 329 0 1 1538 308 274 22 87 chr5 124923883 124923941 -27613318 + RSINE1 SINE B4 38 91 -74 1 1538 216 284 87 78 chr5 124923941 124923952 -27613307 + B3 SINE B2 36 108 -108 1 1538 241 230 108 0 chr5 124924059 124924133 -27613126 + ID2 SINE ID 2 83 0 1 1538 988 115 7 20 chr5 124924170 124924321 -27612938 + B1_Mur4 SINE Alu 1 149 -1 1 1538 737 202 184 0 chr5 124924388 124924556 -27612703 + B3 SINE B2 5 203 -13 1 1538 1464 63 10 10 chr5 124924583 124924776 -27612483 - B2_Mm1t SINE B2 0 193 1 1 1538 543 171 127 17 chr5 124924796 124924911 -27612348 + B1_Mur1 SINE Alu 21 147 -2 1 1538 1139 67 0 0 chr5 124924998 124925133 -27612126 + B1_Mus1 SINE Alu 2 136 -12 1 1538 387 0 0 0 chr5 124925135 124925178 -27612081 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1 1538 512 228 26 0 chr5 124925247 124925361 -27611898 - PB1D10 SINE Alu 0 117 1 1 1538 451 312 0 18 chr5 124925694 124925808 -27611451 + PB1D7 SINE Alu 9 120 0 1 1538 531 108 0 0 chr5 124925825 124925918 -27611341 + (GA)n Simple_repeat Simple_repeat 1 93 0 1 1538 189 0 0 0 chr5 124926014 124926035 -27611224 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1538 631 250 0 0 chr5 124926073 124926201 -27611058 + B1_Mur1 SINE Alu 1 128 -21 1 1538 934 137 18 0 chr5 124926201 124926369 -27610890 + GA-rich Low_complexity Low_complexity 4 174 0 1 1538 423 0 0 0 chr5 124926517 124926564 -27610695 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1538 324 0 0 0 chr5 124926849 124926885 -27610374 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1538 188 56 0 77 chr5 124926885 124926923 -27610336 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1538 30 0 0 0 chr5 124926935 124926965 -27610294 + AT_rich Low_complexity Low_complexity 1 30 0 1 1538 957 161 7 0 chr5 124926975 124927124 -27610135 + B1_Mur4 SINE Alu 1 150 0 1 1538 711 0 0 0 chr5 124927135 124927214 -27610045 + (GAGAA)n Simple_repeat Simple_repeat 2 80 0 1 1538 633 223 52 68 chr5 124927227 124927419 -27609840 + B3 SINE B2 1 189 -27 1 1538 1374 95 21 0 chr5 124927474 124927664 -27609595 + B2_Mm2 SINE B2 1 194 -1 1 1538 219 225 0 0 chr5 124927704 124927744 -27609515 + L2b LINE L2 3319 3358 -17 1 1538 342 0 0 0 chr5 124928498 124928536 -27608723 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1538 232 339 31 55 chr5 124929018 124929042 -27608217 + ID_B1 SINE B4 63 187 -37 1 1538 490 196 48 19 chr5 124929042 124929146 -27608113 + B1_Mur4 SINE Alu 4 110 -40 1 1538 336 175 0 0 chr5 124929150 124929213 -27608046 + GA-rich Low_complexity Low_complexity 3 65 0 1 1538 1085 89 7 0 chr5 124929244 124929390 -27607869 + B1_Mus1 SINE Alu 2 148 0 1 1538 1213 50 0 0 chr5 124929394 124929533 -27607726 + B1_Mus2 SINE Alu 1 139 -8 1 1538 195 69 0 0 chr5 124929544 124929573 -27607686 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1538 180 0 0 0 chr5 124929774 124929794 -27607465 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 1 1538 473 198 85 0 chr5 124929795 124929901 -27607358 - B1_Mur4 SINE Alu -1 149 35 1 1538 805 136 16 0 chr5 124929908 124930033 -27607226 - B1_Mus1 SINE Alu -20 128 2 1 1538 1280 91 17 0 chr5 124930839 124931014 -27606245 + B2_Mm1t SINE B2 2 179 -14 1 1538 282 57 0 0 chr5 124931112 124931147 -27606112 + ID_B1 SINE B4 181 215 -9 1 1538 1058 132 66 36 chr5 124931194 124931390 -27605869 - RLTR15 LTR ERVK 0 359 158 1 1538 1043 76 14 7 chr5 124931405 124931550 -27605709 - B1_Mus1 SINE Alu 0 148 3 1 1538 1013 140 28 23 chr5 124931553 124931729 -27605530 - RLTR15 LTR ERVK -182 177 1 1 1538 357 151 0 0 chr5 124931735 124931788 -27605471 + B3A SINE B2 30 82 -116 1 1538 237 82 61 0 chr5 124932184 124932233 -27605026 + (TTTCC)n Simple_repeat Simple_repeat 4 55 0 1 1538 1187 61 0 0 chr5 124932240 124932387 -27604872 - B1_Mm SINE Alu 0 147 1 1 1538 838 128 58 36 chr5 124932394 124932532 -27604727 - B1_Mus1 SINE Alu -7 141 1 1 1538 776 212 98 5 chr5 124932534 124932728 -27604531 - B3 SINE B2 0 216 5 1 1538 382 220 109 10 chr5 124932728 124932829 -27604430 - PB1D10 SINE Alu -2 115 5 1 1538 225 260 0 52 chr5 124933384 124933461 -27603798 + G-rich Low_complexity Low_complexity 6 78 0 1 1538 228 67 0 0 chr5 124933674 124933704 -27603555 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1538 737 170 65 22 chr5 124933882 124934020 -27603239 + B1_Mus1 SINE Alu 4 147 -1 1 1538 1055 140 0 13 chr5 124934078 124934237 -27603022 + B2_Mm2 SINE B2 1 157 -38 1 1538 356 355 53 27 chr5 124934441 124934744 -27602515 + RLTR6-int LTR ERV1 4028 4518 -3260 1 1538 428 279 90 59 chr5 124935185 124935511 -27601748 + RLTR6-int LTR ERV1 4934 5267 -2511 1 1538 1587 38 11 0 chr5 124936660 124936845 -27600414 - B2_Mm1a SINE B2 -6 187 1 1 1538 1177 42 28 0 chr5 124937055 124937198 -27600061 - B1_Mm SINE Alu 0 147 1 1 1538 4220 88 10 12 chr5 124937211 124937796 -27599463 + MT2B2 LTR ERVL 1 584 0 1 1538 225 0 0 0 chr5 124937955 124937980 -27599279 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1538 1200 76 0 0 chr5 124937980 124938125 -27599134 - B1_Mm SINE Alu 0 147 3 1 1538 294 345 5 73 chr5 124938170 124938242 -27599017 + RLTR6-int LTR ERV1 7116 7180 -426 1 1538 1415 94 11 0 chr5 124938242 124938433 -27598826 + B2_Mm1t SINE B2 1 193 0 1 1538 345 300 9 2 chr5 124938433 124938551 -27598708 + RLTR6-int LTR ERV1 7170 7293 -313 1 1538 882 247 16 0 chr5 124939376 124939558 -27597701 - B3 SINE B2 -31 185 1 1 1538 416 276 0 0 chr5 124939582 124939669 -27597590 - PB1D7 SINE Alu -31 89 3 1 1538 322 166 144 0 chr5 124939958 124940038 -27597221 + PB1D10 SINE Alu 10 103 -46 1 1538 273 239 44 15 chr5 124940909 124940977 -27596282 - ID4 SINE ID -3 80 11 1 1538 245 200 20 0 chr5 124941043 124941093 -27596166 + ID_B1 SINE B4 97 147 -77 1 1538 528 208 59 0 chr5 124941192 124941293 -27595966 + PB1D10 SINE Alu 1 107 -10 1 1538 306 229 54 115 chr5 124941564 124941614 -27595645 + RLTR25B LTR ERVK 402 521 -507 1 1538 641 109 22 0 chr5 124941614 124941706 -27595553 + B1_Mur1 SINE Alu 45 138 -11 1 1538 307 250 0 38 chr5 124941879 124941958 -27595301 + B1_Mur3 SINE Alu 2 77 -72 1 1538 731 208 96 21 chr5 124942031 124942218 -27595041 + B3 SINE B2 2 202 -14 1 1538 396 292 38 0 chr5 124942371 124942477 -27594782 + PB1D10 SINE Alu 1 110 -7 1 1538 1200 62 7 0 chr5 124942486 124942632 -27594627 + B1_Mm SINE Alu 1 147 0 1 1538 522 297 9 90 chr5 124944227 124944460 -27592799 - ID_B1 SINE B4 -8 216 3 1 1538 551 251 0 84 chr5 124944573 124944751 -27592508 - RSINE1 SINE B4 0 165 3 1 1538 242 271 0 0 chr5 124944757 124944805 -27592454 - ID4 SINE ID -34 49 2 1 1538 214 344 7 174 chr5 124944826 124944910 -27592349 - RSINE1 SINE B4 -35 130 66 1 1538 1103 74 0 7 chr5 124944910 124945059 -27592200 - B1_Mus1 SINE Alu 0 148 1 1 1538 214 344 7 174 chr5 124945059 124945129 -27592130 - RSINE1 SINE B4 -100 65 2 1 1538 269 237 0 17 chr5 124945151 124945211 -27592048 - PB1D10 SINE Alu -15 102 44 1 1538 422 282 27 47 chr5 124945295 124945444 -27591815 - B4A SINE B4 -146 146 1 1 1538 306 247 42 96 chr5 124946452 124946618 -27590641 + MLT1C LTR MaLR 122 278 -189 1 1538 376 135 281 0 chr5 124946719 124946815 -27590444 - B1_Mur4 SINE Alu -7 143 21 1 1538 233 253 146 37 chr5 124946848 124946930 -27590329 - PB1D10 SINE Alu -23 94 4 1 1538 299 246 0 40 chr5 124946860 124946936 -27590323 - ID_B1 SINE B4 -73 151 79 1 1538 960 148 199 0 chr5 124947456 124947632 -27589627 - B3 SINE B2 -5 211 1 1 1538 230 56 0 27 chr5 124947890 124947927 -27589332 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1538 275 335 38 13 chr5 124948737 124948894 -27588365 + MIRb SINE MIR 19 177 -91 1 1538 220 250 52 141 chr5 124949469 124949604 -27587655 - RSINE1 SINE B4 0 165 43 1 1538 1360 65 43 0 chr5 124949821 124950005 -27587254 + B2_Mm1a SINE B2 2 193 0 1 1538 389 263 42 10 chr5 124950008 124950104 -27587155 - PB1D7 SINE Alu -13 107 9 1 1538 1381 72 0 25 chr5 124950313 124950512 -27586747 - B2_Mm2 SINE B2 0 195 2 1 1538 489 232 104 0 chr5 124951352 124951477 -27585782 - ID_B1 SINE B4 -5 219 82 1 1538 24 0 0 0 chr5 124951962 124951986 -27585273 + AT_rich Low_complexity Low_complexity 1 24 0 1 1538 236 185 0 18 chr5 124952166 124952221 -27585038 + CT-rich Low_complexity Low_complexity 2 55 0 1 1538 201 314 29 0 chr5 124952229 124952299 -27584960 + (CATG)n Simple_repeat Simple_repeat 3 74 0 1 1538 499 170 123 0 chr5 124952590 124952696 -27584563 - URR1B DNA MER1_type -5 220 102 1 1538 186 43 0 0 chr5 124952769 124952792 -27584467 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1538 576 191 19 0 chr5 124952792 124952897 -27584362 - B1_Mur3 SINE Alu -9 140 34 1 1538 676 290 38 11 chr5 124952910 124952928 -27584331 - B3A SINE B2 -8 190 174 1 1538 480 35 0 0 chr5 124952928 124952986 -27584273 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1538 676 290 38 11 chr5 124952986 124953152 -27584107 - B3A SINE B2 -25 173 1 1 1538 324 311 111 32 chr5 124953154 124953343 -27583916 - B4A SINE B4 -86 206 3 1 1538 441 280 16 23 chr5 124954408 124954536 -27582723 + B1F SINE Alu 1 127 -22 1 1538 256 200 73 0 chr5 124954540 124954595 -27582664 + B1F SINE Alu 75 133 -16 1 1538 1138 48 0 27 chr5 124954663 124954813 -27582446 + B1_Mus2 SINE Alu 2 147 0 1 1538 259 292 73 102 chr5 124955215 124955421 -27581838 - L1M4 LINE L1 -502 5672 5473 1 1538 617 229 26 7 chr5 124955429 124955583 -27581676 - RSINE1 SINE B4 -4 161 5 1 1538 2015 159 55 8 chr5 124955583 124955645 -27581614 + MTC LTR MaLR 22 83 -338 1 1538 818 167 9 135 chr5 124955645 124955685 -27581574 + B2_Mm2 SINE B2 2 40 -155 1 1538 1405 49 49 0 chr5 124955685 124955868 -27581391 + B2_Mm1t SINE B2 2 193 0 1 1538 818 167 9 135 chr5 124955868 124956042 -27581217 + B2_Mm2 SINE B2 41 189 -6 1 1538 2015 159 55 8 chr5 124956042 124956360 -27580899 + MTC LTR MaLR 84 419 -2 1 1538 448 235 8 17 chr5 124956375 124956492 -27580767 - PB1D7 SINE Alu -1 119 4 1 1538 477 252 18 9 chr5 124956688 124956800 -27580459 + URR1B DNA MER1_type 2 114 -111 1 1538 325 271 0 0 chr5 124957689 124957759 -27579500 - PB1D10 SINE Alu -43 74 5 1 1538 723 163 82 24 chr5 124957859 124958029 -27579230 + B2_Mm2 SINE B2 1 180 -15 1 1538 230 182 69 83 chr5 124958601 124958673 -27578586 - B1_Mm SINE Alu -18 129 59 1 1538 350 296 95 8 chr5 124958618 124958744 -27578515 - ID_B1 SINE B4 -2 222 86 1 1538 210 71 0 0 chr5 124958796 124958824 -27578435 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 1 1538 1240 44 0 0 chr5 124958826 124958984 -27578275 - B2_Mm2 SINE B2 -37 158 1 1 1538 276 152 0 21 chr5 124959182 124959229 -27578030 + B1F SINE Alu 96 141 -8 1 1538 323 285 20 171 chr5 124959239 124959317 -27577942 + ID SINE ID 1 51 -173 1 1538 381 75 0 0 chr5 124959317 124959370 -27577889 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1538 323 285 20 171 chr5 124959370 124959490 -27577769 + ID_B1 SINE B4 52 169 -55 1 1538 321 233 65 22 chr5 124959413 124959505 -27577754 + PB1D7 SINE Alu 14 109 -11 1 1538 616 199 6 151 chr5 124959609 124959775 -27577484 + B1_Mur2 SINE Alu 1 142 -7 1 1538 207 0 0 0 chr5 124960076 124960099 -27577160 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1538 536 257 122 78 chr5 124960346 124960616 -27576643 - B4A SINE B4 -9 283 2 1 1538 371 294 49 18 chr5 124961356 124961519 -27575740 + MLT1K LTR MaLR 365 532 -63 1 1538 332 138 0 15 chr5 124961528 124961594 -27575665 + CT-rich Low_complexity Low_complexity 2 66 0 1 1538 237 65 0 0 chr5 124962339 124962370 -27574889 + (CCCCCA)n Simple_repeat Simple_repeat 5 35 0 1 1538 343 210 58 39 chr5 124962683 124962787 -27574472 + RSINE1 SINE B4 58 163 -2 1 1538 968 301 85 22 chr5 124962804 124963265 -27573994 - L1MB7 LINE L1 -19 6165 5676 1 1538 581 252 52 0 chr5 124963276 124963411 -27573848 - ID_B1 SINE B4 -1 223 82 1 1538 720 213 42 33 chr5 124963419 124963633 -27573626 - B3 SINE B2 0 216 1 1 1538 267 103 0 0 chr5 124963813 124963852 -27573407 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1 1538 211 243 14 14 chr5 124963884 124963955 -27573304 + MIR SINE MIR 44 114 -94 1 1538 2161 122 87 31 chr5 124964047 124964460 -27572799 - RMER4A LTR ERVK -8 458 23 1 1538 351 0 0 0 chr5 124964880 124964919 -27572340 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1 1538 1034 51 7 0 chr5 124964919 124965057 -27572202 - B1_Mus2 SINE Alu -3 144 6 1 1538 1323 60 22 16 chr5 124965059 124965244 -27572015 - B2_Mm2 SINE B2 -8 187 2 1 1538 831 210 93 0 chr5 124965275 124965437 -27571822 - B3 SINE B2 -38 178 2 1 1538 527 211 117 0 chr5 124966386 124966514 -27570745 + B1_Mur1 SINE Alu 1 143 -6 1 1538 576 231 39 0 chr5 124966529 124966659 -27570600 + B1_Mur1 SINE Alu 1 135 -14 1 1538 315 268 0 76 chr5 124966964 124967069 -27570190 + ID_B1 SINE B4 80 176 -48 1 1538 462 216 0 0 chr5 124966980 124967077 -27570182 + PB1D7 SINE Alu 10 106 -14 1 1538 427 338 43 71 chr5 124967131 124967386 -27569873 + B4 SINE B4 41 288 -4 1 1538 770 163 51 25 chr5 124967413 124967570 -27569689 - B3 SINE B2 -7 209 49 1 1538 753 208 25 85 chr5 124967912 124968081 -27569178 + B3 SINE B2 2 168 -48 1 1538 276 120 0 0 chr5 124968081 124968131 -27569128 + (CAGA)n Simple_repeat Simple_repeat 1 50 0 1 1538 753 208 25 85 chr5 124968131 124968161 -27569098 + B3 SINE B2 169 189 -27 1 1538 700 235 7 0 chr5 124968396 124968545 -27568714 - B1_Mur4 SINE Alu 0 150 1 1 1538 267 313 128 24 chr5 124969174 124969423 -27567836 + L1M4 LINE L1 5619 5893 -291 1 1538 180 0 0 0 chr5 124969653 124969673 -27567586 + (CGTG)n Simple_repeat Simple_repeat 3 22 0 1 1538 559 253 146 56 chr5 124969673 124969697 -27567562 - B4A SINE B4 0 292 269 1 1538 525 312 12 6 chr5 124969697 124969858 -27567401 - RSINE1 SINE B4 0 165 4 1 1538 609 253 146 56 chr5 124969858 124969895 -27567364 - ID_B1 SINE B4 -24 268 186 1 1538 665 181 71 0 chr5 124969895 124970022 -27567237 - B1_Mm SINE Alu -5 142 7 1 1538 609 253 146 56 chr5 124970022 124970101 -27567158 - ID_B1 SINE B4 -24 185 1 1 1538 777 136 75 8 chr5 124970217 124970350 -27566909 + B1_Mur1 SINE Alu 1 142 -7 1 1538 369 0 0 0 chr5 124970351 124970392 -27566867 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 1 1538 483 88 0 0 chr5 124971842 124971925 -27565334 + L1_Mus2 LINE L1 6493 6578 -4 1 1538 210 37 0 0 chr5 124972040 124972067 -27565192 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1538 402 74 0 0 chr5 124972190 124972244 -27565015 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1538 668 211 0 52 chr5 124972268 124972403 -27564856 + B1_Mur1 SINE Alu 22 149 0 1 1538 1413 52 0 58 chr5 124972413 124972618 -27564641 + B2_Mm2 SINE B2 2 194 -1 1 1538 610 273 87 10 chr5 124973174 124973370 -27563889 - B3 SINE B2 -5 211 1 1 1538 1150 35 21 0 chr5 124973419 124973562 -27563697 + B1_Mm SINE Alu 2 147 0 1 1538 229 242 66 9 chr5 124973585 124973604 -27563655 + B1_Mm SINE Alu 1 36 -111 1 1538 229 186 0 0 chr5 124973604 124973647 -27563612 + ID_B1 SINE B4 98 140 -84 1 1538 229 242 66 9 chr5 124973647 124973673 -27563586 + B1_Mm SINE Alu 37 90 -57 1 1538 321 222 0 27 chr5 124973835 124973909 -27563350 + PB1D7 SINE Alu 20 91 -29 1 1538 1049 111 12 0 chr5 124973977 124974139 -27563120 + B2_Mm1t SINE B2 2 165 -28 1 1538 735 12 0 0 chr5 124974140 124974224 -27563035 + (GGGAA)n Simple_repeat Simple_repeat 1 84 0 1 1538 439 272 126 24 chr5 124974314 124974521 -27562738 + L1MB8 LINE L1 5871 6098 -80 1 1538 389 244 0 0 chr5 124974629 124974711 -27562548 - ID4_ SINE ID -1 82 1 1 1538 675 126 0 0 chr5 124974711 124974814 -27562445 - ZP3AR Satellite Satellite -64 148 46 1 1538 420 231 23 86 chr5 124974819 124974947 -27562312 - PB1 SINE Alu -5 122 3 1 1538 217 354 142 0 chr5 124974975 124975102 -27562157 + MIRb SINE MIR 93 237 -31 1 1538 594 256 107 40 chr5 124975610 124975834 -27561425 + MLT1D LTR MaLR 148 386 -119 1 1538 1027 62 0 58 chr5 124975897 124976052 -27561207 - B1_Mm SINE Alu 0 147 2 1 1538 367 247 0 0 chr5 124976060 124976141 -27561118 - PB1D10 SINE Alu -3 114 34 1 1538 812 218 20 5 chr5 124976392 124976590 -27560669 - ID_B1 SINE B4 -21 203 3 1 1538 180 240 175 40 chr5 124976680 124976806 -27560453 + L2c LINE L2 3095 3237 -150 1 1538 28 29 0 0 chr5 124976980 124977015 -27560244 + AT_rich Low_complexity Low_complexity 1 35 0 1 1538 485 0 33 0 chr5 124977016 124977076 -27560183 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 1 1538 728 194 15 7 chr5 124977079 124977214 -27560045 - B1_Mur4 SINE Alu -14 136 1 1 1538 820 215 35 20 chr5 124977210 124977409 -27559850 + ID_B1 SINE B4 3 204 -20 1 1538 597 203 68 0 chr5 124977439 124977572 -27559687 + B1_Mus2 SINE Alu 6 147 0 1 1538 489 219 202 53 chr5 124977590 124977778 -27559481 + B3 SINE B2 1 216 0 1 1538 1092 76 0 7 chr5 124977918 124978064 -27559195 + B1_Mus2 SINE Alu 1 145 -2 1 1538 200 233 0 0 chr5 124978066 124978109 -27559150 + A-rich Low_complexity Low_complexity 1 43 0 1 1538 230 231 0 19 chr5 124979242 124979295 -27557964 - RSINE1 SINE B4 -112 53 2 1 1538 225 314 76 8 chr5 124979372 124979491 -27557768 - MIR SINE MIR -108 154 28 1 1538 243 288 17 59 chr5 124979780 124979898 -27557361 - MIRc SINE MIR -143 125 13 1 1538 323 302 30 66 chr5 124980385 124980579 -27556680 - MIRc SINE MIR -63 205 20 1 1538 595 155 22 10 chr5 124982160 124982285 -27554974 - B1_Mur1 SINE Alu 0 149 12 1 1538 274 285 15 0 chr5 124982384 124982514 -27554745 + Tigger7 DNA MER2_type 2271 2402 -89 1 1538 341 160 9 12 chr5 124982956 124983051 -27554208 - B2_Mm2 SINE B2 -19 176 47 1 1538 1248 96 23 0 chr5 124983097 124983274 -27553985 - B2_Mm2 SINE B2 -14 181 1 1 1538 324 229 0 0 chr5 124983624 124983694 -27553565 + B1F1 SINE Alu 1 70 -79 1 1538 423 287 96 0 chr5 124983768 124983904 -27553355 + RSINE1 SINE B4 17 165 0 1 1538 312 27 0 0 chr5 124983909 124983946 -27553313 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1538 192 97 0 0 chr5 124983946 124983977 -27553282 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1538 519 207 0 65 chr5 124983993 124984117 -27553142 + B1_Mur1 SINE Alu 34 149 0 1 1538 853 241 15 15 chr5 124984149 124984355 -27552904 + B3 SINE B2 5 210 -6 1 1538 1192 54 0 0 chr5 124984365 124984512 -27552747 - B1_Mm SINE Alu 0 147 1 1 1538 606 300 16 0 chr5 124984593 124984783 -27552476 - B3A SINE B2 -4 194 2 1 1538 317 299 17 0 chr5 124984790 124984907 -27552352 - PB1D7 SINE Alu -1 119 1 1 1538 285 259 77 66 chr5 124985280 124985371 -27551888 + PB1D10 SINE Alu 23 114 -3 1 1538 437 189 205 0 chr5 124985374 124985496 -27551763 + B1_Mus1 SINE Alu 2 148 0 1 1538 345 100 0 0 chr5 124985589 124985639 -27551620 + (GGGAA)n Simple_repeat Simple_repeat 4 53 0 1 1538 423 0 0 0 chr5 124985745 124985792 -27551467 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1538 450 0 0 0 chr5 124985850 124985900 -27551359 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1538 243 0 0 0 chr5 124985900 124985926 -27551333 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1538 738 206 0 0 chr5 124985934 124986065 -27551194 + B1_Mur1 SINE Alu 11 141 -8 1 1538 323 314 50 8 chr5 124986082 124986201 -27551058 + RSINE1 SINE B4 9 132 -33 1 1538 2698 38 0 0 chr5 124986210 124986550 -27550709 - ORR1A1 LTR MaLR -1 345 6 1 1538 219 69 0 0 chr5 124986762 124986791 -27550468 + (CCCCCA)n Simple_repeat Simple_repeat 3 31 0 1 1538 361 267 0 25 chr5 124987149 124987268 -27549991 + CT-rich Low_complexity Low_complexity 1 116 0 1 1538 1168 54 0 0 chr5 124987463 124987610 -27549649 - B1_Mus1 SINE Alu -1 147 1 1 1538 353 321 79 2 chr5 124987790 124987979 -27549280 + L1ME2z LINE L1 5701 5900 -264 1 1538 733 228 7 0 chr5 124987981 124988117 -27549142 + B1_Mur1 SINE Alu 2 138 -11 1 1538 198 0 0 0 chr5 124988117 124988139 -27549120 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 1 1538 1510 36 0 20 chr5 124988168 124988364 -27548895 + B2_Mm2 SINE B2 1 192 -3 1 1538 395 305 0 0 chr5 124988368 124988450 -27548809 + B1F SINE Alu 9 90 -59 1 1538 1101 64 0 7 chr5 124988612 124988754 -27548505 - B1_Mus2 SINE Alu -6 141 1 1 1538 315 309 44 57 chr5 124988993 124989151 -27548108 - MIRc SINE MIR -85 183 28 1 1538 387 0 0 0 chr5 124989476 124989519 -27547740 + (TATTG)n Simple_repeat Simple_repeat 2 44 0 1 1538 437 154 181 53 chr5 124989519 124989630 -27547629 - B1_Mm SINE Alu -9 140 15 1 1538 1508 47 0 5 chr5 124989630 124989824 -27547435 + B2_Mm1a SINE B2 1 193 0 1 1538 352 193 154 125 chr5 124989824 124989848 -27547411 - B1F2 SINE Alu -135 14 1 1 1538 453 36 0 0 chr5 124989888 124989943 -27547316 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 1 1538 239 207 16 65 chr5 124989955 124990017 -27547242 - B1_Mur4 SINE Alu -26 124 66 1 1538 22 35 0 0 chr5 124990029 124990058 -27547201 + AT_rich Low_complexity Low_complexity 1 29 0 1 1538 629 241 51 22 chr5 124990369 124990547 -27546712 - B3 SINE B2 0 216 34 1 1538 246 228 12 12 chr5 124990759 124990839 -27546420 + (CGG)n Simple_repeat Simple_repeat 2 81 0 1 1538 22 56 0 0 chr5 124991052 124991088 -27546171 + GC_rich Low_complexity Low_complexity 1 36 0 1 1538 189 0 0 0 chr5 124991748 124991769 -27545490 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1538 252 182 0 0 chr5 124991954 124991998 -27545261 + B3A SINE B2 2 45 -153 1 1538 298 263 82 31 chr5 124992528 124992626 -27544633 + PB1D9 SINE Alu 17 119 -1 1 1538 296 274 0 0 chr5 124994028 124994101 -27543158 - tRNA-Ala-GCY_ tRNA tRNA -2 73 1 1 1538 339 250 124 10 chr5 124994125 124994222 -27543037 - PB1 SINE Alu -6 121 14 1 1538 318 250 25 12 chr5 124995050 124995131 -27542128 - PB1D9 SINE Alu -16 104 23 1 1538 321 159 16 0 chr5 124995151 124995214 -27542045 + B1_Mur3 SINE Alu 85 148 -1 1 1538 348 200 98 24 chr5 124995294 124995376 -27541883 + RSINE1 SINE B4 39 126 -39 1 1538 22 35 0 0 chr5 124995584 124995613 -27541646 + AT_rich Low_complexity Low_complexity 1 29 0 1 1538 1136 68 0 0 chr5 124995613 124995759 -27541500 + B1_Mus2 SINE Alu 2 147 0 1 1538 993 85 95 18 chr5 124995766 124995934 -27541325 - B2_Mm2 SINE B2 -14 181 1 1 1538 424 186 28 38 chr5 124996080 124996186 -27541073 + PB1D9 SINE Alu 14 118 -2 1 1538 259 291 121 38 chr5 124996194 124996326 -27540933 - ID_B1 SINE B4 -79 145 3 1 1538 426 132 39 72 chr5 124996495 124996611 -27540648 + PB1D9 SINE Alu 12 123 -24 1 1538 366 292 106 0 chr5 124996595 124996708 -27540551 + ID_B1 SINE B4 80 204 -20 1 1538 1079 122 26 21 chr5 124997198 124997229 -27540030 - B2_Mm2 SINE B2 0 195 162 1 1538 1310 91 37 0 chr5 124997229 124997416 -27539843 - B2_Mm2 SINE B2 0 195 2 1 1538 1079 122 26 21 chr5 124997416 124997577 -27539682 - B2_Mm2 SINE B2 -34 161 3 1 1538 777 77 17 17 chr5 124997607 124997726 -27539533 + PB1D9 SINE Alu 2 120 0 1 1538 752 251 59 0 chr5 124997736 124997939 -27539320 - B3 SINE B2 0 216 2 1 1538 23 0 0 0 chr5 124997956 124997979 -27539280 + AT_rich Low_complexity Low_complexity 1 23 0 1 1538 597 298 11 0 chr5 124998444 124998622 -27538637 - B3A SINE B2 -18 180 1 1 1538 716 122 62 35 chr5 124998729 124998873 -27538386 - B1_Mus1 SINE Alu 0 148 1 1 1538 22 0 0 0 chr5 125000260 125000282 -27536977 + AT_rich Low_complexity Low_complexity 1 22 0 1 1538 293 282 42 0 chr5 125000634 125000705 -27536554 + B1_Mus2 SINE Alu 1 74 -73 2 1538 985 157 110 57 chr5 125000698 125001028 -27536231 + RMER4B LTR ERVK 48 369 -97 3 1538 1658 36 0 0 chr5 125001028 125001220 -27536039 - B2_Mm1a SINE B2 0 193 2 4 1538 947 202 142 113 chr5 125001220 125001296 -27535963 + RMER4B LTR ERVK 370 466 0 3 1538 250 89 148 82 chr5 125001296 125001357 -27535902 + B1_Mur2 SINE Alu 84 148 -1 5 1538 1383 74 26 0 chr5 125001364 125001553 -27535706 + B2_Mm2 SINE B2 2 195 0 6 1538 1291 101 21 5 chr5 125001586 125001776 -27535483 + B2_Mm1a SINE B2 1 193 0 7 1538 1244 34 0 0 chr5 125003531 125003677 -27533582 + B1_Mus1 SINE Alu 2 147 -1 8 1538 183 42 0 0 chr5 125003678 125003702 -27533557 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 1538 198 267 78 0 chr5 125003810 125003900 -27533359 - L2b LINE L2 -254 3121 3025 1 1538 720 228 89 45 chr5 125003920 125004122 -27533137 + B3 SINE B2 1 211 -5 1 1538 180 0 0 0 chr5 125004128 125004148 -27533111 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1538 180 189 27 0 chr5 125004186 125004223 -27533036 - MIRc SINE MIR -190 78 41 1 1538 666 174 26 9 chr5 125004266 125004382 -27532877 - PB1D9 SINE Alu -2 118 1 1 1538 423 194 0 0 chr5 125005118 125005190 -27532069 - BC1_Mm scRNA scRNA -80 72 1 1 1538 738 245 80 0 chr5 125005240 125005440 -27531819 + B3 SINE B2 1 216 0 1 1538 252 257 100 0 chr5 125005464 125005475 -27531784 + ID SINE ID 66 83 -141 1 1538 422 219 10 59 chr5 125005475 125005615 -27531644 + B1_Mur3 SINE Alu 2 123 -26 1 1538 1353 219 75 20 chr5 125005615 125005964 -27531295 - ORR1D2 LTR MaLR 0 370 3 1 1538 1236 55 7 0 chr5 125005968 125006114 -27531145 + B1_Mus2 SINE Alu 1 147 0 2 1538 319 263 156 15 chr5 125006138 125006273 -27530986 - MER82 DNA MER2_type -293 360 207 2 1538 23 0 0 0 chr5 125006318 125006341 -27530918 + AT_rich Low_complexity Low_complexity 1 23 0 2 1538 981 152 120 0 chr5 125006341 125006525 -27530734 - B3 SINE B2 0 216 11 2 1538 372 119 0 0 chr5 125007426 125007485 -27529774 + (TCCCC)n Simple_repeat Simple_repeat 4 62 0 2 1538 207 307 0 43 chr5 125007485 125007548 -27529711 + polypyrimidine Low_complexity Low_complexity 30 90 0 2 1538 256 269 50 25 chr5 125007548 125007628 -27529631 - ID4_ SINE ID -1 82 1 2 1538 207 307 0 43 chr5 125007628 125007656 -27529603 + polypyrimidine Low_complexity Low_complexity 3 29 0 2 1538 385 319 25 33 chr5 125008336 125008456 -27528803 - PB1D7 SINE Alu -1 119 1 2 1538 1158 55 7 7 chr5 125008522 125008669 -27528590 - B1_Mus2 SINE Alu 0 147 1 2 1538 433 191 36 62 chr5 125008967 125009079 -27528180 - B1F SINE Alu -1 148 40 3 1538 475 236 92 23 chr5 125009524 125009654 -27527605 + B1_Mur1 SINE Alu 5 143 -6 3 1538 1172 75 0 7 chr5 125009661 125009809 -27527450 - B1_Mus2 SINE Alu 0 147 1 3 1538 325 230 110 0 chr5 125009831 125009931 -27527328 - PB1D10 SINE Alu 0 117 7 3 1538 287 270 154 22 chr5 125010525 125010616 -27526643 + ID_B1 SINE B4 118 220 -4 3 1538 22 0 0 0 chr5 125010702 125010724 -27526535 + GC_rich Low_complexity Low_complexity 1 22 0 3 1538 1827 203 115 14 chr5 125010944 125011595 -27525664 - Lx4B LINE L1 -69 6907 6132 3 1538 885 151 22 13 chr5 125011600 125011778 -27525481 - B3 SINE B2 -9 186 3 3 1538 389 310 26 9 chr5 125012792 125012906 -27524353 - PB1D10 SINE Alu -1 116 1 3 1538 462 256 0 0 chr5 125012817 125012907 -27524352 - ID_B1 SINE B4 -54 170 81 3 1538 252 259 130 57 chr5 125012823 125012946 -27524313 - MT2B LTR ERVL -361 240 109 4 1538 306 276 65 19 chr5 125013023 125013130 -27524129 + PB1D7 SINE Alu 1 112 -8 4 1538 412 156 39 68 chr5 125013275 125013378 -27523881 - B1_Mus2 SINE Alu -2 145 46 4 1538 378 237 67 42 chr5 125015900 125016019 -27521240 - B1_Mur2 SINE Alu -27 122 1 4 1538 529 146 106 26 chr5 125017044 125017157 -27520102 - B1_Mur4 SINE Alu -5 145 24 4 1538 201 74 0 0 chr5 125017317 125017344 -27519915 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1538 1274 124 16 0 chr5 125017418 125017603 -27519656 + B2_Mm2 SINE B2 1 188 -7 4 1538 807 150 23 0 chr5 125017651 125017784 -27519475 - B1_Mur4 SINE Alu -9 141 6 4 1538 385 263 51 136 chr5 125017784 125017827 -27519432 - B4 SINE B4 -75 217 57 4 1538 225 263 0 0 chr5 125018075 125018132 -27519127 + GA-rich Low_complexity Low_complexity 1 57 0 4 1538 1125 83 0 7 chr5 125018184 125018330 -27518929 + B1_Mus2 SINE Alu 2 146 -1 5 1538 192 154 0 25 chr5 125019031 125019071 -27518188 - L4 LINE RTE -998 1031 993 5 1538 1342 175 137 14 chr5 125019218 125019496 -27517763 + ORR1B1 LTR MaLR 41 352 -42 5 1538 1160 75 7 0 chr5 125019496 125019642 -27517617 + B1_Mus1 SINE Alu 2 148 0 5 1538 933 126 7 21 chr5 125020211 125020363 -27516896 + B1_Mur4 SINE Alu 1 150 0 5 1538 406 89 0 0 chr5 125020365 125020421 -27516838 + ORR1B1 LTR MaLR 339 394 0 5 1538 361 193 86 0 chr5 125020421 125020498 -27516761 - B1F1 SINE Alu -54 95 13 5 1538 239 238 144 65 chr5 125021494 125021633 -27515626 - MIR3 SINE MIR -26 182 33 5 1538 745 235 73 20 chr5 125021996 125022200 -27515059 - ID_B1 SINE B4 -7 217 3 5 1538 250 300 106 7 chr5 125022327 125022478 -27514781 + L1M3 LINE L1 5678 5843 -337 5 1538 413 220 78 20 chr5 125022840 125022942 -27514317 + PB1D9 SINE Alu 3 110 -10 6 1538 245 191 79 0 chr5 125023187 125023250 -27514009 - B1_Mus2 SINE Alu -67 80 13 6 1538 275 217 183 11 chr5 125023470 125023563 -27513696 + PB1D10 SINE Alu 1 109 -8 6 1538 556 157 113 0 chr5 125023924 125024039 -27513220 - B3 SINE B2 -1 215 88 6 1538 713 256 77 0 chr5 125024045 125024240 -27513019 + B3 SINE B2 1 210 -6 6 1538 524 252 121 13 chr5 125026042 125026191 -27511068 + RSINE1 SINE B4 1 165 0 6 1538 1189 75 0 0 chr5 125026247 125026393 -27510866 + B1_Mus2 SINE Alu 2 147 0 6 1538 207 125 0 0 chr5 125026395 125026435 -27510824 + (A)n Simple_repeat Simple_repeat 1 40 0 6 1538 317 250 28 0 chr5 125026446 125026518 -27510741 + ID4_ SINE ID 9 82 -1 6 1538 258 228 151 24 chr5 125026662 125026788 -27510471 - MIRb SINE MIR -115 153 12 6 1538 1158 75 0 0 chr5 125027247 125027393 -27509866 - B1_Mus2 SINE Alu 0 147 2 7 1538 198 103 0 0 chr5 125029284 125029313 -27507946 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 7 1538 242 306 59 39 chr5 125029322 125029424 -27507835 - PB1D10 SINE Alu -7 110 7 7 1538 493 261 162 7 chr5 125029345 125029499 -27507760 - ID_B1 SINE B4 -45 179 2 7 1538 754 207 274 0 chr5 125029936 125030100 -27507159 - B3 SINE B2 -7 209 1 7 1538 297 0 0 0 chr5 125030133 125030166 -27507093 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1538 864 150 8 0 chr5 125030169 125030302 -27506957 - B1_Mus1 SINE Alu -13 135 2 7 1538 623 208 32 8 chr5 125030359 125030485 -27506774 - RSINE1 SINE B4 -35 130 2 7 1538 256 267 33 0 chr5 125030510 125030570 -27506689 - L2 LINE L2 -611 2808 2747 7 1538 337 297 59 10 chr5 125030897 125030999 -27506260 + PB1D10 SINE Alu 2 108 -9 7 1538 246 252 98 71 chr5 125031011 125031193 -27506066 + B3 SINE B2 5 215 -1 8 1538 779 243 82 11 chr5 125031465 125031648 -27505611 + ID_B1 SINE B4 3 198 -26 8 1538 31 0 0 0 chr5 125031649 125031680 -27505579 + AT_rich Low_complexity Low_complexity 1 31 0 8 1538 491 278 37 9 chr5 125031911 125032020 -27505239 - B1_Mur1 SINE Alu -31 118 7 8 1538 435 275 75 0 chr5 125032063 125032183 -27505076 - RSINE1 SINE B4 -26 139 11 8 1538 278 288 68 0 chr5 125032212 125032285 -27504974 - ID SINE ID -145 79 2 8 1538 252 261 61 102 chr5 125032622 125032720 -27504539 + PB1D7 SINE Alu 1 94 -26 8 1538 304 294 123 25 chr5 125032807 125032929 -27504330 - L1ME1 LINE L1 -124 6055 5922 8 1538 638 266 20 20 chr5 125032982 125033128 -27504131 - RSINE1 SINE B4 -19 146 1 8 1538 1014 94 141 0 chr5 125033159 125033329 -27503930 - B2_Mm2 SINE B2 0 195 2 8 1538 970 83 75 0 chr5 125033336 125033469 -27503790 - B1_Mus2 SINE Alu 0 147 5 9 1538 248 236 85 47 chr5 125034390 125034519 -27502740 - Lx8 LINE L1 -5 7468 7335 9 1538 231 277 17 26 chr5 125034522 125034637 -27502622 + CT-rich Low_complexity Low_complexity 2 115 0 9 1538 242 291 0 0 chr5 125034677 125034732 -27502527 + PB1D9 SINE Alu 3 57 -63 9 1538 1130 269 44 12 chr5 125034741 125035079 -27502180 - Lx8 LINE L1 -179 7294 6946 9 1538 1251 42 0 0 chr5 125035269 125035412 -27501847 - B1_Mus1 SINE Alu -4 144 2 9 1538 421 226 8 102 chr5 125035485 125035613 -27501646 - PB1D10 SINE Alu -1 116 1 9 1538 183 139 0 0 chr5 125035698 125035734 -27501525 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 9 1538 513 158 116 0 chr5 125035734 125035829 -27501430 - B1_Mus2 SINE Alu -1 146 41 9 1538 1130 88 0 0 chr5 125035902 125036050 -27501209 - B1_Mus1 SINE Alu 0 148 1 9 1538 632 266 44 3 chr5 125036124 125036313 -27500946 + B3 SINE B2 1 198 0 9 1538 326 296 11 0 chr5 125036363 125036451 -27500808 - B3A SINE B2 -108 90 2 1 1538 1275 89 5 50 chr5 125036606 125036619 -27500640 - B2_Mm1a SINE B2 0 193 181 1 1538 1282 34 0 0 chr5 125036619 125036766 -27500493 - B1_Mm SINE Alu 0 147 1 1 1538 1275 89 5 50 chr5 125036766 125036954 -27500305 - B2_Mm1a SINE B2 -13 180 1 1 1538 1673 183 67 28 chr5 125037320 125037679 -27499580 - ORR1D1 LTR MaLR 0 374 2 1 1538 722 204 14 7 chr5 125037739 125037882 -27499377 + B3A SINE B2 2 145 -53 1 1538 225 0 0 0 chr5 125037882 125037907 -27499352 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1538 843 150 83 0 chr5 125037927 125038060 -27499199 - B1_Mur3 SINE Alu -5 144 1 1 1538 225 206 77 31 chr5 125038085 125038150 -27499109 - L1MB2 LINE L1 -52 6119 6052 1 1538 1306 146 14 19 chr5 125038198 125038414 -27498845 - B3 SINE B2 0 216 2 1 1538 1114 88 0 0 chr5 125038866 125039013 -27498246 - B1_Mus1 SINE Alu 0 148 2 1 1538 556 162 44 145 chr5 125038872 125039031 -27498228 - B4A SINE B4 -71 221 79 1 1538 506 163 54 94 chr5 125039460 125039609 -27497650 + B1_Mur1 SINE Alu 7 149 0 1 1538 5183 66 0 5 chr5 125039613 125040269 -27496990 + L1Md_F2 LINE L1 5930 6582 0 1 1538 224 303 0 38 chr5 125040432 125040444 -27496815 + B4A SINE B4 77 85 -207 1 1538 539 252 7 49 chr5 125040444 125040564 -27496695 + B1_Mur1 SINE Alu 3 116 -33 1 1538 661 201 58 22 chr5 125040564 125040701 -27496558 + RSINE1 SINE B4 3 144 -21 1 1538 370 222 49 65 chr5 125040993 125041106 -27496153 + B1_Mur4 SINE Alu 1 149 -1 1 1538 812 158 56 12 chr5 125041108 125041251 -27496008 + B3 SINE B2 2 139 -56 1 1538 613 14 0 0 chr5 125041254 125041325 -27495934 + B1_Mm SINE Alu 70 140 -7 1 1538 738 152 106 0 chr5 125041643 125041775 -27495484 - B1_Mur4 SINE Alu 0 150 5 1 1538 254 316 42 10 chr5 125041787 125041883 -27495376 - ID_B1 SINE B4 -40 184 86 1 1538 259 324 0 13 chr5 125041811 125041886 -27495373 - PB1D10 SINE Alu -42 75 2 1 1538 818 252 30 25 chr5 125041982 125042185 -27495074 - B3 SINE B2 -11 205 2 1 1538 223 244 0 0 chr5 125042374 125042415 -27494844 + B1F2 SINE Alu 31 71 -78 1 192 388 277 0 47 chr5 125042605 125042711 -27494548 + PB1D10 SINE Alu 2 102 -15 1 1539 342 256 39 56 chr5 125042763 125042898 -27494361 - PB1D9 SINE Alu -10 139 6 1 1539 650 280 13 6 chr5 125043161 125043319 -27493940 + RSINE1 SINE B4 3 161 -4 1 1539 189 94 0 0 chr5 125043447 125043479 -27493780 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1539 724 270 19 0 chr5 125044988 125045147 -27492112 + RSINE1 SINE B4 2 163 -2 1 1539 760 215 12 24 chr5 125045270 125045437 -27491822 - RSINE1 SINE B4 0 165 1 1 1539 298 280 40 60 chr5 125046443 125046543 -27490716 + PB1D10 SINE Alu 10 106 -43 1 1539 676 211 22 8 chr5 125046621 125046755 -27490504 + B1_Mur1 SINE Alu 14 149 0 1 1539 403 159 297 36 chr5 125046921 125047032 -27490227 + B1_Mur4 SINE Alu 5 144 -6 1 1539 947 193 17 6 chr5 125047016 125047193 -27490066 + B3 SINE B2 38 216 0 1 1539 182 160 132 57 chr5 125047525 125047578 -27489681 + MIRm SINE MIR 173 229 -47 1 1539 1095 88 0 0 chr5 125047722 125047859 -27489400 + B1_Mus2 SINE Alu 2 138 -9 1 1539 302 42 0 41 chr5 125047859 125047908 -27489351 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1539 489 204 256 6 chr5 125048350 125048518 -27488741 - B3 SINE B2 -6 210 1 1 1539 294 255 144 9 chr5 125049345 125049386 -27487873 + MT2B LTR ERVL 115 170 -431 1 1539 282 293 142 28 chr5 125049386 125049502 -27487757 + B1_Mus2 SINE Alu 1 117 0 1 1539 2268 117 169 6 chr5 125049872 125050234 -27487025 - MTC LTR MaLR 0 421 1 1 1539 396 294 18 18 chr5 125050312 125050423 -27486836 + PB1D10 SINE Alu 7 117 0 1 1539 600 219 0 0 chr5 125050425 125050539 -27486720 + B3 SINE B2 1 114 -102 1 1539 789 178 130 13 chr5 125050538 125050692 -27486567 - B3 SINE B2 -43 173 2 1 1539 450 0 0 0 chr5 125050869 125050919 -27486340 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1539 776 257 29 19 chr5 125051043 125051249 -27486010 + B3 SINE B2 1 208 -8 1 1539 803 196 14 27 chr5 125051289 125051436 -27485823 + B1_Mur1 SINE Alu 5 149 0 1 1539 302 275 50 0 chr5 125051514 125051594 -27485665 + B3A SINE B2 80 163 -35 1 1539 374 188 28 28 chr5 125051628 125051699 -27485560 + ID SINE ID 3 73 -151 1 1539 312 27 0 0 chr5 125051725 125051762 -27485497 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1539 358 115 280 65 chr5 125052325 125052418 -27484841 - B1_Mur1 SINE Alu -1 148 36 1 1539 602 270 36 31 chr5 125052425 125052440 -27484819 - B3A SINE B2 0 198 184 1 1539 419 0 20 0 chr5 125052440 125052491 -27484768 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1539 602 270 36 31 chr5 125052491 125052670 -27484589 - B3A SINE B2 -15 183 3 1 1539 279 0 0 0 chr5 125052739 125052770 -27484489 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1539 848 151 7 28 chr5 125052812 125052955 -27484304 + B1_Mur2 SINE Alu 1 140 -9 1 1539 207 0 0 0 chr5 125053339 125053362 -27483897 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1539 1016 252 5 5 chr5 125053365 125053584 -27483675 + ID_B1 SINE B4 1 219 -5 1 1539 225 0 0 0 chr5 125053942 125053967 -27483292 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1539 518 230 30 0 chr5 125053967 125054067 -27483192 - ID_B1 SINE B4 -9 215 113 1 1539 360 288 52 35 chr5 125054067 125054082 -27483177 - B1_Mur1 SINE Alu -9 140 24 1 1539 255 31 0 0 chr5 125054241 125054273 -27482986 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1539 998 75 90 0 chr5 125054273 125054400 -27482859 - B1_Mur4 SINE Alu -9 141 3 1 1539 331 279 190 42 chr5 125054401 125054543 -27482716 - RSINE1 SINE B4 0 165 3 1 1539 513 248 1 12 chr5 125054550 125054666 -27482593 - B1F SINE Alu -6 114 1 1 1539 653 158 64 40 chr5 125054778 125054903 -27482356 - B1_Mur1 SINE Alu 0 149 22 1 1539 180 0 0 0 chr5 125055113 125055133 -27482126 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 1 1539 2046 221 55 33 chr5 125055613 125056123 -27481136 - RLTR11A2 LTR ERVK 0 527 7 1 1539 242 312 25 84 chr5 125056076 125056195 -27481064 + PB1D7 SINE Alu 5 116 -4 1 1539 1223 107 0 11 chr5 125056296 125056475 -27480784 + B2_Mm2 SINE B2 1 177 -18 1 1539 258 183 113 32 chr5 125056483 125056545 -27480714 + B1_Mur2 SINE Alu 82 148 -1 1 1539 333 238 0 12 chr5 125056565 125056646 -27480613 + B1_Mur3 SINE Alu 1 80 -69 1 1539 379 167 0 53 chr5 125056833 125056909 -27480350 - PB1D10 SINE Alu -9 108 37 1 1539 363 181 17 8 chr5 125057051 125057168 -27480091 + (TG)n Simple_repeat Simple_repeat 2 119 0 1 1539 209 135 0 19 chr5 125057197 125057250 -27480009 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1539 617 244 106 78 chr5 125057282 125057566 -27479693 - B4 SINE B4 0 292 1 1 1539 568 259 36 0 chr5 125058269 125058408 -27478851 + ID_B1 SINE B4 79 222 -2 1 1539 704 133 8 0 chr5 125058660 125058780 -27478479 + (TC)n Simple_repeat Simple_repeat 2 122 0 1 1539 1137 68 0 0 chr5 125058807 125058954 -27478305 - B1_Mm SINE Alu 0 147 1 1 1539 1279 68 28 0 chr5 125058954 125059130 -27478129 - B2_Mm1a SINE B2 -10 183 2 1 1539 1438 68 5 0 chr5 125059487 125059679 -27477580 + B2_Mm1a SINE B2 1 193 0 1 1539 315 161 0 3 chr5 125059696 125059759 -27477500 - B1_Mur4 SINE Alu -37 112 51 1 1539 309 294 39 0 chr5 125060115 125060217 -27477042 - PB1D7 SINE Alu -12 108 3 1 1539 355 38 19 19 chr5 125060536 125060590 -27476669 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 1 1539 774 52 0 94 chr5 125060592 125060719 -27476540 - B1_Mus1 SINE Alu -6 142 28 1 1539 21 57 0 0 chr5 125060727 125060762 -27476497 + AT_rich Low_complexity Low_complexity 1 35 0 1 1539 1385 54 38 0 chr5 125060772 125060958 -27476301 - B2_Mm2 SINE B2 -2 193 1 1 1539 858 170 7 0 chr5 125061744 125061891 -27475368 - B1_Mus1 SINE Alu 0 148 1 1 1539 191 242 0 16 chr5 125062306 125062369 -27474890 + CT-rich Low_complexity Low_complexity 1 62 0 1 1539 313 218 78 19 chr5 125062372 125062475 -27474784 - L1MEe LINE L1 -4054 800 692 1 1539 265 295 77 0 chr5 125062479 125062557 -27474702 - ID_B1 SINE B4 -60 164 81 1 1539 836 167 0 0 chr5 125062783 125062927 -27474332 - B1_Mur2 SINE Alu -2 147 4 1 1539 187 125 41 20 chr5 125062932 125062981 -27474278 + (GTTTG)n Simple_repeat Simple_repeat 5 54 0 1 1539 873 161 0 13 chr5 125062981 125063132 -27474127 - B1_Mur3 SINE Alu 0 149 1 1 1539 430 162 96 42 chr5 125063152 125063319 -27473940 - RMER17C LTR ERVK -140 270 95 1 1539 905 75 97 0 chr5 125063331 125063465 -27473794 + B1_Mm SINE Alu 1 147 0 1 1539 33 66 0 0 chr5 125063465 125063526 -27473733 + AT_rich Low_complexity Low_complexity 1 61 0 1 1539 272 299 0 25 chr5 125063593 125063672 -27473587 + B4A SINE B4 216 292 0 1 1539 618 222 156 45 chr5 125063746 125063925 -27473334 + B3 SINE B2 17 215 -1 1 1539 180 111 0 0 chr5 125064104 125064131 -27473128 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1539 872 109 72 7 chr5 125064132 125064271 -27472988 - B1_Mus1 SINE Alu 0 148 1 1 1539 228 67 0 0 chr5 125064282 125064312 -27472947 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1539 1129 114 17 0 chr5 125064361 125064537 -27472722 - B2_Mm1t SINE B2 -14 179 1 2 1539 1097 71 0 0 chr5 125064564 125064719 -27472540 - B2_Mm1a SINE B2 0 193 39 2 1539 490 233 0 33 chr5 125065441 125065561 -27471698 + PB1D10 SINE Alu 2 117 0 2 1539 290 185 0 0 chr5 125065607 125065661 -27471598 + B3A SINE B2 37 90 -108 2 1539 947 45 105 0 chr5 125065926 125066059 -27471200 + B1_Mus2 SINE Alu 1 147 0 2 1539 484 184 14 1 chr5 125066094 125066191 -27471068 + B1_Mus2 SINE Alu 5 103 -46 2 1539 298 244 103 0 chr5 125066178 125066256 -27471003 - B1F2 SINE Alu -12 137 52 2 1539 274 205 118 24 chr5 125066205 125066290 -27470969 - MT2B LTR ERVL -342 259 167 2 1539 239 242 76 0 chr5 125066322 125066388 -27470871 - PB1D7 SINE Alu -7 113 43 2 1539 760 66 0 9 chr5 125066724 125066831 -27470428 - B1_Mus2 SINE Alu 0 147 42 2 1539 268 279 34 68 chr5 125066746 125066892 -27470367 - RLTR25B LTR ERVK -507 521 381 2 1539 351 0 0 0 chr5 125066927 125066966 -27470293 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2 1539 1162 47 0 0 chr5 125066967 125067115 -27470144 - B1_Mus1 SINE Alu 0 148 1 2 1539 478 173 175 35 chr5 125067120 125067234 -27470025 - B1_Mur3 SINE Alu -19 130 1 2 1539 645 148 331 6 chr5 125067285 125067448 -27469811 - B3 SINE B2 0 216 1 2 1539 675 259 45 45 chr5 125067464 125067662 -27469597 - B3A SINE B2 0 198 1 2 1539 325 254 8 81 chr5 125067676 125067800 -27469459 - PB1D10 SINE Alu 0 117 3 2 1539 1904 119 28 12 chr5 125068674 125068996 -27468263 - ORR1A4 LTR MaLR -2 327 1 2 1539 737 177 211 21 chr5 125069528 125069718 -27467541 - URR1A DNA MER1_type 0 226 1 2 1539 696 239 21 7 chr5 125069781 125069941 -27467318 + ID_B1 SINE B4 82 248 -44 2 1539 335 181 72 0 chr5 125069962 125070045 -27467214 - PB1D10 SINE Alu 0 117 29 2 1539 264 77 0 0 chr5 125070576 125070615 -27466644 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1539 252 185 0 0 chr5 125070702 125070756 -27466503 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1539 265 245 102 0 chr5 125070949 125071041 -27466218 + PB1D10 SINE Alu 15 112 -5 2 1539 527 284 92 0 chr5 125071056 125071197 -27466062 + RSINE1 SINE B4 6 159 -6 2 1539 530 263 68 31 chr5 125071223 125071415 -27465844 - L1MB5 LINE L1 -47 6127 5929 2 1539 431 289 78 48 chr5 125071440 125071811 -27465448 - L1MB5 LINE L1 -317 5857 5476 2 1539 489 321 12 12 chr5 125071839 125072003 -27465256 - RSINE1 SINE B4 0 165 2 2 1539 798 157 45 13 chr5 125072029 125072184 -27465075 - B3 SINE B2 0 216 57 2 1539 1117 75 7 0 chr5 125072256 125072403 -27464856 + B1_Mus1 SINE Alu 1 148 0 2 1539 1141 83 47 0 chr5 125072437 125072606 -27464653 + B2_Mm2 SINE B2 1 177 -18 2 1539 920 129 0 13 chr5 125072670 125072819 -27464440 - B1_Mur3 SINE Alu -2 147 1 2 1539 253 158 0 0 chr5 125072819 125072857 -27464402 - B3A SINE B2 -156 42 5 2 1539 1060 142 5 31 chr5 125073674 125073870 -27463389 - B2_Mm1a SINE B2 -2 191 1 2 1539 27 29 0 0 chr5 125073873 125073907 -27463352 + AT_rich Low_complexity Low_complexity 1 34 0 2 1539 730 209 150 0 chr5 125073907 125074094 -27463165 - B3 SINE B2 -1 215 1 2 1539 878 270 63 140 chr5 125076240 125076513 -27460746 - RLTR18 LTR ERVK -3 613 354 2 1539 1181 93 26 37 chr5 125076513 125076703 -27460556 + B2_Mm2 SINE B2 2 189 -6 2 1539 878 270 63 140 chr5 125076703 125077093 -27460166 - RLTR18 LTR ERVK -263 353 1 2 1539 574 149 19 9 chr5 125077315 125077423 -27459836 - PB1D9 SINE Alu -9 111 3 2 1539 354 272 11 0 chr5 125078693 125078785 -27458474 - B1_Mur2 SINE Alu -51 98 6 2 1539 690 268 31 5 chr5 125078784 125078979 -27458280 - MTD LTR MaLR -208 211 12 2 1539 277 109 18 18 chr5 125079165 125079221 -27458038 + (GGAGA)n Simple_repeat Simple_repeat 1 56 0 2 1539 234 246 14 84 chr5 125079227 125079298 -27457961 + B4 SINE B4 81 146 -146 2 1539 370 208 128 10 chr5 125079244 125079346 -27457913 + PB1D9 SINE Alu 7 120 0 2 1539 342 293 8 33 chr5 125079360 125079480 -27457779 + PB1D10 SINE Alu 1 117 0 2 1539 201 246 27 14 chr5 125079625 125079699 -27457560 + (CGG)n Simple_repeat Simple_repeat 1 75 0 2 1539 181 280 0 0 chr5 125079971 125080021 -27457238 - L2a LINE L2 -259 3167 3118 2 1539 207 299 68 43 chr5 125080018 125080179 -27457080 - L2b LINE L2 -156 3219 3055 2 1539 346 179 77 0 chr5 125081526 125081604 -27455655 + PB1D10 SINE Alu 28 111 -6 2 1539 517 225 87 65 chr5 125081604 125081789 -27455470 + B3A SINE B2 3 191 -7 2 1539 325 85 34 0 chr5 125081798 125081857 -27455402 + B1_Mm SINE Alu 87 147 0 2 1539 188 34 0 33 chr5 125081857 125081887 -27455372 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 2 1539 421 221 124 0 chr5 125082599 125082712 -27454547 + B1_Mur3 SINE Alu 1 127 -22 2 1539 344 211 106 80 chr5 125082820 125082933 -27454326 - PB1D10 SINE Alu -1 116 1 2 1539 405 238 109 0 chr5 125082840 125082941 -27454318 - ID_B1 SINE B4 -39 185 74 2 1539 181 0 0 65 chr5 125083005 125083036 -27454223 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1539 934 104 8 0 chr5 125083635 125083769 -27453490 + B1_Mus1 SINE Alu 1 135 -13 2 1539 678 130 0 0 chr5 125083780 125083888 -27453371 + (GAAA)n Simple_repeat Simple_repeat 3 110 0 2 1539 785 64 9 0 chr5 125084006 125084115 -27453144 + B1_Mus1 SINE Alu 39 148 0 2 1539 659 161 133 18 chr5 125084373 125084398 -27452861 - B2_Mm2 SINE B2 -8 187 163 2 1539 180 0 0 0 chr5 125084398 125084418 -27452841 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2 1539 659 161 133 18 chr5 125084418 125084557 -27452702 - B2_Mm2 SINE B2 -33 162 4 2 1539 1216 118 0 30 chr5 125084599 125084800 -27452459 - B2_Mm2 SINE B2 0 195 1 2 1539 384 312 48 32 chr5 125084834 125085082 -27452177 - Lx8 LINE L1 0 7473 7222 2 1539 423 274 9 0 chr5 125085171 125085277 -27451982 - ID_B1 SINE B4 -16 208 102 2 1539 384 191 71 176 chr5 125085280 125085322 -27451937 - B2_Mm2 SINE B2 0 195 149 2 1539 186 118 0 0 chr5 125085322 125085356 -27451903 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1539 468 191 71 176 chr5 125085356 125085523 -27451736 - B3A SINE B2 -38 160 8 2 1539 23 68 0 0 chr5 125085551 125085595 -27451664 + AT_rich Low_complexity Low_complexity 1 44 0 2 1539 1531 47 0 0 chr5 125085595 125085787 -27451472 - B2_Mm1a SINE B2 0 193 2 2 1539 520 201 124 65 chr5 125085791 125085977 -27451282 - B3A SINE B2 0 198 2 2 1539 710 164 35 21 chr5 125085996 125086139 -27451120 - B1_Mus1 SINE Alu 0 148 4 2 1539 559 194 111 44 chr5 125087116 125087251 -27450008 - B1_Mur1 SINE Alu 0 149 6 2 1539 243 321 71 65 chr5 125087117 125087287 -27449972 - B4 SINE B4 -67 225 55 2 1539 358 232 91 0 chr5 125088300 125088399 -27448860 - ID_B1 SINE B4 -13 211 104 2 1539 256 280 143 8 chr5 125088399 125088419 -27448840 - B1_Mur3 SINE Alu -13 136 2 2 1539 233 163 22 0 chr5 125088461 125088512 -27448747 - B1_Mur2 SINE Alu -9 140 60 2 1539 1158 61 0 0 chr5 125088744 125088891 -27448368 - B1_Mm SINE Alu 0 147 1 2 1539 557 194 77 36 chr5 125088891 125089075 -27448184 - B3 SINE B2 -9 186 1 2 1539 931 167 48 29 chr5 125089080 125089290 -27447969 - B3 SINE B2 -2 214 1 2 1539 270 233 144 0 chr5 125090227 125090317 -27446942 - RSINE1 SINE B4 -47 118 16 2 1539 400 145 0 0 chr5 125090413 125090475 -27446784 - ID_B1 SINE B4 -3 221 160 2 1539 371 114 30 210 chr5 125090415 125090515 -27446744 - B1F SINE Alu -5 144 63 2 1539 299 180 0 0 chr5 125090475 125090525 -27446734 - ID_B1 SINE B4 -15 209 160 2 1539 335 168 74 233 chr5 125090521 125090571 -27446688 - B1F1 SINE Alu -11 138 3 2 1539 443 223 161 0 chr5 125090571 125090683 -27446576 - ID_B1 SINE B4 -11 213 84 2 1539 26 74 0 0 chr5 125090767 125090821 -27446438 + AT_rich Low_complexity Low_complexity 1 54 0 2 1539 759 228 92 0 chr5 125090831 125091015 -27446244 - B3 SINE B2 -12 204 4 2 1539 1183 41 0 7 chr5 125091034 125091182 -27446077 - B1_Mm SINE Alu 0 147 1 2 1539 290 330 96 25 chr5 125093146 125093345 -27443914 + MER82 DNA MER2_type 3 215 -438 2 1539 2181 111 0 15 chr5 125093436 125093767 -27443492 - ORR1A3 LTR MaLR 0 326 1 2 1539 5034 120 84 91 chr5 125093767 125095079 -27442180 - ORR1A3-int LTR MaLR 0 1963 64 2 1539 878 127 6 25 chr5 125095050 125095211 -27442048 - ORR1A3 LTR MaLR -171 158 1 2 1539 327 237 103 17 chr5 125095213 125095329 -27441930 + MER82 DNA MER2_type 353 478 -175 2 1539 299 177 32 0 chr5 125096158 125096220 -27441039 - PB1D10 SINE Alu -45 72 9 2 1539 805 126 16 0 chr5 125097604 125097731 -27439528 + B3 SINE B2 2 130 -86 2 1540 719 188 59 26 chr5 125191232 125191385 -27345874 - RSINE1 SINE B4 -5 160 3 2 1540 889 140 12 0 chr5 125191458 125191622 -27345637 + CT-rich Low_complexity Low_complexity 4 169 0 2 1540 306 250 12 24 chr5 125192789 125192871 -27344388 - PB1 SINE Alu -45 82 2 2 1540 369 294 8 25 chr5 125192871 125192926 -27344333 - ID SINE ID -145 79 27 2 1540 592 177 26 17 chr5 125194755 125194870 -27342389 - RSINE1 SINE B4 -17 148 33 2 1540 398 69 17 0 chr5 125194907 125194965 -27342294 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1540 505 226 43 17 chr5 125194989 125195106 -27342153 - RSINE1 SINE B4 -43 122 3 2 1540 865 221 53 24 chr5 125195106 125195144 -27342115 - B3 SINE B2 0 216 181 2 1540 270 0 0 0 chr5 125195144 125195174 -27342085 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 2 1540 865 221 53 24 chr5 125195174 125195344 -27341915 - B3 SINE B2 -36 180 4 2 1540 650 152 96 29 chr5 125195700 125195836 -27341423 + B1_Mur3 SINE Alu 5 149 0 2 1540 261 83 0 0 chr5 125195838 125195874 -27341385 + (A)n Simple_repeat Simple_repeat 1 36 0 2 1540 325 231 119 91 chr5 125195923 125196066 -27341193 + B3A SINE B2 36 182 -16 3 1540 921 97 0 7 chr5 125196110 125196245 -27341014 + B2_Mm2 SINE B2 56 189 -6 3 1540 879 193 115 0 chr5 125196250 125196442 -27340817 + B3 SINE B2 3 216 0 3 1540 315 0 0 0 chr5 125197110 125197145 -27340114 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1540 1177 14 0 0 chr5 125197145 125197284 -27339975 - B1_Mm SINE Alu -8 139 1 3 1540 975 100 0 0 chr5 125197293 125197433 -27339826 - B1_Mus1 SINE Alu -6 142 3 3 1540 448 247 69 62 chr5 125197433 125197474 -27339785 - MT2B LTR ERVL -442 159 118 3 1540 313 247 55 22 chr5 125197451 125197542 -27339717 - U6 snRNA snRNA -10 97 4 3 1540 480 299 6 54 chr5 125197591 125197666 -27339593 - B4 SINE B4 -14 278 208 3 1540 1038 144 0 0 chr5 125197666 125197846 -27339413 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1540 294 50 0 0 chr5 125197846 125197885 -27339374 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1540 480 299 6 54 chr5 125197885 125197974 -27339285 - B4 SINE B4 -85 207 122 3 1540 373 306 26 0 chr5 125198457 125198647 -27338612 - L1M3 LINE L1 -456 5715 5519 3 1540 637 229 89 22 chr5 125200442 125200621 -27336638 + B3A SINE B2 2 192 -6 3 1540 720 248 6 6 chr5 125200640 125200798 -27336461 + RSINE1 SINE B4 2 159 -6 3 1540 712 138 122 0 chr5 125200999 125201083 -27336176 - B1_Mur2 SINE Alu -8 141 58 3 1540 189 107 0 0 chr5 125201083 125201111 -27336148 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 3 1540 712 138 122 0 chr5 125201111 125201149 -27336110 - B1_Mur2 SINE Alu -92 57 5 3 1540 525 242 33 0 chr5 125201233 125201353 -27335906 - RSINE1 SINE B4 -39 126 3 3 1540 420 20 0 0 chr5 125201552 125201601 -27335658 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 3 1540 1404 58 11 5 chr5 125201617 125201806 -27335453 + B2_Mm2 SINE B2 2 191 -4 3 1540 1158 41 0 0 chr5 125201815 125201953 -27335306 + B1_Mus2 SINE Alu 1 138 -9 3 1540 183 42 0 0 chr5 125201953 125201977 -27335282 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1540 618 248 38 19 chr5 125203231 125203403 -27333856 + ID_B1 SINE B4 52 223 -1 3 1540 231 286 43 0 chr5 125204269 125204339 -27332920 - PB1D10 SINE Alu -28 89 17 3 1540 1170 212 180 17 chr5 125204944 125205299 -27331960 - MTD LTR MaLR 0 419 7 3 1540 450 185 87 0 chr5 125206103 125206195 -27331064 - B1F SINE Alu -8 141 42 3 1540 1390 57 17 0 chr5 125206316 125206493 -27330766 + B2_Mm2 SINE B2 2 181 -14 3 1540 510 275 102 1 chr5 125206728 125206883 -27330376 - ID_B1 SINE B4 -37 255 81 3 1540 777 22 0 0 chr5 125207685 125207776 -27329483 + (TTC)n Simple_repeat Simple_repeat 3 93 0 3 1540 309 204 0 0 chr5 125207791 125207845 -27329414 + ID_B1 SINE B4 169 222 -2 3 1540 777 293 66 16 chr5 125207988 125208231 -27329028 - B4 SINE B4 -36 256 2 3 1540 852 249 9 19 chr5 125208682 125208895 -27328364 - B3 SINE B2 -5 211 1 3 1540 563 252 21 99 chr5 125208908 125209141 -27328118 - ID_B1 SINE B4 -7 217 3 3 1540 393 60 75 33 chr5 125209715 125209835 -27327424 + A-rich Low_complexity Low_complexity 2 126 0 3 1540 511 210 160 0 chr5 125209898 125210017 -27327242 - B3 SINE B2 -78 138 1 3 1540 287 240 27 0 chr5 125210147 125210222 -27327037 + (CCCCG)n Simple_repeat Simple_repeat 3 79 0 3 1540 396 140 62 74 chr5 125210636 125210741 -27326518 - B1_Mur2 SINE Alu -8 141 9 3 1540 331 259 96 30 chr5 125210761 125210928 -27326331 - B4 SINE B4 -113 179 2 3 1540 762 240 52 29 chr5 125210961 125211171 -27326088 - B3 SINE B2 -1 215 1 3 1540 1107 102 0 17 chr5 125211202 125211359 -27325900 + B2_Mm2 SINE B2 1 155 -40 3 1540 546 16 0 0 chr5 125211359 125211422 -27325837 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 3 1540 1107 102 0 17 chr5 125211422 125211443 -27325816 + B2_Mm2 SINE B2 156 176 -19 3 1540 545 213 29 14 chr5 125211990 125212128 -27325131 - B1F2 SINE Alu -8 141 2 3 1540 1503 27 16 0 chr5 125212310 125212496 -27324763 + B2_Mm1t SINE B2 2 190 -3 3 1540 336 184 66 0 chr5 125212506 125212582 -27324677 - B1F SINE Alu -51 98 18 3 1540 284 48 24 0 chr5 125213002 125213044 -27324215 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 3 1540 666 212 0 58 chr5 125213044 125213189 -27324070 - B1_Mus1 SINE Alu -10 138 2 3 1540 732 196 113 38 chr5 125213211 125213397 -27323862 - B3 SINE B2 -7 209 10 3 1540 617 241 129 30 chr5 125213433 125213634 -27323625 - ID_B1 SINE B4 -3 221 1 3 1540 1166 28 7 7 chr5 125213707 125213853 -27323406 - B1_Mm SINE Alu 0 147 2 3 1540 721 285 115 12 chr5 125213947 125214199 -27323060 - B4 SINE B4 -14 278 1 3 1540 411 240 206 0 chr5 125214447 125214622 -27322637 - B3 SINE B2 -5 211 1 3 1540 1031 160 96 34 chr5 125215154 125215340 -27321919 - ORR1C2 LTR MaLR 0 384 178 3 1540 342 0 0 0 chr5 125215340 125215378 -27321881 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 1540 1031 160 96 34 chr5 125215378 125215430 -27321829 - ORR1C2 LTR MaLR -207 177 131 3 1540 233 40 0 91 chr5 125215430 125215485 -27321774 + (CCCCCA)n Simple_repeat Simple_repeat 6 55 0 3 1540 216 97 0 0 chr5 125215515 125215546 -27321713 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 3 1540 1105 28 7 0 chr5 125215553 125215695 -27321564 - B1_Mus1 SINE Alu 0 148 6 3 1540 480 184 0 0 chr5 125215703 125215790 -27321469 - ORR1C2 LTR MaLR -289 89 3 3 1540 324 260 13 0 chr5 125215864 125215941 -27321318 + PB1D9 SINE Alu 5 82 -38 3 1540 1956 166 84 5 chr5 125215945 125216326 -27320933 + MTD LTR MaLR 1 411 -8 3 1540 376 194 0 0 chr5 125216330 125216397 -27320862 + B1_Mur1 SINE Alu 82 148 -1 3 1540 288 327 9 0 chr5 125216474 125216581 -27320678 + (CA)n Simple_repeat Simple_repeat 1 108 0 3 1540 398 346 6 6 chr5 125216598 125216755 -27320504 + (CA)n Simple_repeat Simple_repeat 1 157 0 3 1540 963 70 0 0 chr5 125216774 125216902 -27320357 + (CATATA)n Simple_repeat Simple_repeat 1 128 0 3 1540 878 260 10 0 chr5 125217482 125217686 -27319573 + ID_B1 SINE B4 1 206 -18 3 1540 1056 102 0 28 chr5 125217701 125217882 -27319377 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 3 1540 477 122 0 0 chr5 125217882 125217956 -27319303 + (TTTC)n Simple_repeat Simple_repeat 1 74 0 3 1540 696 139 0 0 chr5 125217956 125218064 -27319195 - B1_Mur3 SINE Alu 0 149 42 3 1540 1027 177 5 16 chr5 125218097 125218286 -27318973 - B3 SINE B2 -24 192 6 3 1540 416 41 375 10 chr5 125218285 125218381 -27318878 - B2_Mm2 SINE B2 -18 177 47 3 1540 972 73 152 0 chr5 125218413 125218564 -27318695 - B2_Mm1t SINE B2 -18 175 2 3 1540 792 257 51 14 chr5 125218575 125218792 -27318467 - B4 SINE B4 -67 225 1 3 1540 2480 159 31 56 chr5 125218837 125218946 -27318313 - RLTR11A2 LTR ERVK -1 526 432 3 1540 5019 104 21 0 chr5 125218946 125219698 -27317561 - Lx2 LINE L1 0 6997 6230 3 1540 2480 159 31 56 chr5 125219698 125220127 -27317132 - RLTR11A2 LTR ERVK -96 431 1 3 1540 537 168 11 2 chr5 125220189 125220294 -27316965 - B1_Mur4 SINE Alu -9 111 2 3 1540 488 268 100 6 chr5 125220311 125220491 -27316768 - B3A SINE B2 -1 197 1 3 1540 366 189 241 9 chr5 125220559 125220671 -27316588 + ORR1E LTR MaLR 1 138 -221 3 1540 1356 71 16 0 chr5 125220847 125221031 -27316228 - B2_Mm1a SINE B2 -5 188 2 3 1540 1182 107 21 11 chr5 125221137 125221326 -27315933 - B2_Mm1t SINE B2 0 193 3 3 1540 849 237 25 5 chr5 125221362 125221561 -27315698 - B3 SINE B2 -10 206 4 3 1540 523 341 9 45 chr5 125221561 125221782 -27315477 - MTD LTR MaLR -206 213 1 3 1540 432 0 0 0 chr5 125222145 125222193 -27315066 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1540 228 215 37 37 chr5 125222522 125222604 -27314655 + ID4 SINE ID 2 83 0 3 1540 610 224 77 55 chr5 125222676 125222879 -27314380 + B3A SINE B2 1 189 -6 3 1540 395 252 31 31 chr5 125222958 125223096 -27314163 - L1MB8 LINE L1 -255 5919 5782 3 1540 348 127 0 0 chr5 125223096 125223151 -27314108 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 1540 457 194 26 53 chr5 125223249 125223363 -27313896 - PB1D9 SINE Alu -7 113 3 3 1540 404 309 11 38 chr5 125223398 125223583 -27313676 - B3A SINE B2 -16 182 3 3 1540 237 164 200 43 chr5 125224298 125224368 -27312891 - B4A SINE B4 -118 174 94 3 1540 525 306 66 19 chr5 125224793 125225044 -27312215 + B4A SINE B4 5 267 -25 3 1540 824 167 76 92 chr5 125225044 125225128 -27312131 + Lx6 LINE L1 7188 7255 -205 3 1540 1100 54 0 20 chr5 125225128 125225279 -27311980 - B1_Mus1 SINE Alu 0 148 1 3 1540 824 167 76 92 chr5 125225279 125225444 -27311815 + Lx6 LINE L1 7256 7433 -27 3 1540 711 149 0 0 chr5 125225444 125225565 -27311694 + (GA)n Simple_repeat Simple_repeat 2 122 0 3 1540 267 186 300 44 chr5 125225565 125225655 -27311604 + MTD LTR MaLR 196 308 -111 3 1540 291 218 0 71 chr5 125225668 125225752 -27311507 + B4A SINE B4 215 292 0 3 1540 960 87 0 0 chr5 125225878 125226027 -27311232 + (TTTC)n Simple_repeat Simple_repeat 1 149 0 3 1540 817 240 29 14 chr5 125226027 125226223 -27311036 - ID_B1 SINE B4 -14 210 11 3 1540 548 178 74 9 chr5 125226276 125226384 -27310875 + B1_Mur1 SINE Alu 34 148 -1 3 1540 530 191 0 19 chr5 125226634 125226741 -27310518 - B3 SINE B2 -111 105 1 3 1540 985 111 0 13 chr5 125227160 125227466 -27309793 + (TG)n Simple_repeat Simple_repeat 1 301 0 3 1540 584 256 74 53 chr5 125227467 125227751 -27309508 - B4A SINE B4 -1 291 2 3 1540 201 147 0 0 chr5 125227922 125227956 -27309303 + (TTCCC)n Simple_repeat Simple_repeat 2 35 0 3 1540 1207 162 186 7 chr5 125228337 125228616 -27308643 - ORR1A4 LTR MaLR 0 329 1 3 1540 228 67 0 0 chr5 125229159 125229189 -27308070 + (TCCA)n Simple_repeat Simple_repeat 3 32 0 3 1540 765 294 8 68 chr5 125229275 125229288 -27307971 - ID_B1 SINE B4 0 224 213 3 1540 781 106 136 0 chr5 125229288 125229420 -27307839 - B1_Mur4 SINE Alu 0 150 1 4 1540 765 294 8 68 chr5 125229420 125229486 -27307773 - ID_B1 SINE B4 -12 212 147 3 1540 1421 73 0 5 chr5 125229486 125229680 -27307579 - B2_Mm2 SINE B2 0 195 3 4 1540 765 294 8 68 chr5 125229680 125229836 -27307423 - ID_B1 SINE B4 -78 146 2 3 1540 642 269 25 49 chr5 125229933 125230136 -27307123 + B3A SINE B2 1 198 0 4 1540 459 209 57 0 chr5 125230329 125230434 -27306825 - PB1D10 SINE Alu -2 115 5 4 1540 733 272 72 0 chr5 125230473 125230668 -27306591 - B3 SINE B2 -1 215 7 4 1540 1436 67 0 25 chr5 125230837 125231037 -27306222 + B2_Mm2 SINE B2 1 195 0 4 1540 509 301 36 41 chr5 125231479 125231673 -27305586 + B3A SINE B2 4 196 -2 4 1540 213 264 0 19 chr5 125231736 125231790 -27305469 + (CACG)n Simple_repeat Simple_repeat 3 55 0 4 1540 1304 88 39 0 chr5 125231810 125231992 -27305267 + B2_Mm2 SINE B2 2 190 -5 4 1540 399 21 0 0 chr5 125232011 125232059 -27305200 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1540 220 261 130 0 chr5 125232077 125232146 -27305113 - RSINE1 SINE B4 -85 80 3 4 1540 314 254 0 0 chr5 125232487 125232558 -27304701 - BC1_Mm scRNA scRNA -60 92 22 4 1540 355 205 26 0 chr5 125232564 125232642 -27304617 - ZP3AR Satellite Satellite -92 120 41 4 1540 322 262 0 0 chr5 125232642 125232722 -27304537 - B1F SINE Alu -1 148 69 4 1540 537 271 69 7 chr5 125232762 125232907 -27304352 - B4A SINE B4 -5 287 134 4 1540 288 53 0 0 chr5 125232914 125232952 -27304307 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1540 243 252 8 32 chr5 125232999 125233015 -27304244 + ORR1B1-int LTR MaLR 635 647 -862 4 1540 904 79 8 0 chr5 125233015 125233141 -27304118 + B1_Mus1 SINE Alu 1 127 -21 4 1540 307 206 10 80 chr5 125233055 125233155 -27304104 + RLTR25B LTR ERVK 442 534 -494 4 1540 287 246 0 0 chr5 125233142 125233203 -27304056 - B4A SINE B4 -226 66 6 4 1540 753 88 46 12 chr5 125233215 125233388 -27303871 + (TA)n Simple_repeat Simple_repeat 2 180 0 4 1540 345 47 0 0 chr5 125233788 125233831 -27303428 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1540 600 234 13 46 chr5 125233831 125233972 -27303287 - B1_Mur3 SINE Alu -10 139 1 4 1540 198 118 0 0 chr5 125234947 125234981 -27302278 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1540 783 287 24 31 chr5 125235004 125235259 -27302000 - B4A SINE B4 -39 253 1 4 1540 1037 52 0 15 chr5 125235395 125235532 -27301727 + B1_Mus1 SINE Alu 1 135 -13 4 1540 372 18 53 0 chr5 125235532 125235589 -27301670 + (CAAA)n Simple_repeat Simple_repeat 1 60 0 4 1540 183 295 13 20 chr5 125235593 125235745 -27301514 + (CATA)n Simple_repeat Simple_repeat 3 153 0 4 1540 492 217 0 36 chr5 125236406 125236516 -27300743 - PB1D9 SINE Alu -13 107 2 4 1540 971 126 0 0 chr5 125236572 125236715 -27300544 - B1_Mus1 SINE Alu 0 148 6 4 1540 509 248 0 8 chr5 125236725 125236843 -27300416 - PB1D10 SINE Alu 0 117 1 4 1540 1335 103 0 0 chr5 125236948 125237142 -27300117 - B2_Mm2 SINE B2 0 195 2 4 1540 387 0 0 0 chr5 125237165 125237208 -27300051 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 4 1540 384 109 0 5 chr5 125237220 125237285 -27299974 - B2_Mm2 SINE B2 -107 109 47 4 1540 616 152 0 0 chr5 125237345 125237444 -27299815 - B2_Mm1t SINE B2 -47 146 48 4 1540 842 214 48 19 chr5 125237646 125237856 -27299403 - B3 SINE B2 0 216 1 4 1540 1997 183 108 41 chr5 125237908 125238398 -27298861 - RLTR12B LTR ERVK 0 528 6 4 1540 186 43 0 0 chr5 125238398 125238421 -27298838 + (TG)n Simple_repeat Simple_repeat 2 24 0 4 1540 613 244 29 7 chr5 125238424 125238560 -27298699 - RSINE1 SINE B4 -24 141 3 4 1540 452 282 40 47 chr5 125239258 125239282 -27297977 - B3A SINE B2 -2 196 178 4 1540 1239 103 0 16 chr5 125239282 125239469 -27297790 + B2_Mm2 SINE B2 2 185 -10 4 1540 452 282 40 47 chr5 125239469 125239593 -27297666 - B3A SINE B2 -21 177 50 4 1540 265 220 43 11 chr5 125239632 125239724 -27297535 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 4 1540 873 189 4 0 chr5 125239731 125239998 -27297261 + (TCCA)n Simple_repeat Simple_repeat 1 268 0 4 1540 571 259 36 7 chr5 125240677 125240817 -27296442 - ID_B1 SINE B4 -65 159 16 4 1540 636 167 14 7 chr5 125240915 125241060 -27296199 + GA-rich Low_complexity Low_complexity 1 146 0 4 1540 379 175 68 67 chr5 125241065 125241181 -27296078 + B1F SINE Alu 1 117 -32 4 1540 277 185 0 58 chr5 125241771 125241840 -27295419 + ID4_ SINE ID 2 66 -17 4 1540 949 232 40 140 chr5 125241840 125242261 -27294998 - MTE2a LTR MaLR 0 379 1 4 1540 928 193 12 0 chr5 125242327 125242493 -27294766 - B3 SINE B2 -43 173 6 4 1540 360 291 33 29 chr5 125242702 125242876 -27294383 - ORR1D2 LTR MaLR 0 370 212 4 1540 273 234 16 0 chr5 125243051 125243115 -27294144 + CT-rich Low_complexity Low_complexity 2 66 0 4 1540 309 136 0 0 chr5 125244238 125244270 -27292989 + (T)n Simple_repeat Simple_repeat 1 32 0 4 1540 1093 82 7 0 chr5 125244270 125244417 -27292842 - B1_Mus1 SINE Alu 0 148 1 4 1540 309 136 0 0 chr5 125244417 125244443 -27292816 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1540 1082 89 107 0 chr5 125244469 125244638 -27292621 - B2_Mm2 SINE B2 -8 187 1 4 1540 312 222 0 0 chr5 125244734 125244806 -27292453 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1540 663 245 53 0 chr5 125244810 125244961 -27292298 - RSINE1 SINE B4 -4 161 3 4 1540 397 273 8 40 chr5 125244982 125245108 -27292151 - B1_Mur2 SINE Alu -9 140 19 4 1540 706 67 0 56 chr5 125245430 125245573 -27291686 + (TCC)n Simple_repeat Simple_repeat 3 137 0 4 1540 1219 47 0 0 chr5 125245573 125245721 -27291538 - B1_Mus1 SINE Alu 0 148 1 4 1540 2162 131 41 18 chr5 125246343 125246733 -27290526 - MTB_Mm LTR MaLR -8 399 1 4 1540 304 293 8 41 chr5 125246761 125246882 -27290377 + PB1D10 SINE Alu 1 117 0 4 1540 566 229 53 8 chr5 125246932 125247064 -27290195 - B1F SINE Alu -11 138 1 4 1540 958 166 47 38 chr5 125247110 125247323 -27289936 - B3 SINE B2 0 216 2 4 1540 314 208 98 10 chr5 125247688 125247790 -27289469 + ORR1E LTR MaLR 1 111 -248 4 1540 240 140 0 91 chr5 125248286 125248341 -27288918 - ID_B1 SINE B4 0 224 175 4 1540 241 278 14 0 chr5 125248294 125248366 -27288893 - PB1D10 SINE Alu -5 112 40 4 1540 332 216 0 13 chr5 125248443 125248518 -27288741 + ID4 SINE ID 4 77 -6 4 1540 475 250 10 0 chr5 125249427 125249531 -27287728 - PB1D10 SINE Alu -11 106 2 4 1540 257 279 36 9 chr5 125249856 125249968 -27287291 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 4 1540 1430 216 44 44 chr5 125249969 125250308 -27286951 - MTE2b LTR MaLR 0 379 41 4 1540 195 69 0 0 chr5 125250555 125250584 -27286675 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1540 183 42 0 0 chr5 125251582 125251606 -27285653 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1540 211 184 0 0 chr5 125251654 125251692 -27285567 + (TGG)n Simple_repeat Simple_repeat 1 38 0 4 1540 210 118 0 0 chr5 125251692 125251726 -27285533 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1540 349 200 0 30 chr5 125251733 125251800 -27285459 - ID4_ SINE ID -15 68 4 4 1540 676 11 44 0 chr5 125251859 125251950 -27285309 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 4 1540 888 142 14 0 chr5 125251951 125252092 -27285167 - B1_Mur3 SINE Alu -6 143 1 4 1540 872 257 9 45 chr5 125252092 125252316 -27284943 - B4A SINE B4 -63 229 14 4 1540 888 327 81 9 chr5 125252316 125252804 -27284455 - L1MB5 LINE L1 -39 6135 5625 4 1540 260 388 96 5 chr5 125253029 125253226 -27284033 - MER44A DNA MER2_type -120 219 5 4 1540 294 50 0 0 chr5 125253636 125253676 -27283583 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1540 1261 128 8 4 chr5 125254522 125254782 -27282477 + ZP3AR Satellite Satellite 1 261 0 4 1540 303 259 136 17 chr5 125254802 125254920 -27282339 + L1MEg LINE L1 1821 1952 -4132 4 1540 326 328 0 63 chr5 125255063 125255190 -27282069 - ZP3AR Satellite Satellite -78 134 16 4 1540 316 257 0 0 chr5 125256196 125256270 -27280989 - ID4 SINE ID 0 83 10 4 1540 226 236 73 0 chr5 125256486 125256541 -27280718 + 4.5SRNA scRNA scRNA 30 88 -6 4 1540 306 179 0 0 chr5 125256492 125256548 -27280711 + ID_B1 SINE B4 123 178 -46 4 1540 1501 46 5 5 chr5 125256577 125256772 -27280487 - B2_Mm2 SINE B2 0 195 1 4 1540 387 182 50 10 chr5 125256776 125256876 -27280383 - B2_Mm2 SINE B2 0 195 92 4 1540 315 182 0 0 chr5 125256878 125256933 -27280326 + ID_B1 SINE B4 168 222 -2 4 1540 527 164 10 0 chr5 125257195 125257299 -27279960 + (TGG)n Simple_repeat Simple_repeat 3 107 0 4 1540 278 289 167 0 chr5 125257322 125257436 -27279823 - MLT2B3 LTR ERVL -414 140 8 4 1540 395 221 150 139 chr5 125258366 125258639 -27278620 - MTEb LTR MaLR -88 291 16 4 1540 347 258 24 35 chr5 125258680 125258900 -27278359 + (CAGAC)n Simple_repeat Simple_repeat 1 217 0 4 1540 295 169 5 153 chr5 125259057 125259266 -27277993 + (CACAC)n Simple_repeat Simple_repeat 3 180 0 4 1540 1125 102 0 7 chr5 125259694 125260001 -27277258 + (TCC)n Simple_repeat Simple_repeat 1 304 0 4 1540 288 261 29 0 chr5 125260002 125260022 -27277237 + C-rich Low_complexity Low_complexity 138 157 0 4 1540 966 122 0 0 chr5 125260022 125260202 -27277057 + (TCC)n Simple_repeat Simple_repeat 1 180 0 4 1540 288 261 29 0 chr5 125260202 125260250 -27277009 + C-rich Low_complexity Low_complexity 88 137 0 4 1540 648 241 138 5 chr5 125260550 125260738 -27276521 + B4A SINE B4 6 218 -74 4 1540 481 296 247 17 chr5 125260743 125260969 -27276290 + B4A SINE B4 2 279 -13 4 1540 267 274 22 66 chr5 125261018 125261109 -27276150 - ID2 SINE ID -53 99 13 5 1540 794 240 10 15 chr5 125261150 125261345 -27275914 - B3A SINE B2 -3 195 2 5 1540 268 250 0 62 chr5 125261520 125261601 -27275658 + ID_B1 SINE B4 79 154 -70 5 1540 490 128 93 0 chr5 125261852 125261938 -27275321 - ID_B1 SINE B4 -1 223 130 5 1540 386 162 133 57 chr5 125261938 125261957 -27275302 - B1F SINE Alu -1 148 36 5 1540 327 267 98 36 chr5 125262012 125262206 -27275053 - RMER20B LTR ERVK 0 516 311 5 1540 477 236 16 47 chr5 125262317 125262446 -27274813 - RMER20B LTR ERVK -502 125 1 5 1540 617 241 88 16 chr5 125263141 125263335 -27273924 - B3 SINE B2 -6 210 3 5 1540 603 99 87 0 chr5 125263417 125263578 -27273681 + CT-rich Low_complexity Low_complexity 2 176 0 5 1540 333 238 92 65 chr5 125263729 125263882 -27273377 + HAL1b LINE L1 1654 1810 -199 5 1540 671 220 14 0 chr5 125263952 125264093 -27273166 - B1_Mur1 SINE Alu -6 143 1 5 1540 738 72 58 13 chr5 125264424 125264578 -27272681 + (TCTCTG)n Simple_repeat Simple_repeat 2 162 0 5 1540 324 0 0 0 chr5 125264580 125264616 -27272643 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1540 319 203 0 0 chr5 125264618 125264677 -27272582 - B1F SINE Alu -29 120 62 5 1540 1042 272 3 21 chr5 125264672 125264957 -27272302 + B4A SINE B4 13 292 0 5 1540 312 381 63 25 chr5 125264983 125265268 -27271991 + L1M4 LINE L1 5523 5818 -366 5 1540 412 196 74 32 chr5 125265268 125265363 -27271896 + ID_B1 SINE B4 80 178 -46 5 1540 301 238 0 0 chr5 125265378 125265441 -27271818 - RSINE1 SINE B4 -101 64 2 5 1540 568 279 55 74 chr5 125265769 125266025 -27271234 - MTEa LTR MaLR -7 372 122 5 1540 1042 181 15 10 chr5 125266046 125266247 -27271012 + B3 SINE B2 1 202 -14 5 1540 635 262 99 36 chr5 125266447 125266700 -27270559 + B4A SINE B4 2 270 -22 5 1540 556 212 58 50 chr5 125267050 125267156 -27270103 + B1F2 SINE Alu 1 114 -35 5 1540 3342 15 8 0 chr5 125267156 125267549 -27269710 - MTA_Mm LTR MaLR 0 396 1 5 1540 556 212 58 50 chr5 125267549 125267581 -27269678 + B1F2 SINE Alu 115 140 -9 5 1540 409 307 68 47 chr5 125267886 125268122 -27269137 - L1MC4 LINE L1 -413 7629 7389 5 1540 238 338 7 34 chr5 125268326 125268473 -27268786 + L1MC4 LINE L1 7732 7874 -168 5 1540 322 184 17 34 chr5 125268498 125268616 -27268643 + GA-rich Low_complexity Low_complexity 2 117 0 5 1540 225 0 0 0 chr5 125268617 125268642 -27268617 + (CAGA)n Simple_repeat Simple_repeat 1 25 0 5 1540 739 102 0 0 chr5 125268942 125269050 -27268209 + B2_Mm2 SINE B2 1 108 -87 5 1540 672 236 67 11 chr5 125269128 125269308 -27267951 + B3 SINE B2 27 216 0 5 1540 1282 56 67 0 chr5 125269387 125269565 -27267694 - B2_Mm2 SINE B2 -5 190 1 5 1540 384 22 0 0 chr5 125270448 125270493 -27266766 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1540 370 241 30 71 chr5 125270524 125270636 -27266623 + B1F1 SINE Alu 3 116 -1 5 1540 783 125 2 3 chr5 125271307 125271433 -27265826 - RLTR16 LTR ERVK -404 174 1 5 1540 422 242 145 0 chr5 125271485 125271609 -27265650 + B1F2 SINE Alu 4 145 -4 5 1540 861 167 0 0 chr5 125271615 125271765 -27265494 + B1_Mur4 SINE Alu 1 150 0 5 1540 180 0 0 0 chr5 125271782 125271802 -27265457 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 5 1540 180 329 60 24 chr5 125272561 125272645 -27264614 + L2b LINE L2 3225 3311 -64 5 1540 1277 71 60 0 chr5 125272915 125273099 -27264160 + B2_Mm2 SINE B2 1 195 0 5 1540 286 279 52 110 chr5 125273124 125273161 -27264098 - B2_Mm2 SINE B2 -8 187 154 5 1540 1002 73 0 0 chr5 125273161 125273297 -27263962 + (CA)n Simple_repeat Simple_repeat 2 137 0 5 1540 448 256 22 38 chr5 125273297 125273432 -27263827 - B3A SINE B2 -42 153 25 5 1540 1091 88 0 0 chr5 125273444 125273591 -27263668 + B1_Mus2 SINE Alu 1 147 0 5 1540 825 250 10 10 chr5 125273617 125273823 -27263436 - B3 SINE B2 -6 210 5 5 1540 3761 115 57 32 chr5 125275138 125275785 -27261474 - Lx4A LINE L1 -1 7057 6395 5 1540 1491 99 56 4 chr5 125275785 125276019 -27261240 + L1_Mur2 LINE L1 5362 5607 -270 5 1540 189 337 9 56 chr5 125276299 125276406 -27260853 + L2b LINE L2 3213 3314 -61 5 1540 974 145 0 0 chr5 125277519 125277664 -27259595 + B1_Mur3 SINE Alu 5 149 0 5 1540 414 248 82 75 chr5 125277680 125277830 -27259429 + B3 SINE B2 48 195 0 5 1540 345 47 0 0 chr5 125277846 125277889 -27259370 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1540 820 325 12 8 chr5 125277932 125278180 -27259079 - B4A SINE B4 -43 249 1 5 1540 906 235 162 0 chr5 125278434 125278711 -27258548 - MLT1F LTR MaLR 0 548 227 5 1540 289 279 0 12 chr5 125278719 125278799 -27258460 - MLT1A1 LTR MaLR -33 375 297 5 1540 495 156 11 10 chr5 125279063 125279167 -27258092 - PB1D9 SINE Alu -4 123 15 5 1540 451 270 19 139 chr5 125279476 125279531 -27257728 - B2_Mm2 SINE B2 -2 193 150 5 1540 363 78 0 0 chr5 125279531 125279582 -27257677 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1540 680 248 8 17 chr5 125279582 125279741 -27257518 - B3A SINE B2 -47 151 5 5 1540 269 316 20 0 chr5 125280070 125280168 -27257091 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 5 1540 401 221 10 0 chr5 125280189 125280293 -27256966 + (TCCA)n Simple_repeat Simple_repeat 1 105 0 5 1540 571 230 17 0 chr5 125280366 125280540 -27256719 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 5 1540 264 229 24 16 chr5 125280565 125280689 -27256570 + (TCCA)n Simple_repeat Simple_repeat 1 125 0 5 1540 457 206 0 37 chr5 125280721 125280908 -27256351 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 5 1540 463 309 115 50 chr5 125281694 125282076 -27255183 - L1MB5 LINE L1 -36 6138 5732 5 1540 1392 135 47 0 chr5 125282412 125282627 -27254632 + URR1B DNA MER1_type 1 225 0 5 1540 380 253 0 0 chr5 125282634 125282717 -27254542 + ID_B1 SINE B4 136 218 -6 5 1540 239 341 11 43 chr5 125282841 125282933 -27254326 + B4 SINE B4 140 228 -64 5 1540 917 144 0 0 chr5 125283279 125283411 -27253848 - B1_Mus1 SINE Alu -15 133 2 5 1540 550 235 58 7 chr5 125283842 125283979 -27253280 + RSINE1 SINE B4 1 144 -21 5 1540 427 187 21 52 chr5 125284508 125284604 -27252655 - PB1D9 SINE Alu -10 110 18 5 1540 337 270 83 99 chr5 125284607 125284629 -27252630 - B2_Mm2 SINE B2 -16 179 162 5 1540 227 79 26 0 chr5 125284629 125284667 -27252592 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1540 686 214 52 2 chr5 125284667 125284825 -27252434 - B3A SINE B2 -34 164 2 5 1540 325 330 8 51 chr5 125285381 125285499 -27251760 + B3 SINE B2 83 195 -21 5 1540 267 79 0 0 chr5 125285535 125285573 -27251686 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 5 1540 1154 45 0 0 chr5 125285573 125285707 -27251552 - B1_Mus1 SINE Alu -12 136 3 5 1540 454 260 7 138 chr5 125287194 125287346 -27249913 + ID_B1 SINE B4 7 138 -86 5 1540 312 189 0 139 chr5 125287815 125287901 -27249358 + ID_B1 SINE B4 151 224 0 5 1540 836 320 45 40 chr5 125288295 125288672 -27248587 - MTE2a LTR MaLR 0 379 1 5 1540 486 267 129 30 chr5 125290250 125290451 -27246808 - MER58A DNA MER1_type 0 224 4 5 1540 1010 309 83 13 chr5 125291110 125291664 -27245595 - L1MB4 LINE L1 0 6180 5588 5 1540 328 218 38 13 chr5 125291689 125291768 -27245491 - ID4 SINE ID -1 82 2 5 1540 1944 84 53 7 chr5 125292087 125292388 -27244871 - ORR1A2 LTR MaLR -8 319 5 5 1540 618 132 88 0 chr5 125292634 125292748 -27244511 + B1_Mus2 SINE Alu 11 134 -13 5 1540 348 24 0 0 chr5 125292750 125292791 -27244468 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 5 1540 522 0 0 0 chr5 125293201 125293259 -27244000 + (TC)n Simple_repeat Simple_repeat 2 59 0 5 1540 22 56 0 0 chr5 125293285 125293321 -27243938 + AT_rich Low_complexity Low_complexity 1 36 0 5 1540 268 255 146 10 chr5 125293386 125293489 -27243770 - MLT1C LTR MaLR -291 176 60 5 1540 353 179 51 0 chr5 125293769 125293847 -27243412 + RSINE1 SINE B4 22 103 -62 5 1540 533 161 0 11 chr5 125294516 125294604 -27242655 - B3 SINE B2 -119 97 11 5 1540 264 341 0 12 chr5 125294528 125294614 -27242645 - RSINE1 SINE B4 -79 86 2 5 1540 886 231 38 9 chr5 125295506 125295716 -27241543 + ID_B1 SINE B4 2 217 -7 5 1540 483 18 0 0 chr5 125295719 125295775 -27241484 + (GGGA)n Simple_repeat Simple_repeat 3 58 0 5 1540 744 12 0 0 chr5 125295778 125295863 -27241396 + (GGAGA)n Simple_repeat Simple_repeat 5 89 0 5 1540 342 342 8 17 chr5 125295869 125295988 -27241271 + RSINE1 SINE B4 8 125 -40 5 1540 252 0 0 0 chr5 125296015 125296043 -27241216 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1540 317 321 135 10 chr5 125296693 125296885 -27240374 - MER20 DNA MER1_type -3 216 1 5 1540 391 309 9 9 chr5 125297140 125297251 -27240008 + B4A SINE B4 7 117 -175 5 1540 195 42 0 0 chr5 125297255 125297279 -27239980 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1540 925 143 215 21 chr5 125297316 125297502 -27239757 + URR1A DNA MER1_type 1 222 -4 5 1540 1046 282 86 30 chr5 125298695 125299196 -27238063 - L1MB7 LINE L1 -4 6180 5664 5 1540 302 243 262 0 chr5 125299219 125299326 -27237933 - RSINE1 SINE B4 -30 135 1 5 1540 190 0 0 62 chr5 125299890 125299922 -27237337 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5 1540 1089 51 73 0 chr5 125299924 125300061 -27237198 - B1_Mus1 SINE Alu 0 148 2 5 1540 1169 187 35 0 chr5 125300544 125300742 -27236517 + B3 SINE B2 1 205 -11 5 1540 1996 114 164 30 chr5 125300742 125301113 -27236146 - BGLII LTR ERVK 0 421 1 5 1540 349 301 96 24 chr5 125301236 125301403 -27235856 - MLT1K LTR MaLR -34 561 383 5 1540 343 306 131 46 chr5 125302088 125302393 -27234866 - L1MB7 LINE L1 -162 6022 5692 5 1540 233 320 29 19 chr5 125302442 125302475 -27234784 - ID_B1 SINE B4 -116 108 3 5 1540 268 264 14 0 chr5 125302475 125302547 -27234712 - ID4 SINE ID -8 75 3 6 1540 280 286 52 60 chr5 125302547 125302681 -27234578 - L1MB7 LINE L1 -509 5675 5543 5 1540 392 266 19 0 chr5 125304088 125304361 -27232898 + (TCCA)n Simple_repeat Simple_repeat 1 278 0 6 1540 759 172 0 0 chr5 125304398 125304561 -27232698 + (TCCA)n Simple_repeat Simple_repeat 3 165 0 6 1540 191 296 0 0 chr5 125304577 125304631 -27232628 - L2b LINE L2 0 3375 3322 6 1541 22 0 0 0 chr5 125305102 125305124 -27232135 + AT_rich Low_complexity Low_complexity 1 22 0 6 1541 270 245 158 83 chr5 125305149 125305208 -27232051 - B4 SINE B4 0 292 229 6 1541 198 26 24 49 chr5 125305208 125305249 -27232010 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 1541 1183 30 0 0 chr5 125305249 125305383 -27231876 - B1_Mus1 SINE Alu -13 135 2 6 1541 632 229 80 44 chr5 125305383 125305566 -27231693 - B4 SINE B4 -64 228 1 6 1541 315 315 129 10 chr5 125305566 125305768 -27231491 - MER33 DNA MER1_type -94 230 5 6 1541 312 322 111 17 chr5 125306127 125306307 -27230952 - Lx8 LINE L1 -122 7351 7155 6 1541 269 286 23 35 chr5 125306344 125306431 -27230828 + Lx8 LINE L1 6730 6815 -658 6 1541 327 286 21 45 chr5 125306523 125306651 -27230608 - MLT1A1 LTR MaLR -1 407 247 6 1541 210 219 0 0 chr5 125308311 125308352 -27228907 + C-rich Low_complexity Low_complexity 1 41 0 6 1541 441 36 0 0 chr5 125309637 125309692 -27227567 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1541 583 158 0 0 chr5 125311524 125311619 -27225640 - PB1D7 SINE Alu -11 109 15 6 1541 243 238 0 143 chr5 125311535 125311633 -27225626 - MT2B LTR ERVL -350 251 168 6 1541 335 296 83 26 chr5 125311725 125311881 -27225378 - L1M5 LINE L1 -675 5449 5285 6 1541 301 280 40 0 chr5 125311889 125311964 -27225295 - RSINE1 SINE B4 -6 159 82 6 1541 388 246 67 101 chr5 125311974 125312123 -27225136 - B4 SINE B4 -147 145 2 6 1541 411 21 0 0 chr5 125312201 125312249 -27225010 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1541 880 319 51 15 chr5 125312389 125312663 -27224596 - B4 SINE B4 -3 289 6 6 1541 243 154 0 0 chr5 125313427 125313466 -27223793 - tRNA-Glu-GAG_ tRNA tRNA -36 39 1 6 1541 255 202 113 54 chr5 125314789 125314910 -27222349 - B3 SINE B2 0 198 67 6 1541 1206 55 0 0 chr5 125319564 125319709 -27217550 + B1_Mus2 SINE Alu 2 146 -1 6 1541 585 297 32 6 chr5 125325489 125325645 -27211614 + RSINE1 SINE B4 2 161 -4 6 1541 886 248 15 5 chr5 125326012 125326207 -27211052 + B3 SINE B2 14 210 -6 6 1541 268 275 88 0 chr5 125326246 125326326 -27210933 - B3 SINE B2 0 216 130 6 1541 309 273 73 29 chr5 125326865 125326944 -27210315 + L1ME4a LINE L1 5980 6059 -65 6 1541 1127 218 9 0 chr5 125326944 125327155 -27210104 + B3 SINE B2 3 215 -1 6 1541 309 273 73 29 chr5 125327155 125327211 -27210048 + L1ME4a LINE L1 6060 6121 -3 6 1541 1995 165 35 90 chr5 125327713 125328193 -27209066 + RMER4A LTR ERVK 1 454 -12 6 1541 1157 69 14 0 chr5 125328230 125328374 -27208885 + B1_Mm SINE Alu 2 147 0 6 1541 8265 170 86 19 chr5 125328374 125329765 -27207494 + MurERV4-int LTR ERVK 31 1494 -3766 6 1541 1361 86 43 0 chr5 125329765 125329951 -27207308 - B2_Mm2 SINE B2 -1 194 1 6 1541 8265 170 86 19 chr5 125329951 125330229 -27207030 + MurERV4-int LTR ERVK 1495 1811 -3449 6 1541 786 188 45 0 chr5 125330212 125330366 -27206893 + MurERV4-int LTR ERVK 5099 5259 -1 6 1541 2498 140 59 46 chr5 125330369 125330826 -27206433 + RMER4A LTR ERVK 4 466 0 6 1541 1124 70 7 7 chr5 125330867 125331012 -27206247 + B1_Mus1 SINE Alu 2 146 -2 6 1541 282 56 0 0 chr5 125331022 125331058 -27206201 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1541 411 320 22 45 chr5 125331655 125331789 -27205470 - B1F SINE Alu -14 135 5 6 1541 981 201 39 25 chr5 125332347 125332551 -27204708 + B3 SINE B2 3 209 -7 6 1541 244 346 51 0 chr5 125332804 125332882 -27204377 - MIR SINE MIR -180 82 1 6 1541 290 300 44 0 chr5 125334465 125334555 -27202704 + ID_B1 SINE B4 131 224 0 6 1541 335 189 0 0 chr5 125334564 125334617 -27202642 + ID2 SINE ID 2 54 -29 6 1541 646 228 8 0 chr5 125334930 125335053 -27202206 - RSINE1 SINE B4 -39 126 3 6 1541 234 0 0 0 chr5 125337023 125337049 -27200210 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1541 403 339 74 0 chr5 125337234 125337355 -27199904 - RSINE1 SINE B4 -13 152 23 6 1541 383 287 11 11 chr5 125338557 125338652 -27198607 - PB1D10 SINE Alu -19 98 4 6 1541 569 153 5 32 chr5 125338783 125338969 -27198290 + CT-rich Low_complexity Low_complexity 1 181 0 6 1541 528 228 88 0 chr5 125338978 125339092 -27198167 - B1_Mm SINE Alu -23 124 1 6 1541 314 165 133 0 chr5 125339092 125339160 -27198099 + B3 SINE B2 30 125 -73 6 1541 2406 147 27 24 chr5 125339379 125339791 -27197468 + MTC LTR MaLR 1 413 -8 6 1541 252 257 131 62 chr5 125340540 125340685 -27196574 - L3 LINE CR1 -180 4309 4155 6 1541 610 172 123 15 chr5 125341687 125341817 -27195442 - B1_Mur1 SINE Alu -5 144 1 6 1541 29 47 0 0 chr5 125343627 125343670 -27193589 + GC_rich Low_complexity Low_complexity 1 43 0 6 1541 253 327 58 0 chr5 125345350 125345454 -27191805 - L2b LINE L2 -247 3128 3019 6 1541 23 0 0 0 chr5 125345738 125345761 -27191498 + AT_rich Low_complexity Low_complexity 1 23 0 6 1541 364 230 236 0 chr5 125345920 125346060 -27191199 + B3 SINE B2 44 216 0 6 1541 973 129 0 0 chr5 125347061 125347200 -27190059 - B1_Mur4 SINE Alu -2 148 10 6 1541 705 232 0 37 chr5 125347200 125347222 -27190037 - ID_B1 SINE B4 -2 222 68 6 1541 215 93 23 0 chr5 125347228 125347271 -27189988 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 6 1541 264 30 0 0 chr5 125348153 125348186 -27189073 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 6 1541 340 251 80 71 chr5 125348754 125348917 -27188342 - ID_B1 SINE B4 0 224 8 6 1541 413 286 20 0 chr5 125350453 125350551 -27186708 - RSINE1 SINE B4 -65 100 1 6 1541 265 236 159 19 chr5 125350926 125351023 -27186236 - ORR1E LTR MaLR -4 375 275 6 1541 451 273 159 12 chr5 125351034 125351197 -27186062 - ORR1E LTR MaLR -172 187 1 6 1541 229 271 68 41 chr5 125351416 125351489 -27185770 + LTR88c LTR Genie? 79 153 -709 6 1541 268 221 39 0 chr5 125353081 125353158 -27184101 + RMER17C LTR ERVK 195 274 -136 6 1541 231 125 0 0 chr5 125353935 125353975 -27183284 + (T)n Simple_repeat Simple_repeat 1 40 0 6 1541 1490 73 10 5 chr5 125353976 125354170 -27183089 - B2_Mm2 SINE B2 0 195 1 6 1541 3089 95 32 19 chr5 125355490 125355921 -27181338 - RLTR9B LTR ERVK 0 437 1 6 1541 245 228 141 58 chr5 125356560 125356681 -27180578 - Charlie1a DNA MER1_type -4 1451 1321 6 1541 407 265 112 0 chr5 125356696 125356794 -27180465 + RSINE1 SINE B4 1 109 -56 6 1541 279 0 0 0 chr5 125356807 125356838 -27180421 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1541 434 136 0 12 chr5 125356838 125356920 -27180339 + (TA)n Simple_repeat Simple_repeat 1 81 0 6 1541 510 117 266 0 chr5 125357013 125357107 -27180152 + PB1D9 SINE Alu 1 119 -1 6 1541 950 191 107 8 chr5 125359039 125359359 -27177900 - RLTR11A LTR ERVK 0 528 168 6 1541 1254 164 18 116 chr5 125363808 125364084 -27173175 - ORR1A3 LTR MaLR -77 249 1 6 1541 230 253 170 50 chr5 125364163 125364263 -27172996 + B4 SINE B4 2 113 -179 6 1541 320 319 36 36 chr5 125365970 125366110 -27171149 + MMSAT4 Satellite Satellite 28 167 -1 6 1541 230 231 0 19 chr5 125366148 125366201 -27171058 + MurSatRep1 Unknown Unknown 1746 1797 -340 6 1541 255 328 15 15 chr5 125366230 125366363 -27170896 + MMSAT4 Satellite Satellite 36 168 0 6 1541 303 325 0 16 chr5 125366548 125366676 -27170583 + MMSAT4 Satellite Satellite 18 143 -25 6 1541 356 217 14 0 chr5 125367661 125367730 -27169529 - L2a LINE L2 -1 3425 3356 6 1541 445 286 66 22 chr5 125368651 125368836 -27168423 + MIR3 SINE MIR 16 202 -6 6 1541 464 261 111 35 chr5 125369503 125369674 -27167585 + B3A SINE B2 1 184 -14 6 1541 23 0 0 0 chr5 125369685 125369708 -27167551 + AT_rich Low_complexity Low_complexity 1 23 0 6 1541 414 223 13 0 chr5 125370763 125370856 -27166403 + B4 SINE B4 2 96 -196 6 1541 441 84 0 0 chr5 125371587 125371658 -27165601 + (TC)n Simple_repeat Simple_repeat 1 71 0 6 1541 258 232 89 42 chr5 125372080 125372195 -27165064 + MIR SINE MIR 51 163 -99 6 1541 1224 74 0 0 chr5 125373022 125373170 -27164089 + B1_Mus1 SINE Alu 1 148 0 6 1541 321 197 0 0 chr5 125373194 125373260 -27163999 + GA-rich Low_complexity Low_complexity 4 69 0 6 1541 553 103 20 20 chr5 125373246 125373345 -27163914 + (GAAAA)n Simple_repeat Simple_repeat 5 103 0 6 1541 1181 92 116 0 chr5 125373355 125373528 -27163731 + B2_Mm2 SINE B2 2 194 -1 6 1541 595 156 16 0 chr5 125373528 125373650 -27163609 + GA-rich Low_complexity Low_complexity 1 124 0 6 1541 450 0 0 0 chr5 125374627 125374677 -27162582 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1541 616 93 235 10 chr5 125374788 125374886 -27162373 + B1_Mus1 SINE Alu 1 120 0 6 1541 255 61 0 0 chr5 125374886 125374919 -27162340 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1541 637 97 0 0 chr5 125374919 125375012 -27162247 - B1_Mus2 SINE Alu -13 134 42 6 1541 440 139 13 0 chr5 125375012 125375091 -27162168 + C-rich Low_complexity Low_complexity 6 85 0 6 1541 325 115 39 0 chr5 125375092 125375144 -27162115 - B1_Mur4 SINE Alu -94 56 3 6 1541 994 286 44 0 chr5 125375151 125375399 -27161860 - B4A SINE B4 -33 259 1 6 1541 309 263 10 59 chr5 125376240 125376341 -27160918 - B1F1 SINE Alu -51 98 3 6 1541 358 192 4 4 chr5 125376343 125376418 -27160841 - B3A SINE B2 -77 121 45 6 1541 339 176 0 0 chr5 125376844 125376935 -27160324 + C-rich Low_complexity Low_complexity 1 91 0 6 1541 243 88 0 0 chr5 125377872 125377906 -27159353 + (ATG)n Simple_repeat Simple_repeat 1 34 0 6 1541 294 361 16 56 chr5 125378203 125378329 -27158930 - B4A SINE B4 -170 122 2 6 1541 384 234 17 51 chr5 125378510 125378627 -27158632 - PB1D7 SINE Alu -7 113 1 7 1541 216 119 23 23 chr5 125378879 125378922 -27158337 + G-rich Low_complexity Low_complexity 2 44 0 7 1541 796 169 8 8 chr5 125378925 125379056 -27158203 + B1_Mus2 SINE Alu 16 146 -1 7 1541 210 105 0 0 chr5 125379058 125379096 -27158163 + (CAA)n Simple_repeat Simple_repeat 2 39 0 7 1541 295 294 103 14 chr5 125379254 125379399 -27157860 - L1ME2z LINE L1 -185 6259 6102 7 1541 682 264 6 6 chr5 125379410 125379566 -27157693 + RSINE1 SINE B4 4 159 -6 7 1541 1214 41 0 14 chr5 125379620 125379768 -27157491 + B1_Mus1 SINE Alu 2 147 -1 7 1541 1181 75 0 0 chr5 125379779 125379926 -27157333 + B1_Mm SINE Alu 1 147 0 7 1541 395 114 0 43 chr5 125379926 125379982 -27157277 + A-rich Low_complexity Low_complexity 11 63 0 7 1541 1268 41 0 0 chr5 125379982 125380128 -27157131 + B1_Mm SINE Alu 2 147 0 7 1541 395 114 0 43 chr5 125380128 125380152 -27157107 + A-rich Low_complexity Low_complexity 64 87 0 7 1541 195 265 0 20 chr5 125380587 125380637 -27156622 - L2b LINE L2 -20 3355 3307 7 1541 289 221 100 29 chr5 125381483 125381553 -27155706 - PB1D7 SINE Alu 0 120 46 7 1541 614 263 0 82 chr5 125381596 125381791 -27155468 - B3A SINE B2 -4 194 16 7 1541 436 226 118 0 chr5 125382493 125382586 -27154673 + RSINE1 SINE B4 40 143 -22 7 1541 426 315 0 9 chr5 125382955 125383064 -27154195 - PB1D7 SINE Alu 0 120 13 7 1541 1035 194 75 0 chr5 125383083 125383284 -27153975 - B3 SINE B2 0 216 1 7 1541 1255 91 43 0 chr5 125383293 125383479 -27153780 - B2_Mm2 SINE B2 -1 194 1 7 1541 219 107 0 0 chr5 125383634 125383662 -27153597 + B1_Mus1 SINE Alu 22 49 -99 7 1541 1159 68 0 20 chr5 125383703 125383853 -27153406 + B1_Mus1 SINE Alu 1 147 -1 7 1541 402 21 0 0 chr5 125383856 125383903 -27153356 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 1541 251 280 98 98 chr5 125384129 125384343 -27152916 - MLT1C LTR MaLR -186 281 68 7 1541 2191 168 55 91 chr5 125384348 125384873 -27152386 + RMER20A LTR ERVK 11 516 0 7 1541 1934 122 69 89 chr5 125385880 125386241 -27151018 + ORR1B1 LTR MaLR 41 394 0 7 1541 470 338 43 0 chr5 125386759 125386966 -27150293 - MER20 DNA MER1_type -3 216 1 7 1541 334 304 62 9 chr5 125387955 125388068 -27149191 - HAL1-3A_ME LINE L1 -456 2402 2284 7 1541 861 126 6 28 chr5 125388084 125388264 -27148995 + CT-rich Low_complexity Low_complexity 2 177 0 7 1541 604 323 46 30 chr5 125388342 125388687 -27148572 + ORR1E LTR MaLR 6 377 -2 7 1541 499 281 13 19 chr5 125389595 125389751 -27147508 - RSINE1 SINE B4 -8 157 3 7 1541 243 294 0 0 chr5 125389762 125389830 -27147429 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1541 645 215 34 127 chr5 125389865 125390220 -27147039 - ORR1C2 LTR MaLR -39 355 34 7 1541 226 139 0 0 chr5 125390208 125390244 -27147015 + B1_Mur2 SINE Alu 96 131 -18 7 1541 443 157 11 0 chr5 125390711 125390800 -27146459 + CT-rich Low_complexity Low_complexity 2 91 0 7 1541 330 266 49 21 chr5 125390810 125390979 -27146280 - B3A SINE B2 -17 178 2 7 1541 882 198 0 64 chr5 125391018 125391191 -27146068 - B3 SINE B2 -8 208 36 7 1541 204 188 31 15 chr5 125391359 125391424 -27145835 + CT-rich Low_complexity Low_complexity 2 67 0 7 1541 623 233 69 11 chr5 125391529 125391703 -27145556 - B4 SINE B4 -37 255 72 7 1541 634 229 28 0 chr5 125391697 125391841 -27145418 - B1F2 SINE Alu -1 148 1 7 1541 504 299 56 56 chr5 125391841 125391928 -27145331 - B4 SINE B4 -199 93 7 7 1541 207 0 0 0 chr5 125391942 125391965 -27145294 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1541 1090 71 0 0 chr5 125391978 125392119 -27145140 + B1_Mm SINE Alu 5 145 -2 7 1541 221 143 0 45 chr5 125392293 125392337 -27144922 + GA-rich Low_complexity Low_complexity 4 45 0 7 1541 369 0 0 0 chr5 125392607 125392648 -27144611 + (CCA)n Simple_repeat Simple_repeat 1 41 0 7 1541 21 0 0 0 chr5 125392738 125392759 -27144500 + GC_rich Low_complexity Low_complexity 1 21 0 7 1541 284 215 180 8 chr5 125392981 125393103 -27144156 + B1F SINE Alu 1 143 -6 7 1541 316 237 66 0 chr5 125393109 125393185 -27144074 + B4 SINE B4 1 81 -211 7 1541 489 293 8 0 chr5 125394218 125394341 -27142918 + RSINE1 SINE B4 7 130 -35 7 1541 380 123 31 0 chr5 125394452 125394517 -27142742 - B1_Mus1 SINE Alu -76 72 6 7 1541 180 111 0 0 chr5 125394517 125394544 -27142715 + (CCG)n Simple_repeat Simple_repeat 2 28 0 7 1541 280 208 169 0 chr5 125394595 125394672 -27142587 - B4A SINE B4 -202 90 1 7 1541 315 0 0 0 chr5 125395046 125395081 -27142178 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1541 407 199 62 90 chr5 125395178 125395322 -27141937 + B4A SINE B4 153 292 0 7 1541 401 202 11 27 chr5 125395326 125395509 -27141750 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1541 427 170 5 69 chr5 125395539 125395728 -27141531 + (CA)n Simple_repeat Simple_repeat 2 178 0 7 1541 282 197 26 13 chr5 125395745 125395899 -27141360 + (CA)n Simple_repeat Simple_repeat 2 157 0 7 1541 426 292 26 13 chr5 125396772 125396928 -27140331 - HAL1-2a_MD LINE L1 -522 2502 2345 7 1541 1153 47 134 6 chr5 125397462 125397634 -27139625 + B2_Mm2 SINE B2 1 194 -1 7 1541 739 225 134 28 chr5 125397922 125398169 -27139090 + B4A SINE B4 5 277 -15 7 1541 230 287 62 31 chr5 125398258 125398355 -27138904 + MER33 DNA MER1_type 69 168 -156 7 1541 423 257 78 39 chr5 125398410 125398564 -27138695 + RSINE1 SINE B4 6 165 0 7 1541 196 328 15 40 chr5 125398681 125398789 -27138470 + MIR SINE MIR 56 165 -103 7 1541 3602 134 131 89 chr5 125399126 125399955 -27137304 + RMER19B LTR ERVK 1 873 -29 7 1541 1232 98 22 0 chr5 125399955 125400139 -27137120 + B2_Mm1a SINE B2 2 189 -4 7 1541 3602 134 131 89 chr5 125400139 125400163 -27137096 + RMER19B LTR ERVK 874 890 -12 7 1541 786 158 30 0 chr5 125400688 125400821 -27136438 + B1_Mur1 SINE Alu 2 138 -11 7 1541 934 252 23 81 chr5 125401276 125401583 -27135676 + B4A SINE B4 3 291 -1 7 1541 1017 148 0 4 chr5 125401680 125401903 -27135356 + (CA)n Simple_repeat Simple_repeat 1 222 0 7 1541 684 202 3 17 chr5 125402248 125402555 -27134704 + (TG)n Simple_repeat Simple_repeat 1 302 0 7 1541 1078 231 71 4 chr5 125402560 125402829 -27134430 - B4A SINE B4 0 292 6 7 1541 282 276 150 39 chr5 125402924 125403018 -27134241 - CYRA11_Mm Unknown Y-chromosome -219 398 203 7 1541 512 136 144 9 chr5 125403018 125403129 -27134130 + URR1B DNA MER1_type 100 225 0 7 1541 282 276 150 39 chr5 125403129 125403158 -27134101 - CYRA11_Mm Unknown Y-chromosome -219 202 139 7 1541 207 0 0 0 chr5 125403941 125403964 -27133295 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1541 1087 59 0 0 chr5 125403964 125404099 -27133160 - B1_Mm SINE Alu -11 136 2 7 1541 21 36 0 0 chr5 125404251 125404279 -27132980 + AT_rich Low_complexity Low_complexity 1 28 0 7 1541 871 251 15 15 chr5 125404279 125404481 -27132778 - B3 SINE B2 -14 202 1 7 1541 1402 56 0 6 chr5 125404483 125404663 -27132596 - B2_Mm2 SINE B2 -15 180 2 7 1541 297 226 0 0 chr5 125404722 125404806 -27132453 + GA-rich Low_complexity Low_complexity 1 84 0 7 1541 344 261 11 11 chr5 125404806 125404895 -27132364 - B4A SINE B4 -18 274 186 7 1541 579 188 0 10 chr5 125405521 125405623 -27131636 - PB1D10 SINE Alu -9 108 8 7 1541 414 100 0 0 chr5 125405751 125405811 -27131448 + (TATG)n Simple_repeat Simple_repeat 4 63 0 7 1541 736 296 80 15 chr5 125405830 125406104 -27131155 - B4 SINE B4 0 292 1 7 1541 360 117 0 2 chr5 125406323 125406392 -27130867 + RLTR26 LTR ERVK 1 68 -821 7 1541 769 227 0 0 chr5 125406476 125406626 -27130633 - RSINE1 SINE B4 -15 150 1 7 1541 405 0 0 0 chr5 125407019 125407064 -27130195 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1541 399 56 0 0 chr5 125407357 125407411 -27129848 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1541 228 216 20 0 chr5 125407416 125407467 -27129792 - B1F SINE Alu -78 71 20 7 1541 1308 83 5 30 chr5 125407651 125407849 -27129410 + B2_Mm1a SINE B2 1 193 0 7 1541 211 116 0 65 chr5 125408660 125408706 -27128553 + G-rich Low_complexity Low_complexity 1 43 0 7 1541 420 289 84 7 chr5 125408847 125408990 -27128269 + MER96 DNA hAT 20 173 -2 7 1541 267 292 0 0 chr5 125409200 125409265 -27127994 - B4A SINE B4 -74 218 154 7 1541 265 234 0 144 chr5 125409281 125409406 -27127853 - MT2B2 LTR ERVL -299 285 179 7 1541 431 143 9 53 chr5 125409324 125409419 -27127840 - B1_Mus2 SINE Alu -21 99 6 7 1541 292 284 22 22 chr5 125409702 125409792 -27127467 - ORR1E LTR MaLR 0 379 290 7 1541 774 262 65 38 chr5 125409817 125410107 -27127152 - ORR1E LTR MaLR -60 299 2 7 1541 480 77 0 0 chr5 125410905 125410970 -27126289 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1541 700 256 116 22 chr5 125410970 125411202 -27126057 - B4A SINE B4 -23 269 16 7 1541 466 305 0 0 chr5 125412361 125412479 -27124780 + B1F1 SINE Alu 1 118 -31 7 1541 316 287 0 135 chr5 125412479 125412494 -27124765 + ID_B1 SINE B4 82 196 -28 7 1541 306 73 0 0 chr5 125412546 125412587 -27124672 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 7 1541 231 340 144 12 chr5 125412740 125413059 -27124200 - L1MD3 LINE L1 -204 7791 7431 7 1541 632 256 6 19 chr5 125414051 125414210 -27123049 - RSINE1 SINE B4 -8 157 1 7 1541 641 211 52 19 chr5 125414713 125414891 -27122368 + B3 SINE B2 3 186 -9 7 1541 350 290 52 30 chr5 125415548 125415683 -27121576 - ID_B1 SINE B4 -3 221 84 7 1541 217 154 38 19 chr5 125415721 125415774 -27121485 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 7 1541 1029 256 18 29 chr5 125416365 125416643 -27120616 + B4 SINE B4 11 285 -7 7 1541 198 0 0 0 chr5 125416797 125416819 -27120440 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1541 290 26 26 0 chr5 125417285 125417324 -27119935 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 8 1541 280 167 43 43 chr5 125417324 125417393 -27119866 - B1F SINE Alu -1 148 80 8 1541 5251 231 61 109 chr5 125417407 125417885 -27119374 - Lx7 LINE L1 -437 7259 6758 8 1541 770 109 339 0 chr5 125417885 125418050 -27119209 - URR1B DNA MER1_type -4 221 1 8 1541 5251 231 61 109 chr5 125418050 125418145 -27119114 - Lx7 LINE L1 -939 6757 6708 8 1541 1080 83 7 0 chr5 125418145 125418290 -27118969 - B1_Mus2 SINE Alu -1 146 1 8 1541 5251 231 61 109 chr5 125418290 125418461 -27118798 - Lx7 LINE L1 -989 6707 6544 8 1541 1651 156 279 27 chr5 125418461 125418479 -27118780 - RLTR31_Mm LTR ERVK 0 561 544 8 1541 225 0 0 0 chr5 125418479 125418504 -27118755 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1541 1651 156 279 27 chr5 125418504 125418933 -27118326 - RLTR31_Mm LTR ERVK -18 543 3 8 1541 5251 220 95 65 chr5 125418933 125420612 -27116647 - Lx7 LINE L1 -1153 6543 4865 8 1541 1206 41 0 0 chr5 125420775 125420922 -27116337 - B1_Mus1 SINE Alu 0 148 2 8 1541 388 325 26 0 chr5 125421983 125422100 -27115159 - B4A SINE B4 -25 267 148 8 1541 182 132 0 50 chr5 125422765 125422805 -27114454 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 8 1541 275 301 6 0 chr5 125422911 125423087 -27114172 + (TG)n Simple_repeat Simple_repeat 1 177 0 8 1541 208 255 0 0 chr5 125423089 125423136 -27114123 + (TATG)n Simple_repeat Simple_repeat 2 48 0 8 1541 253 108 11 43 chr5 125425035 125425091 -27112168 - ORR1D2 LTR MaLR -2 372 316 8 1541 285 256 0 8 chr5 125425090 125425172 -27112087 + B3A SINE B2 13 91 -104 8 1541 213 250 0 0 chr5 125425201 125425245 -27112014 - B3A SINE B2 -154 44 1 8 1541 206 305 60 60 chr5 125425337 125425487 -27111772 + MIRb SINE MIR 10 159 -109 8 1541 234 307 112 11 chr5 125425582 125425671 -27111588 + B4 SINE B4 185 282 -10 8 1541 495 107 0 0 chr5 125425699 125425774 -27111485 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 1541 352 273 78 29 chr5 125425789 125425891 -27111368 + PB1D10 SINE Alu 10 116 -1 8 1541 344 268 10 20 chr5 125426391 125426490 -27110769 + MLT1L LTR MaLR 193 290 -320 8 1541 1356 226 49 99 chr5 125426788 125427344 -27109915 - RLTR11A LTR ERVK 0 528 1 8 1541 839 181 41 6 chr5 125427665 125427837 -27109422 + ID_B1 SINE B4 40 217 -7 8 1541 458 260 117 0 chr5 125427982 125428136 -27109123 - MTD LTR MaLR 0 379 208 8 1541 7195 85 4 25 chr5 125428154 125429263 -27107996 + MusHAL1 LINE L1 1001 2085 -627 8 1541 189 107 0 0 chr5 125429595 125429623 -27107636 + (TGGA)n Simple_repeat Simple_repeat 3 30 0 8 1541 25 0 0 0 chr5 125429766 125429791 -27107468 + AT_rich Low_complexity Low_complexity 1 25 0 8 1541 1585 32 0 0 chr5 125429908 125430097 -27107162 + B2_Mm1a SINE B2 1 189 -4 8 1541 535 262 28 62 chr5 125430100 125430279 -27106980 - MTD LTR MaLR -240 179 7 8 1541 1114 48 14 0 chr5 125430470 125430615 -27106644 + B1_Mus1 SINE Alu 2 148 0 8 1541 257 259 0 12 chr5 125431856 125431938 -27105321 - ID4 SINE ID -1 82 2 8 1541 486 238 23 23 chr5 125431956 125432085 -27105174 - B1F1 SINE Alu 0 149 21 8 1541 578 246 0 48 chr5 125432169 125432314 -27104945 + RSINE1 SINE B4 15 152 -13 8 1541 1180 48 0 0 chr5 125432362 125432509 -27104750 + B1_Mm SINE Alu 1 147 0 8 1541 192 77 0 0 chr5 125432509 125432535 -27104724 + (A)n Simple_repeat Simple_repeat 1 26 0 8 1541 265 246 31 0 chr5 125432537 125432602 -27104657 + ID SINE ID 2 68 -156 8 1541 255 284 27 13 chr5 125432542 125432617 -27104642 + BC1_Mm scRNA scRNA 8 83 -69 8 1541 498 203 0 0 chr5 125432657 125432775 -27104484 + CT-rich Low_complexity Low_complexity 1 118 0 8 1541 188 167 24 0 chr5 125432813 125432855 -27104404 + MIRc SINE MIR 78 120 -148 8 1541 331 293 187 69 chr5 125433100 125433346 -27103913 + B4A SINE B4 4 278 -14 8 1541 615 128 18 27 chr5 125433576 125433688 -27103571 + URR1B DNA MER1_type 91 201 -24 8 1541 221 262 15 15 chr5 125434074 125434140 -27103119 + GA-rich Low_complexity Low_complexity 3 68 0 8 1541 526 261 0 9 chr5 125434422 125434538 -27102721 + RSINE1 SINE B4 13 127 -38 8 1541 441 0 0 0 chr5 125434543 125434592 -27102667 + (TC)n Simple_repeat Simple_repeat 1 49 0 8 1541 360 0 0 0 chr5 125434592 125434631 -27102628 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1541 271 342 105 47 chr5 125434930 125435338 -27101921 + L1M6 LINE L1 634 1065 -5431 8 192 323 329 67 75 chr5 125435779 125436051 -27101208 + MT2A LTR ERVL 169 436 -97 8 1542 298 317 129 18 chr5 125436027 125436197 -27101062 - MTE2a LTR MaLR -110 269 81 8 1542 423 87 0 0 chr5 125436200 125436269 -27100990 + (TC)n Simple_repeat Simple_repeat 2 70 0 8 1542 180 0 0 0 chr5 125436269 125436289 -27100970 + (CA)n Simple_repeat Simple_repeat 1 20 0 8 1542 207 0 0 0 chr5 125436544 125436567 -27100692 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 8 1542 494 219 17 17 chr5 125437436 125437552 -27099707 + PB1D10 SINE Alu 1 116 -1 8 1542 503 189 18 0 chr5 125437553 125437664 -27099595 + GA-rich Low_complexity Low_complexity 4 116 0 8 1542 192 77 0 0 chr5 125437668 125437694 -27099565 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 1542 248 260 25 25 chr5 125437883 125437962 -27099297 + ID4_ SINE ID 2 80 -3 8 1542 780 166 223 0 chr5 125438915 125439090 -27098169 - B3 SINE B2 -1 215 2 8 1542 711 216 24 82 chr5 125439605 125439812 -27097447 - B3A SINE B2 -2 196 2 8 1542 545 242 41 77 chr5 125439876 125440046 -27097213 + RSINE1 SINE B4 2 165 0 8 1542 196 270 40 26 chr5 125440330 125440406 -27096853 - MIRm SINE MIR -86 190 114 8 1542 214 364 0 0 chr5 125440816 125440882 -27096377 + L2b LINE L2 3310 3375 0 8 1542 341 270 111 17 chr5 125441321 125441438 -27095821 + MIR SINE MIR 48 175 -87 8 1542 427 239 23 0 chr5 125441483 125441590 -27095669 + B1F1 SINE Alu 2 118 -2 8 1542 468 260 0 28 chr5 125441606 125441713 -27095546 + RSINE1 SINE B4 17 120 -45 8 1542 438 20 0 0 chr5 125441726 125441777 -27095482 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1542 1039 150 89 33 chr5 125441850 125442064 -27095195 - URR1A DNA MER1_type 0 226 1 8 1542 606 118 0 0 chr5 125442360 125442453 -27094806 + (T)n Simple_repeat Simple_repeat 1 93 0 8 1542 1077 75 0 7 chr5 125442453 125442601 -27094658 - B1_Mus2 SINE Alu 0 147 1 8 1542 339 300 60 117 chr5 125442782 125443065 -27094194 - ORR1E LTR MaLR -17 342 76 8 1542 212 208 0 36 chr5 125445116 125445154 -27092105 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 8 1542 285 29 0 0 chr5 125445154 125445188 -27092071 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 8 1542 267 31 0 0 chr5 125445188 125445220 -27092039 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1542 513 0 0 0 chr5 125445221 125445278 -27091981 + (TA)n Simple_repeat Simple_repeat 2 58 0 8 1542 212 208 0 36 chr5 125445278 125445291 -27091968 + (TCCA)n Simple_repeat Simple_repeat 4 16 0 8 1542 432 238 12 6 chr5 125445303 125445472 -27091787 + (TCCA)n Simple_repeat Simple_repeat 3 172 0 8 1542 757 190 0 7 chr5 125445490 125445633 -27091626 - B1_Mus2 SINE Alu 0 147 6 8 1542 299 252 182 16 chr5 125445639 125445760 -27091499 - Cheshire DNA MER1_type -83 2337 2197 8 1542 696 213 49 7 chr5 125445801 125445943 -27091316 - RSINE1 SINE B4 -15 150 3 8 1542 183 114 0 0 chr5 125447020 125447055 -27090204 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1542 225 289 89 0 chr5 125447156 125447246 -27090013 + MER119 DNA MER1_type 241 338 -245 8 1542 281 26 26 0 chr5 125448122 125448160 -27089099 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1542 1301 27 0 0 chr5 125448162 125448309 -27088950 - B1_Mus1 SINE Alu 0 148 2 8 1542 1141 109 0 0 chr5 125448313 125448460 -27088799 - B1_Mur1 SINE Alu 0 149 3 8 1542 251 356 59 0 chr5 125448461 125448596 -27088663 + L1M2 LINE L1 5077 5219 -924 8 1542 771 192 26 31 chr5 125448842 125449040 -27088219 + B3 SINE B2 1 195 0 8 1542 23 0 0 0 chr5 125449482 125449505 -27087754 + GC_rich Low_complexity Low_complexity 1 23 0 8 1542 696 251 7 35 chr5 125452046 125452265 -27084994 - B3A SINE B2 0 216 9 8 1542 254 202 214 0 chr5 125452622 125452706 -27084553 + B4 SINE B4 189 290 -2 8 1542 1206 43 0 0 chr5 125452792 125452932 -27084327 + B1_Mm SINE Alu 1 140 -7 8 1542 273 312 128 39 chr5 125453445 125453702 -27083557 - L2b LINE L2 -163 3212 2933 8 1542 847 230 0 6 chr5 125453960 125454135 -27083124 - B4A SINE B4 -4 288 115 8 1542 432 0 0 0 chr5 125454147 125454195 -27083064 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1542 519 212 133 22 chr5 125455077 125455212 -27082047 - B1_Mur4 SINE Alu 0 150 1 8 1542 456 339 107 36 chr5 125455359 125455843 -27081416 - L1ME1 LINE L1 -212 5967 5448 8 1542 1869 207 16 5 chr5 125455843 125456217 -27081042 - MTEb LTR MaLR 0 379 2 8 1542 456 339 107 36 chr5 125456217 125456237 -27081022 - L1ME1 LINE L1 -732 5447 5427 8 1542 271 290 49 11 chr5 125456628 125456750 -27080509 - MIRm SINE MIR -99 177 48 8 1542 200 411 28 18 chr5 125456775 125456884 -27080375 - L2b LINE L2 -1 3374 3265 8 1542 426 39 0 0 chr5 125457196 125457248 -27080011 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1542 1096 192 58 10 chr5 125457320 125457525 -27079734 - B3 SINE B2 -1 215 1 8 1542 244 194 224 0 chr5 125458598 125458665 -27078594 + PB1D7 SINE Alu 37 118 -2 8 1542 1340 219 61 3 chr5 125458729 125459040 -27078219 - RLTR14 LTR ERV1 0 382 54 8 1542 192 77 0 0 chr5 125459321 125459347 -27077912 + (TCCCC)n Simple_repeat Simple_repeat 2 27 0 8 1542 333 0 0 0 chr5 125459552 125459589 -27077670 + (TA)n Simple_repeat Simple_repeat 1 37 0 8 1542 180 0 0 0 chr5 125460501 125460521 -27076738 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1542 1234 54 0 0 chr5 125461320 125461467 -27075792 - B1_Mus1 SINE Alu -1 147 1 9 1542 24 65 0 16 chr5 125461766 125461794 -27075465 + AT_rich Low_complexity Low_complexity 1 28 0 9 1542 1129 113 0 0 chr5 125461794 125461944 -27075315 - B1_Mur4 SINE Alu 0 150 1 9 1542 24 65 0 16 chr5 125461944 125461978 -27075281 + AT_rich Low_complexity Low_complexity 1 34 0 9 1542 207 0 0 0 chr5 125462954 125462977 -27074282 + (CCCTG)n Simple_repeat Simple_repeat 5 27 0 9 1542 422 295 144 21 chr5 125463019 125463146 -27074113 - B4A SINE B4 -79 213 89 9 1542 297 0 0 0 chr5 125463146 125463179 -27074080 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1542 422 295 144 21 chr5 125463179 125463238 -27074021 - B4A SINE B4 -204 88 6 9 1542 5093 131 42 97 chr5 125463571 125463782 -27073477 + RMER19B LTR ERVK 1 157 -745 9 1542 1148 42 35 0 chr5 125463782 125463925 -27073334 - B1_Mus1 SINE Alu 0 148 1 9 1542 5093 131 42 97 chr5 125463925 125464668 -27072591 + RMER19B LTR ERVK 158 902 0 9 1542 416 257 18 27 chr5 125465084 125465196 -27072063 - PB1D9 SINE Alu -9 111 1 9 1542 198 0 0 0 chr5 125465212 125465234 -27072025 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 9 1542 288 0 0 0 chr5 125466040 125466072 -27071187 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1542 871 144 242 28 chr5 125466510 125466688 -27070571 + B3 SINE B2 1 216 0 9 1542 544 299 113 5 chr5 125466714 125466899 -27070360 - B3 SINE B2 -10 206 2 9 1542 222 118 0 0 chr5 125466907 125466941 -27070318 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 9 1542 1287 106 37 11 chr5 125466941 125467131 -27070128 - B2_Mm2 SINE B2 0 195 1 9 1542 238 299 29 15 chr5 125467134 125467202 -27070057 + Charlie4 DNA MER1_type 1880 1948 -13 9 1542 830 322 64 20 chr5 125467249 125467591 -27069668 + ORR1E LTR MaLR 3 359 0 9 1542 446 208 160 0 chr5 125467855 125467961 -27069298 + B4A SINE B4 1 123 -169 9 1542 290 0 75 0 chr5 125468001 125468041 -27069218 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 9 1542 264 30 0 0 chr5 125468431 125468464 -27068795 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1542 3085 72 31 0 chr5 125468995 125469381 -27067878 + MTB LTR MaLR 1 398 -2 9 1542 230 223 0 55 chr5 125469456 125469565 -27067694 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 9 1542 518 229 0 18 chr5 125469582 125469751 -27067508 + (TCCA)n Simple_repeat Simple_repeat 3 168 0 9 1542 328 222 49 0 chr5 125470522 125470603 -27066656 - MIR SINE MIR -87 175 91 9 1542 295 319 0 11 chr5 125470729 125470821 -27066438 - MIRb SINE MIR -125 143 53 9 1542 249 318 135 50 chr5 125470844 125471064 -27066195 - L1MC2 LINE L1 -2 6342 6110 9 1542 756 169 27 47 chr5 125471064 125471080 -27066179 - B1_Mus1 SINE Alu -2 146 136 9 1542 279 0 0 0 chr5 125471080 125471111 -27066148 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 9 1542 756 169 27 47 chr5 125471111 125471243 -27066016 - B1_Mus1 SINE Alu -13 135 1 9 1542 249 318 135 50 chr5 125471243 125471400 -27065859 - L1MC2 LINE L1 -235 6109 5934 9 1542 302 257 9 106 chr5 125471966 125472020 -27065239 + B4 SINE B4 43 97 -195 9 1542 1230 68 0 0 chr5 125472020 125472168 -27065091 + B1_Mus1 SINE Alu 1 148 0 9 1542 243 0 0 0 chr5 125472170 125472197 -27065062 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1542 302 257 9 106 chr5 125472197 125472252 -27065007 + B4 SINE B4 98 144 -148 9 1542 246 283 59 75 chr5 125472331 125472518 -27064741 - RLTR21 LTR ERVK -313 1259 1076 9 1542 331 211 10 10 chr5 125473619 125473715 -27063544 + CT-rich Low_complexity Low_complexity 1 96 0 9 1542 421 159 67 11 chr5 125473753 125473842 -27063417 - ID_B1 SINE B4 0 224 131 9 1542 1104 76 7 7 chr5 125474923 125475069 -27062190 + B1_Mm SINE Alu 2 147 0 9 1542 1132 81 0 13 chr5 125475098 125475248 -27062011 + B1_Mus1 SINE Alu 1 148 0 9 1542 692 244 7 0 chr5 125475278 125475573 -27061686 + (TCCA)n Simple_repeat Simple_repeat 1 297 0 9 1542 271 322 0 22 chr5 125475574 125475663 -27061596 + (CCCA)n Simple_repeat Simple_repeat 1 87 0 9 1542 219 289 0 0 chr5 125475812 125475895 -27061364 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 9 1542 534 238 0 0 chr5 125475936 125476096 -27061163 + (TCCA)n Simple_repeat Simple_repeat 1 160 0 9 1542 377 287 42 11 chr5 125476533 125476681 -27060578 + B1F1 SINE Alu 1 147 0 9 1542 632 200 96 7 chr5 125476683 125476819 -27060440 + B1_Mur2 SINE Alu 1 148 -1 9 1542 182 0 107 0 chr5 125477001 125477029 -27060230 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 9 1542 924 33 17 0 chr5 125477029 125477149 -27060110 - B1_Mus1 SINE Alu 0 148 27 9 1542 436 211 101 0 chr5 125477563 125477672 -27059587 - ID_B1 SINE B4 -23 201 82 9 1542 566 212 24 0 chr5 125478941 125479106 -27058153 + (TA)n Simple_repeat Simple_repeat 2 170 0 9 1542 1882 156 83 16 chr5 125479106 125479478 -27057781 + MTD LTR MaLR 22 418 -1 9 1542 256 336 0 9 chr5 125479479 125479590 -27057669 + (TG)n Simple_repeat Simple_repeat 2 111 0 9 1542 1030 179 60 32 chr5 125479712 125479992 -27057267 + MTC LTR MaLR 1 421 0 9 1542 289 211 0 0 chr5 125480621 125480678 -27056581 + MIRc SINE MIR 82 138 -130 9 1542 342 0 0 0 chr5 125480930 125480968 -27056291 + (TC)n Simple_repeat Simple_repeat 1 38 0 9 1542 333 0 0 0 chr5 125480968 125481004 -27056255 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1542 648 220 50 55 chr5 125481773 125481975 -27055284 - B3 SINE B2 -5 211 11 9 1542 711 153 17 8 chr5 125482022 125482141 -27055118 - PB1D9 SINE Alu 0 120 1 9 1542 715 184 92 37 chr5 125482976 125483140 -27054119 + URR1B DNA MER1_type 1 173 -52 9 1542 231 258 52 31 chr5 125483212 125483308 -27053951 + MIR SINE MIR 91 188 -74 9 1542 213 128 62 21 chr5 125483735 125483783 -27053476 + G-rich Low_complexity Low_complexity 2 51 0 9 1542 248 319 52 31 chr5 125484676 125484773 -27052486 - MER5B DNA MER1_type -70 108 10 9 1542 193 310 42 0 chr5 125485275 125485346 -27051913 - MIRm SINE MIR -119 157 84 9 1542 288 53 0 0 chr5 125486182 125486220 -27051039 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1542 822 198 53 61 chr5 125486921 125487269 -27049990 - RMER17C LTR ERVK 0 410 14 9 1542 279 284 14 0 chr5 125487273 125487347 -27049912 + (TGGA)n Simple_repeat Simple_repeat 2 76 0 9 1542 420 263 0 0 chr5 125488339 125488434 -27048825 + PB1D7 SINE Alu 26 120 0 9 1542 726 223 72 0 chr5 125489209 125489375 -27047884 - B3 SINE B2 -38 178 1 9 1542 496 266 136 0 chr5 125490070 125490239 -27047020 - ID_B1 SINE B4 -17 207 16 9 1542 743 112 0 0 chr5 125491449 125491556 -27045703 - B2_Mm2 SINE B2 -88 107 1 9 1542 895 176 7 13 chr5 125493581 125493731 -27043528 - B1_Mur2 SINE Alu 0 149 1 9 1542 271 232 0 18 chr5 125496062 125496119 -27041140 + MT2A LTR ERVL 291 346 -187 9 1542 597 178 232 39 chr5 125496268 125496449 -27040810 + B3 SINE B2 1 216 0 9 1542 377 200 21 0 chr5 125496488 125496583 -27040676 + (CATATA)n Simple_repeat Simple_repeat 2 98 0 9 1542 1283 150 60 14 chr5 125496616 125496832 -27040427 + URR1A DNA MER1_type 1 226 0 9 1542 186 189 0 0 chr5 125498384 125498421 -27038838 + (CGGA)n Simple_repeat Simple_repeat 2 38 0 9 1542 185 94 31 0 chr5 125500148 125500180 -27037079 + (CGGG)n Simple_repeat Simple_repeat 1 33 0 1 1542 315 92 46 0 chr5 125500474 125500539 -27036720 + (GA)n Simple_repeat Simple_repeat 1 68 0 2 1542 531 112 0 0 chr5 125501212 125501292 -27035967 + (TC)n Simple_repeat Simple_repeat 1 80 0 3 1542 239 264 11 115 chr5 125501392 125501509 -27035750 + B1F SINE Alu 41 143 -6 4 1542 375 121 0 0 chr5 125502020 125502078 -27035181 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1542 395 202 17 84 chr5 125504824 125504943 -27032316 - PB1D10 SINE Alu 0 117 7 6 1542 227 235 29 5 chr5 125505099 125505180 -27032079 + MIRm SINE MIR 93 178 -90 7 1542 207 204 0 20 chr5 125506610 125506660 -27030599 + CT-rich Low_complexity Low_complexity 2 50 0 8 1542 318 180 0 0 chr5 125506801 125506862 -27030397 + A-rich Low_complexity Low_complexity 1 61 0 9 1542 271 234 36 0 chr5 125508167 125508278 -27028981 + (TCCA)n Simple_repeat Simple_repeat 2 116 0 1 1542 315 277 16 33 chr5 125508306 125508500 -27028759 + (TCCA)n Simple_repeat Simple_repeat 1 190 0 1 1542 549 158 0 0 chr5 125508562 125508663 -27028596 + (TCCA)n Simple_repeat Simple_repeat 2 102 0 1 1542 237 347 20 53 chr5 125509927 125509963 -27027296 - B1_Mur2 SINE Alu -1 148 82 1 1542 312 216 40 26 chr5 125509963 125510039 -27027220 - ID_B1 SINE B4 -4 220 144 1 1542 237 347 20 53 chr5 125510039 125510079 -27027180 - B1_Mur2 SINE Alu -1 81 2 1 1542 258 260 71 115 chr5 125511942 125512055 -27025204 - RSINE1 SINE B4 0 165 58 1 1542 455 252 94 75 chr5 125512062 125512221 -27025038 - B4A SINE B4 -128 164 3 1 1542 329 283 29 98 chr5 125513218 125513320 -27023939 - PB1D10 SINE Alu -25 124 30 1 1542 219 303 37 75 chr5 125514055 125514162 -27023097 + MIRc SINE MIR 77 179 -89 1 1542 260 269 102 51 chr5 125516720 125516818 -27020441 - PB1D10 SINE Alu -3 114 12 1 1542 220 270 16 0 chr5 125518010 125518073 -27019186 - MIR SINE MIR -55 153 90 1 1542 194 347 40 0 chr5 125518506 125518581 -27018678 + L2c LINE L2 2727 2804 -615 1 1542 234 255 43 53 chr5 125518711 125518837 -27018422 + L2c LINE L2 3000 3127 -260 1 1542 245 75 25 0 chr5 125521936 125521976 -27015283 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1542 594 137 256 0 chr5 125524306 125524423 -27012836 - B1_Mus2 SINE Alu 0 147 1 2 1542 411 240 19 29 chr5 125524518 125524621 -27012638 + B1F1 SINE Alu 2 103 -46 2 1542 318 229 147 108 chr5 125525275 125525432 -27011827 + B2_Mm2 SINE B2 2 164 -31 2 1542 187 21 19 96 chr5 125525999 125526051 -27011208 + (TGGGGG)n Simple_repeat Simple_repeat 1 48 0 2 1542 254 314 69 0 chr5 125527508 125527610 -27009649 + MLT1C LTR MaLR 156 264 -203 2 1542 1175 184 155 54 chr5 125527844 125528160 -27009099 + ORR1C2 LTR MaLR 37 384 0 2 1542 196 227 103 29 chr5 125529233 125529301 -27007958 + MIRb SINE MIR 115 187 -81 2 1542 315 0 0 0 chr5 125529435 125529470 -27007789 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1542 214 233 70 37 chr5 125533053 125533203 -27004056 + L2b LINE L2 2925 3082 -337 2 1542 345 170 78 16 chr5 125533999 125534089 -27003170 - PB1D10 SINE Alu -2 125 25 3 1542 403 281 24 16 chr5 125534808 125534942 -27002317 - MIR SINE MIR -83 185 45 3 1542 31 0 0 0 chr5 125538786 125538817 -26998442 + GC_rich Low_complexity Low_complexity 1 31 0 3 1542 208 135 0 0 chr5 125538967 125539004 -26998255 + (CCCG)n Simple_repeat Simple_repeat 3 39 0 3 1542 301 315 35 26 chr5 125541939 125542053 -26995206 + MIRm SINE MIR 36 150 -118 3 1542 313 257 14 0 chr5 125542656 125542726 -26994533 + B1_Mus2 SINE Alu 7 77 -70 3 1542 509 93 0 0 chr5 125542731 125542806 -26994453 + B1_Mus1 SINE Alu 1 75 -73 3 1542 605 147 0 9 chr5 125542806 125542916 -26994343 + GA-rich Low_complexity Low_complexity 2 110 0 3 1542 230 301 122 34 chr5 125542920 125543157 -26994102 + MLT1C LTR MaLR 171 428 -39 3 1542 495 0 0 0 chr5 125543799 125543854 -26993405 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 1542 587 232 0 40 chr5 125544425 125544573 -26992686 - ID_B1 SINE B4 -2 222 81 4 1542 241 299 12 109 chr5 125544427 125544592 -26992667 + YREP_Mm Unknown Unknown 181 329 -1483 4 1542 245 143 0 0 chr5 125545112 125545147 -26992112 + (CGGGGG)n Simple_repeat Simple_repeat 3 37 0 4 1542 229 218 50 9 chr5 125545436 125545496 -26991763 - MIRb SINE MIR -102 166 99 4 1542 264 30 0 0 chr5 125546418 125546451 -26990808 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1542 920 138 192 21 chr5 125546672 125546865 -26990394 + URR1A DNA MER1_type 1 226 0 4 1542 302 158 0 38 chr5 125549313 125549392 -26987867 + CT-rich Low_complexity Low_complexity 6 81 0 4 1542 327 49 0 0 chr5 125549408 125549449 -26987810 + (CTG)n Simple_repeat Simple_repeat 2 42 0 4 1542 423 0 0 0 chr5 125549670 125549717 -26987542 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1542 368 279 0 103 chr5 125550728 125550844 -26986415 + PB1D9 SINE Alu 9 112 -8 4 1542 309 320 0 0 chr5 125550972 125551050 -26986209 - MER58A DNA MER1_type -120 104 27 5 1542 360 0 0 0 chr5 125551183 125551223 -26986036 + (CACG)n Simple_repeat Simple_repeat 2 41 0 5 1542 270 299 179 0 chr5 125551479 125551613 -26985646 - MIR SINE MIR -42 220 63 5 1542 1639 158 73 21 chr5 125551823 125552152 -26985107 + ORR1B1 LTR MaLR 41 386 -8 5 1542 609 203 0 182 chr5 125552688 125552869 -26984390 - B1_Mur1 SINE Alu 0 149 2 5 1542 269 330 0 11 chr5 125553211 125553306 -26983953 - BC1_Mm scRNA scRNA -58 94 1 5 1542 689 184 44 0 chr5 125553354 125553490 -26983769 + MTD LTR MaLR 1 142 -277 5 1542 351 0 0 0 chr5 125553507 125553546 -26983713 + (TCTCCC)n Simple_repeat Simple_repeat 5 43 0 5 1542 420 20 0 0 chr5 125553546 125553594 -26983665 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1542 220 255 19 67 chr5 125554850 125554905 -26982354 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 5 1542 342 0 0 0 chr5 125554905 125554943 -26982316 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1542 220 255 19 67 chr5 125554943 125554992 -26982267 + (CAGAGA)n Simple_repeat Simple_repeat 5 54 0 6 1542 1067 264 85 17 chr5 125557245 125557538 -26979721 + ORR1D2 LTR MaLR 58 370 0 6 1542 487 147 2 36 chr5 125557565 125557675 -26979584 + B1_Mus2 SINE Alu 43 148 -1 6 1542 439 252 83 7 chr5 125557675 125557819 -26979440 + HAL1-2a_MD LINE L1 2336 2490 -534 6 1542 844 261 131 12 chr5 125558190 125558434 -26978825 - B4 SINE B4 0 292 20 6 1542 239 226 19 0 chr5 125558731 125558784 -26978475 - MER58A DNA MER1_type -140 84 31 5 1542 629 228 158 18 chr5 125558964 125559129 -26978130 - B3 SINE B2 -27 189 2 6 1542 256 330 43 6 chr5 125559671 125559822 -26977437 + MIRb SINE MIR 9 164 -112 6 1542 213 154 0 0 chr5 125561904 125561943 -26975316 + (CCCGG)n Simple_repeat Simple_repeat 4 42 0 6 1542 403 244 133 30 chr5 125562636 125562771 -26974488 + B1F1 SINE Alu 1 149 0 6 1542 253 337 10 10 chr5 125562914 125563010 -26974249 + PB1D10 SINE Alu 1 96 -21 7 1542 499 238 167 0 chr5 125563050 125563176 -26974083 + B1F SINE Alu 2 148 -1 7 1542 263 339 78 62 chr5 125563280 125563472 -26973787 + MER2 DNA MER2_type 97 291 -54 7 1542 181 241 0 49 chr5 125563570 125563631 -26973628 - MIR SINE MIR -98 164 107 7 1542 463 226 9 19 chr5 125564730 125564838 -26972421 - PB1D9 SINE Alu -7 113 7 7 1543 333 321 36 0 chr5 125570483 125570620 -26966639 + MIR SINE MIR 29 170 -92 7 1543 210 139 0 0 chr5 125570982 125571018 -26966241 + (CCCCCA)n Simple_repeat Simple_repeat 6 41 0 7 1543 279 299 0 49 chr5 125572482 125572605 -26964654 + GA-rich Low_complexity Low_complexity 5 121 0 7 1543 376 290 70 58 chr5 125573051 125573223 -26964036 + ID_B1 SINE B4 10 183 -41 7 1543 229 255 20 0 chr5 125573223 125573274 -26963985 + G-rich Low_complexity Low_complexity 4 55 0 7 1543 199 296 0 0 chr5 125573681 125573725 -26963534 + MIRc SINE MIR 82 125 -143 8 1543 209 295 51 0 chr5 125574428 125574506 -26962753 + L2a LINE L2 3344 3425 -1 8 1543 204 214 0 51 chr5 125574778 125574837 -26962422 - L3 LINE CR1 -109 4380 4325 8 1543 212 211 17 17 chr5 125576026 125576084 -26961175 + L2c LINE L2 3017 3074 -313 8 1543 375 292 9 9 chr5 125576554 125576661 -26960598 - PB1D10 SINE Alu -8 109 3 8 1543 447 167 0 0 chr5 125577171 125577261 -26959998 + (TGAA)n Simple_repeat Simple_repeat 1 90 0 8 1543 183 350 0 16 chr5 125579922 125579983 -26957276 + MIR SINE MIR 113 172 -90 8 1543 769 255 178 48 chr5 125580802 125581175 -26956084 + MTD LTR MaLR 18 406 -15 8 1543 591 40 0 0 chr5 125581567 125581641 -26955618 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 1543 315 316 70 58 chr5 125581799 125582111 -26955148 + L1MB5 LINE L1 5624 5939 -235 8 1543 256 315 15 23 chr5 125585939 125586064 -26951195 + MIR SINE MIR 44 168 -100 9 1543 200 290 116 21 chr5 125586205 125586300 -26950959 + MIR SINE MIR 40 143 -65 9 1543 427 294 44 48 chr5 125587031 125587359 -26949900 + HAL1-2a_MD LINE L1 2292 2507 -517 9 1543 380 237 24 90 chr5 125587416 125587583 -26949676 + HAL1-2a_MD LINE L1 2350 2505 -519 9 1543 775 238 5 47 chr5 125588722 125588912 -26948347 + B3A SINE B2 6 187 -11 9 1543 655 167 76 45 chr5 125588934 125589066 -26948193 + B1_Mur4 SINE Alu 2 137 -13 9 1543 956 122 0 39 chr5 125589100 125589254 -26948005 + B1_Mus1 SINE Alu 1 148 0 9 1543 28 29 0 0 chr5 125589354 125589389 -26947870 + AT_rich Low_complexity Low_complexity 1 35 0 9 1543 633 295 58 6 chr5 125589394 125589568 -26947691 - B3A SINE B2 -8 190 8 9 1543 30 27 0 0 chr5 125589574 125589611 -26947648 + AT_rich Low_complexity Low_complexity 1 37 0 9 1543 474 132 0 0 chr5 125589615 125589691 -26947568 + (TA)n Simple_repeat Simple_repeat 1 76 0 1 1543 324 0 0 0 chr5 125590151 125590187 -26947072 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1543 224 221 154 13 chr5 125590840 125590918 -26946341 - BC1_Mm scRNA scRNA -62 90 2 1 1543 595 277 69 35 chr5 125590923 125591125 -26946134 - B3 SINE B2 -1 215 7 1 1543 238 344 34 65 chr5 125591355 125591600 -26945659 + MIR SINE MIR 8 256 -20 1 1543 219 309 44 0 chr5 125592501 125592569 -26944690 + L4 LINE RTE 509 579 -1450 1 1543 472 167 22 0 chr5 125592809 125592947 -26944312 + (CAGT)n Simple_repeat Simple_repeat 3 143 0 1 1543 200 300 0 11 chr5 125593685 125593776 -26943483 + (CAGAGA)n Simple_repeat Simple_repeat 2 91 0 1 1543 297 0 0 0 chr5 125593783 125593816 -26943443 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1543 2368 143 14 26 chr5 125593816 125594238 -26943021 + MTC LTR MaLR 5 421 0 1 1543 5190 174 129 35 chr5 125594238 125594285 -26942974 + MTC-int LTR MaLR 1 47 -1211 1 1543 288 0 0 0 chr5 125594285 125594317 -26942942 + (TTG)n Simple_repeat Simple_repeat 1 32 0 1 1543 5190 174 129 35 chr5 125594317 125595309 -26941950 + MTC-int LTR MaLR 48 1116 -142 1 1543 1472 60 16 0 chr5 125595309 125595491 -26941768 - B2_Mm2 SINE B2 -7 188 4 1 1543 5190 174 129 35 chr5 125595491 125595600 -26941659 + MTC-int LTR MaLR 1117 1257 -1 1 1543 1552 118 328 37 chr5 125595600 125595926 -26941333 + MTC LTR MaLR 1 421 0 1 1543 207 250 35 18 chr5 125596673 125596730 -26940529 + (TGGA)n Simple_repeat Simple_repeat 2 59 0 1 1543 276 336 20 5 chr5 125598009 125598153 -26939106 + B1F SINE Alu 1 145 -2 1 1543 192 77 0 0 chr5 125598161 125598187 -26939072 + (CATA)n Simple_repeat Simple_repeat 3 28 0 1 1543 306 283 66 0 chr5 125599378 125599484 -26937775 + MER5A1 DNA MER1_type 52 164 -2 1 1543 668 267 34 68 chr5 125601211 125601416 -26935843 - B3A SINE B2 0 198 1 1 1543 864 68 306 0 chr5 125603021 125603168 -26934091 + B2_Mm1t SINE B2 2 193 0 1 1543 182 333 0 0 chr5 125604111 125604156 -26933103 - MIR SINE MIR -100 162 118 1 1543 379 295 9 28 chr5 125604925 125605033 -26932226 - PB1D10 SINE Alu -11 106 1 1 1543 333 68 0 0 chr5 125606841 125606885 -26930374 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1543 267 306 136 1 chr5 125606999 125607112 -26930147 + PB1D10 SINE Alu 1 120 -7 1 1543 948 128 0 57 chr5 125607114 125607272 -26929987 + B1_Mur3 SINE Alu 1 149 0 1 1543 219 232 0 0 chr5 125607281 125607337 -26929922 + GA-rich Low_complexity Low_complexity 3 58 0 1 1543 250 200 35 35 chr5 125607337 125607394 -26929865 + ZP3AR Satellite Satellite 38 94 -118 1 1543 223 260 53 30 chr5 125607345 125607402 -26929857 + BC1_Mm scRNA scRNA 2 61 -91 1 1543 313 224 29 15 chr5 125607402 125607470 -26929789 + ID4 SINE ID 2 70 -13 1 1543 223 260 53 30 chr5 125607470 125607505 -26929754 + BC1_Mm scRNA scRNA 62 94 -58 1 1543 610 179 53 9 chr5 125607505 125607618 -26929641 + PB1D9 SINE Alu 3 120 0 1 1543 223 260 53 30 chr5 125607618 125607655 -26929604 + BC1_Mm scRNA scRNA 95 134 -18 1 1543 301 363 143 14 chr5 125608675 125609024 -26928235 + L1MB5 LINE L1 5571 5964 -210 1 1543 203 0 0 36 chr5 125610271 125610299 -26926960 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 1 1543 218 262 16 16 chr5 125610659 125610721 -26926538 + MIRm SINE MIR 69 130 -146 1 1543 191 290 31 46 chr5 125610929 125610994 -26926265 - MIR SINE MIR -119 143 80 1 1543 963 241 93 20 chr5 125611222 125611468 -26925791 - B4 SINE B4 -27 265 2 1 1543 524 221 0 37 chr5 125613212 125613320 -26923939 - ID_B1 SINE B4 -29 195 92 1 1543 221 278 151 14 chr5 125613256 125613329 -26923930 - AluG_3 SINE Alu -92 219 137 1 1543 398 301 37 22 chr5 125613907 125613939 -26923320 + B4 SINE B4 57 90 -202 1 1543 615 172 15 7 chr5 125613939 125614079 -26923180 + B1_Mur1 SINE Alu 1 146 -3 1 1543 372 234 114 21 chr5 125614301 125614441 -26922818 - MIRm SINE MIR -89 187 35 1 1543 289 335 100 50 chr5 125614456 125614755 -26922504 - MLT1B LTR MaLR -19 371 58 1 1543 270 0 0 0 chr5 125615087 125615117 -26922142 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1543 402 69 0 0 chr5 125615117 125615174 -26922085 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1543 663 139 18 18 chr5 125615918 125616087 -26921172 + (CA)n Simple_repeat Simple_repeat 2 170 0 1 1543 187 244 13 13 chr5 125616126 125616205 -26921054 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 1543 386 212 18 24 chr5 125616229 125616398 -26920861 + (CA)n Simple_repeat Simple_repeat 1 168 0 1 1543 454 203 13 19 chr5 125616437 125616593 -26920666 + (CA)n Simple_repeat Simple_repeat 1 155 0 1 1543 286 280 29 39 chr5 125616722 125616826 -26920433 + MLT1A0 LTR MaLR 12 114 -251 1 1543 438 243 130 65 chr5 125617350 125617628 -26919631 + ORR1E LTR MaLR 7 355 -24 1 1543 1364 234 46 33 chr5 125617700 125618066 -26919193 + MTD LTR MaLR 5 346 -73 1 1543 347 309 10 0 chr5 125618633 125618730 -26918529 + RSINE1 SINE B4 4 101 -64 1 1543 937 154 0 14 chr5 125618759 125618904 -26918355 - B1_Mus2 SINE Alu 0 147 5 1 1543 235 332 14 0 chr5 125620184 125620275 -26916984 - MIRc SINE MIR -37 171 83 1 1543 1164 133 141 10 chr5 125622192 125622390 -26914869 - URR1B DNA MER1_type 0 225 2 1 1543 762 213 169 0 chr5 125622874 125623057 -26914202 + B3 SINE B2 3 216 0 1 1543 1040 52 97 0 chr5 125624337 125624471 -26912788 + B1_Mm SINE Alu 1 147 0 1 1543 1293 49 49 102 chr5 125624711 125624916 -26912343 + B2_Mm2 SINE B2 1 194 -1 1 1543 333 248 143 60 chr5 125624997 125625130 -26912129 + B1F SINE Alu 6 149 0 1 1543 427 252 45 9 chr5 125625147 125625259 -26912000 + PB1D7 SINE Alu 3 118 -2 1 1543 2792 59 53 60 chr5 125625340 125625512 -26911747 + MTA_Mm LTR MaLR 1 190 -206 1 1543 1123 53 0 0 chr5 125625512 125625644 -26911615 + B1_Mm SINE Alu 1 132 -15 1 1543 210 37 0 0 chr5 125625652 125625679 -26911580 + (G)n Simple_repeat Simple_repeat 1 27 0 1 1543 2792 59 53 60 chr5 125625679 125625896 -26911363 + MTA_Mm LTR MaLR 191 396 0 1 1543 227 241 147 35 chr5 125626872 125627014 -26910245 - MIRb SINE MIR -36 232 72 1 1543 225 94 0 0 chr5 125627272 125627304 -26909955 + (GGA)n Simple_repeat Simple_repeat 3 34 0 1 1543 459 198 108 0 chr5 125628448 125628559 -26908700 + MIR SINE MIR 73 195 -67 1 1543 369 0 0 0 chr5 125629304 125629345 -26907914 + (CAGCT)n Simple_repeat Simple_repeat 4 44 0 1 1543 267 276 102 11 chr5 125629405 125629493 -26907766 + MIRm SINE MIR 59 154 -122 1 1543 420 20 0 0 chr5 125630146 125630195 -26907064 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1543 190 328 107 25 chr5 125630266 125630388 -26906871 + MIR3 SINE MIR 23 154 -54 1 1543 400 241 0 132 chr5 125630393 125630415 -26906844 + ID_B1 SINE B4 77 215 -9 1 1543 743 147 0 52 chr5 125630415 125630551 -26906708 + B1_Mur4 SINE Alu 13 141 -9 1 1543 213 39 0 0 chr5 125630551 125630577 -26906682 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1543 409 225 124 8 chr5 125630586 125630707 -26906552 + RSINE1 SINE B4 2 136 -29 1 1543 809 37 19 0 chr5 125630749 125630857 -26906402 - B1_Mm SINE Alu -2 145 36 1 1543 253 159 0 31 chr5 125631531 125631596 -26905663 + G-rich Low_complexity Low_complexity 5 67 0 1 1543 239 380 37 0 chr5 125632080 125632188 -26905071 + MIRb SINE MIR 107 218 -50 1 1543 391 312 101 0 chr5 125632693 125632831 -26904428 + ID_B1 SINE B4 10 161 -63 1 1543 1025 214 9 23 chr5 125633061 125633276 -26903983 - B3 SINE B2 -4 212 1 1 1543 206 238 60 36 chr5 125633403 125633486 -26903773 + MIRm SINE MIR 174 258 -18 1 1543 384 237 148 9 chr5 125633507 125633622 -26903637 + B1F2 SINE Alu 18 148 -1 1 1543 347 256 26 0 chr5 125633637 125633715 -26903544 + ID4_ SINE ID 4 83 0 1 1543 395 268 59 26 chr5 125634337 125634357 -26902902 + ID_B1 SINE B4 64 221 -3 1 1543 430 242 83 8 chr5 125634357 125634490 -26902769 + B1F1 SINE Alu 7 149 0 1 1543 190 333 62 62 chr5 125635210 125635338 -26901921 + MIR SINE MIR 77 204 -58 1 1543 1322 280 50 16 chr5 125636516 125636897 -26900362 + MTD LTR MaLR 12 405 -14 1 1543 228 111 0 0 chr5 125636926 125636962 -26900297 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1543 450 0 0 0 chr5 125637148 125637198 -26900061 + (CACG)n Simple_repeat Simple_repeat 1 50 0 1 1543 201 132 0 0 chr5 125637779 125637817 -26899442 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1543 1186 88 46 12 chr5 125641494 125641667 -26895592 + B2_Mm2 SINE B2 2 180 -15 1 1543 421 239 55 0 chr5 125641675 125641784 -26895475 + RSINE1 SINE B4 25 139 -26 1 1543 990 231 10 20 chr5 125641848 125642051 -26895208 - B3 SINE B2 -15 201 1 1 1543 244 260 68 0 chr5 125642151 125642224 -26895035 - L1MB5 LINE L1 -47 6127 6050 1 1543 875 271 19 24 chr5 125642496 125642708 -26894551 - B3 SINE B2 0 216 6 1 1543 594 301 44 15 chr5 125642763 125642966 -26894293 + B4A SINE B4 1 209 -83 1 1543 284 194 0 0 chr5 125642966 125643028 -26894231 + ORR1A2 LTR MaLR 1 62 -265 1 1543 858 132 0 8 chr5 125643024 125643148 -26894111 + B1_Mus1 SINE Alu 10 133 -15 1 1543 231 36 0 0 chr5 125643148 125643176 -26894083 + (G)n Simple_repeat Simple_repeat 1 28 0 1 1543 1577 116 38 11 chr5 125643181 125643437 -26893822 + ORR1A2 LTR MaLR 24 291 -36 1 1543 21 0 0 0 chr5 125643524 125643545 -26893714 + GC_rich Low_complexity Low_complexity 1 21 0 1 1543 184 315 13 40 chr5 125644028 125644104 -26893155 + MIRm SINE MIR 80 153 -123 1 1543 231 319 14 27 chr5 125644884 125644958 -26892301 + MADE2 DNA Mariner 2 74 -6 1 1543 369 0 0 0 chr5 125645238 125645279 -26891980 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1543 422 198 0 128 chr5 125646676 125646979 -26890280 + (CGGGG)n Simple_repeat Simple_repeat 1 264 0 1 1543 202 259 0 115 chr5 125646878 125647026 -26890233 + (GGGTG)n Simple_repeat Simple_repeat 3 133 0 1 1543 244 231 108 0 chr5 125647854 125647919 -26889340 + MIRm SINE MIR 114 185 -91 1 1543 620 312 35 92 chr5 125648699 125648896 -26888363 - B4 SINE B4 -1 291 111 2 1543 693 136 322 29 chr5 125648896 125649070 -26888189 - URR1B DNA MER1_type 0 225 1 2 1543 620 312 35 92 chr5 125649070 125649133 -26888126 - B4 SINE B4 -182 110 46 2 1543 257 193 69 17 chr5 125649127 125649185 -26888074 - URR1B DNA MER1_type -164 61 1 2 1543 364 272 43 0 chr5 125649198 125649290 -26887969 - B4 SINE B4 -195 97 2 2 1543 378 250 106 46 chr5 125649307 125649458 -26887801 - RSINE1 SINE B4 -2 163 4 2 1543 340 320 39 0 chr5 125649485 125649588 -26887671 - PB1D10 SINE Alu -9 108 2 2 1543 294 339 108 29 chr5 125649700 125649990 -26887269 - MLT1C LTR MaLR -70 320 6 2 1543 180 0 0 0 chr5 125652134 125652154 -26885105 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1543 344 256 139 0 chr5 125652164 125652250 -26885009 + PB1D9 SINE Alu 2 99 -21 2 1543 385 237 20 10 chr5 125652680 125652778 -26884481 + B1F1 SINE Alu 1 99 -50 2 1543 1235 240 71 44 chr5 125652785 125653151 -26884108 + ORR1C1 LTR MaLR 1 376 -2 2 1543 235 71 48 0 chr5 125653556 125653598 -26883661 + (CCCCCA)n Simple_repeat Simple_repeat 2 45 0 2 1543 350 216 101 11 chr5 125653647 125653736 -26883523 + PB1 SINE Alu 29 125 -2 2 1543 292 276 0 50 chr5 125653749 125653829 -26883430 + ID SINE ID 3 78 -146 2 1543 25 0 0 0 chr5 125654647 125654672 -26882587 + AT_rich Low_complexity Low_complexity 1 25 0 2 1543 1465 66 0 5 chr5 125654682 125654841 -26882418 + B2_Mm1a SINE B2 2 160 -33 2 1543 273 29 0 0 chr5 125654841 125654875 -26882384 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 2 1543 1465 66 0 5 chr5 125654875 125654899 -26882360 + B2_Mm1a SINE B2 161 184 -9 2 1543 314 256 21 43 chr5 125655093 125655187 -26882072 - MIRb SINE MIR -116 152 61 2 1543 307 265 30 30 chr5 125655736 125655837 -26881422 + Charlie16a DNA MER1_type 128 228 -114 2 1543 204 40 0 0 chr5 125656507 125656532 -26880727 + (CCTG)n Simple_repeat Simple_repeat 3 27 0 2 1543 225 0 0 0 chr5 125656532 125656556 -26880703 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1543 207 355 37 43 chr5 125657617 125657779 -26879480 - MIR SINE MIR -73 189 29 2 1543 25 99 0 0 chr5 125659239 125659320 -26877939 + GC_rich Low_complexity Low_complexity 1 81 0 2 1543 34 108 0 0 chr5 125659475 125659614 -26877645 + GC_rich Low_complexity Low_complexity 1 139 0 2 1543 261 0 0 0 chr5 125659706 125659735 -26877524 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1543 225 0 0 0 chr5 125660899 125660924 -26876335 + (G)n Simple_repeat Simple_repeat 1 25 0 2 1543 382 189 8 109 chr5 125661580 125661699 -26875560 + ID_B1 SINE B4 115 221 -3 2 1543 888 195 6 11 chr5 125661710 125661886 -26875373 + B3 SINE B2 2 176 -40 2 1543 864 156 101 6 chr5 125661886 125661912 -26875347 - B2_Mm2 SINE B2 -11 184 156 2 1543 198 0 0 0 chr5 125661912 125661934 -26875325 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 2 1543 864 156 101 6 chr5 125661934 125662075 -26875184 - B2_Mm2 SINE B2 -40 155 1 2 1543 829 178 92 48 chr5 125662105 125662312 -26874947 + B3 SINE B2 1 216 0 2 1543 432 269 55 28 chr5 125662332 125662477 -26874782 + B1F1 SINE Alu 1 149 0 2 1543 350 200 29 0 chr5 125662522 125662592 -26874667 + ID4_ SINE ID 12 83 0 2 1543 1276 41 0 0 chr5 125662655 125662802 -26874457 - B1_Mus2 SINE Alu 0 147 1 2 1543 327 287 8 50 chr5 125663146 125663267 -26873992 + PB1D10 SINE Alu 1 116 -1 2 1543 216 67 0 0 chr5 125663639 125663669 -26873590 + (G)n Simple_repeat Simple_repeat 1 30 0 2 1543 1053 66 58 0 chr5 125664499 125664636 -26872623 - B1_Mus1 SINE Alu -3 145 1 2 1543 539 169 4 12 chr5 125665676 125665791 -26871468 + B1_Mus1 SINE Alu 5 115 -5 2 1543 678 149 0 17 chr5 125666436 125666552 -26870707 + B1_Mus1 SINE Alu 30 143 -5 2 1543 1535 237 24 27 chr5 125666973 125667013 -26870246 - ORR1D1 LTR MaLR -2 372 338 2 1543 2254 106 16 119 chr5 125667013 125667156 -26870103 + ORR1A1 LTR MaLR 1 111 -235 2 1543 1192 43 0 0 chr5 125667156 125667295 -26869964 - B1_Mus1 SINE Alu -8 140 2 2 1543 2254 106 16 119 chr5 125667295 125667537 -26869722 + ORR1A1 LTR MaLR 112 346 0 2 1543 1522 237 24 27 chr5 125667537 125667869 -26869390 - ORR1D1 LTR MaLR -37 337 1 2 1543 828 91 13 7 chr5 125668402 125668557 -26868702 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 2 1543 1531 206 48 66 chr5 125668557 125668952 -26868307 + ORR1B1 LTR MaLR 7 394 0 2 1543 294 103 29 29 chr5 125668979 125669049 -26868210 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 2 1543 481 315 128 32 chr5 125669147 125669546 -26867713 - MLT2B4 LTR ERVL -72 443 35 2 1543 308 330 9 9 chr5 125669609 125669725 -26867534 + L2b LINE L2 3260 3375 0 2 1543 246 243 99 122 chr5 125669728 125669747 -26867512 + MT2B LTR ERVL 151 166 -435 2 1543 549 121 118 25 chr5 125669747 125669866 -26867393 + B1_Mur4 SINE Alu 1 130 -20 2 1543 213 189 0 0 chr5 125669867 125669904 -26867355 + (CGAAA)n Simple_repeat Simple_repeat 3 39 0 2 1543 301 367 41 85 chr5 125669940 125670211 -26867048 - ORR1E LTR MaLR -44 315 57 2 1543 225 182 0 0 chr5 125670285 125670329 -26866930 + MLT1F LTR MaLR 67 110 -438 2 1543 756 265 61 57 chr5 125671675 125671955 -26865304 + B4 SINE B4 8 288 -4 2 1543 202 273 86 18 chr5 125672014 125672125 -26865134 - L2a LINE L2 -301 3125 3008 2 1543 273 57 0 0 chr5 125672347 125672382 -26864877 + (CCA)n Simple_repeat Simple_repeat 2 36 0 2 1543 262 274 0 16 chr5 125672609 125672672 -26864587 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1543 1049 63 0 14 chr5 125672734 125672879 -26864380 + B1_Mus1 SINE Alu 6 148 0 2 1543 402 283 51 76 chr5 125672738 125672895 -26864364 + B4A SINE B4 94 246 -46 2 1543 603 102 0 0 chr5 125672895 125672983 -26864276 + (GAAAA)n Simple_repeat Simple_repeat 4 91 0 2 1543 527 130 19 39 chr5 125673107 125673211 -26864048 + B1_Mur3 SINE Alu 48 149 0 2 1543 194 62 31 0 chr5 125673216 125673248 -26864011 + (GAGAA)n Simple_repeat Simple_repeat 2 34 0 2 1543 476 206 136 8 chr5 125673610 125673742 -26863517 + B1F SINE Alu 1 149 0 2 1543 602 197 63 0 chr5 125673752 125673879 -26863380 + RSINE1 SINE B4 2 136 -29 2 1543 954 149 190 60 chr5 125674718 125674918 -26862341 - URR1A DNA MER1_type 0 226 1 2 1543 612 247 137 6 chr5 125675833 125676008 -26861251 + ID_B1 SINE B4 1 198 -26 2 1543 939 193 86 0 chr5 125676008 125676205 -26861054 + B3 SINE B2 3 216 0 2 1543 1123 181 58 19 chr5 125676750 125676958 -26860301 + B3 SINE B2 1 216 0 2 1543 396 167 50 50 chr5 125677459 125677560 -26859699 + PB1D10 SINE Alu 10 110 -7 2 1543 273 168 56 0 chr5 125677636 125677743 -26859516 + (CA)n Simple_repeat Simple_repeat 1 113 0 2 1543 519 17 0 0 chr5 125677744 125677804 -26859455 + (GA)n Simple_repeat Simple_repeat 2 61 0 2 1543 342 0 0 0 chr5 125678010 125678048 -26859211 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1543 405 0 0 0 chr5 125678048 125678092 -26859167 + (GA)n Simple_repeat Simple_repeat 1 45 0 2 1543 950 281 51 0 chr5 125678100 125678353 -26858906 - B4A SINE B4 -8 284 19 2 1543 3315 53 2 2 chr5 125678355 125678751 -26858508 - MTA_Mm LTR MaLR 0 396 1 2 1543 295 298 103 76 chr5 125678751 125678763 -26858496 - B2_Mm2 SINE B2 -5 190 179 2 1543 581 186 153 0 chr5 125678763 125678887 -26858372 - B1_Mur2 SINE Alu -6 143 1 2 1543 581 296 25 11 chr5 125678887 125679059 -26858200 - B3A SINE B2 -17 178 1 2 1543 1142 69 14 7 chr5 125679323 125679469 -26857790 - B1_Mus1 SINE Alu 0 148 2 2 1543 486 138 0 12 chr5 125679771 125679852 -26857407 + B1_Mur2 SINE Alu 68 147 -2 2 1543 269 338 56 56 chr5 125679892 125680036 -26857223 + L2a LINE L2 2980 3123 -303 2 1543 548 281 41 29 chr5 125680434 125680606 -26856653 + B3 SINE B2 1 174 -42 2 1543 876 179 0 14 chr5 125680618 125680765 -26856494 + B1_Mur2 SINE Alu 2 146 -3 2 1543 751 250 96 5 chr5 125680801 125680998 -26856261 - ID_B1 SINE B4 -8 216 2 2 1543 1004 90 0 0 chr5 125681035 125681168 -26856091 + B1_Mus1 SINE Alu 5 137 -11 2 1543 270 0 0 0 chr5 125681168 125681198 -26856061 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2 1543 752 246 28 6 chr5 125681215 125681391 -26855868 - B3A SINE B2 -18 180 1 2 1543 249 33 0 0 chr5 125681763 125681793 -26855466 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1543 189 0 0 0 chr5 125682203 125682224 -26855035 + (CTTG)n Simple_repeat Simple_repeat 1 21 0 2 1543 309 118 0 0 chr5 125682225 125682276 -26854983 + (T)n Simple_repeat Simple_repeat 1 51 0 2 1543 1202 68 0 7 chr5 125682278 125682426 -26854833 - B1_Mus1 SINE Alu 0 148 2 2 1543 201 309 12 36 chr5 125683083 125683167 -26854092 + L2 LINE L2 2996 3077 -342 2 1543 518 190 48 40 chr5 125684034 125684160 -26853099 - B1F SINE Alu -1 148 22 2 1543 661 196 0 22 chr5 125684049 125684185 -26853074 - ID_B1 SINE B4 -11 213 81 2 1543 401 173 0 167 chr5 125684534 125684562 -26852697 - B4 SINE B4 0 292 272 2 1543 378 0 0 0 chr5 125684562 125684604 -26852655 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1543 401 173 0 167 chr5 125684604 125684707 -26852552 - B4 SINE B4 -21 271 183 2 1543 469 255 0 100 chr5 125685252 125685266 -26851993 - ID_B1 SINE B4 0 224 173 2 1543 832 144 0 0 chr5 125685266 125685398 -26851861 - B1_Mus2 SINE Alu -6 141 10 2 1543 469 255 0 100 chr5 125685398 125685422 -26851837 - ID_B1 SINE B4 0 172 72 2 1543 574 219 59 52 chr5 125685405 125685578 -26851681 - B3 SINE B2 0 216 39 2 1543 1380 80 26 16 chr5 125685578 125685768 -26851491 - B2_Mm2 SINE B2 -3 192 1 2 1543 269 312 59 129 chr5 125685768 125685796 -26851463 - B3A SINE B2 -160 38 11 2 1543 567 222 17 0 chr5 125685810 125685927 -26851332 - PB1D7 SINE Alu 0 120 2 2 1543 397 300 63 15 chr5 125685983 125686187 -26851072 - L1ME1 LINE L1 -500 5844 5633 2 1543 874 227 0 6 chr5 125686623 125686787 -26850472 + RSINE1 SINE B4 2 164 -1 3 1543 291 28 0 0 chr5 125686790 125686826 -26850433 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1543 226 233 54 14 chr5 125686855 125686929 -26850330 - Charlie8 DNA MER1_type -2122 306 230 3 1543 1238 35 7 0 chr5 125687014 125687159 -26850100 + B1_Mm SINE Alu 2 147 0 3 1543 207 0 0 0 chr5 125687168 125687191 -26850068 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1543 322 281 0 88 chr5 125687562 125687687 -26849572 + ID_B1 SINE B4 109 222 -2 3 1543 207 333 9 45 chr5 125688076 125688186 -26849073 + MIR SINE MIR 80 185 -77 3 1543 316 367 7 0 chr5 125688540 125688852 -26848407 + (CA)n Simple_repeat Simple_repeat 1 314 0 3 1543 251 326 0 0 chr5 125689137 125689232 -26848027 + (CA)n Simple_repeat Simple_repeat 1 95 0 3 1543 249 320 0 10 chr5 125689301 125689399 -26847860 + (CA)n Simple_repeat Simple_repeat 1 97 0 3 1543 1190 72 24 0 chr5 125689844 125690010 -26847249 + B2_Mm2 SINE B2 2 171 -24 3 1543 375 273 99 0 chr5 125690150 125690271 -26846988 + RSINE1 SINE B4 3 135 -30 3 1543 33 25 0 0 chr5 125690281 125690321 -26846938 + AT_rich Low_complexity Low_complexity 1 40 0 3 1543 426 233 84 25 chr5 125691162 125691281 -26845978 + B1_Mur1 SINE Alu 22 147 -2 3 1543 551 112 11 0 chr5 125691298 125691387 -26845872 + (GAA)n Simple_repeat Simple_repeat 1 90 0 3 1543 269 36 17 52 chr5 125691429 125691487 -26845772 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 3 1543 690 13 0 0 chr5 125691487 125691566 -26845693 + (GGAA)n Simple_repeat Simple_repeat 4 82 0 3 1543 219 36 0 0 chr5 125691723 125691751 -26845508 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 3 1543 1162 49 14 0 chr5 125691752 125691895 -26845364 - B1_Mus1 SINE Alu 0 148 4 3 1543 200 167 0 0 chr5 125692796 125692826 -26844433 + C-rich Low_complexity Low_complexity 3 32 0 3 1543 192 152 0 0 chr5 125692865 125692898 -26844361 + (TTA)n Simple_repeat Simple_repeat 1 33 0 3 1543 262 0 0 73 chr5 125692898 125692939 -26844320 - B1_Mm SINE Alu -21 126 89 3 1543 453 194 167 16 chr5 125692941 125692981 -26844278 - B1_Mur1 SINE Alu 0 149 102 3 1543 593 0 12 12 chr5 125692981 125693063 -26844196 - L1Md_F2 LINE L1 -2 6580 6499 3 1543 539 106 129 0 chr5 125693063 125693148 -26844111 - B1_Mus1 SINE Alu -48 100 5 3 1543 1028 137 0 0 chr5 125693188 125693334 -26843925 + B1_Mus1 SINE Alu 2 147 -1 3 1543 445 164 0 0 chr5 125693367 125693440 -26843819 - ID_B1 SINE B4 -23 201 129 3 1543 384 179 255 0 chr5 125693440 125693464 -26843795 - B1F SINE Alu -12 105 5 3 1543 643 310 104 81 chr5 125694073 125694554 -26842705 + MER77 LTR ERVL 10 501 -106 3 1543 250 111 0 6 chr5 125694828 125694878 -26842381 - B1_Mur2 SINE Alu -4 113 65 3 1543 1416 75 32 0 chr5 125694881 125695069 -26842190 - B2_Mm2 SINE B2 0 195 2 3 1543 772 182 21 7 chr5 125695147 125695291 -26841968 + B3 SINE B2 2 147 -69 3 1543 369 189 0 50 chr5 125697131 125697223 -26840036 + B1_Mm SINE Alu 20 130 -17 3 1543 262 237 17 0 chr5 125697223 125697282 -26839977 + GA-rich Low_complexity Low_complexity 2 61 0 3 1543 1021 193 29 19 chr5 125697339 125697545 -26839714 - B3 SINE B2 -1 215 8 3 1543 749 233 30 68 chr5 125697565 125697800 -26839459 - B4 SINE B4 -66 226 1 3 1543 319 310 57 0 chr5 125697805 125697928 -26839331 + MIRb SINE MIR 129 261 -1 3 1544 214 286 10 30 chr5 125698725 125698826 -26838433 - MIR SINE MIR -86 176 78 3 1544 1681 36 0 0 chr5 125699030 125699222 -26838037 - B2_Mm1a SINE B2 0 193 2 3 1544 1296 75 46 0 chr5 125700179 125700353 -26836906 + B2_Mm2 SINE B2 5 186 -9 3 1544 404 226 139 12 chr5 125700390 125700543 -26836716 + MTEb LTR MaLR 191 354 -25 3 1544 320 340 99 21 chr5 125700545 125700601 -26836658 - L1MC LINE L1 -1996 4150 4094 3 1544 3265 68 2 0 chr5 125700601 125701000 -26836259 + MTB LTR MaLR 1 400 0 3 1544 320 340 99 21 chr5 125701000 125701186 -26836073 - L1MC LINE L1 -2053 4093 3890 3 1544 1185 118 10 56 chr5 125701187 125701346 -26835913 - B2_Mm2 SINE B2 -5 190 40 3 1544 1484 74 16 0 chr5 125701346 125701536 -26835723 - B2_Mm2 SINE B2 -2 193 1 3 1544 1185 118 10 56 chr5 125701536 125701574 -26835685 - B2_Mm2 SINE B2 -156 39 2 3 1544 814 334 60 0 chr5 125701751 125702053 -26835206 - MLT1C LTR MaLR 0 467 148 3 1544 314 207 0 0 chr5 125702658 125702716 -26834543 + B2_Mm2 SINE B2 47 104 -91 3 1544 206 176 0 19 chr5 125703339 125703391 -26833868 + CT-rich Low_complexity Low_complexity 3 53 0 3 1544 244 200 18 35 chr5 125703697 125703754 -26833505 - L2a LINE L2 -12 3414 3359 3 1544 1130 62 0 20 chr5 125704007 125704156 -26833103 + B1_Mus2 SINE Alu 2 147 0 3 1544 917 215 8 89 chr5 125706239 125706474 -26830785 + B3 SINE B2 1 216 0 3 1544 324 0 0 0 chr5 125707578 125707614 -26829645 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1544 303 228 0 0 chr5 125707628 125707685 -26829574 - RSINE1 SINE B4 -106 59 3 3 1544 959 206 136 8 chr5 125707919 125708169 -26829090 - B4 SINE B4 -6 286 5 3 1544 981 195 92 0 chr5 125708202 125708387 -26828872 - B3 SINE B2 -10 206 5 3 1544 302 283 37 9 chr5 125708530 125708637 -26828622 + Cheshire DNA MER1_type 168 277 -2143 3 1544 662 216 96 15 chr5 125709881 125710017 -26827242 - B1_Mur1 SINE Alu -2 147 1 3 1544 190 106 0 41 chr5 125710033 125710082 -26827177 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 3 1544 307 134 224 35 chr5 125711173 125711258 -26826001 - MTD LTR MaLR -90 329 229 3 1544 315 141 0 0 chr5 125711267 125711331 -26825928 + (TCTCTG)n Simple_repeat Simple_repeat 4 67 0 3 1544 1067 214 4 70 chr5 125711331 125711439 -26825820 - MTD LTR MaLR -194 225 119 3 1544 7403 53 0 0 chr5 125711439 125712329 -26824930 + L1Md_F2 LINE L1 5693 6582 0 3 1544 1067 214 4 70 chr5 125712329 125712461 -26824798 - MTD LTR MaLR -301 118 1 3 1544 189 241 0 0 chr5 125712568 125712622 -26824637 + CT-rich Low_complexity Low_complexity 4 57 0 3 1544 344 208 25 49 chr5 125712630 125712711 -26824548 - PB1D9 SINE Alu 0 120 42 3 1544 284 0 0 160 chr5 125712714 125712858 -26824401 + (CTCTG)n Simple_repeat Simple_repeat 5 125 0 3 1544 317 185 0 0 chr5 125712866 125712920 -26824339 - B1_Mus2 SINE Alu -93 54 1 3 1544 231 224 0 162 chr5 125712920 125712939 -26824320 - MT2B LTR ERVL -385 201 150 3 1544 1210 61 0 0 chr5 125713427 125713574 -26823685 - B1_Mm SINE Alu 0 147 1 3 1544 1339 76 54 0 chr5 125713576 125713760 -26823499 - B2_Mm2 SINE B2 -1 194 1 3 1544 732 234 95 15 chr5 125713961 125714161 -26823098 - B3 SINE B2 0 216 1 3 1544 251 73 0 47 chr5 125714302 125714345 -26822914 + (CCCCCT)n Simple_repeat Simple_repeat 2 42 0 3 1544 338 254 0 0 chr5 125714360 125714431 -26822828 - ID SINE ID -153 71 1 3 1544 281 253 145 0 chr5 125714448 125714531 -26822728 - B3 SINE B2 -3 213 119 3 1544 481 181 27 73 chr5 125714495 125714638 -26822621 + ID_B1 SINE B4 59 198 -94 3 1544 767 104 0 0 chr5 125714535 125714650 -26822609 + B1_Mm SINE Alu 11 125 -22 3 1544 773 190 7 7 chr5 125715131 125715274 -26821985 - B1_Mur2 SINE Alu -1 148 6 3 1544 1249 179 14 14 chr5 125715844 125716059 -26821200 + B3 SINE B2 2 216 0 3 1544 928 155 186 37 chr5 125716068 125716256 -26821003 + B3 SINE B2 1 216 0 3 1544 202 159 0 45 chr5 125716821 125716887 -26820372 + (TCTCTG)n Simple_repeat Simple_repeat 6 68 0 3 1544 521 163 0 0 chr5 125716887 125716973 -26820286 - B1_Mur4 SINE Alu 0 150 65 3 1544 272 281 12 35 chr5 125717056 125717141 -26820118 - RSINE1 SINE B4 -33 132 50 3 1544 469 144 108 32 chr5 125717146 125717239 -26820020 - B1_Mur1 SINE Alu -8 141 42 3 1544 246 214 72 72 chr5 125717168 125717279 -26819980 - RLTR25B LTR ERVK -521 507 397 3 1544 563 204 115 32 chr5 125717337 125717494 -26819765 - B4 SINE B4 -73 219 50 3 1544 1294 198 46 95 chr5 125719405 125719795 -26817464 - RLTR11A LTR ERVK 0 528 158 3 1544 300 195 169 0 chr5 125719795 125719872 -26817387 + RLTR11A LTR ERVK 63 152 -376 3 1544 967 229 5 15 chr5 125719873 125720068 -26817191 + B3 SINE B2 24 216 0 3 1544 3409 121 11 35 chr5 125720334 125720874 -26816385 - RLTR11A2 LTR ERVK 0 527 1 3 1544 506 148 23 0 chr5 125721194 125721282 -26815977 + B1_Mur4 SINE Alu 1 90 -60 3 1544 1243 85 3 6 chr5 125721284 125721639 -26815620 + (GAAA)n Simple_repeat Simple_repeat 1 354 0 3 1544 217 91 0 64 chr5 125721639 125721686 -26815573 + GA-rich Low_complexity Low_complexity 1 44 0 3 1544 221 0 35 0 chr5 125722211 125722240 -26815019 + (AGGGGG)n Simple_repeat Simple_repeat 3 32 0 3 1544 1661 42 0 0 chr5 125722904 125723096 -26814163 - B2_Mm1a SINE B2 0 193 2 3 1544 1206 75 0 0 chr5 125723123 125723270 -26813989 + B1_Mm SINE Alu 1 147 0 3 1544 39 0 0 0 chr5 125723270 125723309 -26813950 + AT_rich Low_complexity Low_complexity 1 39 0 3 1544 472 258 0 9 chr5 125723314 125723541 -26813718 + (TATG)n Simple_repeat Simple_repeat 1 224 0 3 1544 446 235 169 0 chr5 125723541 125723677 -26813582 - B3A SINE B2 -15 183 25 3 1544 402 157 0 0 chr5 125723701 125723784 -26813475 + G-rich Low_complexity Low_complexity 4 86 0 3 1544 832 90 14 20 chr5 125723793 125723941 -26813318 + (GAA)n Simple_repeat Simple_repeat 3 149 0 3 1544 251 200 167 0 chr5 125723946 125724006 -26813253 + ID2 SINE ID 14 83 0 3 1544 431 237 0 7 chr5 125724177 125724313 -26812946 + (TG)n Simple_repeat Simple_repeat 1 135 0 3 1544 342 0 0 0 chr5 125726502 125726540 -26810719 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1544 566 176 125 37 chr5 125726575 125726711 -26810548 - B1F2 SINE Alu 0 149 2 4 1544 188 324 40 53 chr5 125726750 125726825 -26810434 + MIR SINE MIR 80 153 -109 4 1544 1209 68 0 0 chr5 125726904 125727050 -26810209 + B1_Mus2 SINE Alu 2 147 0 4 1544 713 163 7 0 chr5 125727056 125727191 -26810068 + A-rich Low_complexity Low_complexity 3 138 0 4 1544 456 260 0 0 chr5 125727199 125727295 -26809964 + PB1D10 SINE Alu 2 97 -20 4 1544 428 105 0 13 chr5 125727351 125727428 -26809831 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1544 455 279 91 35 chr5 125727444 125727641 -26809618 - B4A SINE B4 -27 265 58 4 1544 305 321 40 60 chr5 125727992 125728141 -26809118 - ORR1E LTR MaLR -213 146 1 4 1544 1030 105 0 0 chr5 125728864 125728997 -26808262 + B1_Mus1 SINE Alu 2 134 -14 4 1544 587 243 79 23 chr5 125729064 125729241 -26808018 - B2_Mm2 SINE B2 -8 187 1 4 1544 838 196 174 0 chr5 125730036 125730220 -26807039 + B3 SINE B2 1 216 0 4 1544 478 166 51 51 chr5 125730227 125730405 -26806854 + RMER17C LTR ERVK 97 274 -136 4 1544 260 83 0 20 chr5 125730433 125730445 -26806814 + (CAAA)n Simple_repeat Simple_repeat 2 13 0 4 1544 1221 48 14 0 chr5 125730445 125730591 -26806668 + B1_Mus1 SINE Alu 1 148 0 4 1544 260 83 0 20 chr5 125730591 125730627 -26806632 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 4 1544 635 273 45 11 chr5 125730773 125730891 -26806368 + B4A SINE B4 109 227 -65 4 1544 392 350 70 0 chr5 125730891 125731034 -26806225 + RSINE1 SINE B4 1 153 -12 4 1544 243 0 0 0 chr5 125731035 125731062 -26806197 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 4 1544 635 273 45 11 chr5 125731062 125731119 -26806140 + B4A SINE B4 228 290 -2 4 1544 388 245 105 11 chr5 125731261 125731356 -26805903 - PB1D7 SINE Alu -15 105 2 4 1544 249 326 31 0 chr5 125731359 125731457 -26805802 - MER3 DNA MER1_type -42 167 67 4 1544 483 18 0 0 chr5 125731558 125731614 -26805645 + (TC)n Simple_repeat Simple_repeat 1 56 0 4 1544 261 315 93 41 chr5 125731789 125731961 -26805298 - L2a LINE L2 -273 3153 2973 4 1544 1193 61 0 26 chr5 125732068 125732219 -26805040 - B1_Mus1 SINE Alu 0 148 2 4 1544 970 185 49 89 chr5 125732299 125732524 -26804735 + B3 SINE B2 1 216 0 4 1544 315 0 0 0 chr5 125733458 125733493 -26803766 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1544 688 126 1 8 chr5 125733597 125733718 -26803541 - B1_Mur3 SINE Alu -23 124 8 4 1544 412 285 184 15 chr5 125733725 125733921 -26803338 - B4 SINE B4 -63 229 1 4 1544 497 235 8 50 chr5 125735377 125735498 -26801761 + PB1D10 SINE Alu 2 117 0 4 1544 613 290 61 65 chr5 125735515 125735678 -26801581 + B3A SINE B2 2 166 -50 4 1544 330 98 0 0 chr5 125735678 125735729 -26801530 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1544 917 224 27 45 chr5 125735736 125735956 -26801303 + B3 SINE B2 1 216 0 4 1544 504 290 61 65 chr5 125735956 125735998 -26801261 + B3 SINE B2 171 213 -3 4 1544 839 151 0 14 chr5 125736112 125736253 -26801006 + B1_Mm SINE Alu 9 147 0 4 1544 1591 31 10 20 chr5 125736268 125736463 -26800796 + B2_Mm1t SINE B2 1 193 0 4 1544 264 224 35 0 chr5 125736915 125736973 -26800286 + PB1D10 SINE Alu 45 104 -13 4 1544 421 194 238 31 chr5 125736978 125737138 -26800121 - B2_Mm2 SINE B2 0 195 3 4 1544 1334 91 11 0 chr5 125737139 125737314 -26799945 - B2_Mm1t SINE B2 -14 179 3 4 1544 1275 41 0 0 chr5 125737477 125737624 -26799635 - B1_Mus2 SINE Alu 0 147 1 4 1544 238 306 16 0 chr5 125738100 125738162 -26799097 - PB1 SINE Alu -64 63 1 4 1544 1386 133 6 2 chr5 125738218 125738848 -26798411 + (TGGA)n Simple_repeat Simple_repeat 1 633 0 4 1544 270 271 0 14 chr5 125738850 125738921 -26798338 + (TGGG)n Simple_repeat Simple_repeat 3 72 0 4 1544 301 243 116 45 chr5 125739383 125739495 -26797764 + MIRc SINE MIR 22 144 -124 4 1544 182 278 41 14 chr5 125739958 125740031 -26797228 + MIRc SINE MIR 74 148 -120 4 1544 892 155 0 0 chr5 125740207 125740349 -26796910 - B1_Mus1 SINE Alu 0 148 7 4 1544 266 0 29 0 chr5 125741132 125741166 -26796093 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 4 1544 1179 48 14 0 chr5 125741175 125741320 -26795939 - B1_Mus1 SINE Alu 0 148 2 4 1544 234 150 0 0 chr5 125741342 125741382 -26795877 + (TCC)n Simple_repeat Simple_repeat 2 41 0 4 1544 241 299 37 20 chr5 125741916 125742024 -26795235 + MIRc SINE MIR 54 163 -105 4 1544 215 290 42 31 chr5 125743039 125743135 -26794124 - L2b LINE L2 -2 3373 3277 4 1544 210 143 0 0 chr5 125743471 125743520 -26793739 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1544 362 222 24 36 chr5 125743634 125743718 -26793541 + B4A SINE B4 2 84 -208 4 1544 259 217 186 32 chr5 125743719 125743843 -26793416 + B1_Mur2 SINE Alu 1 143 -6 4 1544 1429 86 11 0 chr5 125743852 125744038 -26793221 + B2_Mm1t SINE B2 2 189 -4 4 1544 283 258 30 0 chr5 125744038 125744104 -26793155 + B4A SINE B4 225 292 0 4 1544 570 201 21 30 chr5 125744120 125744551 -26792708 + (CATATA)n Simple_repeat Simple_repeat 1 426 0 4 1544 416 207 6 44 chr5 125744568 125744750 -26792509 + (CATA)n Simple_repeat Simple_repeat 4 178 0 4 1544 239 361 43 25 chr5 125744817 125744979 -26792280 + MLT1I LTR MaLR 247 411 0 4 1544 339 25 0 0 chr5 125745909 125745949 -26791310 + (CACCAT)n Simple_repeat Simple_repeat 4 43 0 4 1544 331 215 0 0 chr5 125746847 125746912 -26790347 + ID4_ SINE ID 18 82 -1 4 1544 1025 115 0 25 chr5 125747197 125747358 -26789901 + B2_Mm2 SINE B2 2 158 -37 4 1544 306 0 0 0 chr5 125747360 125747394 -26789865 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 4 1544 991 176 166 0 chr5 125749670 125749863 -26787396 + URR1B DNA MER1_type 1 225 0 4 1544 232 255 68 64 chr5 125750087 125750230 -26787029 + MIR3 SINE MIR 106 259 -9 4 1544 800 243 28 32 chr5 125750306 125750523 -26786736 - B3 SINE B2 0 216 1 4 1544 245 211 113 26 chr5 125750771 125750922 -26786337 - RMER17C LTR ERVK -133 277 114 4 1544 266 291 0 23 chr5 125751531 125751619 -26785640 - PB1D10 SINE Alu 0 117 32 4 1544 225 314 14 0 chr5 125752427 125752497 -26784762 - PB1D10 SINE Alu 0 117 47 4 1544 358 228 29 19 chr5 125752498 125752601 -26784658 - ID_B1 SINE B4 0 224 121 4 1544 486 0 0 0 chr5 125752843 125752897 -26784362 + (TG)n Simple_repeat Simple_repeat 2 55 0 4 1544 874 217 107 145 chr5 125753020 125753414 -26783845 - MTE2a LTR MaLR 0 379 1 4 1544 653 150 158 0 chr5 125753700 125753827 -26783432 + B1_Mus2 SINE Alu 1 147 0 4 1544 340 231 111 124 chr5 125753860 125754013 -26783246 + B4 SINE B4 1 151 -141 4 1544 324 0 0 0 chr5 125754013 125754049 -26783210 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1544 288 53 0 0 chr5 125754175 125754213 -26783046 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1544 570 90 308 94 chr5 125754580 125754739 -26782520 - B2_Mm2 SINE B2 -2 193 1 4 1544 844 136 71 0 chr5 125754744 125754884 -26782375 - B1_Mur4 SINE Alu 0 150 1 4 1544 619 99 10 10 chr5 125754894 125754996 -26782263 + (TCC)n Simple_repeat Simple_repeat 3 104 0 4 1544 506 244 87 0 chr5 125754999 125755114 -26782145 - B1_Mur1 SINE Alu -15 134 10 4 1544 288 77 0 0 chr5 125755120 125755159 -26782100 + (TCC)n Simple_repeat Simple_repeat 3 41 0 4 1544 566 251 144 6 chr5 125755166 125755346 -26781913 - ID_B1 SINE B4 -19 205 1 4 1544 1429 54 11 31 chr5 125755465 125755656 -26781603 + B2_Mm1t SINE B2 1 187 -6 4 1544 359 307 0 0 chr5 125756107 125756195 -26781064 + PB1 SINE Alu 21 108 -19 4 1544 889 145 0 105 chr5 125756226 125756388 -26780871 + B1_Mus2 SINE Alu 3 147 0 4 1544 268 264 54 21 chr5 125756390 125756483 -26780776 + B1_Mur3 SINE Alu 3 98 -51 4 1544 658 245 68 0 chr5 125756620 125756767 -26780492 + RSINE1 SINE B4 1 157 -8 4 1544 1374 61 49 11 chr5 125756838 125757021 -26780238 - B2_Mm2 SINE B2 -4 191 2 4 1544 216 273 18 0 chr5 125758411 125758466 -26778793 - MIR3 SINE MIR -43 165 110 4 1544 198 171 0 0 chr5 125759029 125759070 -26778189 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 4 1544 1266 41 0 0 chr5 125759078 125759225 -26778034 + B1_Mus1 SINE Alu 2 148 0 4 1544 222 130 0 61 chr5 125759235 125759284 -26777975 + A-rich Low_complexity Low_complexity 2 47 0 4 1544 420 232 0 0 chr5 125759307 125759418 -26777841 + B1F2 SINE Alu 9 119 -1 4 1544 209 250 0 0 chr5 125760381 125760437 -26776822 + C-rich Low_complexity Low_complexity 1 56 0 4 1544 1667 21 0 20 chr5 125761064 125761259 -26776000 - B2_Mm1a SINE B2 -1 192 2 4 1544 432 0 0 0 chr5 125762388 125762436 -26774823 + (CAAG)n Simple_repeat Simple_repeat 2 49 0 4 1544 1449 59 32 5 chr5 125762897 125762927 -26774332 - B2_Mm1a SINE B2 -1 192 157 4 1544 351 0 0 0 chr5 125762927 125762966 -26774293 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4 1544 1449 59 32 5 chr5 125762966 125763121 -26774138 - B2_Mm1a SINE B2 -37 156 2 4 1544 1191 87 98 6 chr5 125763123 125763297 -26773962 - B2_Mm2 SINE B2 -3 192 3 4 1544 478 209 16 94 chr5 125763330 125763457 -26773802 - ID_B1 SINE B4 -6 218 102 4 1544 719 239 55 25 chr5 125763464 125763666 -26773593 - B3 SINE B2 -7 209 2 4 1544 21 57 0 0 chr5 125763685 125763720 -26773539 + AT_rich Low_complexity Low_complexity 1 35 0 4 1544 302 313 0 12 chr5 125763720 125763804 -26773455 - ID2 SINE ID 0 83 1 4 1544 267 265 15 0 chr5 125764533 125764601 -26772658 + MLT1J2 LTR MaLR 66 134 -314 5 1544 811 202 68 42 chr5 125764758 125764949 -26772310 + B3 SINE B2 10 205 -11 5 1544 272 190 0 49 chr5 125765289 125765350 -26771909 + ID_B1 SINE B4 161 218 -6 5 1544 557 247 65 20 chr5 125765358 125765502 -26771757 + RSINE1 SINE B4 2 152 -13 5 1544 414 0 0 0 chr5 125765502 125765548 -26771711 + (CA)n Simple_repeat Simple_repeat 2 47 0 5 1544 742 134 167 58 chr5 125765565 125765739 -26771520 + B2_Mm2 SINE B2 1 193 -2 5 1544 902 107 0 41 chr5 125765753 125765899 -26771360 + B1_Mur4 SINE Alu 10 149 -1 5 1544 398 154 13 0 chr5 125765899 125765977 -26771282 + (TAA)n Simple_repeat Simple_repeat 1 79 0 5 1544 367 254 99 21 chr5 125766107 125766248 -26771011 + B4A SINE B4 4 155 -137 5 1544 230 183 0 53 chr5 125766345 125766420 -26770839 + A-rich Low_complexity Low_complexity 1 71 0 5 1544 252 281 24 0 chr5 125766736 125766818 -26770441 + B1F SINE Alu 47 130 -19 5 1544 1353 92 22 0 chr5 125767025 125767210 -26770049 - B2_Mm2 SINE B2 -6 189 1 5 1544 590 223 134 0 chr5 125767327 125767484 -26769775 + B3 SINE B2 21 198 -18 5 1544 825 250 97 0 chr5 125768090 125768286 -26768973 - ID_B1 SINE B4 -8 216 2 5 1544 1168 113 11 0 chr5 125768533 125768719 -26768540 + B2_Mm2 SINE B2 4 191 -4 5 1544 403 330 95 47 chr5 125769065 125769339 -26767920 + MER68 LTR ERVL 82 368 -195 5 1544 218 168 44 100 chr5 125769406 125769498 -26767761 + PB1D10 SINE Alu 33 112 -8 5 1544 198 0 0 0 chr5 125770280 125770302 -26766957 + (TGGG)n Simple_repeat Simple_repeat 2 23 0 5 1544 930 172 0 0 chr5 125770774 125770919 -26766340 + B1_Mus2 SINE Alu 1 145 -2 5 1544 1464 78 10 5 chr5 125770925 125771118 -26766141 + B2_Mm2 SINE B2 2 195 0 5 1544 329 210 123 0 chr5 125771136 125771217 -26766042 + B1_Mus1 SINE Alu 1 91 -57 5 1544 464 214 402 15 chr5 125772555 125772714 -26764545 + B4A SINE B4 1 230 -62 5 1544 213 39 0 0 chr5 125772714 125772740 -26764519 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1544 464 214 402 15 chr5 125772740 125772779 -26764480 + B4A SINE B4 231 276 -16 5 1544 216 0 0 0 chr5 125772852 125772876 -26764383 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1544 327 302 10 10 chr5 125773900 125773997 -26763262 + PB1D7 SINE Alu 14 110 -10 5 1544 350 275 107 0 chr5 125774003 125774152 -26763107 + MLT1D LTR MaLR 252 416 -89 5 1544 284 149 0 0 chr5 125774811 125774858 -26762401 + URR1B DNA MER1_type 68 114 -111 5 1544 1198 34 0 33 chr5 125774865 125775018 -26762241 + B1_Mus1 SINE Alu 1 148 0 5 1544 378 42 0 0 chr5 125775020 125775068 -26762191 + (GAAA)n Simple_repeat Simple_repeat 2 49 0 5 1544 301 179 126 78 chr5 125775604 125775707 -26761552 + PB1D9 SINE Alu 12 119 -1 5 1544 633 61 0 0 chr5 125775765 125775847 -26761412 + (TC)n Simple_repeat Simple_repeat 2 83 0 5 1544 531 227 76 0 chr5 125775871 125775990 -26761269 - B1_Mur1 SINE Alu -20 129 2 5 1544 869 229 69 82 chr5 125776057 125776362 -26760897 + MTE2a LTR MaLR 3 303 -76 5 1544 344 290 60 15 chr5 125776409 125776542 -26760717 + L1MC4 LINE L1 7753 7891 -151 5 1544 227 316 0 0 chr5 125776576 125776633 -26760626 + ID4 SINE ID 14 70 -13 5 1544 396 0 0 0 chr5 125776633 125776677 -26760582 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1544 762 216 42 26 chr5 125776684 125776738 -26760521 + B3A SINE B2 2 58 -140 5 1544 1160 36 0 21 chr5 125776738 125776878 -26760381 + B1_Mm SINE Alu 1 137 -10 5 1544 225 0 0 0 chr5 125776878 125776903 -26760356 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1544 762 216 42 26 chr5 125776903 125777037 -26760222 + B3A SINE B2 59 193 -5 5 1544 259 264 0 0 chr5 125777422 125777475 -26759784 + MTE2a LTR MaLR 327 379 0 5 1544 267 132 126 16 chr5 125777882 125777948 -26759311 + B1_Mur1 SINE Alu 63 137 -12 5 1544 198 0 0 0 chr5 125777948 125777970 -26759289 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 5 1544 1045 139 202 0 chr5 125778058 125778231 -26759028 + B3 SINE B2 1 208 -8 5 1544 334 325 17 26 chr5 125778274 125778391 -26758868 + PB1D10 SINE Alu 2 117 0 5 1544 858 152 7 7 chr5 125778393 125778539 -26758720 + ZP3AR Satellite Satellite 48 193 -19 5 1544 334 239 14 0 chr5 125779209 125779280 -26757979 - ID4_ SINE ID -11 72 1 5 1544 1247 44 0 0 chr5 125779301 125779459 -26757800 - B2_Mm2 SINE B2 -37 158 1 5 1544 291 306 102 0 chr5 125779491 125779589 -26757670 - PB1D10 SINE Alu -8 109 2 5 1544 822 180 14 7 chr5 125779619 125779759 -26757500 + B1_Mus2 SINE Alu 5 145 -2 5 1544 1139 123 15 15 chr5 125780060 125780258 -26757001 - B3 SINE B2 -2 214 17 5 1544 214 258 14 43 chr5 125780200 125780269 -26756990 - ID4 SINE ID -9 74 8 5 1544 355 250 62 10 chr5 125780567 125780664 -26756595 + MLT1K LTR MaLR 460 561 -34 5 1544 234 103 345 51 chr5 125781342 125781454 -26755805 - B2_Mm2 SINE B2 0 195 51 5 1544 1338 122 5 11 chr5 125781454 125781645 -26755614 - B2_Mm1t SINE B2 -3 190 1 5 1544 530 248 135 8 chr5 125782153 125782279 -26754980 - RSINE1 SINE B4 -21 144 3 5 1544 1118 72 114 0 chr5 125782323 125782489 -26754770 + B2_Mm2 SINE B2 2 186 -9 5 1544 646 186 78 0 chr5 125782509 125782638 -26754621 + B1_Mur2 SINE Alu 9 147 -2 5 1544 22 0 0 0 chr5 125782650 125782672 -26754587 + AT_rich Low_complexity Low_complexity 1 22 0 5 1544 322 298 57 50 chr5 125783913 125784072 -26753187 - MIRb SINE MIR -14 254 95 5 1544 471 119 4 7 chr5 125784091 125784176 -26753083 - B1_Mus1 SINE Alu -35 85 2 5 1544 312 321 44 44 chr5 125784176 125784246 -26753013 - B4A SINE B4 -207 85 16 5 1544 532 222 27 21 chr5 125784840 125785003 -26752256 + ORR1C2 LTR MaLR 1 146 -248 5 1544 1204 217 3 98 chr5 125785030 125785347 -26751912 + ORR1C2 LTR MaLR 95 381 -3 5 1544 267 190 19 29 chr5 125785440 125785543 -26751716 + (TTCA)n Simple_repeat Simple_repeat 3 104 0 5 1544 203 158 0 0 chr5 125785655 125785693 -26751566 + G-rich Low_complexity Low_complexity 1 38 0 5 1544 384 299 0 53 chr5 125785830 125785943 -26751316 + PB1D10 SINE Alu 3 109 -8 5 1544 697 272 30 78 chr5 125786479 125786750 -26750509 + Lx8 LINE L1 6547 6804 -669 5 1544 239 274 88 142 chr5 125786730 125786813 -26750446 + Lx8 LINE L1 7279 7351 -122 5 1544 613 220 0 33 chr5 125786813 125786935 -26750324 + PB1D9 SINE Alu 3 120 0 5 1544 239 274 88 142 chr5 125786935 125787055 -26750204 + Lx8 LINE L1 7352 7471 -2 5 1544 332 256 11 23 chr5 125787090 125787178 -26750081 + ID_B1 SINE B4 10 96 -128 5 1544 366 248 29 0 chr5 125787178 125787211 -26750048 + ID4_ SINE ID 10 139 -13 5 1544 272 307 19 38 chr5 125787233 125787338 -26749921 + PB1D10 SINE Alu 15 117 0 5 1544 662 239 25 0 chr5 125787589 125787748 -26749511 + ID_B1 SINE B4 61 223 -1 5 1544 845 180 80 7 chr5 125787922 125788073 -26749186 - RSINE1 SINE B4 -1 164 3 5 1544 350 289 0 12 chr5 125788383 125788467 -26748792 - ID_B1 SINE B4 -39 185 103 5 1544 295 319 0 69 chr5 125788393 125788494 -26748765 - PB1D10 SINE Alu -23 94 1 5 1544 371 200 13 0 chr5 125788551 125788626 -26748633 + B3A SINE B2 1 76 -122 5 1544 510 61 0 0 chr5 125788636 125788702 -26748557 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1544 361 281 61 9 chr5 125789217 125789332 -26747927 + RSINE1 SINE B4 27 147 -18 5 1544 871 212 50 36 chr5 125789943 125790163 -26747096 + B4 SINE B4 5 227 -65 5 1544 815 196 7 14 chr5 125790162 125790319 -26746940 + B3 SINE B2 10 163 -53 5 1544 234 62 0 0 chr5 125790319 125790351 -26746908 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1544 509 226 39 117 chr5 125790351 125790373 -26746886 + B2_Mm2 SINE B2 161 175 -20 5 1544 561 209 67 7 chr5 125791704 125791839 -26745420 + B1_Mus1 SINE Alu 1 143 -5 5 1544 463 128 0 23 chr5 125791839 125791927 -26745332 + GA-rich Low_complexity Low_complexity 2 87 0 5 1544 509 148 0 0 chr5 125792123 125792204 -26745055 + B3 SINE B2 3 83 -133 5 1544 1192 115 54 5 chr5 125792275 125792459 -26744800 + B2_Mm2 SINE B2 2 194 -1 5 1544 304 323 0 0 chr5 125792728 125792821 -26744438 + L1M5 LINE L1 5458 5550 -623 5 1544 372 43 0 0 chr5 125793694 125793740 -26743519 + (CATA)n Simple_repeat Simple_repeat 3 48 0 5 1544 641 231 67 24 chr5 125793741 125793990 -26743269 - MTEb LTR MaLR -39 340 20 5 1544 206 81 27 0 chr5 125794273 125794310 -26742949 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 5 1544 235 303 39 26 chr5 125794908 125794986 -26742273 + B1F SINE Alu 13 91 -58 5 1544 253 209 256 0 chr5 125795142 125795228 -26742031 - B1F SINE Alu -4 145 38 5 1544 651 154 43 0 chr5 125795970 125796087 -26741172 - B1_Mus2 SINE Alu -13 134 13 5 1544 351 305 50 43 chr5 125796087 125796131 -26741128 - ID_B1 SINE B4 -13 211 50 5 1544 275 250 25 62 chr5 125796383 125796464 -26740795 + PB1D10 SINE Alu 28 105 -12 5 1544 279 79 0 0 chr5 125796467 125796505 -26740754 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 5 1544 744 221 35 45 chr5 125796577 125796776 -26740483 - B3A SINE B2 0 198 2 5 1544 240 319 24 101 chr5 125798277 125798320 -26738939 - B2_Mm2 SINE B2 -1 194 2 5 1544 644 288 6 36 chr5 125798320 125798486 -26738773 - RSINE1 SINE B4 -2 163 3 5 1544 502 99 99 0 chr5 125798948 125799029 -26738230 - B1_Mus1 SINE Alu -59 89 1 5 1544 563 237 97 70 chr5 125799218 125799445 -26737814 + MTD LTR MaLR 7 239 -180 5 1544 421 150 37 12 chr5 125799960 125800041 -26737218 - ID_B1 SINE B4 -32 192 110 5 1544 258 231 0 71 chr5 125800211 125800281 -26736978 + B4A SINE B4 81 145 -147 5 1544 534 223 0 10 chr5 125800227 125800331 -26736928 + PB1D10 SINE Alu 7 109 -8 6 1544 759 196 135 16 chr5 125800385 125800577 -26736682 + B3 SINE B2 1 215 -1 6 1544 183 80 0 0 chr5 125800621 125800646 -26736613 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 6 1544 331 327 18 0 chr5 125801042 125801152 -26736107 - ID_B1 SINE B4 -109 115 4 6 1544 690 226 24 112 chr5 125801254 125801503 -26735756 + B4A SINE B4 3 229 -63 6 1544 1299 85 20 41 chr5 125801505 125801701 -26735558 + B2_Mm1a SINE B2 2 193 0 6 1544 216 0 0 0 chr5 125801701 125801725 -26735534 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 6 1544 200 191 32 11 chr5 125801804 125801899 -26735360 + (TA)n Simple_repeat Simple_repeat 1 97 0 6 1544 813 177 0 8 chr5 125801908 125802039 -26735220 + B1_Mur1 SINE Alu 4 133 -16 6 1544 255 190 0 0 chr5 125802163 125802221 -26735038 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1544 315 221 0 0 chr5 125802709 125802795 -26734464 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 1544 1169 49 0 20 chr5 125802863 125803010 -26734249 - B1_Mus1 SINE Alu -3 145 2 6 1544 284 222 0 16 chr5 125803122 125803186 -26734073 - RMER15 LTR ERVL -154 421 359 6 1544 197 348 53 18 chr5 125803682 125803796 -26733463 - MIR SINE MIR -139 123 6 6 1544 301 295 60 35 chr5 125804146 125804246 -26733013 + PB1D7 SINE Alu 2 108 -12 6 1544 180 0 0 0 chr5 125804246 125804266 -26732993 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1544 301 295 60 35 chr5 125804266 125804281 -26732978 + PB1D7 SINE Alu 109 120 0 6 1544 232 253 147 0 chr5 125805193 125805268 -26731991 + PB1D10 SINE Alu 12 97 -20 6 1544 224 245 20 0 chr5 125805298 125805347 -26731912 + RSINE1 SINE B4 3 52 -113 6 1544 225 0 0 0 chr5 125805390 125805415 -26731844 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 6 1544 766 243 41 31 chr5 125805420 125805615 -26731644 + B3A SINE B2 2 198 0 6 1544 300 190 0 0 chr5 125806267 125806325 -26730934 - MIRm SINE MIR -149 127 70 6 1544 1098 107 7 0 chr5 125807058 125807207 -26730052 + B1_Mur4 SINE Alu 1 150 0 6 1544 533 227 70 8 chr5 125807230 125807359 -26729900 + RSINE1 SINE B4 3 139 -26 6 1544 500 259 0 0 chr5 125807433 125807541 -26729718 + PB1D9 SINE Alu 2 109 -11 6 1544 369 0 0 0 chr5 125807541 125807582 -26729677 + (TAA)n Simple_repeat Simple_repeat 2 42 0 6 1544 942 139 20 27 chr5 125807624 125807772 -26729487 + B1_Mur3 SINE Alu 3 149 0 6 1544 226 214 88 18 chr5 125808097 125808154 -26729105 + MLT1K LTR MaLR 195 255 -340 6 1544 623 270 25 25 chr5 125808241 125808404 -26728855 - RSINE1 SINE B4 -1 164 2 6 1544 434 270 45 0 chr5 125808406 125808517 -26728742 - ID_B1 SINE B4 -28 196 81 6 1544 1255 48 0 0 chr5 125809198 125809345 -26727914 + B1_Mus1 SINE Alu 2 148 0 6 1544 410 34 0 33 chr5 125809346 125809407 -26727852 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 6 1544 413 180 0 8 chr5 125809949 125810078 -26727181 + (TG)n Simple_repeat Simple_repeat 2 129 0 6 1544 192 232 0 0 chr5 125810097 125810196 -26727063 + (TG)n Simple_repeat Simple_repeat 2 100 0 6 1544 664 254 85 47 chr5 125810197 125810219 -26727040 - B4 SINE B4 0 292 271 6 1544 204 40 0 0 chr5 125810219 125810244 -26727015 + (TC)n Simple_repeat Simple_repeat 2 26 0 6 1544 303 93 0 0 chr5 125810244 125810286 -26726973 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1544 664 254 85 47 chr5 125810286 125810497 -26726762 - B4 SINE B4 -22 270 50 6 1544 187 232 100 14 chr5 125810728 125810798 -26726461 - L2a LINE L2 -39 3387 3312 6 1544 294 250 83 37 chr5 125811952 125812060 -26725199 - PB1D10 SINE Alu 0 117 5 6 1544 1787 172 73 45 chr5 125812127 125812552 -26724707 + RMER10A LTR ERVL 1 437 -5 6 1544 263 93 23 0 chr5 125812552 125812595 -26724664 + (TC)n Simple_repeat Simple_repeat 1 44 0 6 1544 646 173 237 23 chr5 125814442 125814619 -26722640 + B3 SINE B2 2 216 0 6 1544 884 100 0 23 chr5 125814643 125814776 -26722483 - B1_Mus1 SINE Alu -8 140 11 6 1544 1916 166 3 21 chr5 125815455 125815544 -26721715 + MTC LTR MaLR 1 86 -335 6 1544 180 0 0 0 chr5 125815544 125815564 -26721695 + (G)n Simple_repeat Simple_repeat 1 20 0 6 1544 1581 58 0 5 chr5 125815564 125815756 -26721503 + B2_Mm2 SINE B2 5 195 0 6 1544 1916 166 3 21 chr5 125815756 125816004 -26721255 + MTC LTR MaLR 87 332 -89 6 1544 473 243 64 7 chr5 125816097 125816238 -26721021 + RSINE1 SINE B4 16 164 -1 6 1544 938 159 59 39 chr5 125816287 125816490 -26720769 + B3 SINE B2 10 216 0 6 1544 544 139 87 19 chr5 125816660 125816763 -26720496 - PB1D9 SINE Alu -2 118 9 6 1544 396 0 0 0 chr5 125816792 125816836 -26720423 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1544 357 213 13 51 chr5 125816847 125816926 -26720333 - ID4_ SINE ID -3 80 5 6 1544 227 133 22 0 chr5 125816934 125816979 -26720280 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 6 1544 525 202 0 85 chr5 125816984 125817114 -26720145 - PB1D9 SINE Alu -1 119 1 6 1544 275 209 87 127 chr5 125817128 125817254 -26720005 - B1F SINE Alu -13 136 16 6 1544 513 219 83 107 chr5 125818147 125818316 -26718943 + B4A SINE B4 1 165 -127 6 1544 653 283 9 54 chr5 125818298 125818522 -26718737 + B4A SINE B4 57 270 -22 6 1544 211 348 29 0 chr5 125818556 125818625 -26718634 + (CATG)n Simple_repeat Simple_repeat 3 73 0 6 1544 609 220 91 0 chr5 125818668 125818800 -26718459 + B1_Mur2 SINE Alu 1 144 -5 6 1544 204 179 0 0 chr5 125818814 125818853 -26718406 + GA-rich Low_complexity Low_complexity 2 40 0 6 1544 226 370 11 21 chr5 125818899 125818993 -26718266 + B4A SINE B4 41 133 -159 6 1544 243 0 0 0 chr5 125819045 125819072 -26718187 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1544 387 0 0 0 chr5 125819117 125819160 -26718099 + (TC)n Simple_repeat Simple_repeat 2 44 0 6 1544 307 200 0 0 chr5 125819220 125819280 -26717979 - ID4 SINE ID -22 61 2 6 1544 315 0 0 0 chr5 125819371 125819406 -26717853 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1544 342 0 0 0 chr5 125822257 125822295 -26714964 + (A)n Simple_repeat Simple_repeat 1 38 0 6 1544 1097 194 0 5 chr5 125822675 125822877 -26714382 + B3 SINE B2 9 209 -7 6 1544 367 229 70 44 chr5 125822905 125823019 -26714240 + B4 SINE B4 106 222 -70 6 1544 361 247 12 0 chr5 125823726 125823811 -26713448 + ID_B1 SINE B4 85 170 -54 6 1544 360 282 36 9 chr5 125823811 125823837 -26713422 + PB1D10 SINE Alu 4 117 0 6 1544 342 264 57 16 chr5 125823837 125823960 -26713299 + RSINE1 SINE B4 3 130 -35 6 1544 652 271 13 0 chr5 125824056 125824240 -26713019 - B3 SINE B2 0 198 6 6 1544 233 57 0 0 chr5 125824286 125824321 -26712938 + RSINE1 SINE B4 93 127 -38 6 1544 562 214 134 22 chr5 125824349 125824483 -26712776 + B1_Mur2 SINE Alu 1 149 0 6 1544 1170 52 0 0 chr5 125824485 125824621 -26712638 + B1_Mus1 SINE Alu 1 136 -12 6 1544 257 0 30 0 chr5 125824625 125824658 -26712601 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1544 1935 190 73 13 chr5 125825084 125825479 -26711780 - MTD LTR MaLR 0 419 1 6 1544 309 26 0 0 chr5 125825483 125825521 -26711738 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1544 347 236 117 9 chr5 125825614 125825725 -26711534 + B1F SINE Alu 18 140 -9 6 1544 477 0 0 0 chr5 125825940 125825993 -26711266 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1544 1267 27 0 7 chr5 125826367 125826515 -26710744 + B1_Mus2 SINE Alu 1 147 0 6 1544 33 0 0 0 chr5 125826515 125826548 -26710711 + AT_rich Low_complexity Low_complexity 1 33 0 6 1544 1363 82 38 0 chr5 125826551 125826734 -26710525 + B2_Mm1t SINE B2 1 190 -3 6 1544 536 194 0 0 chr5 125826734 125826827 -26710432 - PB1D9 SINE Alu -22 98 6 6 1544 319 279 42 59 chr5 125826827 125826852 -26710407 - B4 SINE B4 -105 187 72 6 1544 32 43 0 0 chr5 125826862 125826908 -26710351 + AT_rich Low_complexity Low_complexity 1 46 0 6 1544 252 143 0 0 chr5 125826908 125826950 -26710309 + (CATA)n Simple_repeat Simple_repeat 3 44 0 6 1544 215 239 386 34 chr5 125826965 125827105 -26710154 + L2c LINE L2 2855 3082 -337 6 1544 343 311 75 0 chr5 125827516 125827622 -26709637 + PB1D7 SINE Alu 2 115 -5 6 1544 767 70 43 19 chr5 125827674 125827835 -26709424 + (TG)n Simple_repeat Simple_repeat 1 165 0 6 1544 590 90 0 10 chr5 125827887 125827988 -26709271 + Lx LINE L1 6555 6654 0 6 1544 374 57 0 19 chr5 125828055 125828109 -26709150 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 6 1544 1186 58 0 0 chr5 125828203 125828342 -26708917 + B1_Mus1 SINE Alu 1 139 -9 6 1544 358 204 337 0 chr5 125828383 125828481 -26708778 + B1_Mur2 SINE Alu 1 131 -18 6 1544 634 220 34 34 chr5 125828890 125829069 -26708190 + B3A SINE B2 16 194 -4 6 1545 450 88 0 0 chr5 125829388 125829456 -26707803 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1545 960 218 76 0 chr5 125829468 125829665 -26707594 - B3 SINE B2 -3 213 2 6 1545 305 200 64 43 chr5 125830164 125830258 -26707001 - PB1D7 SINE Alu -2 118 23 6 1545 531 316 158 16 chr5 125830668 125830922 -26706337 + MTE2b LTR MaLR 39 328 -51 6 1545 694 54 0 11 chr5 125830921 125831015 -26706244 - B2_Mm2 SINE B2 -101 94 2 6 1545 195 125 0 0 chr5 125831023 125831063 -26706196 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 6 1545 1233 48 0 0 chr5 125831063 125831208 -26706051 - B1_Mm SINE Alu -1 146 2 6 1545 246 207 0 65 chr5 125831210 125831272 -26705987 + MTE2b LTR MaLR 313 370 -9 6 1545 579 210 0 53 chr5 125831308 125831439 -26705820 - B1_Mur4 SINE Alu -3 147 24 6 1545 225 269 0 0 chr5 125831846 125831898 -26705361 - ID4_ SINE ID -27 56 5 7 1545 649 144 46 92 chr5 125831914 125832067 -26705192 - B1_Mus2 SINE Alu 0 147 2 7 1545 237 132 0 0 chr5 125832078 125832116 -26705143 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1545 313 206 209 0 chr5 125832124 125832201 -26705058 - B1F SINE Alu -8 112 20 7 1545 986 46 122 0 chr5 125832257 125832388 -26704871 - B1_Mus1 SINE Alu 0 148 2 7 1545 309 295 54 27 chr5 125832455 125832605 -26704654 + MLT1L LTR MaLR 90 248 -362 7 1545 420 208 62 54 chr5 125832615 125832727 -26704532 + PB1D9 SINE Alu 1 113 -7 7 1545 694 188 94 35 chr5 125833343 125833514 -26703745 + B3A SINE B2 3 183 -15 7 1545 948 111 14 14 chr5 125833689 125833835 -26703424 - B1_Mur4 SINE Alu 0 150 5 7 1545 373 235 53 120 chr5 125833718 125833868 -26703391 - MT2B LTR ERVL -323 278 139 7 1545 2587 149 12 12 chr5 125833851 125834264 -26702995 - MTC LTR MaLR -8 413 1 7 1545 221 243 93 67 chr5 125834312 125834387 -26702872 + B1F1 SINE Alu 15 91 -58 7 1545 420 288 0 26 chr5 125834390 125834504 -26702755 + PB1D9 SINE Alu 9 119 -1 7 1545 382 283 190 36 chr5 125834679 125834932 -26702327 - B4 SINE B4 0 292 1 7 1545 229 89 0 43 chr5 125835777 125835824 -26701435 + (GGGA)n Simple_repeat Simple_repeat 2 46 0 7 1545 378 0 0 0 chr5 125836114 125836156 -26701103 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1545 1042 121 25 0 chr5 125836849 125837006 -26700253 - URR1B DNA MER1_type -17 208 48 7 1545 427 280 63 111 chr5 125836852 125837105 -26700154 + CYRA11_Mm Unknown Y-chromosome 191 431 -186 7 1545 635 221 14 20 chr5 125837117 125837265 -26699994 - B1_Mus1 SINE Alu 0 148 2 7 1545 572 235 8 0 chr5 125837286 125837405 -26699854 - ID_B1 SINE B4 -2 222 103 7 1545 640 150 325 7 chr5 125837413 125837567 -26699692 + URR1A DNA MER1_type 1 203 -23 7 1545 351 235 131 52 chr5 125837564 125837725 -26699534 + MT2B LTR ERVL 158 287 -314 7 1545 630 114 162 26 chr5 125837643 125837760 -26699499 + B1_Mm SINE Alu 7 139 -8 7 1545 387 0 0 0 chr5 125837760 125837803 -26699456 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1545 279 191 21 0 chr5 125837829 125837876 -26699383 - ID SINE ID -140 84 37 7 1545 243 0 0 0 chr5 125837922 125837949 -26699310 + (T)n Simple_repeat Simple_repeat 1 27 0 7 1545 1231 48 7 0 chr5 125837949 125838095 -26699164 - B1_Mus2 SINE Alu 0 147 1 7 1545 306 0 0 0 chr5 125838223 125838257 -26699002 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1545 709 233 90 90 chr5 125838356 125838578 -26698681 - B4A SINE B4 -66 226 5 7 1545 217 222 0 0 chr5 125838959 125839004 -26698255 + B3A SINE B2 1 45 -153 7 1545 830 164 20 46 chr5 125839072 125839198 -26698061 + B1_Mur2 SINE Alu 1 124 -25 7 1545 333 0 0 0 chr5 125839198 125839235 -26698024 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1545 830 164 20 46 chr5 125839235 125839261 -26697998 + B1_Mur2 SINE Alu 125 148 -1 7 1545 723 175 268 6 chr5 125839278 125839460 -26697799 - B3 SINE B2 -4 212 9 7 1545 906 48 186 0 chr5 125839475 125839599 -26697660 - B1_Mus2 SINE Alu 0 147 1 7 1545 1092 174 36 21 chr5 125839622 125839816 -26697443 - B3 SINE B2 -6 210 14 7 1545 333 235 26 121 chr5 125839825 125839941 -26697318 + MT2B LTR ERVL 160 264 -337 7 1545 923 116 0 0 chr5 125839837 125839966 -26697293 + B1_Mur4 SINE Alu 12 140 -10 7 1545 246 62 0 0 chr5 125839966 125839998 -26697261 + (CAA)n Simple_repeat Simple_repeat 2 33 0 7 1545 295 173 19 0 chr5 125840195 125840247 -26697012 + RSINE1 SINE B4 68 120 -45 7 1545 358 300 0 48 chr5 125840314 125840419 -26696840 + PB1D10 SINE Alu 3 102 -15 7 1545 246 62 0 0 chr5 125840419 125840451 -26696808 + (CATATA)n Simple_repeat Simple_repeat 1 32 0 7 1545 561 194 17 17 chr5 125840463 125840641 -26696618 + (TA)n Simple_repeat Simple_repeat 2 179 0 7 1545 1180 62 7 0 chr5 125840646 125840791 -26696468 + B1_Mus1 SINE Alu 2 147 -1 7 1545 224 203 34 0 chr5 125840796 125840855 -26696404 + (TA)n Simple_repeat Simple_repeat 2 62 0 7 1545 730 275 0 12 chr5 125840856 125841018 -26696241 - RSINE1 SINE B4 -4 161 2 7 1545 279 297 78 151 chr5 125841296 125841641 -26695618 + MTEa LTR MaLR 24 343 -36 7 1545 365 281 208 5 chr5 125841674 125841871 -26695388 + L1MB2 LINE L1 5667 5903 -268 7 1545 1429 70 32 0 chr5 125841875 125842062 -26695197 + B2_Mm1a SINE B2 1 193 0 7 1545 1280 257 32 78 chr5 125842076 125842511 -26694748 + Lx5 LINE L1 6636 7050 0 7 1545 1362 85 11 0 chr5 125842520 125842696 -26694563 - B2_Mm1t SINE B2 -14 179 2 7 1545 186 43 0 0 chr5 125842775 125842798 -26694461 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1545 543 188 9 44 chr5 125842900 125843026 -26694233 - B1_Mur1 SINE Alu -2 147 4 7 1545 951 83 119 15 chr5 125843474 125843608 -26693651 - B1_Mur3 SINE Alu 0 149 2 7 1545 318 240 0 47 chr5 125843715 125843806 -26693453 + B3A SINE B2 4 88 -107 7 1545 773 195 120 78 chr5 125843881 125844027 -26693232 - URR1A DNA MER1_type 0 226 95 7 1545 1138 52 0 0 chr5 125844027 125844163 -26693096 + B1_Mus1 SINE Alu 1 136 -12 7 1545 186 43 0 0 chr5 125844164 125844187 -26693072 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1545 773 195 120 78 chr5 125844187 125844255 -26693004 - URR1A DNA MER1_type -132 94 1 7 1545 277 230 58 0 chr5 125844303 125844390 -26692869 - L1MB3 LINE L1 -100 6083 5992 7 1545 1255 231 164 15 chr5 125844671 125845021 -26692238 - MTD LTR MaLR -15 404 18 7 1545 877 218 3 3 chr5 125845691 125846012 -26691247 + CT-rich Low_complexity Low_complexity 1 321 0 7 1545 325 215 22 122 chr5 125846012 125846102 -26691157 - PB1D9 SINE Alu 0 120 40 7 1545 243 88 0 0 chr5 125846173 125846207 -26691052 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 7 1545 1297 62 0 0 chr5 125846207 125846367 -26690892 - B2_Mm1a SINE B2 -33 160 1 7 1545 1102 192 15 15 chr5 125846488 125846694 -26690565 + B3 SINE B2 11 216 0 7 1545 1682 21 5 0 chr5 125846703 125846894 -26690365 + B2_Mm1t SINE B2 1 192 -1 7 1545 1397 75 32 0 chr5 125846916 125847103 -26690156 - B2_Mm2 SINE B2 -2 193 1 7 1545 247 140 0 0 chr5 125847127 125847177 -26690082 - B3 SINE B2 0 216 167 7 1545 658 170 0 0 chr5 125847189 125847295 -26689964 - B3 SINE B2 -109 107 2 7 1545 1364 182 0 0 chr5 125847323 125847537 -26689722 + B3 SINE B2 1 214 -2 7 1545 537 44 0 0 chr5 125847681 125847749 -26689510 + (GA)n Simple_repeat Simple_repeat 2 69 0 7 1545 1404 79 5 36 chr5 125847839 125848035 -26689224 + B2_Mm1a SINE B2 2 191 -2 7 1545 472 252 11 52 chr5 125848050 125848178 -26689081 + PB1D7 SINE Alu 7 123 -24 7 1545 25 0 0 0 chr5 125848183 125848208 -26689051 + GC_rich Low_complexity Low_complexity 1 25 0 7 1545 644 210 43 14 chr5 125848376 125848516 -26688743 - B1_Mur4 SINE Alu -6 144 1 7 1545 259 265 14 14 chr5 125848545 125848614 -26688645 - PB1D10 SINE Alu -1 116 48 7 1545 874 114 30 0 chr5 125848904 125849035 -26688224 - B1_Mur4 SINE Alu 0 150 16 7 1545 417 169 0 110 chr5 125848947 125849047 -26688212 - MT2B LTR ERVL -344 257 169 7 1545 180 77 0 0 chr5 125849047 125849073 -26688186 + (TC)n Simple_repeat Simple_repeat 2 27 0 7 1545 333 0 0 0 chr5 125849075 125849112 -26688147 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1545 731 159 0 70 chr5 125849293 125849435 -26687824 + B1_Mur1 SINE Alu 2 133 -16 7 1545 333 0 0 0 chr5 125849438 125849475 -26687784 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1545 1752 16 0 0 chr5 125850098 125850291 -26686968 + B2_Mm1t SINE B2 1 193 0 7 1545 360 282 12 0 chr5 125850502 125850587 -26686672 - B1F1 SINE Alu -52 97 12 7 1545 2134 103 45 10 chr5 125850591 125850905 -26686354 + ORR1A4 LTR MaLR 5 329 0 7 1545 186 43 0 0 chr5 125851089 125851112 -26686147 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 7 1545 486 288 19 88 chr5 125851117 125851277 -26685982 - RSINE1 SINE B4 -14 151 3 7 1545 1304 92 0 32 chr5 125851812 125852002 -26685257 + B2_Mm2 SINE B2 3 186 -9 7 1545 1084 120 44 0 chr5 125852145 125852303 -26684956 + B2_Mm2 SINE B2 6 170 -25 7 1545 481 311 0 0 chr5 125852798 125852904 -26684355 + RSINE1 SINE B4 3 108 -57 7 1545 195 42 0 0 chr5 125852916 125852940 -26684319 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1545 863 74 43 0 chr5 125853199 125853362 -26683897 + (TAGA)n Simple_repeat Simple_repeat 3 172 0 7 1545 720 260 69 13 chr5 125853362 125853551 -26683708 + ID_B1 SINE B4 66 262 -30 7 1545 704 232 157 73 chr5 125853535 125853809 -26683450 + MTEa LTR MaLR 58 354 -25 7 1545 1220 68 0 0 chr5 125853812 125853959 -26683300 - B1_Mus1 SINE Alu 0 148 2 7 1545 453 222 50 20 chr5 125854060 125854161 -26683098 - B3A SINE B2 -94 104 1 7 1545 717 221 31 0 chr5 125854161 125854286 -26682973 - B1_Mur4 SINE Alu -3 147 19 7 1545 2337 182 118 63 chr5 125854286 125854537 -26682722 + RLTR17 LTR ERVK 1 248 -444 7 1545 4254 35 91 2 chr5 125854537 125855055 -26682204 - LTRIS2 LTR ERV1 0 564 1 7 1545 2337 182 118 63 chr5 125855055 125855389 -26681870 + RLTR17 LTR ERVK 249 618 -74 7 1545 904 235 66 0 chr5 125855517 125855713 -26681546 - B3 SINE B2 -3 213 5 7 1545 545 199 8 47 chr5 125855718 125855851 -26681408 - B1F1 SINE Alu -17 131 5 7 1545 281 75 56 18 chr5 125855848 125855904 -26681355 + MTEa LTR MaLR 317 379 0 7 1545 327 328 92 8 chr5 125855919 125856039 -26681220 + MER20 DNA MER1_type 51 180 -39 7 1545 669 315 12 0 chr5 125856251 125856413 -26680846 + B3 SINE B2 1 164 -52 7 1545 3375 33 5 10 chr5 125856521 125856919 -26680340 + MTA_Mm LTR MaLR 1 396 0 8 1545 1206 68 0 0 chr5 125856992 125857139 -26680120 - B1_Mus1 SINE Alu 0 148 2 8 1545 348 302 57 0 chr5 125857140 125857246 -26680013 - B3 SINE B2 -2 214 103 8 1545 401 253 46 0 chr5 125857240 125857327 -26679932 - B2_Mm2 SINE B2 -104 91 1 8 1545 338 274 84 0 chr5 125857328 125857423 -26679836 + PB1D9 SINE Alu 13 115 -5 8 1545 238 274 14 0 chr5 125857435 125857508 -26679751 + GA-rich Low_complexity Low_complexity 1 74 0 8 1545 1360 68 0 22 chr5 125858067 125858247 -26679012 + B2_Mm2 SINE B2 1 176 -19 8 1545 1078 102 7 0 chr5 125858261 125858408 -26678851 + B1_Mus1 SINE Alu 1 148 0 8 1545 416 245 72 72 chr5 125858432 125858642 -26678617 + Lx9 LINE L1 6120 6328 -1316 8 1545 1251 55 0 0 chr5 125858642 125858788 -26678471 - B1_Mus2 SINE Alu 0 147 2 8 1545 416 245 72 72 chr5 125858788 125858841 -26678418 + Lx9 LINE L1 6329 6383 -1261 8 1545 1167 228 91 22 chr5 125858841 125859205 -26678054 - RMER17C LTR ERVK -21 389 1 8 1545 1755 194 28 20 chr5 125859205 125859557 -26677702 + Lx9 LINE L1 6389 6743 -901 8 1545 1915 226 60 15 chr5 125859559 125860039 -26677220 + RMER20A LTR ERVK 3 504 -12 8 1545 536 176 54 78 chr5 125860039 125860103 -26677156 + Lx9 LINE L1 6745 6808 -836 8 1545 1446 79 11 0 chr5 125860103 125860293 -26676966 + B2_Mm1t SINE B2 2 193 0 8 1545 536 176 54 78 chr5 125860293 125860357 -26676902 + Lx9 LINE L1 6809 6870 -774 8 1545 390 272 103 58 chr5 125860592 125860748 -26676511 - RSINE1 SINE B4 0 165 3 8 1545 812 136 30 8 chr5 125860780 125860913 -26676346 - B1_Mur2 SINE Alu -1 148 13 8 1545 568 219 7 52 chr5 125860913 125860934 -26676325 - ID_B1 SINE B4 -1 223 77 8 1545 414 0 0 0 chr5 125860942 125860988 -26676271 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1545 641 277 26 6 chr5 125860997 125861153 -26676106 - B3A SINE B2 -38 160 2 8 1545 546 228 0 17 chr5 125861167 125861287 -26675972 - B1_Mur1 SINE Alu -7 142 1 8 1545 235 242 152 81 chr5 125861202 125861301 -26675958 - MT2B LTR ERVL -341 260 155 8 1545 303 216 134 0 chr5 125861319 125861416 -26675843 - PB1D7 SINE Alu -9 111 2 8 1545 299 297 35 35 chr5 125861873 125861988 -26675271 - ID_B1 SINE B4 -85 139 25 8 1545 395 316 56 42 chr5 125862402 125862617 -26674642 - RMER15 LTR ERVL -7 568 351 8 1545 236 292 82 10 chr5 125862839 125862936 -26674323 + PB1D10 SINE Alu 9 112 -5 8 1545 393 147 105 13 chr5 125864032 125864108 -26673151 - B1_Mus2 SINE Alu -19 128 46 8 1545 300 325 52 0 chr5 125864282 125864359 -26672900 + B1F1 SINE Alu 21 101 -48 8 1545 1124 102 0 7 chr5 125864732 125864880 -26672379 - B1_Mus2 SINE Alu 0 147 1 8 1545 422 231 62 36 chr5 125865135 125865247 -26672012 - PB1D9 SINE Alu -1 119 5 8 1545 1299 92 32 5 chr5 125865543 125865729 -26671530 + B2_Mm2 SINE B2 2 192 -3 8 1545 359 98 0 0 chr5 125865734 125865785 -26671474 + B1_Mus2 SINE Alu 2 52 -95 8 1545 553 193 40 106 chr5 125865886 125865906 -26671353 + B1_Mus1 SINE Alu 5 17 -131 8 1545 1027 126 74 0 chr5 125865906 125866081 -26671178 - B2_Mm2 SINE B2 -6 189 2 8 1545 553 193 40 106 chr5 125866081 125866211 -26671048 + B1_Mus1 SINE Alu 18 145 -3 8 1545 218 329 47 47 chr5 125869014 125869100 -26668159 + B4A SINE B4 84 169 -123 8 1545 301 267 64 43 chr5 125869028 125869122 -26668137 + PB1D9 SINE Alu 15 110 -10 8 1545 231 280 81 114 chr5 125869172 125869261 -26667998 + B1_Mm SINE Alu 1 85 -62 8 1545 875 114 45 0 chr5 125869261 125869393 -26667866 + B1_Mus1 SINE Alu 2 139 -9 8 1545 231 280 81 114 chr5 125869393 125869452 -26667807 + B1_Mm SINE Alu 86 144 -3 8 1545 28 0 0 0 chr5 125870685 125870713 -26666546 + AT_rich Low_complexity Low_complexity 1 28 0 8 1545 618 179 19 8 chr5 125870990 125871116 -26666143 - B1_Mur3 SINE Alu 0 149 21 8 1545 293 194 145 0 chr5 125871100 125871162 -26666097 + B1_Mus2 SINE Alu 77 147 0 8 1545 233 29 29 0 chr5 125871272 125871306 -26665953 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1545 1228 61 0 0 chr5 125871306 125871454 -26665805 - B1_Mus1 SINE Alu 0 148 1 8 1545 467 259 122 58 chr5 125871512 125871684 -26665575 + B3A SINE B2 7 189 -9 8 1545 633 226 0 22 chr5 125871702 125871838 -26665421 - B1F2 SINE Alu 0 149 17 8 1545 236 310 56 98 chr5 125871710 125871853 -26665406 - B4A SINE B4 -71 221 85 8 1545 222 37 0 0 chr5 125872538 125872565 -26664694 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1545 611 136 68 60 chr5 125872574 125872707 -26664552 - B1_Mur4 SINE Alu -8 142 9 8 1545 1156 35 7 0 chr5 125872768 125872913 -26664346 - B1_Mus1 SINE Alu 0 148 3 8 1545 300 278 30 30 chr5 125872913 125872974 -26664285 - ORR1B1-int LTR MaLR -861 648 588 8 1545 285 39 0 56 chr5 125874538 125874592 -26662667 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1545 719 219 0 52 chr5 125874678 125874716 -26662543 - B1_Mus1 SINE Alu 0 148 116 8 1545 1750 170 106 24 chr5 125874716 125874917 -26662342 + RMER17C LTR ERVK 1 195 -215 8 1545 387 0 0 0 chr5 125874917 125874960 -26662299 + (TC)n Simple_repeat Simple_repeat 2 44 0 8 1545 1750 170 106 24 chr5 125874960 125875137 -26662122 + RMER17C LTR ERVK 196 409 -1 8 1545 719 219 0 52 chr5 125875137 125875252 -26662007 - B1_Mus1 SINE Alu -33 115 3 8 1545 483 262 60 27 chr5 125875441 125875590 -26661669 - B3 SINE B2 -4 212 59 8 1545 401 301 38 101 chr5 125875849 125876008 -26661251 - B1F SINE Alu 0 149 1 8 1545 982 113 7 7 chr5 125876255 125876397 -26660862 - B1_Mus1 SINE Alu -1 147 6 8 1545 1240 54 0 20 chr5 125876407 125876422 -26660837 - B1_Mus1 SINE Alu 0 148 136 8 1545 241 47 23 23 chr5 125876422 125876466 -26660793 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 8 1545 1240 54 0 20 chr5 125876466 125876601 -26660658 - B1_Mus1 SINE Alu -13 135 1 8 1545 1886 138 7 3 chr5 125876601 125876885 -26660374 - ORR1A2 LTR MaLR -42 285 1 8 1545 5436 99 92 19 chr5 125876885 125877757 -26659502 - ORR1A2-int LTR MaLR 0 1963 1029 8 1545 328 287 0 14 chr5 125877758 125877838 -26659421 + polypyrimidine Low_complexity Low_complexity 67 145 0 8 1545 1059 90 18 0 chr5 125877838 125878004 -26659255 + (TTC)n Simple_repeat Simple_repeat 1 169 0 8 1545 328 287 0 14 chr5 125878004 125878068 -26659191 + polypyrimidine Low_complexity Low_complexity 4 66 0 8 1545 903 110 23 17 chr5 125878069 125878149 -26659110 + (TCC)n Simple_repeat Simple_repeat 1 82 0 8 1545 1102 112 6 6 chr5 125878149 125878328 -26658931 + (TTC)n Simple_repeat Simple_repeat 1 179 0 8 1545 903 110 23 17 chr5 125878328 125878378 -26658881 + (TCC)n Simple_repeat Simple_repeat 2 51 0 8 1545 1055 97 17 6 chr5 125878378 125878555 -26658704 + (TTC)n Simple_repeat Simple_repeat 1 179 0 8 1545 903 110 23 17 chr5 125878555 125878599 -26658660 + (TCC)n Simple_repeat Simple_repeat 2 46 0 8 1545 931 166 11 10 chr5 125878600 125879105 -26658154 + CT-rich Low_complexity Low_complexity 1 505 0 8 1545 679 136 0 127 chr5 125879127 125879253 -26658006 + MT2B LTR ERVL 175 284 -317 8 1545 1169 167 113 23 chr5 125879215 125879516 -26657743 + ORR1A3-int LTR MaLR 718 1045 -918 8 1545 952 121 14 0 chr5 125879516 125879656 -26657603 + B1_Mus1 SINE Alu 2 143 -5 8 1545 271 0 25 25 chr5 125879660 125879700 -26657559 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 8 1545 639 68 0 0 chr5 125879700 125879788 -26657471 - RLTR31_Mur LTR ERVK -465 88 1 8 1545 1457 147 45 0 chr5 125879788 125880039 -26657220 - ORR1A2-int LTR MaLR -1700 263 1 8 1545 1743 99 34 87 chr5 125880037 125880101 -26657158 - ORR1A2 LTR MaLR -2 325 267 8 1545 1172 89 0 0 chr5 125880101 125880247 -26657012 + B1_Mus1 SINE Alu 2 147 -1 8 1545 1743 99 34 87 chr5 125880247 125880480 -26656779 - ORR1A2 LTR MaLR -61 266 44 8 1545 1254 48 0 0 chr5 125880509 125880656 -26656603 - B1_Mus1 SINE Alu 0 148 2 8 1545 328 113 30 75 chr5 125880668 125880735 -26656524 - B1_Mur4 SINE Alu -7 143 80 8 1545 288 255 118 0 chr5 125880817 125880919 -26656340 + PB1D7 SINE Alu 1 114 -6 8 1545 245 111 417 0 chr5 125880931 125881003 -26656256 + B1_Mus2 SINE Alu 48 150 0 8 1545 27 0 0 0 chr5 125881125 125881152 -26656107 + AT_rich Low_complexity Low_complexity 1 27 0 8 1545 350 0 44 0 chr5 125881190 125881235 -26656024 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 8 1545 183 42 0 0 chr5 125881532 125881556 -26655703 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1545 602 133 57 9 chr5 125881559 125881665 -26655594 + B1_Mur2 SINE Alu 30 140 -9 8 1545 602 178 9 9 chr5 125881716 125881824 -26655435 + B3 SINE B2 103 210 -6 8 1545 565 250 31 38 chr5 125882219 125882232 -26655027 + ID_B1 SINE B4 80 139 -153 8 1545 787 139 46 15 chr5 125882232 125882363 -26654896 + B1_Mur4 SINE Alu 11 145 -5 8 1545 565 250 31 38 chr5 125882363 125882382 -26654877 + ID_B1 SINE B4 140 242 -50 8 1545 243 154 30 15 chr5 125882385 125882451 -26654808 + GA-rich Low_complexity Low_complexity 1 67 0 8 1545 234 132 0 73 chr5 125882458 125882499 -26654760 + B3 SINE B2 48 85 -131 8 1545 1294 238 107 56 chr5 125882511 125882753 -26654506 - RLTR19C LTR ERVK -49 457 201 8 1545 180 0 0 0 chr5 125882753 125882773 -26654486 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 1545 1294 238 107 56 chr5 125882773 125882961 -26654298 - RLTR19C LTR ERVK -306 200 6 8 1545 605 232 47 16 chr5 125882963 125883090 -26654169 + B1_Mur1 SINE Alu 16 146 -3 8 1545 399 236 41 47 chr5 125883162 125883269 -26653990 + RMER13B LTR ERVK 1 103 -805 8 1545 374 252 60 43 chr5 125883287 125883403 -26653856 + RMER13B LTR ERVK 524 641 -1 8 1545 817 165 136 6 chr5 125883612 125883789 -26653470 + B3 SINE B2 1 200 -16 8 1545 309 44 0 0 chr5 125883789 125883826 -26653433 + B1_Mus2 SINE Alu 100 136 -11 8 1545 333 0 0 0 chr5 125883826 125883863 -26653396 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 8 1545 239 209 35 201 chr5 125883932 125883945 -26653314 + MT2B2 LTR ERVL 152 184 -400 8 1545 392 199 141 10 chr5 125883945 125884045 -26653214 + PB1D9 SINE Alu 3 116 -34 8 1545 239 209 35 201 chr5 125884045 125884076 -26653183 + MT2B2 LTR ERVL 185 271 -313 8 1545 288 0 0 0 chr5 125884130 125884162 -26653097 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 8 1545 645 53 0 0 chr5 125884616 125884691 -26652568 - tRNA-Ala-GCG tRNA tRNA 0 75 1 8 1545 21 36 0 0 chr5 125884917 125884945 -26652314 + AT_rich Low_complexity Low_complexity 1 28 0 8 1545 659 0 0 0 chr5 125885976 125886048 -26651211 - tRNA-Asp-GAY tRNA tRNA -3 72 1 8 1545 669 14 0 0 chr5 125886424 125886497 -26650762 - tRNA-Phe-TTY tRNA tRNA -3 73 1 8 1545 3394 162 48 27 chr5 125887513 125888184 -26649075 + Lx5 LINE L1 6333 7017 -33 9 1545 531 117 0 0 chr5 125888193 125888287 -26648972 + (TAGA)n Simple_repeat Simple_repeat 4 97 0 9 1545 596 117 338 35 chr5 125888289 125888431 -26648828 + B2_Mm2 SINE B2 2 186 -9 9 1545 216 0 0 0 chr5 125888539 125888563 -26648696 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1545 1054 75 0 7 chr5 125888566 125888701 -26648558 - B1_Mus1 SINE Alu -13 135 2 9 1545 424 235 206 13 chr5 125888759 125888902 -26648357 + B3 SINE B2 58 209 -7 9 1545 653 0 0 0 chr5 125889385 125889457 -26647802 - tRNA-Asp-GAY tRNA tRNA -3 72 1 9 1545 577 125 2 18 chr5 125889477 125889592 -26647667 + B1_Mus2 SINE Alu 37 148 -1 9 1545 180 125 0 0 chr5 125889594 125889626 -26647633 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1545 216 0 0 0 chr5 125889751 125889775 -26647484 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1545 598 69 0 0 chr5 125889841 125889913 -26647346 + tRNA-Ala-GCG tRNA tRNA 1 72 -3 9 1545 363 240 383 0 chr5 125890727 125890881 -26646378 + ID_B1 SINE B4 1 213 -11 9 1545 368 216 97 26 chr5 125891364 125891478 -26645781 + ID_B1 SINE B4 102 223 -1 9 1545 272 262 0 58 chr5 125891497 125891566 -26645693 + RSINE1 SINE B4 11 75 -90 9 1545 579 197 24 16 chr5 125891551 125891675 -26645584 + B1_Mur1 SINE Alu 24 148 -1 9 1545 377 274 211 9 chr5 125891846 125892170 -26645089 - Lx8 LINE L1 -376 5936 5542 9 1545 317 263 68 39 chr5 125892170 125892273 -26644986 - B1_Mm SINE Alu -41 106 1 9 1545 619 181 19 0 chr5 125892323 125892428 -26644831 - B3 SINE B2 -109 107 1 9 1545 389 266 30 23 chr5 125892463 125892594 -26644665 - B3 SINE B2 -18 198 67 9 1545 1373 218 85 11 chr5 125892854 125892870 -26644389 + RMER19A LTR ERVK 225 240 -497 9 1545 1286 34 0 0 chr5 125892870 125893017 -26644242 - B1_Mus1 SINE Alu -1 147 1 9 1545 1733 144 45 16 chr5 125893017 125893457 -26643802 + RMER19A LTR ERVK 241 737 0 9 1545 219 284 194 0 chr5 125893544 125893611 -26643648 + PB1D10 SINE Alu 1 80 -37 9 1545 913 159 7 14 chr5 125894612 125894759 -26642500 + B1_Mus1 SINE Alu 2 147 -1 9 1545 1261 47 0 0 chr5 125894764 125894912 -26642347 + B1_Mus1 SINE Alu 1 148 0 9 1545 249 170 43 0 chr5 125894943 125894990 -26642269 - PB1D10 SINE Alu -13 104 56 9 1545 650 271 58 6 chr5 125897218 125897374 -26639885 + RSINE1 SINE B4 2 165 0 9 1545 656 209 58 22 chr5 125900237 125900374 -26636885 + B1_Mur1 SINE Alu 2 143 -6 9 1545 201 39 0 0 chr5 125900499 125900525 -26636734 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 9 1545 635 163 186 8 chr5 125900529 125900653 -26636606 - B1_Mus1 SINE Alu -2 146 1 9 1545 389 246 181 8 chr5 125900698 125900825 -26636434 - RSINE1 SINE B4 -14 151 3 9 1545 189 310 87 17 chr5 125900867 125900982 -26636277 + MIRm SINE MIR 32 154 -122 9 1545 978 62 0 0 chr5 125902778 125902906 -26634353 + B2_Mm2 SINE B2 3 130 -65 9 1545 185 263 53 0 chr5 125903694 125903751 -26633508 + L2b LINE L2 3306 3365 -10 9 1545 1099 165 88 0 chr5 125904075 125904269 -26632990 + B3 SINE B2 1 211 -5 9 1545 788 208 14 7 chr5 125904302 125904447 -26632812 + B1_Mur1 SINE Alu 1 146 -3 9 1545 734 265 41 41 chr5 125907386 125907606 -26629653 - ID_B1 SINE B4 -4 220 1 9 1545 263 275 11 91 chr5 125908301 125908389 -26628870 + ID4_ SINE ID 3 83 0 9 1545 209 229 157 29 chr5 125909380 125909473 -26627786 - MIRm SINE MIR -151 125 23 9 1545 978 237 40 0 chr5 125909781 125909979 -26627280 + B3 SINE B2 1 206 -10 9 1545 265 265 219 5 chr5 125910491 125910673 -26626586 + L2a LINE L2 3021 3237 -138 9 1545 258 136 0 0 chr5 125910811 125910855 -26626404 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1545 325 219 58 58 chr5 125911789 125911876 -26625383 - MER3 DNA MER1_type -116 93 7 9 1545 535 191 187 24 chr5 125912336 125912502 -26624757 + ID_B1 SINE B4 1 193 -31 9 1545 259 246 0 0 chr5 125912574 125912631 -26624628 - MIRm SINE MIR -120 156 100 9 1545 1672 31 0 0 chr5 125912671 125912862 -26624397 - B2_Mm1a SINE B2 -1 192 2 9 1545 218 288 156 46 chr5 125913487 125913596 -26623663 - B1F SINE Alu -10 139 19 9 1545 213 39 0 0 chr5 125913625 125913651 -26623608 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 9 1545 441 250 21 0 chr5 125913652 125913748 -26623511 - PB1D7 SINE Alu -13 107 10 9 1545 195 293 96 75 chr5 125913857 125914045 -26623214 + L2a LINE L2 3190 3381 -45 9 1545 761 70 61 0 chr5 125914752 125914860 -26622399 + B1_Mus1 SINE Alu 24 138 -10 9 1545 216 0 0 0 chr5 125914860 125914884 -26622375 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9 1545 266 271 23 34 chr5 125914901 125914979 -26622280 + B3A SINE B2 110 189 -9 9 1545 498 125 0 0 chr5 125914979 125915059 -26622200 + (CA)n Simple_repeat Simple_repeat 2 81 0 9 1545 389 245 75 83 chr5 125915078 125915198 -26622061 + B1_Mur1 SINE Alu 3 121 -28 9 1545 438 206 24 81 chr5 125915148 125915300 -26621959 + MT2B LTR ERVL 105 257 -327 9 1545 674 134 75 8 chr5 125915216 125915336 -26621923 + B1_Mus2 SINE Alu 19 146 -1 9 1545 922 208 87 48 chr5 125916371 125916578 -26620681 + B3 SINE B2 1 215 -1 9 1545 258 250 13 13 chr5 125916822 125916899 -26620360 - MamRep4096 DNA hAT? -219 207 131 9 1545 425 271 107 0 chr5 125916904 125917026 -26620233 + ID_B1 SINE B4 87 221 -3 9 1545 753 126 0 0 chr5 125917185 125917328 -26619931 + (CA)n Simple_repeat Simple_repeat 2 144 0 9 1545 226 280 13 53 chr5 125917329 125917480 -26619779 + RLTR40 LTR ERVK 570 714 -103 9 1545 719 177 24 0 chr5 125917456 125917580 -26619679 - B1_Mur4 SINE Alu -8 142 16 9 1545 455 234 21 0 chr5 125917581 125917675 -26619584 + RSINE1 SINE B4 17 112 -53 9 1545 1172 68 7 0 chr5 125917683 125917829 -26619430 + B1_Mus1 SINE Alu 2 148 0 9 1545 614 311 44 0 chr5 125918055 125918238 -26619021 + B3A SINE B2 7 197 -1 9 1545 530 141 43 0 chr5 125918284 125918376 -26618883 + B1_Mur2 SINE Alu 41 136 -13 9 1545 490 234 18 0 chr5 125918489 125918600 -26618659 + PB1D9 SINE Alu 8 120 0 9 1545 1069 61 0 70 chr5 125918610 125918768 -26618491 + B1_Mus1 SINE Alu 1 147 -1 9 1545 280 241 0 0 chr5 125918884 125918938 -26618321 - B4A SINE B4 -205 87 34 9 1545 686 190 14 49 chr5 125919078 125919222 -26618037 - B1_Mur4 SINE Alu -11 139 1 9 1545 214 362 0 48 chr5 125919707 125919791 -26617468 - ID4_ SINE ID -2 81 2 9 1545 521 279 101 13 chr5 125919804 125919953 -26617306 - B3 SINE B2 -6 210 49 9 1545 1555 62 0 5 chr5 125920003 125920196 -26617063 + B2_Mm2 SINE B2 1 192 -3 9 1545 1126 65 0 0 chr5 125920208 125920346 -26616913 + B1_Mus1 SINE Alu 1 138 -10 9 1545 333 0 0 0 chr5 125920346 125920383 -26616876 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 9 1545 993 116 7 20 chr5 125920410 125920560 -26616699 + B1_Mus1 SINE Alu 1 148 0 9 1545 706 104 0 9 chr5 125920752 125920859 -26616400 - B2_Mm2 SINE B2 -89 106 1 9 1545 677 125 0 0 chr5 125920991 125921095 -26616164 - B1_Mur4 SINE Alu -5 145 42 9 1545 320 279 37 37 chr5 125921105 125921213 -26616046 - PB1D10 SINE Alu -5 112 5 9 1545 194 30 0 83 chr5 125921898 125921934 -26615325 + (CGGGG)n Simple_repeat Simple_repeat 4 36 0 9 1545 233 218 0 0 chr5 125922078 125922133 -26615126 + (CTG)n Simple_repeat Simple_repeat 1 55 0 9 1545 196 346 0 13 chr5 125922811 125922890 -26614369 + MIRc SINE MIR 37 114 -154 9 1545 739 262 94 23 chr5 125922892 125923157 -26614102 - B4 SINE B4 -8 284 1 9 1545 582 239 36 72 chr5 125923209 125923376 -26613883 - RSINE1 SINE B4 -3 162 2 9 1545 682 165 66 29 chr5 125923638 125923775 -26613484 - B1_Mur2 SINE Alu -5 144 3 9 1545 180 0 0 0 chr5 125923782 125923802 -26613457 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 9 1545 1000 124 56 11 chr5 125923806 125923985 -26613274 - B2_Mm2 SINE B2 -7 188 2 9 1545 596 243 6 77 chr5 125923991 125924147 -26613112 - B3A SINE B2 0 198 54 9 1545 556 223 18 110 chr5 125924182 125924409 -26612850 - RMER17C LTR ERVK -204 206 1 9 1545 1595 174 141 50 chr5 125924420 125924784 -26612475 - RMER4B LTR ERVK -143 442 44 9 1545 216 0 0 0 chr5 125924784 125924808 -26612451 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 9 1545 1090 66 29 0 chr5 125924810 125924947 -26612312 - B1_Mm SINE Alu -6 141 1 9 1545 1595 174 141 50 chr5 125924947 125924983 -26612276 - RMER4B LTR ERVK -542 43 2 9 1545 435 92 0 0 chr5 125925154 125925219 -26612040 + (TC)n Simple_repeat Simple_repeat 1 65 0 9 1545 238 188 42 0 chr5 125925221 125925269 -26611990 - PB1D9 SINE Alu -18 102 53 9 1545 590 234 131 75 chr5 125925261 125925460 -26611799 - B4A SINE B4 -61 231 22 9 1545 488 306 25 18 chr5 125925455 125925618 -26611641 - ID_B1 SINE B4 -60 164 1 9 1545 521 233 8 7 chr5 125926029 125926155 -26611104 + ID_B1 SINE B4 87 205 -19 9 1545 673 162 25 8 chr5 125926207 125926325 -26610934 - PB1D9 SINE Alu 0 120 1 9 1545 756 202 69 15 chr5 125926328 125926541 -26610718 - B3A SINE B2 0 216 6 9 1545 351 0 0 0 chr5 125926983 125927022 -26610237 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1545 358 206 183 19 chr5 125927033 125927137 -26610122 - RSINE1 SINE B4 -42 123 3 1 1545 444 147 0 0 chr5 125927138 125927213 -26610046 + (TC)n Simple_repeat Simple_repeat 2 76 0 1 1545 270 81 0 0 chr5 125927492 125927529 -26609730 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1545 423 0 0 0 chr5 125927661 125927708 -26609551 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1545 236 310 23 114 chr5 125927813 125927919 -26609340 + PB1 SINE Alu 1 92 -35 1 1545 324 0 0 0 chr5 125927919 125927955 -26609304 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1545 236 310 23 114 chr5 125927955 125927979 -26609280 + PB1 SINE Alu 93 118 -9 1 1545 1166 56 0 0 chr5 125928030 125928173 -26609086 + B1_Mus1 SINE Alu 1 143 -5 1 1545 248 299 117 0 chr5 125928192 125928269 -26608990 + ID_B1 SINE B4 78 163 -61 1 1545 215 222 18 18 chr5 125928269 125928324 -26608935 + RSINE1 SINE B4 21 75 -90 1 1545 21 0 0 0 chr5 125928383 125928404 -26608855 + AT_rich Low_complexity Low_complexity 1 21 0 1 1545 241 252 96 30 chr5 125928787 125928819 -26608440 - BC1_Mm scRNA scRNA -5 147 113 1 1545 935 147 0 13 chr5 125928819 125928971 -26608288 - B1_Mur4 SINE Alu 0 150 1 1 1545 241 252 96 30 chr5 125928971 125929073 -26608186 - BC1_Mm scRNA scRNA -40 112 4 1 1545 576 202 92 0 chr5 125929186 125929305 -26607954 + RLTR18B LTR ERVK 10 139 -373 1 1545 356 244 0 12 chr5 125929431 125929514 -26607745 + RLTR18B LTR ERVK 123 204 -308 1 1545 340 181 27 14 chr5 125929531 125929604 -26607655 + PB1D9 SINE Alu 46 119 -1 1 1545 861 248 28 139 chr5 125929617 125929940 -26607319 + RLTR18B LTR ERVK 223 509 -3 1 1545 240 160 40 0 chr5 125929973 125930023 -26607236 - PB1 SINE Alu -66 61 10 1 1545 266 234 0 83 chr5 125930384 125930468 -26606791 - B3 SINE B2 -56 160 84 1 1545 465 275 7 78 chr5 125930650 125930664 -26606595 - B1_Mur2 SINE Alu 0 149 136 1 1545 369 0 0 0 chr5 125930664 125930705 -26606554 + (TC)n Simple_repeat Simple_repeat 2 42 0 1 1545 243 0 0 0 chr5 125930705 125930731 -26606528 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1545 465 275 7 78 chr5 125930731 125930869 -26606390 - B1_Mur2 SINE Alu -14 135 8 1 1545 257 200 99 121 chr5 125930790 125930881 -26606378 - MT2B LTR ERVL -362 239 151 1 1545 324 0 0 0 chr5 125930912 125930948 -26606311 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1545 336 198 23 58 chr5 125930966 125931052 -26606207 - B3A SINE B2 -62 136 54 1 1545 1805 132 100 12 chr5 125931141 125931472 -26605787 - MTC LTR MaLR -59 362 3 1 1545 459 0 0 0 chr5 125931721 125931772 -26605487 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1545 426 96 0 0 chr5 125931772 125931845 -26605414 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 1 1545 310 216 17 128 chr5 125932328 125932445 -26604814 + MT2B LTR ERVL 155 258 -343 1 1545 818 136 15 0 chr5 125932346 125932478 -26604781 + B1_Mur4 SINE Alu 8 141 -9 1 1545 471 194 75 0 chr5 125933591 125933684 -26603575 + B1_Mur2 SINE Alu 3 102 -47 1 1545 216 0 0 0 chr5 125933755 125933779 -26603480 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1545 218 196 51 51 chr5 125933786 125933845 -26603414 - PB1D10 SINE Alu 0 117 59 1 1545 714 178 0 23 chr5 125933792 125933924 -26603335 - ID_B1 SINE B4 -3 221 93 1 1545 837 175 14 0 chr5 125933980 125934123 -26603136 - B1_Mur4 SINE Alu -5 145 1 1 1545 560 185 237 23 chr5 125934151 125934328 -26602931 - B3 SINE B2 -1 215 1 1 1545 933 49 122 0 chr5 125934370 125934493 -26602766 - B1_Mus1 SINE Alu -9 139 2 1 1545 482 228 0 10 chr5 125936819 125936921 -26600338 + B1F2 SINE Alu 30 130 -19 1 1545 480 223 41 13 chr5 125936924 125937047 -26600212 + B1_Mur2 SINE Alu 1 146 -3 1 1545 278 143 25 25 chr5 125937126 125937205 -26600054 + (TA)n Simple_repeat Simple_repeat 1 79 0 1 1545 581 261 84 17 chr5 125937248 125937427 -26599832 - ID_B1 SINE B4 -6 218 28 1 1545 1262 20 0 13 chr5 125937529 125937678 -26599581 + B1_Mus2 SINE Alu 1 147 0 1 1545 252 59 0 0 chr5 125937681 125937715 -26599544 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1545 270 0 0 0 chr5 125937758 125937788 -26599471 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1545 814 147 51 7 chr5 125937789 125937926 -26599333 - B1_Mur2 SINE Alu -5 144 2 1 1545 628 231 60 0 chr5 125938170 125938304 -26598955 + RSINE1 SINE B4 1 142 -23 1 1545 873 218 63 24 chr5 125938562 125938769 -26598490 - B3 SINE B2 0 216 2 1 1545 600 285 113 5 chr5 125938781 125938975 -26598284 - ID_B1 SINE B4 -7 217 3 1 1545 348 244 21 43 chr5 125939473 125939567 -26597692 + PB1D10 SINE Alu 24 115 -2 1 1545 609 184 35 9 chr5 125939672 125939787 -26597472 - PB1D9 SINE Alu 0 120 3 1 1545 933 200 64 15 chr5 125940819 125941022 -26596237 - B3 SINE B2 0 216 4 1 1545 22 0 0 0 chr5 125941029 125941051 -26596208 + AT_rich Low_complexity Low_complexity 1 22 0 1 1545 1236 113 5 75 chr5 125941051 125941251 -26596008 + B2_Mm1a SINE B2 2 187 -6 1 1545 1021 200 45 10 chr5 125941256 125941458 -26595801 - B3 SINE B2 -7 209 1 1 1545 685 257 0 20 chr5 125941472 125941623 -26595636 - B1_Mur2 SINE Alu -1 148 1 1 1545 207 0 0 0 chr5 125941647 125941670 -26595589 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1545 1188 55 0 7 chr5 125941670 125941808 -26595451 - B1_Mus1 SINE Alu -10 138 1 1 1545 1061 104 14 0 chr5 125941857 125942001 -26595258 + B1_Mm SINE Alu 2 147 0 1 1545 1245 41 7 0 chr5 125942002 125942148 -26595111 + B1_Mm SINE Alu 1 147 0 1 1545 297 223 13 7 chr5 125942200 125942285 -26594974 - B3A SINE B2 -85 131 2 1 1545 693 225 52 13 chr5 125943043 125943196 -26594063 + RSINE1 SINE B4 2 160 -5 1 1545 1395 44 33 16 chr5 125943241 125943424 -26593835 + B2_Mm2 SINE B2 2 187 -8 1 1545 300 141 43 0 chr5 125943521 125943582 -26593677 - PB1D9 SINE Alu 0 120 52 1 1545 611 26 13 0 chr5 125943801 125943878 -26593381 + (CA)n Simple_repeat Simple_repeat 2 79 0 1 1545 1233 61 0 0 chr5 125944474 125944622 -26592637 - B1_Mus1 SINE Alu 0 148 1 1 1545 1134 31 0 0 chr5 125944639 125944768 -26592491 - B1_Mm SINE Alu -18 129 1 1 1545 216 0 0 0 chr5 125944778 125944802 -26592457 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1 1545 1280 76 41 0 chr5 125944804 125944976 -26592283 - B2_Mm2 SINE B2 -16 179 1 1 1545 333 239 143 17 chr5 125945740 125945859 -26591400 + B1F2 SINE Alu 11 144 -5 1 1545 455 195 0 22 chr5 125945771 125945860 -26591399 + ID_B1 SINE B4 134 220 -4 1 1545 228 275 38 0 chr5 125946403 125946483 -26590776 + ID SINE ID 2 84 -140 1 1545 345 24 0 0 chr5 125946558 125946600 -26590659 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1545 180 0 0 0 chr5 125946600 125946619 -26590640 + (GA)n Simple_repeat Simple_repeat 1 20 0 1 1545 665 171 8 0 chr5 125946684 125946807 -26590452 + ID_B1 SINE B4 100 223 -1 1 1545 396 296 23 46 chr5 125946850 125946981 -26590278 + B1F SINE Alu 10 137 -12 1 1545 259 250 0 122 chr5 125947030 125947112 -26590147 + B3A SINE B2 9 80 -118 1 1545 510 290 7 14 chr5 125947048 125947188 -26590071 + RSINE1 SINE B4 18 156 -9 1 1545 986 35 13 27 chr5 125947251 125947400 -26589859 + (CA)n Simple_repeat Simple_repeat 1 147 0 1 1545 261 0 0 0 chr5 125947439 125947468 -26589791 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1545 849 233 64 5 chr5 125947476 125947679 -26589580 + B4A SINE B4 3 217 -75 1 1545 396 287 9 9 chr5 125948140 125948152 -26589107 + ID SINE ID 70 81 -143 1 1545 392 276 8 94 chr5 125948152 125948280 -26588979 + PB1D10 SINE Alu 1 117 0 1 1545 332 275 0 21 chr5 125948298 125948391 -26588868 + B3A SINE B2 1 91 -107 1 1545 1039 122 0 0 chr5 125948425 125948572 -26588687 - B1_Mus1 SINE Alu -1 147 1 1 1545 225 0 0 0 chr5 125948603 125948628 -26588631 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1545 460 310 31 8 chr5 125948632 125948762 -26588497 - RSINE1 SINE B4 -13 152 20 1 1545 907 105 0 0 chr5 125948821 125948954 -26588305 - B1_Mus2 SINE Alu 0 147 15 1 1545 322 309 40 81 chr5 125948824 125948972 -26588287 - B4A SINE B4 -68 224 83 1 1545 3414 149 65 22 chr5 125948990 125949779 -26587480 + RMER12 LTR ERVK 9 781 -541 1 1545 360 0 0 0 chr5 125949781 125949821 -26587438 + (TCCCC)n Simple_repeat Simple_repeat 4 43 0 1 1545 388 294 69 96 chr5 125949821 125949964 -26587295 + RMER12 LTR ERVK 1014 1143 -179 1 1545 1074 58 73 0 chr5 125949964 125950101 -26587158 - B1_Mus2 SINE Alu 0 147 1 1 1545 788 180 44 16 chr5 125950101 125950270 -26586989 + RMER12 LTR ERVK 1100 1266 -56 1 1545 489 270 0 0 chr5 125950396 125950496 -26586763 - B3 SINE B2 -116 100 1 1 1545 1108 125 23 20 chr5 125950512 125950722 -26586537 - B2_Mm2 SINE B2 0 216 9 1 1545 324 264 37 65 chr5 125950733 125950881 -26586378 - B3A SINE B2 -58 137 1 1 1545 396 0 0 0 chr5 125951546 125951590 -26585669 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1545 245 167 66 16 chr5 125951786 125951847 -26585412 - B1_Mur1 SINE Alu 0 149 86 1 1545 1215 41 7 0 chr5 125951860 125951998 -26585261 + B1_Mm SINE Alu 1 138 -9 1 1545 285 51 0 0 chr5 125951998 125952037 -26585222 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1545 681 176 173 18 chr5 125952059 125952227 -26585032 + B2_Mm2 SINE B2 1 194 -1 1 1545 376 254 0 0 chr5 125952260 125952331 -26584928 - ID4_ SINE ID -10 73 3 1 1545 679 266 158 0 chr5 125952381 125952565 -26584694 - ID_B1 SINE B4 -7 217 5 1 1545 320 146 0 35 chr5 125952664 125952721 -26584538 - B2_Mm2 SINE B2 -94 101 47 1 1545 1084 150 0 0 chr5 125952738 125952911 -26584348 - B2_Mm2 SINE B2 -22 173 1 1 1545 543 171 19 9 chr5 125952935 125953041 -26584218 + B1_Mur3 SINE Alu 37 143 -6 1 1545 518 233 144 43 chr5 125953047 125953091 -26584168 + MTD LTR MaLR 198 247 -172 1 1545 534 31 0 0 chr5 125953091 125953155 -26584104 + (TTCTC)n Simple_repeat Simple_repeat 2 65 0 1 1545 234 0 0 0 chr5 125953155 125953180 -26584079 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 1 1545 1183 76 0 0 chr5 125953180 125953325 -26583934 - B1_Mus1 SINE Alu -2 146 2 1 1545 518 233 144 43 chr5 125953325 125953466 -26583793 + MTD LTR MaLR 248 402 -17 1 1545 285 282 71 64 chr5 125953591 125953731 -26583528 + MLT1A1 LTR MaLR 10 150 -258 1 1545 1075 105 7 0 chr5 125953908 125954051 -26583208 + B1_Mus1 SINE Alu 5 148 0 1 1545 397 309 44 75 chr5 125954081 125954308 -26582951 + ID_B1 SINE B4 2 221 -3 1 1545 1079 202 25 20 chr5 125954312 125954514 -26582745 + B3 SINE B2 1 203 -13 1 1545 225 0 0 0 chr5 125954514 125954539 -26582720 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1545 849 195 7 13 chr5 125954565 125954716 -26582543 + B1_Mur4 SINE Alu 1 150 0 1 1545 251 278 0 0 chr5 125954775 125954829 -26582430 + B4 SINE B4 214 267 -25 1 1545 258 308 9 19 chr5 125955440 125955451 -26581808 - B1_Mus1 SINE Alu -21 127 117 1 1545 670 85 118 36 chr5 125955451 125955561 -26581698 - PB1D9 SINE Alu 0 120 2 1 1545 258 308 9 19 chr5 125955561 125955655 -26581604 - B1_Mus1 SINE Alu -32 116 24 1 1545 338 258 10 30 chr5 125955650 125955750 -26581509 - PB1D10 SINE Alu -15 102 5 1 1545 201 161 0 0 chr5 125955965 125955996 -26581263 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1 1545 238 341 23 45 chr5 125958114 125958246 -26579013 + MIR SINE MIR 33 161 -101 1 1545 326 238 12 36 chr5 125958450 125958533 -26578726 + PB1D7 SINE Alu 35 115 -5 1 1545 201 217 43 0 chr5 125958636 125958682 -26578577 + CT-rich Low_complexity Low_complexity 4 51 0 1 1545 270 0 0 0 chr5 125958823 125958853 -26578406 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1545 794 180 0 35 chr5 125958901 125959045 -26578214 - B1_Mur1 SINE Alu -10 139 1 1 1545 378 150 0 0 chr5 125959049 125959109 -26578150 - PB1D10 SINE Alu -46 71 12 1 1545 321 247 0 13 chr5 125959109 125959123 -26578136 - ID_B1 SINE B4 -68 152 80 1 1545 387 235 25 0 chr5 125959408 125959489 -26577770 - ID4 SINE ID 0 83 1 1 1545 459 0 0 0 chr5 125959527 125959578 -26577681 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1 1545 614 146 154 0 chr5 125959578 125959688 -26577571 - B1_Mur4 SINE Alu -5 145 19 1 1545 422 238 62 47 chr5 125959673 125959801 -26577458 - B1F SINE Alu -18 131 2 1 1545 241 299 48 88 chr5 125959675 125959822 -26577437 - MT2B LTR ERVL -314 287 147 1 193 283 284 247 0 chr5 125960164 125960326 -26576933 - MIR SINE MIR -18 244 43 1 1546 551 165 127 40 chr5 125960350 125960476 -26576783 - B1_Mus2 SINE Alu 0 147 11 1 1546 1203 41 0 33 chr5 125960523 125960673 -26576586 - B1_Mus2 SINE Alu -1 146 2 1 1546 645 284 5 66 chr5 125960679 125960890 -26576369 - B3A SINE B2 0 198 1 1 1546 327 250 26 0 chr5 125962011 125962087 -26575172 - ID2 SINE ID -1 82 5 1 1546 361 218 114 11 chr5 125962103 125962191 -26575068 - PB1 SINE Alu -4 123 27 1 1546 557 225 115 8 chr5 125962260 125962390 -26574869 + B1_Mur1 SINE Alu 1 144 -5 1 1546 277 257 14 0 chr5 125962390 125962460 -26574799 + GA-rich Low_complexity Low_complexity 1 71 0 1 1546 471 195 34 11 chr5 125962511 125962599 -26574660 + RSINE1 SINE B4 57 146 -19 1 1546 878 266 0 10 chr5 125962591 125962785 -26574474 + B3 SINE B2 14 205 -11 1 1546 293 261 14 0 chr5 125962810 125962879 -26574380 + B4 SINE B4 223 292 0 1 1546 278 244 128 0 chr5 125962888 125962966 -26574293 + B1F2 SINE Alu 1 88 -61 1 1546 351 0 0 0 chr5 125962972 125963011 -26574248 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1546 836 197 26 0 chr5 125963400 125963552 -26573707 + RSINE1 SINE B4 3 158 -7 1 1546 1264 171 9 23 chr5 125963608 125963823 -26573436 + B3 SINE B2 5 216 0 1 1546 317 304 0 0 chr5 125963827 125963906 -26573353 + PB1D10 SINE Alu 33 111 -6 1 1546 766 194 0 14 chr5 125964265 125964406 -26572853 - B1_Mur4 SINE Alu -11 139 1 1 1546 244 227 167 2 chr5 125964414 125964508 -26572751 - PB1D10 SINE Alu -5 112 5 1 1546 1688 26 0 5 chr5 125964539 125964733 -26572526 - B2_Mm1a SINE B2 0 193 1 1 1546 457 52 0 0 chr5 125965219 125965277 -26571982 - B1_Mur4 SINE Alu -11 139 82 1 1546 349 267 91 41 chr5 125965867 125965988 -26571271 + MIR SINE MIR 52 178 -84 1 1546 381 93 0 0 chr5 125966006 125966060 -26571199 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1546 202 303 12 50 chr5 125966426 125966506 -26570753 - L2a LINE L2 -56 3370 3294 1 1546 771 83 25 0 chr5 125966711 125966859 -26570400 - L1Md_F3 LINE L1 0 6584 6462 1 1546 1399 12 0 17 chr5 125966860 125967035 -26570224 + (TTTC)n Simple_repeat Simple_repeat 3 174 0 1 1546 901 128 8 0 chr5 125967069 125967202 -26570057 - B1_Mur3 SINE Alu -15 134 1 1 1546 225 65 0 0 chr5 125967924 125967955 -26569304 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1546 536 174 31 0 chr5 125968695 125968793 -26568466 + URR1A DNA MER1_type 80 180 -46 1 1546 271 333 0 27 chr5 125968815 125968926 -26568333 - PB1D10 SINE Alu -9 108 1 1 1546 657 214 23 8 chr5 125969187 125969319 -26567940 - B1_Mur1 SINE Alu -15 134 1 1 1546 23 0 0 0 chr5 125969321 125969344 -26567915 + AT_rich Low_complexity Low_complexity 1 23 0 1 1546 258 100 0 0 chr5 125969550 125969567 -26567692 + (T)n Simple_repeat Simple_repeat 1 17 0 1 1546 1704 31 0 0 chr5 125969567 125969759 -26567500 - B2_Mm1a SINE B2 0 193 2 1 1546 258 100 0 0 chr5 125969759 125969781 -26567478 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1546 218 260 0 20 chr5 125970273 125970324 -26566935 + C-rich Low_complexity Low_complexity 4 53 0 1 1546 326 231 187 0 chr5 125970517 125970608 -26566651 + PB1D7 SINE Alu 5 112 -8 1 1546 1638 27 5 0 chr5 125970643 125970831 -26566428 + B2_Mm1t SINE B2 1 189 -4 1 1546 245 29 29 0 chr5 125972170 125972204 -26565055 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1546 1183 68 14 0 chr5 125972208 125972354 -26564905 - B1_Mus1 SINE Alu 0 148 1 1 1546 297 212 51 13 chr5 125972356 125972457 -26564802 - PB1D10 SINE Alu -1 119 9 1 1546 21 36 0 0 chr5 125972533 125972561 -26564698 + AT_rich Low_complexity Low_complexity 1 28 0 1 1546 1063 96 64 35 chr5 125972564 125972737 -26564522 - B2_Mm2 SINE B2 -14 181 4 1 1546 817 194 50 0 chr5 125973736 125973890 -26563369 + URR1B DNA MER1_type 1 162 -63 1 1546 5631 59 16 2 chr5 125973890 125974688 -26562571 - RLTR13C2 LTR ERVK 0 983 1 1 1546 448 139 0 0 chr5 125974689 125974761 -26562498 + URR1A DNA MER1_type 154 225 -1 1 1546 254 349 86 32 chr5 125974855 125975115 -26562144 - L2b LINE L2 -207 3219 2957 1 1546 426 276 8 8 chr5 125975628 125975745 -26561514 - PB1D10 SINE Alu 0 117 1 1 1546 342 0 0 0 chr5 125975856 125975894 -26561365 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1546 188 103 69 0 chr5 125978963 125979021 -26558238 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 1546 717 156 48 69 chr5 125979049 125979194 -26558065 - B1_Mur3 SINE Alu -7 142 1 1 1546 433 224 10 0 chr5 125979314 125979412 -26557847 - ID_B1 SINE B4 -31 193 95 1 1546 527 150 0 115 chr5 125979441 125979554 -26557705 - ID_B1 SINE B4 -78 146 47 1 1546 669 122 0 0 chr5 125980758 125980856 -26556403 + B2_Mm2 SINE B2 47 144 -51 1 1546 924 129 85 0 chr5 125981285 125981458 -26555801 - B2_Mm2 SINE B2 0 193 2 1 1546 205 195 0 0 chr5 125981814 125981855 -26555404 + T-rich Low_complexity Low_complexity 6 46 0 1 1546 768 191 13 45 chr5 125981855 125982009 -26555250 - B1_Mur3 SINE Alu 0 149 1 1 1546 576 227 6 120 chr5 125982074 125982249 -26555010 - RSINE1 SINE B4 0 165 11 1 1546 368 157 33 78 chr5 125982260 125982350 -26554909 - PB1 SINE Alu -3 124 34 1 1546 315 0 0 0 chr5 125983687 125983722 -26553537 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1546 300 281 124 0 chr5 125984378 125984467 -26552792 + MER2 DNA MER2_type 16 115 -230 1 1546 1252 38 0 0 chr5 125985851 125986010 -26551249 + B2_Mm1a SINE B2 2 160 -33 1 1546 414 0 0 0 chr5 125986010 125986056 -26551203 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1 1546 400 39 0 0 chr5 125986057 125986108 -26551151 + B2_Mm1a SINE B2 110 160 -33 1 1546 294 29 0 0 chr5 125986108 125986143 -26551116 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 1 1546 400 39 0 0 chr5 125986143 125986194 -26551065 + B2_Mm1a SINE B2 110 160 -33 1 1546 300 53 0 0 chr5 125986194 125986232 -26551027 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 1 1546 213 325 25 0 chr5 125987002 125987082 -26550177 + ID4 SINE ID 2 83 0 1 1546 292 245 72 30 chr5 125987333 125987465 -26549794 - ORR1E LTR MaLR -11 408 254 1 1546 1044 83 0 103 chr5 125987665 125987731 -26549528 - L1_Mus1 LINE L1 0 6567 6505 1 1546 204 40 0 0 chr5 125987731 125987756 -26549503 + (TCCCG)n Simple_repeat Simple_repeat 3 27 0 1 1546 1044 83 0 103 chr5 125987756 125987864 -26549395 - L1_Mus1 LINE L1 -63 6504 6411 1 1546 243 0 0 0 chr5 125987912 125987939 -26549320 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1546 1262 41 0 0 chr5 125987955 125988102 -26549157 - B1_Mus1 SINE Alu 0 148 2 1 1546 485 200 38 0 chr5 125988103 125988208 -26549051 - ORR1E LTR MaLR -250 109 1 1 1546 22 0 0 0 chr5 125988517 125988539 -26548720 + GC_rich Low_complexity Low_complexity 1 22 0 1 1546 327 243 0 0 chr5 125989361 125989435 -26547824 - ID4 SINE ID -8 75 2 1 1546 479 243 34 41 chr5 125989439 125989585 -26547674 - B1F SINE Alu 0 149 5 1 1546 855 127 97 0 chr5 125989848 125989982 -26547277 + B1_Mus1 SINE Alu 2 148 0 1 1546 256 325 16 73 chr5 125990000 125990123 -26547136 - PB1D10 SINE Alu -1 116 1 1 1546 232 284 60 71 chr5 125990765 125990947 -26546312 - B2_Mm2 SINE B2 0 195 16 1 1546 750 229 13 6 chr5 125990799 125990957 -26546302 - RSINE1 SINE B4 0 165 7 1 1546 247 306 0 23 chr5 125991241 125991328 -26545931 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1546 540 81 0 0 chr5 125991378 125991452 -26545807 + (GAAA)n Simple_repeat Simple_repeat 3 76 0 1 1546 1364 102 25 20 chr5 125992562 125992791 -26544468 - MTB_Mm LTR MaLR 0 407 101 1 1546 231 276 39 26 chr5 125998850 125998928 -26538331 - ID2 SINE ID -3 80 2 1 1546 1348 99 0 11 chr5 125998946 125999130 -26538129 + B2_Mm2 SINE B2 1 182 -13 1 1546 359 220 32 32 chr5 125999130 125999224 -26538035 - B3 SINE B2 -15 201 108 1 1546 215 147 0 0 chr5 125999240 125999274 -26537985 - B3 SINE B2 -169 47 14 1 1546 255 298 13 12 chr5 126000809 126000908 -26536351 - L2a LINE L2 -248 3127 3028 1 1546 280 158 53 0 chr5 126001077 126001134 -26536125 - PB1D7 SINE Alu -44 76 17 2 1546 235 285 50 3 chr5 126002072 126002171 -26535088 + MIRc SINE MIR 83 189 -87 3 1546 778 174 72 0 chr5 126002467 126002605 -26534654 - B1_Mur4 SINE Alu -1 149 2 4 1546 514 273 63 0 chr5 126002652 126002795 -26534464 + RSINE1 SINE B4 2 153 -12 5 1546 227 280 40 0 chr5 126002928 126003003 -26534256 + MLT1H2 LTR MaLR 70 147 -342 6 1546 1912 137 79 11 chr5 126003661 126004015 -26533244 - ORR1C1 LTR MaLR 0 378 1 7 1546 270 0 0 0 chr5 126004193 126004223 -26533036 + (TG)n Simple_repeat Simple_repeat 2 31 0 8 1546 337 284 73 9 chr5 126004226 126004336 -26532923 + PB1D10 SINE Alu 1 117 0 9 1546 396 132 0 0 chr5 126004416 126004499 -26532760 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1546 275 156 0 38 chr5 126004528 126004608 -26532651 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 1 1546 764 242 19 0 chr5 126005928 126006089 -26531170 + B3A SINE B2 3 166 -32 1 1546 245 50 15 104 chr5 126006869 126006936 -26530323 + (CAAA)n Simple_repeat Simple_repeat 1 61 0 1 1546 373 259 61 26 chr5 126006986 126007101 -26530158 + B3 SINE B2 96 214 -2 1 1546 1142 61 0 13 chr5 126007438 126007588 -26529671 - B1_Mus1 SINE Alu 0 148 1 1 1546 451 287 158 17 chr5 126007802 126008043 -26529216 - B4A SINE B4 -17 275 1 1 1546 2421 50 3 0 chr5 126008350 126008668 -26528591 - ORR1A2 LTR MaLR -8 319 1 1 1546 197 159 23 0 chr5 126009478 126009522 -26527737 + CT-rich Low_complexity Low_complexity 4 48 0 1 1546 240 268 49 118 chr5 126010521 126010665 -26526594 + L2b LINE L2 3241 3374 -1 1 1546 298 123 121 15 chr5 126010784 126010795 -26526464 + B4 SINE B4 67 84 -208 2 1546 383 86 124 4 chr5 126010795 126010884 -26526375 + B1_Mur4 SINE Alu 1 117 0 2 1546 354 98 0 0 chr5 126010886 126010937 -26526322 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 2 1546 938 98 14 0 chr5 126011442 126011585 -26525674 + (TTTC)n Simple_repeat Simple_repeat 2 146 0 2 1546 1124 48 0 0 chr5 126011585 126011730 -26525529 - B1_Mm SINE Alu -2 145 1 2 1546 436 200 22 35 chr5 126012499 126012739 -26524520 + CT-rich Low_complexity Low_complexity 1 236 0 2 1546 25 0 0 0 chr5 126012837 126012862 -26524397 + GC_rich Low_complexity Low_complexity 1 25 0 2 1546 180 0 0 0 chr5 126014851 126014871 -26522388 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 2 1546 519 123 0 0 chr5 126015851 126015932 -26521327 + (GGA)n Simple_repeat Simple_repeat 3 83 0 2 1546 477 0 0 0 chr5 126016107 126016160 -26521099 + (TC)n Simple_repeat Simple_repeat 1 53 0 2 1546 369 0 0 0 chr5 126016160 126016201 -26521058 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1546 713 79 24 81 chr5 126016221 126016345 -26520914 - B1_Mur2 SINE Alu -10 139 23 3 1546 291 219 55 0 chr5 126016301 126016374 -26520885 - B4A SINE B4 -141 151 75 3 1546 1013 226 135 0 chr5 126016763 126017015 -26520244 - B4A SINE B4 -6 286 1 3 1546 206 61 30 0 chr5 126017138 126017171 -26520088 - MIRc SINE MIR -123 145 112 3 1546 668 242 0 32 chr5 126017279 126017437 -26519822 - RSINE1 SINE B4 -4 161 9 3 1546 1287 84 0 0 chr5 126017437 126017615 -26519644 + (TTC)n Simple_repeat Simple_repeat 2 179 0 3 1546 283 284 103 21 chr5 126017876 126017973 -26519286 + Lx8 LINE L1 5824 5932 -1712 3 1546 783 189 7 0 chr5 126018167 126018310 -26518949 + B1_Mur1 SINE Alu 6 149 0 3 1546 593 296 12 6 chr5 126018324 126018494 -26518765 + B4 SINE B4 1 171 -121 3 1546 283 174 0 0 chr5 126018492 126018538 -26518721 + B3 SINE B2 149 194 -22 4 1546 510 46 0 0 chr5 126018538 126018603 -26518656 + (TA)n Simple_repeat Simple_repeat 1 65 0 4 1546 361 239 311 17 chr5 126018607 126018771 -26518488 + B3 SINE B2 1 212 -4 4 1546 535 108 20 0 chr5 126018822 126018924 -26518335 + (TCTA)n Simple_repeat Simple_repeat 3 106 0 4 1546 543 189 125 29 chr5 126018925 126019061 -26518198 - RSINE1 SINE B4 -12 153 5 4 1546 228 67 0 0 chr5 126019071 126019101 -26518158 + (TC)n Simple_repeat Simple_repeat 1 30 0 4 1546 460 279 33 0 chr5 126020132 126020254 -26517005 + B1F2 SINE Alu 7 132 -17 4 1546 551 15 15 0 chr5 126020254 126020322 -26516937 + (CA)n Simple_repeat Simple_repeat 1 69 0 4 1546 196 319 134 12 chr5 126020632 126020803 -26516456 - L2a LINE L2 -291 3135 2944 4 1546 480 287 14 14 chr5 126020803 126020948 -26516311 + RSINE1 SINE B4 3 147 -18 4 1546 426 227 20 0 chr5 126020954 126021095 -26516164 + (TA)n Simple_repeat Simple_repeat 1 144 0 5 1546 3086 46 5 8 chr5 126021095 126021492 -26515767 - MTA_Mm LTR MaLR 0 396 1 5 1546 426 227 20 0 chr5 126021492 126021500 -26515759 + (TA)n Simple_repeat Simple_repeat 1 8 0 5 1546 432 0 0 0 chr5 126021501 126021549 -26515710 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1546 437 310 6 87 chr5 126021819 126021906 -26515353 + B4 SINE B4 2 84 -208 5 1546 216 67 0 0 chr5 126021906 126021936 -26515323 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 5 1546 437 310 6 87 chr5 126021936 126022021 -26515238 + B4 SINE B4 85 160 -132 5 1546 702 209 8 0 chr5 126022082 126022216 -26515043 + B3A SINE B2 5 139 -59 5 1546 342 0 0 0 chr5 126022218 126022256 -26515003 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1546 531 148 0 0 chr5 126022288 126022376 -26514883 + ID_B1 SINE B4 137 224 0 5 1546 566 285 0 0 chr5 126022829 126022952 -26514307 + RSINE1 SINE B4 3 125 -40 5 1546 247 306 91 34 chr5 126022952 126023005 -26514254 + B2_Mm2 SINE B2 2 187 -8 6 1546 252 374 0 18 chr5 126023016 126023125 -26514134 + MER58A DNA MER1_type 1 107 -117 6 1546 449 343 67 28 chr5 126023280 126023535 -26513724 - Charlie23a DNA MER1_type -21 318 54 6 1546 447 19 0 0 chr5 126023590 126023642 -26513617 + (TC)n Simple_repeat Simple_repeat 1 52 0 6 1546 287 333 29 29 chr5 126023834 126023970 -26513289 - MLT1K LTR MaLR -115 480 345 6 1546 408 125 0 0 chr5 126024203 126024267 -26512992 + (GGA)n Simple_repeat Simple_repeat 1 64 0 6 1546 564 248 107 0 chr5 126024442 126024591 -26512668 + B3A SINE B2 1 165 -33 6 1546 477 0 0 0 chr5 126024599 126024652 -26512607 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1546 252 0 0 0 chr5 126025193 126025221 -26512038 + (TATG)n Simple_repeat Simple_repeat 2 29 0 6 1546 370 230 5 0 chr5 126025221 126025313 -26511946 - PB1D10 SINE Alu -9 108 17 6 1546 883 171 0 7 chr5 126025333 126025480 -26511779 - B1_Mus1 SINE Alu -2 146 1 7 1546 924 227 25 5 chr5 126025578 126025782 -26511477 - B3 SINE B2 -8 208 1 7 1546 405 0 0 0 chr5 126026289 126026334 -26510925 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1546 396 0 0 0 chr5 126026511 126026555 -26510704 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1546 213 364 0 0 chr5 126027309 126027375 -26509884 + (CACG)n Simple_repeat Simple_repeat 4 69 0 7 1546 773 302 66 84 chr5 126027395 126027704 -26509555 + MTE2a LTR MaLR 8 316 -63 7 1546 1604 181 89 11 chr5 126027704 126028073 -26509186 - RMER10B LTR ERVL 0 398 1 7 1546 773 302 66 84 chr5 126028073 126028142 -26509117 + MTE2a LTR MaLR 317 379 0 7 1546 306 0 0 0 chr5 126028691 126028725 -26508534 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1546 189 0 0 0 chr5 126029409 126029430 -26507829 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 7 1546 845 155 7 21 chr5 126029942 126030087 -26507172 + B1_Mur4 SINE Alu 3 145 -5 7 1546 510 211 104 16 chr5 126030576 126030701 -26506558 - B1_Mur2 SINE Alu 0 149 14 8 1546 534 312 65 60 chr5 126031205 126031524 -26505735 + L1MB5 LINE L1 5599 5920 -392 8 1546 369 0 0 0 chr5 126031817 126031858 -26505401 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 8 1546 209 321 35 23 chr5 126032766 126032852 -26504407 + L4 LINE RTE 1783 1869 -160 8 1546 227 204 0 39 chr5 126033335 126033359 -26503900 + T-rich Low_complexity Low_complexity 26 49 0 8 1546 1611 31 0 0 chr5 126033359 126033551 -26503708 - B2_Mm1t SINE B2 0 193 2 8 1546 227 204 0 39 chr5 126033551 126033577 -26503682 + T-rich Low_complexity Low_complexity 1 25 0 8 1546 1142 106 0 11 chr5 126033589 126033771 -26503488 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 8 1546 1006 143 14 0 chr5 126033788 126034137 -26503122 + (TCTA)n Simple_repeat Simple_repeat 1 353 0 8 1546 1008 194 43 10 chr5 126034199 126034407 -26502852 - B3 SINE B2 0 216 2 8 1546 309 252 47 94 chr5 126034686 126034813 -26502446 - B1F SINE Alu -1 148 28 8 1546 225 0 0 0 chr5 126034864 126034889 -26502370 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1546 1476 175 55 0 chr5 126034996 126035288 -26501971 + MTD LTR MaLR 112 419 0 9 1546 563 227 94 0 chr5 126035623 126035751 -26501508 - ID_B1 SINE B4 -4 220 81 9 1546 651 236 28 0 chr5 126035794 126035938 -26501321 - B1_Mur2 SINE Alu 0 149 2 9 1546 189 0 0 0 chr5 126036378 126036399 -26500860 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1546 357 43 0 0 chr5 126037416 126037463 -26499796 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1546 1776 219 28 3 chr5 126037488 126037845 -26499414 - MTEb LTR MaLR 0 379 14 9 1546 281 342 17 0 chr5 126037966 126038086 -26499173 - L1M4 LINE L1 -313 5861 5740 9 1546 202 194 0 0 chr5 126038425 126038461 -26498798 + GA-rich Low_complexity Low_complexity 2 37 0 9 1546 392 198 25 0 chr5 126038749 126038830 -26498429 - ID4_ SINE ID 0 83 1 9 1546 266 152 22 0 chr5 126038830 126038876 -26498383 - ZP3AR Satellite Satellite -117 95 49 1 1546 977 121 0 0 chr5 126039827 126039967 -26497292 + B1_Mur4 SINE Alu 2 141 -9 1 1546 915 181 48 24 chr5 126039979 126040188 -26497071 - B3 SINE B2 -1 215 2 1 1546 286 331 98 44 chr5 126040381 126040559 -26496700 - MLT1K LTR MaLR -76 519 332 1 1546 963 258 7 175 chr5 126040559 126041015 -26496244 - MTE2a LTR MaLR 0 379 1 1 1546 180 0 0 0 chr5 126041415 126041435 -26495824 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1546 794 272 182 22 chr5 126042060 126042385 -26494874 + ORR1E LTR MaLR 1 377 -2 1 1546 208 0 0 59 chr5 126043405 126043439 -26493820 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1 1546 281 167 50 0 chr5 126043440 126043500 -26493759 + RLTR25A LTR ERVK 120 182 -921 1 1546 936 122 0 0 chr5 126043511 126043658 -26493601 - B1_Mus2 SINE Alu 0 147 1 1 1546 423 291 43 64 chr5 126043658 126043699 -26493560 - B4 SINE B4 -213 79 43 1 1546 202 261 116 32 chr5 126044252 126044347 -26492912 - L3 LINE CR1 -91 4398 4296 1 1546 363 181 0 0 chr5 126044466 126044538 -26492721 + A-rich Low_complexity Low_complexity 1 72 0 1 1546 382 286 74 74 chr5 126044601 126044831 -26492428 - ORR1E LTR MaLR -15 344 115 1 1546 522 0 0 0 chr5 126044904 126044962 -26492297 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1546 1156 62 0 0 chr5 126044962 126045107 -26492152 - B1_Mm SINE Alu -1 146 2 1 1546 189 0 0 0 chr5 126045997 126046018 -26491241 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1546 306 0 0 0 chr5 126046675 126046709 -26490550 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1546 421 257 40 0 chr5 126046728 126046829 -26490430 - B3A SINE B2 -89 109 5 1 1546 855 280 22 0 chr5 126047720 126047945 -26489314 - B4A SINE B4 -38 254 25 1 1546 221 276 11 0 chr5 126048034 126048121 -26489138 + GA-rich Low_complexity Low_complexity 1 88 0 1 1546 421 242 10 10 chr5 126048121 126048217 -26489042 - PB1D7 SINE Alu -11 109 14 1 1546 408 40 0 0 chr5 126049178 126049228 -26488031 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1546 249 83 0 0 chr5 126049228 126049263 -26487996 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1546 2948 37 56 0 chr5 126049877 126050252 -26487007 - MTA_Mm LTR MaLR 0 396 1 1 1546 1023 194 23 14 chr5 126050307 126050521 -26486738 + B3 SINE B2 1 216 0 1 1546 919 198 38 43 chr5 126050549 126050760 -26486499 + B3 SINE B2 7 216 0 1 1546 343 188 16 0 chr5 126050766 126050830 -26486429 + B1_Mus1 SINE Alu 1 65 -83 1 1546 270 0 0 0 chr5 126050835 126050865 -26486394 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1 1546 631 81 30 10 chr5 126050869 126050969 -26486290 - B2_Mm2 SINE B2 -93 102 1 1 1546 331 146 184 58 chr5 126050970 126051057 -26486202 + B1_Mur2 SINE Alu 52 149 0 1 1546 460 301 205 7 chr5 126051439 126051727 -26485532 - MLT1G LTR MaLR -8 583 239 1 1546 1500 188 169 6 chr5 126051869 126052217 -26485042 + MTB_Mm LTR MaLR 2 406 -1 1 1546 218 32 0 31 chr5 126053525 126053557 -26483702 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1546 511 231 8 71 chr5 126053560 126053686 -26483573 + B4 SINE B4 43 160 -132 1 1546 1784 151 47 0 chr5 126053767 126054066 -26483193 - MTC LTR MaLR -101 320 8 1 1546 589 293 65 104 chr5 126054219 126054323 -26482936 - B4 SINE B4 -2 290 203 1 1546 665 256 37 0 chr5 126054323 126054514 -26482745 - B3A SINE B2 0 198 1 1 1546 589 293 65 104 chr5 126054514 126054687 -26482572 - B4 SINE B4 -90 202 24 1 1546 198 0 0 0 chr5 126055866 126055888 -26481371 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1546 462 156 14 28 chr5 126055898 126056043 -26481216 + (TCTCTG)n Simple_repeat Simple_repeat 6 148 0 1 1546 737 206 222 0 chr5 126056593 126056773 -26480486 + ID_B1 SINE B4 3 222 -2 1 1546 248 243 0 119 chr5 126058169 126058253 -26479006 - B4A SINE B4 0 292 219 1 1546 207 0 0 0 chr5 126058256 126058279 -26478980 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1546 1344 90 21 0 chr5 126058360 126058548 -26478711 - B2_Mm1a SINE B2 -1 192 1 1 1546 1055 136 124 11 chr5 126058548 126058726 -26478533 - B3 SINE B2 -16 200 3 1 1546 455 257 93 110 chr5 126058727 126058974 -26478285 - B4A SINE B4 -63 229 3 1 1546 813 208 13 13 chr5 126059982 126060138 -26477121 + B3A SINE B2 1 156 -42 1 1546 252 175 0 0 chr5 126060157 126060220 -26477039 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 1 1546 342 307 77 24 chr5 126060433 126060640 -26476619 - L1M5 LINE L1 -451 5673 5456 1 1546 1034 242 111 38 chr5 126060995 126061352 -26475907 + MTD LTR MaLR 11 403 -16 1 1546 951 235 121 53 chr5 126061353 126061708 -26475551 - MTE2a LTR MaLR 0 379 1 1 1546 640 254 35 6 chr5 126061773 126061940 -26475319 + ORR1E LTR MaLR 1 172 -187 1 1546 581 159 0 0 chr5 126061940 126062028 -26475231 + RLTR26 LTR ERVK 1 88 -554 1 1546 697 259 33 18 chr5 126062018 126062263 -26474996 + RMER17B LTR ERVK 499 784 -174 1 1546 523 252 65 71 chr5 126062245 126062478 -26474781 + RMER13B LTR ERVK 593 899 -9 1 1546 290 222 15 45 chr5 126062496 126062562 -26474697 + ORR1E LTR MaLR 240 303 -76 1 1546 339 65 0 0 chr5 126062793 126062839 -26474420 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1 1546 954 239 5 10 chr5 126062890 126063097 -26474162 + B3 SINE B2 1 206 -10 1 1546 786 111 150 64 chr5 126063106 126063279 -26473980 + B2_Mm2 SINE B2 1 188 -7 1 1546 260 268 28 0 chr5 126063403 126063474 -26473785 + ID4_ SINE ID 2 74 -9 1 1546 242 312 41 61 chr5 126063893 126064040 -26473219 + B1F2 SINE Alu 1 144 -5 1 1546 422 152 30 0 chr5 126064060 126064126 -26473133 + ID4_ SINE ID 7 74 -9 1 1546 288 203 34 112 chr5 126064126 126064141 -26473118 + B4 SINE B4 26 83 -209 1 1546 600 244 23 0 chr5 126064860 126064991 -26472268 + B1_Mur1 SINE Alu 1 134 -15 1 1546 2196 102 18 56 chr5 126065302 126065644 -26471615 - ORR1A4 LTR MaLR 0 329 1 1 1546 186 299 0 0 chr5 126066150 126066284 -26470975 + (TG)n Simple_repeat Simple_repeat 1 134 0 1 1546 629 279 91 73 chr5 126066315 126066601 -26470658 - B4A SINE B4 0 292 2 1 1546 28 0 0 0 chr5 126066918 126066946 -26470313 + AT_rich Low_complexity Low_complexity 1 28 0 1 1546 23 0 0 0 chr5 126067056 126067079 -26470180 + AT_rich Low_complexity Low_complexity 1 23 0 1 1546 315 343 36 73 chr5 126067886 126068078 -26469181 + MLT1C LTR MaLR 216 400 -67 1 1546 373 214 10 10 chr5 126068143 126068247 -26469012 + CT-rich Low_complexity Low_complexity 3 106 0 1 1546 325 203 29 0 chr5 126068253 126068322 -26468937 - ID4 SINE ID -11 72 2 1 1546 332 269 94 19 chr5 126068331 126068437 -26468822 - ID_B1 SINE B4 -2 222 109 1 1546 1970 147 11 138 chr5 126068448 126068890 -26468369 - ORR1B1 LTR MaLR -8 386 1 1 1546 1038 177 85 15 chr5 126069083 126069284 -26467975 - B3 SINE B2 0 216 2 1 1546 520 186 76 29 chr5 126070099 126070204 -26467055 + ID_B1 SINE B4 113 222 -2 1 1546 246 288 14 0 chr5 126071621 126071710 -26465549 + L1M1 LINE L1 5826 5915 -382 1 1546 213 159 0 22 chr5 126071879 126071924 -26465335 + A-rich Low_complexity Low_complexity 6 49 0 1 1546 432 67 0 0 chr5 126072325 126072385 -26464874 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1546 867 171 115 6 chr5 126072385 126072550 -26464709 - B3 SINE B2 -32 184 2 1 1546 767 238 83 28 chr5 126072554 126072770 -26464489 - B4 SINE B4 -63 229 2 1 1546 415 235 143 0 chr5 126072904 126073002 -26464257 - PB1D10 SINE Alu -5 112 1 1 1546 238 239 28 69 chr5 126073683 126073755 -26463504 - B3 SINE B2 -4 212 144 1 1546 197 306 16 16 chr5 126073776 126073839 -26463420 - MIRc SINE MIR -111 157 95 1 1546 669 289 51 51 chr5 126073877 126074169 -26463090 - B4A SINE B4 0 292 1 1 1546 411 246 89 67 chr5 126074271 126074424 -26462835 - MIR SINE MIR -29 239 80 1 1546 981 230 14 24 chr5 126075086 126075295 -26461964 - B3 SINE B2 -5 211 5 1 1546 1228 48 7 0 chr5 126075379 126075525 -26461734 - B1_Mus1 SINE Alu 0 148 2 1 1546 4768 84 123 73 chr5 126075697 126076075 -26461184 + RMER17D LTR ERVK 1 347 -542 1 1546 1290 56 0 0 chr5 126076075 126076255 -26461004 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 1 1546 4768 84 123 73 chr5 126076255 126076721 -26460538 + RMER17D LTR ERVK 348 887 -2 1 1546 1305 182 9 0 chr5 126077359 126077573 -26459686 + URR1B DNA MER1_type 10 225 0 1 1546 297 0 0 0 chr5 126077601 126077634 -26459625 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1546 830 174 6 0 chr5 126077857 126078029 -26459230 + (TG)n Simple_repeat Simple_repeat 2 174 0 1 1546 875 266 87 8 chr5 126078057 126078322 -26458937 - B4A SINE B4 -5 287 2 1 1546 1144 85 11 11 chr5 126079023 126079202 -26458057 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 1 1546 429 20 0 0 chr5 126079226 126079276 -26457983 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 1 1546 338 247 20 110 chr5 126079483 126079583 -26457676 + B3A SINE B2 1 91 -107 1 1546 1021 224 5 5 chr5 126079573 126079766 -26457493 + B3 SINE B2 11 203 -13 1 1546 415 260 67 0 chr5 126080796 126080900 -26456359 + PB1D7 SINE Alu 1 111 -9 1 1546 703 282 42 33 chr5 126080947 126081160 -26456099 + B3 SINE B2 1 215 -1 1 1546 1415 70 27 0 chr5 126081188 126081373 -26455886 + B2_Mm1t SINE B2 2 191 -2 1 1546 381 93 0 0 chr5 126081483 126081537 -26455722 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 1 1546 450 94 0 0 chr5 126081547 126081611 -26455648 - B1_Mm SINE Alu 0 147 84 1 1546 820 117 87 120 chr5 126081621 126081805 -26455454 + B2_Mm2 SINE B2 10 187 -8 2 1546 1039 217 186 26 chr5 126081876 126082183 -26455076 + MTE2a LTR MaLR 1 356 -23 2 1546 244 62 0 0 chr5 126082803 126082835 -26454424 - MIR SINE MIR -120 142 111 2 1546 586 263 267 34 chr5 126083278 126083395 -26453864 + B4A SINE B4 1 142 -150 2 1546 315 0 0 0 chr5 126083395 126083430 -26453829 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1546 586 263 267 34 chr5 126083430 126083548 -26453711 + B4A SINE B4 143 290 -2 2 1546 621 176 21 0 chr5 126083563 126083705 -26453554 + (CA)n Simple_repeat Simple_repeat 2 146 0 2 1546 3678 39 18 98 chr5 126083713 126084224 -26453035 - MT2C_Mm LTR ERVL -2 473 4 2 1546 647 99 10 0 chr5 126084224 126084325 -26452934 + (CA)n Simple_repeat Simple_repeat 2 103 0 2 1546 288 137 0 0 chr5 126084666 126084717 -26452542 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1546 938 162 0 6 chr5 126084729 126084909 -26452350 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1546 348 24 0 0 chr5 126084957 126084998 -26452261 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1546 261 0 0 0 chr5 126084998 126085026 -26452233 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1546 367 246 32 0 chr5 126085028 126085165 -26452094 - B4 SINE B4 -26 266 82 2 1546 794 252 40 75 chr5 126085182 126085409 -26451850 - B4 SINE B4 -69 223 5 2 1546 284 292 24 40 chr5 126085875 126086000 -26451259 - L1MC4 LINE L1 -1112 6930 6808 2 1546 828 292 27 40 chr5 126086253 126086549 -26450710 + B4A SINE B4 1 292 0 2 1546 466 191 15 0 chr5 126086587 126086718 -26450541 + (CA)n Simple_repeat Simple_repeat 2 134 0 2 1546 346 364 58 41 chr5 126086892 126087184 -26450075 - MT2A LTR ERVL -73 460 164 2 1546 542 233 14 43 chr5 126087123 126087262 -26449997 - RSINE1 SINE B4 -28 137 3 2 1546 21 0 0 0 chr5 126088239 126088260 -26448999 + GC_rich Low_complexity Low_complexity 1 21 0 2 1546 247 314 47 19 chr5 126088322 126088429 -26448830 + MIR SINE MIR 23 132 -130 2 1546 397 287 125 65 chr5 126088635 126088803 -26448456 - B4 SINE B4 -114 178 1 2 1546 389 239 12 12 chr5 126088903 126089064 -26448195 + GA-rich Low_complexity Low_complexity 2 162 0 2 1546 511 198 24 12 chr5 126089112 126089276 -26447983 + GA-rich Low_complexity Low_complexity 3 168 0 2 1546 182 118 29 0 chr5 126089289 126089323 -26447936 + (GGAGAA)n Simple_repeat Simple_repeat 5 39 0 2 1546 1673 205 74 34 chr5 126090249 126090602 -26446657 - ORR1D2 LTR MaLR -3 367 1 2 1546 265 345 77 27 chr5 126090822 126091081 -26446178 + L1M5 LINE L1 5395 5666 -513 2 193 1135 218 65 48 chr5 126091239 126091533 -26445726 + MTE2a LTR MaLR 81 379 0 2 1547 264 219 24 12 chr5 126091860 126091943 -26445316 + (TA)n Simple_repeat Simple_repeat 2 85 0 2 1547 717 116 83 42 chr5 126092113 126092257 -26445002 - B1_Mur4 SINE Alu 0 150 1 2 1547 450 0 0 0 chr5 126093144 126093194 -26444065 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 1547 715 224 0 65 chr5 126093200 126093353 -26443906 - RSINE1 SINE B4 -20 145 3 2 1547 240 35 0 0 chr5 126093484 126093513 -26443746 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1547 1216 181 15 0 chr5 126094080 126094284 -26442975 - B3 SINE B2 -6 210 4 2 1547 243 326 82 0 chr5 126095271 126095369 -26441890 + MIR SINE MIR 32 137 -125 2 1547 182 320 0 82 chr5 126095489 126095574 -26441685 + MIR SINE MIR 185 262 0 2 1547 614 299 19 7 chr5 126095624 126095779 -26441480 - RSINE1 SINE B4 -4 161 5 2 1547 1281 65 65 0 chr5 126095957 126096127 -26441132 + B2_Mm2 SINE B2 1 181 -14 2 1547 493 233 7 95 chr5 126096183 126096330 -26440929 + B1_Mur2 SINE Alu 1 134 -15 2 1547 566 267 120 27 chr5 126097067 126097217 -26440042 + RSINE1 SINE B4 2 165 0 2 1547 1051 253 86 43 chr5 126097249 126097505 -26439754 - B4A SINE B4 0 292 26 2 1547 966 211 53 14 chr5 126097561 126097768 -26439491 - B3 SINE B2 -1 215 1 2 1547 848 210 33 71 chr5 126098431 126098641 -26438618 - MTEb LTR MaLR -7 372 171 2 1547 321 347 23 112 chr5 126098656 126098912 -26438347 - B4 SINE B4 -18 274 81 2 1547 967 135 214 0 chr5 126098912 126099090 -26438169 - B3 SINE B2 0 216 1 2 1547 321 374 33 144 chr5 126099090 126099178 -26438081 - B4 SINE B4 -212 80 3 2 1547 749 263 17 6 chr5 126099178 126099348 -26437911 - MTEb LTR MaLR -207 172 1 2 1547 22 0 0 0 chr5 126099748 126099770 -26437489 + AT_rich Low_complexity Low_complexity 1 22 0 2 1547 971 312 33 9 chr5 126100006 126100336 -26436923 - MLT1B LTR MaLR -8 382 45 2 1547 351 80 0 39 chr5 126101437 126101489 -26435770 + HAL1-3A_ME LINE L1 1963 2012 -846 2 1547 277 271 8 8 chr5 126101533 126101667 -26435592 + (CA)n Simple_repeat Simple_repeat 1 134 0 2 1547 260 259 0 0 chr5 126101880 126101934 -26435325 - MLT1A1 LTR MaLR -5 403 350 2 1547 766 204 40 20 chr5 126101939 126102089 -26435170 + RSINE1 SINE B4 13 165 0 2 1547 308 287 40 58 chr5 126102089 126102113 -26435146 + B2_Mm2 SINE B2 12 182 -13 2 1547 837 304 121 6 chr5 126103847 126104161 -26433098 - MER67B LTR ERV1 -25 636 287 2 1547 367 333 60 13 chr5 126104225 126104374 -26432885 - MER67B LTR ERV1 -499 162 7 2 1547 261 57 0 0 chr5 126104537 126104572 -26432687 + (TC)n Simple_repeat Simple_repeat 2 36 0 2 1547 209 98 0 24 chr5 126104589 126104631 -26432628 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1547 2423 129 51 18 chr5 126104873 126105267 -26431992 + MTB_Mm LTR MaLR 1 407 0 2 1547 824 143 57 7 chr5 126105313 126105454 -26431805 + B1_Mur3 SINE Alu 2 149 0 2 1547 1261 98 43 11 chr5 126105611 126105796 -26431463 + B2_Mm2 SINE B2 1 191 -4 2 1547 378 0 0 0 chr5 126106225 126106267 -26430992 + (GA)n Simple_repeat Simple_repeat 1 42 0 2 1547 688 256 18 6 chr5 126106790 126106955 -26430304 + B4 SINE B4 2 168 -124 2 1547 1979 221 89 11 chr5 126106967 126107425 -26429834 - MT2A LTR ERVL -2 531 38 2 1547 222 91 0 0 chr5 126107464 126107497 -26429762 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1547 334 154 48 30 chr5 126107501 126107668 -26429591 + (CAGAGA)n Simple_repeat Simple_repeat 2 171 0 2 1547 270 0 0 0 chr5 126107715 126107745 -26429514 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 1547 637 305 79 19 chr5 126108470 126108737 -26428522 + MER113 DNA MER1_type 219 501 -20 2 1547 1065 171 36 54 chr5 126108800 126109022 -26428237 + URR1B DNA MER1_type 8 225 0 2 1547 446 250 11 0 chr5 126109509 126109597 -26427662 + B1F1 SINE Alu 13 101 -48 2 1547 630 227 139 25 chr5 126109700 126109858 -26427401 - MTE2a LTR MaLR -10 369 194 2 1547 440 337 19 45 chr5 126110440 126110683 -26426576 - ORR1E LTR MaLR -115 244 3 2 1547 750 194 57 25 chr5 126110766 126110925 -26426334 - MTE2a LTR MaLR 0 379 216 2 1547 299 338 87 14 chr5 126111436 126111574 -26425685 + RSINE1 SINE B4 2 149 -16 2 1547 945 203 16 6 chr5 126111767 126111950 -26425309 - B3 SINE B2 -31 185 1 2 1547 2478 137 28 59 chr5 126112798 126113224 -26424035 - MTC LTR MaLR -8 413 1 2 1547 815 290 58 98 chr5 126113285 126113491 -26423768 + B4A SINE B4 2 212 -80 2 1547 921 211 26 96 chr5 126113491 126113721 -26423538 - B3 SINE B2 -1 215 2 2 1547 815 290 58 98 chr5 126113721 126113789 -26423470 + B4A SINE B4 213 265 -27 2 1547 1375 254 68 0 chr5 126114187 126114542 -26422717 + MTEa LTR MaLR 1 379 0 2 1547 930 166 0 20 chr5 126114601 126114749 -26422510 + B1_Mur2 SINE Alu 4 148 -1 2 1547 687 241 53 18 chr5 126115203 126115372 -26421887 - B3A SINE B2 -23 175 1 2 1547 198 0 0 0 chr5 126115968 126115990 -26421269 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1547 540 68 0 0 chr5 126116155 126116228 -26421031 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 1547 692 275 6 38 chr5 126117251 126117410 -26419849 - RSINE1 SINE B4 -4 161 8 2 1547 504 234 19 0 chr5 126117550 126117657 -26419602 - PB1D7 SINE Alu -7 113 5 2 1547 347 215 0 112 chr5 126117759 126117848 -26419411 - RSINE1 SINE B4 -86 79 1 2 1547 1598 184 52 118 chr5 126117940 126118126 -26419133 - ORR1B1 LTR MaLR -20 374 219 2 1547 1219 49 7 0 chr5 126118126 126118270 -26418989 - B1_Mus1 SINE Alu -1 147 3 2 1547 1598 184 52 118 chr5 126118270 126118483 -26418776 - ORR1B1 LTR MaLR -176 218 1 2 1547 33 25 0 0 chr5 126119047 126119087 -26418172 + AT_rich Low_complexity Low_complexity 1 40 0 2 1547 397 252 69 69 chr5 126119111 126119256 -26418003 - RSINE1 SINE B4 -19 146 2 2 1547 1436 156 0 4 chr5 126120780 126121005 -26416254 - URR1B DNA MER1_type 0 225 2 2 1547 548 187 276 59 chr5 126121406 126121645 -26415614 - B4A SINE B4 0 292 2 2 1547 241 333 14 0 chr5 126122527 126122596 -26414663 - B4A SINE B4 0 292 223 2 1547 339 130 0 0 chr5 126122597 126122651 -26414608 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 1547 1168 167 21 5 chr5 126122659 126122846 -26414413 - B3 SINE B2 0 216 27 2 1547 304 292 82 20 chr5 126122958 126123056 -26414203 - RMER20B LTR ERVK -31 596 493 2 1547 646 262 41 108 chr5 126123117 126123500 -26413759 - RMER20B LTR ERVK -22 605 169 2 1547 184 285 124 43 chr5 126123738 126123947 -26413312 - L2a LINE L2 -179 3247 3022 2 1547 288 56 0 0 chr5 126123965 126124001 -26413258 - U2 snRNA snRNA -152 36 1 2 1547 327 331 120 19 chr5 126124366 126124674 -26412585 - L2 LINE L2 -358 3061 2723 2 1547 1413 161 87 135 chr5 126124806 126125207 -26412052 - ORR1C2 LTR MaLR 0 384 3 2 1547 2510 118 120 193 chr5 126125444 126126075 -26411184 + RMER4B LTR ERVK 1 585 0 2 1547 342 0 0 0 chr5 126126631 126126669 -26410590 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1547 840 279 0 0 chr5 126126671 126126836 -26410423 - B3A SINE B2 -33 165 1 2 1547 2063 148 3 0 chr5 126127309 126127627 -26409632 - ORR1A2 LTR MaLR -8 319 1 2 1547 251 269 26 0 chr5 126128019 126128097 -26409162 - L1M3 LINE L1 -595 5585 5506 2 1547 350 243 0 0 chr5 126128248 126128318 -26408941 + ID4 SINE ID 1 70 -13 3 1547 261 0 0 0 chr5 126128319 126128348 -26408911 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1547 306 0 0 0 chr5 126128348 126128381 -26408878 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 1547 331 259 51 22 chr5 126128446 126128584 -26408675 + L1MB5 LINE L1 5927 6068 -106 3 1547 939 144 13 13 chr5 126128679 126128834 -26408425 + B3 SINE B2 2 156 -60 3 1547 618 214 8 8 chr5 126129297 126129415 -26407844 - B1F SINE Alu -28 121 4 3 1547 555 307 101 27 chr5 126129620 126129878 -26407381 + B4 SINE B4 2 278 -14 3 1547 287 316 101 28 chr5 126129914 126130093 -26407166 + MER102c DNA MER1_type 63 254 -77 3 1547 267 54 0 0 chr5 126130104 126130141 -26407118 + (CCCA)n Simple_repeat Simple_repeat 2 38 0 3 1547 355 333 56 20 chr5 126130334 126130530 -26406729 + Charlie8 DNA MER1_type 347 549 -1879 3 1547 616 130 10 10 chr5 126130706 126130807 -26406452 + B1_Mur2 SINE Alu 5 105 -44 3 1547 247 275 77 35 chr5 126131251 126131373 -26405886 + MIRm SINE MIR 38 160 -48 3 1547 697 209 30 13 chr5 126131489 126131638 -26405621 - ID_B1 SINE B4 -66 226 70 3 1547 757 298 70 5 chr5 126132694 126132893 -26404366 + ID_B1 SINE B4 2 213 -11 3 1547 198 0 0 0 chr5 126132893 126132915 -26404344 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 3 1547 194 57 0 54 chr5 126132962 126132999 -26404260 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 3 1547 2321 198 10 5 chr5 126133250 126133661 -26403598 - MTC LTR MaLR -8 413 1 3 1547 241 103 34 17 chr5 126133875 126133934 -26403325 + A-rich Low_complexity Low_complexity 2 61 0 3 1547 210 37 0 0 chr5 126134344 126134371 -26402888 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 3 1547 939 108 14 0 chr5 126134372 126134511 -26402748 - B1_Mur4 SINE Alu -1 149 9 3 1547 447 87 0 0 chr5 126134690 126134759 -26402500 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1547 849 253 17 0 chr5 126134921 126135095 -26402164 + B3 SINE B2 9 185 -31 3 1547 736 252 39 27 chr5 126135161 126135480 -26401779 - L1MEg LINE L1 -4438 1570 1223 3 1547 471 78 0 0 chr5 126135697 126135761 -26401498 + (TG)n Simple_repeat Simple_repeat 2 65 0 3 1547 654 250 137 32 chr5 126135770 126136018 -26401241 - B4A SINE B4 -18 274 1 3 1547 289 368 0 0 chr5 126136123 126136229 -26401030 + (TG)n Simple_repeat Simple_repeat 2 107 0 3 1547 310 344 0 8 chr5 126136454 126136583 -26400676 + (TATG)n Simple_repeat Simple_repeat 1 128 0 3 1547 1135 95 0 0 chr5 126136604 126136751 -26400508 - B1_Mus2 SINE Alu 0 147 1 3 1547 318 237 37 13 chr5 126136755 126136858 -26400401 - MTE2b LTR MaLR -8 371 266 3 1547 450 0 0 0 chr5 126136942 126136992 -26400267 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 3 1547 460 263 85 28 chr5 126136992 126137006 -26400253 - B4 SINE B4 -78 214 158 3 1547 690 159 9 9 chr5 126137006 126137114 -26400145 - B1_Mur4 SINE Alu -40 110 3 3 1547 460 263 85 28 chr5 126137114 126137133 -26400126 - B4 SINE B4 -78 157 66 3 1547 615 211 0 27 chr5 126137598 126138047 -26399212 + (TG)n Simple_repeat Simple_repeat 1 436 0 3 1547 660 272 104 44 chr5 126138088 126138338 -26398921 - B4A SINE B4 -21 271 7 3 1547 208 167 62 0 chr5 126138953 126139001 -26398258 + (TCTCTG)n Simple_repeat Simple_repeat 6 56 0 3 1547 513 0 0 0 chr5 126140086 126140143 -26397116 + (TC)n Simple_repeat Simple_repeat 1 57 0 3 1547 396 0 0 0 chr5 126140143 126140187 -26397072 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1547 684 277 34 120 chr5 126140204 126140471 -26396788 + B4 SINE B4 49 292 0 3 1547 562 123 38 25 chr5 126140500 126140659 -26396600 + (CA)n Simple_repeat Simple_repeat 2 162 0 3 1547 265 149 15 15 chr5 126140717 126140785 -26396474 + (CA)n Simple_repeat Simple_repeat 2 69 0 3 1547 683 151 37 20 chr5 126140799 126141101 -26396158 + (CA)n Simple_repeat Simple_repeat 1 307 0 3 1547 261 0 0 0 chr5 126141498 126141527 -26395732 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1547 1077 235 10 0 chr5 126141537 126141737 -26395522 + ID_B1 SINE B4 3 204 -20 3 1547 519 270 61 61 chr5 126141920 126142117 -26395142 - Lx8 LINE L1 -2 7471 7275 3 1547 511 266 147 73 chr5 126142352 126142624 -26394635 - B4A SINE B4 0 292 1 3 1547 744 305 66 22 chr5 126143644 126143872 -26393387 - B4A SINE B4 -42 250 13 3 1547 192 233 30 91 chr5 126144422 126144488 -26392771 + L4 LINE RTE 373 434 -1595 3 1547 919 153 222 0 chr5 126145108 126145284 -26391975 - B3 SINE B2 0 216 2 3 1547 240 350 32 4 chr5 126145372 126145485 -26391774 + MIR SINE MIR 33 146 -116 3 1547 651 210 0 8 chr5 126145582 126145702 -26391557 - PB1D9 SINE Alu -1 119 1 3 1547 223 355 18 53 chr5 126145750 126145863 -26391396 + ID_B1 SINE B4 16 124 -100 3 1547 180 137 0 56 chr5 126146316 126146370 -26390889 + CT-rich Low_complexity Low_complexity 1 51 0 3 1547 647 255 25 56 chr5 126146408 126146570 -26390689 - RSINE1 SINE B4 -7 158 2 3 1547 623 244 78 62 chr5 126146904 126147083 -26390176 + B3A SINE B2 1 182 -16 3 1547 313 285 29 4 chr5 126147989 126148112 -26389147 - PB1D10 SINE Alu -21 128 4 3 1547 208 291 0 0 chr5 126148597 126148652 -26388607 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1547 1117 267 24 14 chr5 126148661 126148728 -26388531 - B4 SINE B4 0 292 221 3 1547 255 31 0 0 chr5 126148728 126148760 -26388499 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3 1547 1117 267 24 14 chr5 126148760 126148981 -26388278 - B4 SINE B4 -72 220 2 3 1547 397 274 0 40 chr5 126149665 126149764 -26387495 - PB1D10 SINE Alu -19 98 4 3 1547 398 277 30 111 chr5 126149981 126150126 -26387133 - ID_B1 SINE B4 -41 183 52 3 1547 290 303 13 13 chr5 126150126 126150203 -26387056 - ID4 SINE ID -6 77 1 3 1547 398 277 30 111 chr5 126150203 126150256 -26387003 - ID SINE ID -173 51 1 3 1547 707 125 8 77 chr5 126150256 126150333 -26386926 - ZP3AR Satellite Satellite -64 148 28 3 1547 474 229 16 32 chr5 126150715 126150841 -26386418 + HAL1-2a_MD LINE L1 2396 2519 -505 3 1547 27 49 0 0 chr5 126151331 126151372 -26385887 + AT_rich Low_complexity Low_complexity 1 41 0 3 1547 480 324 54 0 chr5 126151377 126151525 -26385734 - RSINE1 SINE B4 -1 164 9 3 1547 21 0 0 0 chr5 126151527 126151548 -26385711 + AT_rich Low_complexity Low_complexity 1 21 0 3 1547 1949 123 81 3 chr5 126151570 126151903 -26385356 + RLTR15 LTR ERVK 1 359 0 3 1547 351 0 0 0 chr5 126151939 126151978 -26385281 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1547 690 276 6 42 chr5 126151987 126152152 -26385107 - RSINE1 SINE B4 -1 164 5 3 1547 336 262 25 0 chr5 126152660 126152740 -26384519 - ID4 SINE ID 0 83 2 3 1547 449 260 129 135 chr5 126152741 126152919 -26384340 - ID_B1 SINE B4 -51 241 65 3 1547 989 102 0 0 chr5 126153011 126153148 -26384111 - B1_Mus2 SINE Alu 0 147 11 3 1547 389 202 26 103 chr5 126153046 126153162 -26384097 - MT2B LTR ERVL -337 264 158 3 1547 285 214 18 0 chr5 126153552 126153608 -26383651 + ID4 SINE ID 1 57 -26 3 1547 611 215 7 29 chr5 126153765 126154047 -26383212 + (CATATA)n Simple_repeat Simple_repeat 1 275 0 3 1547 344 210 8 39 chr5 126154066 126154195 -26383064 + (CATATA)n Simple_repeat Simple_repeat 2 126 0 3 1547 384 189 19 44 chr5 126154217 126154377 -26382882 + (CATATA)n Simple_repeat Simple_repeat 5 160 0 3 1547 541 247 128 31 chr5 126154659 126154855 -26382404 + B3 SINE B2 1 215 -1 3 1547 22 0 0 0 chr5 126154946 126154968 -26382291 + AT_rich Low_complexity Low_complexity 1 22 0 3 1547 1053 173 0 6 chr5 126155619 126155782 -26381477 - RSINE1 SINE B4 0 165 4 3 1547 251 298 44 80 chr5 126155961 126156074 -26381185 - MLT1J1 LTR MaLR -1 443 335 3 1547 189 132 0 0 chr5 126156866 126156904 -26380355 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 3 1547 198 0 0 0 chr5 126157041 126157063 -26380196 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 3 1547 689 129 0 8 chr5 126157065 126157182 -26380077 + (TTTC)n Simple_repeat Simple_repeat 4 119 0 3 1547 535 108 21 0 chr5 126157175 126157268 -26379991 + (TCC)n Simple_repeat Simple_repeat 2 96 0 3 1547 2308 105 59 31 chr5 126157290 126157645 -26379614 - ORR1B2 LTR MaLR 0 367 3 3 1547 627 324 42 53 chr5 126157685 126157710 -26379549 - B4A SINE B4 0 292 270 3 1547 330 26 0 0 chr5 126157710 126157749 -26379510 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1547 627 324 42 53 chr5 126157749 126157987 -26379272 - B4A SINE B4 -23 269 32 3 1547 2054 50 51 2 chr5 126158321 126158606 -26378653 + MTA_Mm LTR MaLR 1 398 -2 3 1547 286 272 5 0 chr5 126158635 126158722 -26378537 - MIRm SINE MIR -52 156 72 3 1547 414 289 120 8 chr5 126158999 126159196 -26378063 + MLT1F1 LTR MaLR 90 351 -228 3 1547 787 186 153 33 chr5 126159544 126159727 -26377532 + B3 SINE B2 2 206 -10 3 1547 902 308 86 56 chr5 126159859 126160323 -26376936 + MTE-int LTR MaLR 948 1425 -155 3 1547 333 0 0 0 chr5 126160358 126160395 -26376864 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1547 1512 173 77 11 chr5 126160406 126160692 -26376567 + MTD LTR MaLR 115 419 0 3 1547 679 277 77 66 chr5 126160817 126161091 -26376168 + MTEa LTR MaLR 6 282 -97 3 1547 195 300 12 36 chr5 126161838 126161921 -26375338 - L2c LINE L2 -51 3336 3256 3 1547 564 233 0 0 chr5 126162162 126162265 -26374994 - B1F2 SINE Alu -7 142 40 3 1547 1430 74 11 0 chr5 126162448 126162637 -26374622 + B2_Mm1t SINE B2 2 192 -1 3 1547 194 271 55 41 chr5 126163230 126163303 -26373956 - L2c LINE L2 -170 3217 3144 3 1547 254 219 146 0 chr5 126163435 126163517 -26373742 - RLTR26 LTR ERVK -4 638 545 3 1547 1215 221 143 13 chr5 126163542 126163849 -26373410 - RLTR26 LTR ERVK -295 347 1 3 1547 261 229 16 0 chr5 126164270 126164331 -26372928 + CT-rich Low_complexity Low_complexity 3 64 0 3 1547 684 172 0 17 chr5 126164331 126164449 -26372810 - B1_Mur1 SINE Alu -16 133 18 3 1547 265 273 126 39 chr5 126164357 126164460 -26372799 - B4A SINE B4 -96 196 85 3 1547 251 258 61 0 chr5 126164486 126164552 -26372707 - ID4_ SINE ID -13 70 1 3 1547 608 304 0 0 chr5 126164677 126164825 -26372434 - B3A SINE B2 -46 152 5 4 1547 1475 78 10 5 chr5 126165161 126165353 -26371906 - B2_Mm2 SINE B2 -1 194 2 4 1547 675 329 72 42 chr5 126165506 126165769 -26371490 + B4A SINE B4 2 272 -20 4 1547 225 154 0 0 chr5 126167047 126167086 -26370173 + (TGG)n Simple_repeat Simple_repeat 3 41 0 4 1547 988 122 0 0 chr5 126167086 126167225 -26370034 + B1_Mus2 SINE Alu 9 147 0 4 1547 285 243 135 0 chr5 126167672 126167746 -26369513 - PB1 SINE Alu -12 115 32 4 1547 1247 259 0 10 chr5 126167909 126168202 -26369057 - B4A SINE B4 -2 290 1 4 1547 251 272 12 47 chr5 126168776 126168861 -26368398 + ID4 SINE ID 1 82 -1 4 1547 21 0 0 0 chr5 126168920 126168941 -26368318 + AT_rich Low_complexity Low_complexity 1 21 0 4 1547 730 241 73 8 chr5 126169486 126169733 -26367526 + L1MEf LINE L1 924 1186 -5014 4 1547 429 70 0 0 chr5 126169790 126169847 -26367412 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1547 282 300 12 48 chr5 126170047 126170131 -26367128 + ID4_ SINE ID 3 83 0 4 1547 426 238 17 17 chr5 126170135 126170371 -26366888 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 4 1547 240 35 0 0 chr5 126170495 126170524 -26366735 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1547 505 27 27 27 chr5 126171529 126171604 -26365655 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 4 1547 219 139 0 0 chr5 126172146 126172182 -26365077 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1547 832 301 55 7 chr5 126172213 126172487 -26364772 - B4 SINE B4 -4 288 2 4 1547 24 0 0 0 chr5 126173324 126173348 -26363911 + AT_rich Low_complexity Low_complexity 1 24 0 4 1547 252 236 19 19 chr5 126173371 126173531 -26363728 + CT-rich Low_complexity Low_complexity 1 160 0 4 1547 583 252 0 0 chr5 126173540 126173655 -26363604 - B1F SINE Alu -20 129 15 4 1547 603 290 62 13 chr5 126173656 126173810 -26363449 - L1MB7 LINE L1 -54 6130 5971 4 1547 219 36 0 0 chr5 126173810 126173838 -26363421 + (C)n Simple_repeat Simple_repeat 1 28 0 4 1547 603 290 62 13 chr5 126173838 126173910 -26363349 - L1MB7 LINE L1 -214 5970 5894 4 1547 182 346 111 0 chr5 126174091 126174172 -26363087 - L2b LINE L2 0 3375 3286 4 1547 233 190 67 0 chr5 126174532 126174602 -26362657 + L2a LINE L2 3087 3166 -209 4 1547 6086 57 13 8 chr5 126174638 126175396 -26361863 + L1Md_F2 LINE L1 5820 6581 -1 4 1547 227 357 0 0 chr5 126175456 126175540 -26361719 - Lx8 LINE L1 -6 7467 7384 4 1547 439 323 77 18 chr5 126175544 126175714 -26361545 + MTE2a LTR MaLR 198 377 -2 4 1547 867 179 0 0 chr5 126175792 126175971 -26361288 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1547 202 303 0 0 chr5 126176567 126176643 -26360616 + (CA)n Simple_repeat Simple_repeat 1 76 0 4 1547 214 325 0 0 chr5 126177884 126177961 -26359298 + (TG)n Simple_repeat Simple_repeat 2 78 0 4 1547 333 0 0 0 chr5 126178387 126178424 -26358835 + (TG)n Simple_repeat Simple_repeat 1 37 0 4 1547 730 200 313 10 chr5 126178424 126178719 -26358540 + MTD LTR MaLR 22 405 -14 4 1547 432 0 0 0 chr5 126179175 126179223 -26358036 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 4 1547 550 333 40 44 chr5 126179258 126179531 -26357728 - B4A SINE B4 -7 285 14 4 1547 301 325 58 8 chr5 126180685 126180806 -26356453 + MER58A DNA MER1_type 4 130 -94 4 1547 555 254 38 8 chr5 126181675 126181798 -26355461 + ORR1E LTR MaLR 7 133 -226 4 1547 353 135 0 0 chr5 126181798 126181850 -26355409 + B2_Mm2 SINE B2 1 52 -143 4 1547 432 300 54 70 chr5 126181840 126182108 -26355151 + ORR1E LTR MaLR 93 373 -6 4 1547 429 278 59 15 chr5 126182128 126182263 -26354996 - RMER15 LTR ERVL 0 575 435 4 1547 1296 229 7 11 chr5 126182199 126182477 -26354782 - ORR1C2-int LTR MaLR -1093 277 1 4 1547 990 203 65 19 chr5 126182477 126182703 -26354556 - ORR1C2 LTR MaLR 0 384 149 4 1547 569 178 0 8 chr5 126182703 126182822 -26354437 + GA-rich Low_complexity Low_complexity 2 119 0 4 1547 940 174 0 42 chr5 126182822 126183014 -26354245 - ORR1C2 LTR MaLR -188 186 3 4 1547 679 318 43 0 chr5 126183017 126183228 -26354031 - RMER15 LTR ERVL -110 465 246 4 1547 265 263 123 68 chr5 126183443 126183606 -26353653 + MER117 DNA MER1_type 12 183 -14 4 1547 420 359 48 61 chr5 126183631 126184008 -26353251 + MLT1L LTR MaLR 7 378 -232 4 1547 517 220 0 13 chr5 126184649 126184801 -26352458 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 4 1547 224 258 30 0 chr5 126184894 126185064 -26352195 + (TCCA)n Simple_repeat Simple_repeat 1 175 0 4 1547 247 256 17 0 chr5 126185091 126185208 -26352051 + (TCCA)n Simple_repeat Simple_repeat 3 121 0 4 1547 294 316 84 46 chr5 126185960 126186261 -26350998 - L2b LINE L2 -39 3336 3027 4 1547 464 252 86 26 chr5 126186391 126186542 -26350717 - MLT1D LTR MaLR -2 503 344 4 1547 324 0 0 0 chr5 126186542 126186578 -26350681 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1547 901 299 13 103 chr5 126188367 126188677 -26348582 + B4A SINE B4 1 282 -10 4 1547 459 52 0 0 chr5 126188710 126188768 -26348491 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1547 278 26 0 25 chr5 126188800 126188840 -26348419 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 4 1547 972 222 15 10 chr5 126189015 126189215 -26348044 - B3 SINE B2 -15 201 1 4 1547 568 150 22 22 chr5 126189478 126189498 -26347761 - Lx3_Mus LINE L1 -3 7006 6987 4 1547 192 40 0 0 chr5 126189498 126189523 -26347736 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 4 1547 568 150 22 22 chr5 126189523 126189638 -26347621 - Lx3_Mus LINE L1 -23 6986 6871 4 1547 233 281 0 0 chr5 126190463 126190520 -26346739 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1547 239 254 0 17 chr5 126190746 126190806 -26346453 - MER3 DNA MER1_type -6 203 145 4 1547 921 123 0 61 chr5 126190807 126190954 -26346305 + B1_Mur4 SINE Alu 1 138 -12 4 1547 306 0 0 0 chr5 126190954 126190988 -26346271 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 4 1547 500 284 32 19 chr5 126191034 126191192 -26346067 - MER3 DNA MER1_type -44 165 6 4 1547 237 181 38 100 chr5 126191181 126191261 -26345998 + MLT-int LTR MaLR 1534 1608 -127 4 1547 1653 232 10 23 chr5 126191385 126191769 -26345490 - MTEa LTR MaLR 0 379 1 4 1547 980 95 21 14 chr5 126193448 126193667 -26343592 + (TCTA)n Simple_repeat Simple_repeat 1 220 0 4 1547 243 0 0 0 chr5 126193667 126193694 -26343565 + (TATG)n Simple_repeat Simple_repeat 2 28 0 4 1547 261 187 53 0 chr5 126193694 126193720 -26343539 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 4 1547 288 308 50 43 chr5 126194501 126194640 -26342619 + MIRb SINE MIR 1 140 -128 4 1547 192 347 16 31 chr5 126195445 126195573 -26341686 + L2 LINE L2 2534 2659 -760 4 1547 2887 39 0 3 chr5 126195751 126196089 -26341170 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1547 56911 20 15 6 chr5 126196089 126202506 -26334753 - IAPEz-int LTR ERVK 0 6481 8 4 1547 2901 36 0 3 chr5 126202506 126202844 -26334415 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1547 272 306 58 116 chr5 126202983 126203208 -26334051 - ORR1E LTR MaLR -33 337 126 4 1547 757 174 9 5 chr5 126203335 126203558 -26333701 + (CA)n Simple_repeat Simple_repeat 1 224 0 4 1547 468 243 83 28 chr5 126203723 126203867 -26333392 - ORR1E LTR MaLR -206 153 2 4 1547 1741 134 110 21 chr5 126204618 126204954 -26332305 - ORR1D1 LTR MaLR -3 371 6 4 1547 240 287 81 40 chr5 126204966 126205115 -26332144 - L1M5 LINE L1 -2941 3205 3051 4 1547 808 209 84 6 chr5 126205187 126205365 -26331894 - B3A SINE B2 -6 192 1 4 1547 513 241 51 66 chr5 126205830 126206075 -26331184 + LTRIS_Mm LTR ERV1 276 507 0 4 1547 246 266 139 0 chr5 126206079 126206158 -26331101 + B4A SINE B4 181 270 -22 4 1547 195 146 0 0 chr5 126206386 126206427 -26330832 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1547 867 176 87 113 chr5 126206746 126206976 -26330283 + URR1B DNA MER1_type 2 225 0 4 1547 417 332 57 28 chr5 126207450 126207741 -26329518 + LTR41B LTR ERVL 448 712 -56 4 1547 552 275 38 0 chr5 126207752 126207883 -26329376 - ID_B1 SINE B4 -8 216 81 4 1547 1134 183 9 14 chr5 126207911 126208122 -26329137 - B3 SINE B2 -6 210 1 4 1547 180 111 0 0 chr5 126208183 126208210 -26329049 + (TG)n Simple_repeat Simple_repeat 2 28 0 4 1547 501 17 0 0 chr5 126208653 126208711 -26328548 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1547 225 65 0 0 chr5 126209294 126209325 -26327934 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1547 257 224 29 43 chr5 126209332 126209402 -26327857 - B1F1 SINE Alu 0 149 81 4 1547 255 222 16 16 chr5 126209474 126209538 -26327721 + (TA)n Simple_repeat Simple_repeat 1 64 0 4 1547 2798 129 106 34 chr5 126209782 126210280 -26326979 + RLTR20C LTR ERVK 1 534 0 4 1547 2036 180 61 10 chr5 126210640 126211033 -26326226 + MTC LTR MaLR 1 413 -8 4 1547 478 256 22 72 chr5 126211583 126211722 -26325537 - B1F SINE Alu 0 149 18 4 1547 227 260 55 97 chr5 126211601 126211725 -26325534 + YREP_Mm Unknown Unknown 186 305 -1507 4 1547 515 261 146 0 chr5 126211725 126211855 -26325404 - B1_Mur1 SINE Alu 0 149 1 4 1547 227 260 55 97 chr5 126211855 126211875 -26325384 + YREP_Mm Unknown Unknown 306 323 -1489 4 1547 944 222 66 33 chr5 126212116 126212358 -26324901 - RCHARR1 DNA MER1_type 0 974 725 4 1547 1010 281 50 4 chr5 126212355 126212616 -26324643 + B4A SINE B4 6 278 -14 4 1547 1473 239 80 6 chr5 126212653 126213015 -26324244 - RCHARR1 DNA MER1_type -229 745 357 4 1547 426 332 91 70 chr5 126213022 126213252 -26324007 - RCHARR1 DNA MER1_type -733 241 7 4 1547 865 237 10 35 chr5 126214240 126214437 -26322822 + B3A SINE B2 1 192 -6 4 1547 2052 286 67 21 chr5 126214776 126215483 -26321776 - Lx8 LINE L1 0 7473 6735 4 1547 420 235 0 0 chr5 126215603 126215688 -26321571 - RMER15-int LTR ERVL -342 4657 4573 4 1547 3597 150 7 23 chr5 126216032 126216634 -26320625 - Lx3C LINE L1 -168 6808 6217 4 1547 403 139 12 0 chr5 126216634 126216720 -26320539 + Lx3C LINE L1 6888 6974 -2 4 1547 608 293 67 0 chr5 126217081 126217231 -26320028 - RSINE1 SINE B4 -3 162 3 4 1547 185 343 30 10 chr5 126217519 126217619 -26319640 + MIRc SINE MIR 83 184 -84 4 1547 517 304 0 60 chr5 126217855 126218023 -26319236 - MLT1A LTR MaLR -25 349 192 4 1547 292 263 26 26 chr5 126218054 126218130 -26319129 + RMER30 DNA MER1_type 2 77 -125 4 1547 977 125 22 6 chr5 126218130 126218304 -26318955 + B3 SINE B2 2 186 -9 4 1547 425 285 92 0 chr5 126218297 126218329 -26318930 + RMER30 DNA MER1_type 60 91 -111 4 1547 432 37 0 0 chr5 126218329 126218383 -26318876 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1547 425 285 92 0 chr5 126218383 126218480 -26318779 + RMER30 DNA MER1_type 92 200 -2 4 1547 588 264 83 17 chr5 126218823 126219004 -26318255 + B3A SINE B2 6 198 0 4 1547 620 300 129 46 chr5 126219126 126219451 -26317808 + MLT1C LTR MaLR 110 461 -6 5 1547 226 325 8 17 chr5 126219953 126220072 -26317187 + (TG)n Simple_repeat Simple_repeat 1 118 0 5 1547 467 275 15 0 chr5 126220072 126220350 -26316909 + (TCCA)n Simple_repeat Simple_repeat 1 282 0 5 1547 300 350 16 38 chr5 126220228 126220369 -26316890 + (TTCA)n Simple_repeat Simple_repeat 1 140 0 5 1547 1094 88 6 0 chr5 126220369 126220529 -26316730 + (TCCA)n Simple_repeat Simple_repeat 3 163 0 5 1547 300 350 16 38 chr5 126220529 126220571 -26316688 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 5 1547 236 157 20 0 chr5 126220619 126220670 -26316589 - L1ME2z LINE L1 -114 6330 6279 5 1547 207 228 33 0 chr5 126220700 126220792 -26316467 + (TCCA)n Simple_repeat Simple_repeat 4 98 0 5 1547 482 144 0 20 chr5 126221993 126222023 -26315236 + polypyrimidine Low_complexity Low_complexity 69 98 0 5 1547 1328 61 0 6 chr5 126222023 126222203 -26315056 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 1547 482 144 0 20 chr5 126222203 126222271 -26314988 + polypyrimidine Low_complexity Low_complexity 3 68 0 5 1547 198 103 0 0 chr5 126222280 126222309 -26314950 + (CCCCCT)n Simple_repeat Simple_repeat 6 34 0 5 193 612 213 80 14 chr5 126222327 126222465 -26314794 - B1_Mur1 SINE Alu -1 148 2 5 1548 735 283 124 8 chr5 126222816 126223065 -26314194 + B4 SINE B4 1 278 -14 5 1548 441 0 0 0 chr5 126223078 126223127 -26314132 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1548 1057 264 31 24 chr5 126223228 126223515 -26313744 - MTD LTR MaLR 0 419 131 5 1548 453 116 0 0 chr5 126223516 126223585 -26313674 + (CAA)n Simple_repeat Simple_repeat 1 69 0 5 1548 370 250 18 46 chr5 126223587 126223696 -26313563 - MTD LTR MaLR -309 112 7 5 1548 569 294 27 47 chr5 126225055 126225351 -26311908 - B4A SINE B4 -2 290 1 5 1548 359 321 22 32 chr5 126225504 126225672 -26311587 + MIRb SINE MIR 33 198 -70 5 1548 453 36 0 0 chr5 126225958 126226013 -26311246 + (TTA)n Simple_repeat Simple_repeat 2 56 0 5 1548 800 177 31 0 chr5 126226013 126226143 -26311116 - B1_Mur1 SINE Alu -12 137 4 5 1548 557 217 0 24 chr5 126226223 126226346 -26310913 + ORR1D2 LTR MaLR 1 120 -250 5 1548 1275 275 61 61 chr5 126226611 126227282 -26309977 - L1MC4 LINE L1 -667 7375 6697 5 1548 183 42 0 0 chr5 126227282 126227306 -26309953 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1548 1275 275 61 61 chr5 126227306 126227355 -26309904 - L1MC4 LINE L1 -1346 6696 6655 5 1548 685 121 28 23 chr5 126227762 126227939 -26309320 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 5 1548 330 26 0 0 chr5 126227992 126228031 -26309228 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 5 1548 253 0 26 26 chr5 126228072 126228110 -26309149 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 5 1548 921 19 0 0 chr5 126228120 126228227 -26309032 + (CCA)n Simple_repeat Simple_repeat 1 107 0 5 1548 308 317 0 0 chr5 126228242 126228324 -26308935 - L1M4 LINE L1 -6447 95 14 5 1548 558 29 0 0 chr5 126228682 126228750 -26308509 + (GA)n Simple_repeat Simple_repeat 2 69 0 5 1548 528 30 0 0 chr5 126229787 126229853 -26307406 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1548 456 306 0 15 chr5 126230784 126230920 -26306339 - RSINE1 SINE B4 -3 162 29 5 1548 684 277 59 40 chr5 126231325 126231547 -26305712 - B4A SINE B4 -61 231 6 5 1548 425 271 0 0 chr5 126232368 126232584 -26304675 + (TG)n Simple_repeat Simple_repeat 1 216 0 5 1548 210 71 0 0 chr5 126232744 126232772 -26304487 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1548 641 275 129 19 chr5 126232777 126233033 -26304226 - B4A SINE B4 -4 288 5 5 1548 243 61 0 0 chr5 126233556 126233589 -26303670 + (TCC)n Simple_repeat Simple_repeat 3 35 0 5 1548 180 0 0 0 chr5 126233589 126233609 -26303650 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 5 1548 1114 68 0 0 chr5 126233609 126233741 -26303518 - B1_Mm SINE Alu -13 134 3 5 1548 477 258 84 75 chr5 126234837 126235129 -26302130 - MLT1D LTR MaLR -39 428 154 5 1548 2434 169 47 41 chr5 126235142 126235649 -26301610 + RMER15 LTR ERVL 33 542 -33 5 1548 269 330 127 44 chr5 126235837 126236065 -26301194 - MLT1C LTR MaLR -197 270 24 5 1548 1632 213 25 47 chr5 126236305 126236670 -26300589 - ORR1E LTR MaLR -2 357 1 5 1548 471 18 0 0 chr5 126237434 126237490 -26299769 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1548 517 266 110 54 chr5 126238371 126238622 -26298637 + MTD LTR MaLR 1 265 -154 5 1548 262 353 29 19 chr5 126239030 126239134 -26298125 + L2a LINE L2 3321 3425 -1 5 1548 228 100 0 0 chr5 126239459 126239499 -26297760 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1548 1324 89 10 40 chr5 126240169 126240368 -26296891 - B2_Mm1a SINE B2 0 193 1 5 1548 186 43 0 0 chr5 126241413 126241436 -26295823 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1548 813 219 0 68 chr5 126241569 126241745 -26295514 - RSINE1 SINE B4 -1 164 1 5 1548 519 274 6 111 chr5 126242200 126242371 -26294888 + ID_B1 SINE B4 2 154 -70 5 1548 414 254 24 56 chr5 126242371 126242496 -26294763 - RMER5 LTR ERV1 0 534 414 5 1548 234 0 0 0 chr5 126242562 126242588 -26294671 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 5 1548 489 170 227 59 chr5 126242623 126242742 -26294517 + B3A SINE B2 13 151 -47 5 1548 507 107 0 0 chr5 126242744 126242819 -26294440 + (CCCCCT)n Simple_repeat Simple_repeat 6 80 0 5 1548 180 324 40 0 chr5 126242823 126242897 -26294362 + MIR SINE MIR 186 262 0 5 1548 1118 196 9 9 chr5 126243862 126244073 -26293186 + ID_B1 SINE B4 5 215 -9 5 1548 199 0 0 61 chr5 126244073 126244106 -26293153 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1548 195 42 0 0 chr5 126244109 126244133 -26293126 + (CAAAC)n Simple_repeat Simple_repeat 4 27 0 5 1548 253 254 0 42 chr5 126244425 126244511 -26292748 + Lx7 LINE L1 5591 5673 -213 5 1548 443 277 11 11 chr5 126244511 126244606 -26292653 + ID_B1 SINE B4 12 106 -118 5 1548 245 155 82 49 chr5 126244623 126244684 -26292575 + Lx8 LINE L1 5700 5762 -1711 5 1548 429 20 0 0 chr5 126246034 126246084 -26291175 + (TATG)n Simple_repeat Simple_repeat 1 50 0 5 1548 699 220 28 72 chr5 126247139 126247320 -26289939 + B4 SINE B4 2 174 -118 5 1548 955 284 10 87 chr5 126247738 126248050 -26289209 - B4A SINE B4 -2 290 3 5 1548 180 97 0 0 chr5 126248138 126248169 -26289090 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 5 1548 546 191 24 20 chr5 126248175 126248427 -26288832 + CT-rich Low_complexity Low_complexity 1 253 0 5 1548 210 195 49 0 chr5 126248428 126248469 -26288790 + polypyrimidine Low_complexity Low_complexity 2 44 0 5 1548 354 298 11 17 chr5 126248469 126248594 -26288665 - B1F1 SINE Alu -24 123 2 5 1548 1091 273 48 78 chr5 126249897 126250270 -26286989 + MTE2a LTR MaLR 1 362 -17 5 1548 447 261 29 1 chr5 126250751 126250912 -26286347 + L1MCc LINE L1 1387 1550 -4872 5 1548 237 65 0 0 chr5 126250981 126251012 -26286247 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1548 255 170 0 0 chr5 126251474 126251521 -26285738 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1548 790 262 153 0 chr5 126251595 126251843 -26285416 - B4A SINE B4 -6 286 1 5 1548 254 350 0 81 chr5 126252255 126252342 -26284917 + ID4_ SINE ID 4 83 0 5 1548 386 289 158 39 chr5 126252478 126252743 -26284516 - L1MEc LINE L1 -4364 2038 1660 5 1548 707 276 29 0 chr5 126252761 126252931 -26284328 - B3A SINE B2 -22 176 2 5 1548 227 370 93 14 chr5 126253227 126253367 -26283892 + L2b LINE L2 3220 3370 -5 5 1548 209 167 42 0 chr5 126253744 126253792 -26283467 + (TATTG)n Simple_repeat Simple_repeat 4 53 0 5 1548 343 182 63 0 chr5 126253793 126253872 -26283387 - B1_Mur1 SINE Alu 0 147 61 5 1548 601 248 33 0 chr5 126254212 126254333 -26282926 + RSINE1 SINE B4 27 151 -14 5 1548 967 221 25 0 chr5 126254984 126255183 -26282076 + B3 SINE B2 1 204 -12 5 1548 259 245 60 128 chr5 126255371 126255488 -26281771 + RMER12 LTR ERVK 749 857 -465 5 1548 362 216 41 0 chr5 126255488 126255585 -26281674 + (TATG)n Simple_repeat Simple_repeat 2 102 0 5 1548 632 192 17 11 chr5 126255586 126255765 -26281494 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 5 1548 314 226 31 31 chr5 126255768 126255864 -26281395 + (TATG)n Simple_repeat Simple_repeat 3 98 0 5 1548 536 271 38 7 chr5 126255923 126256074 -26281185 - B4 SINE B4 -56 236 81 5 1548 1020 218 14 23 chr5 126256104 126256320 -26280939 - B3 SINE B2 -1 215 2 5 1548 368 244 0 13 chr5 126256342 126256421 -26280838 - B4 SINE B4 -212 80 3 5 1548 620 167 8 0 chr5 126257036 126257156 -26280103 + CT-rich Low_complexity Low_complexity 3 123 0 5 1548 333 123 0 0 chr5 126257398 126257463 -26279796 + (TG)n Simple_repeat Simple_repeat 2 66 0 5 1548 687 244 40 6 chr5 126257885 126258058 -26279201 + B4A SINE B4 8 186 -106 5 1548 207 0 0 0 chr5 126258111 126258134 -26279125 + (CA)n Simple_repeat Simple_repeat 2 24 0 5 1548 396 299 74 21 chr5 126259621 126259794 -26277465 + MIR SINE MIR 14 205 -63 5 1548 1109 232 40 132 chr5 126259864 126260236 -26277023 + ORR1E LTR MaLR 18 355 -4 5 1548 883 308 127 48 chr5 126260241 126260745 -26276514 + MLT1E3 LTR MaLR 73 616 -8 5 1548 459 320 96 86 chr5 126260755 126261279 -26275980 + MLT1E3-int LTR MaLR 1 638 -733 5 1548 258 246 128 60 chr5 126261508 126261625 -26275634 + ORR1E-int LTR MaLR 1442 1566 -397 5 1548 369 302 148 21 chr5 126262387 126262634 -26274625 - MTEb LTR MaLR -2 377 71 5 1548 241 341 49 43 chr5 126262993 126263177 -26274082 + MIR SINE MIR 23 207 -61 5 1548 602 291 82 31 chr5 126264153 126264444 -26272815 + Lx8 LINE L1 6999 7307 -389 5 1548 475 298 0 53 chr5 126264641 126264811 -26272448 - RSINE1 SINE B4 -2 163 3 5 1548 288 0 0 0 chr5 126269340 126269372 -26267887 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5 1548 1051 176 16 11 chr5 126269383 126269573 -26267686 + B3A SINE B2 1 191 -7 6 1548 235 261 31 0 chr5 126270942 126271007 -26266252 + (CATA)n Simple_repeat Simple_repeat 4 70 0 6 1548 828 276 33 58 chr5 126271969 126272211 -26265048 + B4A SINE B4 1 236 -56 6 1548 829 219 10 58 chr5 126273149 126273357 -26263902 - B3A SINE B2 0 198 1 6 1548 181 333 144 0 chr5 126274476 126274566 -26262693 + L2 LINE L2 1507 1609 -1810 6 1548 980 248 60 32 chr5 126274983 126275233 -26262026 - MTE2a LTR MaLR 0 379 123 6 1548 697 244 77 88 chr5 126275232 126275509 -26261750 - MT2A LTR ERVL -226 267 1 6 1548 246 305 111 28 chr5 126275528 126275636 -26261623 + B4A SINE B4 2 118 -174 6 1548 1202 195 158 151 chr5 126275631 126276173 -26261086 - MT2B LTR ERVL -15 569 1 6 1548 705 244 11 86 chr5 126276173 126276348 -26260911 + B4A SINE B4 131 292 0 6 1548 396 0 0 0 chr5 126276371 126276415 -26260844 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1548 493 271 22 8 chr5 126276465 126276599 -26260660 + B1F SINE Alu 4 139 -10 6 1548 233 185 241 0 chr5 126276615 126276669 -26260590 + ID4_ SINE ID 2 68 -15 6 1548 528 16 0 0 chr5 126276674 126276735 -26260524 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1548 570 15 0 0 chr5 126277162 126277229 -26260030 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1548 1519 222 73 27 chr5 126277593 126278001 -26259258 + BGLII_B LTR ERVK 12 438 -3 6 1548 580 263 35 45 chr5 126278008 126278207 -26259052 - HAL1-2a_MD LINE L1 -486 2538 2342 6 1548 585 237 31 31 chr5 126278224 126278385 -26258874 - HAL1-2a_MD LINE L1 -519 2505 2345 6 1548 471 282 0 0 chr5 126278449 126278552 -26258707 - PB1D10 SINE Alu -5 112 10 6 1548 219 348 122 7 chr5 126280126 126280265 -26256994 - MIRb SINE MIR -80 188 34 6 1548 183 129 0 0 chr5 126280288 126280319 -26256940 + (C)n Simple_repeat Simple_repeat 1 31 0 6 1548 299 323 62 87 chr5 126280891 126281179 -26256080 - B4A SINE B4 -8 284 4 6 1548 980 281 25 11 chr5 126281458 126281812 -26255447 - L1MA4A LINE L1 -1089 5961 5634 6 1548 405 0 0 0 chr5 126281898 126281943 -26255316 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1548 186 222 0 0 chr5 126282066 126282120 -26255139 + CT-rich Low_complexity Low_complexity 4 57 0 6 1548 392 215 0 141 chr5 126282158 126282250 -26255009 - PB1D7 SINE Alu -8 112 34 6 1548 316 310 42 42 chr5 126282453 126282571 -26254688 - MER74C LTR ERVL 0 460 343 6 1548 450 0 0 0 chr5 126282571 126282621 -26254638 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1548 296 307 148 32 chr5 126282643 126282798 -26254461 - MER74C LTR ERVL -192 268 96 6 1548 22 0 0 0 chr5 126284583 126284605 -26252654 + AT_rich Low_complexity Low_complexity 1 22 0 6 1548 1075 211 9 9 chr5 126284607 126284822 -26252437 - B3 SINE B2 0 216 2 6 1548 258 32 0 0 chr5 126284978 126285009 -26252250 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1548 780 245 7 0 chr5 126285013 126285168 -26252091 - B3A SINE B2 -42 156 1 6 1548 1106 76 14 0 chr5 126286333 126286478 -26250781 + B1_Mus1 SINE Alu 2 148 0 6 1548 201 74 0 0 chr5 126286478 126286505 -26250754 + (GGA)n Simple_repeat Simple_repeat 3 29 0 6 1548 657 0 0 0 chr5 126286505 126286578 -26250681 + (CAG)n Simple_repeat Simple_repeat 2 74 0 6 1548 2005 121 15 33 chr5 126287181 126287515 -26249744 + ORR1A4 LTR MaLR 1 328 -1 6 1548 1006 222 19 19 chr5 126287809 126288020 -26249239 + B3 SINE B2 6 216 0 6 1548 186 217 0 0 chr5 126288757 126288777 -26248482 + T-rich Low_complexity Low_complexity 31 50 0 6 1548 1210 80 11 0 chr5 126288777 126288953 -26248306 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 6 1548 186 217 0 0 chr5 126288953 126288978 -26248281 + T-rich Low_complexity Low_complexity 6 30 0 6 1548 233 57 0 28 chr5 126288976 126289012 -26248247 + (TCC)n Simple_repeat Simple_repeat 3 37 0 6 1548 2018 230 25 78 chr5 126289103 126289155 -26248104 - MT2A LTR ERVL 0 533 483 6 1548 2206 176 10 5 chr5 126289155 126289543 -26247716 - ORR1B1 LTR MaLR 0 394 5 6 1548 2018 230 25 78 chr5 126289543 126290051 -26247208 - MT2A LTR ERVL -51 482 3 6 1548 373 289 132 0 chr5 126290287 126290408 -26246851 - MLT1A LTR MaLR -83 291 155 6 1548 903 149 0 0 chr5 126290418 126290572 -26246687 + (TTCCC)n Simple_repeat Simple_repeat 2 155 0 6 1548 486 0 0 0 chr5 126290572 126290626 -26246633 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 6 1548 350 281 63 56 chr5 126290630 126290773 -26246486 - MLT1A LTR MaLR -221 144 1 6 1548 216 202 31 75 chr5 126291091 126291166 -26246093 + B1_Mur4 SINE Alu 17 88 -62 6 1548 2569 58 3 69 chr5 126291169 126291519 -26245740 - ORR1A2 LTR MaLR 0 327 1 6 1548 610 312 49 28 chr5 126291571 126291856 -26245403 + RSINE1 SINE B4 1 290 -2 6 1548 675 260 154 28 chr5 126292513 126292766 -26244493 + B4 SINE B4 8 292 0 6 1548 2153 202 23 88 chr5 126292939 126293459 -26243800 - RMER19C LTR ERVK 0 611 126 6 1548 2858 121 177 0 chr5 126293725 126294222 -26243037 - RMER4B LTR ERVK 0 585 1 6 1548 391 305 85 97 chr5 126294273 126294531 -26242728 + MLT1L LTR MaLR 128 382 -228 6 1548 528 30 0 0 chr5 126294912 126294978 -26242281 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1548 571 264 87 29 chr5 126295439 126295611 -26241648 + B4 SINE B4 2 183 -109 6 1548 1940 197 16 8 chr5 126295657 126296021 -26241238 - MTD LTR MaLR 0 419 53 6 1548 1517 246 49 140 chr5 126296027 126296621 -26240638 - RLTR20B3 LTR ERVK -17 560 21 6 1548 552 247 49 61 chr5 126297529 126297693 -26239566 - RSINE1 SINE B4 0 165 4 6 1548 264 30 0 0 chr5 126298746 126298779 -26238480 + (TG)n Simple_repeat Simple_repeat 2 34 0 6 1548 2697 179 25 34 chr5 126298817 126299344 -26237915 - RMER5 LTR ERV1 -10 524 3 6 1548 394 342 19 25 chr5 126299346 126299508 -26237751 + ORR1E LTR MaLR 32 192 -167 6 1548 276 284 0 0 chr5 126299536 126299603 -26237656 + ORR1E LTR MaLR 283 349 -30 6 1548 210 37 0 0 chr5 126299606 126299633 -26237626 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 6 1548 3550 112 37 9 chr5 126300417 126300875 -26236384 - RLTR31B_Mm LTR ERVK 0 557 86 6 1548 180 0 0 0 chr5 126300875 126300895 -26236364 + (TC)n Simple_repeat Simple_repeat 1 20 0 6 1548 3550 112 37 9 chr5 126300895 126300976 -26236283 - RLTR31B_Mm LTR ERVK -472 85 4 6 1548 294 231 13 0 chr5 126301837 126301915 -26235344 + RMER15 LTR ERVL 296 374 -201 6 1548 474 62 24 36 chr5 126302805 126302889 -26234370 + (TCTA)n Simple_repeat Simple_repeat 1 83 0 6 1548 435 119 0 0 chr5 126302905 126302972 -26234287 + (CATA)n Simple_repeat Simple_repeat 2 68 0 6 1548 907 222 90 41 chr5 126302980 126303224 -26234035 - B4 SINE B4 0 292 37 6 1548 1187 272 89 35 chr5 126303224 126303593 -26233666 + MTD LTR MaLR 1 389 -30 6 1548 5745 83 11 3 chr5 126303636 126304418 -26232841 - L1_Mus3 LINE L1 0 6638 5850 6 1548 278 148 19 0 chr5 126304601 126304655 -26232604 + (TATG)n Simple_repeat Simple_repeat 1 55 0 6 1548 347 326 8 15 chr5 126304720 126304851 -26232408 + (TG)n Simple_repeat Simple_repeat 2 131 0 6 1548 204 67 0 0 chr5 126306380 126306410 -26230849 + (C)n Simple_repeat Simple_repeat 1 30 0 6 1548 5738 55 29 1 chr5 126306697 126307411 -26229848 - L1_Mus2 LINE L1 0 6566 5833 6 1548 645 236 69 37 chr5 126307436 126307625 -26229634 - B4 SINE B4 -6 286 92 6 1548 213 241 0 0 chr5 126307717 126307771 -26229488 + CT-rich Low_complexity Low_complexity 3 56 0 6 1548 1114 183 14 23 chr5 126307783 126308001 -26229258 - B3 SINE B2 0 216 1 6 1548 590 222 0 17 chr5 126308803 126308922 -26228337 - MTD LTR MaLR -216 203 87 6 1548 932 296 113 6 chr5 126309375 126309711 -26227548 - MTD LTR MaLR 0 419 48 6 1548 315 325 169 45 chr5 126309689 126309956 -26227303 + MLT-int LTR MaLR 1407 1706 -29 6 1548 735 71 0 0 chr5 126310655 126310753 -26226506 + (TG)n Simple_repeat Simple_repeat 1 98 0 6 1548 508 301 179 15 chr5 126311183 126311379 -26225880 + B4A SINE B4 59 286 -6 6 1548 317 342 95 23 chr5 126311740 126312003 -26225256 + L1MA9 LINE L1 6014 6295 -17 6 1548 347 369 135 19 chr5 126312055 126312315 -26224944 + B4A SINE B4 1 290 -2 6 1548 369 0 0 0 chr5 126312578 126312619 -26224640 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1548 231 262 75 0 chr5 126312929 126313009 -26224250 - L1MC4a LINE L1 -66 7816 7731 6 1548 666 231 110 72 chr5 126313009 126313355 -26223904 - RLTR15 LTR ERVK 0 359 1 6 1548 336 200 469 0 chr5 126313395 126313540 -26223719 - B3 SINE B2 -3 213 1 6 1548 25 51 0 0 chr5 126313953 126313992 -26223267 + AT_rich Low_complexity Low_complexity 1 39 0 6 1548 405 0 0 0 chr5 126314096 126314141 -26223118 + (TG)n Simple_repeat Simple_repeat 1 45 0 6 1548 1057 237 89 35 chr5 126314183 126314498 -26222761 + Lx8 LINE L1 7137 7468 -5 6 1548 459 92 0 0 chr5 126314557 126314622 -26222637 + (TG)n Simple_repeat Simple_repeat 1 65 0 6 1548 1976 127 58 90 chr5 126314713 126315078 -26222181 + ORR1B1 LTR MaLR 42 394 0 6 1548 189 0 0 0 chr5 126315307 126315328 -26221931 + (CCA)n Simple_repeat Simple_repeat 1 21 0 6 1548 454 259 160 59 chr5 126315841 126316181 -26221078 + ORR1E LTR MaLR 3 365 -5 6 1548 306 0 0 0 chr5 126316196 126316230 -26221029 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1548 327 25 0 0 chr5 126316230 126316269 -26220990 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1548 300 53 0 0 chr5 126316877 126316915 -26220344 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1548 381 273 0 0 chr5 126317536 126317657 -26219602 + (TCTCTG)n Simple_repeat Simple_repeat 2 122 0 6 1548 621 72 0 0 chr5 126317658 126317741 -26219518 + (TCC)n Simple_repeat Simple_repeat 1 83 0 6 1548 264 111 0 0 chr5 126319792 126319837 -26217422 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1548 2367 77 3 61 chr5 126319858 126320203 -26217056 - ORR1A2 LTR MaLR 0 327 3 7 1548 1848 193 39 47 chr5 126320228 126320656 -26216603 - ORR1B1 LTR MaLR 0 394 1 7 1548 442 117 10 50 chr5 126320656 126320734 -26216525 - ORR1B1 LTR MaLR -265 102 29 7 1548 1394 204 97 6 chr5 126320837 126321019 -26216240 - ORR1D1 LTR MaLR 0 374 172 7 1548 744 12 0 0 chr5 126321019 126321104 -26216155 + (GA)n Simple_repeat Simple_repeat 2 86 0 7 1548 1394 204 97 6 chr5 126321104 126321262 -26215997 - ORR1D1 LTR MaLR -203 171 4 7 1548 421 250 82 45 chr5 126321795 126321929 -26215330 - MER2 DNA MER2_type -8 337 199 7 1548 400 277 61 145 chr5 126321929 126322157 -26215102 - B4A SINE B4 0 292 84 7 1548 529 231 112 0 chr5 126322168 126322302 -26214957 - MER2 DNA MER2_type -108 237 89 7 1548 1469 258 78 25 chr5 126322325 126322802 -26214457 - Lx8 LINE L1 -2 7471 6970 7 1548 271 247 0 34 chr5 126323250 126323338 -26213921 + L1MB7 LINE L1 6090 6174 -10 7 1548 3628 135 49 54 chr5 126323770 126324382 -26212877 + RMER19C LTR ERVK 3 611 0 7 1548 1074 264 116 86 chr5 126324705 126324909 -26212350 + MTD LTR MaLR 1 195 -224 7 1548 264 30 0 0 chr5 126324909 126324942 -26212317 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 7 1548 1163 52 0 0 chr5 126324942 126325078 -26212181 - B1_Mus1 SINE Alu -12 136 1 7 1548 1074 264 116 86 chr5 126325078 126325119 -26212140 + MTD LTR MaLR 196 224 -195 7 1548 1651 156 130 23 chr5 126325119 126325302 -26211957 + ORR1C2 LTR MaLR 1 189 -195 7 1548 315 0 0 0 chr5 126325302 126325337 -26211922 + (TC)n Simple_repeat Simple_repeat 2 36 0 7 1548 1651 156 130 23 chr5 126325337 126325500 -26211759 + ORR1C2 LTR MaLR 190 383 -1 7 1548 1074 264 116 86 chr5 126325500 126325659 -26211600 + MTD LTR MaLR 225 418 -1 7 1548 2377 151 47 15 chr5 126325785 126326181 -26211078 - MTC LTR MaLR -2 419 9 7 1548 1915 126 8 97 chr5 126326181 126326542 -26210717 + ORR1A4 LTR MaLR 1 329 0 7 1548 728 254 25 25 chr5 126327539 126327737 -26209522 + B3A SINE B2 1 198 0 7 1548 938 141 0 45 chr5 126329333 126329489 -26207770 + B1_Mur4 SINE Alu 2 150 0 7 1548 25 0 0 0 chr5 126331180 126331205 -26206054 + AT_rich Low_complexity Low_complexity 1 25 0 7 1548 213 65 0 0 chr5 126331484 126331515 -26205744 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1548 259 156 0 49 chr5 126331518 126331599 -26205660 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 7 1548 1439 250 65 22 chr5 126331706 126332074 -26205185 - MTD LTR MaLR -34 385 2 7 1548 501 287 32 40 chr5 126332093 126332435 -26204824 + L1MA4 LINE L1 5693 6027 -264 7 1548 230 306 106 111 chr5 126332799 126333016 -26204243 + MLT1A1 LTR MaLR 3 218 -190 7 1548 1081 194 87 5 chr5 126333643 126333850 -26203409 + URR1A DNA MER1_type 1 224 -2 7 1548 732 191 15 0 chr5 126334387 126334523 -26202736 + B3 SINE B2 1 138 -78 7 1548 798 21 0 0 chr5 126334524 126334620 -26202639 + (CA)n Simple_repeat Simple_repeat 2 97 0 7 1548 640 245 0 45 chr5 126334674 126334828 -26202431 + B1_Mur1 SINE Alu 1 147 -2 7 1548 596 252 39 26 chr5 126335251 126335406 -26201853 - ID_B1 SINE B4 -67 157 1 7 1548 527 307 142 26 chr5 126335406 126335794 -26201465 + L1MD LINE L1 2778 3210 -2936 7 1548 237 286 0 0 chr5 126336480 126336543 -26200716 - B1_Mur4 SINE Alu -19 131 69 7 1548 431 252 122 0 chr5 126336489 126336596 -26200663 - ID_B1 SINE B4 -25 199 80 7 1548 360 333 19 13 chr5 126336937 126337092 -26200167 + B4A SINE B4 90 245 -47 7 1548 207 0 0 0 chr5 126337119 126337142 -26200117 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1548 246 281 50 3 chr5 126337500 126337627 -26199632 + MIRc SINE MIR 28 155 -53 7 1548 668 255 229 16 chr5 126338059 126338370 -26198889 + MTD LTR MaLR 43 419 0 7 1548 3638 266 81 12 chr5 126338370 126339298 -26197961 + Lx8 LINE L1 6252 7229 -244 7 1548 2164 212 17 167 chr5 126339298 126340017 -26197242 - RMER19C LTR ERVK 0 611 1 7 1548 3638 266 81 12 chr5 126340017 126340183 -26197076 + Lx8 LINE L1 7230 7422 -51 7 1548 247 298 17 26 chr5 126340183 126340300 -26196959 + GA-rich Low_complexity Low_complexity 1 116 0 7 1548 246 245 0 45 chr5 126340300 126340411 -26196848 + Lx8 LINE L1 7368 7473 0 7 1548 489 248 18 0 chr5 126341163 126341272 -26195987 + B3A SINE B2 3 113 -85 7 1548 653 213 0 34 chr5 126341751 126341897 -26195362 + MTEb LTR MaLR 227 367 -12 7 1548 261 77 0 0 chr5 126342123 126342162 -26195097 - U2 snRNA snRNA -149 39 1 7 1548 356 66 12 50 chr5 126342355 126342435 -26194824 + (TTTG)n Simple_repeat Simple_repeat 3 79 0 7 1548 1165 62 21 0 chr5 126342461 126342605 -26194654 - B1_Mus1 SINE Alu 0 148 2 7 1548 441 0 0 0 chr5 126342806 126342855 -26194404 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1548 553 243 174 40 chr5 126342879 126343132 -26194127 - B4A SINE B4 -2 290 4 7 1548 830 134 191 11 chr5 126343223 126343412 -26193847 - URR1B DNA MER1_type 0 225 3 7 1548 24 53 0 0 chr5 126344538 126344576 -26192683 + AT_rich Low_complexity Low_complexity 1 38 0 7 1548 413 278 51 87 chr5 126344637 126344775 -26192484 + MLT1C LTR MaLR 42 174 -216 7 1548 937 33 0 0 chr5 126345337 126345458 -26191801 + B1_Mm SINE Alu 27 147 0 7 1548 840 221 64 20 chr5 126345491 126345694 -26191565 + B3 SINE B2 5 216 0 7 1548 271 211 132 19 chr5 126346705 126346811 -26190448 - Lx7 LINE L1 -18 7678 7561 7 1548 1755 263 87 6 chr5 126346834 126347328 -26189931 - Lx7 LINE L1 -284 7412 6879 7 1548 256 356 0 0 chr5 126347489 126347562 -26189697 - B4A SINE B4 -2 290 218 7 1548 602 238 8 15 chr5 126347570 126347702 -26189557 - B3 SINE B2 0 216 86 7 1548 213 65 0 0 chr5 126347924 126347955 -26189304 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1548 292 271 89 41 chr5 126348030 126348153 -26189106 + RMER5 LTR ERV1 344 472 -62 7 1548 678 234 53 53 chr5 126348329 126348537 -26188722 + B3A SINE B2 4 211 -5 7 1548 348 321 7 7 chr5 126349088 126349223 -26188036 - L1ME4a LINE L1 -275 5849 5715 7 1548 373 230 117 16 chr5 126349576 126349704 -26187555 + MER5A DNA MER1_type 3 143 -46 7 1548 3156 66 36 0 chr5 126349992 126350385 -26186874 - MTB_Mm LTR MaLR 0 407 1 7 1548 384 343 34 27 chr5 126350985 126351132 -26186127 + RSINE1 SINE B4 2 149 -16 7 1548 495 48 0 0 chr5 126351134 126351196 -26186063 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1548 724 298 40 67 chr5 126351260 126351284 -26185975 - B4 SINE B4 0 292 275 7 1548 417 20 0 0 chr5 126351284 126351334 -26185925 + (TG)n Simple_repeat Simple_repeat 1 50 0 7 1548 724 298 40 67 chr5 126351334 126351608 -26185651 - B4 SINE B4 -18 274 2 7 1548 2181 142 18 18 chr5 126351723 126352109 -26185150 - ORR1B1 LTR MaLR -8 386 1 7 1548 725 179 0 0 chr5 126352646 126352769 -26184490 - B1_Mur3 SINE Alu -21 128 6 7 1548 1175 209 14 5 chr5 126353027 126353238 -26184021 - B3 SINE B2 0 216 4 7 193 288 319 89 42 chr5 126353278 126353537 -26183722 - ORR1E LTR MaLR -10 349 79 7 1549 738 167 220 11 chr5 126354639 126354821 -26182438 + URR1B DNA MER1_type 5 224 -1 7 1549 324 64 0 0 chr5 126354996 126355043 -26182216 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 7 1549 519 225 95 142 chr5 126355058 126355353 -26181906 - B4A SINE B4 -10 282 2 7 1549 330 333 0 0 chr5 126355419 126355500 -26181759 + MER77 LTR ERVL 1 81 -526 7 1549 249 398 44 10 chr5 126355567 126355770 -26181489 + MER77 LTR ERVL 281 490 -117 7 1549 1116 45 0 0 chr5 126355780 126355914 -26181345 + B1_Mus1 SINE Alu 2 135 -13 7 1549 182 37 37 0 chr5 126355917 126355944 -26181315 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 7 1549 255 348 11 11 chr5 126356002 126356095 -26181164 + B4 SINE B4 2 94 -198 7 1549 645 109 82 0 chr5 126356142 126356252 -26181007 - B1_Mus2 SINE Alu -2 145 27 7 1549 538 253 107 20 chr5 126356265 126356414 -26180845 + B4 SINE B4 112 273 -19 7 1549 632 234 92 44 chr5 126357304 126357510 -26179749 + RMER15 LTR ERVL 246 461 -114 7 1549 703 168 15 22 chr5 126357511 126357645 -26179614 + B3A SINE B2 1 133 -65 7 1549 387 0 0 0 chr5 126357666 126357709 -26179550 + (CA)n Simple_repeat Simple_repeat 1 43 0 7 1549 402 285 8 24 chr5 126357713 126357839 -26179420 + RMER15 LTR ERVL 452 575 0 7 1549 1130 150 26 26 chr5 126358699 126358891 -26178368 - B2_Mm2 SINE B2 -2 193 2 7 1549 16412 59 1 4 chr5 126358895 126361646 -26175613 - L1Md_F2 LINE L1 -12 6570 3829 7 1549 9750 80 2 10 chr5 126361647 126362965 -26174294 + L1Md_F2 LINE L1 2503 3810 -2073 7 1549 345 119 68 0 chr5 126363318 126363377 -26173882 - ID4_ SINE ID -18 65 3 7 1549 438 20 0 0 chr5 126363390 126363441 -26173818 + (TTA)n Simple_repeat Simple_repeat 1 51 0 7 1549 460 233 46 8 chr5 126363448 126363578 -26173681 - B1F SINE Alu -9 140 6 7 1549 1102 271 146 24 chr5 126364066 126364519 -26172740 + Lx8 LINE L1 6936 7443 -30 7 1549 505 274 0 38 chr5 126364648 126364781 -26172478 - MTEb LTR MaLR -145 234 107 7 1549 351 311 30 22 chr5 126364777 126364912 -26172347 + B4A SINE B4 114 249 -43 7 1549 298 333 9 9 chr5 126365064 126365170 -26172089 + PB1D10 SINE Alu 2 107 -10 7 1549 1050 52 0 0 chr5 126365223 126365359 -26171900 + B1_Mus1 SINE Alu 7 142 -6 7 1549 447 212 43 104 chr5 126365226 126365361 -26171898 + B4A SINE B4 94 223 -69 7 1549 207 0 0 0 chr5 126365361 126365384 -26171875 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1549 447 212 43 104 chr5 126365384 126365411 -26171848 + B4A SINE B4 224 246 -46 7 1549 1950 102 16 14 chr5 126366215 126366544 -26170715 - IAPLTR2b LTR ERVK 0 357 1 7 1549 801 239 43 0 chr5 126366840 126367024 -26170235 - B3A SINE B2 -5 193 2 7 1549 351 0 0 0 chr5 126367171 126367210 -26170049 + (GGA)n Simple_repeat Simple_repeat 1 39 0 7 1549 433 310 19 39 chr5 126367383 126367588 -26169671 - MER90a LTR ERV1 -39 575 375 7 1549 542 267 0 0 chr5 126368589 126368720 -26168539 - MTE2b LTR MaLR -10 369 239 7 1549 831 206 30 6 chr5 126368784 126368950 -26168309 + B3 SINE B2 19 188 -28 7 1549 342 0 0 0 chr5 126368960 126368998 -26168261 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1549 814 166 229 22 chr5 126369671 126369850 -26167409 - B3 SINE B2 0 216 1 7 1549 344 339 83 49 chr5 126369903 126370080 -26167179 + MER58A DNA MER1_type 4 195 -29 8 1549 1498 212 14 131 chr5 126370080 126370509 -26166750 + MTEa LTR MaLR 1 379 0 8 1549 344 339 83 49 chr5 126370509 126370536 -26166723 + MER58A DNA MER1_type 196 215 -9 8 1549 1292 176 5 0 chr5 126370620 126370842 -26166417 + URR1B DNA MER1_type 3 225 0 8 1549 7579 82 19 0 chr5 126371086 126372065 -26165194 - Lx LINE L1 -6 6648 5651 8 1549 4210 134 3 0 chr5 126372061 126372712 -26164547 + L1_Mur2 LINE L1 3782 4434 -1443 8 1549 487 304 43 61 chr5 126372712 126372835 -26164424 + MER44C DNA MER2_type 65 174 -559 8 1549 2085 125 48 3 chr5 126372835 126373148 -26164111 + ORR1A2 LTR MaLR 1 327 0 8 1549 487 309 64 52 chr5 126373148 126373386 -26163873 + MER44C DNA MER2_type 175 432 -301 8 1549 585 0 0 0 chr5 126373666 126373731 -26163528 + (GA)n Simple_repeat Simple_repeat 2 66 0 8 1549 948 213 55 0 chr5 126373741 126373924 -26163335 - B3 SINE B2 -23 193 1 8 1549 477 254 86 12 chr5 126375454 126375603 -26161656 + B3A SINE B2 5 159 -57 8 1549 3411 162 57 13 chr5 126375603 126376292 -26160967 - MTC-int LTR MaLR -538 720 2 8 1549 1495 169 223 12 chr5 126376295 126376636 -26160623 - MTC LTR MaLR -8 413 1 8 1549 443 222 59 17 chr5 126377093 126377212 -26160047 - ORR1E LTR MaLR -235 124 1 8 1549 304 120 26 26 chr5 126377858 126377935 -26159324 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 8 1549 547 276 11 72 chr5 126378072 126378252 -26159007 - B3A SINE B2 -3 195 27 8 1549 435 19 0 0 chr5 126378332 126378384 -26158875 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1549 940 279 30 26 chr5 126378474 126378743 -26158516 + B4 SINE B4 3 272 -20 8 1549 308 190 60 8 chr5 126379403 126379520 -26157739 + GA-rich Low_complexity Low_complexity 1 123 0 8 1549 941 112 0 22 chr5 126379936 126380118 -26157141 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1549 253 309 0 0 chr5 126380354 126380422 -26156837 + (CA)n Simple_repeat Simple_repeat 1 68 0 8 1549 364 268 6 11 chr5 126380422 126380603 -26156656 + (CATA)n Simple_repeat Simple_repeat 1 180 0 8 1549 365 309 7 7 chr5 126380607 126380747 -26156512 + (CA)n Simple_repeat Simple_repeat 1 140 0 8 1549 453 234 0 0 chr5 126380800 126380911 -26156348 + (CATATA)n Simple_repeat Simple_repeat 4 114 0 8 1549 2466 139 41 24 chr5 126381651 126382065 -26155194 + MTC LTR MaLR 1 421 0 8 1549 291 181 151 14 chr5 126382097 126382137 -26155122 + RMER15 LTR ERVL 492 531 -44 8 1549 432 0 0 0 chr5 126382137 126382185 -26155074 + (TG)n Simple_repeat Simple_repeat 2 49 0 8 1549 291 181 151 14 chr5 126382185 126382217 -26155042 + RMER15 LTR ERVL 532 574 -1 8 1549 189 0 0 0 chr5 126382286 126382307 -26154952 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1549 351 0 0 0 chr5 126382307 126382345 -26154914 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1549 877 190 157 10 chr5 126382346 126382543 -26154716 + URR1A DNA MER1_type 1 226 0 8 1549 614 287 80 76 chr5 126382554 126382979 -26154280 - MT2A LTR ERVL -77 485 1 8 1549 25 31 0 0 chr5 126383565 126383597 -26153662 + AT_rich Low_complexity Low_complexity 1 32 0 8 1549 420 97 0 0 chr5 126383603 126383665 -26153594 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1549 488 297 47 0 chr5 126383665 126383793 -26153466 - B3A SINE B2 -50 148 15 8 1549 495 0 0 0 chr5 126383793 126383848 -26153411 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 8 1549 241 207 49 20 chr5 126383869 126383967 -26153292 - MTC-int LTR MaLR -95 1163 1091 8 1549 22 0 0 0 chr5 126383974 126383996 -26153263 + AT_rich Low_complexity Low_complexity 1 22 0 8 1549 897 166 0 0 chr5 126384104 126384249 -26153010 + B1_Mus1 SINE Alu 4 148 0 8 1549 561 177 0 0 chr5 126385391 126385504 -26151755 + CT-rich Low_complexity Low_complexity 1 113 0 8 1549 764 234 43 86 chr5 126385514 126385613 -26151646 - ID_B1 SINE B4 0 224 145 8 1549 584 237 82 0 chr5 126385613 126385748 -26151511 - B1_Mur3 SINE Alu -2 147 2 8 1549 764 234 43 86 chr5 126385748 126385882 -26151377 - ID_B1 SINE B4 -80 144 1 8 1549 1172 101 6 0 chr5 126386411 126386589 -26150670 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 8 1549 358 276 168 21 chr5 126386727 126387012 -26150247 - L1M3 LINE L1 -1667 4473 4147 8 1549 246 318 0 22 chr5 126387038 126387128 -26150131 - RSINE1 SINE B4 -70 95 8 8 1549 483 156 0 0 chr5 126387052 126387129 -26150130 - B3 SINE B2 -134 82 6 8 1549 457 267 15 8 chr5 126387340 126387472 -26149787 + B4A SINE B4 158 290 -2 8 1549 198 0 0 0 chr5 126387818 126387840 -26149419 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1549 808 210 10 51 chr5 126388915 126389111 -26148148 - B3A SINE B2 0 198 11 8 1549 30 0 0 0 chr5 126389733 126389763 -26147496 + AT_rich Low_complexity Low_complexity 1 30 0 8 1549 462 36 0 0 chr5 126389792 126389848 -26147411 + (TGG)n Simple_repeat Simple_repeat 1 56 0 8 1549 320 106 0 0 chr5 126389860 126389907 -26147352 - RSINE1 SINE B4 -44 121 75 8 1549 520 237 174 0 chr5 126390052 126390305 -26146954 - MER33 DNA MER1_type -21 303 7 8 1549 248 336 5 0 chr5 126390385 126390613 -26146646 + (CA)n Simple_repeat Simple_repeat 1 229 0 8 1549 882 257 198 12 chr5 126391481 126391819 -26145440 - MTD LTR MaLR -18 401 1 8 1549 2190 38 0 8 chr5 126391980 126392243 -26145016 - L1Md_A LINE L1 0 6582 6322 8 1549 333 266 103 26 chr5 126392245 126392361 -26144898 - MLT1B LTR MaLR -265 125 1 8 1549 1821 212 103 0 chr5 126393250 126393628 -26143631 - MTD LTR MaLR 0 419 3 8 1549 1395 149 182 3 chr5 126394034 126394270 -26142989 - RLTR15 LTR ERVK 0 359 88 8 1549 1200 62 0 0 chr5 126394270 126394416 -26142843 - B1_Mus1 SINE Alu 0 148 3 8 1549 1395 149 182 3 chr5 126394416 126394481 -26142778 - RLTR15 LTR ERVK -272 87 5 8 1549 1268 103 21 11 chr5 126395167 126395354 -26141905 - B2_Mm2 SINE B2 -6 189 1 8 1549 229 325 17 25 chr5 126395457 126395577 -26141682 + MLT1I LTR MaLR 96 214 -197 8 1549 644 56 11 0 chr5 126395657 126395746 -26141513 + (GA)n Simple_repeat Simple_repeat 2 91 0 8 1549 2075 156 74 65 chr5 126396757 126397174 -26140085 - MTC LTR MaLR 0 421 1 8 1549 1795 213 55 5 chr5 126397417 126397814 -26139445 + MTD LTR MaLR 3 419 0 8 1549 2061 179 136 42 chr5 126398251 126398824 -26138435 + RMER20B LTR ERVK 1 627 0 8 1549 366 229 70 85 chr5 126398839 126398968 -26138291 + MT2B LTR ERVL 138 264 -337 8 1549 784 127 45 0 chr5 126398867 126399001 -26138258 + B1_Mur4 SINE Alu 11 150 0 8 1549 464 247 30 37 chr5 126399529 126399693 -26137566 + HAL1-2a_MD LINE L1 2345 2507 -517 8 1549 379 232 41 31 chr5 126399734 126399832 -26137427 - L1MC1 LINE L1 -483 5850 5752 8 1549 184 254 0 63 chr5 126399832 126399895 -26137364 - MIR SINE MIR -175 87 29 8 1549 1180 50 0 0 chr5 126400082 126400221 -26137038 + B1_Mus1 SINE Alu 1 139 -9 8 1549 279 0 0 0 chr5 126400221 126400252 -26137007 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 8 1549 549 110 0 0 chr5 126400446 126400528 -26136731 + (CGTG)n Simple_repeat Simple_repeat 1 82 0 8 1549 1967 171 138 0 chr5 126402428 126402797 -26134462 + MTC LTR MaLR 2 421 0 8 1549 266 225 0 22 chr5 126403049 126403140 -26134119 + (TATATG)n Simple_repeat Simple_repeat 6 94 0 8 1549 673 262 143 27 chr5 126403155 126403414 -26133845 - B4 SINE B4 -2 290 2 8 1549 198 0 0 0 chr5 126403689 126403711 -26133548 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1549 234 191 0 0 chr5 126404488 126404535 -26132724 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1549 324 0 0 0 chr5 126404969 126405005 -26132254 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1549 413 257 0 44 chr5 126405042 126405156 -26132103 - B3A SINE B2 -89 109 1 8 1549 639 39 0 0 chr5 126405497 126405575 -26131684 + (TCCC)n Simple_repeat Simple_repeat 4 81 0 8 1549 724 271 18 22 chr5 126405575 126405789 -26131470 - ID_B1 SINE B4 -9 215 2 8 1549 287 298 99 55 chr5 126405976 126406157 -26131102 + Lx8 LINE L1 7283 7471 -2 8 1549 225 0 0 0 chr5 126406256 126406281 -26130978 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1549 259 215 91 15 chr5 126406938 126407004 -26130255 - ORR1E LTR MaLR -9 350 280 8 1549 343 227 0 0 chr5 126407038 126407113 -26130146 - B3A SINE B2 -120 78 4 8 1549 195 42 0 0 chr5 126407250 126407274 -26129985 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1549 998 208 9 19 chr5 126407727 126407938 -26129321 - B3 SINE B2 -5 211 3 8 1549 962 285 61 88 chr5 126408204 126408681 -26128578 + Lx8 LINE L1 7010 7473 0 8 1549 781 208 7 0 chr5 126409310 126409459 -26127800 + B3A SINE B2 1 150 -48 8 1549 441 0 0 0 chr5 126409470 126409519 -26127740 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1549 1209 68 0 0 chr5 126410287 126410434 -26126825 - B1_Mus1 SINE Alu 0 148 2 8 1549 552 53 0 0 chr5 126410478 126410554 -26126705 + (CA)n Simple_repeat Simple_repeat 2 77 0 8 1549 450 0 0 0 chr5 126411522 126411572 -26125687 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1549 703 297 14 34 chr5 126411702 126411911 -26125348 + ID_B1 SINE B4 14 218 -6 8 1549 633 287 0 6 chr5 126412387 126412555 -26124704 - MTEa LTR MaLR -7 372 206 8 1549 1552 203 80 3 chr5 126412539 126412890 -26124369 + MTD LTR MaLR 42 419 0 8 1549 269 270 0 63 chr5 126412890 126412978 -26124281 - MTEa LTR MaLR -297 82 1 8 1549 589 264 84 42 chr5 126413349 126413539 -26123720 - ID_B1 SINE B4 0 224 27 8 1549 231 250 28 0 chr5 126413484 126413556 -26123703 - ID4 SINE ID -2 81 8 8 1549 387 281 183 4 chr5 126413556 126413797 -26123462 - L1MB1 LINE L1 -122 6067 5785 8 1549 434 301 79 74 chr5 126414420 126414610 -26122649 - B4 SINE B4 0 292 102 8 1549 2935 102 0 12 chr5 126415493 126415901 -26121358 - MTB_Mm LTR MaLR -1 406 4 8 1549 1090 122 9 71 chr5 126416173 126416384 -26120875 + Lx9 LINE L1 7317 7514 -130 9 1549 204 220 0 39 chr5 126416385 126416437 -26120822 + (TA)n Simple_repeat Simple_repeat 1 50 0 9 1549 8385 35 1 1 chr5 126416460 126417553 -26119706 - L1Md_F2 LINE L1 0 6582 5490 9 1549 288 0 0 0 chr5 126417650 126417682 -26119577 + (TG)n Simple_repeat Simple_repeat 1 32 0 9 1549 1817 188 38 35 chr5 126417707 126418105 -26119154 - MTD LTR MaLR -2 417 19 9 1549 792 237 8 0 chr5 126418413 126418614 -26118645 + MLT2B2 LTR ERVL 363 567 0 9 1549 986 72 7 0 chr5 126419227 126419365 -26117894 - B1_Mus1 SINE Alu 0 148 10 9 1549 574 248 113 0 chr5 126419367 126419508 -26117751 - B3A SINE B2 -38 160 4 9 1549 468 35 0 0 chr5 126419530 126419588 -26117671 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1549 644 236 36 62 chr5 126419588 126419782 -26117477 - Lx8 LINE L1 -356 7117 6929 9 1549 395 184 143 121 chr5 126419936 126420101 -26117158 - B3 SINE B2 -42 174 3 9 1549 618 332 93 58 chr5 126420496 126421267 -26115992 + L1MEc LINE L1 53 850 -5550 9 1549 796 238 20 31 chr5 126421457 126421652 -26115607 - B3A SINE B2 -4 194 2 9 1549 562 279 69 6 chr5 126422050 126422209 -26115050 + ID_B1 SINE B4 2 170 -54 9 1549 346 148 85 12 chr5 126422137 126422219 -26115040 + B1F SINE Alu 18 105 -44 9 1549 334 291 78 0 chr5 126422329 126422432 -26114827 - MTD LTR MaLR -241 178 68 9 1549 2664 89 78 0 chr5 126422432 126422803 -26114456 + L1_Mus1 LINE L1 6168 6567 0 9 1549 940 47 0 23 chr5 126422811 126422878 -26114381 + (GAGAA)n Simple_repeat Simple_repeat 4 68 0 9 1549 948 106 12 12 chr5 126422878 126423040 -26114219 + (GGGGA)n Simple_repeat Simple_repeat 4 165 0 9 1549 940 47 0 23 chr5 126423040 126423104 -26114155 + (GAGAA)n Simple_repeat Simple_repeat 4 67 0 9 1549 201 147 0 0 chr5 126423103 126423137 -26114122 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 9 1549 637 221 183 6 chr5 126423177 126423341 -26113918 + B3A SINE B2 1 193 -5 9 1549 425 307 8 8 chr5 126424311 126424439 -26112820 - RSINE1 SINE B4 0 165 38 9 1549 655 287 46 30 chr5 126424438 126424675 -26112584 - B4A SINE B4 -51 241 1 9 1549 293 235 47 12 chr5 126424675 126424761 -26112498 - L1MD LINE L1 -574 5785 5697 9 1549 314 98 20 0 chr5 126424813 126424864 -26112395 + (TGGGGG)n Simple_repeat Simple_repeat 3 54 0 9 1549 1282 191 191 17 chr5 126425734 126426114 -26111145 + MTD LTR MaLR 1 419 0 9 1549 471 187 22 0 chr5 126426114 126426200 -26111059 - PB1D10 SINE Alu -18 99 12 9 1549 537 99 0 0 chr5 126426517 126426598 -26110661 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 9 1549 744 94 0 0 chr5 126426611 126426717 -26110542 + (TTTC)n Simple_repeat Simple_repeat 4 109 0 9 1549 555 16 0 0 chr5 126426774 126426838 -26110421 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 9 1549 791 241 0 0 chr5 126426846 126426991 -26110268 - RSINE1 SINE B4 -19 146 2 9 1549 211 315 18 44 chr5 126427571 126427684 -26109575 + MIR SINE MIR 146 255 -7 9 1549 566 203 49 0 chr5 126428020 126428143 -26109116 + RSINE1 SINE B4 13 141 -24 9 1549 378 0 0 0 chr5 126428146 126428188 -26109071 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1549 732 266 16 0 chr5 126428305 126428489 -26108770 + MTEa LTR MaLR 193 379 0 9 1549 963 228 190 6 chr5 126428642 126428969 -26108290 + MTD LTR MaLR 19 405 -14 9 1549 237 65 0 0 chr5 126429477 126429508 -26107751 + (TCTG)n Simple_repeat Simple_repeat 3 33 0 9 1549 754 98 0 47 chr5 126429578 126429728 -26107531 - Lx LINE L1 -9 6645 6503 9 1549 2046 228 7 5 chr5 126430447 126430865 -26106394 + MTD LTR MaLR 1 419 0 9 1549 237 155 0 0 chr5 126431377 126431435 -26105824 + (CA)n Simple_repeat Simple_repeat 2 59 0 9 1549 454 118 21 0 chr5 126431818 126431911 -26105348 + (TG)n Simple_repeat Simple_repeat 1 95 0 9 1549 329 355 112 27 chr5 126433588 126433776 -26103483 + L1MDa LINE L1 420 623 -6010 9 1549 707 309 45 9 chr5 126433913 126434243 -26103016 + L1MDa LINE L1 909 1250 -5383 9 1549 709 199 41 73 chr5 126434267 126434515 -26102744 + ORR1E LTR MaLR 4 251 -119 9 1549 856 277 88 111 chr5 126435025 126435226 -26102033 + L1MDa LINE L1 1670 1875 -4758 9 1549 2606 77 0 0 chr5 126435226 126435553 -26101706 - ORR1A2 LTR MaLR 0 327 1 9 1549 856 277 88 111 chr5 126435553 126435848 -26101411 + L1MDa LINE L1 1876 2161 -4472 9 1549 257 0 0 29 chr5 126435848 126435882 -26101377 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 9 1549 856 277 88 111 chr5 126435882 126436000 -26101259 + L1MDa LINE L1 2162 2252 -4381 9 1549 928 195 60 25 chr5 126436000 126436200 -26101059 + B3 SINE B2 2 208 -8 9 1549 856 277 88 111 chr5 126436200 126436225 -26101034 + L1MDa LINE L1 2253 2267 -4366 9 1549 618 234 161 11 chr5 126436225 126436411 -26100848 + B3 SINE B2 1 214 -2 9 1549 856 277 88 111 chr5 126436411 126436669 -26100590 + L1MDa LINE L1 2268 2549 -4084 9 1549 323 331 65 14 chr5 126436787 126436925 -26100334 - RSINE1 SINE B4 -19 146 2 9 1549 243 291 23 0 chr5 126437518 126437604 -26099655 - ID_B1 SINE B4 -1 223 136 9 1549 405 0 0 0 chr5 126438028 126438073 -26099186 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1549 273 57 0 0 chr5 126438327 126438362 -26098897 + (GGA)n Simple_repeat Simple_repeat 1 35 0 9 1549 27 0 0 0 chr5 126438544 126438571 -26098688 + AT_rich Low_complexity Low_complexity 1 27 0 9 1549 663 217 140 21 chr5 126439410 126439443 -26097816 - B3 SINE B2 0 216 187 9 1549 419 92 0 15 chr5 126439443 126439509 -26097750 + (TATG)n Simple_repeat Simple_repeat 2 66 0 9 1549 663 217 140 21 chr5 126439509 126439668 -26097591 - B3 SINE B2 -30 186 2 9 1549 772 293 80 29 chr5 126439978 126440450 -26096809 - RMER15 LTR ERVL 0 575 16 9 1549 405 0 0 0 chr5 126440621 126440666 -26096593 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 1549 570 260 21 68 chr5 126440953 126441143 -26096116 - B3A SINE B2 -17 181 1 9 1549 183 100 0 0 chr5 126441942 126441972 -26095287 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 9 1549 211 250 18 0 chr5 126442092 126442148 -26095111 - MIR SINE MIR -66 196 140 9 1549 553 301 198 6 chr5 126442166 126442494 -26094765 + L1MB7 LINE L1 5601 5994 -190 9 1549 2105 165 84 18 chr5 126442494 126442876 -26094383 - MTB_Mm LTR MaLR 0 407 1 9 1549 553 310 188 21 chr5 126442876 126442937 -26094322 + L1MB7 LINE L1 5988 6051 -127 9 1549 718 227 25 56 chr5 126444489 126444685 -26092574 + B3A SINE B2 9 198 0 9 1549 788 268 96 12 chr5 126445640 126445889 -26091370 + B4 SINE B4 5 274 -18 9 1549 974 272 36 0 chr5 126447245 126447495 -26089764 - Lx8 LINE L1 -700 6773 6515 9 1549 425 170 9 0 chr5 126448163 126448275 -26088984 + (TG)n Simple_repeat Simple_repeat 2 114 0 9 1549 314 58 0 37 chr5 126448278 126448332 -26088927 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 9 1549 399 231 19 8 chr5 126448370 126448638 -26088621 + CT-rich Low_complexity Low_complexity 1 271 0 9 1549 415 202 32 0 chr5 126449273 126449367 -26087892 - PB1D10 SINE Alu -14 103 7 9 1549 211 310 34 11 chr5 126449294 126449382 -26087877 - B4A SINE B4 -125 167 78 9 1549 244 231 128 46 chr5 126450416 126450525 -26086734 + MER67C LTR ERV1 3 120 -591 9 1549 233 163 20 0 chr5 126450537 126450586 -26086673 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1549 976 268 94 82 chr5 126450598 126450817 -26086442 + MER67C LTR ERV1 143 386 -325 9 1549 366 23 0 0 chr5 126450817 126450860 -26086399 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1549 976 268 94 82 chr5 126450860 126450873 -26086386 + MER67C LTR ERV1 387 388 -323 9 1549 1221 171 14 5 chr5 126450873 126451084 -26086175 + B3 SINE B2 4 216 0 9 1549 976 268 94 82 chr5 126451084 126451341 -26085918 + MER67C LTR ERV1 389 639 -72 9 1549 258 32 0 0 chr5 126451350 126451381 -26085878 + (GA)n Simple_repeat Simple_repeat 2 32 0 9 1549 940 266 45 31 chr5 126452599 126452886 -26084373 + B4 SINE B4 2 292 0 9 1549 389 242 8 0 chr5 126452897 126453025 -26084234 + (CA)n Simple_repeat Simple_repeat 2 130 0 9 1549 269 167 70 70 chr5 126454060 126454131 -26083128 - B3 SINE B2 -60 156 86 9 1549 181 57 0 54 chr5 126454143 126454180 -26083079 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 9 1549 911 189 126 0 chr5 126454507 126454536 -26082723 - B3 SINE B2 0 216 187 9 1549 261 57 0 0 chr5 126454536 126454571 -26082688 + (TATG)n Simple_repeat Simple_repeat 4 38 0 9 1549 911 189 126 0 chr5 126454571 126454731 -26082528 - B3 SINE B2 -30 186 5 9 1549 549 262 14 0 chr5 126455626 126455767 -26081492 + B3A SINE B2 1 143 -55 9 1549 333 100 0 0 chr5 126455772 126455822 -26081437 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1549 208 372 0 8 chr5 126455845 126455935 -26081324 + (CA)n Simple_repeat Simple_repeat 2 91 0 9 1549 183 80 0 0 chr5 126455935 126455960 -26081299 + (TA)n Simple_repeat Simple_repeat 1 25 0 9 1549 208 372 0 8 chr5 126455960 126455991 -26081268 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1549 253 277 0 0 chr5 126456988 126457053 -26080206 + MIR SINE MIR 67 131 -131 9 1549 273 349 65 9 chr5 126457126 126457340 -26079919 - LTR33 LTR ERVL 0 515 290 9 1549 2244 117 0 21 chr5 126457665 126457998 -26079261 + ORR1A3 LTR MaLR 1 326 0 9 1549 527 275 130 9 chr5 126458087 126458265 -26078994 + B3A SINE B2 2 202 -14 9 1549 215 61 30 0 chr5 126458265 126458298 -26078961 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 9 1549 214 270 40 0 chr5 126459141 126459215 -26078044 + (TG)n Simple_repeat Simple_repeat 2 78 0 9 1549 892 240 39 46 chr5 126459220 126459500 -26077759 - B4A SINE B4 -14 278 1 9 1549 1089 281 0 20 chr5 126461953 126462247 -26075012 - B4 SINE B4 -4 288 1 9 1549 24 32 0 0 chr5 126462247 126462278 -26074981 + AT_rich Low_complexity Low_complexity 1 31 0 9 1549 1988 99 85 18 chr5 126462629 126462959 -26074300 - RMER19A LTR ERVK 0 737 386 9 1549 638 139 0 39 chr5 126462942 126463069 -26074190 - RMER19A LTR ERVK -615 122 1 9 1549 716 258 35 30 chr5 126463767 126463967 -26073292 + B3 SINE B2 16 216 0 9 1549 1323 240 10 60 chr5 126464770 126465156 -26072103 + ORR1D2 LTR MaLR 4 370 0 9 1549 197 328 15 15 chr5 126465969 126466034 -26071225 - L2b LINE L2 -39 3336 3272 9 1549 970 239 57 46 chr5 126466174 126466437 -26070822 - B4 SINE B4 -18 274 9 9 1549 3127 53 18 15 chr5 126466548 126466947 -26070312 + MTB LTR MaLR 1 400 0 9 1549 674 197 7 0 chr5 126467552 126467704 -26069555 + (TA)n Simple_repeat Simple_repeat 1 153 0 1 1549 245 169 0 17 chr5 126467766 126467826 -26069433 + CT-rich Low_complexity Low_complexity 4 62 0 1 1549 1173 263 37 17 chr5 126467837 126468131 -26069128 - Lx8 LINE L1 -325 7148 6849 1 1549 1126 233 15 37 chr5 126468165 126468433 -26068826 + Lx8 LINE L1 6583 6844 -629 1 1549 582 231 15 0 chr5 126469409 126469543 -26067716 - Lx8 LINE L1 -153 7320 7185 1 1549 742 239 16 33 chr5 126469562 126469744 -26067515 + B3 SINE B2 1 179 -37 1 1549 217 75 0 48 chr5 126470015 126470057 -26067202 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 1 1549 23 33 0 0 chr5 126470380 126470410 -26066849 + AT_rich Low_complexity Low_complexity 1 30 0 1 1549 1359 228 110 11 chr5 126471125 126471238 -26066021 + MTD LTR MaLR 1 114 -305 1 1549 483 18 0 0 chr5 126471238 126471294 -26065965 + (TAG)n Simple_repeat Simple_repeat 1 56 0 1 1549 1359 229 111 11 chr5 126471294 126471562 -26065697 + MTD LTR MaLR 115 398 -21 1 1549 283 254 117 56 chr5 126471817 126471846 -26065413 - B2_Mm2 SINE B2 -5 190 164 1 1549 414 85 0 0 chr5 126471846 126471905 -26065354 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1549 418 240 170 4 chr5 126471905 126472054 -26065205 - B3A SINE B2 -32 163 1 1 1549 209 83 0 27 chr5 126472412 126472449 -26064810 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1549 276 100 0 0 chr5 126472579 126472619 -26064640 + (T)n Simple_repeat Simple_repeat 1 40 0 1 1549 261 325 58 8 chr5 126472745 126472866 -26064393 + L1MEc LINE L1 145 271 -6129 1 1549 617 311 137 32 chr5 126472998 126473566 -26063693 + L1MEc LINE L1 3783 4425 -1894 1 1549 213 39 0 0 chr5 126473566 126473592 -26063667 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1 1549 546 315 165 31 chr5 126473592 126473671 -26063588 + L1MEc LINE L1 4426 4516 -1803 1 1549 489 99 0 0 chr5 126473860 126473941 -26063318 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1549 800 203 20 0 chr5 126473942 126474090 -26063169 - B3A SINE B2 -47 151 1 1 1549 1281 102 11 21 chr5 126475139 126475329 -26061930 + B2_Mm1t SINE B2 1 188 -5 1 1549 374 222 19 23 chr5 126475387 126475658 -26061601 + (TG)n Simple_repeat Simple_repeat 1 269 0 1 1549 299 187 28 9 chr5 126475689 126475797 -26061462 + (TG)n Simple_repeat Simple_repeat 1 110 0 1 1549 891 277 59 8 chr5 126475797 126476052 -26061207 - B4A SINE B4 0 292 25 1 1549 234 0 0 0 chr5 126476375 126476401 -26060858 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1549 632 184 26 0 chr5 126476406 126476520 -26060739 + RSINE1 SINE B4 15 131 -34 1 1549 1106 68 0 20 chr5 126476537 126476688 -26060571 + B1_Mus1 SINE Alu 1 148 0 1 1549 23 33 0 0 chr5 126478145 126478175 -26059084 + AT_rich Low_complexity Low_complexity 1 30 0 1 1549 581 275 45 45 chr5 126478368 126478566 -26058693 - B3A SINE B2 0 198 1 1 1549 371 209 56 28 chr5 126479869 126479977 -26057282 - MTC LTR MaLR -39 382 272 1 1549 502 253 78 73 chr5 126480054 126480246 -26057013 + B3A SINE B2 1 193 -5 1 1549 696 253 99 85 chr5 126480263 126480626 -26056633 - RLTR9A LTR ERVK 0 368 1 1 1549 639 247 170 25 chr5 126480704 126480945 -26056314 - B4 SINE B4 -7 285 10 1 1549 1416 239 68 20 chr5 126481186 126481562 -26055697 + MTD LTR MaLR 25 403 -16 1 1549 530 197 0 39 chr5 126481597 126481855 -26055404 + GA-rich Low_complexity Low_complexity 1 247 0 1 1549 464 179 0 77 chr5 126481899 126482093 -26055166 + GA-rich Low_complexity Low_complexity 1 179 0 1 1549 447 106 0 0 chr5 126483044 126483110 -26054149 + (CCCCCT)n Simple_repeat Simple_repeat 1 66 0 1 1549 450 0 0 0 chr5 126483201 126483251 -26054008 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1549 277 254 140 0 chr5 126483716 126483830 -26053429 - ORR1D2 LTR MaLR 0 370 241 1 1549 486 200 142 20 chr5 126484004 126484152 -26053107 - B3 SINE B2 -4 212 47 1 1550 272 176 0 0 chr5 126484559 126484610 -26052649 - B3 SINE B2 -165 51 1 1 1550 290 275 0 14 chr5 126484653 126484723 -26052536 + tRNA-Ala-GCY_ tRNA tRNA 4 72 -3 1 1550 251 339 65 5 chr5 126484848 126485032 -26052227 + L1M5 LINE L1 4115 4309 -1837 1 1550 375 335 40 25 chr5 126485634 126485836 -26051423 + L1M5 LINE L1 5075 5279 -867 1 1550 330 333 9 0 chr5 126485839 126485944 -26051315 + PB1D10 SINE Alu 1 106 -11 1 1550 333 309 32 34 chr5 126486062 126486281 -26050978 + L1M5 LINE L1 5365 5585 -577 1 1550 334 187 22 0 chr5 126486472 126486563 -26050696 + GA-rich Low_complexity Low_complexity 4 96 0 1 1550 412 300 74 87 chr5 126486567 126486862 -26050397 + B4A SINE B4 8 292 0 1 1550 806 98 8 0 chr5 126486914 126487036 -26050223 + (GAAA)n Simple_repeat Simple_repeat 4 126 0 1 1550 441 50 0 0 chr5 126487184 126487244 -26050015 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1550 305 135 11 33 chr5 126487244 126487336 -26049923 + (CA)n Simple_repeat Simple_repeat 2 91 0 1 1550 694 174 22 36 chr5 126490087 126490224 -26047035 + B1_Mur1 SINE Alu 3 137 -12 1 1550 1050 248 119 6 chr5 126490275 126490587 -26046672 + Lx8 LINE L1 7122 7468 -5 1 1550 779 276 159 0 chr5 126491156 126491643 -26045616 - L1MC1 LINE L1 -1 6332 5769 1 1550 451 269 8 0 chr5 126491940 126492059 -26045200 + L1MA4 LINE L1 5645 5764 -533 1 1550 1936 183 66 37 chr5 126492065 126492548 -26044711 + RMER20A LTR ERVK 11 507 -9 1 1550 368 330 89 48 chr5 126492553 126492744 -26044515 + L1MA4 LINE L1 5727 5933 -1763 1 1550 627 125 0 0 chr5 126492744 126492848 -26044411 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 1550 244 330 89 48 chr5 126492848 126492904 -26044355 + L1MA4 LINE L1 5934 5984 -1712 1 1550 862 194 20 61 chr5 126492987 126493020 -26044239 + L1_Mus1 LINE L1 5965 5993 -574 1 1550 2964 79 14 37 chr5 126493020 126493454 -26043805 - L1Md_F2 LINE L1 0 6582 6159 1 1550 1073 137 6 0 chr5 126493454 126493622 -26043637 + L1Md_F2 LINE L1 5997 6165 -417 1 1550 312 218 77 0 chr5 126493635 126493713 -26043546 - Lx6 LINE L1 -1135 6338 6255 1 1550 826 180 135 21 chr5 126493724 126493917 -26043342 - B3 SINE B2 0 216 2 1 1550 567 135 0 0 chr5 126493944 126494040 -26043219 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 1550 357 277 109 36 chr5 126494043 126494391 -26042868 - Lx6 LINE L1 -1308 6165 5789 1 1550 7166 74 0 3 chr5 126494403 126495351 -26041908 - L1MC1 LINE L1 -926 5377 4405 1 1550 486 19 0 0 chr5 126495351 126495404 -26041855 + L1Md_F2 LINE L1 5533 5585 -298 1 1550 8189 48 8 3 chr5 126495405 126496395 -26040864 + L1Md_F2 LINE L1 5587 6581 -1 1 1550 21 36 0 0 chr5 126496425 126496453 -26040806 + AT_rich Low_complexity Low_complexity 1 28 0 1 1550 4108 153 95 60 chr5 126496661 126497532 -26039727 + RMER19B LTR ERVK 1 902 0 1 1550 278 25 0 111 chr5 126498145 126498235 -26039024 + (TTCTCC)n Simple_repeat Simple_repeat 3 82 0 1 1550 894 149 11 11 chr5 126498235 126498412 -26038847 + CT-rich Low_complexity Low_complexity 1 177 0 1 1550 293 241 0 0 chr5 126500139 126500222 -26037037 + Lx7 LINE L1 7614 7696 0 1 1550 1131 151 172 87 chr5 126500571 126500926 -26036333 + RMER17B LTR ERVK 2 386 -572 2 1550 2056 173 35 12 chr5 126501176 126501580 -26035679 - MTC LTR MaLR -8 413 1 3 1550 279 322 29 6 chr5 126502412 126502584 -26034675 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 4 1550 312 296 9 9 chr5 126502694 126502810 -26034449 + (TCCA)n Simple_repeat Simple_repeat 4 119 0 5 1550 353 109 16 0 chr5 126503575 126503639 -26033620 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 6 1550 458 331 73 38 chr5 126504323 126504694 -26032565 + MT2A LTR ERVL 146 529 -4 7 1550 356 154 16 54 chr5 126505048 126505233 -26032026 + (TG)n Simple_repeat Simple_repeat 1 178 0 8 1550 243 0 0 0 chr5 126505233 126505260 -26031999 + (TAGTG)n Simple_repeat Simple_repeat 4 30 0 9 1550 418 167 0 25 chr5 126505884 126505964 -26031295 - PB1 SINE Alu -48 79 2 1 1550 262 340 95 7 chr5 126506939 126507087 -26030172 - Arthur1A DNA Tip100 -3 174 14 1 1550 311 251 231 16 chr5 126507173 126507359 -26029900 - MLT2B5 LTR ERVL -66 489 264 1 1550 1357 241 94 8 chr5 126507376 126507750 -26029509 + MTD LTR MaLR 18 405 -14 1 1550 306 161 15 46 chr5 126507751 126507816 -26029443 - MLT2B5 LTR ERVL -246 308 246 1 1550 246 311 14 50 chr5 126507879 126508018 -26029241 - RLTR41 LTR ERV1 -62 384 251 1 1550 726 262 146 10 chr5 126508481 126508789 -26028470 - MLT2B5 LTR ERVL -365 352 3 1 1550 1182 129 100 0 chr5 126509943 126510153 -26027106 + RMER4B LTR ERVK 18 248 -337 1 1550 221 172 16 0 chr5 126510173 126510237 -26027022 + (CTG)n Simple_repeat Simple_repeat 2 66 0 1 1550 635 214 43 21 chr5 126510242 126510502 -26026757 + RMER4B LTR ERVK 272 576 -9 1 1550 183 129 0 0 chr5 126510516 126510547 -26026712 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1550 420 263 55 70 chr5 126510582 126510782 -26026477 - B4A SINE B4 -48 244 48 1 1550 539 239 128 47 chr5 126511381 126511592 -26025667 - Lx8 LINE L1 0 7473 7246 2 1550 496 219 9 0 chr5 126511716 126511821 -26025438 + B3A SINE B2 2 107 -91 2 1550 315 0 0 0 chr5 126512229 126512264 -26024995 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1550 2455 141 139 16 chr5 126512651 126513148 -26024111 - RMER4B LTR ERVK -12 573 16 2 1550 910 190 34 44 chr5 126513228 126513432 -26023827 + B3 SINE B2 2 203 -13 2 1550 422 161 361 0 chr5 126513497 126513627 -26023632 - MTD LTR MaLR -58 361 185 2 1550 243 0 0 0 chr5 126514292 126514319 -26022940 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1550 1113 58 0 0 chr5 126515839 126515976 -26021283 + B1_Mus1 SINE Alu 5 141 -7 2 1550 589 178 0 0 chr5 126516551 126516652 -26020607 + B3A SINE B2 1 101 -97 2 1550 1128 95 0 0 chr5 126516659 126516807 -26020452 + B1_Mus1 SINE Alu 1 148 0 2 1550 301 145 48 0 chr5 126516856 126516939 -26020320 + (TCTG)n Simple_repeat Simple_repeat 2 88 0 3 1550 225 0 0 0 chr5 126516940 126516965 -26020294 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1550 22 88 0 0 chr5 126517514 126517571 -26019688 + AT_rich Low_complexity Low_complexity 1 57 0 3 1550 572 213 12 191 chr5 126518092 126518260 -26018999 - B3A SINE B2 0 198 57 3 1550 459 269 21 0 chr5 126518297 126518442 -26018817 - B4 SINE B4 -61 231 84 3 1550 423 0 0 0 chr5 126518881 126518928 -26018331 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1550 218 136 0 22 chr5 126518948 126518993 -26018266 + (TTA)n Simple_repeat Simple_repeat 3 46 0 3 1550 2443 87 12 3 chr5 126519102 126519426 -26017833 + ORR1A2 LTR MaLR 1 327 0 3 1550 391 325 158 25 chr5 126519448 126519852 -26017407 - Arthur1 DNA Tip100 -3348 599 142 3 1550 309 229 120 28 chr5 126519881 126519989 -26017270 - MTEa LTR MaLR -15 364 247 3 1550 262 269 51 0 chr5 126520117 126520195 -26017064 - MTEa LTR MaLR -277 82 1 3 1550 459 183 60 9 chr5 126520567 126520683 -26016576 + B3 SINE B2 86 207 -9 4 1550 376 306 0 36 chr5 126520897 126521036 -26016223 + CT-rich Low_complexity Low_complexity 5 138 0 4 1550 810 234 30 5 chr5 126522682 126522884 -26014375 + B3 SINE B2 2 208 -8 4 1550 315 214 0 0 chr5 126522889 126522959 -26014300 + GA-rich Low_complexity Low_complexity 4 73 0 4 1550 702 281 29 5 chr5 126522959 126523163 -26014096 + B3 SINE B2 1 209 -7 4 1550 1128 168 38 9 chr5 126523196 126523406 -26013853 + B3 SINE B2 1 216 0 4 1550 456 19 0 0 chr5 126523420 126523473 -26013786 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1550 369 0 0 0 chr5 126523473 126523514 -26013745 + (TCC)n Simple_repeat Simple_repeat 3 43 0 4 1550 231 317 0 45 chr5 126523528 126523594 -26013665 - ID4 SINE ID -18 65 3 4 1550 252 245 198 64 chr5 126523994 126524151 -26013108 - L1MA6 LINE L1 -6 6294 6117 4 1550 1585 206 77 77 chr5 126524539 126525060 -26012199 - RLTR11A LTR ERVK -6 522 2 5 1550 504 336 118 73 chr5 126525283 126525844 -26011415 - MER82 DNA MER2_type -53 600 15 5 1550 281 357 9 0 chr5 126525851 126525963 -26011296 + L1MA8 LINE L1 5995 6107 -184 5 1550 789 235 48 14 chr5 126525989 126526196 -26011063 + B3 SINE B2 3 216 0 5 1550 972 203 76 0 chr5 126526207 126526404 -26010855 + B3 SINE B2 2 213 -3 5 1550 478 199 85 55 chr5 126526426 126526591 -26010668 + L1MA8 LINE L1 6116 6285 -6 5 1550 2258 7 4 0 chr5 126527757 126528032 -26009227 - ORR1A0 LTR MaLR 0 346 71 5 1550 2828 31 3 3 chr5 126528032 126528359 -26008900 - IAPLTR2b LTR ERVK 0 327 1 5 1550 5815 59 15 8 chr5 126528361 126529100 -26008159 - IAPEz-int LTR ERVK -2 6479 5736 5 1550 10400 68 63 78 chr5 126529099 126530840 -26006419 - IAPEz-int LTR ERVK -4845 1636 10 5 1550 2798 37 3 3 chr5 126530845 126531172 -26006087 - IAPLTR2b LTR ERVK 0 327 1 5 1550 569 49 0 0 chr5 126531172 126531248 -26006011 - ORR1A0 LTR MaLR -269 77 2 5 1550 532 278 68 58 chr5 126531604 126531810 -26005449 + B4A SINE B4 17 224 -68 5 1550 2873 16 0 0 chr5 126532020 126532342 -26004917 - RLTRETN_Mm LTR ERVK 0 322 1 5 1550 271 70 0 23 chr5 126533126 126533170 -26004089 + RLTR10 LTR ERVK 348 390 0 6 1550 8116 41 2 2 chr5 126533180 126534138 -26003121 + RLTR10-int LTR ERVK 41 998 -989 6 1550 393 224 62 39 chr5 126534202 126534332 -26002927 + RLTR10-int LTR ERVK 1462 1594 -5987 6 1550 8992 12 4 2 chr5 126534414 126535409 -26001850 + RLTR10-int LTR ERVK 990 1986 -1 6 1550 2941 41 2 128 chr5 126535409 126535855 -26001404 + RLTR10 LTR ERVK 1 390 0 6 1550 25 31 0 0 chr5 126537115 126537147 -26000112 + AT_rich Low_complexity Low_complexity 1 32 0 6 1550 28 38 0 19 chr5 126537186 126537207 -26000052 + AT_rich Low_complexity Low_complexity 1 21 0 6 1550 3176 79 77 2 chr5 126537207 126537370 -25999889 - MT2C_Mm LTR ERVL 0 475 289 6 1550 414 0 0 0 chr5 126537370 126537416 -25999843 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1550 3176 79 77 2 chr5 126537416 126537694 -25999565 - MT2C_Mm LTR ERVL -187 288 2 6 1550 28 38 0 19 chr5 126537694 126537725 -25999534 + AT_rich Low_complexity Low_complexity 1 31 0 6 1550 541 170 0 29 chr5 126537801 126537971 -25999288 + (TG)n Simple_repeat Simple_repeat 1 165 0 6 1550 300 70 0 0 chr5 126538040 126538083 -25999176 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1550 183 223 0 26 chr5 126538149 126538264 -25998995 + (TG)n Simple_repeat Simple_repeat 1 112 0 6 1550 351 0 0 0 chr5 126538502 126538541 -25998718 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1550 1109 150 105 0 chr5 126539995 126540266 -25996993 + ORR1A2 LTR MaLR 13 394 0 7 1550 620 247 28 81 chr5 126540672 126540883 -25996376 + Lx8 LINE L1 7197 7396 -77 7 1550 2511 131 2 10 chr5 126540913 126541321 -25995938 + MTC LTR MaLR 15 419 -2 7 1550 394 283 13 131 chr5 126542429 126542463 -25994796 - MTEa LTR MaLR -169 210 144 7 1550 396 293 38 0 chr5 126542463 126542596 -25994663 - MLT2B5 LTR ERVL -391 210 73 7 1550 394 283 13 131 chr5 126542596 126542665 -25994594 - MTEa LTR MaLR -169 143 3 7 1550 916 172 200 0 chr5 126543541 126543721 -25993538 - B3 SINE B2 0 216 1 7 1550 561 285 44 50 chr5 126544091 126544250 -25993009 + B3A SINE B2 3 165 -33 7 1550 207 0 0 0 chr5 126544250 126544273 -25992986 + (CA)n Simple_repeat Simple_repeat 2 24 0 7 1550 549 0 0 0 chr5 126544273 126544333 -25992926 + (GA)n Simple_repeat Simple_repeat 2 62 0 7 1550 561 285 44 50 chr5 126544333 126544353 -25992906 + B3A SINE B2 166 181 -17 7 1550 687 289 10 24 chr5 126545541 126545750 -25991509 + MER110 LTR ERV1 70 275 -216 8 1550 24 32 0 0 chr5 126546029 126546060 -25991199 + AT_rich Low_complexity Low_complexity 1 31 0 8 1550 2548 169 14 32 chr5 126546557 126547053 -25990206 - RMER19C LTR ERVK -17 594 108 8 1550 403 195 59 0 chr5 126547093 126547200 -25990059 - B3A SINE B2 -59 136 12 8 1550 2133 125 0 0 chr5 126547200 126547519 -25989740 + ORR1A2 LTR MaLR 1 319 -8 8 1550 1403 215 66 88 chr5 126548207 126548425 -25988834 - MTD LTR MaLR -16 391 181 8 1550 951 194 52 10 chr5 126548425 126548618 -25988641 - B3 SINE B2 -11 205 5 8 1550 1403 198 65 102 chr5 126548618 126548821 -25988438 - MTD LTR MaLR -214 205 1 8 1550 718 267 17 0 chr5 126549458 126549634 -25987625 - B3A SINE B2 -19 179 1 8 1550 262 254 0 0 chr5 126549984 126550039 -25987220 + GA-rich Low_complexity Low_complexity 2 56 0 8 1550 1350 234 72 93 chr5 126550116 126550503 -25986756 - MTE2b LTR MaLR 0 379 1 8 1550 464 305 109 20 chr5 126551714 126552001 -25985258 - Lx7 LINE L1 -285 7411 7116 9 1550 486 283 6 25 chr5 126552362 126552525 -25984734 - MER46C DNA MER2_type 0 338 179 9 1550 197 33 33 0 chr5 126553295 126553325 -25983934 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1550 434 172 0 10 chr5 126553391 126553491 -25983768 + (CATA)n Simple_repeat Simple_repeat 4 102 0 9 1550 767 264 69 22 chr5 126553531 126553780 -25983479 - Lx7 LINE L1 -436 5855 5589 9 1550 840 61 7 26 chr5 126553810 126553962 -25983297 - RMER17B LTR ERVK -498 460 312 9 1550 1009 301 94 16 chr5 126553970 126554406 -25982853 - Lx7 LINE L1 -315 5565 5096 9 1550 915 209 5 40 chr5 126554748 126554947 -25982312 - B3A SINE B2 0 198 7 9 1550 420 71 0 0 chr5 126555176 126555232 -25982027 + (A)n Simple_repeat Simple_repeat 1 56 0 9 1550 1830 183 103 3 chr5 126555582 126555961 -25981298 - MTD LTR MaLR -2 417 1 9 1550 221 319 28 0 chr5 126555962 126556034 -25981225 + B3A SINE B2 83 156 -42 9 1550 441 0 0 0 chr5 126556037 126556086 -25981173 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1550 691 142 12 140 chr5 126556265 126556429 -25980830 - B1_Mur1 SINE Alu -5 144 2 1 1550 1584 131 14 32 chr5 126556934 126557218 -25980041 - ORR1A4 LTR MaLR -8 321 43 1 1550 1542 160 45 7 chr5 126557734 126558043 -25979216 - ORR1A4 LTR MaLR -8 321 1 1 1550 275 194 32 11 chr5 126558423 126558517 -25978742 + CT-rich Low_complexity Low_complexity 3 98 0 1 1550 626 259 113 68 chr5 126558545 126558810 -25978449 - B4 SINE B4 -14 278 2 1 1550 243 0 0 0 chr5 126559182 126559209 -25978050 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1550 237 198 185 65 chr5 126559210 126559318 -25977941 - B1_Mur4 SINE Alu -11 139 19 1 1550 209 218 36 0 chr5 126560705 126560760 -25976499 + G-rich Low_complexity Low_complexity 3 59 0 1 1550 1555 64 5 18 chr5 126560993 126561216 -25976043 - LTRIS2 LTR ERV1 0 564 345 1 1550 1228 162 149 18 chr5 126561295 126561571 -25975688 - RMER1B Other Other -4 1062 751 1 1550 183 82 0 93 chr5 126562473 126562527 -25974732 + A-rich Low_complexity Low_complexity 4 52 0 1 1550 305 82 0 0 chr5 126562629 126562690 -25974569 - MT2A LTR ERVL 0 533 473 1 1550 25 0 0 0 chr5 126563010 126563035 -25974224 + AT_rich Low_complexity Low_complexity 1 25 0 1 1550 190 138 30 30 chr5 126563457 126563524 -25973735 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1 1550 1286 202 83 23 chr5 126563535 126563920 -25973339 - MT2A LTR ERVL -48 553 14 1 1550 504 0 0 0 chr5 126564632 126564688 -25972571 + (GTTTG)n Simple_repeat Simple_repeat 2 57 0 1 1550 798 46 0 0 chr5 126564693 126564802 -25972457 - B1_Mus2 SINE Alu 0 147 39 1 1550 297 195 69 58 chr5 126564736 126564823 -25972436 - RLTR25B LTR ERVK -519 509 422 1 1550 303 276 19 75 chr5 126565425 126565531 -25971728 + MTEa LTR MaLR 88 187 -192 1 1550 1314 217 95 12 chr5 126565562 126565889 -25971370 + MTD LTR MaLR 20 373 -46 1 1550 514 233 18 150 chr5 126565897 126566124 -25971135 + MTEa LTR MaLR 174 370 -9 1 1550 4105 47 99 2 chr5 126566187 126566701 -25970558 + LTRIS2 LTR ERV1 1 564 0 1 1550 497 58 14 0 chr5 126567438 126567507 -25969752 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1550 561 296 81 0 chr5 126567676 126567862 -25969397 - MT2A LTR ERVL -87 446 246 1 1550 230 329 0 0 chr5 126567916 126567992 -25969267 + MLT1D LTR MaLR 357 432 -73 1 1550 186 237 17 8 chr5 126569447 126569566 -25967693 + (CA)n Simple_repeat Simple_repeat 2 121 0 1 1550 948 141 11 6 chr5 126569811 126569989 -25967270 + GA-rich Low_complexity Low_complexity 2 180 0 1 1550 303 13 104 13 chr5 126569982 126570059 -25967200 + (GAAA)n Simple_repeat Simple_repeat 4 87 0 1 1550 288 111 0 0 chr5 126570566 126570611 -25966648 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1550 503 259 79 89 chr5 126570648 126570928 -25966331 - B4A SINE B4 -15 277 1 1 1550 182 232 137 29 chr5 126571214 126571316 -25965943 - L2c LINE L2 -211 3176 3064 1 1550 555 80 0 0 chr5 126571395 126571469 -25965790 - RLTR10 LTR ERVK -2 388 315 1 1550 2121 67 26 20 chr5 126571469 126571774 -25965485 + IAPLTR2b LTR ERVK 1 307 -20 1 1550 2142 55 10 0 chr5 126571801 126572092 -25965167 - RLTR10 LTR ERVK -96 294 1 1 1550 283 276 11 11 chr5 126572179 126572267 -25964992 + GA-rich Low_complexity Low_complexity 3 90 0 1 1550 963 237 120 26 chr5 126573515 126573823 -25963436 - ORR1E LTR MaLR 0 359 23 1 1550 640 263 79 0 chr5 126574469 126574621 -25962638 - RSINE1 SINE B4 0 165 2 1 1550 233 192 19 0 chr5 126574793 126574845 -25962414 - MER53 DNA hAT -4 189 137 1 1550 1701 207 60 8 chr5 126574998 126575363 -25961896 + ORR1C2 LTR MaLR 1 384 0 1 1550 264 185 0 0 chr5 126575839 126575893 -25961366 + GA-rich Low_complexity Low_complexity 6 59 0 1 1550 357 358 8 11 chr5 126576012 126576254 -25961005 + GA-rich Low_complexity Low_complexity 1 241 0 1 1550 554 233 22 8 chr5 126577141 126577275 -25959984 + B3 SINE B2 81 216 0 1 1550 424 247 0 11 chr5 126577811 126577901 -25959358 + B1_Mur4 SINE Alu 1 89 -61 1 1550 791 216 27 7 chr5 126577973 126578122 -25959137 + B3 SINE B2 2 153 -63 1 1550 252 122 0 0 chr5 126578429 126578470 -25958789 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1550 540 30 0 0 chr5 126578482 126578548 -25958711 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1550 23 0 0 0 chr5 126579704 126579727 -25957532 + AT_rich Low_complexity Low_complexity 1 23 0 1 1550 1375 62 39 17 chr5 126579737 126579918 -25957341 + B2_Mm2 SINE B2 2 186 -9 1 1550 495 0 0 0 chr5 126579998 126580053 -25957206 + (TCCCC)n Simple_repeat Simple_repeat 3 57 0 1 1550 516 332 74 25 chr5 126581727 126581843 -25955416 - B4A SINE B4 -4 288 160 1 1550 219 36 0 0 chr5 126581843 126581871 -25955388 + (CAGCC)n Simple_repeat Simple_repeat 3 30 0 1 1550 516 332 74 25 chr5 126581871 126581998 -25955261 - B4A SINE B4 -133 159 33 1 1550 1797 212 57 22 chr5 126582167 126582572 -25954687 - MTD LTR MaLR 0 419 1 1 1550 936 155 84 37 chr5 126582818 126582885 -25954374 + URR1A DNA MER1_type 3 76 -150 1 1550 4059 173 85 62 chr5 126582885 126583062 -25954197 + RMER19B LTR ERVK 1 134 -768 1 1550 1442 89 5 0 chr5 126583062 126583252 -25954007 + B2_Mm1a SINE B2 1 191 -2 1 1550 4059 173 85 62 chr5 126583252 126583956 -25953303 + RMER19B LTR ERVK 135 902 0 1 1550 936 155 84 37 chr5 126583956 126584058 -25953201 + URR1A DNA MER1_type 77 186 -40 1 1550 6084 54 124 1 chr5 126584058 126584853 -25952406 + RLTR13B1 LTR ERVK 1 893 0 1 1550 936 155 84 37 chr5 126584853 126584896 -25952363 + URR1A DNA MER1_type 187 225 -1 1 1550 269 297 106 72 chr5 126585451 126585687 -25951572 + MER67C LTR ERV1 86 329 -382 1 1550 2196 131 62 26 chr5 126586080 126586284 -25950975 + RMER10B LTR ERVL 1 203 -195 1 1550 501 58 0 0 chr5 126586284 126586353 -25950906 + (TCC)n Simple_repeat Simple_repeat 1 69 0 1 1550 2196 131 62 26 chr5 126586353 126586532 -25950727 + RMER10B LTR ERVL 204 398 0 1 1550 1058 232 138 35 chr5 126586723 126586896 -25950363 + ORR1C2 LTR MaLR 1 188 -196 1 1550 378 0 0 0 chr5 126586896 126586938 -25950321 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1550 1058 232 138 35 chr5 126586938 126587112 -25950147 + ORR1C2 LTR MaLR 189 384 0 1 1550 3240 99 9 93 chr5 126587348 126587915 -25949344 - MURVY-LTR LTR ERV1 0 519 1 1 1550 656 32 43 0 chr5 126588157 126588250 -25949009 - L1_Mus3 LINE L1 -7 6631 6535 1 1550 229 287 129 0 chr5 126588337 126588438 -25948821 + RMER5 LTR ERV1 421 534 0 1 1550 208 370 0 0 chr5 126589346 126589427 -25947832 + MIRm SINE MIR 47 127 -149 1 1550 2799 102 45 24 chr5 126589572 126589993 -25947266 - RLTR23 LTR ERV1 0 430 1 1 1550 429 231 0 0 chr5 126590085 126590206 -25947053 + (TG)n Simple_repeat Simple_repeat 2 122 0 1 1550 252 184 0 0 chr5 126590195 126590244 -25947015 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 1 1550 214 291 95 19 chr5 126590474 126590579 -25946680 + MIR SINE MIR 104 216 -46 1 1550 650 53 0 21 chr5 126591023 126591119 -25946140 + (CAGAGA)n Simple_repeat Simple_repeat 4 97 0 1 1550 335 211 8 34 chr5 126591459 126591577 -25945682 + CT-rich Low_complexity Low_complexity 1 115 0 1 1550 583 293 6 19 chr5 126591659 126591819 -25945440 - RSINE1 SINE B4 -6 159 2 1 1550 2098 122 242 3 chr5 126592439 126592799 -25944460 - RLTR41 LTR ERV1 0 446 1 1 1550 279 0 0 0 chr5 126593123 126593154 -25944105 + (TGG)n Simple_repeat Simple_repeat 3 33 0 1 1550 350 265 258 0 chr5 126593363 126593495 -25943764 + B3 SINE B2 10 175 -41 1 1550 449 282 83 6 chr5 126593821 126593978 -25943281 - MLT1D LTR MaLR -3 502 334 1 1550 679 290 4 64 chr5 126594154 126594390 -25942869 - B4 SINE B4 -64 228 7 1 1550 2525 128 19 62 chr5 126594428 126594913 -25942346 - RMER16 LTR ERVK 0 533 70 1 1550 312 277 114 57 chr5 126594951 126595193 -25942066 - B4 SINE B4 -18 274 55 1 1550 491 306 25 6 chr5 126595589 126595750 -25941509 - RSINE1 SINE B4 0 165 2 1 1550 2075 101 167 47 chr5 126596014 126596397 -25940862 + RLTR23 LTR ERV1 1 429 -1 1 1550 454 175 0 20 chr5 126596926 126597031 -25940228 - MTC LTR MaLR -50 371 257 1 1550 273 132 19 22 chr5 126597107 126597170 -25940089 - RLTR11A LTR ERVK -18 509 448 1 1550 1255 65 0 6 chr5 126597212 126597382 -25939877 - B2_Mm2 SINE B2 -26 169 1 1 1550 861 202 60 5 chr5 126597382 126597581 -25939678 - RLTR11A LTR ERVK -79 449 240 1 1550 237 197 0 0 chr5 126597584 126597645 -25939614 + (TTG)n Simple_repeat Simple_repeat 2 62 0 1 1550 750 244 111 39 chr5 126597660 126597984 -25939275 - RLTR11A LTR ERVK -256 321 1 1 1550 194 272 136 0 chr5 126598650 126598731 -25938528 - L2c LINE L2 -185 3202 3111 1 1550 764 199 181 72 chr5 126599555 126599831 -25937428 + Lx7 LINE L1 7105 7410 -286 1 1550 405 0 0 0 chr5 126599831 126599876 -25937383 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1550 317 255 116 9 chr5 126599876 126600032 -25937227 + Lx7 LINE L1 7537 7679 -17 1 1550 225 353 0 16 chr5 126600545 126600666 -25936593 + L1M3 LINE L1 5527 5645 -544 1 1550 540 0 0 0 chr5 126601835 126601895 -25935364 + (TCC)n Simple_repeat Simple_repeat 1 60 0 1 1550 200 130 22 0 chr5 126602164 126602210 -25935049 + A-rich Low_complexity Low_complexity 3 49 0 1 1550 266 297 106 19 chr5 126602792 126602953 -25934306 - RLTR42-int LTR ERVK -4126 1396 1222 1 1550 1530 223 36 11 chr5 126604332 126604690 -25932569 + ORR1D2 LTR MaLR 1 367 -3 1 1550 294 325 60 17 chr5 126604930 126605046 -25932213 + ORR1E LTR MaLR 23 143 -216 1 1550 1261 263 73 18 chr5 126605056 126605440 -25931819 - MTD LTR MaLR -13 406 2 1 1550 2598 169 43 2 chr5 126605867 126606358 -25930901 + RLTR24 LTR ERV1 19 529 0 1 1550 426 20 0 0 chr5 126606980 126607031 -25930228 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1550 647 35 12 0 chr5 126607031 126607117 -25930142 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 1 1550 497 343 33 5 chr5 126607417 126607631 -25929628 + RMER15 LTR ERVL 349 568 -7 1 1550 368 306 26 53 chr5 126609213 126609365 -25927894 - MLT1A0 LTR MaLR -1 407 260 1 1550 573 256 127 48 chr5 126609440 126609629 -25927630 + B3 SINE B2 1 204 -12 1 1550 369 0 0 0 chr5 126609629 126609670 -25927589 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1550 388 276 47 2 chr5 126610052 126610163 -25927096 + B3 SINE B2 53 165 -51 2 1550 387 0 0 0 chr5 126610163 126610206 -25927053 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1550 388 279 41 41 chr5 126610206 126610251 -25927008 + B3 SINE B2 166 211 -5 2 1550 411 278 1 55 chr5 126610255 126610397 -25926862 + L1MA4A LINE L1 5780 5929 -374 2 1550 2373 202 47 0 chr5 126610596 126611062 -25926197 - Lx9 LINE L1 -380 7264 6777 2 1550 343 219 0 10 chr5 126611075 126611172 -25926087 + Lx9 LINE L1 7423 7518 -126 2 1550 423 161 102 90 chr5 126611160 126611232 -25926027 + Lx9 LINE L1 7465 7525 -119 2 1550 531 31 0 0 chr5 126611232 126611297 -25925962 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2 1550 423 161 102 90 chr5 126611297 126611401 -25925858 + Lx9 LINE L1 7526 7643 -1 2 1550 422 65 0 16 chr5 126612624 126612687 -25924572 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 1550 633 230 86 0 chr5 126612693 126612832 -25924427 - B3A SINE B2 -47 151 1 2 1550 844 311 39 21 chr5 126612926 126613209 -25924050 - MLT1A0 LTR MaLR -61 304 17 1 1550 202 118 29 0 chr5 126613492 126613526 -25923733 + (CAAAC)n Simple_repeat Simple_repeat 1 35 0 2 1550 434 18 0 18 chr5 126613527 126613583 -25923676 + (TAAAA)n Simple_repeat Simple_repeat 2 56 0 2 1550 198 0 0 0 chr5 126613937 126613959 -25923300 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 2 1550 1051 282 82 14 chr5 126614872 126615239 -25922020 + MTD LTR MaLR 14 405 -14 2 193 832 291 95 0 chr5 126615472 126615768 -25921491 + L1MA4A LINE L1 5561 5884 -419 2 1551 296 369 48 56 chr5 126616052 126616302 -25920957 - B4A SINE B4 0 292 45 2 1551 524 188 107 14 chr5 126617227 126617367 -25919892 - ORR1D2 LTR MaLR 0 370 218 2 1551 1061 252 69 91 chr5 126617489 126617864 -25919395 - MTE2b LTR MaLR 0 379 13 2 1551 356 323 83 77 chr5 126617889 126618201 -25919058 + LTR55 LTR ERV 19 332 -216 2 1551 239 193 34 34 chr5 126619077 126619136 -25918123 - B1F SINE Alu -18 131 73 2 1551 951 125 6 17 chr5 126619140 126619319 -25917940 + (CCCCCT)n Simple_repeat Simple_repeat 1 177 0 2 1551 729 248 62 0 chr5 126619372 126619533 -25917726 + B3A SINE B2 1 171 -27 2 1551 29 70 0 0 chr5 126619559 126619616 -25917643 + AT_rich Low_complexity Low_complexity 1 57 0 2 1551 610 198 8 16 chr5 126619667 126619795 -25917464 - RSINE1 SINE B4 -28 137 11 2 1551 306 50 0 0 chr5 126620843 126620883 -25916376 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1551 235 310 29 148 chr5 126621415 126621760 -25915499 + Arthur1 DNA Tip100 3458 3761 -186 2 1551 419 356 0 11 chr5 126621760 126621950 -25915309 + L1MC LINE L1 5498 5685 -2100 2 1551 275 104 21 0 chr5 126621956 126622004 -25915255 + (TATG)n Simple_repeat Simple_repeat 4 52 0 2 1551 689 283 204 32 chr5 126622092 126622517 -25914742 + MT2A LTR ERVL 36 533 0 2 1551 280 223 147 11 chr5 126622661 126622756 -25914503 + L2a LINE L2 3317 3424 -2 2 1551 1061 272 26 138 chr5 126622946 126623373 -25913886 + MTE2a LTR MaLR 1 379 0 2 1551 390 279 104 179 chr5 126623468 126623870 -25913389 + MTEa LTR MaLR 5 376 -3 2 1551 995 248 19 0 chr5 126624182 126624388 -25912871 + B3 SINE B2 1 210 -6 2 1551 292 328 51 44 chr5 126626094 126626231 -25911028 + Lx8 LINE L1 7194 7331 -142 2 1551 321 131 0 0 chr5 126626235 126626296 -25910963 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1551 803 118 0 7 chr5 126626295 126626431 -25910828 + (GA)n Simple_repeat Simple_repeat 2 136 0 2 1551 186 103 0 0 chr5 126626466 126626495 -25910764 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1551 2908 81 47 0 chr5 126627891 126628273 -25908986 + MTB LTR MaLR 1 400 0 2 1551 824 203 0 0 chr5 126628360 126628508 -25908751 + B1_Mur1 SINE Alu 2 149 0 2 1551 1257 296 47 15 chr5 126628964 126629369 -25907890 - Lx8 LINE L1 -12 7461 7044 2 1551 927 323 2 96 chr5 126629881 126630092 -25907167 - MTEa LTR MaLR -19 360 169 2 1551 602 273 5 49 chr5 126630092 126630296 -25906963 - B3A SINE B2 -1 197 3 2 1551 927 323 2 96 chr5 126630296 126630481 -25906778 - MTEa LTR MaLR -211 168 1 2 1551 818 191 19 33 chr5 126631552 126631754 -25905505 - B3A SINE B2 -5 190 1 2 1551 545 279 80 65 chr5 126631778 126632054 -25905205 - B4 SINE B4 -12 280 1 2 1551 402 317 21 26 chr5 126632244 126632435 -25904824 + MER3 DNA MER1_type 19 208 -1 2 1551 634 233 200 0 chr5 126633125 126633305 -25903954 - B3 SINE B2 0 216 1 2 1551 207 0 0 0 chr5 126633331 126633354 -25903905 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 2 1551 552 42 0 0 chr5 126633366 126633437 -25903822 + (CA)n Simple_repeat Simple_repeat 2 72 0 2 1551 354 320 40 0 chr5 126633568 126633668 -25903591 + PB1D10 SINE Alu 3 106 -11 2 1551 830 230 34 24 chr5 126633682 126633887 -25903372 + B3 SINE B2 5 211 -5 2 1551 797 272 96 33 chr5 126633889 126634284 -25902975 + L1MC1 LINE L1 5902 6321 -12 2 1551 251 314 43 7 chr5 126634880 126635021 -25902238 + L1_Mur3 LINE L1 5719 5864 -16 2 1551 255 235 175 7 chr5 126636465 126636602 -25900657 - Lx9 LINE L1 -42 7602 7443 2 1551 817 240 19 24 chr5 126637203 126637408 -25899851 + B3 SINE B2 7 210 -6 2 1551 944 274 28 18 chr5 126637581 126637867 -25899392 - B4 SINE B4 0 292 4 2 1551 222 91 0 0 chr5 126638700 126638733 -25898526 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 2 1551 1031 169 5 3 chr5 126638805 126639476 -25897783 + (TCCA)n Simple_repeat Simple_repeat 1 672 0 2 1551 214 281 138 16 chr5 126639560 126639683 -25897576 - L2a LINE L2 -61 3365 3228 2 1551 1025 116 7 0 chr5 126639740 126639886 -25897373 + B1_Mus1 SINE Alu 2 148 0 2 1551 245 98 0 24 chr5 126639888 126639930 -25897329 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 2 1551 785 266 86 0 chr5 126640494 126640738 -25896521 - B4A SINE B4 -27 265 1 2 1551 1481 234 11 8 chr5 126642005 126642283 -25894976 + MTEa LTR MaLR 25 302 -77 2 1551 221 0 0 33 chr5 126642283 126642313 -25894946 + (TAA)n Simple_repeat Simple_repeat 3 31 0 2 1551 1481 234 11 8 chr5 126642313 126642388 -25894871 + MTEa LTR MaLR 303 378 -1 2 1551 1584 229 40 16 chr5 126642399 126642776 -25894483 + MTD LTR MaLR 26 411 -8 2 1551 234 337 21 10 chr5 126642837 126642933 -25894326 - Charlie4 DNA MER1_type -1829 132 36 2 1551 1234 257 33 19 chr5 126643055 126643416 -25893843 + Lx8 LINE L1 7106 7471 -2 2 1551 621 0 0 0 chr5 126643502 126643571 -25893688 + (TCTA)n Simple_repeat Simple_repeat 3 71 0 2 1551 612 291 5 58 chr5 126643575 126643783 -25893476 - ID_B1 SINE B4 -16 208 12 2 1551 804 98 0 0 chr5 126644410 126644543 -25892716 + (TC)n Simple_repeat Simple_repeat 2 134 0 2 1551 290 315 11 11 chr5 126644596 126644686 -25892573 - RSINE1 SINE B4 -27 138 49 2 1551 1286 113 5 21 chr5 126645216 126645406 -25891853 - B2_Mm2 SINE B2 -7 188 2 2 1551 746 238 98 0 chr5 126645434 126645598 -25891661 + B3A SINE B2 1 180 -18 2 1551 227 133 0 22 chr5 126645599 126645645 -25891614 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1551 794 225 110 0 chr5 126645656 126645847 -25891412 + B3 SINE B2 2 213 -3 2 1551 41576 14 2 7 chr5 126646048 126652461 -25884798 - L1Md_A LINE L1 0 6582 202 2 1551 458 241 103 70 chr5 126653086 126653242 -25884017 - RSINE1 SINE B4 -2 163 3 2 1551 392 242 0 57 chr5 126653304 126653409 -25883850 + PB1D10 SINE Alu 8 106 -11 2 1551 224 290 16 0 chr5 126653449 126653511 -25883748 + GA-rich Low_complexity Low_complexity 2 64 0 2 1551 2004 197 19 38 chr5 126653881 126654308 -25882951 + MTD LTR MaLR 1 419 0 2 1551 1156 248 97 43 chr5 126654911 126655261 -25881998 + ORR1D2 LTR MaLR 2 370 0 2 1551 194 267 0 0 chr5 126655812 126655857 -25881402 - MIR SINE MIR -122 140 96 2 1551 1512 234 30 24 chr5 126656026 126656398 -25880861 + MTEa LTR MaLR 6 379 0 2 1551 730 300 127 0 chr5 126657147 126657414 -25879845 - RMER15 LTR ERVL 0 575 275 2 1551 561 168 24 40 chr5 126657447 126657571 -25879688 - RMER15 LTR ERVL -444 131 10 2 1551 186 363 19 10 chr5 126657620 126657723 -25879536 + L2 LINE L2 2616 2719 -700 2 1551 1864 226 66 8 chr5 126657877 126658273 -25878986 - MTD LTR MaLR 0 419 1 2 1551 883 246 73 94 chr5 126658978 126659319 -25877940 - MTEa LTR MaLR -33 346 13 2 1551 450 257 119 57 chr5 126659327 126659442 -25877817 + B4A SINE B4 12 120 -172 2 1551 474 83 0 0 chr5 126659442 126659514 -25877745 + (TG)n Simple_repeat Simple_repeat 2 73 0 2 1551 450 257 119 57 chr5 126659514 126659592 -25877667 + B4A SINE B4 121 216 -76 2 1551 1006 290 4 0 chr5 126660005 126660260 -25876999 + Lx8 LINE L1 6979 7234 -239 2 1551 226 271 0 18 chr5 126661019 126661128 -25876131 + CT-rich Low_complexity Low_complexity 5 111 0 2 1551 834 11 0 0 chr5 126661155 126661250 -25876009 + (TCCC)n Simple_repeat Simple_repeat 2 96 0 2 1551 621 195 0 0 chr5 126661258 126661376 -25875883 - B3 SINE B2 -98 118 1 2 1551 521 261 21 14 chr5 126661407 126661547 -25875712 - B1F1 SINE Alu -8 141 1 2 1551 252 218 71 71 chr5 126661806 126661890 -25875369 - RMER3D-int LTR ERVK -1731 1111 1028 2 1551 3215 63 0 2 chr5 126662410 126662805 -25874454 - MTA_Mm LTR MaLR -2 394 1 2 1551 7689 81 9 69 chr5 126662805 126663974 -25873285 - MTA_Mm-int LTR MaLR 0 1098 1 2 1551 3301 51 0 5 chr5 126663974 126664372 -25872887 - MTA_Mm LTR MaLR 0 396 1 2 1551 627 248 41 0 chr5 126664684 126664829 -25872430 + B3A SINE B2 1 151 -47 2 1551 206 116 23 0 chr5 126664835 126664878 -25872381 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1551 251 85 21 0 chr5 126665363 126665410 -25871849 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 2 1551 341 285 95 0 chr5 126666982 126667112 -25870147 - B3A SINE B2 -56 160 1 2 1551 254 277 112 41 chr5 126667356 126667454 -25869805 + PB1D10 SINE Alu 1 105 -12 2 1551 270 0 0 0 chr5 126667454 126667484 -25869775 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 2 1551 579 267 20 0 chr5 126667613 126667759 -25869500 + Lx8 LINE L1 7034 7182 -291 3 1551 892 251 97 15 chr5 126667877 126668136 -25869123 + Lx8 LINE L1 7173 7452 -21 3 1551 545 280 89 113 chr5 126668510 126668701 -25868558 - B4 SINE B4 -17 275 87 3 1551 1094 204 10 5 chr5 126668701 126668908 -25868351 - B3 SINE B2 -8 208 1 3 1551 545 280 89 113 chr5 126668908 126668998 -25868261 - B4 SINE B4 -206 86 1 3 1551 226 330 0 20 chr5 126670217 126670316 -25866943 + B4A SINE B4 194 290 -2 3 1551 211 273 29 43 chr5 126670477 126670546 -25866713 - B1_Mus2 SINE Alu -60 87 20 3 1551 314 338 78 0 chr5 126670484 126670638 -25866621 - B4A SINE B4 -125 167 2 3 1551 292 231 89 179 chr5 126671858 126671946 -25865313 + RSINE1 SINE B4 3 86 -79 3 1551 694 248 34 19 chr5 126671946 126672152 -25865107 + B3 SINE B2 3 211 -5 3 1551 292 231 89 179 chr5 126672152 126672174 -25865085 + RSINE1 SINE B4 87 108 -57 3 1551 951 106 91 29 chr5 126672174 126672349 -25864910 + B2_Mm2 SINE B2 2 187 -8 3 1551 292 231 89 179 chr5 126672349 126672416 -25864843 + RSINE1 SINE B4 109 165 0 3 1551 546 217 21 17 chr5 126672416 126672716 -25864543 + (CATA)n Simple_repeat Simple_repeat 1 301 0 3 1551 695 215 0 28 chr5 126672757 126672939 -25864320 + (CATA)n Simple_repeat Simple_repeat 2 178 0 3 1551 202 194 0 0 chr5 126672939 126672975 -25864284 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1551 1394 209 105 35 chr5 126673048 126673420 -25863839 + MTD LTR MaLR 19 416 -3 3 1551 573 15 0 0 chr5 126674184 126674250 -25863009 + (TTTC)n Simple_repeat Simple_repeat 3 68 0 3 1551 1004 24 60 0 chr5 126674492 126674660 -25862599 + (GA)n Simple_repeat Simple_repeat 1 178 0 3 1551 360 325 24 0 chr5 126675392 126675515 -25861744 - Tigger7 DNA MER2_type 0 2491 2366 3 1551 293 359 0 25 chr5 126675516 126675636 -25861623 - Tigger7 DNA MER2_type -2081 410 294 3 1551 354 331 21 99 chr5 126675699 126675840 -25861419 + B4A SINE B4 27 156 -136 3 1551 638 269 55 42 chr5 126676514 126676731 -25860528 - ID_B1 SINE B4 -3 221 2 3 1551 406 319 112 62 chr5 126676762 126676986 -25860273 - B4 SINE B4 -18 274 40 3 1551 1006 204 29 14 chr5 126677104 126677313 -25859946 - B3 SINE B2 -2 214 3 3 1551 399 113 0 0 chr5 126678098 126678160 -25859099 + (TATG)n Simple_repeat Simple_repeat 2 63 0 3 1551 830 110 12 18 chr5 126678173 126678339 -25858920 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 3 1551 576 184 0 0 chr5 126678701 126678804 -25858455 + B3 SINE B2 1 103 -113 3 1551 249 33 0 0 chr5 126679221 126679251 -25858008 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1551 459 319 6 58 chr5 126679478 126679651 -25857608 + RSINE1 SINE B4 2 165 0 3 1551 374 216 96 78 chr5 126679996 126680149 -25857110 + MTD LTR MaLR 232 419 0 3 1551 1842 194 12 130 chr5 126680727 126681226 -25856033 + MT2A LTR ERVL 3 442 -91 3 1551 342 0 0 0 chr5 126681226 126681264 -25855995 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1551 561 68 0 0 chr5 126681746 126681820 -25855439 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 1551 611 292 71 31 chr5 126681905 126682160 -25855099 + LTR41 LTR ERVL 1 265 -503 3 1551 389 314 100 56 chr5 126682885 126682957 -25854302 - B4A SINE B4 -4 288 215 3 1551 458 17 17 0 chr5 126682957 126683016 -25854243 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1551 389 314 100 56 chr5 126683016 126683213 -25854046 - B4A SINE B4 -78 214 7 3 1551 273 285 6 34 chr5 126684005 126684232 -25853027 + (TCTCTG)n Simple_repeat Simple_repeat 1 220 0 3 1551 600 97 0 0 chr5 126685210 126685303 -25851956 + (TG)n Simple_repeat Simple_repeat 2 94 0 3 1551 304 233 74 179 chr5 126685304 126685466 -25851793 - B3 SINE B2 -13 203 59 3 1551 234 198 187 9 chr5 126686687 126686794 -25850465 - MER113 DNA MER1_type -48 473 348 3 1551 541 265 58 14 chr5 126687198 126687336 -25849923 + B1F SINE Alu 1 144 -5 3 1551 423 0 0 0 chr5 126687344 126687391 -25849868 + (TAA)n Simple_repeat Simple_repeat 1 47 0 3 1551 261 336 8 23 chr5 126687595 126687723 -25849536 + MIR SINE MIR 78 203 -59 3 1551 519 17 0 0 chr5 126689939 126689999 -25847260 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1551 208 314 58 19 chr5 126690108 126690212 -25847047 + (CATG)n Simple_repeat Simple_repeat 2 109 0 3 1551 1200 35 0 0 chr5 126690769 126690914 -25846345 + (TC)n Simple_repeat Simple_repeat 2 146 0 3 1551 213 39 0 0 chr5 126690914 126690939 -25846320 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1551 2004 155 101 43 chr5 126691468 126691866 -25845393 - MTC LTR MaLR 0 421 1 3 1551 1473 187 87 19 chr5 126691964 126692231 -25845028 + MTD LTR MaLR 1 287 -132 3 1551 1315 178 179 49 chr5 126692231 126692556 -25844703 - ORR1B2 LTR MaLR 0 367 1 3 1551 1473 187 87 19 chr5 126692556 126692658 -25844601 + MTD LTR MaLR 288 395 -24 3 1551 268 24 24 24 chr5 126693089 126693131 -25844128 + (TTA)n Simple_repeat Simple_repeat 1 42 0 3 1551 967 165 99 16 chr5 126693165 126693356 -25843903 - B3 SINE B2 -5 211 5 3 1551 1219 48 0 7 chr5 126693445 126693593 -25843666 - B1_Mus1 SINE Alu 0 148 2 3 1551 1156 306 78 31 chr5 126693845 126694330 -25842929 + Lx8 LINE L1 6955 7462 -11 3 1551 990 134 0 0 chr5 126694330 126694494 -25842765 + (GAA)n Simple_repeat Simple_repeat 2 165 0 3 1551 513 0 0 0 chr5 126695241 126695298 -25841961 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 1551 264 91 0 0 chr5 126695298 126695342 -25841917 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1551 744 94 0 0 chr5 126696163 126696269 -25840990 + (TTCC)n Simple_repeat Simple_repeat 1 106 0 3 1551 263 67 44 0 chr5 126696275 126696320 -25840939 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 3 1551 660 215 8 30 chr5 126696325 126696459 -25840800 - B1_Mur1 SINE Alu -16 133 3 3 1551 373 305 26 7 chr5 126696622 126696774 -25840485 - RMER15 LTR ERVL -65 510 356 3 1551 661 98 9 9 chr5 126696982 126697095 -25840164 + (TCTA)n Simple_repeat Simple_repeat 3 115 0 3 1551 572 297 91 27 chr5 126698104 126698416 -25838843 - MTE2a LTR MaLR -43 376 47 3 1551 771 105 46 17 chr5 126698418 126698592 -25838667 + C-rich Low_complexity Low_complexity 1 179 0 3 1551 483 130 0 0 chr5 126698576 126698653 -25838606 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 3 1551 1772 210 40 10 chr5 126698653 126699160 -25838099 - Lx4B LINE L1 0 7058 6490 3 1551 1037 220 104 36 chr5 126699160 126699467 -25837792 + MTD LTR MaLR 84 411 -8 3 1551 368 275 9 56 chr5 126699463 126699571 -25837688 - MTE2a LTR MaLR -220 159 57 3 1551 654 248 22 0 chr5 126699565 126699702 -25837557 - B3A SINE B2 -56 142 3 3 1551 233 225 95 55 chr5 126699744 126699839 -25837420 - B1_Mur4 SINE Alu -1 119 22 3 1551 1128 82 0 14 chr5 126699840 126699988 -25837271 + B1_Mus1 SINE Alu 3 148 0 3 1551 252 290 0 0 chr5 126701433 126701495 -25835764 + (CACCAT)n Simple_repeat Simple_repeat 3 64 0 3 1551 650 221 0 24 chr5 126701507 126701674 -25835585 + HAL1-2a_MD LINE L1 2345 2507 -517 3 1551 414 0 0 0 chr5 126701912 126701958 -25835301 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1551 464 45 15 0 chr5 126702070 126702137 -25835122 + (TG)n Simple_repeat Simple_repeat 2 69 0 3 1551 398 234 61 30 chr5 126702468 126702600 -25834659 - L1MA4 LINE L1 -383 5917 5782 3 1551 221 100 50 0 chr5 126702602 126702642 -25834617 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 3 1551 255 299 0 0 chr5 126702953 126703020 -25834239 + (TATG)n Simple_repeat Simple_repeat 2 68 0 3 1551 960 204 102 5 chr5 126703061 126703258 -25834001 - B3 SINE B2 0 216 1 3 1551 360 279 62 116 chr5 126703263 126703342 -25833917 - B4A SINE B4 -63 229 143 3 1551 249 57 0 0 chr5 126703342 126703377 -25833882 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1551 534 31 0 0 chr5 126703378 126703442 -25833817 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 1551 1170 70 0 0 chr5 126703442 126703584 -25833675 - B1_Mus1 SINE Alu -6 142 1 3 1551 360 279 62 116 chr5 126703584 126703647 -25833612 - B4A SINE B4 -150 142 93 3 1551 1274 252 82 6 chr5 126704961 126705333 -25831926 - MTD LTR MaLR -20 399 20 3 1551 980 252 77 31 chr5 126706067 126706456 -25830803 + RMER5 LTR ERV1 128 534 0 3 1551 488 292 41 23 chr5 126707027 126707199 -25830060 - B3A SINE B2 0 216 42 3 1551 1521 263 135 43 chr5 126707566 126708190 -25829069 - Lx8 LINE L1 0 7473 6793 3 1551 299 313 43 29 chr5 126708464 126708602 -25828657 - MER113 DNA MER1_type -273 248 109 3 1551 249 255 0 0 chr5 126708849 126708947 -25828312 + (CA)n Simple_repeat Simple_repeat 2 99 0 3 1551 246 234 0 46 chr5 126708962 126709092 -25828167 + (CATATA)n Simple_repeat Simple_repeat 6 129 0 3 1551 408 339 6 11 chr5 126709325 126709504 -25827755 + (CATA)n Simple_repeat Simple_repeat 1 178 0 3 1551 935 183 156 0 chr5 126709566 126709746 -25827513 - B3 SINE B2 -6 210 3 3 1551 24 32 0 0 chr5 126710203 126710234 -25827025 + AT_rich Low_complexity Low_complexity 1 31 0 3 1551 207 0 0 0 chr5 126710421 126710444 -25826815 + (TCTCTG)n Simple_repeat Simple_repeat 4 26 0 3 1551 565 196 0 36 chr5 126710488 126710599 -25826660 - B1_Mur2 SINE Alu -26 123 17 3 1551 262 258 146 0 chr5 126710609 126710698 -25826561 - PB1D7 SINE Alu 0 120 19 3 1551 446 75 0 15 chr5 126710843 126710911 -25826348 + (TG)n Simple_repeat Simple_repeat 2 68 0 3 1551 385 182 184 39 chr5 126710927 126711030 -25826229 - B3A SINE B2 -72 126 9 3 1551 953 266 88 32 chr5 126711137 126711568 -25825691 - L1MA6 LINE L1 -195 6105 5651 3 1551 835 305 59 39 chr5 126711691 126712131 -25825128 - Lx8 LINE L1 -59 7414 6966 3 1551 742 227 56 17 chr5 126712370 126712549 -25824710 + B3A SINE B2 7 192 -6 3 1551 1056 269 35 28 chr5 126713555 126713845 -25823414 - B4A SINE B4 0 292 1 3 1551 555 56 0 0 chr5 126714768 126714839 -25822420 + (TG)n Simple_repeat Simple_repeat 1 71 0 3 1551 614 314 5 26 chr5 126715096 126715286 -25821973 - B4 SINE B4 -22 270 85 3 1551 501 231 43 0 chr5 126715293 126715410 -25821849 - B3 SINE B2 -7 209 88 3 1551 243 258 88 22 chr5 126715445 126715536 -25821723 - B4A SINE B4 -195 97 1 3 1551 375 78 0 0 chr5 126716461 126716512 -25820747 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1551 465 282 34 0 chr5 126716512 126716629 -25820630 - RSINE1 SINE B4 -40 125 5 4 1551 374 322 66 88 chr5 126716841 126717069 -25820190 - B4A SINE B4 -45 247 25 4 1551 3824 64 19 0 chr5 126717073 126717539 -25819720 - MT2C_Mm LTR ERVL 0 475 1 4 1551 668 288 22 67 chr5 126717635 126717993 -25819266 - RLTR15 LTR ERVK -17 342 1 4 1551 189 0 0 0 chr5 126718116 126718137 -25819122 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 4 1551 1269 47 5 9 chr5 126719216 126719376 -25817883 + L1_Mm LINE L1 5442 5615 -685 4 1551 8146 50 1 2 chr5 126719376 126720373 -25816886 + L1Md_T LINE L1 5587 6582 0 4 1551 638 235 48 92 chr5 126720373 126720484 -25816775 + L1_Mm LINE L1 5616 5722 -578 4 1551 776 225 30 45 chr5 126720494 126720694 -25816565 + B3A SINE B2 2 198 0 4 1551 239 282 86 31 chr5 126720837 126720965 -25816294 - MER113 DNA MER1_type -278 243 109 4 1551 1004 203 20 0 chr5 126721268 126721470 -25815789 + B3 SINE B2 1 206 -10 4 1551 357 341 110 48 chr5 126721481 126721627 -25815632 + MLT1F2 LTR MaLR 83 241 -319 4 1551 3072 28 3 64 chr5 126721627 126722016 -25815243 - RLTR10B2 LTR ERVK 0 365 1 4 1551 357 341 110 48 chr5 126722016 126722097 -25815162 + MLT1F2 LTR MaLR 242 324 -236 4 1551 230 183 33 0 chr5 126722969 126723029 -25814230 + (CATA)n Simple_repeat Simple_repeat 2 63 0 4 1551 1976 212 101 2 chr5 126724893 126725370 -25811889 + MT2A LTR ERVL 1 524 -9 4 1551 195 283 0 0 chr5 126726233 126726286 -25810973 + MIR SINE MIR 3 55 -207 4 1551 1351 147 0 30 chr5 126726726 126726958 -25810301 + URR1A DNA MER1_type 2 226 0 4 1551 284 111 0 18 chr5 126727521 126727576 -25809683 + (GAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1551 320 43 22 0 chr5 126727623 126727669 -25809590 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 4 1551 273 328 0 69 chr5 126729269 126729400 -25807859 - B4A SINE B4 0 292 171 4 1551 309 224 103 23 chr5 126729441 126729528 -25807731 - B4A SINE B4 -198 94 1 4 1551 1002 191 82 0 chr5 126730368 126730562 -25806697 + B3 SINE B2 1 210 -6 4 1551 430 281 76 141 chr5 126730674 126731056 -25806203 + MTEa LTR MaLR 2 358 -21 4 1551 808 283 43 68 chr5 126731625 126731993 -25805266 - ORR1E LTR MaLR 0 359 1 4 1551 919 256 48 45 chr5 126732080 126732370 -25804889 - B4 SINE B4 0 292 2 4 1551 301 316 130 14 chr5 126732584 126732722 -25804537 - MLT1J2 LTR MaLR -129 319 166 4 1551 1034 223 5 5 chr5 126733695 126733907 -25803352 - B3 SINE B2 -4 212 1 4 1551 355 185 8 25 chr5 126734002 126734124 -25803135 + (CA)n Simple_repeat Simple_repeat 1 120 0 4 1551 833 195 0 4 chr5 126734175 126734449 -25802810 + (CA)n Simple_repeat Simple_repeat 1 272 0 4 1551 453 76 0 0 chr5 126734461 126734527 -25802732 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1551 708 295 20 51 chr5 126735346 126735642 -25801617 - B4A SINE B4 -2 290 4 4 1551 1952 208 62 9 chr5 126735643 126736171 -25801088 - RCHARR1 DNA MER1_type -35 939 384 4 1551 21 36 0 0 chr5 126736588 126736616 -25800643 + AT_rich Low_complexity Low_complexity 1 28 0 4 1551 261 0 0 0 chr5 126737165 126737194 -25800065 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1551 1478 182 142 8 chr5 126737268 126737633 -25799626 - MTD LTR MaLR 0 419 6 4 1551 190 254 102 0 chr5 126737820 126737879 -25799380 - MIRm SINE MIR -195 81 17 4 1551 320 326 0 0 chr5 126739103 126739195 -25798064 + RSINE1 SINE B4 2 93 -72 4 1551 717 239 18 46 chr5 126739259 126739478 -25797781 + B3 SINE B2 1 213 -3 4 1551 592 306 8 117 chr5 126740090 126740338 -25796921 + B4A SINE B4 54 274 -18 4 1551 369 0 0 0 chr5 126740449 126740490 -25796769 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1551 372 22 0 0 chr5 126740490 126740534 -25796725 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1551 735 221 6 77 chr5 126740540 126740721 -25796538 - Lx8 LINE L1 -192 7281 7114 4 1551 784 281 31 18 chr5 126740904 126741129 -25796130 - Lx8 LINE L1 -409 7064 6837 4 1551 585 0 0 0 chr5 126741876 126741941 -25795318 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 1551 350 230 110 42 chr5 126741990 126742108 -25795151 + B2_Mm2 SINE B2 1 126 -69 4 1551 270 218 0 0 chr5 126742180 126742252 -25795007 + L1M LINE L1 5319 5390 -793 4 1551 313 357 0 7 chr5 126742738 126742879 -25794380 + (TATG)n Simple_repeat Simple_repeat 3 142 0 4 1551 800 263 56 42 chr5 126743669 126743955 -25793304 + B4A SINE B4 3 292 0 4 1551 206 259 28 0 chr5 126743967 126744110 -25793149 + (CATA)n Simple_repeat Simple_repeat 4 150 0 4 1551 1193 62 0 0 chr5 126744459 126744620 -25792639 + B2_Mm2 SINE B2 1 161 -34 4 1551 360 0 0 0 chr5 126744621 126744661 -25792598 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4 1551 184 149 0 41 chr5 126745949 126745998 -25791261 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 4 1551 529 237 137 55 chr5 126746295 126746450 -25790809 + B3A SINE B2 1 171 -27 4 1551 396 0 0 0 chr5 126746450 126746494 -25790765 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1551 529 237 137 55 chr5 126746494 126746521 -25790738 + B3A SINE B2 172 198 0 4 193 441 0 0 0 chr5 126746600 126746649 -25790610 + (GA)n Simple_repeat Simple_repeat 1 49 0 4 1552 746 279 14 0 chr5 126747330 126747545 -25789714 - ID_B1 SINE B4 -3 221 4 4 1552 1480 222 96 37 chr5 126747809 126748268 -25788991 + RLTR11A2 LTR ERVK 11 496 -31 4 1552 750 239 47 32 chr5 126748436 126748626 -25788633 + B3A SINE B2 6 198 0 4 1552 28 0 0 0 chr5 126748626 126748654 -25788605 + AT_rich Low_complexity Low_complexity 1 28 0 4 1552 2343 151 5 3 chr5 126748656 126749035 -25788224 - RLTR14 LTR ERV1 0 382 3 4 1552 1114 153 12 93 chr5 126749311 126749331 -25787928 - Lx LINE L1 0 6654 6632 4 1552 4364 55 61 41 chr5 126749331 126749936 -25787323 - L1Md_F2 LINE L1 0 6582 5966 4 1552 1114 153 12 93 chr5 126749936 126750174 -25787085 - Lx LINE L1 -23 6631 6417 4 1552 668 322 24 61 chr5 126750344 126750641 -25786618 - B4 SINE B4 -4 288 3 4 1552 1042 230 14 0 chr5 126751303 126751516 -25785743 + B3 SINE B2 1 216 0 4 1552 349 266 0 52 chr5 126752285 126752400 -25784859 - ORR1E LTR MaLR 0 379 271 4 1552 634 163 14 17 chr5 126752519 126752874 -25784385 + (TAGA)n Simple_repeat Simple_repeat 1 354 0 4 1552 462 324 22 22 chr5 126752947 126753127 -25784132 - ORR1E LTR MaLR -177 182 3 4 1552 189 0 0 0 chr5 126753642 126753663 -25783596 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1552 198 0 0 0 chr5 126755108 126755130 -25782129 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 4 1552 446 261 20 55 chr5 126755327 126755473 -25781786 - B1_Mur1 SINE Alu -7 142 2 4 1552 260 240 23 200 chr5 126755473 126755517 -25781742 - MT2B LTR ERVL -448 153 133 4 1552 1041 256 86 65 chr5 126755543 126755986 -25781273 + Lx8 LINE L1 7020 7471 -2 4 1552 228 316 95 63 chr5 126756283 126756472 -25780787 + MER102a DNA MER1_type 123 317 -13 4 1552 221 117 67 0 chr5 126756509 126756569 -25780690 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1552 555 295 75 49 chr5 126756610 126756877 -25780382 - B4A SINE B4 -12 280 7 4 1552 238 353 51 37 chr5 126756937 126757152 -25780107 - MT2A LTR ERVL -70 463 246 4 1552 228 67 0 0 chr5 126758310 126758340 -25778919 + (CAG)n Simple_repeat Simple_repeat 3 32 0 4 1552 520 229 0 0 chr5 126758366 126758471 -25778788 - PB1D9 SINE Alu -14 106 2 4 1552 207 186 0 0 chr5 126758870 126758913 -25778346 + (CAAA)n Simple_repeat Simple_repeat 3 45 0 4 1552 656 260 128 28 chr5 126759313 126759562 -25777697 - Lx8 LINE L1 -295 7178 6905 4 1552 260 255 126 98 chr5 126759563 126759737 -25777522 + Lx8 LINE L1 7293 7471 -2 4 1552 384 22 0 0 chr5 126760122 126760167 -25777092 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1552 531 0 0 0 chr5 126760167 126760225 -25777034 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1552 675 246 70 22 chr5 126760270 126760540 -25776719 + Charlie1a DNA MER1_type 1144 1426 -29 4 1552 203 172 50 33 chr5 126760576 126760636 -25776623 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 4 1552 650 231 21 42 chr5 126760713 126760903 -25776356 + MTEa LTR MaLR 14 199 -180 4 1552 863 156 258 0 chr5 126760925 126761092 -25776167 - B3 SINE B2 -5 211 2 4 1552 183 42 0 0 chr5 126762046 126762070 -25775189 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4 1552 697 73 40 16 chr5 126762883 126763009 -25774250 + (GAAAA)n Simple_repeat Simple_repeat 2 130 0 4 1552 319 267 18 62 chr5 126763023 126763135 -25774124 + PB1D10 SINE Alu 4 110 -7 4 1552 534 265 96 0 chr5 126763148 126763284 -25773975 + B1_Mur1 SINE Alu 1 149 0 4 1552 225 349 0 0 chr5 126763296 126763362 -25773897 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 4 1552 192 125 0 0 chr5 126763362 126763394 -25773865 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 4 1552 848 213 90 25 chr5 126764646 126764968 -25772291 + RLTR15 LTR ERVK 1 343 -16 4 1552 439 277 95 19 chr5 126765140 126765350 -25771909 + ORR1E LTR MaLR 11 236 -123 4 1552 246 284 77 33 chr5 126765366 126765457 -25771802 + ORR1E LTR MaLR 238 332 -47 4 1552 280 306 110 45 chr5 126765733 126765887 -25771372 - B4A SINE B4 -124 168 5 4 1552 1039 254 20 8 chr5 126765921 126766171 -25771088 + MTE2b LTR MaLR 125 377 -2 4 1552 223 372 15 23 chr5 126766798 126766930 -25770329 - MIR SINE MIR -10 252 122 4 1552 1064 139 99 5 chr5 126766965 126767167 -25770092 + URR1A DNA MER1_type 6 226 0 4 1552 4263 204 70 128 chr5 126767880 126769456 -25767803 - RLTR21 LTR ERVK -106 1466 18 4 1552 207 167 0 0 chr5 126769456 126769498 -25767761 + CT-rich Low_complexity Low_complexity 1 42 0 4 1552 432 0 0 0 chr5 126769708 126769756 -25767503 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1552 542 292 48 0 chr5 126769761 126769908 -25767351 - B3A SINE B2 -20 178 25 4 1552 777 301 5 5 chr5 126770120 126770330 -25766929 - ID_B1 SINE B4 -11 213 4 4 1552 550 338 20 31 chr5 126770734 126771027 -25766232 + MT2A LTR ERVL 132 421 -112 4 1552 182 250 14 0 chr5 126771151 126771223 -25766036 + (CA)n Simple_repeat Simple_repeat 2 74 0 5 1552 256 216 0 0 chr5 126771225 126771276 -25765983 + MLT2B3 LTR ERVL 504 554 0 5 1552 441 198 0 0 chr5 126771626 126771722 -25765537 + (TA)n Simple_repeat Simple_repeat 1 96 0 5 1552 741 95 0 0 chr5 126771818 126771934 -25765325 + (TA)n Simple_repeat Simple_repeat 2 117 0 5 1552 1714 124 143 12 chr5 126771934 126772276 -25764983 + ORR1B1 LTR MaLR 8 394 0 5 1552 216 0 0 0 chr5 126772277 126772301 -25764958 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1552 477 0 0 0 chr5 126772301 126772354 -25764905 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 5 1552 251 230 11 0 chr5 126772702 126772789 -25764470 + (ATGGTG)n Simple_repeat Simple_repeat 6 93 0 5 1552 481 150 0 20 chr5 126773292 126773394 -25763865 + CT-rich Low_complexity Low_complexity 3 102 0 5 1552 330 260 34 34 chr5 126774125 126774300 -25762959 + (TATG)n Simple_repeat Simple_repeat 4 178 0 5 1552 696 313 7 92 chr5 126774323 126774629 -25762630 - B4A SINE B4 -10 282 3 5 1552 919 255 0 28 chr5 126775021 126775239 -25762020 - B3 SINE B2 0 216 5 5 1552 326 147 55 68 chr5 126775412 126775485 -25761774 - RLTR31A_Mm LTR ERVK -219 365 294 5 1552 7610 63 19 7 chr5 126775499 126776467 -25760792 - L1_Mus1 LINE L1 -1 6566 5588 5 1552 2047 84 16 3 chr5 126776468 126776779 -25760480 - RLTR31A_Mm LTR ERVK -269 315 1 5 1552 220 27 54 0 chr5 126778661 126778698 -25758561 + (CAAAAA)n Simple_repeat Simple_repeat 5 43 0 5 1552 766 292 98 8 chr5 126778981 126779226 -25758033 + B4A SINE B4 3 269 -23 5 1552 296 48 24 0 chr5 126779261 126779303 -25757956 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1552 459 0 0 0 chr5 126780025 126780076 -25757183 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 5 1552 258 160 0 0 chr5 126780105 126780155 -25757104 + (CAAG)n Simple_repeat Simple_repeat 1 50 0 5 1552 676 206 7 0 chr5 126780591 126780727 -25756532 - B1_Mur1 SINE Alu 0 149 13 5 1552 734 262 48 24 chr5 126780749 126780956 -25756303 - B4A SINE B4 -70 222 11 5 1552 727 272 43 19 chr5 126780982 126781192 -25756067 - B3 SINE B2 0 216 2 5 1552 430 246 122 34 chr5 126781602 126781749 -25755510 - RMER15 LTR ERVL -415 160 1 5 1552 903 246 35 0 chr5 126782033 126782232 -25755027 + B3 SINE B2 1 206 -10 5 1552 586 294 64 10 chr5 126784388 126784591 -25752668 + RMER15 LTR ERVL 360 573 -2 5 1552 562 306 92 44 chr5 126784626 126784920 -25752339 - MER82 DNA MER2_type -210 443 136 5 1552 325 277 105 18 chr5 126784948 126785062 -25752197 + ID_B1 SINE B4 8 131 -93 5 1552 405 164 0 14 chr5 126786215 126786289 -25750970 - ORR1E LTR MaLR -13 366 294 5 1552 1370 169 130 28 chr5 126786289 126786611 -25750648 - MTC LTR MaLR 0 421 67 5 1552 23 33 0 0 chr5 126786613 126786643 -25750616 + AT_rich Low_complexity Low_complexity 1 30 0 5 1552 13705 92 35 24 chr5 126787216 126790046 -25747213 - L1VL2 LINE L1 -626 2989 123 5 1552 351 214 63 90 chr5 126790160 126790276 -25746983 + B3 SINE B2 27 136 -80 5 1552 330 26 0 0 chr5 126790276 126790315 -25746944 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1552 242 241 104 135 chr5 126790315 126790361 -25746898 + B2_Mm2 SINE B2 132 183 -12 5 1552 656 199 7 7 chr5 126790365 126790502 -25746757 - ORR1E LTR MaLR -205 154 18 5 1552 774 293 19 4 chr5 126790621 126790885 -25746374 - L1MC1 LINE L1 -244 6089 5822 5 1552 833 242 42 5 chr5 126791159 126791350 -25745909 - B3 SINE B2 -6 210 13 5 1552 368 288 3 0 chr5 126791599 126791706 -25745553 - MTE2b LTR MaLR -16 363 256 5 1552 1373 212 117 0 chr5 126791724 126792050 -25745209 + MTD LTR MaLR 1 364 -55 5 1552 322 321 45 22 chr5 126792097 126792231 -25745028 - MTE2b LTR MaLR -217 142 6 5 1552 803 257 115 55 chr5 126792234 126792611 -25744648 + MTE2a LTR MaLR 6 417 -2 5 1552 503 112 11 0 chr5 126794176 126794265 -25742994 + (TG)n Simple_repeat Simple_repeat 1 90 0 5 1552 434 226 50 34 chr5 126794399 126794518 -25742741 - B4A SINE B4 -165 127 7 5 1552 522 43 0 0 chr5 126794719 126794788 -25742471 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 1552 212 237 0 0 chr5 126794813 126794851 -25742408 - B4A SINE B4 -210 82 45 5 1552 579 40 0 0 chr5 126794864 126794938 -25742321 + (CA)n Simple_repeat Simple_repeat 2 75 0 5 1552 221 188 42 0 chr5 126795507 126795555 -25741704 + CT-rich Low_complexity Low_complexity 5 54 0 5 1552 679 265 51 45 chr5 126795555 126795903 -25741356 - L1MA4 LINE L1 -278 6025 5673 5 1552 1362 90 0 3 chr5 126796560 126796926 -25740333 + (TTTC)n Simple_repeat Simple_repeat 1 364 0 5 1552 960 57 0 0 chr5 126796927 126797050 -25740209 + (TCTCCC)n Simple_repeat Simple_repeat 3 125 0 5 1552 637 166 130 19 chr5 126797139 126797293 -25739966 + MTD LTR MaLR 233 403 -16 5 1552 240 35 0 0 chr5 126797376 126797405 -25739854 + (T)n Simple_repeat Simple_repeat 1 29 0 5 1552 1664 48 68 34 chr5 126797506 126797741 -25739518 - L1Md_F3 LINE L1 0 6584 6342 5 1552 3271 61 50 92 chr5 126797877 126798419 -25738840 - MURVY-LTR LTR ERV1 0 519 1 5 1552 196 158 17 17 chr5 126798676 126798734 -25738525 + (TTAGGG)n Simple_repeat Simple_repeat 2 59 0 5 1552 730 107 48 0 chr5 126798808 126798976 -25738283 + (TTAGGG)n Simple_repeat Simple_repeat 4 179 0 5 1552 231 214 18 0 chr5 126798989 126799045 -25738214 + (TTAGGG)n Simple_repeat Simple_repeat 5 61 0 5 1552 300 323 125 39 chr5 126799249 126799481 -25737778 + MLT1A LTR MaLR 75 326 -48 5 1552 962 148 6 0 chr5 126799529 126799705 -25737554 + CT-rich Low_complexity Low_complexity 2 178 0 5 1552 429 20 0 0 chr5 126799925 126799975 -25737284 + (TA)n Simple_repeat Simple_repeat 2 51 0 5 1552 732 311 5 19 chr5 126800005 126800227 -25737032 - ZP3AR Satellite Satellite -4 219 1 5 1552 387 304 32 0 chr5 126800886 126801011 -25736248 + ID_B1 SINE B4 76 204 -20 5 1552 487 293 0 0 chr5 126801025 126801148 -25736111 + RSINE1 SINE B4 1 123 -42 5 1552 360 0 0 0 chr5 126801188 126801228 -25736031 + (TC)n Simple_repeat Simple_repeat 2 41 0 5 1552 222 37 0 0 chr5 126801228 126801254 -25736005 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1552 267 308 60 0 chr5 126802230 126802347 -25734912 - RMER15 LTR ERVL -49 526 403 5 1552 344 277 70 128 chr5 126802415 126802507 -25734752 - Lx8 LINE L1 -198 7275 7208 5 1552 2898 152 27 8 chr5 126802507 126803025 -25734234 + RLTR11A LTR ERVK 1 528 0 5 1552 344 277 70 128 chr5 126803025 126803189 -25734070 - Lx8 LINE L1 -266 7207 7035 5 1552 664 219 181 22 chr5 126803669 126803851 -25733408 - B3 SINE B2 -1 215 5 5 1552 790 209 53 29 chr5 126804075 126804282 -25732977 + B3 SINE B2 5 216 0 5 1552 671 248 51 15 chr5 126804433 126804630 -25732629 + B3 SINE B2 9 212 -4 5 1552 227 360 8 16 chr5 126804720 126804847 -25732412 - MER63D DNA AcHobo -309 752 627 5 1552 623 209 203 0 chr5 126805425 126805602 -25731657 + B3 SINE B2 1 213 -3 5 1552 713 176 0 0 chr5 126805980 126806099 -25731160 + B3 SINE B2 3 121 -95 5 1552 504 138 13 27 chr5 126806225 126806374 -25730885 + (TCTCTG)n Simple_repeat Simple_repeat 2 148 0 5 1552 287 228 43 21 chr5 126806613 126806707 -25730552 + B3 SINE B2 121 216 0 5 1552 207 0 0 0 chr5 126807168 126807191 -25730068 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1552 754 131 11 38 chr5 126807231 126807414 -25729845 + CT-rich Low_complexity Low_complexity 3 180 0 5 1552 1010 230 35 5 chr5 126807422 126807623 -25729636 - B3 SINE B2 -9 207 1 5 1552 475 353 39 1 chr5 126807962 126808171 -25729088 - B4A SINE B4 -25 267 41 5 1552 547 266 77 13 chr5 126808818 126808974 -25728285 - B3A SINE B2 -30 168 3 5 1552 411 73 0 0 chr5 126808977 126809032 -25728227 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 5 1552 238 304 0 92 chr5 126809032 126809119 -25728140 - PB1D10 SINE Alu -12 105 27 5 1552 225 0 0 0 chr5 126809345 126809370 -25727889 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 5 1552 651 299 64 50 chr5 126809481 126809763 -25727496 + B4A SINE B4 3 288 -4 5 1552 266 331 60 71 chr5 126809689 126809956 -25727303 + RMER12 LTR ERVK 725 988 -334 5 1552 275 182 0 29 chr5 126810037 126810105 -25727154 + (TATG)n Simple_repeat Simple_repeat 2 67 0 5 1552 188 146 49 0 chr5 126810199 126810240 -25727019 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 5 1552 195 42 0 0 chr5 126810240 126810264 -25726995 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1552 188 146 49 0 chr5 126810338 126810379 -25726880 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 5 1552 384 311 73 6 chr5 126810718 126810883 -25726376 + MER20 DNA MER1_type 37 212 -7 5 1552 252 237 101 106 chr5 126811440 126811629 -25725630 - ORR1E LTR MaLR -166 193 6 5 1552 1399 276 20 35 chr5 126811761 126812459 -25724800 + Lx5 LINE L1 6062 6886 -574 5 1552 595 306 33 11 chr5 126812442 126812485 -25724774 + Lx5 LINE L1 6689 6731 -319 5 1552 813 73 0 0 chr5 126812485 126812594 -25724665 + (TC)n Simple_repeat Simple_repeat 2 110 0 5 1552 595 306 33 11 chr5 126812594 126812732 -25724527 + Lx5 LINE L1 6732 6873 -177 5 1552 579 313 36 41 chr5 126812871 126813091 -25724168 + B4A SINE B4 1 219 -73 5 1552 534 31 0 0 chr5 126813149 126813213 -25724046 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1552 256 279 6 0 chr5 126813238 126813320 -25723939 + B1F1 SINE Alu 37 120 0 5 1552 1116 113 0 0 chr5 126814418 126814631 -25722628 + (GAA)n Simple_repeat Simple_repeat 1 213 0 5 1552 315 0 0 0 chr5 126815036 126815071 -25722188 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1552 25 0 0 0 chr5 126815071 126815096 -25722163 + AT_rich Low_complexity Low_complexity 1 25 0 5 1552 235 240 0 0 chr5 126815210 126815260 -25721999 + A-rich Low_complexity Low_complexity 4 53 0 5 1552 401 283 55 42 chr5 126815281 126815517 -25721742 + RLTR42-int LTR ERVK 1161 1399 -4123 5 1552 479 112 12 0 chr5 126816452 126816532 -25720727 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1552 260 305 40 158 chr5 126816712 126816965 -25720294 - RMER15 LTR ERVL -16 559 337 5 1552 399 302 62 19 chr5 126817557 126817683 -25719576 - Lx9 LINE L1 -281 7363 7234 5 1552 2599 60 116 6 chr5 126817683 126818036 -25719223 + MTA_Mm LTR MaLR 5 396 0 6 1552 399 322 62 18 chr5 126818036 126818091 -25719168 - Lx9 LINE L1 -411 7233 7197 5 1552 239 326 93 29 chr5 126820173 126820312 -25716947 - Lx8 LINE L1 -112 7361 7214 6 1552 363 262 74 12 chr5 126820356 126820518 -25716741 + L1MD LINE L1 3562 3733 -2413 6 1552 646 272 18 12 chr5 126820585 126820749 -25716510 + B3A SINE B2 1 165 -33 6 1552 405 0 0 0 chr5 126820749 126820794 -25716465 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1552 486 0 0 0 chr5 126820853 126820907 -25716352 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 6 1552 346 321 35 39 chr5 126821170 126821426 -25715833 + L1M4 LINE L1 4166 4420 -1726 6 1552 338 312 76 46 chr5 126821494 126821756 -25715503 + L1M4 LINE L1 4130 4399 -1747 6 1552 1066 224 29 0 chr5 126821762 126821972 -25715287 + B3 SINE B2 1 216 0 6 1552 997 119 14 0 chr5 126821995 126822138 -25715121 + B1_Mur4 SINE Alu 1 145 -5 6 1552 343 0 43 0 chr5 126822141 126822188 -25715071 + (ATG)n Simple_repeat Simple_repeat 1 49 0 6 1552 491 272 217 29 chr5 126822392 126822839 -25714420 - Lx8 LINE L1 0 7473 6943 6 1552 562 307 22 10 chr5 126822865 126823110 -25714149 - L1MA4 LINE L1 -372 5928 5681 6 1552 833 286 36 39 chr5 126823458 126823965 -25713294 - L1MA4 LINE L1 -517 5661 5113 6 1552 800 276 41 29 chr5 126823970 126824310 -25712949 + L1M4 LINE L1 4767 5110 -1036 6 1552 433 275 12 0 chr5 126824564 126824731 -25712528 + (TG)n Simple_repeat Simple_repeat 1 169 0 6 1552 602 184 0 0 chr5 126824836 126824939 -25712320 + L1MB7 LINE L1 6073 6175 -9 6 1552 306 215 0 0 chr5 126825519 126825584 -25711675 + B3 SINE B2 86 150 -66 6 1552 315 49 0 0 chr5 126825586 126825627 -25711632 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1552 1824 211 72 0 chr5 126826323 126826712 -25710547 + MTD LTR MaLR 3 419 0 6 1552 21 0 0 0 chr5 126828365 126828386 -25708873 + AT_rich Low_complexity Low_complexity 1 21 0 6 1552 717 79 0 0 chr5 126828402 126828503 -25708756 - B2_Mm2 SINE B2 -94 101 1 6 1552 329 161 0 0 chr5 126828522 126828578 -25708681 + HAL1-3A_ME LINE L1 1967 2022 -836 6 1552 239 217 0 0 chr5 126828580 126828626 -25708633 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1552 198 0 0 0 chr5 126829247 126829269 -25707990 + (ATTG)n Simple_repeat Simple_repeat 4 25 0 6 1552 180 0 0 0 chr5 126829273 126829293 -25707966 + (TG)n Simple_repeat Simple_repeat 1 20 0 6 1552 576 130 0 0 chr5 126829312 126829404 -25707855 + (GAA)n Simple_repeat Simple_repeat 1 92 0 6 1552 681 195 0 30 chr5 126829405 126829537 -25707722 - B3A SINE B2 -63 135 8 6 1552 570 98 0 0 chr5 126829729 126829811 -25707448 + (GA)n Simple_repeat Simple_repeat 2 83 0 6 1552 392 289 20 55 chr5 126829950 126830151 -25707108 + B3A SINE B2 1 194 -4 6 1552 761 207 0 0 chr5 126830302 126830442 -25706817 - B1_Mus2 SINE Alu 0 147 8 6 1552 477 0 0 0 chr5 126830470 126830523 -25706736 + (TG)n Simple_repeat Simple_repeat 1 53 0 6 1552 227 366 16 24 chr5 126830816 126830942 -25706317 + ORR1D2 LTR MaLR 238 362 -8 6 1552 2108 142 24 101 chr5 126830942 126831366 -25705893 - ORR1B1 LTR MaLR -3 391 1 6 1552 900 250 24 5 chr5 126831399 126831604 -25705655 + B3 SINE B2 2 210 -6 6 1552 441 0 0 0 chr5 126831739 126831788 -25705471 + (TA)n Simple_repeat Simple_repeat 1 49 0 6 1552 303 266 22 75 chr5 126831789 126831923 -25705336 - Lx8 LINE L1 -94 7379 7253 6 1552 203 125 25 0 chr5 126832794 126832834 -25704425 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 6 1552 793 200 67 89 chr5 126832849 126832988 -25704271 + MTD LTR MaLR 1 143 -276 6 1552 2818 180 77 66 chr5 126832988 126833596 -25703663 + RLTR18 LTR ERVK 1 615 -1 6 1552 793 200 67 89 chr5 126833596 126833681 -25703578 + MTD LTR MaLR 144 220 -199 6 1552 661 263 129 70 chr5 126833679 126833965 -25703294 + MTE2a LTR MaLR 63 365 -14 6 1552 469 297 46 79 chr5 126833975 126834216 -25703043 + MER89 LTR ERV1 325 557 -2 6 1552 635 277 216 30 chr5 126834531 126834933 -25702326 - RMER5 LTR ERV1 -18 516 40 6 1552 726 238 0 7 chr5 126836916 126837064 -25700195 - RSINE1 SINE B4 -17 148 2 6 1552 345 100 0 0 chr5 126837365 126837415 -25699844 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1552 992 72 0 7 chr5 126837425 126837565 -25699694 + B1_Mm SINE Alu 9 147 0 6 1552 207 0 0 0 chr5 126837567 126837590 -25699669 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1552 448 273 185 11 chr5 126838043 126838221 -25699038 - B3 SINE B2 -7 209 1 6 1552 234 0 0 0 chr5 126839783 126839809 -25697450 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1552 2520 74 3 9 chr5 126840092 126840419 -25696840 - ORR1A2 LTR MaLR 0 327 3 6 1552 763 169 11 36 chr5 126841030 126841209 -25696050 - B3A SINE B2 -40 176 1 6 1552 357 24 0 0 chr5 126842673 126842715 -25694544 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1552 422 162 50 0 chr5 126842719 126842818 -25694441 - Lx9 LINE L1 -42 7602 7499 6 1552 42056 3 0 1 chr5 126842821 126847007 -25690252 - L1Md_A LINE L1 -1 6581 2402 6 1552 3344 36 3 0 chr5 126847007 126847391 -25689868 - IAPEY_LTR LTR ERVK 0 385 1 6 1552 42056 6 0 1 chr5 126847391 126849786 -25687473 - L1Md_A LINE L1 -3482 2401 7 6 1552 856 191 88 25 chr5 126849787 126849991 -25687268 - Lx9 LINE L1 -158 7486 7270 6 1552 616 297 71 15 chr5 126850339 126850537 -25686722 - B4A SINE B4 -82 210 2 6 1552 279 0 0 0 chr5 126850760 126850791 -25686468 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 6 1552 517 285 148 38 chr5 126852409 126852672 -25684587 + B4A SINE B4 1 292 0 6 1552 222 207 0 0 chr5 126852672 126852730 -25684529 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1552 788 185 16 156 chr5 126853242 126853498 -25683761 - URR1B DNA MER1_type -1 224 5 6 1552 22 56 0 0 chr5 126854809 126854845 -25682414 + AT_rich Low_complexity Low_complexity 1 36 0 6 1552 770 242 0 72 chr5 126854961 126855170 -25682089 + B3A SINE B2 4 197 -1 6 1552 341 197 17 105 chr5 126855303 126855426 -25681833 - B1F SINE Alu 0 120 5 6 1552 910 232 21 12 chr5 126855790 126856035 -25681224 + ORR1E LTR MaLR 1 271 -108 6 1552 8518 24 0 0 chr5 126856050 126857027 -25680232 - L1_Mm LINE L1 -442 5441 4465 6 1552 1166 66 7 13 chr5 126857025 126857153 -25680106 + L1_Mm LINE L1 5459 5586 -297 6 1552 9031 12 0 0 chr5 126857153 126858148 -25679111 + L1Md_T LINE L1 5587 6581 -1 6 1552 1166 66 7 13 chr5 126858148 126858173 -25679086 + L1_Mm LINE L1 5587 5611 -272 6 1552 423 0 0 0 chr5 126858863 126858910 -25678349 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1552 739 239 154 27 chr5 126858936 126859228 -25678031 + Lx8 LINE L1 7135 7463 -10 6 1552 256 247 11 56 chr5 126859165 126859255 -25678004 + RMER1C Other Other 1252 1337 -5 6 1552 1211 89 0 6 chr5 126859869 126860049 -25677210 + (TCC)n Simple_repeat Simple_repeat 1 179 0 6 1552 1658 229 6 16 chr5 126860590 126860954 -25676305 - MTEa LTR MaLR 0 379 20 6 1552 2303 149 11 0 chr5 126860985 126861367 -25675892 - ORR1B1 LTR MaLR -8 386 1 6 1552 228 130 0 0 chr5 126862367 126862413 -25674846 + (TCTCTG)n Simple_repeat Simple_repeat 1 46 0 6 1552 2107 101 3 58 chr5 126862502 126862848 -25674411 - ORR1A2 LTR MaLR 0 327 1 6 1552 418 333 42 28 chr5 126862848 126862988 -25674271 + RSINE1 SINE B4 22 163 -2 6 1552 297 0 0 0 chr5 126864800 126864833 -25672426 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1552 495 0 0 0 chr5 126864833 126864887 -25672372 + (GA)n Simple_repeat Simple_repeat 2 56 0 6 1552 594 118 0 0 chr5 126865453 126865546 -25671713 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 6 1552 764 317 41 26 chr5 126865867 126865955 -25671304 + RMER15 LTR ERVL 226 315 -260 6 1552 672 13 0 0 chr5 126865955 126866032 -25671227 + (GA)n Simple_repeat Simple_repeat 1 77 0 6 1552 764 317 41 26 chr5 126866032 126866286 -25670973 + RMER15 LTR ERVL 316 572 -3 6 1552 5739 52 7 4 chr5 126866571 126867281 -25669978 - L1Md_F2 LINE L1 -12 6570 5859 6 1552 21008 52 6 1 chr5 126867281 126869917 -25667342 - L1_Mm LINE L1 -905 4978 2331 6 1552 966 28 0 0 chr5 126869917 126870024 -25667235 - U6 snRNA snRNA 0 107 1 6 1552 689 246 40 88 chr5 126870528 126870578 -25666681 - B3 SINE B2 0 216 173 6 1552 456 19 0 0 chr5 126870578 126870631 -25666628 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1552 689 246 40 88 chr5 126870631 126870807 -25666452 - B3 SINE B2 -44 172 1 6 1552 444 19 0 0 chr5 126870965 126871018 -25666241 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1552 686 236 12 18 chr5 126872750 126872914 -25664345 + B3 SINE B2 8 170 -46 6 1552 767 186 0 33 chr5 126873146 126873296 -25663963 - B1_Mus1 SINE Alu -1 147 3 6 1552 877 271 53 25 chr5 126873491 126873775 -25663484 - B4A SINE B4 0 292 1 6 1552 4724 73 26 2 chr5 126873866 126874481 -25662778 + L1_Mus3 LINE L1 6006 6635 -3 6 1552 201 302 0 0 chr5 126874530 126874583 -25662676 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1552 736 271 37 78 chr5 126874584 126874610 -25662649 - B4 SINE B4 0 292 276 6 1552 342 45 0 0 chr5 126874610 126874654 -25662605 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1552 736 271 37 78 chr5 126874654 126874871 -25662388 - B4 SINE B4 -17 275 59 6 1552 628 321 66 38 chr5 126875031 126875423 -25661836 - L1MD1 LINE L1 -247 5995 5593 6 1552 2173 57 25 14 chr5 126875436 126875721 -25661538 - L1_Mus1 LINE L1 -4 6563 6276 6 1552 200 172 15 59 chr5 126876458 126876526 -25660733 + A-rich Low_complexity Low_complexity 5 69 0 6 1552 842 95 0 8 chr5 126876915 126877042 -25660217 + (TTTC)n Simple_repeat Simple_repeat 1 126 0 6 1552 1013 31 0 0 chr5 126877043 126877172 -25660087 - B1_Mus1 SINE Alu -13 135 7 6 24 648 272 71 185 chr5 126877285 126877735 -25659524 - MTD LTR MaLR -14 407 22 6 1553 221 321 0 21 chr5 126878933 126879226 -25658033 + (CATA)n Simple_repeat Simple_repeat 1 286 0 6 1553 333 0 0 0 chr5 126879275 126879312 -25657947 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1553 1550 200 92 14 chr5 126879326 126879686 -25657573 - MTD LTR MaLR -14 405 18 6 1553 484 251 122 51 chr5 126880597 126880794 -25656465 + Lx8 LINE L1 6823 7033 -440 7 1553 313 149 30 0 chr5 126880794 126880861 -25656398 + GA-rich Low_complexity Low_complexity 2 70 0 7 1553 318 311 103 39 chr5 126880935 126881139 -25656120 + Lx8 LINE L1 7248 7464 -9 7 1553 183 42 0 0 chr5 126881142 126881166 -25656093 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1553 320 0 0 24 chr5 126881985 126882026 -25655233 + (TCTG)n Simple_repeat Simple_repeat 4 43 0 7 1553 1415 235 78 8 chr5 126882267 126882628 -25654631 - MTD LTR MaLR -15 404 19 7 1553 277 286 87 31 chr5 126882724 126882906 -25654353 - B3A SINE B2 -5 190 1 7 1553 377 312 121 32 chr5 126884287 126884511 -25652748 + L1ME1 LINE L1 5526 5780 -399 7 1553 473 110 12 0 chr5 126884511 126884593 -25652666 + (TG)n Simple_repeat Simple_repeat 1 83 0 7 1553 377 321 119 37 chr5 126884593 126884735 -25652524 + L1ME1 LINE L1 5781 5917 -442 7 1553 888 252 45 37 chr5 126885224 126885492 -25651767 + MTEa LTR MaLR 107 376 -3 7 1553 315 0 0 0 chr5 126885593 126885628 -25651631 + (CAGGA)n Simple_repeat Simple_repeat 3 37 0 7 1553 1007 274 81 38 chr5 126885646 126886018 -25651241 + Lx8 LINE L1 7081 7468 -5 7 1553 270 327 79 18 chr5 126886382 126886547 -25650712 + MER68 LTR ERVL 148 322 -241 7 1553 785 301 9 0 chr5 126886658 126886874 -25650385 - ID_B1 SINE B4 -5 219 2 7 1553 830 52 9 0 chr5 126886919 126887035 -25650224 + (TATATG)n Simple_repeat Simple_repeat 4 120 0 7 1553 23 0 0 0 chr5 126887211 126887234 -25650025 + AT_rich Low_complexity Low_complexity 1 23 0 7 1553 25 31 0 0 chr5 126887403 126887435 -25649824 + AT_rich Low_complexity Low_complexity 1 32 0 7 1553 517 321 28 3 chr5 126887910 126888087 -25649172 + Lx8 LINE L1 6605 6784 -912 7 1553 700 80 27 0 chr5 126888094 126888206 -25649053 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 7 1553 1115 82 0 26 chr5 126888206 126888357 -25648902 - B1_Mus2 SINE Alu 0 147 1 7 1553 1230 120 15 20 chr5 126888358 126888554 -25648705 - B2_Mm2 SINE B2 0 195 1 7 1553 334 345 94 19 chr5 126888564 126888615 -25648644 + Lx8 LINE L1 6801 6851 -622 7 1553 630 0 0 0 chr5 126888615 126888685 -25648574 + (TC)n Simple_repeat Simple_repeat 1 70 0 7 1553 334 345 94 19 chr5 126888685 126888846 -25648413 + Lx8 LINE L1 6852 7029 -444 7 1553 13658 75 3 4 chr5 126888814 126891272 -25645987 + L1_Mus1 LINE L1 4111 6567 0 7 1553 34 24 0 0 chr5 126891326 126891367 -25645892 + AT_rich Low_complexity Low_complexity 1 41 0 7 1553 860 263 123 18 chr5 126891410 126891751 -25645508 + Lx8 LINE L1 7088 7464 -9 7 1553 1346 224 87 42 chr5 126891780 126892181 -25645078 + MTD LTR MaLR 1 419 0 7 1553 375 314 55 32 chr5 126892187 126892404 -25644855 - L1MB1 LINE L1 -43 6146 5925 7 1553 325 123 0 47 chr5 126892460 126892545 -25644714 + (TCTCTG)n Simple_repeat Simple_repeat 3 83 0 7 1553 420 71 0 0 chr5 126892545 126892601 -25644658 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1553 972 264 22 36 chr5 126892614 126892889 -25644370 - B4A SINE B4 -19 273 3 7 1553 768 259 0 0 chr5 126893779 126893937 -25643322 + B3A SINE B2 5 162 -36 7 1553 369 0 0 0 chr5 126893937 126893978 -25643281 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1553 473 210 68 121 chr5 126893978 126894009 -25643250 + B2_Mm2 SINE B2 163 184 -11 7 1553 1039 178 6 0 chr5 126894761 126894941 -25642318 - B3 SINE B2 -1 215 35 7 1553 318 369 19 0 chr5 126895124 126895284 -25641975 + MIR SINE MIR 58 220 -42 7 1553 28 0 0 0 chr5 126895388 126895416 -25641843 + AT_rich Low_complexity Low_complexity 1 28 0 7 1553 296 291 23 11 chr5 126896819 126896906 -25640353 - L1MCc LINE L1 -5988 435 348 7 1553 195 69 0 0 chr5 126897347 126897376 -25639883 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 7 1553 180 152 0 0 chr5 126897588 126897621 -25639638 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 7 1553 918 171 0 14 chr5 126897623 126897771 -25639488 - B1_Mus1 SINE Alu -1 147 2 7 1553 243 0 0 0 chr5 126898596 126898623 -25638636 + (TAA)n Simple_repeat Simple_repeat 2 28 0 7 1553 618 274 97 91 chr5 126899691 126900020 -25637239 + ORR1E LTR MaLR 14 344 -15 7 1553 656 146 7 44 chr5 126900119 126900135 -25637124 - URR1B DNA MER1_type -3 222 212 7 1553 3093 61 8 5 chr5 126900135 126900530 -25636729 + MTA_Mm LTR MaLR 1 396 0 7 1553 656 146 7 44 chr5 126900530 126900649 -25636610 - URR1B DNA MER1_type -14 211 92 7 1553 3036 23 3 0 chr5 126900649 126901001 -25636258 - L1Md_F2 LINE L1 -547 6035 5683 7 1553 4645 57 0 3 chr5 126901001 126901579 -25635680 + L1Md_F2 LINE L1 6007 6582 0 7 1553 361 158 281 0 chr5 126901591 126901673 -25635586 - URR1B DNA MER1_type -121 104 1 7 1553 607 192 71 38 chr5 126901994 126902178 -25635081 + Lx2B LINE L1 6811 7000 0 7 1553 274 286 65 94 chr5 126902339 126902509 -25634750 - Lx8 LINE L1 -3 7470 7306 7 1553 225 301 0 67 chr5 126903093 126903182 -25634077 - MER5A DNA MER1_type -103 86 4 7 1553 718 210 154 11 chr5 126903598 126903786 -25633473 + B3 SINE B2 2 216 0 7 1553 297 0 0 0 chr5 126903857 126903890 -25633369 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1553 477 0 0 0 chr5 126903890 126903942 -25633317 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1553 292 241 0 60 chr5 126904401 126904485 -25632774 + MTEa-int LTR MaLR 1500 1578 -2 7 1553 401 248 0 38 chr5 126904487 126904592 -25632667 + MTEa LTR MaLR 1 101 -278 7 1553 1304 216 76 13 chr5 126904960 126905274 -25631985 - Lx8 LINE L1 -136 7337 7004 7 1553 575 274 42 133 chr5 126906521 126906793 -25630466 + Lx9 LINE L1 7166 7414 -230 7 1553 279 0 0 0 chr5 126906793 126906824 -25630435 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1553 575 274 42 133 chr5 126906824 126906837 -25630422 + Lx9 LINE L1 7415 7425 -219 7 1553 306 73 0 0 chr5 126907468 126907509 -25629750 + (TTG)n Simple_repeat Simple_repeat 2 42 0 7 1553 1320 58 0 0 chr5 126907520 126907694 -25629565 + (TCTCC)n Simple_repeat Simple_repeat 1 174 0 7 1553 363 242 0 0 chr5 126907697 126907796 -25629463 + C-rich Low_complexity Low_complexity 1 99 0 7 1553 1461 39 84 162 chr5 126907796 126908104 -25629155 - RLTR10B LTR ERVK 0 292 9 7 1553 320 24 0 0 chr5 126908140 126908182 -25629077 - RLTR10B LTR ERVK -250 42 1 7 1553 226 73 0 47 chr5 126908183 126908226 -25629033 + (TCCCC)n Simple_repeat Simple_repeat 4 44 0 7 1553 612 0 0 0 chr5 126908226 126908294 -25628965 + (TTTTC)n Simple_repeat Simple_repeat 4 71 0 7 1553 561 297 57 5 chr5 126908295 126908488 -25628771 - Lx8 LINE L1 -143 7330 7128 7 1553 314 275 205 13 chr5 126908525 126908676 -25628583 + MLT1A0 LTR MaLR 145 324 -41 7 1553 512 238 68 27 chr5 126908779 126908926 -25628333 + RSINE1 SINE B4 3 155 -10 7 1553 219 217 57 0 chr5 126910450 126910607 -25626652 + (TAGA)n Simple_repeat Simple_repeat 4 169 0 7 1553 1153 254 26 43 chr5 126911551 126911940 -25625319 + MTE2a LTR MaLR 27 404 -15 7 1553 759 234 6 30 chr5 126912258 126912425 -25624834 - B3A SINE B2 -17 181 19 7 1553 423 38 0 0 chr5 126913346 126913399 -25623860 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1553 406 299 7 7 chr5 126913419 126913557 -25623702 - Lx8 LINE L1 -361 7112 6975 7 1553 1089 81 0 0 chr5 126914881 126915030 -25622229 + (TTCC)n Simple_repeat Simple_repeat 4 152 0 7 1553 186 143 0 0 chr5 126915904 126915939 -25621320 + (TTC)n Simple_repeat Simple_repeat 2 36 0 7 1553 284 164 0 35 chr5 126916034 126916091 -25621168 - B2_Mm2 SINE B2 -94 101 47 7 1553 768 114 16 0 chr5 126916138 126916261 -25620998 - B2_Mm1t SINE B2 -68 125 1 7 1553 564 244 48 58 chr5 126916634 126916857 -25620402 + MTE2a LTR MaLR 29 217 -162 7 1553 725 69 0 10 chr5 126916891 126916994 -25620265 - B1_Mus2 SINE Alu 0 147 46 7 1553 2118 154 89 65 chr5 126916990 126917498 -25619761 + RLTR11A LTR ERVK 9 528 0 7 1553 478 243 117 7 chr5 126917500 126917645 -25619614 + MTE2a LTR MaLR 213 373 -6 7 1553 862 246 56 66 chr5 126917924 126918341 -25618918 - MTE2a LTR MaLR -14 405 1 7 1553 31 44 0 0 chr5 126919491 126919536 -25617723 + AT_rich Low_complexity Low_complexity 1 45 0 7 1553 574 279 0 62 chr5 126921001 126921211 -25616048 - B3A SINE B2 -1 197 1 7 1553 529 276 20 40 chr5 126921219 126921370 -25615889 - B3A SINE B2 -24 174 27 7 1553 7312 73 4 5 chr5 126921370 126922321 -25614938 - L1_Mus3 LINE L1 -3 6635 5686 7 1553 3377 46 2 0 chr5 126922402 126922797 -25614462 - MTA_Mm LTR MaLR 0 396 1 7 1553 8141 73 18 3 chr5 126922797 126923879 -25613380 - MTA_Mm-int LTR MaLR 0 1098 1 7 1553 2708 53 3 0 chr5 126923879 126924234 -25613025 - MTA_Mm LTR MaLR 0 396 41 7 1553 222 62 0 0 chr5 126924582 126924614 -25612645 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 7 1553 338 229 19 103 chr5 126924614 126924628 -25612631 - MTEb LTR MaLR -40 339 328 7 1553 3169 75 2 0 chr5 126924628 126925027 -25612232 - MTB LTR MaLR 0 400 1 7 1553 338 229 19 103 chr5 126925027 126925119 -25612140 - MTEb LTR MaLR -52 327 242 7 1553 449 359 21 8 chr5 126926137 126926376 -25610883 - MER68 LTR ERVL -321 242 1 7 1553 225 340 20 54 chr5 126927908 126928057 -25609202 + RMER5 LTR ERV1 228 371 -163 7 1553 213 88 0 0 chr5 126928206 126928223 -25609036 + (CAAAA)n Simple_repeat Simple_repeat 2 18 0 7 1553 901 80 37 0 chr5 126928223 126928385 -25608874 + (CAAAC)n Simple_repeat Simple_repeat 2 169 0 7 1553 213 88 0 0 chr5 126928385 126928401 -25608858 + (CAAAA)n Simple_repeat Simple_repeat 4 19 0 7 1553 245 75 0 24 chr5 126929709 126929750 -25607509 + (TG)n Simple_repeat Simple_repeat 2 41 0 7 1553 2503 89 3 0 chr5 126929816 126930142 -25607117 + ORR1A2 LTR MaLR 1 327 0 7 1553 3697 188 47 21 chr5 126930223 126931013 -25606246 - Lx9 LINE L1 -4 7640 6831 7 1553 437 364 12 24 chr5 126931025 126931191 -25606068 - B4A SINE B4 -128 164 1 7 1553 445 244 16 31 chr5 126931210 126931337 -25605922 - B1F1 SINE Alu -1 148 24 7 1553 277 359 0 34 chr5 126931218 126931365 -25605894 - ID_B1 SINE B4 -6 218 77 7 1553 209 198 48 24 chr5 126931403 126931486 -25605773 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 7 1553 221 141 45 34 chr5 126931499 126931587 -25605672 + (TA)n Simple_repeat Simple_repeat 2 90 0 7 1553 264 254 0 0 chr5 126931591 126931646 -25605613 - B4 SINE B4 -72 220 166 7 1553 222 178 143 143 chr5 126931646 126931695 -25605564 - PB1D9 SINE Alu -5 114 11 7 1553 372 293 72 47 chr5 126932021 126932297 -25604962 - L1ME4a LINE L1 -216 5908 5626 7 1553 189 0 0 0 chr5 126933314 126933335 -25603924 + (CA)n Simple_repeat Simple_repeat 1 21 0 7 1553 314 224 145 0 chr5 126933643 126933719 -25603540 + RSINE1 SINE B4 2 88 -77 8 1553 4560 10 0 0 chr5 126933726 126934219 -25603040 + MT2_Mm LTR ERVL 1 493 0 8 1553 11433 50 0 1 chr5 126935468 126936864 -25600395 - L1Md_F3 LINE L1 -312 5571 4178 8 1553 244 36 0 0 chr5 126936853 126936881 -25600378 + L1Md_F3 LINE L1 5559 5586 -297 8 1553 8334 28 10 2 chr5 126936882 126937859 -25599400 + L1Md_F3 LINE L1 5588 6572 -12 8 1553 435 122 20 20 chr5 126937937 126938037 -25599222 + (TCTA)n Simple_repeat Simple_repeat 3 102 0 8 1553 658 59 0 38 chr5 126938043 126938149 -25599110 + (TATG)n Simple_repeat Simple_repeat 1 102 0 8 1553 3020 15 3 3 chr5 126938149 126938491 -25598768 + ORR1A0 LTR MaLR 5 346 0 8 1553 453 97 0 0 chr5 126938509 126938581 -25598678 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 8 1553 183 42 0 0 chr5 126938581 126938605 -25598654 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1553 226 315 14 14 chr5 126938608 126938682 -25598577 - ID4_ SINE ID -5 78 5 8 1553 315 0 0 0 chr5 126939451 126939486 -25597773 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1553 562 268 14 7 chr5 126939505 126939648 -25597611 - B3A SINE B2 -54 144 1 8 1553 579 223 32 45 chr5 126940152 126940286 -25596973 + RSINE1 SINE B4 11 143 -22 8 1553 735 62 41 20 chr5 126940286 126940433 -25596826 + (CA)n Simple_repeat Simple_repeat 2 151 0 8 1553 579 223 32 45 chr5 126940433 126940453 -25596806 + RSINE1 SINE B4 144 163 -2 8 1553 249 75 18 36 chr5 126940466 126940521 -25596738 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1553 591 247 21 30 chr5 126941292 126941460 -25595799 + B3 SINE B2 20 197 -1 8 1553 464 59 15 0 chr5 126941539 126941607 -25595652 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 8 1553 423 0 0 0 chr5 126941605 126941652 -25595607 + (TC)n Simple_repeat Simple_repeat 1 47 0 8 1553 252 355 9 0 chr5 126942394 126942501 -25594758 + RMER15 LTR ERVL 372 479 -96 8 1553 503 251 114 49 chr5 126943504 126943688 -25593571 - MTE2a LTR MaLR 0 379 184 8 1553 431 296 161 36 chr5 126944077 126944351 -25592908 + RMER5 LTR ERV1 115 422 -112 8 1553 874 186 31 54 chr5 126944360 126944582 -25592677 + Lx4B LINE L1 6842 7058 0 8 1553 2328 177 93 55 chr5 126945906 126946425 -25590834 + RMER15 LTR ERVL 6 545 -30 8 1553 560 40 13 0 chr5 126946425 126946500 -25590759 + (TG)n Simple_repeat Simple_repeat 2 77 0 8 1553 2328 177 93 55 chr5 126946500 126946529 -25590730 + RMER15 LTR ERVL 546 574 -1 8 1553 393 282 0 0 chr5 126946559 126946733 -25590526 + (CA)n Simple_repeat Simple_repeat 2 175 0 8 1553 471 117 117 0 chr5 126948916 126948993 -25588266 + RLTR28B LTR ERVL 1 86 -395 8 1553 608 150 8 62 chr5 126948997 126949125 -25588134 + RMER4A LTR ERVK 346 466 0 8 1553 2441 155 16 21 chr5 126949497 126949920 -25587339 + MTC LTR MaLR 1 421 0 8 1553 2369 183 43 93 chr5 126950195 126950751 -25586508 - RLTR11A LTR ERVK 0 528 1 8 1553 21 0 0 0 chr5 126951385 126951406 -25585853 + AT_rich Low_complexity Low_complexity 1 21 0 8 1553 2106 178 28 8 chr5 126952319 126952639 -25584620 - RMER4B LTR ERVK 0 585 217 8 1553 471 118 0 0 chr5 126952639 126952715 -25584544 + (TA)n Simple_repeat Simple_repeat 2 77 0 8 1553 2106 176 40 12 chr5 126952715 126952918 -25584341 - RMER4B LTR ERVK -369 216 13 8 1553 1026 258 4 0 chr5 126953213 126953457 -25583802 - MTEb LTR MaLR -12 367 123 8 1553 371 238 179 14 chr5 126953466 126953611 -25583648 - MTEb LTR MaLR -210 169 1 8 1553 863 229 3 21 chr5 126954675 126954958 -25582301 + GA-rich Low_complexity Low_complexity 1 277 0 8 1553 1303 160 5 5 chr5 126955058 126955271 -25581988 + B3 SINE B2 4 216 0 8 1553 250 278 0 43 chr5 126955665 126955759 -25581500 + L1M4 LINE L1 3873 3962 -2184 8 1553 455 193 0 0 chr5 126955767 126955855 -25581404 + B3A SINE B2 4 91 -107 8 1553 701 186 50 0 chr5 126955876 126956016 -25581243 + ORR1D1 LTR MaLR 6 152 -222 8 1553 1004 202 36 9 chr5 126956248 126956468 -25580791 + ORR1D1 LTR MaLR 143 368 -6 8 1553 401 298 29 9 chr5 126957038 126957143 -25580116 + B1F SINE Alu 2 108 -41 8 1553 225 333 50 7 chr5 126958810 126958949 -25578310 - L2a LINE L2 0 3426 3282 8 1553 25 31 0 0 chr5 126958966 126958998 -25578261 + AT_rich Low_complexity Low_complexity 1 32 0 8 1553 254 254 0 0 chr5 126959165 126959220 -25578039 - B4 SINE B4 -237 55 1 8 1553 371 312 57 48 chr5 126959365 126959701 -25577558 + L1M5 LINE L1 3086 3424 -2722 8 1553 557 292 51 0 chr5 126959806 126960004 -25577255 + Lx9 LINE L1 6747 7050 -594 8 1553 764 305 65 39 chr5 126960020 126960580 -25576679 + L1M5 LINE L1 3603 4178 -1968 8 1553 675 269 38 6 chr5 126960595 126960778 -25576481 - B3 SINE B2 -27 189 1 8 1553 240 35 0 0 chr5 126960805 126960834 -25576425 + (CCTA)n Simple_repeat Simple_repeat 1 29 0 8 1553 264 261 43 11 chr5 126960834 126960922 -25576337 - MTD LTR MaLR -253 166 55 8 1553 558 0 0 0 chr5 126961753 126961815 -25575444 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 1553 275 289 26 0 chr5 126962990 126963066 -25574193 - ID4 SINE ID -2 81 4 8 1553 717 286 5 5 chr5 126964013 126964206 -25573053 - ID_B1 SINE B4 -31 193 1 8 1553 180 0 0 0 chr5 126964737 126964757 -25572502 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1553 537 58 0 0 chr5 126964982 126965051 -25572208 + (TCCC)n Simple_repeat Simple_repeat 4 72 0 8 1553 183 167 0 0 chr5 126965051 126965093 -25572166 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1553 680 275 62 46 chr5 126965097 126965337 -25571922 - B4A SINE B4 -1 291 48 8 1553 293 268 0 14 chr5 126966102 126966174 -25571085 + CT-rich Low_complexity Low_complexity 4 74 0 8 1553 616 217 25 8 chr5 126966194 126966315 -25570944 - ID_B1 SINE B4 0 224 102 8 1553 612 0 0 0 chr5 126966704 126966772 -25570487 + (TTCC)n Simple_repeat Simple_repeat 2 69 0 8 1553 473 272 132 0 chr5 126967588 126967724 -25569535 + B3A SINE B2 3 156 -42 8 1553 204 228 0 0 chr5 126967735 126967792 -25569467 + CT-rich Low_complexity Low_complexity 3 59 0 8 1553 323 216 178 40 chr5 126967861 126967962 -25569297 + B3 SINE B2 3 117 -99 8 1553 203 167 0 0 chr5 126968418 126968454 -25568805 + (TG)n Simple_repeat Simple_repeat 1 36 0 8 1553 835 317 25 7 chr5 126968454 126968737 -25568522 - B4A SINE B4 0 292 5 8 1553 378 0 0 0 chr5 126968768 126968810 -25568449 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1553 510 314 12 30 chr5 126968833 126968997 -25568262 - B3A SINE B2 -18 180 20 8 1553 619 237 107 73 chr5 126970194 126970399 -25566860 + B3 SINE B2 1 212 -4 8 1553 576 209 97 7 chr5 126971153 126971307 -25565952 - RMER15 LTR ERVL 0 575 408 8 1553 5424 108 27 58 chr5 126971381 126972316 -25564943 - RMER17A2 LTR ERVK 0 906 1 8 1553 501 285 68 154 chr5 126972364 126972733 -25564526 - RMER20B LTR ERVK -48 579 243 8 1553 1014 201 233 14 chr5 126972920 126973208 -25564051 - RMER15 LTR ERVL -191 384 34 8 1553 667 206 209 31 chr5 126974083 126974274 -25562985 + URR1A DNA MER1_type 2 226 0 8 1553 358 339 11 17 chr5 126975532 126975712 -25561547 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 8 1553 1287 235 52 54 chr5 126976032 126976401 -25560858 + ORR1D2 LTR MaLR 1 368 -2 8 1553 224 256 49 37 chr5 126977387 126977468 -25559791 - ID4_ SINE ID 0 83 2 8 1553 526 193 37 0 chr5 126977511 126977620 -25559639 - B3 SINE B2 -5 211 99 8 1553 21 0 0 0 chr5 126978009 126978030 -25559229 + AT_rich Low_complexity Low_complexity 1 21 0 8 1553 467 58 14 0 chr5 126978232 126978278 -25558981 + (GAA)n Simple_repeat Simple_repeat 2 48 0 8 1553 1018 116 0 23 chr5 126978278 126978454 -25558805 + (AGGGGG)n Simple_repeat Simple_repeat 5 176 0 8 1553 467 58 14 0 chr5 126978454 126978476 -25558783 + (GAA)n Simple_repeat Simple_repeat 1 22 0 8 1553 2200 131 19 0 chr5 126978490 126978811 -25558448 + ORR1A2 LTR MaLR 1 327 0 8 1553 225 266 11 34 chr5 126978932 126979111 -25558148 + CT-rich Low_complexity Low_complexity 3 177 0 8 1553 231 290 0 25 chr5 126979162 126979321 -25557938 + CT-rich Low_complexity Low_complexity 1 155 0 8 1553 293 219 24 0 chr5 126979379 126979461 -25557798 + CT-rich Low_complexity Low_complexity 6 89 0 8 1553 405 328 19 17 chr5 126980371 126980496 -25556763 - B4 SINE B4 -80 212 53 8 1553 378 0 0 0 chr5 126980496 126980538 -25556721 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1553 365 330 202 11 chr5 126980538 126980590 -25556669 - B4A SINE B4 -240 52 1 8 1553 181 196 35 18 chr5 126980824 126980881 -25556378 + MIR SINE MIR 129 186 -76 8 1553 198 0 0 0 chr5 126981091 126981113 -25556146 + (TTTC)n Simple_repeat Simple_repeat 1 22 0 8 1553 262 247 22 90 chr5 126981167 126981188 -25556071 + MTD LTR MaLR 13 35 -384 8 1553 2154 98 37 19 chr5 126981188 126981511 -25555748 - ORR1A4 LTR MaLR 0 329 1 8 1553 262 247 22 90 chr5 126981511 126981578 -25555681 + MTD LTR MaLR 36 95 -324 8 1553 957 271 30 95 chr5 126981784 126982183 -25555076 + MTE2a LTR MaLR 3 375 -4 8 1553 390 42 0 0 chr5 126982285 126982333 -25554926 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1553 312 304 65 0 chr5 126982420 126982512 -25554747 + PB1D10 SINE Alu 1 98 -19 8 1553 310 348 68 78 chr5 126983430 126983751 -25553508 + Lx8 LINE L1 7155 7472 -1 8 1553 1311 214 142 12 chr5 126983930 126984127 -25553132 + ORR1D1 LTR MaLR 1 228 -146 8 1553 198 0 0 0 chr5 126984127 126984149 -25553110 + (CCTG)n Simple_repeat Simple_repeat 1 22 0 8 1553 1311 214 142 12 chr5 126984149 126984282 -25552977 + ORR1D1 LTR MaLR 229 374 0 8 1553 232 200 0 0 chr5 126984291 126984336 -25552923 + ORR1D1 LTR MaLR 330 374 0 8 1553 232 200 0 0 chr5 126984345 126984390 -25552869 + ORR1D1 LTR MaLR 330 374 0 8 1553 396 342 56 94 chr5 126984476 126984815 -25552444 + MLT2B1 LTR ERVL 1 326 -194 8 1553 210 37 0 0 chr5 126984931 126984958 -25552301 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 8 1553 390 42 0 0 chr5 126984959 126985007 -25552252 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1553 290 26 0 25 chr5 126985057 126985097 -25552162 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1553 1515 186 81 25 chr5 126985969 126986327 -25550932 + MTC LTR MaLR 1 378 -43 8 1553 227 294 0 52 chr5 126987385 126987482 -25549777 + RMER5 LTR ERV1 219 310 -224 8 1553 285 312 79 61 chr5 126987793 126987862 -25549397 - MLT1D LTR MaLR -78 427 359 8 1553 180 0 0 0 chr5 126987862 126987882 -25549377 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 8 1553 285 312 79 61 chr5 126987882 126988041 -25549218 - MLT1D LTR MaLR -147 358 195 8 1553 414 0 0 0 chr5 126988211 126988257 -25549002 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1553 3453 170 35 7 chr5 126989337 126989936 -25547323 - Lx4B LINE L1 -350 6708 6093 9 1553 611 180 239 12 chr5 126989914 126990077 -25547182 + Lx4B LINE L1 6697 6896 -162 9 1553 447 19 0 0 chr5 126990167 126990219 -25547040 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 1553 403 310 86 0 chr5 126990301 126990417 -25546842 + RSINE1 SINE B4 2 127 -38 9 1553 378 0 0 0 chr5 126990432 126990474 -25546785 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1553 411 339 69 52 chr5 126990784 126991207 -25546052 + L1MEc LINE L1 30 459 -5941 9 1553 267 198 22 90 chr5 126991514 126991603 -25545656 - L1MA4A LINE L1 -1 6302 6220 9 1553 317 302 72 11 chr5 126991750 126991931 -25545328 + L1MEc LINE L1 1019 1210 -5190 9 1553 389 241 232 88 chr5 126993995 126994245 -25543014 - Lx8 LINE L1 -302 7171 6886 9 1553 482 255 0 0 chr5 126994245 126994351 -25542908 - U6 snRNA snRNA -1 106 1 9 1553 1008 178 6 0 chr5 126994822 126994996 -25542263 - B3 SINE B2 -40 176 2 9 1553 21 0 0 0 chr5 126995054 126995075 -25542184 + AT_rich Low_complexity Low_complexity 1 21 0 9 1553 444 19 0 0 chr5 126995578 126995631 -25541628 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1553 1648 240 5 8 chr5 126996329 126996699 -25540560 - MTEa LTR MaLR -4 375 7 9 1553 207 122 24 24 chr5 126997119 126997161 -25540098 + CT-rich Low_complexity Low_complexity 2 43 0 9 1553 300 281 0 35 chr5 126998412 126998497 -25538762 + B3A SINE B2 2 83 -115 9 1553 289 235 87 14 chr5 126998499 126998568 -25538691 - ID_B1 SINE B4 -53 171 98 9 1553 1721 208 96 10 chr5 126999362 126999746 -25537513 + MTC LTR MaLR 5 421 0 9 1553 288 286 0 117 chr5 126999848 126999959 -25537300 - B3 SINE B2 -14 184 85 9 1553 363 272 50 5 chr5 127000093 127000186 -25537073 + B1_Mur4 SINE Alu 1 140 -10 1 1553 207 0 0 0 chr5 127000238 127000261 -25536998 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2 1553 4295 73 50 7 chr5 127000487 127001049 -25536210 + L1_Mus3 LINE L1 6046 6631 -7 3 1553 1554 253 53 77 chr5 127001384 127001890 -25535369 - RMER5 LTR ERV1 0 534 41 4 1553 273 227 14 70 chr5 127001894 127001965 -25535294 - RMER5 LTR ERV1 -467 67 1 4 1553 1070 232 4 49 chr5 127002003 127002229 -25535030 - B3 SINE B2 0 216 1 5 1553 252 100 0 0 chr5 127002844 127002884 -25534375 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1553 348 281 27 20 chr5 127004329 127004449 -25532810 + B1F1 SINE Alu 2 118 -2 7 1553 22 0 0 0 chr5 127004455 127004477 -25532782 + AT_rich Low_complexity Low_complexity 1 22 0 8 1553 210 167 0 0 chr5 127005154 127005190 -25532069 + A-rich Low_complexity Low_complexity 1 36 0 9 1553 558 308 63 29 chr5 127005383 127005557 -25531702 - B3A SINE B2 -5 193 14 1 1553 588 297 110 127 chr5 127005595 127005874 -25531385 - MT2A LTR ERVL -4 516 231 1 1553 897 197 137 11 chr5 127005968 127006158 -25531101 - B3 SINE B2 -2 214 1 1 1553 432 329 7 32 chr5 127006179 127006333 -25530926 - MT2A LTR ERVL -383 150 1 1 1553 1037 40 0 0 chr5 127007352 127007478 -25529781 - B1_Mus1 SINE Alu -3 145 20 1 1553 24 32 0 0 chr5 127007829 127007860 -25529399 + AT_rich Low_complexity Low_complexity 1 31 0 1 1553 1062 261 70 3 chr5 127007860 127008160 -25529099 + Lx8 LINE L1 6764 7083 -390 1 1553 206 225 14 27 chr5 127008192 127008265 -25528994 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 1554 998 278 54 10 chr5 127009615 127009909 -25527350 + Lx8 LINE L1 6624 6930 -543 1 1554 2467 195 68 14 chr5 127009922 127010027 -25527232 - Lx5 LINE L1 -125 6925 6814 1 1554 1431 55 0 0 chr5 127010027 127010282 -25526977 + (CAGG)n Simple_repeat Simple_repeat 1 255 0 1 1554 2467 195 68 14 chr5 127010282 127010660 -25526599 - Lx5 LINE L1 -237 6813 6416 1 1554 205 186 23 0 chr5 127010669 127010712 -25526547 + GA-rich Low_complexity Low_complexity 5 48 0 2 1554 310 331 108 48 chr5 127010776 127011090 -25526169 + Charlie1 DNA MER1_type 163 495 -2286 2 1554 231 95 62 16 chr5 127011230 127011253 -25526006 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 2 1554 213 39 0 0 chr5 127011253 127011279 -25525980 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1554 231 95 62 16 chr5 127011279 127011319 -25525940 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 2 1554 269 223 20 70 chr5 127011339 127011439 -25525820 - B3 SINE B2 -68 148 2 2 1554 708 325 60 86 chr5 127011439 127012069 -25525190 + Charlie1 DNA MER1_type 774 1387 -1394 2 1554 237 200 0 0 chr5 127012073 127012118 -25525141 + Lx8 LINE L1 6916 6960 -513 1 1554 1285 216 70 106 chr5 127012223 127012651 -25524608 - MTD LTR MaLR -14 405 4 2 1554 530 304 50 29 chr5 127012685 127012824 -25524435 + RSINE1 SINE B4 24 165 0 2 1554 197 132 26 0 chr5 127012825 127012863 -25524396 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 2 1554 661 272 58 34 chr5 127012927 127013220 -25524039 + Charlie1 DNA MER1_type 2338 2637 -144 2 1554 400 139 47 0 chr5 127013712 127013798 -25523461 + GA-rich Low_complexity Low_complexity 5 94 0 2 1554 463 255 10 19 chr5 127014209 127014313 -25522946 - ID_B1 SINE B4 -34 190 88 3 1554 225 310 16 72 chr5 127014212 127014337 -25522922 - MT2B LTR ERVL -338 263 146 3 1554 207 0 0 0 chr5 127014527 127014550 -25522709 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 1554 534 158 167 0 chr5 127015239 127015353 -25521906 - MTD LTR MaLR -14 405 273 3 1554 396 241 148 57 chr5 127016438 127016614 -25520645 - Lx8 LINE L1 -3 7470 7279 3 1554 1376 254 27 46 chr5 127016589 127017002 -25520257 - Lx8 LINE L1 -352 7121 6717 3 1554 432 0 0 0 chr5 127017852 127017900 -25519359 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 1554 896 191 142 11 chr5 127018199 127018389 -25518870 + B3 SINE B2 1 215 -1 3 1554 525 195 68 34 chr5 127019058 127019175 -25518084 + B3 SINE B2 2 122 -94 3 1554 21 0 0 0 chr5 127019339 127019360 -25517899 + AT_rich Low_complexity Low_complexity 1 21 0 3 1554 457 135 63 0 chr5 127020007 127020133 -25517126 + CT-rich Low_complexity Low_complexity 3 136 0 3 1554 1089 244 75 18 chr5 127020792 127021068 -25516191 + MTD LTR MaLR 97 416 -3 4 1554 931 225 40 0 chr5 127022145 127022345 -25514914 + B3 SINE B2 4 211 -5 4 1554 1698 247 73 23 chr5 127022477 127022957 -25514302 - Lx6 LINE L1 -1 7459 6956 4 1554 219 103 0 0 chr5 127023343 127023382 -25513877 + (T)n Simple_repeat Simple_repeat 1 39 0 4 1554 396 0 0 0 chr5 127023431 127023475 -25513784 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1554 455 293 6 57 chr5 127023674 127023851 -25513408 + L1M2 LINE L1 5611 5778 -534 4 1554 238 234 19 0 chr5 127023877 127023984 -25513275 + (TAGA)n Simple_repeat Simple_repeat 3 111 0 4 1554 1755 205 83 31 chr5 127023984 127024371 -25512888 + MTD LTR MaLR 1 407 -12 4 1554 312 275 0 24 chr5 127024613 127024695 -25512564 + ID4 SINE ID 4 83 0 4 1554 227 256 41 33 chr5 127025465 127025586 -25511673 + (TA)n Simple_repeat Simple_repeat 1 122 0 4 1554 438 20 0 0 chr5 127025586 127025637 -25511622 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1554 369 0 0 0 chr5 127025996 127026037 -25511222 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1554 784 315 73 90 chr5 127026037 127026814 -25510445 + L1MC1 LINE L1 5551 6314 -19 5 1554 972 227 66 0 chr5 127026846 127027044 -25510215 + B3 SINE B2 1 211 -5 5 1554 283 333 0 0 chr5 127027233 127027323 -25509936 + (CATA)n Simple_repeat Simple_repeat 2 91 0 5 1554 206 224 11 80 chr5 127027339 127027514 -25509745 + (CATATA)n Simple_repeat Simple_repeat 2 164 0 5 1554 318 106 0 0 chr5 127027517 127027564 -25509695 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1554 280 400 0 6 chr5 127027565 127027721 -25509538 + (CATATA)n Simple_repeat Simple_repeat 4 158 0 5 1554 287 383 0 0 chr5 127027574 127027689 -25509570 + (CA)n Simple_repeat Simple_repeat 1 115 0 5 1554 216 269 0 0 chr5 127027724 127027817 -25509442 + (CA)n Simple_repeat Simple_repeat 2 94 0 5 1554 515 303 67 15 chr5 127028573 127028707 -25508552 + RSINE1 SINE B4 9 149 -16 5 1554 770 204 140 34 chr5 127028758 127028936 -25508323 + B3 SINE B2 1 197 -19 6 1554 21 36 0 0 chr5 127029271 127029299 -25507960 + AT_rich Low_complexity Low_complexity 1 28 0 6 1554 372 252 58 22 chr5 127029634 127029772 -25507487 + L1MCc LINE L1 1116 1258 -5165 6 1554 1375 97 32 0 chr5 127029789 127029975 -25507284 - B2_Mm1a SINE B2 0 193 2 6 1554 521 181 12 0 chr5 127029976 127030127 -25507132 + CT-rich Low_complexity Low_complexity 1 152 0 6 1554 233 237 0 0 chr5 127031943 127032002 -25505257 - L1M2 LINE L1 -700 5591 5533 6 1554 21 36 0 0 chr5 127032124 127032152 -25505107 + AT_rich Low_complexity Low_complexity 1 28 0 6 1554 628 266 129 87 chr5 127032300 127032633 -25504626 + ORR1E LTR MaLR 9 355 -4 6 1554 521 168 19 6 chr5 127032793 127032949 -25504310 + (TAGA)n Simple_repeat Simple_repeat 2 159 0 6 1554 807 108 0 0 chr5 127032949 127033078 -25504181 + (GAAA)n Simple_repeat Simple_repeat 4 132 0 6 1554 323 224 119 71 chr5 127033148 127033178 -25504081 - B2_Mm2 SINE B2 -19 176 150 7 1554 459 48 0 0 chr5 127033178 127033240 -25504019 + (GA)n Simple_repeat Simple_repeat 1 62 0 7 1554 323 224 119 71 chr5 127033240 127033255 -25504004 - B2_Mm2 SINE B2 -46 149 1 7 1554 464 278 49 57 chr5 127033255 127033377 -25503882 - RSINE1 SINE B4 -43 122 2 7 1554 200 312 145 48 chr5 127033975 127034120 -25503139 - L2b LINE L2 -12 3363 3205 7 1554 3710 28 0 0 chr5 127034505 127034901 -25502358 - MTA_Mm LTR MaLR 0 396 1 7 1554 1582 218 134 76 chr5 127034929 127035400 -25501859 - RLTR18B LTR ERVK -14 498 1 7 1554 402 252 0 0 chr5 127035421 127035552 -25501707 + (TA)n Simple_repeat Simple_repeat 1 131 0 7 1554 237 318 27 0 chr5 127035552 127035662 -25501597 - RMER12 LTR ERVK -466 856 744 7 1554 1324 231 25 11 chr5 127037100 127037376 -25499883 + B4 SINE B4 3 282 -10 7 1554 704 214 44 82 chr5 127037447 127037630 -25499629 + B3 SINE B2 3 178 -38 7 1554 1707 173 66 68 chr5 127038730 127039140 -25498119 - MTD LTR MaLR -10 409 1 8 1554 616 290 24 12 chr5 127039613 127039777 -25497482 + B4 SINE B4 1 166 -126 8 1554 297 163 11 21 chr5 127039777 127039871 -25497388 + (CA)n Simple_repeat Simple_repeat 2 94 0 8 1554 1460 169 0 4 chr5 127040040 127040266 -25496993 + URR1B DNA MER1_type 1 225 0 8 1554 194 253 135 52 chr5 127041207 127041303 -25495956 + MIR SINE MIR 130 233 -29 8 1554 294 50 0 0 chr5 127041777 127041817 -25495442 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1554 268 295 60 15 chr5 127042087 127042221 -25495038 + MER5A1 DNA MER1_type 25 164 -2 8 1554 402 21 0 0 chr5 127042687 127042734 -25494525 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1554 323 291 70 0 chr5 127042737 127042823 -25494436 - B3 SINE B2 -21 195 104 8 1554 652 227 6 72 chr5 127042979 127043145 -25494114 - RSINE1 SINE B4 0 165 11 8 1554 828 91 0 0 chr5 127043332 127043464 -25493795 + (TC)n Simple_repeat Simple_repeat 1 132 0 9 1554 404 318 23 8 chr5 127044092 127044225 -25493034 + ID_B1 SINE B4 71 205 -19 9 1554 21 36 0 0 chr5 127044339 127044367 -25492892 + AT_rich Low_complexity Low_complexity 1 28 0 9 1554 690 179 19 94 chr5 127044459 127044619 -25492640 - B1_Mur1 SINE Alu 0 149 2 9 1554 995 220 137 105 chr5 127044742 127044855 -25492404 + MTD LTR MaLR 95 182 -237 9 1554 961 222 18 70 chr5 127044855 127045057 -25492202 + B3 SINE B2 1 196 -20 9 1554 180 0 0 0 chr5 127045057 127045077 -25492182 + (TC)n Simple_repeat Simple_repeat 1 20 0 9 1554 230 56 28 0 chr5 127045085 127045121 -25492138 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1554 961 222 18 70 chr5 127045121 127045137 -25492122 + B3 SINE B2 204 216 0 9 1554 995 220 137 105 chr5 127045137 127045338 -25491921 + MTD LTR MaLR 183 419 0 9 1554 271 258 0 0 chr5 127045827 127045889 -25491370 + L1_Mur3 LINE L1 4234 4295 -1585 9 1554 335 337 100 16 chr5 127045946 127046136 -25491123 - MIRb SINE MIR -10 258 53 9 1554 497 261 35 21 chr5 127046362 127046507 -25490752 - ID_B1 SINE B4 -8 216 70 1 1554 244 206 128 64 chr5 127046613 127046722 -25490537 + MER110 LTR ERV1 359 474 -17 1 1554 384 128 0 0 chr5 127046917 127046995 -25490264 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1554 438 189 156 10 chr5 127046997 127047093 -25490166 - B3A SINE B2 -47 151 42 1 1554 251 354 30 0 chr5 127048808 127048907 -25488352 + MIRc SINE MIR 88 189 -79 1 1554 587 262 150 31 chr5 127048972 127049165 -25488094 + Lx8 LINE L1 6869 7084 -389 1 1554 2485 154 164 47 chr5 127049189 127049760 -25487499 - RMER19B LTR ERVK 0 902 1 1 1554 983 236 111 37 chr5 127049782 127050107 -25487152 + Lx8 LINE L1 7120 7468 -5 1 1554 28 0 0 0 chr5 127050242 127050270 -25486989 + AT_rich Low_complexity Low_complexity 1 28 0 1 1554 919 240 6 0 chr5 127050273 127050448 -25486811 + B3 SINE B2 2 177 -39 1 1554 450 0 0 0 chr5 127050453 127050503 -25486756 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1554 460 351 130 27 chr5 127050658 127050922 -25486337 - B4A SINE B4 0 292 2 1 1554 318 294 43 22 chr5 127050954 127051138 -25486121 - L1MDa LINE L1 -5320 1220 1033 1 1554 528 388 92 13 chr5 127051206 127051585 -25485674 - L1MDa LINE L1 -5707 926 518 1 1554 432 55 0 0 chr5 127051736 127051791 -25485468 + (TGG)n Simple_repeat Simple_repeat 2 56 0 1 1554 1206 253 86 31 chr5 127051825 127052176 -25485083 - ORR1D2 LTR MaLR 0 370 1 1 1554 728 231 50 21 chr5 127053090 127053371 -25483888 + ORR1D1 LTR MaLR 1 362 -12 1 1554 254 221 156 0 chr5 127053509 127053586 -25483673 + L2 LINE L2 2833 2921 -498 1 1554 567 0 0 0 chr5 127053878 127053941 -25483318 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1554 833 239 11 22 chr5 127053943 127054123 -25483136 - B3 SINE B2 -33 183 6 1 1554 688 258 13 26 chr5 127054245 127054400 -25482859 + B3A SINE B2 30 182 -16 1 1554 245 346 43 29 chr5 127054758 127054898 -25482361 - L1MC4 LINE L1 -140 7902 7761 1 1554 276 216 0 0 chr5 127054900 127054951 -25482308 + B3 SINE B2 1 51 -165 1 1554 715 237 7 0 chr5 127055501 127055640 -25481619 + ID_B1 SINE B4 81 220 -4 1 1554 567 135 0 0 chr5 127055665 127055761 -25481498 + (GA)n Simple_repeat Simple_repeat 1 96 0 1 1554 693 276 19 0 chr5 127056781 127056937 -25480322 + B3A SINE B2 6 164 -34 1 1554 293 47 23 0 chr5 127056942 127056985 -25480274 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1554 26 82 0 0 chr5 127057041 127057102 -25480157 + AT_rich Low_complexity Low_complexity 1 61 0 1 1554 205 250 17 0 chr5 127057153 127057213 -25480046 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1554 414 220 31 80 chr5 127057341 127057504 -25479755 + L1MDb LINE L1 969 1123 -5286 1 1554 2662 63 3 0 chr5 127057504 127057836 -25479423 + L1_Mus1 LINE L1 6235 6567 0 1 1554 2587 42 27 130 chr5 127057860 127058267 -25478992 + RLTR10B2 LTR ERVK 1 365 0 1 1554 534 70 0 0 chr5 127058364 127058435 -25478824 + (GGA)n Simple_repeat Simple_repeat 3 73 0 1 1554 1324 224 48 57 chr5 127059553 127059974 -25477285 - Lx8 LINE L1 -10 7463 7047 1 1554 944 179 39 34 chr5 127060293 127060501 -25476758 - Lx9 LINE L1 -4 7640 7432 1 1554 2848 67 0 56 chr5 127060505 127060806 -25476453 + BGLII LTR ERVK 1 287 -134 1 1554 2907 32 11 0 chr5 127060806 127061154 -25476105 - L1Md_F2 LINE L1 0 6582 6231 1 1554 2848 67 0 56 chr5 127061154 127061298 -25475961 + BGLII LTR ERVK 288 421 0 1 1554 1595 209 25 3 chr5 127061326 127061643 -25475616 - Lx9 LINE L1 -327 7317 6994 1 1554 24 0 0 0 chr5 127061801 127061825 -25475434 + AT_rich Low_complexity Low_complexity 1 24 0 1 1554 206 81 27 0 chr5 127062474 127062511 -25474748 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1554 2048 116 24 62 chr5 127062749 127063088 -25474171 - ORR1A3 LTR MaLR 0 326 1 1 1554 1597 175 119 3 chr5 127063221 127063565 -25473694 - ORR1C2 LTR MaLR 0 384 1 1 1554 27 81 0 0 chr5 127064583 127064645 -25472614 + AT_rich Low_complexity Low_complexity 1 62 0 1 1554 219 197 81 126 chr5 127064714 127064801 -25472458 + B3A SINE B2 20 102 -96 1 1554 363 78 0 0 chr5 127064836 127064887 -25472372 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1554 228 242 16 0 chr5 127064961 127065023 -25472236 - MER117 DNA MER1_type -31 166 104 1 1554 3235 57 5 2 chr5 127065584 127065992 -25471267 - L1_Mus3 LINE L1 -1 6637 6229 1 1554 305 280 96 20 chr5 127066718 127066864 -25470395 - RMER15 LTR ERVL -5 570 414 1 1554 236 208 221 0 chr5 127067840 127067917 -25469342 + MTE2b LTR MaLR 5 98 -281 1 1554 1293 196 100 0 chr5 127067986 127068225 -25469034 + MTE2b LTR MaLR 58 312 -67 1 1554 486 33 0 0 chr5 127068225 127068285 -25468974 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 1 1554 1293 196 100 0 chr5 127068285 127068336 -25468923 + MTE2b LTR MaLR 313 376 -3 1 1554 744 189 20 27 chr5 127068981 127069128 -25468131 + B1_Mus2 SINE Alu 2 147 0 1 1554 406 114 25 0 chr5 127069138 127069217 -25468042 + (TC)n Simple_repeat Simple_repeat 1 81 0 1 1554 303 93 0 0 chr5 127069422 127069465 -25467794 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1554 198 0 0 0 chr5 127069892 127069914 -25467345 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1 1554 1921 106 3 70 chr5 127070041 127070397 -25466862 - IAPLTR1a_Mm LTR ERVK -5 332 1 1 1554 13818 26 6 3 chr5 127070397 127071958 -25465301 - IAPEz-int LTR ERVK 0 6481 4916 1 1554 39080 7 5 7 chr5 127071955 127076237 -25461022 - IAPEz-int LTR ERVK -2208 4273 1 1 1554 1870 105 3 77 chr5 127076238 127076590 -25460669 - IAPLTR1a_Mm LTR ERVK -11 326 1 1 1554 2228 94 3 0 chr5 127076775 127077093 -25460166 - ORR1A2 LTR MaLR -8 319 1 1 1554 26 0 0 0 chr5 127077983 127078009 -25459250 + AT_rich Low_complexity Low_complexity 1 26 0 1 1554 452 250 25 16 chr5 127078430 127078552 -25458707 + RMER5 LTR ERV1 1 123 -411 1 1554 189 0 0 0 chr5 127079623 127079644 -25457615 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 1554 414 318 53 58 chr5 127079649 127079839 -25457420 - B3A SINE B2 -5 193 5 1 1554 229 275 74 12 chr5 127080053 127080134 -25457125 - MIR SINE MIR -20 242 157 1 1554 321 260 68 80 chr5 127080208 127080371 -25456888 + RSINE1 SINE B4 5 165 0 1 1554 386 226 58 19 chr5 127080507 127080611 -25456648 - MTD LTR MaLR -44 375 268 1 1554 367 143 0 0 chr5 127080617 127080673 -25456586 + MERVL_2A-int LTR ERVL 4556 4611 -1150 1 1554 708 273 46 42 chr5 127080676 127080936 -25456323 - MTD LTR MaLR -158 261 1 1 1554 705 236 55 15 chr5 127081987 127082189 -25455070 - B3 SINE B2 -2 214 5 1 1554 201 74 0 0 chr5 127082295 127082322 -25454937 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 1554 1218 254 42 27 chr5 127082599 127083008 -25454251 + RMER5 LTR ERV1 115 529 -5 1 1554 296 286 193 0 chr5 127083101 127083220 -25454039 + RSINE1 SINE B4 22 163 -2 1 1554 688 257 25 51 chr5 127083876 127084073 -25453186 - B3A SINE B2 -3 195 4 1 1554 289 231 231 0 chr5 127084073 127084164 -25453095 - PB1D7 SINE Alu -8 112 1 1 1554 474 212 133 0 chr5 127084164 127084228 -25453031 - ID SINE ID -143 81 3 1 1554 2765 267 133 39 chr5 127086113 127087119 -25450140 - Lx8 LINE L1 -5 7468 6368 1 1554 606 308 18 0 chr5 127087597 127087766 -25449493 + B3 SINE B2 40 211 -5 1 1554 1015 130 11 6 chr5 127087777 127087955 -25449304 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 1 1554 357 24 0 0 chr5 127087955 127087997 -25449262 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 1 1554 23 33 0 0 chr5 127088624 127088654 -25448605 + AT_rich Low_complexity Low_complexity 1 30 0 1 1554 616 285 86 66 chr5 127088665 127089059 -25448200 + L1MA8 LINE L1 5548 5949 -342 1 1554 518 280 72 0 chr5 127089065 127089190 -25448069 + RSINE1 SINE B4 15 148 -17 1 1554 685 233 190 9 chr5 127089322 127089554 -25447705 + Lx7 LINE L1 5623 5926 -1547 1 1554 267 54 0 0 chr5 127089561 127089598 -25447661 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1554 244 200 29 0 chr5 127089600 127089670 -25447589 + (TA)n Simple_repeat Simple_repeat 1 72 0 1 1554 527 244 17 8 chr5 127089683 127090045 -25447214 + (TA)n Simple_repeat Simple_repeat 1 365 0 1 1554 956 213 34 19 chr5 127090164 127090370 -25446889 + B3 SINE B2 2 210 -6 1 1554 688 226 156 11 chr5 127090778 127090957 -25446302 - B3 SINE B2 -10 206 2 1 1554 320 0 25 0 chr5 127092001 127092041 -25445218 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1554 731 255 20 30 chr5 127092147 127092345 -25444914 + B3A SINE B2 2 197 -1 1 1554 195 191 0 0 chr5 127092393 127092456 -25444803 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1554 1586 274 31 145 chr5 127093345 127094062 -25443197 + RMER1C Other Other 708 1342 0 1 1554 859 306 14 0 chr5 127094224 127094505 -25442754 - B4 SINE B4 -6 286 2 1 1554 895 257 39 131 chr5 127095010 127095422 -25441837 - MTE2a LTR MaLR -5 374 1 1 1554 318 264 199 51 chr5 127095704 127095860 -25441399 + B3 SINE B2 10 188 -28 1 1554 404 256 0 0 chr5 127096577 127096663 -25440596 + PB1D10 SINE Alu 1 86 -31 1 1554 325 302 118 0 chr5 127096663 127096693 -25440566 + ID_B1 SINE B4 82 211 -13 1 1554 333 0 0 0 chr5 127096755 127096792 -25440467 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1554 243 88 0 0 chr5 127097521 127097555 -25439704 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1 1554 736 191 11 0 chr5 127098401 127098579 -25438680 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1554 362 208 16 50 chr5 127098597 127098779 -25438480 + (TATG)n Simple_repeat Simple_repeat 2 177 0 1 1554 380 259 19 0 chr5 127098784 127099057 -25438202 + (TG)n Simple_repeat Simple_repeat 1 278 0 1 1554 307 322 102 11 chr5 127099176 127099352 -25437907 + L1MEc LINE L1 110 301 -6099 1 1554 271 284 37 0 chr5 127099734 127099815 -25437444 - MLT1B LTR MaLR -234 156 73 1 1554 611 167 7 77 chr5 127100077 127100220 -25437039 + MTD LTR MaLR 273 405 -14 1 1554 907 291 33 4 chr5 127100858 127101134 -25436125 + B4A SINE B4 9 292 0 1 1554 844 283 140 48 chr5 127101174 127101545 -25435714 + MTD LTR MaLR 1 405 -14 1 1554 824 238 11 11 chr5 127101777 127101964 -25435295 + B3 SINE B2 2 188 -28 1 1554 201 340 29 10 chr5 127102613 127102717 -25434542 + L2 LINE L2 2786 2891 -528 2 1554 1144 51 0 0 chr5 127102741 127102878 -25434381 - B1_Mm SINE Alu -10 137 1 2 1554 198 0 0 0 chr5 127103099 127103121 -25434138 + (A)n Simple_repeat Simple_repeat 1 22 0 2 1554 357 375 43 19 chr5 127103941 127104135 -25433124 - LTR55 LTR ERV -231 317 118 2 1554 522 0 0 0 chr5 127104135 127104193 -25433066 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1554 357 375 43 19 chr5 127104193 127104256 -25433003 - LTR55 LTR ERV -431 117 55 2 1554 337 326 0 21 chr5 127104946 127105043 -25432216 - RSINE1 SINE B4 -22 143 49 2 1554 213 65 0 0 chr5 127105356 127105387 -25431872 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1554 1100 148 153 0 chr5 127105548 127105744 -25431515 - URR1A DNA MER1_type 0 226 1 2 1554 425 259 110 20 chr5 127105878 127106024 -25431235 - RSINE1 SINE B4 -2 163 5 2 1554 2011 119 3 42 chr5 127106679 127107012 -25430247 + Lx LINE L1 6330 6649 -5 2 1554 231 88 0 0 chr5 127107020 127107054 -25430205 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2 1554 3395 33 2 8 chr5 127107316 127107714 -25429545 - MTA_Mm LTR MaLR 0 396 1 2 1554 335 319 36 18 chr5 127107775 127107941 -25429318 + MIRb SINE MIR 58 226 -42 2 1554 334 350 6 24 chr5 127108183 127108350 -25428909 - L1M5 LINE L1 -452 5672 5509 2 1554 297 243 23 0 chr5 127109379 127109459 -25427800 + MLT1E3 LTR MaLR 482 573 -80 2 1554 481 138 40 20 chr5 127109576 127109724 -25427535 + (TCTCTG)n Simple_repeat Simple_repeat 2 152 0 2 1554 282 229 0 0 chr5 127110243 127110305 -25426954 - B1F2 SINE Alu -53 64 3 2 1554 1696 155 205 3 chr5 127110348 127110490 -25426769 + RMER10B LTR ERVL 1 192 -206 2 1554 966 111 6 23 chr5 127110490 127110665 -25426594 + (TCTCCC)n Simple_repeat Simple_repeat 3 174 0 2 1554 1696 155 205 3 chr5 127110665 127110853 -25426406 + RMER10B LTR ERVL 193 398 0 2 1554 279 0 0 0 chr5 127111584 127111615 -25425644 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1554 481 285 13 32 chr5 127111825 127111981 -25425278 - Lx7 LINE L1 -384 7312 7160 2 1554 3420 129 61 9 chr5 127112157 127112679 -25424580 - RMER4B LTR ERVK 0 585 46 2 1554 195 42 0 0 chr5 127112679 127112703 -25424556 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1554 3420 129 61 9 chr5 127112703 127112736 -25424523 - RMER4B LTR ERVK -540 45 1 2 1554 426 343 74 19 chr5 127113545 127113928 -25423331 - Lx8 LINE L1 -8 7465 7099 2 1554 285 29 0 0 chr5 127114061 127114095 -25423164 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1554 377 268 108 54 chr5 127114293 127114423 -25422836 - B4 SINE B4 -153 139 3 2 1554 747 264 131 15 chr5 127114607 127114935 -25422324 + MTD LTR MaLR 1 405 -14 2 1554 314 339 0 97 chr5 127115096 127115240 -25422019 + RSINE1 SINE B4 11 140 -25 2 1554 441 0 0 0 chr5 127116631 127116680 -25420579 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1554 1109 82 0 0 chr5 127117022 127117168 -25420091 - B1_Mus2 SINE Alu -1 146 1 2 1554 450 53 0 0 chr5 127117828 127117885 -25419374 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 1554 519 295 128 28 chr5 127119053 127119304 -25417955 + RMER15 LTR ERVL 284 559 -16 2 1554 1064 235 9 0 chr5 127120359 127120572 -25416687 + B3 SINE B2 1 215 -1 2 1554 915 254 14 0 chr5 127121127 127121340 -25415919 - B3 SINE B2 0 216 1 2 1554 274 242 78 39 chr5 127123024 127123127 -25414132 - MLT2B4 LTR ERVL -3 553 447 2 1554 603 309 194 12 chr5 127123515 127123856 -25413403 + Lx9 LINE L1 7208 7610 -34 2 1554 1287 233 157 44 chr5 127123911 127124133 -25413126 + RMER4B LTR ERVK 17 263 -322 2 1554 369 0 0 0 chr5 127124133 127124174 -25413085 + (GGA)n Simple_repeat Simple_repeat 1 41 0 2 1554 1287 233 157 44 chr5 127124174 127124454 -25412805 + RMER4B LTR ERVK 264 576 -9 2 1554 907 214 37 23 chr5 127124462 127124677 -25412582 + MurERV4-int LTR ERVK 9 226 -5034 2 1554 225 131 49 0 chr5 127124722 127124783 -25412476 + GA-rich Low_complexity Low_complexity 4 67 0 2 1554 1392 56 0 0 chr5 127124783 127124961 -25412298 + (GGGAA)n Simple_repeat Simple_repeat 3 180 0 2 1554 306 0 0 0 chr5 127124961 127124995 -25412264 + (GAGAA)n Simple_repeat Simple_repeat 1 34 0 2 1554 297 266 13 0 chr5 127125456 127125535 -25411724 + RSINE1 SINE B4 4 83 -82 2 1554 338 247 0 25 chr5 127125853 127125932 -25411327 + RSINE1 SINE B4 66 142 -23 2 1554 254 143 20 0 chr5 127126257 127126306 -25410953 + CT-rich Low_complexity Low_complexity 3 52 0 2 1554 284 186 39 48 chr5 127126394 127126499 -25410760 + MTEb LTR MaLR 275 379 0 2 1554 438 167 0 0 chr5 127127272 127127356 -25409903 + GA-rich Low_complexity Low_complexity 2 85 0 2 1554 196 30 61 0 chr5 127127431 127127464 -25409795 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1554 1237 34 0 13 chr5 127127466 127127615 -25409644 - B1_Mus1 SINE Alu 0 148 2 2 1554 775 207 21 0 chr5 127128626 127128771 -25408488 + B1_Mur2 SINE Alu 2 149 0 2 1554 193 70 0 65 chr5 127129468 127129514 -25407745 + (TTTTTG)n Simple_repeat Simple_repeat 3 45 0 2 1554 32 0 0 0 chr5 127129655 127129687 -25407572 + AT_rich Low_complexity Low_complexity 1 32 0 2 1554 1193 196 35 0 chr5 127129879 127130109 -25407150 + MTD LTR MaLR 165 402 -17 2 1554 1163 120 49 0 chr5 127130153 127130336 -25406923 + B2_Mm2 SINE B2 1 192 -3 2 1554 417 286 31 6 chr5 127131515 127131677 -25405582 + (TATG)n Simple_repeat Simple_repeat 1 166 0 2 1554 28 36 0 35 chr5 127132090 127132132 -25405127 + AT_rich Low_complexity Low_complexity 1 41 0 2 1554 342 0 0 0 chr5 127132132 127132170 -25405089 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1554 28 36 0 35 chr5 127132170 127132184 -25405075 + AT_rich Low_complexity Low_complexity 1 14 0 2 1554 228 176 144 81 chr5 127132255 127132366 -25404893 + Lx8 LINE L1 7353 7470 -3 2 1554 1276 201 159 9 chr5 127132460 127132786 -25404473 + MTEa LTR MaLR 5 379 0 2 1554 817 181 147 14 chr5 127133348 127133566 -25403693 + RMER4B LTR ERVK 1 247 -338 2 1554 680 200 7 0 chr5 127133580 127133735 -25403524 + GA-rich Low_complexity Low_complexity 3 158 0 2 1554 230 226 0 0 chr5 127133737 127133790 -25403469 + CT-rich Low_complexity Low_complexity 3 55 0 2 1554 454 241 69 37 chr5 127133817 127134020 -25403239 + RMER4B LTR ERVK 332 568 -17 2 1554 1140 81 0 0 chr5 127134449 127134597 -25402662 + B1_Mus1 SINE Alu 1 148 0 2 1554 536 77 0 13 chr5 127134598 127134677 -25402582 + (GAAA)n Simple_repeat Simple_repeat 2 79 0 2 1554 231 36 0 0 chr5 127134879 127134907 -25402352 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 2 1554 902 207 64 0 chr5 127134907 127135095 -25402164 - B3 SINE B2 -16 200 1 2 1554 548 53 13 0 chr5 127135100 127135176 -25402083 + (TC)n Simple_repeat Simple_repeat 2 78 0 2 1554 418 257 82 123 chr5 127135176 127135192 -25402067 - B4 SINE B4 -60 232 219 2 1554 189 0 0 0 chr5 127135192 127135213 -25402046 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 2 1554 973 74 0 0 chr5 127135214 127135349 -25401910 - B1_Mus1 SINE Alu -8 140 6 2 1554 432 156 16 114 chr5 127135241 127135364 -25401895 - MT2B LTR ERVL -337 264 154 2 1554 418 257 82 123 chr5 127135349 127135391 -25401868 - B4 SINE B4 -74 217 46 2 1554 566 63 0 12 chr5 127136387 127136467 -25400792 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 2 1554 462 254 82 35 chr5 127136534 127136565 -25400694 - B3A SINE B2 -9 189 159 2 1554 1332 67 0 0 chr5 127136565 127136745 -25400514 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1554 462 254 82 35 chr5 127136745 127136884 -25400375 - B3A SINE B2 -40 158 11 2 1554 216 0 0 0 chr5 127136887 127136911 -25400348 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2 1554 270 56 0 0 chr5 127136930 127136966 -25400293 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 2 1554 263 282 39 0 chr5 127138059 127138137 -25399122 + ID4_ SINE ID 3 83 0 2 1554 449 227 109 0 chr5 127138693 127138803 -25398456 + Lx8 LINE L1 6694 6815 -658 2 1554 620 233 89 53 chr5 127138819 127138907 -25398352 + Lx8 LINE L1 7042 7125 -348 2 1554 482 259 199 38 chr5 127138907 127139224 -25398035 + RLTR9A LTR ERVK 1 368 0 2 1554 620 233 89 53 chr5 127139224 127139325 -25397934 + Lx8 LINE L1 7126 7238 -235 2 1554 218 221 0 29 chr5 127139456 127139488 -25397771 + polypurine Low_complexity Low_complexity 3 34 0 2 1554 1021 133 0 16 chr5 127139488 127139671 -25397588 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 1554 218 221 0 29 chr5 127139671 127139708 -25397551 + polypurine Low_complexity Low_complexity 35 70 0 2 1555 1434 70 0 31 chr5 127139856 127140047 -25397212 + B2_Mm1t SINE B2 2 186 -7 2 1555 1239 177 146 0 chr5 127140284 127140572 -25396687 + MTD LTR MaLR 76 405 -14 2 1555 238 233 54 14 chr5 127141730 127141804 -25395455 + L1MD LINE L1 2900 2976 -3170 2 1555 760 251 157 14 chr5 127141850 127142137 -25395122 + L1MA6 LINE L1 5446 5773 -527 2 1555 270 274 143 16 chr5 127142293 127142346 -25394913 + L1MA6 LINE L1 6087 6142 -158 2 1555 1341 229 101 6 chr5 127142346 127142684 -25394575 - ORR1D2 LTR MaLR 0 370 1 2 1555 270 274 143 16 chr5 127142684 127142819 -25394440 + L1MA6 LINE L1 6143 6299 -1 2 1555 232 220 16 33 chr5 127142827 127142888 -25394371 + L1M4 LINE L1 4040 4099 -2047 2 1555 505 255 62 44 chr5 127143159 127143319 -25393940 - B3A SINE B2 -13 185 23 2 1555 28 48 0 0 chr5 127143492 127143534 -25393725 + AT_rich Low_complexity Low_complexity 1 42 0 2 1555 718 221 0 41 chr5 127144576 127144722 -25392537 - B1_Mur1 SINE Alu -7 142 3 2 1555 1045 215 20 0 chr5 127144738 127144938 -25392321 - B3 SINE B2 -12 204 1 2 1555 1144 218 138 14 chr5 127144969 127145332 -25391927 + MTD LTR MaLR 12 419 0 2 1555 519 31 0 0 chr5 127145534 127145599 -25391660 + (TC)n Simple_repeat Simple_repeat 1 65 0 2 1555 276 53 0 0 chr5 127145599 127145636 -25391623 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1555 376 144 44 32 chr5 127145698 127145856 -25391403 + (CACAA)n Simple_repeat Simple_repeat 1 160 0 2 1555 1259 171 9 0 chr5 127145976 127146187 -25391072 - Lx9 LINE L1 -167 7477 7265 2 1555 478 269 50 75 chr5 127146397 127146598 -25390661 + B3 SINE B2 4 199 -17 2 1555 634 324 17 43 chr5 127148116 127148416 -25388843 - B4A SINE B4 0 292 1 2 1555 991 286 90 24 chr5 127148650 127148983 -25388276 - ORR1E LTR MaLR 0 359 5 2 1555 811 209 9 71 chr5 127149556 127149767 -25387492 - MTE2b LTR MaLR -11 368 171 2 1555 370 277 109 58 chr5 127150022 127150160 -25387099 - B3 SINE B2 0 216 72 3 1555 330 196 33 0 chr5 127150274 127150355 -25386904 + Lx7 LINE L1 7039 7133 -340 3 1555 1890 116 14 109 chr5 127150369 127150737 -25386522 - ORR1A1 LTR MaLR -8 338 6 3 1555 1648 16 5 16 chr5 127150766 127150958 -25386301 - B2_Mm1t SINE B2 -3 190 1 3 1555 278 347 11 0 chr5 127150994 127151089 -25386170 + Lx7 LINE L1 7205 7300 -396 3 1555 341 43 21 0 chr5 127151102 127151149 -25386110 + (TTTTG)n Simple_repeat Simple_repeat 1 48 0 3 1555 263 202 157 29 chr5 127151159 127151261 -25385998 + Lx7 LINE L1 7353 7467 -6 3 1555 633 291 32 48 chr5 127151660 127151848 -25385411 - B3A SINE B2 -2 196 12 3 1555 216 0 0 0 chr5 127152320 127152344 -25384915 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1555 5400 82 4 6 chr5 127152627 127153347 -25383912 + L1Md_F2 LINE L1 5864 6582 0 3 1555 571 193 59 0 chr5 127153789 127153908 -25383351 + B2_Mm2 SINE B2 4 129 -66 3 1555 597 162 111 0 chr5 127154024 127154141 -25383118 - B1_Mur2 SINE Alu -11 138 9 3 1555 289 270 0 65 chr5 127154052 127154159 -25383100 - MT2B LTR ERVL -345 256 157 3 1555 6614 76 9 7 chr5 127154844 127156421 -25380838 - L1VL4 LINE L1 -1758 1801 223 3 1555 312 214 131 10 chr5 127156782 127156881 -25380378 - L1MA7 LINE L1 -211 6080 5970 3 1555 2640 91 121 18 chr5 127157224 127157614 -25379645 + RLTR23 LTR ERV1 1 430 0 3 1555 845 257 107 44 chr5 127158000 127158318 -25378941 - MTD LTR MaLR -64 355 18 3 1555 472 303 38 27 chr5 127158688 127158871 -25378388 - B3A SINE B2 -13 185 1 3 1555 221 159 0 0 chr5 127159135 127159179 -25378080 + T-rich Low_complexity Low_complexity 1 44 0 3 1555 1189 61 0 20 chr5 127159179 127159329 -25377930 - B1_Mus2 SINE Alu 0 147 1 3 1555 223 274 65 0 chr5 127159386 127159448 -25377811 + ID SINE ID 6 71 -153 3 1555 316 279 202 18 chr5 127159933 127160101 -25377158 + Lx8 LINE L1 7249 7447 -26 3 1555 207 88 0 0 chr5 127160221 127160255 -25377004 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1555 180 294 0 0 chr5 127161627 127161695 -25375564 + GA-rich Low_complexity Low_complexity 3 70 0 3 1555 1052 201 27 14 chr5 127162538 127162760 -25374499 + Lx9 LINE L1 7215 7439 -205 3 1555 774 83 118 22 chr5 127162761 127162896 -25374363 + B1_Mus1 SINE Alu 1 148 0 3 1555 267 56 18 36 chr5 127162896 127162952 -25374307 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 3 1555 625 289 92 10 chr5 127162979 127163185 -25374074 - B4 SINE B4 -68 224 2 3 1555 251 277 34 51 chr5 127164438 127164556 -25372703 + MLT1A0 LTR MaLR 47 162 -203 3 1555 21 0 0 0 chr5 127165565 127165586 -25371673 + AT_rich Low_complexity Low_complexity 1 21 0 3 1555 476 338 14 0 chr5 127166146 127166285 -25370974 + RSINE1 SINE B4 1 141 -24 3 1555 225 0 0 0 chr5 127166303 127166328 -25370931 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3 1555 317 339 52 23 chr5 127166414 127166586 -25370673 - L1MB5 LINE L1 -71 6103 5927 3 1555 760 279 34 129 chr5 127166586 127166819 -25370440 - MTD LTR MaLR -14 405 202 3 1555 450 94 0 0 chr5 127166819 127166883 -25370376 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1555 912 268 38 134 chr5 127166883 127167097 -25370162 - MTD LTR MaLR -219 200 1 3 1555 297 0 0 0 chr5 127167240 127167273 -25369986 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1555 344 333 0 11 chr5 127167278 127167366 -25369893 - B3A SINE B2 -77 121 35 3 1555 22 0 0 0 chr5 127167577 127167599 -25369660 + AT_rich Low_complexity Low_complexity 1 22 0 3 1555 956 183 66 47 chr5 127167687 127167741 -25369518 + B3 SINE B2 1 51 -165 3 1555 5032 78 15 50 chr5 127167741 127168519 -25368740 - RMER17A LTR ERVK 0 751 1 3 1555 956 183 66 47 chr5 127168519 127168676 -25368583 + B3 SINE B2 52 216 0 3 1555 26 0 0 0 chr5 127168873 127168899 -25368360 + AT_rich Low_complexity Low_complexity 1 26 0 3 1555 450 0 0 0 chr5 127168953 127169003 -25368256 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1555 225 65 0 0 chr5 127169012 127169043 -25368216 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3 1555 698 158 6 0 chr5 127169043 127169204 -25368055 + GA-rich Low_complexity Low_complexity 10 171 0 3 1555 1522 194 149 82 chr5 127169205 127169549 -25367710 - RLTR20B3 LTR ERVK -91 486 119 3 1555 2735 42 12 0 chr5 127169549 127169884 -25367375 - L1Md_F2 LINE L1 -2 6580 6242 3 1555 1522 194 149 82 chr5 127169884 127169988 -25367271 - RLTR20B3 LTR ERVK -459 118 9 3 1555 298 262 12 48 chr5 127170226 127170310 -25366949 + RSINE1 SINE B4 44 124 -41 3 1555 1360 267 79 21 chr5 127170318 127170697 -25366562 - MTD LTR MaLR -15 404 4 3 1555 486 0 0 0 chr5 127172094 127172148 -25365111 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1555 399 307 60 12 chr5 127172488 127172656 -25364603 + MLT1L LTR MaLR 306 481 -129 3 1555 583 262 20 7 chr5 127172892 127173038 -25364221 - RMER5 LTR ERV1 0 534 387 3 1555 4437 122 42 18 chr5 127173040 127173752 -25363507 + Lx4A LINE L1 6330 7058 0 3 1555 239 308 120 67 chr5 127173753 127174094 -25363165 - RMER17C LTR ERVK -17 393 35 3 1555 1020 269 70 15 chr5 127174166 127174494 -25362765 - RMER5 LTR ERV1 -156 378 33 3 1555 1087 65 0 0 chr5 127175867 127176005 -25361254 + B1_Mm SINE Alu 1 138 -9 3 1555 259 264 156 34 chr5 127176329 127176454 -25360805 - MIR SINE MIR -55 153 19 3 1555 371 238 0 12 chr5 127176921 127177006 -25360253 + HAL1-2a_MD LINE L1 2354 2437 -587 3 1555 675 236 5 48 chr5 127177013 127177200 -25360059 + HAL1-2a_MD LINE L1 2347 2525 -499 3 1555 362 289 99 50 chr5 127178510 127178732 -25358527 + L1ME3A LINE L1 5939 6171 -2 3 1555 243 204 20 0 chr5 127178943 127178992 -25358267 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 3 1555 651 225 117 40 chr5 127180557 127180828 -25356431 - RMER15 LTR ERVL -174 401 1 3 1555 218 345 33 44 chr5 127180828 127180919 -25356340 - B1F SINE Alu -59 90 1 3 1555 185 83 28 0 chr5 127181603 127181639 -25355620 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 1555 257 183 117 0 chr5 127181725 127181785 -25355474 + MTEb LTR MaLR 295 361 -18 3 1555 198 118 0 0 chr5 127181785 127181819 -25355440 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1555 330 87 0 0 chr5 127181832 127181878 -25355381 + (ATG)n Simple_repeat Simple_repeat 2 47 0 3 1555 453 340 86 30 chr5 127182397 127182594 -25354665 + MTEb LTR MaLR 1 208 -171 3 1555 252 0 0 0 chr5 127182844 127182872 -25354387 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1555 1706 197 105 65 chr5 127183242 127183746 -25353513 + RLTR11A LTR ERVK 1 524 -4 3 1555 189 0 0 0 chr5 127184646 127184667 -25352592 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1555 346 346 0 45 chr5 127184724 127184857 -25352402 - B4A SINE B4 -86 206 80 3 1555 1723 228 37 9 chr5 127184891 127185240 -25352019 + ORR1D2 LTR MaLR 11 369 -1 3 1555 225 0 0 0 chr5 127185996 127186021 -25351238 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 1555 532 265 58 14 chr5 127186670 127186808 -25350451 - ID_B1 SINE B4 -1 223 80 3 1555 594 168 22 0 chr5 127187717 127187854 -25349405 + (TA)n Simple_repeat Simple_repeat 2 141 0 3 1555 1255 133 34 19 chr5 127188741 127188948 -25348311 - B3 SINE B2 -6 210 1 3 1555 300 327 99 26 chr5 127188961 127189112 -25348147 + L1M5 LINE L1 3043 3204 -2942 3 1555 229 338 52 15 chr5 127189357 127189492 -25347767 - MLT1L LTR MaLR -125 485 346 3 1555 947 289 4 64 chr5 127189980 127190246 -25347013 - B4 SINE B4 0 292 43 3 1555 1501 204 88 7 chr5 127190252 127190558 -25346701 + MTD LTR MaLR 1 331 -88 3 1555 347 302 141 16 chr5 127191045 127191166 -25346093 + RSINE1 SINE B4 30 165 0 3 1555 236 100 25 0 chr5 127191168 127191208 -25346051 + (TAAG)n Simple_repeat Simple_repeat 2 42 0 3 1555 345 214 0 0 chr5 127191325 127191423 -25345836 + CT-rich Low_complexity Low_complexity 1 98 0 3 1555 290 301 60 53 chr5 127191475 127191626 -25345633 + MER113 DNA MER1_type 1 152 -369 3 1555 448 327 92 35 chr5 127191752 127191944 -25345315 + MLT1A LTR MaLR 134 341 -33 3 1555 1444 197 154 42 chr5 127191944 127192321 -25344938 + MTD LTR MaLR 1 419 0 3 1555 448 327 92 35 chr5 127192321 127192356 -25344903 + MLT1A LTR MaLR 342 374 0 3 1555 995 235 9 32 chr5 127192802 127193022 -25344237 - B3 SINE B2 0 216 2 3 1555 3171 63 5 2 chr5 127193570 127193969 -25343290 + MTB LTR MaLR 1 400 0 3 1555 1708 239 60 43 chr5 127195458 127195589 -25341670 + RLTR20B1 LTR ERVK 89 218 -345 3 1555 714 82 0 0 chr5 127195589 127195687 -25341572 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 3 1555 1708 239 60 43 chr5 127195687 127196022 -25341237 + RLTR20B1 LTR ERVK 219 563 0 3 1555 732 299 134 70 chr5 127196061 127196673 -25340586 + L1MC1 LINE L1 5378 6028 -305 3 1555 602 245 25 13 chr5 127196679 127196836 -25340423 + B4 SINE B4 1 159 -133 3 1555 2070 174 11 18 chr5 127196872 127197253 -25340006 - ORR1C1 LTR MaLR 0 378 1 3 1555 255 211 0 0 chr5 127197299 127197389 -25339870 + GA-rich Low_complexity Low_complexity 1 90 0 3 1555 394 344 108 10 chr5 127197389 127197686 -25339573 + L1MC1 LINE L1 5996 6321 -12 3 1555 833 148 6 33 chr5 127198000 127198182 -25339077 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 3 1555 214 138 62 0 chr5 127198206 127198271 -25338988 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 3 1555 255 238 38 38 chr5 127198272 127198429 -25338830 + (TAGA)n Simple_repeat Simple_repeat 2 158 0 3 1555 592 217 222 6 chr5 127198665 127198827 -25338432 - URR1A DNA MER1_type -29 197 1 3 1555 845 196 113 0 chr5 127198866 127199060 -25338199 + B3 SINE B2 1 216 0 3 1555 630 219 0 0 chr5 127199137 127199251 -25338008 - PB1D9 SINE Alu -5 115 2 3 1555 1826 279 49 108 chr5 127199705 127200536 -25336723 + RCHARR1 DNA MER1_type 2 783 -191 3 1555 212 122 41 0 chr5 127200545 127200594 -25336665 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 4 1555 33 0 0 0 chr5 127201555 127201588 -25335671 + AT_rich Low_complexity Low_complexity 1 33 0 4 1555 311 228 123 64 chr5 127201588 127201808 -25335451 - Lx9 LINE L1 -4 7640 7408 4 1555 1715 126 118 14 chr5 127201836 127202125 -25335134 - ORR1A2 LTR MaLR -8 319 1 4 1555 730 268 201 3 chr5 127202145 127202480 -25334779 - Lx9 LINE L1 -272 7372 6972 4 1555 563 248 19 45 chr5 127202968 127203124 -25334135 - MTEb LTR MaLR -30 349 198 4 1555 584 164 6 39 chr5 127203125 127203303 -25333956 + GA-rich Low_complexity Low_complexity 5 176 0 4 1555 385 191 28 39 chr5 127203324 127203504 -25333755 + GA-rich Low_complexity Low_complexity 3 180 0 4 1555 1185 179 9 23 chr5 127203505 127203722 -25333537 - MTEb LTR MaLR -164 215 2 4 1555 213 350 57 57 chr5 127203907 127204031 -25333228 + L2b LINE L2 3245 3368 -7 4 1555 471 132 0 0 chr5 127204127 127204195 -25333064 - RLTR28 LTR ERVL -456 68 1 4 1555 245 360 40 60 chr5 127204270 127204471 -25332788 + MER57C2 LTR ERV1 182 378 -56 4 1555 473 284 0 7 chr5 127205276 127205572 -25331687 + (CA)n Simple_repeat Simple_repeat 1 293 0 4 1555 457 287 169 17 chr5 127205578 127205755 -25331504 - RMER15 LTR ERVL -93 482 279 4 1555 373 368 6 31 chr5 127206595 127206755 -25330504 - MER58A DNA MER1_type -68 156 1 4 1555 256 217 0 0 chr5 127206936 127206982 -25330277 + PB1D10 SINE Alu 64 109 -8 4 1555 360 264 0 0 chr5 127206997 127207084 -25330175 + BC1_Mm scRNA scRNA 2 88 -64 4 1555 342 321 0 84 chr5 127207570 127207689 -25329570 + MTEa LTR MaLR 1 109 -270 4 1555 1923 216 37 10 chr5 127207890 127208292 -25328967 + MTD LTR MaLR 6 418 -1 4 1555 182 62 31 0 chr5 127208430 127208462 -25328797 + (CCCCCA)n Simple_repeat Simple_repeat 2 34 0 4 1555 335 308 20 27 chr5 127208572 127208719 -25328540 + L2a LINE L2 3203 3348 -78 4 1555 2231 143 20 58 chr5 127209477 127209870 -25327389 - ORR1C1 LTR MaLR 0 378 1 4 1555 372 342 8 0 chr5 127209903 127210020 -25327239 - RMER15 LTR ERVL -55 520 403 4 1555 891 240 60 5 chr5 127210735 127210775 -25326484 - B3 SINE B2 -4 212 170 4 1555 387 0 0 0 chr5 127210775 127210818 -25326441 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1555 891 240 60 5 chr5 127210818 127210978 -25326281 - B3 SINE B2 -47 169 1 4 1555 471 271 115 0 chr5 127211220 127211342 -25325917 - RSINE1 SINE B4 -18 147 12 4 1555 410 301 19 37 chr5 127211742 127211904 -25325355 + RSINE1 SINE B4 2 160 -5 4 1555 251 54 27 0 chr5 127212270 127212307 -25324952 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 4 1555 865 240 28 42 chr5 127212600 127212813 -25324446 - B3 SINE B2 -5 211 2 4 1555 245 277 175 19 chr5 127212919 127213022 -25324237 - Lx8 LINE L1 -150 7323 7205 4 1555 887 250 23 0 chr5 127213218 127213434 -25323825 + L1MA6 LINE L1 5547 5767 -524 4 1555 405 0 0 0 chr5 127213437 127213482 -25323777 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1555 249 151 0 0 chr5 127214172 127214225 -25323034 + G-rich Low_complexity Low_complexity 1 53 0 4 1555 268 247 34 45 chr5 127214282 127214371 -25322888 + L1MA6 LINE L1 5847 5934 -366 4 1555 369 0 0 0 chr5 127214388 127214429 -25322830 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1555 317 252 162 0 chr5 127214808 127214907 -25322352 + Lx8 LINE L1 7155 7269 -204 4 1555 693 231 21 18 chr5 127216203 127216376 -25320883 + B3A SINE B2 41 216 0 4 1555 318 215 62 31 chr5 127216453 127216549 -25320710 - L1MD LINE L1 -1040 5106 5008 4 1555 36 0 0 0 chr5 127216838 127216874 -25320385 + AT_rich Low_complexity Low_complexity 1 36 0 4 1555 531 324 80 38 chr5 127216936 127217199 -25320060 + B4A SINE B4 7 280 -12 4 1555 408 325 24 30 chr5 127217429 127217594 -25319665 - LTR75 LTR ERVL -62 500 337 4 1555 349 214 81 23 chr5 127217931 127218017 -25319242 - BC1_Mm scRNA scRNA -61 91 1 4 1555 195 42 0 0 chr5 127218037 127218061 -25319198 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 1555 1122 118 0 0 chr5 127218061 127218222 -25319037 - B2_Mm2 SINE B2 -33 162 2 4 1555 266 328 69 83 chr5 127219243 127219459 -25317800 + MER68 LTR ERVL 53 265 -298 4 1555 245 254 17 42 chr5 127219472 127219712 -25317547 + GA-rich Low_complexity Low_complexity 1 233 0 4 1555 181 345 49 98 chr5 127220124 127220246 -25317013 + MIR3 SINE MIR 44 159 -49 4 1555 252 167 27 14 chr5 127220434 127220507 -25316752 + GA-rich Low_complexity Low_complexity 4 77 0 4 1555 314 255 85 0 chr5 127221603 127221697 -25315562 + MER20 DNA MER1_type 1 102 -117 4 1555 262 208 206 10 chr5 127222434 127222531 -25314728 - MTEb LTR MaLR 0 379 264 4 1555 238 329 97 13 chr5 127223025 127223179 -25314080 - MLT1E LTR MaLR -380 273 107 4 1555 232 250 129 47 chr5 127223291 127223547 -25313712 + L1MEc LINE L1 620 896 -5504 4 1555 212 329 0 76 chr5 127223554 127223633 -25313626 + PB1D10 SINE Alu 1 73 -44 4 1555 834 130 11 22 chr5 127223679 127223860 -25313399 + GA-rich Low_complexity Low_complexity 1 179 0 4 1555 909 137 6 12 chr5 127223872 127224042 -25313217 + GA-rich Low_complexity Low_complexity 3 171 0 4 1555 419 216 149 39 chr5 127224408 127224615 -25312644 + MTD LTR MaLR 127 404 -15 4 1555 1326 175 163 34 chr5 127225335 127225661 -25311598 - ORR1D2 LTR MaLR 0 370 3 4 1555 782 113 0 8 chr5 127226145 127226270 -25310989 + (TTCC)n Simple_repeat Simple_repeat 2 125 0 4 1555 1155 93 32 16 chr5 127226286 127226471 -25310788 - B2_Mm2 SINE B2 0 195 8 4 1555 239 120 0 39 chr5 127226472 127226508 -25310751 + T-rich Low_complexity Low_complexity 17 50 0 4 1555 1132 101 0 0 chr5 127226508 127226656 -25310603 - B1_Mus1 SINE Alu 0 148 1 4 1555 239 120 0 39 chr5 127226656 127226671 -25310588 + T-rich Low_complexity Low_complexity 2 16 0 4 1555 1308 168 158 26 chr5 127226671 127226796 -25310463 - Lx9 LINE L1 -25 7619 7477 4 1555 243 0 0 0 chr5 127226796 127226823 -25310436 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1555 504 0 0 0 chr5 127226823 127226878 -25310381 + (TA)n Simple_repeat Simple_repeat 2 57 0 4 1555 1308 168 158 26 chr5 127226878 127226910 -25310349 - Lx9 LINE L1 -168 7476 7423 4 1555 297 0 0 0 chr5 127226910 127226943 -25310316 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1555 1308 168 158 26 chr5 127226943 127227094 -25310165 - Lx9 LINE L1 -222 7422 7270 4 1555 2408 142 90 3 chr5 127227094 127227482 -25309777 + Lx9 LINE L1 6849 7270 -374 4 1555 1058 179 29 5 chr5 127227526 127227734 -25309525 + URR1B DNA MER1_type 13 225 0 4 1555 780 281 26 0 chr5 127228919 127229082 -25308177 + B3A SINE B2 1 164 -34 4 1555 249 33 0 0 chr5 127229082 127229112 -25308147 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1555 780 281 26 0 chr5 127229112 127229140 -25308119 + B3A SINE B2 165 196 -2 4 1555 721 194 22 0 chr5 127229145 127229279 -25307980 + B1_Mur3 SINE Alu 3 139 -10 4 1555 231 193 42 34 chr5 127229279 127229397 -25307862 + (TATAA)n Simple_repeat Simple_repeat 3 121 0 4 1555 24 32 0 0 chr5 127229397 127229428 -25307831 + AT_rich Low_complexity Low_complexity 1 31 0 4 1555 526 187 24 31 chr5 127229983 127230110 -25307149 + B3A SINE B2 2 127 -71 4 1555 215 313 0 29 chr5 127230105 127230122 -25307137 + ID_B1 SINE B4 72 135 -86 4 1555 253 224 0 0 chr5 127230122 127230171 -25307088 + PB1D9 SINE Alu 6 54 -66 4 1555 377 287 0 0 chr5 127230176 127230298 -25306961 + G-rich Low_complexity Low_complexity 1 122 0 4 1555 210 59 77 19 chr5 127230298 127230350 -25306909 + (CAGG)n Simple_repeat Simple_repeat 2 56 0 4 1555 642 132 0 38 chr5 127230353 127230510 -25306749 + (CAGAGA)n Simple_repeat Simple_repeat 2 152 0 4 1555 454 155 36 0 chr5 127230510 127230594 -25306665 + B1F2 SINE Alu 42 128 -21 4 1555 278 244 102 39 chr5 127230748 127230876 -25306383 - L2a LINE L2 -33 3393 3258 4 1555 325 171 37 0 chr5 127231465 127231547 -25305712 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 4 1555 4136 120 89 42 chr5 127231549 127232271 -25304988 - RMER6A LTR ERVK 0 756 1 4 1555 493 267 0 94 chr5 127232846 127232995 -25304264 - B1_Mur1 SINE Alu -13 136 2 4 1555 319 191 0 0 chr5 127233695 127233758 -25303501 - B4 SINE B4 -66 226 164 4 1555 411 333 25 0 chr5 127233753 127233912 -25303347 + RMER5 LTR ERV1 361 523 -11 4 1555 865 175 69 51 chr5 127234630 127234847 -25302412 - URR1A DNA MER1_type 0 226 6 4 1555 274 262 0 56 chr5 127235295 127235384 -25301875 - B4A SINE B4 -165 127 44 4 1555 572 283 65 22 chr5 127235567 127235882 -25301377 - MER67D LTR ERV1 -375 336 3 4 1555 1395 173 72 91 chr5 127236492 127236855 -25300404 + RLTR41 LTR ERV1 91 446 0 4 1555 819 238 149 13 chr5 127236995 127237233 -25300026 - RMER17C LTR ERVK -51 359 80 4 1555 443 18 0 18 chr5 127237233 127237290 -25299969 + (GA)n Simple_repeat Simple_repeat 1 56 0 4 1555 819 238 149 13 chr5 127237290 127237353 -25299906 - RMER17C LTR ERVK -331 79 17 4 1555 944 148 22 51 chr5 127237353 127237531 -25299728 - RMER17C-int LTR ERVK -8 3230 3058 4 1555 874 154 23 0 chr5 127237531 127237706 -25299553 + CT-rich Low_complexity Low_complexity 2 180 0 4 1555 316 157 105 29 chr5 127237951 127238056 -25299203 - Lx8 LINE L1 -1 7472 7360 4 1555 1452 224 126 46 chr5 127238160 127238246 -25299013 - Lx7 LINE L1 -345 7351 7268 4 1555 2048 175 49 5 chr5 127238246 127238636 -25298623 + MTB_Mm LTR MaLR 1 407 0 4 1555 1452 224 126 46 chr5 127238636 127239002 -25298257 - Lx7 LINE L1 -429 7267 6863 4 1555 526 198 0 0 chr5 127239013 127239104 -25298155 - B1_Mur1 SINE Alu -15 134 44 4 1555 929 203 43 0 chr5 127241055 127241242 -25296017 + B3 SINE B2 7 201 -15 4 1555 732 194 21 7 chr5 127242619 127242759 -25294500 + B1_Mur1 SINE Alu 1 142 -7 4 1555 5674 126 66 10 chr5 127243083 127243481 -25293778 + RMER17B LTR ERVK 1 399 -559 4 1555 287 105 18 0 chr5 127243481 127243538 -25293721 + (TCTG)n Simple_repeat Simple_repeat 2 59 0 4 1555 5674 126 66 10 chr5 127243538 127244046 -25293213 + RMER17B LTR ERVK 400 957 -1 4 1555 336 24 0 0 chr5 127245221 127245262 -25291997 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1555 469 201 18 127 chr5 127246206 127246217 -25291042 - B1_Mus2 SINE Alu 0 147 138 4 1555 426 20 0 0 chr5 127246217 127246268 -25290991 + (TTA)n Simple_repeat Simple_repeat 2 52 0 4 1555 469 201 18 127 chr5 127246268 127246421 -25290838 - B1_Mus2 SINE Alu -10 137 1 4 1555 186 317 17 0 chr5 127246808 127246868 -25290391 - L2b LINE L2 -50 3325 3265 4 1555 546 188 0 0 chr5 127247314 127247484 -25289775 + (TAGA)n Simple_repeat Simple_repeat 1 170 0 4 1555 387 321 32 6 chr5 127247734 127247891 -25289368 - MT2A LTR ERVL -71 462 302 4 1555 224 59 29 0 chr5 127248022 127248056 -25289203 + (TA)n Simple_repeat Simple_repeat 2 36 0 5 1555 367 328 48 27 chr5 127248367 127248555 -25288704 - L1MD2 LINE L1 -382 5977 5786 5 1555 1232 212 122 15 chr5 127248688 127249081 -25288178 - RMER10A LTR ERVL 0 442 8 5 1555 403 255 258 13 chr5 127249181 127249332 -25287927 - B3A SINE B2 -7 191 4 5 1555 2740 117 15 15 chr5 127250825 127251301 -25285958 - RLTR28 LTR ERVL -14 510 35 5 1555 447 236 121 73 chr5 127252106 127252312 -25284947 - B3 SINE B2 0 216 1 5 1555 402 275 49 16 chr5 127252605 127252727 -25284532 + RMER15 LTR ERVL 296 421 -154 5 1555 321 269 115 0 chr5 127253824 127253928 -25283331 - L1MA9 LINE L1 -449 5863 5748 5 1555 493 212 74 127 chr5 127254195 127254361 -25282898 + B3 SINE B2 2 159 -36 5 1555 476 72 14 0 chr5 127254361 127254430 -25282829 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1555 368 212 74 127 chr5 127254430 127254452 -25282807 + B2_Mm2 SINE B2 160 180 -15 5 1555 1096 199 11 225 chr5 127255008 127255474 -25281785 + ORR1D2 LTR MaLR 5 370 0 5 1555 359 339 106 13 chr5 127255728 127255955 -25281304 + MLT1C LTR MaLR 204 451 -16 5 1555 214 50 50 0 chr5 127256265 127256305 -25280954 + (TTTTG)n Simple_repeat Simple_repeat 5 46 0 5 1555 375 41 0 0 chr5 127256375 127256424 -25280835 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 5 1555 306 0 0 0 chr5 127256448 127256482 -25280777 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1555 402 246 61 8 chr5 127256868 127256999 -25280260 - MLT1B LTR MaLR -71 319 182 5 1555 234 245 35 14 chr5 127257005 127257146 -25280113 + (TATATG)n Simple_repeat Simple_repeat 5 148 0 5 1555 473 193 29 29 chr5 127257221 127257392 -25279867 + (TATATG)n Simple_repeat Simple_repeat 6 176 0 5 1555 255 211 34 39 chr5 127257436 127257614 -25279645 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 5 1555 364 226 32 0 chr5 127257664 127257819 -25279440 + (TG)n Simple_repeat Simple_repeat 1 160 0 5 1555 354 221 71 32 chr5 127257819 127257945 -25279314 - MLT1B LTR MaLR -195 195 65 5 1555 236 250 31 0 chr5 127258669 127258733 -25278526 + (CATA)n Simple_repeat Simple_repeat 4 69 0 5 1555 933 244 51 21 chr5 127258739 127258974 -25278285 + Lx6 LINE L1 7216 7457 -3 5 1555 278 350 32 91 chr5 127259148 127259302 -25277957 - B4A SINE B4 -122 170 26 5 1555 290 161 58 0 chr5 127259916 127260003 -25277256 + (TATATG)n Simple_repeat Simple_repeat 1 92 0 5 1555 660 230 135 22 chr5 127260246 127260424 -25276835 - B3 SINE B2 -18 198 1 5 1555 16115 30 25 2 chr5 127260443 127263043 -25274216 - L1Md_F2 LINE L1 -1 6581 3924 5 1555 259 239 42 14 chr5 127263128 127263200 -25274059 + LTR33C LTR ERVL 10 83 -546 5 1555 900 226 9 51 chr5 127264326 127264363 -25272896 - B3 SINE B2 -5 211 181 5 1555 1862 203 32 45 chr5 127264363 127264806 -25272453 - BGLII_B LTR ERVK 0 441 5 5 1555 900 226 9 51 chr5 127264806 127264983 -25272276 - B3 SINE B2 -36 180 6 5 1555 487 315 120 0 chr5 127265123 127265307 -25271952 + Lx8 LINE L1 6637 6842 -631 5 1555 559 233 30 15 chr5 127265657 127265788 -25271471 + Lx8 LINE L1 6824 6956 -517 5 1555 267 188 35 18 chr5 127265857 127265971 -25271288 + (CA)n Simple_repeat Simple_repeat 1 116 0 5 1555 472 165 16 33 chr5 127266004 127266186 -25271073 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1555 337 191 25 25 chr5 127266205 127266453 -25270806 + (CA)n Simple_repeat Simple_repeat 1 248 0 5 1555 270 274 175 18 chr5 127266496 127266667 -25270592 + Lx8 LINE L1 6970 7167 -306 5 1555 299 280 211 21 chr5 127266827 127267017 -25270242 - MLT1D LTR MaLR -7 498 273 5 1555 243 0 0 0 chr5 127267034 127267061 -25270198 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1555 2168 216 96 33 chr5 127267218 127267759 -25269500 - RMER15 LTR ERVL 0 575 1 5 1555 1420 22 0 11 chr5 127269554 127269736 -25267523 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1555 862 164 6 17 chr5 127269739 127269919 -25267340 + CT-rich Low_complexity Low_complexity 3 180 0 5 1555 1304 185 0 0 chr5 127270092 127270297 -25266962 - B3 SINE B2 -10 206 2 5 1555 243 0 0 0 chr5 127270768 127270795 -25266464 + (TG)n Simple_repeat Simple_repeat 1 27 0 5 1555 666 25 0 0 chr5 127270795 127270874 -25266385 + (GA)n Simple_repeat Simple_repeat 1 80 0 5 1556 296 159 0 45 chr5 127271160 127271226 -25266033 - MTE2b LTR MaLR -10 369 307 5 1556 1443 60 38 0 chr5 127271246 127271429 -25265830 - B2_Mm2 SINE B2 -4 191 2 5 1556 663 283 43 28 chr5 127271442 127271653 -25265606 - B3 SINE B2 0 216 3 5 1556 980 288 56 10 chr5 127271654 127271956 -25265303 - MTE2b LTR MaLR -60 319 4 5 1556 320 251 84 8 chr5 127271981 127272123 -25265136 - L1M5 LINE L1 -2167 5828 5672 5 1556 373 200 31 31 chr5 127272267 127272365 -25264894 + ID_B1 SINE B4 126 223 -1 5 1556 297 18 70 35 chr5 127273286 127273343 -25263916 + (TCTCTG)n Simple_repeat Simple_repeat 1 59 0 5 1556 459 257 0 87 chr5 127273343 127273452 -25263807 - B1F1 SINE Alu -13 136 37 5 1556 894 193 23 0 chr5 127273524 127273695 -25263564 - B3 SINE B2 -11 205 31 5 1556 1128 279 46 32 chr5 127274340 127274774 -25262485 - BGLII_B LTR ERVK -1 440 1 5 1556 261 0 0 0 chr5 127275172 127275201 -25262058 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1556 1415 223 43 69 chr5 127275203 127275282 -25261977 + MTD LTR MaLR 8 80 -339 5 1556 787 197 0 0 chr5 127275282 127275419 -25261840 + B1_Mur4 SINE Alu 1 137 -13 5 1556 279 0 0 0 chr5 127275419 127275450 -25261809 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 5 1556 1415 223 43 69 chr5 127275450 127275792 -25261467 + MTD LTR MaLR 81 418 -1 5 1556 52 58 0 0 chr5 127276855 127276942 -25260317 + AT_rich Low_complexity Low_complexity 1 87 0 5 1556 575 253 131 12 chr5 127276948 127277116 -25260143 - B3A SINE B2 -9 189 2 5 1556 909 65 3 1 chr5 127277400 127277536 -25259723 - ORR1A3 LTR MaLR -8 386 198 5 1556 702 273 0 0 chr5 127277600 127277754 -25259505 + B3A SINE B2 15 168 -30 5 1556 656 210 16 13 chr5 127278360 127278669 -25258590 + (TATG)n Simple_repeat Simple_repeat 1 310 0 5 1556 304 210 0 16 chr5 127278669 127278732 -25258527 + (TG)n Simple_repeat Simple_repeat 1 62 0 5 1556 755 294 33 40 chr5 127278944 127279245 -25258014 - Lx9 LINE L1 -116 7528 7230 5 1556 741 249 8 23 chr5 127279247 127279554 -25257705 + ORR1D1 LTR MaLR 1 368 -6 5 1556 413 304 53 0 chr5 127279598 127279769 -25257490 - B3A SINE B2 -17 181 2 5 1556 485 294 116 20 chr5 127279887 127280033 -25257226 - Lx8 LINE L1 -145 7328 7169 5 1556 907 284 65 63 chr5 127281211 127281670 -25255589 - RMER5 LTR ERV1 -16 518 59 5 1556 495 293 13 39 chr5 127281762 127281918 -25255341 - RSINE1 SINE B4 -6 159 8 5 1556 630 179 86 43 chr5 127282559 127282699 -25254560 - B1_Mm SINE Alu -1 146 1 5 1556 285 29 0 0 chr5 127283069 127283103 -25254156 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1556 399 322 14 14 chr5 127283804 127283952 -25253307 + B4A SINE B4 2 149 -143 5 1556 748 267 25 30 chr5 127284580 127284781 -25252478 + B4 SINE B4 24 223 -69 5 1556 3546 69 15 17 chr5 127284959 127285432 -25251827 + L1_Mus3 LINE L1 6153 6624 -14 5 1556 294 29 0 0 chr5 127285432 127285467 -25251792 + (TA)n Simple_repeat Simple_repeat 1 35 0 5 1556 393 22 0 0 chr5 127285467 127285512 -25251747 + (GA)n Simple_repeat Simple_repeat 2 47 0 5 1556 180 0 0 0 chr5 127285743 127285763 -25251496 + (CA)n Simple_repeat Simple_repeat 1 20 0 5 1556 408 20 0 0 chr5 127286150 127286199 -25251060 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1556 603 139 0 0 chr5 127286505 127286634 -25250625 + (TC)n Simple_repeat Simple_repeat 2 130 0 5 1556 636 331 38 34 chr5 127286982 127287273 -25249986 - B4A SINE B4 0 292 1 5 1556 1282 141 9 0 chr5 127287666 127287879 -25249380 + URR1B DNA MER1_type 11 225 0 5 1556 347 320 67 22 chr5 127288252 127288431 -25248828 + B4A SINE B4 106 292 0 5 1556 183 80 0 0 chr5 127288456 127288481 -25248778 + (CATA)n Simple_repeat Simple_repeat 2 26 0 5 1556 285 29 0 0 chr5 127288496 127288530 -25248729 + (CCA)n Simple_repeat Simple_repeat 1 34 0 5 1556 1935 131 24 42 chr5 127289572 127289907 -25247352 - ORR1A4 LTR MaLR 0 329 1 5 1556 216 0 0 0 chr5 127289921 127289945 -25247314 + (CA)n Simple_repeat Simple_repeat 2 25 0 5 1556 7407 53 3 1 chr5 127290104 127291016 -25246243 + L1Md_F2 LINE L1 5669 6582 0 5 1556 460 229 51 62 chr5 127291552 127291747 -25245512 + B2_Mm2 SINE B2 3 195 0 5 1556 1242 246 27 91 chr5 127292030 127292405 -25244854 + ORR1E LTR MaLR 9 359 0 5 1556 3445 160 40 82 chr5 127293141 127293857 -25243402 + RMER19B LTR ERVK 1 686 -216 5 1556 681 229 28 7 chr5 127293842 127293987 -25243272 - B3 SINE B2 -65 151 4 5 1556 796 172 6 6 chr5 127294725 127294895 -25242364 + (TATG)n Simple_repeat Simple_repeat 4 173 0 5 1556 1516 208 46 89 chr5 127295695 127296133 -25241126 - MTD LTR MaLR 0 419 1 5 1556 450 79 59 10 chr5 127296726 127296828 -25240431 + (TCTA)n Simple_repeat Simple_repeat 3 109 0 5 1556 618 169 47 121 chr5 127297218 127297474 -25239785 - Lx9 LINE L1 -1 7643 7407 5 1556 671 236 68 0 chr5 127297471 127297619 -25239640 + Lx9 LINE L1 7234 7391 -253 5 1556 206 344 21 21 chr5 127298296 127298391 -25238868 - MIR SINE MIR -119 143 49 5 1556 237 65 0 0 chr5 127298585 127298616 -25238643 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1556 269 377 0 9 chr5 127298640 127298755 -25238504 - MT2A LTR ERVL -114 419 306 5 1556 4446 16 0 12 chr5 127299810 127300309 -25236950 + MT2_Mm LTR ERVL 1 493 0 5 1556 41438 16 14 0 chr5 127300309 127305596 -25231663 + MERVL-int LTR ERVL 1 5360 -125 5 1556 354 167 46 35 chr5 127305596 127305683 -25231576 + ORR1A3-int LTR MaLR 553 640 -1323 5 1556 321 0 0 0 chr5 127305683 127305721 -25231538 + MERVL-int LTR ERVL 5448 5485 0 5 1556 4446 16 0 12 chr5 127305721 127306220 -25231039 + MT2_Mm LTR ERVL 1 493 0 5 1556 1508 226 28 43 chr5 127306348 127306700 -25230559 + MTE2b LTR MaLR 18 364 -15 5 1556 279 226 65 0 chr5 127306906 127306968 -25230291 + B1_Mur2 SINE Alu 53 118 -31 5 1556 273 57 0 0 chr5 127306991 127307026 -25230233 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 5 1556 2910 62 3 0 chr5 127307131 127307501 -25229758 - L1Md_A LINE L1 -1 6581 6211 5 1556 2179 77 3 4 chr5 127307501 127307793 -25229466 - L1Md_F2 LINE L1 -243 6339 6081 5 1556 405 39 0 0 chr5 127307793 127307844 -25229415 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1556 183 80 0 0 chr5 127307844 127307868 -25229391 + (TCTCTG)n Simple_repeat Simple_repeat 6 30 0 6 1556 1047 260 25 32 chr5 127307868 127307889 -25229370 - L1Md_F2 LINE L1 -611 6386 6369 5 1556 290 343 129 43 chr5 127307936 127308122 -25229137 - B3 SINE B2 -13 203 2 6 1556 234 0 0 0 chr5 127308346 127308372 -25228887 + (TAA)n Simple_repeat Simple_repeat 3 28 0 6 1556 248 203 0 33 chr5 127308530 127308591 -25228668 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 6 1556 1240 128 16 47 chr5 127308899 127309153 -25228106 + RLTR9A LTR ERVK 1 246 -122 6 1556 389 271 0 0 chr5 127309552 127309648 -25227611 + MTEb LTR MaLR 2 97 -282 6 1556 1235 179 76 31 chr5 127309651 127309968 -25227291 - RMER19C LTR ERVK -3 608 278 6 1556 1586 281 49 19 chr5 127310511 127311044 -25226215 - Lx8 LINE L1 -2 7471 6923 6 1556 4540 215 31 11 chr5 127311253 127312125 -25225134 - Lx5 LINE L1 -3 7047 6159 6 1556 3315 124 129 8 chr5 127312129 127312724 -25224535 + L1_Mur2 LINE L1 3584 4250 -1627 6 1556 1759 292 86 29 chr5 127314561 127315210 -25222049 + Lx8 LINE L1 6719 7404 -69 6 1556 589 209 0 25 chr5 127315269 127315282 -25221977 - B1_Mur3 SINE Alu -22 127 117 6 1556 537 16 0 0 chr5 127315282 127315344 -25221915 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 6 1556 607 156 0 1 chr5 127315344 127315448 -25221811 - B1_Mur2 SINE Alu -33 116 13 6 1556 528 16 0 0 chr5 127316161 127316222 -25221037 + (GA)n Simple_repeat Simple_repeat 2 62 0 6 1556 503 282 119 80 chr5 127317132 127317459 -25219800 + MTEa LTR MaLR 4 343 -36 6 1556 754 250 12 18 chr5 127317475 127317642 -25219617 - B3 SINE B2 -46 170 5 6 1556 283 339 101 40 chr5 127318349 127318576 -25218683 + MLT2B1 LTR ERVL 327 567 0 6 1556 291 347 34 87 chr5 127319507 127319603 -25217656 + MTEa LTR MaLR 1 96 -283 6 1556 1690 162 132 35 chr5 127319603 127319974 -25217285 + MTB_Mm LTR MaLR 1 407 0 6 1556 291 347 34 87 chr5 127319974 127320085 -25217174 + MTEa LTR MaLR 97 197 -182 6 1556 1555 191 113 6 chr5 127320828 127321191 -25216068 + MTD LTR MaLR 18 419 0 6 1556 21 36 0 0 chr5 127321460 127321488 -25215771 + AT_rich Low_complexity Low_complexity 1 28 0 6 1556 310 271 0 0 chr5 127321637 127321707 -25215552 + B3 SINE B2 4 73 -143 6 1556 1059 269 59 53 chr5 127321784 127321837 -25215422 + MTE2b LTR MaLR 20 58 -321 6 1556 477 50 0 0 chr5 127321837 127321897 -25215362 + (TA)n Simple_repeat Simple_repeat 2 61 0 6 1556 1059 269 59 53 chr5 127321897 127322200 -25215059 + MTE2b LTR MaLR 59 378 -1 6 1556 591 325 59 10 chr5 127322201 127322403 -25214856 - Lx8 LINE L1 -846 6627 6416 6 1556 268 372 16 0 chr5 127323443 127323564 -25213695 + MIRb SINE MIR 36 158 -110 6 1556 244 280 18 61 chr5 127323819 127323933 -25213326 + GA-rich Low_complexity Low_complexity 1 109 0 6 1556 428 128 0 13 chr5 127323933 127324012 -25213247 + (GGA)n Simple_repeat Simple_repeat 1 78 0 6 1556 627 298 0 44 chr5 127324975 127325133 -25212126 + RSINE1 SINE B4 3 153 -12 6 1556 261 57 0 0 chr5 127325136 127325171 -25212088 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1556 304 355 7 7 chr5 127325485 127325627 -25211632 + GA-rich Low_complexity Low_complexity 2 143 0 6 1556 243 0 0 0 chr5 127326114 127326141 -25211118 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 6 1556 522 368 45 0 chr5 127326221 127326376 -25210883 - RSINE1 SINE B4 -1 164 3 6 1556 760 270 18 22 chr5 127326376 127326600 -25210659 - B4 SINE B4 -63 229 7 6 1556 728 262 28 14 chr5 127328272 127328485 -25208774 + ID_B1 SINE B4 2 217 -7 6 1556 867 186 0 14 chr5 127328531 127328678 -25208581 - B1_Mus2 SINE Alu 0 147 3 6 1556 572 196 0 9 chr5 127329026 127329139 -25208120 - B1_Mur1 SINE Alu -2 147 36 6 1556 690 227 45 26 chr5 127329368 127329522 -25207737 + B4A SINE B4 5 161 -131 6 1556 635 0 13 0 chr5 127329524 127329599 -25207660 + (TC)n Simple_repeat Simple_repeat 1 76 0 6 1556 327 113 0 0 chr5 127329599 127329651 -25207608 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1556 219 218 0 0 chr5 127329662 127329717 -25207542 + (CATA)n Simple_repeat Simple_repeat 4 58 0 6 1556 315 267 0 0 chr5 127330657 127330732 -25206527 - RLTR24 LTR ERV1 -454 75 1 6 1556 821 240 7 7 chr5 127330734 127330889 -25206370 + Lx8 LINE L1 7173 7327 -146 6 1556 227 79 26 0 chr5 127330891 127330929 -25206330 + (GGGAGA)n Simple_repeat Simple_repeat 1 39 0 6 1556 2001 175 51 22 chr5 127331475 127331884 -25205375 + Lx9 LINE L1 6978 7398 -246 6 1556 297 0 0 0 chr5 127332433 127332466 -25204793 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6 1556 336 48 0 0 chr5 127333073 127333115 -25204144 + (CAT)n Simple_repeat Simple_repeat 2 43 0 6 1556 281 300 0 72 chr5 127333268 127333365 -25203894 - PB1D10 SINE Alu 0 117 28 6 1556 560 216 93 20 chr5 127333628 127333779 -25203480 - RSINE1 SINE B4 -2 163 2 6 1556 441 54 0 0 chr5 127334590 127334646 -25202613 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1556 1017 226 128 49 chr5 127334898 127334976 -25202283 - MTEa LTR MaLR 0 379 286 6 1556 2433 149 10 34 chr5 127334976 127335393 -25201866 + MTB_Mm LTR MaLR 1 407 0 6 1556 1017 226 128 49 chr5 127335393 127335659 -25201600 - MTEa LTR MaLR -94 285 8 6 1556 269 306 96 36 chr5 127335688 127335854 -25201405 - Lx9 LINE L1 -289 7355 7180 6 1556 1591 170 125 0 chr5 127335874 127336162 -25201097 - ORR1A3 LTR MaLR -2 324 1 6 1556 213 39 0 0 chr5 127336405 127336431 -25200828 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1556 225 0 0 0 chr5 127336492 127336517 -25200742 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 6 1556 475 248 17 17 chr5 127338742 127338857 -25198402 - PB1D10 SINE Alu -2 115 1 6 1556 487 323 75 57 chr5 127338860 127339096 -25198163 - MER45B DNA Tip100 -142 898 652 6 1556 917 255 5 10 chr5 127339096 127339302 -25197957 + B3 SINE B2 1 205 -11 6 1556 487 323 75 57 chr5 127339302 127339560 -25197699 - MER45B DNA Tip100 -389 651 395 6 1556 336 321 15 8 chr5 127339562 127339694 -25197565 - MER45B DNA Tip100 -849 191 59 6 1556 2617 131 36 22 chr5 127339735 127340148 -25197111 - MTC LTR MaLR -2 419 1 6 1556 375 250 96 34 chr5 127340209 127340387 -25196872 - L1M4 LINE L1 -6333 209 21 6 1556 201 39 0 0 chr5 127340752 127340778 -25196481 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 6 1556 955 213 109 28 chr5 127340787 127341079 -25196180 - Lx2B LINE L1 -32 7026 6647 6 1556 718 256 32 76 chr5 127341263 127341512 -25195747 - ORR1E LTR MaLR -5 354 117 6 1556 917 255 24 14 chr5 127341779 127341990 -25195269 + B3 SINE B2 3 215 -1 6 1556 434 33 0 16 chr5 127342064 127342125 -25195134 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 6 1556 390 323 23 0 chr5 127342655 127342788 -25194471 - MER20 DNA MER1_type -83 136 1 6 1556 815 186 14 0 chr5 127343021 127343161 -25194098 - B1_Mur4 SINE Alu -8 142 1 6 1556 2686 136 26 30 chr5 127343309 127343816 -25193443 + RMER6A LTR ERVK 1 505 -251 6 1556 1417 180 54 18 chr5 127343792 127344237 -25193022 + RMER6A LTR ERVK 321 756 0 6 1556 1073 283 21 25 chr5 127344315 127344594 -25192665 + B4 SINE B4 11 288 -4 6 1556 936 225 47 5 chr5 127344801 127345015 -25192244 + URR1B DNA MER1_type 2 224 -1 6 1556 441 0 0 0 chr5 127345699 127345748 -25191511 + (TC)n Simple_repeat Simple_repeat 1 49 0 6 1556 561 99 0 0 chr5 127345748 127345829 -25191430 + (TG)n Simple_repeat Simple_repeat 1 81 0 6 1556 884 52 19 31 chr5 127346695 127346855 -25190404 + (TCTA)n Simple_repeat Simple_repeat 4 161 0 6 1556 466 224 54 45 chr5 127346869 127346952 -25190307 - ID_B1 SINE B4 -7 217 133 6 1556 4150 38 6 33 chr5 127346952 127347469 -25189790 + RLTR1C LTR ERV1 1 503 0 6 1556 466 224 54 45 chr5 127347469 127347497 -25189762 - ID_B1 SINE B4 -92 132 105 6 1556 243 272 12 36 chr5 127347729 127347813 -25189446 + L1MA4 LINE L1 5847 5928 -372 6 1556 773 291 43 49 chr5 127348048 127348395 -25188864 + RMER15 LTR ERVL 226 570 -5 6 1556 1197 149 67 43 chr5 127348941 127349194 -25188065 + Lx LINE L1 6393 6651 -3 6 1556 22 35 0 0 chr5 127349474 127349503 -25187756 + AT_rich Low_complexity Low_complexity 1 29 0 6 1556 694 241 75 50 chr5 127349946 127350147 -25187112 + B3A SINE B2 6 211 -5 6 1556 681 309 13 39 chr5 127350232 127350461 -25186798 - MTE2b LTR MaLR -116 263 41 6 1556 897 75 29 11 chr5 127350527 127350702 -25186557 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 6 1556 243 228 0 71 chr5 127350742 127350841 -25186418 + GA-rich Low_complexity Low_complexity 2 93 0 6 1556 361 269 0 2 chr5 127351308 127351416 -25185843 + L1M2 LINE L1 5065 5220 -923 6 1556 22 0 0 0 chr5 127351465 127351487 -25185772 + AT_rich Low_complexity Low_complexity 1 22 0 6 1556 1133 126 0 59 chr5 127351487 127351711 -25185548 - L1Md_F2 LINE L1 0 6582 6381 6 1556 333 0 0 0 chr5 127351793 127351830 -25185429 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 6 1556 347 0 0 23 chr5 127351830 127351873 -25185386 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1556 893 188 6 0 chr5 127351873 127352033 -25185226 - B3A SINE B2 -36 162 2 6 1556 283 248 82 74 chr5 127352617 127352752 -25184507 + B1F SINE Alu 5 140 -9 6 1556 192 77 0 0 chr5 127352819 127352845 -25184414 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 6 1556 836 278 104 30 chr5 127352891 127353285 -25183974 - MER67C LTR ERV1 -286 425 3 6 1556 221 321 73 9 chr5 127353318 127353428 -25183831 + L2c LINE L2 3256 3372 -15 6 1556 876 275 109 31 chr5 127353448 127353861 -25183398 + L1M2 LINE L1 5265 5709 -582 6 1556 350 201 0 0 chr5 127353934 127354003 -25183256 - PB1D10 SINE Alu -50 70 2 6 1556 849 176 0 20 chr5 127354355 127354506 -25182753 + B1_Mur4 SINE Alu 2 149 -1 6 1556 1809 207 64 35 chr5 127355476 127355687 -25181572 + MTD LTR MaLR 3 205 -214 6 1556 1305 92 11 0 chr5 127355687 127355861 -25181398 + B2_Mm1t SINE B2 2 177 -16 6 1556 513 44 0 0 chr5 127355862 127355930 -25181329 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 6 1556 1809 207 64 35 chr5 127355930 127356121 -25181138 + MTD LTR MaLR 206 419 0 6 1556 5100 171 36 8 chr5 127356159 127357036 -25180223 - RMER19B LTR ERVK 0 902 1 6 1556 391 195 293 30 chr5 127357299 127357463 -25179796 - B3A SINE B2 0 216 10 7 1556 557 94 12 0 chr5 127357473 127357558 -25179701 + (TC)n Simple_repeat Simple_repeat 2 87 0 7 1556 538 209 64 147 chr5 127358610 127358767 -25178492 - B3 SINE B2 -25 191 41 7 1556 378 0 0 0 chr5 127358779 127358821 -25178438 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1556 390 359 16 0 chr5 127358835 127358963 -25178296 - RSINE1 SINE B4 -8 157 28 7 1556 800 243 11 0 chr5 127359333 127359510 -25177749 + ID_B1 SINE B4 29 207 -17 7 1556 234 0 0 0 chr5 127359516 127359542 -25177717 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 7 1556 204 67 0 0 chr5 127359920 127359950 -25177309 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1556 375 302 99 15 chr5 127360032 127360163 -25177096 + ORR1E LTR MaLR 6 147 -212 7 1556 755 272 109 15 chr5 127360417 127360682 -25176577 + B4 SINE B4 3 292 0 7 1556 417 110 0 0 chr5 127360687 127360760 -25176499 + (CA)n Simple_repeat Simple_repeat 2 74 0 7 1556 341 215 0 0 chr5 127361161 127361226 -25176033 - ID SINE ID -158 66 2 7 1556 301 238 112 0 chr5 127361371 127361451 -25175808 + RSINE1 SINE B4 41 129 -36 7 1556 21 57 0 0 chr5 127361496 127361531 -25175728 + AT_rich Low_complexity Low_complexity 1 35 0 7 1556 1163 298 70 31 chr5 127362312 127362871 -25174388 + Lx9 LINE L1 6900 7623 -21 7 1556 378 289 17 9 chr5 127364369 127364484 -25172775 + CT-rich Low_complexity Low_complexity 1 116 0 7 1556 234 329 49 42 chr5 127364565 127364703 -25172556 - MER2 DNA MER2_type -32 313 174 7 1556 742 234 58 0 chr5 127364703 127364874 -25172385 + B3A SINE B2 3 183 -15 7 1556 180 0 0 0 chr5 127364895 127364915 -25172344 + (CTG)n Simple_repeat Simple_repeat 1 20 0 7 1556 234 349 0 76 chr5 127365430 127365548 -25171711 + ORR1E LTR MaLR 88 196 -163 7 1556 1130 264 50 22 chr5 127366438 127366795 -25170464 - L1M2 LINE L1 -1227 4916 4550 7 1556 189 135 19 37 chr5 127366821 127366875 -25170384 + GA-rich Low_complexity Low_complexity 1 53 0 7 1556 990 48 0 0 chr5 127366886 127367010 -25170249 + (GA)n Simple_repeat Simple_repeat 1 124 0 7 1556 919 178 94 25 chr5 127368228 127368430 -25168829 + B3 SINE B2 1 216 0 7 1556 1035 300 85 5 chr5 127368602 127369037 -25168222 - Lx8 LINE L1 -32 7441 6972 7 1556 1245 261 30 19 chr5 127369277 127369626 -25167633 - ORR1E LTR MaLR -2 417 6 7 1556 401 234 68 34 chr5 127369967 127370113 -25167146 - L1M2 LINE L1 -926 5217 5067 7 1556 378 0 0 0 chr5 127370901 127370943 -25166316 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1556 486 0 0 0 chr5 127371615 127371669 -25165590 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1556 247 280 115 40 chr5 127372954 127373098 -25164161 + L1_Mur2 LINE L1 4839 5001 -876 7 1556 558 241 14 21 chr5 127373123 127373263 -25163996 + RSINE1 SINE B4 2 140 -25 7 1556 795 272 6 0 chr5 127373493 127373673 -25163586 + B3A SINE B2 2 182 -16 7 1556 576 0 0 0 chr5 127374204 127374268 -25162991 + (TA)n Simple_repeat Simple_repeat 2 65 0 7 1556 423 0 0 0 chr5 127375377 127375424 -25161835 + (A)n Simple_repeat Simple_repeat 1 47 0 7 1556 21 0 0 0 chr5 127375572 127375593 -25161666 + AT_rich Low_complexity Low_complexity 1 21 0 7 1556 568 281 115 0 chr5 127376689 127376925 -25160334 + L1PB4 LINE L1 5636 5935 -221 7 1556 21 71 0 0 chr5 127377183 127377225 -25160034 + AT_rich Low_complexity Low_complexity 1 42 0 7 1556 504 0 0 0 chr5 127378217 127378273 -25158986 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1556 192 77 0 0 chr5 127378291 127378317 -25158942 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1556 221 0 35 0 chr5 127378433 127378462 -25158797 + (GA)n Simple_repeat Simple_repeat 2 31 0 7 1556 356 263 0 0 chr5 127378462 127378538 -25158721 - B1F2 SINE Alu -21 128 53 7 1556 509 220 45 135 chr5 127378595 127378795 -25158464 - B3A SINE B2 -16 182 1 7 1556 30 0 0 0 chr5 127378905 127378935 -25158324 + AT_rich Low_complexity Low_complexity 1 30 0 7 1556 943 200 35 10 chr5 127378937 127379139 -25158120 - B3 SINE B2 0 216 10 7 1556 757 143 74 15 chr5 127379374 127379503 -25157756 + B1_Mur4 SINE Alu 1 138 -12 7 1556 675 0 0 0 chr5 127379503 127379578 -25157681 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 7 1556 239 80 40 0 chr5 127379599 127379649 -25157610 - L1Md_F3 LINE L1 -1 6583 6532 7 1556 6913 51 0 1 chr5 127379648 127380519 -25156740 + L1_Mm LINE L1 3029 3898 -1985 7 1556 231 288 112 45 chr5 127380519 127380697 -25156562 - MER113 DNA MER1_type -126 395 206 7 1556 1197 244 5 92 chr5 127381082 127381471 -25155788 + ORR1E LTR MaLR 5 359 0 7 1556 752 278 34 0 chr5 127381658 127381867 -25155392 - ID_B1 SINE B4 -4 220 5 7 1556 342 283 17 42 chr5 127382199 127382317 -25154942 + PB1D10 SINE Alu 1 115 -2 7 1556 421 237 37 68 chr5 127382708 127382871 -25154388 - HAL1-2a_MD LINE L1 -523 2501 2344 7 1556 201 325 0 0 chr5 127382871 127382948 -25154311 + (ATGGTG)n Simple_repeat Simple_repeat 2 78 0 7 1556 207 100 0 0 chr5 127382967 127382997 -25154262 + (TGG)n Simple_repeat Simple_repeat 1 30 0 7 1556 256 239 43 29 chr5 127384660 127384729 -25152530 + ID4 SINE ID 8 77 -6 7 1556 461 17 0 17 chr5 127384821 127384880 -25152379 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1556 423 0 0 0 chr5 127384880 127384926 -25152333 + (GA)n Simple_repeat Simple_repeat 1 47 0 7 1556 321 318 7 57 chr5 127384933 127385073 -25152186 - RSINE1 SINE B4 -31 134 2 7 1556 212 262 33 0 chr5 127385711 127385772 -25151487 + MIR SINE MIR 84 146 -116 7 1556 296 315 92 33 chr5 127386388 127386572 -25150687 + RMER15 LTR ERVL 354 548 -27 7 1556 405 340 47 14 chr5 127387816 127388028 -25149231 + MLT1D LTR MaLR 23 241 -264 7 1556 329 271 109 71 chr5 127388064 127388247 -25149012 + MLT1D LTR MaLR 310 499 -6 7 1556 613 208 8 8 chr5 127388348 127388474 -25148785 - RSINE1 SINE B4 -38 127 2 7 1556 2000 169 96 35 chr5 127388482 127388971 -25148288 - RLTR11A LTR ERVK -9 519 1 7 1556 745 216 7 0 chr5 127389519 127389667 -25147592 + B3A SINE B2 3 151 -47 7 1556 606 49 0 0 chr5 127389673 127389755 -25147504 + (CA)n Simple_repeat Simple_repeat 1 82 0 7 1556 477 265 126 50 chr5 127390460 127390595 -25146664 + ORR1E LTR MaLR 9 162 -197 7 1556 1259 226 81 53 chr5 127390595 127390955 -25146304 + ORR1D2 LTR MaLR 1 370 0 7 1556 477 272 97 77 chr5 127390955 127391092 -25146167 + ORR1E LTR MaLR 149 284 -86 7 1556 21 0 0 0 chr5 127392771 127392792 -25144467 + AT_rich Low_complexity Low_complexity 1 21 0 7 1556 1557 235 44 25 chr5 127393177 127393583 -25143676 - MTD LTR MaLR 0 419 6 7 1556 475 326 138 29 chr5 127394764 127395010 -25142249 + B4A SINE B4 6 278 -14 7 1556 267 114 0 0 chr5 127395042 127395086 -25142173 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1556 278 356 17 0 chr5 127395975 127396093 -25141166 - MLT1A0 LTR MaLR -39 326 207 7 1556 301 176 191 0 chr5 127396499 127396567 -25140692 + B3 SINE B2 1 81 -135 7 1556 458 179 8 17 chr5 127396577 127396696 -25140563 + ORR1B2 LTR MaLR 1 118 -249 7 1556 1581 127 51 37 chr5 127396694 127396989 -25140270 + ORR1B2 LTR MaLR 59 357 -10 7 1556 396 214 56 0 chr5 127396997 127397086 -25140173 + B3 SINE B2 95 188 -28 7 1556 288 0 0 0 chr5 127397086 127397118 -25140141 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1556 303 289 26 0 chr5 127397202 127397278 -25139981 + ID SINE ID 2 79 -145 7 1556 137 42 0 0 chr5 127397294 127397487 -25139772 + AT_rich Low_complexity Low_complexity 1 193 0 7 1556 855 285 95 15 chr5 127397537 127397811 -25139448 - ORR1E LTR MaLR -4 355 60 7 1556 369 251 76 22 chr5 127397800 127397943 -25139316 - ORR1D2 LTR MaLR -221 138 1 7 1556 893 176 108 0 chr5 127399256 127399432 -25137827 - B3 SINE B2 -17 199 5 7 1556 582 82 0 0 chr5 127399752 127399837 -25137422 + (GA)n Simple_repeat Simple_repeat 1 85 0 7 1556 1599 27 0 0 chr5 127400674 127401006 -25136253 + (TG)n Simple_repeat Simple_repeat 1 332 0 7 1557 2983 65 42 0 chr5 127401999 127402383 -25134876 + MTB LTR MaLR 1 400 0 7 1557 414 0 0 0 chr5 127403625 127403671 -25133588 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1557 232 381 0 24 chr5 127403671 127403835 -25133424 + (TATG)n Simple_repeat Simple_repeat 3 162 0 7 1557 245 388 0 0 chr5 127403718 127403834 -25133425 + (TG)n Simple_repeat Simple_repeat 2 117 0 7 1557 275 75 29 43 chr5 127403876 127403946 -25133313 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 7 1557 306 0 0 0 chr5 127404293 127404327 -25132932 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1557 621 250 65 54 chr5 127404506 127404692 -25132567 - B3A SINE B2 0 198 11 7 1557 301 300 64 0 chr5 127405069 127405179 -25132080 + MTEa LTR MaLR 259 375 -4 7 1557 217 236 11 22 chr5 127405395 127405486 -25131773 + (GGATG)n Simple_repeat Simple_repeat 3 92 0 7 1557 309 125 47 81 chr5 127405611 127405759 -25131500 + (GGATG)n Simple_repeat Simple_repeat 1 143 0 7 1557 515 121 16 94 chr5 127405772 127405963 -25131296 + (GGATG)n Simple_repeat Simple_repeat 1 176 0 7 1557 343 168 65 58 chr5 127405984 127406123 -25131136 + (GGATG)n Simple_repeat Simple_repeat 1 140 0 7 1557 298 283 0 42 chr5 127406984 127407080 -25130179 + (CATATA)n Simple_repeat Simple_repeat 5 96 0 7 1557 246 32 0 0 chr5 127407230 127407261 -25129998 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1557 204 146 24 0 chr5 127407590 127407631 -25129628 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 7 1557 1323 62 0 0 chr5 127407659 127407837 -25129422 + (TAGA)n Simple_repeat Simple_repeat 2 179 0 7 1557 1850 232 86 12 chr5 127408286 127408787 -25128472 + RMER15 LTR ERVL 38 575 0 7 1557 270 318 14 108 chr5 127410217 127410365 -25126894 - MER58A DNA MER1_type -69 155 22 7 1557 441 0 0 0 chr5 127410569 127410618 -25126641 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1557 294 261 120 0 chr5 127410891 127410983 -25126276 + Lx8 LINE L1 7131 7233 -240 8 1557 21 0 0 0 chr5 127412113 127412134 -25125125 + AT_rich Low_complexity Low_complexity 1 21 0 8 1557 29 47 0 0 chr5 127412172 127412215 -25125044 + AT_rich Low_complexity Low_complexity 1 43 0 8 1557 459 306 40 17 chr5 127412219 127412395 -25124864 - Lx8 LINE L1 -163 7310 7131 8 1557 378 162 13 13 chr5 127412516 127412591 -25124668 - Lx8 LINE L1 -311 7162 7088 8 1557 820 241 107 33 chr5 127412998 127413320 -25123939 - MTD LTR MaLR -42 377 6 8 1557 339 282 93 42 chr5 127413335 127413559 -25123700 - ORR1E LTR MaLR -32 347 98 8 1557 653 281 226 4 chr5 127415127 127415197 -25122062 - MTD LTR MaLR 0 419 331 8 1557 2342 203 57 92 chr5 127415197 127415830 -25121429 + RMER19C LTR ERVK 1 611 0 8 1557 653 282 198 14 chr5 127415830 127416090 -25121169 - MTD LTR MaLR -89 330 1 8 1557 232 340 84 32 chr5 127416330 127416485 -25120774 - LTR16B2 LTR ERVL -226 236 74 8 1557 234 216 13 26 chr5 127416608 127416684 -25120575 + (CA)n Simple_repeat Simple_repeat 2 76 0 8 1557 636 158 52 17 chr5 127416702 127417054 -25120205 + (CA)n Simple_repeat Simple_repeat 1 364 0 8 1557 273 213 53 11 chr5 127417065 127417160 -25120099 + (CA)n Simple_repeat Simple_repeat 1 99 0 8 1557 182 136 60 24 chr5 127417160 127417243 -25120016 + (CACAC)n Simple_repeat Simple_repeat 3 88 0 8 1557 2267 38 3 74 chr5 127417268 127417607 -25119652 + RLTR10B2 LTR ERVK 50 364 -1 8 1557 324 0 0 0 chr5 127417607 127417643 -25119616 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1557 270 366 79 18 chr5 127418621 127418849 -25118410 - LTR33A LTR ERVL -255 265 24 8 1557 22 56 0 0 chr5 127419205 127419241 -25118018 + AT_rich Low_complexity Low_complexity 1 36 0 8 1557 216 122 0 0 chr5 127419511 127419552 -25117707 + (TA)n Simple_repeat Simple_repeat 1 41 0 8 1557 338 247 24 12 chr5 127419730 127419812 -25117447 - PB1D7 SINE Alu -32 88 6 8 1557 1341 243 80 31 chr5 127420469 127420818 -25116441 + ORR1D1 LTR MaLR 1 366 -8 8 1557 626 171 8 0 chr5 127420820 127420943 -25116316 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 8 1557 1775 159 22 0 chr5 127420943 127421258 -25116001 + ORR1A2 LTR MaLR 1 322 -5 8 1557 504 196 34 28 chr5 127421269 127421382 -25115877 + (TCTA)n Simple_repeat Simple_repeat 4 120 0 8 1557 4427 164 80 46 chr5 127421382 127422259 -25115000 - RMER13B LTR ERVK 0 908 2 8 1557 645 80 0 0 chr5 127422259 127422347 -25114912 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 8 1557 627 81 0 0 chr5 127422347 127422432 -25114827 + (TTTC)n Simple_repeat Simple_repeat 3 88 0 8 1557 504 196 34 28 chr5 127422432 127422494 -25114765 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 8 1557 180 0 0 0 chr5 127422946 127422966 -25114293 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 8 1557 330 26 0 0 chr5 127423215 127423254 -25114005 + (TTG)n Simple_repeat Simple_repeat 3 41 0 8 1557 505 264 37 50 chr5 127423317 127423588 -25113671 - ORR1E LTR MaLR -105 265 3 8 1557 632 229 59 6 chr5 127424077 127424239 -25113020 + B3 SINE B2 1 165 -28 8 1557 1479 190 83 24 chr5 127424592 127424964 -25112295 - MTD LTR MaLR -14 405 12 8 1557 370 307 9 38 chr5 127425838 127425943 -25111316 - RSINE1 SINE B4 -2 163 62 8 1557 21 0 0 0 chr5 127426309 127426330 -25110929 + AT_rich Low_complexity Low_complexity 1 21 0 8 1557 212 163 0 0 chr5 127427197 127427240 -25110019 + (TTG)n Simple_repeat Simple_repeat 2 44 0 8 1557 318 26 0 0 chr5 127427526 127427565 -25109694 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1557 319 287 0 44 chr5 127427982 127428095 -25109164 - Lx8 LINE L1 -6 7467 7360 8 1557 701 276 35 20 chr5 127428179 127428382 -25108877 + B3 SINE B2 6 211 -5 8 1557 376 209 27 0 chr5 127428408 127428520 -25108739 + B3 SINE B2 1 214 -2 8 1557 186 103 0 0 chr5 127428523 127428552 -25108707 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 8 1557 922 215 31 0 chr5 127428824 127429019 -25108240 + B3 SINE B2 16 216 0 8 1557 279 0 0 0 chr5 127429037 127429068 -25108191 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1557 717 211 66 35 chr5 127429604 127429801 -25107458 + B3 SINE B2 1 203 -13 8 1557 321 341 151 6 chr5 127431669 127432026 -25105233 + L1MC LINE L1 3650 4058 -2088 8 1557 2021 235 120 10 chr5 127432045 127432553 -25104706 + Lx5 LINE L1 6486 7049 -1 8 1557 349 372 57 8 chr5 127433371 127433615 -25103644 + L1MC LINE L1 5036 5291 -855 8 1557 645 270 21 21 chr5 127433621 127433814 -25103445 + B4A SINE B4 1 193 -99 8 1557 531 0 0 0 chr5 127433893 127433952 -25103307 + (TC)n Simple_repeat Simple_repeat 1 59 0 8 1557 321 26 0 0 chr5 127433952 127433989 -25103270 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1557 198 0 0 0 chr5 127434114 127434136 -25103123 + (CCCCCA)n Simple_repeat Simple_repeat 5 26 0 8 1557 691 191 69 0 chr5 127435431 127435562 -25101697 - B1_Mur3 SINE Alu -8 141 2 8 1557 322 257 26 71 chr5 127435468 127435581 -25101678 - MT2B LTR ERVL -344 257 150 8 1557 249 33 0 0 chr5 127435671 127435701 -25101558 + (CA)n Simple_repeat Simple_repeat 1 30 0 8 1557 498 17 0 0 chr5 127435893 127435952 -25101307 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1557 229 355 0 108 chr5 127436125 127436283 -25100976 - ID_B1 SINE B4 -82 142 2 8 1557 1146 295 60 15 chr5 127437240 127437639 -25099620 - MTD LTR MaLR 0 419 3 8 1557 670 241 48 0 chr5 127437853 127437998 -25099261 - B3 SINE B2 -63 153 2 8 1557 335 357 52 42 chr5 127438007 127438317 -25098942 - LTR53 LTR ERVL -9 510 198 8 1557 1498 264 24 21 chr5 127438685 127439103 -25098156 + MTD LTR MaLR 1 419 0 8 1557 529 280 167 8 chr5 127439281 127439526 -25097733 + B4A SINE B4 5 288 -4 8 1557 2045 139 45 3 chr5 127440234 127440566 -25096693 - ORR1A1 LTR MaLR 0 346 1 8 1557 1009 184 53 0 chr5 127440612 127440802 -25096457 - B3 SINE B2 -13 203 4 8 1557 3423 76 6 37 chr5 127441000 127441490 -25095769 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1557 4084 94 27 41 chr5 127441500 127442220 -25095039 + IAPEz-int LTR ERVK 35 662 -5819 8 1557 964 67 0 0 chr5 127442220 127442339 -25094920 + IAPEz-int LTR ERVK 1359 1477 -5004 8 1557 1929 82 4 0 chr5 127442340 127442585 -25094674 + IAPEz-int LTR ERVK 2252 2497 -5183 8 1557 15500 36 3 7 chr5 127442603 127444415 -25092844 + IAPEz-int LTR ERVK 4678 6481 0 8 1557 3413 78 6 37 chr5 127444415 127444905 -25092354 + IAPLTR2_Mm LTR ERVK 1 475 0 8 1557 1191 229 3 14 chr5 127444933 127445212 -25092047 - ORR1E LTR MaLR -99 271 1 8 1557 480 274 150 68 chr5 127445963 127446054 -25091205 + B4A SINE B4 5 98 -194 8 1557 610 264 46 31 chr5 127446054 127446249 -25091010 + B3A SINE B2 1 198 0 8 1557 480 274 150 68 chr5 127446249 127446423 -25090836 + B4A SINE B4 99 292 0 8 1557 626 95 11 0 chr5 127446487 127446582 -25090677 + (TAGA)n Simple_repeat Simple_repeat 4 99 0 8 1557 252 0 0 0 chr5 127447203 127447231 -25090028 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1557 233 290 213 21 chr5 127447840 127447981 -25089278 + MLT1I LTR MaLR 205 372 -39 8 1557 417 169 0 0 chr5 127448015 127448098 -25089161 + (CACCAT)n Simple_repeat Simple_repeat 2 84 0 8 1557 877 202 139 3 chr5 127448098 127448467 -25088792 + MTD LTR MaLR 1 419 0 8 1557 346 307 36 0 chr5 127448467 127448604 -25088655 + HAL1-2a_MD LINE L1 2346 2487 -537 8 1557 229 338 28 0 chr5 127448853 127448924 -25088335 + ID SINE ID 1 73 -151 8 1557 297 0 0 0 chr5 127449317 127449350 -25087909 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1557 244 284 125 10 chr5 127449355 127449451 -25087808 - RSINE1 SINE B4 -17 148 42 8 1557 189 0 0 0 chr5 127450333 127450354 -25086905 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1557 832 249 13 18 chr5 127450355 127450580 -25086679 - RMER15 LTR ERVL -54 521 298 8 1557 518 208 302 22 chr5 127450784 127450952 -25086307 - B3 SINE B2 0 216 2 8 1557 1536 264 170 28 chr5 127451468 127451672 -25085587 - Lx8 LINE L1 -2 7471 7234 8 1557 707 87 0 9 chr5 127451672 127451777 -25085482 + (TCTCCC)n Simple_repeat Simple_repeat 3 106 0 8 1557 1536 264 170 28 chr5 127451777 127452242 -25085017 - Lx8 LINE L1 -240 7233 6708 8 1557 322 260 96 58 chr5 127452749 127452937 -25084322 - B3A SINE B2 0 198 4 8 1557 840 228 40 126 chr5 127453350 127453772 -25083487 - Lx7 LINE L1 -18 7678 7293 8 1557 623 312 72 57 chr5 127453816 127454234 -25083025 - MER67D LTR ERV1 -31 483 60 8 1557 252 0 0 0 chr5 127454398 127454426 -25082833 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1557 405 0 0 0 chr5 127454509 127454554 -25082705 + (TA)n Simple_repeat Simple_repeat 1 45 0 8 1557 276 30 0 0 chr5 127454554 127454586 -25082673 + (GA)n Simple_repeat Simple_repeat 2 34 0 8 1557 372 124 20 40 chr5 127454697 127454798 -25082461 + (CAGAGA)n Simple_repeat Simple_repeat 2 100 0 8 1557 236 256 11 11 chr5 127454799 127454886 -25082373 + GA-rich Low_complexity Low_complexity 2 88 0 8 1557 342 342 57 10 chr5 127455040 127455232 -25082027 - MamRep137 DNA TcMar? -149 295 95 8 1557 480 111 0 0 chr5 127455726 127455798 -25081461 + (TC)n Simple_repeat Simple_repeat 1 72 0 8 1557 446 259 99 105 chr5 127455812 127456106 -25081153 - B4A SINE B4 0 292 1 8 1557 711 230 131 0 chr5 127456469 127456660 -25080599 + B3 SINE B2 1 216 0 8 1557 1630 219 30 65 chr5 127456926 127457435 -25079824 + RMER5 LTR ERV1 44 534 0 8 1557 1203 73 11 0 chr5 127457714 127457877 -25079382 + B2_Mm1t SINE B2 14 178 -15 8 1557 1071 89 7 7 chr5 127457877 127458024 -25079235 + B1_Mus2 SINE Alu 1 147 0 8 1557 1203 73 11 0 chr5 127458024 127458037 -25079222 + B2_Mm1t SINE B2 179 191 -2 8 1557 611 242 13 51 chr5 127458271 127458428 -25078831 - B3A SINE B2 -15 183 33 8 1557 260 321 49 58 chr5 127458725 127458930 -25078329 - ORR1D2 LTR MaLR 0 370 168 8 1557 1456 212 83 17 chr5 127460069 127460420 -25076839 - MTEa LTR MaLR -2 377 4 8 1557 2394 157 73 60 chr5 127460433 127460498 -25076761 - RLTR11A LTR ERVK 0 528 464 8 1557 192 40 0 0 chr5 127460498 127460523 -25076736 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1557 2394 157 73 60 chr5 127460523 127460978 -25076281 - RLTR11A LTR ERVK -65 463 1 8 1557 577 250 9 31 chr5 127460992 127461152 -25076107 + B3A SINE B2 48 203 -13 9 1557 216 250 0 0 chr5 127461152 127461200 -25076059 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1557 1124 250 76 34 chr5 127462064 127462449 -25074810 - BGLII_B LTR ERVK -21 420 22 9 1557 223 148 0 76 chr5 127462787 127462853 -25074406 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 9 1557 300 234 78 136 chr5 127463371 127463577 -25073682 + MTE2a LTR MaLR 178 352 -27 9 1557 400 286 42 21 chr5 127463634 127463777 -25073482 + RMER15 LTR ERVL 337 482 -93 9 1557 1372 214 45 39 chr5 127463792 127464071 -25073188 - RLTR12B LTR ERVK -3 525 244 9 1557 3091 14 0 9 chr5 127464071 127464420 -25072839 + ORR1A0 LTR MaLR 1 346 0 9 1557 14282 44 23 1 chr5 127464420 127466172 -25071087 + ORR1A0-int LTR MaLR 1 1792 0 9 1557 3085 26 0 0 chr5 127466172 127466518 -25070741 + ORR1A0 LTR MaLR 1 346 0 9 1557 1372 214 45 39 chr5 127466518 127466592 -25070667 - RLTR12B LTR ERVK -285 243 170 9 1557 1131 266 87 11 chr5 127466791 127467160 -25070099 - MTD LTR MaLR 0 419 23 9 1557 1386 198 53 130 chr5 127468111 127468565 -25068694 + MTD LTR MaLR 1 419 0 9 1557 384 317 132 24 chr5 127468830 127468890 -25068369 + L1MA6 LINE L1 5866 5937 -363 9 1557 287 98 0 38 chr5 127468890 127468943 -25068316 + (CATA)n Simple_repeat Simple_repeat 2 52 0 9 1557 596 293 61 30 chr5 127468943 127469254 -25068005 + L1MA6 LINE L1 5938 6277 -23 9 1557 23 0 0 0 chr5 127469338 127469361 -25067898 + AT_rich Low_complexity Low_complexity 1 23 0 9 1557 1992 188 49 16 chr5 127469478 127469905 -25067354 - BGLII_B LTR ERVK 0 441 1 9 1557 1081 156 279 16 chr5 127470271 127470590 -25066669 + MTD LTR MaLR 3 405 -14 9 1557 405 336 69 7 chr5 127470687 127470975 -25066284 - MER113 DNA MER1_type -31 490 185 9 1557 2907 186 13 7 chr5 127471615 127472156 -25065103 + RMER15 LTR ERVL 1 544 -31 9 1557 360 341 117 36 chr5 127472219 127472441 -25064818 + B4A SINE B4 47 286 -6 9 1557 1089 265 43 16 chr5 127473989 127474292 -25062967 - MTEb LTR MaLR 0 379 69 9 1557 21 0 0 0 chr5 127474636 127474657 -25062602 + AT_rich Low_complexity Low_complexity 1 21 0 9 1557 476 362 33 33 chr5 127474978 127475252 -25062007 + B4A SINE B4 8 281 -11 9 1557 291 233 101 0 chr5 127475365 127475464 -25061795 + L1MB5 LINE L1 5665 5772 -412 9 1557 321 321 14 35 chr5 127475491 127475633 -25061626 + L1MB5 LINE L1 5835 5973 -201 9 1557 387 105 0 0 chr5 127475694 127475751 -25061508 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 9 1557 307 246 145 16 chr5 127475752 127475876 -25061383 - ORR1E LTR MaLR -67 303 164 9 1557 479 137 21 0 chr5 127475926 127476021 -25061238 + GA-rich Low_complexity Low_complexity 1 97 0 9 1557 668 229 26 32 chr5 127476021 127476210 -25061049 - ORR1E LTR MaLR -169 190 3 9 1557 652 286 20 55 chr5 127476300 127476648 -25060611 + RLTR15 LTR ERVK 3 338 -21 9 1557 516 162 8 10 chr5 127476936 127477058 -25060201 - ORR1B1 LTR MaLR -240 154 1 9 1557 1137 165 4 34 chr5 127477058 127477295 -25059964 + RLTR28 LTR ERVL 265 494 -30 9 1557 375 83 0 0 chr5 127477436 127477496 -25059763 + (T)n Simple_repeat Simple_repeat 1 60 0 9 1557 566 248 0 28 chr5 127478358 127478503 -25058756 - ID_B1 SINE B4 -8 216 76 9 1557 180 0 0 0 chr5 127478532 127478552 -25058707 + (TG)n Simple_repeat Simple_repeat 2 21 0 9 1557 244 176 98 0 chr5 127478554 127478605 -25058654 - RSINE1 SINE B4 -51 114 59 9 1557 24 0 0 0 chr5 127479540 127479564 -25057695 + AT_rich Low_complexity Low_complexity 1 24 0 9 1557 670 286 38 38 chr5 127479875 127480086 -25057173 + B4A SINE B4 9 219 -73 9 1557 589 288 30 5 chr5 127480267 127480466 -25056793 - MER2 DNA MER2_type -39 306 103 9 1557 563 335 33 133 chr5 127480477 127480928 -25056331 + MTC LTR MaLR 2 407 -14 9 1557 469 265 18 22 chr5 127480939 127481102 -25056157 - L1M2 LINE L1 -559 5732 5569 9 1557 1096 110 61 0 chr5 127481106 127481270 -25055989 + B2_Mm2 SINE B2 5 178 -17 9 1557 1264 302 96 53 chr5 127481612 127482329 -25054930 + Lx8 LINE L1 6694 7441 -32 9 1557 369 303 22 22 chr5 127482363 127482498 -25054761 + RLTR11A LTR ERVK 388 522 -6 9 1557 481 301 75 42 chr5 127483177 127483416 -25053843 - MER110 LTR ERV1 -244 247 1 9 1557 214 234 0 0 chr5 127484426 127484473 -25052786 + GA-rich Low_complexity Low_complexity 1 47 0 9 1557 844 258 37 138 chr5 127484684 127485062 -25052197 - MTE2b LTR MaLR -31 348 9 9 1557 2296 84 12 64 chr5 127485095 127485440 -25051819 + ORR1A2 LTR MaLR 1 327 0 9 1557 187 275 66 0 chr5 127485587 127485678 -25051581 - L2 LINE L2 -1246 2173 2077 9 1557 621 149 207 18 chr5 127485931 127486095 -25051164 - Lx9 LINE L1 -7 7637 7443 9 1557 483 313 11 27 chr5 127486096 127486280 -25050979 - B3A SINE B2 -16 182 2 9 1557 917 241 15 0 chr5 127486611 127486814 -25050445 - B3 SINE B2 -5 211 6 9 1557 288 202 0 62 chr5 127487812 127487877 -25049382 - ORR1D1 LTR MaLR -288 82 21 9 1557 35914 26 29 7 chr5 127488009 127493051 -25044208 + L1Md_T LINE L1 443 5586 -297 9 1557 8561 33 2 0 chr5 127493051 127494045 -25043214 + L1Md_T LINE L1 5587 6582 0 9 1557 441 0 0 0 chr5 127494445 127494494 -25042765 + (TC)n Simple_repeat Simple_repeat 2 50 0 9 1557 351 0 0 0 chr5 127494494 127494532 -25042727 + (TG)n Simple_repeat Simple_repeat 2 40 0 9 1557 693 267 0 20 chr5 127494537 127494690 -25042569 - B3A SINE B2 -48 150 1 9 1557 241 328 17 33 chr5 127495723 127495843 -25041416 - MIR SINE MIR -21 241 124 9 1557 209 57 29 0 chr5 127495845 127495880 -25041379 + (CAAAAA)n Simple_repeat Simple_repeat 3 38 0 9 1557 934 278 85 54 chr5 127496171 127496581 -25040678 + Lx8 LINE L1 6800 7222 -251 9 1557 276 30 0 0 chr5 127497402 127497435 -25039824 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1557 199 123 17 34 chr5 127497484 127497543 -25039716 + (CAGAGA)n Simple_repeat Simple_repeat 2 59 0 9 1557 480 99 0 0 chr5 127498295 127498366 -25038893 + (GGGA)n Simple_repeat Simple_repeat 2 72 0 9 1557 3195 143 105 40 chr5 127498841 127499060 -25038199 - RMER6C LTR ERVK 0 690 462 9 1557 744 12 0 0 chr5 127499060 127499145 -25038114 + (TTC)n Simple_repeat Simple_repeat 1 85 0 9 1557 1026 121 0 0 chr5 127499148 127499289 -25037970 - B1_Mus1 SINE Alu -7 141 1 9 1557 3195 143 105 40 chr5 127499289 127499713 -25037546 - RMER6C LTR ERVK -229 461 1 9 1557 1219 255 69 13 chr5 127500438 127500815 -25036444 - MTD LTR MaLR 0 419 22 1 1557 325 220 22 0 chr5 127501148 127501239 -25036020 + (TCTG)n Simple_repeat Simple_repeat 4 96 0 2 1557 405 0 0 0 chr5 127501250 127501295 -25035964 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1557 184 211 21 10 chr5 127501647 127501743 -25035516 + (TCTG)n Simple_repeat Simple_repeat 4 100 0 4 1557 405 0 0 0 chr5 127501754 127501799 -25035460 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1557 189 0 0 0 chr5 127501910 127501931 -25035328 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 6 1557 227 73 0 47 chr5 127502045 127502088 -25035171 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 7 1557 818 183 60 96 chr5 127502419 127502637 -25034622 - B3 SINE B2 -5 211 2 8 1557 958 185 157 15 chr5 127504147 127504345 -25032914 - URR1A DNA MER1_type 0 226 1 9 1557 483 18 0 0 chr5 127504554 127504610 -25032649 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1557 749 214 56 56 chr5 127504954 127505152 -25032107 + B3A SINE B2 1 198 0 1 1557 1134 197 34 0 chr5 127505160 127505368 -25031891 + B3 SINE B2 2 216 0 1 1557 1975 166 52 81 chr5 127506338 127506744 -25030515 + ORR1B1 LTR MaLR 1 394 0 1 1557 584 286 0 98 chr5 127506772 127506966 -25030293 - B3A SINE B2 -8 187 13 1 1557 538 198 0 62 chr5 127506966 127507079 -25030180 + MTD LTR MaLR 178 283 -136 1 1557 271 349 44 28 chr5 127507165 127507345 -25029914 - MER57D LTR ERV1 -47 364 182 1 1557 39 22 0 0 chr5 127508558 127508604 -25028655 + AT_rich Low_complexity Low_complexity 1 46 0 1 1557 579 299 81 0 chr5 127509397 127509618 -25027641 + L1MA4 LINE L1 5658 5896 -404 1 1557 572 181 119 8 chr5 127510022 127510156 -25027103 + B3 SINE B2 1 149 -67 1 1557 207 100 0 0 chr5 127510604 127510634 -25026625 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1557 254 258 0 57 chr5 127510650 127510720 -25026539 - B3A SINE B2 -69 129 64 2 1557 677 149 0 34 chr5 127510851 127510969 -25026290 - PB1D9 SINE Alu -2 118 5 2 1557 2576 232 121 44 chr5 127511664 127512430 -25024829 - Lx7 LINE L1 0 7696 6872 2 1557 328 99 99 0 chr5 127512446 127512557 -25024702 + (TATG)n Simple_repeat Simple_repeat 4 125 0 2 1557 403 312 93 66 chr5 127512634 127512891 -25024368 - B4A SINE B4 -19 273 10 2 1557 1584 180 16 29 chr5 127513972 127514281 -25022978 - Lx9 LINE L1 -394 7250 6946 2 1557 1363 189 96 12 chr5 127514294 127514637 -25022622 + Lx9 LINE L1 7270 7641 -3 2 1557 2279 275 66 54 chr5 127515450 127516268 -25020991 + Lx8 LINE L1 6644 7471 -2 2 1557 930 259 14 25 chr5 127517483 127517526 -25019733 - RMER15 LTR ERVL 0 575 532 2 1557 432 0 0 0 chr5 127517526 127517574 -25019685 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1557 930 259 14 25 chr5 127517574 127517807 -25019452 - RMER15 LTR ERVL -44 531 302 2 1557 234 244 0 0 chr5 127518023 127518085 -25019174 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1557 456 67 0 0 chr5 127518247 127518307 -25018952 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1557 390 148 12 24 chr5 127518315 127518398 -25018861 - ID_B1 SINE B4 -18 206 125 3 1557 1950 167 137 11 chr5 127519404 127519870 -25017389 + RMER15 LTR ERVL 27 551 -24 3 1557 510 17 0 0 chr5 127520174 127520233 -25017026 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 1557 924 212 119 0 chr5 127520925 127521118 -25016141 - B3 SINE B2 0 216 1 3 1557 363 23 0 0 chr5 127521217 127521261 -25015998 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1557 667 236 137 0 chr5 127522182 127522364 -25014895 + B3 SINE B2 5 211 -5 3 1557 1440 258 22 8 chr5 127522687 127523051 -25014208 + MTE2b LTR MaLR 1 369 -10 3 1557 393 22 0 0 chr5 127523343 127523389 -25013870 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1557 933 182 72 15 chr5 127523577 127523772 -25013487 + B3 SINE B2 1 206 -10 4 1557 396 0 0 0 chr5 127524601 127524645 -25012614 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1557 1033 135 162 30 chr5 127525714 127525912 -25011347 - URR1B DNA MER1_type -1 224 1 4 1557 22 0 0 0 chr5 127525983 127526005 -25011254 + AT_rich Low_complexity Low_complexity 1 22 0 4 1557 361 327 9 0 chr5 127526066 127526282 -25010977 + G-rich Low_complexity Low_complexity 1 217 0 4 1557 1613 42 5 0 chr5 127526552 127526743 -25010516 - B2_Mm1t SINE B2 -1 192 1 4 1557 1253 206 188 18 chr5 127528017 127528357 -25008902 + MTD LTR MaLR 18 415 -4 4 1557 764 182 15 0 chr5 127528675 127528812 -25008447 + B1_Mur1 SINE Alu 5 143 -6 4 1557 477 0 0 0 chr5 127528943 127528996 -25008263 + (TC)n Simple_repeat Simple_repeat 2 54 0 4 1557 324 48 0 0 chr5 127528996 127529037 -25008222 + (TG)n Simple_repeat Simple_repeat 1 42 0 4 1557 380 293 8 8 chr5 127529625 127529749 -25007510 + L1MB7 LINE L1 5850 5973 -211 5 1557 550 150 17 0 chr5 127530204 127530324 -25006935 + (TCTA)n Simple_repeat Simple_repeat 3 124 0 5 1557 261 213 54 23 chr5 127530341 127530471 -25006788 + (TCTA)n Simple_repeat Simple_repeat 3 136 0 5 1557 507 17 0 0 chr5 127531245 127531305 -25005954 + (TC)n Simple_repeat Simple_repeat 1 60 0 5 1557 213 65 0 0 chr5 127531315 127531346 -25005913 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 5 1557 207 0 0 0 chr5 127531378 127531401 -25005858 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 5 1557 499 259 14 41 chr5 127531602 127531747 -25005512 + B3A SINE B2 57 197 -1 5 1557 683 308 72 8 chr5 127532663 127532925 -25004334 + B4A SINE B4 8 286 -6 5 1558 274 309 0 0 chr5 127534518 127534586 -25002673 - ID4_ SINE ID -13 70 3 5 1558 423 250 29 9 chr5 127534757 127534862 -25002397 + RSINE1 SINE B4 57 163 -2 5 1558 198 0 0 0 chr5 127536529 127536551 -25000708 + (A)n Simple_repeat Simple_repeat 1 22 0 5 1558 729 237 20 51 chr5 127537156 127537352 -24999907 - B3A SINE B2 -8 190 1 6 1558 220 329 12 24 chr5 127538077 127538161 -24999098 + B4A SINE B4 10 92 -200 6 1558 277 300 0 0 chr5 127538278 127538358 -24998901 + B3A SINE B2 71 150 -48 6 1558 220 312 13 0 chr5 127538497 127538574 -24998685 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1558 385 328 82 39 chr5 127539705 127539911 -24997348 - B4 SINE B4 -20 272 58 6 1558 577 277 112 39 chr5 127540127 127540412 -24996847 - MER74A LTR ERVL -251 307 2 6 1558 1587 251 44 39 chr5 127540805 127541287 -24995972 + Lx8 LINE L1 6990 7473 0 6 1558 423 0 0 0 chr5 127542642 127542689 -24994570 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1558 499 323 0 0 chr5 127542689 127542813 -24994446 - RSINE1 SINE B4 -41 124 1 6 1558 21 0 0 0 chr5 127542813 127542834 -24994425 + AT_rich Low_complexity Low_complexity 1 21 0 6 1558 910 256 44 18 chr5 127543388 127543662 -24993597 - ORR1E LTR MaLR -78 281 1 7 1558 329 282 0 0 chr5 127544824 127544909 -24992350 + PB1D7 SINE Alu 35 119 -1 7 1558 378 0 0 0 chr5 127544909 127544951 -24992308 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1558 315 0 0 0 chr5 127545013 127545048 -24992211 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 7 1558 264 341 73 0 chr5 127545095 127545218 -24992041 - ID_B1 SINE B4 -6 218 87 7 1558 770 172 7 40 chr5 127545951 127546102 -24991157 + B1_Mur3 SINE Alu 2 147 -2 7 1558 315 179 14 29 chr5 127546254 127546323 -24990936 - Lx8 LINE L1 -6 7467 7400 7 1558 458 136 12 0 chr5 127546358 127546439 -24990820 + (TCCA)n Simple_repeat Simple_repeat 4 85 0 7 1558 1229 257 60 9 chr5 127546439 127546773 -24990486 - Lx8 LINE L1 -146 7327 6977 7 1558 468 0 0 0 chr5 127546779 127546831 -24990428 + (TC)n Simple_repeat Simple_repeat 2 53 0 7 1558 566 62 42 0 chr5 127546831 127546926 -24990333 + (TG)n Simple_repeat Simple_repeat 1 100 0 7 1558 380 177 28 28 chr5 127546956 127547136 -24990123 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1558 241 135 39 39 chr5 127547166 127547243 -24990016 + (TATG)n Simple_repeat Simple_repeat 1 77 0 8 1558 1048 235 39 31 chr5 127547243 127547529 -24989730 - Lx8 LINE L1 -504 6969 6682 7 1558 438 20 0 0 chr5 127547835 127547886 -24989373 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1558 467 291 43 0 chr5 127547886 127548003 -24989256 - RSINE1 SINE B4 -41 124 3 8 1558 286 297 33 92 chr5 127548129 127548281 -24988978 - ID_B1 SINE B4 -2 222 80 8 1558 357 62 0 0 chr5 127549095 127549143 -24988116 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1558 724 286 12 0 chr5 127549144 127549315 -24987944 - B3A SINE B2 -23 175 3 8 1558 1444 234 56 17 chr5 127549767 127549937 -24987322 + ORR1D1 LTR MaLR 1 169 -205 8 1558 600 111 0 0 chr5 127549937 127550027 -24987232 + (TCTG)n Simple_repeat Simple_repeat 3 92 0 8 1558 1444 234 56 17 chr5 127550027 127550216 -24987043 + ORR1D1 LTR MaLR 170 374 0 8 1558 417 20 0 0 chr5 127551193 127551243 -24986016 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1558 369 0 0 0 chr5 127551524 127551565 -24985694 + (TG)n Simple_repeat Simple_repeat 1 41 0 8 1558 359 217 0 0 chr5 127551680 127551749 -24985510 - MTEa LTR MaLR -305 74 6 9 1558 338 238 108 89 chr5 127552262 127552419 -24984840 - B3A SINE B2 0 216 57 9 1558 378 196 35 105 chr5 127552438 127552552 -24984707 + MTEa LTR MaLR 164 269 -110 9 1558 577 265 47 8 chr5 127552530 127552721 -24984538 + MTEa LTR MaLR 159 378 -1 9 1558 828 177 8 39 chr5 127552857 127553112 -24984147 + CT-rich Low_complexity Low_complexity 1 246 0 9 1558 206 95 24 0 chr5 127553811 127553853 -24983406 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 9 1558 332 260 170 0 chr5 127554152 127554252 -24983007 - B3 SINE B2 -9 207 91 9 1558 216 0 0 0 chr5 127554756 127554780 -24982479 + (A)n Simple_repeat Simple_repeat 1 24 0 9 1558 401 293 94 19 chr5 127555732 127555892 -24981367 + Lx8 LINE L1 6922 7093 -380 9 1558 751 221 113 62 chr5 127555922 127556178 -24981081 + Lx8 LINE L1 7203 7471 -2 9 1558 583 259 74 26 chr5 127556209 127556365 -24980894 + B3 SINE B2 5 166 -50 9 1558 372 22 0 0 chr5 127556365 127556410 -24980849 + (TC)n Simple_repeat Simple_repeat 1 45 0 9 1558 583 259 74 26 chr5 127556410 127556422 -24980837 + B3 SINE B2 167 180 -36 9 1558 402 21 0 0 chr5 127556422 127556469 -24980790 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1558 583 259 74 26 chr5 127556469 127556489 -24980770 + B3 SINE B2 181 202 -14 9 1558 601 264 12 41 chr5 127557360 127557530 -24979729 + RSINE1 SINE B4 1 165 0 1 1558 332 133 0 16 chr5 127557545 127557606 -24979653 + (TAA)n Simple_repeat Simple_repeat 1 60 0 1 1558 548 314 64 43 chr5 127557891 127558124 -24979135 + B4A SINE B4 45 282 -10 1 1558 408 111 0 0 chr5 127558144 127558207 -24979052 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1558 610 333 45 38 chr5 127558229 127558494 -24978765 + B4A SINE B4 26 292 0 1 1558 316 399 0 0 chr5 127558496 127558669 -24978590 + (CA)n Simple_repeat Simple_repeat 1 173 0 1 1558 387 0 0 0 chr5 127558866 127558909 -24978350 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1558 432 302 106 74 chr5 127558922 127559205 -24978054 - B4A SINE B4 0 292 1 1 1558 230 309 0 0 chr5 127559309 127559364 -24977895 + B4 SINE B4 27 81 -211 1 1558 257 240 144 38 chr5 127559365 127559525 -24977734 - L1MB2 LINE L1 -58 6113 5937 1 1558 592 252 0 22 chr5 127560495 127560633 -24976626 + RSINE1 SINE B4 2 136 -29 1 1558 499 221 0 34 chr5 127561032 127561149 -24976110 + MTEa LTR MaLR 265 377 -2 1 1558 1629 205 95 11 chr5 127561579 127561958 -24975301 + MTD LTR MaLR 1 411 -8 1 1558 1565 190 76 27 chr5 127562666 127563034 -24974225 - MTD LTR MaLR -33 386 1 1 1558 1592 190 99 3 chr5 127564392 127564746 -24972513 + MTD LTR MaLR 18 405 -14 1 1558 338 274 9 0 chr5 127564876 127564982 -24972277 + MLT1D LTR MaLR 135 241 -264 1 1558 213 182 0 0 chr5 127565905 127565960 -24971299 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1558 317 203 8 45 chr5 127565990 127566124 -24971135 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 1 1558 222 286 0 0 chr5 127566130 127566256 -24971003 + (CA)n Simple_repeat Simple_repeat 1 126 0 1 1558 399 332 156 18 chr5 127566664 127567099 -24970160 + L1M5 LINE L1 3011 3505 -2641 1 1558 459 0 0 0 chr5 127567099 127567150 -24970109 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1558 265 289 12 24 chr5 127567193 127567278 -24969981 + L1M5 LINE L1 4588 4671 -1475 1 1558 255 232 0 28 chr5 127567423 127567494 -24969765 + B4A SINE B4 1 69 -223 1 1558 2259 165 31 13 chr5 127568071 127568542 -24968717 + RLTR11A LTR ERVK 8 513 -15 1 1558 2460 110 96 5 chr5 127568618 127569003 -24968256 + RLTR9B2 LTR ERVK 1 420 0 1 1558 33643 72 5 4 chr5 127569936 127575129 -24962130 + L1Md_F2 LINE L1 387 5586 -297 1 1558 8407 37 1 0 chr5 127575130 127576112 -24961147 + L1Md_F2 LINE L1 5588 6570 -12 1 1558 774 313 58 60 chr5 127576283 127576803 -24960456 + L1MB8 LINE L1 5646 6164 -14 1 1558 920 95 0 7 chr5 127576820 127576958 -24960301 + (TAGA)n Simple_repeat Simple_repeat 3 139 0 1 1558 615 234 0 16 chr5 127577112 127577238 -24960021 + B3A SINE B2 2 125 -73 1 1558 219 69 0 0 chr5 127577239 127577268 -24959991 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1 1558 278 257 81 18 chr5 127577350 127577461 -24959798 + Lx9 LINE L1 7387 7504 -140 1 1558 259 217 43 11 chr5 127577465 127577558 -24959701 + (TTATA)n Simple_repeat Simple_repeat 5 100 0 1 1558 366 222 14 0 chr5 127578338 127578410 -24958849 - ID_B1 SINE B4 -34 190 118 1 1558 585 0 0 0 chr5 127579797 127579862 -24957397 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1558 221 127 36 0 chr5 127579863 127579918 -24957341 + (TCTG)n Simple_repeat Simple_repeat 2 58 0 1 1558 519 211 13 4 chr5 127579957 127580197 -24957062 + CT-rich Low_complexity Low_complexity 1 242 0 1 1558 1136 152 28 23 chr5 127580956 127581120 -24956139 + URR1A DNA MER1_type 11 169 -57 1 1558 306 0 0 0 chr5 127581120 127581154 -24956105 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1558 1136 152 28 23 chr5 127581154 127581204 -24956055 + URR1A DNA MER1_type 170 224 -2 1 1558 619 270 101 7 chr5 127581887 127582106 -24955153 - B4 SINE B4 -33 259 24 1 1558 392 315 9 0 chr5 127583271 127583382 -24953877 + PB1D10 SINE Alu 1 112 -5 1 1558 260 320 52 0 chr5 127583852 127583949 -24953310 - MLT1D LTR MaLR -367 138 37 1 1558 318 307 20 0 chr5 127584175 127584276 -24952983 - ORR1E LTR MaLR -256 103 1 1 1558 274 329 14 0 chr5 127584479 127584552 -24952707 + RSINE1 SINE B4 92 165 0 1 1558 32 43 0 0 chr5 127584595 127584641 -24952618 + AT_rich Low_complexity Low_complexity 1 46 0 1 1558 1160 284 0 64 chr5 127585634 127586041 -24951218 - Lx9 LINE L1 -252 7392 7012 1 1558 413 319 0 0 chr5 127586082 127586220 -24951039 - Lx9 LINE L1 -635 7009 6872 1 1558 383 301 45 52 chr5 127586773 127586917 -24950342 + ORR1D2 LTR MaLR 4 149 -210 1 1558 393 22 0 0 chr5 127586917 127586963 -24950296 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1558 436 132 0 0 chr5 127587006 127587074 -24950185 + ORR1D2 LTR MaLR 295 362 -8 1 1558 828 230 80 1 chr5 127588327 127588575 -24948684 + MTD LTR MaLR 1 308 -113 1 1558 428 245 76 14 chr5 127589524 127589669 -24947590 - RMER15 LTR ERVL -70 505 352 1 1558 192 40 0 0 chr5 127590426 127590451 -24946808 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1558 524 283 0 33 chr5 127590774 127590924 -24946335 + RSINE1 SINE B4 21 165 0 1 1558 358 303 138 49 chr5 127590979 127591008 -24946251 - MT2A LTR ERVL -8 593 565 1 1558 819 50 25 0 chr5 127591008 127591129 -24946130 + (TAGA)n Simple_repeat Simple_repeat 3 126 0 1 1558 893 219 213 121 chr5 127591129 127591556 -24945703 - MT2A LTR ERVL -37 564 1 1 1558 439 229 85 0 chr5 127592282 127592400 -24944859 + B1F2 SINE Alu 16 143 -6 1 1558 1369 237 73 13 chr5 127592478 127592868 -24944391 + MTD LTR MaLR 5 405 -14 1 1558 182 37 0 36 chr5 127593093 127593121 -24944138 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 1 1558 423 304 51 38 chr5 127593911 127593938 -24943321 - CYRA11_Mm Unknown Y-chromosome -200 417 179 1 1558 1173 168 38 0 chr5 127593938 127594147 -24943112 + URR1B DNA MER1_type 1 217 -8 1 1558 1578 38 16 0 chr5 127594411 127594597 -24942662 + B2_Mm1a SINE B2 1 189 -4 1 1558 696 229 74 55 chr5 127595147 127595364 -24941895 - ID_B1 SINE B4 0 224 4 1 1558 2253 147 68 15 chr5 127595596 127595996 -24941263 + MTC LTR MaLR 1 421 0 1 1558 310 118 0 0 chr5 127596639 127596690 -24940569 - B3A SINE B2 -146 52 2 1 1558 1340 222 158 3 chr5 127596773 127597134 -24940125 - MTD LTR MaLR 0 419 3 1 1558 742 155 9 0 chr5 127597213 127597427 -24939832 + (TG)n Simple_repeat Simple_repeat 1 216 0 1 1558 576 174 6 17 chr5 127597468 127597649 -24939610 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1558 666 189 0 0 chr5 127597677 127597857 -24939402 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1558 735 179 0 0 chr5 127597886 127598065 -24939194 + (TG)n Simple_repeat Simple_repeat 1 179 0 1 1558 303 216 8 211 chr5 127598078 127598201 -24939058 + MTEa LTR MaLR 218 315 -64 1 1558 6037 33 3 0 chr5 127598262 127598966 -24938293 - L1Md_A LINE L1 -3 6579 5874 1 1558 8710 16 4 5 chr5 127598966 127599981 -24937278 + L1_Mm LINE L1 3301 4314 -1569 1 1558 216 0 0 0 chr5 127600159 127600183 -24937076 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1558 966 160 155 0 chr5 127600194 127600381 -24936878 + B3 SINE B2 1 216 0 1 1558 1257 128 103 5 chr5 127600499 127600703 -24936556 - URR1A DNA MER1_type 0 226 3 1 1558 1479 228 32 6 chr5 127600715 127601059 -24936200 + MTEa LTR MaLR 27 379 0 1 1558 633 27 0 0 chr5 127601609 127601684 -24935575 + (GA)n Simple_repeat Simple_repeat 1 75 0 1 1558 267 332 0 5 chr5 127602051 127602271 -24934988 + (TG)n Simple_repeat Simple_repeat 1 218 0 1 1558 1542 184 2 136 chr5 127603316 127603743 -24933516 - ORR1C1 LTR MaLR -4 374 5 1 1558 216 0 0 0 chr5 127603881 127603905 -24933354 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1558 356 356 22 6 chr5 127604715 127604893 -24932366 - MER34 LTR ERV1 -39 503 323 1 1558 270 81 0 0 chr5 127605016 127605053 -24932206 + (CAT)n Simple_repeat Simple_repeat 3 39 0 1 1558 495 0 0 0 chr5 127605066 127605121 -24932138 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1558 255 331 114 47 chr5 127605148 127605402 -24931857 - B4A SINE B4 -18 274 4 1 1558 249 255 139 24 chr5 127605591 127605756 -24931503 - Kanga2_a DNA Tc2 -310 578 395 1 1558 920 305 67 31 chr5 127605934 127606320 -24930939 + MTD LTR MaLR 1 400 -19 1 1558 259 284 15 0 chr5 127606325 127606392 -24930867 - B1_Mus2 SINE Alu -77 70 3 1 1558 2218 176 16 30 chr5 127606392 127606819 -24930440 + MTC LTR MaLR 1 421 0 1 1558 548 294 48 24 chr5 127606849 127607058 -24930201 - B3 SINE B2 -1 215 2 1 1558 1116 0 0 0 chr5 127607594 127607718 -24929541 + (TCTCCC)n Simple_repeat Simple_repeat 4 127 0 1 1558 219 179 0 0 chr5 127607718 127607785 -24929474 + (TG)n Simple_repeat Simple_repeat 1 67 0 1 1558 351 0 0 0 chr5 127608210 127608249 -24929010 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1558 818 207 85 5 chr5 127608453 127608652 -24928607 - B3 SINE B2 -1 215 1 1 1558 1020 245 88 15 chr5 127609031 127609292 -24927967 + B4 SINE B4 2 281 -11 1 1558 282 56 0 0 chr5 127609310 127609346 -24927913 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1558 257 326 132 7 chr5 127610029 127610165 -24927094 - MER5A DNA MER1_type 0 189 37 1 1558 436 306 66 19 chr5 127610234 127610447 -24926812 + L2 LINE L2 2689 2911 -508 1 1558 228 233 0 0 chr5 127611132 127611175 -24926084 - L1_Mur1 LINE L1 -1816 4070 4028 1 1558 26 0 0 0 chr5 127611469 127611495 -24925764 + AT_rich Low_complexity Low_complexity 1 26 0 1 1558 896 225 11 0 chr5 127611508 127611686 -24925573 - B3A SINE B2 -18 180 1 1 1558 665 256 60 5 chr5 127611809 127611994 -24925265 - ID_B1 SINE B4 -3 221 27 1 1558 252 0 0 0 chr5 127612188 127612216 -24925043 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1558 456 235 142 8 chr5 127612327 127612447 -24924812 + RSINE1 SINE B4 7 142 -23 1 1558 180 0 0 0 chr5 127612448 127612468 -24924791 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1558 315 0 0 0 chr5 127612468 127612502 -24924757 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1558 358 315 97 14 chr5 127613251 127613396 -24923863 + MER91B DNA Tip100 2 158 -32 2 1558 30 0 0 0 chr5 127613467 127613497 -24923762 + AT_rich Low_complexity Low_complexity 1 30 0 2 1558 1079 245 50 107 chr5 127613637 127614039 -24923220 + MTE2a LTR MaLR 1 379 0 2 1558 791 194 30 18 chr5 127614237 127614405 -24922854 - MTE2b LTR MaLR -6 373 204 2 1558 570 303 20 0 chr5 127615389 127615541 -24921718 + RSINE1 SINE B4 3 157 -8 2 1558 1703 188 57 14 chr5 127615677 127616027 -24921232 - MTC LTR MaLR 0 421 57 2 1558 1059 101 41 17 chr5 127616012 127616184 -24921075 - B2_Mm2 SINE B2 -6 189 14 2 1558 586 176 9 0 chr5 127616181 127616289 -24920970 - MTE2b LTR MaLR -312 109 1 2 1558 1088 128 128 39 chr5 127617257 127617461 -24919798 - URR1B DNA MER1_type -3 222 1 2 1558 2017 176 107 33 chr5 127617475 127617963 -24919296 + RLTR28 LTR ERVL 1 524 0 2 1558 1657 156 53 28 chr5 127618445 127618897 -24918362 - RMER17C LTR ERVK -519 439 16 2 1558 1231 201 0 0 chr5 127619409 127619623 -24917636 + B3 SINE B2 3 216 0 2 1558 25 31 0 0 chr5 127619685 127619717 -24917542 + AT_rich Low_complexity Low_complexity 1 32 0 2 1558 502 322 34 61 chr5 127619782 127620079 -24917180 + B4A SINE B4 2 290 -2 2 1558 189 282 0 0 chr5 127620131 127620216 -24917043 + (CA)n Simple_repeat Simple_repeat 1 85 0 2 1558 647 104 9 0 chr5 127621289 127621395 -24915864 + (TG)n Simple_repeat Simple_repeat 2 108 0 2 1558 369 0 0 0 chr5 127621649 127621690 -24915569 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1558 736 266 55 0 chr5 127621757 127621956 -24915303 + B3 SINE B2 1 210 -6 2 1558 286 303 11 0 chr5 127622079 127622168 -24915091 + MER113A DNA MER1_type 108 197 -117 2 1558 932 258 91 33 chr5 127622418 127622694 -24914565 + B4A SINE B4 1 292 0 2 1558 980 219 36 0 chr5 127622744 127622936 -24914323 + B3 SINE B2 1 199 -17 2 1558 243 0 0 0 chr5 127623053 127623080 -24914179 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 2 1558 433 333 7 11 chr5 127623307 127623490 -24913769 + MLT1E2 LTR MaLR 340 521 -103 2 1558 267 174 0 0 chr5 127624162 127624208 -24913051 + ORR1D2 LTR MaLR 1 46 -324 2 1558 210 130 0 80 chr5 127624274 127624324 -24912935 + T-rich Low_complexity Low_complexity 2 47 0 2 1558 395 149 23 0 chr5 127624333 127624420 -24912839 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 2 1558 429 36 0 0 chr5 127624429 127624484 -24912775 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1558 382 270 0 0 chr5 127624514 127624603 -24912656 - B3A SINE B2 -74 124 36 2 1558 417 138 0 0 chr5 127624654 127624734 -24912525 + (TGG)n Simple_repeat Simple_repeat 3 82 0 2 1558 496 306 74 64 chr5 127625210 127625507 -24911752 + LTR16A LTR ERVL 33 332 -119 2 1558 575 326 37 31 chr5 127626479 127626802 -24910457 - MER68 LTR ERVL -5 558 234 2 1558 226 379 0 21 chr5 127627439 127627536 -24909723 + MER102b DNA MER1_type 128 222 -119 2 1558 302 179 36 0 chr5 127627874 127627930 -24909329 + B4 SINE B4 5 62 -230 2 1558 1173 183 6 70 chr5 127627978 127628290 -24908969 + RMER16 LTR ERVK 242 533 0 2 1558 802 278 5 28 chr5 127628297 127628512 -24908747 + B4 SINE B4 83 292 0 2 1558 240 143 0 0 chr5 127628551 127628593 -24908666 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1558 1014 181 133 24 chr5 127628696 127628906 -24908353 - RLTR20D LTR ERVK -335 233 1 2 1558 1942 143 56 46 chr5 127629106 127629159 -24908100 - ORR1C1 LTR MaLR -1 377 335 2 1558 867 35 35 0 chr5 127629159 127629275 -24907984 - L1Md_F2 LINE L1 -12 6570 6451 2 1558 1942 143 56 46 chr5 127629275 127629594 -24907665 - ORR1C1 LTR MaLR -44 334 1 2 1558 247 304 43 9 chr5 127629603 127629719 -24907540 - RMER15 LTR ERVL -119 456 337 2 1558 420 339 34 68 chr5 127629984 127630247 -24907012 + MER2 DNA MER2_type 91 344 -1 2 1558 1701 180 58 14 chr5 127632538 127632882 -24904377 - RLTR15 LTR ERVK 0 359 1 2 1558 329 285 49 0 chr5 127633092 127633215 -24904044 - L1MA4 LINE L1 -370 5930 5802 2 1558 3465 23 5 0 chr5 127633516 127633910 -24903349 - MTA_Mm LTR MaLR 0 396 1 2 1558 9086 42 4 1 chr5 127633910 127635005 -24902254 - MTA_Mm-int LTR MaLR 0 1098 1 2 1558 3465 23 5 0 chr5 127635005 127635399 -24901860 - MTA_Mm LTR MaLR 0 396 1 2 1558 572 208 24 0 chr5 127636887 127637012 -24900247 + B3A SINE B2 2 129 -69 2 1558 27 29 0 0 chr5 127637212 127637246 -24900013 + AT_rich Low_complexity Low_complexity 1 34 0 2 1558 381 176 16 23 chr5 127638368 127638496 -24898763 + GA-rich Low_complexity Low_complexity 3 129 0 2 1558 282 293 151 54 chr5 127638852 127639130 -24898129 + MLT1C LTR MaLR 99 403 -64 2 1558 204 321 0 0 chr5 127639273 127639326 -24897933 + C-rich Low_complexity Low_complexity 88 140 0 2 1558 464 247 22 52 chr5 127639791 127640030 -24897229 + GA-rich Low_complexity Low_complexity 1 231 0 2 1558 426 275 11 48 chr5 127640067 127640254 -24897005 + GA-rich Low_complexity Low_complexity 1 180 0 2 1558 920 215 14 60 chr5 127640991 127641209 -24896050 + B3 SINE B2 1 208 -8 2 1558 302 269 110 25 chr5 127641585 127641703 -24895556 + ID_B1 SINE B4 90 217 -7 2 1558 211 278 0 18 chr5 127641704 127641759 -24895500 + GA-rich Low_complexity Low_complexity 2 55 0 2 1558 666 262 85 41 chr5 127642188 127642506 -24894753 - MT2A LTR ERVL -3 530 199 2 1558 1420 246 26 11 chr5 127642775 127643124 -24894135 + ORR1E LTR MaLR 3 356 -3 2 1558 824 177 19 6 chr5 127643124 127643283 -24893976 + B3A SINE B2 8 168 -30 2 1558 381 93 0 0 chr5 127644694 127644748 -24892511 + (ATG)n Simple_repeat Simple_repeat 1 54 0 2 1558 922 247 89 11 chr5 127645005 127645275 -24891984 + B4A SINE B4 2 292 0 2 1558 226 219 27 14 chr5 127646035 127646109 -24891150 + A-rich Low_complexity Low_complexity 4 78 0 2 1558 1162 202 9 14 chr5 127646772 127646983 -24890276 + B3 SINE B2 1 210 -6 2 1558 1006 83 22 34 chr5 127647374 127647697 -24889562 + (CATATA)n Simple_repeat Simple_repeat 1 319 0 2 1558 980 158 12 6 chr5 127647697 127647863 -24889396 - B3 SINE B2 -49 167 1 2 1558 2774 155 31 27 chr5 127648651 127649047 -24888212 + RLTR11A LTR ERVK 4 398 -130 2 1558 3146 14 0 3 chr5 127649047 127649394 -24887865 - ORR1A0 LTR MaLR 0 346 1 2 1558 2774 155 31 27 chr5 127649394 127649450 -24887809 + RLTR11A LTR ERVK 399 458 -70 2 1558 495 0 0 0 chr5 127649450 127649505 -24887754 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1558 2774 155 31 27 chr5 127649505 127649574 -24887685 + RLTR11A LTR ERVK 459 528 0 2 1558 1573 201 41 6 chr5 127649793 127650108 -24887151 + MTD LTR MaLR 6 331 -88 2 1558 338 277 44 63 chr5 127650136 127650294 -24886965 + RMER15 LTR ERVL 329 483 -92 2 1558 400 333 41 26 chr5 127651122 127651316 -24885943 + RMER15 LTR ERVL 337 533 -42 2 1558 1379 194 300 31 chr5 127651521 127651974 -24885285 - RMER15 LTR ERVL 0 575 1 2 1558 1222 259 92 3 chr5 127652980 127653297 -24883962 + MTEa LTR MaLR 29 373 -6 2 1558 2253 102 3 61 chr5 127653473 127653819 -24883440 + ORR1A3 LTR MaLR 1 326 0 2 1558 316 332 94 5 chr5 127653824 127654027 -24883232 + MER89 LTR ERV1 337 557 -2 2 1558 513 342 20 47 chr5 127655055 127655307 -24881952 - B4A SINE B4 0 292 48 2 1558 7052 139 25 13 chr5 127655307 127656546 -24880713 + RLTR21 LTR ERVK 1 1254 -318 2 1558 527 213 12 23 chr5 127656565 127656738 -24880521 + (TATG)n Simple_repeat Simple_repeat 2 172 0 2 1558 2620 193 37 12 chr5 127656830 127657348 -24879911 - RLTR19B LTR ERVK 0 715 185 2 1558 1231 63 0 23 chr5 127657355 127657614 -24879645 + (CAGAA)n Simple_repeat Simple_repeat 1 252 0 2 1558 258 280 13 156 chr5 127657626 127657653 -24879606 + RLTR21 LTR ERVK 1202 1223 -181 2 1558 288 111 0 0 chr5 127657653 127657698 -24879561 + (TATG)n Simple_repeat Simple_repeat 4 48 0 2 1558 258 280 13 156 chr5 127657698 127657741 -24879518 + RLTR21 LTR ERVK 1224 1260 -144 2 1558 303 71 0 0 chr5 127657741 127657783 -24879476 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1558 330 228 14 155 chr5 127657783 127657948 -24879311 + RLTR21 LTR ERVK 1261 1572 0 2 1558 198 0 0 0 chr5 127658197 127658219 -24879040 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2 1558 228 316 25 0 chr5 127658579 127658658 -24878601 - MLT1J2 LTR MaLR -306 142 62 2 1558 947 197 81 36 chr5 127658815 127658842 -24878417 + ORR1D1 LTR MaLR 1 27 -347 2 1558 1730 155 91 87 chr5 127658842 127659281 -24877978 + BGLII_B LTR ERVK 1 441 0 2 1558 947 235 113 28 chr5 127659281 127659568 -24877691 + ORR1D1 LTR MaLR 25 357 -2 2 1558 1472 316 42 32 chr5 127659667 127660294 -24876965 - Lx8 LINE L1 -266 7207 6575 2 1558 250 246 14 0 chr5 127660403 127660472 -24876787 + CT-rich Low_complexity Low_complexity 2 71 0 2 1558 425 315 151 5 chr5 127660488 127660673 -24876586 - ID_B1 SINE B4 -9 215 4 2 1558 420 294 41 0 chr5 127660814 127660960 -24876299 + B4A SINE B4 2 153 -139 2 1558 339 299 11 11 chr5 127660961 127661049 -24876210 + RSINE1 SINE B4 78 165 0 2 1558 265 154 0 0 chr5 127661051 127661090 -24876169 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1558 665 227 0 11 chr5 127661091 127661269 -24875990 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 2 1558 353 288 0 0 chr5 127661269 127661349 -24875910 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 1558 535 229 15 15 chr5 127661349 127661629 -24875630 + (CATATA)n Simple_repeat Simple_repeat 1 280 0 2 1558 1658 176 47 16 chr5 127662154 127662519 -24874740 + MTD LTR MaLR 44 419 0 2 1558 503 118 12 0 chr5 127663049 127663134 -24874125 + (TCTCCC)n Simple_repeat Simple_repeat 3 88 0 2 1558 207 296 0 0 chr5 127663134 127663188 -24874071 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 2 1558 1128 192 27 0 chr5 127663679 127663903 -24873356 - MTEb LTR MaLR -6 373 144 2 1559 785 214 71 0 chr5 127664759 127664927 -24872332 - B3A SINE B2 -18 180 1 2 1559 374 259 0 12 chr5 127664933 127665019 -24872240 - PB1D7 SINE Alu -1 119 35 2 1559 745 281 73 18 chr5 127665030 127665065 -24872194 - RMER5 LTR ERV1 -12 522 488 2 1559 1912 168 61 66 chr5 127665065 127665461 -24871798 + ORR1B1 LTR MaLR 1 394 0 2 1559 745 281 73 18 chr5 127665461 127665697 -24871562 - RMER5 LTR ERV1 -47 487 236 2 1559 659 196 184 55 chr5 127665727 127665974 -24871285 - RMER4B LTR ERVK -23 588 343 2 1559 403 221 12 8 chr5 127665978 127666228 -24871031 + (CAG)n Simple_repeat Simple_repeat 1 251 0 3 1559 913 206 85 1 chr5 127666231 127666469 -24870790 - RMER4B LTR ERVK -198 268 1 2 1559 733 228 56 77 chr5 127666472 127666705 -24870554 - RMER5 LTR ERV1 -306 228 1 2 1559 1040 298 72 9 chr5 127667840 127668185 -24869074 - MTE2b LTR MaLR -10 369 3 3 1559 490 75 12 12 chr5 127669268 127669349 -24867910 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1559 507 239 175 7 chr5 127669374 127669517 -24867742 - B4A SINE B4 -72 220 54 3 1559 890 210 18 0 chr5 127669525 127669692 -24867567 - B3 SINE B2 -11 205 36 3 1559 393 264 107 22 chr5 127669692 127669870 -24867389 - L1MA5 LINE L1 -283 6017 5825 3 1559 1524 138 4 4 chr5 127670517 127670743 -24866516 + URR1A DNA MER1_type 1 226 0 3 1559 318 287 39 29 chr5 127670751 127670855 -24866404 - MLT1C LTR MaLR -298 169 65 3 1559 37 39 0 0 chr5 127671407 127671458 -24865801 + AT_rich Low_complexity Low_complexity 1 51 0 3 1559 306 0 0 0 chr5 127671640 127671674 -24865585 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 1559 525 55 0 0 chr5 127671674 127671746 -24865513 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1559 822 201 32 0 chr5 127671746 127671900 -24865359 - B3 SINE B2 -54 162 4 3 1559 288 0 0 0 chr5 127672610 127672642 -24864617 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1559 2538 198 68 2 chr5 127673436 127673936 -24863323 + MT2A LTR ERVL 1 533 0 3 1559 316 256 0 25 chr5 127674351 127674431 -24862828 + G-rich Low_complexity Low_complexity 1 78 0 3 1559 330 356 75 7 chr5 127674484 127674631 -24862628 + MLT1E2 LTR MaLR 308 464 -163 3 1559 861 163 0 14 chr5 127674864 127675007 -24862252 + B1_Mus2 SINE Alu 1 141 -6 3 1559 243 146 0 0 chr5 127675025 127675066 -24862193 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 3 1559 790 214 57 36 chr5 127675712 127675906 -24861353 - B3A SINE B2 0 198 1 3 1559 196 0 0 105 chr5 127675948 127675986 -24861273 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1559 327 241 176 22 chr5 127676184 127676320 -24860939 + MTEb LTR MaLR 55 211 -168 3 1559 293 242 5 23 chr5 127676365 127676454 -24860805 + MTEb LTR MaLR 269 361 -18 3 1559 508 278 195 14 chr5 127676648 127676863 -24860396 + B4A SINE B4 37 290 -2 3 1559 4163 72 2 0 chr5 127678800 127679324 -24857935 + L1_Mus1 LINE L1 6042 6566 -1 3 1559 758 204 82 13 chr5 127679374 127679533 -24857726 - B3 SINE B2 -46 170 1 3 1559 319 197 0 70 chr5 127679613 127679684 -24857575 + ID4_ SINE ID 3 68 -15 3 1559 495 102 0 0 chr5 127679688 127679776 -24857483 + (CA)n Simple_repeat Simple_repeat 2 89 0 3 1559 957 162 68 0 chr5 127679777 127679968 -24857291 - Lx9 LINE L1 -162 7482 7279 3 1559 373 244 24 0 chr5 127679981 127680063 -24857196 - B4A SINE B4 -199 93 10 3 1559 430 17 17 17 chr5 127680353 127680413 -24856846 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1559 242 310 115 19 chr5 127680609 127680772 -24856487 - L2c LINE L2 -181 3206 3028 3 1559 878 270 45 0 chr5 127681678 127681878 -24855381 + B4 SINE B4 12 220 -72 3 1559 332 257 29 10 chr5 127682636 127682738 -24854521 - MLT1D LTR MaLR 0 505 402 3 1559 422 274 62 44 chr5 127682783 127682943 -24854316 + RSINE1 SINE B4 3 165 0 3 1559 234 0 0 0 chr5 127683109 127683135 -24854124 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1559 333 0 0 0 chr5 127683135 127683171 -24854088 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 1559 221 0 35 0 chr5 127683269 127683298 -24853961 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3 1559 1444 239 103 27 chr5 127683462 127683909 -24853350 + Lx9 LINE L1 7164 7644 0 3 1559 192 343 65 36 chr5 127684410 127684549 -24852710 - MIR SINE MIR -60 202 60 3 1559 642 191 0 9 chr5 127684648 127684759 -24852500 + ID_B1 SINE B4 105 214 -10 3 1559 218 158 25 50 chr5 127684772 127684852 -24852407 + G-rich Low_complexity Low_complexity 3 80 0 3 1559 219 167 0 0 chr5 127684868 127684910 -24852349 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 3 1559 2062 211 143 20 chr5 127685019 127685570 -24851689 - RLTR17 LTR ERVK -73 619 1 3 1559 260 206 0 113 chr5 127685621 127685692 -24851567 + ID4 SINE ID 7 69 -14 3 1559 209 326 0 0 chr5 127686534 127686620 -24850639 + A-rich Low_complexity Low_complexity 1 86 0 3 1559 768 244 32 32 chr5 127686751 127686937 -24850322 + ID_B1 SINE B4 5 190 -34 3 1559 692 228 118 18 chr5 127686875 127687045 -24850214 - ORR1B1 LTR MaLR -26 368 182 3 1559 2132 76 4 0 chr5 127687047 127687324 -24849935 + ORR1A2 LTR MaLR 5 282 -45 3 1559 4171 57 0 4 chr5 127687324 127687866 -24849393 + L1Md_F2 LINE L1 5047 5586 -297 3 1559 8193 45 8 2 chr5 127687866 127688856 -24848403 + L1Md_F2 LINE L1 5587 6582 0 3 1559 464 36 0 0 chr5 127688858 127688913 -24848346 + ORR1A2 LTR MaLR 272 326 0 3 1559 690 157 150 44 chr5 127688913 127689070 -24848189 - ORR1B1 LTR MaLR -180 214 41 3 1559 222 171 0 0 chr5 127689120 127689161 -24848098 + GA-rich Low_complexity Low_complexity 4 44 0 3 1559 248 154 19 0 chr5 127689182 127689234 -24848025 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 3 1559 461 264 61 77 chr5 127689390 127689571 -24847688 - MER74B LTR ERVL -372 250 73 3 1559 768 215 133 5 chr5 127689640 127689836 -24847423 + B4A SINE B4 1 221 -71 3 1559 231 61 0 0 chr5 127689849 127689882 -24847377 + (CAAG)n Simple_repeat Simple_repeat 1 33 0 3 1559 1104 168 39 15 chr5 127689884 127690089 -24847170 + B3 SINE B2 1 210 -6 3 1559 1094 68 0 13 chr5 127690280 127690430 -24846829 - B1_Mus1 SINE Alu 0 148 1 3 1559 877 155 38 27 chr5 127690583 127690769 -24846490 + B2_Mm2 SINE B2 5 192 -3 3 1559 265 299 60 78 chr5 127690986 127691102 -24846157 - MLT1D LTR MaLR -133 372 259 3 1559 2126 142 93 40 chr5 127691625 127692022 -24845237 - MTC LTR MaLR -2 419 2 3 1559 180 0 0 0 chr5 127692663 127692683 -24844576 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 3 1559 24 0 0 0 chr5 127692697 127692721 -24844538 + AT_rich Low_complexity Low_complexity 1 24 0 3 1559 204 111 0 0 chr5 127692981 127693017 -24844242 + (G)n Simple_repeat Simple_repeat 1 36 0 3 1559 211 204 184 0 chr5 127693023 127693072 -24844187 - B4A SINE B4 -230 62 5 3 1559 1077 203 127 107 chr5 127693199 127693624 -24843635 - MT2A LTR ERVL -44 557 1 3 1559 227 54 0 26 chr5 127693963 127694001 -24843258 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 3 1559 207 143 82 0 chr5 127694511 127694560 -24842699 - MIRb SINE MIR -44 224 172 3 1559 1542 234 104 30 chr5 127694654 127695126 -24842133 - RMER5 LTR ERV1 -22 512 6 3 1559 366 23 0 0 chr5 127695336 127695379 -24841880 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1559 183 154 26 0 chr5 127695555 127695594 -24841665 + L2 LINE L2 2773 2812 -607 3 1559 1008 186 15 35 chr5 127696069 127696270 -24840989 + B3A SINE B2 1 197 -1 3 1559 342 0 0 0 chr5 127696378 127696416 -24840843 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1559 261 43 42 21 chr5 127697113 127697161 -24840098 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 3 1559 305 285 34 81 chr5 127698141 127698152 -24839107 - ORR1E LTR MaLR -2 377 368 3 1559 674 273 30 99 chr5 127698152 127698195 -24839064 - B3 SINE B2 0 216 190 3 1559 216 0 0 0 chr5 127698195 127698219 -24839040 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 1559 674 273 30 99 chr5 127698219 127698407 -24838852 - B3 SINE B2 -27 189 1 3 1559 538 269 36 51 chr5 127698407 127698694 -24838565 - ORR1E LTR MaLR -12 367 7 3 1559 188 247 300 11 chr5 127698852 127698942 -24838317 + MIRb SINE MIR 138 253 -15 3 1559 2281 61 2 175 chr5 127699373 127699768 -24837491 + ORR1A3 LTR MaLR 1 327 0 3 1559 11358 114 108 5 chr5 127699768 127701479 -24835780 + ORR1A3-int LTR MaLR 1 1885 -78 3 1559 387 0 0 0 chr5 127701479 127701522 -24835737 + (TTA)n Simple_repeat Simple_repeat 3 45 0 3 1559 11358 114 108 5 chr5 127701522 127701590 -24835669 + ORR1A3-int LTR MaLR 1886 1962 -1 3 1559 2363 98 3 0 chr5 127701590 127701907 -24835352 + ORR1A3 LTR MaLR 1 318 -8 3 1559 621 309 45 81 chr5 127702054 127702413 -24834846 - ORR1E LTR MaLR -8 351 6 3 1559 987 287 56 78 chr5 127702449 127702857 -24834402 - MTD LTR MaLR -20 399 1 3 1559 1928 209 60 8 chr5 127704608 127705018 -24832241 + RMER19C LTR ERVK 220 611 0 3 1559 947 138 14 7 chr5 127705029 127705175 -24832084 - B1_Mur1 SINE Alu -2 147 1 3 1559 378 0 0 0 chr5 127705624 127705666 -24831593 + (TAA)n Simple_repeat Simple_repeat 1 42 0 3 1559 413 250 33 8 chr5 127706323 127706444 -24830815 - RMER15 LTR ERVL -154 421 298 3 1559 308 298 31 102 chr5 127706938 127707065 -24830194 - HAL1-3A_ME LINE L1 -766 2092 1975 3 1559 224 186 17 42 chr5 127707071 127707189 -24830070 + (TG)n Simple_repeat Simple_repeat 2 116 0 3 1559 467 185 41 12 chr5 127707163 127707333 -24829926 + (TATG)n Simple_repeat Simple_repeat 4 178 0 3 1559 319 183 12 35 chr5 127707333 127707418 -24829841 + (TATATG)n Simple_repeat Simple_repeat 3 85 0 3 1559 644 196 0 23 chr5 127707418 127707684 -24829575 + (TG)n Simple_repeat Simple_repeat 1 259 0 3 1559 407 210 11 28 chr5 127707711 127707892 -24829367 + (TG)n Simple_repeat Simple_repeat 1 178 0 3 1559 333 309 119 31 chr5 127707917 127708111 -24829148 - RMER15 LTR ERVL -106 469 259 3 1559 330 262 49 24 chr5 127709443 127709493 -24827766 + ORR1B1-int LTR MaLR 594 655 -854 3 1559 2239 92 19 19 chr5 127709503 127709826 -24827433 + ORR1A2 LTR MaLR 5 327 0 3 1559 519 129 20 88 chr5 127709826 127709917 -24827342 + MT2B LTR ERVL 173 256 -345 3 1559 828 123 9 0 chr5 127709827 127709941 -24827318 + B1_Mus1 SINE Alu 14 128 -20 3 1559 330 262 49 24 chr5 127709917 127709929 -24827330 + ORR1B1-int LTR MaLR 656 760 -749 3 1559 569 100 11 0 chr5 127709942 127710032 -24827227 + (GA)n Simple_repeat Simple_repeat 1 91 0 3 1559 951 206 30 52 chr5 127710161 127710392 -24826867 - B4 SINE B4 -65 227 2 3 1559 182 37 37 0 chr5 127710502 127710529 -24826730 + (GCTG)n Simple_repeat Simple_repeat 4 31 0 3 1559 195 114 0 0 chr5 127712539 127712574 -24824685 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 3 1559 304 224 122 36 chr5 127712597 127712731 -24824528 + MIRm SINE MIR 50 191 -85 3 1559 545 292 15 0 chr5 127712872 127713009 -24824250 + RSINE1 SINE B4 21 159 -6 3 1559 388 332 125 62 chr5 127713216 127713537 -24823722 - L1M5 LINE L1 -2952 3194 2854 3 1559 1199 124 17 0 chr5 127713653 127713830 -24823429 + B2_Mm2 SINE B2 14 193 -2 4 1559 325 227 39 39 chr5 127714015 127714194 -24823065 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 4 1559 241 314 51 17 chr5 127714209 127714384 -24822875 - L1M5 LINE L1 -3569 2577 2397 3 1559 1058 217 10 16 chr5 127714408 127714600 -24822659 - B3 SINE B2 -25 191 1 4 1559 322 244 51 102 chr5 127714608 127714745 -24822514 - L1MEb LINE L1 -3658 3676 3547 4 1559 323 409 41 10 chr5 127714778 127714973 -24822286 - L1MEb LINE L1 -5593 1403 1203 4 1559 256 177 0 46 chr5 127715057 127715122 -24822137 - L1MEb LINE L1 -5885 1111 1050 4 1559 360 111 0 0 chr5 127716470 127716524 -24820735 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 4 1559 228 405 45 13 chr5 127716958 127717113 -24820146 - MLT1I LTR MaLR -13 398 239 4 1559 280 289 141 0 chr5 127717502 127717623 -24819636 + MIR SINE MIR 1 138 -124 4 1559 233 217 0 0 chr5 127717668 127717714 -24819545 + (ATGGTG)n Simple_repeat Simple_repeat 4 49 0 4 1559 359 41 20 0 chr5 127718514 127718563 -24818696 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 4 1559 405 286 95 29 chr5 127718732 127718869 -24818390 - RSINE1 SINE B4 -13 152 7 4 1559 1996 188 8 22 chr5 127719368 127719733 -24817526 - MTEa LTR MaLR -17 362 3 4 1559 21 36 0 0 chr5 127722319 127722347 -24814912 + GC_rich Low_complexity Low_complexity 1 28 0 4 1559 419 297 80 66 chr5 127723979 127724267 -24812992 - B4 SINE B4 0 292 1 4 1559 860 230 13 49 chr5 127725382 127725606 -24811653 - B3 SINE B2 0 216 1 4 1559 422 302 163 7 chr5 127725621 127726117 -24811142 - L1ME1 LINE L1 -2 6350 5769 4 1559 202 139 23 0 chr5 127726208 127726251 -24811008 + (TTGG)n Simple_repeat Simple_repeat 1 44 0 4 1559 954 143 0 0 chr5 127726251 127726391 -24810868 - B1_Mur4 SINE Alu -2 148 9 4 1559 435 283 19 56 chr5 127726427 127726588 -24810671 - RSINE1 SINE B4 -9 156 2 4 1559 268 261 7 54 chr5 127726649 127726859 -24810400 - L1ME1 LINE L1 -916 5590 5386 4 1559 740 250 12 6 chr5 127726989 127727150 -24810109 - B3 SINE B2 -54 162 1 4 1559 642 315 47 17 chr5 127727193 127727555 -24809704 - L1ME1 LINE L1 -4000 2400 2028 4 1559 281 191 145 14 chr5 127728415 127728484 -24808775 + ID4 SINE ID 2 79 -4 4 1559 280 261 95 88 chr5 127728484 127728562 -24808697 + ID_B1 SINE B4 2 149 -75 4 1559 916 156 202 11 chr5 127728578 127728766 -24808493 + URR1A DNA MER1_type 2 225 -1 4 1559 269 316 113 88 chr5 127729050 127729289 -24807970 - MLT1C LTR MaLR -10 457 213 4 1559 777 251 80 13 chr5 127729365 127729591 -24807668 - B4 SINE B4 -51 241 1 4 1559 1398 167 4 28 chr5 127730060 127730312 -24806947 - Lx5 LINE L1 -7 7043 6798 4 1559 550 118 0 0 chr5 127730314 127730390 -24806869 + Lx5 LINE L1 6381 6456 -594 4 1559 228 35 0 0 chr5 127730822 127730851 -24806408 + (CA)n Simple_repeat Simple_repeat 1 29 0 4 1559 279 330 186 24 chr5 127731104 127731442 -24805817 - MLT1K LTR MaLR -113 482 90 4 1559 915 172 139 0 chr5 127731466 127731646 -24805613 + B3 SINE B2 4 208 -8 4 1559 880 302 21 14 chr5 127731869 127732158 -24805101 + B4 SINE B4 1 291 -1 4 1559 213 121 0 0 chr5 127732180 127732213 -24805046 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1559 480 326 46 46 chr5 127732908 127733146 -24804113 + MLT2D LTR ERVL 14 251 -163 4 1559 357 241 261 59 chr5 127733576 127733739 -24803520 - L1MC4 LINE L1 -213 7829 7617 4 1559 920 206 48 19 chr5 127733739 127733947 -24803312 - B3 SINE B2 0 216 3 4 1559 357 241 261 59 chr5 127733947 127734021 -24803238 - L1MC4 LINE L1 -426 7616 7544 4 1559 1550 212 35 19 chr5 127734033 127734403 -24802856 + MTEa LTR MaLR 1 376 -3 4 1559 195 42 0 0 chr5 127734636 127734660 -24802599 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1559 507 289 79 37 chr5 127734692 127734933 -24802326 - L1MC4 LINE L1 -1017 7025 6775 4 1559 1155 273 94 14 chr5 127735150 127735521 -24801738 + MTD LTR MaLR 5 405 -14 4 1559 348 304 103 51 chr5 127736013 127736107 -24801152 - L1MC4 LINE L1 -8 8034 7936 4 1559 198 0 0 0 chr5 127736107 127736129 -24801130 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1559 348 304 103 51 chr5 127736129 127736190 -24801069 - L1MC4 LINE L1 -107 7935 7872 4 1559 619 208 62 0 chr5 127736717 127736847 -24800412 - B1_Mur1 SINE Alu -11 138 1 4 1559 216 111 0 0 chr5 127737133 127737169 -24800090 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1559 979 233 87 42 chr5 127737884 127738249 -24799010 - MTD LTR MaLR -14 405 7 4 1559 2600 155 93 86 chr5 127738370 127738929 -24798330 - RMER19B LTR ERVK -336 566 4 4 1559 1051 50 0 80 chr5 127739056 127739207 -24798052 - B1_Mm SINE Alu -8 139 1 4 1559 276 328 119 85 chr5 127739661 127740131 -24797128 + LTR33A LTR ERVL 14 499 -21 4 1559 1026 211 5 23 chr5 127740663 127740877 -24796382 + B3 SINE B2 1 210 -6 4 1559 793 259 62 10 chr5 127741005 127741200 -24796059 - B3 SINE B2 -8 208 4 4 1559 1012 156 16 37 chr5 127742619 127742806 -24794453 + B2_Mm2 SINE B2 3 185 -10 4 1559 397 293 60 79 chr5 127743070 127743285 -24793974 - ID_B1 SINE B4 -12 212 2 4 1559 243 162 13 39 chr5 127744103 127744180 -24793079 + CT-rich Low_complexity Low_complexity 5 79 0 4 1559 180 97 0 0 chr5 127744180 127744211 -24793048 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1559 213 108 0 0 chr5 127744286 127744323 -24792936 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 4 1559 1049 124 141 25 chr5 127744804 127745003 -24792256 - URR1A DNA MER1_type -4 222 1 4 1559 384 22 0 0 chr5 127746417 127746462 -24790797 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1559 405 0 0 0 chr5 127746928 127746973 -24790286 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1559 599 254 7 56 chr5 127746979 127747121 -24790138 - RSINE1 SINE B4 -25 140 6 4 1559 1177 247 43 7 chr5 127747301 127747578 -24789681 + B4 SINE B4 2 288 -4 4 1559 884 310 63 52 chr5 127748817 127749184 -24788075 - MTE2a LTR MaLR -2 377 7 4 1559 21 0 0 0 chr5 127749422 127749443 -24787816 + AT_rich Low_complexity Low_complexity 1 21 0 4 1559 647 222 59 0 chr5 127749824 127749959 -24787300 - ID_B1 SINE B4 -5 219 77 4 1559 180 0 0 0 chr5 127750990 127751010 -24786249 + (T)n Simple_repeat Simple_repeat 1 20 0 4 1559 536 287 28 14 chr5 127751015 127751160 -24786099 + MTE2a LTR MaLR 15 161 -218 4 1559 41461 14 2 6 chr5 127751927 127758494 -24778765 - L1Md_A LINE L1 0 6582 44 4 1559 667 260 70 32 chr5 127758494 127758681 -24778578 - ID_B1 SINE B4 -27 197 4 4 1559 269 135 18 71 chr5 127759054 127759110 -24778149 - MTE2b LTR MaLR 0 379 327 4 1559 635 222 0 16 chr5 127759109 127759237 -24778022 - RSINE1 SINE B4 -36 129 4 4 1559 330 314 39 0 chr5 127759240 127759342 -24777917 - PB1D10 SINE Alu 0 117 12 4 1559 583 309 38 14 chr5 127759398 127759608 -24777651 - B4A SINE B4 -2 290 76 4 1559 272 280 135 8 chr5 127760404 127760530 -24776729 - MLT1K LTR MaLR 0 595 454 4 1559 748 244 155 59 chr5 127760551 127760938 -24776321 + MLT1C LTR MaLR 3 426 -41 4 1559 753 171 0 0 chr5 127761016 127761145 -24776114 - B1_Mus1 SINE Alu -19 129 1 4 1559 686 328 104 29 chr5 127761150 127761708 -24775551 - Lx8 LINE L1 -5 7468 6869 4 1559 2996 63 44 3 chr5 127762375 127762759 -24774500 + MTB LTR MaLR 1 400 0 4 1559 216 0 0 0 chr5 127762904 127762928 -24774331 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4 1559 451 253 16 21 chr5 127763497 127763623 -24773636 + PB1D10 SINE Alu 17 140 -9 4 1559 919 226 99 5 chr5 127763800 127763991 -24773268 + B3 SINE B2 6 214 -2 4 1559 185 254 55 0 chr5 127764342 127764397 -24772862 - L2b LINE L2 -225 3150 3093 4 1559 496 147 19 10 chr5 127764549 127764652 -24772607 + GA-rich Low_complexity Low_complexity 3 106 0 4 1559 444 248 45 37 chr5 127764684 127764818 -24772441 + B1F SINE Alu 1 135 -14 4 1559 1144 88 0 0 chr5 127765263 127765411 -24771848 + B1_Mus1 SINE Alu 1 148 0 4 1559 27 62 0 0 chr5 127765873 127765921 -24771338 + AT_rich Low_complexity Low_complexity 1 48 0 4 1559 195 80 39 39 chr5 127766026 127766078 -24771181 + T-rich Low_complexity Low_complexity 3 54 0 4 1559 339 25 0 0 chr5 127766494 127766534 -24770725 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1559 363 44 0 0 chr5 127766534 127766578 -24770681 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 4 1559 233 248 0 28 chr5 127766582 127766690 -24770569 + (CA)n Simple_repeat Simple_repeat 2 106 0 4 1559 367 211 0 66 chr5 127766738 127766921 -24770338 + (CATA)n Simple_repeat Simple_repeat 4 174 0 4 1559 225 0 0 0 chr5 127767630 127767655 -24769604 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 4 1559 222 62 0 0 chr5 127767671 127767703 -24769556 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 1559 393 333 106 58 chr5 127767901 127768127 -24769132 + B4A SINE B4 12 248 -44 4 1559 864 162 0 69 chr5 127769071 127769230 -24768029 - B1_Mur2 SINE Alu -1 148 1 4 1559 660 268 75 43 chr5 127769243 127769255 -24768004 - B3A SINE B2 -5 193 185 4 1559 1053 187 44 0 chr5 127769255 127769300 -24767959 - B3 SINE B2 0 216 168 4 1559 396 0 0 0 chr5 127769300 127769344 -24767915 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1559 1053 187 44 0 chr5 127769344 127769501 -24767758 - B3 SINE B2 -49 167 6 4 1559 660 268 75 43 chr5 127769501 127769675 -24767584 - B3A SINE B2 -14 184 1 4 1559 328 208 117 0 chr5 127770216 127770293 -24766966 + MLT1G1 LTR MaLR 471 556 -23 4 1559 537 271 125 16 chr5 127771980 127772164 -24765095 - B4A SINE B4 -39 253 50 4 1559 1802 171 16 3 chr5 127772211 127772528 -24764731 + Lx5 LINE L1 6727 7047 -3 4 1559 323 195 23 0 chr5 127772590 127772677 -24764582 + (TATATG)n Simple_repeat Simple_repeat 5 93 0 4 1559 312 325 118 13 chr5 127772682 127772835 -24764424 - L1MD3 LINE L1 -1323 6672 6504 4 1559 1574 126 99 11 chr5 127772994 127773266 -24763993 - Lx LINE L1 -7 6647 6352 4 1559 4246 174 89 64 chr5 127773267 127774136 -24763123 + RMER19B LTR ERVK 13 902 0 4 1559 600 284 55 20 chr5 127774159 127774360 -24762899 - ID_B1 SINE B4 -15 209 2 5 1559 1140 257 22 114 chr5 127774889 127775293 -24761966 + MTE2a LTR MaLR 11 377 -2 5 1559 852 133 26 53 chr5 127776842 127776993 -24760266 + B1_Mm SINE Alu 1 147 0 5 1559 465 19 0 0 chr5 127777004 127777058 -24760201 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1559 597 262 191 18 chr5 127777064 127777336 -24759923 - Lx7 LINE L1 -395 7301 6983 5 1559 807 152 208 42 chr5 127778209 127778401 -24758858 - URR1A DNA MER1_type -2 224 1 5 1559 490 250 8 8 chr5 127778934 127779182 -24758077 + (CA)n Simple_repeat Simple_repeat 1 248 0 5 1559 309 89 0 0 chr5 127780334 127780379 -24756880 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1559 621 250 82 13 chr5 127780386 127780544 -24756715 - B3 SINE B2 -47 169 1 5 1559 210 71 0 0 chr5 127780612 127780640 -24756619 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 5 1559 331 130 25 49 chr5 127780644 127780725 -24756534 + (CATATA)n Simple_repeat Simple_repeat 3 81 0 5 1559 315 356 6 17 chr5 127781949 127782126 -24755133 + (TG)n Simple_repeat Simple_repeat 2 176 0 5 1559 916 223 20 36 chr5 127782149 127782344 -24754915 - B3 SINE B2 -24 192 1 5 1559 483 33 0 0 chr5 127782772 127782833 -24754426 + (TG)n Simple_repeat Simple_repeat 1 61 0 5 1559 311 322 0 117 chr5 127782926 127783063 -24754196 - B4A SINE B4 -171 121 1 5 1559 189 0 0 0 chr5 127783090 127783111 -24754148 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1559 314 196 37 0 chr5 127783118 127783225 -24754034 + (TA)n Simple_repeat Simple_repeat 1 111 0 5 1559 550 189 0 0 chr5 127783375 127783470 -24753789 + Lx8 LINE L1 7227 7321 -152 5 1559 611 204 0 0 chr5 127783524 127783627 -24753632 - RSINE1 SINE B4 -59 106 4 5 1559 1272 248 14 102 chr5 127784005 127784418 -24752841 + MTE2a LTR MaLR 1 377 -2 5 1559 753 287 52 22 chr5 127784506 127784777 -24752482 + B4A SINE B4 1 279 -13 5 1559 237 242 0 0 chr5 127784828 127784890 -24752369 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1559 315 0 0 0 chr5 127784907 127784942 -24752317 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1559 862 243 17 89 chr5 127785017 127785252 -24752007 - B4 SINE B4 -73 219 2 5 1559 441 0 0 0 chr5 127785301 127785350 -24751909 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1559 747 0 0 0 chr5 127786055 127786138 -24751121 + (TTTC)n Simple_repeat Simple_repeat 4 86 0 5 1559 678 25 0 0 chr5 127786635 127786715 -24750544 + (TTC)n Simple_repeat Simple_repeat 1 80 0 5 1559 396 138 0 0 chr5 127786715 127786780 -24750479 + (TCCC)n Simple_repeat Simple_repeat 2 66 0 5 1559 254 115 19 0 chr5 127787021 127787073 -24750186 + (GGGGA)n Simple_repeat Simple_repeat 1 53 0 5 1559 210 37 0 0 chr5 127787469 127787496 -24749763 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 5 1559 26 50 0 0 chr5 127788243 127788283 -24748976 + AT_rich Low_complexity Low_complexity 1 40 0 5 1559 365 355 13 60 chr5 127788335 127788485 -24748774 + B4A SINE B4 2 144 -148 5 1559 331 268 31 63 chr5 127788499 127788612 -24748647 + RSINE1 SINE B4 78 292 0 5 1559 1140 291 62 43 chr5 127788918 127789584 -24747675 + L1MC2 LINE L1 5403 6119 -225 5 1559 802 229 18 6 chr5 127789791 127789962 -24747297 + B3A SINE B2 1 173 -25 5 1559 336 102 0 0 chr5 127789970 127790019 -24747240 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1559 303 259 138 69 chr5 127790032 127790075 -24747184 - B2_Mm1a SINE B2 -6 187 2 5 1559 795 206 8 0 chr5 127790075 127790206 -24747053 - RSINE1 SINE B4 -31 134 3 5 1559 244 343 0 0 chr5 127790340 127790410 -24746849 + L2b LINE L2 3290 3359 -16 5 1559 952 105 7 7 chr5 127790429 127790582 -24746677 + (GGAAA)n Simple_repeat Simple_repeat 2 154 0 5 1559 1288 233 76 45 chr5 127792026 127792420 -24744839 - MTD LTR MaLR -14 405 1 5 1559 189 0 0 0 chr5 127792934 127792955 -24744304 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1559 266 252 117 138 chr5 127792986 127793225 -24744034 - ORR1C2 LTR MaLR -73 311 63 5 1559 288 347 97 7 chr5 127793352 127793497 -24743762 + MLT1J LTR MaLR 161 318 -194 5 1559 195 42 0 0 chr5 127793506 127793530 -24743729 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 5 1559 269 287 53 53 chr5 127793530 127793644 -24743615 + MLT1J LTR MaLR 360 473 -39 5 1559 285 217 21 11 chr5 127793779 127793872 -24743387 + T-rich Low_complexity Low_complexity 2 95 0 5 1559 222 115 58 0 chr5 127794646 127794698 -24742561 + (CATA)n Simple_repeat Simple_repeat 1 55 0 5 1559 190 246 43 14 chr5 127794875 127794945 -24742314 - L3 LINE CR1 -1994 2495 2424 5 1560 1350 246 14 118 chr5 127795242 127795657 -24741602 - MTE2a LTR MaLR -5 374 3 5 1560 331 328 43 21 chr5 127795660 127795800 -24741459 - L1M4 LINE L1 -389 5789 5647 5 1560 1575 314 64 4 chr5 127795823 127796514 -24740745 - L1M4 LINE L1 -1287 4859 4128 5 1560 473 186 0 17 chr5 127796593 127796713 -24740546 + (TTCA)n Simple_repeat Simple_repeat 2 119 0 5 1560 513 44 0 0 chr5 127797296 127797364 -24739895 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1560 569 298 5 63 chr5 127797597 127797669 -24739590 - B4 SINE B4 -7 285 218 5 1560 189 0 0 0 chr5 127797669 127797690 -24739569 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 5 1560 569 298 5 63 chr5 127797690 127797807 -24739452 - B4 SINE B4 -75 217 107 5 1560 1621 262 119 18 chr5 127797820 127798376 -24738883 - Lx8 LINE L1 -2 7471 6860 5 1560 419 270 0 10 chr5 127798424 127798525 -24738734 - B4 SINE B4 -192 100 1 5 1560 251 256 40 91 chr5 127799087 127799186 -24738073 - B1F SINE Alu -2 147 54 5 1560 266 293 12 12 chr5 127799734 127799817 -24737442 + MER121 Unknown Unknown 49 131 -281 5 1560 251 54 27 0 chr5 127799817 127799854 -24737405 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 5 1560 503 313 24 5 chr5 127800247 127800459 -24736800 - L1MA5 LINE L1 0 6300 6085 5 1560 225 191 21 0 chr5 127800754 127800801 -24736458 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1560 868 278 48 75 chr5 127800810 127801078 -24736181 - B4 SINE B4 -1 291 31 5 1560 192 205 26 0 chr5 127801381 127801420 -24735839 - L3 LINE CR1 -3044 1445 1406 5 1560 477 0 0 0 chr5 127801601 127801654 -24735605 + (TAA)n Simple_repeat Simple_repeat 2 54 0 5 1560 390 152 0 0 chr5 127802394 127802486 -24734773 + CT-rich Low_complexity Low_complexity 1 92 0 5 1560 291 227 0 0 chr5 127802491 127802588 -24734671 + (CA)n Simple_repeat Simple_repeat 1 97 0 5 1560 243 0 0 0 chr5 127802667 127802694 -24734565 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1560 306 0 0 0 chr5 127802904 127802938 -24734321 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1560 1144 249 40 34 chr5 127802938 127803266 -24733993 - MTE2b LTR MaLR -3 376 47 5 1560 695 274 36 85 chr5 127803379 127803407 -24733852 - B4A SINE B4 0 292 270 5 1560 432 0 0 0 chr5 127803407 127803455 -24733804 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1560 695 274 36 85 chr5 127803455 127803504 -24733755 - B4A SINE B4 -23 269 222 5 1560 198 0 0 0 chr5 127803509 127803531 -24733728 + (GTTTG)n Simple_repeat Simple_repeat 2 23 0 5 1560 1131 83 0 14 chr5 127803531 127803671 -24733588 - B1_Mus1 SINE Alu -8 140 1 5 1560 695 274 36 85 chr5 127803671 127803815 -24733444 - B4A SINE B4 -71 221 81 5 1560 447 19 0 0 chr5 127803829 127803881 -24733378 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1560 453 284 57 19 chr5 127803927 127804085 -24733174 - RSINE1 SINE B4 0 165 2 5 1560 237 182 35 35 chr5 127804087 127804144 -24733115 - B4A SINE B4 -197 95 39 5 1560 911 183 86 30 chr5 127805449 127805646 -24731613 + B3 SINE B2 2 209 -7 5 1560 188 34 0 33 chr5 127805662 127805692 -24731567 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 5 1560 4638 69 22 2 chr5 127805692 127806289 -24730970 - Lx3_Mus LINE L1 -21 6988 6380 5 1560 555 294 51 13 chr5 127806907 127807141 -24730118 + MER33 DNA MER1_type 41 283 -41 5 1560 1335 223 39 75 chr5 127807304 127807663 -24729596 + MTE2a LTR MaLR 2 347 -32 5 1560 1432 221 92 28 chr5 127808778 127809137 -24728122 + Lx8 LINE L1 6958 7339 -134 5 1560 758 196 0 28 chr5 127809169 127809311 -24727948 - B1_Mus2 SINE Alu -9 138 1 5 1560 471 145 0 0 chr5 127809783 127809866 -24727393 + (TATG)n Simple_repeat Simple_repeat 3 85 0 5 1560 1407 234 7 40 chr5 127811258 127811557 -24725702 + B4A SINE B4 2 290 -2 5 1560 369 0 0 0 chr5 127811703 127811744 -24725515 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1560 505 105 0 23 chr5 127811761 127811849 -24725410 + (TTTTC)n Simple_repeat Simple_repeat 4 89 0 5 1560 423 0 0 0 chr5 127811850 127811897 -24725362 + (TTG)n Simple_repeat Simple_repeat 2 48 0 5 1560 1111 44 0 29 chr5 127811897 127812037 -24725222 - B1_Mus1 SINE Alu -8 140 5 5 1560 255 278 27 14 chr5 127812039 127812112 -24725147 - MLT1C LTR MaLR -371 96 23 5 1560 491 244 118 0 chr5 127812887 127813022 -24724237 - RSINE1 SINE B4 -12 153 3 5 1560 3659 57 35 2 chr5 127813150 127813610 -24723649 - MT2C_Mm LTR ERVL 0 475 1 5 1560 197 33 0 32 chr5 127814043 127814063 -24723196 + (TG)n Simple_repeat Simple_repeat 2 21 0 5 1560 213 39 0 0 chr5 127814063 127814089 -24723170 + (TAGG)n Simple_repeat Simple_repeat 4 29 0 5 1560 197 33 0 32 chr5 127814089 127814099 -24723160 + (TG)n Simple_repeat Simple_repeat 2 11 0 5 1560 23 33 0 0 chr5 127814286 127814316 -24722943 + AT_rich Low_complexity Low_complexity 1 30 0 5 1560 206 378 51 0 chr5 127814489 127814587 -24722672 + L2a LINE L2 3293 3395 -31 5 1560 698 307 60 54 chr5 127814949 127815280 -24721979 - ORR1E LTR MaLR -4 355 23 5 1560 263 242 128 32 chr5 127815375 127815469 -24721790 - ID_B1 SINE B4 0 224 122 5 1560 428 338 26 73 chr5 127815456 127815689 -24721570 + MER82 DNA MER2_type 169 390 -263 5 1560 462 238 98 8 chr5 127815696 127815819 -24721440 + B1F1 SINE Alu 7 140 -9 5 1560 299 339 26 58 chr5 127815892 127816083 -24721176 + MER82 DNA MER2_type 382 566 -87 5 1560 21 0 0 0 chr5 127816294 127816315 -24720944 + AT_rich Low_complexity Low_complexity 1 21 0 5 1560 375 41 0 0 chr5 127816337 127816386 -24720873 + (TG)n Simple_repeat Simple_repeat 2 50 0 5 1560 191 114 0 28 chr5 127816650 127816686 -24720573 + (CCCCCG)n Simple_repeat Simple_repeat 3 37 0 6 1560 180 0 0 0 chr5 127816884 127816904 -24720355 + (GA)n Simple_repeat Simple_repeat 2 21 0 6 1560 417 39 0 0 chr5 127817061 127817112 -24720147 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1560 914 262 31 45 chr5 127817450 127817742 -24719517 - B4A SINE B4 0 292 5 6 1560 699 217 0 28 chr5 127817914 127818056 -24719203 + B1_Mur3 SINE Alu 2 139 -10 6 1560 234 0 0 0 chr5 127818056 127818082 -24719177 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1560 980 256 118 17 chr5 127818154 127818457 -24718802 + ORR1E LTR MaLR 1 351 -28 6 1560 796 162 70 37 chr5 127818458 127818646 -24718613 + B3 SINE B2 1 195 0 6 1560 275 272 111 99 chr5 127818606 127818956 -24718303 + RLTR21 LTR ERVK 671 1311 -261 6 1560 407 284 11 43 chr5 127818969 127819153 -24718106 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 6 1560 543 229 80 62 chr5 127820018 127820186 -24717073 - MTD LTR MaLR -14 405 238 6 1560 457 234 0 11 chr5 127820923 127821018 -24716241 - RMER17C LTR ERVK -315 95 2 6 1560 685 225 106 77 chr5 127821024 127821231 -24716028 + ID_B1 SINE B4 10 222 -2 6 1560 279 273 91 0 chr5 127821242 127821341 -24715918 + L1MA6 LINE L1 6145 6252 -48 6 1560 695 254 0 0 chr5 127821417 127821560 -24715699 + B1_Mur4 SINE Alu 3 146 -4 6 1560 277 264 28 9 chr5 127822432 127822649 -24714610 + (TCCA)n Simple_repeat Simple_repeat 1 221 0 6 1560 214 297 23 30 chr5 127822587 127822692 -24714567 + (CATA)n Simple_repeat Simple_repeat 2 107 0 6 1560 213 39 0 0 chr5 127822692 127822718 -24714541 + (TCCA)n Simple_repeat Simple_repeat 1 26 0 6 1560 214 297 23 30 chr5 127822718 127822744 -24714515 + (CATA)n Simple_repeat Simple_repeat 4 28 0 6 1560 192 152 0 0 chr5 127822787 127822820 -24714439 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 6 1560 221 169 17 0 chr5 127822892 127822951 -24714308 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 6 1560 260 254 17 0 chr5 127823695 127823754 -24713505 - MLT1F1 LTR MaLR -319 250 191 6 1560 255 103 0 0 chr5 127823771 127823810 -24713449 + (TGG)n Simple_repeat Simple_repeat 1 39 0 6 1560 225 0 0 0 chr5 127823899 127823924 -24713335 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1560 468 0 0 0 chr5 127823924 127823975 -24713284 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1560 539 330 17 44 chr5 127823980 127824278 -24712981 - B4A SINE B4 0 292 3 6 1560 399 100 0 0 chr5 127824331 127824401 -24712858 + (TC)n Simple_repeat Simple_repeat 1 70 0 6 1560 758 125 30 38 chr5 127824401 127824534 -24712725 - B1_Mur4 SINE Alu -18 132 1 6 1560 884 199 17 17 chr5 127825229 127825408 -24711851 - B3A SINE B2 -16 182 4 6 1560 194 333 63 56 chr5 127825549 127825692 -24711567 - MIR SINE MIR -2 260 117 6 1560 823 233 133 12 chr5 127826646 127826894 -24710365 + B4 SINE B4 14 291 -1 6 1560 417 141 16 73 chr5 127826896 127827087 -24710172 + (CACAC)n Simple_repeat Simple_repeat 1 180 0 6 1560 805 42 46 35 chr5 127827119 127827293 -24709966 + (CA)n Simple_repeat Simple_repeat 1 176 0 6 1560 364 329 148 70 chr5 127828297 127828568 -24708691 + B4A SINE B4 1 292 0 6 1560 608 341 139 39 chr5 127829140 127829579 -24707680 + MLT1D LTR MaLR 21 503 -2 6 1560 378 0 0 0 chr5 127830417 127830459 -24706800 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1560 654 268 82 5 chr5 127830533 127830739 -24706520 + ID_B1 SINE B4 1 222 -2 6 1560 231 292 22 11 chr5 127830742 127830832 -24706427 + GA-rich Low_complexity Low_complexity 3 93 0 6 1560 238 327 125 0 chr5 127831193 127831296 -24705963 - MER20 DNA MER1_type -49 170 55 6 1560 878 293 28 42 chr5 127831296 127831584 -24705675 + B4A SINE B4 1 284 -8 6 1560 215 243 14 0 chr5 127831670 127831740 -24705519 + (TA)n Simple_repeat Simple_repeat 1 71 0 6 1560 711 0 0 0 chr5 127833395 127833474 -24703785 + (GA)n Simple_repeat Simple_repeat 2 80 0 6 1560 918 215 33 28 chr5 127833483 127833694 -24703565 - B3 SINE B2 -4 212 1 6 1560 395 232 12 34 chr5 127833928 127834032 -24703227 + B4 SINE B4 10 111 -181 6 1560 396 0 0 0 chr5 127834131 127834175 -24703084 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 6 1560 1101 103 26 0 chr5 127834176 127834332 -24702927 - B2_Mm2 SINE B2 -34 161 2 6 1560 478 273 0 8 chr5 127834971 127835093 -24702166 - RSINE1 SINE B4 -40 125 5 6 1560 802 288 89 50 chr5 127835485 127835766 -24701493 + B4 SINE B4 1 292 0 6 1560 810 121 0 0 chr5 127835782 127835939 -24701320 + (GA)n Simple_repeat Simple_repeat 1 157 0 6 1560 1229 116 26 11 chr5 127837153 127837181 -24700078 - B2_Mm2 SINE B2 0 195 163 6 1560 195 42 0 0 chr5 127837181 127837205 -24700054 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6 1560 1229 116 26 11 chr5 127837205 127837367 -24699892 - B2_Mm2 SINE B2 -33 162 2 6 1560 604 253 204 0 chr5 127837465 127837651 -24699608 - B4A SINE B4 -15 277 54 6 1560 465 19 0 0 chr5 127838050 127838104 -24699155 + (GGGTG)n Simple_repeat Simple_repeat 3 56 0 6 1560 369 245 112 9 chr5 127838391 127838498 -24698761 - B3 SINE B2 -8 208 91 6 1560 698 258 72 118 chr5 127838427 127838499 -24698760 - B4 SINE B4 -2 290 218 6 1560 247 0 25 50 chr5 127838499 127838539 -24698720 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1560 1033 68 0 0 chr5 127838539 127838666 -24698593 - B1_Mm SINE Alu -4 143 17 6 1560 698 258 72 118 chr5 127838666 127838770 -24698489 - B4 SINE B4 -75 217 1 6 1560 693 239 230 0 chr5 127839041 127839267 -24697992 - B4A SINE B4 -13 279 2 6 1560 207 0 0 0 chr5 127839319 127839342 -24697917 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6 1560 586 278 33 89 chr5 127839493 127839706 -24697553 - B4 SINE B4 -87 205 5 6 1560 335 41 0 20 chr5 127841165 127841215 -24696044 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6 1560 195 42 0 0 chr5 127842038 127842062 -24695197 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 6 1560 250 298 104 30 chr5 127843025 127843195 -24694064 + MIR SINE MIR 68 250 -18 6 1560 351 150 0 0 chr5 127843568 127843628 -24693631 + (CATA)n Simple_repeat Simple_repeat 4 63 0 6 1560 613 299 153 11 chr5 127843775 127843964 -24693295 + B3 SINE B2 1 216 0 6 1560 437 324 28 23 chr5 127844066 127844243 -24693016 + B4A SINE B4 107 284 -8 6 1560 321 26 0 0 chr5 127844247 127844285 -24692974 + (CA)n Simple_repeat Simple_repeat 1 38 0 6 1560 767 203 28 0 chr5 127844525 127844668 -24692591 + B1_Mur1 SINE Alu 3 149 0 6 1560 342 216 0 26 chr5 127845514 127845590 -24691669 - B4A SINE B4 -14 278 205 6 1560 620 230 184 18 chr5 127845717 127845755 -24691504 - B3 SINE B2 0 216 166 6 1560 606 39 0 0 chr5 127845755 127845832 -24691427 + (TG)n Simple_repeat Simple_repeat 2 78 0 6 1560 620 191 167 148 chr5 127845832 127845975 -24691284 - B3 SINE B2 -51 165 7 6 1560 3530 301 62 14 chr5 127845977 127847212 -24690047 - Lx8 LINE L1 -276 7368 6200 6 1560 22 35 0 0 chr5 127847212 127847241 -24690018 + AT_rich Low_complexity Low_complexity 1 29 0 6 1560 309 312 68 49 chr5 127847241 127847403 -24689856 + L1ME3A LINE L1 5764 5928 -245 6 1560 318 167 30 60 chr5 127847403 127847537 -24689722 + (TATAA)n Simple_repeat Simple_repeat 1 130 0 6 1560 417 231 46 46 chr5 127848256 127848365 -24688894 + B2_Mm2 SINE B2 4 112 -83 6 1560 300 252 55 27 chr5 127848392 127848502 -24688757 + L1MB7 LINE L1 5848 5960 -224 6 1560 253 342 88 0 chr5 127848710 127848824 -24688435 - MER102a DNA MER1_type -94 236 113 6 1560 1303 221 61 52 chr5 127848822 127849174 -24688085 - MTE2a LTR MaLR -14 405 39 6 1560 701 219 75 90 chr5 127849174 127849375 -24687884 + B3A SINE B2 1 198 0 6 1560 956 268 72 111 chr5 127849375 127849445 -24687814 - MTE2a LTR MaLR -365 54 7 6 1560 833 261 27 67 chr5 127849554 127849854 -24687405 + B4A SINE B4 1 288 -4 6 1560 292 333 0 10 chr5 127849900 127850003 -24687256 - MLT1K LTR MaLR -18 449 348 6 1560 213 121 0 0 chr5 127850539 127850572 -24686687 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1560 311 252 16 40 chr5 127851355 127851380 -24685879 + (TATG)n Simple_repeat Simple_repeat 2 26 0 6 1560 426 121 0 0 chr5 127851380 127851446 -24685813 + (CATA)n Simple_repeat Simple_repeat 2 67 0 6 1560 311 241 12 38 chr5 127851446 127851662 -24685597 + (TATG)n Simple_repeat Simple_repeat 1 210 0 6 1560 252 59 0 0 chr5 127851746 127851780 -24685479 + (TATG)n Simple_repeat Simple_repeat 4 37 0 6 1560 289 271 28 28 chr5 127851817 127851889 -24685370 - B4 SINE B4 -4 288 217 6 1560 807 278 28 19 chr5 127851934 127852150 -24685109 - B4 SINE B4 -69 223 6 6 1560 380 272 102 17 chr5 127852166 127852292 -24684967 - B1F1 SINE Alu -182 132 4 6 1560 304 378 99 49 chr5 127853422 127853706 -24683553 - MLT1K LTR MaLR -294 301 4 6 1560 302 325 134 10 chr5 127853723 127853942 -24683317 + MIR SINE MIR 23 262 0 6 1560 252 0 0 0 chr5 127854263 127854291 -24682968 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 6 1560 315 238 154 91 chr5 127855104 127855312 -24681947 + MER57F LTR ERV1 208 428 -8 6 1560 1103 170 40 5 chr5 127855332 127855533 -24681726 - B3 SINE B2 -6 210 3 6 1560 194 0 39 0 chr5 127856716 127856742 -24680517 + (TTCTG)n Simple_repeat Simple_repeat 4 30 0 6 1560 1434 240 84 6 chr5 127856749 127857105 -24680154 - MTD LTR MaLR -14 405 22 6 1560 633 96 0 0 chr5 127857537 127857631 -24679628 + (GGGA)n Simple_repeat Simple_repeat 4 97 0 6 1560 405 231 186 8 chr5 127857640 127857758 -24679501 - B1F SINE Alu -10 139 1 6 1560 330 67 0 0 chr5 127857923 127857968 -24679291 + (CGTG)n Simple_repeat Simple_repeat 2 46 0 6 1560 797 0 11 0 chr5 127857996 127858089 -24679170 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 6 1560 246 245 19 0 chr5 127858341 127858394 -24678865 + ID4 SINE ID 1 54 -29 6 1560 1976 161 109 21 chr5 127860492 127860517 -24676742 + MTC LTR MaLR 5 40 -381 7 1560 292 39 77 0 chr5 127860517 127860569 -24676690 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 7 1560 1976 161 109 21 chr5 127860569 127860918 -24676341 + MTC LTR MaLR 41 412 -9 7 1560 1817 196 147 41 chr5 127860948 127861432 -24675827 + Lx8 LINE L1 6920 7454 -19 7 1560 360 0 0 0 chr5 127861473 127861513 -24675746 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 7 1560 281 311 67 19 chr5 127861671 127861776 -24675483 - MER63B DNA AcHobo -14 422 313 7 1560 313 320 77 23 chr5 127862252 127862407 -24674852 - MLT1H LTR MaLR -6 549 382 7 1560 267 280 27 0 chr5 127862550 127862625 -24674634 - MLT1H LTR MaLR -410 139 63 7 1560 891 284 21 12 chr5 127863460 127863702 -24673557 + B4 SINE B4 3 246 -46 7 1560 248 254 17 0 chr5 127863851 127863910 -24673349 + CT-rich Low_complexity Low_complexity 2 61 0 7 1560 207 213 16 0 chr5 127864103 127864164 -24673095 + (TA)n Simple_repeat Simple_repeat 2 63 0 7 1560 243 0 0 0 chr5 127864247 127864274 -24672985 + (GTTTG)n Simple_repeat Simple_repeat 2 28 0 7 1560 321 245 39 126 chr5 127864699 127864881 -24672378 - L2a LINE L2 0 3426 3261 7 1560 471 315 12 24 chr5 127864888 127865054 -24672205 + RSINE1 SINE B4 2 165 0 7 1560 1288 174 168 54 chr5 127865081 127865415 -24671844 + ORR1D1 LTR MaLR 3 374 0 7 1560 1378 108 81 0 chr5 127865513 127865736 -24671523 - ORR1A4 LTR MaLR 0 329 89 7 1560 3904 60 2 0 chr5 127865736 127866221 -24671038 + L1Md_F2 LINE L1 5101 5586 -297 7 1560 7309 54 71 4 chr5 127866221 127867152 -24670107 + L1Md_F2 LINE L1 5587 6579 -3 7 1560 622 67 31 43 chr5 127867173 127867298 -24669961 - ORR1A4 LTR MaLR -249 145 1 7 1560 449 202 0 0 chr5 127867427 127867506 -24669753 + B3A SINE B2 2 80 -118 7 1560 821 312 42 42 chr5 127867517 127867801 -24669458 + MTEb LTR MaLR 10 293 -86 7 1560 1754 135 49 49 chr5 127867963 127868290 -24668969 + ORR1A4 LTR MaLR 3 329 0 7 1560 459 35 0 0 chr5 127868576 127868633 -24668626 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1560 201 186 0 23 chr5 127868898 127868942 -24668317 + (TATG)n Simple_repeat Simple_repeat 4 46 0 7 1560 645 303 35 25 chr5 127868945 127869145 -24668114 - B4A SINE B4 -2 290 89 7 1560 841 179 0 35 chr5 127869156 127869301 -24667958 - B1_Mur1 SINE Alu 0 149 10 7 1560 739 275 14 48 chr5 127869161 127869392 -24667867 - ID_B1 SINE B4 -3 221 2 7 1560 189 351 0 51 chr5 127869543 127869621 -24667638 - MIRb SINE MIR -1 267 194 7 1560 385 316 83 50 chr5 127869862 127870102 -24667157 - MLT1F LTR MaLR -104 444 197 7 1560 351 0 0 0 chr5 127870252 127870291 -24666968 + (TC)n Simple_repeat Simple_repeat 2 40 0 7 1560 495 0 0 0 chr5 127870291 127870345 -24666914 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1560 708 251 70 20 chr5 127870345 127870460 -24666799 - B4 SINE B4 -82 210 83 7 1560 330 45 0 0 chr5 127870460 127870504 -24666755 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 7 1560 708 251 70 20 chr5 127870504 127870587 -24666672 - B4 SINE B4 -210 82 2 7 1560 712 213 67 33 chr5 127871658 127871838 -24665421 + B3 SINE B2 31 216 0 7 1560 497 298 0 9 chr5 127871859 127871974 -24665285 + B4A SINE B4 91 204 -88 7 1560 773 256 92 22 chr5 127871989 127872217 -24665042 - B4A SINE B4 -42 250 7 7 1560 923 199 88 16 chr5 127873576 127873770 -24663489 - B3 SINE B2 -4 212 5 7 1560 913 149 11 6 chr5 127873779 127873954 -24663305 + CT-rich Low_complexity Low_complexity 3 178 0 7 1560 1129 126 66 0 chr5 127873964 127874147 -24663112 - B2_Mm2 SINE B2 0 195 1 7 1560 251 204 94 114 chr5 127874182 127874331 -24662928 - L1ME3 LINE L1 -45 6117 5972 7 1560 8547 37 3 1 chr5 127874377 127875774 -24661485 - L1Md_F2 LINE L1 -4 6578 5201 7 1560 1500 188 90 24 chr5 127876268 127876601 -24660658 + MTD LTR MaLR 65 419 0 7 1560 387 313 37 7 chr5 127876822 127876957 -24660302 - RMER15 LTR ERVL -15 560 422 7 1560 608 129 160 103 chr5 127877262 127877418 -24659841 - URR1A DNA MER1_type -61 165 1 7 1560 226 289 133 38 chr5 127877735 127877893 -24659366 - MLT1K LTR MaLR -6 589 417 7 1560 672 89 0 0 chr5 127877895 127877996 -24659263 + (TC)n Simple_repeat Simple_repeat 1 101 0 7 1560 441 0 0 0 chr5 127877998 127878047 -24659212 + (TG)n Simple_repeat Simple_repeat 2 50 0 7 1560 594 219 88 0 chr5 127878047 127878161 -24659098 - B1_Mur1 SINE Alu -24 125 2 7 1560 252 342 137 26 chr5 127878056 127878173 -24659086 - B4 SINE B4 -87 205 76 7 1560 225 94 0 0 chr5 127878330 127878362 -24658897 + (CCCCCT)n Simple_repeat Simple_repeat 2 33 0 7 1560 267 103 0 0 chr5 127878874 127878913 -24658346 + (GA)n Simple_repeat Simple_repeat 1 39 0 7 1560 777 80 27 0 chr5 127880840 127880952 -24656307 + B1_Mus2 SINE Alu 33 147 0 7 1560 757 271 218 37 chr5 127880993 127881276 -24655983 - MTD LTR MaLR -34 385 36 7 1560 1416 169 0 0 chr5 127881276 127881501 -24655758 + URR1B DNA MER1_type 1 225 0 7 1560 757 271 218 37 chr5 127881501 127881543 -24655716 - MTD LTR MaLR -384 35 1 7 1560 1339 85 0 31 chr5 127882347 127882541 -24654718 - B2_Mm2 SINE B2 -7 188 1 7 1560 382 297 51 0 chr5 127882565 127882683 -24654576 - B1F1 SINE Alu -8 141 18 7 1560 3548 158 192 74 chr5 127882948 127883755 -24653504 + RMER19B LTR ERVK 1 902 0 7 1560 965 217 12 12 chr5 127883824 127884041 -24653218 + B3A SINE B2 4 216 0 7 1560 1136 263 84 89 chr5 127884886 127885057 -24652202 + MTE2b LTR MaLR 1 194 -185 7 1560 837 290 73 43 chr5 127885057 127885425 -24651834 - MTE2a LTR MaLR 0 379 1 7 1560 1136 263 84 89 chr5 127885425 127885633 -24651626 + MTE2b LTR MaLR 195 378 -1 7 1560 330 26 0 0 chr5 127885935 127885974 -24651285 + (CA)n Simple_repeat Simple_repeat 2 40 0 7 1560 1155 242 77 21 chr5 127886382 127886707 -24650552 + ORR1E LTR MaLR 2 344 -15 7 1560 355 287 0 22 chr5 127887199 127887288 -24649971 - MER20 DNA MER1_type -56 163 77 7 1560 243 274 12 23 chr5 127887286 127887314 -24649945 - B2_Mm1t SINE B2 -4 189 162 7 1560 351 0 0 0 chr5 127887314 127887353 -24649906 + (TG)n Simple_repeat Simple_repeat 2 40 0 7 1560 243 274 12 23 chr5 127887353 127887410 -24649849 - B2_Mm1t SINE B2 -32 161 106 7 1560 693 223 0 35 chr5 127887382 127887526 -24649733 - B3A SINE B2 -54 144 6 7 1560 326 287 29 72 chr5 127887910 127887954 -24649305 + MIR SINE MIR 8 52 -210 7 1560 1242 126 90 19 chr5 127887954 127888165 -24649094 + URR1A DNA MER1_type 1 226 0 7 1560 326 287 29 72 chr5 127888165 127888259 -24649000 + MIR SINE MIR 53 140 -122 7 1560 265 362 43 11 chr5 127888426 127888568 -24648691 + B1F1 SINE Alu 1 148 -1 7 1560 266 250 28 0 chr5 127888583 127888655 -24648604 + ID2 SINE ID 1 74 -9 7 1560 1720 205 33 39 chr5 127889498 127889858 -24647401 - MTE2b LTR MaLR -13 366 9 7 1560 2722 84 5 3 chr5 127889937 127890306 -24646953 - L1_Mus3 LINE L1 -1 6637 6268 7 1560 188 231 0 84 chr5 127890414 127890485 -24646774 + L3 LINE CR1 3498 3562 -927 7 1560 396 0 0 0 chr5 127890493 127890537 -24646722 + (TAA)n Simple_repeat Simple_repeat 1 44 0 7 1560 1242 247 10 37 chr5 127890734 127891001 -24646258 + B4A SINE B4 2 265 -27 7 1560 240 35 0 0 chr5 127891001 127891030 -24646229 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1560 1242 247 10 37 chr5 127891030 127891061 -24646198 + B4A SINE B4 266 292 0 7 1560 261 253 0 0 chr5 127891069 127891156 -24646103 + (CATG)n Simple_repeat Simple_repeat 4 90 0 7 1560 369 0 0 0 chr5 127892032 127892073 -24645186 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1560 633 14 0 0 chr5 127892073 127892146 -24645113 + (GA)n Simple_repeat Simple_repeat 2 75 0 7 1560 425 217 49 104 chr5 127892283 127892427 -24644832 + B3A SINE B2 63 198 0 7 1560 256 210 260 32 chr5 127892435 127892558 -24644701 + L1MB7 LINE L1 5928 6078 -106 7 1560 754 267 16 22 chr5 127892613 127892797 -24644462 - B3 SINE B2 -6 210 28 7 1560 368 335 67 24 chr5 127892871 127893079 -24644180 - RMER15 LTR ERVL -23 552 336 7 1560 707 336 49 89 chr5 127893430 127893799 -24643460 + ORR1E LTR MaLR 2 355 -4 7 1560 267 273 14 70 chr5 127894273 127894344 -24642915 + MLT1H LTR MaLR 483 549 0 7 1560 1206 61 0 0 chr5 127894460 127894607 -24642652 + B1_Mus2 SINE Alu 1 147 0 7 1560 1900 164 29 45 chr5 127895265 127895642 -24641617 - ORR1D1 LTR MaLR -3 371 1 7 1560 195 42 0 0 chr5 127896129 127896153 -24641106 + (CTG)n Simple_repeat Simple_repeat 2 25 0 7 1560 721 305 107 20 chr5 127896806 127897104 -24640155 + MER58B DNA MER1_type 1 324 -17 7 1560 305 319 52 40 chr5 127897363 127897536 -24639723 - RMER15 LTR ERVL -62 513 339 7 1560 504 302 5 77 chr5 127898046 127898254 -24639005 + B3A SINE B2 1 193 -5 7 1560 200 306 0 0 chr5 127898655 127898704 -24638555 + L2b LINE L2 3320 3368 -7 7 1560 3154 70 5 0 chr5 127899067 127899465 -24637794 - MTB LTR MaLR 0 400 1 7 1560 468 0 0 0 chr5 127899979 127900031 -24637228 + (TTTTA)n Simple_repeat Simple_repeat 3 54 0 7 1560 1085 189 42 0 chr5 127900031 127900221 -24637038 - B3 SINE B2 -18 198 1 7 1560 1956 208 11 11 chr5 127900860 127901229 -24636030 + MTEa LTR MaLR 1 369 -10 7 1560 396 138 0 0 chr5 127901481 127901546 -24635713 + (TCC)n Simple_repeat Simple_repeat 2 66 0 7 1560 324 0 0 0 chr5 127902485 127902521 -24634738 + (TC)n Simple_repeat Simple_repeat 1 36 0 7 1560 236 281 0 15 chr5 127902521 127902586 -24634673 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 7 1560 722 184 0 6 chr5 127902588 127902763 -24634496 + (CA)n Simple_repeat Simple_repeat 2 175 0 7 1560 354 309 0 93 chr5 127903290 127903397 -24633862 + RSINE1 SINE B4 69 165 0 7 1560 1228 68 0 0 chr5 127903448 127903596 -24633663 + B1_Mus1 SINE Alu 1 148 0 7 1560 1061 176 70 5 chr5 127903684 127903884 -24633375 + B3 SINE B2 1 213 -3 7 1560 188 385 0 13 chr5 127903902 127903981 -24633278 + L2 LINE L2 2794 2871 -548 7 1560 230 309 71 10 chr5 127904246 127904344 -24632915 - MER3 DNA MER1_type -26 183 80 8 1560 240 191 0 0 chr5 127904367 127904451 -24632808 + CT-rich Low_complexity Low_complexity 1 84 0 8 1560 240 270 40 13 chr5 127904600 127904675 -24632584 - MER3 DNA MER1_type -127 82 6 8 1560 24 0 0 0 chr5 127904786 127904810 -24632449 + AT_rich Low_complexity Low_complexity 1 24 0 8 1560 224 77 26 0 chr5 127905009 127905048 -24632211 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 8 1560 781 52 0 0 chr5 127905052 127905149 -24632110 - B1_Mm SINE Alu 0 147 51 8 1560 424 241 0 0 chr5 127905129 127905212 -24632047 - RSINE1 SINE B4 -40 125 43 8 1560 318 106 0 0 chr5 127905235 127905282 -24631977 + (TTA)n Simple_repeat Simple_repeat 2 48 0 8 1560 288 70 0 0 chr5 127906401 127906444 -24630815 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 8 1560 1351 13 0 0 chr5 127906445 127906598 -24630661 - B2_Mm2 SINE B2 -41 154 2 8 1560 1297 191 130 8 chr5 127906915 127907217 -24630042 - MTD LTR MaLR -15 404 82 8 1560 216 97 0 0 chr5 127908157 127908188 -24629071 + (TATG)n Simple_repeat Simple_repeat 2 32 0 8 1560 783 196 0 0 chr5 127908236 127908404 -24628855 + (TA)n Simple_repeat Simple_repeat 2 169 0 8 1560 225 288 24 48 chr5 127908626 127908710 -24628549 + ID4_ SINE ID 1 82 -1 8 1560 477 317 78 78 chr5 127908716 127909137 -24628122 + L1M4 LINE L1 4672 5092 -1054 8 1560 607 235 25 0 chr5 127909141 127909260 -24627999 + B1F2 SINE Alu 5 126 -23 8 1560 444 147 0 0 chr5 127909260 127909335 -24627924 + (TGGA)n Simple_repeat Simple_repeat 4 78 0 8 1560 561 290 78 4 chr5 127909374 127909716 -24627543 + L1M4 LINE L1 5083 5451 -727 8 1560 963 242 41 0 chr5 127909935 127910129 -24627130 + B3 SINE B2 2 203 -13 8 1560 211 388 0 0 chr5 127910533 127910698 -24626561 + (GGATG)n Simple_repeat Simple_repeat 3 167 0 8 1560 656 311 88 91 chr5 127911177 127911595 -24625664 + MTD LTR MaLR 3 419 0 8 1560 309 222 0 31 chr5 127912694 127912759 -24624500 + B4 SINE B4 2 64 -228 8 1560 310 340 87 0 chr5 127912811 127912914 -24624345 + B4 SINE B4 181 292 0 8 1560 410 252 160 7 chr5 127913296 127913440 -24623819 - MLT1B LTR MaLR -34 356 191 8 1560 549 0 0 0 chr5 127913469 127913530 -24623729 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 8 1560 295 136 152 0 chr5 127913530 127913589 -24623670 - RMER19C LTR ERVK -543 68 1 8 1560 293 24 49 0 chr5 127914233 127914274 -24622985 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 8 1560 1251 48 0 0 chr5 127915330 127915476 -24621783 - B1_Mm SINE Alu 0 147 2 8 1560 220 328 0 49 chr5 127915895 127915956 -24621303 - ID4_ SINE ID -24 59 2 8 1560 281 319 97 0 chr5 127915966 127916079 -24621180 - PB1 SINE Alu -2 125 2 8 1560 520 214 19 0 chr5 127916929 127917032 -24620227 - RSINE1 SINE B4 -59 106 2 8 1560 305 24 24 0 chr5 127918235 127918277 -24618982 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1560 225 65 0 0 chr5 127918399 127918430 -24618829 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1560 279 0 0 0 chr5 127918480 127918511 -24618748 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1560 195 42 0 0 chr5 127918635 127918659 -24618600 + (CA)n Simple_repeat Simple_repeat 2 25 0 8 1560 256 307 26 13 chr5 127919031 127919107 -24618152 - PB1D10 SINE Alu -7 110 34 8 1560 564 247 111 33 chr5 127919130 127919310 -24617949 - B2_Mm2 SINE B2 -1 194 1 8 1560 1109 192 37 37 chr5 127919331 127919547 -24617712 - B3 SINE B2 0 216 1 8 1560 261 238 0 0 chr5 127919801 127919902 -24617357 + CT-rich Low_complexity Low_complexity 2 102 0 8 1560 231 263 0 26 chr5 127920295 127920373 -24616886 + (TA)n Simple_repeat Simple_repeat 2 77 0 8 1560 443 293 152 24 chr5 127920387 127920597 -24616662 - B4 SINE B4 -24 268 32 8 1560 825 268 14 32 chr5 127921000 127921216 -24616043 + B3 SINE B2 1 212 -4 8 1560 813 202 212 5 chr5 127922097 127922281 -24614978 + ID_B1 SINE B4 2 223 -1 8 1560 477 76 0 0 chr5 127923020 127923086 -24614173 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1560 669 306 0 6 chr5 127923132 127923290 -24613969 + RSINE1 SINE B4 3 159 -6 8 1560 22 0 0 0 chr5 127923313 127923335 -24613924 + AT_rich Low_complexity Low_complexity 1 22 0 8 1560 560 158 9 0 chr5 127923483 127923597 -24613662 + (TG)n Simple_repeat Simple_repeat 2 116 0 8 1560 372 23 0 0 chr5 127923603 127923646 -24613613 - HAL1-3A_ME LINE L1 -840 2018 1976 8 1560 244 279 0 0 chr5 127924216 127924277 -24612982 + CT-rich Low_complexity Low_complexity 6 66 0 8 1560 2718 71 0 19 chr5 127924849 127925221 -24612038 + L1Md_F2 LINE L1 6172 6536 -46 8 1560 865 283 24 64 chr5 127925352 127925650 -24611609 - B4 SINE B4 -6 286 1 8 1560 266 405 66 40 chr5 127925667 127925873 -24611386 - MLT1L LTR MaLR -206 404 198 8 1560 438 101 0 0 chr5 127925873 127925942 -24611317 + (CA)n Simple_repeat Simple_repeat 1 69 0 8 1560 266 405 66 40 chr5 127925942 127926085 -24611174 - MLT1L LTR MaLR -413 197 46 8 1561 1060 171 74 23 chr5 127926344 127926559 -24610700 + URR1A DNA MER1_type 1 226 0 8 1561 1718 248 14 25 chr5 127926794 127927154 -24610105 + ORR1D2 LTR MaLR 9 364 -6 8 1561 302 75 38 0 chr5 127927441 127927494 -24609765 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 8 1561 441 333 43 37 chr5 127927600 127927762 -24609497 + RSINE1 SINE B4 3 165 0 8 1561 291 252 123 28 chr5 127927825 127927931 -24609328 - MLT1K LTR MaLR -62 533 418 8 1561 1604 132 92 66 chr5 127929613 127929932 -24607327 - ORR1A3 LTR MaLR 0 419 1 8 1561 862 304 45 14 chr5 127930001 127930318 -24606941 - MLT1A0 LTR MaLR 0 467 43 8 1561 501 32 0 0 chr5 127931415 127931478 -24605781 + (TG)n Simple_repeat Simple_repeat 1 63 0 8 1561 1000 176 11 21 chr5 127931603 127931794 -24605465 - MTEa LTR MaLR -8 371 183 8 1561 587 219 49 113 chr5 127932185 127932410 -24604849 + Lx8 LINE L1 7236 7445 -28 8 1561 1276 101 51 0 chr5 127932410 127932588 -24604671 - B2_Mm2 SINE B2 -8 187 1 8 1561 587 219 49 113 chr5 127932588 127932609 -24604650 + Lx8 LINE L1 7446 7466 -7 8 1561 26 30 0 0 chr5 127932627 127932660 -24604599 + AT_rich Low_complexity Low_complexity 1 33 0 8 1561 1903 248 33 33 chr5 127932667 127933176 -24604083 - Lx5 LINE L1 -1 7049 6541 8 1561 250 293 0 24 chr5 127933987 127934071 -24603188 - ID4 SINE ID 0 83 2 8 1561 775 263 31 26 chr5 127934079 127934274 -24602985 - B3A SINE B2 -1 197 2 8 1561 508 218 80 29 chr5 127934284 127934421 -24602838 - B1F1 SINE Alu -5 144 1 8 1561 484 258 0 0 chr5 127935559 127935652 -24601607 + PB1D7 SINE Alu 23 115 -5 8 1561 231 273 18 0 chr5 127935652 127935707 -24601552 + GA-rich Low_complexity Low_complexity 5 60 0 8 1561 504 0 0 0 chr5 127936045 127936101 -24601158 + (TC)n Simple_repeat Simple_repeat 2 57 0 8 1561 231 125 0 0 chr5 127936103 127936143 -24601116 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 8 1561 772 252 125 9 chr5 127936771 127936987 -24600272 + MTEa LTR MaLR 1 241 -138 8 1561 217 245 0 0 chr5 127937042 127937091 -24600168 + (TATG)n Simple_repeat Simple_repeat 3 51 0 8 1561 633 295 35 60 chr5 127937092 127937291 -24599968 - B4A SINE B4 -3 289 95 8 1561 3284 34 2 193 chr5 127937291 127937830 -24599429 - RLTR10C LTR ERVK 0 436 1 8 1561 633 295 35 60 chr5 127937830 127937915 -24599344 - B4A SINE B4 -198 94 12 8 1561 252 86 0 0 chr5 127937923 127937958 -24599301 + (CCA)n Simple_repeat Simple_repeat 2 36 0 8 1561 1398 51 0 0 chr5 127938792 127938968 -24598291 - L1Md_T LINE L1 0 6582 6407 8 1561 8745 5 0 0 chr5 127939024 127940445 -24596814 - L1Md_A LINE L1 0 6582 5162 8 1561 744 231 72 39 chr5 127940998 127941178 -24596081 - B3A SINE B2 -11 187 2 8 1561 1079 248 73 118 chr5 127941938 127942377 -24594882 - MTD LTR MaLR 0 419 1 8 1561 861 217 16 32 chr5 127942645 127942831 -24594428 + B3A SINE B2 1 183 -15 8 1561 287 233 55 0 chr5 127942834 127942907 -24594352 + RCHARR1 DNA MER1_type 860 936 -38 8 1561 1269 48 0 0 chr5 127942907 127943054 -24594205 + B1_Mus1 SINE Alu 2 148 0 8 1561 325 363 55 58 chr5 127943850 127944230 -24593029 - L1ME4a LINE L1 -72 6052 5674 8 1561 2041 175 57 22 chr5 127944262 127944665 -24592594 - MTD LTR MaLR -2 417 1 8 1561 258 32 0 0 chr5 127945311 127945342 -24591917 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 8 1561 736 239 91 32 chr5 127946567 127946753 -24590506 - B3 SINE B2 -1 197 1 8 1561 642 250 176 56 chr5 127947360 127947372 -24589887 - B4 SINE B4 -12 280 270 8 1561 450 0 0 0 chr5 127947372 127947422 -24589837 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1561 642 250 176 56 chr5 127947422 127947659 -24589600 - B4 SINE B4 -23 269 1 8 1561 442 198 10 77 chr5 127947822 127947926 -24589333 + MTC LTR MaLR 18 114 -307 8 1561 320 284 136 103 chr5 127947973 127948342 -24588917 - MLT1B LTR MaLR -1 504 124 8 1561 689 228 129 38 chr5 127948984 127949194 -24588065 + B4 SINE B4 1 229 -63 8 1561 568 233 17 17 chr5 127949200 127949318 -24587941 + RSINE1 SINE B4 13 130 -35 8 1561 317 135 0 26 chr5 127949318 127949394 -24587865 + (CAGAGA)n Simple_repeat Simple_repeat 2 75 0 8 1561 324 0 0 0 chr5 127949394 127949430 -24587829 + (ACTG)n Simple_repeat Simple_repeat 1 36 0 8 1561 356 269 100 8 chr5 127949657 127949777 -24587482 - MLT1B LTR MaLR -230 160 30 8 1561 324 331 58 84 chr5 127949972 127950233 -24587026 + LTR16A1 LTR ERVL 202 455 -1 8 1561 279 0 0 0 chr5 127950505 127950536 -24586723 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8 1561 695 213 9 153 chr5 127951650 127951866 -24585393 + B3A SINE B2 2 186 -12 8 1561 49 43 0 0 chr5 127951875 127951945 -24585314 + AT_rich Low_complexity Low_complexity 1 70 0 8 1561 387 106 42 21 chr5 127952011 127952107 -24585152 + (CAGA)n Simple_repeat Simple_repeat 2 99 0 8 1561 282 116 0 0 chr5 127952713 127952756 -24584503 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 8 1561 345 271 98 30 chr5 127952756 127952889 -24584370 - B1F SINE Alu -6 143 2 9 1561 180 0 0 0 chr5 127953148 127953168 -24584091 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 9 1561 198 0 0 0 chr5 127953889 127953911 -24583348 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 9 1561 225 284 95 133 chr5 127953983 127954194 -24583065 + MamGypLTR1a LTR Gypsy 27 229 -555 9 1561 290 253 48 135 chr5 127954318 127954366 -24582893 + RMER17C LTR ERVK 38 85 -325 9 1561 871 92 33 0 chr5 127954366 127954519 -24582740 + (TCCCC)n Simple_repeat Simple_repeat 4 161 0 9 1561 290 253 48 135 chr5 127954519 127954804 -24582455 + RMER17C LTR ERVK 86 342 -68 9 1561 579 239 195 0 chr5 127955105 127955264 -24581995 + ID_B1 SINE B4 6 195 -29 9 1561 348 339 43 39 chr5 127955323 127955781 -24581478 + MLT1F1 LTR MaLR 42 568 -1 9 1561 276 326 66 81 chr5 127956343 127956540 -24580719 - ORR1E LTR MaLR -104 255 62 9 1561 319 0 65 0 chr5 127956748 127956794 -24580465 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 9 1561 252 0 0 0 chr5 127956794 127956821 -24580438 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 9 1561 360 240 0 26 chr5 127956838 127956915 -24580344 - B4 SINE B4 -215 77 3 9 1561 326 93 37 0 chr5 127958556 127958610 -24578649 + (CCCCCT)n Simple_repeat Simple_repeat 5 60 0 9 1561 447 331 132 47 chr5 127958619 127958936 -24578323 - MLT1J LTR MaLR -128 384 41 9 1561 452 283 79 97 chr5 127959113 127959340 -24577919 + B4A SINE B4 11 233 -59 9 1561 614 249 183 103 chr5 127959804 127960039 -24577220 - MTEb LTR MaLR -1 378 167 9 1561 234 0 0 0 chr5 127960039 127960065 -24577194 + (TGG)n Simple_repeat Simple_repeat 3 28 0 9 1561 614 249 183 103 chr5 127960065 127960179 -24577080 - MTEb LTR MaLR -213 166 3 9 1561 712 308 100 3 chr5 127960222 127960532 -24576727 + Lx8 LINE L1 7134 7473 0 9 1561 452 240 0 0 chr5 127960665 127960765 -24576494 + PB1D10 SINE Alu 16 115 -2 9 1561 663 233 182 6 chr5 127960917 127961065 -24576194 + B3 SINE B2 2 167 -49 9 1561 252 86 0 0 chr5 127961065 127961100 -24576159 + (CATA)n Simple_repeat Simple_repeat 4 38 0 9 1561 663 233 182 6 chr5 127961100 127961132 -24576127 + B3 SINE B2 168 213 -3 9 1561 22 0 0 0 chr5 127961132 127961154 -24576105 + AT_rich Low_complexity Low_complexity 1 22 0 9 1561 245 361 89 8 chr5 127961223 127961346 -24575913 + MIRc SINE MIR 111 243 -25 9 1561 434 322 128 36 chr5 127961362 127961746 -24575513 + MLT1F2 LTR MaLR 22 440 -120 9 1561 964 221 9 50 chr5 127961900 127962119 -24575140 + B3 SINE B2 2 211 -5 9 1561 203 351 78 9 chr5 127962938 127963053 -24574206 + MIR SINE MIR 31 153 -109 9 1561 417 208 6 28 chr5 127963131 127963309 -24573950 + (TTAGGG)n Simple_repeat Simple_repeat 5 178 0 9 1561 358 326 6 28 chr5 127963342 127963522 -24573737 + (TTAGGG)n Simple_repeat Simple_repeat 5 180 0 9 1561 834 205 98 16 chr5 127963677 127963870 -24573389 - B3 SINE B2 -7 209 1 9 1561 515 245 119 20 chr5 127963892 127964091 -24573168 - B3A SINE B2 0 216 2 9 1561 326 333 35 80 chr5 127965877 127966076 -24571183 - MLT1J LTR MaLR -45 467 278 9 1561 1168 58 0 0 chr5 127966153 127966291 -24570968 + B1_Mus1 SINE Alu 2 139 -9 9 1561 258 32 0 0 chr5 127966291 127966322 -24570937 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1561 231 195 49 0 chr5 127966366 127966407 -24570852 + B4 SINE B4 142 184 -108 9 1561 368 243 204 5 chr5 127966751 127966962 -24570297 - L1MB3 LINE L1 -2 6181 5929 9 1561 772 210 0 0 chr5 127967647 127967785 -24569474 + B3A SINE B2 14 151 -47 9 1561 306 266 113 17 chr5 127967819 127967934 -24569325 - LTR37A LTR ERV1 -111 315 190 9 1561 1096 250 130 14 chr5 127968066 127968358 -24568901 - MTEa LTR MaLR -12 367 42 9 1561 426 250 18 9 chr5 127969139 127969252 -24568007 - MER113 DNA MER1_type -109 412 299 9 1561 794 219 72 62 chr5 127969766 127969961 -24567298 + B3A SINE B2 2 198 0 9 1561 911 174 0 7 chr5 127969971 127970116 -24567143 + B1_Mur4 SINE Alu 3 146 -4 9 1561 405 0 0 0 chr5 127970117 127970162 -24567097 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 9 1561 894 248 31 5 chr5 127970712 127970907 -24566352 + B4 SINE B4 11 210 -82 9 1561 211 222 25 0 chr5 127971031 127971112 -24566147 + CT-rich Low_complexity Low_complexity 2 84 0 9 1561 543 193 11 28 chr5 127971132 127971313 -24565946 + CT-rich Low_complexity Low_complexity 1 178 0 9 1561 2226 166 76 10 chr5 127972238 127972633 -24564626 - MTC LTR MaLR 0 421 1 9 1561 269 318 62 31 chr5 127972829 127972959 -24564300 + B4A SINE B4 158 291 -1 9 1561 23 33 0 0 chr5 127973303 127973333 -24563926 + AT_rich Low_complexity Low_complexity 1 30 0 9 1561 1254 98 0 0 chr5 127974124 127974288 -24562971 + B2_Mm2 SINE B2 1 164 -31 9 1561 923 139 0 22 chr5 127974302 127974486 -24562773 + GA-rich Low_complexity Low_complexity 1 180 0 9 1561 358 286 164 5 chr5 127975143 127975350 -24561909 - MLT1A0 LTR MaLR -93 272 33 9 1561 1177 70 0 13 chr5 127975401 127975559 -24561700 + B2_Mm2 SINE B2 2 157 -38 9 1561 360 0 0 0 chr5 127975561 127975601 -24561658 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 9 1561 180 0 0 0 chr5 127975787 127975807 -24561452 + (GA)n Simple_repeat Simple_repeat 1 20 0 9 1561 230 91 0 0 chr5 127975993 127976026 -24561233 - L1M5 LINE L1 -593 5569 5537 9 1561 467 17 17 0 chr5 127976245 127976305 -24560954 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1561 536 300 11 19 chr5 127976347 127976511 -24560748 + ID_B1 SINE B4 101 263 -29 9 1561 210 178 22 0 chr5 127976906 127976951 -24560308 + CT-rich Low_complexity Low_complexity 1 46 0 9 1561 183 42 0 0 chr5 127977051 127977075 -24560184 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 9 1561 871 167 8 0 chr5 127978345 127978477 -24558782 + B1_Mur2 SINE Alu 3 135 -14 9 1561 279 0 0 0 chr5 127978478 127978509 -24558750 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1561 905 294 79 32 chr5 127978602 127978880 -24558379 - B4 SINE B4 0 292 2 9 1561 769 288 33 69 chr5 127979185 127979491 -24557768 - ORR1E LTR MaLR -64 295 1 9 1561 212 250 0 0 chr5 127980288 127980332 -24556927 - L2b LINE L2 -2 3373 3330 9 1561 2193 104 21 59 chr5 127980684 127981022 -24556237 - ORR1A2 LTR MaLR -2 325 1 9 1561 628 279 89 0 chr5 127981188 127981346 -24555913 + MTEb LTR MaLR 1 172 -207 9 1561 231 157 0 0 chr5 127982056 127982107 -24555152 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1561 244 153 16 79 chr5 127982118 127982187 -24555072 - B4 SINE B4 -1 291 224 9 1561 307 353 0 0 chr5 127982293 127982378 -24554881 - B3A SINE B2 -113 85 1 9 1561 554 347 41 31 chr5 127982384 127982408 -24554851 - B3A SINE B2 0 198 177 9 1561 330 67 0 0 chr5 127982408 127982453 -24554806 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1561 554 347 41 31 chr5 127982453 127982624 -24554635 - B3A SINE B2 -22 176 1 9 1561 718 326 26 35 chr5 127982624 127982855 -24554404 - B4 SINE B4 -61 231 3 9 1561 1055 185 103 0 chr5 127982877 127983072 -24554187 - B3 SINE B2 0 216 2 9 1561 1427 80 0 16 chr5 127983831 127984021 -24553238 - B2_Mm2 SINE B2 -8 187 1 9 1561 1376 52 6 0 chr5 127984140 127984313 -24552946 - B2_Mm2 SINE B2 -20 175 2 9 1561 477 0 0 0 chr5 127984314 127984367 -24552892 + (TTA)n Simple_repeat Simple_repeat 2 54 0 9 1561 745 280 18 46 chr5 127984547 127984764 -24552495 - ID_B1 SINE B4 -13 211 1 9 1561 515 273 94 0 chr5 127984832 127984960 -24552299 + B1_Mur2 SINE Alu 3 142 -7 9 1561 904 244 73 155 chr5 127985787 127986199 -24551060 + MTE2a LTR MaLR 1 378 -1 9 1561 615 262 117 12 chr5 127986847 127987009 -24550250 + B3A SINE B2 2 180 -18 9 1561 228 135 0 0 chr5 127987029 127987066 -24550193 + (CACG)n Simple_repeat Simple_repeat 3 39 0 9 1561 256 317 203 15 chr5 127987100 127987302 -24549957 - MLT1K LTR MaLR -347 248 9 9 1561 226 241 83 33 chr5 127987384 127987444 -24549815 - tRNA-Ala-GCY_ tRNA tRNA -7 68 6 9 1561 449 302 47 16 chr5 127987444 127987572 -24549687 - B1F1 SINE Alu -17 132 1 9 1561 258 279 23 133 chr5 127987572 127987618 -24549641 - MT2B2 LTR ERVL -426 158 127 9 1561 478 223 28 46 chr5 127988192 127988300 -24548959 + PB1D10 SINE Alu 5 110 -7 9 1561 216 0 0 0 chr5 127988510 127988534 -24548725 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 9 1561 363 272 43 17 chr5 127988679 127988795 -24548464 - B1F SINE Alu -9 140 22 9 1561 236 256 136 83 chr5 127988795 127988811 -24548448 + YREP_Mm Unknown Unknown 186 324 -1488 9 1561 186 43 0 0 chr5 127988815 127988838 -24548421 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 9 1561 675 245 82 0 chr5 127988908 127989055 -24548204 + B3A SINE B2 2 160 -38 9 1561 297 0 0 0 chr5 127989069 127989102 -24548157 + (TA)n Simple_repeat Simple_repeat 2 34 0 9 1561 450 219 221 25 chr5 127989960 127990082 -24547177 + B1_Mur1 SINE Alu 4 149 0 9 1561 23 33 0 0 chr5 127990088 127990118 -24547141 + AT_rich Low_complexity Low_complexity 1 30 0 9 1561 1515 116 0 9 chr5 127990450 127990668 -24546591 + URR1A DNA MER1_type 1 216 -10 9 1561 627 210 126 15 chr5 127991474 127991672 -24545587 - ORR1D2 LTR MaLR -2 368 149 9 1561 407 147 13 59 chr5 127991679 127991831 -24545428 + G-rich Low_complexity Low_complexity 4 148 0 9 1561 328 280 32 0 chr5 127991831 127991849 -24545410 - ORR1D2 LTR MaLR -185 185 167 9 1561 305 88 35 0 chr5 127991849 127991906 -24545353 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 9 1561 328 280 32 0 chr5 127991906 127991980 -24545279 - ORR1D2 LTR MaLR -204 166 91 9 1561 1371 149 23 0 chr5 127991975 127992189 -24545070 + URR1B DNA MER1_type 7 225 0 9 1561 619 158 0 29 chr5 127992189 127992293 -24544966 - ORR1D2 LTR MaLR -258 101 1 9 1561 219 69 0 0 chr5 127992299 127992328 -24544931 + (TGGA)n Simple_repeat Simple_repeat 1 29 0 9 1561 384 294 34 40 chr5 127992348 127992497 -24544762 + B4A SINE B4 11 158 -134 9 1561 439 155 19 0 chr5 127992620 127992723 -24544536 + (CA)n Simple_repeat Simple_repeat 1 105 0 9 1561 2005 110 117 18 chr5 127993911 127994245 -24543014 + ORR1B2 LTR MaLR 1 367 0 1 1561 229 234 65 122 chr5 127994432 127994479 -24542780 + ORR1E LTR MaLR 53 101 -258 1 1561 1136 145 120 0 chr5 127994479 127994679 -24542580 + URR1A DNA MER1_type 3 226 0 1 1561 229 234 65 122 chr5 127994679 127994738 -24542521 + ORR1E LTR MaLR 102 153 -206 1 1561 1115 107 11 0 chr5 127994915 127995092 -24542167 + (GGGA)n Simple_repeat Simple_repeat 1 179 0 1 1561 629 260 44 33 chr5 127995310 127995493 -24541766 - B4 SINE B4 -14 278 94 1 1561 616 246 0 0 chr5 127995502 127995628 -24541631 + B1_Mur1 SINE Alu 24 149 0 1 1561 569 241 0 0 chr5 127995626 127995734 -24541525 - B4 SINE B4 -183 109 2 1 1561 230 230 246 9 chr5 127996005 127996119 -24541140 - L1M2 LINE L1 -480 5817 5677 1 1561 320 311 59 7 chr5 127996240 127996376 -24540883 - MIRb SINE MIR -98 170 28 1 1561 282 148 0 0 chr5 127997004 127997058 -24540201 + (CACCAT)n Simple_repeat Simple_repeat 4 57 0 1 1561 207 100 0 0 chr5 127997219 127997249 -24540010 + (ATGGTG)n Simple_repeat Simple_repeat 1 30 0 1 1561 1297 165 36 18 chr5 127997418 127997640 -24539619 - URR1A DNA MER1_type 0 226 1 1 1561 563 178 122 0 chr5 127998035 127998142 -24539117 - B1_Mur3 SINE Alu -28 121 2 1 1561 350 238 58 29 chr5 127998052 127998156 -24539103 - MT2B LTR ERVL -344 257 151 1 1561 309 302 88 71 chr5 127998143 127998325 -24538934 + MER102a DNA MER1_type 130 314 -16 1 1561 330 344 80 12 chr5 127998538 127998700 -24538559 + L1MB8 LINE L1 5939 6111 -67 1 1561 319 301 38 44 chr5 127998758 127998918 -24538341 + HAL1-3A_ME LINE L1 2284 2442 -416 1 1561 384 0 35 18 chr5 127999136 127999193 -24538066 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1561 279 315 117 47 chr5 127999281 127999659 -24537600 + MLT1D LTR MaLR 34 466 -39 1 1561 399 311 29 23 chr5 127999829 128000000 -24537259 + L1M2 LINE L1 4708 4879 -1264 1 1561 1641 299 52 60 chr5 128000008 128001040 -24536219 + L1MA5A LINE L1 4835 5930 -367 1 1561 452 65 21 42 chr5 128001067 128001163 -24536096 + (CAGA)n Simple_repeat Simple_repeat 2 95 0 2 1561 182 62 0 30 chr5 128001179 128001212 -24536047 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1561 621 96 0 0 chr5 128001214 128001308 -24535951 + (GA)n Simple_repeat Simple_repeat 2 95 0 4 1561 507 264 107 27 chr5 128001329 128001516 -24535743 + Lx8 LINE L1 7188 7389 -84 5 1561 205 203 17 17 chr5 128002160 128002220 -24535039 + C-rich Low_complexity Low_complexity 6 65 0 6 1561 570 293 122 132 chr5 128002233 128002528 -24534731 + B4 SINE B4 1 292 0 7 1561 444 101 34 0 chr5 128002912 128003001 -24534258 + (GA)n Simple_repeat Simple_repeat 2 93 0 8 1561 429 211 52 17 chr5 128003001 128003117 -24534142 - Lx8 LINE L1 -1004 6469 6350 9 1561 204 227 23 0 chr5 128004284 128004328 -24532931 + GA-rich Low_complexity Low_complexity 1 45 0 1 1561 204 97 0 0 chr5 128004389 128004420 -24532839 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 1 1561 220 250 36 95 chr5 128004420 128004495 -24532764 - B1_Mus1 SINE Alu -47 101 31 1 1561 364 257 0 121 chr5 128004537 128004661 -24532598 + MT2B LTR ERVL 149 257 -344 1 1561 782 146 85 0 chr5 128004565 128004695 -24532564 + B1_Mur4 SINE Alu 10 150 0 1 1561 1476 222 21 36 chr5 128004712 128005044 -24532215 - MTD LTR MaLR -92 327 1 1 1561 504 0 0 0 chr5 128005121 128005177 -24532082 + (GA)n Simple_repeat Simple_repeat 1 56 0 1 1561 847 219 223 0 chr5 128006241 128006456 -24530803 + B4A SINE B4 2 264 -28 1 1561 423 0 0 0 chr5 128006468 128006515 -24530744 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1561 1027 224 15 0 chr5 128006996 128007197 -24530062 - ID_B1 SINE B4 -19 205 2 1 1561 792 189 13 10 chr5 128007346 128007646 -24529613 + GA-rich Low_complexity Low_complexity 1 301 0 2 1561 354 320 55 92 chr5 128007762 128008055 -24529204 - ORR1D2 LTR MaLR -2 368 87 2 1561 182 319 0 0 chr5 128008234 128008281 -24528978 - L2a LINE L2 -327 3099 3053 2 1561 1245 55 0 0 chr5 128009625 128009771 -24527488 + B1_Mus1 SINE Alu 2 147 -1 2 1561 255 125 0 0 chr5 128009771 128009811 -24527448 + (GA)n Simple_repeat Simple_repeat 1 40 0 2 1561 1941 201 40 26 chr5 128010518 128010947 -24526312 - Lx5 LINE L1 0 7050 6616 2 1561 10637 81 3 3 chr5 128011355 128013572 -24523687 - L1_Mus1 LINE L1 -2 6652 4354 2 1561 204 179 0 0 chr5 128014136 128014175 -24523084 + CT-rich Low_complexity Low_complexity 4 42 0 2 1561 393 22 0 0 chr5 128014177 128014223 -24523036 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1561 381 43 0 0 chr5 128014736 128014783 -24522476 + (TGG)n Simple_repeat Simple_repeat 1 47 0 2 1561 261 0 0 0 chr5 128014783 128014812 -24522447 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1561 333 0 0 0 chr5 128015207 128015244 -24522015 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1561 273 289 40 0 chr5 128015531 128015607 -24521652 + ID4 SINE ID 1 79 -4 3 1561 272 323 196 20 chr5 128015707 128016013 -24521246 - MLT1D LTR MaLR -69 436 77 3 1561 1469 201 150 22 chr5 128016025 128016386 -24520873 - MTD LTR MaLR -11 408 2 3 1561 259 242 20 0 chr5 128016915 128017014 -24520245 + CT-rich Low_complexity Low_complexity 3 103 0 3 1561 303 356 156 33 chr5 128017948 128018218 -24519041 - LTR40b LTR ERVL 0 462 160 3 1561 4474 12 0 12 chr5 128018329 128018828 -24518431 + MT2_Mm LTR ERVL 1 493 0 3 1561 21170 9 1 0 chr5 128018828 128021249 -24516010 + MERVL-int LTR ERVL 1 2424 -3061 3 1561 2705 40 3 14 chr5 128021216 128021570 -24515689 + MERVL-int LTR ERVL 5011 5360 -125 3 1561 382 179 46 35 chr5 128021570 128021657 -24515602 + ORR1A3-int LTR MaLR 553 640 -1323 3 1561 305 0 0 0 chr5 128021657 128021695 -24515564 + MERVL-int LTR ERVL 5448 5485 0 3 1561 4474 12 0 12 chr5 128021695 128022194 -24515065 + MT2_Mm LTR ERVL 1 493 0 3 1561 767 239 94 0 chr5 128022411 128022591 -24514668 - B3 SINE B2 -19 197 1 3 1561 266 0 29 0 chr5 128022643 128022677 -24514582 + (TA)n Simple_repeat Simple_repeat 2 36 0 4 1561 180 219 0 0 chr5 128022810 128022851 -24514408 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1561 422 209 270 0 chr5 128024295 128024410 -24512849 - ORR1E LTR MaLR -212 147 2 4 1561 517 288 14 0 chr5 128024446 128024585 -24512674 + B1F SINE Alu 1 141 -8 4 1561 493 258 7 64 chr5 128024922 128024935 -24512324 - RSINE1 SINE B4 -30 135 126 4 1561 471 18 0 0 chr5 128024935 128024991 -24512268 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1561 493 258 7 64 chr5 128024991 128025118 -24512141 - RSINE1 SINE B4 -40 125 4 4 1561 370 312 77 14 chr5 128025199 128025342 -24511917 + MER20 DNA MER1_type 9 160 -59 4 1561 1471 65 16 0 chr5 128025376 128025562 -24511697 + B2_Mm2 SINE B2 2 190 -5 4 1561 260 281 67 32 chr5 128025627 128025794 -24511465 + MIRm SINE MIR 6 171 -37 4 1561 310 298 129 69 chr5 128025881 128026083 -24511176 - MER20 DNA MER1_type -5 214 1 4 1561 181 333 49 12 chr5 128026130 128026212 -24511047 - L2 LINE L2 -341 3078 2994 5 1561 2114 132 6 18 chr5 128026331 128026662 -24510597 - ORR1A2 LTR MaLR 0 327 1 5 1561 185 275 104 38 chr5 128027229 128027335 -24509924 + MIRc SINE MIR 76 188 -80 5 1561 185 338 40 13 chr5 128028851 128028926 -24508333 - L2b LINE L2 -92 3283 3207 5 1561 822 48 0 0 chr5 128029124 128029227 -24508032 + (TC)n Simple_repeat Simple_repeat 1 103 0 5 1561 271 315 45 0 chr5 128029284 128029395 -24507864 + (TCCA)n Simple_repeat Simple_repeat 1 116 0 5 1561 186 171 0 0 chr5 128029482 128029523 -24507736 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 5 1561 474 240 0 0 chr5 128029581 128029731 -24507528 + (TCCA)n Simple_repeat Simple_repeat 1 150 0 5 1561 606 263 12 0 chr5 128029742 128030087 -24507172 + (TCCA)n Simple_repeat Simple_repeat 1 349 0 5 1561 216 268 0 85 chr5 128030644 128030738 -24506521 + GA-rich Low_complexity Low_complexity 4 89 0 5 1561 970 291 34 4 chr5 128031460 128031726 -24505533 + B4A SINE B4 1 274 -18 5 1561 613 262 112 146 chr5 128032698 128032794 -24504465 + B4 SINE B4 4 86 -206 5 1561 1136 95 7 0 chr5 128032794 128032941 -24504318 + B1_Mur3 SINE Alu 1 148 -1 6 1561 613 262 112 146 chr5 128032941 128033139 -24504120 + B4 SINE B4 87 288 -4 5 1561 189 0 0 0 chr5 128033931 128033952 -24503307 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 6 1561 1290 56 0 0 chr5 128033952 128034112 -24503147 - B2_Mm2 SINE B2 -34 161 2 6 1561 2793 53 24 0 chr5 128036544 128036882 -24500377 - ORR1A1 LTR MaLR 0 346 1 6 1561 271 343 95 43 chr5 128037163 128037373 -24499886 - MLT1E3 LTR MaLR -146 478 258 6 1561 1303 280 11 7 chr5 128037757 128038041 -24499218 + B4A SINE B4 6 290 -2 6 1561 1143 135 84 28 chr5 128038153 128038367 -24498892 + URR1A DNA MER1_type 1 226 0 6 1561 1074 140 0 0 chr5 128039659 128039838 -24497421 + (TCC)n Simple_repeat Simple_repeat 2 180 0 6 1561 584 271 0 46 chr5 128040393 128040544 -24496715 - ID_B1 SINE B4 -1 223 80 6 1561 209 161 0 0 chr5 128040744 128040775 -24496484 + (CAG)n Simple_repeat Simple_repeat 2 32 0 6 1561 414 0 0 0 chr5 128040775 128040821 -24496438 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1561 508 273 7 50 chr5 128040823 128040962 -24496297 - RSINE1 SINE B4 -25 140 8 7 1561 497 65 11 21 chr5 128041926 128042021 -24495238 - L1Md_F2 LINE L1 0 6582 6489 7 1561 2494 219 48 0 chr5 128042214 128042717 -24494542 - MT2A LTR ERVL -6 527 1 7 1561 267 253 22 67 chr5 128042740 128042829 -24494430 - B1_Mus1 SINE Alu -55 93 9 7 1561 609 259 6 60 chr5 128042753 128042921 -24494338 - ID_B1 SINE B4 -63 161 3 7 1561 210 105 0 0 chr5 128044628 128044666 -24492593 + (T)n Simple_repeat Simple_repeat 1 38 0 7 1561 24 32 0 0 chr5 128044799 128044830 -24492429 + AT_rich Low_complexity Low_complexity 1 31 0 7 1561 188 0 74 0 chr5 128045299 128045326 -24491933 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1561 1351 199 56 28 chr5 128046326 128046610 -24490649 - MTEa LTR MaLR -82 297 6 7 1561 428 298 129 19 chr5 128046682 128046938 -24490321 + B4A SINE B4 9 292 0 8 1561 376 274 426 46 chr5 128047515 128047710 -24489549 + B4 SINE B4 2 270 -22 8 1561 342 98 0 0 chr5 128047711 128047762 -24489497 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1561 409 238 97 60 chr5 128048362 128048496 -24488763 - B1F SINE Alu -5 144 6 8 1561 3450 229 58 13 chr5 128048498 128049442 -24487817 + Lx8 LINE L1 6478 7464 -9 8 1561 1249 96 17 6 chr5 128049481 128049659 -24487600 + B2_Mm2 SINE B2 1 180 -15 8 1561 69 33 0 0 chr5 128049665 128049755 -24487504 + AT_rich Low_complexity Low_complexity 1 90 0 8 1561 180 0 0 0 chr5 128050475 128050495 -24486764 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1561 277 326 10 30 chr5 128050771 128050872 -24486387 - MLT1C LTR MaLR -316 151 53 8 1561 511 265 7 29 chr5 128051056 128051196 -24486063 - MTEa LTR MaLR -4 375 239 8 1561 799 289 39 66 chr5 128052008 128052342 -24484917 - MTD LTR MaLR -94 325 1 9 1561 627 291 66 0 chr5 128054769 128054920 -24482339 + RSINE1 SINE B4 4 164 -1 9 1561 617 176 31 16 chr5 128055046 128055300 -24481959 + (TG)n Simple_repeat Simple_repeat 1 257 0 9 1561 220 120 40 0 chr5 128055320 128055370 -24481889 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1561 669 252 0 47 chr5 128055443 128055614 -24481645 - RSINE1 SINE B4 0 165 3 9 1561 350 187 26 20 chr5 128056717 128056870 -24480389 + (TAGA)n Simple_repeat Simple_repeat 4 157 0 9 1561 380 200 16 16 chr5 128056918 128057040 -24480219 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 9 195 2089 117 38 3 chr5 128057040 128057382 -24479877 + RLTR15 LTR ERVK 1 354 -5 9 1562 240 184 0 0 chr5 128057384 128057433 -24479826 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 9 1562 659 74 60 20 chr5 128057452 128057603 -24479656 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 9 1562 284 216 351 53 chr5 128057937 128058094 -24479165 + B3A SINE B2 6 209 -7 9 1562 185 196 20 0 chr5 128058094 128058145 -24479114 + (CAATA)n Simple_repeat Simple_repeat 4 55 0 9 1562 261 245 126 11 chr5 128058379 128058474 -24478785 + ID_B1 SINE B4 84 189 -35 1 1562 224 265 0 0 chr5 128059569 128059618 -24477641 + G-rich Low_complexity Low_complexity 2 50 0 1 1562 204 179 0 0 chr5 128059634 128059673 -24477586 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1562 487 193 131 25 chr5 128059779 128059901 -24477358 - MTEb LTR MaLR 0 379 245 1 1562 314 299 124 38 chr5 128059927 128060136 -24477123 + L1MB7 LINE L1 5902 6128 -56 1 1562 212 220 20 0 chr5 128060466 128060516 -24476743 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1 1562 1186 82 0 0 chr5 128060520 128060666 -24476593 - B1_Mus2 SINE Alu 0 147 2 1 1562 696 272 78 19 chr5 128060793 128060999 -24476260 - ID_B1 SINE B4 -5 219 2 1 1562 257 293 19 48 chr5 128061290 128061394 -24475865 - MLT1H LTR MaLR -445 104 4 1 1562 282 299 126 51 chr5 128061756 128061971 -24475288 + MLT1B LTR MaLR 135 365 -25 1 1562 1159 62 21 0 chr5 128062031 128062176 -24475083 + B1_Mus1 SINE Alu 1 148 0 1 1562 1282 103 33 0 chr5 128062373 128062557 -24474702 + B2_Mm1t SINE B2 2 191 -2 1 1562 2277 111 84 14 chr5 128062736 128063093 -24474166 - MTC LTR MaLR -39 382 1 1 1562 272 272 40 88 chr5 128064410 128064436 -24472823 - RLTR25B LTR ERVK -465 563 445 1 1562 597 182 0 0 chr5 128064436 128064535 -24472724 - B1_Mur1 SINE Alu -7 142 44 1 1562 1130 68 7 7 chr5 128065283 128065430 -24471829 + B1_Mus2 SINE Alu 1 147 0 1 1562 221 75 0 24 chr5 128065430 128065471 -24471788 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1 1562 369 241 128 28 chr5 128065702 128065843 -24471416 - L1M2 LINE L1 -752 5548 5394 1 1562 689 263 106 0 chr5 128065937 128066116 -24471143 - MTE2a LTR MaLR 0 379 182 1 1562 789 254 57 16 chr5 128066142 128066334 -24470925 - B3 SINE B2 -6 210 11 1 1562 538 193 119 0 chr5 128066344 128066453 -24470806 - MTE2a LTR MaLR -200 179 58 1 1562 413 269 88 59 chr5 128066576 128066746 -24470513 - ORR1E LTR MaLR -184 175 1 1 1562 724 203 189 16 chr5 128068040 128068225 -24469034 + ID_B1 SINE B4 5 221 -3 1 1562 468 218 324 7 chr5 128068364 128068512 -24468747 - B3A SINE B2 -3 195 1 1 1562 519 243 36 29 chr5 128068521 128068661 -24468598 - B1F SINE Alu -8 141 1 1 1562 365 286 93 21 chr5 128068724 128068917 -24468342 + BLACKJACK DNA AcHobo 1234 1440 -1504 1 1562 674 102 78 0 chr5 128068932 128069060 -24468199 - RMER17B LTR ERVK -495 463 326 1 1562 912 171 209 6 chr5 128069083 128069260 -24467999 - B3 SINE B2 0 216 4 1 1562 705 237 130 10 chr5 128069268 128069460 -24467799 - B3 SINE B2 0 216 2 1 1562 817 331 103 39 chr5 128069736 128070252 -24467007 + BLACKJACK DNA AcHobo 1640 2188 -756 1 1562 351 0 0 0 chr5 128070336 128070375 -24466884 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1562 486 245 20 0 chr5 128070404 128070502 -24466757 - B3A SINE B2 -94 104 5 1 1562 433 210 44 4 chr5 128070512 128070612 -24466647 - B1_Mus2 SINE Alu -8 139 13 1 1562 249 267 51 51 chr5 128070748 128070886 -24466373 + BLACKJACK DNA AcHobo 2703 2840 -104 1 1562 463 244 269 0 chr5 128070909 128071069 -24466190 + B3 SINE B2 1 203 -13 1 1562 879 217 9 96 chr5 128071087 128071316 -24465943 + B3 SINE B2 1 209 -7 1 1562 287 253 80 0 chr5 128071335 128071410 -24465849 + B1_Mur1 SINE Alu 35 115 -34 1 1562 282 152 202 48 chr5 128071597 128071701 -24465558 + Lx LINE L1 6528 6647 -7 1 1562 426 39 0 0 chr5 128071726 128071778 -24465481 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1 1562 1308 45 0 0 chr5 128071778 128071935 -24465324 - B2_Mm1a SINE B2 -35 158 2 1 1562 525 226 112 8 chr5 128073334 128073468 -24463791 - B3 SINE B2 -4 212 65 1 1562 856 139 20 59 chr5 128074610 128074763 -24462496 + B1_Mus1 SINE Alu 2 148 0 1 1562 254 245 0 0 chr5 128075669 128075718 -24461541 - RSINE1 SINE B4 -114 51 3 1 1562 365 271 52 16 chr5 128076348 128076463 -24460796 + B1F2 SINE Alu 2 117 0 1 1562 605 135 527 0 chr5 128077599 128077747 -24459512 - URR1A DNA MER1_type 0 226 1 1 1562 699 148 79 32 chr5 128079481 128079607 -24457652 + B1_Mur4 SINE Alu 6 137 -13 1 1562 212 171 0 0 chr5 128079880 128079915 -24457344 + PB1D7 SINE Alu 70 104 -16 1 1562 438 322 69 7 chr5 128079920 128080064 -24457195 + RSINE1 SINE B4 3 155 -10 1 1562 264 324 0 13 chr5 128081179 128081254 -24456005 + PB1D7 SINE Alu 1 74 -46 1 1562 1004 183 99 0 chr5 128081273 128081464 -24455795 + B3 SINE B2 1 210 -6 1 1562 1650 21 16 0 chr5 128081489 128081678 -24455581 + B2_Mm1a SINE B2 2 193 0 1 1562 684 124 0 37 chr5 128082643 128082752 -24454507 - B2_Mm2 SINE B2 -90 105 1 1 1562 229 329 26 0 chr5 128082789 128082865 -24454394 + Lx8 LINE L1 7198 7275 -198 1 1562 590 264 35 28 chr5 128083283 128083427 -24453832 + RSINE1 SINE B4 6 150 -15 1 1562 272 236 20 0 chr5 128083573 128083640 -24453619 + B3A SINE B2 1 73 -120 1 1562 633 264 85 66 chr5 128085966 128086005 -24451254 - B3 SINE B2 -1 215 187 1 1562 446 214 181 8 chr5 128086005 128086132 -24451127 - B1_Mur2 SINE Alu 0 149 1 1 1562 633 264 85 66 chr5 128086132 128086303 -24450956 - B3 SINE B2 -30 186 1 1 1562 1127 141 56 86 chr5 128086680 128086778 -24450481 + URR1A DNA MER1_type 1 99 -127 1 1562 1189 51 0 0 chr5 128086778 128086916 -24450343 + B1_Mus2 SINE Alu 2 139 -8 1 1562 1127 141 56 86 chr5 128086916 128087050 -24450209 + URR1A DNA MER1_type 100 226 0 1 1562 349 292 40 89 chr5 128087069 128087193 -24450066 + PB1D7 SINE Alu 3 120 0 1 1562 299 304 13 0 chr5 128090052 128090131 -24447128 + PB1D10 SINE Alu 12 91 -26 1 1562 326 268 12 12 chr5 128090438 128090521 -24446738 - ID4_ SINE ID 0 83 1 1 1562 465 281 10 0 chr5 128090909 128091005 -24446254 - PB1 SINE Alu -29 98 2 1 1562 457 286 23 38 chr5 128091700 128091831 -24445428 - ID_B1 SINE B4 -1 223 95 1 1562 553 280 52 20 chr5 128092663 128092816 -24444443 + RSINE1 SINE B4 8 165 0 1 1562 491 103 0 37 chr5 128092854 128092935 -24444324 + PB1D9 SINE Alu 42 119 -1 1 1562 370 281 17 9 chr5 128093144 128093248 -24444011 + PB1D7 SINE Alu 5 110 -10 1 1562 207 0 0 0 chr5 128093248 128093271 -24443988 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1 1562 299 275 49 42 chr5 128093307 128093451 -24443808 + B1_Mus2 SINE Alu 2 146 -1 1 1562 537 162 64 37 chr5 128093480 128093589 -24443670 + ID_B1 SINE B4 113 224 0 1 1562 1006 237 203 20 chr5 128093929 128094278 -24442981 + RCHARR1 DNA MER1_type 46 458 -516 1 1562 550 189 257 12 chr5 128094293 128094464 -24442795 + RCHARR1 DNA MER1_type 760 972 -2 1 1562 1208 90 6 0 chr5 128094474 128094640 -24442619 + B2_Mm1t SINE B2 1 167 -26 1 1562 311 109 0 21 chr5 128094657 128094704 -24442555 + B2_Mm2 SINE B2 47 92 -103 1 1562 423 212 89 19 chr5 128094793 128094911 -24442348 - MTE2b LTR MaLR -5 374 249 1 1562 344 189 53 53 chr5 128094933 128095028 -24442231 - MTE2b LTR MaLR -279 95 1 1 1562 313 330 55 0 chr5 128095160 128095251 -24442008 - PB1D7 SINE Alu 0 120 25 1 1562 1202 74 0 0 chr5 128095735 128095883 -24441376 + B1_Mus1 SINE Alu 1 148 0 1 1562 209 194 0 0 chr5 128095883 128095919 -24441340 + GA-rich Low_complexity Low_complexity 2 37 0 1 1562 1223 47 0 13 chr5 128098148 128098298 -24438961 - B1_Mus1 SINE Alu 0 148 1 1 1562 270 0 0 0 chr5 128098308 128098338 -24438921 + (TTC)n Simple_repeat Simple_repeat 2 31 0 1 1562 22 0 0 0 chr5 128098338 128098360 -24438899 + AT_rich Low_complexity Low_complexity 1 22 0 1 1562 1032 211 5 9 chr5 128098360 128098570 -24438689 + B3 SINE B2 2 210 -6 1 1562 848 149 45 0 chr5 128098578 128098712 -24438547 + B1_Mur2 SINE Alu 10 149 0 1 1562 429 96 60 0 chr5 128098713 128098796 -24438463 + A-rich Low_complexity Low_complexity 2 89 0 1 1562 394 234 25 90 chr5 128098886 128099008 -24438251 + RSINE1 SINE B4 3 116 -49 1 1562 1544 189 143 20 chr5 128099366 128099722 -24437537 + MTD LTR MaLR 8 407 -12 1 1562 723 267 22 17 chr5 128099806 128099985 -24437274 - B3A SINE B2 -17 181 2 1 1562 1987 111 175 0 chr5 128100140 128100465 -24436794 + ORR1B1 LTR MaLR 5 386 -8 1 1562 595 283 5 59 chr5 128100603 128100806 -24436453 + B3A SINE B2 4 195 -3 1 1562 691 294 39 0 chr5 128101411 128101615 -24435644 + RMER15 LTR ERVL 347 558 -17 1 1562 362 261 11 33 chr5 128102257 128102348 -24434911 - B1_Mur3 SINE Alu -59 90 2 1 1562 627 252 97 0 chr5 128102353 128102508 -24434751 - B3A SINE B2 -28 170 1 1 1562 1226 100 5 59 chr5 128102527 128102571 -24434688 - B2_Mm1t SINE B2 -2 191 159 1 1562 333 0 0 0 chr5 128102571 128102608 -24434651 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1 1562 1226 100 5 59 chr5 128102608 128102765 -24434494 - B2_Mm1t SINE B2 -35 158 1 1 1562 351 238 29 10 chr5 128102808 128102910 -24434349 + ID_B1 SINE B4 113 216 -8 1 1562 758 204 7 13 chr5 128103053 128103202 -24434057 + RSINE1 SINE B4 1 148 -17 1 1562 243 61 0 0 chr5 128103208 128103241 -24434018 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1562 735 117 0 18 chr5 128103545 128103658 -24433601 + PB1D9 SINE Alu 9 119 -1 1 1562 511 308 26 36 chr5 128104259 128104451 -24432808 - B3A SINE B2 -7 191 2 1 1562 807 269 20 25 chr5 128104704 128104716 -24432543 - B3A SINE B2 0 198 187 1 1562 198 0 0 0 chr5 128104716 128104738 -24432521 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1562 807 269 20 25 chr5 128104738 128104923 -24432336 - B3A SINE B2 -12 186 3 1 1562 798 236 36 25 chr5 128104933 128105129 -24432130 - B3A SINE B2 0 198 1 1 1562 237 65 0 0 chr5 128105147 128105178 -24432081 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1562 555 281 36 7 chr5 128105200 128105340 -24431919 - RSINE1 SINE B4 -18 147 4 1 1562 725 272 47 6 chr5 128105467 128105637 -24431622 + ID_B1 SINE B4 1 177 -47 2 1562 2531 153 21 19 chr5 128105649 128105753 -24431506 + MTC LTR MaLR 1 99 -322 2 1562 3170 126 48 2 chr5 128105753 128106254 -24431005 + RLTR28 LTR ERVL 1 524 0 2 1562 2531 153 21 19 chr5 128106254 128106569 -24430690 + MTC LTR MaLR 100 421 0 2 1562 412 216 81 57 chr5 128106587 128106710 -24430549 + B1_Mur4 SINE Alu 25 150 0 2 1562 201 121 0 0 chr5 128106711 128106744 -24430515 + (ATG)n Simple_repeat Simple_repeat 3 35 0 2 1562 1675 171 76 6 chr5 128106751 128107081 -24430178 - MTD LTR MaLR -54 365 13 2 1562 198 0 0 0 chr5 128107297 128107319 -24429940 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 2 1562 594 223 78 162 chr5 128107435 128107658 -24429601 - ORR1E LTR MaLR -99 275 67 2 1562 1150 68 0 0 chr5 128107658 128107804 -24429455 + B1_Mus2 SINE Alu 2 147 0 2 1562 594 220 65 174 chr5 128107804 128107889 -24429370 - ORR1E LTR MaLR -283 76 1 2 1562 222 136 0 0 chr5 128108006 128108050 -24429209 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 1562 688 216 87 13 chr5 128108755 128108905 -24428354 + B3 SINE B2 1 161 -55 2 1562 320 286 99 83 chr5 128109326 128109352 -24427907 - CYRA11_Mm Unknown Y-chromosome -198 419 246 2 1562 909 140 119 83 chr5 128109352 128109486 -24427773 + URR1A DNA MER1_type 1 155 -71 2 1562 1161 109 60 5 chr5 128109486 128109670 -24427589 + B2_Mm2 SINE B2 2 195 0 2 1562 909 140 119 83 chr5 128109670 128109753 -24427506 + URR1A DNA MER1_type 156 226 0 2 1562 216 0 0 0 chr5 128109795 128109819 -24427440 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2 1562 862 39 0 0 chr5 128109820 128109923 -24427336 - B1_Mus1 SINE Alu -11 137 35 2 1562 690 238 7 20 chr5 128110014 128110160 -24427099 - B1_Mur1 SINE Alu 0 149 6 2 1562 503 183 211 24 chr5 128110201 128110324 -24426935 + B1_Mur4 SINE Alu 5 150 0 2 1562 797 132 8 23 chr5 128110377 128110509 -24426750 + B1_Mus1 SINE Alu 19 148 0 2 1562 298 350 0 39 chr5 128110526 128110630 -24426629 - PB1D10 SINE Alu -17 100 1 2 1562 270 284 26 105 chr5 128110842 128110956 -24426303 + MLT1J LTR MaLR 190 294 -218 2 1562 697 235 33 45 chr5 128110996 128111181 -24426078 + B3A SINE B2 5 211 -5 2 1562 755 120 0 16 chr5 128111185 128111312 -24425947 + (GAAAA)n Simple_repeat Simple_repeat 3 127 0 2 1562 310 321 0 0 chr5 128111943 128112024 -24425235 - B1F SINE Alu -67 82 2 2 1562 198 0 0 0 chr5 128112414 128112436 -24424823 + (CCCCCA)n Simple_repeat Simple_repeat 4 25 0 2 1562 276 221 0 0 chr5 128112478 128112555 -24424704 + C-rich Low_complexity Low_complexity 5 81 0 2 1562 22 0 0 0 chr5 128113344 128113366 -24423893 + GC_rich Low_complexity Low_complexity 1 22 0 2 1562 643 244 60 51 chr5 128113732 128113948 -24423311 + ID_B1 SINE B4 4 221 -3 2 1562 247 341 121 42 chr5 128114231 128114470 -24422789 - LTR48 LTR ERV1 -39 748 491 2 1562 772 228 5 78 chr5 128114575 128114623 -24422636 - B2_Mm2 SINE B2 -4 191 149 2 1562 1713 16 0 0 chr5 128114623 128114811 -24422448 - B2_Mm1a SINE B2 -5 188 1 2 1562 810 149 52 18 chr5 128114811 128114967 -24422292 - B3 SINE B2 -47 148 2 2 1562 415 209 11 23 chr5 128115164 128115252 -24422007 + B4A SINE B4 1 87 -205 2 1562 402 287 16 27 chr5 128115299 128115441 -24421818 + B3A SINE B2 65 203 -13 2 1562 864 174 7 7 chr5 128115452 128115597 -24421662 + B1_Mus2 SINE Alu 3 147 0 2 1562 651 259 109 27 chr5 128116159 128116342 -24420917 + ID_B1 SINE B4 12 209 -15 2 1562 197 100 0 48 chr5 128116342 128116384 -24420875 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 2 1562 427 247 0 22 chr5 128116404 128116495 -24420764 + B1_Mur1 SINE Alu 45 133 -16 2 1562 789 160 0 0 chr5 128116495 128116639 -24420620 + GA-rich Low_complexity Low_complexity 1 144 0 2 1562 669 258 35 56 chr5 128116642 128116839 -24420420 + B3A SINE B2 6 198 0 2 1562 486 71 232 10 chr5 128116857 128116956 -24420303 - B1_Mm SINE Alu -1 146 26 2 1562 445 255 57 0 chr5 128117024 128117130 -24420129 + PB1D9 SINE Alu 1 112 -8 2 1562 604 243 28 17 chr5 128117719 128117895 -24419364 - B3A SINE B2 -16 182 5 2 1562 392 176 40 0 chr5 128118013 128118087 -24419172 - ID_B1 SINE B4 -62 162 86 2 1562 266 307 47 157 chr5 128118471 128118556 -24418703 + MT2B2 LTR ERVL 47 132 -452 2 1562 1129 189 36 9 chr5 128118556 128118775 -24418484 - URR1B DNA MER1_type 0 225 1 2 1562 266 307 47 157 chr5 128118775 128118822 -24418437 + MT2B2 LTR ERVL 133 152 -432 2 1562 636 209 17 9 chr5 128118822 128118938 -24418321 + B1_Mur4 SINE Alu 1 117 -33 2 1562 189 0 0 0 chr5 128118938 128118959 -24418300 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 1562 261 0 0 0 chr5 128119173 128119202 -24418057 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1562 1780 150 75 31 chr5 128119324 128119709 -24417550 - RMER10A LTR ERVL -6 436 35 2 1562 896 282 80 117 chr5 128119732 128120293 -24416966 + RMER13A LTR ERVK 14 604 -23 2 1562 245 111 0 0 chr5 128120397 128120433 -24416826 - RMER10A LTR ERVL -406 36 1 2 1562 886 215 15 35 chr5 128120809 128121007 -24416252 + B3A SINE B2 5 198 0 2 1562 585 169 78 35 chr5 128121177 128121318 -24415941 - B1_Mur3 SINE Alu -2 147 1 2 1562 578 189 31 8 chr5 128121990 128122118 -24415141 + B1F SINE Alu 1 131 -18 2 1562 237 286 18 0 chr5 128122118 128122174 -24415085 + ID4_ SINE ID 7 63 -20 2 1562 1235 54 0 0 chr5 128122263 128122410 -24414849 - B1_Mus1 SINE Alu 0 148 2 2 1562 477 260 41 77 chr5 128122419 128122464 -24414795 - B2_Mm2 SINE B2 -5 190 143 2 1562 306 0 0 0 chr5 128122464 128122498 -24414761 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1562 697 206 14 14 chr5 128122498 128122648 -24414611 - B3 SINE B2 -67 149 2 2 1562 238 244 0 122 chr5 128122883 128122981 -24414278 - MLT1A1 LTR MaLR -5 403 318 2 1562 1279 83 43 27 chr5 128123029 128123214 -24414045 + B2_Mm2 SINE B2 2 189 -6 2 1562 595 271 0 89 chr5 128123291 128123449 -24413810 - RSINE1 SINE B4 -19 146 3 2 1562 974 239 19 5 chr5 128123477 128123683 -24413576 + B3 SINE B2 1 209 -7 2 1562 1715 143 45 48 chr5 128124043 128124249 -24413010 - ORR1A4 LTR MaLR 0 329 116 2 1562 1345 101 11 5 chr5 128124249 128124439 -24412820 - B2_Mm1t SINE B2 -2 191 1 2 1562 1715 143 45 48 chr5 128124439 128124562 -24412697 - ORR1A4 LTR MaLR -214 115 1 2 1562 602 13 13 0 chr5 128124606 128124681 -24412578 + (TTTTG)n Simple_repeat Simple_repeat 2 77 0 2 1562 1012 223 120 38 chr5 128125221 128125591 -24411668 - MTE2a LTR MaLR 0 419 18 2 1562 313 337 20 40 chr5 128125699 128125798 -24411461 + B1_Mm SINE Alu 2 98 -49 2 1562 426 20 0 0 chr5 128125826 128125877 -24411382 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 1562 965 138 7 0 chr5 128125877 128126015 -24411244 - B1_Mus1 SINE Alu -8 140 2 2 1562 301 311 84 9 chr5 128126139 128126246 -24411013 + L1MC4a LINE L1 6565 6679 -1203 2 1562 303 28 0 0 chr5 128126257 128126293 -24410966 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1562 182 37 0 36 chr5 128126365 128126393 -24410866 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2 1562 1087 56 0 84 chr5 128126397 128126552 -24410707 - B1_Mus1 SINE Alu -5 143 2 2 1562 21 36 0 0 chr5 128126555 128126583 -24410676 + AT_rich Low_complexity Low_complexity 1 28 0 2 1562 543 186 26 192 chr5 128126585 128126778 -24410481 - RSINE1 SINE B4 -2 163 3 2 1562 686 200 147 66 chr5 128126907 128127105 -24410154 + B3 SINE B2 3 216 0 2 1562 669 200 40 13 chr5 128127640 128127792 -24409467 - RSINE1 SINE B4 -7 158 3 2 1562 234 0 0 0 chr5 128127836 128127862 -24409397 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1562 996 142 0 0 chr5 128127869 128128017 -24409242 - B1_Mus1 SINE Alu 0 148 1 2 1562 316 82 61 0 chr5 128128020 128128069 -24409190 - PB1D9 SINE Alu -1 119 68 2 1562 549 256 51 0 chr5 128128026 128128163 -24409096 - ID_B1 SINE B4 -7 217 74 2 1562 241 294 0 29 chr5 128128155 128128225 -24409034 - PB1D7 SINE Alu -8 112 45 2 1562 183 80 0 0 chr5 128128334 128128359 -24408900 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1562 799 249 24 43 chr5 128128369 128128579 -24408680 - B3 SINE B2 -10 206 1 2 1562 387 222 67 0 chr5 128128592 128128682 -24408577 - B3 SINE B2 -57 159 64 2 1562 525 175 210 32 chr5 128128762 128128886 -24408373 - B1F2 SINE Alu 0 149 4 2 1562 225 86 0 0 chr5 128128932 128128967 -24408292 + B1_Mus2 SINE Alu 34 68 -79 2 1562 4014 44 0 0 chr5 128129005 128129500 -24407759 + L1_Mus1 LINE L1 6089 6567 0 2 1562 501 17 0 0 chr5 128129771 128129829 -24407430 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1562 378 61 0 0 chr5 128129952 128130001 -24407258 + (TGG)n Simple_repeat Simple_repeat 3 51 0 2 1562 712 221 0 8 chr5 128130012 128130140 -24407119 - RSINE1 SINE B4 -36 129 3 2 1562 350 294 20 68 chr5 128130230 128130264 -24406995 + ID SINE ID 47 73 -151 2 1562 220 287 16 150 chr5 128130264 128130391 -24406868 + PB1D10 SINE Alu 1 110 -7 2 1562 465 264 42 21 chr5 128130398 128130541 -24406718 + RSINE1 SINE B4 3 148 -17 2 1562 300 111 0 0 chr5 128130558 128130612 -24406647 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1562 197 211 0 17 chr5 128130632 128130690 -24406569 + CT-rich Low_complexity Low_complexity 1 57 0 2 1562 295 173 0 24 chr5 128130700 128130783 -24406476 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 1562 191 156 0 43 chr5 128130782 128130829 -24406430 + CT-rich Low_complexity Low_complexity 2 46 0 2 1562 307 265 66 38 chr5 128130830 128130936 -24406323 + ID_B1 SINE B4 65 173 -51 2 1562 400 153 83 35 chr5 128130853 128130954 -24406305 + PB1D7 SINE Alu 9 114 -35 3 1562 712 183 20 40 chr5 128131237 128131385 -24405874 + B1_Mur2 SINE Alu 2 146 -3 3 1562 270 0 0 0 chr5 128131570 128131600 -24405659 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1562 472 261 51 17 chr5 128131604 128131721 -24405538 - ID_B1 SINE B4 -11 213 93 3 1562 1211 54 7 0 chr5 128131755 128131902 -24405357 - B1_Mus1 SINE Alu 0 148 1 3 1562 276 205 39 137 chr5 128132220 128132322 -24404937 + B3 SINE B2 125 216 0 3 1562 522 243 13 60 chr5 128132362 128132511 -24404748 + B3A SINE B2 27 168 -30 3 1562 294 29 0 0 chr5 128132512 128132547 -24404712 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 1562 1363 76 38 0 chr5 128132898 128133082 -24404177 - B2_Mm1t SINE B2 -1 192 2 3 1562 1210 169 29 0 chr5 128133366 128133573 -24403686 - B3 SINE B2 0 216 4 3 1562 2232 137 70 16 chr5 128133825 128134212 -24403047 - MTC LTR MaLR 0 421 14 3 1562 310 196 0 0 chr5 128134230 128134281 -24402978 - MTEa LTR MaLR -2 377 327 3 1562 996 68 0 0 chr5 128134281 128134414 -24402845 + (GGAA)n Simple_repeat Simple_repeat 3 135 0 3 1562 593 153 126 8 chr5 128134424 128134543 -24402716 + B1_Mur4 SINE Alu 15 147 -3 3 1562 228 135 0 0 chr5 128134546 128134583 -24402676 + (CAA)n Simple_repeat Simple_repeat 3 39 0 3 1562 880 277 81 72 chr5 128134590 128134897 -24402362 - MTEa LTR MaLR -69 310 1 3 1562 414 0 0 0 chr5 128134958 128135004 -24402255 + (TATG)n Simple_repeat Simple_repeat 1 46 0 3 1562 1407 89 5 5 chr5 128135193 128135386 -24401873 - B2_Mm1a SINE B2 0 193 1 3 1562 373 280 21 11 chr5 128135460 128135554 -24401705 - RSINE1 SINE B4 -60 105 11 3 1562 180 0 0 0 chr5 128135711 128135731 -24401528 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 1562 1216 70 0 0 chr5 128135732 128135888 -24401371 - B2_Mm2 SINE B2 -39 156 1 3 1562 373 280 21 11 chr5 128135962 128136056 -24401203 - RSINE1 SINE B4 -60 105 11 3 1562 180 0 0 0 chr5 128136211 128136231 -24401028 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 1562 1238 64 0 0 chr5 128136232 128136388 -24400871 - B2_Mm2 SINE B2 -39 156 1 3 1562 912 127 42 0 chr5 128136578 128136720 -24400539 + B1_Mus1 SINE Alu 1 148 0 3 1562 259 25 0 48 chr5 128136755 128136797 -24400462 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 3 1562 745 284 6 12 chr5 128136804 128136975 -24400284 - B3A SINE B2 -26 172 3 3 1562 1438 75 5 0 chr5 128137017 128137203 -24400056 - B2_Mm1a SINE B2 -6 187 1 3 1562 468 212 212 0 chr5 128137706 128137824 -24399435 - B1_Mus1 SINE Alu -5 143 1 3 1562 243 0 0 0 chr5 128137839 128137866 -24399393 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1562 585 276 6 47 chr5 128137935 128138106 -24399153 + RSINE1 SINE B4 2 165 0 3 1562 396 0 0 0 chr5 128138418 128138462 -24398797 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 3 1562 968 232 24 0 chr5 128138467 128138674 -24398585 + B3 SINE B2 1 212 -4 3 1562 22 0 0 0 chr5 128138687 128138709 -24398550 + AT_rich Low_complexity Low_complexity 1 22 0 3 1562 718 235 89 12 chr5 128138713 128138881 -24398378 + B3A SINE B2 2 182 -16 3 1562 463 153 20 0 chr5 128139475 128139573 -24397686 + CT-rich Low_complexity Low_complexity 3 102 0 3 1562 911 128 0 39 chr5 128139575 128139729 -24397530 - B1_Mur1 SINE Alu 0 149 2 3 1562 941 200 12 6 chr5 128139757 128139918 -24397341 + B3 SINE B2 1 162 -54 3 1562 999 65 49 28 chr5 128139965 128140108 -24397151 - B1_Mus2 SINE Alu -1 146 1 3 1562 450 0 0 0 chr5 128140506 128140556 -24396703 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1562 294 244 109 80 chr5 128140747 128140885 -24396374 + ZP3AR Satellite Satellite 45 186 -26 3 1562 225 0 0 0 chr5 128141103 128141128 -24396131 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1562 342 280 101 11 chr5 128141418 128141606 -24395653 + ID_B1 SINE B4 2 206 -18 3 1562 1110 82 0 27 chr5 128141632 128141782 -24395477 - B1_Mus2 SINE Alu 0 147 2 3 1562 464 276 29 35 chr5 128142144 128142315 -24394944 - PB1D10 SINE Alu -1 310 1 3 1562 213 39 0 0 chr5 128142698 128142724 -24394535 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1562 355 255 36 9 chr5 128143072 128143183 -24394076 + GA-rich Low_complexity Low_complexity 2 115 0 3 1562 270 311 11 22 chr5 128143285 128143377 -24393882 + CT-rich Low_complexity Low_complexity 3 93 0 3 1562 32 26 0 0 chr5 128143756 128143795 -24393464 + AT_rich Low_complexity Low_complexity 1 39 0 3 1562 257 338 0 0 chr5 128143861 128143929 -24393330 - RSINE1 SINE B4 -4 161 94 3 1562 316 221 244 0 chr5 128144166 128144252 -24393007 + ID_B1 SINE B4 100 206 -18 3 1562 28 29 0 0 chr5 128144666 128144701 -24392558 + AT_rich Low_complexity Low_complexity 1 35 0 3 1562 1066 64 35 7 chr5 128145329 128145471 -24391788 + B1_Mus2 SINE Alu 1 146 -1 3 1562 293 57 0 70 chr5 128145478 128145535 -24391724 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 3 1562 752 216 141 141 chr5 128145926 128146105 -24391154 - B4 SINE B4 0 292 113 3 1562 1198 41 7 0 chr5 128146105 128146250 -24391009 - B1_Mus1 SINE Alu -2 146 1 3 1562 752 216 141 141 chr5 128146250 128146361 -24390898 - B4 SINE B4 -180 112 2 3 1562 192 40 0 0 chr5 128146936 128146961 -24390298 + (C)n Simple_repeat Simple_repeat 1 25 0 3 1562 1167 132 147 0 chr5 128147311 128147508 -24389751 - URR1A DNA MER1_type 0 226 1 3 1562 2542 68 3 33 chr5 128147835 128148171 -24389088 + ORR1A2 LTR MaLR 1 326 -1 3 1562 524 232 123 38 chr5 128148261 128148414 -24388845 - RMER20B LTR ERVK -355 161 1 3 1562 1247 106 50 0 chr5 128148438 128148618 -24388641 - B2_Mm2 SINE B2 -6 189 1 3 1562 272 214 767 8 chr5 128148648 128148771 -24388488 - B3 SINE B2 0 216 1 3 1562 1227 234 48 32 chr5 128149200 128149514 -24387745 - MTE2a LTR MaLR -9 370 52 3 1562 480 128 0 0 chr5 128149606 128149684 -24387575 + (TC)n Simple_repeat Simple_repeat 2 79 0 3 1562 424 292 115 0 chr5 128149745 128149875 -24387384 - ID_B1 SINE B4 0 224 80 3 1562 931 128 0 29 chr5 128150043 128150180 -24387079 - B1_Mur4 SINE Alu -17 133 1 3 1562 444 331 8 16 chr5 128150313 128150439 -24386820 + B1F SINE Alu 2 126 -23 3 1562 2474 175 87 24 chr5 128150609 128151106 -24386153 + RLTR11A LTR ERVK 1 528 0 3 1562 719 186 174 11 chr5 128151350 128151540 -24385719 - URR1B DNA MER1_type 0 225 5 3 1562 243 225 183 43 chr5 128151861 128151954 -24385305 + Charlie9 DNA MER1_type 45 150 -2607 3 1562 730 263 38 14 chr5 128151988 128152200 -24385059 - ID_B1 SINE B4 -7 217 1 3 1562 471 35 0 0 chr5 128152504 128152561 -24384698 + (GGGA)n Simple_repeat Simple_repeat 1 57 0 3 1562 23 33 0 0 chr5 128152566 128152596 -24384663 + AT_rich Low_complexity Low_complexity 1 30 0 3 1562 388 134 0 12 chr5 128152612 128152726 -24384533 - B2_Mm2 SINE B2 0 195 47 3 1562 1226 103 29 0 chr5 128152792 128152966 -24384293 - B2_Mm2 SINE B2 -14 181 3 3 1562 418 225 184 16 chr5 128152987 128153172 -24384087 - B3 SINE B2 0 216 1 3 1562 568 292 15 15 chr5 128154448 128154643 -24382616 - B3A SINE B2 -3 195 1 3 1562 474 149 6 38 chr5 128154678 128154838 -24382421 + CT-rich Low_complexity Low_complexity 1 155 0 3 1562 535 313 59 50 chr5 128154838 128154991 -24382268 - ID_B1 SINE B4 0 224 79 3 1562 344 40 20 0 chr5 128154991 128155041 -24382218 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1562 535 313 59 50 chr5 128155041 128155109 -24382150 - ID SINE ID -146 78 1 3 1562 2298 92 35 0 chr5 128155212 128155528 -24381731 - ORR1A2 LTR MaLR 0 327 1 3 1562 276 53 0 0 chr5 128156121 128156159 -24381100 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 1562 279 143 0 0 chr5 128156248 128156290 -24380969 - B1_Mm SINE Alu 0 147 106 3 1562 363 262 36 100 chr5 128156303 128156398 -24380861 - L1MEg LINE L1 -4132 1952 1856 3 1562 1182 88 0 0 chr5 128156398 128156545 -24380714 - B1_Mus2 SINE Alu 0 147 1 3 1562 333 68 0 0 chr5 128156550 128156594 -24380665 + (TTA)n Simple_repeat Simple_repeat 2 45 0 3 1562 869 172 172 0 chr5 128156594 128156763 -24380496 - B3 SINE B2 -16 200 3 3 1562 363 262 36 100 chr5 128156763 128156800 -24380459 - L1MEg LINE L1 -4232 1852 1823 3 1562 842 183 135 17 chr5 128156802 128156980 -24380279 + ID_B1 SINE B4 14 212 -12 3 1562 218 217 0 0 chr5 128156993 128157039 -24380220 + A-rich Low_complexity Low_complexity 1 46 0 3 1562 193 77 0 71 chr5 128157310 128157352 -24379907 + (CCCCCA)n Simple_repeat Simple_repeat 4 42 0 3 1562 342 243 14 0 chr5 128157738 128157812 -24379447 - PB1D10 SINE Alu -40 77 3 3 1562 926 218 20 15 chr5 128158026 128158222 -24379037 - B3A SINE B2 0 198 2 3 1562 201 175 0 0 chr5 128158415 128158455 -24378804 + CT-rich Low_complexity Low_complexity 1 40 0 3 1562 1142 156 5 30 chr5 128158547 128158586 -24378673 - B2_Mm2 SINE B2 0 195 161 3 1562 276 30 0 0 chr5 128158586 128158619 -24378640 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 3 1562 1142 156 5 30 chr5 128158619 128158778 -24378481 - B2_Mm2 SINE B2 -35 160 2 3 1562 189 147 0 0 chr5 128158784 128158818 -24378441 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1562 1223 54 0 0 chr5 128158818 128158965 -24378294 - B1_Mm SINE Alu 0 147 1 3 1562 297 0 0 0 chr5 128158985 128159018 -24378241 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1562 443 324 21 14 chr5 128159020 128159164 -24378095 - B3A SINE B2 -50 148 4 3 1562 217 339 36 78 chr5 128159258 128159296 -24377963 - B2_Mm2 SINE B2 -2 193 10 3 1562 585 264 71 65 chr5 128159296 128159450 -24377809 - RSINE1 SINE B4 0 165 11 3 1562 1042 219 15 0 chr5 128159518 128159723 -24377536 + B3 SINE B2 1 208 -8 4 1562 1217 62 0 0 chr5 128159742 128159888 -24377371 + B1_Mus1 SINE Alu 1 146 -2 4 1562 207 0 0 0 chr5 128159888 128159911 -24377348 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4 1562 22 0 0 0 chr5 128159911 128159933 -24377326 + AT_rich Low_complexity Low_complexity 1 22 0 4 1562 264 262 0 62 chr5 128159962 128160027 -24377232 + ID4 SINE ID 14 74 -9 4 1562 198 0 0 0 chr5 128160057 128160079 -24377180 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1562 680 144 6 11 chr5 128160079 128160262 -24376997 + GA-rich Low_complexity Low_complexity 1 181 0 4 1562 510 17 0 0 chr5 128160572 128160631 -24376628 + (CA)n Simple_repeat Simple_repeat 1 59 0 4 1562 617 331 48 52 chr5 128160852 128161120 -24376139 + MLT1A0 LTR MaLR 15 281 -84 4 1562 330 229 298 50 chr5 128161338 128161499 -24375760 - RMER15 LTR ERVL -96 479 279 4 1562 22 0 0 0 chr5 128161678 128161700 -24375559 + GC_rich Low_complexity Low_complexity 1 22 0 4 1562 649 226 0 0 chr5 128161874 128161989 -24375270 + RSINE1 SINE B4 2 116 -49 4 1562 862 272 130 62 chr5 128162122 128162605 -24374654 - MTC-int LTR MaLR -103 1155 640 4 1562 241 238 0 24 chr5 128162605 128162687 -24374572 + CT-rich Low_complexity Low_complexity 1 80 0 4 1562 1212 179 0 41 chr5 128162785 128163006 -24374253 - URR1B DNA MER1_type -13 212 1 4 1562 584 239 139 60 chr5 128163015 128163282 -24373977 - MTC-int LTR MaLR -567 691 404 4 1562 554 244 54 116 chr5 128163284 128163543 -24373716 - MTC-int LTR MaLR -958 300 58 4 1562 1415 164 109 11 chr5 128163661 128163945 -24373314 - MTD LTR MaLR -34 385 74 4 1562 23 0 0 0 chr5 128164728 128164751 -24372508 + AT_rich Low_complexity Low_complexity 1 23 0 4 1562 354 227 13 0 chr5 128164990 128165065 -24372194 - B3 SINE B2 -6 210 135 4 1562 267 145 49 98 chr5 128165217 128165278 -24371981 + MIR SINE MIR 102 159 -103 4 1562 521 271 0 99 chr5 128166137 128166309 -24370950 - RSINE1 SINE B4 -8 157 3 4 1562 290 304 49 102 chr5 128166759 128166964 -24370295 - B4 SINE B4 0 292 99 4 1562 619 217 58 82 chr5 128167017 128167047 -24370212 - B3 SINE B2 -14 202 176 4 1562 453 81 0 0 chr5 128167047 128167109 -24370150 + (TATG)n Simple_repeat Simple_repeat 3 64 0 4 1562 619 217 58 82 chr5 128167109 128167284 -24369975 - B3 SINE B2 -41 175 2 4 1562 589 168 0 40 chr5 128167286 128167385 -24369874 - B4 SINE B4 -197 95 1 4 1562 268 325 165 6 chr5 128167434 128167640 -24369619 + MIRb SINE MIR 23 258 -4 4 1562 195 129 0 0 chr5 128168232 128168263 -24368996 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 4 1562 459 290 51 44 chr5 128168263 128168400 -24368859 - B1_Mur2 SINE Alu 0 149 12 4 1562 2710 64 8 6 chr5 128168400 128168761 -24368498 + L1_Mus3 LINE L1 6276 6637 -1 4 1562 399 162 44 0 chr5 128168851 128168919 -24368340 - RSINE1 SINE B4 -83 82 12 4 1562 411 198 83 0 chr5 128169137 128169233 -24368026 - ID_B1 SINE B4 -37 187 84 4 1562 514 353 27 21 chr5 128169766 128169954 -24367305 - ID_B1 SINE B4 -13 211 23 4 1562 369 0 0 0 chr5 128169989 128170030 -24367229 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1562 531 252 22 37 chr5 128170031 128170167 -24367092 - RSINE1 SINE B4 -18 147 14 4 1562 1104 170 19 33 chr5 128170726 128170939 -24366320 + B3 SINE B2 1 210 -6 4 1562 1257 41 0 0 chr5 128171137 128171284 -24365975 + B1_Mus2 SINE Alu 1 147 0 4 1562 266 267 50 79 chr5 128171577 128171767 -24365492 - B3A SINE B2 -13 203 15 4 1562 754 239 100 75 chr5 128172432 128172712 -24364547 + B4 SINE B4 1 287 -5 4 1562 21 0 0 0 chr5 128172713 128172734 -24364525 + GC_rich Low_complexity Low_complexity 1 21 0 4 1562 677 189 22 29 chr5 128173522 128173658 -24363601 + B1_Mus2 SINE Alu 1 135 -12 4 1562 24 53 0 0 chr5 128174034 128174072 -24363187 + AT_rich Low_complexity Low_complexity 1 38 0 4 1562 647 235 11 63 chr5 128174087 128174278 -24362981 - B3A SINE B2 -17 181 1 4 1562 962 225 4 122 chr5 128174281 128174544 -24362715 - B4 SINE B4 -60 232 1 4 1562 531 237 58 88 chr5 128174914 128175085 -24362174 + ID_B1 SINE B4 59 224 0 4 1562 225 0 0 0 chr5 128175093 128175118 -24362141 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4 1562 372 309 131 50 chr5 128176118 128176277 -24360982 + ID_B1 SINE B4 4 190 -34 4 1562 1444 192 130 6 chr5 128176551 128176881 -24360378 - MTD LTR MaLR -8 411 41 4 1562 259 299 17 17 chr5 128176950 128177127 -24360132 + (TA)n Simple_repeat Simple_repeat 2 178 0 4 1562 432 143 0 0 chr5 128177583 128177681 -24359578 + (TC)n Simple_repeat Simple_repeat 1 98 0 4 1562 966 126 0 0 chr5 128177685 128177820 -24359439 - B1_Mus1 SINE Alu -12 136 2 4 1562 270 0 0 0 chr5 128177837 128177867 -24359392 + (CA)n Simple_repeat Simple_repeat 2 31 0 4 1562 646 258 83 52 chr5 128177868 128178060 -24359199 - ID_B1 SINE B4 -20 204 7 4 1562 625 266 8 8 chr5 128178375 128178504 -24358755 + RSINE1 SINE B4 3 131 -34 4 1562 271 159 43 0 chr5 128178827 128178896 -24358363 + CT-rich Low_complexity Low_complexity 4 75 0 4 1562 1045 259 3 42 chr5 128180284 128180375 -24356884 + Lx8 LINE L1 7012 7098 -375 4 1562 1402 219 52 44 chr5 128180375 128180738 -24356521 - ORR1D2 LTR MaLR -4 366 1 4 1562 1045 259 3 42 chr5 128180738 128180932 -24356327 + Lx8 LINE L1 7099 7286 -187 4 1562 279 54 0 0 chr5 128180960 128180997 -24356262 + (T)n Simple_repeat Simple_repeat 1 37 0 4 1562 519 17 0 0 chr5 128181116 128181176 -24356083 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 4 1562 230 254 103 27 chr5 128181280 128181426 -24355833 + ORR1B1-int LTR MaLR 598 754 -755 4 1562 876 42 83 0 chr5 128181337 128181457 -24355802 + B1_Mm SINE Alu 9 138 -9 4 1562 513 0 0 0 chr5 128181457 128181514 -24355745 + (CAAAC)n Simple_repeat Simple_repeat 2 58 0 4 1562 369 0 0 0 chr5 128181810 128181851 -24355408 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1562 698 109 0 9 chr5 128182998 128183109 -24354150 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 4 1562 234 0 0 0 chr5 128183252 128183278 -24353981 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 4 1562 438 20 0 0 chr5 128183801 128183852 -24353407 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1562 877 250 31 28 chr5 128183857 128184145 -24353114 - B4 SINE B4 -3 289 1 4 1562 2304 135 27 144 chr5 128184527 128185013 -24352246 + RLTR23 LTR ERV1 2 430 0 4 1562 215 315 78 35 chr5 128185030 128185145 -24352114 - MIRc SINE MIR -146 122 3 4 1562 37 23 0 0 chr5 128185334 128185378 -24351881 + AT_rich Low_complexity Low_complexity 1 44 0 4 1562 242 146 20 59 chr5 128185453 128185504 -24351755 + G-rich Low_complexity Low_complexity 1 49 0 4 1562 243 262 65 87 chr5 128185795 128185887 -24351372 - MTD LTR MaLR -96 323 234 4 1562 1137 102 0 0 chr5 128185888 128186035 -24351224 + B1_Mus2 SINE Alu 1 147 0 4 1562 315 0 0 0 chr5 128186035 128186070 -24351189 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1562 713 192 132 144 chr5 128186070 128186320 -24350939 - MTD LTR MaLR -172 247 1 4 1562 443 257 142 6 chr5 128186405 128186581 -24350678 - Lx8 LINE L1 -426 7047 6848 4 1562 462 79 0 0 chr5 128186791 128186854 -24350405 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1562 228 122 0 0 chr5 128186923 128186964 -24350295 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1562 1086 76 14 0 chr5 128186964 128187108 -24350151 - B1_Mus2 SINE Alu 0 147 2 4 195 539 144 10 0 chr5 128188342 128188439 -24348820 + GA-rich Low_complexity Low_complexity 1 98 0 4 1563 2562 93 2 55 chr5 128189384 128189804 -24347455 + RMER10B LTR ERVL 1 398 0 4 1563 207 0 0 0 chr5 128189980 128190003 -24347256 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1563 1085 166 71 5 chr5 128190667 128190879 -24346380 - URR1A DNA MER1_type 0 226 1 4 1563 450 188 12 24 chr5 128191152 128191234 -24346025 - B1_Mur1 SINE Alu -18 131 51 4 1563 317 268 19 17 chr5 128191318 128191438 -24345821 - RSINE1 SINE B4 -170 122 2 4 1563 525 332 88 40 chr5 128191737 128192066 -24345193 - ORR1E LTR MaLR -5 354 10 4 1563 315 0 0 0 chr5 128192072 128192107 -24345152 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1563 831 235 10 48 chr5 128192194 128192400 -24344859 - B3A SINE B2 0 198 1 4 1563 310 31 0 72 chr5 128192505 128192574 -24344685 + (CAAAA)n Simple_repeat Simple_repeat 2 65 0 4 1563 410 278 10 10 chr5 128192579 128192677 -24344582 + B4A SINE B4 1 98 -194 4 1563 626 184 172 35 chr5 128192680 128192849 -24344410 - RMER15 LTR ERVL 0 575 384 4 1563 514 218 48 16 chr5 128192924 128193050 -24344209 - RMER15 LTR ERVL -444 131 2 4 1563 230 185 37 0 chr5 128193174 128193228 -24344031 + B2_Mm2 SINE B2 4 59 -136 4 1563 689 70 10 0 chr5 128193229 128193329 -24343930 + (CA)n Simple_repeat Simple_repeat 1 101 0 4 1563 351 287 95 43 chr5 128193329 128193540 -24343719 - MLT1J LTR MaLR -34 478 257 4 1563 260 272 158 32 chr5 128193596 128193691 -24343568 - MLT1J LTR MaLR -365 147 41 4 1563 873 167 139 5 chr5 128194215 128194402 -24342857 + B3 SINE B2 5 216 0 4 1563 607 259 28 62 chr5 128194430 128194574 -24342685 + B3A SINE B2 1 139 -59 4 1563 273 29 0 0 chr5 128194574 128194608 -24342651 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 4 1563 198 0 0 0 chr5 128194608 128194630 -24342629 + (CA)n Simple_repeat Simple_repeat 1 22 0 4 1563 755 262 10 40 chr5 128194955 128195154 -24342105 - B3A SINE B2 -1 197 5 4 1563 330 26 0 0 chr5 128195373 128195412 -24341847 + (GA)n Simple_repeat Simple_repeat 1 39 0 4 1563 891 245 10 0 chr5 128195800 128195996 -24341263 + B3A SINE B2 1 198 0 4 1563 513 206 197 7 chr5 128196149 128196291 -24340968 - ORR1D1 LTR MaLR -7 367 199 4 1563 402 205 138 80 chr5 128196293 128196305 -24340954 + B1_Mur2 SINE Alu 2 13 -136 4 1563 333 0 0 0 chr5 128196305 128196342 -24340917 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1563 402 205 138 80 chr5 128196342 128196467 -24340792 + B1_Mur2 SINE Alu 14 147 -2 4 1563 622 279 42 16 chr5 128196605 128196794 -24340465 - RMER30 DNA MER1_type -1 201 8 5 1563 767 40 10 0 chr5 128197099 128197198 -24340061 + (TCC)n Simple_repeat Simple_repeat 3 102 0 5 1563 242 296 0 27 chr5 128197339 128197412 -24339847 + MLT1J LTR MaLR 243 313 -199 5 1563 1645 235 55 71 chr5 128197906 128197945 -24339314 - RLTR20B3 LTR ERVK -56 521 483 5 1563 378 0 0 0 chr5 128197945 128197987 -24339272 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1563 1645 235 55 71 chr5 128197987 128198456 -24338803 - RLTR20B3 LTR ERVK -95 482 23 5 1563 314 280 188 41 chr5 128198796 128198993 -24338266 - MLT1C LTR MaLR -198 269 44 5 1563 262 320 10 10 chr5 128199746 128199844 -24337415 + L1M5 LINE L1 5594 5691 -433 5 1563 425 213 6 0 chr5 128200017 128200191 -24337068 + (TG)n Simple_repeat Simple_repeat 1 175 0 5 1563 262 298 26 103 chr5 128200324 128200440 -24336819 + B4A SINE B4 186 292 0 5 1563 369 312 9 9 chr5 128200550 128200660 -24336599 + PB1D10 SINE Alu 1 110 -7 5 1563 842 182 0 13 chr5 128200668 128200818 -24336441 + B1_Mur2 SINE Alu 1 148 -1 5 1563 236 159 22 79 chr5 128200837 128200926 -24336333 + A-rich Low_complexity Low_complexity 1 84 0 5 1563 214 212 14 108 chr5 128201119 128201193 -24336066 + ID SINE ID 1 67 -157 5 1563 806 183 103 13 chr5 128201496 128201651 -24335608 + Lx7 LINE L1 7124 7292 -404 5 1563 1078 179 70 45 chr5 128201827 128202086 -24335173 - Lx4A LINE L1 -1 7057 6757 5 1563 1427 66 0 5 chr5 128202087 128202271 -24334988 - B2_Mm2 SINE B2 -7 188 6 5 1563 615 207 90 28 chr5 128202317 128202461 -24334798 + ID_B1 SINE B4 63 215 -9 5 1563 2263 50 30 20 chr5 128202766 128203070 -24334189 + IAPLTR2b LTR ERVK 1 307 -20 5 1563 1364 95 11 0 chr5 128203773 128203963 -24333296 + B2_Mm1a SINE B2 1 192 -1 5 1563 520 161 149 74 chr5 128204097 128204140 -24333119 - ORR1C2 LTR MaLR -8 376 342 5 1563 1368 85 21 0 chr5 128204140 128204329 -24332930 - B2_Mm1t SINE B2 0 193 1 5 1563 520 161 149 74 chr5 128204329 128204406 -24332853 - ORR1C2 LTR MaLR -43 341 247 5 1563 330 26 0 0 chr5 128204406 128204445 -24332814 + (CAGG)n Simple_repeat Simple_repeat 4 42 0 5 1563 323 266 93 86 chr5 128204445 128204463 -24332796 - ORR1C2 LTR MaLR -130 229 214 5 1563 533 298 74 143 chr5 128204463 128204882 -24332377 + Lx8 LINE L1 7052 7441 -32 5 1563 3407 129 53 78 chr5 128204882 128205481 -24331778 + RMER4B LTR ERVK 1 584 -1 5 1563 21 36 0 0 chr5 128205530 128205558 -24331701 + AT_rich Low_complexity Low_complexity 1 28 0 5 1563 1646 232 21 9 chr5 128206316 128206651 -24330608 + MTEa LTR MaLR 41 379 0 5 1563 455 299 45 35 chr5 128206680 128206878 -24330381 + MLT1J LTR MaLR 117 316 -196 5 1563 202 323 0 0 chr5 128206898 128206960 -24330299 + (TTA)n Simple_repeat Simple_repeat 2 63 0 5 1563 234 0 0 0 chr5 128206960 128206986 -24330273 + (TGG)n Simple_repeat Simple_repeat 3 28 0 5 1563 694 182 56 0 chr5 128206988 128207114 -24330145 - B1_Mur4 SINE Alu -8 142 10 5 1563 727 260 170 43 chr5 128208958 128209110 -24328149 - MTD LTR MaLR -25 394 211 5 1563 1371 97 16 0 chr5 128209110 128209295 -24327964 - B2_Mm2 SINE B2 -6 189 2 5 1563 727 260 170 43 chr5 128209295 128209419 -24327840 - MTD LTR MaLR -209 210 83 5 1563 236 273 62 93 chr5 128209403 128209500 -24327759 - MLT1A1 LTR MaLR -152 256 163 5 1563 3360 43 8 0 chr5 128209782 128210179 -24327080 + MTB LTR MaLR 1 400 0 5 1563 1194 239 114 44 chr5 128210180 128210478 -24326781 - MTEa LTR MaLR -18 361 43 5 1563 553 204 88 0 chr5 128211199 128211312 -24325947 + ID_B1 SINE B4 94 216 -8 5 1563 278 220 0 33 chr5 128211332 128211393 -24325866 + PB1D7 SINE Alu 1 59 -61 5 1563 679 242 79 0 chr5 128211409 128211573 -24325686 + B3 SINE B2 3 179 -37 5 1563 536 261 190 0 chr5 128211573 128211715 -24325544 + B3 SINE B2 1 169 -47 5 1563 209 108 27 0 chr5 128212039 128212076 -24325183 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 5 1563 927 104 97 0 chr5 128212076 128212210 -24325049 - B1_Mus1 SINE Alu 0 148 2 5 1563 21 57 0 0 chr5 128212221 128212256 -24325003 + AT_rich Low_complexity Low_complexity 1 35 0 5 1563 754 165 54 81 chr5 128212473 128212658 -24324601 + RLTR20B3 LTR ERVK 21 200 -377 5 1563 207 0 0 0 chr5 128212658 128212681 -24324578 + (GGA)n Simple_repeat Simple_repeat 1 23 0 5 1563 784 190 34 171 chr5 128212681 128212943 -24324316 + RLTR20B3 LTR ERVK 308 528 0 5 1563 268 311 194 51 chr5 128213175 128213412 -24323847 + MLT1F LTR MaLR 150 420 -128 5 1563 1115 176 17 71 chr5 128213743 128213981 -24323278 - URR1B DNA MER1_type 0 225 1 5 1563 24889 141 22 37 chr5 128214218 128220342 -24316917 + Lx LINE L1 538 6551 -103 5 1563 180 0 0 0 chr5 128220342 128220362 -24316897 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 5 1563 7062 131 15 5 chr5 128220362 128220450 -24316809 + Lx LINE L1 6552 6652 -2 5 1563 267 333 26 13 chr5 128220455 128220610 -24316649 + GA-rich Low_complexity Low_complexity 2 158 0 5 1563 1237 48 0 0 chr5 128220643 128220790 -24316469 - B1_Mus1 SINE Alu -1 147 1 5 1563 875 217 9 90 chr5 128220820 128221043 -24316216 - B3 SINE B2 -7 209 5 5 1563 468 0 0 0 chr5 128221285 128221337 -24315922 + (CAG)n Simple_repeat Simple_repeat 3 54 0 5 1563 659 328 50 29 chr5 128221640 128222061 -24315198 - L1MC LINE L1 -2083 5799 5370 5 1563 624 62 0 0 chr5 128222066 128222147 -24315112 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 5 1563 560 151 9 0 chr5 128222147 128222246 -24315013 + CT-rich Low_complexity Low_complexity 8 107 0 5 1563 1455 39 0 0 chr5 128222246 128222424 -24314835 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 5 1563 289 367 18 0 chr5 128222697 128222806 -24314453 - MER77 LTR ERVL -11 596 486 5 1563 2867 16 5 131 chr5 128222817 128223237 -24314022 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1563 51927 29 23 15 chr5 128223237 128229660 -24307599 + IAPEz-int LTR ERVK 8 6478 -3 5 1563 1138 67 70 43 chr5 128230088 128230275 -24306984 - B2_Mm2 SINE B2 -1 194 3 5 1563 389 294 0 84 chr5 128230319 128230438 -24306821 + PB1D10 SINE Alu 6 114 -3 5 1563 209 352 86 0 chr5 128230836 128230941 -24306318 + L2 LINE L2 1989 2102 -1317 5 1563 236 191 0 21 chr5 128230956 128231004 -24306255 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1563 288 233 40 14 chr5 128231009 128231083 -24306176 - B4A SINE B4 0 292 217 5 1563 462 278 0 9 chr5 128231105 128231214 -24306045 - B4A SINE B4 -68 224 117 5 1563 403 221 89 30 chr5 128231214 128231240 -24306019 - B1F2 SINE Alu -2 147 5 5 1563 844 207 49 25 chr5 128232693 128232896 -24304363 - B3 SINE B2 -5 211 4 5 1563 422 360 0 0 chr5 128233132 128233310 -24303949 + (TG)n Simple_repeat Simple_repeat 1 178 0 5 1563 1023 241 60 41 chr5 128233347 128233615 -24303644 - B4 SINE B4 -18 274 2 5 1563 309 136 0 0 chr5 128233629 128233695 -24303564 + (TC)n Simple_repeat Simple_repeat 1 66 0 5 1563 471 60 0 0 chr5 128233695 128233762 -24303497 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 5 1563 263 245 170 38 chr5 128233826 128233932 -24303327 - Tigger7 DNA MER2_type -40 2451 2332 5 1563 1238 155 0 19 chr5 128234020 128234237 -24303022 + B3 SINE B2 1 195 0 5 1563 448 256 168 84 chr5 128234240 128234419 -24302840 + B4 SINE B4 79 272 -20 5 1563 471 130 0 0 chr5 128234549 128234626 -24302633 + (TATG)n Simple_repeat Simple_repeat 2 78 0 5 1563 277 304 40 88 chr5 128234709 128234857 -24302402 - RMER15 LTR ERVL -1 574 434 5 1563 1805 171 56 92 chr5 128234881 128235273 -24301986 - ORR1C1 LTR MaLR 0 378 1 5 1563 288 0 0 0 chr5 128235606 128235638 -24301621 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1563 210 91 0 0 chr5 128235738 128235771 -24301488 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1563 226 277 31 0 chr5 128236864 128236929 -24300330 + B3 SINE B2 145 211 -5 5 1563 267 103 0 0 chr5 128236937 128236976 -24300283 + (A)n Simple_repeat Simple_repeat 1 39 0 5 1563 1021 60 90 0 chr5 128236996 128237129 -24300130 + B1_Mus2 SINE Alu 3 147 0 5 1563 361 217 95 12 chr5 128237437 128237521 -24299738 - ZP3AR Satellite Satellite -89 123 33 5 1563 769 261 27 27 chr5 128239775 128239960 -24297299 - B4 SINE B4 -103 189 5 5 1563 1463 165 133 125 chr5 128239960 128240024 -24297235 - ORR1C1 LTR MaLR 0 378 277 5 1563 252 0 0 0 chr5 128240024 128240052 -24297207 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 5 1563 1463 165 133 125 chr5 128240052 128240362 -24296897 - ORR1C1 LTR MaLR -102 276 2 5 1563 1826 226 202 5 chr5 128240423 128240979 -24296280 + Lx8 LINE L1 6692 7357 -116 5 1563 198 71 0 0 chr5 128241031 128241059 -24296200 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1563 452 203 333 0 chr5 128241219 128241342 -24295917 - B3 SINE B2 -45 171 8 5 1563 28 0 0 0 chr5 128241357 128241385 -24295874 + AT_rich Low_complexity Low_complexity 1 28 0 5 1563 296 330 85 60 chr5 128241987 128242268 -24294991 + Lx8 LINE L1 5860 6147 -1326 5 1563 460 244 0 11 chr5 128242511 128242602 -24294657 + B4 SINE B4 6 95 -197 5 1563 342 0 0 0 chr5 128242602 128242640 -24294619 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1563 450 0 0 0 chr5 128242640 128242689 -24294570 + (CA)n Simple_repeat Simple_repeat 1 50 0 5 1563 271 335 41 76 chr5 128243018 128243189 -24294070 - MIR SINE MIR -93 169 5 5 1563 2766 124 128 2 chr5 128243210 128243678 -24293581 + RLTR11A LTR ERVK 2 528 0 5 1563 590 230 49 49 chr5 128244160 128244302 -24292957 + B3A SINE B2 15 156 -42 5 1563 2085 156 31 54 chr5 128244343 128244730 -24292529 + ORR1C1 LTR MaLR 1 378 0 5 1563 1815 223 30 0 chr5 128244788 128245156 -24292103 + MTEa LTR MaLR 1 379 0 5 1563 1461 212 96 28 chr5 128245225 128245588 -24291671 - MTD LTR MaLR -14 405 18 5 1563 252 259 0 49 chr5 128245674 128245728 -24291531 - RSINE1 SINE B4 -106 59 7 5 1563 1000 246 14 0 chr5 128245728 128245939 -24291320 - B3 SINE B2 -2 214 1 5 1563 279 113 0 0 chr5 128245955 128246008 -24291251 + (T)n Simple_repeat Simple_repeat 1 53 0 6 1563 216 0 0 0 chr5 128246100 128246124 -24291135 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1563 259 340 122 20 chr5 128246839 128246986 -24290273 - MIR SINE MIR -98 164 3 6 1563 485 378 126 20 chr5 128247602 128248040 -24289219 - MLT1H LTR MaLR 0 549 66 6 1563 854 180 179 60 chr5 128248269 128248470 -24288789 - URR1A DNA MER1_type -1 225 1 6 1563 234 254 0 0 chr5 128249328 128249395 -24287864 + CT-rich Low_complexity Low_complexity 3 69 0 6 1563 516 255 9 0 chr5 128249454 128249560 -24287699 - PB1D9 SINE Alu -11 109 3 6 1563 567 0 0 0 chr5 128249582 128249645 -24287614 + (TTC)n Simple_repeat Simple_repeat 1 63 0 6 1563 1011 161 0 0 chr5 128249645 128249825 -24287434 + CT-rich Low_complexity Low_complexity 1 180 0 6 1563 424 253 0 0 chr5 128249838 128249921 -24287338 - B1F SINE Alu -51 98 16 6 1563 247 253 0 132 chr5 128249850 128249941 -24287318 - MT2B2 LTR ERVL -343 241 163 6 1563 302 336 28 28 chr5 128250201 128250308 -24286951 - PB1D10 SINE Alu -38 111 5 6 1563 23 0 0 0 chr5 128250502 128250525 -24286734 + AT_rich Low_complexity Low_complexity 1 23 0 6 1563 299 279 132 31 chr5 128250779 128250938 -24286321 + MLT1J LTR MaLR 5 179 -333 6 1563 426 268 24 24 chr5 128251045 128251171 -24286088 + MER20 DNA MER1_type 86 211 -8 6 1563 1071 226 30 57 chr5 128252009 128252305 -24284954 - B4A SINE B4 -4 288 1 6 1563 616 261 70 0 chr5 128252571 128252713 -24284546 + RSINE1 SINE B4 3 154 -11 6 1563 219 250 110 143 chr5 128252577 128252759 -24284500 + B2_Mm1a SINE B2 8 183 -10 6 1563 907 101 27 0 chr5 128253238 128253386 -24283873 + (TATATG)n Simple_repeat Simple_repeat 3 154 0 6 1563 982 358 32 36 chr5 128253490 128253959 -24283300 + MLT1F LTR MaLR 2 468 -80 6 1563 701 93 9 0 chr5 128254132 128254239 -24283020 + (GA)n Simple_repeat Simple_repeat 2 109 0 6 1563 3465 117 58 0 chr5 128254262 128254758 -24282501 + Lx4A LINE L1 6533 7057 -1 6 1563 314 195 0 13 chr5 128255635 128255713 -24281546 + GA-rich Low_complexity Low_complexity 3 79 0 6 1563 306 271 101 60 chr5 128255733 128255882 -24281377 + HAL1-3A_ME LINE L1 2284 2438 -420 6 1563 259 191 0 29 chr5 128255885 128255955 -24281304 + GA-rich Low_complexity Low_complexity 2 69 0 6 1563 503 234 97 61 chr5 128257421 128257535 -24279724 + B3A SINE B2 39 156 -42 6 1563 841 157 0 45 chr5 128257630 128257784 -24279475 - B1_Mur3 SINE Alu 0 149 3 6 1563 237 226 74 19 chr5 128257855 128257909 -24279350 + MLT1C LTR MaLR 6 62 -405 6 1563 198 0 0 0 chr5 128257920 128257942 -24279317 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1563 2010 127 14 64 chr5 128257956 128258302 -24278957 + ORR1A4 LTR MaLR 1 329 0 6 1563 293 301 116 30 chr5 128259026 128259259 -24278000 + MLT1C LTR MaLR 5 257 -210 6 1563 347 331 159 20 chr5 128259326 128259477 -24277782 + MLT1C LTR MaLR 259 430 -37 6 1563 207 0 0 0 chr5 128259683 128259706 -24277553 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1563 252 349 0 0 chr5 128259859 128259945 -24277314 + (TG)n Simple_repeat Simple_repeat 1 86 0 6 1563 1003 214 18 45 chr5 128260007 128260227 -24277032 - B3 SINE B2 -1 215 2 6 1563 277 325 29 86 chr5 128260254 128260283 -24276976 - B3A SINE B2 0 198 2 6 1563 695 204 6 100 chr5 128260283 128260463 -24276796 - RSINE1 SINE B4 0 165 3 6 1563 572 293 101 14 chr5 128260466 128260674 -24276585 - B4A SINE B4 -66 226 1 6 1563 399 41 0 0 chr5 128261209 128261258 -24276001 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1563 728 259 0 0 chr5 128261379 128261526 -24275733 - B4A SINE B4 -69 223 77 6 1563 299 320 0 15 chr5 128262695 128262825 -24274434 + (CA)n Simple_repeat Simple_repeat 2 129 0 6 1563 1002 118 11 11 chr5 128263326 128263506 -24273753 + (TATG)n Simple_repeat Simple_repeat 1 180 0 6 1563 266 47 0 44 chr5 128265549 128265594 -24271665 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 6 1563 930 244 26 5 chr5 128265779 128265973 -24271286 + ID_B1 SINE B4 1 198 -26 6 1563 396 59 0 0 chr5 128267022 128267073 -24270186 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 6 1563 292 306 17 34 chr5 128268163 128268339 -24268920 + (CA)n Simple_repeat Simple_repeat 2 174 0 6 1563 209 128 26 0 chr5 128268329 128268368 -24268891 + (CAATA)n Simple_repeat Simple_repeat 3 42 0 6 1563 1723 203 53 117 chr5 128268457 128268892 -24268367 + MTD LTR MaLR 1 407 -12 6 1563 2945 139 39 31 chr5 128269444 128269962 -24267297 + RLTR11A LTR ERVK 7 528 0 6 1563 813 222 101 25 chr5 128270780 128270979 -24266280 + B3 SINE B2 1 214 -2 6 1563 697 234 27 14 chr5 128271108 128271255 -24266004 - B1_Mur1 SINE Alu 0 149 1 6 1563 2313 101 6 0 chr5 128271654 128271970 -24265289 + ORR1A3 LTR MaLR 1 318 -8 6 1563 300 111 0 0 chr5 128272290 128272335 -24264924 + (TTA)n Simple_repeat Simple_repeat 1 45 0 6 1563 243 0 0 0 chr5 128272338 128272365 -24264894 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1563 316 234 0 0 chr5 128273461 128273525 -24263734 - RMER15 LTR ERVL -106 469 406 6 1563 2531 186 54 43 chr5 128273665 128274122 -24263137 + RLTR20B2 LTR ERVK 1 462 -98 6 1563 459 0 0 0 chr5 128274122 128274173 -24263086 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1563 2531 186 54 43 chr5 128274173 128274267 -24262992 + RLTR20B2 LTR ERVK 463 558 -2 6 1563 276 247 169 0 chr5 128274289 128274366 -24262893 - PB1D10 SINE Alu -1 116 27 6 1563 706 284 137 81 chr5 128274741 128275113 -24262146 - MTB_Mm LTR MaLR -14 393 1 6 1563 228 135 0 0 chr5 128275393 128275430 -24261829 + (CCA)n Simple_repeat Simple_repeat 2 38 0 6 1563 207 209 0 0 chr5 128276680 128276723 -24260536 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 6 1563 600 296 51 58 chr5 128276752 128276774 -24260485 - B4A SINE B4 0 292 271 6 1563 315 0 0 0 chr5 128276774 128276809 -24260450 + (TA)n Simple_repeat Simple_repeat 2 36 0 6 1563 600 296 51 58 chr5 128276809 128277080 -24260179 - B4A SINE B4 -22 270 1 6 1563 265 208 13 19 chr5 128278243 128278404 -24258855 + GA-rich Low_complexity Low_complexity 1 159 0 6 1563 920 307 21 14 chr5 128279794 128280075 -24257184 - B4 SINE B4 -2 290 8 6 1563 24 32 0 0 chr5 128280085 128280116 -24257143 + AT_rich Low_complexity Low_complexity 1 31 0 6 1563 583 264 55 22 chr5 128281418 128281600 -24255659 + ORR1E LTR MaLR 4 191 -168 6 1563 216 97 0 0 chr5 128281600 128281631 -24255628 + (TC)n Simple_repeat Simple_repeat 1 31 0 6 1563 938 207 29 6 chr5 128281655 128281825 -24255434 - B3 SINE B2 -6 210 37 6 1563 879 244 33 9 chr5 128281829 128282044 -24255215 + ID_B1 SINE B4 2 221 -3 6 1563 339 286 140 30 chr5 128282141 128282338 -24254921 + B4A SINE B4 43 278 -14 6 1563 263 299 120 92 chr5 128282421 128282605 -24254654 + MLT1B LTR MaLR 98 286 -104 6 1563 835 129 5 43 chr5 128282615 128282801 -24254458 + (TA)n Simple_repeat Simple_repeat 2 180 0 6 1563 250 228 24 71 chr5 128282828 128282913 -24254346 + MLT1B LTR MaLR 310 390 0 6 1563 444 37 0 0 chr5 128283299 128283353 -24253906 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1563 484 232 63 132 chr5 128283376 128283550 -24253709 + MTE2b LTR MaLR 83 244 -135 6 1563 365 271 50 25 chr5 128284323 128284444 -24252815 - MER20 DNA MER1_type -53 166 43 6 1563 321 299 45 45 chr5 128284786 128284940 -24252319 + MLT1G3 LTR MaLR 7 160 -435 6 1563 1305 39 11 17 chr5 128284997 128285178 -24252081 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 6 1563 1224 240 29 4 chr5 128285401 128285677 -24251582 - B4A SINE B4 -6 286 4 6 1563 227 114 68 0 chr5 128286471 128286515 -24250744 + Lx4B LINE L1 7006 7052 -6 6 1563 1682 195 87 6 chr5 128286532 128286867 -24250392 + ORR1D1 LTR MaLR 13 374 0 6 1563 530 278 132 21 chr5 128287361 128287596 -24249663 - L1ME2z LINE L1 -3 6441 6181 6 1563 315 278 111 61 chr5 128287755 128287935 -24249324 + MIR SINE MIR 29 217 -45 6 1563 427 287 40 0 chr5 128288045 128288146 -24249113 + RSINE1 SINE B4 45 149 -16 6 1563 987 226 28 14 chr5 128288230 128288441 -24248818 + B3 SINE B2 2 215 -1 6 1563 1143 58 0 0 chr5 128288459 128288597 -24248662 + B1_Mus1 SINE Alu 1 138 -10 6 1563 287 250 82 32 chr5 128288644 128288780 -24248479 - MTEa LTR MaLR 0 379 221 6 1563 1215 81 11 6 chr5 128289258 128289433 -24247826 - URR1B DNA MER1_type -1 224 49 6 1563 946 183 118 10 chr5 128289743 128289947 -24247312 + URR1A DNA MER1_type 1 226 0 6 1563 925 191 116 0 chr5 128291046 128291245 -24246014 + ID_B1 SINE B4 2 223 -1 6 1563 564 222 103 0 chr5 128292012 128292138 -24245121 + B3 SINE B2 72 210 -6 6 1563 203 62 94 0 chr5 128292181 128292213 -24245046 + A-rich Low_complexity Low_complexity 2 36 0 6 1563 213 256 0 0 chr5 128292303 128292342 -24244917 - B1F1 SINE Alu -41 108 70 6 1563 745 225 115 0 chr5 128292440 128292640 -24244619 - ID_B1 SINE B4 -1 223 1 6 1563 440 295 55 45 chr5 128295040 128295242 -24242017 + RMER15 LTR ERVL 347 550 -25 6 1563 739 232 0 6 chr5 128296032 128296188 -24241071 - RSINE1 SINE B4 -8 157 3 6 1563 279 0 0 0 chr5 128296328 128296359 -24240900 + (TC)n Simple_repeat Simple_repeat 2 32 0 6 1563 581 40 0 13 chr5 128296536 128296613 -24240646 + (CA)n Simple_repeat Simple_repeat 1 76 0 6 1563 338 286 0 0 chr5 128296896 128296987 -24240272 + (CAT)n Simple_repeat Simple_repeat 2 92 0 6 1563 528 246 46 23 chr5 128296991 128297166 -24240093 + HAL1-2a_MD LINE L1 2347 2525 -499 6 1563 338 246 0 8 chr5 128297168 128297299 -24239960 + (CAT)n Simple_repeat Simple_repeat 1 130 0 6 1563 270 325 68 79 chr5 128297519 128297750 -24239509 + MLT1L LTR MaLR 229 474 -136 7 1563 211 271 0 0 chr5 128297841 128297889 -24239370 + (TG)n Simple_repeat Simple_repeat 1 48 0 7 1563 624 304 73 15 chr5 128297928 128298132 -24239127 - B4A SINE B4 -75 217 2 7 1563 273 370 40 68 chr5 128298359 128298536 -24238723 - MER102a DNA MER1_type -158 172 1 7 1563 431 302 112 35 chr5 128299075 128299357 -24237902 + B4 SINE B4 8 269 -23 7 1563 306 222 0 21 chr5 128299381 128299451 -24237808 + B4 SINE B4 230 292 0 7 1563 490 193 22 22 chr5 128299451 128299631 -24237628 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1563 268 224 15 22 chr5 128299695 128299832 -24237427 + (CA)n Simple_repeat Simple_repeat 1 136 0 7 1563 608 103 9 0 chr5 128299857 128299964 -24237295 + (CA)n Simple_repeat Simple_repeat 2 109 0 7 1563 280 298 16 58 chr5 128300210 128300399 -24236860 - L1MA7 LINE L1 0 6291 6111 7 1563 642 217 20 0 chr5 128300405 128300557 -24236702 - L1MA7 LINE L1 -23 6268 6114 7 1563 516 301 81 50 chr5 128300613 128300896 -24236363 - B4A SINE B4 0 292 1 7 1563 330 177 16 0 chr5 128301115 128301177 -24236082 + HAL1-3A_ME LINE L1 1966 2028 -830 7 1563 468 179 31 19 chr5 128301185 128301507 -24235752 + (CA)n Simple_repeat Simple_repeat 1 326 0 7 1563 350 226 50 34 chr5 128301570 128301641 -24235618 + L1MA9 LINE L1 6153 6224 -88 7 1563 342 0 0 0 chr5 128301641 128301679 -24235580 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1563 350 226 50 34 chr5 128301679 128301726 -24235533 + L1MA9 LINE L1 6225 6273 -39 7 1563 331 298 91 40 chr5 128301989 128302164 -24235095 + Lx8 LINE L1 6083 6266 -1207 7 1563 450 0 0 0 chr5 128302379 128302429 -24234830 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1563 924 230 58 0 chr5 128302437 128302628 -24234631 - B3 SINE B2 -13 203 2 7 1563 225 211 0 0 chr5 128303033 128303090 -24234169 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1563 757 246 0 21 chr5 128303215 128303360 -24233899 - RSINE1 SINE B4 -22 143 2 7 1563 874 222 94 15 chr5 128303368 128303569 -24233690 - B4 SINE B4 -75 217 1 7 1563 1207 251 31 80 chr5 128303767 128304117 -24233142 - MTE2b LTR MaLR 0 379 47 7 1563 277 308 75 23 chr5 128305177 128305350 -24231909 - Charlie25 DNA MER1_type -102 2422 2241 7 1563 212 279 33 0 chr5 128305355 128305416 -24231843 + CT-rich Low_complexity Low_complexity 1 63 0 7 1563 488 238 99 62 chr5 128305432 128305593 -24231666 - ORR1E LTR MaLR -16 363 197 7 1563 219 186 0 0 chr5 128305594 128305637 -24231622 + GA-rich Low_complexity Low_complexity 1 43 0 7 1563 513 158 29 35 chr5 128305657 128306008 -24231251 + (CAGAGA)n Simple_repeat Simple_repeat 1 348 0 7 1563 848 223 0 54 chr5 128306013 128306217 -24231042 - ORR1E LTR MaLR -164 195 3 7 1563 861 277 83 58 chr5 128306510 128306786 -24230473 + B4A SINE B4 6 288 -4 7 1563 917 335 62 35 chr5 128307243 128307676 -24229583 - Charlie25 DNA MER1_type -2013 511 67 7 1563 479 281 128 56 chr5 128307841 128307903 -24229356 - B3 SINE B2 -5 211 157 7 1563 1150 7 14 0 chr5 128307903 128308042 -24229217 + (TCTA)n Simple_repeat Simple_repeat 4 144 0 7 1563 479 281 128 56 chr5 128308042 128308175 -24229084 - B3 SINE B2 -60 156 2 7 1563 843 260 24 24 chr5 128308380 128308585 -24228674 + ID_B1 SINE B4 2 206 -18 7 1563 242 128 43 0 chr5 128308689 128308736 -24228523 + GA-rich Low_complexity Low_complexity 4 52 0 7 1563 300 188 0 0 chr5 128308926 128308990 -24228269 + CT-rich Low_complexity Low_complexity 3 66 0 7 1563 803 239 31 41 chr5 128309561 128309757 -24227502 - B3A SINE B2 -3 195 2 7 1563 318 270 45 0 chr5 128310025 128310114 -24227145 - MTE2b LTR MaLR 0 379 287 7 1563 1253 235 38 66 chr5 128310211 128310576 -24226683 + ORR1E LTR MaLR 1 355 -4 7 1563 1120 226 84 47 chr5 128311390 128311407 -24225852 - MTE2b LTR MaLR -46 333 318 7 1563 2218 111 105 0 chr5 128311407 128311739 -24225520 + ORR1B2 LTR MaLR 1 367 0 7 1563 1120 226 84 47 chr5 128311739 128312042 -24225217 - MTE2b LTR MaLR -62 317 1 7 1563 1057 267 54 89 chr5 128312753 128313144 -24224115 + MTEa LTR MaLR 1 377 -2 7 1563 289 275 128 113 chr5 128313189 128313484 -24223775 + MLT1A0 LTR MaLR 86 372 -18 7 1563 285 382 88 28 chr5 128313552 128313835 -24223424 + MamGypLTR3 LTR Gypsy 525 824 -15 7 1563 424 329 45 45 chr5 128313951 128314171 -24223088 + LTR33 LTR ERVL 4 223 -292 7 1563 216 329 24 24 chr5 128315591 128315675 -24221584 + L2a LINE L2 3343 3426 0 7 1563 384 158 0 0 chr5 128315675 128315751 -24221508 + (TGAA)n Simple_repeat Simple_repeat 2 77 0 7 1563 22 0 0 0 chr5 128316350 128316372 -24220887 + AT_rich Low_complexity Low_complexity 1 22 0 7 1563 456 19 0 0 chr5 128316515 128316568 -24220691 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1563 21 57 0 0 chr5 128317297 128317332 -24219927 + AT_rich Low_complexity Low_complexity 1 35 0 7 1563 295 273 15 0 chr5 128317337 128317403 -24219856 - ID4_ SINE ID -15 68 2 7 1563 504 250 78 8 chr5 128317422 128317504 -24219755 - B1F2 SINE Alu -8 141 50 7 1563 1684 196 87 6 chr5 128317504 128317859 -24219400 + ORR1C2 LTR MaLR 1 384 0 7 1563 504 250 78 8 chr5 128317859 128317905 -24219354 - B1F2 SINE Alu -100 49 5 7 1563 1165 311 4 0 chr5 128317935 128318192 -24219067 - B4A SINE B4 0 292 35 7 1563 360 276 24 0 chr5 128318532 128318655 -24218604 - L1MA8 LINE L1 -53 6238 6113 7 1563 1069 284 101 20 chr5 128318718 128319073 -24218186 - MTD LTR MaLR -31 388 5 7 1564 755 266 63 63 chr5 128321680 128321965 -24215294 + RLTR11B LTR ERVK 10 294 -159 7 1564 584 261 13 19 chr5 128322076 128322232 -24215027 + RLTR11B LTR ERVK 284 438 -15 7 1564 259 306 139 35 chr5 128322245 128322360 -24214899 - MLT2B4 LTR ERVL -428 128 2 7 1564 713 240 55 25 chr5 128322506 128322707 -24214552 - B3 SINE B2 -6 210 4 7 1564 244 224 131 10 chr5 128322811 128322910 -24214349 - MLT1H2 LTR MaLR -233 256 146 7 1564 360 328 8 8 chr5 128323107 128323239 -24214020 + (TG)n Simple_repeat Simple_repeat 1 132 0 7 1564 614 241 315 9 chr5 128323241 128323463 -24213796 - B4A SINE B4 -2 290 1 7 1564 22 0 0 0 chr5 128323607 128323629 -24213630 + AT_rich Low_complexity Low_complexity 1 22 0 7 1564 821 200 0 13 chr5 128323664 128323816 -24213443 - B1_Mur4 SINE Alu 0 150 1 7 1564 270 308 78 110 chr5 128323838 128324057 -24213202 + MER102c DNA MER1_type 3 214 -117 7 1564 2612 191 69 19 chr5 128324709 128325289 -24211970 + RLTR17 LTR ERVK 1 609 -83 7 1564 333 0 0 0 chr5 128325296 128325333 -24211926 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1564 191 143 41 0 chr5 128326268 128326317 -24210942 + (TATG)n Simple_repeat Simple_repeat 2 52 0 7 1564 645 118 53 0 chr5 128326310 128326479 -24210780 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 7 1564 184 175 0 31 chr5 128326469 128326534 -24210725 + (TA)n Simple_repeat Simple_repeat 2 64 0 7 1564 672 176 45 8 chr5 128326569 128326838 -24210421 + (TCTA)n Simple_repeat Simple_repeat 1 279 0 7 1564 219 36 0 0 chr5 128327480 128327508 -24209751 + (GA)n Simple_repeat Simple_repeat 1 28 0 7 1564 300 267 27 0 chr5 128327851 128327926 -24209333 + Lx8 LINE L1 6903 6979 -494 7 1564 508 252 52 0 chr5 128327927 128328042 -24209217 + MTEa LTR MaLR 259 379 0 7 1564 788 273 151 19 chr5 128328249 128328619 -24208640 - MTD LTR MaLR 0 419 1 7 1564 702 257 134 51 chr5 128328754 128329029 -24208230 - MTE2a LTR MaLR -9 370 73 7 1564 529 181 75 12 chr5 128329058 128329220 -24208039 - B3 SINE B2 -9 186 2 7 1564 344 345 20 33 chr5 128329220 128329350 -24207909 - MTC LTR MaLR -293 128 1 7 1564 285 75 0 0 chr5 128329397 128329437 -24207822 + (TC)n Simple_repeat Simple_repeat 2 41 0 7 1564 244 293 11 118 chr5 128330352 128330368 -24206891 - RSINE1 SINE B4 0 165 152 7 1564 585 42 0 0 chr5 128330368 128330440 -24206819 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 1564 318 240 98 44 chr5 128330440 128330566 -24206693 - B4 SINE B4 -18 274 83 7 1564 194 174 0 61 chr5 128330739 128330788 -24206471 - MIRm SINE MIR 0 276 231 7 1564 2232 183 20 14 chr5 128331115 128331553 -24205706 + BGLII_B LTR ERVK 1 441 0 7 1564 2226 102 13 0 chr5 128331595 128331910 -24205349 - ORR1A2 LTR MaLR -8 319 1 7 1564 241 299 121 98 chr5 128332339 128332595 -24204664 - L2 LINE L2 -353 3066 2805 7 1564 690 253 6 47 chr5 128332626 128332796 -24204463 - RSINE1 SINE B4 0 165 3 7 1564 201 74 0 0 chr5 128333205 128333232 -24204027 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1564 1321 248 0 14 chr5 128333235 128333521 -24203738 - B4A SINE B4 -10 282 1 7 1564 1440 176 227 3 chr5 128334218 128334549 -24202710 + MTD LTR MaLR 15 419 0 7 1564 679 312 0 50 chr5 128334932 128335134 -24202125 - MTEa LTR MaLR -27 352 161 7 1564 793 227 11 28 chr5 128335160 128335341 -24201918 - B3A SINE B2 -16 182 5 7 1564 578 282 13 19 chr5 128335341 128335500 -24201759 - MTEa LTR MaLR -201 158 1 7 1564 196 338 0 51 chr5 128335695 128335773 -24201486 + MIRb SINE MIR 114 187 -81 7 1564 1006 101 0 0 chr5 128336027 128336165 -24201094 + B1_Mus1 SINE Alu 2 139 -9 7 1564 583 25 0 24 chr5 128336165 128336248 -24201011 + (CAAAC)n Simple_repeat Simple_repeat 2 82 0 7 1564 661 284 161 22 chr5 128336521 128336744 -24200515 + B4 SINE B4 33 286 -6 7 1564 462 18 0 0 chr5 128336767 128336822 -24200437 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1564 625 279 12 12 chr5 128338129 128338289 -24198970 + RSINE1 SINE B4 1 160 -5 7 1564 207 358 11 0 chr5 128338307 128338402 -24198857 + GA-rich Low_complexity Low_complexity 5 100 0 7 1564 1257 130 130 0 chr5 128338483 128338683 -24198576 + URR1A DNA MER1_type 1 226 0 7 1564 218 37 0 0 chr5 128338729 128338756 -24198503 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 1564 651 168 0 0 chr5 128338756 128338875 -24198384 + GA-rich Low_complexity Low_complexity 2 120 0 7 1564 461 17 34 0 chr5 128338875 128338934 -24198325 + (GAAA)n Simple_repeat Simple_repeat 3 63 0 7 1564 508 259 60 8 chr5 128339806 128339923 -24197336 + RSINE1 SINE B4 2 124 -41 7 1564 333 0 0 0 chr5 128339923 128339960 -24197299 + (CA)n Simple_repeat Simple_repeat 2 38 0 7 1564 959 269 127 54 chr5 128339976 128340291 -24196968 + MTEa LTR MaLR 19 356 -23 8 1564 404 340 21 7 chr5 128340396 128340538 -24196721 + Tigger5 DNA MER2_type 20 163 -2243 8 1564 328 291 137 6 chr5 128340601 128340784 -24196475 + Tigger5 DNA MER2_type 2158 2364 -42 8 1564 1247 41 0 13 chr5 128340927 128341076 -24196183 - B1_Mus2 SINE Alu 0 147 1 8 1564 308 152 61 0 chr5 128341137 128341302 -24195957 + (TA)n Simple_repeat Simple_repeat 2 176 0 8 1564 597 64 0 0 chr5 128341798 128341876 -24195383 + (TTTCC)n Simple_repeat Simple_repeat 4 81 0 8 1564 1671 24 5 10 chr5 128341877 128342124 -24195135 - L1Md_F3 LINE L1 0 6584 6370 8 1564 913 57 7 73 chr5 128342127 128342278 -24194981 - L1Md_F2 LINE L1 0 6582 6442 8 1564 234 150 0 0 chr5 128342723 128342763 -24194496 + (CTG)n Simple_repeat Simple_repeat 3 42 0 8 1564 322 315 23 30 chr5 128343103 128343234 -24194025 - L2a LINE L2 -37 3389 3260 8 1564 186 261 50 120 chr5 128343265 128343365 -24193894 + L3 LINE CR1 838 930 -3559 8 1564 236 332 126 51 chr5 128343544 128343918 -24193341 - L2a LINE L2 -543 2876 2475 8 1564 216 0 0 0 chr5 128344300 128344324 -24192935 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1564 213 376 21 11 chr5 128345453 128345547 -24191712 - MIR SINE MIR -144 118 24 8 1564 2966 79 18 13 chr5 128346095 128346493 -24190766 - MTB LTR MaLR 0 400 1 8 1564 591 53 0 0 chr5 128346574 128346649 -24190610 + (GGA)n Simple_repeat Simple_repeat 3 77 0 8 1564 253 358 9 27 chr5 128346916 128347028 -24190231 + MLT1I LTR MaLR 173 282 -313 8 1564 2184 196 105 7 chr5 128347071 128347517 -24189742 - RLTR17 LTR ERVK 0 692 203 8 1564 294 233 12 151 chr5 128348109 128348195 -24189064 - RSINE1 SINE B4 0 165 92 8 1564 5066 60 2 0 chr5 128348195 128348823 -24188436 + L1Md_F2 LINE L1 4958 5586 -297 8 1564 8145 48 7 4 chr5 128348823 128349816 -24187443 + L1Md_F2 LINE L1 5587 6582 0 8 1564 415 250 29 29 chr5 128349845 128349948 -24187311 - RSINE1 SINE B4 -61 104 2 8 1564 1902 248 124 16 chr5 128350067 128350641 -24186618 + Lx8 LINE L1 6829 7464 -9 8 1564 258 341 72 29 chr5 128350714 128350853 -24186406 + MLT1I LTR MaLR 267 411 0 8 1564 949 260 101 103 chr5 128351767 128351930 -24185329 - MTE2a LTR MaLR -2 377 200 8 1564 519 123 0 0 chr5 128351930 128352011 -24185248 + (CA)n Simple_repeat Simple_repeat 2 82 0 8 1564 949 260 101 103 chr5 128352011 128352225 -24185034 - MTE2a LTR MaLR -180 199 2 8 1564 291 337 85 19 chr5 128352420 128352632 -24184627 + L1MA9 LINE L1 6080 6305 -7 8 1564 290 331 14 57 chr5 128352740 128352881 -24184378 + MLT1G3 LTR MaLR 163 297 -298 8 1564 250 310 118 14 chr5 128353153 128353342 -24183917 + MIR SINE MIR 57 262 0 8 1564 308 289 112 34 chr5 128354504 128354683 -24182576 - Charlie8 DNA MER1_type -2140 288 96 8 1564 207 0 0 0 chr5 128355193 128355216 -24182043 + (TTTTTA)n Simple_repeat Simple_repeat 4 26 0 8 1564 2416 215 8 20 chr5 128355311 128356525 -24180734 + L1Md_F LINE L1 2 596 -5923 8 1564 37072 61 1 24 chr5 128356539 128362427 -24174832 + L1Md_T LINE L1 99 5586 -297 8 1564 8133 58 0 0 chr5 128362427 128363458 -24173801 + L1Md_T LINE L1 5587 6582 0 8 1564 831 176 7 7 chr5 128363903 128364046 -24173213 + ID_B1 SINE B4 82 224 0 8 1564 637 280 78 25 chr5 128364245 128364567 -24172692 - L1MB8 LINE L1 -16 6162 5824 8 1564 2142 165 52 22 chr5 128364760 128365163 -24172096 - MTD LTR MaLR -2 417 3 8 1564 210 71 0 0 chr5 128365504 128365532 -24171727 + (TG)n Simple_repeat Simple_repeat 1 28 0 8 1564 396 0 0 0 chr5 128365532 128365575 -24171684 + (GA)n Simple_repeat Simple_repeat 1 44 0 8 1564 794 219 12 12 chr5 128365627 128365793 -24171466 - B3A SINE B2 -30 168 3 8 1564 621 206 244 23 chr5 128366880 128367179 -24170080 + ORR1D2 LTR MaLR 6 370 0 8 1564 1027 301 63 9 chr5 128368676 128369011 -24168248 + Lx8 LINE L1 6606 6958 -515 8 1564 2412 83 16 0 chr5 128369015 128369329 -24167930 - ORR1A2 LTR MaLR -8 319 1 8 1564 474 256 32 0 chr5 128369336 128369461 -24167798 + Lx7 LINE L1 6946 7074 -622 8 1564 382 344 0 0 chr5 128370602 128370753 -24166506 + Lx9 LINE L1 7255 7405 -239 8 1564 243 88 0 0 chr5 128370875 128370909 -24166350 + (CAAG)n Simple_repeat Simple_repeat 1 34 0 8 1564 920 181 14 90 chr5 128371072 128371284 -24165975 - B3A SINE B2 0 198 3 8 1564 22 0 0 0 chr5 128371286 128371308 -24165951 + AT_rich Low_complexity Low_complexity 1 22 0 8 1564 216 0 0 0 chr5 128371425 128371449 -24165810 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 8 1564 366 331 32 7 chr5 128372654 128372809 -24164450 - L1ME1 LINE L1 -19 6160 6002 8 1564 221 261 0 0 chr5 128372873 128372919 -24164340 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1564 687 239 49 89 chr5 128372977 128373133 -24164126 - B3 SINE B2 0 216 54 8 1564 4326 67 26 19 chr5 128373133 128373708 -24163551 + L1Md_F2 LINE L1 6000 6578 -4 8 1564 687 239 49 89 chr5 128373708 128373776 -24163483 - B3 SINE B2 -163 53 2 8 1564 755 310 32 6 chr5 128374017 128374361 -24162898 - L1M3 LINE L1 -1415 4725 4373 8 1564 556 183 13 25 chr5 128374367 128374607 -24162652 + CT-rich Low_complexity Low_complexity 1 236 0 8 1564 406 261 22 30 chr5 128374771 128374890 -24162369 - L1M3 LINE L1 -723 5460 5344 8 1564 1461 171 129 31 chr5 128374890 128375240 -24162019 + ORR1C2 LTR MaLR 1 384 0 8 1564 406 248 18 147 chr5 128375240 128375290 -24161969 - L1M3 LINE L1 -817 5345 5313 8 1564 255 173 0 19 chr5 128375287 128375342 -24161917 - L1M3 LINE L1 -2090 4056 4000 8 1564 312 326 0 0 chr5 128375604 128375690 -24161569 - L1MD2 LINE L1 -477 5882 5797 8 1564 471 260 15 38 chr5 128375697 128375829 -24161430 - L1M3 LINE L1 -2314 3829 3701 8 1564 853 311 148 16 chr5 128375889 128376435 -24160824 - L1MB2 LINE L1 -74 6097 5480 8 1564 2018 119 15 62 chr5 128376478 128376818 -24160441 + ORR1A2 LTR MaLR 4 327 0 8 1564 631 191 21 21 chr5 128376861 128377005 -24160254 - B1_Mur2 SINE Alu -1 148 5 8 1564 328 248 193 24 chr5 128377013 128377165 -24160094 - L1MD LINE L1 -743 5436 5258 8 1564 287 287 10 21 chr5 128377227 128377323 -24159936 - L1M2 LINE L1 -1143 5000 4906 8 1564 2187 113 15 18 chr5 128377383 128377725 -24159534 - ORR1A1 LTR MaLR 0 346 6 8 1564 1903 144 36 52 chr5 128378272 128378602 -24158657 + ORR1A3 LTR MaLR 2 326 0 8 1564 2003 151 46 17 chr5 128379343 128379693 -24157566 + ORR1B2 LTR MaLR 1 360 -7 8 1564 328 255 144 44 chr5 128379926 128380086 -24157173 - HAL1-3A_ME LINE L1 -414 2444 2269 8 1564 1150 224 11 74 chr5 128380091 128380375 -24156884 - B4 SINE B4 -13 279 14 8 1564 23 33 0 0 chr5 128380622 128380652 -24156607 + AT_rich Low_complexity Low_complexity 1 30 0 8 1564 208 241 0 18 chr5 128380828 128380883 -24156376 + L2b LINE L2 3321 3374 -1 8 1564 582 323 52 5 chr5 128381246 128381439 -24155820 - B4A SINE B4 0 292 91 8 1564 573 243 115 18 chr5 128381451 128381668 -24155591 + Lx8 LINE L1 7043 7292 -181 8 1564 36 23 0 0 chr5 128381837 128381880 -24155379 + AT_rich Low_complexity Low_complexity 1 43 0 8 1564 395 230 0 0 chr5 128382272 128382346 -24154913 + B1F SINE Alu 59 132 -17 8 1564 373 331 92 70 chr5 128382769 128383214 -24154045 - L1MEe LINE L1 -3755 1099 645 8 1564 637 247 20 0 chr5 128383480 128383626 -24153633 + B1F SINE Alu 1 149 0 8 1564 411 21 0 0 chr5 128383846 128383894 -24153365 + (TA)n Simple_repeat Simple_repeat 2 49 0 8 1564 927 298 99 12 chr5 128385259 128385714 -24151545 - L1MC1 LINE L1 -187 6146 5624 8 1564 248 336 33 40 chr5 128385918 128386070 -24151189 + Charlie8 DNA MER1_type 76 226 -2202 8 1564 428 331 135 52 chr5 128386387 128386830 -24150429 + Lx8 LINE L1 6993 7472 -1 8 1564 959 227 14 14 chr5 128387390 128387600 -24149659 - B3 SINE B2 -6 210 1 8 1564 982 186 42 32 chr5 128388146 128388363 -24148896 - ID_B1 SINE B4 -5 219 1 8 1564 193 188 118 59 chr5 128389482 128389550 -24147709 - L3 LINE CR1 -3384 1105 1034 8 1564 549 0 0 0 chr5 128390126 128390187 -24147072 + (TC)n Simple_repeat Simple_repeat 2 62 0 8 1564 1177 285 76 20 chr5 128390473 128390715 -24146544 + MTD LTR MaLR 3 258 -161 8 1564 207 0 0 0 chr5 128390715 128390738 -24146521 + (TC)n Simple_repeat Simple_repeat 2 24 0 8 1564 1177 285 76 20 chr5 128390738 128390889 -24146370 + MTD LTR MaLR 259 417 -2 8 1564 349 311 109 65 chr5 128391427 128391670 -24145589 + MLT1J LTR MaLR 46 306 -142 8 1564 283 353 50 33 chr5 128392114 128392368 -24144891 + MamGypLTR1d LTR Gypsy 543 813 0 8 1564 346 206 48 23 chr5 128392581 128392669 -24144590 - MTEa LTR MaLR -5 374 286 8 1564 485 251 80 41 chr5 128393164 128393382 -24143877 + MIR SINE MIR 8 241 -27 8 1564 350 233 22 8 chr5 128393508 128393642 -24143617 + CT-rich Low_complexity Low_complexity 2 137 0 8 1564 501 71 0 0 chr5 128393778 128393848 -24143411 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 1564 307 156 0 0 chr5 128393883 128393928 -24143331 - B3A SINE B2 -81 117 73 8 1564 185 260 0 13 chr5 128393941 128394019 -24143240 + CT-rich Low_complexity Low_complexity 2 78 0 8 1564 716 123 0 7 chr5 128394009 128394156 -24143103 + (TTCC)n Simple_repeat Simple_repeat 4 149 0 8 1564 465 305 188 68 chr5 128394220 128394544 -24142715 + MLT1K LTR MaLR 153 515 -80 8 1564 317 380 28 11 chr5 128394648 128394829 -24142430 + MIRb SINE MIR 40 223 -45 8 1564 618 299 6 6 chr5 128394965 128395123 -24142136 + RSINE1 SINE B4 2 159 -6 8 1564 258 179 0 0 chr5 128395132 128395188 -24142071 + (CA)n Simple_repeat Simple_repeat 1 56 0 8 1564 328 91 0 0 chr5 128395190 128395234 -24142025 + HAL1-3A_ME LINE L1 1975 2018 -840 8 1564 317 323 29 50 chr5 128395712 128395729 -24141530 - B1_Mur2 SINE Alu 0 149 130 8 1564 981 17 0 0 chr5 128395729 128395844 -24141415 + (GGGAGA)n Simple_repeat Simple_repeat 3 117 0 8 1564 346 291 6 59 chr5 128395844 128395966 -24141293 - B1F2 SINE Alu -20 129 13 8 1564 258 319 12 153 chr5 128395868 128395993 -24141266 - ID_B1 SINE B4 -42 182 82 8 1564 2252 114 0 6 chr5 128395993 128396319 -24140940 + ORR1A4 LTR MaLR 1 324 -5 8 1564 597 198 0 9 chr5 128396323 128396435 -24140824 - B3A SINE B2 -81 117 7 8 1564 272 315 83 15 chr5 128396999 128397131 -24140128 - Charlie8 DNA MER1_type -2256 172 32 8 1564 261 244 44 0 chr5 128397706 128397796 -24139463 + CT-rich Low_complexity Low_complexity 1 94 0 9 1564 716 285 19 9 chr5 128398369 128398585 -24138674 - ID_B1 SINE B4 -6 218 1 9 1564 294 29 0 0 chr5 128400440 128400475 -24136784 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 9 1564 421 352 64 53 chr5 128400953 128401217 -24136042 + RMER15 LTR ERVL 309 575 0 9 1564 279 260 26 0 chr5 128401858 128401935 -24135324 + ID4_ SINE ID 4 82 -1 9 1564 241 277 108 8 chr5 128401935 128401978 -24135281 + ID_B1 SINE B4 4 135 -89 9 1564 1149 182 5 41 chr5 128402064 128402282 -24134977 + URR1B DNA MER1_type 1 210 -15 9 1564 357 304 10 10 chr5 128402357 128402453 -24134806 + PB1D7 SINE Alu 16 112 -8 9 1564 701 266 44 25 chr5 128402473 128402677 -24134582 + B3 SINE B2 3 210 -6 9 1564 270 0 0 0 chr5 128402681 128402711 -24134548 + (TAA)n Simple_repeat Simple_repeat 1 30 0 9 1564 1135 192 17 97 chr5 128403250 128403539 -24133720 + MTD LTR MaLR 154 419 0 9 1564 367 223 148 94 chr5 128405030 128405233 -24132026 - B3 SINE B2 0 216 3 9 1564 438 294 21 7 chr5 128405728 128405872 -24131387 + B1F1 SINE Alu 2 147 -2 9 1564 1095 127 0 0 chr5 128405881 128406054 -24131205 + (GA)n Simple_repeat Simple_repeat 1 173 0 9 1564 872 302 33 13 chr5 128406085 128406387 -24130872 - Lx9 LINE L1 -675 6969 6662 9 1564 620 319 122 6 chr5 128406421 128406781 -24130478 + Lx9 LINE L1 7225 7626 -18 9 1564 27 49 0 0 chr5 128406804 128406845 -24130414 + AT_rich Low_complexity Low_complexity 1 41 0 9 1564 242 72 93 23 chr5 128406847 128406890 -24130369 + ID4_ SINE ID 2 47 -36 9 1564 633 187 0 0 chr5 128406890 128407024 -24130235 + (CA)n Simple_repeat Simple_repeat 2 135 0 9 1564 713 234 155 17 chr5 128407727 128407966 -24129293 + B4 SINE B4 2 273 -19 9 1564 237 314 66 50 chr5 128408221 128408402 -24128857 - MER102a DNA MER1_type -126 204 21 9 1564 966 211 62 0 chr5 128408704 128408898 -24128361 + B3 SINE B2 6 211 -5 9 1564 261 0 0 0 chr5 128409017 128409046 -24128213 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1564 800 348 50 4 chr5 128409048 128409308 -24127951 - B4 SINE B4 -20 272 1 9 1564 479 288 62 44 chr5 128409359 128409519 -24127740 - RSINE1 SINE B4 0 165 3 9 1564 672 219 54 14 chr5 128409624 128409772 -24127487 - RSINE1 SINE B4 -11 154 1 9 1564 1740 204 66 25 chr5 128411035 128411051 -24126208 + MTEa LTR MaLR 1 16 -363 9 1564 909 219 138 42 chr5 128411051 128411385 -24125874 + RLTR9A LTR ERVK 1 366 -2 9 1564 1740 204 66 25 chr5 128411385 128411730 -24125529 + MTEa LTR MaLR 17 377 -2 9 1564 445 260 221 60 chr5 128412542 128412759 -24124500 - RMER15 LTR ERVL -43 532 281 9 1564 2199 133 9 0 chr5 128412840 128413163 -24124096 + ORR1A3 LTR MaLR 1 326 0 9 1564 306 106 0 0 chr5 128414031 128414078 -24123181 + (TATG)n Simple_repeat Simple_repeat 4 50 0 9 1564 295 307 126 95 chr5 128414124 128414217 -24123042 - B4 SINE B4 -21 271 1 9 1564 1038 212 6 0 chr5 128414217 128414387 -24122872 - B3A SINE B2 -27 171 1 9 1564 608 277 171 9 chr5 128414924 128415146 -24122113 - B4A SINE B4 -16 276 19 9 1564 531 260 106 1 chr5 128415439 128415607 -24121652 + B3A SINE B2 28 215 -1 9 1564 380 290 212 56 chr5 128415971 128416045 -24121214 + L1MC4a LINE L1 6877 6959 -923 9 1564 347 254 121 15 chr5 128416045 128416177 -24121082 + B1F SINE Alu 4 149 0 9 1564 522 0 0 0 chr5 128416182 128416240 -24121019 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 9 1564 380 290 212 56 chr5 128416240 128416447 -24120812 + L1MC4a LINE L1 6963 7209 -673 9 1564 353 311 156 0 chr5 128416679 128416891 -24120368 - L1M3 LINE L1 -1263 4877 4633 9 1564 1210 259 12 94 chr5 128416909 128417490 -24119769 + L1MB1 LINE L1 4937 5477 -706 9 1564 210 236 0 0 chr5 128417517 128417572 -24119687 + GA-rich Low_complexity Low_complexity 2 56 0 9 1564 656 296 161 25 chr5 128417708 128418186 -24119073 + L1MB1 LINE L1 5551 6093 -75 9 1564 180 0 0 0 chr5 128418336 128418356 -24118903 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 9 1564 451 317 137 0 chr5 128418376 128418559 -24118700 + B3 SINE B2 8 215 -1 9 1564 5753 85 23 1 chr5 128418565 128419343 -24117916 + L1VL4 LINE L1 195 989 -5313 9 1564 16915 145 41 8 chr5 128419324 128423112 -24114147 + Lx LINE L1 2716 6637 -17 9 1564 318 266 62 40 chr5 128423128 128423304 -24113955 - RLTR21 LTR ERVK -319 1253 1074 9 1564 1022 226 14 0 chr5 128423669 128423881 -24113378 - B3 SINE B2 0 216 2 9 1564 369 0 0 0 chr5 128424195 128424236 -24113023 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1564 276 339 229 0 chr5 128424323 128424432 -24112827 - RSINE1 SINE B4 -29 136 3 9 1564 637 183 15 0 chr5 128424432 128424559 -24112700 - B4A SINE B4 -62 230 102 9 1564 203 266 16 0 chr5 128426242 128426306 -24110953 + CT-rich Low_complexity Low_complexity 2 66 0 9 1564 333 216 44 22 chr5 128426378 128426468 -24110791 + RMER10A LTR ERVL 323 414 -28 9 1564 217 307 114 0 chr5 128426732 128426820 -24110439 + B4A SINE B4 5 102 -190 9 1564 333 0 0 0 chr5 128427026 128427063 -24110196 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1564 234 0 0 0 chr5 128428368 128428394 -24108865 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1564 339 25 0 0 chr5 128428451 128428491 -24108768 + (CA)n Simple_repeat Simple_repeat 1 40 0 9 1564 210 243 0 0 chr5 128428522 128428559 -24108700 - ID4_ SINE ID -26 57 21 9 1564 556 242 6 3 chr5 128428592 128428928 -24108331 + (TG)n Simple_repeat Simple_repeat 1 337 0 9 1564 230 232 9 0 chr5 128428981 128429093 -24108166 + (TG)n Simple_repeat Simple_repeat 2 114 0 9 1564 596 333 10 53 chr5 128429100 128429144 -24108115 - B3 SINE B2 -13 203 165 9 1564 240 35 0 0 chr5 128429144 128429173 -24108086 + (TATG)n Simple_repeat Simple_repeat 4 32 0 9 1564 596 333 10 53 chr5 128429173 128429337 -24107922 - B3 SINE B2 -52 164 5 9 1564 384 309 79 29 chr5 128429380 128429520 -24107739 - RSINE1 SINE B4 -2 163 17 9 1564 236 308 124 9 chr5 128429553 128429658 -24107601 - PB1D10 SINE Alu 0 117 1 9 1564 777 261 16 11 chr5 128430179 128430246 -24107013 + ID SINE ID 13 80 -144 9 1564 417 303 34 34 chr5 128430246 128430393 -24106866 + B1F SINE Alu 1 147 -2 9 1564 222 37 0 0 chr5 128430410 128430437 -24106822 + (TAA)n Simple_repeat Simple_repeat 2 28 0 9 1564 829 171 79 149 chr5 128431664 128431735 -24105524 + URR1B DNA MER1_type 1 88 -137 9 1564 252 0 0 0 chr5 128431735 128431763 -24105496 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9 1564 1034 129 0 0 chr5 128431763 128431902 -24105357 - B1_Mus1 SINE Alu -9 139 1 9 1564 829 171 79 149 chr5 128431902 128432070 -24105189 + URR1B DNA MER1_type 89 223 -2 9 1564 511 298 9 0 chr5 128432171 128432285 -24104974 - RSINE1 SINE B4 -49 116 2 9 1564 227 299 16 93 chr5 128432455 128432584 -24104675 - LTR16D2 LTR ERVL -3 569 451 9 1564 720 208 138 6 chr5 128433909 128434083 -24103176 - B3A SINE B2 0 198 2 9 1564 180 0 0 0 chr5 128435733 128435753 -24101506 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1564 213 288 50 0 chr5 128435820 128435900 -24101359 + (TATG)n Simple_repeat Simple_repeat 1 84 0 9 1564 237 82 61 0 chr5 128436022 128436071 -24101188 + (TA)n Simple_repeat Simple_repeat 1 52 0 9 1564 714 272 88 88 chr5 128436386 128436624 -24100635 + B4 SINE B4 32 269 -23 9 1564 525 135 0 0 chr5 128436647 128436736 -24100523 + (GA)n Simple_repeat Simple_repeat 1 89 0 9 1564 587 296 110 23 chr5 128437518 128437781 -24099478 + B4A SINE B4 1 286 -6 9 1564 336 203 78 0 chr5 128438625 128438689 -24098570 - 5S rRNA rRNA -22 99 31 9 1564 265 229 191 18 chr5 128438802 128438998 -24098261 + L1MA8 LINE L1 5820 6047 -244 9 1564 516 206 36 45 chr5 128439001 128439113 -24098146 + B1F SINE Alu 33 143 -6 9 1564 645 25 0 0 chr5 128441185 128441264 -24095995 + (TC)n Simple_repeat Simple_repeat 2 80 0 9 1564 300 111 0 0 chr5 128441570 128441615 -24095644 + (CCCTAA)n Simple_repeat Simple_repeat 6 50 0 9 1564 366 245 25 68 chr5 128442057 128442175 -24095084 + B1F SINE Alu 6 118 -31 9 1564 919 236 151 29 chr5 128442457 128442736 -24094523 + Lx8 LINE L1 6835 7147 -326 9 1564 278 281 39 79 chr5 128442734 128442773 -24094486 + Lx8 LINE L1 7301 7337 -136 9 1564 387 0 0 0 chr5 128442773 128442816 -24094443 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1564 278 281 39 79 chr5 128442816 128442954 -24094305 + Lx8 LINE L1 7338 7471 -2 9 1564 612 314 88 21 chr5 128443125 128443408 -24093851 - L2 LINE L2 -863 2556 2255 9 1564 669 271 150 48 chr5 128443716 128444030 -24093229 + Lx8 LINE L1 6956 7301 -172 9 1564 785 164 36 9 chr5 128444038 128444181 -24093078 - ORR1B2 LTR MaLR -15 364 222 9 1564 879 180 33 9 chr5 128444555 128444885 -24092374 + (TCTA)n Simple_repeat Simple_repeat 1 337 0 9 1564 266 111 40 40 chr5 128444969 128445044 -24092215 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 9 1564 206 178 0 22 chr5 128445055 128445101 -24092158 + (TA)n Simple_repeat Simple_repeat 1 45 0 9 1564 757 77 58 18 chr5 128445109 128445280 -24091979 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 9 1564 541 282 89 17 chr5 128446195 128446375 -24090884 - B3A SINE B2 -3 195 3 9 1564 390 316 0 35 chr5 128446423 128446564 -24090695 - RSINE1 SINE B4 0 165 30 9 1564 555 16 0 0 chr5 128446752 128446816 -24090443 + (TC)n Simple_repeat Simple_repeat 1 64 0 9 1564 604 278 74 0 chr5 128447098 128447260 -24089999 - B4A SINE B4 -95 197 24 9 1564 1768 131 39 63 chr5 128447961 128448296 -24088963 - ORR1A4 LTR MaLR -2 327 1 9 1564 439 281 106 78 chr5 128449209 128449502 -24087757 + ORR1E LTR MaLR 54 354 -5 9 1564 1193 263 61 6 chr5 128450213 128450542 -24086717 + ORR1E LTR MaLR 4 350 -9 9 1565 352 320 87 20 chr5 128450755 128450905 -24086354 - MER2 DNA MER2_type -6 339 180 9 1565 413 283 31 22 chr5 128452079 128452095 -24085164 - ID_B1 SINE B4 -2 222 158 1 1565 659 191 0 0 chr5 128452095 128452210 -24085049 - B1_Mur1 SINE Alu -25 124 10 1 1565 413 283 31 22 chr5 128452210 128452226 -24085033 - ID_B1 SINE B4 -2 157 81 1 1565 614 331 7 0 chr5 128452259 128452413 -24084846 - RSINE1 SINE B4 -9 156 2 1 1565 408 280 50 30 chr5 128452588 128452787 -24084472 + MER58B DNA MER1_type 67 269 -72 1 1565 716 228 32 5 chr5 128453079 128453264 -24083995 + RMER15 LTR ERVL 372 561 -14 1 1565 827 216 20 64 chr5 128453336 128453539 -24083720 - B3A SINE B2 0 198 5 1 1565 1427 192 157 22 chr5 128453949 128454306 -24082953 + MTD LTR MaLR 1 405 -14 1 1565 733 274 53 46 chr5 128454940 128455223 -24082036 + B4A SINE B4 8 292 0 1 1565 1416 164 0 0 chr5 128457630 128457855 -24079404 - URR1B DNA MER1_type 0 225 1 1 1565 851 209 63 29 chr5 128458154 128458361 -24078898 + B3 SINE B2 1 214 -2 1 1565 43 35 0 0 chr5 128458361 128458418 -24078841 + AT_rich Low_complexity Low_complexity 1 57 0 1 1565 186 139 58 11 chr5 128458432 128458519 -24078740 + (TA)n Simple_repeat Simple_repeat 1 91 0 1 1565 359 171 5 128 chr5 128459019 128459207 -24078052 + (GCATG)n Simple_repeat Simple_repeat 3 167 0 1 1565 1206 89 9 6 chr5 128460491 128460703 -24076556 + ZP3AR Satellite Satellite 1 212 0 1 1565 226 288 15 0 chr5 128460703 128460769 -24076490 + ID4_ SINE ID 1 67 -16 1 1565 468 296 51 67 chr5 128461099 128461414 -24075845 + L1M5 LINE L1 5422 5731 -393 1 1565 330 291 58 0 chr5 128461797 128461900 -24075359 - B3A SINE B2 -89 109 1 1 1565 270 0 0 0 chr5 128462753 128462783 -24074476 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1 1565 257 270 27 0 chr5 128462790 128462864 -24074395 - ID4_ SINE ID -3 80 5 1 1565 180 111 0 0 chr5 128462974 128463001 -24074258 + (TTTAG)n Simple_repeat Simple_repeat 3 29 0 1 1565 1711 193 75 28 chr5 128463001 128463098 -24074161 + MTD LTR MaLR 9 105 -314 1 1565 3163 162 37 90 chr5 128463098 128463743 -24073516 + RMER19C LTR ERVK 1 611 0 1 1565 1711 193 75 28 chr5 128463743 128464036 -24073223 + MTD LTR MaLR 106 418 -1 1 1565 549 30 0 0 chr5 128465893 128465960 -24071299 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1565 547 246 99 8 chr5 128466663 128466794 -24070465 - B1_Mur1 SINE Alu 0 149 7 1 1565 210 196 20 0 chr5 128466813 128466864 -24070395 + T-rich Low_complexity Low_complexity 2 53 0 1 1565 317 192 32 0 chr5 128466876 128467001 -24070258 + (TG)n Simple_repeat Simple_repeat 2 130 0 1 1565 403 348 32 0 chr5 128467010 128467168 -24070091 - RSINE1 SINE B4 0 165 3 1 1565 21 71 0 0 chr5 128467168 128467210 -24070049 + AT_rich Low_complexity Low_complexity 1 42 0 1 1565 781 129 14 0 chr5 128467348 128467487 -24069772 + (TC)n Simple_repeat Simple_repeat 2 142 0 1 1565 774 138 8 15 chr5 128467488 128467620 -24069639 - B1_Mus1 SINE Alu -3 145 15 1 1565 219 69 0 0 chr5 128467732 128467761 -24069498 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 1 1565 861 161 210 0 chr5 128467802 128467988 -24069271 + URR1B DNA MER1_type 1 225 0 1 1565 346 181 0 27 chr5 128468143 128468209 -24069050 + BC1_Mm scRNA scRNA 14 79 -73 1 1565 186 43 0 0 chr5 128468209 128468232 -24069027 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1565 372 328 71 48 chr5 128468784 128469012 -24068247 + L1M4c LINE L1 1689 1913 -4203 1 1565 195 42 0 0 chr5 128469012 128469036 -24068223 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1565 387 298 68 39 chr5 128469036 128469366 -24067893 + L1M4c LINE L1 1497 1687 -4697 1 1565 836 153 0 71 chr5 128469503 128469686 -24067573 - RMER10B LTR ERVL 0 398 229 1 1565 567 62 12 0 chr5 128469683 128469763 -24067496 - RMER10B LTR ERVL -298 100 20 1 1565 1527 175 115 14 chr5 128469778 128470125 -24067134 - MTD LTR MaLR -20 399 18 1 1565 438 53 0 0 chr5 128470173 128470230 -24067029 + (GA)n Simple_repeat Simple_repeat 2 58 0 1 1565 781 311 70 27 chr5 128470467 128470495 -24066764 - MTD LTR MaLR -33 386 364 1 1565 2449 137 12 27 chr5 128470495 128470908 -24066351 - MTB_Mm LTR MaLR 0 407 1 1 1565 781 311 70 27 chr5 128470908 128471249 -24066010 - MTD LTR MaLR -56 363 1 1 1565 189 0 0 0 chr5 128471381 128471402 -24065857 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1565 237 246 14 14 chr5 128471849 128471919 -24065340 + ORR1E LTR MaLR 39 108 -251 1 1565 1784 179 84 5 chr5 128472378 128472759 -24064500 + MTD LTR MaLR 9 419 0 1 1565 468 0 0 0 chr5 128473273 128473325 -24063934 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1565 470 218 15 31 chr5 128474623 128474883 -24062376 + GA-rich Low_complexity Low_complexity 1 255 0 1 1565 7211 51 1 7 chr5 128474894 128475779 -24061480 - L1Md_F2 LINE L1 -12 6570 5691 1 1565 231 309 73 21 chr5 128476198 128476294 -24060965 + Lx8 LINE L1 7094 7194 -279 1 1565 230 306 48 58 chr5 128476302 128476406 -24060853 + RMER15 LTR ERVL 344 446 -129 1 1565 315 290 29 58 chr5 128476407 128476579 -24060680 + RMER15 LTR ERVL 396 562 -13 1 1565 252 0 0 0 chr5 128477839 128477867 -24059392 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1565 631 174 7 7 chr5 128477867 128478012 -24059247 + (CA)n Simple_repeat Simple_repeat 2 146 0 1 1565 1369 219 19 138 chr5 128478902 128479331 -24057928 + MTE2a LTR MaLR 1 378 -1 1 1565 421 220 117 28 chr5 128479863 128480008 -24057251 + MLT1D LTR MaLR 8 165 -340 1 1565 181 265 14 42 chr5 128481198 128481269 -24055990 - MER5B DNA MER1_type -74 104 36 1 1565 307 298 0 21 chr5 128481520 128481616 -24055643 + MER57F LTR ERV1 2 95 -341 1 1565 1202 241 107 9 chr5 128481635 128481962 -24055297 + MTD LTR MaLR 25 383 -36 1 1565 604 272 58 73 chr5 128481979 128482253 -24055006 + MER57F LTR ERV1 92 361 -75 1 1565 996 236 93 12 chr5 128482477 128482734 -24054525 - MTD LTR MaLR -136 283 6 1 1565 462 143 0 0 chr5 128483175 128483252 -24054007 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1565 2863 140 34 19 chr5 128483376 128483909 -24053350 + MTC-int LTR MaLR 10 550 -708 1 1565 2019 163 89 18 chr5 128483911 128484304 -24052955 + MTC LTR MaLR 1 421 0 1 1565 485 299 52 43 chr5 128484305 128484515 -24052744 - B4A SINE B4 -80 212 1 1 1565 204 200 0 0 chr5 128485649 128485684 -24051575 + (CGTG)n Simple_repeat Simple_repeat 3 37 0 1 1565 378 196 0 0 chr5 128485684 128485776 -24051483 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 1565 233 322 17 17 chr5 128485833 128485950 -24051309 + Lx8 LINE L1 7353 7469 -4 1 1565 493 277 26 96 chr5 128486083 128486239 -24051020 + RSINE1 SINE B4 1 145 -20 1 1565 354 123 0 0 chr5 128486239 128486296 -24050963 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1565 645 184 0 0 chr5 128486490 128486593 -24050666 - B3 SINE B2 -112 104 2 1 1565 310 315 96 67 chr5 128486984 128487023 -24050236 - L1MD2 LINE L1 -193 6166 6131 1 1565 192 158 0 0 chr5 128487023 128487061 -24050198 + (CATG)n Simple_repeat Simple_repeat 3 40 0 1 1565 310 315 96 67 chr5 128487061 128487365 -24049894 - L1MD2 LINE L1 -229 6130 5813 1 1565 1908 178 45 84 chr5 128487391 128487742 -24049517 - Lx9 LINE L1 -1 7643 7298 1 1565 965 110 93 47 chr5 128487742 128487914 -24049345 - B2_Mm2 SINE B2 -14 181 2 1 1565 1908 178 45 84 chr5 128487914 128488027 -24049232 - Lx9 LINE L1 -347 7297 7197 1 1565 1416 186 166 21 chr5 128488392 128488717 -24048542 + MTEa LTR MaLR 4 375 -4 1 1565 239 311 0 13 chr5 128488889 128488964 -24048295 - L1M5 LINE L1 -325 5848 5775 1 1565 1608 194 74 5 chr5 128489873 128490239 -24047020 + MTD LTR MaLR 18 406 -13 1 1565 807 68 246 0 chr5 128490287 128490405 -24046854 + B1_Mus1 SINE Alu 2 148 0 1 1565 417 286 30 15 chr5 128490533 128490668 -24046591 + MTEa LTR MaLR 5 141 -238 1 1565 372 119 0 0 chr5 128490675 128490734 -24046525 + (CAG)n Simple_repeat Simple_repeat 3 61 0 1 1565 370 345 144 14 chr5 128490734 128490875 -24046384 + MT2A LTR ERVL 149 325 -208 1 1565 1114 165 62 19 chr5 128490875 128491085 -24046174 - URR1A DNA MER1_type 0 226 8 1 1565 539 313 82 24 chr5 128491090 128491296 -24045963 + MT2A LTR ERVL 310 527 -6 1 1565 711 302 49 16 chr5 128492196 128492442 -24044817 + B4 SINE B4 32 285 -7 1 1565 795 174 0 26 chr5 128492771 128492924 -24044335 + B1_Mur2 SINE Alu 1 149 0 1 1565 225 0 0 0 chr5 128492924 128492949 -24044310 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 1 1565 456 315 0 20 chr5 128493458 128493604 -24043655 - ID_B1 SINE B4 -19 205 63 1 1565 243 0 0 0 chr5 128493965 128493992 -24043267 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1565 1184 171 24 10 chr5 128494468 128494675 -24042584 - B3 SINE B2 -6 210 1 1 1565 1060 238 37 80 chr5 128494938 128495312 -24041947 - ORR1D2 LTR MaLR -12 358 1 1 1565 524 211 0 0 chr5 128495362 128495471 -24041788 - B3 SINE B2 -107 109 1 1 1565 216 235 78 0 chr5 128495471 128495510 -24041749 - PB1 SINE Alu -79 48 6 1 1565 299 205 0 25 chr5 128495777 128495857 -24041402 + GA-rich Low_complexity Low_complexity 2 79 0 1 1565 2284 93 9 58 chr5 128496751 128497094 -24040165 + ORR1A3 LTR MaLR 1 326 0 1 1565 208 148 33 0 chr5 128497517 128497578 -24039681 + (TTAA)n Simple_repeat Simple_repeat 4 66 0 1 1565 22 0 0 0 chr5 128497876 128497898 -24039361 + AT_rich Low_complexity Low_complexity 1 22 0 1 1565 687 256 38 5 chr5 128497898 128498083 -24039176 - B3A SINE B2 -3 195 5 1 1565 957 96 1 0 chr5 128498517 128498665 -24038594 - L1_Mm LINE L1 -3458 2422 2269 1 1565 5187 9 0 0 chr5 128498665 128499232 -24038027 + L1Md_T LINE L1 6016 6582 0 1 1565 210 71 0 0 chr5 128499416 128499444 -24037815 + (G)n Simple_repeat Simple_repeat 1 28 0 1 1565 252 0 0 0 chr5 128499972 128500000 -24037259 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1565 883 12 85 0 chr5 128500100 128500265 -24036994 + (GA)n Simple_repeat Simple_repeat 1 179 0 1 1565 678 24 82 24 chr5 128500288 128500458 -24036801 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1565 1022 284 62 9 chr5 128500499 128500836 -24036423 + ORR1E LTR MaLR 1 355 -4 2 1565 1156 309 77 29 chr5 128500969 128501556 -24035703 + Lx8 LINE L1 6857 7471 -2 3 1565 607 314 64 14 chr5 128501843 128502124 -24035135 - Lx9 LINE L1 -298 7346 7052 4 1565 301 324 80 43 chr5 128502511 128502698 -24034561 - B3A SINE B2 -4 194 1 5 1565 338 283 9 9 chr5 128503579 128503686 -24033573 - PB1D10 SINE Alu -8 109 3 6 1565 669 104 18 36 chr5 128504366 128504587 -24032672 + (TCTA)n Simple_repeat Simple_repeat 1 216 0 7 1565 1610 160 11 3 chr5 128505169 128505452 -24031807 + RLTR15 LTR ERVK 73 357 -2 8 1565 490 266 0 0 chr5 128506149 128506262 -24030997 + B3A SINE B2 11 123 -75 9 1565 1137 236 119 26 chr5 128506289 128506667 -24030592 - BGLII_B LTR ERVK -3 438 26 1 1565 207 0 0 0 chr5 128506667 128506690 -24030569 + (CAG)n Simple_repeat Simple_repeat 2 24 0 1 1565 745 242 20 0 chr5 128508473 128508626 -24028633 + B3 SINE B2 15 170 -46 1 1565 410 36 18 0 chr5 128508633 128508689 -24028570 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1565 344 324 108 0 chr5 128508725 128508836 -24028423 + ID_B1 SINE B4 1 123 -101 1 1565 375 377 51 29 chr5 128508915 128509188 -24028071 - MLT1A LTR MaLR -20 354 76 1 1565 268 301 124 29 chr5 128509195 128509332 -24027927 + MER44D DNA MER2_type 1 150 -555 1 1565 384 223 0 0 chr5 128509597 128509700 -24027559 + (TG)n Simple_repeat Simple_repeat 2 104 0 1 1565 1302 78 38 22 chr5 128509708 128509891 -24027368 - B2_Mm2 SINE B2 -8 187 2 1 1565 334 276 0 94 chr5 128509911 128510007 -24027252 - B4 SINE B4 -204 88 2 1 1565 22 0 0 0 chr5 128510298 128510320 -24026939 + AT_rich Low_complexity Low_complexity 1 22 0 2 1565 1506 151 53 0 chr5 128510798 128511082 -24026177 + ORR1B1 LTR MaLR 1 299 -95 2 1565 943 219 114 102 chr5 128511082 128511407 -24025852 + ORR1A4 LTR MaLR 1 329 0 2 1565 574 322 82 71 chr5 128511426 128511793 -24025466 + MTE2a LTR MaLR 1 371 -8 2 1565 457 302 16 16 chr5 128512802 128512930 -24024329 + RSINE1 SINE B4 10 137 -28 2 1565 230 218 0 35 chr5 128513027 128513084 -24024175 - ID_B1 SINE B4 -12 212 158 2 1565 286 159 14 14 chr5 128513698 128513768 -24023491 + (TA)n Simple_repeat Simple_repeat 1 70 0 2 1565 285 341 81 7 chr5 128514002 128514138 -24023121 + Lx8 LINE L1 7009 7154 -319 2 1565 1798 178 16 3 chr5 128514138 128514460 -24022799 + MTD LTR MaLR 1 326 -93 2 1565 276 380 29 48 chr5 128514508 128514820 -24022439 + Lx8 LINE L1 7147 7452 -21 2 1565 825 237 12 0 chr5 128515100 128515273 -24021986 + B3 SINE B2 1 175 -41 2 1565 423 294 144 25 chr5 128515337 128515539 -24021720 - Lx8 LINE L1 -90 5757 5532 3 1565 849 279 68 4 chr5 128515550 128515784 -24021475 + Lx8 LINE L1 7040 7288 -185 3 1565 647 286 147 25 chr5 128516658 128516984 -24020275 - Lx8 LINE L1 0 7473 7108 3 1565 217 284 29 78 chr5 128517017 128517067 -24020192 - B1F SINE Alu -47 102 10 3 1565 229 208 0 0 chr5 128517067 128517115 -24020144 - B4A SINE B4 -149 143 96 3 1565 1155 197 29 0 chr5 128517740 128517948 -24019311 - B3 SINE B2 0 216 3 3 1565 406 255 255 0 chr5 128518174 128518323 -24018936 - B3A SINE B2 -10 188 2 3 1565 338 206 0 56 chr5 128518360 128518432 -24018827 - ID4 SINE ID -11 72 5 3 1565 501 250 82 18 chr5 128519050 128519221 -24018038 - B3A SINE B2 -16 182 1 3 1565 1052 188 71 104 chr5 128519240 128519646 -24017613 + MT2A LTR ERVL 1 531 -70 3 1565 416 0 56 0 chr5 128519656 128519710 -24017549 + (CATAT)n Simple_repeat Simple_repeat 5 61 0 4 1565 271 80 65 26 chr5 128519797 128519874 -24017385 + (TTATA)n Simple_repeat Simple_repeat 5 84 0 4 1565 23 0 0 0 chr5 128519888 128519911 -24017348 + AT_rich Low_complexity Low_complexity 1 23 0 4 1565 189 0 0 0 chr5 128519970 128519991 -24017268 + (CAGAGA)n Simple_repeat Simple_repeat 2 22 0 4 1565 1155 62 0 40 chr5 128520130 128520281 -24016978 + B1_Mm SINE Alu 3 147 0 4 1565 369 0 0 0 chr5 128522520 128522561 -24014698 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1565 608 284 60 41 chr5 128522678 128522994 -24014265 - L1MA8 LINE L1 -247 6044 5723 4 1565 545 257 69 23 chr5 128523159 128523334 -24013925 + MTEb LTR MaLR 1 183 -196 4 1565 948 197 13 88 chr5 128523968 128524196 -24013063 - B3 SINE B2 0 216 6 4 1565 875 275 73 11 chr5 128524640 128524912 -24012347 + B4 SINE B4 2 290 -2 4 1565 198 0 0 0 chr5 128524915 128524937 -24012322 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1565 459 0 0 0 chr5 128524937 128524988 -24012271 + (GA)n Simple_repeat Simple_repeat 2 52 0 5 1565 255 202 53 116 chr5 128525706 128525801 -24011458 + MER20 DNA MER1_type 1 89 -130 5 1565 1625 192 58 3 chr5 128526037 128526402 -24010857 + MTD LTR MaLR 21 405 -14 5 1565 357 253 11 0 chr5 128527051 128527146 -24010113 + B4 SINE B4 146 241 -51 5 1565 310 303 112 14 chr5 128527248 128527384 -24009875 + B3A SINE B2 70 210 -6 5 1565 21 0 0 0 chr5 128528289 128528310 -24008949 + AT_rich Low_complexity Low_complexity 1 21 0 5 1565 697 308 35 35 chr5 128528312 128528556 -24008703 + B4A SINE B4 1 250 -42 5 1565 3093 56 12 17 chr5 128528556 128528958 -24008301 + MTB LTR MaLR 1 400 0 5 1565 697 308 35 35 chr5 128528958 128528999 -24008260 + B4A SINE B4 251 286 -6 5 1565 25 31 0 0 chr5 128529653 128529685 -24007574 + AT_rich Low_complexity Low_complexity 1 32 0 5 1565 1008 199 42 5 chr5 128529704 128529896 -24007363 - B3 SINE B2 -15 201 3 6 1565 207 0 0 0 chr5 128531408 128531431 -24005828 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1565 603 284 49 6 chr5 128531545 128531708 -24005551 + B3A SINE B2 1 170 -28 6 1565 240 111 0 0 chr5 128531708 128531744 -24005515 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1565 545 256 66 50 chr5 128532296 128532538 -24004721 + L1MA5 LINE L1 5327 5572 -728 6 1565 922 253 81 62 chr5 128532559 128532930 -24004329 + Lx8 LINE L1 7079 7456 -17 6 1565 557 311 87 49 chr5 128532990 128533237 -24004022 + L1MA5 LINE L1 5631 5882 -418 6 1565 954 148 0 0 chr5 128533237 128533413 -24003846 + (GGAA)n Simple_repeat Simple_repeat 2 177 0 6 1565 198 0 0 0 chr5 128533414 128533436 -24003823 + (CAGA)n Simple_repeat Simple_repeat 1 22 0 6 1565 557 311 87 49 chr5 128533436 128533575 -24003684 + L1MA5 LINE L1 5883 6031 -269 6 1565 414 0 0 0 chr5 128534112 128534158 -24003101 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1565 279 54 0 0 chr5 128535468 128535505 -24001754 + (CATG)n Simple_repeat Simple_repeat 2 38 0 6 1565 425 237 6 0 chr5 128535507 128535676 -24001583 + (TGGA)n Simple_repeat Simple_repeat 4 173 0 7 1565 974 250 62 61 chr5 128536494 128536718 -24000541 - MTD LTR MaLR -14 405 195 7 1565 3037 172 16 7 chr5 128536718 128537264 -23999995 - Lx4B LINE L1 -7 7051 6501 7 1565 974 267 95 85 chr5 128537264 128537449 -23999810 - MTD LTR MaLR -225 194 1 7 1565 1102 248 26 95 chr5 128538220 128538650 -23998609 + MTE2a LTR MaLR 1 405 -14 7 1565 428 249 261 10 chr5 128538651 128538850 -23998409 - L1MA9 LINE L1 -461 5851 5603 7 1565 324 221 0 0 chr5 128539462 128539575 -23997684 + (CA)n Simple_repeat Simple_repeat 2 114 0 7 1565 25 0 0 0 chr5 128539588 128539613 -23997646 + AT_rich Low_complexity Low_complexity 1 25 0 7 1565 1062 144 0 0 chr5 128540472 128540652 -23996607 + (TC)n Simple_repeat Simple_repeat 1 180 0 7 1565 5487 160 12 8 chr5 128540743 128541631 -23995628 - Lx5 LINE L1 -123 6927 6036 7 1565 604 90 0 0 chr5 128541676 128541754 -23995505 + Lx5 LINE L1 5930 6007 -1043 7 1565 34 24 0 0 chr5 128541939 128541980 -23995279 + AT_rich Low_complexity Low_complexity 1 41 0 8 1565 287 222 0 12 chr5 128541999 128542081 -23995178 + (TG)n Simple_repeat Simple_repeat 2 82 0 8 1565 1000 144 0 20 chr5 128542910 128543059 -23994200 - B1_Mur4 SINE Alu -2 148 3 8 1565 316 281 0 11 chr5 128543443 128543533 -23993726 + GA-rich Low_complexity Low_complexity 1 89 0 8 1565 283 389 113 17 chr5 128543769 128544122 -23993137 + LTR16A LTR ERVL 11 397 -54 8 1565 1923 285 102 25 chr5 128544772 128545543 -23991716 - Lx8 LINE L1 -29 7444 6614 8 1565 258 32 0 0 chr5 128545744 128545775 -23991484 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1565 510 61 0 0 chr5 128546120 128546186 -23991073 + (TG)n Simple_repeat Simple_repeat 1 66 0 8 1565 185 180 0 20 chr5 128546215 128546266 -23990993 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1565 774 280 9 18 chr5 128546821 128547035 -23990224 + ID_B1 SINE B4 3 215 -9 8 1565 357 24 0 0 chr5 128547035 128547077 -23990182 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 9 1565 553 343 21 24 chr5 128547491 128547778 -23989481 + B4A SINE B4 3 288 -4 9 1565 249 356 25 76 chr5 128547989 128548147 -23989112 - B4A SINE B4 -141 151 2 9 1565 2324 262 7 8 chr5 128548175 128548685 -23988574 - Lx6 LINE L1 -26 7434 6568 9 1565 1576 178 34 0 chr5 128549686 128549979 -23987280 - ORR1A3 LTR MaLR 0 326 24 9 1565 677 234 87 5 chr5 128550805 128550990 -23986269 - B3 SINE B2 -12 204 5 9 1565 2226 46 0 62 chr5 128551476 128551800 -23985459 - ORR1A2 LTR MaLR 0 327 24 9 1565 885 230 9 75 chr5 128552362 128552588 -23984671 - B3 SINE B2 -5 211 1 9 1565 233 49 0 68 chr5 128552965 128553009 -23984250 + (T)n Simple_repeat Simple_repeat 1 41 0 9 1565 788 244 186 4 chr5 128554064 128554327 -23982932 - Lx8 LINE L1 -322 7151 6841 9 1565 588 217 16 8 chr5 128554363 128554484 -23982775 - B1_Mur2 SINE Alu 0 149 28 1 1565 265 319 0 0 chr5 128554428 128554497 -23982762 - MT2B LTR ERVL -361 240 172 1 1565 261 0 0 0 chr5 128554796 128554825 -23982434 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1565 697 281 24 0 chr5 128554833 128555000 -23982259 + B3A SINE B2 1 171 -27 1 1565 279 0 0 0 chr5 128555002 128555033 -23982226 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 1 1565 225 0 0 0 chr5 128555145 128555170 -23982089 + (CTTTG)n Simple_repeat Simple_repeat 1 25 0 1 1565 279 310 0 0 chr5 128555177 128555248 -23982011 - PB1D10 SINE Alu -45 72 2 1 1565 555 16 0 0 chr5 128555375 128555439 -23981820 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1565 327 25 0 0 chr5 128555749 128555789 -23981470 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1565 230 56 28 0 chr5 128556763 128556799 -23980460 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1 1565 201 226 0 31 chr5 128556799 128556863 -23980396 + T-rich Low_complexity Low_complexity 2 63 0 1 1565 547 235 0 25 chr5 128557020 128557142 -23980117 - ID_B1 SINE B4 -15 209 91 1 1565 22 0 0 0 chr5 128557570 128557592 -23979667 + AT_rich Low_complexity Low_complexity 1 22 0 1 1565 626 310 14 0 chr5 128559336 128559481 -23977778 - RSINE1 SINE B4 -14 151 5 1 1565 756 281 29 21 chr5 128560718 128560998 -23976261 + L1MA4 LINE L1 5624 5905 -395 1 1565 713 292 54 78 chr5 128561012 128561421 -23975838 - MTC LTR MaLR -17 404 6 1 1565 381 22 0 0 chr5 128561461 128561507 -23975752 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1565 1191 237 94 18 chr5 128562814 128563013 -23974246 + MTEb LTR MaLR 1 200 -179 1 1565 207 0 0 0 chr5 128563013 128563036 -23974223 + (TC)n Simple_repeat Simple_repeat 2 24 0 1 1565 1191 237 94 18 chr5 128563036 128563175 -23974084 + MTEb LTR MaLR 201 364 -15 1 1565 255 122 0 0 chr5 128563182 128563231 -23974028 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1565 583 300 5 48 chr5 128563257 128563446 -23973813 - B3A SINE B2 -15 183 3 1 1565 401 304 0 0 chr5 128564375 128564467 -23972792 - RSINE1 SINE B4 -72 93 2 1 1565 312 340 51 15 chr5 128565235 128565432 -23971827 - MER20B DNA MER1_type -11 772 569 1 1565 564 320 11 11 chr5 128565635 128565812 -23971447 - B3A SINE B2 -19 179 3 1 1565 709 103 33 33 chr5 128565898 128566049 -23971210 - RMER17B LTR ERVK -498 460 310 1 1565 713 278 82 120 chr5 128566619 128567011 -23970248 + MTE2a LTR MaLR 1 377 -2 1 1565 280 322 38 82 chr5 128567961 128568120 -23969139 + MTEa LTR MaLR 32 183 -196 1 1565 2400 161 47 9 chr5 128568459 128568941 -23968318 - RLTR11A LTR ERVK -1 527 1 1 1565 891 211 84 51 chr5 128568941 128569216 -23968043 - MYSERV-int LTR ERVK 0 6550 6267 1 1565 1632 189 16 6 chr5 128569219 128569539 -23967720 - MYSERV16_I-int LTR ERVK -339 1987 1665 1 1565 366 250 157 8 chr5 128570210 128570331 -23966928 + B1F1 SINE Alu 10 148 -1 1 1565 212 308 15 0 chr5 128570339 128570404 -23966855 + ID4 SINE ID 2 67 -16 1 1565 198 143 0 0 chr5 128571603 128571638 -23965621 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1565 484 329 6 12 chr5 128571734 128571900 -23965359 + (TATG)n Simple_repeat Simple_repeat 2 166 0 1 1565 189 0 0 0 chr5 128572038 128572059 -23965200 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1565 351 0 0 0 chr5 128573813 128573852 -23963407 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1565 305 52 310 0 chr5 128573852 128573910 -23963349 - BC1_Mm scRNA scRNA -75 77 2 1 1565 320 367 26 31 chr5 128574072 128574300 -23962959 + MER115 DNA Tip100 403 629 -64 1 1565 313 190 0 20 chr5 128574481 128574583 -23962676 + GA-rich Low_complexity Low_complexity 3 102 0 1 1565 240 267 17 0 chr5 128574585 128574645 -23962614 + ID2 SINE ID 19 79 -4 1 1565 241 297 119 35 chr5 128575515 128575658 -23961601 + MER102a DNA MER1_type 107 261 -69 1 1565 570 15 0 0 chr5 128576038 128576105 -23961154 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1565 1197 249 71 58 chr5 128576105 128576570 -23960689 - RLTR20B3 LTR ERVK -106 471 1 1 1565 1391 77 5 11 chr5 128576594 128576753 -23960506 + B2_Mm1a SINE B2 2 160 -33 1 1565 243 0 0 0 chr5 128576753 128576780 -23960479 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1565 1391 77 5 11 chr5 128576780 128576805 -23960454 + B2_Mm1a SINE B2 161 185 -8 1 1565 1343 153 18 18 chr5 128577159 128577385 -23959874 + URR1A DNA MER1_type 1 226 0 1 1565 192 40 0 0 chr5 128577563 128577588 -23959671 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1 1565 207 0 0 0 chr5 128577905 128577928 -23959331 + (TTG)n Simple_repeat Simple_repeat 1 23 0 1 1565 207 0 0 0 chr5 128577974 128577997 -23959262 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1565 1325 226 50 24 chr5 128578153 128578533 -23958726 + MTD LTR MaLR 1 390 -29 1 1565 605 283 52 0 chr5 128579378 128579551 -23957708 - B3A SINE B2 -16 182 1 1 1565 725 176 182 0 chr5 128579863 128580028 -23957231 + B3 SINE B2 1 195 -21 1 1565 230 0 0 32 chr5 128580632 128580663 -23956596 + (CAGCT)n Simple_repeat Simple_repeat 1 30 0 1 1565 354 281 0 0 chr5 128581112 128581331 -23955928 + (CA)n Simple_repeat Simple_repeat 1 219 0 1 1565 227 304 12 12 chr5 128581344 128581424 -23955835 - ID4 SINE ID -3 80 1 1 1565 903 19 0 0 chr5 128581426 128581531 -23955728 + (TTCC)n Simple_repeat Simple_repeat 3 107 0 1 1566 229 274 47 12 chr5 128581677 128581762 -23955497 + B4 SINE B4 201 288 -4 1 1566 1117 229 77 24 chr5 128582008 128582344 -23954915 - Lx8 LINE L1 -5 7468 7115 1 1566 207 236 0 35 chr5 128582345 128582402 -23954857 + G-rich Low_complexity Low_complexity 3 57 0 1 1566 755 302 0 18 chr5 128582421 128582647 -23954612 - Lx8 LINE L1 -373 7100 6879 1 1566 457 241 46 9 chr5 128582647 128582756 -23954503 - ID_B1 SINE B4 -14 210 98 1 1566 303 140 0 0 chr5 128582941 128582991 -23954268 + (T)n Simple_repeat Simple_repeat 1 50 0 1 1566 502 260 0 30 chr5 128583786 128583917 -23953342 - RSINE1 SINE B4 -36 129 3 1 1566 1615 185 59 35 chr5 128584119 128584545 -23952714 + RLTR11A LTR ERVK 10 445 -83 1 1566 333 68 0 0 chr5 128584546 128584590 -23952669 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1566 516 77 0 0 chr5 128584590 128584668 -23952591 + (GA)n Simple_repeat Simple_repeat 2 79 0 1 1566 369 308 92 18 chr5 128586272 128586490 -23950769 - L1MA6 LINE L1 -6 6294 6061 1 1566 531 267 78 16 chr5 128586525 128586738 -23950521 + L1MA5 LINE L1 5764 5989 -311 1 1566 660 311 59 5 chr5 128586942 128587162 -23950097 + B4A SINE B4 2 233 -59 1 1566 894 218 32 11 chr5 128587165 128587355 -23949904 + B3 SINE B2 23 216 0 1 1566 246 191 122 81 chr5 128587364 128587438 -23949821 + B4A SINE B4 216 292 0 1 1566 209 219 0 0 chr5 128587440 128587481 -23949778 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 1 1566 285 255 59 39 chr5 128588273 128588375 -23948884 + L2b LINE L2 3271 3374 -1 1 1566 522 0 0 0 chr5 128588474 128588532 -23948727 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1566 249 33 0 0 chr5 128588664 128588694 -23948565 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1 1566 252 0 0 0 chr5 128588744 128588772 -23948487 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1 1566 818 187 118 65 chr5 128588950 128589179 -23948080 - ORR1C2 LTR MaLR 0 384 144 1 1566 700 245 0 0 chr5 128589186 128589329 -23947930 - B3 SINE B2 -67 149 7 1 1566 785 255 50 53 chr5 128589382 128589664 -23947595 + B4A SINE B4 2 282 -10 1 1566 570 15 0 0 chr5 128589784 128589851 -23947408 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1566 311 259 12 12 chr5 128590044 128590130 -23947129 + CT-rich Low_complexity Low_complexity 3 88 0 1 1566 922 232 23 23 chr5 128590273 128590460 -23946799 + B3 SINE B2 1 191 -25 1 1566 2147 183 0 13 chr5 128590460 128590836 -23946423 - ORR1D1 LTR MaLR -3 371 1 1 1566 922 232 23 23 chr5 128590836 128590864 -23946395 + B3 SINE B2 192 216 0 1 1566 1219 94 44 6 chr5 128590891 128591072 -23946187 - Lx4B LINE L1 -327 6731 6544 1 1566 1271 176 12 12 chr5 128591072 128591313 -23945946 + Lx4B LINE L1 6810 7050 -8 1 1566 713 241 133 5 chr5 128591444 128591640 -23945619 + ID_B1 SINE B4 1 221 -3 1 1566 835 221 37 28 chr5 128592103 128592317 -23944942 + B3 SINE B2 1 216 0 1 1566 277 225 111 48 chr5 128592317 128592443 -23944816 - L1ME1 LINE L1 -3 6176 6043 1 1566 211 211 0 37 chr5 128592625 128592679 -23944580 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 1 1566 862 223 62 5 chr5 128592949 128593114 -23944145 + B3 SINE B2 1 166 -50 1 1566 180 0 0 0 chr5 128593114 128593134 -23944125 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1566 862 223 62 5 chr5 128593134 128593162 -23944097 + B3 SINE B2 167 204 -12 1 1566 181 54 108 0 chr5 128593170 128593207 -23944052 + GA-rich Low_complexity Low_complexity 2 42 0 1 1566 1149 85 11 6 chr5 128593207 128593384 -23943875 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1 1566 482 255 80 7 chr5 128593443 128593581 -23943678 - B1F1 SINE Alu -1 148 1 1 1566 274 262 0 48 chr5 128593682 128593766 -23943493 - L1M4 LINE L1 -768 5378 5299 1 1566 823 271 14 9 chr5 128594075 128594295 -23942964 - ID_B1 SINE B4 -2 222 2 1 1566 198 0 0 0 chr5 128595113 128595135 -23942124 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1566 324 70 0 0 chr5 128595955 128595998 -23941261 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 1 1566 989 294 3 37 chr5 128596194 128596491 -23940768 + B4A SINE B4 1 287 -5 1 1566 531 0 0 0 chr5 128597920 128597979 -23939280 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1566 487 219 12 83 chr5 128598009 128598178 -23939081 - Lx7 LINE L1 0 7696 7540 1 1566 213 121 0 0 chr5 128598278 128598311 -23938948 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1566 387 0 0 0 chr5 128598311 128598354 -23938905 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2 1566 1947 191 54 10 chr5 128598361 128598747 -23938512 - Lx7 LINE L1 -391 7305 6903 1 1566 1627 180 13 7 chr5 128598763 128599070 -23938189 - ORR1B1 LTR MaLR -13 381 73 2 1566 578 285 21 26 chr5 128599231 128599422 -23937837 + B4 SINE B4 103 292 0 2 1566 349 271 22 29 chr5 128601014 128601151 -23936108 + HAL1-2a_MD LINE L1 2345 2480 -544 2 1566 645 307 24 19 chr5 128601156 128601365 -23935894 - ID_B1 SINE B4 -13 211 2 2 1566 709 293 26 5 chr5 128601960 128602149 -23935110 + ID_B1 SINE B4 9 201 -23 2 1566 399 246 69 39 chr5 128602537 128602684 -23934575 + B1F SINE Alu 2 131 -18 2 1566 1106 56 5 38 chr5 128602695 128602881 -23934378 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2 1566 237 286 18 0 chr5 128602881 128602937 -23934322 + polypurine Low_complexity Low_complexity 5 61 0 2 1566 735 333 0 13 chr5 128604395 128604629 -23932630 + B4 SINE B4 9 239 -53 2 1566 610 263 128 14 chr5 128605686 128605908 -23931351 + B4 SINE B4 2 246 -46 2 1566 506 173 0 9 chr5 128605908 128606013 -23931246 + GA-rich Low_complexity Low_complexity 1 104 0 2 1566 841 128 5 27 chr5 128606019 128606076 -23931183 + polypurine Low_complexity Low_complexity 1 57 0 2 1566 594 0 0 0 chr5 128606076 128606142 -23931117 + (GAA)n Simple_repeat Simple_repeat 3 68 0 2 1566 841 128 5 27 chr5 128606142 128606268 -23930991 + polypurine Low_complexity Low_complexity 58 180 0 2 1566 526 209 6 33 chr5 128606224 128606407 -23930852 + GA-rich Low_complexity Low_complexity 3 180 0 2 1566 686 202 173 0 chr5 128606408 128606576 -23930683 + B3 SINE B2 7 203 -13 2 1566 1606 187 87 0 chr5 128606728 128607059 -23930200 + MTD LTR MaLR 56 402 -5 2 1566 2006 143 6 20 chr5 128607699 128608055 -23929204 - ORR1B2 LTR MaLR 0 367 17 2 1566 1670 58 4 0 chr5 128608056 128608282 -23928977 - MTB LTR MaLR -52 348 122 2 1566 5934 58 1 1 chr5 128608283 128609020 -23928239 - L1Md_F2 LINE L1 -12 6570 5834 2 1566 342 0 0 0 chr5 128609167 128609205 -23928054 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1566 232 291 0 0 chr5 128609325 128609380 -23927879 + C-rich Low_complexity Low_complexity 2 56 0 2 1566 855 244 88 27 chr5 128609381 128609642 -23927617 - Lx8 LINE L1 -146 7327 7051 2 1566 423 0 0 0 chr5 128610212 128610259 -23927000 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1566 961 258 40 62 chr5 128610546 128610868 -23926391 - Lx8 LINE L1 -441 7032 6718 2 1566 226 316 77 41 chr5 128611044 128611239 -23926020 - L1M4 LINE L1 -349 5825 5624 2 1566 540 65 0 0 chr5 128611857 128611934 -23925325 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 1566 1323 151 9 5 chr5 128612239 128612459 -23924800 + URR1B DNA MER1_type 5 225 0 2 1566 1242 262 49 23 chr5 128612653 128613043 -23924216 + MTD LTR MaLR 5 404 -15 2 1566 252 261 32 21 chr5 128613167 128613261 -23923998 - MER113 DNA MER1_type -101 420 326 2 1566 193 253 25 25 chr5 128614584 128614665 -23922594 - L2b LINE L2 -5 3370 3290 2 1566 258 296 31 0 chr5 128615242 128615340 -23921919 + (TCCA)n Simple_repeat Simple_repeat 2 102 0 2 1566 349 109 31 0 chr5 128615366 128615430 -23921829 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 2 1566 888 292 110 42 chr5 128615438 128615566 -23921693 - ORR1E LTR MaLR 0 359 229 2 1566 815 174 7 7 chr5 128615566 128615705 -23921554 + B1_Mus2 SINE Alu 2 140 -7 2 1566 207 100 0 0 chr5 128615705 128615735 -23921524 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 2 1566 888 292 110 42 chr5 128615740 128615947 -23921312 - ORR1E LTR MaLR -131 228 1 2 1566 209 189 0 0 chr5 128615950 128615987 -23921272 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 2 1566 201 39 0 0 chr5 128616257 128616283 -23920976 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1566 40 21 0 0 chr5 128617667 128617714 -23919545 + AT_rich Low_complexity Low_complexity 1 47 0 2 1566 367 241 36 98 chr5 128618054 128618247 -23919012 + HAL1-2a_MD LINE L1 2345 2525 -499 2 1566 396 103 0 0 chr5 128618273 128618331 -23918928 + (TCC)n Simple_repeat Simple_repeat 2 59 0 2 1566 2821 129 69 35 chr5 128618486 128618993 -23918266 + RLTR28 LTR ERVL 1 524 0 2 1566 2311 125 9 20 chr5 128619686 128619757 -23917502 - ORR1A1 LTR MaLR 0 346 281 2 1566 1130 68 0 14 chr5 128619757 128619894 -23917365 + B1_Mus1 SINE Alu 1 137 -11 2 1566 229 0 54 27 chr5 128619894 128619931 -23917328 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 1566 2311 125 9 20 chr5 128619941 128620219 -23917040 - ORR1A1 LTR MaLR -66 280 1 2 1566 339 282 118 20 chr5 128620363 128620515 -23916744 + MER68 LTR ERVL 101 267 -296 2 1566 1810 150 19 82 chr5 128620540 128620918 -23916341 + ORR1B1 LTR MaLR 41 394 0 2 1566 254 363 60 38 chr5 128620941 128621176 -23916083 + MER77 LTR ERVL 357 596 -11 2 1566 502 256 34 129 chr5 128621177 128621441 -23915818 + RLTR42 LTR ERVK 1 239 0 2 1566 2976 159 58 4 chr5 128621514 128621589 -23915670 - RLTR20D LTR ERVK 0 568 466 2 1566 312 27 0 0 chr5 128621589 128621626 -23915633 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 1566 2976 159 58 4 chr5 128621626 128622086 -23915173 - RLTR20D LTR ERVK -103 465 5 2 1566 519 286 122 18 chr5 128622460 128622708 -23914551 + B4A SINE B4 5 279 -13 2 1566 2073 124 90 3 chr5 128624042 128624397 -23912862 - ORR1B1 LTR MaLR -8 386 1 2 1566 292 328 35 55 chr5 128625078 128625223 -23912036 - MLT1J1 LTR MaLR -116 328 187 2 1566 3163 30 0 27 chr5 128626124 128626499 -23910760 + RLTR10B2 LTR ERVK 1 365 0 2 1566 579 278 204 30 chr5 128626980 128627284 -23909975 + ORR1E LTR MaLR 1 357 -2 2 1566 183 156 0 0 chr5 128627695 128627727 -23909532 + C-rich Low_complexity Low_complexity 6 37 0 2 1566 685 132 85 0 chr5 128629843 128629972 -23907287 + B1_Mur4 SINE Alu 11 150 0 2 1566 316 225 50 0 chr5 128630680 128630760 -23906499 + MTD LTR MaLR 65 148 -231 2 1566 283 234 0 0 chr5 128630815 128630879 -23906380 - MERVL-int LTR ERVL -968 4517 4454 2 1566 617 244 40 40 chr5 128630885 128631037 -23906222 + MTD LTR MaLR 233 405 -14 2 1566 686 292 58 62 chr5 128631132 128631424 -23905835 - B4 SINE B4 -1 291 1 2 1566 499 264 122 11 chr5 128631473 128631653 -23905606 - ORR1E LTR MaLR 0 370 171 2 1566 422 212 12 12 chr5 128631655 128631827 -23905432 + GA-rich Low_complexity Low_complexity 2 173 0 2 1566 219 220 0 0 chr5 128631856 128631906 -23905353 + GA-rich Low_complexity Low_complexity 2 51 0 2 1566 766 162 0 7 chr5 128631917 128632060 -23905199 - ORR1E LTR MaLR -178 181 40 2 1566 296 94 0 0 chr5 128632136 128632188 -23905071 + B1_Mur4 SINE Alu 41 93 -57 2 1566 830 161 7 0 chr5 128633340 128633483 -23903776 - B1_Mur4 SINE Alu -1 149 6 2 1566 1272 218 169 22 chr5 128633491 128633852 -23903407 - MTD LTR MaLR -2 417 4 2 1566 183 42 0 0 chr5 128635169 128635193 -23902066 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1566 470 344 7 0 chr5 128635337 128635488 -23901771 + B4 SINE B4 59 210 -82 2 1566 504 100 0 0 chr5 128635492 128635572 -23901687 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 2 1566 1345 171 181 56 chr5 128636644 128637003 -23900256 - MTD LTR MaLR -4 415 12 2 1566 3265 231 31 28 chr5 128637154 128638023 -23899236 - RCHARR1 DNA MER1_type -29 945 74 2 1566 2227 142 7 75 chr5 128638267 128638694 -23898565 - RMER10B LTR ERVL 0 398 1 2 1566 399 266 51 45 chr5 128638807 128638945 -23898314 + MTEb LTR MaLR 243 379 0 2 1566 646 247 121 53 chr5 128639731 128640086 -23897173 + RMER13A LTR ERVK 88 466 -394 2 1566 243 0 0 0 chr5 128640131 128640158 -23897101 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1566 702 259 60 0 chr5 128640187 128640353 -23896906 + MTEa LTR MaLR 204 379 0 2 1566 354 261 65 13 chr5 128641124 128641279 -23895980 - MER3 DNA MER1_type -1 208 46 2 1566 234 317 0 0 chr5 128641394 128641476 -23895783 - MER3 DNA MER1_type -127 82 1 2 1566 937 261 72 26 chr5 128641476 128641862 -23895397 - Charlie2b DNA MER1_type -32 2750 2347 2 1566 1597 212 39 3 chr5 128641988 128642352 -23894907 + MTD LTR MaLR 42 418 -1 2 1566 338 314 103 58 chr5 128642574 128642817 -23894442 - B4A SINE B4 -24 268 15 2 1566 1437 271 102 60 chr5 128642818 128643506 -23893753 + L1_Rod LINE L1 4851 5567 -280 2 1566 230 333 54 0 chr5 128643557 128643650 -23893609 - MLT1I LTR MaLR -6 405 308 2 1566 660 91 0 0 chr5 128643719 128643829 -23893430 + (GA)n Simple_repeat Simple_repeat 2 111 0 2 1566 1390 229 62 17 chr5 128643958 128644253 -23893006 - MTEa LTR MaLR -7 372 78 2 1566 537 16 0 0 chr5 128644253 128644315 -23892944 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1566 1390 229 62 17 chr5 128644315 128644375 -23892884 - MTEa LTR MaLR -302 77 3 2 1566 991 236 52 125 chr5 128644642 128645049 -23892210 + MTE2a LTR MaLR 3 379 0 2 1566 459 0 0 0 chr5 128645748 128645799 -23891460 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1566 459 0 0 0 chr5 128645799 128645849 -23891410 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1566 315 49 0 0 chr5 128647877 128647918 -23889341 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1566 567 140 23 47 chr5 128648609 128648781 -23888478 + (TCTG)n Simple_repeat Simple_repeat 4 171 0 2 1566 243 146 0 0 chr5 128648799 128648840 -23888419 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 2 1566 294 29 0 0 chr5 128649209 128649244 -23888015 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 1566 198 0 0 0 chr5 128649253 128649275 -23887984 + (CA)n Simple_repeat Simple_repeat 1 22 0 2 1566 515 249 94 64 chr5 128649275 128649541 -23887718 - B4 SINE B4 -18 274 1 2 1566 234 307 81 49 chr5 128651152 128651375 -23885884 + Charlie1a DNA MER1_type 117 346 -1109 2 1566 303 299 25 96 chr5 128651471 128651723 -23885536 + MTD LTR MaLR 1 205 -174 2 1566 283 315 9 0 chr5 128651750 128651858 -23885401 + Charlie1a DNA MER1_type 737 845 -610 2 1566 555 81 0 0 chr5 128651999 128652085 -23885174 + (TC)n Simple_repeat Simple_repeat 1 86 0 2 1566 291 28 0 0 chr5 128652085 128652121 -23885138 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1566 538 240 47 54 chr5 128652137 128652414 -23884845 + Charlie1a DNA MER1_type 1095 1369 -86 2 1566 925 234 75 0 chr5 128652484 128652685 -23884574 + B3 SINE B2 1 216 0 2 1566 30 27 0 0 chr5 128652791 128652828 -23884431 + AT_rich Low_complexity Low_complexity 1 37 0 2 1566 711 250 12 41 chr5 128652834 128653005 -23884254 - B3 SINE B2 0 216 51 2 1566 22 0 0 0 chr5 128653312 128653334 -23883925 + AT_rich Low_complexity Low_complexity 1 22 0 3 1566 378 0 0 0 chr5 128653373 128653415 -23883844 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1566 770 285 36 0 chr5 128655177 128655370 -23881889 + B3 SINE B2 9 208 -8 3 1566 372 259 0 0 chr5 128656084 128656219 -23881040 + (TG)n Simple_repeat Simple_repeat 2 136 0 3 1566 394 276 7 0 chr5 128656237 128656515 -23880744 + (TG)n Simple_repeat Simple_repeat 1 280 0 3 1566 1111 271 21 7 chr5 128656530 128656816 -23880443 - B4 SINE B4 0 292 3 3 1566 741 280 47 0 chr5 128656847 128657040 -23880219 - B3 SINE B2 -14 202 1 3 1566 461 245 40 113 chr5 128657579 128657827 -23879432 - MER2 DNA MER2_type -13 332 103 3 1566 584 264 7 0 chr5 128658634 128658774 -23878485 + ID_B1 SINE B4 1 141 -83 3 1566 3487 111 38 25 chr5 128658768 128659434 -23877825 - RMER17A LTR ERVK -263 695 1 3 1566 408 159 10 111 chr5 128659434 128659533 -23877726 + ID_B1 SINE B4 136 224 0 3 1566 415 215 8 93 chr5 128659850 128659968 -23877291 + PB1D10 SINE Alu 1 108 -9 3 1566 288 0 0 0 chr5 128660002 128660034 -23877225 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 3 1566 1216 259 68 44 chr5 128660096 128660552 -23876707 + Lx8 LINE L1 7005 7471 -2 3 1566 430 259 0 41 chr5 128660723 128660844 -23876415 + L1ME2z LINE L1 6180 6295 -149 3 1566 438 288 52 7 chr5 128660941 128661095 -23876164 + RSINE1 SINE B4 3 163 -2 3 1566 363 78 0 0 chr5 128661186 128661237 -23876022 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1566 321 308 11 0 chr5 128661785 128661876 -23875383 - B4A SINE B4 -199 93 2 3 1566 535 261 31 0 chr5 128662436 128662566 -23874693 - RSINE1 SINE B4 -16 149 16 3 1566 750 231 82 146 chr5 128662803 128663208 -23874051 - MTE2a LTR MaLR 0 379 1 3 1566 216 0 0 0 chr5 128663308 128663332 -23873927 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 3 1566 261 311 9 28 chr5 128663443 128663549 -23873710 + MTEb LTR MaLR 276 379 0 3 1566 1283 218 78 10 chr5 128663887 128664193 -23873066 - MTEa LTR MaLR -2 377 51 3 1566 226 125 0 40 chr5 128664464 128664514 -23872745 + G-rich Low_complexity Low_complexity 6 53 0 3 1566 1443 214 87 51 chr5 128664876 128665266 -23871993 - MTC LTR MaLR -17 404 1 3 1566 522 295 84 10 chr5 128665269 128665471 -23871788 - Lx8 LINE L1 -103 7370 7154 3 1566 325 277 31 21 chr5 128665476 128665572 -23871687 + Lx8 LINE L1 6959 7055 -418 3 1566 405 0 0 0 chr5 128666297 128666342 -23870917 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1566 401 265 40 20 chr5 128666342 128666442 -23870817 - B3 SINE B2 -51 165 64 3 1566 686 256 30 45 chr5 128666689 128666711 -23870548 - B3A SINE B2 0 198 175 3 1566 450 0 0 0 chr5 128666711 128666761 -23870498 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1566 686 256 30 45 chr5 128666761 128666938 -23870321 - B3A SINE B2 -24 174 2 3 1566 303 215 24 37 chr5 128667504 128667586 -23869673 - MLT1J LTR MaLR -3 509 429 3 1566 1121 255 91 31 chr5 128668177 128668497 -23868762 + ORR1E LTR MaLR 15 353 -6 3 1566 955 256 45 108 chr5 128668583 128668816 -23868443 - MTD LTR MaLR 0 419 211 3 1566 998 242 14 0 chr5 128668816 128669027 -23868232 - B3 SINE B2 -1 215 2 3 1566 955 256 45 108 chr5 128669027 128669236 -23868023 - MTD LTR MaLR -209 210 5 3 1566 1198 162 131 8 chr5 128669741 128669977 -23867282 - MTD LTR MaLR -2 417 153 3 1566 766 239 125 81 chr5 128670111 128670306 -23866953 - MTEa LTR MaLR 0 379 197 3 1566 714 24 0 0 chr5 128670306 128670390 -23866869 + (GA)n Simple_repeat Simple_repeat 2 85 0 3 1566 766 239 125 81 chr5 128670390 128670554 -23866705 - MTEa LTR MaLR -183 196 4 3 1566 1006 244 159 24 chr5 128671323 128671666 -23865593 - MTD LTR MaLR -6 373 5 3 1566 1162 233 70 18 chr5 128671646 128671930 -23865329 - ORR1E LTR MaLR -23 336 38 3 1566 316 240 0 30 chr5 128671930 128672063 -23865196 + (CATA)n Simple_repeat Simple_repeat 2 130 0 3 1566 237 108 0 0 chr5 128672966 128673003 -23864256 + (TGGGGG)n Simple_repeat Simple_repeat 1 37 0 3 1566 655 224 0 0 chr5 128673290 128673406 -23863853 + B1F SINE Alu 2 117 -32 3 1566 976 76 12 2 chr5 128673775 128673921 -23863338 - B1_Mus1 SINE Alu 0 149 1 3 1566 905 161 5 0 chr5 128674045 128674263 -23862996 + CT-rich Low_complexity Low_complexity 1 219 0 3 1566 733 272 82 0 chr5 128675164 128675359 -23861900 + B4A SINE B4 21 231 -61 3 1566 6438 32 1 0 chr5 128675398 128676145 -23861114 - L1Md_A LINE L1 0 6582 5835 3 1566 2538 27 0 105 chr5 128676146 128676546 -23860713 + L1Md_A LINE L1 1009 1366 -4517 3 1566 2534 77 12 9 chr5 128676824 128677150 -23860109 + ORR1A2 LTR MaLR 1 327 0 3 1566 450 0 0 0 chr5 128677306 128677356 -23859903 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1566 307 323 70 47 chr5 128677451 128677623 -23859636 + MLT1K LTR MaLR 390 565 -30 3 1566 589 204 171 43 chr5 128677702 128677866 -23859393 - B3A SINE B2 -11 187 3 3 1566 312 48 0 0 chr5 128678454 128678496 -23858763 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1566 462 287 99 56 chr5 128678995 128679279 -23857980 - L1MC1 LINE L1 -61 6272 5977 3 1566 812 261 62 12 chr5 128679295 128679539 -23857720 - L1MC1 LINE L1 -430 5903 5648 3 1566 1209 169 35 5 chr5 128679541 128679743 -23857516 + MTC LTR MaLR 1 208 -213 3 1566 9100 97 23 26 chr5 128679744 128681069 -23856190 + Lx3_Mus LINE L1 5666 6986 -23 3 1566 207 0 0 0 chr5 128681069 128681092 -23856167 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 3 1566 1090 142 6 40 chr5 128681092 128681300 -23855959 + MTC LTR MaLR 202 401 -18 3 1566 337 369 104 21 chr5 128683523 128683764 -23853495 - MER77 LTR ERVL -27 580 320 3 1566 662 300 46 43 chr5 128684343 128684625 -23852634 - MER77 LTR ERVL -324 283 1 3 1566 593 233 0 0 chr5 128685533 128685636 -23851623 + RSINE1 SINE B4 3 105 -60 3 1566 261 0 0 0 chr5 128685683 128685712 -23851547 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1566 280 282 0 0 chr5 128686889 128686960 -23850299 + (TATATG)n Simple_repeat Simple_repeat 6 76 0 3 1566 702 272 53 80 chr5 128686961 128687261 -23849998 - B4 SINE B4 0 292 1 3 1566 654 259 49 178 chr5 128687814 128688204 -23849055 - MTE2a LTR MaLR -35 372 1 3 1566 1688 91 136 71 chr5 128688443 128688752 -23848507 + ORR1A4 LTR MaLR 1 329 0 3 1566 2506 173 33 25 chr5 128689488 128689999 -23847260 - RLTR11A2 LTR ERVK 0 527 10 3 1566 280 309 32 0 chr5 128691078 128691172 -23846087 - MLT1A0-int LTR MaLR -1290 97 1 3 1566 1031 258 70 42 chr5 128692686 128692998 -23844261 + ORR1D2 LTR MaLR 1 321 -49 3 1566 364 314 77 60 chr5 128693112 128693463 -23843796 + ORR1E LTR MaLR 1 378 -1 3 1566 541 309 98 26 chr5 128693484 128693750 -23843509 - MLT1A0 LTR MaLR -78 287 3 3 1566 191 214 48 0 chr5 128694203 128694245 -23843014 - L2a LINE L2 -5 3421 3378 3 1566 661 199 79 22 chr5 128694372 128694511 -23842748 + B1_Mur2 SINE Alu 3 149 0 3 1566 270 353 9 0 chr5 128694583 128694699 -23842560 + (CA)n Simple_repeat Simple_repeat 2 118 0 3 1566 608 185 0 6 chr5 128694721 128694879 -23842380 + (CA)n Simple_repeat Simple_repeat 2 158 0 3 1566 356 145 97 0 chr5 128694943 128695005 -23842254 + HAL1-3A_ME LINE L1 1976 2043 -815 3 1566 244 308 86 0 chr5 128696507 128696624 -23840635 - MIR SINE MIR -96 166 40 3 1566 229 185 0 30 chr5 128696657 128696724 -23840535 + CT-rich Low_complexity Low_complexity 4 68 0 3 1566 3748 60 4 20 chr5 128696759 128697248 -23840011 + L1Md_F2 LINE L1 6095 6575 -7 3 1566 971 135 0 0 chr5 128697677 128697825 -23839434 + B1_Mus1 SINE Alu 1 148 0 3 1566 476 282 11 144 chr5 128697963 128698239 -23839020 + MTD LTR MaLR 3 212 -207 3 1566 204 273 0 0 chr5 128698241 128698307 -23838952 + GA-rich Low_complexity Low_complexity 2 67 0 3 1566 455 301 17 0 chr5 128698404 128698629 -23838630 + (TG)n Simple_repeat Simple_repeat 1 228 0 3 1566 308 289 60 53 chr5 128699905 128700055 -23837204 - L1M5 LINE L1 -711 5462 5312 3 1566 330 152 0 0 chr5 128700875 128700934 -23836325 + T-rich Low_complexity Low_complexity 3 61 0 3 1566 492 190 0 0 chr5 128700975 128701054 -23836205 + MTEa LTR MaLR 4 82 -297 3 1566 660 207 59 8 chr5 128701609 128701805 -23835454 + MTEa LTR MaLR 124 354 -5 3 1566 247 303 58 39 chr5 128702537 128702640 -23834619 + MLT2B3 LTR ERVL 1 105 -449 3 1566 1285 203 154 28 chr5 128702856 128702895 -23834364 + MTD LTR MaLR 10 44 -375 3 1566 2281 117 0 58 chr5 128702895 128703241 -23834018 + ORR1A3 LTR MaLR 1 326 0 3 1566 1285 203 154 28 chr5 128703241 128703565 -23833694 + MTD LTR MaLR 45 419 0 3 1566 185 143 48 0 chr5 128703760 128703802 -23833457 + (TCTCTG)n Simple_repeat Simple_repeat 2 45 0 3 1566 261 289 138 15 chr5 128704427 128704557 -23832702 + ORR1E LTR MaLR 208 353 -6 3 1566 263 50 48 48 chr5 128705280 128705343 -23831916 + (CAAAAA)n Simple_repeat Simple_repeat 2 64 0 3 1566 1518 157 93 10 chr5 128705549 128705735 -23831524 - ORR1C2 LTR MaLR 0 384 189 3 1566 882 29 0 0 chr5 128705735 128705840 -23831419 + (GA)n Simple_repeat Simple_repeat 2 106 0 3 1566 1518 157 93 10 chr5 128705840 128705955 -23831304 - ORR1C2 LTR MaLR -196 188 59 3 1566 646 129 49 0 chr5 128705971 128706134 -23831125 + (TG)n Simple_repeat Simple_repeat 1 171 0 3 1566 760 261 92 81 chr5 128706171 128706442 -23830817 - B4A SINE B4 -18 274 1 3 1566 322 304 7 86 chr5 128706455 128706606 -23830653 - MIR SINE MIR -75 187 49 3 1566 745 103 0 22 chr5 128706903 128706912 -23830347 + (GAAA)n Simple_repeat Simple_repeat 2 10 0 3 1566 1144 96 6 6 chr5 128706912 128707090 -23830169 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 3 1566 745 103 0 22 chr5 128707090 128707205 -23830054 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 3 1566 1032 156 0 0 chr5 128707205 128707385 -23829874 + GA-rich Low_complexity Low_complexity 1 180 0 3 1566 745 103 0 22 chr5 128707385 128707398 -23829861 + (GAAA)n Simple_repeat Simple_repeat 4 16 0 3 1566 1355 70 0 36 chr5 128707558 128707751 -23829508 + B2_Mm2 SINE B2 2 187 -8 3 1566 287 205 297 8 chr5 128708414 128708532 -23828727 + L1MA8 LINE L1 5740 5891 -400 3 1566 220 154 0 37 chr5 128708634 128708688 -23828571 + GA-rich Low_complexity Low_complexity 3 54 0 3 1566 209 33 0 32 chr5 128708717 128708748 -23828511 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 3 1566 1173 56 7 0 chr5 128708750 128708893 -23828366 - B1_Mus2 SINE Alu -2 145 2 4 1566 215 205 0 0 chr5 128709712 128709751 -23827508 + (CTCA)n Simple_repeat Simple_repeat 4 42 0 4 1566 306 0 0 0 chr5 128710845 128710879 -23826380 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1566 503 314 183 0 chr5 128711061 128711279 -23825980 + B4A SINE B4 1 258 -34 4 1566 441 0 0 0 chr5 128711311 128711360 -23825899 + (CA)n Simple_repeat Simple_repeat 2 50 0 4 1566 433 175 0 84 chr5 128711778 128711888 -23825371 + B3 SINE B2 1 94 -104 4 1566 503 309 8 72 chr5 128711888 128712125 -23825134 + Lx9 LINE L1 7299 7520 -124 4 1566 1593 122 172 0 chr5 128712133 128712412 -23824847 + ORR1A2 LTR MaLR 1 327 0 4 1566 183 129 109 6 chr5 128712414 128712570 -23824689 + (TA)n Simple_repeat Simple_repeat 1 172 0 4 195 201 116 71 14 chr5 128712659 128712729 -23824530 + (TA)n Simple_repeat Simple_repeat 2 75 0 4 1567 1136 264 49 3 chr5 128712978 128713282 -23823977 + RMER5 LTR ERV1 202 519 -15 4 1567 487 278 155 39 chr5 128713610 128713842 -23823417 + MER67C LTR ERV1 147 405 -306 4 1567 227 284 133 31 chr5 128713885 128713928 -23823331 + B1_Mur2 SINE Alu 5 60 -89 4 1567 714 245 26 31 chr5 128713928 128714122 -23823137 + B3A SINE B2 1 193 -5 4 1567 227 284 133 31 chr5 128714122 128714176 -23823083 + B1_Mur2 SINE Alu 61 111 -38 4 1567 742 232 92 16 chr5 128714286 128714470 -23822789 + RLTR24 LTR ERV1 332 529 0 4 1567 1094 102 0 13 chr5 128714656 128714805 -23822454 + B1_Mus1 SINE Alu 1 147 -1 4 1567 1389 61 0 0 chr5 128715334 128715514 -23821745 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1567 201 303 9 66 chr5 128715805 128715911 -23821348 + L2 LINE L2 2775 2874 -545 4 1567 309 100 0 0 chr5 128716217 128716267 -23820992 + (GA)n Simple_repeat Simple_repeat 2 51 0 4 1567 210 231 0 0 chr5 128716271 128716362 -23820897 + (CA)n Simple_repeat Simple_repeat 2 92 0 4 1567 318 50 0 0 chr5 128716373 128716413 -23820846 + (TC)n Simple_repeat Simple_repeat 1 40 0 4 1567 414 0 0 0 chr5 128716413 128716458 -23820801 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1567 243 0 0 0 chr5 128717008 128717035 -23820224 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 4 1567 1152 188 4 18 chr5 128717222 128717450 -23819809 + URR1B DNA MER1_type 1 225 0 4 1567 207 0 0 0 chr5 128717838 128717861 -23819398 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1567 675 272 59 6 chr5 128718023 128718193 -23819066 - ID_B1 SINE B4 -1 223 45 4 1567 777 256 40 15 chr5 128719210 128719412 -23817847 - B4 SINE B4 -4 288 82 4 1567 777 202 161 25 chr5 128719409 128719571 -23817688 - B3 SINE B2 -27 189 6 4 1567 280 287 10 21 chr5 128719576 128719672 -23817587 - B4 SINE B4 -197 95 1 4 1567 351 302 14 60 chr5 128719748 128719929 -23817330 + B3A SINE B2 25 186 -9 4 1567 196 344 74 23 chr5 128720046 128720203 -23817056 - MIRb SINE MIR -34 228 63 4 1567 457 267 50 43 chr5 128720222 128720363 -23816896 - ID_B1 SINE B4 -1 223 82 4 1567 307 349 82 24 chr5 128720501 128720671 -23816588 + ORR1E LTR MaLR 12 191 -168 4 1567 508 217 182 8 chr5 128721021 128721142 -23816117 - B1_Mur2 SINE Alu -7 142 1 4 1567 285 29 0 0 chr5 128721196 128721230 -23816029 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1567 198 0 0 0 chr5 128721230 128721251 -23816008 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1567 1656 159 34 120 chr5 128721313 128721664 -23815595 + ORR1A4 LTR MaLR 1 321 -8 4 1567 291 28 0 0 chr5 128721687 128721723 -23815536 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1567 21 0 0 0 chr5 128721755 128721776 -23815483 + AT_rich Low_complexity Low_complexity 1 21 0 4 1567 761 223 5 68 chr5 128721808 128722000 -23815259 - B3A SINE B2 -18 180 1 4 1567 2408 89 0 58 chr5 128722950 128723296 -23813963 - ORR1A3 LTR MaLR 0 326 1 4 1567 248 306 0 65 chr5 128723383 128723460 -23813799 + ID_B1 SINE B4 83 154 -70 4 1567 397 174 0 28 chr5 128723392 128723463 -23813796 + PB1D7 SINE Alu 10 78 -42 4 1567 288 250 0 0 chr5 128723470 128723550 -23813709 + GA-rich Low_complexity Low_complexity 2 81 0 4 1567 1061 249 102 4 chr5 128724163 128724429 -23812830 - B4A SINE B4 0 292 1 4 1567 3185 139 21 30 chr5 128725295 128725860 -23811399 + RLTR20B2 LTR ERVK 1 560 0 4 1567 453 19 0 0 chr5 128726413 128726467 -23810792 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1567 239 302 83 8 chr5 128727028 128727148 -23810111 - MER44B DNA MER2_type -29 521 393 4 1567 392 206 71 10 chr5 128727239 128727337 -23809922 + B1F1 SINE Alu 46 149 0 4 1567 654 339 43 12 chr5 128727423 128727680 -23809579 - MER44B DNA MER2_type -254 296 32 4 1567 376 18 54 0 chr5 128727842 128727898 -23809361 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4 1567 270 0 0 0 chr5 128727908 128727938 -23809321 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 1567 254 204 41 65 chr5 128728751 128728857 -23808402 - MLT1L LTR MaLR -147 463 331 4 1567 3093 147 116 30 chr5 128729276 128729839 -23807420 + RMER19C LTR ERVK 1 611 0 4 1567 903 289 109 15 chr5 128730101 128730368 -23806891 + B4A SINE B4 1 292 0 4 1567 295 295 112 156 chr5 128730513 128730782 -23806477 + LTR84b LTR ERVL 492 748 -13 4 1567 902 229 23 23 chr5 128730806 128731021 -23806238 + B3 SINE B2 2 216 0 4 1567 286 70 35 17 chr5 128731800 128731858 -23805401 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 4 1567 274 152 169 51 chr5 128731858 128731976 -23805283 - RMER17B LTR ERVK -499 459 328 4 1567 1060 205 75 25 chr5 128731987 128732227 -23805032 + MTD LTR MaLR 127 378 -41 4 1567 539 297 151 32 chr5 128732399 128732618 -23804641 + B4A SINE B4 2 246 -46 4 1567 423 0 0 0 chr5 128733154 128733201 -23804058 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1567 492 18 0 0 chr5 128733201 128733257 -23804002 + (CA)n Simple_repeat Simple_repeat 1 57 0 4 1567 275 286 39 13 chr5 128733694 128733772 -23803487 - ID4_ SINE ID -1 82 3 4 1567 24 32 0 0 chr5 128734045 128734076 -23803183 + AT_rich Low_complexity Low_complexity 1 31 0 4 1567 471 275 107 117 chr5 128735087 128735396 -23801863 + ORR1E LTR MaLR 8 313 -46 4 1567 221 297 11 21 chr5 128736128 128736221 -23801038 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 4 1567 799 295 14 0 chr5 128736475 128736682 -23800577 - B3 SINE B2 -5 211 2 4 1567 666 320 16 16 chr5 128737455 128737639 -23799620 + B4 SINE B4 109 292 0 4 1567 791 231 75 20 chr5 128737979 128738178 -23799081 + B3 SINE B2 1 210 -6 4 1567 2978 152 39 10 chr5 128739213 128739726 -23797533 - RLTR11A LTR ERVK 0 528 1 4 1567 331 362 87 35 chr5 128740156 128740385 -23796874 - MLT1H1 LTR MaLR -312 243 3 4 1567 434 302 154 0 chr5 128740594 128740763 -23796496 + B4A SINE B4 1 195 -97 4 1567 266 333 0 0 chr5 128740805 128740895 -23796364 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 1567 278 164 45 0 chr5 128741881 128741948 -23795311 + (CACCAT)n Simple_repeat Simple_repeat 3 72 0 4 1567 2166 97 29 10 chr5 128742032 128742343 -23794916 - ORR1A3 LTR MaLR 0 326 10 4 1567 1713 188 134 113 chr5 128743098 128743619 -23793640 + MT2A LTR ERVL 2 533 0 4 1567 335 299 227 45 chr5 128743845 128744087 -23793172 - B4 SINE B4 -2 290 5 4 1567 276 102 0 0 chr5 128744790 128744839 -23792420 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1567 1168 246 31 97 chr5 128745096 128745456 -23791803 + Lx8 LINE L1 6967 7302 -171 4 1567 570 98 0 0 chr5 128745489 128745571 -23791688 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 1567 924 131 0 21 chr5 128746080 128746220 -23791039 - B1_Mus2 SINE Alu -6 141 5 4 1567 667 181 85 63 chr5 128746223 128746412 -23790847 - B2_Mm2 SINE B2 0 195 3 4 1567 22 0 0 0 chr5 128746764 128746786 -23790473 + AT_rich Low_complexity Low_complexity 1 22 0 4 1567 307 289 136 30 chr5 128746914 128747046 -23790213 + HAL1-3A_ME LINE L1 2292 2437 -421 4 1567 215 231 0 0 chr5 128747046 128747085 -23790174 + (CAGA)n Simple_repeat Simple_repeat 1 39 0 4 1567 764 204 88 0 chr5 128747230 128747377 -23789882 + B3A SINE B2 1 160 -38 4 1567 204 182 45 0 chr5 128747377 128747421 -23789838 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1567 345 100 0 0 chr5 128747427 128747477 -23789782 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1567 315 0 0 0 chr5 128747477 128747511 -23789748 + (GA)n Simple_repeat Simple_repeat 2 36 0 4 1567 777 251 5 68 chr5 128748183 128748375 -23788884 + B3A SINE B2 7 186 -12 4 1567 822 328 8 45 chr5 128748397 128748662 -23788597 + B4 SINE B4 2 256 -36 4 1567 243 0 0 0 chr5 128748686 128748713 -23788546 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1567 944 259 127 15 chr5 128750009 128750268 -23786991 + B4A SINE B4 5 292 0 4 1567 976 104 15 0 chr5 128750439 128750573 -23786686 + B1_Mur3 SINE Alu 1 136 -13 4 1567 339 318 200 17 chr5 128750611 128750835 -23786424 + RMER15 LTR ERVL 296 560 -15 4 1567 658 276 42 11 chr5 128750995 128751207 -23786052 + Lx6 LINE L1 7109 7302 -158 4 1567 450 309 109 23 chr5 128752151 128752416 -23784843 + B4A SINE B4 5 292 0 4 1567 1229 210 65 101 chr5 128752502 128752857 -23784402 + MTEb LTR MaLR 18 359 -20 4 1567 195 281 0 17 chr5 128753295 128753353 -23783906 + L2a LINE L2 3370 3426 0 4 1567 1450 201 133 9 chr5 128754057 128754379 -23782880 - MTD LTR MaLR -57 362 1 4 1567 230 237 17 0 chr5 128754407 128754466 -23782793 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1567 609 365 22 15 chr5 128754488 128754755 -23782504 - B4A SINE B4 -23 269 1 5 1567 261 337 0 11 chr5 128754755 128754842 -23782417 + CT-rich Low_complexity Low_complexity 4 89 0 5 1567 1042 221 101 92 chr5 128755851 128755997 -23781262 - MTD LTR MaLR -88 331 168 5 1567 2415 98 12 9 chr5 128755997 128756338 -23780921 - ORR1A1 LTR MaLR -1 345 4 5 1567 1042 221 101 92 chr5 128756338 128756519 -23780740 - MTD LTR MaLR -252 167 1 5 1567 284 314 79 0 chr5 128757176 128757284 -23779975 - MIRb SINE MIR -101 175 59 5 1567 193 167 37 0 chr5 128757432 128757486 -23779773 + (CA)n Simple_repeat Simple_repeat 1 56 0 5 1567 299 219 15 61 chr5 128757535 128757666 -23779593 + (CA)n Simple_repeat Simple_repeat 1 125 0 5 1567 180 137 59 0 chr5 128757684 128757735 -23779524 + (CA)n Simple_repeat Simple_repeat 1 54 0 5 1567 291 297 45 129 chr5 128758559 128758737 -23778522 - B4 SINE B4 -128 164 2 5 1567 355 202 25 25 chr5 128759043 128759124 -23778135 + ID4_ SINE ID 1 81 -2 5 1567 207 0 0 0 chr5 128759284 128759307 -23777952 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1567 607 325 107 3 chr5 128759732 128760041 -23777218 + RMER5 LTR ERV1 98 438 -96 5 1567 707 156 93 8 chr5 128760071 128760200 -23777059 - B1_Mur4 SINE Alu 0 150 11 5 1567 1306 234 168 6 chr5 128760207 128760547 -23776712 - MTD LTR MaLR -24 395 1 5 1567 422 267 16 70 chr5 128760547 128760633 -23776626 + RMER5 LTR ERV1 442 520 -14 5 1567 376 258 30 30 chr5 128761325 128761425 -23775834 - PB1D10 SINE Alu -5 112 13 5 1567 477 209 131 16 chr5 128761973 128762133 -23775126 + MTD LTR MaLR 1 170 -249 5 1567 1283 176 9 18 chr5 128762139 128762359 -23774900 + URR1A DNA MER1_type 8 225 -1 5 1567 352 301 19 10 chr5 128762417 128762521 -23774738 + MTD LTR MaLR 242 346 -33 5 1567 1667 212 33 25 chr5 128762829 128763196 -23774063 + ORR1D2 LTR MaLR 1 370 0 5 1567 508 328 73 89 chr5 128763719 128764090 -23773169 + ORR1D2 LTR MaLR 6 370 0 5 1567 225 194 0 0 chr5 128764557 128764593 -23772666 - U2 snRNA snRNA -152 36 1 5 1567 672 48 0 0 chr5 128765125 128765209 -23772050 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 1567 521 261 80 65 chr5 128765219 128765420 -23771839 - ID_B1 SINE B4 -19 205 2 5 1567 342 326 54 58 chr5 128765625 128765830 -23771429 + MIR SINE MIR 42 245 -23 5 1567 392 333 7 0 chr5 128766086 128766224 -23771035 + (CACG)n Simple_repeat Simple_repeat 3 141 0 5 1567 321 26 0 0 chr5 128766285 128766323 -23770936 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 5 1567 850 202 78 11 chr5 128767494 128767674 -23769585 - URR1A DNA MER1_type 0 226 35 5 1567 236 279 14 29 chr5 128768506 128768576 -23768683 - RMER30 DNA MER1_type -1 201 133 5 1567 253 291 37 37 chr5 128768514 128768596 -23768663 + Charlie12 DNA MER1_type 9 90 -2783 5 1567 1330 142 286 62 chr5 128768630 128769004 -23768255 - RMER6B LTR ERVK -3 458 1 5 1567 205 167 0 0 chr5 128769052 128769088 -23768171 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1567 1213 129 99 0 chr5 128769192 128769394 -23767865 - URR1A DNA MER1_type 0 226 5 5 1567 455 180 58 29 chr5 128769910 128770013 -23767246 + ID_B1 SINE B4 99 204 -20 5 1567 204 229 12 24 chr5 128770077 128770162 -23767097 + CT-rich Low_complexity Low_complexity 3 86 0 5 1567 218 373 40 45 chr5 128771000 128771177 -23766082 - L2 LINE L2 -652 2767 2592 5 1567 657 244 13 13 chr5 128771265 128771423 -23765836 + RSINE1 SINE B4 3 160 -5 5 1567 474 18 0 0 chr5 128771446 128771501 -23765758 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1567 477 285 151 72 chr5 128772184 128772502 -23764757 + ORR1E LTR MaLR 2 344 -15 5 1567 590 256 101 29 chr5 128772720 128772934 -23764325 + B3A SINE B2 1 216 0 5 1567 360 0 0 0 chr5 128773475 128773515 -23763744 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1567 795 275 26 0 chr5 128773774 128773948 -23763311 + B3A SINE B2 1 179 -19 5 1567 417 39 0 0 chr5 128773948 128773999 -23763260 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1567 795 275 26 0 chr5 128773999 128774013 -23763246 + B3A SINE B2 180 193 -5 5 1567 1524 222 66 30 chr5 128774599 128774933 -23762326 + MTEa LTR MaLR 34 379 0 5 1567 207 0 0 0 chr5 128775377 128775400 -23761859 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1567 463 237 10 0 chr5 128775719 128775814 -23761445 + B4A SINE B4 15 110 -182 5 1567 1164 251 96 83 chr5 128775814 128776188 -23761071 - MTE2a LTR MaLR 0 379 1 5 1567 3946 175 17 16 chr5 128776224 128776914 -23760345 + RLTR17 LTR ERVK 2 692 0 5 1567 540 235 61 75 chr5 128776940 128777087 -23760172 + B4A SINE B4 124 268 -24 5 1567 432 37 0 0 chr5 128777088 128777142 -23760117 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1567 1252 228 206 6 chr5 128777611 128777960 -23759299 - MTD LTR MaLR 0 419 1 5 1567 261 258 32 0 chr5 128778705 128778829 -23758430 + GA-rich Low_complexity Low_complexity 3 130 0 5 1567 836 133 0 36 chr5 128780536 128780676 -23756583 - URR1A DNA MER1_type -15 211 77 5 1567 280 232 34 79 chr5 128780936 128781025 -23756234 + B4A SINE B4 41 125 -167 5 1567 187 274 0 30 chr5 128781064 128781196 -23756063 + (CATATA)n Simple_repeat Simple_repeat 6 133 0 5 1567 414 0 0 0 chr5 128781196 128781242 -23756017 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 5 1567 524 203 6 33 chr5 128781243 128781426 -23755833 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 5 1567 442 216 5 43 chr5 128781385 128781569 -23755690 + (CATA)n Simple_repeat Simple_repeat 2 178 0 5 1567 313 188 0 0 chr5 128783099 128783147 -23754112 + ID SINE ID 5 52 -172 5 1567 266 292 77 22 chr5 128783100 128783191 -23754068 + BC1_Mm scRNA scRNA 6 101 -51 5 1567 606 199 11 80 chr5 128783191 128783453 -23753806 - RMER17C LTR ERVK -166 244 1 5 1567 480 273 82 54 chr5 128783453 128783598 -23753661 + ID_B1 SINE B4 64 212 -12 5 1567 414 0 0 0 chr5 128783600 128783646 -23753613 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1567 501 17 0 0 chr5 128783972 128784030 -23753229 + (GGGA)n Simple_repeat Simple_repeat 1 58 0 5 1567 199 205 0 0 chr5 128784153 128784192 -23753067 + MIR SINE MIR 115 153 -109 5 1567 262 276 0 0 chr5 128784316 128784374 -23752885 - B4A SINE B4 -233 59 2 5 1567 275 295 18 79 chr5 128784395 128784447 -23752812 - B4A SINE B4 -92 200 94 5 1567 332 161 81 0 chr5 128784447 128784509 -23752750 - PB1D7 SINE Alu -45 75 9 5 1567 561 245 43 12 chr5 128784901 128785056 -23752203 - MTD LTR MaLR 0 419 260 5 1567 868 131 200 0 chr5 128785056 128785216 -23752043 + URR1A DNA MER1_type 1 192 -34 5 1567 501 300 35 55 chr5 128785202 128785403 -23751856 - MTD LTR MaLR -149 270 74 5 1567 940 160 118 6 chr5 128785703 128785873 -23751386 - MTEa LTR MaLR -160 219 31 5 1567 377 257 250 0 chr5 128785873 128786025 -23751234 + B3A SINE B2 1 190 -8 5 1567 233 379 88 12 chr5 128787058 128787229 -23750030 - L2 LINE L2 -597 2822 2639 5 1567 207 304 18 42 chr5 128787682 128787850 -23749409 + (TCTCTG)n Simple_repeat Simple_repeat 5 168 0 5 1567 247 330 29 67 chr5 128789246 128789350 -23747909 + RMER15 LTR ERVL 32 131 -444 5 1567 513 282 28 14 chr5 128789381 128789525 -23747734 + RMER15 LTR ERVL 276 421 -154 5 1567 1120 278 67 20 chr5 128790543 128790884 -23746375 + ORR1E LTR MaLR 1 357 -2 5 1567 280 254 15 0 chr5 128791064 128791131 -23746128 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 5 1567 4560 62 14 10 chr5 128791182 128791764 -23745495 + MT2B2 LTR ERVL 1 584 0 5 1567 528 193 0 0 chr5 128792748 128792867 -23744392 + (TGGA)n Simple_repeat Simple_repeat 1 119 0 5 1567 234 219 0 0 chr5 128792936 128793000 -23744259 + (TGGA)n Simple_repeat Simple_repeat 4 67 0 5 1567 801 230 15 148 chr5 128794262 128794500 -23742759 + B4A SINE B4 5 229 -63 5 1567 736 225 0 7 chr5 128794500 128794643 -23742616 + B1_Mur1 SINE Alu 1 142 -7 5 1567 801 230 15 148 chr5 128794643 128794736 -23742523 + B4A SINE B4 230 292 0 5 1567 514 347 60 0 chr5 128794838 128795086 -23742173 + MER2 DNA MER2_type 81 343 -2 5 1567 486 269 4 0 chr5 128795499 128795746 -23741513 + (TGGG)n Simple_repeat Simple_repeat 1 248 0 5 1567 507 264 0 0 chr5 128795761 128795939 -23741320 + (TGGG)n Simple_repeat Simple_repeat 3 180 0 5 1567 540 302 3 0 chr5 128795989 128796305 -23740954 + (TGGG)n Simple_repeat Simple_repeat 1 317 0 5 1567 255 389 75 78 chr5 128796651 128796741 -23740518 - B4 SINE B4 0 292 1 5 1567 686 320 5 44 chr5 128796741 128796944 -23740315 - B3A SINE B2 -3 195 1 5 1567 568 252 107 0 chr5 128796951 128797082 -23740177 - B4A SINE B4 -64 228 84 5 1567 245 320 31 0 chr5 128797256 128797353 -23739906 + LTR37B LTR ERV1 5 104 -364 5 1567 32 0 0 0 chr5 128797402 128797434 -23739825 + GC_rich Low_complexity Low_complexity 1 32 0 5 1567 224 281 15 30 chr5 128798408 128798474 -23738785 - PB1D10 SINE Alu -1 116 52 5 1567 378 0 0 0 chr5 128798592 128798634 -23738625 + (CCA)n Simple_repeat Simple_repeat 3 44 0 5 1567 493 233 23 8 chr5 128799489 128799619 -23737640 + L2 LINE L2 2310 2441 -978 5 1567 1270 242 3 34 chr5 128800120 128800415 -23736844 + B4 SINE B4 3 288 -4 5 1567 225 161 16 31 chr5 128800618 128800682 -23736577 + (TTTG)n Simple_repeat Simple_repeat 1 63 0 5 1567 890 223 5 63 chr5 128801204 128801410 -23735849 + B3A SINE B2 4 197 -1 5 1567 730 294 9 9 chr5 128801999 128802215 -23735044 + B3 SINE B2 1 216 0 5 1567 1747 220 13 27 chr5 128802476 128802850 -23734409 + MTEb LTR MaLR 3 371 -8 5 1567 672 236 21 7 chr5 128802858 128802999 -23734260 + B3A SINE B2 3 145 -53 5 1567 1303 75 17 6 chr5 128803064 128803239 -23734020 - B2_Mm1t SINE B2 -14 179 3 5 1567 369 187 0 0 chr5 128803855 128803930 -23733329 + CT-rich Low_complexity Low_complexity 2 76 0 5 1567 33543 70 14 3 chr5 128803979 128808989 -23728270 + L1Md_F2 LINE L1 515 5586 -297 5 1567 8214 50 0 5 chr5 128808989 128809989 -23727270 + L1Md_F2 LINE L1 5587 6581 -1 5 1567 2255 69 8 91 chr5 128810549 128810675 -23726584 + ORR1A2 LTR MaLR 1 101 -226 5 1567 2888 91 15 8 chr5 128810675 128811075 -23726184 - RLTR9D LTR ERVK 0 403 1 5 1567 2255 69 8 91 chr5 128811075 128811300 -23725959 + ORR1A2 LTR MaLR 102 323 -4 5 1567 233 208 132 0 chr5 128811670 128811723 -23725536 - PB1D10 SINE Alu -34 83 24 5 1567 270 0 0 0 chr5 128811746 128811776 -23725483 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1567 1859 182 8 65 chr5 128811778 128812165 -23725094 + ORR1D1 LTR MaLR 2 366 -8 5 1567 492 223 0 41 chr5 128812191 128812289 -23724970 - B4 SINE B4 -51 241 148 6 1567 1298 169 5 16 chr5 128812284 128812564 -23724695 - ZP3AR Satellite Satellite -2 276 1 6 1567 283 320 27 0 chr5 128812579 128812654 -23724605 - PB1D10 SINE Alu -37 80 4 6 1567 198 71 0 0 chr5 128813414 128813442 -23723817 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1567 309 285 40 53 chr5 128813442 128813594 -23723665 + (CATG)n Simple_repeat Simple_repeat 3 152 0 6 1567 902 287 55 48 chr5 128813604 128813893 -23723366 - B4 SINE B4 0 292 2 6 1567 234 0 0 0 chr5 128813984 128814010 -23723249 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1567 791 289 52 34 chr5 128815720 128815989 -23721270 - B4A SINE B4 -5 287 14 6 1567 378 0 0 0 chr5 128816101 128816143 -23721116 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1567 216 0 0 0 chr5 128816418 128816442 -23720817 + (GA)n Simple_repeat Simple_repeat 2 25 0 6 1567 1071 244 9 0 chr5 128816540 128816757 -23720502 + ID_B1 SINE B4 2 220 -4 6 1567 241 377 66 0 chr5 128817686 128817808 -23719451 - L2b LINE L2 -271 3104 2975 6 1567 307 329 133 16 chr5 128817910 128818176 -23719083 + L1MA5 LINE L1 5574 5872 -317 6 1567 443 126 0 10 chr5 128818860 128818956 -23718303 + (GA)n Simple_repeat Simple_repeat 1 95 0 6 1567 766 210 42 0 chr5 128818969 128819112 -23718147 - B3 SINE B2 -67 149 1 6 1567 192 260 0 20 chr5 128819638 128819689 -23717570 + MIR SINE MIR 124 173 -89 6 1567 1784 199 15 71 chr5 128819726 128819909 -23717350 + MTEb LTR MaLR 4 185 -194 6 1567 571 205 117 8 chr5 128819909 128820037 -23717222 + B1_Mur2 SINE Alu 5 146 -3 6 1567 1784 199 15 71 chr5 128820037 128820248 -23717011 + MTEb LTR MaLR 186 376 -3 6 1567 245 194 105 53 chr5 128820330 128820406 -23716853 + YREP_Mm Unknown Unknown 158 237 -1575 6 1567 416 227 22 22 chr5 128820347 128820437 -23716822 - ID_B1 SINE B4 -4 220 131 6 1567 637 268 7 0 chr5 128820851 128820989 -23716270 + B4A SINE B4 2 140 -152 6 1567 722 307 50 0 chr5 128820982 128821184 -23716075 + B4 SINE B4 81 292 0 6 1567 1322 112 5 0 chr5 128821275 128821462 -23715797 - B2_Mm1t SINE B2 -5 188 1 6 1567 1268 144 171 31 chr5 128822661 128822919 -23714340 + MTB_Mm LTR MaLR 1 294 -113 6 1567 630 180 41 15 chr5 128823056 128823200 -23714059 + MTD LTR MaLR 190 418 -1 6 1567 747 231 17 29 chr5 128823236 128823425 -23713834 - B3 SINE B2 0 198 16 6 1567 357 274 51 39 chr5 128823562 128823683 -23713576 - PB1D9 SINE Alu -23 126 1 6 1567 703 316 62 85 chr5 128823915 128824268 -23712991 - Tigger7 DNA MER2_type -2146 345 1 6 1567 303 93 0 0 chr5 128824558 128824601 -23712658 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 6 1567 1110 176 13 39 chr5 128824791 128825022 -23712237 - URR1B DNA MER1_type 0 225 1 6 1567 268 319 101 78 chr5 128825285 128825414 -23711845 + B4 SINE B4 67 198 -94 6 1567 477 209 84 19 chr5 128825325 128825432 -23711827 + B1_Mur1 SINE Alu 13 126 -23 6 1567 308 299 0 78 chr5 128825439 128825555 -23711704 + L1MCa LINE L1 1890 1996 -4512 6 1567 4545 156 72 28 chr5 128825588 128826452 -23710807 - RMER19B LTR ERVK 0 902 1 6 1567 222 37 0 0 chr5 128827312 128827339 -23709920 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 6 1567 232 267 0 39 chr5 128827471 128827549 -23709710 + CT-rich Low_complexity Low_complexity 2 76 0 6 1567 251 54 27 0 chr5 128828469 128828506 -23708753 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 6 1567 1008 135 0 20 chr5 128828510 128828661 -23708598 - B1_Mur3 SINE Alu 0 149 2 6 1567 497 223 48 0 chr5 128829673 128829776 -23707483 - B3 SINE B2 -108 108 1 6 1567 477 0 0 0 chr5 128830498 128830551 -23706708 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1567 441 0 0 0 chr5 128830551 128830599 -23706660 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1567 264 372 14 35 chr5 128830840 128830982 -23706277 + ID_B1 SINE B4 2 140 -84 6 1567 25 0 0 0 chr5 128831018 128831043 -23706216 + AT_rich Low_complexity Low_complexity 1 25 0 6 1567 576 224 102 17 chr5 128831622 128831740 -23705519 + RSINE1 SINE B4 3 130 -35 6 1567 297 0 0 0 chr5 128831753 128831786 -23705473 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 6 1567 1018 212 26 0 chr5 128832884 128833077 -23704182 + B4 SINE B4 22 219 -73 6 1567 1347 100 0 0 chr5 128833083 128833374 -23703885 + (GGAA)n Simple_repeat Simple_repeat 1 291 0 6 1567 246 156 0 0 chr5 128833500 128833545 -23703714 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1567 230 321 87 26 chr5 128833697 128833812 -23703447 + MIR SINE MIR 23 144 -118 6 1567 1471 250 41 29 chr5 128833893 128834235 -23703024 - ORR1E LTR MaLR -4 355 10 6 1567 676 236 79 35 chr5 128834609 128834811 -23702448 + B3 SINE B2 3 213 -3 6 1567 662 331 93 23 chr5 128835422 128835679 -23701580 + B4A SINE B4 10 284 -8 6 1567 552 30 0 0 chr5 128835715 128835781 -23701478 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1567 995 217 38 10 chr5 128835938 128836147 -23701112 - B3 SINE B2 0 216 2 6 1567 319 264 17 43 chr5 128836155 128836270 -23700989 - PB1D10 SINE Alu -1 116 5 6 1567 1233 155 22 48 chr5 128836415 128836646 -23700613 + URR1B DNA MER1_type 1 225 0 6 1567 447 247 0 53 chr5 128837773 128837840 -23699419 + B4 SINE B4 1 67 -225 6 1567 2319 141 64 11 chr5 128837840 128838214 -23699045 + ORR1B1 LTR MaLR 1 394 0 6 1567 447 282 786 12 chr5 128838214 128838332 -23698927 + B4 SINE B4 68 274 -18 6 1567 519 45 0 0 chr5 128838343 128838409 -23698850 + (CA)n Simple_repeat Simple_repeat 2 67 0 6 1567 768 242 76 0 chr5 128838824 128839022 -23698237 - ID_B1 SINE B4 -10 214 2 6 1567 1072 285 25 96 chr5 128839633 128840071 -23697188 - MTD LTR MaLR 0 419 13 6 1567 212 244 0 0 chr5 128840846 128840887 -23696372 + polypurine Low_complexity Low_complexity 1 41 0 6 1567 227 204 14 50 chr5 128840959 128841098 -23696161 + GA-rich Low_complexity Low_complexity 4 137 0 6 1567 214 133 22 22 chr5 128841222 128841268 -23695991 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 6 1567 222 118 0 0 chr5 128842261 128842295 -23694964 + (CTTA)n Simple_repeat Simple_repeat 2 35 0 6 1567 334 256 43 43 chr5 128842300 128842394 -23694865 - PB1D10 SINE Alu -10 107 14 6 1567 543 292 36 15 chr5 128842496 128842691 -23694568 + B3 SINE B2 3 201 -15 6 1567 756 86 0 0 chr5 128842863 128842968 -23694291 + (TAGA)n Simple_repeat Simple_repeat 1 105 0 6 1568 311 167 67 0 chr5 128844460 128844520 -23692739 - HAL1-3A_ME LINE L1 -819 2039 1976 6 1568 672 298 53 32 chr5 128844567 128844851 -23692408 - B4 SINE B4 -2 290 1 6 1568 528 45 0 0 chr5 128845995 128846062 -23691197 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1568 987 256 21 4 chr5 128846090 128846325 -23690934 - B4 SINE B4 -53 239 1 6 1568 479 67 0 3 chr5 128847187 128847253 -23690006 - ORR1A4 LTR MaLR -13 357 263 6 1568 1861 129 130 19 chr5 128847303 128847627 -23689632 + ORR1C2 LTR MaLR 24 383 -1 6 1568 2400 192 41 117 chr5 128847934 128848595 -23688664 - RMER19C LTR ERVK 0 611 1 6 1568 817 285 4 89 chr5 128849337 128849572 -23687687 - B4 SINE B4 -77 215 1 6 1568 707 183 129 41 chr5 128849646 128849817 -23687442 + B3 SINE B2 2 187 -29 6 1568 267 152 0 0 chr5 128849817 128849863 -23687396 + (TAG)n Simple_repeat Simple_repeat 3 48 0 6 1568 746 281 96 36 chr5 128850811 128851062 -23686197 - MTE2b LTR MaLR -8 371 106 6 1568 1101 320 36 69 chr5 128851149 128851322 -23685937 + Lx9 LINE L1 6972 7121 -523 6 1568 1573 33 6 0 chr5 128851322 128851502 -23685757 + B2_Mm1t SINE B2 1 181 -12 6 1568 396 40 0 0 chr5 128851502 128851552 -23685707 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 6 1568 1101 320 36 69 chr5 128851552 128851898 -23685361 + Lx9 LINE L1 7122 7474 -170 6 1568 297 302 33 49 chr5 128851914 128852036 -23685223 - MTE2b LTR MaLR -258 121 2 6 1568 267 224 0 56 chr5 128852516 128852587 -23684672 + RMER5 LTR ERV1 47 113 -421 6 1568 1548 216 97 29 chr5 128852624 128853005 -23684254 + MTD LTR MaLR 13 419 0 6 1568 970 256 85 16 chr5 128853005 128853311 -23683948 + RMER5 LTR ERV1 168 494 -40 6 1568 927 151 0 0 chr5 128853312 128853451 -23683808 + B1_Mus1 SINE Alu 2 140 -8 6 1568 1122 90 17 6 chr5 128853472 128853650 -23683609 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 6 1568 854 126 8 42 chr5 128853782 128854030 -23683229 + (TAGA)n Simple_repeat Simple_repeat 1 239 0 6 1568 369 0 0 0 chr5 128854039 128854080 -23683179 + (CATA)n Simple_repeat Simple_repeat 1 41 0 6 1568 460 45 0 29 chr5 128854387 128854456 -23682803 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 6 1568 673 252 46 63 chr5 128854557 128854794 -23682465 - MLT2C1 LTR ERVL -108 289 57 6 1568 399 206 39 0 chr5 128855370 128855525 -23681734 + (TAGA)n Simple_repeat Simple_repeat 4 164 0 6 1568 633 176 112 0 chr5 128855525 128855650 -23681609 + URR1A DNA MER1_type 67 205 -21 6 1568 1833 170 196 16 chr5 128855663 128856111 -23681148 - MT2A LTR ERVL 0 533 5 6 1568 588 263 22 54 chr5 128856131 128856316 -23680943 + HAL1-2a_MD LINE L1 2347 2525 -499 6 1568 774 107 11 40 chr5 128856322 128856497 -23680762 + CT-rich Low_complexity Low_complexity 3 172 0 6 1568 289 326 15 22 chr5 128856512 128856647 -23680612 + (CACCAT)n Simple_repeat Simple_repeat 3 136 0 6 1568 460 270 9 9 chr5 128857067 128857179 -23680080 + PB1D7 SINE Alu 1 112 -8 6 1568 305 140 18 0 chr5 128857439 128857496 -23679763 + GA-rich Low_complexity Low_complexity 2 59 0 6 1568 1163 36 12 29 chr5 128857501 128857672 -23679587 + (GGAAA)n Simple_repeat Simple_repeat 4 171 0 6 1568 364 241 96 0 chr5 128857677 128857760 -23679499 + RMER30 DNA MER1_type 110 200 -2 6 1568 807 203 26 62 chr5 128857806 128857836 -23679423 - B3A SINE B2 -10 188 168 7 1568 198 0 0 0 chr5 128857836 128857858 -23679401 + (TG)n Simple_repeat Simple_repeat 1 22 0 7 1568 234 0 0 0 chr5 128857858 128857883 -23679376 + (CG)n Simple_repeat Simple_repeat 2 27 0 7 1568 807 203 26 62 chr5 128857883 128858045 -23679214 - B3A SINE B2 -31 167 3 7 1568 213 294 166 11 chr5 128858430 128858558 -23678701 - MIR SINE MIR -62 200 64 7 1568 302 276 26 13 chr5 128858732 128858809 -23678450 - MTEb LTR MaLR -55 324 247 7 1568 2201 143 90 8 chr5 128858810 128859207 -23678052 - ORR1B1 LTR MaLR -8 386 1 7 1568 465 283 35 10 chr5 128859560 128859723 -23677536 - B3 SINE B2 0 216 48 7 1568 2151 133 11 14 chr5 128859732 128860084 -23677175 - ORR1B1 LTR MaLR -3 391 41 7 1568 1496 226 0 3 chr5 128860259 128860547 -23676712 + B4 SINE B4 2 288 -4 7 1568 353 293 19 66 chr5 128861236 128861342 -23675917 + PB1D10 SINE Alu 9 109 -8 7 1568 519 122 0 0 chr5 128861345 128861435 -23675824 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 7 1568 1073 253 63 97 chr5 128861544 128861925 -23675334 + MTE2a LTR MaLR 1 368 -11 7 1568 2068 210 50 74 chr5 128861953 128862439 -23674820 + RLTR20B3 LTR ERVK 22 483 -94 7 1568 288 0 0 0 chr5 128862439 128862471 -23674788 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1568 2068 210 50 74 chr5 128862471 128862540 -23674719 + RLTR20B3 LTR ERVK 484 563 -14 7 1568 351 260 112 16 chr5 128862915 128863040 -23674219 - RMER15 LTR ERVL -92 483 347 7 1568 653 287 124 105 chr5 128863346 128863716 -23673543 + MTEa LTR MaLR 3 379 0 7 1568 1978 129 145 40 chr5 128865128 128865397 -23671862 - MTC LTR MaLR 0 421 105 7 1568 1342 74 25 45 chr5 128865397 128865559 -23671700 + B2_Mm2 SINE B2 1 160 -35 7 1568 225 0 0 0 chr5 128865559 128865584 -23671675 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 7 1568 1342 74 25 45 chr5 128865584 128865619 -23671640 + B2_Mm2 SINE B2 161 194 -1 7 1568 1978 129 145 40 chr5 128865619 128865728 -23671531 - MTC LTR MaLR -317 104 3 7 1568 690 165 29 50 chr5 128865891 128866031 -23671228 - B1_Mur4 SINE Alu -12 138 2 7 1568 333 109 0 0 chr5 128866355 128866410 -23670849 + (GTTTG)n Simple_repeat Simple_repeat 1 55 0 7 1568 1123 134 115 29 chr5 128866943 128867151 -23670108 + URR1A DNA MER1_type 1 226 0 7 1568 449 255 41 0 chr5 128867222 128867320 -23669939 + B4 SINE B4 2 103 -189 7 1568 563 217 139 0 chr5 128867336 128867465 -23669794 + B3 SINE B2 70 216 0 7 1568 602 330 70 35 chr5 128868355 128868697 -23668562 - L1MA4A LINE L1 -347 5956 5603 7 1568 1170 182 14 19 chr5 128868775 128868988 -23668271 - B3 SINE B2 -4 212 1 7 1568 468 281 66 25 chr5 128868997 128869194 -23668065 - L1_Mur3 LINE L1 -336 5544 5340 7 1568 342 0 0 0 chr5 128869207 128869245 -23668014 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1568 1370 227 99 3 chr5 128869613 128869958 -23667301 + MTE2b LTR MaLR 1 378 -1 7 1568 185 119 0 23 chr5 128877799 128877842 -23659417 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 7 1568 1125 207 39 0 chr5 128877842 128878045 -23659214 - ID_B1 SINE B4 0 224 14 7 1568 546 247 43 89 chr5 128878279 128878489 -23658770 + B4A SINE B4 1 205 -87 7 1568 518 219 50 58 chr5 128878381 128878502 -23658757 + B1_Mur1 SINE Alu 7 126 -23 7 1568 319 263 147 0 chr5 128878506 128878601 -23658658 + B4A SINE B4 122 230 -62 7 1568 1148 56 0 0 chr5 128878602 128878744 -23658515 + B2_Mm2 SINE B2 2 143 -52 7 1568 627 207 0 0 chr5 128878845 128878980 -23658279 + GA-rich Low_complexity Low_complexity 1 135 0 7 1568 299 289 0 0 chr5 128878980 128879056 -23658203 + B4A SINE B4 217 292 0 7 1568 246 247 214 58 chr5 128879459 128879562 -23657697 - L2b LINE L2 -31 3344 3226 7 1568 1337 283 51 28 chr5 128879665 128880094 -23657165 + BGLII_B LTR ERVK 1 439 -2 7 1568 351 0 0 0 chr5 128880361 128880400 -23656859 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1568 298 379 77 6 chr5 128880429 128880612 -23656647 - MER68 LTR ERVL -314 249 54 7 1568 2323 106 12 42 chr5 128880721 128881089 -23656170 + ORR1A3 LTR MaLR 1 346 -13 7 1568 180 359 37 37 chr5 128881097 128881178 -23656081 + MIRb SINE MIR 106 186 -82 7 1568 354 45 0 0 chr5 128881321 128881365 -23655894 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 7 1568 582 226 274 32 chr5 128881536 128881755 -23655504 + B4 SINE B4 8 279 -13 7 1568 252 271 128 65 chr5 128882075 128882210 -23655049 + MLT1A0 LTR MaLR 91 230 -144 7 1568 702 280 0 39 chr5 128883655 128883811 -23653448 + RSINE1 SINE B4 7 156 -9 7 1568 396 0 0 0 chr5 128883811 128883855 -23653404 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 7 1568 1261 199 123 28 chr5 128884180 128884505 -23652754 + ORR1E LTR MaLR 4 359 0 7 1568 946 274 109 9 chr5 128884881 128885202 -23652057 + ORR1E LTR MaLR 1 353 -6 7 1568 254 218 145 7 chr5 128885380 128885499 -23651760 - MIRm SINE MIR -49 159 34 7 1568 308 238 68 6 chr5 128887446 128887532 -23649727 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 7 1568 808 112 88 0 chr5 128887532 128887657 -23649602 + B1_Mus1 SINE Alu 1 136 -12 7 1568 180 0 0 0 chr5 128887657 128887677 -23649582 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 7 1568 308 238 68 6 chr5 128887677 128887750 -23649509 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 7 1568 432 219 193 66 chr5 128888649 128888815 -23648444 - RMER30 DNA MER1_type -10 192 6 7 1568 763 320 47 0 chr5 128889656 128889931 -23647328 - B4 SINE B4 -2 290 3 7 1568 243 306 69 46 chr5 128890767 128890897 -23646362 + RMER15 LTR ERVL 1 133 -442 7 1568 620 271 31 67 chr5 128890921 128891115 -23646144 + RMER15 LTR ERVL 261 447 -128 7 1568 601 253 29 40 chr5 128891176 128891349 -23645910 + RMER15 LTR ERVL 405 575 0 7 1568 333 155 0 0 chr5 128892101 128892159 -23645100 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1568 183 100 0 0 chr5 128892796 128892826 -23644433 + (CTCA)n Simple_repeat Simple_repeat 2 31 0 7 1568 344 295 143 0 chr5 128892851 128892963 -23644296 - B3 SINE B2 -12 204 77 7 1568 294 29 0 0 chr5 128893212 128893247 -23644012 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 7 1568 1049 176 121 0 chr5 128893342 128893541 -23643718 + URR1A DNA MER1_type 1 223 -3 7 1568 184 213 16 16 chr5 128893652 128893714 -23643545 + GA-rich Low_complexity Low_complexity 4 65 0 7 1568 204 40 0 0 chr5 128894577 128894602 -23642657 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 7 1568 377 204 32 21 chr5 128894710 128894805 -23642454 + B1F SINE Alu 48 143 -6 7 1568 204 143 0 28 chr5 128895135 128895171 -23642088 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 7 1568 1065 233 10 0 chr5 128895259 128895465 -23641794 - B3 SINE B2 0 216 9 7 1568 1055 248 38 107 chr5 128896773 128897138 -23640121 - MTE2a LTR MaLR 0 379 40 7 1568 495 290 18 57 chr5 128897139 128897457 -23639802 + MTEa LTR MaLR 86 379 0 7 1568 246 32 0 0 chr5 128897530 128897561 -23639698 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 7 1568 210 147 0 0 chr5 128897564 128897598 -23639661 + (TCTCCC)n Simple_repeat Simple_repeat 3 36 0 7 1568 771 204 66 25 chr5 128897930 128898135 -23639124 + B3A SINE B2 1 192 -3 7 1568 305 176 12 42 chr5 128898230 128898396 -23638863 + (TA)n Simple_repeat Simple_repeat 2 162 0 7 1568 210 290 0 0 chr5 128898948 128899041 -23638218 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 7 1568 434 216 6 0 chr5 128899024 128899195 -23638064 + (TG)n Simple_repeat Simple_repeat 1 172 0 7 1568 1169 234 34 41 chr5 128899195 128899489 -23637770 - B4 SINE B4 0 292 1 7 1568 306 380 17 17 chr5 128899997 128900171 -23637088 - ORR1E LTR MaLR -168 191 18 7 1568 250 313 73 84 chr5 128900850 128901028 -23636231 + MTEb LTR MaLR 203 378 -1 7 1568 2884 124 2 28 chr5 128901131 128901596 -23635663 - RLTR11B LTR ERVK 0 453 1 7 1568 305 250 183 11 chr5 128901598 128901691 -23635568 + RLTR11A2 LTR ERVK 419 527 0 7 1568 590 279 0 15 chr5 128902105 128902236 -23635023 - RSINE1 SINE B4 -35 130 2 7 1568 838 166 43 0 chr5 128902255 128902394 -23634865 - B1_Mus1 SINE Alu -1 147 3 7 1568 1013 242 14 0 chr5 128902484 128902703 -23634556 - ID_B1 SINE B4 0 224 3 7 1568 288 0 0 0 chr5 128903315 128903347 -23633912 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1568 215 274 39 0 chr5 128903364 128903415 -23633844 + MER91B DNA Tip100 20 72 -118 7 1568 292 344 75 53 chr5 128903420 128903647 -23633612 - MER58B DNA MER1_type -23 318 87 7 1568 339 186 17 0 chr5 128903654 128903713 -23633546 + tRNA-Val-GTY tRNA tRNA 1 60 -16 7 1568 630 204 65 70 chr5 128903728 128903913 -23633346 + B3A SINE B2 2 185 -13 7 1568 297 260 27 27 chr5 128903959 128904034 -23633225 - ORR1E LTR MaLR -188 171 97 7 1568 243 286 32 0 chr5 128904028 128904091 -23633168 + MLT1A0 LTR MaLR 228 292 -73 7 1568 324 333 86 19 chr5 128904151 128904313 -23632946 + Charlie8 DNA MER1_type 75 247 -2181 7 1568 1774 215 48 0 chr5 128904819 128905177 -23632082 + MTEb LTR MaLR 5 379 0 7 1568 2464 158 2 19 chr5 128905249 128905663 -23631596 + MTB_Mm LTR MaLR 1 407 0 7 1568 183 42 0 0 chr5 128906325 128906349 -23630910 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7 1568 255 317 43 21 chr5 128906893 128907080 -23630179 + L1MA9 LINE L1 5963 6153 -159 7 1568 991 232 11 16 chr5 128908026 128908214 -23629045 - B3 SINE B2 -29 187 1 7 1568 784 79 0 50 chr5 128909159 128909319 -23627940 + (GGGGA)n Simple_repeat Simple_repeat 3 154 0 7 1568 1050 213 14 23 chr5 128909767 128909983 -23627276 + B3 SINE B2 3 216 0 7 1568 432 269 57 19 chr5 128910694 128910853 -23626406 - Lx8 LINE L1 -197 7276 7112 7 1568 544 185 0 0 chr5 128911233 128911325 -23625934 + B3A SINE B2 2 93 -105 7 1568 510 250 0 0 chr5 128911358 128911510 -23625749 + (TG)n Simple_repeat Simple_repeat 1 152 0 8 1568 318 258 48 67 chr5 128911513 128911617 -23625642 + B3A SINE B2 97 198 0 7 1568 24 53 0 0 chr5 128911619 128911657 -23625602 + AT_rich Low_complexity Low_complexity 1 38 0 8 1568 1065 248 49 28 chr5 128912312 128912598 -23624661 + B4A SINE B4 1 292 0 8 1568 314 360 55 16 chr5 128913528 128913655 -23623604 - MLT1K LTR MaLR -4 591 460 8 1568 859 271 22 18 chr5 128913704 128913926 -23623333 - ID_B1 SINE B4 0 224 2 8 1568 227 306 59 0 chr5 128913994 128914079 -23623180 - MLT1K LTR MaLR -320 275 186 8 1568 515 164 103 79 chr5 128914734 128914860 -23622399 - B1_Mur1 SINE Alu -18 131 3 8 1568 225 347 40 0 chr5 128915685 128915809 -23621450 + LTR33A LTR ERVL 306 434 -86 8 1568 694 249 87 10 chr5 128915823 128916018 -23621241 + B3 SINE B2 2 211 -5 8 1568 847 199 0 0 chr5 128916044 128916190 -23621069 + B1_Mus1 SINE Alu 1 146 -2 8 1568 995 212 19 24 chr5 128916195 128916403 -23620856 + B3 SINE B2 1 207 -9 8 1568 241 313 0 0 chr5 128916708 128916791 -23620468 + L1MD LINE L1 2508 2590 -3556 8 1568 247 280 90 0 chr5 128916867 128916967 -23620292 + L1MD LINE L1 2638 2746 -3400 8 1568 392 278 18 9 chr5 128916976 128917085 -23620174 + PB1D10 SINE Alu 2 111 -6 8 1568 385 285 37 5 chr5 128917162 128917288 -23619971 + B1F SINE Alu 18 149 0 8 1568 632 304 93 36 chr5 128917429 128917685 -23619574 + L1MD LINE L1 2885 3179 -2967 8 1568 261 0 0 0 chr5 128917685 128917714 -23619545 + (TAA)n Simple_repeat Simple_repeat 2 30 0 8 1568 632 294 86 36 chr5 128917714 128918107 -23619152 + L1MD LINE L1 3180 3575 -2571 8 1568 873 271 78 43 chr5 128918184 128918442 -23618817 + B4 SINE B4 20 286 -6 8 1568 234 305 52 0 chr5 128918502 128918656 -23618603 + L1MD LINE L1 3705 3866 -2280 8 1568 450 214 78 26 chr5 128919045 128919160 -23618099 + B3 SINE B2 93 213 -3 8 1568 397 294 89 25 chr5 128919166 128919323 -23617936 + L1M4 LINE L1 4883 5049 -1097 8 1568 546 265 95 36 chr5 128919517 128919791 -23617468 + L1M4 LINE L1 5329 5618 -561 8 1568 1129 247 128 37 chr5 128919791 128920153 -23617106 + MTD LTR MaLR 1 379 -40 8 1568 543 309 73 125 chr5 128920572 128920875 -23616384 + B4A SINE B4 2 288 -4 8 1568 724 329 42 88 chr5 128921180 128921690 -23615569 - Charlie2b DNA MER1_type 0 2782 2287 8 1568 1092 180 34 14 chr5 128921690 128921899 -23615360 + B3 SINE B2 1 213 -3 8 1568 718 329 42 88 chr5 128921899 128922012 -23615247 - Charlie2b DNA MER1_type -496 2286 2188 8 1568 252 395 6 48 chr5 128922121 128922286 -23614973 + RMER15 LTR ERVL 314 471 -104 8 1568 326 80 0 20 chr5 128922397 128922448 -23614811 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 8 1568 514 259 0 11 chr5 128922486 128922642 -23614617 + (TATATG)n Simple_repeat Simple_repeat 2 155 0 8 1568 189 0 0 0 chr5 128922642 128922663 -23614596 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1568 514 259 0 11 chr5 128922663 128922686 -23614573 + (TATATG)n Simple_repeat Simple_repeat 3 25 0 8 1568 527 266 91 67 chr5 128923220 128923522 -23613737 + B4 SINE B4 3 286 -6 8 1568 266 254 0 0 chr5 128925156 128925223 -23612036 - RMER15 LTR ERVL -106 469 403 8 1568 297 316 51 0 chr5 128925233 128925331 -23611928 - Lx8 LINE L1 -218 7255 7153 8 1568 292 360 14 28 chr5 128925320 128925463 -23611796 - Lx8 LINE L1 -249 7224 7084 8 1568 414 253 6 21 chr5 128925463 128925575 -23611684 + MLT1A1 LTR MaLR 5 114 -294 8 1568 241 289 48 0 chr5 128925812 128925895 -23611364 + MTEa LTR MaLR 287 373 -6 8 1568 581 260 16 17 chr5 128927660 128927821 -23609438 + B3A SINE B2 35 183 -12 8 1568 352 310 74 20 chr5 128928235 128928383 -23608876 - HAL1-3A_ME LINE L1 -419 2439 2284 8 1568 422 150 30 122 chr5 128928916 128929113 -23608146 + (GGATG)n Simple_repeat Simple_repeat 1 179 0 8 1568 346 189 25 121 chr5 128929271 128929515 -23607744 + (GGATG)n Simple_repeat Simple_repeat 1 220 0 8 1568 768 257 22 22 chr5 128930886 128931069 -23606190 + B3A SINE B2 1 183 -15 8 1568 26 0 0 0 chr5 128931084 128931110 -23606149 + AT_rich Low_complexity Low_complexity 1 26 0 8 1568 675 321 15 35 chr5 128931556 128931759 -23605500 - B4 SINE B4 0 292 94 8 1568 245 288 0 0 chr5 128933024 128933090 -23604169 + MLT1D LTR MaLR 439 504 -1 8 1568 264 100 0 0 chr5 128933226 128933266 -23603993 + (TATG)n Simple_repeat Simple_repeat 1 40 0 8 1568 486 273 0 48 chr5 128933269 128933373 -23603886 - RSINE1 SINE B4 -5 160 62 8 1568 287 25 0 24 chr5 128933419 128933460 -23603799 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 8 1568 389 123 0 27 chr5 128934299 128934374 -23602885 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 8 1568 464 232 71 0 chr5 128934550 128934649 -23602610 - PB1D10 SINE Alu 0 117 12 8 1568 321 287 11 11 chr5 128934584 128934672 -23602587 - MT2B2 LTR ERVL -343 241 154 8 1568 879 316 36 21 chr5 128935904 128936185 -23601074 + B4A SINE B4 6 290 -2 8 1568 432 0 0 0 chr5 128937099 128937147 -23600112 + (A)n Simple_repeat Simple_repeat 1 48 0 8 1568 209 171 0 0 chr5 128937651 128937686 -23599573 + C-rich Low_complexity Low_complexity 2 36 0 8 1568 399 21 0 0 chr5 128938014 128938062 -23599197 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1568 24 67 0 0 chr5 128938602 128938647 -23598612 + GC_rich Low_complexity Low_complexity 1 45 0 8 1568 216 97 0 0 chr5 128938941 128938972 -23598287 + (TC)n Simple_repeat Simple_repeat 2 32 0 8 1568 439 202 0 12 chr5 128939626 128939706 -23597553 - MTEb LTR MaLR -4 375 297 8 1568 1561 218 79 8 chr5 128939714 128940080 -23597179 + MTD LTR MaLR 6 397 -22 8 1568 854 219 93 28 chr5 128940078 128940294 -23596965 - MTEb LTR MaLR -115 264 35 8 1568 198 191 0 0 chr5 128940591 128940633 -23596626 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1568 1020 210 28 14 chr5 128940895 128941108 -23596151 - B3 SINE B2 0 216 1 8 1568 342 45 0 0 chr5 128941110 128941154 -23596105 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1568 423 56 0 0 chr5 128941154 128941208 -23596051 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1568 270 0 0 0 chr5 128941208 128941237 -23596022 + (TA)n Simple_repeat Simple_repeat 2 31 0 8 1568 607 171 0 128 chr5 128941239 128941380 -23595879 - B1_Mus1 SINE Alu -25 123 1 8 1568 181 83 0 0 chr5 128943144 128943168 -23594091 - L4 LINE RTE -337 1692 1669 8 1568 238 307 179 36 chr5 128945252 128945475 -23591784 - RMER15 LTR ERVL -15 560 306 8 1568 542 259 81 1 chr5 128946190 128946407 -23590852 + L1MA5A LINE L1 5688 5921 -379 8 1568 344 154 48 8 chr5 128946750 128946874 -23590385 + (CTGGGG)n Simple_repeat Simple_repeat 3 131 0 8 1568 335 293 99 62 chr5 128947059 128947270 -23589989 - MLT1A0 LTR MaLR -146 219 1 8 1568 261 196 0 0 chr5 128947707 128947763 -23589496 + T-rich Low_complexity Low_complexity 1 56 0 8 1568 333 0 0 0 chr5 128948471 128948508 -23588751 + (GA)n Simple_repeat Simple_repeat 2 38 0 8 1568 215 240 10 0 chr5 128948510 128948614 -23588645 + (CA)n Simple_repeat Simple_repeat 1 105 0 8 1568 738 260 119 25 chr5 128948614 128948815 -23588444 + B4 SINE B4 73 292 0 8 1568 351 0 0 0 chr5 128949581 128949620 -23587639 + (TC)n Simple_repeat Simple_repeat 2 40 0 8 1568 441 0 0 0 chr5 128949620 128949668 -23587591 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1568 507 244 8 16 chr5 128949933 128950054 -23587205 - B1F SINE Alu -29 120 1 8 1568 228 35 0 0 chr5 128950257 128950286 -23586973 + (CGG)n Simple_repeat Simple_repeat 1 29 0 8 1568 204 135 0 0 chr5 128950533 128950570 -23586689 + (G)n Simple_repeat Simple_repeat 1 37 0 8 1568 237 132 0 0 chr5 128950685 128950723 -23586536 + (CCCCCA)n Simple_repeat Simple_repeat 4 41 0 8 1568 521 270 35 65 chr5 128951342 128951512 -23585747 + RSINE1 SINE B4 1 165 0 8 1568 866 156 0 14 chr5 128951543 128951686 -23585573 + B1_Mus1 SINE Alu 7 147 -1 8 1568 24 0 0 0 chr5 128951686 128951710 -23585549 + AT_rich Low_complexity Low_complexity 1 24 0 8 1568 26 0 0 0 chr5 128952252 128952278 -23584981 + AT_rich Low_complexity Low_complexity 1 26 0 8 1568 1501 185 66 53 chr5 128952546 128953011 -23584248 - RMER17C LTR ERVK -464 425 1 8 1568 1180 123 0 6 chr5 128953118 128953290 -23583969 + URR1B DNA MER1_type 55 225 0 8 1568 1145 314 43 39 chr5 128953722 128954239 -23583020 - RMER5 LTR ERV1 -15 519 1 8 1568 938 198 83 5 chr5 128954917 128955110 -23582149 - B3 SINE B2 -5 211 4 8 1568 788 235 44 0 chr5 128955460 128955643 -23581616 + B4 SINE B4 33 223 -69 8 1568 497 207 0 0 chr5 128955651 128955733 -23581526 + B1_Mur3 SINE Alu 2 83 -66 8 1568 813 246 58 41 chr5 128955738 128955980 -23581279 + RLTR40 LTR ERVK 1 246 -571 8 1568 765 61 0 0 chr5 128956405 128956503 -23580756 + B1_Mm SINE Alu 50 147 0 8 1568 243 0 0 0 chr5 128956503 128956530 -23580729 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1568 492 18 0 0 chr5 128956586 128956643 -23580616 + (TTTTG)n Simple_repeat Simple_repeat 1 57 0 8 1568 243 269 56 52 chr5 128956801 128956942 -23580317 + B3A SINE B2 42 189 -27 8 1568 362 254 107 66 chr5 128956987 128957109 -23580150 - RSINE1 SINE B4 -17 148 22 8 1568 362 351 91 8 chr5 128957176 128957308 -23579951 - RSINE1 SINE B4 -21 144 2 8 1568 402 21 0 0 chr5 128958535 128958582 -23578677 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1568 372 22 0 0 chr5 128958582 128958626 -23578633 + (GA)n Simple_repeat Simple_repeat 1 45 0 8 1568 390 256 0 0 chr5 128958634 128958798 -23578461 + (TG)n Simple_repeat Simple_repeat 1 164 0 8 1568 249 279 0 0 chr5 128958822 128959001 -23578258 + (TG)n Simple_repeat Simple_repeat 1 179 0 8 1568 552 238 0 0 chr5 128959220 128959325 -23577934 - ID_B1 SINE B4 -6 218 114 8 1568 300 182 24 61 chr5 128959332 128959414 -23577845 - MLT2B5 LTR ERVL -4 551 473 8 1568 756 155 14 0 chr5 128959435 128959733 -23577526 + (TAGA)n Simple_repeat Simple_repeat 1 302 0 8 1568 460 67 0 0 chr5 128959735 128959795 -23577464 + URR1B DNA MER1_type 166 225 0 8 1568 180 0 0 0 chr5 128960940 128960960 -23576299 + (TAA)n Simple_repeat Simple_repeat 2 21 0 8 1568 319 270 21 63 chr5 128962050 128962145 -23575114 - B1F SINE Alu -33 116 26 9 1568 825 301 10 0 chr5 128962837 128963046 -23574213 + B3 SINE B2 6 216 0 9 1568 481 181 141 8 chr5 128963074 128963202 -23574057 - ORR1D2 LTR MaLR -228 146 9 9 1568 697 307 59 89 chr5 128963786 128964090 -23573169 - MTD LTR MaLR 0 419 125 9 1568 288 239 236 9 chr5 128964004 128964114 -23573145 + MTEb LTR MaLR 237 371 -8 9 1568 550 255 128 27 chr5 128964241 128964365 -23572894 + RSINE1 SINE B4 2 141 -24 9 1568 417 20 0 0 chr5 128964365 128964415 -23572844 + (CA)n Simple_repeat Simple_repeat 1 50 0 9 1568 3249 109 4 24 chr5 128964415 128964867 -23572392 - RLTR41 LTR ERV1 -3 443 1 9 1568 550 255 128 27 chr5 128964867 128964890 -23572369 + RSINE1 SINE B4 142 164 -1 9 1568 210 325 55 1 chr5 128964925 128965036 -23572223 + MIRc SINE MIR 36 151 -57 9 1568 266 240 89 10 chr5 128966318 128966419 -23570840 - PB1D10 SINE Alu 0 117 9 9 1568 495 259 0 27 chr5 128967324 128967435 -23569824 + PB1D7 SINE Alu 10 120 0 9 1568 228 244 10 148 chr5 128967747 128967763 -23569496 + MT2B2 LTR ERVL 155 156 -428 9 1568 418 245 26 62 chr5 128967763 128967857 -23569402 + B1F SINE Alu 1 94 -55 9 1568 309 26 0 0 chr5 128967857 128967895 -23569364 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1568 418 245 26 62 chr5 128967895 128967913 -23569346 + B1F SINE Alu 95 109 -40 9 1568 253 309 26 26 chr5 128967966 128968079 -23569180 + MLT1K LTR MaLR 430 542 -53 9 1568 897 167 16 16 chr5 128968216 128968473 -23568786 + (TG)n Simple_repeat Simple_repeat 1 257 0 9 1568 26 0 0 0 chr5 128969444 128969470 -23567789 + AT_rich Low_complexity Low_complexity 1 26 0 9 1568 216 86 0 0 chr5 128969474 128969509 -23567750 + (T)n Simple_repeat Simple_repeat 1 35 0 9 1568 1029 101 0 0 chr5 128969510 128969648 -23567611 - B1_Mus1 SINE Alu 0 148 11 9 1568 304 250 148 0 chr5 128970697 128970768 -23566491 - RLTR16 LTR ERVK -13 492 415 9 1568 369 0 0 0 chr5 128970768 128970809 -23566450 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1568 304 250 148 0 chr5 128970809 128970845 -23566414 - RLTR16 LTR ERVK -91 414 370 9 1568 1448 259 76 35 chr5 128972463 128972576 -23564683 - MTD LTR MaLR -1 418 301 9 1568 1171 69 0 0 chr5 128972576 128972720 -23564539 + B1_Mus1 SINE Alu 3 146 -2 9 1568 231 36 0 0 chr5 128972720 128972748 -23564511 + (GA)n Simple_repeat Simple_repeat 2 29 0 9 1568 1448 259 76 35 chr5 128972748 128973030 -23564229 - MTD LTR MaLR -119 300 7 9 1568 353 279 62 62 chr5 128973103 128973156 -23564103 + B4A SINE B4 125 175 -117 9 1568 1169 119 165 0 chr5 128973156 128973350 -23563909 - URR1A DNA MER1_type 0 226 1 9 1568 353 279 62 62 chr5 128973350 128973441 -23563818 + B4A SINE B4 176 269 -23 9 1568 282 280 0 99 chr5 128973437 128973528 -23563731 + B4A SINE B4 211 292 0 9 1568 250 163 0 0 chr5 128973962 128974011 -23563248 + (TA)n Simple_repeat Simple_repeat 2 50 0 9 1568 399 160 0 0 chr5 128974012 128974106 -23563153 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 9 1568 642 196 66 29 chr5 128974180 128974317 -23562942 - B1_Mur4 SINE Alu -7 143 2 9 1569 495 284 19 126 chr5 128974894 128974994 -23562265 - CYRA11_Mm Unknown Y-chromosome -167 450 174 9 1569 1096 196 9 29 chr5 128974994 128975204 -23562055 + URR1B DNA MER1_type 17 222 -3 9 1569 306 0 0 0 chr5 128975351 128975385 -23561874 + (CCA)n Simple_repeat Simple_repeat 2 35 0 9 1569 189 107 0 0 chr5 128975420 128975448 -23561811 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 9 1569 458 214 178 23 chr5 128975448 128975577 -23561682 + B1_Mur2 SINE Alu 1 149 0 9 1569 321 68 0 0 chr5 128976414 128976458 -23560801 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 1569 255 235 0 38 chr5 128976817 128976870 -23560389 - ORR1B2 LTR MaLR 0 367 317 9 1569 498 138 20 13 chr5 128976855 128976955 -23560304 - ORR1B2 LTR MaLR -274 93 2 9 1569 209 200 0 0 chr5 128977135 128977170 -23560089 + polypurine Low_complexity Low_complexity 1 35 0 9 1569 435 125 0 0 chr5 128977700 128977772 -23559487 + (TG)n Simple_repeat Simple_repeat 2 73 0 9 1569 428 208 152 65 chr5 128977850 128978040 -23559219 + MTD LTR MaLR 10 204 -196 9 1569 268 333 66 58 chr5 128978666 128978924 -23558335 + MER113 DNA MER1_type 122 381 -140 9 1569 984 236 128 98 chr5 128979129 128979388 -23557871 + MTE2b LTR MaLR 42 310 -69 9 1569 2202 175 107 19 chr5 128979388 128979900 -23557359 + RLTR31B_Mm LTR ERVK 1 557 0 9 1569 984 236 128 98 chr5 128979900 128979968 -23557291 + MTE2b LTR MaLR 311 379 0 9 1569 236 229 200 0 chr5 128982044 128982114 -23555145 - ORR1E LTR MaLR -3 376 293 9 1569 450 0 0 0 chr5 128982232 128982282 -23554977 + (GA)n Simple_repeat Simple_repeat 2 51 0 9 1569 399 279 23 62 chr5 128982282 128982403 -23554856 - ORR1E LTR MaLR -193 166 50 9 1569 782 279 0 0 chr5 128982879 128983036 -23554223 + B3 SINE B2 39 195 -21 9 1569 2010 117 9 47 chr5 128983036 128983378 -23553881 - ORR1A4 LTR MaLR 0 329 1 9 1569 879 227 81 10 chr5 128983509 128983718 -23553541 - URR1A DNA MER1_type -2 224 1 9 1569 324 0 0 0 chr5 128984325 128984361 -23552898 + (TC)n Simple_repeat Simple_repeat 1 36 0 9 1569 4230 122 85 18 chr5 128984943 128985652 -23551607 - RMER6A LTR ERVK 0 756 1 9 1569 234 304 128 60 chr5 128985881 128986014 -23551245 + B4A SINE B4 13 154 -138 9 1569 296 277 53 15 chr5 128986043 128986175 -23551084 + Lx8 LINE L1 7264 7400 -73 9 1569 209 351 0 0 chr5 128986176 128986250 -23551009 + GA-rich Low_complexity Low_complexity 1 74 0 9 1569 30 0 0 0 chr5 128986254 128986284 -23550975 + AT_rich Low_complexity Low_complexity 1 30 0 9 1569 477 251 116 43 chr5 128986319 128986577 -23550682 + L1MDa LINE L1 2213 2489 -4144 9 1569 470 245 26 80 chr5 128986637 128986686 -23550573 + MT2B LTR ERVL 116 156 -445 9 1569 872 98 0 0 chr5 128986686 128986798 -23550461 + B1_Mm SINE Alu 2 113 -34 9 1569 859 180 36 24 chr5 128986792 128986957 -23550302 + B3 SINE B2 46 212 -4 9 1569 337 333 27 34 chr5 128986957 128987106 -23550153 + L1MDa LINE L1 2570 2717 -3820 9 1569 1032 79 0 0 chr5 128987593 128987745 -23549514 + (TG)n Simple_repeat Simple_repeat 1 152 0 9 1569 996 229 83 9 chr5 128987953 128988182 -23549077 - B4 SINE B4 -4 288 43 9 1569 22 35 0 0 chr5 128989683 128989712 -23547547 + AT_rich Low_complexity Low_complexity 1 29 0 9 1569 305 248 85 42 chr5 128989842 128989960 -23547299 - L1MEe LINE L1 -4051 803 681 9 1569 183 385 17 60 chr5 128990234 128990350 -23546909 + L2b LINE L2 3133 3243 -132 9 1569 912 280 147 50 chr5 128990518 128990838 -23546421 + MTE2a LTR MaLR 1 351 -28 9 1569 378 129 0 0 chr5 128990844 128990906 -23546353 + (TG)n Simple_repeat Simple_repeat 2 63 0 9 1569 959 192 46 11 chr5 128990909 128991083 -23546176 - B3 SINE B2 -36 180 1 9 1569 348 83 0 0 chr5 128991195 128991243 -23546016 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 9 1569 868 152 72 52 chr5 128992122 128992316 -23544943 + URR1B DNA MER1_type 28 225 0 9 1569 213 39 0 0 chr5 128992972 128992998 -23544261 + (G)n Simple_repeat Simple_repeat 1 26 0 9 1569 271 202 47 39 chr5 128992998 128993127 -23544132 + (CAGAGA)n Simple_repeat Simple_repeat 1 130 0 9 1569 22 0 0 0 chr5 128993893 128993915 -23543344 + GC_rich Low_complexity Low_complexity 1 22 0 9 1569 838 200 96 20 chr5 128994845 128995044 -23542215 - B3 SINE B2 -1 215 2 9 1569 2074 147 51 56 chr5 128995109 128995504 -23541755 + ORR1B1 LTR MaLR 2 394 0 9 1569 633 47 10 0 chr5 128996273 128996368 -23540891 + B1_Mur3 SINE Alu 48 149 0 9 1569 718 202 0 11 chr5 128996441 128996621 -23540638 + GA-rich Low_complexity Low_complexity 2 179 0 9 1569 234 105 0 0 chr5 128996622 128996660 -23540599 + (CAGA)n Simple_repeat Simple_repeat 1 38 0 9 1569 786 166 65 26 chr5 128997197 128997352 -23539907 - B3A SINE B2 -37 161 1 9 1569 488 277 31 25 chr5 128998321 128998480 -23538779 + HAL1-2a_MD LINE L1 2357 2516 -508 9 1569 228 67 0 0 chr5 128998776 128998806 -23538453 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 9 1569 27 0 0 0 chr5 128998961 128998988 -23538271 + AT_rich Low_complexity Low_complexity 1 27 0 9 1569 330 26 0 0 chr5 129000131 129000170 -23537089 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1569 1802 148 24 14 chr5 129000171 129000562 -23536697 - RLTR11A LTR ERVK 0 528 22 2 1569 268 315 22 73 chr5 129000766 129000903 -23536356 - MLT1J2 LTR MaLR -212 236 107 3 1569 201 226 0 0 chr5 129001332 129001385 -23535874 + (TG)n Simple_repeat Simple_repeat 1 53 0 4 1569 1060 264 28 3 chr5 129001385 129001670 -23535589 - B4 SINE B4 0 292 1 5 1569 477 67 0 3 chr5 129002532 129002598 -23534661 - ORR1A4 LTR MaLR -13 357 263 6 1569 1868 129 130 19 chr5 129002648 129002972 -23534287 + ORR1C2 LTR MaLR 24 383 -1 7 1569 2456 192 41 117 chr5 129003279 129003940 -23533319 - RMER19C LTR ERVK 0 611 1 8 1569 818 285 4 89 chr5 129004682 129004917 -23532342 - B4 SINE B4 -77 215 1 9 1569 714 183 129 41 chr5 129004991 129005162 -23532097 + B3 SINE B2 2 187 -29 1 1569 267 152 0 0 chr5 129005162 129005208 -23532051 + (TAG)n Simple_repeat Simple_repeat 3 48 0 1 1569 761 281 96 36 chr5 129006156 129006407 -23530852 - MTE2b LTR MaLR -8 371 106 1 1569 1032 320 36 67 chr5 129006494 129006666 -23530593 + Lx9 LINE L1 6972 7121 -523 1 1569 1577 33 6 0 chr5 129006666 129006846 -23530413 + B2_Mm1t SINE B2 1 181 -12 1 1569 396 40 0 0 chr5 129006846 129006896 -23530363 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 1 1569 1032 320 36 67 chr5 129006896 129007242 -23530017 + Lx9 LINE L1 7122 7474 -170 1 1569 299 302 33 49 chr5 129007258 129007380 -23529879 - MTE2b LTR MaLR -258 121 2 1 1569 265 224 0 56 chr5 129007860 129007931 -23529328 + RMER5 LTR ERV1 47 113 -421 1 1569 1555 216 97 29 chr5 129007968 129008349 -23528910 + MTD LTR MaLR 13 419 0 1 1569 963 256 85 16 chr5 129008349 129008655 -23528604 + RMER5 LTR ERV1 168 494 -40 1 1569 946 151 0 0 chr5 129008656 129008795 -23528464 + B1_Mus1 SINE Alu 2 140 -8 1 1569 1122 90 17 6 chr5 129008816 129008994 -23528265 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1 1569 854 126 8 42 chr5 129009126 129009374 -23527885 + (TAGA)n Simple_repeat Simple_repeat 1 239 0 2 1569 369 0 0 0 chr5 129009383 129009424 -23527835 + (CATA)n Simple_repeat Simple_repeat 1 41 0 2 1569 460 45 0 29 chr5 129009731 129009800 -23527459 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 2 1569 674 252 46 63 chr5 129009901 129010138 -23527121 - MLT2C1 LTR ERVL -108 289 57 2 1569 399 206 39 0 chr5 129010714 129010869 -23526390 + (TAGA)n Simple_repeat Simple_repeat 4 164 0 2 1569 627 176 112 0 chr5 129010869 129010994 -23526265 + URR1A DNA MER1_type 67 205 -21 2 1569 1867 170 196 16 chr5 129011007 129011455 -23525804 - MT2A LTR ERVL 0 533 5 2 1569 599 263 22 54 chr5 129011475 129011660 -23525599 + HAL1-2a_MD LINE L1 2347 2525 -499 2 1569 774 107 11 40 chr5 129011666 129011841 -23525418 + CT-rich Low_complexity Low_complexity 3 172 0 2 1569 289 326 15 22 chr5 129011856 129011991 -23525268 + (CACCAT)n Simple_repeat Simple_repeat 3 136 0 2 1569 482 270 9 9 chr5 129012411 129012523 -23524736 + PB1D7 SINE Alu 1 112 -8 3 1569 305 140 18 0 chr5 129012783 129012840 -23524419 + GA-rich Low_complexity Low_complexity 2 59 0 3 1569 1163 36 12 29 chr5 129012845 129013016 -23524243 + (GGAAA)n Simple_repeat Simple_repeat 4 171 0 3 1569 365 241 96 0 chr5 129013021 129013104 -23524155 + RMER30 DNA MER1_type 110 200 -2 3 1569 812 203 26 62 chr5 129013150 129013180 -23524079 - B3A SINE B2 -10 188 168 3 1569 198 0 0 0 chr5 129013180 129013202 -23524057 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 1569 234 0 0 0 chr5 129013202 129013227 -23524032 + (CG)n Simple_repeat Simple_repeat 2 27 0 3 1569 812 203 26 62 chr5 129013227 129013389 -23523870 - B3A SINE B2 -31 167 3 3 1569 205 294 166 11 chr5 129013774 129013902 -23523357 - MIR SINE MIR -62 200 64 3 1569 298 276 26 13 chr5 129014076 129014153 -23523106 - MTEb LTR MaLR -55 324 247 3 1569 2207 143 90 6 chr5 129014154 129014546 -23522713 - ORR1B1 LTR MaLR -8 386 1 3 1569 465 283 35 10 chr5 129014904 129015067 -23522192 - B3 SINE B2 0 216 48 4 1569 2166 133 11 14 chr5 129015076 129015428 -23521831 - ORR1B1 LTR MaLR -3 391 41 4 1569 1545 226 0 3 chr5 129015603 129015891 -23521368 + B4 SINE B4 2 288 -4 4 1569 355 293 19 66 chr5 129016580 129016686 -23520573 + PB1D10 SINE Alu 9 109 -8 4 1569 519 122 0 0 chr5 129016689 129016779 -23520480 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 4 1569 1067 253 63 97 chr5 129016888 129017269 -23519990 + MTE2a LTR MaLR 1 368 -11 4 1569 2078 210 50 74 chr5 129017297 129017783 -23519476 + RLTR20B3 LTR ERVK 22 483 -94 4 1569 288 0 0 0 chr5 129017783 129017815 -23519444 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1569 2078 210 50 74 chr5 129017815 129017884 -23519375 + RLTR20B3 LTR ERVK 484 563 -14 4 1569 357 260 112 16 chr5 129018259 129018384 -23518875 - RMER15 LTR ERVL -92 483 347 4 1569 658 287 124 105 chr5 129018690 129019060 -23518199 + MTEa LTR MaLR 3 379 0 4 1569 2008 129 145 40 chr5 129020472 129020741 -23516518 - MTC LTR MaLR 0 421 105 5 1569 1346 74 25 45 chr5 129020741 129020903 -23516356 + B2_Mm2 SINE B2 1 160 -35 5 1569 225 0 0 0 chr5 129020903 129020928 -23516331 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 5 1569 1346 74 25 45 chr5 129020928 129020963 -23516296 + B2_Mm2 SINE B2 161 194 -1 5 1569 2008 129 145 40 chr5 129020963 129021072 -23516187 - MTC LTR MaLR -317 104 3 5 1569 711 165 29 50 chr5 129021235 129021375 -23515884 - B1_Mur4 SINE Alu -12 138 2 5 1569 333 109 0 0 chr5 129021699 129021754 -23515505 + (GTTTG)n Simple_repeat Simple_repeat 1 55 0 5 1569 1129 134 115 29 chr5 129022287 129022495 -23514764 + URR1A DNA MER1_type 1 226 0 5 1569 453 255 41 0 chr5 129022566 129022664 -23514595 + B4 SINE B4 2 103 -189 5 1569 564 217 139 0 chr5 129022680 129022809 -23514450 + B3 SINE B2 70 216 0 5 1569 2257 122 24 48 chr5 129023550 129023726 -23513533 + RMER17C LTR ERVK 1 179 -231 5 1569 453 36 0 0 chr5 129023726 129023781 -23513478 + (TCC)n Simple_repeat Simple_repeat 2 56 0 5 1569 2257 122 24 48 chr5 129023781 129024024 -23513235 + RMER17C LTR ERVK 180 410 0 5 1569 340 296 65 0 chr5 129024244 129024352 -23512907 - B1F2 SINE Alu -24 125 11 6 1569 240 254 0 45 chr5 129024304 129024370 -23512889 - B4 SINE B4 -149 143 81 6 1569 273 207 4 48 chr5 129025897 129025980 -23511279 - Lx6 LINE L1 0 7460 7389 6 1569 417 226 17 17 chr5 129026949 129027129 -23510130 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1569 705 67 0 0 chr5 129027144 129027248 -23510011 + (TC)n Simple_repeat Simple_repeat 1 104 0 6 1569 207 0 0 0 chr5 129027859 129027882 -23509377 + (GA)n Simple_repeat Simple_repeat 1 23 0 6 1569 346 110 97 0 chr5 129027892 129028046 -23509213 + (TAGA)n Simple_repeat Simple_repeat 2 170 0 6 1569 1022 101 29 0 chr5 129028176 129028314 -23508945 + B1_Mus1 SINE Alu 1 142 -6 6 1569 216 0 0 0 chr5 129028924 129028948 -23508311 + (CATA)n Simple_repeat Simple_repeat 3 26 0 6 1569 265 339 30 30 chr5 129028967 129029134 -23508125 + (CATG)n Simple_repeat Simple_repeat 3 169 0 6 1569 923 173 146 0 chr5 129029151 129029336 -23507923 + B3 SINE B2 1 212 -4 7 1569 310 352 0 8 chr5 129029402 129029528 -23507731 + (CATA)n Simple_repeat Simple_repeat 4 128 0 7 1569 329 339 32 0 chr5 129030085 129030209 -23507050 + MLT1B LTR MaLR 40 167 -223 7 1569 350 223 24 24 chr5 129031226 129031350 -23505909 + (CA)n Simple_repeat Simple_repeat 1 124 0 7 1569 367 317 56 33 chr5 129031588 129031803 -23505456 + RMER15 LTR ERVL 351 570 -5 7 1569 293 223 22 22 chr5 129031840 129032019 -23505240 + (CATA)n Simple_repeat Simple_repeat 1 179 0 7 1569 295 279 94 87 chr5 129032023 129032310 -23504949 - RLTR21 LTR ERVK -266 1306 1018 7 1569 971 235 64 0 chr5 129032751 129032955 -23504304 + ID_B1 SINE B4 4 220 -4 7 1569 711 0 0 0 chr5 129033363 129033442 -23503817 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 7 1569 191 328 80 65 chr5 129033598 129033797 -23503462 - MIRb SINE MIR -14 254 53 7 1569 839 204 70 56 chr5 129034489 129034702 -23502557 - B3 SINE B2 0 216 1 8 1569 405 0 0 0 chr5 129034719 129034764 -23502495 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 1569 378 0 0 0 chr5 129034764 129034806 -23502453 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1569 1777 302 83 40 chr5 129034814 129035610 -23501649 - Lx8 LINE L1 -146 7327 6498 8 1569 198 167 0 0 chr5 129036114 129036150 -23501109 + GA-rich Low_complexity Low_complexity 3 38 0 8 1569 456 322 40 53 chr5 129037314 129037536 -23499723 - MLT1F1 LTR MaLR -291 278 69 8 1569 1983 120 61 29 chr5 129037723 129038067 -23499192 + RLTR15 LTR ERVK 1 355 -4 8 1569 1693 31 0 0 chr5 129038226 129038419 -23498840 + B2_Mm1a SINE B2 1 193 0 8 1569 1299 61 0 0 chr5 129038522 129038686 -23498573 + B2_Mm2 SINE B2 1 164 -31 8 1569 393 58 0 0 chr5 129038713 129038765 -23498494 + (GA)n Simple_repeat Simple_repeat 1 52 0 8 1569 1119 83 14 0 chr5 129038913 129039057 -23498202 + B1_Mm SINE Alu 2 147 0 9 1569 653 290 8 104 chr5 129039130 129039380 -23497879 + MTE2a LTR MaLR 1 226 -153 9 1569 508 278 43 65 chr5 129040228 129040413 -23496846 - HAL1-2a_MD LINE L1 -500 2524 2344 9 1569 198 191 0 0 chr5 129040443 129040490 -23496769 + (ATGGTG)n Simple_repeat Simple_repeat 5 51 0 9 1569 180 200 0 0 chr5 129040544 129040594 -23496665 + (ATG)n Simple_repeat Simple_repeat 1 50 0 9 1569 230 371 32 63 chr5 129041119 129041309 -23495950 + MLT1G LTR MaLR 30 213 -378 9 1569 432 0 0 0 chr5 129042338 129042386 -23494873 + (TG)n Simple_repeat Simple_repeat 2 49 0 9 1569 341 334 41 1 chr5 129043228 129043405 -23493854 + Lx9 LINE L1 7142 7417 -227 9 1569 305 197 0 14 chr5 129043409 129043481 -23493778 + (TG)n Simple_repeat Simple_repeat 1 71 0 9 1569 299 234 52 52 chr5 129043481 129043634 -23493625 + Lx9 LINE L1 7458 7610 -34 9 1569 534 217 143 51 chr5 129044006 129044181 -23493078 + B3A SINE B2 1 191 -7 1 1569 228 200 0 0 chr5 129044276 129044336 -23492923 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1569 210 207 18 26 chr5 129044339 129044453 -23492806 + (TCTCTG)n Simple_repeat Simple_repeat 2 114 0 1 1569 314 266 0 0 chr5 129044465 129044559 -23492700 + CT-rich Low_complexity Low_complexity 1 94 0 1 1569 293 341 119 58 chr5 129045018 129045295 -23491964 + MLT1J1 LTR MaLR 1 294 -150 1 1569 849 20 0 0 chr5 129045979 129046078 -23491181 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 1 1569 499 300 23 8 chr5 129046147 129046278 -23490981 - ID_B1 SINE B4 0 224 92 1 1569 790 185 7 15 chr5 129046446 129046583 -23490676 + B1_Mus1 SINE Alu 1 136 -12 1 1569 216 0 0 0 chr5 129046583 129046607 -23490652 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1569 645 249 67 17 chr5 129046665 129046845 -23490414 + B3A SINE B2 1 189 -9 1 1569 1941 133 37 3 chr5 129046880 129047175 -23490084 + Lx4A LINE L1 6749 7053 -5 1 1569 222 37 0 0 chr5 129047175 129047202 -23490057 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1569 224 241 35 0 chr5 129048492 129048550 -23488709 + GA-rich Low_complexity Low_complexity 2 61 0 1 1569 2290 170 27 10 chr5 129048779 129049188 -23488071 + MTD LTR MaLR 4 419 0 1 1569 351 44 0 0 chr5 129050478 129050523 -23486736 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1569 214 307 40 13 chr5 129050524 129050537 -23486722 + B4 SINE B4 71 85 -207 1 1569 337 296 8 57 chr5 129050537 129050659 -23486600 + PB1D10 SINE Alu 1 116 -1 1 1569 415 68 66 33 chr5 129050780 129050902 -23486357 + (TCTA)n Simple_repeat Simple_repeat 1 126 0 1 1569 449 324 122 18 chr5 129051088 129051374 -23485885 - MLT1B LTR MaLR -25 365 50 1 1569 276 233 0 0 chr5 129052226 129052299 -23484960 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1569 990 266 88 30 chr5 129053000 129053365 -23483894 + RMER15 LTR ERVL 188 573 -2 1 1569 2113 242 24 55 chr5 129053472 129054014 -23483245 - RMER19C LTR ERVK 0 611 87 1 1569 238 226 19 0 chr5 129054827 129054876 -23482383 + MTEb LTR MaLR 234 283 -96 1 1569 1124 87 21 104 chr5 129054876 129055069 -23482190 + ORR1A3 LTR MaLR 1 177 -149 1 1569 945 282 101 76 chr5 129055215 129055304 -23481955 + Lx8 LINE L1 6630 6716 -757 1 1569 1229 34 0 13 chr5 129055304 129055453 -23481806 + B1_Mm SINE Alu 1 147 0 1 1569 945 282 101 76 chr5 129055453 129055889 -23481370 + Lx8 LINE L1 6717 7168 -305 1 1569 1183 116 6 0 chr5 129056195 129056367 -23480892 + B2_Mm2 SINE B2 2 174 -21 1 1569 422 304 7 14 chr5 129056452 129056592 -23480667 + Lx7 LINE L1 6989 7139 -334 1 1569 612 0 0 0 chr5 129056605 129056673 -23480586 + (GGAA)n Simple_repeat Simple_repeat 4 71 0 1 1569 459 0 0 0 chr5 129056673 129056724 -23480535 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1569 376 301 14 49 chr5 129056724 129056867 -23480392 + Lx7 LINE L1 7136 7273 -200 1 1569 24 0 0 0 chr5 129057025 129057049 -23480210 + AT_rich Low_complexity Low_complexity 1 24 0 1 1569 277 325 53 98 chr5 129057169 129057394 -23479865 + ORR1E LTR MaLR 103 317 -42 1 1569 665 216 64 115 chr5 129057615 129057850 -23479409 + ID_B1 SINE B4 1 223 -1 1 1569 22 35 0 0 chr5 129057850 129057879 -23479380 + AT_rich Low_complexity Low_complexity 1 29 0 1 1569 525 71 0 0 chr5 129058876 129058946 -23478313 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1569 316 239 0 14 chr5 129058965 129059037 -23478222 + PB1D10 SINE Alu 43 113 -4 1 1569 1479 282 96 23 chr5 129059595 129059744 -23477515 - Lx7 LINE L1 -210 7486 7315 1 1569 1991 175 56 37 chr5 129059744 129060154 -23477105 + MTC LTR MaLR 4 421 0 1 1569 1479 282 96 23 chr5 129060154 129060618 -23476641 - Lx7 LINE L1 -382 7314 6828 1 1569 499 281 99 50 chr5 129060619 129060840 -23476419 - B4A SINE B4 -60 232 1 1 1569 1686 169 32 115 chr5 129061110 129061353 -23475906 - ORR1C2 LTR MaLR 0 384 137 1 1569 1636 21 0 0 chr5 129061353 129061545 -23475714 + B2_Mm1a SINE B2 1 192 -1 1 1569 1686 169 32 115 chr5 129061545 129061622 -23475637 - ORR1C2 LTR MaLR -248 136 79 1 1569 772 182 7 33 chr5 129061622 129061775 -23475484 + B1_Mur4 SINE Alu 1 149 -1 1 1569 1686 169 32 115 chr5 129061775 129061861 -23475398 - ORR1C2 LTR MaLR -306 78 11 1 1569 858 240 202 42 chr5 129061895 129062223 -23475036 - MTEa LTR MaLR -3 416 1 1 1569 3202 73 2 40 chr5 129062653 129063125 -23474134 - Lx3_Mus LINE L1 0 7009 6556 1 1569 486 228 144 56 chr5 129064822 129064933 -23472326 + MTE2a LTR MaLR 159 285 -94 1 1569 2273 131 44 40 chr5 129064933 129065338 -23471921 - MTB_Mm LTR MaLR 0 407 1 1 1569 486 228 144 56 chr5 129065338 129065421 -23471838 + MTE2a LTR MaLR 286 370 -9 1 1569 279 0 0 0 chr5 129065856 129065887 -23471372 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1569 902 132 0 0 chr5 129066526 129066662 -23470597 + B1_Mur4 SINE Alu 2 137 -13 1 1569 288 369 47 16 chr5 129066689 129066723 -23470536 + MLT1H1 LTR MaLR 70 103 -452 1 1569 2907 152 48 80 chr5 129066723 129067436 -23469823 + RMER6C LTR ERVK 1 690 0 1 1569 288 369 47 16 chr5 129067436 129067591 -23469668 + MLT1H1 LTR MaLR 104 265 -290 1 1569 226 364 50 8 chr5 129067686 129067805 -23469454 + MLT1H1 LTR MaLR 424 547 -32 1 1569 396 0 0 0 chr5 129068419 129068463 -23468796 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1569 259 197 16 32 chr5 129068530 129068593 -23468666 - B3 SINE B2 0 216 155 1 1569 223 146 0 0 chr5 129068593 129068634 -23468625 + PB1D10 SINE Alu 33 73 -44 1 1569 235 375 0 20 chr5 129068639 129068737 -23468522 + PB1D10 SINE Alu 21 116 -1 1 1569 552 111 0 0 chr5 129069409 129069508 -23467751 + (TATG)n Simple_repeat Simple_repeat 2 100 0 1 1569 872 159 0 12 chr5 129069510 129069682 -23467577 + CT-rich Low_complexity Low_complexity 1 170 0 1 1569 295 230 11 75 chr5 129070352 129070446 -23466813 - B4 SINE B4 -4 288 201 1 1569 2235 85 0 30 chr5 129070459 129070788 -23466471 + ORR1A2 LTR MaLR 1 319 -8 1 1569 391 346 19 5 chr5 129070887 129071093 -23466166 + L1MB7 LINE L1 5875 6083 -101 1 1569 246 191 51 41 chr5 129071159 129071233 -23466026 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 1 1569 238 68 68 0 chr5 129071233 129071277 -23465982 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 1 1569 246 191 51 41 chr5 129071277 129071300 -23465959 + (TAGA)n Simple_repeat Simple_repeat 3 25 0 1 1569 539 120 63 0 chr5 129071314 129071472 -23465787 + (TAGA)n Simple_repeat Simple_repeat 2 169 0 1 1569 186 43 0 0 chr5 129071482 129071505 -23465754 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 1569 233 189 79 0 chr5 129071535 129071699 -23465560 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 1 1569 783 66 0 0 chr5 129071866 129071972 -23465287 + (GGTTG)n Simple_repeat Simple_repeat 4 109 0 1 1569 222 160 0 74 chr5 129072105 129072186 -23465073 + G-rich Low_complexity Low_complexity 4 78 0 1 1569 267 254 42 14 chr5 129072648 129072720 -23464539 + ID4_ SINE ID 2 75 -8 1 1569 459 92 0 0 chr5 129072992 129073057 -23464202 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1569 647 226 10 113 chr5 129073871 129074075 -23463184 + B3A SINE B2 2 184 -14 1 1569 1195 48 0 0 chr5 129074115 129074262 -23462997 + B1_Mus2 SINE Alu 1 147 0 1 1569 1177 173 40 0 chr5 129074296 129074498 -23462761 + B3 SINE B2 1 210 -6 1 1569 1062 126 0 0 chr5 129074500 129074780 -23462479 + (GAAA)n Simple_repeat Simple_repeat 1 280 0 1 1569 309 298 115 0 chr5 129075381 129075485 -23461774 + MLT1D LTR MaLR 25 140 -365 1 1569 321 125 0 0 chr5 129075934 129075990 -23461269 + (A)n Simple_repeat Simple_repeat 1 56 0 1 1569 714 262 220 11 chr5 129076908 129077190 -23460069 + MTEb LTR MaLR 1 341 -38 1 1569 483 297 116 0 chr5 129077604 129077842 -23459417 - L1MA4 LINE L1 -368 5932 5671 1 1569 1221 202 99 7 chr5 129077936 129078230 -23459029 - MTEb LTR MaLR 0 379 59 1 1569 560 77 11 0 chr5 129078685 129078776 -23458483 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1569 1486 218 124 8 chr5 129078838 129079194 -23458065 + MTD LTR MaLR 3 399 -20 1 1569 899 256 27 0 chr5 129079195 129079336 -23457923 - B4 SINE B4 -59 233 92 1 1569 272 0 79 0 chr5 129079336 129079374 -23457885 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1 1569 899 256 27 0 chr5 129079374 129079451 -23457808 - B4 SINE B4 -201 91 11 1 1569 647 259 6 12 chr5 129080147 129080311 -23456948 + RSINE1 SINE B4 3 165 0 1 1569 681 263 5 98 chr5 129080371 129080546 -23456713 + B3A SINE B2 1 162 -36 1 1569 432 0 0 0 chr5 129080546 129080594 -23456665 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1569 681 263 5 98 chr5 129080594 129080633 -23456626 + B3A SINE B2 163 195 -3 1 1569 557 274 90 82 chr5 129080651 129081005 -23456254 + ORR1E LTR MaLR 1 357 -2 1 1569 296 328 150 19 chr5 129081041 129081308 -23455951 - MLT1K LTR MaLR -123 472 171 1 1569 237 328 0 0 chr5 129083089 129083156 -23454103 + ID2 SINE ID 15 81 -2 1 1569 289 241 82 18 chr5 129083218 129083328 -23453931 + MIR SINE MIR 113 229 -33 1 1569 1255 130 9 57 chr5 129083541 129083770 -23453489 - URR1A DNA MER1_type 0 226 9 1 1569 387 41 0 0 chr5 129083841 129083890 -23453369 + (CACG)n Simple_repeat Simple_repeat 1 49 0 1 1569 379 228 76 30 chr5 129084411 129084542 -23452717 + B1F1 SINE Alu 5 141 -8 1 1569 248 300 0 0 chr5 129085740 129085810 -23451449 + G-rich Low_complexity Low_complexity 1 70 0 1 1569 338 224 48 42 chr5 129086546 129086714 -23450545 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 1 1569 1039 182 75 14 chr5 129086716 129086928 -23450331 - URR1A DNA MER1_type -1 225 1 1 1569 374 57 19 0 chr5 129087924 129087977 -23449282 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1569 748 170 0 62 chr5 129087981 129088125 -23449134 - RSINE1 SINE B4 -28 137 3 1 1569 677 290 78 33 chr5 129088553 129088824 -23448435 + B4 SINE B4 2 284 -8 1 1569 38 0 0 0 chr5 129088956 129088994 -23448265 + AT_rich Low_complexity Low_complexity 1 38 0 1 1569 1527 219 68 8 chr5 129089204 129089558 -23447701 - MTEa LTR MaLR -1 378 4 1 1569 712 199 31 30 chr5 129090883 129091079 -23446180 + B3 SINE B2 5 195 0 1 1569 401 156 0 150 chr5 129092036 129092149 -23445110 + MT2B LTR ERVL 162 257 -344 2 1569 788 151 0 35 chr5 129092051 129092184 -23445075 + B1_Mur3 SINE Alu 11 139 -10 2 1569 216 0 0 0 chr5 129092184 129092208 -23445051 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2 1569 330 298 10 0 chr5 129092342 129092446 -23444813 + (TG)n Simple_repeat Simple_repeat 2 106 0 2 1569 380 215 12 12 chr5 129092498 129092578 -23444681 + ID4_ SINE ID 2 81 -2 2 1569 743 210 77 6 chr5 129092587 129092755 -23444504 + B3A SINE B2 1 180 -18 2 1569 590 160 20 0 chr5 129092831 129092931 -23444328 + ID_B1 SINE B4 102 203 -21 2 1569 241 346 84 7 chr5 129092832 129092986 -23444273 - YREP_Mm Unknown Unknown -1517 295 130 2 1569 440 235 76 0 chr5 129092931 129092950 -23444309 + B1F SINE Alu 21 148 -1 2 1569 1787 218 71 82 chr5 129093878 129093956 -23443303 + Lx8 LINE L1 6321 6397 -1076 2 1569 1278 87 0 11 chr5 129093956 129094141 -23443118 + B2_Mm2 SINE B2 2 184 -11 2 1569 1000 111 6 6 chr5 129094141 129094304 -23442955 + (GAA)n Simple_repeat Simple_repeat 2 164 0 2 1569 1787 222 155 72 chr5 129094304 129094894 -23442365 + Lx8 LINE L1 6398 7037 -436 2 1569 417 241 25 99 chr5 129096495 129096656 -23440603 + B4A SINE B4 73 221 -71 2 1569 895 148 0 0 chr5 129096520 129096662 -23440597 + B1_Mur4 SINE Alu 9 150 0 2 1569 228 86 0 0 chr5 129096687 129096722 -23440537 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2 1569 287 272 24 12 chr5 129096747 129096829 -23440430 + MTD LTR MaLR 322 404 -15 2 1569 345 263 44 56 chr5 129096896 129097014 -23440245 - MTEa LTR MaLR 0 419 269 2 1569 247 202 11 11 chr5 129097074 129097164 -23440095 + (CACCC)n Simple_repeat Simple_repeat 1 90 0 2 1569 599 257 86 0 chr5 129097342 129097517 -23439742 + MTE2b LTR MaLR 182 371 -8 2 1569 381 304 59 65 chr5 129098307 129098476 -23438783 + B4A SINE B4 8 175 -117 2 1569 1313 243 124 11 chr5 129098837 129099008 -23438251 + MTD LTR MaLR 1 180 -239 2 1569 803 144 15 8 chr5 129099008 129099141 -23438118 + B1_Mur3 SINE Alu 3 136 -13 2 1569 1313 244 118 14 chr5 129099141 129099342 -23437917 + MTD LTR MaLR 181 403 -16 2 1569 463 169 125 18 chr5 129099452 129099601 -23437658 + URR1A DNA MER1_type 1 225 -1 2 1569 942 195 20 10 chr5 129100486 129100683 -23436576 + B3 SINE B2 2 200 -16 2 1569 280 274 0 50 chr5 129100795 129100891 -23436368 - MIRb SINE MIR -94 174 83 2 1569 217 125 50 0 chr5 129101125 129101165 -23436094 + MIR SINE MIR 110 151 -57 2 1569 1234 242 58 35 chr5 129101321 129101667 -23435592 - MTEa LTR MaLR -20 359 6 2 1569 1013 182 36 32 chr5 129101821 129102042 -23435217 - URR1A DNA MER1_type 0 226 5 2 1569 290 115 0 19 chr5 129102425 129102478 -23434781 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 2 1570 24 32 0 0 chr5 129106610 129106641 -23430618 + GC_rich Low_complexity Low_complexity 1 31 0 2 1570 22 56 0 0 chr5 129106928 129106964 -23430295 + GC_rich Low_complexity Low_complexity 1 36 0 2 1570 22 56 0 0 chr5 129106991 129107027 -23430232 + GC_rich Low_complexity Low_complexity 1 36 0 2 1570 246 242 0 0 chr5 129108932 129108998 -23428261 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 1570 426 20 0 0 chr5 129110808 129110859 -23426400 + (TG)n Simple_repeat Simple_repeat 1 51 0 2 1570 243 0 0 0 chr5 129110859 129110885 -23426374 + (GA)n Simple_repeat Simple_repeat 1 27 0 2 1570 260 118 77 19 chr5 129111451 129111503 -23425756 + 4.5SRNA scRNA scRNA 32 86 -8 2 1570 747 30 10 0 chr5 129111460 129111560 -23425699 + B1_Mm SINE Alu 47 147 0 2 1570 198 129 48 0 chr5 129111560 129111622 -23425637 + A-rich Low_complexity Low_complexity 1 65 0 2 1570 482 285 100 38 chr5 129112209 129112398 -23424861 - B4A SINE B4 -64 228 32 2 1570 440 306 0 0 chr5 129113228 129113339 -23423920 + PB1D10 SINE Alu 7 117 0 2 1570 1135 238 42 35 chr5 129113927 129114210 -23423049 + B4A SINE B4 1 285 -7 2 1570 354 123 0 0 chr5 129114222 129114279 -23422980 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1570 923 197 45 14 chr5 129114440 129114640 -23422619 - MTE2a LTR MaLR -2 377 171 2 1570 6811 162 47 12 chr5 129114640 129114710 -23422549 - MERVL_2A-int LTR ERVL -2099 3662 3579 2 1570 210 37 0 0 chr5 129114710 129114737 -23422522 + (TCTA)n Simple_repeat Simple_repeat 3 29 0 2 1570 6811 162 47 12 chr5 129114737 129115901 -23421358 - MERVL_2A-int LTR ERVL -2183 3578 2387 2 1570 1075 294 54 56 chr5 129115901 129116401 -23420858 + ERVL-int LTR ERVL 5259 5757 0 2 1570 519 264 40 8 chr5 129116403 129116529 -23420730 + MT2A LTR ERVL 13 142 -391 2 1570 277 284 370 24 chr5 129116598 129116759 -23420500 + MT2A LTR ERVL 268 488 -45 2 1570 342 0 0 0 chr5 129116759 129116797 -23420462 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1570 277 306 184 9 chr5 129116797 129116827 -23420432 + MT2A LTR ERVL 489 518 -15 2 1570 255 321 118 15 chr5 129116809 129116945 -23420314 + MLT1L LTR MaLR 270 419 -191 2 1570 248 336 15 85 chr5 129117119 129117249 -23420010 - MER5A1 DNA MER1_type -1 165 45 2 1570 666 180 0 0 chr5 129117366 129117477 -23419782 - B1_Mur3 SINE Alu -10 139 29 2 1570 1546 37 11 5 chr5 129117498 129117686 -23419573 - B2_Mm2 SINE B2 -4 191 3 2 1570 876 226 58 5 chr5 129117702 129117907 -23419352 + ID_B1 SINE B4 5 220 -4 2 1570 2253 82 12 60 chr5 129119220 129119555 -23417704 + ORR1A2 LTR MaLR 1 319 -8 2 1570 1171 171 17 69 chr5 129120267 129120499 -23416760 + ID_B1 SINE B4 5 224 0 2 1570 300 53 0 0 chr5 129120499 129120537 -23416722 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 2 1570 441 299 29 14 chr5 129120640 129120779 -23416480 + B4A SINE B4 148 288 -4 2 1570 770 109 92 0 chr5 129121037 129121156 -23416103 + B1_Mus1 SINE Alu 6 135 -13 2 1570 288 77 0 0 chr5 129121156 129121195 -23416064 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1570 417 196 4 0 chr5 129121234 129121317 -23415942 + B3A SINE B2 2 87 -129 2 1570 499 222 37 0 chr5 129121389 129121497 -23415762 - RSINE1 SINE B4 -51 114 3 2 1570 293 284 108 18 chr5 129121497 129121608 -23415651 - ID_B1 SINE B4 -2 222 102 2 1570 196 143 36 0 chr5 129122645 129122701 -23414558 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2 1570 334 239 36 24 chr5 129122735 129122902 -23414357 + (TAGA)n Simple_repeat Simple_repeat 2 170 0 2 1570 676 171 18 12 chr5 129123929 129124095 -23413164 + GA-rich Low_complexity Low_complexity 2 168 0 2 1570 236 167 0 0 chr5 129124175 129124217 -23413042 + Lx8 LINE L1 7421 7462 -11 2 1570 490 194 23 12 chr5 129125319 129125491 -23411768 + CT-rich Low_complexity Low_complexity 3 176 0 2 1570 462 330 43 63 chr5 129125884 129126139 -23411120 - MER121 Unknown Unknown -100 312 63 2 1570 315 331 0 29 chr5 129126750 129126890 -23410369 + CT-rich Low_complexity Low_complexity 3 138 0 2 1570 304 363 6 54 chr5 129126890 129127056 -23410203 - HAL1-3A_ME LINE L1 -417 2441 2284 2 1570 460 318 17 11 chr5 129127080 129127255 -23410004 + CT-rich Low_complexity Low_complexity 4 179 0 2 1570 398 296 247 58 chr5 129128613 129129069 -23408190 - RMER20B LTR ERVK -31 596 55 2 1570 1897 149 21 26 chr5 129129560 129129957 -23407302 - ORR1B2 LTR MaLR 0 378 3 2 1570 741 284 52 5 chr5 129130267 129130458 -23406801 + B4A SINE B4 2 201 -91 2 1570 857 180 0 14 chr5 129130930 129131071 -23406188 - B1_Mur2 SINE Alu 0 149 11 2 1570 589 262 48 151 chr5 129131068 129131232 -23406027 - B4 SINE B4 -66 226 81 2 1570 1067 193 0 48 chr5 129131232 129131439 -23405820 - B3A SINE B2 0 198 2 2 1570 589 262 48 151 chr5 129131439 129131526 -23405733 - B4 SINE B4 -212 80 1 2 1570 315 160 0 0 chr5 129131549 129131624 -23405635 + GA-rich Low_complexity Low_complexity 2 76 0 2 1570 416 374 43 35 chr5 129131746 129132001 -23405258 - L1MB7 LINE L1 -288 5896 5640 2 1570 203 0 37 0 chr5 129132353 129132380 -23404879 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2 1570 734 252 0 7 chr5 129132384 129132528 -23404731 - B1_Mur1 SINE Alu -6 143 1 2 1570 270 0 0 0 chr5 129132575 129132605 -23404654 + (TC)n Simple_repeat Simple_repeat 1 30 0 2 1570 378 0 0 0 chr5 129132605 129132646 -23404613 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1570 295 239 0 15 chr5 129132667 129132735 -23404524 - RSINE1 SINE B4 -95 70 4 2 1570 623 67 0 11 chr5 129132827 129132917 -23404342 + (TTTC)n Simple_repeat Simple_repeat 3 91 0 2 1570 429 20 0 0 chr5 129132967 129133017 -23404242 + (TC)n Simple_repeat Simple_repeat 2 51 0 2 1570 694 273 39 7 chr5 129133491 129133646 -23403613 + B3A SINE B2 1 160 -38 2 1570 261 0 0 0 chr5 129133661 129133690 -23403569 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 1570 333 0 0 0 chr5 129133690 129133726 -23403533 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 1570 217 219 0 0 chr5 129134161 129134202 -23403057 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1570 886 232 23 82 chr5 129134265 129134529 -23402730 - B4 SINE B4 -18 274 27 2 1570 410 243 84 0 chr5 129135646 129135753 -23401506 - B3 SINE B2 -3 213 98 2 1570 2184 168 64 7 chr5 129135753 129136258 -23401001 - RMER4B LTR ERVK 0 585 17 2 1570 408 200 77 39 chr5 129136261 129136365 -23400894 - B3 SINE B2 -108 108 1 2 1570 288 286 61 10 chr5 129136542 129136641 -23400618 - RMER15 LTR ERVL -50 525 422 2 1570 451 281 72 35 chr5 129138045 129138201 -23399058 - B3A SINE B2 -62 154 1 2 1570 738 291 0 0 chr5 129138306 129138447 -23398812 + RSINE1 SINE B4 14 154 -11 2 1570 426 249 0 4 chr5 129138448 129138730 -23398529 + (TG)n Simple_repeat Simple_repeat 1 280 0 2 1570 742 216 7 0 chr5 129139209 129139357 -23397902 + B1F1 SINE Alu 1 149 0 2 1570 742 150 6 39 chr5 129139687 129139796 -23397463 + (CATA)n Simple_repeat Simple_repeat 2 109 0 2 1570 4740 64 5 0 chr5 129139796 129140377 -23396882 + MT2B2 LTR ERVL 1 584 0 2 1570 742 150 6 39 chr5 129140377 129140447 -23396812 + (CATA)n Simple_repeat Simple_repeat 2 67 0 2 1570 477 0 0 0 chr5 129140469 129140522 -23396737 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1570 230 217 0 0 chr5 129140522 129140568 -23396691 - tRNA-Ala-GCY_ tRNA tRNA -19 56 11 3 1570 500 299 37 31 chr5 129140593 129140755 -23396504 + RSINE1 SINE B4 3 165 0 3 1570 232 161 36 24 chr5 129140756 129140839 -23396420 + (CA)n Simple_repeat Simple_repeat 1 84 0 3 1570 27 29 0 0 chr5 129140840 129140874 -23396385 + AT_rich Low_complexity Low_complexity 1 34 0 3 1570 739 207 5 132 chr5 129141337 129141526 -23395733 + RSINE1 SINE B4 1 165 0 3 1570 1000 242 14 5 chr5 129141746 129141954 -23395305 - ID_B1 SINE B4 -14 210 1 3 1570 351 0 0 0 chr5 129142018 129142057 -23395202 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1570 660 223 13 51 chr5 129142060 129142216 -23395043 - B3A SINE B2 -47 151 2 3 1570 402 293 106 32 chr5 129142859 129143141 -23394118 - Charlie1a DNA MER1_type -37 1418 1116 3 1570 786 193 35 29 chr5 129143280 129143451 -23393808 - B3 SINE B2 0 216 45 3 1570 203 108 54 0 chr5 129143904 129143941 -23393318 + C-rich Low_complexity Low_complexity 3 41 0 3 1570 369 0 0 0 chr5 129144397 129144438 -23392821 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1570 333 0 0 0 chr5 129144582 129144619 -23392640 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1570 2039 160 62 23 chr5 129145569 129145959 -23391300 - MTB_Mm LTR MaLR 0 407 3 3 1570 414 206 0 0 chr5 129145999 129146067 -23391192 - ID4_ SINE ID -14 69 2 3 1570 324 336 130 41 chr5 129146104 129146175 -23391084 - B4 SINE B4 0 292 157 3 1570 240 300 31 62 chr5 129146175 129146271 -23390988 - PB1D9 SINE Alu -6 114 22 3 1570 324 336 130 41 chr5 129146271 129146349 -23390910 - B4 SINE B4 0 156 2 3 1570 227 300 58 0 chr5 129146365 129146454 -23390805 - PB1D10 SINE Alu -8 141 42 3 1570 261 0 0 0 chr5 129147141 129147170 -23390089 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1570 203 229 0 0 chr5 129147170 129147205 -23390054 + (CG)n Simple_repeat Simple_repeat 2 36 0 3 1570 340 255 213 0 chr5 129147648 129147742 -23389517 - RSINE1 SINE B4 -39 126 13 3 1570 359 326 169 20 chr5 129148258 129148608 -23388651 - L2 LINE L2 -346 3073 2672 3 1570 336 234 9 138 chr5 129148611 129148720 -23388539 + PB1D10 SINE Alu 2 96 -21 3 1570 219 306 48 0 chr5 129148720 129148782 -23388477 + ID4_ SINE ID 3 67 -16 3 1570 501 151 0 0 chr5 129148821 129148907 -23388352 + (CA)n Simple_repeat Simple_repeat 2 87 0 3 1570 351 0 0 0 chr5 129149131 129149170 -23388089 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1570 633 262 178 0 chr5 129149341 129149532 -23387727 + MTEb LTR MaLR 1 225 -154 3 1570 2421 98 60 3 chr5 129149538 129149885 -23387374 - ORR1B1 LTR MaLR 0 394 28 3 1570 1257 99 15 25 chr5 129150003 129150200 -23387059 - B2_Mm2 SINE B2 0 195 1 3 1570 687 338 78 43 chr5 129150545 129150891 -23386368 + ORR1E LTR MaLR 1 358 -1 3 1570 396 293 93 44 chr5 129151040 129151222 -23386037 - MLT1C LTR MaLR -203 264 74 3 1570 351 310 142 17 chr5 129152223 129152525 -23384734 + MLT1D LTR MaLR 24 363 -142 3 1570 184 246 50 50 chr5 129152818 129152878 -23384381 + MIR SINE MIR 60 119 -143 3 1570 409 242 31 31 chr5 129153494 129153592 -23383667 + RSINE1 SINE B4 3 100 -65 3 1570 628 164 101 29 chr5 129153597 129153735 -23383524 + B1_Mur1 SINE Alu 2 149 0 3 1570 367 270 8 83 chr5 129154068 129154189 -23383070 + ID_B1 SINE B4 81 192 -32 3 1570 858 142 105 28 chr5 129154211 129154392 -23382867 - B2_Mm2 SINE B2 0 195 1 3 1570 340 248 126 47 chr5 129155821 129155948 -23381311 + L2b LINE L2 3228 3364 -11 3 1570 760 218 13 39 chr5 129157110 129157263 -23379996 + B1_Mur1 SINE Alu 1 149 0 3 1570 599 292 6 13 chr5 129157655 129157811 -23379448 + B3A SINE B2 1 155 -43 3 1570 213 346 96 55 chr5 129158240 129158552 -23378707 + L2b LINE L2 2916 3240 -135 3 1570 2081 172 25 40 chr5 129158622 129159021 -23378238 + MTD LTR MaLR 11 403 -16 3 1570 2380 80 3 109 chr5 129159326 129159692 -23377567 - ORR1A2 LTR MaLR 0 327 1 3 1570 188 67 33 0 chr5 129160056 129160086 -23377173 + (CCCCCT)n Simple_repeat Simple_repeat 5 35 0 3 1570 660 278 39 58 chr5 129160411 129160615 -23376644 - RMER5 LTR ERV1 0 534 335 3 1570 1779 181 71 20 chr5 129160615 129160965 -23376294 + ORR1D1 LTR MaLR 1 368 -6 3 1570 3033 188 12 44 chr5 129160990 129161584 -23375675 + RMER15 LTR ERVL 1 575 0 3 1570 227 85 356 0 chr5 129161634 129161693 -23375566 - RMER5 LTR ERV1 -260 274 195 3 1570 506 306 77 11 chr5 129161693 129161875 -23375384 + B3A SINE B2 3 196 -2 3 1570 1050 109 156 11 chr5 129161924 129162110 -23375149 - RLTR44E LTR ERVK -2 447 235 3 1570 467 252 92 30 chr5 129162135 129162236 -23375023 - Lx8 LINE L1 -136 7337 7233 3 1570 396 0 0 0 chr5 129162236 129162280 -23374979 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1570 467 252 92 30 chr5 129162280 129162342 -23374917 - Lx8 LINE L1 -241 7232 7165 3 1570 2689 101 48 13 chr5 129163762 129164155 -23373104 + MTB_Mm LTR MaLR 1 407 0 3 1570 206 308 0 28 chr5 129164229 129164293 -23372966 + (TATG)n Simple_repeat Simple_repeat 2 63 0 3 1570 2068 171 8 66 chr5 129164293 129164687 -23372572 + ORR1D1 LTR MaLR 4 374 0 3 1570 206 308 0 28 chr5 129164687 129164729 -23372530 + (TATG)n Simple_repeat Simple_repeat 4 45 0 3 1570 1081 238 266 31 chr5 129166658 129167082 -23370177 - RLTR11A LTR ERVK -4 524 1 3 1570 370 244 0 85 chr5 129167489 129167583 -23369676 + B4 SINE B4 205 290 -2 3 1570 907 265 44 81 chr5 129167597 129167956 -23369303 - MTD LTR MaLR -41 359 2 3 1570 245 234 0 0 chr5 129168006 129168053 -23369206 + L1M3 LINE L1 5653 5699 -472 3 1570 294 29 0 0 chr5 129168184 129168219 -23369040 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1570 23 68 0 0 chr5 129168441 129168485 -23368774 + AT_rich Low_complexity Low_complexity 1 44 0 3 1570 1396 128 27 9 chr5 129168538 129168759 -23368500 + URR1B DNA MER1_type 1 225 0 3 1570 466 326 20 91 chr5 129168863 129169038 -23368221 - B3A SINE B2 0 198 38 3 1570 690 153 520 0 chr5 129169038 129169186 -23368073 + URR1B DNA MER1_type 1 225 0 3 1570 429 54 0 0 chr5 129169335 129169391 -23367868 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1570 486 33 0 0 chr5 129169391 129169450 -23367809 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 3 1570 2269 104 66 6 chr5 129169482 129169829 -23367430 - RLTR9A LTR ERVK 0 368 1 3 1570 523 206 55 18 chr5 129169856 129169965 -23367294 + ORR1E LTR MaLR 179 291 -68 3 1570 906 243 75 39 chr5 129170056 129170364 -23366895 + Lx8 LINE L1 7155 7473 0 3 1570 788 194 7 20 chr5 129170389 129170536 -23366723 + B1_Mur2 SINE Alu 5 149 0 3 1570 186 71 0 0 chr5 129170548 129170576 -23366683 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3 1570 246 263 13 13 chr5 129170911 129171011 -23366248 + (TATG)n Simple_repeat Simple_repeat 1 100 0 3 1570 777 247 23 6 chr5 129171018 129171193 -23366066 + B3 SINE B2 36 213 -3 3 1570 1710 138 141 57 chr5 129171228 129171582 -23365677 + ORR1C2 LTR MaLR 1 384 0 3 1570 606 215 16 24 chr5 129172130 129172254 -23365005 + URR1B DNA MER1_type 1 123 -102 3 1570 213 94 0 0 chr5 129172586 129172618 -23364641 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 3 1570 189 85 20 78 chr5 129172804 129172836 -23364423 + polypurine Low_complexity Low_complexity 1 29 0 3 1570 973 139 6 6 chr5 129172836 129173010 -23364249 + GA-rich Low_complexity Low_complexity 2 175 0 3 1570 189 85 20 78 chr5 129173010 129173028 -23364231 + polypurine Low_complexity Low_complexity 30 48 0 3 1570 1108 213 62 27 chr5 129174219 129174479 -23362780 + MTEb LTR MaLR 107 375 -4 3 1570 197 342 73 42 chr5 129174614 129174806 -23362453 + L2a LINE L2 2731 2928 -491 3 1570 327 367 192 36 chr5 129174830 129174925 -23362334 + L2a LINE L2 3012 3112 -314 3 1570 2145 162 62 22 chr5 129174925 129175329 -23361930 + MTC LTR MaLR 2 421 0 3 1570 327 367 192 36 chr5 129175329 129175450 -23361809 + L2a LINE L2 3113 3255 -171 3 1570 396 0 0 0 chr5 129175450 129175494 -23361765 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1570 327 367 192 36 chr5 129175494 129175635 -23361624 + L2a LINE L2 3256 3426 0 3 1570 21 36 0 0 chr5 129176713 129176741 -23360518 + AT_rich Low_complexity Low_complexity 1 28 0 3 1570 1042 251 85 27 chr5 129176926 129177273 -23359986 + MTD LTR MaLR 6 405 -14 3 1570 415 339 60 6 chr5 129177435 129177601 -23359658 - MLT1C LTR MaLR 0 467 293 3 1570 2451 141 34 27 chr5 129178278 129178687 -23358572 + MTC LTR MaLR 3 414 -7 3 1570 3342 16 39 3 chr5 129178729 129179111 -23358148 + MTA_Mm LTR MaLR 1 396 0 3 1570 272 304 25 81 chr5 129179291 129179357 -23357902 - MIRb SINE MIR -39 229 168 3 1570 423 0 0 0 chr5 129179357 129179404 -23357855 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 3 1570 570 246 7 35 chr5 129179404 129179547 -23357712 - B1_Mur1 SINE Alu -10 139 1 3 1570 272 318 28 69 chr5 129179547 129179671 -23357588 - MIRb SINE MIR -98 170 45 3 1570 264 122 0 0 chr5 129179672 129179713 -23357546 + (TTC)n Simple_repeat Simple_repeat 2 42 0 3 1570 27 29 0 0 chr5 129180420 129180454 -23356805 + AT_rich Low_complexity Low_complexity 1 34 0 3 1570 8430 30 1 2 chr5 129180627 129181599 -23355660 - L1Md_T LINE L1 -1 6581 5611 3 1570 265 244 136 121 chr5 129181643 129181673 -23355586 + ID_B1 SINE B4 80 221 -3 3 1570 302 227 64 118 chr5 129181673 129181783 -23355476 + PB1 SINE Alu 22 125 -2 3 1570 248 255 0 0 chr5 129181830 129181881 -23355378 + ID4 SINE ID 3 53 -30 3 1570 660 257 26 16 chr5 129182133 129182323 -23354936 - HAL1-2a_MD LINE L1 -494 2530 2339 3 1570 471 289 15 83 chr5 129182323 129182527 -23354732 - HAL1-2a_MD LINE L1 -509 2515 2326 3 1570 398 239 7 10 chr5 129183612 129183730 -23353529 - B3A SINE B2 -8 208 88 3 1570 435 244 89 0 chr5 129184193 129184283 -23352976 - B3A SINE B2 -100 98 1 3 1570 1380 236 70 14 chr5 129185128 129185485 -23351774 + MTEa LTR MaLR 3 379 0 4 1570 693 296 69 60 chr5 129185559 129185672 -23351587 - L1MA4A LINE L1 -254 6046 5931 4 1570 228 86 0 0 chr5 129185672 129185707 -23351552 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1570 726 295 55 52 chr5 129185707 129186010 -23351249 - L1MA4A LINE L1 -370 5930 5626 4 1570 2199 119 0 49 chr5 129186010 129186354 -23350905 + ORR1A2 LTR MaLR 1 327 0 4 1570 726 294 54 52 chr5 129186354 129186485 -23350774 - L1MA4A LINE L1 -678 5625 5493 4 1570 241 243 14 14 chr5 129186485 129186556 -23350703 - MER63D DNA AcHobo -948 113 43 4 1570 715 206 116 0 chr5 129187494 129187649 -23349610 - B3A SINE B2 -21 177 5 4 1570 522 180 0 0 chr5 129187946 129188046 -23349213 + (TA)n Simple_repeat Simple_repeat 1 100 0 4 1570 313 357 9 9 chr5 129188426 129188539 -23348720 - PB1D7 SINE Alu -1 119 7 4 1570 1178 99 23 11 chr5 129188836 129189010 -23348249 - B2_Mm2 SINE B2 -18 177 2 4 1570 276 185 0 0 chr5 129189505 129189559 -23347700 + (CCA)n Simple_repeat Simple_repeat 3 56 0 4 1570 1558 166 196 11 chr5 129189559 129189573 -23347686 + MTD LTR MaLR 1 14 -405 4 1570 306 0 0 0 chr5 129189573 129189607 -23347652 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 4 1570 1558 166 196 11 chr5 129189607 129189945 -23347314 + MTD LTR MaLR 15 418 -1 4 1570 468 0 0 0 chr5 129190679 129190731 -23346528 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1570 257 20 59 20 chr5 129190900 129190951 -23346308 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 4 1570 1319 269 3 29 chr5 129192083 129192393 -23344866 + MTE2b LTR MaLR 4 305 -74 4 1570 21 0 0 0 chr5 129193095 129193116 -23344143 + AT_rich Low_complexity Low_complexity 1 21 0 4 1570 1094 222 9 0 chr5 129193120 129193332 -23343927 - B3 SINE B2 0 216 3 4 1570 224 0 0 61 chr5 129193447 129193480 -23343779 + (CAAAAA)n Simple_repeat Simple_repeat 6 36 0 4 1570 2877 153 114 64 chr5 129193503 129194083 -23343176 + RMER19C LTR ERVK 1 609 -2 4 1570 433 241 0 36 chr5 129194083 129194195 -23343064 + PB1D10 SINE Alu 3 110 -7 4 1570 693 36 0 0 chr5 129194562 129194646 -23342613 + (GAA)n Simple_repeat Simple_repeat 2 85 0 4 1570 2799 126 92 14 chr5 129194789 129194858 -23342401 - RLTR11A LTR ERVK 0 528 459 4 1570 189 0 0 0 chr5 129194858 129194879 -23342380 + (CA)n Simple_repeat Simple_repeat 2 22 0 4 1570 2799 126 92 14 chr5 129194879 129195299 -23341960 - RLTR11A LTR ERVK -70 458 2 4 1570 1032 169 22 0 chr5 129195344 129195522 -23341737 - B3A SINE B2 -16 182 1 4 1570 206 229 0 20 chr5 129195544 129195593 -23341666 + CT-rich Low_complexity Low_complexity 3 50 0 4 1570 702 170 291 6 chr5 129195597 129195772 -23341487 + URR1B DNA MER1_type 1 225 0 4 1570 753 275 26 0 chr5 129195854 129196083 -23341176 - L1MA4 LINE L1 -371 5929 5695 4 1570 435 211 0 0 chr5 129196381 129196457 -23340802 - B1F1 SINE Alu -73 76 1 4 1570 319 229 0 41 chr5 129196396 129196469 -23340790 - B4A SINE B4 -146 146 77 4 1570 1046 122 0 0 chr5 129196472 129196619 -23340640 + B1_Mus1 SINE Alu 1 147 -1 4 1570 240 163 0 0 chr5 129197239 129197282 -23339977 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1570 261 0 0 0 chr5 129197527 129197556 -23339703 + (GGGTG)n Simple_repeat Simple_repeat 4 32 0 4 1570 1326 149 18 5 chr5 129197849 129198072 -23339187 + URR1A DNA MER1_type 1 226 0 4 1570 1856 141 48 63 chr5 129198432 129198766 -23338493 - ORR1A4 LTR MaLR 0 329 1 4 1570 624 234 47 8 chr5 129199032 129199161 -23338098 - RSINE1 SINE B4 -28 137 4 4 1570 680 259 45 60 chr5 129199483 129199684 -23337575 - B3A SINE B2 0 198 1 4 1570 356 347 74 31 chr5 129199692 129199734 -23337525 + Tigger9b DNA MER2_type 159 198 -426 4 1570 350 42 0 20 chr5 129199734 129199783 -23337476 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1570 356 347 74 31 chr5 129199783 129199996 -23337263 + Tigger9b DNA MER2_type 199 424 -200 4 1570 833 211 26 0 chr5 129200148 129200300 -23336959 - B3A SINE B2 -41 157 2 4 1570 815 296 32 27 chr5 129200319 129200538 -23336721 - ID_B1 SINE B4 -3 221 2 4 1570 432 0 0 0 chr5 129201491 129201539 -23335720 + (CA)n Simple_repeat Simple_repeat 2 49 0 4 1570 413 289 26 0 chr5 129201682 129201796 -23335463 + MER20 DNA MER1_type 7 123 -96 4 1570 351 0 0 0 chr5 129202652 129202691 -23334568 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1570 1651 229 34 17 chr5 129204404 129204755 -23332504 + ORR1D2 LTR MaLR 6 362 -8 4 1570 466 198 0 0 chr5 129205495 129205576 -23331683 + B4A SINE B4 2 82 -210 4 1570 380 83 0 32 chr5 129205576 129205638 -23331621 + (TATG)n Simple_repeat Simple_repeat 3 62 0 4 1570 282 281 39 77 chr5 129205640 129205744 -23331515 + B1_Mus2 SINE Alu 4 103 -44 4 1570 701 259 6 6 chr5 129205749 129205908 -23331351 + RSINE1 SINE B4 4 162 -3 4 1570 189 0 0 0 chr5 129205929 129205950 -23331309 + (TAA)n Simple_repeat Simple_repeat 2 22 0 4 1570 491 241 43 0 chr5 129206153 129206269 -23330990 + ID_B1 SINE B4 86 206 -18 4 1570 1355 297 96 31 chr5 129206308 129206982 -23330277 - Lx8 LINE L1 -8 7465 6748 4 1570 273 299 43 75 chr5 129207137 129207231 -23330028 - L1MC1 LINE L1 -26 6318 6224 4 1570 747 282 119 39 chr5 129207258 129207694 -23329565 - L1MC1 LINE L1 -173 6160 5690 4 1570 330 26 0 0 chr5 129207704 129207743 -23329516 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4 1570 1138 73 7 0 chr5 129207743 129207883 -23329376 - B2_Mm2 SINE B2 -22 173 33 4 1570 183 42 0 0 chr5 129207883 129207907 -23329352 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4 1570 1120 72 0 0 chr5 129207907 129208045 -23329214 - B1_Mus1 SINE Alu -9 139 2 4 1570 1412 191 118 92 chr5 129208118 129208509 -23328750 + MTD LTR MaLR 5 405 -14 4 1570 244 217 145 0 chr5 129208516 129208585 -23328674 - L1MC1 LINE L1 -695 5638 5560 4 1570 678 258 10 63 chr5 129208684 129208891 -23328368 + B3A SINE B2 2 197 -1 4 1570 1144 88 0 0 chr5 129209007 129209154 -23328105 - B1_Mus1 SINE Alu 0 148 2 4 1570 401 0 0 20 chr5 129210304 129210354 -23326905 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1570 226 211 0 0 chr5 129210361 129210413 -23326846 + C-rich Low_complexity Low_complexity 1 52 0 4 1570 773 240 37 33 chr5 129210497 129210712 -23326547 - B3 SINE B2 0 216 1 4 1570 295 23 22 22 chr5 129210756 129210801 -23326458 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1570 527 204 50 118 chr5 129210821 129210982 -23326277 - RSINE1 SINE B4 -13 152 3 4 1570 225 248 8 15 chr5 129211401 129211532 -23325727 + CT-rich Low_complexity Low_complexity 1 130 0 4 1570 369 173 40 13 chr5 129211561 129211637 -23325622 + B3 SINE B2 137 214 -2 4 1570 860 180 44 84 chr5 129212200 129212425 -23324834 + B3 SINE B2 1 216 0 4 1570 767 207 98 27 chr5 129212445 129212629 -23324630 + B3A SINE B2 1 197 -1 4 1570 789 250 30 5 chr5 129212766 129212967 -23324292 - B3 SINE B2 -10 206 1 4 1570 186 43 0 0 chr5 129213053 129213076 -23324183 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1570 204 229 40 67 chr5 129213098 129213173 -23324086 + L3 LINE CR1 2981 3053 -1436 4 1570 1119 75 0 27 chr5 129213590 129213740 -23323519 + B1_Mus2 SINE Alu 1 146 -1 4 1570 208 191 21 0 chr5 129213746 129213793 -23323466 + (TTTAA)n Simple_repeat Simple_repeat 3 50 0 4 1570 180 0 0 0 chr5 129214040 129214060 -23323199 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1570 1082 248 16 43 chr5 129214102 129214359 -23322900 - B4 SINE B4 -14 278 29 4 1570 450 0 0 0 chr5 129214642 129214692 -23322567 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1570 280 353 62 37 chr5 129214993 129215237 -23322022 + RMER15 LTR ERVL 311 560 -15 4 1570 465 282 36 102 chr5 129217065 129217098 -23320161 - B3 SINE B2 -5 211 176 4 1570 408 97 0 0 chr5 129217098 129217160 -23320099 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1570 465 282 36 102 chr5 129217160 129217351 -23319908 - B3 SINE B2 -41 175 2 4 1570 724 218 87 82 chr5 129217392 129217587 -23319672 - B3A SINE B2 0 198 3 4 1570 264 309 175 18 chr5 129217824 129217995 -23319264 + B3A SINE B2 1 198 0 4 1570 1262 252 31 28 chr5 129218023 129218313 -23318946 + B4A SINE B4 1 291 -1 4 1570 396 0 0 0 chr5 129218319 129218363 -23318896 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1570 486 327 115 19 chr5 129218809 129219183 -23318076 - L1MB7 LINE L1 -262 5922 5513 4 1570 249 222 74 0 chr5 129219315 129219369 -23317890 - B4A SINE B4 -203 89 32 4 1570 301 354 157 49 chr5 129219439 129219867 -23317392 - L1MB7 LINE L1 -796 5350 4877 4 1570 386 324 67 33 chr5 129221988 129222138 -23315121 - RSINE1 SINE B4 -8 157 3 4 1570 341 202 38 63 chr5 129222274 129222399 -23314860 - B2_Mm2 SINE B2 -95 121 2 4 1570 275 182 72 43 chr5 129222452 129222521 -23314738 - B3 SINE B2 -8 208 138 4 1570 952 175 33 26 chr5 129222520 129222721 -23314538 - ORR1A4 LTR MaLR -31 348 176 4 1570 754 115 35 9 chr5 129222855 129222969 -23314290 + B1_Mus1 SINE Alu 10 126 -22 4 1570 331 368 105 43 chr5 129223021 129223325 -23313934 - LTR41B LTR ERVL -198 560 238 4 1570 207 69 0 0 chr5 129224002 129224031 -23313228 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1570 285 29 0 0 chr5 129224124 129224158 -23313101 + (TCTCTG)n Simple_repeat Simple_repeat 1 34 0 4 1570 609 299 88 88 chr5 129224411 129224598 -23312661 - MLT1C LTR MaLR -107 360 169 4 1570 449 208 245 117 chr5 129224598 129224794 -23312465 - ID_B1 SINE B4 -3 221 1 4 1570 609 299 88 88 chr5 129224794 129224958 -23312301 - MLT1C LTR MaLR -299 168 9 4 1570 548 125 10 0 chr5 129225306 129225402 -23311857 + (TCC)n Simple_repeat Simple_repeat 3 99 0 4 1570 314 217 14 14 chr5 129225427 129225497 -23311762 + PB1D10 SINE Alu 1 70 -47 4 1570 2537 170 169 57 chr5 129225498 129226047 -23311212 + RMER19C LTR ERVK 1 611 0 4 1570 383 188 101 0 chr5 129226049 129226118 -23311141 - tRNA-Lys-AAG tRNA tRNA 0 76 1 4 1570 2193 117 7 3 chr5 129226277 129226587 -23310672 - RLTR10E LTR ERVK 0 311 1 4 1570 253 377 34 55 chr5 129226719 129226865 -23310394 + B1F SINE Alu 5 147 -2 5 1570 891 0 0 0 chr5 129227310 129227409 -23309850 + (GAGAA)n Simple_repeat Simple_repeat 5 103 0 5 1570 1048 71 18 12 chr5 129227526 129227696 -23309563 + (TTC)n Simple_repeat Simple_repeat 2 172 0 5 1570 38585 27 2 6 chr5 129227696 129233879 -23303380 - L1Md_T LINE L1 -3 6579 423 5 1570 594 0 0 0 chr5 129233879 129233945 -23303314 + (CTG)n Simple_repeat Simple_repeat 1 66 0 5 1570 1016 108 0 6 chr5 129233945 129234103 -23303156 + (TTC)n Simple_repeat Simple_repeat 1 157 0 5 1570 568 159 30 24 chr5 129234117 129234199 -23303060 + polypyrimidine Low_complexity Low_complexity 87 168 0 5 1570 1208 61 6 16 chr5 129234199 129234381 -23302878 + (TTC)n Simple_repeat Simple_repeat 1 180 0 5 1570 568 159 30 24 chr5 129234381 129234465 -23302794 + polypyrimidine Low_complexity Low_complexity 2 86 0 5 1570 289 198 25 0 chr5 129234465 129234546 -23302713 + CT-rich Low_complexity Low_complexity 4 86 0 5 1570 1159 82 0 7 chr5 129234546 129234694 -23302565 - B1_Mus2 SINE Alu 0 147 1 5 1570 367 288 8 51 chr5 129234898 129235015 -23302244 + PB1D9 SINE Alu 8 119 -1 5 1570 867 254 6 6 chr5 129235024 129235198 -23302061 + B3A SINE B2 2 175 -23 5 1570 556 258 85 75 chr5 129235245 129235446 -23301813 + B3 SINE B2 1 203 -13 5 1570 253 257 13 26 chr5 129235686 129235762 -23301497 + MTE2a LTR MaLR 39 113 -266 5 1570 246 307 27 0 chr5 129235974 129236047 -23301212 - B4A SINE B4 -53 239 165 5 1570 490 157 104 0 chr5 129236047 129236162 -23301097 + ORR1A2 LTR MaLR 1 127 -219 5 1570 695 80 90 0 chr5 129236158 129236258 -23301001 + B1_Mm SINE Alu 38 146 -1 5 1570 1764 94 0 13 chr5 129236284 129236522 -23300737 + ORR1A2 LTR MaLR 93 327 0 5 1570 484 243 79 22 chr5 129236522 129236661 -23300598 - B4A SINE B4 -141 151 5 5 1570 288 0 0 0 chr5 129236935 129236967 -23300292 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 5 1571 205 171 0 0 chr5 129237906 129237941 -23299318 + GA-rich Low_complexity Low_complexity 1 35 0 5 1571 3242 61 0 5 chr5 129237959 129238357 -23298902 - MTA_Mm LTR MaLR 0 396 1 5 1571 1111 246 15 112 chr5 129238647 129238986 -23298273 + ORR1E LTR MaLR 54 359 0 5 1571 231 36 0 0 chr5 129239216 129239244 -23298015 + (TA)n Simple_repeat Simple_repeat 2 29 0 5 1571 223 283 126 32 chr5 129239423 129239518 -23297741 - PB1D10 SINE Alu -13 104 1 5 1571 354 23 0 0 chr5 129239525 129239568 -23297691 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1571 393 264 9 19 chr5 129239615 129239723 -23297536 - PB1D10 SINE Alu -7 110 4 5 1571 609 214 103 0 chr5 129240159 129240276 -23296983 + B1F2 SINE Alu 21 149 0 5 1571 332 246 186 23 chr5 129240376 129240505 -23296754 - B4A SINE B4 -48 244 95 5 1571 627 167 17 34 chr5 129240392 129240510 -23296749 - PB1D9 SINE Alu 0 120 5 5 1571 451 11 91 0 chr5 129244353 129244441 -23292818 + (TG)n Simple_repeat Simple_repeat 1 96 0 5 1571 702 261 57 0 chr5 129244443 129244619 -23292640 - B3 SINE B2 -30 186 1 5 1571 307 196 26 64 chr5 129245060 129245146 -23292113 + ID4 SINE ID 1 78 -5 5 1571 262 246 40 40 chr5 129245082 129245158 -23292101 + ID_B1 SINE B4 16 91 -133 5 1571 954 78 318 23 chr5 129246233 129246406 -23290853 + URR1B DNA MER1_type 1 224 -1 5 1571 432 111 0 0 chr5 129247039 129247120 -23290139 + (TG)n Simple_repeat Simple_repeat 2 82 0 5 1571 702 274 80 48 chr5 129248331 129248580 -23288679 + B4A SINE B4 36 292 0 5 1571 507 206 42 8 chr5 129252772 129252883 -23284376 - PB1D9 SINE Alu -1 126 11 5 1571 217 261 21 74 chr5 129252812 129252907 -23284352 - B4A SINE B4 -123 169 80 5 1571 405 0 0 0 chr5 129255153 129255198 -23282061 + (CA)n Simple_repeat Simple_repeat 2 46 0 5 1571 261 139 0 0 chr5 129256004 129256047 -23281212 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1571 306 0 0 0 chr5 129258041 129258075 -23279184 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1571 189 0 0 0 chr5 129258795 129258816 -23278443 + (TG)n Simple_repeat Simple_repeat 2 22 0 5 1571 351 0 0 0 chr5 129259493 129259532 -23277727 + (CTG)n Simple_repeat Simple_repeat 1 39 0 5 1571 189 0 0 0 chr5 129260297 129260318 -23276941 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 5 1571 432 0 0 0 chr5 129260507 129260555 -23276704 + (TC)n Simple_repeat Simple_repeat 2 49 0 5 1571 560 254 0 0 chr5 129260931 129261041 -23276218 + PB1D10 SINE Alu 2 111 -6 5 1571 321 135 0 0 chr5 129261044 129261096 -23276163 + (A)n Simple_repeat Simple_repeat 1 52 0 5 1571 228 276 122 19 chr5 129262502 129262609 -23274650 + MTEb LTR MaLR 5 122 -257 5 1571 269 300 0 0 chr5 129267567 129267627 -23269632 - ID4 SINE ID -23 60 1 5 1571 250 247 219 0 chr5 129267636 129267709 -23269550 - PB1 SINE Alu -4 123 35 5 1571 301 212 13 38 chr5 129267841 129267931 -23269328 + B1F SINE Alu 57 144 -5 5 1571 291 242 76 53 chr5 129268279 129268410 -23268849 + RSINE1 SINE B4 10 143 -22 5 1571 403 335 152 24 chr5 129268511 129268841 -23268418 + L1MB5 LINE L1 5479 5850 -324 5 1571 1123 114 12 0 chr5 129269538 129269704 -23267555 - B2_Mm2 SINE B2 -26 169 2 5 1571 320 370 62 69 chr5 129270293 129270697 -23266562 + L1MEd LINE L1 811 1211 -4908 5 1571 3001 289 94 87 chr5 129270708 129272770 -23264489 + L1_Mur3 LINE L1 1623 3742 -2138 5 1571 228 67 0 0 chr5 129272770 129272800 -23264459 + (TG)n Simple_repeat Simple_repeat 2 31 0 5 1571 3001 289 94 87 chr5 129272800 129273440 -23263819 + L1_Mur3 LINE L1 3743 4344 -1536 5 1571 247 284 0 15 chr5 129273454 129273522 -23263737 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 5 1571 301 283 185 0 chr5 129273864 129273956 -23263303 + PB1D10 SINE Alu 1 109 -8 5 1571 357 24 0 0 chr5 129274347 129274389 -23262870 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1571 478 216 18 9 chr5 129274395 129274507 -23262752 - B3A SINE B2 -85 113 1 5 1571 1095 88 0 45 chr5 129274777 129274932 -23262327 + B1_Mus1 SINE Alu 1 148 0 5 1571 186 43 0 0 chr5 129274954 129274977 -23262282 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 1571 189 0 0 0 chr5 129274977 129274997 -23262262 + (CAAAG)n Simple_repeat Simple_repeat 3 23 0 5 1571 543 128 0 0 chr5 129275721 129275807 -23261452 + (TC)n Simple_repeat Simple_repeat 1 86 0 5 1571 498 33 0 0 chr5 129275973 129276033 -23261226 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1571 438 20 0 0 chr5 129277799 129277850 -23259409 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 5 1571 251 239 38 114 chr5 129278015 129278147 -23259112 + RMER15 LTR ERVL 9 130 -445 5 1571 1110 253 101 31 chr5 129278277 129278691 -23258568 + MERVL_2A-int LTR ERVL 1510 2012 -3749 5 1571 1031 206 190 32 chr5 129278691 129279007 -23258252 + MTD LTR MaLR 46 411 -8 5 1571 411 21 0 0 chr5 129280727 129280775 -23256484 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1571 816 201 62 47 chr5 129280936 129281129 -23256130 - B3A SINE B2 0 198 3 5 1571 303 333 142 13 chr5 129281180 129281335 -23255924 - MER2 DNA MER2_type -162 183 9 5 1571 552 227 0 0 chr5 129281344 129281494 -23255765 + (CA)n Simple_repeat Simple_repeat 1 150 0 5 1571 402 139 0 0 chr5 129281519 129281591 -23255668 + (CA)n Simple_repeat Simple_repeat 2 73 0 5 1571 1128 163 69 0 chr5 129281631 129281834 -23255425 - URR1A DNA MER1_type 0 226 10 5 1571 960 190 35 35 chr5 129282334 129282536 -23254723 + B3 SINE B2 4 205 -11 5 1571 2367 179 175 21 chr5 129283209 129283724 -23253535 + RMER19C LTR ERVK 18 611 0 5 1571 962 192 66 6 chr5 129284105 129284288 -23252971 - B3A SINE B2 0 198 5 5 1571 315 113 28 14 chr5 129285207 129285279 -23251980 + (TG)n Simple_repeat Simple_repeat 2 74 0 5 1571 513 47 0 0 chr5 129285680 129285744 -23251515 + (TC)n Simple_repeat Simple_repeat 1 64 0 5 1571 385 284 57 89 chr5 129285756 129286003 -23251256 + MTEb LTR MaLR 52 290 -89 5 1571 192 135 0 0 chr5 129287207 129287244 -23250015 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1571 33 0 0 0 chr5 129287542 129287575 -23249684 + AT_rich Low_complexity Low_complexity 1 33 0 5 1571 279 0 0 0 chr5 129290853 129290884 -23246375 + (TTTC)n Simple_repeat Simple_repeat 1 31 0 5 1571 1166 201 28 23 chr5 129290885 129291099 -23246160 - B3 SINE B2 0 216 2 5 1571 206 276 19 75 chr5 129291204 129291310 -23245949 + (TATATG)n Simple_repeat Simple_repeat 6 105 0 5 1571 351 312 6 38 chr5 129291663 129291846 -23245413 + (CATA)n Simple_repeat Simple_repeat 4 180 0 5 1571 238 307 7 48 chr5 129291900 129292047 -23245212 + (CATATA)n Simple_repeat Simple_repeat 3 143 0 5 1571 201 246 0 0 chr5 129292066 129292131 -23245128 + (CATA)n Simple_repeat Simple_repeat 4 68 0 5 1571 472 322 11 0 chr5 129292214 129292391 -23244868 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1571 1824 106 67 24 chr5 129294931 129295282 -23241977 + ORR1A4 LTR MaLR 1 394 0 5 1571 531 82 0 0 chr5 129295937 129296010 -23241249 + (TCCC)n Simple_repeat Simple_repeat 3 75 0 5 1571 1158 79 0 5 chr5 129296388 129296961 -23240298 + (GGA)n Simple_repeat Simple_repeat 1 570 0 5 1571 222 37 0 0 chr5 129297173 129297200 -23240059 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5 1571 206 365 123 31 chr5 129297333 129297463 -23239796 - MIRb SINE MIR -12 256 115 5 1571 325 347 77 40 chr5 129297769 129297991 -23239268 + L1MEf LINE L1 1537 1766 -4476 5 1571 414 53 0 0 chr5 129298237 129298294 -23238965 + (TA)n Simple_repeat Simple_repeat 2 58 0 5 1571 279 350 75 10 chr5 129298893 129299199 -23238060 + L1MEf LINE L1 2055 2380 -3786 5 1571 1173 64 0 0 chr5 129299788 129299928 -23237331 + B1_Mus2 SINE Alu 1 140 -7 5 1571 858 47 0 0 chr5 129299930 129300037 -23237222 + (GAA)n Simple_repeat Simple_repeat 2 108 0 5 1571 367 187 27 13 chr5 129300248 129300341 -23236918 + PB1D9 SINE Alu 2 105 -15 5 1571 694 210 88 19 chr5 129300369 129300529 -23236730 + Lx9 LINE L1 7291 7461 -183 6 1571 234 0 0 0 chr5 129300529 129300555 -23236704 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1571 231 167 64 0 chr5 129300556 129300634 -23236625 + Lx9 LINE L1 7556 7638 -6 6 1571 424 334 87 26 chr5 129300627 129300937 -23236322 + L1MEf LINE L1 3407 3735 -2411 5 1571 893 232 1 1 chr5 129300943 129301110 -23236149 + B3A SINE B2 1 165 -30 6 1571 393 86 0 0 chr5 129301110 129301168 -23236091 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1571 581 246 69 74 chr5 129301168 129301189 -23236070 + B2_Mm2 SINE B2 166 187 -8 6 1571 237 264 194 11 chr5 129301208 129301388 -23235871 + L1MEf LINE L1 3794 4006 -2140 5 1571 883 277 65 20 chr5 129301390 129301763 -23235496 - MTD LTR MaLR -1 378 1 6 1571 232 158 5 84 chr5 129303939 129304000 -23233259 + L2b LINE L2 3313 3407 -19 6 1571 210 208 0 0 chr5 129304315 129304368 -23232891 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1571 406 324 52 19 chr5 129304371 129304582 -23232677 + RMER12 LTR ERVK 771 988 -334 6 1571 288 309 12 0 chr5 129304582 129304666 -23232593 + (TG)n Simple_repeat Simple_repeat 1 85 0 6 1571 374 309 76 18 chr5 129304966 129305137 -23232122 - HAL1-2a_MD LINE L1 -499 2525 2345 6 1571 1014 219 25 0 chr5 129305750 129305946 -23231313 + B3 SINE B2 1 201 -15 6 1571 198 0 0 0 chr5 129305948 129305970 -23231289 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 6 1571 524 15 15 0 chr5 129306343 129306408 -23230851 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1571 789 222 87 10 chr5 129307204 129307400 -23229859 - B3 SINE B2 -4 212 2 6 1571 189 94 0 0 chr5 129307472 129307504 -23229755 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 6 1571 2211 91 45 17 chr5 129307546 129307904 -23229355 + ORR1B1 LTR MaLR 27 394 0 6 1571 43 0 0 0 chr5 129310281 129310324 -23226935 + AT_rich Low_complexity Low_complexity 1 43 0 6 1571 356 346 68 12 chr5 129310338 129310607 -23226652 + L1MA8 LINE L1 5818 6106 -206 6 1571 258 229 16 0 chr5 129310817 129310878 -23226381 - Lx8 LINE L1 -250 7223 7162 6 1571 360 288 59 0 chr5 129310883 129311001 -23226258 + MER68 LTR ERVL 170 294 -269 6 1571 408 260 29 0 chr5 129311650 129311754 -23225505 - PB1D7 SINE Alu 0 120 14 6 1571 817 314 31 24 chr5 129311769 129312056 -23225203 + B4 SINE B4 1 289 -3 6 1571 264 100 0 0 chr5 129313243 129313283 -23223976 + (TCC)n Simple_repeat Simple_repeat 3 42 0 6 1571 294 250 0 0 chr5 129313343 129313431 -23223828 + CT-rich Low_complexity Low_complexity 3 90 0 6 1571 1013 209 50 5 chr5 129314754 129314956 -23222303 + B3 SINE B2 1 211 -5 6 1571 1298 83 61 6 chr5 129315078 129315259 -23222000 - B2_Mm2 SINE B2 -4 191 1 6 1571 964 153 95 158 chr5 129318800 129319041 -23218218 + URR1A DNA MER1_type 1 226 0 6 1571 270 274 92 61 chr5 129320325 129320488 -23216771 + MLT1K LTR MaLR 259 426 -169 6 1571 342 0 0 0 chr5 129320803 129320841 -23216418 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 6 1571 711 280 60 19 chr5 129320841 129321056 -23216203 - ID_B1 SINE B4 0 224 1 6 1571 180 0 0 0 chr5 129321765 129321785 -23215474 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 6 1571 201 39 0 0 chr5 129322147 129322173 -23215086 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 6 1571 327 191 0 16 chr5 129322347 129322411 -23214848 + ID4 SINE ID 17 79 -4 6 1571 198 0 0 0 chr5 129323493 129323515 -23213744 + (TTG)n Simple_repeat Simple_repeat 3 24 0 6 1571 867 70 0 0 chr5 129323679 129323794 -23213465 + (GGGA)n Simple_repeat Simple_repeat 3 117 0 6 1571 261 0 0 0 chr5 129323812 129323841 -23213418 + (GA)n Simple_repeat Simple_repeat 2 30 0 6 1571 410 127 0 14 chr5 129324905 129324977 -23212282 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 6 1571 282 56 0 0 chr5 129325443 129325479 -23211780 + (CA)n Simple_repeat Simple_repeat 1 36 0 6 1571 321 89 0 0 chr5 129325549 129325594 -23211665 + HAL1-3A_ME LINE L1 1976 2020 -838 6 1571 190 380 18 9 chr5 129326096 129326205 -23211054 - MIR SINE MIR -40 222 113 6 1571 189 107 0 0 chr5 129326592 129326620 -23210639 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1571 378 258 232 0 chr5 129326679 129326898 -23210361 - B4A SINE B4 -22 270 1 6 1571 960 177 193 0 chr5 129327211 129327392 -23209867 - B3 SINE B2 0 216 1 6 1571 2598 58 63 0 chr5 129327502 129327884 -23209375 + RLTR10A LTR ERVK 1 406 -5 6 1571 285 337 11 0 chr5 129327889 129327984 -23209275 - PB1D10 SINE Alu -14 103 8 6 1571 228 343 65 0 chr5 129327905 129328013 -23209246 - ID_B1 SINE B4 -56 168 54 6 1571 668 282 42 16 chr5 129328004 129328195 -23209064 - ID_B1 SINE B4 -28 196 1 6 1571 1506 156 52 0 chr5 129328373 129328757 -23208502 - ZP3AR Satellite Satellite -34 404 1 6 1571 403 294 217 4 chr5 129329110 129329373 -23207886 - MER2 DNA MER2_type -12 333 15 6 1571 917 134 0 15 chr5 129329550 129329686 -23207573 - B1_Mus1 SINE Alu -10 138 5 6 1571 569 313 99 54 chr5 129329923 129330217 -23207042 - ORR1E LTR MaLR -48 311 5 6 1571 833 314 63 35 chr5 129330917 129331139 -23206120 + B4 SINE B4 1 233 -59 6 1571 1671 203 167 72 chr5 129331139 129331623 -23205636 - MT2A LTR ERVL -3 530 1 6 1571 833 314 63 35 chr5 129331623 129331684 -23205575 + B4 SINE B4 234 292 0 6 1571 449 117 26 0 chr5 129331685 129331762 -23205497 + (CATA)n Simple_repeat Simple_repeat 2 80 0 6 1571 288 0 0 0 chr5 129331765 129331797 -23205462 + (GA)n Simple_repeat Simple_repeat 2 33 0 6 1571 2329 93 9 64 chr5 129332841 129333186 -23204073 - ORR1A3 LTR MaLR 0 326 1 6 1571 850 296 4 25 chr5 129333791 129334027 -23203232 + B4A SINE B4 1 231 -61 6 1571 428 263 35 0 chr5 129334031 129334145 -23203114 + RSINE1 SINE B4 8 125 -40 6 1571 657 86 0 0 chr5 129334232 129334325 -23202934 + (GGGGA)n Simple_repeat Simple_repeat 4 96 0 6 1571 945 0 0 0 chr5 129334325 129334430 -23202829 + (GAGAA)n Simple_repeat Simple_repeat 5 109 0 6 1571 590 266 41 14 chr5 129334861 129335006 -23202253 + MTEa LTR MaLR 5 153 -226 6 1571 737 191 14 0 chr5 129335002 129335143 -23202116 + B1_Mur4 SINE Alu 7 149 -1 6 1571 672 254 84 97 chr5 129335163 129335390 -23201869 + ID_B1 SINE B4 1 224 0 6 1571 218 204 0 22 chr5 129335392 129335437 -23201822 + GA-rich Low_complexity Low_complexity 4 47 0 6 1571 589 257 22 100 chr5 129335438 129335667 -23201592 + MTEa LTR MaLR 169 379 0 6 1571 752 234 247 16 chr5 129335932 129336236 -23201023 + ORR1D1 LTR MaLR 1 374 0 6 1571 892 161 27 16 chr5 129337019 129337202 -23200057 + B2_Mm2 SINE B2 1 185 -10 6 1571 196 313 15 0 chr5 129337618 129337685 -23199574 + MIR SINE MIR 69 136 -72 6 1571 347 105 0 17 chr5 129339040 129339098 -23198161 + (TTTTC)n Simple_repeat Simple_repeat 3 59 0 6 1571 1140 55 7 0 chr5 129339112 129339258 -23198001 - B1_Mus1 SINE Alu 0 148 2 6 1571 909 276 166 3 chr5 129339810 129340159 -23197100 + MTD LTR MaLR 13 418 -1 6 1571 396 238 0 0 chr5 129340553 129340637 -23196622 - RSINE1 SINE B4 -67 98 15 6 1571 514 272 92 52 chr5 129340639 129340868 -23196391 - B4A SINE B4 -49 243 6 6 1571 859 258 14 5 chr5 129340899 129341113 -23196146 - B3 SINE B2 0 216 1 6 1571 2408 162 58 7 chr5 129341309 129341936 -23195323 + Lx5 LINE L1 5668 6367 -633 6 1571 3250 175 7 4 chr5 129341936 129342498 -23194761 + Lx5 LINE L1 6487 7050 0 6 1571 238 366 35 30 chr5 129342498 129342516 -23194743 + Lx5 LINE L1 6368 6389 -611 6 1571 558 0 0 0 chr5 129342992 129343054 -23194205 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 1571 426 322 127 25 chr5 129344019 129344255 -23193004 + MLT1K LTR MaLR 285 544 -51 6 1571 180 0 0 0 chr5 129345038 129345058 -23192201 + (GCCTG)n Simple_repeat Simple_repeat 4 23 0 6 1571 582 271 83 12 chr5 129347867 129348035 -23189224 - B3A SINE B2 -18 180 1 6 1571 293 293 52 0 chr5 129348605 129348721 -23188538 - L1MB3 LINE L1 -150 6033 5912 6 1571 218 179 206 15 chr5 129348857 129348925 -23188334 + ID4_ SINE ID 2 82 -1 6 1571 821 250 120 131 chr5 129349451 129349810 -23187449 + MTE2a LTR MaLR 15 369 -10 6 1571 268 280 93 0 chr5 129349831 129349938 -23187321 - L1MB3 LINE L1 -531 5637 5521 6 1571 335 256 200 6 chr5 129349995 129350160 -23187099 - B3A SINE B2 -1 197 1 6 1571 212 315 0 0 chr5 129350183 129350237 -23187022 - ID4 SINE ID -28 55 2 6 1571 234 261 20 71 chr5 129350476 129350575 -23186684 + PB1D10 SINE Alu 24 117 0 6 1571 225 0 0 0 chr5 129352881 129352906 -23184353 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1571 688 346 65 25 chr5 129352976 129353252 -23184007 - B4 SINE B4 -4 288 2 6 1571 325 83 0 62 chr5 129354317 129354381 -23182878 + (TCTCCC)n Simple_repeat Simple_repeat 3 62 0 6 1571 1130 260 89 62 chr5 129354996 129355611 -23181648 + RMER13A LTR ERVK 4 681 -227 6 1571 651 261 138 10 chr5 129356638 129356877 -23180382 - B4A SINE B4 -2 290 11 6 1571 1127 279 113 130 chr5 129357365 129357643 -23179616 + Lx9 LINE L1 6908 7186 -458 6 1571 390 101 0 0 chr5 129357643 129357712 -23179547 + (TCTG)n Simple_repeat Simple_repeat 2 70 0 6 1571 1127 279 113 130 chr5 129357712 129357757 -23179502 + Lx9 LINE L1 7187 7196 -448 6 1571 4283 109 11 6 chr5 129357757 129358415 -23178844 - Lx3C LINE L1 0 6976 6316 6 1571 1127 279 113 130 chr5 129358415 129358791 -23178468 + Lx9 LINE L1 7197 7596 -48 6 1571 696 167 14 21 chr5 129359349 129359490 -23177769 + RLTR46 LTR ERVK 1 140 -180 6 1571 391 290 46 41 chr5 129359534 129359728 -23177531 + RLTR46 LTR ERVK 126 320 0 6 1571 752 21 11 0 chr5 129360464 129360558 -23176701 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 6 1571 541 279 0 29 chr5 129360581 129360721 -23176538 + B1F1 SINE Alu 7 142 -7 6 1571 22 35 0 0 chr5 129360726 129360755 -23176504 + AT_rich Low_complexity Low_complexity 1 29 0 6 1571 232 255 37 47 chr5 129360762 129360869 -23176390 - L1M5 LINE L1 -462 5711 5606 6 1571 1630 26 0 0 chr5 129360873 129361064 -23176195 + B2_Mm1a SINE B2 1 191 -2 6 1571 3437 164 186 12 chr5 129361294 129362045 -23175214 + RMER19B LTR ERVK 1 882 -20 6 1571 220 209 0 0 chr5 129363057 129363111 -23174148 - MIRc SINE MIR -146 122 66 7 1571 290 296 18 57 chr5 129363134 129363283 -23173976 - MLT1A1 LTR MaLR 0 408 224 7 1571 405 0 0 0 chr5 129364044 129364089 -23173170 + (GA)n Simple_repeat Simple_repeat 2 46 0 7 1571 186 43 0 0 chr5 129364699 129364722 -23172537 + (TAA)n Simple_repeat Simple_repeat 2 24 0 7 1571 198 0 0 0 chr5 129364726 129364748 -23172511 + (TTA)n Simple_repeat Simple_repeat 2 23 0 7 1571 417 236 74 161 chr5 129365618 129365663 -23171596 + B3A SINE B2 1 34 -164 7 1571 1326 87 0 46 chr5 129365663 129365833 -23171426 + B2_Mm2 SINE B2 3 165 -30 7 1571 1041 150 0 0 chr5 129365833 129366013 -23171246 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 7 1571 1129 75 0 0 chr5 129366013 129366160 -23171099 - B1_Mus1 SINE Alu -1 147 1 7 1571 1326 87 0 46 chr5 129366160 129366182 -23171077 + B2_Mm2 SINE B2 166 186 -9 7 1571 417 236 74 161 chr5 129366182 129366353 -23170906 + B3A SINE B2 35 198 0 7 1571 872 232 132 4 chr5 129367385 129367627 -23169632 - B4 SINE B4 -17 275 3 7 1571 236 317 24 0 chr5 129367755 129367837 -23169422 - RSINE1 SINE B4 0 165 82 7 1571 329 339 25 8 chr5 129367871 129367990 -23169269 - B4 SINE B4 -170 122 2 7 1572 240 360 75 15 chr5 129368155 129368355 -23168904 + Charlie5 DNA MER1_type 2377 2588 -36 7 1572 513 246 23 23 chr5 129368577 129368710 -23168549 - B1_Mur1 SINE Alu -16 133 1 7 1572 330 26 0 0 chr5 129368803 129368842 -23168417 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1572 886 129 202 61 chr5 129369040 129369238 -23168021 + URR1A DNA MER1_type 1 226 0 7 1572 377 247 126 78 chr5 129370098 129370265 -23166994 - B3 SINE B2 0 216 42 7 1572 1140 152 8 55 chr5 129370716 129370952 -23166307 + URR1B DNA MER1_type 1 225 0 7 1572 1162 266 10 45 chr5 129371352 129371643 -23165616 + B4 SINE B4 8 288 -4 7 1572 246 273 0 0 chr5 129371646 129371701 -23165558 + (CA)n Simple_repeat Simple_repeat 2 56 0 7 1572 324 48 0 0 chr5 129371764 129371806 -23165453 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1572 627 179 96 16 chr5 129371846 129371971 -23165288 - RSINE1 SINE B4 -28 137 3 7 1572 331 299 150 17 chr5 129371991 129372170 -23165089 - MIR SINE MIR -67 195 5 7 1572 234 0 0 0 chr5 129372645 129372671 -23164588 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1572 297 254 81 8 chr5 129373282 129373405 -23163854 - LTR33 LTR ERVL -1 514 383 7 1572 476 336 61 20 chr5 129374099 129374345 -23162914 + MLT1C LTR MaLR 5 260 -207 7 1572 585 265 33 13 chr5 129374851 129375004 -23162255 + RSINE1 SINE B4 10 165 0 7 1572 269 265 29 0 chr5 129375053 129375121 -23162138 + MIR SINE MIR 101 170 -92 7 1572 432 0 0 0 chr5 129375122 129375170 -23162089 + (CA)n Simple_repeat Simple_repeat 1 48 0 7 1572 373 230 0 0 chr5 129376090 129376178 -23161081 - ID4 SINE ID -54 98 11 7 1572 201 74 0 0 chr5 129376673 129376700 -23160559 + (TATG)n Simple_repeat Simple_repeat 2 28 0 7 1572 1478 233 67 21 chr5 129377046 129377467 -23159792 + BGLII_B LTR ERVK 2 441 0 7 1572 2277 140 105 20 chr5 129377711 129378007 -23159252 + RLTR16 LTR ERVK 6 344 -161 7 1572 3282 43 0 2 chr5 129378007 129378404 -23158855 - MTA_Mm LTR MaLR 0 396 1 7 1572 2277 140 105 20 chr5 129378404 129378566 -23158693 + RLTR16 LTR ERVK 345 503 -2 7 1572 808 226 29 25 chr5 129379548 129379752 -23157507 + B3 SINE B2 1 205 -11 7 1572 27 0 0 0 chr5 129379753 129379780 -23157479 + AT_rich Low_complexity Low_complexity 1 27 0 7 1572 637 187 107 86 chr5 129379910 129380223 -23157036 + RMER10A LTR ERVL 2 382 -60 7 1572 1052 44 0 28 chr5 129380223 129380364 -23156895 - B1_Mm SINE Alu -10 137 1 7 1572 537 213 156 124 chr5 129380364 129380417 -23156842 + RMER10A LTR ERVL 383 426 -16 7 1572 930 33 0 104 chr5 129380418 129380619 -23156640 + (TTCCC)n Simple_repeat Simple_repeat 1 180 0 7 1572 312 0 98 49 chr5 129380656 129380717 -23156542 + (TTCCC)n Simple_repeat Simple_repeat 2 65 0 7 1572 218 62 0 0 chr5 129380772 129380804 -23156455 - B3A SINE B2 -166 32 1 7 1572 334 275 0 3 chr5 129381198 129381295 -23155964 - ID4_ SINE ID -49 103 8 7 1572 450 0 0 0 chr5 129381303 129381353 -23155906 + (TTA)n Simple_repeat Simple_repeat 2 51 0 7 1572 967 134 0 0 chr5 129381359 129381501 -23155758 - B1_Mur4 SINE Alu -8 142 1 7 1572 361 173 23 58 chr5 129381523 129381609 -23155650 - PB1 SINE Alu -2 125 43 7 1572 429 70 0 0 chr5 129383602 129383659 -23153600 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 1572 564 241 15 8 chr5 129383959 129384093 -23153166 + B1F SINE Alu 1 135 -14 7 1572 186 71 0 0 chr5 129384121 129384149 -23153110 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7 1572 633 184 276 6 chr5 129384161 129384331 -23152928 + B3 SINE B2 1 216 0 7 1572 203 245 39 39 chr5 129384526 129384577 -23152682 + MIRc SINE MIR 115 165 -103 7 1572 253 250 50 129 chr5 129384841 129384942 -23152317 + PB1D7 SINE Alu 23 115 -5 7 1572 219 36 0 0 chr5 129385368 129385396 -23151863 + (CCCTG)n Simple_repeat Simple_repeat 2 29 0 7 1572 4987 92 111 29 chr5 129385735 129386572 -23150687 - RMER17A2 LTR ERVK 0 906 1 7 1572 339 25 0 0 chr5 129386803 129386843 -23150416 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1572 226 245 0 0 chr5 129387234 129387287 -23149972 + (CAT)n Simple_repeat Simple_repeat 1 53 0 7 1572 212 309 10 50 chr5 129388076 129388175 -23149084 + L2c LINE L2 3058 3152 -223 7 1572 1121 76 21 0 chr5 129388436 129388581 -23148678 + B1_Mus1 SINE Alu 1 148 0 7 1572 991 297 87 4 chr5 129389304 129389568 -23147691 + B4 SINE B4 1 286 -6 7 1572 216 0 0 0 chr5 129389569 129389593 -23147666 + (GA)n Simple_repeat Simple_repeat 2 25 0 7 1572 1035 84 0 0 chr5 129390551 129390694 -23146565 + (GAA)n Simple_repeat Simple_repeat 1 143 0 7 1572 261 0 0 0 chr5 129390694 129390723 -23146536 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 7 1572 213 286 171 0 chr5 129391060 129391130 -23146129 + ID4 SINE ID 2 83 0 7 1572 217 238 0 35 chr5 129391167 129391254 -23146005 + GA-rich Low_complexity Low_complexity 4 87 0 7 1572 1288 169 9 14 chr5 129392643 129392865 -23144394 + URR1B DNA MER1_type 5 225 0 7 1572 592 211 0 0 chr5 129392941 129393050 -23144209 - URR1A DNA MER1_type -117 109 1 7 1572 831 263 11 0 chr5 129394452 129394631 -23142628 + B3A SINE B2 2 182 -16 7 1572 234 0 0 0 chr5 129396397 129396423 -23140836 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 7 1572 1227 193 0 9 chr5 129396423 129396635 -23140624 + MTC LTR MaLR 210 420 -1 7 1572 606 281 8 0 chr5 129396910 129397038 -23140221 + RSINE1 SINE B4 2 130 -35 7 1572 279 0 0 0 chr5 129397054 129397085 -23140174 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1572 258 32 0 0 chr5 129397092 129397123 -23140136 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 7 1572 798 226 18 30 chr5 129397765 129397849 -23139410 + ID SINE ID 1 82 -142 7 1572 289 305 42 0 chr5 129397849 129397944 -23139315 + B1_Mur3 SINE Alu 1 99 -50 7 1572 574 145 0 25 chr5 129397948 129398068 -23139191 + Lx2B LINE L1 6864 6980 -20 7 1572 249 33 0 0 chr5 129398070 129398100 -23139159 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 7 1572 1187 56 11 27 chr5 129398100 129398283 -23138976 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 7 1572 477 85 102 41 chr5 129398283 129398430 -23138829 + GA-rich Low_complexity Low_complexity 4 159 0 7 1572 1335 161 5 9 chr5 129398677 129398897 -23138362 + MTC LTR MaLR 200 418 -3 7 1572 1158 59 0 0 chr5 129398897 129399032 -23138227 + B1_Mus1 SINE Alu 1 135 -13 7 1572 654 79 0 0 chr5 129399034 129399123 -23138136 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 7 1572 234 250 84 36 chr5 129399766 129399849 -23137410 - ID_B1 SINE B4 -30 194 108 7 1572 233 284 128 64 chr5 129400144 129400253 -23137006 + Tigger7 DNA MER2_type 2354 2469 -22 7 1572 232 255 10 10 chr5 129400430 129400533 -23136726 + CT-rich Low_complexity Low_complexity 1 103 0 7 1572 21 0 0 0 chr5 129401236 129401257 -23136002 + AT_rich Low_complexity Low_complexity 1 21 0 7 1572 1914 138 42 18 chr5 129401525 129401787 -23135472 + RLTR11A LTR ERVK 189 457 -71 7 1572 189 0 0 0 chr5 129401787 129401808 -23135451 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1572 1914 138 42 18 chr5 129401808 129401877 -23135382 + RLTR11A LTR ERVK 458 527 -1 7 1572 677 228 41 29 chr5 129402297 129402469 -23134790 + HAL1-2a_MD LINE L1 2342 2515 -509 7 1572 404 333 0 14 chr5 129402469 129402615 -23134644 + (CACCAT)n Simple_repeat Simple_repeat 2 145 0 7 1572 785 233 61 15 chr5 129403835 129404031 -23133228 - ID_B1 SINE B4 -17 207 3 7 1572 291 252 68 39 chr5 129404109 129404212 -23133047 - MTD LTR MaLR -4 415 310 7 1572 2117 172 19 14 chr5 129404201 129404566 -23132693 + ORR1D1 LTR MaLR 8 374 0 7 1572 1003 258 101 17 chr5 129404571 129404859 -23132400 - MTD LTR MaLR -104 315 4 7 1572 408 277 0 40 chr5 129405105 129405229 -23132030 + RMER5 LTR ERV1 42 160 -374 7 1572 815 281 69 22 chr5 129405260 129405537 -23131722 + RMER5 LTR ERV1 233 522 -12 7 1572 181 346 115 66 chr5 129405805 129406031 -23131228 - L2b LINE L2 0 3375 3139 7 1572 472 171 0 0 chr5 129406450 129406526 -23130733 + RSINE1 SINE B4 57 132 -33 7 1572 410 0 20 0 chr5 129406544 129406594 -23130665 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1572 963 94 0 0 chr5 129406878 129407005 -23130254 - B1_Mus1 SINE Alu -12 136 10 7 1572 422 216 18 89 chr5 129406912 129407024 -23130235 - MT2B LTR ERVL -345 256 153 7 1572 478 177 0 0 chr5 129407386 129407465 -23129794 + B3 SINE B2 2 80 -136 7 1572 238 269 35 82 chr5 129407508 129407593 -23129666 + B1_Mus2 SINE Alu 5 85 -62 7 1572 198 103 0 0 chr5 129407630 129407659 -23129600 + (ATG)n Simple_repeat Simple_repeat 2 30 0 7 1572 406 331 121 59 chr5 129407677 129407950 -23129309 + B4A SINE B4 3 292 0 7 1572 211 75 49 24 chr5 129407960 129408001 -23129258 + (CA)n Simple_repeat Simple_repeat 1 42 0 8 1572 243 167 70 9 chr5 129408040 129408155 -23129104 + (CA)n Simple_repeat Simple_repeat 1 122 0 8 1572 857 62 47 0 chr5 129408227 129408356 -23128903 + L1Md_F2 LINE L1 6448 6582 0 8 1572 590 281 89 46 chr5 129408591 129408871 -23128388 - B4A SINE B4 0 292 1 8 1572 524 169 21 10 chr5 129410611 129410707 -23126552 - B1_Mus2 SINE Alu 0 147 51 8 1572 237 220 50 17 chr5 129410668 129410728 -23126531 - 4.5SRNA scRNA scRNA -8 86 25 8 1572 509 239 17 112 chr5 129411117 129411296 -23125963 + RSINE1 SINE B4 3 164 -1 8 1572 2247 70 33 62 chr5 129411297 129411633 -23125626 - ORR1A2 LTR MaLR -1 326 1 8 1572 327 317 33 46 chr5 129412232 129412384 -23124875 - MIR SINE MIR 0 262 113 8 1572 270 0 0 0 chr5 129412528 129412558 -23124701 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1572 252 0 0 0 chr5 129412558 129412585 -23124674 + (GA)n Simple_repeat Simple_repeat 1 28 0 8 1572 464 292 18 12 chr5 129412679 129412842 -23124417 + (TG)n Simple_repeat Simple_repeat 1 164 0 8 1572 738 303 63 45 chr5 129412844 129413131 -23124128 - B4A SINE B4 0 292 1 8 1572 833 194 0 6 chr5 129414039 129414220 -23123039 + GA-rich Low_complexity Low_complexity 1 180 0 8 1572 432 0 0 0 chr5 129414482 129414530 -23122729 + (CTG)n Simple_repeat Simple_repeat 2 49 0 8 1572 378 0 0 0 chr5 129414530 129414572 -23122687 + (TCC)n Simple_repeat Simple_repeat 3 44 0 8 1572 1236 42 0 0 chr5 129414574 129414718 -23122541 - B1_Mm SINE Alu 0 147 4 8 1572 408 297 0 0 chr5 129414782 129415097 -23122162 + (TG)n Simple_repeat Simple_repeat 1 315 0 8 1572 676 242 155 5 chr5 129416133 129416163 -23121096 - B3 SINE B2 0 216 187 8 1572 312 27 0 0 chr5 129416163 129416200 -23121059 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1572 676 242 155 5 chr5 129416200 129416356 -23120903 - B3 SINE B2 -30 186 3 8 1572 309 290 10 41 chr5 129416525 129416622 -23120637 + B4A SINE B4 131 224 -68 8 1572 260 260 0 0 chr5 129416792 129416842 -23120417 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1572 272 304 60 17 chr5 129417027 129417080 -23120179 - MT2B2 LTR ERVL -310 274 178 8 1572 351 173 0 0 chr5 129417080 129417132 -23120127 - PB1D9 SINE Alu -68 52 1 8 1572 272 304 60 17 chr5 129417132 129417144 -23120115 - MT2B2 LTR ERVL -310 177 153 8 1572 270 227 40 0 chr5 129417153 129417228 -23120031 - L1MA4 LINE L1 -375 5925 5848 8 1572 790 153 201 32 chr5 129418634 129418823 -23118436 - URR1B DNA MER1_type -3 222 2 8 1572 297 89 0 0 chr5 129418883 129418928 -23118331 + (CAGA)n Simple_repeat Simple_repeat 3 47 0 8 1572 1265 110 21 0 chr5 129419117 129419308 -23117951 + B2_Mm2 SINE B2 1 195 0 8 1572 319 157 0 0 chr5 129419310 129419361 -23117898 + MTEa LTR MaLR 25 75 -304 8 1572 627 260 56 17 chr5 129419762 129419942 -23117317 + B3A SINE B2 2 188 -10 8 1572 573 239 0 0 chr5 129420234 129420414 -23116845 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1572 191 229 0 28 chr5 129420404 129420476 -23116783 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 8 1572 458 238 3 0 chr5 129420480 129420805 -23116454 + (CA)n Simple_repeat Simple_repeat 1 326 0 8 1572 423 345 52 99 chr5 129421030 129421413 -23115846 - MLT1B LTR MaLR -12 378 14 8 1572 613 268 31 31 chr5 129421579 129421741 -23115518 + RSINE1 SINE B4 2 163 -2 8 1572 659 240 52 58 chr5 129421764 129421972 -23115287 - MTE2a LTR MaLR 0 379 154 8 1572 230 205 24 24 chr5 129421974 129422059 -23115200 + GA-rich Low_complexity Low_complexity 2 86 0 8 1572 221 182 18 0 chr5 129422114 129422169 -23115090 + GA-rich Low_complexity Low_complexity 2 57 0 8 1572 823 240 14 43 chr5 129422172 129422454 -23114805 - ORR1E LTR MaLR -108 262 1 8 1572 286 203 188 0 chr5 129422639 129422703 -23114556 + MTE2a LTR MaLR 8 83 -296 8 1572 563 214 27 20 chr5 129422794 129422931 -23114328 + MTE2a LTR MaLR 254 403 -16 8 1572 291 157 0 0 chr5 129424002 129424053 -23113206 + CT-rich Low_complexity Low_complexity 1 51 0 8 1572 330 83 0 0 chr5 129424054 129424090 -23113169 + (TA)n Simple_repeat Simple_repeat 2 37 0 8 1572 387 0 0 0 chr5 129424090 129424133 -23113126 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1572 330 83 0 0 chr5 129424133 129424144 -23113115 + (TA)n Simple_repeat Simple_repeat 1 11 0 8 1572 344 343 10 0 chr5 129424163 129424265 -23112994 - PB1D10 SINE Alu -13 104 2 8 1572 254 344 120 5 chr5 129424345 129424529 -23112730 + MER33 DNA MER1_type 35 239 -85 8 1572 325 230 89 75 chr5 129424589 129424735 -23112524 + MER5B DNA MER1_type 26 173 -5 8 1572 315 0 0 0 chr5 129425193 129425228 -23112031 + (GA)n Simple_repeat Simple_repeat 1 35 0 8 1572 228 111 0 0 chr5 129425229 129425265 -23111994 + (CATA)n Simple_repeat Simple_repeat 3 38 0 8 1572 828 281 17 55 chr5 129425297 129425534 -23111725 + B4A SINE B4 2 229 -63 8 1572 1119 195 89 0 chr5 129425537 129425727 -23111532 + B3 SINE B2 1 207 -9 8 1572 309 199 42 100 chr5 129426280 129426369 -23110890 + RMER17D LTR ERVK 288 383 -506 8 1572 207 0 0 0 chr5 129426369 129426392 -23110867 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1572 309 199 42 100 chr5 129426392 129426542 -23110717 + RMER17D LTR ERVK 384 513 -376 8 1572 369 0 0 0 chr5 129426605 129426646 -23110613 + (GA)n Simple_repeat Simple_repeat 2 42 0 8 1572 227 276 112 0 chr5 129426648 129426746 -23110513 + L1MC4a LINE L1 5388 5496 -2386 8 1572 444 231 232 24 chr5 129426937 129427067 -23110192 + B3A SINE B2 1 167 -31 8 1572 423 0 0 0 chr5 129427067 129427114 -23110145 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1572 444 231 232 24 chr5 129427114 129427147 -23110112 + B3A SINE B2 168 198 0 8 1572 473 125 56 0 chr5 129427375 129427447 -23109812 - B1_Mur2 SINE Alu -9 140 65 8 1572 663 192 8 23 chr5 129427451 129427579 -23109680 + MTEa LTR MaLR 19 144 -235 8 1572 561 141 0 0 chr5 129427718 129427796 -23109463 - B2_Mm2 SINE B2 -116 79 2 8 1572 736 283 21 11 chr5 129427811 129428000 -23109259 + MTEa LTR MaLR 181 371 -8 8 1572 690 245 60 20 chr5 129428311 129428461 -23108798 + RSINE1 SINE B4 4 159 -6 8 1572 1012 155 10 36 chr5 129428492 129428686 -23108573 + B2_Mm2 SINE B2 7 195 0 8 1572 243 0 0 0 chr5 129428688 129428715 -23108544 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1572 324 302 32 40 chr5 129428715 129428839 -23108420 + L1MC4a LINE L1 5966 6088 -1794 8 1572 1109 123 0 6 chr5 129429175 129429355 -23107904 + (GGAGAA)n Simple_repeat Simple_repeat 1 179 0 8 1572 1287 46 11 6 chr5 129429472 129429648 -23107611 + (GGAGA)n Simple_repeat Simple_repeat 2 178 0 8 1572 1138 88 7 0 chr5 129430013 129430160 -23107099 + B1_Mus1 SINE Alu 1 148 0 8 1572 21 0 0 0 chr5 129430273 129430294 -23106965 + AT_rich Low_complexity Low_complexity 1 21 0 8 1572 548 200 19 45 chr5 129431412 129431550 -23105709 + B1_Mur1 SINE Alu 9 148 0 8 1572 824 272 14 18 chr5 129431563 129431780 -23105479 + B3 SINE B2 1 216 0 8 1572 659 185 52 30 chr5 129431801 129431935 -23105324 + RSINE1 SINE B4 3 139 -26 8 1572 249 310 66 123 chr5 129431935 129432029 -23105230 + B3 SINE B2 2 216 0 8 1572 1385 179 108 66 chr5 129432677 129433011 -23104248 + MTD LTR MaLR 64 411 -8 8 1572 675 213 21 21 chr5 129433239 129433383 -23103876 + B1F1 SINE Alu 6 149 0 8 1572 260 313 0 0 chr5 129433398 129433465 -23103794 + tRNA-Ala-GCY_ tRNA tRNA 1 67 -8 8 1572 1940 141 25 3 chr5 129433514 129433828 -23103431 + ORR1A4 LTR MaLR 1 321 -8 8 1572 460 192 165 8 chr5 129434349 129434470 -23102789 + B1F1 SINE Alu 10 149 0 8 1572 462 226 6 33 chr5 129434548 129434731 -23102528 + GA-rich Low_complexity Low_complexity 2 179 0 8 1572 469 233 0 30 chr5 129435327 129435495 -23101764 + (TA)n Simple_repeat Simple_repeat 1 163 0 8 1572 648 283 98 44 chr5 129435513 129435809 -23101450 + Lx8 LINE L1 7161 7472 -1 8 1572 594 234 38 7 chr5 129436653 129436793 -23100466 - B1F SINE Alu -4 145 1 8 1572 480 262 0 0 chr5 129436796 129436903 -23100356 - B1F SINE Alu -1 148 42 8 1572 1841 161 39 71 chr5 129437460 129437842 -23099417 + ORR1D1 LTR MaLR 5 374 0 8 1572 1109 293 56 24 chr5 129437854 129438319 -23098940 + Lx8 LINE L1 6843 7322 -151 8 1572 259 70 13 66 chr5 129438320 129438396 -23098863 + (CAAAA)n Simple_repeat Simple_repeat 2 73 0 8 1572 622 241 55 49 chr5 129439589 129439772 -23097487 + B3A SINE B2 2 185 -13 8 1572 1227 97 37 26 chr5 129439910 129440100 -23097159 + B2_Mm2 SINE B2 2 193 -2 8 1572 414 0 0 0 chr5 129441711 129441757 -23095502 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1572 306 0 0 0 chr5 129441757 129441790 -23095469 + (GA)n Simple_repeat Simple_repeat 1 34 0 8 1572 665 274 114 0 chr5 129441796 129441971 -23095288 - B4 SINE B4 -96 196 2 8 1572 216 201 31 55 chr5 129442150 129442313 -23094946 + G-rich Low_complexity Low_complexity 1 159 0 8 1572 192 27 0 75 chr5 129442391 129442431 -23094828 + (TGGGGG)n Simple_repeat Simple_repeat 6 42 0 8 1572 1057 235 81 40 chr5 129442513 129442829 -23094430 - MTD LTR MaLR -72 307 1 8 1572 368 192 12 82 chr5 129442878 129442963 -23094296 + MT2B LTR ERVL 162 240 -361 8 1572 586 185 46 0 chr5 129442887 129442995 -23094264 + PB1D9 SINE Alu 8 120 0 8 1572 206 186 16 33 chr5 129443468 129443529 -23093730 + C-rich Low_complexity Low_complexity 4 63 0 8 1572 1071 112 12 12 chr5 129443991 129444162 -23093097 + B2_Mm1t SINE B2 9 179 -14 8 1572 322 130 0 0 chr5 129444195 129444249 -23093010 + B2_Mm2 SINE B2 48 101 -94 8 1572 492 18 0 0 chr5 129444263 129444320 -23092939 + (GGA)n Simple_repeat Simple_repeat 3 59 0 8 1572 282 264 0 33 chr5 129444582 129444598 -23092661 + polypurine Low_complexity Low_complexity 2 16 0 8 1572 1021 122 0 0 chr5 129444598 129444746 -23092513 + B1_Mus1 SINE Alu 1 148 0 8 1572 282 264 0 33 chr5 129444746 129444819 -23092440 + GA-rich Low_complexity Low_complexity 17 88 0 8 1572 180 0 0 0 chr5 129446615 129446635 -23090624 + (TGGGGG)n Simple_repeat Simple_repeat 3 22 0 8 1572 306 0 0 0 chr5 129447015 129447049 -23090210 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1572 473 235 0 0 chr5 129447057 129447159 -23090100 - RSINE1 SINE B4 -34 131 30 9 1572 488 271 17 0 chr5 129447228 129447286 -23089973 + ID SINE ID 23 82 -142 9 1572 259 293 152 0 chr5 129447286 129447385 -23089874 + PB1D10 SINE Alu 1 114 -3 9 1572 894 166 93 36 chr5 129447387 129447538 -23089721 + B3 SINE B2 1 165 -51 9 1572 618 51 0 0 chr5 129447538 129447616 -23089643 + (CA)n Simple_repeat Simple_repeat 1 78 0 9 1572 894 166 93 36 chr5 129447616 129447658 -23089601 + B3 SINE B2 166 205 -11 9 1572 264 143 0 0 chr5 129449071 129449127 -23088132 + (CAAA)n Simple_repeat Simple_repeat 4 59 0 9 1572 1789 146 29 100 chr5 129449525 129449812 -23087447 + ORR1B1 LTR MaLR 41 299 -95 9 1572 3427 18 0 0 chr5 129449812 129450208 -23087051 + MTA_Mm LTR MaLR 1 396 0 9 1572 8958 19 19 1 chr5 129450208 129451287 -23085972 + MTA_Mm-int LTR MaLR 1 1098 0 9 1572 3427 18 0 0 chr5 129451287 129451683 -23085576 + MTA_Mm LTR MaLR 1 396 0 9 1572 1789 146 29 100 chr5 129451683 129451774 -23085485 + ORR1B1 LTR MaLR 300 392 -2 9 1572 1484 127 51 12 chr5 129452015 129452271 -23084988 + ORR1B2 LTR MaLR 1 266 -101 9 1572 225 108 0 0 chr5 129453185 129453222 -23084037 + (CCCTG)n Simple_repeat Simple_repeat 3 39 0 9 1572 1584 58 7 0 chr5 129453788 129454135 -23083124 + ZP3AR Satellite Satellite 1 349 0 9 1572 275 250 15 0 chr5 129454135 129454203 -23083056 + ID4 SINE ID 1 69 -14 9 1572 432 0 0 0 chr5 129454204 129454252 -23083007 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 1572 291 114 0 0 chr5 129454252 129454295 -23082964 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1572 289 348 0 0 chr5 129454534 129454623 -23082636 + ID_B1 SINE B4 81 169 -55 9 1572 577 253 80 7 chr5 129454652 129454803 -23082456 + RSINE1 SINE B4 4 165 0 9 1572 333 0 0 0 chr5 129454804 129454841 -23082418 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 9 1572 2339 110 6 3 chr5 129455834 129456179 -23081080 - ORR1A1 LTR MaLR 0 346 1 9 1572 239 133 22 0 chr5 129456278 129456323 -23080936 + GA-rich Low_complexity Low_complexity 2 47 0 9 1572 210 256 73 0 chr5 129456821 129456903 -23080356 + MER5A DNA MER1_type 6 93 -96 9 1572 216 122 0 0 chr5 129457244 129457285 -23079974 + (G)n Simple_repeat Simple_repeat 1 41 0 9 1572 332 186 0 47 chr5 129457800 129457907 -23079352 + CT-rich Low_complexity Low_complexity 3 104 0 9 1572 558 0 0 0 chr5 129458127 129458189 -23079070 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 1572 478 79 13 13 chr5 129458941 129459018 -23078241 + (GA)n Simple_repeat Simple_repeat 2 78 0 9 1572 495 48 0 0 chr5 129459093 129459155 -23078104 + (GA)n Simple_repeat Simple_repeat 2 63 0 9 1572 420 147 0 0 chr5 129459216 129459291 -23077968 + (CA)n Simple_repeat Simple_repeat 2 76 0 9 1572 1231 106 6 0 chr5 129459978 129460158 -23077101 + B2_Mm2 SINE B2 1 181 -14 9 1572 30 27 0 0 chr5 129460270 129460307 -23076952 + AT_rich Low_complexity Low_complexity 1 37 0 9 1572 948 170 71 0 chr5 129460315 129460497 -23076762 + B3 SINE B2 18 212 -4 9 1572 1193 47 0 0 chr5 129460511 129460659 -23076600 + B1_Mus1 SINE Alu 1 148 0 9 1572 236 307 114 0 chr5 129460837 129460925 -23076334 + B3A SINE B2 65 162 -36 9 1572 867 91 161 43 chr5 129460949 129461110 -23076149 - B2_Mm2 SINE B2 -14 181 2 9 1572 246 0 65 43 chr5 129461126 129461172 -23076087 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 9 1572 1129 41 7 7 chr5 129461174 129461321 -23075938 - B1_Mus1 SINE Alu 0 148 2 9 1572 334 293 209 21 chr5 129461559 129461793 -23075466 + L1MB5 LINE L1 5699 5976 -198 9 1572 455 206 34 49 chr5 129462148 129462314 -23074945 + PB1D7 SINE Alu 15 310 -1 9 1572 1080 146 48 14 chr5 129462318 129462526 -23074733 + B3 SINE B2 2 216 0 9 1572 233 57 0 28 chr5 129462835 129462861 -23074398 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 9 1572 1006 68 0 48 chr5 129462861 129463047 -23074212 + (GGAA)n Simple_repeat Simple_repeat 2 178 0 9 1572 233 57 0 28 chr5 129463047 129463056 -23074203 + (GAAA)n Simple_repeat Simple_repeat 1 9 0 9 1572 817 126 23 11 chr5 129463055 129463231 -23074028 + GA-rich Low_complexity Low_complexity 1 178 0 9 1572 203 161 0 0 chr5 129463231 129463262 -23073997 + polypurine Low_complexity Low_complexity 3 33 0 9 1572 929 54 0 8 chr5 129464044 129464174 -23073085 + B2_Mm2 SINE B2 1 129 -66 9 1572 1221 132 36 12 chr5 129464198 129464429 -23072830 + ORR1B1 LTR MaLR 94 386 -8 9 1572 316 177 0 0 chr5 129464451 129464513 -23072746 + G-rich Low_complexity Low_complexity 5 66 0 9 1572 574 53 16 124 chr5 129464517 129464711 -23072548 + (GGATG)n Simple_repeat Simple_repeat 4 176 0 9 1572 1505 214 42 21 chr5 129465038 129465417 -23071842 + MTD LTR MaLR 6 389 -30 9 1572 987 172 119 10 chr5 129465444 129465638 -23071621 - B3 SINE B2 0 216 2 9 1572 294 29 0 0 chr5 129465701 129465736 -23071523 + (TA)n Simple_repeat Simple_repeat 2 36 0 9 1572 1438 185 87 17 chr5 129465766 129466112 -23071147 - ORR1D2 LTR MaLR 0 370 1 9 1572 461 275 44 37 chr5 129466289 129466425 -23070834 + B4A SINE B4 1 137 -155 9 1572 268 175 143 0 chr5 129466505 129466568 -23070691 + ORR1D2 LTR MaLR 1 72 -298 9 1572 275 333 0 11 chr5 129466667 129466761 -23070498 + B4A SINE B4 200 292 0 9 1572 285 256 51 0 chr5 129466900 129466978 -23070281 + ID4_ SINE ID 2 83 0 9 1572 295 280 203 0 chr5 129467039 129467157 -23070102 + B1_Mur2 SINE Alu 7 148 -1 9 1572 1050 195 28 9 chr5 129467440 129467652 -23069607 + B3 SINE B2 1 216 0 9 1572 21 0 0 0 chr5 129467662 129467683 -23069576 + AT_rich Low_complexity Low_complexity 1 21 0 9 1572 576 250 8 0 chr5 129467859 129467983 -23069276 + B3A SINE B2 1 125 -73 9 1572 360 0 0 0 chr5 129468020 129468060 -23069199 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1572 542 217 0 9 chr5 129468070 129468177 -23069082 + B3A SINE B2 2 107 -91 9 1572 1028 109 0 0 chr5 129468177 129468324 -23068935 + B1_Mus1 SINE Alu 2 148 0 9 1572 889 164 0 17 chr5 129468324 129468504 -23068755 + GA-rich Low_complexity Low_complexity 4 180 0 9 1572 2603 25 41 0 chr5 129468715 129469029 -23068230 - IAPLTR2b LTR ERVK 0 327 1 9 1572 624 169 97 30 chr5 129469199 129469333 -23067926 + URR1B DNA MER1_type 83 225 0 9 1572 183 129 0 0 chr5 129469904 129469935 -23067324 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1572 377 277 15 15 chr5 129470510 129470640 -23066619 + PB1D10 SINE Alu 15 150 0 9 1572 24 0 0 0 chr5 129470680 129470704 -23066555 + GC_rich Low_complexity Low_complexity 1 24 0 9 1572 1168 29 0 0 chr5 129470711 129470850 -23066409 - B1_Mus1 SINE Alu -8 140 2 9 1572 182 178 66 11 chr5 129471784 129471875 -23065384 + (TAGA)n Simple_repeat Simple_repeat 4 99 0 9 1572 512 167 21 0 chr5 129471951 129472043 -23065216 - B1_Mus2 SINE Alu 0 147 54 9 1572 5595 164 40 49 chr5 129472043 129472429 -23064830 + RMER12 LTR ERVK 1 387 -935 9 1572 1319 62 50 0 chr5 129472429 129472608 -23064651 + B2_Mm1t SINE B2 2 189 -4 9 1572 5595 164 40 49 chr5 129472608 129473422 -23063837 + RMER12 LTR ERVK 388 1190 -132 9 1572 331 146 0 0 chr5 129473502 129473557 -23063702 - B1_Mur4 SINE Alu -87 63 9 9 1572 1132 130 0 11 chr5 129473620 129473799 -23063460 + B2_Mm2 SINE B2 1 177 -18 9 1572 181 0 69 0 chr5 129474557 129474586 -23062673 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1572 212 0 0 35 chr5 129474591 129474620 -23062639 + (TTG)n Simple_repeat Simple_repeat 2 29 0 9 1572 972 98 0 0 chr5 129474622 129474755 -23062504 - B1_Mus1 SINE Alu -14 134 2 9 1572 617 214 185 11 chr5 129475106 129475238 -23062021 + B3 SINE B2 1 151 -65 9 1572 411 21 0 0 chr5 129475238 129475286 -23061973 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1572 617 214 185 11 chr5 129475286 129475337 -23061922 + B3 SINE B2 152 215 -1 9 1572 1037 211 10 0 chr5 129475338 129475537 -23061722 + B3 SINE B2 11 211 -5 9 1572 824 207 0 0 chr5 129475550 129475695 -23061564 + B1_Mus1 SINE Alu 4 148 0 9 1572 30 27 0 0 chr5 129475695 129475732 -23061527 + AT_rich Low_complexity Low_complexity 1 37 0 9 1572 1161 36 0 0 chr5 129475732 129475870 -23061389 + B1_Mm SINE Alu 1 138 -9 9 1572 261 0 0 0 chr5 129475870 129475899 -23061360 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1572 1887 90 48 114 chr5 129476112 129476192 -23061067 - ORR1A4 LTR MaLR 0 329 288 9 1572 1186 41 0 7 chr5 129476192 129476340 -23060919 - B1_Mus2 SINE Alu 0 147 1 9 1572 1887 90 48 114 chr5 129476340 129476611 -23060648 - ORR1A4 LTR MaLR -42 287 1 9 1572 186 43 0 0 chr5 129477510 129477533 -23059726 + (TGG)n Simple_repeat Simple_repeat 1 23 0 9 1572 477 90 0 0 chr5 129477533 129477600 -23059659 + (TG)n Simple_repeat Simple_repeat 1 67 0 9 1572 621 216 7 7 chr5 129477647 129477782 -23059477 + B1_Mur1 SINE Alu 2 136 -13 9 1572 246 0 114 0 chr5 129478087 129478131 -23059128 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 9 1572 898 205 58 0 chr5 129478446 129478636 -23058623 + ID_B1 SINE B4 21 221 -3 9 1572 231 61 0 0 chr5 129478637 129478670 -23058589 + (CAAG)n Simple_repeat Simple_repeat 4 36 0 9 1572 189 0 0 0 chr5 129478681 129478702 -23058557 + (GGGA)n Simple_repeat Simple_repeat 4 24 0 9 1572 661 139 0 77 chr5 129478706 129478901 -23058358 + GA-rich Low_complexity Low_complexity 1 180 0 9 1572 192 40 0 0 chr5 129478935 129478960 -23058299 + (CAAG)n Simple_repeat Simple_repeat 4 28 0 9 1572 740 91 0 9 chr5 129478969 129479080 -23058179 + (GGAA)n Simple_repeat Simple_repeat 2 111 0 9 1572 1096 81 0 0 chr5 129479100 129479248 -23058011 - B1_Mus1 SINE Alu 0 148 1 9 1572 258 156 0 0 chr5 129479716 129479761 -23057498 + GA-rich Low_complexity Low_complexity 1 45 0 9 1572 234 291 61 22 chr5 129479895 129480010 -23057249 + L1MA4 LINE L1 5840 5957 -346 9 1572 550 181 24 65 chr5 129480326 129480450 -23056809 + PB1D7 SINE Alu 2 120 0 9 1572 605 241 70 6 chr5 129480785 129480956 -23056303 + B3A SINE B2 1 182 -16 1 1572 341 135 62 0 chr5 129481116 129481212 -23056047 - IAPEz-int LTR ERVK -5546 935 834 1 1572 285 75 57 0 chr5 129481186 129481239 -23056020 - IAPEz-int LTR ERVK -5546 935 880 1 1572 348 88 0 0 chr5 129481346 129481403 -23055856 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 1 1572 359 218 83 33 chr5 129481514 129481637 -23055622 + PB1D10 SINE Alu 1 117 0 1 1572 377 211 261 45 chr5 129481671 129481805 -23055454 + RSINE1 SINE B4 3 165 0 1 1572 967 225 208 23 chr5 129482590 129482932 -23054327 + MTD LTR MaLR 1 405 -14 1 1572 300 288 192 24 chr5 129483011 129483178 -23054081 + L1MA4 LINE L1 5595 5789 -502 1 1572 209 83 0 27 chr5 129483221 129483258 -23054001 + (TA)n Simple_repeat Simple_repeat 2 37 0 1 1572 306 73 0 0 chr5 129483351 129483392 -23053867 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 1 1572 624 153 0 0 chr5 129483393 129483530 -23053729 + CT-rich Low_complexity Low_complexity 1 137 0 1 1572 975 114 7 20 chr5 129483615 129483767 -23053492 - B1_Mur4 SINE Alu 0 150 1 1 1572 1001 38 51 0 chr5 129483837 129483995 -23053264 + (CATA)n Simple_repeat Simple_repeat 1 166 0 1 1572 1149 101 6 0 chr5 129484027 129484196 -23053063 + B2_Mm1t SINE B2 2 171 -22 1 1572 329 72 348 18 chr5 129484247 129484359 -23052900 + B2_Mm2 SINE B2 47 195 0 1 1572 278 304 11 0 chr5 129484359 129484451 -23052808 + L1MA4 LINE L1 5815 5907 -393 1 1572 993 195 46 0 chr5 129484458 129484653 -23052606 + B3 SINE B2 1 204 -12 1 1572 571 226 135 0 chr5 129484923 129485056 -23052203 + B3A SINE B2 1 151 -47 1 1572 321 26 0 0 chr5 129485064 129485102 -23052157 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1572 333 0 0 0 chr5 129485102 129485138 -23052121 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1572 686 212 182 0 chr5 129485370 129485540 -23051719 + B3 SINE B2 16 216 0 1 1572 1032 183 54 36 chr5 129485951 129486172 -23051087 - URR1B DNA MER1_type 0 225 1 1 1572 1065 176 55 10 chr5 129486264 129486465 -23050794 - B3 SINE B2 0 216 7 1 1572 1763 163 105 3 chr5 129486722 129487087 -23050172 - MTD LTR MaLR -14 405 13 1 1572 251 85 0 21 chr5 129487088 129487136 -23050123 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1572 244 270 123 19 chr5 129487218 129487373 -23049886 + MTEa LTR MaLR 197 367 -12 1 1572 273 302 54 24 chr5 129487700 129487866 -23049393 - L2a LINE L2 -190 3236 3066 1 1572 781 206 61 15 chr5 129488029 129488226 -23049033 + B3 SINE B2 5 210 -6 1 1572 315 0 0 0 chr5 129489519 129489554 -23047705 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1572 228 314 23 11 chr5 129489945 129490032 -23047227 - RMER15 LTR ERVL -36 539 452 1 1572 298 224 79 0 chr5 129490294 129490370 -23046889 + RMER15 LTR ERVL 492 573 -2 1 1572 221 219 0 0 chr5 129492499 129492540 -23044719 + (CGTG)n Simple_repeat Simple_repeat 2 42 0 1 1572 32 57 0 0 chr5 129494545 129494598 -23042661 + AT_rich Low_complexity Low_complexity 1 53 0 1 1572 1387 43 0 11 chr5 129496039 129496227 -23041032 - L1Md_F2 LINE L1 -1 6581 6396 1 1572 1825 155 64 3 chr5 129497221 129497564 -23039695 + ORR1B2 LTR MaLR 1 364 -3 1 1572 261 288 21 120 chr5 129498274 129498416 -23038843 + MT2B LTR ERVL 138 265 -336 1 1572 676 213 21 29 chr5 129498319 129498459 -23038800 + B1_Mur1 SINE Alu 11 149 0 1 1572 982 121 40 17 chr5 129498668 129498844 -23038415 + URR1A DNA MER1_type 43 222 -4 1 1572 1408 58 0 11 chr5 129498846 129499037 -23038222 + B2_Mm2 SINE B2 4 192 -3 1 1573 1201 68 0 13 chr5 129500133 129500283 -23036976 + B1_Mus1 SINE Alu 1 148 0 1 1573 180 0 0 0 chr5 129501537 129501557 -23035702 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1573 693 86 0 171 chr5 129501952 129502092 -23035167 + B1_Mus1 SINE Alu 1 116 -32 3 1573 252 0 0 0 chr5 129502108 129502136 -23035123 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1573 509 225 147 90 chr5 129502469 129502625 -23034634 + RSINE1 SINE B4 1 165 0 5 1573 234 290 109 27 chr5 129503005 129503115 -23034144 + MLT1E2 LTR MaLR 45 163 -464 6 1573 2046 106 98 9 chr5 129503290 129503615 -23033644 + ORR1B2 LTR MaLR 1 354 -13 7 1573 1007 211 39 19 chr5 129503788 129503996 -23033263 + B3 SINE B2 2 213 -3 8 1573 313 274 0 50 chr5 129505028 129505128 -23032131 + PB1D10 SINE Alu 23 117 0 9 1573 405 0 0 0 chr5 129505738 129505783 -23031476 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1573 246 250 14 14 chr5 129505791 129505860 -23031399 - ID4_ SINE ID -13 70 2 1 1573 704 176 111 61 chr5 129505907 129506088 -23031171 + B2_Mm2 SINE B2 1 190 -5 1 1573 228 297 16 105 chr5 129506090 129506214 -23031045 + MT2B LTR ERVL 151 263 -338 1 1573 662 236 14 0 chr5 129506110 129506250 -23031009 + ID_B1 SINE B4 83 224 0 1 1573 227 222 0 0 chr5 129507026 129507071 -23030188 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1 1573 632 190 0 23 chr5 129507072 129507201 -23030058 + B1_Mur4 SINE Alu 25 150 0 1 1573 234 0 0 0 chr5 129507465 129507491 -23029768 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1573 289 222 51 89 chr5 129507865 129507944 -23029315 + PB1D7 SINE Alu 16 91 -29 1 1573 329 223 61 50 chr5 129507917 129508016 -23029243 + MT2B LTR ERVL 158 257 -344 1 1573 669 138 55 0 chr5 129507944 129508053 -23029206 + B1_Mur3 SINE Alu 33 147 -2 2 1573 309 217 72 0 chr5 129508101 129508170 -23029089 + B1_Mus2 SINE Alu 48 121 -26 2 1573 200 188 0 0 chr5 129508193 129508225 -23029034 + G-rich Low_complexity Low_complexity 2 33 0 2 1573 1519 62 16 0 chr5 129509029 129509221 -23028038 - B2_Mm2 SINE B2 0 195 1 2 1573 292 349 0 0 chr5 129509231 129509317 -23027942 - PB1D10 SINE Alu -5 112 27 2 1573 1283 114 5 5 chr5 129509593 129509778 -23027481 + B2_Mm1t SINE B2 1 185 -8 2 1573 812 269 63 35 chr5 129509887 129510141 -23027118 - B4 SINE B4 -30 262 2 2 1573 1110 81 0 0 chr5 129510194 129510330 -23026929 + B1_Mus1 SINE Alu 3 138 -10 2 1573 550 291 50 0 chr5 129510340 129510481 -23026778 + RSINE1 SINE B4 3 150 -15 2 1573 1460 235 103 41 chr5 129510508 129510973 -23026286 + RCHARR1 DNA MER1_type 478 971 -3 2 1573 240 35 0 0 chr5 129511973 129512002 -23025257 + (CAG)n Simple_repeat Simple_repeat 1 29 0 3 1573 508 229 298 12 chr5 129512129 129512297 -23024962 + B3 SINE B2 1 216 0 3 1573 1010 125 0 20 chr5 129512830 129512977 -23024282 - B1_Mur4 SINE Alu -6 144 1 3 1573 271 293 81 0 chr5 129512977 129513100 -23024159 + L1MA6 LINE L1 6143 6275 -25 3 1573 225 0 0 0 chr5 129513400 129513425 -23023834 + (A)n Simple_repeat Simple_repeat 1 25 0 3 1573 236 250 111 0 chr5 129514657 129514729 -23022530 + ID4 SINE ID 2 81 -2 3 1573 721 287 26 102 chr5 129514895 129515279 -23021980 - ORR1E LTR MaLR -3 356 2 3 1573 1152 257 45 0 chr5 129515404 129515669 -23021590 + MTE2b LTR MaLR 43 319 -60 3 1573 333 0 0 0 chr5 129515675 129515712 -23021547 + (TC)n Simple_repeat Simple_repeat 1 37 0 3 1573 285 29 0 0 chr5 129515712 129515745 -23021514 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1573 583 268 47 0 chr5 129515759 129515886 -23021373 - RSINE1 SINE B4 -29 136 4 4 1573 204 158 0 0 chr5 129516059 129516097 -23021162 + GA-rich Low_complexity Low_complexity 2 39 0 4 1573 253 217 0 0 chr5 129516106 129516166 -23021093 + T-rich Low_complexity Low_complexity 1 60 0 4 1573 900 130 13 27 chr5 129516168 129516318 -23020941 - B1_Mur4 SINE Alu -1 149 2 4 1573 531 237 62 103 chr5 129516398 129516544 -23020715 - ID_B1 SINE B4 -1 223 84 4 1573 329 248 57 38 chr5 129516583 129516688 -23020571 + PB1D7 SINE Alu 12 118 -2 4 1573 1252 113 21 31 chr5 129516798 129516990 -23020269 - B2_Mm2 SINE B2 -5 190 1 4 1573 242 302 0 0 chr5 129517083 129517136 -23020123 - ID4_ SINE ID -29 54 2 4 1573 389 231 0 21 chr5 129517145 129517238 -23020021 - ID_B1 SINE B4 -1 223 133 4 1573 338 241 125 0 chr5 129517152 129517264 -23019995 - B1F2 SINE Alu -8 141 16 4 1573 368 284 37 15 chr5 129517642 129517778 -23019481 + B1F SINE Alu 2 140 -9 5 1573 304 183 33 16 chr5 129517799 129517860 -23019399 + ID2 SINE ID 3 64 -19 5 1573 239 310 83 65 chr5 129517882 129518051 -23019208 - MamRep4096 DNA hAT? -164 262 91 5 1573 387 73 0 0 chr5 129518127 129518182 -23019077 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1573 242 272 247 25 chr5 129518550 129518668 -23018591 - ID_B1 SINE B4 0 224 82 5 1573 548 163 444 0 chr5 129518683 129518836 -23018423 - ID_B1 SINE B4 -1 223 3 5 1573 240 239 44 15 chr5 129518897 129518965 -23018294 - MLT1A LTR MaLR -272 102 33 5 1573 227 267 0 0 chr5 129519008 129519053 -23018206 + tRNA-Ala-GCY_ tRNA tRNA 31 75 0 5 1573 183 250 54 0 chr5 129519143 129519199 -23018060 + L2c LINE L2 3038 3096 -291 5 1573 816 293 72 59 chr5 129519336 129519641 -23017618 - MER2 DNA MER2_type -14 331 23 5 1573 1203 43 0 0 chr5 129520252 129520392 -23016867 - B1_Mus1 SINE Alu -8 140 1 6 1573 577 277 96 80 chr5 129520738 129521245 -23016014 + RMER4B LTR ERVK 1 579 -6 6 1573 1157 96 0 0 chr5 129521250 129521396 -23015863 + B1_Mus1 SINE Alu 1 146 -2 6 1573 198 0 0 0 chr5 129521404 129521426 -23015833 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 6 1573 199 374 64 43 chr5 129521550 129521737 -23015522 - L2b LINE L2 -245 3130 2940 6 1573 378 0 0 0 chr5 129521843 129521885 -23015374 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 6 1573 1173 76 25 6 chr5 129521885 129522038 -23015221 - B2_Mm2 SINE B2 -36 159 3 6 1573 229 337 0 11 chr5 129522059 129522149 -23015110 + L1MC4 LINE L1 7438 7526 -516 6 1573 202 73 24 24 chr5 129522333 129522375 -23014884 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 6 1573 462 167 0 0 chr5 129522406 129522490 -23014769 + GA-rich Low_complexity Low_complexity 1 84 0 6 1573 300 338 167 0 chr5 129522702 129522906 -23014353 + L1MC4 LINE L1 7596 7833 -209 6 1573 821 169 218 11 chr5 129522909 129523088 -23014171 + B3 SINE B2 1 216 0 7 1573 591 189 81 0 chr5 129523280 129523391 -23013868 + RSINE1 SINE B4 13 132 -33 7 1573 473 289 230 12 chr5 129523419 129523460 -23013799 - MT2A LTR ERVL 0 533 493 7 1573 423 0 0 0 chr5 129523460 129523507 -23013752 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1573 473 342 225 26 chr5 129523507 129523731 -23013528 - MT2A LTR ERVL -41 492 6 7 1573 477 297 69 52 chr5 129523731 129523905 -23013354 - MTEa LTR MaLR -197 182 6 7 1573 385 274 70 17 chr5 129523969 129524084 -23013175 - MTEa LTR MaLR -1 378 258 7 1573 773 224 304 34 chr5 129524282 129524578 -23012681 - MTEa LTR MaLR -3 376 1 7 1573 237 190 16 49 chr5 129528511 129528572 -23008687 - B3 SINE B2 -135 81 23 7 1573 461 121 174 11 chr5 129529470 129529562 -23007697 + B1_Mur3 SINE Alu 37 143 -6 7 1573 379 218 77 29 chr5 129529562 129529574 -23007685 + B4 SINE B4 122 230 -62 7 1573 1037 77 84 0 chr5 129530476 129530631 -23006628 - B2_Mm2 SINE B2 -27 168 1 8 1573 2479 167 90 32 chr5 129530668 129531226 -23006033 - Lx5 LINE L1 -86 6964 6375 8 1573 241 114 0 102 chr5 129531239 129531288 -23005971 - Lx5 LINE L1 -755 6295 6252 8 1573 2057 157 120 32 chr5 129531696 129532137 -23005122 + RMER15 LTR ERVL 96 575 0 8 1573 547 287 37 0 chr5 129532408 129532544 -23004715 + RSINE1 SINE B4 2 142 -23 8 1573 1349 86 37 0 chr5 129532636 129532823 -23004436 - B2_Mm2 SINE B2 -1 194 1 8 1573 209 33 33 0 chr5 129532833 129532863 -23004396 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8 1573 1335 80 29 0 chr5 129532863 129533038 -23004221 - B2_Mm1t SINE B2 -13 180 1 8 1573 2518 86 3 0 chr5 129533131 129533457 -23003802 - ORR1A2 LTR MaLR 0 327 1 8 1573 9063 118 70 38 chr5 129533457 129534406 -23002853 - ORR1A2-int LTR MaLR 0 1963 1043 8 1573 1070 31 79 0 chr5 129534406 129534533 -23002726 - B1_Mm SINE Alu -10 137 1 8 1573 9063 118 70 38 chr5 129534533 129535201 -23002058 - ORR1A2-int LTR MaLR -921 1042 294 8 1573 999 148 5 141 chr5 129535289 129535502 -23001757 + URR1B DNA MER1_type 1 184 -41 8 1573 989 41 8 0 chr5 129535708 129535831 -23001428 - B1_Mus1 SINE Alu 0 148 25 9 1573 764 260 77 53 chr5 129535839 129536046 -23001213 - ID_B1 SINE B4 -8 216 5 9 1573 233 250 30 30 chr5 129536160 129536226 -23001033 - RSINE1 SINE B4 -97 68 3 9 1573 562 172 81 0 chr5 129536248 129536347 -23000912 - PB1D10 SINE Alu -10 107 1 9 1573 1407 95 16 0 chr5 129536676 129536866 -23000393 + B2_Mm2 SINE B2 1 193 -2 9 1573 611 60 12 0 chr5 129537376 129537460 -22999799 + (TA)n Simple_repeat Simple_repeat 2 86 0 9 1573 429 72 0 5 chr5 129537466 129537530 -22999729 - B2_Mm2 SINE B2 -107 109 48 9 1573 1425 73 11 0 chr5 129537560 129537739 -22999520 - B2_Mm2 SINE B2 -14 181 1 9 1573 279 0 0 0 chr5 129537770 129537801 -22999458 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 9 1573 1249 41 7 0 chr5 129537801 129537946 -22999313 - B1_Mus2 SINE Alu 0 147 2 9 1573 327 294 141 88 chr5 129538386 129538534 -22998725 - MLT1B LTR MaLR -17 373 242 1 1573 1573 154 119 106 chr5 129538534 129538912 -22998347 - ORR1C2 LTR MaLR 0 384 2 1 1573 327 294 141 88 chr5 129538912 129539117 -22998142 - MLT1B LTR MaLR -149 241 1 1 1573 792 258 10 21 chr5 129539356 129539550 -22997709 - B3A SINE B2 -6 192 1 1 1573 714 154 161 61 chr5 129539737 129539917 -22997342 + B3A SINE B2 1 198 0 1 1573 263 344 10 0 chr5 129539918 129540014 -22997245 + L1MC1 LINE L1 5439 5535 -798 1 1573 722 288 29 16 chr5 129540033 129540277 -22996982 + L1MC1 LINE L1 5584 5830 -503 1 1573 752 300 79 8 chr5 129540277 129540529 -22996730 + B4A SINE B4 1 270 -22 1 1573 441 0 0 0 chr5 129540555 129540604 -22996655 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1573 474 304 178 19 chr5 129540616 129541049 -22996210 + L1MC1 LINE L1 5829 6330 -3 1 1573 237 198 0 147 chr5 129541276 129541371 -22995888 - PB1D10 SINE Alu -35 82 2 1 1573 649 249 56 43 chr5 129541445 129541635 -22995624 + B3 SINE B2 2 195 0 1 1573 941 137 0 33 chr5 129541657 129541808 -22995451 + B1_Mus1 SINE Alu 2 147 -1 1 1573 249 33 0 0 chr5 129541811 129541841 -22995418 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1573 852 114 0 0 chr5 129541845 129541976 -22995283 + (GGAA)n Simple_repeat Simple_repeat 3 133 0 1 1573 1046 274 9 0 chr5 129542118 129542341 -22994918 + B4 SINE B4 3 227 -65 1 1573 723 273 30 12 chr5 129542349 129542516 -22994743 + ID_B1 SINE B4 1 170 -54 1 1573 26 93 0 0 chr5 129542526 129542601 -22994658 + AT_rich Low_complexity Low_complexity 1 75 0 1 1573 677 241 36 10 chr5 129542622 129542815 -22994444 + B3A SINE B2 1 198 0 1 1573 985 130 111 0 chr5 129542821 129542983 -22994276 + B2_Mm2 SINE B2 2 181 -14 1 1573 884 155 149 0 chr5 129542993 129543010 -22994249 - B2_Mm2 SINE B2 -2 193 177 1 1573 183 80 0 0 chr5 129543010 129543035 -22994224 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 1573 884 155 149 0 chr5 129543035 129543185 -22994074 - B2_Mm2 SINE B2 -19 176 2 1 1573 549 232 0 0 chr5 129543241 129543353 -22993906 + RSINE1 SINE B4 12 123 -42 1 1573 26 0 0 0 chr5 129543390 129543416 -22993843 + AT_rich Low_complexity Low_complexity 1 26 0 1 1573 239 327 0 0 chr5 129543433 129543488 -22993771 + B4 SINE B4 215 269 -23 1 1573 216 0 0 0 chr5 129543488 129543512 -22993747 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1573 756 61 0 0 chr5 129543512 129543610 -22993649 + (GA)n Simple_repeat Simple_repeat 1 98 0 1 1573 273 83 0 0 chr5 129543882 129543918 -22993341 + U2 snRNA snRNA 1 36 -152 1 1573 384 286 7 26 chr5 129543992 129544143 -22993116 - L1M4 LINE L1 -352 5822 5675 1 1573 865 135 0 0 chr5 129544188 129544314 -22992945 + B1_Mus1 SINE Alu 2 127 -21 1 1573 390 299 73 20 chr5 129544192 129544342 -22992917 + B4 SINE B4 90 247 -45 1 1573 1323 72 50 6 chr5 129544366 129544548 -22992711 + B2_Mm2 SINE B2 1 190 -5 1 1573 758 212 0 62 chr5 129544571 129544732 -22992527 - RSINE1 SINE B4 -12 153 3 1 1573 329 246 141 40 chr5 129544746 129544924 -22992335 - B3 SINE B2 -3 192 1 1 1573 1605 219 22 25 chr5 129544926 129545249 -22992010 - MTEa LTR MaLR -57 322 1 1 1573 331 326 68 60 chr5 129545327 129545562 -22991697 - L1MC LINE L1 -1102 5044 4808 1 1573 27 0 0 0 chr5 129546390 129546417 -22990842 + AT_rich Low_complexity Low_complexity 1 27 0 1 1573 4851 71 3 5 chr5 129546420 129547046 -22990213 - L1_Mus3 LINE L1 -6 6632 6008 1 1573 1663 215 45 17 chr5 129547158 129547513 -22989746 + MTEa LTR MaLR 13 377 -2 1 1573 1265 103 23 0 chr5 129547539 129547713 -22989546 + B2_Mm1t SINE B2 2 179 -14 1 1573 391 92 333 9 chr5 129547726 129547834 -22989425 + B2_Mm2 SINE B2 47 189 -6 1 1573 321 326 153 44 chr5 129547884 129548224 -22989035 - L1MD3 LINE L1 -958 7037 6661 1 1573 1301 146 28 9 chr5 129548359 129548574 -22988685 - URR1B DNA MER1_type 0 225 7 1 1573 423 195 0 0 chr5 129548580 129548703 -22988556 + (TG)n Simple_repeat Simple_repeat 1 123 0 1 1573 440 291 0 9 chr5 129548703 129548814 -22988445 - RSINE1 SINE B4 0 165 56 1 1573 1201 68 0 0 chr5 129548943 129549090 -22988169 - B1_Mus2 SINE Alu 0 147 1 1 1573 190 304 0 0 chr5 129549445 129549501 -22987758 - L3 LINE CR1 -2206 2283 2228 1 1573 538 261 29 22 chr5 129549533 129549670 -22987589 + B1F SINE Alu 10 147 -2 1 1573 923 139 0 6 chr5 129549670 129549851 -22987408 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1573 649 228 187 42 chr5 129550174 129550408 -22986851 - RMER4B LTR ERVK 0 585 343 1 1573 562 186 4 8 chr5 129550445 129550712 -22986547 + (CAG)n Simple_repeat Simple_repeat 1 265 0 1 1573 1395 89 0 6 chr5 129550716 129550896 -22986363 - B2_Mm2 SINE B2 -16 179 1 1 1573 1052 168 76 45 chr5 129550897 129551121 -22986138 - RMER4B LTR ERVK -338 247 17 1 1573 608 289 65 12 chr5 129551278 129551446 -22985813 - B3 SINE B2 -6 210 34 1 1573 21 0 0 0 chr5 129551454 129551475 -22985784 + AT_rich Low_complexity Low_complexity 1 21 0 1 1573 287 127 0 241 chr5 129551475 129551558 -22985701 - B1F SINE Alu -13 136 74 1 1573 229 125 0 0 chr5 129551585 129551617 -22985642 - B3 SINE B2 -177 39 8 1 1573 258 105 0 0 chr5 129551829 129551867 -22985392 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1573 298 236 0 40 chr5 129552653 129552728 -22984531 - ID4_ SINE ID -8 75 4 1 1573 243 300 25 12 chr5 129552750 129552831 -22984428 + ID4_ SINE ID 2 83 0 1 1573 208 186 0 33 chr5 129552831 129552892 -22984367 + GA-rich Low_complexity Low_complexity 2 60 0 1 1573 844 128 15 8 chr5 129552896 129553030 -22984229 + B1_Mur2 SINE Alu 14 148 -1 1 1573 243 0 0 0 chr5 129553033 129553060 -22984199 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1573 489 34 0 0 chr5 129553060 129553118 -22984141 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1573 242 265 0 56 chr5 129553241 129553313 -22983946 + ZP3AR Satellite Satellite 11 78 -134 1 1573 661 321 82 15 chr5 129553275 129553544 -22983715 + B4A SINE B4 1 287 -5 1 1573 223 259 0 17 chr5 129553553 129553612 -22983647 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1573 3010 113 124 8 chr5 129553623 129554130 -22983129 + RMER4B LTR ERVK 20 585 0 1 1573 207 243 27 41 chr5 129554130 129554203 -22983056 + (CATA)n Simple_repeat Simple_repeat 1 72 0 1 1573 180 0 0 0 chr5 129554377 129554397 -22982862 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1573 278 246 0 30 chr5 129554433 129554500 -22982759 + CT-rich Low_complexity Low_complexity 3 67 0 1 1573 213 358 0 36 chr5 129554501 129554585 -22982674 - ID4_ SINE ID -1 82 2 1 1573 519 283 26 77 chr5 129554716 129554911 -22982348 + B4A SINE B4 1 185 -107 1 1573 434 101 14 0 chr5 129554952 129555021 -22982238 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 1573 714 111 19 0 chr5 129555026 129555134 -22982125 - B1_Mur3 SINE Alu 0 149 40 1 1573 387 0 0 0 chr5 129555678 129555721 -22981538 + (TTTTTG)n Simple_repeat Simple_repeat 6 48 0 1 1573 784 107 25 0 chr5 129555721 129555842 -22981417 - B1_Mur3 SINE Alu 0 149 26 1 1573 255 61 0 0 chr5 129555850 129555883 -22981376 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1 1573 1281 98 11 21 chr5 129555904 129556092 -22981167 - B2_Mm1t SINE B2 -7 186 1 1 1573 1352 62 51 6 chr5 129556095 129556273 -22980986 - B2_Mm2 SINE B2 -8 187 2 1 1573 627 206 65 14 chr5 129556276 129556414 -22980845 - B1F2 SINE Alu 0 149 5 1 1573 1475 270 51 2 chr5 129556422 129556815 -22980444 - Lx5 LINE L1 -5 7045 6634 1 1573 219 113 32 16 chr5 129556817 129556880 -22980379 + T-rich Low_complexity Low_complexity 6 69 0 1 1573 1280 54 0 0 chr5 129556880 129557028 -22980231 - B1_Mus1 SINE Alu 0 148 1 1 1573 660 174 128 8 chr5 129557320 129557453 -22979806 - B1_Mur4 SINE Alu 0 150 2 1 1573 241 129 42 28 chr5 129557549 129557621 -22979638 + CT-rich Low_complexity Low_complexity 2 74 0 1 1573 742 131 11 44 chr5 129557604 129557787 -22979472 + C-rich Low_complexity Low_complexity 3 179 0 1 1573 302 111 0 0 chr5 129557793 129557838 -22979421 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 1 1573 542 172 100 33 chr5 129557838 129557958 -22979301 - B1_Mur2 SINE Alu -1 148 21 1 1573 348 336 0 0 chr5 129557968 129558084 -22979175 - PB1D10 SINE Alu -1 116 1 1 1573 500 222 0 0 chr5 129558365 129558464 -22978795 - RSINE1 SINE B4 -64 101 3 1 1573 324 229 72 0 chr5 129559486 129559569 -22977690 - B1F2 SINE Alu -21 128 40 1 1573 310 176 171 26 chr5 129559572 129559648 -22977611 - B1F2 SINE Alu -21 128 42 1 1573 597 231 58 0 chr5 129559650 129559771 -22977488 - B1_Mur1 SINE Alu -21 128 1 1 1573 262 43 0 60 chr5 129559888 129559938 -22977321 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1573 638 217 97 13 chr5 129560057 129560211 -22977048 - MTE2b LTR MaLR -11 368 202 1 1573 327 137 41 0 chr5 129560211 129560284 -22976975 + GA-rich Low_complexity Low_complexity 1 76 0 1 1573 489 179 56 19 chr5 129560291 129560507 -22976752 - RMER17D LTR ERVK -420 469 246 1 1573 755 245 31 0 chr5 129560462 129560621 -22976638 - MTE2b LTR MaLR -170 209 46 1 1573 625 210 11 11 chr5 129561359 129561537 -22975722 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1 1573 271 241 17 0 chr5 129561538 129561596 -22975663 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 1 1573 669 187 29 0 chr5 129561599 129561770 -22975489 + (CATA)n Simple_repeat Simple_repeat 4 179 0 1 1573 312 268 67 44 chr5 129561775 129561865 -22975394 - B1_Mur2 SINE Alu -56 93 2 1 1573 231 259 10 115 chr5 129561785 129561881 -22975378 - MT2B LTR ERVL -363 238 153 1 1573 1114 222 0 10 chr5 129562239 129562448 -22974811 + B3 SINE B2 10 216 0 1 1573 407 365 5 25 chr5 129563615 129563812 -22973447 + B3A SINE B2 1 193 -5 1 1573 361 347 50 40 chr5 129564240 129564441 -22972818 + L1M5 LINE L1 4553 4755 -1391 2 1573 291 259 73 18 chr5 129564721 129564831 -22972428 - L1MB3 LINE L1 0 6183 6068 2 1573 315 0 0 0 chr5 129564836 129564871 -22972388 + (TTG)n Simple_repeat Simple_repeat 1 35 0 2 1573 795 21 0 0 chr5 129564871 129564964 -22972295 + (TTC)n Simple_repeat Simple_repeat 1 93 0 2 1573 230 354 24 12 chr5 129564983 129565066 -22972193 - ORR1E LTR MaLR -11 408 325 2 1573 463 192 0 0 chr5 129565161 129565239 -22972020 - B3A SINE B2 -43 155 78 2 1573 295 255 94 125 chr5 129565181 129565405 -22971854 - ORR1E LTR MaLR -112 247 31 2 1573 1403 237 137 6 chr5 129565455 129565812 -22971447 + MTD LTR MaLR 16 419 0 2 1573 244 212 254 9 chr5 129565813 129565927 -22971332 - L1MB3 LINE L1 -196 5978 5837 2 1573 318 291 201 35 chr5 129566734 129567022 -22970237 - MLT1D LTR MaLR -62 443 108 2 1573 228 304 89 63 chr5 129568621 129568779 -22968480 - MER5A1 DNA MER1_type -4 162 1 2 1573 207 214 0 0 chr5 129570389 129570431 -22966828 + T-rich Low_complexity Low_complexity 1 42 0 2 1573 657 92 0 0 chr5 129570571 129570669 -22966590 + (TG)n Simple_repeat Simple_repeat 2 99 0 2 1573 246 340 79 118 chr5 129570669 129570819 -22966440 - B4A SINE B4 -23 269 1 2 1573 854 146 0 0 chr5 129570819 129570949 -22966310 - B3 SINE B2 -86 130 1 2 1573 708 209 21 88 chr5 129570949 129571143 -22966116 - B3A SINE B2 -1 197 17 2 1573 586 326 72 22 chr5 129571159 129571382 -22965877 - B4A SINE B4 -58 234 1 2 1573 459 52 0 0 chr5 129571533 129571591 -22965668 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1573 552 179 0 0 chr5 129572701 129572813 -22964446 + (ATG)n Simple_repeat Simple_repeat 2 113 0 2 1573 236 185 19 0 chr5 129573046 129573100 -22964159 + CT-rich Low_complexity Low_complexity 4 58 0 2 1573 333 288 194 17 chr5 129574064 129574244 -22963015 + MLT1A0 LTR MaLR 1 212 -153 2 1573 458 261 35 31 chr5 129574253 129574422 -22962837 - MTEa LTR MaLR -10 369 181 2 1573 397 291 31 16 chr5 129574565 129574694 -22962565 + MLT1A0 LTR MaLR 235 365 0 2 1573 232 338 70 25 chr5 129574813 129574971 -22962288 + Charlie8 DNA MER1_type 50 214 -2214 2 1573 254 152 17 0 chr5 129574996 129575055 -22962204 + GA-rich Low_complexity Low_complexity 1 60 0 2 1573 411 226 16 28 chr5 129575109 129575291 -22961968 + GA-rich Low_complexity Low_complexity 1 180 0 2 1573 703 255 125 0 chr5 129575667 129575859 -22961400 - B3 SINE B2 0 216 1 2 1573 1195 62 7 0 chr5 129576021 129576166 -22961093 + B1_Mus2 SINE Alu 2 147 0 2 1573 207 0 0 0 chr5 129576179 129576202 -22961057 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1573 384 22 0 0 chr5 129576326 129576371 -22960888 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1573 827 176 0 7 chr5 129576445 129576582 -22960677 + B1_Mur4 SINE Alu 2 137 -13 2 1573 183 80 0 0 chr5 129576584 129576609 -22960650 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1573 1007 194 92 0 chr5 129577385 129577591 -22959668 - URR1B DNA MER1_type 0 225 1 2 1573 21 0 0 0 chr5 129578545 129578566 -22958693 + AT_rich Low_complexity Low_complexity 1 21 0 2 1573 325 269 16 150 chr5 129578619 129578746 -22958513 + PB1D10 SINE Alu 1 110 -7 2 1573 273 350 30 61 chr5 129578782 129578980 -22958279 - RMER15 LTR ERVL -59 516 325 2 1573 261 83 0 0 chr5 129579929 129579965 -22957294 + (TC)n Simple_repeat Simple_repeat 1 36 0 2 1573 536 182 17 6 chr5 129580096 129580273 -22956986 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1573 1108 247 11 11 chr5 129581683 129581949 -22955310 - Lx6 LINE L1 -12 7448 7183 2 1573 629 204 18 30 chr5 129581959 129582152 -22955107 - B3 SINE B2 -6 189 2 2 1573 928 167 31 6 chr5 129582320 129582483 -22954776 + MTC LTR MaLR 1 167 -240 2 1573 972 99 7 121 chr5 129582775 129583068 -22954191 + MTC LTR MaLR 166 400 0 2 1573 590 241 45 0 chr5 129583147 129583280 -22953979 + B1F SINE Alu 1 139 -10 2 1573 1086 325 17 15 chr5 129583603 129584134 -22953125 - L1MD LINE L1 -3046 3100 2569 2 1573 225 324 0 40 chr5 129584278 129584352 -22952907 - MLT2B2 LTR ERVL -222 293 223 2 1573 187 248 24 36 chr5 129584399 129584566 -22952693 + GA-rich Low_complexity Low_complexity 5 169 0 2 1573 767 176 28 7 chr5 129584594 129584737 -22952522 + B1_Mus2 SINE Alu 2 147 0 2 1573 216 0 0 0 chr5 129585263 129585287 -22951972 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1573 1675 36 0 0 chr5 129585353 129585545 -22951714 - B2_Mm1a SINE B2 0 193 2 2 1573 1083 59 0 0 chr5 129585545 129585680 -22951579 + B1_Mus1 SINE Alu 14 148 0 2 1573 339 65 0 0 chr5 129585680 129585726 -22951533 + (A)n Simple_repeat Simple_repeat 1 46 0 2 1573 266 125 21 0 chr5 129585946 129585994 -22951265 + (TTCTCC)n Simple_repeat Simple_repeat 1 49 0 2 1573 1256 103 37 11 chr5 129585994 129586181 -22951078 - B2_Mm2 SINE B2 -3 192 1 2 1573 191 286 106 12 chr5 129586467 129586552 -22950707 - L4 LINE RTE -1349 680 588 2 1573 972 139 0 0 chr5 129587779 129587923 -22949336 - B1_Mur3 SINE Alu -5 144 1 2 1573 525 301 18 29 chr5 129588200 129588371 -22948888 + HAL1-2a_MD LINE L1 2345 2513 -511 2 1573 413 316 0 0 chr5 129588375 129588473 -22948786 + (CCA)n Simple_repeat Simple_repeat 1 98 0 2 1573 506 261 6 0 chr5 129588474 129588650 -22948609 + (CAT)n Simple_repeat Simple_repeat 1 177 0 2 1573 194 221 0 29 chr5 129588662 129588732 -22948527 + (CAT)n Simple_repeat Simple_repeat 1 68 0 2 1573 1037 238 5 40 chr5 129588753 129588934 -22948325 - B3 SINE B2 -1 215 42 2 1573 2523 97 20 8 chr5 129588934 129589289 -22947970 + RLTR15 LTR ERVK 1 359 0 2 1573 1037 238 5 40 chr5 129589289 129589330 -22947929 - B3 SINE B2 -175 41 1 2 1573 228 292 176 60 chr5 129589390 129589579 -22947680 - MIR SINE MIR -1 261 50 2 1573 189 121 0 0 chr5 129590455 129590488 -22946771 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 2 1573 2045 105 32 79 chr5 129590500 129590841 -22946418 - ORR1A3 LTR MaLR -1 325 1 2 1573 1237 48 0 0 chr5 129590993 129591140 -22946119 - B1_Mus2 SINE Alu 0 147 1 2 1573 615 289 0 39 chr5 129591172 129591327 -22945932 - RSINE1 SINE B4 -15 150 2 2 1573 621 230 29 29 chr5 129592188 129592327 -22944932 + B1F1 SINE Alu 10 148 -1 2 1573 354 205 96 66 chr5 129592205 129592341 -22944918 - YREP_Mm Unknown Unknown -1518 294 155 2 1573 183 42 0 0 chr5 129592342 129592366 -22944893 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 2 1573 925 190 124 21 chr5 129592478 129592636 -22944623 + B3 SINE B2 2 181 -35 2 1573 486 103 0 0 chr5 129592636 129592714 -22944545 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1573 925 190 124 21 chr5 129592714 129592748 -22944511 + B3 SINE B2 182 214 -2 2 1573 1205 206 5 0 chr5 129592802 129593011 -22944248 + ID_B1 SINE B4 1 210 -14 2 1573 312 27 0 0 chr5 129593011 129593048 -22944211 + (CAAT)n Simple_repeat Simple_repeat 4 40 0 2 1573 270 193 0 0 chr5 129593185 129593242 -22944017 + (TATG)n Simple_repeat Simple_repeat 2 58 0 2 1573 558 0 0 0 chr5 129593265 129593327 -22943932 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2 1573 1149 78 0 0 chr5 129593347 129593526 -22943733 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 2 1573 441 36 0 0 chr5 129593563 129593618 -22943641 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1573 461 205 50 67 chr5 129593618 129593738 -22943521 - B3A SINE B2 -77 121 4 2 1573 921 212 32 36 chr5 129594282 129594458 -22942801 + ID_B1 SINE B4 5 180 -44 2 1573 464 0 0 18 chr5 129594458 129594515 -22942744 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 2 1573 921 212 32 36 chr5 129594515 129594558 -22942701 + ID_B1 SINE B4 181 223 -1 2 1573 315 0 0 0 chr5 129594563 129594598 -22942661 + (CAA)n Simple_repeat Simple_repeat 1 35 0 2 1573 853 177 7 26 chr5 129594609 129594760 -22942499 + B1_Mus1 SINE Alu 1 148 0 2 1573 391 235 44 29 chr5 129594976 129595112 -22942147 - L1MB7 LINE L1 -14 6170 6033 2 1573 313 345 62 102 chr5 129595132 129595358 -22941901 - HAL1-3A_ME LINE L1 -667 2191 1975 2 1573 523 0 0 29 chr5 129595379 129595448 -22941811 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 2 1573 255 264 16 40 chr5 129595499 129595625 -22941634 + (TCTCTG)n Simple_repeat Simple_repeat 4 126 0 2 1573 278 129 0 16 chr5 129595634 129595697 -22941562 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1573 186 167 0 0 chr5 129596148 129596184 -22941075 + T-rich Low_complexity Low_complexity 1 36 0 2 1573 1136 242 38 144 chr5 129597305 129597390 -22939869 - MTEa LTR MaLR 0 379 329 2 1573 234 0 0 0 chr5 129597390 129597416 -22939843 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2 1573 1136 242 38 144 chr5 129597416 129597754 -22939505 - MTEa LTR MaLR -51 328 1 2 1573 387 0 0 0 chr5 129597887 129597930 -22939329 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1573 218 276 88 66 chr5 129598808 129598944 -22938315 - L2a LINE L2 -80 3346 3208 2 1573 672 255 28 7 chr5 129599288 129599430 -22937829 + RSINE1 SINE B4 4 148 -17 2 1573 267 268 0 49 chr5 129599467 129599569 -22937690 + L1MA7 LINE L1 6145 6241 -50 2 1573 684 237 15 0 chr5 129599671 129599806 -22937453 - B1_Mur1 SINE Alu -11 138 2 2 1573 181 293 224 25 chr5 129600605 129600766 -22936493 - MIR SINE MIR -10 252 60 2 1573 720 217 34 85 chr5 129601233 129601409 -22935850 - B3A SINE B2 -5 190 24 2 1573 591 130 16 53 chr5 129601610 129601797 -22935462 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2 1573 312 345 0 0 chr5 129601981 129602152 -22935107 + (CA)n Simple_repeat Simple_repeat 1 171 0 2 1573 243 295 16 8 chr5 129602259 129602382 -22934877 + (CA)n Simple_repeat Simple_repeat 2 125 0 2 1573 314 341 14 14 chr5 129604649 129604789 -22932470 + CT-rich Low_complexity Low_complexity 1 140 0 2 1573 227 31 31 0 chr5 129604925 129604957 -22932302 + (CCCCCA)n Simple_repeat Simple_repeat 3 35 0 2 1573 220 241 56 0 chr5 129605638 129605692 -22931567 - L3 LINE CR1 -5 4484 4428 2 1573 1218 187 5 0 chr5 129606165 129606368 -22930891 - B3 SINE B2 -12 204 1 2 1573 639 39 0 0 chr5 129606666 129606744 -22930515 + (CA)n Simple_repeat Simple_repeat 1 78 0 2 1573 194 322 61 76 chr5 129606847 129606978 -22930281 - L2b LINE L2 -206 3169 3041 2 1573 200 163 23 0 chr5 129607341 129607384 -22929875 + CT-rich Low_complexity Low_complexity 5 48 0 2 1573 180 0 0 0 chr5 129607650 129607670 -22929589 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1573 324 235 44 66 chr5 129607794 129607885 -22929374 + PB1D7 SINE Alu 32 120 0 3 1573 1001 295 14 51 chr5 129607897 129608311 -22928948 - Lx9 LINE L1 -267 7377 6979 3 1573 423 0 0 0 chr5 129608764 129608811 -22928448 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1573 467 264 40 0 chr5 129609270 129609395 -22927864 + MTE2b LTR MaLR 1 130 -249 3 1573 911 258 67 159 chr5 129609391 129609824 -22927435 - MTD LTR MaLR -9 410 18 3 1573 559 262 180 11 chr5 129609825 129610014 -22927245 + MTE2b LTR MaLR 158 378 -1 3 1573 1164 33 0 62 chr5 129610235 129610427 -22926832 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 3 1573 277 208 12 49 chr5 129610427 129610508 -22926751 + CT-rich Low_complexity Low_complexity 3 80 0 3 1573 368 276 68 79 chr5 129610508 129610530 -22926729 - B4 SINE B4 -47 245 107 3 1573 763 174 8 0 chr5 129610530 129610651 -22926608 - B1_Mur2 SINE Alu -5 144 23 3 1573 369 0 0 0 chr5 129610651 129610692 -22926567 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1573 653 226 15 15 chr5 129610692 129610705 -22926554 - B1_Mus1 SINE Alu -125 23 10 3 1573 368 276 68 79 chr5 129610705 129610725 -22926534 - B4 SINE B4 -186 106 72 3 1573 339 271 93 0 chr5 129610739 129610846 -22926413 - PB1D10 SINE Alu 0 117 1 3 1573 608 235 25 50 chr5 129610906 129611067 -22926192 - RSINE1 SINE B4 -2 163 7 3 1573 207 0 0 0 chr5 129611190 129611213 -22926046 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 1573 488 227 0 0 chr5 129611251 129611339 -22925920 - PB1D10 SINE Alu 0 117 30 3 1573 369 0 0 0 chr5 129611441 129611482 -22925777 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1573 259 257 86 0 chr5 129611506 129611576 -22925683 - B4 SINE B4 -214 78 3 3 1573 341 273 38 57 chr5 129611637 129611742 -22925517 + PB1D10 SINE Alu 15 117 0 3 1573 414 0 0 0 chr5 129611748 129611794 -22925465 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1573 311 254 0 0 chr5 129611794 129611865 -22925394 - ID4_ SINE ID -11 72 2 3 1573 293 424 8 8 chr5 129611951 129612189 -22925070 - L1M5 LINE L1 -347 5777 5540 3 1573 418 220 0 48 chr5 129612414 129612600 -22924659 + CT-rich Low_complexity Low_complexity 3 179 0 3 1573 208 281 8 26 chr5 129612621 129612738 -22924521 + CT-rich Low_complexity Low_complexity 1 115 0 3 1573 243 333 12 0 chr5 129612746 129612827 -22924432 - ID4_ SINE ID 0 83 2 3 1573 238 94 75 0 chr5 129612898 129612951 -22924308 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 3 1573 362 259 71 0 chr5 129613106 129613191 -22924068 - ID_B1 SINE B4 -16 208 118 3 1573 777 160 14 27 chr5 129613344 129613492 -22923767 - B1_Mur3 SINE Alu -2 147 2 3 1573 492 202 48 9 chr5 129613507 129613612 -22923647 - PB1D9 SINE Alu -1 119 11 3 1573 2906 163 22 28 chr5 129613613 129613713 -22923546 - RLTR20A LTR ERVK 0 541 437 3 1573 441 0 0 0 chr5 129613713 129613762 -22923497 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1573 2906 163 22 28 chr5 129613762 129614205 -22923054 - RLTR20A LTR ERVK -105 436 1 3 1573 21 0 0 0 chr5 129614579 129614600 -22922659 + AT_rich Low_complexity Low_complexity 1 21 0 3 1573 206 256 0 0 chr5 129614619 129614662 -22922597 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1573 288 252 70 122 chr5 129614707 129614879 -22922380 - B4 SINE B4 -116 176 14 3 1573 449 336 35 14 chr5 129616380 129616525 -22920734 + RSINE1 SINE B4 1 148 -17 3 1573 1334 94 16 0 chr5 129616536 129616727 -22920532 - B2_Mm2 SINE B2 0 195 2 3 1573 615 281 0 42 chr5 129616760 129616927 -22920332 + RSINE1 SINE B4 3 162 -3 3 1573 279 54 0 0 chr5 129616953 129616990 -22920269 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 3 1573 22 35 0 0 chr5 129616998 129617027 -22920232 + AT_rich Low_complexity Low_complexity 1 29 0 3 1573 424 100 0 0 chr5 129618373 129618433 -22918826 + BC1_Mm scRNA scRNA 3 62 -90 3 1573 5831 37 0 1 chr5 129618433 129619145 -22918114 + L1_Mus1 LINE L1 5856 6566 -1 3 1573 284 64 21 0 chr5 129619148 129619195 -22918064 + (TTAAA)n Simple_repeat Simple_repeat 3 50 0 3 1573 504 0 0 0 chr5 129619224 129619280 -22917979 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 3 1573 367 287 73 0 chr5 129619423 129619559 -22917700 - B1_Mus2 SINE Alu 0 147 2 3 1573 225 0 0 0 chr5 129621106 129621131 -22916128 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1573 285 29 0 0 chr5 129621131 129621164 -22916095 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1573 1270 100 11 5 chr5 129621341 129621532 -22915727 + B2_Mm2 SINE B2 2 193 -2 3 1573 354 238 0 35 chr5 129621545 129621632 -22915627 - B4A SINE B4 -207 85 2 3 1573 4868 282 59 42 chr5 129622192 129623880 -22913379 - Lx8 LINE L1 -122 7351 5635 3 1573 414 0 0 0 chr5 129623880 129623926 -22913333 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 1573 4868 300 91 16 chr5 129623926 129623979 -22913280 - Lx8 LINE L1 -1839 5634 5552 3 1573 465 19 0 0 chr5 129624088 129624142 -22913117 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1573 277 286 143 0 chr5 129624165 129624263 -22912996 - ID_B1 SINE B4 -112 112 1 3 1573 304 146 11 11 chr5 129625448 129625538 -22911721 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 3 1573 487 252 16 31 chr5 129625638 129625765 -22911494 - PB1 SINE Alu -2 125 1 3 1573 373 66 33 0 chr5 129625823 129625884 -22911375 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1573 775 319 29 11 chr5 129625897 129626176 -22911083 - B4A SINE B4 0 292 9 3 1573 241 275 52 52 chr5 129626234 129626349 -22910910 - L1MA4 LINE L1 -44 6256 6142 3 1573 1063 262 45 65 chr5 129627157 129627212 -22910047 - MTE2a LTR MaLR -13 406 315 3 1573 333 0 0 0 chr5 129627212 129627249 -22910010 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 3 1573 1063 263 46 65 chr5 129627249 129627598 -22909661 - MTE2a LTR MaLR -76 343 1 3 1573 238 191 357 0 chr5 129629135 129629219 -22908040 + URR1A DNA MER1_type 1 114 -112 3 1573 1307 100 16 0 chr5 129629241 129629431 -22907828 + B2_Mm2 SINE B2 3 195 0 3 1573 442 75 234 11 chr5 129629762 129629856 -22907403 + URR1A DNA MER1_type 106 220 -6 3 1574 1425 63 5 0 chr5 129631233 129631422 -22905837 + B2_Mm1a SINE B2 1 190 -3 3 1574 459 319 76 30 chr5 129631856 129632092 -22905167 - L1MC LINE L1 -794 5352 5106 3 1574 378 61 0 0 chr5 129632098 129632147 -22905112 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1574 991 199 27 0 chr5 129632154 129632340 -22904919 + B3 SINE B2 1 191 -25 3 1574 1221 109 178 4 chr5 129632339 129632569 -22904690 + MTC LTR MaLR 11 280 -141 3 1574 517 332 63 30 chr5 129632612 129632947 -22904312 - L1MC LINE L1 -1047 5099 4754 3 1574 473 299 89 30 chr5 129632949 129633118 -22904141 + RMER30 DNA MER1_type 1 179 -23 3 1574 523 309 140 62 chr5 129633170 129633445 -22903814 - L1MC LINE L1 -1424 4722 4452 3 1574 210 71 0 0 chr5 129633445 129633473 -22903786 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1574 523 309 140 62 chr5 129633473 129633811 -22903448 - L1MC LINE L1 -1695 4451 4061 3 1574 207 0 0 0 chr5 129633871 129633894 -22903365 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1574 973 270 46 25 chr5 129635503 129635784 -22901475 + B4 SINE B4 4 290 -2 3 1574 232 282 47 12 chr5 129635793 129635879 -22901380 - L1MB4 LINE L1 -55 6125 6037 3 1574 547 294 107 44 chr5 129636727 129637065 -22900194 - ORR1E LTR MaLR 0 359 1 3 1574 231 206 31 31 chr5 129637862 129637927 -22899332 - MLT1A1 LTR MaLR -266 142 78 3 1574 252 280 0 47 chr5 129637908 129637994 -22899265 - ORR1B1 LTR MaLR -311 83 2 3 1574 609 333 6 6 chr5 129638833 129639014 -22898245 + B3A SINE B2 3 183 -15 3 1574 243 256 104 99 chr5 129639999 129640211 -22897048 + Charlie5 DNA MER1_type 2388 2600 -24 3 1574 1074 192 5 59 chr5 129640517 129640738 -22896521 + ID_B1 SINE B4 1 209 -15 3 1574 568 213 11 17 chr5 129640738 129640919 -22896340 + GA-rich Low_complexity Low_complexity 1 180 0 3 1574 779 183 228 0 chr5 129641143 129641178 -22896081 + URR1B DNA MER1_type 5 39 -186 3 1574 366 23 0 0 chr5 129641178 129641221 -22896038 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1574 779 183 228 0 chr5 129641221 129641365 -22895894 + URR1B DNA MER1_type 40 224 -1 3 1574 211 154 92 20 chr5 129641567 129641719 -22895540 + (CTATG)n Simple_repeat Simple_repeat 1 163 0 3 1574 809 217 3 0 chr5 129641955 129642256 -22895003 + (TCCA)n Simple_repeat Simple_repeat 1 301 0 3 1574 478 295 189 8 chr5 129642365 129642608 -22894651 + B4A SINE B4 3 289 -3 3 1574 351 362 83 26 chr5 129643579 129643809 -22893450 + B4A SINE B4 40 282 -10 3 1574 249 33 0 0 chr5 129645797 129645827 -22891432 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1574 251 333 0 0 chr5 129646396 129646459 -22890800 + (TG)n Simple_repeat Simple_repeat 2 64 0 3 1574 1101 65 0 0 chr5 129647294 129647432 -22889827 - B1_Mus1 SINE Alu -9 139 2 3 1574 240 316 31 0 chr5 129647626 129647724 -22889535 + MIR SINE MIR 29 126 -142 3 1574 242 213 0 0 chr5 129648658 129648705 -22888554 + MIRc SINE MIR 104 150 -118 3 1574 239 291 173 25 chr5 129648994 129649156 -22888103 - MLT1K LTR MaLR -35 560 375 3 1574 572 256 111 37 chr5 129650588 129650850 -22886409 - RMER20B LTR ERVK -91 425 139 3 1574 366 42 0 0 chr5 129651897 129651945 -22885314 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 1574 584 312 25 0 chr5 129652405 129652562 -22884697 + RSINE1 SINE B4 2 162 -3 3 1574 469 257 6 6 chr5 129652571 129652751 -22884508 + (CA)n Simple_repeat Simple_repeat 1 180 0 3 1574 405 86 0 0 chr5 129653240 129653298 -22883961 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1574 1021 224 172 16 chr5 129653636 129653944 -22883315 - MTD LTR MaLR -14 405 50 3 1574 269 325 109 16 chr5 129654636 129654764 -22882495 - MER20 DNA MER1_type -75 144 5 3 1574 214 73 0 68 chr5 129654991 129655035 -22882224 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 3 1574 648 262 48 0 chr5 129655035 129655180 -22882079 - RSINE1 SINE B4 -12 153 2 3 1574 1483 42 0 25 chr5 129655301 129655497 -22881762 - B2_Mm2 SINE B2 -3 192 2 3 1574 628 203 10 32 chr5 129655539 129655695 -22881564 + RMER1B Other Other 856 1063 -3 3 1574 314 347 132 53 chr5 129656344 129656700 -22880559 - L1M5 LINE L1 -456 5706 5323 3 1574 375 341 83 13 chr5 129656754 129657054 -22880205 - L1M5 LINE L1 -902 5244 4924 3 1574 433 318 142 34 chr5 129657654 129657950 -22879309 - MLT1D LTR MaLR -6 499 172 4 1574 405 0 0 0 chr5 129658156 129658201 -22879058 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1574 587 256 87 16 chr5 129660212 129660395 -22876864 + B3A SINE B2 3 198 0 4 1574 1608 26 0 0 chr5 129660703 129660896 -22876363 + B2_Mm1a SINE B2 1 193 0 4 1574 664 224 0 47 chr5 129662334 129662484 -22874775 - RSINE1 SINE B4 -21 144 2 4 1574 720 198 35 12 chr5 129663065 129663234 -22874025 - RLTR11A LTR ERVK -349 179 7 4 1574 1153 48 10 33 chr5 129663467 129663772 -22873487 + (TG)n Simple_repeat Simple_repeat 1 297 0 4 1574 386 322 0 72 chr5 129663851 129664045 -22873214 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 4 1574 567 132 0 0 chr5 129664949 129665040 -22872219 + (TCC)n Simple_repeat Simple_repeat 3 93 0 4 1574 232 318 94 38 chr5 129666037 129666197 -22871062 - LTR84a LTR ERVL -427 330 162 4 1574 261 0 0 0 chr5 129666604 129666633 -22870626 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1574 735 246 41 36 chr5 129667614 129667808 -22869451 + B3A SINE B2 1 195 -3 4 1574 1120 73 0 0 chr5 129667849 129667986 -22869273 + B1_Mus2 SINE Alu 1 137 -10 4 1574 279 0 0 0 chr5 129667986 129668017 -22869242 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1574 442 318 109 54 chr5 129668050 129668326 -22868933 - B4 SINE B4 -1 291 1 4 1574 189 100 39 20 chr5 129668336 129668387 -22868872 + (CTGGGG)n Simple_repeat Simple_repeat 6 57 0 4 1574 448 281 148 0 chr5 129668919 129669054 -22868205 + RSINE1 SINE B4 2 156 -9 4 1574 381 342 47 47 chr5 129669176 129669409 -22867850 + L1MEe LINE L1 628 860 -3994 4 1574 1201 230 25 25 chr5 129670364 129670649 -22866610 + B4 SINE B4 8 292 0 4 1574 603 224 0 0 chr5 129670650 129670829 -22866430 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1574 436 192 266 47 chr5 129670884 129670903 -22866356 + L1M2 LINE L1 5476 5494 -806 4 1574 1440 231 114 31 chr5 129670903 129671288 -22865971 - MTD LTR MaLR -2 417 1 4 1574 436 192 266 47 chr5 129671288 129671437 -22865822 + L1M2 LINE L1 5495 5681 -619 4 1574 728 179 0 21 chr5 129671683 129671826 -22865433 - RSINE1 SINE B4 -24 141 2 4 1574 378 353 119 14 chr5 129671827 129672120 -22865139 - L1MEf LINE L1 -3257 2889 2566 4 1574 550 319 144 28 chr5 129672127 129672411 -22864848 + MER2 DNA MER2_type 6 322 -23 4 1574 405 222 40 0 chr5 129672449 129672548 -22864711 + B1F SINE Alu 47 149 0 4 1574 276 237 0 0 chr5 129672564 129672623 -22864636 + tRNA-Ala-GCY_ tRNA tRNA 1 59 -16 4 1574 462 101 0 0 chr5 129672831 129672900 -22864359 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 1574 386 272 146 42 chr5 129672906 129673071 -22864188 - B3A SINE B2 -16 182 1 4 1574 221 57 0 28 chr5 129673274 129673310 -22863949 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 4 1574 634 145 34 14 chr5 129673794 129673941 -22863318 + CT-rich Low_complexity Low_complexity 4 153 0 4 1574 254 33 0 0 chr5 129673941 129673971 -22863288 + (TC)n Simple_repeat Simple_repeat 2 31 0 4 1574 628 131 9 0 chr5 129673972 129674079 -22863180 - B1_Mur4 SINE Alu 0 150 43 4 1574 231 174 0 0 chr5 129674087 129674133 -22863126 - L1MEf LINE L1 -4710 1532 1487 4 1574 403 331 0 58 chr5 129674187 129674341 -22862918 - RSINE1 SINE B4 -4 161 17 4 1574 419 211 26 0 chr5 129674460 129674536 -22862723 - ID4_ SINE ID -3 80 3 4 1574 503 206 0 11 chr5 129674544 129674637 -22862622 - B1F SINE Alu -57 92 1 4 1574 245 352 0 77 chr5 129674637 129674668 -22862591 - MT2B2 LTR ERVL -430 154 133 4 1574 1168 82 0 0 chr5 129674684 129674831 -22862428 - B1_Mm SINE Alu 0 147 1 4 1574 833 199 9 84 chr5 129676480 129676694 -22860565 + B3A SINE B2 1 198 0 4 1574 183 114 0 0 chr5 129676723 129676758 -22860501 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1574 702 0 0 0 chr5 129676825 129676903 -22860356 + (TTCTC)n Simple_repeat Simple_repeat 5 82 0 4 1574 809 290 17 30 chr5 129679395 129679690 -22857569 + B4A SINE B4 2 292 0 4 1574 22 35 0 0 chr5 129679720 129679749 -22857510 + AT_rich Low_complexity Low_complexity 1 29 0 4 1574 270 0 0 0 chr5 129680120 129680150 -22857109 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1574 316 276 26 13 chr5 129680957 129681034 -22856225 + B4A SINE B4 9 86 -206 4 1574 279 368 44 0 chr5 129681046 129681160 -22856099 + B4A SINE B4 139 257 -35 4 1574 477 0 0 0 chr5 129681894 129681947 -22855312 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1574 180 265 41 0 chr5 129685274 129685323 -22851936 - L4 LINE RTE -1774 255 205 4 1574 320 305 5 53 chr5 129685665 129685852 -22851407 + (GGGTG)n Simple_repeat Simple_repeat 3 180 0 4 1574 1089 319 106 31 chr5 129686039 129686719 -22850540 - L1M4b LINE L1 -4056 3278 2548 4 1574 295 316 0 0 chr5 129686734 129686848 -22850411 + (TG)n Simple_repeat Simple_repeat 1 114 0 4 1574 288 227 19 78 chr5 129687383 129687493 -22849766 - L1M4b LINE L1 -5247 1761 1615 4 1574 486 0 0 0 chr5 129687494 129687548 -22849711 + (GA)n Simple_repeat Simple_repeat 1 54 0 4 1574 264 315 9 0 chr5 129688128 129688236 -22849023 - L1M4b LINE L1 -7124 210 102 4 1574 347 186 10 0 chr5 129689021 129689123 -22848136 + (TG)n Simple_repeat Simple_repeat 1 103 0 4 1574 180 0 0 0 chr5 129689259 129689279 -22847980 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1574 2267 147 68 8 chr5 129690108 129690289 -22846970 - MTC LTR MaLR 0 421 243 4 1574 414 0 0 0 chr5 129690289 129690335 -22846924 + (CTG)n Simple_repeat Simple_repeat 2 47 0 4 1574 2267 147 68 8 chr5 129690335 129690550 -22846709 - MTC LTR MaLR -179 242 3 4 1574 793 156 49 21 chr5 129691952 129692081 -22845178 + B1_Mur3 SINE Alu 1 136 -13 4 1574 261 0 0 0 chr5 129692081 129692110 -22845149 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1574 793 156 49 21 chr5 129692110 129692124 -22845135 + B1_Mur3 SINE Alu 137 147 -2 4 1574 885 107 0 0 chr5 129692124 129692255 -22845004 + (GGA)n Simple_repeat Simple_repeat 3 133 0 4 1574 1376 138 8 63 chr5 129692408 129692647 -22844612 - URR1A DNA MER1_type 0 226 1 4 1574 277 295 121 14 chr5 129693107 129693248 -22844011 - MLT1K LTR MaLR -23 572 417 4 1574 260 286 95 89 chr5 129693385 129693554 -22843705 - MLT1K LTR MaLR -377 233 64 4 1574 828 39 0 0 chr5 129693869 129693973 -22843286 + (TG)n Simple_repeat Simple_repeat 1 104 0 4 1574 423 0 0 0 chr5 129693973 129694019 -22843240 + (GA)n Simple_repeat Simple_repeat 1 47 0 4 1574 510 131 12 0 chr5 129694497 129694581 -22842678 + B1_Mus2 SINE Alu 63 147 0 4 1574 272 94 19 0 chr5 129694594 129694647 -22842612 + (CAAAAA)n Simple_repeat Simple_repeat 2 55 0 4 1574 227 297 139 98 chr5 129694726 129694765 -22842494 - B3 SINE B2 -4 212 11 4 1574 678 250 13 19 chr5 129694765 129694920 -22842339 - RSINE1 SINE B4 0 165 12 4 1574 803 178 70 112 chr5 129697603 129697818 -22839441 + URR1B DNA MER1_type 15 220 -5 4 1574 374 291 108 16 chr5 129697884 129698013 -22839246 + MER58A DNA MER1_type 70 210 -14 4 1574 390 42 0 0 chr5 129698014 129698062 -22839197 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1574 369 62 0 0 chr5 129698487 129698535 -22838724 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 4 1574 387 264 104 0 chr5 129698536 129698642 -22838617 - B3A SINE B2 -38 160 44 4 1574 773 160 72 0 chr5 129698657 129698782 -22838477 - B1_Mus2 SINE Alu -13 134 1 4 1574 280 330 58 0 chr5 129699033 129699136 -22838123 - MLT1B LTR MaLR -9 381 273 4 1574 21 0 0 0 chr5 129699269 129699290 -22837969 + AT_rich Low_complexity Low_complexity 1 21 0 4 1574 862 273 109 57 chr5 129699631 129700054 -22837205 - RMER13A LTR ERVK -394 466 22 4 1574 1178 75 0 0 chr5 129700416 129700563 -22836696 + B1_Mm SINE Alu 1 147 0 4 1574 189 102 0 106 chr5 129700808 129700874 -22836385 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 4 1574 404 332 108 80 chr5 129703050 129703364 -22833895 - MER76 LTR ERVL -62 629 307 4 1574 296 233 7 0 chr5 129703863 129704009 -22833250 + (CTGGGG)n Simple_repeat Simple_repeat 2 148 0 4 1574 684 0 0 0 chr5 129705431 129705507 -22831752 + (TTC)n Simple_repeat Simple_repeat 2 77 0 4 1574 1375 84 0 11 chr5 129705507 129705687 -22831572 - B2_Mm2 SINE B2 -17 178 1 4 1574 890 120 277 11 chr5 129707741 129707918 -22829341 - URR1A DNA MER1_type -2 224 1 4 1574 254 270 38 0 chr5 129709727 129709816 -22827443 - ID4_ SINE ID -60 92 1 4 1574 378 332 132 15 chr5 129710902 129711107 -22826152 - MER44D DNA MER2_type -130 575 347 4 1574 397 340 89 30 chr5 129711330 129711577 -22825682 - MER44D DNA MER2_type -450 255 3 4 1574 399 157 0 0 chr5 129711605 129711675 -22825584 + CT-rich Low_complexity Low_complexity 2 71 0 4 1574 328 286 67 24 chr5 129711712 129711877 -22825382 - L1MCa LINE L1 -4687 1821 1650 4 1574 217 197 16 16 chr5 129712101 129712163 -22825096 + (TATG)n Simple_repeat Simple_repeat 1 62 0 4 1574 21 36 0 0 chr5 129712245 129712273 -22824986 + AT_rich Low_complexity Low_complexity 1 28 0 4 1574 929 220 25 10 chr5 129712274 129712476 -22824783 - B3 SINE B2 -11 205 1 4 1574 690 249 86 113 chr5 129712545 129712871 -22824388 + RMER13A LTR ERVK 511 827 -33 4 1574 2090 196 55 39 chr5 129713073 129713530 -22823729 - RMER4A LTR ERVK 0 466 3 4 1574 392 281 99 14 chr5 129713702 129713843 -22823416 + RSINE1 SINE B4 9 161 -4 4 1574 333 0 0 0 chr5 129714263 129714300 -22822959 + (TC)n Simple_repeat Simple_repeat 1 37 0 4 1574 838 121 0 15 chr5 129715755 129716355 -22820904 + (GGGA)n Simple_repeat Simple_repeat 1 590 0 4 1574 434 237 0 20 chr5 129716359 129716623 -22820636 + GA-rich Low_complexity Low_complexity 1 258 0 4 1574 207 228 0 0 chr5 129716737 129716860 -22820399 + (CAGG)n Simple_repeat Simple_repeat 3 125 0 4 1574 205 360 137 22 chr5 129717018 129717245 -22820014 + L2b LINE L2 3113 3365 -10 4 1574 387 0 0 0 chr5 129718018 129718061 -22819198 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1574 468 0 0 0 chr5 129718884 129718936 -22818323 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1574 213 278 131 20 chr5 129719716 129719815 -22817444 - MIRb SINE MIR -112 156 47 4 1574 1019 198 93 32 chr5 129721350 129721596 -22815663 - MTD LTR MaLR -14 405 145 5 1574 696 277 37 5 chr5 129721703 129721892 -22815367 - MTD LTR MaLR -224 195 1 5 1574 240 284 91 9 chr5 129722998 129723108 -22814151 + MLT1E2 LTR MaLR 1 119 -386 5 1574 272 333 119 22 chr5 129723205 129723432 -22813827 + MLT1E2 LTR MaLR 275 523 -104 5 1574 198 118 0 0 chr5 129724141 129724175 -22813084 + (C)n Simple_repeat Simple_repeat 1 34 0 5 1574 430 308 104 41 chr5 129724907 129725194 -22812065 + L1M4 LINE L1 2827 3149 -2994 5 1574 216 0 0 0 chr5 129725194 129725218 -22812041 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1574 339 369 92 17 chr5 129725218 129725245 -22812014 + L1M4 LINE L1 3150 3177 -2966 5 1574 237 33 0 0 chr5 129725251 129725281 -22811978 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1574 590 288 71 0 chr5 129725318 129725488 -22811771 + B3A SINE B2 1 182 -16 5 1574 942 136 7 7 chr5 129725509 129725657 -22811602 - B1_Mus1 SINE Alu 0 148 1 5 1574 323 127 16 0 chr5 129725689 129725752 -22811507 + (TCCC)n Simple_repeat Simple_repeat 2 65 0 5 1574 298 298 38 43 chr5 129725752 129725938 -22811321 + L1M4 LINE L1 4277 4461 -1679 5 1574 2397 82 12 59 chr5 129727200 129727537 -22809722 + ORR1A2 LTR MaLR 3 323 -4 5 1574 276 235 0 0 chr5 129731072 129731140 -22806119 + (CAT)n Simple_repeat Simple_repeat 3 70 0 5 1574 431 271 59 50 chr5 129732425 129732627 -22804632 + HAL1-2a_MD LINE L1 2344 2547 -477 5 1574 1413 99 124 0 chr5 129733123 129733324 -22803935 + URR1A DNA MER1_type 1 226 0 5 1574 261 214 172 35 chr5 129734020 129734107 -22803152 + B3A SINE B2 18 116 -82 5 1574 246 251 114 49 chr5 129734107 129734371 -22802888 + L1M3e LINE L1 1443 1723 -5307 5 1574 970 240 78 109 chr5 129734481 129734699 -22802560 - RLTR18B LTR ERVK 0 616 275 5 1574 3367 43 5 2 chr5 129734699 129735095 -22802164 - MTB LTR MaLR 0 400 4 5 1574 970 231 66 126 chr5 129735095 129735289 -22801970 - RLTR18B LTR ERVK -238 274 105 5 1574 778 306 55 4 chr5 129735352 129735608 -22801651 + B4 SINE B4 24 292 0 5 1574 189 0 0 0 chr5 129735611 129735632 -22801627 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 5 1574 306 0 0 0 chr5 129735745 129735779 -22801480 + (CA)n Simple_repeat Simple_repeat 1 34 0 5 1574 573 241 158 57 chr5 129739881 129739993 -22797266 + RMER21A LTR ERV1 414 536 -411 5 1574 204 40 0 0 chr5 129739993 129740018 -22797241 + (CCCCG)n Simple_repeat Simple_repeat 5 29 0 5 1574 573 241 158 57 chr5 129740018 129740151 -22797108 + RMER21A LTR ERV1 537 684 -263 5 1574 4392 98 11 28 chr5 129740951 129741590 -22795669 + RLTR5_Mm LTR ERV1 1 628 0 5 1574 258 200 140 79 chr5 129741638 129741752 -22795507 + MLT1J1 LTR MaLR 32 152 -292 5 1574 1279 144 46 5 chr5 129743156 129743372 -22793887 - URR1B DNA MER1_type 0 225 1 5 1574 442 299 50 58 chr5 129744468 129744727 -22792532 + ORR1E LTR MaLR 41 297 -62 5 1574 423 56 0 0 chr5 129745934 129745988 -22791271 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 5 1574 315 160 0 0 chr5 129746923 129746998 -22790261 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 5 1574 3596 20 0 2 chr5 129747219 129747616 -22789643 - MTA_Mm LTR MaLR 0 396 1 5 1574 298 295 95 0 chr5 129747672 129747777 -22789482 + MIR3 SINE MIR 78 192 -16 5 1574 895 271 24 51 chr5 129748619 129748915 -22788344 + B4 SINE B4 5 292 0 5 1574 243 0 0 0 chr5 129748928 129748955 -22788304 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1574 204 333 0 0 chr5 129750238 129750304 -22786955 + GA-rich Low_complexity Low_complexity 3 68 0 5 1574 225 0 0 0 chr5 129750887 129750912 -22786347 + (CA)n Simple_repeat Simple_repeat 2 26 0 5 1574 226 287 64 24 chr5 129751091 129751216 -22786043 + MIRb SINE MIR 58 187 -81 5 1574 232 379 54 29 chr5 129751481 129751666 -22785593 - MIRb SINE MIR -78 190 1 5 1574 280 311 19 19 chr5 129752099 129752207 -22785052 - L1MA5 LINE L1 -551 5740 5633 5 1574 580 288 28 10 chr5 129752203 129752418 -22784841 + L1MA5 LINE L1 5714 5939 -361 5 1574 207 86 50 33 chr5 129752420 129752480 -22784779 + T-rich Low_complexity Low_complexity 3 63 0 5 1574 1089 104 0 0 chr5 129752481 129752625 -22784634 - B1_Mus1 SINE Alu 0 148 5 5 1574 1061 58 65 0 chr5 129752665 129752804 -22784455 - B1_Mus1 SINE Alu 0 148 1 5 1574 225 0 0 0 chr5 129752829 129752854 -22784405 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1574 442 200 0 34 chr5 129752855 129752974 -22784285 + (TATG)n Simple_repeat Simple_repeat 4 118 0 5 1574 293 259 203 7 chr5 129753707 129753855 -22783404 - L1MCc LINE L1 -6223 200 24 5 1574 917 294 29 29 chr5 129754272 129754545 -22782714 + B4A SINE B4 6 278 -14 5 1574 268 226 24 35 chr5 129755055 129755152 -22782107 - MLT1J LTR MaLR -346 166 45 5 1574 303 315 11 0 chr5 129755738 129755827 -22781432 - MLT1J2 LTR MaLR -285 163 74 5 1574 258 277 110 63 chr5 129755826 129755953 -22781306 - MLT1J LTR MaLR -367 145 13 5 1574 201 147 0 0 chr5 129757367 129757401 -22779858 + (CCCCCT)n Simple_repeat Simple_repeat 1 34 0 5 1574 198 0 0 0 chr5 129759106 129759128 -22778131 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 5 1574 261 401 0 0 chr5 129759636 129759808 -22777451 + (TGG)n Simple_repeat Simple_repeat 1 172 0 5 1574 222 380 12 0 chr5 129760488 129760659 -22776600 + (ATGGTG)n Simple_repeat Simple_repeat 2 174 0 5 1574 261 368 0 0 chr5 129760685 129760821 -22776438 + (TGG)n Simple_repeat Simple_repeat 1 136 0 5 1574 353 193 0 120 chr5 129760965 129761065 -22776194 + MT2B LTR ERVL 153 240 -361 5 1574 686 135 101 23 chr5 129760990 129761119 -22776140 + B1_Mus1 SINE Alu 10 148 0 5 1574 304 40 40 0 chr5 129761120 129761170 -22776089 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 5 196 577 292 146 48 chr5 129761211 129761527 -22775732 + RMER10A LTR ERVL 71 417 -25 5 1575 233 258 0 11 chr5 129762766 129762860 -22774399 + (CACCAT)n Simple_repeat Simple_repeat 1 93 0 5 1575 1092 195 73 159 chr5 129763065 129763473 -22773786 - ORR1C2 LTR MaLR -11 373 1 5 1575 187 356 27 0 chr5 129764899 129764972 -22772287 - MIR3 SINE MIR -53 155 81 5 1575 1068 124 199 5 chr5 129768716 129768902 -22768357 + URR1A DNA MER1_type 5 226 0 5 1575 189 0 0 0 chr5 129769808 129769829 -22767430 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 5 1575 207 0 0 0 chr5 129770778 129770801 -22766458 + (GGATG)n Simple_repeat Simple_repeat 3 25 0 5 1575 688 197 187 31 chr5 129771586 129771811 -22765448 - RMER4B LTR ERVK -8 577 318 5 1575 579 188 0 0 chr5 129771866 129771983 -22765276 + CT-rich Low_complexity Low_complexity 3 119 0 5 1575 772 192 156 23 chr5 129772032 129772250 -22765009 - RMER4B LTR ERVK -338 247 1 5 1575 482 204 9 0 chr5 129773028 129773141 -22764118 + GA-rich Low_complexity Low_complexity 1 114 0 5 1575 290 336 72 40 chr5 129773472 129773624 -22763635 + MLT1A1 LTR MaLR 1 157 -251 5 1575 455 292 76 8 chr5 129773829 129773960 -22763299 - B1F2 SINE Alu 0 149 10 5 1575 921 301 50 29 chr5 129776875 129777250 -22760009 - MTE2a LTR MaLR -2 417 19 5 1575 264 300 87 69 chr5 129778389 129778726 -22758533 - L2a LINE L2 -315 3111 2789 5 1575 217 100 0 39 chr5 129778978 129779030 -22758229 + (GGGA)n Simple_repeat Simple_repeat 3 52 0 5 1575 547 137 0 44 chr5 129779057 129779240 -22758019 + GA-rich Low_complexity Low_complexity 2 176 0 5 1575 445 113 70 23 chr5 129779242 129779414 -22757845 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 5 1575 496 114 0 64 chr5 129779447 129779634 -22757625 + GA-rich Low_complexity Low_complexity 2 176 0 5 1575 286 183 65 0 chr5 129779644 129779737 -22757522 + (TGGA)n Simple_repeat Simple_repeat 1 99 0 5 1575 921 304 154 3 chr5 129780338 129780875 -22756384 - L1MA6 LINE L1 -474 6062 5413 5 1575 1778 151 3 27 chr5 129781111 129781411 -22755848 + ORR1D1 LTR MaLR 1 293 -81 5 1575 833 189 161 10 chr5 129781418 129781610 -22755649 + URR1A DNA MER1_type 6 226 0 5 1575 402 211 22 11 chr5 129781610 129781701 -22755558 + ORR1D1 LTR MaLR 282 373 -1 5 1575 568 316 168 31 chr5 129781776 129782358 -22754901 - L1MA6 LINE L1 -1312 5064 4403 5 1575 486 296 19 19 chr5 129782700 129782862 -22754397 - L1MA6 LINE L1 -3745 2631 2470 5 1575 838 267 76 30 chr5 129782913 129783176 -22754083 + B4 SINE B4 8 282 -10 5 1575 342 0 0 0 chr5 129783181 129783219 -22754040 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1575 243 0 0 0 chr5 129783219 129783245 -22754014 + (TC)n Simple_repeat Simple_repeat 1 27 0 5 1575 27 29 0 0 chr5 129783266 129783300 -22753959 + AT_rich Low_complexity Low_complexity 1 34 0 5 1575 902 150 57 0 chr5 129783302 129783442 -22753817 + B1_Mus1 SINE Alu 1 148 0 5 1575 306 374 142 27 chr5 129783466 129783796 -22753463 - L1MA6 LINE L1 -3903 2481 2114 5 1575 848 182 2 6 chr5 129784335 129784857 -22752402 + (TTCA)n Simple_repeat Simple_repeat 1 519 0 5 1575 231 349 19 29 chr5 129785028 129785167 -22752092 - MIR SINE MIR -113 163 21 5 1575 1282 137 103 16 chr5 129785853 129786106 -22751153 - MTB_Mm LTR MaLR -132 275 1 5 1575 1156 55 7 40 chr5 129786202 129786354 -22750905 + B1_Mus1 SINE Alu 2 148 0 5 1575 207 0 0 0 chr5 129786574 129786597 -22750662 + (CACAG)n Simple_repeat Simple_repeat 4 26 0 5 1575 465 284 66 38 chr5 129788447 129788630 -22748629 - MER34A LTR ERV1 0 571 384 5 1575 505 203 134 8 chr5 129788830 129788949 -22748310 - MTE2b LTR MaLR -241 138 5 5 1575 585 256 34 34 chr5 129789226 129789404 -22747855 + HAL1-2a_MD LINE L1 2347 2524 -500 5 1575 366 72 0 78 chr5 129789606 129789696 -22747563 + (CGGGG)n Simple_repeat Simple_repeat 5 87 0 5 1575 753 106 0 0 chr5 129790543 129790656 -22746603 + (TTC)n Simple_repeat Simple_repeat 3 115 0 5 1575 309 269 15 0 chr5 129790657 129790724 -22746535 - ID_B1 SINE B4 -7 217 150 5 1575 1650 163 86 47 chr5 129790724 129790767 -22746492 + RLTR20D LTR ERVK 1 39 -529 5 1575 7592 33 0 0 chr5 129790767 129791639 -22745620 + L1Md_T LINE L1 5711 6582 0 5 1575 1650 163 85 45 chr5 129791639 129791993 -22745266 + RLTR20D LTR ERVK 40 464 -104 5 1575 378 0 0 0 chr5 129791993 129792035 -22745224 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1575 939 163 80 24 chr5 129792035 129792126 -22745133 + RLTR20D LTR ERVK 465 567 -1 5 1575 684 250 6 13 chr5 129792126 129792281 -22744978 - ID_B1 SINE B4 -69 155 2 5 1575 318 98 0 0 chr5 129793196 129793247 -22744012 + (TTTTC)n Simple_repeat Simple_repeat 1 51 0 5 1575 960 89 210 25 chr5 129793248 129793410 -22743849 - B2_Mm2 SINE B2 -2 193 2 5 1575 244 283 130 23 chr5 129793626 129793803 -22743456 + RMER15 LTR ERVL 6 201 -374 5 1575 182 213 0 60 chr5 129794920 129794970 -22742289 + L3 LINE CR1 2208 2254 -2235 5 1575 676 225 106 0 chr5 129796236 129796387 -22740872 + RMER1B Other Other 435 601 -465 6 1575 5032 123 22 22 chr5 129796453 129796483 -22740776 - RMER19A LTR ERVK 0 737 721 6 1575 1579 28 22 0 chr5 129796483 129796663 -22740596 - B2_Mm1a SINE B2 -8 185 2 6 1575 5032 123 22 22 chr5 129796663 129797369 -22739890 - RMER19A LTR ERVK -17 720 1 6 1575 767 233 16 11 chr5 129797732 129797914 -22739345 - MTC LTR MaLR -223 198 16 6 1575 315 0 0 0 chr5 129797920 129797955 -22739304 + (TG)n Simple_repeat Simple_repeat 1 35 0 6 1575 509 311 73 8 chr5 129798672 129799023 -22738236 + L1MD LINE L1 4966 5348 -798 6 1575 823 188 0 27 chr5 129799165 129799313 -22737946 + B1_Mur3 SINE Alu 3 146 -3 6 1575 356 0 0 22 chr5 129801343 129801388 -22735871 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1575 1060 185 9 94 chr5 129801618 129801851 -22735408 + B3 SINE B2 4 216 0 6 1575 3733 179 192 8 chr5 129802239 129803103 -22734156 + RMER1B Other Other 44 1066 0 6 1575 1176 95 0 0 chr5 129803120 129803268 -22733991 + B1_Mus1 SINE Alu 1 148 0 6 1575 574 150 210 159 chr5 129803381 129803595 -22733664 - URR1A DNA MER1_type -1 225 1 6 1575 217 247 111 58 chr5 129804307 129804479 -22732780 - MIR SINE MIR -43 219 39 6 1575 187 103 0 49 chr5 129804747 129804788 -22732471 + GA-rich Low_complexity Low_complexity 3 41 0 6 1575 724 72 16 23 chr5 129805767 129805895 -22731364 + (AGGGGG)n Simple_repeat Simple_repeat 1 127 0 6 1575 204 279 138 35 chr5 129806009 129806154 -22731105 - MIRb SINE MIR -108 160 1 6 1575 242 262 44 61 chr5 129806468 129806582 -22730677 + L1M4 LINE L1 3350 3461 -2685 6 1575 234 375 92 33 chr5 129806708 129806981 -22730278 + L1M4 LINE L1 5569 5857 -317 6 1575 230 0 33 0 chr5 129807156 129807186 -22730073 + (CA)n Simple_repeat Simple_repeat 1 31 0 6 1575 1403 86 11 5 chr5 129807248 129807435 -22729824 - B2_Mm2 SINE B2 -7 188 1 6 1575 859 260 39 123 chr5 129807454 129807867 -22729392 + MTD LTR MaLR 3 380 -39 6 1575 970 156 42 53 chr5 129807868 129808058 -22729201 - B2_Mm2 SINE B2 -7 188 1 6 1575 887 57 16 0 chr5 129808068 129808190 -22729069 - B2_Mm2 SINE B2 -42 153 30 6 1575 222 37 0 0 chr5 129808209 129808236 -22729023 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1575 583 333 63 11 chr5 129808895 129809180 -22728079 - MLT1A0 LTR MaLR -8 357 58 6 1575 257 151 19 0 chr5 129810043 129810096 -22727163 + CT-rich Low_complexity Low_complexity 1 54 0 6 1575 1733 255 46 70 chr5 129810474 129811034 -22726225 + Lx8 LINE L1 6601 7147 -326 6 1575 585 42 0 0 chr5 129811237 129811309 -22725950 + (GAAA)n Simple_repeat Simple_repeat 3 74 0 6 1575 287 191 0 14 chr5 129811309 129811378 -22725881 + GA-rich Low_complexity Low_complexity 2 69 0 6 1575 297 75 0 0 chr5 129811723 129811763 -22725496 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1575 309 262 2 8 chr5 129812342 129812424 -22724835 + B4 SINE B4 1 79 -213 6 1575 429 193 22 11 chr5 129812472 129812561 -22724698 + B4 SINE B4 94 183 -109 6 1575 570 248 68 31 chr5 129812558 129812720 -22724539 + B3A SINE B2 14 181 -17 6 1575 234 0 0 0 chr5 129812732 129812758 -22724501 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 6 1575 274 178 0 52 chr5 129812790 129812867 -22724392 + GA-rich Low_complexity Low_complexity 1 73 0 6 1575 192 77 0 0 chr5 129812973 129812999 -22724260 + (CA)n Simple_repeat Simple_repeat 2 27 0 6 1575 354 45 0 0 chr5 129814858 129814902 -22722357 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1575 1468 198 35 41 chr5 129817119 129817462 -22719797 - L1M4c LINE L1 -4014 2370 2030 6 1575 546 16 0 0 chr5 129817529 129817592 -22719667 + (GA)n Simple_repeat Simple_repeat 1 63 0 6 1575 183 231 22 22 chr5 129818138 129818275 -22718984 + (TG)n Simple_repeat Simple_repeat 2 138 0 6 1575 246 330 0 22 chr5 129818405 129818495 -22718764 - L1M5 LINE L1 -1462 4684 4597 6 1575 488 314 102 9 chr5 129818633 129818858 -22718401 - MER2 DNA MER2_type -64 281 36 6 1575 1578 201 94 6 chr5 129819163 129819493 -22717766 + MTEa LTR MaLR 13 371 -8 6 1575 1081 243 87 4 chr5 129819849 129820113 -22717146 - B4 SINE B4 -5 287 2 6 1575 470 250 0 9 chr5 129820795 129820900 -22716359 + PB1D10 SINE Alu 14 117 0 6 1575 511 223 31 0 chr5 129821347 129821477 -22715782 + ORR1E LTR MaLR 12 145 -214 6 1575 430 201 0 42 chr5 129821553 129821913 -22715346 + (CCCTG)n Simple_repeat Simple_repeat 1 344 0 6 1575 641 239 43 37 chr5 129822346 129822507 -22714752 + B3A SINE B2 1 162 -36 6 1575 3064 23 23 0 chr5 129823438 129823784 -22713475 - IAPEY2_LTR LTR ERVK -3 354 1 6 1575 758 11 11 0 chr5 129823982 129824073 -22713186 + (TTC)n Simple_repeat Simple_repeat 2 93 0 6 1575 204 179 0 0 chr5 129826024 129826063 -22711196 + (CGTG)n Simple_repeat Simple_repeat 2 40 0 6 1575 925 92 0 14 chr5 129828075 129828219 -22709040 + (GGA)n Simple_repeat Simple_repeat 2 143 0 6 1575 252 0 0 0 chr5 129828564 129828592 -22708667 + (TC)n Simple_repeat Simple_repeat 2 29 0 6 1575 512 218 135 0 chr5 129828594 129828727 -22708532 - ID_B1 SINE B4 -22 202 52 6 1575 2334 140 16 5 chr5 129829900 129830281 -22706978 - Lx4B LINE L1 -302 6756 6372 6 1575 1819 137 43 49 chr5 129830293 129830639 -22706620 + Lx4B LINE L1 6715 7058 0 6 1575 371 154 26 0 chr5 129830639 129830717 -22706542 + GA-rich Low_complexity Low_complexity 1 80 0 6 1575 894 39 0 91 chr5 129830709 129830906 -22706353 + (GGAAA)n Simple_repeat Simple_repeat 2 180 0 6 1575 897 98 11 44 chr5 129830878 129831060 -22706199 + GA-rich Low_complexity Low_complexity 3 178 0 6 1575 927 109 0 0 chr5 129831093 129831231 -22706028 + (GGAAA)n Simple_repeat Simple_repeat 4 141 0 6 1575 275 217 143 109 chr5 129831881 129832000 -22705259 + B1F SINE Alu 3 125 -24 6 1575 453 36 0 0 chr5 129832000 129832055 -22705204 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 6 1575 206 176 20 0 chr5 129834279 129834330 -22702929 + (ATGGTG)n Simple_repeat Simple_repeat 6 57 0 6 1575 856 196 170 55 chr5 129834676 129835006 -22702253 - RLTR9A LTR ERVK 0 368 1 6 1575 725 199 6 0 chr5 129835204 129835380 -22701879 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 6 1575 937 197 18 9 chr5 129835399 129835962 -22701297 + (TCCA)n Simple_repeat Simple_repeat 1 568 0 6 1575 331 266 0 103 chr5 129836717 129836843 -22700416 - BC1_Mm scRNA scRNA -39 113 1 6 1575 334 247 163 20 chr5 129837031 129837184 -22700075 - MER5B DNA MER1_type -3 175 1 6 1575 1906 243 87 18 chr5 129837373 129837413 -22699846 - MT2A LTR ERVL -4 529 490 6 1575 681 79 0 0 chr5 129837413 129837514 -22699745 + (TG)n Simple_repeat Simple_repeat 1 101 0 6 1575 1906 243 87 18 chr5 129837514 129837968 -22699291 - MT2A LTR ERVL -44 489 1 6 1575 472 221 157 14 chr5 129838009 129838156 -22699103 - B3 SINE B2 -2 214 47 6 1575 577 357 87 36 chr5 129838419 129838808 -22698451 + MER70B LTR ERVL 164 572 -6 6 1575 860 249 174 49 chr5 129838919 129839286 -22697973 - MTD LTR MaLR -1 418 6 6 1575 324 0 0 0 chr5 129840300 129840336 -22696923 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1575 346 306 23 17 chr5 129840471 129840647 -22696612 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 6 1575 184 211 28 0 chr5 129840676 129840747 -22696512 + (TCCA)n Simple_repeat Simple_repeat 2 74 0 6 1575 487 294 11 33 chr5 129840863 129841091 -22696168 + (TCCA)n Simple_repeat Simple_repeat 1 223 0 6 1575 297 297 16 49 chr5 129841135 129841319 -22695940 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 6 1575 378 302 0 0 chr5 129841594 129841921 -22695338 + (TGGG)n Simple_repeat Simple_repeat 1 327 0 6 1575 991 287 63 15 chr5 129842413 129842746 -22694513 + MTE2b LTR MaLR 1 349 -30 6 1575 246 32 0 0 chr5 129842872 129842903 -22694356 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1575 2062 149 34 17 chr5 129842908 129843262 -22693997 + ORR1B2 LTR MaLR 8 367 0 6 1575 279 0 0 0 chr5 129843867 129843898 -22693361 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1575 298 283 77 35 chr5 129845013 129845156 -22692103 + MLT1J LTR MaLR 13 161 -351 6 1575 223 270 43 33 chr5 129845417 129845509 -22691750 + MIRb SINE MIR 87 179 -89 6 1575 203 376 79 3 chr5 129845876 129846047 -22691212 + MIR SINE MIR 1 190 -78 6 1575 1107 204 0 9 chr5 129847621 129847843 -22689416 - URR1A DNA MER1_type 0 226 7 6 1575 1202 58 0 0 chr5 129847851 129848007 -22689252 + B2_Mm2 SINE B2 5 160 -35 6 1575 186 133 0 0 chr5 129848735 129848765 -22688494 + (CAT)n Simple_repeat Simple_repeat 2 31 0 6 1575 2106 114 126 0 chr5 129851741 129852091 -22685168 + ORR1B1 LTR MaLR 1 394 0 6 1575 1152 75 0 0 chr5 129853358 129853505 -22683754 + B1_Mus1 SINE Alu 2 148 0 6 1575 218 98 49 0 chr5 129853506 129853547 -22683712 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 6 1575 2332 18 0 7 chr5 129853597 129853878 -22683381 - L1Md_A LINE L1 0 6582 6304 6 1575 648 160 0 0 chr5 129855022 129855141 -22682118 + (ATG)n Simple_repeat Simple_repeat 2 120 0 6 1575 444 332 87 29 chr5 129855145 129855353 -22681906 + MT2A LTR ERVL 245 464 -69 6 1575 351 214 0 0 chr5 129855370 129855440 -22681819 + U2 snRNA snRNA 1 70 -118 6 1575 665 272 17 67 chr5 129856560 129856800 -22680459 + B4 SINE B4 24 251 -41 6 1575 276 186 0 0 chr5 129856895 129856954 -22680305 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 6 1575 1218 212 202 46 chr5 129857015 129857471 -22679788 + RMER4B LTR ERVK 35 561 -24 6 1575 218 266 62 15 chr5 129857504 129857569 -22679690 - ID4_ SINE ID -13 70 3 6 1575 247 320 54 39 chr5 129857573 129857703 -22679556 - B1F1 SINE Alu 0 149 18 6 1575 468 204 22 11 chr5 129857839 129858017 -22679242 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1575 681 165 19 19 chr5 129858028 129858289 -22678970 + (CA)n Simple_repeat Simple_repeat 1 261 0 6 1575 1225 198 167 3 chr5 129858430 129858759 -22678500 + MTD LTR MaLR 35 417 -2 6 1575 207 254 0 0 chr5 129859662 129859717 -22677542 + G-rich Low_complexity Low_complexity 5 59 0 6 1575 546 133 0 0 chr5 129859986 129860076 -22677183 + (TG)n Simple_repeat Simple_repeat 1 90 0 6 1575 505 187 28 18 chr5 129860404 129860513 -22676746 + PB1D7 SINE Alu 2 111 -9 7 1575 1949 148 62 19 chr5 129861457 129861830 -22675429 + ORR1B1 LTR MaLR 1 389 -5 7 1575 288 205 96 16 chr5 129862491 129862592 -22674667 - MLT1J LTR MaLR -323 189 44 7 1575 210 91 0 0 chr5 129865330 129865363 -22671896 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 7 1575 288 0 0 0 chr5 129866167 129866199 -22671060 + (TC)n Simple_repeat Simple_repeat 1 32 0 7 1575 337 150 11 101 chr5 129867053 129867119 -22670140 - MTEb LTR MaLR 0 379 320 7 1575 2220 128 31 16 chr5 129867119 129867507 -22669752 + ORR1B1 LTR MaLR 1 394 0 7 1575 337 150 11 101 chr5 129867507 129867529 -22669730 - MTEb LTR MaLR -60 319 299 7 1575 677 177 85 0 chr5 129868084 129868214 -22669045 + B1_Mur1 SINE Alu 1 141 -8 7 1575 669 118 13 26 chr5 129868217 129868373 -22668886 + (CAGAGA)n Simple_repeat Simple_repeat 2 155 0 7 1575 353 227 55 0 chr5 129868375 129868503 -22668756 + (TA)n Simple_repeat Simple_repeat 1 135 0 7 1575 1066 76 21 0 chr5 129872898 129873042 -22664217 - B1_Mus1 SINE Alu 0 148 2 7 1575 558 153 31 92 chr5 129873052 129873182 -22664077 - ID_B1 SINE B4 -7 217 96 7 1575 333 204 61 111 chr5 129873093 129873192 -22664067 - PB1D10 SINE Alu -22 95 2 7 1575 500 337 178 31 chr5 129873486 129873748 -22663511 + MLT2B3 LTR ERVL 71 373 -181 7 1575 1405 245 57 15 chr5 129873748 129874150 -22663109 + MTD LTR MaLR 1 419 0 7 1575 500 337 178 31 chr5 129874150 129874268 -22662991 + MLT2B3 LTR ERVL 374 512 -42 7 1575 477 0 0 0 chr5 129874268 129874321 -22662938 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1575 500 337 178 31 chr5 129874321 129874361 -22662898 + MLT2B3 LTR ERVL 513 553 -1 7 1575 417 86 0 0 chr5 129874462 129874520 -22662739 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1575 231 191 31 16 chr5 129874841 129874905 -22662354 + (TCTG)n Simple_repeat Simple_repeat 4 68 0 7 1575 612 141 0 0 chr5 129874906 129875041 -22662218 + (TC)n Simple_repeat Simple_repeat 2 136 0 7 1575 279 0 0 0 chr5 129875041 129875072 -22662187 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1575 244 276 117 62 chr5 129875162 129875324 -22661935 - MTE2b LTR MaLR -114 245 75 7 1575 574 246 12 83 chr5 129875380 129875602 -22661657 + MTE2a LTR MaLR 1 230 -189 7 1575 1151 259 49 18 chr5 129875631 129875957 -22661302 + ORR1E LTR MaLR 24 359 0 7 1575 1007 24 0 0 chr5 129876245 129876371 -22660888 + B1_Mm SINE Alu 22 147 0 7 1575 261 0 0 0 chr5 129876371 129876400 -22660859 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1575 2251 240 110 30 chr5 129876537 129877228 -22660031 - RMER13A LTR ERVK -114 746 1 7 1575 610 227 194 9 chr5 129877228 129877448 -22659811 + RMER21B LTR ERV1 307 567 -275 7 1575 267 190 0 0 chr5 129877594 129877652 -22659607 + (CTG)n Simple_repeat Simple_repeat 1 58 0 7 1575 1478 253 34 19 chr5 129877662 129878072 -22659187 + MTD LTR MaLR 3 405 -14 7 1575 252 0 0 0 chr5 129878408 129878436 -22658823 + (CA)n Simple_repeat Simple_repeat 2 29 0 7 1575 469 290 244 20 chr5 129878705 129879025 -22658234 - MLT1A0 LTR MaLR -2 406 1 7 1575 1434 202 71 74 chr5 129879271 129879651 -22657608 + MTE2b LTR MaLR 1 379 0 7 1575 369 228 86 8 chr5 129879660 129879788 -22657471 - MLT1C LTR MaLR -24 443 306 7 1575 392 211 0 0 chr5 129879776 129879852 -22657407 - MTE2b LTR MaLR -303 76 1 7 1575 264 247 39 13 chr5 129879955 129880033 -22657226 - MLT1A LTR MaLR -151 223 144 7 1575 428 289 19 57 chr5 129880102 129880260 -22656999 - ORR1E LTR MaLR -207 152 1 7 1575 340 198 20 71 chr5 129881343 129881441 -22655818 + ORR1E LTR MaLR 42 134 -225 7 1575 742 196 104 16 chr5 129881461 129881643 -22655616 + RLTR11A LTR ERVK 4 201 -327 7 1575 1383 25 20 20 chr5 129881643 129882091 -22655168 + (TAGA)n Simple_repeat Simple_repeat 1 448 0 7 1575 3910 144 92 84 chr5 129882287 129883230 -22654029 - RLTR25B LTR ERVK 0 1103 1 7 1575 350 309 121 8 chr5 129883230 129883408 -22653851 - MLT1E2 LTR MaLR -137 487 285 7 1575 343 273 0 10 chr5 129883729 129883829 -22653430 + CT-rich Low_complexity Low_complexity 1 99 0 7 1575 1334 244 105 56 chr5 129883944 129884447 -22652812 + RLTR11A LTR ERVK 1 528 0 7 1575 439 81 17 59 chr5 129884552 129884670 -22652589 + CT-rich Low_complexity Low_complexity 3 115 0 7 1575 247 289 179 36 chr5 129885387 129885527 -22651732 - MLT1E2 LTR MaLR -260 252 93 7 1575 435 304 6 5 chr5 129885574 129885739 -22651520 + L1MA5 LINE L1 6139 6300 0 7 1575 1871 120 39 72 chr5 129888298 129888631 -22648628 + ORR1A3 LTR MaLR 5 326 0 7 1575 936 62 0 23 chr5 129889437 129889568 -22647691 + B1_Mus1 SINE Alu 8 135 -13 7 1575 1665 36 0 0 chr5 129889602 129889794 -22647465 - B2_Mm1a SINE B2 0 193 2 7 1575 230 160 20 0 chr5 129889822 129889872 -22647387 + GA-rich Low_complexity Low_complexity 2 52 0 7 1575 898 219 27 5 chr5 129889952 129890140 -22647119 + B3 SINE B2 1 192 -24 7 1575 189 0 0 0 chr5 129890305 129890326 -22646933 + (ACTG)n Simple_repeat Simple_repeat 3 23 0 7 1575 21 0 0 0 chr5 129890650 129890671 -22646588 + AT_rich Low_complexity Low_complexity 1 21 0 7 1575 1016 111 0 0 chr5 129890681 129890816 -22646443 + B1_Mus1 SINE Alu 1 135 -13 7 1575 2313 66 83 0 chr5 129891259 129891561 -22645698 - ORR1A2 LTR MaLR 0 327 1 7 1575 507 17 0 0 chr5 129892189 129892249 -22645010 + (GA)n Simple_repeat Simple_repeat 2 61 0 7 1576 306 0 0 0 chr5 129892570 129892604 -22644655 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1576 462 18 0 0 chr5 129892616 129892671 -22644588 + (GA)n Simple_repeat Simple_repeat 1 55 0 7 1576 306 0 0 0 chr5 129892992 129893026 -22644233 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1576 476 32 16 0 chr5 129893038 129893100 -22644159 + (GA)n Simple_repeat Simple_repeat 1 63 0 7 1576 207 0 0 0 chr5 129893131 129893154 -22644105 + (GGTTG)n Simple_repeat Simple_repeat 4 26 0 7 1576 2007 182 16 29 chr5 129893298 129893682 -22643577 + RMER20B LTR ERVK 1 379 -248 7 1576 253 229 31 62 chr5 129893695 129893760 -22643499 + RMER20B LTR ERVK 544 606 -21 7 1576 189 0 0 0 chr5 129893764 129893785 -22643474 + (CACCC)n Simple_repeat Simple_repeat 4 24 0 7 1576 1050 180 11 21 chr5 129895017 129895204 -22642055 + B3 SINE B2 31 215 -1 7 1576 212 333 46 35 chr5 129895251 129895338 -22641921 - MER5A DNA MER1_type -10 179 92 7 1576 254 277 31 0 chr5 129895512 129895577 -22641682 + B3 SINE B2 2 68 -148 7 1576 227 183 47 47 chr5 129896164 129896250 -22641009 - Charlie7 DNA MER1_type -56 2556 2471 7 1576 697 135 11 48 chr5 129896254 129896441 -22640818 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 7 1576 802 103 17 0 chr5 129897668 129897784 -22639475 + PB1D9 SINE Alu 2 119 -1 7 1576 651 117 0 0 chr5 129897784 129897887 -22639372 + (GA)n Simple_repeat Simple_repeat 1 103 0 7 1576 669 70 0 0 chr5 129900166 129900266 -22636993 + (TC)n Simple_repeat Simple_repeat 1 100 0 7 1576 216 0 0 0 chr5 129900266 129900289 -22636970 + (CA)n Simple_repeat Simple_repeat 1 24 0 7 1576 252 0 0 0 chr5 129900781 129900809 -22636450 + (TC)n Simple_repeat Simple_repeat 2 29 0 7 1576 477 0 0 0 chr5 129900809 129900861 -22636398 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1576 245 300 60 48 chr5 129900923 129901007 -22636252 - RSINE1 SINE B4 0 165 81 7 1576 282 315 108 62 chr5 129901512 129901881 -22635378 + L1MCa LINE L1 1151 1536 -4887 7 1576 540 284 193 39 chr5 129901962 129902486 -22634773 + L1MCa LINE L1 1759 2278 -4850 7 1576 1410 152 4 26 chr5 129902850 129903080 -22634179 + URR1A DNA MER1_type 1 225 -1 7 1576 1567 112 72 32 chr5 129903316 129903593 -22633666 + ORR1A2 LTR MaLR 32 319 -8 7 1576 276 30 0 0 chr5 129903644 129903677 -22633582 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 7 1576 1178 322 59 19 chr5 129904200 129904907 -22632352 + L1MCa LINE L1 2972 3729 -3212 7 1576 4688 174 26 59 chr5 129905000 129905988 -22631271 - RMER17B LTR ERVK 0 958 3 7 1576 280 188 92 15 chr5 129906138 129906203 -22631056 + ID4 SINE ID 1 70 -13 7 1576 2246 90 0 0 chr5 129906414 129906714 -22630545 + ORR1A3 LTR MaLR 27 326 0 7 1576 245 324 117 7 chr5 129906813 129906950 -22630309 + Charlie8 DNA MER1_type 71 222 -2206 7 1576 323 276 134 31 chr5 129907157 129907218 -22630041 - RLTR20A2 LTR ERVK -28 550 492 7 1576 228 35 0 0 chr5 129907218 129907247 -22630012 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1576 323 276 134 31 chr5 129907247 129907282 -22629977 - RLTR20A2 LTR ERVK -87 491 444 7 1576 452 42 18 1 chr5 129908128 129908205 -22629054 + B1_Mus2 SINE Alu 40 149 0 7 1576 267 54 0 0 chr5 129908205 129908242 -22629017 + (CAA)n Simple_repeat Simple_repeat 3 39 0 7 1576 2386 84 0 0 chr5 129908275 129908584 -22628675 + ORR1A2 LTR MaLR 11 319 -8 7 1576 204 233 36 121 chr5 129909377 129909460 -22627799 - MIRm SINE MIR -95 181 106 7 1576 238 215 175 12 chr5 129909426 129909506 -22627753 - MIRc SINE MIR -132 136 44 7 1576 2200 175 61 5 chr5 129909639 129910030 -22627229 + MTC LTR MaLR 1 413 -8 7 1576 324 188 0 0 chr5 129911918 129911982 -22625277 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1576 1202 289 58 14 chr5 129913027 129913388 -22623871 - MTEa LTR MaLR -2 377 1 7 1576 1479 237 43 41 chr5 129914214 129914583 -22622676 + ORR1D2 LTR MaLR 1 370 0 7 1576 330 67 0 0 chr5 129914762 129914807 -22622452 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 7 1576 502 162 167 28 chr5 129914973 129915081 -22622178 - MTD LTR MaLR -1 418 296 7 1576 207 236 0 35 chr5 129916417 129916474 -22620785 + (TATG)n Simple_repeat Simple_repeat 3 57 0 7 1576 291 167 11 35 chr5 129916491 129916578 -22620681 + (TATG)n Simple_repeat Simple_repeat 2 86 0 7 1576 492 18 0 0 chr5 129916621 129916678 -22620581 + (TG)n Simple_repeat Simple_repeat 2 58 0 7 1576 2528 124 12 10 chr5 129916679 129917093 -22620166 + BGLII LTR ERVK 7 421 0 7 1576 275 311 24 30 chr5 129917126 129917292 -22619967 + (TATATG)n Simple_repeat Simple_repeat 4 168 0 7 1576 263 250 0 0 chr5 129917747 129917887 -22619372 + (ATG)n Simple_repeat Simple_repeat 1 140 0 7 1576 231 246 145 16 chr5 129918426 129918488 -22618771 - B1F1 SINE Alu -79 70 1 7 1576 521 267 0 8 chr5 129918488 129918551 -22618708 - B4 SINE B4 -207 85 24 8 1576 451 248 62 34 chr5 129918552 129918698 -22618561 + B4 SINE B4 143 292 0 8 1576 222 94 0 0 chr5 129918698 129918730 -22618529 + (CA)n Simple_repeat Simple_repeat 1 32 0 8 1576 299 256 17 28 chr5 129918736 129918917 -22618342 + (CATA)n Simple_repeat Simple_repeat 1 179 0 8 1576 294 29 0 0 chr5 129918919 129918954 -22618305 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 8 1576 359 302 54 117 chr5 129919231 129919471 -22617788 + URR1B DNA MER1_type 1 225 0 8 1576 502 269 44 25 chr5 129919855 129920015 -22617244 + MTE2a LTR MaLR 6 168 -211 8 1576 303 49 0 0 chr5 129920385 129920426 -22616833 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1576 350 285 154 48 chr5 129921434 129921707 -22615552 + L1M4 LINE L1 584 885 -5657 8 1576 31 0 0 0 chr5 129921818 129921849 -22615410 + AT_rich Low_complexity Low_complexity 1 31 0 8 1576 198 0 0 0 chr5 129922363 129922385 -22614874 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1576 667 186 6 6 chr5 129922535 129922697 -22614562 + CT-rich Low_complexity Low_complexity 2 163 0 8 1576 772 296 98 44 chr5 129922745 129923020 -22614239 - B4 SINE B4 0 292 3 8 1576 552 126 0 0 chr5 129923340 129923427 -22613832 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 8 1576 293 133 44 0 chr5 129923700 129923745 -22613514 + RSINE1 SINE B4 4 50 -115 8 1576 763 54 54 0 chr5 129923756 129923903 -22613356 + (CA)n Simple_repeat Simple_repeat 2 156 0 8 1576 441 0 0 0 chr5 129923981 129924030 -22613229 + (GTTTG)n Simple_repeat Simple_repeat 2 50 0 8 1576 1161 44 22 0 chr5 129924030 129924166 -22613093 - B1_Mus1 SINE Alu -9 139 1 8 1576 587 125 0 0 chr5 129924238 129924326 -22612933 + B2_Mm2 SINE B2 6 93 -102 8 1576 724 248 0 21 chr5 129925096 129925240 -22612019 + RSINE1 SINE B4 2 142 -23 8 1576 314 272 104 71 chr5 129925240 129925278 -22611981 + B2_Mm2 SINE B2 1 188 -7 8 1576 2289 139 3 17 chr5 129925420 129925779 -22611480 - ORR1B1 LTR MaLR 0 394 41 8 1576 255 146 0 63 chr5 129926718 129926813 -22610446 + (TCTCTG)n Simple_repeat Simple_repeat 5 93 0 8 1576 1032 187 46 5 chr5 129926933 129927127 -22610132 + B3 SINE B2 1 202 -14 8 1576 554 82 30 10 chr5 129927132 129927231 -22610028 + (AGGGGG)n Simple_repeat Simple_repeat 6 106 0 8 1576 310 320 90 56 chr5 129927231 129927519 -22609740 + L1M4b LINE L1 1897 2194 -4814 8 1576 404 303 68 72 chr5 129927657 129927906 -22609353 + L1M4b LINE L1 2588 2835 -4499 8 1576 1051 209 24 0 chr5 129927989 129928199 -22609060 + B3 SINE B2 2 216 0 8 1576 441 155 14 0 chr5 129928458 129928529 -22608730 + ID4_ SINE ID 2 73 -10 8 1576 528 158 9 17 chr5 129928533 129928649 -22608610 + GA-rich Low_complexity Low_complexity 4 118 0 8 1576 1208 305 104 34 chr5 129929137 129930146 -22607113 + L1M4b LINE L1 3769 4848 -2158 8 1576 316 256 65 34 chr5 129930179 129930300 -22606959 + B1F1 SINE Alu 2 138 -11 8 1576 2372 190 0 44 chr5 129930475 129930910 -22606349 + MTC LTR MaLR 2 417 -4 8 1576 273 272 40 20 chr5 129933878 129934028 -22603231 + (TCCA)n Simple_repeat Simple_repeat 3 155 0 8 1576 231 202 36 0 chr5 129934098 129934182 -22603077 + (TCCA)n Simple_repeat Simple_repeat 3 89 0 8 1576 217 271 34 0 chr5 129934298 129934357 -22602902 + MIRb SINE MIR 40 100 -168 8 1576 620 279 52 52 chr5 129936734 129936750 -22600509 - B3 SINE B2 -3 213 195 8 1576 186 43 0 0 chr5 129936750 129936773 -22600486 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 1576 722 276 31 10 chr5 129936773 129936968 -22600291 - B3A SINE B2 -22 194 2 8 1576 246 226 10 65 chr5 129937304 129937412 -22599847 - ORR1A2 LTR MaLR -140 238 138 8 1576 1176 231 67 87 chr5 129937389 129937711 -22599548 + MT2B LTR ERVL 253 546 -55 8 1576 251 0 59 0 chr5 129937711 129937745 -22599514 + (CAGA)n Simple_repeat Simple_repeat 1 36 0 8 1576 1176 231 67 87 chr5 129937745 129937778 -22599481 + MT2B LTR ERVL 547 601 0 8 1576 2077 125 1 72 chr5 129937819 129938172 -22599087 - ORR1A3 LTR MaLR 0 379 1 8 1576 243 0 0 0 chr5 129938390 129938417 -22598842 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1576 275 222 135 27 chr5 129938487 129938561 -22598698 + ID4 SINE ID 2 83 0 8 1576 313 296 43 132 chr5 129938701 129938943 -22598316 + L1MD LINE L1 3195 3400 -2746 8 1576 861 262 24 5 chr5 129938943 129939154 -22598105 + B3 SINE B2 1 215 -1 8 1576 313 296 43 132 chr5 129939154 129939381 -22597878 + L1MD LINE L1 3401 3622 -2524 8 1576 318 50 0 0 chr5 129939471 129939511 -22597748 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1576 351 0 0 0 chr5 129939511 129939549 -22597710 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1576 429 20 0 0 chr5 129939807 129939857 -22597402 + (TG)n Simple_repeat Simple_repeat 2 51 0 8 1576 302 145 63 16 chr5 129939863 129939926 -22597333 - MTEb LTR MaLR -14 365 300 8 1576 2199 136 16 33 chr5 129939927 129940292 -22596967 + ORR1B2 LTR MaLR 1 359 -8 8 1576 280 284 32 54 chr5 129940401 129940494 -22596765 - MTEb LTR MaLR -269 110 20 8 1576 484 301 62 31 chr5 129940517 129940678 -22596581 + MLT1A0 LTR MaLR 86 251 -114 8 1576 1240 279 22 85 chr5 129941163 129941563 -22595696 + MTE2a LTR MaLR 1 375 -4 8 1576 538 163 7 2 chr5 129941632 129941740 -22595519 - Lx2B LINE L1 -97 6961 6757 8 1576 1350 124 0 19 chr5 129941740 129941946 -22595313 - URR1B DNA MER1_type -22 203 2 8 1576 309 26 0 0 chr5 129942057 129942095 -22595164 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1576 2890 14 5 157 chr5 129943315 129943748 -22593511 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1576 8381 80 66 13 chr5 129943750 129945042 -22592217 + IAPEz-int LTR ERVK 3 1313 -5168 8 1576 28168 17 1 1 chr5 129945041 129948315 -22588944 + IAPEz-int LTR ERVK 3210 6481 0 8 1576 2715 14 5 157 chr5 129948315 129948748 -22588511 + IAPLTR1_Mm LTR ERVK 1 367 0 8 1576 2411 137 31 17 chr5 129949207 129949622 -22587637 + MTC LTR MaLR 1 421 0 8 1576 820 151 7 0 chr5 129949691 129949830 -22587429 + URR1B DNA MER1_type 85 224 -1 8 1576 806 243 0 47 chr5 129950001 129950191 -22587068 + B3A SINE B2 2 182 -16 8 1576 279 0 0 0 chr5 129950191 129950222 -22587037 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1576 457 238 10 0 chr5 129950618 129950719 -22586540 + MTEb LTR MaLR 1 102 -277 8 1576 1711 161 42 33 chr5 129950721 129951010 -22586249 + ORR1A1 LTR MaLR 3 305 -41 8 1576 1351 60 32 27 chr5 129951010 129951197 -22586062 + B2_Mm2 SINE B2 1 188 -7 8 1576 1711 161 42 33 chr5 129951197 129951241 -22586018 + ORR1A1 LTR MaLR 306 339 -7 8 1576 854 229 109 0 chr5 129951245 129951455 -22585804 + MTEb LTR MaLR 147 379 0 8 1576 230 235 22 90 chr5 129951990 129952079 -22585180 + MT2B2 LTR ERVL 173 255 -329 8 1576 344 286 44 0 chr5 129952000 129952091 -22585168 + PB1D10 SINE Alu 18 112 -5 8 1576 541 245 37 52 chr5 129952119 129952285 -22584974 + RSINE1 SINE B4 1 165 0 8 1576 978 130 14 0 chr5 129952333 129952479 -22584780 + B1_Mus1 SINE Alu 1 148 0 8 1576 394 210 12 36 chr5 129952565 129952649 -22584610 + B1_Mur2 SINE Alu 13 94 -55 8 1576 225 258 90 15 chr5 129954064 129954131 -22583128 - MER102b DNA MER1_type -185 156 85 8 1576 623 268 55 22 chr5 129954537 129954720 -22582539 - B4A SINE B4 -101 191 3 8 1576 965 180 8 0 chr5 129956426 129956671 -22580588 + CT-rich Low_complexity Low_complexity 1 247 0 8 1576 485 308 28 7 chr5 129956854 129956998 -22580261 - RSINE1 SINE B4 -8 157 11 8 1576 512 205 80 80 chr5 129957675 129957813 -22579446 - B1_Mur1 SINE Alu -10 139 2 8 1576 256 267 115 0 chr5 129957860 129957885 -22579374 - B1F2 SINE Alu 0 117 5 8 1576 255 304 76 0 chr5 129957885 129957964 -22579295 - ID_B1 SINE B4 -54 170 86 8 1576 378 0 0 0 chr5 129958016 129958058 -22579201 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 8 1576 750 231 45 34 chr5 129958058 129958229 -22579030 - B3A SINE B2 -15 183 8 8 1576 378 0 0 0 chr5 129958290 129958332 -22578927 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1576 438 285 8 16 chr5 129958336 129958461 -22578798 - RSINE1 SINE B4 -38 127 4 8 1576 2289 93 84 3 chr5 129959344 129959700 -22577559 - ORR1B1 LTR MaLR -8 386 2 8 1576 211 279 0 0 chr5 129960282 129960325 -22576934 + (CACG)n Simple_repeat Simple_repeat 4 46 0 8 1576 247 257 58 47 chr5 129960619 129960757 -22576502 + MIRb SINE MIR 14 142 -134 8 1576 568 276 75 20 chr5 129960936 129961136 -22576123 - ORSL DNA Tip100 -4 271 61 8 1576 681 13 0 0 chr5 129961698 129961776 -22575483 + (GGA)n Simple_repeat Simple_repeat 1 78 0 8 1576 1569 207 149 98 chr5 129962953 129963516 -22573743 + RMER20B LTR ERVK 11 602 -25 8 1576 340 276 185 7 chr5 129964165 129964300 -22572959 + RSINE1 SINE B4 3 161 -4 8 1576 1093 131 11 6 chr5 129964777 129964954 -22572305 + B2_Mm1t SINE B2 2 179 -14 8 1576 298 75 0 19 chr5 129965043 129965097 -22572162 + B2_Mm2 SINE B2 137 189 -6 8 1576 1034 62 6 82 chr5 129968549 129968609 -22568650 + B1_Mus1 SINE Alu 2 61 -87 8 1576 641 36 0 12 chr5 129968609 129968694 -22568565 + (TTTTG)n Simple_repeat Simple_repeat 2 85 0 8 1576 1091 52 0 0 chr5 129968694 129968830 -22568429 - B1_Mm SINE Alu -10 137 2 8 1576 1034 62 6 82 chr5 129968830 129968926 -22568333 + B1_Mus1 SINE Alu 62 146 -2 8 1576 994 286 28 83 chr5 129969131 129969528 -22567731 - MTE2a LTR MaLR 0 379 5 8 1576 467 314 82 12 chr5 129969581 129969979 -22567280 - L1MD LINE L1 -749 5397 4964 8 1576 465 19 0 0 chr5 129970592 129970646 -22566613 + (TC)n Simple_repeat Simple_repeat 1 54 0 8 1576 1613 134 105 64 chr5 129971887 129972074 -22565185 + RMER17C LTR ERVK 1 188 -222 8 1576 309 26 0 0 chr5 129972074 129972112 -22565147 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1576 225 0 0 0 chr5 129972112 129972136 -22565123 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1576 1613 134 105 64 chr5 129972136 129972337 -22564922 + RMER17C LTR ERVK 189 405 -5 8 1576 1223 107 11 0 chr5 129972694 129972871 -22564388 + B2_Mm1t SINE B2 1 179 -14 8 1576 342 109 0 23 chr5 129972918 129972984 -22564275 + B2_Mm2 SINE B2 47 109 -107 8 1576 243 0 0 0 chr5 129972996 129973023 -22564236 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 8 1576 252 0 0 0 chr5 129973150 129973178 -22564081 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 9 1576 378 202 10 128 chr5 129974539 129974798 -22562461 + (CACCC)n Simple_repeat Simple_repeat 1 228 0 9 1576 1327 196 114 13 chr5 129975080 129975446 -22561813 - MTC LTR MaLR 0 421 1 9 1576 962 153 6 33 chr5 129976895 129977077 -22560182 + B2_Mm2 SINE B2 1 177 -18 9 1576 404 0 39 0 chr5 129977698 129977749 -22559510 + (TTTC)n Simple_repeat Simple_repeat 3 55 0 9 1576 1727 192 47 12 chr5 129977749 129978087 -22559172 - Lx5 LINE L1 -14 7036 6687 9 1576 257 275 0 0 chr5 129978088 129978157 -22559102 + Lx5 LINE L1 6588 6656 -394 9 1576 569 94 55 24 chr5 129978702 129978866 -22558393 + (CA)n Simple_repeat Simple_repeat 2 170 0 9 1576 387 142 36 36 chr5 129978924 129979092 -22558167 + (CA)n Simple_repeat Simple_repeat 1 168 0 9 1576 183 220 0 0 chr5 129979114 129979164 -22558095 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1576 369 0 0 0 chr5 129979978 129980019 -22557240 + (TCTA)n Simple_repeat Simple_repeat 3 43 0 9 1576 504 298 0 58 chr5 129980475 129980646 -22556613 - HAL1-2a_MD LINE L1 -517 2507 2347 9 1576 1162 253 100 14 chr5 129980894 129981243 -22556016 + MTE2b LTR MaLR 1 379 0 9 1576 407 256 82 8 chr5 129981424 129981546 -22555713 + MER34A LTR ERV1 436 566 -5 9 1576 819 189 117 56 chr5 129982258 129982454 -22554805 - URR1A DNA MER1_type -18 208 1 9 1576 271 191 0 0 chr5 129983335 129983382 -22553877 - MLT1I LTR MaLR 0 411 365 9 1576 222 257 51 68 chr5 129984322 129984439 -22552820 + MIRb SINE MIR 41 149 -59 9 1576 1591 199 86 72 chr5 129984643 129985099 -22552160 + MT2B LTR ERVL 2 556 -45 9 1576 375 23 0 0 chr5 129985099 129985143 -22552116 + (TA)n Simple_repeat Simple_repeat 2 45 0 9 1576 1591 197 34 43 chr5 129985143 129985186 -22552073 + MT2B LTR ERVL 557 599 -2 9 1576 647 248 48 0 chr5 129985556 129985701 -22551558 + RSINE1 SINE B4 2 153 -12 9 1576 202 352 46 23 chr5 129986470 129986601 -22550658 + L2a LINE L2 3293 3426 0 9 1576 634 176 13 0 chr5 129986609 129986762 -22550497 + (TGGA)n Simple_repeat Simple_repeat 1 155 0 9 1576 564 89 0 0 chr5 129987821 129987900 -22549359 + (TGAG)n Simple_repeat Simple_repeat 1 79 0 9 1576 1041 106 43 0 chr5 129988067 129988228 -22549031 + B2_Mm2 SINE B2 2 169 -26 9 1576 586 353 60 28 chr5 129988439 129988687 -22548572 + B4A SINE B4 35 290 -2 9 1576 486 0 0 0 chr5 129988749 129988803 -22548456 + (CA)n Simple_repeat Simple_repeat 1 54 0 9 1576 336 371 107 33 chr5 129988864 129989285 -22547974 + L1M4c LINE L1 2030 2481 -3903 9 1576 216 210 0 46 chr5 129989286 129989309 -22547950 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 9 1576 980 122 7 0 chr5 129989309 129989456 -22547803 - B1_Mus1 SINE Alu 0 148 1 9 1576 216 210 0 46 chr5 129989456 129989497 -22547762 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 9 1576 363 23 0 0 chr5 129989511 129989555 -22547704 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1576 807 272 76 30 chr5 129989561 129989823 -22547436 - B4 SINE B4 -11 281 8 9 1576 297 224 15 15 chr5 129989947 129990015 -22547244 - MTD LTR MaLR -148 271 204 9 1576 3520 162 14 15 chr5 129990024 129990674 -22546585 - Lx2B LINE L1 -8 6992 6344 9 1576 376 333 6 12 chr5 129990675 129990842 -22546417 + L1M4c LINE L1 2475 2640 -3736 9 1576 401 299 152 45 chr5 129991177 129991597 -22545662 + L1M4c LINE L1 4437 4901 -1475 9 1576 2056 191 122 74 chr5 129991624 129992205 -22545054 - RMER19C LTR ERVK 0 611 3 9 1576 601 323 65 23 chr5 129992361 129992614 -22544645 + L1M4c LINE L1 5522 5785 -634 9 1576 1140 29 0 0 chr5 129992614 129992750 -22544509 + B1_Mus1 SINE Alu 2 137 -11 9 1576 342 0 0 0 chr5 129992750 129992788 -22544471 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 9 1576 601 336 63 23 chr5 129992788 129992877 -22544382 + L1M4c LINE L1 5786 5877 -548 9 1576 252 182 14 43 chr5 129992922 129992991 -22544268 + L1M4c LINE L1 5996 6062 -342 9 1576 259 183 56 14 chr5 129993965 129994037 -22543222 + L2c LINE L2 3003 3077 -310 9 1576 228 35 0 0 chr5 129994508 129994537 -22542722 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9 1576 294 221 42 56 chr5 129994551 129994623 -22542636 + PB1D7 SINE Alu 42 112 -8 9 1576 692 319 70 16 chr5 129994632 129994874 -22542385 + B4A SINE B4 2 256 -36 9 1576 1194 41 0 0 chr5 129995051 129995197 -22542062 - B1_Mm SINE Alu 0 147 2 9 1576 1390 138 0 51 chr5 129995201 129995437 -22541822 + URR1B DNA MER1_type 1 224 -1 9 1576 1472 214 49 17 chr5 129996542 129996889 -22540370 + MTD LTR MaLR 45 402 -17 9 1576 593 177 121 0 chr5 129998083 129998207 -22539052 + B1F SINE Alu 10 148 -1 9 1576 825 235 12 20 chr5 129998518 129998717 -22538542 - ID_B1 SINE B4 0 224 26 9 1576 499 288 44 28 chr5 129998766 129998948 -22538311 - B3A SINE B2 -12 186 2 9 1576 232 340 105 14 chr5 129999168 129999311 -22537948 - L1M5 LINE L1 -297 5827 5672 9 1576 533 289 68 128 chr5 130000004 130000254 -22537005 + MTD LTR MaLR 76 310 -109 1 1576 261 365 88 67 chr5 130000414 130000699 -22536560 + ORR1E LTR MaLR 58 348 -11 2 1576 263 194 0 88 chr5 130001259 130001327 -22535932 + 4.5SRNA scRNA scRNA 23 84 -10 3 1576 672 167 0 0 chr5 130001279 130001387 -22535872 + B1_Mus2 SINE Alu 40 147 0 4 1576 714 277 81 66 chr5 130001430 130001701 -22535558 + B4 SINE B4 1 275 -17 5 1576 389 95 0 16 chr5 130001702 130001766 -22535493 + (CA)n Simple_repeat Simple_repeat 1 63 0 6 1576 1191 74 0 0 chr5 130002020 130002168 -22535091 + B1_Mus1 SINE Alu 1 148 0 7 1576 243 0 0 0 chr5 130002275 130002302 -22534957 + (TAA)n Simple_repeat Simple_repeat 2 28 0 8 1576 203 171 0 0 chr5 130002388 130002429 -22534830 + T-rich Low_complexity Low_complexity 1 41 0 9 1576 766 141 111 0 chr5 130002438 130002573 -22534686 - B1_Mur4 SINE Alu 0 150 1 1 1576 723 234 116 26 chr5 130002654 130002843 -22534416 + MTE2b LTR MaLR 2 207 -172 1 1576 1052 247 114 86 chr5 130002893 130003323 -22533936 + RLTR28B LTR ERVL 2 443 -38 1 1576 230 254 39 130 chr5 130003776 130003853 -22533406 + ID SINE ID 9 78 -146 1 1576 1277 152 0 22 chr5 130003841 130004063 -22533196 + URR1B DNA MER1_type 9 225 0 1 1576 1217 188 47 0 chr5 130004235 130004448 -22532811 + ID_B1 SINE B4 2 224 0 1 1576 219 69 0 0 chr5 130004683 130004712 -22532547 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 1 1576 258 32 0 0 chr5 130004932 130004963 -22532296 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1576 476 337 39 85 chr5 130005064 130005223 -22532036 - MER70A LTR ERVL -9 463 312 1 1576 1193 63 0 0 chr5 130005223 130005366 -22531893 + B1_Mus1 SINE Alu 1 143 -5 1 1576 476 337 39 85 chr5 130005366 130005537 -22531722 - MER70A LTR ERVL -161 311 148 1 1576 1162 270 15 30 chr5 130005557 130005828 -22531431 - B4 SINE B4 -16 276 10 2 1576 425 172 0 22 chr5 130005838 130005927 -22531332 + RCHARR1 DNA MER1_type 491 577 -397 2 1576 339 200 0 146 chr5 130006044 130006126 -22531133 - B4A SINE B4 0 292 223 2 1576 24 32 0 0 chr5 130006239 130006270 -22530989 + AT_rich Low_complexity Low_complexity 1 31 0 2 1576 286 267 28 0 chr5 130006368 130006455 -22530804 + ID2 SINE ID 10 98 -54 2 1576 214 333 104 31 chr5 130006497 130006593 -22530666 + PB1D7 SINE Alu 17 119 -1 2 1576 25 31 0 0 chr5 130007757 130007789 -22529470 + GC_rich Low_complexity Low_complexity 1 32 0 2 1576 21 36 0 0 chr5 130010503 130010531 -22526728 + AT_rich Low_complexity Low_complexity 1 28 0 2 1576 1029 68 68 0 chr5 130010857 130010990 -22526269 - B1_Mus1 SINE Alu -6 142 1 2 1576 1549 194 49 55 chr5 130011196 130011544 -22525715 - ORR1C2 LTR MaLR -38 346 1 2 1576 278 204 0 0 chr5 130011895 130011944 -22525315 + RSINE1 SINE B4 98 146 -19 3 1576 306 259 23 58 chr5 130012574 130012660 -22524599 + RSINE1 SINE B4 83 165 0 3 1576 264 122 0 0 chr5 130012970 130013011 -22524248 + (T)n Simple_repeat Simple_repeat 1 41 0 3 1576 383 267 37 28 chr5 130013272 130013380 -22523879 + PB1D7 SINE Alu 6 114 -6 3 1576 233 178 34 180 chr5 130013389 130013478 -22523781 + B3 SINE B2 2 77 -139 3 1576 613 294 22 22 chr5 130013956 130014140 -22523119 - ID_B1 SINE B4 -10 214 31 3 1576 671 242 101 63 chr5 130014527 130014734 -22522525 - B3A SINE B2 0 216 2 3 1576 482 250 197 4 chr5 130014850 130015000 -22522259 - B3A SINE B2 -26 169 3 3 1576 911 247 65 27 chr5 130015124 130015386 -22521873 - B4A SINE B4 -19 273 2 3 1576 2235 86 3 107 chr5 130015447 130015812 -22521447 - ORR1A2 LTR MaLR 0 327 1 3 1576 869 109 14 21 chr5 130016449 130016589 -22520670 - B1_Mur4 SINE Alu -1 149 11 4 1576 415 284 37 0 chr5 130016493 130016602 -22520657 - B4A SINE B4 -98 194 82 4 1576 263 229 90 15 chr5 130016602 130016622 -22520637 - ORR1B1-int LTR MaLR -755 750 612 4 1576 272 364 0 0 chr5 130016873 130016939 -22520320 - tRNA-Ala-GCY_ tRNA tRNA -8 67 2 4 1576 303 277 42 11 chr5 130016941 130017036 -22520223 - L1M5 LINE L1 -2976 3170 3073 4 1576 531 212 60 26 chr5 130017068 130017184 -22520075 - PB1D9 SINE Alu 0 120 1 4 1576 1579 201 57 22 chr5 130017285 130017651 -22519608 - MTE2a LTR MaLR 0 379 1 4 1576 673 241 90 0 chr5 130017734 130017879 -22519380 + RSINE1 SINE B4 2 159 -6 4 1576 205 264 0 0 chr5 130017880 130017933 -22519326 + A-rich Low_complexity Low_complexity 3 55 0 4 1576 672 243 49 21 chr5 130018319 130018462 -22518797 - RSINE1 SINE B4 -18 147 1 4 1576 657 342 0 0 chr5 130018643 130018798 -22518461 - RSINE1 SINE B4 -10 155 1 5 1576 366 247 53 11 chr5 130019698 130019792 -22517467 - PB1D9 SINE Alu -21 99 2 5 1576 415 290 18 18 chr5 130019823 130019932 -22517327 - RSINE1 SINE B4 0 165 57 5 1576 721 162 17 0 chr5 130020018 130020135 -22517124 + B1_Mus1 SINE Alu 14 132 -16 5 1576 279 300 54 43 chr5 130020166 130020293 -22516966 - B3 SINE B2 -11 205 2 5 1576 381 216 49 85 chr5 130020293 130020410 -22516849 - PB1D10 SINE Alu -37 110 7 5 1576 245 365 45 45 chr5 130020335 130020447 -22516812 - B4 SINE B4 -125 167 56 5 1576 386 276 0 44 chr5 130020508 130020599 -22516660 - B1F2 SINE Alu -59 90 4 5 1576 386 324 70 12 chr5 130022570 130022742 -22514517 - MER2 DNA MER2_type -163 182 1 5 1576 289 245 9 133 chr5 130023137 130023158 -22514101 + MT2B LTR ERVL 148 154 -447 5 1576 483 198 29 29 chr5 130023158 130023262 -22513997 + PB1D9 SINE Alu 2 105 -15 6 1577 474 125 0 0 chr5 130023707 130023787 -22513472 + (TG)n Simple_repeat Simple_repeat 2 81 0 6 1577 822 255 195 29 chr5 130023794 130024040 -22513219 - B4A SINE B4 -4 288 2 6 1577 291 203 17 0 chr5 130025310 130025369 -22511890 - B4 SINE B4 -209 83 24 6 1577 1043 83 0 14 chr5 130026002 130026149 -22511110 - B2_Mm1t SINE B2 -1 192 48 6 1577 241 304 82 144 chr5 130026186 130026211 -22511048 + B4 SINE B4 77 213 -79 6 1577 543 227 66 16 chr5 130026211 130026332 -22510927 + B1_Mur1 SINE Alu 10 136 -13 6 1577 201 275 0 38 chr5 130026792 130026845 -22510414 + (CACG)n Simple_repeat Simple_repeat 1 51 0 6 1577 257 255 177 21 chr5 130026845 130026941 -22510318 - RSINE1 SINE B4 -12 153 43 6 1577 400 299 71 10 chr5 130027201 130027397 -22509862 - Tigger13a DNA MER2_type -368 403 196 6 1577 950 217 23 36 chr5 130028477 130028489 -22508770 - ID_B1 SINE B4 0 224 216 7 1577 297 0 0 0 chr5 130028489 130028522 -22508737 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 7 1577 950 217 23 36 chr5 130028522 130028729 -22508530 - ID_B1 SINE B4 -9 215 8 7 1577 457 298 12 37 chr5 130029237 130029401 -22507858 - RSINE1 SINE B4 -2 163 4 7 1577 555 316 26 0 chr5 130029444 130029596 -22507663 - RSINE1 SINE B4 -8 157 2 7 1577 252 274 14 0 chr5 130029909 130029982 -22507277 + ID4 SINE ID 1 74 -9 7 1577 305 264 121 47 chr5 130030135 130030350 -22506909 - HAL1b LINE L1 -531 1478 1248 7 1577 301 258 29 49 chr5 130030396 130030498 -22506761 + PB1D7 SINE Alu 21 120 0 7 1577 654 281 11 50 chr5 130031482 130031662 -22505597 - MTE2a LTR MaLR -3 376 204 7 1577 288 0 0 0 chr5 130032018 130032050 -22505209 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1577 852 296 71 19 chr5 130032062 130032331 -22504928 - B4 SINE B4 0 292 10 7 1577 1227 68 0 0 chr5 130032331 130032478 -22504781 + B1_Mus2 SINE Alu 1 147 0 8 1577 289 211 14 40 chr5 130033911 130033985 -22503274 + PB1D7 SINE Alu 49 120 0 8 1577 444 352 20 27 chr5 130034551 130034700 -22502559 - RSINE1 SINE B4 0 165 18 8 1577 642 90 0 11 chr5 130034645 130034735 -22502524 - B1_Mm SINE Alu -57 90 2 8 1577 350 230 0 0 chr5 130035785 130035859 -22501400 + B1_Mur2 SINE Alu 74 147 -2 8 1577 787 258 45 57 chr5 130035893 130036140 -22501119 + B4A SINE B4 49 292 0 8 1577 369 332 112 53 chr5 130036605 130036655 -22500604 - MT2A LTR ERVL -16 517 470 8 1577 1248 48 7 0 chr5 130036655 130036802 -22500457 + B1_Mus1 SINE Alu 1 148 0 8 1577 267 31 0 0 chr5 130036807 130036839 -22500420 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1577 369 332 112 53 chr5 130036839 130037085 -22500174 - MT2A LTR ERVL -68 465 195 8 1577 791 193 158 11 chr5 130037085 130037268 -22499991 + B3 SINE B2 3 212 -4 8 1577 369 332 112 53 chr5 130037268 130037285 -22499974 - MT2A LTR ERVL -339 194 178 8 1577 306 298 36 0 chr5 130037338 130037422 -22499837 - MTEa LTR MaLR -232 147 61 9 1577 2162 234 132 99 chr5 130037472 130037751 -22499508 - MERVL_2A-int LTR ERVL -190 5567 5255 9 1577 275 219 65 52 chr5 130037751 130037828 -22499431 - B1F1 SINE Alu -41 108 31 9 1577 2162 234 132 99 chr5 130037828 130038400 -22498859 - MERVL_2A-int LTR ERVL -190 5254 4609 9 1577 3176 250 84 49 chr5 130038399 130038757 -22498502 - MERVL_2A-int LTR ERVL -1495 4266 3890 9 1577 757 242 6 32 chr5 130038757 130038915 -22498344 + RSINE1 SINE B4 4 157 -8 9 1577 3176 250 84 49 chr5 130038915 130039569 -22497690 - MERVL_2A-int LTR ERVL -1872 3889 3219 9 1577 353 368 53 49 chr5 130039790 130040056 -22497203 - MT2A LTR ERVL -202 331 65 9 1577 403 365 108 51 chr5 130039870 130040084 -22497175 - MTEa LTR MaLR -117 262 37 9 1577 719 264 102 38 chr5 130040623 130040859 -22496400 + Tigger7 DNA MER2_type 1 251 -2240 9 1577 450 352 107 0 chr5 130040939 130041183 -22496076 + Tigger7 DNA MER2_type 2175 2444 -47 9 1577 260 193 17 17 chr5 130041883 130041941 -22495318 + ID2 SINE ID 2 59 -24 9 1577 898 250 5 16 chr5 130042514 130042705 -22494554 - B3A SINE B2 -6 192 4 9 1577 387 277 0 11 chr5 130042789 130042884 -22494375 - L1MB2 LINE L1 -47 6124 6031 9 1577 243 0 0 0 chr5 130043062 130043089 -22494170 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1 1577 949 191 84 11 chr5 130044413 130044604 -22492655 + B3 SINE B2 2 206 -10 1 1577 518 219 10 0 chr5 130045300 130045396 -22491863 - ORR1E LTR MaLR -243 116 20 1 1577 320 301 0 24 chr5 130045802 130045864 -22491395 + PB1D10 SINE Alu 15 76 -41 1 1577 1241 68 67 11 chr5 130045864 130046043 -22491216 + B2_Mm1t SINE B2 1 189 -4 1 1577 375 229 90 33 chr5 130046043 130046158 -22491101 + B1_Mus2 SINE Alu 24 147 0 1 1577 334 295 0 64 chr5 130046197 130046291 -22490968 + PB1D10 SINE Alu 18 105 -12 1 1577 269 180 0 0 chr5 130046659 130046709 -22490550 + ID4 SINE ID 2 51 -32 1 1577 258 105 0 0 chr5 130046913 130046951 -22490308 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1577 295 217 96 0 chr5 130048253 130048336 -22488923 - PB1D7 SINE Alu -10 110 20 1 1577 316 222 14 0 chr5 130048655 130048727 -22488532 + ID4 SINE ID 1 73 -10 1 1577 951 7 44 0 chr5 130048727 130048863 -22488396 + (CA)n Simple_repeat Simple_repeat 1 142 0 1 1577 224 29 0 79 chr5 130048925 130048963 -22488296 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 1 1577 274 265 15 0 chr5 130048963 130049031 -22488228 - ID_B1 SINE B4 -57 167 99 1 1577 282 29 0 0 chr5 130051376 130051411 -22485848 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1577 1181 44 0 0 chr5 130051411 130051547 -22485712 - B1_Mus2 SINE Alu -11 136 1 1 1577 245 252 110 55 chr5 130052138 130052156 -22485103 - B3A SINE B2 -83 115 1 1 1577 353 297 22 0 chr5 130052156 130052247 -22485012 - RSINE1 SINE B4 -71 94 2 1 1577 1180 213 0 9 chr5 130052686 130052904 -22484355 + B3 SINE B2 1 216 0 1 1577 592 271 152 14 chr5 130052962 130053179 -22484080 + B4A SINE B4 2 248 -44 1 1577 289 282 12 25 chr5 130053258 130053338 -22483921 + PB1D10 SINE Alu 20 98 -19 1 1577 260 233 43 65 chr5 130053274 130053366 -22483893 + MT2B2 LTR ERVL 190 279 -305 1 1577 227 241 139 49 chr5 130054397 130054519 -22482740 - MT2A LTR ERVL -287 246 114 1 1577 26 0 0 0 chr5 130054778 130054804 -22482455 + AT_rich Low_complexity Low_complexity 1 26 0 1 1577 559 285 44 0 chr5 130054807 130054944 -22482315 + RSINE1 SINE B4 4 146 -19 1 1577 269 182 152 0 chr5 130057187 130057253 -22480006 + ID4 SINE ID 5 80 -3 1 1577 962 150 50 2 chr5 130057437 130057683 -22479576 - ORR1B2 LTR MaLR 0 367 1 1 1577 664 253 116 21 chr5 130058329 130058519 -22478740 + ID_B1 SINE B4 8 215 -9 1 1577 440 233 103 8 chr5 130058539 130058656 -22478603 + RSINE1 SINE B4 9 136 -29 1 1577 383 168 127 82 chr5 130059414 130059524 -22477735 + PB1D9 SINE Alu 5 119 -1 1 1577 449 296 38 0 chr5 130060060 130060192 -22477067 - B1F SINE Alu 0 149 13 1 1577 208 154 26 0 chr5 130060424 130060463 -22476796 + GA-rich Low_complexity Low_complexity 3 42 0 1 1577 237 231 39 0 chr5 130060839 130060891 -22476368 + PB1D10 SINE Alu 35 88 -29 1 1577 765 244 120 120 chr5 130060891 130061091 -22476168 + B4 SINE B4 5 232 -60 1 1577 709 210 14 20 chr5 130061091 130061237 -22476022 + B1_Mur1 SINE Alu 5 149 0 1 1577 765 244 120 120 chr5 130061237 130061311 -22475948 + B4 SINE B4 233 279 -13 1 1577 447 19 0 0 chr5 130061320 130061372 -22475887 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1577 266 396 10 10 chr5 130061428 130061530 -22475729 + ID_B1 SINE B4 86 187 -37 1 1577 414 0 0 0 chr5 130062310 130062356 -22474903 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1 1577 271 213 16 0 chr5 130064163 130064224 -22473035 + B4 SINE B4 79 140 -152 1 1577 276 205 167 0 chr5 130064174 130064252 -22473007 + B1_Mus1 SINE Alu 6 96 -52 1 1577 237 327 87 17 chr5 130067470 130067585 -22469674 - ORR1E LTR MaLR -217 142 20 1 1577 828 146 71 21 chr5 130068641 130068781 -22468478 - B1_Mus1 SINE Alu 0 148 2 1 1577 841 193 166 0 chr5 130069318 130069499 -22467760 - B3 SINE B2 -4 212 2 1 1577 539 224 75 0 chr5 130070010 130070144 -22467115 + RSINE1 SINE B4 22 165 0 1 1577 352 79 94 16 chr5 130070227 130070291 -22466968 + B1_Mur2 SINE Alu 73 141 -8 1 1577 364 215 64 11 chr5 130070667 130070761 -22466498 + ID_B1 SINE B4 124 222 -2 1 1577 1391 63 40 6 chr5 130070782 130070958 -22466301 + B2_Mm2 SINE B2 1 182 -13 1 1577 383 225 22 0 chr5 130072317 130072406 -22464853 + B4A SINE B4 3 93 -199 1 1577 1236 54 0 0 chr5 130072409 130072556 -22464703 + B1_Mus2 SINE Alu 1 147 0 1 1577 227 216 39 0 chr5 130072653 130072704 -22464555 + PB1 SINE Alu 75 127 0 1 1577 439 266 30 78 chr5 130073512 130073679 -22463580 + RSINE1 SINE B4 2 160 -5 1 1577 189 0 0 0 chr5 130073700 130073721 -22463538 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1577 743 257 65 23 chr5 130075206 130075421 -22461838 + ID_B1 SINE B4 1 224 0 1 1577 211 200 156 62 chr5 130078184 130078248 -22459011 - PB1D9 SINE Alu -1 119 50 1 1577 404 235 71 10 chr5 130078300 130078323 -22458936 - ID_B1 SINE B4 -38 186 164 1 1577 3308 48 0 8 chr5 130078323 130078719 -22458540 - MTA_Mm LTR MaLR 0 396 4 1 1577 404 235 71 10 chr5 130078719 130078794 -22458465 - ID_B1 SINE B4 -61 163 82 1 1577 255 209 58 29 chr5 130078844 130078897 -22458362 + B1_Mur1 SINE Alu 75 129 -20 1 1577 864 220 110 0 chr5 130078897 130079088 -22458171 + B3 SINE B2 1 212 -4 1 1577 255 209 58 29 chr5 130079088 130079103 -22458156 + B1_Mur1 SINE Alu 130 144 -5 1 1577 1175 70 0 0 chr5 130079305 130079463 -22457796 + B2_Mm2 SINE B2 1 158 -37 1 1577 260 70 0 23 chr5 130079464 130079508 -22457751 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 1 1577 1184 50 0 0 chr5 130081164 130081303 -22455956 + B1_Mus1 SINE Alu 4 142 -6 1 1577 366 23 0 0 chr5 130081306 130081349 -22455910 + (TAA)n Simple_repeat Simple_repeat 3 45 0 1 1577 880 143 15 0 chr5 130082060 130082193 -22455066 - B1_Mus1 SINE Alu -13 135 1 1 1577 502 292 0 30 chr5 130082460 130082594 -22454665 - ID_B1 SINE B4 -1 223 94 1 1577 7319 80 25 3 chr5 130082760 130084086 -22453173 + L1_Mus3 LINE L1 5288 6634 -4 1 1577 1249 42 0 0 chr5 130085031 130085175 -22452084 + B1_Mus2 SINE Alu 3 146 -1 1 1577 518 88 25 0 chr5 130085177 130085257 -22452002 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 1 1577 729 251 15 44 chr5 130085359 130085563 -22451696 + B3A SINE B2 1 198 0 1 1577 1244 28 0 0 chr5 130085589 130085730 -22451529 + B1_Mus2 SINE Alu 1 141 -6 1 1577 423 0 0 0 chr5 130085732 130085779 -22451480 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1 1577 356 297 29 66 chr5 130085783 130085920 -22451339 + RSINE1 SINE B4 3 134 -31 1 1577 195 42 0 0 chr5 130086862 130086886 -22450373 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1577 281 295 18 29 chr5 130087507 130087678 -22449581 + GA-rich Low_complexity Low_complexity 1 169 0 1 1577 281 235 32 29 chr5 130087831 130087944 -22449315 - PB1D10 SINE Alu -4 116 3 1 1577 238 236 18 0 chr5 130088063 130088118 -22449141 + B1F1 SINE Alu 1 56 -93 1 1577 301 312 41 10 chr5 130088573 130088670 -22448589 + MTEa LTR MaLR 1 100 -279 1 1577 482 257 0 60 chr5 130088650 130088766 -22448493 + MTE2b LTR MaLR 42 150 -229 1 1577 261 296 121 8 chr5 130089226 130089359 -22447900 + MIRb SINE MIR 77 227 -41 1 1577 211 132 0 26 chr5 130090072 130090111 -22447148 + (CGGAG)n Simple_repeat Simple_repeat 5 42 0 1 1577 629 266 23 17 chr5 130093322 130093494 -22443765 + ID_B1 SINE B4 45 217 -7 1 1577 642 181 61 68 chr5 130093503 130093651 -22443608 + B1_Mur1 SINE Alu 3 149 0 1 1577 1524 129 0 30 chr5 130093693 130093924 -22443335 + URR1A DNA MER1_type 3 226 0 1 1577 475 279 175 22 chr5 130093932 130094232 -22443027 - ORR1D1 LTR MaLR -10 349 1 1 1577 387 0 0 0 chr5 130094275 130094318 -22442941 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1577 423 0 0 0 chr5 130094318 130094364 -22442895 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1577 726 178 0 17 chr5 130094395 130094515 -22442744 - PB1D9 SINE Alu -1 119 2 1 1577 322 311 72 26 chr5 130095149 130095301 -22441958 + MIR SINE MIR 13 171 -91 1 1577 472 198 10 10 chr5 130095646 130095741 -22441518 + B4 SINE B4 1 95 -197 1 1577 565 252 96 9 chr5 130095741 130095934 -22441325 + B3A SINE B2 1 209 -7 1 1577 699 290 19 39 chr5 130095932 130096140 -22441119 + B4 SINE B4 85 288 -4 1 1577 246 306 17 0 chr5 130096170 130096277 -22440982 + MIRm SINE MIR 80 187 -75 1 1577 243 0 0 0 chr5 130098049 130098076 -22439183 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1577 22 0 0 0 chr5 130098096 130098118 -22439141 + AT_rich Low_complexity Low_complexity 1 22 0 1 1577 225 65 0 0 chr5 130098596 130098627 -22438632 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1577 23 0 0 0 chr5 130098647 130098670 -22438589 + AT_rich Low_complexity Low_complexity 1 23 0 1 1577 393 224 121 10 chr5 130098832 130098931 -22438328 + PB1D9 SINE Alu 3 112 -8 1 1577 859 263 19 14 chr5 130098945 130099153 -22438106 + B3 SINE B2 3 211 -5 1 1577 1249 111 33 0 chr5 130099176 130099357 -22437902 - B2_Mm2 SINE B2 -8 187 1 1 1577 22 0 0 0 chr5 130099360 130099382 -22437877 + AT_rich Low_complexity Low_complexity 1 22 0 1 1577 773 189 0 13 chr5 130099530 130099680 -22437579 - B1_Mur4 SINE Alu 0 150 3 1 1577 673 280 55 0 chr5 130099705 130099887 -22437372 + ID_B1 SINE B4 15 206 -18 1 1577 286 216 216 0 chr5 130099887 130099961 -22437298 + B1_Mur2 SINE Alu 45 134 -15 1 1577 506 43 14 0 chr5 130099961 130100030 -22437229 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1577 261 270 25 0 chr5 130101938 130102097 -22435162 + (CACCAT)n Simple_repeat Simple_repeat 3 165 0 2 1577 890 238 42 5 chr5 130103501 130103691 -22433568 - B3A SINE B2 0 198 2 2 1577 1041 205 14 45 chr5 130103696 130103916 -22433343 - B3 SINE B2 -3 213 1 2 1577 185 0 0 39 chr5 130104955 130104981 -22432278 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 1577 1180 37 0 0 chr5 130104981 130105117 -22432142 - B1_Mm SINE Alu -10 137 2 2 1577 189 0 0 0 chr5 130105268 130105289 -22431970 + (CTGGGG)n Simple_repeat Simple_repeat 4 24 0 2 1577 549 0 0 0 chr5 130105377 130105438 -22431821 + (GTTTG)n Simple_repeat Simple_repeat 2 62 0 2 1577 390 260 20 10 chr5 130105438 130105532 -22431727 - PB1D7 SINE Alu -8 112 17 2 1577 450 94 0 0 chr5 130105537 130105601 -22431658 + (TG)n Simple_repeat Simple_repeat 2 65 0 2 1577 234 0 0 0 chr5 130105664 130105690 -22431569 + (TTGG)n Simple_repeat Simple_repeat 3 28 0 2 1577 868 243 57 14 chr5 130105703 130105912 -22431347 - ID_B1 SINE B4 -3 221 4 2 1577 236 284 15 0 chr5 130105922 130105989 -22431270 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 2 1577 402 235 0 58 chr5 130105989 130106179 -22431080 + (TA)n Simple_repeat Simple_repeat 2 180 0 2 1577 498 342 18 24 chr5 130106191 130106356 -22430903 - RSINE1 SINE B4 0 165 2 2 1577 596 268 29 0 chr5 130106359 130106497 -22430762 - B1F2 SINE Alu -1 148 7 2 1577 528 326 5 71 chr5 130106363 130106561 -22430698 - ID_B1 SINE B4 -5 219 35 2 1577 528 252 47 0 chr5 130107035 130107162 -22430097 - B3A SINE B2 -36 162 30 2 1577 485 118 0 26 chr5 130107172 130107250 -22430009 - B1_Mur2 SINE Alu -1 148 73 2 1577 255 273 71 77 chr5 130107254 130107409 -22429850 - RMER15 LTR ERVL -421 154 1 2 1577 242 256 63 13 chr5 130107409 130107488 -22429771 - B1F1 SINE Alu -63 86 4 2 1577 201 147 0 0 chr5 130108326 130108360 -22428899 + (A)n Simple_repeat Simple_repeat 1 34 0 2 1577 414 283 0 29 chr5 130108719 130108821 -22428438 + PB1D10 SINE Alu 11 109 -8 2 1577 608 286 75 27 chr5 130108834 130109021 -22428238 + ID_B1 SINE B4 1 196 -28 2 1577 769 228 135 135 chr5 130109254 130109625 -22427634 - MTE2b LTR MaLR -1 378 5 2 1577 297 0 0 0 chr5 130109638 130109671 -22427588 + (CCA)n Simple_repeat Simple_repeat 1 33 0 2 1577 2248 165 94 102 chr5 130109747 130109849 -22427410 - RLTR11A LTR ERVK 0 528 449 2 1577 1245 48 0 0 chr5 130109849 130109996 -22427263 - B1_Mus2 SINE Alu 0 147 1 2 1577 2248 165 94 102 chr5 130109996 130110425 -22426834 - RLTR11A LTR ERVK -80 448 1 2 1577 680 250 0 19 chr5 130110929 130111084 -22426175 + ID_B1 SINE B4 66 217 -7 2 1577 198 167 0 0 chr5 130111216 130111252 -22426007 + L2c LINE L2 3335 3370 -17 2 1577 189 0 0 0 chr5 130112537 130112558 -22424701 + (TTCC)n Simple_repeat Simple_repeat 3 23 0 2 1577 205 272 149 37 chr5 130113500 130113607 -22423652 - L2b LINE L2 -293 3082 2964 2 1577 409 273 125 7 chr5 130115341 130115485 -22421774 + RSINE1 SINE B4 3 163 -2 2 1577 682 199 73 7 chr5 130115530 130115667 -22421592 + B1_Mur1 SINE Alu 2 147 -2 2 1577 1189 81 0 0 chr5 130115668 130115816 -22421443 + B1_Mus1 SINE Alu 1 148 0 2 1577 921 94 225 95 chr5 130116511 130116711 -22420548 - URR1A DNA MER1_type 0 226 1 2 1577 858 126 0 0 chr5 130117376 130117511 -22419748 + (GGGAGA)n Simple_repeat Simple_repeat 3 137 0 2 1577 987 125 17 6 chr5 130117511 130117688 -22419571 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2 1577 459 0 0 0 chr5 130117689 130117740 -22419519 + (GA)n Simple_repeat Simple_repeat 1 51 0 2 1577 288 292 75 23 chr5 130118168 130118301 -22418958 - RMER15 LTR ERVL -90 485 346 2 1577 366 243 143 9 chr5 130118588 130118700 -22418559 - RSINE1 SINE B4 -35 130 4 2 1577 331 297 79 14 chr5 130118752 130118892 -22418367 - RSINE1 SINE B4 -14 151 3 2 1577 967 230 96 19 chr5 130119021 130119291 -22417968 - B4 SINE B4 0 292 2 2 1577 550 237 0 9 chr5 130119303 130119418 -22417841 - PB1D7 SINE Alu -6 114 1 2 1577 615 198 46 31 chr5 130119500 130119630 -22417629 + B1F SINE Alu 17 148 -1 2 1577 1104 221 10 0 chr5 130119665 130119873 -22417386 + B3 SINE B2 2 211 -5 2 1577 1126 183 109 0 chr5 130120183 130120385 -22416874 + URR1A DNA MER1_type 1 224 -2 2 1577 260 106 58 23 chr5 130120508 130120595 -22416664 + (CA)n Simple_repeat Simple_repeat 2 91 0 2 1577 346 270 113 28 chr5 130120732 130120873 -22416386 - HAL1-3A_ME LINE L1 -426 2432 2280 2 1577 420 258 41 24 chr5 130120969 130121092 -22416167 - ID_B1 SINE B4 -1 223 99 2 1577 237 214 42 42 chr5 130121158 130121245 -22416014 - PB1D10 SINE Alu 0 149 52 2 1577 270 216 0 149 chr5 130121369 130121456 -22415803 + ID_B1 SINE B4 75 148 -76 2 1577 321 193 19 14 chr5 130121400 130121479 -22415780 + PB1D7 SINE Alu 13 92 -55 2 1577 991 106 28 7 chr5 130121490 130121632 -22415627 + B1_Mus1 SINE Alu 4 148 0 2 1577 234 328 0 0 chr5 130121645 130121712 -22415547 + B3A SINE B2 1 67 -131 2 1577 398 298 63 16 chr5 130121846 130121972 -22415287 + B3 SINE B2 81 212 -4 2 1577 2881 58 81 5 chr5 130122162 130122544 -22414715 - RLTR10A LTR ERVK 0 411 1 2 1577 269 320 0 13 chr5 130122846 130122922 -22414337 + B1F SINE Alu 62 136 -13 2 1577 505 268 62 56 chr5 130122957 130123119 -22414140 - RSINE1 SINE B4 0 165 3 2 1577 3896 76 4 6 chr5 130123143 130123658 -22413601 - L1_Mus3 LINE L1 -2 6636 6123 2 1577 360 241 179 0 chr5 130123709 130123821 -22413438 + RSINE1 SINE B4 3 134 -31 2 1577 3215 163 96 83 chr5 130123850 130124640 -22412619 + RLTR14-int LTR ERV1 488 1287 -4030 2 1577 2338 140 20 56 chr5 130124733 130124978 -22412281 + RLTR14-int LTR ERV1 1295 1535 -3782 2 1577 576 214 251 27 chr5 130124978 130125161 -22412098 + URR1B DNA MER1_type 2 225 0 2 1577 2338 197 29 65 chr5 130125161 130125386 -22411873 + RLTR14-int LTR ERV1 1536 1688 -3629 2 1577 1219 89 102 19 chr5 130125386 130125591 -22411668 + URR1A DNA MER1_type 5 226 0 2 1577 11436 203 47 66 chr5 130125591 130126658 -22410601 + RLTR14-int LTR ERV1 1746 2593 -2724 2 1577 1336 211 25 16 chr5 130126658 130126975 -22410284 + RLTR46 LTR ERVK 1 320 0 2 1577 11436 147 51 56 chr5 130126975 130127608 -22409651 + RLTR14-int LTR ERV1 2594 3177 -2140 2 1577 1652 42 0 0 chr5 130127608 130127800 -22409459 - B2_Mm1a SINE B2 0 193 2 2 1577 11436 147 51 56 chr5 130127800 130128813 -22408446 + RLTR14-int LTR ERV1 3178 4236 -1081 2 1577 6312 140 28 42 chr5 130129785 130130879 -22406380 + RLTR14-int LTR ERV1 4231 5309 -8 2 1577 2217 151 19 8 chr5 130130887 130131260 -22405999 + RLTR14 LTR ERV1 1 377 -5 2 1577 2890 68 39 3 chr5 130131260 130131646 -22405613 - MTB LTR MaLR 0 400 1 2 1577 6141 110 111 52 chr5 130132199 130132978 -22404281 + RLTR13D3 LTR ERVK 1 847 -267 2 1577 1396 66 33 5 chr5 130132978 130133162 -22404097 - B2_Mm1t SINE B2 -3 190 2 2 1577 6141 110 111 52 chr5 130133162 130133434 -22403825 + RLTR13D3 LTR ERVK 848 1114 0 2 1577 1125 158 37 0 chr5 130133790 130133980 -22403279 + URR1B DNA MER1_type 1 197 -28 2 1577 372 246 84 38 chr5 130134003 130134134 -22403125 - B1F SINE Alu -12 137 1 2 1577 990 231 14 5 chr5 130134150 130134363 -22402896 - B3 SINE B2 -1 215 1 2 1577 766 161 31 0 chr5 130135307 130135437 -22401822 - B1_Mur4 SINE Alu -16 134 1 2 1577 227 208 0 0 chr5 130135452 130135500 -22401759 + T-rich Low_complexity Low_complexity 1 48 0 2 1577 1160 75 7 0 chr5 130135502 130135648 -22401611 - B1_Mus1 SINE Alu 0 148 2 2 1577 1810 188 50 45 chr5 130135922 130136042 -22401217 + MTC LTR MaLR 1 114 -307 2 1577 1057 141 48 16 chr5 130136042 130136230 -22401029 - B2_Mm2 SINE B2 0 195 2 2 1577 1810 188 50 45 chr5 130136230 130136528 -22400731 + MTC LTR MaLR 115 421 0 2 1577 428 212 170 10 chr5 130136933 130137033 -22400226 - B1F SINE Alu 0 149 34 2 1577 404 219 140 19 chr5 130137033 130137140 -22400119 - PB1D7 SINE Alu 0 120 1 2 1577 336 275 99 0 chr5 130137212 130137303 -22399956 + PB1D10 SINE Alu 12 111 -6 2 1577 1262 106 11 11 chr5 130137306 130137497 -22399762 + B2_Mm2 SINE B2 3 193 -2 2 1577 553 233 78 24 chr5 130137516 130137683 -22399576 + ORR1D2 LTR MaLR 139 314 -56 2 1577 333 301 11 38 chr5 130138433 130138616 -22398643 + (CACAC)n Simple_repeat Simple_repeat 2 179 0 2 1577 320 310 6 40 chr5 130138629 130138980 -22398279 + (CACAC)n Simple_repeat Simple_repeat 1 338 0 2 1577 285 312 0 43 chr5 130139056 130139240 -22398019 + (CACAC)n Simple_repeat Simple_repeat 2 177 0 2 1577 1597 121 258 6 chr5 130139635 130139965 -22397294 - MTC LTR MaLR -8 413 1 2 1577 671 188 25 56 chr5 130139966 130140163 -22397096 - MTC-int LTR MaLR -1 1257 1067 2 1577 1401 87 5 0 chr5 130140494 130140679 -22396580 + B2_Mm1a SINE B2 2 187 -6 2 1577 1578 48 0 0 chr5 130140793 130140982 -22396277 + B2_Mm1a SINE B2 2 190 -3 2 1577 3265 91 32 17 chr5 130142698 130143166 -22394093 - MT2C_Mm LTR ERVL 0 475 1 2 1577 1183 98 35 6 chr5 130144197 130144371 -22392888 + B2_Mm1a SINE B2 1 179 -14 2 1577 1384 77 38 0 chr5 130144380 130144563 -22392696 + B2_Mm2 SINE B2 2 191 -4 2 1577 3449 18 0 0 chr5 130144563 130144952 -22392307 - L1Md_T LINE L1 -291 5592 5204 2 1577 7425 28 0 2 chr5 130144952 130145808 -22391451 + L1Md_T LINE L1 5729 6582 0 2 1577 258 154 191 71 chr5 130146762 130146775 -22390484 + MT2B LTR ERVL 155 177 -424 2 1577 375 155 286 0 chr5 130146775 130146859 -22390400 + B1_Mus2 SINE Alu 1 108 -39 2 1577 768 132 8 0 chr5 130147048 130147169 -22390090 - B1_Mus2 SINE Alu 0 147 26 2 1577 302 182 0 18 chr5 130147517 130147573 -22389686 + B1_Mus2 SINE Alu 93 147 0 2 1577 3076 119 88 18 chr5 130147573 130148060 -22389199 - MTC-int LTR MaLR -157 1101 587 2 1577 3641 35 28 0 chr5 130148060 130148484 -22388775 + RLTR10C LTR ERVK 1 436 0 2 1577 3076 150 150 23 chr5 130148484 130148656 -22388603 - MTC-int LTR MaLR -672 586 509 2 1577 314 131 65 16 chr5 130148637 130148699 -22388560 - MTC-int LTR MaLR -1188 70 6 2 1577 2220 152 56 8 chr5 130148714 130149104 -22388155 - MTC LTR MaLR -12 409 1 2 1577 738 214 35 97 chr5 130149219 130149303 -22387956 + MTC LTR MaLR 154 231 -165 2 1577 1194 97 38 49 chr5 130149303 130149488 -22387771 + B2_Mm1t SINE B2 3 185 -8 2 1577 270 0 0 0 chr5 130149489 130149519 -22387740 + (GA)n Simple_repeat Simple_repeat 1 30 0 2 1577 1086 133 7 2 chr5 130149519 130149691 -22387568 + MTC LTR MaLR 232 421 0 2 1577 2936 9 0 0 chr5 130150138 130150460 -22386799 + RLTRETN_Mm LTR ERVK 1 322 0 2 197 43344 14 1 3 chr5 130150460 130155315 -22381944 + MMETn-int LTR ERVK 1 4844 0 2 1578 2919 16 0 0 chr5 130155315 130155637 -22381622 + RLTRETN_Mm LTR ERVK 1 322 0 2 1578 1070 92 21 0 chr5 130156416 130156557 -22380702 + B1_Mur4 SINE Alu 1 144 -6 2 1578 2118 110 63 15 chr5 130157107 130157439 -22379820 - ORR1B1 LTR MaLR -8 386 39 3 1578 2885 84 29 17 chr5 130157463 130157872 -22379387 - L1_Mus3 LINE L1 0 6638 6225 3 1578 801 306 91 102 chr5 130157994 130158500 -22378759 + MTE-int LTR MaLR 22 569 -1011 3 1578 1066 86 0 0 chr5 130158500 130158639 -22378620 + B1_Mus1 SINE Alu 2 140 -8 3 1578 495 0 0 0 chr5 130158640 130158695 -22378564 + (GA)n Simple_repeat Simple_repeat 1 55 0 3 1578 600 306 91 102 chr5 130158695 130158899 -22378360 + MTE-int LTR MaLR 498 724 -646 3 1578 1183 186 174 6 chr5 130158909 130159235 -22378024 + RLTR40 LTR ERVK 1 381 -436 3 1578 1022 204 146 21 chr5 130159265 130159505 -22377754 - MTD LTR MaLR -148 271 2 3 1578 598 256 36 12 chr5 130159514 130159680 -22377579 - RMER15-int LTR ERVL -4620 379 210 3 1578 468 0 0 0 chr5 130159741 130159793 -22377466 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1578 258 267 97 19 chr5 130159919 130160022 -22377237 - RMER15 LTR ERVL -57 518 408 3 1578 691 167 82 15 chr5 130161402 130161536 -22375723 + B1_Mur3 SINE Alu 2 144 -5 3 1578 1308 91 11 0 chr5 130161684 130161860 -22375399 + B2_Mm1t SINE B2 2 179 -14 3 1578 527 71 305 42 chr5 130161907 130162025 -22375234 + B2_Mm2 SINE B2 47 195 0 3 1578 369 236 50 50 chr5 130162389 130162536 -22374723 - MMSAT4 Satellite Satellite -75 147 1 3 1578 332 266 61 61 chr5 130162651 130162956 -22374303 - MMSAT4 Satellite Satellite -1 305 1 3 1578 241 278 57 57 chr5 130163170 130163292 -22373967 - MMSAT4 Satellite Satellite -16 152 31 3 1578 237 294 48 48 chr5 130163409 130163534 -22373725 - MMSAT4 Satellite Satellite -3 165 41 3 1578 306 227 63 63 chr5 130163660 130163787 -22373472 - MMSAT4 Satellite Satellite -2 166 40 3 1578 435 252 59 30 chr5 130164442 130164577 -22372682 + ID_B1 SINE B4 82 220 -4 3 1578 182 37 37 0 chr5 130164584 130164611 -22372648 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 3 1578 1895 110 32 78 chr5 130164622 130164967 -22372292 - ORR1A4 LTR MaLR 0 329 1 3 1578 296 250 45 36 chr5 130165355 130165467 -22371792 - MMSAT4 Satellite Satellite -15 153 41 3 1578 239 0 0 31 chr5 130165602 130165634 -22371625 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 3 1578 336 257 14 0 chr5 130166149 130166223 -22371036 - B3A SINE B2 -121 77 3 3 1578 603 220 7 50 chr5 130166432 130166571 -22370688 + B3 SINE B2 2 134 -82 3 1578 486 101 0 37 chr5 130167030 130167112 -22370147 - URR1B DNA MER1_type 0 225 147 3 1578 252 320 10 10 chr5 130167167 130167265 -22369994 - MurSatRep1 Unknown Unknown -1409 728 631 3 1578 980 268 128 53 chr5 130167304 130167812 -22369447 + L1_Mur3 LINE L1 5246 5791 -89 3 1578 847 191 13 0 chr5 130168019 130168176 -22369083 - MTD LTR MaLR -248 171 13 3 1578 562 260 0 33 chr5 130168270 130168421 -22368838 + RSINE1 SINE B4 20 165 0 3 1578 298 229 74 28 chr5 130168506 130168614 -22368645 + L1MC LINE L1 4638 4750 -1396 3 1578 249 191 0 0 chr5 130169602 130169644 -22367615 + B2_Mm2 SINE B2 1 42 -153 3 1578 334 166 99 62 chr5 130169924 130170024 -22367235 + RLTR13D3 LTR ERVK 889 1072 -42 3 1578 491 306 64 20 chr5 130170260 130170463 -22366796 + B4A SINE B4 68 279 -13 3 1578 397 317 33 8 chr5 130170832 130170953 -22366306 + B1F1 SINE Alu 13 136 -13 3 1578 332 268 12 0 chr5 130171026 130171108 -22366151 + ID2 SINE ID 1 83 0 3 1578 945 138 191 0 chr5 130171520 130171709 -22365550 - URR1B DNA MER1_type 0 225 1 3 1578 426 39 0 0 chr5 130171845 130171897 -22365362 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1578 2223 228 73 23 chr5 130171965 130172568 -22364691 + Lx9 LINE L1 6525 7157 -487 3 1578 518 274 91 19 chr5 130172583 130172791 -22364468 + Lx9 LINE L1 7250 7472 -172 3 1578 22 0 0 0 chr5 130172859 130172881 -22364378 + AT_rich Low_complexity Low_complexity 1 22 0 3 1578 554 214 17 17 chr5 130172916 130173035 -22364224 + B1_Mur2 SINE Alu 2 120 -29 3 1578 2148 152 52 17 chr5 130173189 130173591 -22363668 - MTC LTR MaLR -5 416 1 3 1578 1346 273 20 73 chr5 130173602 130174056 -22363203 - MT2A LTR ERVL -103 430 1 3 1578 344 289 66 0 chr5 130174284 130174405 -22362854 - B1F1 SINE Alu -6 143 15 3 1578 180 111 0 0 chr5 130175361 130175388 -22361871 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1578 363 33 0 47 chr5 130176401 130176465 -22360794 + (TTTTTG)n Simple_repeat Simple_repeat 2 62 0 3 1578 189 0 0 0 chr5 130176623 130176644 -22360615 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 3 1578 755 164 39 0 chr5 130176646 130176774 -22360485 - B1_Mus2 SINE Alu -14 133 1 3 1578 1242 91 21 0 chr5 130176914 130177101 -22360158 - MTC LTR MaLR -8 413 223 3 1578 280 339 16 16 chr5 130177477 130177600 -22359659 - MurSatRep1 Unknown Unknown -1409 728 606 3 1578 312 48 0 0 chr5 130177601 130177643 -22359616 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1578 389 352 40 36 chr5 130177690 130177914 -22359345 + RMER15 LTR ERVL 337 561 -14 3 1578 1173 75 0 13 chr5 130178449 130178598 -22358661 + B1_Mus2 SINE Alu 1 147 0 3 1578 2216 92 3 43 chr5 130179324 130179626 -22357633 + ORR1A1 LTR MaLR 1 301 -45 3 1578 1200 43 0 0 chr5 130179626 130179766 -22357493 + B1_Mm SINE Alu 1 140 -7 3 1578 190 0 67 0 chr5 130179766 130179796 -22357463 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 1578 2216 92 3 43 chr5 130179796 130179844 -22357415 + ORR1A1 LTR MaLR 302 337 -9 3 1578 1866 54 4 0 chr5 130180495 130180756 -22356503 + RLTR22_Mus LTR ERVK 551 812 -996 3 1578 906 320 81 33 chr5 130181259 130181297 -22355962 + MTE-int LTR MaLR 1042 1077 -503 3 1578 349 141 0 45 chr5 130181297 130181364 -22355895 + L1Md_F2 LINE L1 6507 6570 -12 3 1578 906 320 81 33 chr5 130181364 130181807 -22355452 + MTE-int LTR MaLR 1078 1546 -34 3 1578 440 353 133 13 chr5 130181793 130182109 -22355150 + ORR1E LTR MaLR 6 359 0 3 1578 2515 161 26 18 chr5 130182622 130183077 -22354182 + RMER6B LTR ERVK 1 459 -2 3 1578 1253 164 33 115 chr5 130183080 130183384 -22353875 + MYSERV6-int LTR ERVK 10 288 -8671 3 1578 235 170 43 0 chr5 130183400 130183447 -22353812 + RMER6B LTR ERVK 1 49 -412 3 1578 19047 130 31 20 chr5 130183517 130184894 -22352365 + MYSERV6-int LTR ERVK 337 1697 -7262 3 1578 1599 50 0 0 chr5 130184894 130185092 -22352167 + L1_Mus1 LINE L1 6369 6566 -1 3 1578 19047 124 45 15 chr5 130185092 130187538 -22349721 + MYSERV6-int LTR ERVK 1698 4250 -4709 3 1578 2915 127 124 111 chr5 130187532 130187930 -22349329 + MYSERV6-int LTR ERVK 5880 6325 -2634 3 1578 225 319 28 0 chr5 130187930 130188002 -22349257 + PB1D7 SINE Alu 1 74 -46 3 1578 2915 127 124 111 chr5 130188002 130188265 -22348994 + MYSERV6-int LTR ERVK 6326 6622 -2337 3 1578 685 199 0 29 chr5 130188289 130188429 -22348830 + RMER12B LTR ERVK 1 136 -1268 3 1578 2028 121 16 10 chr5 130188429 130188737 -22348522 + MYSERV6-int LTR ERVK 7455 7764 -1195 3 1578 2055 169 85 12 chr5 130188740 130189164 -22348095 + RMER6B LTR ERVK 1 455 -6 3 1578 32 26 0 0 chr5 130189836 130189875 -22347384 + AT_rich Low_complexity Low_complexity 1 39 0 3 1578 439 240 39 0 chr5 130190053 130190157 -22347102 - RSINE1 SINE B4 -55 110 3 3 1578 261 322 124 32 chr5 130190332 130190550 -22346709 + MLT-int LTR MaLR 423 660 -1075 3 1578 441 337 186 39 chr5 130190691 130190946 -22346313 + MLT-int LTR MaLR 867 1169 -566 3 1578 1587 138 86 128 chr5 130190946 130191013 -22346246 + ORR1B2 LTR MaLR 1 59 -308 3 1578 1139 62 14 0 chr5 130191013 130191157 -22346102 + B1_Mm SINE Alu 2 147 0 3 1578 1587 138 86 128 chr5 130191157 130191472 -22345787 + ORR1B2 LTR MaLR 60 367 0 3 1578 441 337 186 39 chr5 130191472 130191528 -22345731 + MLT-int LTR MaLR 1170 1224 -511 3 1578 245 275 122 40 chr5 130191979 130192127 -22345132 + RSINE1 SINE B4 4 163 -2 3 1578 480 231 15 23 chr5 130192304 130192437 -22344822 - ID_B1 SINE B4 -9 215 84 3 1578 848 28 0 0 chr5 130192330 130192438 -22344821 - B1_Mus1 SINE Alu -39 109 2 3 1578 225 0 0 0 chr5 130192529 130192554 -22344705 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 3 1578 709 241 15 0 chr5 130192564 130192701 -22344558 - B1_Mur1 SINE Alu -8 141 3 3 1578 1075 132 107 0 chr5 130192738 130192935 -22344324 - Lx3C LINE L1 -2 6974 6757 3 1578 615 161 139 7 chr5 130193074 130193218 -22344041 + URR1A DNA MER1_type 15 177 -49 3 1578 954 71 0 0 chr5 130193334 130193461 -22343798 + B1_Mus1 SINE Alu 8 134 -14 3 1578 1173 81 0 0 chr5 130193930 130194078 -22343181 - B1_Mus1 SINE Alu 0 148 1 3 1578 2739 97 270 5 chr5 130194078 130194523 -22342736 + RMER2 LTR ERV1 4 566 -1 3 1578 287 148 0 0 chr5 130194529 130194583 -22342676 + URR1A DNA MER1_type 172 225 -1 3 1578 818 286 18 67 chr5 130194569 130194854 -22342405 + B4A SINE B4 4 274 -18 3 1578 403 258 75 0 chr5 130195299 130195392 -22341867 - B3 SINE B2 -115 101 2 3 1578 329 0 24 0 chr5 130195737 130195778 -22341481 + (TC)n Simple_repeat Simple_repeat 1 42 0 3 1578 315 0 0 0 chr5 130195778 130195812 -22341447 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1578 597 199 14 68 chr5 130195873 130196048 -22341211 + MTD LTR MaLR 1 194 -225 3 1578 1470 142 0 4 chr5 130196246 130196473 -22340786 + URR1A DNA MER1_type 1 226 0 3 1578 564 147 267 0 chr5 130197157 130197273 -22339986 - B1_Mus2 SINE Alu 0 147 1 3 1578 657 172 159 0 chr5 130197282 130197433 -22339826 - B2_Mm2 SINE B2 -8 187 13 3 1578 23 92 0 0 chr5 130197450 130197515 -22339744 + AT_rich Low_complexity Low_complexity 1 65 0 3 1578 644 229 0 0 chr5 130197515 130197633 -22339626 + B1_Mur3 SINE Alu 1 118 -31 3 1578 920 272 88 23 chr5 130197659 130197922 -22339337 + B4 SINE B4 2 281 -11 3 1578 273 57 0 0 chr5 130197927 130197962 -22339297 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1578 501 211 75 16 chr5 130198213 130198372 -22338887 - B3 SINE B2 -1 194 33 3 1578 765 185 0 0 chr5 130198372 130198502 -22338757 + Lx9 LINE L1 6963 7092 -552 3 1578 397 255 29 48 chr5 130198511 130198614 -22338645 + ID_B1 SINE B4 108 208 -16 3 1578 252 179 25 13 chr5 130198630 130198709 -22338550 + GA-rich Low_complexity Low_complexity 4 83 0 3 1578 234 0 47 47 chr5 130199018 130199061 -22338198 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 3 1578 356 184 49 37 chr5 130199890 130200054 -22337205 + (TTATA)n Simple_repeat Simple_repeat 5 170 0 3 1578 279 233 162 2 chr5 130200735 130200822 -22336437 + PB1D10 SINE Alu 7 102 -47 3 1578 236 161 18 18 chr5 130201140 130201197 -22336062 + T-rich Low_complexity Low_complexity 2 58 0 4 1578 568 199 31 38 chr5 130201201 130201347 -22335912 - B1F SINE Alu 0 149 5 4 1578 499 208 0 0 chr5 130201564 130201660 -22335599 + ID_B1 SINE B4 129 224 0 4 1578 458 254 25 17 chr5 130202359 130202479 -22334780 + B1F SINE Alu 23 143 -6 4 1578 261 180 0 0 chr5 130202635 130202685 -22334574 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 4 1578 769 179 211 15 chr5 130202720 130202924 -22334335 + MTD LTR MaLR 176 419 0 4 1578 250 363 35 0 chr5 130202964 130203077 -22334182 + MLT1C LTR MaLR 333 449 -18 4 1578 838 203 0 13 chr5 130203362 130203512 -22333747 + B1_Mur1 SINE Alu 1 148 -1 4 1578 21 0 0 0 chr5 130203579 130203600 -22333659 + AT_rich Low_complexity Low_complexity 1 21 0 4 1578 663 137 8 17 chr5 130203880 130203999 -22333260 + ORR1C1 LTR MaLR 61 178 -200 4 1578 367 103 29 0 chr5 130204024 130204054 -22333205 + (TC)n Simple_repeat Simple_repeat 1 32 0 4 1578 669 25 0 0 chr5 130204054 130204133 -22333126 + (TTC)n Simple_repeat Simple_repeat 3 81 0 4 1578 367 103 29 0 chr5 130204133 130204170 -22333089 + (TC)n Simple_repeat Simple_repeat 2 38 0 4 1578 1310 146 0 5 chr5 130204170 130204384 -22332875 + ORR1C1 LTR MaLR 166 378 0 4 1578 257 250 31 0 chr5 130204384 130204436 -22332823 - PB1D9 SINE Alu -52 68 15 4 1578 1144 89 0 0 chr5 130204437 130204583 -22332676 + B1_Mus1 SINE Alu 3 148 0 4 1578 357 24 0 0 chr5 130204653 130204695 -22332564 + (TA)n Simple_repeat Simple_repeat 1 42 0 4 1578 342 0 0 0 chr5 130204695 130204732 -22332527 + (GA)n Simple_repeat Simple_repeat 2 39 0 4 1578 365 312 62 0 chr5 130205306 130205418 -22331841 + ID_B1 SINE B4 87 205 -19 4 1578 782 187 7 14 chr5 130205439 130205580 -22331679 + B1_Mus2 SINE Alu 3 142 -5 4 1578 577 220 0 33 chr5 130205609 130205731 -22331528 + B1_Mus2 SINE Alu 1 118 -29 4 1578 672 190 98 72 chr5 130205793 130205986 -22331273 + B3A SINE B2 1 198 0 4 1578 2403 142 35 18 chr5 130206453 130206905 -22330354 + RLTR20D LTR ERVK 1 460 -108 4 1578 771 180 17 3 chr5 130207036 130207358 -22329901 + CT-rich Low_complexity Low_complexity 1 326 0 4 1578 609 113 18 36 chr5 130207359 130207469 -22329790 - B1_Mur2 SINE Alu 0 149 42 4 1578 180 261 0 0 chr5 130207525 130207617 -22329642 + CT-rich Low_complexity Low_complexity 1 92 0 4 1578 310 138 17 33 chr5 130207617 130207677 -22329582 - PB1D9 SINE Alu -61 59 1 4 1578 426 171 11 68 chr5 130208006 130208094 -22329165 + B1_Mus2 SINE Alu 2 84 -63 4 1578 270 306 39 31 chr5 130208405 130208533 -22328726 + L1M2 LINE L1 1646 1774 -5075 4 1578 279 259 0 0 chr5 130208577 130208658 -22328601 + L1M2 LINE L1 3955 4035 -2810 4 1578 451 174 297 25 chr5 130208971 130209089 -22328170 + B1_Mur4 SINE Alu 1 150 0 4 1578 413 264 9 0 chr5 130209448 130209558 -22327701 + L1M2 LINE L1 5839 5949 -896 4 1578 276 30 0 0 chr5 130209846 130209879 -22327380 + (CA)n Simple_repeat Simple_repeat 1 33 0 4 1578 570 250 24 142 chr5 130211052 130211257 -22326002 - B3 SINE B2 -6 210 30 4 1578 595 164 0 0 chr5 130211259 130211363 -22325896 - B1_Mus2 SINE Alu -1 146 43 4 1578 213 39 0 0 chr5 130211363 130211389 -22325870 + (CCTAA)n Simple_repeat Simple_repeat 1 26 0 4 1578 3486 25 2 0 chr5 130211389 130211784 -22325475 - MTA_Mm LTR MaLR 0 396 1 4 1578 9506 26 2 1 chr5 130211784 130212881 -22324378 - MTA_Mm-int LTR MaLR 0 1098 1 4 1578 3486 25 2 0 chr5 130212881 130213276 -22323983 - MTA_Mm LTR MaLR 0 396 1 4 1578 2081 104 82 27 chr5 130213279 130213645 -22323614 - MTC LTR MaLR -35 386 1 4 1578 4002 124 77 165 chr5 130213645 130213971 -22323288 - MTC-int LTR MaLR 0 1258 1058 4 1578 195 42 0 0 chr5 130213971 130213995 -22323264 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1578 4002 124 77 165 chr5 130213995 130214728 -22322531 - MTC-int LTR MaLR -201 1057 292 4 1578 1420 188 124 27 chr5 130214724 130215062 -22322197 - MTB_Mm LTR MaLR -35 372 2 4 1578 660 215 24 123 chr5 130215467 130215679 -22321580 + B3A SINE B2 1 191 -7 4 1578 237 264 126 45 chr5 130215719 130215824 -22321435 + Charlie1a DNA MER1_type 52 165 -1290 4 1578 862 148 0 0 chr5 130215824 130215966 -22321293 + B1_Mus1 SINE Alu 2 143 -5 4 1578 211 260 0 20 chr5 130216097 130216148 -22321111 + G-rich Low_complexity Low_complexity 128 177 0 4 1578 265 288 0 48 chr5 130216849 130216933 -22320326 + MTE2b LTR MaLR 19 98 -281 4 1578 535 298 173 4 chr5 130216990 130217216 -22320043 + MTE2b LTR MaLR 99 362 -17 4 1578 676 290 89 12 chr5 130217233 130217491 -22319768 + MTE2b-int LTR MaLR 1 278 -1302 4 1578 367 272 361 65 chr5 130217488 130217774 -22319485 - RMER21B LTR ERV1 -124 718 348 4 1578 872 293 96 14 chr5 130217792 130218155 -22319104 + MTE2b-int LTR MaLR 260 652 -928 4 1578 714 246 28 8 chr5 130218161 130218355 -22318904 + ID_B1 SINE B4 7 205 -19 4 1578 222 62 0 0 chr5 130218356 130218388 -22318871 + (TTGG)n Simple_repeat Simple_repeat 3 34 0 4 1578 349 200 0 13 chr5 130218415 130218491 -22318768 - B1_Mus2 SINE Alu -40 107 33 4 1578 202 0 59 29 chr5 130218751 130218785 -22318474 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 4 1578 425 239 28 0 chr5 130218803 130218912 -22318347 + B3 SINE B2 98 209 -7 4 1578 859 202 21 58 chr5 130218956 130219145 -22318114 - B3A SINE B2 -15 183 2 4 1578 296 215 30 12 chr5 130219560 130219725 -22317534 + (TA)n Simple_repeat Simple_repeat 2 169 0 4 1578 2264 75 3 0 chr5 130219792 130220110 -22317149 - ORR1A2 LTR MaLR -8 319 1 4 1578 401 36 0 18 chr5 130220110 130220166 -22317093 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1578 427 333 22 0 chr5 130220171 130220306 -22316953 - RSINE1 SINE B4 -23 142 5 4 1578 186 103 0 0 chr5 130220330 130220359 -22316900 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1578 490 220 232 16 chr5 130220675 130220869 -22316390 - L1MA6 LINE L1 -6 6294 6059 4 1578 1068 87 0 0 chr5 130220934 130221083 -22316176 + (GGAAA)n Simple_repeat Simple_repeat 2 150 0 4 1578 630 179 26 0 chr5 130222302 130222419 -22314840 - B3 SINE B2 -95 121 2 4 1578 234 267 55 55 chr5 130222419 130222507 -22314752 + B1F1 SINE Alu 33 120 0 4 1578 1094 138 202 0 chr5 130222797 130222985 -22314274 + URR1A DNA MER1_type 1 226 0 4 1578 706 114 0 19 chr5 130223370 130223477 -22313782 - B1_Mur2 SINE Alu -1 148 44 4 1578 235 270 104 73 chr5 130223406 130223502 -22313757 - MT2B LTR ERVL -337 264 166 4 1578 333 0 0 0 chr5 130223691 130223728 -22313531 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1578 268 281 21 63 chr5 130224407 130224502 -22312757 - RSINE1 SINE B4 -6 159 69 4 1578 798 138 28 35 chr5 130224577 130224720 -22312539 - B1_Mus1 SINE Alu 0 148 7 4 1578 187 304 125 12 chr5 130224845 130224925 -22312334 + MIR SINE MIR 42 130 -78 4 1578 252 0 0 0 chr5 130225024 130225052 -22312207 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 4 1578 214 211 111 37 chr5 130225143 130225177 -22312082 + B3 SINE B2 1 34 -182 4 1578 4361 107 66 0 chr5 130225177 130225811 -22311448 - RLTR33 LTR ERVK -2 676 1 4 1578 214 211 111 37 chr5 130225811 130225830 -22311429 + B3 SINE B2 35 58 -158 4 1578 1239 51 0 25 chr5 130225921 130226082 -22311177 + B2_Mm2 SINE B2 2 158 -37 4 1578 785 226 55 22 chr5 130226156 130226337 -22310922 + B3 SINE B2 27 213 -3 4 1578 839 168 0 22 chr5 130226555 130226689 -22310570 + B1_Mus1 SINE Alu 3 133 -15 4 1578 297 245 0 0 chr5 130227094 130227147 -22310112 + ID2 SINE ID 2 54 -29 4 1578 259 237 0 78 chr5 130227186 130227250 -22310009 + RSINE1 SINE B4 35 93 -72 4 1578 34 42 0 0 chr5 130227254 130227302 -22309957 + AT_rich Low_complexity Low_complexity 1 48 0 4 1578 507 110 216 20 chr5 130227318 130227415 -22309844 + B1_Mur1 SINE Alu 5 121 -28 4 1578 313 133 0 0 chr5 130227415 130227460 -22309799 - URR1B DNA MER1_type -1 224 180 4 1578 269 257 0 67 chr5 130227561 130227636 -22309623 - URR1B DNA MER1_type -154 71 2 4 1578 254 132 0 0 chr5 130228070 130228108 -22309151 + B2_Mm2 SINE B2 1 38 -157 4 1578 388 236 53 59 chr5 130228312 130228498 -22308761 + RLTR13D3 LTR ERVK 793 1072 -42 4 1578 1404 76 27 0 chr5 130228575 130228760 -22308499 - B2_Mm2 SINE B2 -5 190 1 4 1578 1189 125 16 21 chr5 130228769 130228957 -22308302 - B2_Mm2 SINE B2 -7 188 2 4 1578 248 250 165 12 chr5 130228958 130229043 -22308216 + PB1D10 SINE Alu 13 110 -7 4 1578 287 324 0 14 chr5 130229045 130229117 -22308142 + ID4_ SINE ID 3 73 -10 4 1578 225 373 78 16 chr5 130229283 130229311 -22307948 + B4 SINE B4 57 192 -100 4 1578 390 310 30 0 chr5 130229311 130229411 -22307848 + B1F2 SINE Alu 1 103 -46 4 1578 236 299 78 0 chr5 130229841 130229918 -22307341 + PB1D7 SINE Alu 27 109 -11 4 1578 894 117 172 32 chr5 130230157 130230343 -22306916 + B3 SINE B2 1 212 -4 4 1578 459 152 0 25 chr5 130230612 130230693 -22306566 - URR1B DNA MER1_type 0 225 147 4 1578 34 84 0 0 chr5 130231115 130231198 -22306061 + GC_rich Low_complexity Low_complexity 1 83 0 4 1578 180 0 0 0 chr5 130231473 130231493 -22305766 + (A)n Simple_repeat Simple_repeat 1 20 0 4 1578 990 180 60 5 chr5 130231716 130231917 -22305342 - B3 SINE B2 -4 212 1 4 1578 495 0 0 0 chr5 130231917 130231972 -22305287 + (TATG)n Simple_repeat Simple_repeat 2 56 0 4 1578 410 228 0 52 chr5 130231972 130232069 -22305190 - PB1D10 SINE Alu -9 108 17 4 1578 21 36 0 0 chr5 130232104 130232132 -22305127 + AT_rich Low_complexity Low_complexity 1 28 0 4 1578 460 283 0 0 chr5 130232165 130232257 -22305002 - RSINE1 SINE B4 -72 93 2 4 1578 813 235 10 24 chr5 130232282 130232487 -22304772 - B3 SINE B2 -11 205 4 4 1578 417 170 183 39 chr5 130233229 130233333 -22303926 - B1_Mur3 SINE Alu -30 119 1 4 1578 243 206 28 56 chr5 130233275 130233347 -22303912 - B4 SINE B4 -151 141 72 4 1578 308 342 119 32 chr5 130233355 130233666 -22303593 - L2 LINE L2 -1104 2315 1978 4 1578 935 169 109 16 chr5 130233716 130233908 -22303351 + URR1A DNA MER1_type 15 224 -2 4 1578 189 0 0 0 chr5 130234255 130234276 -22302983 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1578 669 206 30 0 chr5 130234549 130234680 -22302579 - B1_Mur1 SINE Alu -7 142 8 4 1578 870 160 249 0 chr5 130235035 130235216 -22302043 + URR1A DNA MER1_type 1 226 0 5 1578 197 340 75 37 chr5 130235384 130235491 -22301768 + MIRm SINE MIR 165 275 -1 5 1578 581 205 32 24 chr5 130235692 130235817 -22301442 - B1_Mur1 SINE Alu 0 149 24 5 1578 293 239 169 0 chr5 130235792 130235863 -22301396 - ID4_ SINE ID 0 83 1 5 1578 773 138 54 0 chr5 130235967 130236097 -22301162 - B1_Mm SINE Alu 0 147 11 5 1578 474 268 42 73 chr5 130235969 130236134 -22301125 - B4 SINE B4 -69 223 64 5 1578 506 226 3 0 chr5 130236726 130237019 -22300240 + (TG)n Simple_repeat Simple_repeat 1 293 0 5 1578 21 71 0 0 chr5 130237628 130237670 -22299589 + AT_rich Low_complexity Low_complexity 1 42 0 5 1578 354 367 22 0 chr5 130238535 130238674 -22298585 + ID_B1 SINE B4 82 223 -1 5 1578 407 250 30 0 chr5 130238820 130238920 -22298339 - B1F SINE Alu -3 146 44 5 1578 749 128 8 8 chr5 130238958 130239076 -22298183 - PB1D9 SINE Alu -1 119 2 5 1578 325 21 0 20 chr5 130239084 130239133 -22298126 - B2_Mm2 SINE B2 -11 184 137 5 1578 249 93 0 0 chr5 130239172 130239198 -22298061 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1578 1107 50 50 0 chr5 130239198 130239338 -22297921 + B1_Mm SINE Alu 1 147 0 5 1578 249 93 0 0 chr5 130239338 130239354 -22297905 + (A)n Simple_repeat Simple_repeat 1 16 0 5 1578 228 35 0 0 chr5 130239367 130239396 -22297863 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1578 720 217 14 7 chr5 130239404 130239543 -22297716 - B3 SINE B2 -6 210 71 5 1578 413 236 170 32 chr5 130239543 130239731 -22297528 - Lx8 LINE L1 -33 7440 7227 5 1578 886 250 20 20 chr5 130239733 130239937 -22297322 + B3 SINE B2 7 210 -6 5 1578 24 0 0 0 chr5 130239948 130239972 -22297287 + AT_rich Low_complexity Low_complexity 1 24 0 5 1578 886 94 57 21 chr5 130239984 130240125 -22297134 + B1_Mus2 SINE Alu 1 146 -1 5 1578 291 300 12 36 chr5 130240127 130240210 -22297049 - Lx8 LINE L1 -235 7238 7158 5 1578 493 348 52 45 chr5 130240218 130240236 -22297023 - B4A SINE B4 -1 291 274 5 1578 240 111 0 0 chr5 130240236 130240272 -22296987 + (CGTG)n Simple_repeat Simple_repeat 4 39 0 5 1578 493 348 52 45 chr5 130240272 130240542 -22296717 - B4A SINE B4 -19 273 1 5 1578 489 245 9 9 chr5 130240609 130240720 -22296539 + PB1D10 SINE Alu 1 111 -6 5 1578 506 182 90 25 chr5 130240722 130240849 -22296410 - B1F SINE Alu 0 149 15 5 1578 255 276 35 87 chr5 130240756 130240871 -22296388 - MT2B2 LTR ERVL -321 263 155 5 1578 432 0 0 0 chr5 130241163 130241211 -22296048 + (TTGG)n Simple_repeat Simple_repeat 2 49 0 5 1578 790 165 8 0 chr5 130241211 130241344 -22295915 - B1_Mur4 SINE Alu -11 139 6 5 1578 1214 178 0 0 chr5 130242111 130242308 -22294951 - B3 SINE B2 -12 204 8 5 1578 189 0 0 0 chr5 130242326 130242347 -22294912 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 1578 796 174 0 45 chr5 130242370 130242526 -22294733 + B1_Mur1 SINE Alu 1 149 0 5 1578 297 322 22 0 chr5 130242565 130242655 -22294604 + B1F2 SINE Alu 57 148 -1 5 1578 1209 54 0 0 chr5 130242661 130242808 -22294451 + B1_Mus1 SINE Alu 2 148 0 5 1578 32 0 0 0 chr5 130242818 130242850 -22294409 + AT_rich Low_complexity Low_complexity 1 32 0 5 1578 989 62 8 0 chr5 130242854 130242982 -22294277 - B2_Mm2 SINE B2 -65 130 2 5 1578 279 0 0 0 chr5 130242993 130243024 -22294235 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5 1578 1222 29 0 0 chr5 130243024 130243162 -22294097 - B1_Mus2 SINE Alu -9 138 1 5 1578 26 30 0 0 chr5 130243217 130243250 -22294009 + AT_rich Low_complexity Low_complexity 1 33 0 5 1578 281 274 108 0 chr5 130243262 130243364 -22293895 - B1F1 SINE Alu -12 137 25 5 1578 385 215 81 6 chr5 130243422 130243530 -22293729 - B3A SINE B2 -72 123 2 5 1578 613 264 27 75 chr5 130243638 130243736 -22293523 + B4 SINE B4 1 89 -203 5 1578 629 129 0 0 chr5 130243736 130243829 -22293430 + B1_Mur4 SINE Alu 2 94 -56 5 1578 317 233 105 0 chr5 130243938 130244024 -22293235 + RSINE1 SINE B4 64 158 -7 5 1578 403 308 9 9 chr5 130244082 130244187 -22293072 + RSINE1 SINE B4 4 108 -57 5 1578 743 118 9 0 chr5 130244363 130244473 -22292786 - B1_Mus2 SINE Alu 0 147 37 5 1578 1133 45 0 0 chr5 130244506 130244640 -22292619 + B1_Mus1 SINE Alu 2 135 -13 5 1578 198 71 0 0 chr5 130244640 130244668 -22292591 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1578 399 212 252 17 chr5 130244668 130244783 -22292476 + B4 SINE B4 82 223 -69 5 1578 880 166 14 0 chr5 130244789 130244934 -22292325 + B1_Mur1 SINE Alu 3 149 0 5 1578 262 299 73 49 chr5 130244954 130245077 -22292182 + B4 SINE B4 148 273 -19 5 1578 207 226 19 0 chr5 130245089 130245142 -22292117 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 5 1578 228 67 0 0 chr5 130245519 130245549 -22291710 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 5 1578 1196 41 0 7 chr5 130245982 130246131 -22291128 + B2_Mm2 SINE B2 3 150 -45 5 1578 340 298 15 104 chr5 130246258 130246393 -22290866 + ID_B1 SINE B4 99 221 -3 5 1578 791 191 0 0 chr5 130246396 130246532 -22290727 + B1_Mur1 SINE Alu 1 136 -13 5 1578 558 231 19 0 chr5 130246566 130246659 -22290600 + B3A SINE B2 1 95 -103 5 1578 1452 196 83 32 chr5 130246659 130246893 -22290366 - ORR1D1 LTR MaLR 0 374 127 5 1578 312 48 0 0 chr5 130246893 130246935 -22290324 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1578 1452 196 83 32 chr5 130246935 130247048 -22290211 - ORR1D1 LTR MaLR -248 126 10 5 1578 596 212 18 9 chr5 130247041 130247155 -22290104 + B3 SINE B2 102 216 0 5 1578 627 233 36 29 chr5 130247168 130247305 -22289954 + B1_Mur3 SINE Alu 10 147 -2 5 1578 1291 87 6 0 chr5 130247460 130247632 -22289627 - B2_Mm1t SINE B2 -20 173 1 5 1578 1204 55 0 7 chr5 130247660 130247808 -22289451 - B1_Mus1 SINE Alu 0 148 2 5 1578 2617 153 160 8 chr5 130248251 130248758 -22288501 - RMER4B LTR ERVK 0 585 2 5 1578 186 43 0 0 chr5 130248803 130248826 -22288433 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1578 185 132 26 0 chr5 130249063 130249101 -22288158 + C-rich Low_complexity Low_complexity 3 41 0 5 1578 216 359 28 99 chr5 130249185 130249327 -22287932 + B4 SINE B4 74 205 -87 5 1578 606 214 7 85 chr5 130249206 130249359 -22287900 + B1F2 SINE Alu 9 149 0 5 1578 1135 216 0 0 chr5 130250260 130250454 -22286805 + B3 SINE B2 2 195 -21 5 1578 309 51 0 0 chr5 130251179 130251218 -22286041 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1578 552 308 43 19 chr5 130251522 130251537 -22285722 - ID_B1 SINE B4 -2 222 210 5 1578 195 42 0 0 chr5 130251537 130251561 -22285698 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5 1578 552 308 43 19 chr5 130251561 130251707 -22285552 - ID_B1 SINE B4 -15 209 57 5 1578 886 258 14 43 chr5 130251708 130251915 -22285344 + B3 SINE B2 16 216 0 5 1578 468 46 31 0 chr5 130252040 130252105 -22285154 + B1_Mus2 SINE Alu 68 134 -13 5 1578 339 196 130 0 chr5 130252471 130252563 -22284696 - PB1D10 SINE Alu -9 108 5 5 1578 1230 61 0 0 chr5 130252732 130252880 -22284379 - B1_Mus1 SINE Alu 0 148 1 5 1578 655 167 34 14 chr5 130252884 130253030 -22284229 - Lx4A LINE L1 0 7058 6910 5 1578 512 165 11 0 chr5 130253208 130253299 -22283960 + B1_Mur3 SINE Alu 56 147 -2 5 1578 1309 14 0 0 chr5 130253339 130253483 -22283776 + B1_Mm SINE Alu 4 147 0 5 1578 368 306 112 0 chr5 130253992 130254126 -22283133 - ID_B1 SINE B4 -3 221 73 5 1578 872 37 0 0 chr5 130254154 130254261 -22282998 + B2_Mm2 SINE B2 1 107 -88 5 1578 390 333 37 111 chr5 130254305 130254574 -22282685 + L1M4 LINE L1 4762 5003 -1143 5 1578 809 235 50 0 chr5 130254574 130254774 -22282485 + B3 SINE B2 1 210 -6 5 1578 390 333 37 111 chr5 130254774 130254882 -22282377 + L1M4 LINE L1 5004 5111 -1035 5 1578 694 234 14 14 chr5 130254885 130255032 -22282227 + ID_B1 SINE B4 78 224 0 5 1578 844 163 52 0 chr5 130255125 130255278 -22281981 - URR1B DNA MER1_type -7 218 58 5 1578 1231 21 0 7 chr5 130255928 130256070 -22281189 + B1_Mus2 SINE Alu 5 145 -2 5 1578 246 32 0 0 chr5 130256070 130256101 -22281158 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1578 1314 81 31 41 chr5 130256504 130256698 -22280561 + B2_Mm2 SINE B2 1 192 -3 5 1578 23 0 0 0 chr5 130256758 130256781 -22280478 + AT_rich Low_complexity Low_complexity 1 23 0 5 1578 1630 21 21 0 chr5 130256784 130256972 -22280287 - B2_Mm1a SINE B2 0 193 2 5 1578 954 166 188 0 chr5 130256978 130257159 -22280100 - B3 SINE B2 0 216 2 5 1578 372 256 216 49 chr5 130257215 130257400 -22279859 - B3 SINE B2 0 216 1 5 1578 438 36 0 0 chr5 130257787 130257843 -22279416 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1578 448 105 0 106 chr5 130257844 130257929 -22279330 - B1_Mur4 SINE Alu -1 149 74 5 1578 1129 297 156 17 chr5 130257945 130258534 -22278725 - Lx8 LINE L1 -251 7222 6552 5 1578 249 319 44 0 chr5 130258732 130258823 -22278436 - MurSatRep1 Unknown Unknown -1919 218 124 5 1578 596 198 16 9 chr5 130258908 130259057 -22278202 - B1F SINE Alu -1 147 3 5 1578 489 271 25 16 chr5 130259414 130259555 -22277704 + B1F SINE Alu 1 144 -5 5 1578 315 0 0 0 chr5 130259640 130259675 -22277584 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1578 237 354 20 20 chr5 130259756 130259854 -22277405 + B3 SINE B2 109 206 -10 5 1578 218 289 122 10 chr5 130259862 130259960 -22277299 + BC1_Mm scRNA scRNA 9 117 -35 5 1578 674 238 18 76 chr5 130260291 130260514 -22276745 + B3 SINE B2 2 211 -5 5 1578 295 259 60 36 chr5 130260565 130260649 -22276610 + B1F2 SINE Alu 15 100 -49 5 1578 439 237 52 17 chr5 130260971 130261087 -22276172 + PB1D7 SINE Alu 1 120 0 6 1578 706 264 98 0 chr5 130261104 130261278 -22275981 + B3 SINE B2 20 210 -6 6 1578 27 73 0 0 chr5 130261305 130261360 -22275899 + AT_rich Low_complexity Low_complexity 1 55 0 6 1578 29 0 0 0 chr5 130261391 130261420 -22275839 + AT_rich Low_complexity Low_complexity 1 29 0 6 1578 745 157 0 9 chr5 130261420 130261536 -22275723 - B1_Mur2 SINE Alu -34 115 1 6 1578 202 243 0 86 chr5 130261539 130261620 -22275639 + T-rich Low_complexity Low_complexity 1 74 0 6 1578 504 163 23 11 chr5 130261867 130261954 -22275305 - B1_Mur2 SINE Alu -2 147 60 6 1578 255 309 61 35 chr5 130262059 130262173 -22275086 + ID_B1 SINE B4 73 189 -35 6 1578 226 146 0 40 chr5 130262221 130262271 -22274988 - PB1D7 SINE Alu 0 120 73 6 1578 351 0 0 0 chr5 130262537 130262576 -22274683 + (TTA)n Simple_repeat Simple_repeat 1 39 0 6 1578 1113 85 0 0 chr5 130262593 130262734 -22274525 - B1_Mus1 SINE Alu -6 142 2 6 1578 639 183 137 0 chr5 130263262 130263393 -22273866 + B1F SINE Alu 1 149 0 6 1578 415 284 104 0 chr5 130264397 130264531 -22272728 - RSINE1 SINE B4 -15 150 3 6 1578 213 341 99 28 chr5 130264618 130264648 -22272611 - B4 SINE B4 -54 238 87 6 1578 321 348 36 0 chr5 130264648 130264760 -22272499 - PB1D7 SINE Alu -3 117 2 6 1578 1135 63 0 20 chr5 130264804 130264950 -22272309 - B1_Mus1 SINE Alu -5 143 1 6 1578 449 227 11 0 chr5 130265081 130265169 -22272090 - RSINE1 SINE B4 -71 94 6 6 1578 486 257 60 60 chr5 130265137 130265286 -22271973 - PB1D7 SINE Alu 0 149 1 6 1578 243 333 0 51 chr5 130265216 130265295 -22271964 - B4 SINE B4 -137 155 81 6 1578 380 229 265 61 chr5 130265326 130265372 -22271887 + ID SINE ID 2 46 -178 6 1578 2608 68 3 0 chr5 130265372 130265698 -22271561 - ORR1A2 LTR MaLR 0 327 1 6 1578 380 229 265 61 chr5 130265698 130265832 -22271427 + ID_B1 SINE B4 47 219 -5 6 1578 260 140 58 39 chr5 130265787 130265839 -22271420 + PB1D7 SINE Alu 68 120 0 6 1578 445 240 0 19 chr5 130266385 130266491 -22270768 - ID_B1 SINE B4 -106 118 15 6 1578 263 200 0 91 chr5 130266431 130266508 -22270751 - BC1_Mm scRNA scRNA -81 71 2 6 1578 851 80 0 0 chr5 130266523 130266636 -22270623 + B1_Mus1 SINE Alu 36 148 0 6 1578 808 175 0 40 chr5 130266648 130266797 -22270462 + B1_Mur3 SINE Alu 6 148 -1 6 1578 464 265 31 98 chr5 130266814 130266977 -22270282 - RSINE1 SINE B4 0 165 14 6 1578 315 71 0 0 chr5 130267012 130267054 -22270205 + (TC)n Simple_repeat Simple_repeat 1 42 0 6 1578 198 0 0 0 chr5 130267075 130267097 -22270162 + (TG)n Simple_repeat Simple_repeat 1 22 0 6 1578 740 238 73 28 chr5 130267104 130267281 -22269978 - B3 SINE B2 -31 185 1 6 1578 198 0 0 0 chr5 130267313 130267335 -22269924 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1578 214 297 172 21 chr5 130267338 130267431 -22269828 - RSINE1 SINE B4 -28 137 31 6 1578 296 263 158 50 chr5 130267451 130267571 -22269688 - ID_B1 SINE B4 -10 214 82 6 1578 258 339 0 9 chr5 130267584 130267700 -22269559 - PB1D10 SINE Alu -2 115 1 6 1578 264 226 81 23 chr5 130268492 130268578 -22268681 - B1F2 SINE Alu -58 91 1 6 1578 564 174 0 0 chr5 130268620 130268720 -22268539 + (TA)n Simple_repeat Simple_repeat 1 100 0 6 1578 1473 65 5 0 chr5 130268720 130268904 -22268355 - B2_Mm1a SINE B2 -8 185 1 6 1578 564 174 0 0 chr5 130268904 130268912 -22268347 + (TA)n Simple_repeat Simple_repeat 1 8 0 6 1578 503 264 137 20 chr5 130268959 130269156 -22268103 + ID_B1 SINE B4 2 221 -3 6 1578 324 91 30 15 chr5 130269519 130269586 -22267673 + (TG)n Simple_repeat Simple_repeat 1 68 0 6 1578 522 257 84 39 chr5 130269589 130269743 -22267516 - RSINE1 SINE B4 -2 163 3 6 1578 462 195 156 0 chr5 130269842 130269970 -22267289 - B1F2 SINE Alu 0 149 2 6 1578 27 0 0 0 chr5 130269978 130270005 -22267254 + AT_rich Low_complexity Low_complexity 1 27 0 6 1578 3184 19 11 0 chr5 130270057 130270424 -22266835 - L1Md_F2 LINE L1 -12 6570 6200 6 1578 766 239 48 21 chr5 130270440 130270628 -22266631 - B3 SINE B2 -1 215 23 6 1578 835 173 0 0 chr5 130270609 130270742 -22266517 + B1_Mur4 SINE Alu 13 145 -5 6 1578 344 260 83 46 chr5 130270779 130270888 -22266371 - PB1D10 SINE Alu 0 117 5 6 1578 447 200 88 35 chr5 130271093 130271207 -22266052 + PB1D9 SINE Alu 1 120 0 6 1578 739 133 106 30 chr5 130271235 130271367 -22265892 - B1_Mus1 SINE Alu -5 143 2 6 1578 24 0 0 0 chr5 130271829 130271853 -22265406 + AT_rich Low_complexity Low_complexity 1 24 0 6 1578 868 173 117 48 chr5 130271879 130271965 -22265294 + ORR1C2 LTR MaLR 141 234 -150 6 1578 203 0 37 0 chr5 130271965 130271992 -22265267 + (CCTG)n Simple_repeat Simple_repeat 3 30 0 6 1578 868 181 99 21 chr5 130271992 130272126 -22265133 + ORR1C2 LTR MaLR 235 383 -1 6 1578 665 233 92 24 chr5 130272758 130272965 -22264294 - ID_B1 SINE B4 -3 221 1 6 1578 333 309 73 0 chr5 130273021 130273131 -22264128 - PB1D7 SINE Alu 0 120 3 6 1578 247 271 0 0 chr5 130273202 130273261 -22263998 - ID_B1 SINE B4 -52 172 114 6 1578 333 295 21 41 chr5 130273292 130273437 -22263822 - RSINE1 SINE B4 -21 144 3 6 1578 700 99 90 0 chr5 130273481 130273592 -22263667 + B1_Mus1 SINE Alu 27 147 -1 6 1578 296 214 86 43 chr5 130273637 130273730 -22263529 - ID_B1 SINE B4 0 224 128 6 1578 23 33 0 0 chr5 130273825 130273855 -22263404 + AT_rich Low_complexity Low_complexity 1 30 0 6 1578 268 298 0 56 chr5 130273916 130274005 -22263254 - B3 SINE B2 -125 91 8 6 1578 386 225 50 0 chr5 130274012 130274092 -22263167 - PB1D7 SINE Alu 0 120 37 6 1578 548 250 40 0 chr5 130274334 130274482 -22262777 + B3A SINE B2 1 154 -44 6 1578 1011 211 24 14 chr5 130274511 130274722 -22262537 - B3 SINE B2 -3 213 1 6 1578 1089 102 150 0 chr5 130274754 130274941 -22262318 + B3 SINE B2 1 215 -1 6 1578 276 77 0 0 chr5 130274964 130275003 -22262256 + (TTA)n Simple_repeat Simple_repeat 2 40 0 6 1578 1277 20 0 20 chr5 130275625 130275775 -22261484 - B1_Mus2 SINE Alu 0 147 1 6 1578 446 235 17 25 chr5 130275777 130275895 -22261364 - PB1D7 SINE Alu -2 118 2 6 1578 223 348 124 0 chr5 130275933 130275950 -22261309 - PB1D9 SINE Alu -8 112 13 6 1578 256 306 69 0 chr5 130275950 130276022 -22261237 - ID_B1 SINE B4 -54 170 94 6 1578 432 0 0 0 chr5 130276034 130276082 -22261177 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1578 537 204 0 27 chr5 130276082 130276193 -22261066 - PB1D10 SINE Alu -9 108 1 6 1578 255 61 0 0 chr5 130276306 130276339 -22260920 + (G)n Simple_repeat Simple_repeat 1 33 0 6 1578 204 40 0 0 chr5 130277278 130277303 -22259956 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1578 566 250 47 7 chr5 130277538 130277687 -22259572 + ID_B1 SINE B4 1 155 -69 6 1578 825 175 7 0 chr5 130277688 130277825 -22259434 + B3A SINE B2 1 138 -60 6 1578 471 113 0 0 chr5 130277825 130277896 -22259363 + (CA)n Simple_repeat Simple_repeat 1 71 0 6 1578 620 214 12 99 chr5 130277896 130277919 -22259340 + B2_Mm2 SINE B2 126 147 -48 6 1578 716 164 9 0 chr5 130277939 130278049 -22259210 + B1_Mur4 SINE Alu 2 112 -38 6 1578 296 271 93 10 chr5 130278099 130278196 -22259063 + B1F SINE Alu 40 144 -5 6 1578 379 169 56 14 chr5 130278126 130278198 -22259061 + ID_B1 SINE B4 147 221 -3 6 1578 265 257 153 18 chr5 130278208 130278319 -22258940 + RSINE1 SINE B4 11 136 -29 6 1578 506 239 22 129 chr5 130278518 130278696 -22258563 + ID_B1 SINE B4 65 223 -1 6 1578 549 211 8 26 chr5 130278709 130278813 -22258446 + PB1D10 SINE Alu 1 104 -13 6 1578 252 0 0 0 chr5 130278813 130278841 -22258418 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 6 1578 549 211 8 26 chr5 130278841 130278853 -22258406 + PB1D10 SINE Alu 105 115 -2 6 1578 522 204 200 20 chr5 130278867 130279017 -22258242 + B3 SINE B2 36 212 -4 6 1578 5281 59 5 6 chr5 130279440 130280103 -22257156 + L1Md_F2 LINE L1 5920 6581 -1 6 1578 997 123 0 14 chr5 130280235 130280383 -22256876 + B1_Mus1 SINE Alu 3 148 0 6 1578 269 244 76 98 chr5 130280434 130280566 -22256693 + B2_Mm2 SINE B2 56 184 -11 6 1578 320 270 69 49 chr5 130280690 130280834 -22256425 - B1F SINE Alu 0 149 3 6 1578 598 266 6 43 chr5 130280840 130281001 -22256258 + RSINE1 SINE B4 11 165 0 6 1578 396 59 0 0 chr5 130281111 130281162 -22256097 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1578 345 302 296 0 chr5 130281209 130281368 -22255891 + B3A SINE B2 2 207 -9 6 1578 195 42 0 0 chr5 130281371 130281395 -22255864 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1578 1145 225 91 74 chr5 130281419 130281770 -22255489 + RMER4B LTR ERVK 16 372 -213 6 1578 1011 90 83 0 chr5 130281771 130281916 -22255343 + B2_Mm2 SINE B2 2 158 -37 6 1578 748 171 8 0 chr5 130282089 130282206 -22255053 - B1_Mur4 SINE Alu -24 126 9 6 1578 323 342 0 0 chr5 130282252 130282366 -22254893 + PB1D7 SINE Alu 1 114 -6 6 1578 24 0 0 0 chr5 130282366 130282390 -22254869 + AT_rich Low_complexity Low_complexity 1 24 0 6 1578 1073 173 38 0 chr5 130282392 130282577 -22254682 + B3 SINE B2 1 192 -24 6 1578 538 241 97 60 chr5 130282875 130283091 -22254168 + ID_B1 SINE B4 1 224 0 6 1578 290 262 0 111 chr5 130283394 130283484 -22253775 + B1F SINE Alu 4 83 -66 6 1578 290 231 85 49 chr5 130283555 130283621 -22253638 + B4 SINE B4 146 217 -75 7 1578 216 0 0 0 chr5 130283621 130283645 -22253614 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 7 1578 900 145 0 7 chr5 130283645 130283791 -22253468 + B1_Mus2 SINE Alu 2 146 -1 7 1578 290 231 85 49 chr5 130283791 130283805 -22253454 + B4 SINE B4 218 229 -63 7 1578 342 245 44 105 chr5 130283808 130283922 -22253337 + B1F SINE Alu 43 149 0 7 1578 251 265 11 15 chr5 130284178 130284254 -22253005 + PB1D10 SINE Alu 15 89 -31 7 1578 560 206 45 84 chr5 130284308 130284462 -22252797 + B3A SINE B2 1 148 -50 7 1578 378 42 0 0 chr5 130284463 130284511 -22252748 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1578 681 226 87 31 chr5 130285456 130285503 -22251756 + ID SINE ID 18 69 -155 7 197 539 93 225 36 chr5 130285503 130285614 -22251645 + B1_Mus1 SINE Alu 5 136 -12 7 1579 681 226 87 31 chr5 130285614 130285762 -22251497 + ID_B1 SINE B4 70 224 0 7 1579 248 300 102 34 chr5 130285828 130286004 -22251255 + B2_Mm2 SINE B2 2 189 -6 7 1579 664 85 11 0 chr5 130286026 130286120 -22251139 - B1_Mur3 SINE Alu -12 137 43 7 1579 1074 190 29 5 chr5 130286125 130286331 -22250928 - B3 SINE B2 -5 211 1 7 1579 216 0 0 0 chr5 130286337 130286361 -22250898 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 7 1579 240 194 29 15 chr5 130286386 130286440 -22250819 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1579 609 300 107 30 chr5 130286440 130286711 -22250548 - B4A SINE B4 0 292 1 7 1579 240 194 29 15 chr5 130286711 130286724 -22250535 + (TG)n Simple_repeat Simple_repeat 2 14 0 7 1579 290 236 14 14 chr5 130286750 130286823 -22250436 + GA-rich Low_complexity Low_complexity 5 77 0 7 1579 352 289 35 9 chr5 130286896 130287014 -22250245 - B1F SINE Alu -21 128 2 7 1579 427 240 10 50 chr5 130287291 130287392 -22249867 + PB1D9 SINE Alu 12 108 -12 7 1579 225 0 0 0 chr5 130287392 130287417 -22249842 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 7 1579 695 226 0 7 chr5 130287599 130287737 -22249522 - RSINE1 SINE B4 -21 144 8 7 1579 414 187 68 37 chr5 130287831 130287992 -22249267 + RMER17C LTR ERVK 112 277 -133 7 1579 288 241 42 84 chr5 130288336 130288431 -22248828 + PB1D9 SINE Alu 29 119 -1 7 1579 762 165 329 0 chr5 130288500 130288670 -22248589 + URR1A DNA MER1_type 1 226 0 7 1579 318 281 151 86 chr5 130288690 130288777 -22248482 + L1MC4 LINE L1 7246 7335 -707 7 1579 757 195 45 66 chr5 130288777 130288975 -22248284 - B3A SINE B2 -1 197 4 7 1579 318 281 151 86 chr5 130288975 130289179 -22248080 + L1MC4 LINE L1 7336 7556 -486 7 1579 544 257 36 7 chr5 130289191 130289328 -22247931 + B1F SINE Alu 1 141 -8 7 1579 592 273 23 0 chr5 130289328 130289456 -22247803 + ID_B1 SINE B4 79 209 -15 7 1579 1359 83 22 0 chr5 130289587 130289768 -22247491 + B2_Mm2 SINE B2 2 186 -9 7 1579 922 249 9 9 chr5 130289846 130290061 -22247198 - B3 SINE B2 0 216 2 7 1579 27 0 0 0 chr5 130290260 130290287 -22246972 + AT_rich Low_complexity Low_complexity 1 27 0 7 1579 586 197 0 118 chr5 130290288 130290432 -22246827 - B1_Mm SINE Alu 0 147 21 7 1579 441 214 137 0 chr5 130290425 130290542 -22246717 + ID_B1 SINE B4 79 211 -13 7 1579 541 299 67 88 chr5 130290540 130290639 -22246620 + B4 SINE B4 5 201 -91 7 1579 847 178 0 0 chr5 130290639 130290785 -22246474 + B1_Mur4 SINE Alu 2 147 -3 7 1579 541 299 67 88 chr5 130290785 130290823 -22246436 + B4 SINE B4 202 281 -11 7 1579 369 286 6 58 chr5 130291123 130291139 -22246120 + ID_B1 SINE B4 77 165 -59 7 1579 746 182 53 0 chr5 130291139 130291271 -22245988 + B1_Mus2 SINE Alu 9 147 0 7 1579 240 299 60 78 chr5 130291363 130291479 -22245780 + B4A SINE B4 51 164 -128 7 1579 639 220 228 18 chr5 130291466 130291633 -22245626 + B3 SINE B2 15 216 0 7 1579 422 173 24 31 chr5 130291642 130291738 -22245521 + PB1D10 SINE Alu 40 150 0 7 1579 715 119 8 0 chr5 130292029 130292145 -22245114 - B1_Mur1 SINE Alu 0 149 26 7 1579 21 57 0 0 chr5 130292358 130292393 -22244866 + AT_rich Low_complexity Low_complexity 1 35 0 7 1579 21 0 0 0 chr5 130292574 130292595 -22244664 + AT_rich Low_complexity Low_complexity 1 21 0 7 1579 23 0 0 0 chr5 130294194 130294217 -22243042 + AT_rich Low_complexity Low_complexity 1 23 0 7 1579 386 232 133 57 chr5 130294431 130294536 -22242723 + PB1D9 SINE Alu 1 113 -7 7 1579 288 192 19 0 chr5 130294611 130294663 -22242596 - PB1D9 SINE Alu 0 120 68 7 1579 188 0 0 69 chr5 130295548 130295577 -22241682 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 7 1579 1651 5 0 50 chr5 130296737 130296939 -22240320 + B2_Mm1a SINE B2 2 193 0 7 1579 1019 144 38 22 chr5 130296964 130297148 -22240111 - B2_Mm2 SINE B2 -7 188 2 7 1579 528 152 88 29 chr5 130298212 130298314 -22238945 + B1_Mus1 SINE Alu 28 135 -13 7 1579 213 258 182 0 chr5 130298443 130298509 -22238750 - RSINE1 SINE B4 -41 124 47 7 1579 355 292 19 19 chr5 130298634 130298742 -22238517 + B3A SINE B2 1 108 -90 7 1579 291 321 25 0 chr5 130298936 130299017 -22238242 - B1_Mur3 SINE Alu -61 88 6 7 1579 450 0 0 0 chr5 130299030 130299080 -22238179 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1579 437 281 71 7 chr5 130299081 130299235 -22238024 - B3 SINE B2 -50 166 3 7 1579 234 0 0 0 chr5 130299700 130299726 -22237533 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 7 1579 310 103 32 79 chr5 130299726 130299789 -22237470 - B1F SINE Alu -1 148 89 7 1579 296 286 11 35 chr5 130299799 130299886 -22237373 - RMER15 LTR ERVL -114 461 377 7 1579 515 213 70 53 chr5 130300073 130300187 -22237072 - PB1D9 SINE Alu -1 119 4 7 1579 225 286 0 125 chr5 130300109 130300197 -22237062 - MT2B LTR ERVL -367 234 158 7 1579 1228 73 12 0 chr5 130320586 130320750 -22216509 - B2_Mm1a SINE B2 -27 166 1 7 1579 230 306 0 0 chr5 130322003 130322052 -22215207 + ID_B1 SINE B4 81 129 -95 7 1579 268 309 165 0 chr5 130322009 130322106 -22215153 + PB1D9 SINE Alu 6 118 -2 7 1579 183 80 0 0 chr5 130323109 130323134 -22214125 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1579 645 258 63 1 chr5 130323377 130323557 -22213702 - B3 SINE B2 -8 208 18 7 1579 446 182 76 48 chr5 130323564 130323669 -22213590 - B1_Mur1 SINE Alu 0 149 45 7 1579 273 29 0 0 chr5 130323737 130323771 -22213488 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 7 1579 293 272 12 24 chr5 130323778 130323861 -22213398 - PB1D10 SINE Alu -17 100 19 7 1579 450 228 20 20 chr5 130323860 130323984 -22213275 - PB1D9 SINE Alu -11 138 15 7 1579 878 130 43 0 chr5 130324069 130324207 -22213052 - B1_Mus1 SINE Alu 0 148 5 7 1579 390 219 31 149 chr5 130324404 130324565 -22212694 + B1_Mur1 SINE Alu 1 142 -7 7 1579 364 286 8 89 chr5 130324626 130324679 -22212580 + B4A SINE B4 41 83 -209 7 1579 296 345 26 58 chr5 130324679 130324780 -22212479 + B1F2 SINE Alu 1 101 -48 7 1579 216 0 0 0 chr5 130324780 130324804 -22212455 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1579 296 345 26 58 chr5 130324804 130324856 -22212403 + B1F2 SINE Alu 102 149 0 7 1579 530 260 180 11 chr5 130324878 130325061 -22212198 + ID_B1 SINE B4 9 222 -2 7 1579 636 179 9 0 chr5 130325118 130325224 -22212035 + PB1D9 SINE Alu 6 112 -8 7 1579 312 252 190 16 chr5 130325224 130325239 -22212020 + B4 SINE B4 91 232 -60 7 1579 711 226 69 42 chr5 130325335 130325524 -22211735 + B3A SINE B2 2 195 -3 7 1579 1121 65 7 0 chr5 130325543 130325682 -22211577 + B1_Mus1 SINE Alu 2 141 -7 7 1579 914 173 6 23 chr5 130326093 130326265 -22210994 - B3 SINE B2 0 216 48 7 1579 534 216 0 0 chr5 130326270 130326372 -22210887 - B1_Mm SINE Alu -37 110 9 7 1579 302 255 0 113 chr5 130326278 130326384 -22210875 - MT2B LTR ERVL -344 257 164 7 1579 243 272 143 19 chr5 130326337 130326386 -22210873 - B3A SINE B2 -78 120 61 7 1579 2911 19 3 0 chr5 130326386 130326711 -22210548 + IAPLTR3 LTR ERVK 1 326 0 7 1579 243 272 143 19 chr5 130326711 130326766 -22210493 - B3A SINE B2 -138 60 3 7 1579 291 242 0 31 chr5 130326957 130327021 -22210238 + RSINE1 SINE B4 104 165 0 7 1579 180 217 0 0 chr5 130327021 130327067 -22210192 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1579 322 302 62 31 chr5 130327067 130327197 -22210062 + L1MEg LINE L1 1814 1947 -4137 7 1579 661 100 137 32 chr5 130327204 130327328 -22209931 + B1_Mur4 SINE Alu 14 150 0 7 1579 192 152 0 0 chr5 130327328 130327361 -22209898 + A-rich Low_complexity Low_complexity 1 33 0 7 1579 310 297 69 23 chr5 130327448 130327579 -22209680 + ID_B1 SINE B4 86 222 -2 7 1579 230 239 0 0 chr5 130327624 130327670 -22209589 + B1_Mur1 SINE Alu 78 123 -26 7 1579 508 197 134 215 chr5 130327670 130327803 -22209456 + URR1A DNA MER1_type 1 92 -134 7 1579 1566 62 0 0 chr5 130327803 130327996 -22209263 - B2_Mm1a SINE B2 0 193 1 7 1579 508 197 134 215 chr5 130327996 130328108 -22209151 + URR1A DNA MER1_type 93 226 0 7 1579 928 26 0 0 chr5 130328112 130328226 -22209033 + B1_Mus2 SINE Alu 34 147 0 7 1579 1292 107 11 0 chr5 130328433 130328620 -22208639 - B2_Mm1a SINE B2 -4 189 1 7 1579 232 256 211 0 chr5 130328998 130329088 -22208171 + PB1D10 SINE Alu 1 109 -8 7 1579 690 123 140 44 chr5 130329285 130329421 -22207838 - B1_Mur2 SINE Alu 0 149 1 7 1579 616 260 171 0 chr5 130329431 130329612 -22207647 - ID_B1 SINE B4 -7 217 6 7 1579 773 179 14 7 chr5 130329635 130329781 -22207478 + B1_Mus2 SINE Alu 1 147 0 7 1579 634 191 27 34 chr5 130330045 130330191 -22207068 - B1_Mur3 SINE Alu -3 146 2 7 1579 276 171 286 0 chr5 130330327 130330397 -22206862 - B1F1 SINE Alu -51 98 9 8 1579 225 254 45 0 chr5 130330339 130330406 -22206853 - B4A SINE B4 -140 152 83 8 1579 831 106 13 39 chr5 130330823 130330970 -22206289 - B1_Mur4 SINE Alu 0 150 1 8 1579 277 271 48 143 chr5 130330826 130330994 -22206265 - B4A SINE B4 -68 224 73 8 1579 628 257 92 54 chr5 130331015 130331254 -22206005 + RMER21B LTR ERV1 320 567 -275 8 1579 3303 193 90 87 chr5 130331286 130332110 -22205149 - RMER13A LTR ERVK -34 826 1 8 1579 1104 182 24 15 chr5 130332362 130332568 -22204691 + B3 SINE B2 1 208 -8 8 1579 1054 121 24 6 chr5 130332591 130332758 -22204501 - MTB LTR MaLR -55 345 176 8 1579 1249 41 0 0 chr5 130332764 130332910 -22204349 + B1_Mus2 SINE Alu 1 146 -1 8 1579 23 54 0 0 chr5 130332910 130332947 -22204312 + AT_rich Low_complexity Low_complexity 1 37 0 8 1579 630 306 59 0 chr5 130332955 130333141 -22204118 - B3A SINE B2 0 198 2 8 1579 888 154 0 32 chr5 130333160 130333314 -22203945 + B1_Mur2 SINE Alu 1 149 0 8 1579 264 237 0 0 chr5 130333411 130333470 -22203789 - B1F1 SINE Alu -85 64 6 8 1579 687 129 164 0 chr5 130333479 130333595 -22203664 - B1_Mur4 SINE Alu -15 135 1 8 1579 501 32 0 0 chr5 130333851 130333914 -22203345 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1579 652 242 8 0 chr5 130334383 130334515 -22202744 - RSINE1 SINE B4 -8 157 25 8 1579 1722 26 0 0 chr5 130334566 130334759 -22202500 + B2_Mm1t SINE B2 1 193 0 8 1579 781 186 35 0 chr5 130334774 130334919 -22202340 + B1_Mur4 SINE Alu 1 150 0 8 1579 29 0 0 0 chr5 130335171 130335200 -22202059 + AT_rich Low_complexity Low_complexity 1 29 0 8 1579 419 212 0 83 chr5 130335200 130335211 -22202048 + MT2B2 LTR ERVL 153 154 -430 8 1579 604 162 0 10 chr5 130335211 130335311 -22201948 + B1_Mm SINE Alu 1 99 -48 8 1579 1252 249 71 71 chr5 130336738 130336984 -22200275 - MT2B LTR ERVL -1 600 372 8 1579 4109 89 34 9 chr5 130336984 130337552 -22199707 - MT2B2 LTR ERVL -2 582 1 8 1579 1252 249 71 71 chr5 130337552 130337645 -22199614 - MT2B LTR ERVL -230 371 257 8 1579 1561 58 16 0 chr5 130337645 130337836 -22199423 + B2_Mm2 SINE B2 2 195 0 8 1579 1252 221 141 54 chr5 130337836 130337953 -22199306 - MT2B LTR ERVL -345 256 191 8 1579 1653 167 129 18 chr5 130338108 130338450 -22198809 - ORR1C2 LTR MaLR -4 380 1 8 1579 422 181 102 41 chr5 130339003 130339101 -22198158 - PB1D10 SINE Alu -9 108 5 8 1579 1626 42 0 0 chr5 130339296 130339485 -22197774 - B2_Mm1t SINE B2 -3 190 2 8 1579 499 226 0 0 chr5 130339527 130339620 -22197639 - ID_B1 SINE B4 -3 221 129 8 1579 295 265 27 117 chr5 130339620 130339638 -22197621 - PB1 SINE Alu -4 123 23 8 1579 722 233 49 49 chr5 130339635 130339838 -22197421 + B3 SINE B2 14 216 0 8 1579 25 31 0 0 chr5 130339960 130339992 -22197267 + AT_rich Low_complexity Low_complexity 1 32 0 8 1579 228 286 270 20 chr5 130340055 130340155 -22197104 - PB1 SINE Alu -2 125 1 8 1579 982 235 237 11 chr5 130341034 130341307 -22195952 + MTE2b LTR MaLR 2 336 -43 8 1579 1164 72 0 0 chr5 130341328 130341467 -22195792 - B1_Mus1 SINE Alu -8 140 2 8 1579 1619 47 0 0 chr5 130341491 130341684 -22195575 - B2_Mm1t SINE B2 0 193 1 8 1579 544 142 31 56 chr5 130342311 130342455 -22194804 - B1_Mm SINE Alu -17 132 1 8 1579 746 208 214 0 chr5 130342455 130342643 -22194616 - B4A SINE B4 -61 231 3 8 1579 1231 72 78 0 chr5 130342996 130343163 -22194096 - B2_Mm2 SINE B2 -14 181 2 8 1579 670 218 15 0 chr5 130343163 130343296 -22193963 - B1_Mur3 SINE Alu -14 135 1 8 1579 828 254 53 34 chr5 130343307 130343515 -22193744 - ID_B1 SINE B4 0 224 13 8 1579 402 290 37 0 chr5 130343520 130343627 -22193632 - PB1D7 SINE Alu 0 120 10 8 1579 254 325 0 24 chr5 130343659 130343741 -22193518 - ID4 SINE ID -2 81 2 8 1579 405 273 12 117 chr5 130343750 130343793 -22193466 - B3 SINE B2 0 216 185 8 1579 216 0 0 0 chr5 130343793 130343817 -22193442 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1579 405 273 12 117 chr5 130343817 130343935 -22193324 - B3 SINE B2 -32 184 72 8 1579 788 159 0 15 chr5 130343931 130344065 -22193194 + B1_Mur1 SINE Alu 11 142 -7 8 1579 2892 24 0 0 chr5 130344071 130344401 -22192858 + L1Md_A LINE L1 6253 6582 0 8 1579 1437 66 11 0 chr5 130344412 130344593 -22192666 + B2_Mm2 SINE B2 1 183 -12 8 1579 225 0 0 0 chr5 130344593 130344618 -22192641 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 8 1579 1140 84 7 0 chr5 130344620 130344762 -22192497 - B1_Mus1 SINE Alu -4 144 2 8 1579 22 0 0 0 chr5 130344762 130344784 -22192475 + AT_rich Low_complexity Low_complexity 1 22 0 8 1579 1437 81 11 0 chr5 130344840 130345026 -22192233 - B2_Mm1t SINE B2 -5 188 1 8 1579 315 0 0 0 chr5 130345699 130345734 -22191525 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1579 689 208 87 11 chr5 130345790 130345944 -22191315 + ID_B1 SINE B4 74 232 -60 8 1579 775 260 22 17 chr5 130345950 130346130 -22191129 + B3A SINE B2 2 182 -16 8 1579 674 129 8 87 chr5 130346240 130346272 -22190987 - MTC LTR MaLR -303 118 97 8 1579 1641 37 0 5 chr5 130346272 130346464 -22190795 - B2_Mm2 SINE B2 -4 191 1 8 1579 674 129 8 87 chr5 130346464 130346558 -22190701 - MTC LTR MaLR -325 96 2 8 1579 367 208 124 88 chr5 130346572 130346595 -22190664 - B4A SINE B4 -60 232 217 8 1579 233 29 0 29 chr5 130346595 130346630 -22190629 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1579 367 208 124 88 chr5 130346630 130346743 -22190516 - B4A SINE B4 -76 216 91 8 1579 631 116 1 40 chr5 130346632 130346745 -22190514 - B1_Mur4 SINE Alu -13 107 3 8 1579 320 261 33 33 chr5 130346892 130346983 -22190276 - PB1D7 SINE Alu -17 103 13 8 1579 1576 42 0 26 chr5 130347014 130347209 -22190050 - B2_Mm2 SINE B2 -5 190 1 8 1579 252 0 0 0 chr5 130347476 130347504 -22189755 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 8 1579 189 0 0 0 chr5 130347680 130347701 -22189558 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 8 1579 1173 75 0 0 chr5 130347707 130347853 -22189406 - B1_Mus2 SINE Alu 0 147 2 8 1579 627 217 62 8 chr5 130347863 130347993 -22189266 - B1_Mm SINE Alu -7 140 4 8 1579 613 139 33 0 chr5 130348008 130348102 -22189157 + polypyrimidine Low_complexity Low_complexity 31 128 0 8 1579 678 145 141 30 chr5 130348102 130348237 -22189022 - B1_Mur4 SINE Alu 0 150 1 8 1579 613 139 33 0 chr5 130348237 130348264 -22188995 + polypyrimidine Low_complexity Low_complexity 4 30 0 8 1579 917 132 0 22 chr5 130348292 130348431 -22188828 + B1_Mur3 SINE Alu 9 144 -5 8 1579 878 143 156 0 chr5 130348431 130348585 -22188674 + B2_Mm1t SINE B2 2 179 -14 8 1579 444 96 340 19 chr5 130348651 130348757 -22188502 + B2_Mm2 SINE B2 47 186 -9 8 1579 231 36 0 0 chr5 130348865 130348893 -22188366 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1579 386 226 281 7 chr5 130349795 130349930 -22187329 + B3 SINE B2 46 216 0 8 1579 290 153 0 27 chr5 130350274 130350348 -22186911 + (TTTG)n Simple_repeat Simple_repeat 1 72 0 8 1579 1191 68 0 0 chr5 130350348 130350494 -22186765 - B1_Mm SINE Alu -1 146 1 8 1579 608 38 13 0 chr5 130350520 130350599 -22186660 + (TC)n Simple_repeat Simple_repeat 1 80 0 8 1579 548 130 155 47 chr5 130350611 130350740 -22186519 - B1_Mur4 SINE Alu 0 150 8 8 1579 211 256 12 71 chr5 130350703 130350787 -22186472 + B1_Mus2 SINE Alu 61 139 -8 8 1579 514 276 28 39 chr5 130350825 130351006 -22186253 - B3A SINE B2 -18 180 2 8 1579 1278 14 0 13 chr5 130351291 130351440 -22185819 + B1_Mm SINE Alu 1 147 0 8 1579 476 237 67 42 chr5 130351459 130351578 -22185681 - ID_B1 SINE B4 -17 207 86 8 1579 362 259 37 0 chr5 130351692 130351773 -22185486 - B3 SINE B2 0 216 133 8 1579 312 70 0 0 chr5 130351806 130351849 -22185410 + (T)n Simple_repeat Simple_repeat 1 43 0 8 1579 542 25 0 24 chr5 130351883 130351965 -22185294 - L1Md_F2 LINE L1 0 6582 6503 8 1579 474 148 67 11 chr5 130352059 130352148 -22185111 - RLTR1B LTR ERV1 -76 436 343 8 1579 415 74 0 0 chr5 130352152 130352206 -22185053 - RLTR1B LTR ERV1 -102 410 357 8 1579 1064 53 23 0 chr5 130352206 130352338 -22184921 - B1_Mus1 SINE Alu -11 137 3 8 1579 282 268 143 75 chr5 130352405 130352538 -22184721 - B1F SINE Alu -7 142 1 8 1579 286 221 0 67 chr5 130352551 130352658 -22184601 + B1_Mur4 SINE Alu 26 114 -6 8 1579 694 75 9 9 chr5 130352659 130352766 -22184493 + (GAAA)n Simple_repeat Simple_repeat 4 110 0 8 1579 249 108 0 0 chr5 130352766 130352803 -22184456 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 8 1579 382 192 66 0 chr5 130352803 130352841 -22184418 + B1F2 SINE Alu 40 147 -2 8 1579 384 121 0 0 chr5 130352841 130352899 -22184360 + ID_B1 SINE B4 165 222 -2 8 1579 969 195 14 151 chr5 130352924 130353142 -22184117 + B3 SINE B2 8 215 -1 8 1579 615 185 0 48 chr5 130353413 130353538 -22183721 - PB1D9 SINE Alu 0 120 2 8 1579 24 0 0 0 chr5 130353568 130353592 -22183667 + AT_rich Low_complexity Low_complexity 1 24 0 8 1579 796 156 8 0 chr5 130353610 130353738 -22183521 - B3 SINE B2 -86 130 2 8 1579 378 181 0 108 chr5 130353745 130353838 -22183421 - ID SINE ID -141 83 1 8 1579 413 189 198 10 chr5 130355177 130355273 -22181986 + B1_Mus1 SINE Alu 34 147 -1 8 1579 437 57 0 0 chr5 130355315 130355368 -22181891 - ORR1A3 LTR MaLR -2 324 272 8 1579 352 75 0 0 chr5 130355391 130355444 -22181815 - ORR1A3 LTR MaLR -274 53 1 8 1579 460 309 109 18 chr5 130355444 130355609 -22181650 - B3 SINE B2 -35 181 2 8 1579 710 252 32 55 chr5 130355611 130355829 -22181430 - B3 SINE B2 -1 215 3 9 1579 969 128 0 21 chr5 130355884 130356028 -22181231 - B1_Mus1 SINE Alu -5 143 3 9 1579 898 54 46 8 chr5 130356153 130356284 -22180975 - B2_Mm2 SINE B2 -3 192 57 9 1579 658 171 42 21 chr5 130356309 130356452 -22180807 - B1_Mur3 SINE Alu -3 146 1 9 1579 415 185 74 32 chr5 130356466 130356561 -22180698 + PB1D10 SINE Alu 1 99 -18 9 1579 475 190 0 0 chr5 130356793 130356872 -22180387 - MT2B LTR ERVL -391 210 132 9 1579 287 232 137 0 chr5 130356796 130356891 -22180368 - ORR1A3-int LTR MaLR -1185 778 671 9 1579 311 157 0 0 chr5 130356889 130356940 -22180319 + URR1B DNA MER1_type 175 225 0 9 1579 576 225 0 0 chr5 130357869 130357980 -22179279 + URR1A DNA MER1_type 48 158 -68 9 1579 1125 43 0 0 chr5 130357973 130358112 -22179147 + B1_Mus1 SINE Alu 10 148 0 9 1579 281 159 0 0 chr5 130358124 130358168 -22179091 + URR1A DNA MER1_type 137 180 -46 9 1579 383 194 10 0 chr5 130358863 130358961 -22178298 + (TA)n Simple_repeat Simple_repeat 2 100 0 9 1579 212 154 0 0 chr5 130359073 130359112 -22178147 + A-rich Low_complexity Low_complexity 4 42 0 9 1579 345 288 52 56 chr5 130359176 130359296 -22177963 + B1F SINE Alu 2 117 -3 9 1579 223 273 182 0 chr5 130359316 130359382 -22177877 + PB1D10 SINE Alu 33 110 -7 9 1579 646 301 43 19 chr5 130359529 130359739 -22177520 - B4A SINE B4 -50 242 28 9 1579 1284 87 21 21 chr5 130360348 130360537 -22176722 - B2_Mm2 SINE B2 -5 190 2 9 1579 304 148 147 74 chr5 130360893 130360988 -22176271 + RLTR25B LTR ERVK 408 509 -519 9 1579 895 44 9 0 chr5 130360917 130361031 -22176228 + B1_Mus1 SINE Alu 34 148 0 9 1579 350 317 62 0 chr5 130361184 130361329 -22175930 + RSINE1 SINE B4 4 157 -8 9 1579 906 58 16 16 chr5 130361514 130361636 -22175623 + B1_Mus1 SINE Alu 26 147 -1 9 1579 791 61 0 0 chr5 130361653 130361752 -22175507 + B2_Mm2 SINE B2 2 100 -95 9 1579 1235 114 51 0 chr5 130361779 130361955 -22175304 - B2_Mm2 SINE B2 -9 186 2 9 1579 224 196 0 0 chr5 130361955 130362000 -22175259 + A-rich Low_complexity Low_complexity 11 55 0 9 1579 592 193 26 9 chr5 130362025 130362140 -22175119 + PB1D9 SINE Alu 2 118 -2 9 1579 22 0 0 0 chr5 130362611 130362633 -22174626 + AT_rich Low_complexity Low_complexity 1 22 0 9 1579 244 232 119 24 chr5 130362651 130362735 -22174524 + ID_B1 SINE B4 102 193 -31 9 1579 214 234 30 45 chr5 130363459 130363526 -22173733 - PB1D10 SINE Alu -35 82 17 9 1579 1434 89 5 0 chr5 130363803 130363994 -22173265 + B2_Mm1t SINE B2 1 192 -1 9 1579 335 217 0 0 chr5 130364261 130364321 -22172938 + URR1B DNA MER1_type 166 225 0 9 1579 976 146 11 50 chr5 130364867 130365047 -22172212 + LTRIS5 LTR ERV1 208 380 -67 9 1579 1250 47 0 13 chr5 130365047 130365197 -22172062 + B1_Mus1 SINE Alu 1 148 0 9 1579 761 161 32 204 chr5 130365197 130365300 -22171959 + LTRIS3 LTR ERV1 445 512 0 9 1579 389 88 24 11 chr5 130365376 130365459 -22171800 - B1_Mm SINE Alu 0 147 44 9 1579 213 305 49 84 chr5 130365459 130365519 -22171740 - ID_B1 SINE B4 -1 223 86 9 1579 2943 69 183 27 chr5 130365576 130366023 -22171236 + MURVY-LTR LTR ERV1 1 517 -2 9 1579 529 278 197 5 chr5 130366054 130366242 -22171017 + B4A SINE B4 1 224 -68 9 1579 1636 21 21 0 chr5 130366252 130366441 -22170818 + B2_Mm1a SINE B2 1 193 0 9 1579 818 180 202 0 chr5 130366455 130366633 -22170626 + B3 SINE B2 3 216 0 9 1579 227 208 0 159 chr5 130366644 130366707 -22170552 + B3A SINE B2 27 79 -119 9 1579 605 197 173 0 chr5 130366754 130366881 -22170378 - B1_Mur3 SINE Alu 0 149 1 9 1579 2417 230 9 98 chr5 130366981 130367288 -22169971 - RMER19C LTR ERVK 0 611 316 9 1579 1368 96 11 0 chr5 130367288 130367475 -22169784 + B2_Mm1t SINE B2 1 189 -4 9 1579 2417 230 9 98 chr5 130367475 130367513 -22169746 - RMER19C LTR ERVK -296 315 294 9 1579 2847 50 6 0 chr5 130367513 130367855 -22169404 + ORR1A1 LTR MaLR 3 346 0 9 1579 2417 230 9 98 chr5 130367855 130368179 -22169080 - RMER19C LTR ERVK -318 293 1 9 1579 1100 97 0 0 chr5 130368289 130368433 -22168826 + B1_Mus2 SINE Alu 2 145 -2 9 1579 1650 26 0 20 chr5 130368462 130368658 -22168601 - B2_Mm1t SINE B2 0 193 2 9 1579 219 290 106 39 chr5 130368707 130368811 -22168448 + RSINE1 SINE B4 19 129 -36 9 1579 867 171 7 27 chr5 130368827 130368977 -22168282 + B1_Mus1 SINE Alu 1 147 -1 9 1579 351 0 0 0 chr5 130369553 130369592 -22167667 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1579 1043 122 44 26 chr5 130369622 130369844 -22167415 + B2_Mm2 SINE B2 13 216 0 9 1579 1005 265 48 11 chr5 130370266 130370617 -22166642 + RLTR18-int LTR ERVK 4911 5274 -87 9 1579 258 231 0 152 chr5 130371251 130371343 -22165916 + PB1D10 SINE Alu 5 82 -35 9 1579 198 0 0 0 chr5 130372001 130372023 -22165236 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 9 1579 236 296 86 0 chr5 130372045 130372126 -22165133 - ID_B1 SINE B4 -33 191 104 9 1579 215 227 136 0 chr5 130372184 130372250 -22165009 - RSINE1 SINE B4 -33 132 58 9 1579 531 148 377 30 chr5 130372271 130372438 -22164821 - URR1B DNA MER1_type 0 225 1 9 1579 254 286 137 39 chr5 130372512 130372614 -22164645 - RSINE1 SINE B4 -28 137 26 9 1579 350 240 159 39 chr5 130372698 130372747 -22164512 - CYRA11_Mm Unknown Y-chromosome -242 375 310 9 1579 1405 69 21 0 chr5 130372747 130372935 -22164324 - B2_Mm1t SINE B2 0 193 2 9 1579 350 240 159 39 chr5 130372935 130373067 -22164192 - CYRA11_Mm Unknown Y-chromosome -308 309 172 9 1579 406 221 42 10 chr5 130373159 130373255 -22164004 - B1_Mur2 SINE Alu -23 126 28 9 1579 386 274 99 94 chr5 130373319 130373500 -22163759 - B3A SINE B2 -11 187 6 9 1579 305 47 23 0 chr5 130373621 130373664 -22163595 + (TA)n Simple_repeat Simple_repeat 1 44 0 9 1579 659 174 0 83 chr5 130373734 130373878 -22163381 + B1_Mus1 SINE Alu 4 135 -13 9 1579 393 22 0 0 chr5 130373878 130373924 -22163335 + (CAA)n Simple_repeat Simple_repeat 3 48 0 9 1579 860 229 54 10 chr5 130373927 130374130 -22163129 + B3 SINE B2 1 212 -4 9 1579 1635 42 0 0 chr5 130374141 130374332 -22162927 + B2_Mm1t SINE B2 1 191 -2 9 1579 251 192 22 50 chr5 130374342 130374413 -22162846 + B1F1 SINE Alu 1 71 -46 9 1579 1106 193 121 33 chr5 130374503 130374867 -22162392 + Lx9 LINE L1 7246 7641 -3 9 1579 404 244 4 0 chr5 130374893 130374990 -22162269 - ID_B1 SINE B4 -50 174 81 9 1579 696 303 22 17 chr5 130375367 130375599 -22161660 + B4A SINE B4 28 260 -32 9 1579 1664 31 5 0 chr5 130375651 130375843 -22161416 - B2_Mm1t SINE B2 0 193 1 9 1579 224 211 192 0 chr5 130375852 130375904 -22161355 - B1F SINE Alu -7 113 52 9 1579 245 179 35 35 chr5 130376424 130376482 -22160777 + URR1B DNA MER1_type 5 62 -163 9 1579 887 136 7 28 chr5 130376786 130376930 -22160329 - B1_Mur4 SINE Alu -1 149 9 9 1579 364 241 16 107 chr5 130376824 130376945 -22160314 - MT2B LTR ERVL -337 264 155 9 1579 1136 121 5 27 chr5 130376967 130377134 -22160125 + L1_Mus3 LINE L1 6456 6623 -15 9 1579 1544 43 16 0 chr5 130377134 130377321 -22159938 + B2_Mm2 SINE B2 1 190 -5 9 1579 1136 121 5 27 chr5 130377321 130377340 -22159919 + L1_Mus3 LINE L1 6624 6638 0 9 1579 1262 368 57 52 chr5 130377567 130379375 -22157884 + Charlie24 DNA MER1_type 345 2161 -289 9 1579 641 145 39 46 chr5 130379594 130379724 -22157535 + URR1B DNA MER1_type 72 200 -25 9 1579 214 74 0 0 chr5 130379730 130379757 -22157502 + B1_Mus1 SINE Alu 22 48 -100 9 1579 482 0 17 0 chr5 130379757 130379815 -22157444 + (GGA)n Simple_repeat Simple_repeat 2 60 0 9 1579 190 29 28 56 chr5 130379819 130379855 -22157404 + (GAA)n Simple_repeat Simple_repeat 2 36 0 9 1579 566 235 16 16 chr5 130379873 130379994 -22157265 + B3 SINE B2 93 213 -3 9 1579 649 216 207 17 chr5 130380003 130380182 -22157077 - B3 SINE B2 -2 214 2 9 1579 380 135 293 30 chr5 130380195 130380294 -22156965 - MTC LTR MaLR -296 125 1 9 1579 188 154 19 0 chr5 130380367 130380419 -22156840 + T-rich Low_complexity Low_complexity 3 55 0 9 1579 1155 68 7 0 chr5 130380429 130380576 -22156683 - B1_Mus1 SINE Alu 0 148 1 9 1579 382 18 36 0 chr5 130380733 130380788 -22156471 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 9 1579 1155 58 0 0 chr5 130380788 130380925 -22156334 - B1_Mm SINE Alu -10 137 1 9 1579 553 209 64 0 chr5 130380969 130381079 -22156180 + PB1D9 SINE Alu 2 118 -2 9 1579 985 199 104 16 chr5 130381080 130381354 -22155905 - ORR1D2 LTR MaLR 0 394 102 9 1579 283 157 0 19 chr5 130381332 130381384 -22155875 + B1_Mur1 SINE Alu 99 149 0 9 1579 873 124 65 7 chr5 130381399 130381537 -22155722 + B1_Mur3 SINE Alu 2 147 -2 9 1579 226 333 22 44 chr5 130381720 130381811 -22155448 - RSINE1 SINE B4 -74 91 3 9 1579 258 189 37 4 chr5 130382000 130382070 -22155189 - PB1D9 SINE Alu -7 113 40 9 1579 309 304 46 128 chr5 130382080 130382099 -22155160 - B4 SINE B4 -44 248 188 9 1579 767 180 0 28 chr5 130382099 130382242 -22155017 - B1_Mur2 SINE Alu 0 149 11 9 1579 309 304 46 128 chr5 130382242 130382276 -22154983 - B4 SINE B4 -44 187 69 9 1579 393 330 0 27 chr5 130382324 130382436 -22154823 - PB1D10 SINE Alu 0 117 9 9 1579 588 237 0 42 chr5 130382485 130382624 -22154635 - B1_Mur1 SINE Alu -1 148 15 9 1579 236 229 115 0 chr5 130382646 130382707 -22154552 + ID4_ SINE ID 2 69 -14 9 1579 525 306 0 0 chr5 130382789 130382910 -22154349 + RSINE1 SINE B4 2 122 -43 9 1579 3520 87 77 2 chr5 130382912 130383395 -22153864 - MURVY-LTR LTR ERV1 0 519 1 9 1579 812 172 207 0 chr5 130383435 130383609 -22153650 - B3 SINE B2 -6 210 1 9 1579 713 318 46 99 chr5 130383656 130384001 -22153258 + MTEa LTR MaLR 45 371 -8 1 1579 497 230 108 23 chr5 130384115 130384244 -22153015 - ID_B1 SINE B4 -84 140 1 1 1579 488 237 8 48 chr5 130384836 130384960 -22152299 - ID_B1 SINE B4 -26 198 80 1 1579 208 186 0 23 chr5 130384960 130385004 -22152255 + T-rich Low_complexity Low_complexity 5 47 0 1 1579 241 330 55 0 chr5 130385006 130385097 -22152162 - B1F SINE Alu -53 96 1 1 1579 217 267 186 10 chr5 130385103 130385205 -22152054 - PB1D7 SINE Alu 0 120 1 1 1579 282 214 111 46 chr5 130385375 130385483 -22151776 + PB1D7 SINE Alu 6 120 0 1 1579 826 210 268 47 chr5 130385493 130385833 -22151426 - MTD LTR MaLR -2 417 3 1 1579 269 258 20 92 chr5 130385833 130385916 -22151343 + ID_B1 SINE B4 82 157 -67 1 1579 609 267 57 26 chr5 130385916 130386108 -22151151 + B3A SINE B2 1 198 0 1 1579 1060 96 7 14 chr5 130386132 130386280 -22150979 + B1_Mus1 SINE Alu 2 148 0 1 1579 228 226 132 0 chr5 130386280 130386333 -22150926 + ID_B1 SINE B4 145 204 -20 1 1579 1192 88 71 4 chr5 130386529 130386726 -22150533 + B2_Mm2 SINE B2 3 216 0 1 1579 347 239 63 91 chr5 130386735 130386878 -22150381 + B1F SINE Alu 10 148 -1 1 1579 515 288 87 33 chr5 130387265 130387448 -22149811 + B4 SINE B4 4 196 -96 1 1579 1235 48 0 0 chr5 130387466 130387613 -22149646 + B1_Mus2 SINE Alu 1 147 0 1 1579 294 29 0 0 chr5 130387729 130387764 -22149495 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1579 189 0 0 0 chr5 130387764 130387785 -22149474 + (CCA)n Simple_repeat Simple_repeat 3 23 0 1 1579 567 204 42 77 chr5 130387891 130388034 -22149225 - B1_Mur2 SINE Alu -11 138 1 1 1579 180 0 0 0 chr5 130388041 130388061 -22149198 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1579 1181 68 0 0 chr5 130388072 130388219 -22149040 - B1_Mus1 SINE Alu 0 148 2 1 1579 519 295 62 48 chr5 130388263 130388473 -22148786 + ID_B1 SINE B4 2 214 -10 1 1579 1117 76 0 7 chr5 130388576 130388722 -22148537 + B1_Mus2 SINE Alu 2 146 -1 1 1579 293 362 8 41 chr5 130388762 130388883 -22148376 - B3A SINE B2 -21 177 61 1 1579 285 270 76 53 chr5 130388975 130389182 -22148077 + MTD LTR MaLR 5 209 -210 1 1579 524 146 124 12 chr5 130389182 130389304 -22147955 + B1_Mur1 SINE Alu 1 132 -17 1 1579 402 211 148 25 chr5 130389335 130389502 -22147757 + MTD LTR MaLR 231 379 0 1 1579 507 250 34 17 chr5 130389696 130389814 -22147445 - PB1D9 SINE Alu 0 120 1 1 1579 213 65 0 0 chr5 130389858 130389889 -22147370 + (CCA)n Simple_repeat Simple_repeat 1 31 0 1 1579 804 146 7 28 chr5 130389894 130390035 -22147224 - B1_Mur4 SINE Alu -12 138 1 1 1579 724 125 12 33 chr5 130390079 130390217 -22147042 - B2_Mm2 SINE B2 -42 156 10 1 1579 720 170 28 21 chr5 130390616 130390760 -22146499 + B1_Mur4 SINE Alu 6 150 0 1 1579 566 252 28 14 chr5 130390841 130390986 -22146273 + RSINE1 SINE B4 3 149 -16 1 1579 267 177 113 0 chr5 130390988 130391050 -22146209 - B1_Mus1 SINE Alu -79 69 1 1 1579 1026 88 0 39 chr5 130391080 130391233 -22146026 + B1_Mus1 SINE Alu 1 147 -1 1 1579 210 91 0 0 chr5 130391246 130391279 -22145980 + (TC)n Simple_repeat Simple_repeat 1 33 0 1 1579 608 142 17 17 chr5 130391311 130391426 -22145833 - B2_Mm2 SINE B2 -80 115 1 1 1579 1209 34 7 0 chr5 130391616 130391762 -22145497 + B1_Mus1 SINE Alu 1 147 -1 1 1579 383 182 19 66 chr5 130392057 130392163 -22145096 - PB1D9 SINE Alu -3 117 17 1 1579 309 274 33 58 chr5 130392419 130392539 -22144720 - PB1D9 SINE Alu -3 117 1 1 1579 690 199 169 35 chr5 130392654 130392697 -22144562 - RMER16 LTR ERVK -41 492 447 1 1579 3269 35 186 11 chr5 130392697 130393133 -22144126 + RLTR1B LTR ERV1 1 512 0 1 1579 690 195 116 56 chr5 130393133 130393383 -22143876 - RMER16 LTR ERVK -87 446 1 1 1579 278 313 0 0 chr5 130393932 130394015 -22143244 + ID4 SINE ID 1 83 0 1 1579 23 0 0 0 chr5 130394072 130394095 -22143164 + AT_rich Low_complexity Low_complexity 1 23 0 1 1579 262 116 0 0 chr5 130394117 130394160 -22143099 + URR1B DNA MER1_type 1 43 -182 1 1579 227 190 17 33 chr5 130394246 130394306 -22142953 + PB1D9 SINE Alu 1 59 -61 1 1579 327 179 0 0 chr5 130394377 130394433 -22142826 + B1_Mm SINE Alu 41 96 -51 1 1579 436 128 130 60 chr5 130394435 130394535 -22142724 - B3 SINE B2 -108 108 2 1 1579 191 114 0 28 chr5 130394539 130394575 -22142684 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1 1579 1021 77 0 53 chr5 130394578 130394728 -22142531 - B1_Mus1 SINE Alu -5 143 2 1 1579 495 262 45 60 chr5 130394729 130394928 -22142331 - B3A SINE B2 -1 197 2 1 1579 409 230 132 23 chr5 130395453 130395582 -22141677 + ID_B1 SINE B4 81 223 -1 1 1579 297 0 0 0 chr5 130395727 130395760 -22141499 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1579 1205 35 0 14 chr5 130395760 130395907 -22141352 - B1_Mus2 SINE Alu -1 146 2 1 1579 1019 215 4 71 chr5 130395977 130396031 -22141228 + URR1B DNA MER1_type 1 48 -177 1 1579 1232 85 96 0 chr5 130396031 130396208 -22141051 + B2_Mm2 SINE B2 2 195 0 1 1579 1019 215 4 71 chr5 130396208 130396393 -22140866 + URR1B DNA MER1_type 49 223 -2 1 1579 364 184 79 97 chr5 130396556 130396653 -22140606 - B1_Mur1 SINE Alu 0 149 54 1 1579 1172 64 116 6 chr5 130396653 130396825 -22140434 - B2_Mm1a SINE B2 -1 192 2 1 1579 364 184 79 97 chr5 130396825 130396841 -22140418 - B1_Mur1 SINE Alu -96 53 38 1 1579 1453 53 11 11 chr5 130396872 130397062 -22140197 + B2_Mm2 SINE B2 2 191 -4 1 1579 574 227 1 0 chr5 130397083 130397206 -22140053 - B1_Mur2 SINE Alu -13 136 13 1 1579 1236 101 31 16 chr5 130397267 130397458 -22139801 + B2_Mm2 SINE B2 2 195 0 1 1579 279 0 0 0 chr5 130397668 130397699 -22139560 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1579 1063 56 0 0 chr5 130397700 130397842 -22139417 - B1_Mm SINE Alu 0 147 6 1 1579 612 221 76 86 chr5 130397918 130398116 -22139143 + B3A SINE B2 2 197 -1 1 1579 971 233 48 0 chr5 130398132 130398338 -22138921 + B3 SINE B2 1 216 0 1 1579 433 244 113 19 chr5 130398359 130398511 -22138748 + B3A SINE B2 48 210 -6 1 1579 1513 69 0 0 chr5 130398517 130398706 -22138553 + B2_Mm1a SINE B2 3 191 -2 1 1579 21 0 0 0 chr5 130398784 130398805 -22138454 + AT_rich Low_complexity Low_complexity 1 21 0 1 1579 313 258 11 53 chr5 130398867 130398959 -22138300 + PB1D10 SINE Alu 1 88 -29 1 1579 1107 239 76 3 chr5 130398959 130399249 -22138010 - MTEb LTR MaLR -2 377 67 1 1579 318 269 101 54 chr5 130399315 130399464 -22137795 + Arthur1 DNA Tip100 2398 2553 -1394 1 1579 252 59 0 0 chr5 130399506 130399540 -22137719 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1579 397 259 0 0 chr5 130399540 130399625 -22137634 - MTEb LTR MaLR -293 86 2 1 1579 306 0 0 0 chr5 130399740 130399774 -22137485 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1579 498 319 0 28 chr5 130399776 130399918 -22137341 - RSINE1 SINE B4 -24 141 4 1 1579 204 245 0 0 chr5 130400031 130400084 -22137175 + (TA)n Simple_repeat Simple_repeat 2 54 0 1 1579 653 193 6 152 chr5 130400168 130400339 -22136920 + B1F1 SINE Alu 1 146 -1 1 1579 1103 82 0 20 chr5 130400362 130400512 -22136747 + B1_Mus1 SINE Alu 1 147 -1 1 1579 891 86 187 24 chr5 130400602 130400768 -22136491 + B2_Mm2 SINE B2 1 193 -2 1 1579 776 207 79 25 chr5 130401139 130401342 -22135917 + B3 SINE B2 2 215 -1 1 1579 180 326 39 39 chr5 130401369 130401430 -22135829 + MIRb SINE MIR 121 185 -83 1 1579 1449 65 32 5 chr5 130401430 130401617 -22135642 + B2_Mm2 SINE B2 1 192 -3 1 1579 180 326 39 39 chr5 130401617 130401657 -22135602 + MIRb SINE MIR 186 221 -47 1 1579 186 71 0 0 chr5 130401717 130401745 -22135514 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1 1579 711 30 40 0 chr5 130401747 130401846 -22135413 - B1_Mus2 SINE Alu 0 147 45 1 1579 338 245 213 14 chr5 130401914 130402055 -22135204 - MTC LTR MaLR 0 421 253 1 1579 1457 186 158 60 chr5 130402055 130402131 -22135128 - RLTR11A LTR ERVK 0 528 457 1 1579 441 0 0 0 chr5 130402131 130402180 -22135079 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1579 1457 186 158 60 chr5 130402180 130402584 -22134675 - RLTR11A LTR ERVK -72 456 3 1 1579 1058 95 0 0 chr5 130402588 130402725 -22134534 + B1_Mus1 SINE Alu 2 138 -10 1 1579 207 0 0 0 chr5 130402725 130402748 -22134511 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1579 857 122 139 13 chr5 130402757 130402915 -22134344 + B2_Mm1a SINE B2 2 179 -14 1 1579 337 65 336 27 chr5 130402963 130403073 -22134186 + B2_Mm2 SINE B2 48 191 -4 1 1579 475 254 17 0 chr5 130403089 130403207 -22134052 + B3A SINE B2 1 120 -78 1 1579 779 137 57 14 chr5 130403493 130403634 -22133625 + B1_Mus2 SINE Alu 1 147 0 1 1579 228 212 197 0 chr5 130403666 130403732 -22133527 - Lx8 LINE L1 -11 7462 7384 1 1579 180 0 0 0 chr5 130403753 130403773 -22133486 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1579 279 0 0 0 chr5 130403781 130403812 -22133447 + (GTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1579 503 272 21 120 chr5 130403821 130404055 -22133204 - ID_B1 SINE B4 -12 212 2 1 1579 859 95 149 219 chr5 130404189 130404265 -22132994 + URR1B DNA MER1_type 1 94 -131 1 1579 1225 54 0 0 chr5 130404265 130404412 -22132847 + B1_Mm SINE Alu 1 147 0 1 1579 859 95 149 219 chr5 130404412 130404470 -22132789 + URR1B DNA MER1_type 95 112 -113 1 1579 1070 93 93 60 chr5 130404470 130404653 -22132606 + B2_Mm2 SINE B2 5 193 -2 1 1579 859 95 149 219 chr5 130404653 130404759 -22132500 + URR1B DNA MER1_type 113 225 0 1 1579 1185 82 0 12 chr5 130404760 130404933 -22132326 - B2_Mm2 SINE B2 -23 172 2 1 1579 446 275 28 14 chr5 130404950 130405094 -22132165 - B1F SINE Alu 0 149 4 1 1579 24 32 0 0 chr5 130405118 130405149 -22132110 + AT_rich Low_complexity Low_complexity 1 31 0 1 1579 876 118 7 0 chr5 130405192 130405327 -22131932 - B1_Mur4 SINE Alu -3 147 12 1 1579 412 252 39 92 chr5 130405195 130405348 -22131911 - B4 SINE B4 -72 220 76 1 1579 864 232 22 62 chr5 130405406 130405631 -22131628 + ID_B1 SINE B4 1 216 -8 1 1579 723 71 0 0 chr5 130405635 130405733 -22131526 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 1 1579 676 176 0 139 chr5 130406292 130406464 -22130795 + B1_Mur4 SINE Alu 2 149 -1 1 1579 504 198 0 10 chr5 130406548 130406650 -22130609 - B1_Mus1 SINE Alu -35 113 13 1 1579 278 239 0 129 chr5 130406562 130406663 -22130596 - MT2B LTR ERVL -347 254 167 1 1579 385 226 10 41 chr5 130406770 130406867 -22130392 - ID_B1 SINE B4 -1 223 130 1 1579 279 0 0 0 chr5 130406875 130406906 -22130353 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 1 1579 1155 55 14 0 chr5 130406906 130407051 -22130208 - B1_Mus2 SINE Alu 0 147 1 1 1579 809 183 0 0 chr5 130407056 130407198 -22130061 - B1_Mur4 SINE Alu -1 149 8 1 1579 298 232 16 118 chr5 130407090 130407217 -22130042 - MT2B LTR ERVL -337 264 151 1 1579 366 276 106 0 chr5 130407346 130407469 -22129790 - L1MA8 LINE L1 -1 6290 6155 1 1579 25 31 0 0 chr5 130407598 130407630 -22129629 + AT_rich Low_complexity Low_complexity 1 32 0 1 1579 770 132 7 68 chr5 130407630 130407776 -22129483 - B1_Mm SINE Alu 0 147 11 1 1579 375 213 37 155 chr5 130407635 130407796 -22129463 - B4 SINE B4 -69 223 82 1 1579 277 247 24 24 chr5 130407792 130407875 -22129384 - PB1D10 SINE Alu -5 112 30 1 1579 777 248 78 15 chr5 130408032 130408237 -22129022 - ID_B1 SINE B4 -1 223 6 1 1579 204 135 0 0 chr5 130408253 130408290 -22128969 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 1 1579 347 213 0 51 chr5 130408291 130408370 -22128889 - ID4 SINE ID -8 75 1 1 1579 233 188 42 0 chr5 130408370 130408418 -22128841 - ZP3AR Satellite Satellite -117 95 46 1 1579 555 304 12 69 chr5 130408470 130408601 -22128658 - RSINE1 SINE B4 0 165 43 1 1579 2202 124 81 81 chr5 130408601 130408904 -22128355 - MTC LTR MaLR -1 420 108 1 1579 1194 74 0 0 chr5 130408904 130409052 -22128207 + B1_Mus1 SINE Alu 1 148 0 1 1579 2202 124 81 81 chr5 130409052 130409168 -22128091 - MTC LTR MaLR -314 107 1 1 1579 555 304 12 69 chr5 130409168 130409209 -22128050 - RSINE1 SINE B4 -123 42 3 1 1579 374 128 35 25 chr5 130409362 130409452 -22127807 - MTEa LTR MaLR -10 349 256 1 1579 4146 124 102 16 chr5 130410217 130410896 -22126363 + RMER19A LTR ERVK 1 737 0 1 1579 1430 94 5 0 chr5 130410923 130411114 -22126145 + B2_Mm1t SINE B2 2 193 0 1 1579 1192 68 0 0 chr5 130411610 130411758 -22125501 - B1_Mus1 SINE Alu 0 148 1 1 1579 1346 67 45 0 chr5 130411771 130411950 -22125309 - B2_Mm2 SINE B2 -7 188 2 1 1579 1382 60 27 11 chr5 130411955 130412139 -22125120 - B2_Mm1a SINE B2 -6 187 1 1 1579 21 57 0 0 chr5 130412139 130412174 -22125085 + AT_rich Low_complexity Low_complexity 1 35 0 1 1579 283 330 21 0 chr5 130412297 130412394 -22124865 - ID_B1 SINE B4 -2 222 124 1 1579 446 241 0 0 chr5 130412419 130412506 -22124753 + PB1D10 SINE Alu 22 108 -9 1 1579 654 187 45 0 chr5 130412538 130412672 -22124587 + B1_Mus2 SINE Alu 6 145 -2 1 1579 261 0 0 0 chr5 130412741 130412770 -22124489 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 1 1579 194 295 217 1 chr5 130412938 130413113 -22124146 - MIR SINE MIR 0 268 57 1 1579 235 161 0 35 chr5 130413350 130413408 -22123851 + GA-rich Low_complexity Low_complexity 3 58 0 1 1579 1278 109 5 37 chr5 130413473 130413664 -22123595 + B2_Mm2 SINE B2 3 187 -8 1 1579 229 290 0 16 chr5 130413741 130413804 -22123455 - PB1D10 SINE Alu -38 79 18 1 1579 807 311 9 0 chr5 130414232 130414454 -22122805 + ID_B1 SINE B4 1 224 0 1 1579 1679 36 0 0 chr5 130414456 130414649 -22122610 + B2_Mm1a SINE B2 1 193 0 1 1579 198 156 0 0 chr5 130414669 130414714 -22122545 + A-rich Low_complexity Low_complexity 1 45 0 1 1579 920 59 92 0 chr5 130415137 130415256 -22122003 - B1_Mus1 SINE Alu -17 131 2 1 1579 1080 80 5 84 chr5 130415362 130415553 -22121706 - B2_Mm1a SINE B2 -7 186 11 1 1579 273 57 0 0 chr5 130415602 130415637 -22121622 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1579 351 60 0 0 chr5 130415637 130415686 -22121573 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 1 1579 289 309 48 0 chr5 130415686 130415770 -22121489 - B3A SINE B2 -30 168 81 1 1579 686 294 60 42 chr5 130415875 130416159 -22121100 + B4A SINE B4 4 292 0 1 1579 222 307 0 104 chr5 130416217 130416294 -22120965 - BC1_Mm scRNA scRNA -14 69 1 1 197 279 322 28 134 chr5 130416364 130416647 -22120612 + MLT1F2 LTR MaLR 305 557 -3 1 1580 287 279 140 36 chr5 130416775 130416968 -22120291 + L4 LINE RTE 1784 1996 -33 1 1580 447 149 0 24 chr5 130417907 130418031 -22119228 + (CGG)n Simple_repeat Simple_repeat 3 123 0 1 1580 28 29 0 0 chr5 130418264 130418299 -22118960 + GC_rich Low_complexity Low_complexity 1 35 0 1 1580 352 266 24 81 chr5 130418871 130418994 -22118265 - PB1 SINE Alu -4 123 8 1 1580 635 211 47 0 chr5 130419781 130419909 -22117350 - RSINE1 SINE B4 -30 135 2 1 1580 1230 54 0 0 chr5 130419979 130420127 -22117132 - B1_Mus1 SINE Alu 0 148 1 1 1580 21 36 0 0 chr5 130420254 130420282 -22116977 + AT_rich Low_complexity Low_complexity 1 28 0 1 1580 1487 73 16 0 chr5 130420296 130420487 -22116772 - B2_Mm2 SINE B2 0 195 2 1 1580 265 262 0 70 chr5 130420690 130420776 -22116483 - PB1D10 SINE Alu -21 96 17 1 1580 268 315 0 0 chr5 130420906 130420979 -22116280 - ID4_ SINE ID -7 76 4 1 1580 555 239 35 0 chr5 130420983 130421096 -22116163 - PB1D9 SINE Alu -2 118 2 1 1580 408 257 23 117 chr5 130421106 130421234 -22116025 - ID_B1 SINE B4 -27 197 82 1 1580 438 305 62 0 chr5 130421328 130421456 -22115803 + B3A SINE B2 1 136 -62 1 1580 1003 188 28 37 chr5 130421479 130421694 -22115565 - B3 SINE B2 -2 214 2 1 1580 209 250 0 0 chr5 130421919 130421963 -22115296 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1580 636 224 28 7 chr5 130422380 130422524 -22114735 + B1_Mus2 SINE Alu 1 147 0 1 1580 387 264 38 0 chr5 130423236 130423342 -22113917 - PB1D10 SINE Alu -6 111 2 1 1580 600 155 389 6 chr5 130423739 130423901 -22113358 - URR1B DNA MER1_type -1 224 1 1 1580 402 232 59 20 chr5 130425009 130425110 -22112149 + PB1D10 SINE Alu 1 105 -12 1 1580 707 169 0 0 chr5 130425401 130425519 -22111740 - B1_Mur4 SINE Alu -14 136 19 1 1580 671 213 8 0 chr5 130425721 130425848 -22111411 + RSINE1 SINE B4 3 130 -35 1 1580 215 308 71 45 chr5 130425985 130426097 -22111162 - PB1D10 SINE Alu -1 116 2 1 1580 265 296 44 36 chr5 130426343 130426480 -22110779 + MIR SINE MIR 88 225 -37 1 1580 207 0 0 0 chr5 130426748 130426771 -22110488 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1580 321 229 190 14 chr5 130426774 130426916 -22110343 - B3 SINE B2 0 216 50 1 1580 374 198 54 21 chr5 130426911 130427004 -22110255 - B1_Mus1 SINE Alu -42 106 11 1 1580 541 218 68 34 chr5 130426929 130427076 -22110183 - ID_B1 SINE B4 -55 169 18 1 1580 985 81 81 0 chr5 130427090 130427226 -22110033 - B1_Mus2 SINE Alu 0 147 1 1 1580 189 0 0 0 chr5 130427257 130427278 -22109981 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1580 216 0 0 0 chr5 130427342 130427366 -22109893 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 1 1580 582 214 0 162 chr5 130427426 130427599 -22109660 - B1_Mur1 SINE Alu 0 149 5 1 1580 623 238 20 20 chr5 130427808 130427954 -22109305 + B1_Mus2 SINE Alu 2 147 0 1 1580 297 167 0 0 chr5 130428080 130428134 -22109125 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1580 534 162 171 0 chr5 130428711 130428828 -22108431 - B1_Mur3 SINE Alu -5 144 8 1 1580 1670 47 0 0 chr5 130428847 130429040 -22108219 - B2_Mm1t SINE B2 0 193 1 1 1580 462 229 120 40 chr5 130429202 130429352 -22107907 - B4A SINE B4 0 292 131 1 1580 217 284 0 82 chr5 130429938 130430011 -22107248 - B1F SINE Alu -10 139 73 1 1580 696 217 101 21 chr5 130430053 130430241 -22107018 - B3 SINE B2 -10 206 4 1 1580 295 349 132 3 chr5 130430989 130431291 -22105968 + L2 LINE L2 2137 2477 -942 1 1580 261 0 0 0 chr5 130431672 130431701 -22105558 + (TA)n Simple_repeat Simple_repeat 2 30 0 1 1580 186 43 0 0 chr5 130431705 130431728 -22105531 + (CCCCCT)n Simple_repeat Simple_repeat 5 27 0 1 1580 270 0 0 0 chr5 130431987 130432017 -22105242 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1580 558 43 0 0 chr5 130432017 130432085 -22105174 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1580 209 300 0 0 chr5 130432085 130432135 -22105124 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 1 1580 204 312 17 28 chr5 130432484 130432662 -22104597 + A-rich Low_complexity Low_complexity 1 176 0 1 1580 25 0 0 0 chr5 130432799 130432824 -22104435 + AT_rich Low_complexity Low_complexity 1 25 0 1 1580 213 114 0 28 chr5 130433044 130433080 -22104179 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1580 327 157 171 0 chr5 130433085 130433155 -22104104 - B1_Mur1 SINE Alu -13 136 55 1 1580 740 219 52 0 chr5 130433291 130433446 -22103813 - B3 SINE B2 -27 189 27 1 1580 241 290 0 0 chr5 130433446 130433515 -22103744 - L1M5 LINE L1 -487 5753 5685 1 1580 186 43 0 0 chr5 130433629 130433652 -22103607 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 1 1580 950 131 7 0 chr5 130433652 130433797 -22103462 - B1_Mur4 SINE Alu -4 146 1 1 1580 207 162 0 0 chr5 130433872 130433909 -22103350 + (TCCA)n Simple_repeat Simple_repeat 3 39 0 1 1580 350 240 0 0 chr5 130433913 130433988 -22103271 - B3A SINE B2 -123 75 1 1 1580 1188 61 0 0 chr5 130434016 130434163 -22103096 - B1_Mus1 SINE Alu 0 148 2 1 1580 629 260 150 6 chr5 130434171 130434531 -22102728 - L1ME3A LINE L1 -205 5968 5545 1 1580 484 295 29 19 chr5 130434533 130434790 -22102469 - L1ME3A LINE L1 -736 5437 5173 1 1580 396 0 0 0 chr5 130434791 130434835 -22102424 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1580 320 274 14 0 chr5 130434835 130434908 -22102351 - ID SINE ID -146 78 5 1 1580 367 224 137 46 chr5 130434910 130435041 -22102218 - B1F SINE Alu -2 147 5 1 1580 335 209 151 0 chr5 130435039 130435125 -22102134 - ID_B1 SINE B4 -4 220 122 1 1580 201 147 0 0 chr5 130435125 130435159 -22102100 + (TCC)n Simple_repeat Simple_repeat 3 36 0 1 1580 556 261 44 13 chr5 130435227 130435386 -22101873 - RSINE1 SINE B4 0 165 2 1 1580 23 0 0 0 chr5 130435573 130435596 -22101663 + AT_rich Low_complexity Low_complexity 1 23 0 1 1580 1227 48 0 0 chr5 130435596 130435743 -22101516 - B1_Mus2 SINE Alu 0 147 1 1 1580 1594 26 16 5 chr5 130435768 130435959 -22101300 + B2_Mm2 SINE B2 1 193 -2 1 1580 971 186 35 0 chr5 130435991 130436163 -22101096 - B3A SINE B2 -18 180 3 1 1580 272 231 29 71 chr5 130436178 130436248 -22101011 - PB1D10 SINE Alu -32 85 19 1 1580 636 232 7 21 chr5 130436274 130436419 -22100840 - B1_Mur2 SINE Alu -6 143 1 1 1580 236 260 123 0 chr5 130436658 130436731 -22100528 + Charlie1b DNA MER1_type 6 87 -436 1 1580 1089 182 109 39 chr5 130436753 130437010 -22100249 - MTD LTR MaLR -46 373 99 1 1580 851 203 36 18 chr5 130437014 130437235 -22100024 - MTC-int LTR MaLR -797 461 237 1 1580 517 238 13 83 chr5 130437223 130437379 -22099880 + B3A SINE B2 52 196 -2 1 1580 786 75 217 0 chr5 130437422 130437542 -22099717 + B1_Mus2 SINE Alu 2 147 0 1 1580 204 40 0 0 chr5 130437542 130437567 -22099692 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1580 799 151 19 52 chr5 130437704 130437858 -22099401 - B1_Mur4 SINE Alu 0 150 2 1 1580 186 43 0 0 chr5 130437861 130437884 -22099375 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 1 1580 631 189 15 44 chr5 130437948 130438119 -22099140 - B3 SINE B2 -6 189 31 1 1580 461 215 108 0 chr5 130438256 130438349 -22098910 - PB1 SINE Alu -2 125 23 1 1580 814 182 13 7 chr5 130439046 130439195 -22098064 + B1_Mur4 SINE Alu 1 150 0 1 1580 500 264 0 26 chr5 130439214 130439327 -22097932 + PB1D7 SINE Alu 3 112 -8 1 1580 453 103 0 0 chr5 130439340 130439408 -22097851 + (GGA)n Simple_repeat Simple_repeat 3 70 0 1 1580 431 200 70 0 chr5 130439457 130439557 -22097702 + ID_B1 SINE B4 117 223 -1 1 1580 240 241 72 10 chr5 130439667 130439777 -22097482 - B1F2 SINE Alu 0 120 1 1 1580 371 246 23 123 chr5 130440398 130440528 -22096731 - B1F1 SINE Alu 0 117 1 1 1580 825 130 173 0 chr5 130440627 130440789 -22096470 + B2_Mm2 SINE B2 1 190 -5 1 1580 482 170 29 20 chr5 130440827 130440929 -22096330 + B1_Mus2 SINE Alu 45 147 0 1 1580 641 274 190 12 chr5 130441323 130441631 -22095628 - MTE2b LTR MaLR 0 421 21 1 1580 531 216 100 33 chr5 130441670 130441790 -22095469 + RSINE1 SINE B4 1 128 -37 1 1580 302 296 56 0 chr5 130441848 130441956 -22095303 + PB1D7 SINE Alu 1 114 -6 1 1580 327 315 243 26 chr5 130442137 130442750 -22094509 + L1MEc LINE L1 142 887 -5513 1 1580 225 0 0 0 chr5 130442793 130442818 -22094441 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1 1580 237 330 16 107 chr5 130443227 130443349 -22093910 - PB1D10 SINE Alu -4 113 3 1 1580 22 35 0 0 chr5 130443446 130443475 -22093784 + AT_rich Low_complexity Low_complexity 1 29 0 1 1580 670 291 27 54 chr5 130443447 130443669 -22093590 - B3 SINE B2 0 216 1 1 1580 180 0 0 0 chr5 130443706 130443726 -22093533 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1580 423 0 0 0 chr5 130443741 130443788 -22093471 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1580 768 187 0 36 chr5 130443788 130443919 -22093340 - B1_Mur3 SINE Alu -9 140 14 1 1580 360 215 70 70 chr5 130444006 130444106 -22093153 + PB1 SINE Alu 12 111 -16 1 1580 1156 89 0 0 chr5 130444185 130444331 -22092928 + B1_Mus1 SINE Alu 2 147 -1 1 1580 506 221 40 16 chr5 130444992 130445116 -22092143 + B4A SINE B4 165 291 -1 1 1580 24 67 0 0 chr5 130445353 130445398 -22091861 + AT_rich Low_complexity Low_complexity 1 45 0 1 1580 694 232 18 41 chr5 130445559 130445730 -22091529 + B3 SINE B2 47 213 -3 1 1580 243 0 0 0 chr5 130445730 130445757 -22091502 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1 1580 1207 22 0 0 chr5 130445757 130445892 -22091367 - B1_Mus1 SINE Alu -12 136 2 1 1580 704 271 61 61 chr5 130445924 130446203 -22091056 + B4 SINE B4 1 279 -13 1 1580 333 316 152 13 chr5 130446707 130447009 -22090250 - Charlie10 DNA MER1_type -537 2285 1942 1 1580 497 256 42 8 chr5 130447113 130447231 -22090028 - RSINE1 SINE B4 -18 147 26 1 1580 229 285 89 133 chr5 130447359 130447405 -22089854 - B4 SINE B4 -26 266 173 1 1580 501 218 47 101 chr5 130447405 130447553 -22089706 - B1_Mur2 SINE Alu 0 149 10 1 1580 229 285 89 133 chr5 130447553 130447630 -22089629 - B4 SINE B4 -26 172 8 1 1580 728 322 43 29 chr5 130447604 130447882 -22089377 - MT2A LTR ERVL -105 428 147 1 1580 372 170 82 31 chr5 130448056 130448153 -22089106 - PB1D9 SINE Alu 0 120 19 1 1580 255 234 47 58 chr5 130448191 130448277 -22088982 + RLTR25A LTR ERVK 497 581 -522 1 1580 516 129 113 41 chr5 130448213 130448310 -22088949 + B1_Mur3 SINE Alu 46 149 0 1 1580 405 276 121 8 chr5 130448378 130448502 -22088757 + B1F1 SINE Alu 7 144 -5 1 1580 473 262 15 37 chr5 130448532 130448667 -22088592 + B1_Mur1 SINE Alu 2 133 -16 1 1580 818 50 0 0 chr5 130448719 130448819 -22088440 + B1_Mm SINE Alu 38 137 -10 1 1580 243 0 0 0 chr5 130448833 130448860 -22088399 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 1 1580 423 221 39 0 chr5 130448921 130448998 -22088261 + B4A SINE B4 6 85 -207 1 1580 211 298 18 0 chr5 130449211 130449268 -22087991 - ID_B1 SINE B4 -85 139 82 1 1580 1124 50 0 0 chr5 130449593 130449732 -22087527 + B1_Mus1 SINE Alu 10 148 0 1 1580 201 74 0 0 chr5 130449732 130449759 -22087500 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1580 663 228 0 32 chr5 130449863 130450017 -22087242 + B1F SINE Alu 1 149 0 1 1580 282 29 0 0 chr5 130450088 130450123 -22087136 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1580 285 342 87 72 chr5 130450179 130450199 -22087060 - B3A SINE B2 0 198 1 1 1580 623 281 0 86 chr5 130450199 130450374 -22086885 - RSINE1 SINE B4 -4 161 2 1 1580 394 242 127 11 chr5 130450412 130450535 -22086724 - B4A SINE B4 -151 141 8 1 1580 555 329 188 21 chr5 130450873 130451351 -22085908 + L2 LINE L2 2284 2841 -578 1 1580 817 178 22 0 chr5 130451351 130451486 -22085773 - B1_Mur1 SINE Alu -6 143 6 1 1580 21 0 0 0 chr5 130451489 130451510 -22085749 + AT_rich Low_complexity Low_complexity 1 21 0 1 1580 985 252 0 24 chr5 130451527 130451738 -22085521 - B3 SINE B2 -10 206 1 1 1580 510 224 147 105 chr5 130451744 130451934 -22085325 - B3A SINE B2 0 198 1 1 1580 367 233 43 22 chr5 130451943 130452035 -22085224 - PB1D10 SINE Alu 0 117 24 1 1580 349 318 0 23 chr5 130452062 130452084 -22085175 + B4A SINE B4 66 85 -207 1 1580 623 252 44 0 chr5 130452084 130452219 -22085040 + B1_Mur1 SINE Alu 1 141 -8 1 1580 569 269 40 7 chr5 130452319 130452469 -22084790 - RSINE1 SINE B4 -8 157 3 1 1580 712 212 7 7 chr5 130452755 130452902 -22084357 - B1F SINE Alu -2 147 1 1 1580 317 135 90 51 chr5 130452906 130452984 -22084275 + MER5A1 DNA MER1_type 56 136 -30 1 1580 407 304 94 12 chr5 130453912 130454072 -22083187 + MER20 DNA MER1_type 42 214 -5 1 1580 228 272 12 47 chr5 130456760 130456845 -22080414 - ID4 SINE ID 0 83 2 1 1580 380 299 47 0 chr5 130457276 130457383 -22079876 - PB1D10 SINE Alu 0 117 6 1 1580 452 62 16 0 chr5 130457487 130457551 -22079708 + (TC)n Simple_repeat Simple_repeat 2 66 0 1 1580 230 239 115 42 chr5 130457568 130457664 -22079595 + Charlie13a DNA Charlie 121 223 -1291 1 1580 204 40 0 0 chr5 130460328 130460353 -22076906 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1 1580 669 239 0 22 chr5 130460438 130460575 -22076684 + ID_B1 SINE B4 88 221 -3 1 1580 746 194 14 28 chr5 130460783 130460926 -22076333 + B1_Mur2 SINE Alu 2 142 -7 1 1580 621 182 16 62 chr5 130461280 130461409 -22075850 - B1F SINE Alu 0 149 27 1 1580 792 221 66 35 chr5 130461469 130461666 -22075593 + B3 SINE B2 1 203 -13 1 1580 455 244 17 42 chr5 130461781 130461901 -22075358 + PB1D10 SINE Alu 1 117 0 1 1580 692 164 26 0 chr5 130462773 130462889 -22074370 + B3 SINE B2 1 119 -97 1 1580 629 189 89 8 chr5 130462979 130463102 -22074157 + B1_Mur2 SINE Alu 10 142 -7 1 1580 412 222 21 53 chr5 130463116 130463211 -22074048 + B3A SINE B2 28 119 -79 1 1580 313 286 154 31 chr5 130463321 130463335 -22073924 + B1_Mus1 SINE Alu 1 146 -2 1 1580 499 241 129 0 chr5 130463335 130463451 -22073808 + ID_B1 SINE B4 91 221 -3 1 1580 842 240 9 84 chr5 130463452 130463482 -22073777 + B3 SINE B2 9 28 -188 1 1580 1288 27 0 0 chr5 130463482 130463630 -22073629 + B1_Mus1 SINE Alu 1 148 0 1 1580 842 240 9 84 chr5 130463630 130463813 -22073446 + B3 SINE B2 29 206 -10 1 1580 694 255 43 18 chr5 130464147 130464311 -22072948 + B3 SINE B2 39 206 -10 1 1580 578 150 272 9 chr5 130464448 130464562 -22072697 - B1_Mus2 SINE Alu -3 144 1 1 1580 861 142 15 0 chr5 130464710 130464844 -22072415 + B1_Mur4 SINE Alu 6 141 -9 1 1580 805 255 18 28 chr5 130464894 130465112 -22072147 - B3 SINE B2 0 216 1 1 1580 364 335 26 23 chr5 130465588 130465738 -22071521 + RSINE1 SINE B4 2 159 -133 1 1580 213 195 0 0 chr5 130465767 130465808 -22071451 - B4 SINE B4 -251 41 1 1 1580 687 132 53 30 chr5 130466196 130466329 -22070930 + B1_Mur4 SINE Alu 2 137 -13 1 1580 388 196 118 11 chr5 130466347 130466440 -22070819 + PB1D9 SINE Alu 11 113 -7 1 1580 934 137 0 20 chr5 130466467 130466616 -22070643 + B1_Mur4 SINE Alu 5 150 0 1 1580 378 340 130 19 chr5 130466677 130466884 -22070375 - B4A SINE B4 -39 253 24 1 1580 774 177 0 23 chr5 130467100 130467233 -22070026 + B3 SINE B2 1 130 -86 1 1580 396 0 0 0 chr5 130467267 130467311 -22069948 + (CATA)n Simple_repeat Simple_repeat 1 44 0 1 1580 513 311 62 6 chr5 130467328 130467490 -22069769 + B3A SINE B2 27 197 -1 1 1580 437 292 70 124 chr5 130467569 130467581 -22069678 - B4A SINE B4 -49 243 233 1 1580 1387 77 11 0 chr5 130467581 130467764 -22069495 + B2_Mm1t SINE B2 2 186 -7 1 1580 437 292 70 124 chr5 130467764 130467993 -22069266 - B4A SINE B4 -60 232 15 1 1580 1664 37 0 0 chr5 130468094 130468284 -22068975 - B2_Mm1a SINE B2 -1 192 3 1 1580 276 179 88 18 chr5 130468298 130468355 -22068904 + MER3 DNA MER1_type 29 89 -120 1 1580 496 242 143 7 chr5 130468323 130468477 -22068782 - MER3 DNA MER1_type -10 199 25 1 1580 704 299 84 5 chr5 130468518 130468720 -22068539 - ID_B1 SINE B4 0 224 7 1 1580 792 250 26 5 chr5 130468759 130468948 -22068311 - B3A SINE B2 -4 194 2 1 1580 223 250 132 0 chr5 130468977 130469053 -22068206 + PB1D7 SINE Alu 2 87 -33 1 1580 768 296 9 18 chr5 130469752 130469972 -22067287 - ID_B1 SINE B4 0 224 7 1 1580 227 340 96 34 chr5 130469931 130469996 -22067263 - ZP3AR Satellite Satellite -17 195 44 1 1580 252 346 0 0 chr5 130469996 130470074 -22067185 - ID4 SINE ID -5 78 1 1 1580 287 169 32 0 chr5 130470189 130470252 -22067007 + B3 SINE B2 1 72 -123 1 1580 24 0 0 0 chr5 130470304 130470328 -22066931 + AT_rich Low_complexity Low_complexity 1 24 0 1 1580 1147 69 14 0 chr5 130470700 130470845 -22066414 - B1_Mm SINE Alu 0 147 1 1 1580 24 103 0 0 chr5 130470855 130470942 -22066317 + AT_rich Low_complexity Low_complexity 1 87 0 1 1580 450 261 95 9 chr5 130470969 130471085 -22066174 - B3A SINE B2 -65 133 8 1 1580 793 152 177 71 chr5 130472058 130472256 -22065003 + URR1B DNA MER1_type 2 220 -5 1 1580 381 192 0 49 chr5 130472347 130472429 -22064830 + ID4 SINE ID 3 80 -3 1 1580 1190 118 0 17 chr5 130472464 130472645 -22064614 + B2_Mm2 SINE B2 1 178 -17 1 1580 420 77 0 0 chr5 130472698 130472763 -22064496 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 1 1580 594 250 7 49 chr5 130472764 130472907 -22064352 + ID_B1 SINE B4 85 221 -3 1 1580 467 287 139 0 chr5 130472911 130473040 -22064219 + RSINE1 SINE B4 2 148 -17 1 1580 392 298 0 9 chr5 130473085 130473190 -22064069 + PB1D7 SINE Alu 10 113 -7 1 1580 839 154 0 0 chr5 130473225 130473361 -22063898 + B1_Mur4 SINE Alu 2 137 -13 1 1580 190 0 67 0 chr5 130473363 130473393 -22063866 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1 1580 680 187 57 0 chr5 130474515 130474638 -22062621 - ID_B1 SINE B4 0 224 95 1 1580 214 50 0 48 chr5 130474646 130474688 -22062571 + (GTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1580 752 168 46 0 chr5 130474690 130474821 -22062438 - B1_Mur4 SINE Alu -13 137 1 1 1580 467 149 0 0 chr5 130474868 130474942 -22062317 - B1_Mur2 SINE Alu -3 146 73 1 1580 279 250 19 94 chr5 130474871 130474977 -22062282 - ID_B1 SINE B4 -6 218 121 1 1580 369 0 0 0 chr5 130475995 130476036 -22061223 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1580 670 268 13 58 chr5 130476839 130477065 -22060194 + ID_B1 SINE B4 4 219 -5 1 1580 205 250 64 77 chr5 130477065 130477143 -22060116 + L2b LINE L2 3279 3355 -20 1 1580 318 267 112 19 chr5 130477449 130477556 -22059703 + PB1D7 SINE Alu 1 117 -3 1 1580 573 234 72 14 chr5 130477560 130477699 -22059560 + RSINE1 SINE B4 1 147 -18 1 1580 239 270 0 101 chr5 130478070 130478169 -22059090 + PB1D7 SINE Alu 32 120 0 1 1580 211 237 148 33 chr5 130478170 130478231 -22059028 + ID4_ SINE ID 16 83 0 1 1580 606 109 88 10 chr5 130479429 130479531 -22057728 - B1_Mur4 SINE Alu -29 121 12 1 1580 507 228 84 42 chr5 130479674 130479816 -22057443 - B1_Mus1 SINE Alu 0 148 1 1 1580 1106 185 19 19 chr5 130480152 130480361 -22056898 + B3 SINE B2 2 210 -6 1 1580 894 223 48 0 chr5 130480490 130480678 -22056581 - B3 SINE B2 -19 197 1 1 1580 542 259 49 7 chr5 130480721 130480865 -22056394 - RSINE1 SINE B4 -14 151 2 1 1580 613 289 58 21 chr5 130480883 130481074 -22056185 - B4A SINE B4 -92 200 3 1 1580 360 240 88 62 chr5 130481258 130481418 -22055841 - RLTR43A LTR ERVK 0 364 249 1 1580 1014 109 7 26 chr5 130481593 130481744 -22055515 - B1_Mus1 SINE Alu 0 148 1 1 1580 1130 97 0 0 chr5 130482589 130482743 -22054516 + B2_Mm2 SINE B2 1 154 -41 1 1580 302 0 0 26 chr5 130482744 130482783 -22054476 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 1 1580 984 102 0 28 chr5 130482870 130483012 -22054247 - B1_Mm SINE Alu 0 147 10 1 1580 283 164 0 52 chr5 130483154 130483212 -22054047 + RLTR42-int LTR ERVK 1032 1086 -4436 1 1580 563 126 0 0 chr5 130483212 130483307 -22053952 + Lx LINE L1 6559 6653 -1 1 1580 830 164 27 11 chr5 130483345 130483533 -22053726 - B2_Mm2 SINE B2 -4 189 1 1 1580 311 192 96 0 chr5 130483533 130483606 -22053653 + RLTR42-int LTR ERVK 2049 2128 -3394 1 1580 929 152 0 7 chr5 130483627 130483773 -22053486 + B1_Mm SINE Alu 2 146 -1 1 1580 576 233 0 16 chr5 130484002 130484124 -22053135 - PB1D9 SINE Alu 0 120 1 1 1580 180 0 0 0 chr5 130484129 130484149 -22053110 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1580 431 263 68 43 chr5 130484149 130484312 -22052947 - ID_B1 SINE B4 0 224 58 1 1580 591 234 69 38 chr5 130484316 130484476 -22052783 + B3 SINE B2 52 216 0 1 1580 281 229 21 108 chr5 130484594 130484627 -22052632 - B1F2 SINE Alu -27 122 95 1 1580 201 121 0 0 chr5 130484627 130484660 -22052599 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1580 297 207 35 17 chr5 130484660 130484727 -22052532 - B1F1 SINE Alu -55 94 27 1 1580 1325 102 37 0 chr5 130484727 130484914 -22052345 - B2_Mm2 SINE B2 0 195 2 1 1580 296 315 56 0 chr5 130484914 130484939 -22052320 - B1F SINE Alu -123 26 2 1 1580 1143 75 7 0 chr5 130485225 130485372 -22051887 - B1_Mus1 SINE Alu 0 148 1 1 1580 1253 80 11 6 chr5 130485377 130485553 -22051706 - B2_Mm2 SINE B2 -8 187 11 1 1580 270 353 0 0 chr5 130485478 130485563 -22051696 - RSINE1 SINE B4 -79 86 2 1 1580 216 0 0 0 chr5 130485613 130485637 -22051622 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1580 633 212 83 0 chr5 130485641 130485773 -22051486 - B3 SINE B2 -71 145 3 1 1580 237 324 136 18 chr5 130485824 130485934 -22051325 - RSINE1 SINE B4 -15 150 28 1 1580 706 245 66 50 chr5 130485967 130486165 -22051094 + ID_B1 SINE B4 16 216 -8 1 1580 212 0 36 0 chr5 130486584 130486612 -22050647 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1580 1137 65 0 0 chr5 130486612 130486750 -22050509 - B1_Mus1 SINE Alu -9 139 2 1 1580 935 129 14 0 chr5 130486779 130486919 -22050340 - B1_Mur4 SINE Alu -6 144 3 1 1580 717 208 97 11 chr5 130486949 130487124 -22050135 - B3A SINE B2 -3 195 6 1 1580 347 186 53 142 chr5 130488163 130488276 -22048983 + MT2B LTR ERVL 162 264 -337 1 1580 781 88 23 31 chr5 130488180 130488309 -22048950 + B1_Mur4 SINE Alu 22 149 -1 1 1580 246 105 0 0 chr5 130488311 130488349 -22048910 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 1580 648 182 0 32 chr5 130489443 130489568 -22047691 - RSINE1 SINE B4 -42 123 3 1 1580 780 271 37 9 chr5 130489598 130489814 -22047445 - ID_B1 SINE B4 -1 223 2 1 1580 911 169 139 7 chr5 130490125 130490435 -22046824 + RLTR18B LTR ERVK 13 363 -149 1 1580 715 249 46 10 chr5 130490851 130491046 -22046213 - B3 SINE B2 -12 204 3 1 1580 850 185 39 69 chr5 130491059 130491090 -22046169 - B3A SINE B2 0 198 178 1 1580 282 95 0 0 chr5 130491090 130491132 -22046127 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1580 850 185 39 69 chr5 130491132 130491303 -22045956 - B3A SINE B2 -21 177 2 1 1580 229 42 0 130 chr5 130491312 130491366 -22045893 - B2_Mm2 SINE B2 -6 189 143 1 1580 1399 67 6 6 chr5 130491366 130491545 -22045714 - B2_Mm2 SINE B2 -16 179 1 1 1580 315 310 117 61 chr5 130491597 130491793 -22045466 - Lx8 LINE L1 -17 7456 7250 1 1580 466 252 70 16 chr5 130492441 130492570 -22044689 + B1F SINE Alu 5 140 -9 1 1580 537 246 103 0 chr5 130492585 130492711 -22044548 + ID_B1 SINE B4 84 222 -2 1 1580 201 213 0 0 chr5 130492727 130492774 -22044485 + GA-rich Low_complexity Low_complexity 3 49 0 1 1580 242 223 0 0 chr5 130492774 130492827 -22044432 + B1F1 SINE Alu 53 108 -41 1 1580 273 94 94 0 chr5 130492975 130493039 -22044220 + (CGGGA)n Simple_repeat Simple_repeat 2 71 0 1 1580 802 266 14 19 chr5 130493583 130493794 -22043465 + B3 SINE B2 1 210 -6 1 1580 737 165 188 55 chr5 130494998 130495193 -22042066 + B3 SINE B2 7 216 0 1 1580 413 200 53 79 chr5 130495279 130495393 -22041866 + ZP3AR Satellite Satellite 22 132 -80 1 1580 251 284 15 0 chr5 130495363 130495430 -22041829 + tRNA-Ala-GCY_ tRNA tRNA 1 68 -7 1 1580 182 292 0 77 chr5 130495808 130495860 -22041399 - MIRb SINE MIR -103 165 118 1 1580 973 95 22 7 chr5 130496037 130496175 -22041084 - B1_Mur4 SINE Alu -6 144 5 1 1580 193 348 33 11 chr5 130496453 130496543 -22040716 + MIR SINE MIR 89 180 -82 1 1580 1129 153 41 31 chr5 130496543 130496739 -22040520 - URR1B DNA MER1_type -23 202 5 1 1580 360 0 0 0 chr5 130496840 130496880 -22040379 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1580 233 143 0 243 chr5 130496911 130496985 -22040274 - B4A SINE B4 -42 250 195 1 1580 488 262 19 106 chr5 130496960 130497144 -22040115 - B1F2 SINE Alu -8 141 5 1 1580 294 175 159 0 chr5 130497141 130497204 -22040055 - B4A SINE B4 -71 221 149 1 1580 294 254 45 0 chr5 130497216 130497283 -22039976 - B4 SINE B4 -221 71 2 1 1580 236 338 14 0 chr5 130497784 130497855 -22039404 - ID4_ SINE ID -11 72 1 1 1580 397 247 12 0 chr5 130497821 130497906 -22039353 - ZP3AR Satellite Satellite -82 130 45 1 1580 336 202 6 14 chr5 130498063 130498139 -22039120 + B1F2 SINE Alu 1 73 -76 1 1580 833 158 7 0 chr5 130498161 130498300 -22038959 - B1_Mur4 SINE Alu -1 149 10 1 1580 254 275 316 0 chr5 130498966 130499079 -22038180 + RSINE1 SINE B4 8 156 -9 1 1580 234 0 0 0 chr5 130499101 130499127 -22038132 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1580 521 275 22 0 chr5 130499142 130499280 -22037979 + B1F SINE Alu 9 149 0 1 1580 413 210 246 30 chr5 130499283 130499450 -22037809 + B3 SINE B2 1 203 -13 1 1580 814 111 88 7 chr5 130499484 130499620 -22037639 + B1_Mur3 SINE Alu 2 148 -1 1 1580 225 184 0 0 chr5 130499622 130499671 -22037588 + A-rich Low_complexity Low_complexity 1 49 0 1 1580 386 175 76 36 chr5 130500403 130500495 -22036764 + PB1D7 SINE Alu 17 112 -8 1 1580 362 323 10 0 chr5 130500630 130500726 -22036533 + B1F SINE Alu 1 97 -52 2 1580 562 213 78 8 chr5 130500727 130500855 -22036404 + ID_B1 SINE B4 88 224 0 3 1580 218 272 23 69 chr5 130500936 130501000 -22036259 + 7SLRNA srpRNA srpRNA 12 72 -242 4 1580 317 291 107 61 chr5 130501000 130501263 -22035996 + B4 SINE B4 2 276 -16 5 1580 218 272 23 69 chr5 130501263 130501285 -22035974 + 7SLRNA srpRNA srpRNA 73 93 -221 4 1580 701 304 19 0 chr5 130501332 130501490 -22035769 + RSINE1 SINE B4 2 162 -3 6 1580 796 269 0 16 chr5 130501756 130501941 -22035318 - B3 SINE B2 -34 182 1 7 1580 1176 62 0 46 chr5 130502162 130502315 -22034944 + B1_Mus2 SINE Alu 2 147 0 8 1580 471 302 119 0 chr5 130502338 130502497 -22034762 + ZP3AR Satellite Satellite 3 180 -32 9 1580 756 286 30 47 chr5 130502614 130502857 -22034402 + ID_B1 SINE B4 5 243 -49 1 1580 198 0 0 0 chr5 130502870 130502892 -22034367 + (TC)n Simple_repeat Simple_repeat 2 23 0 1 1580 240 377 13 33 chr5 130502968 130503119 -22034140 - MIRb SINE MIR -15 253 106 1 1580 584 168 8 34 chr5 130503356 130503473 -22033786 + ID_B1 SINE B4 111 224 0 1 1580 236 247 148 40 chr5 130503799 130503900 -22033359 + L2c LINE L2 3274 3385 -2 1 1580 24 32 0 0 chr5 130503990 130504021 -22033238 + AT_rich Low_complexity Low_complexity 1 31 0 1 1580 279 0 0 0 chr5 130504053 130504084 -22033175 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1580 1033 78 7 47 chr5 130504119 130504267 -22032992 - B1_Mus2 SINE Alu 0 147 6 1 1580 377 129 90 26 chr5 130504321 130504398 -22032861 + PB1D9 SINE Alu 18 108 -12 1 1580 495 226 29 0 chr5 130504433 130504535 -22032724 - B1F SINE Alu -12 137 33 1 1580 257 125 18 0 chr5 130504651 130504707 -22032552 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 2 1580 1276 41 0 0 chr5 130504707 130504854 -22032405 - B1_Mus1 SINE Alu 0 148 2 2 1580 591 231 31 0 chr5 130504886 130505016 -22032243 - B1F SINE Alu -15 134 1 2 1580 291 250 83 0 chr5 130505679 130505751 -22031508 - ID4 SINE ID -3 80 3 2 1580 806 200 78 10 chr5 130505812 130506004 -22031255 - MTD LTR MaLR 0 419 215 2 1580 255 31 0 0 chr5 130506015 130506047 -22031212 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 1580 1012 104 0 0 chr5 130506047 130506181 -22031078 - B1_Mus1 SINE Alu -13 135 2 2 1580 556 288 6 53 chr5 130506181 130506332 -22030927 - MTD LTR MaLR -272 147 5 2 1580 899 140 0 7 chr5 130506362 130506499 -22030760 - B1_Mm SINE Alu -10 137 2 2 1580 282 266 78 0 chr5 130506580 130506644 -22030615 - ID4_ SINE ID -3 80 12 2 1580 232 200 160 0 chr5 130506692 130506742 -22030517 - ID4_ SINE ID -6 77 20 2 1580 732 115 0 0 chr5 130506743 130506856 -22030403 + (CA)n Simple_repeat Simple_repeat 2 114 0 3 1580 342 0 0 0 chr5 130506859 130506897 -22030362 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 1580 1206 48 0 20 chr5 130506997 130507147 -22030112 - B1_Mus2 SINE Alu 0 147 1 3 1580 370 192 9 66 chr5 130507741 130507847 -22029412 + ID_B1 SINE B4 118 217 -7 3 1580 645 214 220 0 chr5 130508172 130508345 -22028914 - ID_B1 SINE B4 0 224 14 3 1580 233 222 0 18 chr5 130508296 130508351 -22028908 - tRNA-Ala-GCY_ tRNA tRNA -20 55 2 3 1580 216 317 113 14 chr5 130508755 130508896 -22028363 + MIRc SINE MIR 63 217 -51 3 1580 540 177 0 0 chr5 130508908 130508987 -22028272 - B3 SINE B2 -136 80 2 3 1580 759 54 0 58 chr5 130508994 130509150 -22028109 + (TTCTC)n Simple_repeat Simple_repeat 3 149 0 3 1580 402 250 151 60 chr5 130509457 130509623 -22027636 - B3A SINE B2 -16 182 2 3 1580 397 349 22 33 chr5 130510366 130510547 -22026712 + B3A SINE B2 4 182 -16 4 1580 233 200 36 0 chr5 130511987 130512042 -22025217 + (TCTCTG)n Simple_repeat Simple_repeat 6 62 0 4 1580 451 106 313 17 chr5 130512159 130512274 -22024985 - B2_Mm2 SINE B2 0 195 47 4 1580 1203 107 12 0 chr5 130512325 130512493 -22024766 - B2_Mm1a SINE B2 -22 171 2 4 1580 1268 28 0 0 chr5 130512677 130512819 -22024440 + B1_Mus1 SINE Alu 1 142 -6 4 1580 231 61 0 0 chr5 130512822 130512855 -22024404 + (A)n Simple_repeat Simple_repeat 1 33 0 4 1580 501 278 83 0 chr5 130512871 130513004 -22024255 - RSINE1 SINE B4 -10 155 12 4 1580 321 26 0 0 chr5 130513015 130513053 -22024206 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 4 1580 1123 88 44 0 chr5 130513053 130513206 -22024053 - B2_Mm1a SINE B2 -32 161 2 4 1580 564 167 228 37 chr5 130513320 130513482 -22023777 - B3A SINE B2 -1 197 5 4 1580 482 270 96 12 chr5 130514348 130514495 -22022764 - ID_B1 SINE B4 -59 233 79 5 1580 2511 58 0 0 chr5 130514906 130515219 -22022040 - L1Md_A LINE L1 0 6582 6270 5 1580 1710 16 0 0 chr5 130515420 130515609 -22021650 + B2_Mm1a SINE B2 2 190 -3 5 1580 751 330 30 39 chr5 130515674 130516005 -22021254 - MT2A LTR ERVL -105 428 101 5 1580 180 0 0 0 chr5 130516259 130516279 -22020980 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5 1580 633 153 152 8 chr5 130517013 130517138 -22020121 - B1_Mur4 SINE Alu -6 144 2 5 1580 525 301 21 54 chr5 130517343 130517529 -22019730 + B3A SINE B2 3 182 -16 5 1580 21 0 0 0 chr5 130517540 130517561 -22019698 + AT_rich Low_complexity Low_complexity 1 21 0 5 1580 1037 192 30 5 chr5 130517632 130517831 -22019428 - B3 SINE B2 -9 207 4 5 1580 321 382 46 20 chr5 130517856 130518008 -22019251 + B3A SINE B2 43 198 0 5 1580 228 204 23 0 chr5 130518865 130518909 -22018350 - ID4 SINE ID -3 80 36 6 1580 346 194 48 0 chr5 130519037 130519099 -22018160 - B3A SINE B2 -36 162 98 6 1580 291 28 0 0 chr5 130519100 130519136 -22018123 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1580 775 184 20 33 chr5 130519136 130519288 -22017971 - B3A SINE B2 -48 150 1 6 1580 296 298 153 35 chr5 130519336 130519590 -22017669 - L1MEf LINE L1 -5351 849 566 6 1580 666 240 37 69 chr5 130519655 130519843 -22017416 - B3A SINE B2 -7 191 10 6 1580 362 240 0 0 chr5 130521298 130521373 -22015886 + B3A SINE B2 3 77 -121 6 1580 535 255 132 30 chr5 130521406 130521572 -22015687 - B3 SINE B2 -31 185 3 6 1580 333 273 23 0 chr5 130522133 130522221 -22015038 - ID_B1 SINE B4 -133 91 2 6 1580 212 333 0 14 chr5 130522265 130522338 -22014921 + CT-rich Low_complexity Low_complexity 4 75 0 6 1580 744 226 20 50 chr5 130522980 130523180 -22014079 + B3A SINE B2 5 198 0 7 1580 338 244 64 0 chr5 130523251 130523329 -22013930 + ID_B1 SINE B4 104 186 -38 7 1580 330 197 30 0 chr5 130523375 130523441 -22013818 - MTE2b LTR MaLR 0 379 312 7 1580 438 256 0 83 chr5 130523436 130523568 -22013691 - MTE2b LTR MaLR -258 121 1 7 1580 484 200 35 0 chr5 130523570 130523655 -22013604 + ID_B1 SINE B4 104 191 -33 7 1580 237 220 16 33 chr5 130523608 130523669 -22013590 + RLTR25A LTR ERVK 541 600 -503 7 1580 501 264 56 0 chr5 130523669 130523794 -22013465 + RSINE1 SINE B4 11 142 -23 7 1580 1453 79 5 0 chr5 130523965 130524154 -22013105 - B2_Mm1a SINE B2 -2 191 2 7 1580 586 188 9 26 chr5 130524256 130524371 -22012888 - PB1D9 SINE Alu -1 119 7 7 1580 267 250 66 94 chr5 130524294 130524400 -22012859 - MT2B LTR ERVL -362 239 137 7 1580 510 306 20 13 chr5 130524419 130524568 -22012691 - RSINE1 SINE B4 0 165 16 7 1580 245 212 338 0 chr5 130525404 130525484 -22011775 - B1F2 SINE Alu -13 107 1 8 1580 845 117 8 0 chr5 130525760 130525880 -22011379 + B1_Mur4 SINE Alu 1 121 -29 8 1580 420 262 37 9 chr5 130525884 130525992 -22011267 + PB1D9 SINE Alu 10 120 0 8 1580 202 194 13 53 chr5 130525999 130526075 -22011184 + A-rich Low_complexity Low_complexity 5 77 0 8 1580 502 268 37 0 chr5 130526736 130526900 -22010359 - Ricksha_c DNA MuDR -1199 849 680 8 1580 507 262 128 66 chr5 130528057 130528331 -22008928 + B4 SINE B4 2 292 0 8 1580 539 254 90 0 chr5 130529339 130529461 -22007798 - ID_B1 SINE B4 -7 217 85 8 1580 245 313 72 51 chr5 130529341 130529479 -22007780 + YREP_Mm Unknown Unknown 186 326 -1486 8 1580 1237 100 10 10 chr5 130529483 130529675 -22007584 - B2_Mm1t SINE B2 0 193 2 8 1580 183 42 0 0 chr5 130529788 130529812 -22007447 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1580 2867 268 122 41 chr5 130529818 130530023 -22007236 - Lx7 LINE L1 -346 7350 7159 9 1580 771 97 0 0 chr5 130530023 130530137 -22007122 + (TG)n Simple_repeat Simple_repeat 2 115 0 9 1580 2867 268 122 41 chr5 130530137 130531139 -22006120 - Lx7 LINE L1 -538 7158 6044 9 1580 870 91 33 0 chr5 130531168 130531289 -22005970 - B1_Mm SINE Alu -5 142 18 9 1580 3466 237 55 66 chr5 130531321 130532249 -22005010 - Lx7 LINE L1 -1782 5914 4997 9 1580 1073 92 28 0 chr5 130532249 130532391 -22004868 - B1_Mur4 SINE Alu -3 147 2 9 1580 3466 236 53 69 chr5 130532391 130532659 -22004600 - Lx7 LINE L1 -884 4996 4723 9 1580 249 33 0 0 chr5 130532713 130532743 -22004516 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1580 1011 101 126 0 chr5 130532750 130532909 -22004350 - B2_Mm2 SINE B2 -14 181 3 9 1580 874 152 323 40 chr5 130532958 130533280 -22003979 - L1_Mur3 LINE L1 -4121 1759 1347 9 1580 1247 48 0 0 chr5 130533280 130533427 -22003832 - B1_Mus2 SINE Alu 0 147 1 9 1580 414 310 82 26 chr5 130533430 130533698 -22003561 - L1_Mur3 LINE L1 -6425 1303 1021 9 1580 329 220 27 27 chr5 130533729 130533841 -22003418 - L1_Mur3 LINE L1 -6762 966 855 9 1580 692 243 162 0 chr5 130533977 130534162 -22003097 + B3 SINE B2 2 216 0 9 1580 34 42 0 0 chr5 130534162 130534210 -22003049 + AT_rich Low_complexity Low_complexity 1 48 0 9 1580 851 219 38 28 chr5 130534213 130534425 -22002834 - B3 SINE B2 -2 214 1 1 1580 535 310 121 31 chr5 130534482 130534805 -22002454 - ORR1E LTR MaLR 0 359 8 1 1580 651 188 17 25 chr5 130535202 130535322 -22001937 + B1_Mur2 SINE Alu 1 119 -30 1 1580 204 217 0 0 chr5 130535331 130535377 -22001882 + GA-rich Low_complexity Low_complexity 3 48 0 1 1580 336 258 97 75 chr5 130536420 130536554 -22000705 - B1F1 SINE Alu -1 148 12 1 1580 422 138 53 7 chr5 130536555 130536641 -22000618 + B1_Mur3 SINE Alu 35 149 0 1 1580 393 22 0 0 chr5 130536753 130536799 -22000460 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1580 297 242 63 42 chr5 130536815 130536910 -22000349 - B3A SINE B2 -57 141 45 1 1580 277 234 182 0 chr5 130536932 130537009 -22000250 - PB1 SINE Alu -13 114 24 1 1580 1718 26 0 0 chr5 130537071 130537264 -21999995 - B2_Mm1a SINE B2 0 193 1 1 1580 504 248 127 8 chr5 130537332 130537458 -21999801 - RSINE1 SINE B4 -2 163 23 1 1580 1188 210 158 35 chr5 130537461 130537772 -21999487 - ORR1D2 LTR MaLR -2 368 20 1 1580 256 264 0 0 chr5 130537847 130537900 -21999359 - PB1D9 SINE Alu -67 53 1 1 1580 271 291 12 0 chr5 130537916 130538002 -21999257 + Ricksha_c DNA MuDR 367 453 -1595 1 1580 268 299 95 130 chr5 130538077 130538308 -21998951 + ORR1E LTR MaLR 116 338 -21 1 1580 1398 209 165 43 chr5 130538599 130538757 -21998502 - MTC LTR MaLR 0 421 209 1 1580 2394 93 12 15 chr5 130538757 130539041 -21998218 + ORR1A2 LTR MaLR 1 287 -40 1 1580 1114 59 29 0 chr5 130539041 130539177 -21998082 + B1_Mus1 SINE Alu 2 141 -7 1 1580 2394 93 12 15 chr5 130539177 130539220 -21998039 + ORR1A2 LTR MaLR 288 327 0 1 1580 1398 209 165 43 chr5 130539220 130539436 -21997823 - MTC LTR MaLR -213 208 1 1 1580 267 276 53 68 chr5 130539581 130539713 -21997546 - MLT2B4 LTR ERVL -74 482 353 1 1580 198 0 0 0 chr5 130540386 130540408 -21996851 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1580 1095 80 0 0 chr5 130540574 130540712 -21996547 - B1_Mus1 SINE Alu -9 139 2 1 1580 295 238 31 16 chr5 130540791 130540855 -21996404 + ID_B1 SINE B4 140 204 -20 1 1580 237 284 54 0 chr5 130540875 130540949 -21996310 - L1MC4 LINE L1 -1037 7005 6928 1 1580 199 50 24 48 chr5 130540958 130541000 -21996259 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 1 1580 410 174 106 21 chr5 130541128 130541222 -21996037 - PB1D9 SINE Alu -1 119 18 1 1580 210 265 82 0 chr5 130541187 130541236 -21996023 - ID_B1 SINE B4 -91 133 81 1 1580 1386 66 61 0 chr5 130541265 130541446 -21995813 + B2_Mm2 SINE B2 1 192 -3 1 1580 465 256 124 6 chr5 130541585 130541746 -21995513 - B3A SINE B2 -18 180 1 1 1580 453 265 25 41 chr5 130541761 130541883 -21995376 - PB1D7 SINE Alu 0 120 1 1 1580 279 211 157 52 chr5 130542030 130542145 -21995114 + RSINE1 SINE B4 2 128 -37 1 1580 24 32 0 0 chr5 130542184 130542215 -21995044 + AT_rich Low_complexity Low_complexity 1 31 0 1 1580 1284 95 16 5 chr5 130542218 130542409 -21994850 + B2_Mm1t SINE B2 1 193 0 1 1580 699 176 0 97 chr5 130542416 130542561 -21994698 + B1_Mur4 SINE Alu 2 132 -18 1 1580 1212 63 0 0 chr5 130542777 130542935 -21994324 + (TTTC)n Simple_repeat Simple_repeat 2 159 0 1 1580 1337 59 6 0 chr5 130542939 130543109 -21994150 - B2_Mm1a SINE B2 -22 171 1 1 1580 422 266 6 139 chr5 130543319 130543485 -21993774 - ID_B1 SINE B4 0 224 81 1 1580 559 254 21 63 chr5 130543487 130543548 -21993711 - ID_B1 SINE B4 -71 153 95 1 1580 3047 60 16 5 chr5 130543548 130543936 -21993323 - MTA_Mm LTR MaLR -2 394 3 1 1580 559 254 21 63 chr5 130543936 130544017 -21993242 - ID_B1 SINE B4 -130 94 17 1 1580 210 239 0 21 chr5 130544419 130544466 -21992793 + CT-rich Low_complexity Low_complexity 6 51 0 1 1580 410 230 0 0 chr5 130544485 130544559 -21992700 - ID_B1 SINE B4 -18 206 133 1 1580 240 310 28 0 chr5 130544833 130544904 -21992355 - BC1_Mm scRNA scRNA -73 79 7 1 1580 397 276 0 19 chr5 130544951 130545058 -21992201 - B3A SINE B2 -93 105 1 1 1580 456 333 14 7 chr5 130545103 130545251 -21992008 - B4 SINE B4 -140 152 4 1 1580 884 264 140 18 chr5 130545555 130545891 -21991368 + MTEa LTR MaLR 1 377 -2 1 1580 650 296 89 5 chr5 130546126 130546316 -21990943 - MTEa LTR MaLR -173 206 1 1 1580 451 267 67 0 chr5 130546328 130546448 -21990811 + B1_Mur3 SINE Alu 13 140 -9 1 1580 422 114 14 0 chr5 130547032 130547102 -21990157 + (TCTCCC)n Simple_repeat Simple_repeat 3 73 0 1 1580 319 267 128 10 chr5 130547195 130547297 -21989962 - PB1D10 SINE Alu -2 115 2 1 1580 724 90 33 22 chr5 130547319 130547592 -21989667 + (TCTA)n Simple_repeat Simple_repeat 1 276 0 1 1581 343 268 120 16 chr5 130547754 130547879 -21989380 - B1F SINE Alu 0 150 13 1 1581 541 318 37 64 chr5 130547952 130548248 -21989011 + B4A SINE B4 5 292 0 1 1581 405 299 62 16 chr5 130548452 130548581 -21988678 + B1F SINE Alu 2 136 -13 1 1581 213 239 0 0 chr5 130548659 130548705 -21988554 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 1 1581 428 298 118 45 chr5 130548977 130549193 -21988066 - MTD LTR MaLR -29 390 177 1 1581 1282 140 14 0 chr5 130549185 130549392 -21987867 + ORR1B1 LTR MaLR 185 394 0 1 1581 228 339 0 0 chr5 130549392 130549448 -21987811 - ID SINE ID -162 62 7 1 1581 986 87 13 0 chr5 130549622 130549772 -21987487 + (TCCA)n Simple_repeat Simple_repeat 2 153 0 1 1581 336 102 0 0 chr5 130549774 130549823 -21987436 + (CATA)n Simple_repeat Simple_repeat 4 52 0 1 1581 1232 173 34 5 chr5 130549827 130550036 -21987223 + B3 SINE B2 2 216 0 1 1581 601 226 52 8 chr5 130550042 130550176 -21987083 + B3A SINE B2 2 141 -57 1 1581 392 299 9 9 chr5 130550218 130550326 -21986933 + PB1D9 SINE Alu 1 108 -12 1 1581 392 327 0 0 chr5 130551402 130551509 -21985750 - PB1D10 SINE Alu -5 112 6 1 1581 334 153 174 12 chr5 130551524 130551610 -21985649 - B1_Mus2 SINE Alu -1 146 47 1 1581 334 139 0 244 chr5 130551660 130551769 -21985490 + B3 SINE B2 32 111 -105 1 1581 194 0 0 37 chr5 130551801 130551828 -21985431 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1 1581 361 168 11 0 chr5 130551828 130551898 -21985361 - PB1D10 SINE Alu -13 107 34 1 1581 489 258 0 0 chr5 130552048 130552141 -21985118 + ID_B1 SINE B4 132 224 0 1 1581 281 259 141 0 chr5 130552150 130552235 -21985024 + B1F SINE Alu 1 97 -52 1 1581 227 73 0 47 chr5 130552247 130552290 -21984969 + (CAAAAA)n Simple_repeat Simple_repeat 1 41 0 1 1581 283 269 13 13 chr5 130553391 130553470 -21983789 - ID4 SINE ID -1 82 4 1 1581 554 279 74 12 chr5 130553472 130553680 -21983579 - ZP3AR Satellite Satellite -10 220 1 1 1581 402 57 0 0 chr5 130553993 130554046 -21983213 + (TATG)n Simple_repeat Simple_repeat 4 56 0 1 1581 246 345 90 42 chr5 130554161 130554373 -21982886 - ID_B1 SINE B4 0 224 3 1 1581 394 270 80 0 chr5 130554399 130554499 -21982760 - PB1D7 SINE Alu -12 108 1 1 1581 481 310 39 8 chr5 130554522 130554652 -21982607 - B1F SINE Alu -10 139 6 1 1581 813 214 97 24 chr5 130554668 130554874 -21982385 - ID_B1 SINE B4 -2 222 2 1 1581 287 209 75 0 chr5 130555800 130555867 -21981392 - B1F SINE Alu -11 138 67 1 1581 257 236 0 35 chr5 130555876 130555933 -21981326 - B1F SINE Alu -29 120 66 1 1581 274 233 0 16 chr5 130555902 130555963 -21981296 - B1_Mm SINE Alu -24 123 64 1 1581 303 262 80 144 chr5 130555933 130556058 -21981201 - B1F1 SINE Alu -25 124 8 1 1581 895 233 14 19 chr5 130556249 130556463 -21980796 - B3 SINE B2 -1 215 3 1 1581 350 230 26 130 chr5 130556479 130556594 -21980665 - PB1D7 SINE Alu -11 109 7 1 1581 291 304 26 135 chr5 130556594 130556628 -21980631 - ID_B1 SINE B4 -21 183 65 1 1581 667 179 8 25 chr5 130556633 130556753 -21980506 + RSINE1 SINE B4 12 129 -36 1 1581 351 0 0 0 chr5 130557012 130557051 -21980208 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1581 258 174 0 11 chr5 130557183 130557235 -21980024 - B1F1 SINE Alu -69 51 3 1 1581 767 258 10 56 chr5 130557452 130557649 -21979610 + B3A SINE B2 9 196 -2 1 1581 609 174 0 10 chr5 130557790 130557889 -21979370 - B3 SINE B2 -118 98 1 1 1581 22 35 0 0 chr5 130557898 130557927 -21979332 + AT_rich Low_complexity Low_complexity 1 29 0 1 1581 302 152 17 0 chr5 130558187 130558246 -21979013 + CT-rich Low_complexity Low_complexity 4 63 0 1 1581 565 167 0 0 chr5 130558246 130558342 -21978917 - B1_Mus1 SINE Alu -52 96 1 1 1581 779 284 55 73 chr5 130558389 130558678 -21978581 - B4 SINE B4 -1 291 8 1 1581 212 194 0 0 chr5 130558690 130558726 -21978533 + T-rich Low_complexity Low_complexity 1 36 0 1 1581 573 138 0 0 chr5 130558726 130558820 -21978439 + (TC)n Simple_repeat Simple_repeat 1 94 0 1 1581 398 308 26 0 chr5 130558820 130558937 -21978322 - PB1D7 SINE Alu 0 120 1 1 1581 574 207 147 45 chr5 130559124 130559136 -21978123 - B3A SINE B2 0 198 187 1 1581 207 0 0 0 chr5 130559136 130559159 -21978100 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1581 574 207 147 45 chr5 130559159 130559323 -21977936 - B3A SINE B2 -12 186 4 1 1581 411 335 34 6 chr5 130559668 130559845 -21977414 - L1M4 LINE L1 -6344 198 17 1 1581 1098 285 92 34 chr5 130559872 130560500 -21976759 - L1M4 LINE L1 -5790 752 19 1 1581 1217 15 0 0 chr5 130561020 130561157 -21976102 + B1_Mus2 SINE Alu 2 138 -9 1 1581 949 154 25 6 chr5 130561465 130561628 -21975631 + B3 SINE B2 1 166 -50 2 1581 2170 160 21 29 chr5 130561627 130561819 -21975440 - ORR1C2 LTR MaLR -13 371 175 2 1581 429 20 0 0 chr5 130561819 130561869 -21975390 + (GA)n Simple_repeat Simple_repeat 1 50 0 2 1581 2170 160 21 29 chr5 130561869 130562050 -21975209 - ORR1C2 LTR MaLR -210 174 1 2 1581 658 233 9 0 chr5 130562050 130562166 -21975093 + B3A SINE B2 38 154 -44 2 1581 318 87 0 0 chr5 130562189 130562235 -21975024 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1581 800 185 20 7 chr5 130562248 130562395 -21974864 + B1_Mur1 SINE Alu 1 149 0 2 1581 1593 42 5 0 chr5 130562933 130563123 -21974136 - B2_Mm1t SINE B2 -1 192 2 2 1581 235 329 73 79 chr5 130563242 130563407 -21973852 + RSINE1 SINE B4 2 165 0 2 1581 1101 75 0 64 chr5 130563601 130563757 -21973502 - B1_Mus1 SINE Alu -2 146 1 2 1581 354 210 69 95 chr5 130563936 130564052 -21973207 + B3A SINE B2 86 198 0 2 1581 209 161 0 0 chr5 130564054 130564085 -21973174 - L2c LINE L2 -80 3307 3277 2 1581 414 269 97 28 chr5 130564487 130564632 -21972627 - RSINE1 SINE B4 -10 155 1 2 1581 189 0 0 0 chr5 130564670 130564691 -21972568 + (ATG)n Simple_repeat Simple_repeat 2 22 0 2 1581 929 162 156 5 chr5 130564704 130564890 -21972369 + B3 SINE B2 1 214 -2 2 1581 505 259 69 7 chr5 130565460 130565604 -21971655 + ID_B1 SINE B4 2 154 -70 2 1581 357 265 30 90 chr5 130566104 130566270 -21970989 - RSINE1 SINE B4 -8 157 2 2 1581 308 191 157 0 chr5 130567117 130567206 -21970053 - Lx9 LINE L1 -2 7642 7540 2 1581 639 200 82 8 chr5 130567206 130567378 -21969881 - B3 SINE B2 -1 194 9 2 1581 1107 169 34 0 chr5 130567386 130567593 -21969666 - Lx9 LINE L1 -108 7536 7323 2 1581 926 274 12 12 chr5 130568077 130568328 -21968931 - Lx9 LINE L1 -317 7327 7077 2 1581 913 219 49 10 chr5 130568338 130568541 -21968718 - B3 SINE B2 -4 212 2 2 1581 195 100 0 0 chr5 130568815 130568845 -21968414 + (CTTA)n Simple_repeat Simple_repeat 2 31 0 2 1581 746 171 54 0 chr5 130568845 130568974 -21968285 - B1_Mur2 SINE Alu -12 137 2 2 1581 1024 214 14 9 chr5 130568987 130569199 -21968060 - B3 SINE B2 -2 214 2 2 1581 1207 62 0 0 chr5 130569235 130569380 -21967879 - B1_Mus2 SINE Alu -2 145 1 2 1581 1471 54 27 0 chr5 130569555 130569740 -21967519 - B2_Mm1t SINE B2 -2 191 2 2 1581 878 55 153 30 chr5 130569755 130569886 -21967373 - B1_Mm SINE Alu 0 147 1 2 1581 644 230 60 30 chr5 130570308 130570474 -21966785 - B3A SINE B2 -1 197 27 2 1581 280 88 520 28 chr5 130570478 130570578 -21966681 - B2_Mm2 SINE B2 0 195 47 2 1581 1266 87 35 0 chr5 130570610 130570783 -21966476 - B2_Mm1t SINE B2 -14 179 1 2 1581 212 208 0 36 chr5 130570808 130570863 -21966396 + (TCTCTG)n Simple_repeat Simple_repeat 6 58 0 2 1581 770 265 70 41 chr5 130570882 130571153 -21966106 - B4A SINE B4 0 292 14 2 1581 391 315 23 8 chr5 130571879 130572010 -21965249 - ID_B1 SINE B4 0 224 92 2 1581 24 0 0 0 chr5 130572013 130572037 -21965222 + AT_rich Low_complexity Low_complexity 1 24 0 2 1581 886 142 22 0 chr5 130572038 130572172 -21965087 - B1_Mus2 SINE Alu -8 139 3 2 1581 315 250 28 0 chr5 130572259 130572331 -21964928 - ID4_ SINE ID -1 82 9 2 1581 245 136 0 43 chr5 130572950 130572996 -21964263 + B2_Mm2 SINE B2 1 44 -151 2 1581 495 239 26 17 chr5 130572986 130573101 -21964158 + B3A SINE B2 82 197 -1 2 1581 484 226 28 28 chr5 130573189 130573298 -21963961 - PB1D10 SINE Alu -2 115 7 2 1581 756 238 7 7 chr5 130573211 130573363 -21963896 - ID_B1 SINE B4 -51 173 22 2 1581 304 155 52 0 chr5 130573623 130573681 -21963578 - L1M4 LINE L1 -1406 4740 4680 2 1581 190 274 93 27 chr5 130573905 130573980 -21963279 + L2b LINE L2 3054 3133 -242 2 1581 943 303 59 0 chr5 130573987 130574258 -21963001 + B4 SINE B4 1 287 -5 2 1581 225 0 0 0 chr5 130574269 130574294 -21962965 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1581 230 29 59 0 chr5 130574298 130574332 -21962927 + (CAGA)n Simple_repeat Simple_repeat 1 36 0 2 1581 621 215 24 24 chr5 130574399 130574523 -21962736 + B3A SINE B2 22 145 -53 2 1581 522 0 0 0 chr5 130574537 130574595 -21962664 + (TC)n Simple_repeat Simple_repeat 1 58 0 2 1581 316 321 25 2 chr5 130575204 130575400 -21961859 - L1MB7 LINE L1 -2 6182 5979 2 1581 281 280 13 0 chr5 130575658 130575733 -21961526 + CT-rich Low_complexity Low_complexity 3 78 0 2 1581 364 318 29 29 chr5 130575733 130575869 -21961390 - B1F SINE Alu 0 149 14 2 1581 486 0 0 0 chr5 130576320 130576374 -21960885 + (TATG)n Simple_repeat Simple_repeat 2 55 0 2 1581 776 199 128 0 chr5 130576374 130576413 -21960846 - B3 SINE B2 -11 205 167 2 1581 297 0 0 0 chr5 130576413 130576446 -21960813 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1581 776 199 128 0 chr5 130576446 130576562 -21960697 - B3 SINE B2 -50 166 31 2 1581 237 159 116 0 chr5 130576757 130576826 -21960433 - MLT2D LTR ERVL -53 507 431 2 1581 466 211 14 109 chr5 130577195 130577333 -21959926 - PB1 SINE Alu -2 125 1 2 1581 302 182 0 15 chr5 130578422 130578489 -21958770 + CT-rich Low_complexity Low_complexity 3 68 0 2 1581 536 227 52 1 chr5 130578529 130578658 -21958601 + B1_Mur4 SINE Alu 16 150 0 2 1581 228 35 0 0 chr5 130578767 130578796 -21958463 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1581 390 42 0 0 chr5 130579008 130579056 -21958203 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1581 848 147 175 0 chr5 130579465 130579676 -21957583 - Lx9 LINE L1 -6 7638 7391 2 1581 667 232 146 0 chr5 130579704 130579868 -21957391 - ID_B1 SINE B4 -32 192 5 2 1581 743 177 0 31 chr5 130580428 130580556 -21956703 - B1_Mur3 SINE Alu 0 149 26 2 1581 253 309 23 23 chr5 130580574 130580660 -21956599 - MER34 LTR ERV1 -384 158 73 2 1581 297 0 0 0 chr5 130580674 130580707 -21956552 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 2 1581 257 264 0 0 chr5 130581079 130581132 -21956127 + MER2B DNA MER2_type 22 74 -262 2 1581 313 336 46 39 chr5 130581291 130581421 -21955838 + MER2B DNA MER2_type 205 335 -1 2 1581 788 130 0 24 chr5 130581521 130581647 -21955612 + B1_Mur4 SINE Alu 28 150 0 2 1581 213 149 21 0 chr5 130581650 130581697 -21955562 + A-rich Low_complexity Low_complexity 3 50 0 2 1581 227 204 0 0 chr5 130581778 130581827 -21955432 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1581 498 278 68 73 chr5 130581829 130581863 -21955396 - B3 SINE B2 -11 205 171 2 1581 423 0 0 0 chr5 130581863 130581910 -21955349 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 2 1581 507 251 33 63 chr5 130581910 130582081 -21955178 - B3A SINE B2 -46 170 1 2 1581 1247 271 62 69 chr5 130582083 130582605 -21954654 - L1MC1 LINE L1 -280 6053 5540 2 1581 667 247 38 152 chr5 130582610 130582873 -21954386 + MTE2b LTR MaLR 5 237 -142 2 1581 1347 71 55 0 chr5 130582929 130583111 -21954148 - B2_Mm2 SINE B2 -2 193 2 2 1581 557 289 158 29 chr5 130583147 130583496 -21953763 - L1MEc LINE L1 -5511 889 496 2 1581 543 240 16 47 chr5 130583640 130583688 -21953571 - ID_B1 SINE B4 -11 213 169 2 1581 1375 198 252 48 chr5 130583688 130584187 -21953072 - MT2B LTR ERVL 0 601 1 2 1581 543 240 16 47 chr5 130584187 130584265 -21952994 - ID_B1 SINE B4 -56 168 91 2 1581 591 275 117 20 chr5 130584663 130584860 -21952399 + B3 SINE B2 1 216 0 2 1581 642 269 23 11 chr5 130584903 130585080 -21952179 + B3 SINE B2 33 211 -5 2 1581 221 0 0 33 chr5 130585228 130585258 -21952001 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1581 365 265 98 0 chr5 130585499 130585601 -21951658 + L1M4 LINE L1 687 798 -5744 2 1581 1053 274 40 11 chr5 130585793 130586070 -21951189 - B4 SINE B4 -6 286 2 2 1581 493 174 60 20 chr5 130586104 130586204 -21951055 + B1_Mur2 SINE Alu 46 149 0 2 1581 734 265 159 30 chr5 130586281 130586369 -21950890 + MTD LTR MaLR 1 92 -304 2 1581 823 218 90 20 chr5 130586369 130586570 -21950689 + B3 SINE B2 1 215 -1 2 1581 1032 181 124 11 chr5 130586570 130586828 -21950431 + MTD LTR MaLR 93 404 -15 2 1581 285 245 55 0 chr5 130587533 130587628 -21949631 + ID_B1 SINE B4 84 184 -40 2 1581 429 194 44 44 chr5 130587630 130587743 -21949516 - MTC LTR MaLR 0 421 309 2 1581 426 181 35 32 chr5 130587739 130587837 -21949422 - MTC LTR MaLR -299 108 1 2 1581 441 248 0 47 chr5 130587901 130588007 -21949252 + B3A SINE B2 9 109 -89 2 1581 368 323 122 47 chr5 130588111 130588407 -21948852 + MT2A LTR ERVL 100 417 -116 2 1581 195 42 0 0 chr5 130588600 130588624 -21948635 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 1581 31 0 0 24 chr5 130588628 130588643 -21948616 + AT_rich Low_complexity Low_complexity 1 15 0 2 1581 975 230 24 0 chr5 130588643 130588852 -21948407 + B3 SINE B2 2 215 -1 2 1581 31 0 0 24 chr5 130588852 130588878 -21948381 + AT_rich Low_complexity Low_complexity 1 26 0 2 1581 334 312 119 24 chr5 130588882 130589092 -21948167 + L1M4 LINE L1 4129 4358 -2286 2 1581 328 249 98 35 chr5 130589104 130589205 -21948054 - B1F2 SINE Alu -26 123 16 2 1581 279 240 60 167 chr5 130589432 130589582 -21947677 - RSINE1 SINE B4 0 165 32 2 1581 514 261 49 14 chr5 130589602 130589746 -21947513 - B1_Mur1 SINE Alu 0 149 1 2 1581 381 43 0 0 chr5 130589864 130589911 -21947348 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1581 371 68 4 0 chr5 130589933 130589989 -21947270 + ORR1A3 LTR MaLR 284 326 0 2 1581 245 231 45 63 chr5 130590033 130590144 -21947115 - Lx4B LINE L1 -16 7042 6934 2 1581 502 278 8 16 chr5 130590150 130590278 -21946981 - ID_B1 SINE B4 0 224 98 2 1581 905 216 88 0 chr5 130591083 130591277 -21945982 + B3 SINE B2 6 216 0 2 1581 1014 62 0 0 chr5 130591411 130591539 -21945720 - B1_Mus1 SINE Alu 0 148 21 2 1581 305 331 55 21 chr5 130592339 130592484 -21944775 - RSINE1 SINE B4 -15 150 1 3 1581 234 302 22 44 chr5 130593065 130593155 -21944104 - Charlie24 DNA MER1_type -6 2444 2357 3 1581 274 256 12 47 chr5 130593545 130593631 -21943628 + ID4 SINE ID 1 83 0 3 1581 403 216 85 82 chr5 130593647 130593811 -21943448 + B3A SINE B2 11 198 0 3 1581 303 257 70 26 chr5 130593875 130594031 -21943228 - L1MEf LINE L1 -3284 3722 3560 3 1581 227 196 58 19 chr5 130594204 130594256 -21943003 - Charlie7 DNA MER1_type -2092 520 467 3 1581 378 330 92 35 chr5 130594378 130594607 -21942652 - L1MEf LINE L1 -4049 3053 2812 3 1581 291 218 18 114 chr5 130594623 130594737 -21942522 - MER58C DNA MER1_type 0 215 113 3 1581 501 284 42 74 chr5 130594919 130595109 -21942150 - B4A SINE B4 -1 291 108 3 1581 386 319 111 0 chr5 130595197 130595389 -21941870 - L1MEf LINE L1 -5208 1894 1594 3 1581 803 154 22 0 chr5 130596015 130596151 -21941108 - B1_Mur4 SINE Alu 0 150 12 3 1581 405 273 71 77 chr5 130596017 130596172 -21941087 - B4 SINE B4 -69 223 70 3 1581 260 324 148 5 chr5 130596428 130596614 -21940645 + B4 SINE B4 78 291 -1 3 1581 351 0 0 0 chr5 130596995 130597034 -21940225 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 1581 523 237 34 0 chr5 130597105 130597223 -21940036 - B1_Mur3 SINE Alu -6 143 22 3 1581 481 117 51 41 chr5 130597433 130597531 -21939728 - PB1D10 SINE Alu -2 115 17 3 1581 905 203 17 82 chr5 130597586 130597817 -21939442 - B3 SINE B2 0 216 1 3 1581 266 247 95 36 chr5 130597880 130597964 -21939295 + B1_Mus2 SINE Alu 27 115 -32 3 1581 892 243 11 5 chr5 130598336 130598522 -21938737 + B3 SINE B2 1 187 -29 3 1581 495 308 38 0 chr5 130598991 130599124 -21938135 - B1F1 SINE Alu -7 142 5 3 1581 268 113 0 151 chr5 130599150 130599223 -21938036 - B3 SINE B2 0 216 155 3 1581 349 191 146 21 chr5 130599287 130599383 -21937876 + Lx9 LINE L1 7389 7496 -148 3 1581 952 182 57 33 chr5 130599551 130599761 -21937498 + B3 SINE B2 1 215 -1 3 1581 361 304 0 0 chr5 130599770 130599862 -21937397 - B1_Mur2 SINE Alu -56 93 2 3 1581 226 211 38 50 chr5 130600657 130600737 -21936522 + ID4_ SINE ID 1 79 -4 3 1581 410 250 10 10 chr5 130600999 130601096 -21936163 + MER58B DNA MER1_type 207 303 -38 3 1581 342 0 0 0 chr5 130601172 130601210 -21936049 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 3 1581 312 27 0 0 chr5 130601210 130601247 -21936012 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 1581 1558 52 16 0 chr5 130601325 130601516 -21935743 + B2_Mm2 SINE B2 1 194 -1 3 1581 356 173 449 0 chr5 130601550 130601677 -21935582 - B3A SINE B2 -14 184 1 3 1581 362 238 123 104 chr5 130601708 130601919 -21935340 - B3 SINE B2 0 216 2 3 1581 529 265 28 35 chr5 130602263 130602404 -21934855 - B3A SINE B2 -13 185 46 3 1581 469 283 83 0 chr5 130602390 130602510 -21934749 - B1_Mur1 SINE Alu -15 134 5 3 1581 622 232 7 27 chr5 130602536 130602682 -21934577 - ID_B1 SINE B4 -1 223 81 3 1581 1314 211 61 69 chr5 130602845 130603045 -21934214 - ORR1D1 LTR MaLR 0 374 167 3 1581 402 57 0 0 chr5 130603045 130603098 -21934161 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 3 1581 1314 211 61 69 chr5 130603098 130603274 -21933985 - ORR1D1 LTR MaLR -208 166 1 3 1581 244 145 194 0 chr5 130603320 130603382 -21933877 - L1M5 LINE L1 -1412 4734 4661 3 1581 477 0 0 0 chr5 130603383 130603436 -21933823 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 1581 900 271 46 21 chr5 130603449 130603690 -21933569 - B4 SINE B4 -44 248 2 3 1581 1182 68 0 13 chr5 130603828 130603978 -21933281 + B1_Mus1 SINE Alu 1 148 0 3 1581 240 111 0 0 chr5 130603999 130604044 -21933215 + (T)n Simple_repeat Simple_repeat 1 45 0 3 1581 545 167 382 6 chr5 130604047 130604204 -21933055 + B3 SINE B2 1 216 0 3 1581 832 163 35 0 chr5 130604218 130604359 -21932900 + B1_Mus1 SINE Alu 2 147 -1 3 1581 192 77 0 0 chr5 130604473 130604499 -21932760 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 1581 1136 97 19 0 chr5 130604500 130604654 -21932605 - B2_Mm2 SINE B2 -37 158 2 3 1581 21 0 0 0 chr5 130604663 130604684 -21932575 + AT_rich Low_complexity Low_complexity 1 21 0 3 1581 881 237 46 23 chr5 130604690 130604906 -21932353 + ID_B1 SINE B4 2 222 -2 3 1581 198 0 0 0 chr5 130605199 130605221 -21932038 + (G)n Simple_repeat Simple_repeat 1 22 0 3 1581 364 260 89 10 chr5 130605534 130605635 -21931624 + B1F SINE Alu 1 109 -40 3 1581 901 167 14 0 chr5 130605975 130606119 -21931140 + B1_Mur2 SINE Alu 3 148 -1 3 1581 481 243 0 0 chr5 130607074 130607185 -21930074 + PB1D10 SINE Alu 1 111 -6 3 1581 653 262 20 26 chr5 130607228 130607381 -21929878 + RSINE1 SINE B4 3 154 -11 3 1581 640 236 14 14 chr5 130607522 130607668 -21929591 + B1_Mur1 SINE Alu 1 146 -3 3 1581 1131 197 29 0 chr5 130607686 130607894 -21929365 - B3 SINE B2 -1 215 2 3 1581 809 135 11 178 chr5 130607915 130608095 -21929164 - B1_Mur2 SINE Alu 0 150 1 3 1581 1532 22 55 0 chr5 130608163 130608344 -21928915 - B2_Mm1a SINE B2 -1 192 2 3 1581 712 284 31 16 chr5 130608511 130608704 -21928555 + B3A SINE B2 1 196 -2 3 1581 817 246 62 17 chr5 130608708 130608886 -21928373 + B3 SINE B2 31 216 0 3 1581 389 250 82 18 chr5 130609075 130609185 -21928074 + B1F2 SINE Alu 2 118 -31 3 1581 228 244 50 25 chr5 130609174 130609254 -21928005 - MER77 LTR ERVL -120 487 406 3 1581 970 126 28 0 chr5 130609873 130610016 -21927243 + B1_Mur4 SINE Alu 4 150 0 3 1581 22 0 0 0 chr5 130610156 130610178 -21927081 + AT_rich Low_complexity Low_complexity 1 22 0 3 1581 237 252 177 23 chr5 130610421 130610551 -21926708 + MIRb SINE MIR 4 153 -115 3 1581 320 208 27 27 chr5 130611757 130611831 -21925428 - HAL1-3A_ME LINE L1 -809 2049 1976 3 1581 204 228 0 0 chr5 130611831 130611888 -21925371 + (TG)n Simple_repeat Simple_repeat 1 57 0 3 1581 1052 214 33 67 chr5 130611891 130612191 -21925068 - B4A SINE B4 -1 291 2 3 1581 704 184 20 34 chr5 130612223 130612369 -21924890 - B1_Mur3 SINE Alu -3 146 3 3 1581 320 231 214 14 chr5 130613081 130613226 -21924033 - MTEa LTR MaLR 0 379 206 3 1581 2114 81 40 3 chr5 130613237 130613534 -21923725 - RMER2 LTR ERV1 -5 562 255 3 1581 358 252 213 9 chr5 130613534 130613642 -21923617 - B1F SINE Alu -19 130 1 3 1581 204 40 0 0 chr5 130613658 130613683 -21923576 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1581 1246 48 0 0 chr5 130613683 130613830 -21923429 - B1_Mus2 SINE Alu 0 147 1 3 1581 865 171 7 0 chr5 130613926 130614072 -21923187 - B1_Mus1 SINE Alu -1 147 1 3 1581 448 64 505 9 chr5 130614091 130614198 -21923061 - B2_Mm2 SINE B2 -1 194 35 3 1581 377 235 241 8 chr5 130614196 130614329 -21922930 - B3A SINE B2 -32 166 3 3 1581 480 278 28 0 chr5 130614327 130614435 -21922824 - PB1D10 SINE Alu 0 117 7 3 1581 208 364 30 0 chr5 130614686 130614785 -21922474 - MIR SINE MIR -147 115 14 3 1581 219 200 22 0 chr5 130615124 130615169 -21922090 + (TATG)n Simple_repeat Simple_repeat 1 46 0 3 1581 419 307 44 0 chr5 130615566 130615680 -21921579 + RSINE1 SINE B4 16 134 -31 3 1581 1175 61 0 0 chr5 130615774 130615921 -21921338 + B1_Mus1 SINE Alu 2 148 0 3 1581 458 341 65 18 chr5 130615929 130616064 -21921195 + B3 SINE B2 27 171 -45 3 1581 312 27 0 0 chr5 130616064 130616101 -21921158 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1581 458 341 65 18 chr5 130616101 130616135 -21921124 + B3 SINE B2 172 204 -12 3 1581 243 0 0 0 chr5 130616201 130616228 -21921031 + (TTA)n Simple_repeat Simple_repeat 1 27 0 3 1581 576 291 7 14 chr5 130616228 130616371 -21920888 + ID_B1 SINE B4 82 223 -1 3 1581 1098 172 44 10 chr5 130616386 130616591 -21920668 - B3 SINE B2 -4 212 1 3 1581 523 0 30 0 chr5 130616714 130616781 -21920478 + (TC)n Simple_repeat Simple_repeat 2 70 0 3 1581 465 292 14 42 chr5 130616787 130616930 -21920329 - ID_B1 SINE B4 0 224 86 3 1581 242 231 77 0 chr5 130617166 130617218 -21920041 + MER58A DNA MER1_type 80 135 -89 3 1581 373 271 123 33 chr5 130617408 130617530 -21919729 + ID_B1 SINE B4 81 213 -11 3 1581 601 238 148 23 chr5 130617540 130617716 -21919543 + B3A SINE B2 1 198 0 3 1581 22 0 0 0 chr5 130617762 130617784 -21919475 + AT_rich Low_complexity Low_complexity 1 22 0 3 1581 856 179 0 58 chr5 130618207 130618379 -21918880 + B3A SINE B2 1 162 -36 3 1581 261 240 67 0 chr5 130619480 130619555 -21917704 - ID_B1 SINE B4 -4 220 141 3 1581 28 0 0 0 chr5 130619594 130619622 -21917637 + AT_rich Low_complexity Low_complexity 1 28 0 3 1581 217 224 82 49 chr5 130619635 130619696 -21917563 - B1_Mus1 SINE Alu -75 73 11 3 1581 204 234 43 0 chr5 130621494 130621541 -21915718 - MER91A DNA Tip100 -139 57 9 3 1581 227 294 33 76 chr5 130622190 130622282 -21914977 - RLTR9A2 LTR ERVK -238 145 58 3 1581 677 175 71 0 chr5 130622342 130622468 -21914791 + B1_Mur3 SINE Alu 5 139 -10 3 1581 441 0 0 0 chr5 130622468 130622517 -21914742 + (TAA)n Simple_repeat Simple_repeat 2 50 0 3 1581 340 302 17 117 chr5 130622604 130622784 -21914475 - B4A SINE B4 -39 253 92 3 1581 595 255 0 46 chr5 130622636 130622788 -21914471 - B1_Mus2 SINE Alu 0 147 3 3 1581 742 129 96 22 chr5 130624300 130624435 -21912824 - B1_Mm SINE Alu -1 146 2 3 1581 635 146 35 26 chr5 130624868 130624995 -21912264 + B1_Mus2 SINE Alu 5 137 -11 3 1581 225 65 0 0 chr5 130624995 130625026 -21912233 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1581 635 132 28 28 chr5 130625026 130625037 -21912222 + B1_Mus2 SINE Alu 137 147 0 3 1581 808 215 79 6 chr5 130625230 130625408 -21911851 - B3A SINE B2 -6 192 2 4 1581 554 265 116 17 chr5 130625961 130626134 -21911125 + B3A SINE B2 2 191 -7 4 1581 230 384 11 8 chr5 130626563 130626685 -21910574 + MIR SINE MIR 112 230 -38 4 1581 207 69 0 0 chr5 130627024 130627053 -21910206 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1581 1209 62 7 0 chr5 130627053 130627199 -21910060 - B1_Mus2 SINE Alu 0 147 1 4 1581 445 168 186 10 chr5 130627225 130627327 -21909932 - PB1D9 SINE Alu 0 120 1 4 1581 21 57 0 0 chr5 130629504 130629539 -21907720 + AT_rich Low_complexity Low_complexity 1 35 0 4 1581 507 263 18 43 chr5 130629931 130630094 -21907165 - ID_B1 SINE B4 -1 223 65 4 1581 380 293 0 0 chr5 130630700 130630782 -21906477 + ID4_ SINE ID 1 82 -1 4 1581 310 247 0 96 chr5 130631622 130631645 -21905614 + B4 SINE B4 71 84 -208 4 1581 426 173 13 0 chr5 130631645 130631720 -21905539 + B1_Mur4 SINE Alu 1 76 -74 4 1581 1021 154 80 0 chr5 130632000 130632175 -21905084 + B2_Mm2 SINE B2 1 189 -6 4 1581 719 145 226 58 chr5 130632549 130632739 -21904520 + URR1A DNA MER1_type 1 222 -4 4 1581 1712 26 0 0 chr5 130632887 130633079 -21904180 + B2_Mm1a SINE B2 2 193 0 4 1581 336 270 13 13 chr5 130633244 130633319 -21903940 + PB1 SINE Alu 20 94 -33 4 1581 402 242 95 0 chr5 130633465 130633560 -21903699 - B1_Mus1 SINE Alu -41 107 3 4 1581 468 269 200 23 chr5 130633581 130633756 -21903503 - B3 SINE B2 -10 206 1 4 1581 2216 94 0 75 chr5 130633760 130634047 -21903212 + ORR1A2 LTR MaLR 1 272 -55 4 1581 1104 60 0 0 chr5 130634047 130634180 -21903079 + B1_Mus1 SINE Alu 2 134 -14 4 1581 362 21 0 21 chr5 130634183 130634231 -21903028 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 4 1581 2216 94 0 75 chr5 130634231 130634284 -21902975 + ORR1A2 LTR MaLR 273 319 -8 4 1581 346 309 33 100 chr5 130634309 130634489 -21902770 - ID_B1 SINE B4 -48 176 9 4 1581 790 119 15 0 chr5 130634735 130634869 -21902390 + (TC)n Simple_repeat Simple_repeat 1 136 0 4 1581 841 141 21 7 chr5 130634869 130635012 -21902247 - B1_Mur4 SINE Alu -1 149 5 4 1581 242 307 13 0 chr5 130635099 130635174 -21902085 + CT-rich Low_complexity Low_complexity 5 80 0 4 1581 333 47 0 0 chr5 130635200 130635243 -21902016 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 4 1581 1211 45 6 13 chr5 130635243 130635400 -21901859 - B2_Mm1a SINE B2 -37 156 1 4 1581 454 256 0 0 chr5 130635409 130635495 -21901764 - PB1D7 SINE Alu 0 120 35 4 1581 182 37 37 0 chr5 130635553 130635580 -21901679 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 4 1581 1048 132 19 0 chr5 130635580 130635739 -21901520 - B2_Mm1t SINE B2 -30 163 2 4 1581 1164 82 0 0 chr5 130636092 130636238 -21901021 + B1_Mus2 SINE Alu 2 147 0 4 1581 180 0 0 0 chr5 130636279 130636299 -21900960 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 4 1581 1115 137 39 78 chr5 130636402 130636632 -21900627 + URR1B DNA MER1_type 5 225 0 4 1581 1238 41 0 0 chr5 130636775 130636922 -21900337 + B1_Mm SINE Alu 1 147 0 4 1581 231 36 0 0 chr5 130636922 130636950 -21900309 + (A)n Simple_repeat Simple_repeat 1 28 0 4 1581 1415 91 37 0 chr5 130637343 130637530 -21899729 - B2_Mm2 SINE B2 -1 194 1 4 1581 427 268 16 47 chr5 130637544 130637673 -21899586 - ID_B1 SINE B4 0 224 100 4 1581 548 208 27 22 chr5 130637663 130637802 -21899457 - PB1D7 SINE Alu -11 138 6 4 1581 574 304 105 0 chr5 130637812 130637983 -21899276 - ID_B1 SINE B4 -4 220 32 4 1581 215 286 0 18 chr5 130638038 130638095 -21899164 - PB1 SINE Alu -71 56 1 4 1581 675 192 72 60 chr5 130638234 130638293 -21898966 + RCHARR1 DNA MER1_type 563 624 -350 4 1581 2289 87 51 0 chr5 130638293 130638604 -21898655 + ORR1A2 LTR MaLR 1 327 0 4 1581 675 192 72 60 chr5 130638604 130638710 -21898549 + RCHARR1 DNA MER1_type 625 730 -244 4 1581 342 61 0 0 chr5 130638710 130638759 -21898500 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 4 1581 573 55 0 0 chr5 130638775 130638848 -21898411 - B1_Mus1 SINE Alu -75 73 1 4 1581 231 251 115 82 chr5 130638848 130638916 -21898343 + RCHARR1 DNA MER1_type 727 814 -160 4 1581 1093 88 0 26 chr5 130638916 130639067 -21898192 + B1_Mus2 SINE Alu 1 147 0 4 1581 231 251 115 82 chr5 130639067 130639175 -21898084 + RCHARR1 DNA MER1_type 815 909 -65 4 1581 337 280 67 85 chr5 130639206 130639244 -21898015 + RCHARR1 DNA MER1_type 814 843 -131 4 1581 1482 55 0 6 chr5 130639244 130639425 -21897834 - B2_Mm2 SINE B2 -14 181 2 4 1581 337 280 67 85 chr5 130639425 130639550 -21897709 + RCHARR1 DNA MER1_type 844 974 0 4 1581 336 295 123 39 chr5 130639739 130639894 -21897365 - LTR41 LTR ERVL -594 174 7 4 1581 4368 72 26 5 chr5 130639898 130640470 -21896789 + MT2B2 LTR ERVL 1 584 0 4 1581 370 331 22 75 chr5 130640932 130641066 -21896193 - B1F2 SINE Alu -17 132 6 4 1581 761 247 74 0 chr5 130641104 130641294 -21895965 - B3 SINE B2 -12 204 1 4 1581 207 0 0 0 chr5 130641385 130641408 -21895851 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1581 236 349 0 44 chr5 130641408 130641510 -21895749 - MLT2B4 LTR ERVL -356 200 104 4 1581 297 304 0 0 chr5 130641510 130641589 -21895670 + B3 SINE B2 2 80 -136 4 1581 4090 101 89 30 chr5 130641589 130642060 -21895199 - RLTR33 LTR ERVK 0 678 170 4 1581 249 57 0 0 chr5 130642060 130642095 -21895164 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4 1581 4090 101 89 30 chr5 130642095 130642263 -21894996 - RLTR33 LTR ERVK -509 169 1 4 1581 319 238 108 10 chr5 130642366 130642468 -21894791 - MLT2B4 LTR ERVL -442 114 3 4 1581 3610 145 64 29 chr5 130642600 130643587 -21893672 - RLTR13D1 LTR ERVK 0 1023 1 4 1581 278 100 0 39 chr5 130643599 130643651 -21893608 + (TTTC)n Simple_repeat Simple_repeat 3 52 0 4 1581 315 0 0 0 chr5 130643660 130643695 -21893564 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4 1581 522 0 0 0 chr5 130643709 130643767 -21893492 + (TCCC)n Simple_repeat Simple_repeat 2 59 0 4 1581 684 36 0 0 chr5 130643767 130643849 -21893410 + (TTTC)n Simple_repeat Simple_repeat 3 85 0 4 1581 789 151 0 0 chr5 130643849 130643968 -21893291 - B1_Mus1 SINE Alu -16 132 14 4 1581 348 308 6 95 chr5 130643968 130644007 -21893252 - ID_B1 SINE B4 -16 208 65 4 1581 595 167 10 0 chr5 130644007 130644103 -21893156 - ERVL-B4-int LTR ERVL -814 4900 4804 4 1581 688 241 14 14 chr5 130644216 130644363 -21892896 + ID_B1 SINE B4 76 222 -2 4 1581 316 286 108 23 chr5 130644413 130644542 -21892717 + RMER15 LTR ERVL 422 561 -14 4 1581 249 33 0 0 chr5 130644565 130644595 -21892664 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 4 1581 1138 68 0 13 chr5 130644595 130644733 -21892526 - B1_Mus1 SINE Alu -9 139 2 4 1581 1223 41 0 0 chr5 130644746 130644892 -21892367 - B1_Mm SINE Alu 0 147 2 4 1581 415 286 98 0 chr5 130644915 130645027 -21892232 - ID_B1 SINE B4 -11 213 91 4 1581 816 304 73 21 chr5 130645016 130645345 -21891914 - RMER5 LTR ERV1 -121 413 68 4 1581 1204 48 0 14 chr5 130645499 130645647 -21891612 + B1_Mm SINE Alu 1 146 -1 4 1581 984 160 200 0 chr5 130646180 130646355 -21890904 - B3 SINE B2 -6 210 1 4 1581 229 174 22 0 chr5 130646722 130646768 -21890491 - ID_B1 SINE B4 -74 150 104 4 1581 227 252 8 65 chr5 130647659 130647782 -21889477 + G-rich Low_complexity Low_complexity 6 121 0 4 1581 311 233 0 27 chr5 130648172 130648247 -21889012 + PB1D7 SINE Alu 42 114 -6 4 1581 360 339 16 31 chr5 130648607 130648735 -21888524 + B1F SINE Alu 10 135 -14 4 1581 666 144 40 48 chr5 130648805 130648929 -21888330 + B1_Mur4 SINE Alu 3 125 -25 4 1581 217 366 28 0 chr5 130648963 130649034 -21888225 - ID SINE ID -151 73 1 4 1581 382 273 48 48 chr5 130649090 130649236 -21888023 - B1_Mur2 SINE Alu -3 146 1 4 1581 441 234 238 98 chr5 130649246 130649502 -21887757 - B4A SINE B4 0 292 1 4 1581 500 248 102 25 chr5 130649719 130649876 -21887383 + B3 SINE B2 3 171 -45 4 1581 283 269 4 16 chr5 130649892 130649964 -21887295 + ID4 SINE ID 24 96 -56 4 1581 369 0 0 0 chr5 130650312 130650353 -21886906 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1581 183 42 0 0 chr5 130650614 130650638 -21886621 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1581 1120 66 0 0 chr5 130650638 130650774 -21886485 - B1_Mm SINE Alu -10 137 2 4 1581 375 145 65 13 chr5 130651130 130651207 -21886052 + B1F SINE Alu 23 103 -46 4 1581 460 270 236 0 chr5 130651323 130651471 -21885788 - B3A SINE B2 -15 183 1 4 1581 440 125 42 20 chr5 130651983 130652075 -21885184 - B1_Mur2 SINE Alu -5 144 24 4 1581 977 211 30 5 chr5 130652191 130652391 -21884868 + B3 SINE B2 2 206 -10 4 1581 528 277 43 37 chr5 130652421 130652582 -21884677 - RSINE1 SINE B4 -3 162 1 4 1581 786 46 82 18 chr5 130652622 130652732 -21884527 + B1_Mus1 SINE Alu 32 148 0 4 1581 216 0 0 0 chr5 130652789 130652813 -21884446 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1581 1014 39 8 0 chr5 130652813 130652940 -21884319 - B1_Mus1 SINE Alu 0 148 21 4 1581 489 203 62 76 chr5 130652818 130652962 -21884297 - B4 SINE B4 -71 221 80 4 1581 506 190 116 0 chr5 130653227 130653348 -21883911 - B1_Mur1 SINE Alu 0 149 15 4 1581 272 237 90 30 chr5 130653272 130653372 -21883887 - MT2B LTR ERVL -344 257 152 4 1581 516 32 0 0 chr5 130654293 130654355 -21882904 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1581 319 262 0 12 chr5 130655310 130655391 -21881868 - ID2 SINE ID -3 80 1 4 1581 713 206 18 130 chr5 130655421 130655644 -21881615 - B3A SINE B2 0 198 1 4 1581 380 291 19 0 chr5 130655790 130655893 -21881366 - PB1D10 SINE Alu -1 116 12 4 1581 236 274 62 31 chr5 130655795 130655903 -21881356 - Tigger11a DNA MER2_type -344 391 283 4 1581 666 37 0 0 chr5 130655903 130655984 -21881275 + (TCCCC)n Simple_repeat Simple_repeat 5 85 0 5 1581 236 274 62 31 chr5 130655984 130656003 -21881256 - Tigger11a DNA MER2_type -453 282 261 4 1581 718 223 58 16 chr5 130656092 130656278 -21880981 + B3 SINE B2 3 192 -3 5 1581 425 224 8 128 chr5 130656962 130657095 -21880164 + MT2B LTR ERVL 148 264 -337 5 1581 889 119 0 23 chr5 130656979 130657108 -21880151 + B1_Mus1 SINE Alu 1 126 -22 5 1581 1167 61 0 13 chr5 130657136 130657285 -21879974 + B1_Mus2 SINE Alu 1 147 0 5 1581 195 39 0 0 chr5 130657285 130657306 -21879953 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1581 560 258 59 88 chr5 130657433 130657637 -21879622 + B3A SINE B2 1 198 0 5 1581 300 262 131 0 chr5 130658117 130658201 -21879058 + PB1D10 SINE Alu 3 97 -20 5 1581 633 243 133 0 chr5 130658291 130658464 -21878795 - B3 SINE B2 -20 196 1 5 1581 1195 48 0 20 chr5 130658615 130658765 -21878494 - B1_Mus1 SINE Alu 0 148 2 5 1581 312 264 58 0 chr5 130659040 130659127 -21878132 - PB1D7 SINE Alu 0 117 19 5 1581 481 176 176 0 chr5 130659326 130659451 -21877808 + B1_Mus1 SINE Alu 1 147 -1 5 1581 454 273 18 9 chr5 130659624 130659735 -21877524 + PB1D7 SINE Alu 9 120 0 5 1581 349 244 12 12 chr5 130659874 130659957 -21877302 - ID4 SINE ID 0 83 1 5 1581 429 338 37 19 chr5 130660028 130660242 -21877017 - LTR40a LTR ERVL 0 519 302 5 1581 567 254 134 0 chr5 130660384 130660526 -21876733 - RSINE1 SINE B4 -2 163 3 5 1581 300 229 257 0 chr5 130660534 130660639 -21876620 - B1_Mur1 SINE Alu -16 133 2 5 1581 393 221 0 61 chr5 130660647 130660729 -21876530 + B4A SINE B4 212 288 -4 5 1581 207 204 20 0 chr5 130660733 130660782 -21876477 + (CATA)n Simple_repeat Simple_repeat 3 52 0 5 1581 703 296 32 5 chr5 130661058 130661248 -21876011 - B4A SINE B4 -93 199 5 5 1581 1023 281 86 25 chr5 130661367 130661728 -21875531 - RLTR18B LTR ERVK -19 493 111 5 1581 380 258 82 10 chr5 130661722 130661820 -21875439 - RLTR18B LTR ERVK -316 196 92 5 1581 3306 21 39 0 chr5 130661830 130662211 -21875048 - MTA_Mm LTR MaLR 0 396 1 5 1581 320 244 127 2 chr5 130662320 130662415 -21874844 - B1F1 SINE Alu -3 114 10 5 1581 317 272 85 43 chr5 130662395 130662442 -21874817 - MT2B LTR ERVL -298 286 178 5 1581 376 238 70 23 chr5 130662442 130662528 -21874731 - B1_Mm SINE Alu -57 90 1 5 1581 317 272 85 43 chr5 130662528 130662541 -21874718 - MT2B LTR ERVL -298 177 143 5 1581 374 287 28 56 chr5 130662591 130662698 -21874561 - RSINE1 SINE B4 -51 114 11 5 1581 765 194 193 23 chr5 130662725 130663031 -21874228 - L1M3 LINE L1 -793 5350 4990 5 1581 521 271 30 0 chr5 130663591 130663724 -21873535 - B3A SINE B2 -15 183 47 5 1581 950 83 26 70 chr5 130663773 130663837 -21873422 + RMER6A LTR ERVK 1 59 -697 5 1581 910 152 111 6 chr5 130663837 130664009 -21873250 + B2_Mm1a SINE B2 2 191 -2 5 1581 1016 45 183 49 chr5 130664009 130664173 -21873086 + B2_Mm2 SINE B2 2 187 -8 5 1581 950 83 26 70 chr5 130664173 130664263 -21872996 + RMER6A LTR ERVK 60 148 -608 5 1581 1192 212 84 84 chr5 130664759 130665014 -21872245 + RMER6A LTR ERVK 283 512 -244 5 1581 383 0 21 0 chr5 130665014 130665061 -21872198 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1581 1192 212 84 84 chr5 130665061 130665279 -21871980 + RMER6A LTR ERVK 513 756 0 5 1581 373 107 18 0 chr5 130665279 130665333 -21871926 - B3A SINE B2 -143 55 1 5 1581 431 281 10 0 chr5 130665419 130665515 -21871744 - RSINE1 SINE B4 -68 97 1 5 1581 308 286 11 35 chr5 130665523 130665610 -21871649 - ID_B1 SINE B4 -8 216 132 5 1581 521 268 76 76 chr5 130665600 130665810 -21871449 - B3A SINE B2 -6 210 1 5 1581 491 234 81 0 chr5 130665837 130665948 -21871311 - ID_B1 SINE B4 -71 153 34 5 1581 231 234 172 0 chr5 130665903 130665967 -21871292 - ID4_ SINE ID -6 77 3 5 1581 919 229 20 0 chr5 130666012 130666213 -21871046 - B3 SINE B2 -11 205 1 5 1581 512 284 32 6 chr5 130666227 130666383 -21870876 - RSINE1 SINE B4 -1 164 5 5 1581 363 247 112 0 chr5 130666413 130666502 -21870757 - PB1D7 SINE Alu -9 111 13 5 1581 226 366 0 111 chr5 130666427 130666553 -21870706 - ID_B1 SINE B4 -57 167 56 5 1581 1212 61 0 0 chr5 130667462 130667609 -21869650 + B1_Mus2 SINE Alu 1 147 0 5 1581 428 333 6 25 chr5 130667631 130667791 -21869468 + RSINE1 SINE B4 4 160 -5 5 1581 213 353 0 29 chr5 130668054 130668124 -21869135 - ID4 SINE ID -14 69 2 5 1581 285 252 140 10 chr5 130668129 130668229 -21869030 - B1F SINE Alu -7 142 30 5 1581 243 79 0 0 chr5 130668583 130668621 -21868638 + (TG)n Simple_repeat Simple_repeat 1 38 0 5 1581 927 258 56 56 chr5 130668621 130668908 -21868351 - B4A SINE B4 0 292 6 5 1581 621 266 115 29 chr5 130669151 130669325 -21867934 - B3A SINE B2 -1 197 9 5 1581 1121 66 0 0 chr5 130669386 130669522 -21867737 + B1_Mus1 SINE Alu 2 137 -11 5 1581 252 0 0 0 chr5 130669522 130669550 -21867709 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5 1581 245 316 69 40 chr5 130669558 130669676 -21867583 + MIRb SINE MIR 5 129 -147 5 1581 302 220 242 0 chr5 130670105 130670196 -21867063 - PB1D7 SINE Alu -7 113 1 5 1581 218 245 140 122 chr5 130670360 130670467 -21866792 + MIRb SINE MIR 35 143 -125 5 1581 1166 69 7 0 chr5 130670579 130670723 -21866536 - B1_Mm SINE Alu 0 147 3 5 1581 2401 135 5 19 chr5 130670841 130671219 -21866040 - RLTR16 LTR ERVK -120 385 13 5 1581 292 240 123 8 chr5 130671219 130671341 -21865918 - L1MC LINE L1 -3627 2519 2384 5 1581 456 202 28 28 chr5 130671410 130671517 -21865742 - PB1D10 SINE Alu -10 107 1 5 1581 314 116 39 8 chr5 130671642 130671693 -21865566 - ORR1A4 LTR MaLR -8 366 274 5 1581 186 43 0 0 chr5 130671820 130671843 -21865416 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 5 1581 337 290 99 40 chr5 130671899 130671916 -21865343 + ID_B1 SINE B4 65 224 0 5 1581 535 188 8 127 chr5 130671916 130672050 -21865209 + PB1D9 SINE Alu 2 119 -1 5 1581 543 277 35 14 chr5 130672219 130672362 -21864897 - B1F1 SINE Alu -3 146 1 5 1581 270 357 53 45 chr5 130672627 130672759 -21864500 - RSINE1 SINE B4 -29 136 4 5 1581 22 0 0 0 chr5 130672773 130672795 -21864464 + AT_rich Low_complexity Low_complexity 1 22 0 5 1581 554 72 0 67 chr5 130672993 130673097 -21864162 - Lx LINE L1 0 6654 6558 5 1581 304 196 95 32 chr5 130673126 130673221 -21864038 - PB1D9 SINE Alu -18 102 2 5 1581 320 336 19 9 chr5 130673269 130673374 -21863885 - RSINE1 SINE B4 -45 120 15 5 1581 226 304 83 60 chr5 130673374 130673507 -21863752 + YREP_Mm Unknown Unknown 159 294 -1518 5 1581 722 232 59 49 chr5 130673395 130673599 -21863660 - ID_B1 SINE B4 -7 217 12 5 1581 524 165 181 9 chr5 130674339 130674455 -21862804 - B1_Mur1 SINE Alu -10 139 4 5 1581 180 308 45 15 chr5 130674508 130674574 -21862685 - MIR3 SINE MIR -15 193 126 5 1581 307 289 24 12 chr5 130674661 130674745 -21862514 - PB1D10 SINE Alu -29 88 4 5 1581 235 336 34 86 chr5 130674745 130674773 -21862486 - ID_B1 SINE B4 -48 171 66 5 1581 396 0 0 0 chr5 130675276 130675320 -21861939 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1581 664 226 30 0 chr5 130675581 130675714 -21861545 + B1_Mur1 SINE Alu 1 137 -12 5 1581 1241 41 0 0 chr5 130675750 130675895 -21861364 - B1_Mus2 SINE Alu -1 146 2 5 1581 679 263 25 6 chr5 130676180 130676337 -21860922 - RSINE1 SINE B4 0 165 6 5 1581 642 220 176 65 chr5 130677200 130677370 -21859889 - B3A SINE B2 -3 192 4 5 1581 291 286 115 25 chr5 130677417 130677539 -21859720 - PB1D10 SINE Alu -5 144 1 5 1581 579 183 76 25 chr5 130677630 130677748 -21859511 + B1F SINE Alu 23 146 -3 5 1581 485 327 32 23 chr5 130677779 130677995 -21859264 + ID_B1 SINE B4 7 224 0 5 1581 697 153 40 16 chr5 130677871 130677997 -21859262 + B1_Mur4 SINE Alu 22 150 0 5 1581 198 0 0 0 chr5 130677997 130678019 -21859240 + (GA)n Simple_repeat Simple_repeat 1 22 0 5 1581 911 78 0 8 chr5 130678027 130678157 -21859102 + (GAAAA)n Simple_repeat Simple_repeat 3 131 0 5 1581 1312 77 16 6 chr5 130678157 130678330 -21858929 + B2_Mm2 SINE B2 15 190 -5 5 1581 189 0 0 0 chr5 130678673 130678694 -21858565 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1581 189 0 0 0 chr5 130678736 130678757 -21858502 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1582 243 0 0 0 chr5 130678799 130678826 -21858433 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1582 222 37 0 0 chr5 130678868 130678895 -21858364 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1582 315 0 0 0 chr5 130678939 130678974 -21858285 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1582 442 196 59 59 chr5 130679071 130679190 -21858069 + PB1D9 SINE Alu 1 119 -1 5 1582 21 57 0 0 chr5 130679345 130679380 -21857879 + AT_rich Low_complexity Low_complexity 1 35 0 5 1582 1343 64 17 0 chr5 130679470 130679643 -21857616 - B2_Mm2 SINE B2 -5 190 15 5 1582 747 62 0 0 chr5 130679643 130679740 -21857519 + (TTTTC)n Simple_repeat Simple_repeat 5 101 0 5 1582 791 160 100 25 chr5 130679740 130679900 -21857359 - B3 SINE B2 -43 173 2 5 1582 612 184 9 44 chr5 130679930 130680044 -21857215 + PB1D9 SINE Alu 3 112 -8 5 1582 433 298 25 0 chr5 130680191 130680312 -21856947 + PB1 SINE Alu 2 125 -2 5 1582 254 272 147 17 chr5 130680320 130680436 -21856823 + B1_Mur2 SINE Alu 2 132 -17 5 1582 505 220 37 130 chr5 130680721 130680883 -21856376 + B1_Mur1 SINE Alu 2 148 -1 5 1582 928 132 230 0 chr5 130680913 130681087 -21856172 + B3 SINE B2 3 216 0 5 1582 381 240 48 29 chr5 130681299 130681402 -21855857 - PB1D10 SINE Alu -1 116 12 5 1582 338 221 303 0 chr5 130681300 130681422 -21855837 - ID_B1 SINE B4 0 224 66 5 1582 738 150 11 5 chr5 130681736 130681932 -21855327 + (TG)n Simple_repeat Simple_repeat 1 197 0 5 1582 620 247 11 58 chr5 130681935 130682124 -21855135 - B3A SINE B2 -16 182 3 6 1582 261 293 0 42 chr5 130682125 130682221 -21855038 + L1MA6 LINE L1 6065 6156 -144 6 1582 1226 71 100 0 chr5 130682555 130682725 -21854534 + B2_Mm2 SINE B2 3 189 -6 6 1582 217 119 48 0 chr5 130683604 130683646 -21853613 + T-rich Low_complexity Low_complexity 1 44 0 6 1582 791 196 212 0 chr5 130683646 130683830 -21853429 - ID_B1 SINE B4 0 224 2 6 1582 582 273 29 35 chr5 130685067 130685238 -21852021 - MTEa LTR MaLR 0 379 210 6 1582 835 216 39 20 chr5 130685244 130685447 -21851812 - B3 SINE B2 -6 210 4 6 1582 519 196 39 0 chr5 130685461 130685563 -21851696 - PB1D10 SINE Alu -5 112 7 6 1582 615 277 73 6 chr5 130685551 130685729 -21851530 - MTEa LTR MaLR -189 190 1 6 1582 235 239 0 0 chr5 130686471 130686517 -21850742 + CT-rich Low_complexity Low_complexity 2 47 0 6 1582 624 150 24 65 chr5 130686517 130686644 -21850615 - B1_Mur1 SINE Alu 0 147 31 6 1582 21 71 0 0 chr5 130686730 130686772 -21850487 + AT_rich Low_complexity Low_complexity 1 42 0 6 1582 670 188 9 0 chr5 130686804 130686916 -21850343 - B3 SINE B2 -103 113 1 6 1582 333 0 0 0 chr5 130686930 130686967 -21850292 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 6 1582 1179 37 0 0 chr5 130686969 130687105 -21850154 - B1_Mus2 SINE Alu -11 136 1 6 1582 502 235 67 42 chr5 130687167 130687287 -21849972 - RSINE1 SINE B4 -40 125 3 6 1582 271 262 222 46 chr5 130687535 130687643 -21849616 + ID_B1 SINE B4 98 224 0 6 1582 344 278 10 58 chr5 130688232 130688335 -21848924 + B1F SINE Alu 1 98 -51 6 1582 1279 41 0 0 chr5 130688349 130688496 -21848763 - B1_Mm SINE Alu 0 147 1 6 1582 350 194 30 0 chr5 130688554 130688621 -21848638 + tRNA-Ala-GCY_ tRNA tRNA 1 69 -6 6 1582 595 226 169 30 chr5 130689806 130690043 -21847216 + B4 SINE B4 5 274 -18 6 1582 371 250 8 94 chr5 130690221 130690349 -21846910 - PB1D10 SINE Alu 0 117 1 6 1582 425 291 45 19 chr5 130690545 130690689 -21846570 - MER20 DNA MER1_type 0 219 69 6 1582 567 228 18 0 chr5 130690704 130690818 -21846441 + ID_B1 SINE B4 88 203 -21 6 1582 792 229 35 55 chr5 130691261 130691460 -21845799 - B3A SINE B2 0 198 4 6 1582 871 242 75 38 chr5 130691612 130691878 -21845381 + B4 SINE B4 3 278 -14 6 1582 613 148 104 24 chr5 130692252 130692377 -21844882 + B1_Mus2 SINE Alu 2 136 -11 6 1582 192 40 0 0 chr5 130692377 130692402 -21844857 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1582 893 124 185 6 chr5 130692562 130692724 -21844535 + B2_Mm2 SINE B2 2 192 -3 6 1582 247 295 148 105 chr5 130692804 130693062 -21844197 - ORR1E LTR MaLR -14 405 148 6 1582 323 318 82 34 chr5 130693518 130693726 -21843533 - RMER15 LTR ERVL -18 557 340 6 1582 186 118 0 0 chr5 130694335 130694369 -21842890 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1582 571 203 0 95 chr5 130694901 130695048 -21842211 - B1_Mur4 SINE Alu 0 150 18 6 1582 233 302 111 53 chr5 130694954 130695125 -21842134 + MTE-int LTR MaLR 786 966 -614 6 1582 413 126 207 0 chr5 130695125 130695212 -21842047 + Lx3B LINE L1 6869 6973 0 6 1582 1932 162 57 27 chr5 130696271 130696640 -21840619 - ORR1C2 LTR MaLR 0 384 5 6 1582 354 308 30 15 chr5 130697042 130697177 -21840082 + RMER15 LTR ERVL 347 483 -92 6 1582 478 240 144 0 chr5 130697265 130697369 -21839890 + B1_Mus1 SINE Alu 18 136 -12 6 1582 730 218 35 0 chr5 130697396 130697538 -21839721 - B1_Mus1 SINE Alu 0 148 2 6 1582 28 29 0 0 chr5 130698350 130698385 -21838874 + GC_rich Low_complexity Low_complexity 1 35 0 6 1582 684 262 20 60 chr5 130698722 130698921 -21838338 - B3A SINE B2 -7 191 1 6 1582 432 0 0 0 chr5 130698923 130698971 -21838288 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1582 369 58 0 0 chr5 130698973 130699025 -21838234 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1582 365 274 68 0 chr5 130699092 130699209 -21838050 - B1F1 SINE Alu -13 136 12 6 1582 336 324 29 7 chr5 130699209 130699229 -21838030 - ID_B1 SINE B4 -13 211 72 6 1582 272 291 135 9 chr5 130699273 130699384 -21837875 - ID_B1 SINE B4 -18 206 82 6 1582 433 219 114 30 chr5 130699407 130699539 -21837720 - ID_B1 SINE B4 0 224 82 6 1582 219 241 191 12 chr5 130700035 130700119 -21837140 - B3 SINE B2 -117 99 1 6 1582 1339 70 26 26 chr5 130700503 130700695 -21836564 - B2_Mm2 SINE B2 -2 193 2 6 1582 317 51 0 0 chr5 130700731 130700779 -21836480 - B1_Mm SINE Alu 0 147 73 6 1582 499 280 30 54 chr5 130700838 130701004 -21836255 - RSINE1 SINE B4 -1 164 3 6 1582 1192 128 26 11 chr5 130701011 130701200 -21836059 - B2_Mm1t SINE B2 0 193 2 6 1582 759 146 88 0 chr5 130701691 130701828 -21835431 - B1_Mur4 SINE Alu -1 149 1 6 1582 1134 89 0 7 chr5 130701857 130702004 -21835255 - B1_Mm SINE Alu 0 147 2 6 1582 1046 74 14 0 chr5 130702021 130702169 -21835090 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 6 1582 221 0 35 0 chr5 130702187 130702216 -21835043 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 6 1582 698 199 19 58 chr5 130702218 130702373 -21834886 - B1_Mur1 SINE Alu 0 149 1 6 1582 293 215 151 85 chr5 130702502 130702528 -21834731 + B1F1 SINE Alu 2 58 -91 6 1582 311 167 121 0 chr5 130702528 130702594 -21834665 + ID_B1 SINE B4 98 171 -53 6 1582 293 215 151 85 chr5 130702594 130702620 -21834639 + B1F1 SINE Alu 59 120 -29 6 1582 718 221 14 0 chr5 130702816 130702961 -21834298 + ID_B1 SINE B4 52 198 -26 6 1582 733 255 38 0 chr5 130702983 130703167 -21834092 + B3A SINE B2 2 192 -6 6 1582 619 259 7 14 chr5 130703402 130703543 -21833716 + B1_Mur1 SINE Alu 10 149 0 6 1582 387 260 70 0 chr5 130703905 130704005 -21833254 + PB1D10 SINE Alu 1 107 -10 6 1582 1765 171 138 21 chr5 130704106 130704483 -21832776 - MTC LTR MaLR 0 421 1 6 1582 326 347 77 15 chr5 130704587 130704783 -21832476 + L1M5 LINE L1 4142 4349 -1797 6 1582 572 247 115 5 chr5 130704795 130704864 -21832395 - ID_B1 SINE B4 -11 213 132 6 1582 225 0 0 0 chr5 130704864 130704889 -21832370 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 6 1582 572 247 115 5 chr5 130704889 130705010 -21832249 - ID_B1 SINE B4 -93 131 3 6 1582 298 306 167 16 chr5 130705044 130705170 -21832089 - ID_B1 SINE B4 0 224 80 6 1582 225 0 0 0 chr5 130705545 130705570 -21831689 + (TG)n Simple_repeat Simple_repeat 1 25 0 6 1582 403 184 9 84 chr5 130705597 130705704 -21831555 - PB1D7 SINE Alu -19 101 3 6 1582 284 192 0 0 chr5 130705708 130705760 -21831499 - ID_B1 SINE B4 -4 220 169 6 1582 284 221 89 25 chr5 130705760 130705785 -21831474 - PB1D7 SINE Alu -3 115 34 6 1582 527 248 0 0 chr5 130705954 130706063 -21831196 + PB1D10 SINE Alu 3 111 -6 6 1582 383 284 11 0 chr5 130706294 130706389 -21830870 - PB1D9 SINE Alu -15 105 10 6 1582 183 42 0 0 chr5 130706391 130706415 -21830844 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 6 1582 637 186 51 8 chr5 130706416 130706546 -21830713 - B3 SINE B2 -14 202 75 6 1582 281 226 32 0 chr5 130706532 130706594 -21830665 + B3 SINE B2 151 214 -2 6 1582 465 145 13 0 chr5 130706686 130706762 -21830497 - B1_Mus2 SINE Alu -2 145 69 6 1582 1248 40 0 0 chr5 130706822 130706970 -21830289 - B1_Mus1 SINE Alu 0 148 1 6 1582 564 214 232 8 chr5 130706970 130707149 -21830110 - B3 SINE B2 -3 213 2 6 1582 635 174 212 6 chr5 130707170 130707349 -21829910 - B3 SINE B2 0 216 1 6 1582 250 311 14 0 chr5 130708114 130708188 -21829071 + ID4 SINE ID 1 75 -8 6 1582 262 254 0 0 chr5 130708252 130708311 -21828948 + Tigger2b DNA MER2_type 4 62 -664 6 1582 875 208 34 29 chr5 130708324 130708532 -21828727 - B3 SINE B2 -6 210 2 6 1582 247 315 27 0 chr5 130708605 130708678 -21828581 + PB1D10 SINE Alu 1 75 -42 6 1582 879 146 7 20 chr5 130708702 130708849 -21828410 + B1_Mur2 SINE Alu 5 149 0 6 1582 284 236 111 0 chr5 130708889 130708961 -21828298 + ID_B1 SINE B4 119 198 -26 6 1582 825 259 107 48 chr5 130708999 130709336 -21827923 + Tigger2b DNA MER2_type 361 717 -9 6 1582 1167 174 242 9 chr5 130709471 130709786 -21827473 - RMER10B LTR ERVL 0 398 12 6 1582 232 273 29 43 chr5 130709844 130709913 -21827346 - ID4 SINE ID -1 82 15 6 1582 26 0 0 0 chr5 130709913 130709939 -21827320 + AT_rich Low_complexity Low_complexity 1 26 0 6 1582 535 228 156 32 chr5 130709939 130710125 -21827134 - B3 SINE B2 -7 209 1 6 1582 293 237 53 0 chr5 130710263 130710339 -21826920 + ID4_ SINE ID 3 82 -1 6 1582 1645 188 112 16 chr5 130710367 130710465 -21826794 + MTC LTR MaLR 1 122 -299 6 1582 288 0 0 0 chr5 130710465 130710497 -21826762 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1582 1645 188 112 16 chr5 130710497 130710782 -21826477 + MTC LTR MaLR 123 421 0 6 1582 222 242 66 0 chr5 130710918 130711009 -21826250 + (TCTCTG)n Simple_repeat Simple_repeat 2 98 0 6 1582 698 195 164 22 chr5 130711323 130711548 -21825711 - ORR1D1 LTR MaLR 0 374 118 6 1582 736 162 7 51 chr5 130711543 130711680 -21825579 - B1_Mur3 SINE Alu -16 133 3 6 1582 633 171 15 37 chr5 130711680 130711802 -21825457 - ORR1D1 LTR MaLR -255 119 1 6 1582 1216 21 0 7 chr5 130712059 130712200 -21825059 + B1_Mm SINE Alu 2 141 -6 6 1582 447 239 79 9 chr5 130712835 130712949 -21824310 - RSINE1 SINE B4 -32 133 12 6 1582 639 218 42 0 chr5 130713021 130713094 -21824165 + ID SINE ID 7 85 -139 6 1582 358 216 147 0 chr5 130713094 130713196 -21824063 + PB1D10 SINE Alu 1 117 0 6 1582 1162 42 0 27 chr5 130713200 130713337 -21823922 + B1_Mus1 SINE Alu 2 137 -11 6 1582 291 28 0 0 chr5 130713337 130713373 -21823886 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 7 1582 35 63 0 0 chr5 130713590 130713653 -21823606 + AT_rich Low_complexity Low_complexity 1 63 0 7 1582 531 254 55 27 chr5 130713698 130713844 -21823415 - ID_B1 SINE B4 -4 220 71 7 1582 192 135 0 0 chr5 130714321 130714358 -21822901 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1582 1422 64 32 0 chr5 130714434 130714621 -21822638 - B2_Mm1t SINE B2 0 193 1 7 1582 521 261 0 9 chr5 130714889 130715005 -21822254 - PB1D10 SINE Alu 0 117 3 7 1582 729 226 102 0 chr5 130715370 130715547 -21821712 + B3A SINE B2 1 195 -3 7 1582 477 192 109 0 chr5 130715588 130715692 -21821567 + B1F SINE Alu 19 132 -17 7 1582 288 225 113 0 chr5 130716083 130716154 -21821105 + ID4_ SINE ID 1 79 -4 7 1582 916 249 34 0 chr5 130716548 130716757 -21820502 + ID_B1 SINE B4 3 218 -6 7 1582 540 229 19 0 chr5 130716768 130716873 -21820386 + PB1D9 SINE Alu 2 108 -12 7 1582 381 43 0 0 chr5 130716875 130716922 -21820337 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 7 1582 454 248 0 0 chr5 130718344 130718445 -21818814 + PB1D10 SINE Alu 5 105 -12 7 1582 238 274 0 0 chr5 130719794 130719845 -21817414 + ZP3AR Satellite Satellite 24 74 -138 7 1582 453 224 194 0 chr5 130719966 130720100 -21817159 + B3A SINE B2 3 162 -36 7 1582 303 268 11 23 chr5 130720450 130720538 -21816721 + PB1D10 SINE Alu 4 90 -27 7 1582 508 277 35 28 chr5 130720564 130720705 -21816554 - B1_Mur1 SINE Alu -2 147 6 7 1582 350 305 37 22 chr5 130720710 130720844 -21816415 - RSINE1 SINE B4 -2 163 28 7 1582 237 218 18 18 chr5 130720988 130721044 -21816215 + AluF_3 SINE Alu 143 198 -113 7 1582 621 129 67 25 chr5 130721121 130721240 -21816019 - B1_Mus1 SINE Alu -3 145 22 7 1582 322 177 24 71 chr5 130721164 130721249 -21816010 - MT2B LTR ERVL -344 257 177 7 1582 560 237 201 29 chr5 130721353 130721557 -21815702 + MTEb LTR MaLR 141 379 0 7 1582 183 257 65 39 chr5 130722446 130722523 -21814736 + MIRm SINE MIR 35 113 -163 7 1582 2070 112 76 0 chr5 130722528 130722832 -21814427 + ORR1A2 LTR MaLR 1 327 0 7 1582 1030 78 138 0 chr5 130722909 130723076 -21814183 + B2_Mm2 SINE B2 1 190 -5 7 1582 315 0 0 0 chr5 130723141 130723176 -21814083 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1582 402 224 131 10 chr5 130723398 130723497 -21813762 - ID_B1 SINE B4 -36 188 78 7 1582 333 333 82 33 chr5 130723684 130723867 -21813392 + ORR1E LTR MaLR 1 192 -167 7 1582 351 250 25 0 chr5 130724542 130724622 -21812637 + BC1_Mm scRNA scRNA 8 89 -63 7 1582 258 294 35 105 chr5 130724622 130724652 -21812607 + ID_B1 SINE B4 7 108 -116 7 1582 186 43 0 0 chr5 130725364 130725387 -21811872 + (CTTG)n Simple_repeat Simple_repeat 1 23 0 7 1582 234 150 0 0 chr5 130725388 130725428 -21811831 + (T)n Simple_repeat Simple_repeat 1 40 0 7 1582 1060 52 89 0 chr5 130725428 130725563 -21811696 - B1_Mm SINE Alu 0 147 1 7 1582 687 299 75 35 chr5 130725608 130725883 -21811376 - B4A SINE B4 -2 290 2 7 1582 1171 68 0 0 chr5 130726274 130726421 -21810838 + B1_Mus2 SINE Alu 1 147 0 7 1582 180 0 0 0 chr5 130726451 130726471 -21810788 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 7 1582 820 139 7 28 chr5 130727127 130727268 -21809991 + URR1A DNA MER1_type 79 216 -10 7 1582 248 241 35 0 chr5 130727262 130727320 -21809939 + ID4_ SINE ID 15 74 -9 7 1582 428 329 4 81 chr5 130727329 130727368 -21809891 + ID_B1 SINE B4 63 165 -127 7 1582 678 259 14 0 chr5 130727368 130727507 -21809752 + B1F2 SINE Alu 9 149 0 7 1582 428 329 4 81 chr5 130727507 130727540 -21809719 + ID_B1 SINE B4 166 259 -33 7 1582 800 156 42 7 chr5 130727717 130727859 -21809400 + B1_Mur4 SINE Alu 1 147 -3 7 1582 802 76 244 0 chr5 130727942 130728061 -21809198 + B1_Mus1 SINE Alu 1 148 0 7 1582 207 0 0 0 chr5 130728471 130728494 -21808765 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1582 503 315 5 62 chr5 130728658 130728868 -21808391 + B3A SINE B2 1 198 0 7 1582 1155 77 0 0 chr5 130728882 130729025 -21808234 + B1_Mus2 SINE Alu 5 147 0 7 1582 180 0 0 0 chr5 130729025 130729045 -21808214 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1582 725 197 55 0 chr5 130729045 130729172 -21808087 + B1_Mur1 SINE Alu 1 134 -15 7 1582 396 244 33 0 chr5 130729541 130729631 -21807628 + B1F SINE Alu 54 146 -3 7 1582 350 244 64 0 chr5 130730042 130730120 -21807139 + B1F2 SINE Alu 1 83 -66 7 1582 302 125 0 53 chr5 130730121 130730197 -21807062 + A-rich Low_complexity Low_complexity 1 72 0 7 1582 1161 63 0 0 chr5 130730560 130730702 -21806557 - B1_Mus1 SINE Alu -5 143 2 7 1582 514 188 15 100 chr5 130730760 130730797 -21806462 - PB1D7 SINE Alu -1 119 91 7 1582 237 65 0 0 chr5 130730797 130730828 -21806431 + (CA)n Simple_repeat Simple_repeat 1 31 0 7 1582 514 188 15 100 chr5 130730828 130730920 -21806339 - PB1D7 SINE Alu -30 90 1 7 1582 27 0 0 26 chr5 130731591 130731611 -21805648 + AT_rich Low_complexity Low_complexity 1 20 0 7 1582 1319 68 40 0 chr5 130731611 130731788 -21805471 - B2_Mm1a SINE B2 -8 185 2 7 1582 27 0 0 26 chr5 130731788 130731805 -21805454 + AT_rich Low_complexity Low_complexity 1 17 0 7 1582 1182 75 6 6 chr5 130731807 130731968 -21805291 - B2_Mm2 SINE B2 -3 192 32 7 1582 261 234 0 0 chr5 130731968 130732032 -21805227 + (TA)n Simple_repeat Simple_repeat 2 65 0 7 1582 1242 48 0 0 chr5 130732038 130732185 -21805074 - B1_Mus2 SINE Alu 0 147 1 7 1582 546 213 0 27 chr5 130732234 130732345 -21804914 + B1_Mur1 SINE Alu 34 141 -8 7 1582 260 324 14 0 chr5 130732350 130732421 -21804838 - PB1D10 SINE Alu -39 78 7 7 1582 496 199 19 117 chr5 130732454 130732608 -21804651 - B1_Mur2 SINE Alu -10 139 1 7 1582 249 326 11 45 chr5 130733198 130733313 -21803946 - B1F SINE Alu 0 149 43 7 1582 211 312 45 30 chr5 130733301 130733367 -21803892 - B1F1 SINE Alu -18 131 65 7 1582 334 265 11 98 chr5 130733387 130733451 -21803808 - B1F SINE Alu -23 126 70 7 1582 1449 55 39 0 chr5 130733451 130733633 -21803626 + B2_Mm2 SINE B2 1 189 -6 7 1582 334 265 11 98 chr5 130733633 130733660 -21803599 - B1F SINE Alu -80 69 43 7 1582 749 44 283 0 chr5 130733852 130733965 -21803294 + B1_Mus1 SINE Alu 3 147 -1 7 1582 355 87 50 34 chr5 130733967 130734086 -21803173 + A-rich Low_complexity Low_complexity 3 123 0 7 1582 233 347 51 0 chr5 130734181 130734279 -21802980 + B3A SINE B2 4 106 -92 7 1582 510 190 150 33 chr5 130734307 130734421 -21802838 + B1_Mur2 SINE Alu 10 138 -11 7 1582 192 77 0 0 chr5 130734421 130734447 -21802812 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1582 250 221 42 56 chr5 130734478 130734550 -21802709 + PB1D9 SINE Alu 46 116 -4 7 1582 324 0 0 0 chr5 130734596 130734632 -21802627 + (C)n Simple_repeat Simple_repeat 1 36 0 7 1582 740 92 0 0 chr5 130734632 130734730 -21802529 - B1_Mus1 SINE Alu -12 136 39 7 1582 254 303 75 118 chr5 130734730 130734819 -21802440 - B4A SINE B4 -77 215 37 7 1582 442 289 67 28 chr5 130734970 130735148 -21802111 - B3A SINE B2 -3 195 11 7 1582 302 294 29 19 chr5 130735113 130735217 -21802042 - B4A SINE B4 -33 259 155 7 1582 818 96 0 16 chr5 130735238 130735365 -21801894 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 7 1582 982 90 68 0 chr5 130735370 130735503 -21801756 - B1_Mus2 SINE Alu -5 142 1 7 1582 411 38 0 0 chr5 130735505 130735558 -21801701 + (TTTC)n Simple_repeat Simple_repeat 1 53 0 7 1582 462 261 8 42 chr5 130735558 130735678 -21801581 - B4 SINE B4 -159 133 18 7 1582 543 260 59 20 chr5 130735704 130735857 -21801402 - B3 SINE B2 -1 215 57 7 1582 2913 66 52 5 chr5 130735857 130736238 -21801021 - MTB LTR MaLR 0 400 2 7 1582 246 264 167 0 chr5 130736259 130736331 -21800928 - B1F1 SINE Alu -12 137 54 7 1582 1565 48 0 26 chr5 130736407 130736601 -21800658 - B2_Mm2 SINE B2 -5 190 2 7 1582 548 82 0 0 chr5 130736694 130736767 -21800492 - B1_Mur4 SINE Alu 0 150 78 7 1582 586 211 9 17 chr5 130736747 130736863 -21800396 + B1_Mur4 SINE Alu 36 150 0 7 1582 256 221 44 0 chr5 130736882 130736950 -21800309 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 7 1582 456 232 10 10 chr5 130737089 130737183 -21800076 + B4 SINE B4 2 95 -197 7 1582 668 218 8 8 chr5 130737183 130737317 -21799942 + B3A SINE B2 2 135 -63 7 1582 306 0 0 0 chr5 130737336 130737370 -21799889 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1582 2841 108 122 39 chr5 130737607 130738125 -21799134 - L1_Mus2 LINE L1 0 6566 6006 7 1582 313 89 143 0 chr5 130738588 130738644 -21798615 - B1_Mur4 SINE Alu -43 107 44 7 1582 242 56 28 0 chr5 130739143 130739179 -21798080 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 7 1582 357 215 25 210 chr5 130739652 130739852 -21797407 - RSINE1 SINE B4 -2 163 1 7 1582 877 173 74 59 chr5 130739872 130740075 -21797184 - B3 SINE B2 -8 208 3 7 1582 605 277 12 30 chr5 130740297 130740461 -21796798 - RSINE1 SINE B4 -3 162 2 7 1582 228 286 0 28 chr5 130740480 130740552 -21796707 - ID_B1 SINE B4 -5 219 150 7 1582 264 352 164 7 chr5 130740643 130740789 -21796470 - MER21B LTR ERV1 -691 172 4 7 1582 2045 191 58 115 chr5 130741378 130741892 -21795367 + RLTR18B LTR ERVK 25 509 -3 7 1582 297 265 154 19 chr5 130741932 130742036 -21795223 - PB1D9 SINE Alu -2 118 1 7 1582 359 283 21 32 chr5 130741943 130742038 -21795221 - B4 SINE B4 -115 177 84 8 1582 473 283 94 101 chr5 130742138 130742405 -21794854 - B4A SINE B4 -25 267 3 8 1582 26 0 0 0 chr5 130742405 130742431 -21794828 + AT_rich Low_complexity Low_complexity 1 26 0 8 1582 457 274 85 39 chr5 130742452 130742581 -21794678 - RSINE1 SINE B4 -29 136 2 8 1582 429 224 146 110 chr5 130742974 130743112 -21794147 + B3A SINE B2 1 157 -41 8 1582 207 69 0 0 chr5 130743120 130743149 -21794110 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1582 437 215 27 27 chr5 130743288 130743398 -21793861 - PB1D7 SINE Alu -1 119 10 8 1582 968 181 29 39 chr5 130743484 130743691 -21793568 - B3 SINE B2 -4 212 8 8 1582 972 198 91 0 chr5 130744074 130744271 -21792988 - B3 SINE B2 0 216 2 8 1582 345 289 0 24 chr5 130744302 130744387 -21792872 - ID4_ SINE ID 0 83 1 8 1582 1049 83 6 6 chr5 130744387 130744544 -21792715 - ZP3AR Satellite Satellite -11 201 45 8 1582 356 209 25 91 chr5 130744506 130744622 -21792637 - ID_B1 SINE B4 -32 192 84 8 1582 345 279 0 0 chr5 130744622 130744701 -21792558 - ID2 SINE ID -2 81 3 8 1582 410 237 224 22 chr5 130744701 130744835 -21792424 - ID_B1 SINE B4 -2 222 62 8 1582 243 61 0 0 chr5 130744983 130745016 -21792243 + (TC)n Simple_repeat Simple_repeat 1 33 0 8 1582 387 0 0 0 chr5 130745343 130745386 -21791873 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1582 357 125 0 0 chr5 130745387 130745443 -21791816 + (GGGA)n Simple_repeat Simple_repeat 3 58 0 8 1582 525 44 0 0 chr5 130745559 130745627 -21791632 + (GA)n Simple_repeat Simple_repeat 2 69 0 8 1582 198 241 0 33 chr5 130745690 130745780 -21791479 + CT-rich Low_complexity Low_complexity 2 88 0 8 1582 264 200 0 0 chr5 130745797 130745857 -21791402 + CT-rich Low_complexity Low_complexity 4 63 0 8 1582 347 187 0 149 chr5 130745864 130745971 -21791288 - PB1D10 SINE Alu 0 149 30 8 1582 266 239 164 0 chr5 130746627 130746694 -21790565 - ID_B1 SINE B4 -42 182 105 8 1582 258 136 0 0 chr5 130746709 130746753 -21790506 + (T)n Simple_repeat Simple_repeat 1 44 0 8 1582 266 340 10 67 chr5 130746760 130746864 -21790395 - B1F1 SINE Alu -47 102 5 8 1582 303 273 108 50 chr5 130746868 130747007 -21790252 - B1F1 SINE Alu 0 149 3 8 1582 366 123 0 0 chr5 130747074 130747131 -21790128 + (TCG)n Simple_repeat Simple_repeat 2 58 0 8 1582 182 208 19 0 chr5 130747534 130747587 -21789672 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1582 543 309 22 101 chr5 130747587 130747904 -21789355 - B4A SINE B4 0 292 1 8 1582 817 211 67 231 chr5 130748286 130748531 -21788728 - B3 SINE B2 0 216 8 8 1582 198 256 0 65 chr5 130748607 130748653 -21788606 + L3 LINE CR1 4315 4357 -132 8 1582 758 232 47 31 chr5 130748758 130748949 -21788310 - ID_B1 SINE B4 -8 216 23 8 1582 22 0 0 0 chr5 130749369 130749391 -21787868 + AT_rich Low_complexity Low_complexity 1 22 0 8 1582 522 264 107 13 chr5 130749401 130749551 -21787708 - RSINE1 SINE B4 0 165 2 8 1582 816 271 14 33 chr5 130749680 130749894 -21787365 - B3 SINE B2 -1 215 6 8 1582 1166 56 0 14 chr5 130749956 130750101 -21787158 - B1_Mus1 SINE Alu -1 147 5 8 1582 23 0 0 0 chr5 130750107 130750130 -21787129 + AT_rich Low_complexity Low_complexity 1 23 0 8 1582 312 27 0 0 chr5 130750212 130750249 -21787010 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1582 234 0 0 0 chr5 130750249 130750275 -21786984 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1582 235 246 0 16 chr5 130750355 130750417 -21786842 + ID4_ SINE ID 19 79 -4 8 1582 399 278 70 44 chr5 130750859 130751017 -21786242 - RSINE1 SINE B4 0 165 4 8 1582 998 109 0 13 chr5 130751166 130751315 -21785944 + B1_Mur4 SINE Alu 3 149 -1 8 1582 355 215 0 0 chr5 130751916 130751981 -21785278 - ID_B1 SINE B4 -5 219 155 8 1582 205 217 16 48 chr5 130752228 130752291 -21784968 + CT-rich Low_complexity Low_complexity 2 62 0 8 1582 1336 84 10 25 chr5 130752363 130752559 -21784700 - B2_Mm1a SINE B2 0 193 1 8 1582 592 155 39 0 chr5 130752564 130752675 -21784584 - PB1D9 SINE Alu -1 147 9 8 1582 197 304 72 0 chr5 130752708 130752777 -21784482 - MIRc SINE MIR -120 148 75 8 1582 23 0 0 0 chr5 130753424 130753447 -21783812 + AT_rich Low_complexity Low_complexity 1 23 0 8 1582 465 300 42 0 chr5 130753447 130753567 -21783692 + RSINE1 SINE B4 12 136 -29 8 1582 729 259 52 15 chr5 130754530 130754715 -21782544 - ID_B1 SINE B4 -44 248 49 8 1582 592 202 206 12 chr5 130754716 130754876 -21782383 - B3 SINE B2 -25 191 1 8 1582 418 236 124 60 chr5 130754897 130755082 -21782177 - L1MEc LINE L1 -5074 1326 1130 8 1582 792 211 31 72 chr5 130755087 130755281 -21781978 - B2_Mm2 SINE B2 -8 187 2 8 1582 198 0 0 0 chr5 130755297 130755319 -21781940 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1582 955 149 0 20 chr5 130755320 130755471 -21781788 - B1_Mus1 SINE Alu 0 148 1 8 1582 1828 165 53 17 chr5 130755501 130755859 -21781400 - ORR1D1 LTR MaLR -3 371 1 8 1582 255 179 9 215 chr5 130755859 130755905 -21781354 - ORR1D1-int LTR MaLR 0 1370 1343 8 1582 1323 98 38 0 chr5 130755905 130756089 -21781170 - B2_Mm2 SINE B2 -4 191 1 8 1582 255 179 9 215 chr5 130756089 130756149 -21781110 - ORR1D1-int LTR MaLR -28 1342 1286 8 1582 372 205 132 0 chr5 130756164 130756247 -21781012 - RSINE1 SINE B4 -68 97 4 8 1582 247 139 0 0 chr5 130756542 130756578 -21780681 - ORR1D2 LTR MaLR -332 38 3 8 1582 1003 258 142 21 chr5 130756626 130756968 -21780291 + MTD LTR MaLR 18 391 -16 8 1582 625 163 152 16 chr5 130757157 130757282 -21779977 - B1_Mur1 SINE Alu -3 146 5 8 1582 305 279 231 0 chr5 130757771 130757875 -21779384 - RSINE1 SINE B4 -8 157 30 8 1582 445 347 82 28 chr5 130758023 130758331 -21778928 - L1MB5 LINE L1 -184 5994 5676 8 1582 249 246 16 16 chr5 130758392 130758454 -21778805 - L1MB5 LINE L1 -600 5578 5517 8 1582 224 273 55 0 chr5 130758502 130758557 -21778702 - PB1D7 SINE Alu -20 100 43 8 1582 800 232 142 0 chr5 130758567 130758757 -21778502 - ID_B1 SINE B4 0 224 8 8 1582 296 349 109 15 chr5 130758940 130759141 -21778118 - MER20B DNA MER1_type 0 783 564 8 1582 326 246 0 9 chr5 130759203 130759318 -21777941 + CT-rich Low_complexity Low_complexity 2 115 0 8 1582 606 286 82 0 chr5 130759720 130759753 -21777506 - B3A SINE B2 0 198 165 8 1582 342 0 0 0 chr5 130759753 130759791 -21777468 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1582 606 286 82 0 chr5 130759791 130759939 -21777320 - B3A SINE B2 -34 164 3 8 1582 417 250 135 0 chr5 130760256 130760352 -21776907 - PB1D10 SINE Alu -7 110 2 8 1582 576 224 0 33 chr5 130760577 130760697 -21776562 + RSINE1 SINE B4 3 118 -47 8 1582 462 224 154 65 chr5 130760777 130760978 -21776281 + ID_B1 SINE B4 1 219 -5 8 1582 1211 116 33 0 chr5 130761085 130761266 -21775993 + B2_Mm1t SINE B2 1 187 -6 8 1582 643 131 205 0 chr5 130761963 130762085 -21775174 - URR1A DNA MER1_type -79 147 1 8 1582 291 253 19 78 chr5 130762103 130762206 -21775053 + L1MDb LINE L1 931 1027 -5382 8 1582 282 274 0 78 chr5 130762443 130762546 -21774713 + L1MDb LINE L1 1279 1373 -5036 8 1582 353 224 187 0 chr5 130762703 130762810 -21774449 - RSINE1 SINE B4 -35 130 4 8 1582 522 232 50 61 chr5 130762838 130763003 -21774256 + RSINE1 SINE B4 2 165 0 8 1582 765 193 142 138 chr5 130763393 130763646 -21773613 - ORR1B1 LTR MaLR -140 254 1 8 1582 851 233 39 6 chr5 130763670 130763851 -21773408 + B3A SINE B2 1 187 -11 8 1582 908 250 19 0 chr5 130763947 130764163 -21773096 + ID_B1 SINE B4 4 223 -1 8 1582 288 252 481 0 chr5 130764350 130764490 -21772769 + B3 SINE B2 1 208 -8 8 1582 576 253 41 8 chr5 130764844 130764860 -21772399 - ID_B1 SINE B4 -46 246 222 8 1582 214 146 140 40 chr5 130764860 130764910 -21772349 - PB1D10 SINE Alu -1 116 62 8 1582 576 253 41 8 chr5 130764910 130764987 -21772272 - ID_B1 SINE B4 -46 221 95 8 1582 2021 108 146 0 chr5 130765022 130765338 -21771921 - RMER19A LTR ERVK -355 382 21 8 1582 2337 198 38 8 chr5 130765337 130765812 -21771447 - RLTR18B LTR ERVK -23 489 1 8 1582 1251 41 0 0 chr5 130765888 130766035 -21771224 + B1_Mus1 SINE Alu 2 148 0 8 1582 204 40 0 0 chr5 130766035 130766060 -21771199 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1582 552 211 106 95 chr5 130766208 130766397 -21770862 + B3A SINE B2 6 196 -2 8 1582 577 203 17 0 chr5 130766403 130766521 -21770738 + PB1D9 SINE Alu 1 120 0 8 1582 359 121 30 0 chr5 130766527 130766593 -21770666 + (TATG)n Simple_repeat Simple_repeat 1 68 0 8 1582 204 314 148 28 chr5 130766821 130766929 -21770330 - MER5A DNA MER1_type -8 181 61 8 1582 563 177 26 9 chr5 130766960 130767074 -21770185 - PB1D10 SINE Alu 0 117 2 8 1582 183 184 0 0 chr5 130767568 130767606 -21769653 + C-rich Low_complexity Low_complexity 1 38 0 8 1582 1026 196 19 14 chr5 130767748 130767955 -21769304 + ID_B1 SINE B4 5 212 -12 8 1582 204 40 0 0 chr5 130767955 130767980 -21769279 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 8 1582 1166 202 5 0 chr5 130768662 130768865 -21768394 - B3 SINE B2 -12 204 1 8 1582 905 230 111 13 chr5 130768936 130769161 -21768098 + B4 SINE B4 43 289 -3 8 1582 423 263 118 15 chr5 130769307 130769442 -21767817 + B1F SINE Alu 1 149 0 8 1582 581 218 261 0 chr5 130770186 130770351 -21766908 - ID_B1 SINE B4 -16 208 1 8 1582 531 0 0 0 chr5 130770910 130770969 -21766290 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1582 739 262 64 64 chr5 130771106 130771140 -21766119 - B4 SINE B4 -38 254 224 8 1582 180 0 0 0 chr5 130771140 130771160 -21766099 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 8 1582 739 262 64 64 chr5 130771160 130771287 -21765972 - B4 SINE B4 -69 223 88 8 1582 909 169 0 7 chr5 130771287 130771436 -21765823 - B1_Mur2 SINE Alu -1 148 1 9 1582 739 262 64 64 chr5 130771436 130771522 -21765737 - B4 SINE B4 -205 87 6 8 1582 412 216 0 22 chr5 130771616 130771706 -21765553 - PB1D9 SINE Alu -1 119 32 9 1582 21 0 0 0 chr5 130771714 130771735 -21765524 + AT_rich Low_complexity Low_complexity 1 21 0 9 1582 205 158 0 0 chr5 130771735 130771773 -21765486 - MIR SINE MIR -73 189 152 9 1582 248 237 0 33 chr5 130771838 130771899 -21765360 - B4A SINE B4 -35 257 199 9 1582 240 266 0 59 chr5 130771931 130771999 -21765260 - B4 SINE B4 -228 64 1 9 1582 742 235 26 31 chr5 130772013 130772206 -21765053 + B3 SINE B2 2 193 -23 9 1582 360 261 17 43 chr5 130772238 130772275 -21764984 + PB1D7 SINE Alu 5 42 -78 9 1582 405 0 0 0 chr5 130772275 130772320 -21764939 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1582 360 261 17 43 chr5 130772320 130772398 -21764861 + PB1D7 SINE Alu 43 116 -4 9 1582 242 270 162 0 chr5 130772769 130772843 -21764416 - RSINE1 SINE B4 -79 86 1 9 1582 1142 68 0 45 chr5 130773035 130773190 -21764069 - B1_Mus1 SINE Alu 0 148 1 9 1582 719 218 85 79 chr5 130773213 130773402 -21763857 - B3A SINE B2 -3 195 6 9 1582 601 266 37 19 chr5 130773947 130774108 -21763151 - RSINE1 SINE B4 0 165 2 9 1582 244 240 107 141 chr5 130774108 130774136 -21763123 + B4A SINE B4 64 87 -205 9 1582 597 215 57 0 chr5 130774136 130774276 -21762983 + B1F SINE Alu 1 149 0 9 1582 567 43 0 0 chr5 130774284 130774354 -21762905 + (CA)n Simple_repeat Simple_repeat 2 71 0 9 1582 5015 156 81 1 chr5 130774544 130775379 -21761880 - RMER19B LTR ERVK 0 902 1 9 1582 280 259 12 36 chr5 130775539 130775623 -21761636 + ID4_ SINE ID 2 83 0 9 1582 23 33 0 0 chr5 130776009 130776039 -21761220 + AT_rich Low_complexity Low_complexity 1 30 0 9 1582 279 0 0 0 chr5 130776045 130776076 -21761183 + (TG)n Simple_repeat Simple_repeat 2 32 0 9 1582 319 303 50 0 chr5 130776111 130776210 -21761049 - B3 SINE B2 -108 108 5 9 1582 487 244 56 78 chr5 130776191 130776333 -21760926 - B3A SINE B2 -47 148 10 9 1582 1123 89 7 0 chr5 130776356 130776502 -21760757 - B1_Mus1 SINE Alu 0 148 2 9 1582 203 171 0 0 chr5 130776508 130776549 -21760710 + T-rich Low_complexity Low_complexity 1 41 0 9 1582 229 292 112 96 chr5 130776572 130776750 -21760509 - B4A SINE B4 0 292 112 9 1582 711 275 19 68 chr5 130777185 130777348 -21759911 + B3A SINE B2 2 164 -34 9 1582 348 24 0 0 chr5 130777348 130777389 -21759870 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1582 711 275 19 68 chr5 130777389 130777432 -21759827 + B3A SINE B2 165 198 0 9 1582 248 271 34 34 chr5 130777534 130777622 -21759637 + B1_Mur2 SINE Alu 61 148 -1 9 1582 680 256 114 38 chr5 130777788 130778052 -21759207 - B4 SINE B4 -6 286 3 9 1582 795 148 8 8 chr5 130778235 130778364 -21758895 - B1_Mus1 SINE Alu -1 147 19 9 1582 863 153 111 22 chr5 130778367 130778406 -21758853 - B3A SINE B2 -2 196 161 9 1582 378 0 0 0 chr5 130778406 130778448 -21758811 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1582 863 153 111 22 chr5 130778448 130778588 -21758671 - B3A SINE B2 -38 160 2 9 1582 273 140 0 0 chr5 130778816 130778873 -21758386 + (TC)n Simple_repeat Simple_repeat 2 58 0 9 1582 232 250 0 0 chr5 130779946 130779994 -21757265 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1582 405 256 0 0 chr5 130780112 130780194 -21757065 - ID4_ SINE ID -1 82 1 9 1582 23 0 0 0 chr5 130780482 130780505 -21756754 + AT_rich Low_complexity Low_complexity 1 23 0 9 1582 414 233 23 70 chr5 130780505 130780634 -21756625 - B3A SINE B2 -11 187 65 9 1582 312 247 21 31 chr5 130780913 130781009 -21756250 - B3A SINE B2 -1 197 103 9 1582 782 267 25 20 chr5 130781236 130781435 -21755824 + B4A SINE B4 29 228 -64 9 1582 405 255 155 20 chr5 130781436 130781584 -21755675 + B3A SINE B2 2 169 -29 9 1582 1099 153 79 0 chr5 130781823 130782012 -21755247 - B3 SINE B2 -3 213 10 9 1582 408 40 0 0 chr5 130782012 130782062 -21755197 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 9 1582 716 218 8 8 chr5 130782062 130782196 -21755063 - B1F2 SINE Alu -12 137 4 9 1582 297 309 52 21 chr5 130782117 130782213 -21755046 - B4 SINE B4 -125 167 69 9 1582 1204 62 0 0 chr5 130782236 130782382 -21754877 - B1_Mus1 SINE Alu -1 147 2 9 1582 543 147 21 0 chr5 130782403 130782498 -21754761 - ID_B1 SINE B4 0 224 128 9 1582 486 179 104 74 chr5 130782469 130782632 -21754627 + MTD LTR MaLR 250 417 -2 9 1582 238 184 0 0 chr5 130783085 130783134 -21754125 + (TG)n Simple_repeat Simple_repeat 1 49 0 9 1582 527 218 111 14 chr5 130783135 130783279 -21753980 - RSINE1 SINE B4 -1 164 7 9 1582 243 0 0 0 chr5 130784167 130784194 -21753065 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 9 1582 291 54 0 0 chr5 130784317 130784354 -21752905 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 9 1582 261 303 15 15 chr5 130784361 130784428 -21752831 - tRNA-Ala-GCY_ tRNA tRNA -8 67 1 9 1582 1123 103 6 6 chr5 130784404 130784579 -21752680 - ZP3AR Satellite Satellite -34 178 4 9 1582 5072 72 21 49 chr5 130785034 130785245 -21752014 - RMER17A LTR ERVK 0 751 555 9 1582 234 0 0 0 chr5 130785245 130785271 -21751988 + (C)n Simple_repeat Simple_repeat 1 26 0 9 1582 5072 72 21 49 chr5 130785271 130785832 -21751427 - RMER17A LTR ERVK -197 554 1 9 1582 784 251 5 5 chr5 130786097 130786289 -21750970 - B3A SINE B2 -5 193 2 9 1582 995 271 102 16 chr5 130787293 130787597 -21749662 + MTE2b LTR MaLR 45 374 -5 9 1582 700 281 70 39 chr5 130787812 130788071 -21749188 - L1M5 LINE L1 -458 5666 5400 9 1582 563 259 12 81 chr5 130788462 130788529 -21748730 - RSINE1 SINE B4 0 165 108 9 1582 1229 48 0 0 chr5 130788529 130788676 -21748583 - B1_Mus2 SINE Alu 0 147 1 9 1582 563 259 12 81 chr5 130788676 130788780 -21748479 - RSINE1 SINE B4 -58 107 6 9 1582 265 304 51 0 chr5 130788860 130788939 -21748320 + B3A SINE B2 77 159 -39 9 1582 382 236 96 11 chr5 130789117 130789211 -21748048 + B1_Mur1 SINE Alu 47 148 -1 9 1582 342 386 24 18 chr5 130789546 130789712 -21747547 - MER58D DNA MER1_type -219 167 1 9 1582 528 30 0 0 chr5 130789742 130789808 -21747451 + (TG)n Simple_repeat Simple_repeat 1 66 0 9 1582 429 255 69 0 chr5 130789808 130789910 -21747349 - B1F SINE Alu -15 134 26 9 1582 26 50 0 0 chr5 130790014 130790054 -21747205 + AT_rich Low_complexity Low_complexity 1 40 0 9 1582 228 200 35 52 chr5 130790103 130790219 -21747040 + (TTAA)n Simple_repeat Simple_repeat 1 114 0 9 1582 351 0 0 0 chr5 130790255 130790294 -21746965 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1582 508 288 30 0 chr5 130790325 130790457 -21746802 - RSINE1 SINE B4 -27 138 3 9 1582 499 301 111 44 chr5 130790554 130790915 -21746344 - L1M5 LINE L1 -2077 4069 3685 9 1582 713 186 118 6 chr5 130790927 130791105 -21746154 - B3A SINE B2 0 198 1 9 1582 969 174 108 0 chr5 130791153 130791348 -21745911 - B3 SINE B2 0 216 1 9 1582 949 117 0 40 chr5 130791363 130791514 -21745745 + B1_Mur3 SINE Alu 4 148 -1 9 1582 219 347 0 27 chr5 130791999 130792073 -21745186 - RSINE1 SINE B4 -8 157 86 9 1582 463 272 64 98 chr5 130792042 130792278 -21744981 - B4A SINE B4 -41 251 24 9 1582 359 266 248 52 chr5 130792276 130792546 -21744713 - MTE2b LTR MaLR -37 342 20 9 1582 951 190 75 0 chr5 130792766 130792966 -21744293 - B3 SINE B2 -1 215 1 9 1582 402 250 243 27 chr5 130793098 130793320 -21743939 + L1M5 LINE L1 3035 3304 -2842 9 1582 1437 228 30 60 chr5 130793331 130793700 -21743559 - ORR1D1 LTR MaLR -8 366 9 9 1582 214 253 57 102 chr5 130793727 130793815 -21743444 + B3A SINE B2 2 85 -113 9 1582 847 144 0 41 chr5 130794087 130794232 -21743027 - B1_Mur4 SINE Alu 0 150 12 9 1582 577 260 6 71 chr5 130794232 130794269 -21742990 - ID_B1 SINE B4 0 224 55 9 1582 1358 189 79 11 chr5 130794324 130794591 -21742668 + MTD LTR MaLR 5 289 -130 9 1582 2685 141 56 64 chr5 130794607 130794977 -21742282 - RLTR11A LTR ERVK 0 528 161 9 1582 1223 41 0 7 chr5 130794977 130795124 -21742135 - B1_Mus1 SINE Alu -2 146 1 9 1582 1048 70 229 0 chr5 130795133 130795290 -21741969 - B2_Mm2 SINE B2 -1 194 2 9 1582 2685 141 56 64 chr5 130795290 130795441 -21741818 - RLTR11A LTR ERVK -368 160 1 9 1582 371 185 37 28 chr5 130795441 130795524 -21741735 + MTD LTR MaLR 296 405 -14 9 1582 558 201 67 44 chr5 130795548 130795683 -21741576 - B1_Mur1 SINE Alu 0 149 12 9 1582 315 297 47 68 chr5 130795556 130795691 -21741568 - ID_B1 SINE B4 -2 222 88 9 1582 591 201 147 32 chr5 130795691 130795881 -21741378 - B3 SINE B2 -2 214 3 9 1582 315 297 47 68 chr5 130795881 130795893 -21741366 - ID SINE ID -137 87 78 9 1582 296 140 40 0 chr5 130795896 130795946 -21741313 + L1M5 LINE L1 3494 3545 -2601 9 1582 366 248 48 19 chr5 130796034 130796137 -21741122 + ID_B1 SINE B4 86 191 -33 9 1582 356 178 22 6 chr5 130796153 130796230 -21741029 + RSINE1 SINE B4 1 81 -211 9 1582 355 248 68 158 chr5 130796485 130796662 -21740597 - MER20 DNA MER1_type -56 163 3 9 1582 524 240 77 32 chr5 130796815 130796970 -21740289 - B3A SINE B2 -36 162 1 9 1582 633 234 108 5 chr5 130796976 130797161 -21740098 - ID_B1 SINE B4 -12 212 9 9 1582 242 109 36 0 chr5 130797216 130797271 -21739988 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 9 1582 339 309 44 73 chr5 130797323 130797529 -21739730 + MIR SINE MIR 48 247 -15 9 1582 197 189 27 0 chr5 130797497 130797534 -21739725 + L2b LINE L2 3323 3360 -15 9 1582 797 263 52 56 chr5 130797883 130798153 -21739106 - B4A SINE B4 -14 278 10 9 1582 386 230 111 10 chr5 130798344 130798442 -21738817 - B1F SINE Alu -29 120 15 9 1582 201 147 0 0 chr5 130798613 130798647 -21738612 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1582 267 54 0 0 chr5 130798826 130798863 -21738396 + (TG)n Simple_repeat Simple_repeat 1 37 0 9 1582 724 268 6 19 chr5 130798868 130799028 -21738231 - B3A SINE B2 -39 159 2 1 1582 198 294 65 47 chr5 130799519 130799626 -21737633 + L2 LINE L2 184 292 -3127 1 1582 234 0 0 0 chr5 130799656 130799682 -21737577 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1582 1168 68 0 20 chr5 130799799 130799938 -21737321 + B1_Mm SINE Alu 1 139 -8 1 1582 207 0 0 0 chr5 130799938 130799961 -21737298 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1582 994 228 23 42 chr5 130800251 130800466 -21736793 - B3A SINE B2 0 216 6 1 1582 312 296 0 0 chr5 130800605 130800693 -21736566 + (TG)n Simple_repeat Simple_repeat 2 89 0 1 1582 587 275 24 36 chr5 130800694 130800860 -21736399 - RSINE1 SINE B4 0 165 2 1 1582 456 35 0 0 chr5 130800883 130800941 -21736318 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1582 423 250 167 42 chr5 130801074 130801266 -21735993 + B3 SINE B2 1 216 0 1 1582 235 171 0 0 chr5 130801273 130801308 -21735951 - tRNA-Lys-AAG tRNA tRNA -41 35 1 1 1582 313 183 14 40 chr5 130801755 130801829 -21735430 + B3A SINE B2 1 72 -126 1 1582 435 38 0 0 chr5 130802307 130802360 -21734899 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 1 1582 276 30 0 0 chr5 130802364 130802397 -21734862 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 1 1582 400 169 0 27 chr5 130802399 130802472 -21734787 - B1F SINE Alu 0 149 79 1 1582 533 261 127 40 chr5 130802593 130802797 -21734462 + ID_B1 SINE B4 71 292 0 1 1582 333 68 0 0 chr5 130802802 130802846 -21734413 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1 1582 3427 64 2 31 chr5 130802865 130803317 -21733942 - L1_Mus1 LINE L1 -1 6566 6128 1 1582 201 175 0 0 chr5 130804026 130804066 -21733193 + CT-rich Low_complexity Low_complexity 4 43 0 1 1582 326 282 43 112 chr5 130804122 130804156 -21733103 - PB1D9 SINE Alu -3 117 10 1 1582 501 195 0 0 chr5 130804156 130804238 -21733021 - ID_B1 SINE B4 -52 172 91 1 1582 456 276 0 19 chr5 130804636 130804743 -21732516 - RSINE1 SINE B4 -59 106 2 1 1582 262 339 0 0 chr5 130804744 130804853 -21732406 - L1M2 LINE L1 -512 5785 5677 1 1582 345 281 43 9 chr5 130804969 130805084 -21732175 - B1F SINE Alu -13 136 18 1 1582 322 310 15 30 chr5 130805084 130805102 -21732157 - ID_B1 SINE B4 -13 211 81 1 1582 359 234 0 0 chr5 130805125 130805202 -21732057 + ID4 SINE ID 2 78 -5 1 1582 398 202 146 39 chr5 130805306 130805409 -21731850 + PB1D7 SINE Alu 6 119 -1 1 1582 245 258 218 36 chr5 130805437 130805602 -21731657 + B3A SINE B2 4 198 0 1 1582 374 217 244 15 chr5 130806223 130806354 -21730905 + RSINE1 SINE B4 3 163 -2 1 1582 529 301 12 50 chr5 130806597 130806758 -21730501 - RSINE1 SINE B4 -2 163 9 1 1582 367 233 38 19 chr5 130806845 130806950 -21730309 - PB1D10 SINE Alu 0 117 11 1 1582 420 289 70 45 chr5 130807031 130807317 -21729942 + Tigger16a DNA Tigger 622 914 -19 1 1582 267 154 0 0 chr5 130807477 130807516 -21729743 + G-rich Low_complexity Low_complexity 6 44 0 1 1582 579 242 41 8 chr5 130807791 130807912 -21729347 - B1_Mur1 SINE Alu -1 148 24 1 1582 668 123 9 0 chr5 130807912 130808026 -21729233 + (TG)n Simple_repeat Simple_repeat 1 115 0 1 1582 453 279 36 58 chr5 130808026 130808041 -21729218 - B1F SINE Alu -122 27 15 1 1582 240 347 40 30 chr5 130808279 130808380 -21728879 - RMER4A LTR ERVK -343 123 22 1 1582 418 255 20 20 chr5 130808612 130808712 -21728547 - MTEb LTR MaLR -263 116 17 1 1582 583 270 129 0 chr5 130808767 130808930 -21728329 + ID_B1 SINE B4 21 204 -20 1 1582 354 98 0 0 chr5 130809217 130809268 -21727991 + (TCC)n Simple_repeat Simple_repeat 3 53 0 1 197 474 219 9 40 chr5 130809715 130809940 -21727319 + (TG)n Simple_repeat Simple_repeat 1 218 0 1 1583 368 203 138 54 chr5 130810023 130810153 -21727106 + ID_B1 SINE B4 82 222 -2 1 1583 580 162 161 6 chr5 130810423 130810603 -21726656 - Lx9 LINE L1 -1 7643 7436 1 1583 1420 193 143 12 chr5 130810721 130811056 -21726203 - MTEa LTR MaLR 0 379 1 1 1583 327 257 70 44 chr5 130811487 130811601 -21725658 - B3A SINE B2 0 198 82 1 1583 578 234 47 0 chr5 130811641 130811769 -21725490 + RSINE1 SINE B4 2 135 -30 1 1583 1033 149 6 0 chr5 130813050 130813218 -21724041 - URR1A DNA MER1_type 0 226 58 1 1583 240 35 0 0 chr5 130813257 130813286 -21723973 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1583 1164 82 0 0 chr5 130813286 130813433 -21723826 - B1_Mus2 SINE Alu 0 147 1 1 1583 841 230 20 20 chr5 130813472 130813667 -21723592 - B3A SINE B2 0 198 4 1 1583 755 190 0 42 chr5 130813684 130813827 -21723432 - ID_B1 SINE B4 -6 218 82 1 1583 480 35 0 0 chr5 130814218 130814276 -21722983 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1583 723 286 12 0 chr5 130814279 130814450 -21722809 - B3A SINE B2 -24 174 2 1 1583 427 191 0 0 chr5 130814455 130814539 -21722720 - PB1D10 SINE Alu -5 112 29 1 1583 222 170 0 86 chr5 130815130 130815188 -21722071 + T-rich Low_complexity Low_complexity 1 53 0 1 1583 554 85 84 9 chr5 130815208 130815315 -21721944 - Lx9 LINE L1 -62 7582 7468 1 1583 217 271 143 0 chr5 130815324 130815394 -21721865 - B1F1 SINE Alu -69 80 1 1 1583 857 238 62 0 chr5 130815531 130815741 -21721518 - ID_B1 SINE B4 0 224 2 1 1583 503 270 45 27 chr5 130815788 130815992 -21721267 - B3A SINE B2 -1 215 1 1 1583 2435 166 40 0 chr5 130816006 130816409 -21720850 - MTD LTR MaLR 0 419 1 1 1583 304 208 21 42 chr5 130817059 130817166 -21720093 - B1F SINE Alu -8 109 7 1 1583 227 271 14 0 chr5 130817115 130817185 -21720074 - ID_B1 SINE B4 -86 138 68 1 1583 389 241 0 33 chr5 130817308 130817398 -21719861 - B3A SINE B2 -17 181 95 1 1583 1241 40 0 13 chr5 130817665 130817815 -21719444 - B1_Mus1 SINE Alu 0 148 1 1 1583 552 287 155 33 chr5 130818252 130818497 -21718762 - B4A SINE B4 -10 282 8 1 1583 257 250 68 14 chr5 130818494 130818567 -21718692 - B1F SINE Alu -63 86 10 1 1583 682 272 78 24 chr5 130818626 130818822 -21718437 + B3A SINE B2 2 195 0 1 1583 330 261 14 0 chr5 130818961 130819030 -21718229 + ID_B1 SINE B4 134 203 -21 1 1583 229 274 129 0 chr5 130819043 130819105 -21718154 + B4A SINE B4 9 78 -214 1 1583 687 232 15 72 chr5 130819593 130819781 -21717478 + B4A SINE B4 1 177 -115 1 1583 537 236 362 5 chr5 130819781 130820002 -21717257 - ORR1D2 LTR MaLR -2 368 69 1 1583 231 211 19 19 chr5 130820046 130820099 -21717160 - ORR1D2 LTR MaLR -283 87 35 1 1583 295 333 11 0 chr5 130820289 130820382 -21716877 - L2 LINE L2 -577 2842 2749 1 1583 225 0 0 0 chr5 130820462 130820487 -21716772 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1583 307 286 155 0 chr5 130820829 130820997 -21716262 + B3A SINE B2 5 198 0 1 1583 352 191 0 0 chr5 130821191 130821254 -21716005 - B4 SINE B4 -6 286 224 1 1583 1579 107 7 13 chr5 130821239 130821594 -21715665 - ZP3AR Satellite Satellite -29 352 1 1 1583 217 217 43 0 chr5 130822518 130822564 -21714695 - ID4 SINE ID -2 81 34 1 1583 334 295 72 86 chr5 130822606 130822890 -21714369 - MTEa LTR MaLR 0 379 111 1 1583 1312 171 14 5 chr5 130822890 130823113 -21714146 - URR1B DNA MER1_type 0 225 1 1 1583 308 308 104 121 chr5 130823113 130823186 -21714073 - MTEa LTR MaLR -274 110 32 1 1583 1123 69 0 0 chr5 130823186 130823330 -21713929 + B1_Mus1 SINE Alu 3 146 -2 1 1583 234 62 0 0 chr5 130823330 130823362 -21713897 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1 1583 694 241 140 100 chr5 130823372 130823722 -21713537 - ORR1D2 LTR MaLR -2 368 5 1 1583 548 206 19 10 chr5 130824421 130824524 -21712735 + B3 SINE B2 112 215 -1 1 1583 237 33 0 0 chr5 130824573 130824603 -21712656 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1583 779 259 2 2 chr5 130824645 130824799 -21712460 - RSINE1 SINE B4 -4 161 7 1 1583 1072 209 30 52 chr5 130824817 130825049 -21712210 - B4 SINE B4 -63 229 3 1 1583 1266 21 7 0 chr5 130825140 130825284 -21711975 + B1_Mm SINE Alu 3 147 0 1 1583 392 163 12 0 chr5 130825500 130825586 -21711673 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1583 2585 169 44 26 chr5 130825967 130826465 -21710794 - RMER20A LTR ERVK 0 516 10 1 1583 815 172 14 20 chr5 130826631 130826779 -21710480 + B1_Mur3 SINE Alu 2 148 -1 1 1583 432 0 0 0 chr5 130826785 130826833 -21710426 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1 1583 441 0 0 0 chr5 130826833 130826881 -21710378 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1583 420 234 237 67 chr5 130826883 130827107 -21710152 - B4 SINE B4 -29 263 2 1 1583 883 258 16 0 chr5 130827118 130827300 -21709959 - ID_B1 SINE B4 -8 216 32 1 1583 264 30 0 0 chr5 130827321 130827354 -21709905 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1583 724 217 0 14 chr5 130828171 130828311 -21708948 + ID_B1 SINE B4 84 221 -3 1 1583 226 308 135 34 chr5 130828192 130828340 -21708919 - YREP_Mm Unknown Unknown -1518 294 132 1 1583 404 297 23 106 chr5 130828417 130828723 -21708536 - B4A SINE B4 -2 290 10 1 1583 367 198 0 44 chr5 130828792 130828882 -21708377 - Lx7 LINE L1 -51 7645 7560 1 1583 752 241 39 115 chr5 130828886 130829009 -21708250 + Lx6 LINE L1 7145 7263 -197 1 1583 896 139 0 40 chr5 130829009 130829159 -21708100 - B1_Mus1 SINE Alu 0 148 5 1 1583 752 241 39 115 chr5 130829159 130829321 -21707938 + Lx6 LINE L1 7264 7408 -52 1 1583 2321 206 147 6 chr5 130829308 130829370 -21707889 - Lx7 LINE L1 -141 7555 7494 1 1583 279 0 0 0 chr5 130829370 130829401 -21707858 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1583 2321 206 147 6 chr5 130829401 130829485 -21707774 - Lx7 LINE L1 -203 7493 7379 1 1583 800 98 16 0 chr5 130829485 130829608 -21707651 + (GAAA)n Simple_repeat Simple_repeat 4 128 0 1 1583 2321 206 147 6 chr5 130829608 130829998 -21707261 - Lx7 LINE L1 -318 7378 6944 1 1583 474 18 0 0 chr5 130830093 130830148 -21707111 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1583 248 267 13 13 chr5 130830193 130830269 -21706990 + ID4 SINE ID 5 80 -3 1 1583 300 146 42 0 chr5 130830348 130830396 -21706863 - RSINE1 SINE B4 -54 111 62 1 1583 582 278 112 27 chr5 130830566 130830693 -21706566 - L1MA4 LINE L1 -382 5918 5789 1 1583 414 0 0 0 chr5 130830693 130830739 -21706520 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1583 582 278 112 27 chr5 130830739 130830907 -21706352 - L1MA4 LINE L1 -512 5788 5599 1 1583 1012 154 17 29 chr5 130830921 130831095 -21706164 - B2_Mm2 SINE B2 -22 173 2 1 1583 268 194 0 82 chr5 130831101 130831174 -21706085 - L1MA4 LINE L1 -554 5614 5548 1 1583 341 236 62 64 chr5 130831183 130831329 -21705930 - B3A SINE B2 -3 213 49 1 1583 269 196 0 19 chr5 130831724 130831776 -21705483 - B4A SINE B4 -5 287 237 1 1583 682 113 6 44 chr5 130831786 130831944 -21705315 + C-rich Low_complexity Low_complexity 2 153 0 1 1583 911 239 10 24 chr5 130831954 130832160 -21705099 - B4 SINE B4 -87 205 3 1 1583 311 378 17 8 chr5 130832198 130832318 -21704941 - MIRb SINE MIR -80 188 68 1 1583 1207 48 7 0 chr5 130832364 130832511 -21704748 - B1_Mus1 SINE Alu 0 148 1 1 1583 433 203 50 20 chr5 130832594 130832706 -21704553 - PB1D7 SINE Alu -21 128 21 1 1583 596 224 99 25 chr5 130832758 130832801 -21704458 - B3 SINE B2 0 216 162 1 1583 408 40 0 0 chr5 130832801 130832851 -21704408 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1583 596 224 99 25 chr5 130832851 130833008 -21704251 - B3 SINE B2 -55 161 1 1 1583 209 33 0 32 chr5 130833233 130833264 -21703995 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1 1583 408 240 30 40 chr5 130833272 130833372 -21703887 - PB1D10 SINE Alu -6 111 13 1 1583 1123 221 23 0 chr5 130833452 130833669 -21703590 + MTEb LTR MaLR 1 222 -157 1 1583 623 244 61 217 chr5 130833698 130833765 -21703494 - B4 SINE B4 -1 291 224 1 1583 437 0 19 0 chr5 130833765 130833818 -21703441 + (TATG)n Simple_repeat Simple_repeat 2 55 0 1 1583 623 244 61 217 chr5 130833818 130833994 -21703265 - B4 SINE B4 -69 223 74 1 1583 457 278 128 27 chr5 130833994 130834142 -21703117 - RSINE1 SINE B4 0 165 3 1 1583 623 244 61 217 chr5 130834142 130834242 -21703017 - B4 SINE B4 -219 73 1 1 1583 597 269 0 52 chr5 130834571 130834724 -21702535 - ID_B1 SINE B4 0 224 80 1 1583 1223 61 0 0 chr5 130834735 130834883 -21702376 - B1_Mus1 SINE Alu 0 148 1 1 1583 637 198 111 58 chr5 130834934 130835106 -21702153 - B3A SINE B2 -17 181 1 1 1583 398 271 50 8 chr5 130835214 130835333 -21701926 - ORR1E LTR MaLR 0 359 236 1 1583 413 285 59 29 chr5 130835847 130836017 -21701242 - RLTR42-int LTR ERVK -4117 1405 1231 1 1583 234 378 37 37 chr5 130836138 130836300 -21700959 - ORR1E LTR MaLR -125 234 73 1 1583 754 306 12 97 chr5 130836302 130836559 -21700700 + B4 SINE B4 58 292 0 1 1583 447 106 0 0 chr5 130836567 130836633 -21700626 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1583 258 32 0 0 chr5 130836792 130836823 -21700436 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1583 541 341 110 45 chr5 130836830 130837094 -21700165 - B4 SINE B4 -11 281 1 1 1583 2630 154 53 37 chr5 130837188 130837648 -21699611 + RLTR20B1 LTR ERVK 1 456 -107 1 1583 456 19 0 0 chr5 130837648 130837701 -21699558 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1583 2630 154 53 37 chr5 130837701 130837732 -21699527 + RLTR20B1 LTR ERVK 457 498 -65 1 1583 447 272 71 61 chr5 130837838 130838034 -21699225 - B3A SINE B2 0 198 1 1 1583 371 201 67 76 chr5 130838036 130838186 -21699073 + L1M4 LINE L1 4111 4214 -1932 1 1583 247 316 0 50 chr5 130838183 130838303 -21698956 - L1MC LINE L1 -1234 4912 4799 1 1583 413 271 68 0 chr5 130838370 130838488 -21698771 + ID_B1 SINE B4 83 208 -16 1 1583 315 0 0 0 chr5 130838627 130838662 -21698597 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1583 2166 205 88 22 chr5 130838691 130839181 -21698078 - RLTR11A LTR ERVK -5 523 2 1 1583 343 218 34 68 chr5 130839192 130839310 -21697949 - PB1D10 SINE Alu -2 115 2 1 1583 200 220 0 57 chr5 130839382 130839402 -21697857 + (TG)n Simple_repeat Simple_repeat 2 20 0 1 1583 216 0 0 0 chr5 130839402 130839426 -21697833 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1583 1188 51 0 0 chr5 130839426 130839564 -21697695 - B1_Mus2 SINE Alu -9 138 1 1 1583 200 220 0 57 chr5 130839564 130839595 -21697664 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1583 573 280 12 19 chr5 130839600 130839760 -21697499 - RSINE1 SINE B4 -3 162 4 1 1583 1529 208 92 17 chr5 130839909 130840257 -21697002 + MTE2b LTR MaLR 6 379 0 1 1583 307 328 21 71 chr5 130840703 130840844 -21696415 + L1M4 LINE L1 5129 5262 -884 1 1583 539 250 75 0 chr5 130840846 130840966 -21696293 + ID_B1 SINE B4 84 212 -12 1 1583 429 20 0 0 chr5 130840966 130841016 -21696243 + (CAAAA)n Simple_repeat Simple_repeat 4 53 0 1 1583 749 249 65 0 chr5 130841091 130841260 -21695999 - B3A SINE B2 -18 180 1 1 1583 247 272 75 62 chr5 130841260 130841421 -21695838 + L1MD LINE L1 5269 5431 -928 1 1583 824 222 71 22 chr5 130841532 130841716 -21695543 + ID_B1 SINE B4 1 193 -31 1 1583 197 449 0 18 chr5 130841796 130841966 -21695293 + MIRb SINE MIR 60 226 -42 1 1583 301 292 30 30 chr5 130842329 130842428 -21694831 - MTEa LTR MaLR -280 99 1 1 1583 717 227 90 30 chr5 130842710 130842910 -21694349 - ID_B1 SINE B4 -8 216 5 1 1583 851 269 110 15 chr5 130843403 130843667 -21693592 - B4A SINE B4 -1 291 3 1 1583 401 231 83 0 chr5 130843676 130843784 -21693475 - PB1D10 SINE Alu 0 117 1 1 1583 568 231 69 37 chr5 130843800 130843975 -21693284 - B3A SINE B2 -9 207 35 1 1583 709 251 147 0 chr5 130843971 130844182 -21693077 - ORR1E LTR MaLR -103 256 15 1 1583 256 217 0 48 chr5 130844601 130844664 -21692595 + ZP3AR Satellite Satellite 17 76 -136 1 1583 339 319 7 92 chr5 130844668 130844709 -21692550 + B4 SINE B4 56 83 -209 1 1583 698 201 0 37 chr5 130844709 130844838 -21692421 + B1_Mur4 SINE Alu 1 124 -26 1 1583 591 53 0 0 chr5 130844838 130844913 -21692346 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 1 1583 648 238 0 52 chr5 130844913 130844938 -21692321 + B1_Mus2 SINE Alu 122 146 -1 1 1583 266 299 90 13 chr5 130845641 130845797 -21691462 + L2c LINE L2 3092 3259 -128 1 1583 319 54 71 0 chr5 130846004 130846060 -21691199 + (TCTCTG)n Simple_repeat Simple_repeat 1 60 0 1 1583 274 308 0 0 chr5 130846215 130846293 -21690966 + Lx8 LINE L1 7077 7154 -319 1 1583 958 116 116 6 chr5 130846295 130846441 -21690818 - MTD LTR MaLR -13 406 253 1 1583 342 0 0 0 chr5 130846441 130846479 -21690780 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1583 958 226 448 56 chr5 130846479 130846624 -21690635 - MTD LTR MaLR -167 252 44 1 1583 324 333 39 8 chr5 130846848 130846975 -21690284 + RMER15 LTR ERVL 402 532 -43 1 1583 321 255 89 118 chr5 130847134 130847303 -21689956 - RSINE1 SINE B4 0 165 2 1 1583 928 284 4 18 chr5 130847333 130847559 -21689700 - B4 SINE B4 -69 223 1 1 1583 447 19 0 0 chr5 130848051 130848103 -21689156 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1583 1106 269 15 29 chr5 130848103 130848375 -21688884 - B4 SINE B4 -23 269 2 1 1583 229 275 56 28 chr5 130848375 130848441 -21688818 - MTEa LTR MaLR -39 340 273 1 1583 1020 246 194 16 chr5 130848657 130849008 -21688251 - MTD LTR MaLR -15 404 6 1 1583 585 306 148 25 chr5 130849358 130849636 -21687623 + ORR1E LTR MaLR 43 354 -5 1 1583 374 221 65 123 chr5 130849973 130850143 -21687116 + RMER15 LTR ERVL 325 484 -91 1 1583 441 0 0 0 chr5 130850414 130850463 -21686796 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1583 622 295 75 25 chr5 130850480 130850720 -21686539 - B4A SINE B4 -40 252 1 1 1583 1525 185 7 18 chr5 130850939 130851219 -21686040 - MTEb LTR MaLR -2 377 101 1 1583 328 271 84 66 chr5 130852049 130852215 -21685044 + RMER15 LTR ERVL 342 510 -65 1 1583 261 293 56 79 chr5 130852680 130852806 -21684453 + B1F2 SINE Alu 3 125 -24 1 1583 343 299 11 0 chr5 130852949 130853036 -21684223 - PB1D10 SINE Alu -27 90 3 1 1583 553 245 28 112 chr5 130853065 130853244 -21684015 + RSINE1 SINE B4 2 165 0 1 1583 213 39 0 0 chr5 130853274 130853300 -21683959 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1583 975 111 14 20 chr5 130854366 130854513 -21682746 - B1_Mm SINE Alu 0 147 2 1 1583 288 0 0 0 chr5 130854545 130854577 -21682682 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1583 390 333 76 117 chr5 130854742 130855269 -21681990 - MLT2B3 LTR ERVL -41 526 20 1 1583 341 245 52 25 chr5 130855395 130855532 -21681727 + MLT1A1 LTR MaLR 306 450 -17 1 1583 486 0 0 0 chr5 130855737 130855791 -21681468 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1 1583 325 294 35 58 chr5 130855810 130855983 -21681276 - L1MC3 LINE L1 -1138 6647 6479 1 1583 417 39 0 0 chr5 130855991 130856042 -21681217 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1 1583 364 224 53 0 chr5 130856045 130856215 -21681044 + (TA)n Simple_repeat Simple_repeat 2 180 0 1 1583 825 107 0 0 chr5 130856240 130856362 -21680897 + (TCTG)n Simple_repeat Simple_repeat 3 124 0 1 1583 234 0 0 0 chr5 130856593 130856619 -21680640 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1583 376 211 47 19 chr5 130856923 130857029 -21680230 - LTR33A LTR ERVL -13 507 399 1 1583 617 233 103 78 chr5 130857243 130857485 -21679774 + B4A SINE B4 1 248 -44 1 1583 369 149 0 0 chr5 130857566 130857633 -21679626 + (TCCC)n Simple_repeat Simple_repeat 4 70 0 1 1583 986 210 5 0 chr5 130857633 130858043 -21679216 + CT-rich Low_complexity Low_complexity 1 412 0 1 1583 262 285 75 13 chr5 130858045 130858133 -21679126 - B1F1 SINE Alu -51 98 2 1 1583 229 244 71 82 chr5 130858916 130859001 -21678258 + B3 SINE B2 2 85 -131 1 1583 534 259 62 123 chr5 130859338 130859549 -21677710 + B3A SINE B2 1 198 0 1 1583 513 71 0 0 chr5 130859830 130859900 -21677359 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1583 200 322 0 0 chr5 130860015 130860074 -21677185 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1583 194 88 0 95 chr5 130860435 130860498 -21676761 + (CAG)n Simple_repeat Simple_repeat 3 59 0 1 1583 225 83 0 0 chr5 130861217 130861253 -21676006 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1583 1254 161 9 39 chr5 130862852 130863084 -21674175 + URR1B DNA MER1_type 1 225 0 1 1583 806 312 62 37 chr5 130863094 130863337 -21673922 - B4 SINE B4 0 292 44 1 1583 631 318 47 5 chr5 130863315 130863505 -21673754 - ID_B1 SINE B4 -25 199 2 1 1583 385 235 131 10 chr5 130863519 130863618 -21673641 - PB1D7 SINE Alu -1 119 9 1 1583 238 325 14 65 chr5 130863907 130864045 -21673214 + L2b LINE L2 3245 3375 0 1 1583 197 293 17 17 chr5 130864680 130864739 -21672520 - L2c LINE L2 -224 3163 3105 1 1583 203 161 18 0 chr5 130864968 130865024 -21672235 + CT-rich Low_complexity Low_complexity 2 58 0 1 1583 1098 229 9 0 chr5 130865062 130865276 -21671983 + ID_B1 SINE B4 2 217 -7 1 1583 244 226 19 0 chr5 130865338 130865391 -21671868 - L2c LINE L2 -511 2908 2855 1 1583 323 265 71 0 chr5 130865706 130865804 -21671455 + RMER15 LTR ERVL 406 510 -65 1 1583 327 242 0 0 chr5 130865857 130865923 -21671336 - ID SINE ID -157 67 2 1 1583 666 239 14 28 chr5 130865954 130866096 -21671163 + RSINE1 SINE B4 11 150 -15 1 1583 398 327 51 0 chr5 130866087 130866243 -21671016 + RMER15 LTR ERVL 407 570 -5 1 1583 220 290 53 21 chr5 130866275 130866370 -21670889 - L2c LINE L2 -611 2808 2711 1 1583 612 271 54 57 chr5 130866370 130866718 -21670541 + MTD LTR MaLR 1 379 0 1 1583 1068 113 40 65 chr5 130866939 130867138 -21670121 - B2_Mm2 SINE B2 0 195 2 1 1583 701 277 116 5 chr5 130867258 130867465 -21669794 - B4 SINE B4 -60 232 3 1 1583 278 312 140 0 chr5 130867467 130867624 -21669635 - L2c LINE L2 -1067 2352 2174 1 1583 1897 107 2 177 chr5 130867853 130868249 -21669010 - ORR1A4 LTR MaLR -2 327 1 1 1583 1032 174 99 0 chr5 130868631 130868832 -21668427 - URR1B DNA MER1_type 0 225 5 1 1583 331 210 0 0 chr5 130868998 130869060 -21668199 + B3A SINE B2 2 63 -135 1 1583 1247 135 87 0 chr5 130869179 130869386 -21667873 + URR1A DNA MER1_type 2 226 0 1 1583 686 223 72 56 chr5 130869554 130869574 -21667685 - B3A SINE B2 0 198 182 1 1583 288 111 0 0 chr5 130869574 130869619 -21667640 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1583 686 223 72 56 chr5 130869619 130869793 -21667466 - B3A SINE B2 -17 181 1 1 1583 182 244 44 0 chr5 130869930 130869975 -21667284 - L2c LINE L2 -2921 498 452 1 1583 564 278 38 19 chr5 130871032 130871190 -21666069 - RSINE1 SINE B4 -3 162 2 1 1583 1190 85 11 0 chr5 130871477 130871653 -21665606 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1583 240 35 0 0 chr5 130871657 130871686 -21665573 + (AGGGGG)n Simple_repeat Simple_repeat 4 32 0 1 1583 269 208 220 15 chr5 130872176 130872308 -21664951 - L1MA4 LINE L1 -366 5934 5776 1 1583 300 186 53 0 chr5 130872308 130872421 -21664838 + (TA)n Simple_repeat Simple_repeat 1 119 0 1 1583 415 277 0 0 chr5 130872421 130872540 -21664719 - L1MA4 LINE L1 -510 5793 5675 1 1583 734 242 6 19 chr5 130872551 130872711 -21664548 - RSINE1 SINE B4 -5 160 3 1 1583 405 0 0 0 chr5 130872787 130872832 -21664427 + (TA)n Simple_repeat Simple_repeat 1 45 0 1 1583 374 319 0 66 chr5 130873307 130873319 -21663940 - ID_B1 SINE B4 0 224 213 1 1583 549 15 0 0 chr5 130873319 130873387 -21663872 - L1Md_T LINE L1 0 6582 6515 1 1583 374 319 0 66 chr5 130873387 130873525 -21663734 - ID_B1 SINE B4 -12 212 85 1 1583 464 296 23 39 chr5 130873396 130873526 -21663733 - B1F SINE Alu -20 129 2 1 1583 189 0 0 0 chr5 130873537 130873558 -21663701 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1 1583 494 241 169 47 chr5 130873560 130873708 -21663551 - ID_B1 SINE B4 -4 220 55 1 1583 583 211 156 6 chr5 130873888 130874055 -21663204 - B4A SINE B4 -98 194 3 1 1583 373 225 25 12 chr5 130874121 130874202 -21663057 - ID4 SINE ID 0 83 2 1 1583 1415 230 80 25 chr5 130874242 130874567 -21662692 - MTE2b LTR MaLR -36 343 1 1 1583 273 280 78 88 chr5 130874567 130874665 -21662594 - PB1D10 SINE Alu -20 97 1 1 1583 571 344 52 4 chr5 130875422 130875673 -21661586 - RMER5 LTR ERV1 -19 515 253 1 1583 756 214 21 0 chr5 130876206 130876346 -21660913 + B1_Mur1 SINE Alu 1 143 -6 1 1583 242 380 39 39 chr5 130876470 130876648 -21660611 - L4 LINE RTE -652 1377 1200 1 1583 885 232 14 14 chr5 130876823 130877033 -21660226 + ID_B1 SINE B4 2 211 -13 1 1583 198 0 0 0 chr5 130877033 130877055 -21660204 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 1 1583 29 28 0 0 chr5 130877073 130877109 -21660150 + AT_rich Low_complexity Low_complexity 1 36 0 1 1583 324 0 0 0 chr5 130877121 130877157 -21660102 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1583 559 259 75 9 chr5 130877157 130877311 -21659948 - RSINE1 SINE B4 -14 278 3 1 1583 664 107 9 9 chr5 130877311 130877424 -21659835 + (TCCC)n Simple_repeat Simple_repeat 4 116 0 1 1583 826 181 45 24 chr5 130877892 130878087 -21659172 + B3A SINE B2 22 216 0 1 1583 234 0 0 0 chr5 130878333 130878359 -21658900 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1583 306 225 125 0 chr5 130878422 130878489 -21658770 + B4A SINE B4 1 76 -216 1 1583 1044 49 33 72 chr5 130878489 130878642 -21658617 + B1_Mus1 SINE Alu 2 148 0 1 1583 306 225 125 0 chr5 130878642 130878654 -21658605 + B4A SINE B4 77 89 -203 1 1583 380 341 8 15 chr5 130878674 130878808 -21658451 + B4A SINE B4 64 196 -96 1 1583 1077 118 68 69 chr5 130879156 130879377 -21657882 - LTRIS5 LTR ERV1 0 512 228 1 1583 401 119 60 0 chr5 130879407 130879474 -21657785 - LTRIS5 LTR ERV1 -376 71 1 1 1583 873 185 0 13 chr5 130879606 130879759 -21657500 + RSINE1 SINE B4 3 153 -12 1 1583 261 272 120 74 chr5 130880053 130880080 -21657179 - B2_Mm1a SINE B2 -10 183 149 1 1583 357 24 0 0 chr5 130880080 130880122 -21657137 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1583 542 258 80 10 chr5 130880122 130880269 -21656990 - B3A SINE B2 -47 151 1 1 1583 348 24 0 0 chr5 130881416 130881457 -21655802 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1583 35 63 0 0 chr5 130881576 130881639 -21655620 + AT_rich Low_complexity Low_complexity 1 63 0 1 1583 797 233 7 0 chr5 130881653 130881799 -21655460 - RSINE1 SINE B4 -17 148 2 1 1583 341 200 34 47 chr5 130881832 130881921 -21655338 - Lx8 LINE L1 -361 7112 7013 1 1583 636 227 19 45 chr5 130881921 130882078 -21655181 + RSINE1 SINE B4 13 165 0 1 1583 305 310 27 34 chr5 130883025 130883172 -21654087 + GA-rich Low_complexity Low_complexity 5 150 0 1 1583 589 102 19 0 chr5 130883537 130883645 -21653614 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 1 1583 268 236 58 41 chr5 130883662 130883787 -21653472 + (TCTA)n Simple_repeat Simple_repeat 3 130 0 1 1583 279 54 0 0 chr5 130883787 130883824 -21653435 + (CAAT)n Simple_repeat Simple_repeat 3 39 0 1 1583 268 236 58 41 chr5 130883824 130883870 -21653389 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1 1583 560 116 11 0 chr5 130883979 130884074 -21653185 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1 1583 622 255 22 7 chr5 130884076 130884214 -21653045 - ID_B1 SINE B4 -6 218 79 1 1583 745 250 55 40 chr5 130884555 130884754 -21652505 + B4A SINE B4 31 232 -60 1 1583 440 197 0 73 chr5 130884754 130884836 -21652423 + RSINE1 SINE B4 3 78 -87 1 1583 414 57 0 0 chr5 130884980 130885033 -21652226 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1583 741 93 0 0 chr5 130885570 130885677 -21651582 + (TCTG)n Simple_repeat Simple_repeat 2 108 0 1 1583 1445 231 6 48 chr5 130885678 130886010 -21651249 + ORR1E LTR MaLR 1 318 -41 1 1583 881 133 34 20 chr5 130886153 130886299 -21650960 - B1_Mur2 SINE Alu 0 149 2 1 1583 405 0 0 0 chr5 130886358 130886403 -21650856 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1583 353 324 40 40 chr5 130886406 130886554 -21650705 - RSINE1 SINE B4 -14 151 4 1 1583 550 219 0 10 chr5 130886557 130886654 -21650605 - B4 SINE B4 -67 225 130 1 1583 399 254 7 176 chr5 130886687 130886744 -21650515 - B4 SINE B4 -162 130 85 1 1583 874 214 23 37 chr5 130886744 130886962 -21650297 - B3 SINE B2 0 216 2 1 1583 399 254 7 176 chr5 130886962 130887057 -21650202 - B4 SINE B4 -208 84 4 1 1583 300 53 0 0 chr5 130887920 130887958 -21649301 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1583 584 248 255 22 chr5 130888053 130888284 -21648975 - RMER15 LTR ERVL -43 532 248 1 1583 809 311 84 87 chr5 130888320 130888376 -21648883 - MTE2a LTR MaLR -8 371 319 1 1583 2651 71 3 0 chr5 130888376 130888702 -21648557 + ORR1A2 LTR MaLR 1 327 0 1 1583 809 311 84 87 chr5 130888702 130889012 -21648247 - MTE2a LTR MaLR -61 318 6 1 1583 467 208 40 32 chr5 130889012 130889136 -21648123 - RMER15 LTR ERVL -450 125 1 1 1583 351 320 16 31 chr5 130889139 130889268 -21647991 + MLT1A1 LTR MaLR 1 127 -281 1 1583 388 285 24 123 chr5 130889266 130889566 -21647693 + ORR1E LTR MaLR 37 306 -53 1 1583 225 0 0 0 chr5 130889629 130889654 -21647605 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1583 483 227 176 29 chr5 130889839 130889975 -21647284 - RSINE1 SINE B4 0 165 10 1 1583 254 254 70 0 chr5 130889997 130890068 -21647191 - B1_Mur2 SINE Alu -9 140 65 1 1583 356 284 0 40 chr5 130890038 130890137 -21647122 - B1F SINE Alu -26 123 29 1 1583 244 254 16 0 chr5 130890194 130890257 -21647002 - ID4 SINE ID -16 67 4 1 1583 190 81 0 51 chr5 130890951 130890990 -21646269 + (TGGGGG)n Simple_repeat Simple_repeat 6 42 0 1 1583 339 25 0 0 chr5 130891250 130891290 -21645969 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1583 1315 200 25 13 chr5 130891355 130891711 -21645548 - ZP3AR Satellite Satellite -4 360 1 1 1583 186 43 0 0 chr5 130891767 130891790 -21645469 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1 1583 7873 89 14 6 chr5 130891792 130893430 -21643829 - L1_Mus4 LINE L1 -12 6624 4976 1 1583 407 281 66 8 chr5 130893431 130893553 -21643706 - B1F SINE Alu -20 129 1 1 1583 648 120 0 0 chr5 130893592 130893692 -21643567 + (TC)n Simple_repeat Simple_repeat 2 101 0 1 1583 437 215 16 35 chr5 130893834 130894151 -21643108 + CT-rich Low_complexity Low_complexity 1 310 0 1 1583 683 336 76 11 chr5 130894820 130895082 -21642177 - MTEa LTR MaLR -4 375 97 1 1583 327 310 0 0 chr5 130895122 130895209 -21642050 - PB1D10 SINE Alu -26 91 5 1 1583 1088 221 97 91 chr5 130895377 130895750 -21641509 - MTE2a LTR MaLR -2 377 3 1 1583 306 0 0 0 chr5 130895805 130895839 -21641420 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1583 288 0 0 0 chr5 130896685 130896717 -21640542 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1583 1190 227 9 18 chr5 130896737 130896966 -21640293 - B4 SINE B4 -59 233 7 1 1583 963 137 0 0 chr5 130896984 130897145 -21640114 + (TG)n Simple_repeat Simple_repeat 2 162 0 1 1583 446 234 0 93 chr5 130897154 130897272 -21639987 - ID_B1 SINE B4 -1 223 117 1 1583 330 337 2 0 chr5 130897312 130897399 -21639860 - MTE2a LTR MaLR -229 150 63 1 1583 289 314 128 0 chr5 130897389 130897491 -21639768 - MTEa LTR MaLR -264 115 1 1 1583 196 179 26 0 chr5 130897605 130897644 -21639615 + L3 LINE CR1 2017 2056 -2433 1 1583 553 345 25 65 chr5 130897762 130898038 -21639221 - B4A SINE B4 0 292 28 1 1583 1986 149 32 76 chr5 130898080 130898450 -21638809 + ORR1B1 LTR MaLR 41 394 0 1 1583 737 258 82 26 chr5 130898654 130898849 -21638410 + B4 SINE B4 1 206 -86 1 1583 759 222 0 0 chr5 130898890 130899016 -21638243 + RSINE1 SINE B4 4 129 -36 1 1583 312 27 0 0 chr5 130899031 130899068 -21638191 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1583 777 172 0 0 chr5 130899240 130899420 -21637839 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1583 647 253 45 70 chr5 130899801 130900001 -21637258 - B3A SINE B2 0 198 4 1 1583 496 251 69 79 chr5 130900029 130900232 -21637027 - Lx8 LINE L1 -5 7468 7268 1 1583 481 261 42 14 chr5 130900230 130900374 -21636885 - Lx8 LINE L1 -321 7152 7005 1 1583 474 18 0 0 chr5 130900722 130900777 -21636482 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1583 686 203 7 15 chr5 130900886 130901021 -21636238 + ID_B1 SINE B4 91 224 0 1 1583 460 337 84 44 chr5 130901077 130901375 -21635884 - Charlie4a DNA MER1_type -7 501 192 1 1583 281 363 8 0 chr5 130901410 130901534 -21635725 + CT-rich Low_complexity Low_complexity 3 127 0 1 1583 219 69 0 0 chr5 130901534 130901563 -21635696 + (TCTCC)n Simple_repeat Simple_repeat 3 31 0 1 1583 267 288 104 89 chr5 130901827 130901850 -21635409 + YREP_Mm Unknown Unknown 153 207 -1605 1 1583 623 183 150 0 chr5 130901850 130901970 -21635289 - ID_B1 SINE B4 -5 219 82 1 1583 267 288 104 89 chr5 130901970 130902029 -21635230 + YREP_Mm Unknown Unknown 208 357 -1455 1 1583 216 0 0 0 chr5 130902214 130902238 -21635021 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1 1583 987 264 8 40 chr5 130902312 130902561 -21634698 - B4 SINE B4 -51 241 1 1 1583 1062 319 77 39 chr5 130902563 130903151 -21634108 - L1MC3 LINE L1 -1023 6762 6153 1 1583 494 178 178 0 chr5 130903162 130903263 -21633996 - ID_B1 SINE B4 -20 204 86 1 1583 2482 139 33 93 chr5 130903282 130903767 -21633492 + RMER6B LTR ERVK 6 461 0 1 1583 424 251 132 47 chr5 130903835 130904048 -21633211 - L1MC3 LINE L1 -234 6110 5880 1 1583 1451 79 5 0 chr5 130904053 130904243 -21633016 - B2_Mm1a SINE B2 -1 192 2 1 1583 471 264 213 0 chr5 130904245 130904400 -21632859 - B3A SINE B2 -6 192 5 1 1583 213 65 0 0 chr5 130904476 130904507 -21632752 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1583 290 311 36 64 chr5 130904571 130904654 -21632605 - B4A SINE B4 0 292 212 1 1583 3430 35 5 0 chr5 130904654 130905048 -21632211 + MTA_Mm LTR MaLR 1 396 0 1 1583 527 261 233 24 chr5 130905048 130905064 -21632195 - B4A SINE B4 -81 211 179 1 1583 264 243 26 26 chr5 130905064 130905140 -21632119 - PB1 SINE Alu -51 76 1 1 1583 527 261 233 24 chr5 130905140 130905221 -21632038 - B4A SINE B4 -81 178 2 1 1583 242 186 0 0 chr5 130905473 130905516 -21631743 - B4 SINE B4 -214 78 36 1 1583 875 215 20 64 chr5 130905787 130905991 -21631268 - B3A SINE B2 -3 195 1 1 1583 886 241 103 25 chr5 130906066 130906233 -21631026 + MTEa LTR MaLR 1 173 -206 1 1583 1542 152 182 56 chr5 130906233 130906421 -21630838 + ORR1C2 LTR MaLR 1 171 -213 1 1583 327 25 0 0 chr5 130906421 130906461 -21630798 + (CAGT)n Simple_repeat Simple_repeat 2 41 0 1 1583 294 98 0 0 chr5 130906461 130906512 -21630747 + (TATG)n Simple_repeat Simple_repeat 4 54 0 1 1583 1542 152 182 56 chr5 130906512 130906663 -21630596 + ORR1C2 LTR MaLR 172 382 -2 1 1583 886 241 103 25 chr5 130906663 130906737 -21630522 + MTEa LTR MaLR 174 261 -118 1 1583 586 240 0 32 chr5 130906741 130906866 -21630393 + B3 SINE B2 84 204 -12 1 1583 29 28 0 0 chr5 130906927 130906963 -21630296 + AT_rich Low_complexity Low_complexity 1 36 0 1 1583 660 206 73 0 chr5 130906963 130907099 -21630160 + MTEa LTR MaLR 8 153 -226 1 1583 239 201 11 0 chr5 130907338 130907394 -21629865 - MTEb LTR MaLR -2 377 316 1 1583 604 253 80 0 chr5 130907447 130907597 -21629662 - RSINE1 SINE B4 -2 163 2 1 1583 314 138 0 17 chr5 130907908 130907967 -21629292 + G-rich Low_complexity Low_complexity 5 62 0 1 1583 368 212 138 0 chr5 130908119 130908199 -21629060 + ID_B1 SINE B4 122 212 -12 1 1583 519 262 131 28 chr5 130908389 130908534 -21628725 + ID_B1 SINE B4 1 160 -64 1 1583 572 219 6 0 chr5 130908541 130908710 -21628549 + (TG)n Simple_repeat Simple_repeat 2 171 0 1 1583 345 187 0 0 chr5 130908725 130908800 -21628459 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1583 476 210 287 12 chr5 130909132 130909296 -21627963 - B3 SINE B2 -5 211 3 1 1583 2123 161 77 0 chr5 130909372 130909738 -21627521 + ORR1B1 LTR MaLR 1 394 0 1 1583 1014 226 27 9 chr5 130909865 130910084 -21627175 - Lx8 LINE L1 -237 7236 7014 1 1583 267 183 115 16 chr5 130910054 130910115 -21627144 - Lx6 LINE L1 -586 6874 6808 1 1583 1360 192 14 78 chr5 130910127 130910409 -21626850 + ORR1C2 LTR MaLR 9 272 -112 1 1583 577 274 0 18 chr5 130910570 130910741 -21626518 - L1M5 LINE L1 -389 5784 5617 1 1583 1487 238 43 91 chr5 130911189 130911587 -21625672 - MTE2b LTR MaLR 0 379 1 1 1583 1023 156 0 0 chr5 130911678 130911857 -21625402 + CT-rich Low_complexity Low_complexity 2 180 0 1 1583 768 52 0 0 chr5 130911859 130911956 -21625303 + (TTCTC)n Simple_repeat Simple_repeat 4 100 0 1 1583 1252 48 0 0 chr5 130912488 130912634 -21624625 + B1_Mus2 SINE Alu 2 147 0 1 1583 204 122 0 0 chr5 130912634 130912675 -21624584 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1583 356 301 29 19 chr5 130912725 130912830 -21624429 - MER21B LTR ERV1 -276 587 482 1 1583 930 288 9 113 chr5 130912830 130913253 -21624006 + MTE2a LTR MaLR 1 379 0 1 1583 573 279 46 82 chr5 130913477 130913696 -21623563 - MTEb LTR MaLR 0 379 169 1 1583 252 0 0 0 chr5 130913720 130913748 -21623511 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1583 382 246 98 62 chr5 130913750 130913916 -21623343 - B3A SINE B2 -28 188 3 1 1583 892 300 60 28 chr5 130914173 130914207 -21623052 - Tigger5 DNA MER2_type 0 2406 2373 1 1583 869 250 100 128 chr5 130914207 130914597 -21622662 - MTE2a LTR MaLR 0 379 1 1 1583 892 300 60 28 chr5 130914597 130914881 -21622378 - Tigger5 DNA MER2_type -34 2372 2079 1 1583 24 0 0 0 chr5 130915137 130915161 -21622098 + AT_rich Low_complexity Low_complexity 1 24 0 1 1583 390 42 0 0 chr5 130915162 130915210 -21622049 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1583 475 271 107 0 chr5 130915219 130915341 -21621918 - RSINE1 SINE B4 -29 136 2 1 1583 283 226 20 0 chr5 130915431 130915533 -21621726 + (CTAA)n Simple_repeat Simple_repeat 2 105 0 1 1583 612 196 35 42 chr5 130915557 130915701 -21621558 - B1F SINE Alu 0 149 7 1 1583 473 236 0 31 chr5 130916030 130916152 -21621107 - B1F1 SINE Alu 0 120 3 1 1583 242 247 0 165 chr5 130916065 130916162 -21621097 - MT2B2 LTR ERVL -343 241 161 1 1583 900 236 79 34 chr5 130916391 130916658 -21620601 - B4A SINE B4 -13 279 1 1 1583 1084 224 9 5 chr5 130916689 130916909 -21620350 - ID_B1 SINE B4 -2 222 2 1 1583 264 247 21 53 chr5 130917015 130917109 -21620150 + MTEa LTR MaLR 289 379 0 1 1583 22 0 0 0 chr5 130917120 130917142 -21620117 + AT_rich Low_complexity Low_complexity 1 22 0 1 1583 683 241 64 12 chr5 130917262 130917434 -21619825 - B3A SINE B2 -16 182 2 1 1583 531 82 0 0 chr5 130917525 130917598 -21619661 + (TC)n Simple_repeat Simple_repeat 1 73 0 1 1583 21 36 0 0 chr5 130917884 130917912 -21619347 + AT_rich Low_complexity Low_complexity 1 28 0 1 1583 509 254 72 72 chr5 130917912 130917947 -21619312 - RSINE1 SINE B4 0 165 125 1 1583 261 0 0 0 chr5 130917947 130917976 -21619283 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1583 509 254 72 72 chr5 130917976 130918093 -21619166 - RSINE1 SINE B4 -41 124 13 1 1583 374 293 226 27 chr5 130918135 130918321 -21618938 + B4A SINE B4 1 223 -69 1 1583 567 0 0 0 chr5 130918321 130918384 -21618875 + (GA)n Simple_repeat Simple_repeat 2 64 0 1 1583 423 68 0 0 chr5 130918462 130918521 -21618738 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1583 358 244 23 11 chr5 130918757 130918844 -21618415 + ID_B1 SINE B4 91 178 -46 1 1583 515 144 10 0 chr5 130918846 130918943 -21618316 + CT-rich Low_complexity Low_complexity 2 99 0 1 1583 397 322 8 34 chr5 130918961 130919080 -21618179 - PB1D10 SINE Alu 0 117 2 1 1583 445 168 37 0 chr5 130919262 130919317 -21617942 + polypurine Low_complexity Low_complexity 5 59 0 1 1583 369 0 0 0 chr5 130919317 130919358 -21617901 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1 1583 445 168 37 0 chr5 130919358 130919409 -21617850 + polypurine Low_complexity Low_complexity 60 114 0 1 1583 447 264 179 16 chr5 130919420 130919543 -21617716 + RSINE1 SINE B4 14 156 -9 1 1583 650 164 203 1 chr5 130919552 130919677 -21617582 + B3A SINE B2 1 153 -40 1 1583 264 100 0 0 chr5 130919677 130919717 -21617542 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1583 433 224 190 13 chr5 130919717 130919749 -21617510 + B2_Mm1t SINE B2 154 186 -7 1 1583 565 243 152 39 chr5 130919796 130920053 -21617206 - B4A SINE B4 -2 290 5 1 1583 471 35 0 0 chr5 130920085 130920142 -21617117 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 1583 350 247 48 131 chr5 130920219 130920311 -21616948 - RMER10A LTR ERVL -28 414 321 1 1583 576 0 0 0 chr5 130920311 130920375 -21616884 + (GA)n Simple_repeat Simple_repeat 1 64 0 1 1583 350 247 48 131 chr5 130920375 130920450 -21616809 - RMER10A LTR ERVL -122 320 261 1 1583 588 312 0 48 chr5 130920560 130920725 -21616534 - RSINE1 SINE B4 -6 159 3 1 1583 351 250 15 0 chr5 130921167 130921235 -21616024 - ID4 SINE ID -6 77 9 1 1583 295 311 78 0 chr5 130921200 130921290 -21615969 - ZP3AR Satellite Satellite -74 138 42 1 1583 249 146 0 0 chr5 130921303 130921351 -21615908 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1583 589 167 135 0 chr5 130921837 130921963 -21615296 + URR1B DNA MER1_type 83 225 0 1 1583 347 349 59 24 chr5 130922401 130922571 -21614688 - MIR SINE MIR -73 189 14 1 1583 259 311 78 0 chr5 130922699 130922802 -21614457 + PB1D7 SINE Alu 1 111 -9 1 1583 621 297 79 44 chr5 130922826 130923055 -21614204 + B4 SINE B4 53 289 -3 1 1583 298 233 21 85 chr5 130923163 130923257 -21614002 - B1F2 SINE Alu -61 88 1 1 1583 237 139 0 0 chr5 130924531 130924574 -21612685 + (TGAG)n Simple_repeat Simple_repeat 4 46 0 1 1583 198 0 0 0 chr5 130924645 130924667 -21612592 + (TGGGGG)n Simple_repeat Simple_repeat 1 22 0 1 1583 375 23 0 0 chr5 130926622 130926666 -21610593 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1583 255 61 0 0 chr5 130926795 130926828 -21610431 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 1 1583 324 0 0 0 chr5 130926903 130926939 -21610320 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1583 696 187 28 41 chr5 130926940 130927085 -21610174 - B3A SINE B2 -55 143 1 1 1583 231 293 58 48 chr5 130927087 130927191 -21610068 - BC1_Mm scRNA scRNA -47 105 1 1 1583 367 247 82 0 chr5 130927597 130927694 -21609565 + PB1D10 SINE Alu 1 105 -12 1 1583 195 129 0 0 chr5 130927694 130927725 -21609534 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 1 1583 533 15 0 15 chr5 130927887 130927954 -21609305 + (TCCC)n Simple_repeat Simple_repeat 2 67 0 1 1583 519 17 0 0 chr5 130927956 130928016 -21609243 + (TTTC)n Simple_repeat Simple_repeat 4 63 0 1 1583 23 68 0 0 chr5 130928114 130928158 -21609101 + AT_rich Low_complexity Low_complexity 1 44 0 1 1583 561 268 176 39 chr5 130928170 130928426 -21608833 - B4A SINE B4 0 292 2 1 1583 541 312 0 7 chr5 130928527 130928672 -21608587 - ID_B1 SINE B4 0 224 81 1 1583 507 259 174 31 chr5 130928894 130929089 -21608170 - ID_B1 SINE B4 0 224 2 1 1583 306 265 40 0 chr5 130929102 130929253 -21608006 + CT-rich Low_complexity Low_complexity 2 158 0 1 1583 938 216 23 42 chr5 130929572 130929789 -21607470 + ID_B1 SINE B4 3 215 -9 1 1583 523 198 157 21 chr5 130930063 130930222 -21607037 - B3A SINE B2 -33 183 15 1 1583 357 264 102 47 chr5 130930236 130930363 -21606896 - RSINE1 SINE B4 0 165 32 1 1583 459 0 0 0 chr5 130930501 130930552 -21606707 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1583 222 42 41 41 chr5 130930622 130930645 -21606614 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1583 1285 34 0 0 chr5 130930645 130930792 -21606467 - B1_Mm SINE Alu 0 147 1 1 1583 222 42 41 41 chr5 130930792 130930817 -21606442 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1583 351 333 99 33 chr5 130930822 130931033 -21606226 - B4 SINE B4 -67 225 1 1 1583 301 323 21 0 chr5 130931179 130931275 -21605984 + CT-rich Low_complexity Low_complexity 4 101 0 1 1583 545 178 0 45 chr5 130931281 130931393 -21605866 - ID_B1 SINE B4 -27 197 91 1 1583 691 234 0 0 chr5 130931831 130931972 -21605287 + B1F1 SINE Alu 1 141 -8 1 1583 236 288 0 0 chr5 130932055 130932128 -21605131 - L2b LINE L2 -319 3056 2984 1 1583 533 88 12 0 chr5 130932283 130932363 -21604896 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1583 560 244 0 0 chr5 130932363 130932478 -21604781 - RSINE1 SINE B4 -41 124 10 1 1583 452 138 0 0 chr5 130932791 130932871 -21604388 - L1Md_F2 LINE L1 0 6582 6503 1 1583 551 79 118 0 chr5 130932871 130932947 -21604312 + L1_Mus1 LINE L1 6103 6187 -380 1 1583 453 204 20 0 chr5 130933078 130933230 -21604029 + (TG)n Simple_repeat Simple_repeat 2 156 0 1 1583 302 262 135 70 chr5 130933276 130933361 -21603898 - B4A SINE B4 -4 288 199 1 1583 1077 170 8 125 chr5 130933361 130933617 -21603642 + URR1A DNA MER1_type 1 226 0 1 1583 302 262 135 70 chr5 130933617 130933687 -21603572 - B4A SINE B4 -94 198 123 1 1583 495 234 0 0 chr5 130933695 130933819 -21603440 + (CA)n Simple_repeat Simple_repeat 1 124 0 1 1583 375 61 0 0 chr5 130933825 130933874 -21603385 + HAL1-3A_ME LINE L1 1975 2023 -835 1 1583 291 264 27 14 chr5 130933900 130933973 -21603286 - B4A SINE B4 -195 97 24 1 1583 438 259 25 41 chr5 130933983 130934104 -21603155 - PB1D7 SINE Alu -1 119 1 1 1583 354 321 132 39 chr5 130934286 130934450 -21602809 + L1ME4a LINE L1 5897 6070 -54 1 1583 882 204 101 15 chr5 130934450 130934649 -21602610 + B3 SINE B2 1 216 0 1 1583 354 321 132 39 chr5 130934649 130934688 -21602571 + L1ME4a LINE L1 6071 6118 -6 1 1583 370 257 29 38 chr5 130934719 130934824 -21602435 - PB1D10 SINE Alu -12 105 2 1 1583 222 118 0 0 chr5 130934855 130934889 -21602370 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1583 727 290 107 16 chr5 130934945 130935197 -21602062 - B4A SINE B4 -16 276 2 1 1583 960 263 56 4 chr5 130935327 130935560 -21601699 + B4 SINE B4 4 248 -44 1 1583 1029 50 0 0 chr5 130935586 130935726 -21601533 + (CA)n Simple_repeat Simple_repeat 2 141 0 1 1583 418 283 9 0 chr5 130935727 130935833 -21601426 - PB1D10 SINE Alu -5 112 6 1 1583 381 230 132 54 chr5 130935883 130936012 -21601247 - ID_B1 SINE B4 -2 222 84 1 1583 396 0 0 0 chr5 130936208 130936252 -21601007 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1583 991 167 50 61 chr5 130936274 130936472 -21600787 + B3A SINE B2 1 196 -2 1 1583 1100 257 40 117 chr5 130937047 130937501 -21599758 + MTD LTR MaLR 1 419 0 1 1583 1043 290 104 0 chr5 130937920 130937983 -21599276 + MTD LTR MaLR 50 116 -303 1 1583 195 42 0 0 chr5 130937983 130938007 -21599252 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1583 914 272 5 0 chr5 130938008 130938221 -21599038 - B3 SINE B2 -2 214 1 1 1583 1043 290 104 0 chr5 130938221 130938490 -21598769 + MTD LTR MaLR 117 416 -3 1 1583 900 205 19 49 chr5 130938533 130938854 -21598405 - MTEb LTR MaLR -12 367 2 1 1583 357 149 0 0 chr5 130938890 130938957 -21598302 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1583 278 340 114 24 chr5 130939028 130939194 -21598065 - B4A SINE B4 -106 186 6 1 1583 248 254 86 43 chr5 130939784 130939854 -21597405 + PB1D10 SINE Alu 45 117 0 1 1583 1595 74 4 8 chr5 130939870 130940257 -21597002 + ZP3AR Satellite Satellite 1 385 0 1 1583 231 61 0 0 chr5 130940319 130940352 -21596907 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 197 589 276 85 5 chr5 130940912 130941112 -21596147 - ID_B1 SINE B4 -8 216 1 1 1584 750 257 20 65 chr5 130941414 130941614 -21595645 - B4 SINE B4 -99 193 3 1 1584 183 156 0 0 chr5 130941830 130941862 -21595397 + T-rich Low_complexity Low_complexity 1 32 0 1 1584 2363 96 16 0 chr5 130942200 130942522 -21594737 - ORR1A2 LTR MaLR 0 327 1 1 1584 720 257 10 56 chr5 130942945 130943143 -21594116 - B3A SINE B2 0 198 10 1 1584 635 225 0 30 chr5 130943198 130943331 -21593928 - B1_Mur1 SINE Alu -18 131 3 1 1584 328 289 11 0 chr5 130943514 130943604 -21593655 - MIR SINE MIR -46 216 126 1 1584 447 290 34 80 chr5 130943631 130943807 -21593452 - Tigger7 DNA MER2_type -3 2488 2321 1 1584 362 250 0 0 chr5 130943849 130943921 -21593338 - ID2 SINE ID 0 83 12 1 1584 323 240 164 8 chr5 130943958 130944080 -21593179 - B1F SINE Alu -8 141 1 1 1584 948 313 33 6 chr5 130944096 130944427 -21592832 - Tigger7 DNA MER2_type -1929 562 223 1 1584 620 248 7 0 chr5 130944423 130944568 -21592691 - ORR1D2-int LTR MaLR -1224 146 1 1 1584 473 190 89 173 chr5 130944568 130944759 -21592500 - ORR1D2 LTR MaLR 0 370 196 1 1584 255 304 12 0 chr5 130945432 130945766 -21591493 + (TG)n Simple_repeat Simple_repeat 1 338 0 1 1584 239 309 88 0 chr5 130945840 130945908 -21591351 - B4 SINE B4 -5 287 214 1 1584 243 0 0 0 chr5 130945923 130945950 -21591309 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1 1584 915 225 202 25 chr5 130946070 130946154 -21591105 + B4A SINE B4 1 169 -123 1 1584 302 245 19 67 chr5 130946154 130946259 -21591000 + B1F2 SINE Alu 1 100 -49 1 1584 915 225 202 25 chr5 130946259 130946318 -21590941 + B4A SINE B4 170 292 0 1 1584 253 342 13 0 chr5 130946379 130946455 -21590804 - ID_B1 SINE B4 -65 159 83 1 1584 605 189 28 0 chr5 130946538 130946644 -21590615 + B1_Mur1 SINE Alu 22 130 -19 1 1584 258 32 0 0 chr5 130946733 130946764 -21590495 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1584 808 223 69 10 chr5 130947454 130947658 -21589601 - B3 SINE B2 0 216 1 1 1584 448 245 85 0 chr5 130947944 130948050 -21589209 - B1F1 SINE Alu -34 115 1 1 1584 270 256 0 0 chr5 130948778 130948856 -21588403 + T-rich Low_complexity Low_complexity 1 78 0 1 1584 608 275 0 7 chr5 130948856 130949006 -21588253 - B1F SINE Alu 0 149 1 1 1584 232 311 68 0 chr5 130949190 130949264 -21587995 - ZP3AR Satellite Satellite -88 124 46 1 1584 774 22 0 0 chr5 130949275 130949367 -21587892 + (TG)n Simple_repeat Simple_repeat 2 93 0 1 1584 2039 132 21 21 chr5 130949367 130949693 -21587566 - ORR1A4 LTR MaLR -3 326 1 1 1584 705 53 0 0 chr5 130949693 130949787 -21587472 + (TG)n Simple_repeat Simple_repeat 2 95 0 1 1584 804 254 114 8 chr5 130949817 130950063 -21587196 - B4 SINE B4 -18 274 3 1 1584 502 320 68 32 chr5 130950381 130950662 -21586597 - B4A SINE B4 -1 291 1 1 1584 963 249 49 67 chr5 130951225 130951509 -21585750 + B4A SINE B4 6 284 -8 1 1584 533 72 12 0 chr5 130951940 130952023 -21585236 + (GA)n Simple_repeat Simple_repeat 1 84 0 1 1584 823 219 73 0 chr5 130952359 130952551 -21584708 - ID_B1 SINE B4 -17 207 2 1 1584 495 0 0 0 chr5 130953279 130953334 -21583925 + (TTA)n Simple_repeat Simple_repeat 3 57 0 1 1584 746 212 55 92 chr5 130953444 130953662 -21583597 - B3 SINE B2 -5 211 2 1 1584 877 269 12 35 chr5 130953668 130953922 -21583337 - B4 SINE B4 -44 248 1 1 1584 293 158 48 16 chr5 130953929 130953991 -21583268 - PB1D10 SINE Alu -7 120 61 1 1584 385 311 48 48 chr5 130953988 130954238 -21583021 + MLT1A LTR MaLR 109 358 -16 1 1584 469 135 11 11 chr5 130954493 130954583 -21582676 + (TTA)n Simple_repeat Simple_repeat 1 90 0 1 1584 721 256 24 0 chr5 130954592 130954760 -21582499 - ID_B1 SINE B4 -29 195 24 1 1584 381 212 0 56 chr5 130954823 130954913 -21582346 + B1F2 SINE Alu 2 86 -63 1 1584 1400 147 6 3 chr5 130955255 130955734 -21581525 + ZP3AR Satellite Satellite 1 480 0 1 1584 212 282 13 53 chr5 130955737 130955812 -21581447 + BC1_Mm scRNA scRNA 32 103 -49 1 1584 215 152 0 21 chr5 130956132 130956179 -21581080 + (TA)n Simple_repeat Simple_repeat 2 47 0 1 1584 555 56 0 0 chr5 130956459 130956530 -21580729 + (TCCC)n Simple_repeat Simple_repeat 2 72 0 1 1584 1534 63 3 0 chr5 130956597 130957017 -21580242 - ZP3AR Satellite Satellite -91 421 1 1 1584 259 267 0 26 chr5 130957018 130957095 -21580164 + CT-rich Low_complexity Low_complexity 1 75 0 1 1584 255 186 41 39 chr5 130957095 130957175 -21580084 - PB1D10 SINE Alu -40 107 24 1 1584 516 255 140 0 chr5 130957514 130957671 -21579588 - B3A SINE B2 -18 180 2 1 1584 258 32 0 0 chr5 130957875 130957906 -21579353 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1584 481 318 33 74 chr5 130957950 130958225 -21579034 - B4A SINE B4 -16 276 3 1 1584 418 205 181 0 chr5 130958502 130958613 -21578646 - ID_B1 SINE B4 -10 214 87 1 1584 453 221 53 15 chr5 130958642 130958775 -21578484 + B1F SINE Alu 1 138 -11 1 1584 495 0 0 0 chr5 130958864 130958919 -21578340 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1584 296 292 0 0 chr5 130958958 130959030 -21578229 + ID4 SINE ID 2 73 -10 1 1584 1115 231 24 142 chr5 130959428 130959837 -21577422 - MTE2a LTR MaLR 0 379 19 1 1584 309 315 20 81 chr5 130959920 130960038 -21577221 + Charlie7 DNA MER1_type 1755 1863 -749 1 1584 210 37 0 0 chr5 130960038 130960065 -21577194 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 1584 309 315 20 81 chr5 130960065 130960139 -21577120 + Charlie7 DNA MER1_type 1864 1935 -677 1 1584 375 209 0 23 chr5 130960139 130960227 -21577032 + B4 SINE B4 1 86 -206 1 1584 224 282 0 68 chr5 130960227 130960257 -21577002 + BC1_Mm scRNA scRNA 1 110 -42 1 1584 198 182 0 0 chr5 130960333 130960399 -21576860 + (CAGCC)n Simple_repeat Simple_repeat 3 68 0 1 1584 443 254 90 0 chr5 130960399 130960521 -21576738 + B4 SINE B4 156 288 -4 1 1584 297 0 0 0 chr5 130960554 130960587 -21576672 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1584 630 278 28 11 chr5 130960632 130960814 -21576445 + B3 SINE B2 1 185 -31 1 1584 243 88 0 0 chr5 130960817 130960851 -21576408 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1584 463 332 87 16 chr5 130960932 130961244 -21576015 + Charlie7 DNA MER1_type 1962 2295 -317 1 1584 392 237 164 7 chr5 130961313 130961453 -21575806 - RSINE1 SINE B4 0 165 4 1 1584 464 224 8 33 chr5 130961472 130961592 -21575667 + PB1D10 SINE Alu 1 117 0 1 1584 183 129 0 0 chr5 130961597 130961628 -21575631 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1 1584 198 0 0 0 chr5 130961873 130961895 -21575364 + (TTA)n Simple_repeat Simple_repeat 1 22 0 1 1584 871 234 20 15 chr5 130962076 130962271 -21574988 - B3A SINE B2 -1 197 2 1 1584 8432 75 5 1 chr5 130962310 130964141 -21573118 - L1_Mus1 LINE L1 0 6567 4729 1 1584 1218 95 1 2 chr5 130964131 130964315 -21572944 - L1_Mus1 LINE L1 -2094 4046 3860 1 1584 586 234 0 16 chr5 130964397 130964523 -21572736 - B1F SINE Alu -21 128 5 1 1584 1694 190 43 11 chr5 130964720 130965072 -21572187 + MTEa LTR MaLR 5 367 -12 1 1584 801 264 0 0 chr5 130965283 130965446 -21571813 - RSINE1 SINE B4 0 165 3 1 1584 328 250 72 10 chr5 130965555 130965652 -21571607 + MLT1F2 LTR MaLR 456 558 -2 1 1584 342 278 9 0 chr5 130965727 130965842 -21571417 + PB1D7 SINE Alu 1 116 -4 1 1584 539 316 27 26 chr5 130965844 130966048 -21571211 + B3A SINE B2 1 214 -2 1 1584 249 197 61 73 chr5 130966269 130966351 -21570908 - L1_Mur3 LINE L1 -2039 4104 4024 1 1584 512 213 93 0 chr5 130966390 130966498 -21570761 - B1F SINE Alu -31 118 1 1 1584 381 294 0 40 chr5 130966515 130966667 -21570592 - L1_Mur3 LINE L1 -2143 3997 3843 1 1584 368 289 11 0 chr5 130966730 130966820 -21570439 - RSINE1 SINE B4 -11 154 64 1 1584 262 208 0 0 chr5 130966897 130966950 -21570309 - RSINE1 SINE B4 -100 65 13 1 1584 507 212 57 28 chr5 130966993 130967134 -21570125 + B1F SINE Alu 5 149 0 1 1584 526 181 204 50 chr5 130967136 130967285 -21569974 + B3A SINE B2 6 174 -42 1 1584 480 18 0 0 chr5 130967339 130967396 -21569863 + (TA)n Simple_repeat Simple_repeat 1 57 0 1 1584 270 232 0 0 chr5 130967494 130967550 -21569709 - L1M6 LINE L1 -5615 881 826 1 1584 359 307 104 80 chr5 130967755 130968006 -21569253 + B4 SINE B4 24 280 -12 1 1584 332 307 0 19 chr5 130968619 130968693 -21568566 + polypyrimidine Low_complexity Low_complexity 29 101 0 1 1584 1135 95 0 16 chr5 130968693 130968875 -21568384 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 1 1584 332 307 0 19 chr5 130968875 130968903 -21568356 + polypyrimidine Low_complexity Low_complexity 1 28 0 1 1584 1309 110 0 124 chr5 130969448 130969581 -21567678 - URR1B DNA MER1_type 0 225 106 1 1584 1103 56 42 14 chr5 130969581 130969725 -21567534 + B1_Mus1 SINE Alu 1 148 0 1 1584 1309 110 0 124 chr5 130969725 130969841 -21567418 - URR1B DNA MER1_type -120 105 7 1 1584 1024 257 124 12 chr5 130970177 130970500 -21566759 - MTE2a LTR MaLR -6 373 15 1 1584 400 228 17 12 chr5 130970569 130970742 -21566517 + (TG)n Simple_repeat Simple_repeat 1 174 0 1 1584 420 188 15 8 chr5 130970788 130970922 -21566337 + (TG)n Simple_repeat Simple_repeat 1 135 0 1 1584 355 210 61 12 chr5 130971011 130971093 -21566166 - B4 SINE B4 -206 86 1 1 1584 607 266 22 6 chr5 130971147 130971325 -21565934 - MLT1A1 LTR MaLR 0 408 228 1 1584 663 13 0 0 chr5 130971354 130971430 -21565829 + (GA)n Simple_repeat Simple_repeat 1 76 0 1 1584 1509 99 4 37 chr5 130971473 130971510 -21565749 - Lx2 LINE L1 0 6997 6965 1 1584 5614 63 18 3 chr5 130971510 130972228 -21565031 - L1_Mus3 LINE L1 0 6638 5910 1 1584 1509 99 4 37 chr5 130972228 130972431 -21564828 - Lx2 LINE L1 -33 6964 6765 1 1584 8129 127 5 14 chr5 130972420 130974525 -21562734 - Lx2 LINE L1 -352 6645 4559 1 1584 593 268 29 127 chr5 130974525 130974769 -21562490 - B4A SINE B4 -70 222 3 1 1584 1292 269 56 3 chr5 130975359 130975717 -21561542 - MTEa LTR MaLR 0 379 3 1 1584 238 255 0 0 chr5 130975743 130975790 -21561469 + polypyrimidine Low_complexity Low_complexity 2 48 0 1 1584 659 161 23 0 chr5 130976821 130976951 -21560308 + (TATATG)n Simple_repeat Simple_repeat 6 138 0 1 1584 673 278 0 12 chr5 130976951 130977115 -21560144 - RSINE1 SINE B4 -2 163 2 1 1584 329 341 83 22 chr5 130977141 130977321 -21559938 + RMER30 DNA MER1_type 5 195 -7 1 1584 520 296 44 20 chr5 130977508 130977711 -21559548 - RMER15 LTR ERVL 0 575 368 1 1584 251 262 23 70 chr5 130978203 130978289 -21558970 - B4A SINE B4 -67 225 144 1 1584 191 330 38 28 chr5 130978558 130978664 -21558595 - L2 LINE L2 -907 2512 2406 1 1584 481 204 6 25 chr5 130978984 130979145 -21558114 + CT-rich Low_complexity Low_complexity 3 160 0 1 1584 194 217 0 61 chr5 130979140 130979238 -21558021 + T-rich Low_complexity Low_complexity 3 94 0 1 1584 318 248 26 103 chr5 130979239 130979356 -21557903 - B1F1 SINE Alu -21 128 21 1 1584 225 265 0 0 chr5 130979681 130979730 -21557529 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1584 1090 233 74 15 chr5 130979730 130979756 -21557503 - B4 SINE B4 0 292 267 1 1584 207 0 0 0 chr5 130979756 130979779 -21557480 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1584 1090 233 74 15 chr5 130979779 130980022 -21557237 - B4 SINE B4 -26 266 8 1 1584 283 244 10 113 chr5 130980259 130980356 -21556903 + MT2B2 LTR ERVL 155 241 -343 1 1584 403 237 50 30 chr5 130980280 130980380 -21556879 + B1F SINE Alu 9 110 -39 1 1584 556 277 76 60 chr5 130980588 130980838 -21556421 - B4A SINE B4 -38 254 1 1 1584 264 319 0 100 chr5 130981091 130981241 -21556018 + B1F SINE Alu 2 136 -13 1 1584 257 173 12 62 chr5 130981329 130981409 -21555850 + A-rich Low_complexity Low_complexity 2 77 0 1 1584 532 278 6 95 chr5 130981621 130981800 -21555459 - RSINE1 SINE B4 0 165 3 1 1584 237 65 0 0 chr5 130981861 130981892 -21555367 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1 1584 222 275 71 64 chr5 130982370 130982510 -21554749 + B1F1 SINE Alu 9 149 0 1 1584 361 0 0 0 chr5 130982902 130982945 -21554314 - ORR1A3 LTR MaLR 0 326 284 1 1584 450 0 0 0 chr5 130982981 130983031 -21554228 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1584 1922 108 33 0 chr5 130983047 130983354 -21553905 - ORR1A3 LTR MaLR -8 318 2 1 1584 213 154 0 0 chr5 130983354 130983393 -21553866 + (CCA)n Simple_repeat Simple_repeat 3 41 0 1 1584 345 47 0 0 chr5 130983393 130983436 -21553823 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1584 309 338 0 0 chr5 130983908 130983988 -21553271 + ID4 SINE ID 4 83 0 1 1584 722 145 20 20 chr5 130984025 130984320 -21552939 + (CAGA)n Simple_repeat Simple_repeat 1 295 0 1 1584 223 229 0 0 chr5 130984323 130984371 -21552888 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1584 334 100 0 0 chr5 130984371 130984421 -21552838 + HAL1-3A_ME LINE L1 1976 2025 -833 1 1584 462 261 9 0 chr5 130984600 130984711 -21552548 - MLT1A0 LTR MaLR 0 365 254 1 1584 23 54 0 0 chr5 130985101 130985138 -21552121 + AT_rich Low_complexity Low_complexity 1 37 0 1 1584 620 245 24 30 chr5 130985549 130985564 -21551695 - B3A SINE B2 -4 194 180 1 1584 387 0 0 0 chr5 130985564 130985607 -21551652 + (TC)n Simple_repeat Simple_repeat 2 44 0 1 1584 620 245 24 30 chr5 130985607 130985759 -21551500 - B3A SINE B2 -19 179 28 1 1584 2701 164 42 45 chr5 130985901 130986431 -21550828 - RLTR11A LTR ERVK 0 528 1 1 1584 252 311 69 40 chr5 130986492 130986666 -21550593 + ORR1E LTR MaLR 56 234 -125 1 1584 801 254 72 19 chr5 130986822 130987031 -21550228 - B4 SINE B4 -70 222 3 1 1584 292 318 101 45 chr5 130988030 130988289 -21548970 - ORR1E LTR MaLR -7 372 80 1 1584 725 217 59 171 chr5 130988290 130988629 -21548630 + MTE2a LTR MaLR 1 301 -78 1 1584 225 128 0 0 chr5 130988683 130988730 -21548529 + (TTTTTA)n Simple_repeat Simple_repeat 6 52 0 1 1584 1886 116 25 118 chr5 130989476 130989839 -21547420 - ORR1A4 LTR MaLR 0 329 1 1 1584 333 0 0 0 chr5 130990507 130990544 -21546715 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1584 435 38 0 0 chr5 130990544 130990596 -21546663 + (GA)n Simple_repeat Simple_repeat 1 53 0 1 1584 410 304 9 26 chr5 130990618 130990733 -21546526 - B4 SINE B4 0 292 180 1 1584 1171 212 66 0 chr5 130990834 130991075 -21546184 + MTD LTR MaLR 148 404 -15 1 1584 668 223 89 18 chr5 130991079 130991248 -21546011 - B4 SINE B4 -111 181 1 1 1584 838 237 6 0 chr5 130991414 130991587 -21545672 - B3A SINE B2 -24 174 1 1 1584 486 75 0 0 chr5 130991643 130991710 -21545549 + (CA)n Simple_repeat Simple_repeat 1 67 0 1 1584 351 287 9 9 chr5 130991732 130991841 -21545418 + PB1D9 SINE Alu 4 112 -8 1 1584 539 320 0 26 chr5 130991991 130992145 -21545114 - RSINE1 SINE B4 0 165 16 1 1584 256 214 8 8 chr5 130992631 130992760 -21544499 + CT-rich Low_complexity Low_complexity 1 129 0 1 1584 807 144 0 0 chr5 130992780 130992919 -21544340 + (TTTC)n Simple_repeat Simple_repeat 1 139 0 1 1584 242 312 12 0 chr5 130992919 130992999 -21544260 - ID4_ SINE ID 0 83 3 1 1584 341 305 81 6 chr5 130993050 130993191 -21544068 - B1F SINE Alu -2 147 1 1 1584 559 299 68 32 chr5 130993258 130993448 -21543811 - B3 SINE B2 -13 203 7 1 1584 22 0 0 0 chr5 130993493 130993515 -21543744 + AT_rich Low_complexity Low_complexity 1 22 0 1 1584 2337 162 34 2 chr5 130993879 130994287 -21542972 + MTC LTR MaLR 1 421 0 1 1584 636 261 32 49 chr5 130994614 130994799 -21542460 + B3A SINE B2 1 182 -16 1 1584 779 196 0 6 chr5 130994799 130994968 -21542291 + (CATATA)n Simple_repeat Simple_repeat 3 170 0 1 1584 273 260 0 110 chr5 130995260 130995342 -21541917 - B4A SINE B4 0 292 220 1 1584 203 88 29 0 chr5 130995446 130995480 -21541779 + (TCC)n Simple_repeat Simple_repeat 3 37 0 1 1584 1078 308 62 8 chr5 130995482 130995855 -21541404 - Lx8 LINE L1 -54 7419 7027 1 1584 324 239 45 0 chr5 130995856 130995944 -21541315 - B4A SINE B4 -62 230 139 1 1584 225 0 0 0 chr5 130996046 130996071 -21541188 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1584 1200 68 0 0 chr5 130996071 130996218 -21541041 - B1_Mus1 SINE Alu 0 148 2 1 1584 651 250 122 0 chr5 130996483 130996671 -21540588 + B3 SINE B2 4 214 -2 1 1584 274 261 169 11 chr5 130997065 130997154 -21540105 + B3A SINE B2 57 159 -39 1 1584 276 373 63 21 chr5 130997286 130997475 -21539784 - L4 LINE RTE -1149 880 684 1 1584 255 31 0 0 chr5 130997566 130997598 -21539661 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1584 255 281 124 0 chr5 130997622 130997711 -21539548 + PB1D10 SINE Alu 18 117 0 1 1584 517 221 9 9 chr5 130998023 130998137 -21539122 + ZP3AR Satellite Satellite 21 134 -78 1 1584 266 281 0 22 chr5 130998212 130998303 -21538956 + CT-rich Low_complexity Low_complexity 2 90 0 1 1584 290 246 112 88 chr5 130998304 130998429 -21538830 - B1F SINE Alu 0 149 22 1 1584 234 91 0 0 chr5 130998436 130998469 -21538790 + (ATG)n Simple_repeat Simple_repeat 3 35 0 1 1584 3062 26 0 0 chr5 130999051 130999397 -21537862 - ORR1A0 LTR MaLR 0 346 1 1 1584 43 0 0 0 chr5 130999557 130999600 -21537659 + AT_rich Low_complexity Low_complexity 1 43 0 1 1584 677 202 0 0 chr5 130999634 130999763 -21537496 - B3 SINE B2 -86 130 2 1 1584 326 269 102 0 chr5 130999768 130999876 -21537383 + MTE2a LTR MaLR 3 121 -258 1 1584 251 283 23 152 chr5 130999829 131000000 -21537259 + MT2A LTR ERVL 75 223 -310 1 1584 375 60 0 0 chr5 131000004 131000054 -21537205 + (CTG)n Simple_repeat Simple_repeat 1 50 0 1 1584 340 333 36 7 chr5 131000057 131000196 -21537063 + MT2A LTR ERVL 246 388 -145 2 1584 229 341 158 0 chr5 131000202 131000366 -21536893 + MT2A LTR ERVL 343 532 -1 2 1584 3563 105 24 110 chr5 131000920 131001411 -21535848 + RMER6A LTR ERVK 74 489 -267 3 1584 540 30 0 0 chr5 131001411 131001477 -21535782 + (GA)n Simple_repeat Simple_repeat 1 66 0 4 1584 3563 105 24 110 chr5 131001477 131001732 -21535527 + RMER6A LTR ERVK 490 755 -1 3 1584 923 301 47 9 chr5 131001742 131002214 -21535045 + MERVL_2A-int LTR ERVL 100 652 -5109 5 1584 1537 211 50 86 chr5 131002227 131002646 -21534613 + MTD LTR MaLR 8 411 -8 6 1584 3671 224 75 19 chr5 131002650 131003662 -21533597 + MERVL_2A-int LTR ERVL 648 1781 -3980 5 1584 198 0 0 0 chr5 131003662 131003684 -21533575 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 7 1584 402 257 0 58 chr5 131003684 131003716 -21533543 + MERVL_2A-int LTR ERVL 1782 1809 -3952 5 1584 3069 256 34 7 chr5 131003720 131004427 -21532832 + MERVL_2A-int LTR ERVL 2462 3187 -2574 5 1584 277 209 63 98 chr5 131004592 131004735 -21532524 - RLTR12B LTR ERVK -243 285 148 8 1584 489 181 12 0 chr5 131004764 131004847 -21532412 + MERVL-int LTR ERVL 3076 3159 -2326 9 1584 241 254 14 29 chr5 131005121 131005190 -21532069 - ID4_ SINE ID -2 81 14 1 1584 1433 95 19 5 chr5 131005190 131005600 -21531659 + (TCTA)n Simple_repeat Simple_repeat 1 415 0 1 1584 360 319 21 14 chr5 131005601 131005741 -21531518 - B1F1 SINE Alu -8 141 1 1 1584 1672 184 90 0 chr5 131006497 131006840 -21530419 + ORR1D1 LTR MaLR 1 374 0 1 1584 573 28 0 0 chr5 131006844 131006915 -21530344 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1584 317 364 7 29 chr5 131006922 131007058 -21530201 - B4A SINE B4 -20 272 140 1 1584 980 58 7 14 chr5 131007187 131007326 -21529933 - B1_Mm SINE Alu -1 146 9 1 1584 428 250 14 69 chr5 131007365 131007528 -21529731 + MTE2a LTR MaLR 3 137 -222 1 1584 214 208 0 20 chr5 131007585 131007634 -21529625 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 1 1584 467 241 80 0 chr5 131007644 131007756 -21529503 - B3A SINE B2 -77 121 1 1 1584 369 0 0 0 chr5 131007828 131007869 -21529390 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 1584 647 237 7 0 chr5 131007873 131008008 -21529251 - B1F SINE Alu -12 137 2 2 1584 423 0 0 0 chr5 131008581 131008628 -21528631 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1584 216 0 0 0 chr5 131008628 131008652 -21528607 + (CAT)n Simple_repeat Simple_repeat 3 26 0 2 1584 186 43 0 0 chr5 131009330 131009353 -21527906 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 1584 444 289 96 19 chr5 131009373 131009581 -21527678 - B4A SINE B4 -1 291 68 2 1584 431 224 15 108 chr5 131009616 131009746 -21527513 - MTE2b LTR MaLR -261 118 1 2 1584 325 256 99 33 chr5 131009896 131010017 -21527242 + L1MA4 LINE L1 5833 5961 -339 2 1584 1951 95 42 7 chr5 131010089 131010397 -21526862 + ORR1A2 LTR MaLR 1 319 -8 2 1584 968 216 66 93 chr5 131010444 131010776 -21526483 + MTE2a LTR MaLR 57 379 0 1 1584 540 0 0 0 chr5 131010866 131010926 -21526333 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 1584 262 262 16 0 chr5 131010926 131010987 -21526272 + ID SINE ID 5 66 -158 3 1584 302 273 45 9 chr5 131011040 131011151 -21526108 + B1F SINE Alu 1 115 -34 3 1584 587 222 48 0 chr5 131011169 131011295 -21525964 + ZP3AR Satellite Satellite 45 176 -36 3 1584 27 0 0 0 chr5 131011328 131011355 -21525904 + AT_rich Low_complexity Low_complexity 1 27 0 3 1584 1357 176 165 32 chr5 131011899 131012245 -21525014 + MTB LTR MaLR 1 392 -8 3 1584 255 31 0 0 chr5 131012342 131012374 -21524885 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 3 1584 200 139 22 65 chr5 131012611 131012657 -21524602 + CT-rich Low_complexity Low_complexity 3 46 0 3 1584 706 194 77 1 chr5 131012662 131012841 -21524418 - MTD LTR MaLR -14 405 229 3 1584 438 267 43 0 chr5 131012858 131012974 -21524285 - MTD LTR MaLR -298 121 1 3 1584 470 86 54 0 chr5 131013020 131013113 -21524146 + (TCCC)n Simple_repeat Simple_repeat 4 101 0 3 1584 253 276 0 17 chr5 131013118 131013177 -21524082 - ID4 SINE ID -17 66 9 3 1584 599 172 0 0 chr5 131013182 131013281 -21523978 - PB1D10 SINE Alu -3 114 16 4 1584 259 246 223 18 chr5 131013185 131013297 -21523962 - B4A SINE B4 -71 221 87 4 1584 1086 44 0 0 chr5 131013823 131013959 -21523300 + (TG)n Simple_repeat Simple_repeat 1 136 0 4 1584 374 319 47 60 chr5 131013962 131014112 -21523147 - B3A SINE B2 -45 153 6 4 1584 404 246 64 0 chr5 131014187 131014294 -21522965 + ORR1E LTR MaLR 13 126 -233 4 1584 227 175 67 101 chr5 131014294 131014383 -21522876 - MTD LTR MaLR -1 418 333 4 1584 621 296 11 32 chr5 131014494 131014679 -21522580 - B3A SINE B2 -17 181 1 4 1584 759 291 30 107 chr5 131014911 131015350 -21521909 - MTD LTR MaLR -14 405 1 4 1584 246 296 12 0 chr5 131015773 131015847 -21521412 + B1F SINE Alu 3 81 -36 4 1584 531 335 20 20 chr5 131015842 131016037 -21521222 + RMER30 DNA MER1_type 7 201 -1 4 1584 3955 164 69 68 chr5 131016050 131016931 -21520328 + RMER19B LTR ERVK 1 882 -20 5 1584 300 27 0 0 chr5 131017157 131017194 -21520065 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1584 195 42 0 0 chr5 131017713 131017737 -21519522 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1584 320 236 56 0 chr5 131017909 131017998 -21519261 - L1MA4 LINE L1 -376 5924 5831 5 1584 712 173 45 26 chr5 131018095 131018249 -21519010 + MTD LTR MaLR 1 157 -262 5 1584 1564 197 176 3 chr5 131018325 131018502 -21518757 + MTD LTR MaLR 1 201 -218 5 1584 513 0 0 0 chr5 131018502 131018559 -21518700 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 5 1584 1564 197 176 3 chr5 131018559 131018738 -21518521 + MTD LTR MaLR 202 418 -1 5 1584 233 210 0 75 chr5 131019035 131019102 -21518157 - B1F SINE Alu -87 62 1 5 1584 606 28 0 0 chr5 131019806 131019878 -21517381 + (TC)n Simple_repeat Simple_repeat 2 73 0 5 1584 407 301 7 20 chr5 131019908 131020054 -21517205 - B1F1 SINE Alu -1 148 5 5 1584 425 229 229 22 chr5 131020111 131020290 -21516969 + ID_B1 SINE B4 2 217 -7 6 1584 204 111 0 0 chr5 131021126 131021162 -21516097 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1584 571 10 69 39 chr5 131021233 131021335 -21515924 + (TCCCC)n Simple_repeat Simple_repeat 4 108 0 6 1584 626 177 123 0 chr5 131021335 131021465 -21515794 - B1_Mus1 SINE Alu -1 147 2 6 1584 747 0 0 0 chr5 131021468 131021551 -21515708 + (TTC)n Simple_repeat Simple_repeat 1 83 0 6 1584 1658 103 25 39 chr5 131021555 131021837 -21515422 - Lx2A1 LINE L1 -24 6984 6707 6 1584 821 266 90 42 chr5 131021869 131022179 -21515080 - Lx8 LINE L1 -2 7471 7147 6 1584 404 152 15 0 chr5 131022176 131022242 -21515017 + Lx8 LINE L1 7069 7135 -338 6 1584 647 308 14 46 chr5 131022258 131022476 -21514783 - B4A SINE B4 -74 218 8 6 1584 326 239 97 35 chr5 131023130 131023243 -21514016 + ID_B1 SINE B4 104 223 -1 6 1584 555 227 75 63 chr5 131023487 131023661 -21513598 - B3A SINE B2 -15 183 8 7 1584 212 292 79 0 chr5 131023752 131023841 -21513418 - B1F1 SINE Alu -52 97 2 7 1584 987 280 33 7 chr5 131023914 131024187 -21513072 - B4 SINE B4 -1 291 12 7 1584 267 103 0 0 chr5 131024203 131024242 -21513017 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 7 1584 1163 62 0 0 chr5 131024242 131024388 -21512871 - B1_Mus1 SINE Alu -2 146 1 7 1584 707 274 26 0 chr5 131024437 131024590 -21512669 - B3A SINE B2 -22 176 20 7 1584 763 278 47 14 chr5 131024605 131024820 -21512439 - ID_B1 SINE B4 -2 222 1 7 1584 299 304 90 82 chr5 131025465 131025587 -21511672 - PB1D10 SINE Alu -4 123 1 7 1584 808 235 31 26 chr5 131025598 131025790 -21511469 - ID_B1 SINE B4 0 224 32 7 1584 264 229 0 0 chr5 131025743 131025804 -21511455 - ID4 SINE ID -6 77 17 7 1584 706 254 42 38 chr5 131026106 131026319 -21510940 + ID_B1 SINE B4 1 214 -10 8 1584 468 286 8 16 chr5 131026319 131026440 -21510819 + B3A SINE B2 31 150 -48 8 1584 324 0 0 0 chr5 131026449 131026485 -21510774 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1584 23 54 0 0 chr5 131026492 131026529 -21510730 + AT_rich Low_complexity Low_complexity 1 37 0 8 1584 716 263 163 16 chr5 131027175 131027488 -21509771 + MTE2b LTR MaLR 17 375 -4 8 1584 230 229 15 62 chr5 131027555 131027620 -21509639 + MLT1E2 LTR MaLR 1 62 -565 8 1584 685 311 42 0 chr5 131027788 131027978 -21509281 - B4 SINE B4 -86 206 9 8 1584 284 275 105 15 chr5 131028037 131028170 -21509089 - L1MB8 LINE L1 -93 6085 5941 8 1584 247 286 0 0 chr5 131028173 131028229 -21509030 + LTR16D2 LTR ERVL 517 572 0 8 1584 309 295 62 62 chr5 131028528 131028705 -21508554 - MTEb LTR MaLR -2 377 201 8 1584 219 22 85 43 chr5 131028714 131028761 -21508498 + (GGGA)n Simple_repeat Simple_repeat 1 49 0 9 1584 698 286 27 19 chr5 131028763 131028972 -21508287 - MTEb LTR MaLR -164 215 6 8 1584 426 306 77 20 chr5 131028974 131029221 -21508038 + B4A SINE B4 1 261 -31 9 1584 236 30 30 0 chr5 131029273 131029306 -21507953 + (CA)n Simple_repeat Simple_repeat 1 34 0 9 1584 231 36 0 0 chr5 131029421 131029449 -21507810 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1584 644 246 89 87 chr5 131029612 131029932 -21507327 + MTE2a LTR MaLR 82 419 0 9 1584 425 290 11 69 chr5 131030590 131030764 -21506495 + RSINE1 SINE B4 2 165 0 9 1584 402 174 29 0 chr5 131031521 131031590 -21505669 - ID4 SINE ID -11 72 2 9 1584 2533 171 60 125 chr5 131031861 131032515 -21504744 - RMER19C LTR ERVK 0 611 1 9 1584 720 314 29 24 chr5 131032733 131032942 -21504317 - ID_B1 SINE B4 -4 220 11 9 1584 643 195 6 18 chr5 131033228 131033525 -21503734 + CT-rich Low_complexity Low_complexity 1 293 0 9 1584 434 198 0 20 chr5 131033533 131033631 -21503628 - PB1D10 SINE Alu 0 117 22 1 1584 22 0 0 0 chr5 131033802 131033824 -21503435 + AT_rich Low_complexity Low_complexity 1 22 0 1 1584 1196 63 0 0 chr5 131033831 131033974 -21503285 + B1_Mus2 SINE Alu 5 147 0 1 1584 638 200 0 0 chr5 131034068 131034183 -21503076 - PB1D9 SINE Alu -5 115 1 1 1584 395 298 0 9 chr5 131034391 131034496 -21502763 + PB1D10 SINE Alu 5 108 -9 1 1584 230 174 22 0 chr5 131034543 131034589 -21502670 + ZP3AR Satellite Satellite 22 68 -144 1 1584 21 36 0 0 chr5 131034958 131034986 -21502273 + AT_rich Low_complexity Low_complexity 1 28 0 1 1584 312 135 0 0 chr5 131035098 131035150 -21502109 + RSINE1 SINE B4 1 52 -113 1 1584 264 130 0 0 chr5 131035168 131035214 -21502045 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1584 471 287 30 96 chr5 131035370 131035505 -21501754 - PB1D10 SINE Alu -23 126 1 1 1584 354 262 285 0 chr5 131035911 131036083 -21501176 + ID_B1 SINE B4 1 221 -3 1 1584 244 310 0 0 chr5 131036111 131036182 -21501077 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1584 337 360 56 0 chr5 131036279 131036457 -21500802 - MIR SINE MIR -55 207 20 1 1584 711 209 59 0 chr5 131036652 131036805 -21500454 - RSINE1 SINE B4 -2 163 2 1 1584 842 282 73 22 chr5 131036892 131037164 -21500095 - B4A SINE B4 -5 287 2 1 1584 519 128 0 0 chr5 131037168 131037254 -21500005 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 1584 24 0 0 0 chr5 131037282 131037306 -21499953 + AT_rich Low_complexity Low_complexity 1 24 0 1 1584 441 0 0 0 chr5 131037475 131037524 -21499735 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1584 506 264 15 8 chr5 131037539 131037669 -21499590 - B3A SINE B2 -67 131 1 1 1584 805 275 74 39 chr5 131038357 131038614 -21498645 - B4 SINE B4 -20 272 7 1 1584 406 198 52 0 chr5 131038904 131039000 -21498259 + B1F SINE Alu 1 101 -48 1 1584 274 288 41 0 chr5 131039554 131039627 -21497632 - ID4 SINE ID 0 83 8 1 1584 264 163 20 0 chr5 131039639 131039688 -21497571 - ZP3AR Satellite Satellite -119 93 44 1 1584 440 268 40 24 chr5 131039703 131039829 -21497430 - B1F SINE Alu -8 141 14 1 1584 786 254 173 26 chr5 131040269 131040621 -21496638 - MTD LTR MaLR -15 404 1 1 1584 527 303 10 51 chr5 131040621 131040804 -21496455 - RMER15 LTR ERVL -89 486 312 1 1584 431 314 16 39 chr5 131040987 131041169 -21496090 + MLT1D LTR MaLR 284 461 -44 1 1584 192 217 0 0 chr5 131041221 131041267 -21495992 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1 1584 927 211 58 0 chr5 131041267 131041475 -21495784 - B4 SINE B4 -70 222 3 1 1584 459 0 0 0 chr5 131041712 131041763 -21495496 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 1 1584 396 325 0 8 chr5 131041833 131041954 -21495305 - PB1D7 SINE Alu 0 120 1 1 1584 681 263 64 11 chr5 131042234 131042422 -21494837 + B3A SINE B2 1 198 0 1 1584 449 289 7 0 chr5 131042855 131042990 -21494269 + ZP3AR Satellite Satellite 45 180 -32 1 1584 191 207 51 17 chr5 131043056 131043115 -21494144 - L2 LINE L2 -810 2609 2549 1 1584 250 289 11 57 chr5 131043652 131043740 -21493519 + ID_B1 SINE B4 78 161 -63 1 1584 255 302 0 59 chr5 131043679 131043781 -21493478 + PB1D10 SINE Alu 20 115 -2 1 1584 207 0 0 0 chr5 131043958 131043981 -21493278 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1584 189 0 0 0 chr5 131044212 131044233 -21493026 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1584 1234 41 0 0 chr5 131044233 131044380 -21492879 - B1_Mus2 SINE Alu 0 147 1 1 1584 629 251 28 39 chr5 131044445 131044627 -21492632 - B3 SINE B2 -15 201 22 1 1584 404 235 69 7 chr5 131044622 131044742 -21492517 + B3 SINE B2 53 188 -7 1 1584 378 0 0 0 chr5 131045019 131045061 -21492198 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1584 1055 268 71 104 chr5 131045075 131045583 -21491676 - Lx8 LINE L1 -213 7260 6770 1 1584 288 257 27 13 chr5 131045660 131045735 -21491524 + PB1D10 SINE Alu 4 79 -38 1 1584 800 223 27 5 chr5 131045772 131045957 -21491302 + B3 SINE B2 28 216 0 1 1584 567 0 0 0 chr5 131046040 131046103 -21491156 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 1584 523 40 13 13 chr5 131046104 131046179 -21491080 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1 1584 468 99 0 0 chr5 131046387 131046499 -21490760 + (TCTCTG)n Simple_repeat Simple_repeat 1 112 0 1 1584 654 243 84 6 chr5 131047010 131047188 -21490071 + B3A SINE B2 7 198 0 1 1584 272 320 0 0 chr5 131047226 131047304 -21489955 + ID4 SINE ID 2 79 -4 1 1584 363 303 0 27 chr5 131047437 131047569 -21489690 + B1F SINE Alu 1 120 0 1 1584 600 302 14 10 chr5 131047686 131047893 -21489366 + ID_B1 SINE B4 2 209 -15 1 1584 513 115 0 0 chr5 131047894 131047972 -21489287 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 1 1584 491 144 0 9 chr5 131048423 131048535 -21488724 + GA-rich Low_complexity Low_complexity 1 111 0 1 1584 188 221 8 54 chr5 131048553 131048682 -21488577 + (TATG)n Simple_repeat Simple_repeat 4 126 0 1 1584 641 101 43 47 chr5 131048651 131048907 -21488352 + (TG)n Simple_repeat Simple_repeat 1 254 0 1 1584 859 231 85 60 chr5 131048907 131049188 -21488071 - B4A SINE B4 0 292 5 1 1584 215 264 75 0 chr5 131049192 131049245 -21488014 - B1_Mur1 SINE Alu -2 147 91 1 1584 722 164 117 0 chr5 131049397 131049525 -21487734 - B1_Mus1 SINE Alu -5 143 1 1 1584 433 231 89 24 chr5 131049607 131049731 -21487528 + RSINE1 SINE B4 5 136 -29 1 1584 321 89 0 0 chr5 131050188 131050233 -21487026 + (TTG)n Simple_repeat Simple_repeat 1 45 0 1 1584 290 288 90 0 chr5 131050245 131050343 -21486916 - B1F2 SINE Alu -9 111 1 1 1584 387 275 18 0 chr5 131050362 131050471 -21486788 - B1F SINE Alu -19 130 20 1 1584 255 236 0 0 chr5 131051029 131051101 -21486158 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 1 1584 466 217 101 0 chr5 131051482 131051611 -21485648 - MTE2b LTR MaLR -37 342 201 1 1584 265 292 14 0 chr5 131051766 131051838 -21485421 - MTE2b LTR MaLR -302 77 5 1 1584 370 288 14 28 chr5 131051921 131051988 -21485271 + B1F1 SINE Alu 1 64 -85 1 1584 2155 120 100 3 chr5 131051988 131052347 -21484912 - ORR1B1 LTR MaLR 0 394 1 1 1584 370 288 14 28 chr5 131052347 131052422 -21484837 + B1F1 SINE Alu 65 141 -8 1 1584 382 257 9 9 chr5 131052437 131052543 -21484716 + ZP3AR Satellite Satellite 43 148 -64 1 1584 365 58 19 0 chr5 131052619 131052671 -21484588 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 1 1584 248 350 13 80 chr5 131052684 131052908 -21484351 - L1MB8 LINE L1 -55 6123 5915 1 1584 210 152 33 17 chr5 131053073 131053133 -21484126 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 1 1584 896 264 44 61 chr5 131053194 131053489 -21483770 - B4 SINE B4 0 292 3 1 1584 698 106 8 0 chr5 131054801 131054933 -21482326 + (TCTA)n Simple_repeat Simple_repeat 2 134 0 1 1584 210 71 0 0 chr5 131054958 131054986 -21482273 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1584 622 233 15 15 chr5 131054991 131055126 -21482133 - RSINE1 SINE B4 -25 140 6 1 1584 183 235 0 0 chr5 131055398 131055449 -21481810 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1 1584 651 282 80 80 chr5 131055454 131055743 -21481516 - B4 SINE B4 0 292 4 1 1584 456 261 43 0 chr5 131055752 131055867 -21481392 - PB1D7 SINE Alu 0 120 1 1 1584 310 258 8 16 chr5 131055939 131056061 -21481198 + (CATA)n Simple_repeat Simple_repeat 2 122 0 1 1584 228 163 0 0 chr5 131056074 131056117 -21481142 + (ATGGTG)n Simple_repeat Simple_repeat 6 48 0 1 1584 441 282 122 34 chr5 131056766 131056913 -21480346 + RSINE1 SINE B4 4 163 -2 1 1584 505 318 0 0 chr5 131057302 131057478 -21479781 + (CAT)n Simple_repeat Simple_repeat 1 176 0 1 1584 355 276 39 19 chr5 131057524 131057570 -21479689 + HAL1-2a_MD LINE L1 2345 2390 -634 1 1584 1122 72 0 0 chr5 131057570 131057708 -21479551 + B1_Mus1 SINE Alu 5 142 -6 1 1584 342 0 0 0 chr5 131057711 131057749 -21479510 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1 1584 355 276 39 19 chr5 131057749 131057853 -21479406 + HAL1-2a_MD LINE L1 2391 2498 -526 1 1584 854 309 45 59 chr5 131057939 131058293 -21478966 - MTE2b LTR MaLR -30 349 1 1 1584 397 224 0 0 chr5 131058294 131058370 -21478889 - ID_B1 SINE B4 -67 157 82 1 1584 268 236 62 82 chr5 131058411 131058508 -21478751 - MIR SINE MIR -106 162 64 1 1584 581 264 0 33 chr5 131058701 131058854 -21478405 - ZP3AR Satellite Satellite -44 168 21 1 1584 418 286 65 39 chr5 131059298 131059451 -21477808 - B4 SINE B4 -133 159 3 1 1584 1177 258 25 55 chr5 131059607 131060026 -21477233 + MTE2a LTR MaLR 5 419 0 1 1584 936 266 73 29 chr5 131060919 131061263 -21475996 + ORR1E LTR MaLR 1 359 0 1 1584 286 312 36 0 chr5 131061426 131061538 -21475721 - RMER15 LTR ERVL -50 525 410 1 1584 845 242 49 143 chr5 131061558 131061949 -21475310 - MTE2a LTR MaLR -6 373 20 1 1584 359 198 43 94 chr5 131062524 131062641 -21474618 + MLT1A1 LTR MaLR 291 401 -7 1 1584 21 0 0 0 chr5 131062667 131062688 -21474571 + AT_rich Low_complexity Low_complexity 1 21 0 1 1584 189 0 0 0 chr5 131062758 131062779 -21474480 + (TA)n Simple_repeat Simple_repeat 2 22 0 1 1584 243 0 0 0 chr5 131062782 131062809 -21474450 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1 1584 255 299 0 0 chr5 131062882 131062959 -21474300 - L1MC4 LINE L1 -8 8034 7958 1 1584 234 283 143 38 chr5 131063179 131063587 -21473672 - L1MC4 LINE L1 -139 7903 7430 1 1584 586 325 27 96 chr5 131063668 131063961 -21473298 + B4A SINE B4 1 273 -19 1 1584 828 295 67 44 chr5 131063989 131064098 -21473161 - ORR1E LTR MaLR 0 359 240 2 1584 378 0 0 0 chr5 131064098 131064140 -21473119 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1584 828 295 67 44 chr5 131064140 131064374 -21472885 - ORR1E LTR MaLR -120 239 8 2 1584 832 221 5 27 chr5 131064401 131064587 -21472672 + B3A SINE B2 3 184 -14 2 1584 21 57 0 0 chr5 131064593 131064628 -21472631 + AT_rich Low_complexity Low_complexity 1 35 0 2 1584 210 255 0 0 chr5 131064794 131064845 -21472414 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 2 1584 24 0 0 0 chr5 131065242 131065266 -21471993 + AT_rich Low_complexity Low_complexity 1 24 0 2 1584 224 180 0 39 chr5 131065677 131065729 -21471530 + CT-rich Low_complexity Low_complexity 2 51 0 2 1584 270 279 15 0 chr5 131065742 131065810 -21471449 - ID4 SINE ID -6 77 9 2 1584 574 276 28 0 chr5 131065776 131065921 -21471338 - ZP3AR Satellite Satellite -21 191 43 2 1584 397 296 8 17 chr5 131066011 131066128 -21471131 - PB1D10 SINE Alu -1 116 1 2 1584 505 292 95 8 chr5 131066135 131066397 -21470862 - L1MA5 LINE L1 -2 6298 6014 2 1584 1362 209 61 66 chr5 131066434 131066797 -21470462 + MTE2a LTR MaLR 19 379 0 2 1584 1490 164 22 8 chr5 131066996 131067312 -21469947 - MTC LTR MaLR -3 418 1 2 1584 2051 185 60 5 chr5 131067632 131068029 -21469230 + MTD LTR MaLR 1 419 0 2 1584 258 362 40 48 chr5 131068572 131068949 -21468310 - L1MC LINE L1 -2199 5683 5310 2 1584 1497 44 28 0 chr5 131069039 131069477 -21467782 - ZP3AR Satellite Satellite -37 450 1 2 1584 222 37 0 0 chr5 131069482 131069509 -21467750 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2 1584 371 302 0 17 chr5 131069516 131069634 -21467625 - PB1D10 SINE Alu -1 116 1 2 1584 1721 141 88 10 chr5 131069651 131069959 -21467300 - RMER1B Other Other 0 1066 735 2 1584 2485 188 32 28 chr5 131070012 131070544 -21466715 - RMER5 LTR ERV1 0 534 1 2 1584 1210 224 94 100 chr5 131070628 131071009 -21466250 + MTE2a LTR MaLR 1 379 0 2 1584 280 225 112 0 chr5 131071113 131071202 -21466057 - B3A SINE B2 0 216 118 2 1584 616 233 57 23 chr5 131071201 131071377 -21465882 - B3A SINE B2 -16 182 1 2 1584 828 160 7 65 chr5 131071714 131071868 -21465391 - B1_Mus2 SINE Alu -1 146 2 2 24 397 323 12 33 chr5 131071970 131072264 -21464995 + CT-rich Low_complexity Low_complexity 1 287 0 2 1585 302 317 24 32 chr5 131072900 131073024 -21464235 - ZP3AR Satellite Satellite -54 158 36 2 1585 418 284 0 10 chr5 131073026 131073129 -21464130 - PB1D7 SINE Alu -10 110 9 2 1585 370 257 30 0 chr5 131073355 131073456 -21463803 - B1F SINE Alu 0 149 46 2 1585 22 35 0 0 chr5 131073614 131073643 -21463616 + AT_rich Low_complexity Low_complexity 1 29 0 2 1585 625 248 43 25 chr5 131073643 131073804 -21463455 - RSINE1 SINE B4 0 165 2 2 1585 180 152 0 0 chr5 131074062 131074095 -21463164 + (TG)n Simple_repeat Simple_repeat 2 34 0 2 1585 346 221 0 0 chr5 131074096 131074164 -21463095 - PB1D10 SINE Alu -11 106 39 2 1585 690 235 22 66 chr5 131074173 131074355 -21462904 - B4A SINE B4 -118 174 1 2 1585 218 277 0 0 chr5 131075039 131075086 -21462173 + polypyrimidine Low_complexity Low_complexity 3 49 0 2 1585 311 92 4 21 chr5 131075086 131075151 -21462108 - B1_Mus2 SINE Alu 0 147 60 2 1585 272 215 0 37 chr5 131075583 131075665 -21461594 + CT-rich Low_complexity Low_complexity 3 81 0 2 1585 308 257 92 68 chr5 131075933 131075987 -21461272 + MT2B LTR ERVL 97 154 -447 2 1585 622 236 0 0 chr5 131075987 131076114 -21461145 + B1_Mur1 SINE Alu 1 127 -22 2 1585 420 164 541 0 chr5 131076477 131076623 -21460636 + URR1B DNA MER1_type 1 225 0 2 1585 247 275 61 24 chr5 131077046 131077128 -21460131 + B3 SINE B2 1 85 -131 2 1585 1471 230 57 30 chr5 131077339 131077743 -21459516 + MTD LTR MaLR 5 419 0 2 1585 442 324 147 36 chr5 131078514 131078738 -21458521 + B4 SINE B4 2 250 -42 2 1585 417 287 0 79 chr5 131078776 131078916 -21458343 + ID_B1 SINE B4 78 206 -18 2 1585 870 264 14 28 chr5 131078951 131079165 -21458094 + B3 SINE B2 1 211 -5 2 1585 568 287 33 0 chr5 131080017 131080167 -21457092 + B3A SINE B2 7 161 -37 2 1585 21 0 0 0 chr5 131080187 131080208 -21457051 + AT_rich Low_complexity Low_complexity 1 21 0 2 1585 5695 113 34 1 chr5 131080208 131081040 -21456219 - Lx LINE L1 -9 6645 5787 2 1585 594 60 12 23 chr5 131081075 131081161 -21456098 - B1_Mus2 SINE Alu -5 142 58 2 1585 1244 246 92 14 chr5 131081260 131081607 -21455652 - MTD LTR MaLR -21 398 25 2 1585 681 276 120 62 chr5 131081851 131082125 -21455134 - B4A SINE B4 -2 290 1 2 1585 745 302 62 55 chr5 131082305 131082686 -21454573 + MTE2a LTR MaLR 1 391 -28 2 1585 207 0 0 0 chr5 131082686 131082709 -21454550 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2 1585 617 304 93 58 chr5 131082709 131082725 -21454534 + MTE2a LTR MaLR 392 411 -8 2 1585 721 249 38 27 chr5 131083177 131083363 -21453896 - B3A SINE B2 -10 188 1 2 1585 1214 221 38 44 chr5 131083544 131083837 -21453422 + B4A SINE B4 2 292 0 2 1585 292 299 9 27 chr5 131083837 131083947 -21453312 + (CA)n Simple_repeat Simple_repeat 1 108 0 2 1585 233 260 45 99 chr5 131085074 131085185 -21452074 - MER87 LTR ERV1 -39 502 398 2 1585 1113 244 38 96 chr5 131085224 131085376 -21451883 - MTE2a LTR MaLR -8 371 210 2 1585 444 19 0 0 chr5 131085376 131085429 -21451830 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1585 1113 244 38 96 chr5 131085429 131085670 -21451589 - MTE2a LTR MaLR -170 209 1 2 1585 3065 194 56 18 chr5 131085861 131086491 -21450768 + RMER1B Other Other 404 1057 -9 2 1585 1079 251 19 127 chr5 131086626 131087051 -21450208 + MTE2a LTR MaLR 1 379 0 2 1585 267 262 0 0 chr5 131087225 131087305 -21449954 + (CA)n Simple_repeat Simple_repeat 2 81 0 2 1585 189 0 0 0 chr5 131087302 131087323 -21449936 + (CCA)n Simple_repeat Simple_repeat 3 23 0 2 1585 366 271 0 0 chr5 131088419 131088504 -21448755 + ORR1E LTR MaLR 57 141 -218 2 1585 183 42 0 0 chr5 131088609 131088633 -21448626 + (TTTTTA)n Simple_repeat Simple_repeat 5 28 0 2 1585 1717 229 44 3 chr5 131088752 131089116 -21448143 - MTEa LTR MaLR 0 379 1 2 1585 1196 233 67 62 chr5 131089355 131089551 -21447708 + MTD LTR MaLR 2 197 -222 2 1585 480 35 0 0 chr5 131089551 131089609 -21447650 + (CAAG)n Simple_repeat Simple_repeat 2 59 0 2 1585 1196 233 67 62 chr5 131089609 131089828 -21447431 + MTD LTR MaLR 198 419 0 2 1585 201 233 34 23 chr5 131090196 131090284 -21446975 - MIR3 SINE MIR -3 205 117 2 1585 422 312 132 85 chr5 131090468 131090657 -21446602 - B3A SINE B2 0 198 1 2 1585 1010 211 25 0 chr5 131090689 131090893 -21446366 - B3 SINE B2 -1 215 7 2 1585 459 241 108 48 chr5 131091040 131091206 -21446053 - B4A SINE B4 -3 289 114 2 1585 490 234 195 72 chr5 131091329 131091689 -21445570 + MTE2a LTR MaLR 9 405 -14 2 1585 266 292 91 42 chr5 131091802 131091945 -21445314 + MLT1D LTR MaLR 39 188 -317 2 1585 261 236 0 0 chr5 131091949 131092004 -21445255 + L1M3 LINE L1 5538 5592 -576 2 1585 743 274 6 6 chr5 131092021 131092186 -21445073 + B3A SINE B2 3 167 -31 2 1585 491 305 89 30 chr5 131092199 131092469 -21444790 + L1MA4A LINE L1 5625 5910 -393 2 1585 456 19 0 0 chr5 131092728 131092781 -21444478 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1585 264 281 24 0 chr5 131093151 131093233 -21444026 + CT-rich Low_complexity Low_complexity 4 87 0 2 1585 200 119 23 45 chr5 131093318 131093362 -21443897 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2 1585 859 236 5 23 chr5 131093363 131093580 -21443679 - ID_B1 SINE B4 -1 223 11 2 1585 242 281 0 0 chr5 131093584 131093641 -21443618 + MTEa LTR MaLR 312 368 -11 2 1585 427 279 122 35 chr5 131094125 131094322 -21442937 + B3 SINE B2 2 215 -1 2 1585 524 291 61 32 chr5 131094390 131094670 -21442589 - B4A SINE B4 -4 288 1 2 1585 373 339 117 42 chr5 131094751 131095016 -21442243 - B4 SINE B4 -3 289 5 2 1585 244 309 62 0 chr5 131095292 131095389 -21441870 + PB1D10 SINE Alu 1 103 -14 2 1585 1315 229 57 49 chr5 131095393 131095742 -21441517 + ORR1D2 LTR MaLR 1 352 -18 2 1585 519 254 0 86 chr5 131095749 131095900 -21441359 + MTD LTR MaLR 268 405 -14 2 1585 399 220 20 10 chr5 131096316 131096417 -21440842 - PB1D7 SINE Alu 0 120 19 2 1585 552 200 19 0 chr5 131096512 131096617 -21440642 + B3A SINE B2 1 107 -91 2 1585 475 163 23 0 chr5 131096639 131096725 -21440534 - MTE2a LTR MaLR -125 254 167 2 1585 180 111 0 0 chr5 131096725 131096752 -21440507 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1585 852 225 70 19 chr5 131096837 131097050 -21440209 + URR1A DNA MER1_type 3 226 0 2 1585 201 74 0 0 chr5 131097424 131097451 -21439808 + (ATTTG)n Simple_repeat Simple_repeat 3 29 0 2 1585 254 300 50 10 chr5 131097465 131097566 -21439693 - B1F SINE Alu -7 142 38 2 1585 773 255 10 15 chr5 131097614 131097813 -21439446 - B3A SINE B2 0 198 1 2 1585 391 250 14 29 chr5 131097848 131097988 -21439271 - Lx8 LINE L1 -2 7471 7334 2 1585 377 92 0 50 chr5 131097988 131098068 -21439191 + (TCC)n Simple_repeat Simple_repeat 2 77 0 2 1585 251 206 27 0 chr5 131098522 131098595 -21438664 + (CATATA)n Simple_repeat Simple_repeat 4 78 0 2 1585 886 280 39 46 chr5 131098726 131099010 -21438249 + B4 SINE B4 1 282 -10 2 1585 369 0 0 0 chr5 131099016 131099057 -21438202 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1585 887 238 93 30 chr5 131099708 131099976 -21437283 + B4 SINE B4 7 291 -1 3 1585 701 243 71 121 chr5 131100139 131100462 -21436797 + MTEa LTR MaLR 55 361 -18 3 1585 229 295 12 25 chr5 131100532 131100612 -21436647 + PB1D10 SINE Alu 21 99 -18 3 1585 522 103 0 0 chr5 131100661 131100739 -21436520 + (CA)n Simple_repeat Simple_repeat 2 79 0 3 1585 319 246 16 0 chr5 131101132 131101258 -21436001 + (TG)n Simple_repeat Simple_repeat 2 129 0 3 1585 1039 284 7 7 chr5 131101308 131101585 -21435674 - B4A SINE B4 -14 278 2 3 1585 515 269 16 74 chr5 131102082 131102271 -21434988 - MTEa LTR MaLR 0 379 202 3 1585 379 316 20 15 chr5 131102354 131102568 -21434691 + CT-rich Low_complexity Low_complexity 1 215 0 3 1585 857 79 0 8 chr5 131102573 131102701 -21434558 + (TTTCC)n Simple_repeat Simple_repeat 4 130 0 3 1585 1771 117 45 13 chr5 131102721 131103032 -21434227 - ORR1A4 LTR MaLR -8 321 1 3 1585 918 147 0 0 chr5 131103032 131103189 -21434070 + (TTCC)n Simple_repeat Simple_repeat 2 158 0 3 1585 324 0 0 0 chr5 131103607 131103643 -21433616 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 1585 360 210 49 12 chr5 131104425 131104507 -21432752 - MTEa LTR MaLR -274 85 1 3 1585 898 266 47 18 chr5 131104797 131105076 -21432183 - RMER15 LTR ERVL -14 561 275 3 1585 327 203 0 0 chr5 131105058 131105122 -21432137 + MTD LTR MaLR 342 405 -14 3 1585 1044 290 40 40 chr5 131105501 131105530 -21431729 + ORR1E LTR MaLR 1 26 -333 3 1585 1507 201 53 69 chr5 131105530 131105905 -21431354 + ORR1D1 LTR MaLR 4 372 -2 3 1585 1044 289 51 26 chr5 131105905 131106219 -21431040 + ORR1E LTR MaLR 27 374 -5 3 1585 281 311 57 8 chr5 131106313 131106436 -21430823 + MLT1D LTR MaLR 1 129 -376 3 1585 509 283 68 68 chr5 131106614 131106819 -21430440 - MTEa LTR MaLR -174 205 1 3 1585 661 259 48 67 chr5 131107623 131107857 -21429402 - B4A SINE B4 -47 245 13 3 1585 3356 279 64 23 chr5 131108358 131109426 -21427833 - Lx9 LINE L1 -193 7451 6341 3 1585 665 40 40 0 chr5 131109426 131109527 -21427732 + (CA)n Simple_repeat Simple_repeat 2 106 0 3 1585 2435 257 39 42 chr5 131109709 131110597 -21426662 - L1_Rod LINE L1 -527 5320 4466 3 1585 234 91 0 0 chr5 131110605 131110638 -21426621 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1585 3948 256 41 69 chr5 131111005 131111072 -21426187 - L1_Rod LINE L1 -1412 4435 4350 3 1585 489 76 0 0 chr5 131111072 131111138 -21426121 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1585 3948 256 41 69 chr5 131111138 131112385 -21424874 - L1_Rod LINE L1 -1498 4349 3153 3 1585 1146 82 0 0 chr5 131112385 131112532 -21424727 - B1_Mus2 SINE Alu 0 147 1 3 1585 3947 256 42 68 chr5 131112532 131112675 -21424584 - L1_Rod LINE L1 -2695 3152 3016 3 1585 1420 182 63 20 chr5 131112678 131112981 -21424278 - Lx3C LINE L1 0 6976 6661 3 1585 5244 140 57 17 chr5 131112973 131114069 -21423190 - Lx3C LINE L1 -900 6076 4938 3 1585 3513 114 56 33 chr5 131114065 131114464 -21422795 + L1_Mur2 LINE L1 4329 4728 -1149 3 1585 225 0 0 0 chr5 131114464 131114489 -21422770 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3 1585 3513 114 56 33 chr5 131114489 131114618 -21422641 + L1_Mur2 LINE L1 4729 4873 -1004 3 1585 1259 59 0 6 chr5 131114618 131114788 -21422471 + (GAAA)n Simple_repeat Simple_repeat 3 171 0 3 1585 3513 114 56 33 chr5 131114788 131114867 -21422392 + L1_Mur2 LINE L1 4874 4951 -926 3 1585 4707 237 89 43 chr5 131114864 131116454 -21420805 - L1_Rod LINE L1 -2817 3030 1368 3 1585 870 263 33 19 chr5 131116469 131116682 -21420577 - B3 SINE B2 0 216 1 3 1585 972 264 128 12 chr5 131116689 131117120 -21420139 - L1_Rod LINE L1 -4467 1380 903 3 1585 1336 90 5 21 chr5 131117218 131117411 -21419848 + B2_Mm1a SINE B2 1 190 -3 3 1585 234 259 0 0 chr5 131117891 131117945 -21419314 - tRNA-Ala-GCA tRNA tRNA -21 54 1 3 1585 488 183 0 0 chr5 131117921 131118003 -21419256 - ZP3AR Satellite Satellite -87 125 44 3 1585 590 206 24 8 chr5 131118773 131118900 -21418359 + ID_B1 SINE B4 96 224 0 3 1585 1543 224 159 11 chr5 131118923 131119357 -21417902 - L1_Rod LINE L1 -35 5812 5315 3 1585 262 268 61 0 chr5 131119355 131119437 -21417822 - L1_Rod LINE L1 -877 4970 4884 3 1585 330 221 11 0 chr5 131119438 131119518 -21417741 + ORR1D1 LTR MaLR 295 378 -6 3 1585 527 85 12 0 chr5 131119519 131119601 -21417658 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 3 1585 256 167 0 20 chr5 131120422 131120471 -21416788 + B4A SINE B4 90 137 -155 3 1585 746 64 91 114 chr5 131120427 131120611 -21416648 + B1_Mus1 SINE Alu 9 149 0 3 1585 961 157 66 35 chr5 131120609 131120807 -21416452 - URR1A DNA MER1_type -20 206 3 3 1585 317 374 0 8 chr5 131120921 131121053 -21416206 - MT2A LTR ERVL -74 459 329 3 1585 280 244 85 43 chr5 131121070 131121164 -21416095 + ZP3AR Satellite Satellite 51 148 -64 3 1585 770 264 6 0 chr5 131121663 131121822 -21415437 + RSINE1 SINE B4 2 161 -4 3 1585 483 130 0 0 chr5 131121826 131121903 -21415356 + (TGGA)n Simple_repeat Simple_repeat 3 79 0 3 1585 2823 93 28 0 chr5 131121903 131122291 -21414968 - MTB LTR MaLR 0 400 2 3 1585 294 29 0 0 chr5 131122291 131122326 -21414933 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 3 1585 25 51 0 0 chr5 131122556 131122595 -21414664 + AT_rich Low_complexity Low_complexity 1 39 0 3 1585 628 211 41 21 chr5 131122763 131122908 -21414351 - Lx8 LINE L1 -339 7134 6987 3 1585 1425 216 194 20 chr5 131122919 131123410 -21413849 + RMER4B LTR ERVK 1 576 -9 3 1585 391 318 0 0 chr5 131123451 131123558 -21413701 + B1F1 SINE Alu 10 116 -33 3 1585 353 250 233 0 chr5 131123642 131123762 -21413497 - RMER15 LTR ERVL -9 566 419 3 1585 699 227 75 23 chr5 131123878 131124073 -21413186 - B4 SINE B4 0 292 98 3 1585 508 245 47 0 chr5 131124092 131124198 -21413061 - B1_Mur1 SINE Alu -26 123 13 3 1585 428 345 19 93 chr5 131124198 131124303 -21412956 - ID_B1 SINE B4 -20 201 7 3 1585 957 297 23 11 chr5 131124364 131124715 -21412544 - L1MEf LINE L1 -4591 1609 1255 3 1585 287 130 0 18 chr5 131124756 131124811 -21412448 + (TCC)n Simple_repeat Simple_repeat 2 55 0 3 1585 615 121 0 0 chr5 131125118 131125217 -21412042 + (TCCC)n Simple_repeat Simple_repeat 3 101 0 3 1585 224 213 32 16 chr5 131125218 131125280 -21411979 + CT-rich Low_complexity Low_complexity 5 67 0 3 1585 291 340 9 0 chr5 131125406 131125512 -21411747 + GA-rich Low_complexity Low_complexity 4 110 0 3 1585 2116 171 35 8 chr5 131125568 131125964 -21411295 + MTC LTR MaLR 15 421 0 3 1585 1182 48 14 0 chr5 131126039 131126184 -21411075 + B1_Mus2 SINE Alu 1 147 0 3 1585 216 170 0 0 chr5 131126184 131126237 -21411022 + A-rich Low_complexity Low_complexity 1 53 0 3 1585 270 0 0 0 chr5 131126242 131126272 -21410987 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1585 351 0 0 0 chr5 131126385 131126424 -21410835 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1585 410 304 10 0 chr5 131126429 131126531 -21410728 - PB1D10 SINE Alu -10 107 5 3 1585 441 296 17 0 chr5 131126834 131126949 -21410310 + ID_B1 SINE B4 4 120 -104 3 1585 1524 268 56 46 chr5 131126993 131127493 -21409766 + Lx5 LINE L1 6506 7010 -40 3 1585 404 277 0 0 chr5 131128074 131128175 -21409084 + ID_B1 SINE B4 123 223 -1 3 1585 459 228 0 0 chr5 131128201 131128324 -21408935 + GA-rich Low_complexity Low_complexity 2 124 0 3 1585 204 255 0 0 chr5 131128630 131128681 -21408578 - L2a LINE L2 -31 3395 3345 3 1585 499 181 11 0 chr5 131128939 131129033 -21408226 + B4 SINE B4 119 213 -79 3 1585 714 158 271 6 chr5 131129056 131129222 -21408037 + B3 SINE B2 1 210 -6 3 1585 1156 56 21 0 chr5 131129250 131129394 -21407865 + B1_Mus2 SINE Alu 1 147 0 3 1585 252 0 0 0 chr5 131129464 131129492 -21407767 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1585 1188 139 0 4 chr5 131129989 131130186 -21407073 + ZP3AR Satellite Satellite 1 196 0 3 1585 273 244 46 28 chr5 131130146 131130253 -21407006 + ID2 SINE ID 1 111 -41 3 1585 295 242 68 61 chr5 131130623 131130755 -21406504 + L1M5 LINE L1 5607 5739 -385 3 1585 248 295 0 62 chr5 131130954 131131019 -21406240 - MLT1-int LTR MaLR -384 987 927 3 1585 915 208 55 14 chr5 131130972 131131338 -21405921 - ZP3AR Satellite Satellite -2 381 1 3 1585 296 336 30 8 chr5 131131351 131131483 -21405776 - B1F SINE Alu -8 141 7 3 1585 180 0 0 0 chr5 131131872 131131892 -21405367 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3 1585 568 265 65 47 chr5 131131901 131131977 -21405282 + B4 SINE B4 6 80 -212 3 1585 279 0 0 0 chr5 131131977 131132008 -21405251 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1585 568 265 65 47 chr5 131132008 131132129 -21405130 + B4 SINE B4 81 213 -79 3 1585 297 0 0 0 chr5 131132129 131132162 -21405097 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 3 1585 568 265 65 47 chr5 131132162 131132177 -21405082 + B4 SINE B4 214 223 -69 3 1585 372 241 0 25 chr5 131132204 131132285 -21404974 + B4 SINE B4 214 292 0 3 1585 664 268 12 6 chr5 131132634 131132799 -21404460 + B3A SINE B2 1 166 -32 3 1585 387 0 0 0 chr5 131132799 131132842 -21404417 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 1585 192 111 0 0 chr5 131132874 131132910 -21404349 + (T)n Simple_repeat Simple_repeat 1 36 0 3 1585 381 340 26 13 chr5 131132965 131133117 -21404142 + B4 SINE B4 2 155 -137 3 1585 360 0 0 0 chr5 131133243 131133283 -21403976 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1585 278 248 165 81 chr5 131133442 131133739 -21403520 + ORR1E LTR MaLR 1 324 -50 3 1585 601 282 14 0 chr5 131134410 131134552 -21402707 + RSINE1 SINE B4 3 146 -19 3 1585 1040 239 85 29 chr5 131134892 131135164 -21402095 + B4A SINE B4 6 292 0 3 1585 3113 145 19 30 chr5 131135233 131135766 -21401493 - RLTR11A2 LTR ERVK 0 527 1 3 1585 8233 51 3 2 chr5 131135857 131137163 -21400096 - L1Md_F2 LINE L1 -14 6568 5275 3 1585 704 224 124 0 chr5 131137803 131137964 -21399295 - B3A SINE B2 -15 183 3 3 1585 297 0 0 0 chr5 131137983 131138016 -21399243 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 1585 390 21 0 0 chr5 131138016 131138062 -21399197 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1585 440 328 78 31 chr5 131138133 131138391 -21398868 - B4A SINE B4 -18 274 5 3 1585 901 209 189 168 chr5 131138882 131139405 -21397854 - RMER4B LTR ERVK -6 579 46 3 1585 2665 161 69 21 chr5 131139405 131139503 -21397756 - RLTR20B2 LTR ERVK 0 560 453 3 1585 342 0 0 0 chr5 131139503 131139541 -21397718 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1585 2665 161 69 21 chr5 131139541 131139976 -21397283 - RLTR20B2 LTR ERVK -108 452 2 3 1585 1830 143 48 3 chr5 131139976 131140313 -21396946 - MYSERV16_I-int LTR ERVK 0 2326 1975 3 1585 915 157 20 44 chr5 131140293 131140497 -21396762 - MYSERV16_I-int LTR ERVK -2157 169 5 3 1585 329 252 0 64 chr5 131140554 131140664 -21396595 - MYSERV16_I-int LTR ERVK -1629 1213 1111 3 1585 493 229 16 44 chr5 131140961 131141144 -21396115 + CT-rich Low_complexity Low_complexity 1 178 0 4 1585 584 277 164 8 chr5 131142001 131142245 -21395014 - RMER15 LTR ERVL -14 561 280 4 1585 216 103 0 25 chr5 131142371 131142411 -21394848 + (CAAAAA)n Simple_repeat Simple_repeat 1 39 0 4 1585 628 281 15 30 chr5 131142592 131142794 -21394465 - RMER15 LTR ERVL -17 558 360 4 1585 241 234 0 0 chr5 131143707 131143754 -21393505 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1585 689 299 42 5 chr5 131143837 131144052 -21393207 + ID_B1 SINE B4 2 224 0 4 1585 512 250 22 7 chr5 131144116 131144253 -21393006 + B1F SINE Alu 9 147 -2 4 1585 520 262 28 38 chr5 131144262 131144446 -21392813 + ZP3AR Satellite Satellite 1 182 -1 4 1585 1271 202 134 3 chr5 131144454 131144782 -21392477 - MTD LTR MaLR -8 411 41 4 1585 1461 89 0 6 chr5 131144847 131145176 -21392083 + ZP3AR Satellite Satellite 1 327 0 4 1585 351 221 52 17 chr5 131145135 131145250 -21392009 + BC1_Mm scRNA scRNA 1 119 -33 4 1585 1084 96 124 87 chr5 131146012 131146230 -21391029 - URR1A DNA MER1_type 0 226 1 4 1585 234 231 25 25 chr5 131146514 131146594 -21390665 + GA-rich Low_complexity Low_complexity 1 80 0 4 1585 225 65 0 0 chr5 131146605 131146636 -21390623 + (TG)n Simple_repeat Simple_repeat 2 32 0 4 1585 617 208 0 70 chr5 131147040 131147169 -21390090 + PB1D7 SINE Alu 1 120 0 4 1585 519 277 111 102 chr5 131147383 131147725 -21389534 - ORR1E LTR MaLR -7 352 8 4 1585 658 287 0 6 chr5 131148229 131148397 -21388862 - B4 SINE B4 -43 249 83 4 1585 396 187 0 13 chr5 131148458 131148534 -21388725 - B4 SINE B4 -216 76 2 4 1585 566 259 52 30 chr5 131149099 131149343 -21387916 - MLT1F LTR MaLR -72 488 252 4 1585 728 278 78 21 chr5 131149444 131149635 -21387624 - B4 SINE B4 -4 288 87 4 1585 1070 248 67 8 chr5 131149816 131150084 -21387175 - B4 SINE B4 -6 286 3 4 1585 651 216 0 0 chr5 131150654 131150816 -21386443 + CT-rich Low_complexity Low_complexity 1 162 0 4 1585 600 260 37 65 chr5 131150816 131150929 -21386330 - B4 SINE B4 -82 210 102 4 1585 1419 148 128 87 chr5 131150929 131151321 -21385938 - RMER17C LTR ERVK 0 410 3 4 1585 600 260 37 65 chr5 131151321 131151421 -21385838 - B4 SINE B4 -191 101 3 4 1585 469 198 52 43 chr5 131151426 131151542 -21385717 - PB1D10 SINE Alu 0 117 1 4 1585 640 284 9 38 chr5 131151779 131151991 -21385268 - RMER15 LTR ERVL -95 480 275 4 1585 323 313 67 22 chr5 131152524 131152658 -21384601 + ID_B1 SINE B4 1 140 -84 4 1585 395 268 16 79 chr5 131152643 131152825 -21384434 - ORR1E LTR MaLR -185 174 1 4 1585 516 265 139 79 chr5 131152906 131153172 -21384087 + B4 SINE B4 3 284 -8 4 1585 261 0 0 0 chr5 131153400 131153429 -21383830 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1585 552 324 20 41 chr5 131153479 131153675 -21383584 + B3A SINE B2 7 198 0 4 1585 427 244 7 28 chr5 131154240 131154533 -21382726 + CT-rich Low_complexity Low_complexity 1 286 0 4 1585 396 0 0 0 chr5 131154557 131154601 -21382658 + (TG)n Simple_repeat Simple_repeat 2 45 0 4 1585 434 183 0 0 chr5 131154603 131154674 -21382585 - ID4 SINE ID -11 72 2 4 1585 426 238 39 23 chr5 131154676 131154805 -21382454 - B1F SINE Alu -9 140 10 4 1585 248 209 52 113 chr5 131155112 131155209 -21382050 + MER5A DNA MER1_type 27 117 -72 4 1585 309 297 43 11 chr5 131155495 131155587 -21381672 - RSINE1 SINE B4 -22 143 49 4 1585 1929 256 129 44 chr5 131155587 131155671 -21381588 - RCHARR1 DNA MER1_type -36 938 854 4 1585 470 182 146 73 chr5 131155671 131155849 -21381410 + B3A SINE B2 2 192 -6 4 1585 1929 256 129 44 chr5 131155849 131156624 -21380635 - RCHARR1 DNA MER1_type -121 853 6 4 1585 2199 153 133 11 chr5 131156700 131157150 -21380109 - RLTR16 LTR ERVK 0 505 1 4 1585 679 296 21 5 chr5 131157167 131157354 -21379905 - B3A SINE B2 -8 190 1 4 1585 859 244 40 92 chr5 131157465 131157768 -21379491 - B4 SINE B4 -4 288 2 4 1585 232 265 46 64 chr5 131157879 131157988 -21379271 + MER57C2 LTR ERV1 203 309 -125 4 1585 404 171 153 57 chr5 131158077 131158135 -21379124 + RCHARR1 DNA MER1_type 1 62 -912 4 1585 207 0 0 0 chr5 131158135 131158158 -21379101 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 4 1585 404 171 153 57 chr5 131158158 131158223 -21379036 + RCHARR1 DNA MER1_type 63 135 -839 4 1585 2206 121 44 10 chr5 131158305 131158689 -21378570 + RLTR28 LTR ERVL 1 397 -127 4 1585 335 259 12 12 chr5 131158854 131158936 -21378323 - ID4_ SINE ID -1 82 1 4 1585 571 273 86 19 chr5 131158948 131159157 -21378102 - ID_B1 SINE B4 0 224 2 4 1585 678 91 0 0 chr5 131159526 131159625 -21377634 + (TG)n Simple_repeat Simple_repeat 1 99 0 4 1585 704 258 0 37 chr5 131159932 131160093 -21377166 + RSINE1 SINE B4 3 157 -8 4 1585 520 253 9 24 chr5 131160172 131160314 -21376945 + B3A SINE B2 24 160 -35 4 1585 336 24 0 0 chr5 131160314 131160355 -21376904 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1585 226 285 64 117 chr5 131160355 131160383 -21376876 + B2_Mm2 SINE B2 161 185 -10 4 1585 364 273 115 8 chr5 131160817 131160939 -21376320 - RSINE1 SINE B4 -28 137 3 4 1585 356 230 0 48 chr5 131160997 131161102 -21376157 - PB1D10 SINE Alu -6 111 12 4 1585 4600 78 13 7 chr5 131161102 131161699 -21375560 - MT2B LTR ERVL 0 601 1 4 1585 303 28 0 0 chr5 131161823 131161859 -21375400 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1585 858 244 24 5 chr5 131162153 131162363 -21374896 + ID_B1 SINE B4 3 216 -8 4 1585 433 209 9 79 chr5 131162717 131162831 -21374428 + PB1D10 SINE Alu 11 116 -1 4 1585 207 253 33 0 chr5 131162838 131162929 -21374330 + A-rich Low_complexity Low_complexity 1 94 0 4 1585 241 288 0 0 chr5 131162938 131162997 -21374262 + G-rich Low_complexity Low_complexity 3 61 0 4 1585 339 25 0 0 chr5 131163001 131163041 -21374218 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 4 1585 691 123 16 0 chr5 131163286 131163408 -21373851 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 4 1585 289 232 94 10 chr5 131163482 131163578 -21373681 - MLT1A0 LTR MaLR -5 360 257 4 1585 1003 225 95 15 chr5 131163645 131163907 -21373352 - B4 SINE B4 -8 284 2 4 1585 822 316 101 55 chr5 131164205 131164822 -21372437 - Lx8 LINE L1 0 7473 6829 4 1585 207 176 39 0 chr5 131165308 131165359 -21371900 + T-rich Low_complexity Low_complexity 1 53 0 4 1585 270 0 0 0 chr5 131165368 131165398 -21371861 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1585 226 192 19 37 chr5 131165398 131165442 -21371817 - PB1D10 SINE Alu -10 107 63 4 1585 422 272 96 0 chr5 131165454 131165590 -21371669 - B1F SINE Alu 0 149 1 4 1585 675 198 16 0 chr5 131165615 131165741 -21371518 - B1_Mur2 SINE Alu -20 129 2 4 1585 25 90 0 0 chr5 131166187 131166254 -21371005 + AT_rich Low_complexity Low_complexity 1 67 0 4 1585 553 220 123 25 chr5 131166915 131167078 -21370181 - MTEb LTR MaLR 0 379 201 4 1585 315 335 78 26 chr5 131167079 131167272 -21369987 + Lx8 LINE L1 7201 7403 -70 4 1585 231 290 32 0 chr5 131167294 131167356 -21369903 + B4A SINE B4 225 288 -4 4 1585 1006 252 0 42 chr5 131167472 131167737 -21369522 - B4A SINE B4 -38 254 1 4 1585 384 22 0 0 chr5 131167787 131167832 -21369427 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1585 441 0 0 0 chr5 131167832 131167880 -21369379 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1585 692 272 47 78 chr5 131167911 131168230 -21369029 - L1MD LINE L1 -430 5812 5504 4 1585 213 261 15 30 chr5 131168230 131168280 -21368979 + polypyrimidine Low_complexity Low_complexity 18 67 0 4 1585 803 290 0 0 chr5 131168280 131168463 -21368796 - B3A SINE B2 -15 183 1 4 1585 213 261 15 30 chr5 131168463 131168479 -21368780 + polypyrimidine Low_complexity Low_complexity 2 17 0 4 1585 384 257 69 62 chr5 131168647 131168792 -21368467 + MTEa LTR MaLR 1 146 -233 4 1585 2405 80 6 58 chr5 131169259 131169603 -21367656 - ORR1A2 LTR MaLR 0 327 2 4 1585 278 351 37 71 chr5 131169622 131169919 -21367340 - MTEa LTR MaLR -16 363 77 4 1585 407 271 125 38 chr5 131169934 131170118 -21367141 - B3 SINE B2 -13 203 4 4 1585 707 231 98 44 chr5 131170162 131170366 -21366893 - B3 SINE B2 -1 215 1 4 1585 998 295 75 44 chr5 131170379 131171053 -21366206 - L1MD LINE L1 -1154 4992 4283 4 1585 414 0 0 0 chr5 131171177 131171223 -21366036 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1585 851 271 80 61 chr5 131171227 131171407 -21365852 - B4 SINE B4 -17 275 89 4 1585 261 0 0 0 chr5 131171407 131171436 -21365823 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4 1585 851 271 80 61 chr5 131171436 131171518 -21365741 - B4 SINE B4 -204 88 8 4 1585 441 250 50 0 chr5 131171681 131171821 -21365438 - L1MA7 LINE L1 -78 6213 6067 4 1585 294 95 0 0 chr5 131171878 131171920 -21365339 + (TATG)n Simple_repeat Simple_repeat 3 44 0 4 1585 793 291 54 22 chr5 131171922 131172199 -21365060 - B4A SINE B4 -2 290 5 4 1585 23 33 0 0 chr5 131172203 131172233 -21365026 + AT_rich Low_complexity Low_complexity 1 30 0 4 1585 422 230 0 16 chr5 131172323 131172451 -21364808 + CT-rich Low_complexity Low_complexity 4 129 0 4 1585 1023 156 0 0 chr5 131172472 131172651 -21364608 + CT-rich Low_complexity Low_complexity 2 180 0 4 1585 564 311 33 52 chr5 131172663 131172992 -21364267 - L1MD LINE L1 -2505 3641 3319 4 1585 287 164 16 0 chr5 131173460 131173521 -21363738 + CT-rich Low_complexity Low_complexity 3 64 0 4 1585 395 194 15 0 chr5 131173533 131173600 -21363659 - ID4_ SINE ID -11 72 5 4 1585 498 189 0 0 chr5 131173608 131173714 -21363545 + (CATA)n Simple_repeat Simple_repeat 2 107 0 4 1585 340 237 40 0 chr5 131173969 131174045 -21363214 - ID4 SINE ID 0 83 5 4 1585 198 167 0 0 chr5 131174053 131174089 -21363170 + (CATA)n Simple_repeat Simple_repeat 2 37 0 4 1585 822 273 126 19 chr5 131174401 131174774 -21362485 + MTE2a LTR MaLR 1 419 0 4 1585 231 36 0 0 chr5 131175682 131175710 -21361549 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1585 291 154 0 0 chr5 131175710 131175775 -21361484 + (CAGA)n Simple_repeat Simple_repeat 2 66 0 5 1585 458 325 18 41 chr5 131175788 131175958 -21361301 - B4 SINE B4 -4 288 123 5 1585 478 275 17 93 chr5 131175950 131176151 -21361108 - B4 SINE B4 -18 206 23 5 1585 454 279 125 0 chr5 131176157 131176293 -21360966 - MTE2a LTR MaLR 0 379 227 5 1585 526 213 33 0 chr5 131176659 131176781 -21360478 - B1F SINE Alu -23 126 1 5 1585 186 289 132 0 chr5 131176811 131176925 -21360334 + MIR SINE MIR 14 142 -120 5 1585 261 0 0 0 chr5 131176992 131177021 -21360238 + (CA)n Simple_repeat Simple_repeat 2 30 0 5 1585 784 313 53 15 chr5 131177053 131177319 -21359940 + B4A SINE B4 13 288 -4 5 1585 263 215 0 25 chr5 131177352 131177433 -21359826 + GA-rich Low_complexity Low_complexity 5 83 0 5 1585 462 202 131 8 chr5 131177440 131177570 -21359689 + B4 SINE B4 83 228 -64 5 1585 356 0 0 22 chr5 131177581 131177626 -21359633 + (TAA)n Simple_repeat Simple_repeat 2 45 0 5 1585 313 323 76 0 chr5 131178633 131178791 -21358468 + B3A SINE B2 1 170 -28 5 1585 460 239 18 9 chr5 131178954 131179068 -21358191 - B3A SINE B2 -37 161 47 5 1585 558 276 106 0 chr5 131179223 131179440 -21357819 - MER2 DNA MER2_type -14 331 92 5 1585 388 167 39 0 chr5 131179452 131179530 -21357729 - B1F1 SINE Alu -2 147 67 5 1585 389 317 24 8 chr5 131179557 131179681 -21357578 - B1F SINE Alu -23 126 1 5 1585 239 339 8 43 chr5 131179680 131179797 -21357462 - PB1D10 SINE Alu 0 117 5 5 1585 460 260 152 25 chr5 131180092 131180289 -21356970 + ID_B1 SINE B4 2 223 -1 5 1585 254 135 0 37 chr5 131180339 131180393 -21356866 + CT-rich Low_complexity Low_complexity 3 54 0 5 1585 289 316 21 0 chr5 131180429 131180524 -21356735 - PB1D7 SINE Alu -21 99 3 5 1585 232 309 0 85 chr5 131180430 131180536 -21356723 - MT2B LTR ERVL -350 251 155 5 1585 417 54 0 0 chr5 131180728 131180784 -21356475 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1585 360 0 0 0 chr5 131181390 131181430 -21355829 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1585 192 125 0 0 chr5 131181613 131181645 -21355614 + (TCC)n Simple_repeat Simple_repeat 2 33 0 5 1585 428 258 8 9 chr5 131181656 131181770 -21355489 - PB1D10 SINE Alu -2 115 1 5 1585 303 216 108 0 chr5 131181948 131182029 -21355230 + ZP3AR Satellite Satellite 1 89 -78 5 1585 241 293 26 13 chr5 131181991 131182067 -21355192 + ID SINE ID 1 77 -147 5 1585 324 0 0 0 chr5 131182074 131182110 -21355149 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1585 475 248 0 17 chr5 131182754 131182869 -21354390 + B3A SINE B2 6 118 -80 5 1585 342 274 39 0 chr5 131182927 131183029 -21354230 - LTR40b LTR ERVL -4 458 353 5 1585 577 182 124 0 chr5 131183132 131183269 -21353990 - MTEa LTR MaLR -78 301 148 5 1585 189 0 0 0 chr5 131183317 131183338 -21353921 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5 1585 770 282 86 35 chr5 131183357 131183697 -21353562 - MTE2a LTR MaLR -22 397 55 5 1585 488 270 95 59 chr5 131183820 131183989 -21353270 - B4A SINE B4 -116 176 2 5 1585 38 39 0 0 chr5 131184015 131184067 -21353192 + AT_rich Low_complexity Low_complexity 1 52 0 5 1585 408 232 12 0 chr5 131184928 131185010 -21352249 - ID4_ SINE ID 0 83 1 5 1585 543 112 60 20 chr5 131185010 131185110 -21352149 - ZP3AR Satellite Satellite -64 148 45 5 1585 534 43 0 0 chr5 131185599 131185668 -21351591 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1585 661 293 12 0 chr5 131185678 131185845 -21351414 - B3A SINE B2 -23 175 7 5 1585 636 241 151 14 chr5 131185989 131186385 -21350874 - RMER15 LTR ERVL 0 575 27 5 1585 230 234 15 45 chr5 131186480 131186547 -21350712 - RMER15 LTR ERVL -510 65 1 5 1585 180 0 0 0 chr5 131186647 131186667 -21350592 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5 1585 373 264 142 0 chr5 131186667 131186773 -21350486 - RSINE1 SINE B4 -43 122 2 5 1585 808 257 18 51 chr5 131186802 131187019 -21350240 + B4 SINE B4 4 213 -79 5 1585 619 285 26 16 chr5 131187027 131187216 -21350043 + MTD LTR MaLR 10 200 -219 5 1585 447 180 20 10 chr5 131187215 131187316 -21349943 + PB1D9 SINE Alu 19 120 0 5 1585 285 98 0 0 chr5 131187323 131187364 -21349895 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 5 1585 351 252 54 23 chr5 131187403 131187547 -21349712 + MTD LTR MaLR 240 397 -22 5 1585 414 169 42 0 chr5 131187711 131187782 -21349477 + (TCTCTG)n Simple_repeat Simple_repeat 4 77 0 5 1585 294 95 0 0 chr5 131187782 131187824 -21349435 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 5 1585 267 366 0 0 chr5 131188200 131188282 -21348977 - B4 SINE B4 -4 288 207 5 1585 2037 130 22 78 chr5 131188288 131188688 -21348571 + ORR1B1 LTR MaLR 17 394 0 5 1585 792 293 28 19 chr5 131188688 131188893 -21348366 - B4 SINE B4 -84 208 2 5 1585 185 331 100 38 chr5 131189093 131189253 -21348006 + MIRb SINE MIR 93 262 -6 5 1585 387 0 0 0 chr5 131189382 131189425 -21347834 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1585 438 278 0 0 chr5 131189459 131189639 -21347620 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1585 456 331 28 119 chr5 131189639 131189958 -21347301 - B4A SINE B4 0 292 3 5 1585 784 208 47 26 chr5 131190167 131190360 -21346899 - B3A SINE B2 0 198 2 5 1585 741 268 45 18 chr5 131190466 131190686 -21346573 + B4A SINE B4 5 230 -62 5 1585 619 286 12 12 chr5 131190686 131190849 -21346410 + RSINE1 SINE B4 3 165 0 5 1585 233 299 0 43 chr5 131190936 131191006 -21346253 + B4A SINE B4 218 284 -8 5 1585 508 179 8 8 chr5 131191020 131191138 -21346121 + (CA)n Simple_repeat Simple_repeat 2 119 0 5 1585 625 292 30 6 chr5 131191793 131191962 -21345297 + B3A SINE B2 1 173 -25 5 1585 1010 135 6 0 chr5 131191968 131192146 -21345113 + (CA)n Simple_repeat Simple_repeat 2 180 0 5 1585 324 227 0 0 chr5 131192182 131192270 -21344989 + (CA)n Simple_repeat Simple_repeat 1 88 0 5 1585 237 231 0 37 chr5 131192291 131192345 -21344914 + (CATA)n Simple_repeat Simple_repeat 3 54 0 5 1585 816 318 38 28 chr5 131192407 131192727 -21344532 + MTEa LTR MaLR 52 374 -5 5 1585 596 230 96 26 chr5 131193401 131193557 -21343702 + ID_B1 SINE B4 1 167 -57 5 1585 359 217 127 25 chr5 131193803 131193921 -21343338 + L1M2 LINE L1 4181 4310 -1833 5 1585 520 180 138 15 chr5 131193940 131194070 -21343189 + B3A SINE B2 2 147 -51 5 1585 413 66 16 0 chr5 131194077 131194138 -21343121 + (CATA)n Simple_repeat Simple_repeat 1 62 0 5 1585 285 155 0 0 chr5 131194138 131194196 -21343063 + GA-rich Low_complexity Low_complexity 1 58 0 5 1585 840 258 45 45 chr5 131194386 131194699 -21342560 + ORR1E LTR MaLR 37 349 -10 5 1585 201 180 20 0 chr5 131195184 131195234 -21342025 + (TTG)n Simple_repeat Simple_repeat 2 52 0 5 1585 188 34 0 33 chr5 131195235 131195265 -21341994 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1585 712 282 62 0 chr5 131195265 131195460 -21341799 - ID_B1 SINE B4 -10 214 8 5 1585 282 132 0 0 chr5 131195720 131195773 -21341486 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 5 1585 672 302 9 49 chr5 131196560 131196783 -21340476 - B3A SINE B2 -1 215 2 5 1585 668 304 26 64 chr5 131197165 131197478 -21339781 + MTEa LTR MaLR 1 301 -78 5 1585 446 282 111 56 chr5 131197494 131197764 -21339495 + B4A SINE B4 4 288 -4 5 1585 331 173 0 24 chr5 131197850 131197933 -21339326 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 1585 5776 68 12 10 chr5 131198246 131198360 -21338899 - L1_Mus4 LINE L1 -1 6635 6528 5 1585 3502 28 2 0 chr5 131198360 131198755 -21338504 - MTA_Mm LTR MaLR 0 396 1 5 1585 5776 68 12 10 chr5 131198755 131199408 -21337851 - L1_Mus4 LINE L1 -109 6527 5867 5 1585 402 21 0 0 chr5 131199415 131199462 -21337797 + (TTA)n Simple_repeat Simple_repeat 1 47 0 5 1585 1092 86 0 0 chr5 131199464 131199604 -21337655 - B1_Mus1 SINE Alu -6 142 3 5 1585 617 250 18 30 chr5 131199623 131199788 -21337471 + RSINE1 SINE B4 3 165 0 5 1585 1184 234 71 38 chr5 131200106 131200497 -21336762 - MTD LTR MaLR -14 405 5 5 1585 207 189 210 57 chr5 131200547 131200704 -21336555 + L2 LINE L2 2013 2193 -1226 5 1585 1245 225 73 67 chr5 131201041 131201099 -21336160 - MTEa LTR MaLR -3 376 338 5 1585 1676 26 5 0 chr5 131201099 131201291 -21335968 + B2_Mm1t SINE B2 1 193 0 5 1585 1245 225 73 67 chr5 131201291 131201604 -21335655 - MTEa LTR MaLR -42 337 3 5 1585 182 413 8 0 chr5 131201664 131201785 -21335474 + L2 LINE L2 2945 3066 -353 5 1585 982 208 44 5 chr5 131201802 131202005 -21335254 - B3 SINE B2 -5 211 1 5 1585 189 0 0 0 chr5 131202178 131202199 -21335060 + (T)n Simple_repeat Simple_repeat 1 21 0 5 1586 876 220 71 35 chr5 131203088 131203314 -21333945 + MTE2a LTR MaLR 129 362 -17 5 1586 610 218 44 185 chr5 131204196 131204429 -21332830 + B3 SINE B2 1 193 -2 5 1586 535 234 89 19 chr5 131204469 131204518 -21332741 - ORR1E LTR MaLR -6 373 326 5 1586 447 19 0 0 chr5 131204518 131204570 -21332689 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 5 1586 1183 232 33 62 chr5 131204570 131204874 -21332385 - ORR1E LTR MaLR -64 295 1 5 1586 414 0 0 0 chr5 131205385 131205431 -21331828 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1586 668 270 79 14 chr5 131205440 131205654 -21331605 - B4 SINE B4 -62 230 3 5 1586 396 281 41 16 chr5 131205704 131205827 -21331432 + B1F SINE Alu 9 134 -15 5 1586 216 0 0 0 chr5 131205829 131205853 -21331406 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 5 1586 1108 226 93 21 chr5 131205910 131206270 -21330989 + MTD LTR MaLR 6 404 -15 5 1586 687 297 73 23 chr5 131206708 131207008 -21330251 + ORR1E LTR MaLR 3 317 -42 5 1586 780 226 69 42 chr5 131207027 131207216 -21330043 - B3A SINE B2 -1 197 4 5 1586 409 333 80 0 chr5 131207348 131207486 -21329773 - RSINE1 SINE B4 -6 159 11 5 1586 447 19 0 0 chr5 131208277 131208329 -21328930 + (TG)n Simple_repeat Simple_repeat 2 53 0 6 1586 225 94 0 0 chr5 131208529 131208561 -21328698 + (TCC)n Simple_repeat Simple_repeat 2 33 0 6 1586 348 83 0 0 chr5 131208569 131208617 -21328642 + (TG)n Simple_repeat Simple_repeat 2 49 0 6 1586 185 196 20 0 chr5 131208951 131209002 -21328257 + CT-rich Low_complexity Low_complexity 3 54 0 6 1586 525 325 73 54 chr5 131209078 131209338 -21327921 - B4 SINE B4 -27 265 1 6 1586 360 234 26 0 chr5 131209609 131209686 -21327573 - ID4 SINE ID -4 79 1 6 1586 809 240 5 53 chr5 131209825 131210032 -21327227 - B3A SINE B2 -1 197 1 6 1586 1955 154 0 0 chr5 131210880 131211198 -21326061 + ORR1A3 LTR MaLR 1 318 -8 6 1586 338 247 14 0 chr5 131211437 131211510 -21325749 + PB1D10 SINE Alu 23 96 -21 6 1586 194 246 0 16 chr5 131211512 131211574 -21325685 + GA-rich Low_complexity Low_complexity 4 64 0 6 1586 304 312 38 30 chr5 131212205 131212337 -21324922 + L1MEg LINE L1 425 557 -5685 6 1586 248 374 10 39 chr5 131212390 131212493 -21324766 - ZP3AR Satellite Satellite -78 134 35 6 1586 332 302 8 8 chr5 131212567 131212684 -21324575 - PB1D10 SINE Alu 0 117 1 6 1586 446 225 11 11 chr5 131213106 131213196 -21324063 + PB1D10 SINE Alu 19 108 -9 6 1586 291 28 0 0 chr5 131213199 131213235 -21324024 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 6 1586 326 331 20 7 chr5 131213271 131213420 -21323839 + L1MEg LINE L1 1185 1335 -4907 6 1586 238 327 26 17 chr5 131213508 131213623 -21323636 - RMER15 LTR ERVL -91 484 369 6 1586 280 243 14 0 chr5 131214260 131214330 -21322929 + MTEa LTR MaLR 296 366 -13 6 1586 605 256 6 13 chr5 131214360 131214518 -21322741 + MTE2b LTR MaLR 19 175 -204 6 1586 1229 185 58 0 chr5 131214511 131214754 -21322505 + MTEb LTR MaLR 123 379 0 6 1586 521 300 56 68 chr5 131214760 131215186 -21322073 + L1MEg LINE L1 1336 1756 -4486 6 1586 550 270 65 7 chr5 131215526 131215664 -21321595 + RSINE1 SINE B4 12 157 -8 6 1586 306 0 0 0 chr5 131215681 131215715 -21321544 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1586 328 314 138 41 chr5 131215737 131215983 -21321276 + L1MEg LINE L1 2258 2527 -3619 6 1586 803 274 15 5 chr5 131216031 131216236 -21321023 - B3 SINE B2 0 216 10 6 1586 1160 96 4 4 chr5 131216242 131216483 -21320776 + (TG)n Simple_repeat Simple_repeat 1 241 0 6 1586 331 269 75 31 chr5 131216552 131216713 -21320546 + L1MEg LINE L1 2651 2818 -3328 6 1586 738 272 163 13 chr5 131216775 131217081 -21320178 - ORR1E LTR MaLR -5 354 3 6 1586 263 312 12 12 chr5 131217405 131217486 -21319773 - Lx8 LINE L1 -253 7220 7140 6 1586 403 174 47 35 chr5 131217500 131217634 -21319625 + MTD LTR MaLR 215 386 -33 6 1586 208 0 30 30 chr5 131217649 131217682 -21319577 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 6 1586 225 0 0 0 chr5 131218759 131218784 -21318475 + (CAA)n Simple_repeat Simple_repeat 3 27 0 6 1586 287 221 0 14 chr5 131218792 131218861 -21318398 - MLT1A1 LTR MaLR -5 403 336 6 1586 521 302 79 53 chr5 131219017 131219206 -21318053 + B3A SINE B2 5 198 0 6 1586 322 217 169 0 chr5 131219241 131219324 -21317935 - MTEb LTR MaLR -232 147 51 6 1586 5847 22 1 0 chr5 131219388 131220054 -21317205 - L1Md_A LINE L1 0 6582 5916 6 1586 261 184 0 0 chr5 131220054 131220103 -21317156 - URR1A DNA MER1_type -115 111 63 6 1586 518 0 16 0 chr5 131220130 131220192 -21317067 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1586 714 196 0 45 chr5 131221108 131221263 -21315996 - B1_Mur2 SINE Alu 0 149 2 6 1586 881 280 24 122 chr5 131221263 131221399 -21315860 + MTD LTR MaLR 5 131 -288 6 1586 1445 131 4 26 chr5 131221399 131221627 -21315632 - URR1A DNA MER1_type 0 226 4 6 1586 881 280 24 122 chr5 131221627 131221950 -21315309 + MTD LTR MaLR 132 419 0 6 1586 322 215 32 11 chr5 131221954 131222048 -21315211 + MIR SINE MIR 81 176 -86 6 1586 262 338 0 0 chr5 131222217 131222291 -21314968 - ID4_ SINE ID -9 74 1 6 1586 1032 8 0 0 chr5 131222510 131222627 -21314632 + (CATATA)n Simple_repeat Simple_repeat 3 119 0 6 1586 601 269 53 16 chr5 131222721 131222910 -21314349 - MTE2a LTR MaLR -3 376 181 6 1586 436 212 0 0 chr5 131222908 131222993 -21314266 + B3 SINE B2 132 216 0 6 1586 326 213 277 0 chr5 131223046 131223140 -21314119 + ID_B1 SINE B4 105 224 0 6 1586 792 212 161 0 chr5 131223326 131223519 -21313740 - URR1B DNA MER1_type -1 224 1 6 1586 4469 44 0 0 chr5 131223639 131224165 -21313094 + L1Md_T LINE L1 6057 6582 0 6 1586 357 284 28 0 chr5 131224193 131224302 -21312957 + PB1D9 SINE Alu 1 112 -8 6 1586 230 204 0 0 chr5 131224341 131224390 -21312869 + B4A SINE B4 4 52 -240 6 1586 465 260 98 46 chr5 131224424 131224577 -21312682 + RSINE1 SINE B4 1 161 -4 6 1586 483 331 7 28 chr5 131224667 131224796 -21312463 + B4A SINE B4 152 278 -14 6 1586 691 85 15 23 chr5 131224796 131224929 -21312330 + (CA)n Simple_repeat Simple_repeat 1 132 0 6 1586 483 331 7 28 chr5 131224929 131224942 -21312317 + B4A SINE B4 279 291 -1 6 1586 498 156 34 17 chr5 131224961 131225137 -21312122 + (CA)n Simple_repeat Simple_repeat 1 179 0 6 1586 637 144 34 11 chr5 131225201 131225377 -21311882 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1586 624 256 57 172 chr5 131225423 131225824 -21311435 - MTE2a LTR MaLR -24 355 1 6 1586 1212 233 52 0 chr5 131226463 131226750 -21310509 + MTEb LTR MaLR 1 302 -77 6 1586 207 0 0 0 chr5 131226848 131226871 -21310388 + (TTTC)n Simple_repeat Simple_repeat 3 25 0 6 1586 1039 149 11 0 chr5 131227211 131227385 -21309874 - ZP3AR Satellite Satellite -34 178 3 6 1586 705 304 95 21 chr5 131227381 131227623 -21309636 - B4 SINE B4 -25 267 8 6 1586 452 274 0 19 chr5 131227720 131227824 -21309435 - B1F SINE Alu -47 102 1 6 1586 318 169 34 0 chr5 131228045 131228134 -21309125 + CT-rich Low_complexity Low_complexity 2 93 0 6 1586 309 343 28 9 chr5 131228266 131228372 -21308887 + B1F SINE Alu 2 109 -40 6 1586 233 321 111 75 chr5 131228372 131228404 -21308855 + B4A SINE B4 87 214 -78 6 1586 257 159 23 0 chr5 131228404 131228448 -21308811 + ID4 SINE ID 3 47 -36 6 1586 233 321 111 75 chr5 131228448 131228465 -21308794 + B4A SINE B4 215 292 0 6 1586 420 257 0 0 chr5 131228469 131228740 -21308519 + (CA)n Simple_repeat Simple_repeat 1 271 0 6 1586 450 265 0 0 chr5 131228757 131229062 -21308197 + (CA)n Simple_repeat Simple_repeat 1 305 0 6 1586 281 286 6 0 chr5 131229079 131229254 -21308005 + (CA)n Simple_repeat Simple_repeat 1 176 0 6 1586 690 13 0 0 chr5 131230293 131230372 -21306887 + (TC)n Simple_repeat Simple_repeat 2 80 0 6 1586 979 270 128 17 chr5 131230831 131231189 -21306070 + MTD LTR MaLR 2 399 -20 6 1586 381 243 0 0 chr5 131231515 131231589 -21305670 - PB1D10 SINE Alu -10 107 34 6 1586 1082 254 96 3 chr5 131231742 131232086 -21305173 + MTEb LTR MaLR 4 379 0 6 1586 861 129 0 0 chr5 131232175 131232314 -21304945 + (TTCC)n Simple_repeat Simple_repeat 4 142 0 6 1586 335 313 0 0 chr5 131232640 131232723 -21304536 + PB1D10 SINE Alu 35 117 0 6 1586 369 0 0 0 chr5 131232832 131232873 -21304386 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1586 710 189 178 5 chr5 131232920 131233111 -21304148 + URR1A DNA MER1_type 3 226 0 6 1586 518 267 8 0 chr5 131233111 131233223 -21304036 - B3A SINE B2 -85 113 1 6 1586 427 279 43 14 chr5 131233231 131233369 -21303890 - B1F SINE Alu 0 149 8 6 1586 300 251 404 0 chr5 131233525 131233671 -21303588 - B3 SINE B2 -11 205 1 6 1586 1566 225 116 11 chr5 131233923 131234301 -21302958 - MTD LTR MaLR -1 418 1 6 1586 3262 236 106 90 chr5 131234301 131235484 -21301775 - MTD-int LTR MaLR 0 1258 58 6 1586 962 208 14 5 chr5 131235477 131235685 -21301574 - MTD LTR MaLR -194 227 18 6 1586 633 255 158 54 chr5 131235704 131236022 -21301237 - MTD LTR MaLR -5 374 40 6 1586 1448 201 54 12 chr5 131236343 131236675 -21300584 - ORR1E LTR MaLR -12 347 2 6 1586 398 212 136 0 chr5 131236855 131236973 -21300286 - B3A SINE B2 -20 178 45 6 1586 887 182 7 0 chr5 131237004 131237152 -21300107 - B1_Mur3 SINE Alu 0 149 1 6 1586 23 54 0 0 chr5 131237157 131237194 -21300065 + AT_rich Low_complexity Low_complexity 1 37 0 6 1586 234 0 0 0 chr5 131237528 131237554 -21299705 + (TC)n Simple_repeat Simple_repeat 2 27 0 6 1586 239 301 34 50 chr5 131237930 131238049 -21299210 - YREP_Mm Unknown Unknown -1514 298 182 6 1586 505 234 0 18 chr5 131237942 131238051 -21299208 + ID_B1 SINE B4 116 222 -2 6 1586 247 297 67 17 chr5 131238122 131238239 -21299020 - ORR1D2 LTR MaLR -186 184 62 6 1586 234 331 52 29 chr5 131238239 131238413 -21298846 - RMER15 LTR ERVL 0 575 398 6 1586 1142 250 31 52 chr5 131239007 131239294 -21297965 + B4A SINE B4 3 283 -9 6 1586 334 322 74 14 chr5 131240095 131240243 -21297016 - ID_B1 SINE B4 -15 209 53 6 1586 567 0 0 0 chr5 131240263 131240326 -21296933 + (TC)n Simple_repeat Simple_repeat 1 63 0 6 1586 697 77 19 0 chr5 131240327 131240431 -21296828 - B1_Mus2 SINE Alu 0 147 42 6 1586 395 0 0 163 chr5 131240434 131240649 -21296610 + (CTCTG)n Simple_repeat Simple_repeat 1 180 0 6 1586 252 133 0 130 chr5 131240651 131240720 -21296539 - B1_Mur4 SINE Alu -90 60 1 6 1586 557 218 16 31 chr5 131240749 131240877 -21296382 + RSINE1 SINE B4 4 129 -36 6 1586 459 113 0 0 chr5 131240885 131240956 -21296303 + (CA)n Simple_repeat Simple_repeat 2 72 0 6 1586 429 201 84 32 chr5 131241294 131241433 -21295826 + B3A SINE B2 1 129 -64 6 1586 239 305 0 17 chr5 131241445 131241505 -21295754 + B3A SINE B2 98 156 -42 6 1586 471 63 0 0 chr5 131241505 131241568 -21295691 + (CA)n Simple_repeat Simple_repeat 2 64 0 6 1586 268 291 91 39 chr5 131242146 131242300 -21294959 - MER20 DNA MER1_type -4 215 54 6 1586 21 82 0 0 chr5 131242480 131242529 -21294730 + AT_rich Low_complexity Low_complexity 1 49 0 6 1586 228 260 34 34 chr5 131242669 131242844 -21294415 + (CATA)n Simple_repeat Simple_repeat 4 178 0 6 1586 1283 170 9 9 chr5 131243098 131243323 -21293936 + URR1B DNA MER1_type 1 225 0 6 1586 2188 133 24 104 chr5 131243439 131243971 -21293288 - RLTR1B LTR ERV1 0 512 2 7 1586 238 315 0 0 chr5 131243978 131244051 -21293208 - Lx8 LINE L1 -334 7139 7067 7 1586 1067 242 38 63 chr5 131244216 131244533 -21292726 + ORR1E LTR MaLR 18 326 -33 7 1586 330 26 0 0 chr5 131244880 131244919 -21292340 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 7 1586 1104 67 0 0 chr5 131244919 131245054 -21292205 - B1_Mm SINE Alu -11 136 2 7 1586 1083 289 138 22 chr5 131245082 131245489 -21291770 + Lx8 LINE L1 6961 7414 -59 7 1586 298 284 9 18 chr5 131245896 131246007 -21291252 - RMER15 LTR ERVL -43 532 423 7 1586 346 38 57 0 chr5 131246952 131247005 -21290254 + L1_Mus2 LINE L1 6511 6566 0 7 1586 842 230 99 137 chr5 131247198 131247632 -21289627 - MTD LTR MaLR -15 404 1 7 1586 459 298 136 6 chr5 131247947 131248116 -21289143 + ID_B1 SINE B4 29 219 -5 7 1586 332 299 63 31 chr5 131248813 131248850 -21288409 + ID_B1 SINE B4 50 213 -11 7 1586 640 197 57 0 chr5 131248850 131248972 -21288287 + B1_Mur2 SINE Alu 10 138 -11 7 1586 351 0 0 0 chr5 131248972 131249011 -21288248 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 7 1586 371 337 10 0 chr5 131249048 131249146 -21288113 - RSINE1 SINE B4 -16 149 51 7 1586 1440 148 16 16 chr5 131249192 131249446 -21287813 - ORR1A3 LTR MaLR -72 254 1 7 1586 454 270 14 191 chr5 131249463 131249683 -21287576 - B4 SINE B4 0 292 112 7 1586 563 285 0 14 chr5 131250178 131250324 -21286935 + RSINE1 SINE B4 3 146 -19 7 1586 895 288 7 77 chr5 131250393 131250679 -21286580 + B4 SINE B4 4 269 -23 7 1586 420 20 0 0 chr5 131250679 131250728 -21286531 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1586 347 236 112 16 chr5 131251200 131251325 -21285934 - MTEb LTR MaLR -241 138 2 7 1586 343 275 106 8 chr5 131251377 131251509 -21285750 - RSINE1 SINE B4 -13 152 8 7 1586 1024 128 0 0 chr5 131251860 131252001 -21285258 - B1_Mus1 SINE Alu -7 141 1 7 1586 1061 253 71 53 chr5 131252068 131252162 -21285097 - MTD LTR MaLR -15 404 303 7 1586 2586 38 6 0 chr5 131252162 131252476 -21284783 - L1Md_F2 LINE L1 0 6582 6267 7 1586 1061 253 71 53 chr5 131252476 131252774 -21284485 - MTD LTR MaLR -117 302 6 7 1586 303 199 0 133 chr5 131252921 131253032 -21284227 - Lx6 LINE L1 -1790 5670 5570 7 1586 577 294 11 46 chr5 131253042 131253302 -21283957 - BGLII_B LTR ERVK -12 429 179 7 1586 320 243 0 0 chr5 131253302 131253372 -21283887 - Lx6 LINE L1 -337 5543 5474 7 1586 482 269 97 0 chr5 131253544 131253678 -21283581 + RSINE1 SINE B4 4 150 -15 7 1586 870 257 111 12 chr5 131253780 131254032 -21283227 + MER2 DNA MER2_type 6 282 -63 7 1586 556 226 113 51 chr5 131254035 131254212 -21283047 + B3A SINE B2 1 188 -10 7 1586 252 294 11 32 chr5 131254391 131254486 -21282773 - MER5A DNA MER1_type -55 134 42 7 1586 266 250 0 111 chr5 131254482 131254563 -21282696 + ID4 SINE ID 10 81 -2 7 1586 438 288 36 0 chr5 131254631 131254742 -21282517 - RSINE1 SINE B4 0 165 51 7 1586 263 253 33 33 chr5 131254789 131254879 -21282380 - RSINE1 SINE B4 -3 162 73 7 1586 1079 246 81 37 chr5 131255158 131255542 -21281717 + MTD LTR MaLR 16 404 -15 7 1586 282 73 0 0 chr5 131255861 131255902 -21281357 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 1586 646 248 14 34 chr5 131255942 131256088 -21281171 + RSINE1 SINE B4 2 144 -21 7 1586 192 143 0 0 chr5 131256209 131256244 -21281015 - L2b LINE L2 -6 3369 3335 7 1586 1355 149 0 0 chr5 131256359 131256567 -21280692 - URR1A DNA MER1_type -18 208 1 7 1586 341 354 56 10 chr5 131256728 131256925 -21280334 - L2 LINE L2 -529 2890 2685 7 1586 905 260 77 31 chr5 131256962 131257248 -21280011 - RMER15 LTR ERVL -4 571 273 7 1586 678 259 183 27 chr5 131257641 131257942 -21279317 - ORR1E LTR MaLR -11 348 1 7 1586 333 0 0 0 chr5 131257993 131258030 -21279229 + (TTA)n Simple_repeat Simple_repeat 2 38 0 7 1586 1518 211 55 9 chr5 131258039 131258364 -21278895 - MTE2b LTR MaLR -39 340 1 7 1586 236 218 36 0 chr5 131258364 131258419 -21278840 - L2 LINE L2 -994 2425 2369 7 1586 487 194 19 28 chr5 131258566 131258672 -21278587 + U6 snRNA snRNA 1 105 -2 7 1586 466 278 85 61 chr5 131258919 131259214 -21278045 - L2 LINE L2 -1403 2016 1715 7 1586 2053 173 11 22 chr5 131259685 131260072 -21277187 - Lx5 LINE L1 -43 7417 6681 7 1586 372 350 106 0 chr5 131260072 131260195 -21277064 - RSINE1 SINE B4 -19 146 11 7 1586 390 275 65 36 chr5 131260494 131260736 -21276523 - Lx8 LINE L1 -1475 5998 5721 7 1586 239 364 14 64 chr5 131261200 131261341 -21275918 + MTE2b LTR MaLR 81 214 -165 7 1586 259 308 0 0 chr5 131262000 131262065 -21275194 + B3A SINE B2 32 96 -102 7 1586 444 245 60 40 chr5 131262056 131262229 -21275030 + MTE2a LTR MaLR 151 344 -35 7 1586 1503 84 44 6 chr5 131262820 131263249 -21274010 + ZP3AR Satellite Satellite 1 445 0 7 1586 333 330 0 29 chr5 131263364 131263467 -21273792 + PB1D10 SINE Alu 1 100 -17 7 1586 207 0 0 0 chr5 131263473 131263496 -21273763 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1586 445 196 30 20 chr5 131264248 131264446 -21272813 + CT-rich Low_complexity Low_complexity 1 199 0 7 1586 212 354 12 0 chr5 131264455 131264537 -21272722 - ID2 SINE ID 0 83 1 7 1586 264 264 58 0 chr5 131264498 131264585 -21272674 - ZP3AR Satellite Satellite -77 135 44 7 1586 430 212 35 0 chr5 131264613 131264698 -21272561 - L1M2 LINE L1 -793 5507 5420 7 1586 752 269 67 15 chr5 131265074 131265331 -21271928 + ORR1E LTR MaLR 64 340 -19 7 1586 381 215 0 0 chr5 131265361 131265454 -21271805 + (TG)n Simple_repeat Simple_repeat 2 94 0 7 1586 691 279 100 30 chr5 131265495 131265765 -21271494 - B4A SINE B4 0 292 4 7 1586 976 287 31 48 chr5 131266145 131266540 -21270719 - MTE2a LTR MaLR -13 406 11 7 1586 262 250 0 0 chr5 131267178 131267230 -21270029 - MTEa LTR MaLR -5 374 323 7 1586 347 250 29 88 chr5 131267214 131267350 -21269909 + MT2B LTR ERVL 151 278 -323 7 1586 689 235 7 0 chr5 131267240 131267376 -21269883 + B1_Mur4 SINE Alu 14 150 0 7 1586 1077 188 8 25 chr5 131267384 131267619 -21269640 - MTEa LTR MaLR -42 337 107 7 1586 329 336 47 57 chr5 131267651 131267826 -21269433 - MT2A LTR ERVL -232 301 5 7 1586 358 312 96 0 chr5 131267826 131267951 -21269308 - MTEa LTR MaLR -238 141 5 7 1586 533 284 60 66 chr5 131268378 131268677 -21268582 - ORR1E LTR MaLR -77 297 1 7 1586 616 229 104 0 chr5 131269425 131269569 -21267690 + B3A SINE B2 2 160 -38 7 1586 333 0 0 0 chr5 131269573 131269610 -21267649 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1586 234 233 0 0 chr5 131269627 131269670 -21267589 + B4A SINE B4 1 43 -249 7 1586 244 191 0 0 chr5 131269674 131269716 -21267543 - B4 SINE B4 -203 89 48 7 1586 963 209 15 0 chr5 131269999 131270205 -21267054 - ORR1D1 LTR MaLR 0 374 166 7 1586 377 153 14 0 chr5 131270208 131270280 -21266979 + GA-rich Low_complexity Low_complexity 2 74 0 7 1586 250 302 0 0 chr5 131270280 131270343 -21266916 - ORR1D1 LTR MaLR -311 63 1 7 1586 324 331 32 24 chr5 131270347 131270471 -21266788 - B4 SINE B4 -166 126 2 7 1586 2263 95 3 58 chr5 131270516 131270862 -21266397 - ORR1A2 LTR MaLR 0 327 1 7 1586 225 139 0 0 chr5 131271377 131271420 -21265839 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 7 1586 266 314 68 10 chr5 131271424 131271527 -21265732 - PB1D10 SINE Alu -8 109 1 7 1586 859 282 121 16 chr5 131272433 131272746 -21264513 - ORR1E LTR MaLR -10 349 4 7 1586 537 234 0 18 chr5 131273284 131273393 -21263866 - RSINE1 SINE B4 0 165 59 7 1586 414 0 0 0 chr5 131273432 131273478 -21263781 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1586 318 262 18 36 chr5 131273567 131273678 -21263581 - PB1D10 SINE Alu -8 109 1 7 1586 440 227 22 22 chr5 131273948 131274038 -21263221 - RSINE1 SINE B4 -39 126 37 7 1586 851 254 17 9 chr5 131274047 131274277 -21262982 - B4A SINE B4 -60 232 1 7 1586 514 224 76 7 chr5 131274653 131274797 -21262462 + Lx5 LINE L1 6896 7049 -1 7 1586 324 70 0 0 chr5 131274798 131274841 -21262418 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 7 1586 1144 76 0 0 chr5 131274913 131275057 -21262202 + B1_Mus1 SINE Alu 5 148 0 7 1586 258 105 0 0 chr5 131275059 131275097 -21262162 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 7 1586 324 0 0 0 chr5 131275161 131275197 -21262062 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1586 372 286 181 0 chr5 131275206 131275339 -21261920 - B3A SINE B2 -41 157 1 7 1586 859 139 20 14 chr5 131275595 131275607 -21261652 - B1_Mus2 SINE Alu 0 147 136 7 1586 369 0 0 0 chr5 131275607 131275648 -21261611 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 7 1586 859 139 20 14 chr5 131275648 131275781 -21261478 - B1_Mus2 SINE Alu -12 135 1 7 1586 868 303 61 30 chr5 131275835 131276196 -21261063 - MTEa LTR MaLR -4 375 4 7 1586 799 284 5 18 chr5 131276657 131276879 -21260380 + B4 SINE B4 1 219 -73 7 1586 21 36 0 0 chr5 131276883 131276911 -21260348 + AT_rich Low_complexity Low_complexity 1 28 0 7 1586 1224 117 0 0 chr5 131277020 131277412 -21259847 + (CA)n Simple_repeat Simple_repeat 1 392 0 7 1586 594 134 24 0 chr5 131277945 131278072 -21259187 + (TG)n Simple_repeat Simple_repeat 1 130 0 7 1586 798 248 77 53 chr5 131278072 131278357 -21258902 - B4A SINE B4 0 292 1 7 1586 217 0 61 0 chr5 131278367 131278400 -21258859 + (TTG)n Simple_repeat Simple_repeat 2 36 0 7 1586 599 200 5 158 chr5 131278427 131278611 -21258648 - RSINE1 SINE B4 -8 157 2 7 1586 432 264 90 9 chr5 131279140 131279251 -21258008 + PB1 SINE Alu 6 125 -2 7 1586 508 263 92 23 chr5 131279251 131279420 -21257839 + ZP3AR Satellite Satellite 1 180 -8 7 1586 221 253 0 11 chr5 131279424 131279512 -21257747 + GA-rich Low_complexity Low_complexity 3 89 0 8 1586 223 267 16 16 chr5 131279541 131279602 -21257657 + PB1D10 SINE Alu 49 109 -8 8 1586 710 234 15 65 chr5 131279865 131280066 -21257193 + B3A SINE B2 2 192 -6 8 1586 913 252 24 0 chr5 131280081 131280291 -21256968 + B3 SINE B2 2 216 0 8 1586 264 122 0 0 chr5 131280512 131280553 -21256706 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1586 1172 112 153 0 chr5 131280764 131280960 -21256299 + URR1A DNA MER1_type 1 226 0 8 1586 568 233 8 62 chr5 131280971 131281099 -21256160 - B4A SINE B4 -171 121 1 8 1586 24 0 0 0 chr5 131281099 131281123 -21256136 + AT_rich Low_complexity Low_complexity 1 24 0 8 1586 216 0 0 0 chr5 131281426 131281450 -21255809 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1586 351 0 0 0 chr5 131281450 131281488 -21255771 + (GA)n Simple_repeat Simple_repeat 1 39 0 8 1586 636 304 14 0 chr5 131281491 131281639 -21255620 - B3A SINE B2 -48 150 1 8 1586 183 42 0 0 chr5 131282058 131282082 -21255177 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 8 1586 1215 34 0 14 chr5 131282083 131282231 -21255028 - B1_Mus1 SINE Alu -1 147 2 8 1586 493 298 25 0 chr5 131282279 131282400 -21254859 + B1F SINE Alu 4 127 -22 8 1586 919 291 38 46 chr5 131282469 131282795 -21254464 - MTE2a LTR MaLR -44 377 50 8 1586 352 352 0 48 chr5 131282985 131283131 -21254128 - B1F SINE Alu -9 140 2 8 1586 424 246 178 50 chr5 131283145 131283325 -21253934 - MTE2a LTR MaLR -6 373 171 8 1586 639 308 0 53 chr5 131283368 131283577 -21253682 + B4A SINE B4 88 285 -7 8 1586 609 110 0 0 chr5 131283623 131283714 -21253545 + (CATA)n Simple_repeat Simple_repeat 4 94 0 8 1586 1401 205 186 0 chr5 131284311 131284628 -21252631 - MTEa LTR MaLR -3 376 1 8 1586 1186 262 80 13 chr5 131284776 131285089 -21252170 + ORR1E LTR MaLR 4 337 -22 8 1586 486 0 0 0 chr5 131285295 131285349 -21251910 + (TA)n Simple_repeat Simple_repeat 2 55 0 8 1586 1024 241 82 43 chr5 131285533 131285837 -21251422 - RMER15 LTR ERVL -12 563 248 8 1586 448 333 14 7 chr5 131286659 131286798 -21250461 + B1F SINE Alu 1 140 -9 8 1586 793 289 55 11 chr5 131286807 131287080 -21250179 + B4 SINE B4 4 288 -4 8 1586 537 68 0 0 chr5 131287084 131287158 -21250101 + (CA)n Simple_repeat Simple_repeat 1 74 0 8 1586 726 247 57 66 chr5 131287221 131287433 -21249826 + B3 SINE B2 2 211 -5 8 1586 264 30 0 0 chr5 131287653 131287686 -21249573 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1586 576 0 0 0 chr5 131287686 131287749 -21249510 + (GA)n Simple_repeat Simple_repeat 2 65 0 8 1586 787 232 0 7 chr5 131287903 131288055 -21249204 + B3A SINE B2 1 151 -47 8 1586 184 200 0 35 chr5 131288061 131288118 -21249141 + GA-rich Low_complexity Low_complexity 5 59 0 8 1586 658 278 8 90 chr5 131288124 131288353 -21248906 + B3A SINE B2 10 216 0 8 1586 333 0 0 0 chr5 131288378 131288415 -21248844 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 8 1586 251 324 28 0 chr5 131288667 131288738 -21248521 + (CGTG)n Simple_repeat Simple_repeat 2 74 0 8 1586 1014 244 10 0 chr5 131289037 131289234 -21248025 + B3 SINE B2 1 199 -17 8 1586 551 290 6 36 chr5 131289283 131289451 -21247808 + RSINE1 SINE B4 3 165 0 8 1586 26 0 0 0 chr5 131289472 131289498 -21247761 + AT_rich Low_complexity Low_complexity 1 26 0 8 1586 777 206 0 40 chr5 131289751 131289903 -21247356 - B1_Mur2 SINE Alu -3 146 1 8 1586 30 0 0 0 chr5 131290252 131290282 -21246977 + AT_rich Low_complexity Low_complexity 1 30 0 8 1586 261 0 0 0 chr5 131290387 131290416 -21246843 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1586 525 294 7 0 chr5 131290438 131290584 -21246675 - Lx9 LINE L1 -206 7438 7292 8 1586 216 0 0 0 chr5 131290592 131290616 -21246643 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 8 1586 2173 255 45 20 chr5 131290619 131291155 -21246104 - Lx9 LINE L1 -530 7114 6566 8 1586 475 309 98 7 chr5 131291168 131291321 -21245938 - ID_B1 SINE B4 -55 169 3 8 1586 226 264 13 77 chr5 131291446 131291524 -21245735 - B4 SINE B4 -91 201 129 8 1586 466 200 171 116 chr5 131291957 131292106 -21245153 + B3A SINE B2 2 163 -32 8 1586 396 59 0 0 chr5 131292106 131292157 -21245102 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1586 339 200 171 116 chr5 131292157 131292188 -21245071 + B2_Mm2 SINE B2 164 192 -3 8 1586 428 0 0 19 chr5 131292455 131292508 -21244751 + (TTTTA)n Simple_repeat Simple_repeat 3 54 0 8 1586 777 203 0 8 chr5 131292508 131292642 -21244617 - B1_Mur3 SINE Alu -12 137 5 8 1586 2196 132 3 9 chr5 131292654 131292982 -21244277 + ORR1A4 LTR MaLR 1 326 -3 8 1586 508 247 132 44 chr5 131292991 131293173 -21244086 - B3A SINE B2 0 198 1 8 1586 1101 282 55 55 chr5 131293725 131293896 -21243363 - MTD LTR MaLR 0 419 241 8 1586 630 39 0 0 chr5 131293896 131293973 -21243286 + (TG)n Simple_repeat Simple_repeat 1 77 0 8 1586 1101 282 55 55 chr5 131293973 131294203 -21243056 - MTD LTR MaLR -179 240 18 8 1586 687 160 18 0 chr5 131294271 131294549 -21242710 + (TG)n Simple_repeat Simple_repeat 1 283 0 8 1586 815 210 0 46 chr5 131294549 131294724 -21242535 - B4 SINE B4 0 292 126 8 1586 365 320 48 24 chr5 131294735 131294860 -21242399 - ID_B1 SINE B4 -87 137 10 8 1586 549 30 0 0 chr5 131295354 131295421 -21241838 + (GA)n Simple_repeat Simple_repeat 2 68 0 8 1586 478 189 11 11 chr5 131295633 131295724 -21241535 - B1_Mus2 SINE Alu -15 132 42 8 1586 250 198 112 56 chr5 131295661 131295768 -21241491 - RLTR25B LTR ERVK -519 509 397 8 1586 270 207 0 33 chr5 131295824 131295884 -21241375 - B1_Mus1 SINE Alu -88 60 3 8 1586 1075 273 91 40 chr5 131296171 131296545 -21240714 - MTD LTR MaLR -18 401 9 8 1586 1228 224 121 12 chr5 131296941 131297280 -21239979 + MTEa LTR MaLR 1 376 -3 8 1586 538 273 95 105 chr5 131297516 131297811 -21239448 + B4A SINE B4 1 292 0 8 1586 540 56 0 0 chr5 131297890 131297962 -21239297 + (TA)n Simple_repeat Simple_repeat 2 73 0 8 1586 672 284 18 14 chr5 131297967 131298146 -21239113 - B3A SINE B2 -32 184 1 8 1586 333 0 0 0 chr5 131298226 131298263 -21238996 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1586 416 302 212 33 chr5 131299102 131299342 -21237917 - B4A SINE B4 -8 284 2 8 1586 371 163 10 39 chr5 131299342 131299444 -21237815 + CT-rich Low_complexity Low_complexity 3 101 0 8 1586 411 107 0 0 chr5 131299492 131299567 -21237692 + (TCTG)n Simple_repeat Simple_repeat 2 76 0 8 1586 323 269 10 88 chr5 131299568 131299670 -21237589 - PB1D10 SINE Alu -11 106 13 8 1586 326 292 158 23 chr5 131299812 131299945 -21237314 + MIRc SINE MIR 18 168 -100 8 1586 752 253 37 5 chr5 131300205 131300392 -21236867 + B3A SINE B2 1 193 -5 8 1586 275 309 0 36 chr5 131300517 131300601 -21236658 - ID4 SINE ID -2 81 1 8 1586 603 263 7 28 chr5 131300663 131300804 -21236455 - RSINE1 SINE B4 -24 141 4 8 1586 287 255 9 105 chr5 131300810 131300915 -21236344 - PB1D10 SINE Alu -2 115 21 8 1586 700 276 18 65 chr5 131301001 131301218 -21236041 - B4A SINE B4 0 292 86 8 1586 626 150 130 17 chr5 131301236 131301351 -21235908 - B1_Mur1 SINE Alu -1 148 21 8 1586 226 191 94 160 chr5 131301269 131301375 -21235884 - MT2B LTR ERVL -337 264 166 8 1586 384 71 0 0 chr5 131301379 131301435 -21235824 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1586 498 17 0 0 chr5 131301435 131301494 -21235765 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1586 737 238 7 0 chr5 131301519 131301662 -21235597 - B3A SINE B2 -52 146 3 8 1586 441 0 0 0 chr5 131301725 131301774 -21235485 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 8 1586 312 305 20 31 chr5 131301912 131302010 -21235249 - MIRb SINE MIR -79 189 93 8 1586 959 222 113 19 chr5 131302119 131302376 -21234883 - B4A SINE B4 -11 281 1 8 1586 468 249 70 75 chr5 131302632 131302665 -21234594 - B2_Mm2 SINE B2 -9 186 155 8 1586 390 74 0 0 chr5 131302665 131302719 -21234540 + (TG)n Simple_repeat Simple_repeat 1 54 0 8 1586 636 227 63 11 chr5 131302719 131302872 -21234387 - B3A SINE B2 -41 154 1 8 1586 918 257 48 103 chr5 131302872 131303271 -21233988 + MTE2a LTR MaLR 3 379 0 8 1586 256 321 81 60 chr5 131303533 131303778 -21233481 + ORR1E LTR MaLR 104 354 -25 8 1586 1584 229 89 0 chr5 131303778 131304115 -21233144 - MTE2b LTR MaLR 0 379 13 8 1586 40 0 0 0 chr5 131304187 131304227 -21233032 + AT_rich Low_complexity Low_complexity 1 40 0 8 1586 263 287 0 31 chr5 131304769 131304966 -21232293 + CT-rich Low_complexity Low_complexity 1 190 0 8 1586 526 253 35 177 chr5 131305504 131305694 -21231565 + B3A SINE B2 2 176 -22 8 1586 546 16 0 0 chr5 131305694 131305757 -21231502 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1586 356 253 35 177 chr5 131305757 131305768 -21231491 + B2_Mm2 SINE B2 163 173 -22 8 1586 423 0 0 0 chr5 131305768 131305815 -21231444 + (GA)n Simple_repeat Simple_repeat 1 47 0 8 1586 356 253 35 177 chr5 131305815 131305838 -21231421 + B2_Mm2 SINE B2 174 195 0 8 1586 418 209 146 6 chr5 131305893 131306017 -21231242 + B3A SINE B2 80 216 0 8 1586 1085 258 59 76 chr5 131306077 131306433 -21230826 - ORR1E LTR MaLR -6 353 4 8 1586 309 257 74 68 chr5 131307289 131307347 -21229912 + L1MB7 LINE L1 5665 5713 -465 8 1586 387 0 0 0 chr5 131307347 131307390 -21229869 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1586 309 257 74 68 chr5 131307390 131307494 -21229765 + L1MB7 LINE L1 5714 5827 -351 8 1586 583 214 101 23 chr5 131307498 131307627 -21229632 + ID_B1 SINE B4 85 223 -1 8 1586 548 293 53 9 chr5 131307668 131307895 -21229364 + L1MB7 LINE L1 5868 6104 -80 8 1586 281 274 0 16 chr5 131308059 131308122 -21229137 + G-rich Low_complexity Low_complexity 1 62 0 8 1586 36 23 0 0 chr5 131308480 131308523 -21228736 + AT_rich Low_complexity Low_complexity 1 43 0 8 1586 940 135 0 13 chr5 131308523 131308673 -21228586 - B1_Mur4 SINE Alu 0 150 3 9 1586 1108 255 25 7 chr5 131308702 131308982 -21228277 - B4A SINE B4 -4 288 4 9 1586 251 243 72 46 chr5 131309002 131309141 -21228118 - MIRc SINE MIR -101 167 29 9 1586 217 350 10 20 chr5 131309192 131309291 -21227968 + PB1D10 SINE Alu 1 98 -19 9 1586 715 218 14 92 chr5 131309273 131309480 -21227779 + B3A SINE B2 8 198 0 9 1586 211 250 69 145 chr5 131309505 131309636 -21227623 + B1F SINE Alu 8 128 -21 9 1586 289 272 12 12 chr5 131309714 131309796 -21227463 + ID4 SINE ID 2 83 0 9 1586 783 164 13 27 chr5 131310196 131310346 -21226913 + B1_Mur3 SINE Alu 1 148 -1 9 1586 558 281 149 61 chr5 131310363 131310570 -21226689 + B4 SINE B4 2 230 -62 9 1586 1669 26 0 0 chr5 131310570 131310759 -21226500 + B2_Mm1a SINE B2 2 190 -3 9 1586 558 281 149 61 chr5 131310759 131310813 -21226446 + B4 SINE B4 231 286 -6 9 1586 203 340 0 0 chr5 131310951 131311004 -21226255 - MIR SINE MIR -108 154 102 9 1586 559 266 24 54 chr5 131311176 131311343 -21225916 - RMER30 DNA MER1_type -39 163 2 9 1586 601 295 92 54 chr5 131311433 131311727 -21225532 - ORR1E LTR MaLR 0 359 55 9 1586 201 39 0 0 chr5 131311770 131311796 -21225463 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1586 249 33 0 0 chr5 131312068 131312098 -21225161 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9 1586 781 238 39 73 chr5 131312105 131312309 -21224950 - ID_B1 SINE B4 -27 197 1 9 1586 1095 8 0 0 chr5 131312316 131312440 -21224819 + (TCC)n Simple_repeat Simple_repeat 3 126 0 9 1586 938 71 95 0 chr5 131312440 131312566 -21224693 - B1_Mus1 SINE Alu -9 139 2 9 1586 244 120 46 46 chr5 131313139 131313226 -21224033 + T-rich Low_complexity Low_complexity 4 90 0 9 1586 1208 113 149 0 chr5 131313244 131313438 -21223821 - URR1B DNA MER1_type -1 224 2 9 1586 661 229 8 0 chr5 131313510 131313641 -21223618 - RSINE1 SINE B4 -30 135 4 9 1586 228 137 0 0 chr5 131313646 131313697 -21223562 + (T)n Simple_repeat Simple_repeat 1 51 0 9 1586 260 243 40 54 chr5 131313705 131313779 -21223480 - PB1D7 SINE Alu -5 115 43 9 1586 715 245 120 77 chr5 131313878 131314152 -21223107 - B4 SINE B4 -6 286 1 9 1586 423 0 0 0 chr5 131314211 131314258 -21223001 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1586 1131 230 87 15 chr5 131314505 131314770 -21222489 + B4 SINE B4 7 290 -2 9 1586 243 88 0 0 chr5 131316044 131316078 -21221181 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1586 443 155 12 0 chr5 131319354 131319438 -21217821 + GA-rich Low_complexity Low_complexity 1 85 0 9 1586 420 235 6 170 chr5 131320560 131320719 -21216540 + B1F SINE Alu 1 133 -16 9 1586 266 259 0 69 chr5 131320681 131320768 -21216491 + ID_B1 SINE B4 144 224 0 9 1586 405 0 0 0 chr5 131321043 131321088 -21216171 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1586 614 226 7 27 chr5 131322252 131322402 -21214857 + B1F1 SINE Alu 1 147 -2 9 1586 189 0 0 0 chr5 131322545 131322566 -21214693 + (G)n Simple_repeat Simple_repeat 1 21 0 9 1586 749 285 39 0 chr5 131323534 131323741 -21213518 + B4A SINE B4 1 215 -77 9 1586 606 173 79 85 chr5 131323741 131323930 -21213329 + RLTR15 LTR ERVK 1 188 -171 9 1586 411 256 59 35 chr5 131323952 131324122 -21213137 + RLTR15 LTR ERVK 161 334 -25 9 1586 572 256 40 0 chr5 131324182 131324307 -21212952 + RSINE1 SINE B4 3 132 -33 9 1586 369 0 0 0 chr5 131324326 131324367 -21212892 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1586 337 246 59 128 chr5 131324587 131324816 -21212443 - MTEb LTR MaLR 0 379 157 9 1586 441 278 109 36 chr5 131324858 131324996 -21212263 - ID_B1 SINE B4 -1 223 76 9 1586 499 264 67 71 chr5 131325000 131325224 -21212035 - ID_B1 SINE B4 -1 223 1 9 1586 282 73 0 0 chr5 131325822 131325863 -21211396 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1586 453 292 153 47 chr5 131325874 131326129 -21211130 - B4A SINE B4 -9 283 2 9 1586 257 300 78 0 chr5 131326379 131326469 -21210790 + B1F SINE Alu 42 138 -11 9 1586 234 0 0 0 chr5 131327001 131327027 -21210232 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1586 1224 54 0 0 chr5 131327049 131327196 -21210063 + B1_Mus1 SINE Alu 1 147 -1 9 1586 233 145 16 0 chr5 131327197 131327259 -21210000 + A-rich Low_complexity Low_complexity 4 66 0 9 1586 773 237 67 0 chr5 131327480 131327674 -21209585 + ID_B1 SINE B4 15 221 -3 9 1586 547 298 53 0 chr5 131327679 131327810 -21209449 + RSINE1 SINE B4 4 141 -24 9 1586 202 270 0 45 chr5 131327999 131328065 -21209194 + G-rich Low_complexity Low_complexity 2 64 0 9 1586 345 247 66 110 chr5 131328309 131328491 -21208768 + MER5B DNA MER1_type 1 174 -4 9 1586 24 0 0 0 chr5 131328546 131328570 -21208689 + AT_rich Low_complexity Low_complexity 1 24 0 9 1586 531 193 9 18 chr5 131328823 131328934 -21208325 - PB1D10 SINE Alu -6 111 2 9 1586 288 246 0 30 chr5 131329013 131329080 -21208179 - ID4_ SINE ID -18 65 1 9 1586 276 100 0 0 chr5 131329901 131329941 -21207318 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 9 1586 824 114 145 0 chr5 131331327 131331458 -21205801 + B1_Mur4 SINE Alu 1 150 0 9 1586 575 117 0 11 chr5 131331459 131331554 -21205705 + (GAGAA)n Simple_repeat Simple_repeat 2 95 0 9 1586 332 165 0 11 chr5 131331690 131331782 -21205477 + (CAGA)n Simple_repeat Simple_repeat 2 92 0 9 1586 218 217 22 0 chr5 131331782 131331828 -21205431 + GA-rich Low_complexity Low_complexity 4 50 0 9 1586 503 220 92 0 chr5 131331829 131331938 -21205321 + PB1D7 SINE Alu 1 119 -1 9 1586 318 123 0 0 chr5 131331956 131332013 -21205246 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1586 315 0 0 0 chr5 131332013 131332047 -21205212 + (TA)n Simple_repeat Simple_repeat 2 36 0 9 1586 234 242 0 0 chr5 131332205 131332271 -21204988 + (TA)n Simple_repeat Simple_repeat 2 67 0 9 1586 513 306 51 32 chr5 131332502 131332718 -21204541 + L1MA5A LINE L1 5712 5931 -366 9 1586 850 265 5 5 chr5 131332748 131332953 -21204306 + B4A SINE B4 2 206 -86 9 1586 2286 153 103 10 chr5 131333002 131333410 -21203849 - RLTR41 LTR ERV1 0 446 1 9 1586 255 275 27 68 chr5 131333430 131333504 -21203755 + LTR16C LTR ERVL 420 538 0 9 1586 504 0 0 0 chr5 131334055 131334111 -21203148 + (TG)n Simple_repeat Simple_repeat 2 57 0 9 1587 208 135 0 0 chr5 131334555 131334592 -21202667 + (CCAA)n Simple_repeat Simple_repeat 1 37 0 9 1587 236 312 51 71 chr5 131335326 131335576 -21201683 - ORR1E LTR MaLR -29 350 94 9 1587 492 114 255 9 chr5 131335620 131335726 -21201533 + URR1B DNA MER1_type 88 219 -6 9 1587 180 0 0 0 chr5 131335726 131335746 -21201513 + (C)n Simple_repeat Simple_repeat 1 20 0 9 1587 324 267 11 22 chr5 131335749 131335841 -21201418 - ORR1E LTR MaLR -260 99 9 9 1587 360 329 76 35 chr5 131335886 131336031 -21201228 + RSINE1 SINE B4 15 165 0 9 1587 484 249 96 7 chr5 131336106 131336252 -21201007 - B3A SINE B2 -24 171 8 9 1587 186 43 0 0 chr5 131336329 131336352 -21200907 + (CAT)n Simple_repeat Simple_repeat 2 24 0 9 1587 654 158 13 32 chr5 131336352 131336473 -21200786 - B1_Mur4 SINE Alu -9 141 1 9 1587 746 199 30 45 chr5 131336476 131336676 -21200583 - B3A SINE B2 0 198 2 9 1587 239 337 29 19 chr5 131336765 131336868 -21200391 + Charlie4a DNA MER1_type 398 501 -7 9 1587 826 281 65 29 chr5 131336882 131337097 -21200162 + B4A SINE B4 5 230 -62 9 1587 745 292 45 48 chr5 131337097 131337388 -21199871 + B4A SINE B4 1 290 -2 9 1587 826 281 65 29 chr5 131337388 131337450 -21199809 + B4A SINE B4 231 292 0 9 1587 330 203 27 0 chr5 131337496 131337570 -21199689 + B4A SINE B4 216 291 -1 9 1587 247 206 62 16 chr5 131337763 131337827 -21199432 - RMER5 LTR ERV1 -434 100 34 9 1587 1848 138 94 9 chr5 131337896 131338226 -21199033 + ORR1B1 LTR MaLR 37 394 0 9 1587 273 154 0 71 chr5 131338418 131338488 -21198771 + CT-rich Low_complexity Low_complexity 2 66 0 9 1587 372 197 0 43 chr5 131338563 131338632 -21198627 - ID_B1 SINE B4 0 224 159 9 1587 282 270 26 39 chr5 131338566 131338643 -21198616 - PB1 SINE Alu -2 125 50 9 1587 261 0 0 0 chr5 131338643 131338672 -21198587 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 9 1587 196 211 28 0 chr5 131338732 131338803 -21198456 + CT-rich Low_complexity Low_complexity 2 74 0 9 1587 567 300 90 5 chr5 131339036 131339237 -21198022 + RMER5 LTR ERV1 173 390 -144 9 1587 545 293 6 46 chr5 131339278 131339453 -21197806 - B4 SINE B4 -86 206 39 9 1587 735 137 193 47 chr5 131339454 131339646 -21197613 - MTD LTR MaLR 0 419 200 9 1587 861 251 28 22 chr5 131339665 131339887 -21197372 - B3 SINE B2 -7 209 8 9 1587 749 261 114 16 chr5 131339818 131340063 -21197196 - MTD LTR MaLR -142 277 9 9 1587 21 0 0 0 chr5 131340610 131340631 -21196628 + AT_rich Low_complexity Low_complexity 1 21 0 9 1587 204 125 0 0 chr5 131340701 131340733 -21196526 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 9 1587 554 289 42 0 chr5 131340892 131341034 -21196225 - RSINE1 SINE B4 -16 149 2 9 1587 7970 149 36 18 chr5 131341211 131343637 -21193622 - Lx5 LINE L1 0 7050 4565 9 1587 1626 68 5 14 chr5 131343655 131343877 -21193382 - L1Md_F2 LINE L1 -12 6570 6351 9 1587 596 247 28 112 chr5 131343884 131344098 -21193161 - B3A SINE B2 -2 196 1 9 1587 517 301 75 135 chr5 131344351 131344735 -21192524 - ORR1D2 LTR MaLR -8 362 2 9 1587 348 290 30 82 chr5 131344737 131344872 -21192387 - B1F1 SINE Alu -13 136 9 9 1587 320 303 13 78 chr5 131344743 131344897 -21192362 - ID_B1 SINE B4 -15 209 66 1 1587 2097 185 11 3 chr5 131345090 131345464 -21191795 + MTEb LTR MaLR 3 379 0 1 1587 681 227 38 25 chr5 131345910 131346068 -21191191 - B3A SINE B2 -38 160 1 1 1587 432 198 0 21 chr5 131346225 131346321 -21190938 - B3A SINE B2 -120 96 1 1 1587 32 0 0 0 chr5 131346321 131346353 -21190906 + AT_rich Low_complexity Low_complexity 1 32 0 1 1587 602 264 25 43 chr5 131346415 131346577 -21190682 - B3 SINE B2 -57 159 1 1 1587 448 41 55 0 chr5 131346609 131346682 -21190577 + (TCTG)n Simple_repeat Simple_repeat 2 78 0 1 1587 1016 123 7 0 chr5 131346717 131346863 -21190396 - B1_Mus2 SINE Alu 0 147 1 1 1587 778 180 17 0 chr5 131347425 131347597 -21189662 + CT-rich Low_complexity Low_complexity 3 177 0 1 1587 750 117 0 0 chr5 131347605 131347725 -21189534 + (TCCC)n Simple_repeat Simple_repeat 4 123 0 1 1587 549 252 46 0 chr5 131347747 131347878 -21189381 - B1F1 SINE Alu -8 141 5 1 1587 637 250 0 79 chr5 131348383 131348561 -21188698 - MTEb LTR MaLR -12 367 204 1 1587 510 272 122 122 chr5 131348631 131348861 -21188398 + B4 SINE B4 63 292 0 1 1587 600 188 6 138 chr5 131348904 131349071 -21188188 - MTEb LTR MaLR -210 149 5 1 1587 396 55 0 0 chr5 131349699 131349754 -21187505 + (TCTG)n Simple_repeat Simple_repeat 4 58 0 1 1587 342 0 0 0 chr5 131350142 131350180 -21187079 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1 1587 1280 215 21 126 chr5 131350221 131350594 -21186665 + MTE2a LTR MaLR 3 336 -43 1 1587 252 0 0 0 chr5 131350594 131350622 -21186637 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1587 824 55 9 0 chr5 131351870 131351980 -21185279 + (GGGA)n Simple_repeat Simple_repeat 3 113 0 1 1587 548 241 42 17 chr5 131352628 131352717 -21184542 + RSINE1 SINE B4 41 129 -36 1 1587 183 42 0 0 chr5 131352717 131352741 -21184518 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1587 548 241 42 17 chr5 131352741 131352769 -21184490 + RSINE1 SINE B4 130 161 -4 1 1587 602 257 168 12 chr5 131352774 131352947 -21184312 + B4 SINE B4 30 229 -63 1 1587 660 268 24 0 chr5 131352949 131353113 -21184146 + B3A SINE B2 3 170 -28 1 1587 484 210 18 12 chr5 131353966 131354130 -21183129 + CT-rich Low_complexity Low_complexity 1 165 0 1 1587 370 292 0 5 chr5 131354152 131354241 -21183018 - ID4_ SINE ID -52 100 14 1 1587 256 240 114 51 chr5 131354261 131354340 -21182919 - B1_Mur3 SINE Alu -4 145 62 1 1587 2051 162 79 14 chr5 131354610 131354978 -21182281 + ORR1B1 LTR MaLR 1 392 -2 1 1587 193 311 51 63 chr5 131355519 131355598 -21181661 - MIRm SINE MIR -125 151 74 1 1587 1152 278 80 12 chr5 131355734 131356073 -21181186 + MTE2b LTR MaLR 13 374 -5 1 1587 1361 228 90 21 chr5 131356705 131357081 -21180178 - MTD LTR MaLR 0 419 18 1 1587 2116 125 124 9 chr5 131357087 131357433 -21179826 - ORR1B1 LTR MaLR -8 386 1 1 1587 425 326 38 0 chr5 131357558 131357684 -21179575 + ORR1E LTR MaLR 1 131 -228 1 1587 391 110 315 0 chr5 131357684 131357757 -21179502 + RLTR28 LTR ERVL 1 96 -385 1 1587 358 86 36 24 chr5 131357757 131357840 -21179419 + (TG)n Simple_repeat Simple_repeat 1 84 0 1 1587 1063 108 0 0 chr5 131357840 131357988 -21179271 - B2_Mm2 SINE B2 -47 148 1 1 1587 2461 183 5 2 chr5 131357989 131358421 -21178838 + RLTR28 LTR ERVL 92 524 0 1 1587 353 305 17 17 chr5 131358548 131358668 -21178591 + ORR1E LTR MaLR 259 378 -1 1 1587 639 67 0 0 chr5 131359152 131359241 -21178018 + (TG)n Simple_repeat Simple_repeat 2 90 0 1 1587 522 249 183 26 chr5 131359241 131359635 -21177624 + RMER15 LTR ERVL 4 554 -21 1 1587 664 257 60 42 chr5 131359663 131359979 -21177280 - L1M4 LINE L1 -519 5659 5351 1 1587 1127 42 7 14 chr5 131359981 131360125 -21177134 - B1_Mus1 SINE Alu 0 148 6 1 1587 477 0 0 0 chr5 131360197 131360250 -21177009 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1587 536 257 58 19 chr5 131360274 131360429 -21176830 - RSINE1 SINE B4 -3 162 2 1 1587 251 236 0 14 chr5 131360433 131360506 -21176753 + CT-rich Low_complexity Low_complexity 1 72 0 1 1587 1371 233 99 36 chr5 131360555 131361050 -21176209 - L1M4 LINE L1 -856 5290 4765 1 1587 463 321 126 4 chr5 131361132 131361379 -21175880 - B4A SINE B4 -15 277 1 1 1587 256 314 34 8 chr5 131361390 131361509 -21175750 - L1M4 LINE L1 -1385 4761 4640 1 1587 302 67 22 0 chr5 131361511 131361556 -21175703 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1587 368 308 1 1 chr5 131361639 131361768 -21175491 - L1M4 LINE L1 -1661 4485 4354 1 1587 485 229 68 0 chr5 131361784 131361902 -21175357 - RSINE1 SINE B4 0 165 40 1 1587 462 108 0 0 chr5 131361922 131361996 -21175263 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1587 817 251 121 4 chr5 131362556 131362812 -21174447 - B4 SINE B4 -5 287 2 1 1587 549 0 0 0 chr5 131363337 131363398 -21173861 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1587 786 263 5 38 chr5 131363548 131363734 -21173525 - B3A SINE B2 -16 182 3 1 1587 1016 232 46 60 chr5 131363766 131364114 -21173145 + RLTR15 LTR ERVK 1 343 -16 1 1587 366 91 0 0 chr5 131364415 131364470 -21172789 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1587 323 309 0 0 chr5 131364484 131364552 -21172707 - B4A SINE B4 -6 286 219 1 1587 279 296 35 49 chr5 131364557 131364699 -21172560 - B1F SINE Alu -5 144 5 1 1587 333 109 0 0 chr5 131364752 131364798 -21172461 + L1_Mus1 LINE L1 6176 6221 -346 1 1587 382 270 62 23 chr5 131364798 131364927 -21172332 - B4A SINE B4 -81 211 78 1 1587 3247 56 0 8 chr5 131365027 131365422 -21171837 - L1_Mus1 LINE L1 0 6567 6176 1 1587 264 296 35 49 chr5 131365475 131365617 -21171642 + B1F SINE Alu 5 144 -5 1 1587 633 244 32 43 chr5 131365917 131366105 -21171154 + B2_Mm2 SINE B2 1 186 -9 1 1587 244 257 154 34 chr5 131366246 131366363 -21170896 + MTEa LTR MaLR 246 376 -3 1 1587 385 102 33 17 chr5 131366365 131366425 -21170834 + PB1 SINE Alu 65 125 -2 1 1587 1297 213 58 7 chr5 131366458 131366732 -21170527 + B4 SINE B4 1 288 -4 1 1587 327 25 0 0 chr5 131366786 131366826 -21170433 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1587 1821 154 83 66 chr5 131366912 131367322 -21169937 + Lx3C LINE L1 6548 6964 -12 1 1587 243 88 0 0 chr5 131367322 131367356 -21169903 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1 1587 216 232 143 14 chr5 131367361 131367431 -21169828 + B4 SINE B4 2 80 -212 1 1587 690 220 29 91 chr5 131367376 131367551 -21169708 + B3A SINE B2 35 198 0 1 1587 478 286 42 8 chr5 131368129 131368249 -21169010 + RSINE1 SINE B4 2 125 -40 1 1587 327 25 0 0 chr5 131368270 131368310 -21168949 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1587 227 269 42 31 chr5 131368331 131368427 -21168832 + RMER12 LTR ERVK 731 827 -495 1 1587 474 65 0 0 chr5 131368427 131368489 -21168770 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 1 1587 630 249 9 159 chr5 131368489 131368709 -21168550 + B4 SINE B4 88 274 -18 1 1587 213 39 0 0 chr5 131368713 131368739 -21168520 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1587 389 281 9 41 chr5 131368883 131368991 -21168268 + B3A SINE B2 72 177 -21 1 1587 423 0 0 0 chr5 131368991 131369038 -21168221 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1587 389 325 0 26 chr5 131369038 131369061 -21168198 + B3A SINE B2 178 198 0 1 1587 498 244 168 52 chr5 131369900 131370073 -21167186 - B3A SINE B2 -5 193 1 1 1587 413 226 72 41 chr5 131370106 131370203 -21167056 - PB1D10 SINE Alu -15 102 3 1 1587 241 298 0 0 chr5 131370247 131370304 -21166955 - ID4 SINE ID -2 81 25 1 1587 398 114 14 0 chr5 131370305 131370375 -21166884 + (TG)n Simple_repeat Simple_repeat 1 71 0 1 1587 404 250 208 60 chr5 131370480 131370509 -21166750 - B4A SINE B4 0 292 270 1 1587 225 0 0 0 chr5 131370509 131370534 -21166725 + (ATGTG)n Simple_repeat Simple_repeat 1 25 0 1 1587 345 100 0 0 chr5 131370535 131370585 -21166674 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1587 404 250 208 60 chr5 131370585 131370702 -21166557 - B4A SINE B4 -23 269 122 1 1587 290 175 70 0 chr5 131370702 131370759 -21166500 + MTEa LTR MaLR 319 379 0 1 1587 513 0 0 0 chr5 131370944 131371001 -21166258 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1587 812 280 5 11 chr5 131371708 131371899 -21165360 + B3A SINE B2 7 196 -2 1 1587 28 0 0 0 chr5 131371900 131371928 -21165331 + AT_rich Low_complexity Low_complexity 1 28 0 1 1587 908 209 50 20 chr5 131371932 131372132 -21165127 + B3 SINE B2 1 206 -10 1 1587 558 191 284 82 chr5 131372253 131372436 -21164823 - B4 SINE B4 -70 222 3 1 1587 204 67 0 0 chr5 131372627 131372657 -21164602 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1 1587 210 174 0 21 chr5 131372670 131372717 -21164542 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1587 936 216 108 0 chr5 131372769 131372954 -21164305 + B4 SINE B4 2 206 -86 1 1587 686 145 7 0 chr5 131372962 131373114 -21164145 + CT-rich Low_complexity Low_complexity 2 154 0 1 1587 346 170 0 0 chr5 131373125 131373178 -21164081 + B4 SINE B4 236 288 -4 1 1587 405 296 71 8 chr5 131373238 131373364 -21163895 + B1F SINE Alu 16 149 0 1 1587 471 253 12 7 chr5 131373697 131373817 -21163442 - PB1D10 SINE Alu -21 129 7 1 1587 281 64 0 41 chr5 131373876 131373925 -21163334 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 1 1587 240 228 17 34 chr5 131373930 131373989 -21163270 - RSINE1 SINE B4 -29 136 79 1 1587 708 253 20 26 chr5 131374074 131374269 -21162990 + B3A SINE B2 5 198 0 1 1587 240 35 0 0 chr5 131374382 131374411 -21162848 + (TC)n Simple_repeat Simple_repeat 2 30 0 1 1587 306 0 0 0 chr5 131374414 131374448 -21162811 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1587 1090 106 0 0 chr5 131374454 131374595 -21162664 - B1_Mus1 SINE Alu -6 142 2 1 1587 421 131 0 14 chr5 131374595 131374665 -21162594 + ORR1D1 LTR MaLR 306 374 0 1 1587 440 258 28 12 chr5 131374980 131375132 -21162127 - ID_B1 SINE B4 -8 216 32 1 1587 694 229 13 34 chr5 131375508 131375657 -21161602 - ID_B1 SINE B4 -2 222 77 1 1587 654 92 46 0 chr5 131375701 131375832 -21161427 + (TCTCTG)n Simple_repeat Simple_repeat 2 138 0 1 1587 444 37 0 0 chr5 131376071 131376125 -21161134 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1587 276 250 0 65 chr5 131376127 131376204 -21161055 - ID4 SINE ID -11 72 1 1 1587 1069 274 53 60 chr5 131376716 131377096 -21160163 - MTE2a LTR MaLR -1 378 2 1 1587 976 263 5 0 chr5 131377098 131377303 -21159956 - ID_B1 SINE B4 -17 207 2 1 1587 324 200 0 0 chr5 131377917 131378002 -21159257 + (TG)n Simple_repeat Simple_repeat 1 85 0 1 1587 259 333 78 35 chr5 131378156 131378271 -21158988 - PB1D7 SINE Alu 0 120 1 1 1587 480 280 40 8 chr5 131378271 131378331 -21158928 - B4A SINE B4 -204 88 25 1 1587 302 252 78 39 chr5 131378465 131378568 -21158691 - PB1D10 SINE Alu -9 108 2 1 1587 606 198 9 0 chr5 131378604 131378710 -21158549 - ID_B1 SINE B4 -13 211 105 1 1587 400 294 66 43 chr5 131378784 131378990 -21158269 + MER44A DNA MER2_type 10 226 -113 1 1587 285 247 23 23 chr5 131379128 131379215 -21158044 + GA-rich Low_complexity Low_complexity 2 88 0 1 1587 450 79 0 0 chr5 131379220 131379283 -21157976 + (GGGA)n Simple_repeat Simple_repeat 2 64 0 1 1587 1901 150 160 32 chr5 131379286 131379693 -21157566 + RMER6B LTR ERVK 1 459 -2 1 1587 233 228 20 0 chr5 131379729 131379779 -21157480 + B1_Mur1 SINE Alu 56 139 -10 1 1587 1708 199 68 0 chr5 131380066 131380418 -21156841 + MTEb LTR MaLR 2 377 -2 1 1587 903 229 11 0 chr5 131380571 131380750 -21156509 - B3A SINE B2 -16 182 2 1 1587 226 349 150 8 chr5 131380844 131380971 -21156288 - MIR SINE MIR -2 260 116 1 1587 188 273 62 38 chr5 131380981 131381061 -21156198 + MIRb SINE MIR 176 257 -11 1 1587 648 312 0 18 chr5 131381092 131381255 -21156004 + RSINE1 SINE B4 3 162 -3 1 1587 220 290 75 101 chr5 131381255 131381280 -21155979 + B2_Mm1t SINE B2 2 184 -9 1 1587 466 235 41 41 chr5 131381370 131381519 -21155740 + B1F SINE Alu 1 149 0 1 1587 1137 68 19 0 chr5 131381524 131381685 -21155574 + ZP3AR Satellite Satellite 45 208 -4 1 1587 1342 244 49 32 chr5 131382734 131383102 -21154157 - MTD LTR MaLR -14 405 8 1 1587 1580 230 71 3 chr5 131383102 131383438 -21153821 + MTEa LTR MaLR 1 359 -20 1 1587 737 242 82 117 chr5 131383693 131383950 -21153309 + B4 SINE B4 2 249 -43 1 1587 230 326 10 39 chr5 131384398 131384500 -21152759 + B1F1 SINE Alu 1 99 -50 1 1587 382 208 91 0 chr5 131384524 131384601 -21152658 + ZP3AR Satellite Satellite 41 124 -88 1 1587 224 380 16 8 chr5 131384577 131384651 -21152608 + BC1_Mm scRNA scRNA 6 79 -73 1 1587 207 0 0 0 chr5 131384651 131384674 -21152585 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1 1587 224 380 16 8 chr5 131384674 131384721 -21152538 + BC1_Mm scRNA scRNA 80 127 -25 1 1587 405 244 121 8 chr5 131385751 131385875 -21151384 + RSINE1 SINE B4 3 140 -25 1 1587 306 0 0 0 chr5 131385875 131385909 -21151350 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1587 459 35 0 0 chr5 131386144 131386201 -21151058 + (TG)n Simple_repeat Simple_repeat 1 57 0 1 1587 428 280 93 0 chr5 131386204 131386311 -21150948 - RSINE1 SINE B4 -11 154 38 1 1587 335 247 12 36 chr5 131386467 131386551 -21150708 + MTE2a LTR MaLR 1 82 -297 1 1587 1385 143 9 4 chr5 131386564 131386789 -21150470 + URR1A DNA MER1_type 1 226 0 1 1587 836 299 117 10 chr5 131386799 131387090 -21150169 + MTE2a LTR MaLR 52 373 -6 1 1587 562 270 36 21 chr5 131387112 131387252 -21150007 - B3A SINE B2 -53 145 4 1 1587 327 304 59 81 chr5 131387862 131387894 -21149365 - B2_Mm1t SINE B2 -9 184 153 1 1587 426 20 0 0 chr5 131387894 131387945 -21149314 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1587 705 282 1 2 chr5 131387945 131388098 -21149161 - B3A SINE B2 -41 152 3 1 1587 1200 203 76 0 chr5 131388124 131388360 -21148899 + MTEa LTR MaLR 1 254 -125 1 1587 838 226 37 175 chr5 131388734 131389163 -21148096 - MTE2a LTR MaLR -2 377 8 1 1587 228 216 0 0 chr5 131389569 131389620 -21147639 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1587 726 314 49 59 chr5 131389623 131389686 -21147573 - B4A SINE B4 0 292 229 1 1587 180 0 0 0 chr5 131389686 131389706 -21147553 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1 1587 726 314 49 59 chr5 131389706 131389930 -21147329 - B4A SINE B4 -64 228 10 1 1587 639 221 29 37 chr5 131390071 131390207 -21147052 - RSINE1 SINE B4 -28 137 3 1 1587 655 302 0 0 chr5 131390953 131391115 -21146144 - RSINE1 SINE B4 -2 163 2 1 1587 2419 206 33 13 chr5 131391137 131391232 -21146027 - RLTR20B2 LTR ERVK 0 560 465 1 1587 369 0 0 0 chr5 131391232 131391273 -21145986 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1587 705 43 0 0 chr5 131391273 131391365 -21145894 + (GA)n Simple_repeat Simple_repeat 2 94 0 1 1587 2419 206 33 13 chr5 131391365 131391815 -21145444 - RLTR20B2 LTR ERVK -96 464 6 1 1587 455 212 12 0 chr5 131391814 131391899 -21145360 - PB1D7 SINE Alu -13 107 22 1 1587 495 204 7 90 chr5 131391947 131391963 -21145296 - ID_B1 SINE B4 0 224 92 1 1587 826 124 0 0 chr5 131391963 131392092 -21145167 - B1_Mus2 SINE Alu -8 139 11 1 1587 464 286 39 52 chr5 131392162 131392317 -21144942 + B3A SINE B2 1 153 -45 1 1587 21 0 0 0 chr5 131392326 131392347 -21144912 + AT_rich Low_complexity Low_complexity 1 21 0 1 1587 429 279 0 9 chr5 131393279 131393391 -21143868 + RSINE1 SINE B4 9 119 -46 1 1587 564 102 0 0 chr5 131393391 131393489 -21143770 + (TC)n Simple_repeat Simple_repeat 2 99 0 1 1587 414 114 0 0 chr5 131393489 131393559 -21143700 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1587 237 176 0 50 chr5 131393572 131393632 -21143627 - L1M2 LINE L1 -771 5529 5473 1 1587 396 59 0 0 chr5 131393667 131393718 -21143541 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1587 596 277 57 47 chr5 131393752 131393945 -21143314 - B4 SINE B4 -96 196 2 1 1587 1065 196 9 18 chr5 131394064 131394288 -21142971 + URR1A DNA MER1_type 5 226 0 1 1587 336 244 24 12 chr5 131394399 131394482 -21142777 + MTD LTR MaLR 101 184 -235 1 1587 292 292 123 7 chr5 131394499 131394654 -21142605 + MTD LTR MaLR 207 379 0 1 1587 544 266 23 8 chr5 131394794 131394923 -21142336 + B4A SINE B4 82 212 -80 1 1587 518 240 197 22 chr5 131394953 131395136 -21142123 - MT2A LTR ERVL -171 362 148 1 1587 320 240 115 0 chr5 131395201 131395297 -21141962 - MTD LTR MaLR -312 107 1 1 1587 305 250 52 59 chr5 131395302 131395438 -21141821 + L1M3 LINE L1 5297 5431 -740 1 1587 718 209 15 0 chr5 131395443 131395577 -21141682 + B3 SINE B2 1 136 -80 1 1587 928 228 55 30 chr5 131395584 131395819 -21141440 - B4 SINE B4 -50 242 2 1 1587 56 48 0 0 chr5 131395830 131395914 -21141345 + AT_rich Low_complexity Low_complexity 1 84 0 1 1587 25 0 0 0 chr5 131395922 131395947 -21141312 + AT_rich Low_complexity Low_complexity 1 25 0 1 1587 727 265 16 6 chr5 131395959 131396141 -21141118 - B3A SINE B2 -14 184 1 1 1587 654 49 0 0 chr5 131396216 131396298 -21140961 + (GA)n Simple_repeat Simple_repeat 1 82 0 1 1587 319 299 72 0 chr5 131396802 131396899 -21140360 - B3A SINE B2 -92 106 3 1 1587 197 0 0 67 chr5 131396911 131396941 -21140318 + (TTTTTA)n Simple_repeat Simple_repeat 1 28 0 1 1587 469 165 98 11 chr5 131397055 131397147 -21140112 - MTEa LTR MaLR -31 348 249 1 1587 474 250 92 53 chr5 131397631 131397783 -21139476 - MTEa LTR MaLR -163 216 59 1 1587 209 154 0 37 chr5 131397807 131397861 -21139398 + CT-rich Low_complexity Low_complexity 1 52 0 1 1587 539 275 55 67 chr5 131398001 131398254 -21139005 + B4A SINE B4 27 276 -16 1 1587 325 0 44 0 chr5 131398477 131398522 -21138737 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1587 1509 93 37 14 chr5 131398553 131398771 -21138488 - URR1B DNA MER1_type -2 223 1 1 1587 207 0 0 0 chr5 131399183 131399206 -21138053 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1587 848 228 133 62 chr5 131399689 131399998 -21137261 - MTD LTR MaLR -14 405 86 1 1587 747 182 14 0 chr5 131400614 131400762 -21136497 - URR1A DNA MER1_type 0 226 77 1 1587 242 111 22 0 chr5 131400818 131400863 -21136396 + L2b LINE L2 3304 3349 -26 1 1587 1249 261 89 18 chr5 131400987 131401141 -21136118 - RMER5 LTR ERV1 -21 513 342 1 1587 212 22 43 43 chr5 131401141 131401188 -21136071 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1587 1249 261 89 18 chr5 131401188 131401482 -21135777 - RMER5 LTR ERV1 -193 341 34 1 1587 511 229 123 37 chr5 131401993 131402156 -21135103 + ORR1E LTR MaLR 18 194 -165 1 1587 793 259 46 156 chr5 131402180 131402597 -21134662 + MTE2a LTR MaLR 1 371 -8 1 1587 2231 81 3 6 chr5 131402602 131402924 -21134335 + ORR1A4 LTR MaLR 1 321 -8 1 1587 336 292 9 19 chr5 131402941 131403049 -21134210 + ORR1E LTR MaLR 264 370 -9 1 1587 696 194 15 2 chr5 131403119 131403280 -21133979 + B3A SINE B2 50 215 -1 1 1587 486 298 166 44 chr5 131403376 131403671 -21133588 + MTEa LTR MaLR 49 379 0 1 1587 714 145 0 0 chr5 131404036 131404160 -21133099 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 1 1587 808 280 8 87 chr5 131404370 131404636 -21132623 - B4 SINE B4 0 292 48 1 1587 366 250 9 55 chr5 131404684 131404794 -21132465 - ID_B1 SINE B4 -10 214 110 1 1587 254 313 35 52 chr5 131404806 131404978 -21132281 - MLT1B LTR MaLR -115 275 107 1 1587 1027 162 5 25 chr5 131405148 131405351 -21131908 + URR1A DNA MER1_type 3 201 -25 1 1587 413 211 197 68 chr5 131405353 131405485 -21131774 + B1_Mur4 SINE Alu 2 150 0 1 1587 297 276 184 0 chr5 131405872 131405970 -21131289 + PB1D10 SINE Alu 1 116 -1 1 1587 260 388 0 10 chr5 131406004 131406108 -21131151 + Charlie1 DNA MER1_type 105 207 -2574 1 1587 1022 268 77 32 chr5 131406157 131406558 -21130701 - MTD LTR MaLR 0 419 1 1 1587 5776 186 36 46 chr5 131406827 131407395 -21129864 - RMER12 LTR ERVK 0 1322 769 1 1587 384 59 0 0 chr5 131407395 131407446 -21129813 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 1 1587 5776 186 36 46 chr5 131407446 131408213 -21129046 - RMER12 LTR ERVK -554 768 2 1 1587 356 310 86 8 chr5 131408215 131408332 -21128927 + PB1 SINE Alu 1 126 -1 1 1587 374 269 0 0 chr5 131408452 131408530 -21128729 + ID4_ SINE ID 3 80 -3 1 1587 231 214 0 0 chr5 131408533 131408575 -21128684 + (ATG)n Simple_repeat Simple_repeat 3 44 0 1 1587 372 131 66 0 chr5 131408582 131408643 -21128616 + ID4_ SINE ID 3 67 -16 1 1587 240 246 0 62 chr5 131408677 131408742 -21128517 + ID4 SINE ID 10 70 -13 1 1587 247 325 22 37 chr5 131408868 131409002 -21128257 - MIR SINE MIR -92 170 39 1 1587 401 287 20 0 chr5 131409178 131409279 -21127980 + B4A SINE B4 21 123 -169 1 1587 1336 226 128 8 chr5 131409332 131409698 -21127561 - MTD LTR MaLR 0 419 10 1 1587 669 204 17 32 chr5 131410963 131411317 -21125942 + (TCCA)n Simple_repeat Simple_repeat 1 348 0 1 1587 288 188 0 0 chr5 131411385 131411449 -21125810 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 1 1587 229 329 0 13 chr5 131411451 131411528 -21125731 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 1 1587 21 0 0 0 chr5 131412311 131412332 -21124927 + AT_rich Low_complexity Low_complexity 1 21 0 1 1587 249 185 0 53 chr5 131412433 131412490 -21124769 - MTC LTR MaLR -347 74 21 1 1587 236 177 58 92 chr5 131412864 131412942 -21124317 + MTEa LTR MaLR 263 337 -42 1 1587 638 219 0 0 chr5 131412942 131413065 -21124194 + B1_Mur2 SINE Alu 2 124 -25 1 1587 1726 104 35 97 chr5 131413068 131413410 -21123849 + ORR1A4 LTR MaLR 1 321 -8 1 1587 228 226 163 51 chr5 131413497 131413595 -21123664 - PB1D7 SINE Alu -9 111 3 1 1587 712 262 18 11 chr5 131413773 131413984 -21123275 + B3A SINE B2 10 216 0 1 1587 250 152 0 33 chr5 131414099 131414160 -21123099 + CT-rich Low_complexity Low_complexity 1 59 0 1 1587 333 264 22 0 chr5 131414167 131414258 -21123001 - PB1D10 SINE Alu -8 109 17 1 1587 659 117 18 0 chr5 131414637 131414748 -21122511 + (GGGA)n Simple_repeat Simple_repeat 4 116 0 1 1587 387 193 0 0 chr5 131415740 131415823 -21121436 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1587 267 298 31 47 chr5 131415887 131416014 -21121245 + RMER15 LTR ERVL 440 564 -11 1 1587 1135 281 13 62 chr5 131416092 131416464 -21120795 + ORR1E LTR MaLR 1 354 -5 1 1587 397 258 30 23 chr5 131416998 131417129 -21120130 + B1F SINE Alu 1 132 -17 1 1587 1458 140 4 4 chr5 131417118 131417519 -21119740 + ZP3AR Satellite Satellite 1 400 0 1 1587 589 209 51 63 chr5 131418163 131418321 -21118938 - MTD LTR MaLR -14 405 219 1 1587 287 224 35 0 chr5 131418321 131418379 -21118880 + ERVL-B4-int LTR ERVL 4466 4525 -1189 1 1587 328 289 84 46 chr5 131418404 131418616 -21118643 - MTD LTR MaLR -202 217 18 1 1587 480 275 32 53 chr5 131419164 131419352 -21117907 + RLTR42-int LTR ERVK 1222 1405 -4117 1 1587 306 0 0 0 chr5 131419553 131419587 -21117672 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1587 203 32 0 61 chr5 131419678 131419711 -21117548 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1 1587 204 229 0 0 chr5 131419711 131419759 -21117500 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1 1587 252 308 81 22 chr5 131420980 131421000 -21116259 - B4A SINE B4 -148 144 1 1 1587 501 259 9 0 chr5 131421000 131421116 -21116143 - B3A SINE B2 -81 117 1 1 1587 1234 224 96 6 chr5 131421288 131421620 -21115639 - MTEa LTR MaLR -17 362 1 1 1587 189 107 0 0 chr5 131421736 131421764 -21115495 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1587 1000 282 65 83 chr5 131421838 131422406 -21114853 + RMER13A LTR ERVK 106 663 -197 1 1587 565 209 0 17 chr5 131422439 131422614 -21114645 + (TATG)n Simple_repeat Simple_repeat 1 172 0 1 1587 673 203 0 11 chr5 131422644 131422823 -21114436 + (TATG)n Simple_repeat Simple_repeat 2 178 0 1 1587 315 49 0 0 chr5 131423560 131423601 -21113658 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 1 1587 237 238 52 0 chr5 131423630 131423699 -21113560 - ID4_ SINE ID -4 79 1 1 1587 1186 79 72 6 chr5 131423723 131423889 -21113370 - B2_Mm2 SINE B2 -18 177 1 1 1587 361 235 102 0 chr5 131423913 131424011 -21113248 - PB1 SINE Alu -2 125 18 1 1587 901 263 40 103 chr5 131424055 131424454 -21112805 - MTE2a LTR MaLR -5 374 1 1 1587 377 269 46 9 chr5 131424455 131424564 -21112695 - MTE2a-int LTR MaLR -2 1578 1466 1 1587 300 271 25 25 chr5 131424685 131424806 -21112453 + MER2 DNA MER2_type 130 250 -95 1 1587 595 274 54 147 chr5 131424898 131425305 -21111954 - MTC LTR MaLR -44 377 1 1 1587 240 343 17 128 chr5 131426051 131426168 -21111091 + B4A SINE B4 48 151 -141 1 1587 261 118 0 0 chr5 131426172 131426223 -21111036 + (G)n Simple_repeat Simple_repeat 1 51 0 1 1587 471 242 14 72 chr5 131427124 131427262 -21109997 - B3A SINE B2 -11 187 58 1 1587 864 143 212 0 chr5 131427352 131427541 -21109718 + RMER6A LTR ERVK 109 337 -419 1 1587 578 218 14 33 chr5 131427605 131427742 -21109517 - ORR1E LTR MaLR -229 141 1 1 1587 349 171 25 17 chr5 131428778 131428897 -21108362 + (TG)n Simple_repeat Simple_repeat 1 120 0 1 1587 282 29 0 0 chr5 131428997 131429032 -21108227 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1587 195 42 0 0 chr5 131429075 131429099 -21108160 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1587 423 38 0 0 chr5 131429136 131429189 -21108070 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1587 342 0 0 0 chr5 131429286 131429324 -21107935 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1587 1031 119 33 33 chr5 131429972 131429999 -21107260 - URR1A DNA MER1_type 0 226 203 1 1587 3302 41 5 5 chr5 131429999 131430395 -21106864 - MTA_Mm LTR MaLR 0 396 1 1 1587 1031 119 33 33 chr5 131430395 131430550 -21106709 - URR1A DNA MER1_type -24 202 44 1 1587 532 315 6 23 chr5 131430831 131431003 -21106256 - B4 SINE B4 -2 290 122 1 1587 448 321 92 5 chr5 131431038 131431223 -21106036 + L1M5 LINE L1 5567 5767 -397 1 1587 269 330 0 37 chr5 131431299 131431406 -21105853 + RSINE1 SINE B4 2 104 -61 1 1587 582 212 17 8 chr5 131431489 131431608 -21105651 + PB1D9 SINE Alu 1 120 0 1 1587 249 57 0 0 chr5 131431608 131431643 -21105616 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1587 24 32 0 0 chr5 131432030 131432061 -21105198 + AT_rich Low_complexity Low_complexity 1 31 0 1 1587 1031 276 58 71 chr5 131432565 131433044 -21104215 + RLTR12B LTR ERVK 47 519 -9 1 1587 182 174 42 28 chr5 131433059 131433130 -21104129 + GA-rich Low_complexity Low_complexity 1 72 0 1 1587 393 303 5 58 chr5 131433169 131433286 -21103973 + polypurine Low_complexity Low_complexity 2 114 0 1 1587 1919 128 152 0 chr5 131433286 131433614 -21103645 + ORR1C1 LTR MaLR 1 378 0 1 1587 393 303 5 58 chr5 131433614 131433685 -21103574 + polypurine Low_complexity Low_complexity 115 180 0 1 1587 462 261 269 0 chr5 131433950 131434080 -21103179 + B3A SINE B2 1 165 -33 1 1587 576 42 0 0 chr5 131434083 131434154 -21103105 + (TTAGGG)n Simple_repeat Simple_repeat 1 71 0 1 1587 621 227 8 0 chr5 131434804 131434932 -21102327 + RSINE1 SINE B4 2 130 -35 1 1587 207 0 0 0 chr5 131434954 131434977 -21102282 + (CA)n Simple_repeat Simple_repeat 2 24 0 1 1587 228 242 15 15 chr5 131435148 131435215 -21102044 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1587 230 256 102 23 chr5 131435218 131435306 -21101953 + ORR1E LTR MaLR 6 100 -259 1 1587 515 285 79 7 chr5 131435560 131435712 -21101547 + RSINE1 SINE B4 3 165 0 1 1587 309 209 0 0 chr5 131435720 131435787 -21101472 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1 1587 407 49 33 0 chr5 131435785 131435846 -21101413 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1 1587 263 202 0 12 chr5 131435855 131435935 -21101324 + (CA)n Simple_repeat Simple_repeat 2 80 0 1 1587 636 200 0 0 chr5 131435971 131436136 -21101123 + (CA)n Simple_repeat Simple_repeat 2 166 0 1 1587 1020 76 25 6 chr5 131436608 131436767 -21100492 + (TTTC)n Simple_repeat Simple_repeat 2 163 0 1 1587 470 125 12 0 chr5 131436807 131436887 -21100372 + (TCCC)n Simple_repeat Simple_repeat 3 83 0 1 1587 198 0 0 0 chr5 131436889 131436911 -21100348 + (TTTC)n Simple_repeat Simple_repeat 3 24 0 1 1587 554 340 0 0 chr5 131436913 131437063 -21100196 - RSINE1 SINE B4 -13 152 3 1 1587 284 208 19 19 chr5 131437191 131437299 -21099960 + CT-rich Low_complexity Low_complexity 1 108 0 1 1587 404 290 20 0 chr5 131437303 131437403 -21099856 - PB1D10 SINE Alu -15 102 1 1 1587 1155 194 44 80 chr5 131437617 131438036 -21099223 + RLTR20D LTR ERVK 28 505 0 1 1587 465 335 11 16 chr5 131438039 131438224 -21099035 + B4A SINE B4 105 288 -4 1 1587 211 286 18 0 chr5 131438353 131438409 -21098850 + ID2 SINE ID 22 78 -5 1 1587 269 233 115 10 chr5 131438426 131438530 -21098729 + L1MA9 LINE L1 6117 6231 -81 1 1587 583 274 131 10 chr5 131438910 131439112 -21098147 + B4A SINE B4 8 234 -58 1 1587 1000 225 34 137 chr5 131439112 131439529 -21097730 - MTE2a LTR MaLR 0 379 6 1 1587 1120 189 32 18 chr5 131440056 131440277 -21096982 - URR1A DNA MER1_type -1 225 2 1 1587 1162 206 171 19 chr5 131440598 131440920 -21096339 + MTEb LTR MaLR 2 372 -7 1 1587 311 304 8 118 chr5 131441553 131441680 -21095579 + ID_B1 SINE B4 87 199 -25 1 1587 356 200 0 0 chr5 131441655 131441715 -21095544 + B1F SINE Alu 68 127 -22 1 1587 290 196 0 0 chr5 131441683 131441739 -21095520 + ID_B1 SINE B4 145 200 -24 1 1587 245 185 28 97 chr5 131441715 131441787 -21095472 + B1F SINE Alu 70 136 -13 1 1587 420 20 0 0 chr5 131442381 131442430 -21094829 + (CAGGG)n Simple_repeat Simple_repeat 3 51 0 1 1587 247 245 78 39 chr5 131442549 131442651 -21094608 + MTE2a LTR MaLR 87 192 -167 1 1587 957 244 198 22 chr5 131442776 131443095 -21094164 + MTEb LTR MaLR 5 379 0 1 1587 1181 180 35 13 chr5 131443109 131443231 -21094028 + ZP3AR Satellite Satellite 1 138 -262 1 1587 216 128 0 0 chr5 131443231 131443270 -21093989 + ID2 SINE ID 2 40 -43 1 1587 1181 180 35 13 chr5 131443270 131443468 -21093791 + ZP3AR Satellite Satellite 139 366 -34 1 1587 252 0 0 0 chr5 131443666 131443694 -21093565 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1587 441 0 0 0 chr5 131443694 131443742 -21093517 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1587 1083 152 10 16 chr5 131444527 131444721 -21092538 + MTD LTR MaLR 18 210 -209 1 1587 871 272 14 14 chr5 131444721 131444937 -21092322 + B3 SINE B2 1 216 0 1 1587 434 218 9 0 chr5 131444951 131445061 -21092198 + GA-rich Low_complexity Low_complexity 2 112 0 1 1587 805 230 85 5 chr5 131445085 131445286 -21091973 + MTD LTR MaLR 200 416 -3 1 1587 320 258 0 0 chr5 131445289 131445355 -21091904 - B4A SINE B4 -225 67 2 1 1587 468 51 0 0 chr5 131445821 131445880 -21091379 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1 1587 1289 97 11 0 chr5 131445972 131446148 -21091111 - B2_Mm1t SINE B2 -14 179 2 1 1587 315 232 36 12 chr5 131446326 131446409 -21090850 + MTE2a LTR MaLR 291 375 -4 1 1587 410 353 67 56 chr5 131446511 131446796 -21090463 + B4 SINE B4 1 288 -4 1 1587 1260 92 0 0 chr5 131446830 131447192 -21090067 + (CA)n Simple_repeat Simple_repeat 1 362 0 1 1587 273 321 0 0 chr5 131447823 131447904 -21089355 + (TATG)n Simple_repeat Simple_repeat 2 82 0 1 1587 980 264 41 8 chr5 131447904 131448148 -21089111 - B4 SINE B4 -4 288 37 1 1587 1173 251 14 17 chr5 131448148 131448440 -21088819 + MTD LTR MaLR 1 291 -128 1 1587 384 276 122 0 chr5 131448472 131448595 -21088664 + MTD LTR MaLR 267 404 -15 1 1587 225 171 0 0 chr5 131448606 131448647 -21088612 - B4A SINE B4 -249 43 3 1 1587 603 241 117 0 chr5 131449215 131449377 -21087882 + B3A SINE B2 2 182 -16 1 1587 258 293 25 81 chr5 131449618 131449778 -21087481 + MamGypLTR2c LTR Gypsy 863 1013 -55 1 1587 378 0 0 0 chr5 131449784 131449826 -21087433 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1587 507 17 0 0 chr5 131449826 131449885 -21087374 + (TA)n Simple_repeat Simple_repeat 1 60 0 1 1587 367 223 25 0 chr5 131450069 131450190 -21087069 + GA-rich Low_complexity Low_complexity 1 124 0 1 1587 666 256 0 19 chr5 131450246 131450405 -21086854 + ID_B1 SINE B4 25 180 -44 1 1587 227 333 41 41 chr5 131450308 131450430 -21086829 + B1_Mm SINE Alu 5 126 -21 1 1587 362 312 120 0 chr5 131450502 131450627 -21086632 + B4A SINE B4 1 140 -152 1 1587 460 272 46 1 chr5 131450892 131451043 -21086216 + L1MA10 LINE L1 6186 6319 -15 1 1587 1075 232 65 99 chr5 131451048 131451460 -21085799 - MTD LTR MaLR -14 405 21 1 1587 588 201 205 45 chr5 131451704 131451860 -21085399 + B3A SINE B2 2 182 -16 1 1587 1471 143 9 0 chr5 131452201 131452425 -21084834 + URR1A DNA MER1_type 1 226 0 1 1587 771 276 105 71 chr5 131452428 131452713 -21084546 + RMER5 LTR ERV1 56 348 -186 1 1587 782 215 10 73 chr5 131452713 131452919 -21084340 + B2_Mm2 SINE B2 1 193 -2 1 1587 771 276 105 71 chr5 131452919 131453081 -21084178 + RMER5 LTR ERV1 349 518 -16 1 1587 694 212 18 48 chr5 131453464 131453632 -21083627 + RSINE1 SINE B4 3 165 0 1 1587 21 0 0 0 chr5 131453646 131453667 -21083592 + AT_rich Low_complexity Low_complexity 1 21 0 1 1587 230 276 159 76 chr5 131453679 131453836 -21083423 + L1MEd LINE L1 641 810 -5309 1 1587 524 245 12 90 chr5 131453967 131454133 -21083126 + B3A SINE B2 39 191 -7 1 1587 720 132 9 0 chr5 131454199 131454313 -21082946 + B1_Mur2 SINE Alu 34 148 -1 1 1587 669 212 18 46 chr5 131454533 131454745 -21082514 + B3A SINE B2 1 195 0 1 1587 583 258 46 0 chr5 131454851 131455002 -21082257 - RSINE1 SINE B4 -5 160 3 1 1587 253 254 77 46 chr5 131455102 131455296 -21081963 + L1MEd LINE L1 896 1095 -5024 1 1587 531 0 0 0 chr5 131455915 131455974 -21081285 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1587 1076 246 55 52 chr5 131456004 131456352 -21080907 - ORR1E LTR MaLR -9 350 2 1 1587 226 339 98 0 chr5 131456576 131456688 -21080571 - ORR1E LTR MaLR -217 142 20 1 1587 1716 224 81 18 chr5 131456996 131457442 -21079817 - RMER19C LTR ERVK 0 611 138 1 1587 446 259 109 15 chr5 131457489 131457626 -21079633 + B4A SINE B4 97 246 -46 1 1587 340 283 0 29 chr5 131457630 131457732 -21079527 + GA-rich Low_complexity Low_complexity 2 100 0 1 1587 438 331 7 53 chr5 131457750 131457900 -21079359 + RSINE1 SINE B4 10 152 -13 1 1587 699 306 55 67 chr5 131458334 131458677 -21078582 + MT2A LTR ERVL 1 339 -194 1 1587 325 312 0 24 chr5 131458710 131458792 -21078467 + RSINE1 SINE B4 50 129 -36 1 1587 693 262 58 16 chr5 131459074 131459264 -21077995 + B3A SINE B2 1 198 0 1 1587 234 311 0 26 chr5 131459318 131459394 -21077865 + ID_B1 SINE B4 99 172 -52 1 1587 1390 158 14 0 chr5 131459396 131459617 -21077642 + URR1B DNA MER1_type 1 224 -1 1 1587 231 256 90 100 chr5 131459617 131459638 -21077621 + PB1 SINE Alu 103 116 -11 1 1587 3668 194 43 6 chr5 131460357 131461248 -21076011 - RMER1A Other Other -15 1051 187 1 1587 2378 170 32 5 chr5 131461249 131461657 -21075602 + MTC LTR MaLR 3 421 0 1 1587 614 310 28 73 chr5 131461752 131462069 -21075190 + MTEa LTR MaLR 75 377 -2 1 1587 276 312 0 50 chr5 131462069 131462170 -21075089 + PB1D10 SINE Alu 12 107 -10 1 1587 313 301 54 84 chr5 131462189 131462356 -21074903 + MER2 DNA MER2_type 70 231 -114 1 1587 285 314 56 28 chr5 131462371 131462479 -21074780 - PB1D10 SINE Alu -1 116 6 1 1587 1770 158 49 12 chr5 131462844 131463190 -21074069 + ORR1B2 LTR MaLR 1 359 -8 1 1587 523 237 88 0 chr5 131463876 131463990 -21073269 - RSINE1 SINE B4 -38 127 4 1 1587 342 0 0 0 chr5 131464890 131464928 -21072331 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 198 673 233 203 71 chr5 131465001 131465297 -21071962 + MTD LTR MaLR 85 419 0 1 1588 737 258 18 132 chr5 131465300 131465581 -21071678 + B4 SINE B4 40 288 -4 1 1588 220 316 13 0 chr5 131466209 131466285 -21070974 + B4 SINE B4 1 77 -215 1 1588 892 230 71 167 chr5 131466299 131466737 -21070522 - MTD LTR MaLR -14 405 10 1 1588 542 298 32 46 chr5 131466742 131466960 -21070299 + B4A SINE B4 76 290 -2 1 1588 301 272 84 100 chr5 131467794 131468041 -21069218 + MTD LTR MaLR 1 317 -102 1 1588 1245 148 36 18 chr5 131468311 131468532 -21068727 + URR1A DNA MER1_type 2 226 0 1 1588 284 218 3 3 chr5 131468762 131468831 -21068428 + MTD LTR MaLR 311 405 -14 1 1588 3132 145 21 4 chr5 131468881 131469399 -21067860 - RLTR11A LTR ERVK -1 527 1 1 1588 288 235 28 93 chr5 131469717 131469825 -21067434 + LTR50 LTR ERVL 7 107 -688 1 1588 1164 271 54 12 chr5 131469863 131470219 -21067040 - MTE2b LTR MaLR -8 362 1 1 1588 945 239 71 109 chr5 131470349 131470743 -21066516 - MTE2a LTR MaLR 0 379 1 1 1588 346 273 18 18 chr5 131471414 131471526 -21065733 + L1MA10 LINE L1 6182 6293 -41 1 1588 337 236 114 12 chr5 131471531 131471630 -21065629 - PB1D10 SINE Alu -2 115 13 1 1588 1487 46 1 0 chr5 131471689 131472007 -21065252 + ZP3AR Satellite Satellite 1 318 0 1 1588 285 254 0 0 chr5 131472008 131472071 -21065188 + ID4_ SINE ID 3 65 -18 1 1588 623 285 70 5 chr5 131472384 131472571 -21064688 + B4A SINE B4 7 205 -87 1 1588 248 273 0 24 chr5 131472631 131472800 -21064459 + (CA)n Simple_repeat Simple_repeat 2 166 0 1 1588 429 305 70 7 chr5 131472845 131472987 -21064272 + RSINE1 SINE B4 1 151 -14 1 1588 207 0 0 0 chr5 131473069 131473092 -21064167 + (TTG)n Simple_repeat Simple_repeat 3 25 0 1 1588 261 0 0 0 chr5 131473092 131473121 -21064138 + (TGG)n Simple_repeat Simple_repeat 1 29 0 1 1588 24 67 0 0 chr5 131473474 131473519 -21063740 + AT_rich Low_complexity Low_complexity 1 45 0 1 1588 915 265 124 40 chr5 131474194 131474462 -21062797 + MTD LTR MaLR 36 335 -84 1 1588 1125 151 136 0 chr5 131474462 131474661 -21062598 - URR1A DNA MER1_type 0 226 1 1 1588 915 265 124 40 chr5 131474661 131474746 -21062513 + MTD LTR MaLR 336 419 0 1 1588 252 0 0 0 chr5 131475552 131475580 -21061679 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1588 714 295 51 0 chr5 131475661 131475876 -21061383 + B4A SINE B4 5 230 -62 1 1588 341 250 214 0 chr5 131475876 131475988 -21061271 + B3 SINE B2 1 136 -80 1 1588 387 0 0 0 chr5 131476005 131476048 -21061211 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1588 333 0 0 0 chr5 131476048 131476084 -21061175 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1588 533 257 93 13 chr5 131476416 131476566 -21060693 + B3A SINE B2 1 162 -36 1 1588 246 32 0 0 chr5 131477246 131477277 -21059982 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1588 522 0 0 0 chr5 131477277 131477335 -21059924 + (GA)n Simple_repeat Simple_repeat 1 58 0 1 1588 507 237 17 17 chr5 131477335 131477455 -21059804 - RSINE1 SINE B4 -44 121 2 1 1588 732 284 75 69 chr5 131477819 131478233 -21059026 - MTE2a LTR MaLR 0 419 1 1 1588 942 262 5 0 chr5 131478233 131478441 -21058818 + B4 SINE B4 21 229 -63 1 1588 1150 183 19 5 chr5 131478444 131478653 -21058606 + B3 SINE B2 5 216 0 1 1588 249 98 0 0 chr5 131478750 131478791 -21058468 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1588 220 290 78 78 chr5 131479140 131479256 -21058003 + B1F SINE Alu 34 149 0 1 1588 723 295 19 10 chr5 131479258 131479467 -21057792 + ID_B1 SINE B4 2 212 -12 1 1588 825 271 48 32 chr5 131479555 131479807 -21057452 + MTD LTR MaLR 21 276 -143 1 1588 662 267 2 27 chr5 131479939 131480160 -21057099 + B3A SINE B2 1 216 0 1 1588 583 256 91 27 chr5 131480506 131480812 -21056447 + MTEa LTR MaLR 3 379 0 1 1588 2464 80 0 60 chr5 131481029 131481377 -21055882 + ORR1A2 LTR MaLR 1 327 0 1 1588 238 333 12 0 chr5 131481492 131481576 -21055683 - MER5A DNA MER1_type 0 189 105 1 1588 298 311 33 0 chr5 131481726 131481816 -21055443 + B1F2 SINE Alu 1 93 -56 1 1588 817 271 34 130 chr5 131481847 131482081 -21055178 + B4 SINE B4 1 223 -69 1 1588 800 213 46 41 chr5 131482081 131482277 -21054982 + B3A SINE B2 2 198 0 1 1588 817 271 34 130 chr5 131482277 131482365 -21054894 + B4 SINE B4 224 292 0 1 1588 453 19 0 0 chr5 131482380 131482434 -21054825 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1588 26 64 0 0 chr5 131482846 131482893 -21054366 + AT_rich Low_complexity Low_complexity 1 47 0 1 1588 832 239 18 0 chr5 131482967 131483134 -21054125 - B3A SINE B2 -27 171 2 1 1588 721 253 5 36 chr5 131483605 131483798 -21053461 - B3A SINE B2 -11 187 1 1 1588 325 223 46 12 chr5 131483839 131483936 -21053323 - B3A SINE B2 -29 187 85 1 1588 443 206 33 0 chr5 131484160 131484252 -21053007 + B3A SINE B2 91 185 -13 1 1588 422 233 54 5 chr5 131484294 131484404 -21052855 + B3A SINE B2 2 113 -82 1 1588 241 328 128 38 chr5 131484502 131484768 -21052491 + B4A SINE B4 1 290 -2 1 1588 27 29 0 0 chr5 131484810 131484844 -21052415 + AT_rich Low_complexity Low_complexity 1 34 0 1 1588 1040 222 0 19 chr5 131484851 131485058 -21052201 - B3 SINE B2 -8 208 6 1 1588 291 28 0 0 chr5 131485076 131485112 -21052147 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1588 483 319 7 34 chr5 131485131 131485277 -21051982 - B3A SINE B2 -56 142 1 1 1588 405 0 0 0 chr5 131485377 131485422 -21051837 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1588 644 306 75 45 chr5 131485533 131485841 -21051418 + ORR1E LTR MaLR 32 348 -11 1 1588 441 0 0 0 chr5 131486044 131486093 -21051166 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1588 190 357 124 0 chr5 131486655 131486784 -21050475 + L2b LINE L2 3230 3374 -1 1 1588 662 260 64 90 chr5 131486999 131487075 -21050184 + B4A SINE B4 1 80 -212 1 1588 180 0 0 0 chr5 131487075 131487095 -21050164 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1588 662 268 47 59 chr5 131487095 131487383 -21049876 + B4A SINE B4 7 258 -34 1 1588 263 268 18 0 chr5 131487389 131487445 -21049814 + MTE2b LTR MaLR 253 309 -70 1 1588 23 0 0 0 chr5 131487487 131487510 -21049749 + AT_rich Low_complexity Low_complexity 1 23 0 1 1588 558 222 0 27 chr5 131487558 131487743 -21049516 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1588 309 255 0 0 chr5 131487760 131487858 -21049401 + (CA)n Simple_repeat Simple_repeat 1 98 0 1 1588 352 257 14 0 chr5 131488324 131488398 -21048861 + MTE2b LTR MaLR 238 312 -67 1 1588 710 319 26 6 chr5 131488402 131488714 -21048545 + L1MA4 LINE L1 5609 5926 -374 1 1588 663 88 26 0 chr5 131488745 131488858 -21048401 + (TAGA)n Simple_repeat Simple_repeat 4 119 0 1 1588 1693 174 78 21 chr5 131488992 131489379 -21047880 + MTC LTR MaLR 5 413 -8 1 1588 687 297 10 62 chr5 131489409 131489617 -21047642 + B3A SINE B2 1 197 -1 1 1588 183 139 0 0 chr5 131490803 131490839 -21046420 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1588 279 323 23 16 chr5 131491735 131491864 -21045395 + MTD LTR MaLR 1 130 -289 1 1588 500 192 79 18 chr5 131491876 131492014 -21045245 - ID_B1 SINE B4 -68 224 86 1 1588 1520 224 42 117 chr5 131492392 131492938 -21044321 - RLTR11A LTR ERVK -17 511 7 1 1588 731 152 168 46 chr5 131492945 131493118 -21044141 + URR1B DNA MER1_type 26 219 -6 1 1588 412 214 116 0 chr5 131493220 131493332 -21043927 + B1F1 SINE Alu 24 148 -1 1 1588 206 284 0 26 chr5 131493895 131493971 -21043288 + (CA)n Simple_repeat Simple_repeat 2 75 0 1 1588 189 0 0 0 chr5 131494057 131494078 -21043181 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1588 789 302 90 21 chr5 131494100 131494489 -21042770 - RMER5 LTR ERV1 -46 488 73 1 1588 23 33 0 0 chr5 131495237 131495267 -21041992 + AT_rich Low_complexity Low_complexity 1 30 0 1 1588 234 143 34 51 chr5 131495876 131495935 -21041324 + G-rich Low_complexity Low_complexity 5 62 0 1 1588 278 79 15 45 chr5 131495981 131496047 -21041212 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1588 1181 221 16 12 chr5 131496058 131496310 -21040949 - B4A SINE B4 -1 291 39 1 1588 753 33 0 0 chr5 131496349 131496441 -21040818 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 1588 1286 114 0 24 chr5 131497357 131497563 -21039696 + URR1B DNA MER1_type 25 225 0 1 1588 1359 197 24 20 chr5 131497563 131497857 -21039402 - MTEa LTR MaLR -83 296 2 1 1588 353 222 9 27 chr5 131498111 131498222 -21039037 + G-rich Low_complexity Low_complexity 5 113 0 1 1588 188 286 0 125 chr5 131498934 131499022 -21038237 - L3 LINE CR1 -14 4475 4399 1 1588 284 258 0 0 chr5 131499332 131499394 -21037865 - ID4 SINE ID -18 65 4 1 1588 216 308 0 0 chr5 131499448 131499500 -21037759 + B1F2 SINE Alu 1 52 -97 1 1588 940 248 85 53 chr5 131499572 131499853 -21037406 + B4A SINE B4 3 292 0 1 1588 334 239 28 50 chr5 131499858 131499999 -21037260 + (CATA)n Simple_repeat Simple_repeat 3 140 0 1 1588 249 201 59 30 chr5 131500072 131500241 -21037018 + (CATATA)n Simple_repeat Simple_repeat 1 174 0 1 1588 210 245 0 19 chr5 131500246 131500300 -21036959 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1588 378 341 7 7 chr5 131500638 131500777 -21036482 + MLT1B LTR MaLR 1 139 -251 3 1588 238 279 0 0 chr5 131501032 131501113 -21036146 + T-rich Low_complexity Low_complexity 1 81 0 4 1588 234 0 0 0 chr5 131501297 131501323 -21035936 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1588 459 325 7 13 chr5 131501323 131501476 -21035783 + (CA)n Simple_repeat Simple_repeat 1 152 0 6 1588 301 329 28 61 chr5 131501482 131501663 -21035596 + MLT1B LTR MaLR 182 356 -34 3 1588 466 130 140 11 chr5 131501697 131501790 -21035469 - RLTR24 LTR ERV1 -220 309 205 7 1588 762 85 45 23 chr5 131501799 131501931 -21035328 - ORR1C2 LTR MaLR -249 135 1 8 1588 1127 235 48 26 chr5 131502086 131502357 -21034902 + MTEa LTR MaLR 103 379 0 9 1588 930 244 78 32 chr5 131502519 131502802 -21034457 - Lx8 LINE L1 -6 7467 7172 1 1588 326 198 122 12 chr5 131502858 131502940 -21034319 + PB1D10 SINE Alu 17 107 -10 1 1588 181 275 0 0 chr5 131503032 131503072 -21034187 + MIRb SINE MIR 215 254 -14 1 1588 468 35 0 0 chr5 131503327 131503385 -21033874 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1588 323 254 77 26 chr5 131503444 131503561 -21033698 + RSINE1 SINE B4 3 125 -40 1 1588 354 23 0 0 chr5 131503570 131503613 -21033646 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1588 297 0 0 0 chr5 131503613 131503646 -21033613 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1 1588 294 73 0 0 chr5 131503693 131503734 -21033525 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 1 1588 727 93 45 23 chr5 131503752 131503884 -21033375 + ORR1C2 LTR MaLR 1 135 -249 1 1588 1321 137 164 14 chr5 131503893 131504174 -21033085 + RLTR24 LTR ERV1 205 527 -2 1 1588 773 256 82 5 chr5 131504190 131504398 -21032861 + B4A SINE B4 2 225 -67 2 1588 264 267 22 11 chr5 131504436 131504527 -21032732 + (CATA)n Simple_repeat Simple_repeat 1 92 0 2 1588 184 255 0 41 chr5 131505238 131505287 -21031972 + L4 LINE RTE 1982 2028 -1 2 1588 1809 141 31 87 chr5 131505886 131506073 -21031186 + ORR1C2 LTR MaLR 18 182 -202 2 1588 868 107 11 11 chr5 131506073 131506252 -21031007 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 2 1588 1809 141 31 87 chr5 131506252 131506453 -21030806 + ORR1C2 LTR MaLR 183 384 0 2 1588 194 190 0 33 chr5 131506537 131506575 -21030684 + (TATG)n Simple_repeat Simple_repeat 2 37 0 2 1588 351 0 0 0 chr5 131506575 131506614 -21030645 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1588 194 190 0 33 chr5 131506614 131506635 -21030624 + (TATG)n Simple_repeat Simple_repeat 1 21 0 2 1588 592 300 66 57 chr5 131506675 131506919 -21030340 - MLT2F LTR ERVL -104 559 314 2 1588 361 279 10 0 chr5 131506974 131507078 -21030181 - MLT2F LTR ERVL -532 131 27 2 1588 589 301 11 32 chr5 131507587 131507776 -21029483 + MTEa LTR MaLR 1 185 -194 2 1588 521 136 240 0 chr5 131507854 131507979 -21029280 + ORR1C1 LTR MaLR 1 155 -223 3 1588 234 0 0 0 chr5 131508010 131508036 -21029223 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 3 1588 198 118 0 0 chr5 131508103 131508137 -21029122 + (CTGTG)n Simple_repeat Simple_repeat 1 34 0 3 1588 251 140 20 0 chr5 131508138 131508188 -21029071 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1588 383 301 28 70 chr5 131508338 131508481 -21028778 - B4 SINE B4 -10 282 146 3 1588 444 274 0 17 chr5 131508870 131508985 -21028274 - B3A SINE B2 -85 113 1 3 1588 954 117 0 7 chr5 131509236 131509374 -21027885 - B1_Mus2 SINE Alu -8 139 3 3 1588 587 180 0 35 chr5 131509594 131509709 -21027550 + MTEa LTR MaLR 71 181 -198 3 1588 883 184 0 0 chr5 131509709 131509850 -21027409 + B1_Mur1 SINE Alu 1 141 -8 3 1588 665 204 82 13 chr5 131509897 131510056 -21027203 + MTEa LTR MaLR 172 341 -38 3 1588 1115 29 0 7 chr5 131510362 131510503 -21026756 - L1Md_F3 LINE L1 -12 6572 6433 3 1588 326 393 58 33 chr5 131510571 131510847 -21026412 + B4A SINE B4 1 283 -9 4 1588 287 91 0 35 chr5 131510851 131510908 -21026351 + (CAGAGA)n Simple_repeat Simple_repeat 2 56 0 4 1588 343 230 39 26 chr5 131510916 131511072 -21026187 + (CAGA)n Simple_repeat Simple_repeat 1 158 0 4 1588 216 214 0 0 chr5 131511075 131511133 -21026126 + GA-rich Low_complexity Low_complexity 2 59 0 4 1588 369 95 0 0 chr5 131511133 131511196 -21026063 + (CA)n Simple_repeat Simple_repeat 2 64 0 4 1588 216 214 0 0 chr5 131511196 131511226 -21026033 + polypurine Low_complexity Low_complexity 60 89 0 4 1588 648 304 49 33 chr5 131511466 131511711 -21025548 - MTE2a LTR MaLR -8 371 123 4 1588 564 264 55 25 chr5 131511699 131511862 -21025397 + MTEb LTR MaLR 42 209 -170 4 1588 527 155 0 10 chr5 131511862 131511966 -21025293 + CT-rich Low_complexity Low_complexity 1 103 0 4 1588 628 233 39 11 chr5 131511967 131512145 -21025114 + MTEb LTR MaLR 197 379 0 4 1588 952 240 69 16 chr5 131512532 131512850 -21024409 + RLTR11A LTR ERVK 164 498 -30 4 1588 423 56 0 0 chr5 131512853 131512907 -21024352 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1588 225 226 0 0 chr5 131512979 131513032 -21024227 + CT-rich Low_complexity Low_complexity 4 56 0 5 1588 1228 54 0 0 chr5 131513032 131513179 -21024080 - B1_Mm SINE Alu 0 147 1 5 1588 293 237 74 21 chr5 131513497 131513592 -21023667 - RMER10A LTR ERVL -25 417 318 5 1588 1971 140 100 0 chr5 131513688 131514039 -21023220 + ORR1B1 LTR MaLR 1 386 -8 5 1588 254 249 106 126 chr5 131514090 131514297 -21022962 - RMER10A LTR ERVL -236 206 4 5 1588 384 22 0 0 chr5 131515468 131515513 -21021746 + (TC)n Simple_repeat Simple_repeat 1 45 0 5 1588 312 27 0 0 chr5 131515725 131515762 -21021497 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1588 228 241 0 4 chr5 131515770 131515826 -21021433 - B1F SINE Alu -43 74 20 5 1588 1361 219 69 34 chr5 131515835 131516234 -21021025 + MTD LTR MaLR 2 405 -14 5 1588 962 249 66 66 chr5 131516436 131516623 -21020636 - MTE2a LTR MaLR -5 374 184 5 1588 189 0 0 0 chr5 131516623 131516644 -21020615 + (CTTG)n Simple_repeat Simple_repeat 2 22 0 6 1588 962 262 73 67 chr5 131516644 131516862 -21020397 - MTE2a LTR MaLR -177 242 1 5 1588 932 224 159 24 chr5 131517219 131517471 -21019788 - B4 SINE B4 -6 286 1 6 1588 822 255 5 24 chr5 131517504 131517713 -21019546 - B3 SINE B2 -11 205 1 6 1588 275 389 24 24 chr5 131517812 131517978 -21019281 - MLT1A0 LTR MaLR -86 279 114 6 1588 587 281 21 51 chr5 131518582 131518815 -21018444 + MTD LTR MaLR 4 259 -160 6 1588 523 280 13 20 chr5 131518876 131519029 -21018230 + MTD LTR MaLR 266 417 -2 6 1588 410 302 26 0 chr5 131519541 131519657 -21017602 + B1F2 SINE Alu 9 127 -22 6 1588 219 88 0 0 chr5 131519799 131519833 -21017426 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 6 1588 933 240 73 85 chr5 131519837 131520178 -21017081 - MTE2a LTR MaLR -42 337 1 6 1588 932 264 86 21 chr5 131520748 131521083 -21016176 + RMER5 LTR ERV1 4 360 -174 6 1588 714 231 75 0 chr5 131521083 131521269 -21015990 - ORR1D2 LTR MaLR 0 370 171 6 1588 510 186 8 23 chr5 131521271 131521403 -21015856 + GA-rich Low_complexity Low_complexity 2 131 0 7 1588 806 239 57 6 chr5 131521406 131521583 -21015676 - ORR1D2 LTR MaLR -184 186 1 6 1588 996 255 34 113 chr5 131521822 131522229 -21015030 + MTE2a LTR MaLR 5 379 0 7 1588 1448 236 40 9 chr5 131522821 131523180 -21014079 - MTE2a LTR MaLR 0 407 18 7 1588 390 198 0 35 chr5 131523609 131523724 -21013535 + GA-rich Low_complexity Low_complexity 3 113 0 7 1588 528 236 19 0 chr5 131523747 131523885 -21013374 + B1F SINE Alu 18 144 -5 7 1588 847 163 0 0 chr5 131523890 131524031 -21013228 + ZP3AR Satellite Satellite 47 187 -25 7 1588 233 255 0 0 chr5 131523992 131524043 -21013216 + ID4_ SINE ID 1 51 -32 7 1588 1059 264 13 34 chr5 131525075 131525290 -21011969 + B4A SINE B4 1 211 -81 7 1588 378 0 0 0 chr5 131525290 131525332 -21011927 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1588 396 0 0 0 chr5 131525332 131525375 -21011884 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1588 434 49 0 16 chr5 131525380 131525442 -21011817 + (CCA)n Simple_repeat Simple_repeat 1 61 0 8 1588 1059 264 13 34 chr5 131525442 131525517 -21011742 + B4A SINE B4 214 290 -2 7 1588 365 220 7 20 chr5 131525634 131525787 -21011472 + (TG)n Simple_repeat Simple_repeat 1 151 0 8 1588 604 228 71 87 chr5 131525787 131525970 -21011289 - B3A SINE B2 -16 182 3 8 1588 39405 4 0 0 chr5 131526165 131531734 -21005525 + L1Md_A LINE L1 18 5586 -297 8 1588 9210 3 0 0 chr5 131531734 131532730 -21004529 + L1Md_A LINE L1 5587 6582 0 8 1588 338 145 277 0 chr5 131533166 131533249 -21004010 - B3A SINE B2 -89 109 4 8 1588 390 57 0 0 chr5 131533281 131533334 -21003925 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1588 272 307 191 14 chr5 131533407 131533622 -21003637 - B4A SINE B4 -14 278 26 8 1588 230 362 30 12 chr5 131533627 131533792 -21003467 - L1ME3A LINE L1 -13 6160 5993 8 1588 291 236 0 0 chr5 131533876 131533948 -21003311 + (TA)n Simple_repeat Simple_repeat 2 73 0 8 1588 279 292 114 18 chr5 131534032 131534252 -21003007 + HAL1-3A_ME LINE L1 954 1194 -1313 8 1588 198 103 0 0 chr5 131534334 131534363 -21002896 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1588 226 294 200 41 chr5 131534444 131534639 -21002620 + HAL1-3A_ME LINE L1 1344 1569 -938 8 1588 352 247 41 112 chr5 131534741 131534910 -21002349 + HAL1-3A_ME LINE L1 2281 2437 -421 8 1588 2420 117 27 2 chr5 131535363 131535766 -21001493 + MTC LTR MaLR 1 413 -8 9 1588 597 303 59 50 chr5 131535841 131536161 -21001098 + MER21B LTR ERV1 417 739 -124 9 1588 324 318 0 26 chr5 131536285 131536297 -21000962 + ID SINE ID 70 78 -146 9 1588 517 245 0 0 chr5 131536297 131536410 -21000849 + B1F SINE Alu 1 113 -7 9 1588 1033 243 65 8 chr5 131536433 131536678 -21000581 + B4 SINE B4 2 260 -32 9 1588 231 36 0 0 chr5 131536686 131536714 -21000545 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1588 622 227 34 39 chr5 131537559 131537738 -20999521 - ID_B1 SINE B4 -10 214 37 9 1588 22 70 0 0 chr5 131538081 131538124 -20999135 + AT_rich Low_complexity Low_complexity 1 43 0 9 1588 204 40 0 0 chr5 131538126 131538151 -20999108 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 9 1588 1120 64 0 6 chr5 131538151 131538308 -20998951 - B2_Mm2 SINE B2 -38 157 2 1 1588 313 343 49 14 chr5 131538747 131538889 -20998370 - B1F1 SINE Alu 0 149 3 1 1588 433 278 26 0 chr5 131538779 131538894 -20998365 - ID_B1 SINE B4 -28 196 79 1 1588 225 0 0 0 chr5 131539402 131539427 -20997832 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1 1588 631 110 10 0 chr5 131539453 131539553 -20997706 - B1_Mur4 SINE Alu -7 143 43 1 1588 244 0 0 158 chr5 131539556 131539676 -20997583 + (CTCTG)n Simple_repeat Simple_repeat 5 105 0 1 1588 323 169 0 33 chr5 131539677 131539738 -20997521 - B1_Mur4 SINE Alu -90 60 2 1 1588 412 275 30 8 chr5 131539800 131539932 -20997327 - B4 SINE B4 -157 135 1 1 1588 635 286 47 9 chr5 131540170 131540382 -20996877 - ID_B1 SINE B4 -4 220 1 1 1588 1177 62 7 0 chr5 131541715 131541861 -20995398 + B1_Mus1 SINE Alu 2 148 0 1 1588 256 122 19 48 chr5 131541861 131541964 -20995295 + A-rich Low_complexity Low_complexity 1 100 0 1 1588 300 53 0 0 chr5 131541940 131541978 -20995281 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1588 457 192 7 149 chr5 131541992 131542133 -20995126 + ZP3AR Satellite Satellite 44 164 -48 1 1588 289 250 78 0 chr5 131542332 131542396 -20994863 + ID4_ SINE ID 1 69 -14 1 1588 1038 210 8 0 chr5 131543350 131543587 -20993672 - ZP3AR Satellite Satellite -25 238 1 1 1588 245 305 38 9 chr5 131543594 131543700 -20993559 - B1F SINE Alu -19 130 22 1 1588 1999 114 71 10 chr5 131543700 131544009 -20993250 + ORR1A4 LTR MaLR 1 328 -1 1 1588 9709 117 53 116 chr5 131544010 131546080 -20991179 + ORR1A4-int LTR MaLR 24 1963 0 1 1588 1941 117 68 44 chr5 131546080 131546401 -20990858 + ORR1A4 LTR MaLR 1 329 0 1 1588 669 291 60 22 chr5 131546633 131546865 -20990394 + MTD LTR MaLR 11 251 -168 1 1588 521 250 22 36 chr5 131547067 131547204 -20990055 + B1F1 SINE Alu 14 148 -1 1 1588 794 262 84 37 chr5 131547292 131547565 -20989694 + B4A SINE B4 1 286 -6 1 1588 517 229 164 0 chr5 131548290 131548430 -20988829 + RSINE1 SINE B4 3 165 0 1 1588 467 217 13 13 chr5 131548926 131549080 -20988179 + GA-rich Low_complexity Low_complexity 3 156 0 1 1588 366 300 8 0 chr5 131549122 131549242 -20988017 + GA-rich Low_complexity Low_complexity 1 121 0 1 1588 261 0 0 0 chr5 131549242 131549271 -20987988 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1588 333 0 0 0 chr5 131549546 131549583 -20987676 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1588 431 292 112 16 chr5 131549659 131549766 -20987493 - B4 SINE B4 -21 271 159 1 1588 228 67 0 0 chr5 131549766 131549796 -20987463 + (CAGC)n Simple_repeat Simple_repeat 4 33 0 1 1588 431 292 112 16 chr5 131549796 131549876 -20987383 - B4 SINE B4 -134 158 67 1 1588 640 273 12 6 chr5 131550798 131550964 -20986295 - B4 SINE B4 0 292 126 1 1588 387 149 0 15 chr5 131551010 131551078 -20986181 - ORR1B2 LTR MaLR -8 359 293 1 1588 195 184 0 0 chr5 131551127 131551165 -20986094 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1588 296 323 62 25 chr5 131551165 131551291 -20985968 - B4 SINE B4 0 292 158 1 1588 2271 119 13 37 chr5 131551291 131551667 -20985592 - ORR1B2 LTR MaLR 0 367 1 1 1588 296 323 62 25 chr5 131551667 131551702 -20985557 - B4 SINE B4 -135 157 125 1 1588 630 261 41 8 chr5 131551727 131551938 -20985321 + B3A SINE B2 1 216 0 1 1588 1214 61 0 0 chr5 131551946 131552094 -20985165 + B1_Mus1 SINE Alu 1 148 0 1 1588 22 0 0 0 chr5 131552094 131552116 -20985143 + AT_rich Low_complexity Low_complexity 1 22 0 1 1588 270 340 80 27 chr5 131552134 131552246 -20985013 - ID_B1 SINE B4 -105 119 2 1 1588 460 295 208 0 chr5 131552346 131552529 -20984730 + ID_B1 SINE B4 4 224 0 1 1588 366 284 23 45 chr5 131552542 131552675 -20984584 + B3A SINE B2 3 132 -63 1 1588 329 281 41 36 chr5 131553419 131553552 -20983707 + B1F SINE Alu 13 149 0 1 1588 250 346 0 0 chr5 131553567 131553648 -20983611 + BC1_Mm scRNA scRNA 10 90 -62 1 1588 734 258 10 49 chr5 131553680 131553884 -20983375 - B3A SINE B2 -2 196 1 1 1588 371 316 73 29 chr5 131554384 131554521 -20982738 + ZP3AR Satellite Satellite 45 187 -25 1 1588 1264 85 11 22 chr5 131554521 131554702 -20982557 + B2_Mm1t SINE B2 1 179 -14 1 1588 483 290 19 107 chr5 131554724 131554929 -20982330 + ZP3AR Satellite Satellite 23 209 -3 1 1588 1100 254 68 15 chr5 131555449 131555817 -20981442 - MTD LTR MaLR -25 396 12 1 1588 572 260 38 65 chr5 131555896 131556081 -20981178 + MTEa LTR MaLR 4 183 -196 1 1588 423 0 0 0 chr5 131556114 131556161 -20981098 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1588 336 282 97 78 chr5 131556488 131556642 -20980617 + B4 SINE B4 136 292 0 1 1588 225 261 0 0 chr5 131556642 131556688 -20980571 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1588 419 329 33 33 chr5 131556700 131556851 -20980408 + RSINE1 SINE B4 2 152 -13 1 1588 21 36 0 0 chr5 131556858 131556886 -20980373 + AT_rich Low_complexity Low_complexity 1 28 0 1 1588 790 276 5 9 chr5 131557786 131558009 -20979250 - ID_B1 SINE B4 -1 223 2 1 1588 676 259 26 70 chr5 131558016 131558244 -20979015 - ID_B1 SINE B4 -2 222 5 1 1588 428 280 140 56 chr5 131558417 131558595 -20978664 - B3A SINE B2 -4 194 2 1 1588 504 0 0 0 chr5 131558686 131558742 -20978517 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1588 183 326 0 0 chr5 131559483 131559532 -20977727 + L2c LINE L2 3120 3168 -219 1 1588 399 41 0 0 chr5 131559582 131559631 -20977628 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1588 589 204 36 32 chr5 131559712 131559887 -20977372 - B3A SINE B2 -1 194 6 1 1588 732 278 17 25 chr5 131559888 131560124 -20977135 - B4A SINE B4 -58 234 1 1 1588 568 273 72 65 chr5 131560262 131560552 -20976707 - B4A SINE B4 0 292 1 1 1588 543 314 7 0 chr5 131560835 131560975 -20976284 + RSINE1 SINE B4 5 145 -20 1 1588 290 105 1 5 chr5 131561023 131561094 -20976165 - MTB_Mm LTR MaLR -179 240 176 1 1588 304 0 0 0 chr5 131561123 131561166 -20976093 - L1Md_T LINE L1 0 6582 6540 1 1588 248 235 0 0 chr5 131561169 131561220 -20976039 - ID_B1 SINE B4 -4 220 170 1 1588 216 222 56 0 chr5 131561172 131561226 -20976033 - PB1D10 SINE Alu -7 110 54 1 1588 1321 207 108 41 chr5 131561238 131561581 -20975678 + MTEa LTR MaLR 5 370 -9 1 1588 654 289 8 7 chr5 131562038 131562237 -20975022 + B3A SINE B2 20 214 -2 1 1588 1437 222 96 3 chr5 131562388 131562731 -20974528 + MTEa LTR MaLR 4 378 -1 1 1588 475 296 42 14 chr5 131562872 131563016 -20974243 - B4A SINE B4 -68 224 77 1 1588 1774 138 15 57 chr5 131563356 131563687 -20973572 + ORR1A3 LTR MaLR 1 317 -9 1 1588 268 295 115 8 chr5 131563704 131563834 -20973425 - RSINE1 SINE B4 -20 145 2 1 1588 945 269 67 26 chr5 131564239 131564506 -20972753 + B4A SINE B4 1 278 -14 1 1588 220 262 150 0 chr5 131564579 131564659 -20972600 + BC1_Mm scRNA scRNA 2 93 -59 1 1588 219 69 0 0 chr5 131565559 131565588 -20971671 + (ATG)n Simple_repeat Simple_repeat 1 29 0 1 1588 798 11 0 0 chr5 131565588 131565678 -20971581 + (GGAGAA)n Simple_repeat Simple_repeat 1 91 0 1 1588 943 174 4 182 chr5 131566233 131566507 -20970752 + URR1B DNA MER1_type 1 225 0 1 1588 477 253 75 31 chr5 131566537 131566696 -20970563 - L1MB7 LINE L1 -183 5991 5826 1 1588 434 253 84 26 chr5 131566711 131566865 -20970394 - RSINE1 SINE B4 0 165 3 1 1588 21 0 0 0 chr5 131566891 131566912 -20970347 + AT_rich Low_complexity Low_complexity 1 21 0 1 1588 548 226 52 8 chr5 131566954 131567088 -20970171 - MTC LTR MaLR -15 406 267 1 1588 2487 159 62 14 chr5 131567207 131567710 -20969549 - RLTR11A2 LTR ERVK 0 527 1 1 1588 741 152 0 0 chr5 131567710 131567835 -20969424 - RLTR11B LTR ERVK -328 125 1 1 1588 539 256 42 48 chr5 131567835 131568024 -20969235 - MTC LTR MaLR -222 197 10 1 1588 368 316 24 55 chr5 131568642 131568784 -20968475 + MTEa LTR MaLR 6 143 -236 1 1588 526 284 80 109 chr5 131568865 131569177 -20968082 + RMER15 LTR ERVL 181 483 -92 1 1588 765 51 0 0 chr5 131569210 131569308 -20967951 + (TG)n Simple_repeat Simple_repeat 2 99 0 1 1588 306 0 0 0 chr5 131569400 131569434 -20967825 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1588 195 42 0 0 chr5 131569567 131569591 -20967668 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1588 323 274 10 10 chr5 131569626 131569722 -20967537 + B4 SINE B4 1 96 -196 1 1588 360 262 29 0 chr5 131569725 131569812 -20967447 + B3 SINE B2 3 92 -124 1 1588 468 0 0 0 chr5 131569812 131569864 -20967395 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1588 360 262 29 0 chr5 131569864 131569879 -20967380 + B3 SINE B2 93 107 -109 1 1588 361 262 7 0 chr5 131570417 131570512 -20966747 + PB1D10 SINE Alu 3 98 -51 1 1588 817 286 28 0 chr5 131570538 131570885 -20966374 + ZP3AR Satellite Satellite 1 356 -3 1 1588 588 276 116 34 chr5 131570972 131571205 -20966054 + MLT1A0 LTR MaLR 112 363 -2 1 1588 1053 233 31 86 chr5 131571471 131571795 -20965464 - MTE2a LTR MaLR 0 379 74 1 1588 1078 217 92 65 chr5 131572519 131572888 -20964371 - MTEa LTR MaLR 0 379 1 1 1588 742 270 32 24 chr5 131573014 131573261 -20963998 + B4A SINE B4 1 249 -43 1 1588 627 250 61 0 chr5 131573779 131573927 -20963332 + RSINE1 SINE B4 5 161 -4 1 1588 744 338 15 37 chr5 131574068 131574282 -20962977 + B4 SINE B4 2 215 -77 1 1588 1196 96 6 0 chr5 131574282 131574459 -20962800 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 1 1588 744 338 15 37 chr5 131574459 131574514 -20962745 + B4 SINE B4 216 265 -27 1 1588 216 67 0 0 chr5 131574548 131574578 -20962681 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1588 848 136 19 0 chr5 131575125 131575280 -20961979 - URR1B DNA MER1_type 0 225 68 1 1588 404 369 39 45 chr5 131575336 131575490 -20961769 + B4A SINE B4 66 217 -75 1 1588 201 39 0 0 chr5 131575490 131575516 -20961743 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2 1588 404 369 39 45 chr5 131575516 131575540 -20961719 + B4A SINE B4 218 243 -49 1 1588 1532 41 7 5 chr5 131575540 131575990 -20961269 + ZP3AR Satellite Satellite 1 451 0 2 1588 720 215 104 68 chr5 131576267 131576469 -20960790 - B3A SINE B2 0 198 5 2 1588 633 14 0 0 chr5 131576523 131576597 -20960662 + (TC)n Simple_repeat Simple_repeat 1 74 0 2 1588 340 279 115 18 chr5 131577313 131577426 -20959833 + PB1 SINE Alu 3 126 -1 2 1588 571 217 17 0 chr5 131577441 131577561 -20959698 + ZP3AR Satellite Satellite 45 166 -46 2 1588 244 294 96 19 chr5 131577609 131577713 -20959546 - L1MB3 LINE L1 -93 6090 5979 2 1588 241 279 66 91 chr5 131577740 131578103 -20959156 + HAL1 LINE L1 829 1182 -1325 2 1588 1002 108 91 0 chr5 131578146 131578322 -20958937 - URR1A DNA MER1_type 0 226 35 2 1588 858 283 128 13 chr5 131578389 131578765 -20958494 - MTD LTR MaLR 0 419 1 2 1588 244 283 17 0 chr5 131578969 131579029 -20958230 + B4A SINE B4 82 142 -150 2 1588 391 235 45 18 chr5 131578978 131579103 -20958156 + PB1D10 SINE Alu 6 126 -23 2 1588 286 280 53 21 chr5 131579114 131579209 -20958050 + PB1D7 SINE Alu 22 119 -1 2 1588 449 245 38 0 chr5 131579209 131579315 -20957944 + B3A SINE B2 1 110 -88 2 1588 192 77 0 0 chr5 131579330 131579356 -20957903 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1588 723 24 0 0 chr5 131579356 131579440 -20957819 + (TC)n Simple_repeat Simple_repeat 1 85 0 2 1588 1180 68 0 0 chr5 131579530 131579677 -20957582 + B1_Mus2 SINE Alu 1 147 0 2 1588 1458 189 169 14 chr5 131579994 131580338 -20956921 - MTD LTR MaLR -5 414 18 2 1588 188 34 0 33 chr5 131580471 131580501 -20956758 + (TGGGGG)n Simple_repeat Simple_repeat 6 34 0 2 1588 225 289 167 64 chr5 131580504 131580941 -20956318 + HAL1 LINE L1 1432 1913 -594 2 1588 1496 64 2 9 chr5 131580961 131581271 -20955988 - ZP3AR Satellite Satellite -90 307 1 2 1588 236 274 135 56 chr5 131581312 131581401 -20955858 - ID_B1 SINE B4 -8 216 121 2 1588 473 356 14 0 chr5 131581785 131581931 -20955328 + RSINE1 SINE B4 4 151 -14 2 1588 861 225 50 5 chr5 131581983 131582184 -20955075 + B3 SINE B2 1 210 -6 2 1588 243 0 0 0 chr5 131582736 131582763 -20954496 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1588 349 237 25 41 chr5 131583189 131583363 -20953896 - B3A SINE B2 0 216 2 2 1588 698 190 199 11 chr5 131583606 131583787 -20953472 + Lx5 LINE L1 6824 7038 -12 2 1588 296 269 100 42 chr5 131583794 131583914 -20953345 - MTE2a LTR MaLR -168 211 85 2 1588 2001 144 56 28 chr5 131583925 131584282 -20952977 + MTC LTR MaLR 1 367 -54 2 1588 531 212 28 61 chr5 131584287 131584447 -20952812 + RMER20B LTR ERVK 4 161 -355 2 1588 298 175 0 17 chr5 131584718 131584776 -20952483 + MTC LTR MaLR 351 407 0 2 1588 407 164 0 15 chr5 131584860 131584928 -20952331 + ID_B1 SINE B4 144 210 -14 2 1588 312 27 0 0 chr5 131584928 131584965 -20952294 + (GGAA)n Simple_repeat Simple_repeat 3 39 0 2 1588 1320 34 0 32 chr5 131584976 131585161 -20952098 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 2 1588 695 101 0 18 chr5 131585169 131585280 -20951979 + (GAAA)n Simple_repeat Simple_repeat 1 109 0 2 1588 211 333 0 0 chr5 131585949 131586009 -20951250 + (CATG)n Simple_repeat Simple_repeat 3 62 0 2 1588 314 236 67 11 chr5 131586009 131586099 -20951160 - B4A SINE B4 -2 290 196 2 1588 409 308 14 14 chr5 131586262 131586410 -20950849 - B1F1 SINE Alu -1 148 1 2 1588 346 172 0 59 chr5 131586497 131586565 -20950694 - B4 SINE B4 -14 278 215 2 1588 225 0 0 0 chr5 131586565 131586590 -20950669 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1588 588 260 0 55 chr5 131586590 131586753 -20950506 - B4 SINE B4 -69 223 70 2 1588 854 152 22 0 chr5 131586753 131586891 -20950368 + B1_Mus2 SINE Alu 1 141 -6 2 1588 248 250 29 14 chr5 131586915 131586984 -20950275 - B4 SINE B4 -217 75 6 2 1588 1044 237 50 94 chr5 131587007 131587389 -20949870 - MTE2a LTR MaLR -6 373 9 2 1588 783 221 31 46 chr5 131587776 131587971 -20949288 + B3A SINE B2 1 192 -6 2 1588 647 280 34 39 chr5 131588111 131588319 -20948940 - ID_B1 SINE B4 -16 208 2 2 1588 869 258 37 14 chr5 131588554 131588770 -20948489 + B4 SINE B4 6 226 -66 2 1588 1301 112 5 16 chr5 131588785 131588976 -20948283 + B2_Mm1t SINE B2 2 190 -3 2 1588 667 309 28 24 chr5 131588987 131589242 -20948017 + B4A SINE B4 33 288 -4 2 1588 923 251 5 9 chr5 131589334 131589551 -20947708 + B3 SINE B2 1 216 0 2 1588 678 106 23 0 chr5 131589634 131589766 -20947493 + (CA)n Simple_repeat Simple_repeat 1 135 0 2 1588 655 218 184 0 chr5 131590359 131590538 -20946721 - ID_B1 SINE B4 -8 216 5 2 1588 237 267 0 0 chr5 131590664 131590724 -20946535 + MTEa LTR MaLR 6 65 -314 2 1588 679 317 103 44 chr5 131590721 131591110 -20946149 + MT2A LTR ERVL 106 517 -16 2 1588 1003 161 5 16 chr5 131591110 131591299 -20945960 - URR1B DNA MER1_type 0 225 39 2 1588 906 305 101 24 chr5 131591502 131591878 -20945381 + MTD LTR MaLR 1 405 -14 2 1588 386 241 38 0 chr5 131591894 131591973 -20945286 - B1F SINE Alu -19 130 49 2 1588 1103 231 86 64 chr5 131592287 131592647 -20944612 - ORR1D2 LTR MaLR 0 370 3 2 1588 21 0 0 0 chr5 131592726 131592747 -20944512 + AT_rich Low_complexity Low_complexity 1 21 0 2 1588 499 267 248 22 chr5 131592816 131593038 -20944221 + Lx8 LINE L1 6990 7261 -212 2 1588 765 234 0 0 chr5 131593769 131593914 -20943345 + B1F1 SINE Alu 5 149 0 2 1588 202 284 0 13 chr5 131593944 131594094 -20943165 + CT-rich Low_complexity Low_complexity 2 149 0 2 1588 430 315 0 18 chr5 131594132 131594303 -20942956 + CT-rich Low_complexity Low_complexity 1 168 0 2 1588 238 265 16 57 chr5 131594305 131594429 -20942830 + (CA)n Simple_repeat Simple_repeat 1 119 0 2 1588 531 275 74 42 chr5 131594823 131595013 -20942246 - MTEa LTR MaLR 0 379 184 2 1588 999 245 57 102 chr5 131595105 131595459 -20941800 + MTE2a LTR MaLR 1 338 -41 2 1589 414 0 0 0 chr5 131597172 131597218 -20940041 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 2 1589 426 20 0 0 chr5 131597407 131597458 -20939801 + (GA)n Simple_repeat Simple_repeat 2 52 0 2 1589 403 242 48 8 chr5 131597892 131598017 -20939242 + ID_B1 SINE B4 50 179 -45 2 1589 258 327 55 27 chr5 131597926 131598036 -20939223 + B1_Mur1 SINE Alu 5 117 -32 2 1589 795 163 0 0 chr5 131598290 131598419 -20938840 + B3 SINE B2 1 129 -87 2 1589 696 245 20 0 chr5 131598599 131598750 -20938509 + B3A SINE B2 11 164 -34 2 1589 537 88 0 0 chr5 131598750 131598830 -20938429 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 1589 231 36 0 0 chr5 131598960 131598988 -20938271 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 1589 241 321 27 36 chr5 131598999 131599109 -20938150 - RSINE1 SINE B4 -55 110 2 2 1589 893 295 43 21 chr5 131599291 131599572 -20937687 - B4 SINE B4 -4 288 2 2 1589 416 262 66 13 chr5 131599702 131599853 -20937406 - ORR1E LTR MaLR -200 159 1 2 1589 351 0 0 0 chr5 131600556 131600595 -20936664 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2 1589 581 257 76 0 chr5 131600615 131600759 -20936500 - B3A SINE B2 -42 156 2 2 1589 564 314 15 70 chr5 131600769 131600968 -20936291 - B4A SINE B4 -104 188 1 2 1589 662 225 23 8 chr5 131601363 131601493 -20935766 + RSINE1 SINE B4 3 134 -31 2 1589 348 83 0 0 chr5 131601494 131601542 -20935717 + (CATA)n Simple_repeat Simple_repeat 1 48 0 2 1589 214 158 26 0 chr5 131601597 131601635 -20935624 - B3A SINE B2 -159 39 1 2 1589 630 263 11 63 chr5 131602042 131602233 -20935026 + B4A SINE B4 29 209 -83 2 1589 685 165 0 16 chr5 131602232 131602352 -20934907 + B1_Mur4 SINE Alu 23 142 -8 2 1589 330 26 0 0 chr5 131602352 131602391 -20934868 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 2 1589 582 161 23 8 chr5 131602401 131602532 -20934727 + GA-rich Low_complexity Low_complexity 3 135 0 2 1589 546 43 0 0 chr5 131602588 131602657 -20934602 + (CA)n Simple_repeat Simple_repeat 1 69 0 2 1589 498 114 0 0 chr5 131603010 131603089 -20934170 + (CA)n Simple_repeat Simple_repeat 2 80 0 2 1589 992 244 90 26 chr5 131603305 131603650 -20933609 + MTD LTR MaLR 51 405 -14 2 1589 441 0 0 0 chr5 131604352 131604401 -20932858 + (TC)n Simple_repeat Simple_repeat 2 50 0 2 1589 261 0 0 0 chr5 131604401 131604429 -20932830 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1589 214 239 0 0 chr5 131604878 131604924 -20932335 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1589 270 284 100 43 chr5 131604963 131605103 -20932156 - B4 SINE B4 -30 262 115 2 1589 246 229 88 132 chr5 131605177 131605313 -20931946 - B1F2 SINE Alu -8 141 12 2 1589 786 156 64 0 chr5 131605314 131605455 -20931804 + B1_Mur4 SINE Alu 1 150 0 2 1589 202 87 43 0 chr5 131605455 131605501 -20931758 + (CAAAAA)n Simple_repeat Simple_repeat 6 53 0 2 1589 1083 93 4 0 chr5 131605505 131605775 -20931484 + (CAGG)n Simple_repeat Simple_repeat 1 270 0 2 1589 370 211 67 0 chr5 131605878 131605968 -20931291 - PB1D10 SINE Alu 0 117 22 2 1589 560 305 40 43 chr5 131606036 131606314 -20930945 - B4A SINE B4 -14 278 2 2 1589 322 200 67 0 chr5 131606326 131606401 -20930858 + Tigger5 DNA MER2_type 2323 2402 -4 2 1589 696 195 8 0 chr5 131606807 131606930 -20930329 + ID_B1 SINE B4 86 209 -15 2 1589 229 196 0 19 chr5 131607071 131607123 -20930136 - MurSatRep1 Unknown Unknown -1861 276 226 2 1589 823 289 17 26 chr5 131607139 131607373 -20929886 + B4 SINE B4 57 288 -4 2 1589 27 29 0 0 chr5 131607596 131607630 -20929629 + AT_rich Low_complexity Low_complexity 1 34 0 2 1589 732 238 24 10 chr5 131607787 131607993 -20929266 + B3A SINE B2 1 212 -4 2 1589 3457 194 48 8 chr5 131607994 131608664 -20928595 + Lx9 LINE L1 6761 7457 -187 3 1589 369 0 0 0 chr5 131608664 131608705 -20928554 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1589 277 279 0 0 chr5 131608878 131608946 -20928313 + RSINE1 SINE B4 3 70 -95 3 1589 212 347 51 0 chr5 131608946 131608976 -20928283 + B2_Mm2 SINE B2 2 104 -91 3 1589 261 75 0 0 chr5 131608976 131609016 -20928243 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1589 306 326 171 34 chr5 131609247 131609603 -20927656 + L1MC4 LINE L1 258 662 -5553 3 1589 1854 168 102 0 chr5 131609647 131609980 -20927279 - ORR1B2 LTR MaLR 0 367 1 3 1589 266 275 29 0 chr5 131610008 131610077 -20927182 + RSINE1 SINE B4 2 72 -93 3 1589 23 0 0 0 chr5 131610172 131610195 -20927064 + AT_rich Low_complexity Low_complexity 1 23 0 3 1589 772 249 151 61 chr5 131610207 131610519 -20926740 + MTE2a LTR MaLR 40 379 0 3 1589 613 283 28 48 chr5 131611250 131611459 -20925800 + MTD LTR MaLR 5 189 -230 3 1589 1598 168 289 22 chr5 131611466 131611867 -20925392 + Lx4B LINE L1 6550 7057 -1 3 1589 583 286 78 6 chr5 131611893 131612072 -20925187 + MTD LTR MaLR 228 419 0 3 1589 583 294 45 66 chr5 131612329 131612573 -20924686 - RMER15 LTR ERVL 0 575 337 3 1589 411 267 29 29 chr5 131612650 131612789 -20924470 - RMER15 LTR ERVL -436 139 1 3 1589 651 291 16 22 chr5 131612962 131613145 -20924114 - MTEb LTR MaLR -163 216 35 3 1589 480 172 0 0 chr5 131613403 131613519 -20923740 + GA-rich Low_complexity Low_complexity 1 116 0 3 1589 358 327 56 6 chr5 131613785 131613945 -20923314 + MIRb SINE MIR 88 255 -13 3 1589 667 130 0 0 chr5 131614119 131614234 -20923025 + ZP3AR Satellite Satellite 42 156 -56 3 1589 432 0 0 0 chr5 131614234 131614282 -20922977 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 3 1589 1332 285 8 21 chr5 131614460 131614833 -20922426 + MTE2b LTR MaLR 6 373 -6 3 1589 253 310 28 0 chr5 131615573 131615644 -20921615 + ID4_ SINE ID 7 79 -4 3 1589 222 339 32 0 chr5 131615908 131615970 -20921289 + B4A SINE B4 34 97 -195 3 1589 512 192 0 46 chr5 131615962 131616071 -20921188 + ZP3AR Satellite Satellite 44 147 -65 3 1589 280 258 139 13 chr5 131616084 131616223 -20921036 + B4 SINE B4 125 290 -2 3 1589 222 256 0 0 chr5 131616232 131616275 -20920984 + (CG)n Simple_repeat Simple_repeat 2 44 0 3 1589 483 18 0 0 chr5 131616275 131616331 -20920928 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1589 263 236 69 0 chr5 131616357 131616429 -20920830 + ID4 SINE ID 4 80 -3 3 1589 339 302 67 0 chr5 131616495 131616644 -20920615 + L1MA5 LINE L1 6131 6289 -11 3 1589 692 254 0 0 chr5 131617899 131618033 -20919226 - RSINE1 SINE B4 -29 136 3 3 1589 547 298 119 52 chr5 131618244 131618513 -20918746 - B4A SINE B4 -2 290 4 3 1589 1430 206 49 114 chr5 131618537 131618985 -20918274 + MTD LTR MaLR 1 419 0 3 1589 215 200 40 0 chr5 131618993 131619043 -20918216 + (CATG)n Simple_repeat Simple_repeat 1 52 0 3 1589 535 274 35 35 chr5 131619133 131619303 -20917956 - Lx8 LINE L1 -361 7112 6943 3 1589 867 249 131 8 chr5 131619685 131619944 -20917315 + B4 SINE B4 2 292 0 3 1589 1288 266 32 42 chr5 131620262 131620670 -20916589 + MTD LTR MaLR 1 404 -15 3 1589 330 87 0 0 chr5 131620746 131620792 -20916467 + (TCCTG)n Simple_repeat Simple_repeat 3 48 0 3 1589 526 224 32 0 chr5 131621157 131621282 -20915977 + RMER15 LTR ERVL 430 558 -17 3 1589 782 310 35 46 chr5 131621342 131621762 -20915497 + MTE2a LTR MaLR 5 404 -15 3 1589 707 300 90 4 chr5 131622206 131622440 -20914819 + Lx8 LINE L1 7034 7287 -186 3 1589 1323 247 59 50 chr5 131622502 131622860 -20914399 + MTEa LTR MaLR 4 364 -15 3 1589 573 224 235 62 chr5 131623585 131623849 -20913410 + Lx8 LINE L1 7150 7461 -12 3 1589 339 85 0 0 chr5 131623849 131623896 -20913363 + (TAA)n Simple_repeat Simple_repeat 2 48 0 3 1589 260 204 63 110 chr5 131623896 131623910 -20913349 + Lx8 LINE L1 7462 7473 0 3 1589 225 208 0 36 chr5 131624082 131624137 -20913122 + B4A SINE B4 1 53 -239 3 1589 396 62 0 0 chr5 131624137 131624185 -20913074 - L1_Mur2 LINE L1 -346 5531 5484 3 1589 1105 24 0 0 chr5 131624184 131624307 -20912952 + L1Md_F2 LINE L1 5464 5586 -297 3 1589 8291 42 5 0 chr5 131624307 131625294 -20911965 + L1Md_F2 LINE L1 5587 6578 -4 3 1589 999 231 8 55 chr5 131625294 131625507 -20911752 + B4A SINE B4 45 249 -43 3 1589 1321 82 44 0 chr5 131625507 131625689 -20911570 + B2_Mm2 SINE B2 1 190 -5 3 1589 999 231 8 55 chr5 131625689 131625732 -20911527 + B4A SINE B4 250 289 -3 3 1589 579 262 13 33 chr5 131625929 131626079 -20911180 + B1F SINE Alu 2 148 -1 3 1589 416 74 36 24 chr5 131626128 131626211 -20911048 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 3 1589 715 238 56 91 chr5 131626350 131626581 -20910678 - ID_B1 SINE B4 0 224 2 3 1589 198 167 0 0 chr5 131627040 131627076 -20910183 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 3 1589 632 216 7 33 chr5 131627096 131627249 -20910010 - ID_B1 SINE B4 -12 212 64 3 1589 201 298 18 0 chr5 131627965 131628022 -20909237 + (CATATA)n Simple_repeat Simple_repeat 4 61 0 3 1589 564 294 0 0 chr5 131628072 131628208 -20909051 - ZP3AR Satellite Satellite -39 173 38 3 1589 246 189 19 0 chr5 131628712 131628765 -20908494 + PB1D10 SINE Alu 21 74 -43 3 1589 30 0 0 0 chr5 131628773 131628803 -20908456 + AT_rich Low_complexity Low_complexity 1 30 0 3 1589 299 290 115 0 chr5 131628816 131628993 -20908266 + L1M4 LINE L1 5533 5727 -515 3 1589 315 65 0 0 chr5 131629084 131629130 -20908129 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 3 1589 303 93 0 0 chr5 131629150 131629193 -20908066 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1589 370 152 47 29 chr5 131629203 131629373 -20907886 + (TAGA)n Simple_repeat Simple_repeat 3 175 0 3 1589 212 220 0 39 chr5 131629387 131629439 -20907820 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 3 1589 417 39 0 0 chr5 131629898 131629949 -20907310 + (TTA)n Simple_repeat Simple_repeat 1 51 0 3 1589 816 143 0 7 chr5 131630002 131630143 -20907116 + ZP3AR Satellite Satellite 32 171 -41 3 1589 580 293 7 14 chr5 131630132 131630274 -20906985 + B4 SINE B4 150 290 -2 3 1589 212 175 35 17 chr5 131630367 131630425 -20906834 + T-rich Low_complexity Low_complexity 4 62 0 3 1589 1113 209 183 25 chr5 131630740 131631063 -20906196 - MTEa LTR MaLR -3 376 3 3 1589 438 94 0 0 chr5 131631071 131631135 -20906124 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1589 333 0 0 0 chr5 131631135 131631171 -20906088 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1589 581 285 71 29 chr5 131631217 131631387 -20905872 + B4 SINE B4 44 220 -72 3 1589 255 351 21 0 chr5 131631406 131631500 -20905759 + (CATG)n Simple_repeat Simple_repeat 3 98 0 3 1589 414 0 0 0 chr5 131632080 131632126 -20905133 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1589 396 0 0 0 chr5 131632126 131632169 -20905090 + (GA)n Simple_repeat Simple_repeat 1 44 0 3 1589 444 238 32 16 chr5 131632186 131632310 -20904949 - RSINE1 SINE B4 -35 130 5 3 1589 697 296 6 6 chr5 131632338 131632515 -20904744 - B3A SINE B2 -20 178 2 3 1589 402 275 13 53 chr5 131632612 131632762 -20904497 + B4A SINE B4 2 145 -147 3 1589 251 303 112 60 chr5 131632764 131633031 -20904228 + ORR1E LTR MaLR 44 324 -35 3 1589 430 262 116 41 chr5 131633113 131633260 -20903999 - RSINE1 SINE B4 -5 160 3 3 1589 495 185 175 8 chr5 131633365 131633485 -20903774 + B1_Mur3 SINE Alu 9 148 -1 3 1589 650 309 29 0 chr5 131633540 131633750 -20903509 - ID_B1 SINE B4 -8 216 1 3 1589 228 163 0 0 chr5 131634163 131634206 -20903053 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1589 201 121 0 0 chr5 131634245 131634278 -20902981 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 1589 229 315 0 36 chr5 131634304 131634416 -20902843 + (CATATA)n Simple_repeat Simple_repeat 5 112 0 3 1589 1176 180 24 5 chr5 131634674 131634886 -20902373 + ID_B1 SINE B4 3 218 -6 3 1589 273 57 0 0 chr5 131635228 131635263 -20901996 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 3 1589 223 123 73 44 chr5 131635316 131635384 -20901875 + T-rich Low_complexity Low_complexity 4 73 0 3 1589 634 178 54 0 chr5 131635398 131635527 -20901732 - B1F SINE Alu -1 148 13 3 1589 288 0 0 0 chr5 131635623 131635655 -20901604 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1589 662 173 94 0 chr5 131636220 131636347 -20900912 - B1_Mus1 SINE Alu -8 140 2 3 1589 400 250 74 8 chr5 131636349 131636470 -20900789 - B1F SINE Alu 0 149 21 3 1589 886 143 85 140 chr5 131636801 131636896 -20900363 + URR1B DNA MER1_type 1 92 -133 3 1589 1286 34 0 0 chr5 131636896 131637043 -20900216 - B1_Mm SINE Alu 0 147 1 3 1589 886 143 85 140 chr5 131637043 131637183 -20900076 + URR1B DNA MER1_type 93 223 -2 3 1589 924 228 128 70 chr5 131637431 131637704 -20899555 + B4 SINE B4 3 291 -1 3 1589 639 292 0 123 chr5 131637775 131637937 -20899322 + B3A SINE B2 1 146 -52 3 1589 386 85 17 0 chr5 131637937 131637996 -20899263 + (CA)n Simple_repeat Simple_repeat 2 61 0 3 1589 413 292 0 123 chr5 131637996 131638044 -20899215 + B2_Mm2 SINE B2 143 185 -10 3 1589 619 150 98 38 chr5 131638060 131638192 -20899067 + B1_Mus2 SINE Alu 1 140 -7 3 1589 217 102 20 39 chr5 131638228 131638279 -20898980 + (CAA)n Simple_repeat Simple_repeat 1 50 0 3 1589 245 237 0 48 chr5 131638645 131638707 -20898552 - RMER21B LTR ERV1 -112 835 777 3 1589 609 254 199 5 chr5 131638734 131638940 -20898319 - RMER21B LTR ERV1 -275 567 322 3 1589 1003 225 192 15 chr5 131639053 131639387 -20897872 - MTD LTR MaLR -14 405 13 3 1589 262 61 20 20 chr5 131639387 131639437 -20897822 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 3 1589 350 259 34 54 chr5 131639515 131639662 -20897597 - B1F1 SINE Alu -5 144 1 3 1589 1309 240 75 0 chr5 131639700 131640021 -20897238 + MTEa LTR MaLR 20 364 -15 3 1589 263 333 11 0 chr5 131640093 131640180 -20897079 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 1589 1402 243 91 82 chr5 131640408 131640747 -20896512 - RMER15 LTR ERVL 0 575 221 3 1589 1191 166 8 63 chr5 131640747 131640985 -20896274 + URR1B DNA MER1_type 1 225 0 4 1589 1402 243 91 82 chr5 131640985 131641170 -20896089 - RMER15 LTR ERVL -355 220 46 3 1589 395 285 184 31 chr5 131641353 131641614 -20895645 + RMER15 LTR ERVL 275 575 0 4 1589 842 188 114 0 chr5 131642131 131642307 -20894952 + B3 SINE B2 11 206 -10 4 1589 711 223 0 28 chr5 131642331 131642474 -20894785 + B1_Mur2 SINE Alu 5 143 -6 4 1589 326 184 0 13 chr5 131642474 131642551 -20894708 + GA-rich Low_complexity Low_complexity 1 76 0 4 1589 882 282 89 53 chr5 131642637 131642975 -20894284 + L1MA5A LINE L1 5591 5939 -361 4 1589 315 0 0 0 chr5 131642975 131643010 -20894249 + (CA)n Simple_repeat Simple_repeat 2 36 0 4 1589 836 282 89 53 chr5 131643010 131643087 -20894172 + L1MA5A LINE L1 5940 6020 -280 4 1589 288 53 0 0 chr5 131643092 131643130 -20894129 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1589 180 0 0 0 chr5 131643130 131643149 -20894110 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1589 213 240 0 0 chr5 131643218 131643268 -20893991 + A-rich Low_complexity Low_complexity 1 50 0 4 1589 360 0 0 0 chr5 131643839 131643879 -20893380 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1589 1273 232 48 36 chr5 131644125 131644460 -20892799 + ORR1D2 LTR MaLR 20 358 -12 4 1589 216 0 0 0 chr5 131644460 131644484 -20892775 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1589 546 256 115 101 chr5 131644662 131644958 -20892301 + RMER15 LTR ERVL 273 572 -3 4 1589 390 284 20 26 chr5 131645375 131645527 -20891732 + GA-rich Low_complexity Low_complexity 3 153 0 4 1589 670 256 0 0 chr5 131645528 131645661 -20891598 + RSINE1 SINE B4 2 134 -31 4 1589 414 0 0 0 chr5 131646268 131646314 -20890945 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1589 375 278 0 20 chr5 131646371 131646470 -20890789 + B4A SINE B4 1 97 -195 4 1589 434 260 9 0 chr5 131646524 131646647 -20890612 - L1M3 LINE L1 -654 5646 5523 4 1589 252 59 0 0 chr5 131646655 131646689 -20890570 + (G)n Simple_repeat Simple_repeat 1 34 0 4 1589 248 304 34 41 chr5 131646743 131646943 -20890316 - L1M5 LINE L1 -678 5478 5284 4 1589 222 91 0 0 chr5 131646959 131646992 -20890267 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 4 1589 620 269 82 18 chr5 131647047 131647217 -20890042 - B3A SINE B2 -16 182 2 4 1589 1346 219 83 44 chr5 131647751 131648114 -20889145 - MTEa LTR MaLR 0 379 3 4 1589 771 274 119 88 chr5 131648333 131648653 -20888606 - ORR1E LTR MaLR -9 350 21 4 1589 6507 197 61 28 chr5 131648933 131649109 -20888150 + Lx7 LINE L1 6149 6323 -1373 4 1589 2372 113 3 0 chr5 131649109 131649435 -20887824 + ORR1A2 LTR MaLR 1 327 0 4 1589 6507 204 67 32 chr5 131649435 131650767 -20886492 + Lx7 LINE L1 6324 7610 -86 4 1589 567 0 0 0 chr5 131651010 131651073 -20886186 + (CTG)n Simple_repeat Simple_repeat 2 64 0 4 1589 1197 88 0 0 chr5 131651074 131651564 -20885695 + (TCC)n Simple_repeat Simple_repeat 1 490 0 4 1589 1205 221 26 33 chr5 131651659 131651931 -20885328 + Lx8 LINE L1 6879 7148 -325 4 1589 566 113 10 0 chr5 131652073 131652170 -20885089 + (TCCA)n Simple_repeat Simple_repeat 4 101 0 4 1589 431 275 5 48 chr5 131652183 131652370 -20884889 + (CATA)n Simple_repeat Simple_repeat 1 179 0 4 1589 235 263 6 17 chr5 131652403 131652581 -20884678 + (TA)n Simple_repeat Simple_repeat 2 177 0 4 1589 720 229 14 94 chr5 131653837 131654049 -20883210 + B3A SINE B2 1 195 -3 4 1589 23 33 0 0 chr5 131654187 131654217 -20883042 + AT_rich Low_complexity Low_complexity 1 30 0 4 1589 333 256 120 0 chr5 131654442 131654559 -20882700 - MTEa LTR MaLR 0 379 249 4 1589 432 298 63 34 chr5 131654895 131655100 -20882159 + RMER15 LTR ERVL 275 485 -90 4 1589 180 0 0 0 chr5 131655139 131655159 -20882100 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1589 285 109 0 0 chr5 131655223 131655269 -20881990 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1589 566 208 9 0 chr5 131655733 131655839 -20881420 + PB1D10 SINE Alu 1 107 -10 4 1589 2354 208 25 23 chr5 131655839 131655913 -20881346 + RLTR28 LTR ERVL 5 85 -439 4 1589 315 0 0 0 chr5 131655913 131655948 -20881311 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1589 2354 208 25 23 chr5 131655948 131656391 -20880868 + RLTR28 LTR ERVL 86 523 -1 4 1589 1019 130 6 0 chr5 131656401 131656570 -20880689 + (GGA)n Simple_repeat Simple_repeat 2 171 0 4 1589 422 335 26 21 chr5 131656744 131656933 -20880326 + MLT2B3 LTR ERVL 12 201 -353 4 1589 343 218 16 44 chr5 131656938 131657120 -20880139 + CT-rich Low_complexity Low_complexity 1 177 0 4 1589 428 197 15 30 chr5 131657587 131657718 -20879541 + C-rich Low_complexity Low_complexity 2 130 0 4 1589 229 328 0 0 chr5 131657726 131657784 -20879475 - ID4 SINE ID -20 63 6 4 1589 258 247 52 0 chr5 131657785 131657862 -20879397 - PB1D10 SINE Alu -2 115 35 4 1589 599 244 79 69 chr5 131658017 131658206 -20879053 - B3A SINE B2 -7 191 1 4 1589 355 329 36 132 chr5 131658293 131658542 -20878717 + B4A SINE B4 2 226 -66 4 1589 706 231 200 12 chr5 131658566 131658811 -20878448 + B4 SINE B4 2 292 0 4 1589 1308 255 60 25 chr5 131658848 131659282 -20877977 + L1MB3 LINE L1 5529 5977 -206 4 1589 425 207 0 0 chr5 131659347 131659429 -20877830 + ID_B1 SINE B4 134 215 -9 4 1589 350 188 35 59 chr5 131659358 131659443 -20877816 + B1F SINE Alu 67 149 0 4 1589 255 316 143 19 chr5 131659447 131659608 -20877651 + L1MB3 LINE L1 5986 6166 -5 4 1589 373 252 16 57 chr5 131659728 131659850 -20877409 + PB1 SINE Alu 1 117 -10 4 1589 943 244 8 0 chr5 131659874 131660072 -20877187 + ZP3AR Satellite Satellite 1 199 -1 4 1589 515 16 16 0 chr5 131660095 131660159 -20877100 + (GA)n Simple_repeat Simple_repeat 1 65 0 4 1589 506 181 413 0 chr5 131660484 131660639 -20876620 + ID_B1 SINE B4 5 223 -1 4 1589 934 215 9 33 chr5 131661278 131661490 -20875769 - B3 SINE B2 -7 209 3 4 1589 1233 211 77 42 chr5 131661526 131661707 -20875552 + MTEa LTR MaLR 11 202 -177 4 1589 459 0 0 0 chr5 131661707 131661758 -20875501 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1589 1233 211 77 42 chr5 131661758 131661912 -20875347 + MTEa LTR MaLR 203 357 -22 4 1589 396 0 0 0 chr5 131662146 131662190 -20875069 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1589 298 322 18 0 chr5 131662449 131662620 -20874639 + CT-rich Low_complexity Low_complexity 1 174 0 4 1589 1270 96 6 22 chr5 131663595 131663777 -20873482 - B2_Mm2 SINE B2 -12 183 5 4 1589 700 264 15 58 chr5 131663783 131663988 -20873271 - B3A SINE B2 -2 196 1 4 1589 509 335 50 61 chr5 131664036 131664313 -20872946 - B4 SINE B4 -10 282 9 4 1589 217 298 137 11 chr5 131664334 131664429 -20872830 - PB1D10 SINE Alu -8 109 3 4 1589 558 251 102 24 chr5 131664807 131664974 -20872285 - B3A SINE B2 -18 180 1 4 1589 434 274 40 108 chr5 131665169 131665345 -20871914 - B3A SINE B2 -2 196 33 4 1589 708 322 22 41 chr5 131665412 131665681 -20871578 + B4 SINE B4 1 264 -28 4 1589 25 75 0 0 chr5 131665747 131665800 -20871459 + AT_rich Low_complexity Low_complexity 1 53 0 4 1589 378 0 0 0 chr5 131665804 131665846 -20871413 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1589 297 0 0 0 chr5 131665846 131665878 -20871381 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1589 426 278 26 0 chr5 131665879 131665994 -20871265 - RSINE1 SINE B4 -43 122 5 4 1589 327 271 53 15 chr5 131666260 131666391 -20870868 - L1MB1 LINE L1 -35 6154 6019 4 1589 2650 243 49 3 chr5 131666452 131667080 -20870179 + Lx9 LINE L1 6765 7421 -223 4 1589 403 276 0 19 chr5 131667115 131667222 -20870037 + PB1D10 SINE Alu 6 110 -7 4 1589 801 162 28 0 chr5 131667336 131667478 -20869781 - B1_Mur3 SINE Alu -1 148 3 4 1589 341 263 115 46 chr5 131667481 131667734 -20869525 + ORR1E LTR MaLR 83 379 0 4 1589 609 72 0 0 chr5 131668083 131668166 -20869093 + (TG)n Simple_repeat Simple_repeat 2 84 0 4 1589 1252 291 32 40 chr5 131668765 131669144 -20868115 + MTEa LTR MaLR 1 376 -3 4 1589 244 281 89 24 chr5 131669265 131669389 -20867870 + MIRc SINE MIR 75 206 -62 4 1589 1228 225 40 11 chr5 131669495 131669773 -20867486 + B4 SINE B4 1 286 -6 4 1589 309 135 0 0 chr5 131669785 131669837 -20867422 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1589 260 353 67 126 chr5 131670226 131670495 -20866764 - ORR1E LTR MaLR -13 346 94 4 1589 198 0 0 0 chr5 131670648 131670670 -20866589 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1589 1224 224 124 34 chr5 131670674 131671029 -20866230 + MTD LTR MaLR 20 406 -13 4 1589 450 0 0 0 chr5 131671521 131671571 -20865688 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 4 1589 234 0 0 0 chr5 131671771 131671797 -20865462 + (TTGG)n Simple_repeat Simple_repeat 1 26 0 4 1589 207 0 0 0 chr5 131671877 131671900 -20865359 + (TGGA)n Simple_repeat Simple_repeat 1 23 0 4 1589 286 258 13 0 chr5 131671907 131672066 -20865193 + (TTGG)n Simple_repeat Simple_repeat 2 162 0 4 1589 255 291 169 0 chr5 131672618 131672766 -20864493 + ORR1E LTR MaLR 175 347 -12 4 1589 673 263 73 113 chr5 131672802 131673296 -20863963 - L1ME2 LINE L1 -9 6155 5682 4 1589 315 85 0 0 chr5 131673894 131673941 -20863318 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 4 1589 727 277 62 99 chr5 131673977 131674350 -20862909 + MTE2a LTR MaLR 3 361 -18 4 1589 753 338 14 40 chr5 131674355 131674651 -20862608 - B4 SINE B4 -4 288 1 4 1589 746 313 42 59 chr5 131674644 131675000 -20862259 - ORR1E LTR MaLR -3 356 7 4 1589 616 230 22 0 chr5 131675903 131676038 -20861221 + B3A SINE B2 2 139 -59 4 1589 1451 230 61 11 chr5 131676315 131676675 -20860584 + MTEa LTR MaLR 1 378 -1 4 1589 801 250 31 90 chr5 131677403 131677693 -20859566 + MTEb LTR MaLR 3 275 -104 4 1589 620 268 117 106 chr5 131677689 131678039 -20859220 + MTE2a LTR MaLR 8 361 -18 5 1589 407 204 59 30 chr5 131678057 131678158 -20859101 + MTEb LTR MaLR 269 372 -7 4 1589 624 242 110 18 chr5 131679046 131679210 -20858049 + B3A SINE B2 1 179 -19 5 1589 342 279 14 7 chr5 131679247 131679388 -20857871 + (TA)n Simple_repeat Simple_repeat 2 143 0 5 1589 866 217 45 87 chr5 131679445 131679733 -20857526 - MTE2a LTR MaLR -39 340 65 5 1589 1010 270 33 4 chr5 131679984 131680064 -20857195 + B4 SINE B4 3 82 -210 5 1589 302 0 26 0 chr5 131680064 131680102 -20857157 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1589 1010 270 33 4 chr5 131680102 131680296 -20856963 + B4 SINE B4 83 284 -8 5 1589 621 290 62 0 chr5 131680337 131680499 -20856760 - B3 SINE B2 -36 180 9 5 1589 249 231 121 15 chr5 131680747 131680772 -20856487 + ID_B1 SINE B4 50 122 -102 5 1589 267 171 0 0 chr5 131680772 131680813 -20856446 + PB1D9 SINE Alu 1 41 -79 5 1589 855 244 40 25 chr5 131680952 131681150 -20856109 - B3 SINE B2 -6 210 10 5 1589 417 279 38 81 chr5 131681187 131681347 -20855912 - MTEa LTR MaLR -226 153 1 5 1589 517 213 65 0 chr5 131681909 131682017 -20855242 - B3A SINE B2 -79 119 5 5 1589 1371 112 91 10 chr5 131682019 131682227 -20855032 - URR1B DNA MER1_type 0 225 1 5 1589 372 182 154 48 chr5 131682240 131682344 -20854915 - PB1D7 SINE Alu 0 120 6 5 1589 192 77 0 0 chr5 131682510 131682536 -20854723 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 5 1589 324 268 49 0 chr5 131682829 131682911 -20854348 + B4 SINE B4 2 87 -205 5 1589 439 319 103 29 chr5 131682925 131683167 -20854092 + B4A SINE B4 2 261 -31 5 1589 269 222 0 16 chr5 131683855 131683919 -20853340 + MER63D DNA AcHobo 317 379 -682 5 1589 327 180 0 16 chr5 131684065 131684127 -20853132 + MER63D DNA AcHobo 319 379 -682 5 1589 180 77 0 0 chr5 131684373 131684399 -20852860 + (CA)n Simple_repeat Simple_repeat 1 26 0 5 1589 873 78 8 0 chr5 131685783 131685912 -20851347 - ZP3AR Satellite Satellite -74 138 9 5 1589 26 82 0 0 chr5 131685976 131686037 -20851222 + AT_rich Low_complexity Low_complexity 1 61 0 5 1589 342 0 0 0 chr5 131686456 131686494 -20850765 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1589 398 282 42 17 chr5 131686515 131686634 -20850625 - B4 SINE B4 -18 274 153 5 1589 813 216 159 13 chr5 131686675 131686914 -20850345 - B4 SINE B4 -16 276 3 5 1589 1114 285 13 47 chr5 131687670 131688050 -20849209 - MTEa LTR MaLR 0 379 13 5 1589 237 333 0 12 chr5 131688091 131688173 -20849086 - MLT1B LTR MaLR -290 100 20 5 1589 557 309 0 24 chr5 131688286 131688455 -20848804 - B3A SINE B2 -32 166 2 5 1589 502 200 36 9 chr5 131688729 131688840 -20848419 + ID_B1 SINE B4 76 189 -35 5 1589 361 223 8 89 chr5 131688736 131688859 -20848400 + PB1D10 SINE Alu 5 117 0 5 1589 486 331 14 0 chr5 131688870 131688934 -20848325 + ID SINE ID 17 82 -142 5 1589 259 324 66 9 chr5 131688934 131689040 -20848219 + PB1D7 SINE Alu 1 112 -8 5 1589 1108 182 22 9 chr5 131689055 131689277 -20847982 + URR1B DNA MER1_type 1 225 0 5 1589 318 179 134 0 chr5 131689428 131689495 -20847764 + B2_Mm2 SINE B2 2 77 -118 5 1589 495 87 0 0 chr5 131689580 131689649 -20847610 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1589 225 0 0 0 chr5 131690043 131690068 -20847191 + (TTA)n Simple_repeat Simple_repeat 2 26 0 5 1589 304 297 43 21 chr5 131690138 131690279 -20846980 - B1F SINE Alu -5 144 1 5 1589 758 194 8 139 chr5 131690360 131690612 -20846647 + URR1B DNA MER1_type 7 225 0 5 1589 598 263 7 0 chr5 131690613 131690750 -20846509 - B1F2 SINE Alu -9 140 3 5 1589 251 274 27 14 chr5 131690899 131690973 -20846286 + G-rich Low_complexity Low_complexity 5 79 0 5 1589 322 219 9 9 chr5 131690973 131691079 -20846180 + GA-rich Low_complexity Low_complexity 2 107 0 5 1589 978 130 6 11 chr5 131691079 131691258 -20846001 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 5 1589 887 136 4 52 chr5 131691802 131692001 -20845258 + ZP3AR Satellite Satellite 1 189 -1 5 1589 3673 88 0 10 chr5 131692081 131692572 -20844687 - L1_Mus2 LINE L1 -1 6565 6080 5 1589 358 315 0 0 chr5 131693034 131693123 -20844136 + RSINE1 SINE B4 7 95 -70 5 1589 1807 145 89 6 chr5 131693167 131693494 -20843765 + ORR1B1 LTR MaLR 41 394 0 5 1589 484 312 0 25 chr5 131693824 131693982 -20843277 + RSINE1 SINE B4 3 156 -9 5 1589 212 59 29 0 chr5 131693994 131694028 -20843231 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1589 416 323 7 49 chr5 131694082 131694274 -20842985 - B3A SINE B2 -7 191 13 5 1589 1442 221 56 11 chr5 131694490 131694847 -20842412 + MTEb LTR MaLR 3 375 -4 5 1589 401 329 0 7 chr5 131695348 131695486 -20841773 + ID_B1 SINE B4 82 218 -6 5 1589 1388 108 0 0 chr5 131695481 131695700 -20841559 + ZP3AR Satellite Satellite 1 219 0 5 1589 273 191 0 68 chr5 131695641 131695714 -20841545 + ID4_ SINE ID 1 68 -15 5 1589 260 280 98 77 chr5 131695681 131695824 -20841435 + RMER15 LTR ERVL 416 561 -14 5 1589 1031 195 48 6 chr5 131696766 131696983 -20840276 - ZP3AR Satellite Satellite 0 226 1 5 1589 281 219 41 0 chr5 131696990 131697063 -20840196 - B1F SINE Alu 0 149 74 5 1589 369 360 22 58 chr5 131697396 131697620 -20839639 + MTEb LTR MaLR 1 216 -163 5 1589 634 217 31 8 chr5 131697714 131697844 -20839415 + Lx8 LINE L1 6832 6964 -509 5 1589 2150 160 50 5 chr5 131697844 131698221 -20839038 + ORR1B1 LTR MaLR 1 394 0 5 1589 230 277 31 0 chr5 131698277 131698342 -20838917 - Lx8 LINE L1 -326 7147 7081 5 1589 1232 145 48 17 chr5 131698343 131698574 -20838685 - ORR1A3 LTR MaLR -88 238 1 5 1589 255 275 12 0 chr5 131699409 131699489 -20837770 - B4A SINE B4 -209 83 3 5 1589 342 327 9 0 chr5 131699954 131700067 -20837192 + PB1D7 SINE Alu 6 119 -1 5 1589 741 260 158 12 chr5 131700096 131700349 -20836910 + B4 SINE B4 1 290 -2 5 1589 237 65 0 0 chr5 131700370 131700401 -20836858 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1589 252 200 126 29 chr5 131700618 131700721 -20836538 - MTD LTR MaLR 0 419 307 5 1589 852 287 102 99 chr5 131700805 131700909 -20836350 + Charlie7 DNA MER1_type 1912 2013 -599 5 1589 733 280 0 27 chr5 131700909 131701096 -20836163 + B3A SINE B2 1 182 -16 5 1589 852 287 102 99 chr5 131701096 131701659 -20835600 + Charlie7 DNA MER1_type 2014 2581 -31 5 1589 484 241 28 0 chr5 131701783 131701891 -20835368 + ZP3AR Satellite Satellite 38 148 -64 5 1589 320 241 36 48 chr5 131701891 131701974 -20835285 + ID4_ SINE ID 1 82 -1 5 1589 782 232 119 41 chr5 131702626 131702895 -20834364 + B4 SINE B4 2 291 -1 5 1589 28 0 0 0 chr5 131703117 131703145 -20834114 + AT_rich Low_complexity Low_complexity 1 28 0 5 1589 1299 73 67 6 chr5 131703149 131703328 -20833931 + B2_Mm2 SINE B2 2 191 -4 5 1589 471 78 0 0 chr5 131703423 131703487 -20833772 + (TG)n Simple_repeat Simple_repeat 2 65 0 5 1589 667 272 6 43 chr5 131703513 131703691 -20833568 - ID_B1 SINE B4 -42 250 79 5 1589 424 285 77 0 chr5 131703691 131703821 -20833438 - B1F1 SINE Alu -8 141 2 5 1589 776 240 4 10 chr5 131704072 131704240 -20833019 - B3A SINE B2 -35 160 1 5 1589 246 246 14 42 chr5 131704805 131704877 -20832382 + ZP3AR Satellite Satellite 47 116 -96 5 1589 889 238 29 10 chr5 131705026 131705234 -20832025 + ID_B1 SINE B4 8 219 -5 5 1589 496 306 7 7 chr5 131705968 131706106 -20831153 + B4A SINE B4 1 138 -154 5 1589 419 320 52 20 chr5 131706339 131706492 -20830767 + B4A SINE B4 131 288 -4 5 1589 413 278 9 9 chr5 131706558 131706667 -20830592 + PB1D10 SINE Alu 1 109 -8 5 1589 685 171 1 47 chr5 131707308 131707458 -20829801 + MTC LTR MaLR 276 407 -14 5 1589 240 232 18 0 chr5 131707614 131707670 -20829589 - ID4 SINE ID -22 61 5 5 1589 342 0 0 0 chr5 131707873 131707911 -20829348 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1589 409 256 66 0 chr5 131707922 131708043 -20829216 - RSINE1 SINE B4 -30 135 7 5 1589 225 304 0 47 chr5 131708052 131708159 -20829100 - BC1_Mm scRNA scRNA -45 107 6 5 1589 728 244 52 24 chr5 131708192 131708402 -20828857 - ID_B1 SINE B4 -8 216 1 5 1589 201 74 0 0 chr5 131708665 131708692 -20828567 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5 1589 399 325 97 48 chr5 131709042 131709249 -20828010 - B4A SINE B4 -16 276 60 5 1589 407 231 132 89 chr5 131709280 131709361 -20827898 - B3A SINE B2 0 198 115 5 1589 504 48 0 0 chr5 131709361 131709424 -20827835 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1589 407 231 132 89 chr5 131709424 131709532 -20827727 - B3A SINE B2 -84 114 1 5 1589 511 216 18 9 chr5 131710251 131710363 -20826896 + PB1D7 SINE Alu 7 119 -1 5 1589 505 209 365 19 chr5 131710875 131711089 -20826170 + B4 SINE B4 5 292 0 5 1589 486 257 90 70 chr5 131711530 131711731 -20825528 + ORR1E LTR MaLR 6 210 -149 5 1589 244 284 45 11 chr5 131711770 131711859 -20825400 + ORR1E LTR MaLR 288 379 0 5 1589 1104 182 113 0 chr5 131711890 131712093 -20825166 - URR1A DNA MER1_type 0 226 1 5 1589 438 311 49 20 chr5 131712157 131712360 -20824899 + MLT1D LTR MaLR 263 471 -34 5 1589 470 119 0 12 chr5 131712681 131712766 -20824493 + (CA)n Simple_repeat Simple_repeat 2 85 0 5 1589 619 302 72 57 chr5 131713644 131713978 -20823281 - ORR1E LTR MaLR -2 357 19 5 1589 216 97 0 0 chr5 131714075 131714106 -20823153 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 5 1589 307 254 94 58 chr5 131714304 131714442 -20822817 - MLT1A1 LTR MaLR -12 396 254 5 1589 677 256 26 31 chr5 131714488 131714714 -20822545 - RMER15 LTR ERVL -15 560 336 5 1589 246 337 24 12 chr5 131715021 131715105 -20822154 - MLT1A1 LTR MaLR -323 85 1 5 1589 677 292 65 42 chr5 131715347 131715608 -20821651 + B4 SINE B4 8 274 -18 6 1589 288 241 0 0 chr5 131715636 131715715 -20821544 + (CA)n Simple_repeat Simple_repeat 2 80 0 6 1589 613 243 13 63 chr5 131715836 131715994 -20821265 - B3A SINE B2 -47 151 2 6 1589 809 227 162 153 chr5 131716544 131716987 -20820272 + MT2A LTR ERVL 1 447 -86 6 1589 332 119 23 45 chr5 131717035 131717123 -20820136 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 6 1589 243 91 0 0 chr5 131717899 131717932 -20819327 + U2 snRNA snRNA 1 33 -155 6 1589 423 0 0 0 chr5 131718074 131718121 -20819138 + (TC)n Simple_repeat Simple_repeat 2 48 0 6 1589 429 222 85 31 chr5 131718367 131718497 -20818762 - MLT1A1 LTR MaLR -4 404 268 6 1589 309 256 0 93 chr5 131718622 131718708 -20818551 + RSINE1 SINE B4 3 80 -85 6 1589 562 318 85 93 chr5 131718725 131719231 -20818028 + RLTR18 LTR ERVK 31 532 -84 6 1589 401 321 28 42 chr5 131719182 131719325 -20817934 + B4 SINE B4 11 151 -141 6 1589 1379 137 4 252 chr5 131719340 131719800 -20817459 + RLTR24 LTR ERV1 26 371 -158 6 1589 447 226 128 17 chr5 131719800 131719917 -20817342 + B1_Mus1 SINE Alu 2 131 -17 6 1589 203 0 37 0 chr5 131719926 131719953 -20817306 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 6 1589 624 137 17 17 chr5 131719987 131720106 -20817153 + RLTR24 LTR ERV1 411 529 0 6 1589 310 314 8 76 chr5 131720109 131720240 -20817019 + B4 SINE B4 165 286 -6 6 1589 180 261 0 0 chr5 131720243 131720308 -20816951 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 6 1589 1175 245 93 44 chr5 131720862 131720891 -20816368 - MTD LTR MaLR -15 404 380 6 1589 1357 138 32 0 chr5 131720891 131721108 -20816151 + URR1B DNA MER1_type 1 224 -1 6 1589 1175 245 93 44 chr5 131721108 131721463 -20815796 - MTD LTR MaLR -40 379 1 6 1589 293 252 113 30 chr5 131721463 131721622 -20815637 - MTD LTR MaLR -203 193 1 6 1589 248 289 11 0 chr5 131721725 131721815 -20815444 + L1MC LINE L1 5688 5778 -2104 6 1589 450 0 0 0 chr5 131721835 131721885 -20815374 + (A)n Simple_repeat Simple_repeat 1 50 0 6 1589 1138 128 157 10 chr5 131722014 131722211 -20815048 - URR1A DNA MER1_type 0 226 1 6 1589 459 100 0 0 chr5 131722426 131722496 -20814763 + (TG)n Simple_repeat Simple_repeat 1 70 0 6 1589 289 294 0 0 chr5 131722524 131722592 -20814667 + B4 SINE B4 88 155 -137 6 1589 486 240 16 32 chr5 131722691 131722816 -20814443 + B4A SINE B4 170 292 0 6 1589 752 251 5 21 chr5 131723187 131723374 -20813885 + B3A SINE B2 3 186 -12 6 1589 357 232 0 0 chr5 131723505 131723600 -20813659 + (TA)n Simple_repeat Simple_repeat 1 95 0 6 1589 573 261 119 61 chr5 131724016 131724277 -20812982 - B4A SINE B4 -14 278 3 6 1589 654 278 5 74 chr5 131724504 131724538 -20812721 - B3A SINE B2 -7 191 162 6 1589 261 83 0 0 chr5 131724538 131724574 -20812685 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1589 654 278 5 74 chr5 131724574 131724741 -20812518 - B3A SINE B2 -37 161 4 6 1589 191 272 83 42 chr5 131724880 131724976 -20812283 - MIR SINE MIR -122 140 41 6 1589 347 281 107 8 chr5 131725007 131725129 -20812130 + B1F1 SINE Alu 1 134 -15 6 1589 303 85 0 0 chr5 131725133 131725180 -20812079 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 6 1589 218 208 52 10 chr5 131725207 131725304 -20811955 + A-rich Low_complexity Low_complexity 3 103 0 6 1589 618 129 70 13 chr5 131725307 131725464 -20811795 + GA-rich Low_complexity Low_complexity 2 167 0 6 1589 779 200 344 28 chr5 131725866 131726148 -20811111 + MTEb LTR MaLR 1 371 -8 6 1589 690 239 11 141 chr5 131726276 131726539 -20810720 - MER2 DNA MER2_type 0 345 117 6 1589 830 265 14 5 chr5 131726643 131726859 -20810400 + MER58B DNA MER1_type 124 341 0 6 1589 253 256 31 42 chr5 131727103 131727211 -20810048 + PB1D10 SINE Alu 15 119 -8 6 1589 451 196 0 32 chr5 131727236 131727331 -20809928 + ZP3AR Satellite Satellite 4 95 -117 6 198 238 314 14 0 chr5 131727331 131727401 -20809858 + ID4 SINE ID 2 72 -11 6 1590 459 0 0 0 chr5 131727524 131727575 -20809684 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1590 335 247 151 0 chr5 131727724 131727817 -20809442 - PB1D7 SINE Alu -4 116 10 6 1590 869 143 0 7 chr5 131728283 131728431 -20808828 + Lx2 LINE L1 6849 6995 -2 6 1590 495 260 43 70 chr5 131728517 131728703 -20808556 + ORR1E LTR MaLR 3 183 -176 6 1590 504 267 40 20 chr5 131729041 131729190 -20808069 + MTEa LTR MaLR 1 152 -227 6 1590 545 76 13 0 chr5 131729205 131729284 -20807975 + (TC)n Simple_repeat Simple_repeat 2 81 0 6 1590 435 167 31 16 chr5 131729299 131729381 -20807878 + CT-rich Low_complexity Low_complexity 49 132 0 6 1590 1250 56 0 35 chr5 131729381 131729757 -20807502 + (TTC)n Simple_repeat Simple_repeat 1 362 0 6 1590 435 167 31 16 chr5 131729757 131729797 -20807462 + polypyrimidine Low_complexity Low_complexity 8 48 0 6 1590 610 237 7 0 chr5 131729809 131729948 -20807311 + MTEa LTR MaLR 240 379 0 6 1590 189 0 0 0 chr5 131730472 131730493 -20806766 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1590 333 307 57 0 chr5 131730493 131730633 -20806626 - B1F SINE Alu -1 148 1 6 1590 21 0 0 0 chr5 131730724 131730745 -20806514 + AT_rich Low_complexity Low_complexity 1 21 0 6 1590 259 265 14 14 chr5 131730749 131730818 -20806441 + ID2 SINE ID 14 82 -1 6 1590 543 274 93 93 chr5 131731399 131731689 -20805570 + B4A SINE B4 3 292 0 6 1590 432 0 0 0 chr5 131731690 131731738 -20805521 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1590 563 256 153 16 chr5 131731749 131731932 -20805327 + B4 SINE B4 81 288 -4 6 1590 249 349 12 0 chr5 131732615 131732799 -20804460 + (TGGG)n Simple_repeat Simple_repeat 1 186 0 6 1590 328 211 31 9 chr5 131732838 131733073 -20804186 + (CATA)n Simple_repeat Simple_repeat 1 240 0 6 1590 422 49 16 0 chr5 131733105 131733166 -20804093 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 6 1590 507 232 153 10 chr5 131733570 131733766 -20803493 + ID_B1 SINE B4 1 224 0 6 1590 270 136 0 0 chr5 131733770 131733814 -20803445 + (GGGAA)n Simple_repeat Simple_repeat 3 46 0 6 1590 747 196 0 0 chr5 131734111 131734264 -20802995 + CT-rich Low_complexity Low_complexity 2 154 0 6 1590 270 0 0 0 chr5 131734260 131734290 -20802969 + (TC)n Simple_repeat Simple_repeat 1 30 0 6 1590 399 250 32 11 chr5 131734290 131734383 -20802876 - RSINE1 SINE B4 -70 95 1 6 1590 195 129 0 0 chr5 131734719 131734750 -20802509 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 6 1590 455 134 0 12 chr5 131734939 131735022 -20802237 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 6 1590 263 264 69 76 chr5 131735676 131735807 -20801452 + L1M5 LINE L1 5565 5694 -470 6 1590 420 332 59 5 chr5 131735818 131735962 -20801297 + B3A SINE B2 1 149 -67 6 1590 330 26 0 0 chr5 131735962 131736001 -20801258 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1590 414 353 44 61 chr5 131736001 131736037 -20801222 + B3 SINE B2 150 178 -38 6 1590 633 239 0 0 chr5 131736045 131736204 -20801055 + (TA)n Simple_repeat Simple_repeat 1 159 0 6 1590 765 217 0 0 chr5 131736245 131736420 -20800839 + (TA)n Simple_repeat Simple_repeat 1 175 0 6 1590 847 220 5 45 chr5 131736623 131736823 -20800436 + B3A SINE B2 7 198 0 6 1590 544 312 11 11 chr5 131736872 131737047 -20800212 + MER58A DNA MER1_type 37 211 -13 6 1590 225 65 0 0 chr5 131737350 131737381 -20799878 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1590 316 319 133 0 chr5 131737475 131737588 -20799671 + ID_B1 SINE B4 81 208 -16 6 1590 216 0 0 0 chr5 131737700 131737724 -20799535 + (TC)n Simple_repeat Simple_repeat 2 25 0 6 1590 426 39 0 0 chr5 131737724 131737775 -20799484 + (TA)n Simple_repeat Simple_repeat 1 52 0 6 1590 360 0 0 0 chr5 131737775 131737814 -20799445 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1590 4316 260 71 18 chr5 131737816 131739036 -20798223 + Lx9 LINE L1 6358 7642 -2 6 1590 533 246 8 8 chr5 131739152 131739279 -20797980 + RSINE1 SINE B4 4 130 -35 6 1590 263 180 0 0 chr5 131739705 131739755 -20797504 - MTEb LTR MaLR -3 376 327 6 1590 647 276 0 0 chr5 131739781 131739933 -20797326 + RSINE1 SINE B4 1 152 -13 6 1590 450 36 0 0 chr5 131739937 131739993 -20797266 + (CA)n Simple_repeat Simple_repeat 2 57 0 6 1590 225 0 0 0 chr5 131740475 131740500 -20796759 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1590 302 264 56 22 chr5 131740507 131740596 -20796663 - B4 SINE B4 0 292 201 6 1590 321 307 75 10 chr5 131740654 131740855 -20796404 - RMER15 LTR ERVL -15 560 347 6 1590 1761 209 67 0 chr5 131740885 131741273 -20795986 - MTD LTR MaLR -5 414 1 6 1590 367 250 0 91 chr5 131741568 131741656 -20795603 - B4 SINE B4 -192 100 22 6 1590 2241 81 14 69 chr5 131741656 131742002 -20795257 + ORR1A2 LTR MaLR 1 327 0 6 1590 367 250 0 91 chr5 131742002 131742023 -20795236 - B4 SINE B4 -271 21 1 6 1590 430 316 77 26 chr5 131742187 131742460 -20794799 + B4A SINE B4 2 288 -4 6 1590 225 254 17 0 chr5 131742465 131742524 -20794735 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1590 1105 68 0 20 chr5 131742803 131742953 -20794306 + B1_Mus1 SINE Alu 2 148 0 6 1590 227 79 26 0 chr5 131743067 131743105 -20794154 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 6 1590 198 209 56 69 chr5 131743773 131743845 -20793414 + MER5A DNA MER1_type 4 74 -115 6 1590 218 286 0 35 chr5 131743846 131743904 -20793355 + RSINE1 SINE B4 4 59 -106 6 1590 240 35 0 0 chr5 131743942 131743971 -20793288 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1590 355 350 7 35 chr5 131744283 131744428 -20792831 + B4A SINE B4 3 143 -149 6 1590 660 256 31 52 chr5 131744529 131744723 -20792536 + B3A SINE B2 20 209 -7 6 1590 717 217 14 0 chr5 131744740 131744878 -20792381 + B1_Mur1 SINE Alu 5 144 -5 6 1590 726 212 194 6 chr5 131744917 131745097 -20792162 + B3 SINE B2 3 216 0 6 1590 390 57 0 0 chr5 131745191 131745244 -20792015 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1590 530 276 102 20 chr5 131745577 131745773 -20791486 + B4 SINE B4 2 213 -79 6 1590 228 143 0 0 chr5 131745788 131745830 -20791429 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 6 1590 270 0 0 0 chr5 131745917 131745947 -20791312 + (CA)n Simple_repeat Simple_repeat 2 31 0 7 1590 712 241 21 0 chr5 131746066 131746211 -20791048 + B3A SINE B2 1 148 -50 7 1590 387 0 0 0 chr5 131746231 131746274 -20790985 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 1590 361 297 11 173 chr5 131746833 131746989 -20790270 - B4A SINE B4 -141 151 23 7 1590 1336 157 46 0 chr5 131746989 131747205 -20790054 + URR1A DNA MER1_type 1 226 0 7 1590 361 297 11 173 chr5 131747205 131747227 -20790032 - B4A SINE B4 -270 22 2 7 1590 307 321 127 11 chr5 131747267 131747456 -20789803 + L1MEf LINE L1 819 1029 -5171 7 1590 776 152 18 12 chr5 131747460 131747626 -20789633 + GA-rich Low_complexity Low_complexity 4 170 0 7 1590 1009 117 23 0 chr5 131747626 131747797 -20789462 + (GGAA)n Simple_repeat Simple_repeat 1 175 0 7 1590 623 273 202 29 chr5 131747807 131748218 -20789041 + L1MEf LINE L1 1036 1517 -4683 7 1590 460 211 5 3 chr5 131748249 131748333 -20788926 + B3A SINE B2 1 85 -110 7 1590 298 220 27 99 chr5 131748333 131748444 -20788815 + RLTR13D3 LTR ERVK 1 103 -1011 7 1590 259 329 62 34 chr5 131748775 131748951 -20788308 + RLTR3_Mm LTR ERVK 627 807 -521 7 1590 461 228 35 17 chr5 131749341 131749457 -20787802 + RLTR13D3 LTR ERVK 997 1114 0 7 1590 385 202 141 0 chr5 131749461 131749560 -20787699 + B3A SINE B2 86 198 0 7 1590 22 35 0 0 chr5 131749788 131749817 -20787442 + AT_rich Low_complexity Low_complexity 1 29 0 7 1590 858 268 30 50 chr5 131750241 131750540 -20786719 - ORR1E LTR MaLR -45 314 22 7 1590 570 287 86 96 chr5 131750654 131750955 -20786304 - ORR1E LTR MaLR -80 298 1 7 1590 240 35 0 0 chr5 131751505 131751534 -20785725 + (A)n Simple_repeat Simple_repeat 1 29 0 7 1590 1169 268 86 14 chr5 131751555 131751903 -20785356 - MTEa LTR MaLR -4 375 3 7 1590 791 270 102 148 chr5 131752051 131752076 -20785183 + B4A SINE B4 1 24 -268 7 1590 3290 33 15 3 chr5 131752076 131752467 -20784792 - MTA_Mm LTR MaLR 0 396 1 7 1590 791 270 102 148 chr5 131752467 131752745 -20784514 + B4A SINE B4 25 290 -2 7 1590 399 41 0 0 chr5 131752793 131752842 -20784417 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1590 332 250 0 24 chr5 131752842 131752924 -20784335 + PB1D10 SINE Alu 26 105 -12 7 1590 267 31 0 0 chr5 131752924 131752956 -20784303 + (ATG)n Simple_repeat Simple_repeat 2 33 0 7 1590 460 218 35 0 chr5 131753720 131753807 -20783452 + ID_B1 SINE B4 84 173 -51 7 1590 27 29 0 0 chr5 131753917 131753951 -20783308 + AT_rich Low_complexity Low_complexity 1 34 0 7 1590 572 222 196 0 chr5 131753982 131754135 -20783124 + B3A SINE B2 1 183 -15 7 1590 363 241 0 12 chr5 131754205 131754285 -20782974 + ID4_ SINE ID 2 80 -3 7 1590 312 298 0 63 chr5 131754356 131754467 -20782792 + PB1D10 SINE Alu 14 117 0 7 1590 261 276 26 13 chr5 131754479 131754556 -20782703 + ID4_ SINE ID 1 78 -5 7 1590 1622 32 5 0 chr5 131754732 131754922 -20782337 + B2_Mm1t SINE B2 1 191 -2 7 1590 290 213 71 50 chr5 131754937 131755036 -20782223 - PB1D10 SINE Alu -8 109 9 7 1590 271 274 27 0 chr5 131755467 131755540 -20781719 - PB1D7 SINE Alu -45 75 1 7 1590 634 229 0 7 chr5 131755556 131755701 -20781558 - B1F SINE Alu 0 149 6 7 1590 609 208 173 19 chr5 131756313 131756475 -20780784 + B3A SINE B2 1 187 -11 7 1590 287 287 35 0 chr5 131756696 131756783 -20780476 - B1F SINE Alu -29 120 31 7 1590 308 290 0 0 chr5 131756788 131756857 -20780402 - ID4 SINE ID -13 70 2 7 1590 596 350 10 0 chr5 131756944 131757141 -20780118 - B4A SINE B4 -93 199 1 7 1590 291 279 12 0 chr5 131757145 131757231 -20780028 - B1F SINE Alu -2 147 61 7 1590 228 261 46 0 chr5 131757612 131757677 -20779582 + B1F SINE Alu 46 113 -36 7 1590 552 251 28 34 chr5 131757675 131757852 -20779407 + B3A SINE B2 22 197 -1 7 1590 220 125 13 89 chr5 131757853 131757932 -20779327 + (TTATA)n Simple_repeat Simple_repeat 5 77 0 7 1590 320 317 119 24 chr5 131758273 131758483 -20778776 + L1M5 LINE L1 5394 5623 -501 7 1590 506 16 16 0 chr5 131758547 131758610 -20778649 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 7 1590 1179 113 0 0 chr5 131758613 131758844 -20778415 + (GGGA)n Simple_repeat Simple_repeat 1 231 0 7 1590 227 365 24 0 chr5 131758985 131759070 -20778189 + MTEb LTR MaLR 5 91 -288 7 1590 693 184 11 74 chr5 131759280 131759456 -20777803 - B3 SINE B2 -47 169 5 7 1590 310 227 29 49 chr5 131759542 131759644 -20777615 + MTEb LTR MaLR 251 350 -29 7 1590 273 229 16 0 chr5 131759864 131759925 -20777334 + CT-rich Low_complexity Low_complexity 2 63 0 7 1590 775 284 14 5 chr5 131759926 131760135 -20777124 - ID_B1 SINE B4 -12 212 2 7 1590 440 350 39 42 chr5 131760154 131760461 -20776798 + Tigger13a DNA MER2_type 36 341 -430 7 1590 716 247 0 18 chr5 131760686 131760855 -20776404 + B4 SINE B4 5 170 -122 7 1590 565 62 5 105 chr5 131761021 131761221 -20776038 + (CACAC)n Simple_repeat Simple_repeat 1 180 0 7 1590 251 159 52 23 chr5 131761205 131761379 -20775880 + (CA)n Simple_repeat Simple_repeat 1 179 0 7 1590 257 232 0 104 chr5 131761432 131761509 -20775750 + B4A SINE B4 224 292 0 7 1590 427 141 0 0 chr5 131761833 131761904 -20775355 - ORR1B2 LTR MaLR -279 88 18 7 1590 469 291 0 119 chr5 131761904 131762064 -20775195 + B4 SINE B4 152 292 0 7 1590 808 306 17 48 chr5 131762614 131762909 -20774350 - B4A SINE B4 -6 286 1 7 1590 367 292 53 0 chr5 131762951 131763064 -20774195 - ORR1E LTR MaLR -231 128 10 7 1590 256 204 0 36 chr5 131763312 131763368 -20773891 + MIR SINE MIR 199 252 -10 7 1590 426 206 132 72 chr5 131763491 131763643 -20773616 - MLT1F1 LTR MaLR -6 573 413 7 1590 194 150 0 24 chr5 131763804 131763845 -20773414 + C-rich Low_complexity Low_complexity 5 44 0 7 1590 427 370 1 18 chr5 131763856 131764088 -20773171 - MLT1F1 LTR MaLR -324 231 9 7 1590 505 246 7 171 chr5 131764139 131764291 -20772968 + B3A SINE B2 1 127 -71 7 1590 2538 98 41 2 chr5 131764308 131764719 -20772540 - RLTR44C LTR ERVK -25 477 51 7 1590 629 261 41 128 chr5 131764955 131765197 -20772062 - B4 SINE B4 0 292 72 7 1590 284 182 0 0 chr5 131765820 131765875 -20771384 + PB1D10 SINE Alu 29 83 -34 7 1590 819 252 45 165 chr5 131765884 131766283 -20770976 - MTE2a LTR MaLR -8 371 21 7 1590 1671 220 37 32 chr5 131766283 131766691 -20770568 + MTD LTR MaLR 1 410 -9 7 1590 267 191 0 0 chr5 131766733 131766780 -20770479 + B1F1 SINE Alu 65 111 -38 7 1590 681 249 62 46 chr5 131767279 131767473 -20769786 + B3A SINE B2 1 197 -1 7 1590 775 307 47 40 chr5 131767607 131767885 -20769374 + B4 SINE B4 8 287 -5 7 1590 368 155 0 14 chr5 131767926 131767991 -20769268 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1590 4852 158 64 21 chr5 131767991 131768861 -20768398 + RMER13B LTR ERVK 1 908 0 7 1590 368 155 0 14 chr5 131768861 131768867 -20768392 + (CA)n Simple_repeat Simple_repeat 2 7 0 7 1590 207 0 0 0 chr5 131768885 131768908 -20768351 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1590 363 268 40 30 chr5 131768979 131769079 -20768180 + RSINE1 SINE B4 48 148 -17 7 1590 367 262 138 116 chr5 131769085 131769266 -20767993 + B4 SINE B4 46 230 -62 7 1590 416 274 32 0 chr5 131769337 131769432 -20767827 + PB1D7 SINE Alu 16 113 -7 7 1590 204 143 0 0 chr5 131769444 131769486 -20767773 + (A)n Simple_repeat Simple_repeat 1 42 0 7 1590 846 139 0 28 chr5 131770352 131770493 -20766766 + B1_Mur4 SINE Alu 9 145 -5 7 1590 556 24 73 0 chr5 131770510 131770592 -20766667 + (GGGGA)n Simple_repeat Simple_repeat 5 92 0 7 1590 694 209 94 30 chr5 131770601 131770803 -20766456 + ORR1E LTR MaLR 23 237 -122 7 1590 410 143 0 28 chr5 131771467 131771539 -20765720 + B3A SINE B2 1 70 -128 7 1590 812 193 133 15 chr5 131771564 131771759 -20765500 + B4A SINE B4 3 220 -72 7 1590 387 0 0 0 chr5 131771846 131771889 -20765370 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 7 1590 334 227 0 15 chr5 131772020 131772087 -20765172 + B4A SINE B4 223 288 -4 7 1590 440 325 74 0 chr5 131772124 131772287 -20764972 - B3A SINE B2 -21 177 3 7 1590 730 280 50 14 chr5 131772349 131772570 -20764689 + B4 SINE B4 1 229 -63 7 1590 540 268 126 65 chr5 131772907 131773170 -20764089 + B4 SINE B4 3 281 -11 7 1590 459 0 0 0 chr5 131773178 131773229 -20764030 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1590 559 222 67 169 chr5 131773236 131773491 -20763768 - MER44A DNA MER2_type -110 229 1 7 1590 267 235 0 29 chr5 131773656 131773726 -20763533 - RMER30 DNA MER1_type -60 142 75 7 1590 300 263 101 0 chr5 131773761 131773860 -20763399 + PB1D10 SINE Alu 1 109 -8 7 1590 194 231 38 19 chr5 131773956 131774009 -20763250 - L2a LINE L2 -15 3411 3358 7 1590 881 262 61 32 chr5 131774173 131774453 -20762806 - B4A SINE B4 -4 288 1 7 1590 768 230 30 56 chr5 131775161 131775244 -20762015 - B3A SINE B2 -1 197 117 7 1590 1405 137 0 54 chr5 131775244 131775483 -20761776 + URR1A DNA MER1_type 1 226 0 7 1590 768 230 30 56 chr5 131775483 131775597 -20761662 - B3A SINE B2 -82 116 5 7 1590 980 212 54 5 chr5 131775624 131775828 -20761431 - B3 SINE B2 -1 215 2 7 1590 422 301 0 0 chr5 131776029 131776142 -20761117 + ID_B1 SINE B4 78 190 -34 7 1590 201 277 31 0 chr5 131776695 131776760 -20760499 + MIR SINE MIR 106 172 -90 7 1590 603 213 0 8 chr5 131777950 131778078 -20759181 + ID_B1 SINE B4 98 224 0 7 1590 266 250 147 0 chr5 131778201 131778269 -20758990 - ID4 SINE ID -1 82 5 7 1590 492 86 0 0 chr5 131778816 131778886 -20758373 + (TCCC)n Simple_repeat Simple_repeat 1 70 0 7 1590 685 279 22 14 chr5 131778888 131779110 -20758149 - ID_B1 SINE B4 0 224 1 7 1590 223 372 18 9 chr5 131779289 131779403 -20757856 + MER5A DNA MER1_type 50 164 -25 7 1590 478 301 0 46 chr5 131779668 131779821 -20757438 + B4A SINE B4 147 292 0 7 1590 384 321 57 0 chr5 131780550 131780690 -20756569 + RSINE1 SINE B4 4 151 -14 8 1590 255 61 0 0 chr5 131780699 131780732 -20756527 + (CAATA)n Simple_repeat Simple_repeat 2 34 0 8 1590 285 29 0 0 chr5 131780737 131780771 -20756488 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1590 853 260 102 35 chr5 131780813 131780894 -20756365 + B4 SINE B4 1 79 -213 8 1590 207 0 0 0 chr5 131780894 131780917 -20756342 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8 1590 853 260 102 35 chr5 131780917 131781090 -20756169 + B4 SINE B4 80 271 -21 8 1590 222 37 0 0 chr5 131781094 131781121 -20756138 + (CA)n Simple_repeat Simple_repeat 1 27 0 8 1590 486 0 0 0 chr5 131781551 131781605 -20755654 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1590 22 0 0 0 chr5 131784235 131784257 -20753002 + AT_rich Low_complexity Low_complexity 1 22 0 8 1590 506 276 16 8 chr5 131784542 131784670 -20752589 + ID_B1 SINE B4 64 192 -32 8 1590 220 265 56 78 chr5 131784775 131784865 -20752394 - B4A SINE B4 -118 174 87 8 1590 189 0 0 0 chr5 131784985 131785006 -20752253 + (A)n Simple_repeat Simple_repeat 1 21 0 8 1590 1255 93 31 0 chr5 131785073 131785267 -20751992 - RMER4B LTR ERVK -370 215 16 8 1590 890 198 0 41 chr5 131785352 131785521 -20751738 - RSINE1 SINE B4 0 165 4 8 1590 367 223 73 55 chr5 131786015 131786124 -20751135 - PB1D10 SINE Alu -7 113 3 8 1590 1429 94 32 5 chr5 131786218 131786555 -20750704 - ZP3AR Satellite Satellite -35 346 1 8 1590 814 250 53 69 chr5 131786927 131787245 -20750014 + ORR1E LTR MaLR 11 323 -36 8 1590 425 254 9 26 chr5 131787347 131787460 -20749799 + PB1D7 SINE Alu 1 111 -9 8 1590 405 0 0 0 chr5 131787617 131787662 -20749597 + (TG)n Simple_repeat Simple_repeat 1 45 0 8 1590 409 263 193 42 chr5 131787678 131787916 -20749343 - B4 SINE B4 -18 274 1 8 1590 557 265 43 4 chr5 131788231 131788377 -20748882 - B1F1 SINE Alu -11 138 9 8 1590 263 250 14 14 chr5 131788470 131788543 -20748716 + GA-rich Low_complexity Low_complexity 3 75 0 8 1590 483 287 86 60 chr5 131788752 131789019 -20748240 + B4 SINE B4 3 276 -16 8 1590 395 202 0 23 chr5 131789371 131789457 -20747802 + B4 SINE B4 3 86 -206 8 1590 495 127 0 54 chr5 131789464 131789556 -20747703 + B2_Mm2 SINE B2 1 87 -108 8 1590 28 29 0 0 chr5 131789564 131789599 -20747660 + AT_rich Low_complexity Low_complexity 1 35 0 8 1590 537 316 6 6 chr5 131789641 131789800 -20747459 - Lx8 LINE L1 -766 6707 6549 8 1590 245 333 51 59 chr5 131789815 131790188 -20747071 + Lx8 LINE L1 7094 7463 -10 8 1590 237 132 0 0 chr5 131790213 131790251 -20747008 + (TAA)n Simple_repeat Simple_repeat 2 39 0 8 1590 298 250 31 0 chr5 131790264 131790328 -20746931 + ID4_ SINE ID 2 67 -16 8 1590 213 175 0 0 chr5 131790364 131790404 -20746855 + G-rich Low_complexity Low_complexity 1 40 0 8 1590 351 0 0 0 chr5 131790891 131790930 -20746329 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1590 611 243 73 31 chr5 131790942 131791133 -20746126 - B4A SINE B4 -15 277 79 8 1590 1121 222 32 138 chr5 131791131 131791508 -20745751 + MTEb LTR MaLR 32 368 -11 8 1590 3723 107 3 42 chr5 131791582 131792156 -20745103 - Lx2A1 LINE L1 0 7008 6457 8 1590 414 281 29 7 chr5 131792465 131792605 -20744654 - B1F1 SINE Alu -6 143 1 8 1590 230 235 73 0 chr5 131792624 131792692 -20744567 - L1M5 LINE L1 -414 5750 5678 8 1590 547 272 18 0 chr5 131792744 131792858 -20744401 - RSINE1 SINE B4 -2 163 48 8 1590 443 244 0 11 chr5 131793075 131793162 -20744097 - PB1D7 SINE Alu -8 112 27 8 1590 2031 123 97 43 chr5 131793166 131793558 -20743701 - MTC LTR MaLR -8 413 1 8 1590 214 100 100 0 chr5 131793692 131793732 -20743527 + CT-rich Low_complexity Low_complexity 2 45 0 8 1590 418 289 9 17 chr5 131793732 131793848 -20743411 - PB1D10 SINE Alu -1 116 2 8 1590 393 117 0 0 chr5 131794623 131794683 -20742576 + (TG)n Simple_repeat Simple_repeat 2 61 0 8 1590 287 250 12 62 chr5 131794684 131794765 -20742494 - ORR1D2 LTR MaLR -292 78 2 8 1590 966 262 13 9 chr5 131795949 131796180 -20741079 + B4A SINE B4 55 286 -6 8 1590 502 272 51 23 chr5 131796351 131796566 -20740693 + ORR1E LTR MaLR 11 216 -154 8 1590 321 182 52 0 chr5 131796589 131796666 -20740593 - RMER17C LTR ERVK 0 410 330 8 1590 626 227 0 28 chr5 131797864 131798009 -20739250 - B4A SINE B4 -8 284 144 8 1590 780 11 0 0 chr5 131798020 131798109 -20739150 + (TCTCCC)n Simple_repeat Simple_repeat 6 94 0 8 1590 185 210 16 0 chr5 131798142 131798204 -20739055 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 8 1590 279 248 41 16 chr5 131798241 131798311 -20738948 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 8 1590 283 44 44 0 chr5 131798311 131798356 -20738903 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 8 1590 279 248 41 16 chr5 131798356 131798408 -20738851 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 8 1590 722 265 132 16 chr5 131798709 131798958 -20738301 + MTE2a LTR MaLR 18 295 -84 8 1590 207 0 0 0 chr5 131799257 131799280 -20737979 + (TA)n Simple_repeat Simple_repeat 2 24 0 8 1590 760 186 122 0 chr5 131799281 131799453 -20737806 - ID_B1 SINE B4 0 224 32 8 1590 444 19 0 0 chr5 131799689 131799742 -20737517 + (TG)n Simple_repeat Simple_repeat 1 53 0 8 1590 324 365 0 0 chr5 131799743 131799839 -20737420 - B4A SINE B4 -5 287 192 8 1590 1649 117 13 147 chr5 131799859 131799930 -20737329 - ORR1A4 LTR MaLR 0 329 286 8 1590 4077 62 10 0 chr5 131799930 131800442 -20736817 - Lx3_Mus LINE L1 -5 7004 6488 8 1590 1649 117 13 147 chr5 131800442 131800750 -20736509 - ORR1A4 LTR MaLR -44 285 1 8 1590 519 286 35 7 chr5 131800750 131800891 -20736368 - B4A SINE B4 -140 152 8 8 1590 436 281 74 28 chr5 131800896 131801116 -20736143 - L1M5 LINE L1 -689 5484 5256 8 1590 1207 220 112 9 chr5 131801284 131801614 -20735645 - MTE2b LTR MaLR -13 366 3 8 1590 427 341 30 70 chr5 131801622 131801852 -20735407 + B4A SINE B4 72 292 0 8 1590 1506 195 70 12 chr5 131802480 131802807 -20734452 + ORR1D1 LTR MaLR 29 374 0 8 1590 361 274 93 77 chr5 131803435 131803460 -20733799 - B2_Mm2 SINE B2 -1 194 170 8 1590 414 0 0 0 chr5 131803460 131803506 -20733753 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1590 681 237 25 17 chr5 131803506 131803662 -20733597 - B3A SINE B2 -26 169 10 8 1590 1076 71 29 0 chr5 131803662 131803802 -20733457 + B1_Mus1 SINE Alu 1 144 -4 8 1590 390 69 0 0 chr5 131803802 131803860 -20733399 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1590 24 77 0 0 chr5 131803890 131803942 -20733317 + AT_rich Low_complexity Low_complexity 1 52 0 8 1590 307 213 66 0 chr5 131804007 131804068 -20733191 + ID4_ SINE ID 1 65 -18 8 1590 415 252 115 29 chr5 131804241 131804380 -20732879 - RSINE1 SINE B4 0 165 15 8 1590 26 53 0 17 chr5 131804394 131804424 -20732835 + AT_rich Low_complexity Low_complexity 1 30 0 8 1590 930 256 0 9 chr5 131804424 131804637 -20732622 - B3 SINE B2 -4 212 2 8 1590 26 53 0 17 chr5 131804637 131804664 -20732595 + AT_rich Low_complexity Low_complexity 1 27 0 8 1590 245 115 0 175 chr5 131805170 131805233 -20732026 + B3 SINE B2 158 209 -7 8 1590 402 238 250 15 chr5 131805303 131805329 -20731930 - RSINE1 SINE B4 0 165 140 8 1590 891 134 0 0 chr5 131805329 131805508 -20731751 + (TC)n Simple_repeat Simple_repeat 2 180 0 8 1590 423 0 0 0 chr5 131805508 131805554 -20731705 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1590 402 238 250 15 chr5 131805554 131805658 -20731601 - RSINE1 SINE B4 -26 139 4 8 1590 293 206 0 45 chr5 131805793 131805859 -20731400 + PB1D10 SINE Alu 53 115 -2 8 1590 609 295 34 28 chr5 131805861 131806039 -20731220 + B4A SINE B4 1 179 -113 8 1590 261 289 30 30 chr5 131806343 131806438 -20730821 + B4A SINE B4 2 96 -196 8 1590 1177 77 0 12 chr5 131806438 131806608 -20730651 + B2_Mm2 SINE B2 1 168 -27 8 1590 408 322 51 38 chr5 131806661 131806819 -20730440 + B4A SINE B4 107 266 -26 8 1590 393 22 0 0 chr5 131806879 131806925 -20730334 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1590 867 270 9 30 chr5 131807813 131808042 -20729217 + ZP3AR Satellite Satellite 1 224 -1 8 1590 225 0 0 0 chr5 131808042 131808067 -20729192 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1590 638 275 39 49 chr5 131808067 131808109 -20729150 + ZP3AR Satellite Satellite 157 200 -12 8 1590 929 166 151 5 chr5 131808111 131808317 -20728942 + MTEa LTR MaLR 144 379 0 8 1590 679 193 34 7 chr5 131808415 131808561 -20728698 + B1_Mur4 SINE Alu 1 150 0 8 1590 468 315 100 33 chr5 131808835 131809045 -20728214 + B4 SINE B4 48 271 -21 8 1590 546 266 58 109 chr5 131809602 131810039 -20727220 - MTD LTR MaLR -17 402 1 8 1590 459 0 0 0 chr5 131810138 131810189 -20727070 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1590 660 245 129 43 chr5 131810782 131811038 -20726221 + B4 SINE B4 3 280 -12 8 1590 1095 94 0 0 chr5 131811091 131811271 -20725988 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1590 253 286 41 0 chr5 131811303 131811401 -20725858 - Lx7 LINE L1 0 7696 7595 8 1590 207 0 0 0 chr5 131811407 131811430 -20725829 + (TC)n Simple_repeat Simple_repeat 1 23 0 8 1590 981 239 97 46 chr5 131811470 131811820 -20725439 - Lx7 LINE L1 -278 7418 7051 8 1590 24 53 0 0 chr5 131811841 131811879 -20725380 + AT_rich Low_complexity Low_complexity 1 38 0 8 1590 279 286 65 0 chr5 131811914 131811991 -20725268 - B1F SINE Alu 0 149 68 8 1590 525 241 84 181 chr5 131812400 131812673 -20724586 - B4A SINE B4 -22 270 26 8 1590 2091 129 98 6 chr5 131812673 131813009 -20724250 + ORR1B2 LTR MaLR 1 367 0 8 1590 525 241 84 181 chr5 131813009 131813034 -20724225 - B4A SINE B4 -267 25 1 8 1590 245 340 29 10 chr5 131813175 131813279 -20723980 + MER5A DNA MER1_type 83 188 -1 8 1590 450 261 216 28 chr5 131813575 131813756 -20723503 - B3A SINE B2 0 216 2 8 1590 377 318 38 25 chr5 131813899 131814057 -20723202 - RSINE1 SINE B4 -4 161 2 9 1590 338 281 19 19 chr5 131814058 131814163 -20723096 - PB1D10 SINE Alu -1 116 12 9 1590 271 288 12 0 chr5 131814271 131814351 -20722908 - PB1D9 SINE Alu -10 110 30 9 1590 716 239 55 124 chr5 131814534 131814735 -20722524 - B3A SINE B2 -8 187 1 9 1590 413 248 132 31 chr5 131814845 131814974 -20722285 - RSINE1 SINE B4 -21 144 3 9 1590 565 296 13 7 chr5 131815114 131815267 -20721992 + B4 SINE B4 1 154 -138 9 1590 988 262 212 50 chr5 131815352 131815994 -20721265 + RMER13A LTR ERVK 115 860 0 9 1590 482 270 17 121 chr5 131815994 131816147 -20721112 + B4 SINE B4 158 292 0 9 1590 399 308 46 0 chr5 131816228 131816358 -20720901 + B1F SINE Alu 5 140 -9 9 1590 751 139 0 7 chr5 131816398 131816543 -20720716 + ZP3AR Satellite Satellite 15 158 -54 9 1590 213 222 0 65 chr5 131816480 131816557 -20720702 + ID4 SINE ID 1 72 -11 9 1590 39424 3 0 0 chr5 131816557 131821882 -20715377 + L1Md_A LINE L1 261 5586 -297 9 1590 9187 1 2 0 chr5 131821882 131822876 -20714383 + L1Md_A LINE L1 5587 6582 0 9 1590 870 50 0 0 chr5 131822884 131823005 -20714254 + ZP3AR Satellite Satellite 28 148 -64 9 1590 273 292 14 0 chr5 131823020 131823092 -20714167 + ID4_ SINE ID 2 74 -9 9 1590 1089 217 5 0 chr5 131823460 131823677 -20713582 + ID_B1 SINE B4 2 219 -5 9 1590 275 192 0 244 chr5 131824425 131824556 -20712703 - ID_B1 SINE B4 -48 176 78 9 1590 532 234 26 46 chr5 131824688 131824840 -20712419 + B1F SINE Alu 1 149 0 9 1590 517 333 58 0 chr5 131824863 131825037 -20712222 + B3A SINE B2 5 188 -10 9 1590 222 282 52 78 chr5 131825051 131825075 -20712184 + ID4 SINE ID 7 81 -2 9 1590 252 283 0 0 chr5 131825075 131825128 -20712131 + ID SINE ID 30 82 -142 9 1590 823 208 28 50 chr5 131825249 131825286 -20711973 - MTD LTR MaLR -239 180 144 9 1590 1231 162 13 31 chr5 131825286 131825515 -20711744 - URR1B DNA MER1_type 0 225 1 9 1590 823 208 28 50 chr5 131825515 131825659 -20711600 - MTD LTR MaLR -276 143 3 9 1590 278 250 74 32 chr5 131825667 131825762 -20711497 + PB1D10 SINE Alu 18 116 -1 9 1590 371 287 60 17 chr5 131827032 131827149 -20710110 + RSINE1 SINE B4 44 165 0 9 1590 501 141 0 0 chr5 131827212 131827311 -20709948 + (TA)n Simple_repeat Simple_repeat 2 100 0 9 1590 224 225 0 66 chr5 131827330 131827406 -20709853 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 9 1590 423 38 0 0 chr5 131827436 131827489 -20709770 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1590 429 298 58 32 chr5 131828011 131828167 -20709092 + RSINE1 SINE B4 5 164 -1 9 1590 21 0 0 0 chr5 131828169 131828190 -20709069 + AT_rich Low_complexity Low_complexity 1 21 0 9 1590 378 0 0 0 chr5 131828347 131828389 -20708870 + (TG)n Simple_repeat Simple_repeat 2 43 0 9 1590 595 286 67 24 chr5 131828423 131828631 -20708628 + B4A SINE B4 5 221 -71 9 1590 27224 115 56 15 chr5 131828725 131830055 -20707204 + Lx5 LINE L1 1203 2633 -3244 9 1590 318 67 0 0 chr5 131830055 131830100 -20707159 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1590 27224 113 55 13 chr5 131830100 131833348 -20703911 + Lx5 LINE L1 2634 5985 -1073 9 1590 3766 166 84 6 chr5 131833355 131834046 -20703213 + Lx5 LINE L1 6289 7033 -17 9 1590 511 280 41 36 chr5 131834090 131834286 -20702973 - RMER15 LTR ERVL -65 510 314 9 1590 459 52 0 0 chr5 131834515 131834573 -20702686 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1590 414 0 0 0 chr5 131834573 131834618 -20702641 + (GA)n Simple_repeat Simple_repeat 2 47 0 9 1590 276 311 144 29 chr5 131835296 131835435 -20701824 + MLT1N2 LTR MaLR 4 158 -404 9 1590 821 234 60 72 chr5 131835668 131835917 -20701342 - MTEa LTR MaLR -2 377 132 9 1590 309 293 13 0 chr5 131835962 131836037 -20701222 - MTEa LTR MaLR -230 149 74 9 1590 668 295 68 36 chr5 131836037 131836318 -20700941 + B4A SINE B4 1 290 -2 9 1590 679 237 73 15 chr5 131836395 131836562 -20700697 + B3A SINE B2 1 160 -38 9 1590 204 40 0 0 chr5 131836562 131836587 -20700672 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1590 460 260 70 91 chr5 131836587 131836618 -20700641 + B2_Mm2 SINE B2 158 194 -1 9 1590 312 236 0 14 chr5 131836615 131836688 -20700571 - MTEa LTR MaLR -306 73 2 9 1590 531 171 26 26 chr5 131836848 131836962 -20700297 + MLT1A1 LTR MaLR 1 114 -294 9 1590 489 295 97 17 chr5 131837002 131837178 -20700081 + MLT1A1 LTR MaLR 219 408 0 9 1590 22 56 0 0 chr5 131837288 131837324 -20699935 + AT_rich Low_complexity Low_complexity 1 36 0 9 1590 273 282 35 0 chr5 131837447 131837532 -20699727 - MLT1D LTR MaLR 0 505 418 9 1590 373 200 41 72 chr5 131837808 131837905 -20699354 + B4 SINE B4 8 101 -191 9 1590 524 231 37 0 chr5 131837894 131838002 -20699257 + RSINE1 SINE B4 8 119 -46 9 1590 775 261 19 60 chr5 131838086 131838302 -20698957 + B4 SINE B4 83 289 -3 9 1590 504 348 11 0 chr5 131838831 131839009 -20698250 + GA-rich Low_complexity Low_complexity 1 180 0 9 1590 331 294 89 45 chr5 131839017 131839276 -20697983 + HAL1-3A_ME LINE L1 2284 2439 -419 9 1590 590 260 62 6 chr5 131839296 131839474 -20697785 - Charlie1a DNA MER1_type -5 1450 1263 9 1590 687 227 15 0 chr5 131839535 131839667 -20697592 - ID_B1 SINE B4 -9 215 82 9 1590 187 245 139 56 chr5 131839691 131839799 -20697460 + MIRb SINE MIR 34 150 -118 9 1590 975 286 11 31 chr5 131840023 131840283 -20696976 - B4 SINE B4 -1 291 37 9 1590 1813 137 68 85 chr5 131840290 131840642 -20696617 + ORR1B1 LTR MaLR 41 386 -8 9 1590 255 323 15 0 chr5 131840681 131840746 -20696513 - MER5A DNA MER1_type -122 67 2 9 1590 671 188 0 8 chr5 131840799 131840917 -20696342 + PB1D10 SINE Alu 1 117 0 9 1590 975 206 39 24 chr5 131841249 131841490 -20695769 - ZP3AR Satellite Satellite -23 244 1 9 1590 938 189 30 64 chr5 131841785 131841988 -20695271 + B3A SINE B2 3 198 0 9 1590 309 109 0 0 chr5 131842521 131842567 -20694692 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1590 731 206 146 42 chr5 131842596 131842788 -20694471 + B4 SINE B4 81 292 0 9 1590 273 57 0 0 chr5 131842834 131842869 -20694390 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1590 449 0 132 0 chr5 131843272 131843393 -20693866 + (TCCC)n Simple_repeat Simple_repeat 2 138 0 9 1590 305 292 62 10 chr5 131843790 131843887 -20693372 - MTE2a LTR MaLR -14 365 264 9 1590 374 253 0 0 chr5 131843920 131843999 -20693260 + ID4 SINE ID 1 79 -4 9 1590 531 219 40 52 chr5 131844001 131844013 -20693246 - HAL1-2a_MD LINE L1 -509 2515 2502 9 1590 425 221 0 0 chr5 131844013 131844090 -20693169 + ID4_ SINE ID 3 79 -4 9 1590 531 219 40 52 chr5 131844090 131844250 -20693009 - HAL1-2a_MD LINE L1 -523 2501 2345 9 1590 391 238 0 12 chr5 131844289 131844370 -20692889 + ID4 SINE ID 1 80 -3 9 1590 205 156 22 22 chr5 131844370 131844416 -20692843 + (TTAA)n Simple_repeat Simple_repeat 3 48 0 9 1590 449 241 93 50 chr5 131844480 131844620 -20692639 - RSINE1 SINE B4 -8 157 12 9 1590 795 177 8 0 chr5 131844679 131844809 -20692450 - B1_Mur2 SINE Alu -9 140 10 9 1590 229 306 0 0 chr5 131845096 131845158 -20692101 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1590 219 239 0 0 chr5 131845194 131845261 -20691998 + (CA)n Simple_repeat Simple_repeat 2 68 0 9 1590 227 306 0 0 chr5 131845289 131845351 -20691908 + (CA)n Simple_repeat Simple_repeat 1 62 0 9 1590 325 102 0 33 chr5 131845527 131845588 -20691671 + (TCTCCC)n Simple_repeat Simple_repeat 2 60 0 9 1590 859 235 14 156 chr5 131845659 131845941 -20691318 - MTE2a LTR MaLR -128 251 10 9 1590 528 202 64 0 chr5 131846089 131846183 -20691076 - PB1D10 SINE Alu -9 108 9 9 1590 245 331 7 7 chr5 131846202 131846339 -20690920 - L1M5 LINE L1 -2983 3163 3027 9 1590 379 300 0 0 chr5 131846616 131846696 -20690563 - ID4_ SINE ID -1 82 3 9 1590 255 237 34 4 chr5 131846719 131846798 -20690461 - B1_Mur4 SINE Alu -2 145 64 9 1590 328 250 0 65 chr5 131846807 131846884 -20690375 - B1_Mur1 SINE Alu -13 136 65 9 1590 408 263 58 17 chr5 131846879 131846999 -20690260 - B1F1 SINE Alu -22 127 3 9 1590 300 338 0 0 chr5 131847773 131847844 -20689415 - ID2 SINE ID -1 82 12 9 1590 246 317 0 109 chr5 131847816 131847908 -20689351 - ZP3AR Satellite Satellite -78 134 53 9 1590 265 272 31 19 chr5 131848184 131848345 -20688914 + (TA)n Simple_repeat Simple_repeat 2 164 0 9 1590 541 330 71 58 chr5 131848503 131848812 -20688447 - ORR1E LTR MaLR -4 355 43 9 1590 936 302 38 24 chr5 131849227 131849515 -20687744 - B4A SINE B4 0 292 1 9 1590 38 0 0 0 chr5 131849594 131849632 -20687627 + AT_rich Low_complexity Low_complexity 1 38 0 9 1590 1074 105 0 0 chr5 131849965 131850326 -20686933 + (TG)n Simple_repeat Simple_repeat 1 361 0 9 1590 410 312 71 16 chr5 131850331 131850458 -20686801 - RSINE1 SINE B4 -28 137 4 9 1590 502 330 94 39 chr5 131850564 131850847 -20686412 - B4 SINE B4 -11 281 4 9 1590 690 254 7 27 chr5 131851175 131851321 -20685938 + RSINE1 SINE B4 4 146 -19 9 1590 892 226 14 41 chr5 131851475 131851696 -20685563 + B3 SINE B2 2 216 0 9 1590 324 116 0 0 chr5 131851781 131851824 -20685435 + HAL1-3A_ME LINE L1 1976 2018 -840 9 1590 1076 30 46 0 chr5 131851982 131852113 -20685146 + B1_Mus2 SINE Alu 3 139 -8 9 1590 278 26 26 0 chr5 131852322 131852361 -20684898 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 9 1590 694 224 13 13 chr5 131852402 131852551 -20684708 + B1_Mur1 SINE Alu 1 149 0 9 1590 1760 202 53 3 chr5 131852681 131853019 -20684240 + MTEa LTR MaLR 13 367 -12 9 1590 287 164 16 0 chr5 131853481 131853542 -20683717 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 1590 874 209 28 0 chr5 131853622 131853799 -20683460 - B3A SINE B2 -16 182 1 9 1590 379 301 9 37 chr5 131854005 131854112 -20683147 - ID_B1 SINE B4 0 224 121 9 1590 531 0 0 0 chr5 131854138 131854197 -20683062 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1590 938 307 35 49 chr5 131854274 131854562 -20682697 - B4A SINE B4 0 292 9 9 1590 420 278 34 17 chr5 131854613 131854730 -20682529 - PB1D7 SINE Alu -1 119 1 9 1590 343 233 0 14 chr5 131854836 131854910 -20682349 - ID4_ SINE ID -9 74 2 9 1590 518 258 144 70 chr5 131855003 131855274 -20681985 + B4A SINE B4 2 292 0 9 1590 300 366 12 24 chr5 131855275 131855440 -20681819 + (CATG)n Simple_repeat Simple_repeat 1 163 0 1 1590 243 146 0 0 chr5 131856155 131856196 -20681063 + (CTG)n Simple_repeat Simple_repeat 1 41 0 1 1590 646 244 8 0 chr5 131856196 131856323 -20680936 - B4 SINE B4 -69 223 96 1 1590 262 80 40 0 chr5 131856348 131856398 -20680861 + (TA)n Simple_repeat Simple_repeat 2 53 0 1 1590 540 256 84 53 chr5 131856415 131856605 -20680654 - B3A SINE B2 -2 196 1 1 1590 310 236 34 0 chr5 131856611 131856700 -20680559 - B4A SINE B4 -200 92 1 1 1590 231 36 0 0 chr5 131856765 131856793 -20680466 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1590 936 233 23 50 chr5 131857154 131857375 -20679884 - B3A SINE B2 0 216 2 1 1590 312 266 54 61 chr5 131857382 131857530 -20679729 - LTR77 LTR ERV1 -103 519 373 1 1590 518 226 45 28 chr5 131857779 131857912 -20679347 - ZP3AR Satellite Satellite -52 135 1 1 198 630 278 141 31 chr5 131858391 131858647 -20678612 - RMER15 LTR ERVL -18 557 274 1 1591 244 238 136 71 chr5 131858654 131858794 -20678465 - RMER15 LTR ERVL -426 149 1 1 1591 556 292 44 52 chr5 131858803 131858996 -20678263 - ID_B1 SINE B4 -67 225 39 1 1591 1480 86 10 2 chr5 131859784 131860112 -20677147 - ZP3AR Satellite Satellite -35 330 1 1 1591 393 216 193 0 chr5 131860112 131860200 -20677059 - MTEa LTR MaLR -274 105 1 1 1591 411 337 45 48 chr5 131860249 131860539 -20676720 + B4A SINE B4 2 290 -2 1 1591 309 218 0 0 chr5 131860539 131860617 -20676642 + (CATG)n Simple_repeat Simple_repeat 1 78 0 1 1591 308 169 79 67 chr5 131860635 131860724 -20676535 + L1MEg LINE L1 1800 1889 -4195 1 1591 215 342 42 34 chr5 131861078 131861196 -20676063 + MIRc SINE MIR 144 262 -6 1 1591 379 248 115 39 chr5 131861432 131861562 -20675697 - RMER10A LTR ERVL -30 412 273 1 1591 1285 254 35 11 chr5 131861939 131862225 -20675034 + ORR1E LTR MaLR 4 296 -63 1 1591 441 54 0 0 chr5 131862269 131862325 -20674934 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1591 689 265 25 50 chr5 131862328 131862397 -20674862 - B4 SINE B4 -18 274 206 1 1591 2501 162 19 12 chr5 131862397 131862815 -20674444 - MTC LTR MaLR 0 421 1 1 1591 689 265 25 50 chr5 131862815 131862944 -20674315 - B4 SINE B4 -87 205 81 1 1591 439 168 79 9 chr5 131862952 131863066 -20674193 - Lx9 LINE L1 -1 7643 7522 1 1591 311 80 40 0 chr5 131863072 131863122 -20674137 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1 1591 306 291 0 23 chr5 131863126 131863214 -20674045 - B4 SINE B4 -205 87 2 1 1591 291 284 74 0 chr5 131863612 131863707 -20673552 + PB1D10 SINE Alu 1 102 -15 1 1591 1023 110 6 17 chr5 131863713 131863889 -20673370 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 1 1591 1127 288 62 22 chr5 131864638 131864958 -20672301 - MTEa LTR MaLR -45 334 2 1 1591 1072 256 64 78 chr5 131865208 131865568 -20671691 + MTE2a LTR MaLR 19 373 -6 1 1591 274 256 87 22 chr5 131865575 131865667 -20671592 - B1F1 SINE Alu -51 98 1 1 1591 404 37 0 18 chr5 131865708 131865763 -20671496 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1591 495 0 0 0 chr5 131866585 131866640 -20670619 + (TC)n Simple_repeat Simple_repeat 1 55 0 1 1591 924 256 87 38 chr5 131866641 131866702 -20670557 - B4 SINE B4 -12 280 208 1 1591 519 17 0 0 chr5 131866702 131866762 -20670497 + (TC)n Simple_repeat Simple_repeat 1 60 0 1 1591 924 256 87 38 chr5 131866762 131866964 -20670295 - B4 SINE B4 -85 207 6 1 1591 1398 249 30 65 chr5 131867421 131867791 -20669468 - ORR1E LTR MaLR -2 357 1 1 1591 342 306 194 76 chr5 131867846 131868150 -20669109 + ORR1E LTR MaLR 20 359 0 1 1591 303 28 0 0 chr5 131868252 131868288 -20668971 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1591 1515 222 105 3 chr5 131868290 131868479 -20668780 + MTD LTR MaLR 1 207 -212 1 1591 348 43 0 0 chr5 131868479 131868525 -20668734 + (CAGA)n Simple_repeat Simple_repeat 4 49 0 1 1591 1515 222 105 3 chr5 131868525 131868715 -20668544 + MTD LTR MaLR 208 419 0 1 1591 206 254 18 0 chr5 131868716 131868771 -20668488 + (TATATG)n Simple_repeat Simple_repeat 1 56 0 1 1591 1426 78 15 30 chr5 131868784 131868982 -20668277 - B2_Mm2 SINE B2 0 195 1 1 1591 275 314 103 65 chr5 131869020 131869204 -20668055 - B3A SINE B2 -6 192 2 1 1591 528 278 30 0 chr5 131869239 131869372 -20667887 + RSINE1 SINE B4 3 139 -26 1 1591 312 48 0 0 chr5 131869375 131869417 -20667842 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1591 1408 138 11 11 chr5 131869763 131870014 -20667245 - ZP3AR Satellite Satellite -21 251 1 1 1591 479 260 149 10 chr5 131870563 131870757 -20666502 + ID_B1 SINE B4 3 223 -1 1 1591 285 214 31 31 chr5 131870773 131870903 -20666356 + GA-rich Low_complexity Low_complexity 4 133 0 1 1591 305 257 174 0 chr5 131872475 131872584 -20664675 + ID_B1 SINE B4 44 171 -53 1 1591 190 160 20 20 chr5 131872728 131872779 -20664480 + GA-rich Low_complexity Low_complexity 3 53 0 1 1591 423 219 20 30 chr5 131872848 131872947 -20664312 - B1F SINE Alu -50 99 2 1 1591 369 323 127 86 chr5 131872949 131873240 -20664019 - ORR1E LTR MaLR -34 325 23 1 1591 758 187 56 58 chr5 131873271 131873492 -20663767 - MTE2a LTR MaLR 0 379 162 1 1591 198 0 0 0 chr5 131873502 131873524 -20663735 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1 1591 1117 88 7 0 chr5 131873563 131873710 -20663549 - B1_Mus1 SINE Alu 0 148 1 1 1591 594 282 11 45 chr5 131873716 131873916 -20663343 - MTE2a LTR MaLR -244 175 2 1 1591 981 213 29 24 chr5 131873919 131874126 -20663133 + B3 SINE B2 4 211 -5 1 1591 280 234 39 13 chr5 131874252 131874330 -20662929 + L1M5 LINE L1 5692 5771 -469 1 1591 472 291 40 0 chr5 131874458 131874621 -20662638 + ID_B1 SINE B4 41 211 -13 1 1591 441 0 0 0 chr5 131874621 131874670 -20662589 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1591 237 250 14 81 chr5 131874813 131874825 -20662434 - ZP3AR Satellite Satellite -106 106 96 1 1591 417 259 0 0 chr5 131874825 131874906 -20662353 - ID4_ SINE ID -2 81 1 1 1591 237 250 14 81 chr5 131874906 131874967 -20662292 - ZP3AR Satellite Satellite -117 95 38 1 1591 503 70 0 14 chr5 131875554 131875627 -20661632 + (TCC)n Simple_repeat Simple_repeat 3 74 0 1 1591 660 13 0 0 chr5 131875723 131875800 -20661459 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 1591 717 183 195 21 chr5 131876064 131876254 -20661005 + ID_B1 SINE B4 1 223 -1 1 1591 196 310 34 45 chr5 131876430 131876518 -20660741 - L2b LINE L2 -3 3372 3286 1 1591 248 369 85 24 chr5 131876518 131876682 -20660577 - MLT1K LTR MaLR -3 592 419 1 1591 1174 246 115 41 chr5 131876746 131877085 -20660174 - ORR1D2 LTR MaLR 0 370 7 1 1591 905 245 159 65 chr5 131877088 131877421 -20659838 + MTE2a LTR MaLR 52 405 -14 1 1591 446 287 62 8 chr5 131877924 131878054 -20659205 + B3A SINE B2 9 145 -53 1 1591 270 0 0 0 chr5 131878062 131878092 -20659167 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1591 531 294 42 7 chr5 131878125 131878269 -20658990 - RSINE1 SINE B4 -14 151 3 1 1591 693 244 60 22 chr5 131878708 131878892 -20658367 - ID_B1 SINE B4 -31 193 3 1 1591 733 306 92 8 chr5 131879722 131879972 -20657287 + B4A SINE B4 2 272 -20 1 1591 396 0 0 0 chr5 131879988 131880032 -20657227 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1591 432 259 34 51 chr5 131880097 131880215 -20657044 + ID_B1 SINE B4 49 164 -60 1 1591 459 184 0 54 chr5 131880136 131880228 -20657031 + PB1D10 SINE Alu 10 96 -21 1 1591 1044 271 83 45 chr5 131880260 131880596 -20656663 + MTEa LTR MaLR 1 349 -30 1 1591 4455 179 49 32 chr5 131880624 131881543 -20655716 - RMER19B LTR ERVK -12 890 20 1 1591 589 211 106 28 chr5 131881551 131881731 -20655528 - B3A SINE B2 -4 194 1 1 1591 314 374 61 54 chr5 131881768 131881915 -20655344 - MER119 DNA MER1_type -131 452 305 1 1591 440 240 44 39 chr5 131881966 131882082 -20655177 - B1F1 SINE Alu -20 130 9 1 1591 334 317 33 16 chr5 131881975 131882097 -20655162 - B4 SINE B4 -89 203 80 1 1591 882 95 79 0 chr5 131882130 131882256 -20655003 - B1_Mur4 SINE Alu -6 144 9 1 1591 22 0 0 0 chr5 131882273 131882295 -20654964 + AT_rich Low_complexity Low_complexity 1 22 0 1 1591 1389 62 45 0 chr5 131882296 131882472 -20654787 + B2_Mm2 SINE B2 1 184 -11 1 1591 316 202 18 132 chr5 131882473 131882701 -20654558 - Lx9 LINE L1 -24 7620 7419 1 1591 3914 208 9 42 chr5 131882676 131883518 -20653741 - Lx9 LINE L1 -127 7517 6703 1 1591 680 261 30 8 chr5 131883583 131883777 -20653482 + B3A SINE B2 1 185 -10 1 1591 198 0 0 0 chr5 131883840 131883862 -20653397 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1591 198 0 0 0 chr5 131884263 131884285 -20652974 + (CA)n Simple_repeat Simple_repeat 1 22 0 1 1591 1567 262 86 30 chr5 131884295 131884737 -20652522 + L1M3 LINE L1 3292 3734 -2412 1 1591 450 0 0 0 chr5 131884737 131884787 -20652472 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1591 1567 254 86 29 chr5 131884787 131884969 -20652290 + L1M3 LINE L1 3729 3941 -2199 1 1591 311 116 0 0 chr5 131884989 131885032 -20652227 - ERVL-B4-int LTR ERVL -1248 4466 4424 1 1591 375 353 14 50 chr5 131885123 131885263 -20651996 + RSINE1 SINE B4 31 165 0 1 1591 328 88 20 81 chr5 131885264 131885363 -20651896 + (CAGAGA)n Simple_repeat Simple_repeat 2 94 0 1 1591 355 253 0 0 chr5 131885393 131885480 -20651779 + ERVL-B4-int LTR ERVL 962 1048 -4666 1 1591 321 268 153 8 chr5 131885495 131885619 -20651640 + L1MD LINE L1 5635 5776 -583 1 1591 26 0 0 0 chr5 131885723 131885749 -20651510 + AT_rich Low_complexity Low_complexity 1 26 0 1 1591 432 0 0 0 chr5 131886042 131886090 -20651169 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1591 410 237 79 71 chr5 131886094 131886221 -20651038 + ID_B1 SINE B4 84 211 -13 1 1591 246 62 0 0 chr5 131886228 131886260 -20650999 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1 1591 245 300 14 28 chr5 131886386 131886458 -20650801 + RSINE1 SINE B4 70 140 -25 1 1591 288 111 0 0 chr5 131886467 131886512 -20650747 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1591 25 51 0 0 chr5 131886517 131886556 -20650703 + AT_rich Low_complexity Low_complexity 1 39 0 1 1591 310 224 38 38 chr5 131886623 131886702 -20650557 + B4 SINE B4 15 93 -199 1 1591 2476 147 47 7 chr5 131886702 131887106 -20650153 - MTC LTR MaLR -1 420 1 1 1591 5993 149 72 38 chr5 131887106 131887344 -20649915 - MTC-int LTR MaLR 0 1258 1013 1 1591 270 0 0 0 chr5 131887344 131887374 -20649885 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1 1591 5993 149 72 38 chr5 131887374 131888350 -20648909 - MTC-int LTR MaLR -246 1012 3 1 1591 2891 123 2 5 chr5 131888356 131888771 -20648488 - MTC LTR MaLR -7 414 1 1 1591 373 238 117 19 chr5 131888847 131888950 -20648309 + B4A SINE B4 179 291 -1 1 1591 305 111 37 0 chr5 131888950 131889004 -20648255 + (CACG)n Simple_repeat Simple_repeat 4 59 0 1 1591 1038 106 50 6 chr5 131889348 131889509 -20647750 - URR1A DNA MER1_type 0 226 59 1 1591 275 292 127 131 chr5 131889516 131889918 -20647341 + MLT1A1 LTR MaLR 12 400 -8 1 1591 333 279 125 0 chr5 131890283 131890387 -20646872 + MTEa LTR MaLR 1 117 -262 1 1591 1155 265 0 4 chr5 131890574 131890813 -20646446 + MTD LTR MaLR 13 250 -169 1 1591 819 40 0 0 chr5 131890812 131890913 -20646346 + B1_Mm SINE Alu 47 147 0 1 1591 842 190 49 0 chr5 131890918 131891081 -20646178 + MTD LTR MaLR 235 405 -14 1 1591 266 303 68 16 chr5 131891325 131891480 -20645779 + MLT1A1-int LTR MaLR 44 194 -1176 1 1591 1697 271 151 82 chr5 131891502 131892322 -20644937 + MLT1A1-int LTR MaLR 353 1231 -27 1 1591 519 66 0 0 chr5 131892322 131892398 -20644861 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1591 1205 224 44 113 chr5 131892399 131892761 -20644498 + MTD LTR MaLR 46 382 -37 1 1591 780 268 117 32 chr5 131894138 131894385 -20642874 + B4 SINE B4 15 282 -10 1 1591 188 67 33 0 chr5 131894388 131894418 -20642841 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1591 401 327 10 0 chr5 131894420 131894524 -20642735 + B4 SINE B4 184 288 -4 1 1591 405 58 0 0 chr5 131894540 131894592 -20642667 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1591 660 194 0 0 chr5 131894735 131894874 -20642385 + CT-rich Low_complexity Low_complexity 3 141 0 1 1591 783 309 0 89 chr5 131894884 131895119 -20642140 + B3A SINE B2 3 216 0 1 1591 222 296 0 0 chr5 131895146 131895200 -20642059 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1591 498 238 180 47 chr5 131895838 131895870 -20641389 + ID_B1 SINE B4 53 222 -2 1 1591 689 229 0 0 chr5 131895870 131895988 -20641271 + PB1D7 SINE Alu 1 118 -2 1 1591 271 236 0 0 chr5 131896021 131896073 -20641186 + B1F2 SINE Alu 2 53 -96 1 1591 294 303 100 57 chr5 131896073 131896213 -20641046 + B4 SINE B4 2 147 -145 1 1591 329 226 0 0 chr5 131896256 131896318 -20640941 - B4A SINE B4 -13 279 218 1 1591 939 271 19 5 chr5 131896355 131896570 -20640689 - B4A SINE B4 -73 219 2 1 1591 376 312 45 0 chr5 131896584 131896628 -20640631 - PB1D10 SINE Alu 0 117 72 1 1591 1897 198 54 62 chr5 131896628 131897161 -20640098 - RLTR24 LTR ERV1 0 529 1 1 1591 376 312 45 0 chr5 131897161 131897228 -20640031 - PB1D10 SINE Alu -46 71 2 1 1591 357 43 0 0 chr5 131897249 131897296 -20639963 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1591 393 337 0 0 chr5 131897715 131897816 -20639443 + B4A SINE B4 1 101 -191 1 1591 295 171 13 13 chr5 131897821 131897898 -20639361 + G-rich Low_complexity Low_complexity 1 77 0 1 1591 393 183 106 6 chr5 131897905 131898002 -20639257 + B4A SINE B4 126 220 -72 1 1591 860 249 21 17 chr5 131898063 131898296 -20638963 + Lx8 LINE L1 6851 7084 -389 1 1591 236 330 10 0 chr5 131898460 131898560 -20638699 + Lx8 LINE L1 7352 7452 -21 1 1591 512 65 13 0 chr5 131898597 131898674 -20638585 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1591 679 219 72 24 chr5 131898678 131898870 -20638389 + B3A SINE B2 5 187 -8 1 1591 316 300 165 77 chr5 131898870 131898938 -20638321 + B4A SINE B4 5 287 -5 1 1591 321 189 60 86 chr5 131899270 131899386 -20637873 + MT2B LTR ERVL 145 257 -344 1 1591 705 172 0 0 chr5 131899308 131899424 -20637835 + B1_Mur4 SINE Alu 28 143 -7 1 1591 427 206 0 27 chr5 131899500 131899685 -20637574 + (TA)n Simple_repeat Simple_repeat 1 180 0 1 1591 304 218 0 0 chr5 131899939 131899994 -20637265 - MTE2a LTR MaLR -72 349 295 1 1591 551 260 8 45 chr5 131900319 131900452 -20636807 + B4A SINE B4 6 133 -159 1 1591 2009 149 99 25 chr5 131900832 131901224 -20636035 - MTC LTR MaLR 0 421 1 1 1591 240 222 178 14 chr5 131901269 131901342 -20635917 + B4 SINE B4 197 281 -11 1 1591 290 156 0 15 chr5 131901359 131901424 -20635835 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1591 22 80 0 0 chr5 131901427 131901477 -20635782 + AT_rich Low_complexity Low_complexity 1 50 0 1 1591 311 266 24 110 chr5 131901477 131901604 -20635655 + PB1D10 SINE Alu 1 116 -1 1 1591 256 248 66 69 chr5 131901723 131901827 -20635432 - MT2A LTR ERVL -1 600 474 1 1591 903 315 68 20 chr5 131901848 131902143 -20635116 - MT2A LTR ERVL -162 371 63 1 1591 338 241 30 121 chr5 131902062 131902161 -20635098 - MTE2a LTR MaLR -233 146 57 1 1591 303 341 0 11 chr5 131902213 131902302 -20634957 - L1MEg LINE L1 -4114 1970 1883 1 1591 700 222 96 29 chr5 131902302 131902511 -20634748 - ID_B1 SINE B4 0 224 2 1 1591 459 95 0 0 chr5 131903296 131903370 -20633889 + (TC)n Simple_repeat Simple_repeat 1 74 0 1 1591 674 281 5 43 chr5 131903378 131903564 -20633695 + MLT1A0 LTR MaLR 44 222 -143 1 1591 316 212 133 30 chr5 131903791 131903901 -20633358 + B1F SINE Alu 2 136 -13 1 1591 210 37 0 0 chr5 131903901 131903928 -20633331 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1591 316 209 106 32 chr5 131903928 131903942 -20633317 + B1F SINE Alu 137 148 -1 1 1591 1576 150 279 86 chr5 131904290 131904734 -20632525 + MT2A LTR ERVL 1 530 -3 1 1591 1330 97 0 0 chr5 131904905 131905090 -20632169 + ZP3AR Satellite Satellite 14 198 -14 1 1591 232 222 63 0 chr5 131905040 131905103 -20632156 + ID4_ SINE ID 1 67 -16 1 1591 233 316 13 13 chr5 131905110 131905187 -20632072 + ID4_ SINE ID 7 83 0 1 1591 198 148 0 53 chr5 131905493 131905550 -20631709 + G-rich Low_complexity Low_complexity 3 56 0 1 1591 213 39 0 0 chr5 131906401 131906427 -20630832 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1591 343 238 167 76 chr5 131906839 131906853 -20630406 + B4 SINE B4 72 128 -164 1 1591 695 50 160 0 chr5 131906853 131906953 -20630306 + B1_Mm SINE Alu 1 116 -31 1 1591 343 238 167 76 chr5 131906953 131906971 -20630288 + B4 SINE B4 129 215 -77 1 1591 1129 34 5 63 chr5 131907263 131907454 -20629805 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1591 267 103 0 0 chr5 131907454 131907493 -20629766 + (TAGG)n Simple_repeat Simple_repeat 1 39 0 1 1591 2339 78 56 0 chr5 131907493 131907799 -20629460 - ORR1A2 LTR MaLR 0 327 5 1 1591 627 130 0 0 chr5 131908364 131908464 -20628795 + (TCCC)n Simple_repeat Simple_repeat 3 102 0 1 1591 320 159 116 0 chr5 131908469 131908538 -20628721 - L1M4c LINE L1 -5638 746 670 1 1591 2357 156 72 70 chr5 131908548 131909046 -20628213 + RLTR19 LTR ERVK 1 499 0 1 1591 719 200 26 65 chr5 131909011 131909166 -20628093 - B1_Mur3 SINE Alu 0 149 1 1 1591 406 255 61 124 chr5 131909166 131909295 -20627964 - MT2B LTR ERVL -438 146 26 1 1591 462 276 29 28 chr5 131909411 131909536 -20627723 + PB1D10 SINE Alu 3 114 -3 1 1591 1003 155 20 9 chr5 131909561 131909758 -20627501 + ZP3AR Satellite Satellite 1 199 -1 1 1591 2991 34 9 0 chr5 131909827 131910177 -20627082 - L1Md_F3 LINE L1 -203 6381 6029 1 1591 1418 34 34 0 chr5 131910177 131910356 -20626903 + L1Md_F3 LINE L1 6399 6583 -1 1 1591 32 26 0 0 chr5 131910356 131910395 -20626864 + AT_rich Low_complexity Low_complexity 1 39 0 1 1591 435 83 0 0 chr5 131910619 131910679 -20626580 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1591 891 239 40 10 chr5 131910679 131910867 -20626392 - ID_B1 SINE B4 -11 213 18 1 1591 224 314 0 0 chr5 131910868 131910919 -20626340 - ID SINE ID -170 54 4 1 1591 420 20 0 0 chr5 131911024 131911073 -20626186 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1591 270 262 0 0 chr5 131911897 131911958 -20625301 - B3A SINE B2 -81 117 57 1 1591 923 124 139 72 chr5 131911960 131912168 -20625091 + URR1B DNA MER1_type 1 222 -3 1 1591 332 307 71 93 chr5 131912485 131912625 -20624634 - RSINE1 SINE B4 0 165 29 1 1591 451 228 7 106 chr5 131912704 131912846 -20624413 - RSINE1 SINE B4 0 165 38 1 1591 452 223 61 26 chr5 131912844 131912959 -20624300 - ID_B1 SINE B4 -91 133 15 1 1591 381 93 0 0 chr5 131913319 131913373 -20623886 + (T)n Simple_repeat Simple_repeat 1 54 0 1 1591 21 0 0 0 chr5 131913496 131913517 -20623742 + AT_rich Low_complexity Low_complexity 1 21 0 1 1591 189 0 0 0 chr5 131913885 131913906 -20623353 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1591 423 0 0 0 chr5 131913935 131913982 -20623277 + (TC)n Simple_repeat Simple_repeat 2 48 0 1 1591 186 167 0 0 chr5 131914501 131914537 -20622722 + A-rich Low_complexity Low_complexity 1 36 0 1 1591 213 39 0 0 chr5 131915685 131915711 -20621548 + (TGG)n Simple_repeat Simple_repeat 2 27 0 1 1591 810 193 157 25 chr5 131917015 131917212 -20620047 + URR1B DNA MER1_type 1 223 -2 1 1591 651 169 88 8 chr5 131917959 131918084 -20619175 - B1_Mur1 SINE Alu -1 148 14 1 1591 481 240 20 0 chr5 131918324 131918424 -20618835 - B4A SINE B4 -190 102 1 1 1591 216 189 0 0 chr5 131918476 131918513 -20618746 + T-rich Low_complexity Low_complexity 4 40 0 1 1591 272 25 0 48 chr5 131918751 131918793 -20618466 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1591 356 0 23 0 chr5 131920040 131920084 -20617175 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 1 1591 339 211 52 21 chr5 131920088 131920185 -20617074 - PB1D9 SINE Alu -5 115 16 1 1591 292 288 149 144 chr5 131920185 131920302 -20616957 - ID_B1 SINE B4 -4 219 5 1 1591 276 149 0 0 chr5 131920520 131920567 -20616692 + (TAA)n Simple_repeat Simple_repeat 3 49 0 1 1591 1079 218 0 36 chr5 131920593 131920817 -20616442 - B3 SINE B2 0 216 1 1 1591 610 203 48 61 chr5 131920853 131921000 -20616259 - B1_Mur1 SINE Alu 0 149 5 1 1591 339 259 0 12 chr5 131921025 131921107 -20616152 - ID4 SINE ID -1 82 2 1 1591 253 224 20 0 chr5 131921107 131921156 -20616103 - ZP3AR Satellite Satellite -117 95 46 1 1591 373 221 50 50 chr5 131921671 131921750 -20615509 - ID_B1 SINE B4 -26 198 120 1 1591 754 237 49 35 chr5 131921750 131921960 -20615299 + B3 SINE B2 1 215 -1 1 1591 729 160 0 16 chr5 131921968 131922089 -20615170 + PB1D9 SINE Alu 1 119 -1 1 1591 201 39 0 0 chr5 131922091 131922117 -20615142 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1 1591 740 242 114 15 chr5 131922415 131922616 -20614643 + MTE2b LTR MaLR 1 221 -158 1 1591 211 98 59 0 chr5 131922791 131922842 -20614417 + A-rich Low_complexity Low_complexity 2 55 0 1 1591 1435 210 111 18 chr5 131923004 131923338 -20613921 + MTD LTR MaLR 41 405 -14 1 1591 404 264 218 36 chr5 131923418 131923611 -20613648 - B4A SINE B4 -52 240 13 1 1591 498 244 133 0 chr5 131924080 131924215 -20613044 + ID_B1 SINE B4 12 164 -60 1 1591 507 60 0 0 chr5 131924218 131924285 -20612974 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1591 206 233 0 0 chr5 131924399 131924442 -20612817 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1591 219 69 0 0 chr5 131924504 131924533 -20612726 + (TCC)n Simple_repeat Simple_repeat 2 30 0 1 1591 361 323 50 25 chr5 131924583 131924742 -20612517 - RSINE1 SINE B4 -1 164 2 1 1591 203 194 0 0 chr5 131924745 131924781 -20612478 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1 1591 641 311 76 5 chr5 131924781 131924965 -20612294 - B3A SINE B2 -1 197 1 1 1591 225 0 0 0 chr5 131925045 131925070 -20612189 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1591 303 225 12 36 chr5 131925221 131925304 -20611955 - B4 SINE B4 -210 82 2 1 1591 187 233 23 0 chr5 131925391 131925434 -20611825 - L3b LINE CR1 -10 472 429 1 1591 908 256 9 9 chr5 131926150 131926363 -20610896 + ID_B1 SINE B4 2 214 -10 1 1591 648 167 136 0 chr5 131926401 131926533 -20610726 + B1_Mur4 SINE Alu 1 150 0 1 1591 412 202 147 29 chr5 131926545 131926647 -20610612 + B1F1 SINE Alu 1 114 -35 1 1591 612 304 12 24 chr5 131926723 131926888 -20610371 - RSINE1 SINE B4 -2 163 1 1 1591 1055 226 85 150 chr5 131926890 131927291 -20609968 + MTE2a LTR MaLR 5 379 0 1 1591 475 260 19 0 chr5 131927563 131927667 -20609592 - ID_B1 SINE B4 -6 218 113 1 1591 586 239 162 35 chr5 131928223 131928396 -20608863 - ID_B1 SINE B4 -21 203 9 1 1591 460 277 109 0 chr5 131928409 131928528 -20608731 - ID_B1 SINE B4 -8 216 85 1 1591 372 238 25 12 chr5 131928680 131928761 -20608498 - B3 SINE B2 -105 111 30 1 1591 211 0 28 56 chr5 131928775 131928811 -20608448 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1 1591 715 275 6 36 chr5 131928811 131928834 -20608425 + MTD LTR MaLR 22 44 -375 1 1591 3453 45 0 0 chr5 131928834 131929230 -20608029 + MTA_Mm LTR MaLR 1 396 0 1 1591 715 230 353 21 chr5 131929230 131929510 -20607749 + MTD LTR MaLR 45 417 -2 1 1591 268 140 20 0 chr5 131929510 131929548 -20607711 - B3A SINE B2 -159 39 1 1 1591 356 195 39 13 chr5 131929726 131929804 -20607455 + B4 SINE B4 7 86 -206 1 1591 518 238 71 0 chr5 131929828 131929954 -20607305 + B4 SINE B4 158 292 0 1 1591 261 0 0 0 chr5 131929968 131929997 -20607262 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1591 207 0 0 0 chr5 131929997 131930019 -20607240 + (GA)n Simple_repeat Simple_repeat 2 24 0 1 1591 752 299 32 0 chr5 131930770 131930957 -20606302 - B4 SINE B4 -98 194 2 1 1591 339 85 0 0 chr5 131931794 131931841 -20605418 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1 1591 448 312 78 0 chr5 131931862 131932003 -20605256 - RSINE1 SINE B4 -6 159 8 1 1591 523 317 57 20 chr5 131932030 131932275 -20604984 - Lx9 LINE L1 -149 7495 7242 1 1591 574 298 0 37 chr5 131932434 131932570 -20604689 - RSINE1 SINE B4 -33 132 2 1 1591 654 254 46 51 chr5 131932811 131933006 -20604253 - B3A SINE B2 -4 194 1 1 1591 506 250 95 96 chr5 131933417 131933595 -20603664 + B3A SINE B2 15 195 0 1 1591 189 107 0 0 chr5 131934279 131934307 -20602952 + (CGTG)n Simple_repeat Simple_repeat 2 29 0 1 1591 1079 265 121 15 chr5 131934719 131935069 -20602190 + MTE2b LTR MaLR 38 421 0 1 1591 260 253 20 81 chr5 131935335 131935434 -20601825 + PB1D10 SINE Alu 21 113 -4 1 1591 615 62 0 0 chr5 131935458 131935538 -20601721 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 1591 776 249 5 32 chr5 131935553 131935740 -20601519 - B3A SINE B2 -16 182 1 1 1591 216 0 0 0 chr5 131936764 131936788 -20600471 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1591 591 244 93 12 chr5 131937391 131937553 -20599706 - B4A SINE B4 -3 289 115 1 1591 235 287 18 82 chr5 131937460 131937570 -20599689 - PB1D7 SINE Alu -6 114 12 1 1591 619 225 60 53 chr5 131937752 131937902 -20599357 + B3A SINE B2 1 151 -47 1 1591 477 0 0 0 chr5 131937909 131937962 -20599297 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1591 608 234 50 28 chr5 131938621 131938762 -20598497 - B1_Mur1 SINE Alu -5 144 1 1 1591 582 292 18 24 chr5 131938831 131938996 -20598263 - RSINE1 SINE B4 0 165 2 1 1591 291 28 0 0 chr5 131939022 131939058 -20598201 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1591 485 152 77 48 chr5 131939090 131939194 -20598065 - RSINE1 SINE B4 -45 120 14 1 1591 595 198 58 33 chr5 131940077 131940197 -20597062 - B1_Mur1 SINE Alu -5 144 22 1 1591 314 322 48 171 chr5 131940197 131940273 -20596986 - ID_B1 SINE B4 -4 219 60 1 1591 290 301 0 0 chr5 131940273 131940356 -20596903 - ID4_ SINE ID 0 83 1 1 1591 314 322 48 171 chr5 131940356 131940409 -20596850 - ID SINE ID -165 59 1 1 1591 1072 108 0 0 chr5 131940409 131940514 -20596745 - ZP3AR Satellite Satellite -11 201 44 1 1591 850 234 47 42 chr5 131940665 131940857 -20596402 + B3 SINE B2 2 194 -22 1 1591 862 208 30 54 chr5 131941450 131941653 -20595606 - B3A SINE B2 0 198 1 1 1591 210 37 0 0 chr5 131943128 131943155 -20594104 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1591 21 0 0 0 chr5 131943969 131943990 -20593269 + AT_rich Low_complexity Low_complexity 1 21 0 1 1591 439 261 103 9 chr5 131944020 131944136 -20593123 - RSINE1 SINE B4 -35 130 4 1 1591 872 165 202 39 chr5 131944136 131944335 -20592924 - B4 SINE B4 -59 233 1 1 1591 687 259 10 36 chr5 131944540 131944736 -20592523 - B3 SINE B2 -3 213 23 1 1591 674 273 74 0 chr5 131944756 131944932 -20592327 - ID_B1 SINE B4 -35 189 1 1 1591 419 235 29 10 chr5 131945484 131945587 -20591672 - PB1D10 SINE Alu -12 105 1 1 1591 493 294 52 0 chr5 131945930 131946083 -20591176 - ID_B1 SINE B4 -1 223 63 1 1591 2242 152 33 40 chr5 131946613 131947037 -20590222 + MTC LTR MaLR 1 421 0 1 1591 774 235 42 6 chr5 131947199 131947252 -20590007 - B3A SINE B2 -25 173 115 1 1591 198 0 0 0 chr5 131947252 131947274 -20589985 + (C)n Simple_repeat Simple_repeat 1 22 0 1 1591 774 235 42 6 chr5 131947274 131947387 -20589872 - B3A SINE B2 -84 114 1 1 1591 385 260 30 10 chr5 131948418 131948519 -20588740 - RMER30 DNA MER1_type -3 199 97 1 1591 347 275 47 55 chr5 131948520 131948647 -20588612 - B1F1 SINE Alu 0 149 24 1 1591 896 236 13 12 chr5 131948544 131948745 -20588514 - ID_B1 SINE B4 -17 207 10 1 1591 234 91 0 0 chr5 131948745 131948778 -20588481 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1591 360 297 0 0 chr5 131948796 131948870 -20588389 - RMER30 DNA MER1_type -121 81 8 1 1591 284 179 35 18 chr5 131949066 131949123 -20588136 + B4 SINE B4 166 223 -69 1 1591 243 88 0 0 chr5 131949231 131949265 -20587994 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1591 298 174 0 128 chr5 131949520 131949619 -20587640 - B4 SINE B4 0 292 210 1 1591 21 57 0 0 chr5 131949622 131949657 -20587602 + AT_rich Low_complexity Low_complexity 1 35 0 1 1591 556 247 32 19 chr5 131949675 131949832 -20587427 - RSINE1 SINE B4 -2 163 5 1 1591 638 259 96 16 chr5 131949843 131950031 -20587228 - B4 SINE B4 -75 217 15 1 1591 222 37 0 0 chr5 131950033 131950060 -20587199 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 1 1591 695 247 42 42 chr5 131950136 131950301 -20586958 + B3A SINE B2 6 171 -27 1 1591 408 88 0 0 chr5 131950301 131950358 -20586901 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1591 695 247 42 42 chr5 131950358 131950382 -20586877 + B3A SINE B2 172 195 -3 1 1591 204 88 59 0 chr5 131951161 131951195 -20586064 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 1 1591 371 289 24 81 chr5 131951195 131951319 -20585940 - PB1D10 SINE Alu 0 117 1 1 1591 625 280 6 43 chr5 131951319 131951386 -20585873 - ID SINE ID -150 74 14 1 1591 782 181 6 119 chr5 131951439 131951615 -20585644 + MTEb LTR MaLR 224 379 0 1 1591 772 183 23 0 chr5 131952125 131952256 -20585003 - B1_Mur3 SINE Alu -13 136 3 1 1591 325 282 0 104 chr5 131953052 131953167 -20584092 + B3 SINE B2 113 215 -1 1 1591 447 295 64 98 chr5 131953241 131953414 -20583845 + ZP3AR Satellite Satellite 34 200 -12 1 1591 420 20 0 0 chr5 131953803 131953852 -20583407 + (GA)n Simple_repeat Simple_repeat 1 49 0 1 1591 501 275 27 66 chr5 131953998 131954181 -20583078 - B3A SINE B2 -3 195 20 1 1591 203 171 0 0 chr5 131954406 131954447 -20582812 + T-rich Low_complexity Low_complexity 1 41 0 1 1591 254 318 0 43 chr5 131954512 131954593 -20582666 + MER20B DNA MER1_type 368 444 -339 1 1591 826 249 118 146 chr5 131954593 131954661 -20582598 + MTEb LTR MaLR 1 68 -311 1 1591 180 77 0 0 chr5 131954661 131954687 -20582572 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1591 826 249 118 146 chr5 131954687 131955008 -20582251 + MTEb LTR MaLR 69 378 -1 1 1591 402 287 24 32 chr5 131955008 131955102 -20582157 + B1_Mur3 SINE Alu 56 148 -1 1 1591 1149 151 29 124 chr5 131955246 131955400 -20581859 - URR1B DNA MER1_type 0 225 87 1 1591 1024 76 23 0 chr5 131955400 131955532 -20581727 - B1_Mm SINE Alu -10 137 3 1 1591 1149 151 29 124 chr5 131955532 131955619 -20581640 - URR1B DNA MER1_type -139 86 7 1 1591 935 102 8 0 chr5 131955671 131955799 -20581460 - B1_Mus1 SINE Alu -18 130 2 1 1591 262 191 0 0 chr5 131955835 131955882 -20581377 - MTEb LTR MaLR -328 51 5 1 1591 561 234 56 14 chr5 131956110 131956253 -20581006 + B1F2 SINE Alu 1 149 0 1 1591 436 228 79 97 chr5 131956562 131956727 -20580532 + RSINE1 SINE B4 4 165 0 1 1591 1064 231 129 24 chr5 131956991 131957332 -20579927 + MTEb LTR MaLR 1 377 -2 1 1591 602 267 48 0 chr5 131957437 131957583 -20579676 + RSINE1 SINE B4 3 155 -10 1 1591 940 228 4 27 chr5 131958627 131958852 -20578407 - ID_B1 SINE B4 0 224 5 1 1591 375 273 34 11 chr5 131958950 131959039 -20578220 - B4A SINE B4 -4 288 198 1 1591 481 228 10 63 chr5 131959213 131959419 -20577840 - RMER17C LTR ERVK -135 275 81 1 1591 308 305 22 30 chr5 131959553 131959688 -20577571 - B1F SINE Alu -3 146 13 1 1591 923 238 3 10 chr5 131959927 131960149 -20577110 - B3A SINE B2 -1 215 2 1 1591 26 23 0 23 chr5 131960910 131960929 -20576330 + AT_rich Low_complexity Low_complexity 1 19 0 1 1591 538 203 138 0 chr5 131960929 131961052 -20576207 + B1_Mur1 SINE Alu 1 140 -9 1 1591 26 23 0 23 chr5 131961052 131961076 -20576183 + AT_rich Low_complexity Low_complexity 1 24 0 1 1591 253 163 0 75 chr5 131961126 131961179 -20576080 - B3A SINE B2 -78 120 72 1 1591 284 324 28 37 chr5 131961172 131961281 -20575978 + RSINE1 SINE B4 10 117 -48 1 1591 425 217 0 35 chr5 131961393 131961479 -20575780 + PB1D9 SINE Alu 31 113 -7 1 1591 238 173 0 103 chr5 131961427 131961485 -20575774 + ID_B1 SINE B4 172 223 -1 1 1591 237 300 57 0 chr5 131961638 131961708 -20575551 + ID SINE ID 8 81 -143 1 1591 2435 144 12 37 chr5 131961728 131962132 -20575127 + ORR1B1 LTR MaLR 1 394 0 1 1591 657 238 8 8 chr5 131962270 131962393 -20574866 + RSINE1 SINE B4 14 136 -29 1 1591 218 310 110 37 chr5 131962393 131962434 -20574825 + B2_Mm2 SINE B2 13 188 -7 1 1591 328 297 111 61 chr5 131962483 131962659 -20574600 - B3A SINE B2 -30 186 1 1 1591 429 271 57 0 chr5 131962659 131962753 -20574506 + B4 SINE B4 173 273 -19 1 1591 940 262 15 0 chr5 131962873 131963079 -20574180 - ID_B1 SINE B4 -13 211 3 1 1591 813 257 65 11 chr5 131964275 131964316 -20572943 - B3A SINE B2 -3 195 148 1 1591 315 0 0 0 chr5 131964316 131964351 -20572908 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1591 813 257 65 11 chr5 131964351 131964494 -20572765 - B3A SINE B2 -51 147 3 1 1591 375 333 0 72 chr5 131964494 131964645 -20572614 + MTE2b LTR MaLR 72 211 -168 1 1591 232 211 19 37 chr5 131964678 131964732 -20572527 - ZP3AR Satellite Satellite -149 63 11 1 1591 1358 75 0 29 chr5 131964749 131964971 -20572288 - ZP3AR Satellite Satellite -1 215 1 1 1591 721 244 6 6 chr5 131965598 131965755 -20571504 - Lx8 LINE L1 -1040 6433 6277 1 1591 771 234 180 16 chr5 131965753 131966122 -20571137 + Lx8 LINE L1 6903 7332 -141 1 1591 225 0 0 0 chr5 131966127 131966152 -20571107 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1591 343 293 133 21 chr5 131966390 131966533 -20570726 + L1M2 LINE L1 5169 5327 -816 1 1591 624 243 7 14 chr5 131966534 131966680 -20570579 + RSINE1 SINE B4 3 147 -18 1 1591 354 258 123 51 chr5 131966707 131966884 -20570375 + L1M2 LINE L1 5308 5496 -816 1 1591 318 306 35 0 chr5 131967008 131967093 -20570166 - PB1D7 SINE Alu -11 109 22 1 1591 525 186 0 40 chr5 131967091 131967192 -20570067 + ID_B1 SINE B4 128 224 0 1 1591 598 274 84 31 chr5 131967253 131967477 -20569782 + B4A SINE B4 5 240 -52 1 1591 232 256 78 44 chr5 131967477 131967567 -20569692 + RSINE1 SINE B4 3 95 -70 1 1591 25 0 0 0 chr5 131967602 131967627 -20569632 + AT_rich Low_complexity Low_complexity 1 25 0 1 1591 863 205 77 34 chr5 131968502 131968709 -20568550 + B3 SINE B2 1 216 0 1 1591 459 274 51 0 chr5 131968738 131968855 -20568404 + B1F SINE Alu 25 147 -2 1 1591 756 311 5 28 chr5 131968887 131969099 -20568160 + ID_B1 SINE B4 17 223 -1 1 1591 226 315 0 0 chr5 131969100 131969173 -20568086 + A-rich Low_complexity Low_complexity 1 73 0 1 1591 288 291 112 34 chr5 131969664 131969754 -20567505 - B2_Mm1t SINE B2 0 193 24 1 1591 307 257 13 51 chr5 131969754 131969832 -20567427 - RSINE1 SINE B4 -78 87 13 1 1591 381 290 101 83 chr5 131969893 131970062 -20567197 - B4A SINE B4 -118 174 3 1 1591 186 43 0 0 chr5 131970075 131970098 -20567161 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1 1591 383 328 8 39 chr5 131970100 131970227 -20567032 - ID_B1 SINE B4 -21 203 81 1 1591 337 252 28 55 chr5 131970229 131970338 -20566921 - PB1D10 SINE Alu -7 110 5 1 1591 381 102 0 0 chr5 131970945 131971004 -20566255 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1591 1421 82 0 20 chr5 131971030 131971228 -20566031 + B2_Mm2 SINE B2 2 195 0 1 1591 25 0 0 0 chr5 131971336 131971361 -20565898 + AT_rich Low_complexity Low_complexity 1 25 0 1 1591 726 242 175 9 chr5 131971374 131971591 -20565668 + B4 SINE B4 16 268 -24 1 1591 219 146 0 0 chr5 131971646 131971687 -20565572 + (A)n Simple_repeat Simple_repeat 1 41 0 1 1591 292 259 172 89 chr5 131971692 131971849 -20565410 + B3A SINE B2 17 186 -12 1 1591 324 70 0 0 chr5 131972272 131972315 -20564944 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1591 395 306 0 9 chr5 131972570 131972679 -20564580 + B4 SINE B4 171 278 -14 1 1591 352 283 0 96 chr5 131972843 131972968 -20564291 + B1F SINE Alu 11 123 -26 1 1591 531 222 59 7 chr5 131973318 131973454 -20563805 + B1F SINE Alu 7 149 0 1 1591 1681 47 2 0 chr5 131973463 131973838 -20563421 + ZP3AR Satellite Satellite 1 375 0 1 1591 262 192 19 250 chr5 131973778 131973882 -20563377 + ID2 SINE ID 1 80 -3 1 1591 659 270 15 0 chr5 131975127 131975264 -20561995 + RSINE1 SINE B4 3 141 -24 1 1591 398 116 29 0 chr5 131975277 131975346 -20561913 + (TATG)n Simple_repeat Simple_repeat 2 72 0 1 1591 1101 232 51 17 chr5 131975675 131975912 -20561347 + B4A SINE B4 28 272 -20 1 1591 377 313 0 57 chr5 131976475 131976597 -20560662 + PB1D10 SINE Alu 1 115 -2 1 1591 709 176 0 22 chr5 131976601 131976740 -20560519 + B3A SINE B2 1 136 -62 1 1591 38557 30 0 0 chr5 131976747 131983170 -20554089 - L1Md_T LINE L1 0 6585 66 1 1591 537 16 0 0 chr5 131983230 131983292 -20553967 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1591 28 0 0 0 chr5 131983295 131983323 -20553936 + AT_rich Low_complexity Low_complexity 1 28 0 1 1591 298 247 112 0 chr5 131983843 131983932 -20553327 - B3A SINE B2 -98 100 2 1 1591 215 163 0 23 chr5 131984218 131984262 -20552997 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1 1591 626 224 7 40 chr5 131984633 131984782 -20552477 + B1F2 SINE Alu 4 147 -2 1 1591 329 209 0 23 chr5 131984813 131984901 -20552358 + GA-rich Low_complexity Low_complexity 3 88 0 1 1591 715 154 40 24 chr5 131985068 131985194 -20552065 + ZP3AR Satellite Satellite 21 148 -64 1 1591 257 315 0 0 chr5 131985194 131985267 -20551992 + ID4 SINE ID 1 73 -10 1 1591 357 24 0 0 chr5 131985290 131985332 -20551927 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1591 843 177 13 13 chr5 131985578 131985727 -20551532 - URR1B DNA MER1_type -76 149 1 1 1591 968 68 113 0 chr5 131985835 131985968 -20551291 - B1_Mus1 SINE Alu 0 148 1 1 1591 384 190 38 0 chr5 131986017 131986096 -20551163 + PB1D10 SINE Alu 27 108 -9 1 1591 231 232 0 0 chr5 131986386 131986442 -20550817 + CT-rich Low_complexity Low_complexity 1 56 0 1 1591 198 0 0 0 chr5 131986461 131986483 -20550776 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1591 180 97 0 0 chr5 131986483 131986514 -20550745 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1591 382 295 100 7 chr5 131986670 131986810 -20550449 - ID_B1 SINE B4 -70 154 2 1 1591 508 233 0 28 chr5 131986889 131986995 -20550264 + PB1D10 SINE Alu 6 108 -9 1 1591 379 277 39 19 chr5 131987703 131987806 -20549453 - B4 SINE B4 -187 105 1 1 1591 1585 213 27 9 chr5 131988027 131988358 -20548901 + MTEa LTR MaLR 29 365 -14 1 1591 213 369 0 0 chr5 131988384 131988449 -20548810 + (CGTG)n Simple_repeat Simple_repeat 3 67 0 1 1591 635 212 30 15 chr5 131989344 131989478 -20547781 + RSINE1 SINE B4 3 138 -27 1 198 348 111 0 0 chr5 131989478 131989532 -20547727 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1592 345 329 81 23 chr5 131989719 131989980 -20547279 + B4A SINE B4 1 276 -16 1 1592 1133 48 0 76 chr5 131990129 131990286 -20546973 - B1_Mus2 SINE Alu -2 145 1 1 1592 514 237 6 187 chr5 131990397 131990575 -20546684 + ID_B1 SINE B4 80 219 -5 1 1592 471 241 45 0 chr5 131990620 131990732 -20546527 + PB1D10 SINE Alu 1 117 0 1 1592 537 254 105 22 chr5 131990751 131990932 -20546327 + B3A SINE B2 1 196 -2 1 1592 450 0 0 0 chr5 131991019 131991069 -20546190 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1592 324 0 0 0 chr5 131991069 131991104 -20546155 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1592 27 0 0 0 chr5 131991107 131991134 -20546125 + AT_rich Low_complexity Low_complexity 1 27 0 1 1592 836 196 0 33 chr5 131991143 131991278 -20545981 + B1_Mur1 SINE Alu 2 136 -13 1 1592 411 73 0 0 chr5 131991278 131991333 -20545926 + (CAA)n Simple_repeat Simple_repeat 1 55 0 1 1592 836 196 0 33 chr5 131991333 131991350 -20545909 + B1_Mur1 SINE Alu 137 149 0 1 1592 226 333 42 0 chr5 131991411 131991483 -20545776 - ID4 SINE ID -2 81 7 1 1592 271 318 117 90 chr5 131992287 131992432 -20544827 - RSINE1 SINE B4 -15 150 2 1 1592 310 153 219 14 chr5 131992513 131992586 -20544673 - B4 SINE B4 -204 88 1 1 1592 555 248 22 37 chr5 131992647 131992781 -20544478 + B1F1 SINE Alu 11 142 -7 1 1592 594 270 84 35 chr5 131993037 131993240 -20544019 - ID_B1 SINE B4 -10 214 2 1 1592 238 269 48 27 chr5 131993279 131993382 -20543877 - B4 SINE B4 -50 174 68 1 1592 450 274 6 0 chr5 131993409 131993513 -20543746 - B4 SINE B4 -182 110 2 1 1592 1130 214 84 117 chr5 131994183 131994575 -20542684 + MTE2a LTR MaLR 1 379 0 1 1592 455 156 74 52 chr5 131994592 131994727 -20542532 + B1F SINE Alu 2 139 -10 1 1592 486 241 211 0 chr5 131995203 131995336 -20541923 + RSINE1 SINE B4 1 161 -4 1 1592 233 231 0 25 chr5 131995440 131995520 -20541739 + CT-rich Low_complexity Low_complexity 4 81 0 1 1592 502 156 33 12 chr5 131995562 131995660 -20541599 - B1F1 SINE Alu 0 120 4 1 1592 647 228 102 0 chr5 131995676 131995803 -20541456 - B1F1 SINE Alu 0 149 10 1 1592 262 319 0 14 chr5 131995898 131995971 -20541288 - MIRb SINE MIR -58 210 139 1 1592 426 301 161 0 chr5 131996482 131996668 -20540591 + ID_B1 SINE B4 1 216 -8 1 1592 569 266 17 92 chr5 131996679 131996853 -20540406 + RSINE1 SINE B4 3 163 -2 1 1592 351 278 10 30 chr5 131997194 131997294 -20539965 + B3A SINE B2 85 182 -16 1 1592 449 271 0 0 chr5 131997835 131997931 -20539328 + MTEa LTR MaLR 1 96 -283 1 1592 263 320 94 23 chr5 131997931 131997963 -20539296 + MLT2B3 LTR ERVL 1 137 -417 1 1592 1199 50 0 0 chr5 131997964 131998104 -20539155 + B1_Mus1 SINE Alu 3 142 -6 1 1592 278 43 0 61 chr5 131998108 131998157 -20539102 + (A)n Simple_repeat Simple_repeat 1 46 0 1 1592 195 69 0 0 chr5 131998158 131998187 -20539072 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1592 740 189 19 25 chr5 131998346 131998503 -20538756 + MTEa LTR MaLR 168 323 -56 1 1592 1474 197 135 42 chr5 131998531 131998886 -20538373 + MTB_Mm LTR MaLR 1 388 -19 1 1592 434 240 60 67 chr5 131999865 131999999 -20537260 + B4 SINE B4 2 134 -158 1 1592 337 169 88 38 chr5 132000001 132000081 -20537178 + B4 SINE B4 136 219 -73 1 1592 433 275 92 76 chr5 132000115 132000300 -20536959 + B4 SINE B4 24 211 -81 2 1592 360 0 0 0 chr5 132000375 132000415 -20536844 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 1592 243 0 0 0 chr5 132000793 132000820 -20536439 + (T)n Simple_repeat Simple_repeat 1 27 0 4 1592 216 184 0 0 chr5 132000956 132001005 -20536254 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1592 583 280 147 35 chr5 132001835 132002094 -20535165 + B4A SINE B4 1 288 -4 6 1592 763 268 68 96 chr5 132002355 132002636 -20534623 + B4A SINE B4 15 287 -5 7 1592 306 50 0 0 chr5 132002980 132003020 -20534239 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1592 809 184 73 78 chr5 132003481 132003699 -20533560 - ID_B1 SINE B4 -1 223 7 9 1592 1298 244 72 9 chr5 132003806 132004154 -20533105 - ORR1D2 LTR MaLR 0 370 1 1 1592 779 283 35 39 chr5 132004826 132005080 -20532179 + RMER15 LTR ERVL 310 562 -13 1 1592 637 242 63 26 chr5 132005448 132005639 -20531620 + B3A SINE B2 1 198 0 1 1592 207 204 23 0 chr5 132005696 132005740 -20531519 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1592 239 371 52 29 chr5 132005792 132005928 -20531331 - RSINE1 SINE B4 -4 161 23 1 1592 1039 218 43 9 chr5 132005929 132006160 -20531099 - B4 SINE B4 -52 240 2 1 1592 274 240 52 10 chr5 132007245 132007342 -20529917 + (CATATA)n Simple_repeat Simple_repeat 5 105 0 1 1592 260 242 0 31 chr5 132008109 132008173 -20529086 + GA-rich Low_complexity Low_complexity 1 62 0 1 1592 183 293 66 49 chr5 132009694 132009755 -20527504 + L3 LINE CR1 2639 2700 -1789 1 1592 39 0 0 0 chr5 132010075 132010114 -20527145 + AT_rich Low_complexity Low_complexity 1 39 0 1 1592 232 167 0 0 chr5 132010162 132010210 -20527049 + T-rich Low_complexity Low_complexity 1 48 0 2 1592 207 0 0 0 chr5 132012076 132012099 -20525160 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 2 1592 485 322 13 32 chr5 132012259 132012413 -20524846 + RSINE1 SINE B4 1 151 -14 2 1592 233 57 0 28 chr5 132014086 132014122 -20523137 + (GGA)n Simple_repeat Simple_repeat 1 35 0 2 1592 210 185 18 18 chr5 132014613 132014668 -20522591 + (CCCCG)n Simple_repeat Simple_repeat 3 57 0 2 1592 324 0 0 0 chr5 132015300 132015336 -20521923 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 2 1592 369 165 211 16 chr5 132015485 132015573 -20521686 - B3A SINE B2 -116 100 6 2 1592 21 36 0 0 chr5 132015745 132015773 -20521486 + AT_rich Low_complexity Low_complexity 1 28 0 2 1592 431 211 113 81 chr5 132015779 132015903 -20521356 + RSINE1 SINE B4 2 129 -36 2 1592 209 89 21 43 chr5 132015906 132015953 -20521306 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2 1592 480 35 0 0 chr5 132016004 132016062 -20521197 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 3 1592 1210 62 0 0 chr5 132016062 132016208 -20521051 - B1_Mus2 SINE Alu 0 147 2 3 1592 281 247 26 0 chr5 132016337 132016414 -20520845 - ID_B1 SINE B4 -9 215 137 3 1592 293 252 126 0 chr5 132016470 132016573 -20520686 - PB1D10 SINE Alu 0 117 2 3 1592 210 206 233 0 chr5 132016742 132016815 -20520444 + PB1D10 SINE Alu 27 116 -1 3 1592 395 173 12 0 chr5 132017145 132017226 -20520033 + (TA)n Simple_repeat Simple_repeat 2 83 0 3 1592 435 254 5 12 chr5 132017349 132017447 -20519812 + PB1D10 SINE Alu 36 130 -20 3 1592 1371 152 0 5 chr5 132017470 132017694 -20519565 + URR1B DNA MER1_type 1 223 -2 3 1592 43 20 0 0 chr5 132018015 132018065 -20519194 + AT_rich Low_complexity Low_complexity 1 50 0 3 1592 527 282 87 19 chr5 132018096 132018315 -20518944 - ID_B1 SINE B4 -45 247 2 3 1592 1094 102 0 13 chr5 132018358 132018507 -20518752 - B1_Mus1 SINE Alu -1 147 1 4 1592 324 268 0 47 chr5 132019217 132019303 -20517956 - ID4_ SINE ID -1 82 1 4 1592 448 245 110 7 chr5 132019707 132019862 -20517397 + B3A SINE B2 8 198 0 4 1592 459 230 10 10 chr5 132019970 132020071 -20517188 - PB1D10 SINE Alu -5 112 12 4 1592 1099 282 71 24 chr5 132020189 132020570 -20516689 + MTD LTR MaLR 5 403 -16 4 1592 747 175 8 16 chr5 132021127 132021255 -20516004 - RSINE1 SINE B4 -37 128 2 4 1592 270 0 0 0 chr5 132021413 132021443 -20515816 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1592 232 350 67 43 chr5 132021518 132021682 -20515577 + MLT1G1 LTR MaLR 371 538 -41 4 1592 1436 136 3 7 chr5 132021755 132022094 -20515165 - ZP3AR Satellite Satellite -150 337 1 4 1592 216 0 0 0 chr5 132022219 132022243 -20515016 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4 1592 830 254 14 5 chr5 132022635 132022853 -20514406 + ID_B1 SINE B4 5 224 0 5 1592 748 250 16 11 chr5 132022864 132023050 -20514209 + B3A SINE B2 1 187 -11 5 1592 385 274 120 8 chr5 132023102 132023227 -20514032 + B1F SINE Alu 3 141 -8 5 1592 466 252 8 68 chr5 132023621 132023753 -20513506 + RSINE1 SINE B4 13 136 -29 5 1592 230 378 0 30 chr5 132023867 132023968 -20513291 - MamSINE1 SINE tRNA -72 218 121 5 1592 32 0 0 0 chr5 132024256 132024288 -20512971 + AT_rich Low_complexity Low_complexity 1 32 0 5 1592 231 308 65 36 chr5 132024288 132024426 -20512833 + YREP_Mm Unknown Unknown 153 294 -1518 5 1592 989 256 10 5 chr5 132024313 132024521 -20512738 - ID_B1 SINE B4 -8 216 8 5 1592 348 200 0 0 chr5 132024535 132024630 -20512629 + CT-rich Low_complexity Low_complexity 1 95 0 5 1592 281 292 52 43 chr5 132024671 132024776 -20512483 - B1_Mus2 SINE Alu -9 111 1 5 1592 282 116 0 0 chr5 132024815 132024858 -20512401 + (A)n Simple_repeat Simple_repeat 1 43 0 6 1592 479 324 88 55 chr5 132025124 132025362 -20511897 - MamSINE1 SINE tRNA -3 287 42 6 1592 342 239 49 74 chr5 132025412 132025534 -20511725 + ID_B1 SINE B4 104 222 -2 6 1592 558 79 0 0 chr5 132025540 132025616 -20511643 + (TCTCCC)n Simple_repeat Simple_repeat 2 77 0 6 1592 276 323 48 77 chr5 132025731 132025749 -20511510 - B4A SINE B4 -48 244 86 6 1592 354 281 68 48 chr5 132025749 132025895 -20511364 - PB1D10 SINE Alu 0 149 1 6 1592 854 177 0 14 chr5 132025944 132026087 -20511172 + B1_Mur1 SINE Alu 4 144 -5 6 1592 243 61 0 0 chr5 132026093 132026126 -20511133 + (CAAAC)n Simple_repeat Simple_repeat 1 33 0 6 1592 968 145 0 0 chr5 132026557 132026695 -20510564 - B1_Mur4 SINE Alu -8 142 5 6 1592 288 237 199 60 chr5 132026743 132026770 -20510489 - B2_Mm2 SINE B2 -6 189 153 6 1592 797 30 10 0 chr5 132026770 132026870 -20510389 + (GA)n Simple_repeat Simple_repeat 1 101 0 7 1592 481 229 155 3 chr5 132026870 132027008 -20510251 - B3A SINE B2 -43 152 1 6 1592 836 275 14 5 chr5 132027553 132027765 -20509494 - ID_B1 SINE B4 -5 219 6 7 1592 920 258 15 0 chr5 132028028 132028226 -20509033 + B4 SINE B4 20 220 -72 7 1592 252 0 0 0 chr5 132028227 132028255 -20509004 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1592 343 295 19 28 chr5 132028273 132028381 -20508878 + RSINE1 SINE B4 8 114 -51 7 1592 230 219 0 0 chr5 132028401 132028442 -20508817 + RSINE1 SINE B4 66 106 -59 7 1592 235 273 0 18 chr5 132028902 132028958 -20508301 + polypyrimidine Low_complexity Low_complexity 4 58 0 7 1592 232 243 25 63 chr5 132029328 132029407 -20507852 + MIRb SINE MIR 15 90 -178 7 1592 639 228 281 30 chr5 132029485 132029716 -20507543 + B4 SINE B4 2 290 -2 7 1592 186 250 21 10 chr5 132029756 132029822 -20507437 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 7 1592 264 122 0 0 chr5 132029822 132029863 -20507396 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1592 186 250 21 10 chr5 132029863 132029893 -20507366 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 8 1592 557 340 60 15 chr5 132029957 132030223 -20507036 + B4A SINE B4 1 278 -14 8 1592 2293 93 48 0 chr5 132030288 132030600 -20506659 + ORR1A2 LTR MaLR 1 327 0 8 1592 332 222 81 27 chr5 132030754 132030828 -20506431 + ZP3AR Satellite Satellite 3 80 -132 8 1592 1157 101 6 0 chr5 132031434 132031593 -20505666 + B2_Mm1a SINE B2 1 160 -33 8 1592 360 0 0 0 chr5 132031593 132031633 -20505626 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 8 1592 716 244 62 47 chr5 132031633 132031684 -20505575 + B3 SINE B2 164 214 -2 8 1592 1109 222 14 5 chr5 132031898 132032120 -20505139 - ID_B1 SINE B4 0 224 1 8 1592 31 0 0 0 chr5 132032375 132032406 -20504853 + AT_rich Low_complexity Low_complexity 1 31 0 8 1592 367 273 53 159 chr5 132032574 132032744 -20504515 - B4 SINE B4 -16 276 125 9 1592 1449 147 67 98 chr5 132032748 132033094 -20504165 + RMER15 LTR ERVL 2 336 -239 9 1592 353 154 0 97 chr5 132033100 132033172 -20504087 + RMER15 LTR ERVL 511 575 0 9 1592 391 303 0 10 chr5 132033172 132033270 -20503989 - B4 SINE B4 -192 100 4 9 1592 536 184 0 48 chr5 132033295 132033398 -20503861 - PB1D9 SINE Alu -18 102 5 9 1592 781 261 57 0 chr5 132033414 132033625 -20503634 - ID_B1 SINE B4 0 224 2 9 1592 344 269 61 17 chr5 132033626 132033761 -20503498 + MIR3 SINE MIR 63 201 -7 9 1592 610 205 9 0 chr5 132034904 132035016 -20502243 + RSINE1 SINE B4 2 114 -51 9 1592 470 258 136 43 chr5 132035035 132035197 -20502062 - B3 SINE B2 -4 212 36 9 1592 1248 91 11 17 chr5 132035197 132035376 -20501883 + B2_Mm1t SINE B2 2 179 -14 9 1592 367 125 19 17 chr5 132035407 132035480 -20501779 + B2_Mm2 SINE B2 46 123 -75 9 1592 261 0 0 0 chr5 132035489 132035518 -20501741 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 9 1592 1191 61 0 0 chr5 132035649 132035796 -20501463 + B1_Mus2 SINE Alu 1 147 0 1 1592 234 0 0 0 chr5 132035796 132035822 -20501437 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1592 749 274 117 124 chr5 132035835 132036021 -20501238 + B4 SINE B4 2 213 -79 1 1592 440 273 51 25 chr5 132036021 132036179 -20501080 + RSINE1 SINE B4 1 162 -3 1 1592 749 274 117 124 chr5 132036179 132036283 -20500976 + B4 SINE B4 214 290 -2 1 1592 275 202 57 0 chr5 132036297 132036421 -20500838 + (TA)n Simple_repeat Simple_repeat 2 132 0 1 1592 231 362 97 39 chr5 132036423 132036702 -20500557 - RMER12 LTR ERVK -364 958 664 1 1592 29 28 0 0 chr5 132036982 132037018 -20500241 + AT_rich Low_complexity Low_complexity 1 36 0 1 1592 557 249 92 43 chr5 132037019 132037204 -20500055 - ID_B1 SINE B4 -29 195 2 1 1592 1047 227 5 5 chr5 132038212 132038429 -20498830 + ID_B1 SINE B4 1 217 -7 1 1592 477 269 103 28 chr5 132038811 132038956 -20498303 + ID_B1 SINE B4 2 157 -67 1 1592 514 248 70 7 chr5 132039096 132039238 -20498021 + RSINE1 SINE B4 2 152 -13 1 1592 375 120 26 0 chr5 132039291 132039362 -20497897 + B1F SINE Alu 74 148 -1 1 1592 575 255 20 27 chr5 132039424 132039573 -20497686 - RSINE1 SINE B4 -14 151 4 1 1592 875 227 54 0 chr5 132040303 132040326 -20496933 - B3A SINE B2 -3 195 168 1 1592 198 0 0 0 chr5 132040326 132040348 -20496911 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1592 875 227 54 0 chr5 132040348 132040509 -20496750 - B3A SINE B2 -31 167 2 1 1592 324 257 0 0 chr5 132040665 132040739 -20496520 + PB1D10 SINE Alu 34 107 -10 1 1592 570 29 0 0 chr5 132040742 132040810 -20496449 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1592 234 150 0 0 chr5 132040974 132041014 -20496245 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1 1592 237 333 64 11 chr5 132041259 132041353 -20495906 + MLT1J LTR MaLR 100 198 -314 1 1592 231 88 0 0 chr5 132041590 132041624 -20495635 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 1 1592 212 175 25 0 chr5 132042381 132042421 -20494838 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1592 255 288 21 113 chr5 132042438 132042579 -20494680 - B4A SINE B4 0 292 165 1 1592 375 135 40 13 chr5 132042519 132042594 -20494665 - B1F1 SINE Alu -14 135 59 1 1592 418 190 25 0 chr5 132042601 132042680 -20494579 - B4A SINE B4 -53 239 159 1 1592 216 145 0 191 chr5 132042619 132042687 -20494572 - B1F SINE Alu -6 143 89 1 1592 338 245 46 93 chr5 132042700 132042808 -20494451 - B4A SINE B4 -189 103 1 1 1592 598 293 94 23 chr5 132042838 132043009 -20494250 - ID_B1 SINE B4 -41 183 1 1 1592 377 301 59 0 chr5 132043020 132043156 -20494103 - B1F2 SINE Alu -5 144 1 1 1592 189 253 187 0 chr5 132043357 132043432 -20493827 - MIRc SINE MIR -125 143 55 1 1592 492 289 16 89 chr5 132043519 132043615 -20493644 + B4 SINE B4 1 143 -81 1 1592 354 169 77 13 chr5 132043615 132043693 -20493566 + B1_Mus1 SINE Alu 2 84 -64 1 1592 492 289 16 89 chr5 132043693 132043725 -20493534 + B4 SINE B4 144 194 -30 1 1592 1010 61 22 7 chr5 132043799 132043939 -20493320 - B1_Mus2 SINE Alu -5 142 21 1 1592 453 19 0 0 chr5 132043963 132044017 -20493242 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1592 689 272 14 0 chr5 132044039 132044186 -20493073 - B3A SINE B2 -48 150 2 1 1592 710 249 127 31 chr5 132044186 132044392 -20492867 - B4A SINE B4 -59 233 6 1 1592 459 244 102 25 chr5 132045463 132045585 -20491674 - ID_B1 SINE B4 -17 207 81 1 1592 507 258 18 70 chr5 132045623 132045794 -20491465 - RSINE1 SINE B4 0 165 4 1 1592 615 288 31 85 chr5 132045797 132045882 -20491377 - ID_B1 SINE B4 -9 215 145 1 1592 1272 20 0 7 chr5 132045882 132046030 -20491229 - B1_Mus2 SINE Alu 0 147 1 1 1592 615 288 31 85 chr5 132046030 132046168 -20491091 - ID_B1 SINE B4 -80 144 4 1 1592 540 248 54 31 chr5 132046861 132046990 -20490269 - ID_B1 SINE B4 0 224 93 1 1592 1576 131 17 136 chr5 132046990 132047351 -20489908 + ORR1A4 LTR MaLR 1 318 -11 1 1592 630 250 6 47 chr5 132047442 132047614 -20489645 + Lx8 LINE L1 6247 6411 -1062 1 1592 982 109 0 7 chr5 132047616 132047754 -20489505 + B1_Mus1 SINE Alu 2 138 -10 1 1592 369 0 0 0 chr5 132047773 132047814 -20489445 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1592 210 289 33 0 chr5 132048001 132048091 -20489168 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1592 400 302 20 48 chr5 132048689 132048705 -20488554 - B4 SINE B4 -1 291 278 1 1592 369 0 0 0 chr5 132048705 132048746 -20488513 + (TATG)n Simple_repeat Simple_repeat 3 43 0 1 1592 400 302 20 48 chr5 132048746 132048875 -20488384 - B4 SINE B4 -15 277 150 1 1592 901 247 60 5 chr5 132048939 132049138 -20488121 - B3 SINE B2 -6 210 1 1 1592 207 0 0 0 chr5 132049146 132049169 -20488090 + (T)n Simple_repeat Simple_repeat 1 23 0 1 1592 205 194 0 0 chr5 132049777 132049813 -20487446 + (CCCTAG)n Simple_repeat Simple_repeat 2 37 0 1 1592 453 19 0 0 chr5 132050257 132050311 -20486948 + (CCA)n Simple_repeat Simple_repeat 1 54 0 1 1592 997 239 5 27 chr5 132051608 132051832 -20485427 - ID_B1 SINE B4 -1 223 5 1 1592 396 246 167 0 chr5 132052100 132052226 -20485033 - B1F1 SINE Alu -2 147 1 1 1592 429 318 76 38 chr5 132052540 132052697 -20484562 + B4A SINE B4 2 164 -128 1 1592 249 40 59 20 chr5 132052733 132052784 -20484475 + (TTTTG)n Simple_repeat Simple_repeat 3 55 0 1 1592 949 111 13 83 chr5 132052784 132052941 -20484318 - B1_Mur4 SINE Alu 0 150 5 1 1592 1019 239 177 8 chr5 132053241 132053507 -20483752 + ORR1E LTR MaLR 4 314 -45 1 1592 216 256 0 0 chr5 132053566 132053609 -20483650 + polypyrimidine Low_complexity Low_complexity 4 46 0 1 1592 502 310 6 60 chr5 132053617 132053785 -20483474 - RSINE1 SINE B4 -4 161 3 1 1592 336 234 0 0 chr5 132053900 132053964 -20483295 + 5S rRNA rRNA 38 101 -20 1 1592 559 246 0 31 chr5 132054307 132054437 -20482822 + RSINE1 SINE B4 3 128 -37 1 1592 309 314 44 93 chr5 132054437 132054511 -20482748 + B2_Mm2 SINE B2 2 195 0 1 1592 203 278 19 0 chr5 132054794 132054848 -20482411 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1592 441 240 0 88 chr5 132055290 132055404 -20481855 - B4A SINE B4 -188 104 1 1 1592 1048 250 18 67 chr5 132055687 132055970 -20481289 + B4A SINE B4 1 269 -23 1 1592 464 227 48 102 chr5 132056285 132056432 -20480827 + B1F1 SINE Alu 1 139 -10 1 1592 464 248 10 0 chr5 132056299 132056400 -20480859 + ID_B1 SINE B4 88 189 -35 1 1592 227 296 67 91 chr5 132056400 132056502 -20480757 - YREP_Mm Unknown Unknown -1497 310 113 1 1592 927 271 72 6 chr5 132056539 132056774 -20480485 + ID_B1 SINE B4 1 248 -44 1 1592 258 56 0 0 chr5 132057891 132057927 -20479332 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1592 749 317 49 9 chr5 132057952 132058178 -20479081 - B4A SINE B4 -6 286 52 1 1592 963 191 0 6 chr5 132058286 132058449 -20478810 - URR1B DNA MER1_type -63 162 1 1 1592 351 323 27 114 chr5 132058434 132058654 -20478605 + B3A SINE B2 3 203 -13 1 1592 452 246 162 97 chr5 132059246 132059394 -20477865 + B3A SINE B2 1 159 -39 1 1592 378 0 0 0 chr5 132059394 132059436 -20477823 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1592 452 246 162 97 chr5 132059436 132059472 -20477787 + B3A SINE B2 160 197 -1 1 1592 496 224 220 0 chr5 132060939 132061098 -20476161 + ID_B1 SINE B4 2 195 -29 1 1592 306 0 0 0 chr5 132061145 132061179 -20476080 + (CAGG)n Simple_repeat Simple_repeat 2 35 0 1 1592 486 88 0 0 chr5 132063379 132063447 -20473812 + (TAG)n Simple_repeat Simple_repeat 1 68 0 1 1592 268 264 23 11 chr5 132063451 132063539 -20473720 - ID_B1 SINE B4 -1 223 135 1 1592 486 250 121 0 chr5 132063547 132063679 -20473580 - B3A SINE B2 -50 148 1 1 1592 273 260 40 10 chr5 132063822 132063923 -20473336 - L1MA6 LINE L1 -119 6181 6078 1 1592 508 329 43 0 chr5 132064056 132064196 -20473063 + RSINE1 SINE B4 3 148 -17 1 1592 491 248 82 15 chr5 132064242 132064377 -20472882 + B1F2 SINE Alu 5 148 -1 1 1592 387 294 0 18 chr5 132064615 132064726 -20472533 + PB1D10 SINE Alu 1 109 -8 1 1592 288 0 0 0 chr5 132064730 132064762 -20472497 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1592 191 167 0 23 chr5 132064762 132064805 -20472454 + GA-rich Low_complexity Low_complexity 1 42 0 1 1592 962 155 0 26 chr5 132065052 132065204 -20472055 + B1_Mur3 SINE Alu 1 148 -1 1 1592 229 118 45 34 chr5 132065205 132065293 -20471966 + A-rich Low_complexity Low_complexity 2 90 0 1 1592 810 271 105 74 chr5 132065302 132065625 -20471634 - MTE2a LTR MaLR -46 333 1 1 1592 438 219 0 0 chr5 132066603 132066685 -20470574 - ID4 SINE ID 0 83 2 1 1592 319 287 19 65 chr5 132066694 132066802 -20470457 - B1F SINE Alu -2 147 45 1 1592 898 281 16 64 chr5 132067529 132067780 -20469479 - B4 SINE B4 -4 288 50 1 1592 1075 116 0 0 chr5 132068413 132068551 -20468708 + B1_Mus1 SINE Alu 1 138 -10 1 1592 25 51 0 0 chr5 132068646 132068685 -20468574 + AT_rich Low_complexity Low_complexity 1 39 0 1 1592 740 185 208 0 chr5 132068699 132068877 -20468382 + ID_B1 SINE B4 2 216 -8 1 1592 729 134 109 0 chr5 132068944 132069063 -20468196 + B1_Mur4 SINE Alu 2 133 -17 1 1592 207 389 54 24 chr5 132069181 132069347 -20467912 - L4 LINE RTE -405 1624 1454 1 1592 732 313 5 18 chr5 132069412 132069633 -20467626 + ID_B1 SINE B4 1 218 -6 1 1592 225 0 0 0 chr5 132069656 132069681 -20467578 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1592 566 197 197 0 chr5 132069736 132069863 -20467396 + MTEb LTR MaLR 223 374 -5 1 1592 379 286 12 0 chr5 132070133 132070217 -20467042 + ORR1E LTR MaLR 1 85 -274 1 1592 270 0 0 0 chr5 132070751 132070781 -20466478 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1592 328 294 26 35 chr5 132070843 132070889 -20466370 + PB1D10 SINE Alu 5 48 -69 2 1592 186 43 0 0 chr5 132070889 132070912 -20466347 + (G)n Simple_repeat Simple_repeat 1 23 0 2 1592 328 294 26 35 chr5 132070912 132070978 -20466281 + PB1D10 SINE Alu 49 116 -1 2 1592 315 313 12 133 chr5 132071043 132071132 -20466127 - Charlie12 DNA MER1_type -2695 178 93 2 1592 425 233 128 222 chr5 132071132 132071452 -20465807 + B4 SINE B4 2 291 -1 2 1592 315 313 12 133 chr5 132071452 132071535 -20465724 - Charlie12 DNA MER1_type -2781 92 27 2 1592 312 261 172 32 chr5 132071976 132072162 -20465097 + B3 SINE B2 2 213 -3 2 1592 243 0 0 0 chr5 132073194 132073221 -20464038 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1592 227 203 17 0 chr5 132073238 132073297 -20463962 + CT-rich Low_complexity Low_complexity 2 61 0 2 1592 504 0 0 0 chr5 132073346 132073402 -20463857 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1592 800 293 5 5 chr5 132073980 132074169 -20463090 + B3A SINE B2 1 189 -9 2 1592 387 222 92 17 chr5 132074386 132074505 -20462754 - MTD LTR MaLR -26 393 266 2 1592 313 337 0 44 chr5 132074516 132074606 -20462653 - MTD LTR MaLR -206 213 128 2 1592 735 243 16 6 chr5 132075027 132075212 -20462047 - B3A SINE B2 -28 188 4 2 1592 445 242 240 7 chr5 132075766 132075916 -20461343 - ID_B1 SINE B4 -35 189 5 2 1592 696 253 128 16 chr5 132077491 132077740 -20459519 - B4A SINE B4 -14 278 2 2 1592 324 0 0 0 chr5 132078164 132078200 -20459059 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1592 258 219 0 15 chr5 132078685 132078750 -20458509 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1592 394 239 92 50 chr5 132078750 132078869 -20458390 - B4 SINE B4 0 292 169 2 1592 334 218 64 82 chr5 132079049 132079159 -20458100 - B4 SINE B4 0 292 185 2 1592 603 277 158 5 chr5 132079175 132079378 -20457881 - B4A SINE B4 -58 234 1 2 1592 360 307 157 38 chr5 132079587 132079848 -20457411 - B4A SINE B4 0 292 1 2 1592 438 320 94 7 chr5 132080200 132080382 -20456877 - MLT1J LTR MaLR 0 512 256 2 1592 243 200 0 0 chr5 132080380 132080420 -20456839 - B4A SINE B4 -252 40 1 2 1592 612 232 84 52 chr5 132080451 132080642 -20456617 + B3A SINE B2 1 197 -1 2 1592 939 187 10 3 chr5 132081357 132081763 -20455496 + (TCCA)n Simple_repeat Simple_repeat 1 409 0 2 1592 480 279 94 50 chr5 132081884 132082065 -20455194 + RMER30 DNA MER1_type 11 199 -3 2 1592 464 203 32 24 chr5 132082402 132082660 -20454599 + GA-rich Low_complexity Low_complexity 1 260 0 2 1592 988 230 5 24 chr5 132083181 132083390 -20453869 + B3 SINE B2 12 216 0 2 1592 329 258 21 73 chr5 132083481 132083577 -20453682 - PB1D10 SINE Alu -1 116 26 2 1592 606 214 122 19 chr5 132083599 132083769 -20453490 - ID_B1 SINE B4 -46 246 53 2 1592 635 247 72 20 chr5 132083747 132083900 -20453359 + B4 SINE B4 118 278 -14 2 1592 366 61 0 0 chr5 132083903 132083952 -20453307 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1592 582 221 0 17 chr5 132084174 132084289 -20452970 - ID_B1 SINE B4 0 224 112 2 1592 261 0 0 0 chr5 132084289 132084318 -20452941 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2 1592 283 321 17 94 chr5 132084755 132084829 -20452430 - PB1D7 SINE Alu -12 108 45 2 1592 1018 131 178 0 chr5 132084829 132085020 -20452239 + URR1B DNA MER1_type 1 225 0 2 1592 283 321 17 94 chr5 132085020 132085062 -20452197 - PB1D7 SINE Alu -76 44 1 2 1592 711 217 109 16 chr5 132085285 132085468 -20451791 + B4 SINE B4 2 201 -91 2 1592 231 186 23 0 chr5 132085487 132085530 -20451729 + RMER15 LTR ERVL 532 575 0 2 1592 272 215 37 0 chr5 132086259 132086366 -20450893 + CT-rich Low_complexity Low_complexity 2 112 0 2 1592 532 224 201 10 chr5 132086370 132086522 -20450737 - ID_B1 SINE B4 -44 248 64 2 1592 275 232 43 14 chr5 132087015 132087085 -20450174 + ID SINE ID 2 73 -151 2 1592 288 0 0 0 chr5 132087099 132087131 -20450128 + (CA)n Simple_repeat Simple_repeat 1 32 0 2 1592 420 307 43 38 chr5 132087348 132087534 -20449725 + ORR1E LTR MaLR 1 187 -172 2 1592 228 391 120 39 chr5 132087645 132087879 -20449380 + LTR16A LTR ERVL 194 446 -5 2 1592 752 304 40 9 chr5 132087928 132088135 -20449124 + B4 SINE B4 15 228 -64 2 1592 508 283 102 31 chr5 132088135 132088361 -20448898 + B4 SINE B4 1 242 -50 2 1592 243 0 0 0 chr5 132088761 132088788 -20448471 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1592 621 215 121 12 chr5 132089002 132089167 -20448092 - B3A SINE B2 -2 196 14 2 1592 207 0 0 0 chr5 132090989 132091012 -20446247 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1592 603 27 0 0 chr5 132092803 132092876 -20444383 + (TC)n Simple_repeat Simple_repeat 1 73 0 2 1592 648 244 14 48 chr5 132092878 132093042 -20444217 - ID_B1 SINE B4 -47 245 86 2 1592 435 233 259 18 chr5 132093213 132093379 -20443880 - ID_B1 SINE B4 -14 210 5 2 1592 567 279 97 52 chr5 132093689 132093931 -20443328 - MTD LTR MaLR -136 283 9 2 1592 360 311 78 18 chr5 132094255 132094422 -20442837 + MER5A DNA MER1_type 7 183 -6 2 1592 587 212 50 8 chr5 132095025 132095144 -20442115 + RSINE1 SINE B4 4 127 -38 2 1592 212 252 171 74 chr5 132095144 132095201 -20442058 + B2_Mm2 SINE B2 3 195 0 2 1592 1248 48 0 0 chr5 132095202 132095348 -20441911 + B1_Mus2 SINE Alu 2 147 0 2 1592 189 94 0 0 chr5 132095360 132095392 -20441867 + (CAAG)n Simple_repeat Simple_repeat 2 33 0 2 1592 546 246 61 0 chr5 132095403 132095517 -20441742 - ID_B1 SINE B4 -20 204 84 2 1592 303 283 151 50 chr5 132095519 132095638 -20441621 - MIR SINE MIR -103 165 35 2 1592 562 327 68 39 chr5 132095685 132095965 -20441294 + B4A SINE B4 1 288 -4 2 1592 226 205 0 0 chr5 132096038 132096106 -20441153 + polypurine Low_complexity Low_complexity 1 68 0 2 1592 270 338 145 46 chr5 132096110 132096414 -20440845 + Charlie13a DNA Charlie 874 1207 -307 2 1592 302 250 81 71 chr5 132096639 132096738 -20440521 + RSINE1 SINE B4 2 101 -64 2 1592 316 311 19 19 chr5 132097136 132097241 -20440018 - ID_B1 SINE B4 -118 106 2 2 1592 643 297 10 45 chr5 132097473 132097674 -20439585 - B3A SINE B2 -3 195 2 2 1592 599 263 82 10 chr5 132097775 132097971 -20439288 + B3 SINE B2 1 210 -6 2 1592 605 288 82 10 chr5 132098080 132098287 -20438972 - ID_B1 SINE B4 0 224 3 2 1592 390 42 0 0 chr5 132098910 132098958 -20438301 + (TC)n Simple_repeat Simple_repeat 2 49 0 2 1592 419 219 0 12 chr5 132099011 132099094 -20438165 - ID4 SINE ID -1 82 1 2 1592 1614 37 0 0 chr5 132099094 132099569 -20437690 - ZP3AR Satellite Satellite -11 475 1 2 1592 479 207 0 11 chr5 132101270 132101358 -20435901 + RSINE1 SINE B4 25 111 -54 2 1592 762 255 36 36 chr5 132101441 132101661 -20435598 - ID_B1 SINE B4 -4 220 1 2 1592 684 269 40 12 chr5 132102150 132102323 -20434936 + B3A SINE B2 1 178 -20 2 1592 189 0 0 0 chr5 132102644 132102665 -20434594 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1592 254 82 41 0 chr5 132103063 132103112 -20434147 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 2 1592 1378 237 86 14 chr5 132103282 132103633 -20433626 + MTE2b LTR MaLR 1 376 -3 2 1592 2137 141 83 11 chr5 132103807 132104167 -20433092 + ORR1B1 LTR MaLR 1 386 -8 2 1592 579 304 51 0 chr5 132104172 132104330 -20432929 - ID_B1 SINE B4 -53 171 6 2 1592 1176 249 106 48 chr5 132104649 132105045 -20432214 - MTD LTR MaLR 0 419 1 2 1592 823 275 41 79 chr5 132105828 132106113 -20431146 + B4 SINE B4 2 277 -15 2 1592 600 53 0 0 chr5 132106113 132106189 -20431070 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 1592 348 24 0 0 chr5 132106189 132106229 -20431030 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1592 261 0 0 0 chr5 132106287 132106316 -20430943 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1592 22 0 0 0 chr5 132106906 132106928 -20430331 + AT_rich Low_complexity Low_complexity 1 22 0 2 1592 374 0 22 0 chr5 132107088 132107134 -20430125 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1592 417 349 54 0 chr5 132110684 132110833 -20426426 + RSINE1 SINE B4 9 165 0 2 1592 463 303 32 49 chr5 132111003 132111218 -20426041 - ID_B1 SINE B4 -1 223 17 2 1592 682 249 197 10 chr5 132111744 132111932 -20425327 + B4 SINE B4 5 230 -62 2 1592 511 273 60 15 chr5 132111932 132112066 -20425193 + RSINE1 SINE B4 2 141 -24 2 1592 414 57 0 0 chr5 132112076 132112129 -20425130 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1592 233 256 96 131 chr5 132112129 132112182 -20425077 + B2_Mm2 SINE B2 137 191 -4 2 1592 1334 125 21 17 chr5 132112691 132112917 -20424342 - MTC LTR MaLR 0 421 143 2 1592 578 288 75 0 chr5 132113381 132113527 -20423732 + RSINE1 SINE B4 3 159 -6 2 1592 6695 44 8 36 chr5 132113696 132114552 -20422707 + L1_Mus2 LINE L1 5735 6566 0 2 1592 525 104 0 0 chr5 132114565 132114642 -20422617 + (GAAA)n Simple_repeat Simple_repeat 3 79 0 2 1592 806 96 0 42 chr5 132114653 132114773 -20422486 + B1_Mus1 SINE Alu 27 141 -7 2 1592 891 70 0 0 chr5 132114781 132114909 -20422350 + (CCAA)n Simple_repeat Simple_repeat 4 131 0 2 1592 240 143 0 0 chr5 132115017 132115059 -20422200 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 2 1592 522 312 7 21 chr5 132115062 132115203 -20422056 - ID_B1 SINE B4 -17 207 69 2 1592 264 250 38 38 chr5 132115632 132115711 -20421548 - MER117 DNA MER1_type -23 174 96 2 1592 832 255 28 19 chr5 132116153 132116369 -20420890 - ID_B1 SINE B4 -2 222 5 2 1592 327 284 84 0 chr5 132116468 132116563 -20420696 + B1F1 SINE Alu 1 103 -46 2 1592 439 198 0 0 chr5 132116574 132116655 -20420604 + MTC LTR MaLR 1 81 -340 3 1592 859 59 76 0 chr5 132116648 132116766 -20420493 + B1_Mm SINE Alu 21 147 0 3 1592 219 139 0 0 chr5 132116766 132116802 -20420457 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1592 994 296 81 0 chr5 132116874 132117134 -20420125 - MTE2b LTR MaLR -98 281 1 3 1592 337 331 61 79 chr5 132117635 132117864 -20419395 + B4 SINE B4 78 270 -22 3 1592 465 209 0 0 chr5 132118127 132118213 -20419046 + B4 SINE B4 1 86 -206 3 1592 207 0 0 0 chr5 132118213 132118236 -20419023 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 3 1592 583 298 83 115 chr5 132118257 132118335 -20418924 + B4 SINE B4 10 81 -211 3 1592 333 0 0 0 chr5 132118335 132118372 -20418887 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1592 583 298 83 115 chr5 132118372 132118581 -20418678 + B4 SINE B4 82 288 -4 3 1592 312 27 0 0 chr5 132120122 132120159 -20417100 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 3 1592 339 65 0 0 chr5 132120265 132120311 -20416948 + (GA)n Simple_repeat Simple_repeat 1 46 0 3 1592 469 288 59 0 chr5 132120315 132120433 -20416826 - RSINE1 SINE B4 -31 134 10 3 1592 208 242 0 16 chr5 132120458 132120521 -20416738 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1593 412 163 51 61 chr5 132120650 132120748 -20416511 - B4A SINE B4 -194 98 2 3 1593 565 312 127 0 chr5 132120775 132120948 -20416311 + ID_B1 SINE B4 5 199 -25 3 1593 333 0 0 0 chr5 132120948 132120985 -20416274 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1593 219 139 0 0 chr5 132121396 132121432 -20415827 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1593 1207 68 0 0 chr5 132122863 132123009 -20414250 + B1_Mus2 SINE Alu 2 147 0 3 1593 243 0 0 0 chr5 132123020 132123047 -20414212 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 1593 1487 160 1 14 chr5 132124315 132124686 -20412573 + ZP3AR Satellite Satellite 1 366 0 3 1593 1456 137 14 0 chr5 132124812 132125031 -20412228 - URR1A DNA MER1_type 0 226 5 3 1593 240 35 0 0 chr5 132125106 132125135 -20412124 + (CATA)n Simple_repeat Simple_repeat 2 30 0 3 1593 877 239 108 36 chr5 132125830 132126108 -20411151 + ORR1E LTR MaLR 45 342 -17 3 1593 342 264 121 0 chr5 132127624 132127715 -20409544 + B1F SINE Alu 42 143 -6 3 1593 285 223 280 32 chr5 132127795 132127920 -20409339 + RSINE1 SINE B4 4 159 -6 3 1593 1332 89 17 0 chr5 132127999 132128179 -20409080 + B2_Mm2 SINE B2 2 184 -11 3 1593 264 30 0 0 chr5 132128179 132128212 -20409047 + (CAA)n Simple_repeat Simple_repeat 2 34 0 3 1593 265 337 11 0 chr5 132128412 132128507 -20408752 + RMER15 LTR ERVL 371 466 -109 3 1593 203 178 0 22 chr5 132128508 132128554 -20408705 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1593 305 219 13 64 chr5 132128555 132128633 -20408626 + HAL1-3A_ME LINE L1 1976 2049 -809 3 1593 568 268 107 71 chr5 132128739 132129020 -20408239 + B4 SINE B4 2 292 0 3 1593 552 225 225 0 chr5 132129483 132129656 -20407603 + ID_B1 SINE B4 2 213 -11 3 1593 324 0 0 0 chr5 132130757 132130793 -20406466 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 1593 776 302 10 5 chr5 132131153 132131346 -20405913 + ID_B1 SINE B4 2 195 -29 3 1593 598 315 55 6 chr5 132131328 132131510 -20405749 - ID_B1 SINE B4 -32 192 2 3 1593 366 304 80 15 chr5 132131694 132131831 -20405428 - RSINE1 SINE B4 -17 148 3 3 1593 345 24 0 0 chr5 132131837 132131879 -20405380 + (TC)n Simple_repeat Simple_repeat 2 43 0 3 1593 307 274 0 0 chr5 132131900 132131975 -20405284 - B4 SINE B4 -213 79 5 3 1593 225 94 0 0 chr5 132131979 132132011 -20405248 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1593 795 126 0 0 chr5 132132522 132132649 -20404610 + (GA)n Simple_repeat Simple_repeat 2 128 0 3 1593 268 311 95 0 chr5 132133075 132133149 -20404110 + PB1D10 SINE Alu 2 82 -35 3 1593 438 261 42 0 chr5 132133153 132133295 -20403964 + B1F SINE Alu 2 149 0 3 1593 802 97 1 13 chr5 132133299 132133423 -20403836 + ORR1B2 LTR MaLR 249 383 -1 3 1593 256 91 0 0 chr5 132133408 132133441 -20403818 + ID_B1 SINE B4 170 202 -22 3 1593 253 146 109 0 chr5 132133411 132133466 -20403793 + B1_Mm SINE Alu 64 124 -23 3 1593 190 357 116 23 chr5 132133467 132133682 -20403577 - L2a LINE L2 -82 3344 3110 3 1593 180 0 0 0 chr5 132134115 132134135 -20403124 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 3 1593 615 228 0 73 chr5 132134136 132134273 -20402986 - B1_Mur1 SINE Alu -15 134 8 3 1593 621 277 34 10 chr5 132134364 132134568 -20402691 + ID_B1 SINE B4 5 213 -11 3 1593 755 212 0 25 chr5 132135297 132135455 -20401804 - ID_B1 SINE B4 -8 216 72 3 1593 234 292 52 82 chr5 132135434 132135531 -20401728 - B3 SINE B2 0 216 123 3 1593 470 316 61 25 chr5 132135580 132135778 -20401481 + MTD LTR MaLR 1 205 -214 3 1593 237 242 15 61 chr5 132135811 132135877 -20401382 - B4A SINE B4 -203 89 27 3 1593 391 280 0 45 chr5 132136443 132136555 -20400704 + B1F SINE Alu 22 128 -21 3 1593 886 292 40 80 chr5 132136571 132136731 -20400528 + MTD LTR MaLR 15 211 -208 3 1593 1159 203 5 5 chr5 132136731 132136944 -20400315 + B3 SINE B2 3 215 -1 3 1593 886 290 27 76 chr5 132136944 132137155 -20400104 + MTD LTR MaLR 212 413 -6 3 1593 312 225 0 14 chr5 132137168 132137240 -20400019 + B3A SINE B2 1 71 -127 3 1593 481 170 24 24 chr5 132137423 132137592 -20399667 + (TA)n Simple_repeat Simple_repeat 2 170 0 3 1593 1567 49 11 0 chr5 132137602 132137901 -20399358 + ZP3AR Satellite Satellite 1 302 0 3 1593 261 176 20 0 chr5 132137856 132137907 -20399352 + ID4 SINE ID 1 52 -31 3 1593 361 263 16 73 chr5 132138122 132138245 -20399014 - PB1D10 SINE Alu -1 116 1 3 1593 188 319 120 11 chr5 132138472 132138564 -20398695 + L2a LINE L2 3315 3416 -10 3 1593 21 0 0 0 chr5 132139006 132139027 -20398232 + AT_rich Low_complexity Low_complexity 1 21 0 3 1593 221 216 0 0 chr5 132139041 132139078 -20398181 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1593 706 244 6 66 chr5 132139078 132139245 -20398014 - RSINE1 SINE B4 0 165 9 3 1593 1127 210 74 4 chr5 132139479 132139709 -20397550 + B4 SINE B4 20 265 -27 3 1593 1854 158 113 14 chr5 132139708 132140079 -20397180 + MTD LTR MaLR 12 419 0 3 1593 267 103 0 0 chr5 132141434 132141473 -20395786 + (CAGG)n Simple_repeat Simple_repeat 4 42 0 3 1593 183 42 0 0 chr5 132141705 132141729 -20395530 + (CTA)n Simple_repeat Simple_repeat 2 25 0 3 1593 837 30 0 0 chr5 132141737 132141837 -20395422 + (TG)n Simple_repeat Simple_repeat 2 101 0 3 1593 611 276 117 24 chr5 132141848 132142097 -20395162 - B4A SINE B4 -20 272 1 3 1593 238 330 0 11 chr5 132142488 132142577 -20394682 + (CA)n Simple_repeat Simple_repeat 1 88 0 3 1593 203 88 0 29 chr5 132143035 132143070 -20394189 + (TGGGGG)n Simple_repeat Simple_repeat 1 34 0 3 1593 283 161 62 31 chr5 132143080 132143144 -20394115 - MTEa LTR MaLR -112 267 202 3 1593 242 270 16 0 chr5 132143150 132143213 -20394046 + GA-rich Low_complexity Low_complexity 3 66 0 3 1593 309 207 244 0 chr5 132143216 132143298 -20393961 - MTEa LTR MaLR -258 121 20 3 1593 475 274 60 0 chr5 132143375 132143492 -20393767 - B3A SINE B2 -70 128 5 3 1593 367 257 172 68 chr5 132143519 132143711 -20393548 - ID_B1 SINE B4 -7 217 6 3 1593 444 19 0 0 chr5 132144606 132144659 -20392600 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 3 1593 198 0 0 0 chr5 132144670 132144692 -20392567 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 1593 565 187 9 70 chr5 132144698 132144813 -20392446 - B1_Mur2 SINE Alu -41 108 1 3 1593 774 254 0 11 chr5 132144850 132145033 -20392226 - B3A SINE B2 -16 182 2 3 1593 227 338 12 0 chr5 132145282 132145362 -20391897 + (TG)n Simple_repeat Simple_repeat 1 81 0 3 1593 257 315 139 64 chr5 132145456 132145482 -20391777 - B3A SINE B2 -11 187 2 3 1593 611 279 14 0 chr5 132145482 132145629 -20391630 - RSINE1 SINE B4 -14 151 3 3 1593 442 297 20 46 chr5 132145649 132145683 -20391576 - B1F2 SINE Alu 0 149 2 3 1593 568 239 8 8 chr5 132145683 132145801 -20391458 - B4 SINE B4 -88 204 87 3 1593 935 250 239 3 chr5 132146309 132146614 -20390645 - MTE2a LTR MaLR -2 377 1 3 1593 1015 261 12 35 chr5 132146955 132147213 -20390046 + B4A SINE B4 35 286 -6 3 1593 270 0 0 0 chr5 132147228 132147258 -20390001 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1593 879 218 83 0 chr5 132147384 132147577 -20389682 + B3 SINE B2 3 211 -5 3 1593 393 261 196 35 chr5 132147655 132147798 -20389461 - ID_B1 SINE B4 -55 169 4 3 1593 181 392 38 0 chr5 132148227 132148306 -20388953 + L2a LINE L2 3313 3394 -32 3 1593 1368 134 8 30 chr5 132148388 132148720 -20388539 + ZP3AR Satellite Satellite 1 324 -2 3 1593 389 196 289 0 chr5 132150040 132150137 -20387122 + B4 SINE B4 104 228 -64 3 1593 575 208 0 56 chr5 132150135 132150187 -20387072 + RSINE1 SINE B4 8 59 -106 3 1593 4219 88 41 12 chr5 132150187 132150771 -20386488 + MT2B LTR ERVL 1 601 0 3 1593 575 208 0 56 chr5 132150771 132150825 -20386434 + RSINE1 SINE B4 60 108 -57 3 1593 459 0 0 0 chr5 132151492 132151543 -20385716 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1593 939 253 105 35 chr5 132151543 132151794 -20385465 - B4 SINE B4 -21 271 2 3 1593 1764 163 73 12 chr5 132152489 132152830 -20384429 - ORR1D1 LTR MaLR -10 364 3 3 1593 255 170 0 0 chr5 132152926 132152973 -20384286 + GA-rich Low_complexity Low_complexity 4 50 0 3 1593 834 241 99 21 chr5 132152986 132153177 -20384082 + B4 SINE B4 85 290 -2 3 1593 199 177 0 31 chr5 132153852 132153916 -20383343 + CT-rich Low_complexity Low_complexity 3 64 0 4 1593 207 0 0 0 chr5 132153924 132153947 -20383312 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1593 2020 103 23 75 chr5 132155301 132155648 -20381611 - ORR1A4 LTR MaLR 0 329 1 4 1593 686 231 21 14 chr5 132155875 132156020 -20381239 - ID_B1 SINE B4 -67 157 12 4 1593 205 152 0 0 chr5 132157082 132157115 -20380144 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 4 1593 650 235 127 17 chr5 132157269 132157291 -20379968 - B3A SINE B2 -6 192 173 4 1593 270 0 0 0 chr5 132157291 132157321 -20379938 + (TG)n Simple_repeat Simple_repeat 2 31 0 4 1593 650 235 127 17 chr5 132157321 132157471 -20379788 - B3A SINE B2 -26 172 1 4 1593 300 120 0 0 chr5 132157503 132157553 -20379706 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 4 1593 329 281 0 24 chr5 132158063 132158147 -20379112 - ID4 SINE ID 0 83 2 4 1593 530 179 10 10 chr5 132158168 132158264 -20378995 + MTC LTR MaLR 326 421 0 4 1593 557 241 52 35 chr5 132158357 132158473 -20378786 + RSINE1 SINE B4 12 129 -36 4 1593 767 298 77 12 chr5 132158567 132158815 -20378444 + B4A SINE B4 2 265 -27 4 1593 235 221 131 83 chr5 132158816 132158900 -20378359 - PB1 SINE Alu -39 88 1 4 1593 3194 128 23 26 chr5 132159176 132159705 -20377554 + RLTR11A2 LTR ERVK 1 527 0 4 1593 909 210 89 136 chr5 132159868 132160250 -20377009 + ORR1E LTR MaLR 4 377 -2 4 1593 738 62 0 0 chr5 132160337 132160433 -20376826 + (GA)n Simple_repeat Simple_repeat 2 97 0 4 1593 351 0 0 0 chr5 132161106 132161145 -20376114 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 1593 537 236 42 14 chr5 132161150 132161292 -20375967 + B1F SINE Alu 1 146 -3 4 1593 388 310 89 27 chr5 132161469 132161615 -20375644 + RSINE1 SINE B4 3 157 -8 4 1593 195 100 0 0 chr5 132161635 132161665 -20375594 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1593 980 124 11 11 chr5 132161871 132162051 -20375208 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 4 1593 926 243 14 14 chr5 132162148 132162357 -20374902 - ID_B1 SINE B4 -9 215 7 4 1593 1708 315 57 6 chr5 132162948 132163478 -20373781 + L4 LINE RTE 1147 1703 -326 4 1593 435 275 40 32 chr5 132163482 132163604 -20373655 + ID_B1 SINE B4 79 201 -23 4 1593 723 269 30 25 chr5 132163604 132163802 -20373457 + B4 SINE B4 2 200 -92 4 1593 244 182 0 22 chr5 132163787 132163832 -20373427 + ORR1E LTR MaLR 312 355 -4 4 1593 194 358 62 21 chr5 132164157 132164254 -20373005 - MIRb SINE MIR -5 263 163 4 1593 367 309 21 0 chr5 132164329 132164423 -20372836 + PB1D10 SINE Alu 15 110 -7 4 1593 877 136 17 11 chr5 132164433 132164612 -20372647 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1593 352 100 62 0 chr5 132164663 132164743 -20372516 + (TA)n Simple_repeat Simple_repeat 1 85 0 4 1593 320 303 68 27 chr5 132164750 132164896 -20372363 + L1MCa LINE L1 1816 1967 -4541 4 1593 501 289 21 0 chr5 132164899 132165041 -20372218 + ZP3AR Satellite Satellite 44 188 -24 4 1593 258 337 0 46 chr5 132165001 132165088 -20372171 + ID4_ SINE ID 1 83 0 4 1593 392 234 43 0 chr5 132165432 132165526 -20371733 - PB1D10 SINE Alu -1 116 19 4 1593 691 193 67 27 chr5 132165456 132165605 -20371654 - ID_B1 SINE B4 -54 170 16 4 1593 378 311 141 25 chr5 132166045 132166243 -20371016 - MER2 DNA MER2_type -124 221 1 4 1593 433 255 94 7 chr5 132166276 132166414 -20370845 - RSINE1 SINE B4 -12 153 4 4 1593 408 176 0 0 chr5 132166607 132166709 -20370550 + CT-rich Low_complexity Low_complexity 2 103 0 4 1593 935 241 76 22 chr5 132166727 132167003 -20370256 - B4 SINE B4 0 292 2 4 1593 1334 141 11 0 chr5 132167633 132167886 -20369373 + ZP3AR Satellite Satellite 1 255 -1 4 1593 1238 224 57 25 chr5 132168072 132168352 -20368907 - B4 SINE B4 0 292 4 4 1593 240 179 73 15 chr5 132168642 132168710 -20368549 - MIRc SINE MIR -2 266 195 4 1593 527 0 0 16 chr5 132168854 132168918 -20368341 + (GGGAA)n Simple_repeat Simple_repeat 2 64 0 4 1593 267 79 0 0 chr5 132169024 132169062 -20368197 + (TCC)n Simple_repeat Simple_repeat 3 40 0 4 1593 292 168 0 3 chr5 132169063 132169114 -20368145 - PB1D10 SINE Alu -9 140 65 4 1593 225 0 0 0 chr5 132169118 132169143 -20368116 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1593 393 22 0 0 chr5 132169143 132169188 -20368071 + (GA)n Simple_repeat Simple_repeat 1 46 0 4 1593 958 215 77 9 chr5 132169194 132169415 -20367844 - B4 SINE B4 -55 237 2 4 1593 273 75 0 0 chr5 132170130 132170170 -20367089 + (GA)n Simple_repeat Simple_repeat 2 41 0 4 1593 1435 207 117 29 chr5 132170605 132170948 -20366311 - MTE2b LTR MaLR -4 375 3 4 1593 314 282 265 30 chr5 132171531 132171763 -20365496 + B4 SINE B4 3 276 -16 4 1593 193 109 0 42 chr5 132171772 132171813 -20365446 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1593 252 0 0 0 chr5 132171813 132171841 -20365418 + (GA)n Simple_repeat Simple_repeat 1 28 0 4 1593 193 109 0 42 chr5 132171841 132171847 -20365412 + (CA)n Simple_repeat Simple_repeat 2 7 0 4 1593 675 206 117 64 chr5 132172001 132172172 -20365087 + B3A SINE B2 1 180 -18 4 1593 498 70 0 0 chr5 132174216 132174287 -20362972 + (TCCC)n Simple_repeat Simple_repeat 4 74 0 4 1593 269 299 99 30 chr5 132174424 132174555 -20362704 - Charlie1b DNA MER1_type -28 495 356 4 1593 505 303 249 25 chr5 132174563 132174800 -20362459 + B4 SINE B4 2 291 -1 4 1593 625 282 23 23 chr5 132174935 132175109 -20362150 - Charlie1b DNA MER1_type -276 247 74 4 1593 766 269 15 184 chr5 132175101 132175308 -20361951 - B3A SINE B2 -16 182 8 4 1593 978 268 40 148 chr5 132175430 132175855 -20361404 - MTE2a LTR MaLR 0 379 1 4 1593 207 0 0 0 chr5 132176304 132176327 -20360932 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1593 746 245 93 20 chr5 132176327 132176522 -20360737 - ID_B1 SINE B4 -11 213 2 4 1593 199 370 93 0 chr5 132176595 132176703 -20360556 + L2a LINE L2 3288 3405 -21 4 1593 315 0 0 0 chr5 132177639 132177674 -20359585 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 4 1593 180 0 0 0 chr5 132177907 132177927 -20359332 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4 1593 180 125 0 0 chr5 132178098 132178130 -20359129 + (CAGAGA)n Simple_repeat Simple_repeat 3 34 0 4 1593 924 284 40 12 chr5 132178132 132178381 -20358878 - B4A SINE B4 -35 257 2 4 1593 905 229 5 40 chr5 132179207 132179430 -20357829 - ID_B1 SINE B4 -6 218 4 4 1593 214 256 90 34 chr5 132180309 132180329 -20356930 - ID_B1 SINE B4 -126 98 5 4 1593 245 235 101 14 chr5 132180329 132180398 -20356861 - ID4 SINE ID -4 79 5 4 1593 294 261 15 0 chr5 132180359 132180424 -20356835 - ZP3AR Satellite Satellite -126 86 21 4 1593 599 289 62 74 chr5 132180831 132181074 -20356185 + B4A SINE B4 4 243 -49 4 1593 1363 181 121 32 chr5 132181081 132181395 -20355864 + MTD LTR MaLR 1 342 -77 4 1593 495 48 0 0 chr5 132181413 132181475 -20355784 + (TCCA)n Simple_repeat Simple_repeat 1 62 0 4 1593 794 188 6 0 chr5 132181490 132181660 -20355599 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 4 1593 253 204 19 0 chr5 132181690 132181744 -20355515 - MTD LTR MaLR -60 359 305 4 1593 632 251 227 65 chr5 132181956 132182203 -20355056 - B4 SINE B4 0 292 6 4 1593 3180 122 26 38 chr5 132182345 132182873 -20354386 + RLTR28 LTR ERVL 1 522 -2 4 1593 1140 195 15 0 chr5 132182930 132183135 -20354124 - B3 SINE B2 -7 209 2 4 1593 221 163 0 20 chr5 132183155 132183205 -20354054 + GA-rich Low_complexity Low_complexity 3 51 0 4 1593 405 0 0 0 chr5 132184093 132184138 -20353121 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1593 275 324 53 42 chr5 132184188 132184274 -20352985 + B2_Mm2 SINE B2 3 86 -109 4 1593 2768 149 66 98 chr5 132184274 132184867 -20352392 + RMER15 LTR ERVL 1 574 -1 4 1593 569 235 84 39 chr5 132184867 132184935 -20352324 + RSINE1 SINE B4 88 164 -1 4 1593 275 324 53 42 chr5 132184935 132184970 -20352289 + B2_Mm2 SINE B2 87 194 -1 4 1593 802 184 7 13 chr5 132184974 132185123 -20352136 + B1_Mur4 SINE Alu 3 150 0 4 1593 189 290 193 29 chr5 132185143 132185270 -20351989 + L2a LINE L2 3039 3187 -239 4 1593 1183 220 5 0 chr5 132185270 132185493 -20351766 - ID_B1 SINE B4 0 224 1 4 1593 189 290 193 29 chr5 132185493 132185603 -20351656 + L2a LINE L2 3188 3314 -112 4 1593 922 263 138 9 chr5 132185797 132186131 -20351128 - MTEa LTR MaLR -2 377 1 4 1593 279 0 0 0 chr5 132186381 132186412 -20350847 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1593 236 182 0 22 chr5 132187836 132187881 -20349378 + ID SINE ID 2 45 -179 4 1593 279 198 0 189 chr5 132187955 132188048 -20349211 - RSINE1 SINE B4 -53 112 38 4 1593 593 183 121 71 chr5 132188048 132188189 -20349070 - B1_Mur1 SINE Alu 0 149 2 4 1593 279 198 0 189 chr5 132188189 132188201 -20349058 - RSINE1 SINE B4 -128 37 27 4 1593 189 0 0 0 chr5 132188458 132188479 -20348780 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1593 847 249 18 0 chr5 132188484 132188649 -20348610 - B3A SINE B2 -30 168 1 4 1593 228 67 0 0 chr5 132188663 132188693 -20348566 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 4 1593 26 64 0 0 chr5 132188870 132188917 -20348342 + AT_rich Low_complexity Low_complexity 1 47 0 4 1593 731 239 7 14 chr5 132189339 132189506 -20347753 - ID_B1 SINE B4 -69 223 65 4 1593 324 0 0 0 chr5 132189557 132189593 -20347666 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1593 879 112 0 68 chr5 132189615 132189837 -20347422 + (TA)n Simple_repeat Simple_repeat 1 206 0 4 1593 199 281 15 45 chr5 132190210 132190277 -20346982 + MIR SINE MIR 59 123 -85 4 1593 233 339 0 30 chr5 132190330 132190397 -20346862 - ID4_ SINE ID -18 65 1 4 1593 394 222 16 107 chr5 132190353 132190474 -20346785 - ZP3AR Satellite Satellite -78 134 25 4 1593 396 307 0 10 chr5 132190769 132190871 -20346388 - RSINE1 SINE B4 -16 149 49 4 1593 681 204 6 65 chr5 132191234 132191402 -20345857 - B3A SINE B2 -5 193 36 5 1593 706 244 15 75 chr5 132191485 132191684 -20345575 - B3 SINE B2 -13 203 17 5 1593 716 267 38 52 chr5 132191691 132191904 -20345355 - B4 SINE B4 -82 210 1 5 1593 309 259 0 47 chr5 132192854 132192939 -20344320 - B1F SINE Alu -3 146 66 5 1593 314 217 0 48 chr5 132192991 132193054 -20344205 - B1_Mus2 SINE Alu -22 125 66 5 1593 443 303 40 16 chr5 132193052 132193176 -20344083 - B1F SINE Alu -22 127 1 5 1593 687 226 53 106 chr5 132195241 132195449 -20341810 + B3A SINE B2 1 197 -1 5 1593 1184 222 55 39 chr5 132195462 132195771 -20341488 + Lx8 LINE L1 7151 7464 -9 5 1593 790 260 11 16 chr5 132195811 132195995 -20341264 + B4 SINE B4 103 285 -7 5 1593 570 313 50 39 chr5 132197080 132197363 -20339896 + B4 SINE B4 1 286 -6 5 1593 734 256 109 47 chr5 132197487 132197762 -20339497 + B4A SINE B4 1 292 0 5 1593 238 167 33 0 chr5 132197762 132197822 -20339437 + (CA)n Simple_repeat Simple_repeat 1 62 0 5 1593 345 192 170 88 chr5 132199275 132199295 -20337964 - B2_Mm2 SINE B2 -9 186 2 5 1593 796 232 26 0 chr5 132199295 132199446 -20337813 - RSINE1 SINE B4 -8 157 3 5 1593 218 308 0 58 chr5 132199545 132199614 -20337645 - ID4 SINE ID 0 83 19 5 1593 252 0 0 0 chr5 132199902 132199930 -20337329 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1593 446 302 8 16 chr5 132200107 132200228 -20337031 - B4A SINE B4 -172 120 1 5 1593 501 294 69 25 chr5 132201006 132201208 -20336051 + RMER15 LTR ERVL 352 562 -13 5 1593 288 186 51 0 chr5 132201215 132201274 -20335985 - ID_B1 SINE B4 -17 207 146 5 1593 225 256 82 72 chr5 132201274 132201312 -20335947 - PB1D10 SINE Alu -17 100 3 5 1593 251 267 92 13 chr5 132202403 132202479 -20334780 - ID4 SINE ID -1 82 1 5 1593 549 188 100 50 chr5 132202458 132202598 -20334661 - ZP3AR Satellite Satellite -43 169 23 5 1593 245 207 17 0 chr5 132202721 132202779 -20334480 + GA-rich Low_complexity Low_complexity 2 60 0 5 1593 255 152 0 0 chr5 132203664 132203710 -20333549 + (TGG)n Simple_repeat Simple_repeat 1 46 0 5 1593 782 209 13 25 chr5 132203721 132203878 -20333381 + RSINE1 SINE B4 11 165 0 5 1593 613 252 65 56 chr5 132203914 132204128 -20333131 + ID_B1 SINE B4 4 219 -5 5 1593 24 32 0 0 chr5 132204767 132204798 -20332461 + AT_rich Low_complexity Low_complexity 1 31 0 5 1593 1122 281 7 29 chr5 132204851 132205126 -20332133 + B4 SINE B4 1 269 -23 5 1593 513 47 0 0 chr5 132205130 132205194 -20332065 + (CA)n Simple_repeat Simple_repeat 2 65 0 5 1593 2589 157 62 14 chr5 132206016 132206519 -20330740 + RLTR11A2 LTR ERVK 1 527 0 5 1593 569 107 541 18 chr5 132206701 132206871 -20330388 - ORR1A3 LTR MaLR -67 259 1 5 1593 616 288 112 50 chr5 132207208 132207468 -20329791 + B4A SINE B4 17 292 0 5 1593 578 221 159 0 chr5 132207877 132208022 -20329237 - B3A SINE B2 -30 168 1 5 1593 597 279 0 35 chr5 132208090 132208231 -20329028 + RSINE1 SINE B4 1 136 -29 5 1593 424 48 0 31 chr5 132208233 132208298 -20328961 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1593 597 257 77 33 chr5 132208421 132208602 -20328657 + B4 SINE B4 10 198 -94 5 1593 787 287 60 53 chr5 132208808 132209091 -20328168 + B4 SINE B4 8 292 0 5 1593 782 249 24 14 chr5 132209717 132209925 -20327334 - ID_B1 SINE B4 -14 210 1 5 1593 1246 249 77 20 chr5 132209973 132210325 -20326934 + MTEa LTR MaLR 4 375 -4 5 1593 243 0 0 0 chr5 132210488 132210515 -20326744 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 5 1593 603 264 71 25 chr5 132210727 132210925 -20326334 + B3 SINE B2 1 207 -9 5 1593 728 233 161 0 chr5 132211916 132212096 -20325163 - B4A SINE B4 -81 211 3 5 1593 516 59 0 0 chr5 132212279 132212347 -20324912 + (CA)n Simple_repeat Simple_repeat 1 68 0 5 1593 402 271 37 44 chr5 132212615 132212629 -20324630 - B1_Mm SINE Alu 0 147 14 5 1593 646 231 8 0 chr5 132212629 132212750 -20324509 - ID_B1 SINE B4 -8 216 95 5 1593 823 270 87 26 chr5 132212791 132213057 -20324202 + B4A SINE B4 1 282 -10 5 1593 297 0 0 0 chr5 132213097 132213130 -20324129 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1593 419 0 20 0 chr5 132213936 132213987 -20323272 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1593 842 272 45 133 chr5 132214022 132214116 -20323143 - B4A SINE B4 0 292 227 5 1593 578 235 144 21 chr5 132214116 132214303 -20322956 - ID_B1 SINE B4 -14 210 1 5 1593 842 272 45 133 chr5 132214303 132214517 -20322742 - B4A SINE B4 -66 226 11 5 1593 24 0 0 0 chr5 132214962 132214986 -20322273 + AT_rich Low_complexity Low_complexity 1 24 0 5 1593 505 234 0 9 chr5 132215216 132215315 -20321944 + PB1D10 SINE Alu 9 107 -10 5 1593 591 15 0 0 chr5 132215315 132215383 -20321876 + (CCA)n Simple_repeat Simple_repeat 3 70 0 5 1593 602 357 14 10 chr5 132215404 132215693 -20321566 + B4A SINE B4 2 291 -1 5 1593 427 283 199 6 chr5 132216734 132216915 -20320344 - ID_B1 SINE B4 -7 217 2 5 1593 268 284 83 92 chr5 132217505 132217625 -20319634 - B4 SINE B4 -12 280 162 5 1593 308 286 153 0 chr5 132217577 132217675 -20319584 - PB1D10 SINE Alu -1 116 4 5 1593 331 275 215 78 chr5 132217675 132217871 -20319388 - B4 SINE B4 -62 230 7 5 1593 244 309 73 178 chr5 132218114 132218199 -20319060 + B4A SINE B4 10 89 -203 5 1593 566 206 117 107 chr5 132218199 132218395 -20318864 + B3A SINE B2 1 198 0 5 1593 297 298 72 127 chr5 132218395 132218608 -20318651 + B4 SINE B4 81 279 -13 5 1593 510 114 0 0 chr5 132218608 132218687 -20318572 + (CA)n Simple_repeat Simple_repeat 2 80 0 5 1593 297 298 72 126 chr5 132218687 132218702 -20318557 + B4 SINE B4 280 291 -1 5 1593 296 200 227 0 chr5 132219354 132219429 -20317830 - B1_Mus1 SINE Alu -55 93 2 5 1593 576 185 103 16 chr5 132219559 132219685 -20317574 - B1_Mur1 SINE Alu 0 149 13 5 1593 847 121 209 27 chr5 132220054 132220241 -20317018 + URR1B DNA MER1_type 5 225 0 5 1593 431 293 55 59 chr5 132220309 132220545 -20316714 + RMER15 LTR ERVL 341 575 0 5 1593 342 123 0 0 chr5 132220902 132220959 -20316300 + (TCC)n Simple_repeat Simple_repeat 2 58 0 5 1593 775 254 28 14 chr5 132220987 132221199 -20316060 - B3 SINE B2 0 216 2 5 1593 493 210 0 16 chr5 132221366 132221492 -20315767 - L1ME2z LINE L1 -13 6431 6308 5 1593 528 59 0 0 chr5 132221577 132221645 -20315614 + (TCCC)n Simple_repeat Simple_repeat 1 68 0 5 1593 236 332 91 122 chr5 132221669 132221923 -20315336 - B4 SINE B4 0 292 47 5 1593 844 207 14 0 chr5 132221960 132222100 -20315159 - B1_Mur2 SINE Alu -3 146 5 5 1593 237 211 115 0 chr5 132222528 132222580 -20314679 + RLTR19 LTR ERVK 326 383 -116 5 1593 182 156 0 0 chr5 132222640 132222672 -20314587 + MIR SINE MIR 112 143 -119 5 1593 1446 231 62 8 chr5 132222787 132223145 -20314114 + MTEb LTR MaLR 1 377 -2 5 1593 665 236 133 0 chr5 132223917 132224112 -20313147 + ID_B1 SINE B4 4 224 0 5 1593 205 222 0 18 chr5 132224536 132224591 -20312668 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 5 1593 632 298 109 19 chr5 132225885 132226111 -20311148 + B4A SINE B4 2 248 -44 5 1593 252 0 0 0 chr5 132226111 132226139 -20311120 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1593 632 298 109 19 chr5 132226139 132226179 -20311080 + B4A SINE B4 249 291 -1 5 1593 309 82 0 0 chr5 132226601 132226650 -20310609 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 5 1593 212 252 73 130 chr5 132227066 132227189 -20310070 + B3A SINE B2 77 192 -6 5 1593 711 266 80 73 chr5 132227411 132227426 -20309833 + B4 SINE B4 3 19 -273 5 1593 500 0 17 0 chr5 132227426 132227486 -20309773 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1593 711 266 80 73 chr5 132227486 132227758 -20309501 + B4 SINE B4 20 292 0 5 1593 443 331 73 0 chr5 132228151 132228287 -20308972 + B3A SINE B2 36 181 -17 5 1593 645 170 15 73 chr5 132228346 132228517 -20308742 + RSINE1 SINE B4 1 163 -2 5 1593 985 129 0 0 chr5 132228543 132228683 -20308576 + B1_Mur4 SINE Alu 1 140 -10 5 1593 22 0 0 0 chr5 132228683 132228705 -20308554 + AT_rich Low_complexity Low_complexity 1 22 0 5 1593 516 250 95 0 chr5 132228779 132228895 -20308364 + ID_B1 SINE B4 90 216 -8 5 1593 369 304 36 61 chr5 132229104 132229300 -20307959 - MTEa LTR MaLR -21 358 168 5 1593 839 268 33 0 chr5 132229625 132229838 -20307421 - ID_B1 SINE B4 0 224 5 5 1593 686 245 101 0 chr5 132230297 132230485 -20306774 - ID_B1 SINE B4 -15 209 3 5 1593 342 340 90 76 chr5 132230517 132230740 -20306519 - B4A SINE B4 0 292 67 5 1593 792 132 0 0 chr5 132231091 132231220 -20306039 + (GAA)n Simple_repeat Simple_repeat 3 131 0 5 1593 1257 73 0 0 chr5 132231222 132231400 -20305859 + (GGA)n Simple_repeat Simple_repeat 3 180 0 5 1593 1215 89 0 0 chr5 132231419 132231598 -20305661 + (GGA)n Simple_repeat Simple_repeat 2 180 0 5 1593 774 240 138 67 chr5 132231792 132232060 -20305199 - B4A SINE B4 -3 289 3 5 1593 475 217 17 42 chr5 132232169 132232289 -20304970 + PB1D10 SINE Alu 1 117 0 5 1593 506 315 83 23 chr5 132232995 132233261 -20303998 - B4A SINE B4 -10 282 1 5 1593 459 286 173 11 chr5 132233279 132233470 -20303789 - ID_B1 SINE B4 -2 222 1 5 1593 372 314 87 45 chr5 132233500 132233787 -20303472 + MamRep434 DNA TcMar 108 406 -20 5 1593 325 242 167 10 chr5 132233881 132233977 -20303282 + RSINE1 SINE B4 2 112 -53 5 1593 339 119 0 0 chr5 132233979 132234046 -20303213 + (CA)n Simple_repeat Simple_repeat 2 68 0 5 1593 227 209 28 69 chr5 132234097 132234169 -20303090 + MIRc SINE MIR 130 198 -70 6 1593 238 261 0 84 chr5 132234289 132234360 -20302899 + MIR3 SINE MIR 98 162 -46 6 1593 234 0 0 0 chr5 132234367 132234393 -20302866 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1593 714 264 37 47 chr5 132234393 132234608 -20302651 - ID_B1 SINE B4 -10 214 2 6 1593 673 289 69 10 chr5 132234625 132234828 -20302431 - ID_B1 SINE B4 -7 217 3 6 1593 553 283 77 77 chr5 132234828 132235035 -20302224 - ID_B1 SINE B4 0 224 18 6 1593 276 232 36 12 chr5 132235712 132235795 -20301464 + GA-rich Low_complexity Low_complexity 5 89 0 6 1593 207 0 0 0 chr5 132236442 132236465 -20300794 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1593 856 214 45 75 chr5 132236632 132237037 -20300222 + ORR1E LTR MaLR 30 383 -1 6 1593 641 243 7 35 chr5 132237870 132238015 -20299244 - B1_Mur1 SINE Alu -8 141 1 6 1593 968 256 139 8 chr5 132238465 132238717 -20298542 - B4 SINE B4 -2 290 6 6 1593 866 238 6 12 chr5 132239632 132239802 -20297457 + ID_B1 SINE B4 3 171 -53 6 1593 189 0 0 0 chr5 132239810 132239831 -20297428 + (CCCCCA)n Simple_repeat Simple_repeat 6 26 0 6 1593 563 352 12 0 chr5 132240162 132240324 -20296935 + RSINE1 SINE B4 2 165 0 6 1593 218 309 56 83 chr5 132240171 132240351 -20296908 + B2_Mm2 SINE B2 10 184 -11 6 1593 749 261 167 47 chr5 132241184 132241441 -20295818 - B4A SINE B4 -3 289 2 6 1593 692 268 52 9 chr5 132241779 132241990 -20295269 - ID_B1 SINE B4 -4 220 1 6 1593 582 218 35 57 chr5 132242243 132242384 -20294875 + B1_Mur2 SINE Alu 3 140 -9 6 1593 188 292 48 77 chr5 132242984 132243088 -20294171 - L3 LINE CR1 -3593 896 796 6 1593 347 346 0 0 chr5 132244578 132244679 -20292580 - PB1D10 SINE Alu -2 115 15 6 1593 540 309 197 4 chr5 132244706 132244950 -20292309 + B4 SINE B4 2 292 0 6 1593 752 282 72 5 chr5 132247144 132247351 -20289908 + MTEb LTR MaLR 16 236 -143 6 1593 1829 156 85 17 chr5 132247351 132247703 -20289556 + ORR1C2 LTR MaLR 1 376 -8 6 1593 527 281 37 7 chr5 132247703 132247839 -20289420 + MTEb LTR MaLR 232 371 -8 6 1593 897 290 20 65 chr5 132248039 132248345 -20288914 + B4 SINE B4 1 292 0 6 1593 566 296 20 7 chr5 132249015 132249168 -20288091 + RSINE1 SINE B4 3 157 -8 6 1593 554 95 11 0 chr5 132249190 132249285 -20287974 + (CA)n Simple_repeat Simple_repeat 1 96 0 6 1593 370 259 12 3 chr5 132249354 132249695 -20287564 + (CA)n Simple_repeat Simple_repeat 1 343 0 6 1593 431 282 14 0 chr5 132249707 132249849 -20287410 + (CA)n Simple_repeat Simple_repeat 1 144 0 6 1593 414 0 0 0 chr5 132250205 132250251 -20287008 + (CA)n Simple_repeat Simple_repeat 2 47 0 6 1593 313 273 0 25 chr5 132250254 132250333 -20286926 - ID_B1 SINE B4 -32 192 116 6 1593 362 118 42 42 chr5 132250704 132250775 -20286484 - ID4_ SINE ID -11 72 2 6 1593 663 13 0 0 chr5 132251523 132251599 -20285660 + (GA)n Simple_repeat Simple_repeat 2 77 0 6 1594 237 65 0 0 chr5 132252489 132252520 -20284739 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 6 1594 390 273 100 57 chr5 132252521 132252731 -20284528 - ID_B1 SINE B4 -5 219 1 6 1594 22 0 0 0 chr5 132252736 132252758 -20284501 + AT_rich Low_complexity Low_complexity 1 22 0 6 1594 483 270 7 13 chr5 132252781 132252931 -20284328 + B1_Mur2 SINE Alu 1 149 0 6 1594 2389 179 5 17 chr5 132253356 132253772 -20283487 + MTC LTR MaLR 11 421 0 6 1594 423 56 0 0 chr5 132253966 132254020 -20283239 + (TCCA)n Simple_repeat Simple_repeat 4 57 0 6 1594 476 258 72 13 chr5 132254041 132254194 -20283065 + RSINE1 SINE B4 4 165 0 6 1594 876 280 62 33 chr5 132255508 132255781 -20281478 - B4A SINE B4 0 292 12 6 1594 233 217 0 0 chr5 132256202 132256262 -20280997 + A-rich Low_complexity Low_complexity 5 64 0 6 1594 511 264 90 15 chr5 132256318 132256518 -20280741 - ID_B1 SINE B4 -7 217 3 6 1594 188 250 72 135 chr5 132257655 132257715 -20279544 + MIRb SINE MIR 48 95 -173 6 1594 880 203 87 0 chr5 132257715 132257863 -20279396 + URR1A DNA MER1_type 2 166 -60 6 1594 333 0 0 0 chr5 132257863 132257900 -20279359 + (TG)n Simple_repeat Simple_repeat 1 37 0 6 1594 880 203 87 0 chr5 132257900 132257958 -20279301 + URR1A DNA MER1_type 167 225 -1 6 1594 188 250 72 135 chr5 132257958 132258008 -20279251 + MIRb SINE MIR 96 151 -117 6 1594 249 33 0 0 chr5 132258079 132258109 -20279150 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1594 229 283 17 0 chr5 132258199 132258259 -20279000 - ID_B1 SINE B4 -22 202 142 6 1594 620 316 59 49 chr5 132258320 132258606 -20278653 - B4A SINE B4 -3 289 1 6 1594 291 54 0 0 chr5 132258811 132258848 -20278411 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 6 1594 442 213 31 21 chr5 132259495 132259591 -20277668 - ZP3AR Satellite Satellite -74 138 42 6 1594 470 266 31 8 chr5 132259628 132259757 -20277502 - B1F SINE Alu -8 141 10 6 1594 744 251 87 5 chr5 132260709 132260894 -20276365 - B3A SINE B2 -8 187 1 6 1594 7693 46 48 2 chr5 132260953 132261903 -20275356 + L1Md_F2 LINE L1 5587 6580 -2 6 1594 636 192 102 16 chr5 132261921 132262048 -20275211 + B1_Mm SINE Alu 10 147 0 6 1594 35 24 0 0 chr5 132262053 132262095 -20275164 + AT_rich Low_complexity Low_complexity 1 42 0 6 1594 766 263 125 19 chr5 132262368 132262624 -20274635 + B4A SINE B4 2 284 -8 6 1594 396 0 0 0 chr5 132262761 132262805 -20274454 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1594 904 322 62 46 chr5 132262823 132263194 -20274065 + MTE2a LTR MaLR 1 377 -2 6 1594 491 269 107 8 chr5 132264655 132264786 -20272473 - RSINE1 SINE B4 -12 153 10 6 1594 227 344 91 8 chr5 132264951 132265083 -20272176 - RSINE1 SINE B4 -19 146 4 6 1594 357 221 16 1 chr5 132266046 132266144 -20271115 + L1M LINE L1 5328 5428 -812 6 1594 948 65 0 0 chr5 132266315 132266439 -20270820 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 6 1594 788 206 7 0 chr5 132266439 132266580 -20270679 - B1_Mur2 SINE Alu -7 142 1 6 1594 574 239 21 14 chr5 132266688 132266832 -20270427 + B1F2 SINE Alu 4 148 -1 6 1594 396 291 265 26 chr5 132266832 132267059 -20270200 + B4 SINE B4 12 292 0 6 1594 207 220 0 0 chr5 132267076 132267126 -20270133 + (TA)n Simple_repeat Simple_repeat 2 51 0 6 1594 189 107 0 0 chr5 132267344 132267372 -20269887 + (TCC)n Simple_repeat Simple_repeat 3 30 0 6 1594 1136 284 59 14 chr5 132267660 132268014 -20269245 - MTD LTR MaLR -37 382 13 6 1594 390 94 0 0 chr5 132268236 132268300 -20268959 + (TC)n Simple_repeat Simple_repeat 1 64 0 6 1594 26 30 0 0 chr5 132268425 132268458 -20268801 + AT_rich Low_complexity Low_complexity 1 33 0 6 1594 253 224 43 29 chr5 132268558 132268627 -20268632 - B4A SINE B4 -211 81 12 6 1594 609 271 162 24 chr5 132268898 132269151 -20268108 - B4 SINE B4 -4 288 1 6 1594 804 199 117 25 chr5 132269374 132269570 -20267689 - ID_B1 SINE B4 -8 216 3 6 1594 306 298 92 60 chr5 132269571 132269766 -20267493 + MIRb SINE MIR 56 252 -10 6 1594 288 158 0 0 chr5 132270099 132270156 -20267103 + A-rich Low_complexity Low_complexity 1 57 0 6 1594 845 228 67 5 chr5 132271567 132271761 -20265498 - ID_B1 SINE B4 -15 209 4 6 1594 291 276 98 35 chr5 132272382 132272555 -20264704 + Lx8 LINE L1 7040 7223 -250 6 1594 489 34 0 0 chr5 132272642 132272701 -20264558 + (GA)n Simple_repeat Simple_repeat 1 59 0 6 1594 310 265 29 58 chr5 132272738 132272842 -20264417 + RMER15 LTR ERVL 422 522 -53 6 1594 212 365 135 19 chr5 132273034 132273241 -20264018 - MIRc SINE MIR -7 261 31 6 1594 267 333 92 25 chr5 132273999 132274119 -20263140 + B4A SINE B4 149 276 -16 6 1594 396 0 0 0 chr5 132274134 132274178 -20263081 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1594 441 0 0 0 chr5 132274952 132275001 -20262258 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 6 1594 2483 72 34 45 chr5 132275082 132275462 -20261797 - L1_Mus4 LINE L1 0 6636 6261 6 1594 577 66 0 0 chr5 132275464 132275540 -20261719 + L1_Mus4 LINE L1 5904 5979 -657 6 1594 242 262 0 32 chr5 132275540 132275603 -20261656 - B4A SINE B4 -230 62 2 6 1594 463 279 128 34 chr5 132275988 132276117 -20261142 - B4 SINE B4 -69 223 91 6 1594 198 71 0 0 chr5 132276117 132276145 -20261114 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 6 1594 463 279 128 34 chr5 132276145 132276219 -20261040 - B4 SINE B4 -202 90 1 6 1594 243 273 18 0 chr5 132276275 132276330 -20260929 - B4A SINE B4 -195 97 42 6 1594 429 113 0 0 chr5 132276654 132276716 -20260543 + B3 SINE B2 1 62 -154 6 1594 262 316 20 30 chr5 132276917 132277018 -20260241 - B1F SINE Alu -3 146 47 6 1594 229 204 139 93 chr5 132277346 132277497 -20259762 - B2_Mm2 SINE B2 -1 194 37 6 1594 811 192 203 0 chr5 132277542 132277719 -20259540 - B3 SINE B2 -1 215 3 6 1594 465 76 0 0 chr5 132278826 132278892 -20258367 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1594 424 259 143 7 chr5 132278913 132279053 -20258206 - RSINE1 SINE B4 -2 163 5 6 1594 233 275 174 0 chr5 132280441 132280510 -20256749 - ID4_ SINE ID -2 81 1 6 1594 509 175 48 19 chr5 132280487 132280592 -20256667 - ZP3AR Satellite Satellite -94 118 11 6 1594 700 242 130 31 chr5 132280803 132280995 -20256264 + MTD LTR MaLR 103 313 -106 6 1594 390 200 0 0 chr5 132281790 132281855 -20255404 + RSINE1 SINE B4 8 72 -93 6 1594 811 270 42 0 chr5 132282495 132282684 -20254575 - ID_B1 SINE B4 -16 208 12 6 1594 298 295 119 37 chr5 132283134 132283243 -20254016 - RSINE1 SINE B4 -4 161 44 6 1594 228 35 0 0 chr5 132283271 132283300 -20253959 + (CAA)n Simple_repeat Simple_repeat 2 30 0 7 1594 204 232 29 0 chr5 132283315 132283384 -20253875 + (CCAA)n Simple_repeat Simple_repeat 1 71 0 7 1594 183 355 65 53 chr5 132283821 132284068 -20253191 + L2 LINE L2 2552 2801 -618 7 1594 397 271 55 83 chr5 132284068 132284249 -20253010 + MER5A DNA MER1_type 7 182 -7 7 1594 688 249 120 49 chr5 132284546 132284812 -20252447 + B4 SINE B4 2 286 -6 7 1594 539 226 8 17 chr5 132284917 132285034 -20252225 - B1_Mur1 SINE Alu 0 149 34 7 1594 376 299 0 86 chr5 132285247 132285375 -20251884 + RSINE1 SINE B4 3 119 -46 7 1594 497 298 82 73 chr5 132285445 132285760 -20251499 - Tigger2b DNA MER2_type -69 657 340 7 1594 1083 274 15 26 chr5 132285797 132286070 -20251189 - B4 SINE B4 -1 291 22 7 1594 594 202 0 8 chr5 132286115 132286245 -20251014 - Lx4A LINE L1 0 7058 6930 7 1594 420 237 117 15 chr5 132286256 132286453 -20250806 - Tigger2b DNA MER2_type -408 318 102 7 1594 308 283 131 12 chr5 132286915 132287083 -20250176 + L1MD LINE L1 4974 5161 -985 7 1594 22 0 0 0 chr5 132287087 132287109 -20250150 + AT_rich Low_complexity Low_complexity 1 22 0 7 1594 390 270 71 84 chr5 132287126 132287280 -20249979 + B4 SINE B4 53 204 -88 7 1594 768 102 0 37 chr5 132287166 132287290 -20249969 + B1_Mus2 SINE Alu 6 124 -24 7 1594 558 79 0 0 chr5 132287302 132287378 -20249881 + (TA)n Simple_repeat Simple_repeat 2 77 0 7 1594 360 64 0 0 chr5 132287504 132287551 -20249708 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1594 801 285 88 11 chr5 132287555 132287818 -20249441 - B4A SINE B4 -6 286 4 7 1594 297 0 0 0 chr5 132288043 132288076 -20249183 + (TG)n Simple_repeat Simple_repeat 1 33 0 7 1594 579 253 51 29 chr5 132288783 132288958 -20248301 - B3A SINE B2 -19 179 1 7 1594 291 301 55 62 chr5 132289659 132289804 -20247455 - 7SLRNA srpRNA srpRNA -169 145 2 7 1594 807 250 17 6 chr5 132289709 132289882 -20247377 - ID_B1 SINE B4 -46 178 4 7 1594 601 281 45 90 chr5 132289882 132290102 -20247157 + B4 SINE B4 44 254 -38 7 1594 354 45 0 0 chr5 132290118 132290162 -20247097 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1594 187 322 62 32 chr5 132290691 132290902 -20246357 - L2a LINE L2 -2 3424 3156 7 1594 389 325 40 24 chr5 132290957 132291083 -20246176 + RSINE1 SINE B4 23 150 -15 7 1594 321 26 0 0 chr5 132291090 132291128 -20246131 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1594 491 243 84 218 chr5 132291174 132291495 -20245764 - B4 SINE B4 -14 278 1 7 1594 227 320 151 28 chr5 132291744 132291850 -20245409 + PB1 SINE Alu 6 124 -3 7 1594 261 0 0 0 chr5 132291961 132291990 -20245269 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1594 256 328 0 0 chr5 132292003 132292067 -20245192 - ID4_ SINE ID -17 66 3 7 1594 891 251 29 25 chr5 132292069 132292331 -20244928 - ZP3AR Satellite Satellite -11 263 1 7 1594 459 257 83 0 chr5 132293686 132293830 -20243429 + RSINE1 SINE B4 4 159 -6 7 1594 313 250 36 99 chr5 132294246 132294357 -20242902 + RMER15 LTR ERVL 359 462 -113 7 1594 2304 71 45 10 chr5 132294590 132294902 -20242357 + ORR1A2 LTR MaLR 5 327 0 7 1594 557 248 107 136 chr5 132296067 132296244 -20241015 + B3A SINE B2 2 182 -16 7 1594 390 66 51 26 chr5 132296249 132296327 -20240932 + (CAGAGA)n Simple_repeat Simple_repeat 5 84 0 7 1594 349 268 0 0 chr5 132296493 132296575 -20240684 + L1MB7 LINE L1 6093 6174 -10 7 1594 437 236 95 31 chr5 132296961 132297110 -20240149 + B4A SINE B4 3 157 -67 7 1594 270 281 91 123 chr5 132297241 132297395 -20239864 + B4A SINE B4 144 292 0 7 1594 258 245 0 0 chr5 132297717 132297766 -20239493 - ID4 SINE ID -24 59 11 7 1594 852 236 6 90 chr5 132297733 132298041 -20239218 - ZP3AR Satellite Satellite -74 282 1 7 1594 342 315 90 0 chr5 132298041 132298152 -20239107 - PB1 SINE Alu -2 125 5 7 1594 482 335 0 13 chr5 132298152 132298176 -20239083 - ZP3AR Satellite Satellite -126 86 65 7 1594 484 264 216 82 chr5 132298617 132298885 -20238374 + MTE2a LTR MaLR 52 355 -24 7 1594 1001 246 114 57 chr5 132299184 132299516 -20237743 - MTEa LTR MaLR -5 374 24 7 1594 845 196 0 0 chr5 132299520 132299658 -20237601 + B1_Mur3 SINE Alu 1 138 -11 7 1594 381 22 0 0 chr5 132299658 132299704 -20237555 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1594 664 249 88 26 chr5 132299793 132299817 -20237442 - B3 SINE B2 -10 206 183 7 1594 306 0 0 0 chr5 132299817 132299851 -20237408 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 7 1594 664 249 88 26 chr5 132299851 132300020 -20237239 - B3 SINE B2 -34 182 1 7 1594 247 267 3 36 chr5 132300816 132301086 -20236173 + CT-rich Low_complexity Low_complexity 1 261 0 7 1594 351 113 0 0 chr5 132301683 132301736 -20235523 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1594 506 288 83 66 chr5 132301753 132301889 -20235370 - B4 SINE B4 -20 272 125 7 1594 242 0 61 0 chr5 132301889 132301922 -20235337 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1594 1166 56 0 0 chr5 132301924 132302066 -20235193 - B1_Mus1 SINE Alu -6 142 1 7 1594 506 288 83 66 chr5 132302066 132302168 -20235091 - B4 SINE B4 -168 124 27 7 1594 217 236 18 0 chr5 132302615 132302670 -20234589 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1594 634 273 114 31 chr5 132302678 132302871 -20234388 - B4 SINE B4 0 292 84 7 1594 414 242 20 20 chr5 132302918 132303019 -20234240 - RSINE1 SINE B4 -62 103 3 7 1594 331 253 22 44 chr5 132303022 132303113 -20234146 - B4 SINE B4 -201 91 3 7 1594 213 161 0 88 chr5 132303147 132303215 -20234044 + T-rich Low_complexity Low_complexity 2 63 0 7 1594 969 256 19 0 chr5 132303434 132303645 -20233614 - ID_B1 SINE B4 -8 216 2 7 1594 204 263 46 46 chr5 132303860 132304035 -20233224 + (CCTA)n Simple_repeat Simple_repeat 1 175 0 7 1594 1322 239 108 46 chr5 132304324 132304741 -20232518 + RMER5 LTR ERV1 92 534 0 7 1594 182 376 81 81 chr5 132305928 132306200 -20231059 - L3 LINE CR1 -53 4436 4165 7 1594 344 308 163 16 chr5 132306436 132306687 -20230572 + B4A SINE B4 1 288 -4 7 1594 369 93 0 0 chr5 132306885 132306939 -20230320 + (TG)n Simple_repeat Simple_repeat 2 55 0 7 1594 378 304 71 0 chr5 132306958 132307070 -20230189 - RSINE1 SINE B4 -45 120 1 7 1594 357 226 150 86 chr5 132307233 132307373 -20229886 - B1_Mur4 SINE Alu 0 150 2 7 1594 276 170 13 44 chr5 132307617 132307695 -20229564 + ID4 SINE ID 2 74 -78 7 1594 338 320 31 15 chr5 132307803 132307933 -20229326 + L1MB3 LINE L1 5688 5819 -364 7 1594 1111 271 113 27 chr5 132307940 132308312 -20228947 + MTD LTR MaLR 4 407 -12 7 1594 265 341 67 35 chr5 132308320 132308575 -20228684 + L1MB3 LINE L1 5814 6076 -107 7 1594 405 333 121 21 chr5 132309417 132309607 -20227652 + MER58C DNA MER1_type 7 215 0 7 1594 580 355 4 36 chr5 132309688 132309939 -20227320 + B4 SINE B4 2 244 -48 7 1594 474 319 111 24 chr5 132309939 132310228 -20227031 + Lx8 LINE L1 7017 7330 -143 7 1594 1913 148 13 12 chr5 132310300 132310703 -20226556 - ORR1A2 LTR MaLR 0 346 1 7 1594 813 216 0 0 chr5 132311338 132311477 -20225782 + B1_Mus2 SINE Alu 2 140 -7 7 1594 496 262 98 109 chr5 132311627 132311820 -20225439 - B3A SINE B2 -7 191 1 7 1594 201 244 0 0 chr5 132311947 132311988 -20225271 + CT-rich Low_complexity Low_complexity 4 44 0 7 1594 389 20 20 0 chr5 132312482 132312532 -20224727 + (GGGA)n Simple_repeat Simple_repeat 1 51 0 7 1594 827 256 74 5 chr5 132312568 132312784 -20224475 + B4A SINE B4 46 276 -16 7 1594 387 0 0 0 chr5 132312815 132312858 -20224401 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1594 387 0 0 0 chr5 132312858 132312900 -20224359 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1594 2148 27 0 26 chr5 132313213 132313477 -20223782 + L1Md_F2 LINE L1 6324 6580 -2 7 1594 21 0 0 0 chr5 132313514 132313535 -20223724 + AT_rich Low_complexity Low_complexity 1 21 0 7 1594 794 260 17 11 chr5 132313608 132313815 -20223444 - B3A SINE B2 -6 210 2 7 1594 777 226 0 0 chr5 132313807 132313944 -20223315 - B1_Mus2 SINE Alu 0 147 11 7 1594 650 247 64 53 chr5 132314635 132314823 -20222436 - B3A SINE B2 -8 190 1 7 1594 23 0 0 0 chr5 132315408 132315431 -20221828 + AT_rich Low_complexity Low_complexity 1 23 0 7 1594 299 266 0 141 chr5 132316496 132316588 -20220671 - ID4 SINE ID -3 80 2 7 1594 1417 263 50 3 chr5 132316610 132316972 -20220287 + MTEb LTR MaLR 1 379 0 7 1594 586 240 123 29 chr5 132317777 132318036 -20219223 + MTD LTR MaLR 89 405 -14 7 1594 222 355 98 49 chr5 132318246 132318409 -20218850 - MER5B DNA MER1_type 0 178 8 7 1594 537 312 32 59 chr5 132318656 132318843 -20218416 + B3A SINE B2 3 184 -14 7 1594 263 288 114 0 chr5 132318843 132318975 -20218284 + L1M5 LINE L1 5427 5573 -606 7 1594 1307 158 4 0 chr5 132319334 132319587 -20217672 + ZP3AR Satellite Satellite 1 254 0 7 1594 1207 48 7 0 chr5 132320662 132320808 -20216451 - B1_Mus1 SINE Alu 0 148 2 7 1594 227 277 49 30 chr5 132321393 132321557 -20215702 + (TATATG)n Simple_repeat Simple_repeat 3 169 0 7 1594 618 283 138 23 chr5 132321579 132321839 -20215420 - B4A SINE B4 -2 290 1 7 1594 226 367 66 7 chr5 132321852 132322003 -20215256 - MIRb SINE MIR -71 197 38 7 1594 269 312 18 9 chr5 132322405 132322518 -20214741 + CT-rich Low_complexity Low_complexity 1 114 0 7 1594 569 236 160 50 chr5 132322951 132323170 -20214089 - MTD LTR MaLR -12 407 165 7 1594 728 229 128 0 chr5 132323358 132323513 -20213746 + B3 SINE B2 1 179 -37 7 1594 420 20 0 0 chr5 132323513 132323562 -20213697 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1594 728 229 128 0 chr5 132323562 132323594 -20213665 + B3 SINE B2 180 211 -5 7 1594 237 65 0 0 chr5 132323655 132323686 -20213573 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 7 1594 267 79 0 0 chr5 132323824 132323862 -20213397 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 8 1594 211 136 0 22 chr5 132324322 132324367 -20212892 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1594 647 314 141 25 chr5 132324453 132324695 -20212564 + B4A SINE B4 1 270 -22 8 1594 522 46 0 0 chr5 132324762 132324827 -20212432 + (CCA)n Simple_repeat Simple_repeat 1 65 0 8 1594 522 366 60 8 chr5 132325116 132325364 -20211895 - B4A SINE B4 -29 263 3 8 1594 1187 66 12 29 chr5 132326246 132326417 -20210842 + B2_Mm1t SINE B2 26 193 0 8 1594 254 314 48 29 chr5 132326560 132326665 -20210594 - B4A SINE B4 -145 147 41 8 1594 644 290 60 43 chr5 132328552 132328833 -20208426 - B4 SINE B4 -6 286 1 8 1594 260 330 120 0 chr5 132328953 132329053 -20208206 + ID_B1 SINE B4 90 201 -23 8 1594 1515 58 0 0 chr5 132329159 132329482 -20207777 + ZP3AR Satellite Satellite 1 323 -1 8 1594 1061 67 7 0 chr5 132329887 132330022 -20207237 + B1_Mm SINE Alu 2 137 -10 8 1594 342 0 0 0 chr5 132330022 132330060 -20207199 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 8 1594 476 276 83 47 chr5 132330086 132330363 -20206896 + B4 SINE B4 4 290 -2 8 1594 270 221 24 83 chr5 132330393 132330477 -20206782 + B4A SINE B4 214 292 0 8 1594 216 0 0 0 chr5 132330489 132330513 -20206746 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1594 877 64 8 39 chr5 132330513 132330642 -20206617 - B1_Mus1 SINE Alu -10 138 7 8 1594 450 252 32 95 chr5 132330642 132330661 -20206598 - ID_B1 SINE B4 -10 214 73 8 1594 317 268 0 27 chr5 132331771 132331844 -20205415 - L1MEg LINE L1 -4141 1943 1873 8 1594 351 313 0 12 chr5 132331880 132331964 -20205295 + RSINE1 SINE B4 3 85 -80 8 1594 419 311 52 19 chr5 132331961 132332115 -20205144 - B3A SINE B2 -37 161 3 8 1594 378 291 9 19 chr5 132332179 132332284 -20204975 - ID_B1 SINE B4 -109 115 12 8 1594 665 265 28 6 chr5 132333102 132333284 -20203975 + MTE2b LTR MaLR 3 188 -191 8 1594 372 264 146 23 chr5 132333651 132333822 -20203437 + MTE2b LTR MaLR 174 365 -14 8 1594 309 355 0 8 chr5 132334410 132334532 -20202727 + GA-rich Low_complexity Low_complexity 2 122 0 8 1594 616 259 129 20 chr5 132334632 132334833 -20202426 + ID_B1 SINE B4 2 224 0 8 1594 259 220 0 20 chr5 132334861 132334912 -20202347 + B1F1 SINE Alu 94 143 -6 8 1594 231 344 30 172 chr5 132335840 132336072 -20201187 - Tigger7 DNA MER2_type -2199 292 94 8 1594 803 179 21 0 chr5 132336090 132336235 -20201024 - B1_Mus1 SINE Alu 0 148 1 8 1594 22 70 0 0 chr5 132336246 132336289 -20200970 + AT_rich Low_complexity Low_complexity 1 43 0 8 1594 685 273 120 0 chr5 132336511 132336753 -20200506 + B4 SINE B4 5 275 -17 8 1594 509 300 50 6 chr5 132337983 132338144 -20199115 - MER96 DNA hAT -3 172 5 8 1594 461 68 14 0 chr5 132338265 132338339 -20198920 + (TC)n Simple_repeat Simple_repeat 2 76 0 8 1594 665 351 48 4 chr5 132339273 132339545 -20197714 - B4A SINE B4 0 292 9 8 1594 297 250 108 36 chr5 132339732 132339898 -20197361 - MER3 DNA MER1_type -6 203 26 8 1594 233 333 11 0 chr5 132340523 132340610 -20196649 + (CATA)n Simple_repeat Simple_repeat 2 89 0 8 1594 227 179 36 0 chr5 132342048 132342104 -20195155 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 8 1594 404 330 79 36 chr5 132342195 132342475 -20194784 - B4A SINE B4 0 292 1 8 1594 533 293 44 39 chr5 132342752 132342958 -20194301 + ID_B1 SINE B4 8 214 -10 8 1594 191 36 0 35 chr5 132342981 132343010 -20194249 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 1594 690 286 8 46 chr5 132344255 132344493 -20192766 - B4 SINE B4 0 292 64 8 1594 1081 68 0 39 chr5 132345041 132345054 -20192205 - B1_Mus1 SINE Alu 0 148 140 8 1594 180 0 0 0 chr5 132345054 132345074 -20192185 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 8 1594 1081 68 0 39 chr5 132345074 132345213 -20192046 - B1_Mus1 SINE Alu -9 139 2 8 1594 296 189 0 0 chr5 132346276 132346329 -20190930 + tRNA-Ala-GCY_ tRNA tRNA 2 54 -21 8 1594 207 125 0 0 chr5 132346506 132346546 -20190713 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1594 618 234 143 26 chr5 132347488 132347677 -20189582 + B4A SINE B4 1 211 -81 8 1594 230 136 0 22 chr5 132347943 132347988 -20189271 + GA-rich Low_complexity Low_complexity 5 48 0 8 1594 615 304 38 0 chr5 132348388 132348572 -20188687 - ID_B1 SINE B4 -33 191 1 8 1594 722 290 16 0 chr5 132349433 132349626 -20187633 + ID_B1 SINE B4 8 203 -21 8 1594 442 351 27 5 chr5 132349692 132349878 -20187381 + B3A SINE B2 9 198 0 8 1594 365 346 29 74 chr5 132350323 132350498 -20186761 + B4A SINE B4 2 168 -124 8 1594 485 283 0 8 chr5 132351250 132351378 -20185881 + ID_B1 SINE B4 98 224 0 8 1594 980 264 71 76 chr5 132352395 132352776 -20184483 - MTD LTR MaLR -31 388 10 8 1594 540 336 26 113 chr5 132353270 132353651 -20183608 + MTE2a LTR MaLR 17 376 -43 8 1594 273 57 0 0 chr5 132353952 132353987 -20183272 + (TC)n Simple_repeat Simple_repeat 1 35 0 8 1594 387 0 0 0 chr5 132353998 132354041 -20183218 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1594 597 272 81 64 chr5 132355638 132355954 -20181305 - MTD LTR MaLR 0 379 24 8 1594 22 0 0 0 chr5 132355990 132356012 -20181247 + AT_rich Low_complexity Low_complexity 1 22 0 8 1594 772 238 82 63 chr5 132356304 132356573 -20180686 + B4 SINE B4 1 274 -18 8 1594 1077 245 45 15 chr5 132357169 132357438 -20179821 + B4A SINE B4 7 283 -9 8 1594 569 165 0 6 chr5 132357460 132357625 -20179634 + (CA)n Simple_repeat Simple_repeat 2 165 0 8 1594 489 80 0 0 chr5 132357641 132357716 -20179543 + (CA)n Simple_repeat Simple_repeat 1 75 0 8 1594 236 30 0 29 chr5 132358788 132358822 -20178437 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8 1594 651 250 44 0 chr5 132358839 132358999 -20178260 - B3A SINE B2 -30 168 2 8 1594 935 265 59 125 chr5 132359245 132359693 -20177566 + MTD LTR MaLR 1 404 -15 8 1594 794 235 91 75 chr5 132360275 132360583 -20176676 + MTE2b LTR MaLR 67 379 0 8 1594 452 291 37 15 chr5 132361016 132361152 -20176107 + RSINE1 SINE B4 3 141 -24 8 1594 192 77 0 0 chr5 132361152 132361178 -20176081 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1594 821 284 27 5 chr5 132361578 132361797 -20175462 + B4A SINE B4 1 224 -68 8 1594 180 111 0 0 chr5 132361797 132361824 -20175435 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1594 5717 180 163 8 chr5 132361829 132363132 -20174127 + ORR1B1-int LTR MaLR 5 1509 0 8 1594 1976 155 112 8 chr5 132363132 132363489 -20173770 + ORR1B1 LTR MaLR 1 394 0 8 1594 494 324 5 63 chr5 132363491 132363682 -20173577 + B3A SINE B2 1 180 -18 8 1594 229 261 43 14 chr5 132363727 132363797 -20173462 + B4A SINE B4 217 288 -4 8 1594 24 0 0 0 chr5 132364257 132364281 -20172978 + AT_rich Low_complexity Low_complexity 1 24 0 8 1594 349 269 19 28 chr5 132364627 132364734 -20172525 - MTD LTR MaLR -27 392 287 8 1594 288 263 254 0 chr5 132364754 132364868 -20172391 - MTD LTR MaLR -230 189 47 8 1594 324 323 128 64 chr5 132364989 132365161 -20172098 - B4 SINE B4 -109 183 1 8 1594 484 314 97 23 chr5 132365854 132366030 -20171229 - ID_B1 SINE B4 -35 189 1 8 1594 297 0 0 0 chr5 132366076 132366109 -20171150 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 8 1594 456 123 0 0 chr5 132366233 132366306 -20170953 + (GGGA)n Simple_repeat Simple_repeat 3 75 0 8 1594 222 37 0 0 chr5 132366564 132366591 -20170668 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1594 398 319 33 66 chr5 132366600 132366751 -20170508 - RSINE1 SINE B4 -18 147 2 8 1594 230 261 128 51 chr5 132367284 132367401 -20169858 + Lx8 LINE L1 7342 7467 -6 8 1594 1091 164 53 61 chr5 132368210 132368254 -20169005 + URR1A DNA MER1_type 1 40 -186 8 1594 201 39 0 0 chr5 132368254 132368280 -20168979 + (GGGTG)n Simple_repeat Simple_repeat 3 28 0 8 1594 1091 164 53 61 chr5 132368280 132368463 -20168796 + URR1A DNA MER1_type 41 225 -1 8 1594 232 315 92 9 chr5 132368574 132368586 -20168673 - B1F SINE Alu 0 149 32 8 1594 396 179 62 21 chr5 132368586 132368683 -20168576 - ID_B1 SINE B4 -11 213 113 8 1594 385 318 67 92 chr5 132369289 132369573 -20167686 + B4 SINE B4 8 284 -8 8 1594 497 270 76 54 chr5 132370163 132370347 -20166912 - ID_B1 SINE B4 0 224 37 8 1594 216 0 0 0 chr5 132370414 132370438 -20166821 + (CA)n Simple_repeat Simple_repeat 1 24 0 8 1594 611 286 0 42 chr5 132370442 132370632 -20166627 - B3A SINE B2 -16 182 1 8 1594 1184 62 0 0 chr5 132371272 132371417 -20165842 + B1_Mus1 SINE Alu 2 146 -2 8 1594 719 236 101 6 chr5 132371645 132371824 -20165435 + MTE2a LTR MaLR 92 287 -92 8 1594 216 0 0 0 chr5 132372551 132372575 -20164684 + (TG)n Simple_repeat Simple_repeat 1 24 0 8 1594 263 316 20 40 chr5 132374264 132374363 -20162896 - B4A SINE B4 -194 98 2 8 1594 312 305 0 0 chr5 132374479 132374561 -20162698 + ID SINE ID 2 83 -141 8 1594 492 326 21 21 chr5 132374573 132374761 -20162498 + B3 SINE B2 2 189 -27 8 1594 422 194 40 10 chr5 132374813 132374912 -20162347 + ID_B1 SINE B4 107 208 -16 8 1594 195 204 0 0 chr5 132374926 132374970 -20162289 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 8 1594 1004 151 0 6 chr5 132375010 132375190 -20162069 + GA-rich Low_complexity Low_complexity 2 180 0 8 1594 25 0 0 0 chr5 132376235 132376260 -20160999 + AT_rich Low_complexity Low_complexity 1 25 0 8 1594 195 100 0 0 chr5 132376278 132376308 -20160951 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1594 349 140 0 0 chr5 132376316 132376373 -20160886 - RSINE1 SINE B4 -40 125 69 8 1594 542 128 11 0 chr5 132377352 132377446 -20159813 + (TC)n Simple_repeat Simple_repeat 2 96 0 8 1594 535 211 43 50 chr5 132377499 132377639 -20159620 + B4 SINE B4 148 286 -6 8 1594 261 57 0 0 chr5 132378086 132378121 -20159138 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 1594 554 315 45 6 chr5 132378125 132378304 -20158955 - B4A SINE B4 -4 288 103 9 1594 236 130 22 0 chr5 132378325 132378371 -20158888 + CT-rich Low_complexity Low_complexity 2 48 0 9 1594 272 240 13 51 chr5 132378373 132378452 -20158807 - B4 SINE B4 -212 80 5 9 1594 191 88 0 29 chr5 132379739 132379774 -20157485 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 9 1594 585 210 8 31 chr5 132379857 132379985 -20157274 - B1_Mur1 SINE Alu -20 129 5 9 1594 512 201 172 0 chr5 132379987 132380121 -20157138 - ID_B1 SINE B4 -67 157 1 9 1594 219 333 14 47 chr5 132380536 132380684 -20156575 + CT-rich Low_complexity Low_complexity 3 145 0 9 1594 421 297 26 48 chr5 132380812 132381000 -20156259 - B4 SINE B4 -6 286 17 9 1594 482 320 56 51 chr5 132381941 132382155 -20155104 - ID_B1 SINE B4 -9 215 1 9 1595 1391 208 91 20 chr5 132383245 132383598 -20153661 + MTD LTR MaLR 40 417 -2 9 1595 217 355 9 9 chr5 132383612 132383720 -20153539 + GA-rich Low_complexity Low_complexity 2 109 0 9 1595 327 238 0 40 chr5 132383720 132383794 -20153465 + polypurine Low_complexity Low_complexity 1 71 0 9 1595 1472 214 132 5 chr5 132383794 132384166 -20153093 - MTD LTR MaLR 0 419 1 9 1595 327 238 0 40 chr5 132384166 132384266 -20152993 + GA-rich Low_complexity Low_complexity 72 167 0 9 1595 579 272 96 15 chr5 132384382 132384580 -20152679 - B3 SINE B2 0 216 3 9 1595 1073 109 48 21 chr5 132384585 132384773 -20152486 - B2_Mm2 SINE B2 0 195 3 9 1595 272 182 0 0 chr5 132385508 132385552 -20151707 + B1F1 SINE Alu 12 55 -94 9 1595 254 263 126 66 chr5 132385602 132385785 -20151474 - B3A SINE B2 0 198 5 9 1595 482 159 11 0 chr5 132386002 132386090 -20151169 + RSINE1 SINE B4 3 91 -74 9 1595 538 287 12 42 chr5 132386187 132386354 -20150905 - RSINE1 SINE B4 0 165 4 9 1595 572 237 200 4 chr5 132387007 132387232 -20150027 - B4A SINE B4 -23 269 1 9 1595 610 264 16 36 chr5 132387399 132387592 -20149667 + RLTR14 LTR ERV1 1 189 -193 9 1595 361 285 0 58 chr5 132387741 132387879 -20149380 + MLT1A0 LTR MaLR 34 163 -202 9 1595 270 361 16 0 chr5 132387905 132388027 -20149232 + MLT1A0 LTR MaLR 232 355 -10 9 1595 949 126 11 0 chr5 132388258 132388433 -20148826 + (CA)n Simple_repeat Simple_repeat 2 178 0 9 1595 202 229 0 0 chr5 132388454 132388502 -20148757 + A-rich Low_complexity Low_complexity 1 48 0 9 1595 359 222 0 72 chr5 132388782 132388879 -20148380 + B4 SINE B4 11 100 -192 9 1595 357 305 0 21 chr5 132388994 132389091 -20148168 + B4 SINE B4 111 205 -87 9 1595 378 0 0 0 chr5 132389166 132389208 -20148051 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1595 484 245 0 35 chr5 132389942 132390056 -20147203 + ID_B1 SINE B4 86 195 -29 9 1595 664 257 14 0 chr5 132390056 132390200 -20147059 + RSINE1 SINE B4 4 149 -16 9 1595 631 320 0 0 chr5 132390261 132390417 -20146842 + B3A SINE B2 1 156 -42 9 1595 473 47 16 0 chr5 132390418 132390482 -20146777 + (CA)n Simple_repeat Simple_repeat 2 66 0 9 1595 244 211 18 0 chr5 132390946 132391003 -20146256 + (TG)n Simple_repeat Simple_repeat 1 58 0 9 1595 228 261 7 22 chr5 132391014 132391151 -20146108 + (TATATG)n Simple_repeat Simple_repeat 6 140 0 9 1595 388 235 43 17 chr5 132391160 132391277 -20145982 - L1MB3 LINE L1 -10 6173 6054 9 1595 640 254 91 114 chr5 132391660 132391958 -20145301 + B4 SINE B4 2 292 0 9 1595 577 138 67 82 chr5 132392150 132392284 -20144975 + B1_Mur3 SINE Alu 18 149 0 9 1595 351 65 0 0 chr5 132392527 132392573 -20144686 + (TTA)n Simple_repeat Simple_repeat 2 47 0 9 1595 279 157 0 0 chr5 132393555 132393606 -20143653 + CT-rich Low_complexity Low_complexity 1 51 0 9 1595 297 0 0 0 chr5 132394878 132394911 -20142348 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1595 588 147 0 0 chr5 132394911 132395047 -20142212 + (GA)n Simple_repeat Simple_repeat 1 136 0 9 1595 306 319 35 9 chr5 132395383 132395497 -20141762 + ZP3AR Satellite Satellite 46 162 -50 9 1595 243 181 0 0 chr5 132395743 132395815 -20141444 + A-rich Low_complexity Low_complexity 1 72 0 9 1595 351 0 0 0 chr5 132396669 132396708 -20140551 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1595 487 252 136 68 chr5 132396710 132396931 -20140328 - B4A SINE B4 -53 239 4 9 1595 265 206 73 0 chr5 132397380 132397448 -20139811 + B1_Mur2 SINE Alu 68 140 -9 9 1595 310 281 0 33 chr5 132397523 132397615 -20139644 + GA-rich Low_complexity Low_complexity 6 94 0 9 1595 1303 191 238 26 chr5 132398038 132398382 -20138877 - MTC LTR MaLR -4 417 1 9 1595 444 111 0 0 chr5 132398416 132398497 -20138762 + (CATA)n Simple_repeat Simple_repeat 1 81 0 9 1595 696 297 84 25 chr5 132398822 132399198 -20138061 - ZP3AR Satellite Satellite -77 397 1 9 1595 240 186 0 214 chr5 132399279 132399368 -20137891 - B1F SINE Alu -33 116 28 9 1595 333 0 0 0 chr5 132399510 132399547 -20137712 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1595 504 0 0 0 chr5 132399547 132399602 -20137657 + (GA)n Simple_repeat Simple_repeat 2 57 0 9 1595 24 32 0 0 chr5 132400586 132400617 -20136642 + AT_rich Low_complexity Low_complexity 1 31 0 9 1595 201 94 0 0 chr5 132401583 132401615 -20135644 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1595 602 299 23 118 chr5 132402668 132402930 -20134329 + B4A SINE B4 3 239 -53 9 1595 369 279 93 54 chr5 132402920 132403049 -20134210 + RSINE1 SINE B4 29 162 -3 9 1595 332 317 99 72 chr5 132403551 132403772 -20133487 + B4A SINE B4 2 228 -64 9 1595 207 231 62 0 chr5 132403809 132403874 -20133385 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 9 1595 334 229 8 155 chr5 132404017 132404146 -20133113 - ID_B1 SINE B4 -10 214 105 9 1595 319 285 71 21 chr5 132405096 132405236 -20132023 + B4A SINE B4 82 228 -64 9 1595 510 288 24 53 chr5 132405236 132405405 -20131854 + RSINE1 SINE B4 2 165 0 9 1595 441 0 0 0 chr5 132405405 132405454 -20131805 + (TC)n Simple_repeat Simple_repeat 1 49 0 9 1595 216 0 0 0 chr5 132405454 132405477 -20131782 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1595 189 0 0 0 chr5 132406456 132406477 -20130782 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1595 459 249 172 70 chr5 132406660 132406846 -20130413 + B4 SINE B4 39 243 -49 9 1595 682 342 26 15 chr5 132406838 132407105 -20130154 + B4A SINE B4 5 274 -18 9 1595 306 73 0 0 chr5 132407222 132407263 -20129996 + (CATA)n Simple_repeat Simple_repeat 2 42 0 9 1595 282 254 0 33 chr5 132407279 132407340 -20129919 + B4 SINE B4 216 274 -18 9 1595 462 36 0 0 chr5 132407344 132407400 -20129859 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1595 846 308 81 25 chr5 132407742 132408138 -20129121 - MTD LTR MaLR 0 419 2 9 1595 273 326 19 87 chr5 132408521 132408682 -20128577 + B4 SINE B4 2 151 -141 9 1595 286 242 0 0 chr5 132409237 132409299 -20127960 - Charlie22a DNA MER1_type 0 491 430 9 1595 675 190 0 0 chr5 132409762 132409899 -20127360 + (TA)n Simple_repeat Simple_repeat 1 137 0 9 1595 676 158 63 0 chr5 132410292 132410419 -20126840 + B1F2 SINE Alu 1 135 -14 9 1595 3213 52 32 0 chr5 132410419 132410823 -20126436 + BGLII LTR ERVK 5 421 0 9 1595 346 318 33 34 chr5 132411153 132411373 -20125886 + L1MC4 LINE L1 6812 7068 -974 9 1595 298 260 67 0 chr5 132411490 132411594 -20125665 + ID_B1 SINE B4 113 223 -1 9 1595 527 271 118 29 chr5 132411951 132412553 -20124706 + L1M2 LINE L1 4812 5488 -668 9 1595 237 247 255 11 chr5 132412827 132412921 -20124338 + MTEa LTR MaLR 1 117 -262 9 1595 267 161 0 0 chr5 132413437 132413493 -20123766 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1595 294 304 36 0 chr5 132413547 132413685 -20123574 + L1M4 LINE L1 3707 3849 -2297 9 1595 600 308 38 0 chr5 132413962 132414147 -20123112 + B3A SINE B2 1 192 -6 9 1595 279 348 79 7 chr5 132414269 132414602 -20122657 - L1MB3 LINE L1 -103 6071 5706 9 1595 229 326 104 15 chr5 132414694 132414828 -20122431 + B4 SINE B4 6 151 -141 9 1595 487 295 45 0 chr5 132414910 132415066 -20122193 - RSINE1 SINE B4 0 165 3 9 1595 492 18 0 0 chr5 132415174 132415231 -20122028 + (CA)n Simple_repeat Simple_repeat 2 58 0 9 1595 400 267 351 5 chr5 132416214 132416425 -20120834 - B4A SINE B4 -4 288 5 9 1595 831 257 196 8 chr5 132416632 132416989 -20120270 + MTD LTR MaLR 1 398 -21 9 1595 382 316 21 36 chr5 132416989 132417183 -20120076 + B4 SINE B4 37 227 -65 9 1595 909 245 133 28 chr5 132417727 132418050 -20119209 + Lx8 LINE L1 6806 7162 -311 9 1595 420 252 47 61 chr5 132418992 132419140 -20118119 + B1F SINE Alu 4 149 0 9 1595 312 299 31 0 chr5 132419344 132419441 -20117818 + PB1D7 SINE Alu 19 118 -2 9 1595 370 269 31 85 chr5 132419472 132419602 -20117657 + RSINE1 SINE B4 33 155 -10 9 1595 565 243 7 22 chr5 132419885 132420024 -20117235 + B1_Mur2 SINE Alu 6 142 -7 9 1595 287 253 26 13 chr5 132421490 132421566 -20115693 - ID4 SINE ID -1 82 6 9 1595 426 242 0 10 chr5 132421540 132421636 -20115623 - ZP3AR Satellite Satellite -87 125 31 9 1595 455 300 8 8 chr5 132421745 132421876 -20115383 - ZP3AR Satellite Satellite -42 170 40 9 1595 1683 31 0 0 chr5 132421898 132422091 -20115168 + B2_Mm1a SINE B2 1 193 0 9 1595 248 234 0 4 chr5 132422180 132422240 -20115019 + PB1D10 SINE Alu 55 113 -7 9 1595 227 220 0 57 chr5 132422194 132422247 -20115012 + ID_B1 SINE B4 175 224 0 9 1595 219 307 142 113 chr5 132422266 132422505 -20114754 + B4A SINE B4 28 273 -19 9 1595 219 300 50 91 chr5 132423305 132423334 -20113925 + PB1D7 SINE Alu 5 120 0 1 1595 329 233 33 22 chr5 132423334 132423426 -20113833 + ID_B1 SINE B4 132 224 0 1 1595 381 342 45 32 chr5 132423430 132423587 -20113672 + RSINE1 SINE B4 5 163 -2 1 1595 696 242 24 36 chr5 132424033 132424051 -20113208 - B3A SINE B2 -33 165 150 1 1595 342 0 0 0 chr5 132424051 132424089 -20113170 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1595 696 242 24 36 chr5 132424089 132424237 -20113022 - B3A SINE B2 -49 149 1 1 1595 928 258 49 35 chr5 132425987 132426352 -20110907 - MTD LTR MaLR -23 396 35 1 1595 198 0 0 0 chr5 132426485 132426507 -20110752 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1595 517 216 106 18 chr5 132426632 132426745 -20110514 - B3A SINE B2 -72 126 4 1 1595 231 36 0 0 chr5 132426885 132426913 -20110346 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1 1595 395 333 8 0 chr5 132427148 132427277 -20109982 - RSINE1 SINE B4 -33 132 3 1 1595 1141 52 0 0 chr5 132427654 132427788 -20109471 + B1_Mus2 SINE Alu 1 134 -13 1 1595 249 33 0 0 chr5 132427793 132427823 -20109436 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1595 183 42 0 0 chr5 132427823 132427847 -20109412 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1595 341 302 174 8 chr5 132428026 132428273 -20108986 + B4A SINE B4 3 290 -2 1 1595 2100 89 79 0 chr5 132428615 132428918 -20108341 + ORR1A2 LTR MaLR 1 327 0 1 1595 1293 144 66 35 chr5 132429683 132429941 -20107318 + MTC LTR MaLR 1 266 -155 1 1595 2242 230 9 25 chr5 132429937 132430494 -20106765 + MTC-int LTR MaLR 711 1258 0 1 1595 2105 188 50 0 chr5 132430494 132430893 -20106366 + MTC LTR MaLR 1 419 -2 1 1595 183 80 0 0 chr5 132431911 132431936 -20105323 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1595 470 294 48 28 chr5 132432056 132432308 -20104951 + RMER5 LTR ERV1 3 259 -275 1 1595 414 283 72 77 chr5 132432384 132432579 -20104680 - B3A SINE B2 -4 194 1 1 1595 307 253 21 21 chr5 132432607 132432700 -20104559 + RMER5 LTR ERV1 393 485 -49 1 1595 330 276 38 9 chr5 132433511 132433617 -20103642 - B3A SINE B2 -16 182 74 1 1595 525 226 0 25 chr5 132433610 132433728 -20103531 + RMER5 LTR ERV1 410 524 -10 1 1595 240 233 0 0 chr5 132434081 132434124 -20103135 + ORR1E LTR MaLR 56 98 -261 1 1595 227 253 67 0 chr5 132434125 132434200 -20103059 + ORR1E LTR MaLR 218 297 -62 1 1595 202 125 0 70 chr5 132434201 132434244 -20103015 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1 1595 457 323 39 0 chr5 132436051 132436178 -20101081 + RSINE1 SINE B4 3 134 -31 1 1595 447 19 0 0 chr5 132436188 132436240 -20101019 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1595 2359 179 7 12 chr5 132437006 132437429 -20099830 + MTC LTR MaLR 1 421 0 1 1595 475 282 170 44 chr5 132437610 132437881 -20099378 - MTD LTR MaLR -80 339 35 1 1595 600 251 104 10 chr5 132438528 132438729 -20098530 + ID_B1 SINE B4 1 220 -4 1 1595 519 17 0 0 chr5 132438761 132438821 -20098438 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1595 432 292 84 52 chr5 132438914 132439127 -20098132 + ID_B1 SINE B4 4 223 -1 1 1595 649 250 13 61 chr5 132440053 132440273 -20096986 - B4 SINE B4 -12 280 72 1 1595 698 278 11 11 chr5 132440277 132440459 -20096800 - B3A SINE B2 -15 183 2 1 1595 192 40 0 0 chr5 132440513 132440538 -20096721 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 1595 439 289 8 40 chr5 132440915 132441041 -20096218 + RSINE1 SINE B4 3 124 -41 1 1595 546 16 0 0 chr5 132441091 132441154 -20096105 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1 1595 207 0 0 0 chr5 132441961 132441984 -20095275 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1595 268 82 61 0 chr5 132442071 132442120 -20095139 + B1F SINE Alu 97 148 -1 1 1595 297 0 0 0 chr5 132442142 132442175 -20095084 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1595 1033 184 256 10 chr5 132442222 132442519 -20094740 - ORR1D1 LTR MaLR -4 370 1 1 1595 322 386 0 24 chr5 132442609 132442776 -20094483 - B4A SINE B4 -129 163 1 1 1595 204 318 0 0 chr5 132443198 132443261 -20093998 + CT-rich Low_complexity Low_complexity 3 65 0 1 1595 284 143 18 0 chr5 132443292 132443348 -20093911 + CT-rich Low_complexity Low_complexity 2 58 0 1 1595 1023 295 43 58 chr5 132444954 132445181 -20092078 + RLTR12B LTR ERVK 47 261 -267 1 1595 759 100 0 0 chr5 132445181 132445291 -20091968 + (GGA)n Simple_repeat Simple_repeat 3 112 0 1 1595 1023 295 43 58 chr5 132445291 132445509 -20091750 + RLTR12B LTR ERVK 262 485 -43 1 1595 247 270 70 26 chr5 132445511 132445625 -20091634 + RLTR12B LTR ERVK 367 485 -43 1 1595 22 35 0 0 chr5 132445819 132445848 -20091411 + AT_rich Low_complexity Low_complexity 1 29 0 1 1595 369 145 0 0 chr5 132445888 132445950 -20091309 + (TA)n Simple_repeat Simple_repeat 1 62 0 1 1595 597 315 24 48 chr5 132445958 132446168 -20091091 - B3 SINE B2 -8 208 4 1 1595 2163 151 89 3 chr5 132446459 132446818 -20090441 + ORR1B1 LTR MaLR 1 390 -4 1 1595 702 270 26 0 chr5 132447553 132447705 -20089554 - RSINE1 SINE B4 -8 157 2 1 1595 845 352 23 0 chr5 132447734 132447995 -20089264 - B4 SINE B4 -25 267 1 1 1595 315 296 91 15 chr5 132448337 132448485 -20088774 + MIR3 SINE MIR 21 177 -31 1 1595 227 372 0 0 chr5 132448544 132448622 -20088637 + L2c LINE L2 3113 3190 -197 1 1595 613 292 35 0 chr5 132448822 132448993 -20088266 + B3A SINE B2 3 179 -19 1 1595 383 302 266 0 chr5 132449929 132450098 -20087161 - ID_B1 SINE B4 -7 217 4 1 1595 317 360 28 70 chr5 132450125 132450340 -20086919 + B3 SINE B2 11 216 0 1 1595 502 103 23 0 chr5 132451440 132451527 -20085732 + (GGAA)n Simple_repeat Simple_repeat 1 89 0 1 1595 3593 111 0 2 chr5 132451662 132452148 -20085111 - Lx LINE L1 -3 6651 6167 1 1595 977 298 40 30 chr5 132452680 132453081 -20084178 + MTE2a LTR MaLR 7 419 0 1 1595 385 234 148 51 chr5 132453908 132454082 -20083177 + B4 SINE B4 40 230 -62 1 1595 529 295 14 35 chr5 132454082 132454226 -20083033 + RSINE1 SINE B4 3 143 -22 1 1595 197 83 28 0 chr5 132454297 132454333 -20082926 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1595 659 212 80 48 chr5 132455407 132455595 -20081664 - B3A SINE B2 0 198 5 1 1595 312 172 23 11 chr5 132455788 132455876 -20081383 + (TA)n Simple_repeat Simple_repeat 1 89 0 1 1595 791 283 40 69 chr5 132456336 132456613 -20080646 - MTE2a LTR MaLR -15 364 96 1 1595 457 281 144 25 chr5 132457077 132457278 -20079981 + RMER15 LTR ERVL 336 560 -15 1 1595 515 246 16 71 chr5 132457902 132458029 -20079230 + RSINE1 SINE B4 22 141 -24 1 1595 342 0 0 0 chr5 132458036 132458074 -20079185 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1595 360 0 0 0 chr5 132458136 132458176 -20079083 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1595 396 0 0 0 chr5 132458238 132458282 -20078977 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1595 225 218 138 106 chr5 132458615 132458738 -20078521 - MER72B LTR ERV1 -36 732 606 1 1595 309 353 133 0 chr5 132459484 132459657 -20077602 - B4A SINE B4 -5 287 92 1 1595 535 305 102 26 chr5 132460272 132460474 -20076785 + B3A SINE B2 4 211 -5 1 1595 814 272 17 122 chr5 132460495 132460855 -20076404 - MTEa LTR MaLR -54 325 4 1 1595 24 0 0 0 chr5 132461563 132461587 -20075672 + AT_rich Low_complexity Low_complexity 1 24 0 1 1595 278 304 25 0 chr5 132461886 132461965 -20075294 + GA-rich Low_complexity Low_complexity 1 81 0 1 1595 597 281 0 21 chr5 132462406 132462548 -20074711 - ID_B1 SINE B4 0 224 86 1 1595 425 252 10 0 chr5 132462709 132462808 -20074451 - PB1D10 SINE Alu -1 116 17 1 1595 234 208 175 38 chr5 132462746 132462826 -20074433 - B4A SINE B4 -125 167 77 1 1595 283 319 10 50 chr5 132463087 132463186 -20074073 + B3A SINE B2 88 182 -16 1 1595 195 42 0 0 chr5 132463191 132463215 -20074044 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1595 807 251 50 5 chr5 132464530 132464730 -20072529 + ID_B1 SINE B4 8 216 -8 1 1595 307 258 96 73 chr5 132464770 132464902 -20072357 + MER34A1 LTR ERV1 440 584 -3 1 1595 347 301 227 0 chr5 132465149 132465312 -20071947 + ID_B1 SINE B4 3 202 -22 1 1595 273 261 38 122 chr5 132465214 132465345 -20071914 + B1F2 SINE Alu 7 126 -23 1 1595 2415 151 75 18 chr5 132465585 132465983 -20071276 + MTC LTR MaLR 1 421 0 1 1595 790 247 63 5 chr5 132467228 132467397 -20069862 - ID_B1 SINE B4 -14 210 31 1 1595 372 22 0 0 chr5 132467397 132467442 -20069817 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1595 790 247 63 5 chr5 132467442 132467463 -20069796 - ID SINE ID -194 30 10 1 1595 949 213 5 66 chr5 132467930 132468141 -20069118 + B3A SINE B2 1 198 0 1 1595 207 0 0 0 chr5 132469155 132469178 -20068081 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1595 704 272 76 36 chr5 132469393 132469618 -20067641 + B4 SINE B4 1 234 -58 1 1595 894 228 63 15 chr5 132470950 132471155 -20066104 + ID_B1 SINE B4 2 216 -8 1 1595 207 0 0 0 chr5 132471557 132471580 -20065679 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 1 1595 438 259 8 25 chr5 132471584 132471703 -20065556 - B3 SINE B2 -99 117 1 1 1595 653 315 40 76 chr5 132472101 132472403 -20064856 - B4A SINE B4 0 292 2 1 1595 817 237 105 102 chr5 132472550 132472903 -20064356 - ORR1C2 LTR MaLR 0 384 31 1 1595 472 310 84 21 chr5 132472992 132473183 -20064076 + B4A SINE B4 1 203 -89 1 1595 212 200 0 18 chr5 132473189 132473308 -20063951 + (TG)n Simple_repeat Simple_repeat 1 116 0 1 1595 342 67 0 0 chr5 132474255 132474300 -20062959 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1595 423 0 0 0 chr5 132474589 132474636 -20062623 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1595 509 250 136 0 chr5 132476198 132476330 -20060929 - B3A SINE B2 -48 150 1 1 1595 1095 79 15 3 chr5 132476523 132476870 -20060389 + (CA)n Simple_repeat Simple_repeat 1 351 0 1 1595 275 339 47 74 chr5 132477140 132477364 -20059895 + B4A SINE B4 40 270 -22 1 1595 523 318 18 40 chr5 132477796 132478019 -20059240 - ID_B1 SINE B4 -4 220 3 1 1595 344 351 39 71 chr5 132478652 132478873 -20058386 - L1MEf LINE L1 -3242 2904 2684 1 1595 1142 66 7 0 chr5 132478873 132479009 -20058250 + B1_Mus2 SINE Alu 2 138 -9 1 1595 344 351 39 71 chr5 132479009 132479069 -20058190 - L1MEf LINE L1 -3463 2683 2632 1 1595 28 0 0 0 chr5 132479159 132479187 -20058072 + AT_rich Low_complexity Low_complexity 1 28 0 1 1595 593 311 11 16 chr5 132479283 132479469 -20057790 - B3 SINE B2 -31 185 1 1 1595 421 219 207 17 chr5 132479832 132479948 -20057311 - B3A SINE B2 -56 142 5 1 1595 216 0 0 0 chr5 132479957 132479981 -20057278 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1 1595 345 274 103 73 chr5 132479984 132480016 -20057243 - L1MEf LINE L1 -4146 2096 2060 1 1595 1207 68 0 20 chr5 132480016 132480166 -20057093 - B1_Mus2 SINE Alu 0 147 1 1 1595 345 274 103 73 chr5 132480166 132480463 -20056796 - L1MEf LINE L1 -4183 2059 1757 1 1595 423 125 0 0 chr5 132480600 132480672 -20056587 + (GGGA)n Simple_repeat Simple_repeat 4 75 0 1 1595 387 192 40 27 chr5 132480707 132480782 -20056477 + RSINE1 SINE B4 64 139 -26 1 1595 342 67 0 0 chr5 132480789 132480834 -20056425 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1595 577 247 107 20 chr5 132481118 132481267 -20055992 + RSINE1 SINE B4 3 164 -1 1 1595 209 125 25 0 chr5 132481731 132481771 -20055488 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 1 1595 1135 115 0 7 chr5 132481772 132481921 -20055338 - B1_Mus1 SINE Alu 0 148 1 1 1595 659 223 0 57 chr5 132481960 132482117 -20055142 + B1_Mur1 SINE Alu 2 149 0 1 1595 1088 237 88 86 chr5 132482265 132482662 -20054597 + RMER10B LTR ERVL 1 398 0 1 1595 415 229 110 17 chr5 132483132 132483336 -20053923 - RMER17C LTR ERVK -47 363 1 1 1595 347 347 80 10 chr5 132483959 132484160 -20053099 + Lx8 LINE L1 7259 7473 0 1 1595 239 0 32 0 chr5 132484320 132484351 -20052908 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1595 551 331 14 0 chr5 132485078 132485226 -20052033 + RSINE1 SINE B4 14 163 -2 1 1595 198 103 0 0 chr5 132485244 132485273 -20051986 + (CTAA)n Simple_repeat Simple_repeat 3 31 0 1 1595 296 102 0 20 chr5 132485382 132485432 -20051827 + (CTAA)n Simple_repeat Simple_repeat 3 51 0 1 1595 734 310 138 26 chr5 132485436 132485784 -20051475 + MTD LTR MaLR 13 399 -20 1 1595 624 268 0 108 chr5 132487229 132487405 -20049854 + RSINE1 SINE B4 9 165 0 1 1595 441 325 43 6 chr5 132487441 132487602 -20049657 + B4A SINE B4 108 274 -18 1 1595 558 0 0 0 chr5 132487656 132487718 -20049541 + (GA)n Simple_repeat Simple_repeat 1 62 0 1 1595 220 200 0 0 chr5 132488230 132488285 -20048974 + A-rich Low_complexity Low_complexity 1 55 0 1 1595 372 22 0 0 chr5 132488449 132488494 -20048765 + (CA)n Simple_repeat Simple_repeat 1 45 0 1 1595 201 147 0 0 chr5 132488587 132488621 -20048638 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1595 616 313 23 23 chr5 132488681 132488897 -20048362 + B3 SINE B2 1 216 0 1 1595 438 69 0 0 chr5 132489494 132489552 -20047707 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1595 759 263 138 18 chr5 132489948 132490165 -20047094 - B4A SINE B4 -42 250 8 1 1595 337 300 0 0 chr5 132490187 132490282 -20046977 - L1M5 LINE L1 -600 5589 5495 1 1595 211 322 51 0 chr5 132490910 132490969 -20046290 - ID SINE ID -148 76 15 1 1595 243 0 0 0 chr5 132490976 132491003 -20046256 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1595 713 244 7 0 chr5 132491006 132491141 -20046118 - B1_Mur1 SINE Alu -10 139 4 1 1595 185 0 40 0 chr5 132491144 132491169 -20046090 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1 1595 375 299 117 8 chr5 132491169 132491297 -20045962 - B1_Mm SINE Alu -3 144 3 1 1595 275 253 23 0 chr5 132491400 132491487 -20045772 - L1MEc LINE L1 -5032 1368 1280 1 1595 225 270 187 46 chr5 132491545 132491786 -20045473 - L1MEc LINE L1 -5220 1180 906 1 1595 237 65 0 0 chr5 132491818 132491849 -20045410 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1595 847 287 27 145 chr5 132491977 132492384 -20044875 - ORR1E LTR MaLR 0 359 1 1 1595 322 266 61 30 chr5 132492428 132492560 -20044699 - L1MEc LINE L1 -6133 267 132 1 1595 532 231 9 0 chr5 132492858 132492966 -20044293 - ID_B1 SINE B4 -108 116 8 1 1595 288 232 0 0 chr5 132493024 132493080 -20044179 - RSINE1 SINE B4 -29 136 81 1 1595 257 106 0 0 chr5 132493184 132493231 -20044028 + Lx LINE L1 6608 6654 0 1 1595 861 241 0 6 chr5 132493550 132493721 -20043538 - B3A SINE B2 -23 175 6 1 1595 27 29 0 0 chr5 132494302 132494336 -20042923 + AT_rich Low_complexity Low_complexity 1 34 0 1 1595 185 35 69 0 chr5 132494393 132494422 -20042837 + (CAGAGA)n Simple_repeat Simple_repeat 2 32 0 1 1595 270 81 0 0 chr5 132495835 132495872 -20041387 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1595 212 250 36 0 chr5 132495941 132495997 -20041262 + PB1D10 SINE Alu 59 116 -1 1 1595 487 340 93 0 chr5 132496341 132496535 -20040724 - ID_B1 SINE B4 -11 213 2 1 1595 273 29 0 0 chr5 132497148 132497182 -20040077 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1 1595 282 346 50 38 chr5 132497190 132497349 -20039910 + RSINE1 SINE B4 5 165 0 1 1595 877 243 38 14 chr5 132497899 132498112 -20039147 + ID_B1 SINE B4 2 219 -5 1 1595 745 303 27 0 chr5 132498283 132498471 -20038788 + B3A SINE B2 1 193 -5 1 1595 243 0 0 0 chr5 132499501 132499528 -20037731 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1595 336 24 0 0 chr5 132499611 132499652 -20037607 + (CATA)n Simple_repeat Simple_repeat 3 43 0 1 1595 555 278 23 6 chr5 132500000 132500174 -20037085 - ID_B1 SINE B4 -29 195 19 1 1595 371 322 17 104 chr5 132500225 132500571 -20036688 - ORR1E LTR MaLR -42 317 2 2 1595 411 269 60 85 chr5 132500653 132500852 -20036407 - B3A SINE B2 0 198 5 3 1595 2376 283 38 65 chr5 132501020 132501670 -20035589 + Lx9 LINE L1 6729 7359 -285 4 1595 519 31 0 0 chr5 132501670 132501735 -20035524 + (GA)n Simple_repeat Simple_repeat 1 65 0 5 1595 2376 283 38 65 chr5 132501735 132501972 -20035287 + Lx9 LINE L1 7360 7592 -52 4 1595 39 68 0 0 chr5 132501978 132502052 -20035207 + AT_rich Low_complexity Low_complexity 1 74 0 6 1595 814 264 5 36 chr5 132502547 132502771 -20034488 + B4A SINE B4 1 217 -75 7 1595 460 268 32 124 chr5 132503306 132503523 -20033736 + B3A SINE B2 1 197 -1 8 1595 225 309 29 0 chr5 132503621 132503689 -20033570 - MIR SINE MIR -117 145 76 9 1595 393 168 0 0 chr5 132503972 132504079 -20033180 + GA-rich Low_complexity Low_complexity 1 107 0 1 1595 303 28 0 0 chr5 132504610 132504646 -20032613 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1595 256 77 39 0 chr5 132505296 132505348 -20031911 + (CAAA)n Simple_repeat Simple_repeat 4 57 0 1 1595 267 31 0 0 chr5 132507656 132507688 -20029571 + (TATG)n Simple_repeat Simple_repeat 1 32 0 1 1595 351 265 203 7 chr5 132507697 132507845 -20029414 - B3A SINE B2 -21 177 1 1 1595 281 290 97 0 chr5 132507900 132507993 -20029266 - ID_B1 SINE B4 -119 105 4 1 1595 443 269 251 0 chr5 132508010 132508177 -20029082 - ID_B1 SINE B4 -14 210 2 1 1595 228 100 0 0 chr5 132508256 132508296 -20028963 + (G)n Simple_repeat Simple_repeat 1 40 0 1 1595 488 305 66 0 chr5 132508655 132508806 -20028453 - ORR1E LTR MaLR -7 372 212 1 1595 496 229 9 0 chr5 132508842 132508951 -20028308 - ORR1E LTR MaLR -243 116 7 1 1595 424 244 7 103 chr5 132509144 132509290 -20027969 + B3A SINE B2 51 182 -16 1 1595 651 261 0 0 chr5 132510385 132510527 -20026732 - B3A SINE B2 -47 151 10 2 1595 468 0 0 0 chr5 132510570 132510622 -20026637 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1595 319 304 13 0 chr5 132510640 132510719 -20026540 - B4A SINE B4 -211 81 2 2 1595 228 290 43 14 chr5 132510735 132510805 -20026454 - ID4_ SINE ID -10 73 2 2 1595 635 262 80 20 chr5 132510819 132510873 -20026386 - B3 SINE B2 0 216 157 2 1595 393 39 0 0 chr5 132510873 132510924 -20026335 + (TC)n Simple_repeat Simple_repeat 1 51 0 2 1595 252 0 0 0 chr5 132510924 132510951 -20026308 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1595 228 67 0 0 chr5 132510951 132510981 -20026278 + (TCCA)n Simple_repeat Simple_repeat 3 32 0 2 1595 635 262 80 20 chr5 132510981 132511123 -20026136 - B3 SINE B2 -60 156 8 2 1595 592 161 0 59 chr5 132511510 132511629 -20025630 + PB1D9 SINE Alu 9 120 0 2 1595 738 315 103 27 chr5 132511647 132512094 -20025165 + RMER5 LTR ERV1 54 534 0 2 1595 285 281 0 15 chr5 132512547 132512612 -20024647 - RSINE1 SINE B4 -46 119 56 3 1595 546 16 0 0 chr5 132512674 132512737 -20024522 + (TG)n Simple_repeat Simple_repeat 1 63 0 3 1595 360 298 25 102 chr5 132513375 132513413 -20023846 + B1F SINE Alu 4 32 -117 3 1595 1580 53 5 0 chr5 132513413 132513603 -20023656 + B2_Mm1t SINE B2 2 192 -1 3 1595 398 256 52 37 chr5 132513603 132513721 -20023538 + B1_Mur1 SINE Alu 33 148 -1 3 1595 28 29 0 0 chr5 132513721 132513756 -20023503 + AT_rich Low_complexity Low_complexity 1 35 0 3 1596 280 250 0 89 chr5 132513904 132513983 -20023276 + ID4 SINE ID 12 83 0 3 1596 955 225 259 14 chr5 132514692 132514989 -20022270 + ORR1D2 LTR MaLR 1 370 0 3 1596 503 279 179 5 chr5 132515617 132515801 -20021458 + ID_B1 SINE B4 1 216 -8 3 1596 5191 37 2 7 chr5 132516294 132516913 -20020346 - L1Md_F3 LINE L1 -4 6580 5965 3 1596 645 14 0 0 chr5 132517225 132517299 -20019960 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 3 1596 207 0 0 0 chr5 132517930 132517953 -20019306 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4 1596 414 315 31 6 chr5 132518295 132518458 -20018801 + ID_B1 SINE B4 1 167 -57 4 1596 297 0 0 0 chr5 132518715 132518748 -20018511 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1596 297 357 93 0 chr5 132519202 132519331 -20017928 + B3A SINE B2 8 148 -50 4 1596 429 81 0 0 chr5 132519339 132519401 -20017858 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1596 343 230 67 87 chr5 132519709 132519881 -20017378 - PB1D10 SINE Alu -5 144 1 4 1596 282 316 40 10 chr5 132520013 132520112 -20017147 - PB1D10 SINE Alu -3 114 13 4 1596 210 315 20 61 chr5 132520033 132520131 -20017128 - ID_B1 SINE B4 -52 172 79 4 1596 1157 208 177 37 chr5 132520165 132520515 -20016744 + MTD LTR MaLR 7 405 -14 4 1596 246 156 0 0 chr5 132520583 132520628 -20016631 + T-rich Low_complexity Low_complexity 1 45 0 4 1596 403 352 30 34 chr5 132520691 132520926 -20016333 - L1M3 LINE L1 -509 5671 5438 5 1596 608 268 19 54 chr5 132520941 132521146 -20016113 - B3A SINE B2 0 198 1 5 1596 717 198 29 29 chr5 132521692 132521864 -20015395 + URR1A DNA MER1_type 53 224 -2 5 1596 317 277 9 38 chr5 132521951 132522056 -20015203 + ID_B1 SINE B4 86 187 -37 5 1596 320 239 58 5 chr5 132521970 132522092 -20015167 + B1F SINE Alu 20 149 0 5 1596 188 122 41 0 chr5 132522098 132522147 -20015112 + A-rich Low_complexity Low_complexity 4 54 0 5 1596 1264 199 87 68 chr5 132522694 132523060 -20014199 + ORR1C2 LTR MaLR 12 384 0 5 1596 502 295 7 14 chr5 132523321 132523462 -20013797 + RSINE1 SINE B4 1 140 -25 5 1596 219 69 0 0 chr5 132523957 132523986 -20013273 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1596 591 15 0 0 chr5 132524838 132524906 -20012353 + (TTTCC)n Simple_repeat Simple_repeat 1 68 0 5 1596 879 83 0 0 chr5 132524907 132525028 -20012231 + (TTTC)n Simple_repeat Simple_repeat 4 124 0 6 1596 327 345 86 0 chr5 132525300 132525416 -20011843 - RSINE1 SINE B4 -37 128 3 6 1596 404 307 34 78 chr5 132525554 132525585 -20011674 - B4A SINE B4 -40 252 227 6 1596 796 169 212 11 chr5 132525585 132525764 -20011495 - B3 SINE B2 0 216 2 6 1596 404 312 39 77 chr5 132525764 132525975 -20011284 - B4A SINE B4 -66 226 12 6 1596 218 244 8 31 chr5 132526418 132526545 -20010714 + (TATG)n Simple_repeat Simple_repeat 3 126 0 6 1596 504 278 73 51 chr5 132526545 132526723 -20010536 - B3A SINE B2 -16 182 1 6 1596 297 316 10 0 chr5 132526738 132526836 -20010423 - ID_B1 SINE B4 -5 219 121 6 1596 541 303 61 24 chr5 132526859 132527072 -20010187 - ID_B1 SINE B4 -1 223 3 6 1596 474 284 0 0 chr5 132527612 132527728 -20009531 - RSINE1 SINE B4 -42 123 8 6 1596 607 273 17 11 chr5 132527853 132528027 -20009232 + ID_B1 SINE B4 48 222 -2 6 1596 25 31 0 0 chr5 132528383 132528415 -20008844 + AT_rich Low_complexity Low_complexity 1 32 0 7 1596 696 247 51 6 chr5 132529350 132529525 -20007734 + MTEa LTR MaLR 1 183 -196 7 1596 762 325 0 0 chr5 132529525 132529731 -20007528 + B4A SINE B4 1 206 -86 7 1596 1989 194 64 4 chr5 132529814 132530264 -20006995 + RLTR11A LTR ERVK 50 526 -2 7 1596 867 257 107 16 chr5 132530619 132531062 -20006197 - RMER5 LTR ERV1 -4 530 48 7 1596 329 0 24 0 chr5 132531349 132531390 -20005869 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1596 329 294 0 56 chr5 132531391 132531402 -20005857 - PB1D10 SINE Alu -8 109 8 7 1596 392 278 0 0 chr5 132531402 132531499 -20005760 - ID_B1 SINE B4 -39 185 89 7 1596 454 278 111 0 chr5 132531589 132531751 -20005508 - B3A SINE B2 -18 180 1 7 1596 878 321 58 17 chr5 132532326 132532671 -20004588 + ORR1E LTR MaLR 1 359 0 7 1596 213 247 0 0 chr5 132533428 132533509 -20003750 + T-rich Low_complexity Low_complexity 1 81 0 8 1596 686 257 12 0 chr5 132533822 132533993 -20003266 - ID_B1 SINE B4 -6 218 46 8 1596 517 299 48 24 chr5 132534823 132535029 -20002230 + ID_B1 SINE B4 2 212 -12 8 1596 252 127 63 0 chr5 132535981 132536044 -20001215 + (CAAAC)n Simple_repeat Simple_repeat 2 68 0 8 1596 498 221 133 7 chr5 132536103 132536253 -20001006 + B3 SINE B2 47 215 -1 8 1596 499 300 6 6 chr5 132536256 132536417 -20000842 - ID_B1 SINE B4 -59 165 5 8 1596 357 310 62 28 chr5 132537527 132537703 -19999556 - B3A SINE B2 -16 182 1 8 1596 429 109 0 0 chr5 132538203 132538267 -19998992 + (CA)n Simple_repeat Simple_repeat 1 64 0 8 1596 21 36 0 0 chr5 132538513 132538541 -19998718 + AT_rich Low_complexity Low_complexity 1 28 0 8 1596 338 287 11 0 chr5 132538939 132539033 -19998226 - ID_B1 SINE B4 -126 98 4 8 1596 440 299 72 46 chr5 132539856 132540119 -19997140 + B4A SINE B4 5 274 -18 9 1596 685 160 7 7 chr5 132540152 132540297 -19996962 + (CA)n Simple_repeat Simple_repeat 2 146 0 9 1596 6489 23 12 0 chr5 132540396 132541145 -19996114 + L1Md_F3 LINE L1 5813 6570 -14 9 1596 615 322 28 28 chr5 132541491 132541740 -19995519 - MTD LTR MaLR -145 274 26 9 1596 4664 98 45 31 chr5 132541842 132541978 -19995281 + RMER17A LTR ERVK 1 136 -615 9 1596 180 0 0 0 chr5 132541978 132541998 -19995261 + (C)n Simple_repeat Simple_repeat 1 20 0 9 1596 4664 98 45 31 chr5 132541998 132542602 -19994657 + RMER17A LTR ERVK 137 750 -1 9 1596 724 192 20 7 chr5 132542730 132542882 -19994377 - B4 SINE B4 -22 270 117 9 1596 204 132 26 0 chr5 132542982 132543020 -19994239 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 9 1596 314 303 68 37 chr5 132543067 132543228 -19994031 - B4 SINE B4 -32 260 95 9 1596 366 316 29 92 chr5 132544438 132544644 -19992615 + Lx8 LINE L1 6544 6736 -737 9 1596 360 0 0 0 chr5 132544700 132544740 -19992519 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1596 405 39 0 0 chr5 132544740 132544790 -19992469 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1596 228 35 0 0 chr5 132545181 132545210 -19992049 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1596 265 169 25 25 chr5 132545210 132545289 -19991970 + MTEa LTR MaLR 301 379 0 1 1596 407 287 7 22 chr5 132545368 132545507 -19991752 + B1F2 SINE Alu 7 143 -6 1 1596 666 285 119 63 chr5 132546080 132546365 -19990894 + MTE2a LTR MaLR 79 379 0 1 1596 391 282 121 47 chr5 132546561 132546897 -19990362 + MTE2b LTR MaLR 1 375 -4 1 1596 456 283 0 24 chr5 132547610 132547733 -19989526 - RSINE1 SINE B4 -42 123 4 1 1596 203 253 35 35 chr5 132547736 132547822 -19989437 + L2a LINE L2 3338 3423 -3 1 1596 213 159 0 64 chr5 132549237 132549284 -19987975 + GA-rich Low_complexity Low_complexity 5 48 0 1 1596 348 305 104 28 chr5 132549299 132549481 -19987778 + ID_B1 SINE B4 23 218 -6 1 1596 471 300 5 67 chr5 132551920 132552113 -19985146 + B3A SINE B2 2 182 -16 1 1596 3591 48 16 0 chr5 132552290 132552725 -19984534 - L1_Mus1 LINE L1 0 6567 6126 1 1596 1218 101 34 0 chr5 132552965 132553143 -19984116 + B2_Mm2 SINE B2 1 184 -11 1 1596 180 77 0 0 chr5 132553143 132553169 -19984090 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 1 1596 754 280 5 0 chr5 132553380 132553594 -19983665 - B3 SINE B2 0 216 2 1 1596 250 356 30 0 chr5 132553655 132553756 -19983503 - B4A SINE B4 0 292 189 1 1596 542 251 45 37 chr5 132554649 132554836 -19982423 + B3A SINE B2 21 198 0 1 1596 278 238 35 108 chr5 132554899 132555162 -19982097 + L1M4b LINE L1 3061 3212 -3794 1 1596 542 324 6 0 chr5 132555865 132556047 -19981212 + B3A SINE B2 1 183 -15 1 1596 727 294 0 21 chr5 132556450 132556612 -19980647 + B3 SINE B2 6 164 -52 1 1596 195 129 0 0 chr5 132556612 132556643 -19980616 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1 1596 727 294 0 21 chr5 132556643 132556668 -19980591 + B3 SINE B2 165 189 -27 1 1596 309 302 57 45 chr5 132556742 132557006 -19980253 + L1M4b LINE L1 5723 5989 -1017 1 1596 380 250 91 18 chr5 132557063 132557173 -19980086 - B1F2 SINE Alu -31 118 1 1 1596 247 98 39 19 chr5 132557702 132557754 -19979505 + GA-rich Low_complexity Low_complexity 1 53 0 1 1596 414 139 0 0 chr5 132557771 132557843 -19979416 + (GGGGA)n Simple_repeat Simple_repeat 1 72 0 1 1596 824 159 59 33 chr5 132557942 132558150 -19979109 - B2_Mm2 SINE B2 0 195 1 1 1596 231 283 113 29 chr5 132558219 132558423 -19978836 + L1M4b LINE L1 6552 6772 -267 1 1596 233 175 31 31 chr5 132558460 132558525 -19978734 + L1ME2 LINE L1 5873 5937 -227 1 1596 22 0 0 0 chr5 132558893 132558915 -19978344 + AT_rich Low_complexity Low_complexity 1 22 0 1 1596 818 251 197 13 chr5 132559070 132559385 -19977874 - MTEa LTR MaLR -3 376 4 1 1596 234 200 97 152 chr5 132560428 132560466 -19976793 - B2_Mm2 SINE B2 0 195 165 1 1596 560 40 0 13 chr5 132560466 132560542 -19976717 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1596 405 204 90 138 chr5 132560542 132560691 -19976568 - B3A SINE B2 -31 164 22 1 1596 256 308 144 0 chr5 132560864 132560968 -19976291 + PB1D10 SINE Alu 7 125 -2 1 1596 360 0 0 0 chr5 132561716 132561756 -19975503 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1596 366 282 122 15 chr5 132561838 132562059 -19975200 + B4A SINE B4 1 248 -44 1 1596 526 257 193 23 chr5 132562210 132562469 -19974790 - L3 LINE CR1 -113 4376 4074 1 1596 372 287 132 77 chr5 132562582 132562854 -19974405 + B4A SINE B4 2 288 -4 1 1596 370 359 74 37 chr5 132563227 132563496 -19973763 - B4A SINE B4 -6 286 8 1 1596 583 147 36 9 chr5 132563724 132563834 -19973425 + MTE2a LTR MaLR 267 379 0 1 1596 552 221 221 0 chr5 132564112 132564266 -19972993 - B3A SINE B2 -8 190 3 1 1596 669 58 0 0 chr5 132564769 132564855 -19972404 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 1 1596 391 350 39 48 chr5 132564965 132565196 -19972063 + B4A SINE B4 26 254 -38 1 1596 234 0 0 0 chr5 132565200 132565226 -19972033 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1596 614 306 108 36 chr5 132566090 132566341 -19970918 + B4 SINE B4 22 290 -2 1 1596 294 29 0 0 chr5 132566389 132566424 -19970835 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1596 278 254 15 106 chr5 132567368 132567500 -19969759 + B1F2 SINE Alu 30 149 0 1 1596 222 233 12 110 chr5 132567990 132568072 -19969187 + B3A SINE B2 2 75 -123 1 1596 611 276 63 32 chr5 132568002 132568223 -19969036 + B4A SINE B4 6 233 -59 1 1596 267 31 0 0 chr5 132568292 132568324 -19968935 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1596 1164 51 0 0 chr5 132568326 132568482 -19968777 + (GA)n Simple_repeat Simple_repeat 1 156 0 1 1596 23 86 0 0 chr5 132569264 132569322 -19967937 + AT_rich Low_complexity Low_complexity 1 58 0 1 1596 8666 128 38 12 chr5 132570022 132571606 -19965653 - Lx2 LINE L1 0 6997 5372 1 1596 566 108 88 0 chr5 132571598 132571700 -19965559 + Lx2 LINE L1 5235 5345 -532 1 1596 588 306 5 15 chr5 132572104 132572303 -19964956 + B3A SINE B2 2 198 0 1 1596 238 184 0 0 chr5 132572331 132572380 -19964879 + B1_Mur4 SINE Alu 100 148 -2 1 1596 658 288 31 25 chr5 132572430 132572787 -19964472 + L1MA8 LINE L1 5773 6194 -97 1 1596 273 283 103 9 chr5 132573069 132573176 -19964083 - PB1D9 SINE Alu -2 118 2 1 1596 238 369 100 7 chr5 132573974 132574124 -19963135 - ID_B1 SINE B4 -10 214 51 1 1596 270 115 0 0 chr5 132575032 132575084 -19962175 + (T)n Simple_repeat Simple_repeat 1 52 0 1 1596 318 274 93 8 chr5 132575142 132575186 -19962073 + ID SINE ID 31 84 -140 1 1596 243 229 60 103 chr5 132575186 132575303 -19961956 + PB1D10 SINE Alu 2 113 -4 1 1596 651 270 127 20 chr5 132575509 132575762 -19961497 - B4A SINE B4 -12 280 1 1 1596 236 222 31 16 chr5 132576243 132576307 -19960952 - PB1D10 SINE Alu -11 106 42 1 1596 1303 285 8 23 chr5 132576802 132577187 -19960072 + MTEa LTR MaLR 1 379 0 1 1596 324 260 168 81 chr5 132578004 132578201 -19959058 + B4A SINE B4 5 218 -74 1 1596 324 0 0 0 chr5 132578286 132578322 -19958937 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1596 384 270 54 18 chr5 132579053 132579219 -19958040 + L1MC1 LINE L1 5733 5904 -429 1 1596 420 350 7 0 chr5 132579248 132579391 -19957868 - ID_B1 SINE B4 -3 221 78 1 1596 728 292 63 44 chr5 132579566 132579949 -19957310 + L1MC1 LINE L1 5925 6314 -19 1 1596 398 271 83 28 chr5 132579970 132580114 -19957145 + RSINE1 SINE B4 1 152 -13 1 1596 357 82 0 0 chr5 132580890 132580939 -19956320 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1596 525 286 8 27 chr5 132580942 132581120 -19956139 - B3A SINE B2 -31 185 10 1 1596 221 301 14 0 chr5 132581839 132581912 -19955347 + (TATG)n Simple_repeat Simple_repeat 1 74 0 1 1596 281 256 238 8 chr5 132583607 132583729 -19953530 + MTEa LTR MaLR 16 165 -214 1 1596 287 200 32 43 chr5 132583829 132583923 -19953336 + GA-rich Low_complexity Low_complexity 1 93 0 1 1596 751 278 24 19 chr5 132584757 132584966 -19952293 + ID_B1 SINE B4 9 218 -6 1 1596 434 61 15 0 chr5 132585030 132585096 -19952163 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1596 439 317 97 47 chr5 132585172 132585450 -19951809 - RCHARR1 DNA MER1_type -679 295 4 1 1596 190 262 139 66 chr5 132586067 132586218 -19951041 - MIR SINE MIR -44 218 57 1 1596 225 294 0 68 chr5 132586398 132586515 -19950744 + PB1D10 SINE Alu 1 109 -8 1 1596 573 276 65 14 chr5 132586695 132586971 -19950288 - MER33 DNA MER1_type -34 290 1 1 1596 376 237 64 71 chr5 132588251 132588392 -19948867 + ID_B1 SINE B4 77 216 -8 1 1596 706 290 27 28 chr5 132588437 132588669 -19948590 + B3A SINE B2 1 215 -1 1 1596 708 222 81 15 chr5 132588677 132588874 -19948385 + B3 SINE B2 1 210 -6 1 1596 333 140 0 0 chr5 132590090 132590147 -19947112 + (TTTC)n Simple_repeat Simple_repeat 3 59 0 1 1596 2964 143 74 0 chr5 132590160 132590657 -19946602 - Lx4A LINE L1 0 7058 6525 1 1596 445 268 10 91 chr5 132590820 132591017 -19946242 + B3A SINE B2 2 182 -16 1 1596 654 320 25 8 chr5 132592235 132592464 -19944795 + B4 SINE B4 21 253 -39 1 1596 1083 210 88 27 chr5 132592464 132592758 -19944501 + MT2A LTR ERVL 3 314 -219 1 1596 313 357 50 13 chr5 132593062 132593221 -19944038 + B4A SINE B4 127 291 -1 1 1596 597 141 0 0 chr5 132593274 132593373 -19943886 + (GGA)n Simple_repeat Simple_repeat 2 100 0 1 1596 215 277 106 84 chr5 132593425 132593567 -19943692 + ID_B1 SINE B4 76 220 -4 1 1596 565 289 35 51 chr5 132593837 132594034 -19943225 + B3A SINE B2 5 198 0 1 1596 1095 82 0 52 chr5 132594224 132594379 -19942880 - B1_Mus1 SINE Alu 0 148 2 1 1596 1513 30 0 24 chr5 132594581 132594809 -19942450 - L1Md_F2 LINE L1 0 6582 6382 1 1596 195 42 0 0 chr5 132594809 132594833 -19942426 + (T)n Simple_repeat Simple_repeat 1 24 0 1 1596 39872 60 1 23 chr5 132594833 132601718 -19935541 - L1Md_T LINE L1 0 6582 99 1 1596 356 298 41 93 chr5 132601816 132601881 -19935378 - B3A SINE B2 0 216 161 1 1596 465 19 0 0 chr5 132601881 132601935 -19935324 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1596 356 289 51 67 chr5 132601935 132602099 -19935160 - B3A SINE B2 -36 162 1 1 1596 252 0 0 0 chr5 132602191 132602219 -19935040 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 1 1596 468 123 0 0 chr5 132603135 132603208 -19934051 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1596 344 327 18 0 chr5 132603435 132603545 -19933714 - ID_B1 SINE B4 -30 194 83 1 1596 324 0 0 0 chr5 132603952 132603988 -19933271 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1596 494 288 19 6 chr5 132604212 132604369 -19932890 + RSINE1 SINE B4 3 161 -4 2 1596 225 0 0 0 chr5 132604783 132604808 -19932451 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 2 1596 685 331 6 0 chr5 132605244 132605419 -19931840 - B3A SINE B2 -22 176 1 2 1596 209 235 0 12 chr5 132606743 132606829 -19930430 + CT-rich Low_complexity Low_complexity 1 85 0 2 1596 266 306 147 66 chr5 132607150 132607409 -19929850 + B4A SINE B4 5 284 -8 2 1596 392 311 6 28 chr5 132608469 132608651 -19928608 + (TATG)n Simple_repeat Simple_repeat 2 179 0 2 1596 568 264 126 35 chr5 132608684 132608939 -19928320 - B4A SINE B4 -14 278 1 2 1596 293 215 38 12 chr5 132609986 132610066 -19927193 + B3A SINE B2 1 82 -113 2 1596 384 22 0 0 chr5 132610124 132610169 -19927090 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1596 1017 234 126 31 chr5 132611224 132611582 -19925677 + MTD LTR MaLR 15 406 -13 2 1596 205 221 38 9 chr5 132612605 132612710 -19924549 + GA-rich Low_complexity Low_complexity 2 109 0 2 1596 445 225 22 0 chr5 132612885 132612974 -19924285 - ID_B1 SINE B4 -7 217 127 2 1596 275 148 91 80 chr5 132613408 132613496 -19923763 - MTD LTR MaLR -2 377 289 2 1596 195 42 0 0 chr5 132613498 132613522 -19923737 + (TAG)n Simple_repeat Simple_repeat 3 26 0 2 1596 660 219 112 6 chr5 132613534 132613713 -19923546 - B3 SINE B2 -6 210 13 2 1596 383 204 124 160 chr5 132613715 132613884 -19923375 - MTD LTR MaLR -205 214 27 2 1596 225 218 209 38 chr5 132614036 132614141 -19923118 + RMER15 LTR ERVL 439 561 -14 2 1596 240 299 13 13 chr5 132614226 132614304 -19922955 + MIRb SINE MIR 116 193 -75 2 1596 485 261 189 37 chr5 132614533 132614724 -19922535 + ID_B1 SINE B4 2 221 -3 2 1596 753 275 5 14 chr5 132614936 132615146 -19922113 + ID_B1 SINE B4 2 209 -15 2 1596 240 111 0 0 chr5 132615150 132615186 -19922073 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1596 189 107 0 0 chr5 132615502 132615530 -19921729 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2 1596 25 0 0 0 chr5 132615920 132615945 -19921314 + AT_rich Low_complexity Low_complexity 1 25 0 2 1596 454 221 119 107 chr5 132615960 132616137 -19921122 - B2_Mm2 SINE B2 -16 179 1 2 1596 358 292 63 42 chr5 132616161 132616304 -19920955 - B3A SINE B2 -6 192 47 2 1596 665 253 61 6 chr5 132616315 132616478 -19920781 - B3 SINE B2 -44 172 1 2 1596 317 283 46 51 chr5 132616876 132617051 -19920208 + MTEa LTR MaLR 206 379 0 2 1596 332 224 58 48 chr5 132617888 132617991 -19919268 + B3A SINE B2 15 118 -80 2 1596 593 228 207 12 chr5 132618357 132618526 -19918733 - B4 SINE B4 -90 202 1 2 1596 392 324 0 0 chr5 132619509 132619620 -19917639 - ID_B1 SINE B4 0 224 114 2 1596 476 252 99 0 chr5 132619678 132619809 -19917450 - ID_B1 SINE B4 -62 162 19 2 1596 273 273 147 19 chr5 132619852 132620009 -19917250 + MIR3 SINE MIR 18 194 -14 2 1596 271 253 30 81 chr5 132620211 132620310 -19916949 + RSINE1 SINE B4 3 96 -69 2 1596 216 132 26 0 chr5 132620311 132620349 -19916910 + RSINE1 SINE B4 69 107 -58 2 1596 223 259 0 17 chr5 132620511 132620570 -19916689 + (CCA)n Simple_repeat Simple_repeat 3 60 0 2 1596 219 244 0 0 chr5 132620723 132620768 -19916491 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1596 1210 43 0 0 chr5 132621361 132621502 -19915757 - B1_Mus1 SINE Alu -7 141 1 2 1596 432 0 0 0 chr5 132621653 132621701 -19915558 + (GA)n Simple_repeat Simple_repeat 1 48 0 2 1596 346 340 73 53 chr5 132622274 132622575 -19914684 + Lx8 LINE L1 7152 7458 -15 2 1596 279 0 0 0 chr5 132623007 132623038 -19914221 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1596 409 255 10 0 chr5 132623098 132623196 -19914063 - B3A SINE B2 -99 99 1 2 1596 337 349 13 38 chr5 132623765 132623976 -19913283 + MIR SINE MIR 5 214 -54 2 1596 1106 261 100 21 chr5 132624017 132624448 -19912811 - RMER5 LTR ERV1 0 534 70 2 1596 360 284 138 45 chr5 132624798 132625045 -19912214 + MT2A LTR ERVL 253 522 -11 2 1596 532 244 0 8 chr5 132625276 132625396 -19911863 - ID_B1 SINE B4 -15 209 91 2 1596 299 297 0 71 chr5 132625519 132625617 -19911642 + RSINE1 SINE B4 44 134 -31 2 1596 277 221 88 80 chr5 132625953 132626066 -19911193 + MER113 DNA MER1_type 217 330 -191 2 1596 878 277 93 25 chr5 132626132 132626487 -19910772 + MTE2a LTR MaLR 1 379 0 2 1596 543 248 28 21 chr5 132628234 132628378 -19908881 - B1_Mur1 SINE Alu -2 147 3 2 1596 497 269 77 113 chr5 132628380 132628707 -19908552 + MTE2a LTR MaLR 8 322 -57 2 1596 315 103 0 49 chr5 132628856 132628938 -19908321 + A-rich Low_complexity Low_complexity 6 83 0 2 1596 4516 166 106 17 chr5 132629132 132629966 -19907293 + RMER13B LTR ERVK 1 908 0 2 1596 1043 53 15 0 chr5 132630778 132630910 -19906349 + B1_Mm SINE Alu 2 135 -12 2 1596 209 33 0 32 chr5 132630922 132630953 -19906306 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 2 1596 584 294 47 14 chr5 132630972 132631186 -19906073 + ID_B1 SINE B4 3 223 -1 2 1596 414 369 0 0 chr5 132632531 132632699 -19904560 + MTE2b LTR MaLR 30 197 -182 2 1596 222 218 18 0 chr5 132632950 132633005 -19904254 + (CAGAGA)n Simple_repeat Simple_repeat 5 60 0 2 1596 507 332 43 21 chr5 132633008 132633269 -19903990 + B4A SINE B4 5 277 -15 2 1596 591 296 25 0 chr5 132633935 132634094 -19903165 + RSINE1 SINE B4 1 163 -2 2 1596 21 57 0 0 chr5 132634105 132634140 -19903119 + AT_rich Low_complexity Low_complexity 1 35 0 2 1596 213 39 0 0 chr5 132634260 132634286 -19902973 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2 1596 718 168 0 34 chr5 132634320 132634468 -19902791 + Lx7 LINE L1 7554 7696 0 2 1596 335 335 27 97 chr5 132634974 132635159 -19902100 - B4A SINE B4 -120 172 1 2 1596 1153 243 88 12 chr5 132635376 132635717 -19901542 + MTEa LTR MaLR 11 377 -2 2 1596 261 0 0 0 chr5 132636000 132636029 -19901230 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 1596 272 255 91 50 chr5 132636214 132636313 -19900946 + ID_B1 SINE B4 55 157 -67 2 1596 462 327 25 25 chr5 132636321 132636484 -19900775 + RSINE1 SINE B4 1 163 -2 2 1596 311 44 22 0 chr5 132636504 132636549 -19900710 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 2 1596 473 286 9 0 chr5 132636549 132636661 -19900598 + B3A SINE B2 1 113 -85 2 1596 30 89 0 0 chr5 132636711 132636790 -19900469 + AT_rich Low_complexity Low_complexity 1 79 0 2 1596 206 266 193 0 chr5 132638963 132639072 -19898187 + L2 LINE L2 2685 2814 -605 2 1596 590 285 6 6 chr5 132639080 132639239 -19898020 + ID_B1 SINE B4 1 159 -65 2 1596 342 0 0 0 chr5 132639251 132639289 -19897970 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1596 538 159 14 30 chr5 132639291 132639591 -19897668 + (TCTCTG)n Simple_repeat Simple_repeat 1 294 0 2 1596 911 248 101 140 chr5 132639730 132640166 -19897093 - MTD LTR MaLR 0 419 1 2 1596 1376 219 170 80 chr5 132640166 132640372 -19896887 - MTD-int LTR MaLR 0 1258 1022 2 1596 336 24 0 0 chr5 132640372 132640413 -19896846 + (TAAAA)n Simple_repeat Simple_repeat 1 41 0 2 1596 1376 219 170 80 chr5 132640413 132640830 -19896429 - MTD-int LTR MaLR -237 1021 579 2 1596 232 240 0 0 chr5 132640905 132640955 -19896304 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1596 237 417 78 28 chr5 132641879 132642059 -19895200 - B3 SINE B2 -27 189 1 2 1596 641 253 139 78 chr5 132642491 132642810 -19894449 + ORR1E LTR MaLR 5 370 0 2 1596 453 19 0 0 chr5 132643060 132643114 -19894145 + (TC)n Simple_repeat Simple_repeat 1 54 0 2 1596 258 32 0 0 chr5 132643116 132643147 -19894112 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1596 319 53 0 208 chr5 132643148 132643220 -19894039 - B1_Mur4 SINE Alu -93 57 1 2 1596 279 250 184 20 chr5 132643852 132643950 -19893309 + B3A SINE B2 20 133 -65 2 1596 261 0 0 0 chr5 132643968 132643997 -19893262 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1596 199 389 19 0 chr5 132644513 132644621 -19892638 - L3 LINE CR1 -1067 3422 3313 2 199 572 253 59 94 chr5 132644635 132645030 -19892229 - MTE2a LTR MaLR -26 393 1 2 1597 201 301 0 27 chr5 132645481 132645556 -19891703 + (TATATG)n Simple_repeat Simple_repeat 1 73 0 2 1597 805 303 16 16 chr5 132645556 132645811 -19891448 - B4 SINE B4 -29 263 9 2 1597 428 325 36 12 chr5 132646714 132646879 -19890380 + Tigger9b DNA MER2_type 21 189 -435 2 1597 932 296 34 8 chr5 132647452 132647717 -19889542 + MTE2b LTR MaLR 3 274 -105 2 1597 337 214 329 0 chr5 132647712 132647839 -19889420 + MTE2b LTR MaLR 211 378 -1 2 1597 239 250 0 0 chr5 132648912 132648968 -19888291 - PB1D10 SINE Alu -41 76 21 2 1597 333 0 0 0 chr5 132649079 132649116 -19888143 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1597 333 0 0 0 chr5 132649116 132649152 -19888107 + (GA)n Simple_repeat Simple_repeat 1 37 0 2 1597 605 268 32 6 chr5 132649156 132649314 -19887945 - B3A SINE B2 -36 162 1 2 1597 269 333 57 38 chr5 132649794 132649953 -19887306 + RSINE1 SINE B4 4 165 0 2 1597 378 301 190 0 chr5 132650716 132650879 -19886380 + ID_B1 SINE B4 6 199 -25 2 1597 4459 10 2 12 chr5 132651015 132651513 -19885746 + MT2_Mm LTR ERVL 1 493 0 2 1597 48404 15 6 1 chr5 132651513 132656844 -19880415 + MERVL-int LTR ERVL 1 5360 -125 2 1597 362 167 46 35 chr5 132656844 132656931 -19880328 + ORR1A3-int LTR MaLR 553 640 -1323 2 1597 321 0 0 0 chr5 132656931 132656969 -19880290 + MERVL-int LTR ERVL 5448 5485 0 2 1597 4459 10 2 12 chr5 132656969 132657467 -19879792 + MT2_Mm LTR ERVL 1 493 0 2 1597 2053 173 58 2 chr5 132657600 132657995 -19879264 - MTC LTR MaLR -4 417 1 2 1597 256 360 114 61 chr5 132659411 132659639 -19877620 + B4A SINE B4 42 281 -11 2 1597 198 0 0 0 chr5 132659873 132659895 -19877364 + (TG)n Simple_repeat Simple_repeat 2 23 0 3 1597 240 35 0 0 chr5 132661127 132661156 -19876103 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1597 213 231 0 0 chr5 132661156 132661195 -19876064 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1597 24 53 0 0 chr5 132663405 132663443 -19873816 + AT_rich Low_complexity Low_complexity 1 38 0 3 1597 297 242 131 40 chr5 132663799 132663898 -19873361 + RSINE1 SINE B4 48 155 -10 3 1597 198 0 0 0 chr5 132663905 132663927 -19873332 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1597 1089 238 127 9 chr5 132664402 132664733 -19872526 + MTEa LTR MaLR 9 378 -1 3 1597 714 43 0 0 chr5 132664850 132664944 -19872315 + (CA)n Simple_repeat Simple_repeat 2 95 0 3 1597 457 278 53 57 chr5 132665155 132665456 -19871803 + L1MDa LINE L1 998 1297 -5336 3 1597 393 250 114 72 chr5 132665466 132665729 -19871530 + B4A SINE B4 1 274 -18 3 1597 288 0 0 0 chr5 132666018 132666050 -19871209 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1597 229 178 0 22 chr5 132666071 132666117 -19871142 + L1M3 LINE L1 4717 4761 -1379 3 1597 534 287 64 121 chr5 132666148 132666276 -19870983 + MTE2a LTR MaLR 45 183 -196 3 1597 1827 178 78 16 chr5 132666276 132666659 -19870600 + MTB_Mm LTR MaLR 1 407 0 3 1597 534 287 64 121 chr5 132666659 132666827 -19870432 + MTE2a LTR MaLR 184 324 -55 3 1597 267 311 0 0 chr5 132666913 132666987 -19870272 + ID2 SINE ID 3 76 -7 3 1597 901 115 25 25 chr5 132667698 132667859 -19869400 - B2_Mm2 SINE B2 -33 162 2 3 1597 465 245 0 0 chr5 132668548 132668654 -19868605 + PB1D10 SINE Alu 5 110 -7 3 1597 222 37 0 0 chr5 132669254 132669281 -19867978 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1597 795 237 36 50 chr5 132669548 132669770 -19867489 + ID_B1 SINE B4 5 223 -1 3 1597 285 29 0 0 chr5 132669772 132669806 -19867453 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1597 268 236 273 0 chr5 132671842 132671952 -19865307 + B1F SINE Alu 1 140 -9 3 1597 21 82 0 0 chr5 132672026 132672075 -19865184 + AT_rich Low_complexity Low_complexity 1 49 0 3 1597 815 306 51 16 chr5 132672079 132672454 -19864805 - MTD LTR MaLR 0 419 32 3 1597 310 128 0 0 chr5 132672461 132672508 -19864751 - B3A SINE B2 -148 50 4 3 1597 297 155 0 0 chr5 132672514 132672572 -19864687 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 1597 963 258 78 19 chr5 132672920 132673173 -19864086 - ORR1E LTR MaLR 0 359 87 3 1597 339 130 0 0 chr5 132673173 132673227 -19864032 + (CAT)n Simple_repeat Simple_repeat 2 55 0 3 1597 963 258 78 19 chr5 132673227 132673293 -19863966 - ORR1E LTR MaLR -273 86 21 3 1597 812 198 209 0 chr5 132673306 132673478 -19863781 - B3 SINE B2 -6 210 3 3 1597 684 145 169 0 chr5 132674414 132674538 -19862721 + B1_Mus2 SINE Alu 1 145 -2 3 1597 212 255 142 0 chr5 132675070 132675176 -19862083 - MIR SINE MIR -69 139 19 3 1597 544 320 116 39 chr5 132675348 132675729 -19861530 - MTD LTR MaLR 0 419 10 3 1597 486 0 0 0 chr5 132676892 132676946 -19860313 + (TC)n Simple_repeat Simple_repeat 1 54 0 3 1597 252 0 0 0 chr5 132676946 132676973 -19860286 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 1597 408 368 16 52 chr5 132677802 132678054 -19859205 - B4 SINE B4 -48 244 2 3 1597 549 270 67 51 chr5 132678659 132678854 -19858405 + B3A SINE B2 1 198 0 3 1597 207 194 0 0 chr5 132680921 132680957 -19856302 + CT-rich Low_complexity Low_complexity 1 36 0 3 1597 403 319 29 0 chr5 132680958 132681096 -19856163 - B3A SINE B2 -41 157 16 3 1597 643 246 148 33 chr5 132681108 132681405 -19855854 - ORR1E LTR MaLR -6 353 1 3 1597 331 382 70 12 chr5 132681978 132682150 -19855109 - B3A SINE B2 -16 182 1 3 1597 211 360 106 7 chr5 132682351 132682502 -19854757 + MIRb SINE MIR 82 247 -21 3 1597 342 115 0 0 chr5 132682794 132682846 -19854413 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 1597 297 0 0 0 chr5 132682846 132682878 -19854381 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 1597 252 77 0 0 chr5 132682901 132682940 -19854319 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 3 1597 895 252 16 124 chr5 132682966 132683288 -19853971 + B4 SINE B4 2 288 -4 3 1597 452 223 87 0 chr5 132683847 132683950 -19853309 - PB1D9 SINE Alu -7 113 2 3 1597 254 226 38 0 chr5 132684161 132684249 -19853010 + B4 SINE B4 1 95 -197 3 1597 363 78 0 0 chr5 132684297 132684348 -19852911 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1597 2526 128 8 0 chr5 132684576 132684951 -19852308 + Lx2B LINE L1 6620 6997 -3 3 1597 405 0 0 0 chr5 132684980 132685025 -19852234 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1597 234 0 0 0 chr5 132685025 132685051 -19852208 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1597 279 0 0 0 chr5 132685051 132685082 -19852177 + (TGG)n Simple_repeat Simple_repeat 3 33 0 3 1597 240 226 0 88 chr5 132685201 132685269 -19851990 + ID_B1 SINE B4 121 182 -42 3 1597 563 65 0 0 chr5 132686262 132686339 -19850920 + B1_Mus2 SINE Alu 71 147 0 3 1597 382 283 166 4 chr5 132688282 132688574 -19848685 - RMER15-int LTR ERVL -3344 1655 1317 3 1597 279 308 0 0 chr5 132688606 132688697 -19848562 - RMER15-int LTR ERVL -3750 1249 1159 3 1597 261 0 0 0 chr5 132688780 132688809 -19848450 + (A)n Simple_repeat Simple_repeat 1 29 0 3 1597 1172 316 168 16 chr5 132688809 132689506 -19847753 - RMER15-int LTR ERVL -3996 1003 201 3 1597 314 338 61 0 chr5 132689698 132689846 -19847413 - RMER15 LTR ERVL -15 560 404 3 1597 260 246 148 16 chr5 132690723 132690851 -19846408 + B3 SINE B2 1 145 -71 3 1597 538 276 0 0 chr5 132691836 132691970 -19845289 - B1_Mur1 SINE Alu -13 136 3 3 1597 450 317 7 35 chr5 132692377 132692521 -19844738 + B1_Mur1 SINE Alu 10 149 0 3 1597 792 260 54 0 chr5 132692569 132692773 -19844486 + ID_B1 SINE B4 2 216 -8 3 1597 24 0 0 0 chr5 132692786 132692810 -19844449 + AT_rich Low_complexity Low_complexity 1 24 0 3 1597 207 0 0 0 chr5 132693113 132693136 -19844123 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1597 234 91 0 0 chr5 132693917 132693950 -19843309 + (TTG)n Simple_repeat Simple_repeat 3 35 0 3 1597 306 152 0 0 chr5 132694144 132694203 -19843056 + A-rich Low_complexity Low_complexity 1 59 0 3 1597 343 370 20 7 chr5 132694220 132694367 -19842892 + RSINE1 SINE B4 2 150 -15 3 1597 363 44 0 0 chr5 132694622 132694667 -19842592 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1597 423 0 0 0 chr5 132694875 132694922 -19842337 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1597 313 306 10 10 chr5 132694945 132695044 -19842215 + GA-rich Low_complexity Low_complexity 6 104 0 3 1597 245 267 148 0 chr5 132695334 132695435 -19841824 + PB1D10 SINE Alu 1 116 -1 3 1597 1049 217 14 9 chr5 132695507 132695721 -19841538 + ID_B1 SINE B4 3 217 -7 3 1597 223 256 0 0 chr5 132695726 132695769 -19841490 + polypurine Low_complexity Low_complexity 2 44 0 3 1597 384 22 0 0 chr5 132696671 132696716 -19840543 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1597 481 313 71 0 chr5 132697179 132697377 -19839882 + B4A SINE B4 2 213 -79 3 1597 407 237 118 9 chr5 132697602 132697712 -19839547 - B3A SINE B2 -69 129 9 3 1597 222 128 0 0 chr5 132697729 132697768 -19839491 + (TCCC)n Simple_repeat Simple_repeat 1 39 0 3 1597 223 298 0 0 chr5 132698318 132698375 -19838884 + PB1 SINE Alu 1 57 -70 3 1597 635 279 11 22 chr5 132699109 132699292 -19837967 + B3A SINE B2 3 183 -15 3 1597 1952 184 21 23 chr5 132699305 132699740 -19837519 - Lx LINE L1 -4 6650 6217 3 1597 459 244 82 25 chr5 132701798 132701920 -19835339 - B3A SINE B2 -69 129 1 3 1597 645 254 122 0 chr5 132702237 132702426 -19834833 - B3 SINE B2 -4 212 1 3 1597 258 258 109 40 chr5 132702426 132702527 -19834732 + MTE2a LTR MaLR 3 110 -269 3 1597 476 280 0 0 chr5 132703122 132703229 -19834030 + RSINE1 SINE B4 16 122 -43 3 1597 245 311 14 0 chr5 132703298 132703372 -19833887 + (CA)n Simple_repeat Simple_repeat 2 76 0 3 1597 331 387 65 0 chr5 132703405 132703573 -19833686 - B3A SINE B2 -14 184 6 3 1597 315 397 77 11 chr5 132704280 132704461 -19832798 - ID_B1 SINE B4 -27 197 5 3 1597 227 235 0 0 chr5 132704744 132704781 -19832478 + polypyrimidine Low_complexity Low_complexity 17 53 0 3 1597 258 81 0 0 chr5 132704781 132704818 -19832441 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 1597 227 235 0 0 chr5 132704818 132704831 -19832428 + polypyrimidine Low_complexity Low_complexity 4 16 0 3 1597 720 104 16 8 chr5 132704871 132704997 -19832262 + (GGGAGA)n Simple_repeat Simple_repeat 6 132 0 3 1597 194 30 0 83 chr5 132706387 132706423 -19830836 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 3 1597 29 28 0 0 chr5 132707851 132707887 -19829372 + AT_rich Low_complexity Low_complexity 1 36 0 3 1597 702 267 15 39 chr5 132707968 132708171 -19829088 - B3A SINE B2 0 198 1 3 1597 313 307 36 73 chr5 132708868 132709005 -19828254 + ZP3AR Satellite Satellite 44 175 -37 3 1597 330 45 0 0 chr5 132709307 132709351 -19827908 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1597 578 309 29 0 chr5 132709449 132709624 -19827635 + B3A SINE B2 3 182 -16 3 1597 398 291 98 11 chr5 132709663 132709937 -19827322 + L1MEc LINE L1 1289 1586 -4814 3 1597 180 0 0 0 chr5 132709971 132709991 -19827268 + (GA)n Simple_repeat Simple_repeat 2 21 0 3 1597 231 276 65 93 chr5 132710196 132710412 -19826847 + L1MEc LINE L1 1901 2110 -4290 3 1597 288 0 0 0 chr5 132710415 132710447 -19826812 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1597 264 234 69 55 chr5 132710794 132710939 -19826320 + L1MEc LINE L1 2552 2698 -3621 3 1597 272 274 58 52 chr5 132711255 132711409 -19825850 + L1M5 LINE L1 2884 3038 -3108 3 1597 798 201 0 20 chr5 132711533 132711685 -19825574 + B1_Mur3 SINE Alu 1 149 0 3 1597 444 67 0 0 chr5 132711732 132711792 -19825467 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 3 1597 318 202 125 27 chr5 132711834 132711946 -19825313 + L1_Mur3 LINE L1 3111 3233 -2647 4 1597 183 42 0 0 chr5 132712210 132712234 -19825025 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 4 1597 226 247 20 51 chr5 132712475 132712573 -19824686 + GA-rich Low_complexity Low_complexity 2 96 0 4 1597 228 205 0 0 chr5 132713344 132713383 -19823876 + polypurine Low_complexity Low_complexity 4 42 0 4 1597 707 293 43 130 chr5 132713439 132713831 -19823428 + MTE2a LTR MaLR 1 358 -21 4 1597 471 304 29 13 chr5 132715609 132715857 -19821402 + MTE2a LTR MaLR 63 365 -14 4 1597 405 81 0 0 chr5 132716091 132716153 -19821106 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1597 243 239 68 27 chr5 132716960 132717017 -19820242 + B3A SINE B2 113 172 -26 4 1597 342 0 0 0 chr5 132717017 132717055 -19820204 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1597 243 239 68 27 chr5 132717055 132717070 -19820189 + B3A SINE B2 173 188 -10 4 1597 309 51 0 0 chr5 132717455 132717494 -19819765 + (TG)n Simple_repeat Simple_repeat 2 40 0 4 1597 417 258 0 0 chr5 132717909 132718029 -19819230 + (CATA)n Simple_repeat Simple_repeat 1 120 0 4 1597 540 251 70 4 chr5 132718374 132718561 -19818698 - B3A SINE B2 -13 203 1 4 1597 407 330 69 20 chr5 132718697 132718901 -19818358 + ID_B1 SINE B4 11 224 0 4 1597 445 296 106 52 chr5 132719431 132719829 -19817430 + L1MA6 LINE L1 5799 6232 -68 4 1597 494 309 0 0 chr5 132719860 132719986 -19817273 + RSINE1 SINE B4 31 156 -9 4 1597 444 282 49 49 chr5 132720524 132720707 -19816552 - RMER15 LTR ERVL -46 529 347 4 1597 302 24 48 0 chr5 132721362 132721404 -19815855 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 4 1597 1147 61 13 7 chr5 132721404 132721542 -19815717 - B1_Mur4 SINE Alu -10 140 1 4 1597 426 340 0 19 chr5 132721751 132721910 -19815349 - B3A SINE B2 0 198 43 4 1597 1076 96 12 12 chr5 132721941 132722109 -19815150 - B2_Mm2 SINE B2 -15 180 13 4 1597 5848 87 1 4 chr5 132722109 132722903 -19814356 + L1_Mus4 LINE L1 5845 6636 0 4 1597 292 219 13 52 chr5 132723222 132723299 -19813960 + B4 SINE B4 215 288 -4 4 1597 387 89 0 0 chr5 132723363 132723419 -19813840 + (TG)n Simple_repeat Simple_repeat 2 57 0 4 1597 394 333 0 84 chr5 132723468 132723599 -19813660 - RSINE1 SINE B4 -44 121 2 4 1597 188 200 0 0 chr5 132723695 132723730 -19813529 - MER5A DNA MER1_type -148 41 7 4 1597 483 314 96 8 chr5 132724876 132725126 -19812133 + B4 SINE B4 3 274 -18 4 1597 189 74 0 0 chr5 132725136 132725163 -19812096 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1597 23 0 0 0 chr5 132725804 132725827 -19811432 + AT_rich Low_complexity Low_complexity 1 23 0 4 1597 366 312 18 36 chr5 132725846 132726012 -19811247 - B3A SINE B2 -18 180 18 4 1597 5291 207 79 27 chr5 132726085 132727705 -19809554 - L1_Mur3 LINE L1 -6415 1297 1 4 1597 21 0 0 0 chr5 132728094 132728115 -19809144 + AT_rich Low_complexity Low_complexity 1 21 0 4 1597 714 24 0 0 chr5 132728734 132728818 -19808441 + (GGAGA)n Simple_repeat Simple_repeat 2 85 0 4 1597 31 26 0 0 chr5 132729609 132729647 -19807612 + AT_rich Low_complexity Low_complexity 1 38 0 4 1597 456 104 0 0 chr5 132730674 132730741 -19806518 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1597 207 0 0 0 chr5 132733173 132733196 -19804063 + (A)n Simple_repeat Simple_repeat 1 23 0 4 1597 232 300 0 14 chr5 132733492 132733563 -19803696 + MIR3 SINE MIR 88 157 -51 4 1597 568 298 46 17 chr5 132735227 132735401 -19801858 - B4A SINE B4 -19 273 95 4 1597 327 25 0 0 chr5 132736202 132736242 -19801017 + (CA)n Simple_repeat Simple_repeat 1 40 0 4 1597 295 287 34 11 chr5 132736300 132736388 -19800871 + Lx8 LINE L1 7187 7276 -197 4 1597 525 303 73 3 chr5 132736422 132736623 -19800636 + B3A SINE B2 5 216 0 4 1597 412 326 159 9 chr5 132737011 132737293 -19799966 + MLT1A0 LTR MaLR 6 341 -33 4 1597 230 259 52 69 chr5 132737307 132737423 -19799836 - ID_B1 SINE B4 -6 218 105 4 1597 909 263 24 5 chr5 132737913 132738123 -19799136 + ID_B1 SINE B4 10 223 -1 4 1597 180 176 0 0 chr5 132738667 132738701 -19798558 + (CATA)n Simple_repeat Simple_repeat 3 36 0 4 1597 180 111 0 0 chr5 132738890 132738917 -19798342 + (CA)n Simple_repeat Simple_repeat 2 28 0 4 1597 304 291 33 33 chr5 132738949 132739070 -19798189 + B4A SINE B4 9 129 -163 4 1597 1470 220 177 82 chr5 132739130 132739571 -19797688 + MT2A LTR ERVL 1 488 -45 4 1597 230 0 33 0 chr5 132739571 132739601 -19797658 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 4 1597 1470 220 177 82 chr5 132739601 132739644 -19797615 + MT2A LTR ERVL 489 531 -2 4 1597 446 230 10 0 chr5 132740080 132740180 -19797079 + MER34A LTR ERV1 11 111 -460 4 1597 287 275 175 0 chr5 132740451 132740571 -19796688 - ID_B1 SINE B4 -2 222 82 4 1597 428 191 86 0 chr5 132740614 132740719 -19796540 + MER34A LTR ERV1 428 541 -1 4 1597 824 284 160 9 chr5 132741415 132741752 -19795507 - MTD LTR MaLR -14 405 18 4 1597 528 322 50 29 chr5 132742300 132742581 -19794678 + B4A SINE B4 2 288 -4 4 1597 201 39 0 0 chr5 132742623 132742649 -19794610 + (CA)n Simple_repeat Simple_repeat 2 27 0 4 1597 535 309 31 41 chr5 132742979 132743175 -19794084 - B3A SINE B2 -4 194 1 4 1597 580 256 16 67 chr5 132743434 132743627 -19793632 + B3A SINE B2 3 185 -13 4 1597 387 200 24 24 chr5 132744006 132744129 -19793130 + GA-rich Low_complexity Low_complexity 4 126 0 4 1597 591 289 26 97 chr5 132744872 132745098 -19792161 - ID_B1 SINE B4 -13 211 2 4 1597 575 221 70 45 chr5 132745112 132745268 -19791991 + L1M2 LINE L1 5328 5487 -825 4 1597 945 289 75 17 chr5 132745393 132745738 -19791521 - MTEa LTR MaLR -14 365 1 4 1597 216 333 87 19 chr5 132746240 132746344 -19790915 - MIRb SINE MIR -53 215 105 4 1597 574 307 0 29 chr5 132749073 132749281 -19787978 - ID_B1 SINE B4 -16 208 7 4 1597 2087 198 138 2 chr5 132750970 132751440 -19785819 - RMER1C Other Other -52 1290 757 4 1597 1337 164 0 22 chr5 132751582 132751812 -19785447 - URR1B DNA MER1_type 0 225 1 4 1597 623 293 27 36 chr5 132752358 132752581 -19784678 - B4 SINE B4 -18 274 54 4 1597 285 328 136 24 chr5 132753591 132753716 -19783543 + RSINE1 SINE B4 27 165 0 4 1597 533 325 18 0 chr5 132755303 132755472 -19781787 - B3A SINE B2 -26 172 1 4 1597 356 340 10 0 chr5 132756300 132756397 -19780862 + RSINE1 SINE B4 68 165 0 4 1597 25 51 0 0 chr5 132756407 132756446 -19780813 + AT_rich Low_complexity Low_complexity 1 39 0 4 1597 198 0 0 0 chr5 132757615 132757637 -19779622 + (TAA)n Simple_repeat Simple_repeat 2 23 0 4 1597 273 301 64 48 chr5 132757721 132757940 -19779319 + MTE2a LTR MaLR 18 239 -180 4 1597 195 42 0 0 chr5 132757966 132757990 -19779269 + (GGGAA)n Simple_repeat Simple_repeat 4 27 0 4 1597 346 223 199 25 chr5 132758011 132758172 -19779087 + MTE2a LTR MaLR 189 377 -2 4 1597 520 332 95 8 chr5 132758322 132758574 -19778685 - B4A SINE B4 -18 274 1 4 1597 655 348 105 33 chr5 132759560 132760133 -19777126 + MER45B DNA Tip100 18 631 -409 4 1597 313 172 47 0 chr5 132760251 132760315 -19776944 - MTE2a LTR MaLR 0 379 313 4 1597 1110 67 0 0 chr5 132760316 132760451 -19776808 + B1_Mus2 SINE Alu 1 135 -12 4 1597 216 0 0 0 chr5 132760451 132760475 -19776784 + (GAAA)n Simple_repeat Simple_repeat 1 24 0 4 1597 1080 136 0 0 chr5 132760477 132760653 -19776606 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 4 1597 198 0 0 0 chr5 132761172 132761194 -19776065 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1597 767 196 0 14 chr5 132761272 132761412 -19775847 - B1F2 SINE Alu -7 142 5 4 1597 23 0 0 0 chr5 132761933 132761956 -19775303 + AT_rich Low_complexity Low_complexity 1 23 0 4 1597 203 244 0 0 chr5 132762114 132762159 -19775100 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1597 324 70 0 0 chr5 132762159 132762202 -19775057 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1597 807 313 57 18 chr5 132762209 132762489 -19774770 + B4 SINE B4 2 292 0 4 1597 193 333 0 0 chr5 132763078 132763138 -19774121 + MIR SINE MIR 91 150 -58 4 1597 482 304 35 6 chr5 132763452 132763621 -19773638 - B3 SINE B2 -25 191 18 4 1597 621 297 57 11 chr5 132763650 132763827 -19773432 - ID_B1 SINE B4 -38 186 2 4 1597 780 59 0 0 chr5 132764083 132764185 -19773074 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 4 1597 325 244 13 0 chr5 132764276 132764354 -19772905 - ID_B1 SINE B4 0 224 146 4 1597 229 284 105 0 chr5 132764397 132764492 -19772767 + MER53 DNA hAT 25 129 -64 4 1597 276 330 64 0 chr5 132764573 132764602 -19772657 + B1F SINE Alu 24 139 -10 4 1597 385 288 0 0 chr5 132764602 132764682 -19772577 + ID_B1 SINE B4 135 214 -10 4 1597 350 42 21 0 chr5 132764682 132764730 -19772529 + (CAA)n Simple_repeat Simple_repeat 2 50 0 4 1597 385 262 190 15 chr5 132764735 132764916 -19772343 + B3A SINE B2 2 195 -3 4 1597 768 253 63 0 chr5 132764981 132765171 -19772088 - B3 SINE B2 -13 203 2 4 1597 462 275 185 11 chr5 132765505 132765689 -19771570 - B3 SINE B2 0 216 1 4 1597 437 287 35 49 chr5 132765878 132766021 -19771238 + RSINE1 SINE B4 4 144 -21 4 1597 21 0 0 0 chr5 132766033 132766054 -19771205 + AT_rich Low_complexity Low_complexity 1 21 0 4 1597 480 35 0 0 chr5 132766252 132766310 -19770949 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1597 252 367 0 10 chr5 132767409 132767508 -19769751 + GA-rich Low_complexity Low_complexity 1 98 0 4 1597 367 192 305 8 chr5 132767768 132767899 -19769360 + B3A SINE B2 1 170 -28 4 1597 200 157 19 19 chr5 132768629 132768681 -19768578 + A-rich Low_complexity Low_complexity 4 55 0 5 1597 263 164 16 0 chr5 132768691 132768752 -19768507 + (CAAA)n Simple_repeat Simple_repeat 1 62 0 5 1597 304 338 66 0 chr5 132768994 132769130 -19768129 + B3A SINE B2 15 159 -39 5 1597 423 52 0 0 chr5 132769134 132769192 -19768067 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1597 576 301 26 57 chr5 132769730 132769924 -19767335 + B3 SINE B2 2 189 -27 5 1597 204 326 0 33 chr5 132771585 132771660 -19765599 + GA-rich Low_complexity Low_complexity 2 73 0 5 1597 198 71 0 0 chr5 132771660 132771688 -19765571 + (CGGA)n Simple_repeat Simple_repeat 2 29 0 5 1597 204 326 0 33 chr5 132771688 132771704 -19765555 + polypurine Low_complexity Low_complexity 74 89 0 5 1597 879 197 75 0 chr5 132771946 132772134 -19765125 + B3 SINE B2 1 202 -14 5 1597 244 311 71 34 chr5 132772155 132772272 -19764987 - B3A SINE B2 -5 211 93 5 1597 285 299 0 61 chr5 132772333 132772415 -19764844 - B3A SINE B2 -120 78 2 5 1597 378 305 30 6 chr5 132773780 132773945 -19763314 + RMER15 LTR ERVL 336 504 -71 5 1597 279 328 122 2 chr5 132774684 132774857 -19762402 - MIRc SINE MIR -17 251 62 5 1597 433 268 0 59 chr5 132774982 132775117 -19762142 + B1_Mur1 SINE Alu 10 136 -13 5 1597 344 194 33 40 chr5 132775126 132775276 -19761983 + GA-rich Low_complexity Low_complexity 1 149 0 5 1597 551 298 6 18 chr5 132775347 132775518 -19761741 + ID_B1 SINE B4 1 169 -55 5 1598 564 134 0 0 chr5 132777113 132777210 -19760049 + (CA)n Simple_repeat Simple_repeat 2 98 0 5 1598 327 309 36 0 chr5 132777210 132777320 -19759939 - ID_B1 SINE B4 -33 191 78 5 1598 288 53 0 0 chr5 132777694 132777732 -19759527 + (TCTG)n Simple_repeat Simple_repeat 1 38 0 5 1598 446 157 10 0 chr5 132777757 132777859 -19759400 + (TG)n Simple_repeat Simple_repeat 2 104 0 5 1598 776 267 5 64 chr5 132778250 132778470 -19758789 + B4 SINE B4 33 239 -53 5 1598 213 149 45 0 chr5 132778514 132778581 -19758678 + GA-rich Low_complexity Low_complexity 1 70 0 5 1598 376 226 94 0 chr5 132779099 132779205 -19758054 + B1F SINE Alu 23 138 -11 5 1598 448 350 10 24 chr5 132779950 132780171 -19757088 + MTE2a LTR MaLR 3 194 -185 5 1598 514 271 53 0 chr5 132780601 132780752 -19756507 + MTE2a LTR MaLR 216 374 -5 5 1598 274 143 0 31 chr5 132781366 132781431 -19755828 + CT-rich Low_complexity Low_complexity 3 65 0 5 1598 593 246 180 0 chr5 132782326 132782509 -19754750 - ID_B1 SINE B4 -6 218 3 5 1598 490 248 15 8 chr5 132782733 132782867 -19754392 - ORR1E LTR MaLR -224 135 1 5 1598 2526 170 40 9 chr5 132784498 132784949 -19752310 + RMER4A LTR ERVK 1 465 -1 5 1598 195 255 0 0 chr5 132785012 132785059 -19752200 - L2a LINE L2 -5 3421 3375 5 1598 580 253 48 79 chr5 132785469 132785658 -19751601 - B3A SINE B2 -15 183 1 5 1598 289 292 116 71 chr5 132786010 132786064 -19751195 + RSINE1 SINE B4 2 59 -106 5 1598 207 0 0 0 chr5 132786064 132786087 -19751172 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1598 289 292 116 71 chr5 132786087 132786187 -19751072 + RSINE1 SINE B4 60 163 -2 5 1598 495 156 0 0 chr5 132786187 132786309 -19750950 + (CAGAGA)n Simple_repeat Simple_repeat 3 124 0 5 1598 416 262 179 16 chr5 132786459 132786600 -19750659 - B4A SINE B4 -51 241 80 5 1598 414 57 0 0 chr5 132786600 132786653 -19750606 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1598 416 262 179 16 chr5 132786653 132786701 -19750558 - B4A SINE B4 -213 79 23 5 1598 234 314 18 62 chr5 132787736 132787848 -19749411 + B1F1 SINE Alu 43 149 0 5 1598 463 306 87 5 chr5 132788307 132788491 -19748768 - ID_B1 SINE B4 -24 200 2 5 1598 412 345 12 0 chr5 132789219 132789384 -19747875 + ID_B1 SINE B4 28 194 -30 5 1598 180 0 0 0 chr5 132789517 132789537 -19747722 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 5 1598 464 311 20 7 chr5 132789732 132789884 -19747375 + B3A SINE B2 2 155 -43 5 1598 207 0 0 0 chr5 132789889 132789912 -19747347 + (CA)n Simple_repeat Simple_repeat 1 23 0 5 1598 1263 270 12 32 chr5 132790874 132791211 -19746048 + ORR1E LTR MaLR 3 351 -28 5 1598 276 53 0 0 chr5 132791229 132791267 -19745992 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 5 1598 980 37 7 7 chr5 132791296 132791431 -19745828 - B1_Mus1 SINE Alu 0 148 14 5 1598 363 119 0 0 chr5 132791934 132792001 -19745258 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1598 697 189 0 144 chr5 132792103 132792270 -19744989 + B1_Mur1 SINE Alu 1 143 -6 5 1598 691 234 34 7 chr5 132792293 132792439 -19744820 + B3A SINE B2 2 151 -47 5 1598 378 0 0 0 chr5 132792442 132792484 -19744775 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 5 1598 356 225 0 59 chr5 132793539 132793624 -19743635 + B1_Mur3 SINE Alu 1 80 -69 5 1598 675 293 32 36 chr5 132793633 132793884 -19743375 - B4 SINE B4 -42 250 1 5 1598 364 288 30 16 chr5 132794095 132794238 -19743021 + B1_Mur1 SINE Alu 1 149 -1 5 1598 393 231 92 25 chr5 132795523 132795643 -19741616 + MTE2a LTR MaLR 160 287 -92 5 1598 236 331 118 41 chr5 132796009 132796204 -19741055 + RMER15 LTR ERVL 349 558 -17 5 1598 1501 169 111 15 chr5 132796631 132796956 -19740303 + ORR1B1 LTR MaLR 39 394 0 5 1598 629 254 134 11 chr5 132797291 132797470 -19739789 + ID_B1 SINE B4 11 211 -13 5 1598 432 0 0 0 chr5 132797472 132797520 -19739739 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1598 487 276 36 24 chr5 132798406 132798559 -19738700 + ID_B1 SINE B4 70 220 -4 5 1598 509 313 47 74 chr5 132798577 132798874 -19738385 + B4A SINE B4 4 292 0 5 1598 188 171 0 0 chr5 132799269 132799304 -19737955 + L2a LINE L2 3371 3405 -21 5 1598 188 225 0 0 chr5 132799926 132799966 -19737293 + MIRc SINE MIR 226 265 -3 5 1598 325 290 30 0 chr5 132800250 132800350 -19736909 + ID_B1 SINE B4 3 105 -119 5 1598 266 276 113 44 chr5 132800795 132800954 -19736305 + MER5B DNA MER1_type 2 171 -7 5 1598 532 303 0 49 chr5 132801091 132801275 -19735984 + B3A SINE B2 2 176 -22 5 1598 956 124 9 21 chr5 132801365 132801704 -19735555 + GA-rich Low_complexity Low_complexity 1 334 0 5 1598 293 294 0 0 chr5 132802267 132802352 -19734907 + PB1D10 SINE Alu 25 109 -8 5 1598 237 288 125 9 chr5 132802852 132802964 -19734295 - MIR SINE MIR -61 201 77 5 1598 282 239 117 21 chr5 132803065 132803159 -19734100 + PB1D10 SINE Alu 15 117 0 5 1598 812 219 113 105 chr5 132803867 132804239 -19733020 - MTE2a LTR MaLR 0 379 5 5 1598 1835 167 96 33 chr5 132804301 132804697 -19732562 - MTC LTR MaLR 0 421 1 5 1598 363 23 0 0 chr5 132804996 132805040 -19732219 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1598 450 114 0 0 chr5 132805472 132805551 -19731708 + (TG)n Simple_repeat Simple_repeat 2 80 0 5 1598 547 325 0 19 chr5 132805561 132805721 -19731538 - B3A SINE B2 -41 157 1 5 1598 552 306 66 19 chr5 132807202 132807415 -19729844 + ID_B1 SINE B4 1 223 -1 5 1598 248 297 261 11 chr5 132809662 132809846 -19727413 - MIR SINE MIR 0 262 33 5 1598 918 237 10 0 chr5 132810033 132810227 -19727032 + B3 SINE B2 1 196 -20 5 1598 366 23 0 0 chr5 132810240 132810283 -19726976 + (TC)n Simple_repeat Simple_repeat 2 44 0 5 1598 196 229 21 0 chr5 132812710 132812758 -19724501 - MIRb SINE MIR -15 253 205 5 1598 1099 259 56 38 chr5 132813308 132813682 -19723577 + MTD LTR MaLR 10 405 -14 5 1598 678 320 65 22 chr5 132813682 132814104 -19723155 - L2a LINE L2 -285 3141 2706 5 1598 273 29 0 0 chr5 132814107 132814141 -19723118 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1598 797 255 145 4 chr5 132814338 132814586 -19722673 + B4 SINE B4 3 285 -7 5 1598 239 337 42 0 chr5 132815649 132815744 -19721515 + B4A SINE B4 182 280 -12 5 1598 21 36 0 0 chr5 132815884 132815912 -19721347 + AT_rich Low_complexity Low_complexity 1 28 0 5 1598 226 241 244 25 chr5 132816311 132816430 -19720829 - MTC LTR MaLR -12 407 263 5 1598 261 163 20 0 chr5 132816432 132816481 -19720778 + MERVL-int LTR ERVL 4454 4503 -982 5 1598 277 351 29 15 chr5 132816489 132816625 -19720634 - MTC LTR MaLR -161 260 123 5 1598 197 322 19 88 chr5 132817135 132817295 -19719964 - L2 LINE L2 -588 2831 2683 5 1598 274 254 22 0 chr5 132818115 132818204 -19719055 + PB1D10 SINE Alu 28 120 0 5 1598 338 272 71 8 chr5 132818426 132818552 -19718707 + MLT1F1 LTR MaLR 4 137 -432 5 1598 703 257 0 0 chr5 132818752 132818900 -19718359 + RSINE1 SINE B4 3 150 -15 5 1598 627 244 91 16 chr5 132819278 132819465 -19717794 + ID_B1 SINE B4 4 204 -20 5 1598 192 293 117 59 chr5 132819526 132819673 -19717586 + MIRc SINE MIR 31 181 -27 5 1598 1175 245 103 29 chr5 132820127 132820468 -19716791 - MTE2b LTR MaLR -13 366 1 5 1598 209 209 0 44 chr5 132821328 132821373 -19715886 - MER5A DNA MER1_type -145 44 2 5 1598 722 262 53 135 chr5 132821450 132821843 -19715416 - MTE2a LTR MaLR -14 365 5 5 1598 466 246 18 0 chr5 132821911 132822021 -19715238 - ID_B1 SINE B4 -100 124 13 5 1598 1054 96 0 0 chr5 132822290 132822425 -19714834 + B1_Mus1 SINE Alu 3 137 -11 5 1598 468 301 38 7 chr5 132822574 132822742 -19714517 - MTE2a LTR MaLR -8 388 195 5 1598 868 223 14 51 chr5 132823270 132823487 -19713772 + B3 SINE B2 1 209 -7 5 1598 663 307 28 0 chr5 132823903 132824079 -19713180 - B3A SINE B2 -16 182 2 5 1598 366 292 186 7 chr5 132824178 132824323 -19712936 + ID_B1 SINE B4 1 171 -53 5 1598 299 261 33 43 chr5 132824244 132824336 -19712923 + B1F2 SINE Alu 12 102 -47 5 1598 1414 244 92 5 chr5 132824439 132824809 -19712450 + MTD LTR MaLR 18 419 0 6 1598 360 297 25 8 chr5 132824817 132824936 -19712323 + B1_Mur2 SINE Alu 1 121 -28 6 1598 2365 253 20 12 chr5 132825105 132825662 -19711597 - Lx5 LINE L1 0 7050 6498 6 1598 204 320 50 10 chr5 132826640 132826741 -19710518 + L2a LINE L2 3303 3407 -19 6 1598 390 74 0 0 chr5 132826918 132826972 -19710287 + (CA)n Simple_repeat Simple_repeat 2 55 0 6 1598 236 283 0 115 chr5 132827307 132827411 -19709848 + RSINE1 SINE B4 17 108 -57 6 1598 419 257 114 7 chr5 132827517 132827666 -19709593 - ID_B1 SINE B4 0 224 60 6 1598 620 71 0 10 chr5 132827990 132828090 -19709169 + (GAAAA)n Simple_repeat Simple_repeat 4 102 0 6 1598 180 0 0 0 chr5 132828178 132828198 -19709061 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1598 413 291 0 80 chr5 132828215 132828353 -19708906 + B3 SINE B2 81 207 -9 6 1598 598 320 19 9 chr5 132829299 132829510 -19707749 + B4 SINE B4 50 262 -30 6 1598 614 288 59 52 chr5 132829897 132830186 -19707073 - B4 SINE B4 -1 291 1 6 1598 246 329 12 12 chr5 132830442 132830525 -19706734 + ID2 SINE ID 1 83 0 6 1598 261 0 0 0 chr5 132830592 132830621 -19706638 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1598 228 86 0 0 chr5 132830725 132830760 -19706499 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1598 700 154 7 75 chr5 132830799 132830946 -19706313 + B1_Mm SINE Alu 9 145 -2 6 1598 387 276 152 64 chr5 132831201 132831700 -19705559 - L1MA9 LINE L1 -155 6157 5615 6 1598 430 281 97 7 chr5 132832630 132832784 -19704475 - ID_B1 SINE B4 -3 221 54 6 1598 221 128 0 21 chr5 132833651 132833699 -19703560 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1598 686 243 7 0 chr5 132834539 132834679 -19702580 + B3 SINE B2 1 141 -75 6 1598 717 302 43 23 chr5 132834994 132835252 -19702007 - B4 SINE B4 -26 266 4 6 1598 5648 104 53 6 chr5 132835287 132836118 -19701141 - Lx LINE L1 -6 6648 5779 6 1598 198 171 0 0 chr5 132836257 132836298 -19700961 + CT-rich Low_complexity Low_complexity 4 44 0 6 1598 180 226 18 70 chr5 132837272 132837329 -19699930 - MER5B DNA MER1_type -10 168 115 6 1598 447 253 4 73 chr5 132837330 132837488 -19699771 + B3 SINE B2 3 146 -47 6 1598 1042 116 0 0 chr5 132838123 132838269 -19698990 + B1_Mus2 SINE Alu 1 146 -1 6 1598 676 311 46 46 chr5 132838384 132838647 -19698612 + B4A SINE B4 10 272 -20 6 1598 288 154 0 0 chr5 132838701 132838753 -19698506 + (CACG)n Simple_repeat Simple_repeat 3 54 0 6 1598 472 316 35 25 chr5 132839230 132839431 -19697828 + MTD LTR MaLR 3 205 -214 6 1598 5189 122 91 29 chr5 132839570 132840472 -19696787 + RMER17B LTR ERVK 1 958 0 6 1598 227 182 152 0 chr5 132841233 132841299 -19695960 + Lx3_Mus LINE L1 6517 6592 -417 6 1598 206 337 0 53 chr5 132841955 132842049 -19695210 + CT-rich Low_complexity Low_complexity 2 90 0 6 1598 874 236 41 16 chr5 132842065 132842368 -19694891 - MTD LTR MaLR -1 373 57 6 1598 255 246 49 0 chr5 132842403 132842464 -19694795 + ORR1D2 LTR MaLR 26 89 -270 6 1598 675 207 292 17 chr5 132842555 132842791 -19694468 + ORR1D2 LTR MaLR 70 370 0 6 1598 422 261 25 50 chr5 132843428 132843549 -19693710 + ID_B1 SINE B4 94 211 -13 6 1598 346 217 81 45 chr5 132843713 132843824 -19693435 - MER5B DNA MER1_type -1 177 63 6 1598 21 0 0 0 chr5 132845034 132845055 -19692204 + AT_rich Low_complexity Low_complexity 1 21 0 6 1598 351 0 0 0 chr5 132845289 132845328 -19691931 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 6 1598 350 305 67 79 chr5 132845894 132846058 -19691201 - MTE2a LTR MaLR -89 290 129 6 1598 378 42 0 0 chr5 132846683 132846731 -19690528 + (TG)n Simple_repeat Simple_repeat 1 48 0 6 1598 22 0 0 0 chr5 132847057 132847079 -19690180 + AT_rich Low_complexity Low_complexity 1 22 0 6 1598 234 0 0 0 chr5 132847294 132847320 -19689939 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 6 1598 399 273 87 70 chr5 132848420 132848707 -19688552 - Lx7 LINE L1 -2 7471 7167 6 1598 239 82 0 58 chr5 132850115 132850167 -19687092 + (T)n Simple_repeat Simple_repeat 1 49 0 6 1598 180 0 0 0 chr5 132850168 132850188 -19687071 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1598 258 32 0 0 chr5 132850260 132850291 -19686968 + (CA)n Simple_repeat Simple_repeat 2 32 0 6 1598 226 250 42 0 chr5 132851016 132851088 -19686171 + ID4_ SINE ID 1 75 -8 6 1598 261 217 74 32 chr5 132851500 132851595 -19685664 + PB1D10 SINE Alu 18 116 -1 6 1598 27 29 0 0 chr5 132852450 132852484 -19684775 + AT_rich Low_complexity Low_complexity 1 34 0 6 1598 543 293 47 20 chr5 132852658 132852808 -19684451 - B3A SINE B2 -18 180 27 6 1598 741 125 0 0 chr5 132852843 132852955 -19684304 - B1_Mur4 SINE Alu -38 112 1 6 1598 275 105 0 0 chr5 132852955 132852993 -19684266 - B3A SINE B2 -157 41 4 6 1598 278 261 81 68 chr5 132853335 132853381 -19683878 - B2_Mm2 SINE B2 -10 185 143 6 1598 261 57 0 0 chr5 132853381 132853416 -19683843 + (TCTG)n Simple_repeat Simple_repeat 4 38 0 6 1598 433 222 5 44 chr5 132853416 132853517 -19683742 - B3 SINE B2 -53 142 36 6 1598 737 302 9 9 chr5 132854093 132854307 -19682952 - B3 SINE B2 -2 214 1 6 1598 1468 253 128 34 chr5 132854831 132855345 -19681914 + Lx8 LINE L1 6879 7463 -10 6 1598 1145 87 6 0 chr5 132855345 132855517 -19681742 + (TA)n Simple_repeat Simple_repeat 1 173 0 6 1598 629 219 126 37 chr5 132855528 132855718 -19681541 + B3 SINE B2 1 207 -9 6 1598 252 0 0 0 chr5 132857098 132857126 -19680133 + (CA)n Simple_repeat Simple_repeat 2 29 0 6 1598 287 297 11 32 chr5 132858248 132858342 -19678917 + G-rich Low_complexity Low_complexity 2 93 0 6 1598 343 248 61 9 chr5 132858620 132858734 -19678525 - L1MDb LINE L1 -5318 1091 972 6 1598 331 255 37 47 chr5 132859642 132859749 -19677510 + PB1D10 SINE Alu 3 108 -9 6 1598 434 303 37 22 chr5 132859755 132859890 -19677369 + RSINE1 SINE B4 2 138 -27 6 1598 181 361 50 28 chr5 132860066 132860248 -19677011 - MIRb SINE MIR -48 220 35 6 1598 508 282 85 37 chr5 132860263 132860451 -19676808 - B3A SINE B2 -1 197 1 6 1598 193 167 37 0 chr5 132861223 132861277 -19675982 + GA-rich Low_complexity Low_complexity 5 60 0 6 1598 252 317 0 0 chr5 132861812 132861872 -19675387 + tRNA-Ala-GCY_ tRNA tRNA 2 61 -14 6 1598 180 0 0 0 chr5 132861877 132861897 -19675362 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1598 235 352 0 11 chr5 132861930 132862022 -19675237 + GA-rich Low_complexity Low_complexity 6 96 0 6 1598 468 91 0 0 chr5 132862370 132862436 -19674823 + (TTA)n Simple_repeat Simple_repeat 2 67 0 6 1598 271 154 0 55 chr5 132863626 132863695 -19673564 - B1_Mur1 SINE Alu -1 148 52 6 1598 449 281 45 20 chr5 132863706 132863906 -19673353 + L1MB2 LINE L1 5888 6092 -79 6 1598 270 0 0 0 chr5 132863939 132863969 -19673290 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1598 293 318 91 0 chr5 132864029 132864139 -19673120 + Lx8 LINE L1 7047 7166 -307 6 1598 734 314 28 45 chr5 132865348 132865635 -19671624 + B4A SINE B4 3 284 -8 6 1598 213 39 0 0 chr5 132865645 132865671 -19671588 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 6 1598 255 393 0 17 chr5 132865717 132865836 -19671423 - PB1 SINE Alu -10 117 1 6 1598 25 31 0 0 chr5 132866000 132866032 -19671227 + AT_rich Low_complexity Low_complexity 1 32 0 6 1598 232 234 0 0 chr5 132866141 132866188 -19671071 + L1MA5 LINE L1 5696 5742 -558 6 1598 270 0 0 0 chr5 132866677 132866707 -19670552 + (CATA)n Simple_repeat Simple_repeat 1 30 0 6 1598 1033 297 92 11 chr5 132866736 132867182 -19670077 + L1MA5 LINE L1 5815 6296 -4 6 1598 526 297 6 28 chr5 132869105 132869285 -19667974 + B3A SINE B2 5 180 -18 6 1598 6407 84 66 0 chr5 132869427 132870316 -19666943 + Lx3_Mus LINE L1 6062 7009 0 6 1598 200 182 0 0 chr5 132870325 132870358 -19666901 + GA-rich Low_complexity Low_complexity 2 34 0 6 1598 618 96 0 0 chr5 132871340 132871444 -19665815 + (CAG)n Simple_repeat Simple_repeat 2 105 0 6 1598 392 246 16 41 chr5 132872508 132872631 -19664628 + ID_B1 SINE B4 102 221 -3 6 1598 545 247 81 57 chr5 132873033 132873243 -19664016 - ID_B1 SINE B4 -7 217 3 6 1598 229 271 33 17 chr5 132874078 132874138 -19663121 - URR1B DNA MER1_type -136 89 29 6 1598 521 167 0 10 chr5 132874347 132874397 -19662862 + polypurine Low_complexity Low_complexity 2 51 0 6 1598 1116 133 0 0 chr5 132874397 132874577 -19662682 + (GGA)n Simple_repeat Simple_repeat 1 180 0 6 1598 521 167 0 10 chr5 132874577 132874629 -19662630 + polypurine Low_complexity Low_complexity 52 103 0 6 1598 210 37 0 0 chr5 132874627 132874654 -19662605 + (CAG)n Simple_repeat Simple_repeat 2 28 0 6 1598 232 349 50 22 chr5 132875249 132875428 -19661831 + MIRb SINE MIR 63 246 -22 6 1598 637 335 0 40 chr5 132877919 132878146 -19659113 + MER2 DNA MER2_type 116 333 -12 6 1598 337 200 46 0 chr5 132878615 132878680 -19658579 + B3A SINE B2 1 68 -130 6 1598 938 158 194 33 chr5 132878770 132879012 -19658247 + RMER10B LTR ERVL 5 285 -113 6 1598 181 292 0 77 chr5 132879019 132879097 -19658162 + MIRm SINE MIR 88 159 -117 6 1598 381 266 32 64 chr5 132879872 132880075 -19657184 + L1MB8 LINE L1 5932 6139 -45 6 1598 430 211 10 10 chr5 132880240 132880336 -19656923 - B1F SINE Alu -7 142 47 6 1598 1192 62 0 0 chr5 132881462 132881608 -19655651 + B1_Mus2 SINE Alu 2 147 0 6 1598 246 32 0 0 chr5 132881641 132881672 -19655587 + (CAA)n Simple_repeat Simple_repeat 1 31 0 6 1598 261 263 26 29 chr5 132881756 132881852 -19655407 + B1_Mur2 SINE Alu 52 146 -3 6 1598 757 264 0 15 chr5 132881854 132882054 -19655205 + B3A SINE B2 2 198 0 7 1598 415 176 0 0 chr5 132882093 132882161 -19655098 + B1_Mur1 SINE Alu 69 136 -13 7 1598 533 239 218 0 chr5 132882189 132882331 -19654928 + B3A SINE B2 1 173 -25 7 1598 192 77 0 0 chr5 132882334 132882360 -19654899 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1598 228 342 33 50 chr5 132882868 132883108 -19654151 + L1MEe LINE L1 201 436 -4418 7 1598 3128 179 155 1 chr5 132883134 132883832 -19653427 + Lx9 LINE L1 6839 7643 -1 7 1598 1588 162 98 53 chr5 132884045 132884422 -19652837 - RMER10B LTR ERVL 0 398 5 7 1598 21 0 0 0 chr5 132885626 132885647 -19651612 + AT_rich Low_complexity Low_complexity 1 21 0 7 1598 23 0 0 0 chr5 132887069 132887092 -19650167 + AT_rich Low_complexity Low_complexity 1 23 0 7 1598 629 301 132 12 chr5 132887094 132887343 -19649916 + B4A SINE B4 1 279 -13 7 1598 1128 87 0 0 chr5 132887356 132887668 -19649591 + (CA)n Simple_repeat Simple_repeat 1 312 0 7 1598 204 321 16 21 chr5 132888323 132888438 -19648821 + MIR SINE MIR 61 177 -31 7 1598 754 230 90 6 chr5 132888476 132888642 -19648617 - B3A SINE B2 -17 181 2 7 1598 231 264 59 51 chr5 132889969 132890057 -19647202 - L2a LINE L2 -33 3393 3264 7 1598 240 35 0 0 chr5 132891196 132891225 -19646034 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1598 260 305 19 38 chr5 132891421 132891581 -19645678 + (TAGA)n Simple_repeat Simple_repeat 1 157 0 7 1598 255 31 0 0 chr5 132892511 132892543 -19644716 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1598 237 271 108 59 chr5 132892654 132892756 -19644503 - B1F SINE Alu -41 108 2 7 1598 205 298 123 108 chr5 132893831 132894034 -19643225 - MIRm SINE MIR -25 251 46 7 1598 435 281 68 7 chr5 132894617 132894764 -19642495 - RMER15 LTR ERVL -77 498 343 7 1598 27 29 0 0 chr5 132895641 132895675 -19641584 + AT_rich Low_complexity Low_complexity 1 34 0 7 1598 451 205 182 32 chr5 132896005 132896131 -19641128 - B1F1 SINE Alu 0 149 5 7 1598 23 0 0 0 chr5 132896915 132896938 -19640321 + AT_rich Low_complexity Low_complexity 1 23 0 7 1598 727 159 63 0 chr5 132897125 132897251 -19640008 + B1_Mur1 SINE Alu 2 135 -14 7 1598 367 247 41 10 chr5 132897757 132897855 -19639404 - PB1D10 SINE Alu -8 109 9 7 1598 552 68 0 0 chr5 132898024 132898097 -19639162 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1598 457 305 89 63 chr5 132898116 132898623 -19638636 + L1M5 LINE L1 4687 5206 -940 7 1598 537 202 18 35 chr5 132898663 132898776 -19638483 + PB1D7 SINE Alu 7 117 -3 7 1598 649 270 134 57 chr5 132898785 132899240 -19638019 + L1M5 LINE L1 5327 5816 -348 7 1598 492 193 0 0 chr5 132899276 132899385 -19637874 + (TG)n Simple_repeat Simple_repeat 2 110 0 7 1598 502 261 152 98 chr5 132899385 132899776 -19637483 - MTC LTR MaLR -17 404 6 7 1598 489 371 105 30 chr5 132900936 132901136 -19636123 - ID_B1 SINE B4 -8 216 2 7 1598 938 243 14 36 chr5 132901826 132902048 -19635211 + ORR1E LTR MaLR 6 222 -137 7 1598 242 305 217 14 chr5 132902631 132902774 -19634485 - MIR SINE MIR -59 203 32 7 1598 224 297 54 21 chr5 132903389 132903400 -19633859 - BC1_Mm scRNA scRNA -56 96 1 7 1598 304 253 61 37 chr5 132903400 132903482 -19633777 - ID SINE ID -140 84 1 7 1598 450 335 30 2 chr5 132903521 132903720 -19633539 + Lx9 LINE L1 7111 7441 -203 7 1598 23 0 0 0 chr5 132903753 132903776 -19633483 + AT_rich Low_complexity Low_complexity 1 23 0 7 1598 365 244 93 0 chr5 132904907 132904993 -19632266 + PB1D10 SINE Alu 17 110 -7 7 1598 762 177 202 11 chr5 132905800 132905988 -19631271 + URR1B DNA MER1_type 1 224 -1 7 1598 558 43 0 0 chr5 132906403 132906472 -19630787 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1598 772 257 20 20 chr5 132906615 132906810 -19630449 - B3A SINE B2 -2 196 2 7 1599 727 282 83 10 chr5 132907108 132907409 -19629850 + L1MD LINE L1 4851 5173 -973 7 1599 251 302 20 20 chr5 132907508 132907606 -19629653 + L1M4 LINE L1 5160 5257 -889 7 1599 739 277 0 43 chr5 132907611 132907822 -19629437 + B3 SINE B2 2 203 -13 7 1599 322 241 51 0 chr5 132907825 132907904 -19629355 + L1M4 LINE L1 5326 5408 -771 7 1599 415 186 136 10 chr5 132907963 132908066 -19629193 - B1_Mus2 SINE Alu -8 139 24 7 1599 522 306 41 45 chr5 132908069 132908336 -19628923 + L1M4 LINE L1 5456 5721 -458 7 1599 260 270 27 0 chr5 132908357 132908431 -19628828 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 7 1599 805 294 6 0 chr5 132908797 132908977 -19628282 + B3A SINE B2 2 182 -16 7 1599 2316 129 33 11 chr5 132908987 132909346 -19627913 - ORR1B2 LTR MaLR 0 367 1 7 1599 680 189 39 16 chr5 132909378 132909507 -19627752 + B1_Mur2 SINE Alu 5 136 -13 7 1599 22 0 0 0 chr5 132909530 132909552 -19627707 + AT_rich Low_complexity Low_complexity 1 22 0 7 1599 226 278 87 94 chr5 132909705 132909832 -19627427 + ORR1D-int LTR MaLR 1017 1142 -228 7 1599 21 0 0 0 chr5 132910301 132910322 -19626937 + AT_rich Low_complexity Low_complexity 1 21 0 7 1599 2176 152 61 3 chr5 132912295 132912657 -19624602 - ORR1B1 LTR MaLR -9 385 3 7 1599 237 65 0 0 chr5 132913288 132913319 -19623940 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1599 417 39 0 0 chr5 132913319 132913370 -19623889 + (TA)n Simple_repeat Simple_repeat 1 51 0 7 1599 1372 225 130 17 chr5 132913438 132913799 -19623460 + MTD LTR MaLR 18 419 0 7 1599 415 288 9 0 chr5 132914878 132914989 -19622270 + ZP3AR Satellite Satellite 47 158 -54 7 1599 961 255 24 0 chr5 132915126 132915334 -19621925 - B3 SINE B2 -3 213 1 7 1599 596 292 18 18 chr5 132915750 132915914 -19621345 + RSINE1 SINE B4 2 165 0 7 1599 343 266 45 8 chr5 132915977 132916104 -19621155 + B1F SINE Alu 9 149 0 7 1599 330 293 37 74 chr5 132917080 132917242 -19620017 + MLT1B LTR MaLR 4 159 -231 7 1599 321 47 0 0 chr5 132917507 132917550 -19619709 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1599 287 25 25 0 chr5 132917551 132917591 -19619668 + (TA)n Simple_repeat Simple_repeat 2 42 0 7 1599 435 267 59 0 chr5 132918072 132918173 -19619086 - ID_B1 SINE B4 -106 118 12 7 1599 248 236 26 77 chr5 132919445 132919523 -19617736 - MER5A1 DNA MER1_type -69 97 24 7 1599 275 300 0 12 chr5 132920061 132920142 -19617117 + ID4_ SINE ID 3 82 -1 7 1599 268 302 67 45 chr5 132920276 132920424 -19616835 + MIRb SINE MIR 86 251 -17 7 1599 460 315 66 35 chr5 132920974 132921201 -19616058 - MIRb SINE MIR -8 260 27 7 1599 434 284 0 0 chr5 132921774 132921855 -19615404 + ID4_ SINE ID 1 81 -2 7 1599 753 271 119 37 chr5 132921871 132922139 -19615120 + B4 SINE B4 3 292 0 7 1599 356 392 51 24 chr5 132922254 132922664 -19614595 + L1MC LINE L1 5303 5723 -2159 7 1599 330 26 0 0 chr5 132922718 132922757 -19614502 + (A)n Simple_repeat Simple_repeat 1 39 0 7 1599 364 282 35 12 chr5 132923144 132923230 -19614029 + B3A SINE B2 1 88 -110 7 1599 510 61 0 0 chr5 132923290 132923356 -19613903 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 1599 3730 23 0 0 chr5 132923369 132923763 -19613496 - MTA_Mm LTR MaLR -2 394 1 7 1599 701 108 0 0 chr5 132923763 132923865 -19613394 + B1_Mus2 SINE Alu 46 147 0 7 1599 37 0 0 0 chr5 132923865 132923902 -19613357 + AT_rich Low_complexity Low_complexity 1 37 0 7 1599 408 240 59 52 chr5 132924053 132924072 -19613187 - B1F SINE Alu -12 137 4 7 1599 495 221 35 9 chr5 132924072 132924186 -19613073 - ID_B1 SINE B4 -23 201 85 7 1599 261 0 0 0 chr5 132924855 132924884 -19612375 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1599 540 279 65 153 chr5 132925164 132925742 -19611517 + RMER20B LTR ERVK 30 601 -259 7 1599 239 307 0 83 chr5 132926007 132926103 -19611156 + MTE2b LTR MaLR 238 325 -54 7 1599 1000 222 45 36 chr5 132926192 132926412 -19610847 + ID_B1 SINE B4 3 224 0 7 1599 187 316 28 101 chr5 132926534 132926643 -19610616 + L2 LINE L2 21 121 -3298 7 1599 244 339 104 0 chr5 132927373 132927488 -19609771 + MER5A DNA MER1_type 3 129 -60 7 1599 745 258 14 72 chr5 132927504 132927713 -19609546 - B3A SINE B2 -1 197 1 7 1599 438 20 0 0 chr5 132927774 132927825 -19609434 + (CA)n Simple_repeat Simple_repeat 2 52 0 7 1599 301 268 0 14 chr5 132928471 132928543 -19608716 + ID4 SINE ID 3 73 -10 7 1599 3887 63 6 8 chr5 132929432 132929683 -19607576 + L1Md_F2 LINE L1 6098 6346 -236 7 1599 315 0 0 0 chr5 132929683 132929718 -19607541 + (CACCC)n Simple_repeat Simple_repeat 2 36 0 7 1599 3887 63 6 8 chr5 132929718 132929944 -19607315 + L1Md_F2 LINE L1 6347 6573 -9 7 1599 712 244 65 22 chr5 132929944 132930117 -19607142 + B3 SINE B2 34 216 0 7 1599 181 284 0 26 chr5 132930644 132930720 -19606539 + MER5B DNA MER1_type 1 74 -104 7 1599 339 25 0 0 chr5 132930839 132930879 -19606380 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1599 49 0 0 0 chr5 132931671 132931720 -19605539 + AT_rich Low_complexity Low_complexity 1 49 0 7 1599 273 278 0 53 chr5 132932806 132932882 -19604377 - L2a LINE L2 -17 3409 3338 7 1599 304 264 0 40 chr5 132933718 132933793 -19603466 - LFSINE_Vert SINE SINE -296 163 92 7 1599 491 354 58 69 chr5 132934332 132934914 -19602345 + Charlie20a DNA Charlie 110 685 -122 7 1599 293 234 0 111 chr5 132935256 132935328 -19601931 - RSINE1 SINE B4 0 165 102 7 1599 5031 53 10 8 chr5 132935873 132936478 -19600781 + L1_Mus2 LINE L1 5946 6551 -15 7 1599 551 175 0 17 chr5 132936480 132936535 -19600724 + polypurine Low_complexity Low_complexity 3 57 0 7 1599 1416 22 0 16 chr5 132936535 132936718 -19600541 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 8 1599 551 175 0 17 chr5 132936718 132936778 -19600481 + polypurine Low_complexity Low_complexity 58 116 0 8 1599 439 220 92 0 chr5 132936894 132937003 -19600256 + B1_Mur1 SINE Alu 25 143 -6 8 1599 267 282 14 14 chr5 132937229 132937301 -19599958 - B4A SINE B4 -220 72 1 8 1599 277 325 13 0 chr5 132937645 132937722 -19599537 + ID2 SINE ID 4 81 -2 8 1599 828 137 0 0 chr5 132937738 132937877 -19599382 + (GAA)n Simple_repeat Simple_repeat 2 140 0 8 1599 23 0 0 0 chr5 132938313 132938336 -19598923 + AT_rich Low_complexity Low_complexity 1 23 0 8 1599 430 275 128 19 chr5 132940020 132940320 -19596939 + L1MB4 LINE L1 5504 5833 -467 8 1599 339 222 67 0 chr5 132940449 132940539 -19596720 + L1MB4 LINE L1 6083 6178 -2 8 1599 347 0 0 23 chr5 132940567 132940611 -19596648 + (TTTTG)n Simple_repeat Simple_repeat 1 43 0 8 1599 947 267 34 79 chr5 132940615 132940969 -19596290 - MTE2a LTR MaLR -41 338 1 8 1599 379 292 131 28 chr5 132941429 132941605 -19595654 + B3A SINE B2 3 196 -2 8 1599 650 271 19 6 chr5 132941724 132941884 -19595375 + RSINE1 SINE B4 3 164 -1 8 1599 193 271 211 29 chr5 132942196 132942367 -19594892 - MIR SINE MIR -50 212 11 8 1599 216 97 0 0 chr5 132943656 132943687 -19593572 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 8 1599 770 264 50 131 chr5 132944093 132944489 -19592770 + MTE2a LTR MaLR 2 365 -14 8 1599 1138 272 105 8 chr5 132944753 132945105 -19592154 + MTD LTR MaLR 20 405 -14 8 1599 324 280 48 39 chr5 132945420 132945524 -19591735 - PB1D10 SINE Alu -12 105 1 8 1599 436 313 39 39 chr5 132946436 132946592 -19590667 + B3A SINE B2 1 156 -42 8 1599 252 184 0 0 chr5 132946688 132946737 -19590522 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1599 1594 279 41 19 chr5 132947266 132947752 -19589507 + Lx8 LINE L1 6977 7473 0 8 1599 239 379 25 12 chr5 132949082 132949245 -19588014 + L4 LINE RTE 1369 1533 -496 8 1599 526 240 49 16 chr5 132949506 132949629 -19587630 - B1F SINE Alu -21 128 2 8 1599 1167 48 0 20 chr5 132950120 132950270 -19586989 + B1_Mm SINE Alu 1 147 0 8 1599 1109 163 58 10 chr5 132953677 132953882 -19583377 + B3 SINE B2 2 216 0 8 1599 451 246 50 8 chr5 132954012 132954131 -19583128 + B3 SINE B2 7 130 -86 8 1599 296 221 0 23 chr5 132954320 132954408 -19582851 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 8 1599 963 283 34 15 chr5 132954432 132954694 -19582565 + B4 SINE B4 1 267 -25 8 1599 342 0 0 0 chr5 132954695 132954733 -19582526 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1599 315 0 0 0 chr5 132954733 132954767 -19582492 + (GA)n Simple_repeat Simple_repeat 1 35 0 8 1599 216 0 0 0 chr5 132954940 132954964 -19582295 + (A)n Simple_repeat Simple_repeat 1 24 0 8 1599 21 0 0 0 chr5 132957885 132957906 -19579353 + AT_rich Low_complexity Low_complexity 1 21 0 8 1599 389 298 73 85 chr5 132957982 132958147 -19579112 - RSINE1 SINE B4 0 165 3 8 1599 298 303 171 6 chr5 132958476 132958652 -19578607 + MER20 DNA MER1_type 1 205 -14 8 1599 412 346 13 7 chr5 132958995 132959149 -19578110 + RSINE1 SINE B4 9 163 -2 8 1599 25 51 0 0 chr5 132959149 132959188 -19578071 + AT_rich Low_complexity Low_complexity 1 39 0 8 1599 565 271 33 7 chr5 132959737 132959889 -19577370 + RSINE1 SINE B4 2 157 -8 8 1599 693 262 16 16 chr5 132960640 132960834 -19576425 + ID_B1 SINE B4 2 195 -29 8 1599 417 240 113 30 chr5 132960846 132960979 -19576280 - Lx8 LINE L1 -327 7146 7003 8 1599 801 127 0 0 chr5 132961022 132961188 -19576071 + (GA)n Simple_repeat Simple_repeat 1 166 0 8 1599 186 103 0 0 chr5 132961198 132961227 -19576032 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1599 1174 271 27 15 chr5 132961463 132961797 -19575462 - MER58B DNA MER1_type -1 340 3 8 1599 459 244 138 56 chr5 132961853 132962122 -19575137 + B4A SINE B4 2 292 0 8 1599 682 281 62 5 chr5 132963504 132963715 -19573544 - ID_B1 SINE B4 0 224 2 8 1599 1296 7 0 0 chr5 132964142 132964292 -19572967 + L1Md_A LINE L1 6433 6582 0 8 1599 23 0 0 0 chr5 132964292 132964315 -19572944 + AT_rich Low_complexity Low_complexity 1 23 0 8 1599 515 280 88 86 chr5 132964453 132964930 -19572329 + RLTR11A2 LTR ERVK 1 478 -49 8 1599 390 309 0 8 chr5 132965019 132965146 -19572113 - ID_B1 SINE B4 -12 212 87 8 1599 505 284 20 26 chr5 132965500 132965652 -19571607 - MER5A DNA MER1_type -38 151 1 8 1599 435 294 48 48 chr5 132966414 132966621 -19570638 + MIR SINE MIR 40 246 -16 8 1599 496 289 24 54 chr5 132966818 132966986 -19570273 + RSINE1 SINE B4 3 165 0 8 1599 470 257 196 7 chr5 132967000 132967153 -19570106 - B3A SINE B2 -15 183 2 8 1599 637 253 13 7 chr5 132968103 132968242 -19569017 + RSINE1 SINE B4 2 142 -23 8 1599 252 0 0 0 chr5 132968242 132968270 -19568989 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1599 637 253 13 7 chr5 132968270 132968285 -19568974 + RSINE1 SINE B4 143 157 -8 8 1599 1392 33 68 53 chr5 132968330 132968500 -19568759 + B2_Mm1a SINE B2 1 160 -33 8 1599 315 0 0 0 chr5 132968500 132968535 -19568724 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 8 1599 1392 33 68 53 chr5 132968535 132968554 -19568705 + B2_Mm1a SINE B2 161 192 -1 8 1599 733 220 148 0 chr5 132968568 132968750 -19568509 + ID_B1 SINE B4 2 210 -14 8 1599 710 284 10 0 chr5 132969801 132970005 -19567254 + ID_B1 SINE B4 4 209 -15 8 1599 189 107 0 0 chr5 132970953 132970981 -19566278 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 8 1599 35 24 0 0 chr5 132971054 132971096 -19566163 + AT_rich Low_complexity Low_complexity 1 42 0 8 1599 254 303 144 11 chr5 132971862 132972049 -19565210 - RMER15 LTR ERVL -17 558 347 8 1599 249 264 0 0 chr5 132972320 132972373 -19564886 + MER45B DNA Tip100 61 113 -927 8 1599 2126 157 42 32 chr5 132972457 132972866 -19564393 - MTC LTR MaLR -8 413 1 8 1599 318 143 0 0 chr5 132973268 132973331 -19563928 + (GA)n Simple_repeat Simple_repeat 2 64 0 8 1599 515 314 47 19 chr5 132974482 132974696 -19562563 + RMER15 LTR ERVL 356 575 0 8 1599 1039 280 89 11 chr5 132974757 132975115 -19562144 - MTD LTR MaLR -33 386 1 8 1599 372 284 117 36 chr5 132975251 132975474 -19561785 + MLT1C LTR MaLR 227 467 0 8 1599 318 304 79 16 chr5 132975508 132975635 -19561624 - B1F1 SINE Alu -3 146 12 8 1599 198 0 0 0 chr5 132975727 132975749 -19561510 + (A)n Simple_repeat Simple_repeat 1 22 0 8 1599 311 281 53 0 chr5 132976043 132976157 -19561102 - B1F1 SINE Alu -7 142 23 8 1599 342 0 0 0 chr5 132977317 132977355 -19559904 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1599 562 279 56 25 chr5 132978051 132978213 -19559046 + B3A SINE B2 2 168 -30 8 1599 1022 253 33 81 chr5 132978627 132979007 -19558252 - MLT1A LTR MaLR -14 453 1 8 1599 534 243 29 76 chr5 132979414 132979586 -19557673 - B3A SINE B2 0 216 28 8 1599 312 253 11 46 chr5 132980390 132980477 -19556782 - BC1_Mm scRNA scRNA -67 85 2 8 1599 675 247 100 62 chr5 132980768 132981069 -19556190 - MTD LTR MaLR -15 404 113 8 1599 681 13 0 0 chr5 132981069 132981147 -19556112 + (GAAAA)n Simple_repeat Simple_repeat 3 80 0 8 1599 675 251 119 81 chr5 132981147 132981246 -19556013 - MTD LTR MaLR -307 112 6 8 1599 306 286 55 45 chr5 132981313 132981336 -19555923 + B4 SINE B4 69 92 -200 8 1599 456 231 22 0 chr5 132981336 132981427 -19555832 + B1_Mur2 SINE Alu 2 94 -55 8 1599 228 246 16 0 chr5 132981473 132981534 -19555725 + L2c LINE L2 3239 3300 -87 8 1599 312 273 0 0 chr5 132981608 132981707 -19555552 + (TA)n Simple_repeat Simple_repeat 1 99 0 8 1599 213 39 0 0 chr5 132982316 132982342 -19554917 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 8 1599 209 269 39 0 chr5 132984224 132984276 -19552983 + MIR SINE MIR 100 153 -55 8 1599 207 0 0 0 chr5 132984715 132984738 -19552521 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8 1599 516 295 31 19 chr5 132984805 132984964 -19552295 + ID_B1 SINE B4 61 221 -3 8 1599 276 30 0 0 chr5 132984969 132985002 -19552257 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 8 1599 186 43 0 0 chr5 132985075 132985098 -19552161 + (A)n Simple_repeat Simple_repeat 1 23 0 8 1599 299 253 198 8 chr5 132986085 132986216 -19551043 - RSINE1 SINE B4 -1 164 2 8 1599 1587 219 72 18 chr5 132986483 132986873 -19550386 - MTD LTR MaLR -8 411 1 8 1599 324 0 0 0 chr5 132987545 132987581 -19549678 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1599 25 31 0 0 chr5 132988028 132988060 -19549199 + AT_rich Low_complexity Low_complexity 1 32 0 8 1599 909 133 0 20 chr5 132988245 132988398 -19548861 + B1_Mur4 SINE Alu 1 150 0 8 1599 300 253 25 25 chr5 132988599 132988680 -19548579 + RSINE1 SINE B4 77 157 -8 8 1599 336 173 91 19 chr5 132989268 132989386 -19547873 - Charlie4z DNA MER1_type -6 161 29 8 1599 192 328 56 24 chr5 132989574 132989699 -19547560 - MER5A DNA MER1_type 0 189 61 8 1599 704 286 122 39 chr5 132989712 132989967 -19547292 - B4A SINE B4 -11 281 6 8 1599 370 188 19 47 chr5 132990482 132990588 -19546671 + B1F2 SINE Alu 34 136 -13 8 1599 347 255 96 0 chr5 132990769 132990863 -19546396 + PB1 SINE Alu 19 121 -6 8 1599 245 161 17 35 chr5 132990927 132990985 -19546274 + CT-rich Low_complexity Low_complexity 4 60 0 8 1599 401 284 8 25 chr5 132991128 132991247 -19546012 + PB1D10 SINE Alu 1 117 0 8 1599 252 100 140 0 chr5 132991854 132991904 -19545355 + B3 SINE B2 84 140 -76 8 1599 238 271 239 17 chr5 132992050 132992230 -19545029 - MIRb SINE MIR 0 262 43 9 1599 271 329 0 0 chr5 132992325 132992395 -19544864 - B1_Mur1 SINE Alu -7 142 73 9 1599 340 250 105 9 chr5 132992618 132992723 -19544536 + B4A SINE B4 4 118 -174 9 1599 330 67 0 0 chr5 132992968 132993013 -19544246 + (CA)n Simple_repeat Simple_repeat 2 46 0 9 1599 378 61 0 0 chr5 132994503 132994552 -19542707 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 9 1599 279 71 0 0 chr5 132996035 132996077 -19541182 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 9 1599 225 284 22 43 chr5 132996099 132996191 -19541068 - B4A SINE B4 -16 276 187 9 1599 21 0 0 0 chr5 132996472 132996493 -19540766 + AT_rich Low_complexity Low_complexity 1 21 0 9 1599 236 284 48 24 chr5 132996545 132996628 -19540631 + B4A SINE B4 9 93 -199 9 1599 561 105 0 0 chr5 132996664 132996750 -19540509 + (GGGTG)n Simple_repeat Simple_repeat 3 88 0 9 1599 296 311 0 19 chr5 132996769 132996877 -19540382 + B4A SINE B4 186 291 -1 9 1599 225 256 12 0 chr5 132997867 132997949 -19539310 + A-rich Low_complexity Low_complexity 3 85 0 9 1599 231 36 0 0 chr5 132998265 132998293 -19538966 + (G)n Simple_repeat Simple_repeat 1 28 0 9 1599 580 123 193 0 chr5 132999167 132999281 -19537978 - URR1A DNA MER1_type -90 136 1 9 1599 207 88 0 0 chr5 132999370 132999404 -19537855 + (A)n Simple_repeat Simple_repeat 1 34 0 9 1599 300 258 220 61 chr5 132999473 132999605 -19537654 + B4 SINE B4 4 156 -136 9 1599 288 0 0 0 chr5 132999693 132999725 -19537534 + (CCA)n Simple_repeat Simple_repeat 1 32 0 9 1599 381 318 41 121 chr5 133000582 133000872 -19536387 + B4 SINE B4 8 274 -18 1 1599 360 97 0 0 chr5 133001052 133001114 -19536145 + (TG)n Simple_repeat Simple_repeat 2 63 0 2 1599 208 0 62 0 chr5 133002690 133002722 -19534537 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 3 1599 265 268 14 14 chr5 133003135 133003207 -19534052 - ID_B1 SINE B4 -9 215 144 4 1599 232 256 0 60 chr5 133003204 133003287 -19533972 - ID4 SINE ID -4 79 2 5 1599 194 108 54 0 chr5 133003847 133003884 -19533375 + T-rich Low_complexity Low_complexity 2 40 0 6 1599 27 0 0 0 chr5 133003966 133003993 -19533266 + AT_rich Low_complexity Low_complexity 1 27 0 7 1599 252 0 0 0 chr5 133004410 133004438 -19532821 + (TTG)n Simple_repeat Simple_repeat 2 29 0 8 1599 402 260 55 46 chr5 133004514 133004623 -19532636 + RSINE1 SINE B4 25 134 -31 9 1599 186 103 0 0 chr5 133004645 133004674 -19532585 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1599 394 284 37 0 chr5 133005868 133005977 -19531282 - B3A SINE B2 -85 113 1 1 1599 602 279 26 103 chr5 133006095 133006327 -19530932 + MTE2a LTR MaLR 123 336 -43 1 1599 322 184 40 44 chr5 133006306 133006437 -19530822 + MTE2a LTR MaLR 286 419 0 1 1599 681 271 28 6 chr5 133007645 133007827 -19529432 + ID_B1 SINE B4 2 187 -37 1 1599 555 289 0 0 chr5 133008600 133008728 -19528531 + B1_Mur1 SINE Alu 10 137 -12 1 1599 218 188 62 0 chr5 133008731 133008811 -19528448 + GA-rich Low_complexity Low_complexity 1 85 0 1 1599 732 103 0 0 chr5 133009839 133009946 -19527313 + (GA)n Simple_repeat Simple_repeat 2 108 0 1 1599 421 164 40 14 chr5 133010691 133010765 -19526494 - ID4_ SINE ID -2 81 6 1 1599 713 250 74 10 chr5 133012327 133012529 -19524730 + ID_B1 SINE B4 2 216 -8 1 1599 245 264 12 52 chr5 133013258 133013355 -19523904 + PB1D7 SINE Alu 14 106 -14 1 1599 741 79 0 0 chr5 133013829 133013930 -19523329 + (GGAA)n Simple_repeat Simple_repeat 1 101 0 2 1599 274 163 0 144 chr5 133014187 133014402 -19522857 - RMER17C LTR ERVK -136 274 91 2 1599 207 69 0 0 chr5 133014617 133014646 -19522613 + (CCA)n Simple_repeat Simple_repeat 1 29 0 2 1599 225 0 0 0 chr5 133014646 133014671 -19522588 + (A)n Simple_repeat Simple_repeat 1 25 0 2 1599 21 0 0 0 chr5 133015025 133015046 -19522213 + AT_rich Low_complexity Low_complexity 1 21 0 2 1599 365 0 0 22 chr5 133015934 133015980 -19521279 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 2 1599 381 22 0 0 chr5 133016260 133016306 -19520953 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1599 326 74 19 0 chr5 133016558 133016612 -19520647 + (CA)n Simple_repeat Simple_repeat 2 56 0 2 1599 348 24 0 0 chr5 133016856 133016897 -19520362 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1599 189 74 0 0 chr5 133017881 133017908 -19519351 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1599 298 296 0 24 chr5 133017923 133018006 -19519253 + G-rich Low_complexity Low_complexity 4 84 0 3 1599 22 0 0 0 chr5 133018252 133018274 -19518985 + AT_rich Low_complexity Low_complexity 1 22 0 3 1599 261 57 0 0 chr5 133018860 133018895 -19518364 + (TTC)n Simple_repeat Simple_repeat 1 35 0 3 1599 243 61 0 0 chr5 133018932 133018965 -19518294 + (CTCG)n Simple_repeat Simple_repeat 2 34 0 3 1599 219 231 21 42 chr5 133019068 133019163 -19518096 + (CCCG)n Simple_repeat Simple_repeat 3 95 0 3 1599 258 105 0 0 chr5 133019164 133019202 -19518057 + (TCTCCC)n Simple_repeat Simple_repeat 5 42 0 3 1599 249 284 0 0 chr5 133019509 133019576 -19517683 + C-rich Low_complexity Low_complexity 1 67 0 3 1599 35 0 0 0 chr5 133019987 133020022 -19517237 + AT_rich Low_complexity Low_complexity 1 35 0 3 1599 181 292 0 20 chr5 133020693 133020742 -19516517 - MIRb SINE MIR -19 249 202 3 1599 1151 226 115 38 chr5 133021580 133021953 -19515306 - MTD LTR MaLR 0 419 18 3 1599 216 242 45 0 chr5 133022450 133022516 -19514743 - MIRb SINE MIR -21 247 179 4 1599 255 125 0 0 chr5 133022565 133022605 -19514654 + (CATATA)n Simple_repeat Simple_repeat 5 44 0 4 1599 473 332 68 27 chr5 133022623 133022886 -19514373 - B4A SINE B4 -16 276 3 4 1599 361 224 123 39 chr5 133022919 133023049 -19514210 + B1_Mus1 SINE Alu 4 144 -4 4 1599 720 0 0 0 chr5 133023049 133023129 -19514130 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 4 1599 1659 210 112 18 chr5 133023341 133023724 -19513535 - MTD LTR MaLR 0 419 1 4 1599 891 229 11 28 chr5 133023835 133024054 -19513205 + B3 SINE B2 1 192 -3 4 1599 355 248 111 34 chr5 133024069 133024186 -19513073 - B1_Mur1 SINE Alu 0 149 24 4 1599 890 211 44 29 chr5 133024081 133024286 -19512973 - ID_B1 SINE B4 -8 216 9 4 1599 284 0 0 27 chr5 133025099 133025136 -19512123 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1599 865 254 0 6 chr5 133025427 133025609 -19511650 - B3A SINE B2 -16 182 2 5 1599 218 150 25 0 chr5 133025849 133025889 -19511370 + RSINE1 SINE B4 43 83 -82 5 1599 504 238 0 45 chr5 133026121 133026231 -19511028 - RSINE1 SINE B4 -31 134 30 5 1599 447 288 9 0 chr5 133026272 133026383 -19510876 + PB1D10 SINE Alu 1 112 -5 5 1599 294 243 90 36 chr5 133026404 133026515 -19510744 + PB1D10 SINE Alu 1 117 0 5 1599 295 353 67 0 chr5 133026573 133026692 -19510567 + B4A SINE B4 2 128 -164 5 1599 371 313 22 7 chr5 133026724 133026859 -19510400 + B1F1 SINE Alu 3 139 -10 5 1599 242 196 0 21 chr5 133027585 133027632 -19509627 + B3 SINE B2 1 46 -170 5 1599 583 159 44 0 chr5 133027633 133027746 -19509513 - B1_Mus2 SINE Alu -19 128 11 5 1599 247 236 20 101 chr5 133027665 133027764 -19509495 - MT2B LTR ERVL -354 247 157 5 1599 396 263 79 14 chr5 133027758 133027897 -19509362 + B3A SINE B2 31 178 -20 5 1599 185 0 0 39 chr5 133027905 133027931 -19509328 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1599 415 229 20 50 chr5 133028003 133028104 -19509155 + PB1D10 SINE Alu 12 109 -8 6 1599 1119 89 0 0 chr5 133028108 133028265 -19508994 + (GAGAA)n Simple_repeat Simple_repeat 4 160 0 6 1599 537 165 0 0 chr5 133028332 133028453 -19508806 + CT-rich Low_complexity Low_complexity 2 122 0 6 1599 399 252 119 52 chr5 133028584 133028718 -19508541 - B4 SINE B4 -148 144 2 6 1599 677 265 118 19 chr5 133028956 133029218 -19508041 + B4A SINE B4 5 292 0 6 1599 275 253 25 12 chr5 133029602 133029682 -19507577 + B4A SINE B4 2 82 -210 6 1599 399 41 0 0 chr5 133029732 133029781 -19507478 + (GA)n Simple_repeat Simple_repeat 1 49 0 6 1599 583 321 37 34 chr5 133029846 133030172 -19507087 + L1MC4 LINE L1 7697 8023 -19 6 1599 845 153 14 14 chr5 133030308 133030454 -19506805 + B1_Mur4 SINE Alu 5 150 0 6 1599 1328 149 37 0 chr5 133030492 133030707 -19506552 - URR1B DNA MER1_type 0 225 3 7 1599 610 280 51 11 chr5 133030887 133031064 -19506195 - ID_B1 SINE B4 -23 201 18 7 1599 886 101 6 6 chr5 133031066 133031225 -19506034 + (TG)n Simple_repeat Simple_repeat 2 160 0 7 1599 803 224 12 0 chr5 133031292 133031453 -19505806 + B3 SINE B2 43 205 -11 7 1599 844 243 5 22 chr5 133031522 133031707 -19505552 - B3A SINE B2 -16 182 1 7 1599 189 0 0 0 chr5 133031720 133031741 -19505518 + (TCTCTG)n Simple_repeat Simple_repeat 4 24 0 7 1599 632 234 66 0 chr5 133031741 133031878 -19505381 - RSINE1 SINE B4 -9 156 11 7 1599 304 311 22 15 chr5 133031895 133032029 -19505230 - ID_B1 SINE B4 -2 222 88 7 1599 387 0 0 0 chr5 133032034 133032077 -19505182 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 7 1599 1025 179 20 30 chr5 133032078 133032279 -19504980 - B3 SINE B2 -17 199 1 7 1599 342 0 0 0 chr5 133032897 133032935 -19504324 + (TC)n Simple_repeat Simple_repeat 2 39 0 8 1599 438 69 0 0 chr5 133032935 133032992 -19504267 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1599 616 236 125 25 chr5 133033134 133033334 -19503925 - B4A SINE B4 -23 269 50 8 1599 559 185 0 18 chr5 133034643 133034753 -19502506 + ZP3AR Satellite Satellite 41 148 -64 8 1599 350 218 26 0 chr5 133034753 133034831 -19502428 + ID4 SINE ID 1 80 -3 8 1599 628 250 0 7 chr5 133035349 133035486 -19501773 + RSINE1 SINE B4 1 136 -29 8 1599 374 39 19 0 chr5 133035493 133035545 -19501714 + (CA)n Simple_repeat Simple_repeat 1 53 0 8 1599 208 245 0 0 chr5 133035899 133035948 -19501311 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1599 1722 143 84 3 chr5 133036070 133036392 -19500867 + ORR1B1 LTR MaLR 39 386 -8 8 1599 898 172 7 14 chr5 133036425 133036572 -19500687 - B1_Mur4 SINE Alu -1 149 4 8 1599 206 32 32 0 chr5 133036680 133036711 -19500548 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 9 1599 234 0 0 0 chr5 133037338 133037364 -19499895 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1599 523 239 15 7 chr5 133037497 133037632 -19499627 - B1_Mur1 SINE Alu -11 138 3 9 1599 227 185 0 36 chr5 133037768 133037824 -19499435 + T-rich Low_complexity Low_complexity 2 55 0 9 1599 216 303 15 0 chr5 133037833 133037899 -19499360 - RSINE1 SINE B4 -12 153 87 9 1600 642 276 25 13 chr5 133038487 133038645 -19498614 + RSINE1 SINE B4 2 161 -4 9 1600 650 279 27 32 chr5 133039108 133039289 -19497970 + MTEb LTR MaLR 1 180 -199 9 1600 380 233 0 0 chr5 133039289 133039362 -19497897 + RSINE1 SINE B4 3 75 -90 9 1600 1308 186 128 119 chr5 133039402 133040005 -19497254 + RMER6D LTR ERVK 113 720 0 9 1600 280 211 53 0 chr5 133040006 133040063 -19497196 + RSINE1 SINE B4 71 130 -35 9 1600 783 59 0 0 chr5 133040082 133040183 -19497076 + (CA)n Simple_repeat Simple_repeat 1 101 0 9 1600 907 209 23 28 chr5 133040202 133040418 -19496841 + MTEb LTR MaLR 162 376 -3 9 1600 230 308 0 0 chr5 133040780 133040845 -19496414 - ID4 SINE ID -17 66 2 1 1600 297 0 0 0 chr5 133040855 133040888 -19496371 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1 1600 328 262 9 80 chr5 133040888 133041000 -19496259 - PB1 SINE Alu -13 114 11 1 1600 243 88 0 0 chr5 133041003 133041037 -19496222 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 1 1600 890 193 0 0 chr5 133041038 133041183 -19496076 - B1_Mur2 SINE Alu -2 147 3 1 1600 741 266 119 34 chr5 133041212 133041480 -19495779 + B4 SINE B4 1 291 -1 1 1600 202 300 0 14 chr5 133041736 133041807 -19495452 + T-rich Low_complexity Low_complexity 2 71 0 1 1600 1009 249 37 140 chr5 133041907 133042308 -19494951 - MTE2a LTR MaLR -9 370 11 1 1600 269 103 35 0 chr5 133042418 133042476 -19494783 + (TCTG)n Simple_repeat Simple_repeat 4 63 0 1 1600 242 261 22 11 chr5 133042479 133042568 -19494691 + (TATG)n Simple_repeat Simple_repeat 4 93 0 1 1600 212 157 39 19 chr5 133042537 133042579 -19494680 + (TCTG)n Simple_repeat Simple_repeat 3 46 0 1 1600 963 257 54 22 chr5 133042579 133042857 -19494402 - B4 SINE B4 -2 290 4 1 1600 212 157 39 19 chr5 133042857 133042866 -19494393 + (TCTG)n Simple_repeat Simple_repeat 2 10 0 1 1600 285 236 42 0 chr5 133042878 133042949 -19494310 - ID_B1 SINE B4 0 224 151 1 1600 456 259 34 8 chr5 133042949 133043066 -19494193 + RSINE1 SINE B4 3 122 -43 1 1600 315 259 65 97 chr5 133043486 133043640 -19493619 + B1F SINE Alu 1 149 0 1 1600 462 218 0 108 chr5 133043502 133043641 -19493618 + ID_B1 SINE B4 101 224 0 1 1600 786 252 30 10 chr5 133044116 133044137 -19493122 - ZP3AR Satellite Satellite -93 21 1 1 1600 319 268 14 0 chr5 133044137 133044208 -19493051 - ID4 SINE ID -11 72 1 1 1600 786 264 16 36 chr5 133044208 133044392 -19492867 - ZP3AR Satellite Satellite -10 202 24 1 1600 685 136 11 17 chr5 133044400 133044580 -19492679 + CT-rich Low_complexity Low_complexity 2 180 0 1 1600 731 77 40 34 chr5 133044571 133044747 -19492512 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 1 1600 180 125 0 0 chr5 133045303 133045335 -19491924 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1600 1182 68 7 0 chr5 133045336 133045483 -19491776 - B1_Mus1 SINE Alu 0 148 1 1 1600 579 279 37 25 chr5 133045527 133045689 -19491570 - RSINE1 SINE B4 0 165 2 1 1600 829 284 0 10 chr5 133045733 133045936 -19491323 + B3 SINE B2 2 202 -14 1 1600 585 260 20 20 chr5 133046108 133046257 -19491002 - B1F2 SINE Alu 0 149 1 1 1600 1417 270 68 35 chr5 133046292 133046807 -19490452 - Lx8 LINE L1 -1 7472 6941 1 1600 325 219 36 12 chr5 133047252 133047335 -19489924 - Lx8 LINE L1 -527 6946 6862 1 1600 623 206 0 0 chr5 133047774 133047881 -19489378 - B1_Mur2 SINE Alu -41 108 2 1 1600 1271 227 35 35 chr5 133048455 133048641 -19488618 - L1MB8 LINE L1 -6 6172 5991 1 1600 3019 70 39 0 chr5 133048641 133049026 -19488233 + MTB LTR MaLR 1 400 0 1 1600 1271 227 35 35 chr5 133049026 133049186 -19488073 - L1MB8 LINE L1 -188 5990 5826 1 1600 399 204 0 215 chr5 133049186 133049330 -19487929 + MTE2a LTR MaLR 1 113 -266 1 1600 1949 106 16 86 chr5 133049337 133049709 -19487550 + ORR1B1 LTR MaLR 41 386 -8 1 1600 870 212 23 80 chr5 133049723 133049985 -19487274 + MTE2a LTR MaLR 133 379 0 1 1600 236 322 48 40 chr5 133049987 133050113 -19487146 - L1MB8 LINE L1 -356 5828 5702 1 1600 968 105 11 23 chr5 133050141 133050317 -19486942 + (TTTC)n Simple_repeat Simple_repeat 4 177 0 1 1600 672 124 0 0 chr5 133050326 133050431 -19486828 + (TCCC)n Simple_repeat Simple_repeat 1 105 0 1 1600 441 228 48 29 chr5 133050431 133050535 -19486724 - PB1D10 SINE Alu -2 115 10 1 1600 250 312 31 31 chr5 133050450 133050546 -19486713 - ID_B1 SINE B4 -49 175 80 1 1600 538 281 27 38 chr5 133050548 133050733 -19486526 - L1MB8 LINE L1 -514 5664 5482 1 1600 352 243 0 13 chr5 133050792 133050867 -19486392 - ID4_ SINE ID -9 74 1 1 1600 338 232 0 0 chr5 133050887 133050956 -19486303 - ZP3AR Satellite Satellite -122 90 22 1 1600 360 283 85 23 chr5 133051017 133051147 -19486112 - ID_B1 SINE B4 -9 215 78 1 1600 304 289 28 19 chr5 133051367 133051473 -19485786 - RLTR23 LTR ERV1 0 430 324 1 1600 455 318 39 0 chr5 133051985 133052114 -19485145 + RSINE1 SINE B4 3 136 -29 1 1600 798 270 58 10 chr5 133052147 133052353 -19484906 + B3 SINE B2 1 216 0 1 1600 269 308 0 0 chr5 133053042 133053107 -19484152 + PB1D10 SINE Alu 3 67 -50 1 1600 297 0 0 0 chr5 133053316 133053349 -19483910 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1600 809 278 41 61 chr5 133053766 133054061 -19483198 - B4A SINE B4 -2 290 2 1 1600 2342 77 6 110 chr5 133054103 133054468 -19482791 + ORR1A2 LTR MaLR 1 327 0 1 1600 649 283 20 27 chr5 133054559 133054708 -19482551 + RSINE1 SINE B4 3 150 -15 1 1600 342 171 14 0 chr5 133055481 133055551 -19481708 - B4 SINE B4 -219 73 3 1 1600 543 292 0 14 chr5 133056420 133056566 -19480693 + ID_B1 SINE B4 81 224 0 1 1600 2205 72 3 62 chr5 133056726 133057065 -19480194 + ORR1A2 LTR MaLR 1 319 -8 1 1600 571 246 0 0 chr5 133057245 133057367 -19479892 - ID_B1 SINE B4 0 224 103 1 1600 431 255 45 84 chr5 133057367 133057399 -19479860 - B1F1 SINE Alu -1 148 1 1 1600 788 262 82 49 chr5 133057411 133057656 -19479603 + ORR1D2 LTR MaLR 5 257 -113 1 1600 207 0 0 0 chr5 133057660 133057683 -19479576 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1 1600 7600 44 16 3 chr5 133057684 133058604 -19478655 - L1_Mus1 LINE L1 0 6567 5636 1 1600 399 294 42 0 chr5 133058604 133058723 -19478536 + ORR1D2 LTR MaLR 243 366 -4 1 1600 315 0 0 0 chr5 133058847 133058882 -19478377 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1600 537 16 0 0 chr5 133059394 133059456 -19477803 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1600 593 312 26 15 chr5 133059637 133059832 -19477427 - ID_B1 SINE B4 -27 197 1 1 1600 861 38 0 0 chr5 133060069 133060174 -19477085 + (GA)n Simple_repeat Simple_repeat 1 105 0 1 1600 449 246 9 0 chr5 133060177 133060287 -19476972 - PB1D10 SINE Alu -6 111 1 1 1600 321 256 142 8 chr5 133060373 133060507 -19476752 - HAL1-3A_ME LINE L1 -421 2437 2286 1 1600 192 125 0 0 chr5 133060525 133060557 -19476702 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1600 463 329 28 0 chr5 133060557 133060700 -19476559 - RSINE1 SINE B4 -16 149 3 1 1600 288 188 188 0 chr5 133061102 133061187 -19476072 + B1F SINE Alu 49 149 0 1 1600 636 269 14 101 chr5 133061205 133061424 -19475835 + ZP3AR Satellite Satellite 2 201 -11 1 1600 265 264 97 0 chr5 133061424 133061496 -19475763 + ID4 SINE ID 1 79 -4 1 1600 385 236 0 68 chr5 133061862 133061980 -19475279 + B3A SINE B2 88 197 -1 1 1600 525 263 9 0 chr5 133061993 133062107 -19475152 - PB1D9 SINE Alu -4 116 2 1 1600 24 32 0 0 chr5 133062108 133062139 -19475120 + AT_rich Low_complexity Low_complexity 1 31 0 1 1600 850 233 5 41 chr5 133062548 133062745 -19474514 + ID_B1 SINE B4 3 192 -32 1 1600 210 118 0 0 chr5 133062764 133062798 -19474461 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1600 345 24 0 0 chr5 133063041 133063083 -19474176 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1600 418 276 29 0 chr5 133063422 133063527 -19473732 - PB1D10 SINE Alu -9 108 1 1 1600 757 185 13 7 chr5 133063553 133063705 -19473554 - RLTR26 LTR ERVK 0 642 490 1 1600 2142 158 19 28 chr5 133063730 133064159 -19473100 - RLTR26 LTR ERVK -217 425 1 1 1600 640 255 0 7 chr5 133064235 133064377 -19472882 - ID_B1 SINE B4 0 224 84 1 1600 432 55 0 0 chr5 133064592 133064647 -19472612 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1600 416 291 6 28 chr5 133064717 133064894 -19472365 + GA-rich Low_complexity Low_complexity 3 175 0 1 1600 269 281 48 12 chr5 133065693 133065776 -19471483 - ID_B1 SINE B4 -7 217 132 1 1600 669 247 39 39 chr5 133065799 133065980 -19471279 - B3A SINE B2 -16 182 2 1 1600 435 288 8 16 chr5 133065980 133066107 -19471152 - ID_B1 SINE B4 -82 142 17 1 1600 248 226 0 19 chr5 133066123 133066177 -19471082 - PB1D10 SINE Alu -8 109 57 1 1600 225 257 143 0 chr5 133066546 133066616 -19470643 - ID4_ SINE ID -3 80 1 1 1600 1462 116 12 17 chr5 133066595 133067357 -19469902 - ZP3AR Satellite Satellite -149 758 1 1 1600 211 319 21 32 chr5 133067455 133067549 -19469710 + MIRc SINE MIR 52 144 -124 1 1600 312 137 0 0 chr5 133068202 133068253 -19469006 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 1 1600 344 40 20 0 chr5 133068500 133068550 -19468709 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1600 773 255 215 8 chr5 133068635 133068872 -19468387 + B4A SINE B4 1 286 -6 1 1600 195 146 0 0 chr5 133068901 133068942 -19468317 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1600 420 218 6 11 chr5 133068970 133069151 -19468108 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1600 628 263 31 77 chr5 133069208 133069430 -19467829 - B3 SINE B2 -4 212 1 1 1600 333 253 126 0 chr5 133069434 133069529 -19467730 - PB1D10 SINE Alu -1 116 10 1 1600 278 246 0 62 chr5 133069569 133069634 -19467625 - RSINE1 SINE B4 0 165 105 1 1600 304 330 11 0 chr5 133070183 133070277 -19466982 - PB1D10 SINE Alu -13 104 10 1 1600 361 95 16 16 chr5 133070302 133070366 -19466893 + (TTCC)n Simple_repeat Simple_repeat 3 66 0 1 1600 348 24 0 0 chr5 133070416 133070457 -19466802 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1600 210 264 139 0 chr5 133070491 133070563 -19466696 + PB1 SINE Alu 44 125 -2 1 1600 378 298 66 0 chr5 133070669 133070790 -19466469 + ZP3AR Satellite Satellite 7 135 -77 1 1600 219 321 0 0 chr5 133070750 133070806 -19466453 + ID4_ SINE ID 1 56 -27 1 1600 386 121 0 15 chr5 133071392 133071459 -19465800 + (TCCC)n Simple_repeat Simple_repeat 1 66 0 1 1600 1488 93 1 10 chr5 133071514 133071867 -19465392 - ZP3AR Satellite Satellite -21 349 1 1 1600 592 266 0 0 chr5 133071961 133072089 -19465170 + MTEa LTR MaLR 3 130 -249 1 1600 764 289 55 58 chr5 133072259 133072589 -19464670 - ORR1E LTR MaLR -2 357 29 1 1600 212 86 29 0 chr5 133072593 133072628 -19464631 + (CCA)n Simple_repeat Simple_repeat 3 38 0 2 1600 542 207 33 7 chr5 133072635 133072786 -19464473 + HAL1-2a_MD LINE L1 2347 2501 -523 2 1600 607 271 101 22 chr5 133072862 133073130 -19464129 + L1M2 LINE L1 2330 2618 -3525 2 1600 4045 102 33 41 chr5 133073767 133074373 -19462886 + MT2B LTR ERVL 1 601 0 2 1600 433 247 0 0 chr5 133075030 133075127 -19462132 - MTE2b LTR MaLR -265 114 18 2 1600 361 239 0 89 chr5 133075219 133075320 -19461939 + MTEa LTR MaLR 1 92 -287 2 1600 276 253 128 61 chr5 133075410 133075574 -19461685 + MTEa LTR MaLR 116 290 -69 2 1600 506 289 88 44 chr5 133075726 133075954 -19461305 + B4A SINE B4 6 243 -49 2 1600 393 58 0 0 chr5 133076004 133076056 -19461203 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 1600 417 297 26 46 chr5 133076525 133076719 -19460540 - B3A SINE B2 -6 192 3 2 1600 651 275 14 0 chr5 133077075 133077217 -19460042 + B3A SINE B2 6 149 -49 2 1600 909 104 0 0 chr5 133077240 133077375 -19459884 + (CA)n Simple_repeat Simple_repeat 1 135 0 2 1600 589 211 156 0 chr5 133077412 133077540 -19459719 + B1_Mus1 SINE Alu 1 148 0 2 1600 276 30 0 0 chr5 133077542 133077575 -19459684 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2 1600 343 333 0 0 chr5 133077598 133077712 -19459547 + ID_B1 SINE B4 66 179 -45 2 1600 435 269 0 27 chr5 133077622 133077733 -19459526 + PB1D10 SINE Alu 9 116 -1 2 1600 8033 50 11 9 chr5 133077957 133079026 -19458233 + L1_Mus1 LINE L1 5497 6567 0 2 1600 366 274 290 40 chr5 133079083 133079307 -19457952 - B4A SINE B4 -12 280 1 2 1600 198 71 0 0 chr5 133079619 133079647 -19457612 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 1600 743 158 5 48 chr5 133079650 133079836 -19457423 + GA-rich Low_complexity Low_complexity 3 180 0 2 1600 288 0 0 0 chr5 133079962 133079994 -19457265 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1600 358 255 119 28 chr5 133080388 133080497 -19456762 - PB1D9 SINE Alu -1 119 1 2 1600 252 122 0 0 chr5 133080534 133080575 -19456684 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1600 652 253 25 25 chr5 133080595 133080757 -19456502 - B3A SINE B2 -35 163 2 2 1600 614 263 64 27 chr5 133081057 133081274 -19455985 + B4 SINE B4 2 226 -66 2 1600 419 260 28 125 chr5 133081274 133081316 -19455943 + RSINE1 SINE B4 2 42 -123 2 1600 3588 20 0 0 chr5 133081316 133081712 -19455547 - MTA_Mm LTR MaLR 0 396 1 2 1600 419 260 28 125 chr5 133081712 133081845 -19455414 + RSINE1 SINE B4 43 160 -5 2 1600 303 279 0 25 chr5 133082416 133082497 -19454762 - ID_B1 SINE B4 0 224 146 2 1600 212 368 26 17 chr5 133082497 133082532 -19454727 - B1F2 SINE Alu 0 149 33 2 1600 5407 97 12 11 chr5 133082532 133083284 -19453975 - L1VL2 LINE L1 -5492 843 91 2 1600 292 170 0 19 chr5 133083285 133083339 -19453920 - ID_B1 SINE B4 -60 164 112 2 1600 444 304 8 39 chr5 133083482 133083612 -19453647 - B1F SINE Alu -23 126 1 2 1600 229 154 39 0 chr5 133083672 133083724 -19453535 - MER33 DNA MER1_type -7 317 264 2 1600 410 239 29 51 chr5 133083971 133084108 -19453151 + MER117 DNA MER1_type 23 156 -41 2 1600 820 284 64 60 chr5 133084389 133084764 -19452495 + MTD LTR MaLR 10 405 -14 2 1600 619 280 99 16 chr5 133084873 133085065 -19452194 - B4 SINE B4 -75 217 10 2 1600 264 122 0 0 chr5 133085065 133085106 -19452153 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 2 1600 245 218 0 25 chr5 133085130 133085211 -19452048 - B4 SINE B4 -215 77 1 2 1600 393 75 0 0 chr5 133085876 133085929 -19451330 + (GGA)n Simple_repeat Simple_repeat 3 55 0 2 1600 207 0 0 0 chr5 133086085 133086108 -19451151 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 2 1600 264 164 0 0 chr5 133086288 133086355 -19450904 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 1600 345 229 158 119 chr5 133086358 133086636 -19450623 - B4 SINE B4 -2 290 2 2 1600 738 234 45 0 chr5 133086672 133086826 -19450433 - RSINE1 SINE B4 -2 163 3 2 1600 962 218 18 45 chr5 133087102 133087323 -19449936 - ID_B1 SINE B4 -9 215 1 2 1600 256 312 11 21 chr5 133087375 133087470 -19449789 + CT-rich Low_complexity Low_complexity 3 96 0 2 1600 566 140 0 10 chr5 133087786 133087887 -19449372 + (TCC)n Simple_repeat Simple_repeat 1 100 0 2 1600 434 282 10 0 chr5 133087897 133088000 -19449259 - PB1D10 SINE Alu -5 112 9 2 1600 186 191 0 0 chr5 133088325 133088372 -19448887 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1600 557 266 163 28 chr5 133088390 133088641 -19448618 - B4A SINE B4 -6 286 2 2 1600 361 361 5 24 chr5 133088726 133088936 -19448323 - L4 LINE RTE -1090 939 734 2 1600 881 214 96 5 chr5 133089055 133089252 -19448007 + ID_B1 SINE B4 5 219 -5 2 1600 492 0 44 0 chr5 133089861 133089929 -19447330 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1600 410 294 0 18 chr5 133089983 133090094 -19447165 - PB1D10 SINE Alu -8 109 1 2 1600 801 251 68 0 chr5 133090103 133090310 -19446949 - ID_B1 SINE B4 0 224 4 2 1600 559 233 92 0 chr5 133090644 133090764 -19446495 + RSINE1 SINE B4 11 141 -24 2 1600 1163 69 7 0 chr5 133090774 133090919 -19446340 - B1_Mus1 SINE Alu -1 147 2 2 1600 477 47 0 0 chr5 133090954 133091018 -19446241 + (CAAAC)n Simple_repeat Simple_repeat 5 68 0 2 1600 604 277 101 53 chr5 133091408 133091857 -19445402 + RMER13A LTR ERVK 95 622 -286 2 1600 405 270 35 0 chr5 133092004 133092119 -19445140 - ID_B1 SINE B4 -104 120 2 2 1600 528 254 7 44 chr5 133092484 133092535 -19444724 - ID_B1 SINE B4 -13 211 164 2 1600 1782 154 103 29 chr5 133092535 133092883 -19444376 - ORR1D1 LTR MaLR 0 374 1 2 1600 528 254 7 44 chr5 133092883 133092967 -19444292 - ID_B1 SINE B4 -61 163 81 2 1600 735 237 54 4 chr5 133093224 133093433 -19443826 + B3A SINE B2 1 216 0 2 1600 447 100 0 0 chr5 133093469 133093539 -19443720 + (GA)n Simple_repeat Simple_repeat 1 70 0 2 1600 438 279 39 0 chr5 133093546 133093650 -19443609 - RSINE1 SINE B4 -55 110 3 2 1600 774 282 67 56 chr5 133093673 133094048 -19443211 - MTE2a LTR MaLR 0 379 1 2 1600 398 187 11 0 chr5 133094182 133094273 -19442986 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 1600 2396 164 27 10 chr5 133094298 133094710 -19442549 - MTC LTR MaLR -2 419 1 2 1600 697 286 9 122 chr5 133094743 133095062 -19442197 - B4 SINE B4 -9 283 1 2 1600 1260 79 62 0 chr5 133095093 133095270 -19441989 + B2_Mm2 SINE B2 1 188 -7 2 1600 541 223 150 19 chr5 133095369 133095529 -19441730 + Lx8 LINE L1 7072 7252 -221 2 1600 227 145 287 98 chr5 133095464 133095586 -19441673 + RMER1C Other Other 1057 1201 -141 2 1600 330 252 65 65 chr5 133095606 133095729 -19441530 + B3A SINE B2 76 198 0 2 1600 272 188 0 15 chr5 133096272 133096337 -19440922 + CT-rich Low_complexity Low_complexity 2 65 0 2 1600 644 112 250 0 chr5 133096337 133096453 -19440806 - B1_Mur4 SINE Alu -5 145 1 2 1600 387 0 0 0 chr5 133096771 133096814 -19440445 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 1600 1488 185 20 25 chr5 133096856 133097361 -19439898 - ZP3AR Satellite Satellite -152 502 1 2 1600 270 153 0 48 chr5 133097647 133097709 -19439550 - L1MA5 LINE L1 0 6300 6242 2 1600 559 240 143 20 chr5 133097893 133098089 -19439170 + L1M5 LINE L1 5526 5745 -379 2 1600 183 100 0 0 chr5 133098098 133098128 -19439131 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1600 561 282 6 18 chr5 133098144 133098310 -19438949 - RSINE1 SINE B4 0 165 2 2 1600 679 232 71 76 chr5 133098448 133098686 -19438573 + B4A SINE B4 2 238 -54 2 1600 221 330 64 64 chr5 133098792 133098886 -19438373 + RSINE1 SINE B4 70 163 -2 2 1600 477 0 0 0 chr5 133099595 133099648 -19437611 + (TC)n Simple_repeat Simple_repeat 2 54 0 2 1600 631 238 85 28 chr5 133099650 133099827 -19437432 - B3A SINE B2 -11 187 1 2 1600 637 277 97 65 chr5 133099834 133100050 -19437209 - B4A SINE B4 -68 224 2 2 1600 300 227 133 10 chr5 133100097 133100195 -19437064 + MER34 LTR ERV1 433 542 0 2 1600 1167 236 52 82 chr5 133100247 133100276 -19436983 + MTE2a LTR MaLR 4 31 -348 2 1600 2504 151 7 15 chr5 133100276 133100686 -19436573 + MTB_Mm LTR MaLR 1 407 0 2 1600 1167 236 52 82 chr5 133100686 133100720 -19436539 + MTE2a LTR MaLR 32 60 -319 2 1600 2177 138 10 69 chr5 133100720 133101109 -19436150 + ORR1B2 LTR MaLR 1 366 -1 2 1600 1167 236 52 82 chr5 133101109 133101432 -19435827 + MTE2a LTR MaLR 61 378 -1 2 1600 556 222 56 12 chr5 133101503 133101663 -19435596 + MER2 DNA MER2_type 87 253 -92 2 1600 273 57 0 0 chr5 133101752 133101787 -19435472 + (GA)n Simple_repeat Simple_repeat 2 36 0 2 1600 261 257 80 13 chr5 133101807 133101882 -19435377 - RSINE1 SINE B4 -85 80 1 2 1600 794 151 170 0 chr5 133102117 133102276 -19434983 + B2_Mm2 SINE B2 2 187 -8 2 1600 902 185 47 11 chr5 133102307 133102498 -19434761 - B3A SINE B2 0 198 1 2 1600 644 273 57 14 chr5 133102705 133102917 -19434342 + ID_B1 SINE B4 3 223 -1 2 1600 216 0 0 0 chr5 133103045 133103069 -19434190 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1600 531 215 16 8 chr5 133103069 133103191 -19434068 - RSINE1 SINE B4 -41 124 2 2 1600 244 270 95 0 chr5 133103317 133103391 -19433868 + ID4 SINE ID 3 83 0 2 1600 27 49 0 0 chr5 133103488 133103529 -19433730 + AT_rich Low_complexity Low_complexity 1 41 0 2 1600 638 253 7 13 chr5 133103574 133103726 -19433533 - RSINE1 SINE B4 -12 153 3 2 1600 228 312 56 45 chr5 133104011 133104189 -19433070 + L2c LINE L2 3195 3374 -13 2 1600 351 0 0 0 chr5 133104447 133104486 -19432773 + (TC)n Simple_repeat Simple_repeat 2 40 0 3 1600 255 212 20 20 chr5 133104488 133104589 -19432670 + (TATG)n Simple_repeat Simple_repeat 2 102 0 3 1600 486 318 40 22 chr5 133104616 133104841 -19432418 - B4A SINE B4 -10 282 54 3 1600 1921 210 16 0 chr5 133104925 133105296 -19431963 - MTEa LTR MaLR -2 377 1 3 1600 227 360 29 29 chr5 133105334 133105437 -19431822 + PB1D10 SINE Alu 13 115 -2 3 1600 539 236 24 8 chr5 133105443 133105567 -19431692 + RSINE1 SINE B4 4 129 -36 3 1600 26 0 0 0 chr5 133105617 133105643 -19431616 + AT_rich Low_complexity Low_complexity 1 26 0 3 1600 2099 127 57 27 chr5 133105678 133106049 -19431210 - ORR1B1 LTR MaLR -8 386 5 3 1600 324 70 0 0 chr5 133106151 133106194 -19431065 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1600 1765 150 71 29 chr5 133106526 133106877 -19430382 + ORR1C1 LTR MaLR 1 366 -12 3 1600 506 280 227 23 chr5 133106895 133107155 -19430104 + MTD LTR MaLR 5 317 -102 3 1600 277 167 47 23 chr5 133107424 133107510 -19429749 + (TA)n Simple_repeat Simple_repeat 2 89 0 3 1600 763 251 34 11 chr5 133107565 133107742 -19429517 - B3A SINE B2 -16 182 2 3 1600 1471 236 34 45 chr5 133108096 133108291 -19428968 - ORR1D1 LTR MaLR 0 374 169 3 1600 886 69 15 0 chr5 133108291 133108422 -19428837 + (AGGGGG)n Simple_repeat Simple_repeat 2 134 0 3 1600 1471 236 34 45 chr5 133108422 133108508 -19428751 - ORR1D1 LTR MaLR -206 168 87 3 1600 1156 139 108 10 chr5 133108508 133108712 -19428547 + URR1B DNA MER1_type 2 225 0 3 1600 1471 236 34 45 chr5 133108712 133108807 -19428452 - ORR1D1 LTR MaLR -288 86 1 3 1600 364 240 83 0 chr5 133108846 133108942 -19428317 - B3A SINE B2 -93 105 2 3 1600 288 0 0 0 chr5 133109066 133109098 -19428161 + (TGG)n Simple_repeat Simple_repeat 3 34 0 3 1600 360 0 0 0 chr5 133109104 133109144 -19428115 + (TG)n Simple_repeat Simple_repeat 2 41 0 3 1600 254 186 0 0 chr5 133109808 133109851 -19427408 + Ricksha_c DNA MuDR 354 396 -1652 3 1600 511 287 7 59 chr5 133109854 133110006 -19427253 + RSINE1 SINE B4 3 146 -19 3 1600 824 240 65 28 chr5 133110007 133110219 -19427040 + B4 SINE B4 13 232 -60 3 1600 2329 111 46 3 chr5 133110219 133110589 -19426670 + ORR1B1 LTR MaLR 1 386 -8 3 1600 235 239 0 0 chr5 133110587 133110633 -19426626 + B4 SINE B4 222 267 -25 3 1600 213 39 0 0 chr5 133110648 133110674 -19426585 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 1600 302 280 190 0 chr5 133110715 133110815 -19426444 + MTEa LTR MaLR 51 169 -210 3 1600 1167 113 0 6 chr5 133111105 133111250 -19426009 + B2_Mm2 SINE B2 1 145 -50 3 1600 270 0 0 0 chr5 133111250 133111280 -19425979 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1600 1167 113 0 6 chr5 133111280 133111312 -19425947 + B2_Mm2 SINE B2 146 177 -18 3 1600 456 227 25 8 chr5 133111469 133111589 -19425670 - MTD LTR MaLR 0 419 298 3 1600 734 254 15 15 chr5 133111609 133111817 -19425442 - MTD LTR MaLR -190 189 13 3 1600 905 233 121 40 chr5 133111836 133112207 -19425052 - MTD-int LTR MaLR -7 1251 851 3 1600 622 172 66 0 chr5 133112595 133112717 -19424542 + B3 SINE B2 1 130 -86 3 1600 727 155 286 0 chr5 133112750 133112918 -19424341 + B3 SINE B2 1 216 0 3 1600 21 57 0 0 chr5 133112920 133112955 -19424304 + AT_rich Low_complexity Low_complexity 1 35 0 3 1600 824 240 16 22 chr5 133112957 133113140 -19424119 - B3A SINE B2 -16 182 1 3 1600 349 268 208 73 chr5 133113323 133113476 -19423783 + ORR1E LTR MaLR 8 204 -155 3 1600 2142 209 95 59 chr5 133113476 133114066 -19423193 - RMER19C LTR ERVK 0 611 1 3 1600 349 268 208 73 chr5 133114066 133114186 -19423073 + ORR1E LTR MaLR 205 317 -42 3 1600 261 0 0 0 chr5 133114191 133114220 -19423039 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1600 810 241 83 80 chr5 133114244 133114533 -19422726 - B4A SINE B4 -2 290 1 3 1600 243 0 0 0 chr5 133114968 133114995 -19422264 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1600 620 322 11 0 chr5 133115512 133115686 -19421573 - B3A SINE B2 -22 176 1 3 1600 723 296 60 36 chr5 133115690 133115998 -19421261 - L1MB5 LINE L1 -36 6138 5823 3 1600 330 265 24 49 chr5 133116076 133116199 -19421060 - PB1D9 SINE Alu 0 120 1 3 1600 1026 136 4 135 chr5 133116250 133116382 -19420877 + URR1B DNA MER1_type 26 157 -68 3 1600 1167 55 0 20 chr5 133116382 133116531 -19420728 + B1_Mus2 SINE Alu 2 147 0 3 1600 1026 136 4 135 chr5 133116531 133116628 -19420631 + URR1B DNA MER1_type 158 225 0 3 1600 490 373 38 66 chr5 133116668 133117139 -19420120 - MT2A LTR ERVL -74 459 2 3 1600 450 75 0 0 chr5 133117424 133117491 -19419768 + (TATG)n Simple_repeat Simple_repeat 2 68 0 3 1600 532 231 77 0 chr5 133117501 133117618 -19419641 - ID_B1 SINE B4 -13 211 86 3 1600 400 274 0 0 chr5 133117641 133117743 -19419516 - PB1D10 SINE Alu -15 102 1 3 1600 424 340 47 0 chr5 133117838 133117988 -19419271 - MTEb LTR MaLR -2 377 221 3 1600 564 226 164 0 chr5 133118177 133118323 -19418936 - ID_B1 SINE B4 -53 171 2 3 1600 296 247 20 92 chr5 133118374 133118472 -19418787 - ID_B1 SINE B4 -57 167 77 3 1600 309 206 112 61 chr5 133118716 133118814 -19418445 - MT2B LTR ERVL -323 278 176 3 1600 479 154 13 0 chr5 133118748 133118826 -19418433 - B1_Mus1 SINE Alu -69 79 1 3 1600 970 223 5 5 chr5 133118860 133119058 -19418201 - B3A SINE B2 0 198 1 3 1600 181 234 46 15 chr5 133119330 133119395 -19417864 + MIRc SINE MIR 102 168 -100 3 1600 286 253 84 112 chr5 133119708 133119815 -19417444 + PB1D10 SINE Alu 3 106 -11 3 1600 204 40 0 0 chr5 133119891 133119916 -19417343 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1600 724 209 109 43 chr5 133120056 133120266 -19416993 - ID_B1 SINE B4 0 224 1 3 1600 729 304 3 97 chr5 133120465 133120753 -19416506 - ORR1E LTR MaLR -38 321 61 3 1600 3800 129 38 16 chr5 133121040 133121654 -19415605 + Lx4A LINE L1 6431 7057 -1 3 1600 182 62 31 0 chr5 133121656 133121688 -19415571 + (TTAA)n Simple_repeat Simple_repeat 3 35 0 3 1600 216 209 0 0 chr5 133121806 133121849 -19415410 + ID SINE ID 2 44 -180 3 1600 261 0 0 0 chr5 133122717 133122746 -19414513 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1600 632 328 36 44 chr5 133122803 133123009 -19414250 - B4A SINE B4 -2 290 86 3 1600 279 0 0 0 chr5 133123009 133123040 -19414219 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1600 632 289 96 71 chr5 133123040 133123282 -19413977 - B4A SINE B4 -11 281 40 3 1600 206 231 19 19 chr5 133123408 133123461 -19413798 + C-rich Low_complexity Low_complexity 3 55 0 3 1600 351 0 0 0 chr5 133124190 133124229 -19413030 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 1600 885 216 52 5 chr5 133124326 133124517 -19412742 - B3 SINE B2 -12 204 5 3 1600 284 0 28 0 chr5 133124916 133124952 -19412307 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1600 381 212 26 0 chr5 133125039 133125152 -19412107 + CT-rich Low_complexity Low_complexity 1 116 0 3 1600 587 222 29 36 chr5 133125152 133125292 -19411967 - B1F1 SINE Alu -8 141 3 3 1600 216 175 0 24 chr5 133125351 133125392 -19411867 - PB1D7 SINE Alu -56 64 25 3 1600 247 292 47 0 chr5 133125919 133126025 -19411234 - MER63D DNA AcHobo -821 240 130 3 1600 201 74 0 0 chr5 133126037 133126064 -19411195 + (CTTA)n Simple_repeat Simple_repeat 4 30 0 3 1600 293 260 0 12 chr5 133126069 133126173 -19411086 - B1F1 SINE Alu -9 140 9 3 1600 221 324 14 188 chr5 133126082 133126238 -19411021 - ID_B1 SINE B4 -48 176 1 3 1600 239 263 35 0 chr5 133126238 133126295 -19410964 - ID2 SINE ID -24 59 1 3 1600 1295 140 0 10 chr5 133126252 133126511 -19410748 - ZP3AR Satellite Satellite -21 256 1 3 1600 207 0 0 0 chr5 133126604 133126627 -19410632 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1600 261 0 0 0 chr5 133127649 133127678 -19409581 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1600 546 16 0 0 chr5 133127679 133127742 -19409517 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1600 232 226 0 54 chr5 133127762 133127818 -19409441 + ID_B1 SINE B4 127 179 -45 3 1600 262 167 62 0 chr5 133127771 133127819 -19409440 + B1F SINE Alu 52 102 -47 3 1600 707 159 0 8 chr5 133127819 133127952 -19409307 + CT-rich Low_complexity Low_complexity 1 132 0 3 1600 1832 205 16 5 chr5 133128753 133129125 -19408134 + MTEb LTR MaLR 4 379 0 3 1600 243 88 0 0 chr5 133129181 133129215 -19408044 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1600 189 352 95 8 chr5 133129538 133129664 -19407595 - MIRb SINE MIR -44 224 88 3 1600 333 0 0 0 chr5 133130238 133130275 -19406984 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 3 1600 792 242 61 0 chr5 133130275 133130473 -19406786 - ID_B1 SINE B4 -12 212 3 3 1600 1005 161 136 0 chr5 133130786 133130985 -19406274 + URR1A DNA MER1_type 1 226 0 3 1600 498 293 56 77 chr5 133131749 133131982 -19405277 - RMER15 LTR ERVL 0 575 348 3 1600 311 268 10 0 chr5 133132388 133132485 -19404774 + MLT2B3 LTR ERVL 3 100 -454 3 1600 470 277 0 68 chr5 133132554 133132701 -19404558 + RMER30 DNA MER1_type 39 175 -27 3 1600 347 311 49 128 chr5 133132764 133133070 -19404189 + ORR1E LTR MaLR 72 353 -6 3 1600 448 260 11 66 chr5 133133585 133133766 -19403493 + RMER15 LTR ERVL 336 506 -69 3 1600 1869 130 19 82 chr5 133133837 133134215 -19403044 + ORR1B1 LTR MaLR 41 394 0 3 1600 1613 228 22 17 chr5 133134215 133134576 -19402683 - MTD LTR MaLR -56 363 1 3 1600 474 184 10 67 chr5 133134697 133134910 -19402349 - Lx9 LINE L1 0 7644 7400 3 1600 1134 231 70 4 chr5 133135137 133135407 -19401852 - B4A SINE B4 -4 288 1 3 1600 409 293 73 8 chr5 133135556 133135680 -19401579 + ID_B1 SINE B4 90 221 -3 3 1600 387 89 0 0 chr5 133135683 133135739 -19401520 + (GGAA)n Simple_repeat Simple_repeat 2 57 0 3 1600 236 312 94 0 chr5 133135806 133135870 -19401389 + RSINE1 SINE B4 92 161 -4 3 1600 25 51 0 0 chr5 133135876 133135915 -19401344 + AT_rich Low_complexity Low_complexity 1 39 0 4 1600 212 211 0 37 chr5 133136217 133136271 -19400988 + G-rich Low_complexity Low_complexity 5 56 0 4 1600 256 96 58 0 chr5 133136483 133136535 -19400724 + CT-rich Low_complexity Low_complexity 1 55 0 4 1600 403 263 8 45 chr5 133136600 133136957 -19400302 + CT-rich Low_complexity Low_complexity 1 344 0 4 1600 486 120 0 0 chr5 133137450 133137525 -19399734 + (TC)n Simple_repeat Simple_repeat 1 75 0 4 1600 189 0 0 0 chr5 133137527 133137548 -19399711 + (TTCC)n Simple_repeat Simple_repeat 4 24 0 4 1600 368 264 44 0 chr5 133137555 133137646 -19399613 + B1F2 SINE Alu 13 107 -42 4 1600 840 134 0 7 chr5 133137895 133138030 -19399229 + B1_Mus2 SINE Alu 5 138 -9 4 1600 517 236 0 45 chr5 133138870 133139003 -19398256 - ID_B1 SINE B4 0 224 98 4 1600 204 206 0 0 chr5 133139022 133139056 -19398203 + polypyrimidine Low_complexity Low_complexity 2 35 0 4 1600 333 267 70 78 chr5 133139230 133139372 -19397887 + B1F SINE Alu 2 142 -7 4 1600 599 78 0 11 chr5 133139390 133139481 -19397778 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 1600 483 242 0 88 chr5 133140194 133140330 -19396929 + ID_B1 SINE B4 81 204 -20 4 1600 22 0 0 0 chr5 133140393 133140415 -19396844 + AT_rich Low_complexity Low_complexity 1 22 0 4 1600 671 234 12 127 chr5 133140533 133140792 -19396467 - RMER15 LTR ERVL -11 564 336 4 1600 670 238 12 24 chr5 133140998 133141022 -19396237 - RSINE1 SINE B4 -3 162 140 4 1600 1314 78 0 0 chr5 133141022 133141202 -19396057 + (TG)n Simple_repeat Simple_repeat 1 180 0 4 1600 670 238 12 24 chr5 133141202 133141341 -19395918 - RSINE1 SINE B4 -26 139 1 4 1600 471 118 0 0 chr5 133141669 133141745 -19395514 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1600 729 263 36 72 chr5 133141755 133142005 -19395254 - B4 SINE B4 -51 241 1 4 1600 604 296 37 5 chr5 133142061 133142248 -19395011 - MER63A DNA AcHobo -7 203 11 4 1600 1075 152 104 38 chr5 133142484 133142696 -19394563 + URR1A DNA MER1_type 1 226 0 4 1600 320 272 30 36 chr5 133143990 133144130 -19393129 - MLT1A0 LTR MaLR -17 348 228 4 1600 791 280 59 44 chr5 133144120 133144393 -19392866 + MTEb LTR MaLR 100 376 -3 4 1600 369 320 28 17 chr5 133144720 133144901 -19392358 + L3 LINE CR1 4091 4273 -216 4 1600 490 245 66 33 chr5 133144961 133145188 -19392071 + ORR1E LTR MaLR 1 242 -128 4 1600 513 47 0 0 chr5 133145283 133145347 -19391912 + (TCCC)n Simple_repeat Simple_repeat 2 65 0 4 1600 1032 65 0 0 chr5 133145367 133145506 -19391753 - B1_Mus1 SINE Alu 0 148 10 4 1600 577 277 26 6 chr5 133145670 133145826 -19391433 - RSINE1 SINE B4 -6 159 1 4 1600 284 250 28 0 chr5 133146054 133146126 -19391133 - ID_B1 SINE B4 -52 172 99 4 1600 561 30 0 0 chr5 133146212 133146279 -19390980 + (CATA)n Simple_repeat Simple_repeat 2 68 0 4 1600 315 191 0 0 chr5 133146454 133146522 -19390737 + CT-rich Low_complexity Low_complexity 2 69 0 4 1600 397 273 55 0 chr5 133147068 133147178 -19390081 - PB1D7 SINE Alu 0 120 5 4 1600 225 264 0 130 chr5 133147260 133147360 -19389899 + MLT1A1 LTR MaLR 16 102 -272 4 1600 299 264 0 103 chr5 133148046 133148143 -19389116 - MTEa LTR MaLR -289 90 4 4 1600 236 290 42 31 chr5 133148237 133148333 -19388926 + MLT1A1 LTR MaLR 311 407 -1 4 1600 365 331 38 38 chr5 133148466 133148733 -19388526 + RLTR42-int LTR ERVK 1139 1405 -4117 4 1600 423 184 0 26 chr5 133148862 133148940 -19388319 - ID_B1 SINE B4 -67 157 82 4 1600 585 136 45 9 chr5 133149018 133149129 -19388130 + URR1B DNA MER1_type 111 225 0 4 1600 277 287 29 87 chr5 133149129 133149201 -19388058 + B1F SINE Alu 59 124 -25 4 1600 390 197 0 0 chr5 133149228 133149294 -19387965 + B1F SINE Alu 71 136 -13 4 1600 953 236 9 9 chr5 133149967 133150185 -19387074 + ID_B1 SINE B4 2 219 -5 4 1600 211 246 15 0 chr5 133150668 133150733 -19386526 + B1F SINE Alu 80 145 -4 4 1600 661 37 207 18 chr5 133150817 133150928 -19386331 + B1_Mus1 SINE Alu 6 137 -11 4 1600 203 200 25 0 chr5 133150930 133150970 -19386289 + CT-rich Low_complexity Low_complexity 1 41 0 4 1600 309 273 88 36 chr5 133151137 133151274 -19385985 - L2a LINE L2 -270 3156 3013 4 1600 325 188 0 0 chr5 133151382 133151446 -19385813 - HAL1-3A_ME LINE L1 -819 2039 1976 4 1600 192 234 0 0 chr5 133151446 133151493 -19385766 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1600 943 312 31 14 chr5 133151493 133151779 -19385480 - B4 SINE B4 0 292 2 4 1600 881 256 55 8 chr5 133151895 133152131 -19385128 + MT2A LTR ERVL 268 514 -19 4 1600 298 315 47 40 chr5 133152825 133152974 -19384285 - MTEa LTR MaLR -118 261 112 4 1600 255 254 0 16 chr5 133152995 133153059 -19384200 + CT-rich Low_complexity Low_complexity 3 65 0 4 1600 295 310 40 19 chr5 133153065 133153173 -19384086 - PB1D10 SINE Alu -5 112 5 4 1600 820 304 24 19 chr5 133153378 133153583 -19383676 - B4 SINE B4 0 292 87 4 1600 465 0 46 0 chr5 133153583 133153648 -19383611 + (TATG)n Simple_repeat Simple_repeat 3 70 0 4 1600 432 303 45 11 chr5 133153667 133153844 -19383415 - Lx6 LINE L1 -43 7417 7235 4 1600 422 223 0 11 chr5 133153845 133153940 -19383319 - B4 SINE B4 -197 95 2 4 1600 262 154 17 3 chr5 133153962 133154045 -19383214 - MIRc SINE MIR -71 191 112 4 1600 35 0 0 0 chr5 133154232 133154267 -19382992 + AT_rich Low_complexity Low_complexity 1 35 0 4 1600 621 234 0 0 chr5 133154556 133154680 -19382579 + RSINE1 SINE B4 5 128 -37 4 1600 483 259 75 22 chr5 133154862 133154996 -19382263 - ID_B1 SINE B4 -2 222 82 4 1600 252 185 0 0 chr5 133155039 133155093 -19382166 + C-rich Low_complexity Low_complexity 6 59 0 4 1600 479 16 0 31 chr5 133155417 133155482 -19381777 + (TCTCTG)n Simple_repeat Simple_repeat 6 68 0 4 1600 2215 204 18 8 chr5 133155482 133155980 -19381279 + RLTR11A2 LTR ERVK 4 506 -21 4 1600 532 326 84 28 chr5 133156003 133156252 -19381007 - B4 SINE B4 -27 265 3 4 1600 396 0 0 0 chr5 133156268 133156312 -19380947 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 4 1600 592 239 13 60 chr5 133156338 133156489 -19380770 - RSINE1 SINE B4 -21 144 1 4 1600 567 274 0 0 chr5 133156522 133156639 -19380620 + PB1 SINE Alu 1 117 -10 4 1600 40471 15 3 33 chr5 133156677 133163493 -19373766 - L1Md_A LINE L1 0 6582 1 4 1600 1344 217 70 50 chr5 133163722 133164081 -19373178 - MTEa LTR MaLR -13 366 1 4 1600 315 0 0 0 chr5 133164102 133164137 -19373122 + (TC)n Simple_repeat Simple_repeat 2 36 0 4 1600 381 234 0 96 chr5 133164149 133164253 -19373006 - PB1D10 SINE Alu -14 103 10 4 1600 264 59 0 0 chr5 133164860 133164894 -19372365 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1600 388 354 91 49 chr5 133164954 133165340 -19371919 - LTR33A_ LTR ERVL -65 466 65 4 1600 1724 137 24 7 chr5 133165471 133165766 -19371493 + ORR1B1 LTR MaLR 1 300 -94 4 1600 392 295 85 45 chr5 133165813 133165847 -19371412 - B4 SINE B4 -84 208 174 4 1600 2619 123 43 20 chr5 133165847 133166245 -19371014 + MTB_Mm LTR MaLR 1 407 0 4 1600 392 295 85 45 chr5 133166245 133166409 -19370850 - B4 SINE B4 -119 173 3 4 1600 254 267 20 91 chr5 133167073 133167172 -19370087 + ID_B1 SINE B4 81 172 -52 4 1600 312 237 9 76 chr5 133167085 133167190 -19370069 + PB1D9 SINE Alu 12 109 -11 4 1600 1389 61 0 0 chr5 133167313 133167672 -19369587 + (CA)n Simple_repeat Simple_repeat 1 359 0 4 1600 393 22 0 0 chr5 133168090 133168136 -19369123 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1600 261 0 0 0 chr5 133168136 133168164 -19369095 + (GA)n Simple_repeat Simple_repeat 1 29 0 4 1600 542 246 7 56 chr5 133168164 133168306 -19368953 - B3A SINE B2 -59 139 5 4 1600 597 272 139 77 chr5 133168350 133168673 -19368586 + ORR1E LTR MaLR 1 343 -16 4 1600 1676 186 96 26 chr5 133168680 133169023 -19368236 - ORR1B2 LTR MaLR 0 367 1 4 1601 934 227 285 0 chr5 133170103 133170398 -19366861 + MTEb LTR MaLR 1 379 0 4 1601 22 0 0 0 chr5 133170506 133170528 -19366731 + AT_rich Low_complexity Low_complexity 1 22 0 4 1601 614 279 36 73 chr5 133170536 133170624 -19366635 + B3 SINE B2 2 81 -135 4 1601 2379 152 6 147 chr5 133170624 133171140 -19366119 - RLTR41 LTR ERV1 -3 443 1 4 1601 614 279 36 73 chr5 133171140 133171251 -19366008 + B3 SINE B2 82 194 -22 4 1601 3217 61 5 0 chr5 133171251 133171647 -19365612 - MTB LTR MaLR -2 398 1 4 1601 614 279 36 73 chr5 133171647 133171666 -19365593 + B3 SINE B2 195 213 -3 4 1601 630 189 168 13 chr5 133172119 133172274 -19364985 + ZP3AR Satellite Satellite 24 202 -10 4 1601 411 232 0 75 chr5 133172385 133172492 -19364767 + PB1D10 SINE Alu 17 115 -2 4 1601 253 258 81 20 chr5 133172501 133172600 -19364659 + ZP3AR Satellite Satellite 53 157 -55 4 1601 339 25 0 0 chr5 133172608 133172648 -19364611 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1601 376 183 14 0 chr5 133173205 133173276 -19363983 - B4A SINE B4 -1 291 220 4 1601 552 239 60 82 chr5 133173292 133173474 -19363785 - B3A SINE B2 -3 195 18 4 1601 223 261 191 21 chr5 133173442 133173630 -19363629 - B4A SINE B4 -72 220 1 4 1601 237 248 0 0 chr5 133173630 133173690 -19363569 + PB1D10 SINE Alu 56 126 -1 4 1601 5257 77 15 44 chr5 133173716 133174635 -19362624 + Lx LINE L1 5407 6298 -356 4 1601 186 71 0 0 chr5 133174752 133174780 -19362479 + (TTTTTG)n Simple_repeat Simple_repeat 6 33 0 4 1601 1193 91 0 11 chr5 133174836 133175014 -19362245 + (TCCC)n Simple_repeat Simple_repeat 4 179 0 4 1601 418 198 0 58 chr5 133175086 133175172 -19362087 - ID4_ SINE ID -2 81 1 4 1601 213 272 133 50 chr5 133175217 133175337 -19361922 - B1F SINE Alu -1 148 19 4 1601 900 150 51 98 chr5 133176014 133176228 -19361031 - URR1A DNA MER1_type -16 210 7 4 1601 396 0 0 0 chr5 133176336 133176380 -19360879 + (TC)n Simple_repeat Simple_repeat 2 45 0 5 1601 931 231 30 20 chr5 133176380 133176571 -19360688 - B4 SINE B4 -14 278 86 5 1601 2262 130 47 3 chr5 133176790 133177152 -19360107 + ORR1C1 LTR MaLR 1 378 0 5 1601 2267 156 220 7 chr5 133177197 133177754 -19359505 - RLTR17 LTR ERVK -16 676 1 5 1601 1036 235 52 10 chr5 133177798 133178086 -19359173 + RMER15 LTR ERVL 276 575 0 5 1601 314 85 21 0 chr5 133178187 133178234 -19359025 - HAL1-3A_ME LINE L1 -835 2023 1976 5 1601 350 321 171 24 chr5 133178279 133178531 -19358728 - B4A SINE B4 -2 290 2 5 1601 180 0 0 0 chr5 133178815 133178835 -19358424 + (TTTC)n Simple_repeat Simple_repeat 3 22 0 5 1601 320 258 94 31 chr5 133178948 133179044 -19358215 - PB1D10 SINE Alu -15 102 1 5 1601 696 204 107 34 chr5 133179048 133179226 -19358033 - ID_B1 SINE B4 -33 191 1 5 1601 263 203 7 0 chr5 133179416 133179474 -19357785 - L1MB4 LINE L1 -266 5917 5857 5 1601 589 171 0 72 chr5 133179923 133180062 -19357197 - MER5C DNA MER1_type -140 173 45 5 1601 3019 118 66 8 chr5 133180236 133180723 -19356536 - Lx LINE L1 0 6654 6140 5 1601 551 229 11 14 chr5 133180723 133180866 -19356393 - B3 SINE B2 -40 176 34 5 1601 834 266 90 31 chr5 133180865 133181121 -19356138 - MTD LTR MaLR -146 273 3 5 1601 348 24 0 0 chr5 133181132 133181173 -19356086 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 5 1601 448 248 48 24 chr5 133181181 133181346 -19355913 - Lx8 LINE L1 -5 7468 7300 5 1601 1114 259 48 60 chr5 133181378 133181797 -19355462 - BGLII_B LTR ERVK -27 414 1 5 1601 497 323 0 6 chr5 133181821 133181983 -19355276 - Lx8 LINE L1 -345 7128 6968 5 1601 221 225 0 149 chr5 133182149 133182243 -19355016 - ID4_ SINE ID -3 80 1 5 1601 1495 31 0 0 chr5 133182173 133182382 -19354877 - ZP3AR Satellite Satellite -153 209 1 5 1601 424 316 65 0 chr5 133182390 133182545 -19354714 + MER2 DNA MER2_type 180 344 -1 5 1601 186 43 0 0 chr5 133182582 133182605 -19354654 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1601 596 230 37 7 chr5 133182615 133182751 -19354508 + ID_B1 SINE B4 51 190 -34 5 1601 398 276 0 49 chr5 133182921 133183043 -19354216 - PB1D10 SINE Alu 0 117 2 5 1601 781 197 43 86 chr5 133183068 133183301 -19353958 - ID_B1 SINE B4 0 224 2 5 1601 220 186 0 0 chr5 133183372 133183415 -19353844 + G-rich Low_complexity Low_complexity 1 43 0 5 1601 267 103 0 0 chr5 133183755 133183794 -19353465 + (TC)n Simple_repeat Simple_repeat 2 40 0 5 1601 23 33 0 0 chr5 133183955 133183985 -19353274 + AT_rich Low_complexity Low_complexity 1 30 0 5 1601 524 284 70 17 chr5 133184018 133184190 -19353069 - B3A SINE B2 -16 182 2 5 1601 235 238 31 31 chr5 133184563 133184628 -19352631 - B4 SINE B4 -26 266 202 5 1601 366 183 0 0 chr5 133184628 133184699 -19352560 + CT-rich Low_complexity Low_complexity 1 71 0 5 1601 1205 96 0 6 chr5 133184713 133184892 -19352367 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 5 1601 991 62 0 58 chr5 133184895 133185032 -19352227 - B1_Mm SINE Alu -18 129 1 5 1601 418 220 259 22 chr5 133185079 133185214 -19352045 - B4A SINE B4 -124 168 2 5 1601 477 327 98 14 chr5 133185214 133185424 -19351835 - B4A SINE B4 -62 230 3 5 1601 316 200 316 17 chr5 133185556 133185673 -19351586 - MTEb LTR MaLR 0 379 228 5 1601 334 295 26 103 chr5 133185930 133186085 -19351174 + MTD LTR MaLR 37 179 -242 5 1601 471 234 46 46 chr5 133186098 133186269 -19350990 + MTD LTR MaLR 199 419 0 5 1601 428 288 0 0 chr5 133186338 133186463 -19350796 + MER121 Unknown Unknown 128 252 -160 5 1601 752 302 60 23 chr5 133187163 133187465 -19349794 - RMER15 LTR ERVL -18 557 245 5 1601 320 256 32 71 chr5 133187504 133187630 -19349629 - RMER15 LTR ERVL -454 121 1 5 1601 580 283 93 48 chr5 133187633 133187945 -19349314 - ORR1E LTR MaLR -19 340 15 5 1601 1209 142 102 10 chr5 133188007 133188213 -19349046 - URR1A DNA MER1_type 0 226 2 5 1601 321 89 0 0 chr5 133188386 133188431 -19348828 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1601 462 273 123 7 chr5 133188443 133188598 -19348661 - B4 SINE B4 -119 173 1 5 1601 243 54 0 196 chr5 133188781 133188919 -19348340 + (GTGTG)n Simple_repeat Simple_repeat 1 111 0 5 1601 216 0 0 0 chr5 133189087 133189111 -19348148 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 5 1601 370 255 94 38 chr5 133189245 133189351 -19347908 + PB1D10 SINE Alu 1 112 -5 5 1601 234 160 0 0 chr5 133189377 133189427 -19347832 + A-rich Low_complexity Low_complexity 4 53 0 5 1601 950 265 119 10 chr5 133189797 133190091 -19347168 + MTD LTR MaLR 4 329 -90 5 1601 200 0 0 91 chr5 133190108 133190141 -19347118 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 5 1601 309 82 32 32 chr5 133190143 133190206 -19347053 + (CAAA)n Simple_repeat Simple_repeat 1 63 0 5 1601 410 114 14 0 chr5 133190461 133190531 -19346728 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1601 776 167 14 0 chr5 133190548 133190686 -19346573 - B1_Mur4 SINE Alu -5 145 6 5 1601 260 305 90 78 chr5 133190747 133190799 -19346460 - B4 SINE B4 -29 263 95 5 1601 408 229 9 87 chr5 133190799 133190914 -19346345 - PB1D9 SINE Alu -5 115 10 5 1601 350 315 0 35 chr5 133191230 133191345 -19345914 + PB1D10 SINE Alu 6 116 -1 5 1601 180 77 0 0 chr5 133191411 133191437 -19345822 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1601 486 320 30 91 chr5 133191565 133191830 -19345429 + B4A SINE B4 44 292 0 5 1601 525 132 48 14 chr5 133191830 133191976 -19345283 + (CA)n Simple_repeat Simple_repeat 1 151 0 5 1601 224 256 0 118 chr5 133191980 133192073 -19345186 + B4A SINE B4 93 174 -118 5 1601 214 328 0 0 chr5 133192132 133192196 -19345063 + (CATA)n Simple_repeat Simple_repeat 4 67 0 5 1601 336 64 0 0 chr5 133192248 133192295 -19344964 + (GA)n Simple_repeat Simple_repeat 2 48 0 5 1601 519 259 0 0 chr5 133192915 133193027 -19344232 - PB1D10 SINE Alu 0 117 6 5 1601 561 120 0 0 chr5 133193036 133193128 -19344131 + (TG)n Simple_repeat Simple_repeat 2 93 0 5 1601 315 0 0 0 chr5 133193191 133193226 -19344033 + (TTA)n Simple_repeat Simple_repeat 3 37 0 5 1601 540 239 0 0 chr5 133193235 133193398 -19343861 + (TG)n Simple_repeat Simple_repeat 2 164 0 5 1601 480 294 70 32 chr5 133193399 133193557 -19343702 - RSINE1 SINE B4 0 165 2 5 1601 549 271 43 0 chr5 133193557 133193680 -19343579 - B4 SINE B4 -62 230 102 5 1601 210 150 0 0 chr5 133194116 133194156 -19343103 + (T)n Simple_repeat Simple_repeat 1 40 0 5 1601 550 297 7 0 chr5 133194770 133194908 -19342351 - ZP3AR Satellite Satellite -32 180 42 5 1601 930 140 8 68 chr5 133194918 133195155 -19342104 - Lx9 LINE L1 -1 7643 7421 5 1601 389 311 87 67 chr5 133195155 133195600 -19341659 + MLT1F LTR MaLR 11 496 -52 5 1601 232 304 61 61 chr5 133196329 133196427 -19340832 + MLT1A1 LTR MaLR 24 121 -287 5 1601 238 172 50 0 chr5 133196959 133197058 -19340201 + (TG)n Simple_repeat Simple_repeat 1 104 0 5 1601 1222 143 5 14 chr5 133197069 133197281 -19339978 + URR1B DNA MER1_type 16 225 0 5 1601 351 0 0 0 chr5 133197370 133197409 -19339850 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1601 234 317 0 24 chr5 133197410 133197533 -19339726 + (TATATG)n Simple_repeat Simple_repeat 4 123 0 5 1601 831 163 0 0 chr5 133197552 133197718 -19339541 + CT-rich Low_complexity Low_complexity 1 166 0 5 1601 387 306 8 32 chr5 133197882 133198007 -19339252 - RMER20B LTR ERVK -24 603 482 5 1601 269 281 12 24 chr5 133198295 133198379 -19338880 - RLTR26 LTR ERVK -368 274 192 5 1601 785 327 30 4 chr5 133198562 133198829 -19338430 + B4A SINE B4 17 290 -2 5 1601 512 125 0 10 chr5 133198832 133198929 -19338330 + (CA)n Simple_repeat Simple_repeat 2 97 0 5 1601 254 262 11 77 chr5 133198982 133199073 -19338186 + MIR SINE MIR 28 112 -150 5 1601 479 198 9 45 chr5 133199123 133199234 -19338025 - PB1D10 SINE Alu -9 108 2 5 1601 198 208 21 0 chr5 133199277 133199325 -19337934 + MIRc SINE MIR 175 223 -45 5 1601 314 300 63 14 chr5 133199529 133199671 -19337588 - B1F SINE Alu 0 149 1 5 1601 1102 255 35 10 chr5 133199701 133199990 -19337269 + MTEb LTR MaLR 84 379 0 5 1601 351 0 0 0 chr5 133200043 133200082 -19337177 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1601 453 115 0 0 chr5 133200082 133200296 -19336963 + (GA)n Simple_repeat Simple_repeat 1 214 0 5 1601 238 183 50 0 chr5 133200298 133200358 -19336901 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 5 1601 245 256 61 0 chr5 133200903 133200985 -19336274 + CT-rich Low_complexity Low_complexity 4 90 0 5 1601 309 272 24 12 chr5 133200985 133201067 -19336192 - ID4_ SINE ID 0 83 1 5 1601 354 248 0 47 chr5 133201075 133201126 -19336133 - BC1_Mm scRNA scRNA -30 122 2 5 1601 366 167 0 53 chr5 133201126 133201202 -19336057 - ID SINE ID -151 73 2 5 1601 1046 226 7 7 chr5 133201155 133201437 -19335822 - ZP3AR Satellite Satellite -21 282 1 5 1601 382 222 212 0 chr5 133201703 133201802 -19335457 + MER57D LTR ERV1 6 125 -286 5 1601 914 265 55 110 chr5 133201835 133202234 -19335025 - MTE2a LTR MaLR -2 377 1 5 1601 266 330 21 0 chr5 133202604 133202698 -19334561 - ZP3AR Satellite Satellite -73 139 44 5 1601 735 120 0 0 chr5 133202699 133202816 -19334443 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 5 1601 340 288 148 23 chr5 133202817 133202945 -19334314 - B1F SINE Alu -5 144 1 5 1601 441 0 0 0 chr5 133202995 133203044 -19334215 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 5 1601 288 0 0 0 chr5 133203139 133203171 -19334088 + (TC)n Simple_repeat Simple_repeat 2 33 0 5 1601 528 16 0 0 chr5 133203171 133203231 -19334028 + (TA)n Simple_repeat Simple_repeat 2 62 0 6 1601 383 175 0 16 chr5 133203289 133203353 -19333906 - URR1A DNA MER1_type -155 71 9 6 1601 391 319 43 16 chr5 133203357 133203545 -19333714 - ORR1E LTR MaLR -166 193 1 6 1601 387 0 0 0 chr5 133203556 133203599 -19333660 + (CAAG)n Simple_repeat Simple_repeat 1 43 0 6 1601 1905 303 72 34 chr5 133203602 133204272 -19332987 + Lx8 LINE L1 6629 7323 -150 6 1601 283 215 129 0 chr5 133205196 133205289 -19331970 + PB1D7 SINE Alu 9 113 -7 6 1601 36059 36 0 0 chr5 133205300 133210524 -19326735 + L1Md_T LINE L1 268 5589 -297 6 1601 9122 7 0 0 chr5 133210524 133211520 -19325739 + L1Md_T LINE L1 5590 6585 0 6 1601 3485 94 35 19 chr5 133211516 133212037 -19325222 + L1_Mus1 LINE L1 6039 6567 0 6 1601 777 239 63 24 chr5 133212511 133212717 -19324542 + B4A SINE B4 2 215 -77 6 1601 1671 178 124 165 chr5 133212717 133212902 -19324357 - RMER20B LTR ERVK -24 603 461 6 1601 1068 96 0 0 chr5 133212902 133213079 -19324180 + (GA)n Simple_repeat Simple_repeat 2 178 0 6 1601 1671 178 124 165 chr5 133213079 133213101 -19324158 - RMER20B LTR ERVK -167 460 460 6 1601 1074 100 0 0 chr5 133213101 133213281 -19323978 + (GA)n Simple_repeat Simple_repeat 1 180 0 6 1601 1671 178 124 165 chr5 133213281 133213691 -19323568 - RMER20B LTR ERVK -167 460 10 6 1601 1875 120 32 3 chr5 133213808 133214117 -19323142 - ORR1A3 LTR MaLR -8 318 1 6 1601 350 272 39 0 chr5 133214136 133214239 -19323020 - L1_Rod LINE L1 -72 5775 5669 6 1601 917 254 61 97 chr5 133215466 133215859 -19321400 - MTE2a LTR MaLR 0 379 1 6 1601 2259 239 18 40 chr5 133215969 133216540 -19320719 + Lx5 LINE L1 6473 7030 -20 6 1601 234 0 0 0 chr5 133216567 133216593 -19320666 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6 1601 772 265 65 36 chr5 133216997 133217244 -19320015 + B4 SINE B4 2 255 -37 6 1601 381 238 0 0 chr5 133217271 133217435 -19319824 + (CA)n Simple_repeat Simple_repeat 1 164 0 6 1601 354 121 0 0 chr5 133217437 133217503 -19319756 + (GA)n Simple_repeat Simple_repeat 1 66 0 6 1601 457 269 0 0 chr5 133218098 133218206 -19319053 + B4A SINE B4 34 141 -151 6 1601 759 52 0 0 chr5 133218356 133218452 -19318807 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 1601 1066 217 33 0 chr5 133218478 133218924 -19318335 - ZP3AR Satellite Satellite -21 460 1 6 1601 21 0 0 0 chr5 133219339 133219360 -19317899 + AT_rich Low_complexity Low_complexity 1 21 0 6 1601 246 62 0 0 chr5 133219570 133219602 -19317657 + (CAAA)n Simple_repeat Simple_repeat 3 34 0 6 1601 906 240 60 71 chr5 133219604 133219947 -19317312 - MTE2a LTR MaLR -44 375 25 6 1601 1256 226 84 18 chr5 133219951 133220294 -19316965 + ORR1D2 LTR MaLR 5 370 0 6 1601 801 194 0 0 chr5 133220358 133220538 -19316721 + CT-rich Low_complexity Low_complexity 1 180 0 6 1601 982 109 14 7 chr5 133220540 133220687 -19316572 - B1_Mus1 SINE Alu 0 148 1 6 1601 466 255 0 9 chr5 133220739 133220846 -19316413 + PB1D10 SINE Alu 12 117 0 6 1601 1061 258 110 27 chr5 133221317 133221691 -19315568 - MTD LTR MaLR -14 405 1 6 1601 292 271 0 0 chr5 133221858 133221928 -19315331 + RMER30 DNA MER1_type 133 202 0 6 1601 720 80 0 0 chr5 133222115 133222215 -19315044 + (TAGA)n Simple_repeat Simple_repeat 4 103 0 6 1601 266 299 184 59 chr5 133222382 133222638 -19314621 - B4 SINE B4 -3 289 2 6 1601 23 0 0 0 chr5 133223565 133223588 -19313671 + AT_rich Low_complexity Low_complexity 1 23 0 6 1601 406 361 63 24 chr5 133223979 133224186 -19313073 - B4A SINE B4 -2 290 76 6 1601 207 348 41 50 chr5 133224289 133224410 -19312849 + MIR SINE MIR 1 120 -142 6 1601 1140 41 0 6 chr5 133224522 133224692 -19312567 + ZP3AR Satellite Satellite 43 211 -1 6 1601 191 0 219 0 chr5 133225246 133225310 -19311949 + (CAAAC)n Simple_repeat Simple_repeat 2 79 0 6 1601 246 294 58 10 chr5 133225407 133225510 -19311749 - PB1D10 SINE Alu 0 120 13 6 1601 363 178 0 0 chr5 133225581 133225682 -19311577 + GA-rich Low_complexity Low_complexity 2 102 0 6 1601 1026 0 0 0 chr5 133225969 133226083 -19311176 + (TTTCC)n Simple_repeat Simple_repeat 3 116 0 6 1601 575 257 0 45 chr5 133226083 133226238 -19311021 - ID_B1 SINE B4 -5 219 72 6 1601 1292 119 0 64 chr5 133226903 133226930 -19310329 - ZP3AR Satellite Satellite -148 25 1 6 1601 350 253 13 0 chr5 133226930 133227009 -19310250 - ID4 SINE ID -3 80 1 6 1601 1401 108 9 12 chr5 133227009 133227420 -19309839 - ZP3AR Satellite Satellite -11 410 1 6 1601 681 240 39 33 chr5 133228482 133228663 -19308596 + B3A SINE B2 1 182 -16 6 1601 916 246 60 148 chr5 133228987 133229387 -19307872 - MTE2a LTR MaLR -14 365 1 6 1601 307 294 52 151 chr5 133229546 133229718 -19307541 - B4 SINE B4 -12 280 126 6 1601 800 189 123 51 chr5 133229756 133229903 -19307356 - B3 SINE B2 -5 211 50 6 1601 4913 107 52 24 chr5 133229903 133230243 -19307016 + RMER17D2 LTR ERVK 1 353 -456 6 1601 810 0 0 0 chr5 133230243 133230333 -19306926 + (TCTCC)n Simple_repeat Simple_repeat 1 90 0 6 1601 1432 11 23 0 chr5 133230333 133230509 -19306750 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 6 1601 4913 107 52 24 chr5 133230509 133230954 -19306305 + RMER17D2 LTR ERVK 354 808 -1 6 1601 800 189 123 51 chr5 133230954 133231001 -19306258 - B3 SINE B2 -167 49 3 6 1601 268 279 58 11 chr5 133231001 133231085 -19306174 - B4A SINE B4 -202 90 3 6 1601 340 275 69 14 chr5 133231090 133231234 -19306025 + L1MA6 LINE L1 6125 6276 -24 6 1601 255 332 174 37 chr5 133231320 133231561 -19305698 + B4A SINE B4 3 276 -16 6 1601 456 19 0 0 chr5 133231583 133231636 -19305623 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1601 1535 142 4 0 chr5 133232609 133232834 -19304425 + URR1A DNA MER1_type 1 226 0 6 1601 780 11 0 0 chr5 133233067 133233156 -19304103 + (GA)n Simple_repeat Simple_repeat 1 89 0 6 1601 220 288 106 0 chr5 133233895 133233961 -19303298 - ID2 SINE ID -9 74 2 6 1601 981 165 33 0 chr5 133233922 133234104 -19303155 - ZP3AR Satellite Satellite -24 188 1 6 1601 764 118 0 23 chr5 133234171 133234301 -19302958 - URR1B DNA MER1_type -6 219 93 6 1601 665 161 32 0 chr5 133234311 133234435 -19302824 + B1_Mur4 SINE Alu 22 149 -1 6 1601 26 0 0 0 chr5 133234454 133234480 -19302779 + AT_rich Low_complexity Low_complexity 1 26 0 6 1601 550 116 137 0 chr5 133234480 133234575 -19302684 - URR1B DNA MER1_type -118 107 1 6 1601 231 211 0 37 chr5 133235207 133235261 -19301998 + CT-rich Low_complexity Low_complexity 2 53 0 6 1601 296 260 13 0 chr5 133235261 133235338 -19301921 - ID_B1 SINE B4 -4 220 143 6 1601 872 255 114 8 chr5 133235381 133235626 -19301633 - B4 SINE B4 -1 291 21 6 1601 462 233 30 23 chr5 133235668 133235800 -19301459 - ID_B1 SINE B4 -87 137 5 6 1601 487 198 0 0 chr5 133235854 133235940 -19301319 + B1_Mur2 SINE Alu 63 148 -1 6 1601 697 186 0 8 chr5 133235985 133236110 -19301149 - B3 SINE B2 -92 124 1 6 1601 417 20 0 0 chr5 133236271 133236321 -19300938 + (CTAA)n Simple_repeat Simple_repeat 3 52 0 6 1601 526 251 79 35 chr5 133236563 133236765 -19300494 + RLTR42-int LTR ERVK 1190 1400 -4122 6 1601 360 254 77 0 chr5 133237347 133237477 -19299782 + MIR SINE MIR 116 255 -7 6 1601 230 292 7 0 chr5 133237647 133237791 -19299468 + (TG)n Simple_repeat Simple_repeat 1 145 0 6 1601 260 230 0 35 chr5 133237796 133237940 -19299319 + (TATATG)n Simple_repeat Simple_repeat 2 140 0 6 1601 209 98 24 0 chr5 133237957 133237998 -19299261 + (GA)n Simple_repeat Simple_repeat 1 42 0 6 1601 733 279 90 19 chr5 133238003 133238270 -19298989 - B4 SINE B4 -4 288 3 6 1601 269 262 82 12 chr5 133238327 133238412 -19298847 + ORR1E LTR MaLR 1 91 -288 6 1601 378 256 112 37 chr5 133238502 133238750 -19298509 + ORR1E LTR MaLR 97 379 0 6 1601 203 105 53 0 chr5 133239292 133239330 -19297929 + CT-rich Low_complexity Low_complexity 4 43 0 6 1601 382 206 92 67 chr5 133239364 133239497 -19297762 - L1M2 LINE L1 -376 5780 5645 6 1601 929 224 86 19 chr5 133239817 133240026 -19297233 + ID_B1 SINE B4 2 224 0 6 1601 524 225 0 29 chr5 133240045 133240150 -19297109 + PB1D10 SINE Alu 6 107 -10 6 1601 488 16 0 16 chr5 133240174 133240236 -19297023 + (GAAA)n Simple_repeat Simple_repeat 1 61 0 6 1601 1212 180 19 5 chr5 133240372 133240584 -19296675 - B3 SINE B2 0 216 2 6 1601 261 0 0 0 chr5 133240648 133240677 -19296582 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 6 1601 742 52 276 0 chr5 133240713 133240829 -19296430 - B1_Mus1 SINE Alu 0 148 1 6 1601 988 289 30 60 chr5 133240923 133241291 -19295968 + ORR1E LTR MaLR 1 357 -2 6 1601 358 298 30 5 chr5 133241291 133241395 -19295864 - B3A SINE B2 -95 100 1 6 1601 315 260 14 0 chr5 133242118 133242191 -19295068 - ID2 SINE ID -8 75 2 6 1601 1431 86 0 2 chr5 133242192 133242546 -19294713 - ZP3AR Satellite Satellite -10 353 1 6 1601 369 282 48 21 chr5 133242607 133242752 -19294507 - B1F1 SINE Alu 0 149 1 6 1601 806 363 113 11 chr5 133242814 133243282 -19293977 + L4 LINE RTE 836 1351 -678 6 1601 441 205 142 25 chr5 133243312 133243432 -19293827 - B1F SINE Alu -15 134 1 6 1601 198 128 0 0 chr5 133243505 133243544 -19293715 + (ATTG)n Simple_repeat Simple_repeat 2 40 0 6 1601 2137 288 39 44 chr5 133243559 133244423 -19292836 - Lx9 LINE L1 0 7473 6605 6 1601 216 294 0 0 chr5 133244469 133244588 -19292671 + (CA)n Simple_repeat Simple_repeat 1 119 0 6 1601 473 296 91 38 chr5 133244626 133244812 -19292447 - Lx9 LINE L1 -898 6746 6551 6 1601 227 311 16 0 chr5 133244831 133244892 -19292367 - RSINE1 SINE B4 -100 65 4 6 1601 216 294 0 0 chr5 133245057 133245176 -19292083 + (CA)n Simple_repeat Simple_repeat 1 119 0 6 1601 385 293 128 29 chr5 133245304 133245550 -19291709 - MLT2B4 LTR ERVL -74 482 157 6 1601 313 259 40 112 chr5 133245566 133245825 -19291434 - MTEb LTR MaLR -15 364 95 6 1601 4323 97 0 48 chr5 133245976 133246607 -19290652 + MT2B LTR ERVL 1 601 0 6 1601 333 0 0 0 chr5 133247196 133247233 -19290026 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1601 278 238 23 35 chr5 133247367 133247454 -19289805 - MLT2B4 LTR ERVL -422 134 49 6 1601 1069 253 189 5 chr5 133247607 133247993 -19289266 + MTE2b-int LTR MaLR 1124 1580 0 7 1601 1072 255 102 33 chr5 133247993 133248297 -19288962 + MTE2b LTR MaLR 1 325 -54 7 1601 2202 203 22 174 chr5 133248429 133249149 -19288110 - RMER19C LTR ERVK 0 611 1 7 1601 1133 272 25 0 chr5 133249620 133249903 -19287356 + B4 SINE B4 1 290 -2 7 1601 327 25 0 0 chr5 133249963 133250003 -19287256 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1601 516 277 8 0 chr5 133250540 133250659 -19286600 + RSINE1 SINE B4 2 121 -44 7 1601 516 132 0 0 chr5 133250755 133250838 -19286421 + (CA)n Simple_repeat Simple_repeat 2 84 0 7 1601 684 349 27 4 chr5 133250850 133251106 -19286153 - B4A SINE B4 -30 262 1 7 1601 342 349 57 60 chr5 133251686 133251914 -19285345 - MLT1D LTR MaLR -170 335 107 7 1601 709 255 5 105 chr5 133251914 133252133 -19285126 - B3A SINE B2 0 198 2 7 1601 342 349 57 60 chr5 133252133 133252169 -19285090 - MLT1D LTR MaLR -399 106 72 7 1601 622 247 13 20 chr5 133252285 133252434 -19284825 + RSINE1 SINE B4 3 150 -15 7 1601 510 42 20 41 chr5 133252929 133253027 -19284232 + (TA)n Simple_repeat Simple_repeat 1 96 0 7 1601 532 273 8 0 chr5 133253040 133253161 -19284098 + RSINE1 SINE B4 11 132 -33 7 1601 279 130 0 36 chr5 133253267 133253323 -19283936 - B4A SINE B4 -56 236 183 7 1601 410 330 60 43 chr5 133253408 133253690 -19283569 + B4A SINE B4 2 288 -4 7 1601 227 196 0 21 chr5 133253720 133253767 -19283492 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1601 405 0 0 0 chr5 133253818 133253863 -19283396 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 7 1601 277 267 11 22 chr5 133254029 133254121 -19283138 - MIR SINE MIR -25 237 147 7 1601 811 257 16 16 chr5 133254154 133254336 -19282923 - B3A SINE B2 -16 182 1 7 1601 852 312 21 11 chr5 133254452 133254734 -19282525 + B4 SINE B4 4 288 -4 7 1601 1194 83 0 0 chr5 133254739 133255040 -19282219 + (CA)n Simple_repeat Simple_repeat 1 301 0 7 1601 447 19 0 0 chr5 133255040 133255091 -19282168 + (GA)n Simple_repeat Simple_repeat 2 53 0 7 1601 435 92 0 0 chr5 133255139 133255204 -19282055 + (CA)n Simple_repeat Simple_repeat 1 65 0 7 1601 241 64 20 41 chr5 133255306 133255355 -19281904 + (TGGGGG)n Simple_repeat Simple_repeat 2 49 0 7 1601 237 276 24 106 chr5 133255656 133255741 -19281518 - MTEa LTR MaLR -280 99 22 7 1601 1036 71 50 0 chr5 133255752 133255892 -19281367 + B1_Mm SINE Alu 1 147 0 7 1601 1410 254 54 25 chr5 133255935 133256260 -19280999 - MTE2b LTR MaLR 0 379 43 7 1601 1506 133 0 13 chr5 133256260 133256488 -19280771 + URR1B DNA MER1_type 1 225 0 7 1601 1410 254 54 25 chr5 133256488 133256530 -19280729 - MTE2b LTR MaLR -337 42 1 7 1601 228 217 0 0 chr5 133256651 133256697 -19280562 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 7 1601 182 220 20 20 chr5 133257032 133257083 -19280176 - MER5B DNA MER1_type -123 55 5 7 1601 1099 280 78 23 chr5 133257684 133258028 -19279231 + MTEb LTR MaLR 15 377 -2 7 1601 763 264 5 44 chr5 133258482 133258688 -19278571 - B3A SINE B2 0 198 1 7 1601 640 213 14 49 chr5 133258710 133258853 -19278406 - B1_Mur2 SINE Alu 0 149 12 7 1601 306 247 20 51 chr5 133259113 133259211 -19278048 - MLT1A LTR MaLR -27 338 244 7 1601 351 0 0 0 chr5 133259280 133259319 -19277940 + (TTA)n Simple_repeat Simple_repeat 1 39 0 7 1601 4956 40 19 8 chr5 133259319 133259947 -19277312 - MusHAL1 LINE L1 -14 2698 2064 7 1601 335 280 11 0 chr5 133259984 133260075 -19277184 - MLT1A LTR MaLR -296 112 21 7 1601 432 0 0 0 chr5 133260168 133260216 -19277043 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1601 181 344 42 21 chr5 133261530 133261625 -19275634 + L2 LINE L2 2484 2580 -839 7 1601 935 241 123 38 chr5 133262411 133262752 -19274507 - ORR1D2 LTR MaLR 0 370 1 7 1601 557 223 26 21 chr5 133263504 133263701 -19273558 - L1MA6 LINE L1 -373 5927 5685 7 1601 442 353 5 70 chr5 133264013 133264136 -19273123 + B3A SINE B2 25 147 -51 7 1601 369 0 0 0 chr5 133264136 133264177 -19273082 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1601 315 0 0 0 chr5 133264177 133264211 -19273048 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1601 442 353 5 70 chr5 133264211 133264272 -19272987 + B3A SINE B2 148 197 -1 7 1601 532 361 0 28 chr5 133264330 133264541 -19272718 - RMER15 LTR ERVL -47 528 324 7 1601 1565 49 16 0 chr5 133264587 133264772 -19272487 + B2_Mm2 SINE B2 2 189 -6 7 1601 514 273 0 0 chr5 133264778 133264899 -19272360 + ID_B1 SINE B4 93 213 -11 7 1601 309 62 30 30 chr5 133264930 133264996 -19272263 + (CAAAAA)n Simple_repeat Simple_repeat 1 66 0 7 1601 10125 60 43 19 chr5 133265013 133266464 -19270795 + MusHAL1 LINE L1 793 2278 -434 7 1601 303 294 75 93 chr5 133266503 133266901 -19270358 + HAL1 LINE L1 1267 1657 -850 7 1601 3049 52 18 17 chr5 133266870 133267284 -19269975 + L1M4 LINE L1 3466 3857 -57 7 1601 261 0 0 0 chr5 133267371 133267400 -19269859 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1601 279 0 0 0 chr5 133267488 133267519 -19269740 + (CA)n Simple_repeat Simple_repeat 2 32 0 7 1601 612 282 13 13 chr5 133267532 133267683 -19269576 - B3A SINE B2 -46 152 2 7 1601 625 254 65 202 chr5 133267685 133268100 -19269159 + MTE2b LTR MaLR 4 361 -18 7 1601 593 271 0 14 chr5 133268861 133269003 -19268256 - B1F2 SINE Alu -8 141 2 7 1601 218 267 0 0 chr5 133269225 133269270 -19267989 + (CAT)n Simple_repeat Simple_repeat 1 45 0 7 1601 546 241 59 15 chr5 133269281 133269416 -19267843 - RSINE1 SINE B4 -23 142 2 7 1601 262 185 19 0 chr5 133269672 133269726 -19267533 - Tigger14a DNA MER2_type -154 170 116 7 1601 21 0 0 0 chr5 133269870 133269891 -19267368 + AT_rich Low_complexity Low_complexity 1 21 0 7 1601 671 261 0 18 chr5 133270141 133270309 -19266950 + RSINE1 SINE B4 1 165 0 7 1601 909 280 69 33 chr5 133270609 133270941 -19266318 - Lx8 LINE L1 -143 7330 6987 7 1601 503 274 12 61 chr5 133271199 133271362 -19265897 - B4 SINE B4 -134 158 4 7 1601 273 245 124 31 chr5 133271441 133271466 -19265793 + B4A SINE B4 62 95 -197 7 1601 427 169 108 0 chr5 133271466 133271549 -19265710 + B1F SINE Alu 2 93 -56 7 1601 273 254 15 8 chr5 133271551 133271682 -19265577 + (TA)n Simple_repeat Simple_repeat 1 132 0 7 1601 462 114 0 0 chr5 133271693 133271772 -19265487 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 7 1601 262 225 24 48 chr5 133271790 133271874 -19265385 + GA-rich Low_complexity Low_complexity 3 84 0 7 1601 792 228 130 61 chr5 133272421 133272683 -19264576 - MTC LTR MaLR 0 419 149 7 1601 1922 138 86 3 chr5 133272697 133273047 -19264212 + ORR1B1 LTR MaLR 16 394 0 7 1601 1257 230 95 7 chr5 133273366 133273672 -19263587 - MTEa LTR MaLR -11 368 36 7 1601 242 194 15 0 chr5 133273693 133273760 -19263499 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1601 236 305 20 50 chr5 133273804 133273904 -19263355 - B4A SINE B4 -10 282 186 7 1601 317 271 56 103 chr5 133274551 133274658 -19262601 + ZP3AR Satellite Satellite 47 148 -64 7 1601 282 272 12 47 chr5 133274658 133274743 -19262516 + ID4 SINE ID 1 82 -1 7 1601 1240 255 8 60 chr5 133274864 133275244 -19262015 + MTE2a LTR MaLR 5 364 -15 7 1601 537 303 66 0 chr5 133275260 133275412 -19261847 + B4 SINE B4 19 180 -112 7 1601 1152 151 18 28 chr5 133275411 133275629 -19261630 + URR1B DNA MER1_type 10 225 0 7 1601 292 263 0 38 chr5 133275629 133275708 -19261551 + B4 SINE B4 178 253 -39 7 1601 637 288 6 38 chr5 133275786 133275945 -19261314 + RSINE1 SINE B4 12 165 0 7 1601 595 335 49 8 chr5 133276233 133276498 -19260761 - L3 LINE CR1 -590 3899 3624 7 1601 448 244 93 23 chr5 133276608 133276760 -19260499 + ID_B1 SINE B4 60 223 -69 7 1601 459 277 90 21 chr5 133276766 133276910 -19260349 + RSINE1 SINE B4 2 155 -10 7 1601 405 95 0 0 chr5 133276910 133276973 -19260286 + (GA)n Simple_repeat Simple_repeat 1 63 0 7 1601 303 240 120 40 chr5 133277122 133277222 -19260037 + B1F SINE Alu 42 149 0 7 1601 280 274 14 0 chr5 133277245 133277318 -19259941 + ID_B1 SINE B4 96 169 -55 7 1601 183 129 0 0 chr5 133277333 133277364 -19259895 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 7 1601 590 305 75 19 chr5 133277544 133277758 -19259501 + 7SK RNA RNA 2 227 -104 7 1601 286 302 85 17 chr5 133277811 133277929 -19259330 - MTD LTR MaLR -1 418 293 7 1601 282 266 49 99 chr5 133277914 133278056 -19259203 - MTD LTR MaLR -40 339 205 7 1601 735 288 25 50 chr5 133278050 133278331 -19258928 - ORR1E LTR MaLR -85 274 1 7 1601 273 57 0 0 chr5 133279174 133279209 -19258050 + (GA)n Simple_repeat Simple_repeat 1 35 0 7 1601 356 277 29 53 chr5 133279213 133279433 -19257826 - MTEa LTR MaLR -2 377 155 7 1601 246 320 92 46 chr5 133279452 133279583 -19257676 + MTE2a LTR MaLR 1 137 -242 7 1601 701 320 51 55 chr5 133279554 133279689 -19257570 + MT2A LTR ERVL 108 243 -290 7 1601 248 53 26 0 chr5 133279689 133279727 -19257532 + (CTG)n Simple_repeat Simple_repeat 1 39 0 7 1601 701 320 51 55 chr5 133279727 133279902 -19257357 + MT2A LTR ERVL 244 417 -116 7 1601 284 300 44 11 chr5 133279921 133280012 -19257247 + MT2A LTR ERVL 348 441 -92 7 1601 848 268 127 12 chr5 133280075 133280328 -19256931 - B4 SINE B4 -5 287 6 7 1601 875 272 119 11 chr5 133280903 133281163 -19256096 - B4 SINE B4 -2 290 3 7 1601 247 260 13 27 chr5 133281244 133281319 -19255940 + CT-rich Low_complexity Low_complexity 5 78 0 7 1601 381 252 136 0 chr5 133281543 133281646 -19255613 + PB1D7 SINE Alu 1 117 -3 7 1601 477 0 0 0 chr5 133281822 133281875 -19255384 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1601 508 192 0 23 chr5 133281875 133282003 -19255256 + (CATA)n Simple_repeat Simple_repeat 1 125 0 7 1601 1259 118 113 0 chr5 133282321 133282524 -19254735 - URR1A DNA MER1_type 0 226 1 7 1601 369 109 0 0 chr5 133282988 133283043 -19254216 + (CA)n Simple_repeat Simple_repeat 2 56 0 8 1601 220 297 13 13 chr5 133283111 133283186 -19254073 - ID4 SINE ID -1 82 8 8 1601 516 320 105 7 chr5 133283177 133283377 -19253882 - ZP3AR Satellite Satellite -2 219 1 8 1601 578 99 11 0 chr5 133283895 133283986 -19253273 + (TG)n Simple_repeat Simple_repeat 2 93 0 8 1601 800 252 121 4 chr5 133283996 133284227 -19253032 - B4 SINE B4 -32 260 3 8 1601 591 222 138 36 chr5 133284467 133284663 -19252596 + B3 SINE B2 1 216 0 8 1601 547 238 45 33 chr5 133284719 133284922 -19252337 - B3 SINE B2 0 195 4 8 1601 211 182 0 0 chr5 133285022 133285055 -19252204 + polypyrimidine Low_complexity Low_complexity 2 34 0 8 1601 650 250 51 17 chr5 133285066 133285241 -19252018 - B3A SINE B2 -16 182 2 8 1601 223 267 30 91 chr5 133285738 133285749 -19251510 + PB1D9 SINE Alu 27 115 -1 8 1601 429 202 48 0 chr5 133285749 133285833 -19251426 + ID_B1 SINE B4 132 219 -5 8 1601 198 71 0 0 chr5 133286045 133286073 -19251186 + (TC)n Simple_repeat Simple_repeat 1 28 0 8 1601 804 282 105 56 chr5 133286245 133286615 -19250644 - MTE2a LTR MaLR -16 403 30 8 1601 820 220 206 16 chr5 133286615 133286925 -19250334 + ORR1D2 LTR MaLR 2 370 0 8 1601 509 308 113 53 chr5 133286925 133286952 -19250307 - MTE2a LTR MaLR -390 29 1 8 1601 659 312 6 0 chr5 133287498 133287658 -19249601 + RSINE1 SINE B4 2 162 -3 8 1601 306 0 0 0 chr5 133287671 133287705 -19249554 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1601 955 236 83 114 chr5 133287705 133288190 -19249069 + RMER13A LTR ERVK 1 519 -389 8 1601 667 154 45 30 chr5 133288417 133288551 -19248708 - B1_Mur4 SINE Alu -7 143 8 8 1601 339 25 0 0 chr5 133288631 133288671 -19248588 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1601 1134 0 0 0 chr5 133288675 133288801 -19248458 + (GGGAGA)n Simple_repeat Simple_repeat 2 127 0 8 1601 205 274 121 43 chr5 133288807 133288948 -19248311 + L3 LINE CR1 3710 3861 -628 8 1601 489 17 0 0 chr5 133289226 133289284 -19247975 + (CA)n Simple_repeat Simple_repeat 2 59 0 8 1601 651 185 4 206 chr5 133289386 133289486 -19247773 - B3A SINE B2 -1 197 119 8 1601 1137 88 0 0 chr5 133289486 133289634 -19247625 + B1_Mus1 SINE Alu 1 148 0 8 1601 651 185 4 206 chr5 133289634 133289771 -19247488 - B3A SINE B2 -80 118 8 8 1601 386 302 22 37 chr5 133289777 133289911 -19247348 - ID_B1 SINE B4 -65 159 28 8 1601 265 122 0 0 chr5 133289930 133289971 -19247288 + MER21B LTR ERV1 276 316 -547 8 1601 366 256 179 43 chr5 133289973 133290157 -19247102 + B3 SINE B2 2 210 -6 8 1601 408 325 82 41 chr5 133290160 133290330 -19246929 + B3A SINE B2 6 182 -16 8 1601 340 317 50 8 chr5 133290422 133290543 -19246716 + ORR1E LTR MaLR 1 126 -233 8 1601 1056 300 43 26 chr5 133290542 133290960 -19246299 + MER21B LTR ERV1 375 799 -64 8 1601 353 235 306 8 chr5 133291031 133291283 -19245976 + Arthur1 DNA Tip100 3386 3712 -235 8 1601 270 311 28 0 chr5 133291285 133291391 -19245868 + BC1_Mm scRNA scRNA 2 110 -42 8 1601 262 67 44 0 chr5 133291473 133291518 -19245741 + (CAA)n Simple_repeat Simple_repeat 2 48 0 8 1601 241 230 11 33 chr5 133291536 133291626 -19245633 + (CAA)n Simple_repeat Simple_repeat 2 89 0 8 1601 1392 254 39 14 chr5 133291801 133292160 -19245099 - MTE2a LTR MaLR -11 368 1 8 1601 705 272 113 37 chr5 133292569 133292924 -19244335 + MTD LTR MaLR 10 391 -28 8 1601 206 139 0 27 chr5 133292930 133292967 -19244292 + GA-rich Low_complexity Low_complexity 1 36 0 8 1601 353 259 0 0 chr5 133293074 133293159 -19244100 + B4 SINE B4 207 291 -1 8 1601 344 216 0 0 chr5 133293181 133293255 -19244004 + HAL1-3A_ME LINE L1 1976 2049 -809 8 1601 229 143 0 75 chr5 133293255 133293308 -19243951 + GA-rich Low_complexity Low_complexity 3 51 0 8 1601 223 276 19 9 chr5 133293701 133293807 -19243452 + G-rich Low_complexity Low_complexity 5 111 0 8 1601 1075 247 94 60 chr5 133293945 133294328 -19242931 + MTD LTR MaLR 10 405 -14 8 1601 516 208 87 8 chr5 133294456 133294582 -19242677 + B1_Mus1 SINE Alu 13 148 0 8 1601 24 0 0 0 chr5 133294990 133295014 -19242245 + AT_rich Low_complexity Low_complexity 1 24 0 8 1601 798 246 25 25 chr5 133295023 133295219 -19242040 - B3A SINE B2 -1 197 2 8 1601 22 0 0 0 chr5 133295222 133295244 -19242015 + AT_rich Low_complexity Low_complexity 1 22 0 8 1601 408 216 0 22 chr5 133295247 133295337 -19241922 - ID_B1 SINE B4 -34 190 103 8 1601 184 296 0 0 chr5 133295342 133295396 -19241863 - MIRm SINE MIR -199 77 24 8 1601 34 0 0 0 chr5 133295497 133295531 -19241728 + AT_rich Low_complexity Low_complexity 1 34 0 8 1601 854 248 60 170 chr5 133295958 133295996 -19241263 + RMER5 LTR ERV1 33 64 -470 8 1601 703 247 0 7 chr5 133295996 133296143 -19241116 + B1_Mur1 SINE Alu 1 146 -3 8 1601 854 248 60 170 chr5 133296143 133296658 -19240601 + RMER5 LTR ERV1 65 525 -9 8 1601 648 316 21 42 chr5 133297120 133297133 -19240126 - B4 SINE B4 -9 283 271 8 1601 342 0 0 0 chr5 133297133 133297171 -19240088 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1601 648 316 21 42 chr5 133297171 133297444 -19239815 - B4 SINE B4 -22 270 4 8 1601 536 307 7 24 chr5 133297702 133298515 -19238744 + GA-rich Low_complexity Low_complexity 1 798 0 8 1601 32 26 0 0 chr5 133298802 133298841 -19238418 + AT_rich Low_complexity Low_complexity 1 39 0 8 1601 255 298 71 12 chr5 133298981 133299066 -19238193 + MLT1A LTR MaLR 6 95 -279 8 1601 375 23 0 0 chr5 133299170 133299214 -19238045 + (TCCC)n Simple_repeat Simple_repeat 4 47 0 8 1601 185 224 0 17 chr5 133299216 133299275 -19237984 + CT-rich Low_complexity Low_complexity 3 60 0 8 1601 1684 192 78 19 chr5 133299486 133299858 -19237401 + MTD LTR MaLR 18 411 -8 8 200 570 229 146 109 chr5 133300219 133300494 -19236765 + B4 SINE B4 8 292 0 8 1602 525 263 87 60 chr5 133300516 133300594 -19236665 + B4 SINE B4 1 88 -204 8 1602 2286 119 14 3 chr5 133300594 133300949 -19236310 + RLTR15 LTR ERVK 1 359 0 8 1602 525 263 87 60 chr5 133300949 133301088 -19236171 + B4 SINE B4 89 224 -68 8 1602 644 107 0 10 chr5 133301143 133301247 -19236012 + (GA)n Simple_repeat Simple_repeat 1 103 0 8 1602 1344 118 0 0 chr5 133301423 133301610 -19235649 + B2_Mm2 SINE B2 3 189 -6 8 1602 816 172 87 27 chr5 133301620 133301805 -19235454 + B3A SINE B2 2 197 -1 8 1602 398 153 0 9 chr5 133302444 133302451 -19234808 + (CA)n Simple_repeat Simple_repeat 2 8 0 8 1602 713 209 166 39 chr5 133302451 133302566 -19234693 + B4A SINE B4 1 121 -171 8 1602 618 49 0 0 chr5 133302566 133302648 -19234611 + (TGGGGG)n Simple_repeat Simple_repeat 3 84 0 8 1602 713 209 166 39 chr5 133302648 133302791 -19234468 + B4A SINE B4 122 291 -1 8 1602 398 153 0 9 chr5 133302791 133302895 -19234364 + (CA)n Simple_repeat Simple_repeat 1 104 0 8 1602 323 82 20 0 chr5 133302896 133302945 -19234314 + HAL1-3A_ME LINE L1 1978 2027 -831 8 1602 501 306 110 14 chr5 133303079 133303200 -19234059 + B4A SINE B4 2 128 -164 8 1602 315 0 0 0 chr5 133303200 133303235 -19234024 + (TG)n Simple_repeat Simple_repeat 1 35 0 8 1602 501 306 110 14 chr5 133303235 133303322 -19233937 + B4A SINE B4 129 230 -62 8 1602 730 261 12 0 chr5 133304148 133304309 -19232950 + Lx8 LINE L1 7108 7270 -203 8 1602 732 221 112 26 chr5 133304317 133304650 -19232609 - MT2A LTR ERVL -7 594 92 8 1602 225 265 0 0 chr5 133304650 133304699 -19232560 - MT2A LTR ERVL -407 126 78 8 1602 276 259 0 133 chr5 133304690 133304788 -19232471 + MT2B LTR ERVL 154 238 -363 8 1602 706 182 7 55 chr5 133304712 133304857 -19232402 + B1_Mur4 SINE Alu 13 150 0 8 1602 512 167 0 0 chr5 133304872 133304956 -19232303 - MT2A LTR ERVL -449 84 1 8 1602 290 267 142 53 chr5 133304960 133305004 -19232255 + Lx8 LINE L1 7264 7303 -170 8 1602 1061 204 245 47 chr5 133305004 133305473 -19231786 - RMER2 LTR ERV1 -4 563 2 8 1602 290 267 142 53 chr5 133305473 133305618 -19231641 + Lx8 LINE L1 7304 7470 -3 8 1602 396 0 0 0 chr5 133305732 133305776 -19231483 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1602 225 94 0 0 chr5 133305786 133305818 -19231441 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1602 339 243 144 36 chr5 133305858 133305969 -19231290 - ID_B1 SINE B4 -101 123 1 8 1602 454 272 0 17 chr5 133306136 133306252 -19231007 - PB1D10 SINE Alu -2 115 2 8 1602 1736 177 11 81 chr5 133306343 133306724 -19230535 + ORR1B1 LTR MaLR 41 394 0 8 1602 22 35 0 0 chr5 133306745 133306774 -19230485 + AT_rich Low_complexity Low_complexity 1 29 0 8 1602 808 237 37 14 chr5 133306844 133307062 -19230197 + ID_B1 SINE B4 2 224 0 8 1602 629 288 10 68 chr5 133307384 133307431 -19229828 - B3A SINE B2 -3 195 159 8 1602 303 104 0 0 chr5 133307431 133307479 -19229780 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1602 629 288 10 68 chr5 133307479 133307636 -19229623 - B3A SINE B2 -40 158 3 8 1602 311 293 105 8 chr5 133307970 133308094 -19229165 + B1F1 SINE Alu 13 148 -1 8 1602 680 226 42 9 chr5 133308104 133308285 -19228974 + ZP3AR Satellite Satellite 1 187 -1 8 1602 1145 53 13 0 chr5 133308310 133308462 -19228797 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 8 1602 591 252 107 0 chr5 133308576 133308709 -19228550 - B3A SINE B2 -22 176 27 8 1602 315 0 0 0 chr5 133308709 133308744 -19228515 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1602 591 252 107 0 chr5 133308744 133308769 -19228490 - B3A SINE B2 -172 26 2 8 1602 396 0 0 0 chr5 133308835 133308879 -19228380 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1602 482 194 0 30 chr5 133310138 133310239 -19227020 - MTEb LTR MaLR -20 359 262 8 1602 225 65 0 0 chr5 133310663 133310694 -19226565 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1602 1512 116 31 0 chr5 133310778 133311184 -19226075 - ZP3AR Satellite Satellite -21 418 1 8 1602 402 292 71 22 chr5 133311186 133311368 -19225891 - L1M6 LINE L1 -6305 191 1 8 1602 24 0 0 0 chr5 133311669 133311693 -19225566 + AT_rich Low_complexity Low_complexity 1 24 0 8 1602 684 252 6 18 chr5 133311696 133311862 -19225397 - RSINE1 SINE B4 0 165 2 8 1602 639 175 16 8 chr5 133312028 133312155 -19225104 + ZP3AR Satellite Satellite 6 133 -79 8 1602 259 333 21 32 chr5 133312727 133312820 -19224439 + B3A SINE B2 71 162 -54 8 1602 345 47 0 0 chr5 133312826 133312869 -19224390 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1602 659 307 141 11 chr5 133312876 133313159 -19224100 + Tigger7 DNA MER2_type 25 344 -2147 8 1602 197 430 0 8 chr5 133313375 133313497 -19223762 - MIRb SINE MIR -32 236 116 9 1602 363 78 0 0 chr5 133313640 133313691 -19223568 + (TATG)n Simple_repeat Simple_repeat 4 54 0 9 1602 524 280 9 38 chr5 133313701 133313927 -19223332 - B4 SINE B4 -32 260 2 9 1602 727 231 0 13 chr5 133313960 133314109 -19223150 + B3A SINE B2 1 147 -51 9 1602 454 114 11 11 chr5 133314113 133314202 -19223057 + (CA)n Simple_repeat Simple_repeat 2 90 0 9 1602 23 0 0 0 chr5 133314206 133314229 -19223030 + AT_rich Low_complexity Low_complexity 1 23 0 9 1602 297 0 0 0 chr5 133314805 133314838 -19222421 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1602 449 344 0 0 chr5 133315827 133315958 -19221301 + RSINE1 SINE B4 15 145 -20 9 1602 252 0 0 0 chr5 133315958 133315986 -19221273 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1602 27 0 0 0 chr5 133315986 133316013 -19221246 + AT_rich Low_complexity Low_complexity 1 27 0 9 1602 3510 18 5 0 chr5 133316252 133316646 -19220613 - MTA_Mm LTR MaLR 0 396 1 9 1602 1127 264 51 51 chr5 133316725 133317076 -19220183 - ORR1E LTR MaLR -8 351 1 9 1602 565 296 12 24 chr5 133317134 133317300 -19219959 - RSINE1 SINE B4 0 165 2 9 1602 502 320 64 0 chr5 133317749 133317921 -19219338 + B3A SINE B2 3 185 -13 9 1602 252 279 49 0 chr5 133318013 133318105 -19219154 - MIRc SINE MIR -126 142 43 9 1602 636 265 31 77 chr5 133318287 133318483 -19218776 - B3A SINE B2 -7 191 5 9 1602 326 287 4 83 chr5 133318511 133318648 -19218611 - B3A SINE B2 -6 210 85 9 1602 649 260 27 0 chr5 133318666 133318812 -19218447 + ZP3AR Satellite Satellite 41 190 -22 9 1602 357 43 0 0 chr5 133319555 133319602 -19217657 + (TC)n Simple_repeat Simple_repeat 2 48 0 9 1602 543 305 0 0 chr5 133319618 133319749 -19217510 - RSINE1 SINE B4 -33 132 2 9 1602 1605 165 148 15 chr5 133319925 133320091 -19217168 - ORR1C2 LTR MaLR 0 384 209 9 1602 192 97 0 0 chr5 133320091 133320122 -19217137 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1602 459 0 0 0 chr5 133320132 133320183 -19217076 + (GA)n Simple_repeat Simple_repeat 1 51 0 9 1602 1605 165 148 15 chr5 133320183 133320344 -19216915 - ORR1C2 LTR MaLR -193 191 4 9 1602 1191 215 27 145 chr5 133320614 133321027 -19216232 - MTE2a LTR MaLR -15 364 1 9 1602 434 320 80 42 chr5 133321101 133321313 -19215946 - MER58A DNA MER1_type 0 224 5 9 1602 195 330 73 48 chr5 133321375 133321499 -19215760 - MIRm SINE MIR -29 247 121 9 1602 676 254 72 5 chr5 133321610 133321804 -19215455 - MLT1G3 LTR MaLR 0 595 389 9 1602 360 295 30 8 chr5 133321813 133321946 -19215313 + L1MB8 LINE L1 5872 6007 -171 9 1602 223 271 0 28 chr5 133321976 133322048 -19215211 + CT-rich Low_complexity Low_complexity 1 70 0 9 1602 448 278 66 83 chr5 133322048 133322276 -19214983 - ID_B1 SINE B4 0 224 1 9 1602 335 258 0 83 chr5 133322276 133322420 -19214839 + L1MB8 LINE L1 6026 6157 -21 9 1602 428 158 60 12 chr5 133322425 133322591 -19214668 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 9 1602 1068 226 135 8 chr5 133322942 133323201 -19214058 + B4 SINE B4 1 292 0 9 1602 1133 68 17 6 chr5 133323202 133323380 -19213879 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1602 335 105 18 0 chr5 133323396 133323453 -19213806 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1602 800 136 25 0 chr5 133323469 133323631 -19213628 + (CA)n Simple_repeat Simple_repeat 1 166 0 9 1602 908 116 23 0 chr5 133323647 133323819 -19213440 + (CA)n Simple_repeat Simple_repeat 1 176 0 9 1602 997 121 11 0 chr5 133323835 133324009 -19213250 + (CA)n Simple_repeat Simple_repeat 1 176 0 9 1602 273 146 0 0 chr5 133324025 133324073 -19213186 + (CA)n Simple_repeat Simple_repeat 1 48 0 9 1602 440 18 0 17 chr5 133324841 133324899 -19212360 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 9 1602 1131 71 0 0 chr5 133324901 133325041 -19212218 - B1_Mus1 SINE Alu -6 142 3 9 1602 372 43 0 0 chr5 133325302 133325348 -19211911 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1602 580 241 44 0 chr5 133326160 133326297 -19210962 + B3A SINE B2 1 143 -55 9 1602 719 293 21 31 chr5 133327105 133327394 -19209865 + B4A SINE B4 3 288 -4 9 1602 1002 237 141 24 chr5 133327413 133327522 -19209737 - ORR1D1 LTR MaLR -89 285 181 9 1602 1095 74 0 18 chr5 133327522 133327688 -19209571 + (GGGAGA)n Simple_repeat Simple_repeat 4 166 0 9 1602 1002 237 141 24 chr5 133327688 133327833 -19209426 - ORR1D1 LTR MaLR -194 180 1 9 1602 1038 292 4 18 chr5 133328199 133328471 -19208788 + B4A SINE B4 13 280 -12 9 1602 651 26 0 0 chr5 133328485 133328562 -19208697 + (CA)n Simple_repeat Simple_repeat 1 77 0 9 1602 1242 227 158 45 chr5 133328621 133328753 -19208506 + ORR1D1 LTR MaLR 1 177 -197 9 1602 612 0 0 0 chr5 133328753 133328821 -19208438 + (TC)n Simple_repeat Simple_repeat 2 69 0 9 1602 1242 227 158 45 chr5 133328821 133329024 -19208235 + ORR1D1 LTR MaLR 178 374 0 9 1602 290 250 95 32 chr5 133329352 133329447 -19207812 - PB1D10 SINE Alu -16 101 1 9 1602 2172 133 15 12 chr5 133329543 133329869 -19207390 + ORR1A2 LTR MaLR 1 327 0 9 1602 659 196 0 0 chr5 133330051 133330163 -19207096 - RSINE1 SINE B4 -29 136 25 9 1602 1207 251 58 39 chr5 133330351 133330712 -19206547 - MTEa LTR MaLR -11 368 1 9 1602 863 264 0 39 chr5 133331240 133331445 -19205814 + B3A SINE B2 1 197 -1 9 1602 820 274 13 24 chr5 133332687 133332956 -19204303 + MTD LTR MaLR 36 287 -120 9 1602 1566 244 94 73 chr5 133333022 133333291 -19203968 + RMER15 LTR ERVL 27 330 -245 9 1602 1170 53 0 0 chr5 133333291 133333441 -19203818 + (TTTC)n Simple_repeat Simple_repeat 4 153 0 9 1602 1566 244 94 73 chr5 133333441 133333480 -19203779 + RMER15 LTR ERVL 331 343 -232 9 1602 399 41 0 0 chr5 133333480 133333529 -19203730 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 9 1602 1566 244 94 73 chr5 133333529 133333741 -19203518 + RMER15 LTR ERVL 344 559 -16 9 1602 1343 249 94 33 chr5 133333808 133334202 -19203057 - MTD LTR MaLR 0 419 2 9 1602 669 292 37 32 chr5 133334284 133334547 -19202712 - ORR1E LTR MaLR -111 259 3 9 1602 222 193 0 0 chr5 133335295 133335352 -19201907 + (TG)n Simple_repeat Simple_repeat 1 57 0 9 1602 386 39 19 0 chr5 133335374 133335426 -19201833 + (GA)n Simple_repeat Simple_repeat 1 53 0 9 1602 382 210 120 0 chr5 133335483 133335583 -19201676 - PB1D10 SINE Alu -1 116 5 9 1602 555 62 0 0 chr5 133335602 133335682 -19201577 + (CAAAAA)n Simple_repeat Simple_repeat 2 81 0 9 1602 352 254 70 28 chr5 133336192 133336334 -19200925 + B1_Mus1 SINE Alu 1 148 0 9 1602 413 364 62 12 chr5 133336880 133337136 -19200123 + RMER15 LTR ERVL 302 570 -5 9 1602 485 273 42 7 chr5 133337791 133337935 -19199324 + RSINE1 SINE B4 3 151 -14 9 1602 3774 70 0 8 chr5 133338140 133338657 -19198602 - L1Md_F2 LINE L1 0 6582 6097 9 1602 252 0 0 0 chr5 133338657 133338685 -19198574 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 9 1602 608 97 0 11 chr5 133338719 133338813 -19198446 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 9 1602 264 88 0 0 chr5 133338813 133338847 -19198412 + (TC)n Simple_repeat Simple_repeat 2 35 0 9 1602 195 42 0 0 chr5 133338881 133338905 -19198354 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 9 1602 360 64 0 0 chr5 133338912 133338959 -19198300 + (TATG)n Simple_repeat Simple_repeat 4 50 0 9 1602 850 148 0 0 chr5 133338959 133339087 -19198172 - B3 SINE B2 -88 128 1 9 1602 680 280 80 35 chr5 133339087 133339302 -19197957 - B4A SINE B4 -60 232 8 9 1602 1176 229 19 26 chr5 133340011 133340280 -19196979 + B4 SINE B4 4 270 -22 9 1602 269 341 35 0 chr5 133340390 133340475 -19196784 + B1F1 SINE Alu 11 98 -51 9 1602 461 291 47 0 chr5 133340539 133340666 -19196593 + RSINE1 SINE B4 3 135 -30 9 1602 24 0 0 0 chr5 133340951 133340975 -19196284 + AT_rich Low_complexity Low_complexity 1 24 0 9 1602 278 305 46 28 chr5 133341273 133341381 -19195878 + MLT1A1 LTR MaLR 21 130 -278 9 1602 1215 221 130 86 chr5 133341466 133341828 -19195431 + MTE2a LTR MaLR 1 378 -1 9 1602 3881 200 60 103 chr5 133341927 133342032 -19195227 - RMER1A Other Other -19 1011 901 9 1602 432 0 0 0 chr5 133342032 133342080 -19195179 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1602 3881 228 55 102 chr5 133342080 133343351 -19193908 - RMER1A Other Other -130 900 14 9 1602 1963 121 22 81 chr5 133343875 133344245 -19193014 - ORR1B1 LTR MaLR 0 394 47 9 1602 633 290 75 81 chr5 133344260 133344594 -19192665 + ORR1E LTR MaLR 28 359 0 9 1602 558 294 43 81 chr5 133344731 133344916 -19192343 + B3A SINE B2 6 183 -12 9 1602 402 247 70 16 chr5 133344910 133345095 -19192164 + MER63D DNA AcHobo 46 240 -821 9 1602 785 206 27 21 chr5 133345174 133345362 -19191897 + B2_Mm2 SINE B2 1 189 -6 9 1602 183 80 0 0 chr5 133345366 133345391 -19191868 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1602 505 313 0 0 chr5 133345402 133345533 -19191726 - RSINE1 SINE B4 -23 142 12 9 1602 242 206 16 0 chr5 133345541 133345604 -19191655 + (TA)n Simple_repeat Simple_repeat 1 64 0 9 1602 308 324 117 0 chr5 133345605 133345716 -19191543 - B1F SINE Alu -13 136 13 9 1602 305 301 0 0 chr5 133346913 133347006 -19190253 + (TG)n Simple_repeat Simple_repeat 1 93 0 9 1602 342 152 0 0 chr5 133347008 133347067 -19190192 + (TA)n Simple_repeat Simple_repeat 2 60 0 9 1602 204 320 0 13 chr5 133347067 133347134 -19190125 + (TG)n Simple_repeat Simple_repeat 2 68 0 9 1602 2448 172 51 25 chr5 133347134 133347648 -19189611 + RLTR11A2 LTR ERVK 1 527 0 9 1602 204 320 0 13 chr5 133347648 133347656 -19189603 + (TG)n Simple_repeat Simple_repeat 2 9 0 9 1602 864 269 91 21 chr5 133348639 133348924 -19188335 - ORR1E LTR MaLR -52 307 3 9 1602 277 232 12 24 chr5 133349305 133349389 -19187870 - ID4_ SINE ID 0 83 1 9 1602 361 350 0 8 chr5 133349571 133349692 -19187567 - B4 SINE B4 -83 209 90 9 1602 372 237 0 0 chr5 133349741 133349817 -19187442 - B4 SINE B4 -216 76 1 9 1602 712 191 109 18 chr5 133350196 133350361 -19186898 + B3A SINE B2 3 182 -16 9 1602 185 178 0 22 chr5 133350377 133350423 -19186836 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1602 563 144 5 60 chr5 133350442 133350627 -19186632 + (CA)n Simple_repeat Simple_repeat 1 175 0 9 1602 249 33 0 0 chr5 133350665 133350695 -19186564 + (TAA)n Simple_repeat Simple_repeat 3 32 0 9 1602 815 255 15 32 chr5 133351134 133351383 -19185876 - ZP3AR Satellite Satellite -20 244 1 9 1602 22 0 0 0 chr5 133351567 133351589 -19185670 + AT_rich Low_complexity Low_complexity 1 22 0 1 1602 216 281 0 15 chr5 133351589 133351654 -19185605 - B4A SINE B4 -228 64 1 9 1602 21 0 0 0 chr5 133351892 133351913 -19185346 + AT_rich Low_complexity Low_complexity 1 21 0 1 1602 249 211 0 0 chr5 133351918 133351975 -19185284 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1 1602 309 100 0 0 chr5 133352010 133352060 -19185199 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1602 623 285 0 7 chr5 133352061 133352213 -19185046 - B3A SINE B2 -46 152 2 1 1602 1196 243 81 20 chr5 133353306 133353651 -19183608 + ORR1D2 LTR MaLR 5 370 0 1 1602 346 183 70 0 chr5 133353651 133353722 -19183537 - ID4 SINE ID -7 76 1 1 1602 1195 84 0 0 chr5 133353722 133353900 -19183359 - ZP3AR Satellite Satellite -11 201 24 1 1602 428 0 19 0 chr5 133354049 133354101 -19183158 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1602 702 280 61 19 chr5 133354123 133354393 -19182866 - B4A SINE B4 -2 290 8 1 1602 553 229 100 0 chr5 133354439 133354579 -19182680 - ID_B1 SINE B4 -62 162 9 1 1602 276 30 0 0 chr5 133355307 133355340 -19181919 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1602 396 267 147 7 chr5 133355346 133355482 -19181777 - B3A SINE B2 -41 157 3 1 1602 354 363 9 0 chr5 133355485 133355598 -19181661 - PB1D10 SINE Alu -1 116 3 1 1602 255 274 11 77 chr5 133355517 133355608 -19181651 - MT2B2 LTR ERVL -343 241 157 1 1602 563 278 173 0 chr5 133355761 133355952 -19181307 - ID_B1 SINE B4 0 224 1 1 1602 5340 32 2 2 chr5 133356040 133356660 -19180599 + L1Md_F2 LINE L1 5960 6579 -3 1 1602 435 19 0 0 chr5 133356736 133356788 -19180471 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1602 274 237 104 31 chr5 133356860 133356956 -19180303 - B4A SINE B4 -81 211 109 1 1602 486 0 0 0 chr5 133356970 133357024 -19180235 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1 1602 381 43 0 0 chr5 133357429 133357476 -19179783 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1602 530 287 42 18 chr5 133357520 133357687 -19179572 - B4 SINE B4 0 292 122 1 1602 454 225 29 0 chr5 133358462 133358635 -19178624 + CT-rich Low_complexity Low_complexity 2 179 0 1 1602 211 227 40 0 chr5 133358663 133358738 -19178521 + CT-rich Low_complexity Low_complexity 2 79 0 1 1602 249 188 40 46 chr5 133358802 133358975 -19178284 + CT-rich Low_complexity Low_complexity 1 172 0 1 1602 341 214 119 0 chr5 133359039 133359123 -19178136 - B1F SINE Alu -49 100 7 1 1602 316 308 0 27 chr5 133359148 133359258 -19178001 - B4A SINE B4 0 292 186 1 1602 228 238 48 0 chr5 133359402 133359465 -19177794 + L2c LINE L2 3322 3387 0 1 1602 249 108 0 0 chr5 133359507 133359544 -19177715 + (TCC)n Simple_repeat Simple_repeat 3 39 0 1 1602 822 202 0 0 chr5 133359536 133359709 -19177550 + CT-rich Low_complexity Low_complexity 3 175 0 1 1602 645 130 0 0 chr5 133359709 133359801 -19177458 + (TCC)n Simple_repeat Simple_repeat 3 94 0 1 1602 317 330 163 13 chr5 133360475 133360702 -19176557 - B4A SINE B4 0 292 32 1 1602 314 274 24 0 chr5 133360876 133360960 -19176299 + L1MA6 LINE L1 5643 5728 -572 1 1602 471 327 7 0 chr5 133360988 133361138 -19176121 + ID_B1 SINE B4 70 220 -4 1 1602 349 333 21 14 chr5 133361145 133361288 -19175971 + RSINE1 SINE B4 3 146 -19 1 1602 507 296 48 52 chr5 133361360 133361649 -19175610 + L1MA6 LINE L1 5767 6054 -246 1 1602 256 259 10 128 chr5 133361895 133361997 -19175262 + ZP3AR Satellite Satellite 45 134 -78 1 1602 360 0 0 0 chr5 133362059 133362099 -19175160 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1602 351 0 0 0 chr5 133362099 133362137 -19175122 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1602 705 272 10 49 chr5 133362162 133362367 -19174892 - B3A SINE B2 -1 197 1 1 1602 756 303 64 9 chr5 133362402 133362635 -19174624 + B4A SINE B4 47 292 0 1 1602 421 279 8 16 chr5 133362702 133362826 -19174433 - MER82 DNA MER2_type 0 653 531 1 1602 213 281 87 29 chr5 133362906 133363044 -19174215 + MIRb SINE MIR 31 179 -89 1 1602 234 91 0 0 chr5 133363093 133363126 -19174133 - MER82 DNA MER2_type -562 91 59 1 1602 323 253 10 44 chr5 133363424 133363550 -19173709 - MTEa LTR MaLR -7 372 253 1 1602 267 203 0 0 chr5 133363861 133363925 -19173334 + (TTCA)n Simple_repeat Simple_repeat 1 64 0 1 1602 438 69 0 0 chr5 133363941 133363999 -19173260 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1602 354 194 48 48 chr5 133364049 133364152 -19173107 + MTEb LTR MaLR 277 379 0 1 1602 322 224 0 0 chr5 133364249 133364307 -19172952 - ID_B1 SINE B4 -65 159 102 1 1602 603 0 0 0 chr5 133364337 133364404 -19172855 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 1602 495 33 0 0 chr5 133364404 133364464 -19172795 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1602 405 269 0 0 chr5 133364483 133364576 -19172683 - B3A SINE B2 -105 93 1 1 1602 339 25 0 0 chr5 133364591 133364631 -19172628 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1602 694 281 0 0 chr5 133364633 133364800 -19172459 - B3A SINE B2 -23 175 9 1 1602 298 288 129 0 chr5 133365223 133365355 -19171904 + L1MEc LINE L1 1884 2032 -4368 1 1602 554 227 6 0 chr5 133365375 133365538 -19171721 + (TG)n Simple_repeat Simple_repeat 2 165 0 1 1602 583 287 55 52 chr5 133365541 133365831 -19171428 - B4A SINE B4 0 292 2 1 1602 1660 255 60 20 chr5 133365901 133366397 -19170862 + RMER20A LTR ERVK 1 516 0 1 1602 240 143 0 0 chr5 133366615 133366657 -19170602 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1602 951 255 55 4 chr5 133366683 133366955 -19170304 - B4 SINE B4 -2 290 5 1 1602 945 257 125 6 chr5 133367400 133367737 -19169522 - MTEa LTR MaLR 0 379 3 1 1602 185 312 0 0 chr5 133368103 133368151 -19169108 - MER5A DNA MER1_type 0 189 142 1 1602 474 18 0 0 chr5 133368233 133368288 -19168971 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1602 486 258 52 29 chr5 133368316 133368488 -19168771 - B4A SINE B4 -109 183 8 1 1602 246 62 0 0 chr5 133369009 133369041 -19168218 + (GGA)n Simple_repeat Simple_repeat 2 33 0 1 1602 484 243 27 9 chr5 133369105 133369217 -19168042 + B1F SINE Alu 8 121 -28 1 1602 1389 127 244 13 chr5 133369401 133369713 -19167546 + ORR1B1 LTR MaLR 1 384 -10 1 1602 471 78 0 0 chr5 133369997 133370061 -19167198 + (TCCC)n Simple_repeat Simple_repeat 1 64 0 1 1602 429 207 41 41 chr5 133370097 133370218 -19167041 - B1F SINE Alu -2 147 27 1 1602 280 81 0 0 chr5 133370220 133370257 -19167002 - RLTR23 LTR ERV1 -393 37 1 1 1602 305 227 60 30 chr5 133370271 133370371 -19166888 - PB1D10 SINE Alu -1 116 14 1 1602 23 0 0 0 chr5 133370878 133370901 -19166358 + AT_rich Low_complexity Low_complexity 1 23 0 1 1602 675 65 0 0 chr5 133371088 133371181 -19166078 + (TC)n Simple_repeat Simple_repeat 2 94 0 1 1602 1453 192 42 13 chr5 133372103 133372409 -19164850 - MTD LTR MaLR -104 315 1 1 1602 1543 56 4 3 chr5 133373142 133373731 -19163528 + ZP3AR Satellite Satellite 1 589 0 1 1602 315 281 9 30 chr5 133374210 133374449 -19162810 + GA-rich Low_complexity Low_complexity 1 233 0 1 1602 261 0 0 0 chr5 133375166 133375195 -19162064 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1602 1075 175 76 6 chr5 133375957 133376266 -19160993 - ZP3AR Satellite Satellite -89 330 1 1 1602 504 48 0 0 chr5 133376716 133376779 -19160480 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 1 1602 259 309 71 50 chr5 133376793 133376892 -19160367 - PB1D7 SINE Alu -17 103 3 1 1602 2000 92 140 6 chr5 133376902 133377251 -19160008 + MTA_Mm LTR MaLR 1 396 0 1 1602 2720 15 0 17 chr5 133377251 133377554 -19159705 - ORR1A0 LTR MaLR -49 297 1 1 1602 445 66 0 0 chr5 133377554 133377615 -19159644 + MTB LTR MaLR 347 407 0 1 1602 8245 63 14 20 chr5 133377615 133378720 -19158539 + MTB-int LTR MaLR 1 1098 0 1 1602 2814 64 72 5 chr5 133378720 133379095 -19158164 + MTB LTR MaLR 1 400 0 1 1602 380 250 38 19 chr5 133379358 133379464 -19157795 + PB1D10 SINE Alu 10 117 0 1 1602 719 162 7 0 chr5 133379474 133379610 -19157649 + ZP3AR Satellite Satellite 51 187 -25 1 1602 280 277 0 0 chr5 133379571 133379636 -19157623 + BC1_Mm scRNA scRNA 1 65 -87 1 1602 230 343 0 0 chr5 133379578 133379648 -19157611 + tRNA-Ala-GCY_ tRNA tRNA 2 71 -4 1 1602 467 229 57 40 chr5 133379708 133379885 -19157374 - MER105 DNA DNA -18 186 7 1 1602 496 272 17 9 chr5 133379967 133380082 -19157177 - ID_B1 SINE B4 -29 195 80 1 1602 240 250 13 40 chr5 133380211 133380286 -19156973 + MIR3 SINE MIR 126 198 -10 1 1602 319 288 0 0 chr5 133380708 133380781 -19156478 - ID2 SINE ID -10 73 1 1 1602 978 120 0 0 chr5 133380781 133380939 -19156320 - ZP3AR Satellite Satellite -11 201 44 1 1602 189 0 0 0 chr5 133380943 133380964 -19156295 + (TC)n Simple_repeat Simple_repeat 2 22 0 1 1602 396 0 0 0 chr5 133380964 133381007 -19156252 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1602 426 69 0 0 chr5 133381007 133381065 -19156194 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1602 288 346 0 9 chr5 133381115 133381223 -19156036 - PB1D10 SINE Alu -8 109 3 1 1602 181 352 0 43 chr5 133381228 133381320 -19155939 + MIR SINE MIR 11 98 -164 1 1602 655 317 103 0 chr5 133381382 133381682 -19155577 + MER2 DNA MER2_type 11 341 -4 1 1602 441 0 0 0 chr5 133382073 133382122 -19155137 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1602 333 0 0 0 chr5 133382122 133382158 -19155101 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1602 26 0 0 0 chr5 133382844 133382870 -19154389 + AT_rich Low_complexity Low_complexity 1 26 0 1 1602 488 185 213 7 chr5 133382895 133383031 -19154228 - B3A SINE B2 -34 164 1 1 1602 30 27 0 0 chr5 133383037 133383074 -19154185 + AT_rich Low_complexity Low_complexity 1 37 0 1 1602 344 250 113 20 chr5 133383199 133383350 -19153909 - Lx8 LINE L1 -2 7471 7307 1 1602 737 194 74 53 chr5 133383349 133383539 -19153720 - Lx8 LINE L1 -320 7153 6960 1 1602 327 49 0 0 chr5 133384489 133384530 -19152729 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1602 336 286 104 17 chr5 133384583 133384785 -19152474 - B4A SINE B4 -59 233 2 1 1602 930 156 0 0 chr5 133385388 133385561 -19151698 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 1 1602 273 232 0 0 chr5 133385573 133385642 -19151617 + (TCCA)n Simple_repeat Simple_repeat 3 71 0 1 1602 806 290 66 77 chr5 133385647 133386030 -19151229 + MTE2a LTR MaLR 6 401 -18 1 1602 1153 273 18 0 chr5 133386315 133386601 -19150658 - MTE2b LTR MaLR -88 291 1 1 1602 623 267 19 73 chr5 133387165 133387371 -19149888 - B3 SINE B2 -2 214 20 1 1602 819 234 0 57 chr5 133387391 133387600 -19149659 - B3A SINE B2 0 198 2 1 1602 1113 212 74 18 chr5 133388652 133388935 -19148324 + MTE2b LTR MaLR 80 378 -1 1 1602 903 160 0 0 chr5 133389183 133389358 -19147901 + (TGG)n Simple_repeat Simple_repeat 1 175 0 1 1602 1002 234 113 90 chr5 133389462 133389825 -19147434 - MTE2b LTR MaLR -15 364 1 1 1602 902 213 147 59 chr5 133389920 133390099 -19147160 - RMER20B LTR ERVK -102 525 307 1 1602 2693 37 0 9 chr5 133390099 133390429 -19146830 - L1Md_T LINE L1 0 6582 6256 1 1602 902 213 147 59 chr5 133390429 133390569 -19146690 - RMER20B LTR ERVK -321 306 178 1 1602 573 232 80 45 chr5 133390629 133390805 -19146454 - B3A SINE B2 -16 182 1 1 1602 723 245 199 29 chr5 133391326 133391633 -19145626 - ORR1D2 LTR MaLR -4 366 8 1 1602 290 265 12 35 chr5 133391690 133391776 -19145483 - MTEb LTR MaLR -1 378 295 1 1602 426 69 0 0 chr5 133391925 133391983 -19145276 + (GGGA)n Simple_repeat Simple_repeat 3 60 0 1 1602 1102 68 11 28 chr5 133391983 133392164 -19145095 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 1 1602 379 234 0 83 chr5 133392295 133392416 -19144843 - MLT1A1 LTR MaLR -278 130 20 1 1602 397 308 108 0 chr5 133392520 133392650 -19144609 - MTEb LTR MaLR -22 357 214 1 1602 21 0 0 0 chr5 133392650 133392671 -19144588 + AT_rich Low_complexity Low_complexity 1 21 0 1 1602 666 249 47 114 chr5 133392672 133393180 -19144079 - RLTR11B LTR ERVK -22 431 1 1 1602 636 195 104 25 chr5 133393193 133393356 -19143903 - MTEb LTR MaLR -201 178 3 1 1602 562 219 79 21 chr5 133393357 133393497 -19143762 + B1_Mur1 SINE Alu 2 149 0 1 1602 288 266 0 0 chr5 133393564 133393628 -19143631 + BC1_Mm scRNA scRNA 21 84 -68 1 1602 1568 162 45 84 chr5 133393659 133394016 -19143243 - ORR1B1 LTR MaLR 0 394 52 1 1602 267 250 73 0 chr5 133394418 133394486 -19142773 - RSINE1 SINE B4 -59 106 34 1 1602 218 258 0 31 chr5 133394789 133394853 -19142406 + (TATG)n Simple_repeat Simple_repeat 4 65 0 1 1602 895 244 5 35 chr5 133394893 133395093 -19142166 - B4 SINE B4 -97 195 2 1 1602 747 219 58 34 chr5 133395508 133395716 -19141543 + B3 SINE B2 4 216 0 1 1602 360 248 0 0 chr5 133396047 133396148 -19141111 + (TG)n Simple_repeat Simple_repeat 2 102 0 1 1602 433 309 333 43 chr5 133396188 133396413 -19140846 - B4 SINE B4 -2 290 1 1 1602 523 313 87 83 chr5 133396726 133397015 -19140244 + B4A SINE B4 1 290 -2 1 1602 366 237 0 26 chr5 133397058 133397136 -19140123 - PB1D10 SINE Alu -39 78 3 1 1602 540 282 31 25 chr5 133397219 133397379 -19139880 - RSINE1 SINE B4 0 165 5 1 1602 343 328 69 77 chr5 133397384 133397539 -19139720 + L1MD LINE L1 4899 5035 -1111 1 1602 1138 91 215 0 chr5 133397539 133397725 -19139534 - URR1A DNA MER1_type 0 226 1 1 1602 343 328 69 77 chr5 133397725 133397932 -19139327 + L1MD LINE L1 5036 5258 -888 1 1602 306 0 0 0 chr5 133398226 133398260 -19138999 + (ATTG)n Simple_repeat Simple_repeat 2 35 0 1 1602 638 205 46 13 chr5 133398571 133398724 -19138535 - B3A SINE B2 -38 160 3 1 1602 408 223 19 0 chr5 133399323 133399426 -19137833 - LTR33 LTR ERVL 0 515 411 1 1602 517 311 39 11 chr5 133399789 133399968 -19137291 + ID_B1 SINE B4 20 203 -21 1 1602 1923 132 3 6 chr5 133400049 133400361 -19136898 + ORR1B2 LTR MaLR 55 365 -2 1 1602 458 302 0 65 chr5 133402498 133402682 -19134577 - B3A SINE B2 -17 181 10 1 1602 315 122 0 0 chr5 133403460 133403509 -19133750 + (GGGA)n Simple_repeat Simple_repeat 2 50 0 1 1602 209 108 0 26 chr5 133403622 133403660 -19133599 + (TA)n Simple_repeat Simple_repeat 2 38 0 1 1602 313 208 12 100 chr5 133404120 133404200 -19133059 + ID4 SINE ID 2 74 -9 1 1602 257 222 143 0 chr5 133404252 133404315 -19132944 + ID4_ SINE ID 1 72 -11 1 1602 243 0 0 0 chr5 133404335 133404362 -19132897 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1602 729 34 0 0 chr5 133404362 133404449 -19132810 + (GA)n Simple_repeat Simple_repeat 2 89 0 1 1602 583 275 51 17 chr5 133405077 133405336 -19131923 - MTEa LTR MaLR -3 376 79 1 1602 765 19 87 0 chr5 133405331 133405435 -19131824 + MTA_Mm LTR MaLR 284 396 0 1 1602 209 33 0 32 chr5 133405470 133405501 -19131758 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 1 1602 230 246 0 68 chr5 133405605 133405679 -19131580 - B3 SINE B2 -1 215 147 1 1602 988 169 5 32 chr5 133405919 133406109 -19131150 - B3 SINE B2 -30 186 2 1 1602 576 294 37 45 chr5 133407491 133407733 -19129526 - RMER15 LTR ERVL 0 575 336 1 1602 336 48 0 0 chr5 133407739 133407781 -19129478 + (GGGA)n Simple_repeat Simple_repeat 2 43 0 1 1602 311 225 0 27 chr5 133408061 133408134 -19129125 + PB1D7 SINE Alu 49 119 -1 1 1602 427 271 9 0 chr5 133408295 133408402 -19128857 - ORR1E LTR MaLR -251 108 1 1 1602 2928 31 16 3 chr5 133408518 133408904 -19128355 + MTA_Mm LTR MaLR 1 391 -5 1 1602 603 102 0 0 chr5 133408904 133408992 -19128267 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 1 1602 480 35 0 0 chr5 133409157 133409215 -19128044 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1602 239 247 103 0 chr5 133409580 133409677 -19127582 + L3b LINE CR1 189 295 -187 1 1602 400 248 17 34 chr5 133409831 133409948 -19127311 - MTEa LTR MaLR -16 363 249 1 1602 515 209 57 0 chr5 133410246 133410351 -19126908 - ID_B1 SINE B4 -15 209 99 1 1602 636 306 5 11 chr5 133410578 133410763 -19126496 - B4A SINE B4 -108 184 1 1 1602 685 269 16 120 chr5 133411349 133411657 -19125602 + B4 SINE B4 3 278 -14 1 1602 333 0 0 0 chr5 133411686 133411723 -19125536 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1602 180 176 0 0 chr5 133411797 133411831 -19125428 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1602 269 221 0 105 chr5 133411891 133411977 -19125282 - MTD LTR MaLR -8 371 295 1 1602 531 223 114 8 chr5 133412130 133412261 -19124998 + RSINE1 SINE B4 1 145 -20 1 1602 429 20 0 0 chr5 133412271 133412321 -19124938 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1602 356 368 37 27 chr5 133412378 133412565 -19124694 - MTD LTR MaLR -226 193 5 1 1602 355 324 72 0 chr5 133412571 133412710 -19124549 - MER5A DNA MER1_type -25 164 16 1 1602 650 286 66 14 chr5 133412929 133413142 -19124117 - Tigger12A DNA MER2_type -21 770 547 1 1602 318 320 141 46 chr5 133413381 133413643 -19123616 + B4A SINE B4 5 291 -1 1 1602 219 189 0 0 chr5 133413653 133413706 -19123553 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1602 342 61 20 0 chr5 133413711 133413760 -19123499 + HAL1-3A_ME LINE L1 1976 2025 -833 1 1602 333 0 0 0 chr5 133414113 133414150 -19123109 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1602 221 245 0 0 chr5 133414150 133414199 -19123060 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1602 781 270 53 10 chr5 133414212 133414418 -19122841 - B4 SINE B4 -8 284 70 1 1602 828 253 143 11 chr5 133414595 133414875 -19122384 + RMER15 LTR ERVL 259 575 0 1 1602 258 292 79 0 chr5 133415123 133415212 -19122047 + B1F1 SINE Alu 12 107 -42 1 1602 678 191 39 82 chr5 133415706 133415912 -19121347 - B3A SINE B2 -1 197 1 1 1602 512 289 63 84 chr5 133416075 133416427 -19120832 + ORR1E LTR MaLR 7 368 -11 1 1602 973 192 39 5 chr5 133416915 133417119 -19120140 - MTEb LTR MaLR 0 379 169 1 1602 468 298 256 53 chr5 133417183 133417617 -19119642 - Lx8 LINE L1 -34 7439 6917 1 1602 855 282 42 35 chr5 133417812 133418095 -19119164 + B4A SINE B4 1 285 -7 1 1602 180 111 0 0 chr5 133418180 133418207 -19119052 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 1 1602 501 17 0 0 chr5 133418274 133418332 -19118927 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1602 700 257 59 23 chr5 133418362 133418581 -19118678 - Lx8 LINE L1 -314 7159 6933 1 1602 1039 190 38 24 chr5 133419208 133419418 -19117841 - ID_B1 SINE B4 -7 217 5 1 1602 252 0 0 0 chr5 133419870 133419898 -19117361 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1602 700 286 5 70 chr5 133419918 133420117 -19117142 - B4A SINE B4 0 292 107 1 1602 28 29 0 0 chr5 133420362 133420397 -19116862 + AT_rich Low_complexity Low_complexity 1 35 0 1 1602 322 280 0 21 chr5 133420883 133420978 -19116281 + CT-rich Low_complexity Low_complexity 2 94 0 1 1602 414 345 36 0 chr5 133421031 133421196 -19116063 + MLT2B3 LTR ERVL 372 542 -12 1 1602 488 242 83 26 chr5 133421207 133421443 -19115816 - MTEb LTR MaLR 0 379 123 1 1602 1124 245 119 30 chr5 133421764 133422126 -19115133 + MTD LTR MaLR 20 413 -6 1 1602 669 262 12 50 chr5 133422558 133422808 -19114451 - MTEa LTR MaLR 0 379 114 1 1602 857 171 6 24 chr5 133422826 133422994 -19114265 + URR1A DNA MER1_type 1 165 -61 1 1602 394 237 10 0 chr5 133423009 133423106 -19114153 - MTEa LTR MaLR -261 98 1 1 1602 615 253 68 64 chr5 133423157 133423423 -19113836 + LTR37B LTR ERV1 198 464 -4 1 1602 1036 239 25 8 chr5 133423503 133423739 -19113520 + B4 SINE B4 1 240 -52 1 1602 246 300 29 0 chr5 133423934 133424004 -19113255 - ID4 SINE ID -11 72 1 1 1602 1018 116 0 0 chr5 133424004 133424151 -19113108 - ZP3AR Satellite Satellite -64 148 2 1 1602 398 281 71 7 chr5 133424192 133424332 -19112927 - B1F1 SINE Alu 0 149 1 1 1602 542 294 14 0 chr5 133424348 133424491 -19112768 - B1F SINE Alu 0 149 5 1 1602 535 277 63 63 chr5 133424576 133424734 -19112525 - RSINE1 SINE B4 0 165 8 1 1602 386 324 74 22 chr5 133424746 133425150 -19112109 + L1M4 LINE L1 4900 5324 -822 1 1602 462 311 72 51 chr5 133425162 133425387 -19111872 + B4 SINE B4 2 231 -61 1 1602 730 199 31 7 chr5 133425387 133425561 -19111698 + B3 SINE B2 1 186 -9 1 1602 303 306 0 0 chr5 133425637 133425722 -19111537 + (CA)n Simple_repeat Simple_repeat 2 86 0 1 1602 752 318 72 58 chr5 133425800 133425936 -19111323 + MT2A LTR ERVL 10 142 -391 1 1602 614 161 398 0 chr5 133425936 133426097 -19111162 - URR1B DNA MER1_type 0 225 1 1 1602 752 318 72 58 chr5 133426097 133426407 -19110852 + MT2A LTR ERVL 143 462 -71 1 1602 324 0 0 0 chr5 133426407 133426443 -19110816 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1602 712 249 65 0 chr5 133426512 133426715 -19110544 + ZP3AR Satellite Satellite 1 216 -1 1 1602 1083 108 0 0 chr5 133427444 133427843 -19109416 + (CA)n Simple_repeat Simple_repeat 1 399 0 1 1602 437 284 0 0 chr5 133427963 133428069 -19109190 + MTEa LTR MaLR 10 115 -264 1 1602 280 275 146 76 chr5 133428069 133428254 -19109005 + RLTR25A LTR ERVK 1 198 -905 1 1602 1177 201 43 4 chr5 133429342 133429597 -19107662 + MTEa LTR MaLR 113 377 -2 1 1602 691 331 18 25 chr5 133429699 133429981 -19107278 - B4A SINE B4 -12 280 1 1 1602 193 355 0 13 chr5 133430243 133430320 -19106939 - MIR3 SINE MIR -46 162 87 1 1602 488 256 0 72 chr5 133430777 133430916 -19106343 + B4 SINE B4 2 130 -162 1 1602 371 322 82 38 chr5 133431028 133431212 -19106047 - MER58A DNA MER1_type -12 212 21 1 1603 754 264 35 15 chr5 133431301 133431501 -19105758 + B4 SINE B4 55 258 -34 1 1603 555 108 0 0 chr5 133431502 133431604 -19105655 + (CA)n Simple_repeat Simple_repeat 2 103 0 1 1603 203 313 42 34 chr5 133431684 133431803 -19105456 + MIRb SINE MIR 73 192 -76 1 1603 499 250 74 60 chr5 133432997 133433196 -19104063 - MTEb LTR MaLR 0 379 205 1 1603 337 212 15 15 chr5 133433454 133433521 -19103738 - 5S rRNA rRNA -31 90 24 1 1603 256 308 13 0 chr5 133433522 133433600 -19103659 - MER21B LTR ERV1 -144 719 641 1 1603 922 325 51 18 chr5 133433742 133434131 -19103128 - MER21B LTR ERV1 -301 562 161 1 1603 601 237 12 160 chr5 133434397 133434653 -19102606 + MTE2a LTR MaLR 1 218 -161 1 1603 591 262 131 0 chr5 133434651 133434834 -19102425 + B3 SINE B2 10 216 0 1 1603 465 292 91 0 chr5 133434834 133434988 -19102271 + MTE2a LTR MaLR 198 365 -14 1 1603 1081 242 10 44 chr5 133435208 133435502 -19101757 + B4 SINE B4 7 290 -2 1 1603 632 249 61 0 chr5 133435549 133435714 -19101545 + B3A SINE B2 2 176 -22 1 1603 532 250 181 25 chr5 133436534 133436772 -19100487 - RMER15 LTR ERVL 0 575 301 1 1603 230 248 75 120 chr5 133436831 133436964 -19100295 - RMER15 LTR ERVL -445 130 4 1 1603 568 359 45 61 chr5 133437019 133437378 -19099881 + ORR1E LTR MaLR 7 359 0 1 1603 549 279 96 10 chr5 133438003 133438202 -19099057 + ID_B1 SINE B4 1 216 -8 1 1603 229 221 60 83 chr5 133438259 133438343 -19098916 - MTEa LTR MaLR -13 366 285 1 1603 1398 201 17 32 chr5 133438508 133438786 -19098473 + RLTR20B2 LTR ERVK 180 455 -105 1 1603 1025 37 90 0 chr5 133438786 133438920 -19098339 + B1_Mm SINE Alu 1 146 -1 1 1603 435 130 0 0 chr5 133438930 133439007 -19098252 + (TG)n Simple_repeat Simple_repeat 2 78 0 1 1603 1398 201 17 32 chr5 133439007 133439062 -19098197 + RLTR20B2 LTR ERVK 465 519 -41 1 1603 746 237 60 102 chr5 133439068 133439303 -19097956 - B4 SINE B4 -62 230 6 1 1603 265 247 40 27 chr5 133439499 133439574 -19097685 - B4 SINE B4 -215 77 2 1 1603 182 267 0 0 chr5 133439691 133439736 -19097523 - L2a LINE L2 -4 3422 3378 1 1603 860 259 81 7 chr5 133440357 133440400 -19096859 - B4A SINE B4 0 292 233 1 1603 890 312 26 11 chr5 133440400 133440669 -19096590 - B4A SINE B4 -19 273 1 1 1603 860 259 81 7 chr5 133440669 133440897 -19096362 - B4A SINE B4 -60 232 3 1 1603 1180 248 184 38 chr5 133441565 133442008 -19095251 - Lx8 LINE L1 -7 7466 6959 1 1603 429 54 0 0 chr5 133442036 133442092 -19095167 + (TG)n Simple_repeat Simple_repeat 1 56 0 1 1603 601 256 83 53 chr5 133442126 133442312 -19094947 - B4 SINE B4 -18 274 82 1 1603 234 0 0 0 chr5 133442312 133442338 -19094921 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1603 601 256 83 53 chr5 133442338 133442415 -19094844 - B4 SINE B4 -211 81 4 1 1603 504 171 26 26 chr5 133442817 133442973 -19094286 + GA-rich Low_complexity Low_complexity 2 157 0 1 1603 234 347 14 0 chr5 133443178 133443250 -19094009 - RSINE1 SINE B4 0 165 93 1 1603 403 300 145 16 chr5 133443241 133443434 -19093825 - B4 SINE B4 -68 224 7 1 1603 330 373 67 36 chr5 133443438 133443663 -19093596 - B4 SINE B4 -59 233 2 1 1603 713 233 6 26 chr5 133444189 133444373 -19092886 + B3A SINE B2 37 216 0 1 1603 1317 107 37 32 chr5 133444563 133444832 -19092427 - ZP3AR Satellite Satellite -3 270 1 1 1603 276 273 29 48 chr5 133444835 133444939 -19092320 - B1F SINE Alu -3 146 45 1 1603 733 288 35 28 chr5 133445687 133445969 -19091290 + B4A SINE B4 9 292 0 1 1603 383 254 24 0 chr5 133445971 133446136 -19091123 + (CA)n Simple_repeat Simple_repeat 1 169 0 1 1603 270 304 48 0 chr5 133446148 133446273 -19090986 + (CA)n Simple_repeat Simple_repeat 2 132 0 1 1603 312 281 67 20 chr5 133446653 133446802 -19090457 + RMER15 LTR ERVL 403 558 -17 1 1603 404 37 19 0 chr5 133447403 133447457 -19089802 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1603 473 242 100 0 chr5 133447470 133447590 -19089669 - RSINE1 SINE B4 -22 143 12 1 1603 306 229 281 30 chr5 133447607 133447742 -19089517 - B4 SINE B4 -69 223 55 1 1603 326 219 186 10 chr5 133447935 133448032 -19089227 + MTD LTR MaLR 20 133 -226 1 1603 461 241 47 198 chr5 133448103 133448285 -19088974 + B3A SINE B2 7 164 -34 1 1603 321 26 0 0 chr5 133448285 133448323 -19088936 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1603 317 241 47 198 chr5 133448323 133448352 -19088907 + B2_Mm2 SINE B2 160 186 -9 1 1603 348 262 101 78 chr5 133448675 133448894 -19088365 + B4A SINE B4 27 250 -42 1 1603 1938 182 29 22 chr5 133448900 133449310 -19087949 + MTD LTR MaLR 7 419 0 1 1603 433 168 86 12 chr5 133449316 133449422 -19087837 + MTD LTR MaLR 267 405 -14 1 1603 382 203 14 0 chr5 133449463 133449606 -19087653 + (CA)n Simple_repeat Simple_repeat 1 145 0 1 1603 331 80 0 20 chr5 133449606 133449657 -19087602 + HAL1-3A_ME LINE L1 1976 2025 -833 1 1603 579 176 59 0 chr5 133450052 133450171 -19087088 - B3A SINE B2 -72 126 1 1 1603 303 85 0 0 chr5 133450368 133450415 -19086844 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1603 726 237 126 37 chr5 133450417 133450632 -19086627 - B4 SINE B4 -19 273 40 1 1603 195 188 0 0 chr5 133450635 133450683 -19086576 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1603 548 40 13 0 chr5 133450745 133450820 -19086439 + (TC)n Simple_repeat Simple_repeat 2 77 0 1 1603 603 175 40 53 chr5 133451529 133451680 -19085579 + ORR1E LTR MaLR 2 150 -209 1 1603 729 181 0 0 chr5 133452600 133452789 -19084470 + CT-rich Low_complexity Low_complexity 1 189 0 1 1603 261 0 0 0 chr5 133452801 133452830 -19084429 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1 1603 1044 118 0 24 chr5 133452830 133452995 -19084264 - B2_Mm2 SINE B2 -34 161 1 1 1603 289 248 94 68 chr5 133453047 133453164 -19084095 + ORR1E LTR MaLR 236 355 -24 1 1603 441 295 222 4 chr5 133453219 133453444 -19083815 + B4A SINE B4 1 274 -18 1 1603 408 71 0 0 chr5 133453469 133453525 -19083734 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1603 234 299 70 65 chr5 133453781 133454010 -19083249 - RMER17C LTR ERVK -44 366 137 1 1603 284 353 64 17 chr5 133454227 133454361 -19082898 - MER82 DNA MER2_type 0 653 512 1 1603 437 50 0 16 chr5 133454361 133454422 -19082837 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1603 284 353 64 17 chr5 133454422 133454460 -19082799 - MER82 DNA MER2_type -142 511 473 1 1603 569 214 23 0 chr5 133454456 133454587 -19082672 - ID_B1 SINE B4 -90 134 1 1 1603 261 0 0 0 chr5 133454654 133454683 -19082576 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1 1603 204 191 0 0 chr5 133454684 133454714 -19082545 + polypyrimidine Low_complexity Low_complexity 19 48 0 1 1603 1054 74 0 0 chr5 133454714 133454849 -19082410 - B1_Mus1 SINE Alu -13 135 1 1 1603 204 191 0 0 chr5 133454849 133454865 -19082394 + polypyrimidine Low_complexity Low_complexity 3 18 0 1 1603 687 232 20 13 chr5 133454866 133455019 -19082240 - RSINE1 SINE B4 0 165 12 1 1603 222 116 0 0 chr5 133455429 133455472 -19081787 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1603 231 294 90 48 chr5 133455704 133455972 -19081287 + RMER17C LTR ERVK 67 345 -65 1 1603 249 33 0 0 chr5 133455972 133456002 -19081257 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1603 1208 235 121 18 chr5 133456078 133456389 -19080870 - MTEa LTR MaLR 0 379 34 1 1603 1046 255 117 9 chr5 133456389 133456678 -19080581 + MTE2b LTR MaLR 1 318 -61 1 1603 411 68 0 0 chr5 133456678 133456737 -19080522 + (CCTG)n Simple_repeat Simple_repeat 2 60 0 1 1603 1046 255 117 9 chr5 133456737 133456780 -19080479 + MTE2b LTR MaLR 319 368 -11 1 1603 339 261 0 142 chr5 133457951 133458085 -19079174 - PB1D10 SINE Alu -2 115 1 1 1603 688 280 11 42 chr5 133458085 133458161 -19079098 - ID SINE ID -151 73 4 1 1603 293 309 106 0 chr5 133458331 133458425 -19078834 + PB1 SINE Alu 21 124 -3 1 1603 370 328 14 62 chr5 133458441 133458587 -19078672 + ZP3AR Satellite Satellite 50 188 -24 1 1603 315 193 0 0 chr5 133458583 133458640 -19078619 + MTC LTR MaLR 5 61 -360 1 1603 1598 207 160 15 chr5 133458642 133459098 -19078161 - RMER19C LTR ERVK -2 609 88 1 1603 1872 134 91 6 chr5 133459126 133459455 -19077804 + MTC LTR MaLR 57 413 -8 1 1603 332 238 124 0 chr5 133459463 133459568 -19077691 + ZP3AR Satellite Satellite 21 138 -74 1 1603 220 286 18 0 chr5 133459538 133459594 -19077665 + ID SINE ID 14 70 -154 1 1603 821 141 0 69 chr5 133459620 133459780 -19077479 + B1_Mur2 SINE Alu 1 149 0 1 1603 247 384 62 22 chr5 133459982 133460206 -19077053 + MLT1L LTR MaLR 176 408 -202 1 1603 1441 94 3 0 chr5 133460529 133461226 -19076033 - ZP3AR Satellite Satellite 0 699 1 1 1603 353 288 63 21 chr5 133461235 133461377 -19075882 - B1F1 SINE Alu -1 148 1 1 1603 248 266 0 12 chr5 133461645 133461725 -19075534 - B4 SINE B4 -213 79 1 1 1603 434 65 0 16 chr5 133461790 133461853 -19075406 + (TTTTC)n Simple_repeat Simple_repeat 4 65 0 1 1603 723 54 0 0 chr5 133462487 133462579 -19074680 + (TC)n Simple_repeat Simple_repeat 2 93 0 1 1603 618 203 211 17 chr5 133462604 133462655 -19074604 - B3 SINE B2 0 216 153 1 1603 477 0 0 0 chr5 133462655 133462708 -19074551 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1603 618 203 211 17 chr5 133462708 133462836 -19074423 - B3 SINE B2 -64 152 2 1 1603 573 304 5 20 chr5 133462910 133463108 -19074151 + B3A SINE B2 1 195 -3 1 1603 340 273 30 10 chr5 133463502 133463602 -19073657 + MTE2a LTR MaLR 15 116 -263 1 1603 1564 223 27 16 chr5 133463874 133464247 -19073012 - MTEb LTR MaLR -2 377 1 1 1603 274 333 16 16 chr5 133464326 133464451 -19072808 - ORR1E LTR MaLR 0 379 255 1 1603 1391 215 17 46 chr5 133464553 133464904 -19072355 - ORR1C2 LTR MaLR -5 379 39 1 1603 413 222 68 83 chr5 133465022 133465214 -19072045 - ORR1E LTR MaLR -168 191 3 1 1603 399 349 6 15 chr5 133465321 133465555 -19071704 + CT-rich Low_complexity Low_complexity 1 231 0 1 1603 575 244 17 0 chr5 133466186 133466301 -19070958 - B1_Mur2 SINE Alu -32 117 1 1 1603 681 259 0 40 chr5 133466317 133466494 -19070765 - B3A SINE B2 -6 192 23 1 1603 1319 221 108 0 chr5 133466731 133467047 -19070212 + MTEa LTR MaLR 4 353 -26 1 1603 201 122 39 39 chr5 133467052 133467103 -19070156 + (TTAA)n Simple_repeat Simple_repeat 3 53 0 1 1603 298 129 32 0 chr5 133467106 133467168 -19070091 + CT-rich Low_complexity Low_complexity 1 64 0 1 1603 735 249 44 62 chr5 133467168 133467395 -19069864 - ID_B1 SINE B4 0 224 2 1 1603 508 300 78 29 chr5 133467450 133467656 -19069603 - MER2 DNA MER2_type -3 342 127 1 1603 268 223 31 31 chr5 133467935 133468032 -19069227 + (TG)n Simple_repeat Simple_repeat 1 97 0 1 1603 220 227 16 25 chr5 133468049 133468171 -19069088 + (TG)n Simple_repeat Simple_repeat 2 122 0 1 1603 272 227 16 38 chr5 133468158 133468341 -19068918 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 1 1603 1094 266 51 0 chr5 133468386 133468660 -19068599 - B4 SINE B4 -1 291 4 1 1603 390 57 0 0 chr5 133469585 133469638 -19067621 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1603 924 278 52 39 chr5 133469666 133469973 -19067286 + ORR1E LTR MaLR 45 355 -4 1 1603 1027 195 75 9 chr5 133470039 133470251 -19067008 + URR1A DNA MER1_type 1 226 0 1 1603 798 237 112 99 chr5 133470607 133470756 -19066503 - MTE2a LTR MaLR 0 379 219 1 1603 771 98 0 0 chr5 133470756 133470888 -19066371 + (GA)n Simple_repeat Simple_repeat 1 132 0 1 1603 798 237 112 99 chr5 133470888 133471112 -19066147 - MTE2a LTR MaLR -161 218 1 1 1603 728 255 32 11 chr5 133471163 133471353 -19065906 + B3 SINE B2 23 216 0 1 1603 789 270 75 46 chr5 133471512 133471792 -19065467 - B4 SINE B4 -3 289 2 1 1603 407 342 32 19 chr5 133472038 133472193 -19065066 - LTR16B LTR ERVL -8 455 299 1 1603 279 239 0 92 chr5 133472453 133472573 -19064686 + ORR1D1 LTR MaLR 6 114 -260 1 1603 402 171 0 14 chr5 133472565 133472636 -19064623 - B4 SINE B4 -222 70 1 1 1603 582 262 62 7 chr5 133472844 133472990 -19064269 + B3A SINE B2 4 157 -41 1 1603 725 28 37 0 chr5 133472993 133473101 -19064158 + (CA)n Simple_repeat Simple_repeat 1 112 0 1 1603 479 294 92 23 chr5 133473784 133473958 -19063301 - B3 SINE B2 -28 188 3 1 1603 195 341 12 0 chr5 133474001 133474086 -19063173 - MIRb SINE MIR -14 254 169 1 1603 1172 94 0 11 chr5 133474906 133475088 -19062171 + (GGA)n Simple_repeat Simple_repeat 1 180 0 1 1603 726 289 11 0 chr5 133475188 133475368 -19061891 + Lx8 LINE L1 6911 7092 -381 1 1603 440 270 20 20 chr5 133475398 133475500 -19061759 + Lx8 LINE L1 7234 7335 -138 1 1603 615 234 17 29 chr5 133475599 133475772 -19061487 + B3 SINE B2 2 166 -27 1 1603 183 42 0 0 chr5 133475778 133475802 -19061457 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1603 270 0 0 0 chr5 133475802 133475832 -19061427 + (TATAA)n Simple_repeat Simple_repeat 1 30 0 1 1603 478 360 65 40 chr5 133476067 133476345 -19060914 - MLT1E2 LTR MaLR -26 601 317 1 1603 251 319 90 94 chr5 133476385 133476586 -19060673 - MLT1E2 LTR MaLR -329 295 96 1 1603 227 317 33 0 chr5 133476658 133476718 -19060541 + MLT1M LTR MaLR 124 185 -487 1 1603 362 178 38 15 chr5 133476837 133476968 -19060291 + (TG)n Simple_repeat Simple_repeat 2 135 0 1 1603 958 247 102 44 chr5 133476974 133477249 -19060010 + B4 SINE B4 2 292 0 1 1603 521 287 66 77 chr5 133477374 133477570 -19059689 - MTEa LTR MaLR -185 194 1 1 1603 309 51 0 0 chr5 133478089 133478128 -19059131 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1603 898 255 39 13 chr5 133478502 133478800 -19058459 - L1MB3 LINE L1 -3 6180 5879 1 1603 480 136 0 47 chr5 133478813 133478898 -19058361 + ETnERV2-int LTR ERVK 1883 1963 -5443 1 1603 40358 28 0 0 chr5 133478918 133484331 -19052928 - L1Md_T LINE L1 0 6582 1170 1 1603 4752 135 41 48 chr5 133484337 133485242 -19052017 - L1Md_T LINE L1 -5411 1205 307 1 1603 242 339 16 0 chr5 133485250 133485371 -19051888 - L1M3 LINE L1 -299 5884 5762 1 1603 202 216 0 0 chr5 133485563 133485600 -19051659 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1603 541 265 0 91 chr5 133485600 133485799 -19051460 - B3A SINE B2 -16 182 2 1 1603 439 325 98 36 chr5 133485959 133486234 -19051025 - B4A SINE B4 0 292 1 1 1603 180 77 0 0 chr5 133486273 133486299 -19050960 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 1 1603 372 279 0 56 chr5 133486343 133486487 -19050772 - B4 SINE B4 -156 136 1 1 1603 231 348 70 35 chr5 133486533 133486676 -19050583 + L4 LINE RTE 1474 1621 -408 1 1603 526 289 7 39 chr5 133487237 133487392 -19049867 - B4A SINE B4 -75 217 68 1 1603 856 281 31 15 chr5 133487554 133487814 -19049445 + B4 SINE B4 4 267 -25 1 1603 474 18 0 0 chr5 133487831 133487886 -19049373 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1603 253 259 0 0 chr5 133488304 133488362 -19048897 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1603 805 121 0 52 chr5 133488386 133488560 -19048699 + T-rich Low_complexity Low_complexity 3 167 0 1 1603 1254 47 0 0 chr5 133488571 133488719 -19048540 - B1_Mus1 SINE Alu 0 148 1 1 1603 24 32 0 0 chr5 133488766 133488797 -19048462 + AT_rich Low_complexity Low_complexity 1 31 0 1 1603 649 191 124 7 chr5 133488807 133488944 -19048315 - RSINE1 SINE B4 -10 155 3 1 1603 268 341 0 0 chr5 133488971 133489053 -19048206 - ID4 SINE ID 0 83 2 1 1603 951 259 22 4 chr5 133489053 133489276 -19047983 - B4 SINE B4 -65 227 1 1 1603 180 200 0 0 chr5 133489547 133489592 -19047667 + (TATG)n Simple_repeat Simple_repeat 1 45 0 1 1603 732 319 16 48 chr5 133489668 133489944 -19047315 - B4A SINE B4 0 292 5 1 1603 269 169 17 0 chr5 133490450 133490509 -19046750 + CT-rich Low_complexity Low_complexity 2 61 0 1 1603 432 103 29 0 chr5 133490614 133490682 -19046577 - B3A SINE B2 -128 70 1 1 1603 1402 204 115 109 chr5 133490892 133490946 -19046313 - MTE2b LTR MaLR 0 379 327 1 1603 519 17 0 0 chr5 133490946 133491006 -19046253 + (GAAA)n Simple_repeat Simple_repeat 2 61 0 1 1603 1402 204 115 109 chr5 133491006 133491326 -19045933 - MTE2b LTR MaLR -53 326 4 1 1603 800 248 0 43 chr5 133491441 133491648 -19045611 + B3 SINE B2 2 199 -17 1 1603 180 0 0 0 chr5 133491653 133491673 -19045586 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1603 464 50 0 48 chr5 133492313 133492397 -19044862 + (TA)n Simple_repeat Simple_repeat 1 80 0 1 1603 1289 157 5 0 chr5 133492766 133492989 -19044270 - RMER4B LTR ERVK -345 240 17 1 1603 396 195 64 92 chr5 133493451 133493592 -19043667 + HAL1-2a_MD LINE L1 2339 2475 -549 1 1603 681 257 11 60 chr5 133493599 133493781 -19043478 + B4 SINE B4 1 173 -119 1 1603 214 171 0 0 chr5 133493781 133493816 -19043443 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1603 21 36 0 0 chr5 133493943 133493971 -19043288 + AT_rich Low_complexity Low_complexity 1 28 0 1 1603 214 327 0 0 chr5 133494405 133494457 -19042802 + ID4_ SINE ID 31 82 -1 1 1603 2483 98 3 0 chr5 133494521 133494847 -19042412 + ORR1A2 LTR MaLR 1 327 0 1 1603 610 266 57 52 chr5 133495098 133495308 -19041951 + B4 SINE B4 27 237 -55 1 1603 287 250 0 0 chr5 133495335 133495415 -19041844 + (CATG)n Simple_repeat Simple_repeat 3 82 0 1 1603 234 105 0 0 chr5 133495841 133495879 -19041380 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1603 400 247 48 48 chr5 133495880 133496046 -19041213 - Lx8 LINE L1 -2 7471 7306 1 1603 234 222 74 30 chr5 133496301 133496376 -19040883 + MIR SINE MIR 159 240 -28 1 1603 480 62 0 0 chr5 133496409 133496473 -19040786 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1603 416 302 84 84 chr5 133496491 133496766 -19040493 - B4A SINE B4 -15 277 3 1 1603 442 299 156 0 chr5 133496798 133496952 -19040307 + B3A SINE B2 5 182 -16 1 1603 462 36 0 0 chr5 133497167 133497223 -19040036 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1603 423 0 0 0 chr5 133497319 133497366 -19039893 + (CAG)n Simple_repeat Simple_repeat 1 47 0 1 1603 2128 164 39 8 chr5 133497992 133498379 -19038880 + MTB_Mm LTR MaLR 1 399 -8 1 1603 4862 78 10 32 chr5 133499126 133499806 -19037453 - L1_Mus2 LINE L1 0 6566 5902 1 1603 1499 93 0 0 chr5 133499807 133500000 -19037259 + L1_Mm LINE L1 5481 5673 -210 1 1603 1771 46 28 0 chr5 133500000 133500218 -19037041 + L1_Mus3 LINE L1 5674 5897 -741 1 1603 349 327 48 60 chr5 133500384 133500550 -19036709 - B4 SINE B4 -120 172 9 2 1603 1525 223 48 43 chr5 133501926 133502301 -19034958 + MTEa LTR MaLR 1 377 -2 3 1603 616 286 66 24 chr5 133502376 133502587 -19034672 - ID_B1 SINE B4 -2 222 3 4 1603 538 253 5 76 chr5 133502667 133502851 -19034408 + MTEa LTR MaLR 5 175 -204 5 1603 387 60 0 0 chr5 133502917 133502967 -19034292 + (CA)n Simple_repeat Simple_repeat 1 50 0 6 1603 240 59 0 0 chr5 133502967 133503001 -19034258 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1603 323 252 92 74 chr5 133503049 133503212 -19034047 + MTEa LTR MaLR 193 358 -21 5 1603 447 68 0 0 chr5 133503272 133503331 -19033928 + (TG)n Simple_repeat Simple_repeat 2 60 0 8 1603 344 349 83 0 chr5 133503350 133503482 -19033777 - RSINE1 SINE B4 -14 151 9 9 1603 815 194 24 73 chr5 133503586 133503792 -19033467 - B3A SINE B2 0 198 3 1 1603 241 267 115 39 chr5 133504317 133504395 -19032864 + B4 SINE B4 2 85 -207 1 1603 1723 152 50 74 chr5 133504437 133504800 -19032459 + ORR1B1 LTR MaLR 41 394 0 1 1603 386 282 50 25 chr5 133504802 133504861 -19032398 + B4 SINE B4 154 216 -76 1 1603 288 0 0 0 chr5 133504861 133504893 -19032366 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1603 386 282 50 25 chr5 133504893 133504953 -19032306 + B4 SINE B4 217 276 -16 1 1603 320 344 0 0 chr5 133505037 133505127 -19032132 - ID_B1 SINE B4 -38 186 97 1 1603 460 236 84 22 chr5 133505161 133505339 -19031920 + B2_Mm2 SINE B2 1 189 -6 1 1603 387 60 0 0 chr5 133505624 133505674 -19031585 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1603 936 287 24 38 chr5 133506159 133506449 -19030810 - B4 SINE B4 -5 287 2 1 1603 1384 239 33 7 chr5 133506685 133506988 -19030271 - Lx2B LINE L1 -2 6998 6688 1 1603 755 196 32 5 chr5 133506985 133507170 -19030089 - Lx2B LINE L1 -809 6191 6002 1 1603 907 114 0 0 chr5 133507167 133507298 -19029961 + Lx2B LINE L1 5853 5983 -1017 1 1603 252 0 0 0 chr5 133507315 133507343 -19029916 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1603 465 222 19 11 chr5 133507352 133507478 -19029781 - B3A SINE B2 -57 138 7 2 1603 873 171 0 86 chr5 133508279 133508477 -19028782 + ORR1C1 LTR MaLR 1 181 -197 2 1603 392 175 0 38 chr5 133508483 133508540 -19028719 + polypyrimidine Low_complexity Low_complexity 71 126 0 2 1603 1033 84 0 22 chr5 133508540 133508722 -19028537 + (TC)n Simple_repeat Simple_repeat 2 179 0 2 1603 392 175 0 38 chr5 133508722 133508795 -19028464 + polypyrimidine Low_complexity Low_complexity 1 70 0 2 1603 1075 176 10 15 chr5 133508799 133509001 -19028258 + ORR1C1 LTR MaLR 166 366 -12 2 1603 978 151 204 0 chr5 133509609 133509795 -19027464 - URR1A DNA MER1_type -2 224 1 2 1603 1024 247 33 147 chr5 133510524 133510952 -19026307 - MTE2a LTR MaLR 0 379 1 2 1603 856 242 100 13 chr5 133511085 133511315 -19025944 - MTEa LTR MaLR -120 259 10 2 1603 719 255 33 33 chr5 133511318 133511529 -19025730 + B3 SINE B2 1 211 -5 2 1603 764 180 0 6 chr5 133511779 133511941 -19025318 + CT-rich Low_complexity Low_complexity 4 164 0 2 1603 381 164 0 0 chr5 133512014 133512087 -19025172 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 1603 273 231 39 0 chr5 133512548 133512652 -19024607 + CT-rich Low_complexity Low_complexity 3 110 0 3 1603 551 246 8 8 chr5 133512655 133512778 -19024481 - B1F1 SINE Alu -22 127 5 3 1603 272 140 65 0 chr5 133513453 133513560 -19023699 + (TCTA)n Simple_repeat Simple_repeat 1 114 0 3 1603 999 197 39 0 chr5 133513609 133513787 -19023472 + Lx8 LINE L1 7124 7308 -165 3 1603 272 268 0 14 chr5 133513831 133513903 -19023356 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 3 1603 753 286 86 43 chr5 133513907 133514163 -19023096 - B4A SINE B4 -12 280 14 3 1603 201 74 0 0 chr5 133514251 133514278 -19022981 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1603 298 203 0 33 chr5 133514300 133514361 -19022898 + MER2 DNA MER2_type 271 329 -16 3 1603 757 268 69 23 chr5 133514763 133515023 -19022236 + B4A SINE B4 2 273 -19 3 1603 302 259 17 46 chr5 133515519 133515693 -19021566 + (CATATA)n Simple_repeat Simple_repeat 6 174 0 4 1603 212 184 20 0 chr5 133515726 133515775 -19021484 + (TA)n Simple_repeat Simple_repeat 2 51 0 4 1603 687 78 0 0 chr5 133515936 133516026 -19021233 - 4.5SRNA scRNA scRNA -2 92 3 4 1603 216 267 80 0 chr5 133516126 133516201 -19021058 - MIRm SINE MIR -128 148 68 4 1603 416 242 85 18 chr5 133516406 133516570 -19020689 - RMER15 LTR ERVL -65 510 336 4 1603 464 287 32 51 chr5 133516998 133517012 -19020247 - RSINE1 SINE B4 -9 156 144 4 1603 219 69 0 0 chr5 133517012 133517041 -19020218 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1603 464 287 32 51 chr5 133517041 133517184 -19020075 - RSINE1 SINE B4 -22 143 2 4 1603 625 292 99 23 chr5 133517257 133517600 -19019659 - L1MC4a LINE L1 -1710 6172 5804 4 1603 248 229 53 76 chr5 133517605 133517737 -19019522 + L1M5 LINE L1 2912 3040 -3106 4 1603 500 305 82 35 chr5 133517740 133517971 -19019288 + B4A SINE B4 2 243 -49 4 1603 207 139 0 0 chr5 133518021 133518057 -19019202 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1603 363 280 10 39 chr5 133518097 133518201 -19019058 + PB1D10 SINE Alu 3 103 -14 5 1603 939 178 24 6 chr5 133518235 133518399 -19018860 + B3A SINE B2 2 168 -30 5 1603 564 53 0 0 chr5 133518403 133518479 -19018780 + (CA)n Simple_repeat Simple_repeat 1 76 0 5 1603 2909 70 55 0 chr5 133518492 133518891 -19018368 + BGLII LTR ERVK 1 421 0 5 1603 207 0 0 0 chr5 133518905 133518928 -19018331 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1603 274 303 64 84 chr5 133518983 133519185 -19018074 + L1M5 LINE L1 4589 4786 -1360 4 1603 1158 78 0 0 chr5 133519193 133519373 -19017886 + (GA)n Simple_repeat Simple_repeat 1 180 0 5 1603 192 227 22 11 chr5 133519373 133519462 -19017797 + GA-rich Low_complexity Low_complexity 1 90 0 5 1603 23 0 0 0 chr5 133519502 133519525 -19017734 + AT_rich Low_complexity Low_complexity 1 23 0 5 1603 266 316 62 10 chr5 133519763 133519859 -19017400 + RMER12 LTR ERVK 750 850 -472 5 1603 264 170 0 0 chr5 133519859 133519912 -19017347 + (TA)n Simple_repeat Simple_repeat 2 54 0 6 1603 22 0 0 0 chr5 133520044 133520066 -19017193 + AT_rich Low_complexity Low_complexity 1 22 0 6 1603 231 250 0 0 chr5 133520287 133520339 -19016920 + CT-rich Low_complexity Low_complexity 4 55 0 6 1603 370 229 38 76 chr5 133520342 133520474 -19016785 - B1F SINE Alu 0 149 23 6 1603 449 213 0 0 chr5 133520384 133520478 -19016781 - ID_B1 SINE B4 -31 193 100 6 1603 207 0 0 0 chr5 133520478 133520501 -19016758 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1603 636 59 0 0 chr5 133521147 133521232 -19016027 + (GA)n Simple_repeat Simple_repeat 2 86 0 6 1603 26 0 0 0 chr5 133522230 133522256 -19015003 + AT_rich Low_complexity Low_complexity 1 26 0 6 1603 1181 176 11 23 chr5 133522293 133522672 -19014587 + ZP3AR Satellite Satellite 1 374 0 6 1603 533 229 8 16 chr5 133523002 133523126 -19014133 + ORR1E LTR MaLR 1 123 -236 6 1603 492 256 57 7 chr5 133523138 133523292 -19013967 + ORR1E LTR MaLR 164 348 -31 6 1603 274 227 185 74 chr5 133523279 133523307 -19013952 - B2_Mm1t SINE B2 -9 184 152 7 1603 432 0 0 0 chr5 133523307 133523355 -19013904 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1603 546 227 185 74 chr5 133523355 133523488 -19013771 - B3A SINE B2 -42 151 5 7 1603 271 388 51 46 chr5 133523587 133523784 -19013475 + MLT1G LTR MaLR 7 204 -387 7 1603 1279 279 31 3 chr5 133523792 133524141 -19013118 - MTEa LTR MaLR -2 377 19 7 1603 231 342 55 0 chr5 133524224 133524297 -19012962 + RSINE1 SINE B4 42 118 -47 7 1603 504 111 0 0 chr5 133524336 133524417 -19012842 + (CA)n Simple_repeat Simple_repeat 2 82 0 7 1603 270 56 0 0 chr5 133525041 133525077 -19012182 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1603 1101 124 222 0 chr5 133525511 133525696 -19011563 - URR1A DNA MER1_type 0 226 1 7 1603 733 295 73 91 chr5 133526529 133526913 -19010346 - MTE2a LTR MaLR -2 377 1 7 1603 21 36 0 0 chr5 133527040 133527068 -19010191 + AT_rich Low_complexity Low_complexity 1 28 0 7 1603 197 98 0 24 chr5 133527254 133527296 -19009963 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 8 1603 345 350 8 0 chr5 133527837 133527957 -19009302 + B4A SINE B4 24 144 -148 8 1603 210 216 39 0 chr5 133528029 133528080 -19009179 + GA-rich Low_complexity Low_complexity 3 55 0 8 1603 201 74 0 0 chr5 133528263 133528290 -19008969 + (TTCCC)n Simple_repeat Simple_repeat 4 30 0 8 1603 494 250 144 0 chr5 133528300 133528480 -19008779 - ID_B1 SINE B4 -15 209 4 8 1603 663 213 255 25 chr5 133529135 133529412 -19007847 - MTD LTR MaLR 0 419 79 8 1603 873 229 5 11 chr5 133529539 133529724 -19007535 - ID_B1 SINE B4 0 224 41 8 1603 543 220 0 0 chr5 133529724 133529856 -19007403 + (CA)n Simple_repeat Simple_repeat 2 133 0 8 1603 2258 158 128 9 chr5 133530247 133530714 -19006545 - RMER4B LTR ERVK 0 585 63 8 1603 375 286 18 0 chr5 133530985 133531097 -19006162 + B1F SINE Alu 33 146 -3 8 1603 804 240 19 47 chr5 133531097 133531311 -19005948 + B3 SINE B2 4 211 -5 9 1603 307 210 269 75 chr5 133531503 133531637 -19005622 - ORR1E LTR MaLR -6 373 214 9 1603 461 315 9 62 chr5 133531918 133532128 -19005131 + MTD LTR MaLR 5 203 -216 9 1603 663 276 6 6 chr5 133532135 133532299 -19004960 + B3A SINE B2 7 170 -28 9 1603 288 0 0 0 chr5 133532304 133532336 -19004923 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1603 406 275 58 0 chr5 133532424 133532544 -19004715 + MTD LTR MaLR 293 419 0 9 1603 30 0 0 0 chr5 133532977 133533007 -19004252 + AT_rich Low_complexity Low_complexity 1 30 0 9 1603 393 39 0 0 chr5 133533108 133533159 -19004100 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1603 1075 245 54 74 chr5 133533183 133533536 -19003723 - ORR1E LTR MaLR -10 349 4 9 1603 402 278 111 69 chr5 133533541 133533810 -19003449 - B4A SINE B4 0 292 11 9 1603 266 268 0 0 chr5 133533817 133533899 -19003360 + CT-rich Low_complexity Low_complexity 2 83 0 9 1603 627 51 0 0 chr5 133533900 133533979 -19003280 + (TCC)n Simple_repeat Simple_repeat 3 81 0 1 1603 587 164 16 0 chr5 133534361 133534483 -19002776 + (TATG)n Simple_repeat Simple_repeat 2 125 0 1 1603 374 262 82 116 chr5 133534699 133534906 -19002353 - ORR1E LTR MaLR -159 200 1 9 1603 287 136 24 36 chr5 133535828 133535912 -19001347 + CT-rich Low_complexity Low_complexity 2 84 0 1 1603 1371 247 94 6 chr5 133536291 133536633 -19000626 - MTEa LTR MaLR -7 372 1 1 1603 439 312 106 30 chr5 133536758 133537022 -19000237 + B4A SINE B4 5 288 -4 1 1603 446 267 29 0 chr5 133537217 133537322 -18999937 - PB1D7 SINE Alu 0 120 13 1 1603 243 288 80 9 chr5 133537359 133537471 -18999788 - L1MB5 LINE L1 -7 6167 6048 1 1603 576 316 6 19 chr5 133537471 133537629 -18999630 + B3A SINE B2 2 157 -41 1 1603 360 0 0 0 chr5 133537633 133537673 -18999586 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1603 306 301 62 0 chr5 133537699 133537812 -18999447 - L1MB5 LINE L1 -119 6055 5936 1 1603 1219 64 6 12 chr5 133537813 133537826 -18999433 - B2_Mm2 SINE B2 -23 172 159 1 1603 369 0 0 0 chr5 133537826 133537867 -18999392 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1 1603 1219 64 6 12 chr5 133537867 133538026 -18999233 - B2_Mm2 SINE B2 -37 158 1 1 1603 513 248 0 17 chr5 133538155 133538270 -18998989 - PB1D10 SINE Alu -3 114 2 1 1603 280 286 0 0 chr5 133538877 133538940 -18998319 - ID4 SINE ID -19 64 2 1 1603 461 306 24 62 chr5 133538898 133539163 -18998096 - ZP3AR Satellite Satellite -21 254 1 1 1603 576 190 65 7 chr5 133539163 133539301 -18997958 - B1F SINE Alu -3 146 1 1 1603 395 165 9 27 chr5 133540035 133540147 -18997112 + (TG)n Simple_repeat Simple_repeat 2 111 0 1 1603 675 271 7 141 chr5 133540201 133540273 -18996986 + B4 SINE B4 10 82 -210 1 1603 189 107 0 0 chr5 133540273 133540301 -18996958 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1 1603 675 271 7 141 chr5 133540301 133540452 -18996807 + B4 SINE B4 83 216 -76 1 1603 294 95 0 0 chr5 133540452 133540494 -18996765 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 1 1603 675 271 7 141 chr5 133540494 133540566 -18996693 + B4 SINE B4 217 266 -26 1 1603 180 0 0 0 chr5 133540620 133540640 -18996619 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1603 1014 152 0 0 chr5 133541010 133541187 -18996072 + CT-rich Low_complexity Low_complexity 2 178 0 1 1603 1116 133 0 0 chr5 133541188 133541368 -18995891 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1 1603 507 33 0 0 chr5 133541368 133541429 -18995830 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1603 333 0 0 0 chr5 133541429 133541466 -18995793 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1603 471 261 84 45 chr5 133541555 133541816 -18995443 - MTEa LTR MaLR 0 379 86 1 1603 5466 149 89 12 chr5 133541817 133542802 -18994457 - Lx5 LINE L1 -133 5744 4684 1 1603 1655 159 16 2 chr5 133542797 133543110 -18994149 + Lx5 LINE L1 5747 6079 -930 1 1603 238 247 47 58 chr5 133543637 133543723 -18993536 - MTE2a LTR MaLR -23 356 272 1 1603 477 0 0 0 chr5 133544042 133544095 -18993164 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 1 1603 317 221 143 0 chr5 133544223 133544300 -18992959 + PB1D10 SINE Alu 1 88 -29 1 1603 507 207 68 74 chr5 133544334 133544496 -18992763 - MTE2a LTR MaLR -213 166 6 1 1603 960 259 50 69 chr5 133544706 133545083 -18992176 - ORR1D2 LTR MaLR 0 370 1 1 1603 413 326 86 0 chr5 133545083 133545253 -18992006 - MER2 DNA MER2_type -45 300 116 1 1603 474 65 0 0 chr5 133545418 133545480 -18991779 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 1 1603 561 30 0 0 chr5 133545538 133545605 -18991654 + (TC)n Simple_repeat Simple_repeat 1 67 0 1 1603 340 326 7 14 chr5 133545607 133545753 -18991506 + (TCCA)n Simple_repeat Simple_repeat 4 148 0 1 1603 271 305 80 109 chr5 133546213 133546452 -18990807 + MIRb SINE MIR 25 256 -12 1 1603 256 210 0 61 chr5 133546811 133546900 -18990359 + (TGGA)n Simple_repeat Simple_repeat 1 83 0 1 1603 192 258 15 22 chr5 133546947 133547082 -18990177 + (TGGA)n Simple_repeat Simple_repeat 4 137 0 1 1603 472 318 6 11 chr5 133547137 133547315 -18989944 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 1 1603 717 268 36 39 chr5 133547353 133547633 -18989626 - L1MA4 LINE L1 -368 5932 5654 1 1603 614 293 120 41 chr5 133547880 133548147 -18989112 + B4A SINE B4 1 288 -4 1 1603 1105 243 36 36 chr5 133548693 133549026 -18988233 - MTE2b LTR MaLR -41 338 6 1 1603 258 105 0 0 chr5 133549185 133549223 -18988036 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1603 794 299 73 15 chr5 133549931 133550203 -18987056 + B4A SINE B4 2 289 -3 1 1603 303 140 0 0 chr5 133550227 133550277 -18986982 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1603 2156 155 35 5 chr5 133550803 133551172 -18986087 - RLTR14 LTR ERV1 0 382 3 1 1603 1008 238 179 13 chr5 133551229 133551531 -18985728 - MTEa LTR MaLR -8 371 20 1 1603 545 199 12 34 chr5 133551772 133552100 -18985159 + CT-rich Low_complexity Low_complexity 1 320 0 1 1603 838 109 7 7 chr5 133552125 133552263 -18984996 + (TTTC)n Simple_repeat Simple_repeat 2 139 0 1 1603 219 274 64 0 chr5 133552294 133552391 -18984868 - B1F1 SINE Alu -8 112 1 1 1603 906 255 144 15 chr5 133552428 133552755 -18984504 - MTE2a LTR MaLR -10 369 1 1 1603 232 235 14 56 chr5 133553047 133553119 -18984140 - B4A SINE B4 -10 282 214 1 1603 686 263 6 17 chr5 133553121 133553299 -18983960 - B3 SINE B2 0 216 41 1 1603 618 273 116 26 chr5 133553452 133553637 -18983622 - L1M1 LINE L1 -359 5797 5600 1 1603 351 0 0 0 chr5 133553637 133553676 -18983583 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1603 618 289 42 0 chr5 133553676 133553723 -18983536 - L1M1 LINE L1 -704 5599 5546 1 1603 1495 256 58 32 chr5 133553756 133554225 -18983034 - Lx8 LINE L1 0 7473 6993 1 1603 271 235 88 66 chr5 133554676 133554767 -18982492 - RSINE1 SINE B4 -69 96 4 1 1603 189 344 6 0 chr5 133555299 133555379 -18981880 - MIR SINE MIR -129 147 66 1 1603 832 294 23 87 chr5 133556195 133556504 -18980755 + B4 SINE B4 2 290 -2 1 1603 738 50 0 0 chr5 133556543 133556642 -18980617 + (CA)n Simple_repeat Simple_repeat 2 100 0 1 1603 273 320 55 60 chr5 133558004 133558187 -18979072 + MTEa LTR MaLR 184 365 -14 1 1603 763 276 15 5 chr5 133558257 133558457 -18978802 + B3 SINE B2 2 203 -13 1 1603 2696 99 52 0 chr5 133558480 133558884 -18978375 - L1_Mus3 LINE L1 -12 6626 6202 1 1603 718 292 5 29 chr5 133559290 133559302 -18977957 - ID_B1 SINE B4 -7 217 208 1 1603 312 27 0 0 chr5 133559302 133559339 -18977920 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 1 1603 718 292 5 29 chr5 133559339 133559534 -18977725 - ID_B1 SINE B4 -17 207 15 1 1603 300 309 0 24 chr5 133559518 133559616 -18977643 - ID_B1 SINE B4 -52 172 82 1 1603 229 227 67 22 chr5 133559953 133560043 -18977216 - ORR1C2 LTR MaLR -285 99 6 1 1603 1345 146 5 5 chr5 133561971 133562185 -18975074 - MTEa LTR MaLR -6 373 160 1 200 913 212 3 47 chr5 133562184 133562397 -18974862 - MTEa LTR MaLR -141 238 35 1 1604 198 0 0 0 chr5 133562431 133562453 -18974806 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1604 1853 182 62 34 chr5 133563159 133563598 -18973661 + RLTR17 LTR ERVK 105 555 -137 1 1604 778 223 129 61 chr5 133563815 133564126 -18973133 + RLTR20B3 LTR ERVK 21 352 -225 1 1604 1089 243 93 29 chr5 133564189 133564533 -18972726 - MTD LTR MaLR -36 383 18 1 1604 579 256 15 0 chr5 133564838 133564975 -18972284 - B3A SINE B2 -59 139 1 1 1604 216 193 0 17 chr5 133565099 133565109 -18972150 + (TA)n Simple_repeat Simple_repeat 2 11 0 1 1604 4528 66 0 0 chr5 133565109 133565671 -18971588 + L1Md_T LINE L1 6018 6579 -3 1 1604 216 193 0 17 chr5 133565671 133565699 -18971560 + (TA)n Simple_repeat Simple_repeat 2 29 0 1 1604 1154 62 0 7 chr5 133565699 133565845 -18971414 + B1_Mus2 SINE Alu 1 145 -2 1 1604 216 193 0 17 chr5 133565845 133565863 -18971396 + (TA)n Simple_repeat Simple_repeat 2 19 0 1 1604 558 289 28 44 chr5 133565884 133566065 -18971194 - B3A SINE B2 -18 180 3 1 1604 745 168 33 65 chr5 133566080 133566233 -18971026 - B1_Mus1 SINE Alu 0 148 1 1 1604 221 314 0 82 chr5 133566400 133566473 -18970786 - B4A SINE B4 -146 146 80 1 1604 299 244 58 11 chr5 133566568 133566655 -18970604 - MTD LTR MaLR -15 404 314 1 1604 305 205 24 17 chr5 133567046 133567128 -18970131 - MTD LTR MaLR -78 343 260 1 1604 703 313 56 12 chr5 133567157 133567406 -18969853 - MTD LTR MaLR -136 283 24 1 1604 229 262 15 15 chr5 133567412 133567478 -18969781 - ID SINE ID -155 69 4 1 1604 521 321 6 35 chr5 133567785 133567959 -18969300 + B4A SINE B4 1 169 -123 1 1604 1760 203 66 38 chr5 133567968 133568452 -18968807 + RMER4B LTR ERVK 17 451 -15 1 1604 314 344 7 52 chr5 133568468 133568603 -18968656 + B4A SINE B4 164 292 0 1 1604 325 314 92 82 chr5 133569338 133569522 -18967737 + B4A SINE B4 2 187 -105 1 1604 265 131 33 0 chr5 133569633 133569694 -18967565 + (CA)n Simple_repeat Simple_repeat 2 64 0 1 1604 350 382 17 41 chr5 133570058 133570230 -18967029 - B4A SINE B4 -123 169 2 1 1604 934 240 45 19 chr5 133570276 133570561 -18966698 + ORR1E LTR MaLR 5 327 -52 1 1604 460 248 181 9 chr5 133570928 133571220 -18966039 - MTEa LTR MaLR -5 374 16 1 1604 441 333 46 92 chr5 133571220 133571262 -18965997 - MTE2a LTR MaLR -5 374 337 1 1604 1873 131 141 28 chr5 133571262 133571616 -18965643 + ORR1B1 LTR MaLR 1 394 0 1 1604 441 333 46 92 chr5 133571616 133571963 -18965296 - MTE2a LTR MaLR -43 336 3 1 1604 21 0 0 0 chr5 133572651 133572672 -18964587 + AT_rich Low_complexity Low_complexity 1 21 0 1 1604 270 299 59 8 chr5 133572908 133573026 -18964233 + B1F SINE Alu 1 124 -25 1 1604 1491 57 11 28 chr5 133573054 133573551 -18963708 + ZP3AR Satellite Satellite 1 488 0 1 1604 277 271 71 0 chr5 133573553 133573623 -18963636 + tRNA-Ala-GCY_ tRNA tRNA 1 75 0 1 1604 203 271 0 17 chr5 133573625 133573685 -18963574 + GA-rich Low_complexity Low_complexity 2 60 0 1 1604 544 250 29 7 chr5 133573997 133574134 -18963125 - B1F SINE Alu -7 142 3 1 1604 1216 176 16 9 chr5 133574158 133574546 -18962713 - ZP3AR Satellite Satellite -44 391 1 1 1604 212 250 0 37 chr5 133574989 133575043 -18962216 + T-rich Low_complexity Low_complexity 4 55 0 1 1604 465 353 0 0 chr5 133575121 133575277 -18961982 + RSINE1 SINE B4 2 157 -8 1 1604 204 97 0 0 chr5 133575291 133575322 -18961937 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1604 1326 158 22 106 chr5 133575550 133575861 -18961398 + ORR1B1 LTR MaLR 102 386 -8 2 1604 1536 246 11 14 chr5 133575877 133576240 -18961019 - Lx8 LINE L1 -458 7015 6654 2 1604 1000 244 100 15 chr5 133576714 133576829 -18960430 + Lx8 LINE L1 6822 6963 -510 2 1604 333 0 0 0 chr5 133576829 133576866 -18960393 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1604 1000 244 100 15 chr5 133576866 133577021 -18960238 + Lx8 LINE L1 6964 7114 -359 2 1604 1251 238 52 10 chr5 133577525 133577835 -18959424 + ORR1E LTR MaLR 1 323 -36 2 1604 298 282 14 0 chr5 133577943 133578014 -18959245 + ID4_ SINE ID 12 83 0 2 1604 253 240 154 89 chr5 133578243 133578272 -18958987 - B2_Mm1t SINE B2 -3 190 161 2 1604 390 57 0 0 chr5 133578272 133578325 -18958934 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1604 591 222 46 34 chr5 133578325 133578478 -18958781 - B3A SINE B2 -33 160 1 2 1604 347 339 5 72 chr5 133578918 133579112 -18958147 + B4 SINE B4 13 192 -100 2 1604 496 206 183 20 chr5 133579112 133579295 -18957964 + B3A SINE B2 1 216 0 2 1604 323 292 0 26 chr5 133579858 133579974 -18957285 + (CTGTG)n Simple_repeat Simple_repeat 4 116 0 2 1604 293 281 62 20 chr5 133580121 133580234 -18957025 - MTEa LTR MaLR 0 379 262 2 1604 336 64 0 0 chr5 133580443 133580490 -18956769 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 1604 288 301 0 12 chr5 133580518 133580602 -18956657 - B4A SINE B4 -10 282 200 2 1604 628 295 48 13 chr5 133580618 133580808 -18956451 - B3A SINE B2 -7 188 1 2 1604 262 316 20 40 chr5 133580887 133580986 -18956273 - B4A SINE B4 -191 101 5 2 1604 8340 85 25 16 chr5 133581073 133582255 -18955004 - Lx3_Mus LINE L1 0 7009 5817 2 1604 2024 83 6 11 chr5 133582255 133582540 -18954719 + L1MB5 LINE L1 5636 5942 -232 2 1604 330 26 0 0 chr5 133582562 133582601 -18954658 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2 1604 317 261 0 0 chr5 133582604 133582669 -18954590 - tRNA-Ala-GCY_ tRNA tRNA -9 66 2 2 1604 180 0 0 0 chr5 133583351 133583371 -18953888 + (TC)n Simple_repeat Simple_repeat 1 20 0 2 1604 306 152 0 0 chr5 133583371 133583430 -18953829 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1604 914 216 65 10 chr5 133583660 133583861 -18953398 - ID_B1 SINE B4 -1 223 12 2 1604 297 287 31 170 chr5 133584341 133584635 -18952624 - ORR1E LTR MaLR -5 354 102 2 1604 270 169 17 0 chr5 133584677 133584736 -18952523 - U2 snRNA snRNA -128 60 1 2 1604 444 267 20 10 chr5 133585191 133585293 -18951966 - RSINE1 SINE B4 -60 105 3 2 1604 357 24 0 0 chr5 133585317 133585359 -18951900 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1604 509 62 0 24 chr5 133585359 133585441 -18951818 + (CAGAGA)n Simple_repeat Simple_repeat 3 83 0 2 1604 913 263 47 29 chr5 133585474 133585752 -18951507 - B4A SINE B4 -8 284 2 2 1604 527 316 88 67 chr5 133586254 133586349 -18950910 - B4A SINE B4 0 292 202 2 1604 1037 168 89 0 chr5 133586349 133586552 -18950707 - URR1B DNA MER1_type 0 225 5 2 1604 527 316 88 67 chr5 133586552 133586741 -18950518 - B4A SINE B4 -91 201 2 2 1604 270 326 0 120 chr5 133586757 133586966 -18950293 - L1MD2 LINE L1 -13 6346 6163 2 1604 580 143 0 20 chr5 133586970 133587113 -18950146 + CT-rich Low_complexity Low_complexity 1 140 0 2 1604 363 296 136 0 chr5 133587114 133587239 -18950020 - B1F1 SINE Alu -5 144 3 2 1604 765 85 0 0 chr5 133587249 133587355 -18949904 + (TC)n Simple_repeat Simple_repeat 2 107 0 2 1604 599 247 131 20 chr5 133587498 133587696 -18949563 - B4A SINE B4 -68 224 5 2 1604 984 242 74 7 chr5 133588524 133588794 -18948465 + B4A SINE B4 1 288 -4 2 1604 423 279 0 0 chr5 133589033 133589137 -18948122 + PB1D10 SINE Alu 11 114 -3 2 1604 747 274 5 59 chr5 133589140 133589361 -18947898 + ID_B1 SINE B4 1 209 -15 2 1604 414 0 0 0 chr5 133589701 133589747 -18947512 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1604 685 283 60 36 chr5 133590108 133590348 -18946911 + L1MA4A LINE L1 5621 5867 -436 2 1604 1043 231 82 112 chr5 133590348 133590739 -18946520 + MTE2a LTR MaLR 1 379 0 2 1604 685 283 60 36 chr5 133590739 133590799 -18946460 + L1MA4A LINE L1 5868 5928 -375 2 1604 491 314 44 26 chr5 133591178 133591404 -18945855 + B4A SINE B4 5 234 -58 2 1604 3291 51 0 14 chr5 133591445 133591866 -18945393 + L1Md_F2 LINE L1 6168 6582 0 2 1604 506 323 37 31 chr5 133592065 133592087 -18945172 - RSINE1 SINE B4 0 165 148 2 1604 306 0 0 0 chr5 133592087 133592121 -18945138 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1604 506 323 37 31 chr5 133592121 133592261 -18944998 - RSINE1 SINE B4 -18 147 2 2 1604 705 296 44 0 chr5 133593337 133593540 -18943719 + ID_B1 SINE B4 8 219 -5 2 1604 221 83 0 27 chr5 133593541 133593578 -18943681 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2 1604 754 280 5 5 chr5 133593587 133593795 -18943464 + ID_B1 SINE B4 11 218 -6 2 1604 221 256 135 71 chr5 133593847 133593973 -18943286 + MIRm SINE MIR 4 137 -139 2 1604 323 275 11 11 chr5 133594001 133594093 -18943166 + PB1D10 SINE Alu 25 116 -1 2 1604 454 304 12 30 chr5 133594246 133594393 -18942866 + B4A SINE B4 12 155 -137 2 1604 1087 241 151 19 chr5 133594393 133594757 -18942502 + MTD LTR MaLR 3 414 -5 2 1604 226 254 34 0 chr5 133594771 133594830 -18942429 + B4 SINE B4 168 228 -64 2 1604 549 281 0 9 chr5 133594850 133594965 -18942294 + RSINE1 SINE B4 48 161 -4 2 1604 183 205 0 0 chr5 133595359 133595398 -18941861 + T-rich Low_complexity Low_complexity 1 39 0 2 1604 180 352 22 11 chr5 133596001 133596090 -18941169 + MIRc SINE MIR 68 157 -111 2 1604 311 275 9 9 chr5 133596170 133596280 -18940979 + B1F SINE Alu 40 149 0 2 1604 346 309 27 7 chr5 133596292 133596442 -18940817 + GA-rich Low_complexity Low_complexity 2 154 0 2 1604 476 85 10 50 chr5 133596444 133596543 -18940716 + (GGAA)n Simple_repeat Simple_repeat 1 95 0 2 1604 280 316 0 78 chr5 133597001 133597104 -18940155 + PB1 SINE Alu 17 111 -16 2 1604 501 271 8 8 chr5 133597175 133597294 -18939965 + ZP3AR Satellite Satellite 7 125 -87 2 1604 757 318 28 0 chr5 133597332 133597549 -18939710 + B4A SINE B4 50 272 -20 2 1604 664 303 130 10 chr5 133598108 133598401 -18938858 + MTD LTR MaLR 36 363 -56 2 1604 2408 137 58 11 chr5 133598411 133598787 -18938472 - ORR1B1 LTR MaLR 0 394 1 2 1604 243 0 0 0 chr5 133598799 133598826 -18938433 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2 1604 949 105 45 0 chr5 133598826 133598959 -18938300 - B1_Mus2 SINE Alu -8 139 1 2 1604 516 32 0 0 chr5 133598960 133599022 -18938237 + (TTTTC)n Simple_repeat Simple_repeat 4 65 0 2 1604 1047 70 35 0 chr5 133599022 133599193 -18938066 + (TTC)n Simple_repeat Simple_repeat 1 177 0 2 1604 1511 248 32 8 chr5 133599435 133599805 -18937454 + MTEa LTR MaLR 1 379 0 2 1604 198 0 0 0 chr5 133599860 133599882 -18937377 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2 1604 505 256 112 0 chr5 133600621 133600746 -18936513 - B1F SINE Alu -9 140 2 2 1604 366 23 0 0 chr5 133600962 133601005 -18936254 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1604 359 301 36 43 chr5 133601006 133601145 -18936114 - RSINE1 SINE B4 -25 140 3 2 1604 1137 257 95 6 chr5 133601307 133601655 -18935604 - MTEb LTR MaLR 0 379 1 2 1604 3130 136 19 19 chr5 133602042 133602567 -18934692 - Lx4B LINE L1 -64 6994 6470 2 1604 639 293 6 12 chr5 133602567 133602733 -18934526 - B4A SINE B4 -126 166 2 2 1604 640 242 43 0 chr5 133603206 133603367 -18933892 + ID_B1 SINE B4 49 216 -8 2 1604 618 14 0 0 chr5 133603789 133603860 -18933399 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1604 531 0 0 0 chr5 133603860 133603918 -18933341 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1604 485 288 8 8 chr5 133603929 133604055 -18933204 - B4 SINE B4 -83 209 84 2 1604 527 221 136 0 chr5 133604133 133604273 -18932986 - B3A SINE B2 -36 162 4 2 1604 214 333 0 48 chr5 133604285 133604301 -18932958 - BC1_Mm scRNA scRNA -53 99 1 2 1604 391 244 0 23 chr5 133604301 133604389 -18932870 - B4 SINE B4 -206 86 1 2 1604 484 231 83 23 chr5 133605136 133605269 -18931990 - RSINE1 SINE B4 -21 144 4 2 1604 373 279 42 14 chr5 133605476 133605618 -18931641 + B1F2 SINE Alu 3 148 -1 2 1604 1122 182 5 10 chr5 133605625 133605917 -18931342 + ZP3AR Satellite Satellite 1 290 0 2 1604 306 279 2 0 chr5 133605874 133605945 -18931314 + ID4_ SINE ID 1 72 -11 2 1604 312 27 0 0 chr5 133605945 133605982 -18931277 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1604 255 61 0 0 chr5 133606000 133606033 -18931226 + (CACCAT)n Simple_repeat Simple_repeat 1 33 0 2 1604 267 337 102 0 chr5 133606839 133606937 -18930322 - B1F SINE Alu -41 108 1 2 1604 874 152 23 35 chr5 133607521 133607692 -18929567 - B2_Mm2 SINE B2 -26 169 1 2 1604 1085 89 0 14 chr5 133608793 133608941 -18928318 + B1_Mus1 SINE Alu 2 147 -1 2 1604 330 87 0 0 chr5 133608942 133608988 -18928271 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2 1604 493 224 0 57 chr5 133609035 133609158 -18928101 + PB1D9 SINE Alu 2 117 -3 2 1604 204 214 0 0 chr5 133609171 133609227 -18928032 + (CAGAA)n Simple_repeat Simple_repeat 1 56 0 2 1604 1562 227 148 20 chr5 133609233 133609687 -18927572 + RMER15 LTR ERVL 64 575 0 2 1604 693 271 172 12 chr5 133610358 133610608 -18926651 - B4A SINE B4 -2 290 1 2 1604 269 311 22 0 chr5 133610700 133610790 -18926469 - MER117 DNA MER1_type -38 159 68 2 1604 1085 267 37 72 chr5 133610847 133611222 -18926037 - MTEa LTR MaLR 0 379 18 2 1604 303 93 0 0 chr5 133612391 133612434 -18924825 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1604 574 271 126 19 chr5 133612473 133612680 -18924579 - B4A SINE B4 -61 231 3 2 1604 250 316 0 26 chr5 133612912 133612990 -18924269 + MTE2a LTR MaLR 1 76 -303 2 1604 1132 248 35 35 chr5 133613071 133613385 -18923874 + MTE2a LTR MaLR 57 370 -9 2 1604 407 344 37 46 chr5 133613401 133613642 -18923617 + ORR1E LTR MaLR 121 359 0 3 1604 710 246 65 93 chr5 133613681 133613972 -18923287 - B4 SINE B4 0 292 10 3 1604 684 303 59 45 chr5 133614578 133614865 -18922394 + B4A SINE B4 1 291 -1 3 1604 548 280 5 131 chr5 133614905 133615127 -18922132 + MTE2a LTR MaLR 3 196 -183 3 1604 428 299 17 0 chr5 133615179 133615296 -18921963 + MTE2a LTR MaLR 196 314 -65 3 1604 448 303 32 63 chr5 133615710 133615900 -18921359 + ORR1E LTR MaLR 6 189 -170 3 1604 241 220 0 39 chr5 133615922 133615974 -18921285 + ORR1E LTR MaLR 255 304 -75 3 1604 318 87 0 0 chr5 133615994 133616040 -18921219 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1604 468 51 0 0 chr5 133616788 133616847 -18920412 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1604 695 260 28 106 chr5 133616871 133617155 -18920104 - B4A SINE B4 -29 263 2 3 1604 1169 68 7 0 chr5 133617574 133617720 -18919539 + B1_Mus2 SINE Alu 1 147 0 3 1604 216 0 0 0 chr5 133617810 133617834 -18919425 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1604 579 172 0 0 chr5 133617837 133618000 -18919259 + GA-rich Low_complexity Low_complexity 2 164 0 3 1604 506 320 7 13 chr5 133618000 133618152 -18919107 - RSINE1 SINE B4 -12 153 3 3 1604 483 255 9 0 chr5 133618340 133618446 -18918813 + B4A SINE B4 1 107 -185 3 1604 743 115 32 32 chr5 133619163 133619895 -18917364 + (TG)n Simple_repeat Simple_repeat 1 732 0 3 1604 608 274 73 5 chr5 133620048 133620253 -18917006 + ID_B1 SINE B4 2 220 -4 3 1604 669 250 60 11 chr5 133620365 133620547 -18916712 - B3A SINE B2 -3 195 5 3 1604 232 333 63 21 chr5 133620713 133620808 -18916451 + MLT1H LTR MaLR 63 161 -388 3 1604 207 204 0 0 chr5 133620913 133620962 -18916297 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1604 392 275 38 38 chr5 133620972 133621078 -18916181 - B4 SINE B4 0 292 187 3 1604 492 259 9 0 chr5 133621082 133621190 -18916069 - ZP3AR Satellite Satellite -66 146 38 3 1604 218 325 12 35 chr5 133621278 133621364 -18915895 - B1F1 SINE Alu -42 107 24 3 1604 255 160 40 50 chr5 133621521 133621620 -18915639 + (TA)n Simple_repeat Simple_repeat 1 98 0 3 1604 1099 246 53 98 chr5 133621803 133622054 -18915205 - MTD LTR MaLR -14 405 157 3 1604 1363 150 367 13 chr5 133622054 133622365 -18914894 - MTC LTR MaLR 0 421 1 3 1604 1099 246 53 98 chr5 133622365 133622509 -18914750 - MTD LTR MaLR -263 156 28 3 1604 291 104 0 0 chr5 133622509 133622557 -18914702 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1604 390 346 72 52 chr5 133622637 133622708 -18914551 + MTEa LTR MaLR 1 70 -300 3 1604 318 26 0 0 chr5 133622708 133622747 -18914512 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1604 431 294 47 53 chr5 133622747 133623038 -18914221 + MTEa LTR MaLR 71 379 0 3 1604 524 15 0 15 chr5 133624049 133624115 -18913144 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 1604 765 150 0 0 chr5 133624157 133624337 -18912922 + (GA)n Simple_repeat Simple_repeat 1 180 0 3 1604 431 214 69 35 chr5 133625236 133625352 -18911907 + B1F1 SINE Alu 7 126 -23 3 1604 204 125 0 0 chr5 133625353 133625385 -18911874 + (TAGGG)n Simple_repeat Simple_repeat 1 32 0 3 1604 2270 98 3 79 chr5 133625420 133625600 -18911659 - ORR1A2 LTR MaLR 0 327 156 3 1604 1184 55 0 20 chr5 133625600 133625737 -18911522 + B1_Mm SINE Alu 1 137 -10 3 1604 263 28 28 0 chr5 133625737 133625773 -18911486 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1604 2270 98 3 79 chr5 133625783 133625956 -18911303 - ORR1A2 LTR MaLR -172 155 1 3 1604 2309 98 3 6 chr5 133626321 133626648 -18910611 + IAPLTR3 LTR ERVK 1 326 0 3 1604 528 246 8 8 chr5 133626868 133626987 -18910272 - RSINE1 SINE B4 -24 141 23 3 1604 377 281 14 43 chr5 133627172 133627313 -18909946 + MamRep605 Unknown Unknown 25 161 -715 3 1604 1199 261 0 26 chr5 133627596 133627690 -18909569 + MTE2b LTR MaLR 11 104 -275 3 1604 2378 146 6 3 chr5 133627690 133628055 -18909204 + ORR1B2 LTR MaLR 1 366 -1 3 1604 1199 261 0 26 chr5 133628055 133628228 -18909031 + MTE2b LTR MaLR 105 271 -108 3 1604 532 327 99 23 chr5 133628324 133628587 -18908672 - B4A SINE B4 -8 284 2 3 1604 345 85 0 0 chr5 133629142 133629189 -18908070 - HAL1-3A_ME LINE L1 -836 2022 1976 3 1604 302 310 0 0 chr5 133629189 133629289 -18907970 + (TG)n Simple_repeat Simple_repeat 2 101 0 3 1604 474 279 0 0 chr5 133629292 133629396 -18907863 - B4 SINE B4 -2 290 187 3 1604 943 143 11 6 chr5 133629476 133629652 -18907607 + CT-rich Low_complexity Low_complexity 4 180 0 3 1604 291 160 0 0 chr5 133629650 133629725 -18907534 + (TCTCTG)n Simple_repeat Simple_repeat 3 77 0 3 1604 636 267 0 0 chr5 133629738 133629869 -18907390 - B1_Mur2 SINE Alu -18 131 1 3 1604 310 305 10 69 chr5 133629787 133629889 -18907370 - B4 SINE B4 -125 167 72 3 1604 759 149 0 0 chr5 133629887 133630008 -18907251 + B1_Mur4 SINE Alu 30 150 0 3 1604 1185 68 0 0 chr5 133630199 133630345 -18906914 + B1_Mus2 SINE Alu 2 147 0 3 1604 201 24 98 0 chr5 133630345 133630386 -18906873 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 3 1604 291 351 82 7 chr5 133631336 133631471 -18905788 + MIR SINE MIR 4 148 -114 3 1604 1327 123 30 8 chr5 133631604 133631944 -18905315 - ZP3AR Satellite Satellite -93 347 1 3 1604 570 349 55 33 chr5 133632884 133633164 -18904095 + B4 SINE B4 25 281 -11 3 1604 757 144 123 0 chr5 133633622 133633768 -18903491 + B2_Mm2 SINE B2 2 165 -30 3 1604 297 0 0 0 chr5 133633768 133633801 -18903458 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 3 1604 292 273 0 13 chr5 133633837 133633915 -18903344 + RMER30 DNA MER1_type 8 84 -118 3 1604 220 195 0 0 chr5 133633973 133634014 -18903245 + T-rich Low_complexity Low_complexity 2 42 0 3 1604 1319 248 124 46 chr5 133634048 133634572 -18902687 + Lx8 LINE L1 6904 7468 -5 3 1604 288 0 0 0 chr5 133634818 133634850 -18902409 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 1604 1214 181 42 5 chr5 133634971 133635187 -18902072 - URR1B DNA MER1_type 0 225 2 3 1604 348 266 32 16 chr5 133636819 133636945 -18900314 + RMER15 LTR ERVL 2 129 -446 3 1604 894 273 64 46 chr5 133636973 133637091 -18900168 + RMER15 LTR ERVL 244 355 -220 3 1604 1176 264 49 41 chr5 133637091 133637458 -18899801 - ORR1D2 LTR MaLR 0 370 1 3 1604 894 273 64 46 chr5 133637458 133637665 -18899594 + RMER15 LTR ERVL 356 575 0 3 1604 535 270 78 7 chr5 133638332 133638485 -18898774 + ID_B1 SINE B4 1 164 -60 3 1604 296 261 44 26 chr5 133638527 133638641 -18898618 + RMER15 LTR ERVL 2 117 -458 3 1604 5067 135 78 30 chr5 133638846 133639426 -18897833 - RMER17B LTR ERVK -3 955 351 3 1604 486 0 0 0 chr5 133639426 133639480 -18897779 + (GA)n Simple_repeat Simple_repeat 1 54 0 3 1604 5067 135 78 30 chr5 133639480 133639810 -18897449 - RMER17B LTR ERVK -608 350 2 3 1604 732 147 8 0 chr5 133641042 133641171 -18896088 + URR1B DNA MER1_type 95 224 -1 3 1604 216 238 68 45 chr5 133641651 133641675 -18895584 - ID_B1 SINE B4 -127 97 8 3 1604 218 191 78 16 chr5 133641675 133641739 -18895520 - ID4 SINE ID -8 75 8 3 1604 230 177 108 46 chr5 133642513 133642578 -18894681 - ID4_ SINE ID -14 69 1 3 1604 189 74 0 0 chr5 133642763 133642790 -18894469 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1604 356 276 0 0 chr5 133644254 133644341 -18892918 + RSINE1 SINE B4 3 89 -76 3 1604 2150 203 11 59 chr5 133644341 133644881 -18892378 + RLTR24 LTR ERV1 1 514 -15 3 1604 342 0 0 0 chr5 133644895 133644933 -18892326 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1604 520 317 66 44 chr5 133645292 133645566 -18891693 + MT2A LTR ERVL 183 462 -71 3 1604 1088 136 135 43 chr5 133645623 133645830 -18891429 - URR1A DNA MER1_type 0 226 1 3 1604 386 156 0 25 chr5 133645838 133645917 -18891342 + (CAA)n Simple_repeat Simple_repeat 2 78 0 3 1604 954 138 0 0 chr5 133645996 133646258 -18891001 + (CA)n Simple_repeat Simple_repeat 1 262 0 3 1604 812 248 29 34 chr5 133646258 133646496 -18890763 - RMER15 LTR ERVL -43 532 296 3 1604 2948 227 99 8 chr5 133646807 133647607 -18889652 - RCHARR1 DNA MER1_type -65 909 37 3 1604 779 325 59 38 chr5 133647619 133648124 -18889135 - MT2A LTR ERVL -17 516 1 3 1604 2525 177 58 6 chr5 133648161 133648662 -18888597 + RLTR11A2 LTR ERVK 1 527 0 3 1604 1811 148 152 27 chr5 133648836 133649210 -18888049 + MTC LTR MaLR 1 421 0 3 1604 287 325 0 0 chr5 133649741 133649821 -18887438 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1604 414 0 0 0 chr5 133649895 133649941 -18887318 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1604 186 43 0 0 chr5 133649944 133649967 -18887292 + (CG)n Simple_repeat Simple_repeat 2 24 0 3 1604 565 248 48 24 chr5 133649972 133650137 -18887122 - B3A SINE B2 -18 180 12 3 1604 312 27 0 0 chr5 133650327 133650364 -18886895 + (CAT)n Simple_repeat Simple_repeat 2 38 0 3 1604 216 123 16 66 chr5 133650645 133650706 -18886553 + CT-rich Low_complexity Low_complexity 4 61 0 3 1604 423 0 0 0 chr5 133650839 133650886 -18886373 + (TC)n Simple_repeat Simple_repeat 2 48 0 3 1604 227 133 0 22 chr5 133650886 133650932 -18886327 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1604 275 138 35 0 chr5 133651108 133651166 -18886093 + CT-rich Low_complexity Low_complexity 3 62 0 3 1604 386 291 135 47 chr5 133651168 133651316 -18885943 - B3A SINE B2 -36 162 2 3 1604 306 0 0 0 chr5 133651316 133651350 -18885909 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 3 1604 440 264 8 47 chr5 133651350 133651477 -18885782 - B4 SINE B4 -80 212 91 3 1604 267 31 0 0 chr5 133651719 133651751 -18885508 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1604 754 281 92 45 chr5 133652545 133652902 -18884357 - Lx8 LINE L1 -1 7472 7099 3 1604 686 241 90 31 chr5 133653467 133653690 -18883569 - Lx8 LINE L1 -349 7124 6889 3 1604 520 306 27 22 chr5 133653725 133653949 -18883310 - Lx8 LINE L1 -169 7304 7080 3 1604 257 293 12 47 chr5 133654007 133654093 -18883166 - ID4 SINE ID 0 83 1 3 1604 276 30 0 0 chr5 133654110 133654143 -18883116 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 3 1604 766 258 127 15 chr5 133654150 133654410 -18882849 - B4 SINE B4 -2 290 2 3 1604 4458 27 12 0 chr5 133654462 133654973 -18882286 - L1Md_F3 LINE L1 -2 6582 6066 4 1604 5483 45 1 0 chr5 133654973 133655640 -18881619 + L1_Mm LINE L1 2244 2911 -2972 4 1604 25 31 0 0 chr5 133655800 133655832 -18881427 + AT_rich Low_complexity Low_complexity 1 32 0 4 1604 530 292 0 0 chr5 133655834 133655971 -18881288 - ID_B1 SINE B4 -6 218 82 4 1604 627 264 187 12 chr5 133656008 133656265 -18880994 - L1MA6 LINE L1 -10 6290 5989 4 1604 449 277 94 104 chr5 133656276 133656320 -18880939 + L1MA6 LINE L1 5634 5683 -617 4 1604 522 311 6 30 chr5 133656320 133656486 -18880773 + RSINE1 SINE B4 2 163 -2 4 1604 279 0 0 0 chr5 133656491 133656522 -18880737 + (CCTA)n Simple_repeat Simple_repeat 4 34 0 4 1604 449 277 94 104 chr5 133656522 133656789 -18880470 + L1MA6 LINE L1 5689 5946 -354 4 1604 726 251 28 52 chr5 133657188 133657440 -18879819 - RMER15 LTR ERVL -54 521 276 4 1604 306 0 0 0 chr5 133657835 133657869 -18879390 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1604 294 56 0 0 chr5 133657869 133657905 -18879354 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 1604 894 162 0 0 chr5 133657906 133657998 -18879261 + polypurine Low_complexity Low_complexity 1 92 0 4 1604 1308 79 0 0 chr5 133657998 133658176 -18879083 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 4 1604 894 162 0 0 chr5 133658176 133658250 -18879009 + polypurine Low_complexity Low_complexity 93 166 0 4 1604 315 0 0 0 chr5 133658250 133658285 -18878974 + (CAG)n Simple_repeat Simple_repeat 2 36 0 4 1604 276 21 0 123 chr5 133658313 133658419 -18878840 + (CAAAAA)n Simple_repeat Simple_repeat 4 96 0 4 1604 234 120 148 74 chr5 133658550 133658604 -18878655 + B3A SINE B2 3 60 -138 4 1604 323 299 106 38 chr5 133658602 133658734 -18878525 - B4 SINE B4 -151 141 1 4 1604 851 274 46 46 chr5 133658813 133659115 -18878144 + ORR1E LTR MaLR 1 302 -57 4 1604 603 277 12 6 chr5 133659112 133659279 -18877980 + ID_B1 SINE B4 54 221 -3 4 1604 931 231 19 5 chr5 133659588 133659797 -18877462 - MTD LTR MaLR -206 213 2 4 1604 924 264 26 136 chr5 133660029 133660449 -18876810 - MTE2a LTR MaLR -5 374 1 4 1604 824 290 14 19 chr5 133660449 133660657 -18876602 - B4A SINE B4 -83 209 3 4 1604 25 0 0 0 chr5 133660874 133660899 -18876360 + AT_rich Low_complexity Low_complexity 1 25 0 4 1604 353 322 0 20 chr5 133661653 133661799 -18875460 - L1MC4a LINE L1 -1995 5887 5745 4 1604 1235 34 0 13 chr5 133662425 133662574 -18874685 - B1_Mus2 SINE Alu 0 147 1 4 1604 360 293 97 8 chr5 133662822 133662956 -18874303 + B1F SINE Alu 2 147 -2 4 1604 789 265 51 18 chr5 133662958 133663315 -18873944 + ZP3AR Satellite Satellite 1 368 0 4 1604 825 241 47 141 chr5 133663954 133664183 -18873076 + B4A SINE B4 4 230 -62 4 1604 679 245 53 21 chr5 133664183 133664371 -18872888 + B3A SINE B2 5 198 0 4 1604 825 241 47 141 chr5 133664371 133664460 -18872799 + B4A SINE B4 231 292 0 4 1604 839 285 27 0 chr5 133665100 133665320 -18871939 - B4 SINE B4 -29 263 38 4 1604 997 274 133 21 chr5 133665320 133665696 -18871563 + MTD LTR MaLR 2 419 0 4 1604 477 252 33 117 chr5 133667191 133667371 -18869888 + MTE2a LTR MaLR 78 242 -137 4 1604 534 191 0 35 chr5 133667348 133667462 -18869797 - B3A SINE B2 -85 110 1 4 1604 503 277 36 0 chr5 133667564 133667676 -18869583 - B1F1 SINE Alu -25 124 9 4 1604 299 253 69 0 chr5 133667685 133667772 -18869487 - L1M4b LINE L1 -5801 1533 1441 4 1604 646 310 7 0 chr5 133668083 133668225 -18869034 - RSINE1 SINE B4 -12 153 11 4 1604 28 29 0 0 chr5 133668251 133668286 -18868973 + AT_rich Low_complexity Low_complexity 1 35 0 4 1604 694 294 0 0 chr5 133668373 133668526 -18868733 - B3A SINE B2 -43 155 3 4 1604 500 271 21 52 chr5 133668753 133668944 -18868315 - L1M4b LINE L1 -5913 1421 1237 4 1604 750 211 21 0 chr5 133669118 133669260 -18867999 - RSINE1 SINE B4 -19 146 2 4 1604 856 323 20 73 chr5 133669290 133669647 -18867612 - ORR1E LTR MaLR 0 359 22 4 1604 989 131 32 144 chr5 133669663 133669913 -18867346 + URR1A DNA MER1_type 5 226 0 4 1604 24 32 0 0 chr5 133669999 133670030 -18867229 + AT_rich Low_complexity Low_complexity 1 31 0 4 1604 1117 243 13 75 chr5 133670323 133670630 -18866629 - MTE2a LTR MaLR -2 377 90 4 1604 318 115 0 0 chr5 133670725 133670786 -18866473 + (A)n Simple_repeat Simple_repeat 1 61 0 4 1604 1434 200 132 9 chr5 133672347 133672680 -18864579 - ORR1D1 LTR MaLR 0 374 1 4 1604 349 304 8 0 chr5 133674244 133674369 -18862890 - SRV_MM-int LTR ERVK -2566 3601 3476 4 1604 237 194 0 0 chr5 133676185 133676233 -18861026 - MTD LTR MaLR 0 421 372 4 1604 592 304 24 36 chr5 133676274 133676441 -18860818 - B3A SINE B2 -33 165 1 4 1604 189 0 0 0 chr5 133678002 133678023 -18859236 + (TG)n Simple_repeat Simple_repeat 1 21 0 4 1604 450 0 0 0 chr5 133678023 133678072 -18859187 + (GA)n Simple_repeat Simple_repeat 1 50 0 4 1604 233 220 20 0 chr5 133678243 133678293 -18858966 - MTE2a LTR MaLR 0 379 329 4 1604 441 286 9 18 chr5 133678433 133678547 -18858712 - MTE2a LTR MaLR -183 196 84 4 1604 322 331 33 0 chr5 133678724 133678847 -18858412 + B3A SINE B2 34 168 -48 4 1604 402 299 94 25 chr5 133678924 133679126 -18858133 - L1M5 LINE L1 -3180 2966 2751 4 1604 267 31 0 0 chr5 133679154 133679186 -18858073 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 4 1604 503 248 0 37 chr5 133679186 133679284 -18857975 - PB1D10 SINE Alu -12 105 10 4 1604 484 305 14 41 chr5 133679314 133679461 -18857798 - B1F1 SINE Alu -1 148 6 4 1604 204 281 0 0 chr5 133679590 133679647 -18857612 + (ATG)n Simple_repeat Simple_repeat 3 59 0 4 1604 621 235 7 22 chr5 133679881 133680016 -18857243 - ZP3AR Satellite Satellite -36 176 44 4 1604 804 310 83 25 chr5 133680417 133680731 -18856528 - RMER15 LTR ERVL 0 575 244 4 1604 299 333 0 61 chr5 133680990 133681089 -18856170 - B4 SINE B4 -160 132 40 4 1604 630 191 55 37 chr5 133681358 133681521 -18855738 - RMER15 LTR ERVL -19 556 391 4 1604 532 178 186 0 chr5 133681759 133681877 -18855382 + B1_Mur4 SINE Alu 2 141 -9 4 1604 1298 232 98 19 chr5 133681898 133682223 -18855036 - MTEa LTR MaLR -28 351 1 4 1604 336 257 19 9 chr5 133682472 133682578 -18854681 + (TTAGGG)n Simple_repeat Simple_repeat 4 110 0 4 1604 559 351 14 45 chr5 133682610 133682712 -18854547 + B4A SINE B4 1 99 -193 4 1604 2091 151 32 104 chr5 133682712 133683214 -18854045 + RMER4A LTR ERVK 1 466 0 4 1604 559 351 14 45 chr5 133683214 133683332 -18853927 + B4A SINE B4 100 214 -78 4 1604 341 91 30 0 chr5 133683337 133683403 -18853856 + (TCTCTG)n Simple_repeat Simple_repeat 3 70 0 4 1604 661 192 9 0 chr5 133683403 133683620 -18853639 + (CA)n Simple_repeat Simple_repeat 1 219 0 4 1604 1292 162 0 5 chr5 133685123 133685340 -18851919 - Lx4A LINE L1 -552 6506 6291 4 1604 3267 124 29 11 chr5 133685340 133685860 -18851399 + Lx4A LINE L1 6530 7058 0 4 1604 1111 266 29 33 chr5 133687261 133687533 -18849726 + MTEa LTR MaLR 39 309 -70 4 1604 243 0 0 0 chr5 133687608 133687635 -18849624 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 1604 405 0 0 0 chr5 133687635 133687679 -18849580 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1604 201 94 0 0 chr5 133687843 133687875 -18849384 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 4 1604 324 0 0 0 chr5 133687903 133687939 -18849320 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1604 200 35 35 0 chr5 133688202 133688231 -18849028 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4 1604 180 152 0 0 chr5 133688374 133688407 -18848852 + (TTA)n Simple_repeat Simple_repeat 3 35 0 4 1604 343 197 39 13 chr5 133688752 133688829 -18848430 - ID4_ SINE ID -3 80 2 4 1604 801 282 22 22 chr5 133688870 133689077 -18848182 - ZP3AR Satellite Satellite -14 207 1 4 1604 1103 75 7 0 chr5 133689249 133689260 -18847999 - B1_Mus1 SINE Alu 0 148 138 4 1604 293 43 43 0 chr5 133689260 133689306 -18847953 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 4 1604 1103 75 7 0 chr5 133689306 133689440 -18847819 - B1_Mus1 SINE Alu -11 137 3 4 1604 960 269 65 42 chr5 133690320 133690580 -18846679 - B4A SINE B4 -14 278 13 4 1604 364 244 0 118 chr5 133691545 133691647 -18845612 + Charlie12 DNA MER1_type 1 90 -2783 4 1604 290 214 33 87 chr5 133691653 133691745 -18845514 + B3A SINE B2 1 87 -111 4 1604 391 302 0 0 chr5 133691663 133691759 -18845500 + RSINE1 SINE B4 9 104 -61 4 1604 273 128 0 0 chr5 133691761 133691808 -18845451 + (CACG)n Simple_repeat Simple_repeat 1 47 0 4 1604 771 240 32 73 chr5 133691853 133692073 -18845186 + B4 SINE B4 82 292 0 4 1604 336 279 12 0 chr5 133692075 133692161 -18845098 + (CA)n Simple_repeat Simple_repeat 1 87 0 4 1604 344 182 26 0 chr5 133692161 133692238 -18845021 + (TATATG)n Simple_repeat Simple_repeat 5 83 0 4 1604 23 0 0 0 chr5 133692238 133692261 -18844998 + AT_rich Low_complexity Low_complexity 1 23 0 4 1604 355 92 15 15 chr5 133692887 133692953 -18844306 + (TGG)n Simple_repeat Simple_repeat 3 68 0 4 1604 561 113 53 18 chr5 133692950 133693121 -18844138 + (TG)n Simple_repeat Simple_repeat 1 177 0 4 1604 198 128 0 0 chr5 133693129 133693168 -18844091 + (TGG)n Simple_repeat Simple_repeat 3 41 0 4 1604 354 162 51 14 chr5 133693165 133693303 -18843956 + (TG)n Simple_repeat Simple_repeat 1 143 0 4 1604 210 193 0 0 chr5 133693300 133693357 -18843902 + (ATGGTG)n Simple_repeat Simple_repeat 1 57 0 4 200 509 233 263 0 chr5 133693360 133693493 -18843766 - B3A SINE B2 -30 168 1 4 1605 279 281 0 0 chr5 133693671 133693735 -18843524 - ID SINE ID -160 64 1 4 1605 432 0 0 0 chr5 133693752 133693800 -18843459 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1605 236 193 186 34 chr5 133693809 133693868 -18843391 - ID2 SINE ID -14 69 2 4 1605 364 289 36 15 chr5 133693897 133694034 -18843225 - B1F1 SINE Alu -9 140 1 4 1605 762 283 55 11 chr5 133694273 133694548 -18842711 - B4A SINE B4 -3 289 3 5 1605 221 57 29 0 chr5 133695304 133695339 -18841920 + (TATG)n Simple_repeat Simple_repeat 1 36 0 5 1605 426 39 0 0 chr5 133695339 133695390 -18841869 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1605 640 147 67 44 chr5 133695393 133695528 -18841731 - B2_Mm2 SINE B2 -57 138 1 5 1605 662 281 138 28 chr5 133695666 133695948 -18841311 + RCHARR1 DNA MER1_type 182 494 -480 5 1605 520 297 20 26 chr5 133695950 133696102 -18841157 + RSINE1 SINE B4 4 154 -11 5 1605 1573 258 42 13 chr5 133696128 133696576 -18840683 + RCHARR1 DNA MER1_type 497 957 -17 5 1605 464 307 35 0 chr5 133696641 133696755 -18840504 + RSINE1 SINE B4 8 125 -40 5 1605 279 0 0 0 chr5 133696788 133696819 -18840440 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1605 231 333 62 62 chr5 133697861 133698085 -18839174 - MIRb SINE MIR -39 229 6 5 1605 359 417 42 21 chr5 133698594 133698834 -18838425 - MLT1I LTR MaLR -76 335 91 5 1605 538 284 98 6 chr5 133698945 133699108 -18838151 + MIRb SINE MIR 43 220 -48 5 1605 1498 270 62 18 chr5 133699152 133699604 -18837655 + RMER5 LTR ERV1 52 523 -11 5 1605 445 306 33 0 chr5 133699764 133699885 -18837374 + B4A SINE B4 162 286 -6 5 1605 807 231 10 7 chr5 133699920 133700116 -18837143 + ORR1D1-int LTR MaLR 1187 1353 -17 5 1605 1631 211 22 0 chr5 133700132 133700445 -18836814 + ORR1D1 LTR MaLR 1 320 -54 5 1605 180 0 0 0 chr5 133700451 133700471 -18836788 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1605 750 23 0 0 chr5 133700784 133700872 -18836387 + (TC)n Simple_repeat Simple_repeat 1 88 0 5 1605 432 51 0 0 chr5 133700872 133700930 -18836329 + (CA)n Simple_repeat Simple_repeat 1 59 0 5 1605 231 173 0 0 chr5 133701753 133701805 -18835454 + (CA)n Simple_repeat Simple_repeat 1 52 0 5 1605 216 97 0 0 chr5 133701875 133701906 -18835353 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1605 492 167 0 0 chr5 133701906 133702002 -18835257 + (TA)n Simple_repeat Simple_repeat 1 96 0 5 1605 692 293 0 6 chr5 133702102 133702277 -18834982 - MTEa LTR MaLR 0 379 206 5 1605 605 209 0 25 chr5 133702285 133702403 -18834856 + B1_Mur4 SINE Alu 1 115 -35 5 1605 188 111 0 27 chr5 133702406 133702443 -18834816 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5 1605 495 300 38 23 chr5 133702513 133702646 -18834613 - RSINE1 SINE B4 -29 136 2 5 1605 660 301 5 30 chr5 133702646 133702837 -18834422 - MTEa LTR MaLR -193 186 1 5 1605 1275 53 58 12 chr5 133703339 133703512 -18833747 - B2_Mm2 SINE B2 -14 181 1 5 1605 279 0 0 0 chr5 133703542 133703573 -18833686 + (TG)n Simple_repeat Simple_repeat 1 31 0 5 1605 180 0 0 0 chr5 133703573 133703592 -18833667 + (CG)n Simple_repeat Simple_repeat 2 21 0 5 1605 684 293 12 18 chr5 133703601 133703771 -18833488 - B3A SINE B2 -27 171 3 5 1605 294 98 0 0 chr5 133704136 133704187 -18833072 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1605 507 45 0 0 chr5 133704187 133704252 -18833007 + (GA)n Simple_repeat Simple_repeat 2 67 0 5 1605 383 316 8 50 chr5 133704265 133704385 -18832874 + B4 SINE B4 42 156 -136 5 1605 287 25 0 24 chr5 133704870 133704911 -18832348 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1605 1109 288 14 22 chr5 133704913 133705272 -18831987 - Lx7 LINE L1 -388 7308 6953 5 1605 400 290 82 53 chr5 133705272 133705443 -18831816 + B3 SINE B2 7 182 -34 5 1605 26 50 0 0 chr5 133705747 133705787 -18831472 + AT_rich Low_complexity Low_complexity 1 40 0 5 1605 471 177 0 0 chr5 133706259 133706355 -18830904 + T-rich Low_complexity Low_complexity 1 96 0 5 1605 665 320 0 0 chr5 133706386 133706542 -18830717 + B3A SINE B2 5 160 -38 5 1605 351 65 0 0 chr5 133706572 133706618 -18830641 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1605 213 175 0 0 chr5 133707149 133707189 -18830070 + (TA)n Simple_repeat Simple_repeat 1 40 0 5 1605 22 0 0 0 chr5 133707209 133707231 -18830028 + AT_rich Low_complexity Low_complexity 1 22 0 5 1605 378 0 0 0 chr5 133707236 133707278 -18829981 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1605 522 0 0 0 chr5 133708548 133708606 -18828653 + (TC)n Simple_repeat Simple_repeat 1 58 0 5 1605 503 250 0 26 chr5 133709230 133709345 -18827914 - B1_Mus1 SINE Alu -26 122 11 5 1605 413 280 112 62 chr5 133709458 133709656 -18827603 + B4A SINE B4 45 265 -27 5 1605 360 0 0 0 chr5 133709711 133709751 -18827508 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1605 312 91 0 0 chr5 133709751 133709794 -18827465 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1605 267 93 0 0 chr5 133711178 133711221 -18826038 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 5 1605 658 246 30 8 chr5 133711225 133711356 -18825903 - RSINE1 SINE B4 -13 152 19 5 1605 1034 154 124 0 chr5 133711666 133711867 -18825392 + URR1A DNA MER1_type 1 226 0 5 1605 339 303 58 67 chr5 133711903 133712104 -18825155 + MTEb LTR MaLR 196 381 -38 5 1605 301 280 11 0 chr5 133713020 133713113 -18824146 - MER31-int LTR ERV1 -97 4839 4746 5 1605 678 114 0 31 chr5 133713536 133713663 -18823596 + (TCTCCC)n Simple_repeat Simple_repeat 3 125 0 5 1605 247 306 23 12 chr5 133713874 133713960 -18823299 + B4A SINE B4 88 174 -118 5 1605 492 170 57 57 chr5 133713886 133713992 -18823267 + PB1D9 SINE Alu 15 120 0 5 1605 570 29 0 0 chr5 133714117 133714185 -18823074 + (CCA)n Simple_repeat Simple_repeat 1 68 0 5 1605 326 335 20 13 chr5 133714446 133714597 -18822662 + LTR37B LTR ERV1 317 468 0 5 1605 235 123 30 30 chr5 133714872 133714939 -18822320 + (CAGAGA)n Simple_repeat Simple_repeat 2 68 0 5 1605 252 309 25 0 chr5 133714957 133715038 -18822221 + GA-rich Low_complexity Low_complexity 1 83 0 5 1605 1229 284 22 9 chr5 133715041 133715365 -18821894 - MTE2b LTR MaLR 0 379 52 5 1605 546 276 16 0 chr5 133715368 133715491 -18821768 - MTE2b LTR MaLR -254 125 1 5 1605 919 233 34 4 chr5 133716974 133717207 -18820052 - RMER15 LTR ERVL 0 575 336 5 1605 3665 60 4 4 chr5 133717257 133717728 -18819531 + L1_Mus1 LINE L1 6097 6567 0 5 1605 901 252 151 40 chr5 133717810 133718108 -18819151 - RMER15 LTR ERVL -244 331 1 5 1605 437 270 27 68 chr5 133718394 133718541 -18818718 + ID_B1 SINE B4 78 218 -6 5 1605 640 250 23 0 chr5 133718417 133718545 -18818714 + B1F2 SINE Alu 17 147 -2 5 1605 788 290 9 28 chr5 133718550 133718763 -18818496 + B4 SINE B4 16 224 -68 5 1605 342 98 0 0 chr5 133719176 133719227 -18818032 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1605 817 276 69 22 chr5 133719236 133719510 -18817749 - B4 SINE B4 -4 288 2 5 1605 461 17 0 17 chr5 133720638 133720697 -18816562 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1605 192 179 0 0 chr5 133721252 133721291 -18815968 + (CA)n Simple_repeat Simple_repeat 2 40 0 5 1605 349 317 10 66 chr5 133721317 133721513 -18815746 + L1MCb LINE L1 100 284 -5761 5 1605 843 286 67 91 chr5 133721526 133721941 -18815318 - MTE2a LTR MaLR 0 419 1 5 1605 351 0 0 0 chr5 133722378 133722417 -18814842 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1605 640 335 58 19 chr5 133722576 133722886 -18814373 - Lx8 LINE L1 -4 7469 7148 5 1605 473 253 25 29 chr5 133723188 133723332 -18813927 - MTE2a LTR MaLR 0 379 196 5 1605 663 293 70 44 chr5 133723525 133723796 -18813463 - B4A SINE B4 -14 278 1 5 1605 680 255 56 183 chr5 133724052 133724517 -18812742 + MTC LTR MaLR 1 406 -15 5 1605 447 256 287 127 chr5 133725454 133725691 -18811568 + B4 SINE B4 2 276 -16 5 1605 359 340 67 36 chr5 133725889 133726054 -18811205 + B3A SINE B2 11 180 -36 5 1605 447 19 0 0 chr5 133726057 133726109 -18811150 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1605 869 148 7 21 chr5 133726136 133726281 -18810978 + B1_Mur4 SINE Alu 5 147 -3 5 1605 447 52 0 0 chr5 133726384 133726442 -18810817 + (TG)n Simple_repeat Simple_repeat 2 59 0 5 1605 524 297 73 45 chr5 133726453 133726700 -18810559 - B4 SINE B4 -31 261 8 5 1605 1727 201 86 3 chr5 133726887 133727261 -18809998 - MTD LTR MaLR -14 405 1 5 1605 1764 235 58 33 chr5 133727352 133727871 -18809388 + RMER19C LTR ERVK 80 611 0 5 1605 285 214 20 10 chr5 133728173 133728272 -18808987 + CT-rich Low_complexity Low_complexity 2 101 0 5 1605 252 247 12 105 chr5 133728456 133728542 -18808717 + MER58C DNA MER1_type 138 215 0 5 1605 3344 42 0 15 chr5 133729679 133730086 -18807173 - L1Md_F3 LINE L1 -14 6570 6170 5 1605 579 285 78 96 chr5 133730189 133730534 -18806725 + MTE2a LTR MaLR 31 369 -10 5 1605 921 279 17 47 chr5 133730628 133730929 -18806330 - B4A SINE B4 0 292 1 5 1605 227 125 60 40 chr5 133731133 133731183 -18806076 + (TATATG)n Simple_repeat Simple_repeat 1 51 0 5 1605 246 222 0 53 chr5 133732269 133732326 -18804933 + B4 SINE B4 33 86 -206 5 1605 39043 11 1 7 chr5 133732333 133738088 -18799171 + L1Md_A LINE L1 1 5586 -297 5 1605 9005 13 0 0 chr5 133738088 133739084 -18798175 + L1Md_A LINE L1 5587 6582 0 5 1605 538 261 85 30 chr5 133739084 133739285 -18797974 + B4 SINE B4 81 292 0 5 1605 257 244 12 0 chr5 133739307 133739393 -18797866 + (TA)n Simple_repeat Simple_repeat 1 87 0 5 1605 640 278 79 40 chr5 133739533 133739810 -18797449 - B4 SINE B4 0 292 5 5 1605 386 295 25 25 chr5 133739832 133739992 -18797267 - MTD LTR MaLR -259 160 1 5 1605 237 108 0 0 chr5 133740520 133740557 -18796702 + (TG)n Simple_repeat Simple_repeat 1 37 0 5 1605 767 239 160 25 chr5 133740581 133740825 -18796434 - B4A SINE B4 -14 278 2 5 1605 250 360 45 11 chr5 133741118 133741295 -18795964 + ERVL-B4-int LTR ERVL 2508 2690 -3024 5 1605 252 143 0 0 chr5 133741572 133741614 -18795645 + (TATG)n Simple_repeat Simple_repeat 3 44 0 5 1605 307 246 0 0 chr5 133741666 133741727 -18795532 - ID SINE ID -163 61 1 5 1605 602 283 56 0 chr5 133741855 133742035 -18795224 - B4A SINE B4 0 292 103 6 1605 606 113 0 0 chr5 133742070 133742176 -18795083 + (TC)n Simple_repeat Simple_repeat 1 106 0 6 1605 765 51 0 0 chr5 133742176 133742274 -18794985 + (TG)n Simple_repeat Simple_repeat 1 98 0 6 1605 767 239 7 0 chr5 133742281 133742436 -18794823 - B3A SINE B2 -38 160 5 6 1605 266 333 0 11 chr5 133742451 133742539 -18794720 - B4A SINE B4 -205 87 1 6 1605 224 310 73 80 chr5 133742546 133742683 -18794576 - B4A SINE B4 -72 220 85 6 1605 384 348 58 11 chr5 133742855 133743044 -18794215 - B3A SINE B2 0 198 1 6 1605 192 111 0 0 chr5 133743083 133743119 -18794140 + (TTGG)n Simple_repeat Simple_repeat 2 37 0 6 1605 360 0 0 0 chr5 133743602 133743642 -18793617 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1605 387 0 0 0 chr5 133743642 133743684 -18793575 + (GA)n Simple_repeat Simple_repeat 2 44 0 6 1605 237 224 0 0 chr5 133744266 133744324 -18792935 + (CATA)n Simple_repeat Simple_repeat 2 59 0 6 1605 1170 254 42 21 chr5 133744341 133744627 -18792632 - B4A SINE B4 0 292 1 6 1605 364 281 14 136 chr5 133744954 133745170 -18792089 + MTE2a LTR MaLR 1 188 -191 6 1605 695 95 9 0 chr5 133745178 133745283 -18791976 + (GGGA)n Simple_repeat Simple_repeat 3 108 0 6 1605 544 266 62 43 chr5 133745291 133745334 -18791925 + MTE2a LTR MaLR 167 211 -168 6 1605 558 0 0 0 chr5 133745334 133745396 -18791863 + (TC)n Simple_repeat Simple_repeat 1 62 0 6 1605 544 266 62 43 chr5 133745396 133745560 -18791699 + MTE2a LTR MaLR 212 378 -1 6 1605 294 211 14 0 chr5 133746039 133746110 -18791149 - MLT1A1 LTR MaLR -36 372 301 6 1605 1568 197 89 14 chr5 133746321 133746738 -18790521 - RMER15 LTR ERVL -21 554 107 6 1605 268 161 32 16 chr5 133746893 133746956 -18790303 - RMER15 LTR ERVL -485 90 27 6 1605 995 126 126 5 chr5 133746960 133747151 -18790108 - URR1A DNA MER1_type -12 214 1 6 1605 280 246 0 15 chr5 133747305 133747371 -18789888 - MLT1A1 LTR MaLR -309 99 35 6 1605 499 333 40 66 chr5 133747550 133747823 -18789436 - B4A SINE B4 -18 274 9 6 1605 956 245 45 49 chr5 133747869 133747947 -18789312 + B4 SINE B4 2 79 -213 6 1605 459 0 0 0 chr5 133747947 133747998 -18789261 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 6 1605 956 245 45 49 chr5 133747998 133748206 -18789053 + B4 SINE B4 80 286 -6 6 1605 971 257 27 57 chr5 133748720 133749017 -18788242 - B4 SINE B4 0 292 5 6 1605 612 314 60 82 chr5 133749670 133750035 -18787224 + MTEa LTR MaLR 3 359 -20 6 1605 457 333 48 0 chr5 133750091 133750238 -18787021 - RSINE1 SINE B4 -9 156 3 6 1605 686 241 75 0 chr5 133750269 133750443 -18786816 + B3A SINE B2 8 194 -4 6 1605 539 85 12 0 chr5 133751060 133751142 -18786117 + (CA)n Simple_repeat Simple_repeat 1 83 0 6 1605 757 251 0 30 chr5 133751194 133751362 -18785897 + RSINE1 SINE B4 3 165 0 6 1605 2267 83 0 0 chr5 133751553 133751855 -18785404 - L1_Mm LINE L1 -2853 3030 2729 6 1605 6854 57 0 9 chr5 133751855 133752725 -18784534 + L1Md_F2 LINE L1 5720 6581 -1 6 1605 326 61 20 0 chr5 133752942 133752991 -18784268 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1605 296 307 70 104 chr5 133752996 133753283 -18783976 - B4A SINE B4 -11 281 5 6 1605 274 288 9 26 chr5 133753720 133753834 -18783425 + (TATATG)n Simple_repeat Simple_repeat 6 117 0 6 1605 339 310 209 54 chr5 133753841 133754080 -18783179 - B4A SINE B4 -12 280 5 6 1605 287 309 45 18 chr5 133754171 133754196 -18783063 - B4A SINE B4 -176 116 2 6 1605 297 279 23 11 chr5 133754196 133754283 -18782976 - B3 SINE B2 -127 89 2 6 1605 571 255 6 6 chr5 133754597 133754755 -18782504 + L1MA4 LINE L1 6095 6252 -48 6 1605 1761 135 5 139 chr5 133754767 133755147 -18782112 - ORR1A4 LTR MaLR 0 329 1 6 1605 262 250 52 13 chr5 133755147 133755224 -18782035 + B4 SINE B4 3 82 -210 6 1605 477 0 0 0 chr5 133755420 133755473 -18781786 + (GA)n Simple_repeat Simple_repeat 2 54 0 6 1605 472 312 33 60 chr5 133755532 133755716 -18781543 + B3A SINE B2 3 181 -17 6 1605 1352 247 10 58 chr5 133755842 133756238 -18781021 - MTE2a LTR MaLR 0 379 3 6 1605 663 285 56 16 chr5 133756435 133756685 -18780574 - L1MA4 LINE L1 -368 5932 5673 6 1605 781 253 0 81 chr5 133756771 133756969 -18780290 - B3A SINE B2 -16 182 1 6 1605 440 267 25 8 chr5 133757005 133757126 -18780133 - L1MA4 LINE L1 -654 5658 5536 6 1605 256 256 23 11 chr5 133757843 133757930 -18779329 + (TG)n Simple_repeat Simple_repeat 2 89 0 6 1605 400 368 70 6 chr5 133757975 133758147 -18779112 - B4A SINE B4 -75 217 35 6 1605 546 16 0 0 chr5 133758184 133758247 -18779012 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1605 583 330 42 18 chr5 133758534 133758818 -18778441 - B4 SINE B4 0 292 2 6 1605 1299 294 10 39 chr5 133759128 133759539 -18777720 + Lx8 LINE L1 6229 6627 -846 6 1605 297 51 0 0 chr5 133759608 133759647 -18777612 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1605 449 338 56 48 chr5 133759660 133759809 -18777450 - B4A SINE B4 0 292 141 6 1605 2232 161 31 8 chr5 133759809 133760192 -18777067 + ORR1B1 LTR MaLR 3 394 0 6 1605 449 338 56 48 chr5 133760192 133760294 -18776965 - B4A SINE B4 -152 140 39 6 1605 216 236 36 0 chr5 133760255 133760310 -18776949 - B3A SINE B2 -121 77 21 6 1605 25 0 0 0 chr5 133760708 133760733 -18776526 + AT_rich Low_complexity Low_complexity 1 25 0 6 1605 433 239 71 35 chr5 133760900 133761013 -18776246 + B3A SINE B2 4 120 -78 6 1605 492 0 44 0 chr5 133761040 133761108 -18776151 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 6 1605 254 270 79 26 chr5 133761140 133761216 -18776043 - PB1D10 SINE Alu -34 83 4 6 1605 359 89 18 0 chr5 133761294 133761350 -18775909 + (CATA)n Simple_repeat Simple_repeat 4 60 0 6 1605 432 280 29 43 chr5 133761352 133761490 -18775769 - MT2A LTR ERVL -71 462 327 6 1605 471 235 90 84 chr5 133761747 133761914 -18775345 + MTEa LTR MaLR 3 170 -209 6 1605 328 300 118 26 chr5 133762080 133762123 -18775136 - RMER20B LTR ERVK -235 392 340 6 1605 3543 30 0 0 chr5 133762123 133762519 -18774740 - MTA_Mm LTR MaLR 0 396 1 6 1605 328 300 118 26 chr5 133762519 133762670 -18774589 - RMER20B LTR ERVK -288 339 180 6 1605 571 260 0 46 chr5 133762811 133762970 -18774289 + B3A SINE B2 2 151 -47 6 1605 306 0 0 0 chr5 133762970 133763004 -18774255 + (CA)n Simple_repeat Simple_repeat 2 35 0 6 1605 233 285 28 147 chr5 133763004 133763062 -18774197 + B2_Mm1a SINE B2 144 192 -1 6 1605 1024 338 28 31 chr5 133763776 133764234 -18773025 - MT2A LTR ERVL -71 462 6 6 1605 254 87 22 0 chr5 133764503 133764549 -18772710 + (CCAA)n Simple_repeat Simple_repeat 1 47 0 6 1605 711 301 5 69 chr5 133764552 133764770 -18772489 + B4A SINE B4 89 292 0 6 1605 728 278 20 25 chr5 133764916 133765115 -18772144 + B3A SINE B2 1 198 0 6 1605 2418 262 103 33 chr5 133765572 133766444 -18770815 - Lx9 LINE L1 -15 7629 6697 6 1605 2948 64 22 5 chr5 133766445 133766855 -18770404 + MT2C_Mm LTR ERVL 59 475 0 6 1605 345 291 287 5 chr5 133766855 133767054 -18770205 - Lx9 LINE L1 -979 6665 6411 6 1605 514 308 6 54 chr5 133767191 133767359 -18769900 - B3A SINE B2 0 198 39 6 1605 784 131 0 14 chr5 133767452 133767592 -18769667 + (GAA)n Simple_repeat Simple_repeat 2 139 0 6 1605 548 157 0 18 chr5 133767585 133767695 -18769564 + GA-rich Low_complexity Low_complexity 3 110 0 6 1605 1213 190 15 33 chr5 133767700 133767972 -18769287 - RMER10B LTR ERVL -131 267 1 6 1605 801 171 20 0 chr5 133767976 133768128 -18769131 + RLTR15 LTR ERVK 164 318 -41 6 1605 3139 94 38 51 chr5 133768128 133768654 -18768605 + MURVY-LTR LTR ERV1 1 519 0 6 1605 4858 279 65 46 chr5 133768654 133771266 -18765993 + MuRRS4-int LTR ERV1 3 2816 -4740 6 1605 3044 276 0 4 chr5 133771269 133772006 -18765253 + MuRRS4-int LTR ERV1 2152 2885 -2178 6 1605 2084 128 8 150 chr5 133772034 133772566 -18764693 + MURVY-LTR LTR ERV1 1 456 -63 6 1605 498 230 62 53 chr5 133772711 133772955 -18764304 + LTRIS4 LTR ERV1 276 507 0 6 1605 466 61 15 0 chr5 133772955 133773021 -18764238 + MURVY-LTR LTR ERV1 453 519 0 6 1605 281 49 73 0 chr5 133773022 133773063 -18764196 + RLTR15 LTR ERVK 316 359 0 6 1605 812 271 80 23 chr5 133773069 133773333 -18763926 - B4 SINE B4 -12 280 2 6 1605 727 261 135 42 chr5 133773848 133774136 -18763123 - RMER15 LTR ERVL 0 575 261 6 1605 223 255 0 0 chr5 133774151 133774202 -18763057 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 1605 423 0 0 0 chr5 133774567 133774614 -18762645 + (TG)n Simple_repeat Simple_repeat 1 47 0 6 1605 221 158 0 0 chr5 133774622 133774660 -18762599 - RSINE1 SINE B4 -43 122 85 6 1605 512 330 16 67 chr5 133774644 133774897 -18762362 - B4A SINE B4 -52 240 1 6 1605 265 184 59 6 chr5 133775143 133775312 -18761947 + (TA)n Simple_repeat Simple_repeat 1 178 0 6 1605 406 189 52 23 chr5 133775312 133775485 -18761774 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 6 1605 724 259 118 26 chr5 133775739 133776093 -18761166 + RMER15 LTR ERVL 61 533 -42 6 1605 361 336 23 8 chr5 133776344 133776473 -18760786 + B1F SINE Alu 10 140 -9 6 1605 599 262 49 0 chr5 133776479 133776690 -18760569 + ZP3AR Satellite Satellite 1 221 0 6 1605 300 120 0 0 chr5 133776764 133776814 -18760445 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 6 1605 202 258 29 43 chr5 133776816 133776885 -18760374 + GA-rich Low_complexity Low_complexity 3 70 0 6 1605 604 320 0 6 chr5 133777004 133777180 -18760079 - MLT1D LTR MaLR -330 175 1 6 1605 839 238 34 18 chr5 133777712 133778158 -18759101 + ZP3AR Satellite Satellite 1 453 -1 6 1605 221 306 0 0 chr5 133778115 133778164 -18759095 + ID4 SINE ID 1 49 -34 6 1605 244 266 180 71 chr5 133778172 133778546 -18758713 + L1MC3 LINE L1 6798 7234 -761 6 1605 242 281 0 17 chr5 133778612 133778670 -18758589 + B4A SINE B4 6 62 -230 6 1605 1125 82 0 0 chr5 133778672 133778818 -18758441 + B1_Mus2 SINE Alu 2 147 0 6 1605 343 324 27 53 chr5 133778832 133778982 -18758277 + B4A SINE B4 50 195 -97 6 1605 237 250 0 18 chr5 133778982 133779039 -18758220 + MTEb LTR MaLR 170 225 -154 6 1605 922 271 110 44 chr5 133779127 133779396 -18757863 - MTD LTR MaLR -15 404 112 6 1605 1234 131 22 26 chr5 133779396 133779623 -18757636 + URR1A DNA MER1_type 1 226 0 6 1605 922 271 110 44 chr5 133779623 133779716 -18757543 - MTD LTR MaLR -308 111 18 6 1605 356 221 0 13 chr5 133779736 133779814 -18757445 + MTEb LTR MaLR 299 375 -4 6 1605 375 302 21 7 chr5 133780393 133780533 -18756726 - MLT1B LTR MaLR -42 348 207 7 1605 237 268 24 150 chr5 133780614 133780781 -18756478 + RMER15 LTR ERVL 1 146 -429 7 1605 298 307 56 65 chr5 133780822 133780930 -18756329 + RMER15 LTR ERVL 347 453 -122 7 1605 21 0 0 0 chr5 133781063 133781084 -18756175 + AT_rich Low_complexity Low_complexity 1 21 0 7 1605 1057 258 129 0 chr5 133781421 133781723 -18755536 + MTEa LTR MaLR 38 378 -1 7 1605 351 257 36 9 chr5 133783024 133783134 -18754125 + PB1D9 SINE Alu 1 113 -7 7 1605 226 261 0 0 chr5 133783145 133783191 -18754068 + ID SINE ID 3 48 -176 7 1605 282 228 17 26 chr5 133783195 133783312 -18753947 + (TTATA)n Simple_repeat Simple_repeat 5 120 0 7 1605 447 19 0 0 chr5 133783963 133784015 -18753244 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1605 456 311 14 0 chr5 133784150 133784298 -18752961 - B3A SINE B2 -47 151 2 7 1605 185 319 58 41 chr5 133784354 133784475 -18752784 + MIR SINE MIR 18 140 -68 7 1605 225 94 0 0 chr5 133784476 133784508 -18752751 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7 1605 1007 250 176 55 chr5 133784646 133785158 -18752101 + RMER15 LTR ERVL 2 575 0 7 1605 555 272 136 0 chr5 133785264 133785455 -18751804 + ID_B1 SINE B4 3 219 -5 7 1605 234 197 32 26 chr5 133785493 133785649 -18751610 + GA-rich Low_complexity Low_complexity 1 157 0 7 1605 311 186 155 26 chr5 133785683 133785799 -18751460 + RLTR15 LTR ERVK 1 131 -228 7 1605 1102 84 0 0 chr5 133785816 133785958 -18751301 + B1_Mus2 SINE Alu 1 142 -5 7 1605 881 9 28 0 chr5 133785959 133786067 -18751192 + (GGGAGA)n Simple_repeat Simple_repeat 2 112 0 7 1605 283 281 49 89 chr5 133786069 133786315 -18750944 + RLTR15 LTR ERVK 116 351 -8 7 1605 189 107 0 0 chr5 133786508 133786536 -18750723 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1605 1044 239 26 66 chr5 133786548 133786852 -18750407 - B4 SINE B4 0 292 1 7 1605 489 342 35 35 chr5 133787518 133787800 -18749459 + B4 SINE B4 3 284 -8 7 1605 288 0 0 0 chr5 133787823 133787855 -18749404 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1605 278 308 13 52 chr5 133788113 133788267 -18748992 + B1F1 SINE Alu 1 148 -1 7 1605 594 264 74 7 chr5 133788281 133788430 -18748829 + B3A SINE B2 2 160 -38 7 1605 342 0 0 0 chr5 133788440 133788478 -18748781 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1605 348 333 25 17 chr5 133788596 133788715 -18748544 - B1F1 SINE Alu -29 120 1 7 1605 1372 249 17 36 chr5 133788801 133789163 -18748096 + MTEa LTR MaLR 25 379 0 7 1605 407 43 0 54 chr5 133789263 133789337 -18747922 + (TA)n Simple_repeat Simple_repeat 2 71 0 7 1605 180 111 0 0 chr5 133789610 133789637 -18747622 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7 1605 270 95 0 0 chr5 133790766 133790808 -18746451 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1605 1587 259 47 63 chr5 133790816 133791353 -18745906 - RMER15 LTR ERVL -18 557 30 7 1605 258 184 26 13 chr5 133791465 133791542 -18745717 + (TG)n Simple_repeat Simple_repeat 2 79 0 7 1605 498 275 102 31 chr5 133791550 133791783 -18745476 - MLT2B2 LTR ERVL -80 482 132 7 1605 268 274 0 0 chr5 133791899 133791972 -18745287 - B3A SINE B2 -122 76 4 7 1605 284 312 78 31 chr5 133792047 133792176 -18745083 + ORR1E LTR MaLR 3 137 -222 7 1605 641 239 0 13 chr5 133792858 133793014 -18744245 + B3 SINE B2 7 162 -36 7 1605 459 0 0 0 chr5 133793015 133793066 -18744193 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1605 515 280 44 13 chr5 133793139 133793298 -18743961 + ID_B1 SINE B4 1 164 -60 7 1605 258 136 0 0 chr5 133793513 133793557 -18743702 + (TCTCCC)n Simple_repeat Simple_repeat 6 49 0 7 1605 442 201 165 61 chr5 133793651 133793815 -18743444 - ORR1D2 LTR MaLR 0 370 190 7 1605 2072 167 174 13 chr5 133793821 133793855 -18743404 + RMER19A LTR ERVK 1 35 -702 7 1605 3344 85 14 33 chr5 133793855 133794339 -18742920 + MT2C_Mm LTR ERVL 1 475 0 7 1605 2072 138 124 8 chr5 133794339 133794915 -18742344 + RMER19A LTR ERVK 36 736 -1 7 1605 279 230 276 0 chr5 133794919 133795006 -18742253 - ORR1D2 LTR MaLR -244 126 16 7 1605 275 198 266 18 chr5 133795031 133795144 -18742115 + Lx8 LINE L1 7167 7307 -166 7 1605 990 269 77 4 chr5 133795280 133795552 -18741707 + B4 SINE B4 1 292 0 7 1605 293 238 0 10 chr5 133795579 133795681 -18741578 + CT-rich Low_complexity Low_complexity 2 102 0 7 1605 186 71 0 0 chr5 133795702 133795730 -18741529 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1605 547 271 13 38 chr5 133795759 133795916 -18741343 + B3A SINE B2 46 198 0 7 1605 254 274 62 89 chr5 133796512 133796624 -18740635 + PB1D10 SINE Alu 1 109 -8 7 1605 1467 86 1 0 chr5 133796637 133797079 -18740180 + ZP3AR Satellite Satellite 1 442 -3 7 1605 249 266 47 0 chr5 133797171 133797235 -18740024 - PB1D10 SINE Alu -20 97 31 7 1605 39376 7 0 1 chr5 133797681 133803666 -18733593 + L1Md_A LINE L1 1 5586 -297 7 1605 9165 4 0 0 chr5 133803666 133804662 -18732597 + L1Md_A LINE L1 5587 6582 0 7 1605 532 202 113 0 chr5 133804676 133804800 -18732459 + RSINE1 SINE B4 3 140 -25 7 1605 475 298 32 8 chr5 133804953 133805078 -18732181 + RSINE1 SINE B4 7 134 -31 7 1605 732 52 0 0 chr5 133805099 133805196 -18732063 + (CA)n Simple_repeat Simple_repeat 1 97 0 7 1605 21 36 0 0 chr5 133805214 133805242 -18732017 + AT_rich Low_complexity Low_complexity 1 28 0 7 1605 2219 154 23 10 chr5 133805725 133806113 -18731146 + MTC LTR MaLR 1 393 -28 7 1605 759 216 92 50 chr5 133806196 133806537 -18730722 - RMER19B LTR ERVK -359 543 1 7 1605 676 296 36 23 chr5 133806537 133806741 -18730518 - B4 SINE B4 -84 208 2 7 1605 385 206 42 32 chr5 133806782 133806877 -18730382 - ID_B1 SINE B4 -25 199 104 7 1605 337 250 0 0 chr5 133806809 133806885 -18730374 - PB1D7 SINE Alu -30 90 15 7 1605 440 272 0 10 chr5 133806901 133807005 -18730254 - PB1 SINE Alu -10 117 15 7 1605 617 235 44 0 chr5 133807485 133807621 -18729638 - ID_B1 SINE B4 0 224 83 7 1605 299 216 27 0 chr5 133807622 133807696 -18729563 + Tigger7 DNA MER2_type 2343 2418 -73 7 1605 580 236 42 0 chr5 133807779 133807923 -18729336 + B3A SINE B2 1 150 -48 7 1605 429 20 0 0 chr5 133808029 133808079 -18729180 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1605 624 234 28 111 chr5 133808106 133808322 -18728937 - B3A SINE B2 0 198 1 7 1605 664 247 176 25 chr5 133808639 133808884 -18728375 + B4A SINE B4 9 290 -2 7 1605 450 0 0 0 chr5 133808915 133808965 -18728294 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1605 243 0 0 0 chr5 133808965 133808991 -18728268 + (GA)n Simple_repeat Simple_repeat 2 28 0 7 1605 291 215 0 0 chr5 133809079 133809144 -18728115 + T-rich Low_complexity Low_complexity 4 68 0 7 1605 267 320 0 0 chr5 133809205 133809280 -18727979 + MIRc SINE MIR 74 148 -120 7 1605 1221 99 44 6 chr5 133809307 133809490 -18727769 - B2_Mm2 SINE B2 -4 191 2 7 1605 319 365 0 33 chr5 133809785 133809938 -18727321 + (CACCAT)n Simple_repeat Simple_repeat 3 150 0 7 1605 4441 143 30 36 chr5 133809938 133810680 -18726579 - RMER19A LTR ERVK 0 737 1 7 1605 380 386 0 0 chr5 133810680 133810835 -18726424 + (CAT)n Simple_repeat Simple_repeat 1 155 0 7 1605 415 285 0 37 chr5 133810858 133811022 -18726237 + HAL1-2a_MD LINE L1 2349 2506 -518 7 1605 621 326 71 0 chr5 133811548 133811744 -18725515 - B4A SINE B4 -74 218 9 7 1605 491 293 106 5 chr5 133811787 133811986 -18725273 - ID_B1 SINE B4 -5 219 1 7 1605 886 303 27 64 chr5 133812417 133812628 -18724631 + B4 SINE B4 8 220 -72 7 1605 740 244 146 5 chr5 133812628 133812813 -18724446 + B3 SINE B2 2 212 -4 7 1605 886 303 27 64 chr5 133812813 133812897 -18724362 + B4 SINE B4 221 292 0 7 1605 234 193 0 0 chr5 133812907 133812964 -18724295 + (CA)n Simple_repeat Simple_repeat 1 57 0 7 1605 321 26 0 0 chr5 133812964 133813002 -18724257 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1605 252 235 67 58 chr5 133813167 133813271 -18723988 - MTEb LTR MaLR 0 379 275 7 1605 473 303 82 87 chr5 133813494 133813700 -18723559 - B3A SINE B2 -6 210 6 7 1605 376 206 15 0 chr5 133814218 133814349 -18722910 + (TCTA)n Simple_repeat Simple_repeat 2 134 0 7 1605 334 68 0 0 chr5 133814563 133814607 -18722652 + HAL1-3A_ME LINE L1 1969 2012 -846 7 1605 210 308 0 0 chr5 133814607 133814659 -18722600 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1605 303 330 26 9 chr5 133814789 133814902 -18722357 + B1F SINE Alu 10 124 -25 7 1605 207 139 0 0 chr5 133814919 133814955 -18722304 + (GGA)n Simple_repeat Simple_repeat 2 37 0 7 1605 201 178 0 0 chr5 133814992 133815037 -18722222 + GA-rich Low_complexity Low_complexity 3 47 0 7 1605 768 236 23 104 chr5 133815573 133815833 -18721426 + MTEa LTR MaLR 2 240 -139 7 1605 588 287 83 77 chr5 133816002 133816315 -18720944 + L1MA4 LINE L1 5571 5885 -415 7 1605 1058 146 171 5 chr5 133816810 133817003 -18720256 - URR1B DNA MER1_type 0 225 1 7 1605 283 305 113 9 chr5 133817341 133817447 -18719812 + PB1D10 SINE Alu 1 117 0 7 1605 434 269 162 8 chr5 133818593 133818757 -18718502 + MTEa LTR MaLR 65 254 -125 7 1605 1038 301 22 25 chr5 133819006 133819320 -18717939 + MTEb LTR MaLR 1 313 -66 7 1605 180 0 0 0 chr5 133819443 133819463 -18717796 + (TG)n Simple_repeat Simple_repeat 1 20 0 7 1605 420 20 0 0 chr5 133819463 133819512 -18717747 + (TA)n Simple_repeat Simple_repeat 1 49 0 7 1605 264 229 23 46 chr5 133819902 133819989 -18717270 + Lx8 LINE L1 7389 7473 0 7 1605 477 244 17 0 chr5 133820064 133820179 -18717080 - MER44D DNA MER2_type -588 117 1 7 1605 283 290 54 0 chr5 133820836 133820929 -18716330 - MTEa LTR MaLR -281 98 1 7 1605 1437 224 96 21 chr5 133821751 133822138 -18715121 - MTC LTR MaLR -3 418 3 8 1605 1084 281 47 42 chr5 133822194 133822595 -18714664 + MTD LTR MaLR 1 403 -16 8 1605 231 42 61 20 chr5 133822661 133822710 -18714549 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 8 1605 248 224 15 15 chr5 133822907 133822975 -18714284 + RMER30 DNA MER1_type 135 202 0 8 1605 717 127 176 42 chr5 133823864 133824029 -18713230 - URR1A DNA MER1_type -35 191 5 8 1605 423 0 0 0 chr5 133824062 133824109 -18713150 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1605 692 312 12 17 chr5 133824120 133824361 -18712898 - MT2A LTR ERVL -71 462 223 8 1606 779 173 7 14 chr5 133824900 133825041 -18712218 + B1_Mur3 SINE Alu 10 149 0 8 1606 532 183 22 28 chr5 133825052 133825232 -18712027 + GA-rich Low_complexity Low_complexity 2 180 0 8 1606 242 118 0 0 chr5 133825240 133825274 -18711985 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 8 1606 864 172 4 20 chr5 133825274 133825530 -18711729 + GA-rich Low_complexity Low_complexity 1 251 0 8 1606 228 184 0 0 chr5 133825966 133826004 -18711255 + RSINE1 SINE B4 84 121 -44 8 1606 1770 255 126 13 chr5 133826571 133827111 -18710148 + Lx8 LINE L1 6871 7471 -2 8 1606 970 254 102 50 chr5 133827139 133827500 -18709759 - MTD LTR MaLR -30 389 10 8 1606 281 336 89 71 chr5 133827506 133827762 -18709497 - MLT1D LTR MaLR -10 495 198 8 1606 315 0 0 0 chr5 133827841 133827876 -18709383 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1606 1109 217 24 130 chr5 133827978 133828402 -18708857 - MTE2a LTR MaLR 0 379 1 8 1606 418 341 0 0 chr5 133828404 133828530 -18708729 - Lx8 LINE L1 -148 7325 7200 8 1606 324 48 0 0 chr5 133829398 133829440 -18707819 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1606 232 338 0 38 chr5 133829474 133829554 -18707705 - B4A SINE B4 -4 288 212 8 1606 26034 82 14 3 chr5 133829565 133834845 -18702414 + L1Md_F2 LINE L1 244 5585 -298 8 1606 8098 60 20 3 chr5 133834846 133835813 -18701446 + L1Md_F2 LINE L1 5587 6569 -13 8 1606 470 301 84 28 chr5 133835818 133835996 -18701263 - B3A SINE B2 -10 188 1 8 1606 551 340 64 16 chr5 133835999 133836187 -18701072 - B4A SINE B4 -61 231 35 8 1606 765 338 32 5 chr5 133836234 133836451 -18700808 + B4A SINE B4 1 223 -69 8 1606 243 0 0 0 chr5 133836481 133836508 -18700751 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1606 1078 247 26 76 chr5 133837238 133837580 -18699679 + ORR1E LTR MaLR 4 328 -31 8 1606 1207 255 26 128 chr5 133837895 133838317 -18698942 - MTE2a LTR MaLR 0 379 1 8 1606 468 347 20 15 chr5 133838718 133838917 -18698342 - Lx8 LINE L1 -246 7227 7028 8 1606 281 309 0 0 chr5 133838952 133839007 -18698252 + ID SINE ID 23 77 -147 8 1606 7562 80 11 4 chr5 133839193 133840698 -18696561 - L1_Mus1 LINE L1 -3 6564 5049 8 1606 1282 218 125 41 chr5 133840998 133841342 -18695917 + MTE2b LTR MaLR 7 379 0 8 1606 487 343 27 54 chr5 133842807 133843029 -18694230 + MTEa LTR MaLR 1 216 -163 8 1606 336 304 23 29 chr5 133843029 133843202 -18694057 + CT-rich Low_complexity Low_complexity 2 173 0 8 1606 302 265 115 19 chr5 133843202 133843306 -18693953 + MTEa LTR MaLR 197 310 -69 8 1606 595 57 23 0 chr5 133843306 133843394 -18693865 + (CTA)n Simple_repeat Simple_repeat 2 91 0 8 1606 515 227 111 44 chr5 133843959 133844207 -18693052 - MTEb LTR MaLR 0 379 97 8 1606 509 273 31 0 chr5 133844223 133844351 -18692908 + MTD LTR MaLR 15 146 -273 8 1606 262 329 11 66 chr5 133844346 133844437 -18692822 - MTEb LTR MaLR -273 86 1 8 1606 282 192 25 13 chr5 133845265 133845344 -18691915 + (TTG)n Simple_repeat Simple_repeat 2 81 0 8 1606 615 263 122 0 chr5 133845344 133845500 -18691759 - ID_B1 SINE B4 -14 210 36 8 1606 238 203 12 86 chr5 133845559 133845624 -18691635 + L1MA4A LINE L1 6158 6218 -85 8 1606 1202 250 62 43 chr5 133845624 133845823 -18691436 - MTE2b LTR MaLR 0 379 179 8 1606 234 91 0 0 chr5 133845823 133845856 -18691403 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 8 1606 1202 250 62 43 chr5 133845856 133846028 -18691231 - MTE2b LTR MaLR -201 178 1 8 1606 238 203 12 86 chr5 133846028 133846043 -18691216 + L1MA4A LINE L1 6219 6231 -72 8 1606 469 136 12 12 chr5 133846194 133846276 -18690983 - MTE2a LTR MaLR -2 377 296 8 1606 231 227 0 0 chr5 133846401 133846498 -18690761 + (TA)n Simple_repeat Simple_repeat 1 97 0 8 1606 839 256 25 136 chr5 133846509 133846825 -18690434 - MTE2a LTR MaLR -86 293 13 8 1606 221 258 48 0 chr5 133847857 133847919 -18689340 - MIRc SINE MIR -108 160 96 8 1606 855 298 108 22 chr5 133848380 133848406 -18688853 + B4A SINE B4 2 38 -254 8 1606 3259 69 5 2 chr5 133848406 133848801 -18688458 - MTA_Mm LTR MaLR 0 396 1 8 1606 855 298 108 22 chr5 133848801 133849042 -18688217 + B4A SINE B4 39 292 0 8 1606 566 318 73 0 chr5 133849526 133849705 -18687554 - B3A SINE B2 -5 193 2 8 1606 816 299 91 39 chr5 133849708 133849918 -18687341 + MT2A LTR ERVL 3 232 -301 8 1606 387 0 0 0 chr5 133849918 133849961 -18687298 + (CTG)n Simple_repeat Simple_repeat 3 45 0 8 1606 816 299 91 39 chr5 133849961 133850188 -18687071 + MT2A LTR ERVL 233 462 -71 8 1606 356 315 137 34 chr5 133850262 133850525 -18686734 - B4A SINE B4 -2 290 1 8 1606 801 49 0 0 chr5 133850538 133850640 -18686619 + (TC)n Simple_repeat Simple_repeat 1 102 0 8 1606 351 0 0 0 chr5 133850640 133850678 -18686581 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1606 323 270 45 0 chr5 133851372 133851461 -18685798 + CT-rich Low_complexity Low_complexity 4 96 0 8 1606 574 319 11 78 chr5 133851476 133851656 -18685603 - B4A SINE B4 -119 173 6 8 1606 445 280 62 62 chr5 133851692 133851852 -18685407 - B3A SINE B2 -3 195 36 8 1606 434 302 68 11 chr5 133852276 133852467 -18684792 - Tigger5 DNA MER2_type -7 2399 2198 8 1606 1088 277 52 67 chr5 133852739 133853236 -18684023 - RMER15 LTR ERVL 0 575 1 8 1606 650 169 0 7 chr5 133853781 133853924 -18683335 + CT-rich Low_complexity Low_complexity 1 142 0 8 1606 201 156 14 72 chr5 133854013 133854082 -18683177 + CT-rich Low_complexity Low_complexity 2 66 0 8 1606 306 319 0 41 chr5 133854508 133854606 -18682653 + RSINE1 SINE B4 2 95 -70 8 1606 345 75 0 0 chr5 133854625 133854678 -18682581 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 8 1606 1256 56 7 0 chr5 133854942 133855086 -18682173 - B1_Mm SINE Alu 0 147 3 8 1606 237 170 56 19 chr5 133855090 133855144 -18682115 + B4 SINE B4 15 70 -222 8 1606 379 324 19 9 chr5 133855207 133855313 -18681946 + B4 SINE B4 174 280 -12 8 1606 423 0 0 0 chr5 133855314 133855361 -18681898 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1606 780 169 0 127 chr5 133855384 133855581 -18681678 - Lx4A LINE L1 0 7058 6887 8 1606 279 333 43 70 chr5 133856138 133856165 -18681094 - B3A SINE B2 0 198 17 8 1606 693 250 0 75 chr5 133856165 133856325 -18680934 - RSINE1 SINE B4 0 165 18 8 1606 564 263 174 9 chr5 133856410 133856629 -18680630 - ORR1E LTR MaLR -5 354 100 8 1606 515 221 0 0 chr5 133856805 133856900 -18680359 - ORR1E LTR MaLR -264 95 1 8 1606 611 339 55 38 chr5 133857565 133857930 -18679329 - ERVL-E-int LTR ERVL -1091 4576 4206 8 1606 651 67 0 0 chr5 133857932 133858021 -18679238 + (TG)n Simple_repeat Simple_repeat 1 89 0 8 1606 822 331 12 12 chr5 133858040 133858288 -18678971 - B4A SINE B4 -25 267 20 8 1606 246 32 0 0 chr5 133858650 133858681 -18678578 + (T)n Simple_repeat Simple_repeat 1 31 0 8 1606 388 281 167 0 chr5 133859433 133859547 -18677712 + RSINE1 SINE B4 2 134 -31 8 1606 403 333 0 16 chr5 133859941 133860066 -18677193 - B4A SINE B4 -168 124 2 8 1606 478 122 53 20 chr5 133860542 133860693 -18676566 + (CA)n Simple_repeat Simple_repeat 2 157 0 8 1606 245 326 32 32 chr5 133860715 133860810 -18676449 - ORR1E LTR MaLR -210 149 55 8 1606 297 320 9 28 chr5 133860843 133860949 -18676310 - MLT1A1 LTR MaLR -295 113 10 8 1606 554 250 132 35 chr5 133861011 133861185 -18676074 - B4A SINE B4 0 292 102 8 1606 207 305 0 17 chr5 133862063 133862123 -18675136 - MIRm SINE MIR -1 275 217 8 1606 189 255 21 0 chr5 133862181 133862228 -18675031 - L2b LINE L2 -2 3373 3326 8 1606 355 318 0 18 chr5 133862430 133862539 -18674720 - B4A SINE B4 -4 288 182 8 1606 910 263 59 17 chr5 133862541 133862777 -18674482 + MTD LTR MaLR 3 248 -171 8 1606 305 197 24 49 chr5 133862856 133862979 -18674280 + (TATAA)n Simple_repeat Simple_repeat 3 122 0 8 1606 470 231 57 6 chr5 133863074 133863258 -18674001 + MTD LTR MaLR 197 416 -3 8 1606 2103 176 65 28 chr5 133863258 133863656 -18673603 + MTC LTR MaLR 1 413 -8 8 1606 192 40 0 0 chr5 133863656 133863681 -18673578 + (A)n Simple_repeat Simple_repeat 1 25 0 8 1606 442 296 7 52 chr5 133863832 133863985 -18673274 - RMER5 LTR ERV1 0 534 389 8 1606 1396 240 55 3 chr5 133863963 133864272 -18672987 - MTD LTR MaLR -94 325 1 8 1606 220 328 0 0 chr5 133864421 133864479 -18672780 + ID4_ SINE ID 23 80 -3 8 1606 182 174 0 21 chr5 133864484 133864531 -18672728 + GA-rich Low_complexity Low_complexity 3 48 0 8 1606 449 308 94 25 chr5 133864608 133864768 -18672491 + B4A SINE B4 100 270 -22 8 1606 387 0 0 0 chr5 133864786 133864829 -18672430 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1606 654 173 0 0 chr5 133864829 133864991 -18672268 + GA-rich Low_complexity Low_complexity 1 162 0 8 1606 181 222 22 0 chr5 133865149 133865194 -18672065 + L2a LINE L2 3377 3422 -4 8 1606 261 363 63 37 chr5 133865732 133865921 -18671338 + MIRb SINE MIR 69 262 -6 8 1606 633 288 28 28 chr5 133866229 133866411 -18670848 - B3A SINE B2 -16 182 1 8 1606 415 230 0 0 chr5 133866673 133866747 -18670512 + B4 SINE B4 16 89 -203 8 1606 642 282 0 7 chr5 133866761 133866904 -18670355 + B4 SINE B4 145 286 -6 8 1606 285 373 49 41 chr5 133867072 133867195 -18670064 - MER82 DNA MER2_type -14 639 516 8 1606 429 262 9 9 chr5 133867219 133867327 -18669932 - ID_B1 SINE B4 -1 223 116 8 1606 241 289 0 0 chr5 133867400 133867452 -18669807 + B4 SINE B4 231 282 -10 8 1606 189 0 0 0 chr5 133867475 133867496 -18669763 + (CA)n Simple_repeat Simple_repeat 2 22 0 9 1606 324 0 0 0 chr5 133867496 133867531 -18669728 + (GA)n Simple_repeat Simple_repeat 2 37 0 9 1606 236 311 54 32 chr5 133867603 133867696 -18669563 - ORR1E LTR MaLR -64 306 212 9 1606 192 77 0 0 chr5 133867704 133867730 -18669529 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 9 1606 513 287 10 50 chr5 133867790 133867988 -18669271 - ORR1E LTR MaLR -169 190 1 9 1606 475 280 87 21 chr5 133868042 133868248 -18669011 - MTD LTR MaLR -14 405 157 9 1606 207 0 0 0 chr5 133868516 133868539 -18668720 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1606 1156 258 49 65 chr5 133868539 133868908 -18668351 - MTE2a LTR MaLR -16 363 1 9 1606 225 94 0 0 chr5 133868994 133869026 -18668233 + (CA)n Simple_repeat Simple_repeat 1 32 0 9 1606 228 292 31 73 chr5 133869105 133869201 -18668058 - L1M5 LINE L1 -244 5920 5829 9 1606 195 42 0 0 chr5 133869307 133869331 -18667928 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1606 284 314 8 8 chr5 133869338 133869463 -18667796 - L1M5 LINE L1 -1062 5084 4960 9 1606 702 276 40 11 chr5 133869475 133869651 -18667608 - B3A SINE B2 -16 182 2 9 1606 1089 287 48 50 chr5 133869682 133870124 -18667135 - L1M5 LINE L1 -1327 4819 4378 9 1606 747 249 49 34 chr5 133870124 133870328 -18666931 + B3 SINE B2 1 207 -9 9 1606 1089 287 48 50 chr5 133870328 133870431 -18666828 - L1M5 LINE L1 -1769 4377 4275 9 1606 227 279 0 29 chr5 133871197 133871267 -18665992 - L1M5 LINE L1 -1936 4210 4143 9 1606 320 308 47 86 chr5 133871448 133871576 -18665683 - B1F SINE Alu -9 140 18 9 1606 485 0 33 0 chr5 133871842 133871902 -18665357 + (TTTTA)n Simple_repeat Simple_repeat 2 63 0 9 1606 632 192 117 0 chr5 133871902 133872022 -18665237 - B1_Mur2 SINE Alu -14 135 2 9 1606 1139 257 52 52 chr5 133872146 133872552 -18664707 - Lx8 LINE L1 0 7473 7068 9 1606 363 309 87 110 chr5 133873048 133873179 -18664080 - B4 SINE B4 0 292 163 9 1606 837 30 0 0 chr5 133873179 133873279 -18663980 + (TG)n Simple_repeat Simple_repeat 2 101 0 9 1606 363 309 87 110 chr5 133873279 133873365 -18663894 - B4 SINE B4 -130 162 81 9 1606 1315 272 0 10 chr5 133873381 133873678 -18663581 - Lx6 LINE L1 -31 7429 7136 9 1606 218 341 73 0 chr5 133873684 133873766 -18663493 - B4A SINE B4 -202 90 3 9 1606 189 0 0 0 chr5 133873780 133873801 -18663458 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 9 1606 550 244 157 19 chr5 133873820 133873979 -18663280 - B3A SINE B2 -17 181 1 9 1606 277 247 25 49 chr5 133874041 133874122 -18663137 + ID4 SINE ID 3 81 -2 9 1606 834 277 12 31 chr5 133874481 133874712 -18662547 + B3A SINE B2 1 216 0 9 1606 261 314 19 10 chr5 133874916 133875019 -18662240 + L1M5 LINE L1 5566 5669 -525 9 1606 195 42 0 0 chr5 133875244 133875268 -18661991 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 9 1606 333 0 0 0 chr5 133875447 133875484 -18661775 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1606 677 306 29 0 chr5 133875502 133875672 -18661587 - B3A SINE B2 -16 182 8 9 1606 649 250 0 99 chr5 133875864 133876046 -18661213 + RSINE1 SINE B4 2 165 0 9 1606 576 0 0 0 chr5 133876065 133876129 -18661130 + (GA)n Simple_repeat Simple_repeat 2 65 0 9 1606 495 27 41 0 chr5 133877265 133877338 -18659921 + (GA)n Simple_repeat Simple_repeat 1 76 0 9 1606 835 333 27 15 chr5 133878575 133878834 -18658425 - B4 SINE B4 -28 264 3 9 1606 338 292 75 9 chr5 133879016 133879123 -18658136 - PB1D10 SINE Alu -1 116 3 9 1606 219 167 0 0 chr5 133879429 133879471 -18657788 + (CA)n Simple_repeat Simple_repeat 2 43 0 9 1606 22 56 0 0 chr5 133879482 133879518 -18657741 + AT_rich Low_complexity Low_complexity 1 36 0 9 1606 492 18 0 0 chr5 133879728 133879785 -18657474 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 9 1606 5549 137 17 8 chr5 133879785 133881552 -18655707 - Lx3A LINE L1 -27 6973 5169 9 1606 294 56 0 0 chr5 133881551 133881587 -18655672 + Lx3A LINE L1 5136 5171 -715 9 1606 1191 136 11 37 chr5 133881596 133881787 -18655472 - B2_Mm2 SINE B2 -9 186 1 9 1606 29309 149 33 54 chr5 133881903 133883483 -18653776 + L1_Mus3 LINE L1 537 2070 -3813 9 1606 315 0 0 0 chr5 133883483 133883518 -18653741 + (CAA)n Simple_repeat Simple_repeat 2 36 0 9 1606 29309 126 14 11 chr5 133883518 133883892 -18653367 + L1_Mus3 LINE L1 2071 2456 -3427 9 1606 210 37 0 0 chr5 133883892 133883919 -18653340 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1606 29309 126 14 11 chr5 133883919 133887020 -18650239 + L1_Mus3 LINE L1 2457 5574 -309 9 1606 2846 42 0 9 chr5 133887020 133887353 -18649906 + L1Md_F2 LINE L1 6253 6582 0 9 1606 29309 81 19 0 chr5 133887353 133888420 -18648839 + L1_Mus3 LINE L1 5575 6638 0 9 1606 552 284 123 0 chr5 133888438 133888600 -18648659 + B3 SINE B2 24 205 -11 9 1606 633 310 88 8 chr5 133888620 133888880 -18648379 - Lx7 LINE L1 -1783 5913 5633 9 1606 1217 209 77 30 chr5 133888907 133889273 -18647986 + Lx9 LINE L1 7261 7643 -1 9 1606 331 138 43 0 chr5 133889649 133889743 -18647516 + (CAGAGA)n Simple_repeat Simple_repeat 4 101 0 9 1606 501 17 0 0 chr5 133889767 133889825 -18647434 + (TC)n Simple_repeat Simple_repeat 2 59 0 9 1606 810 31 0 0 chr5 133889825 133889921 -18647338 + (TG)n Simple_repeat Simple_repeat 2 98 0 9 1606 633 238 23 98 chr5 133890191 133890405 -18646854 - B3A SINE B2 0 198 1 9 1606 549 0 0 0 chr5 133890605 133890666 -18646593 + (CA)n Simple_repeat Simple_repeat 2 62 0 9 1606 275 239 15 0 chr5 133890696 133890763 -18646496 - L1_Rod LINE L1 -83 5764 5697 9 1606 289 286 79 50 chr5 133891538 133891740 -18645519 + RMER15 LTR ERVL 347 554 -21 9 1606 432 0 0 0 chr5 133891891 133891939 -18645320 + (CATA)n Simple_repeat Simple_repeat 3 50 0 9 1606 570 191 0 0 chr5 133892154 133892285 -18644974 + CT-rich Low_complexity Low_complexity 1 131 0 9 1606 224 370 0 0 chr5 133892328 133892401 -18644858 - ID4_ SINE ID -10 73 1 9 1606 736 295 25 3 chr5 133892373 133892656 -18644603 - ZP3AR Satellite Satellite -142 289 1 9 1606 21 36 0 0 chr5 133892858 133892886 -18644373 + AT_rich Low_complexity Low_complexity 1 28 0 9 1606 1096 62 37 12 chr5 133893031 133893195 -18644064 + B2_Mm2 SINE B2 2 169 -26 9 1606 600 291 0 19 chr5 133893343 133893504 -18643755 + B3A SINE B2 3 160 -38 9 1606 432 0 0 0 chr5 133893511 133893559 -18643700 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1606 384 339 9 9 chr5 133894003 133894116 -18643143 + RSINE1 SINE B4 2 114 -51 9 1606 246 32 0 0 chr5 133894118 133894149 -18643110 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1606 405 0 0 0 chr5 133894149 133894193 -18643066 + (GA)n Simple_repeat Simple_repeat 2 46 0 9 1606 572 329 43 0 chr5 133894589 133894796 -18642463 - ID_B1 SINE B4 -7 217 2 9 1606 475 339 40 63 chr5 133894878 133895177 -18642082 + ORR1E LTR MaLR 3 294 -65 9 1606 486 332 10 30 chr5 133895187 133895389 -18641870 + MTD LTR MaLR 1 198 -221 9 1606 1621 221 125 11 chr5 133895548 133896005 -18641254 + RMER15 LTR ERVL 27 535 -40 9 1606 456 248 176 8 chr5 133896018 133896206 -18641053 + MTD LTR MaLR 181 403 -16 9 1606 706 216 7 33 chr5 133896652 133896805 -18640454 - B1_Mur2 SINE Alu 0 149 1 9 1606 200 170 0 36 chr5 133896808 133896863 -18640396 + T-rich Low_complexity Low_complexity 4 56 0 9 1606 1294 259 77 24 chr5 133896864 133897243 -18640016 + MTD LTR MaLR 13 411 -8 9 1606 492 298 36 108 chr5 133897508 133897929 -18639330 + MTE2a LTR MaLR 1 351 -68 9 1606 673 324 75 14 chr5 133897996 133898275 -18638984 + MER82 DNA MER2_type 9 304 -349 9 1606 4461 197 38 37 chr5 133898317 133899294 -18637965 - Lx2B LINE L1 -13 6987 6010 9 1606 581 166 0 8 chr5 133899351 133899606 -18637653 + (CAGAGA)n Simple_repeat Simple_repeat 1 253 0 9 1606 611 87 10 0 chr5 133899618 133899722 -18637537 + (GA)n Simple_repeat Simple_repeat 1 105 0 9 1606 1497 260 19 5 chr5 133899851 133900219 -18637040 + MTEa LTR MaLR 1 373 -6 9 1606 5223 72 15 0 chr5 133900221 133900892 -18636367 + L1_Mus1 LINE L1 5886 6566 -1 9 1606 275 352 48 59 chr5 133901137 133901324 -18635935 + ORR1E LTR MaLR 11 195 -164 9 1606 223 167 0 53 chr5 133901754 133901811 -18635448 - PB1D9 SINE Alu -1 119 66 9 1606 382 341 66 52 chr5 133901953 133902361 -18634898 - L1MEa LINE L1 -5114 956 543 9 1606 367 212 169 0 chr5 133902470 133902588 -18634671 - MTD LTR MaLR -9 370 233 9 1606 273 233 0 0 chr5 133902591 133902651 -18634608 + MERVL-int LTR ERVL 4454 4513 -972 9 1606 691 305 28 24 chr5 133902651 133902903 -18634356 - MTD LTR MaLR -159 260 8 9 1606 759 256 0 84 chr5 133903023 133903236 -18634023 - B3A SINE B2 -2 196 2 9 1606 1027 125 6 11 chr5 133903252 133903430 -18633829 + (TTCTC)n Simple_repeat Simple_repeat 1 177 0 9 1606 192 152 0 0 chr5 133903448 133903481 -18633778 + T-rich Low_complexity Low_complexity 1 33 0 9 1606 1070 264 70 27 chr5 133903589 133903963 -18633296 + MTD LTR MaLR 10 399 -20 9 1606 245 246 95 14 chr5 133904422 133904496 -18632763 - ID4_ SINE ID -3 80 1 9 1606 1158 134 6 0 chr5 133904496 133904709 -18632550 - ZP3AR Satellite Satellite -11 214 1 9 1606 275 289 13 0 chr5 133905082 133905158 -18632101 - B1F SINE Alu -7 142 66 9 1606 270 0 0 0 chr5 133905333 133905363 -18631896 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 9 1606 296 263 66 66 chr5 133905394 133905516 -18631743 - B3 SINE B2 -14 202 81 9 1606 2019 171 10 41 chr5 133905565 133905981 -18631278 - RLTR11A LTR ERVK -125 403 1 9 1606 1645 218 43 162 chr5 133906133 133906714 -18630545 + RLTR18B LTR ERVK 1 512 0 9 1606 276 203 17 0 chr5 133906739 133906798 -18630461 - B1F2 SINE Alu -89 60 1 9 1606 371 73 0 18 chr5 133906926 133906982 -18630277 + (TTA)n Simple_repeat Simple_repeat 1 55 0 9 1606 327 130 0 0 chr5 133907083 133907137 -18630122 + (TG)n Simple_repeat Simple_repeat 1 54 0 9 1606 595 264 6 48 chr5 133907190 133907357 -18629902 - RSINE1 SINE B4 -2 163 4 9 1606 1032 8 0 0 chr5 133908663 133908780 -18628479 + (GA)n Simple_repeat Simple_repeat 2 118 0 9 1606 321 47 0 0 chr5 133909182 133909225 -18628034 + (TTTTG)n Simple_repeat Simple_repeat 4 46 0 9 1606 415 314 8 17 chr5 133909235 133909355 -18627904 + RSINE1 SINE B4 29 147 -18 9 1606 26 64 0 0 chr5 133909376 133909423 -18627836 + AT_rich Low_complexity Low_complexity 1 47 0 9 1606 1031 46 15 44 chr5 133909476 133909613 -18627646 + B1_Mm SINE Alu 2 134 -13 1 1606 198 0 0 0 chr5 133909613 133909635 -18627624 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 1 1606 369 0 0 0 chr5 133909636 133909677 -18627582 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1606 1921 56 0 1 chr5 133909677 133909924 -18627335 + L1_Mus2 LINE L1 5761 6011 -555 1 1606 1579 59 0 0 chr5 133909924 133910127 -18627132 + L1_Mus2 LINE L1 6364 6566 0 1 1606 5630 65 7 11 chr5 133910136 133910873 -18626386 + L1_Mus3 LINE L1 5905 6638 0 1 1606 592 257 60 22 chr5 133910873 133911056 -18626203 + B3 SINE B2 27 216 0 1 1606 231 242 97 0 chr5 133911116 133911178 -18626081 + PB1D10 SINE Alu 9 76 -41 1 1606 396 245 9 38 chr5 133911188 133911294 -18625965 + PB1D7 SINE Alu 9 111 -9 1 1606 460 311 30 36 chr5 133911385 133911552 -18625707 + B4A SINE B4 65 230 -62 1 1606 3310 239 82 86 chr5 133912012 133913550 -18623709 + RMER1A Other Other 1 911 -119 1 1606 405 0 0 0 chr5 133913550 133913595 -18623664 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1606 3310 198 87 132 chr5 133913595 133913695 -18623564 + RMER1A Other Other 912 1029 -1 1 1606 405 0 0 0 chr5 133913835 133913880 -18623379 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 1 1606 921 277 149 88 chr5 133914210 133914741 -18622518 + Lx8 LINE L1 6894 7456 -17 1 1606 220 122 20 39 chr5 133915340 133915391 -18621868 + CT-rich Low_complexity Low_complexity 2 51 0 1 1606 232 325 26 0 chr5 133915405 133915482 -18621777 - ID4 SINE ID -2 81 3 1 1606 1564 244 50 6 chr5 133917659 133918022 -18619237 - MTEb LTR MaLR 0 379 1 1 1606 451 316 79 0 chr5 133918200 133918339 -18618920 - RSINE1 SINE B4 -13 152 3 1 1606 459 315 29 29 chr5 133918420 133918698 -18618561 + MamRep434 DNA TcMar 96 373 -53 1 1606 253 366 87 5 chr5 133918790 133918985 -18618274 + L4 LINE RTE 1628 1838 -191 1 1606 200 267 0 16 chr5 133918985 133919046 -18618213 + MER5A DNA MER1_type 130 189 0 1 1606 226 156 43 72 chr5 133919455 133919524 -18617735 - RMER15 LTR ERVL -453 122 56 1 1606 351 329 80 61 chr5 133919560 133919888 -18617371 + MLT1A LTR MaLR 49 383 -7 1 1606 433 294 47 8 chr5 133920354 133920481 -18616778 + ID_B1 SINE B4 80 211 -13 1 1606 441 0 0 0 chr5 133920481 133920530 -18616729 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1606 280 379 45 15 chr5 133920579 133920713 -18616546 - B1F2 SINE Alu -7 142 5 1 1606 683 269 52 84 chr5 133920827 133921136 -18616123 - RMER15 LTR ERVL 0 575 277 1 1606 317 174 40 128 chr5 133921138 133921263 -18615996 - RMER15 LTR ERVL -417 158 45 1 1606 759 300 9 0 chr5 133921683 133921893 -18615366 + ID_B1 SINE B4 4 215 -9 1 1606 23 54 0 0 chr5 133921893 133921930 -18615329 + AT_rich Low_complexity Low_complexity 1 37 0 1 1606 38 39 0 0 chr5 133922328 133922380 -18614879 + AT_rich Low_complexity Low_complexity 1 52 0 1 1606 830 281 32 103 chr5 133922462 133922842 -18614417 - MTE2a LTR MaLR -26 353 1 1 1606 659 233 56 17 chr5 133923109 133923288 -18613971 - ID_B1 SINE B4 -6 218 33 1 1606 373 309 5 23 chr5 133923982 133924378 -18612881 + CT-rich Low_complexity Low_complexity 1 388 0 1 1606 864 73 137 0 chr5 133924404 133924528 -18612731 - B1_Mus2 SINE Alu -5 142 2 1 1606 207 0 0 0 chr5 133924630 133924653 -18612606 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1606 252 86 0 0 chr5 133924810 133924845 -18612414 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1606 322 268 0 0 chr5 133924889 133924960 -18612299 + Lx8 LINE L1 7071 7141 -332 1 1606 453 115 0 0 chr5 133925187 133925274 -18611985 + (TTAG)n Simple_repeat Simple_repeat 3 89 0 1 1606 1131 37 15 0 chr5 133925274 133925409 -18611850 - B1_Mus1 SINE Alu -8 140 4 1 1606 498 17 0 0 chr5 133925710 133925769 -18611490 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1606 363 23 0 0 chr5 133925769 133925813 -18611446 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1606 595 168 0 0 chr5 133926639 133926752 -18610507 - URR1B DNA MER1_type 0 225 113 1 1606 255 170 0 0 chr5 133926951 133926998 -18610261 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1606 668 279 90 58 chr5 133927769 133927949 -18609310 - B4A SINE B4 -4 288 108 1 1606 468 0 0 0 chr5 133927949 133928001 -18609258 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1606 668 279 90 58 chr5 133928001 133928098 -18609161 - B4A SINE B4 -185 107 4 1 1606 803 284 119 24 chr5 133928282 133928433 -18608826 + ORR1E LTR MaLR 1 156 -203 1 1606 468 0 0 0 chr5 133928433 133928485 -18608774 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1606 369 0 0 0 chr5 133928485 133928525 -18608734 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1606 803 284 119 24 chr5 133928525 133928700 -18608559 + ORR1E LTR MaLR 157 358 -1 1 1606 733 322 52 15 chr5 133928751 133929022 -18608237 - B4 SINE B4 -10 282 2 1 1606 200 293 0 0 chr5 133929198 133929256 -18608003 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1 1606 424 168 67 9 chr5 133930403 133930623 -18606636 + (TATATG)n Simple_repeat Simple_repeat 1 232 0 1 1606 197 65 32 0 chr5 133930647 133930678 -18606581 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1606 273 57 0 0 chr5 133930679 133930714 -18606545 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1606 363 44 0 0 chr5 133930714 133930759 -18606500 + (GGA)n Simple_repeat Simple_repeat 2 46 0 1 1606 501 284 6 173 chr5 133931029 133931365 -18605894 + B4A SINE B4 3 282 -10 1 1606 245 247 36 36 chr5 133931436 133931520 -18605739 - MTEb LTR MaLR -18 361 278 1 1606 420 306 48 48 chr5 133931665 133931995 -18605264 - L1MC3 LINE L1 -1809 5976 5647 1 1606 361 301 40 11 chr5 133932518 133932658 -18604601 - B3A SINE B2 -33 162 13 1 1606 300 260 68 14 chr5 133932688 133932762 -18604497 - ID SINE ID -146 78 1 1 1606 571 272 37 65 chr5 133933119 133933335 -18603924 - MTEb LTR MaLR 0 379 170 1 1606 314 357 38 23 chr5 133933368 133933500 -18603759 - RSINE1 SINE B4 0 165 32 1 1606 331 312 149 0 chr5 133933523 133933664 -18603595 - MTEb LTR MaLR -200 179 18 1 1606 758 109 7 0 chr5 133933723 133933860 -18603399 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 1 1606 283 336 99 28 chr5 133934560 133934701 -18602558 + RSINE1 SINE B4 3 153 -12 1 1606 209 140 0 23 chr5 133934707 133934751 -18602508 + GA-rich Low_complexity Low_complexity 2 44 0 1 1606 868 270 37 74 chr5 133934770 133935066 -18602193 + B4A SINE B4 2 286 -6 1 1606 301 162 29 0 chr5 133935072 133935140 -18602119 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1606 182 211 0 34 chr5 133935424 133935483 -18601776 + (CAT)n Simple_repeat Simple_repeat 3 59 0 1 1606 1135 211 73 15 chr5 133935483 133935743 -18601516 + MTD LTR MaLR 20 294 -125 1 1606 233 266 15 45 chr5 133935756 133935823 -18601436 + RMER15 LTR ERVL 1 65 -510 1 1606 2051 229 65 17 chr5 133935904 133936428 -18600831 + RMER15 LTR ERVL 27 575 0 1 1606 1888 84 84 42 chr5 133936626 133936960 -18600299 - RLTR10B2 LTR ERVK 0 365 18 1 1606 290 71 0 0 chr5 133936982 133937024 -18600235 - RLTR10B2 LTR ERVK -250 42 1 1 1606 7695 52 0 28 chr5 133937024 133937982 -18599277 - MMERVK10C-int LTR ERVK 0 7581 6651 1 1606 42721 40 1 1 chr5 133937973 133942910 -18594349 - MMERVK10C-int LTR ERVK -1771 5810 870 1 1606 2828 102 23 10 chr5 133942908 133943302 -18593957 - MMERVK10C-int LTR ERVK -7182 399 1 1 1606 1912 81 84 39 chr5 133943302 133943635 -18593624 - RLTR10B2 LTR ERVK 0 365 18 1 1606 1512 68 2 0 chr5 133943718 133944070 -18593189 + ZP3AR Satellite Satellite 1 352 0 1 1606 38737 14 3 7 chr5 133944544 133949954 -18587305 + L1Md_A LINE L1 204 5586 -297 1 1606 8929 17 0 0 chr5 133949954 133950949 -18586310 + L1Md_A LINE L1 5587 6581 -1 1 1606 426 69 0 0 chr5 133951457 133951515 -18585744 + (A)n Simple_repeat Simple_repeat 1 58 0 1 1606 383 322 0 9 chr5 133951516 133951632 -18585627 + ID_B1 SINE B4 108 222 -2 1 1606 231 151 0 0 chr5 133951637 133951651 -18585608 + A-rich Low_complexity Low_complexity 1 14 0 1 1606 1260 34 0 0 chr5 133951651 133951799 -18585460 + B1_Mus1 SINE Alu 1 148 0 1 1606 231 151 0 0 chr5 133951799 133951837 -18585422 + A-rich Low_complexity Low_complexity 15 52 0 1 1606 31 0 0 0 chr5 133951838 133951869 -18585390 + AT_rich Low_complexity Low_complexity 1 31 0 1 1606 275 410 20 14 chr5 133952352 133952498 -18584761 - LTR16A LTR ERVL -121 330 184 1 1606 226 379 59 56 chr5 133952651 133952989 -18584270 + ORR1E LTR MaLR 20 358 -1 1 1606 265 250 59 0 chr5 133952989 133953040 -18584219 - LTR16A LTR ERVL -358 93 39 1 1606 4112 160 26 26 chr5 133953130 133953886 -18583373 + RMER6A LTR ERVK 1 756 0 1 1606 210 304 95 29 chr5 133954044 133954149 -18583110 - MIR3 SINE MIR -34 174 63 1 1606 645 282 18 40 chr5 133954382 133954607 -18582652 + RMER15 LTR ERVL 339 558 -17 1 1606 402 101 0 0 chr5 133954978 133955047 -18582212 + (GA)n Simple_repeat Simple_repeat 2 70 0 1 1607 1372 267 14 79 chr5 133955886 133956390 -18580869 + Lx9 LINE L1 7007 7477 -167 1 1607 210 281 0 17 chr5 133956739 133956797 -18580462 + GA-rich Low_complexity Low_complexity 1 57 0 1 1607 1915 171 82 23 chr5 133956900 133957289 -18579970 - MTC LTR MaLR -8 413 2 1 1607 301 111 0 0 chr5 133957537 133957582 -18579677 + MTC LTR MaLR 1 45 -376 1 1607 514 259 38 0 chr5 133957625 133957756 -18579503 + B4 SINE B4 118 253 -39 1 1607 423 0 0 0 chr5 133957770 133957817 -18579442 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1607 189 94 0 0 chr5 133957817 133957849 -18579410 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1607 641 234 57 138 chr5 133959144 133959462 -18577797 + B4 SINE B4 1 292 0 1 1607 213 181 13 63 chr5 133959462 133959621 -18577638 + (CA)n Simple_repeat Simple_repeat 1 151 0 1 1607 192 40 0 0 chr5 133959928 133959953 -18577306 + (CTATA)n Simple_repeat Simple_repeat 3 27 0 1 1607 2388 146 116 8 chr5 133959955 133960431 -18576828 - RLTR11A2 LTR ERVK 0 527 1 1 1607 226 213 0 0 chr5 133960431 133960478 -18576781 + (CATAC)n Simple_repeat Simple_repeat 3 49 0 1 1607 438 324 0 21 chr5 133960529 133960671 -18576588 - ID_B1 SINE B4 0 224 86 1 1607 633 347 41 24 chr5 133960780 133961075 -18576184 + Lx8 LINE L1 7102 7401 -72 1 1607 461 287 13 65 chr5 133961211 133961364 -18575895 - B3A SINE B2 -52 146 2 1 1607 226 148 56 0 chr5 133961838 133961892 -18575367 + T-rich Low_complexity Low_complexity 3 59 0 1 1607 375 23 0 0 chr5 133961936 133961980 -18575279 + (AATAG)n Simple_repeat Simple_repeat 5 48 0 1 1607 1501 4 9 0 chr5 133962564 133962794 -18574465 + (GGGAGA)n Simple_repeat Simple_repeat 1 232 0 1 1607 646 316 6 6 chr5 133962797 133962966 -18574293 - B4 SINE B4 -38 254 86 1 1607 1230 229 90 59 chr5 133962964 133963353 -18573906 + MTD LTR MaLR 5 405 -14 1 1607 468 287 75 53 chr5 133964351 133964616 -18572643 + B4 SINE B4 1 271 -21 1 1607 1019 234 26 39 chr5 133964962 133965269 -18571990 - RMER15 LTR ERVL 0 575 273 1 1607 293 292 21 97 chr5 133965263 133965407 -18571852 - RMER15 LTR ERVL -415 160 28 1 1607 272 125 0 15 chr5 133965411 133965476 -18571783 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 1 1607 531 66 0 0 chr5 133965803 133965879 -18571380 + (GA)n Simple_repeat Simple_repeat 2 77 0 1 1607 1186 126 17 0 chr5 133965983 133966157 -18571102 - B2_Mm2 SINE B2 -18 177 1 1 1607 540 194 0 0 chr5 133966163 133966256 -18571003 - B3A SINE B2 -104 94 2 1 1607 249 312 44 9 chr5 133966256 133966369 -18570890 + MER58B DNA MER1_type 220 336 -5 1 1607 292 362 7 84 chr5 133966547 133966689 -18570570 - B4 SINE B4 0 292 162 1 1607 710 130 8 0 chr5 133967391 133967522 -18569737 + (TC)n Simple_repeat Simple_repeat 2 133 0 1 1607 393 333 11 6 chr5 133967648 133967826 -18569433 + CT-rich Low_complexity Low_complexity 2 180 0 1 1607 380 38 38 0 chr5 133967830 133967883 -18569376 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 1 1607 220 337 0 33 chr5 133967904 133967979 -18569280 + polypyrimidine Low_complexity Low_complexity 107 179 0 1 1607 540 65 0 0 chr5 133967979 133968056 -18569203 + (TC)n Simple_repeat Simple_repeat 2 78 0 1 1607 220 337 0 33 chr5 133968056 133968164 -18569095 + CT-rich Low_complexity Low_complexity 2 106 0 1 1607 409 360 12 12 chr5 133968178 133968341 -18568918 + MLT1I LTR MaLR 239 401 -10 1 1607 740 214 0 6 chr5 133968606 133968780 -18568479 + GA-rich Low_complexity Low_complexity 4 176 0 1 1607 665 262 21 0 chr5 133968834 133968979 -18568280 - B3A SINE B2 -46 152 5 1 1607 235 314 40 16 chr5 133969086 133969212 -18568047 + B1F SINE Alu 10 138 -11 1 1607 472 295 22 37 chr5 133969260 133969394 -18567865 + RSINE1 SINE B4 21 152 -13 1 1607 502 290 8 0 chr5 133969532 133969663 -18567596 - B4 SINE B4 -3 289 158 1 1607 2210 154 109 9 chr5 133969675 133970084 -18567175 - RLTR28 LTR ERVL -11 513 91 1 1607 324 0 0 0 chr5 133970084 133970120 -18567139 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1607 2210 154 109 9 chr5 133970120 133970176 -18567083 - RLTR28 LTR ERVL -434 90 3 1 1607 487 269 43 106 chr5 133970176 133970335 -18566924 - B4 SINE B4 -145 147 2 1 1607 1519 143 86 0 chr5 133970397 133970676 -18566583 - MTC LTR MaLR -118 303 1 1 1607 1334 238 49 20 chr5 133970676 133971024 -18566235 - ORR1D1 LTR MaLR -16 358 1 1 1607 1317 54 12 15 chr5 133971059 133971999 -18565260 + (TG)n Simple_repeat Simple_repeat 1 936 0 1 1607 256 289 140 28 chr5 133972003 133972110 -18565149 - RSINE1 SINE B4 -22 143 25 1 1607 245 273 61 0 chr5 133973117 133973183 -18564076 + B4A SINE B4 26 95 -197 1 1607 285 286 124 9 chr5 133973204 133973317 -18563942 + B4A SINE B4 132 257 -35 1 1607 261 0 0 0 chr5 133973351 133973380 -18563879 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1607 387 269 87 0 chr5 133973568 133973672 -18563587 + PB1 SINE Alu 13 125 -2 1 1607 796 271 33 139 chr5 133973757 133973962 -18563297 - MTE2a LTR MaLR 0 379 193 1 1607 234 0 0 0 chr5 133973962 133973988 -18563271 + (CTTG)n Simple_repeat Simple_repeat 4 29 0 1 1607 796 271 33 139 chr5 133973988 133974206 -18563053 - MTE2a LTR MaLR -187 192 1 1 1607 1127 112 11 0 chr5 133974223 133974401 -18562858 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1607 454 190 42 18 chr5 133974419 133974585 -18562674 + GA-rich Low_complexity Low_complexity 4 173 0 1 1607 919 83 15 0 chr5 133975161 133975294 -18561965 + B1_Mus1 SINE Alu 9 143 -5 1 1607 748 208 69 6 chr5 133975321 133975495 -18561764 + MTE2a LTR MaLR 1 185 -194 1 1607 553 263 30 56 chr5 133975564 133975837 -18561422 + L1MB8 LINE L1 5060 5327 -819 1 1607 634 297 17 0 chr5 133975841 133976016 -18561243 + B3A SINE B2 1 178 -20 1 1607 3196 67 5 2 chr5 133976216 133976635 -18560624 - L1_Mus2 LINE L1 0 6566 6147 1 1607 1158 55 0 7 chr5 133976635 133976783 -18560476 + L1_Mus2 LINE L1 6015 6161 -405 1 1607 271 262 180 47 chr5 133976781 133976971 -18560288 + L1MB8 LINE L1 5521 5705 -479 1 1607 294 95 0 0 chr5 133976971 133977013 -18560246 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1607 271 262 180 47 chr5 133977013 133977122 -18560137 + L1MB8 LINE L1 5706 5859 -325 1 1607 651 319 75 61 chr5 133977123 133977483 -18559776 + MTD LTR MaLR 1 365 -54 1 1607 266 214 43 0 chr5 133977518 133977588 -18559671 + L1MB8 LINE L1 5858 5930 -248 1 1607 551 226 9 16 chr5 133977594 133977724 -18559535 + B1_Mur4 SINE Alu 1 119 -1 1 1607 489 272 40 11 chr5 133977856 133978031 -18559228 + L1MB8 LINE L1 5996 6175 -3 1 1607 597 294 52 14 chr5 133978027 133978274 -18558985 + L1M7 LINE L1 1589 1758 -4485 1 1607 404 259 108 30 chr5 133978344 133978511 -18558748 + B3A SINE B2 3 182 -16 1 1607 25 0 0 0 chr5 133978518 133978543 -18558716 + AT_rich Low_complexity Low_complexity 1 25 0 1 1607 190 81 26 26 chr5 133979010 133979048 -18558211 + (TA)n Simple_repeat Simple_repeat 2 39 0 1 1607 281 140 0 17 chr5 133979154 133979212 -18558047 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1607 268 295 130 27 chr5 133979267 133979490 -18557769 + L1MC4 LINE L1 7271 7516 -526 1 1607 802 255 10 14 chr5 133979575 133979782 -18557477 - ORR1E LTR MaLR -146 213 8 1 1607 243 303 0 13 chr5 133979810 133979887 -18557372 + B4A SINE B4 192 267 -25 1 1607 251 140 0 20 chr5 133980018 133980069 -18557190 + GA-rich Low_complexity Low_complexity 3 52 0 1 1607 1064 272 85 31 chr5 133980174 133980527 -18556732 + MTE2a LTR MaLR 2 373 -6 1 1607 219 230 23 11 chr5 133980552 133980640 -18556619 + CT-rich Low_complexity Low_complexity 1 89 0 1 1607 233 232 42 28 chr5 133980791 133980862 -18556397 + MTEa LTR MaLR 302 373 -6 1 1607 509 361 51 115 chr5 133980853 133981263 -18555996 + MLT2B2 LTR ERVL 132 515 0 1 1607 251 196 0 19 chr5 133982065 133982117 -18555142 + MIRc SINE MIR 99 149 -119 1 1607 479 309 0 0 chr5 133982123 133982233 -18555026 + B4A SINE B4 3 112 -180 1 1607 1625 211 54 10 chr5 133982242 133982630 -18554629 - MTD LTR MaLR -14 405 1 1 1607 401 207 53 2 chr5 133982631 133982724 -18554535 + B4A SINE B4 116 213 -79 1 1607 291 293 13 0 chr5 133982748 133982823 -18554436 + GA-rich Low_complexity Low_complexity 3 78 0 1 1607 1389 51 0 0 chr5 133982823 133983037 -18554222 + (GA)n Simple_repeat Simple_repeat 1 214 0 1 1607 409 313 177 26 chr5 133983368 133983606 -18553653 + B4A SINE B4 11 284 -8 1 1607 234 0 0 0 chr5 133983632 133983658 -18553601 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1607 432 0 0 0 chr5 133983658 133983705 -18553554 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1607 337 335 94 12 chr5 133983934 133984094 -18553165 - L3 LINE CR1 -992 3497 3325 1 1607 1085 274 37 20 chr5 133984338 133984691 -18552568 + ORR1E LTR MaLR 1 359 0 1 1607 322 172 0 33 chr5 133984859 133984919 -18552340 + B1_Mur4 SINE Alu 3 60 -90 1 1607 216 158 0 0 chr5 133984922 133984979 -18552280 + GA-rich Low_complexity Low_complexity 124 180 0 1 1607 237 162 0 0 chr5 133984979 133985016 -18552243 + (CAGAGA)n Simple_repeat Simple_repeat 5 41 0 1 1607 719 78 0 0 chr5 133985037 133985140 -18552119 + B1_Mur4 SINE Alu 43 145 -5 1 1607 322 162 0 26 chr5 133985153 133985229 -18552030 + GA-rich Low_complexity Low_complexity 4 77 0 1 1607 1374 28 0 16 chr5 133985229 133985411 -18551848 + (GAA)n Simple_repeat Simple_repeat 2 180 0 1 1607 224 167 42 0 chr5 133985806 133985854 -18551405 + CT-rich Low_complexity Low_complexity 5 54 0 1 1607 255 189 0 0 chr5 133985873 133985926 -18551333 + CT-rich Low_complexity Low_complexity 1 53 0 1 1607 498 234 163 0 chr5 133986052 133986193 -18551066 + RSINE1 SINE B4 2 165 0 1 1607 204 40 0 0 chr5 133986283 133986308 -18550951 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1607 295 272 0 32 chr5 133986308 133986393 -18550866 + ID_B1 SINE B4 140 224 0 1 1607 254 284 0 0 chr5 133986440 133986507 -18550752 + L1M5 LINE L1 5651 5717 -467 1 1607 401 266 164 12 chr5 133986534 133986705 -18550554 - B3A SINE B2 -1 197 1 1 1607 315 312 16 0 chr5 133986709 133986837 -18550422 + L1M5 LINE L1 5705 5834 -345 1 1607 198 0 0 0 chr5 133986897 133986919 -18550340 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1607 21 0 0 0 chr5 133986967 133986988 -18550271 + AT_rich Low_complexity Low_complexity 1 21 0 1 1607 977 276 17 37 chr5 133987484 133987781 -18549478 + B4 SINE B4 2 292 0 1 1607 249 188 0 0 chr5 133988456 133988536 -18548723 + (TTG)n Simple_repeat Simple_repeat 2 81 0 1 1607 869 230 122 45 chr5 133988553 133988799 -18548460 + B4A SINE B4 22 286 -6 1 1607 357 225 12 24 chr5 133989427 133989509 -18547750 - ID4_ SINE ID 0 83 3 1 1607 1345 231 60 81 chr5 133989547 133989966 -18547293 + RMER15 LTR ERVL 165 574 -1 1 1607 838 254 22 18 chr5 133989966 133990194 -18547065 - ERVL-int LTR ERVL -961 4796 4568 1 1607 575 326 41 21 chr5 133990195 133990389 -18546870 - B4A SINE B4 -91 201 4 1 1607 1379 259 29 24 chr5 133990396 133990772 -18546487 - ERVL-int LTR ERVL -2411 3346 2969 1 1607 1200 251 45 42 chr5 133990819 133991177 -18546082 - ORR1E LTR MaLR 0 359 1 1 1607 234 128 0 0 chr5 133991258 133991297 -18545962 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1607 499 258 102 0 chr5 133991297 133991425 -18545834 - B3A SINE B2 -50 148 8 1 1607 593 265 119 21 chr5 133992291 133992484 -18544775 + ID_B1 SINE B4 2 213 -11 1 1607 711 112 0 0 chr5 133992490 133992597 -18544662 + (TAGA)n Simple_repeat Simple_repeat 2 108 0 1 1607 827 333 4 26 chr5 133992674 133992939 -18544320 + B4 SINE B4 11 269 -23 1 1607 431 18 0 18 chr5 133992939 133992996 -18544263 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1607 530 261 31 0 chr5 133993841 133993971 -18543288 - MTD LTR MaLR -14 405 272 1 1607 559 256 0 16 chr5 133993959 133994086 -18543173 - B3 SINE B2 -75 141 17 1 1607 522 290 42 26 chr5 133994088 133994279 -18542980 - MTD LTR MaLR -208 211 18 1 1607 184 329 53 0 chr5 133994432 133994508 -18542751 + L2c LINE L2 3212 3291 -96 1 1607 23 0 0 0 chr5 133994563 133994586 -18542673 + AT_rich Low_complexity Low_complexity 1 23 0 1 1607 472 363 0 0 chr5 133994728 133994885 -18542374 + (CA)n Simple_repeat Simple_repeat 2 158 0 1 1607 1065 270 58 33 chr5 133994930 133995325 -18541934 - L1MA6 LINE L1 -396 5904 5500 1 1607 297 0 0 0 chr5 133996158 133996191 -18541068 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1607 1408 92 0 14 chr5 133996194 133996404 -18540855 - L1_Mus4 LINE L1 -4 6632 6426 1 1607 674 76 0 0 chr5 133996404 133996496 -18540763 + L1_Mm LINE L1 3926 4017 -1866 1 1607 28 0 0 0 chr5 133996630 133996658 -18540601 + AT_rich Low_complexity Low_complexity 1 28 0 1 1607 461 315 8 0 chr5 133996665 133996795 -18540464 - RSINE1 SINE B4 0 165 35 1 1607 332 323 0 0 chr5 133997127 133997260 -18539999 - Lx8 LINE L1 -1554 5919 5787 1 1607 260 197 16 0 chr5 133997258 133997319 -18539940 + L1M3 LINE L1 5547 5608 -683 1 1607 2730 130 9 17 chr5 133997333 133997582 -18539677 - Lx2A1 LINE L1 -991 6017 5765 1 1607 5276 129 91 6 chr5 133997582 133998465 -18538794 - RMER17B LTR ERVK 0 958 1 1 1607 2730 130 9 17 chr5 133998465 133998637 -18538622 - Lx2A1 LINE L1 -1244 5764 5599 1 1607 2717 148 13 24 chr5 133998638 133999103 -18538156 + Lx2B LINE L1 6541 7000 0 1 1607 285 196 0 0 chr5 133999105 133999156 -18538103 + L1M3 LINE L1 5602 5652 -516 1 1607 259 250 46 15 chr5 133999136 133999201 -18538058 + Lx9 LINE L1 5636 5702 -1942 1 1607 339 322 162 11 chr5 133999750 133999935 -18537324 + B4A SINE B4 1 213 -79 1 1607 524 15 15 0 chr5 133999935 134000000 -18537259 + (GAAA)n Simple_repeat Simple_repeat 4 69 0 1 1607 333 0 0 0 chr5 134000014 134000051 -18537208 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 1 1607 979 135 11 6 chr5 134000052 134000231 -18537028 + GA-rich Low_complexity Low_complexity 1 180 0 2 1607 256 321 16 41 chr5 134000751 134000897 -18536362 + B4 SINE B4 10 144 -148 3 1607 204 254 17 17 chr5 134000899 134000959 -18536300 + GA-rich Low_complexity Low_complexity 5 64 0 4 1607 593 324 6 0 chr5 134001677 134001856 -18535403 - B4A SINE B4 -112 180 1 5 1607 195 419 29 17 chr5 134001892 134002067 -18535192 - MIRb SINE MIR -89 179 3 6 1607 762 127 14 7 chr5 134002244 134002365 -18534894 + (GA)n Simple_repeat Simple_repeat 1 121 0 7 1607 1039 73 0 13 chr5 134002365 134002517 -18534742 + (GGAAA)n Simple_repeat Simple_repeat 4 153 0 8 1607 762 127 14 7 chr5 134002517 134002538 -18534721 + (GA)n Simple_repeat Simple_repeat 2 23 0 9 1607 195 325 25 0 chr5 134002638 134002718 -18534541 + MIR SINE MIR 37 118 -90 1 1607 181 240 40 0 chr5 134002879 134002929 -18534330 - L3 LINE CR1 -1068 3421 3370 1 1607 691 171 23 8 chr5 134003000 134003130 -18534129 + B1_Mur3 SINE Alu 18 149 0 1 1607 302 279 0 0 chr5 134004546 134004614 -18532645 + B4A SINE B4 10 77 -215 1 1607 596 243 75 6 chr5 134004640 134004814 -18532445 - RMER15 LTR ERVL -110 465 280 1 1607 234 299 50 81 chr5 134004820 134004980 -18532279 - RMER15 LTR ERVL -418 157 3 1 1607 450 221 69 16 chr5 134005077 134005246 -18532013 - L1MB7 LINE L1 -345 5829 5655 1 1607 262 289 26 0 chr5 134005259 134005335 -18531924 - MTE2a LTR MaLR -62 317 240 1 1607 445 326 15 58 chr5 134005686 134005946 -18531313 - RLTR26 LTR ERVK -225 417 169 1 1607 241 331 201 0 chr5 134006173 134006312 -18530947 + Charlie12 DNA MER1_type 7 173 -2700 1 1607 565 246 15 7 chr5 134006843 134006978 -18530281 - B3A SINE B2 -62 136 1 1 1607 382 256 86 0 chr5 134007325 134007442 -18529817 + RMER15 LTR ERVL 1 127 -448 2 1607 246 320 8 31 chr5 134007474 134007603 -18529656 + RMER15 LTR ERVL 274 399 -176 2 1607 229 232 0 19 chr5 134008088 134008204 -18529055 + (TTCA)n Simple_repeat Simple_repeat 1 113 0 2 1607 272 148 58 58 chr5 134009082 134009168 -18528091 + Lx4B LINE L1 6972 7057 -1 2 1607 729 293 44 24 chr5 134009313 134009607 -18527652 - RMER15 LTR ERVL 0 575 276 2 1607 258 261 22 11 chr5 134010088 134010177 -18527082 + MTEa LTR MaLR 290 379 0 2 1607 486 304 10 20 chr5 134010472 134010667 -18526592 - B3A SINE B2 -1 197 5 2 1607 1204 246 85 24 chr5 134011243 134011636 -18525623 - MTD LTR MaLR -15 404 1 2 1607 283 176 87 14 chr5 134012053 134012122 -18525137 - MTE2a LTR MaLR -130 249 176 2 1607 345 323 7 28 chr5 134012197 134012485 -18524774 + (TATATG)n Simple_repeat Simple_repeat 1 281 0 2 1607 325 354 6 0 chr5 134012454 134012712 -18524547 + (TA)n Simple_repeat Simple_repeat 1 259 0 2 1607 246 361 17 11 chr5 134012607 134012786 -18524473 + (TATG)n Simple_repeat Simple_repeat 1 180 0 3 1607 500 332 76 34 chr5 134012800 134013062 -18524197 - B4 SINE B4 -18 274 2 3 1607 434 61 15 0 chr5 134013121 134013187 -18524072 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 3 1607 1200 43 0 0 chr5 134013187 134013326 -18523933 - B1_Mus1 SINE Alu -9 139 1 3 1607 339 239 0 114 chr5 134013362 134013485 -18523774 - B3A SINE B2 0 198 90 3 1607 289 169 0 123 chr5 134014050 134014131 -18523128 + Charlie12 DNA MER1_type 2803 2873 0 1 1607 319 300 120 50 chr5 134014313 134014513 -18522746 + ID_B1 SINE B4 4 217 -7 3 1607 544 306 88 19 chr5 134014554 134014761 -18522498 + B4A SINE B4 2 213 -79 3 1607 938 48 0 8 chr5 134014761 134014886 -18522373 + (GAA)n Simple_repeat Simple_repeat 1 124 0 3 1607 544 306 88 19 chr5 134014886 134014941 -18522318 + B4A SINE B4 214 281 -11 3 1607 369 131 0 0 chr5 134014968 134015029 -18522230 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 1607 931 295 20 76 chr5 134015734 134016090 -18521169 + Lx8 LINE L1 7053 7388 -85 3 1607 23 0 0 0 chr5 134016108 134016131 -18521128 + AT_rich Low_complexity Low_complexity 1 23 0 4 1607 705 56 0 0 chr5 134016149 134016239 -18521020 + (TA)n Simple_repeat Simple_repeat 1 90 0 4 1607 417 220 66 0 chr5 134016610 134016701 -18520558 + Lx8 LINE L1 6594 6690 -783 4 1607 223 328 0 0 chr5 134016884 134016948 -18520311 + ID4 SINE ID 1 64 -19 4 1607 1913 123 24 83 chr5 134017056 134017428 -18519831 + ORR1B1 LTR MaLR 41 390 -4 4 1607 272 292 30 37 chr5 134017639 134017774 -18519485 + RMER15 LTR ERVL 347 480 -95 4 1607 414 0 0 0 chr5 134017796 134017842 -18519417 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1607 233 350 10 0 chr5 134017944 134018047 -18519212 + RMER15 LTR ERVL 467 570 -5 4 1607 1775 108 65 95 chr5 134018052 134018389 -18518870 - ORR1A4 LTR MaLR -2 327 1 4 1607 388 258 0 31 chr5 134018988 134019084 -18518175 + B4A SINE B4 4 96 -196 4 1607 923 234 9 53 chr5 134019086 134019312 -18517947 + B3 SINE B2 1 216 0 4 1607 324 253 0 39 chr5 134019316 134019329 -18517930 + B4A SINE B4 212 223 -69 4 1607 396 0 0 0 chr5 134019329 134019373 -18517886 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1607 324 253 0 39 chr5 134019373 134019437 -18517822 + B4A SINE B4 224 286 -6 4 1607 379 264 0 0 chr5 134019578 134019669 -18517590 - B3A SINE B2 -7 191 101 5 1607 430 283 0 9 chr5 134019686 134019793 -18517466 - MTEa LTR MaLR -37 342 237 5 1607 695 144 8 0 chr5 134019852 134019977 -18517282 + GA-rich Low_complexity Low_complexity 3 128 0 5 1607 331 346 10 0 chr5 134020041 134020142 -18517117 - PB1D10 SINE Alu -9 108 7 5 1607 220 184 0 0 chr5 134020812 134020850 -18516409 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 5 1607 398 204 9 0 chr5 134020851 134020959 -18516300 + (TG)n Simple_repeat Simple_repeat 2 110 0 5 1607 576 326 71 39 chr5 134020982 134021350 -18515909 - MTE2a LTR MaLR -14 405 21 5 1607 757 331 12 20 chr5 134021374 134021624 -18515635 - B4 SINE B4 -43 249 2 5 1607 277 150 0 0 chr5 134021770 134021810 -18515449 + tRNA-Lys-AAG tRNA tRNA 37 76 0 5 1607 1978 244 54 36 chr5 134021812 134022390 -18514869 - RLTR17 LTR ERVK 0 692 105 6 1607 1153 237 114 15 chr5 134022476 134022819 -18514440 - MTEa LTR MaLR 0 379 3 6 1607 258 279 99 15 chr5 134022829 134022960 -18514299 - MLT1G3 LTR MaLR -300 295 154 6 1607 708 237 7 0 chr5 134022984 134023123 -18514136 + ID_B1 SINE B4 81 220 -4 6 1607 23 0 0 0 chr5 134023205 134023228 -18514031 + AT_rich Low_complexity Low_complexity 1 23 0 6 1607 583 310 64 27 chr5 134023365 134023659 -18513600 + ORR1E LTR MaLR 1 337 -42 6 1607 392 294 10 10 chr5 134024018 134024121 -18513138 + ZP3AR Satellite Satellite 40 142 -70 6 1607 512 248 88 0 chr5 134024119 134024244 -18513015 - B3 SINE B2 -80 136 1 6 1607 701 274 59 0 chr5 134024615 134024819 -18512440 + ID_B1 SINE B4 3 218 -6 6 1607 670 256 98 10 chr5 134025188 134025393 -18511866 + B4 SINE B4 5 227 -65 6 1607 1855 180 20 3 chr5 134025401 134025757 -18511502 - ORR1B2 LTR MaLR 0 367 6 7 1607 742 289 24 14 chr5 134026067 134026278 -18510981 + B4 SINE B4 2 214 -78 7 1607 950 272 89 11 chr5 134026308 134026765 -18510494 - Lx8 LINE L1 -10 7463 6950 7 1607 363 289 10 0 chr5 134026780 134026877 -18510382 + B4A SINE B4 185 282 -10 7 1607 545 304 15 21 chr5 134027977 134028236 -18509023 + B4A SINE B4 2 292 0 7 1607 225 132 0 0 chr5 134028378 134028416 -18508843 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1607 277 248 22 11 chr5 134028437 134028623 -18508636 + (CA)n Simple_repeat Simple_repeat 1 188 0 7 1607 387 0 0 0 chr5 134028749 134028792 -18508467 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1607 340 276 11 39 chr5 134028824 134029005 -18508254 + (CA)n Simple_repeat Simple_repeat 1 176 0 7 1607 414 0 0 0 chr5 134029019 134029065 -18508194 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1607 211 241 17 17 chr5 134029067 134029126 -18508133 - B3A SINE B2 -139 59 1 7 1607 607 138 0 24 chr5 134029308 134029434 -18507825 + GA-rich Low_complexity Low_complexity 2 124 0 7 1607 892 258 22 27 chr5 134029485 134029708 -18507551 - ID_B1 SINE B4 -1 223 2 7 1607 1047 201 5 14 chr5 134029752 134029959 -18507300 + B3 SINE B2 9 213 -3 7 1607 423 0 0 0 chr5 134030408 134030455 -18506804 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1607 652 247 29 35 chr5 134030455 134030627 -18506632 - B4A SINE B4 -23 269 99 8 1607 550 211 0 9 chr5 134030654 134030759 -18506500 - B1F SINE Alu -6 143 40 8 1607 499 264 47 7 chr5 134030759 134030902 -18506357 + B3A SINE B2 61 202 -14 8 1607 354 123 0 0 chr5 134030905 134030962 -18506297 + (CA)n Simple_repeat Simple_repeat 1 57 0 8 1607 962 101 14 0 chr5 134030988 134031136 -18506123 + (GGAA)n Simple_repeat Simple_repeat 3 152 0 8 1607 883 299 37 54 chr5 134031258 134031552 -18505707 + B4 SINE B4 2 290 -2 8 1607 297 75 0 0 chr5 134032109 134032149 -18505110 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1607 709 201 117 5 chr5 134032511 134032710 -18504549 - ORR1D2 LTR MaLR -158 216 1 8 1607 407 172 0 20 chr5 134032731 134032832 -18504427 + (TCTG)n Simple_repeat Simple_repeat 2 100 0 8 1607 589 314 58 14 chr5 134033200 134033475 -18503784 - B4A SINE B4 -4 288 2 9 1607 22 0 0 0 chr5 134033927 134033949 -18503310 + AT_rich Low_complexity Low_complexity 1 22 0 9 1607 245 359 12 25 chr5 134034169 134034249 -18503010 - RSINE1 SINE B4 0 165 87 9 1607 213 310 0 48 chr5 134034553 134034658 -18502601 + MIR3 SINE MIR 108 207 -1 9 1607 417 304 15 7 chr5 134034723 134034859 -18502400 - B1F2 SINE Alu -8 141 5 9 1607 1214 154 10 38 chr5 134035034 134035409 -18501850 - ZP3AR Satellite Satellite -21 364 1 9 1607 309 350 0 0 chr5 134035559 134035679 -18501580 + ID_B1 SINE B4 105 224 0 9 1607 36152 35 0 0 chr5 134035716 134041372 -18495887 + L1Md_T LINE L1 1 5589 -297 9 1607 9118 6 0 4 chr5 134041372 134042372 -18494887 + L1Md_T LINE L1 5590 6585 0 9 1607 689 289 98 18 chr5 134043058 134043505 -18493754 + RMER15 LTR ERVL 3 575 0 9 1607 1431 141 23 0 chr5 134044492 134044712 -18492547 + URR1B DNA MER1_type 1 225 0 9 1607 262 318 34 0 chr5 134044820 134044908 -18492351 + RMER30 DNA MER1_type 1 91 -111 1 1607 495 314 12 77 chr5 134045039 134045208 -18492051 - B4 SINE B4 -47 245 88 1 1607 911 235 278 28 chr5 134045209 134045669 -18491590 - RMER15 LTR ERVL 0 575 1 1 1607 810 267 52 5 chr5 134046099 134046308 -18490951 + B4 SINE B4 88 292 0 1 1607 526 277 76 35 chr5 134046352 134046524 -18490735 + B3A SINE B2 19 197 -1 1 1607 360 148 0 0 chr5 134046601 134046662 -18490597 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1607 360 0 0 0 chr5 134046703 134046743 -18490516 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1607 195 42 0 0 chr5 134046744 134046768 -18490491 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1607 519 261 22 30 chr5 134047606 134047740 -18489519 + B1F SINE Alu 5 137 -12 1 1607 585 0 0 0 chr5 134047740 134047805 -18489454 + (TAAAA)n Simple_repeat Simple_repeat 2 66 0 1 1607 205 275 21 14 chr5 134047846 134047996 -18489263 + GA-rich Low_complexity Low_complexity 1 151 0 1 1607 576 337 51 25 chr5 134048677 134049033 -18488226 - RMER5 LTR ERV1 -14 520 156 1 1607 473 303 45 0 chr5 134049059 134049191 -18488068 + RSINE1 SINE B4 11 148 -17 1 1607 22 0 0 0 chr5 134049203 134049225 -18488034 + AT_rich Low_complexity Low_complexity 1 22 0 1 1607 1078 289 53 58 chr5 134049624 134050003 -18487256 + MTEa LTR MaLR 1 377 -2 1 1607 650 328 6 0 chr5 134050117 134050291 -18486968 + B3A SINE B2 7 181 -17 1 1607 360 0 0 0 chr5 134050294 134050334 -18486925 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1607 484 280 51 0 chr5 134050334 134050443 -18486816 + B4 SINE B4 97 211 -81 1 1607 219 88 0 0 chr5 134050444 134050478 -18486781 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1607 455 326 0 29 chr5 134050502 134050641 -18486618 + RSINE1 SINE B4 12 146 -19 1 1607 243 0 0 0 chr5 134050647 134050674 -18486585 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1 1607 318 87 0 0 chr5 134050755 134050801 -18486458 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1607 189 288 25 76 chr5 134050981 134051060 -18486199 + L2c LINE L2 3250 3324 -63 1 1607 486 33 0 0 chr5 134051232 134051292 -18485967 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1607 389 279 95 7 chr5 134051559 134051707 -18485552 + Ricksha_c DNA MuDR 513 673 -1375 1 1607 614 244 172 18 chr5 134051710 134051931 -18485328 + MTE2a LTR MaLR 123 377 -2 1 1607 220 288 27 14 chr5 134052933 134053007 -18484252 + PB1D10 SINE Alu 22 96 -21 1 1607 1489 67 2 0 chr5 134053016 134053266 -18483993 + ZP3AR Satellite Satellite 1 250 0 1 1607 825 250 67 5 chr5 134053276 134053469 -18483790 - B4 SINE B4 -87 205 1 1 1607 316 308 86 9 chr5 134053812 134053917 -18483342 - B1F2 SINE Alu -33 116 4 1 1607 721 249 165 14 chr5 134053923 134054135 -18483124 + ORR1E LTR MaLR 6 249 -110 1 1607 795 57 0 0 chr5 134054286 134054391 -18482868 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 1 1607 277 264 43 78 chr5 134055112 134055227 -18482032 + RMER15 LTR ERVL 425 535 -40 1 1607 186 259 55 18 chr5 134055266 134055321 -18481938 + MER5B DNA MER1_type 89 145 -33 1 1607 245 295 92 26 chr5 134056082 134056235 -18481024 - MIRb SINE MIR -6 262 100 1 1607 914 289 101 0 chr5 134056511 134056729 -18480530 + B4 SINE B4 24 263 -29 1 1607 468 0 0 0 chr5 134056780 134056832 -18480427 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1607 2023 161 45 52 chr5 134056842 134057223 -18480036 + ORR1C1 LTR MaLR 1 378 0 1 1607 231 298 54 125 chr5 134057342 134057526 -18479733 - MTEb LTR MaLR -8 371 201 1 1607 710 260 140 113 chr5 134057558 134057922 -18479337 + MTD LTR MaLR 6 379 0 1 1607 281 292 179 21 chr5 134058203 134058343 -18478916 + B3A SINE B2 11 172 -26 1 1607 5228 75 3 9 chr5 134058444 134059145 -18478114 - L1_Mus4 LINE L1 0 6636 5940 1 1607 384 22 0 0 chr5 134059265 134059310 -18477949 + (TTG)n Simple_repeat Simple_repeat 1 45 0 1 1607 399 240 0 0 chr5 134059310 134059385 -18477874 - ID4 SINE ID -8 75 1 1 1607 1330 107 3 3 chr5 134059385 134059598 -18477661 - ZP3AR Satellite Satellite -11 213 1 1 1607 306 0 0 0 chr5 134059739 134059773 -18477486 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1 1607 4410 166 61 22 chr5 134059914 134060771 -18476488 - RMER19B LTR ERVK -12 890 1 1 1607 185 65 32 0 chr5 134061491 134061522 -18475737 + (GGGAA)n Simple_repeat Simple_repeat 3 34 0 1 1607 855 294 56 8 chr5 134061709 134061976 -18475283 + B4 SINE B4 4 283 -9 1 1607 300 53 0 0 chr5 134061995 134062033 -18475226 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1607 510 267 31 1 chr5 134062043 134062186 -18475073 + B1F SINE Alu 3 148 -1 1 1607 267 287 35 0 chr5 134062567 134062654 -18474605 - Cheshire DNA MER1_type -2165 255 166 1 1607 248 0 31 0 chr5 134062727 134062759 -18474500 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1607 296 222 63 0 chr5 134062765 134062828 -18474431 + ID4_ SINE ID 3 69 -14 1 1607 300 53 0 0 chr5 134062844 134062882 -18474377 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 1 1607 283 207 0 17 chr5 134062918 134062977 -18474282 + B1_Mus1 SINE Alu 4 61 -87 1 1607 365 185 0 17 chr5 134062977 134062993 -18474266 + ID_B1 SINE B4 103 157 -67 1 1607 259 192 0 0 chr5 134062993 134063045 -18474214 + B3A SINE B2 2 53 -145 1 1607 424 200 0 0 chr5 134063157 134063227 -18474032 + ID_B1 SINE B4 145 214 -10 1 1607 243 88 0 0 chr5 134063228 134063262 -18473997 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1 1607 1003 245 189 12 chr5 134064039 134064361 -18472898 + MTEa LTR MaLR 1 379 0 1 1607 405 293 81 40 chr5 134064423 134064597 -18472662 - B3A SINE B2 -16 182 2 1 1607 1237 225 12 8 chr5 134065296 134065692 -18471567 + ZP3AR Satellite Satellite 1 397 -1 1 1607 21 0 0 0 chr5 134065759 134065780 -18471479 + AT_rich Low_complexity Low_complexity 1 21 0 1 1607 321 320 69 10 chr5 134066050 134066151 -18471108 + PB1D7 SINE Alu 10 116 -4 1 1607 945 271 9 0 chr5 134066450 134066671 -18470588 - ID_B1 SINE B4 0 224 2 1 1607 563 298 38 12 chr5 134066698 134066858 -18470401 - RSINE1 SINE B4 0 165 2 1 1607 2109 124 17 22 chr5 134067032 134067388 -18469871 + ORR1B1 LTR MaLR 41 394 0 1 1607 275 312 53 46 chr5 134067402 134067533 -18469726 + MLT1A LTR MaLR 16 147 -227 1 1607 985 223 104 8 chr5 134067978 134068227 -18469032 + B4A SINE B4 2 274 -18 1 1607 492 18 0 0 chr5 134068251 134068308 -18468951 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1607 181 271 92 23 chr5 134068528 134068615 -18468644 + MIR SINE MIR 151 243 -19 1 1607 324 272 37 12 chr5 134069052 134069134 -18468125 + B4 SINE B4 40 123 -169 1 1607 1006 95 77 0 chr5 134069143 134069311 -18467948 - ORR1B2 LTR MaLR -2 365 185 1 1607 317 24 0 23 chr5 134069312 134069355 -18467904 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 1 1607 783 190 0 7 chr5 134069355 134069493 -18467766 - B1_Mur4 SINE Alu -11 139 3 1 1607 1025 159 36 16 chr5 134069495 134069687 -18467572 - ORR1B2 LTR MaLR -171 196 1 1 1607 270 309 73 97 chr5 134069698 134069863 -18467396 + B4 SINE B4 125 285 -7 1 1607 351 0 0 0 chr5 134069873 134069912 -18467347 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1607 1288 164 56 0 chr5 134070014 134070228 -18467031 - URR1A DNA MER1_type 0 226 1 1 1607 615 258 19 0 chr5 134070614 134070769 -18466490 + ID_B1 SINE B4 10 167 -57 1 1607 276 240 26 13 chr5 134070769 134070845 -18466414 - B4 SINE B4 -215 77 1 1 1607 659 65 11 0 chr5 134071371 134071464 -18465795 + (GA)n Simple_repeat Simple_repeat 2 95 0 1 1607 397 226 14 76 chr5 134071489 134071553 -18465706 + L1MA4 LINE L1 5770 5828 -472 1 1607 964 192 231 29 chr5 134071553 134071864 -18465395 - ORR1D1 LTR MaLR 0 374 1 1 1607 397 226 14 76 chr5 134071864 134071943 -18465316 + L1MA4 LINE L1 5829 5904 -396 1 1607 4227 131 28 6 chr5 134071975 134072699 -18464560 - RMER6A LTR ERVK -16 740 1 1 1607 1730 199 34 44 chr5 134072949 134073332 -18463927 - MTEb LTR MaLR 0 379 1 1 1607 227 294 0 0 chr5 134073502 134073553 -18463706 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 1 1607 230 328 44 9 chr5 134073553 134073667 -18463592 + L1M5 LINE L1 5522 5639 -601 1 1607 625 253 13 7 chr5 134073668 134073819 -18463440 + B3A SINE B2 11 162 -36 1 1607 321 47 0 0 chr5 134073826 134073869 -18463390 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1607 258 310 59 50 chr5 134073879 134073954 -18463305 + B4A SINE B4 27 108 -184 1 1607 1221 191 79 138 chr5 134073954 134074360 -18462899 + ORR1C2 LTR MaLR 3 384 0 1 1607 258 310 59 50 chr5 134074360 134074403 -18462856 + B4A SINE B4 109 146 -146 1 1607 588 180 14 72 chr5 134074444 134074582 -18462677 + B1F SINE Alu 19 148 -1 1 1607 1064 210 177 12 chr5 134074611 134074944 -18462315 + MTD LTR MaLR 18 405 -14 1 1607 1395 205 19 16 chr5 134074981 134075298 -18461961 + ORR1B2 LTR MaLR 1 318 -49 1 1607 279 0 0 0 chr5 134075509 134075540 -18461719 + (CTG)n Simple_repeat Simple_repeat 2 32 0 1 1607 533 138 11 0 chr5 134075538 134075632 -18461627 + (TCC)n Simple_repeat Simple_repeat 3 97 0 1 1607 932 207 62 0 chr5 134075899 134076092 -18461167 + ID_B1 SINE B4 2 206 -18 1 1607 762 223 0 68 chr5 134076575 134076767 -18460492 + B3A SINE B2 2 180 -18 1 1607 330 214 10 82 chr5 134077530 134077627 -18459632 + PB1D10 SINE Alu 1 90 -27 1 1607 866 244 51 58 chr5 134077660 134077934 -18459325 + B4A SINE B4 1 272 -20 1 1607 369 0 0 0 chr5 134077944 134077985 -18459274 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1607 599 185 163 7 chr5 134078120 134078267 -18458992 - B3A SINE B2 -27 171 2 2 1607 432 267 59 0 chr5 134078740 134078875 -18458384 - B3A SINE B2 -55 143 1 2 1607 587 314 68 8 chr5 134079153 134079403 -18457856 - Lx8 LINE L1 -301 7172 6908 2 1607 643 155 0 0 chr5 134079577 134079693 -18457566 - RSINE1 SINE B4 -47 118 3 2 1607 1023 274 109 30 chr5 134079803 134080297 -18456962 + MT2A LTR ERVL 1 533 0 2 1607 182 280 26 26 chr5 134081326 134081403 -18455856 + MIRc SINE MIR 170 246 -22 2 1607 342 0 0 0 chr5 134081695 134081733 -18455526 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2 1607 246 81 0 0 chr5 134081734 134081771 -18455488 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1607 580 220 0 8 chr5 134081771 134081890 -18455369 - RSINE1 SINE B4 -45 120 3 2 1607 576 283 52 0 chr5 134082272 134082445 -18454814 + B3A SINE B2 1 182 -16 2 1607 351 89 0 0 chr5 134082445 134082501 -18454758 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1607 519 317 76 53 chr5 134082578 134082930 -18454329 + ORR1E LTR MaLR 8 379 0 2 1607 1219 228 17 124 chr5 134082959 134083379 -18453880 + MTE2a LTR MaLR 1 375 -4 2 1607 608 264 6 88 chr5 134083699 134083869 -18453390 - B3A SINE B2 -39 159 4 2 1607 555 235 8 8 chr5 134083914 134084034 -18453225 + PB1D9 SINE Alu 1 120 0 2 1607 754 271 106 12 chr5 134084361 134084615 -18452644 - B4A SINE B4 0 292 15 2 1607 360 0 0 0 chr5 134084654 134084694 -18452565 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1607 295 380 8 15 chr5 134084723 134084854 -18452405 + Tigger7 DNA MER2_type 16 145 -2346 2 1607 1160 168 5 5 chr5 134084865 134085074 -18452185 + MTC LTR MaLR 99 307 -114 2 1607 2187 87 22 0 chr5 134085153 134085465 -18451794 - ORR1A2 LTR MaLR -8 319 1 2 1607 297 275 0 24 chr5 134085506 134085588 -18451671 + Tigger7 DNA MER2_type 2413 2489 -2 2 1607 816 248 48 5 chr5 134086237 134086444 -18450815 - ID_B1 SINE B4 -8 216 1 2 1607 314 0 0 0 chr5 134086462 134086499 -18450760 - HAL1-3A_ME LINE L1 -846 2012 1976 2 200 425 157 23 23 chr5 134086531 134086661 -18450598 + (TG)n Simple_repeat Simple_repeat 2 131 0 2 1608 250 317 112 28 chr5 134087134 134087277 -18449982 + RSINE1 SINE B4 11 165 0 2 1608 414 228 25 34 chr5 134087306 134087424 -18449835 + L1MC3 LINE L1 6876 6992 -793 2 1608 730 321 109 40 chr5 134087699 134088276 -18448983 + L1MC3 LINE L1 7051 7667 -118 2 1608 375 276 20 10 chr5 134088418 134088517 -18448742 + B3A SINE B2 1 100 -98 2 1608 285 29 0 0 chr5 134088549 134088583 -18448676 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1608 464 0 0 18 chr5 134088583 134088639 -18448620 + (GA)n Simple_repeat Simple_repeat 1 56 0 2 1608 943 262 11 62 chr5 134088639 134088912 -18448347 - B4A SINE B4 -33 259 1 2 1608 473 286 23 73 chr5 134089730 134089907 -18447352 + B4A SINE B4 5 172 -120 2 1608 273 119 0 0 chr5 134090078 134090120 -18447139 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1608 23 33 0 0 chr5 134090728 134090758 -18446501 + AT_rich Low_complexity Low_complexity 1 30 0 2 1608 294 212 0 15 chr5 134090843 134090910 -18446349 - B3A SINE B2 -123 75 10 2 1608 813 49 0 0 chr5 134091395 134091497 -18445762 + (TC)n Simple_repeat Simple_repeat 2 103 0 2 1608 487 271 55 14 chr5 134091522 134091663 -18445596 + ORR1E LTR MaLR 168 314 -45 2 1608 268 237 0 0 chr5 134091663 134091722 -18445537 + RMER15 LTR ERVL 1 59 -516 2 1608 674 177 42 7 chr5 134091776 134091918 -18445341 + RMER15 LTR ERVL 429 575 0 2 1608 185 309 50 30 chr5 134093082 134093182 -18444077 + MIR SINE MIR 99 200 -62 2 1608 299 246 41 29 chr5 134093192 134093364 -18443895 + (TAGA)n Simple_repeat Simple_repeat 1 174 0 2 1608 967 293 99 27 chr5 134093828 134094270 -18442989 - MT2A LTR ERVL -3 530 57 2 1608 297 255 43 0 chr5 134094269 134094363 -18442896 - MTE2b LTR MaLR -281 98 1 2 1608 227 316 40 57 chr5 134094698 134094822 -18442437 + MLT1D LTR MaLR 363 484 -21 2 1608 598 269 162 0 chr5 134095819 134095986 -18441273 + B4 SINE B4 85 278 -14 2 1608 234 0 0 0 chr5 134096022 134096048 -18441211 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 1608 189 0 0 0 chr5 134096357 134096378 -18440881 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 1608 339 25 0 0 chr5 134096378 134096417 -18440842 + (GA)n Simple_repeat Simple_repeat 2 41 0 2 1608 269 250 105 32 chr5 134096531 134096655 -18440604 - MLT1A1 LTR MaLR -7 401 269 2 1608 1408 243 29 52 chr5 134096691 134097077 -18440182 + MTEa LTR MaLR 3 379 0 2 1608 359 196 10 115 chr5 134097428 134097532 -18439727 + PB1D10 SINE Alu 22 114 -3 2 1608 637 233 25 40 chr5 134097566 134097767 -18439492 - B3A SINE B2 0 198 1 2 1608 4174 58 7 18 chr5 134098004 134098091 -18439168 - L1_Mus3 LINE L1 0 6638 6551 2 1608 3432 25 8 0 chr5 134098091 134098484 -18438775 + MTA_Mm LTR MaLR 1 396 0 2 1608 4174 58 7 18 chr5 134098484 134098944 -18438315 - L1_Mus3 LINE L1 -88 6550 6097 2 1608 494 61 0 5 chr5 134098944 134099016 -18438243 + L1_Mus3 LINE L1 5877 5946 -636 2 1608 1187 55 7 0 chr5 134099043 134099189 -18438070 - B1_Mm SINE Alu 0 147 1 2 1608 1149 89 0 0 chr5 134099384 134099645 -18437614 + (TG)n Simple_repeat Simple_repeat 1 261 0 2 1608 564 290 7 0 chr5 134099646 134099784 -18437475 - RSINE1 SINE B4 -24 141 3 2 1608 786 302 22 15 chr5 134100699 134100971 -18436288 - RMER15 LTR ERVL -18 557 284 2 1608 226 256 79 71 chr5 134101021 134101147 -18436112 - RMER15 LTR ERVL -448 127 1 2 1608 297 259 107 12 chr5 134101157 134101286 -18435973 + MT2A LTR ERVL 406 564 -3 2 1608 531 211 16 0 chr5 134101589 134101712 -18435547 + ORR1E LTR MaLR 11 135 -224 2 1608 289 248 115 23 chr5 134101903 134102033 -18435226 + ORR1E LTR MaLR 250 379 0 2 1608 1683 16 21 0 chr5 134102375 134102564 -18434695 - B2_Mm1t SINE B2 0 193 1 2 1608 509 241 86 70 chr5 134102746 134102778 -18434481 - B2_Mm2 SINE B2 -4 191 161 2 1608 639 39 0 0 chr5 134102778 134102856 -18434403 + (TG)n Simple_repeat Simple_repeat 2 79 0 2 1608 556 241 86 70 chr5 134102856 134103010 -18434249 - B3A SINE B2 -35 160 2 2 1608 984 181 67 0 chr5 134103018 134103228 -18434031 - URR1A DNA MER1_type -2 224 1 2 1608 606 51 0 0 chr5 134103339 134103417 -18433842 + (GGGA)n Simple_repeat Simple_repeat 3 80 0 2 1608 203 211 27 27 chr5 134103723 134103796 -18433463 + A-rich Low_complexity Low_complexity 2 74 0 2 1608 217 92 75 30 chr5 134103958 134104025 -18433234 + (TA)n Simple_repeat Simple_repeat 2 71 0 2 1608 2380 152 84 16 chr5 134104338 134104827 -18432432 + RLTR11A LTR ERVK 7 528 0 2 1608 797 217 19 82 chr5 134105312 134105518 -18431741 - B3A SINE B2 -3 195 3 2 1608 341 337 0 0 chr5 134105690 134105776 -18431483 + ID_B1 SINE B4 6 91 -133 2 1608 422 281 164 0 chr5 134105777 134105905 -18431354 + RSINE1 SINE B4 2 150 -15 2 1608 264 127 0 0 chr5 134105922 134105977 -18431282 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 2 1608 602 252 8 8 chr5 134106006 134106138 -18431121 + ID_B1 SINE B4 87 218 -6 2 1608 610 292 6 6 chr5 134106185 134106347 -18430912 + B3A SINE B2 1 162 -36 2 1608 405 0 0 0 chr5 134106360 134106405 -18430854 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1608 648 264 51 1 chr5 134106429 134106601 -18430658 + B3A SINE B2 5 184 -32 2 1608 750 45 27 9 chr5 134106601 134106712 -18430547 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 2 1608 571 276 77 10 chr5 134106712 134106733 -18430526 + B3 SINE B2 185 210 -6 2 1608 265 132 73 36 chr5 134107668 134107723 -18429536 + tRNA-Ala-GCA tRNA tRNA 2 58 -17 2 1608 1748 168 94 0 chr5 134107799 134108150 -18429109 + ORR1C2 LTR MaLR 1 384 0 2 1608 480 128 0 0 chr5 134108176 134108254 -18429005 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 2 1608 3056 20 3 0 chr5 134108947 134109292 -18427967 - ORR1A0 LTR MaLR 0 346 1 2 1608 332 292 50 71 chr5 134109302 134109442 -18427817 + ID_B1 SINE B4 1 137 -87 2 1608 1274 235 78 27 chr5 134109647 134110089 -18427170 + RMER19C LTR ERVK 138 901 -1 2 1608 287 229 0 16 chr5 134110095 134110157 -18427102 + ID_B1 SINE B4 155 215 -9 2 1608 235 24 95 0 chr5 134110219 134110261 -18426998 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2 1608 538 237 47 78 chr5 134110681 134110873 -18426386 + L1M3 LINE L1 5487 5672 -496 2 1608 936 139 134 0 chr5 134111097 134111269 -18425990 + URR1A DNA MER1_type 2 196 -30 2 1608 297 277 50 21 chr5 134111152 134111292 -18425967 - CYRA11_Mm Unknown Y-chromosome -297 320 177 2 1608 280 244 62 25 chr5 134111356 134111436 -18425823 + RSINE1 SINE B4 11 93 -72 2 1608 215 61 30 0 chr5 134111437 134111470 -18425789 + (AGGGGG)n Simple_repeat Simple_repeat 3 36 0 2 1608 474 75 0 0 chr5 134111658 134111725 -18425534 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1608 203 0 37 0 chr5 134111823 134111850 -18425409 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 2 1608 362 291 8 23 chr5 134111855 134111985 -18425274 - Lx4B LINE L1 -5 7053 6926 2 1608 2320 177 5 5 chr5 134111990 134112411 -18424848 - Lx4B LINE L1 -307 6751 6331 2 1608 585 295 0 0 chr5 134113930 134114059 -18423200 - RSINE1 SINE B4 -32 133 5 2 1608 277 250 76 32 chr5 134114141 134114235 -18423024 - PB1D10 SINE Alu -31 86 2 2 1608 429 217 0 0 chr5 134114285 134114368 -18422891 + ID4 SINE ID 1 83 0 2 1608 369 0 0 0 chr5 134114463 134114504 -18422755 + (ATG)n Simple_repeat Simple_repeat 3 43 0 2 1608 860 138 6 18 chr5 134114506 134114676 -18422583 + GA-rich Low_complexity Low_complexity 1 168 0 2 1608 667 93 59 7 chr5 134114672 134114824 -18422435 + (TAGA)n Simple_repeat Simple_repeat 2 161 0 2 1608 414 0 0 0 chr5 134114843 134114889 -18422370 + (CATA)n Simple_repeat Simple_repeat 2 47 0 2 1608 267 224 52 96 chr5 134116018 134116133 -18421126 + RSINE1 SINE B4 82 274 -18 2 1608 908 249 68 38 chr5 134116694 134116957 -18420302 + B4A SINE B4 5 275 -17 2 1608 330 26 0 0 chr5 134116982 134117021 -18420238 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1608 304 309 66 12 chr5 134117901 134118068 -18419191 + MLT2B4 LTR ERVL 8 183 -373 2 1608 495 0 0 0 chr5 134118077 134118132 -18419127 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 2 1608 693 107 10 92 chr5 134118357 134118553 -18418706 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 3 1608 250 217 29 0 chr5 134118658 134118727 -18418532 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 3 1608 216 0 0 0 chr5 134119985 134120009 -18417250 + (T)n Simple_repeat Simple_repeat 1 24 0 3 1608 545 275 33 57 chr5 134120016 134120228 -18417031 - RMER15 LTR ERVL -24 551 345 3 1608 593 261 77 43 chr5 134120444 134120652 -18416607 - B3A SINE B2 -1 215 1 3 1608 1007 311 18 21 chr5 134121076 134121362 -18415897 + B4 SINE B4 8 292 0 3 1608 354 80 0 0 chr5 134121392 134121442 -18415817 + (CA)n Simple_repeat Simple_repeat 1 50 0 3 1608 1607 253 57 51 chr5 134122325 134122834 -18414425 + Lx5 LINE L1 5852 6363 -687 3 1608 722 237 63 87 chr5 134122831 134123085 -18414174 + Lx5 LINE L1 6479 6726 -324 3 1608 402 21 0 0 chr5 134123328 134123375 -18413884 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1608 606 240 26 46 chr5 134123402 134123555 -18413704 - B3A SINE B2 -48 150 1 3 1608 7041 206 68 23 chr5 134123731 134124353 -18412906 + Lx7 LINE L1 6061 6721 -975 3 1608 366 23 0 0 chr5 134124353 134124396 -18412863 + (CATA)n Simple_repeat Simple_repeat 2 44 0 3 1608 7041 209 65 30 chr5 134124396 134125377 -18411882 + Lx7 LINE L1 6722 7673 -23 3 1608 394 373 71 9 chr5 134125651 134125862 -18411397 + B4A SINE B4 69 292 0 3 1608 414 121 0 0 chr5 134125948 134126014 -18411245 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 1608 321 292 111 72 chr5 134126792 134127054 -18410205 - B4A SINE B4 -18 274 3 3 1608 932 299 27 4 chr5 134127322 134127584 -18409675 + B4A SINE B4 2 269 -23 3 1608 458 75 15 0 chr5 134127600 134127667 -18409592 + (CATA)n Simple_repeat Simple_repeat 4 71 0 3 1608 869 272 115 29 chr5 134128122 134128477 -18408782 + MTD LTR MaLR 18 405 -14 3 1608 372 59 0 0 chr5 134128770 134128821 -18408438 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1608 1068 220 102 4 chr5 134129981 134130242 -18407017 + ORR1D2 LTR MaLR 1 287 -83 3 1608 926 167 128 25 chr5 134130242 134130445 -18406814 - URR1A DNA MER1_type 0 226 3 3 1608 542 176 0 0 chr5 134130447 134130538 -18406721 + ORR1D2 LTR MaLR 280 370 0 3 1608 1868 194 24 53 chr5 134130934 134131442 -18405817 + RLTR26 LTR ERVK 2 535 -107 3 1608 655 171 14 35 chr5 134131449 134131594 -18405665 + RLTR26 LTR ERVK 501 642 0 3 1608 239 307 47 56 chr5 134131952 134132059 -18405200 - MLT1G1 LTR MaLR -407 172 67 3 1608 1179 48 0 20 chr5 134132136 134132286 -18404973 + B1_Mus2 SINE Alu 1 147 0 3 1608 186 43 0 0 chr5 134132286 134132309 -18404950 + (A)n Simple_repeat Simple_repeat 1 23 0 3 1608 429 20 0 0 chr5 134132329 134132379 -18404880 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1608 198 0 0 0 chr5 134132530 134132552 -18404707 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 3 1608 235 357 17 25 chr5 134133022 134133140 -18404119 - MLT1A0 LTR MaLR -221 144 28 3 1608 1323 137 6 19 chr5 134133328 134133560 -18403699 - ZP3AR Satellite Satellite -149 228 1 3 1608 802 304 55 35 chr5 134133574 134134025 -18403234 - L1ME4a LINE L1 -252 5872 5413 3 1608 657 271 5 47 chr5 134134113 134134137 -18403122 - B3A SINE B2 -16 182 165 3 1608 1197 106 0 0 chr5 134134137 134134317 -18402942 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1608 657 271 5 47 chr5 134134317 134134482 -18402777 - B3A SINE B2 -34 164 1 3 1608 313 194 194 0 chr5 134134494 134134561 -18402698 - ID4_ SINE ID -2 81 2 3 1608 469 239 34 27 chr5 134134572 134134718 -18402541 - B1F SINE Alu -2 147 1 3 1608 347 157 100 0 chr5 134134764 134134834 -18402425 - RSINE1 SINE B4 -21 144 68 3 1608 713 227 117 16 chr5 134135062 134135288 -18401971 + B4 SINE B4 14 290 -2 3 1608 1149 128 0 2 chr5 134135526 134136052 -18401207 + (CA)n Simple_repeat Simple_repeat 1 525 0 3 1608 231 241 0 0 chr5 134136131 134136189 -18401070 - B4A SINE B4 -233 59 2 3 1608 562 293 87 16 chr5 134136800 134136984 -18400275 - B3A SINE B2 -1 197 1 3 1608 473 306 113 24 chr5 134137136 134137384 -18399875 - B4A SINE B4 -20 272 3 3 1608 478 310 49 49 chr5 134137645 134137930 -18399329 + B4A SINE B4 2 286 -6 3 1608 1013 188 10 29 chr5 134138295 134138574 -18398685 - ZP3AR Satellite Satellite -94 273 1 3 1608 371 235 47 0 chr5 134139307 134139392 -18397867 + PB1D10 SINE Alu 20 108 -9 3 1608 226 235 12 12 chr5 134139511 134139593 -18397666 + CT-rich Low_complexity Low_complexity 3 84 0 3 1608 360 0 0 0 chr5 134139618 134139658 -18397601 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1608 279 0 0 0 chr5 134139658 134139688 -18397571 + (GA)n Simple_repeat Simple_repeat 1 31 0 3 1608 406 310 48 11 chr5 134139787 134139976 -18397283 + L3b LINE CR1 32 227 -255 3 1608 629 268 27 27 chr5 134140092 134140116 -18397143 - B3 SINE B2 -28 188 164 3 1608 378 100 0 0 chr5 134140116 134140176 -18397083 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1608 743 220 31 25 chr5 134140176 134140339 -18396920 - B3A SINE B2 -34 164 1 3 1608 432 0 0 0 chr5 134140503 134140551 -18396708 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1608 781 278 27 93 chr5 134140624 134140925 -18396334 - B4 SINE B4 -10 282 2 3 1608 662 247 30 55 chr5 134141578 134141779 -18395480 + B3A SINE B2 3 198 0 3 1608 488 266 21 14 chr5 134141941 134142082 -18395177 + RSINE1 SINE B4 3 144 -21 3 1608 416 245 39 30 chr5 134142420 134142585 -18394674 - ORR1E LTR MaLR -154 216 51 3 1608 1745 188 38 89 chr5 134142585 134143092 -18394167 + RLTR28B LTR ERVL 1 481 0 3 1608 522 246 11 64 chr5 134143147 134143334 -18393925 - L1M2 LINE L1 -663 5637 5461 3 1608 563 212 173 63 chr5 134143366 134143557 -18393702 + B4 SINE B4 2 213 -79 3 1608 630 161 0 0 chr5 134143567 134143722 -18393537 + GA-rich Low_complexity Low_complexity 1 155 0 3 1608 822 162 0 0 chr5 134143736 134143915 -18393344 + GA-rich Low_complexity Low_complexity 2 180 0 3 1608 273 29 0 0 chr5 134144004 134144038 -18393221 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1608 678 94 46 23 chr5 134144415 134144589 -18392670 + (CA)n Simple_repeat Simple_repeat 1 178 0 3 1608 1009 152 129 20 chr5 134145017 134145218 -18392041 + URR1A DNA MER1_type 4 226 0 3 1608 219 36 0 0 chr5 134145253 134145281 -18391978 + (TG)n Simple_repeat Simple_repeat 2 29 0 3 1608 229 338 0 14 chr5 134145295 134145364 -18391895 - B3A SINE B2 -73 125 58 3 1608 391 360 29 0 chr5 134145417 134145556 -18391703 + ZP3AR Satellite Satellite 46 188 -24 3 1608 2148 121 10 71 chr5 134145654 134146063 -18391196 - ORR1B1 LTR MaLR -9 385 2 3 1608 244 267 0 0 chr5 134146281 134146341 -18390918 + GA-rich Low_complexity Low_complexity 3 62 0 3 1608 348 259 155 78 chr5 134146341 134146483 -18390776 - B3A SINE B2 -45 153 1 3 1608 862 274 86 25 chr5 134146748 134147073 -18390186 - MTE2a LTR MaLR -16 363 19 3 1608 375 261 92 8 chr5 134147886 134148017 -18389242 + B1F SINE Alu 1 142 -7 3 1608 21 0 0 0 chr5 134148040 134148061 -18389198 + AT_rich Low_complexity Low_complexity 1 21 0 3 1608 1241 158 0 5 chr5 134148061 134148290 -18388969 + ZP3AR Satellite Satellite 1 227 0 3 1608 1229 224 20 75 chr5 134148294 134148641 -18388618 + MT2B LTR ERVL 274 601 0 3 1608 1950 161 75 70 chr5 134148837 134149067 -18388192 + MTC LTR MaLR 5 243 -178 3 1608 1260 86 0 0 chr5 134149067 134149416 -18387843 + (CCA)n Simple_repeat Simple_repeat 1 349 0 3 1608 1950 161 75 70 chr5 134149416 134149598 -18387661 + MTC LTR MaLR 244 421 0 3 1608 310 224 330 0 chr5 134149671 134149789 -18387470 + B3A SINE B2 1 157 -41 3 1608 290 87 0 21 chr5 134149796 134149843 -18387416 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1608 1237 291 127 40 chr5 134150243 134150794 -18386465 + Lx8 LINE L1 6866 7464 -9 3 1608 227 143 0 39 chr5 134150864 134150915 -18386344 + GA-rich Low_complexity Low_complexity 1 49 0 3 1608 297 0 0 0 chr5 134150955 134150988 -18386271 + (CTG)n Simple_repeat Simple_repeat 3 35 0 3 1608 565 280 41 12 chr5 134152271 134152441 -18384818 + B3A SINE B2 2 176 -22 3 1608 297 0 0 0 chr5 134152455 134152488 -18384771 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1608 535 290 19 25 chr5 134153477 134153636 -18383623 - RSINE1 SINE B4 -1 164 7 3 1608 803 240 60 140 chr5 134153698 134153904 -18383355 - B4 SINE B4 -13 279 85 3 1608 261 0 0 0 chr5 134153904 134153933 -18383326 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 1608 598 311 16 0 chr5 134153933 134154116 -18383143 - B3A SINE B2 -11 187 2 3 1608 803 240 60 140 chr5 134154116 134154208 -18383051 - B4 SINE B4 -208 84 5 3 1608 243 0 0 0 chr5 134154243 134154270 -18382989 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3 1608 496 228 31 16 chr5 134154461 134154590 -18382669 + MTE2a LTR MaLR 249 379 0 3 1608 283 360 50 29 chr5 134154731 134154871 -18382388 + B4 SINE B4 2 144 -148 3 1608 231 330 84 9 chr5 134154818 134154925 -18382334 + B1F1 SINE Alu 7 121 -28 3 1608 372 22 0 0 chr5 134155563 134155608 -18381651 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1608 329 250 0 0 chr5 134155613 134155689 -18381570 - B4 SINE B4 -22 270 195 3 1608 1244 251 24 39 chr5 134155686 134156018 -18381241 + MTE2b LTR MaLR 38 364 -15 3 1608 390 329 51 23 chr5 134156168 134156345 -18380914 + B3A SINE B2 1 182 -16 3 1608 392 259 14 0 chr5 134156353 134156492 -18380767 + (CATA)n Simple_repeat Simple_repeat 1 141 0 3 1608 261 160 74 19 chr5 134156752 134156860 -18380399 + (TCTA)n Simple_repeat Simple_repeat 3 116 0 3 1608 423 0 0 0 chr5 134156944 134156991 -18380268 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 1608 233 119 24 0 chr5 134157438 134157480 -18379779 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1608 300 213 40 0 chr5 134157718 134157793 -18379466 - B4A SINE B4 -214 78 1 3 1608 354 23 0 0 chr5 134157874 134157917 -18379342 + (CAGA)n Simple_repeat Simple_repeat 3 45 0 3 1608 734 270 61 109 chr5 134157926 134157987 -18379272 - MTE2a LTR MaLR 0 379 320 3 1608 3040 20 6 3 chr5 134157987 134158332 -18378927 + ORR1A0 LTR MaLR 1 346 0 3 1608 734 270 61 109 chr5 134158332 134158582 -18378677 - MTE2a LTR MaLR -60 319 83 3 1608 591 124 16 16 chr5 134158588 134158711 -18378548 + C-rich Low_complexity Low_complexity 3 125 0 4 1608 296 222 21 62 chr5 134158713 134158809 -18378450 - MTE2a LTR MaLR -327 92 1 3 1608 180 0 0 0 chr5 134159231 134159251 -18378008 + (G)n Simple_repeat Simple_repeat 1 20 0 4 1608 631 262 22 71 chr5 134159266 134159492 -18377767 - B3A SINE B2 0 216 2 4 1608 732 251 17 0 chr5 134159606 134159781 -18377478 + MTE2a LTR MaLR 2 179 -200 4 1608 761 288 16 28 chr5 134159879 134160126 -18377133 + B4 SINE B4 2 245 -47 4 1608 2097 125 42 18 chr5 134160149 134160532 -18376727 + RMER6A LTR ERVK 365 756 0 4 1608 609 14 0 0 chr5 134160538 134160608 -18376651 + (TC)n Simple_repeat Simple_repeat 1 70 0 4 1608 366 74 0 0 chr5 134160608 134160661 -18376598 + (CA)n Simple_repeat Simple_repeat 1 54 0 4 1608 284 307 17 50 chr5 134160981 134161101 -18376158 + PB1D10 SINE Alu 1 116 -1 4 1608 609 269 10 15 chr5 134161101 134161696 -18375563 + GA-rich Low_complexity Low_complexity 1 591 0 4 1608 1467 59 24 6 chr5 134162253 134163023 -18374236 + ZP3AR Satellite Satellite 1 784 -2 4 1608 265 260 41 0 chr5 134163031 134163104 -18374155 - B1F SINE Alu 0 149 74 4 1608 342 165 0 0 chr5 134163132 134163211 -18374048 + T-rich Low_complexity Low_complexity 1 79 0 4 1608 225 155 0 0 chr5 134163222 134163280 -18373979 + (TTAGGG)n Simple_repeat Simple_repeat 5 62 0 4 1608 1101 83 14 0 chr5 134163314 134163459 -18373800 - B1_Mus1 SINE Alu 0 148 2 4 1608 282 278 10 67 chr5 134163599 134163652 -18373607 + MTD LTR MaLR 302 350 -69 4 1608 4122 101 170 86 chr5 134163652 134164488 -18372771 + RMER17A2 LTR ERVK 1 906 0 4 1608 282 278 10 67 chr5 134164488 134164538 -18372721 + MTD LTR MaLR 351 399 -20 4 1608 382 306 0 0 chr5 134164567 134164688 -18372571 + L1MA6 LINE L1 6016 6136 -164 4 1608 791 270 28 69 chr5 134164692 134164886 -18372373 + B4A SINE B4 3 195 -97 4 1608 240 35 0 0 chr5 134164886 134164915 -18372344 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 4 1608 791 270 28 69 chr5 134164915 134165010 -18372249 + B4A SINE B4 196 279 -13 4 1608 420 97 0 0 chr5 134165021 134165083 -18372176 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1608 892 177 6 22 chr5 134165099 134165278 -18371981 + L1MA6 LINE L1 6125 6300 0 4 1608 397 254 8 17 chr5 134165290 134165410 -18371849 - L1M5 LINE L1 -493 5686 5568 4 1608 893 293 134 13 chr5 134165478 134165852 -18371407 + MTD LTR MaLR 1 419 0 4 1608 264 200 46 0 chr5 134166008 134166073 -18371186 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 4 1608 360 111 0 0 chr5 134166074 134166128 -18371131 + (CAGG)n Simple_repeat Simple_repeat 1 54 0 4 1608 2866 95 120 0 chr5 134166136 134166611 -18370648 + RLTR47_MM LTR ERV1 1 532 0 4 1608 647 101 50 12 chr5 134166611 134166766 -18370493 + (TAGA)n Simple_repeat Simple_repeat 4 165 0 4 1608 1267 230 116 12 chr5 134167107 134167442 -18369817 + MTD LTR MaLR 12 381 -38 4 1608 414 0 0 0 chr5 134167442 134167488 -18369771 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 4 1608 561 291 16 38 chr5 134167838 134168024 -18369235 + MTD LTR MaLR 6 187 -232 4 1608 450 94 0 0 chr5 134168027 134168091 -18369168 + (TC)n Simple_repeat Simple_repeat 2 65 0 4 1608 277 312 38 60 chr5 134168107 134168240 -18369019 + MTD LTR MaLR 250 379 0 4 1608 23 0 0 0 chr5 134168333 134168356 -18368903 + AT_rich Low_complexity Low_complexity 1 23 0 4 1608 283 336 15 0 chr5 134168449 134168586 -18368673 - L1ME1 LINE L1 -139 6173 6035 4 1608 225 0 0 0 chr5 134168593 134168618 -18368641 + (TG)n Simple_repeat Simple_repeat 1 25 0 4 1608 477 0 0 0 chr5 134168618 134168670 -18368589 + (GA)n Simple_repeat Simple_repeat 1 53 0 4 1608 771 307 59 15 chr5 134168705 134168976 -18368283 - B4A SINE B4 0 292 10 4 1608 626 279 28 17 chr5 134169058 134169266 -18367993 + B3A SINE B2 1 216 0 4 1608 1035 115 0 0 chr5 134169701 134169858 -18367401 + (GAA)n Simple_repeat Simple_repeat 2 158 0 4 1608 260 111 22 0 chr5 134170058 134170103 -18367156 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1608 506 326 0 53 chr5 134170109 134170261 -18366998 - B3A SINE B2 -47 151 8 4 1608 803 287 9 9 chr5 134170266 134170491 -18366768 - B4A SINE B4 -67 225 1 4 1608 493 278 33 53 chr5 134170544 134170807 -18366452 - L1ME1 LINE L1 -187 5992 5738 4 1608 670 283 25 46 chr5 134170854 134171091 -18366168 - B4A SINE B4 -4 288 57 4 1608 649 291 119 30 chr5 134171236 134171572 -18365687 - MT2A LTR ERVL -160 373 8 4 1608 667 270 128 50 chr5 134171618 134171882 -18365377 - RMER5 LTR ERV1 -144 390 120 4 1608 3978 84 70 2 chr5 134171882 134172429 -18364830 + MT2B2 LTR ERVL 1 584 0 4 1608 667 270 128 50 chr5 134172429 134172484 -18364775 - RMER5 LTR ERV1 -415 119 46 4 1608 711 205 8 1 chr5 134172736 134172883 -18364376 + B4A SINE B4 81 228 -64 4 1608 1488 193 90 28 chr5 134172903 134173260 -18363999 - ORR1C2 LTR MaLR -2 382 4 4 1608 592 246 7 22 chr5 134173267 134173404 -18363855 + B3A SINE B2 18 152 -46 4 1608 435 38 0 0 chr5 134173413 134173466 -18363793 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1608 198 0 0 0 chr5 134173620 134173642 -18363617 + (T)n Simple_repeat Simple_repeat 1 22 0 4 1608 36763 62 1 7 chr5 134173719 134179681 -18357578 - L1Md_F2 LINE L1 -2 6583 563 4 1608 615 155 0 28 chr5 134179674 134179780 -18357479 - L1Md_F2 LINE L1 -6282 337 235 4 1608 469 317 30 0 chr5 134179954 134180118 -18357141 + ZP3AR Satellite Satellite 42 210 -2 4 1608 340 169 14 14 chr5 134180068 134180140 -18357119 + ID4_ SINE ID 9 80 -3 4 1608 1314 173 0 18 chr5 134180606 134180835 -18356424 + URR1B DNA MER1_type 1 225 0 4 1608 1835 154 28 52 chr5 134181891 134182046 -18355213 + ORR1B1 LTR MaLR 41 183 -211 4 1608 504 72 0 0 chr5 134182046 134182115 -18355144 + (CCTG)n Simple_repeat Simple_repeat 4 72 0 4 1608 1835 154 28 52 chr5 134182115 134182322 -18354937 + ORR1B1 LTR MaLR 184 394 0 4 1608 1298 173 38 4 chr5 134182979 134183217 -18354042 - MTEa LTR MaLR -1 378 133 4 1608 2705 39 39 3 chr5 134183214 134183577 -18353682 - MTB LTR MaLR -24 376 1 4 1608 485 273 10 118 chr5 134183908 134184103 -18353156 + B4 SINE B4 2 175 -117 4 1608 1077 258 57 20 chr5 134184211 134184512 -18352747 - MTD LTR MaLR -15 404 93 4 1608 552 15 0 0 chr5 134184539 134184604 -18352655 + (CATA)n Simple_repeat Simple_repeat 2 66 0 4 1608 21 0 0 0 chr5 134185203 134185224 -18352035 + AT_rich Low_complexity Low_complexity 1 21 0 4 1608 1253 82 29 17 chr5 134185771 134185945 -18351314 - B2_Mm2 SINE B2 -18 177 2 4 1608 3353 126 32 94 chr5 134185999 134186683 -18350576 - RLTR26 LTR ERVK 0 642 1 4 1608 980 173 142 26 chr5 134186706 134186938 -18350321 + MTEa LTR MaLR 121 379 0 4 1608 585 254 45 91 chr5 134187024 134187223 -18350036 + B3A SINE B2 4 193 -5 4 1608 501 17 0 0 chr5 134187560 134187618 -18349641 + (CA)n Simple_repeat Simple_repeat 1 58 0 4 1608 391 229 0 0 chr5 134187790 134187860 -18349399 - B3A SINE B2 -121 77 8 4 1608 243 114 0 0 chr5 134188014 134188058 -18349201 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 4 1608 280 289 144 69 chr5 134188115 134188275 -18348984 - Lx8 LINE L1 -2 7471 7300 4 1608 343 242 54 21 chr5 134188275 134188368 -18348891 - Lx8 LINE L1 -329 7144 7049 4 1608 404 242 65 24 chr5 134188386 134188509 -18348750 - ID_B1 SINE B4 -13 211 84 4 1608 200 284 0 18 chr5 134188706 134188768 -18348491 + MIR SINE MIR 38 98 -170 4 1608 305 329 0 0 chr5 134189026 134189108 -18348151 - ID4_ SINE ID 0 83 2 4 1608 279 326 29 22 chr5 134189201 134189339 -18347920 - B1F1 SINE Alu -8 141 3 4 1608 495 0 0 0 chr5 134189757 134189812 -18347447 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1608 675 299 24 51 chr5 134189878 134190174 -18347085 - B4A SINE B4 -4 288 1 4 1608 189 178 0 0 chr5 134191076 134191121 -18346138 + G-rich Low_complexity Low_complexity 1 45 0 4 1608 290 317 12 0 chr5 134191123 134191205 -18346054 - ID4_ SINE ID 0 83 1 4 1608 326 240 28 3 chr5 134191205 134191316 -18345943 - ZP3AR Satellite Satellite -64 148 25 4 1608 219 284 49 0 chr5 134191341 134191422 -18345837 - B1F SINE Alu -27 122 38 4 1608 335 196 34 0 chr5 134192012 134192096 -18345163 + MTE2b LTR MaLR 2 90 -289 4 1608 1207 264 61 37 chr5 134192359 134192820 -18344439 - RMER5 LTR ERV1 -30 504 33 4 1608 1096 265 4 0 chr5 134192871 134193116 -18344143 + B4 SINE B4 43 288 -4 4 1608 1205 127 127 0 chr5 134193136 134193364 -18343895 + ORR1B1 LTR MaLR 1 257 -137 4 1608 754 159 0 8 chr5 134193472 134193599 -18343660 + ORR1B1 LTR MaLR 236 361 -6 4 1608 261 0 0 0 chr5 134193602 134193631 -18343628 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1608 324 103 0 0 chr5 134193631 134193689 -18343570 + (GA)n Simple_repeat Simple_repeat 1 58 0 4 1608 406 272 74 51 chr5 134195112 134195329 -18341930 + RMER15 LTR ERVL 336 557 -18 4 1608 3851 121 20 50 chr5 134195713 134196472 -18340787 + RMER17A LTR ERVK 1 736 -15 4 1608 192 246 0 0 chr5 134196618 134196687 -18340572 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 1608 345 140 0 0 chr5 134196762 134196819 -18340440 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 4 1608 579 264 84 47 chr5 134196839 134197054 -18340205 - B4 SINE B4 -68 224 2 4 1608 471 87 0 0 chr5 134197283 134197352 -18339907 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 1608 846 286 65 12 chr5 134197389 134197637 -18339622 - B4 SINE B4 -4 288 28 4 1608 685 278 54 73 chr5 134198137 134198397 -18338862 - B4 SINE B4 0 292 38 4 1608 261 299 68 11 chr5 134198478 134198566 -18338693 - MTC LTR MaLR -40 379 287 4 1608 1235 54 0 0 chr5 134198568 134198716 -18338543 + B1_Mus1 SINE Alu 1 148 0 4 1608 284 15 108 0 chr5 134198716 134198781 -18338478 + (CAAA)n Simple_repeat Simple_repeat 1 72 0 4 1608 427 344 84 13 chr5 134198878 134199105 -18338154 - MTC LTR MaLR -161 260 18 4 1608 1179 103 0 4 chr5 134199548 134199790 -18337469 + (GGAGAA)n Simple_repeat Simple_repeat 1 241 0 4 1608 22 0 0 0 chr5 134200607 134200629 -18336630 + AT_rich Low_complexity Low_complexity 1 22 0 4 1608 607 242 63 13 chr5 134200655 134200814 -18336445 - B3A SINE B2 -30 168 2 5 1608 1488 266 50 12 chr5 134200902 134201306 -18335953 + MTD LTR MaLR 1 419 0 5 1608 233 325 8 42 chr5 134201306 134201425 -18335834 + MER2 DNA MER2_type 179 293 -52 5 1608 670 306 6 12 chr5 134201460 134201632 -18335627 + ID_B1 SINE B4 37 207 -17 5 1608 353 289 125 7 chr5 134202327 134202463 -18334796 + MER2B DNA MER2_type 175 326 -10 5 1608 370 245 161 12 chr5 134205084 134205245 -18332014 - ORR1E LTR MaLR -21 338 154 5 1608 312 277 10 21 chr5 134205319 134205415 -18331844 + CT-rich Low_complexity Low_complexity 3 97 0 5 1608 244 367 14 41 chr5 134205426 134205571 -18331688 + LTR16E2 LTR ERVL 352 492 -76 5 1608 635 177 14 40 chr5 134205718 134206124 -18331135 + GA-rich Low_complexity Low_complexity 1 395 0 5 1608 227 224 17 33 chr5 134207109 134207169 -18330090 + CT-rich Low_complexity Low_complexity 2 60 0 5 1608 648 299 28 6 chr5 134207336 134207514 -18329745 - ID_B1 SINE B4 -10 214 33 5 1608 347 287 48 79 chr5 134207869 134208058 -18329201 + HAL1 LINE L1 2324 2506 -1 5 1608 959 230 109 16 chr5 134208229 134208485 -18328774 + B4A SINE B4 1 280 -12 5 1608 243 214 0 0 chr5 134208498 134208568 -18328691 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1608 201 182 0 0 chr5 134209159 134209192 -18328067 + (TTA)n Simple_repeat Simple_repeat 3 35 0 5 1608 252 0 0 0 chr5 134209222 134209250 -18328009 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1608 474 307 100 0 chr5 134209250 134209400 -18327859 - B3 SINE B2 -50 166 2 5 1608 457 293 73 0 chr5 134209431 134209554 -18327705 - B4 SINE B4 -156 136 5 5 1608 363 288 49 76 chr5 134209988 134210172 -18327087 + MTEb LTR MaLR 5 183 -196 5 1608 195 0 86 0 chr5 134210208 134210243 -18327016 + (CCCA)n Simple_repeat Simple_repeat 1 38 0 5 1608 1974 150 8 22 chr5 134210310 134210665 -18326594 - ORR1B2 LTR MaLR 0 367 18 5 1608 473 270 9 0 chr5 134211008 134211123 -18326136 + ID_B1 SINE B4 105 220 -4 5 1608 444 248 17 8 chr5 134211134 134211252 -18326007 + B3A SINE B2 2 120 -78 5 1608 761 31 0 10 chr5 134211272 134211369 -18325890 + (GAA)n Simple_repeat Simple_repeat 3 98 0 5 1608 226 253 24 0 chr5 134211370 134211453 -18325806 + G-rich Low_complexity Low_complexity 1 85 0 5 1608 1176 258 15 0 chr5 134211963 134212234 -18325025 + Lx8 LINE L1 6550 6824 -649 5 1608 248 245 0 0 chr5 134212236 134212285 -18324974 + RMER13B LTR ERVK 624 672 -236 5 1608 403 342 0 32 chr5 134212286 134212443 -18324816 + Lx8 LINE L1 6906 7057 -416 5 1608 3738 195 26 16 chr5 134212553 134213408 -18323851 - RMER13B LTR ERVK -5 903 1 5 1608 800 215 159 12 chr5 134213408 134213653 -18323606 + Lx8 LINE L1 7190 7470 -3 5 1608 4161 156 31 14 chr5 134213661 134214375 -18322884 + Lx5 LINE L1 4979 5704 -173 5 1608 2815 156 50 18 chr5 134214375 134214819 -18322440 + RLTR20B2 LTR ERVK 1 462 -98 5 1608 432 117 0 0 chr5 134214819 134214896 -18322363 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1608 2815 156 50 18 chr5 134214896 134214994 -18322265 + RLTR20B2 LTR ERVK 463 559 -1 5 1608 7545 175 31 13 chr5 134214994 134216312 -18320947 + Lx5 LINE L1 5705 7046 -4 5 1608 773 87 9 0 chr5 134216499 134216614 -18320645 + (GA)n Simple_repeat Simple_repeat 2 117 0 5 1608 373 296 31 39 chr5 134217138 134217268 -18319991 + B1F1 SINE Alu 12 140 -9 5 1608 1255 148 48 0 chr5 134217266 134217511 -18319748 + ZP3AR Satellite Satellite 1 256 0 5 0 282 262 0 0 chr5 134217688 134217749 -18319510 - MIRb SINE MIR -76 192 132 5 1609 3369 64 46 44 chr5 134217792 134218267 -18318992 + L1_Mus2 LINE L1 6091 6566 0 5 1609 321 250 12 23 chr5 134218830 134218916 -18318343 - MLT1A1 LTR MaLR -279 129 45 5 1609 1648 127 70 70 chr5 134219404 134219597 -18317662 - ORR1A4 LTR MaLR 0 329 138 5 1609 2800 72 164 2 chr5 134219597 134220055 -18317204 + RLTR47_MM LTR ERV1 1 532 0 5 1609 1648 127 70 70 chr5 134220055 134220190 -18317069 - ORR1A4 LTR MaLR -192 137 2 5 1609 311 167 0 3 chr5 134220258 134220322 -18316937 + MTC LTR MaLR 1 64 -343 5 1609 1346 216 119 66 chr5 134220328 134220825 -18316434 - RLTR11A LTR ERVK -5 523 1 5 1609 1791 153 67 17 chr5 134220825 134221171 -18316088 + MTC LTR MaLR 57 419 -2 5 1609 360 249 43 94 chr5 134221569 134221828 -18315431 - ZP3AR Satellite Satellite -79 245 1 5 1609 386 206 82 27 chr5 134223124 134223234 -18314025 + B1F1 SINE Alu 6 121 -28 5 1609 337 303 5 53 chr5 134223272 134223460 -18313799 + GA-rich Low_complexity Low_complexity 1 179 0 5 1609 189 74 0 0 chr5 134224021 134224048 -18313211 + (TG)n Simple_repeat Simple_repeat 2 28 0 5 1609 731 253 13 0 chr5 134224059 134224217 -18313042 - RSINE1 SINE B4 -4 161 2 5 1609 300 315 0 36 chr5 134224281 134224393 -18312866 + PB1D10 SINE Alu 1 108 -9 5 1609 274 275 0 14 chr5 134224393 134224463 -18312796 + ZP3AR Satellite Satellite 48 116 -96 5 1609 853 268 137 15 chr5 134225477 134225877 -18311382 - RMER15 LTR ERVL -21 554 38 5 1609 246 147 26 39 chr5 134226124 134226202 -18311057 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1609 506 122 37 0 chr5 134226291 134226398 -18310861 + (TG)n Simple_repeat Simple_repeat 1 111 0 5 1609 201 74 0 0 chr5 134226947 134226974 -18310285 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 5 1609 303 362 118 5 chr5 134227106 134227292 -18309967 - L1M5 LINE L1 -432 5692 5486 5 1609 441 257 0 9 chr5 134227315 134227425 -18309834 + PB1D10 SINE Alu 1 109 -8 5 1609 1195 264 110 11 chr5 134227500 134227936 -18309323 - RMER5 LTR ERV1 -12 522 44 5 1609 236 385 0 0 chr5 134228059 134228142 -18309117 + B3A SINE B2 1 83 -115 5 1609 616 264 52 41 chr5 134228400 134228594 -18308665 - B3A SINE B2 -2 196 1 5 1609 378 188 194 20 chr5 134229230 134229328 -18307931 - PB1D10 SINE Alu -2 115 1 5 1609 378 0 0 0 chr5 134229355 134229397 -18307862 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1609 949 269 48 4 chr5 134229426 134229698 -18307561 - B4 SINE B4 -6 286 3 5 1609 365 304 39 72 chr5 134230677 134230858 -18306401 + B4A SINE B4 25 199 -93 5 1609 189 0 0 0 chr5 134231425 134231446 -18305813 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1609 432 250 21 10 chr5 134231540 134231637 -18305622 - B3 SINE B2 -80 136 39 5 1609 1891 141 94 19 chr5 134231887 134232249 -18305010 + ORR1B1 LTR MaLR 6 394 0 5 1609 614 307 87 14 chr5 134232390 134232598 -18304661 - ID_B1 SINE B4 0 224 2 5 1609 531 210 20 0 chr5 134232598 134232698 -18304561 - PB1D10 SINE Alu -6 111 10 5 1609 268 259 106 0 chr5 134232986 134233071 -18304188 - RMER15 LTR ERVL -18 557 464 5 1609 1988 161 50 21 chr5 134233039 134233073 -18304186 - MTC LTR MaLR -28 393 366 5 1609 1890 123 38 68 chr5 134233073 134233412 -18303847 - ORR1A4 LTR MaLR 0 329 1 5 1609 1988 161 50 21 chr5 134233412 134233759 -18303500 - MTC LTR MaLR -56 365 1 5 1609 831 234 56 9 chr5 134233759 134233967 -18303292 - RMER15 LTR ERVL -74 501 284 5 1609 940 273 151 30 chr5 134233999 134234331 -18302928 - MTD LTR MaLR 0 419 48 5 1609 358 171 42 74 chr5 134234355 134234450 -18302809 - RMER15 LTR ERVL -439 136 45 5 1609 350 387 0 34 chr5 134234732 134234911 -18302348 + LTR84b LTR ERVL 515 687 -74 5 1609 24 0 0 0 chr5 134234926 134234950 -18302309 + AT_rich Low_complexity Low_complexity 1 24 0 5 1609 681 278 23 6 chr5 134234973 134235150 -18302109 - B3A SINE B2 -16 182 3 5 1609 342 287 41 20 chr5 134235327 134235473 -18301786 + (TATATG)n Simple_repeat Simple_repeat 4 152 0 5 1609 354 331 14 61 chr5 134235532 134235680 -18301579 - B4A SINE B4 -150 142 2 5 1609 268 243 39 39 chr5 134236066 134236143 -18301116 + ID4 SINE ID 6 82 -1 5 1609 229 309 0 23 chr5 134236146 134236232 -18301027 + GA-rich Low_complexity Low_complexity 4 87 0 5 1609 665 288 98 8 chr5 134236392 134236503 -18300756 - Lx8 LINE L1 0 7473 7349 5 1609 384 22 0 0 chr5 134236503 134236548 -18300711 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1609 665 288 98 8 chr5 134236548 134236702 -18300557 - Lx8 LINE L1 -125 7348 7185 5 1609 212 242 0 16 chr5 134237311 134237374 -18299885 + B1_Mur1 SINE Alu 86 147 -2 5 1609 1149 81 0 0 chr5 134237755 134237903 -18299356 + B1_Mus1 SINE Alu 1 148 0 5 1609 263 313 10 0 chr5 134238008 134238107 -18299152 - MTEb LTR MaLR -13 366 267 5 1609 249 118 12 50 chr5 134238571 134238651 -18298608 + T-rich Low_complexity Low_complexity 2 78 0 5 1609 298 326 11 0 chr5 134238803 134238895 -18298364 - MLT2B3 LTR ERVL -460 94 2 5 1609 777 105 222 0 chr5 134239503 134239656 -18297603 - B2_Mm2 SINE B2 0 195 9 5 1609 1352 245 65 23 chr5 134239880 134240231 -18297028 + MTEa LTR MaLR 14 379 0 5 1609 512 335 57 12 chr5 134240263 134240511 -18296748 - MLT1C LTR MaLR -5 462 204 5 1609 375 181 150 0 chr5 134240563 134240679 -18296580 + MER34B-int LTR ERV1 1610 1713 -3643 5 1609 388 250 198 8 chr5 134240743 134240864 -18296395 + B3 SINE B2 1 144 -72 5 1609 468 0 0 0 chr5 134240865 134240917 -18296342 + (CA)n Simple_repeat Simple_repeat 2 53 0 5 1609 441 0 0 0 chr5 134241063 134241112 -18296147 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1609 262 244 84 16 chr5 134241196 134241315 -18295944 - L1MA4 LINE L1 -370 5930 5797 5 1609 378 0 0 0 chr5 134241316 134241358 -18295901 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1609 264 137 0 0 chr5 134241438 134241489 -18295770 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1609 367 325 120 0 chr5 134241489 134241606 -18295653 + RSINE1 SINE B4 4 134 -31 5 1609 420 20 0 0 chr5 134241626 134241675 -18295584 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1609 297 257 84 19 chr5 134242356 134242463 -18294796 - ORR1E LTR MaLR -7 372 259 5 1609 964 233 96 146 chr5 134242504 134242921 -18294338 - MTD LTR MaLR -14 405 10 5 1609 627 259 123 0 chr5 134242931 134243101 -18294158 - ORR1E LTR MaLR -168 191 1 5 1609 339 312 127 30 chr5 134243188 134243353 -18293906 - MLT1L LTR MaLR -3 607 427 5 1609 844 282 41 11 chr5 134243407 134243676 -18293583 - MT2A LTR ERVL -12 521 245 5 1609 240 35 0 0 chr5 134243847 134243876 -18293383 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1609 785 260 35 80 chr5 134243923 134244211 -18293048 - B4A SINE B4 -16 276 2 6 1609 180 97 0 0 chr5 134244362 134244393 -18292866 + (T)n Simple_repeat Simple_repeat 1 31 0 6 1609 696 56 0 0 chr5 134244478 134244567 -18292692 + (GA)n Simple_repeat Simple_repeat 2 90 0 6 1609 686 287 5 30 chr5 134244669 134244870 -18292389 - B3A SINE B2 -1 197 2 6 1609 669 222 62 46 chr5 134245142 134245167 -18292092 - B3A SINE B2 0 198 173 6 1609 1284 89 0 0 chr5 134245167 134245347 -18291912 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1609 669 222 62 46 chr5 134245347 134245515 -18291744 - B3A SINE B2 -26 172 2 6 1609 423 38 0 0 chr5 134245634 134245687 -18291572 + (TTG)n Simple_repeat Simple_repeat 1 53 0 6 1609 290 253 12 25 chr5 134245759 134245840 -18291419 - B1F SINE Alu -8 141 62 6 1609 396 0 0 0 chr5 134246368 134246412 -18290847 + (GA)n Simple_repeat Simple_repeat 1 44 0 6 1609 536 321 57 37 chr5 134246530 134246776 -18290483 + RMER15 LTR ERVL 325 575 0 6 1609 1294 283 79 13 chr5 134246815 134247209 -18290050 + Lx8 LINE L1 6922 7341 -132 6 1609 231 354 147 36 chr5 134247280 134247532 -18289727 - MER31A LTR ERV1 -114 371 92 6 1609 342 259 82 18 chr5 134247562 134247672 -18289587 + MLT1A1 LTR MaLR 271 387 -21 6 1609 361 336 98 47 chr5 134247920 134248023 -18289236 + MLT1A1 LTR MaLR 63 162 -212 6 1609 210 37 0 0 chr5 134248023 134248050 -18289209 + (GA)n Simple_repeat Simple_repeat 2 28 0 6 1609 374 311 36 33 chr5 134248050 134248243 -18289016 + MLT1A1 LTR MaLR 163 408 0 6 1609 253 230 101 22 chr5 134249031 134249120 -18288139 - MTEa LTR MaLR -11 368 273 6 1609 648 182 0 0 chr5 134249194 134249326 -18287933 + GA-rich Low_complexity Low_complexity 1 132 0 6 1609 1001 215 160 162 chr5 134249640 134250078 -18287181 - MT2A LTR ERVL -96 437 1 6 1609 704 287 101 16 chr5 134250168 134250416 -18286843 + MTD LTR MaLR 1 269 -150 6 1609 341 318 144 0 chr5 134250777 134250909 -18286350 - ZP3AR Satellite Satellite -24 188 38 6 1609 254 278 23 37 chr5 134250907 134251020 -18286239 - PB1D10 SINE Alu 0 117 7 6 1609 417 244 109 95 chr5 134251033 134251130 -18286129 - Charlie1a DNA MER1_type -43 1412 1308 6 1609 702 237 0 0 chr5 134251130 134251269 -18285990 + B1_Mur1 SINE Alu 3 141 -8 6 1609 417 244 109 95 chr5 134251269 134251519 -18285740 - Charlie1a DNA MER1_type -148 1307 1060 6 1609 843 283 40 40 chr5 134251952 134252250 -18285009 + RMER15 LTR ERVL 278 575 0 6 1609 717 23 0 0 chr5 134253278 134253365 -18283894 + (TC)n Simple_repeat Simple_repeat 2 88 0 6 1609 351 0 0 0 chr5 134253365 134253403 -18283856 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1609 644 290 135 5 chr5 134253405 134253627 -18283632 - B4 SINE B4 -37 255 5 6 1609 560 262 7 29 chr5 134253920 134254087 -18283172 + L1MA5A LINE L1 5669 5828 -469 6 1609 790 208 11 38 chr5 134254091 134254276 -18282983 + B3A SINE B2 4 183 -15 6 1609 1799 235 7 17 chr5 134254422 134254838 -18282421 - MTD LTR MaLR -6 413 2 6 1609 393 58 0 0 chr5 134254846 134254898 -18282361 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1609 200 152 43 0 chr5 134254898 134254944 -18282315 + (TATG)n Simple_repeat Simple_repeat 1 48 0 6 1609 2021 136 63 9 chr5 134255172 134255520 -18281739 - ORR1B2 LTR MaLR 0 367 1 6 1609 208 286 37 12 chr5 134256404 134256567 -18280692 + (TA)n Simple_repeat Simple_repeat 1 167 0 6 1609 434 319 60 16 chr5 134256980 134257165 -18280094 + RMER15 LTR ERVL 383 575 0 6 1609 741 331 38 66 chr5 134257250 134257485 -18279774 + MT2A LTR ERVL 1 230 -303 6 1609 762 22 0 0 chr5 134257485 134257577 -18279682 + (CTG)n Simple_repeat Simple_repeat 1 92 0 6 1609 741 331 38 66 chr5 134257577 134257794 -18279465 + MT2A LTR ERVL 231 440 -93 6 1609 298 233 91 80 chr5 134257779 134257921 -18279338 + MT2A LTR ERVL 344 489 -44 6 1609 333 0 0 0 chr5 134257921 134257958 -18279301 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1609 189 0 0 0 chr5 134257958 134257978 -18279281 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 1609 298 233 91 80 chr5 134257978 134258021 -18279238 + MT2A LTR ERVL 490 531 -2 6 1609 1152 146 83 0 chr5 134258381 134258586 -18278673 + URR1A DNA MER1_type 5 226 0 6 1609 198 0 0 0 chr5 134259145 134259167 -18278092 + (CA)n Simple_repeat Simple_repeat 2 23 0 6 1609 2417 72 21 0 chr5 134260386 134260718 -18276541 + L1_Mus3 LINE L1 6300 6638 0 6 1609 5621 150 14 18 chr5 134260990 134261952 -18275307 + RMER17B LTR ERVK 1 958 0 6 1609 261 197 155 0 chr5 134262817 134262888 -18274371 + RMER15 LTR ERVL 1 82 -493 6 1609 859 253 100 11 chr5 134263002 134263262 -18273997 + RMER15 LTR ERVL 258 540 -35 6 1609 278 93 37 0 chr5 134263277 134263331 -18273928 + (CAGAGA)n Simple_repeat Simple_repeat 3 58 0 6 1609 195 42 0 0 chr5 134263713 134263737 -18273522 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1609 376 275 108 7 chr5 134264489 134264628 -18272631 - MLT1B LTR MaLR -204 186 34 6 1609 653 164 79 100 chr5 134264629 134264819 -18272440 + ORR1C2 LTR MaLR 1 186 -198 6 1609 340 221 28 28 chr5 134264856 134265033 -18272226 + CT-rich Low_complexity Low_complexity 2 178 0 6 1609 1077 176 19 28 chr5 134265049 134265260 -18271999 + ORR1C2 LTR MaLR 174 382 -2 6 1609 1507 280 52 65 chr5 134265375 134265994 -18271265 - Lx8 LINE L1 -2 7471 6861 6 1609 358 261 22 11 chr5 134266345 134266434 -18270825 - ID_B1 SINE B4 -133 91 2 6 1609 246 182 0 52 chr5 134267079 134267137 -18270122 + B4 SINE B4 32 86 -206 6 1609 4390 172 20 13 chr5 134267144 134267898 -18269361 + Lx5 LINE L1 6153 6911 -139 6 1609 520 315 0 63 chr5 134267898 134268088 -18269171 + B4 SINE B4 115 292 0 6 1609 869 276 150 0 chr5 134268382 134268704 -18268555 - MTD LTR MaLR -14 405 25 6 1609 415 274 0 49 chr5 134268910 134269033 -18268226 + PB1D10 SINE Alu 1 117 0 6 1609 234 125 0 0 chr5 134269047 134269095 -18268164 + (A)n Simple_repeat Simple_repeat 1 48 0 6 1609 320 200 23 12 chr5 134269128 134269214 -18268045 - MTE2b LTR MaLR 0 379 293 6 1609 504 198 23 69 chr5 134269218 134269348 -18267911 + MTEa LTR MaLR 251 374 -5 6 1609 591 147 0 0 chr5 134269452 134269554 -18267705 + (TTTC)n Simple_repeat Simple_repeat 1 102 0 6 1609 352 248 232 80 chr5 134270259 134270496 -18266763 + B4 SINE B4 2 274 -18 6 1609 207 204 0 0 chr5 134270568 134270622 -18266637 + (CA)n Simple_repeat Simple_repeat 1 54 0 6 1609 1246 41 0 0 chr5 134270805 134270952 -18266307 + B1_Mm SINE Alu 1 147 0 6 1609 33 0 0 0 chr5 134270952 134270985 -18266274 + AT_rich Low_complexity Low_complexity 1 33 0 6 1609 243 375 0 0 chr5 134271105 134271177 -18266082 - ID SINE ID -151 73 2 6 1609 495 198 49 16 chr5 134271185 134271308 -18265951 - B1F SINE Alu -1 148 22 6 1609 26 0 0 0 chr5 134271775 134271801 -18265458 + AT_rich Low_complexity Low_complexity 1 26 0 6 1609 1671 210 66 0 chr5 134272309 134272656 -18264603 + MTE2b LTR MaLR 2 371 -8 6 1609 1146 259 219 12 chr5 134272841 134273272 -18263987 - RMER15 LTR ERVL 0 575 56 6 1609 775 267 53 16 chr5 134273812 134274002 -18263257 + B4 SINE B4 32 228 -64 6 1609 369 301 70 107 chr5 134274409 134274861 -18262398 - RMER15 LTR ERVL -12 563 1 6 1609 524 324 14 18 chr5 134275328 134275545 -18261714 + L1ME3A LINE L1 5847 6062 -111 6 1609 391 258 22 0 chr5 134275678 134275767 -18261492 + B4A SINE B4 1 91 -201 6 1609 1723 172 243 8 chr5 134275788 134276269 -18260990 + RMER19B LTR ERVK 309 902 0 6 1609 332 359 58 77 chr5 134276269 134276461 -18260798 + B4 SINE B4 86 273 -19 6 1609 1292 152 189 3 chr5 134276582 134276878 -18260381 - ORR1B2 LTR MaLR -16 351 1 6 1609 305 267 130 130 chr5 134277524 134277778 -18259481 - ORR1E LTR MaLR -42 317 64 6 1609 1156 218 103 22 chr5 134277781 134278100 -18259159 + ORR1E LTR MaLR 15 359 0 6 1609 286 307 13 0 chr5 134278100 134278171 -18259088 - ORR1E LTR MaLR -287 72 1 6 1609 649 278 90 13 chr5 134278784 134279017 -18258242 + B4A SINE B4 36 286 -6 6 1609 227 175 17 34 chr5 134279023 134279082 -18258177 + (CA)n Simple_repeat Simple_repeat 1 58 0 6 1609 380 176 406 0 chr5 134279162 134279305 -18257954 + Lx8 LINE L1 6932 7132 -341 6 1609 222 241 18 9 chr5 134279435 134279544 -18257715 + (TA)n Simple_repeat Simple_repeat 2 111 0 6 1609 3074 19 0 81 chr5 134279862 134280259 -18257000 + RLTR10B2 LTR ERVK 1 365 0 6 1609 327 262 0 0 chr5 134280385 134280465 -18256794 - RMER30 DNA MER1_type -121 81 2 6 1609 333 180 0 0 chr5 134280562 134280623 -18256636 + ID SINE ID 4 64 -160 6 1609 227 271 0 28 chr5 134280565 134280637 -18256622 + tRNA-Ala-GCY_ tRNA tRNA 1 70 -5 6 1609 317 279 99 0 chr5 134280728 134280839 -18256420 - MTE2b LTR MaLR -257 122 1 6 1609 395 245 94 0 chr5 134280845 134280951 -18256308 - MTE2b-int LTR MaLR -3 1577 1462 6 1609 297 312 0 0 chr5 134281446 134281526 -18255733 - RMER30 DNA MER1_type -121 81 2 6 1609 493 289 143 49 chr5 134281738 134281928 -18255331 + B4 SINE B4 2 216 -76 6 1609 192 77 0 0 chr5 134281928 134281954 -18255305 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 6 1609 493 289 143 49 chr5 134281954 134282029 -18255230 + B4 SINE B4 217 291 -1 6 1609 450 0 0 0 chr5 134282063 134282113 -18255146 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1609 314 241 33 33 chr5 134282113 134282203 -18255056 + GA-rich Low_complexity Low_complexity 4 93 0 6 1609 446 212 208 68 chr5 134282477 134282669 -18254590 + ID_B1 SINE B4 4 222 -2 6 1609 712 260 43 90 chr5 134283417 134283717 -18253542 - B4 SINE B4 -6 286 1 6 1609 673 262 12 6 chr5 134283761 134283934 -18253325 + B4A SINE B4 8 181 -111 6 1609 1212 303 19 36 chr5 134284129 134284244 -18253015 - MT2A LTR ERVL -119 414 296 6 1609 3034 137 38 33 chr5 134284244 134284765 -18252494 - RLTR28 LTR ERVL 0 524 1 6 1609 1212 303 19 36 chr5 134284765 134285070 -18252189 - MT2A LTR ERVL -238 295 1 6 1609 571 347 55 5 chr5 134286062 134286282 -18250977 + B4 SINE B4 2 232 -60 6 1609 278 180 16 0 chr5 134286290 134286351 -18250908 + G-rich Low_complexity Low_complexity 2 63 0 6 1609 823 268 53 94 chr5 134286409 134286876 -18250383 + RMER15 LTR ERVL 1 538 -37 6 1609 528 45 0 0 chr5 134286878 134286945 -18250314 + (TG)n Simple_repeat Simple_repeat 2 68 0 7 1609 621 224 0 0 chr5 134287879 134288035 -18249224 + (TG)n Simple_repeat Simple_repeat 2 157 0 7 1609 639 241 83 18 chr5 134288037 134288070 -18249189 - B3A SINE B2 -18 180 148 7 1609 216 86 0 0 chr5 134288070 134288105 -18249154 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1609 639 241 83 18 chr5 134288105 134288240 -18249019 - B3A SINE B2 -51 147 1 7 1609 489 184 0 0 chr5 134289014 134289128 -18248131 + (CA)n Simple_repeat Simple_repeat 1 114 0 7 1609 231 304 11 21 chr5 134289138 134289232 -18248027 + (CATA)n Simple_repeat Simple_repeat 1 93 0 7 1609 841 252 66 44 chr5 134289255 134289529 -18247730 - RMER15 LTR ERVL 0 575 296 7 1609 350 129 16 0 chr5 134289576 134289638 -18247621 + (GGA)n Simple_repeat Simple_repeat 1 63 0 7 1609 552 30 0 0 chr5 134289645 134289711 -18247548 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 1609 279 210 48 36 chr5 134289711 134289787 -18247472 - RMER15 LTR ERVL -453 122 46 7 1609 398 298 5 33 chr5 134289842 134290026 -18247233 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 7 1609 230 293 0 7 chr5 134290054 134290205 -18247054 + (CA)n Simple_repeat Simple_repeat 2 151 0 7 1609 441 0 0 0 chr5 134290924 134290973 -18246286 + (CA)n Simple_repeat Simple_repeat 2 50 0 7 1609 542 344 54 57 chr5 134291023 134291377 -18245882 + ORR1E LTR MaLR 3 355 -4 7 1609 939 247 101 63 chr5 134291471 134291787 -18245472 + ORR1E LTR MaLR 4 331 -28 7 1609 249 95 46 35 chr5 134291797 134291884 -18245375 + T-rich Low_complexity Low_complexity 3 90 0 7 1609 762 317 10 60 chr5 134292306 134292580 -18244679 + B4 SINE B4 6 272 -20 7 1609 180 0 0 0 chr5 134292580 134292600 -18244659 + (CA)n Simple_repeat Simple_repeat 2 21 0 7 1609 762 317 10 60 chr5 134292600 134292627 -18244632 + B4 SINE B4 273 292 0 7 1609 234 0 0 0 chr5 134292774 134292800 -18244459 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1609 599 344 62 22 chr5 134293090 134293299 -18243960 + B4 SINE B4 13 230 -62 7 1609 865 253 0 36 chr5 134293299 134293492 -18243767 + B3A SINE B2 1 186 -12 7 1609 387 60 0 0 chr5 134293598 134293648 -18243611 + (CA)n Simple_repeat Simple_repeat 2 51 0 7 1609 367 222 0 0 chr5 134293820 134293892 -18243367 + PB1D10 SINE Alu 5 76 -41 7 1609 1099 243 125 0 chr5 134294440 134294777 -18242482 + MTE2b LTR MaLR 1 379 0 7 1609 216 0 0 0 chr5 134295134 134295158 -18242101 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 7 1609 1004 232 52 105 chr5 134295181 134295362 -18241897 - MTE2a LTR MaLR 0 379 189 7 1609 366 23 0 0 chr5 134295362 134295405 -18241854 + (CTTG)n Simple_repeat Simple_repeat 4 46 0 7 1609 1004 232 52 105 chr5 134295405 134295623 -18241636 - MTE2a LTR MaLR -191 188 1 7 1609 346 142 2 18 chr5 134295711 134295787 -18241472 - MTEb LTR MaLR -15 364 290 7 1609 483 18 0 0 chr5 134295920 134295976 -18241283 + (TG)n Simple_repeat Simple_repeat 2 57 0 7 1609 301 325 421 0 chr5 134295988 134296185 -18241074 - B4A SINE B4 0 292 13 7 1609 373 247 20 51 chr5 134296197 134296295 -18240964 - MTEa LTR MaLR -283 96 2 7 1609 230 305 25 12 chr5 134296363 134296461 -18240798 - MIRb SINE MIR -157 111 5 7 1609 1490 38 6 0 chr5 134296501 134296767 -18240492 + ZP3AR Satellite Satellite 1 267 0 7 1609 323 291 13 0 chr5 134296769 134296848 -18240411 + ID4_ SINE ID 4 83 0 7 1609 228 280 233 45 chr5 134297443 134297619 -18239640 + L3 LINE CR1 4258 4466 -23 7 1609 347 333 10 0 chr5 134297652 134297746 -18239513 + B4A SINE B4 2 96 -196 7 1609 514 261 19 96 chr5 134297746 134297903 -18239356 + B4A SINE B4 2 146 -146 7 1609 450 0 0 0 chr5 134297910 134297960 -18239299 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1609 392 293 0 41 chr5 134297976 134298097 -18239162 + B4A SINE B4 118 233 -59 7 1609 427 295 0 0 chr5 134298119 134298224 -18239035 - Lx8 LINE L1 -1064 6409 6305 7 1609 881 265 63 32 chr5 134298226 134298510 -18238749 + Lx8 LINE L1 7085 7377 -96 7 1609 219 204 0 0 chr5 134298539 134298588 -18238671 + GA-rich Low_complexity Low_complexity 6 54 0 7 1609 372 43 0 0 chr5 134298774 134298820 -18238439 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 7 1609 344 263 40 10 chr5 134300041 134300141 -18237118 + PB1D10 SINE Alu 6 108 -9 7 1609 477 0 0 0 chr5 134300141 134300194 -18237065 + (TAA)n Simple_repeat Simple_repeat 2 54 0 7 1609 317 319 67 6 chr5 134300411 134300591 -18236668 - L1MA5 LINE L1 -279 6021 5831 7 1609 1208 164 22 22 chr5 134300608 134300833 -18236426 - URR1B DNA MER1_type 0 225 1 7 1609 1524 185 76 12 chr5 134300872 134301200 -18236059 + ORR1D1 LTR MaLR 1 349 -25 7 1609 356 216 0 10 chr5 134301411 134301509 -18235750 + GA-rich Low_complexity Low_complexity 2 98 0 7 1609 551 226 0 0 chr5 134301522 134301628 -18235631 + B4 SINE B4 121 226 -66 7 1609 768 271 17 6 chr5 134301629 134301807 -18235452 + B3A SINE B2 1 180 -18 7 1609 201 213 0 0 chr5 134301826 134301873 -18235386 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1609 225 0 0 0 chr5 134302118 134302143 -18235116 + (TG)n Simple_repeat Simple_repeat 2 26 0 7 1609 219 218 0 0 chr5 134302153 134302208 -18235051 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 1609 447 307 6 0 chr5 134302229 134302408 -18234851 + (TG)n Simple_repeat Simple_repeat 1 180 0 7 1609 1824 209 45 10 chr5 134302593 134302994 -18234265 + MTD LTR MaLR 4 418 -1 7 1609 521 278 185 22 chr5 134303050 134303282 -18233977 + MTD LTR MaLR 136 405 -14 7 1609 635 318 9 9 chr5 134303569 134303788 -18233471 - Lx8 LINE L1 -235 7238 7020 7 1609 758 234 25 20 chr5 134303821 134304040 -18233219 + B3A SINE B2 3 211 -5 7 1609 895 215 30 25 chr5 134304629 134304829 -18232430 + B4 SINE B4 84 284 -8 7 1609 952 174 0 16 chr5 134304885 134305140 -18232119 + GA-rich Low_complexity Low_complexity 1 250 0 7 1609 515 207 26 18 chr5 134305177 134305290 -18231969 - B3A SINE B2 -84 114 1 7 1609 350 346 5 49 chr5 134305408 134305593 -18231666 + B3A SINE B2 15 191 -7 7 1609 485 248 34 0 chr5 134305626 134305743 -18231516 + B3A SINE B2 40 160 -38 7 1609 405 0 0 0 chr5 134305747 134305792 -18231467 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1609 2062 151 34 42 chr5 134305871 134305903 -18231356 + ORR1C1 LTR MaLR 1 20 -358 7 1609 1358 81 11 16 chr5 134305903 134306083 -18231176 + B2_Mm1t SINE B2 1 181 -12 7 1609 198 0 0 0 chr5 134306083 134306105 -18231154 + (GAAA)n Simple_repeat Simple_repeat 3 24 0 7 1609 691 11 23 0 chr5 134306105 134306193 -18231066 + (GGGA)n Simple_repeat Simple_repeat 3 92 0 7 1609 2062 151 34 42 chr5 134306200 134306548 -18230711 + ORR1C1 LTR MaLR 21 378 0 7 1609 575 293 170 22 chr5 134307147 134307458 -18229801 + MTD LTR MaLR 1 357 -62 7 1609 270 175 38 0 chr5 134307864 134307944 -18229315 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 7 1609 348 24 0 0 chr5 134308061 134308102 -18229157 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1609 526 228 9 16 chr5 134308469 134308785 -18228474 + (TATATG)n Simple_repeat Simple_repeat 1 314 0 7 1609 1089 250 58 6 chr5 134308836 134309166 -18228093 - Tigger13a DNA MER2_type -274 497 151 7 1609 314 191 44 0 chr5 134309393 134309461 -18227798 + B4 SINE B4 1 71 -221 7 1609 1224 51 23 6 chr5 134309469 134309645 -18227614 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 7 1609 267 203 0 0 chr5 134309645 134309709 -18227550 + GA-rich Low_complexity Low_complexity 1 64 0 7 1609 824 163 8 0 chr5 134309712 134309841 -18227418 + B3 SINE B2 1 130 -86 7 1609 498 75 0 0 chr5 134309880 134309947 -18227312 + (GGGA)n Simple_repeat Simple_repeat 4 70 0 7 1609 693 241 14 7 chr5 134309952 134310098 -18227161 + B1_Mur1 SINE Alu 3 149 0 7 1609 839 251 5 5 chr5 134310125 134310313 -18226946 + B4 SINE B4 99 286 -6 7 1609 244 277 119 12 chr5 134311024 134311108 -18226151 - ZP3AR Satellite Satellite -75 137 45 7 1609 510 31 0 0 chr5 134311181 134311245 -18226014 + (TTGG)n Simple_repeat Simple_repeat 2 65 0 7 1609 219 69 0 0 chr5 134311249 134311278 -18225981 + (TG)n Simple_repeat Simple_repeat 1 29 0 7 1609 195 100 0 0 chr5 134311286 134311316 -18225943 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1609 521 290 0 8 chr5 134311320 134311445 -18225814 - RSINE1 SINE B4 -28 137 14 7 1609 362 283 76 12 chr5 134311537 134311672 -18225587 + MLT1A1 LTR MaLR 1 144 -264 7 1609 326 250 0 36 chr5 134311954 134312037 -18225222 + B4 SINE B4 17 96 -196 7 1609 451 207 58 103 chr5 134312052 134312208 -18225051 + Lx8 LINE L1 6879 7027 -446 7 1609 3828 170 16 6 chr5 134312236 134312921 -18224338 + RLTR17 LTR ERVK 1 692 0 7 1609 702 262 193 18 chr5 134312922 134313249 -18224010 + Lx8 LINE L1 7053 7436 -37 7 1609 352 306 133 6 chr5 134313273 134313454 -18223805 + B4 SINE B4 84 287 -5 7 1609 1894 144 113 3 chr5 134313605 134313933 -18223326 + ORR1B2 LTR MaLR 4 367 0 7 1609 289 68 0 0 chr5 134315050 134315094 -18222165 + RLTR16 LTR ERVK 5 48 -457 7 1609 225 0 0 0 chr5 134315094 134315119 -18222140 + (T)n Simple_repeat Simple_repeat 1 25 0 7 1609 416 215 0 0 chr5 134316852 134316931 -18220328 + B1F1 SINE Alu 67 145 -4 7 1609 350 241 0 12 chr5 134317153 134317233 -18220026 - ID4_ SINE ID 0 83 5 7 1609 21 36 0 0 chr5 134318485 134318513 -18218746 + GC_rich Low_complexity Low_complexity 1 28 0 7 1609 2097 178 47 9 chr5 134318533 134318894 -18218365 + RLTR16 LTR ERVK 34 413 -92 7 1609 446 0 19 0 chr5 134318894 134318948 -18218311 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1609 2097 178 47 9 chr5 134318948 134319029 -18218230 + RLTR16 LTR ERVK 414 492 -13 7 1609 345 189 26 26 chr5 134319026 134319102 -18218157 + RLTR16 LTR ERVK 430 505 0 7 1609 423 98 0 0 chr5 134319113 134319174 -18218085 + (TG)n Simple_repeat Simple_repeat 2 62 0 7 1609 672 258 78 18 chr5 134319219 134319385 -18217874 - B4A SINE B4 -16 276 101 7 1609 879 232 19 19 chr5 134319432 134319639 -18217620 - ORR1D2 LTR MaLR -163 207 1 7 1609 805 207 29 129 chr5 134319673 134319984 -18217275 + B4A SINE B4 1 280 -12 7 1609 281 175 32 0 chr5 134320014 134320077 -18217182 + (CATG)n Simple_repeat Simple_repeat 1 65 0 7 1609 477 0 0 0 chr5 134320721 134320774 -18216485 + (GA)n Simple_repeat Simple_repeat 2 54 0 8 1609 710 270 63 11 chr5 134321050 134321241 -18216018 - ID_B1 SINE B4 -19 205 5 8 1609 350 271 83 0 chr5 134321644 134321740 -18215519 - Tigger7 DNA MER2_type -2191 300 197 8 1609 955 236 112 26 chr5 134321922 134322227 -18215032 + RMER15 LTR ERVL 245 575 0 8 1609 668 297 71 13 chr5 134322244 134322483 -18214776 - Tigger7 DNA MER2_type -2232 259 7 8 1609 596 305 77 82 chr5 134322685 134323088 -18214171 + MTD LTR MaLR 5 405 -14 8 1609 619 241 51 0 chr5 134323129 134323266 -18213993 - B1F SINE Alu -5 144 1 8 1609 340 333 65 0 chr5 134323538 134323646 -18213613 + B1F1 SINE Alu 3 117 -32 8 1609 251 319 41 75 chr5 134323646 134323684 -18213575 + ID_B1 SINE B4 84 224 0 8 1609 265 308 25 17 chr5 134323904 134324023 -18213236 - RMER15 LTR ERVL -5 570 451 8 1609 327 316 10 0 chr5 134324853 134324951 -18212308 + MLT2B3 LTR ERVL 2 100 -454 8 1609 2475 146 37 15 chr5 134325342 134325752 -18211507 - MTC LTR MaLR -2 419 1 8 1609 1290 260 87 21 chr5 134325861 134326286 -18210973 - Lx8 LINE L1 0 7473 7021 8 1609 417 66 0 0 chr5 134326373 134326434 -18210825 + (CTTG)n Simple_repeat Simple_repeat 2 62 0 8 1609 389 103 0 14 chr5 134326694 134326763 -18210496 + (CATA)n Simple_repeat Simple_repeat 4 71 0 8 1609 182 399 28 38 chr5 134327163 134327374 -18209885 + L4 LINE RTE 1628 1836 -193 8 1609 483 18 0 0 chr5 134327454 134327510 -18209749 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1609 327 262 12 12 chr5 134327533 134327614 -18209645 - B4 SINE B4 -76 216 136 8 1609 432 288 29 29 chr5 134327747 134327883 -18209376 + RMER20B LTR ERVK 1 136 -491 8 1609 423 0 0 0 chr5 134327960 134328007 -18209252 + (CA)n Simple_repeat Simple_repeat 2 48 0 8 1609 290 258 31 77 chr5 134328909 134329084 -18208175 - L1M6 LINE L1 -999 1264 1144 8 1609 409 241 0 0 chr5 134329357 134329444 -18207815 + ID_B1 SINE B4 136 222 -2 8 1609 192 97 0 0 chr5 134329627 134329658 -18207601 + (CAAAAA)n Simple_repeat Simple_repeat 3 33 0 8 1609 1539 188 24 94 chr5 134330010 134330235 -18207024 - MTD LTR MaLR 0 419 207 8 1609 4846 42 0 0 chr5 134330235 134330801 -18206458 - L1Md_T LINE L1 0 6582 6017 8 1609 1539 199 34 86 chr5 134330801 134330976 -18206283 - MTD LTR MaLR -213 206 6 8 1609 1033 235 53 4 chr5 134330981 134331225 -18206034 + B4A SINE B4 37 292 0 8 1609 402 211 0 0 chr5 134331228 134331337 -18205922 + (CA)n Simple_repeat Simple_repeat 2 110 0 8 1609 816 256 39 96 chr5 134331516 134331651 -18205608 - B4 SINE B4 -27 265 123 8 1609 1043 174 109 5 chr5 134331651 134331853 -18205406 - URR1A DNA MER1_type -3 223 1 8 1609 816 256 39 96 chr5 134331853 134331998 -18205261 - B4 SINE B4 -170 122 2 8 1609 1262 208 7 13 chr5 134333072 134333417 -18203842 - ZP3AR Satellite Satellite -13 342 1 8 1609 262 355 8 68 chr5 134333422 134333540 -18203719 - ID_B1 SINE B4 -31 193 83 8 1609 1780 180 92 9 chr5 134333717 134334054 -18203205 + MTEa LTR MaLR 6 370 -9 8 1609 352 245 108 81 chr5 134334073 134334184 -18203075 + MLT1A LTR MaLR 34 147 -227 8 1609 345 299 147 32 chr5 134334723 134334941 -18202318 - MLT1J LTR MaLR -2 510 268 8 1609 966 260 48 124 chr5 134335074 134335535 -18201724 - RLTR23 LTR ERV1 0 430 5 8 1609 722 286 44 12 chr5 134336312 134336499 -18200760 - B3 SINE B2 -11 205 30 8 1609 680 249 52 11 chr5 134336509 134336695 -18200564 - B3A SINE B2 -5 211 14 8 1609 276 213 0 62 chr5 134336713 134336778 -18200481 + MIRm SINE MIR 216 276 0 8 1609 840 290 18 14 chr5 134336846 134337122 -18200137 + B4A SINE B4 2 278 -14 8 1609 538 240 0 0 chr5 134337407 134337507 -18199752 - B4 SINE B4 -78 214 115 8 1609 204 40 0 0 chr5 134337507 134337532 -18199727 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 8 1609 850 172 14 0 chr5 134337553 134337698 -18199561 - B1_Mur2 SINE Alu 0 149 3 8 1609 792 73 47 24 chr5 134337819 134337988 -18199271 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 8 1609 713 94 46 29 chr5 134338019 134338194 -18199065 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 8 1609 536 42 0 14 chr5 134338221 134338293 -18198966 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 8 1609 285 381 19 71 chr5 134338384 134338692 -18198567 - MT2A LTR ERVL -137 396 105 8 1609 359 41 20 0 chr5 134338983 134339032 -18198227 + (TATG)n Simple_repeat Simple_repeat 2 51 0 8 1609 382 205 13 13 chr5 134339105 134339184 -18198075 - B1_Mus1 SINE Alu -57 91 13 8 1609 384 143 0 0 chr5 134339928 134339998 -18197261 + (TG)n Simple_repeat Simple_repeat 2 71 0 8 1609 930 263 34 111 chr5 134340006 134340331 -18196928 - RMER15 LTR ERVL -3 572 273 8 1609 991 236 70 26 chr5 134340479 134340749 -18196510 - B4A SINE B4 -8 284 3 8 1609 314 242 70 0 chr5 134340897 134340990 -18196269 + B1F SINE Alu 10 116 -1 8 1609 602 240 0 11 chr5 134340990 134341167 -18196092 + GA-rich Low_complexity Low_complexity 1 175 0 8 1609 419 310 29 6 chr5 134341199 134341374 -18195885 + GA-rich Low_complexity Low_complexity 1 179 0 8 1609 298 364 84 40 chr5 134341390 134341513 -18195746 + MLT1C LTR MaLR 181 310 -157 8 1609 1083 270 72 3 chr5 134341513 134341844 -18195415 - ORR1E LTR MaLR -2 357 4 8 1609 298 364 84 40 chr5 134341844 134341995 -18195264 + MLT1C LTR MaLR 311 467 0 8 1609 274 228 39 20 chr5 134342593 134342694 -18194565 + PB1D10 SINE Alu 44 149 0 8 1609 627 71 0 0 chr5 134342733 134342818 -18194441 + (GGGA)n Simple_repeat Simple_repeat 1 85 0 8 1609 917 230 84 27 chr5 134343322 134343585 -18193674 + B4 SINE B4 1 278 -14 8 1609 363 256 46 79 chr5 134343666 134343864 -18193395 - MTE2a LTR MaLR -17 362 158 8 1609 1148 281 100 18 chr5 134344919 134345300 -18191959 + MTD LTR MaLR 8 419 0 8 1609 763 278 120 30 chr5 134345301 134345450 -18191809 + B4A SINE B4 38 195 -97 8 1609 447 19 0 0 chr5 134345450 134345502 -18191757 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1609 324 0 0 0 chr5 134345502 134345537 -18191722 + (GA)n Simple_repeat Simple_repeat 1 36 0 8 1609 763 278 120 30 chr5 134345537 134345620 -18191639 + B4A SINE B4 196 291 -1 8 1609 279 221 45 71 chr5 134345957 134346069 -18191190 + RMER15 LTR ERVL 61 169 -406 8 1609 492 296 164 45 chr5 134346055 134346324 -18190935 + RMER15 LTR ERVL 275 575 0 8 1609 802 252 78 0 chr5 134347030 134347236 -18190023 + ID_B1 SINE B4 2 223 -1 8 1609 1298 260 141 79 chr5 134347794 134348290 -18188969 - RMER15 LTR ERVL -14 561 35 8 201 1119 232 106 35 chr5 134348461 134348876 -18188383 + RMER15 LTR ERVL 39 574 -1 8 1610 413 213 30 69 chr5 134348876 134348977 -18188282 + PB1D10 SINE Alu 18 114 -3 8 1610 212 105 33 50 chr5 134349005 134349065 -18188194 + GA-rich Low_complexity Low_complexity 3 61 0 8 1610 6075 112 55 7 chr5 134349162 134350074 -18187185 + RMER17B LTR ERVK 1 956 -2 8 1610 663 238 82 11 chr5 134350337 134350520 -18186739 + B3A SINE B2 3 198 0 8 1610 511 267 8 41 chr5 134350563 134350684 -18186575 + B4 SINE B4 44 160 -132 8 1610 185 321 93 23 chr5 134351271 134351357 -18185902 + MIRb SINE MIR 55 146 -122 8 1610 23 0 0 0 chr5 134351573 134351596 -18185663 + AT_rich Low_complexity Low_complexity 1 23 0 8 1610 673 306 29 62 chr5 134352508 134352752 -18184507 - B4 SINE B4 -8 284 49 8 1610 866 35 0 9 chr5 134352804 134352919 -18184340 + (TC)n Simple_repeat Simple_repeat 1 114 0 8 1610 826 314 24 0 chr5 134354219 134354426 -18182833 - B4 SINE B4 0 292 81 8 1610 5375 179 2 8 chr5 134354464 134355361 -18181898 - Lx5 LINE L1 -11 7039 6148 8 1610 2785 138 15 74 chr5 134355372 134355998 -18181261 + Lx5 LINE L1 5525 6119 -931 8 1610 318 222 0 40 chr5 134356001 134356076 -18181183 - B4 SINE B4 -207 85 14 8 1610 472 111 210 0 chr5 134356078 134356159 -18181100 - URR1B DNA MER1_type 0 225 128 8 1610 252 230 16 41 chr5 134356862 134356935 -18180324 + PB1D10 SINE Alu 32 111 -16 8 1610 270 143 0 0 chr5 134356942 134356991 -18180268 + (GGGAGA)n Simple_repeat Simple_repeat 6 54 0 8 1610 638 303 21 0 chr5 134356992 134357180 -18180079 + B3A SINE B2 1 192 -6 8 1610 532 304 146 16 chr5 134357208 134357462 -18179797 + B4 SINE B4 4 290 -2 8 1610 2247 206 41 39 chr5 134357580 134358032 -18179227 + RMER15 LTR ERVL 27 486 -89 8 1610 2044 138 12 3 chr5 134358032 134358351 -18178908 + ORR1A3 LTR MaLR 5 326 0 8 1610 2247 206 41 39 chr5 134358351 134358387 -18178872 + RMER15 LTR ERVL 487 516 -59 8 1610 441 0 0 0 chr5 134358416 134358465 -18178794 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1610 930 267 30 30 chr5 134358845 134359075 -18178184 + B4A SINE B4 2 231 -61 8 1610 562 300 7 7 chr5 134359075 134359216 -18178043 + RSINE1 SINE B4 3 143 -22 8 1610 235 327 68 85 chr5 134359082 134359259 -18178000 + B2_Mm2 SINE B2 10 183 -12 8 1610 210 71 0 0 chr5 134359368 134359396 -18177863 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 8 1610 478 328 51 11 chr5 134359427 134359603 -18177656 - B4A SINE B4 -5 287 105 8 1610 268 273 0 0 chr5 134359613 134359668 -18177591 + RMER15 LTR ERVL 5 59 -516 8 1610 2192 209 81 81 chr5 134359702 134360243 -18177016 + RMER15 LTR ERVL 34 574 -1 8 1610 234 0 0 0 chr5 134360381 134360407 -18176852 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1610 383 121 0 39 chr5 134360451 134360554 -18176705 + GA-rich Low_complexity Low_complexity 2 100 0 8 1610 662 287 6 52 chr5 134360554 134360727 -18176532 - B3A SINE B2 -33 165 1 8 1610 347 106 15 0 chr5 134360851 134360917 -18176342 + (CAGA)n Simple_repeat Simple_repeat 2 68 0 8 1610 802 297 75 39 chr5 134361500 134361700 -18175559 + B4 SINE B4 3 210 -82 8 1610 698 246 38 28 chr5 134361700 134361913 -18175346 + B3 SINE B2 2 216 0 8 1610 802 297 75 39 chr5 134361913 134361992 -18175267 + B4 SINE B4 211 292 0 8 1610 189 107 0 0 chr5 134362509 134362537 -18174722 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 8 1610 1158 278 7 35 chr5 134362545 134362828 -18174431 + B4A SINE B4 1 275 -17 8 1610 290 26 0 25 chr5 134362831 134362871 -18174388 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1610 297 299 96 115 chr5 134362927 134363135 -18174124 + B4A SINE B4 87 290 -2 8 1610 290 67 0 22 chr5 134363162 134363208 -18174051 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1610 907 263 47 60 chr5 134363551 134363600 -18173659 + ORR1E LTR MaLR 1 47 -312 8 1610 543 277 67 29 chr5 134363600 134363808 -18173451 - B3 SINE B2 0 216 1 9 1610 907 263 47 60 chr5 134363808 134364122 -18173137 + ORR1E LTR MaLR 48 359 0 8 1610 709 253 6 24 chr5 134364759 134364929 -18172330 - MTC-int LTR MaLR -715 543 377 9 1610 282 152 258 0 chr5 134364976 134365042 -18172217 - ID4 SINE ID 0 83 1 9 1610 431 301 10 0 chr5 134365042 134365145 -18172114 - ZP3AR Satellite Satellite -64 148 45 9 1610 210 207 0 0 chr5 134365187 134365245 -18172014 + (TA)n Simple_repeat Simple_repeat 2 59 0 9 1610 459 307 57 21 chr5 134365256 134365396 -18171863 - B1F SINE Alu -3 146 2 9 1610 233 222 18 18 chr5 134365434 134365489 -18171770 - MLT1A1 LTR MaLR -12 396 342 9 1610 360 127 111 14 chr5 134365712 134365784 -18171475 + HAL1-3A_ME LINE L1 1949 2027 -831 9 1610 213 214 0 0 chr5 134365790 134365832 -18171427 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1610 315 0 0 0 chr5 134366312 134366347 -18170912 + (TC)n Simple_repeat Simple_repeat 2 36 0 9 1610 325 327 49 61 chr5 134366958 134367121 -18170138 + B4 SINE B4 2 162 -130 9 1610 305 125 0 18 chr5 134367515 134367572 -18169687 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1610 843 312 14 35 chr5 134367600 134367721 -18169538 - B4A SINE B4 -4 288 174 9 1610 3091 129 45 10 chr5 134367721 134368230 -18169029 - RLTR11A2 LTR ERVK 0 527 1 9 1610 843 312 14 35 chr5 134368230 134368397 -18168862 - B4A SINE B4 -119 173 6 9 1610 2882 217 74 81 chr5 134368500 134369470 -18167789 - RMER17B LTR ERVK -44 864 1 9 1610 1166 209 40 14 chr5 134369668 134369891 -18167368 - B4 SINE B4 -27 265 37 9 1610 679 262 9 40 chr5 134369891 134370109 -18167150 + MTEa LTR MaLR 1 187 -234 9 1610 662 191 15 30 chr5 134370111 134370246 -18167013 + B1_Mur1 SINE Alu 1 133 -16 9 1610 699 106 24 8 chr5 134370267 134370391 -18166868 + (GGGA)n Simple_repeat Simple_repeat 1 126 0 9 1610 914 221 80 10 chr5 134370391 134370611 -18166648 + MTEa LTR MaLR 168 418 -1 9 1610 295 324 14 0 chr5 134370695 134370769 -18166490 + RSINE1 SINE B4 20 94 -71 9 1610 678 288 27 13 chr5 134371270 134371475 -18165784 - B3A SINE B2 -2 214 15 9 1610 3905 246 40 38 chr5 134371481 134372062 -18165197 + RCHARR1 DNA MER1_type 2 590 -384 9 1610 1830 65 35 75 chr5 134372062 134372344 -18164915 + L1_Mus2 LINE L1 6292 6562 -4 9 1610 3905 246 40 38 chr5 134372344 134372732 -18164527 + RCHARR1 DNA MER1_type 591 973 -1 9 1610 920 278 3 38 chr5 134372868 134373156 -18164103 - B4 SINE B4 -14 278 1 9 1610 1670 251 115 27 chr5 134373248 134373357 -18163902 - Lx8 LINE L1 -25 7448 7328 9 1610 2315 100 12 39 chr5 134373357 134373690 -18163569 + ORR1A3 LTR MaLR 3 326 0 9 1610 1670 251 115 27 chr5 134373690 134374136 -18163123 - Lx8 LINE L1 -146 7327 6844 9 1610 442 270 51 17 chr5 134374421 134374538 -18162721 + Lx8 LINE L1 7140 7260 -213 9 1610 259 304 0 51 chr5 134374605 134374723 -18162536 - L1MC4 LINE L1 -524 7518 7407 9 1610 368 269 0 0 chr5 134374788 134374855 -18162404 + ID2 SINE ID 11 77 -6 9 1610 270 296 11 80 chr5 134374790 134374878 -18162381 + B4 SINE B4 13 94 -198 9 1610 624 308 74 37 chr5 134374872 134375061 -18162198 + B4A SINE B4 6 201 -91 9 1610 1011 271 48 84 chr5 134375050 134375473 -18161786 + MTE2a LTR MaLR 10 406 -13 9 1610 228 35 0 0 chr5 134375867 134375896 -18161363 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1610 460 250 62 35 chr5 134375949 134376094 -18161165 + B1F SINE Alu 1 149 0 9 1610 210 216 0 73 chr5 134376114 134376169 -18161090 + ID4 SINE ID 8 58 -25 9 1610 1425 117 8 10 chr5 134376122 134376406 -18160853 + ZP3AR Satellite Satellite 1 283 0 9 1610 472 188 0 0 chr5 134377305 134377374 -18159885 + URR1B DNA MER1_type 1 69 -156 9 1610 3313 178 30 24 chr5 134377374 134378012 -18159247 + RLTR26 LTR ERVK 1 642 0 9 1610 849 161 6 83 chr5 134378017 134378186 -18159073 + URR1B DNA MER1_type 70 225 0 9 1610 665 271 35 29 chr5 134378188 134378359 -18158900 - B4A SINE B4 -118 174 3 9 1610 523 341 71 0 chr5 134378387 134378557 -18158702 + ORR1E LTR MaLR 1 182 -177 9 1610 1976 127 16 10 chr5 134378564 134378874 -18158385 + ORR1A4 LTR MaLR 18 329 0 9 1610 577 237 0 0 chr5 134378884 134378998 -18158261 - RSINE1 SINE B4 -50 115 2 9 1610 213 214 0 0 chr5 134379010 134379052 -18158207 + (TG)n Simple_repeat Simple_repeat 1 42 0 9 1610 630 245 142 46 chr5 134379058 134379319 -18157940 - B4 SINE B4 -2 290 5 9 1610 189 74 0 0 chr5 134379355 134379382 -18157877 + (GGTTG)n Simple_repeat Simple_repeat 2 28 0 9 1610 547 266 16 8 chr5 134379382 134379507 -18157752 - ID_B1 SINE B4 -9 215 90 9 1610 342 237 0 116 chr5 134379658 134379787 -18157472 - Charlie22a DNA MER1_type -301 190 77 9 1610 251 310 52 37 chr5 134380011 134380145 -18157114 - MIRb SINE MIR -53 215 80 9 1610 411 228 0 0 chr5 134380148 134380227 -18157032 + B3A SINE B2 3 81 -117 9 1610 399 73 0 0 chr5 134380270 134380325 -18156934 + (CA)n Simple_repeat Simple_repeat 1 55 0 9 1610 351 146 19 7 chr5 134380419 134380490 -18156769 - MTE2a LTR MaLR -11 368 282 9 1610 4296 141 26 38 chr5 134380545 134380595 -18156664 - RMER6A LTR ERVK 0 756 714 9 1610 1022 78 6 50 chr5 134380595 134380756 -18156503 + L1_Mus2 LINE L1 6413 6566 0 9 1610 4296 141 26 38 chr5 134380756 134381099 -18156160 - RMER6A LTR ERVK -43 713 386 9 1610 414 0 0 0 chr5 134381099 134381145 -18156114 + (TC)n Simple_repeat Simple_repeat 2 47 0 9 1610 4296 141 26 38 chr5 134381145 134381515 -18155744 - RMER6A LTR ERVK -371 385 2 9 1610 705 264 77 11 chr5 134381521 134381782 -18155477 - L1MB5 LINE L1 -337 5837 5560 9 1610 716 330 64 7 chr5 134382050 134382331 -18154928 - RMER15 LTR ERVL 0 575 279 9 1610 555 264 171 96 chr5 134382588 134382827 -18154432 + MTE2b LTR MaLR 1 257 -122 9 1610 1019 188 26 88 chr5 134382827 134383085 -18154174 + Lx4A LINE L1 6770 7055 -3 9 1610 684 221 0 0 chr5 134383093 134383215 -18154044 + MTE2b LTR MaLR 255 376 -3 9 1610 297 0 0 0 chr5 134383562 134383595 -18153664 + (CA)n Simple_repeat Simple_repeat 1 33 0 9 1610 357 253 76 103 chr5 134384003 134384188 -18153071 - MTEa LTR MaLR -22 357 178 9 1610 707 250 57 23 chr5 134384226 134384402 -18152857 + B3A SINE B2 1 182 -16 9 1610 352 315 15 44 chr5 134384442 134384578 -18152681 + B4 SINE B4 3 134 -158 9 1610 206 305 35 35 chr5 134384729 134384814 -18152445 + L2b LINE L2 3291 3375 0 9 1610 654 232 68 27 chr5 134384895 134385041 -18152218 + B3A SINE B2 1 152 -46 9 1610 342 0 0 0 chr5 134385045 134385083 -18152176 + (CA)n Simple_repeat Simple_repeat 1 38 0 9 1610 375 278 83 76 chr5 134385094 134385112 -18152147 + ID_B1 SINE B4 78 222 -2 9 1610 677 198 95 0 chr5 134385112 134385238 -18152021 + B1_Mur1 SINE Alu 10 147 -2 9 1610 194 301 39 52 chr5 134385311 134385388 -18151871 - L4 LINE RTE -1697 332 257 9 1610 754 303 78 15 chr5 134385791 134386059 -18151200 - ORR1E LTR MaLR -10 349 65 9 1610 443 326 23 0 chr5 134386058 134386190 -18151069 + B4A SINE B4 5 139 -153 9 1610 689 329 66 23 chr5 134386185 134386443 -18150816 + RMER15 LTR ERVL 262 530 -45 9 1610 486 0 0 0 chr5 134386444 134386498 -18150761 + (TC)n Simple_repeat Simple_repeat 2 55 0 9 1610 369 0 0 0 chr5 134386498 134386538 -18150721 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1610 418 239 0 0 chr5 134386622 134386710 -18150549 - ORR1E LTR MaLR -270 89 2 9 1610 227 203 17 0 chr5 134387285 134387344 -18149915 + (TG)n Simple_repeat Simple_repeat 1 60 0 9 1610 250 250 37 0 chr5 134387388 134387524 -18149735 + (TG)n Simple_repeat Simple_repeat 1 141 0 9 1610 200 273 28 0 chr5 134387560 134387703 -18149556 + (TG)n Simple_repeat Simple_repeat 1 147 0 9 1610 208 300 0 0 chr5 134387719 134387769 -18149490 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1610 318 342 18 60 chr5 134387772 134387940 -18149319 - RSINE1 SINE B4 -2 163 3 9 1610 549 261 9 0 chr5 134387965 134388076 -18149183 - ID_B1 SINE B4 -107 117 6 9 1610 766 247 39 0 chr5 134388242 134388420 -18148839 + B3A SINE B2 1 185 -13 9 1610 29 47 0 0 chr5 134388426 134388469 -18148790 + AT_rich Low_complexity Low_complexity 1 43 0 9 1610 961 243 32 32 chr5 134390193 134390440 -18146819 + B4 SINE B4 36 282 -10 9 1610 812 272 0 0 chr5 134390509 134390689 -18146570 + B3A SINE B2 3 182 -16 9 1610 228 288 15 29 chr5 134390924 134390992 -18146267 + B4A SINE B4 54 120 -172 9 1610 269 264 13 40 chr5 134390977 134391052 -18146207 + ZP3AR Satellite Satellite 23 95 -117 9 1610 332 266 0 0 chr5 134391053 134391132 -18146127 + ID4 SINE ID 2 80 -3 9 1610 458 91 0 13 chr5 134391271 134391349 -18145910 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 9 1610 327 134 0 107 chr5 134391617 134391692 -18145567 + ORR1A4 LTR MaLR 92 158 -171 9 1610 1651 134 50 96 chr5 134392155 134392518 -18144741 + ORR1B1 LTR MaLR 41 386 -8 9 1610 344 204 22 22 chr5 134393836 134393926 -18143333 - RMER15 LTR ERVL -62 513 424 9 1610 259 282 70 35 chr5 134394051 134394165 -18143094 - RMER15 LTR ERVL -445 130 13 9 1610 372 292 50 38 chr5 134394227 134394387 -18142872 - RMER15 LTR ERVL -115 460 299 9 1610 3003 145 41 18 chr5 134395964 134396476 -18140783 - RLTR28 LTR ERVL 0 524 1 9 1610 781 285 81 0 chr5 134396887 134397133 -18140126 + B4A SINE B4 2 267 -25 9 1610 285 169 0 0 chr5 134397198 134397257 -18140002 + (TATG)n Simple_repeat Simple_repeat 2 60 0 9 1610 1100 168 0 0 chr5 134397613 134397798 -18139461 + ZP3AR Satellite Satellite 7 191 -21 9 1610 231 343 14 0 chr5 134397757 134397827 -18139432 + B4 SINE B4 3 73 -219 9 1610 1455 266 63 28 chr5 134397836 134398342 -18138917 + L1MB4 LINE L1 5651 6174 -6 9 1610 1470 238 12 15 chr5 134398388 134398717 -18138542 - MTEa LTR MaLR 0 379 52 9 1610 645 237 17 61 chr5 134398721 134398901 -18138358 + B2_Mm2 SINE B2 2 173 -22 9 1610 384 127 0 0 chr5 134398908 134398971 -18138288 - MTEa LTR MaLR -316 63 1 9 1610 395 236 64 0 chr5 134399021 134399131 -18138128 + PB1D10 SINE Alu 1 117 0 9 1610 237 212 50 10 chr5 134399131 134399231 -18138028 + (TA)n Simple_repeat Simple_repeat 1 104 0 9 1610 348 64 0 0 chr5 134399260 134399307 -18137952 + (TC)n Simple_repeat Simple_repeat 1 47 0 9 1610 641 257 51 39 chr5 134399311 134399489 -18137770 + B3A SINE B2 3 182 -16 9 1610 239 272 47 47 chr5 134399559 134399644 -18137615 + ID_B1 SINE B4 73 157 -67 1 1610 412 195 0 13 chr5 134399568 134399646 -18137613 + PB1D9 SINE Alu 5 81 -39 1 1610 336 127 0 0 chr5 134399647 134399702 -18137557 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1610 371 314 50 28 chr5 134399903 134400083 -18137176 + ORR1E LTR MaLR 1 184 -175 1 1610 1063 264 67 39 chr5 134400530 134400606 -18136653 - B4 SINE B4 0 292 226 1 1610 234 0 0 0 chr5 134400606 134400632 -18136627 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1610 1063 264 67 39 chr5 134400632 134400839 -18136420 - B4 SINE B4 -67 225 2 1 1610 694 284 34 49 chr5 134401822 134402026 -18135233 + B3 SINE B2 3 203 -13 1 1610 326 171 14 0 chr5 134402026 134402096 -18135163 + (TA)n Simple_repeat Simple_repeat 2 72 0 1 1610 34 55 0 0 chr5 134402221 134402276 -18134983 + AT_rich Low_complexity Low_complexity 1 55 0 1 1610 1494 241 59 49 chr5 134402855 134403343 -18133916 + Lx8 LINE L1 6730 7222 -251 1 1610 438 79 0 0 chr5 134403467 134403530 -18133729 + (TTGG)n Simple_repeat Simple_repeat 2 64 0 1 1610 799 210 17 29 chr5 134403537 134403709 -18133550 - B3 SINE B2 -46 170 1 1 1610 302 280 12 40 chr5 134404068 134404185 -18133074 + PB1D10 SINE Alu 1 106 -14 1 1610 1241 11 16 33 chr5 134404188 134404371 -18132888 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1 1610 275 209 0 0 chr5 134404856 134404923 -18132336 + (GGTTG)n Simple_repeat Simple_repeat 2 68 0 1 1610 888 229 38 25 chr5 134404982 134405219 -18132040 - B4 SINE B4 -50 242 3 1 1610 1222 198 132 39 chr5 134405438 134405801 -18131458 + MTD LTR MaLR 8 404 -15 1 1610 346 253 109 24 chr5 134405846 134406034 -18131225 + L1M5 LINE L1 5256 5461 -851 1 1610 496 254 34 0 chr5 134406333 134406451 -18130808 + RSINE1 SINE B4 44 165 0 1 1610 1410 176 111 48 chr5 134406750 134407203 -18130056 + RMER17B LTR ERVK 1 439 -519 1 1610 2138 213 45 44 chr5 134407189 134407782 -18129477 + RMER13B LTR ERVK 311 904 -4 1 1610 294 355 65 23 chr5 134407805 134408021 -18129238 + B4A SINE B4 68 292 0 1 1610 277 217 12 12 chr5 134408031 134408115 -18129144 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 1 1610 537 228 73 67 chr5 134408163 134408342 -18128917 + B3A SINE B2 1 180 -18 1 1610 593 219 15 0 chr5 134408362 134408499 -18128760 + Lx5 LINE L1 6898 7036 -14 1 1610 261 75 0 0 chr5 134408499 134408539 -18128720 + (TAA)n Simple_repeat Simple_repeat 2 41 0 1 1610 290 262 0 35 chr5 134408555 134408642 -18128617 + CT-rich Low_complexity Low_complexity 1 84 0 1 1610 252 323 10 20 chr5 134408735 134408836 -18128423 + MTEa LTR MaLR 278 377 -2 1 1610 315 0 0 0 chr5 134409935 134409970 -18127289 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1610 764 228 91 10 chr5 134410008 134410216 -18127043 - B4 SINE B4 -67 225 1 1 1610 2543 135 42 2 chr5 134410300 134410700 -18126559 - MTC LTR MaLR -4 417 2 1 1610 543 274 94 13 chr5 134410800 134410959 -18126300 - B3A SINE B2 -25 173 2 1 1610 478 279 72 38 chr5 134411336 134411545 -18125714 + MLT1B LTR MaLR 22 237 -153 1 1610 521 285 102 42 chr5 134411546 134411762 -18125497 + B4 SINE B4 1 229 -63 1 1610 407 186 35 0 chr5 134411897 134411983 -18125276 - MTE2b LTR MaLR -290 89 1 1 1610 541 165 10 0 chr5 134412312 134412409 -18124850 + MTE2b LTR MaLR 9 106 -273 1 1610 609 349 28 34 chr5 134412411 134412737 -18124522 + MTD LTR MaLR 1 324 -95 1 1610 558 304 97 21 chr5 134412760 134413049 -18124210 - MTD LTR MaLR -107 312 2 1 1610 262 204 56 22 chr5 134413063 134413153 -18124106 + ORR1E LTR MaLR 261 353 -6 1 1610 210 221 14 58 chr5 134413156 134413295 -18123964 + (CATA)n Simple_repeat Simple_repeat 4 136 0 1 1610 392 303 20 7 chr5 134413350 134413372 -18123887 + (CATATA)n Simple_repeat Simple_repeat 2 23 0 1 1610 234 0 0 0 chr5 134413372 134413398 -18123861 + (TA)n Simple_repeat Simple_repeat 2 27 0 1 1610 392 303 20 7 chr5 134413398 134413624 -18123635 + (CATATA)n Simple_repeat Simple_repeat 1 228 0 1 1610 252 330 27 0 chr5 134413572 134413684 -18123575 + (CA)n Simple_repeat Simple_repeat 2 116 0 1 1610 672 283 106 59 chr5 134414153 134414330 -18122929 + MTD LTR MaLR 1 183 -236 1 1610 3331 200 130 56 chr5 134414330 134415175 -18122084 - RMER13B LTR ERVK 0 908 1 1 1610 672 250 65 61 chr5 134415175 134415397 -18121862 + MTD LTR MaLR 184 405 -14 1 1610 334 154 56 24 chr5 134415575 134415701 -18121558 + (CATATA)n Simple_repeat Simple_repeat 6 135 0 1 1610 510 216 22 11 chr5 134415719 134415897 -18121362 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 1 1610 454 311 46 32 chr5 134415902 134416121 -18121138 + MIRb SINE MIR 32 253 -15 1 1610 273 151 0 0 chr5 134416193 134416246 -18121013 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1610 383 350 0 0 chr5 134416248 134416345 -18120914 + RSINE1 SINE B4 69 165 0 1 1610 788 235 12 0 chr5 134416411 134416576 -18120683 + B3A SINE B2 1 166 -50 1 1610 192 111 0 0 chr5 134416576 134416612 -18120647 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1610 676 278 24 19 chr5 134416612 134416655 -18120604 + B3 SINE B2 167 209 -7 1 1610 920 246 112 19 chr5 134417193 134417540 -18119719 - MTD LTR MaLR -14 405 6 1 1610 590 289 74 44 chr5 134417580 134417783 -18119476 + B4 SINE B4 84 292 0 1 1610 778 272 60 24 chr5 134417787 134418036 -18119223 - RMER15 LTR ERVL 0 575 318 1 1610 237 275 45 84 chr5 134418072 134418227 -18119032 - RMER15 LTR ERVL -414 161 13 1 1610 378 238 75 83 chr5 134418716 134418849 -18118410 + Lx9 LINE L1 7027 7158 -486 1 1610 401 327 24 12 chr5 134419136 134419300 -18117959 + B4A SINE B4 16 181 -111 1 1610 398 252 52 9 chr5 134419660 134419776 -18117483 + MTEa LTR MaLR 1 121 -258 1 1610 462 79 0 0 chr5 134419873 134419936 -18117323 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 1610 286 319 44 0 chr5 134419973 134420086 -18117173 - BC1_Mm scRNA scRNA -34 118 1 1 1610 240 256 97 57 chr5 134420433 134420557 -18116702 + MER58B DNA MER1_type 213 341 0 1 1610 235 255 0 18 chr5 134420679 134420735 -18116524 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 1 1610 692 137 43 4 chr5 134420742 134421004 -18116255 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 1 1610 323 349 43 56 chr5 134421176 134421407 -18115852 - Lx8 LINE L1 -34 7439 7212 1 1610 256 233 17 0 chr5 134421407 134421467 -18115792 + ORR1B2 LTR MaLR 1 61 -306 1 1610 258 232 18 0 chr5 134421468 134421524 -18115735 - Lx8 LINE L1 -205 7268 7212 1 1610 1621 189 78 6 chr5 134421524 134421859 -18115400 + ORR1B2 LTR MaLR 1 359 -8 1 1610 762 261 81 53 chr5 134421903 134422150 -18115109 - Lx8 LINE L1 -307 7166 6913 1 1610 785 264 234 24 chr5 134422312 134422693 -18114566 - RMER20B LTR ERVK -39 588 128 1 1610 1268 158 47 0 chr5 134423159 134423338 -18113921 - URR1A DNA MER1_type 0 226 41 1 1610 348 43 0 0 chr5 134423338 134423384 -18113875 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1610 1268 158 47 0 chr5 134423384 134423419 -18113840 - URR1A DNA MER1_type -186 40 3 1 1610 307 270 291 9 chr5 134423470 134423683 -18113576 - RMER15 LTR ERVL -2 573 301 1 1610 487 264 23 8 chr5 134423744 134423874 -18113385 + RSINE1 SINE B4 2 133 -32 1 1610 392 0 21 0 chr5 134423887 134423935 -18113324 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1610 369 0 0 0 chr5 134423968 134424009 -18113250 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1610 1969 197 5 22 chr5 134424107 134424507 -18112752 - MTD LTR MaLR -8 411 19 1 1610 425 245 47 0 chr5 134424584 134424690 -18112569 - PB1D7 SINE Alu -5 115 5 1 1610 597 179 0 0 chr5 134424722 134424845 -18112414 + (TGG)n Simple_repeat Simple_repeat 3 125 0 1 1610 522 251 16 38 chr5 134424856 134425042 -18112217 - HAL1-2a_MD LINE L1 -517 2507 2326 1 1610 553 280 0 34 chr5 134425049 134425197 -18112062 - ID_B1 SINE B4 -2 222 80 1 1610 2880 22 5 88 chr5 134425311 134425711 -18111548 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1610 29242 25 1 1 chr5 134425711 134428982 -18108277 - IAPEz-int LTR ERVK 0 6481 3210 1 1610 7402 96 75 67 chr5 134428981 134430277 -18106982 - IAPEz-int LTR ERVK -5168 1313 8 1 1610 2855 25 5 88 chr5 134430277 134430677 -18106582 - IAPLTR1_Mm LTR ERVK 0 367 1 1 1610 25 0 0 0 chr5 134431175 134431200 -18106059 + AT_rich Low_complexity Low_complexity 1 25 0 1 1610 386 264 0 0 chr5 134431339 134431426 -18105833 + B3 SINE B2 1 87 -129 1 1610 496 290 13 13 chr5 134431416 134431573 -18105686 - MTD LTR MaLR -262 157 1 1 1610 412 267 10 0 chr5 134431838 134431939 -18105320 - ZP3AR Satellite Satellite -72 140 39 1 1610 22 0 0 0 chr5 134432416 134432438 -18104821 + AT_rich Low_complexity Low_complexity 1 22 0 1 1610 2150 292 41 67 chr5 134432637 134433484 -18103775 + Lx8 LINE L1 6059 6883 -590 1 1610 275 284 0 29 chr5 134433825 134433894 -18103365 - ID4 SINE ID -11 72 6 1 1610 599 291 6 29 chr5 134433854 134434024 -18103235 - ZP3AR Satellite Satellite -21 191 26 1 1610 251 256 101 13 chr5 134434048 134434127 -18103132 + ID_B1 SINE B4 130 215 -9 1 1610 531 0 0 0 chr5 134434318 134434377 -18102882 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1610 354 245 49 0 chr5 134434904 134435006 -18102253 - PB1D7 SINE Alu 0 120 14 1 1610 323 313 29 81 chr5 134435054 134435228 -18102031 + B4A SINE B4 5 169 -123 1 1610 541 180 0 11 chr5 134435318 134435492 -18101767 + (CAGA)n Simple_repeat Simple_repeat 1 172 0 1 1610 219 36 0 0 chr5 134435511 134435539 -18101720 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 1 1610 363 23 0 0 chr5 134435568 134435612 -18101647 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 1 1610 333 47 0 0 chr5 134435641 134435684 -18101575 + (CAGA)n Simple_repeat Simple_repeat 1 43 0 1 1610 625 128 0 91 chr5 134435713 134435911 -18101348 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 1 1610 427 342 13 20 chr5 134435971 134436123 -18101136 + RSINE1 SINE B4 15 165 0 1 1610 242 155 23 0 chr5 134436181 134436231 -18101028 - B2_Mm2 SINE B2 -158 58 8 1 1610 306 0 0 0 chr5 134436436 134436470 -18100789 + (TA)n Simple_repeat Simple_repeat 2 35 0 1 1610 553 223 35 35 chr5 134436972 134437144 -18100115 - RMER15 LTR ERVL -12 563 392 1 1610 568 260 71 6 chr5 134437179 134437349 -18099910 + B3A SINE B2 1 181 -17 1 1610 186 227 0 0 chr5 134437350 134437394 -18099865 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1610 1050 215 25 5 chr5 134437798 134437999 -18099260 + B3 SINE B2 5 209 -7 1 1610 662 263 113 0 chr5 134438071 134438257 -18099002 - B4 SINE B4 -43 249 43 1 1610 629 265 37 11 chr5 134438263 134438450 -18098809 - MTE2a LTR MaLR 0 379 188 1 1610 208 296 19 0 chr5 134438534 134438588 -18098671 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1610 498 324 7 7 chr5 134438775 134438918 -18098341 + B3A SINE B2 45 187 -11 1 1610 876 151 7 27 chr5 134438934 134439084 -18098175 - B1_Mur4 SINE Alu -3 147 1 1 1610 360 0 0 0 chr5 134439455 134439495 -18097764 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1610 266 310 44 52 chr5 134439764 134439900 -18097359 - RMER15 LTR ERVL -15 560 426 1 1610 3531 152 177 1 chr5 134440119 134440831 -18096428 - RMER21B LTR ERV1 -5 837 1 1 1610 2397 151 9 57 chr5 134441082 134441524 -18095735 - MTC LTR MaLR 0 421 1 1 1610 799 268 32 28 chr5 134441750 134442000 -18095259 - MTE2a LTR MaLR 0 379 129 1 1610 2337 127 67 11 chr5 134442147 134442520 -18094739 + ORR1B1 LTR MaLR 1 394 0 1 1610 716 206 15 0 chr5 134442887 134443023 -18094236 - MTE2a LTR MaLR -241 138 1 1 1610 273 245 29 58 chr5 134443293 134443397 -18093862 + RMER15 LTR ERVL 62 162 -413 1 1610 839 270 42 9 chr5 134443452 134443669 -18093590 + RMER15 LTR ERVL 352 575 0 1 1610 292 349 34 122 chr5 134443704 134443998 -18093261 + ORR1E LTR MaLR 92 359 0 1 1610 454 189 14 0 chr5 134444340 134444414 -18092845 + 7SK RNA RNA 14 88 -243 1 1610 797 318 21 25 chr5 134444930 134445169 -18092090 + 7SK RNA RNA 91 328 -3 1 1610 396 0 0 0 chr5 134445230 134445274 -18091985 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1610 572 263 96 15 chr5 134445277 134445412 -18091847 - B3A SINE B2 -52 146 1 1 1610 840 187 118 21 chr5 134445441 134445627 -18091632 - B3 SINE B2 -12 204 1 1 1610 752 262 30 35 chr5 134445945 134446116 -18091143 + B3A SINE B2 2 173 -25 1 1610 270 0 0 0 chr5 134446116 134446146 -18091113 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1610 752 262 30 35 chr5 134446146 134446172 -18091087 + B3A SINE B2 174 198 0 1 1610 407 306 36 0 chr5 134447043 134447154 -18090105 + Lx8 LINE L1 6831 6945 -528 1 1610 605 208 0 94 chr5 134447165 134447303 -18089956 + B3A SINE B2 15 139 -59 1 1610 264 111 0 0 chr5 134447313 134447358 -18089901 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1610 721 346 53 12 chr5 134447371 134447690 -18089569 + Lx8 LINE L1 6935 7266 -207 1 1610 352 221 0 0 chr5 134447690 134447758 -18089501 + RMER15 LTR ERVL 403 470 -105 1 1610 413 236 87 92 chr5 134447854 134448010 -18089249 + ORR1E LTR MaLR 142 293 -66 1 1610 237 33 0 0 chr5 134448010 134448040 -18089219 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1610 413 236 87 92 chr5 134448040 134448056 -18089203 + ORR1E LTR MaLR 294 312 -47 1 1610 779 275 5 11 chr5 134448079 134448270 -18088989 + MTD LTR MaLR 4 193 -228 1 1610 186 133 0 0 chr5 134448270 134448300 -18088959 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1610 954 243 48 13 chr5 134448439 134448668 -18088591 + MTD LTR MaLR 169 405 -14 1 1610 515 292 91 25 chr5 134448979 134449221 -18088038 - RMER15 LTR ERVL 0 575 318 1 1610 234 282 27 40 chr5 134449286 134449360 -18087899 - RMER15 LTR ERVL -459 116 44 1 1610 635 231 111 7 chr5 134449838 134449982 -18087277 + ID_B1 SINE B4 18 176 -48 1 1610 331 283 101 0 chr5 134449999 134450098 -18087161 + B1_Mur2 SINE Alu 1 109 -40 1 1610 570 226 28 28 chr5 134450239 134450380 -18086879 + B1F SINE Alu 1 141 -8 1 1610 321 251 165 97 chr5 134450381 134450647 -18086612 - ORR1D1 LTR MaLR -44 330 58 1 1610 648 212 29 81 chr5 134450667 134450841 -18086418 + B3A SINE B2 34 198 0 1 1610 229 253 163 35 chr5 134450853 134450866 -18086393 + MT2B2 LTR ERVL 244 267 -317 1 1610 456 205 8 118 chr5 134450866 134450993 -18086266 + B1F2 SINE Alu 2 114 -35 1 1610 306 0 0 0 chr5 134450995 134451029 -18086230 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1610 1149 262 0 24 chr5 134451155 134451405 -18085854 - MTEa LTR MaLR -115 264 21 1 1610 982 237 35 4 chr5 134451972 134452201 -18085058 + B4 SINE B4 1 236 -56 1 1610 586 207 113 7 chr5 134452202 134452323 -18084936 + MTC LTR MaLR 2 137 -284 1 1610 1139 253 87 83 chr5 134452323 134452870 -18084389 + RMER13A LTR ERVK 1 556 -71 1 1610 1856 116 51 0 chr5 134453074 134453350 -18083909 + MTC LTR MaLR 132 421 0 1 1610 267 204 0 0 chr5 134453350 134453390 -18083869 + B4 SINE B4 232 271 -21 1 1610 318 50 0 0 chr5 134453391 134453431 -18083828 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1610 233 293 0 16 chr5 134453621 134453746 -18083513 + ORR1B1-int LTR MaLR 632 754 -755 1 1610 883 188 0 34 chr5 134453642 134453791 -18083468 + B1_Mur1 SINE Alu 6 149 0 1 1610 524 331 0 24 chr5 134453796 134453963 -18083296 + RSINE1 SINE B4 3 165 0 1 1610 638 202 5 0 chr5 134453969 134454194 -18083065 + (CA)n Simple_repeat Simple_repeat 1 226 0 1 1610 678 202 0 0 chr5 134454207 134454385 -18082874 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 1610 745 335 114 17 chr5 134454445 134454743 -18082516 - Charlie1a DNA MER1_type -657 798 480 1 1610 414 0 0 0 chr5 134454743 134454789 -18082470 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 1 1610 745 335 114 17 chr5 134454789 134454851 -18082408 - Charlie1a DNA MER1_type -976 479 404 1 1610 288 372 0 0 chr5 134454887 134454981 -18082278 + (TG)n Simple_repeat Simple_repeat 1 94 0 1 1610 1037 250 22 17 chr5 134455057 134455286 -18081973 + B4 SINE B4 1 230 -62 1 1610 827 265 0 39 chr5 134455286 134455490 -18081769 + B3A SINE B2 3 198 0 1 1610 308 239 60 0 chr5 134455517 134455584 -18081675 + B4 SINE B4 222 292 0 1 1610 509 262 26 39 chr5 134456037 134456192 -18081067 + RSINE1 SINE B4 2 154 -11 1 1610 831 224 0 0 chr5 134456175 134456318 -18080941 + B1_Mur1 SINE Alu 6 148 -1 1 1610 1024 136 77 0 chr5 134456519 134456688 -18080571 + B2_Mm2 SINE B2 1 182 -13 1 1610 940 129 12 0 chr5 134456688 134456858 -18080401 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 1 1610 663 48 0 0 chr5 134456858 134456940 -18080319 + (GGGA)n Simple_repeat Simple_repeat 2 84 0 1 1610 2362 199 78 14 chr5 134456992 134457477 -18079782 + MT2A LTR ERVL 18 533 0 1 1610 1040 152 118 25 chr5 134457650 134457853 -18079406 - URR1A DNA MER1_type -2 224 3 1 1610 891 269 125 72 chr5 134457900 134458261 -18078998 - MTD LTR MaLR 0 419 40 1 1610 468 252 118 0 chr5 134459820 134459939 -18077320 + RSINE1 SINE B4 11 143 -22 1 1610 231 348 81 29 chr5 134460542 134460678 -18076581 - MIRb SINE MIR -112 156 7 1 1610 22 0 0 0 chr5 134460981 134461003 -18076256 + AT_rich Low_complexity Low_complexity 1 22 0 1 1610 2591 100 97 0 chr5 134461044 134461435 -18075824 - Lx4A LINE L1 0 7058 6630 1 1610 622 177 0 225 chr5 134461441 134461463 -18075796 - B1_Mus2 SINE Alu -5 142 129 1 1610 795 122 112 22 chr5 134461463 134461597 -18075662 + B1_Mur4 SINE Alu 5 150 0 1 1610 727 177 0 225 chr5 134461597 134461756 -18075503 - B1_Mur1 SINE Alu -13 136 2 1 1610 230 254 0 63 chr5 134461756 134461785 -18075474 - MT2B LTR ERVL -343 258 234 1 1610 459 0 0 0 chr5 134462062 134462113 -18075146 + (TTG)n Simple_repeat Simple_repeat 2 52 0 1 1610 254 360 26 18 chr5 134462187 134462300 -18074959 + ZP3AR Satellite Satellite 25 138 -74 1 1610 295 273 93 80 chr5 134462258 134462409 -18074850 + ID_B1 SINE B4 2 154 -70 1 1610 314 98 0 19 chr5 134462519 134462571 -18074688 + (TCTCCC)n Simple_repeat Simple_repeat 3 53 0 1 1610 369 0 0 0 chr5 134462582 134462623 -18074636 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1610 368 298 136 24 chr5 134462656 134462907 -18074352 - B4 SINE B4 -11 281 3 1 1610 1280 236 18 43 chr5 134463144 134463472 -18073787 + MTD LTR MaLR 42 361 -58 1 1610 258 308 0 103 chr5 134463590 134463677 -18073582 - RMER21B LTR ERV1 -111 836 759 1 1610 1099 208 96 26 chr5 134463680 134463952 -18073307 - RMER21B LTR ERV1 -275 567 277 1 1610 226 213 35 128 chr5 134463997 134464083 -18073176 + ORR1D2 LTR MaLR 292 369 -1 1 1610 949 258 55 42 chr5 134464086 134464397 -18072862 - RMER15 LTR ERVL -39 536 222 1 1610 518 286 15 0 chr5 134464986 134465119 -18072140 - B1F1 SINE Alu -14 135 1 1 1610 231 242 104 15 chr5 134465121 134465188 -18072071 + MLT1A0 LTR MaLR 293 365 0 1 1610 306 0 0 0 chr5 134465580 134465614 -18071645 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1 1610 261 293 40 0 chr5 134465614 134465689 -18071570 - ID4 SINE ID -5 78 1 1 1610 304 169 30 30 chr5 134465645 134465712 -18071547 - ZP3AR Satellite Satellite -124 88 22 1 1610 521 205 133 90 chr5 134465972 134466160 -18071099 - MLT1C LTR MaLR -270 197 2 1 1610 333 0 0 0 chr5 134466209 134466246 -18071013 + (GA)n Simple_repeat Simple_repeat 1 37 0 1 1610 1232 306 3 14 chr5 134466294 134466589 -18070670 - B4A SINE B4 0 292 1 1 1610 235 250 0 0 chr5 134466601 134466649 -18070610 - L1MD3 LINE L1 -595 7400 7353 1 1610 1628 163 72 13 chr5 134466740 134467045 -18070214 + MTD LTR MaLR 1 323 -96 1 1610 201 74 0 0 chr5 134467819 134467846 -18069413 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 1 1610 552 236 27 0 chr5 134467958 134468068 -18069191 + ZP3AR Satellite Satellite 41 153 -59 1 1610 458 235 66 36 chr5 134468245 134468382 -18068877 + RMER15 LTR ERVL 1 141 -434 1 1610 457 176 58 10 chr5 134469922 134470025 -18067234 + MTD LTR MaLR 312 419 0 1 1610 195 69 0 0 chr5 134470440 134470469 -18066790 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1610 621 308 0 0 chr5 134470497 134470640 -18066619 - RSINE1 SINE B4 -18 147 5 1 1610 415 314 39 0 chr5 134470648 134470750 -18066509 - ORR1E LTR MaLR -253 106 1 1 1610 420 77 0 0 chr5 134470759 134470824 -18066435 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1 1610 243 0 0 0 chr5 134470827 134470854 -18066405 + (TA)n Simple_repeat Simple_repeat 1 27 0 1 1610 234 0 0 0 chr5 134470854 134470879 -18066380 + (GA)n Simple_repeat Simple_repeat 2 27 0 1 1610 871 222 9 76 chr5 134471108 134471318 -18065941 + B3A SINE B2 2 197 -1 1 1610 32 0 0 0 chr5 134471403 134471435 -18065824 + AT_rich Low_complexity Low_complexity 1 32 0 1 1610 914 275 26 69 chr5 134471450 134471755 -18065504 + B4A SINE B4 1 292 0 1 1610 848 206 210 89 chr5 134471785 134472146 -18065113 - MTD LTR MaLR 0 419 21 1 1610 198 0 0 0 chr5 134472146 134472168 -18065091 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 1 1610 400 86 14 14 chr5 134472203 134472274 -18064985 + (CA)n Simple_repeat Simple_repeat 1 71 0 1 1610 453 276 68 100 chr5 134472847 134473097 -18064162 - B4 SINE B4 -48 244 3 1 1610 247 351 45 8 chr5 134473143 134473275 -18063984 - RMER15 LTR ERVL -5 570 434 1 1610 715 79 20 0 chr5 134473569 134473670 -18063589 - URR1B DNA MER1_type -6 219 117 1 1610 492 245 11 0 chr5 134473657 134473751 -18063508 + B3 SINE B2 100 194 -22 1 1610 617 174 33 50 chr5 134473823 134473944 -18063315 - URR1B DNA MER1_type -106 119 1 1 1610 649 325 110 96 chr5 134474225 134474508 -18062751 + ORR1E LTR MaLR 1 307 -52 1 1610 1047 236 5 5 chr5 134474508 134474721 -18062538 - B3 SINE B2 -3 213 1 1 1610 649 325 110 96 chr5 134474721 134474791 -18062468 + ORR1E LTR MaLR 308 359 0 1 1610 1065 93 0 0 chr5 134474829 134475144 -18062115 + (TCTCTG)n Simple_repeat Simple_repeat 1 315 0 1 1610 615 309 61 47 chr5 134475221 134475521 -18061738 - B4 SINE B4 -19 273 2 1 1610 336 24 0 0 chr5 134475648 134475689 -18061570 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1610 884 281 24 28 chr5 134476459 134476712 -18060547 - B4A SINE B4 -6 286 35 1 1610 203 216 0 0 chr5 134476758 134476795 -18060464 + MIRm SINE MIR 39 75 -201 1 1610 573 240 13 133 chr5 134476911 134477137 -18060122 - RMER30 DNA MER1_type -2 200 2 1 1610 1566 40 0 0 chr5 134477327 134477572 -18059687 - ZP3AR Satellite Satellite 0 245 1 1 1610 2897 190 26 17 chr5 134477619 134478155 -18059104 - RLTR20A LTR ERVK 0 541 1 1 1610 481 244 8 70 chr5 134478378 134478506 -18058753 + B3A SINE B2 10 129 -69 1 1610 1800 192 82 40 chr5 134478626 134479028 -18058231 - MTD LTR MaLR 0 419 1 1 1610 692 286 113 5 chr5 134479092 134479313 -18057946 + B4A SINE B4 44 288 -4 1 1610 967 228 20 0 chr5 134479370 134479567 -18057692 + B3 SINE B2 1 201 -15 1 1610 443 18 18 0 chr5 134479570 134479626 -18057633 + (TG)n Simple_repeat Simple_repeat 2 58 0 1 201 860 257 103 61 chr5 134479626 134479887 -18057372 - B4A SINE B4 -20 272 1 1 1611 315 243 0 28 chr5 134479942 134480014 -18057245 - ORR1E LTR MaLR -287 72 3 1 1611 247 356 19 29 chr5 134480231 134480335 -18056924 + MIR3 SINE MIR 81 183 -25 1 1611 233 358 112 9 chr5 134480584 134480691 -18056568 + ORR1D2 LTR MaLR 122 239 -131 1 1611 406 313 0 10 chr5 134480771 134480871 -18056388 + ZP3AR Satellite Satellite 50 148 -64 1 1611 401 253 0 35 chr5 134480871 134480957 -18056302 + ID4 SINE ID 1 83 0 1 1611 371 210 48 29 chr5 134481377 134481480 -18055779 - PB1D9 SINE Alu -7 113 9 1 1611 706 297 19 71 chr5 134481547 134481573 -18055686 - B4A SINE B4 0 292 268 1 1611 342 0 0 0 chr5 134481573 134481611 -18055648 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1611 706 297 19 71 chr5 134481611 134481892 -18055367 - B4A SINE B4 -25 267 1 1 1611 680 239 157 5 chr5 134481939 134482124 -18055135 - ID_B1 SINE B4 -11 213 1 1 1611 311 259 0 0 chr5 134482180 134482238 -18055021 + ID2 SINE ID 15 72 -11 1 1611 199 343 9 105 chr5 134482311 134482425 -18054834 - L2c LINE L2 -3 3384 3282 1 1611 1259 65 6 0 chr5 134483634 134483804 -18053455 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 1 1611 261 83 0 0 chr5 134483804 134483840 -18053419 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 1 1611 302 254 146 2 chr5 134483840 134484011 -18053248 + L1M5 LINE L1 3073 3263 -2883 1 1611 237 371 68 19 chr5 134484063 134484269 -18052990 - L2c LINE L2 -807 2612 2397 1 1611 708 219 90 0 chr5 134484320 134484475 -18052784 + B4 SINE B4 121 289 -3 1 1611 241 250 55 14 chr5 134484445 134484518 -18052741 + B3 SINE B2 130 205 -11 1 1611 678 256 14 6 chr5 134484967 134485139 -18052120 + ID_B1 SINE B4 44 208 -16 1 1611 377 182 60 12 chr5 134485230 134485323 -18051936 + PB1D7 SINE Alu 34 142 -8 1 1611 781 307 66 26 chr5 134485328 134485599 -18051660 + B4A SINE B4 1 282 -10 1 1611 246 62 0 0 chr5 134485603 134485635 -18051624 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1611 1229 222 0 7 chr5 134486082 134486393 -18050866 + ZP3AR Satellite Satellite 1 308 0 1 1611 279 335 76 9 chr5 134486406 134486537 -18050722 - MLT1A0 LTR MaLR -239 169 21 1 1611 248 327 68 60 chr5 134486593 134486710 -18050549 + ID_B1 SINE B4 77 194 -30 1 1611 631 263 126 25 chr5 134486804 134487003 -18050256 - ID_B1 SINE B4 -3 221 3 1 1611 535 263 91 91 chr5 134487559 134487835 -18049424 + B4A SINE B4 2 277 -15 1 1611 638 257 7 27 chr5 134488016 134488164 -18049095 + RSINE1 SINE B4 2 146 -19 1 1611 198 71 0 0 chr5 134488171 134488199 -18049060 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1611 203 312 0 0 chr5 134488236 134488284 -18048975 + polypurine Low_complexity Low_complexity 4 51 0 1 1611 226 289 12 35 chr5 134488391 134488477 -18048782 + GA-rich Low_complexity Low_complexity 3 86 0 1 1611 817 238 232 24 chr5 134488539 134488836 -18048423 + MLT1A0 LTR MaLR 4 362 -3 1 1611 516 307 105 87 chr5 134489031 134489363 -18047896 - ORR1E LTR MaLR -15 344 7 1 1611 356 234 58 48 chr5 134489521 134489677 -18047582 + B4 SINE B4 2 157 -8 1 1611 180 200 0 0 chr5 134489697 134489757 -18047502 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1611 468 218 0 0 chr5 134489795 134489969 -18047290 + (CA)n Simple_repeat Simple_repeat 1 174 0 1 1611 324 0 0 0 chr5 134489972 134490008 -18047251 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1611 465 19 0 0 chr5 134490008 134490061 -18047198 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1611 210 271 42 14 chr5 134490091 134490162 -18047097 + B1F2 SINE Alu 1 73 -76 1 1611 1013 231 14 0 chr5 134491120 134491332 -18045927 - B3 SINE B2 -1 215 1 1 1611 800 179 6 0 chr5 134491603 134491941 -18045318 + (TGGA)n Simple_repeat Simple_repeat 1 339 0 1 1611 371 281 8 42 chr5 134492305 134492424 -18044835 + ID_B1 SINE B4 109 223 -1 1 1611 1640 49 11 0 chr5 134492429 134493422 -18043837 + ZP3AR Satellite Satellite 1 1003 0 1 1611 686 315 42 51 chr5 134493492 134493803 -18043456 - ORR1E LTR MaLR -46 313 6 1 1611 1351 241 133 27 chr5 134493945 134494312 -18042947 - MTD LTR MaLR -13 406 1 1 1611 820 201 117 36 chr5 134494396 134494465 -18042794 + B4A SINE B4 2 72 -220 1 1611 192 77 0 0 chr5 134494465 134494491 -18042768 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1611 820 201 117 36 chr5 134494491 134494632 -18042627 + B4A SINE B4 73 229 -63 1 1611 678 253 33 13 chr5 134494632 134494784 -18042475 + RSINE1 SINE B4 3 157 -8 1 1611 610 267 63 51 chr5 134494836 134494994 -18042265 + B3A SINE B2 1 160 -38 1 1611 439 31 31 0 chr5 134494994 134495059 -18042200 + (TC)n Simple_repeat Simple_repeat 2 68 0 1 1611 411 21 0 0 chr5 134495067 134495115 -18042144 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1611 23 0 0 0 chr5 134495192 134495215 -18042044 + AT_rich Low_complexity Low_complexity 1 23 0 1 1611 909 140 0 7 chr5 134495234 134495371 -18041888 + B1_Mus2 SINE Alu 9 144 -3 1 1611 570 183 0 0 chr5 134495431 134495551 -18041708 + (CA)n Simple_repeat Simple_repeat 2 121 0 1 1611 499 238 0 9 chr5 134496301 134496407 -18040852 + PB1D10 SINE Alu 5 109 -8 1 1611 1256 41 0 7 chr5 134496487 134496635 -18040624 + B1_Mm SINE Alu 1 147 0 1 1611 324 0 0 0 chr5 134496635 134496671 -18040588 + (CAAAAA)n Simple_repeat Simple_repeat 6 41 0 1 1611 243 0 0 0 chr5 134496680 134496707 -18040552 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 1 1611 575 27 0 14 chr5 134496714 134496788 -18040471 + (TA)n Simple_repeat Simple_repeat 2 74 0 1 1611 1310 180 164 141 chr5 134496791 134497218 -18040041 - MT2A LTR ERVL -96 437 1 1 1611 906 32 0 61 chr5 134497284 134497448 -18039811 + (GGGGA)n Simple_repeat Simple_repeat 2 155 0 1 1611 321 296 145 22 chr5 134497463 134497601 -18039658 + HAL1-3A_ME LINE L1 2284 2438 -420 1 1611 1775 184 30 14 chr5 134497614 134497977 -18039282 + ORR1D2 LTR MaLR 2 370 0 1 1611 457 248 16 57 chr5 134498032 134498156 -18039103 + ID_B1 SINE B4 106 224 0 1 1611 243 114 0 0 chr5 134498162 134498197 -18039062 + B3A SINE B2 2 36 -162 1 1611 476 312 112 78 chr5 134498440 134498788 -18038471 - MTEa LTR MaLR -14 365 6 1 1611 578 279 24 36 chr5 134498874 134499026 -18038233 + B4A SINE B4 8 157 -135 1 1611 586 229 275 17 chr5 134499026 134499266 -18037993 - MTD LTR MaLR 0 419 118 1 1611 386 269 0 11 chr5 134499341 134499435 -18037824 + B4A SINE B4 186 278 -14 1 1611 232 211 17 17 chr5 134499449 134499507 -18037752 + (CATA)n Simple_repeat Simple_repeat 1 58 0 1 1611 460 97 254 34 chr5 134499598 134499716 -18037543 - B2_Mm2 SINE B2 -5 190 47 1 1611 1311 81 12 0 chr5 134499769 134499941 -18037318 - B2_Mm1t SINE B2 -19 174 1 1 1611 314 190 52 0 chr5 134499941 134499999 -18037260 + B4A SINE B4 104 164 -128 1 1611 354 333 0 64 chr5 134500052 134500225 -18037034 + RSINE1 SINE B4 4 165 0 1 1611 35 24 0 0 chr5 134500225 134500267 -18036992 + AT_rich Low_complexity Low_complexity 1 42 0 2 1611 259 312 39 13 chr5 134500267 134500345 -18036914 + B4 SINE B4 211 290 -2 3 1611 324 381 25 37 chr5 134500474 134500635 -18036624 + B4A SINE B4 3 161 -131 4 1611 892 235 5 58 chr5 134500746 134500954 -18036305 + B3A SINE B2 2 198 0 5 1611 3011 36 0 0 chr5 134500957 134501321 -18035938 - L1_Mm LINE L1 -189 5694 5331 6 1611 1858 27 0 14 chr5 134501321 134501544 -18035715 + L1Md_F3 LINE L1 6348 6567 -17 7 1611 243 0 0 0 chr5 134501550 134501577 -18035682 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 8 1611 345 301 68 0 chr5 134501705 134501808 -18035451 + B1F2 SINE Alu 1 110 -39 9 1611 235 275 86 14 chr5 134501988 134502058 -18035201 - B4 SINE B4 -2 290 216 1 1611 27 0 0 0 chr5 134502058 134502085 -18035174 + AT_rich Low_complexity Low_complexity 1 27 0 1 1611 1499 92 8 2 chr5 134502107 134502340 -18034919 + ZP3AR Satellite Satellite 1 234 -1 1 1611 459 281 0 10 chr5 134502474 134502578 -18034681 + PB1D10 SINE Alu 8 110 -7 1 1611 270 228 70 0 chr5 134502565 134502622 -18034637 + B4 SINE B4 61 121 -171 1 1611 379 255 118 0 chr5 134502622 134502724 -18034535 + ID_B1 SINE B4 82 195 -29 1 1611 243 0 0 0 chr5 134502724 134502751 -18034508 + (CA)n Simple_repeat Simple_repeat 2 28 0 1 1611 732 248 34 103 chr5 134502753 134502987 -18034272 + B4 SINE B4 4 221 -71 1 1611 32 26 0 0 chr5 134502988 134503027 -18034232 + AT_rich Low_complexity Low_complexity 1 39 0 1 1611 480 77 0 0 chr5 134503106 134503171 -18034088 + (CA)n Simple_repeat Simple_repeat 1 65 0 1 1611 203 179 0 0 chr5 134503262 134503301 -18033958 + A-rich Low_complexity Low_complexity 1 39 0 2 1611 570 282 0 53 chr5 134503948 134504098 -18033161 + ID_B1 SINE B4 81 222 -2 2 1611 37219 12 6 7 chr5 134504105 134510111 -18027148 + L1Md_A LINE L1 1 5586 -297 2 1611 9108 8 0 0 chr5 134510111 134511107 -18026152 + L1Md_A LINE L1 5587 6582 0 2 1611 183 42 0 0 chr5 134511111 134511135 -18026124 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1611 575 264 37 25 chr5 134511151 134511314 -18025945 + RSINE1 SINE B4 1 165 0 2 1611 279 216 25 13 chr5 134511323 134511482 -18025777 + (CA)n Simple_repeat Simple_repeat 1 161 0 2 1611 567 170 26 26 chr5 134511495 134511777 -18025482 + (CA)n Simple_repeat Simple_repeat 1 281 0 2 1611 377 180 23 8 chr5 134511799 134511928 -18025331 + (CA)n Simple_repeat Simple_repeat 2 132 0 2 1611 2772 31 28 0 chr5 134512015 134512333 -18024926 - IAPLTR2b LTR ERVK 0 327 1 2 1611 261 218 18 0 chr5 134512350 134512405 -18024854 - MLT1A0 LTR MaLR -54 311 256 2 1611 340 252 47 137 chr5 134512463 134512633 -18024626 - MTEb LTR MaLR -2 377 201 2 1611 461 240 48 40 chr5 134512720 134512846 -18024413 - MTEb LTR MaLR 0 379 253 2 1611 435 275 63 24 chr5 134512967 134513157 -18024102 - MTEb LTR MaLR -184 194 1 2 1611 1959 193 78 13 chr5 134513361 134513744 -18023515 + MTC LTR MaLR 1 408 -13 3 1611 456 301 41 27 chr5 134513723 134513870 -18023389 - MTEa LTR MaLR -15 364 216 3 1611 256 154 0 0 chr5 134513868 134513907 -18023352 - MTEa LTR MaLR -340 39 1 3 1611 21 0 0 0 chr5 134514480 134514501 -18022758 + AT_rich Low_complexity Low_complexity 1 21 0 3 1611 351 314 46 146 chr5 134514543 134514823 -18022436 - ORR1E LTR MaLR -5 354 103 3 1611 263 250 100 40 chr5 134514865 134514965 -18022294 - MLT1A1 LTR MaLR -279 129 24 3 1611 330 230 15 60 chr5 134515208 134515342 -18021917 + (TA)n Simple_repeat Simple_repeat 2 129 0 3 1611 349 203 43 0 chr5 134515369 134515438 -18021821 - ID4_ SINE ID -10 73 2 3 1611 566 183 19 0 chr5 134515438 134515542 -18021717 - PB1D10 SINE Alu -9 108 3 3 1611 180 245 0 0 chr5 134515560 134515613 -18021646 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1611 1053 246 9 113 chr5 134515620 134515946 -18021313 - B4A SINE B4 0 292 1 3 1611 360 145 0 28 chr5 134516038 134516109 -18021150 - HAL1-3A_ME LINE L1 -814 2044 1976 4 1611 308 240 0 10 chr5 134516116 134516217 -18021042 + (TG)n Simple_repeat Simple_repeat 1 100 0 4 1611 639 192 36 90 chr5 134516217 134516383 -18020876 - B4A SINE B4 0 292 136 4 1611 272 335 102 87 chr5 134516331 134516527 -18020732 + MER21B LTR ERV1 101 299 -564 4 1611 1681 41 0 10 chr5 134516711 134517141 -18020118 + ZP3AR Satellite Satellite 1 425 0 4 1611 322 268 12 12 chr5 134517141 134517224 -18020035 + ID4_ SINE ID 1 83 0 4 1611 494 289 161 76 chr5 134517233 134517469 -18019790 + ORR1E LTR MaLR 44 299 -60 4 1611 186 43 0 0 chr5 134517469 134517492 -18019767 + (CCCCCT)n Simple_repeat Simple_repeat 4 26 0 4 1611 735 42 0 0 chr5 134517493 134517588 -18019671 + (TTC)n Simple_repeat Simple_repeat 3 97 0 4 1611 251 277 111 134 chr5 134517588 134517625 -18019634 + ORR1E LTR MaLR 318 371 -8 4 1611 889 283 52 77 chr5 134517719 134518044 -18019215 + MTE2a LTR MaLR 40 356 -23 4 1611 689 302 56 35 chr5 134518585 134518870 -18018389 + B4 SINE B4 2 292 0 5 1611 1668 138 8 5 chr5 134519036 134519826 -18017433 - ZP3AR Satellite Satellite -1 792 1 5 1611 256 268 68 23 chr5 134519792 134519880 -18017379 + MLT1A1 LTR MaLR 259 350 -58 5 1611 354 330 64 46 chr5 134520230 134520510 -18016749 + B4A SINE B4 7 291 -1 5 1611 241 257 13 13 chr5 134520514 134520589 -18016670 + (CA)n Simple_repeat Simple_repeat 2 76 0 5 1611 652 222 22 29 chr5 134521387 134521526 -18015733 + RSINE1 SINE B4 3 140 -25 5 1611 459 0 0 0 chr5 134521529 134521580 -18015679 + (CA)n Simple_repeat Simple_repeat 2 52 0 5 1611 279 173 0 0 chr5 134521588 134521640 -18015619 + GA-rich Low_complexity Low_complexity 2 53 0 5 1611 471 364 12 6 chr5 134521903 134522066 -18015193 + MER91A DNA Tip100 5 168 -28 5 1611 1537 208 76 22 chr5 134522889 134523244 -18014015 + ORR1D1 LTR MaLR 1 374 0 5 1611 463 246 18 15 chr5 134523439 134523555 -18013704 + B3A SINE B2 7 124 -69 6 1611 650 80 43 7 chr5 134523556 134523694 -18013565 + (TC)n Simple_repeat Simple_repeat 1 143 0 6 1611 930 191 50 34 chr5 134524376 134524555 -18012704 + B3A SINE B2 3 184 -14 6 1611 589 315 42 53 chr5 134524934 134525223 -18012036 - B4 SINE B4 -11 281 28 6 1611 327 328 90 52 chr5 134525172 134525461 -18011798 - ORR1D2 LTR MaLR -70 300 1 6 1611 275 281 71 0 chr5 134525570 134525671 -18011588 + MTD LTR MaLR 4 107 -312 6 1611 1255 259 63 24 chr5 134525675 134526008 -18011251 - ORR1E LTR MaLR -5 354 9 6 1611 731 219 135 31 chr5 134526041 134526234 -18011025 + B3 SINE B2 4 216 0 6 1611 404 214 6 17 chr5 134526250 134526426 -18010833 + (TA)n Simple_repeat Simple_repeat 1 174 0 6 1611 464 279 6 55 chr5 134527174 134527337 -18009922 + RSINE1 SINE B4 3 157 -8 6 1611 1084 97 14 0 chr5 134527387 134527531 -18009728 - B1_Mus2 SINE Alu 0 147 2 7 1611 757 241 36 39 chr5 134527531 134527826 -18009433 - ORR1D1 LTR MaLR -3 371 37 7 1611 240 111 0 0 chr5 134527867 134527903 -18009356 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 7 1611 302 311 0 38 chr5 134527919 134528021 -18009238 + B1F SINE Alu 5 99 -21 7 1611 505 195 16 74 chr5 134528309 134528395 -18008864 + MTE2b LTR MaLR 2 87 -292 7 1611 393 22 0 0 chr5 134528395 134528441 -18008818 + (CTTG)n Simple_repeat Simple_repeat 3 48 0 7 1611 830 185 0 0 chr5 134528441 134528571 -18008688 - B1_Mus2 SINE Alu -17 130 1 7 1611 505 195 16 74 chr5 134528571 134528605 -18008654 + MTE2b LTR MaLR 88 115 -264 7 1611 849 203 20 33 chr5 134528605 134528802 -18008457 - B3A SINE B2 -10 185 10 7 1611 268 336 98 8 chr5 134528882 134529014 -18008245 + MTE2b LTR MaLR 197 340 -39 7 1611 775 185 7 22 chr5 134528990 134529128 -18008131 - B1_Mur1 SINE Alu -5 144 9 7 1611 718 169 34 81 chr5 134529168 134529316 -18007943 + B1_Mus1 SINE Alu 1 141 -7 7 1611 857 264 32 46 chr5 134529340 134529558 -18007701 + ID_B1 SINE B4 3 217 -7 8 1611 452 123 111 0 chr5 134529558 134529639 -18007620 + Lx4B LINE L1 6585 6674 -384 8 1611 238 169 47 24 chr5 134529654 134529739 -18007520 + GA-rich Low_complexity Low_complexity 5 91 0 8 1611 2642 153 58 6 chr5 134529800 134530279 -18006980 + Lx4B LINE L1 6549 7052 -6 8 1611 307 257 9 106 chr5 134530704 134530817 -18006442 - B4 SINE B4 -157 135 34 8 1611 554 179 109 132 chr5 134530812 134530986 -18006273 + MTE2a LTR MaLR 21 190 -189 8 1611 1170 237 46 7 chr5 134531078 134531359 -18005900 + Lx8 LINE L1 6475 6766 -707 8 1611 490 262 176 0 chr5 134531360 134531547 -18005712 + Lx8 LINE L1 7007 7226 -247 8 1611 610 199 163 13 chr5 134531590 134531743 -18005516 - ORR1E LTR MaLR 0 359 184 8 1611 222 116 0 0 chr5 134531777 134531820 -18005439 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 8 1611 1119 132 31 21 chr5 134531899 134532092 -18005167 - B2_Mm2 SINE B2 0 195 1 8 1611 618 183 87 0 chr5 134532142 134532257 -18005002 - RSINE1 SINE B4 -33 132 8 9 1611 425 217 269 21 chr5 134532260 134532401 -18004858 + MTE2a LTR MaLR 202 377 -2 8 1611 601 279 19 19 chr5 134532406 134532666 -18004593 + L1MB7 LINE L1 5747 6005 -1990 9 1611 630 75 37 9 chr5 134532687 134532794 -18004465 + ZP3AR Satellite Satellite 49 158 -54 9 1611 243 254 31 16 chr5 134532797 134532861 -18004398 + ID4_ SINE ID 3 67 -16 9 1611 264 294 0 0 chr5 134532903 134532971 -18004288 - Tigger5 DNA MER2_type -2304 102 35 9 1611 194 324 29 0 chr5 134533089 134533157 -18004102 + L4 LINE RTE 1958 2027 -2 9 1611 979 195 0 0 chr5 134533326 134533480 -18003779 + B3A SINE B2 1 154 -44 9 1611 393 58 0 0 chr5 134533480 134533532 -18003727 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1611 770 110 14 20 chr5 134533670 134533818 -18003441 + (CCCCCT)n Simple_repeat Simple_repeat 2 148 0 9 1611 828 273 16 21 chr5 134533851 134534038 -18003221 - ID_B1 SINE B4 -15 209 24 9 1611 532 241 9 0 chr5 134534092 134534204 -18003055 + PB1D10 SINE Alu 5 117 0 1 1611 418 269 38 9 chr5 134534261 134534366 -18002893 + B1F1 SINE Alu 21 128 -21 1 1611 310 147 0 29 chr5 134534367 134534437 -18002822 + GA-rich Low_complexity Low_complexity 2 69 0 1 1611 201 284 19 47 chr5 134535196 134535303 -18001956 + (CATA)n Simple_repeat Simple_repeat 1 104 0 1 1611 223 324 20 27 chr5 134535806 134535955 -18001304 + (CATA)n Simple_repeat Simple_repeat 3 150 0 1 1611 235 327 77 43 chr5 134535967 134536175 -18001084 - RLTR21 LTR ERVK -271 1301 1087 1 1611 504 156 0 0 chr5 134536264 134536354 -18000905 + (TA)n Simple_repeat Simple_repeat 1 90 0 1 1611 371 259 0 0 chr5 134537284 134537365 -17999894 - ID4 SINE ID -1 82 2 1 1611 1175 34 0 0 chr5 134537365 134537514 -17999745 - ZP3AR Satellite Satellite -11 201 53 1 1611 210 331 25 99 chr5 134537869 134538030 -17999229 - L2c LINE L2 -7 3380 3232 1 1611 1007 161 194 0 chr5 134538407 134538587 -17998672 - B3 SINE B2 -1 215 1 1 1611 377 85 0 0 chr5 134538600 134538659 -17998600 - B3 SINE B2 0 216 158 1 1611 288 77 0 0 chr5 134538678 134538717 -17998542 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1611 536 299 59 77 chr5 134538717 134538938 -17998321 + B4A SINE B4 2 218 -74 1 1611 338 191 0 0 chr5 134538980 134539043 -17998216 + ID_B1 SINE B4 162 224 0 1 1611 30 0 0 0 chr5 134539043 134539073 -17998186 + AT_rich Low_complexity Low_complexity 1 30 0 1 1611 640 130 9 9 chr5 134539074 134539190 -17998069 + (GAAA)n Simple_repeat Simple_repeat 1 116 0 1 1611 513 0 0 0 chr5 134539532 134539589 -17997670 + (CACCT)n Simple_repeat Simple_repeat 5 61 0 1 1611 197 132 0 26 chr5 134539615 134539654 -17997605 + CT-rich Low_complexity Low_complexity 1 38 0 1 1611 506 258 48 0 chr5 134540023 134540147 -17997112 + RSINE1 SINE B4 26 155 -10 1 1611 688 244 11 58 chr5 134540284 134540459 -17996800 + B3A SINE B2 1 167 -31 1 1611 459 0 0 0 chr5 134540459 134540510 -17996749 + (TC)n Simple_repeat Simple_repeat 1 51 0 1 1611 688 244 11 58 chr5 134540510 134540525 -17996734 + B3A SINE B2 168 182 -16 1 1611 405 0 0 0 chr5 134540526 134540571 -17996688 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1611 402 100 0 0 chr5 134540581 134540641 -17996618 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1611 1594 37 16 0 chr5 134541142 134541330 -17995929 + B2_Mm1t SINE B2 1 191 -2 1 1611 232 265 0 7 chr5 134541453 134541599 -17995660 + (CA)n Simple_repeat Simple_repeat 1 144 0 1 1611 302 170 0 0 chr5 134541600 134541647 -17995612 + HAL1-3A_ME LINE L1 1976 2022 -836 1 1611 843 103 0 0 chr5 134541803 134541949 -17995310 + (TG)n Simple_repeat Simple_repeat 2 147 0 1 1611 281 281 16 0 chr5 134541973 134542037 -17995222 - ID4_ SINE ID -10 73 9 1 1611 482 237 93 7 chr5 134541990 134542130 -17995129 - ZP3AR Satellite Satellite -57 155 4 1 1611 299 319 73 46 chr5 134542172 134542323 -17994936 + ID_B1 SINE B4 70 224 0 1 1611 1122 103 210 5 chr5 134542460 134542646 -17994613 + URR1A DNA MER1_type 1 224 -2 1 1611 818 306 81 19 chr5 134542817 134543124 -17994135 - MLT1D LTR MaLR -2 503 178 1 1611 571 194 12 36 chr5 134543124 134543381 -17993878 + CT-rich Low_complexity Low_complexity 1 250 0 1 1611 247 230 13 26 chr5 134543437 134543513 -17993746 + CT-rich Low_complexity Low_complexity 3 77 0 1 1611 426 311 30 0 chr5 134543608 134543743 -17993516 - MLT1D LTR MaLR -342 163 25 1 1611 1935 156 25 0 chr5 134544334 134544649 -17992610 - ORR1A4 LTR MaLR 0 329 7 1 1611 273 310 2 31 chr5 134544731 134544827 -17992432 + MTEb LTR MaLR 289 379 0 1 1611 1372 214 54 0 chr5 134545095 134545390 -17991869 + Lx9 LINE L1 7194 7504 -140 1 1611 27 62 0 0 chr5 134545451 134545499 -17991760 + AT_rich Low_complexity Low_complexity 1 48 0 1 1611 930 280 44 61 chr5 134545837 134546130 -17991129 + RMER15 LTR ERVL 275 562 -13 1 1611 780 276 18 6 chr5 134546366 134546534 -17990725 + ID_B1 SINE B4 2 171 -53 1 1611 2054 148 28 34 chr5 134546543 134546899 -17990360 + ORR1B1 LTR MaLR 41 394 0 1 1611 264 30 0 0 chr5 134546951 134546984 -17990275 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1611 525 53 63 0 chr5 134546985 134547080 -17990179 + (TCTCTG)n Simple_repeat Simple_repeat 2 102 0 1 1611 333 0 0 0 chr5 134547082 134547119 -17990140 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1611 744 230 0 0 chr5 134547542 134547668 -17989591 - RSINE1 SINE B4 -37 128 3 1 1611 226 229 295 0 chr5 134547789 134547850 -17989409 + ORR1E LTR MaLR 281 359 0 1 1611 233 295 64 0 chr5 134547906 134547984 -17989275 - ID2 SINE ID 0 83 1 1 1611 1312 108 8 0 chr5 134547984 134548192 -17989067 - ZP3AR Satellite Satellite -11 209 1 1 1611 479 274 115 0 chr5 134548193 134548306 -17988953 - B3A SINE B2 -69 129 4 1 1611 28 0 0 0 chr5 134548309 134548337 -17988922 + AT_rich Low_complexity Low_complexity 1 28 0 1 1611 342 254 0 0 chr5 134548387 134548529 -17988730 + (CA)n Simple_repeat Simple_repeat 1 142 0 1 1611 574 281 75 68 chr5 134548530 134548887 -17988372 + ORR1E LTR MaLR 12 371 -3 1 1611 290 326 20 20 chr5 134548867 134548967 -17988292 + B4A SINE B4 2 101 -191 1 1611 218 186 0 0 chr5 134549111 134549154 -17988105 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1611 207 220 0 0 chr5 134549213 134549263 -17987996 + GA-rich Low_complexity Low_complexity 1 50 0 1 1611 731 247 87 16 chr5 134550337 134550522 -17986737 + B3A SINE B2 1 198 0 1 1611 849 206 31 26 chr5 134550568 134550595 -17986664 - B2_Mm2 SINE B2 0 195 165 1 1611 252 0 0 0 chr5 134550595 134550623 -17986636 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1 1611 849 206 31 26 chr5 134550623 134550789 -17986470 - B2_Mm2 SINE B2 -31 164 2 1 1611 255 103 0 0 chr5 134550853 134550892 -17986367 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1611 204 149 0 0 chr5 134550896 134550943 -17986316 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1611 326 226 10 31 chr5 134550943 134551039 -17986220 + Lx8 LINE L1 7376 7469 -4 1 1611 643 175 127 0 chr5 134551073 134551199 -17986060 + B1_Mur1 SINE Alu 6 147 -2 1 1611 509 235 182 7 chr5 134551270 134551424 -17985835 + RMER15 LTR ERVL 395 575 0 1 1611 655 248 48 70 chr5 134551674 134551904 -17985355 + Lx6 LINE L1 7213 7437 -23 1 1611 437 264 47 0 chr5 134552016 134552122 -17985137 + MTEa LTR MaLR 137 247 -132 1 1611 463 289 71 55 chr5 134552141 134552299 -17984960 + B3A SINE B2 2 162 -36 1 1611 285 51 0 0 chr5 134552299 134552338 -17984921 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1611 463 289 71 55 chr5 134552338 134552362 -17984897 + B3A SINE B2 163 187 -11 1 1611 699 246 47 26 chr5 134552486 134552720 -17984539 - RLTR15 LTR ERVK -119 240 2 1 1611 1003 287 27 67 chr5 134552947 134553246 -17984013 + B4 SINE B4 2 288 -4 1 1611 237 136 45 0 chr5 134553249 134553315 -17983944 + CT-rich Low_complexity Low_complexity 2 70 0 1 1611 404 240 28 34 chr5 134553334 134553548 -17983711 + CT-rich Low_complexity Low_complexity 1 212 0 1 1611 265 345 93 7 chr5 134553570 134553710 -17983549 + MLT2B2 LTR ERVL 331 482 -80 1 1611 498 315 89 17 chr5 134553745 134553986 -17983273 - MER47B DNA MER2_type -6 412 90 1 1611 1001 140 46 12 chr5 134553986 134554159 -17983100 + B2_Mm2 SINE B2 3 181 -14 1 1611 602 255 94 113 chr5 134554189 134554442 -17982817 + ORR1E LTR MaLR 22 246 -121 1 1611 1074 223 173 36 chr5 134554451 134554758 -17982501 + ORR1E LTR MaLR 7 355 -4 1 1611 261 317 19 19 chr5 134554763 134554869 -17982390 + ORR1E LTR MaLR 269 374 -5 1 1611 210 216 20 0 chr5 134554965 134555016 -17982243 - ID4 SINE ID -27 56 5 1 1611 1598 83 4 8 chr5 134554978 134555386 -17981873 - ZP3AR Satellite Satellite -21 406 1 1 1611 273 230 0 0 chr5 134555448 134555522 -17981737 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1611 282 232 18 0 chr5 134555522 134555578 -17981681 - B4 SINE B4 0 292 236 1 1611 513 263 9 0 chr5 134555757 134555871 -17981388 - ID_B1 SINE B4 -26 198 84 1 1611 1038 113 0 0 chr5 134555892 134556034 -17981225 - B2_Mm2 SINE B2 -39 156 15 1 1611 1804 249 111 16 chr5 134556040 134556553 -17980706 + Lx7 LINE L1 6618 7179 -517 1 1611 256 284 0 0 chr5 134556559 134556626 -17980633 + MLT1D LTR MaLR 439 505 0 1 1611 239 328 0 58 chr5 134556943 134557082 -17980177 + C-rich Low_complexity Low_complexity 3 133 0 1 1611 296 191 77 17 chr5 134557567 134557684 -17979575 + (TCTA)n Simple_repeat Simple_repeat 3 126 0 1 1611 360 194 79 0 chr5 134557709 134557923 -17979336 + (TCTA)n Simple_repeat Simple_repeat 1 230 0 1 1611 524 250 22 14 chr5 134558039 134558177 -17979082 - B1F SINE Alu -1 148 10 1 1611 227 271 61 101 chr5 134558045 134558193 -17979066 - B4A SINE B4 -72 220 79 1 1611 228 254 47 16 chr5 134558476 134558540 -17978719 + RSINE1 SINE B4 72 137 -28 1 1611 513 0 0 0 chr5 134558551 134558608 -17978651 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 1 1611 1614 155 102 9 chr5 134558619 134558952 -17978307 - ORR1B2 LTR MaLR -3 364 1 1 1611 260 363 26 0 chr5 134558971 134559084 -17978175 + MLT1A0 LTR MaLR 197 312 -53 1 1611 362 257 0 0 chr5 134559107 134559181 -17978078 - RSINE1 SINE B4 -64 101 28 1 1611 578 208 95 57 chr5 134559225 134559383 -17977876 - RSINE1 SINE B4 0 165 2 1 1611 21 36 0 0 chr5 134559387 134559415 -17977844 + AT_rich Low_complexity Low_complexity 1 28 0 1 1611 431 276 0 33 chr5 134559415 134559535 -17977724 - PB1D10 SINE Alu 0 117 2 1 1611 21 0 0 0 chr5 134559636 134559657 -17977602 + AT_rich Low_complexity Low_complexity 1 21 0 1 1611 756 233 0 35 chr5 134560098 134560267 -17976992 + RSINE1 SINE B4 3 165 0 1 1611 588 118 57 38 chr5 134560328 134560434 -17976825 - B1_Mus2 SINE Alu 0 147 40 1 1611 257 264 14 27 chr5 134560370 134560444 -17976815 - RLTR25B LTR ERVK -529 499 427 1 1611 319 296 0 0 chr5 134560445 134560543 -17976716 + CT-rich Low_complexity Low_complexity 2 99 0 1 1611 334 140 0 0 chr5 134560553 134560610 -17976649 - B1_Mus1 SINE Alu -89 59 3 1 1611 464 226 17 17 chr5 134560790 134560907 -17976352 + PB1D10 SINE Alu 1 117 0 2 1611 687 188 11 154 chr5 134560923 134561105 -17976154 + RSINE1 SINE B4 10 165 0 2 1611 31 0 0 0 chr5 134561146 134561177 -17976082 + AT_rich Low_complexity Low_complexity 1 31 0 2 1611 1225 241 82 34 chr5 134561217 134561570 -17975689 + ORR1D2 LTR MaLR 1 370 0 2 1611 247 311 77 53 chr5 134561570 134561667 -17975592 - MLT2B1 LTR ERVL -52 515 411 2 1611 369 0 0 0 chr5 134561667 134561708 -17975551 + (TC)n Simple_repeat Simple_repeat 1 41 0 2 1611 484 335 17 94 chr5 134561708 134561942 -17975317 - MT2A LTR ERVL -183 350 135 2 1611 309 343 0 29 chr5 134561940 134562045 -17975214 - MTEa LTR MaLR -265 114 13 2 1611 470 320 15 20 chr5 134562045 134562243 -17975016 + L1MC LINE L1 2414 2610 -3536 2 1611 735 250 5 71 chr5 134562245 134562456 -17974803 - B3A SINE B2 -1 197 1 2 1611 413 221 53 76 chr5 134562482 134562614 -17974645 + B1F SINE Alu 7 135 -14 2 1611 336 319 106 0 chr5 134562622 134562716 -17974543 + ZP3AR Satellite Satellite 42 145 -67 2 1611 261 280 93 0 chr5 134562719 134562794 -17974465 + ID4 SINE ID 1 82 -1 2 1611 1391 223 61 53 chr5 134562852 134563246 -17974013 + L1MC LINE L1 3361 3757 -2389 2 1611 268 273 92 14 chr5 134563248 134563389 -17973870 + RSINE1 SINE B4 2 153 -12 2 1611 189 107 0 0 chr5 134563392 134563420 -17973839 + (TAA)n Simple_repeat Simple_repeat 3 30 0 2 1611 305 282 162 42 chr5 134563457 134563716 -17973543 + B4A SINE B4 1 290 -2 2 1611 289 300 0 29 chr5 134564006 134564109 -17973150 + MLT1A1 LTR MaLR 293 392 -16 2 1611 693 278 17 6 chr5 134564227 134564408 -17972851 - ID_B1 SINE B4 -40 184 2 2 1611 278 225 0 101 chr5 134565133 134565212 -17972047 - ZP3AR Satellite Satellite -117 95 25 2 1611 331 331 28 121 chr5 134565209 134565498 -17971761 + ORR1E LTR MaLR 98 359 0 2 1611 239 286 12 23 chr5 134565615 134565701 -17971558 + ID_B1 SINE B4 91 175 -49 2 1611 217 356 9 19 chr5 134565701 134565721 -17971538 + PB1D10 SINE Alu 10 114 -3 2 1611 1330 97 11 4 chr5 134565736 134565990 -17971269 + ZP3AR Satellite Satellite 1 255 0 2 1611 534 172 0 72 chr5 134566010 134566135 -17971124 + ZP3AR Satellite Satellite 32 147 -65 2 1611 1639 173 134 8 chr5 134566303 134566675 -17970584 - MTD LTR MaLR 0 419 1 2 1611 707 237 58 16 chr5 134567043 134567210 -17970049 + B3A SINE B2 2 177 -21 2 1611 255 31 0 0 chr5 134567210 134567242 -17970017 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 1611 707 237 58 16 chr5 134567242 134567263 -17969996 + B3A SINE B2 178 198 0 2 1611 477 0 0 0 chr5 134567444 134567497 -17969762 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1611 828 163 7 0 chr5 134567498 134567639 -17969620 - ORR1D2 LTR MaLR -228 142 1 2 1611 226 247 23 115 chr5 134567930 134567957 -17969302 - MER5A DNA MER1_type -75 114 88 2 1611 2091 125 6 12 chr5 134567957 134568288 -17968971 - ORR1A4 LTR MaLR 0 329 1 2 1611 226 247 23 115 chr5 134568288 134568347 -17968912 - MER5A DNA MER1_type -102 87 36 2 1611 494 255 43 31 chr5 134568536 134568698 -17968561 + RSINE1 SINE B4 2 165 0 2 1611 264 276 100 20 chr5 134569051 134569151 -17968108 + B1_Mus1 SINE Alu 31 138 -10 2 1611 678 176 0 16 chr5 134569344 134569465 -17967794 + PB1D9 SINE Alu 2 120 0 2 1611 413 342 19 67 chr5 134569488 134569505 -17967754 + B4A SINE B4 93 106 -186 2 1611 2218 137 198 5 chr5 134569505 134569944 -17967315 + RLTR28 LTR ERVL 1 524 0 2 1611 413 342 19 67 chr5 134569944 134570136 -17967123 + B4A SINE B4 107 292 0 2 1611 417 364 0 0 chr5 134570224 134570364 -17966895 + B3A SINE B2 59 198 0 2 1611 630 202 98 27 chr5 134570377 134570643 -17966616 + RMER19C LTR ERVK 153 611 0 2 1611 614 235 20 46 chr5 134570657 134570853 -17966406 - MER33 DNA MER1_type -65 259 69 2 1611 233 328 0 0 chr5 134570952 134571019 -17966240 + MER81 DNA AcHobo 43 109 -5 2 1611 318 219 13 27 chr5 134571043 134571118 -17966141 + ZP3AR Satellite Satellite 18 91 -121 2 1611 1161 217 9 9 chr5 134571221 134571614 -17965645 + ZP3AR Satellite Satellite 1 392 0 2 1611 398 319 70 48 chr5 134571625 134571852 -17965407 - MER112 DNA MER1_type -29 232 1 2 1611 268 202 57 161 chr5 134572120 134572132 -17965127 - PB1D10 SINE Alu 0 117 108 2 1611 823 178 180 48 chr5 134572132 134572321 -17964938 - B3 SINE B2 -1 215 2 2 1611 268 202 57 161 chr5 134572321 134572432 -17964827 - PB1D10 SINE Alu -10 107 7 2 1611 345 24 0 0 chr5 134572622 134572664 -17964595 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1611 2216 107 3 3 chr5 134572676 134573003 -17964256 + ORR1A2 LTR MaLR 1 327 0 2 1611 562 228 0 0 chr5 134573013 134573127 -17964132 - RSINE1 SINE B4 -50 115 2 2 1611 501 261 22 0 chr5 134573222 134573356 -17963903 - B1F SINE Alu -8 141 5 2 1611 228 132 26 0 chr5 134573381 134573419 -17963840 - BC1_Mm scRNA scRNA -110 42 4 2 1611 320 266 25 74 chr5 134573442 134573564 -17963695 + PB1D10 SINE Alu 2 117 0 2 1611 516 257 92 82 chr5 134573569 134573764 -17963495 + B3A SINE B2 2 198 0 2 1611 762 230 87 27 chr5 134573795 134573952 -17963307 + B3 SINE B2 14 181 -35 2 1611 312 70 0 0 chr5 134573952 134573995 -17963264 + (CATA)n Simple_repeat Simple_repeat 4 46 0 2 1611 762 230 87 27 chr5 134573995 134574020 -17963239 + B3 SINE B2 182 206 -10 2 1611 628 265 86 24 chr5 134574069 134574278 -17962981 + ID_B1 SINE B4 3 224 0 2 1611 588 186 80 8 chr5 134574316 134574441 -17962818 - RSINE1 SINE B4 -29 136 3 2 1611 184 229 0 0 chr5 134575006 134575054 -17962205 + L2b LINE L2 3024 3071 -304 2 1611 267 31 0 0 chr5 134576351 134576383 -17960876 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2 1611 213 39 0 0 chr5 134576447 134576473 -17960786 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2 1611 26 50 0 0 chr5 134576817 134576857 -17960402 + AT_rich Low_complexity Low_complexity 1 40 0 2 1611 964 56 0 100 chr5 134578102 134578302 -17958957 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1611 21 0 0 0 chr5 134578582 134578603 -17958656 + GC_rich Low_complexity Low_complexity 1 21 0 2 1611 231 61 0 0 chr5 134578838 134578871 -17958388 + (TC)n Simple_repeat Simple_repeat 1 33 0 2 1611 694 263 5 68 chr5 134579115 134579307 -17957952 + B3A SINE B2 5 184 -14 2 1611 223 298 128 8 chr5 134579484 134579609 -17957650 - MIRb SINE MIR -121 147 8 2 1611 290 205 50 25 chr5 134579728 134579808 -17957451 - ID4_ SINE ID -1 82 1 2 1611 1555 55 0 0 chr5 134579809 134580657 -17956602 - ZP3AR Satellite Satellite -12 848 1 2 1611 438 241 34 8 chr5 134580662 134580779 -17956480 - B1F SINE Alu -2 147 28 2 1611 324 143 0 0 chr5 134580858 134580928 -17956331 + (TC)n Simple_repeat Simple_repeat 1 70 0 2 1611 315 313 93 0 chr5 134580957 134581054 -17956205 - B1_Mus1 SINE Alu -43 105 1 2 1611 279 254 87 35 chr5 134581156 134581270 -17955989 + B4 SINE B4 5 110 -182 2 1611 716 258 42 10 chr5 134581270 134581462 -17955797 + B3A SINE B2 1 198 0 2 1611 269 327 110 66 chr5 134581462 134581619 -17955640 + B4A SINE B4 111 287 -5 2 1611 898 242 60 123 chr5 134581708 134581822 -17955437 - ORR1E LTR MaLR 0 359 243 2 1611 231 36 0 0 chr5 134581822 134581850 -17955409 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1611 898 242 60 123 chr5 134581850 134582116 -17955143 - ORR1E LTR MaLR -117 242 3 2 1611 730 245 71 0 chr5 134582151 134582353 -17954906 + B3A SINE B2 2 215 -1 2 1611 854 145 95 174 chr5 134582387 134582590 -17954669 - URR1A DNA MER1_type -3 223 40 2 1611 180 0 0 0 chr5 134582590 134582610 -17954649 + (CCCA)n Simple_repeat Simple_repeat 3 22 0 2 1611 854 145 95 174 chr5 134582610 134582648 -17954611 - URR1A DNA MER1_type -187 39 2 2 1611 219 69 0 0 chr5 134582734 134582763 -17954496 + (GGA)n Simple_repeat Simple_repeat 2 30 0 2 1611 296 277 76 15 chr5 134582850 134582982 -17954277 + B1F SINE Alu 2 141 -8 2 1611 1388 90 12 8 chr5 134582999 134583438 -17953821 + ZP3AR Satellite Satellite 1 440 0 2 1611 24 0 0 0 chr5 134583474 134583498 -17953761 + AT_rich Low_complexity Low_complexity 1 24 0 2 1611 1498 128 2 2 chr5 134584078 134584630 -17952629 - ZP3AR Satellite Satellite -28 551 1 2 1611 214 250 0 0 chr5 134584619 134584663 -17952596 + B1F2 SINE Alu 8 51 -98 2 1611 964 252 56 0 chr5 134584650 134584884 -17952375 - B4A SINE B4 -20 272 26 2 1611 273 318 11 0 chr5 134584938 134585026 -17952233 + B1F1 SINE Alu 3 91 -58 2 1611 550 167 0 10 chr5 134585219 134585322 -17951937 + PB1D9 SINE Alu 3 104 -16 2 1611 444 232 10 10 chr5 134585456 134585556 -17951703 + B4 SINE B4 66 165 -127 2 1611 241 195 0 0 chr5 134585554 134585595 -17951664 + B4A SINE B4 50 90 -202 2 1611 610 215 89 30 chr5 134585633 134585801 -17951458 + B3A SINE B2 19 196 -2 2 1611 411 21 0 0 chr5 134585871 134585919 -17951340 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1611 746 314 31 42 chr5 134586596 134586882 -17950377 + B4A SINE B4 6 288 -4 2 1611 200 246 54 14 chr5 134586884 134586958 -17950301 + (CATA)n Simple_repeat Simple_repeat 3 79 0 2 1611 1179 65 59 6 chr5 134587106 134587122 -17950137 - B2_Mm2 SINE B2 -16 179 164 2 1611 216 0 0 0 chr5 134587122 134587146 -17950113 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 2 1611 1179 65 59 6 chr5 134587146 134587298 -17949961 - B2_Mm2 SINE B2 -32 163 2 2 1611 246 213 213 0 chr5 134587318 134587379 -17949880 + B4 SINE B4 2 75 -217 2 1611 234 0 0 0 chr5 134587394 134587420 -17949839 + (A)n Simple_repeat Simple_repeat 1 26 0 2 1611 248 302 41 32 chr5 134587433 134587556 -17949703 + B4 SINE B4 169 292 0 2 1611 2157 136 5 62 chr5 134587557 134587958 -17949301 - ORR1C1 LTR MaLR 0 378 1 2 1611 258 305 91 55 chr5 134588062 134588338 -17948921 - ORR1D2 LTR MaLR -9 370 81 2 1611 227 103 26 0 chr5 134588364 134588403 -17948856 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1611 603 316 7 0 chr5 134588408 134588547 -17948712 - RSINE1 SINE B4 -17 148 9 2 1611 643 248 0 14 chr5 134588795 134588938 -17948321 - ID_B1 SINE B4 -3 221 81 2 1611 287 323 6 99 chr5 134588938 134588967 -17948292 + YREP_Mm Unknown Unknown 214 340 -1472 3 1611 351 280 11 0 chr5 134589044 134589137 -17948122 + MLT1F LTR MaLR 143 236 -312 3 1611 432 244 0 0 chr5 134589133 134589215 -17948044 + PB1D10 SINE Alu 30 111 -6 3 1611 484 218 230 87 chr5 134589438 134589634 -17947625 + ID_B1 SINE B4 1 224 0 3 1611 529 220 9 27 chr5 134589721 134589833 -17947426 + B3A SINE B2 2 111 -87 3 1611 289 193 0 37 chr5 134589898 134589975 -17947284 + L1MB2 LINE L1 5480 5552 -616 3 1611 672 292 12 0 chr5 134590011 134590172 -17947087 + RSINE1 SINE B4 3 165 0 3 1611 1118 61 0 7 chr5 134590216 134590364 -17946895 + B1_Mm SINE Alu 1 147 0 3 1611 547 221 90 22 chr5 134590398 134590532 -17946727 + B1F1 SINE Alu 1 143 -6 3 1611 721 208 82 12 chr5 134590545 134590715 -17946544 + B3A SINE B2 1 182 -16 3 1611 525 16 0 0 chr5 134590726 134590788 -17946471 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1611 812 293 37 25 chr5 134590819 134591144 -17946115 + L1MB2 LINE L1 5633 5961 -210 3 1611 486 184 78 9 chr5 134591148 134591263 -17945996 + ID_B1 SINE B4 98 220 -4 3 1611 600 268 10 155 chr5 134591270 134591311 -17945948 + B3A SINE B2 1 40 -158 3 1611 471 206 113 0 chr5 134591311 134591408 -17945851 + PB1D9 SINE Alu 1 108 -12 3 1611 600 280 18 127 chr5 134591408 134591611 -17945648 + B3A SINE B2 36 214 -2 3 1611 455 287 72 0 chr5 134591634 134591829 -17945430 + L1MB2 LINE L1 5973 6181 -2 3 1611 419 198 9 38 chr5 134591842 134591950 -17945309 + PB1D10 SINE Alu 21 117 0 3 1611 614 236 32 6 chr5 134591961 134592119 -17945140 + ZP3AR Satellite Satellite 3 164 -48 3 1611 500 278 79 6 chr5 134592188 134592405 -17944854 + MLT2B3 LTR ERVL 197 428 -87 3 1611 184 250 12 23 chr5 134592536 134592622 -17944637 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 3 1611 757 207 140 0 chr5 134592656 134592849 -17944410 - ID_B1 SINE B4 -2 222 3 3 1611 284 119 17 0 chr5 134592853 134592912 -17944347 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 1611 281 292 78 28 chr5 134593085 134593226 -17944033 - Lx8 LINE L1 -4 7469 7322 3 1611 205 179 0 25 chr5 134593290 134593330 -17943929 + GA-rich Low_complexity Low_complexity 1 39 0 3 1611 859 232 11 0 chr5 134593537 134593718 -17943541 + B3A SINE B2 1 183 -15 3 1611 533 259 93 5 chr5 134594041 134594248 -17943011 - ID_B1 SINE B4 -63 229 1 3 1611 877 239 36 70 chr5 134594254 134594555 -17942704 - B4 SINE B4 0 292 2 3 1611 299 282 0 45 chr5 134594789 134594878 -17942381 - PB1D10 SINE Alu -6 111 27 3 1611 418 267 80 15 chr5 134595018 134595155 -17942104 - B4A SINE B4 -132 160 15 3 1611 250 218 0 0 chr5 134595774 134595829 -17941430 + PB1D10 SINE Alu 42 96 -21 3 1611 213 250 13 53 chr5 134595829 134595905 -17941354 + GA-rich Low_complexity Low_complexity 5 77 0 3 1611 558 231 147 0 chr5 134596334 134596490 -17940769 + B3A SINE B2 5 183 -15 3 1611 597 268 106 0 chr5 134596534 134596713 -17940546 + B3 SINE B2 13 210 -6 3 1611 780 156 7 7 chr5 134596875 134597011 -17940248 + B1_Mur3 SINE Alu 1 136 -13 3 1611 1478 75 10 20 chr5 134597535 134597925 -17939334 + ZP3AR Satellite Satellite 1 386 0 3 1611 538 262 32 39 chr5 134597884 134598039 -17939220 + ID_B1 SINE B4 1 154 -70 3 1611 587 260 87 34 chr5 134598515 134598722 -17938537 + B4 SINE B4 2 219 -73 3 1611 669 169 8 0 chr5 134598740 134598858 -17938401 + B1_Mur4 SINE Alu 6 124 -26 3 1611 422 313 53 33 chr5 134598908 134599060 -17938199 + RSINE1 SINE B4 3 157 -8 3 1611 347 289 0 0 chr5 134599143 134599219 -17938040 + PB1D7 SINE Alu 11 86 -34 3 1611 522 270 123 26 chr5 134599226 134599454 -17937805 + B4A SINE B4 41 290 -2 3 1611 401 255 101 32 chr5 134599517 134599537 -17937722 + CYRA11_Mm Unknown Y-chromosome 152 182 -435 3 1611 988 89 76 6 chr5 134599537 134599695 -17937564 - URR1A DNA MER1_type 0 226 58 3 1611 924 119 15 0 chr5 134600248 134600382 -17936877 + B1_Mus1 SINE Alu 3 138 -10 3 1611 261 0 0 0 chr5 134600382 134600411 -17936848 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3 1611 654 288 0 0 chr5 134600457 134600620 -17936639 + RSINE1 SINE B4 3 165 0 3 1611 558 289 42 16 chr5 134600769 134600962 -17936297 - B3A SINE B2 0 198 1 3 1611 419 294 49 56 chr5 134601015 134601159 -17936100 + ID_B1 SINE B4 82 224 0 3 1611 1537 43 4 5 chr5 134601235 134601686 -17935573 + ZP3AR Satellite Satellite 1 450 0 3 1611 222 37 0 0 chr5 134601923 134601950 -17935309 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 3 1611 707 240 20 0 chr5 134602036 134602186 -17935073 - RSINE1 SINE B4 0 165 13 3 1611 383 255 51 0 chr5 134602217 134602315 -17934944 - PB1D7 SINE Alu -17 103 1 3 1611 304 231 64 32 chr5 134602373 134602414 -17934845 - L1MEg LINE L1 -4163 1921 1878 3 1611 1104 88 0 0 chr5 134602414 134602561 -17934698 - B1_Mus1 SINE Alu 0 148 2 3 1611 304 231 64 32 chr5 134602561 134602575 -17934684 - L1MEg LINE L1 -4207 1877 1863 3 1611 701 263 72 0 chr5 134602575 134602769 -17934490 - B3 SINE B2 -6 210 3 3 1611 304 231 64 32 chr5 134602769 134602806 -17934453 - L1MEg LINE L1 -4222 1862 1826 3 1611 988 195 54 15 chr5 134602826 134603029 -17934230 + B3 SINE B2 2 212 -4 3 1611 897 110 0 0 chr5 134603062 134603189 -17934070 + B1_Mus1 SINE Alu 3 129 -19 3 1611 1233 89 56 0 chr5 134603215 134603394 -17933865 - B2_Mm2 SINE B2 -6 189 1 3 1611 294 300 13 103 chr5 134603403 134603559 -17933700 - B1_Mur2 SINE Alu -7 142 1 3 1611 641 246 93 0 chr5 134603431 134603614 -17933645 - ID_B1 SINE B4 0 224 25 3 1611 340 248 25 107 chr5 134603734 134603856 -17933403 + MT2B LTR ERVL 154 265 -336 3 1611 664 183 61 8 chr5 134603756 134603888 -17933371 + B1_Mur1 SINE Alu 9 147 -2 3 1611 810 81 0 8 chr5 134604288 134604412 -17932847 + ZP3AR Satellite Satellite 42 164 -48 3 1611 2082 273 109 99 chr5 134604432 134605703 -17931556 - RMER12 LTR ERVK -38 1284 1 3 1611 1186 120 0 0 chr5 134605704 134605902 -17931357 + ZP3AR Satellite Satellite 1 198 0 3 1611 225 309 0 0 chr5 134605859 134605914 -17931345 + ID4 SINE ID 1 55 -28 3 1611 250 178 0 22 chr5 134606186 134606232 -17931027 + ID_B1 SINE B4 167 211 -13 3 1611 782 204 130 92 chr5 134606235 134606398 -17930861 + B3A SINE B2 3 172 -23 3 1611 465 50 0 0 chr5 134606398 134606458 -17930801 + (CATA)n Simple_repeat Simple_repeat 1 60 0 3 1611 478 204 130 92 chr5 134606458 134606478 -17930781 + B2_Mm2 SINE B2 173 192 -3 3 1611 281 190 17 0 chr5 134606846 134606904 -17930355 + B4A SINE B4 1 59 -233 3 1611 905 136 0 7 chr5 134606905 134607060 -17930199 + (GGGA)n Simple_repeat Simple_repeat 3 156 0 3 1611 288 243 75 28 chr5 134607068 134607174 -17930085 + PB1D10 SINE Alu 5 115 -2 3 1611 589 269 0 0 chr5 134607174 134607315 -17929944 + RSINE1 SINE B4 3 143 -22 3 1611 186 43 0 0 chr5 134607324 134607347 -17929912 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1611 513 216 187 0 chr5 134607893 134608032 -17929227 - ID_B1 SINE B4 0 224 60 3 1611 551 189 18 9 chr5 134608131 134608243 -17929016 - PB1D10 SINE Alu 0 117 5 3 1611 530 241 229 47 chr5 134608521 134608774 -17928485 - RMER15 LTR ERVL -2 573 275 3 1611 645 203 58 0 chr5 134608864 134609002 -17928257 - B1_Mur1 SINE Alu -1 148 3 3 1611 294 179 18 0 chr5 134609263 134609319 -17927940 + ID SINE ID 15 71 -153 3 1611 474 274 17 8 chr5 134609318 134609374 -17927885 + ID SINE ID 24 80 -144 3 1611 278 299 0 130 chr5 134609374 134609474 -17927785 + PB1D10 SINE Alu 1 87 -30 3 1611 269 304 127 28 chr5 134609508 134609650 -17927609 + RSINE1 SINE B4 2 157 -8 3 1611 687 228 62 28 chr5 134609692 134609868 -17927391 + B3A SINE B2 1 182 -16 3 1611 504 0 0 0 chr5 134609879 134609935 -17927324 + (TAAAA)n Simple_repeat Simple_repeat 4 59 0 3 1611 997 211 14 5 chr5 134609939 134610149 -17927110 + B3 SINE B2 1 212 -4 3 1611 33 66 0 0 chr5 134610169 134610230 -17927029 + AT_rich Low_complexity Low_complexity 1 61 0 3 1611 719 202 142 11 chr5 134610244 134610434 -17926825 + B3 SINE B2 2 216 0 3 1611 580 255 19 68 chr5 134610644 134610850 -17926409 + B3A SINE B2 1 196 -2 3 1612 489 34 0 0 chr5 134611269 134611328 -17925931 + (CA)n Simple_repeat Simple_repeat 2 60 0 3 1612 1789 213 104 30 chr5 134612358 134612798 -17924461 - Lx8 LINE L1 -457 7016 6544 3 1612 1430 88 6 27 chr5 134613629 134613943 -17923316 + ZP3AR Satellite Satellite 1 307 0 3 1612 234 0 0 0 chr5 134615800 134615826 -17921433 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 1612 226 107 0 35 chr5 134616478 134616536 -17920723 + (TTTTTG)n Simple_repeat Simple_repeat 5 60 0 3 1612 876 169 0 0 chr5 134616678 134616820 -17920439 - B1_Mur3 SINE Alu -2 147 6 3 1612 332 286 23 105 chr5 134616711 134616844 -17920415 - MT2B LTR ERVL -337 264 143 3 1612 228 255 68 37 chr5 134616716 134616879 -17920380 - ORR1B1-int LTR MaLR -755 754 587 3 1612 295 230 68 0 chr5 134617291 134617365 -17919894 - ID4_ SINE ID 0 83 5 3 1612 425 193 45 0 chr5 134617550 134617638 -17919621 + PB1D10 SINE Alu 26 117 0 3 1612 327 146 0 0 chr5 134617638 134617693 -17919566 + (A)n Simple_repeat Simple_repeat 1 55 0 3 1612 895 243 116 73 chr5 134618336 134618638 -17918621 - MTEa LTR MaLR -37 342 28 3 1612 249 33 0 0 chr5 134619253 134619283 -17917976 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1612 258 315 43 0 chr5 134620352 134620444 -17916815 - MLT1D LTR MaLR 0 505 410 3 1612 278 233 192 0 chr5 134620404 134620477 -17916782 + PB1D10 SINE Alu 12 98 -19 4 1612 729 236 101 11 chr5 134620478 134620666 -17916593 + B3 SINE B2 7 211 -5 4 1612 629 203 47 34 chr5 134621006 134621154 -17916105 + B3 SINE B2 67 216 0 4 1612 1163 95 0 0 chr5 134621169 134621316 -17915943 + B1_Mus1 SINE Alu 2 148 0 4 1612 671 240 69 54 chr5 134621333 134621536 -17915723 + B3 SINE B2 1 206 -10 4 1612 1432 75 43 0 chr5 134621863 134622049 -17915210 + B2_Mm2 SINE B2 1 194 -1 4 1612 643 239 41 72 chr5 134622123 134622344 -17914915 - ID_B1 SINE B4 -10 214 1 4 1612 624 201 109 29 chr5 134622379 134622553 -17914706 - B3A SINE B2 -10 188 1 4 1612 346 321 28 40 chr5 134622768 134622918 -17914341 + MTE2b LTR MaLR 3 141 -229 4 1612 351 291 44 44 chr5 134622988 134623146 -17914113 + MTE2b LTR MaLR 191 348 -31 4 1612 656 257 94 14 chr5 134623425 134623638 -17913621 + B4 SINE B4 1 230 -62 4 1612 418 247 0 2 chr5 134623638 134623750 -17913509 + B1_Mur4 SINE Alu 3 113 -7 4 1612 267 31 0 0 chr5 134623819 134623851 -17913408 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1612 907 271 10 0 chr5 134624950 134625157 -17912102 - ID_B1 SINE B4 -15 209 1 4 1612 267 31 0 0 chr5 134625544 134625576 -17911683 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1612 748 272 63 68 chr5 134625577 134625821 -17911438 - B4A SINE B4 -14 278 34 4 1612 408 88 0 0 chr5 134625821 134625878 -17911381 + (TG)n Simple_repeat Simple_repeat 1 57 0 4 1612 351 290 27 27 chr5 134625885 134625995 -17911264 - RSINE1 SINE B4 -40 125 16 4 1612 2708 129 24 17 chr5 134626134 134626318 -17910941 + MTC LTR MaLR 1 186 -235 4 1612 408 99 0 0 chr5 134626318 134626389 -17910870 + (CA)n Simple_repeat Simple_repeat 2 72 0 4 1612 2708 129 24 17 chr5 134626389 134626622 -17910637 + MTC LTR MaLR 187 421 0 4 1612 198 0 0 0 chr5 134626736 134626758 -17910501 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1612 785 246 48 131 chr5 134626840 134627154 -17910105 - B4A SINE B4 -2 290 3 4 1612 331 148 266 64 chr5 134627162 134627256 -17910003 - PB1D9 SINE Alu -1 119 7 4 1612 382 260 80 0 chr5 134627271 134627371 -17909888 - PB1D7 SINE Alu -8 112 5 4 1612 697 230 25 94 chr5 134627457 134627692 -17909567 + ID_B1 SINE B4 4 222 -2 4 1612 631 200 0 54 chr5 134628525 134628673 -17908586 - ID_B1 SINE B4 -18 206 67 4 1612 320 180 16 0 chr5 134628786 134628847 -17908412 + PB1D9 SINE Alu 1 62 -58 4 1612 626 68 0 11 chr5 134628853 134628942 -17908317 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 4 1612 528 301 7 20 chr5 134629026 134629175 -17908084 + RSINE1 SINE B4 2 148 -17 4 1612 327 65 0 0 chr5 134629176 134629222 -17908037 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1612 267 31 0 0 chr5 134629224 134629256 -17908003 + (GA)n Simple_repeat Simple_repeat 1 32 0 4 1612 690 113 0 0 chr5 134629252 134629358 -17907901 + (GGA)n Simple_repeat Simple_repeat 2 107 0 4 1612 443 254 18 0 chr5 134629371 134629485 -17907774 - B3A SINE B2 -76 122 7 4 1612 832 216 16 6 chr5 134629578 134629760 -17907499 - ID_B1 SINE B4 -1 223 40 4 1612 286 388 7 29 chr5 134630389 134630527 -17906732 - L2b LINE L2 -23 3352 3218 4 1612 1234 76 119 0 chr5 134630537 134630747 -17906512 - ZP3AR Satellite Satellite -30 235 1 4 1612 23 33 0 0 chr5 134630777 134630807 -17906452 + AT_rich Low_complexity Low_complexity 1 30 0 4 1612 234 0 0 0 chr5 134631489 134631515 -17905744 + (TGGA)n Simple_repeat Simple_repeat 1 26 0 4 1612 459 248 75 0 chr5 134631851 134631984 -17905275 + ID_B1 SINE B4 1 143 -81 4 1612 1118 102 0 0 chr5 134632206 134632353 -17904906 - B1_Mus2 SINE Alu 0 147 1 4 1612 1298 92 43 0 chr5 134632363 134632548 -17904711 - B2_Mm1a SINE B2 0 193 1 4 1612 1068 223 19 19 chr5 134632651 134632857 -17904402 - B3 SINE B2 -6 210 5 4 1612 343 190 25 25 chr5 134632858 134632939 -17904320 - PB1D10 SINE Alu -3 114 34 4 1612 186 133 0 0 chr5 134632948 134632978 -17904281 + (TTTCC)n Simple_repeat Simple_repeat 5 34 0 4 1612 185 35 0 65 chr5 134633012 134633043 -17904216 + (GTTTG)n Simple_repeat Simple_repeat 5 33 0 4 1612 259 214 0 136 chr5 134633199 134633280 -17903979 + ID4 SINE ID 5 74 -9 4 1612 183 302 103 9 chr5 134633788 134633895 -17903364 - L2b LINE L2 -222 3153 3037 4 1612 487 229 66 0 chr5 134633923 134634045 -17903214 + B1_Mur1 SINE Alu 6 135 -14 4 1612 701 191 0 8 chr5 134634104 134634231 -17903028 + B1_Mur1 SINE Alu 24 149 0 4 1612 602 232 66 18 chr5 134634240 134634407 -17902852 + B3A SINE B2 9 183 -15 4 1612 195 346 13 13 chr5 134634423 134634502 -17902757 - L2b LINE L2 -480 2939 2861 4 1612 778 193 0 26 chr5 134634562 134634716 -17902543 - B1_Mur4 SINE Alu 0 150 1 4 1612 353 255 30 10 chr5 134635137 134635236 -17902023 + ORR1E LTR MaLR 66 166 -193 4 1612 459 227 0 0 chr5 134635241 134635338 -17901921 + PB1D7 SINE Alu 9 105 -15 4 1612 365 98 72 12 chr5 134635341 134635424 -17901835 + GA-rich Low_complexity Low_complexity 1 88 0 4 1612 407 264 57 8 chr5 134635431 134635553 -17901706 + RSINE1 SINE B4 3 130 -35 4 1612 653 224 13 45 chr5 134635583 134635667 -17901592 + B1_Mur2 SINE Alu 1 80 -69 4 1612 1279 73 77 22 chr5 134635667 134635830 -17901429 + B2_Mm1a SINE B2 2 160 -33 4 1612 207 0 0 0 chr5 134635830 134635853 -17901406 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1612 1279 73 77 22 chr5 134635853 134635870 -17901389 + B2_Mm1a SINE B2 161 190 -3 4 1612 653 224 13 45 chr5 134635870 134635939 -17901320 + B1_Mur2 SINE Alu 81 149 0 4 1612 1356 86 43 0 chr5 134635957 134636143 -17901116 + B2_Mm2 SINE B2 2 195 0 4 1612 416 339 109 67 chr5 134636160 134636609 -17900650 + MLT1F2 LTR MaLR 8 475 -85 4 1612 1017 128 0 26 chr5 134636848 134637000 -17900259 - B1_Mus1 SINE Alu 0 148 1 4 1612 303 322 11 22 chr5 134637048 134637122 -17900137 - RSINE1 SINE B4 0 165 92 4 1612 1704 31 0 0 chr5 134637122 134637315 -17899944 + B2_Mm1a SINE B2 1 193 0 4 1612 303 322 11 22 chr5 134637315 134637332 -17899927 - RSINE1 SINE B4 -74 91 75 4 1612 361 236 118 43 chr5 134637361 134637454 -17899805 - RSINE1 SINE B4 -62 103 4 4 1612 1084 207 65 35 chr5 134637595 134637855 -17899404 + B4 SINE B4 2 269 -23 4 1612 198 0 0 0 chr5 134637855 134637877 -17899382 + (CA)n Simple_repeat Simple_repeat 2 23 0 4 1612 217 184 0 0 chr5 134637983 134638021 -17899238 + B4 SINE B4 90 127 -165 4 1612 282 304 94 76 chr5 134638051 134638222 -17899037 + YREP_Mm Unknown Unknown 123 296 -1516 4 1612 807 182 7 0 chr5 134638100 134638243 -17899016 - ID_B1 SINE B4 0 224 81 4 1612 241 263 37 75 chr5 134638422 134638529 -17898730 + PB1D10 SINE Alu 1 103 -14 4 1612 1148 55 20 20 chr5 134638532 134638681 -17898578 + B1_Mur4 SINE Alu 2 150 0 4 1612 938 62 141 0 chr5 134638687 134638815 -17898444 + B1_Mm SINE Alu 2 147 0 4 1612 259 253 33 33 chr5 134638875 134638965 -17898294 + B4A SINE B4 3 92 -200 4 1612 1427 95 16 0 chr5 134639030 134639220 -17898039 + B2_Mm2 SINE B2 1 193 -2 4 1612 375 235 35 0 chr5 134639829 134639914 -17897345 + B1F SINE Alu 44 131 -18 4 1612 232 164 143 32 chr5 134639903 134639966 -17897293 + MT2B LTR ERVL 218 287 -314 4 1612 538 173 91 0 chr5 134639944 134640054 -17897205 + B1_Mur2 SINE Alu 9 128 -21 4 1612 1518 59 37 0 chr5 134640077 134640264 -17896995 + B2_Mm2 SINE B2 1 194 -1 4 1612 493 92 0 48 chr5 134640284 134640387 -17896872 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 4 1612 275 308 58 0 chr5 134640615 134640719 -17896540 + PB1 SINE Alu 2 111 -16 4 1612 315 290 9 61 chr5 134641681 134641795 -17895464 - MIRc SINE MIR -154 114 7 4 1612 585 158 0 77 chr5 134641883 134642013 -17895246 + MTC LTR MaLR 1 120 -301 4 1612 252 86 0 0 chr5 134642013 134642048 -17895211 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1612 873 44 0 0 chr5 134642048 134642162 -17895097 - B1_Mus1 SINE Alu 0 148 35 4 1612 1447 155 90 4 chr5 134642163 134642442 -17894817 + MTC LTR MaLR 111 413 -8 4 1612 618 276 35 12 chr5 134642785 134642957 -17894302 - B3A SINE B2 -20 178 3 4 1612 189 0 0 0 chr5 134643137 134643158 -17894101 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4 1612 812 168 0 21 chr5 134643158 134643298 -17893961 - B1_Mus2 SINE Alu -10 137 1 4 1612 230 359 104 0 chr5 134643310 134643416 -17893843 - PB1D10 SINE Alu 0 117 1 4 1612 22 80 0 0 chr5 134643463 134643513 -17893746 + AT_rich Low_complexity Low_complexity 1 50 0 4 1612 559 236 35 7 chr5 134643513 134643654 -17893605 + B1_Mur1 SINE Alu 1 145 -4 4 1612 278 189 14 42 chr5 134643675 134643747 -17893512 + RLTR25B LTR ERVK 438 507 -521 4 1612 544 178 0 19 chr5 134643685 134643788 -17893471 + B1_Mus2 SINE Alu 46 146 -1 4 1612 403 257 163 7 chr5 134643788 134643929 -17893330 + RSINE1 SINE B4 2 164 -1 4 1612 186 71 0 0 chr5 134643930 134643958 -17893301 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1612 588 205 108 93 chr5 134644548 134644742 -17892517 + B3A SINE B2 2 198 0 4 1612 502 152 45 0 chr5 134644954 134645066 -17892193 + C-rich Low_complexity Low_complexity 2 118 0 4 1612 304 267 22 34 chr5 134645445 134645534 -17891725 + ID SINE ID 1 88 -136 4 1612 257 151 74 19 chr5 134645635 134645689 -17891570 + B1F SINE Alu 22 78 -71 4 1612 215 182 23 0 chr5 134645736 134645780 -17891479 + ID2 SINE ID 35 79 -4 4 1612 330 26 0 0 chr5 134645793 134645832 -17891427 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1612 360 0 0 0 chr5 134645891 134645931 -17891328 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 4 1612 1142 65 7 0 chr5 134645932 134646086 -17891173 - B2_Mm1a SINE B2 -38 155 1 4 1612 26 50 0 0 chr5 134646091 134646131 -17891128 + AT_rich Low_complexity Low_complexity 1 40 0 5 1612 321 296 167 0 chr5 134646194 134646326 -17890933 + RSINE1 SINE B4 12 165 0 5 1612 251 282 103 0 chr5 134646377 134646455 -17890804 - ID_B1 SINE B4 -84 140 55 5 1612 696 152 0 26 chr5 134646506 134646621 -17890638 + PB1D9 SINE Alu 3 114 -6 5 1612 686 169 87 14 chr5 134646685 134646823 -17890436 - B1_Mur1 SINE Alu 0 149 2 5 1612 630 246 107 64 chr5 134646844 134647031 -17890228 - B3A SINE B2 0 198 4 5 1612 543 299 20 0 chr5 134647127 134647274 -17889985 - RSINE1 SINE B4 0 165 16 5 1612 782 170 13 66 chr5 134647422 134647573 -17889686 - B1_Mus1 SINE Alu -1 147 5 5 1612 214 293 39 29 chr5 134647585 134647687 -17889572 - B1F SINE Alu -2 147 45 5 1612 253 337 52 10 chr5 134648007 134648103 -17889156 + MIRc SINE MIR 26 125 -143 5 1612 699 248 13 7 chr5 134648133 134648283 -17888976 + RSINE1 SINE B4 12 162 -3 5 1612 392 258 304 32 chr5 134648339 134648559 -17888700 + B4A SINE B4 1 280 -12 5 1612 183 310 0 66 chr5 134648616 134648692 -17888567 + MIR SINE MIR 161 231 -31 5 1612 410 290 6 74 chr5 134649225 134649400 -17887859 - B3A SINE B2 -32 166 4 5 1612 315 71 0 0 chr5 134649559 134649601 -17887658 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 5 1612 770 155 0 114 chr5 134649601 134649768 -17887491 - B1_Mur3 SINE Alu 0 149 2 5 1612 592 230 24 73 chr5 134649884 134650048 -17887211 + B3 SINE B2 50 205 -11 5 1612 517 288 0 40 chr5 134650311 134650463 -17886796 + ID_B1 SINE B4 78 223 -1 5 1612 465 337 63 0 chr5 134650468 134650643 -17886616 + L1M4 LINE L1 4085 4270 -1876 5 1612 709 187 56 21 chr5 134650653 134650795 -17886464 + B1_Mur2 SINE Alu 2 148 -1 5 1612 467 260 24 24 chr5 134650830 134650956 -17886303 + B3 SINE B2 81 206 -10 5 1612 320 231 0 60 chr5 134651048 134651131 -17886128 + ID4 SINE ID 2 79 -4 5 1612 375 296 39 16 chr5 134651283 134651410 -17885849 + ID_B1 SINE B4 7 136 -88 5 1612 494 211 0 46 chr5 134651403 134651512 -17885747 - PB1D7 SINE Alu -13 107 4 5 1612 837 41 65 0 chr5 134651557 134651680 -17885579 - B1_Mus1 SINE Alu -6 142 12 5 1612 220 264 72 49 chr5 134651801 134651930 -17885329 + MIR SINE MIR 40 166 -102 5 1612 369 0 0 0 chr5 134652876 134652917 -17884342 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1612 235 333 13 0 chr5 134652941 134653016 -17884243 - ID4_ SINE ID -7 76 1 5 1612 357 278 82 0 chr5 134653099 134653196 -17884063 + PB1D7 SINE Alu 1 105 -15 5 1612 198 0 0 0 chr5 134653207 134653229 -17884030 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 5 1612 438 168 239 53 chr5 134653229 134653342 -17883917 - B1_Mur1 SINE Alu -14 135 2 5 1612 463 294 20 7 chr5 134653355 134653374 -17883885 - B1F1 SINE Alu 0 149 130 5 1612 823 221 8 178 chr5 134653374 134653627 -17883632 - B3 SINE B2 -5 211 2 5 1612 556 197 0 6 chr5 134653627 134653754 -17883505 - PB1D7 SINE Alu -20 129 1 5 1612 779 230 122 0 chr5 134653982 134654178 -17883081 - ID_B1 SINE B4 -4 220 1 5 1612 387 238 93 93 chr5 134654335 134654497 -17882762 + RSINE1 SINE B4 2 163 -2 5 1612 1019 93 0 48 chr5 134654903 134655049 -17882210 + B1_Mur4 SINE Alu 1 139 -11 5 1612 1239 19 6 0 chr5 134655194 134655350 -17881909 - ORR1A0 LTR MaLR -8 338 182 5 1612 315 289 31 69 chr5 134655328 134655458 -17881801 + MT2B LTR ERVL 139 263 -338 5 1612 623 227 23 0 chr5 134655365 134655497 -17881762 + B1_Mur1 SINE Alu 15 149 0 5 1612 1037 66 73 0 chr5 134655507 134655644 -17881615 + B1_Mm SINE Alu 1 147 0 5 1612 581 266 0 77 chr5 134655651 134655834 -17881425 + B3A SINE B2 27 195 -3 5 1612 560 259 82 0 chr5 134656081 134656216 -17881043 - ID_B1 SINE B4 0 224 79 5 1612 494 317 12 24 chr5 134656246 134656411 -17880848 - RSINE1 SINE B4 0 165 3 5 1612 637 250 22 0 chr5 134656442 134656578 -17880681 - B1_Mur1 SINE Alu 0 149 11 5 1612 286 262 26 104 chr5 134656477 134656592 -17880667 - MT2B LTR ERVL -337 264 159 5 1612 659 184 38 32 chr5 134656662 134656822 -17880437 + ID_B1 SINE B4 70 225 -67 5 1612 276 273 20 65 chr5 134656903 134657056 -17880203 - L1M5 LINE L1 -1439 4707 4562 5 1612 669 156 9 0 chr5 134657277 134657386 -17879873 - B1_Mur1 SINE Alu -8 141 32 5 1612 831 153 20 27 chr5 134657510 134657658 -17879601 - B1_Mus1 SINE Alu -1 147 1 5 1612 253 180 344 0 chr5 134657690 134657751 -17879508 + PB1D9 SINE Alu 4 85 -64 5 1612 788 171 13 0 chr5 134657752 134657910 -17879349 + GA-rich Low_complexity Low_complexity 3 162 0 5 1612 347 286 100 50 chr5 134657955 134658135 -17879124 + ORR1E LTR MaLR 1 189 -170 5 1612 229 284 13 39 chr5 134658321 134658398 -17878861 - L2 LINE L2 -1002 2417 2343 5 1612 757 174 7 0 chr5 134658445 134658583 -17878676 - B1_Mus2 SINE Alu 0 147 9 5 1612 495 224 19 0 chr5 134658961 134659068 -17878191 - PB1D9 SINE Alu -5 115 7 5 1612 29 28 0 0 chr5 134659076 134659112 -17878147 + AT_rich Low_complexity Low_complexity 1 36 0 5 1612 358 268 131 21 chr5 134659112 134659257 -17878002 - B3A SINE B2 -37 161 1 5 1612 281 193 409 14 chr5 134659312 134659454 -17877805 + B3 SINE B2 1 197 -19 5 1612 687 107 83 0 chr5 134659572 134659693 -17877566 + B1_Mus2 SINE Alu 6 136 -11 5 1612 226 246 0 0 chr5 134659949 134660006 -17877253 + A-rich Low_complexity Low_complexity 1 57 0 5 1612 1202 62 0 0 chr5 134660705 134660851 -17876408 - B1_Mus1 SINE Alu -2 146 1 5 1612 32 86 0 0 chr5 134660852 134660933 -17876326 + AT_rich Low_complexity Low_complexity 1 81 0 5 1612 392 216 57 0 chr5 134661032 134661120 -17876139 + B1_Mur1 SINE Alu 52 144 -5 5 1612 322 211 0 50 chr5 134661228 134661308 -17875951 + B1F SINE Alu 1 76 -73 5 1612 664 87 0 0 chr5 134661396 134661488 -17875771 + B1_Mur3 SINE Alu 52 143 -6 5 1612 339 164 0 92 chr5 134661412 134661499 -17875760 + ID_B1 SINE B4 146 224 0 5 1612 593 254 18 35 chr5 134661509 134661680 -17875579 + B3 SINE B2 27 194 -22 5 1612 1408 71 16 21 chr5 134662294 134662482 -17874777 + B2_Mm2 SINE B2 2 188 -7 5 1612 605 317 10 36 chr5 134662686 134662882 -17874377 + B3A SINE B2 1 191 -7 5 1612 778 175 0 47 chr5 134663142 134663292 -17873967 - B1_Mur3 SINE Alu -6 143 1 5 1612 1104 189 18 32 chr5 134663300 134663519 -17873740 - B3 SINE B2 0 216 1 5 1612 327 200 196 22 chr5 134663633 134663725 -17873534 - PB1D10 SINE Alu -7 110 3 5 1612 453 120 11 21 chr5 134663965 134664055 -17873204 - B1_Mus2 SINE Alu -2 145 41 5 1612 1166 82 0 0 chr5 134664134 134664281 -17872978 + B1_Mus2 SINE Alu 1 147 0 5 1612 522 114 0 0 chr5 134664282 134664361 -17872898 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 5 1612 852 176 24 6 chr5 134664640 134664806 -17872453 + URR1A DNA MER1_type 58 226 0 5 1612 276 333 85 29 chr5 134664806 134664902 -17872357 - CYRA11_Mm Unknown Y-chromosome -443 174 68 5 1612 699 220 112 29 chr5 134664902 134665031 -17872228 - ID_B1 SINE B4 0 224 92 5 1612 345 75 0 0 chr5 134665031 134665084 -17872175 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 5 1612 699 220 112 29 chr5 134665084 134665160 -17872099 - ID_B1 SINE B4 -133 91 3 5 1612 276 333 85 29 chr5 134665160 134665189 -17872070 - CYRA11_Mm Unknown Y-chromosome -550 67 34 5 1612 347 267 0 53 chr5 134665313 134665408 -17871851 + PB1D10 SINE Alu 25 114 -3 5 1612 753 161 83 6 chr5 134665422 134665578 -17871681 + B3A SINE B2 1 168 -30 5 1612 441 0 0 0 chr5 134665589 134665638 -17871621 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1612 201 147 0 0 chr5 134665641 134665675 -17871584 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1612 386 298 88 37 chr5 134665687 134665823 -17871436 + ID_B1 SINE B4 82 224 0 5 1612 1199 21 14 20 chr5 134665835 134665983 -17871276 + B1_Mus2 SINE Alu 1 147 0 5 1612 1334 114 5 15 chr5 134665993 134666189 -17871070 + B2_Mm2 SINE B2 1 194 -1 5 1612 396 293 58 29 chr5 134666400 134666537 -17870722 + ID_B1 SINE B4 82 222 -2 5 1612 483 293 0 54 chr5 134666574 134666722 -17870537 + B1_Mur4 SINE Alu 6 145 -5 5 1612 287 229 14 28 chr5 134667257 134667329 -17869930 + ID_B1 SINE B4 88 158 -66 5 1612 325 307 0 26 chr5 134667374 134667491 -17869768 - RSINE1 SINE B4 -7 158 45 5 1612 546 16 0 0 chr5 134667497 134667560 -17869699 + (TTATG)n Simple_repeat Simple_repeat 2 64 0 5 1612 619 270 36 36 chr5 134667829 134667994 -17869265 + RSINE1 SINE B4 1 165 0 5 1612 252 0 0 0 chr5 134668095 134668123 -17869136 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1612 1111 55 13 46 chr5 134668123 134668275 -17868984 - B1_Mus1 SINE Alu 0 148 2 5 1612 518 202 101 0 chr5 134668286 134668405 -17868854 - ID_B1 SINE B4 -2 222 92 5 1612 186 43 0 0 chr5 134668700 134668723 -17868536 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 5 1612 317 278 14 0 chr5 134668732 134668804 -17868455 - ID4_ SINE ID -4 79 7 5 1612 801 175 0 7 chr5 134668835 134668973 -17868286 - B1_Mur1 SINE Alu -6 143 7 5 1612 361 272 7 81 chr5 134668870 134669006 -17868253 - MT2B2 LTR ERVL -322 262 137 5 1612 1296 94 33 0 chr5 134669035 134669215 -17868044 - B2_Mm2 SINE B2 -9 186 1 5 1612 441 262 50 116 chr5 134669242 134669423 -17867836 - B3A SINE B2 0 198 30 5 1612 299 263 38 117 chr5 134669513 134669667 -17867592 + B3A SINE B2 69 215 -1 6 1612 254 312 36 79 chr5 134669787 134669926 -17867333 - ORR1D2 LTR MaLR -202 168 36 6 1612 704 179 52 0 chr5 134670001 134670135 -17867124 - B1_Mur4 SINE Alu -1 149 9 6 1612 253 268 104 104 chr5 134670002 134670185 -17867074 - B4A SINE B4 -68 224 42 6 1612 680 254 20 45 chr5 134670215 134670353 -17866906 + B3A SINE B2 2 143 -55 6 1612 351 0 0 0 chr5 134670353 134670392 -17866867 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1612 680 254 20 45 chr5 134670392 134670455 -17866804 + B3A SINE B2 144 198 0 6 1612 231 267 0 16 chr5 134670524 134670585 -17866674 + ID SINE ID 3 62 -162 6 1612 215 304 25 25 chr5 134670585 134670605 -17866654 + ID4_ SINE ID 3 83 0 6 1612 647 140 14 14 chr5 134670876 134671021 -17866238 + (TG)n Simple_repeat Simple_repeat 1 145 0 6 1612 335 206 48 10 chr5 134671027 134671130 -17866129 + (TATG)n Simple_repeat Simple_repeat 2 108 0 6 1612 351 144 19 56 chr5 134671139 134671301 -17865958 + (TG)n Simple_repeat Simple_repeat 1 156 0 6 1612 363 267 41 57 chr5 134671301 134671424 -17865835 - RSINE1 SINE B4 0 165 45 6 1612 318 87 0 0 chr5 134671433 134671479 -17865780 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1612 265 252 17 34 chr5 134671480 134671599 -17865660 + (TATATG)n Simple_repeat Simple_repeat 6 122 0 6 1612 1928 200 114 10 chr5 134671600 134672013 -17865246 - MT2A LTR ERVL -77 456 1 6 1612 237 265 39 10 chr5 134672013 134672116 -17865143 - ORR1D2 LTR MaLR -87 283 178 6 1612 321 26 0 0 chr5 134672116 134672154 -17865105 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1612 553 278 23 0 chr5 134672523 134672656 -17864603 + B1F1 SINE Alu 1 136 -13 6 1612 1553 52 16 5 chr5 134672674 134672866 -17864393 - B2_Mm2 SINE B2 -1 194 1 6 1612 300 154 0 0 chr5 134672905 134672957 -17864302 + GA-rich Low_complexity Low_complexity 1 52 0 6 1612 233 254 29 29 chr5 134672980 134673049 -17864210 + ID4 SINE ID 4 72 -11 6 1612 1357 134 0 24 chr5 134673268 134673546 -17863713 + ZP3AR Satellite Satellite 1 271 0 6 1612 291 321 84 0 chr5 134674026 134674157 -17863102 + ID_B1 SINE B4 83 224 0 6 1612 465 268 15 38 chr5 134674360 134674492 -17862767 + B1_Mur1 SINE Alu 21 149 0 6 1612 29 47 0 0 chr5 134674532 134674575 -17862684 + AT_rich Low_complexity Low_complexity 1 43 0 6 1612 261 164 18 35 chr5 134674597 134674654 -17862605 - B2_Mm2 SINE B2 -94 101 46 6 1612 1110 105 99 0 chr5 134674700 134674862 -17862397 - B2_Mm1t SINE B2 -14 179 2 6 1612 380 308 7 65 chr5 134674900 134675039 -17862220 + MT2B LTR ERVL 127 257 -344 6 1612 741 191 0 0 chr5 134674945 134675071 -17862188 + B1_Mus1 SINE Alu 10 135 -13 6 1612 413 205 76 107 chr5 134675309 134675440 -17861819 + B1F SINE Alu 10 136 -12 6 1612 321 26 0 0 chr5 134675440 134675478 -17861781 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 6 1612 413 221 26 103 chr5 134675478 134675518 -17861741 + B1F SINE Alu 98 137 -12 6 1612 228 67 0 0 chr5 134675518 134675548 -17861711 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 6 1612 294 217 0 148 chr5 134675548 134675588 -17861671 + B1F SINE Alu 69 97 -52 6 1612 234 0 0 0 chr5 134675588 134675614 -17861645 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 6 1612 294 217 0 148 chr5 134675614 134675654 -17861605 + B1F SINE Alu 98 137 -12 6 1612 279 79 0 0 chr5 134675654 134675692 -17861567 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 6 1612 721 247 116 0 chr5 134675703 134675893 -17861366 + B3 SINE B2 2 213 -3 6 1612 544 264 21 0 chr5 134676208 134676348 -17860911 + B1F SINE Alu 7 149 0 6 1612 270 244 23 114 chr5 134676348 134676436 -17860823 + ID4_ SINE ID 2 81 -2 6 1612 1038 113 7 0 chr5 134676511 134676653 -17860606 + B1_Mur4 SINE Alu 1 143 -7 6 1612 435 202 85 0 chr5 134676698 134676792 -17860467 + ID_B1 SINE B4 122 223 -1 6 1612 478 239 92 0 chr5 134677392 134677522 -17859737 + ID_B1 SINE B4 82 223 -1 6 1612 414 273 178 22 chr5 134677543 134677723 -17859536 + B3 SINE B2 2 209 -7 6 1612 1317 27 0 0 chr5 134677734 134677881 -17859378 + B1_Mm SINE Alu 1 147 0 6 1612 1051 122 0 0 chr5 134677922 134678069 -17859190 - B1_Mus2 SINE Alu 0 147 1 6 1612 261 301 28 70 chr5 134678322 134678348 -17858911 - B3A SINE B2 -61 137 1 6 1612 295 313 43 17 chr5 134678348 134678465 -17858794 - B4A SINE B4 -172 120 1 6 1612 381 333 0 47 chr5 134678837 134678868 -17858391 - ID_B1 SINE B4 -3 221 82 6 1612 574 233 0 0 chr5 134678868 134678984 -17858275 - B1_Mur1 SINE Alu -33 116 1 6 1612 426 246 147 7 chr5 134679288 134679431 -17857828 + B4A SINE B4 1 163 -129 6 1612 532 293 68 47 chr5 134679590 134679722 -17857537 + ID_B1 SINE B4 30 163 -61 6 1612 1388 205 99 58 chr5 134679722 134680055 -17857204 - ORR1C1 LTR MaLR 0 378 31 6 1612 1281 77 16 37 chr5 134680055 134680243 -17857016 - B2_Mm2 SINE B2 -10 185 2 6 1612 1388 205 99 58 chr5 134680243 134680272 -17856987 - ORR1C1 LTR MaLR -348 30 2 6 1612 532 293 68 47 chr5 134680272 134680329 -17856930 + ID_B1 SINE B4 164 223 -1 6 1612 1345 56 116 9 chr5 134680338 134680554 -17856705 + 7SK RNA RNA 1 239 -92 6 1612 769 216 203 6 chr5 134680562 134680739 -17856520 + B3 SINE B2 4 215 -1 6 1612 848 208 162 0 chr5 134680899 134681072 -17856187 + B3 SINE B2 2 202 -14 6 1612 2344 148 32 10 chr5 134681076 134681480 -17855779 - MTC LTR MaLR -8 413 1 6 1612 180 0 0 0 chr5 134681487 134681507 -17855752 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1612 293 337 0 0 chr5 134681821 134681913 -17855346 + RSINE1 SINE B4 65 156 -9 6 1612 1029 127 0 0 chr5 134681943 134682093 -17855166 - B1_Mur4 SINE Alu 0 150 1 6 1612 694 164 257 11 chr5 134682186 134682365 -17854894 - ID_B1 SINE B4 0 224 2 6 1612 590 187 0 0 chr5 134682474 134682581 -17854678 - RSINE1 SINE B4 -57 108 2 6 1612 285 191 143 22 chr5 134682876 134682967 -17854292 - B1F SINE Alu 0 149 48 6 1612 227 192 0 19 chr5 134683015 134683068 -17854191 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 6 1612 852 158 14 7 chr5 134683068 134683215 -17854044 - B1_Mur1 SINE Alu 0 149 2 6 1612 270 333 29 0 chr5 134683221 134683326 -17853933 - PB1D10 SINE Alu -5 112 5 6 1612 488 325 6 24 chr5 134683367 134683534 -17853725 - B3A SINE B2 0 198 35 6 1612 276 30 0 0 chr5 134683537 134683570 -17853689 + (CTTG)n Simple_repeat Simple_repeat 1 33 0 6 1612 414 0 0 0 chr5 134683571 134683617 -17853642 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 6 1612 565 117 242 30 chr5 134683618 134683750 -17853509 - B2_Mm2 SINE B2 -34 161 2 6 1612 851 195 7 7 chr5 134683802 134683952 -17853307 + B1_Mur4 SINE Alu 1 150 0 6 1612 268 320 13 0 chr5 134684236 134684311 -17852948 - ID SINE ID -142 82 7 6 1612 847 180 210 17 chr5 134684389 134684570 -17852689 + B3 SINE B2 1 216 0 6 1612 224 184 0 39 chr5 134684591 134684642 -17852617 + PB1D7 SINE Alu 72 120 0 6 1612 1899 164 52 0 chr5 134684943 134685290 -17851969 + ORR1D1 LTR MaLR 10 374 0 6 1612 564 186 7 65 chr5 134685307 134685445 -17851814 - RSINE1 SINE B4 -33 132 3 6 1612 781 141 88 7 chr5 134686296 134686432 -17850827 + B1_Mus1 SINE Alu 2 148 0 6 1612 511 247 106 75 chr5 134686450 134686638 -17850621 + B3A SINE B2 1 194 -4 6 1612 1011 203 105 4 chr5 134686660 134686907 -17850352 - MTEa LTR MaLR -46 333 62 6 1612 249 244 10 109 chr5 134687203 134687304 -17849955 - B3A SINE B2 0 198 108 6 1612 426 258 64 8 chr5 134687285 134687300 -17849959 - ID_B1 SINE B4 -15 209 82 6 1612 627 151 19 0 chr5 134687300 134687406 -17849853 - B1_Mus2 SINE Alu -39 108 1 6 1612 449 232 262 0 chr5 134687430 134687598 -17849661 - B3 SINE B2 0 216 5 6 1612 806 151 56 21 chr5 134687628 134687770 -17849489 - B1_Mur1 SINE Alu -2 147 1 6 1612 796 145 114 0 chr5 134687793 134687924 -17849335 + B1_Mur3 SINE Alu 1 146 -3 6 1612 1242 28 0 14 chr5 134687932 134688078 -17849181 + B1_Mus2 SINE Alu 3 146 -1 6 1612 202 89 14 69 chr5 134688078 134688150 -17849109 + (CAAA)n Simple_repeat Simple_repeat 1 68 0 6 1612 31 0 0 0 chr5 134688150 134688181 -17849078 + AT_rich Low_complexity Low_complexity 1 31 0 6 1612 576 242 98 27 chr5 134688342 134688525 -17848734 + B3A SINE B2 3 198 0 6 1612 1399 73 40 0 chr5 134688533 134688710 -17848549 + B2_Mm2 SINE B2 2 185 -10 6 1612 781 258 16 10 chr5 134689033 134689225 -17848034 - B3A SINE B2 -5 193 1 6 1612 275 330 46 19 chr5 134689427 134689535 -17847724 - B1F1 SINE Alu -37 112 2 6 1612 323 317 15 68 chr5 134689462 134689543 -17847716 - ID_B1 SINE B4 -71 153 78 6 1612 239 339 103 17 chr5 134689543 134689660 -17847599 - PB1 SINE Alu 0 127 1 6 1612 323 317 15 68 chr5 134689660 134689710 -17847549 - ID SINE ID -147 77 29 6 1612 705 228 76 0 chr5 134690222 134690367 -17846892 - RSINE1 SINE B4 -6 159 4 6 1612 289 284 0 0 chr5 134690679 134690760 -17846499 - ID4 SINE ID -1 82 2 6 1612 373 260 10 10 chr5 134690811 134690912 -17846347 - PB1D9 SINE Alu -19 101 1 6 1612 608 266 45 59 chr5 134690920 134691140 -17846119 - ID_B1 SINE B4 -7 217 1 6 1612 429 204 133 19 chr5 134691237 134691342 -17845917 + PB1D10 SINE Alu 1 117 0 6 1612 450 254 16 48 chr5 134691505 134691629 -17845630 + PB1D7 SINE Alu 1 120 0 6 1612 711 204 7 22 chr5 134691652 134691787 -17845472 + B1_Mm SINE Alu 2 134 -13 6 1612 410 281 35 21 chr5 134691812 134691954 -17845305 + ID_B1 SINE B4 81 224 0 7 1612 1199 207 12 0 chr5 134691992 134692238 -17845021 + Charlie8 DNA MER1_type 368 616 -1812 7 1612 4796 308 5 0 chr5 134692260 134693541 -17843718 + Charlie8 DNA MER1_type 761 2047 -381 7 1612 405 227 10 49 chr5 134693592 134693694 -17843565 + PB1D10 SINE Alu 14 111 -6 7 1612 183 42 0 0 chr5 134694014 134694038 -17843221 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1612 206 255 43 0 chr5 134694232 134694279 -17842980 + polypyrimidine Low_complexity Low_complexity 1 49 0 7 1612 283 241 23 29 chr5 134694279 134694450 -17842809 + CT-rich Low_complexity Low_complexity 5 174 0 7 1612 351 276 20 20 chr5 134694477 134694577 -17842682 - PB1D10 SINE Alu -13 104 5 7 1612 308 228 20 89 chr5 134694897 134694998 -17842261 + MT2B LTR ERVL 164 257 -344 7 1612 732 138 8 23 chr5 134694912 134695030 -17842229 + B1_Mus2 SINE Alu 17 134 -13 7 1612 486 0 0 0 chr5 134695030 134695084 -17842175 + (GGA)n Simple_repeat Simple_repeat 1 54 0 7 1612 732 138 8 23 chr5 134695084 134695098 -17842161 + B1_Mus2 SINE Alu 135 147 0 7 1612 273 370 8 0 chr5 134695450 134695577 -17841682 + ID_B1 SINE B4 86 213 -11 7 1612 375 78 0 0 chr5 134695582 134695633 -17841626 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1612 1255 41 0 0 chr5 134695736 134695883 -17841376 + B1_Mus2 SINE Alu 1 147 0 7 1612 2145 106 89 137 chr5 134696078 134696455 -17840804 - MTC LTR MaLR -4 417 63 7 1612 576 230 298 0 chr5 134696455 134696616 -17840643 - B3 SINE B2 -5 211 3 7 1612 2145 106 89 137 chr5 134696616 134696675 -17840584 - MTC LTR MaLR -359 62 2 7 1612 388 284 46 146 chr5 134696853 134697092 -17840167 - ID_B1 SINE B4 -9 215 1 7 1612 1228 145 16 102 chr5 134697097 134697342 -17839917 - URR1B DNA MER1_type 0 225 2 7 1612 785 152 70 28 chr5 134698918 134699060 -17838199 + B1_Mur4 SINE Alu 3 150 0 7 1612 395 291 70 38 chr5 134699503 134699689 -17837570 - B2_Mm2 SINE B2 -3 192 1 7 1612 1283 51 0 8 chr5 134699659 134699846 -17837413 - ZP3AR Satellite Satellite -34 185 1 7 1612 1403 202 97 37 chr5 134699887 134700267 -17836992 + MTD LTR MaLR 3 405 -14 7 1612 430 231 14 0 chr5 134700288 134700431 -17836828 + (CA)n Simple_repeat Simple_repeat 1 145 0 7 1612 350 280 88 36 chr5 134700436 134700573 -17836686 - B1F SINE Alu -3 146 3 7 1612 1198 54 0 33 chr5 134700600 134700752 -17836507 - B1_Mus2 SINE Alu 0 147 1 7 1612 1375 86 11 0 chr5 134701861 134702047 -17835212 - B2_Mm1a SINE B2 -4 189 2 7 1612 383 200 50 0 chr5 134702070 134702150 -17835109 - B1F2 SINE Alu -5 144 61 7 1612 538 202 43 26 chr5 134702185 134702302 -17834957 - ID_B1 SINE B4 -2 222 104 7 1612 257 239 127 0 chr5 134703416 134703487 -17833772 + ID4 SINE ID 2 81 -2 7 1612 612 235 111 0 chr5 134703438 134703591 -17833668 + ID_B1 SINE B4 34 203 -21 7 1612 459 0 0 0 chr5 134703716 134703767 -17833492 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1612 347 135 120 13 chr5 134703793 134703868 -17833391 - B1F1 SINE Alu -1 148 66 7 1612 430 219 3 118 chr5 134704837 134705187 -17832072 + C-rich Low_complexity Low_complexity 1 309 0 7 1612 301 310 17 28 chr5 134705106 134705282 -17831977 + CT-rich Low_complexity Low_complexity 5 178 0 7 1612 1457 78 0 10 chr5 134705711 134705905 -17831354 + B2_Mm2 SINE B2 1 192 -3 7 1612 774 46 0 18 chr5 134705917 134706027 -17831232 + B1_Mm SINE Alu 40 147 0 7 1612 564 216 0 0 chr5 134706028 134706130 -17831129 + ID_B1 SINE B4 102 203 -21 7 1612 400 257 24 81 chr5 134706130 134706151 -17831108 + B1_Mur4 SINE Alu 22 137 -13 7 1612 386 218 0 0 chr5 134706167 134706245 -17831014 + B4 SINE B4 9 86 -206 7 1612 669 107 0 28 chr5 134706253 134706359 -17830900 + B2_Mm2 SINE B2 2 104 -91 7 1612 429 63 305 59 chr5 134706451 134706555 -17830704 + B2_Mm2 SINE B2 49 185 -10 7 1612 1205 69 0 0 chr5 134706555 134706699 -17830560 + B1_Mm SINE Alu 1 144 -3 7 1612 429 63 305 59 chr5 134706699 134706712 -17830547 + B2_Mm2 SINE B2 186 195 0 7 1612 210 37 0 0 chr5 134706748 134706775 -17830484 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1612 320 330 9 9 chr5 134706775 134706885 -17830374 - B3A SINE B2 -86 112 3 7 1612 1002 124 21 0 chr5 134706908 134707053 -17830206 - B1_Mus1 SINE Alu 0 148 1 7 1612 464 260 19 0 chr5 134707064 134707168 -17830091 + B4 SINE B4 120 225 -67 7 1612 276 133 133 0 chr5 134707567 134707627 -17829632 + PB1D9 SINE Alu 44 111 -9 7 1612 871 134 14 0 chr5 134707648 134707790 -17829469 + B1_Mur4 SINE Alu 6 149 -1 7 1612 1396 59 48 11 chr5 134707796 134707983 -17829276 + B2_Mm2 SINE B2 1 194 -1 7 1612 238 300 18 91 chr5 134708199 134708309 -17828950 - ZP3AR Satellite Satellite -70 142 41 7 1612 310 184 47 75 chr5 134708930 134709036 -17828223 - PB1D7 SINE Alu 0 120 18 7 1612 226 263 0 50 chr5 134709142 134709202 -17828057 - RSINE1 SINE B4 -42 123 67 7 1612 429 20 0 0 chr5 134709419 134709469 -17827790 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1612 384 280 30 0 chr5 134709629 134709729 -17827530 - B3 SINE B2 -11 205 103 7 1612 321 123 18 0 chr5 134709729 134709786 -17827473 - B1_Mus1 SINE Alu -89 59 2 7 1612 351 291 24 40 chr5 134709790 134709914 -17827345 - B3A SINE B2 0 198 61 7 1612 195 100 0 0 chr5 134709970 134710000 -17827259 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 7 1612 213 237 34 0 chr5 134710357 134710416 -17826843 + CT-rich Low_complexity Low_complexity 1 61 0 7 1612 523 108 10 51 chr5 134710416 134710514 -17826745 - B1_Mur3 SINE Alu -15 134 41 7 1612 199 233 165 11 chr5 134710844 134710935 -17826324 + MIRc SINE MIR 43 147 -121 7 1612 196 225 137 27 chr5 134710904 134710977 -17826282 + MIRb SINE MIR 118 198 -70 7 1612 324 0 0 0 chr5 134711082 134711118 -17826141 + (TG)n Simple_repeat Simple_repeat 1 36 0 7 1612 283 256 115 0 chr5 134711318 134711396 -17825863 - ID SINE ID -135 89 3 7 1612 363 188 118 0 chr5 134711442 134711527 -17825732 - RSINE1 SINE B4 -15 150 56 7 1612 928 197 56 51 chr5 134711624 134711838 -17825421 + B3 SINE B2 2 216 0 7 1612 457 250 42 0 chr5 134712365 134712461 -17824798 - ID_B1 SINE B4 -6 218 119 7 1612 344 236 200 0 chr5 134712461 134712472 -17824787 - B1F SINE Alu -3 143 15 7 1612 339 152 15 15 chr5 134715145 134715212 -17822047 - PB1D9 SINE Alu -13 107 41 7 1612 1076 157 103 20 chr5 134715804 134715999 -17821260 + B3 SINE B2 2 212 -4 7 1612 511 281 123 11 chr5 134716278 134716465 -17820794 - B3 SINE B2 -4 212 5 7 1612 335 250 37 46 chr5 134716853 134716962 -17820297 + RSINE1 SINE B4 16 123 -42 7 1612 369 196 47 132 chr5 134717215 134717344 -17819915 + PB1D9 SINE Alu 2 119 -1 7 1612 431 217 24 65 chr5 134717391 134717514 -17819745 - RSINE1 SINE B4 -1 164 47 7 1612 394 309 40 34 chr5 134717492 134717698 -17819561 - ID_B1 SINE B4 -24 268 66 7 1612 274 253 0 39 chr5 134718286 134718364 -17818895 - PB1D9 SINE Alu -3 117 43 7 1612 820 229 60 65 chr5 134718973 134719188 -17818071 - B3 SINE B2 0 216 3 7 1612 396 332 63 15 chr5 134720261 134720466 -17816793 - B4A SINE B4 -71 221 7 7 1612 904 150 0 0 chr5 134721138 134721285 -17815974 - B1_Mus2 SINE Alu 0 147 1 7 1612 622 283 61 32 chr5 134721444 134721711 -17815548 + RLTR12B LTR ERVK 47 304 -224 7 1612 807 66 0 0 chr5 134721847 134721953 -17815306 + (TC)n Simple_repeat Simple_repeat 2 107 0 7 1612 856 186 62 0 chr5 134723246 134723407 -17813852 - B3 SINE B2 -30 186 16 7 1612 1594 177 45 84 chr5 134723418 134723800 -17813459 + ORR1C2 LTR MaLR 11 377 -7 7 1612 2159 228 92 16 chr5 134723800 134724374 -17812885 + ORR1C2-int LTR MaLR 2 619 -890 7 1612 2134 165 209 16 chr5 134724375 134724929 -17812330 + ORR1C2-int LTR MaLR 849 1509 0 7 1612 960 222 203 45 chr5 134724930 134725260 -17811999 + ORR1C2 LTR MaLR 2 383 -1 7 1612 335 216 71 20 chr5 134725383 134725482 -17811777 + ZP3AR Satellite Satellite 45 148 -64 7 1612 256 270 68 0 chr5 134725482 134725556 -17811703 + ID4_ SINE ID 1 79 -4 7 1612 816 187 131 21 chr5 134726071 134726262 -17810997 + B3 SINE B2 5 216 0 7 1612 227 100 0 57 chr5 134726275 134726328 -17810931 + A-rich Low_complexity Low_complexity 1 50 0 7 1612 1190 55 7 0 chr5 134726328 134726473 -17810786 + B1_Mus2 SINE Alu 1 146 -1 7 1612 2577 140 11 33 chr5 134726494 134726951 -17810308 + RMER6A LTR ERVK 310 756 0 7 1612 294 184 0 0 chr5 134726951 134727000 -17810259 - B1F SINE Alu -98 51 3 7 1612 485 257 137 8 chr5 134727042 134727199 -17810060 - B3 SINE B2 -33 160 2 7 1612 618 164 96 7 chr5 134728339 134728474 -17808785 - B1_Mus1 SINE Alu 0 148 2 7 1612 267 337 11 11 chr5 134728536 134728629 -17808630 + RMER15-int LTR ERVL 4848 4940 -59 7 1612 1150 133 23 0 chr5 134729777 134729950 -17807309 + B2_Mm1t SINE B2 3 179 -14 7 1612 331 132 0 36 chr5 134729963 134730030 -17807229 + B2_Mm2 SINE B2 47 109 -107 7 1612 24 32 0 0 chr5 134730042 134730073 -17807186 + AT_rich Low_complexity Low_complexity 1 31 0 7 1612 525 274 88 33 chr5 134730144 134730177 -17807082 - B3A SINE B2 -2 196 167 7 1612 348 24 0 0 chr5 134730177 134730218 -17807041 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1612 525 274 88 33 chr5 134730218 134730365 -17806894 - B3A SINE B2 -32 166 6 7 1612 453 242 24 22 chr5 134730522 134730725 -17806534 + B1_Mus2 SINE Alu 1 144 -5 7 1612 22 35 0 0 chr5 134730804 134730833 -17806426 + AT_rich Low_complexity Low_complexity 1 29 0 7 1612 282 214 100 11 chr5 134731979 134732069 -17805190 + PB1D10 SINE Alu 1 98 -49 7 1612 349 339 89 85 chr5 134732081 134732130 -17805129 + HAL1-3A_ME LINE L1 2168 2228 -630 7 1612 477 0 0 0 chr5 134732130 134732183 -17805076 + (TG)n Simple_repeat Simple_repeat 1 53 0 7 1612 349 339 89 85 chr5 134732183 134732257 -17805002 + HAL1-3A_ME LINE L1 2229 2288 -570 7 1612 1199 75 0 0 chr5 134732257 134732404 -17804855 + B1_Mus2 SINE Alu 1 147 0 8 1612 349 339 89 85 chr5 134732404 134732550 -17804709 + HAL1-3A_ME LINE L1 2289 2438 -420 7 1612 906 0 0 121 chr5 134732554 134732752 -17804507 + (GGAAA)n Simple_repeat Simple_repeat 3 176 0 8 1612 998 280 34 31 chr5 134732940 134733231 -17804028 - B4 SINE B4 0 292 1 8 1612 346 259 24 72 chr5 134733461 134733586 -17803673 + PB1D9 SINE Alu 2 120 0 8 1612 927 186 0 0 chr5 134734143 134734288 -17802971 + B1_Mur4 SINE Alu 1 145 -5 8 1612 791 214 101 0 chr5 134735242 134735410 -17801849 + B3A SINE B2 1 185 -13 8 1612 470 203 194 7 chr5 134735537 134735681 -17801578 + ETnERV2-int LTR ERVK 6255 6425 -981 8 1612 352 94 0 36 chr5 134735893 134735948 -17801311 + ETnERV2-int LTR ERVK 7331 7383 -23 8 1612 2900 107 22 2 chr5 134735968 134736380 -17800879 + RLTR9B2 LTR ERVK 1 420 0 8 1612 271 148 127 13 chr5 134736789 134736876 -17800383 - B1_Mur1 SINE Alu -8 141 13 8 1612 767 271 174 20 chr5 134736955 134737287 -17799972 + MTD LTR MaLR 15 366 -13 8 1612 949 100 131 29 chr5 134737428 134737603 -17799656 - B2_Mm2 SINE B2 -2 193 1 8 1612 28 0 0 0 chr5 134738015 134738043 -17799216 + AT_rich Low_complexity Low_complexity 1 28 0 8 1612 420 217 0 35 chr5 134738456 134738542 -17798717 - B1_Mur2 SINE Alu -50 99 17 8 1612 462 268 33 44 chr5 134738729 134738756 -17798503 + CYRA11_Mm Unknown Y-chromosome 145 321 -295 8 1612 916 153 0 13 chr5 134738756 134738908 -17798351 - URR1A DNA MER1_type 0 226 77 8 1612 242 264 115 69 chr5 134739033 134739163 -17798096 + B4A SINE B4 3 138 -154 8 1612 411 200 110 0 chr5 134740218 134740318 -17796941 + PB1D9 SINE Alu 10 120 0 8 1612 1439 70 37 0 chr5 134740617 134740804 -17796455 + B2_Mm2 SINE B2 2 195 0 8 1612 258 235 176 0 chr5 134740911 134740996 -17796263 + B3A SINE B2 1 100 -98 8 1612 399 270 35 0 chr5 134741126 134741241 -17796018 + PB1D9 SINE Alu 1 119 -1 8 1612 180 77 0 0 chr5 134741246 134741272 -17795987 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1612 1589 32 11 0 chr5 134741303 134741490 -17795769 - B2_Mm1a SINE B2 -4 189 1 8 1612 261 0 0 0 chr5 134741949 134741978 -17795281 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1613 365 244 26 0 chr5 134743044 134743122 -17794137 - PB1D10 SINE Alu -37 80 1 8 1613 489 231 102 0 chr5 134743415 134743523 -17793736 + PB1D9 SINE Alu 2 120 0 8 1613 395 266 21 0 chr5 134743530 134743624 -17793635 + ID_B1 SINE B4 124 219 -5 8 1613 509 207 103 109 chr5 134743824 134744008 -17793251 + ID_B1 SINE B4 42 224 0 8 1613 213 39 0 0 chr5 134744095 134744121 -17793138 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 8 1613 1121 45 0 8 chr5 134744121 134744255 -17793004 + B1_Mus2 SINE Alu 5 137 -10 8 1613 221 0 0 33 chr5 134744255 134744285 -17792974 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1613 615 176 20 0 chr5 134744359 134744461 -17792798 + PB1D9 SINE Alu 2 105 -15 8 1613 467 261 59 0 chr5 134746160 134746279 -17790980 - B3 SINE B2 -6 210 85 8 1613 801 184 7 20 chr5 134746449 134746599 -17790660 + B1_Mur2 SINE Alu 2 149 0 8 1613 460 170 330 0 chr5 134746615 134746721 -17790538 + B1_Mur4 SINE Alu 2 142 -8 8 1613 519 226 29 0 chr5 134746987 134747089 -17790170 - RSINE1 SINE B4 -58 107 3 8 1613 390 257 93 108 chr5 134747594 134747808 -17789451 + MT2B LTR ERVL 59 269 -332 8 1613 838 124 0 15 chr5 134747713 134747844 -17789415 + B1_Mur1 SINE Alu 21 149 0 8 1613 24 0 0 0 chr5 134747886 134747910 -17789349 + AT_rich Low_complexity Low_complexity 1 24 0 8 1613 444 312 0 0 chr5 134747989 134748085 -17789174 + PB1 SINE Alu 3 98 -29 8 1613 228 171 108 139 chr5 134748351 134748480 -17788779 - MER88 LTR ERVL -327 137 13 8 1613 995 136 0 7 chr5 134749407 134749555 -17787704 - B1F1 SINE Alu -1 148 2 8 1613 34 42 0 0 chr5 134750499 134750547 -17786712 + AT_rich Low_complexity Low_complexity 1 48 0 8 1613 28 48 0 0 chr5 134750563 134750605 -17786654 + AT_rich Low_complexity Low_complexity 1 42 0 8 1613 23 0 0 0 chr5 134752088 134752111 -17785148 + AT_rich Low_complexity Low_complexity 1 23 0 8 1613 255 114 0 0 chr5 134752859 134752903 -17784356 + (A)n Simple_repeat Simple_repeat 1 44 0 8 1613 242 281 98 0 chr5 134753058 134753140 -17784119 - PB1D10 SINE Alu -11 106 17 8 1613 381 274 74 14 chr5 134753070 134753218 -17784041 - ID_B1 SINE B4 -54 170 14 8 1613 717 135 8 23 chr5 134753450 134753579 -17783680 - URR1B DNA MER1_type 0 225 99 8 1613 714 45 0 0 chr5 134753580 134753668 -17783591 + BC1_Mm scRNA scRNA 1 88 -64 8 1613 314 128 0 0 chr5 134753674 134753721 -17783538 - URR1A DNA MER1_type -132 94 48 8 1613 315 122 0 0 chr5 134753952 134754001 -17783258 + (GGGA)n Simple_repeat Simple_repeat 1 49 0 8 1613 280 250 11 64 chr5 134754120 134754214 -17783045 + ID_B1 SINE B4 118 206 -18 8 1613 784 171 13 40 chr5 134754267 134754419 -17782840 + B1_Mur2 SINE Alu 2 149 0 8 1613 366 273 57 0 chr5 134754653 134754741 -17782518 + RSINE1 SINE B4 2 94 -71 8 1613 253 241 284 11 chr5 134754995 134755021 -17782238 - PB1D9 SINE Alu -3 117 92 8 1613 432 0 0 0 chr5 134755021 134755069 -17782190 + (TATG)n Simple_repeat Simple_repeat 3 50 0 8 1613 285 203 65 3 chr5 134755069 134755130 -17782129 - B1F1 SINE Alu -29 91 6 8 1613 180 111 0 0 chr5 134755541 134755568 -17781691 + (CAGA)n Simple_repeat Simple_repeat 3 29 0 8 1613 239 250 23 23 chr5 134755844 134755930 -17781329 + L1M4 LINE L1 4999 5084 -1062 8 1613 279 244 6 229 chr5 134756188 134756260 -17780999 + B3 SINE B2 47 97 -119 8 1613 1209 48 0 13 chr5 134756260 134756409 -17780850 - B1_Mus1 SINE Alu 0 148 2 8 1613 316 271 0 68 chr5 134756409 134756512 -17780747 + B3A SINE B2 88 183 -15 8 1613 632 237 29 7 chr5 134756524 134756660 -17780599 - B1_Mus1 SINE Alu -9 139 1 8 1613 1441 85 0 5 chr5 134756679 134756868 -17780391 + B2_Mm2 SINE B2 1 188 -7 8 1613 522 196 0 0 chr5 134756921 134757028 -17780231 + Lx9 LINE L1 7529 7635 -9 8 1613 594 192 107 8 chr5 134757050 134757171 -17780088 + B1_Mm SINE Alu 1 133 -14 8 1613 563 108 11 0 chr5 134757176 134757269 -17779990 + (GGGA)n Simple_repeat Simple_repeat 1 94 0 8 1613 1460 53 0 36 chr5 134757309 134757503 -17779756 + B2_Mm2 SINE B2 1 187 -8 8 1613 331 261 183 8 chr5 134757547 134757678 -17779581 + L1MD LINE L1 5153 5306 -840 8 1613 351 318 40 40 chr5 134757707 134757884 -17779375 + B4 SINE B4 1 177 -115 8 1613 216 67 0 0 chr5 134757964 134757994 -17779265 + (TC)n Simple_repeat Simple_repeat 2 31 0 8 1613 351 0 0 0 chr5 134757994 134758033 -17779226 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1613 255 294 157 65 chr5 134758101 134758363 -17778896 + B4A SINE B4 1 286 -6 8 1613 241 337 42 10 chr5 134758475 134758571 -17778688 + PB1D10 SINE Alu 1 99 -18 8 1613 323 260 39 39 chr5 134758843 134758947 -17778312 + PB1D7 SINE Alu 17 120 0 8 1613 294 121 40 15 chr5 134759193 134759304 -17777955 - B1_Mur4 SINE Alu 0 147 1 8 1613 228 287 53 0 chr5 134759518 134759612 -17777647 + L1MB7 LINE L1 6023 6121 -63 8 1613 311 206 176 0 chr5 134759656 134759724 -17777535 + PB1D10 SINE Alu 27 106 -11 8 1613 1120 150 63 76 chr5 134760014 134760252 -17777007 - RMER4A LTR ERVK 0 466 232 8 1613 320 283 43 0 chr5 134760518 134760610 -17776649 - PB1D10 SINE Alu -21 96 1 8 1613 25 0 0 0 chr5 134761506 134761531 -17775728 + AT_rich Low_complexity Low_complexity 1 25 0 8 1613 387 0 0 0 chr5 134761670 134761713 -17775546 + (TG)n Simple_repeat Simple_repeat 1 43 0 8 1613 1532 57 16 5 chr5 134761827 134762020 -17775239 + B2_Mm2 SINE B2 1 195 0 8 1613 581 298 79 28 chr5 134762974 134763188 -17774071 + B4A SINE B4 1 225 -67 8 1613 1042 202 19 10 chr5 134763190 134763395 -17773864 + B3 SINE B2 1 207 -9 8 1613 25 0 0 0 chr5 134763398 134763423 -17773836 + AT_rich Low_complexity Low_complexity 1 25 0 8 1613 644 274 6 37 chr5 134763435 134763598 -17773661 + RSINE1 SINE B4 5 162 -3 8 1613 270 0 0 0 chr5 134763693 134763723 -17773536 + (CA)n Simple_repeat Simple_repeat 2 31 0 8 1613 897 122 7 21 chr5 134763804 134763946 -17773313 + B1_Mus2 SINE Alu 8 147 0 8 1613 317 234 103 7 chr5 134764136 134764247 -17773012 + PB1 SINE Alu 1 123 -4 8 1613 26 50 0 0 chr5 134764327 134764367 -17772892 + AT_rich Low_complexity Low_complexity 1 40 0 8 1613 447 271 31 8 chr5 134764460 134764590 -17772669 + RSINE1 SINE B4 4 136 -29 8 1613 384 22 0 0 chr5 134764612 134764657 -17772602 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1613 294 267 0 0 chr5 134764683 134764743 -17772516 - PB1D9 SINE Alu -6 114 55 8 1613 222 308 121 15 chr5 134764937 134765069 -17772190 + RSINE1 SINE B4 17 162 -3 8 1613 702 247 6 34 chr5 134765440 134765616 -17771643 - MTD LTR MaLR -247 172 2 8 1613 282 261 13 13 chr5 134765865 134765940 -17771319 + ID_B1 SINE B4 86 157 -67 8 1613 586 249 192 6 chr5 134765940 134766122 -17771137 + B3 SINE B2 1 216 0 8 1613 282 308 0 64 chr5 134766122 134766188 -17771071 + ID_B1 SINE B4 158 216 -8 8 1613 282 248 577 7 chr5 134766193 134766333 -17770926 + ID_B1 SINE B4 2 221 -3 8 1613 238 310 28 0 chr5 134766433 134766504 -17770755 - ID4_ SINE ID -10 73 1 8 1613 375 179 292 9 chr5 134766853 134766966 -17770293 + B1_Mus2 SINE Alu 3 147 0 8 1613 799 136 55 41 chr5 134767870 134768016 -17769243 + B1_Mur4 SINE Alu 1 148 -2 8 1613 190 51 77 0 chr5 134768148 134768187 -17769072 + (TTTTA)n Simple_repeat Simple_repeat 3 44 0 8 1613 1241 35 0 0 chr5 134768193 134768335 -17768924 - B1_Mm SINE Alu -5 142 1 8 1613 262 0 26 26 chr5 134769564 134769603 -17767656 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1613 1270 27 0 0 chr5 134769856 134770002 -17767257 + B1_Mus2 SINE Alu 2 147 0 9 1613 874 16 6 210 chr5 134770073 134770235 -17767024 - B1_Mus2 SINE Alu -1 146 18 9 1613 1213 55 0 7 chr5 134770380 134770527 -17766732 + B1_Mm SINE Alu 2 147 0 9 1613 183 146 0 0 chr5 134770528 134770569 -17766690 + (A)n Simple_repeat Simple_repeat 1 41 0 9 1613 286 268 0 118 chr5 134770874 134770984 -17766275 - PB1D9 SINE Alu 0 120 24 9 1613 213 183 62 62 chr5 134771249 134771313 -17765946 + ID4 SINE ID 19 82 -1 9 1613 477 246 192 0 chr5 134772189 134772376 -17764883 + ID_B1 SINE B4 2 224 0 9 1613 1842 177 35 42 chr5 134772395 134772772 -17764487 + ORR1D1 LTR MaLR 1 374 0 9 1613 669 130 8 75 chr5 134772952 134773085 -17764174 + B1_Mus2 SINE Alu 23 146 -1 9 1613 207 0 0 0 chr5 134773172 134773195 -17764064 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1613 1222 50 0 0 chr5 134773197 134773337 -17763922 - B1_Mus2 SINE Alu -7 140 1 9 1613 1142 29 0 68 chr5 134773372 134773519 -17763740 - B1_Mus2 SINE Alu -9 138 2 9 1613 513 144 19 67 chr5 134774506 134774610 -17762649 + PB1D9 SINE Alu 21 119 -1 9 1613 1007 98 7 0 chr5 134775390 134775524 -17761735 + B1_Mus1 SINE Alu 5 139 -9 9 1613 257 0 30 0 chr5 134775524 134775557 -17761702 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 9 1613 1545 58 5 0 chr5 134775631 134775822 -17761437 - B2_Mm1a SINE B2 0 193 2 9 1613 1328 73 11 0 chr5 134775961 134776139 -17761120 - B2_Mm1t SINE B2 -9 184 5 9 1613 198 0 0 0 chr5 134776244 134776266 -17760993 + (T)n Simple_repeat Simple_repeat 1 22 0 9 1613 1204 68 0 0 chr5 134776266 134776414 -17760845 - B1_Mus1 SINE Alu 0 148 1 9 1613 530 319 14 7 chr5 134776533 134776672 -17760587 - RSINE1 SINE B4 -21 144 5 9 1613 1076 184 14 51 chr5 134776687 134776904 -17760355 - B3 SINE B2 -6 210 2 9 1613 299 169 62 0 chr5 134777366 134777431 -17759828 + PB1D7 SINE Alu 39 107 -13 9 1613 1801 148 115 12 chr5 134777890 134778212 -17759047 + ORR1B1 LTR MaLR 2 356 -38 9 1613 754 211 28 9 chr5 134778479 134778642 -17758617 - B3 SINE B2 0 198 27 9 1613 1076 116 0 13 chr5 134778653 134778802 -17758457 - B1_Mus2 SINE Alu 0 147 1 9 1613 525 205 278 6 chr5 134778805 134778967 -17758292 - B3 SINE B2 -8 208 3 9 1613 306 73 0 0 chr5 134778981 134779022 -17758237 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 9 1613 314 236 16 172 chr5 134779109 134779237 -17758022 + MT2B LTR ERVL 133 240 -361 9 1613 487 180 35 130 chr5 134779162 134779277 -17757982 + B1_Mur2 SINE Alu 17 120 -29 9 1613 351 0 0 0 chr5 134779277 134779316 -17757943 + (CA)n Simple_repeat Simple_repeat 2 40 0 9 1613 309 267 67 0 chr5 134779590 134779695 -17757564 - Tigger7 DNA MER2_type -58 2433 2322 9 1613 535 298 134 45 chr5 134779928 134780241 -17757018 - Tigger7 DNA MER2_type -1866 625 285 9 1613 835 75 11 6 chr5 134780943 134781074 -17756185 + B1_Mus2 SINE Alu 14 141 -8 9 1613 229 26 26 26 chr5 134781074 134781113 -17756146 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1613 351 76 365 18 chr5 134781531 134781638 -17755621 - B2_Mm2 SINE B2 -5 190 47 9 1613 1207 121 11 0 chr5 134781687 134781861 -17755398 - B2_Mm1t SINE B2 -16 177 2 9 1613 473 282 117 0 chr5 134782307 134782470 -17754789 + ID_B1 SINE B4 1 182 -42 9 1613 1401 78 5 40 chr5 134782619 134782819 -17754440 + B2_Mm1a SINE B2 1 193 0 9 1613 1184 82 0 0 chr5 134782830 134782977 -17754282 + B1_Mus1 SINE Alu 2 148 0 9 1613 544 233 14 57 chr5 134783127 134783268 -17753991 - B1_Mur1 SINE Alu -13 136 2 9 1613 504 172 142 20 chr5 134783274 134783422 -17753837 + RCHARR1 DNA MER1_type 792 957 -17 9 1613 354 154 141 0 chr5 134783542 134783620 -17753639 + PB1D10 SINE Alu 9 97 -20 9 1613 585 293 129 8 chr5 134783625 134783866 -17753393 - B4 SINE B4 -21 271 2 9 1613 277 219 62 0 chr5 134784354 134784418 -17752841 + ID4_ SINE ID 5 72 -11 9 1613 434 184 0 0 chr5 134784432 134784508 -17752751 + B3A SINE B2 1 76 -122 9 1613 409 310 70 54 chr5 134784509 134784751 -17752508 - L1M4 LINE L1 -3664 2482 2237 9 1613 1637 42 0 0 chr5 134784775 134784964 -17752295 - B2_Mm1a SINE B2 -3 190 2 9 1613 770 83 9 0 chr5 134784967 134785076 -17752183 - B1_Mur4 SINE Alu 0 150 41 9 1613 650 236 63 47 chr5 134785133 134785324 -17751935 - B3A SINE B2 -3 195 2 9 1613 519 254 146 39 chr5 134785445 134785650 -17751609 - B4A SINE B4 0 292 66 9 1613 345 186 20 131 chr5 134786194 134786293 -17750966 + B1_Mur1 SINE Alu 57 144 -5 9 1613 252 209 79 34 chr5 134786320 134786409 -17750850 + B4 SINE B4 1 93 -199 9 1613 493 193 228 0 chr5 134786578 134786692 -17750567 - B1_Mur2 SINE Alu -8 141 2 9 1613 220 293 60 24 chr5 134787328 134787412 -17749847 + B1_Mur1 SINE Alu 28 114 -35 9 1613 1154 68 0 7 chr5 134787636 134787783 -17749476 + B1_Mus2 SINE Alu 2 147 0 9 1613 330 281 45 0 chr5 134787973 134788062 -17749197 + B1F SINE Alu 48 140 -9 9 1613 229 298 53 0 chr5 134788132 134788189 -17749070 + BC1_Mm scRNA scRNA 1 60 -92 9 1613 324 120 0 0 chr5 134788418 134788468 -17748791 + (A)n Simple_repeat Simple_repeat 1 50 0 9 1613 486 241 8 8 chr5 134788802 134788919 -17748340 + ID_B1 SINE B4 99 215 -9 9 1613 264 286 47 101 chr5 134788805 134788953 -17748306 - YREP_Mm Unknown Unknown -1516 296 157 9 1613 547 204 78 35 chr5 134788958 134789100 -17748159 + B1_Mur2 SINE Alu 2 149 0 9 1613 343 168 0 21 chr5 134789540 134789637 -17747622 + (CA)n Simple_repeat Simple_repeat 2 96 0 9 1613 21 0 0 0 chr5 134789682 134789703 -17747556 + GC_rich Low_complexity Low_complexity 1 21 0 9 1613 306 148 0 0 chr5 134790590 134790644 -17746615 + (T)n Simple_repeat Simple_repeat 1 54 0 9 1613 180 152 0 0 chr5 134791506 134791539 -17745720 + T-rich Low_complexity Low_complexity 1 33 0 9 1613 913 296 59 32 chr5 134791671 134792045 -17745214 - Tigger13a DNA MER2_type -148 623 240 9 1613 230 222 265 29 chr5 134792053 134792155 -17745104 - Tigger7 DNA MER2_type 0 2491 2366 9 1613 289 257 16 103 chr5 134792161 134792287 -17744972 + PB1D7 SINE Alu 5 119 -1 9 1613 295 211 127 0 chr5 134792368 134792439 -17744820 + ID SINE ID 1 80 -144 9 1613 202 185 18 18 chr5 134792439 134792494 -17744765 + (CATA)n Simple_repeat Simple_repeat 1 55 0 9 1613 456 296 26 0 chr5 134792521 134792636 -17744623 + ID_B1 SINE B4 92 209 -15 9 1613 534 284 60 64 chr5 134792743 134792961 -17744298 - Tigger7 DNA MER2_type -1581 910 694 9 1613 328 283 78 21 chr5 134793062 134793203 -17744056 - Tigger7 DNA MER2_type -1796 695 547 9 1613 233 291 34 112 chr5 134793280 134793369 -17743890 - ID4_ SINE ID 0 83 2 9 1613 496 268 27 27 chr5 134793412 134793558 -17743701 - B1F1 SINE Alu -3 146 1 9 1613 1082 75 0 39 chr5 134793599 134793752 -17743507 + B1_Mus1 SINE Alu 2 148 0 9 1613 213 94 0 0 chr5 134793773 134793805 -17743454 + (A)n Simple_repeat Simple_repeat 1 32 0 9 1613 851 138 46 8 chr5 134793811 134793942 -17743317 + B1_Mus1 SINE Alu 1 136 -12 9 1613 213 39 0 0 chr5 134793944 134793970 -17743289 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 1613 241 258 42 83 chr5 134793976 134794048 -17743211 + B1_Mur4 SINE Alu 1 69 -81 9 1613 437 343 64 32 chr5 134793992 134794179 -17743080 + B4A SINE B4 95 287 -5 9 1613 370 353 36 31 chr5 134794303 134794528 -17742731 - Tigger7 DNA MER2_type -2152 339 114 9 1613 1374 171 53 84 chr5 134794545 134794611 -17742648 + RMER4B LTR ERVK 1 60 -525 9 1613 1379 100 21 0 chr5 134794611 134794801 -17742458 + B2_Mm2 SINE B2 2 195 0 9 1613 1374 171 53 84 chr5 134794801 134795092 -17742167 + RMER4B LTR ERVK 61 347 -238 9 1613 1226 55 0 0 chr5 134795094 134795239 -17742020 + B1_Mus2 SINE Alu 3 147 0 9 1613 180 0 0 0 chr5 134795239 134795259 -17742000 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1613 186 103 0 0 chr5 134795454 134795483 -17741776 + (GCTTG)n Simple_repeat Simple_repeat 1 29 0 9 1613 747 191 8 0 chr5 134795484 134795610 -17741649 - B1_Mur2 SINE Alu -6 143 17 9 1613 595 202 0 42 chr5 134795610 134795729 -17741530 + B1_Mus2 SINE Alu 10 123 -24 9 1613 198 0 0 0 chr5 134795729 134795751 -17741508 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9 1613 740 155 0 0 chr5 134795782 134795898 -17741361 - B4 SINE B4 -69 223 108 9 1613 230 243 110 59 chr5 134795915 134796033 -17741226 - BC1_Mm scRNA scRNA -15 137 14 9 1613 429 218 13 0 chr5 134795962 134796040 -17741219 - B4 SINE B4 -207 85 7 9 1613 876 157 7 7 chr5 134796219 134796367 -17740892 - B1_Mur4 SINE Alu -1 149 2 9 1613 666 207 7 88 chr5 134796369 134796517 -17740742 + B1_Mur1 SINE Alu 12 147 -2 9 1613 452 304 36 7 chr5 134796521 134796660 -17740599 - ID_B1 SINE B4 -13 211 69 9 1613 1251 40 0 20 chr5 134796668 134796819 -17740440 - B1_Mus1 SINE Alu 0 148 1 9 1613 186 118 0 0 chr5 134796829 134796863 -17740396 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 9 1613 1604 43 0 0 chr5 134796907 134797093 -17740166 - B2_Mm1a SINE B2 -7 186 1 9 1613 594 224 0 9 chr5 134797138 134797246 -17740013 - RSINE1 SINE B4 -58 107 1 9 1613 307 325 122 66 chr5 134797401 134797688 -17739571 + RMER5 LTR ERV1 65 367 -167 9 1613 859 98 114 0 chr5 134797809 134797941 -17739318 + B1_Mus1 SINE Alu 1 147 -1 9 1613 227 222 0 0 chr5 134797953 134797998 -17739261 - B3A SINE B2 -153 45 1 9 1613 300 165 33 0 chr5 134798035 134798126 -17739133 + (TG)n Simple_repeat Simple_repeat 1 94 0 9 1613 481 245 51 95 chr5 134798146 134798183 -17739076 - RSINE1 SINE B4 -1 164 121 9 1613 189 0 0 0 chr5 134798183 134798204 -17739055 + (GA)n Simple_repeat Simple_repeat 1 21 0 1 1613 481 245 51 95 chr5 134798204 134798324 -17738935 - RSINE1 SINE B4 -45 120 14 9 1613 300 111 0 0 chr5 134798362 134798407 -17738852 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1613 407 279 65 98 chr5 134798410 134798716 -17738543 - B4A SINE B4 -16 276 3 1 1613 412 114 193 0 chr5 134798734 134798822 -17738437 + URR1B DNA MER1_type 118 222 -3 1 1613 230 273 14 43 chr5 134798890 134798959 -17738300 - ID_B1 SINE B4 -1 223 157 1 1613 314 67 22 0 chr5 134798988 134799033 -17738226 - B1_Mm SINE Alu 0 147 102 1 1613 336 48 0 0 chr5 134799036 134799078 -17738181 + (T)n Simple_repeat Simple_repeat 1 42 0 1 1613 198 0 0 0 chr5 134799108 134799130 -17738129 + (TTAG)n Simple_repeat Simple_repeat 3 24 0 1 1613 1177 71 0 0 chr5 134799130 134799271 -17737988 - B1_Mus1 SINE Alu -7 141 1 1 1613 251 308 66 145 chr5 134799436 134799489 -17737770 + B1_Mur1 SINE Alu 1 48 -101 1 1613 1238 41 0 0 chr5 134799489 134799636 -17737623 + B1_Mus2 SINE Alu 1 147 0 1 1613 386 270 34 0 chr5 134799645 134799734 -17737525 + ID_B1 SINE B4 124 215 -9 1 1613 323 296 82 0 chr5 134799837 134799935 -17737324 + B1F SINE Alu 1 106 -43 1 1613 369 324 122 44 chr5 134799953 134800224 -17737035 + B4A SINE B4 1 292 0 1 1613 446 278 10 0 chr5 134800400 134800497 -17736762 + RSINE1 SINE B4 3 100 -65 1 1613 275 293 61 0 chr5 134800501 134800583 -17736676 - B1_Mus2 SINE Alu -58 89 3 1 1613 1419 58 17 0 chr5 134800639 134800812 -17736447 + B2_Mm2 SINE B2 1 176 -19 1 1613 819 129 7 22 chr5 134800928 134801063 -17736196 + B1_Mur4 SINE Alu 16 148 -2 1 1613 575 254 7 36 chr5 134801087 134801226 -17736033 + RSINE1 SINE B4 3 137 -28 1 1613 198 0 0 0 chr5 134801236 134801258 -17736001 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1613 180 0 0 0 chr5 134801275 134801295 -17735964 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1613 744 178 21 43 chr5 134801301 134801442 -17735817 - B1_Mur4 SINE Alu -11 139 2 1 1613 1178 69 0 0 chr5 134801458 134801602 -17735657 - B1_Mus2 SINE Alu -2 145 2 1 1613 928 174 0 20 chr5 134801623 134801775 -17735484 + B1_Mur1 SINE Alu 1 149 0 1 1613 256 237 50 17 chr5 134801775 134801835 -17735424 + B4A SINE B4 215 276 -16 1 1613 603 173 0 98 chr5 134802190 134802218 -17735041 - B1_Mur1 SINE Alu 0 149 125 1 1613 846 234 92 238 chr5 134802218 134802454 -17734805 - MTD LTR MaLR 0 419 207 1 1613 960 148 0 0 chr5 134802454 134802589 -17734670 - B1_Mus2 SINE Alu -12 135 1 1 1613 846 234 92 238 chr5 134802589 134802632 -17734627 - MTD LTR MaLR -213 206 206 1 1613 1108 133 83 0 chr5 134802632 134802812 -17734447 - B2_Mm2 SINE B2 0 195 1 1 1613 846 234 92 238 chr5 134802812 134803018 -17734241 - MTD LTR MaLR -213 206 4 1 1613 603 173 0 98 chr5 134803018 134803111 -17734148 - B1_Mur1 SINE Alu -25 124 40 1 1613 810 200 0 0 chr5 134803132 134803267 -17733992 - B1_Mus1 SINE Alu 0 148 14 1 1613 1391 41 0 6 chr5 134803267 134803438 -17733821 + B2_Mm1a SINE B2 3 172 -21 1 1613 545 74 0 24 chr5 134803432 134803515 -17733744 - B2_Mm1t SINE B2 -13 180 100 1 1613 1665 31 0 0 chr5 134803593 134803784 -17733475 + B2_Mm1a SINE B2 2 192 -1 1 1613 36 23 0 0 chr5 134803791 134803834 -17733425 + AT_rich Low_complexity Low_complexity 1 43 0 1 1613 697 270 20 31 chr5 134803851 134804046 -17733213 + B3 SINE B2 23 215 -1 1 1613 1069 115 0 0 chr5 134804054 134804193 -17733066 + B1_Mus1 SINE Alu 2 140 -8 1 1613 279 139 89 89 chr5 134804237 134804316 -17732943 + RLTR25B LTR ERVK 431 509 -519 1 1613 788 59 10 0 chr5 134804245 134804346 -17732913 + B1_Mus1 SINE Alu 34 135 -13 1 1613 342 0 0 0 chr5 134804346 134804384 -17732875 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 1 1613 233 222 22 0 chr5 134804388 134804433 -17732826 + ID4 SINE ID 26 71 -12 1 1613 420 20 0 0 chr5 134804436 134804485 -17732774 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1613 207 182 0 0 chr5 134804485 134804529 -17732730 + (CAGA)n Simple_repeat Simple_repeat 4 47 0 1 1613 519 211 123 111 chr5 134804826 134804997 -17732262 + B3 SINE B2 17 189 -6 1 1613 1258 34 0 0 chr5 134805004 134805142 -17732117 + B1_Mus2 SINE Alu 1 138 -9 1 1613 306 0 0 0 chr5 134805142 134805176 -17732083 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 1 1613 21 0 0 0 chr5 134805197 134805218 -17732041 + AT_rich Low_complexity Low_complexity 1 21 0 1 1613 277 238 16 0 chr5 134805273 134805336 -17731923 + RMER16 LTR ERVK 332 395 -138 1 1613 309 265 29 19 chr5 134805334 134805438 -17731821 - MTE2a LTR MaLR -167 212 108 1 1613 392 246 11 109 chr5 134805531 134805623 -17731636 - MTE2a LTR MaLR -280 99 18 1 1613 841 203 86 30 chr5 134805636 134805834 -17731425 - ID_B1 SINE B4 -14 210 2 1 1613 866 156 35 0 chr5 134805930 134806071 -17731188 + B1_Mus2 SINE Alu 2 147 0 1 1613 383 222 51 77 chr5 134806348 134806465 -17730794 + ID_B1 SINE B4 110 223 -1 1 1613 659 255 13 13 chr5 134806476 134806631 -17730628 + RSINE1 SINE B4 11 165 0 1 1613 234 374 126 44 chr5 134806631 134806650 -17730609 + B3A SINE B2 52 198 0 1 1613 218 283 0 19 chr5 134807095 134807149 -17730110 + PB1D7 SINE Alu 52 104 -16 1 1613 1018 110 7 14 chr5 134807153 134807301 -17729958 + B1_Mur4 SINE Alu 3 149 -1 1 1613 252 86 0 0 chr5 134807421 134807456 -17729803 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1 1613 253 331 62 51 chr5 134807469 134807647 -17729612 - B2_Mm2 SINE B2 -3 192 13 1 1613 673 290 0 19 chr5 134807495 134807653 -17729606 - RSINE1 SINE B4 -3 162 8 1 1613 609 250 57 0 chr5 134807659 134807783 -17729476 + ID_B1 SINE B4 83 213 -11 1 1613 1564 52 5 0 chr5 134807783 134807975 -17729284 - B2_Mm1a SINE B2 0 193 1 1 1613 28 29 0 0 chr5 134807985 134808020 -17729239 + AT_rich Low_complexity Low_complexity 1 35 0 1 1613 231 94 0 0 chr5 134808043 134808075 -17729184 - U2 snRNA snRNA -1 187 156 1 1613 213 121 0 0 chr5 134808096 134808129 -17729130 + (GGA)n Simple_repeat Simple_repeat 3 35 0 1 1613 423 157 216 0 chr5 134808131 134808233 -17729026 + B1_Mus2 SINE Alu 2 125 -22 1 1613 875 176 0 0 chr5 134808273 134808415 -17728844 + B1_Mur4 SINE Alu 3 144 -6 1 1613 335 258 50 45 chr5 134808424 134808557 -17728702 + L1M5 LINE L1 3066 3199 -2944 1 1613 304 260 8 4 chr5 134809125 134809393 -17727866 + (TG)n Simple_repeat Simple_repeat 1 268 0 1 1613 440 219 100 15 chr5 134809393 134809523 -17727736 - RSINE1 SINE B4 0 165 25 1 1613 878 257 9 32 chr5 134809533 134809754 -17727505 - B3 SINE B2 0 216 1 1 1613 331 331 58 22 chr5 134809757 134809896 -17727363 - ID_B1 SINE B4 0 224 81 1 1613 1043 156 6 6 chr5 134809893 134809911 -17727348 - B2_Mm1t SINE B2 -19 174 157 1 1613 201 39 0 0 chr5 134809911 134809937 -17727322 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 1 1613 1174 85 0 0 chr5 134809937 134810092 -17727167 - B2_Mm2 SINE B2 -37 156 1 1 1613 722 196 42 7 chr5 134810282 134810426 -17726833 + B1F SINE Alu 1 149 0 1 1613 364 243 0 13 chr5 134810450 134810525 -17726734 + RSINE1 SINE B4 3 76 -89 1 1613 1146 45 0 0 chr5 134810707 134810839 -17726420 + B1_Mus1 SINE Alu 1 132 -16 1 1613 180 0 0 0 chr5 134810839 134810859 -17726400 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1613 387 0 0 0 chr5 134810859 134810901 -17726358 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1613 1116 133 0 0 chr5 134810921 134811101 -17726158 + (GAGAA)n Simple_repeat Simple_repeat 1 180 0 1 1613 243 88 0 0 chr5 134811375 134811409 -17725850 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1613 288 301 92 55 chr5 134811726 134811835 -17725424 - PB1D10 SINE Alu -3 114 2 1 1613 496 276 42 107 chr5 134811737 134811801 -17725458 + B4 SINE B4 28 201 -91 1 1613 912 147 35 0 chr5 134811801 134811944 -17725315 + B1_Mur3 SINE Alu 2 149 0 1 1613 1605 33 0 0 chr5 134811954 134812135 -17725124 + B2_Mm1a SINE B2 1 181 -12 1 1613 603 40 0 0 chr5 134812135 134812209 -17725050 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 1 1613 1028 33 0 0 chr5 134812505 134812627 -17724632 - B1_Mm SINE Alu -1 146 25 1 1613 543 254 11 80 chr5 134812627 134812693 -17724566 - ID_B1 SINE B4 -1 223 49 1 1613 254 289 11 78 chr5 134812759 134812809 -17724450 + B4 SINE B4 1 51 -241 1 1613 3424 90 5 0 chr5 134812809 134813244 -17724015 - RLTR9B LTR ERVK 0 437 1 1 1613 254 289 11 78 chr5 134813244 134813283 -17723976 + B4 SINE B4 52 84 -208 1 1613 189 0 0 0 chr5 134813287 134813308 -17723951 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1613 277 70 0 23 chr5 134813458 134813502 -17723757 - B1_Mur4 SINE Alu -1 149 107 1 1613 1254 34 0 13 chr5 134813520 134813669 -17723590 - B1_Mus1 SINE Alu -1 147 1 1 1613 542 157 128 0 chr5 134813875 134813977 -17723282 - PB1D9 SINE Alu -1 119 5 1 1613 369 0 0 0 chr5 134813978 134814019 -17723240 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1613 455 338 14 14 chr5 134814034 134814178 -17723081 + RSINE1 SINE B4 3 146 -19 1 1613 787 209 14 0 chr5 134814267 134814415 -17722844 + B1_Mur4 SINE Alu 1 150 0 1 1613 311 196 0 0 chr5 134814430 134814486 -17722773 + B3 SINE B2 28 83 -133 1 1613 22 0 0 0 chr5 134814576 134814598 -17722661 + AT_rich Low_complexity Low_complexity 1 22 0 1 1613 674 262 0 7 chr5 134814850 134815000 -17722259 + RSINE1 SINE B4 2 150 -15 1 1613 822 159 14 7 chr5 134815050 134815189 -17722070 - B1_Mur4 SINE Alu -4 146 7 1 1613 31 26 0 0 chr5 134815209 134815247 -17722012 + AT_rich Low_complexity Low_complexity 1 38 0 1 1613 326 284 28 14 chr5 134815255 134815398 -17721861 + GA-rich Low_complexity Low_complexity 1 145 0 1 1613 363 292 26 34 chr5 134815430 134815547 -17721712 + B1F SINE Alu 27 142 -7 1 1613 337 270 82 68 chr5 134815553 134815700 -17721559 + RSINE1 SINE B4 1 149 -16 1 1613 525 110 0 0 chr5 134815702 134815784 -17721475 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1613 748 86 248 0 chr5 134815800 134815917 -17721342 + B1_Mm SINE Alu 1 146 -1 1 1613 373 290 93 0 chr5 134815932 134816039 -17721220 + PB1D10 SINE Alu 1 117 0 1 1613 782 211 0 19 chr5 134816266 134816421 -17720838 + RSINE1 SINE B4 3 154 -11 1 1613 1396 83 5 15 chr5 134816675 134816870 -17720389 + B2_Mm1t SINE B2 1 193 0 1 1613 598 325 0 0 chr5 134816985 134817148 -17720111 - RSINE1 SINE B4 0 165 3 1 1613 528 216 172 0 chr5 134817476 134817592 -17719667 - B3A SINE B2 -62 136 1 1 1613 29 0 0 0 chr5 134817595 134817624 -17719635 + AT_rich Low_complexity Low_complexity 1 29 0 1 1613 852 134 8 0 chr5 134817626 134817760 -17719499 + B1_Mus1 SINE Alu 1 135 -13 1 1613 500 240 160 21 chr5 134817760 134817947 -17719312 + B4 SINE B4 7 219 -73 1 1613 476 202 202 0 chr5 134817955 134818079 -17719180 + B1_Mur4 SINE Alu 1 149 -1 1 1613 761 282 22 71 chr5 134818112 134818337 -17718922 + B3A SINE B2 2 215 -1 1 1613 289 329 88 99 chr5 134818337 134818395 -17718864 + B4 SINE B4 2 281 -11 1 1613 225 191 21 0 chr5 134818420 134818467 -17718792 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1613 1391 79 17 0 chr5 134818906 134819083 -17718176 + B2_Mm2 SINE B2 2 181 -14 1 1613 534 268 12 95 chr5 134819097 134819266 -17717993 - RSINE1 SINE B4 0 165 11 1 1613 443 101 0 43 chr5 134819286 134819373 -17717886 + L1Md_F2 LINE L1 6494 6577 -5 1 1613 1253 41 0 0 chr5 134819373 134819520 -17717739 + B1_Mus2 SINE Alu 1 147 0 1 1613 443 101 0 43 chr5 134819520 134819551 -17717708 + L1Md_F2 LINE L1 6578 6582 0 1 1613 246 62 0 0 chr5 134819595 134819627 -17717632 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1613 1135 89 7 0 chr5 134819641 134819787 -17717472 - B1_Mus1 SINE Alu 0 148 2 1 1613 1003 225 14 32 chr5 134819811 134820031 -17717228 - B3 SINE B2 0 216 1 1 1613 416 266 40 40 chr5 134820052 134820201 -17717058 - B1_Mur1 SINE Alu 0 149 1 1 1613 467 340 25 6 chr5 134820258 134820415 -17716844 - RSINE1 SINE B4 -4 161 2 1 1613 24 0 0 29 chr5 134820426 134820446 -17716813 + AT_rich Low_complexity Low_complexity 1 20 0 1 1613 1282 34 0 0 chr5 134820446 134820593 -17716666 - B1_Mus2 SINE Alu 0 147 1 1 1613 24 0 0 29 chr5 134820593 134820607 -17716652 + AT_rich Low_complexity Low_complexity 1 14 0 1 1613 471 177 0 37 chr5 134820607 134820689 -17716570 - PB1D9 SINE Alu 0 120 42 1 1613 272 80 74 74 chr5 134820796 134820850 -17716409 - PB1D10 SINE Alu 0 117 64 1 1613 525 229 76 0 chr5 134820804 134820922 -17716337 - ID_B1 SINE B4 -4 220 94 1 1613 1240 34 0 7 chr5 134821083 134821230 -17716029 - B1_Mm SINE Alu 0 147 2 1 1613 763 229 80 27 chr5 134821241 134821429 -17715830 - B3A SINE B2 0 198 1 1 1613 414 0 0 0 chr5 134821602 134821648 -17715611 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1613 777 285 52 32 chr5 134821659 134821909 -17715350 - B4A SINE B4 -10 282 28 1 1613 311 109 18 0 chr5 134821943 134821956 -17715303 + (TTCC)n Simple_repeat Simple_repeat 1 13 0 1 1613 3013 29 40 6 chr5 134821956 134822309 -17714950 + RLTR10B2 LTR ERVK 1 365 0 1 1613 311 109 18 0 chr5 134822309 134822350 -17714909 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 1 1613 741 119 62 82 chr5 134822355 134822501 -17714758 - B1_Mur4 SINE Alu -7 143 1 1 1613 266 83 233 0 chr5 134822502 134822562 -17714697 - B2_Mm2 SINE B2 -2 193 120 1 1613 494 235 33 8 chr5 134822555 134822675 -17714584 - RLTR11A2 LTR ERVK -329 198 76 1 1613 2293 122 12 0 chr5 134822679 134822999 -17714260 - ORR1A2 LTR MaLR -3 324 1 1 1613 997 122 73 28 chr5 134823000 134823177 -17714082 + B2_Mm2 SINE B2 7 191 -4 1 1613 336 195 380 8 chr5 134823179 134823308 -17713951 + MTEb LTR MaLR 1 177 -202 1 1613 505 96 0 123 chr5 134823335 134823643 -17713616 + (CAGAGA)n Simple_repeat Simple_repeat 1 269 0 1 1613 610 150 80 0 chr5 134823675 134823775 -17713484 + B1_Mus2 SINE Alu 40 147 0 1 1613 980 194 62 10 chr5 134823760 134823968 -17713291 + MTEb LTR MaLR 161 379 0 1 1613 267 267 17 125 chr5 134823983 134824030 -17713229 + MT2B LTR ERVL 135 241 -360 1 1613 376 192 41 0 chr5 134824030 134824103 -17713156 + B1F SINE Alu 11 86 -63 1 1613 1750 176 165 18 chr5 134824103 134824549 -17712710 + RLTR11A LTR ERVK 1 528 0 1 1613 416 294 80 29 chr5 134824549 134824721 -17712538 - RMER15 LTR ERVL -39 536 356 1 1613 288 0 0 0 chr5 134825035 134825067 -17712192 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1613 486 0 0 0 chr5 134825067 134825120 -17712139 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1613 314 250 27 14 chr5 134826007 134826080 -17711179 + ID_B1 SINE B4 78 151 -73 1 1613 517 187 105 8 chr5 134826081 134826205 -17711054 + B1_Mur4 SINE Alu 5 140 -10 1 1613 274 174 29 14 chr5 134826216 134826286 -17710973 + CT-rich Low_complexity Low_complexity 3 73 0 1 1613 315 0 0 0 chr5 134826287 134826322 -17710937 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1613 549 216 157 40 chr5 134826433 134826631 -17710628 - ID_B1 SINE B4 -2 222 2 1 1613 208 132 0 50 chr5 134827001 134827026 -17710233 + T-rich Low_complexity Low_complexity 15 38 0 1 1613 180 0 0 0 chr5 134827026 134827046 -17710213 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1 1613 208 132 0 50 chr5 134827046 134827060 -17710199 + T-rich Low_complexity Low_complexity 1 14 0 1 1613 213 197 178 27 chr5 134827178 134827251 -17710008 - PB1D9 SINE Alu -1 119 36 1 1613 284 315 79 26 chr5 134827305 134827419 -17709840 - B3A SINE B2 -35 163 44 1 1613 260 174 0 32 chr5 134827476 134827546 -17709713 - B1_Mus2 SINE Alu 0 147 54 1 1613 355 208 91 126 chr5 134827560 134827636 -17709623 - B1F2 SINE Alu 0 149 73 1 1613 1146 66 175 0 chr5 134827636 134827802 -17709457 + B2_Mm2 SINE B2 1 195 0 1 1613 355 208 91 126 chr5 134827802 134827868 -17709391 - B1F2 SINE Alu -77 72 12 1 1613 345 229 19 68 chr5 134827866 134827969 -17709290 - PB1D10 SINE Alu -15 102 5 1 1613 334 277 48 29 chr5 134828044 134828062 -17709197 + B1F SINE Alu 5 110 -39 1 1613 430 233 12 0 chr5 134828062 134828148 -17709111 + ID_B1 SINE B4 102 188 -36 1 1613 1066 73 0 7 chr5 134828148 134828286 -17708973 + B1_Mus1 SINE Alu 3 139 -9 1 1613 232 247 11 115 chr5 134828286 134828346 -17708913 + ID_B1 SINE B4 158 210 -14 1 1613 258 32 0 0 chr5 134828624 134828655 -17708604 + (TCTG)n Simple_repeat Simple_repeat 3 33 0 1 1613 1165 58 0 0 chr5 134828935 134829072 -17708187 - B1_Mus1 SINE Alu -10 138 2 1 1613 223 184 0 0 chr5 134829181 134829219 -17708040 + B2_Mm2 SINE B2 2 39 -156 1 1613 566 122 26 17 chr5 134829505 134829622 -17707637 + CT-rich Low_complexity Low_complexity 3 120 0 1 1613 222 193 11 67 chr5 134829875 134829964 -17707295 + (CACCAT)n Simple_repeat Simple_repeat 6 89 0 1 1613 274 292 0 0 chr5 134830497 134830586 -17706673 + GA-rich Low_complexity Low_complexity 1 89 0 1 1613 1676 42 0 0 chr5 134831211 134831404 -17705855 - B2_Mm1a SINE B2 0 193 1 1 1613 1329 96 11 0 chr5 134831581 134831758 -17705501 + B2_Mm1t SINE B2 1 179 -14 1 1613 276 195 15 33 chr5 134831790 134831904 -17705355 + B3 SINE B2 47 177 -18 1 1613 1069 76 8 0 chr5 134831904 134832036 -17705223 - B1_Mus2 SINE Alu -13 134 2 1 1613 223 304 56 28 chr5 134832036 134832063 -17705196 + B2_Mm2 SINE B2 165 191 -4 1 1613 1123 58 0 0 chr5 134832514 134832651 -17704608 + B1_Mus2 SINE Alu 9 145 -2 1 1613 198 0 0 0 chr5 134832651 134832673 -17704586 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1613 554 154 93 28 chr5 134832684 134832791 -17704468 + PB1D9 SINE Alu 1 114 -6 1 1613 318 260 10 59 chr5 134832863 134832965 -17704294 - RSINE1 SINE B4 -51 114 18 1 1613 618 309 47 26 chr5 134832990 134833183 -17704076 - B4A SINE B4 -95 197 1 1 1613 391 277 98 0 chr5 134833190 134833302 -17703957 - ID_B1 SINE B4 -74 150 28 1 1613 252 114 0 0 chr5 134833889 134833933 -17703326 - MIR SINE MIR -83 125 82 1 1613 1102 235 14 5 chr5 134834147 134834369 -17702890 - ID_B1 SINE B4 0 224 1 1 1613 269 274 137 0 chr5 134834382 134834477 -17702782 - PB1D10 SINE Alu -5 112 5 1 1613 1092 112 0 49 chr5 134835126 134835349 -17701910 - ZP3AR Satellite Satellite -41 211 1 1 1613 603 223 14 21 chr5 134835580 134835722 -17701537 - ID_B1 SINE B4 -1 223 83 1 1613 288 186 0 0 chr5 134835800 134835859 -17701400 + (TA)n Simple_repeat Simple_repeat 1 59 0 1 1613 601 204 106 35 chr5 134835860 134836002 -17701257 - RSINE1 SINE B4 0 165 14 1 1613 613 248 0 0 chr5 134836564 134836693 -17700566 + ID_B1 SINE B4 94 222 -2 1 1613 953 253 211 19 chr5 134837151 134837469 -17699790 + MTEa LTR MaLR 1 379 0 1 1613 372 344 13 0 chr5 134837698 134837855 -17699404 + (CCCA)n Simple_repeat Simple_repeat 2 160 0 1 1613 305 330 17 17 chr5 134838030 134838147 -17699112 - PB1D10 SINE Alu 0 117 1 1 1613 288 353 42 26 chr5 134838540 134838729 -17698530 + ORR1E LTR MaLR 2 193 -166 1 1613 551 259 0 53 chr5 134838771 134838922 -17698337 + ID_B1 SINE B4 80 222 -2 1 1613 939 266 195 22 chr5 134839379 134839702 -17697557 + MTEa LTR MaLR 1 379 0 1 1613 319 325 26 0 chr5 134840215 134840329 -17696930 - PB1D10 SINE Alu 0 117 1 1 1613 396 59 0 0 chr5 134840430 134840481 -17696778 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1 1613 211 192 135 0 chr5 134840488 134840540 -17696719 - B1_Mus2 SINE Alu -88 59 1 1 1613 361 274 19 10 chr5 134840540 134840641 -17696618 - B3A SINE B2 -6 192 91 1 1613 305 179 29 15 chr5 134840836 134840847 -17696412 - B1_Mur4 SINE Alu -36 114 103 1 1613 1108 85 0 0 chr5 134840847 134840988 -17696271 - B1_Mus1 SINE Alu -7 141 1 1 1613 305 179 29 15 chr5 134840988 134841044 -17696215 - B1_Mur4 SINE Alu -48 102 46 1 1613 563 162 331 21 chr5 134841104 134841249 -17696010 - ID_B1 SINE B4 -25 199 10 1 1613 219 88 0 0 chr5 134841457 134841491 -17695768 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1613 220 246 11 11 chr5 134841813 134841884 -17695375 - PB1D10 SINE Alu -49 100 30 1 1613 669 176 52 0 chr5 134841991 134842028 -17695231 - B1_Mur3 SINE Alu 0 149 7 1 1613 403 266 59 152 chr5 134842028 134842127 -17695132 - B4 SINE B4 -94 198 92 1 1613 480 268 65 0 chr5 134842127 134842265 -17694994 - B1_Mur2 SINE Alu -2 147 1 1 1613 403 266 59 152 chr5 134842265 134842369 -17694890 - B4 SINE B4 -201 91 14 1 1613 644 56 0 11 chr5 134842406 134842496 -17694763 + (TTCC)n Simple_repeat Simple_repeat 1 89 0 1 1613 356 298 58 44 chr5 134842502 134842639 -17694620 - ID_B1 SINE B4 -4 220 82 1 1613 2117 179 143 21 chr5 134842766 134843285 -17693974 + RMER4B LTR ERVK 1 582 -3 1 1613 192 40 0 0 chr5 134843475 134843500 -17693759 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1613 392 273 137 33 chr5 134843529 134843711 -17693548 - B4 SINE B4 -49 243 43 1 1613 624 161 195 0 chr5 134843860 134843978 -17693281 - B1_Mus2 SINE Alu -6 141 1 1 1613 361 293 66 82 chr5 134844869 134845051 -17692208 + MT2B2 LTR ERVL 86 264 -320 1 1613 787 103 40 0 chr5 134844948 134845074 -17692185 + B1_Mus1 SINE Alu 6 136 -12 1 1613 225 0 0 0 chr5 134845074 134845099 -17692160 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 1613 185 35 0 65 chr5 134845142 134845173 -17692086 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 1 1613 1011 155 26 36 chr5 134845177 134845371 -17691888 + B2_Mm2 SINE B2 2 193 -2 1 1613 392 281 14 2 chr5 134846176 134846302 -17690957 - B3A SINE B2 -8 208 81 1 1613 407 216 0 0 chr5 134846333 134846407 -17690852 - ID_B1 SINE B4 -8 216 143 1 1613 337 197 0 0 chr5 134846582 134846643 -17690616 - L3 LINE CR1 -97 4392 4332 1 1613 901 157 0 45 chr5 134847059 134847213 -17690046 + B1_Mus1 SINE Alu 1 147 -1 1 1613 186 43 0 0 chr5 134847220 134847243 -17690016 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 1613 854 205 137 10 chr5 134847260 134847457 -17689802 + ID_B1 SINE B4 3 224 0 1 1613 1080 229 128 10 chr5 134847859 134848172 -17689087 + MTD LTR MaLR 60 409 -10 1 1613 282 278 28 0 chr5 134848200 134848272 -17688987 + ID_B1 SINE B4 92 165 -59 1 1613 1181 68 0 0 chr5 134848272 134848418 -17688841 + B1_Mus2 SINE Alu 1 146 -1 1 1613 201 154 0 0 chr5 134848420 134848459 -17688800 + A-rich Low_complexity Low_complexity 4 42 0 1 1613 1100 88 6 24 chr5 134848553 134848717 -17688542 + B2_Mm2 SINE B2 1 161 -34 1 1613 180 77 0 0 chr5 134848717 134848743 -17688516 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1 1613 914 166 60 22 chr5 134848743 134848763 -17688496 + B2_Mm1t SINE B2 172 191 -2 1 1613 765 203 157 6 chr5 134848776 134848954 -17688305 + B3 SINE B2 1 205 -11 1 1613 240 222 125 0 chr5 134849003 134849075 -17688184 + B4 SINE B4 16 96 -196 1 1613 228 67 0 0 chr5 134849142 134849172 -17688087 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1613 702 244 32 0 chr5 134849211 134849367 -17687892 + B3A SINE B2 2 162 -36 1 1613 460 300 107 60 chr5 134849388 134849614 -17687645 + B4 SINE B4 66 278 -14 1 1613 276 30 0 0 chr5 134849615 134849648 -17687611 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1613 248 316 35 121 chr5 134849676 134849694 -17687565 + B4 SINE B4 73 225 -62 1 1613 773 213 0 0 chr5 134849694 134849844 -17687415 + B1_Mur4 SINE Alu 1 150 0 1 1613 181 289 25 38 chr5 134850063 134850142 -17687117 + MIR SINE MIR 54 131 -77 1 1613 470 265 0 0 chr5 134850167 134850269 -17686990 + PB1D10 SINE Alu 9 110 -7 1 1613 401 268 45 0 chr5 134850836 134850948 -17686311 + ID_B1 SINE B4 1 117 -107 1 1613 1607 27 10 0 chr5 134850954 134851212 -17686047 - ZP3AR Satellite Satellite -148 260 1 1 1613 396 181 22 25 chr5 134851217 134851312 -17685947 - B1_Mus2 SINE Alu 0 147 35 1 1613 464 273 28 35 chr5 134851338 134851482 -17685777 - B4 SINE B4 -69 223 81 1 1613 393 286 9 19 chr5 134851501 134851608 -17685651 - B4 SINE B4 -186 106 1 1 1613 862 228 38 28 chr5 134852145 134852357 -17684902 - ID_B1 SINE B4 -7 217 4 1 1613 286 260 0 160 chr5 134852357 134852476 -17684783 - PB1D10 SINE Alu 0 117 18 1 1613 728 167 40 0 chr5 134853419 134853545 -17683714 - B1_Mur1 SINE Alu -5 144 14 1 1613 267 31 0 0 chr5 134853569 134853601 -17683658 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 1 1613 828 225 109 6 chr5 134853601 134853784 -17683475 - B3 SINE B2 -14 202 1 1 1613 933 113 53 0 chr5 134853793 134853943 -17683316 - B2_Mm2 SINE B2 -2 193 36 1 1613 483 191 130 0 chr5 134853978 134854093 -17683166 - ID_B1 SINE B4 -4 220 91 1 1613 1362 110 21 0 chr5 134854093 134854284 -17682975 + B2_Mm2 SINE B2 1 195 0 1 1613 284 248 84 142 chr5 134854284 134854322 -17682937 - B1_Mur4 SINE Alu -116 34 1 1 1613 1014 78 0 19 chr5 134854336 134854493 -17682766 + (TTC)n Simple_repeat Simple_repeat 2 155 0 1 1613 1143 58 7 0 chr5 134854495 134854634 -17682625 - B1_Mm SINE Alu -6 141 2 1 1613 557 243 24 124 chr5 134854638 134854735 -17682524 - ID_B1 SINE B4 -72 152 68 1 1613 1604 31 5 35 chr5 134854735 134854920 -17682339 + B2_Mm1a SINE B2 1 186 -7 1 1613 260 53 26 0 chr5 134854920 134854958 -17682301 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1 1613 1604 31 5 35 chr5 134854958 134854971 -17682288 + B2_Mm1a SINE B2 187 193 0 1 1613 557 243 24 124 chr5 134854971 134855042 -17682217 - ID SINE ID -157 67 1 1 1613 282 167 0 0 chr5 134855070 134855130 -17682129 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1613 568 305 0 38 chr5 134855140 134855297 -17681962 - RSINE1 SINE B4 -10 155 5 1 1613 360 272 67 10 chr5 134855323 134855427 -17681832 - PB1D7 SINE Alu -1 119 10 1 1613 216 246 98 0 chr5 134855445 134855506 -17681753 + MIRm SINE MIR 194 260 -16 1 1613 411 320 59 13 chr5 134855511 134855663 -17681596 + RSINE1 SINE B4 3 161 -4 1 1613 356 256 12 12 chr5 134856302 134856385 -17680874 - ID4_ SINE ID 0 83 1 1 1613 1391 60 20 18 chr5 134856385 134856631 -17680628 - ZP3AR Satellite Satellite -11 246 1 1 1613 1358 143 42 56 chr5 134857269 134857557 -17679702 + RMER6B LTR ERVK 1 284 -177 1 1613 1529 53 21 0 chr5 134857624 134857811 -17679448 - B2_Mm2 SINE B2 -3 192 2 1 1613 618 160 451 0 chr5 134857811 134857955 -17679304 - B3 SINE B2 -7 209 1 1 1613 998 149 17 11 chr5 134857955 134858131 -17679128 + RMER6B LTR ERVK 283 459 -2 1 1613 210 37 0 0 chr5 134859098 134859125 -17678134 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1613 309 295 51 0 chr5 134859127 134859205 -17678054 - RSINE1 SINE B4 -16 149 68 1 1613 405 317 65 33 chr5 134859159 134859205 -17678054 + CYRA11_Mm Unknown Y-chromosome 124 176 -441 1 1613 886 186 48 27 chr5 134859205 134859393 -17677866 - URR1B DNA MER1_type 0 225 34 1 1613 287 341 12 0 chr5 134860343 134860425 -17676834 - ID4_ SINE ID 0 83 1 1 1613 962 188 82 14 chr5 134860425 134860628 -17676631 - ZP3AR Satellite Satellite -11 216 1 1 1613 352 273 35 26 chr5 134861988 134862101 -17675158 + PB1D10 SINE Alu 7 120 0 1 1613 284 275 0 14 chr5 134862142 134862212 -17675047 + ID4 SINE ID 13 81 -2 1 1613 262 292 15 191 chr5 134862212 134862341 -17674918 + ID_B1 SINE B4 13 176 -48 1 1613 418 185 28 9 chr5 134862273 134862369 -17674890 + PB1D10 SINE Alu 26 120 -27 1 1613 721 276 87 56 chr5 134862460 134862824 -17674435 + MTE2a LTR MaLR 38 404 -15 1 1613 258 247 56 11 chr5 134862821 134862911 -17674348 + PB1D7 SINE Alu 19 112 -8 1 1613 322 243 14 0 chr5 134862970 134863040 -17674219 + ID4 SINE ID 3 73 -10 1 1613 519 304 0 0 chr5 134863073 134863208 -17674051 + B3A SINE B2 1 135 -63 1 1613 685 270 50 15 chr5 134863243 134863442 -17673817 - ID_B1 SINE B4 -8 216 11 1 1613 21 36 0 0 chr5 134863454 134863482 -17673777 + AT_rich Low_complexity Low_complexity 1 28 0 1 1613 421 326 7 7 chr5 134863506 134863642 -17673617 - RSINE1 SINE B4 -19 146 11 1 1613 395 240 154 8 chr5 134863652 134863782 -17673477 - B1_Mur2 SINE Alu 0 149 1 1 1613 542 209 91 12 chr5 134863782 134863797 -17673462 - ID_B1 SINE B4 -64 224 70 1 1613 758 185 27 14 chr5 134863961 134864109 -17673150 - B1_Mur4 SINE Alu 0 150 1 1 1613 233 252 176 80 chr5 134864522 134864555 -17672704 + B1F1 SINE Alu 11 147 -2 1 1613 266 286 152 11 chr5 134864555 134864647 -17672612 + ID_B1 SINE B4 118 222 -2 1 1613 1580 70 9 3 chr5 134864600 134864895 -17672364 + ZP3AR Satellite Satellite 1 296 0 1 1613 787 251 19 24 chr5 134865804 134866012 -17671247 + B3 SINE B2 1 207 -9 1 1613 708 199 0 33 chr5 134866019 134866170 -17671089 + B1_Mur2 SINE Alu 1 146 -3 1 1613 404 181 0 0 chr5 134866315 134866387 -17670872 - ZP3AR Satellite Satellite -96 116 45 1 1613 406 276 5 11 chr5 134866837 134866936 -17670323 + B1F SINE Alu 1 103 -17 1 1613 823 141 55 0 chr5 134867273 134867401 -17669858 - B1_Mus1 SINE Alu -13 135 1 1 1613 206 275 110 24 chr5 134867404 134867486 -17669773 - MIRc SINE MIR -116 152 64 1 1613 325 206 10 115 chr5 134867827 134867931 -17669328 + B4A SINE B4 200 292 0 1 1613 189 247 0 0 chr5 134867931 134868012 -17669247 + (CA)n Simple_repeat Simple_repeat 1 81 0 1 1613 320 106 57 57 chr5 134868012 134868082 -17669177 + HAL1-3A_ME LINE L1 1976 2045 -813 1 1613 1358 255 46 16 chr5 134868429 134868796 -17668463 + MTEb LTR MaLR 2 379 0 1 1613 990 201 67 5 chr5 134868984 134869194 -17668065 - ID_B1 SINE B4 0 224 2 1 1613 235 156 0 82 chr5 134869517 134869566 -17667693 + B1F1 SINE Alu 4 48 -101 1 1613 746 223 179 52 chr5 134869599 134869907 -17667352 + MTD LTR MaLR 50 396 -23 1 1613 315 0 0 0 chr5 134869951 134869986 -17667273 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1613 318 115 0 0 chr5 134869986 134870047 -17667212 + (CAGA)n Simple_repeat Simple_repeat 2 62 0 1 1613 284 250 145 0 chr5 134870146 134870222 -17667037 + ID_B1 SINE B4 86 172 -52 1 1613 236 274 98 89 chr5 134870222 134870258 -17667001 + PB1D10 SINE Alu 5 117 0 1 1613 217 264 11 0 chr5 134870262 134870315 -17666944 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 1 1613 740 170 42 14 chr5 134870315 134870458 -17666801 + B1_Mus1 SINE Alu 1 147 -1 1 1613 217 264 11 0 chr5 134870458 134870495 -17666764 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1 1613 401 225 0 24 chr5 134870927 134871009 -17666250 - ID4 SINE ID -3 80 1 1 1613 1536 42 0 0 chr5 134871009 134871422 -17665837 - ZP3AR Satellite Satellite -11 413 1 1 1613 578 205 62 0 chr5 134871774 134871886 -17665373 - B1_Mur1 SINE Alu -8 141 23 1 1613 282 73 0 0 chr5 134871903 134871944 -17665315 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1613 372 172 0 0 chr5 134871944 134872008 -17665251 - B1_Mus2 SINE Alu -18 129 66 1 1613 655 157 107 0 chr5 134872099 134872220 -17665039 - RSINE1 SINE B4 -23 142 9 1 1613 448 257 9 27 chr5 134872237 134872349 -17664910 - PB1D7 SINE Alu -10 110 1 1 1613 286 167 217 0 chr5 134872774 134872834 -17664425 - PB1D10 SINE Alu -44 73 1 1 1613 488 211 9 9 chr5 134872834 134872895 -17664364 - ID SINE ID -143 81 21 1 1613 242 304 97 10 chr5 134872899 134873002 -17664257 - PB1D10 SINE Alu 0 117 6 1 1614 3245 132 110 18 chr5 134873542 134874106 -17663153 + RLTR18 LTR ERVK 1 616 0 1 1614 462 228 26 9 chr5 134874422 134874537 -17662722 + PB1D7 SINE Alu 3 119 -1 1 1614 765 252 65 19 chr5 134874541 134874755 -17662504 + ID_B1 SINE B4 1 224 0 1 1614 279 263 13 0 chr5 134874849 134874925 -17662334 + B1F SINE Alu 73 149 0 1 1614 261 248 97 19 chr5 134874933 134875036 -17662223 + RSINE1 SINE B4 8 118 -47 1 1614 465 335 6 26 chr5 134875134 134875290 -17661969 + RSINE1 SINE B4 13 165 0 1 1614 198 71 0 0 chr5 134875295 134875323 -17661936 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1614 708 289 4 110 chr5 134875334 134875423 -17661836 + B4 SINE B4 14 85 -207 1 1614 940 123 27 0 chr5 134875423 134875569 -17661690 + B1_Mur4 SINE Alu 1 150 0 1 1614 708 289 4 110 chr5 134875569 134875716 -17661543 + B4 SINE B4 86 225 -67 1 1614 4199 121 79 13 chr5 134875732 134876017 -17661242 + RMER6A LTR ERVK 1 324 -432 1 1614 1286 21 0 0 chr5 134876017 134876161 -17661098 + B1_Mus2 SINE Alu 4 147 0 1 1614 4199 121 79 13 chr5 134876161 134876584 -17660675 + RMER6A LTR ERVK 325 756 0 1 1614 1497 185 105 24 chr5 134876628 134876961 -17660298 + MTD LTR MaLR 46 405 -14 1 1614 488 326 48 7 chr5 134876975 134877120 -17660139 + RSINE1 SINE B4 15 165 0 1 1614 245 288 0 0 chr5 134877120 134877186 -17660073 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1614 691 172 89 7 chr5 134877189 134877335 -17659924 - B2_Mm2 SINE B2 -34 161 4 1 1614 596 252 108 31 chr5 134877394 134877626 -17659633 + ID_B1 SINE B4 53 289 -3 1 1614 198 0 0 0 chr5 134877646 134877668 -17659591 + (CA)n Simple_repeat Simple_repeat 2 23 0 1 1614 543 227 0 26 chr5 134878342 134878455 -17658804 - PB1D10 SINE Alu -6 111 2 1 1614 233 351 0 13 chr5 134878465 134878540 -17658719 - ID4 SINE ID -9 74 1 1 1614 431 270 86 14 chr5 134878497 134878636 -17658623 - ZP3AR Satellite Satellite -21 191 43 1 1614 254 290 72 0 chr5 134878658 134878727 -17658532 - PB1D9 SINE Alu -5 115 42 1 1614 645 206 38 0 chr5 134878760 134878891 -17658368 - B1_Mur2 SINE Alu 0 149 14 1 1614 479 348 62 9 chr5 134878895 134879121 -17658138 + MLT1F1 LTR MaLR 29 266 -303 1 1614 182 263 0 0 chr5 134879163 134879201 -17658058 - L3 LINE CR1 -1819 2670 2633 1 1614 472 354 44 6 chr5 134879237 134879396 -17657863 + MTEa LTR MaLR 3 167 -212 1 1614 315 0 0 0 chr5 134879404 134879439 -17657820 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1614 463 238 20 10 chr5 134879875 134879977 -17657282 - RSINE1 SINE B4 -36 129 27 1 1614 316 143 130 87 chr5 134880051 134880143 -17657116 - MIRc SINE MIR -92 184 86 1 1614 538 311 23 0 chr5 134880200 134880332 -17656927 - RSINE1 SINE B4 -28 137 3 1 1614 1767 173 76 32 chr5 134881313 134881683 -17655576 + ORR1B1 LTR MaLR 9 394 0 1 1614 9166 167 19 45 chr5 134881683 134884087 -17653172 + ORR1B1-int LTR MaLR 1 1792 0 1 1614 383 253 0 25 chr5 134884087 134884162 -17653097 - ID_B1 SINE B4 -54 170 98 1 1614 586 171 124 0 chr5 134884443 134884572 -17652687 - B1_Mur1 SINE Alu 0 149 5 1 1614 1278 249 15 111 chr5 134884577 134884984 -17652275 + MTE2a LTR MaLR 12 379 0 1 1614 403 328 6 6 chr5 134885689 134885867 -17651392 + (GGCTG)n Simple_repeat Simple_repeat 3 180 0 1 1614 242 361 18 6 chr5 134886040 134886207 -17651052 + (GGCTG)n Simple_repeat Simple_repeat 4 172 0 1 1614 276 339 23 23 chr5 134886486 134886730 -17650529 + (GGGTG)n Simple_repeat Simple_repeat 1 244 0 1 1614 709 162 60 187 chr5 134887099 134887350 -17649909 + URR1B DNA MER1_type 7 225 0 1 1614 445 299 182 18 chr5 134887358 134887583 -17649676 + MTE2a LTR MaLR 55 316 -63 1 1614 581 179 17 12 chr5 134887637 134887764 -17649495 - PB1D9 SINE Alu -3 147 17 1 1614 256 202 21 116 chr5 134888247 134888271 -17648988 + MT2A LTR ERVL 3 17 -584 1 1614 2011 126 95 20 chr5 134888271 134888619 -17648640 + ORR1C1 LTR MaLR 5 378 0 1 1614 326 239 0 0 chr5 134888619 134888690 -17648569 + MT2A LTR ERVL 18 88 -445 1 1614 516 156 0 0 chr5 134888693 134888783 -17648476 + CT-rich Low_complexity Low_complexity 3 92 0 1 1614 1227 62 89 17 chr5 134888785 134888965 -17648294 - B2_Mm2 SINE B2 0 195 3 1 1614 1365 166 202 86 chr5 134888965 134889365 -17647894 + MT2A LTR ERVL 75 461 -72 1 1614 437 71 14 0 chr5 134889365 134889435 -17647824 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1614 1365 161 161 101 chr5 134889435 134889474 -17647785 + MT2A LTR ERVL 462 487 -46 1 1614 1218 98 6 0 chr5 134889474 134889647 -17647612 - B2_Mm1a SINE B2 -19 174 1 1 1614 1137 75 0 0 chr5 134889649 134889796 -17647463 - B1_Mus1 SINE Alu 0 148 2 1 1614 1365 161 161 101 chr5 134889796 134889850 -17647409 + MT2A LTR ERVL 488 533 0 1 1614 450 280 202 6 chr5 134890301 134890484 -17646775 + ID_B1 SINE B4 1 219 -5 1 1614 508 267 89 0 chr5 134890484 134890619 -17646640 + RSINE1 SINE B4 2 148 -17 1 1614 269 333 13 0 chr5 134890684 134890762 -17646497 + ID2 SINE ID 4 82 -1 1 1614 294 312 18 71 chr5 134891186 134891300 -17645959 + ID_B1 SINE B4 76 187 -105 1 1614 519 200 0 0 chr5 134891437 134891532 -17645727 + B4 SINE B4 2 96 -196 1 1614 445 307 77 17 chr5 134891543 134891778 -17645481 + B4A SINE B4 1 249 -43 1 1614 470 17 0 17 chr5 134891876 134891936 -17645323 + (CA)n Simple_repeat Simple_repeat 2 60 0 1 1614 602 196 27 74 chr5 134891959 134892108 -17645151 + B4 SINE B4 86 227 -65 1 1614 500 246 44 0 chr5 134892109 134892223 -17645036 + 5S rRNA rRNA 2 120 -1 1 1614 649 206 39 8 chr5 134892226 134892353 -17644906 + B1F SINE Alu 13 143 -6 1 1614 204 238 62 31 chr5 134892529 134892576 -17644683 + L2c LINE L2 3321 3371 -16 1 1614 386 216 399 0 chr5 134892576 134892729 -17644530 + B3 SINE B2 3 216 0 1 1614 204 238 62 31 chr5 134892729 134892746 -17644513 + L2c LINE L2 3372 3387 0 1 1614 212 195 0 0 chr5 134892788 134892829 -17644430 + PB1D9 SINE Alu 24 64 -56 1 1614 320 316 140 72 chr5 134893371 134893467 -17643792 + RMER15 LTR ERVL 324 425 -150 1 1614 1224 191 117 86 chr5 134893467 134893827 -17643432 + ORR1D1 LTR MaLR 4 374 0 1 1614 320 316 140 72 chr5 134893827 134893952 -17643307 + RMER15 LTR ERVL 426 560 -15 1 1614 298 294 33 0 chr5 134894133 134894225 -17643034 - PB1D10 SINE Alu -9 108 14 1 1614 474 18 0 0 chr5 134894986 134895041 -17642218 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1614 3834 135 58 6 chr5 134895204 134895888 -17641371 - RMER6D LTR ERVK 0 720 1 1 1614 622 223 92 0 chr5 134895931 134896061 -17641198 + RSINE1 SINE B4 4 145 -20 1 1614 290 335 55 84 chr5 134896061 134896133 -17641126 + B3A SINE B2 3 198 0 1 1614 406 281 42 21 chr5 134896158 134896300 -17640959 + B1F SINE Alu 5 149 0 1 1614 229 305 54 12 chr5 134896309 134896409 -17640850 + ZP3AR Satellite Satellite 1 104 -64 1 1614 585 271 20 107 chr5 134896409 134896653 -17640606 + ID_B1 SINE B4 1 223 -1 1 1614 302 285 68 74 chr5 134896658 134896669 -17640590 + ID_B1 SINE B4 78 139 -85 1 1614 600 226 16 8 chr5 134896669 134896794 -17640465 + B1_Mur1 SINE Alu 3 128 -21 1 1614 302 285 68 74 chr5 134896794 134896806 -17640453 + ID_B1 SINE B4 140 224 0 1 1614 462 269 54 60 chr5 134897406 134897572 -17639687 + RSINE1 SINE B4 1 165 0 1 1614 198 174 0 0 chr5 134897732 134897778 -17639481 + GA-rich Low_complexity Low_complexity 2 47 0 1 1614 368 287 0 11 chr5 134897819 134897914 -17639345 + ID_B1 SINE B4 79 172 -52 1 1614 431 241 8 5 chr5 134897829 134897944 -17639315 + PB1D10 SINE Alu 7 124 -26 1 1614 380 255 72 9 chr5 134897972 134898083 -17639176 + RSINE1 SINE B4 46 163 -2 1 1614 894 88 0 0 chr5 134898153 134898278 -17638981 + (TC)n Simple_repeat Simple_repeat 1 125 0 1 1614 492 207 0 57 chr5 134898393 134898516 -17638743 - B1_Mur4 SINE Alu 0 150 35 1 1614 484 202 46 0 chr5 134898532 134898641 -17638618 - ID_B1 SINE B4 0 224 111 1 1614 334 282 159 26 chr5 134898834 134898947 -17638312 + B3A SINE B2 2 129 -69 1 1614 647 189 0 27 chr5 134898986 134899133 -17638126 + Lx9 LINE L1 7009 7151 -493 1 1614 1189 101 0 0 chr5 134899147 134899316 -17637943 + B2_Mm2 SINE B2 1 169 -26 1 1614 273 217 87 0 chr5 134899376 134899445 -17637814 + PB1D7 SINE Alu 9 83 -37 1 1614 457 254 17 8 chr5 134899464 134899583 -17637676 + ID_B1 SINE B4 7 126 -98 1 1614 368 294 9 38 chr5 134899688 134899794 -17637465 + B4A SINE B4 45 147 -145 1 1614 677 173 16 16 chr5 134900172 134900301 -17636958 + B1_Mur3 SINE Alu 20 148 -1 1 1614 561 205 121 156 chr5 134900338 134900569 -17636690 - ID_B1 SINE B4 0 224 2 1 1614 180 0 0 0 chr5 134900575 134900595 -17636664 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1614 298 67 22 0 chr5 134900595 134900640 -17636619 - B1_Mus2 SINE Alu -13 134 89 1 1614 974 47 0 0 chr5 134900667 134900795 -17636464 - B1_Mus1 SINE Alu 0 148 21 1 1614 551 158 29 10 chr5 134900799 134900901 -17636358 - B1_Mur4 SINE Alu 0 150 47 1 1614 470 226 7 59 chr5 134900980 134901116 -17636143 + B1_Mur1 SINE Alu 21 149 0 1 1614 291 249 9 97 chr5 134901267 134901468 -17635791 + MTEa LTR MaLR 63 250 -120 1 1614 332 191 35 35 chr5 134901540 134901627 -17635632 + MTEa LTR MaLR 293 379 0 1 1614 357 326 8 8 chr5 134901933 134902066 -17635193 + B1F1 SINE Alu 5 137 -12 1 1614 441 0 0 0 chr5 134902085 134902134 -17635125 + (TA)n Simple_repeat Simple_repeat 1 49 0 1 1614 329 287 39 10 chr5 134902142 134902244 -17635015 + PB1D10 SINE Alu 6 110 -7 1 1614 998 233 10 74 chr5 134902331 134902641 -17634618 + B4A SINE B4 1 290 -2 1 1614 573 138 0 0 chr5 134902673 134902767 -17634492 + (TA)n Simple_repeat Simple_repeat 1 94 0 1 1614 201 146 49 0 chr5 134902818 134902859 -17634400 + A-rich Low_complexity Low_complexity 2 44 0 1 1614 331 333 9 0 chr5 134902871 134902982 -17634277 + RSINE1 SINE B4 5 116 -49 1 1614 547 226 160 6 chr5 134903052 134903221 -17634038 + B3A SINE B2 2 196 -2 1 1614 23 0 0 0 chr5 134903221 134903244 -17634015 + AT_rich Low_complexity Low_complexity 1 23 0 1 1614 346 123 0 34 chr5 134904084 134904143 -17633116 - B1_Mus1 SINE Alu -91 57 1 1 1614 654 248 24 18 chr5 134904196 134904360 -17632899 + ID_B1 SINE B4 54 218 -6 1 1614 330 280 0 0 chr5 134904371 134904446 -17632813 + ID4 SINE ID 4 78 -5 1 1614 283 296 35 0 chr5 134904690 134904803 -17632456 + L1M3 LINE L1 5646 5763 -549 1 1614 911 239 0 0 chr5 134904810 134904994 -17632265 + B3 SINE B2 11 194 -22 1 1614 342 324 29 0 chr5 134905020 134905122 -17632137 + B1F SINE Alu 24 128 -21 1 1614 534 16 0 0 chr5 134905152 134905215 -17632044 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1614 481 202 123 0 chr5 134905314 134905428 -17631831 + B1_Mur1 SINE Alu 1 128 -21 1 1614 186 43 0 0 chr5 134905439 134905462 -17631797 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1 1614 445 320 16 54 chr5 134905462 134905647 -17631612 - MTEb LTR MaLR -59 320 143 1 1614 233 287 145 87 chr5 134905647 134905685 -17631574 - B2_Mm2 SINE B2 0 195 14 1 1614 532 239 112 0 chr5 134905685 134905819 -17631440 - RSINE1 SINE B4 -2 163 15 1 1614 836 252 43 13 chr5 134905850 134906073 -17631186 + B4 SINE B4 1 230 -62 1 1614 733 262 37 46 chr5 134906073 134906289 -17630970 + B3 SINE B2 1 214 -2 1 1614 474 320 47 7 chr5 134906313 134906461 -17630798 + B3A SINE B2 1 154 -44 1 1614 858 174 0 0 chr5 134906496 134906645 -17630614 - B1_Mur3 SINE Alu 0 149 1 1 1614 279 111 0 0 chr5 134906666 134906711 -17630548 - 5S rRNA rRNA -29 92 48 1 1614 393 292 0 0 chr5 134906731 134906837 -17630422 - PB1D10 SINE Alu -11 106 1 1 1614 261 279 69 79 chr5 134907192 134907293 -17629966 + PB1D7 SINE Alu 19 118 -2 1 1614 509 264 89 14 chr5 134907297 134907443 -17629816 + RSINE1 SINE B4 3 159 -6 1 1614 363 311 0 32 chr5 134907667 134907793 -17629466 + ID_B1 SINE B4 98 219 -5 1 1614 414 235 28 38 chr5 134907836 134907942 -17629317 + RSINE1 SINE B4 2 106 -59 1 1614 360 0 0 0 chr5 134907970 134908010 -17629249 + (TAAAA)n Simple_repeat Simple_repeat 3 42 0 1 1614 229 216 0 56 chr5 134908239 134908271 -17628988 + polypyrimidine Low_complexity Low_complexity 21 52 0 1 1614 1142 75 0 0 chr5 134908271 134908418 -17628841 - B1_Mus2 SINE Alu 0 147 1 1 1614 229 216 0 56 chr5 134908418 134908439 -17628820 + polypyrimidine Low_complexity Low_complexity 2 20 0 1 1614 246 235 86 29 chr5 134908440 134908510 -17628749 - ID4 SINE ID -9 74 1 1 1614 544 106 12 0 chr5 134908510 134908595 -17628664 - ZP3AR Satellite Satellite -117 95 10 1 1614 258 203 39 39 chr5 134908619 134908696 -17628563 - PB1D7 SINE Alu -2 118 42 1 1614 292 260 113 45 chr5 134908748 134908881 -17628378 - RSINE1 SINE B4 -22 143 2 1 1614 480 208 0 38 chr5 134908893 134908998 -17628261 - PB1D10 SINE Alu -7 110 10 1 1614 267 224 0 0 chr5 134908947 134909005 -17628254 - B4A SINE B4 -147 145 88 1 1614 754 236 119 9 chr5 134909260 134909470 -17627789 + B4 SINE B4 1 233 -59 1 1614 253 160 61 50 chr5 134909461 134909540 -17627719 + RSINE1 SINE B4 9 93 -199 1 1614 236 354 0 0 chr5 134909657 134909736 -17627523 + (CA)n Simple_repeat Simple_repeat 1 79 0 1 1614 303 28 0 0 chr5 134909757 134909793 -17627466 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1614 277 280 83 18 chr5 134910301 134910410 -17626849 - PB1D10 SINE Alu 0 117 2 1 1614 531 255 59 26 chr5 134910454 134910607 -17626652 - ID_B1 SINE B4 -11 213 56 1 1614 373 283 0 19 chr5 134910862 134910970 -17626289 + RSINE1 SINE B4 31 136 -29 1 1614 21 36 0 0 chr5 134910980 134911008 -17626251 + AT_rich Low_complexity Low_complexity 1 28 0 1 1614 1617 0 21 0 chr5 134911008 134911194 -17626065 + B2_Mm1a SINE B2 1 190 -3 1 1614 1141 55 0 7 chr5 134911238 134911386 -17625873 + B1_Mus2 SINE Alu 1 147 0 1 1614 417 70 0 0 chr5 134912196 134912253 -17625006 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1614 549 196 0 0 chr5 134912598 134912700 -17624559 - ID_B1 SINE B4 -31 193 92 1 1614 2150 128 69 23 chr5 134912755 134913146 -17624113 + RLTR9E LTR ERVK 1 409 0 1 1614 246 283 0 16 chr5 134913149 134913210 -17624049 + ID4_ SINE ID 6 65 -18 1 1614 900 236 9 9 chr5 134914700 134914910 -17622349 - ID_B1 SINE B4 -10 214 5 1 1614 2486 103 48 18 chr5 134914978 134915375 -17621884 + RLTR9E LTR ERVK 1 409 0 1 1614 997 121 6 11 chr5 134915456 134915631 -17621628 + ZP3AR Satellite Satellite 23 196 -16 1 1614 212 329 38 0 chr5 134916299 134916378 -17620881 + MIRm SINE MIR 87 168 -108 1 1614 247 353 0 0 chr5 134917035 134917103 -17620156 - PB1D10 SINE Alu -45 72 5 1 1614 250 328 83 90 chr5 134917049 134917193 -17620066 - B4 SINE B4 -149 143 1 1 1614 412 235 10 0 chr5 134917153 134917251 -17620008 - ZP3AR Satellite Satellite -77 135 37 1 1614 801 154 0 15 chr5 134917324 134917456 -17619803 + B3 SINE B2 1 130 -86 1 1614 342 0 0 0 chr5 134917500 134917538 -17619721 + (GA)n Simple_repeat Simple_repeat 1 38 0 1 1614 642 214 8 8 chr5 134918092 134918224 -17619035 - ID_B1 SINE B4 -12 212 81 1 1614 744 196 0 20 chr5 134918241 134918392 -17618867 - B1_Mur2 SINE Alu -1 148 1 1 1614 734 143 0 152 chr5 134918835 134919000 -17618259 + B1_Mur4 SINE Alu 6 145 -5 1 1614 216 0 0 0 chr5 134919231 134919255 -17618004 + (CATG)n Simple_repeat Simple_repeat 2 25 0 1 1614 257 245 0 19 chr5 134919385 134919439 -17617820 + RSINE1 SINE B4 22 74 -91 1 1614 3599 139 77 11 chr5 134919445 134920108 -17617151 - RMER6D LTR ERVK -5 715 9 1 1614 315 0 0 0 chr5 134920144 134920179 -17617080 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1614 360 294 0 0 chr5 134920233 134920342 -17616917 - MIRb SINE MIR -151 117 9 1 1614 235 261 29 0 chr5 134920980 134921049 -17616210 + ID4 SINE ID 5 75 -8 1 1614 232 240 0 0 chr5 134921049 134921099 -17616160 + GA-rich Low_complexity Low_complexity 2 51 0 1 1614 390 299 0 20 chr5 134921142 134921241 -17616018 + PB1D10 SINE Alu 15 111 -6 1 1614 306 312 13 0 chr5 134921276 134921353 -17615906 + RSINE1 SINE B4 78 155 -10 1 1614 197 86 57 0 chr5 134921372 134921407 -17615852 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1 1614 694 218 93 19 chr5 134921409 134921624 -17615635 + ID_B1 SINE B4 15 245 -47 1 1614 447 302 29 0 chr5 134922348 134922487 -17614772 + B1_Mus2 SINE Alu 4 146 -1 1 1614 1506 58 13 0 chr5 134922461 134922749 -17614510 + ZP3AR Satellite Satellite 1 291 0 1 1614 254 241 35 0 chr5 134922752 134922810 -17614449 + ID4_ SINE ID 5 64 -19 1 1614 377 125 0 0 chr5 134922966 134923030 -17614229 + 4.5SRNA scRNA scRNA 1 64 -30 1 1614 607 239 135 21 chr5 134923333 134923525 -17613734 - B3 SINE B2 0 216 3 1 1614 405 222 100 10 chr5 134923542 134923642 -17613617 - PB1D10 SINE Alu 0 117 9 1 1614 243 0 0 0 chr5 134923737 134923764 -17613495 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1614 690 261 6 32 chr5 134923767 134923925 -17613334 - RSINE1 SINE B4 -1 164 11 1 1614 663 120 67 67 chr5 134923965 134924099 -17613160 + B1_Mus1 SINE Alu 2 135 -13 1 1614 601 226 0 0 chr5 134924246 134924352 -17612907 + B3A SINE B2 4 109 -89 1 1614 327 191 155 0 chr5 134924398 134924482 -17612777 + B3A SINE B2 1 97 -101 1 1614 3424 2 0 0 chr5 134924543 134924936 -17612323 + L1Md_T LINE L1 6190 6582 0 1 1614 672 168 0 8 chr5 134924953 134925073 -17612186 + B3 SINE B2 97 215 -1 1 1614 505 125 165 46 chr5 134925197 134925306 -17611953 + B1_Mur1 SINE Alu 27 148 -1 1 1614 437 222 30 10 chr5 134925577 134925677 -17611582 - B1F2 SINE Alu -7 142 41 1 1614 240 273 0 61 chr5 134925605 134925687 -17611572 - MT2B LTR ERVL -337 264 188 1 1614 180 152 0 0 chr5 134925942 134925975 -17611284 + (CG)n Simple_repeat Simple_repeat 2 34 0 1 1614 216 0 0 0 chr5 134925975 134925999 -17611260 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1614 369 142 163 18 chr5 134926066 134926172 -17611087 - B2_Mm2 SINE B2 -8 185 47 1 1614 1253 90 11 0 chr5 134926200 134926377 -17610882 - B2_Mm1t SINE B2 -14 179 1 1 1614 457 319 37 25 chr5 134926415 134926576 -17610683 + RSINE1 SINE B4 3 165 0 1 1614 732 250 25 0 chr5 134926585 134926728 -17610531 + B4 SINE B4 84 230 -62 1 1614 734 253 20 44 chr5 134926728 134926931 -17610328 + B3A SINE B2 1 198 0 1 1614 270 0 0 0 chr5 134927008 134927038 -17610221 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1614 342 0 0 0 chr5 134927038 134927075 -17610184 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1614 3653 141 70 26 chr5 134927100 134927427 -17609832 + RMER6D LTR ERVK 1 359 -361 1 1614 324 0 0 0 chr5 134927427 134927463 -17609796 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1614 3653 141 70 26 chr5 134927463 134927825 -17609434 + RMER6D LTR ERVK 360 720 0 1 1614 297 200 15 0 chr5 134927888 134927953 -17609306 - MER53 DNA hAT -119 74 9 1 1614 1048 128 68 58 chr5 134928513 134928720 -17608539 + URR1B DNA MER1_type 17 225 0 1 1614 348 24 0 0 chr5 134928725 134928766 -17608493 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1614 422 143 40 81 chr5 134928822 134928921 -17608338 - B1_Mur1 SINE Alu -1 148 54 1 1614 416 296 21 14 chr5 134929002 134929146 -17608113 - B4A SINE B4 -127 165 21 1 1614 248 277 39 96 chr5 134929343 134929447 -17607812 + MT2B2 LTR ERVL 158 255 -329 1 1614 548 204 0 10 chr5 134929361 134929465 -17607794 + PB1D10 SINE Alu 15 117 0 1 1614 455 213 42 11 chr5 134929807 134929902 -17607357 + B1F SINE Alu 24 121 -28 1 1614 288 0 0 0 chr5 134929908 134929940 -17607319 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1614 231 36 0 0 chr5 134929965 134929993 -17607266 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 1 1614 255 61 0 0 chr5 134930860 134930893 -17606366 + (CCCCCA)n Simple_repeat Simple_repeat 6 38 0 1 1614 195 42 0 0 chr5 134932331 134932355 -17604904 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 1 1614 24 0 0 0 chr5 134932399 134932423 -17604836 + GC_rich Low_complexity Low_complexity 1 24 0 1 1614 43 56 0 0 chr5 134932528 134932599 -17604660 + GC_rich Low_complexity Low_complexity 1 71 0 1 1614 22 0 0 0 chr5 134932982 134933004 -17604255 + AT_rich Low_complexity Low_complexity 1 22 0 1 1614 227 234 24 47 chr5 134933048 134933133 -17604126 - B1_Mus1 SINE Alu -42 106 24 1 1614 433 235 187 22 chr5 134933075 134933214 -17604045 - ID_B1 SINE B4 -62 162 1 1 1614 554 239 66 22 chr5 134933220 134933357 -17603902 - ID_B1 SINE B4 -2 222 80 1 1614 426 262 56 0 chr5 134933624 134933750 -17603509 + B1F SINE Alu 2 134 -15 1 1614 23 0 0 0 chr5 134933750 134933773 -17603486 + AT_rich Low_complexity Low_complexity 1 23 0 1 1614 339 315 46 0 chr5 134933774 134933882 -17603377 + PB1D7 SINE Alu 1 113 -7 1 1614 476 261 122 44 chr5 134933901 134934105 -17603154 + ID_B1 SINE B4 5 224 0 1 1614 1005 88 0 0 chr5 134934118 134934254 -17603005 + B1_Mus1 SINE Alu 2 137 -11 1 1614 186 43 0 0 chr5 134934254 134934277 -17602982 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1614 209 291 13 13 chr5 134934639 134934727 -17602532 + MIRb SINE MIR 46 128 -134 1 1614 227 250 18 18 chr5 134934867 134934924 -17602335 + PB1D10 SINE Alu 14 70 -47 1 1614 587 227 129 41 chr5 134934928 134935075 -17602184 + RSINE1 SINE B4 6 165 0 1 1614 1177 111 0 57 chr5 134935144 134935336 -17601923 + B2_Mm2 SINE B2 1 181 -14 1 1614 302 84 402 20 chr5 134935384 134935481 -17601778 + B2_Mm2 SINE B2 48 181 -14 1 1614 550 200 0 0 chr5 134935509 134935609 -17601650 + B1_Mur4 SINE Alu 10 109 -41 1 1614 636 161 29 7 chr5 134935609 134935747 -17601512 + Lx5 LINE L1 6902 7042 -8 1 1614 1256 79 6 0 chr5 134935758 134935936 -17601323 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1 1614 383 250 10 42 chr5 134935952 134936048 -17601211 + B4 SINE B4 1 93 -199 1 1614 285 302 0 23 chr5 134936054 134936142 -17601117 + B3A SINE B2 5 90 -108 1 1614 465 272 36 48 chr5 134936246 134936412 -17600847 + B4A SINE B4 86 249 -43 1 1614 565 287 41 41 chr5 134936434 134936531 -17600728 + B4A SINE B4 1 218 -74 1 1614 811 116 0 0 chr5 134936531 134936652 -17600607 + B1_Mur3 SINE Alu 20 140 -9 1 1614 183 42 0 0 chr5 134936890 134936914 -17600345 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1614 621 202 16 39 chr5 134937169 134937298 -17599961 + RSINE1 SINE B4 2 127 -38 1 1614 688 205 0 0 chr5 134937583 134937705 -17599554 - B1_Mur1 SINE Alu -26 123 2 1 1614 254 308 34 110 chr5 134937584 134937730 -17599529 - MT2B LTR ERVL -323 278 144 1 1614 690 158 7 76 chr5 134938216 134938360 -17598899 - B1_Mus2 SINE Alu -1 146 13 1 1614 320 0 25 0 chr5 134938360 134938400 -17598859 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1614 1246 93 16 11 chr5 134939429 134939613 -17597646 + B2_Mm2 SINE B2 2 186 -9 1 1614 1290 71 16 0 chr5 134939615 134939797 -17597462 - B2_Mm1t SINE B2 -8 185 1 1 1614 381 274 0 41 chr5 134939825 134939947 -17597312 + PB1D10 SINE Alu 1 117 0 1 1614 713 288 24 0 chr5 134939951 134940163 -17597096 + ID_B1 SINE B4 1 217 -7 1 1614 518 256 44 15 chr5 134940198 134940333 -17596926 + ZP3AR Satellite Satellite 40 178 -34 1 1614 614 284 105 30 chr5 134940391 134940591 -17596668 + B3 SINE B2 2 216 0 1 1614 1128 93 32 11 chr5 134940663 134940848 -17596411 + B2_Mm2 SINE B2 1 189 -6 1 1614 844 137 0 0 chr5 134940871 134941002 -17596257 + B1_Mus1 SINE Alu 6 136 -12 1 1614 959 131 0 6 chr5 134941002 134941163 -17596096 + (GAAA)n Simple_repeat Simple_repeat 3 162 0 1 1614 453 210 35 42 chr5 134941164 134941284 -17595975 - PB1D9 SINE Alu -29 118 12 1 1614 285 239 10 115 chr5 134941204 134941308 -17595951 - MT2B LTR ERVL -357 244 152 1 1614 278 207 0 49 chr5 134941304 134941365 -17595894 - ID_B1 SINE B4 -73 151 94 1 1614 228 86 0 0 chr5 134941365 134941400 -17595859 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1614 193 274 17 0 chr5 134941421 134941538 -17595721 + (TA)n Simple_repeat Simple_repeat 1 119 0 1 1614 331 259 0 27 chr5 134941559 134941658 -17595601 - B3A SINE B2 -120 96 1 1 1614 563 0 0 15 chr5 134941737 134941805 -17595454 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 1 1614 939 123 7 0 chr5 134941829 134941975 -17595284 - B1_Mus1 SINE Alu 0 148 2 1 1614 394 222 30 2 chr5 134941986 134942091 -17595168 - B1F SINE Alu -21 126 23 1 1614 210 311 67 13 chr5 134942034 134942109 -17595150 - B4A SINE B4 -125 167 89 1 1614 787 224 0 62 chr5 134942906 134943105 -17594154 - B3A SINE B2 -5 193 10 1 1614 472 189 61 26 chr5 134943115 134943229 -17594030 - PB1D7 SINE Alu -1 119 2 1 1614 318 115 0 0 chr5 134943447 134943499 -17593760 + (C)n Simple_repeat Simple_repeat 1 52 0 1 1614 497 273 28 7 chr5 134943513 134943657 -17593602 - B1F SINE Alu -2 147 1 1 1614 23 0 0 0 chr5 134943657 134943680 -17593579 + AT_rich Low_complexity Low_complexity 1 23 0 1 1614 630 219 14 0 chr5 134943680 134943826 -17593433 - B1_Mus1 SINE Alu 0 148 1 1 1614 229 257 14 14 chr5 134943858 134943929 -17593330 - ID4_ SINE ID -12 71 1 1 1614 741 239 8 59 chr5 134944282 134944518 -17592741 + ID_B1 SINE B4 1 224 0 1 1614 589 265 7 0 chr5 134944531 134944667 -17592592 + ID_B1 SINE B4 83 219 -5 1 1614 218 254 16 16 chr5 134944690 134944754 -17592505 + B1F1 SINE Alu 1 64 -85 1 1614 252 257 69 60 chr5 134944809 134944925 -17592334 + MIR SINE MIR 68 184 -78 1 1614 822 98 29 43 chr5 134945213 134945351 -17591908 - B1_Mus2 SINE Alu -11 136 1 1 1614 589 233 72 26 chr5 134945630 134945815 -17591444 + ID_B1 SINE B4 14 216 -76 1 1614 661 231 33 29 chr5 134945828 134946055 -17591204 + B3A SINE B2 2 216 0 1 1614 1171 34 0 20 chr5 134946077 134946227 -17591032 + B1_Mm SINE Alu 1 147 0 1 1614 283 189 0 46 chr5 134946255 134946340 -17590919 + B1F SINE Alu 66 141 -9 1 1614 698 197 39 120 chr5 134947295 134947334 -17589925 + B3A SINE B2 2 28 -170 1 1614 180 0 0 0 chr5 134947334 134947354 -17589905 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1614 1100 63 0 14 chr5 134947356 134947501 -17589758 - B1_Mus1 SINE Alu -4 144 2 1 1614 698 197 39 120 chr5 134947501 134947666 -17589593 + B3A SINE B2 29 192 -6 1 1614 1443 115 7 6 chr5 134948090 134948347 -17588912 - ZP3AR Satellite Satellite -17 257 1 1 1614 266 320 10 10 chr5 134948354 134948455 -17588804 - PB1D10 SINE Alu -6 111 11 1 1614 263 247 53 53 chr5 134948465 134948559 -17588700 - PB1D10 SINE Alu -1 116 23 1 1614 274 389 136 11 chr5 134948556 134948733 -17588526 + MLT1J LTR MaLR 115 313 -199 1 1614 1073 244 142 94 chr5 134948790 134948852 -17588407 - MT2A LTR ERVL -8 525 465 1 1614 513 44 0 0 chr5 134948852 134948920 -17588339 + (CATA)n Simple_repeat Simple_repeat 4 71 0 1 1614 1073 244 142 94 chr5 134948920 134949358 -17587901 - MT2A LTR ERVL -69 464 1 1 1614 384 217 0 0 chr5 134949370 134949462 -17587797 + (TG)n Simple_repeat Simple_repeat 1 92 0 1 1614 318 248 355 27 chr5 134949464 134949530 -17587729 - B4 SINE B4 0 292 227 1 1614 424 248 100 7 chr5 134949530 134949680 -17587579 - RSINE1 SINE B4 0 165 2 1 1614 318 248 355 27 chr5 134949680 134949833 -17587426 - B4 SINE B4 -66 226 1 1 1614 624 238 14 123 chr5 134949860 134950080 -17587179 + B3A SINE B2 1 196 -2 1 1614 572 274 0 33 chr5 134950093 134950244 -17587015 + B1_Mur3 SINE Alu 2 147 -2 1 1614 294 194 53 11 chr5 134950264 134950358 -17586901 + (TA)n Simple_repeat Simple_repeat 2 99 0 1 1614 233 75 0 24 chr5 134950358 134950376 -17586883 + (TAAAAA)n Simple_repeat Simple_repeat 3 20 0 1 1614 1116 88 0 0 chr5 134950376 134950523 -17586736 + B1_Mus2 SINE Alu 1 147 0 1 1614 233 75 0 24 chr5 134950523 134950545 -17586714 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 1 1614 312 320 32 15 chr5 134950595 134950767 -17586492 - L1M5 LINE L1 -1075 5071 4900 1 1614 420 205 55 33 chr5 134950895 134950986 -17586273 + PB1D7 SINE Alu 21 113 -7 1 1614 770 207 7 0 chr5 134950998 134951138 -17586121 + B1_Mur1 SINE Alu 1 141 -8 1 1614 758 254 5 25 chr5 134951151 134951349 -17585910 + B3A SINE B2 5 198 0 1 1614 259 225 39 128 chr5 134951368 134951403 -17585856 + MT2B LTR ERVL 132 222 -377 1 1614 456 92 0 0 chr5 134951403 134951468 -17585791 + PB1D9 SINE Alu 1 65 -55 1 1614 2489 126 22 15 chr5 134951470 134951882 -17585377 - RLTR9F LTR ERVK 0 415 1 1 1614 419 122 27 13 chr5 134951882 134951957 -17585302 - ETnERV2-int LTR ERVK 0 7406 7331 1 1614 9561 151 34 27 chr5 134952169 134955015 -17582244 - ETnERV2-int LTR ERVK -981 6425 1565 1 1614 224 59 29 0 chr5 134955054 134955088 -17582171 + (TTC)n Simple_repeat Simple_repeat 2 36 0 1 1614 1328 81 5 0 chr5 134955116 134955302 -17581957 - B2_Mm1t SINE B2 -6 187 1 1 1614 5864 128 65 30 chr5 134955302 134956559 -17580700 - ETnERV2-int LTR ERVK -5327 2079 14 1 1614 1057 170 22 26 chr5 134956564 134956794 -17580465 - RLTR9D LTR ERVK -1 402 174 1 1614 626 0 14 0 chr5 134956794 134956868 -17580391 + (GA)n Simple_repeat Simple_repeat 2 76 0 1 1614 481 332 49 75 chr5 134956877 134957144 -17580115 - B4A SINE B4 -6 286 27 1 1614 212 341 12 0 chr5 134957160 134957245 -17580014 - B1_Mus1 SINE Alu -39 109 24 1 1614 753 262 90 43 chr5 134957375 134957654 -17579605 - B4A SINE B4 0 292 1 1 1614 463 243 35 26 chr5 134957657 134957771 -17579488 - PB1D10 SINE Alu 0 117 3 1 1614 341 262 44 16 chr5 134957873 134958025 -17579234 + L1MB8 LINE L1 5983 6138 -46 1 1614 216 217 183 0 chr5 134958220 134958280 -17578979 - ID SINE ID -142 82 12 1 1614 618 245 95 7 chr5 134958791 134958985 -17578274 + ID_B1 SINE B4 81 292 0 1 1614 224 181 50 25 chr5 134958988 134959147 -17578112 + (CAGA)n Simple_repeat Simple_repeat 2 164 0 1 1614 210 91 0 0 chr5 134959170 134959203 -17578056 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 1 1614 591 53 0 0 chr5 134959206 134959281 -17577978 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 1 1614 221 362 0 9 chr5 134959462 134959551 -17577708 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1614 297 0 0 0 chr5 134959551 134959584 -17577675 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1614 221 362 0 9 chr5 134959584 134959600 -17577659 + (TG)n Simple_repeat Simple_repeat 1 16 0 1 1614 183 259 13 39 chr5 134959705 134959858 -17577401 + (TATG)n Simple_repeat Simple_repeat 2 150 0 1 1614 230 0 33 0 chr5 134959960 134959990 -17577269 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1 1614 919 59 7 82 chr5 134959991 134960138 -17577121 - B1_Mus1 SINE Alu -12 136 1 1 1614 792 210 175 167 chr5 134960177 134960663 -17576596 - MT2A LTR ERVL -43 490 1 1 1614 324 330 6 38 chr5 134960685 134960868 -17576391 + (TATG)n Simple_repeat Simple_repeat 2 178 0 1 1614 1029 234 194 3 chr5 134961028 134961353 -17575906 - MTD LTR MaLR 0 419 33 1 1614 329 350 13 13 chr5 134962080 134962239 -17575020 + CT-rich Low_complexity Low_complexity 1 159 0 1 1614 1015 116 0 0 chr5 134962469 134962616 -17574643 + B1_Mus2 SINE Alu 1 147 0 1 1614 189 74 0 0 chr5 134962616 134962643 -17574616 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1614 23 33 0 0 chr5 134962699 134962729 -17574530 + AT_rich Low_complexity Low_complexity 1 30 0 1 1614 536 234 113 6 chr5 134962944 134963103 -17574156 + ORR1D1-int LTR MaLR 79 254 -1116 1 1614 373 91 290 113 chr5 134963089 134963107 -17574152 - B2_Mm2 SINE B2 -3 192 180 1 1614 1378 76 5 0 chr5 134963107 134963292 -17573967 - B2_Mm1a SINE B2 -7 186 1 1 1614 373 91 290 113 chr5 134963292 134963397 -17573862 - B2_Mm2 SINE B2 -16 179 47 1 1614 1055 69 126 0 chr5 134963444 134963603 -17573656 - B2_Mm1t SINE B2 -14 179 1 1 1614 628 190 49 93 chr5 134963613 134963679 -17573580 + ORR1D1-int LTR MaLR 250 319 -1051 1 1614 822 184 14 0 chr5 134963679 134963826 -17573433 - B1_Mur3 SINE Alu 0 149 1 1 1614 628 190 49 93 chr5 134963826 134963921 -17573338 + ORR1D1-int LTR MaLR 320 404 -966 1 1614 497 190 346 6 chr5 134964223 134964382 -17572877 + ORR1D1-int LTR MaLR 1158 1370 0 1 1614 1687 169 55 19 chr5 134964382 134964743 -17572516 + ORR1D1 LTR MaLR 1 374 0 1 1614 248 30 0 0 chr5 134964763 134964796 -17572463 + MTD LTR MaLR 349 381 -38 1 1614 863 75 93 43 chr5 134964823 134964963 -17572296 + B1_Mus1 SINE Alu 2 148 0 1 1614 207 167 0 0 chr5 134965318 134965360 -17571899 + G-rich Low_complexity Low_complexity 2 43 0 1 1614 194 263 48 36 chr5 134966660 134966785 -17570474 - L2c LINE L2 -240 3147 3024 1 1614 646 114 19 0 chr5 134967292 134967397 -17569862 + ZP3AR Satellite Satellite 21 127 -85 1 1614 229 229 0 259 chr5 134967314 134967426 -17569833 + ID2 SINE ID 1 83 0 1 1614 803 85 0 8 chr5 134967457 134967575 -17569684 + (GAAA)n Simple_repeat Simple_repeat 4 120 0 1 1614 1092 62 14 0 chr5 134968752 134968896 -17568363 - B1_Mus2 SINE Alu 0 147 2 1 1614 952 238 44 0 chr5 134969200 134969406 -17567853 - ID_B1 SINE B4 -3 221 7 1 1614 786 268 0 0 chr5 134970470 134970649 -17566610 - B3 SINE B2 0 216 38 1 1614 1164 21 0 33 chr5 134970673 134970823 -17566436 - B1_Mus2 SINE Alu 0 147 3 1 1614 731 249 62 5 chr5 134970868 134971078 -17566181 - ID_B1 SINE B4 -2 222 1 1 1614 653 185 8 23 chr5 134971181 134971314 -17565945 + RSINE1 SINE B4 2 132 -33 1 1614 330 291 0 8 chr5 134971405 134971523 -17565736 + PB1D10 SINE Alu 1 117 0 1 1614 846 243 5 26 chr5 134971527 134971721 -17565538 + B3 SINE B2 2 191 -25 1 1614 928 212 29 10 chr5 134971797 134972002 -17565257 + B3 SINE B2 1 209 -7 1 1614 392 237 216 17 chr5 134972302 134972478 -17564781 + ID_B1 SINE B4 5 215 -9 1 1614 514 262 16 0 chr5 134972546 134972668 -17564591 + B1F1 SINE Alu 2 125 -24 1 1614 927 281 5 0 chr5 134972654 134972864 -17564395 + ID_B1 SINE B4 14 224 0 1 1614 1058 282 74 15 chr5 134972876 134973214 -17564045 + MTD LTR MaLR 1 358 -61 1 1614 533 233 61 32 chr5 134973567 134973730 -17563529 - ID_B1 SINE B4 -4 220 64 1 1614 1037 212 25 0 chr5 134974399 134974597 -17562662 - ID_B1 SINE B4 -21 203 1 1 1614 1437 68 0 5 chr5 134974633 134974826 -17562433 + B2_Mm2 SINE B2 2 193 -2 1 1614 515 227 0 0 chr5 134974884 134974981 -17562278 - PB1D10 SINE Alu -6 111 15 1 1614 600 134 188 0 chr5 134975018 134975130 -17562129 - B1_Mus2 SINE Alu -9 138 6 1 1614 547 265 27 13 chr5 134975437 134975586 -17561673 - RSINE1 SINE B4 -4 161 11 1 1614 816 149 8 0 chr5 134975629 134975763 -17561496 - B1_Mus1 SINE Alu 0 148 14 1 1614 293 297 0 0 chr5 134976238 134976312 -17560947 - ID4 SINE ID -9 74 1 1 1614 1582 27 4 0 chr5 134976312 134976632 -17560627 - ZP3AR Satellite Satellite -11 321 1 1 1614 533 266 138 50 chr5 134976787 134977048 -17560211 + B4 SINE B4 2 285 -7 1 1614 645 275 0 0 chr5 134977113 134977251 -17560008 + ID_B1 SINE B4 86 223 -1 1 1614 624 309 36 5 chr5 134977437 134977629 -17559630 + B3A SINE B2 1 198 0 1 1614 429 132 0 0 chr5 134979589 134979657 -17557602 - PB1D7 SINE Alu -52 68 1 1 1614 260 250 0 106 chr5 134979590 134979675 -17557584 - MT2B2 LTR ERVL -360 224 149 1 1614 207 204 0 0 chr5 134980799 134980848 -17556411 + GA-rich Low_complexity Low_complexity 1 49 0 1 1614 553 258 66 0 chr5 134981127 134981278 -17555981 - RSINE1 SINE B4 -3 162 2 1 1614 220 264 101 22 chr5 134981291 134981380 -17555879 - ID_B1 SINE B4 -96 128 33 1 1614 339 220 31 71 chr5 134981335 134981433 -17555826 - B1F SINE Alu 0 149 56 1 1614 617 217 33 61 chr5 134981443 134981637 -17555622 - B1F SINE Alu -2 309 1 1 1614 453 62 0 0 chr5 134982372 134982437 -17554822 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1614 702 127 7 131 chr5 134982464 134982609 -17554650 - B1_Mm SINE Alu -10 137 11 1 1614 1052 89 7 0 chr5 134982703 134982849 -17554410 - B1_Mus2 SINE Alu 0 147 1 1 1614 331 338 21 21 chr5 134982877 134983022 -17554237 - ZP3AR Satellite Satellite -19 193 49 1 1614 608 258 58 34 chr5 134983062 134983267 -17553992 - B3 SINE B2 -6 210 1 1 1614 521 267 95 53 chr5 134983287 134983477 -17553782 - B3A SINE B2 0 198 1 1 1614 299 208 13 13 chr5 134983508 134983586 -17553673 + PB1D10 SINE Alu 4 81 -36 1 1614 229 214 35 140 chr5 134983586 134983622 -17553637 + MT2B2 LTR ERVL 168 269 -315 1 1614 1081 107 0 22 chr5 134984232 134984414 -17552845 + (TCCC)n Simple_repeat Simple_repeat 3 180 0 1 1614 618 250 48 7 chr5 134984418 134984576 -17552683 - ID_B1 SINE B4 -47 245 80 1 1614 437 205 271 0 chr5 134984589 134984740 -17552519 - ID_B1 SINE B4 -32 192 1 1 1614 360 310 101 0 chr5 134984747 134984876 -17552383 - B1F1 SINE Alu -5 144 3 1 1614 215 306 11 53 chr5 134985011 134985105 -17552154 - MIR SINE MIR -124 152 67 1 1614 775 223 82 0 chr5 134985463 134985647 -17551612 - ID_B1 SINE B4 -23 201 3 1 1614 1443 106 3 0 chr5 134986127 134986433 -17550826 + ZP3AR Satellite Satellite 1 307 0 1 1614 327 113 0 0 chr5 134986460 134986522 -17550737 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1614 268 169 15 72 chr5 134986676 134986756 -17550503 + B1_Mur2 SINE Alu 42 147 -2 1 1614 677 105 19 9 chr5 134987119 134987225 -17550034 + PB1D9 SINE Alu 2 108 -12 1 1614 210 37 0 0 chr5 134987226 134987253 -17550006 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1614 215 273 34 0 chr5 134987276 134987364 -17549895 + (TATG)n Simple_repeat Simple_repeat 1 91 0 1 1614 873 277 76 33 chr5 134987403 134987679 -17549580 - B4A SINE B4 0 292 5 1 1614 585 248 15 0 chr5 134987781 134987914 -17549345 - B1_Mur1 SINE Alu -12 137 3 1 1614 386 294 91 25 chr5 134987922 134988121 -17549138 - B4A SINE B4 -73 219 8 1 1614 2149 192 37 9 chr5 134988653 134989085 -17548174 + MT2A LTR ERVL 1 444 -89 1 1614 369 0 0 0 chr5 134989103 134989144 -17548115 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1614 469 309 0 31 chr5 134989278 134989408 -17547851 - B1F SINE Alu -22 127 2 1 1614 821 224 99 0 chr5 134989466 134989658 -17547601 - ID_B1 SINE B4 -13 211 1 1 1614 338 257 59 85 chr5 134989665 134989818 -17547441 - B1F SINE Alu 0 149 1 1 1614 319 296 25 0 chr5 134990197 134990278 -17546981 - ID4 SINE ID 0 83 1 1 1614 1414 90 5 6 chr5 134990278 134990595 -17546664 - ZP3AR Satellite Satellite -11 316 1 1 1614 382 220 16 114 chr5 134990696 134990819 -17546440 + PB1D10 SINE Alu 1 111 -6 1 1614 1130 55 7 0 chr5 134990825 134990971 -17546288 + B1_Mus1 SINE Alu 1 147 -1 1 1614 2030 108 34 37 chr5 134991053 134991328 -17545931 + ORR1A2 LTR MaLR 1 282 -45 1 1614 1362 63 26 0 chr5 134991328 134991517 -17545742 + B2_Mm2 SINE B2 2 195 0 1 1614 2030 108 34 37 chr5 134991517 134991569 -17545690 + ORR1A2 LTR MaLR 283 327 0 1 1614 643 269 263 8 chr5 134991646 134991901 -17545358 + RMER15 LTR ERVL 30 349 -226 1 1614 240 35 0 0 chr5 134992192 134992221 -17545038 + (TTGTG)n Simple_repeat Simple_repeat 2 30 0 1 1614 235 232 89 0 chr5 134993044 134993100 -17544159 + ID_B1 SINE B4 84 144 -80 1 1614 387 244 23 0 chr5 134993357 134993443 -17543816 + ID_B1 SINE B4 134 221 -3 1 1614 231 309 46 63 chr5 134994040 134994181 -17543078 + MIRb SINE MIR 23 159 -103 1 1614 1400 102 8 3 chr5 134994263 134994555 -17542704 + ZP3AR Satellite Satellite 1 293 0 1 1614 306 299 13 0 chr5 134994517 134994594 -17542665 + ID4 SINE ID 6 83 0 1 1614 233 323 10 30 chr5 134994594 134994607 -17542652 + B4 SINE B4 6 93 -199 1 1614 525 253 54 83 chr5 134994607 134994775 -17542484 + RSINE1 SINE B4 3 165 0 1 1614 340 202 10 20 chr5 134994775 134994876 -17542383 + (CATA)n Simple_repeat Simple_repeat 1 100 0 1 1614 198 0 0 0 chr5 134994873 134994895 -17542364 + (TAA)n Simple_repeat Simple_repeat 3 24 0 1 1614 738 254 177 18 chr5 134994900 134995177 -17542082 + Lx8 LINE L1 7151 7471 -2 1 1614 557 213 113 16 chr5 134995198 134995322 -17541937 - B1_Mur1 SINE Alu 0 149 14 1 1614 1054 282 47 47 chr5 134995489 134995894 -17541365 - MTD LTR MaLR -14 405 1 1 1614 888 182 19 0 chr5 134995918 134996077 -17541182 - URR1B DNA MER1_type -8 217 56 1 1614 386 216 0 0 chr5 134996489 134996621 -17540638 + ID_B1 SINE B4 1 176 -48 1 1614 870 249 73 17 chr5 134996721 134996954 -17540305 - B4A SINE B4 -6 286 41 1 1614 358 200 67 39 chr5 134996982 134997086 -17540173 - B1F SINE Alu -3 146 40 1 1614 650 191 85 7 chr5 134997463 134997616 -17539643 - ID_B1 SINE B4 -58 166 2 1 1614 360 222 25 0 chr5 134997661 134997742 -17539517 + B1_Mur1 SINE Alu 66 148 -1 1 1614 235 282 12 25 chr5 134997873 134997953 -17539306 + ORR1C1 LTR MaLR 85 163 -215 1 1614 245 277 12 12 chr5 134998211 134998295 -17538964 - MIRm SINE MIR -128 148 65 1 1614 429 222 157 0 chr5 134999334 134999442 -17537817 + RSINE1 SINE B4 3 127 -38 1 1614 261 0 0 0 chr5 135000064 135000093 -17537166 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1614 711 164 0 16 chr5 135000114 135000238 -17537021 - B1_Mm SINE Alu -3 144 23 2 1614 403 245 11 0 chr5 135000227 135000321 -17536938 + ID_B1 SINE B4 128 222 -2 3 1614 407 256 92 63 chr5 135000350 135000492 -17536767 + B1_Mur1 SINE Alu 1 146 -3 4 1614 309 265 31 181 chr5 135000657 135000669 -17536590 - B2_Mm2 SINE B2 -2 193 184 5 1614 315 71 0 0 chr5 135000669 135000711 -17536548 + (TG)n Simple_repeat Simple_repeat 1 42 0 6 1614 526 247 18 132 chr5 135000711 135000869 -17536390 - B3A SINE B2 -12 183 46 5 1614 1261 34 0 0 chr5 135000869 135001015 -17536244 + B1_Mus2 SINE Alu 2 147 0 7 1614 526 244 16 125 chr5 135001015 135001069 -17536190 - B3A SINE B2 -153 45 2 5 1614 240 35 0 0 chr5 135001170 135001199 -17536060 + (TCC)n Simple_repeat Simple_repeat 3 31 0 8 1614 689 250 42 12 chr5 135001203 135001369 -17535890 - ID_B1 SINE B4 -17 207 37 9 1614 199 71 48 0 chr5 135001388 135001430 -17535829 + (GTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1614 1173 48 7 7 chr5 135001444 135001592 -17535667 - B1_Mus1 SINE Alu 0 148 1 1 1614 331 253 0 22 chr5 135001599 135001688 -17535571 - B4 SINE B4 -204 88 2 1 1614 608 230 26 51 chr5 135002000 135002156 -17535103 + RSINE1 SINE B4 1 152 -13 1 1614 315 71 0 0 chr5 135002156 135002198 -17535061 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1614 973 191 10 45 chr5 135002263 135002461 -17534798 + B3A SINE B2 5 195 -3 1 1614 934 94 0 55 chr5 135002512 135002658 -17534601 - B1_Mus2 SINE Alu -9 138 1 1 1614 643 249 95 42 chr5 135002760 135002949 -17534310 + ID_B1 SINE B4 6 204 -20 1 1614 275 305 158 16 chr5 135002994 135003247 -17534012 + B4A SINE B4 4 292 0 1 1614 311 282 26 0 chr5 135003963 135004041 -17533218 + MER103 DNA DNA 40 119 -47 1 1615 227 284 6 0 chr5 135005194 135005262 -17531997 + B1F SINE Alu 41 110 -10 2 1615 1531 39 17 0 chr5 135005319 135005497 -17531762 + B2_Mm2 SINE B2 1 181 -14 2 1615 444 298 0 0 chr5 135005510 135005614 -17531645 + RSINE1 SINE B4 31 134 -31 2 1615 29 28 0 0 chr5 135005619 135005655 -17531604 + AT_rich Low_complexity Low_complexity 1 36 0 2 1615 1243 41 0 0 chr5 135005660 135005807 -17531452 + B1_Mus1 SINE Alu 2 148 0 2 1615 205 210 0 31 chr5 135005807 135005871 -17531388 + GA-rich Low_complexity Low_complexity 3 64 0 2 1615 340 203 27 0 chr5 135005897 135005971 -17531288 + ZP3AR Satellite Satellite 41 116 -96 2 1615 575 253 30 41 chr5 135006190 135006359 -17530900 + B4A SINE B4 8 174 -118 2 1615 225 259 0 69 chr5 135006395 135006453 -17530806 + B1F1 SINE Alu 95 148 -1 2 1615 351 0 0 0 chr5 135006534 135006573 -17530686 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1615 351 240 13 0 chr5 135007413 135007488 -17529771 + ZP3AR Satellite Satellite 11 86 -126 3 1615 360 111 0 0 chr5 135007489 135007543 -17529716 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1615 329 277 0 12 chr5 135007549 135007633 -17529626 + ID4 SINE ID 1 83 0 3 1615 836 204 47 0 chr5 135007844 135008016 -17529243 - B3 SINE B2 -3 213 34 3 1615 1504 68 16 0 chr5 135008030 135008221 -17529038 + B2_Mm2 SINE B2 2 195 0 3 1615 300 194 48 0 chr5 135008352 135008414 -17528845 - RSINE1 SINE B4 -44 121 57 3 1615 753 281 127 56 chr5 135008771 135008812 -17528447 - B4A SINE B4 -5 287 254 3 1615 1182 256 24 102 chr5 135008812 135009222 -17528037 - MTE2a LTR MaLR -1 378 1 3 1615 753 281 127 56 chr5 135009222 135009448 -17527811 - B4A SINE B4 -39 253 1 3 1615 506 170 64 28 chr5 135010027 135010136 -17527123 + PB1D10 SINE Alu 5 117 0 3 1615 1250 268 56 11 chr5 135010164 135010522 -17526737 + MTE2a LTR MaLR 4 377 -2 3 1615 684 290 11 17 chr5 135010552 135010731 -17526528 + ID_B1 SINE B4 1 178 -46 4 1615 351 280 26 53 chr5 135010728 135010879 -17526380 + RMER15 LTR ERVL 404 550 -25 4 1615 601 286 99 0 chr5 135011226 135011408 -17525851 - ID_B1 SINE B4 0 224 25 4 1615 307 321 73 0 chr5 135011416 135011525 -17525734 - PB1D10 SINE Alu 0 117 1 4 1615 197 0 0 67 chr5 135011744 135011774 -17525485 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 4 1615 503 218 20 0 chr5 135011778 135011879 -17525380 + PB1D7 SINE Alu 10 112 -8 4 1615 378 42 0 0 chr5 135011923 135011971 -17525288 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1615 284 227 0 96 chr5 135012084 135012167 -17525092 - tRNA-Ala-GCY_ tRNA tRNA 0 75 1 4 1615 306 253 25 0 chr5 135012094 135012173 -17525086 - ID2 SINE ID -2 81 1 4 1615 1558 63 8 0 chr5 135012143 135012447 -17524812 - ZP3AR Satellite Satellite -34 394 53 4 1615 232 163 0 0 chr5 135012447 135012490 -17524769 - ID4 SINE ID -40 43 1 5 1615 1558 63 8 0 chr5 135012490 135012535 -17524724 - ZP3AR Satellite Satellite -34 52 1 4 1615 282 207 111 40 chr5 135012548 135012649 -17524610 - PB1D10 SINE Alu -2 125 14 5 1615 365 307 26 0 chr5 135013498 135013612 -17523647 + PB1D10 SINE Alu 1 117 0 5 1615 235 359 33 0 chr5 135013614 135013706 -17523553 + B4 SINE B4 2 96 -196 5 1615 1360 92 32 0 chr5 135013741 135013926 -17523333 + B2_Mm1a SINE B2 2 192 -1 5 1615 1460 128 217 29 chr5 135013937 135014057 -17523202 + ORR1C2 LTR MaLR 13 133 -251 5 1615 4624 179 50 65 chr5 135014057 135014973 -17522286 + RMER19B LTR ERVK 1 902 0 5 1615 1460 128 217 29 chr5 135014973 135015165 -17522094 + ORR1C2 LTR MaLR 134 384 0 5 1615 516 246 8 8 chr5 135015165 135015280 -17521979 + B4 SINE B4 96 210 -82 5 1615 250 338 0 0 chr5 135015312 135015383 -17521876 + (CA)n Simple_repeat Simple_repeat 2 72 0 5 1615 277 281 52 0 chr5 135015392 135015488 -17521771 + GA-rich Low_complexity Low_complexity 2 102 0 5 1615 562 220 91 0 chr5 135015494 135015626 -17521633 + RSINE1 SINE B4 3 146 -19 6 1615 217 229 16 16 chr5 135015947 135016009 -17521250 + G-rich Low_complexity Low_complexity 3 64 0 6 1615 221 235 135 45 chr5 135016252 135016316 -17520943 + B1F2 SINE Alu 4 75 -74 6 1615 400 309 0 0 chr5 135016316 135016413 -17520846 + RSINE1 SINE B4 4 100 -65 6 1615 934 176 43 0 chr5 135016456 135016643 -17520616 + ID_B1 SINE B4 4 198 -26 6 1615 330 298 33 8 chr5 135016538 135016660 -17520599 + B1_Mm SINE Alu 11 135 -12 6 1615 399 182 0 0 chr5 135017210 135017287 -17519972 + (TA)n Simple_repeat Simple_repeat 1 77 0 6 1615 422 209 11 0 chr5 135017362 135017453 -17519806 - RSINE1 SINE B4 -64 101 10 6 1615 352 320 23 39 chr5 135017470 135017600 -17519659 - ID_B1 SINE B4 -47 177 50 6 1615 203 182 18 35 chr5 135018182 135018209 -17519050 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 6 1615 524 194 132 0 chr5 135018209 135018338 -17518921 - B1_Mur4 SINE Alu 0 150 5 7 1615 203 182 18 35 chr5 135018338 135018367 -17518892 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1615 1147 123 196 0 chr5 135018372 135018551 -17518708 - B3 SINE B2 0 216 3 7 1615 222 37 0 0 chr5 135018557 135018584 -17518675 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7 1615 215 305 34 0 chr5 135018618 135018677 -17518582 - RSINE1 SINE B4 -101 64 4 7 1615 432 0 0 0 chr5 135018695 135018743 -17518516 + (CAAAA)n Simple_repeat Simple_repeat 5 52 0 7 1615 221 238 11 91 chr5 135018761 135018849 -17518410 - ID_B1 SINE B4 -70 154 74 7 1615 356 267 14 11 chr5 135018887 135018987 -17518272 - PB1D10 SINE Alu -5 112 13 7 1615 1005 116 0 20 chr5 135019009 135019159 -17518100 - B1_Mus2 SINE Alu 0 147 1 7 1615 519 316 12 31 chr5 135019190 135019353 -17517906 + RSINE1 SINE B4 4 163 -2 7 1615 216 60 19 57 chr5 135019386 135019439 -17517820 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 8 1615 670 152 277 6 chr5 135019453 135019619 -17517640 + B3 SINE B2 4 214 -2 8 1615 21 71 0 0 chr5 135019648 135019690 -17517569 + AT_rich Low_complexity Low_complexity 1 42 0 8 1615 502 246 101 53 chr5 135019692 135019724 -17517535 - B3A SINE B2 0 198 170 8 1615 261 83 0 0 chr5 135019724 135019760 -17517499 + (TATG)n Simple_repeat Simple_repeat 4 39 0 8 1615 502 246 101 53 chr5 135019760 135019916 -17517343 - B3A SINE B2 -29 169 1 8 1615 27 0 0 0 chr5 135019920 135019947 -17517312 + AT_rich Low_complexity Low_complexity 1 27 0 8 1615 455 95 0 13 chr5 135019991 135020066 -17517193 + (CA)n Simple_repeat Simple_repeat 2 75 0 8 1615 267 258 61 0 chr5 135020970 135021036 -17516223 + ID4_ SINE ID 8 77 -6 8 1615 563 311 79 0 chr5 135020977 135021167 -17516092 + ID_B1 SINE B4 20 224 0 8 1615 1000 220 33 28 chr5 135021185 135021400 -17515859 + B3 SINE B2 1 216 0 8 1615 899 161 199 6 chr5 135021405 135021586 -17515673 + B3 SINE B2 1 216 0 9 1615 1452 57 6 0 chr5 135021618 135021795 -17515464 + B2_Mm1a SINE B2 1 178 -15 9 1615 675 94 0 0 chr5 135021795 135021891 -17515368 + (GAAA)n Simple_repeat Simple_repeat 1 96 0 9 1615 593 261 42 42 chr5 135021916 135022084 -17515175 + ZP3AR Satellite Satellite 45 212 0 9 1615 346 188 14 0 chr5 135022952 135023021 -17514238 + RSINE1 SINE B4 9 78 -87 9 1615 366 104 0 0 chr5 135023021 135023042 -17514217 + (A)n Simple_repeat Simple_repeat 1 21 0 9 1615 1216 61 0 0 chr5 135023042 135023190 -17514069 + B1_Mus1 SINE Alu 1 148 0 9 1615 366 104 0 0 chr5 135023190 135023235 -17514024 + (A)n Simple_repeat Simple_repeat 1 45 0 9 1615 195 129 0 0 chr5 135023330 135023361 -17513898 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1615 986 255 39 9 chr5 135023455 135023677 -17513582 + B4A SINE B4 2 230 -62 9 1615 691 268 38 0 chr5 135023677 135023834 -17513425 + RSINE1 SINE B4 3 165 0 1 1615 458 282 96 22 chr5 135023909 135024095 -17513164 + ID_B1 SINE B4 28 224 0 1 1615 494 145 25 25 chr5 135024250 135024370 -17512889 + GA-rich Low_complexity Low_complexity 5 124 0 1 1615 460 194 48 82 chr5 135024580 135024726 -17512533 + B1F SINE Alu 9 149 0 1 1615 286 330 0 17 chr5 135024787 135024904 -17512355 + PB1D10 SINE Alu 1 115 -2 1 1615 586 228 169 29 chr5 135024908 135025080 -17512179 + B3A SINE B2 2 197 -1 1 1615 1240 54 0 0 chr5 135025087 135025234 -17512025 + B1_Mus2 SINE Alu 1 147 0 1 1615 187 29 59 0 chr5 135025234 135025262 -17511997 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 1 1615 759 183 76 0 chr5 135025293 135025424 -17511835 + B1_Mur1 SINE Alu 3 143 -6 1 1615 234 0 0 0 chr5 135025831 135025857 -17511402 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1615 1388 72 79 19 chr5 135025862 135026145 -17511114 + ZP3AR Satellite Satellite 1 300 0 1 1615 325 288 151 48 chr5 135026204 135026350 -17510909 - MIR SINE MIR -82 180 20 1 1615 330 237 0 0 chr5 135028131 135028270 -17508989 + (CCGAG)n Simple_repeat Simple_repeat 3 141 0 1 1615 207 229 42 28 chr5 135028305 135028377 -17508882 + G-rich Low_complexity Low_complexity 3 75 0 1 1615 256 152 0 0 chr5 135028765 135028815 -17508444 + B1_Mur2 SINE Alu 66 144 -5 1 1615 200 118 29 0 chr5 135028851 135028885 -17508374 + MIR SINE MIR 112 146 -62 1 1615 283 242 0 0 chr5 135029183 135029249 -17508010 + ID4 SINE ID 1 66 -17 1 1615 711 194 75 0 chr5 135029268 135029402 -17507857 + B1_Mur1 SINE Alu 1 144 -5 1 1615 213 62 0 0 chr5 135029509 135029541 -17507718 + B3A SINE B2 2 33 -165 1 1615 700 190 88 0 chr5 135029549 135029686 -17507573 + B1_Mur1 SINE Alu 1 149 0 1 1615 1507 57 0 77 chr5 135029690 135029899 -17507360 + B2_Mm1t SINE B2 1 193 0 1 1615 316 280 0 0 chr5 135029930 135030005 -17507254 + ID_B1 SINE B4 128 202 -22 1 1615 406 279 18 0 chr5 135030259 135030370 -17506889 - ZP3AR Satellite Satellite -60 152 40 1 1615 366 294 64 136 chr5 135030372 135030608 -17506651 - ID_B1 SINE B4 -3 221 3 1 1615 207 69 0 0 chr5 135030635 135030664 -17506595 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1615 895 79 8 0 chr5 135030666 135030793 -17506466 - B1_Mus1 SINE Alu -1 147 20 1 1615 812 211 7 7 chr5 135030810 135030958 -17506301 - B1_Mur1 SINE Alu 0 149 2 1 1615 835 211 0 93 chr5 135030968 135031182 -17506077 - B3A SINE B2 -1 197 4 1 1615 688 216 45 0 chr5 135031237 135031371 -17505888 + B1_Mur2 SINE Alu 1 140 -9 1 1615 445 274 46 100 chr5 135031687 135031817 -17505442 - PB1D10 SINE Alu -20 127 5 1 1615 468 249 136 17 chr5 135031922 135032098 -17505161 - B3A SINE B2 0 198 2 1 1615 2776 46 0 11 chr5 135032199 135032570 -17504689 + MTA_Mm LTR MaLR 1 367 -29 1 1615 221 0 0 33 chr5 135032570 135032600 -17504659 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1615 311 98 0 73 chr5 135032609 135032621 -17504638 + MTA_Mm LTR MaLR 350 359 -41 1 1615 1272 54 0 0 chr5 135032621 135032769 -17504490 - B1_Mus1 SINE Alu 0 148 1 1 1615 311 98 0 73 chr5 135032769 135032811 -17504448 + MTA_Mm LTR MaLR 360 400 0 1 1615 315 0 0 0 chr5 135032845 135032880 -17504379 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1 1615 411 276 0 0 chr5 135032886 135032973 -17504286 + PB1D7 SINE Alu 1 87 -33 1 1615 489 34 0 0 chr5 135032980 135033039 -17504220 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 1 1615 483 295 70 6 chr5 135033080 135033383 -17503876 - ORR1D2 LTR MaLR -9 361 16 1 1615 240 241 152 0 chr5 135033428 135033507 -17503752 - Charlie18a DNA MER1_type -190 152 62 1 1615 315 0 0 0 chr5 135033775 135033810 -17503449 + (GGGTG)n Simple_repeat Simple_repeat 2 36 0 1 1615 546 298 0 0 chr5 135034422 135034573 -17502686 - RodERV21-int LTR ERV1 -452 4539 4389 1 1615 2342 128 194 38 chr5 135036506 135036986 -17500273 + RLTR31B_Mm LTR ERVK 2 556 -1 1 1615 4109 30 4 0 chr5 135037231 135037698 -17499561 + L1Md_F3 LINE L1 6116 6584 0 1 1615 963 217 40 15 chr5 135037718 135037919 -17499340 + B3 SINE B2 6 211 -5 1 1615 401 229 0 110 chr5 135037926 135037942 -17499317 + MT2B LTR ERVL 153 155 -446 1 1615 836 55 0 0 chr5 135037942 135038052 -17499207 + B1_Mus2 SINE Alu 1 110 -37 1 1615 916 208 5 40 chr5 135038163 135038363 -17498896 + B3 SINE B2 24 216 0 1 1615 1479 73 21 5 chr5 135038437 135038629 -17498630 + B2_Mm2 SINE B2 1 195 0 1 1615 1301 65 41 52 chr5 135038644 135038838 -17498421 + B2_Mm2 SINE B2 2 193 -2 1 1615 232 196 18 18 chr5 135039987 135040044 -17497215 + G-rich Low_complexity Low_complexity 5 61 0 1 1615 654 244 22 0 chr5 135040108 135040243 -17497016 + B1_Mur2 SINE Alu 5 142 -7 1 1615 927 77 8 0 chr5 135040522 135040652 -17496607 + B2_Mm1a SINE B2 30 160 -33 1 1615 342 0 0 0 chr5 135040652 135040690 -17496569 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1 1615 671 164 0 39 chr5 135040690 135040817 -17496442 + B1_Mur1 SINE Alu 28 149 0 1 1615 481 202 308 52 chr5 135040885 135041057 -17496202 + B3 SINE B2 1 216 0 1 1615 1149 105 0 6 chr5 135041061 135041220 -17496039 + B2_Mm2 SINE B2 1 159 -36 1 1615 191 32 0 61 chr5 135041220 135041253 -17496006 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 1 1615 1149 105 0 6 chr5 135041253 135041265 -17495994 + B2_Mm2 SINE B2 160 171 -24 1 1615 1581 233 25 70 chr5 135041674 135042002 -17495257 + RMER5 LTR ERV1 33 348 -186 1 1615 1057 192 13 53 chr5 135042002 135042227 -17495032 + B3 SINE B2 1 216 0 1 1615 1581 233 25 70 chr5 135042227 135042424 -17494835 + RMER5 LTR ERV1 349 534 0 1 1615 1118 125 203 16 chr5 135042484 135042671 -17494588 - URR1A DNA MER1_type 0 226 5 1 1615 197 320 75 52 chr5 135043292 135043455 -17493804 + MIRc SINE MIR 85 241 -27 1 1615 275 267 0 100 chr5 135043491 135043591 -17493668 + MER44B DNA MER2_type 6 95 -455 1 1615 298 300 67 0 chr5 135043592 135043682 -17493577 + B1F SINE Alu 17 112 -37 1 1615 344 279 75 75 chr5 135043728 135043875 -17493384 + MER44B DNA MER2_type 100 246 -304 1 1615 372 202 71 12 chr5 135043891 135043976 -17493283 + MER44B DNA MER2_type 202 291 -259 1 1615 189 0 0 0 chr5 135044106 135044127 -17493132 + (AGGGGG)n Simple_repeat Simple_repeat 4 24 0 1 1615 805 177 0 8 chr5 135044359 135044490 -17492769 - B3 SINE B2 -86 130 1 1 1615 226 146 0 0 chr5 135044539 135044580 -17492679 - MTEa LTR MaLR -30 349 309 1 1615 431 252 67 0 chr5 135044639 135044758 -17492501 - MTEa LTR MaLR -241 138 12 1 1615 536 213 50 35 chr5 135045307 135045448 -17491811 - B1F SINE Alu 0 149 7 1 1615 906 172 198 11 chr5 135045485 135045667 -17491592 - B3 SINE B2 0 216 1 1 1615 686 267 25 0 chr5 135045817 135045978 -17491281 + B3A SINE B2 3 167 -31 1 1615 297 0 0 0 chr5 135045981 135046014 -17491245 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1615 407 275 37 0 chr5 135046036 135046145 -17491114 + PB1D10 SINE Alu 5 117 0 1 1615 1261 41 0 0 chr5 135046150 135046297 -17490962 + B1_Mus2 SINE Alu 1 147 0 1 1615 261 0 0 0 chr5 135046297 135046326 -17490933 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1615 510 278 0 9 chr5 135046331 135046447 -17490812 + ID_B1 SINE B4 83 197 -27 1 1615 1211 68 0 0 chr5 135046541 135046689 -17490570 + B1_Mus1 SINE Alu 1 148 0 1 1615 207 0 0 0 chr5 135046739 135046762 -17490497 + (GA)n Simple_repeat Simple_repeat 1 23 0 1 1615 425 268 18 18 chr5 135046771 135046885 -17490374 + PB1D7 SINE Alu 7 120 0 1 1615 222 305 113 21 chr5 135046888 135046985 -17490274 + PB1 SINE Alu 2 107 -20 1 1615 1106 244 9 0 chr5 135046995 135047208 -17490051 + B3 SINE B2 1 215 -1 1 1615 564 262 64 35 chr5 135047230 135047432 -17489827 + ID_B1 SINE B4 2 209 -15 1 1615 285 29 0 0 chr5 135047434 135047468 -17489791 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1615 489 311 0 7 chr5 135048288 135048437 -17488822 - ID_B1 SINE B4 0 224 77 1 1615 804 274 19 9 chr5 135049042 135049256 -17488003 - ID_B1 SINE B4 -8 216 1 1 1615 707 284 37 5 chr5 135049408 135049624 -17487635 - ID_B1 SINE B4 -1 223 1 1 1615 560 244 59 0 chr5 135049701 135049836 -17487423 - RSINE1 SINE B4 0 165 23 1 1615 424 207 193 0 chr5 135049849 135049989 -17487270 - B3 SINE B2 -4 212 46 1 1615 499 221 79 32 chr5 135050000 135050126 -17487133 - B4 SINE B4 -62 230 99 1 1615 1179 68 0 0 chr5 135050126 135050273 -17486986 + B1_Mus2 SINE Alu 1 147 0 1 1615 249 108 0 0 chr5 135050273 135050310 -17486949 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1615 1022 112 25 0 chr5 135050360 135050521 -17486738 + URR1A DNA MER1_type 62 226 0 1 1615 339 318 16 23 chr5 135050632 135050761 -17486498 - Lx8 LINE L1 -122 7351 7224 1 1615 731 222 137 23 chr5 135050768 135050943 -17486316 + B3A SINE B2 4 198 0 1 1615 507 176 54 87 chr5 135051040 135051189 -17486070 - B1_Mur1 SINE Alu -1 148 5 1 1615 589 259 54 0 chr5 135051272 135051419 -17485840 + ID_B1 SINE B4 53 207 -17 1 1615 792 216 16 175 chr5 135051461 135051589 -17485670 + B3 SINE B2 1 91 -125 1 1615 1223 62 0 0 chr5 135051589 135051734 -17485525 - B1_Mus1 SINE Alu -2 146 2 1 1615 792 216 16 175 chr5 135051734 135051857 -17485402 + B3 SINE B2 92 212 -4 1 1615 416 291 18 0 chr5 135051866 135051976 -17485283 + B1_Mm SINE Alu 1 112 -35 1 1615 305 162 95 48 chr5 135052016 135052100 -17485159 + RLTR25B LTR ERVK 412 499 -529 1 1615 646 170 0 0 chr5 135052042 135052148 -17485111 + B1_Mus2 SINE Alu 42 147 0 1 1615 1128 109 40 0 chr5 135052168 135052342 -17484917 + B2_Mm2 SINE B2 14 194 -1 1 1615 475 114 34 0 chr5 135052342 135052430 -17484829 + (GAAA)n Simple_repeat Simple_repeat 1 91 0 2 1615 1119 197 38 5 chr5 135052454 135052663 -17484596 + B3 SINE B2 1 216 0 2 1615 293 250 12 12 chr5 135052919 135053000 -17484259 - ZP3AR Satellite Satellite -92 120 40 2 1615 420 284 0 0 chr5 135053051 135053153 -17484106 - RSINE1 SINE B4 -61 104 3 2 1615 450 79 0 0 chr5 135053164 135053227 -17484032 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 2 1615 571 247 63 14 chr5 135053793 135053948 -17483311 + B3A SINE B2 1 149 -49 2 1615 275 113 19 0 chr5 135053948 135054001 -17483258 + (CA)n Simple_repeat Simple_repeat 1 54 0 2 1615 348 292 52 82 chr5 135054001 135054039 -17483220 + B2_Mm2 SINE B2 144 188 -7 2 1615 3592 55 0 7 chr5 135054047 135054490 -17482769 + L1Md_F2 LINE L1 6143 6582 0 2 1615 532 222 131 74 chr5 135054521 135054696 -17482563 + B3A SINE B2 5 189 -9 2 1615 677 93 0 10 chr5 135054704 135054802 -17482457 + B1_Mus1 SINE Alu 1 97 -51 2 1615 333 0 0 0 chr5 135054891 135054928 -17482331 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2 1615 344 85 3 0 chr5 135054985 135055048 -17482211 + B1_Mm SINE Alu 57 147 0 2 1615 426 258 0 0 chr5 135055064 135055153 -17482106 + ID_B1 SINE B4 105 193 -31 2 1615 1085 90 6 0 chr5 135055150 135055316 -17481943 - ZP3AR Satellite Satellite -18 194 28 2 1615 814 36 58 0 chr5 135055564 135055703 -17481556 + (TG)n Simple_repeat Simple_repeat 1 147 0 2 1615 585 268 7 14 chr5 135055704 135055844 -17481415 - RSINE1 SINE B4 -24 141 3 2 1615 802 295 19 5 chr5 135055938 135056149 -17481110 + B3 SINE B2 3 216 0 2 1615 203 118 59 0 chr5 135056149 135056183 -17481076 + GA-rich Low_complexity Low_complexity 1 36 0 2 1615 509 221 35 0 chr5 135056380 135056493 -17480766 + ID_B1 SINE B4 40 156 -68 2 1615 813 163 0 7 chr5 135056495 135056631 -17480628 + B1_Mur2 SINE Alu 11 145 -4 2 1615 644 0 13 0 chr5 135056631 135056707 -17480552 + (GA)n Simple_repeat Simple_repeat 2 78 0 2 1615 550 231 82 7 chr5 135057025 135057160 -17480099 + B1F2 SINE Alu 3 147 -2 2 1615 1278 116 26 10 chr5 135057611 135057803 -17479456 + B2_Mm2 SINE B2 1 195 0 2 1615 501 214 8 100 chr5 135057878 135058008 -17479251 - PB1D9 SINE Alu 0 120 3 2 1615 1265 41 0 0 chr5 135058041 135058188 -17479071 + B1_Mus2 SINE Alu 1 147 0 2 1615 703 145 128 15 chr5 135058217 135058350 -17478909 + B1_Mus1 SINE Alu 1 148 0 2 1615 264 149 0 0 chr5 135058903 135058950 -17478309 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 2 1615 790 214 155 5 chr5 135058950 135059143 -17478116 - ID_B1 SINE B4 -1 223 2 2 1615 445 271 0 0 chr5 135059144 135059240 -17478019 - PB1D7 SINE Alu -18 102 7 2 1615 1196 90 54 0 chr5 135059350 135059516 -17477743 - B2_Mm2 SINE B2 -19 176 2 2 1615 617 174 43 0 chr5 135059572 135059687 -17477572 + PB1D9 SINE Alu 1 120 0 2 1615 267 354 53 0 chr5 135059710 135059823 -17477436 - ID_B1 SINE B4 -5 219 101 2 1615 1022 190 17 56 chr5 135059975 135060209 -17477050 - URR1B DNA MER1_type 0 225 1 2 1615 361 211 26 0 chr5 135060245 135060321 -17476938 + ID4 SINE ID 5 82 -1 2 1615 426 229 31 0 chr5 135060469 135060565 -17476694 + RSINE1 SINE B4 46 144 -21 2 1615 425 250 10 0 chr5 135060599 135060699 -17476560 + B1_Mur1 SINE Alu 43 143 -6 2 1615 219 205 0 0 chr5 135060856 135060895 -17476364 + PB1D10 SINE Alu 38 76 -41 2 1615 815 256 23 19 chr5 135060898 135061113 -17476146 + ID_B1 SINE B4 7 222 -2 2 1615 400 308 189 17 chr5 135061116 135061291 -17475968 - B3 SINE B2 -11 205 1 2 1615 459 237 79 0 chr5 135061658 135061772 -17475487 - RSINE1 SINE B4 -41 124 2 2 1615 180 111 0 0 chr5 135061793 135061820 -17475439 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 2 1615 826 245 35 10 chr5 135061854 135062052 -17475207 - B3 SINE B2 -11 205 3 2 1615 474 246 0 52 chr5 135062059 135062175 -17475084 - ID_B1 SINE B4 0 224 115 2 1615 23 0 0 0 chr5 135062195 135062218 -17475041 + AT_rich Low_complexity Low_complexity 1 23 0 2 1615 787 179 180 28 chr5 135062219 135062397 -17474862 - B3 SINE B2 -10 206 2 2 1615 331 260 77 0 chr5 135062580 135062684 -17474575 - PB1D10 SINE Alu 0 117 6 2 1615 229 158 0 0 chr5 135062925 135062963 -17474296 - MTEb LTR MaLR -237 142 105 2 1615 3217 76 32 30 chr5 135063109 135063571 -17473688 - L1_Mus4 LINE L1 -1 6635 6173 2 1615 5130 106 18 1 chr5 135063571 135064655 -17472604 + L1_Mus4 LINE L1 5052 6154 -482 2 1615 542 250 9 0 chr5 135064664 135064780 -17472479 - PB1D10 SINE Alu 0 117 1 2 1615 793 178 119 42 chr5 135064987 135065180 -17472079 - B3 SINE B2 -6 210 3 2 1615 288 130 0 0 chr5 135065339 135065385 -17471874 + (G)n Simple_repeat Simple_repeat 1 46 0 2 1615 479 277 46 8 chr5 135065536 135065667 -17471592 - RSINE1 SINE B4 -29 136 1 2 1615 25 0 0 0 chr5 135065669 135065694 -17471565 + GC_rich Low_complexity Low_complexity 1 25 0 2 1615 376 210 45 77 chr5 135065704 135065859 -17471400 - RSINE1 SINE B4 0 165 16 2 1615 349 248 161 6 chr5 135065863 135066025 -17471234 - L1MB2 LINE L1 -47 6124 5938 2 1615 217 287 257 7 chr5 135066080 135066099 -17471160 + B4 SINE B4 63 158 -134 2 1615 373 270 54 0 chr5 135066099 135066210 -17471049 + PB1D10 SINE Alu 1 117 0 2 1615 249 122 49 0 chr5 135066214 135066255 -17471004 + B3 SINE B2 2 44 -172 2 1615 957 114 15 0 chr5 135066255 135066387 -17470872 + B1_Mus1 SINE Alu 2 135 -13 2 1615 230 261 200 21 chr5 135066414 135066559 -17470700 + B3A SINE B2 28 198 0 2 1615 273 250 119 48 chr5 135066561 135066687 -17470572 + RSINE1 SINE B4 3 137 -28 2 1615 1330 87 55 0 chr5 135067149 135067332 -17469927 - B2_Mm1a SINE B2 0 193 1 2 1615 243 217 22 0 chr5 135067413 135067459 -17469800 - B3A SINE B2 -80 118 72 2 1615 210 37 0 0 chr5 135067469 135067496 -17469763 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1615 246 297 169 105 chr5 135067508 135067552 -17469707 - RSINE1 SINE B4 -31 134 92 2 1615 1061 73 73 0 chr5 135067552 135067689 -17469570 + B1_Mus2 SINE Alu 1 147 0 2 1615 246 297 169 105 chr5 135067689 135067768 -17469491 - RSINE1 SINE B4 -74 91 3 2 1615 436 284 22 7 chr5 135067845 135067980 -17469279 - B1F SINE Alu -1 148 12 2 1615 287 244 106 43 chr5 135068391 135068485 -17468774 - RSINE1 SINE B4 -61 104 5 2 1615 582 195 0 82 chr5 135068550 135068684 -17468575 - ID_B1 SINE B4 -7 217 95 2 1615 180 135 0 0 chr5 135068803 135068840 -17468419 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1615 1845 130 16 16 chr5 135069239 135069560 -17467699 - MTB_Mm LTR MaLR 0 407 87 2 1615 207 0 0 0 chr5 135069564 135069587 -17467672 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1615 210 57 0 79 chr5 135069616 135069654 -17467605 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2 1615 1232 41 0 13 chr5 135069657 135069806 -17467453 - B1_Mus1 SINE Alu -1 147 1 2 1615 520 135 11 22 chr5 135069806 135069897 -17467362 - MTB_Mm LTR MaLR -323 98 9 2 1615 229 118 0 0 chr5 135070213 135070247 -17467012 + PB1D7 SINE Alu 3 36 -84 2 1615 287 215 76 0 chr5 135070313 135070392 -17466867 + ID_B1 SINE B4 54 138 -86 2 1615 250 214 0 0 chr5 135070345 135070401 -17466858 + PB1D10 SINE Alu 11 66 -51 2 1615 382 222 168 23 chr5 135070698 135070847 -17466412 - ID_B1 SINE B4 -59 233 82 2 1615 290 257 14 0 chr5 135070853 135070923 -17466336 - PB1D10 SINE Alu -7 110 40 2 1615 1025 208 43 10 chr5 135071507 135071716 -17465543 - B3 SINE B2 0 216 1 2 1615 234 162 69 56 chr5 135071774 135071846 -17465413 - ORR1E LTR MaLR -248 111 39 2 1615 301 241 38 0 chr5 135073263 135073342 -17463917 + ID SINE ID 2 83 -141 2 1615 371 267 22 0 chr5 135073421 135073511 -17463748 + ID_B1 SINE B4 113 204 -20 2 1615 294 193 193 0 chr5 135073908 135073996 -17463263 - PB1D10 SINE Alu 0 117 13 2 1615 462 246 145 0 chr5 135073933 135074071 -17463188 - ID_B1 SINE B4 -55 169 12 2 1615 442 218 35 163 chr5 135074317 135074526 -17462733 + B4 SINE B4 43 223 -69 2 1615 939 53 8 8 chr5 135074394 135074528 -17462731 + B1_Mus1 SINE Alu 15 148 0 2 1615 23 54 0 0 chr5 135074560 135074597 -17462662 + AT_rich Low_complexity Low_complexity 1 37 0 2 1615 793 238 114 0 chr5 135074667 135074860 -17462399 - B3 SINE B2 0 216 2 2 1615 1017 116 14 7 chr5 135075127 135075274 -17461985 + B1_Mus1 SINE Alu 1 148 0 2 1615 416 221 31 31 chr5 135075323 135075421 -17461838 + B1F1 SINE Alu 1 98 -51 2 1615 228 229 194 28 chr5 135075435 135075543 -17461716 + RSINE1 SINE B4 2 127 -38 2 1615 592 248 66 24 chr5 135075543 135075735 -17461524 + B4A SINE B4 20 220 -72 2 1615 354 297 104 55 chr5 135075735 135075899 -17461360 + B3A SINE B2 3 174 -24 2 1615 503 256 74 15 chr5 135075914 135076049 -17461210 + B1_Mur2 SINE Alu 2 144 -5 2 1615 233 221 191 8 chr5 135076458 135076552 -17460707 + B1F SINE Alu 17 117 0 2 1615 547 281 118 20 chr5 135076855 135076929 -17460330 + ID_B1 SINE B4 2 224 0 2 1615 659 194 31 0 chr5 135076929 135077058 -17460201 + B1F2 SINE Alu 17 149 0 2 1615 273 231 0 0 chr5 135077066 135077131 -17460128 + ID_B1 SINE B4 83 147 -77 2 1615 1472 59 37 0 chr5 135077184 135077371 -17459888 + B2_Mm2 SINE B2 1 194 -1 2 1615 577 196 46 9 chr5 135077539 135077647 -17459612 - PB1D9 SINE Alu -8 112 1 2 1615 681 13 0 0 chr5 135077731 135077809 -17459450 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 1615 421 281 31 143 chr5 135077811 135077897 -17459362 - ID_B1 SINE B4 0 292 177 3 1615 338 279 0 11 chr5 135077897 135077984 -17459275 - PB1D10 SINE Alu -9 108 23 3 1615 421 281 31 143 chr5 135077984 135078082 -17459177 - ID_B1 SINE B4 0 176 42 3 1615 222 368 40 0 chr5 135078043 135078119 -17459140 - ID4_ SINE ID -4 79 1 3 1615 709 189 17 68 chr5 135079495 135079671 -17457588 - B2_Mm2 SINE B2 -14 181 15 3 1615 683 100 0 52 chr5 135079795 135079911 -17457348 - B1_Mur4 SINE Alu 0 150 41 3 1615 260 318 24 0 chr5 135079954 135080039 -17457220 + RSINE1 SINE B4 67 153 -12 3 1615 1208 74 0 0 chr5 135080079 135080227 -17457032 + B1_Mus1 SINE Alu 1 148 0 3 1615 189 0 0 0 chr5 135080260 135080281 -17456978 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1615 225 0 0 0 chr5 135080499 135080524 -17456735 + (CACG)n Simple_repeat Simple_repeat 4 28 0 3 1615 342 0 0 0 chr5 135080985 135081023 -17456236 + (TC)n Simple_repeat Simple_repeat 2 39 0 3 1615 192 77 0 0 chr5 135081025 135081051 -17456208 + (TATG)n Simple_repeat Simple_repeat 2 27 0 3 1615 361 312 41 55 chr5 135081134 135081280 -17455979 - RSINE1 SINE B4 0 165 22 3 1615 691 228 96 20 chr5 135081296 135081493 -17455766 - ID_B1 SINE B4 -12 212 1 3 1615 353 241 86 0 chr5 135081493 135081596 -17455663 - PB1D10 SINE Alu -6 114 8 3 1615 295 0 43 43 chr5 135081960 135082007 -17455252 + (CTAGG)n Simple_repeat Simple_repeat 3 49 0 3 1615 289 267 86 32 chr5 135082805 135082822 -17454437 + PB1D9 SINE Alu 1 17 -103 3 1615 306 0 0 0 chr5 135082822 135082856 -17454403 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 3 1615 492 228 17 6 chr5 135082856 135082982 -17454277 + B1F1 SINE Alu 18 149 0 3 1615 298 192 27 14 chr5 135083225 135083299 -17453960 - ZP3AR Satellite Satellite -100 112 38 3 1615 1065 237 0 19 chr5 135083308 135083519 -17453740 - B3 SINE B2 -6 210 4 3 1615 261 279 74 22 chr5 135083570 135083700 -17453559 - RSINE1 SINE B4 -4 161 18 3 1615 305 203 29 0 chr5 135083702 135083771 -17453488 - B1F SINE Alu -9 140 70 3 1615 243 200 318 1 chr5 135084217 135084323 -17452936 + B1F1 SINE Alu 1 126 -21 3 1615 223 325 0 12 chr5 135084326 135084407 -17452852 + GA-rich Low_complexity Low_complexity 3 82 0 3 1615 1289 20 0 0 chr5 135085032 135085179 -17452080 + B1_Mm SINE Alu 1 147 0 3 1615 213 39 0 0 chr5 135085179 135085205 -17452054 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1615 218 139 0 0 chr5 135085390 135085426 -17451833 + PB1D7 SINE Alu 74 109 -11 3 1615 246 32 0 0 chr5 135085426 135085457 -17451802 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1615 319 244 122 0 chr5 135085501 135085591 -17451668 + B3 SINE B2 1 101 -115 3 1615 209 171 0 0 chr5 135085734 135085769 -17451490 + C-rich Low_complexity Low_complexity 1 35 0 3 1615 658 165 17 0 chr5 135085769 135085884 -17451375 + B1_Mus1 SINE Alu 31 147 -1 3 1615 849 68 92 8 chr5 135086346 135086465 -17450794 + B1_Mm SINE Alu 1 129 -18 3 1615 1508 47 9 0 chr5 135086524 135086844 -17450415 + ZP3AR Satellite Satellite 1 323 0 3 1615 1267 81 147 5 chr5 135086916 135087114 -17450145 + URR1A DNA MER1_type 1 226 0 3 1615 309 109 0 0 chr5 135087185 135087240 -17450019 + (TATG)n Simple_repeat Simple_repeat 2 56 0 3 1615 240 226 75 0 chr5 135087363 135087416 -17449843 + ID_B1 SINE B4 97 153 -71 3 1615 269 250 100 22 chr5 135087987 135088077 -17449182 + PB1D10 SINE Alu 12 108 -9 3 1615 581 229 79 79 chr5 135088060 135088250 -17449009 + ZP3AR Satellite Satellite 15 204 -8 3 1615 1099 204 10 15 chr5 135088328 135088532 -17448727 + B3 SINE B2 1 203 -13 3 1615 635 266 0 0 chr5 135088534 135088677 -17448582 - B1_Mur1 SINE Alu -2 147 5 3 1615 27 0 0 0 chr5 135088685 135088712 -17448547 + AT_rich Low_complexity Low_complexity 1 27 0 3 1615 1100 95 0 39 chr5 135088715 135088869 -17448390 + B1_Mus1 SINE Alu 1 148 0 3 1615 324 188 0 0 chr5 135088909 135088973 -17448286 + GA-rich Low_complexity Low_complexity 2 65 0 3 1615 260 173 19 0 chr5 135088997 135089049 -17448210 + RMER15 LTR ERVL 417 469 -106 3 1615 508 262 86 13 chr5 135089242 135089393 -17447866 + RSINE1 SINE B4 2 163 -2 3 1615 286 313 0 0 chr5 135090030 135090113 -17447146 - PB1D10 SINE Alu -1 116 34 3 1615 680 141 116 8 chr5 135090984 135091113 -17446146 + B1_Mur2 SINE Alu 1 143 -6 3 1615 525 119 24 0 chr5 135091916 135092000 -17445259 - B1_Mus2 SINE Alu 0 147 62 3 1615 1042 59 66 0 chr5 135092043 135092179 -17445080 + B1_Mm SINE Alu 1 145 -2 3 1615 1002 22 0 36 chr5 135092247 135092385 -17444874 - B1_Mus1 SINE Alu 0 148 16 3 1615 1468 47 10 64 chr5 135092386 135092589 -17444670 + B2_Mm1a SINE B2 2 193 0 3 1615 342 138 148 12 chr5 135092651 135092732 -17444527 - PB1D9 SINE Alu 0 120 29 3 1615 393 286 80 60 chr5 135092761 135092962 -17444297 - B4A SINE B4 -87 205 1 3 1615 363 269 0 28 chr5 135093545 135093652 -17443607 - PB1D10 SINE Alu -1 116 13 3 1615 444 264 107 30 chr5 135093652 135093820 -17443439 - B3 SINE B2 -23 193 13 3 1615 481 181 43 0 chr5 135093822 135093916 -17443343 - PB1D9 SINE Alu -1 119 22 3 1615 299 281 140 67 chr5 135094309 135094473 -17442786 + B3 SINE B2 26 201 -15 3 1615 331 247 144 0 chr5 135094483 135094580 -17442679 + B3 SINE B2 2 112 -104 3 1615 448 133 27 0 chr5 135094747 135094822 -17442437 + PB1D9 SINE Alu 34 110 -10 3 1615 323 229 50 30 chr5 135095092 135095191 -17442068 - PB1D9 SINE Alu -7 113 13 3 1615 608 239 8 0 chr5 135095261 135095378 -17441881 - B3 SINE B2 -90 126 9 3 1615 492 266 86 0 chr5 135095401 135095529 -17441730 - B4A SINE B4 -99 193 55 3 1615 474 217 88 52 chr5 135097556 135097692 -17439567 - B1F SINE Alu -1 148 8 3 1615 524 219 0 58 chr5 135097564 135097685 -17439574 - ID_B1 SINE B4 -9 215 102 3 1615 230 267 11 157 chr5 135097685 135097742 -17439517 + YREP_Mm Unknown Unknown 186 337 -1475 3 1615 222 243 70 14 chr5 135098337 135098408 -17438851 + PB1D9 SINE Alu 46 120 0 3 1615 308 218 83 71 chr5 135098431 135098515 -17438744 + B3A SINE B2 34 118 -80 3 1615 292 223 208 28 chr5 135098542 135098648 -17438611 + B4 SINE B4 94 218 -74 3 1615 363 265 0 0 chr5 135098657 135098740 -17438519 + RSINE1 SINE B4 11 93 -72 3 1615 582 15 0 0 chr5 135098763 135098830 -17438429 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1615 1228 61 0 0 chr5 135099365 135099512 -17437747 + B1_Mus2 SINE Alu 1 147 0 3 1615 647 277 124 41 chr5 135100408 135100675 -17436584 + MTD LTR MaLR 1 289 -130 3 1615 1669 144 185 8 chr5 135100763 135101114 -17436145 + MTC LTR MaLR 1 413 -8 3 1615 935 261 10 5 chr5 135101612 135101816 -17435443 - ID_B1 SINE B4 -16 208 4 3 1615 567 226 172 57 chr5 135102912 135103104 -17434155 + B3 SINE B2 2 215 -1 3 1615 341 162 43 14 chr5 135103928 135103997 -17433262 + PB1D10 SINE Alu 35 105 -12 3 1615 618 234 35 12 chr5 135104008 135104207 -17433052 + B4A SINE B4 1 282 -10 3 1615 253 242 253 0 chr5 135104223 135104314 -17432945 + B1F1 SINE Alu 1 114 -35 3 1615 282 216 162 0 chr5 135104241 135104315 -17432944 + ID_B1 SINE B4 109 194 -30 3 1615 189 0 0 0 chr5 135104332 135104353 -17432906 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 3 1615 482 204 87 0 chr5 135104446 135104549 -17432710 - B1_Mur2 SINE Alu -1 148 37 3 1615 576 286 78 5 chr5 135104577 135104770 -17432489 - B3 SINE B2 -5 211 5 3 1615 756 196 20 27 chr5 135104826 135104973 -17432286 + B1_Mus2 SINE Alu 2 147 0 3 1615 225 0 0 0 chr5 135104984 135105009 -17432250 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 1615 1506 22 60 11 chr5 135105827 135106011 -17431248 + B2_Mm1a SINE B2 1 193 0 3 1615 327 141 192 0 chr5 135106056 135106134 -17431125 + B1_Mus2 SINE Alu 54 146 -1 3 1615 1403 86 32 0 chr5 135107179 135107366 -17429893 + B2_Mm2 SINE B2 2 194 -1 3 1615 223 259 52 0 chr5 135107413 135107471 -17429788 + ID2 SINE ID 17 77 -6 3 1615 273 119 0 0 chr5 135107657 135107699 -17429560 + (A)n Simple_repeat Simple_repeat 1 42 0 3 1615 291 294 215 48 chr5 135107714 135107900 -17429359 + ID_B1 SINE B4 6 222 -2 3 1615 220 303 0 15 chr5 135107895 135107962 -17429297 + B4 SINE B4 80 145 -147 3 1615 307 240 17 130 chr5 135107910 135108025 -17429234 + PB1D9 SINE Alu 9 110 -10 3 1615 1209 68 0 0 chr5 135108082 135108229 -17429030 + B1_Mm SINE Alu 1 147 0 3 1615 213 229 97 16 chr5 135108304 135108366 -17428893 + PB1D9 SINE Alu 47 113 -7 3 1615 219 224 0 0 chr5 135108395 135108444 -17428815 + B1_Mur1 SINE Alu 99 147 -2 3 1615 1175 81 0 0 chr5 135108495 135108643 -17428616 + B1_Mus1 SINE Alu 1 148 0 3 1615 367 274 84 52 chr5 135108669 135108823 -17428436 + B4 SINE B4 65 223 -69 3 1615 583 135 122 38 chr5 135108694 135108825 -17428434 + B1_Mur4 SINE Alu 9 150 0 3 1615 530 267 147 15 chr5 135109054 135109252 -17428007 - ID_B1 SINE B4 0 224 1 3 1615 372 246 148 16 chr5 135109339 135109467 -17427792 + B3 SINE B2 12 156 -60 3 1615 501 216 35 35 chr5 135109512 135109627 -17427632 + B1_Mur1 SINE Alu 34 148 -1 4 1615 248 182 23 0 chr5 135109631 135109675 -17427584 - B1_Mur3 SINE Alu -54 95 51 4 1615 1188 75 0 0 chr5 135109676 135109823 -17427436 + B1_Mus1 SINE Alu 2 148 0 4 1615 325 212 0 43 chr5 135109843 135109912 -17427347 - PB1D9 SINE Alu -53 67 2 4 1615 1016 140 42 16 chr5 135110200 135110389 -17426870 + B2_Mm2 SINE B2 2 195 0 4 1615 696 235 152 5 chr5 135110448 135110632 -17426627 + B3 SINE B2 2 212 -4 4 1615 1407 68 0 55 chr5 135110884 135111043 -17426216 + B2_Mm1a SINE B2 2 160 -33 4 1615 207 0 0 0 chr5 135111043 135111066 -17426193 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4 1615 1407 68 0 55 chr5 135111066 135111108 -17426151 + B2_Mm1a SINE B2 161 192 -1 4 1615 1138 78 0 0 chr5 135111148 135111289 -17425970 + B1_Mus1 SINE Alu 4 144 -4 4 1615 1243 41 7 0 chr5 135112141 135112287 -17424972 + B1_Mus1 SINE Alu 2 148 0 4 1615 411 141 151 11 chr5 135112337 135112430 -17424829 + B1_Mm SINE Alu 34 139 -8 4 1615 221 204 18 53 chr5 135112443 135112500 -17424759 + B3 SINE B2 1 55 -161 4 1615 417 215 46 38 chr5 135112638 135112757 -17424502 + PB1D9 SINE Alu 2 120 0 4 1615 1711 31 0 0 chr5 135112818 135113010 -17424249 - B2_Mm1a SINE B2 0 193 2 4 1615 1037 82 0 64 chr5 135113055 135113211 -17424048 + B1_Mus2 SINE Alu 2 147 0 4 1615 328 272 16 24 chr5 135113431 135113524 -17423735 - PB1D10 SINE Alu -9 111 16 4 1615 473 263 117 29 chr5 135113581 135113718 -17423541 + B1_Mur1 SINE Alu 1 149 0 4 1615 245 246 115 0 chr5 135114185 135114246 -17423013 - ID4 SINE ID -12 71 4 4 1615 35 95 0 0 chr5 135115302 135115407 -17421852 + GC_rich Low_complexity Low_complexity 1 105 0 4 1615 304 229 0 28 chr5 135115564 135115636 -17421623 - ID_B1 SINE B4 -18 206 137 4 1615 207 0 0 0 chr5 135115894 135115917 -17421342 + (TG)n Simple_repeat Simple_repeat 1 23 0 4 1615 218 260 0 0 chr5 135115963 135116013 -17421246 + PB1D7 SINE Alu 6 55 -65 4 1615 203 61 0 29 chr5 135116018 135116052 -17421207 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 4 1615 419 236 34 0 chr5 135116193 135116282 -17420977 + RSINE1 SINE B4 3 94 -71 4 1615 465 19 0 0 chr5 135116282 135116336 -17420923 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1615 306 0 0 0 chr5 135116336 135116369 -17420890 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1615 279 0 0 0 chr5 135116404 135116435 -17420824 + (A)n Simple_repeat Simple_repeat 1 31 0 4 1615 796 175 0 0 chr5 135116478 135116621 -17420638 + B1_Mus2 SINE Alu 5 147 0 4 1615 666 242 81 72 chr5 135116722 135116931 -17420328 + B3 SINE B2 1 211 -5 4 1615 1163 64 0 0 chr5 135116942 135117082 -17420177 + B1_Mus2 SINE Alu 2 141 -6 4 1615 412 286 87 0 chr5 135117298 135117424 -17419835 + B1F SINE Alu 11 147 -2 4 1615 351 148 373 18 chr5 135117836 135117946 -17419313 - B2_Mm2 SINE B2 0 195 47 4 1615 1264 98 11 0 chr5 135118015 135118189 -17419070 - B2_Mm1t SINE B2 -13 180 5 4 1615 877 138 7 0 chr5 135118196 135118334 -17418925 - B1_Mus2 SINE Alu 0 147 9 4 1615 430 195 31 92 chr5 135118222 135118352 -17418907 - MT2B LTR ERVL -323 278 157 4 1615 404 217 0 24 chr5 135118342 135118427 -17418832 - ID_B1 SINE B4 -64 160 78 4 1615 495 248 121 27 chr5 135118460 135118609 -17418650 - RSINE1 SINE B4 0 165 3 4 1615 848 131 21 14 chr5 135118628 135118768 -17418491 - B1_Mus1 SINE Alu 0 148 8 4 1615 53 26 0 13 chr5 135118768 135118828 -17418431 + AT_rich Low_complexity Low_complexity 1 60 0 4 1615 1197 68 0 7 chr5 135118828 135118976 -17418283 + B1_Mus2 SINE Alu 1 147 0 4 1615 53 26 0 13 chr5 135118976 135118993 -17418266 + AT_rich Low_complexity Low_complexity 1 17 0 4 1615 261 0 0 0 chr5 135119000 135119029 -17418230 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1615 282 29 0 0 chr5 135119029 135119063 -17418196 + (GA)n Simple_repeat Simple_repeat 1 35 0 4 1615 369 0 0 0 chr5 135119140 135119181 -17418078 + (TC)n Simple_repeat Simple_repeat 2 42 0 4 1615 335 262 11 57 chr5 135119211 135119357 -17417902 - RSINE1 SINE B4 -85 139 3 4 1615 244 267 118 10 chr5 135119637 135119739 -17417520 + PB1D10 SINE Alu 2 114 -3 4 1615 278 250 140 18 chr5 135119972 135120086 -17417173 + RMER15 LTR ERVL 298 425 -150 4 1615 798 157 31 203 chr5 135120120 135120376 -17416883 - B3 SINE B2 -4 212 1 4 1615 646 256 82 66 chr5 135120436 135120679 -17416580 - B4A SINE B4 -44 248 2 4 1615 497 277 68 15 chr5 135121042 135121174 -17416085 - RSINE1 SINE B4 -24 141 3 4 1615 909 139 8 0 chr5 135121301 135121430 -17415829 + B1_Mus1 SINE Alu 1 130 -18 4 1615 434 270 8 73 chr5 135121430 135121545 -17415714 + ID_B1 SINE B4 113 221 -3 4 1615 337 208 14 0 chr5 135121543 135121615 -17415644 + B4A SINE B4 85 157 -135 4 1615 346 277 89 7 chr5 135121620 135121741 -17415518 - B1F SINE Alu -18 131 2 4 1615 333 272 110 16 chr5 135121952 135122079 -17415180 + RSINE1 SINE B4 27 165 0 4 1615 482 194 0 31 chr5 135122110 135122206 -17415053 - B1_Mur2 SINE Alu -8 141 49 4 1615 688 230 144 0 chr5 135122249 135122436 -17414823 + B4 SINE B4 19 232 -60 4 1615 769 230 111 17 chr5 135122436 135122617 -17414642 + B3A SINE B2 1 198 0 4 1615 1193 56 0 0 chr5 135122660 135122802 -17414457 + B1_Mus1 SINE Alu 2 143 -5 4 1615 773 183 220 11 chr5 135122802 135122979 -17414280 - B3 SINE B2 -1 215 2 4 1615 240 184 0 0 chr5 135122990 135123039 -17414220 - B3 SINE B2 -3 213 165 4 1615 269 213 131 0 chr5 135123065 135123126 -17414133 - B3 SINE B2 -146 70 2 4 1615 291 277 11 11 chr5 135123537 135123559 -17413700 - PB1D10 SINE Alu -21 96 3 4 1615 308 250 14 0 chr5 135123559 135123631 -17413628 - ID_B1 SINE B4 -68 156 84 4 1615 587 292 0 30 chr5 135123653 135123819 -17413440 - RSINE1 SINE B4 -4 161 1 4 1615 227 182 0 18 chr5 135123879 135123921 -17413338 + CT-rich Low_complexity Low_complexity 17 57 0 4 1615 1237 61 0 0 chr5 135123921 135124068 -17413191 - B1_Mm SINE Alu 0 147 1 4 1615 227 182 0 18 chr5 135124068 135124081 -17413178 + polypyrimidine Low_complexity Low_complexity 4 16 0 4 1615 225 0 0 0 chr5 135124113 135124138 -17413121 + (T)n Simple_repeat Simple_repeat 1 25 0 4 1615 343 261 43 35 chr5 135124138 135124253 -17413006 - PB1D10 SINE Alu 0 117 2 4 1615 401 289 17 9 chr5 135124624 135124739 -17412520 + PB1D10 SINE Alu 1 116 -1 4 1615 1552 63 2 5 chr5 135124744 135125068 -17412191 + ZP3AR Satellite Satellite 1 322 0 4 1615 375 23 0 0 chr5 135125097 135125141 -17412118 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1615 1124 114 6 0 chr5 135125209 135125385 -17411874 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 4 1615 989 114 0 12 chr5 135125408 135125568 -17411691 + (TTTC)n Simple_repeat Simple_repeat 1 158 0 4 1615 872 102 0 16 chr5 135125571 135125700 -17411559 - B1_Mus1 SINE Alu -12 136 10 4 1615 431 328 45 25 chr5 135125593 135125793 -17411466 - B4 SINE B4 -88 204 1 4 1615 371 94 0 0 chr5 135125793 135125846 -17411413 - HY3 scRNA scRNA -41 60 8 4 1615 523 139 0 0 chr5 135125854 135125926 -17411333 - tRNA-Asp-GAY tRNA tRNA -3 72 1 4 1615 1205 75 0 0 chr5 135125946 135126093 -17411166 - B1_Mus1 SINE Alu 0 148 2 4 1615 524 91 0 13 chr5 135126146 135126224 -17411035 - B2_Mm2 SINE B2 -113 82 6 4 1615 268 140 211 0 chr5 135126554 135126611 -17410648 + PB1D9 SINE Alu 40 108 -12 4 1615 970 135 21 0 chr5 135126726 135126867 -17410392 + B1_Mus1 SINE Alu 5 148 0 4 1615 712 194 66 6 chr5 135126909 135127075 -17410184 + B3 SINE B2 40 215 -1 4 1615 1744 21 0 0 chr5 135127114 135127307 -17409952 - B2_Mm1a SINE B2 0 193 1 4 1615 230 0 0 32 chr5 135127311 135127342 -17409917 + (TTTTTG)n Simple_repeat Simple_repeat 6 35 0 4 1615 495 242 31 8 chr5 135127342 135127471 -17409788 - B1_Mur1 SINE Alu 0 149 18 4 1615 466 246 163 8 chr5 135127510 135127633 -17409626 - RSINE1 SINE B4 -15 150 9 4 1615 424 252 29 0 chr5 135127812 135127915 -17409344 + PB1D7 SINE Alu 5 110 -10 4 1615 511 203 8 15 chr5 135128362 135128492 -17408767 + CT-rich Low_complexity Low_complexity 4 132 0 4 1615 892 108 0 164 chr5 135129035 135129212 -17408047 - B1_Mus1 SINE Alu 0 148 1 4 1615 29 0 0 0 chr5 135129221 135129250 -17408009 + AT_rich Low_complexity Low_complexity 1 29 0 4 1615 1693 36 0 0 chr5 135129250 135129442 -17407817 - B2_Mm1t SINE B2 0 193 2 4 1615 477 259 230 0 chr5 135129452 135129626 -17407633 - ID_B1 SINE B4 -7 217 4 4 1615 420 241 58 29 chr5 135129635 135129772 -17407487 - ID_B1 SINE B4 -3 221 81 4 1615 439 232 71 9 chr5 135129824 135129937 -17407322 + MTC LTR MaLR 1 120 -301 4 1615 535 286 42 22 chr5 135129935 135130115 -17407144 - B3 SINE B2 0 195 27 4 1615 28 48 0 0 chr5 135130115 135130157 -17407102 + AT_rich Low_complexity Low_complexity 1 42 0 4 1615 1175 61 12 18 chr5 135130227 135130395 -17406864 - B2_Mm1t SINE B2 -26 167 1 4 1615 262 246 0 0 chr5 135130395 135130451 -17406808 - ID SINE ID -162 62 7 4 1615 341 318 18 35 chr5 135130485 135130599 -17406660 - PB1D7 SINE Alu -6 114 3 4 1615 529 272 96 18 chr5 135130667 135130828 -17406431 - B3 SINE B2 -28 188 37 4 1615 2038 124 60 17 chr5 135130831 135131184 -17406075 + RLTR9A LTR ERVK 1 368 0 4 1615 1194 68 0 0 chr5 135131223 135131370 -17405889 - B1_Mus1 SINE Alu 0 148 2 5 1615 305 323 193 30 chr5 135131411 135131577 -17405682 - B3A SINE B2 -3 195 3 5 1615 250 264 165 0 chr5 135131587 135131678 -17405581 - PB1D9 SINE Alu -13 107 2 5 1615 1148 62 14 0 chr5 135131711 135131856 -17405403 - B1_Mus2 SINE Alu 0 147 1 5 1615 309 277 0 0 chr5 135133929 135134012 -17403247 + ID SINE ID 1 83 -141 5 1615 811 237 35 25 chr5 135134090 135134293 -17402966 - B3 SINE B2 0 216 12 5 1615 614 215 37 7 chr5 135134305 135134441 -17402818 - B1_Mur1 SINE Alu 0 149 10 5 1615 574 301 89 15 chr5 135134463 135134665 -17402594 - ID_B1 SINE B4 -7 217 1 5 1615 484 136 350 0 chr5 135134673 135134776 -17402483 - B1_Mur4 SINE Alu -11 139 1 5 1615 587 201 96 15 chr5 135134807 135134943 -17402316 + B1_Mus1 SINE Alu 2 148 0 5 1615 323 263 28 75 chr5 135134960 135135067 -17402192 + MT2B LTR ERVL 156 257 -344 5 1615 656 191 21 29 chr5 135134975 135135115 -17402144 + B1_Mur2 SINE Alu 10 148 -1 5 201 724 218 17 28 chr5 135135193 135135372 -17401887 + ID_B1 SINE B4 27 203 -21 5 1616 275 291 109 22 chr5 135135361 135135498 -17401761 + RSINE1 SINE B4 17 165 0 5 1616 701 253 93 44 chr5 135136038 135136306 -17400953 + ZP3AR Satellite Satellite 1 281 -1 5 1616 253 156 0 0 chr5 135136266 135136311 -17400948 + ID2 SINE ID 1 45 -38 5 1616 225 0 0 0 chr5 135136370 135136395 -17400864 + (TGGGGG)n Simple_repeat Simple_repeat 4 28 0 5 1616 599 250 22 0 chr5 135136909 135137045 -17400214 - ZP3AR Satellite Satellite -25 187 49 5 1616 265 281 9 64 chr5 135137781 135137891 -17399368 - ZP3AR Satellite Satellite -87 125 22 5 1616 516 258 17 0 chr5 135138242 135138362 -17398897 - RSINE1 SINE B4 -43 122 1 5 1616 323 231 43 11 chr5 135138363 135138455 -17398804 - PB1D10 SINE Alu 0 117 23 5 1616 1571 42 11 0 chr5 135138467 135138658 -17398601 - B2_Mm1a SINE B2 0 193 1 5 1616 527 266 68 27 chr5 135138919 135139066 -17398193 - RSINE1 SINE B4 0 165 13 5 1616 35 0 0 0 chr5 135139066 135139101 -17398158 + AT_rich Low_complexity Low_complexity 1 35 0 5 1616 468 315 33 7 chr5 135139132 135139282 -17397977 - B4A SINE B4 -59 233 80 5 1616 650 154 23 39 chr5 135139312 135139440 -17397819 - B1_Mur3 SINE Alu -17 132 7 5 1616 433 268 0 61 chr5 135139440 135139459 -17397800 - ID_B1 SINE B4 -17 207 70 5 1616 251 275 14 14 chr5 135139459 135139529 -17397730 - ID4_ SINE ID -13 70 1 5 1616 718 219 37 108 chr5 135139801 135140042 -17397217 - ID_B1 SINE B4 0 224 1 5 1616 821 98 32 8 chr5 135140344 135140468 -17396791 + B1_Mus2 SINE Alu 12 138 -9 5 1616 307 21 0 60 chr5 135140468 135140518 -17396741 + (CAAAC)n Simple_repeat Simple_repeat 2 48 0 5 1616 580 275 140 0 chr5 135140560 135140738 -17396521 - ID_B1 SINE B4 -20 204 2 5 1616 757 283 15 15 chr5 135140759 135140960 -17396299 - ID_B1 SINE B4 -20 204 4 5 1616 570 250 23 8 chr5 135141204 135141337 -17395922 + B1F1 SINE Alu 5 139 -10 5 1616 648 248 0 40 chr5 135141343 135141494 -17395765 + ID_B1 SINE B4 78 222 -2 5 1616 633 211 0 22 chr5 135142220 135142343 -17394916 + B1_Mus1 SINE Alu 16 136 -12 5 1616 462 36 0 0 chr5 135142343 135142399 -17394860 + (GGAA)n Simple_repeat Simple_repeat 4 59 0 5 1616 633 211 0 22 chr5 135142399 135142411 -17394848 + B1_Mus1 SINE Alu 137 148 0 5 1616 582 148 0 0 chr5 135142858 135142959 -17394300 + (GGA)n Simple_repeat Simple_repeat 2 102 0 5 1616 260 311 90 45 chr5 135142974 135143085 -17394174 + PB1D10 SINE Alu 1 116 -1 5 1616 288 232 0 109 chr5 135143221 135143313 -17393946 - B4A SINE B4 0 292 211 5 1616 484 296 65 47 chr5 135143316 135143486 -17393773 - B3A SINE B2 -1 197 25 5 1616 627 185 19 0 chr5 135143502 135143610 -17393649 - PB1D9 SINE Alu -9 111 2 5 1616 290 207 125 75 chr5 135143678 135143798 -17393461 - B4A SINE B4 -166 126 1 5 1616 797 233 70 52 chr5 135144030 135144243 -17393016 - ID_B1 SINE B4 0 224 8 5 1616 379 188 0 0 chr5 135144356 135144420 -17392839 + RSINE1 SINE B4 4 67 -98 5 1616 345 206 319 0 chr5 135144628 135144769 -17392490 + B3 SINE B2 24 209 -7 5 1616 822 154 182 6 chr5 135145317 135145493 -17391766 - B3 SINE B2 -9 207 1 5 1616 297 0 0 0 chr5 135145673 135145706 -17391553 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1616 521 293 93 0 chr5 135145816 135145966 -17391293 - RSINE1 SINE B4 0 165 2 5 1616 330 303 10 10 chr5 135146037 135146137 -17391122 + MTEb LTR MaLR 280 379 0 5 1616 365 278 146 29 chr5 135146596 135146733 -17390526 - RSINE1 SINE B4 -2 163 11 5 1616 1209 68 0 0 chr5 135146757 135146903 -17390356 - B1_Mus2 SINE Alu 0 147 2 5 1616 1123 114 0 22 chr5 135146908 135146925 -17390334 - B2_Mm2 SINE B2 -20 175 160 5 1616 351 0 0 0 chr5 135146925 135146964 -17390295 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 5 1616 1123 114 0 22 chr5 135146964 135147125 -17390134 - B2_Mm2 SINE B2 -36 159 1 5 1616 705 199 16 120 chr5 135147144 135147327 -17389932 - RSINE1 SINE B4 0 165 2 5 1616 195 129 0 0 chr5 135148067 135148098 -17389161 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 5 1616 436 169 13 0 chr5 135148145 135148222 -17389037 - ZP3AR Satellite Satellite -88 124 47 5 1616 471 256 131 10 chr5 135149112 135149276 -17387983 - B3A SINE B2 -34 182 6 5 1616 289 228 0 0 chr5 135149336 135149393 -17387866 + ID SINE ID 1 57 -167 5 1616 207 121 88 29 chr5 135149396 135149434 -17387825 + A-rich Low_complexity Low_complexity 1 39 0 5 1616 1095 128 36 46 chr5 135149434 135149630 -17387629 + B2_Mm2 SINE B2 1 194 -1 5 1616 207 121 88 29 chr5 135149630 135149659 -17387600 + A-rich Low_complexity Low_complexity 40 72 0 5 1616 357 231 64 6 chr5 135149672 135149777 -17387482 + PB1D7 SINE Alu 23 146 -3 5 1616 438 275 20 72 chr5 135149789 135149942 -17387317 + ID_B1 SINE B4 78 222 -2 5 1616 811 183 24 0 chr5 135149949 135150127 -17387132 + B3 SINE B2 2 192 -6 5 1616 347 249 12 0 chr5 135150109 135150205 -17387054 + B1_Mur2 SINE Alu 33 132 -17 5 1616 30 0 0 0 chr5 135150208 135150238 -17387021 + AT_rich Low_complexity Low_complexity 1 30 0 5 1616 353 250 179 36 chr5 135150415 135150527 -17386732 + B1_Mur1 SINE Alu 12 139 -10 5 1616 442 270 39 39 chr5 135150538 135150692 -17386567 - RSINE1 SINE B4 -5 160 7 5 1616 462 259 89 0 chr5 135150719 135150854 -17386405 - B1_Mur3 SINE Alu -2 147 1 5 1616 315 241 20 50 chr5 135151150 135151263 -17385996 + B1_Mur4 SINE Alu 1 106 -11 5 1616 252 77 0 0 chr5 135151263 135151302 -17385957 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 5 1616 195 69 0 0 chr5 135152587 135152616 -17384643 + (CAG)n Simple_repeat Simple_repeat 2 30 0 5 1616 879 184 119 21 chr5 135152837 135153031 -17384228 - ID_B1 SINE B4 -10 214 2 5 1616 338 267 0 0 chr5 135153032 135153107 -17384152 - ID_B1 SINE B4 -69 155 81 5 1616 934 251 33 0 chr5 135153329 135153540 -17383719 + ID_B1 SINE B4 2 219 -5 5 1616 1103 159 138 5 chr5 135155377 135155573 -17381686 - URR1A DNA MER1_type 0 226 5 5 1616 308 214 14 41 chr5 135155608 135155681 -17381578 + ID4 SINE ID 3 73 -10 5 1616 441 266 20 135 chr5 135155722 135155870 -17381389 + RSINE1 SINE B4 4 134 -31 5 1616 832 280 14 32 chr5 135157398 135157616 -17379643 + B4A SINE B4 2 215 -77 5 1616 432 0 0 0 chr5 135157616 135157664 -17379595 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 5 1616 378 239 171 55 chr5 135157672 135157818 -17379441 + RSINE1 SINE B4 3 165 0 5 1616 272 296 121 10 chr5 135157854 135157953 -17379306 + PB1D10 SINE Alu 1 110 -7 5 1616 263 244 48 60 chr5 135157958 135158041 -17379218 + ID4 SINE ID 2 83 0 5 1616 408 143 0 0 chr5 135158093 135158163 -17379096 + (GGGA)n Simple_repeat Simple_repeat 2 71 0 5 1616 1237 169 5 46 chr5 135158405 135158622 -17378637 - B3 SINE B2 -8 208 1 5 1616 401 292 56 92 chr5 135158645 135158681 -17378578 - B2_Mm2 SINE B2 -5 190 156 5 1616 438 20 0 0 chr5 135158681 135158732 -17378527 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1616 650 258 17 19 chr5 135158732 135158891 -17378368 - B3A SINE B2 -40 155 2 5 1616 234 319 24 65 chr5 135158981 135159105 -17378154 + YREP_Mm Unknown Unknown 173 291 -1521 5 1616 902 222 32 0 chr5 135158996 135159181 -17378078 - ID_B1 SINE B4 -7 217 27 5 1616 1176 62 0 7 chr5 135159235 135159382 -17377877 + B1_Mus1 SINE Alu 3 148 0 5 1616 246 62 0 0 chr5 135159382 135159414 -17377845 + (A)n Simple_repeat Simple_repeat 1 32 0 5 1616 477 292 32 19 chr5 135159454 135159611 -17377648 - B4A SINE B4 -6 286 128 5 1616 500 0 0 16 chr5 135159631 135159692 -17377567 + (GAGAA)n Simple_repeat Simple_repeat 5 64 0 5 1616 2490 146 85 19 chr5 135159703 135160186 -17377073 + RMER15 LTR ERVL 61 575 0 5 1616 366 287 185 0 chr5 135160191 135160299 -17376960 - B4 SINE B4 -164 128 1 5 1616 188 356 0 0 chr5 135160724 135160783 -17376476 + MIR SINE MIR 68 126 -136 5 1616 339 189 13 13 chr5 135160861 135160936 -17376323 - ID_B1 SINE B4 0 224 150 5 1616 941 275 37 63 chr5 135161249 135161548 -17375711 + B4A SINE B4 2 292 0 5 1616 1011 197 26 35 chr5 135161673 135161899 -17375360 - ID_B1 SINE B4 0 224 1 5 1616 365 139 60 48 chr5 135161941 135162024 -17375235 + PB1 SINE Alu 37 120 -7 5 1616 228 366 12 0 chr5 135162207 135162289 -17374970 + RSINE1 SINE B4 68 150 -15 5 1616 259 296 72 15 chr5 135163123 135163240 -17374019 - MIR3 SINE MIR -23 185 70 5 1616 233 236 30 18 chr5 135163719 135163801 -17373458 - MIRm SINE MIR -118 158 75 6 1616 189 147 0 0 chr5 135163871 135163905 -17373354 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 6 1616 22 56 0 0 chr5 135164317 135164353 -17372906 + GC_rich Low_complexity Low_complexity 1 36 0 6 1616 29 78 0 0 chr5 135164487 135164551 -17372708 + GC_rich Low_complexity Low_complexity 1 64 0 6 1616 671 179 13 67 chr5 135165356 135165506 -17371753 + ID_B1 SINE B4 11 152 -72 6 1616 750 118 79 36 chr5 135165834 135165974 -17371285 + B1_Mur3 SINE Alu 2 147 -2 6 1616 411 323 55 0 chr5 135165994 135166121 -17371138 + ID_B1 SINE B4 91 224 0 6 1616 1769 144 156 14 chr5 135166267 135166620 -17370639 - MTC LTR MaLR -18 403 1 6 1616 25 31 0 0 chr5 135166733 135166765 -17370494 + AT_rich Low_complexity Low_complexity 1 32 0 6 1616 761 129 192 37 chr5 135166787 135166948 -17370311 + B2_Mm2 SINE B2 1 186 -9 6 1616 542 302 32 32 chr5 135166974 135166999 -17370260 - RSINE1 SINE B4 0 165 141 6 1616 450 0 0 0 chr5 135166999 135167049 -17370210 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1616 537 302 32 32 chr5 135167049 135167177 -17370082 - RSINE1 SINE B4 -25 140 12 6 1616 231 36 0 0 chr5 135167211 135167239 -17370020 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1616 411 225 176 15 chr5 135167240 135167371 -17369888 - RSINE1 SINE B4 -11 154 3 6 1616 1152 61 0 0 chr5 135167403 135167550 -17369709 + B1_Mus2 SINE Alu 1 147 0 6 1616 180 0 114 0 chr5 135167558 135167593 -17369666 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1616 258 233 0 48 chr5 135168113 135168176 -17369083 + B4A SINE B4 1 60 -232 6 1616 545 169 0 11 chr5 135168286 135168376 -17368883 - B3 SINE B2 -127 89 1 6 1616 536 236 39 31 chr5 135168440 135168567 -17368692 - ID_B1 SINE B4 -5 219 92 6 1616 256 363 33 11 chr5 135168485 135168577 -17368682 - PB1D10 SINE Alu -22 95 2 6 1616 804 277 57 51 chr5 135168588 135168919 -17368340 - L1M3 LINE L1 -2459 3681 3349 6 1616 682 309 40 84 chr5 135169006 135169328 -17367931 - ORR1E LTR MaLR -51 308 1 6 1616 380 270 14 100 chr5 135169328 135169468 -17367791 - ZP3AR Satellite Satellite -79 133 6 6 1616 254 229 16 16 chr5 135169482 135169544 -17367715 - PB1D10 SINE Alu 0 117 56 6 1616 357 24 0 0 chr5 135169544 135169586 -17367673 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1616 261 0 0 0 chr5 135169586 135169614 -17367645 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 6 1616 594 234 9 31 chr5 135169622 135169786 -17367473 - B3 SINE B2 -13 180 27 6 1616 5698 46 4 1 chr5 135169806 135170522 -17366737 - L1_Mus1 LINE L1 0 6567 5850 6 1616 279 273 0 0 chr5 135170560 135170626 -17366633 - PB1D10 SINE Alu -51 66 1 6 1616 270 355 152 17 chr5 135170628 135170923 -17366336 - L2 LINE L2 -607 2812 2478 6 1616 247 266 47 0 chr5 135171084 135171148 -17366111 - RMER15 LTR ERVL -136 439 373 6 1616 934 175 73 0 chr5 135171153 135171330 -17365929 + RLTR18B LTR ERVK 1 190 -322 6 1616 2780 151 22 10 chr5 135171330 135171838 -17365421 - RMER20A LTR ERVK 0 516 3 6 1616 1240 139 9 192 chr5 135171839 135171962 -17365297 + RLTR18B LTR ERVK 185 271 -241 6 1616 1193 28 7 0 chr5 135171962 135172107 -17365152 - B1_Mus2 SINE Alu 0 147 2 6 1616 1240 139 9 192 chr5 135172107 135172322 -17364937 + RLTR18B LTR ERVK 272 461 -51 6 1616 1439 244 113 13 chr5 135172908 135173306 -17363953 - RMER15-int LTR ERVL -360 4639 4202 6 1616 634 261 190 14 chr5 135173323 135173607 -17363652 - ORR1E LTR MaLR 0 359 26 6 1616 583 228 94 14 chr5 135173687 135173825 -17363434 - RSINE1 SINE B4 -11 154 6 6 1616 1267 209 36 125 chr5 135174044 135174404 -17362855 - MTE2a LTR MaLR -42 337 10 6 1616 1434 288 42 12 chr5 135174417 135174912 -17362347 - RMER15-int LTR ERVL -4109 890 381 6 1616 372 43 0 0 chr5 135175056 135175102 -17362157 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 6 1616 514 318 71 52 chr5 135175690 135175959 -17361300 - RMER15-int LTR ERVL -4724 275 2 6 1616 406 314 156 20 chr5 135175960 135176204 -17361055 - RMER15 LTR ERVL 0 575 299 6 1616 243 0 0 0 chr5 135176457 135176484 -17360775 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1616 387 0 0 0 chr5 135176502 135176545 -17360714 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1616 343 283 75 0 chr5 135176796 135176902 -17360357 + PB1D10 SINE Alu 3 116 -1 6 1616 429 200 33 11 chr5 135177024 135177115 -17360144 - RSINE1 SINE B4 -21 144 52 6 1616 1469 98 0 0 chr5 135177506 135177953 -17359306 - ZP3AR Satellite Satellite -36 447 1 6 1616 243 0 0 0 chr5 135178059 135178086 -17359173 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 6 1616 551 237 165 70 chr5 135178101 135178292 -17358967 + B4 SINE B4 6 217 -75 6 1616 585 0 0 0 chr5 135178292 135178357 -17358902 + (GA)n Simple_repeat Simple_repeat 1 65 0 6 1616 387 105 0 0 chr5 135178966 135179023 -17358236 + (TGGA)n Simple_repeat Simple_repeat 3 59 0 6 1616 552 56 0 0 chr5 135179784 135179856 -17357403 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 6 1616 477 0 0 0 chr5 135179950 135180003 -17357256 + (TC)n Simple_repeat Simple_repeat 2 54 0 6 1616 913 272 39 0 chr5 135180653 135180955 -17356304 - ZP3AR Satellite Satellite -14 313 1 6 1616 323 305 53 0 chr5 135180978 135181073 -17356186 - B1F SINE Alu -9 140 41 6 1616 618 277 157 6 chr5 135181814 135181992 -17355267 - B4A SINE B4 -86 206 2 6 1616 976 187 60 6 chr5 135182688 135182907 -17354352 - ZP3AR Satellite Satellite -34 231 1 6 1616 512 280 72 67 chr5 135183140 135183330 -17353929 - ID_B1 SINE B4 -25 267 75 6 1616 186 143 0 0 chr5 135183706 135183741 -17353518 + (CAG)n Simple_repeat Simple_repeat 2 36 0 6 1616 432 346 0 8 chr5 135183985 135184116 -17353143 - ID_B1 SINE B4 -1 223 94 6 1616 255 130 0 0 chr5 135184154 135184208 -17353051 + (TTTTTG)n Simple_repeat Simple_repeat 6 59 0 6 1616 798 201 28 0 chr5 135184208 135184352 -17352907 - B1_Mus1 SINE Alu 0 148 1 6 1616 1059 73 93 88 chr5 135184355 135184549 -17352710 - B2_Mm2 SINE B2 0 195 1 6 1616 320 287 20 50 chr5 135184570 135184669 -17352590 - PB1D10 SINE Alu 0 117 22 6 1616 235 328 10 164 chr5 135184590 135184798 -17352461 - ID_B1 SINE B4 -48 176 1 6 1616 1073 158 0 5 chr5 135184748 135184932 -17352327 - ZP3AR Satellite Satellite -14 198 16 6 1616 354 266 37 0 chr5 135184951 135185060 -17352199 - PB1D7 SINE Alu -6 114 2 6 1616 279 0 0 0 chr5 135185262 135185293 -17351966 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1616 439 244 126 34 chr5 135185705 135185824 -17351435 - ID_B1 SINE B4 -11 213 84 6 1616 180 182 0 0 chr5 135186065 135186098 -17351161 + L2b LINE L2 3128 3160 -215 6 1616 389 205 0 24 chr5 135186509 135186594 -17350665 - ID4_ SINE ID -60 92 8 6 1616 445 216 45 9 chr5 135186543 135186655 -17350604 - ZP3AR Satellite Satellite -55 157 42 6 1616 422 315 23 8 chr5 135186678 135186806 -17350453 - B1F SINE Alu -6 143 14 6 1616 333 248 0 92 chr5 135186930 135187094 -17350165 + (CCCCAG)n Simple_repeat Simple_repeat 3 151 0 6 1616 639 164 359 0 chr5 135187265 135187424 -17349835 - B3 SINE B2 0 216 1 6 1616 762 157 97 0 chr5 135187432 135187566 -17349693 - B1_Mur1 SINE Alu -2 147 1 6 1616 718 255 9 47 chr5 135187599 135187645 -17349614 - ID_B1 SINE B4 -16 208 167 6 1616 234 0 0 0 chr5 135187645 135187671 -17349588 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1616 1094 66 0 0 chr5 135187671 135187808 -17349451 - B1_Mm SINE Alu -10 137 1 6 1616 718 255 9 47 chr5 135187808 135187974 -17349285 - ID_B1 SINE B4 -58 166 5 6 1616 291 291 0 0 chr5 135188416 135188550 -17348709 + (CCA)n Simple_repeat Simple_repeat 1 134 0 6 1616 343 291 15 10 chr5 135188604 135188747 -17348512 + MIR SINE MIR 2 145 -131 6 1616 326 313 0 0 chr5 135188860 135188943 -17348316 - ID4 SINE ID 0 83 1 6 1616 1250 88 5 0 chr5 135188943 135189136 -17348123 - ZP3AR Satellite Satellite -11 201 8 6 1616 375 60 0 0 chr5 135189156 135189206 -17348053 + (TTA)n Simple_repeat Simple_repeat 2 51 0 6 1616 335 241 0 12 chr5 135189209 135189289 -17347970 - PB1D10 SINE Alu -9 108 30 6 1616 686 293 6 6 chr5 135189622 135189797 -17347462 + ID_B1 SINE B4 2 176 -48 6 1616 402 327 23 17 chr5 135190263 135190437 -17346822 - B4A SINE B4 -75 217 43 6 1616 590 227 0 8 chr5 135190445 135190565 -17346694 - RSINE1 SINE B4 -29 136 18 6 1616 435 249 14 22 chr5 135191710 135192088 -17345171 + (TGGA)n Simple_repeat Simple_repeat 1 374 0 6 1616 264 188 0 0 chr5 135193110 135193179 -17344080 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 6 1616 206 370 9 0 chr5 135193298 135193406 -17343853 + (TCCA)n Simple_repeat Simple_repeat 1 109 0 6 1616 269 267 65 25 chr5 135194300 135194411 -17342848 - ID4 SINE ID -28 124 10 6 1616 1496 62 1 0 chr5 135194390 135194660 -17342599 - ZP3AR Satellite Satellite -34 270 1 6 1616 208 391 0 0 chr5 135195276 135195368 -17341891 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 1616 304 210 0 0 chr5 135195507 135195569 -17341690 - B4 SINE B4 -230 62 1 6 1616 734 313 4 17 chr5 135195569 135195800 -17341459 - B4A SINE B4 -64 228 1 6 1616 362 162 0 63 chr5 135195814 135195893 -17341366 - PB1D10 SINE Alu -6 111 38 6 1616 224 297 20 10 chr5 135196800 135196902 -17340357 + GA-rich Low_complexity Low_complexity 3 105 0 6 1616 335 328 6 22 chr5 135196945 135197123 -17340136 + GA-rich Low_complexity Low_complexity 2 176 0 6 1616 290 211 0 9 chr5 135197169 135197274 -17339985 + (TGGA)n Simple_repeat Simple_repeat 1 104 0 6 1616 227 238 0 31 chr5 135197316 135197381 -17339878 + GA-rich Low_complexity Low_complexity 1 63 0 6 1616 268 228 0 34 chr5 135198083 135198142 -17339117 - MIRm SINE MIR -125 151 95 6 1616 291 309 22 17 chr5 135198391 135198569 -17338690 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 6 1616 380 196 35 0 chr5 135198628 135198771 -17338488 + (TGGA)n Simple_repeat Simple_repeat 3 150 0 6 1616 746 211 16 8 chr5 135198794 135199051 -17338208 + (TGGA)n Simple_repeat Simple_repeat 1 259 0 6 1616 273 119 0 0 chr5 135199212 135199254 -17338005 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 6 1616 520 169 14 108 chr5 135199403 135199542 -17337717 - B1F SINE Alu 0 149 24 6 1616 825 189 0 0 chr5 135199567 135199731 -17337528 + (TA)n Simple_repeat Simple_repeat 1 164 0 6 1616 909 277 71 36 chr5 135199745 135200026 -17337233 - B4 SINE B4 0 292 2 7 1616 423 0 0 0 chr5 135200127 135200174 -17337085 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1616 198 0 0 0 chr5 135200174 135200195 -17337064 + (TA)n Simple_repeat Simple_repeat 1 22 0 7 1616 205 329 0 0 chr5 135200199 135200272 -17336987 + (TG)n Simple_repeat Simple_repeat 2 74 0 7 1616 465 333 12 0 chr5 135200295 135200457 -17336802 + (TG)n Simple_repeat Simple_repeat 1 164 0 7 1616 495 271 107 121 chr5 135200458 135200748 -17336511 - B4 SINE B4 0 292 7 7 1616 1073 191 22 39 chr5 135201157 135201386 -17335873 - URR1A DNA MER1_type 0 226 2 7 1616 224 266 0 59 chr5 135201467 135201535 -17335724 - B4 SINE B4 -207 85 22 7 1616 1286 137 7 29 chr5 135201781 135202007 -17335252 - ZP3AR Satellite Satellite 0 221 1 7 1616 303 319 34 50 chr5 135202012 135202131 -17335128 - PB1D10 SINE Alu 0 117 1 7 1616 374 89 0 0 chr5 135202658 135202714 -17334545 - ZP3AR Satellite Satellite -109 103 48 7 1616 323 268 14 11 chr5 135202718 135202813 -17334446 - PB1D10 SINE Alu -7 120 25 7 1616 309 247 143 0 chr5 135202941 135203018 -17334241 + 5S rRNA rRNA 2 89 -32 7 1616 477 0 0 0 chr5 135203552 135203605 -17333654 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 7 1616 984 219 19 5 chr5 135203608 135203814 -17333445 - ID_B1 SINE B4 -13 211 3 7 1616 783 183 194 0 chr5 135203827 135203864 -17333395 - B3 SINE B2 -1 215 179 7 1616 318 26 0 0 chr5 135203864 135203903 -17333356 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 7 1616 783 183 194 0 chr5 135203903 135204045 -17333214 - B3 SINE B2 -38 178 2 7 1616 588 224 9 0 chr5 135204060 135204176 -17333083 - PB1D10 SINE Alu 0 117 1 7 1616 714 217 87 0 chr5 135204176 135204242 -17333017 - ID SINE ID -143 81 2 7 1616 240 35 0 0 chr5 135204753 135204782 -17332477 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1616 252 301 0 0 chr5 135205157 135205270 -17331989 + (CCA)n Simple_repeat Simple_repeat 2 114 0 7 1616 1504 116 4 4 chr5 135205790 135206015 -17331244 + URR1B DNA MER1_type 1 225 0 7 1616 419 256 56 64 chr5 135206072 135206197 -17331062 - ID_B1 SINE B4 -1 223 100 7 1616 620 205 6 0 chr5 135206239 135206395 -17330864 + (TA)n Simple_repeat Simple_repeat 2 158 0 7 1616 753 230 0 0 chr5 135206402 135206541 -17330718 - B1_Mur1 SINE Alu -9 140 2 7 1616 465 215 82 37 chr5 135206548 135206683 -17330576 - B1F SINE Alu 0 149 9 7 1616 929 227 14 5 chr5 135207414 135207635 -17329624 - ID_B1 SINE B4 0 224 2 7 1616 290 262 25 12 chr5 135208041 135208122 -17329137 + ID SINE ID 3 84 -140 7 1616 189 281 82 20 chr5 135208511 135208609 -17328650 + MIRm SINE MIR 41 144 -132 7 1616 582 54 0 0 chr5 135208642 135208716 -17328543 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 7 1616 967 111 7 0 chr5 135208717 135208852 -17328407 - B1_Mus1 SINE Alu -12 136 1 7 1616 808 253 32 8 chr5 135208852 135209065 -17328194 - B3A SINE B2 -3 213 1 7 1616 862 235 45 0 chr5 135209088 135209288 -17327971 - B3 SINE B2 -5 211 3 7 1616 813 281 9 18 chr5 135209293 135209514 -17327745 - ID_B1 SINE B4 -3 221 3 7 1616 702 243 0 0 chr5 135209535 135209683 -17327576 - B1_Mur1 SINE Alu -1 148 1 7 1616 380 271 42 0 chr5 135209696 135209792 -17327467 - B1F SINE Alu -17 132 33 7 1616 362 298 64 0 chr5 135209793 135209887 -17327372 - B1F1 SINE Alu -49 100 1 7 1616 253 271 57 86 chr5 135209887 135209898 -17327361 - MT2B LTR ERVL -348 253 152 7 1616 436 229 63 21 chr5 135210377 135210520 -17326739 + B1F1 SINE Alu 1 149 0 7 1616 679 271 7 0 chr5 135210522 135210673 -17326586 + RSINE1 SINE B4 12 163 -2 7 1616 220 369 45 11 chr5 135210673 135210700 -17326559 + B2_Mm2 SINE B2 11 194 -1 7 1616 302 297 0 0 chr5 135210729 135210803 -17326456 + ID4_ SINE ID 10 83 0 7 1616 354 23 0 0 chr5 135211135 135211178 -17326081 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1616 212 261 0 0 chr5 135211178 135211224 -17326035 - ID4 SINE ID -24 59 14 7 1616 1387 129 9 7 chr5 135211194 135211501 -17325758 - ZP3AR Satellite Satellite -21 307 1 7 1616 423 219 9 37 chr5 135211511 135211620 -17325639 - PB1D10 SINE Alu -2 115 10 7 1616 611 213 0 47 chr5 135212270 135212398 -17324861 - ID_B1 SINE B4 -1 223 102 7 1616 614 277 7 0 chr5 135212590 135212727 -17324532 - ID_B1 SINE B4 -3 221 84 7 1616 270 0 0 0 chr5 135213083 135213113 -17324146 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1616 221 149 85 0 chr5 135213172 135213219 -17324040 + MIRc SINE MIR 90 140 -128 7 1616 241 245 19 0 chr5 135213309 135213362 -17323897 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1616 423 305 38 8 chr5 135213370 135213502 -17323757 - B4A SINE B4 0 292 157 7 1616 416 282 10 0 chr5 135213514 135213617 -17323642 - ID_B1 SINE B4 -117 107 4 7 1616 284 157 0 0 chr5 135213816 135213873 -17323386 - PB1 SINE Alu -11 116 49 7 1616 1177 48 0 0 chr5 135213891 135214038 -17323221 - B1_Mm SINE Alu 0 147 1 7 1616 940 209 29 10 chr5 135214090 135214298 -17322961 - ID_B1 SINE B4 0 224 13 7 1616 1560 47 0 0 chr5 135214299 135214491 -17322768 + B2_Mm1t SINE B2 1 192 -1 7 1616 636 198 8 8 chr5 135214587 135214704 -17322555 + RSINE1 SINE B4 4 120 -45 7 1616 666 137 25 33 chr5 135214705 135214826 -17322433 + PB1D9 SINE Alu 1 120 0 7 1616 1267 79 11 0 chr5 135214919 135215096 -17322163 + B2_Mm1t SINE B2 1 179 -14 7 1616 374 104 0 5 chr5 135215180 135215245 -17322014 + B2_Mm2 SINE B2 47 109 -107 7 1616 243 0 0 0 chr5 135215261 135215288 -17321971 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 7 1616 751 127 0 8 chr5 135215613 135215740 -17321519 - ZP3AR Satellite Satellite -37 175 50 7 1616 311 246 176 38 chr5 135215743 135215874 -17321385 - B1F SINE Alu 0 149 1 7 1616 282 346 37 19 chr5 135215877 135216039 -17321220 - MIRc SINE MIR -60 208 44 7 1616 419 268 20 27 chr5 135217151 135217297 -17319962 - ID_B1 SINE B4 -77 147 3 7 1616 479 246 0 0 chr5 135217727 135217841 -17319418 - PB1D10 SINE Alu -3 114 1 7 1616 470 228 8 26 chr5 135217877 135217994 -17319265 + RSINE1 SINE B4 11 125 -40 7 1616 458 252 27 9 chr5 135218059 135218171 -17319088 + ID_B1 SINE B4 86 199 -25 7 1616 290 284 0 13 chr5 135218177 135218252 -17319007 + B1F SINE Alu 68 141 -8 7 1616 288 229 17 17 chr5 135218789 135218909 -17318350 + C-rich Low_complexity Low_complexity 3 122 0 7 1616 275 271 0 56 chr5 135218919 135219009 -17318250 - ID_B1 SINE B4 0 224 140 7 1616 314 252 16 33 chr5 135219009 135219036 -17318223 - B1F SINE Alu 0 149 1 7 1616 253 431 0 7 chr5 135219154 135219299 -17317960 + B4 SINE B4 61 204 -88 7 1616 503 206 0 46 chr5 135219187 135219316 -17317943 + B1_Mur2 SINE Alu 9 131 -18 7 1616 640 250 43 0 chr5 135219348 135219488 -17317771 + ID_B1 SINE B4 79 224 0 7 1616 363 241 0 12 chr5 135219540 135219624 -17317635 + ID4_ SINE ID 1 83 0 7 1616 250 259 24 111 chr5 135220181 135220307 -17316952 + MER5B DNA MER1_type 14 128 -50 7 1616 521 263 21 55 chr5 135220439 135220584 -17316675 - ID_B1 SINE B4 -5 219 80 7 1616 273 222 0 0 chr5 135220632 135220686 -17316573 - B1F SINE Alu -14 135 82 7 1616 901 270 14 5 chr5 135221171 135221383 -17315876 - ID_B1 SINE B4 -8 216 3 7 1616 212 193 121 17 chr5 135221399 135221457 -17315802 - PB1D7 SINE Alu -11 109 46 7 1616 329 254 271 23 chr5 135222144 135222321 -17314938 - ID_B1 SINE B4 -2 222 2 7 1616 450 79 0 0 chr5 135222575 135222638 -17314621 + (CA)n Simple_repeat Simple_repeat 2 64 0 7 1616 224 154 19 0 chr5 135223190 135223242 -17314017 + GA-rich Low_complexity Low_complexity 3 55 0 7 1616 423 0 0 0 chr5 135223342 135223389 -17313870 + (CA)n Simple_repeat Simple_repeat 1 47 0 7 1616 1266 90 0 0 chr5 135224749 135224927 -17312332 + (TTC)n Simple_repeat Simple_repeat 3 180 0 7 1616 646 209 25 8 chr5 135224927 135225324 -17311935 + CT-rich Low_complexity Low_complexity 1 404 0 7 1616 397 197 60 9 chr5 135225328 135225428 -17311831 - PB1D10 SINE Alu -5 112 14 7 1616 618 254 14 7 chr5 135225803 135225946 -17311313 - RSINE1 SINE B4 -10 155 12 7 1616 252 304 87 0 chr5 135225950 135226042 -17311217 + B1F SINE Alu 50 149 0 7 1616 557 246 58 7 chr5 135226036 135226163 -17311096 + ID_B1 SINE B4 76 202 -22 7 1616 342 0 0 0 chr5 135226163 135226201 -17311058 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1616 557 246 58 7 chr5 135226201 135226212 -17311047 + ID_B1 SINE B4 203 220 -4 7 1616 198 0 0 0 chr5 135226245 135226267 -17310992 + (GA)n Simple_repeat Simple_repeat 1 22 0 7 1616 259 254 169 0 chr5 135227226 135227297 -17309962 - ID4_ SINE ID 0 83 1 7 1616 1281 128 0 0 chr5 135227297 135227512 -17309747 - ZP3AR Satellite Satellite -11 215 1 7 1616 475 279 27 60 chr5 135227522 135227671 -17309588 - B1F SINE Alu -5 144 1 7 1616 409 162 0 42 chr5 135227989 135228060 -17309199 - RMER1C Other Other -240 1102 1035 7 1616 24 0 0 0 chr5 135228563 135228587 -17308672 + AT_rich Low_complexity Low_complexity 1 24 0 7 1616 373 267 29 19 chr5 135228652 135228761 -17308498 - B1F1 SINE Alu -44 103 1 7 1616 664 256 12 31 chr5 135228821 135228982 -17308277 + RSINE1 SINE B4 8 165 0 7 1616 314 255 47 82 chr5 135229017 135229188 -17308071 - MER33 DNA MER1_type -140 184 20 7 1616 293 204 0 0 chr5 135229365 135229419 -17307840 + B1F SINE Alu 94 147 -2 8 1616 1324 173 28 2 chr5 135229420 135229761 -17307498 + ZP3AR Satellite Satellite 1 349 -1 8 1616 260 288 0 15 chr5 135229747 135229814 -17307445 + ID4 SINE ID 17 82 -1 8 1616 819 213 127 0 chr5 135230543 135230740 -17306519 - ID_B1 SINE B4 0 224 3 8 1616 261 286 36 0 chr5 135230908 135230992 -17306267 + (TG)n Simple_repeat Simple_repeat 1 87 0 8 1616 446 292 0 71 chr5 135231014 135231154 -17306105 - B4A SINE B4 -90 202 73 8 1616 473 257 0 0 chr5 135231200 135231301 -17305958 - PB1D10 SINE Alu -5 112 12 8 1616 253 293 61 0 chr5 135231233 135231315 -17305944 - B4A SINE B4 -125 167 81 8 1616 323 253 11 65 chr5 135231310 135231403 -17305856 - PB1D10 SINE Alu 0 117 30 8 1616 378 157 100 0 chr5 135231399 135231469 -17305790 - B3A SINE B2 -121 77 1 8 1616 251 269 30 0 chr5 135231669 135231736 -17305523 + B4A SINE B4 89 157 -135 8 1616 435 278 0 0 chr5 135231676 135231773 -17305486 + PB1D10 SINE Alu 11 107 -10 8 1616 243 0 0 0 chr5 135232727 135232754 -17304505 + (CAGT)n Simple_repeat Simple_repeat 3 29 0 8 1616 471 35 0 0 chr5 135232754 135232810 -17304449 + (TCCC)n Simple_repeat Simple_repeat 1 57 0 8 1616 251 325 0 47 chr5 135232828 135232876 -17304383 - BC1_Mm scRNA scRNA -29 123 1 8 1616 353 198 25 0 chr5 135232876 135232957 -17304302 - ID SINE ID -141 83 1 8 1616 422 175 20 10 chr5 135232913 135233011 -17304248 - ZP3AR Satellite Satellite -74 138 40 8 1616 425 298 16 24 chr5 135233217 135233344 -17303915 - Tigger5 DNA MER2_type 0 2406 2281 8 1616 210 266 0 0 chr5 135233462 135233541 -17303718 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 8 1616 198 143 0 0 chr5 135233594 135233629 -17303630 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 8 1616 633 206 17 11 chr5 135233648 135233825 -17303434 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 8 1616 192 71 0 0 chr5 135233865 135233877 -17303382 + (TC)n Simple_repeat Simple_repeat 1 12 0 8 1616 249 128 0 0 chr5 135233877 135233924 -17303335 + (TG)n Simple_repeat Simple_repeat 2 48 0 8 1616 192 71 0 0 chr5 135233924 135233939 -17303320 + (TC)n Simple_repeat Simple_repeat 2 16 0 8 1616 465 306 162 67 chr5 135233939 135234149 -17303110 - B4 SINE B4 -2 290 61 8 1616 933 238 57 9 chr5 135234337 135234549 -17302710 + ID_B1 SINE B4 3 224 0 8 1616 273 275 38 0 chr5 135234555 135234635 -17302624 - L1M5 LINE L1 -1057 5089 5007 8 1616 358 250 0 91 chr5 135235086 135235196 -17302063 - ZP3AR Satellite Satellite -72 140 41 8 1616 216 0 0 0 chr5 135235200 135235224 -17302035 + (TTTAA)n Simple_repeat Simple_repeat 4 27 0 8 1616 1005 92 0 0 chr5 135235272 135235414 -17301845 + (GGGAGA)n Simple_repeat Simple_repeat 3 144 0 8 1616 940 125 0 0 chr5 135235541 135235669 -17301590 - B1_Mus1 SINE Alu -19 129 2 8 1616 281 238 0 24 chr5 135236011 135236093 -17301166 + (TG)n Simple_repeat Simple_repeat 1 80 0 8 1616 293 174 14 0 chr5 135236120 135236189 -17301070 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 1616 322 316 0 50 chr5 135236201 135236301 -17300958 - B4A SINE B4 0 292 198 8 1616 373 118 0 50 chr5 135236335 135236415 -17300844 + CT-rich Low_complexity Low_complexity 2 77 0 8 1616 427 313 29 29 chr5 135236417 135236555 -17300704 - B1F SINE Alu -11 138 1 8 1616 208 385 0 13 chr5 135236555 135236634 -17300625 - L2b LINE L2 -8 3367 3290 8 1616 281 224 98 76 chr5 135236668 135236760 -17300499 + B1F1 SINE Alu 2 95 -54 8 1616 279 0 0 0 chr5 135236921 135236952 -17300307 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 8 1616 536 309 56 46 chr5 135236952 135237149 -17300110 - ID_B1 SINE B4 -17 207 9 8 1616 741 181 0 0 chr5 135238503 135238720 -17298539 + (TG)n Simple_repeat Simple_repeat 1 217 0 8 1616 531 201 0 0 chr5 135238736 135238870 -17298389 + (TG)n Simple_repeat Simple_repeat 1 134 0 8 1616 556 264 93 13 chr5 135238870 135239020 -17298239 - RSINE1 SINE B4 0 165 4 8 1616 808 240 48 14 chr5 135239885 135240092 -17297167 + ID_B1 SINE B4 3 216 -8 8 1616 341 244 22 55 chr5 135240402 135240493 -17296766 + PB1D10 SINE Alu 5 92 -56 8 1616 489 300 132 11 chr5 135240520 135240702 -17296557 + B4A SINE B4 3 206 -86 8 1616 468 354 18 30 chr5 135240711 135240877 -17296382 + RSINE1 SINE B4 2 165 0 8 1616 310 274 0 56 chr5 135240887 135240976 -17296283 + B4A SINE B4 204 287 -5 8 1616 375 23 0 0 chr5 135242016 135242060 -17295199 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1616 1208 211 51 4 chr5 135242060 135242317 -17294942 - B4A SINE B4 -23 269 1 8 1616 541 292 136 0 chr5 135242640 135242794 -17294465 - B3A SINE B2 -23 175 1 8 1616 936 213 53 0 chr5 135242817 135243005 -17294254 - B3A SINE B2 0 198 1 8 1616 184 264 124 22 chr5 135243005 135243094 -17294165 - L2b LINE L2 -252 3123 3026 8 1616 181 310 138 0 chr5 135243813 135243900 -17293359 - L2c LINE L2 -3 3384 3286 8 1616 233 232 14 0 chr5 135245518 135245587 -17291672 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 1616 597 272 18 36 chr5 135245587 135245755 -17291504 - RSINE1 SINE B4 0 165 1 8 1616 311 256 37 0 chr5 135245779 135245861 -17291398 + Tigger5 DNA MER2_type 45 129 -2277 8 1616 203 0 0 36 chr5 135245864 135245892 -17291367 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 8 1616 384 261 26 124 chr5 135245894 135246047 -17291212 - ID_B1 SINE B4 -15 209 72 8 1616 884 286 13 9 chr5 135246420 135246646 -17290613 + Tigger7 DNA MER2_type 39 265 -2226 8 1616 259 283 22 97 chr5 135246766 135246941 -17290318 + B3A SINE B2 61 215 -1 8 1616 358 231 40 71 chr5 135246945 135247071 -17290188 + B1F1 SINE Alu 2 123 -26 8 1616 309 277 95 11 chr5 135247878 135247973 -17289286 + B1F SINE Alu 21 123 -26 8 1616 1125 134 8 0 chr5 135247987 135248174 -17289085 + ZP3AR Satellite Satellite 1 188 0 8 1616 309 200 120 0 chr5 135248143 135248218 -17289041 + ID SINE ID 1 84 -140 8 1616 242 337 44 11 chr5 135249135 135249225 -17288034 - B4 SINE B4 -199 93 1 8 1616 1514 72 5 22 chr5 135249183 135249517 -17287742 - ZP3AR Satellite Satellite -130 328 1 8 1616 699 288 5 64 chr5 135249534 135249738 -17287521 + B4A SINE B4 101 292 0 8 1616 810 154 71 41 chr5 135250017 135250186 -17287073 - MTEa LTR MaLR -38 341 168 8 1616 638 311 68 20 chr5 135250351 135250553 -17286706 - MT2A LTR ERVL 0 533 178 8 1616 369 185 0 15 chr5 135250553 135250619 -17286640 - PB1D9 SINE Alu -54 66 2 8 1616 638 311 68 20 chr5 135250619 135250630 -17286629 - MT2A LTR ERVL 0 177 155 8 1616 402 378 80 30 chr5 135250649 135250848 -17286411 - B3A SINE B2 -7 209 1 8 1616 340 225 100 0 chr5 135251000 135251080 -17286179 + PB1D10 SINE Alu 6 93 -24 8 1616 360 0 0 0 chr5 135251451 135251491 -17285768 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1616 490 312 0 0 chr5 135251612 135251750 -17285509 + RSINE1 SINE B4 3 140 -25 8 1616 243 170 0 21 chr5 135252101 135252149 -17285110 - L1M5 LINE L1 -1987 4159 4113 8 1616 267 302 110 81 chr5 135252190 135252399 -17284860 - MIR SINE MIR -43 219 5 8 1616 514 211 0 0 chr5 135252776 135252871 -17284388 + RSINE1 SINE B4 4 98 -67 8 1616 405 0 0 0 chr5 135252878 135252923 -17284336 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1616 221 128 21 0 chr5 135253666 135253713 -17283546 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 8 1616 385 331 109 11 chr5 135253713 135253896 -17283363 - ID_B1 SINE B4 -2 222 22 8 1616 859 264 87 36 chr5 135253980 135254107 -17283152 - B4A SINE B4 0 292 152 8 1616 804 21 0 0 chr5 135254107 135254201 -17283058 + (TG)n Simple_repeat Simple_repeat 2 95 0 8 1616 859 264 87 36 chr5 135254201 135254348 -17282911 - B4A SINE B4 -141 151 5 8 1616 308 304 0 0 chr5 135254353 135254432 -17282827 - BC1_Mm scRNA scRNA -60 92 14 8 1616 588 29 0 0 chr5 135254568 135254638 -17282621 + (TG)n Simple_repeat Simple_repeat 1 70 0 8 1616 469 262 122 8 chr5 135254638 135254761 -17282498 - RSINE1 SINE B4 -26 139 3 8 1616 545 246 21 35 chr5 135255514 135255657 -17281602 + B1F SINE Alu 1 141 -8 8 1616 649 140 0 0 chr5 135255777 135255884 -17281375 + ZP3AR Satellite Satellite 42 148 -64 8 1616 271 265 0 126 chr5 135255884 135255979 -17281280 + ID4_ SINE ID 1 83 0 8 1616 757 194 0 11 chr5 135256455 135256637 -17280622 + CT-rich Low_complexity Low_complexity 1 180 0 8 1616 733 215 0 29 chr5 135256641 135256780 -17280479 - B1_Mur2 SINE Alu -13 136 2 8 1616 259 252 184 39 chr5 135256867 135256970 -17280289 - PB1D9 SINE Alu -1 119 2 8 1616 708 274 48 0 chr5 135256987 135257155 -17280104 - B3A SINE B2 -16 182 7 8 1616 238 324 9 9 chr5 135257178 135257287 -17279972 + (TG)n Simple_repeat Simple_repeat 1 109 0 8 1616 471 311 11 84 chr5 135257287 135257466 -17279793 - B4A SINE B4 0 292 127 8 1616 449 315 75 0 chr5 135257494 135257640 -17279619 - RSINE1 SINE B4 -6 159 3 8 1616 250 228 0 34 chr5 135257646 135257705 -17279554 - B1F SINE Alu -1 148 92 8 1616 489 340 55 13 chr5 135257776 135258086 -17279173 - L2 LINE L2 -661 2758 2436 8 1616 414 0 0 0 chr5 135258226 135258272 -17278987 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1616 284 212 200 0 chr5 135258273 135258358 -17278901 - RSINE1 SINE B4 -53 112 11 8 1616 451 319 120 65 chr5 135258627 135258902 -17278357 - B4A SINE B4 -1 291 2 8 1616 677 259 57 47 chr5 135258902 135259113 -17278146 - ID_B1 SINE B4 -1 223 11 8 1616 321 349 9 0 chr5 135259139 135259245 -17278014 - PB1D10 SINE Alu -10 107 1 8 1616 394 158 52 13 chr5 135259541 135259618 -17277641 - ID4 SINE ID -3 80 1 8 1616 1327 54 3 9 chr5 135259618 135259833 -17277426 - ZP3AR Satellite Satellite -11 213 1 8 1616 429 206 0 21 chr5 135260319 135260413 -17276846 - PB1D10 SINE Alu 0 117 26 9 1616 559 160 47 12 chr5 135260428 135260684 -17276575 + (TG)n Simple_repeat Simple_repeat 1 265 0 9 1616 761 258 30 70 chr5 135260697 135260997 -17276262 - B4A SINE B4 -4 288 1 9 1616 1006 245 5 0 chr5 135261413 135261617 -17275642 - ID_B1 SINE B4 -4 220 16 9 1616 261 83 0 0 chr5 135262158 135262194 -17275065 + (CG)n Simple_repeat Simple_repeat 2 37 0 9 1616 496 215 90 69 chr5 135262207 135262352 -17274907 - B4A SINE B4 0 292 145 9 1616 874 142 0 39 chr5 135262386 135262540 -17274719 - B1_Mus1 SINE Alu 0 148 1 9 1616 239 190 0 17 chr5 135262551 135262610 -17274649 + (TG)n Simple_repeat Simple_repeat 2 59 0 9 1616 634 288 12 18 chr5 135262613 135262779 -17274480 - RSINE1 SINE B4 0 165 1 9 1616 360 308 11 0 chr5 135262781 135262872 -17274387 - B4A SINE B4 -200 92 1 9 1616 437 319 127 0 chr5 135263739 135263905 -17273354 + B4 SINE B4 88 274 -18 9 1616 569 272 49 133 chr5 135264708 135264933 -17272326 - B4A SINE B4 -4 288 83 9 1616 25 31 0 0 chr5 135264942 135264974 -17272285 + AT_rich Low_complexity Low_complexity 1 32 0 9 1616 540 286 12 58 chr5 135264976 135265147 -17272112 - RSINE1 SINE B4 0 165 3 9 1616 257 244 32 118 chr5 135265152 135265245 -17272014 - B4 SINE B4 -201 91 7 9 1616 400 247 0 0 chr5 135265258 135265343 -17271916 - B1F SINE Alu -56 93 9 9 1616 661 259 91 24 chr5 135265338 135265479 -17271780 - B4 SINE B4 -63 229 88 9 1616 288 0 0 0 chr5 135265479 135265511 -17271748 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 9 1616 661 259 91 24 chr5 135265511 135265579 -17271680 - B4 SINE B4 -205 87 8 9 1616 573 245 22 0 chr5 135265597 135265736 -17271523 - ID_B1 SINE B4 -1 223 82 9 1616 547 128 21 11 chr5 135265738 135265833 -17271426 + B1_Mur1 SINE Alu 54 149 0 9 1617 754 249 119 20 chr5 135267059 135267260 -17269999 + ID_B1 SINE B4 2 222 -2 9 1617 792 312 65 82 chr5 135267356 135267658 -17269601 + ORR1E LTR MaLR 10 305 -54 9 1617 710 254 30 74 chr5 135267658 135267888 -17269371 - ID_B1 SINE B4 -4 220 1 9 1617 792 312 65 82 chr5 135267888 135267941 -17269318 + ORR1E LTR MaLR 306 358 -1 9 1617 664 282 89 138 chr5 135267969 135268360 -17268899 - MTE2b LTR MaLR -6 373 2 9 1617 548 307 7 0 chr5 135268791 135268941 -17268318 + B3 SINE B2 1 151 -65 9 1617 520 190 8 8 chr5 135268949 135269066 -17268193 - URR1B DNA MER1_type -6 219 103 9 1617 345 316 53 35 chr5 135269220 135269446 -17267813 + L1MD LINE L1 5104 5333 -813 9 1617 183 80 0 0 chr5 135269518 135269543 -17267716 + (TC)n Simple_repeat Simple_repeat 1 25 0 9 1617 296 254 0 31 chr5 135269569 135269634 -17267625 + RSINE1 SINE B4 13 75 -90 9 1617 258 32 0 0 chr5 135269687 135269718 -17267541 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 9 1617 1211 292 80 3 chr5 135269920 135270308 -17266951 - MTD LTR MaLR -1 418 1 9 1617 542 209 55 0 chr5 135270331 135270441 -17266818 - PB1D10 SINE Alu -1 116 1 9 1617 742 313 8 39 chr5 135270555 135270580 -17266679 + B4A SINE B4 1 23 -269 9 1617 1295 154 42 0 chr5 135270580 135270794 -17266465 - URR1A DNA MER1_type -1 225 3 9 1617 742 313 8 39 chr5 135270794 135271027 -17266232 + B4A SINE B4 24 251 -41 9 1617 567 261 24 89 chr5 135271026 135271194 -17266065 + B3A SINE B2 38 194 -4 9 1617 254 349 0 46 chr5 135271185 135271272 -17265987 + B4A SINE B4 197 279 -13 9 1617 778 256 98 26 chr5 135271478 135271743 -17265516 - B4A SINE B4 -6 286 3 9 1617 570 29 0 0 chr5 135272347 135272415 -17264844 + (TC)n Simple_repeat Simple_repeat 1 68 0 9 1617 1616 39 2 0 chr5 135272452 135272955 -17264304 - ZP3AR Satellite Satellite -30 504 1 9 1617 791 195 0 94 chr5 135272982 135273163 -17264096 - RSINE1 SINE B4 0 165 2 9 1617 225 154 0 0 chr5 135273170 135273209 -17264050 + (TTA)n Simple_repeat Simple_repeat 2 40 0 9 1617 228 259 169 24 chr5 135273210 135273293 -17263966 - PB1D10 SINE Alu -2 115 21 9 1617 402 39 0 0 chr5 135274405 135274457 -17262802 + (TC)n Simple_repeat Simple_repeat 1 52 0 9 1617 252 86 0 0 chr5 135274791 135274826 -17262433 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 9 1617 689 303 85 31 chr5 135274872 135275165 -17262094 - ORR1E LTR MaLR -47 312 4 9 1617 447 35 0 0 chr5 135275474 135275531 -17261728 + (CCCA)n Simple_repeat Simple_repeat 2 58 0 9 1617 273 195 14 120 chr5 135275556 135275653 -17261606 + MTEb LTR MaLR 228 327 -52 9 1617 425 312 115 19 chr5 135276120 135276329 -17260930 - RMER15 LTR ERVL 0 575 347 9 1617 1382 230 157 35 chr5 135276905 135277243 -17260016 + MTEb LTR MaLR 1 379 0 9 1617 951 152 0 0 chr5 135277309 135277473 -17259786 + CT-rich Low_complexity Low_complexity 2 165 0 9 1617 306 187 13 39 chr5 135278535 135278613 -17258646 - B3 SINE B2 0 216 141 9 1617 411 233 81 22 chr5 135278609 135278745 -17258514 - B3 SINE B2 -15 201 58 9 1617 182 328 43 29 chr5 135279119 135279188 -17258071 - MIRc SINE MIR -154 114 45 9 1617 621 40 0 0 chr5 135279327 135279403 -17257856 + (GA)n Simple_repeat Simple_repeat 1 76 0 9 1617 566 292 89 6 chr5 135279436 135279615 -17257644 - B4 SINE B4 -5 287 94 9 1617 195 69 0 0 chr5 135279657 135279686 -17257573 + (GAGTG)n Simple_repeat Simple_repeat 3 31 0 9 1617 205 167 37 0 chr5 135279688 135279742 -17257517 + GA-rich Low_complexity Low_complexity 5 60 0 9 1617 326 242 79 20 chr5 135280524 135280625 -17256634 + MIRm SINE MIR 53 159 -117 9 1617 753 255 5 46 chr5 135280655 135280852 -17256407 - B3A SINE B2 -8 190 2 9 1617 282 224 59 15 chr5 135281066 135281134 -17256125 + B4 SINE B4 5 75 -217 9 1617 655 207 3 6 chr5 135281135 135281271 -17255988 + B3A SINE B2 2 135 -60 9 1617 685 240 0 51 chr5 135281294 135281452 -17255807 + B4 SINE B4 126 275 -17 9 1617 212 137 0 19 chr5 135281459 135281511 -17255748 + GA-rich Low_complexity Low_complexity 2 52 0 9 1617 909 35 0 0 chr5 135281561 135281674 -17255585 + (CCCCAG)n Simple_repeat Simple_repeat 4 116 0 9 1617 197 358 7 42 chr5 135282295 135282438 -17254821 - MIR SINE MIR -51 211 74 9 1617 318 274 0 0 chr5 135283027 135283162 -17254097 + G-rich Low_complexity Low_complexity 42 176 0 9 1617 304 225 28 45 chr5 135283180 135283357 -17253902 + (AGGTG)n Simple_repeat Simple_repeat 3 176 0 9 1617 489 261 0 0 chr5 135283394 135283574 -17253685 + G-rich Low_complexity Low_complexity 1 180 0 9 1617 555 249 0 0 chr5 135283586 135283838 -17253421 + G-rich Low_complexity Low_complexity 1 252 0 9 1617 537 263 0 0 chr5 135283896 135284248 -17253011 + G-rich Low_complexity Low_complexity 1 352 0 9 1617 249 232 0 0 chr5 135284260 135284329 -17252930 + G-rich Low_complexity Low_complexity 5 73 0 9 1617 197 111 0 0 chr5 135284693 135284720 -17252539 + MIRc SINE MIR 29 55 -213 9 1617 282 246 183 9 chr5 135285740 135285855 -17251404 - L1MB8 LINE L1 -5 6173 6039 9 1617 747 240 66 0 chr5 135285897 135286080 -17251179 - MTEa LTR MaLR -23 356 162 9 1617 305 302 0 107 chr5 135286073 135286085 -17251174 - ID_B1 SINE B4 0 224 193 9 1617 671 203 0 0 chr5 135286085 135286208 -17251051 - B1_Mur4 SINE Alu -6 144 22 9 1617 305 302 0 107 chr5 135286208 135286251 -17251008 - ID_B1 SINE B4 0 192 66 9 1617 366 267 30 0 chr5 135286397 135286483 -17250776 + B4A SINE B4 145 233 -59 9 1617 245 195 0 0 chr5 135286483 135286524 -17250735 + B3A SINE B2 1 41 -157 9 1617 416 247 11 0 chr5 135286525 135286614 -17250645 + B3 SINE B2 2 91 -125 9 1617 233 297 40 0 chr5 135286632 135286706 -17250553 + L1MEe LINE L1 173 249 -4605 9 1617 391 321 13 103 chr5 135286816 135286972 -17250287 + B4A SINE B4 8 149 -143 9 1617 497 304 80 13 chr5 135287005 135287155 -17250104 + RSINE1 SINE B4 2 161 -4 9 1617 722 263 46 0 chr5 135287196 135287348 -17249911 + B3A SINE B2 2 160 -38 9 1617 5342 129 76 24 chr5 135287354 135288232 -17249027 - RMER19B LTR ERVK 0 902 1 9 1617 708 122 156 4 chr5 135288249 135288397 -17248862 + ORR1B1 LTR MaLR 1 168 -191 9 1617 526 289 65 13 chr5 135288603 135288757 -17248502 - RSINE1 SINE B4 -1 164 3 9 1617 877 268 29 0 chr5 135288761 135288970 -17248289 - B4A SINE B4 -64 228 14 9 1617 472 198 32 21 chr5 135288963 135289056 -17248203 - PB1D10 SINE Alu -11 106 13 9 1617 1108 231 82 38 chr5 135289061 135289079 -17248180 + MLT-int LTR MaLR 1407 1423 -312 9 1617 516 275 46 0 chr5 135289079 135289210 -17248049 - B1F2 SINE Alu -8 141 5 9 1617 1108 231 82 38 chr5 135289210 135289483 -17247776 + MLT-int LTR MaLR 1424 1711 -24 9 1617 1063 289 0 57 chr5 135289484 135289785 -17247474 + B4 SINE B4 1 284 -8 9 1617 192 254 0 0 chr5 135289830 135289889 -17247370 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1617 1481 54 16 11 chr5 135289959 135290145 -17247114 + B2_Mm2 SINE B2 1 187 -8 9 1617 1083 213 23 5 chr5 135290347 135290564 -17246695 - Lx6 LINE L1 -26 7434 7214 9 1617 1577 62 18 0 chr5 135290567 135290919 -17246340 - ZP3AR Satellite Satellite -18 358 1 9 1617 469 290 21 28 chr5 135290934 135291076 -17246183 - B1F SINE Alu -8 141 1 9 1617 943 234 0 51 chr5 135291076 135291310 -17245949 - L1M2 LINE L1 -476 5824 5603 9 1617 1031 256 32 46 chr5 135291324 135291693 -17245566 + L1M4 LINE L1 4014 4377 -1769 9 1617 617 228 8 16 chr5 135291716 135291841 -17245418 + RSINE1 SINE B4 7 130 -35 9 1617 306 244 0 0 chr5 135291968 135292050 -17245209 + (CA)n Simple_repeat Simple_repeat 1 82 0 9 1617 460 280 8 60 chr5 135292124 135292257 -17245002 - RSINE1 SINE B4 -12 153 28 9 1617 576 229 22 37 chr5 135292531 135292667 -17244592 - B4 SINE B4 -153 139 6 9 1617 330 292 86 18 chr5 135292676 135292896 -17244363 + L1MEc LINE L1 1916 2150 -4250 9 1617 680 252 214 5 chr5 135292914 135293129 -17244130 - RMER15 LTR ERVL 0 575 316 9 1617 252 0 0 0 chr5 135293140 135293168 -17244091 + (C)n Simple_repeat Simple_repeat 1 28 0 9 1617 300 283 88 40 chr5 135293220 135293345 -17243914 - RMER15 LTR ERVL -444 131 1 9 1617 273 258 63 0 chr5 135293345 135293504 -17243755 + L1MEc LINE L1 2164 2337 -4063 9 1617 464 356 41 5 chr5 135293509 135293704 -17243555 + MER58C DNA MER1_type 2 203 -12 9 1617 460 339 58 83 chr5 135293721 135293829 -17243430 + L1MEc LINE L1 2349 2455 -3864 9 1617 783 241 0 24 chr5 135293829 135293995 -17243264 + RSINE1 SINE B4 4 165 0 1 1617 527 340 59 82 chr5 135293995 135294501 -17242758 + L1MEc LINE L1 2442 2948 -3371 9 1617 246 214 0 97 chr5 135294563 135294625 -17242634 + RMER15 LTR ERVL 5 60 -515 1 1617 1638 191 259 22 chr5 135294675 135295119 -17242140 + RMER15 LTR ERVL 27 575 0 1 1617 327 138 354 0 chr5 135295119 135295179 -17242080 + B1_Mur1 SINE Alu 37 120 -29 1 1617 235 288 0 0 chr5 135295133 135295192 -17242067 + B4 SINE B4 165 223 -69 1 1617 616 249 124 45 chr5 135295327 135295458 -17241801 + L1MEf LINE L1 1325 1476 -4766 1 1617 389 279 0 0 chr5 135295458 135295537 -17241722 + ID4 SINE ID 1 79 -4 1 1617 783 104 0 0 chr5 135295538 135295653 -17241606 + (GAAA)n Simple_repeat Simple_repeat 4 118 0 1 1617 616 249 124 45 chr5 135295653 135295784 -17241475 + L1MEf LINE L1 1477 1610 -4632 1 1617 1621 43 0 0 chr5 135295786 135295974 -17241285 + B2_Mm1a SINE B2 2 189 -4 1 1617 26 50 0 0 chr5 135296028 135296068 -17241191 + AT_rich Low_complexity Low_complexity 1 40 0 1 1617 265 339 0 40 chr5 135296084 135296210 -17241049 + L1MEf LINE L1 1631 1751 -4491 1 1617 381 316 76 48 chr5 135296216 135296500 -17240759 + B4 SINE B4 2 276 -16 1 1617 306 0 0 0 chr5 135296508 135296542 -17240717 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1617 269 120 0 39 chr5 135296716 135296768 -17240491 + GA-rich Low_complexity Low_complexity 4 53 0 1 1617 219 114 0 0 chr5 135296768 135296803 -17240456 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 1 1617 237 239 10 52 chr5 135296917 135296949 -17240310 + (TA)n Simple_repeat Simple_repeat 2 31 0 1 1617 2768 31 65 0 chr5 135296949 135297274 -17239985 + ORR1A1 LTR MaLR 1 346 0 1 1617 237 239 10 52 chr5 135297274 135297338 -17239921 + (TA)n Simple_repeat Simple_repeat 1 63 0 1 1617 321 26 0 0 chr5 135297424 135297462 -17239797 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1617 320 272 113 39 chr5 135297483 135297807 -17239452 + L1MEf LINE L1 2054 2412 -3734 1 1617 422 279 0 0 chr5 135297820 135297899 -17239360 + RSINE1 SINE B4 2 80 -85 1 1617 253 179 0 0 chr5 135297902 135297941 -17239318 + MurSatRep1 Unknown Unknown 240 278 -1859 1 1617 806 264 12 2 chr5 135297941 135298127 -17239132 - B3 SINE B2 -19 197 1 1 1617 547 243 48 27 chr5 135298159 135298345 -17238914 + Charlie5 DNA MER1_type 942 1131 -1493 1 1617 1756 283 56 26 chr5 135298296 135298348 -17238911 - Charlie5 DNA MER1_type -384 2240 2193 1 1617 388 288 65 58 chr5 135298348 135298503 -17238756 - RSINE1 SINE B4 -7 158 3 1 1617 1756 283 56 26 chr5 135298503 135299096 -17238163 - Charlie5 DNA MER1_type -432 2192 1576 1 1617 269 258 11 109 chr5 135299106 135299220 -17238039 - Charlie5 DNA MER1_type -1291 1333 1234 1 1617 1262 113 37 11 chr5 135299220 135299408 -17237851 - B2_Mm2 SINE B2 -1 194 2 1 1617 269 258 11 109 chr5 135299408 135299476 -17237783 - Charlie5 DNA MER1_type -1391 1233 1170 1 1617 288 220 0 0 chr5 135299475 135299525 -17237734 + ZP3AR Satellite Satellite 46 95 -117 1 1617 353 266 13 0 chr5 135299525 135299604 -17237655 + ID4 SINE ID 1 80 -3 1 1617 639 268 7 28 chr5 135299679 135299821 -17237438 + RSINE1 SINE B4 3 141 -24 1 1617 278 26 26 0 chr5 135299821 135299860 -17237399 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1617 433 262 9 9 chr5 135299864 135299972 -17237287 - B1F SINE Alu -34 115 8 1 1617 573 225 98 7 chr5 135299990 135300133 -17237126 + RSINE1 SINE B4 3 158 -7 1 1617 523 220 128 8 chr5 135300397 135300530 -17236729 + B1_Mur1 SINE Alu 1 149 0 1 1617 258 179 0 152 chr5 135300453 135300545 -17236714 + ID_B1 SINE B4 146 223 -1 1 1617 323 232 59 20 chr5 135300704 135300805 -17236454 + PB1D10 SINE Alu 1 105 -12 1 1617 225 65 0 0 chr5 135300825 135300856 -17236403 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 1 1617 649 270 76 69 chr5 135301013 135301303 -17235956 - B4A SINE B4 0 292 1 1 1617 286 250 33 0 chr5 135301364 135301424 -17235835 - RSINE1 SINE B4 0 165 104 1 1617 231 114 0 0 chr5 135301491 135301526 -17235733 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1617 283 288 25 12 chr5 135301676 135301757 -17235502 + B1F SINE Alu 68 149 0 1 1617 672 202 16 8 chr5 135301760 135301885 -17235374 + B1_Mur4 SINE Alu 4 129 -21 1 1617 269 109 18 0 chr5 135301896 135301951 -17235308 + (CAGAGA)n Simple_repeat Simple_repeat 4 59 0 1 1617 590 222 0 112 chr5 135302107 135302259 -17235000 + RSINE1 SINE B4 6 140 -25 1 1617 231 36 0 0 chr5 135302260 135302288 -17234971 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1617 237 300 178 18 chr5 135302426 135302589 -17234670 + Lx8 LINE L1 7186 7374 -99 1 1617 428 220 18 27 chr5 135302678 135302790 -17234469 + PB1D10 SINE Alu 1 111 -6 1 1617 579 137 20 31 chr5 135302848 135302946 -17234313 + PB1D7 SINE Alu 24 120 0 1 1617 324 0 0 0 chr5 135302995 135303031 -17234228 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1617 306 0 0 0 chr5 135303031 135303064 -17234195 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1617 633 209 27 13 chr5 135303072 135303222 -17234037 + RSINE1 SINE B4 6 157 -8 1 1617 1143 260 73 8 chr5 135303254 135303611 -17233648 + L1M4 LINE L1 2570 2949 -3197 1 1617 474 243 0 0 chr5 135303751 135303891 -17233368 + GA-rich Low_complexity Low_complexity 3 142 0 1 1617 186 164 36 18 chr5 135303917 135303973 -17233286 + GA-rich Low_complexity Low_complexity 5 61 0 1 1617 329 345 106 10 chr5 135303988 135304187 -17233072 + L1M2 LINE L1 5154 5371 -772 1 1617 216 0 0 0 chr5 135304257 135304281 -17232978 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1617 6133 15 0 0 chr5 135304336 135305022 -17232237 + L1Md_T LINE L1 4901 5586 -297 1 1617 8715 29 0 0 chr5 135305022 135306018 -17231241 + L1Md_T LINE L1 5587 6582 0 1 1617 399 303 41 34 chr5 135306220 135306367 -17230892 - MLT1A1 LTR MaLR 0 408 261 1 1617 212 245 0 20 chr5 135306405 135306455 -17230804 + GA-rich Low_complexity Low_complexity 4 52 0 1 1617 213 200 0 0 chr5 135306475 135306515 -17230744 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1617 583 313 0 33 chr5 135306533 135306685 -17230574 - B4 SINE B4 -4 288 142 1 1617 542 146 0 0 chr5 135306736 135306825 -17230434 + ZP3AR Satellite Satellite 42 130 -82 1 1617 234 0 0 0 chr5 135306849 135306875 -17230384 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1617 1220 43 0 0 chr5 135306877 135307018 -17230241 - B1_Mm SINE Alu -6 141 1 1 1617 535 200 32 0 chr5 135307168 135307263 -17229996 + B1F1 SINE Alu 4 101 -48 1 1617 232 215 29 44 chr5 135307205 135307273 -17229986 + RLTR25B LTR ERVK 442 508 -520 1 1617 243 0 0 0 chr5 135307273 135307300 -17229959 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1617 235 130 20 61 chr5 135307316 135307365 -17229894 + RSINE1 SINE B4 87 133 -32 1 1617 342 0 0 0 chr5 135307947 135307985 -17229274 + (TATG)n Simple_repeat Simple_repeat 4 41 0 1 1617 400 167 82 12 chr5 135307996 135308081 -17229178 - PB1D9 SINE Alu -27 93 3 1 1617 305 189 0 119 chr5 135308101 135308185 -17229074 + ID_B1 SINE B4 80 153 -71 1 1617 579 235 0 9 chr5 135308114 135308230 -17229029 + PB1D7 SINE Alu 6 120 0 1 1617 316 237 58 58 chr5 135308411 135308514 -17228745 + B1F SINE Alu 37 139 -10 1 1617 825 224 24 28 chr5 135308519 135308730 -17228529 + ID_B1 SINE B4 2 211 -13 1 1617 1175 44 0 0 chr5 135309625 135309761 -17227498 - B1_Mus1 SINE Alu -12 136 1 1 1617 598 168 11 0 chr5 135310185 135310280 -17226979 + RSINE1 SINE B4 3 98 -67 1 1617 279 0 0 0 chr5 135310289 135310320 -17226939 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1617 432 0 0 0 chr5 135310320 135310367 -17226892 + (GA)n Simple_repeat Simple_repeat 2 49 0 1 1617 301 291 37 135 chr5 135310427 135310502 -17226757 + B1F2 SINE Alu 1 78 -71 1 1617 670 219 44 0 chr5 135310502 135310639 -17226620 + RSINE1 SINE B4 4 146 -19 1 1617 301 291 37 135 chr5 135310639 135310726 -17226533 + B1F2 SINE Alu 79 147 -2 1 1617 779 250 6 6 chr5 135310733 135310894 -17226365 + RSINE1 SINE B4 5 165 0 1 1617 260 292 33 91 chr5 135310854 135311095 -17226164 - RLTR21 LTR ERVK -273 1299 1073 1 1617 273 290 9 83 chr5 135311114 135311223 -17226036 + ZP3AR Satellite Satellite 13 113 -99 1 1617 313 258 75 11 chr5 135311370 135311464 -17225795 + MLT1K LTR MaLR 477 576 -19 1 1617 321 273 76 103 chr5 135311777 135311798 -17225461 - B2_Mm2 SINE B2 -14 181 161 1 1617 261 83 0 0 chr5 135311798 135311834 -17225425 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1617 321 273 76 103 chr5 135311834 135311850 -17225409 - B2_Mm2 SINE B2 -35 160 148 1 1617 870 132 353 6 chr5 135311850 135312017 -17225242 - URR1B DNA MER1_type 0 225 1 1 1617 557 236 103 35 chr5 135312017 135312162 -17225097 - B3A SINE B2 -41 157 3 1 1617 2129 106 43 28 chr5 135312227 135312487 -17224772 + ORR1A2 LTR MaLR 1 269 -58 1 1617 4119 128 44 21 chr5 135312487 135313163 -17224096 + RLTR17 LTR ERVK 1 692 0 1 1617 2129 106 43 28 chr5 135313163 135313224 -17224035 + ORR1A2 LTR MaLR 270 327 0 1 1617 11377 124 62 14 chr5 135313224 135315097 -17222162 + ORR1A2-int LTR MaLR 1 1963 0 1 1617 2255 93 29 0 chr5 135315097 135315407 -17221852 + ORR1A2 LTR MaLR 1 319 -8 1 1617 633 230 0 22 chr5 135315409 135315547 -17221712 - MTD LTR MaLR -21 398 264 1 1617 694 282 79 51 chr5 135315541 135315852 -17221407 - MTD LTR MaLR -86 321 3 1 1617 343 138 15 44 chr5 135315874 135315942 -17221317 + MTEb LTR MaLR 310 375 -4 1 1617 498 316 79 47 chr5 135315988 135316305 -17220954 + ORR1E LTR MaLR 1 322 -72 1 1617 1484 258 18 42 chr5 135316340 135316725 -17220534 - MTE2a LTR MaLR -2 377 2 1 1617 268 262 16 16 chr5 135316744 135316806 -17220453 - tRNA-Ala-GCY_ tRNA tRNA -8 67 6 1 1617 351 0 0 0 chr5 135316958 135316997 -17220262 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1617 366 208 138 28 chr5 135316998 135317107 -17220152 - B1_Mur1 SINE Alu -15 134 14 1 1617 539 304 26 35 chr5 135317195 135317427 -17219832 + RMER15 LTR ERVL 273 502 -73 1 1617 872 252 20 43 chr5 135317439 135317692 -17219567 + MTD LTR MaLR 21 267 -152 1 1617 676 211 25 44 chr5 135317737 135317896 -17219363 + MTD LTR MaLR 264 419 0 1 1617 970 166 117 20 chr5 135318220 135318417 -17218842 + ID_B1 SINE B4 2 217 -7 1 1617 273 242 163 64 chr5 135318630 135318771 -17218488 + MLT1A1 LTR MaLR 246 400 -8 1 1617 231 329 25 25 chr5 135319831 135319912 -17217347 - ID4 SINE ID -2 81 1 1 1617 1569 58 12 15 chr5 135319871 135320402 -17216857 - ZP3AR Satellite Satellite -24 529 1 1 1617 631 240 47 10 chr5 135320430 135320605 -17216654 - Lx4B LINE L1 0 7058 6868 1 1617 1224 48 7 0 chr5 135320679 135320826 -17216433 - B1_Mus1 SINE Alu 0 148 1 1 1617 233 258 115 67 chr5 135320830 135320854 -17216405 - PB1D10 SINE Alu 0 117 97 1 1617 1359 110 81 5 chr5 135320854 135321064 -17216195 + URR1A DNA MER1_type 1 226 0 1 1617 233 258 115 67 chr5 135321064 135321143 -17216116 - PB1D10 SINE Alu -21 96 9 1 1617 339 214 0 28 chr5 135321174 135321246 -17216013 - ID4 SINE ID -13 70 1 1 1617 785 297 38 9 chr5 135321679 135321890 -17215369 - ID_B1 SINE B4 -1 223 7 1 1617 774 197 0 7 chr5 135321914 135322052 -17215207 - ID_B1 SINE B4 -4 220 84 1 1617 184 271 126 23 chr5 135322082 135322169 -17215090 - MIRb SINE MIR -119 149 54 1 1617 247 264 126 0 chr5 135322311 135322398 -17214861 - B1_Mur4 SINE Alu -18 132 35 1 1617 506 296 88 6 chr5 135322325 135322495 -17214764 - ID_B1 SINE B4 -37 187 4 1 1617 433 240 39 0 chr5 135323203 135323307 -17213952 - ID_B1 SINE B4 -14 210 103 1 1617 448 287 7 53 chr5 135323542 135323693 -17213566 + ID_B1 SINE B4 80 223 -1 1 1617 840 132 36 42 chr5 135323697 135323863 -17213396 + ZP3AR Satellite Satellite 46 210 -2 1 1617 262 303 2 0 chr5 135323818 135323884 -17213375 + ID4 SINE ID 14 80 -72 1 1617 445 347 68 9 chr5 135324008 135324229 -17213030 - MIR SINE MIR -9 253 20 1 1617 233 318 59 107 chr5 135325335 135325364 -17211895 + B4 SINE B4 63 220 -69 1 1617 555 270 22 0 chr5 135325364 135325501 -17211758 + B1F SINE Alu 4 143 -6 1 1617 260 351 80 62 chr5 135325541 135325624 -17211635 - MER21B LTR ERV1 -403 460 378 1 1617 258 32 0 0 chr5 135325624 135325655 -17211604 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1617 260 351 80 62 chr5 135325655 135325847 -17211412 - MER21B LTR ERV1 -486 377 180 1 1617 446 286 77 60 chr5 135325878 135326255 -17211004 - RMER15 LTR ERVL -51 524 24 1 1617 235 300 112 0 chr5 135326267 135326347 -17210912 - MER21B LTR ERV1 -679 184 96 1 1617 863 292 75 30 chr5 135326343 135326611 -17210648 - B4 SINE B4 -12 280 1 1 1617 562 305 14 19 chr5 135326755 135326969 -17210290 + L1ME2 LINE L1 5670 5882 -282 1 1617 322 221 89 2 chr5 135327019 135327120 -17210139 + PB1D7 SINE Alu 6 114 -6 1 1617 838 244 49 36 chr5 135327268 135327493 -17209766 + B4 SINE B4 2 229 -63 1 1617 876 244 6 0 chr5 135327493 135327673 -17209586 + B3A SINE B2 2 182 -16 1 1617 713 263 6 11 chr5 135327731 135327912 -17209347 + B3A SINE B2 4 183 -15 1 1617 333 0 0 0 chr5 135327964 135328001 -17209258 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1 1617 648 171 41 48 chr5 135328004 135328151 -17209108 + B1_Mus1 SINE Alu 1 146 -2 1 1617 504 0 0 0 chr5 135328213 135328269 -17208990 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1617 504 258 47 76 chr5 135328417 135328589 -17208670 + RMER15 LTR ERVL 3 169 -406 1 1617 1070 240 29 4 chr5 135328574 135328817 -17208442 + RMER15 LTR ERVL 275 523 -52 1 1617 226 286 65 19 chr5 135329405 135329512 -17207747 + L1M4 LINE L1 836 947 -5595 1 1617 705 24 0 0 chr5 135329683 135329766 -17207493 + (GA)n Simple_repeat Simple_repeat 2 84 0 1 1617 244 250 21 0 chr5 135329820 135329868 -17207391 + B1_Mus1 SINE Alu 1 49 -99 1 1617 2434 153 30 33 chr5 135330148 135330607 -17206652 - RLTR28 LTR ERVL -45 479 22 1 1617 723 98 98 0 chr5 135331062 135331174 -17206085 + ZP3AR Satellite Satellite 26 148 -64 1 1617 414 233 0 0 chr5 135331174 135331247 -17206012 + ID4_ SINE ID 1 73 -10 1 1617 879 246 3 8 chr5 135331543 135331761 -17205498 + B3A SINE B2 4 216 0 1 1617 845 259 87 117 chr5 135332211 135332578 -17204681 + MTE2a LTR MaLR 1 356 -23 1 1617 2223 145 85 32 chr5 135332780 135333180 -17204079 + MTC LTR MaLR 1 421 0 1 1617 228 314 38 29 chr5 135333379 135333484 -17203775 - ORR1E LTR MaLR -253 106 1 1 1617 275 246 16 0 chr5 135333686 135333747 -17203512 - B4 SINE B4 -4 288 227 1 1617 645 192 38 8 chr5 135333766 135333897 -17203362 - RSINE1 SINE B4 -28 137 3 1 1617 736 281 17 39 chr5 135333913 135334143 -17203116 - B4 SINE B4 -66 226 2 1 1617 309 176 118 0 chr5 135334688 135334756 -17202503 + PB1D9 SINE Alu 9 84 -36 1 1617 622 211 0 0 chr5 135334971 135335085 -17202174 - B1_Mur4 SINE Alu -9 141 28 1 1617 777 233 102 58 chr5 135335090 135335295 -17201964 - B4 SINE B4 -69 223 10 1 1617 579 288 104 31 chr5 135335642 135335907 -17201352 - B4A SINE B4 -1 291 1 1 1617 1312 207 1 33 chr5 135336343 135336663 -17200596 + ZP3AR Satellite Satellite 1 309 -3 1 1617 213 345 0 22 chr5 135337627 135337719 -17199540 + MIR3 SINE MIR 83 172 -36 1 1617 183 100 0 0 chr5 135337922 135337952 -17199307 + (CACCC)n Simple_repeat Simple_repeat 3 32 0 1 1617 424 264 9 54 chr5 135338646 135338758 -17198501 + B1_Mur2 SINE Alu 8 114 -35 1 1617 326 173 37 74 chr5 135338745 135338826 -17198433 + PB1D7 SINE Alu 43 120 0 1 1617 923 170 110 43 chr5 135338841 135339050 -17198209 + ID_B1 SINE B4 2 224 0 1 1617 285 29 0 0 chr5 135339211 135339245 -17198014 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1617 450 0 0 0 chr5 135339245 135339294 -17197965 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1617 615 286 11 43 chr5 135339426 135339612 -17197647 + B3A SINE B2 3 182 -16 1 1617 643 171 0 18 chr5 135339629 135339916 -17197343 + (CA)n Simple_repeat Simple_repeat 1 281 0 1 1617 349 130 19 0 chr5 135339916 135339970 -17197289 + HAL1-3A_ME LINE L1 1976 2030 -828 1 1617 671 276 35 16 chr5 135339975 135340177 -17197082 + B3A SINE B2 2 202 -14 1 1617 189 0 0 0 chr5 135340200 135340221 -17197038 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1617 325 302 0 0 chr5 135340239 135340325 -17196934 + PB1D10 SINE Alu 2 87 -30 1 1617 359 273 13 0 chr5 135340382 135340459 -17196800 - ID4 SINE ID -5 78 1 1 1617 336 191 67 67 chr5 135340459 135340549 -17196710 - ZP3AR Satellite Satellite -117 95 6 1 1617 334 336 0 49 chr5 135340514 135340636 -17196623 - PB1D10 SINE Alu 0 117 2 1 1617 362 289 16 66 chr5 135340642 135340764 -17196495 - PB1D7 SINE Alu -31 118 3 1 1617 195 42 0 0 chr5 135342316 135342340 -17194919 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 1 1617 24 53 0 0 chr5 135343117 135343155 -17194104 + AT_rich Low_complexity Low_complexity 1 38 0 1 1617 266 82 41 0 chr5 135343212 135343261 -17193998 + (CAGAGA)n Simple_repeat Simple_repeat 4 54 0 1 1617 504 279 14 35 chr5 135343263 135343408 -17193851 - RSINE1 SINE B4 -21 144 3 1 1617 379 284 101 101 chr5 135344061 135344339 -17192920 - B4 SINE B4 -13 279 2 1 1617 547 268 115 11 chr5 135344349 135344523 -17192736 - ID_B1 SINE B4 -8 216 25 1 1617 23 0 0 0 chr5 135344853 135344876 -17192383 + GC_rich Low_complexity Low_complexity 1 23 0 1 1617 698 191 66 0 chr5 135344879 135345015 -17192244 + B1_Mur3 SINE Alu 5 149 0 1 1617 696 250 71 36 chr5 135345043 135345255 -17192004 + B4A SINE B4 2 221 -71 1 1617 690 320 68 22 chr5 135345255 135345533 -17191726 + B4A SINE B4 1 291 -1 1 1617 396 55 0 0 chr5 135345547 135345602 -17191657 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1617 236 137 78 0 chr5 135345606 135345657 -17191602 + (TCTG)n Simple_repeat Simple_repeat 1 55 0 1 1617 430 293 91 8 chr5 135346017 135346171 -17191088 - ID_B1 SINE B4 -45 247 78 1 1617 233 214 0 0 chr5 135346175 135346217 -17191042 - L1_Mur3 LINE L1 -482 5398 5357 1 1617 264 287 217 0 chr5 135346287 135346444 -17190815 + L1M4 LINE L1 4379 4569 -1577 1 1617 954 0 0 0 chr5 135346517 135346623 -17190636 + (GAA)n Simple_repeat Simple_repeat 1 106 0 1 1617 415 294 60 60 chr5 135346708 135346925 -17190334 + L1M4 LINE L1 4745 4961 -1185 1 1617 508 315 16 26 chr5 135346951 135347140 -17190119 + ID_B1 SINE B4 24 210 -14 1 1617 660 238 55 70 chr5 135347201 135347246 -17190013 - B3A SINE B2 0 198 166 1 1617 231 103 0 0 chr5 135347246 135347285 -17189974 + (TATG)n Simple_repeat Simple_repeat 4 42 0 1 1617 660 238 55 70 chr5 135347285 135347438 -17189821 - B3A SINE B2 -33 165 3 1 1617 1054 238 73 15 chr5 135347637 135347897 -17189362 - B4A SINE B4 -16 276 2 1 1617 782 245 15 46 chr5 135347956 135348153 -17189106 + B3A SINE B2 3 193 -5 1 1617 426 39 0 0 chr5 135348156 135348208 -17189051 + (GA)n Simple_repeat Simple_repeat 1 52 0 1 1617 556 211 0 0 chr5 135349473 135349577 -17187682 + ID_B1 SINE B4 114 217 -7 1 1617 607 226 22 8 chr5 135349601 135349735 -17187524 + ID_B1 SINE B4 82 217 -7 1 1617 387 0 0 0 chr5 135349747 135349790 -17187469 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1617 374 232 211 0 chr5 135351094 135351189 -17186070 + PB1D7 SINE Alu 1 115 -5 1 1617 616 275 117 33 chr5 135351225 135351439 -17185820 + B4A SINE B4 1 232 -60 1 1617 665 147 0 0 chr5 135351453 135351555 -17185704 + B1_Mur4 SINE Alu 6 107 -43 1 1617 367 283 98 67 chr5 135351457 135351557 -17185702 + B4A SINE B4 94 197 -95 1 1617 456 19 0 0 chr5 135351557 135351610 -17185649 + (TAA)n Simple_repeat Simple_repeat 2 54 0 1 1617 1222 177 28 14 chr5 135351617 135351829 -17185430 + B3 SINE B2 2 216 0 1 1617 367 283 98 67 chr5 135351829 135351878 -17185381 + B4A SINE B4 218 266 -26 1 1617 345 24 0 0 chr5 135351878 135351920 -17185339 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1617 367 283 98 67 chr5 135351920 135351954 -17185305 + B4A SINE B4 267 290 -2 1 1617 465 158 0 0 chr5 135352120 135352202 -17185057 + GA-rich Low_complexity Low_complexity 3 84 0 1 1617 654 238 61 50 chr5 135352477 135352658 -17184601 + ID_B1 SINE B4 2 184 -40 1 1617 830 255 15 15 chr5 135352928 135353131 -17184128 + ID_B1 SINE B4 3 205 -19 1 1617 405 0 0 0 chr5 135353149 135353194 -17184065 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1617 563 99 0 21 chr5 135353194 135353286 -17183973 + (CATA)n Simple_repeat Simple_repeat 2 92 0 1 1617 712 204 14 77 chr5 135353404 135353611 -17183648 + B2_Mm2 SINE B2 1 194 -1 1 1617 699 228 52 188 chr5 135353853 135354177 -17183082 + B4 SINE B4 1 280 -12 1 1617 215 304 25 12 chr5 135354315 135354395 -17182864 - L2b LINE L2 -13 3362 3282 1 1617 1123 222 35 42 chr5 135354506 135354793 -17182466 - B4 SINE B4 -7 285 1 1 1617 595 181 0 0 chr5 135355354 135355459 -17181800 - ID_B1 SINE B4 -2 222 118 1 1617 296 217 0 92 chr5 135355477 135355553 -17181706 - B4 SINE B4 -1 291 223 1 1617 256 299 143 10 chr5 135355578 135355676 -17181583 - ID_B1 SINE B4 -113 111 1 1 1617 477 291 69 56 chr5 135356595 135356674 -17180585 + RSINE1 SINE B4 4 92 -73 1 1617 2822 124 162 35 chr5 135356674 135356863 -17180396 - RMER4B LTR ERVK -2 583 327 1 1617 780 65 0 0 chr5 135356863 135356970 -17180289 + (TCC)n Simple_repeat Simple_repeat 3 109 0 1 1617 2822 124 162 35 chr5 135356970 135357270 -17179989 - RMER4B LTR ERVK -259 326 43 1 1617 405 0 0 0 chr5 135357270 135357315 -17179944 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1617 2822 124 162 35 chr5 135357315 135357341 -17179918 - RMER4B LTR ERVK -543 42 3 1 1617 477 291 69 56 chr5 135357341 135357421 -17179838 + RSINE1 SINE B4 93 165 0 1 1617 653 89 24 8 chr5 135357422 135357547 -17179712 + (GA)n Simple_repeat Simple_repeat 2 128 0 1 1617 646 226 13 27 chr5 135357572 135357722 -17179537 + B1_Mur2 SINE Alu 1 148 -1 1 1617 25 31 0 0 chr5 135357722 135357754 -17179505 + AT_rich Low_complexity Low_complexity 1 32 0 1 1617 833 172 13 65 chr5 135357758 135357913 -17179346 + B1_Mur1 SINE Alu 2 148 -1 1 1617 581 270 143 0 chr5 135357929 135358118 -17179141 + B3 SINE B2 1 216 0 1 1617 286 250 0 16 chr5 135358177 135358238 -17179021 + ID_B1 SINE B4 156 215 -9 1 1617 282 264 171 11 chr5 135358413 135358501 -17178758 + PB1D10 SINE Alu 1 102 -15 1 1617 217 258 15 46 chr5 135359442 135359507 -17177752 + MER5A DNA MER1_type 10 72 -117 1 1617 375 222 160 10 chr5 135359515 135359615 -17177644 + PB1D10 SINE Alu 2 116 -1 1 1617 813 274 70 9 chr5 135359620 135359836 -17177423 + B4A SINE B4 1 230 -62 1 1617 400 284 170 18 chr5 135359836 135360001 -17177258 + B3A SINE B2 2 191 -7 1 1617 270 326 11 0 chr5 135360094 135360186 -17177073 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1617 1814 154 70 70 chr5 135360402 135360785 -17176474 + ORR1C2 LTR MaLR 2 384 0 1 1617 268 267 0 0 chr5 135360878 135360953 -17176306 - Lx9 LINE L1 -171 7473 7399 1 1617 918 108 22 0 chr5 135361324 135361463 -17175796 - B1_Mus2 SINE Alu 0 147 6 1 1617 234 0 0 0 chr5 135361471 135361497 -17175762 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1617 561 282 35 82 chr5 135361513 135361683 -17175576 + B4 SINE B4 109 270 -22 1 1617 444 104 0 0 chr5 135361712 135361779 -17175480 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1617 1367 34 0 17 chr5 135361784 135361962 -17175297 + (GGGAGA)n Simple_repeat Simple_repeat 6 180 0 1 1617 338 255 170 0 chr5 135362230 135362324 -17174935 + PB1D10 SINE Alu 1 110 -7 1 1617 315 71 0 0 chr5 135362325 135362367 -17174892 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1 1617 599 208 61 8 chr5 135362477 135362608 -17174651 - ZP3AR Satellite Satellite -59 153 16 1 1617 259 298 105 0 chr5 135362591 135362705 -17174554 - ID_B1 SINE B4 -8 216 91 1 1617 250 207 122 89 chr5 135363045 135363135 -17174124 + PB1D10 SINE Alu 24 116 -1 1 1617 428 202 34 0 chr5 135364095 135364184 -17173075 + B1F SINE Alu 22 113 -36 1 1617 413 168 8 22 chr5 135364196 135364330 -17172929 + GA-rich Low_complexity Low_complexity 1 132 0 1 1617 208 254 191 0 chr5 135364457 135364567 -17172692 - L2b LINE L2 0 3375 3245 1 1617 591 216 263 23 chr5 135364881 135365056 -17172203 - ID_B1 SINE B4 -7 217 1 1 1617 272 309 33 152 chr5 135365093 135365337 -17171922 + B3 SINE B2 2 216 0 1 1617 358 294 29 19 chr5 135365496 135365600 -17171659 + PB1D7 SINE Alu 16 120 0 1 1617 266 272 132 28 chr5 135365610 135365716 -17171543 + PB1D7 SINE Alu 9 125 -2 1 1617 727 231 31 12 chr5 135365717 135365795 -17171464 + ID SINE ID 2 82 -142 1 1617 385 273 36 18 chr5 135365795 135365907 -17171352 + PB1D10 SINE Alu 3 116 -1 1 1617 632 259 18 12 chr5 135365939 135366107 -17171152 + B3 SINE B2 40 208 -8 1 1617 528 197 28 7 chr5 135366145 135366288 -17170971 + G-rich Low_complexity Low_complexity 5 150 0 1 1617 228 146 24 0 chr5 135366755 135366796 -17170463 + C-rich Low_complexity Low_complexity 1 42 0 1 1617 408 273 244 9 chr5 135366972 135366995 -17170264 - ID_B1 SINE B4 -14 278 227 1 1617 411 213 52 21 chr5 135366995 135367107 -17170152 - PB1D10 SINE Alu -15 134 28 1 1617 408 273 244 9 chr5 135367107 135367195 -17170064 - ID_B1 SINE B4 -14 226 17 1 1617 779 223 105 15 chr5 135367769 135367969 -17169290 + ID_B1 SINE B4 2 219 -5 1 1617 416 284 0 0 chr5 135367971 135368073 -17169186 - PB1D10 SINE Alu -15 102 1 1 1617 247 295 113 33 chr5 135368181 135368308 -17168951 + MIRc SINE MIR 38 169 -99 1 1617 1254 48 0 0 chr5 135368350 135368497 -17168762 - B1_Mus1 SINE Alu 0 148 2 1 1617 229 268 26 7 chr5 135368517 135368641 -17168618 + B1F SINE Alu 3 132 -17 1 1617 288 0 0 0 chr5 135368695 135368727 -17168532 + (TTTTA)n Simple_repeat Simple_repeat 5 36 0 1 1617 1132 168 34 10 chr5 135368727 135368922 -17168337 - B3 SINE B2 -15 201 2 1 1617 483 63 0 0 chr5 135369512 135369575 -17167684 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1617 649 260 130 20 chr5 135369722 135369969 -17167290 + Lx8 LINE L1 7002 7275 -198 1 1617 252 0 0 0 chr5 135369998 135370026 -17167233 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1617 763 172 0 15 chr5 135370310 135370446 -17166813 + RSINE1 SINE B4 3 136 -29 1 1617 384 22 0 0 chr5 135370456 135370501 -17166758 + (CATA)n Simple_repeat Simple_repeat 4 48 0 1 1617 341 144 89 78 chr5 135370603 135370693 -17166566 + ID_B1 SINE B4 133 223 -1 1 1617 881 227 62 0 chr5 135371764 135371940 -17165319 + ID_B1 SINE B4 5 191 -33 1 1617 390 91 0 0 chr5 135371943 135371998 -17165261 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1617 581 250 18 55 chr5 135372206 135372371 -17164888 + RSINE1 SINE B4 1 159 -6 1 1617 1087 172 0 0 chr5 135372396 135372576 -17164683 - B3 SINE B2 -35 181 2 1 1617 261 316 78 89 chr5 135373951 135374142 -17163117 - MIRm SINE MIR -66 210 22 1 1617 547 299 99 8 chr5 135374148 135374401 -17162858 + B4 SINE B4 1 276 -16 1 1617 229 316 41 58 chr5 135374495 135374616 -17162643 - RMER15 LTR ERVL -76 499 381 1 1617 350 241 63 27 chr5 135375208 135375319 -17161940 + PB1D7 SINE Alu 1 115 -5 1 1617 532 171 265 0 chr5 135375321 135375438 -17161821 + B1_Mur1 SINE Alu 1 148 -1 1 1617 344 261 157 50 chr5 135375481 135375602 -17161657 + B4A SINE B4 159 292 0 1 1617 309 26 0 0 chr5 135376170 135376208 -17161051 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1617 465 296 0 49 chr5 135376516 135376701 -17160558 + (TGGA)n Simple_repeat Simple_repeat 2 177 0 1 1617 540 182 11 29 chr5 135376702 135376877 -17160382 + GA-rich Low_complexity Low_complexity 3 174 0 1 1617 225 313 125 27 chr5 135377108 135377324 -17159935 + MIRm SINE MIR 22 251 -11 1 1617 735 203 14 7 chr5 135377937 135378081 -17159178 + B1_Mur4 SINE Alu 1 145 -5 1 1617 667 224 0 77 chr5 135378102 135378257 -17159002 + B3A SINE B2 1 143 -55 1 1617 387 60 0 0 chr5 135378260 135378310 -17158949 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1617 297 0 0 0 chr5 135379008 135379041 -17158218 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 1 1617 826 209 0 13 chr5 135379044 135379194 -17158065 - B1_Mur2 SINE Alu 0 149 2 1 1617 480 114 101 0 chr5 135379212 135379291 -17157968 - B1_Mus1 SINE Alu -24 124 38 1 1617 984 116 146 0 chr5 135379292 135379456 -17157803 - B2_Mm2 SINE B2 -7 188 1 1 1617 845 274 15 0 chr5 135379476 135379673 -17157586 + ID_B1 SINE B4 6 205 -19 1 1617 416 287 26 26 chr5 135379691 135379845 -17157414 + RSINE1 SINE B4 12 165 0 1 1617 21 36 0 0 chr5 135379853 135379881 -17157378 + AT_rich Low_complexity Low_complexity 1 28 0 1 1617 284 234 15 15 chr5 135380369 135380434 -17156825 + ID_B1 SINE B4 136 200 -24 1 1617 342 180 0 16 chr5 135380377 135380439 -17156820 + B1F SINE Alu 67 127 -22 1 1617 615 149 0 0 chr5 135380487 135380594 -17156665 + (GGA)n Simple_repeat Simple_repeat 1 107 0 1 1617 256 241 11 98 chr5 135380594 135380686 -17156573 + B4A SINE B4 27 110 -182 1 1617 207 115 77 0 chr5 135381790 135381842 -17155417 + GA-rich Low_complexity Low_complexity 6 61 0 1 1617 222 271 0 17 chr5 135381865 135381925 -17155334 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1617 216 266 31 0 chr5 135381931 135381995 -17155264 + GA-rich Low_complexity Low_complexity 2 67 0 1 1617 542 161 11 0 chr5 135382002 135382095 -17155164 + RSINE1 SINE B4 4 97 -68 1 1617 701 201 30 7 chr5 135382157 135382292 -17154967 + B1_Mur2 SINE Alu 2 139 -10 1 1617 303 28 0 0 chr5 135382292 135382328 -17154931 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1617 231 189 83 42 chr5 135383654 135383726 -17153533 - B2_Mm1a SINE B2 -14 179 105 1 1617 768 143 48 0 chr5 135383684 135383810 -17153449 + B1_Mus2 SINE Alu 16 147 0 1 1617 264 130 0 0 chr5 135383812 135383858 -17153401 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1617 336 248 19 67 chr5 135383904 135384008 -17153251 + RSINE1 SINE B4 15 113 -52 1 1617 188 35 35 0 chr5 135384062 135384091 -17153168 + (GAAAA)n Simple_repeat Simple_repeat 5 34 0 1 1617 458 290 7 14 chr5 135384106 135384246 -17153013 + RSINE1 SINE B4 25 163 -2 1 1617 201 147 0 0 chr5 135384269 135384303 -17152956 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 1 1617 236 325 40 24 chr5 135384374 135384500 -17152759 + L1M5 LINE L1 5352 5479 -761 1 1617 345 169 0 15 chr5 135384654 135384720 -17152539 + ZP3AR Satellite Satellite 42 106 -106 1 1617 413 291 20 41 chr5 135385037 135385234 -17152025 + L1VL4 LINE L1 365 557 -5745 1 1617 1908 132 13 6 chr5 135385226 135385538 -17151721 + Lx2B LINE L1 6369 6682 -318 1 1617 1057 93 7 0 chr5 135385546 135385696 -17151563 + B2_Mm2 SINE B2 15 165 -30 1 1617 186 43 0 0 chr5 135385696 135385719 -17151540 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 1617 548 246 20 72 chr5 135385761 135385914 -17151345 + ID_B1 SINE B4 3 147 -77 1 1617 318 188 0 124 chr5 135385939 135386036 -17151223 + ID_B1 SINE B4 121 205 -19 1 1617 439 157 38 38 chr5 135386144 135386250 -17151009 + B2_Mm2 SINE B2 88 193 -2 1 1617 363 80 0 0 chr5 135386244 135386294 -17150965 + ORR1A4 LTR MaLR 272 321 -8 1 1617 624 208 0 15 chr5 135386328 135386460 -17150799 - URR1B DNA MER1_type -8 217 88 1 1617 771 169 81 7 chr5 135386593 135386742 -17150517 + MTC LTR MaLR 262 421 0 1 1617 1359 22 20 15 chr5 135386761 135387170 -17150089 + (CA)n Simple_repeat Simple_repeat 1 411 0 1 1617 949 83 11 156 chr5 135388226 135388412 -17148847 + B2_Mm1a SINE B2 2 160 -33 1 1617 567 0 0 0 chr5 135388412 135388475 -17148784 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 1 1617 189 0 0 0 chr5 135388489 135388510 -17148749 + (TG)n Simple_repeat Simple_repeat 1 21 0 1 1617 507 151 5 58 chr5 135388873 135389063 -17148196 + CT-rich Low_complexity Low_complexity 1 180 0 1 1617 241 26 26 26 chr5 135389074 135389113 -17148146 + (TCC)n Simple_repeat Simple_repeat 1 39 0 1 1617 757 196 7 0 chr5 135389113 135389251 -17148008 - B1_Mus1 SINE Alu 0 148 10 1 1617 231 88 0 0 chr5 135389404 135389438 -17147821 + (TCC)n Simple_repeat Simple_repeat 2 35 0 1 1617 848 242 43 17 chr5 135389470 135389701 -17147558 + B4A SINE B4 41 277 -15 1 1617 304 256 79 33 chr5 135390057 135390254 -17147005 - RMER15 LTR ERVL -43 532 299 1 1617 554 136 2 1 chr5 135390427 135390532 -17146727 + B1_Mus1 SINE Alu 2 107 -13 1 1617 233 308 15 0 chr5 135391540 135391605 -17145654 + (CGTG)n Simple_repeat Simple_repeat 4 69 0 1 1617 560 318 7 0 chr5 135391612 135391766 -17145493 - B4 SINE B4 -89 203 49 1 1617 580 262 13 27 chr5 135392229 135392378 -17144881 - B1_Mus1 SINE Alu 0 148 2 1 1617 3169 192 68 2 chr5 135392461 135393054 -17144205 - Lx5 LINE L1 0 7050 6419 1 1617 896 264 140 13 chr5 135393054 135393368 -17143891 - ORR1D1 LTR MaLR -13 361 8 1 1617 226 212 0 96 chr5 135393380 135393453 -17143806 + B1_Mur2 SINE Alu 84 149 0 1 1617 224 325 0 0 chr5 135393510 135393573 -17143686 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1617 1609 142 271 0 chr5 135393573 135393875 -17143384 - ORR1C2 LTR MaLR 0 384 1 1 1617 224 325 0 0 chr5 135393875 135393891 -17143368 + (CA)n Simple_repeat Simple_repeat 2 17 0 1 1617 226 250 82 148 chr5 135393948 135394070 -17143189 - MLT1J2 LTR MaLR -29 419 306 1 1617 344 290 45 58 chr5 135394568 135394722 -17142537 + ID_B1 SINE B4 6 157 -67 1 1617 1408 99 5 0 chr5 135394751 135394943 -17142316 + B2_Mm1a SINE B2 1 193 0 1 1617 3260 125 21 6 chr5 135396476 135396992 -17140267 - RLTR28 LTR ERVL 0 524 1 1 1617 402 244 48 24 chr5 135397078 135397204 -17140055 - B4 SINE B4 -18 274 146 1 1618 232 239 70 0 chr5 135397406 135397477 -17139782 + MTEb LTR MaLR 246 321 -58 1 1618 281 333 0 0 chr5 135397825 135397897 -17139362 + B4 SINE B4 2 73 -219 1 1618 402 147 0 0 chr5 135397899 135397967 -17139292 + (TAA)n Simple_repeat Simple_repeat 2 69 0 1 1618 384 307 182 43 chr5 135397967 135398081 -17139178 + B4 SINE B4 80 211 -81 1 1618 396 0 0 0 chr5 135398081 135398125 -17139134 + (TAG)n Simple_repeat Simple_repeat 1 44 0 1 1618 384 307 182 43 chr5 135398125 135398197 -17139062 + B4 SINE B4 212 291 -1 1 1618 234 241 0 0 chr5 135398197 135398251 -17139008 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1618 390 274 37 28 chr5 135398271 135398380 -17138879 + PB1D10 SINE Alu 1 110 -7 1 1618 1704 208 30 0 chr5 135399035 135399396 -17137863 + MTEa LTR MaLR 8 379 0 1 1618 23 0 0 0 chr5 135399783 135399806 -17137453 + AT_rich Low_complexity Low_complexity 1 23 0 1 1618 729 197 7 0 chr5 135399997 135400139 -17137120 + URR1B DNA MER1_type 83 225 0 1 1618 314 191 63 0 chr5 135400863 135400926 -17136333 + B1_Mur4 SINE Alu 50 116 -34 1 1618 568 305 52 9 chr5 135401113 135401325 -17135934 + ID_B1 SINE B4 3 223 -1 1 1618 908 114 14 0 chr5 135401552 135401692 -17135567 + B1_Mus1 SINE Alu 6 147 -1 1 1618 402 267 51 70 chr5 135401557 135401714 -17135545 + B4A SINE B4 95 248 -44 1 1618 614 154 0 9 chr5 135401735 135401840 -17135419 + B3 SINE B2 10 113 -103 1 1618 417 86 0 0 chr5 135401907 135401965 -17135294 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1618 544 256 21 21 chr5 135401967 135402107 -17135152 - RSINE1 SINE B4 -24 141 2 1 1618 690 220 136 0 chr5 135402125 135402316 -17134943 - ID_B1 SINE B4 -7 217 1 1 1618 2621 170 27 25 chr5 135402366 135402880 -17134379 - RMER20A LTR ERVK -1 515 1 1 1618 670 259 136 105 chr5 135402983 135403146 -17134113 - RMER5 LTR ERV1 -1 533 377 1 1618 399 248 130 7 chr5 135403146 135403284 -17133975 + RSINE1 SINE B4 3 157 -8 1 1618 670 259 136 105 chr5 135403284 135403326 -17133933 - RMER5 LTR ERV1 -158 376 343 1 1618 1136 68 13 13 chr5 135403326 135403475 -17133784 - B1_Mur4 SINE Alu -1 149 1 1 1618 1375 82 11 21 chr5 135403482 135403670 -17133589 - B2_Mm2 SINE B2 -9 186 1 1 1618 670 259 136 105 chr5 135403670 135403933 -17133326 - RMER5 LTR ERV1 -192 342 41 1 1618 221 308 39 0 chr5 135404050 135404128 -17133131 + ID SINE ID 3 83 -141 1 1618 1312 85 0 5 chr5 135404462 135404651 -17132608 - B2_Mm2 SINE B2 -2 193 6 1 1618 402 39 0 0 chr5 135404683 135404735 -17132524 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1618 405 281 16 32 chr5 135404745 135404870 -17132389 - RSINE1 SINE B4 -40 125 3 1 1618 432 191 71 0 chr5 135405142 135405226 -17132033 - B1_Mur4 SINE Alu -60 90 1 1 1618 366 268 25 143 chr5 135405226 135405305 -17131954 - ID SINE ID -140 84 25 1 1618 250 300 11 11 chr5 135405422 135405513 -17131746 + ID_B1 SINE B4 51 141 -83 1 1618 666 193 29 29 chr5 135405526 135405665 -17131594 + B1_Mur4 SINE Alu 6 144 -6 1 1618 972 170 0 0 chr5 135406076 135406223 -17131036 + B1_Mur2 SINE Alu 1 147 -2 1 1618 1443 89 16 0 chr5 135406268 135406459 -17130800 + B2_Mm2 SINE B2 2 195 0 1 1618 937 254 5 10 chr5 135406627 135406708 -17130551 + ID SINE ID 2 81 -143 1 1618 430 299 29 29 chr5 135406708 135406846 -17130413 + B1F2 SINE Alu 1 138 -11 1 1618 227 242 48 0 chr5 135406832 135406894 -17130365 + RLTR19C LTR ERVK 33 97 -409 1 1618 321 89 0 0 chr5 135406931 135406976 -17130283 + (TTC)n Simple_repeat Simple_repeat 2 46 0 1 1618 1155 62 14 0 chr5 135406988 135407133 -17130126 - B1_Mus1 SINE Alu -1 147 1 1 1618 334 329 30 42 chr5 135407191 135407356 -17129903 + RLTR33 LTR ERVK 469 631 -47 1 1618 436 323 57 0 chr5 135407529 135407653 -17129606 + RSINE1 SINE B4 2 132 -33 1 1618 354 221 248 9 chr5 135407725 135407830 -17129429 + B1F2 SINE Alu 3 132 -17 1 1618 995 25 8 0 chr5 135407830 135407952 -17129307 + (GAAA)n Simple_repeat Simple_repeat 4 126 0 1 1618 585 144 0 0 chr5 135407952 135408056 -17129203 + (GGGA)n Simple_repeat Simple_repeat 1 104 0 1 1618 1232 35 0 0 chr5 135409051 135409193 -17128066 + B1_Mm SINE Alu 1 142 -5 1 1618 1414 132 2 3 chr5 135409526 135409874 -17127385 - ZP3AR Satellite Satellite -37 347 1 1 1618 452 241 102 29 chr5 135409880 135410017 -17127242 - B1F SINE Alu -2 147 1 1 1618 1017 53 8 2 chr5 135410474 135410618 -17126641 - B1_Mus1 SINE Alu -1 147 5 1 1618 493 274 87 22 chr5 135410700 135410883 -17126376 + Lx8 LINE L1 7164 7358 -115 1 1618 559 193 82 75 chr5 135410886 135411009 -17126250 + B1_Mus1 SINE Alu 2 116 -32 1 1618 351 0 0 0 chr5 135411009 135411048 -17126211 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1618 559 193 82 75 chr5 135411048 135411070 -17126189 + B1_Mus1 SINE Alu 117 148 0 1 1618 663 268 40 23 chr5 135411170 135411346 -17125913 + B3A SINE B2 1 179 -19 1 1618 461 233 192 0 chr5 135411347 135411467 -17125792 + B3A SINE B2 2 144 -54 1 1618 714 205 73 0 chr5 135411472 135411623 -17125636 - MTE2b LTR MaLR -217 162 1 1 1618 1411 68 11 4 chr5 135412256 135412556 -17124703 - ZP3AR Satellite Satellite -154 301 1 1 1618 823 250 14 28 chr5 135413124 135413147 -17124112 + B3 SINE B2 2 21 -195 1 1618 2075 149 78 11 chr5 135413147 135413520 -17123739 - RMER10B LTR ERVL 0 398 1 1 1618 823 250 14 28 chr5 135413520 135413710 -17123549 + B3 SINE B2 22 212 -4 1 1618 1144 55 7 0 chr5 135413780 135413925 -17123334 + B1_Mus2 SINE Alu 2 147 0 1 1618 436 257 44 9 chr5 135414125 135414239 -17123020 + PB1D9 SINE Alu 3 120 0 1 1618 786 213 50 17 chr5 135414486 135414667 -17122592 + B3 SINE B2 28 214 -2 1 1618 229 288 0 0 chr5 135414701 135414760 -17122499 - B1F SINE Alu -90 59 1 1 1618 331 320 39 16 chr5 135415025 135415152 -17122107 + B1F SINE Alu 20 149 0 1 1618 1542 52 1 1 chr5 135415176 135416110 -17121149 + ZP3AR Satellite Satellite 1 934 0 1 1618 21 0 0 0 chr5 135416152 135416173 -17121086 + AT_rich Low_complexity Low_complexity 1 21 0 1 1618 394 318 83 30 chr5 135416780 135417010 -17120249 + B4A SINE B4 29 270 -22 1 1618 635 229 63 38 chr5 135417170 135417329 -17119930 + RSINE1 SINE B4 3 165 0 1 1618 333 283 68 44 chr5 135417341 135417386 -17119873 + RSINE1 SINE B4 41 109 -183 1 1618 328 225 0 101 chr5 135417386 135417475 -17119784 + B1_Mus1 SINE Alu 5 84 -64 1 1618 333 283 68 44 chr5 135417475 135417591 -17119668 + RSINE1 SINE B4 110 292 0 1 1618 260 341 72 22 chr5 135417666 135417804 -17119455 - LTR31 LTR ERV1 -277 342 198 1 1618 358 316 30 8 chr5 135418019 135418153 -17119106 + B1F1 SINE Alu 6 142 -7 1 1618 695 207 24 10 chr5 135418170 135418349 -17118910 + B3 SINE B2 1 187 -8 1 1618 288 206 39 64 chr5 135418358 135418436 -17118823 + ZP3AR Satellite Satellite 13 88 -124 1 1618 780 154 8 30 chr5 135418543 135418677 -17118582 - B1_Mur3 SINE Alu -16 133 3 1 1618 231 36 0 0 chr5 135418678 135418706 -17118553 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1618 391 209 238 0 chr5 135418726 135418831 -17118428 - RSINE1 SINE B4 -33 132 3 1 1618 433 333 9 44 chr5 135418877 135419103 -17118156 - ID_B1 SINE B4 0 224 7 1 1618 529 146 0 70 chr5 135419148 135419262 -17117997 - B1F2 SINE Alu -1 148 39 1 1618 272 250 68 14 chr5 135419285 135419358 -17117901 + ID4 SINE ID 1 77 -6 1 1618 558 213 19 0 chr5 135419403 135419511 -17117748 - ID_B1 SINE B4 -6 218 109 1 1618 274 342 25 17 chr5 135419407 135419526 -17117733 + YREP_Mm Unknown Unknown 187 306 -1506 1 1618 241 361 8 47 chr5 135419600 135419728 -17117531 + RSINE1 SINE B4 3 125 -40 1 1618 424 300 120 5 chr5 135419775 135419966 -17117293 + ID_B1 SINE B4 6 218 -6 1 1618 676 240 65 11 chr5 135419966 135420151 -17117108 + ID_B1 SINE B4 25 219 -5 1 1618 193 29 59 0 chr5 135420483 135420517 -17116742 + (CCCCCA)n Simple_repeat Simple_repeat 1 36 0 1 1618 271 215 135 0 chr5 135420580 135420667 -17116592 + B1F SINE Alu 17 120 0 1 1618 262 184 61 0 chr5 135420746 135420795 -17116464 - PB1D7 SINE Alu -7 113 62 1 1618 245 228 0 17 chr5 135423537 135423595 -17113664 + RSINE1 SINE B4 4 60 -105 1 1618 834 172 0 0 chr5 135424427 135424584 -17112675 + CT-rich Low_complexity Low_complexity 1 157 0 1 1618 704 237 178 5 chr5 135424584 135424775 -17112484 - ID_B1 SINE B4 0 224 1 1 1618 966 100 56 21 chr5 135424903 135425046 -17112213 - B1_Mus1 SINE Alu 0 148 1 1 1618 524 249 44 3 chr5 135425049 135425187 -17112072 - B1F SINE Alu 0 149 5 1 1618 338 225 25 12 chr5 135425366 135425447 -17111812 - B1F1 SINE Alu -53 96 15 1 1618 450 252 8 25 chr5 135425707 135425825 -17111434 + PB1D10 SINE Alu 1 116 -1 1 1618 1218 62 0 0 chr5 135425984 135426130 -17111129 + B1_Mus1 SINE Alu 1 146 -2 1 1618 242 68 45 0 chr5 135426132 135426176 -17111083 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 1 1618 29 0 0 0 chr5 135426277 135426306 -17110953 + AT_rich Low_complexity Low_complexity 1 29 0 1 1618 1231 35 7 0 chr5 135426309 135426454 -17110805 + B1_Mm SINE Alu 2 147 0 1 1618 511 307 24 12 chr5 135426477 135426645 -17110614 + ID_B1 SINE B4 2 171 -53 1 1618 292 305 12 0 chr5 135426654 135426672 -17110587 + ID_B1 SINE B4 65 110 -114 1 1618 325 154 0 0 chr5 135426672 135426724 -17110535 + PB1D9 SINE Alu 3 54 -66 1 1618 292 305 12 0 chr5 135426724 135426736 -17110523 + ID_B1 SINE B4 111 147 -77 1 1618 238 210 16 31 chr5 135426737 135426801 -17110458 + GA-rich Low_complexity Low_complexity 2 64 0 1 1618 309 273 82 40 chr5 135426801 135426941 -17110318 + B1F2 SINE Alu 1 148 -1 1 1618 708 121 46 23 chr5 135427979 135428241 -17109018 + (TG)n Simple_repeat Simple_repeat 1 267 0 1 1618 240 35 0 0 chr5 135428243 135428272 -17108987 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1618 539 200 254 0 chr5 135428278 135428443 -17108816 - B4A SINE B4 -84 208 2 1 1618 701 123 245 7 chr5 135429421 135429576 -17107683 - URR1A DNA MER1_type 0 226 35 1 1618 444 19 0 0 chr5 135429586 135429639 -17107620 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1618 652 226 0 0 chr5 135429640 135429764 -17107495 - RSINE1 SINE B4 -40 125 2 1 1618 506 216 18 103 chr5 135429993 135430057 -17107202 + MT2B LTR ERVL 107 156 -445 1 1618 918 56 0 8 chr5 135430057 135430178 -17107081 + B1_Mus2 SINE Alu 2 122 -25 1 1618 244 0 27 27 chr5 135430178 135430215 -17107044 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1618 536 210 176 0 chr5 135430397 135430516 -17106743 - ID_B1 SINE B4 -3 221 82 1 1618 379 303 128 0 chr5 135430707 135430816 -17106443 - RSINE1 SINE B4 -28 137 15 1 1618 276 77 0 0 chr5 135430837 135430876 -17106383 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1618 330 188 173 12 chr5 135430879 135430960 -17106299 - B4A SINE B4 -72 220 127 1 1618 439 301 0 102 chr5 135430922 135431137 -17106122 + ID_B1 SINE B4 32 224 0 1 1618 768 175 0 34 chr5 135430990 135431138 -17106121 + B1_Mus1 SINE Alu 6 148 0 1 1618 1101 198 14 29 chr5 135431203 135431411 -17105848 - B3 SINE B2 -11 205 1 1 1618 791 167 13 13 chr5 135431771 135431923 -17105336 + URR1A DNA MER1_type 75 226 0 1 1618 1161 82 0 0 chr5 135432236 135432383 -17104876 - B1_Mus1 SINE Alu 0 148 2 1 1618 291 202 430 0 chr5 135432691 135432805 -17104454 + B4 SINE B4 57 219 -73 1 1618 314 170 67 105 chr5 135432801 135432906 -17104353 + MT2B LTR ERVL 155 255 -346 1 1618 713 159 0 16 chr5 135432818 135432946 -17104313 + B1_Mus1 SINE Alu 14 139 -9 1 1618 269 340 61 75 chr5 135432906 135432946 -17104313 + B4A SINE B4 83 218 -74 1 1618 432 0 0 0 chr5 135432946 135432994 -17104265 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1618 269 340 61 75 chr5 135432994 135433060 -17104199 + B4A SINE B4 219 290 -2 1 1618 306 234 0 38 chr5 135433518 135433598 -17103661 + ZP3AR Satellite Satellite 29 105 -107 1 1618 894 116 0 0 chr5 135434325 135434463 -17102796 + (TTTC)n Simple_repeat Simple_repeat 4 141 0 1 1618 520 97 0 0 chr5 135434468 135434540 -17102719 - B1_Mus2 SINE Alu -3 144 73 1 1618 328 185 15 0 chr5 135434609 135434674 -17102585 - B3A SINE B2 -132 66 1 1 1618 394 285 67 30 chr5 135434676 135434810 -17102449 - ID_B1 SINE B4 -3 221 83 1 1618 1014 103 20 0 chr5 135435497 135435800 -17101459 + (TG)n Simple_repeat Simple_repeat 1 309 0 1 1618 1421 69 21 5 chr5 135436001 135436190 -17101069 - B2_Mm2 SINE B2 -2 193 2 1 1618 640 298 107 5 chr5 135436192 135436398 -17100861 - B4A SINE B4 -64 228 2 1 1618 326 301 11 7 chr5 135436799 135436923 -17100336 - ID4 SINE ID -27 125 1 1 1618 312 224 0 0 chr5 135436880 135436938 -17100321 - ZP3AR Satellite Satellite -127 85 28 1 1618 239 242 304 11 chr5 135436971 135437063 -17100196 - PB1D9 SINE Alu 0 120 2 1 1618 573 210 148 12 chr5 135437326 135437495 -17099764 + B3A SINE B2 2 193 -5 1 1618 868 200 0 7 chr5 135437500 135437646 -17099613 + B1_Mus2 SINE Alu 3 147 0 1 1618 192 362 0 0 chr5 135437723 135437781 -17099478 + L2a LINE L2 3270 3327 -99 1 1618 274 358 37 6 chr5 135437781 135437944 -17099315 + ID_B1 SINE B4 49 216 -8 1 1618 1530 52 0 2 chr5 135437936 135438416 -17098843 + ZP3AR Satellite Satellite 1 479 0 1 1618 335 291 58 0 chr5 135438376 135438479 -17098780 + BC1_Mm scRNA scRNA 1 109 -43 1 1618 210 185 18 18 chr5 135438595 135438650 -17098609 - B4 SINE B4 -157 135 81 1 1618 256 341 32 0 chr5 135438639 135438765 -17098494 - ID4 SINE ID -14 138 9 1 1618 232 259 0 0 chr5 135438833 135438891 -17098368 + PB1D7 SINE Alu 1 58 -62 1 1618 1233 49 0 0 chr5 135438893 135439037 -17098222 + B1_Mus1 SINE Alu 5 148 0 1 1618 189 0 0 0 chr5 135439039 135439060 -17098199 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1618 363 229 12 9 chr5 135439062 135439143 -17098116 + B1_Mur4 SINE Alu 36 110 -10 1 1618 553 160 3 0 chr5 135439216 135439320 -17097939 - B1_Mus1 SINE Alu -9 111 7 1 1618 1398 86 16 0 chr5 135439865 135440051 -17097208 - B2_Mm2 SINE B2 -5 190 2 1 1618 355 230 27 0 chr5 135440058 135440132 -17097127 - B3 SINE B2 -4 212 137 1 1618 787 283 11 0 chr5 135440198 135440378 -17096881 + B3A SINE B2 1 182 -16 1 1618 685 203 0 8 chr5 135440394 135440523 -17096736 + B1_Mur2 SINE Alu 1 128 -21 1 1618 408 88 0 0 chr5 135440531 135440588 -17096671 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1 1618 905 230 5 16 chr5 135440588 135440778 -17096481 + B3 SINE B2 1 188 -28 1 1618 715 61 0 0 chr5 135440777 135440875 -17096384 + B1_Mm SINE Alu 47 144 -3 1 1618 426 20 0 0 chr5 135440875 135440926 -17096333 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1 1618 785 167 68 0 chr5 135441015 135441147 -17096112 + B1_Mus1 SINE Alu 1 141 -7 1 1618 552 223 7 86 chr5 135441248 135441400 -17095859 - B1_Mur1 SINE Alu -8 141 2 1 1618 490 293 79 13 chr5 135442028 135442047 -17095212 - RSINE1 SINE B4 -2 163 146 1 1618 425 19 19 0 chr5 135442047 135442101 -17095158 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1618 490 293 79 13 chr5 135442101 135442233 -17095026 - RSINE1 SINE B4 -20 145 2 1 1618 402 237 17 34 chr5 135442758 135442876 -17094383 + B3 SINE B2 100 215 -1 1 1618 605 184 144 0 chr5 135444072 135444197 -17093062 - B1_Mus1 SINE Alu -4 144 2 1 1618 266 0 29 0 chr5 135444198 135444232 -17093027 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1 1618 636 199 84 0 chr5 135444373 135444504 -17092755 + B1_Mur2 SINE Alu 1 142 -7 1 1618 299 330 73 0 chr5 135444552 135444661 -17092598 + ID_B1 SINE B4 35 151 -73 1 1618 525 232 60 75 chr5 135444708 135445143 -17092116 - RMER17C LTR ERVK -52 358 1 1 1618 663 130 52 82 chr5 135445153 135445287 -17091972 + B1_Mus2 SINE Alu 10 139 -8 1 1618 466 250 16 8 chr5 135445323 135445444 -17091815 - ID_B1 SINE B4 -9 215 94 1 1618 409 264 0 19 chr5 135445607 135445715 -17091544 + PB1D10 SINE Alu 4 109 -8 1 1618 280 270 16 0 chr5 135445729 135445792 -17091467 + ID4 SINE ID 2 65 -18 1 1618 303 175 0 81 chr5 135445796 135445858 -17091401 - ID_B1 SINE B4 -2 222 166 1 1618 1147 36 0 0 chr5 135445891 135446029 -17091230 - B1_Mus2 SINE Alu -9 138 1 1 1618 478 276 8 16 chr5 135446138 135446221 -17091038 - B3 SINE B2 -92 124 42 1 1618 1453 63 16 0 chr5 135446221 135446411 -17090848 - B2_Mm2 SINE B2 -2 193 1 1 1618 478 276 8 16 chr5 135446411 135446452 -17090807 - B3 SINE B2 -175 41 1 1 1618 550 317 0 14 chr5 135446452 135446590 -17090669 - ID_B1 SINE B4 -88 136 1 1 1618 433 297 20 33 chr5 135446827 135446977 -17090282 - B1F1 SINE Alu -1 148 1 1 1618 180 97 0 0 chr5 135446995 135447026 -17090233 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1618 669 206 20 7 chr5 135447026 135447173 -17090086 - B1_Mur3 SINE Alu 0 149 1 1 1618 473 204 34 0 chr5 135447360 135447448 -17089811 + B1F1 SINE Alu 46 136 -13 1 1618 42 36 0 0 chr5 135447458 135447514 -17089745 + AT_rich Low_complexity Low_complexity 1 56 0 1 1618 207 0 0 0 chr5 135447519 135447542 -17089717 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1 1618 909 212 40 5 chr5 135447551 135447750 -17089509 + B3 SINE B2 1 206 -10 1 1618 33 45 0 29 chr5 135447763 135447793 -17089466 + AT_rich Low_complexity Low_complexity 1 30 0 1 1618 1122 83 0 0 chr5 135447793 135447938 -17089321 + B1_Mus2 SINE Alu 2 146 -1 1 1618 33 45 0 29 chr5 135447938 135447976 -17089283 + AT_rich Low_complexity Low_complexity 1 37 0 1 1618 1035 115 0 0 chr5 135448001 135448158 -17089101 + (GAA)n Simple_repeat Simple_repeat 1 157 0 1 1618 421 310 0 0 chr5 135448336 135448449 -17088810 + RSINE1 SINE B4 13 125 -40 1 1618 477 207 24 119 chr5 135448564 135448690 -17088569 + PB1D7 SINE Alu 6 119 -1 1 1618 424 202 141 0 chr5 135448705 135448804 -17088455 + PB1D9 SINE Alu 5 117 -3 1 1618 390 298 0 0 chr5 135448934 135449038 -17088221 - RSINE1 SINE B4 -59 106 3 1 1618 582 210 12 77 chr5 135449289 135449445 -17087814 - B1_Mur1 SINE Alu -1 148 2 1 1618 210 226 73 161 chr5 135449456 135449593 -17087666 - B3A SINE B2 0 198 74 1 1618 338 269 43 9 chr5 135449627 135449743 -17087516 - PB1D7 SINE Alu 0 120 1 1 1618 443 250 27 0 chr5 135449751 135449863 -17087396 + MER31A LTR ERV1 355 469 -16 1 1618 334 256 12 0 chr5 135449863 135449945 -17087314 - ID4 SINE ID 0 83 1 1 1618 691 81 0 0 chr5 135449945 135450044 -17087215 - ZP3AR Satellite Satellite -64 148 50 1 1618 439 283 9 15 chr5 135450587 135450932 -17086327 + CT-rich Low_complexity Low_complexity 1 342 0 1 1618 658 269 77 57 chr5 135450932 135451141 -17086118 - ID_B1 SINE B4 -3 221 9 1 1618 786 97 0 0 chr5 135451151 135451264 -17085995 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 1 1618 310 128 17 21 chr5 135451264 135451359 -17085900 - B2_Mm2 SINE B2 -15 180 47 1 1618 1014 109 85 0 chr5 135451391 135451556 -17085703 - B2_Mm1t SINE B2 -14 179 1 1 1618 323 191 67 11 chr5 135451581 135451671 -17085588 - PB1D10 SINE Alu 0 117 23 1 1618 284 314 50 25 chr5 135451679 135451800 -17085459 + L1MDa LINE L1 202 325 -6308 1 1618 425 302 8 23 chr5 135451838 135451967 -17085292 + MTEa LTR MaLR 5 131 -248 1 1618 386 326 54 0 chr5 135452219 135452366 -17084893 + L1MDa LINE L1 929 1083 -5550 1 1618 1233 107 13 0 chr5 135452372 135452609 -17084650 + ZP3AR Satellite Satellite 1 240 0 1 1618 833 241 0 0 chr5 135452657 135452819 -17084440 + ID_B1 SINE B4 6 167 -57 1 1618 461 256 35 21 chr5 135452893 135453041 -17084218 - L1M4 LINE L1 -653 5521 5372 1 1618 2790 139 45 23 chr5 135453041 135453376 -17083883 - RLTR11A LTR ERVK -2 526 180 1 1618 414 0 0 0 chr5 135453376 135453422 -17083837 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1618 2790 139 45 23 chr5 135453422 135453601 -17083658 - RLTR11A LTR ERVK -349 179 1 1 1618 397 274 33 27 chr5 135453601 135453639 -17083620 - L1M4 LINE L1 -1073 5371 5332 1 1618 639 71 0 0 chr5 135453639 135453724 -17083535 + (TC)n Simple_repeat Simple_repeat 1 85 0 1 1618 786 259 25 49 chr5 135453774 135453977 -17083282 - ID_B1 SINE B4 -7 217 20 1 1618 666 192 85 0 chr5 135454066 135454196 -17083063 - B1_Mus1 SINE Alu -6 142 2 1 1618 446 214 186 11 chr5 135454196 135454396 -17082863 - L1MA6 LINE L1 -320 5980 5754 1 1618 548 196 6 101 chr5 135454432 135454591 -17082668 - ID_B1 SINE B4 0 224 81 1 1618 554 230 122 30 chr5 135454997 135455194 -17082065 + B3 SINE B2 1 215 -1 1 1618 264 122 0 0 chr5 135455334 135455375 -17081884 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1 1618 591 145 110 37 chr5 135455508 135455644 -17081615 - B1_Mur2 SINE Alu -3 146 1 1 1618 625 202 0 0 chr5 135455705 135455809 -17081450 - B3 SINE B2 -86 130 27 1 1618 320 0 25 0 chr5 135455809 135455849 -17081410 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1 1618 1122 56 14 0 chr5 135455851 135455995 -17081264 - B1_Mm SINE Alu -1 146 1 1 1618 875 138 30 60 chr5 135455995 135456195 -17081064 - B2_Mm2 SINE B2 0 195 1 1 1618 473 217 22 58 chr5 135456228 135456365 -17080894 + B1_Mur1 SINE Alu 2 133 -16 1 1618 595 252 24 30 chr5 135456670 135456834 -17080425 - RSINE1 SINE B4 0 165 3 1 1618 339 260 28 114 chr5 135456843 135457016 -17080243 - L1MA6 LINE L1 -721 5579 5423 1 1618 268 189 19 0 chr5 135457017 135457070 -17080189 - L1M4 LINE L1 -814 5332 5279 1 1618 363 208 45 98 chr5 135457682 135457815 -17079444 - ORR1D2 LTR MaLR -53 317 192 1 1618 1003 68 0 0 chr5 135457870 135458003 -17079256 + B1_Mm SINE Alu 15 147 0 1 1618 186 143 0 0 chr5 135458003 135458038 -17079221 + (A)n Simple_repeat Simple_repeat 1 35 0 1 1618 575 254 8 0 chr5 135458042 135458172 -17079087 - B1_Mur1 SINE Alu -18 131 1 1 1618 600 284 97 0 chr5 135458245 135458421 -17078838 - B4A SINE B4 -16 276 84 1 1618 750 144 0 16 chr5 135458446 135458573 -17078686 - B1_Mus2 SINE Alu 0 147 23 1 1618 597 122 0 20 chr5 135458586 135458686 -17078573 + PB1D9 SINE Alu 11 108 -12 1 1618 216 0 0 0 chr5 135458687 135458711 -17078548 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1 1618 288 0 0 0 chr5 135458812 135458844 -17078415 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 1 1618 347 244 0 11 chr5 135458886 135458973 -17078286 - B4 SINE B4 -206 86 1 1 1618 642 207 0 0 chr5 135459409 135459645 -17077614 + (TG)n Simple_repeat Simple_repeat 1 236 0 1 1618 530 325 20 0 chr5 135459650 135459801 -17077458 - RSINE1 SINE B4 0 165 12 1 1618 264 291 39 79 chr5 135459959 135460086 -17077173 - L2a LINE L2 -39 3387 3266 1 1618 333 309 0 26 chr5 135460171 135460284 -17076975 + G-rich Low_complexity Low_complexity 2 111 0 1 1618 699 113 0 17 chr5 135460355 135460464 -17076795 + B1_Mus1 SINE Alu 30 137 -11 1 1618 240 35 0 0 chr5 135460464 135460493 -17076766 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1 1618 344 238 12 0 chr5 135460642 135460726 -17076533 - ID SINE ID -139 85 1 1 1618 517 177 61 9 chr5 135460983 135461097 -17076162 - ID_B1 SINE B4 -6 218 99 1 1618 262 206 127 0 chr5 135461126 135461189 -17076070 - PB1D7 SINE Alu -8 112 42 1 1618 359 188 14 0 chr5 135463838 135463907 -17073352 + ID4 SINE ID 6 75 -8 1 1618 751 145 17 23 chr5 135464198 135464333 -17072926 + T-rich Low_complexity Low_complexity 46 179 0 1 1618 988 100 0 39 chr5 135464333 135464489 -17072770 - B1_Mur4 SINE Alu 0 150 1 1 1618 751 145 17 23 chr5 135464489 135464529 -17072730 + T-rich Low_complexity Low_complexity 6 45 0 1 1618 213 39 0 0 chr5 135464529 135464555 -17072704 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1618 335 158 53 0 chr5 135464555 135464612 -17072647 - B1_Mm SINE Alu -14 133 74 1 1618 254 167 62 0 chr5 135464627 135464675 -17072584 + ID_B1 SINE B4 167 217 -7 1 1618 725 194 43 0 chr5 135464684 135464823 -17072436 + B1_Mur1 SINE Alu 5 149 0 1 1618 688 140 13 83 chr5 135465005 135465161 -17072098 + B1_Mur4 SINE Alu 3 147 -3 1 1618 213 273 179 13 chr5 135465695 135465773 -17071486 - PB1D7 SINE Alu -9 111 21 1 1618 515 212 71 28 chr5 135466043 135466184 -17071075 + B1F SINE Alu 2 148 -1 1 1618 21 36 0 0 chr5 135466236 135466264 -17070995 + AT_rich Low_complexity Low_complexity 1 28 0 1 1618 436 290 13 80 chr5 135466281 135466431 -17070828 - B4 SINE B4 -142 150 11 1 1618 438 295 20 27 chr5 135466834 135466984 -17070275 + B1F SINE Alu 1 149 0 1 1618 487 267 57 26 chr5 135466986 135467178 -17070081 + B3A SINE B2 1 198 0 1 1618 723 187 29 0 chr5 135467189 135467328 -17069931 + B1_Mur4 SINE Alu 8 150 0 1 1618 1122 36 7 0 chr5 135467379 135467517 -17069742 + B1_Mm SINE Alu 1 139 -8 1 1618 549 0 0 0 chr5 135467517 135467578 -17069681 + (GA)n Simple_repeat Simple_repeat 2 62 0 1 1618 526 112 56 0 chr5 135467640 135467729 -17069530 + B1_Mus1 SINE Alu 6 99 -49 1 1618 247 254 84 56 chr5 135467753 135467824 -17069435 + ID4 SINE ID 1 73 -10 1 1618 360 0 0 0 chr5 135467841 135467881 -17069378 + (GA)n Simple_repeat Simple_repeat 2 41 0 1 1618 337 277 0 54 chr5 135467886 135468009 -17069250 + B1F2 SINE Alu 6 120 0 1 1618 477 196 0 11 chr5 135468051 135468144 -17069115 + PB1D9 SINE Alu 26 117 -3 1 1618 206 86 0 54 chr5 135468148 135468168 -17069091 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1618 1228 106 32 0 chr5 135468168 135468356 -17068903 + B2_Mm2 SINE B2 2 195 0 1 1618 206 86 0 54 chr5 135468356 135468372 -17068887 + (CAA)n Simple_repeat Simple_repeat 1 15 0 1 1618 883 127 0 57 chr5 135468959 135469118 -17068141 + B1_Mur4 SINE Alu 1 150 0 1 1618 1095 137 47 5 chr5 135469127 135469318 -17067941 - B3 SINE B2 -17 199 1 1 1618 564 289 25 59 chr5 135469323 135469525 -17067734 - B3A SINE B2 0 198 4 1 1618 233 226 20 143 chr5 135469712 135469810 -17067449 - BC1_Mm scRNA scRNA -66 86 1 1 1618 522 112 11 0 chr5 135469772 135469861 -17067398 - ZP3AR Satellite Satellite -78 134 45 1 1618 636 205 8 39 chr5 135469971 135470085 -17067174 - RSINE1 SINE B4 -23 142 31 1 1618 533 55 14 0 chr5 135470085 135470158 -17067101 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 1 1618 636 205 8 39 chr5 135470158 135470170 -17067089 - RSINE1 SINE B4 -135 30 20 1 1618 200 62 123 0 chr5 135470189 135470270 -17066989 + (TCTA)n Simple_repeat Simple_repeat 1 91 0 1 1618 600 125 0 0 chr5 135470291 135470387 -17066872 + (TCTA)n Simple_repeat Simple_repeat 2 97 0 1 1618 1077 185 0 42 chr5 135470463 135470677 -17066582 - B3 SINE B2 -10 206 2 1 1618 538 261 34 0 chr5 135470830 135470949 -17066310 + ZP3AR Satellite Satellite 35 157 -55 1 1618 464 259 63 91 chr5 135471016 135471335 -17065924 + Lx9 LINE L1 7218 7527 -117 1 1618 414 139 27 65 chr5 135471335 135471520 -17065739 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 1 1618 649 248 18 36 chr5 135471647 135471814 -17065445 - RSINE1 SINE B4 -1 164 1 1 1618 511 278 17 78 chr5 135472030 135472109 -17065150 + ID SINE ID 5 84 -140 1 1618 204 40 0 0 chr5 135472109 135472134 -17065125 + (TAAAA)n Simple_repeat Simple_repeat 4 28 0 1 1618 511 278 17 78 chr5 135472134 135472284 -17064975 + ID_B1 SINE B4 85 220 -4 1 1618 324 263 118 15 chr5 135472290 135472425 -17064834 + B1_Mur4 SINE Alu 1 149 -1 1 1618 261 239 14 29 chr5 135472481 135472550 -17064709 + ID4_ SINE ID 16 83 0 1 1618 216 217 22 0 chr5 135472575 135472621 -17064638 + L2a LINE L2 3378 3424 -2 1 1618 382 271 67 17 chr5 135472861 135472921 -17064338 + B1_Mur1 SINE Alu 24 88 -61 1 1618 224 59 29 0 chr5 135472921 135472955 -17064304 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 1 1618 443 18 18 0 chr5 135472959 135473015 -17064244 + (TATG)n Simple_repeat Simple_repeat 1 57 0 1 1618 382 271 67 17 chr5 135473015 135473069 -17064190 + B1_Mur1 SINE Alu 89 142 -7 1 1618 572 200 12 161 chr5 135473090 135473251 -17064008 + ID_B1 SINE B4 82 218 -6 1 1618 371 245 0 50 chr5 135473262 135473361 -17063898 + RSINE1 SINE B4 3 96 -69 1 1618 351 0 0 0 chr5 135473367 135473406 -17063853 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1618 22 35 0 0 chr5 135473426 135473455 -17063804 + AT_rich Low_complexity Low_complexity 1 29 0 1 1618 792 151 7 21 chr5 135473457 135473599 -17063660 + B1_Mus1 SINE Alu 2 141 -7 1 1618 243 0 0 0 chr5 135473611 135473638 -17063621 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1618 266 204 10 0 chr5 135474070 135474173 -17063086 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 1618 264 343 17 56 chr5 135474173 135474199 -17063060 - B3A SINE B2 -16 182 139 1 1618 346 237 0 62 chr5 135474199 135474280 -17062979 - B4A SINE B4 0 292 217 1 1618 264 343 17 56 chr5 135474280 135474352 -17062907 - B3A SINE B2 -16 138 11 1 1618 666 265 12 100 chr5 135474346 135474597 -17062662 - B4A SINE B4 -63 229 1 1 1618 218 250 89 0 chr5 135474614 135474670 -17062589 + B1F2 SINE Alu 1 61 -88 1 1618 343 212 281 1 chr5 135474675 135474810 -17062449 + B3 SINE B2 43 216 0 1 1618 249 33 0 0 chr5 135474815 135474845 -17062414 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1 1618 520 226 61 0 chr5 135474854 135474969 -17062290 + ID_B1 SINE B4 97 218 -6 1 1618 1025 206 92 58 chr5 135475088 135475381 -17061878 + MTEb LTR MaLR 37 339 -40 1 1618 234 0 0 0 chr5 135475407 135475433 -17061826 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1618 999 75 0 87 chr5 135475433 135475594 -17061665 - B1_Mus2 SINE Alu 0 147 1 1 1618 843 118 44 0 chr5 135475596 135475732 -17061527 + B1_Mus2 SINE Alu 6 147 0 1 1618 280 68 45 0 chr5 135475843 135475887 -17061372 - U2 snRNA snRNA -142 46 1 1 1618 237 33 0 0 chr5 135476027 135476057 -17061202 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1618 226 237 62 0 chr5 135476268 135476365 -17060894 + (CTGTG)n Simple_repeat Simple_repeat 5 107 0 1 1618 295 228 68 0 chr5 135476399 135476561 -17060698 + (CTGTG)n Simple_repeat Simple_repeat 5 177 0 1 1618 269 253 66 0 chr5 135476562 135476728 -17060531 + (GTGTG)n Simple_repeat Simple_repeat 1 177 0 1 1618 319 41 41 0 chr5 135477452 135477501 -17059758 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1618 411 208 109 0 chr5 135477651 135477752 -17059507 + RSINE1 SINE B4 50 161 -4 1 1618 856 137 13 0 chr5 135477772 135477925 -17059334 + GA-rich Low_complexity Low_complexity 2 156 0 1 1618 780 234 19 0 chr5 135478414 135478568 -17058691 + RSINE1 SINE B4 3 159 -6 1 1618 211 171 39 26 chr5 135478607 135478685 -17058574 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 1 1618 727 138 47 68 chr5 135478699 135478847 -17058412 + B1_Mur3 SINE Alu 5 149 0 1 1618 680 202 0 8 chr5 135478888 135479018 -17058241 + B1F SINE Alu 21 149 0 1 1618 4483 31 0 4 chr5 135479041 135479588 -17057671 + L1Md_F2 LINE L1 6030 6574 -8 1 1618 638 66 0 21 chr5 135479598 135479691 -17057568 + (GAA)n Simple_repeat Simple_repeat 2 92 0 1 1618 641 186 26 40 chr5 135479700 135479851 -17057408 + B1_Mur4 SINE Alu 1 149 -1 1 1618 594 244 24 49 chr5 135479886 135480050 -17057209 + ID_B1 SINE B4 1 160 -64 1 1618 329 0 24 0 chr5 135480059 135480100 -17057159 + (GAAA)n Simple_repeat Simple_repeat 1 42 0 1 1618 1045 124 0 17 chr5 135480102 135480283 -17056976 + (GGGA)n Simple_repeat Simple_repeat 3 180 0 1 1618 873 200 44 0 chr5 135480289 135480469 -17056790 + B3 SINE B2 29 216 0 1 1618 1303 87 5 16 chr5 135480472 135480659 -17056600 + B2_Mm1t SINE B2 1 185 -8 1 1618 247 284 0 75 chr5 135481037 135481117 -17056142 - ID4_ SINE ID -1 82 9 1 1618 292 183 67 0 chr5 135481137 135481197 -17056062 - B1_Mm SINE Alu -2 145 82 1 1618 794 234 18 0 chr5 135481207 135481374 -17055885 - B3 SINE B2 -46 170 1 1 1618 763 158 45 0 chr5 135481447 135481580 -17055679 + B1_Mus2 SINE Alu 2 140 -7 1 1618 345 311 9 9 chr5 135481643 135481750 -17055509 + PB1D10 SINE Alu 2 108 -9 1 1618 866 199 22 49 chr5 135481826 135482011 -17055248 + B3 SINE B2 35 214 -2 1 1618 883 116 58 0 chr5 135482147 135482285 -17054974 + B1_Mur4 SINE Alu 5 150 0 1 1618 380 20 0 20 chr5 135482290 135482340 -17054919 + (GAAA)n Simple_repeat Simple_repeat 3 51 0 1 1618 648 0 0 0 chr5 135482340 135482411 -17054848 + (GGGA)n Simple_repeat Simple_repeat 4 75 0 1 1618 540 0 0 0 chr5 135482706 135482766 -17054493 + (GAAA)n Simple_repeat Simple_repeat 3 62 0 1 1618 225 311 60 105 chr5 135483023 135483156 -17054103 + PB1 SINE Alu 1 127 0 1 1618 408 211 41 21 chr5 135483173 135483270 -17053989 + PB1D10 SINE Alu 19 117 0 1 1618 793 188 14 21 chr5 135483297 135483438 -17053821 + B1_Mur2 SINE Alu 2 141 -8 1 1618 833 210 70 0 chr5 135483446 135483646 -17053613 + B3 SINE B2 3 216 0 1 1618 315 0 0 0 chr5 135483652 135483687 -17053572 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1618 594 231 35 0 chr5 135484055 135484198 -17053061 - B1_Mur3 SINE Alu 0 149 2 1 1618 372 281 146 39 chr5 135486221 135486454 -17050805 + RMER10A LTR ERVL 12 269 -173 1 1618 217 260 20 0 chr5 135486455 135486505 -17050754 + RSINE1 SINE B4 98 148 -17 1 1618 381 43 0 0 chr5 135486607 135486654 -17050605 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1618 201 175 0 0 chr5 135487664 135487704 -17049555 + CT-rich Low_complexity Low_complexity 1 40 0 1 1618 22 35 0 0 chr5 135489258 135489287 -17047972 + GC_rich Low_complexity Low_complexity 1 29 0 1 1618 1525 31 5 10 chr5 135489345 135489538 -17047721 - B2_Mm1t SINE B2 0 193 2 1 1618 281 26 26 0 chr5 135489607 135489645 -17047614 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1618 723 144 96 0 chr5 135489648 135489773 -17047486 - B1_Mur4 SINE Alu -13 137 1 1 1618 575 56 90 0 chr5 135490011 135490100 -17047159 - B1_Mus2 SINE Alu -1 146 50 1 1618 636 86 19 28 chr5 135490094 135490202 -17047057 - ZP3AR Satellite Satellite -62 150 44 1 1618 292 218 231 0 chr5 135490287 135490365 -17046894 - B1_Mur4 SINE Alu -21 129 34 1 1618 219 36 0 0 chr5 135490369 135490397 -17046862 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 1618 1235 79 0 0 chr5 135490397 135490561 -17046698 - B2_Mm2 SINE B2 -30 165 2 1 1618 371 117 98 2 chr5 135490561 135490642 -17046617 + B1_Mur3 SINE Alu 14 100 -49 1 1618 373 193 0 78 chr5 135490668 135490758 -17046501 - B1_Mus2 SINE Alu -5 142 60 1 1618 1378 70 5 21 chr5 135490779 135490970 -17046289 + B2_Mm1t SINE B2 2 189 -4 1 1618 388 252 213 0 chr5 135491129 135491256 -17046003 + B3A SINE B2 9 162 -36 1 1618 269 173 0 37 chr5 135491266 135491320 -17045939 + ZP3AR Satellite Satellite 48 99 -113 1 1618 424 227 0 30 chr5 135491753 135491853 -17045406 + ID_B1 SINE B4 90 186 -38 1 1618 574 116 241 0 chr5 135491856 135491968 -17045291 + B1_Mur3 SINE Alu 4 142 -7 1 1618 188 135 0 26 chr5 135491974 135492012 -17045247 + GA-rich Low_complexity Low_complexity 4 40 0 1 1618 447 264 24 24 chr5 135492240 135492364 -17044895 - B1_Mm SINE Alu -12 135 12 1 1618 240 135 0 0 chr5 135492402 135492439 -17044820 - B3 SINE B2 -61 155 119 1 1618 1168 100 0 108 chr5 135492503 135492553 -17044706 - B2_Mm2 SINE B2 -5 190 160 1 1618 432 0 0 0 chr5 135492553 135492601 -17044658 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1 1618 1168 100 0 108 chr5 135492601 135492763 -17044496 - B2_Mm2 SINE B2 -36 159 1 1 1618 359 273 33 130 chr5 135492806 135492829 -17044430 - B2_Mm2 SINE B2 0 195 173 1 1618 675 181 79 7 chr5 135492829 135492968 -17044291 - B1_Mur4 SINE Alu -1 149 1 1 1618 738 241 53 3 chr5 135492968 135493159 -17044100 - B3A SINE B2 0 198 2 1 1618 883 162 0 39 chr5 135493212 135493366 -17043893 - B1_Mur4 SINE Alu -1 149 2 1 1618 1432 58 16 0 chr5 135493394 135493583 -17043676 + B2_Mm2 SINE B2 3 194 -1 1 1618 360 335 69 5 chr5 135493846 135494050 -17043209 + L2a LINE L2 2936 3152 -274 1 1618 653 173 15 30 chr5 135494072 135494203 -17043056 + B1_Mur1 SINE Alu 2 130 -19 1 1618 632 221 14 28 chr5 135494271 135494415 -17042844 - B1_Mus2 SINE Alu 0 147 6 1 1618 727 249 83 15 chr5 135494465 135494669 -17042590 + B4 SINE B4 1 218 -74 1 1618 965 227 5 0 chr5 135494711 135494909 -17042350 + B3 SINE B2 3 201 -15 1 1618 834 154 7 0 chr5 135494910 135495046 -17042213 - B1_Mus1 SINE Alu -2 146 10 1 1618 1172 54 0 0 chr5 135495128 135495276 -17041983 + B1_Mus1 SINE Alu 1 148 0 1 1618 221 287 174 9 chr5 135495363 135495472 -17041787 + B1F SINE Alu 1 127 -22 1 1618 1194 166 16 48 chr5 135495490 135495732 -17041527 + ZP3AR Satellite Satellite 1 234 0 1 1618 848 121 0 14 chr5 135495756 135495898 -17041361 + (GAAA)n Simple_repeat Simple_repeat 1 140 0 1 1618 1454 53 0 16 chr5 135495958 135496151 -17041108 - B2_Mm2 SINE B2 -5 190 1 1 1618 450 180 123 62 chr5 135496416 135496546 -17040713 + B1F1 SINE Alu 12 149 0 1 1618 596 245 38 13 chr5 135496554 135496711 -17040548 + ID_B1 SINE B4 4 164 -60 1 1618 277 240 9 115 chr5 135496641 135496754 -17040505 + PB1D10 SINE Alu 11 111 -6 1 1618 1605 165 33 5 chr5 135496945 135497266 -17039993 - ORR1B1 LTR MaLR -8 386 5 1 1618 249 257 83 28 chr5 135497292 135497400 -17039859 + RMER15 LTR ERVL 397 510 -65 1 1618 374 175 0 0 chr5 135497425 135497488 -17039771 + ID_B1 SINE B4 129 191 -33 1 1618 387 0 0 0 chr5 135497501 135497544 -17039715 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1618 634 248 21 0 chr5 135497544 135497685 -17039574 + RSINE1 SINE B4 18 161 -4 1 1618 21 0 0 0 chr5 135497696 135497717 -17039542 + AT_rich Low_complexity Low_complexity 1 21 0 1 1618 300 27 0 0 chr5 135498005 135498042 -17039217 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1618 443 18 0 18 chr5 135498325 135498382 -17038877 + (TATG)n Simple_repeat Simple_repeat 3 58 0 1 1618 531 283 0 111 chr5 135498567 135498681 -17038578 - RSINE1 SINE B4 -3 162 64 1 1618 207 0 0 0 chr5 135498681 135498704 -17038555 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 1 1618 648 192 136 0 chr5 135498705 135498830 -17038429 - B1_Mus1 SINE Alu -6 142 1 1 1618 531 283 0 111 chr5 135498830 135498884 -17038375 - RSINE1 SINE B4 -102 63 11 1 1618 368 236 78 0 chr5 135498942 135499050 -17038209 + B1F SINE Alu 1 124 -3 1 1618 466 295 33 0 chr5 135500783 135500927 -17036332 - B1F SINE Alu 0 149 1 1 1618 286 348 0 33 chr5 135501521 135501643 -17035616 + ID_B1 SINE B4 86 203 -21 2 1618 207 139 0 0 chr5 135501848 135501884 -17035375 + (TCC)n Simple_repeat Simple_repeat 1 36 0 3 1618 222 324 0 29 chr5 135502274 135502344 -17034915 - PB1D10 SINE Alu -22 95 28 4 1618 534 31 0 0 chr5 135502375 135502439 -17034820 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 5 1618 369 62 0 0 chr5 135502439 135502487 -17034772 + (TC)n Simple_repeat Simple_repeat 2 49 0 6 1618 575 296 36 40 chr5 135502502 135502727 -17034532 - ID_B1 SINE B4 0 224 1 7 1618 406 320 0 30 chr5 135503010 135503142 -17034117 + ID_B1 SINE B4 94 221 -3 8 1618 1000 90 30 0 chr5 135503172 135503306 -17033953 + B1_Mur4 SINE Alu 1 138 -12 9 1618 235 191 162 0 chr5 135503312 135503380 -17033879 + B3 SINE B2 138 216 0 1 1618 1533 42 12 0 chr5 135503404 135503710 -17033549 + ZP3AR Satellite Satellite 1 309 0 1 1618 462 179 39 0 chr5 135503710 135503788 -17033471 + ID4_ SINE ID 1 81 -2 1 1618 580 236 16 0 chr5 135504013 135504140 -17033119 + ID_B1 SINE B4 82 210 -14 1 1618 1235 75 0 6 chr5 135504140 135504313 -17032946 + (GAAA)n Simple_repeat Simple_repeat 4 175 0 1 1618 998 154 122 19 chr5 135504464 135504669 -17032590 - URR1A DNA MER1_type 0 226 1 1 1618 441 191 0 41 chr5 135505335 135505433 -17031826 - RSINE1 SINE B4 -68 97 4 1 1618 399 289 149 0 chr5 135505519 135505640 -17031619 - RSINE1 SINE B4 -24 141 3 1 1618 289 278 33 11 chr5 135505683 135505774 -17031485 - PB1D9 SINE Alu -2 118 26 1 1618 430 241 0 0 chr5 135505804 135505887 -17031372 - ID4 SINE ID 0 83 1 1 1618 1419 40 16 8 chr5 135505887 135506113 -17031146 - ZP3AR Satellite Satellite -11 227 1 2 1618 592 226 30 0 chr5 135506110 135506243 -17031016 - B3A SINE B2 -10 188 52 2 1618 312 27 0 0 chr5 135506401 135506438 -17030821 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 2 1618 1686 27 0 0 chr5 135506474 135506662 -17030597 + B2_Mm1a SINE B2 4 191 -2 2 1618 308 213 93 0 chr5 135506747 135506822 -17030437 + PB1D10 SINE Alu 35 116 -1 2 1618 285 75 0 0 chr5 135506822 135506862 -17030397 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 2 1618 1088 205 19 5 chr5 135507163 135507379 -17029880 - ID_B1 SINE B4 -5 219 1 2 1618 350 289 77 0 chr5 135507504 135507608 -17029651 + PB1D7 SINE Alu 5 116 -4 2 1618 1671 16 16 5 chr5 135507617 135507808 -17029451 + B2_Mm1a SINE B2 1 193 0 2 1618 1145 59 0 0 chr5 135507966 135508101 -17029158 + B1_Mus2 SINE Alu 2 136 -11 2 1618 228 43 21 42 chr5 135508101 135508149 -17029110 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 3 1618 507 123 0 0 chr5 135508183 135508264 -17028995 + (TC)n Simple_repeat Simple_repeat 2 82 0 3 1618 433 348 0 19 chr5 135508264 135508425 -17028834 - RSINE1 SINE B4 -6 159 2 3 1618 292 205 0 161 chr5 135508594 135508687 -17028572 - B4 SINE B4 -212 80 3 3 1618 525 98 0 0 chr5 135508769 135508851 -17028408 - L1Md_F2 LINE L1 0 6582 6501 3 1618 216 0 0 0 chr5 135508854 135508878 -17028381 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1618 782 102 92 23 chr5 135508878 135509008 -17028251 - B1_Mur4 SINE Alu -11 139 1 3 1618 505 270 109 150 chr5 135509600 135509614 -17027645 + MTE2a LTR MaLR 2 13 -406 3 1618 686 177 96 8 chr5 135509614 135509739 -17027520 - B1_Mur4 SINE Alu -14 136 1 3 1618 586 260 113 96 chr5 135509739 135509878 -17027381 + MTE2a LTR MaLR 14 191 -228 3 1618 553 205 41 33 chr5 135509878 135509999 -17027260 - B3 SINE B2 -93 123 2 3 1618 586 260 113 96 chr5 135509999 135510158 -17027101 + MTE2a LTR MaLR 192 397 -22 3 1618 309 191 63 0 chr5 135510490 135510553 -17026706 - ID SINE ID -143 81 15 4 1618 734 230 15 68 chr5 135510583 135510788 -17026471 - B3A SINE B2 0 198 5 4 1618 386 272 25 50 chr5 135510793 135510913 -17026346 - PB1D10 SINE Alu 0 117 1 4 1618 584 278 0 14 chr5 135510940 135511086 -17026173 + ID_B1 SINE B4 81 224 0 4 1618 701 188 0 0 chr5 135511096 135511213 -17026046 + RSINE1 SINE B4 8 124 -41 4 1618 880 252 71 43 chr5 135512052 135512334 -17024925 + B4A SINE B4 2 291 -1 4 1618 426 243 26 18 chr5 135512550 135512663 -17024596 + PB1D10 SINE Alu 4 117 0 4 1618 245 302 0 138 chr5 135513617 135513740 -17023519 + ID_B1 SINE B4 84 189 -35 4 1618 242 233 17 0 chr5 135513822 135513882 -17023377 + (TGGA)n Simple_repeat Simple_repeat 4 64 0 4 1618 917 96 50 22 chr5 135514325 135514464 -17022795 + B1_Mur4 SINE Alu 4 146 -4 4 1618 195 129 0 0 chr5 135514471 135514502 -17022757 + (AGGGGG)n Simple_repeat Simple_repeat 2 32 0 5 1618 671 205 263 0 chr5 135514559 135514730 -17022529 - B3 SINE B2 0 216 1 5 1618 385 274 51 22 chr5 135514790 135514928 -17022331 - RSINE1 SINE B4 -21 144 3 5 1618 292 257 140 19 chr5 135514928 135515026 -17022233 - ID_B1 SINE B4 -40 184 74 5 1618 815 282 9 23 chr5 135515604 135515825 -17021434 + ID_B1 SINE B4 2 219 -5 5 1618 360 262 11 18 chr5 135517202 135517314 -17019945 + ID_B1 SINE B4 1 110 -182 5 1618 31 26 0 0 chr5 135517346 135517384 -17019875 + AT_rich Low_complexity Low_complexity 1 38 0 5 1618 483 219 37 104 chr5 135518699 135518862 -17018397 + B4A SINE B4 73 224 -68 5 1618 1101 36 0 0 chr5 135518725 135518865 -17018394 + B1_Mus1 SINE Alu 9 148 0 5 1618 343 200 176 40 chr5 135518966 135519091 -17018168 + RSINE1 SINE B4 23 164 -1 5 1618 578 191 8 0 chr5 135519091 135519217 -17018042 + (CA)n Simple_repeat Simple_repeat 1 127 0 5 1618 345 232 11 89 chr5 135519217 135519307 -17017952 + HAL1-3A_ME LINE L1 1976 2058 -800 6 1618 1582 32 27 0 chr5 135519379 135519565 -17017694 + B2_Mm1t SINE B2 2 192 -1 6 1618 1199 61 0 0 chr5 135519577 135519724 -17017535 + B1_Mus1 SINE Alu 2 148 0 6 1618 220 218 0 18 chr5 135519724 135519780 -17017479 + A-rich Low_complexity Low_complexity 2 56 0 6 1618 182 77 0 71 chr5 135519789 135519831 -17017428 + (A)n Simple_repeat Simple_repeat 1 39 0 6 1618 890 111 198 0 chr5 135519834 135519996 -17017263 + B2_Mm2 SINE B2 2 195 0 6 1618 790 287 14 5 chr5 135520037 135520247 -17017012 + ID_B1 SINE B4 8 219 -5 6 1618 526 257 61 79 chr5 135520256 135520421 -17016838 + RSINE1 SINE B4 4 165 0 6 1618 724 220 0 7 chr5 135520441 135520583 -17016676 - B1_Mur2 SINE Alu -5 144 4 6 1618 582 240 93 147 chr5 135520769 135521109 -17016150 - MTD LTR MaLR -3 356 4 6 1618 755 225 43 6 chr5 135521112 135521273 -17015986 + B3A SINE B2 10 176 -22 7 1618 714 104 0 0 chr5 135521269 135521375 -17015884 - B2_Mm2 SINE B2 -89 106 1 7 1618 846 227 132 9 chr5 135522054 135522267 -17014992 - B4A SINE B4 -2 290 53 7 1618 180 0 0 0 chr5 135522332 135522352 -17014907 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 7 1618 299 171 90 0 chr5 135522354 135522434 -17014825 - B1_Mur2 SINE Alu -9 111 14 7 1618 327 200 53 0 chr5 135522680 135522755 -17014504 - ID_B1 SINE B4 -2 222 144 7 1618 23 33 0 0 chr5 135522759 135522789 -17014470 + AT_rich Low_complexity Low_complexity 1 30 0 7 1618 762 217 25 45 chr5 135522793 135522991 -17014268 - B2_Mm2 SINE B2 0 195 2 7 1618 926 223 29 19 chr5 135523020 135523230 -17014029 - B3 SINE B2 -2 214 3 7 1618 27 0 0 0 chr5 135523244 135523271 -17013988 + AT_rich Low_complexity Low_complexity 1 27 0 7 1618 324 375 21 0 chr5 135523420 135523564 -17013695 - ID_B1 SINE B4 -77 147 1 8 1618 506 217 85 0 chr5 135523574 135523680 -17013579 - PB1D7 SINE Alu -5 115 1 8 1618 263 274 93 19 chr5 135523733 135523841 -17013418 - PB1D10 SINE Alu -1 116 1 8 1618 1650 21 21 0 chr5 135523938 135524126 -17013133 + B2_Mm1a SINE B2 2 193 0 8 1618 346 274 0 0 chr5 135524133 135524217 -17013042 - PB1D10 SINE Alu -13 104 21 8 1618 263 257 96 17 chr5 135525152 135525213 -17012046 - BC1_Mm scRNA scRNA -28 124 60 8 1618 313 229 29 0 chr5 135525213 135525283 -17011976 - ID4 SINE ID -11 72 1 8 1618 263 257 96 17 chr5 135525283 135525336 -17011923 - BC1_Mm scRNA scRNA -93 59 1 8 1618 1446 62 4 14 chr5 135525336 135525660 -17011599 - ZP3AR Satellite Satellite -11 373 1 8 1618 767 259 70 0 chr5 135527218 135527403 -17009856 - B3 SINE B2 -17 199 2 8 1618 574 148 153 23 chr5 135527421 135527552 -17009707 - B1_Mur1 SINE Alu -1 148 1 8 1618 1390 72 22 16 chr5 135527591 135527776 -17009483 + B2_Mm2 SINE B2 2 187 -8 9 1618 983 100 0 0 chr5 135527779 135527919 -17009340 + B1_Mm SINE Alu 8 147 0 9 1618 527 301 15 0 chr5 135527936 135528072 -17009187 - B3A SINE B2 -60 138 1 9 1618 24 0 0 0 chr5 135528372 135528396 -17008863 + GC_rich Low_complexity Low_complexity 1 24 0 9 1619 523 217 0 42 chr5 135528888 135529008 -17008251 - PB1D10 SINE Alu 0 117 3 9 1619 1128 22 67 0 chr5 135530588 135530723 -17006536 + B1_Mus2 SINE Alu 1 144 -3 9 1619 609 14 0 0 chr5 135530742 135530812 -17006447 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 9 1619 1297 221 32 11 chr5 135532418 135532702 -17004557 - B4 SINE B4 -2 290 1 9 1619 504 213 0 53 chr5 135533725 135533839 -17003420 + PB1D10 SINE Alu 5 112 -5 9 1619 1045 210 29 0 chr5 135533886 135534091 -17003168 + B3 SINE B2 2 212 -4 9 1619 213 245 0 0 chr5 135534091 135534140 -17003119 + A-rich Low_complexity Low_complexity 1 49 0 1 1619 853 115 7 3 chr5 135534174 135534308 -17002951 - B1_Mus2 SINE Alu -6 141 15 1 1619 1366 82 16 5 chr5 135534361 135534546 -17002713 + B2_Mm2 SINE B2 2 188 -7 1 1619 343 244 169 23 chr5 135534708 135534838 -17002421 - B1F2 SINE Alu 0 149 1 1 1619 202 114 68 0 chr5 135534913 135534957 -17002302 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 1 1619 623 191 43 17 chr5 135535499 135535616 -17001643 + PB1D9 SINE Alu 1 120 0 1 1619 441 0 0 0 chr5 135535620 135535669 -17001590 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1619 505 179 76 17 chr5 135535680 135535799 -17001460 - ID_B1 SINE B4 -9 215 90 1 1619 455 180 99 0 chr5 135535850 135535961 -17001298 + B3A SINE B2 1 122 -76 1 1619 310 363 13 82 chr5 135536156 135536219 -17001040 - RSINE1 SINE B4 -12 153 99 1 1619 1385 99 16 0 chr5 135536219 135536410 -17000849 + B2_Mm2 SINE B2 1 194 -1 1 1619 310 363 13 82 chr5 135536410 135536505 -17000754 - RSINE1 SINE B4 -67 98 6 1 1619 482 270 9 0 chr5 135536758 135536873 -17000386 + PB1D10 SINE Alu 1 116 -1 1 1619 360 0 0 0 chr5 135537352 135537392 -16999867 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1619 292 300 12 0 chr5 135537418 135537498 -16999761 - RSINE1 SINE B4 -41 124 44 1 1619 295 223 198 21 chr5 135537590 135537686 -16999573 + PB1D10 SINE Alu 5 117 -3 1 1619 1496 68 16 5 chr5 135537692 135537885 -16999374 + B2_Mm2 SINE B2 1 195 0 1 1619 664 256 46 73 chr5 135537960 135538179 -16999080 - B3 SINE B2 0 216 4 1 1619 395 216 0 0 chr5 135538342 135538416 -16998843 + ID4 SINE ID 9 82 -1 1 1619 241 26 53 0 chr5 135538826 135538864 -16998395 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1619 505 292 21 0 chr5 135538995 135539139 -16998120 + ID_B1 SINE B4 77 223 -1 1 1619 538 319 7 0 chr5 135539285 135539429 -16997830 + ZP3AR Satellite Satellite 47 191 -21 1 1619 390 21 0 0 chr5 135539609 135539656 -16997603 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1619 232 242 91 0 chr5 135541300 135541366 -16995893 + ID4_ SINE ID 4 75 -8 1 1619 383 273 64 0 chr5 135542003 135542113 -16995146 + ID_B1 SINE B4 2 118 -106 1 1619 350 278 21 0 chr5 135542114 135542211 -16995048 - PB1D10 SINE Alu -7 110 12 1 1619 485 267 19 0 chr5 135542652 135542757 -16994502 + PB1D10 SINE Alu 5 111 -6 1 1619 516 237 89 0 chr5 135542765 135542900 -16994359 + B1F2 SINE Alu 3 149 0 1 1619 400 269 0 46 chr5 135542901 135543010 -16994249 + RSINE1 SINE B4 2 105 -60 1 1619 286 352 13 70 chr5 135543473 135543597 -16993662 + ID_B1 SINE B4 42 156 -68 1 1619 645 178 53 0 chr5 135543597 135543728 -16993531 + B1_Mur2 SINE Alu 3 140 -9 1 1619 582 303 10 75 chr5 135543766 135543966 -16993293 + B3A SINE B2 2 188 -10 1 1619 493 243 230 0 chr5 135543975 135544123 -16993136 + B3A SINE B2 1 182 -16 1 1619 499 329 64 9 chr5 135544277 135544495 -16992764 + B4A SINE B4 2 231 -61 1 1619 981 120 14 21 chr5 135544495 135544640 -16992619 + B1_Mur4 SINE Alu 1 144 -6 1 1619 1264 27 0 14 chr5 135544645 135544793 -16992466 + B1_Mm SINE Alu 2 147 0 1 1619 258 56 0 0 chr5 135544870 135544906 -16992353 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1619 325 289 30 90 chr5 135544921 135544951 -16992308 + ID_B1 SINE B4 61 217 -7 1 1619 618 219 36 0 chr5 135544951 135545088 -16992171 + B1_Mur4 SINE Alu 2 143 -7 1 1619 1146 108 51 0 chr5 135545085 135545261 -16991998 + B2_Mm2 SINE B2 11 195 0 1 1619 517 252 8 32 chr5 135545373 135545496 -16991763 + RSINE1 SINE B4 2 121 -44 1 1619 258 56 0 0 chr5 135545499 135545535 -16991724 + (CAAT)n Simple_repeat Simple_repeat 1 36 0 1 1619 1273 41 0 0 chr5 135545701 135545848 -16991411 + B1_Mm SINE Alu 1 147 0 1 1619 667 133 16 6 chr5 135545914 135546050 -16991209 - B1_Mus1 SINE Alu 0 150 10 1 1619 258 32 0 0 chr5 135546146 135546177 -16991082 + (GTTTG)n Simple_repeat Simple_repeat 5 35 0 1 1619 907 140 0 0 chr5 135546177 135546309 -16990950 - B1_Mur4 SINE Alu -12 138 7 1 1619 857 218 43 91 chr5 135546318 135546550 -16990709 - ID_B1 SINE B4 0 224 4 1 1619 588 225 9 0 chr5 135546686 135546797 -16990462 - PB1D9 SINE Alu -7 113 2 1 1619 873 161 0 0 chr5 135546971 135547108 -16990151 + B1_Mur4 SINE Alu 1 137 -13 1 1619 800 100 131 0 chr5 135547509 135547639 -16989620 - B1_Mus1 SINE Alu 0 148 2 1 1619 638 162 23 23 chr5 135547642 135547775 -16989484 + URR1B DNA MER1_type 93 225 0 1 1619 254 280 92 9 chr5 135547842 135547947 -16989312 - B1F SINE Alu -3 146 1 1 1619 662 243 39 6 chr5 135548091 135548269 -16988990 - ID_B1 SINE B4 -21 203 20 1 1619 219 246 33 0 chr5 135548272 135548333 -16988926 - PB1D10 SINE Alu -32 85 23 1 1619 275 240 73 24 chr5 135548775 135548899 -16988360 - L2c LINE L2 -6 3381 3252 1 1619 216 238 0 0 chr5 135549661 135549703 -16987556 + (CGG)n Simple_repeat Simple_repeat 2 43 0 1 1619 474 259 66 15 chr5 135550446 135550583 -16986676 - ID_B1 SINE B4 0 224 81 1 1619 413 244 178 58 chr5 135550634 135550808 -16986451 - B3A SINE B2 0 198 4 1 1619 192 77 0 0 chr5 135550823 135550849 -16986410 + (CAT)n Simple_repeat Simple_repeat 1 26 0 1 1619 490 216 10 20 chr5 135550849 135550948 -16986311 - PB1D10 SINE Alu -19 98 1 1 1619 952 198 94 20 chr5 135551144 135551345 -16985914 - B3 SINE B2 0 216 1 1 1619 484 268 166 21 chr5 135551372 135551559 -16985700 - B3 SINE B2 0 216 3 1 1619 456 278 60 46 chr5 135551615 135551766 -16985493 - RSINE1 SINE B4 0 165 13 1 1619 738 206 14 0 chr5 135551818 135551959 -16985300 - ID_B1 SINE B4 -1 223 81 1 1619 422 273 10 88 chr5 135551983 135552167 -16985092 - ID_B1 SINE B4 -41 251 76 1 1619 311 0 0 25 chr5 135552697 135552737 -16984522 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1619 205 286 48 0 chr5 135552739 135552802 -16984457 + MIRc SINE MIR 164 229 -39 1 1619 35 41 0 0 chr5 135554015 135554064 -16983195 + GC_rich Low_complexity Low_complexity 1 49 0 1 1619 202 55 0 53 chr5 135554115 135554153 -16983106 + (CTCCG)n Simple_repeat Simple_repeat 1 36 0 1 1619 186 227 104 15 chr5 135554467 135554534 -16982725 - MIRc SINE MIR -34 234 162 1 1619 292 216 78 22 chr5 135554543 135554633 -16982626 + MIRm SINE MIR 80 174 -102 1 1619 398 242 0 32 chr5 135554988 135555082 -16982177 + PB1D10 SINE Alu 26 116 -1 1 1619 1203 61 0 0 chr5 135555170 135555317 -16981942 + B1_Mus2 SINE Alu 1 147 0 1 1619 348 331 122 17 chr5 135555338 135555510 -16981749 + B4 SINE B4 89 278 -14 1 1619 353 39 20 0 chr5 135555555 135555606 -16981653 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1619 221 356 23 0 chr5 135555616 135555703 -16981556 - L2c LINE L2 -201 3186 3098 1 1619 276 282 26 0 chr5 135555750 135555828 -16981431 - PB1D7 SINE Alu -37 83 4 1 1619 725 220 14 14 chr5 135556163 135556306 -16980953 + B3A SINE B2 1 143 -55 1 1619 649 134 0 0 chr5 135556341 135556438 -16980821 - B1_Mur4 SINE Alu -45 105 9 1 1619 1202 154 41 14 chr5 135556854 135557120 -16980139 - ZP3AR Satellite Satellite -21 273 1 1 1619 1277 61 81 38 chr5 135557294 135557480 -16979779 - B2_Mm2 SINE B2 -1 194 1 1 1619 626 140 19 0 chr5 135557539 135557646 -16979613 - B3 SINE B2 -106 110 2 1 1619 655 137 92 71 chr5 135557648 135557789 -16979470 - B1_Mur1 SINE Alu -1 148 5 1 1619 329 260 10 39 chr5 135558049 135558153 -16979106 + PB1D10 SINE Alu 15 115 -2 1 1619 358 228 284 0 chr5 135558153 135558280 -16978979 + RSINE1 SINE B4 3 165 0 1 1619 948 156 0 0 chr5 135558286 135558466 -16978793 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1619 705 203 0 61 chr5 135558611 135558758 -16978501 + B1_Mur4 SINE Alu 5 142 -8 1 1619 217 27 53 26 chr5 135558760 135558798 -16978461 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1619 500 190 186 24 chr5 135558941 135559065 -16978194 + RSINE1 SINE B4 4 147 -18 1 1619 513 177 24 110 chr5 135559112 135559239 -16978020 + RSINE1 SINE B4 11 126 -39 1 1619 447 19 0 0 chr5 135559254 135559306 -16977953 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1619 494 229 0 146 chr5 135559440 135559456 -16977803 - ID_B1 SINE B4 -13 211 200 1 1619 2995 97 12 12 chr5 135559456 135559863 -16977396 + MTB_Mm LTR MaLR 1 407 0 1 1619 746 176 0 75 chr5 135559863 135559993 -16977266 - B1_Mur1 SINE Alu -24 125 1 1 1619 494 229 0 146 chr5 135559993 135560010 -16977249 - ID_B1 SINE B4 -25 199 72 1 1619 561 272 91 30 chr5 135560022 135560253 -16977006 - RLTR42-int LTR ERVK -4122 1400 1156 1 1619 231 259 155 0 chr5 135560436 135560494 -16976765 + B3 SINE B2 20 86 -130 1 1619 261 250 0 0 chr5 135560506 135560582 -16976677 + GA-rich Low_complexity Low_complexity 3 78 0 1 1619 899 199 129 16 chr5 135560596 135560790 -16976469 - B3 SINE B2 0 216 1 1 1619 275 0 0 28 chr5 135560928 135560964 -16976295 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1619 1070 110 0 33 chr5 135560964 135561104 -16976155 - B1_Mur4 SINE Alu -13 137 1 1 1619 587 202 8 39 chr5 135561278 135561407 -16975852 - RSINE1 SINE B4 -38 127 3 1 1619 314 310 66 122 chr5 135561465 135561598 -16975661 - B4 SINE B4 -87 205 80 1 1619 808 164 42 14 chr5 135561598 135561740 -16975519 - B1_Mur4 SINE Alu -2 148 3 2 1619 314 310 66 122 chr5 135561740 135561819 -16975440 - B4 SINE B4 -213 79 5 1 1619 696 45 0 0 chr5 135562151 135562239 -16975020 + (TTTC)n Simple_repeat Simple_repeat 4 91 0 2 1619 216 97 0 0 chr5 135562248 135562279 -16974980 + (TCC)n Simple_repeat Simple_repeat 3 33 0 2 1619 727 104 0 0 chr5 135562285 135562391 -16974868 - B1_Mus2 SINE Alu 0 147 42 2 1619 416 333 0 0 chr5 135562394 135562561 -16974698 + C-rich Low_complexity Low_complexity 1 167 0 2 1619 292 182 0 0 chr5 135562570 135562625 -16974634 - B1_Mus1 SINE Alu -93 55 1 2 1619 755 263 28 23 chr5 135562647 135562861 -16974398 - ID_B1 SINE B4 -9 215 1 2 1619 262 222 0 31 chr5 135563046 135563111 -16974148 + PB1D10 SINE Alu 55 117 0 2 1619 417 177 72 65 chr5 135563690 135563719 -16973540 - B1_Mur3 SINE Alu 0 149 113 2 1619 1018 135 6 6 chr5 135563719 135563898 -16973361 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2 1619 539 177 72 65 chr5 135563898 135564007 -16973252 - PB1D9 SINE Alu -2 118 10 2 1619 685 239 19 12 chr5 135564178 135564339 -16972920 + RSINE1 SINE B4 4 165 0 2 1619 251 343 63 34 chr5 135564186 135564361 -16972898 + B3A SINE B2 11 190 -8 2 1619 608 264 68 39 chr5 135564361 135564566 -16972693 - B3 SINE B2 -5 211 1 2 1619 956 167 0 0 chr5 135564596 135564740 -16972519 + B1_Mur4 SINE Alu 1 144 -6 2 1619 256 102 0 39 chr5 135564745 135564796 -16972463 + (GA)n Simple_repeat Simple_repeat 1 49 0 2 1619 308 143 14 0 chr5 135564785 135564855 -16972404 + GA-rich Low_complexity Low_complexity 3 73 0 2 1619 422 238 96 24 chr5 135564878 135565003 -16972256 + ID_B1 SINE B4 84 217 -7 2 1619 401 145 0 14 chr5 135565014 135565084 -16972175 + B3A SINE B2 2 70 -128 2 1619 409 174 47 0 chr5 135565059 135565091 -16972168 + B1_Mur4 SINE Alu 52 87 -63 2 1619 285 29 0 0 chr5 135565091 135565125 -16972134 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1619 409 174 47 0 chr5 135565125 135565178 -16972081 + B1_Mur4 SINE Alu 88 140 -10 2 1619 423 0 0 0 chr5 135565178 135565225 -16972034 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1619 445 231 28 28 chr5 135566825 135566920 -16970339 + PB1D7 SINE Alu 12 109 -11 2 1619 188 35 35 0 chr5 135566920 135566949 -16970310 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1619 831 242 56 23 chr5 135566949 135567165 -16970094 + ID_B1 SINE B4 2 224 0 2 1619 547 157 8 13 chr5 135567190 135567308 -16969951 + B1_Mur1 SINE Alu 7 147 -2 2 1619 288 0 0 0 chr5 135567389 135567421 -16969838 + (CCA)n Simple_repeat Simple_repeat 1 32 0 2 1619 474 313 77 17 chr5 135567473 135567707 -16969552 - MIRb SINE MIR -3 265 18 2 1619 549 219 93 8 chr5 135568458 135568587 -16968672 - RSINE1 SINE B4 -7 158 19 2 1619 223 255 31 41 chr5 135569202 135569300 -16967959 + (TCTCTG)n Simple_repeat Simple_repeat 1 97 0 2 1619 227 250 14 0 chr5 135569225 135569297 -16967962 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 2 1619 255 192 0 0 chr5 135569300 135569373 -16967886 + CT-rich Low_complexity Low_complexity 1 73 0 2 1619 806 142 118 0 chr5 135569373 135569500 -16967759 - B1_Mus1 SINE Alu -5 143 2 2 1619 335 296 6 58 chr5 135569503 135569524 -16967735 + polypyrimidine Low_complexity Low_complexity 146 166 0 2 1619 1267 41 0 0 chr5 135569524 135569671 -16967588 - B1_Mus2 SINE Alu 0 147 1 2 1619 335 296 6 58 chr5 135569671 135569821 -16967438 + CT-rich Low_complexity Low_complexity 5 145 0 2 1619 1347 148 9 26 chr5 135570216 135570445 -16966814 + URR1B DNA MER1_type 1 225 0 2 1619 391 255 106 0 chr5 135570449 135570543 -16966716 - PB1D9 SINE Alu -15 105 2 2 1619 691 175 102 19 chr5 135570627 135570784 -16966475 - B3A SINE B2 -26 172 3 2 1619 204 40 0 0 chr5 135570813 135570838 -16966421 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1619 267 275 53 42 chr5 135570916 135571011 -16966248 - ID_B1 SINE B4 0 224 129 2 1619 270 208 0 111 chr5 135570932 135571013 -16966246 - PB1D10 SINE Alu 0 117 46 2 1619 445 222 116 23 chr5 135571143 135571272 -16965987 - B1F1 SINE Alu -8 141 1 2 1619 582 122 0 0 chr5 135571482 135571580 -16965679 + (TCCC)n Simple_repeat Simple_repeat 3 100 0 2 1619 859 200 0 0 chr5 135571583 135571723 -16965536 - B1_Mur2 SINE Alu -9 140 1 2 1619 240 303 15 29 chr5 135571724 135571792 -16965467 + MER21B LTR ERV1 182 248 -615 2 1619 649 318 6 17 chr5 135571868 135572041 -16965218 + ID_B1 SINE B4 2 172 -52 2 1619 442 293 16 47 chr5 135571955 135572084 -16965175 + B1F SINE Alu 9 133 -16 2 1619 201 121 0 0 chr5 135572107 135572140 -16965119 + (CTTG)n Simple_repeat Simple_repeat 4 36 0 2 1619 285 29 0 0 chr5 135572168 135572202 -16965057 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1619 354 325 39 16 chr5 135572248 135572376 -16964883 - RSINE1 SINE B4 -28 137 7 2 1619 1003 138 21 0 chr5 135572538 135572683 -16964576 + B1_Mus1 SINE Alu 1 148 0 2 1619 1389 83 5 25 chr5 135572686 135572883 -16964376 + B2_Mm1a SINE B2 1 193 0 2 1619 201 94 0 0 chr5 135572903 135572935 -16964324 + (CCA)n Simple_repeat Simple_repeat 1 32 0 2 1619 264 314 98 0 chr5 135573020 135573122 -16964137 + PB1D10 SINE Alu 6 117 0 2 1619 467 133 40 0 chr5 135573150 135573225 -16964034 + PB1D9 SINE Alu 28 105 -15 2 1619 1020 144 0 0 chr5 135573271 135573444 -16963815 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 2 1619 263 214 18 0 chr5 135573794 135573850 -16963409 + B1F1 SINE Alu 1 57 -92 2 1619 261 0 0 0 chr5 135573868 135573897 -16963362 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1619 183 235 0 0 chr5 135573920 135573971 -16963288 + (TGGG)n Simple_repeat Simple_repeat 2 52 0 2 1619 1836 162 9 32 chr5 135574046 135574391 -16962868 - RLTR19A LTR ERVK 0 496 160 2 1619 919 236 15 0 chr5 135574592 135574791 -16962468 - ID_B1 SINE B4 -22 202 1 2 1619 874 160 21 0 chr5 135574846 135574990 -16962269 - B1_Mus2 SINE Alu 0 147 1 2 1619 220 305 170 31 chr5 135575046 135575205 -16962054 - B2_Mm1a SINE B2 -2 191 11 2 1619 650 161 8 8 chr5 135575090 135575209 -16962050 - RSINE1 SINE B4 -39 126 8 2 1619 497 291 16 0 chr5 135575337 135575464 -16961795 - B1F SINE Alu -15 134 6 2 1619 271 346 45 27 chr5 135575367 135575477 -16961782 - B4A SINE B4 -100 192 81 2 1619 741 156 23 0 chr5 135575510 135575638 -16961621 + B1_Mus2 SINE Alu 9 139 -8 2 1619 384 22 0 0 chr5 135575638 135575683 -16961576 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1619 495 0 0 0 chr5 135575683 135575737 -16961522 + (GA)n Simple_repeat Simple_repeat 2 56 0 2 1619 1429 94 16 0 chr5 135575765 135575956 -16961303 + B2_Mm2 SINE B2 2 195 0 2 1619 1185 42 14 0 chr5 135576139 135576283 -16960976 - B1_Mus2 SINE Alu -1 146 1 2 1619 227 234 82 47 chr5 135576328 135576413 -16960846 + MIRc SINE MIR 107 194 -74 2 1619 966 251 14 5 chr5 135576445 135576653 -16960606 - B3 SINE B2 -2 214 5 2 1619 23 0 0 0 chr5 135576728 135576751 -16960508 + AT_rich Low_complexity Low_complexity 1 23 0 2 1619 324 48 0 0 chr5 135576751 135576793 -16960466 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1619 637 212 7 43 chr5 135576797 135576935 -16960324 - RSINE1 SINE B4 -31 134 2 2 1619 245 235 59 0 chr5 135576971 135577039 -16960220 - L1MB7 LINE L1 -69 6115 6044 2 1619 309 244 153 30 chr5 135577069 135577098 -16960161 + B1F SINE Alu 2 148 -1 2 1619 475 168 98 10 chr5 135577098 135577200 -16960059 + ID_B1 SINE B4 113 223 -1 2 1619 219 69 0 0 chr5 135577336 135577365 -16959894 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2 1619 1099 93 0 0 chr5 135577365 135577504 -16959755 - B1_Mus1 SINE Alu -9 139 1 2 1619 569 228 246 23 chr5 135577507 135577682 -16959577 - B3 SINE B2 0 216 3 2 1619 507 319 13 0 chr5 135577724 135577881 -16959378 - RSINE1 SINE B4 0 165 7 2 1619 180 0 0 0 chr5 135577955 135577975 -16959284 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1619 268 160 0 0 chr5 135577975 135578017 -16959242 - PB1D7 SINE Alu -10 110 69 2 1619 254 269 71 71 chr5 135578017 135578036 -16959223 - ID_B1 SINE B4 -11 213 157 2 1619 1255 34 7 0 chr5 135578036 135578182 -16959077 - B1_Mus2 SINE Alu 0 147 1 2 1619 254 269 71 71 chr5 135578182 135578246 -16959013 - ID_B1 SINE B4 -68 156 85 2 1619 274 238 25 0 chr5 135578378 135578458 -16958801 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 2 1619 1147 52 0 0 chr5 135578474 135578609 -16958650 + B1_Mus1 SINE Alu 1 135 -13 2 1619 333 62 0 0 chr5 135578609 135578657 -16958602 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 2 1619 823 174 21 0 chr5 135578674 135578818 -16958441 + B1_Mur1 SINE Alu 2 148 -1 2 1619 259 0 0 89 chr5 135578818 135578863 -16958396 + (GGGAGA)n Simple_repeat Simple_repeat 3 43 0 2 1619 1336 247 28 12 chr5 135578878 135579202 -16958057 + MTE2b LTR MaLR 51 379 0 2 1619 221 242 0 11 chr5 135579259 135579351 -16957908 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 2 1619 391 323 30 6 chr5 135579354 135579522 -16957737 + (TGGA)n Simple_repeat Simple_repeat 2 173 0 2 1619 728 179 7 0 chr5 135579613 135579764 -16957495 + (TGGA)n Simple_repeat Simple_repeat 2 153 0 2 1619 839 157 0 41 chr5 135579873 135580019 -16957240 - B1_Mur2 SINE Alu -8 141 2 2 1619 345 47 0 0 chr5 135580565 135580608 -16956651 + (GA)n Simple_repeat Simple_repeat 1 43 0 2 1619 514 196 122 0 chr5 135580623 135580730 -16956529 - RSINE1 SINE B4 -41 124 5 2 1619 984 206 15 15 chr5 135580770 135580972 -16956287 - ID_B1 SINE B4 -20 204 3 2 1619 238 84 55 27 chr5 135581039 135581112 -16956147 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 3 1619 231 98 0 47 chr5 135581114 135581157 -16956102 - B1_Mm SINE Alu 0 147 107 3 1619 224 279 0 0 chr5 135581141 135581202 -16956057 + ID SINE ID 22 82 -142 3 1619 783 165 0 14 chr5 135581617 135581758 -16955501 + B1_Mus2 SINE Alu 9 147 0 3 1619 241 308 97 58 chr5 135581623 135581778 -16955481 + MT2B2 LTR ERVL 179 339 -245 3 1619 212 122 0 47 chr5 135581778 135581821 -16955438 + GA-rich Low_complexity Low_complexity 3 43 0 3 1619 249 150 0 0 chr5 135582029 135582069 -16955190 - ID_B1 SINE B4 -45 179 140 3 1619 447 51 0 49 chr5 135582069 135582151 -16955108 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 3 1619 429 345 7 0 chr5 135582151 135582293 -16954966 - RSINE1 SINE B4 -13 152 10 3 1619 450 132 0 0 chr5 135582307 135582383 -16954876 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 3 1619 382 252 48 0 chr5 135582402 135582505 -16954754 - ID_B1 SINE B4 -79 145 38 3 1619 200 35 35 0 chr5 135582505 135582534 -16954725 + (CCCCAG)n Simple_repeat Simple_repeat 3 32 0 3 1619 498 238 175 0 chr5 135583580 135583706 -16953553 - B1F SINE Alu -1 148 1 3 1619 484 220 161 0 chr5 135584461 135584579 -16952680 - B1F SINE Alu -1 148 12 3 1619 362 242 45 61 chr5 135584926 135585058 -16952201 + RSINE1 SINE B4 3 132 -33 3 1619 305 318 23 53 chr5 135585130 135585263 -16951996 + ID_B1 SINE B4 82 210 -14 3 1619 288 0 0 0 chr5 135585267 135585299 -16951960 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 3 1619 484 176 27 27 chr5 135585590 135585701 -16951558 + PB1D10 SINE Alu 5 115 -2 3 1619 25 0 0 0 chr5 135585711 135585736 -16951523 + AT_rich Low_complexity Low_complexity 1 25 0 3 1619 889 267 19 70 chr5 135585740 135586010 -16951249 + B4 SINE B4 15 270 -22 3 1619 347 0 23 0 chr5 135586696 135586739 -16950520 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 1619 265 203 110 55 chr5 135586760 135586833 -16950426 - ID2 SINE ID -6 77 1 3 1619 707 187 59 7 chr5 135587198 135587333 -16949926 + B1_Mur4 SINE Alu 1 142 -8 3 1619 1138 151 85 10 chr5 135587431 135587632 -16949627 + B3 SINE B2 1 216 0 3 1619 520 62 12 12 chr5 135587649 135587730 -16949529 + B1_Mur4 SINE Alu 69 149 -1 3 1619 494 214 24 58 chr5 135587747 135587901 -16949358 + ID_B1 SINE B4 80 232 -60 3 1619 1131 129 32 21 chr5 135587910 135588100 -16949159 + B2_Mm2 SINE B2 2 193 -2 3 1619 807 130 8 0 chr5 135588395 135588518 -16948741 - B1_Mur4 SINE Alu -23 127 4 3 1619 689 218 43 37 chr5 135588555 135588717 -16948542 - RSINE1 SINE B4 0 165 3 3 1619 518 213 95 30 chr5 135588961 135589144 -16948115 + B3 SINE B2 2 192 -3 3 1619 360 0 0 0 chr5 135589158 135589198 -16948061 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1619 438 271 165 15 chr5 135589942 135590128 -16947131 + ZP3AR Satellite Satellite 1 213 0 3 1619 559 142 107 8 chr5 135590245 135590366 -16946893 - B1_Mur4 SINE Alu -16 134 2 3 1619 270 221 0 112 chr5 135590282 135590389 -16946870 - MT2B LTR ERVL -361 240 146 3 1619 386 333 78 6 chr5 135590436 135590602 -16946657 + MIRb SINE MIR 22 199 -69 3 1619 388 77 0 0 chr5 135590610 135590662 -16946597 - ORR1A4 LTR MaLR 0 329 278 3 1619 1690 27 0 0 chr5 135590664 135590852 -16946407 - B2_Mm1t SINE B2 -4 189 2 3 1619 611 220 22 4 chr5 135590857 135591022 -16946237 - B3 SINE B2 0 198 26 3 1619 676 143 0 0 chr5 135591019 135591124 -16946135 - ORR1B1 LTR MaLR -41 353 249 3 1619 777 116 0 30 chr5 135591124 135591257 -16946002 - ORR1B1 LTR MaLR -265 129 1 3 1619 480 174 0 42 chr5 135591551 135591647 -16945612 + B1_Mur2 SINE Alu 43 134 -15 3 1619 244 269 105 21 chr5 135591714 135591809 -16945450 + ID_B1 SINE B4 117 219 -5 3 1619 328 122 314 16 chr5 135592077 135592201 -16945058 - B2_Mm2 SINE B2 -6 189 29 3 1619 1362 85 11 0 chr5 135592211 135592387 -16944872 - B2_Mm1t SINE B2 -14 179 2 3 1619 1891 135 23 20 chr5 135592388 135592736 -16944523 - RLTR11A LTR ERVK -7 521 173 3 1619 226 320 67 0 chr5 135592731 135592806 -16944453 - B4 SINE B4 -206 86 7 3 1619 439 243 90 0 chr5 135592815 135592926 -16944333 - ID_B1 SINE B4 0 224 104 3 1619 294 307 150 0 chr5 135592926 135592942 -16944317 - B1F SINE Alu 0 149 4 3 1619 939 167 0 0 chr5 135592977 135593121 -16944138 - B1_Mur2 SINE Alu -5 144 1 3 1619 306 0 0 0 chr5 135593132 135593166 -16944093 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 3 1619 251 317 109 0 chr5 135593295 135593396 -16943863 + PB1D10 SINE Alu 1 112 -5 3 1619 338 250 0 24 chr5 135593410 135593492 -16943767 + ZP3AR Satellite Satellite 46 125 -87 3 1619 903 203 0 0 chr5 135593629 135593782 -16943477 + B3 SINE B2 1 153 -63 3 1619 300 27 0 0 chr5 135593782 135593819 -16943440 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1619 630 251 31 72 chr5 135593819 135593858 -16943401 + B2_Mm2 SINE B2 148 185 -10 3 1619 776 196 0 0 chr5 135593890 135594023 -16943236 + B1_Mus1 SINE Alu 3 135 -13 3 1619 230 0 33 0 chr5 135594026 135594056 -16943203 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1619 324 0 0 0 chr5 135594138 135594174 -16943085 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1619 539 277 35 14 chr5 135594175 135594318 -16942941 + RSINE1 SINE B4 4 149 -16 3 1619 276 312 202 0 chr5 135595130 135595239 -16942020 - ID_B1 SINE B4 -2 222 92 3 1619 234 324 14 0 chr5 135595262 135595336 -16941923 + CT-rich Low_complexity Low_complexity 1 75 0 3 1619 366 253 0 24 chr5 135595336 135595421 -16941838 - ID4_ SINE ID 0 83 1 3 1619 1006 77 0 19 chr5 135595421 135595580 -16941679 - ZP3AR Satellite Satellite -11 201 46 3 1619 350 198 65 65 chr5 135595712 135595820 -16941439 + PB1D10 SINE Alu 9 116 -1 3 1619 763 134 39 8 chr5 135596473 135596601 -16940658 + B2_Mm2 SINE B2 10 141 -54 3 1619 243 0 0 0 chr5 135596606 135596633 -16940626 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 3 1619 285 327 80 93 chr5 135596633 135596648 -16940611 + ID_B1 SINE B4 144 223 -1 3 1619 315 188 14 14 chr5 135596648 135596718 -16940541 + B1F SINE Alu 79 148 -1 3 1619 765 161 83 36 chr5 135596726 135596894 -16940365 + B2_Mm2 SINE B2 1 176 -19 3 1619 274 311 85 0 chr5 135596909 135597015 -16940244 + ZP3AR Satellite Satellite 45 159 -53 3 1619 336 94 0 0 chr5 135597015 135597068 -16940191 + (GA)n Simple_repeat Simple_repeat 2 54 0 3 1619 373 270 223 0 chr5 135597116 135597264 -16939995 + ID_B1 SINE B4 8 188 -36 3 1619 406 204 54 0 chr5 135598156 135598249 -16939010 + B1F SINE Alu 47 144 -5 3 1619 455 258 70 8 chr5 135598444 135598573 -16938686 + ID_B1 SINE B4 87 223 -1 3 1619 867 99 10 8 chr5 135598614 135598757 -16938502 - B1_Mus2 SINE Alu -8 142 5 3 1619 576 224 21 63 chr5 135598782 135598925 -16938334 + B1_Mur1 SINE Alu 13 149 0 3 1619 1198 74 0 13 chr5 135598971 135599121 -16938138 + B1_Mus1 SINE Alu 1 148 0 3 1619 247 61 20 39 chr5 135599122 135599173 -16938086 + (CAAAAA)n Simple_repeat Simple_repeat 3 52 0 3 1619 572 158 0 9 chr5 135599166 135599281 -16937978 + GA-rich Low_complexity Low_complexity 2 115 0 3 1619 310 229 0 0 chr5 135600037 135600098 -16937161 - ID2 SINE ID -22 61 1 3 1619 1540 52 0 0 chr5 135600058 135600343 -16936916 - ZP3AR Satellite Satellite -24 285 1 3 1619 864 204 0 0 chr5 135600450 135600592 -16936667 - B1_Mur2 SINE Alu -7 142 1 3 1619 180 0 0 0 chr5 135600611 135600631 -16936628 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 1619 444 177 163 0 chr5 135600784 135600895 -16936364 - MTD LTR MaLR -14 405 244 3 1619 1549 162 192 25 chr5 135600912 135601266 -16935993 - MTC LTR MaLR -8 413 1 3 1619 250 382 7 22 chr5 135601274 135601413 -16935846 - MTD LTR MaLR -278 141 5 3 1619 240 238 90 54 chr5 135601418 135601431 -16935828 - MT2B2 LTR ERVL -301 283 170 3 1619 305 194 196 41 chr5 135601431 135601528 -16935731 - B1F2 SINE Alu -32 117 6 3 1619 224 216 0 19 chr5 135601577 135601629 -16935630 + CT-rich Low_complexity Low_complexity 1 51 0 3 1619 540 186 21 0 chr5 135601656 135601753 -16935506 - PB1D10 SINE Alu -6 111 13 3 1619 180 0 0 0 chr5 135601815 135601835 -16935424 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 1619 29 0 0 0 chr5 135601835 135601864 -16935395 + AT_rich Low_complexity Low_complexity 1 29 0 3 1619 368 190 96 39 chr5 135601888 135601992 -16935267 - PB1D9 SINE Alu -2 118 9 3 1619 199 255 12 31 chr5 135603075 135603237 -16934022 + (CA)n Simple_repeat Simple_repeat 2 160 0 3 1619 249 221 0 63 chr5 135603290 135603401 -16933858 + (CATATA)n Simple_repeat Simple_repeat 5 108 0 3 1619 440 233 68 0 chr5 135604813 135604916 -16932343 - PB1D9 SINE Alu 0 120 11 3 1619 252 274 19 120 chr5 135604820 135604928 -16932331 - MT2B LTR ERVL -343 258 162 3 1619 1152 224 32 100 chr5 135605110 135605537 -16931722 - MTE2a LTR MaLR -14 405 1 3 1619 196 312 74 82 chr5 135605592 135605714 -16931545 + L2c LINE L2 3267 3387 0 3 1619 244 278 22 11 chr5 135605969 135606060 -16931199 + (TGGA)n Simple_repeat Simple_repeat 4 95 0 3 1619 499 245 158 0 chr5 135606310 135606494 -16930765 - MTEa LTR MaLR -2 377 165 3 1619 414 0 0 0 chr5 135606546 135606592 -16930667 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1619 685 234 20 52 chr5 135606611 135606764 -16930495 - RSINE1 SINE B4 -16 149 2 4 1619 649 237 32 13 chr5 135606791 135606945 -16930314 - RSINE1 SINE B4 -6 159 3 4 1619 572 258 11 63 chr5 135606953 135607127 -16930132 - MTEa LTR MaLR -214 165 1 3 1619 651 184 0 0 chr5 135607292 135607428 -16929831 + (TGGA)n Simple_repeat Simple_repeat 4 139 0 4 1619 1062 181 3 3 chr5 135607470 135607784 -16929475 + (TGGA)n Simple_repeat Simple_repeat 1 314 0 4 1619 260 287 35 0 chr5 135607796 135607883 -16929376 + (TGGA)n Simple_repeat Simple_repeat 3 92 0 4 1619 219 271 0 0 chr5 135608013 135608061 -16929198 + (TATG)n Simple_repeat Simple_repeat 2 49 0 4 1619 685 255 11 11 chr5 135610000 135610190 -16927069 + ZP3AR Satellite Satellite 12 201 -11 4 1619 243 300 25 0 chr5 135610190 135610270 -16926989 + ID4 SINE ID 1 82 -1 4 1619 237 290 188 15 chr5 135610818 135610839 -16926420 - B4A SINE B4 -46 246 91 4 1619 514 243 0 9 chr5 135610839 135610951 -16926308 - PB1D10 SINE Alu -1 116 6 4 1619 643 107 8 51 chr5 135611390 135611508 -16925751 + ZP3AR Satellite Satellite 13 125 -87 4 1619 244 256 37 37 chr5 135611479 135611560 -16925699 + B2_Mm2 SINE B2 1 81 -114 4 1619 334 333 95 18 chr5 135611790 135611958 -16925301 - RMER17B LTR ERVK -91 867 687 4 1619 3318 176 65 78 chr5 135611950 135612744 -16924515 - RMER17B LTR ERVK -174 784 1 4 1619 2148 80 97 0 chr5 135612789 135613089 -16924170 - ORR1A4 LTR MaLR 0 329 1 4 1619 949 157 14 7 chr5 135613929 135614077 -16923182 - B1_Mur4 SINE Alu 0 150 2 4 1619 755 186 39 0 chr5 135614210 135614339 -16922920 + B1_Mur1 SINE Alu 1 134 -15 4 1619 465 213 64 0 chr5 135614385 135614479 -16922780 - B1F2 SINE Alu -7 142 43 4 1619 615 302 6 19 chr5 135614504 135614666 -16922593 - RSINE1 SINE B4 -4 161 2 4 1619 525 292 8 0 chr5 135614666 135614786 -16922473 - B4A SINE B4 -62 230 110 4 1619 432 37 0 0 chr5 135614855 135614909 -16922350 + (TATG)n Simple_repeat Simple_repeat 2 55 0 4 1619 593 170 78 35 chr5 135614917 135615033 -16922226 - B1_Mur4 SINE Alu -10 140 20 4 1619 873 224 38 5 chr5 135615493 135615677 -16921582 + ORR1D2 LTR MaLR 169 358 -12 4 1619 683 242 0 15 chr5 135615743 135615877 -16921382 - B1_Mur3 SINE Alu -17 132 1 4 1619 375 222 93 0 chr5 135615937 135616045 -16921214 + B1F1 SINE Alu 2 119 -30 4 1619 368 130 0 0 chr5 135616069 135616123 -16921136 + B3A SINE B2 5 58 -140 4 1619 372 74 10 87 chr5 135616187 135616291 -16920968 + (TAA)n Simple_repeat Simple_repeat 1 96 0 4 1619 879 106 0 0 chr5 135616295 135616418 -16920841 + B1_Mur4 SINE Alu 7 129 -21 4 1619 870 284 14 0 chr5 135616458 135616676 -16920583 + ID_B1 SINE B4 2 222 -2 4 1619 1118 67 134 41 chr5 135616702 135616874 -16920385 + B2_Mm2 SINE B2 4 191 -4 4 1619 539 252 9 0 chr5 135616874 135616989 -16920270 + B3A SINE B2 14 129 -69 4 1619 279 0 0 0 chr5 135617024 135617055 -16920204 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1619 288 218 9 47 chr5 135617124 135617230 -16920029 + CT-rich Low_complexity Low_complexity 3 104 0 4 1619 270 275 138 24 chr5 135617949 135618072 -16919187 + MER5B DNA MER1_type 22 158 -20 4 1619 644 231 23 0 chr5 135618157 135618287 -16918972 + ZP3AR Satellite Satellite 43 175 -37 4 1619 200 280 0 0 chr5 135618366 135618416 -16918843 - MER5A DNA MER1_type -9 180 131 4 1619 477 278 79 0 chr5 135618424 135618550 -16918709 + B1F2 SINE Alu 13 148 -1 4 1619 1150 106 35 12 chr5 135618554 135618726 -16918533 + B2_Mm2 SINE B2 2 177 -18 4 1619 234 178 44 0 chr5 135618726 135618771 -16918488 + B3A SINE B2 61 107 -91 4 1619 1570 185 97 29 chr5 135618853 135619203 -16918056 + ORR1D1 LTR MaLR 1 374 0 4 1619 446 352 88 21 chr5 135619493 135619731 -16917528 - ORR1E LTR MaLR -17 342 89 4 1619 495 286 8 8 chr5 135619803 135619923 -16917336 + RSINE1 SINE B4 8 127 -38 4 1619 627 275 138 0 chr5 135620419 135620586 -16916673 - B4A SINE B4 -63 229 40 4 1619 227 139 0 0 chr5 135620775 135620811 -16916448 - B4 SINE B4 -256 36 1 4 1619 509 211 117 7 chr5 135620840 135620974 -16916285 + B1F SINE Alu 3 149 -1 4 1619 1191 263 77 65 chr5 135620984 135621073 -16916186 - MTD LTR MaLR 0 419 322 4 1619 1204 43 0 0 chr5 135621073 135621212 -16916047 + B1_Mus2 SINE Alu 2 140 -7 4 1619 1191 263 77 65 chr5 135621212 135621524 -16915735 - MTD LTR MaLR -98 321 13 4 1619 1279 66 12 0 chr5 135621951 135622117 -16915142 - B2_Mm2 SINE B2 -26 169 2 4 1619 1165 110 0 147 chr5 135622283 135622370 -16914889 - B2_Mm2 SINE B2 -4 191 124 4 1619 1183 82 0 0 chr5 135622370 135622517 -16914742 + B1_Mus1 SINE Alu 2 148 0 4 1619 1165 110 0 147 chr5 135622517 135622653 -16914606 - B2_Mm2 SINE B2 -72 123 1 4 1619 28 29 0 0 chr5 135622664 135622699 -16914560 + AT_rich Low_complexity Low_complexity 1 35 0 4 1619 478 289 45 32 chr5 135622728 135622882 -16914377 - RSINE1 SINE B4 -9 156 1 4 1619 353 169 0 0 chr5 135622882 135622930 -16914329 - PB1D10 SINE Alu -49 68 21 4 1619 558 236 73 0 chr5 135622972 135623095 -16914164 + B1F1 SINE Alu 7 138 -11 4 1619 212 148 49 0 chr5 135623109 135623147 -16914112 + A-rich Low_complexity Low_complexity 2 42 0 4 1619 1284 41 0 0 chr5 135623147 135623294 -16913965 + B1_Mus2 SINE Alu 1 147 0 4 1619 212 148 49 0 chr5 135623294 135623316 -16913943 + A-rich Low_complexity Low_complexity 43 64 0 4 1619 446 273 0 29 chr5 135623320 135623422 -16913837 + PB1D7 SINE Alu 22 120 0 4 1619 343 330 0 56 chr5 135623559 135623684 -16913575 + B4A SINE B4 159 276 -16 4 1619 204 350 0 12 chr5 135623704 135623785 -16913474 + (CA)n Simple_repeat Simple_repeat 1 80 0 4 1619 586 237 37 22 chr5 135623787 135623921 -16913338 - B1_Mur1 SINE Alu -5 144 9 4 1619 219 329 25 25 chr5 135623959 135624040 -16913219 + ID4 SINE ID 1 81 -2 4 1619 839 251 36 0 chr5 135624162 135624357 -16912902 - ID_B1 SINE B4 -20 204 3 4 1619 377 312 0 52 chr5 135626365 135626480 -16910779 - PB1D10 SINE Alu -7 110 2 4 1619 220 97 0 88 chr5 135626653 135626721 -16910538 + T-rich Low_complexity Low_complexity 5 66 0 4 1619 1253 48 0 0 chr5 135626721 135626868 -16910391 - B1_Mus1 SINE Alu 0 148 2 4 1619 331 297 0 32 chr5 135626928 135627022 -16910237 + ZP3AR Satellite Satellite 43 133 -79 4 1619 238 338 12 0 chr5 135626984 135627064 -16910195 + ID4 SINE ID 1 81 -2 4 1619 445 194 164 10 chr5 135627228 135627332 -16909927 - PB1D9 SINE Alu 0 120 1 4 1619 1402 80 32 0 chr5 135627332 135627518 -16909741 - B2_Mm2 SINE B2 -2 193 1 4 1619 443 254 0 130 chr5 135627563 135627694 -16909565 - ID_B1 SINE B4 -32 192 79 4 1619 182 289 22 0 chr5 135627703 135627748 -16909511 - MIRm SINE MIR -138 138 93 4 1619 211 316 79 0 chr5 135627905 135627981 -16909278 + ID SINE ID 2 83 -141 4 1619 597 289 78 6 chr5 135628055 135628247 -16909012 - B3A SINE B2 -12 204 2 4 1619 442 229 0 35 chr5 135628256 135628342 -16908917 - ID4_ SINE ID 0 83 1 4 1619 492 311 46 35 chr5 135628386 135628559 -16908700 - B4 SINE B4 -13 279 105 4 1619 229 222 22 0 chr5 135628592 135628637 -16908622 - B4 SINE B4 -240 52 7 4 1619 1944 182 167 9 chr5 135629135 135629590 -16907669 + RLTR11A2 LTR ERVK 1 527 0 4 1619 1477 62 5 30 chr5 135629592 135629790 -16907469 - B2_Mm1a SINE B2 0 193 1 4 1619 257 318 11 11 chr5 135629809 135629898 -16907361 - ZP3AR Satellite Satellite -80 132 44 4 1619 434 232 70 31 chr5 135629918 135630047 -16907212 - B1F SINE Alu -3 146 13 4 1619 1297 34 0 0 chr5 135630631 135630778 -16906481 - B1_Mus1 SINE Alu 0 148 2 4 1619 349 225 107 9 chr5 135630921 135631033 -16906226 - B1F1 SINE Alu 0 149 27 4 1619 505 329 61 19 chr5 135631043 135631257 -16906002 - RMER15 LTR ERVL -2 573 351 4 1619 393 39 0 0 chr5 135631509 135631560 -16905699 + (TG)n Simple_repeat Simple_repeat 1 51 0 4 1619 341 211 107 71 chr5 135631560 135631665 -16905594 - RSINE1 SINE B4 -44 121 12 4 1619 882 271 10 10 chr5 135631678 135631883 -16905376 + B3 SINE B2 1 205 -11 4 1619 1226 122 11 0 chr5 135631920 135632080 -16905179 + B2_Mm2 SINE B2 1 162 -33 4 1619 225 0 0 0 chr5 135632080 135632105 -16905154 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 4 1619 1226 122 11 0 chr5 135632105 135632125 -16905134 + B2_Mm2 SINE B2 163 182 -13 4 1619 1214 198 14 5 chr5 135632473 135632686 -16904573 - B3 SINE B2 0 216 2 4 1619 255 250 0 0 chr5 135632753 135632805 -16904454 - RSINE1 SINE B4 -108 57 6 4 1619 225 91 73 0 chr5 135632830 135632885 -16904374 - B2_Mm2 SINE B2 0 195 137 4 1619 313 134 0 91 chr5 135632874 135632944 -16904315 - B2_Mm2 SINE B2 -107 109 48 4 1619 1098 77 128 0 chr5 135633011 135633167 -16904092 - B2_Mm1t SINE B2 -16 177 2 4 1619 1671 26 5 0 chr5 135633682 135633873 -16903386 - B2_Mm1t SINE B2 0 193 2 4 1619 263 280 11 83 chr5 135633875 135633983 -16903276 - ID4 SINE ID -51 101 2 4 1619 339 272 38 75 chr5 135633976 135633994 -16903265 - MT2B LTR ERVL -286 315 166 4 1619 734 217 7 0 chr5 135633994 135634132 -16903127 - B1_Mur1 SINE Alu -9 140 2 4 1619 673 236 20 34 chr5 135634142 135634291 -16902968 - B1_Mur3 SINE Alu 0 149 3 4 1619 780 78 0 0 chr5 135634281 135634384 -16902875 + B1_Mus2 SINE Alu 3 105 -42 4 1619 419 174 43 11 chr5 135634341 135634434 -16902825 - B1_Mm SINE Alu -51 96 1 4 1619 543 205 8 43 chr5 135634797 135634914 -16902345 - PB1D7 SINE Alu -7 113 1 4 1619 452 303 0 0 chr5 135636022 135636131 -16901128 + ID_B1 SINE B4 91 199 -25 4 1619 461 255 25 68 chr5 135636033 135636151 -16901108 + B1F SINE Alu 21 133 -16 4 1619 283 256 11 95 chr5 135636164 135636259 -16901000 + MIRc SINE MIR 114 203 -65 5 1619 206 332 195 47 chr5 135636899 135637243 -16900016 + L2 LINE L2 2545 2939 -480 5 1619 378 245 53 11 chr5 135637861 135637956 -16899303 - ZP3AR Satellite Satellite -78 134 36 5 1619 224 337 105 35 chr5 135638375 135638547 -16898712 + MIRc SINE MIR 3 186 -82 5 1619 566 252 0 0 chr5 135638624 135638739 -16898520 - PB1D9 SINE Alu -3 117 3 5 1619 303 353 0 10 chr5 135638658 135638761 -16898498 - B4 SINE B4 -124 168 67 5 1619 956 135 0 45 chr5 135639109 135639264 -16897995 - B1_Mur4 SINE Alu 0 150 3 5 1619 234 372 28 23 chr5 135639637 135639813 -16897446 + RLTR1 LTR ERV1 440 616 -8 5 1619 284 247 68 0 chr5 135639806 135639879 -16897380 + PB1D10 SINE Alu 35 112 -5 5 1619 349 210 37 12 chr5 135639888 135639970 -16897289 + RSINE1 SINE B4 12 95 -70 5 1619 479 141 150 10 chr5 135640033 135640133 -16897126 + B3 SINE B2 1 114 -102 5 1619 228 286 0 0 chr5 135640125 135640174 -16897085 + B4 SINE B4 162 210 -82 5 1619 1283 57 0 0 chr5 135640180 135640337 -16896922 + B2_Mm2 SINE B2 5 161 -34 5 1619 432 0 0 0 chr5 135640337 135640385 -16896874 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 5 1619 828 198 103 41 chr5 135640385 135640422 -16896837 + B3 SINE B2 180 211 -5 5 1619 591 177 129 0 chr5 135640579 135640703 -16896556 + B1_Mus2 SINE Alu 6 145 -2 5 1619 219 186 0 0 chr5 135640716 135640759 -16896500 + (TATG)n Simple_repeat Simple_repeat 2 44 0 5 1619 979 121 7 0 chr5 135640789 135640929 -16896330 + B1_Mus1 SINE Alu 2 142 -6 5 1619 348 280 84 0 chr5 135640933 135641040 -16896219 + PB1 SINE Alu 1 116 -11 5 1619 866 176 229 0 chr5 135641371 135641541 -16895718 - B3 SINE B2 -6 210 2 5 1619 216 0 0 0 chr5 135641983 135642007 -16895252 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 5 1619 518 272 7 68 chr5 135642008 135642020 -16895239 - ID_B1 SINE B4 -2 222 212 5 1619 1294 14 7 0 chr5 135642020 135642165 -16895094 - B1_Mus2 SINE Alu 0 147 2 5 1619 518 289 11 73 chr5 135642165 135642336 -16894923 - ID_B1 SINE B4 -78 214 53 5 1619 24 32 0 0 chr5 135642378 135642409 -16894850 + AT_rich Low_complexity Low_complexity 1 31 0 5 1619 411 244 23 11 chr5 135642901 135642988 -16894271 - ID_B1 SINE B4 -4 220 133 5 1619 724 135 9 0 chr5 135643146 135643257 -16894002 - B1_Mus2 SINE Alu -24 123 12 5 1619 356 225 8 112 chr5 135643157 135643282 -16893977 - MT2B LTR ERVL -337 264 153 5 1619 199 298 78 57 chr5 135643387 135643579 -16893680 - L2 LINE L2 -2672 747 552 5 1619 318 148 0 0 chr5 135643708 135643762 -16893497 + (A)n Simple_repeat Simple_repeat 1 54 0 5 1619 909 93 0 30 chr5 135643767 135643900 -16893359 + B1_Mus1 SINE Alu 20 148 0 5 1619 308 208 27 40 chr5 135643936 135644011 -16893248 + B1_Mus1 SINE Alu 34 107 -41 5 1619 272 302 35 11 chr5 135645116 135645203 -16892056 - PB1D7 SINE Alu -3 117 29 5 1619 538 207 34 17 chr5 135645217 135645335 -16891924 - B1_Mur2 SINE Alu -1 148 29 5 1619 628 204 215 6 chr5 135645425 135645602 -16891657 + B3 SINE B2 3 216 0 5 1619 227 315 75 11 chr5 135645952 135646045 -16891214 + PB1D9 SINE Alu 22 120 0 5 1619 342 226 0 0 chr5 135646071 135646133 -16891126 + ID4_ SINE ID 6 67 -16 5 1619 217 298 8 111 chr5 135646133 135646153 -16891106 + B4 SINE B4 6 77 -215 5 1619 255 31 0 0 chr5 135646153 135646185 -16891074 + (CA)n Simple_repeat Simple_repeat 1 32 0 5 1619 217 298 8 111 chr5 135646185 135646219 -16891040 + B4 SINE B4 78 109 -183 5 1619 227 279 59 0 chr5 135646618 135646686 -16890573 - ID4 SINE ID -11 72 1 5 1619 336 186 26 103 chr5 135646704 135646782 -16890477 - B1F SINE Alu -73 76 5 5 1619 1945 138 65 42 chr5 135647233 135647619 -16889640 - RMER10B LTR ERVL 0 398 4 5 1619 939 263 14 5 chr5 135647638 135647852 -16889407 - B3 SINE B2 0 216 1 5 1619 515 249 127 111 chr5 135647859 135648040 -16889219 - B3 SINE B2 -11 184 1 5 1619 440 245 0 29 chr5 135648154 135648259 -16889000 + B3A SINE B2 97 198 0 5 1619 771 192 191 6 chr5 135648437 135648610 -16888649 + B3 SINE B2 1 205 -11 5 1619 244 325 48 0 chr5 135648636 135648719 -16888540 + BC1_Mm scRNA scRNA 1 87 -65 5 1619 462 235 61 0 chr5 135648808 135648906 -16888353 + PB1D10 SINE Alu 1 104 -13 5 1619 1167 179 5 5 chr5 135649097 135649299 -16887960 + B3 SINE B2 12 213 -3 5 1619 207 163 20 20 chr5 135649332 135649382 -16887877 + T-rich Low_complexity Low_complexity 4 53 0 5 1619 417 274 0 40 chr5 135649507 135649606 -16887653 - B1_Mur3 SINE Alu -8 141 47 5 1619 528 250 17 8 chr5 135649597 135649714 -16887545 - ID_B1 SINE B4 -1 223 106 5 1619 344 290 37 18 chr5 135649884 135649993 -16887266 - PB1D7 SINE Alu -7 113 3 5 1619 231 263 0 124 chr5 135650069 135650154 -16887105 + BC1_Mm scRNA scRNA 21 93 -59 5 1619 1285 20 7 0 chr5 135650154 135650300 -16886959 + B1_Mm SINE Alu 1 147 0 5 1619 231 263 0 124 chr5 135650300 135650327 -16886932 + BC1_Mm scRNA scRNA 94 119 -33 5 1619 284 320 31 47 chr5 135650329 135650457 -16886802 + B1F1 SINE Alu 1 126 -23 5 1619 832 175 174 34 chr5 135650967 135651203 -16886056 - ORR1D1 LTR MaLR 0 374 106 5 1619 764 204 236 29 chr5 135651209 135651547 -16885712 - MTD LTR MaLR -10 409 2 5 1619 587 188 16 82 chr5 135651547 135651626 -16885633 - ORR1D1 LTR MaLR -263 111 40 5 1619 1039 66 43 7 chr5 135651626 135651756 -16885503 + B1_Mus1 SINE Alu 3 138 -10 5 1619 315 0 0 0 chr5 135651756 135651791 -16885468 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5 1619 587 188 16 82 chr5 135651798 135651837 -16885422 - ORR1D1 LTR MaLR -335 39 1 5 1619 257 138 29 0 chr5 135651837 135651884 -16885375 + PB1D9 SINE Alu 78 142 -7 5 1619 1054 188 43 29 chr5 135652119 135652327 -16884932 - B3 SINE B2 -5 211 1 5 1619 300 70 0 0 chr5 135652335 135652378 -16884881 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 5 1619 906 206 42 126 chr5 135652401 135652640 -16884619 - ID_B1 SINE B4 -2 222 4 5 1619 216 0 0 0 chr5 135652642 135652666 -16884593 + (TG)n Simple_repeat Simple_repeat 1 24 0 5 1619 778 205 137 0 chr5 135653140 135653330 -16883929 + B3 SINE B2 1 216 0 5 1619 720 138 34 8 chr5 135653376 135653493 -16883766 + PB1D9 SINE Alu 1 120 0 5 1619 317 196 80 80 chr5 135653815 135653915 -16883344 - PB1D10 SINE Alu -4 113 14 5 1619 506 81 0 33 chr5 135653940 135654030 -16883229 + (TC)n Simple_repeat Simple_repeat 2 88 0 5 1619 270 0 0 0 chr5 135654030 135654060 -16883199 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1619 569 307 11 38 chr5 135655214 135655397 -16881862 + ID_B1 SINE B4 2 179 -45 5 1619 1289 41 0 0 chr5 135655414 135655561 -16881698 - B1_Mm SINE Alu 0 147 1 5 1619 432 252 28 0 chr5 135655575 135655682 -16881577 + PB1D7 SINE Alu 2 111 -9 5 1619 291 308 55 0 chr5 135657839 135657930 -16879329 + PB1D10 SINE Alu 21 116 -1 5 1619 346 304 62 67 chr5 135657941 135658147 -16879112 + B4 SINE B4 2 207 -85 5 1619 279 0 0 0 chr5 135658241 135658272 -16878987 + (TATG)n Simple_repeat Simple_repeat 4 34 0 5 1619 412 218 22 33 chr5 135658311 135658401 -16878858 + B3A SINE B2 8 96 -102 5 1619 290 277 122 102 chr5 135658402 135658492 -16878767 + MT2B2 LTR ERVL 62 155 -429 5 1619 705 177 131 0 chr5 135658492 135658622 -16878637 + B1_Mur1 SINE Alu 3 149 0 5 1619 672 277 44 10 chr5 135658698 135658902 -16878357 + B3 SINE B2 1 211 -5 5 1619 654 185 94 22 chr5 135658906 135659044 -16878215 + B1_Mur2 SINE Alu 2 149 0 5 1619 555 261 46 50 chr5 135659281 135659499 -16877760 + ID_B1 SINE B4 5 221 -3 5 202 237 294 78 0 chr5 135659519 135659621 -16877638 + Lx8 LINE L1 7139 7248 -225 5 1620 201 74 0 0 chr5 135659699 135659726 -16877533 + (C)n Simple_repeat Simple_repeat 1 27 0 5 1620 583 88 17 0 chr5 135659746 135659840 -16877419 + B2_Mm2 SINE B2 23 120 -96 5 1620 276 137 0 0 chr5 135659851 135659902 -16877357 + (A)n Simple_repeat Simple_repeat 1 51 0 5 1620 248 230 0 13 chr5 135659918 135659993 -16877266 + A-rich Low_complexity Low_complexity 5 78 0 5 1620 344 181 209 45 chr5 135659996 135660106 -16877153 + MT2B LTR ERVL 152 279 -322 5 1620 797 104 5 0 chr5 135660009 135660132 -16877127 + B1_Mus1 SINE Alu 22 148 0 5 1620 894 93 0 0 chr5 135660187 135660305 -16876954 + B1_Mus1 SINE Alu 26 143 -5 5 1620 255 61 0 0 chr5 135660307 135660340 -16876919 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1620 418 111 0 0 chr5 135660415 135660478 -16876781 - B1_Mm SINE Alu 0 147 85 5 1620 790 195 37 30 chr5 135660480 135660644 -16876615 - RMER19B LTR ERVK -330 572 408 5 1620 1542 158 25 0 chr5 135660647 135660888 -16876371 - RMER19B LTR ERVK -655 247 1 5 1620 367 215 25 0 chr5 135660965 135661044 -16876215 + PB1D10 SINE Alu 34 114 -3 5 1620 212 301 14 14 chr5 135661087 135661161 -16876098 + CT-rich Low_complexity Low_complexity 5 78 0 5 1620 1045 209 36 0 chr5 135661292 135661488 -16875771 - B3 SINE B2 -13 203 1 5 1620 617 245 30 73 chr5 135661611 135661801 -16875458 - B3 SINE B2 -17 181 1 5 1620 22 0 0 0 chr5 135661818 135661840 -16875419 + AT_rich Low_complexity Low_complexity 1 22 0 5 1620 341 283 87 48 chr5 135661885 135661989 -16875270 - B3 SINE B2 -108 108 1 5 1620 198 209 0 0 chr5 135662137 135662180 -16875079 + (TA)n Simple_repeat Simple_repeat 2 44 0 5 1620 511 257 48 92 chr5 135662256 135662462 -16874797 - B3A SINE B2 0 198 2 5 1620 329 195 90 22 chr5 135664323 135664412 -16872847 - ID_B1 SINE B4 0 224 130 6 1620 450 49 0 0 chr5 135664421 135664482 -16872777 + (TC)n Simple_repeat Simple_repeat 2 62 0 6 1620 25 0 0 0 chr5 135664585 135664610 -16872649 + GC_rich Low_complexity Low_complexity 1 25 0 6 1620 516 233 25 16 chr5 135665034 135665156 -16872103 - B1F SINE Alu -1 148 26 6 1620 260 274 7 82 chr5 135665037 135665172 -16872087 + YREP_Mm Unknown Unknown 182 306 -1506 6 1620 372 229 265 8 chr5 135665244 135665376 -16871883 - B3 SINE B2 -4 212 47 6 1620 407 287 34 34 chr5 135665427 135665575 -16871684 - B1_Mur1 SINE Alu 0 149 2 6 1620 210 243 134 126 chr5 135665818 135665945 -16871314 - B1F1 SINE Alu -16 133 6 6 1620 337 255 171 6 chr5 135665979 135666137 -16871122 - B2_Mm2 SINE B2 -2 193 10 6 1620 239 200 246 0 chr5 135666348 135666413 -16870846 - B1F1 SINE Alu -2 147 67 6 1620 1366 85 16 0 chr5 135666500 135666689 -16870570 - B2_Mm1t SINE B2 -1 192 1 6 1620 1398 83 6 0 chr5 135667188 135667369 -16869890 - B2_Mm1a SINE B2 -10 183 2 6 1620 356 235 31 0 chr5 135667521 135667619 -16869640 + PB1D10 SINE Alu 10 110 -7 6 1620 435 176 191 35 chr5 135667624 135667765 -16869494 + B3 SINE B2 2 164 -52 6 1620 1343 71 16 32 chr5 135667799 135667989 -16869270 - B2_Mm2 SINE B2 -8 187 1 6 1620 1265 102 21 21 chr5 135667993 135668184 -16869075 - B2_Mm2 SINE B2 -4 191 1 6 1620 795 249 85 0 chr5 135668396 135668585 -16868674 - B3 SINE B2 -10 206 2 6 1620 412 124 300 11 chr5 135668585 135668675 -16868584 - PB1D9 SINE Alu -3 117 2 6 1620 180 0 0 0 chr5 135668688 135668708 -16868551 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6 1620 291 208 14 14 chr5 135668726 135668799 -16868460 - B1_Mur4 SINE Alu -77 73 1 6 1620 243 202 44 77 chr5 135668799 135668829 -16868430 - ID SINE ID -144 80 54 6 1620 543 203 125 0 chr5 135669201 135669329 -16867930 - B1_Mur3 SINE Alu -5 144 1 6 1620 1069 202 29 19 chr5 135669361 135669568 -16867691 - B3 SINE B2 -7 209 1 6 1620 389 331 15 15 chr5 135669571 135669703 -16867556 - B1F1 SINE Alu -2 147 16 6 1620 226 229 0 0 chr5 135669843 135669891 -16867368 - B1F1 SINE Alu -101 48 1 6 1620 501 282 98 49 chr5 135669903 135669951 -16867308 - B3 SINE B2 0 216 179 6 1620 207 0 0 0 chr5 135669951 135669974 -16867285 + (TATG)n Simple_repeat Simple_repeat 4 26 0 6 1620 501 282 98 49 chr5 135669974 135670130 -16867129 - B3 SINE B2 -38 178 3 6 1620 1359 193 89 50 chr5 135670200 135670560 -16866699 - ORR1C1 LTR MaLR 0 378 5 6 1620 656 240 11 0 chr5 135670915 135671056 -16866203 - ID_B1 SINE B4 0 224 84 6 1620 836 119 0 0 chr5 135671600 135671726 -16865533 - B1_Mus1 SINE Alu -21 127 2 6 1620 554 247 90 55 chr5 135671789 135671990 -16865269 - B3 SINE B2 -8 208 1 6 1620 212 140 220 34 chr5 135672077 135672136 -16865123 + B1_Mm SINE Alu 76 145 -2 6 1620 272 169 195 0 chr5 135672883 135672960 -16864299 + B1_Mur2 SINE Alu 41 132 -17 6 1620 266 73 0 24 chr5 135673183 135673225 -16864034 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 6 1620 881 272 19 0 chr5 135673316 135673522 -16863737 - B3 SINE B2 -6 210 1 6 1620 1308 76 60 5 chr5 135673531 135673716 -16863543 - B2_Mm2 SINE B2 0 195 1 6 1620 828 0 0 0 chr5 135673882 135673974 -16863285 + (TTTC)n Simple_repeat Simple_repeat 1 92 0 6 1620 701 145 119 22 chr5 135674206 135674340 -16862919 - B1_Mus1 SINE Alu -1 147 1 6 1620 249 266 170 0 chr5 135674395 135674489 -16862770 - PB1D7 SINE Alu -10 110 1 6 1620 284 250 67 22 chr5 135674405 135674495 -16862764 - MT2B LTR ERVL -350 251 158 6 1620 207 0 0 0 chr5 135674500 135674523 -16862736 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6 1620 1219 28 0 0 chr5 135674526 135674667 -16862592 - B1_Mus1 SINE Alu -6 142 2 6 1620 903 82 30 0 chr5 135674896 135675031 -16862228 - B1_Mus2 SINE Alu 0 147 9 6 1620 230 0 33 0 chr5 135675109 135675139 -16862120 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 6 1620 257 235 71 36 chr5 135675146 135675230 -16862029 - PB1D7 SINE Alu 0 120 34 6 1620 394 271 32 24 chr5 135675425 135675550 -16861709 - B1F SINE Alu -1 148 23 6 1620 1119 88 0 7 chr5 135675583 135675732 -16861527 - B1_Mus1 SINE Alu 0 148 1 6 1620 521 285 45 38 chr5 135675809 135675966 -16861293 - RSINE1 SINE B4 -4 161 4 6 1620 228 246 9 29 chr5 135676388 135676456 -16860803 - B1_Mus2 SINE Alu -7 113 42 6 1620 432 239 0 152 chr5 135676457 135676595 -16860664 - B1_Mur4 SINE Alu 0 150 34 6 1620 1510 58 16 5 chr5 135677077 135677268 -16859991 + B2_Mm2 SINE B2 1 193 -2 6 1620 250 248 170 24 chr5 135677440 135677605 -16859654 + L1M5 LINE L1 5351 5539 -701 6 1620 311 0 0 83 chr5 135677854 135677874 -16859385 + (T)n Simple_repeat Simple_repeat 1 17 0 6 1620 1142 69 0 0 chr5 135677874 135678018 -16859241 - B1_Mus2 SINE Alu -3 144 1 6 1620 311 0 0 83 chr5 135678018 135678045 -16859214 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1620 225 200 36 18 chr5 135678083 135678139 -16859120 + L1M5 LINE L1 5716 5772 -401 6 1620 537 272 16 0 chr5 135678354 135678479 -16858780 - ID_B1 SINE B4 -2 222 96 6 1620 300 318 38 0 chr5 135678721 135678853 -16858406 - B1F SINE Alu -11 138 2 6 1620 284 246 147 23 chr5 135678872 135679001 -16858258 + L1MD LINE L1 4789 4933 -1213 6 1620 180 0 0 0 chr5 135679048 135679068 -16858191 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6 1620 1561 47 5 0 chr5 135679071 135679262 -16857997 - B2_Mm1a SINE B2 -1 192 1 6 1620 360 319 43 0 chr5 135679262 135679378 -16857881 + B1F2 SINE Alu 11 131 -18 6 1620 276 233 514 0 chr5 135679485 135679604 -16857655 - B3 SINE B2 -8 208 29 6 1620 441 218 48 56 chr5 135679641 135679767 -16857492 - ID_B1 SINE B4 -1 223 99 6 1620 837 138 28 0 chr5 135679835 135679980 -16857279 + URR1A DNA MER1_type 78 226 0 6 1620 344 280 49 43 chr5 135679980 135679999 -16857260 - CYRA11_Mm Unknown Y-chromosome -297 320 156 6 1620 277 355 25 0 chr5 135679991 135680112 -16857147 - ID_B1 SINE B4 -8 216 93 6 1620 243 0 0 0 chr5 135680112 135680139 -16857120 + (GCTG)n Simple_repeat Simple_repeat 2 28 0 6 1620 261 0 0 0 chr5 135680139 135680167 -16857092 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 6 1620 1030 79 29 0 chr5 135680167 135680307 -16856952 - B1_Mus1 SINE Alu -4 144 1 6 1620 1880 163 119 3 chr5 135680403 135680587 -16856672 - ORR1C2 LTR MaLR 0 384 192 6 1620 264 59 0 0 chr5 135680587 135680621 -16856638 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 6 1620 1880 163 119 3 chr5 135680621 135680780 -16856479 - ORR1C2 LTR MaLR -193 191 3 6 1620 433 274 0 0 chr5 135681321 135681427 -16855832 - PB1D7 SINE Alu -2 118 13 6 1620 250 265 0 56 chr5 135681375 135681447 -16855812 - B4A SINE B4 -143 149 82 6 1620 505 179 60 43 chr5 135681496 135681613 -16855646 - PB1D9 SINE Alu 0 120 2 6 1620 1913 148 137 22 chr5 135681910 135682275 -16854984 - MTB_Mm LTR MaLR 0 407 1 6 1620 686 264 47 16 chr5 135682647 135682839 -16854420 - B3A SINE B2 0 198 1 6 1620 245 306 0 31 chr5 135683295 135683359 -16853900 - ID_B1 SINE B4 -80 144 83 6 1620 373 280 59 29 chr5 135683473 135683609 -16853650 - ID_B1 SINE B4 -1 223 84 6 1620 471 185 0 0 chr5 135683870 135683962 -16853297 + (TA)n Simple_repeat Simple_repeat 2 93 0 6 1620 671 254 50 6 chr5 135683966 135684148 -16853111 - B3 SINE B2 0 216 27 6 1620 980 200 49 24 chr5 135684183 135684388 -16852871 - B3 SINE B2 -6 210 1 6 1620 631 250 45 0 chr5 135684457 135684613 -16852646 - B3 SINE B2 -2 214 52 6 1620 28 0 0 0 chr5 135684859 135684887 -16852372 + AT_rich Low_complexity Low_complexity 1 28 0 6 1620 338 180 33 0 chr5 135685260 135685321 -16851938 - ID4_ SINE ID -19 64 2 6 1620 398 250 56 0 chr5 135685485 135685593 -16851666 + ID_B1 SINE B4 110 223 -1 6 1620 510 246 41 48 chr5 135685827 135685972 -16851287 - B1_Mur1 SINE Alu -1 148 5 6 1620 514 243 0 26 chr5 135685983 135686097 -16851162 - PB1D10 SINE Alu -4 113 3 6 1620 1357 67 44 0 chr5 135686279 135686459 -16850800 + B2_Mm1t SINE B2 1 188 -5 6 1620 1185 250 11 22 chr5 135686935 135687205 -16850054 - MTD LTR MaLR -148 271 5 6 1620 443 222 162 0 chr5 135687218 135687335 -16849924 + B1_Mur2 SINE Alu 1 136 -13 6 1620 392 162 111 58 chr5 135687896 135688026 -16849233 + B1_Mur2 SINE Alu 16 149 0 6 1620 454 293 86 7 chr5 135688059 135688210 -16849049 + B3A SINE B2 1 163 -35 6 1620 237 250 0 0 chr5 135689536 135689592 -16847667 - PB1D9 SINE Alu -59 61 6 6 1620 332 273 54 9 chr5 135689748 135689859 -16847400 - PB1D10 SINE Alu -1 116 1 6 1620 293 284 0 0 chr5 135690056 135690130 -16847129 + B1_Mus2 SINE Alu 1 74 -73 6 1620 386 298 55 34 chr5 135690211 135690357 -16846902 - B1F SINE Alu 0 149 1 6 1620 380 230 0 0 chr5 135690818 135690892 -16846367 - B1_Mus2 SINE Alu -73 74 1 6 1620 1093 69 13 40 chr5 135690928 135691079 -16846180 + B1_Mus2 SINE Alu 1 147 0 6 1620 529 162 98 0 chr5 135691156 135691282 -16845977 + B1_Mur4 SINE Alu 5 150 0 6 1620 230 290 0 42 chr5 135692159 135692231 -16845028 - ID4 SINE ID -11 72 4 6 1620 301 220 242 78 chr5 135694272 135694400 -16842859 - B1F SINE Alu 0 149 1 7 1620 201 138 0 0 chr5 135694428 135694457 -16842802 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1620 380 216 102 0 chr5 135694494 135694582 -16842677 + B3 SINE B2 106 202 -14 7 1620 370 178 187 11 chr5 135694715 135694806 -16842453 - PB1D7 SINE Alu -1 119 13 7 1620 441 303 66 0 chr5 135695016 135695138 -16842121 + RSINE1 SINE B4 3 132 -33 7 1620 733 241 39 33 chr5 135695197 135695377 -16841882 + B3A SINE B2 2 182 -16 7 1620 546 262 150 24 chr5 135695458 135695704 -16841555 - L1M4 LINE L1 -398 5780 5504 7 1620 804 163 20 33 chr5 135695927 135696079 -16841180 - B1_Mur4 SINE Alu 0 150 1 7 1620 402 263 8 26 chr5 135696100 135696217 -16841042 - B1_Mus2 SINE Alu -31 116 2 7 1620 243 196 16 157 chr5 135696113 135696234 -16841025 - MT2B LTR ERVL -344 257 154 7 1620 536 134 10 0 chr5 135696236 135696333 -16840926 + (TC)n Simple_repeat Simple_repeat 1 98 0 7 1620 378 0 0 0 chr5 135696334 135696376 -16840883 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 7 1620 1088 90 7 0 chr5 135696522 135696666 -16840593 + B1_Mus2 SINE Alu 1 145 -2 7 1620 524 250 140 11 chr5 135696829 135697015 -16840244 - B3 SINE B2 0 216 7 7 1620 561 224 22 29 chr5 135697015 135697153 -16840106 + B1_Mur4 SINE Alu 1 137 -13 7 1620 491 200 50 0 chr5 135697292 135697392 -16839867 + PB1D9 SINE Alu 1 105 -15 7 1620 781 168 7 0 chr5 135697468 135697605 -16839654 - B1_Mur4 SINE Alu -1 149 12 7 1620 22 0 0 0 chr5 135697796 135697818 -16839441 + AT_rich Low_complexity Low_complexity 1 22 0 7 1620 1186 74 0 0 chr5 135698219 135698367 -16838892 + B1_Mus1 SINE Alu 1 148 0 7 1620 22 0 0 0 chr5 135698445 135698467 -16838792 + AT_rich Low_complexity Low_complexity 1 22 0 7 1620 477 236 137 27 chr5 135698481 135698664 -16838595 + B3 SINE B2 7 209 -7 7 1620 403 90 45 0 chr5 135699197 135699264 -16837995 + URR1B DNA MER1_type 156 225 0 7 1620 234 276 219 12 chr5 135699343 135699512 -16837747 - Tigger5 DNA MER2_type -2167 239 36 7 1620 443 263 26 0 chr5 135699512 135699626 -16837633 - PB1D10 SINE Alu 0 117 1 7 1620 274 208 26 53 chr5 135700100 135700176 -16837083 + PB1D10 SINE Alu 25 98 -19 7 1620 251 338 15 0 chr5 135700209 135700277 -16836982 + AluF_3 SINE Alu 141 209 -102 7 1620 243 0 0 0 chr5 135700376 135700403 -16836856 + (TG)n Simple_repeat Simple_repeat 2 28 0 7 1620 522 231 68 0 chr5 135700404 135700521 -16836738 - B3 SINE B2 -48 168 44 7 1620 735 161 15 6 chr5 135700946 135701093 -16836166 - B1_Mus2 SINE Alu 0 148 6 7 1620 608 261 59 0 chr5 135701126 135701279 -16835980 - RSINE1 SINE B4 -2 163 2 7 1620 462 230 8 50 chr5 135701313 135701432 -16835827 - PB1D9 SINE Alu -2 118 5 7 1620 320 282 23 53 chr5 135701492 135701623 -16835636 - Tigger5 DNA MER2_type -7 2399 2273 7 1620 492 48 0 0 chr5 135701813 135701876 -16835383 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 7 1620 1484 66 0 0 chr5 135701876 135702057 -16835202 - B2_Mm1a SINE B2 -12 181 1 7 1620 22 0 0 0 chr5 135702211 135702233 -16835026 + AT_rich Low_complexity Low_complexity 1 22 0 7 1620 693 246 168 0 chr5 135702591 135702782 -16834477 + ID_B1 SINE B4 2 224 0 7 1620 668 266 191 33 chr5 135702868 135703230 -16834029 - MTD LTR MaLR 0 419 1 7 1620 603 208 8 30 chr5 135703277 135703411 -16833848 - B1F SINE Alu -7 142 12 7 1620 22 70 0 0 chr5 135703514 135703557 -16833702 + AT_rich Low_complexity Low_complexity 1 43 0 7 1620 1440 94 5 0 chr5 135703618 135703809 -16833450 - B2_Mm1a SINE B2 0 193 2 7 1620 682 132 28 56 chr5 135703877 135704021 -16833238 + B1_Mur3 SINE Alu 9 148 -1 7 1620 1486 58 32 5 chr5 135704100 135704289 -16832970 + B2_Mm2 SINE B2 2 195 0 7 1620 426 262 0 19 chr5 135704557 135704662 -16832597 - B1_Mus2 SINE Alu -43 104 2 7 1620 285 29 0 0 chr5 135704706 135704740 -16832519 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1620 452 117 0 25 chr5 135704755 135704834 -16832425 - B3 SINE B2 -139 77 1 7 1620 324 224 184 0 chr5 135704845 135704943 -16832316 - ID_B1 SINE B4 -6 218 103 7 1620 304 281 44 0 chr5 135705213 135705327 -16831932 + L1MB7 LINE L1 5708 5826 -352 7 1620 1677 36 0 0 chr5 135705366 135705559 -16831700 - B2_Mm1a SINE B2 0 193 1 7 1620 575 244 47 23 chr5 135705593 135705765 -16831494 + L1MB7 LINE L1 5813 5988 -196 7 1620 1300 105 10 21 chr5 135705792 135705986 -16831273 + B2_Mm2 SINE B2 1 192 -3 7 1620 33 25 0 0 chr5 135706782 135706822 -16830437 + AT_rich Low_complexity Low_complexity 1 40 0 7 1620 1152 30 0 0 chr5 135706827 135706960 -16830299 + B1_Mus1 SINE Alu 1 133 -15 7 1620 222 37 0 0 chr5 135706973 135707000 -16830259 + (TA)n Simple_repeat Simple_repeat 1 27 0 7 1620 219 200 0 0 chr5 135707159 135707204 -16830055 - ID4_ SINE ID 0 83 39 7 1620 272 187 219 52 chr5 135708038 135708134 -16829125 + PB1D9 SINE Alu 9 120 0 7 1620 334 165 277 34 chr5 135708312 135708431 -16828828 - B1_Mur1 SINE Alu 0 149 2 7 1620 298 42 42 0 chr5 135708432 135708480 -16828779 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 7 1620 1226 54 0 0 chr5 135708481 135708628 -16828631 - B1_Mm SINE Alu 0 147 1 7 1620 323 232 88 29 chr5 135708631 135708733 -16828526 - PB1D10 SINE Alu 0 117 10 7 1620 657 189 0 29 chr5 135708765 135708901 -16828358 + B3 SINE B2 1 132 -84 7 1620 265 261 206 44 chr5 135709134 135709270 -16827989 - RSINE1 SINE B4 0 165 8 7 1620 758 261 20 13 chr5 135709737 135709949 -16827310 - B3A SINE B2 0 216 2 7 1620 1029 141 48 5 chr5 135710068 135710254 -16827005 - B2_Mm2 SINE B2 0 195 2 7 1620 410 298 29 9 chr5 135710254 135710359 -16826900 - PB1D10 SINE Alu -10 107 1 7 1620 631 211 0 0 chr5 135710423 135710532 -16826727 - PB1D7 SINE Alu 0 120 12 7 1620 1571 191 66 154 chr5 135710532 135710679 -16826580 - RLTR18B LTR ERVK 0 512 371 7 1620 207 0 0 0 chr5 135710679 135710702 -16826557 + (CCCCCA)n Simple_repeat Simple_repeat 3 25 0 7 1620 452 155 0 0 chr5 135710708 135710779 -16826480 - ID2 SINE ID -12 71 1 7 1620 1571 191 66 154 chr5 135710779 135711170 -16826089 - RLTR18B LTR ERVK -142 370 15 7 1620 186 43 0 0 chr5 135711326 135711349 -16825910 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 7 1620 775 201 14 7 chr5 135711349 135711494 -16825765 - B1_Mur3 SINE Alu -3 146 1 7 1620 578 243 98 62 chr5 135711497 135711690 -16825569 - B3 SINE B2 -6 210 11 7 1620 1121 30 0 0 chr5 135711768 135711900 -16825359 - B1_Mus1 SINE Alu -16 132 1 7 1620 513 127 220 0 chr5 135712369 135712484 -16824775 - B1_Mur3 SINE Alu 0 149 11 7 1620 435 248 28 19 chr5 135713021 135713128 -16824131 - PB1D9 SINE Alu -8 112 5 7 1620 255 358 44 35 chr5 135713356 135713469 -16823790 + B4A SINE B4 169 282 -10 7 1620 306 322 0 0 chr5 135713476 135713591 -16823668 + PB1D7 SINE Alu 1 115 -5 7 1620 192 77 0 0 chr5 135713731 135713757 -16823502 + (CTGTG)n Simple_repeat Simple_repeat 3 28 0 7 1620 690 259 62 5 chr5 135713961 135714155 -16823104 + ID_B1 SINE B4 1 205 -19 7 1620 22 0 0 0 chr5 135714372 135714394 -16822865 + GC_rich Low_complexity Low_complexity 1 22 0 7 1620 569 27 0 0 chr5 135714394 135714467 -16822792 - B1_Mus2 SINE Alu -9 138 66 7 1620 598 232 130 16 chr5 135714465 135714649 -16822610 - B3 SINE B2 -1 215 11 7 1620 286 175 38 17 chr5 135714705 135714790 -16822469 - B1_Mm SINE Alu 0 147 34 7 1620 186 43 0 0 chr5 135714795 135714818 -16822441 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1620 848 246 52 0 chr5 135714828 135715019 -16822240 - B3 SINE B2 -15 201 1 7 1620 249 159 0 0 chr5 135715948 135715992 -16821267 + GA-rich Low_complexity Low_complexity 2 45 0 7 1620 408 369 6 22 chr5 135716178 135716358 -16820901 + B3A SINE B2 3 179 -19 7 1620 486 258 0 8 chr5 135716967 135717088 -16820171 - B1_Mur2 SINE Alu -8 141 22 7 1620 24 53 0 0 chr5 135719381 135719419 -16817840 + AT_rich Low_complexity Low_complexity 1 38 0 7 1620 1034 49 0 27 chr5 135719470 135719617 -16817642 - B1_Mus1 SINE Alu 0 148 6 7 1620 444 179 0 132 chr5 135719509 135719638 -16817621 - MT2B LTR ERVL -337 264 153 7 1620 291 225 0 27 chr5 135722670 135722743 -16814516 + ID4 SINE ID 10 80 -3 7 1620 509 167 223 8 chr5 135722914 135723035 -16814224 + B1_Mm SINE Alu 1 147 0 7 1620 222 308 13 13 chr5 135723127 135723206 -16814053 + B4A SINE B4 19 97 -195 7 1620 360 298 105 0 chr5 135723808 135723922 -16813337 - RSINE1 SINE B4 -37 128 3 7 1620 21 0 0 0 chr5 135723928 135723949 -16813310 + AT_rich Low_complexity Low_complexity 1 21 0 7 1620 688 271 6 24 chr5 135723963 135724133 -16813126 - ID_B1 SINE B4 -56 168 2 7 1620 429 297 50 25 chr5 135724252 135724411 -16812848 - RSINE1 SINE B4 0 165 3 7 1620 231 146 0 0 chr5 135727039 135727080 -16810179 + (CCG)n Simple_repeat Simple_repeat 2 42 0 7 1620 411 95 243 0 chr5 135727472 135727546 -16809713 - ID_B1 SINE B4 -4 220 129 7 1620 1314 80 31 31 chr5 135727587 135727780 -16809479 - B2_Mm1a SINE B2 0 193 1 7 1620 411 83 0 0 chr5 135727906 135727966 -16809293 + (TG)n Simple_repeat Simple_repeat 1 60 0 7 1620 378 241 35 35 chr5 135727991 135728107 -16809152 - RSINE1 SINE B4 -48 117 2 8 1620 925 173 113 20 chr5 135728146 135728341 -16808918 - B3 SINE B2 -3 213 1 8 1620 331 235 122 0 chr5 135728345 135728443 -16808816 - ID_B1 SINE B4 0 224 115 8 1620 753 43 0 0 chr5 135728619 135728712 -16808547 + (CA)n Simple_repeat Simple_repeat 1 93 0 8 1620 643 240 20 7 chr5 135729005 135729156 -16808103 + B4A SINE B4 1 153 -139 8 1620 198 0 0 0 chr5 135729224 135729246 -16808013 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1620 302 271 188 106 chr5 135730316 135730572 -16806687 + B4 SINE B4 2 278 -14 8 1620 375 23 0 0 chr5 135730577 135730621 -16806638 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1620 609 283 21 0 chr5 135730768 135730913 -16806346 - RSINE1 SINE B4 -15 150 3 8 1620 311 244 167 8 chr5 135730927 135730951 -16806308 - L1M5 LINE L1 -2912 3234 3209 8 1620 797 259 10 40 chr5 135730951 135731152 -16806107 - B3A SINE B2 -3 195 1 8 1620 311 244 167 8 chr5 135731152 135731259 -16806000 - L1M5 LINE L1 -2938 3208 3082 8 1620 243 146 0 0 chr5 135731259 135731300 -16805959 + (TCC)n Simple_repeat Simple_repeat 3 43 0 8 1620 881 167 0 14 chr5 135731302 135731448 -16805811 - B1_Mur3 SINE Alu -1 148 5 8 1620 309 286 20 54 chr5 135731465 135731613 -16805646 + ID_B1 SINE B4 79 221 -3 8 1620 562 194 25 16 chr5 135731480 135731618 -16805641 + B1_Mur2 SINE Alu 3 149 0 8 1620 495 269 36 51 chr5 135731617 135731754 -16805505 + B1F1 SINE Alu 1 135 -14 8 1620 334 283 58 148 chr5 135731619 135731876 -16805383 + MT2B LTR ERVL 167 400 -201 8 1620 2034 117 33 47 chr5 135731968 135732327 -16804932 - ORR1B1 LTR MaLR 0 394 41 8 1620 823 167 15 8 chr5 135732333 135732466 -16804793 - B1_Mur1 SINE Alu -15 134 1 8 1620 305 355 0 36 chr5 135732550 135732661 -16804598 - RSINE1 SINE B4 0 165 59 8 1620 249 109 0 0 chr5 135732693 135732739 -16804520 + (TCTG)n Simple_repeat Simple_repeat 4 49 0 8 1620 319 185 309 0 chr5 135732768 135732849 -16804410 - RSINE1 SINE B4 -57 108 3 8 1620 394 214 27 19 chr5 135732885 135732992 -16804267 - PB1D9 SINE Alu -1 147 36 8 1620 252 326 10 50 chr5 135732998 135733037 -16804222 + polypyrimidine Low_complexity Low_complexity 58 96 0 8 1620 1079 83 14 20 chr5 135733037 135733185 -16804074 - B1_Mus1 SINE Alu 0 148 2 8 1620 1318 40 11 11 chr5 135733186 135733363 -16803896 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 8 1620 252 326 10 50 chr5 135733363 135733421 -16803838 + polypyrimidine Low_complexity Low_complexity 1 57 0 8 1620 533 194 2 88 chr5 135733421 135733552 -16803707 - B1_Mus1 SINE Alu -16 132 13 8 1620 402 284 52 0 chr5 135733799 135733933 -16803326 + B1_Mus1 SINE Alu 8 148 0 8 1620 551 200 8 42 chr5 135733817 135733937 -16803322 + ID_B1 SINE B4 108 223 -1 8 1620 182 208 19 0 chr5 135733946 135733999 -16803260 + G-rich Low_complexity Low_complexity 4 57 0 8 1620 566 28 14 0 chr5 135734015 135734087 -16803172 + (GA)n Simple_repeat Simple_repeat 2 74 0 8 1620 288 130 0 0 chr5 135734483 135734529 -16802730 + (A)n Simple_repeat Simple_repeat 1 46 0 8 1620 21 0 0 0 chr5 135734753 135734774 -16802485 + GC_rich Low_complexity Low_complexity 1 21 0 8 1620 2305 89 12 12 chr5 135735130 135735471 -16801788 - MTB_Mm LTR MaLR -66 341 1 8 1620 415 283 0 66 chr5 135735549 135735670 -16801589 + PB1D10 SINE Alu 5 117 0 8 1620 483 220 0 0 chr5 135735685 135735952 -16801307 + (TG)n Simple_repeat Simple_repeat 1 267 0 8 1620 461 297 29 0 chr5 135735952 135736090 -16801169 + RSINE1 SINE B4 15 156 -9 8 1620 225 0 0 0 chr5 135736090 135736115 -16801144 + (CGTG)n Simple_repeat Simple_repeat 3 27 0 8 1620 345 164 30 0 chr5 135736115 135736182 -16801077 - HAL1-3A_ME LINE L1 -846 2012 1944 8 1620 690 161 32 0 chr5 135736186 135736310 -16800949 + B1_Mur2 SINE Alu 1 128 -21 8 1620 279 133 0 0 chr5 135736310 135736355 -16800904 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1620 851 205 130 0 chr5 135737267 135737452 -16799807 - B3 SINE B2 -6 210 2 8 1620 1380 101 5 11 chr5 135737515 135737705 -16799554 - B2_Mm1t SINE B2 -4 189 1 8 1620 1421 61 28 11 chr5 135737711 135737893 -16799366 - B2_Mm2 SINE B2 -9 186 2 8 1620 868 199 0 0 chr5 135737986 135738127 -16799132 + B1_Mur1 SINE Alu 1 141 -8 8 1620 517 226 65 35 chr5 135738201 135738371 -16798888 + B3A SINE B2 23 197 -1 8 1620 239 200 169 36 chr5 135738493 135738576 -16798683 - PB1D10 SINE Alu -1 116 23 8 1620 520 265 14 3 chr5 135738580 135738718 -16798541 - B3 SINE B2 -33 165 26 8 1620 721 164 0 23 chr5 135738757 135738888 -16798371 + B1_Mus2 SINE Alu 20 147 0 8 1620 24 0 0 0 chr5 135738888 135738912 -16798347 + AT_rich Low_complexity Low_complexity 1 24 0 8 1620 884 123 0 0 chr5 135738918 135739048 -16798211 + B3 SINE B2 1 130 -86 8 1620 387 105 0 0 chr5 135739078 135739135 -16798124 + (TA)n Simple_repeat Simple_repeat 1 57 0 8 1620 734 60 10 0 chr5 135739135 135739234 -16798025 + (GA)n Simple_repeat Simple_repeat 2 102 0 8 1620 239 307 36 86 chr5 135739305 135739444 -16797815 - YREP_Mm Unknown Unknown -1499 313 182 8 1620 639 186 24 0 chr5 135739325 135739449 -16797810 + ID_B1 SINE B4 98 224 0 8 1620 404 290 14 0 chr5 135739593 135739731 -16797528 + (TGAA)n Simple_repeat Simple_repeat 3 142 0 8 1620 656 310 50 20 chr5 135741040 135741241 -16796018 + ID_B1 SINE B4 9 215 -9 8 1620 668 100 0 8 chr5 135741415 135741536 -16795723 + (TC)n Simple_repeat Simple_repeat 1 120 0 8 1620 1355 159 44 69 chr5 135741630 135741657 -16795602 - RLTR11A LTR ERVK -2 526 500 8 1620 1208 61 0 33 chr5 135741657 135741810 -16795449 - B1_Mus1 SINE Alu 0 148 1 8 1620 1355 159 44 69 chr5 135741810 135741940 -16795319 - RLTR11A LTR ERVK -29 499 373 8 1620 874 107 238 7 chr5 135741940 135742091 -16795168 - B2_Mm2 SINE B2 -9 186 1 8 1620 1355 159 44 69 chr5 135742091 135742249 -16795010 - RLTR11A LTR ERVK -156 372 218 8 1620 1370 216 75 111 chr5 135742249 135742842 -16794417 - RLTR20B3 LTR ERVK 0 563 6 8 1620 1320 135 14 0 chr5 135742852 135743059 -16794200 - RLTR11A LTR ERVK -315 213 4 8 1620 275 216 32 95 chr5 135743134 135743323 -16793936 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 8 1620 387 231 22 55 chr5 135743344 135743527 -16793732 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 8 1620 375 221 23 58 chr5 135743630 135743803 -16793456 + (TCCA)n Simple_repeat Simple_repeat 4 170 0 8 1620 465 274 182 63 chr5 135744473 135744632 -16792627 - MTD LTR MaLR -14 405 210 8 1620 630 0 0 0 chr5 135744632 135744702 -16792557 + (TC)n Simple_repeat Simple_repeat 1 70 0 8 1620 465 277 177 67 chr5 135744702 135744835 -16792424 - MTD LTR MaLR -212 209 88 8 1620 1223 54 0 0 chr5 135745993 135746140 -16791119 + B1_Mus2 SINE Alu 1 147 0 8 1620 985 243 14 27 chr5 135746356 135746576 -16790683 - ID_B1 SINE B4 -7 217 1 8 1620 339 175 95 0 chr5 135746578 135746641 -16790618 - PB1D10 SINE Alu -5 112 44 8 1620 528 0 42 0 chr5 135746760 135746832 -16790427 + (TG)n Simple_repeat Simple_repeat 1 75 0 8 1620 892 203 58 29 chr5 135747272 135747480 -16789779 - ID_B1 SINE B4 0 224 11 8 1620 504 263 9 0 chr5 135747505 135747619 -16789640 - PB1D10 SINE Alu -2 115 1 8 1620 771 259 140 8 chr5 135748179 135748436 -16788823 + B4A SINE B4 2 292 0 8 1620 189 0 0 0 chr5 135748447 135748468 -16788791 + (CA)n Simple_repeat Simple_repeat 2 22 0 8 1620 807 204 7 7 chr5 135748482 135748610 -16788649 + B1_Mur2 SINE Alu 1 129 -20 8 1620 300 83 0 0 chr5 135748610 135748658 -16788601 + (CAGAGA)n Simple_repeat Simple_repeat 2 49 0 8 1620 807 204 7 7 chr5 135748658 135748672 -16788587 + B1_Mur2 SINE Alu 130 143 -6 8 1620 335 157 0 14 chr5 135748674 135748745 -16788514 + GA-rich Low_complexity Low_complexity 6 75 0 8 1620 915 225 16 0 chr5 135748801 135748992 -16788267 + B3 SINE B2 18 211 -5 8 1620 479 275 23 0 chr5 135749008 135749139 -16788120 - MTE2b LTR MaLR -189 190 57 8 1620 477 0 0 0 chr5 135749502 135749555 -16787704 + (TC)n Simple_repeat Simple_repeat 1 53 0 8 1620 516 32 0 0 chr5 135749621 135749683 -16787576 + (TG)n Simple_repeat Simple_repeat 2 63 0 8 1620 580 297 40 70 chr5 135749728 135749956 -16787303 - B4 SINE B4 -64 228 8 8 1620 202 265 0 0 chr5 135749960 135750009 -16787250 + CT-rich Low_complexity Low_complexity 4 52 0 8 1620 667 231 0 40 chr5 135750010 135750159 -16787100 - B1_Mur1 SINE Alu -6 143 1 8 1620 431 296 82 7 chr5 135750203 135750349 -16786910 - RSINE1 SINE B4 -1 164 8 8 1620 385 281 111 0 chr5 135750383 135750516 -16786743 - B1F SINE Alu -1 148 1 8 1620 603 232 58 21 chr5 135750649 135750838 -16786421 + L1M4b LINE L1 110 305 -7029 8 1620 297 277 223 0 chr5 135750947 135751059 -16786200 - ID_B1 SINE B4 -7 217 81 8 1620 358 322 59 20 chr5 135751009 135751161 -16786098 + B4 SINE B4 47 204 -88 8 1620 456 202 0 21 chr5 135751176 135751272 -16785987 + RSINE1 SINE B4 2 95 -70 8 1620 363 233 46 11 chr5 135751373 135751460 -16785799 + PB1D10 SINE Alu 23 112 -5 8 1620 1145 75 0 7 chr5 135751470 135751617 -16785642 + B1_Mm SINE Alu 2 147 0 8 1620 22 0 0 0 chr5 135751617 135751639 -16785620 + AT_rich Low_complexity Low_complexity 1 22 0 8 1620 269 242 188 10 chr5 135751639 135751735 -16785524 + ID_B1 SINE B4 44 156 -68 8 1620 492 219 47 39 chr5 135751834 135751962 -16785297 - RSINE1 SINE B4 -35 130 2 8 1620 359 272 52 9 chr5 135751962 135752073 -16785186 - B4A SINE B4 -62 230 115 8 1620 180 0 0 0 chr5 135752339 135752359 -16784900 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1620 379 248 87 55 chr5 135752834 135752998 -16784261 + B4A SINE B4 1 158 -66 8 1620 698 107 0 15 chr5 135753157 135753290 -16783969 + (TCTCTG)n Simple_repeat Simple_repeat 2 132 0 8 1620 1682 36 0 0 chr5 135753333 135753526 -16783733 + B2_Mm1a SINE B2 1 193 0 9 1620 399 262 149 0 chr5 135753697 135753838 -16783421 + RSINE1 SINE B4 3 164 -1 9 1620 792 145 72 7 chr5 135754040 135754179 -16783080 - B1_Mur2 SINE Alu -1 148 1 9 1620 435 205 70 14 chr5 135754214 135754374 -16782885 - B3 SINE B2 0 198 26 9 1620 483 254 69 0 chr5 135754428 135754558 -16782701 - B1F SINE Alu -6 143 5 9 1620 508 271 23 0 chr5 135754788 135754917 -16782342 - RSINE1 SINE B4 -28 137 6 9 1620 396 0 0 0 chr5 135755092 135755136 -16782123 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 9 1620 408 336 8 15 chr5 135755136 135755269 -16781990 - ID_B1 SINE B4 -9 215 84 9 1620 427 182 0 74 chr5 135755308 135755403 -16781856 - B1_Mur1 SINE Alu -41 108 21 9 1620 866 207 0 0 chr5 135755417 135755562 -16781697 + B1_Mur1 SINE Alu 5 149 0 9 1620 265 244 22 34 chr5 135755675 135755718 -16781541 - MLT1A1 LTR MaLR -320 88 48 9 1620 527 58 26 88 chr5 135755718 135755832 -16781427 - L1_Mus3 LINE L1 -7 6631 6525 9 1620 265 244 22 34 chr5 135755832 135755877 -16781382 - MLT1A1 LTR MaLR -361 47 2 9 1620 298 195 143 50 chr5 135756102 135756221 -16781038 + MLT1K LTR MaLR 146 275 -320 9 1620 697 109 36 18 chr5 135756241 135756353 -16780906 - PB1D9 SINE Alu -6 114 1 9 1620 1421 145 9 13 chr5 135756713 135756937 -16780322 + URR1B DNA MER1_type 3 225 0 9 1620 397 280 32 0 chr5 135757066 135757191 -16780068 - B1F1 SINE Alu -9 140 12 9 1620 507 312 9 82 chr5 135757184 135757404 -16779855 - ID_B1 SINE B4 -20 204 1 9 1620 326 286 44 0 chr5 135757361 135757452 -16779807 - ZP3AR Satellite Satellite -74 138 44 9 1620 340 264 30 81 chr5 135757468 135757567 -16779692 - PB1D10 SINE Alu -21 96 3 9 1620 279 354 0 0 chr5 135757671 135757753 -16779506 - ID4_ SINE ID 0 83 2 9 1620 411 308 13 53 chr5 135757979 135758130 -16779129 + RSINE1 SINE B4 15 159 -6 9 1620 1601 27 0 16 chr5 135758182 135758370 -16778889 - B2_Mm1a SINE B2 -8 185 1 9 1620 1327 241 16 116 chr5 135759243 135759703 -16777556 - MTD LTR MaLR -14 405 5 9 1620 867 217 8 138 chr5 135759935 135760175 -16777084 + B3 SINE B2 1 209 -7 9 1620 599 206 99 0 chr5 135760194 135760325 -16776934 + B1_Mur1 SINE Alu 1 144 -5 9 1620 326 262 0 12 chr5 135760345 135760426 -16776833 - ID4_ SINE ID -3 80 1 9 1620 1060 56 0 7 chr5 135760491 135760634 -16776625 - B1_Mur4 SINE Alu 0 150 9 9 1620 481 258 60 116 chr5 135760494 135760768 -16776491 - B4 SINE B4 -70 222 1 9 1620 959 268 9 4 chr5 135761343 135761568 -16775691 + B4A SINE B4 6 231 -61 9 1620 1193 68 0 0 chr5 135761607 135761754 -16775505 + B1_Mus2 SINE Alu 1 147 0 9 1620 385 202 117 0 chr5 135761779 135761873 -16775386 + B1_Mur2 SINE Alu 32 136 -13 9 1620 911 131 36 0 chr5 135761889 135762026 -16775233 + B1_Mur4 SINE Alu 2 143 -7 9 1620 208 26 0 93 chr5 135762380 135762423 -16774836 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 9 1620 237 254 43 29 chr5 135762677 135762746 -16774513 + ID4_ SINE ID 3 72 -11 9 1620 562 206 29 29 chr5 135763302 135763442 -16773817 + B1F SINE Alu 1 140 -9 9 1620 487 211 6 101 chr5 135763442 135763460 -16773799 + ID_B1 SINE B4 82 224 0 9 1620 1457 83 0 11 chr5 135763460 135763681 -16773578 + ZP3AR Satellite Satellite 1 218 0 9 1620 2683 31 6 3 chr5 135764035 135764356 -16772903 - L1Md_F3 LINE L1 0 6584 6263 9 1620 627 250 61 22 chr5 135764903 135765083 -16772176 - B3A SINE B2 0 198 12 9 1620 873 174 7 0 chr5 135765084 135765222 -16772037 - B1_Mur1 SINE Alu -7 142 4 9 1620 243 163 0 0 chr5 135765270 135765313 -16771946 - MTEa LTR MaLR -326 53 11 9 1620 1045 75 29 0 chr5 135765494 135765668 -16771591 + (GA)n Simple_repeat Simple_repeat 1 179 0 9 1620 753 108 22 28 chr5 135765668 135765849 -16771410 + GA-rich Low_complexity Low_complexity 1 180 0 9 1620 1035 46 22 28 chr5 135765873 135766053 -16771206 + (GA)n Simple_repeat Simple_repeat 2 180 0 9 1620 357 273 74 0 chr5 135766375 135766496 -16770763 + B1F SINE Alu 11 140 -9 9 1620 261 0 0 0 chr5 135767218 135767247 -16770012 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1620 531 0 0 0 chr5 135767730 135767789 -16769470 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1620 759 194 153 6 chr5 135768315 135768491 -16768768 - B3 SINE B2 -6 210 9 9 1620 338 314 156 6 chr5 135768512 135768561 -16768698 - B4 SINE B4 -15 277 162 9 1620 527 165 0 0 chr5 135768561 135768652 -16768607 - PB1D9 SINE Alu 0 120 30 9 1620 338 314 156 6 chr5 135768652 135768685 -16768574 - B4 SINE B4 -15 161 79 9 1620 1465 60 43 0 chr5 135768842 135769027 -16768232 - B2_Mm2 SINE B2 -2 193 1 9 1620 1855 197 65 8 chr5 135769656 135770110 -16767149 + RMER20A LTR ERVK 4 516 0 9 1620 270 286 58 23 chr5 135770206 135770292 -16766967 + B4A SINE B4 1 89 -203 9 1620 485 226 28 9 chr5 135770358 135770465 -16766794 + B4A SINE B4 104 212 -80 9 1620 515 196 29 0 chr5 135770473 135770575 -16766684 + PB1D9 SINE Alu 9 113 -7 9 1620 1331 253 35 51 chr5 135770579 135770897 -16766362 + ORR1D2 LTR MaLR 6 324 -46 9 1620 1274 95 50 0 chr5 135770897 135771076 -16766183 - B2_Mm2 SINE B2 -7 188 1 9 1620 1331 253 35 51 chr5 135771076 135771128 -16766131 + ORR1D2 LTR MaLR 325 370 0 9 1620 2539 156 73 56 chr5 135771420 135771978 -16765281 - RMER4B LTR ERVK -1 584 17 9 1620 1390 86 16 0 chr5 135772083 135772269 -16764990 + B2_Mm2 SINE B2 2 190 -5 9 1620 330 319 52 29 chr5 135773041 135773215 -16764044 + B4A SINE B4 66 243 -49 9 1620 801 309 82 0 chr5 135774299 135774568 -16762691 + B4A SINE B4 2 292 0 9 1620 315 0 0 0 chr5 135774580 135774615 -16762644 + (CA)n Simple_repeat Simple_repeat 1 35 0 9 1620 552 359 48 44 chr5 135774813 135775267 -16761992 + RLTR4_MM-int LTR ERV1 3876 4291 -3265 9 1620 737 338 8 12 chr5 135775604 135775949 -16761310 + MURVY-int LTR ERV1 4727 5017 -2435 9 1620 673 94 80 62 chr5 135775996 135776109 -16761150 + PB1D9 SINE Alu 2 116 -4 9 1620 962 190 110 110 chr5 135776191 135776279 -16760980 + RMER21A LTR ERV1 443 551 -396 9 1620 1167 75 7 0 chr5 135776279 135776426 -16760833 + B1_Mus1 SINE Alu 1 148 0 9 1620 962 190 110 110 chr5 135776426 135776627 -16760632 + RMER21A LTR ERV1 552 732 -215 9 1620 652 297 37 31 chr5 135777263 135777590 -16759669 + RLTR15 LTR ERVK 1 329 -30 9 1620 266 234 31 0 chr5 135778185 135778249 -16759010 + RLTR19-int LTR ERVK 50 115 -8844 9 1620 3113 283 76 56 chr5 135778634 135778917 -16758342 + MYSERV-int LTR ERVK 3785 4067 -2483 9 1620 1226 59 118 0 chr5 135778917 135779086 -16758173 + B2_Mm2 SINE B2 1 189 -6 9 1620 3113 283 76 56 chr5 135779086 135779865 -16757394 + MYSERV-int LTR ERVK 4068 4875 -1675 9 1620 1580 49 0 0 chr5 135779865 135780049 -16757210 - B2_Mm1a SINE B2 -9 184 1 9 1620 3113 283 76 56 chr5 135780049 135780296 -16756963 + MYSERV-int LTR ERVK 4876 5121 -1429 9 1620 400 249 52 60 chr5 135780297 135780505 -16756754 + RMER4A LTR ERVK 246 561 -24 9 1620 1194 170 161 50 chr5 135780505 135780865 -16756394 + MYSERV-int LTR ERVK 5335 5734 -816 9 1620 1730 334 53 32 chr5 135780869 135781434 -16755825 + RodERV21-int LTR ERV1 3376 3949 -1042 9 1620 474 18 0 0 chr5 135781434 135781489 -16755770 + (TA)n Simple_repeat Simple_repeat 2 56 0 9 1620 1730 334 53 32 chr5 135781489 135781971 -16755288 + RodERV21-int LTR ERV1 3950 4444 -547 9 1620 800 316 36 34 chr5 135781999 135782356 -16754903 + RodERV21-int LTR ERV1 4502 4859 -132 9 1620 1475 54 16 0 chr5 135783107 135783292 -16753967 + B2_Mm1a SINE B2 2 189 -4 9 1620 341 83 47 62 chr5 135783592 135783656 -16753603 + RLTR19-int LTR ERVK 1342 1404 -1834 9 1620 3122 203 32 69 chr5 135783689 135784520 -16752739 + RLTR19-int LTR ERVK 1895 2996 -3141 9 1620 1235 161 22 31 chr5 135784582 135784807 -16752452 + RMER17C-int LTR ERVK 1965 2187 -1051 9 1620 2747 198 137 116 chr5 135784849 135785253 -16752006 + RMER17C-int LTR ERVK 2226 2793 -3344 9 1620 242 211 19 0 chr5 135785253 135785305 -16751954 - LSU-rRNA_Hsa rRNA rRNA -782 4253 4201 9 1620 2747 198 137 116 chr5 135785305 135785931 -16751328 + RMER17C-int LTR ERVK 2794 3676 -2461 9 1620 240 250 0 71 chr5 135786066 135786165 -16751094 + CT-rich Low_complexity Low_complexity 2 93 0 9 1620 284 288 29 94 chr5 135786273 135786411 -16750848 + RMER10B LTR ERVL 270 398 0 9 1620 22 0 0 0 chr5 135786418 135786440 -16750819 + AT_rich Low_complexity Low_complexity 1 22 0 9 1620 333 167 30 0 chr5 135786787 135786853 -16750406 + RMER17C-int LTR ERVK 3757 3824 -2313 9 1620 329 110 27 27 chr5 135787935 135788010 -16749249 + CT-rich Low_complexity Low_complexity 1 75 0 9 1620 5198 86 91 22 chr5 135788574 135789094 -16748165 + L1VL2 LINE L1 221 792 -5543 9 1620 1414 92 0 0 chr5 135789094 135789279 -16747980 + B2_Mm2 SINE B2 1 185 -10 9 1620 5896 72 47 20 chr5 135789279 135790297 -16746962 + L1VL2 LINE L1 793 1826 -1789 9 1620 309 250 0 0 chr5 135790441 135790517 -16746742 - PB1D10 SINE Alu -2 115 40 9 1621 26 0 0 0 chr5 135790681 135790707 -16746552 + AT_rich Low_complexity Low_complexity 1 26 0 9 1621 601 279 72 123 chr5 135791428 135791972 -16745287 + RMER17C-int LTR ERVK 81 596 -2642 9 1621 4520 253 53 44 chr5 135791797 135792328 -16744931 + RodERV21-int LTR ERV1 682 1214 -3777 9 1621 783 0 0 0 chr5 135792328 135792415 -16744844 + (TC)n Simple_repeat Simple_repeat 1 87 0 9 1621 4520 253 53 44 chr5 135792415 135793221 -16744038 + RodERV21-int LTR ERV1 1215 2022 -2969 9 1621 500 0 0 16 chr5 135793221 135793282 -16743977 + (CAAAA)n Simple_repeat Simple_repeat 1 60 0 9 1621 4520 253 53 44 chr5 135793282 135793376 -16743883 + RodERV21-int LTR ERV1 2023 2126 -2865 9 1621 651 144 0 0 chr5 135794189 135794300 -16742959 + B1_Mus2 SINE Alu 36 146 -1 9 1621 752 268 29 5 chr5 135794313 135794523 -16742736 + ID_B1 SINE B4 2 216 -8 9 1621 290 242 0 43 chr5 135794574 135794643 -16742616 + ID4 SINE ID 11 76 -7 9 1621 1229 48 0 0 chr5 135794735 135794882 -16742377 + B1_Mus2 SINE Alu 1 147 0 9 1621 398 196 9 102 chr5 135794890 135794998 -16742261 - B2_Mm2 SINE B2 -97 98 1 9 1621 783 195 356 36 chr5 135795099 135795416 -16741843 + RLTR33 LTR ERVK 175 592 -86 9 1621 247 191 175 0 chr5 135795600 135795663 -16741596 - RSINE1 SINE B4 -20 145 72 9 1621 646 233 20 13 chr5 135795998 135796150 -16741109 + RodERV21-int LTR ERV1 163 315 -4676 9 1621 356 223 53 23 chr5 135797358 135797491 -16739768 + MYSERV-int LTR ERVK 5339 5475 -1075 9 1621 1302 77 60 0 chr5 135797868 135798051 -16739208 + B2_Mm2 SINE B2 2 195 0 9 1621 317 243 123 41 chr5 135798249 135798395 -16738864 + RLTR19-int LTR ERVK 1177 1334 -1904 9 1621 23 33 0 0 chr5 135798422 135798452 -16738807 + AT_rich Low_complexity Low_complexity 1 30 0 1 1621 347 169 31 0 chr5 135798463 135798528 -16738731 + RLTR19-int LTR ERVK 1358 1424 -1814 9 1621 4226 191 135 118 chr5 135798582 135798715 -16738544 + RLTR19-int LTR ERVK 2218 2301 -3836 9 1621 1178 64 0 0 chr5 135798715 135798856 -16738403 + B1_Mus1 SINE Alu 2 142 -6 1 1621 4226 186 129 113 chr5 135798856 135800221 -16737038 + RLTR19-int LTR ERVK 2302 3676 -2461 9 1621 492 167 19 56 chr5 135800221 135800329 -16736930 - LSU-rRNA_Hsa rRNA rRNA -730 4305 4202 1 1621 2077 218 98 53 chr5 135800329 135800954 -16736305 + RLTR19-int LTR ERVK 2586 3238 0 9 1621 21 0 0 0 chr5 135801294 135801315 -16735944 + AT_rich Low_complexity Low_complexity 1 21 0 1 1621 604 38 0 0 chr5 135801461 135801541 -16735718 - B1_Mus2 SINE Alu -21 126 47 1 1621 578 263 79 0 chr5 135801655 135801807 -16735452 + ID_B1 SINE B4 15 178 -46 1 1621 277 304 65 0 chr5 135801728 135801820 -16735439 + B1F2 SINE Alu 18 115 -34 1 1621 190 186 45 23 chr5 135801883 135801927 -16735332 - MIR SINE MIR -83 125 81 1 1621 377 236 125 54 chr5 135802952 135803064 -16734195 + PB1D9 SINE Alu 1 120 0 1 1621 498 288 32 68 chr5 135803135 135803325 -16733934 + B4A SINE B4 109 291 -1 1 1621 552 323 26 0 chr5 135803371 135803526 -16733733 - RSINE1 SINE B4 -5 160 2 1 1621 655 97 24 5 chr5 135803589 135803701 -16733558 + B1_Mus2 SINE Alu 1 147 0 1 1621 1330 101 0 0 chr5 135803726 135803915 -16733344 + B2_Mm2 SINE B2 2 190 -5 1 1621 225 0 0 0 chr5 135804372 135804397 -16732862 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1621 240 35 0 0 chr5 135804752 135804781 -16732478 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1 1621 317 197 0 16 chr5 135804798 135804860 -16732399 - B1_Mus2 SINE Alu -9 138 78 1 1621 283 323 11 0 chr5 135804866 135804959 -16732300 + MER21-int LTR ERV1 1699 1792 -2399 1 1621 406 258 64 8 chr5 135805036 135805161 -16732098 + MER21-int LTR ERV1 2503 2634 -1557 1 1621 252 354 10 0 chr5 135805381 135805477 -16731782 + PB1D10 SINE Alu 4 100 -17 1 1621 377 173 0 13 chr5 135805486 135805562 -16731697 - B1_Mus2 SINE Alu -5 142 68 1 1621 625 237 193 42 chr5 135805610 135805848 -16731411 + B4 SINE B4 2 275 -17 1 1621 366 267 30 0 chr5 135806149 135806250 -16731009 - RSINE1 SINE B4 -60 105 2 1 1621 861 133 41 20 chr5 135806423 135806569 -16730690 + B1_Mur3 SINE Alu 1 149 0 1 1621 361 238 218 0 chr5 135806592 135806693 -16730566 + B1_Mur1 SINE Alu 6 128 -21 1 1621 281 325 100 78 chr5 135806693 135806772 -16730487 + B4A SINE B4 91 274 -18 1 1621 14212 87 33 9 chr5 135807082 135809846 -16727413 + L1VL2 LINE L1 162 2988 -627 1 1621 192 40 0 0 chr5 135810152 135810177 -16727082 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1621 1228 48 0 0 chr5 135810177 135810324 -16726935 - B1_Mus2 SINE Alu 0 147 1 1 1621 26 0 0 0 chr5 135810569 135810595 -16726664 + AT_rich Low_complexity Low_complexity 1 26 0 1 1621 257 180 22 22 chr5 135810856 135810947 -16726312 + CT-rich Low_complexity Low_complexity 2 92 0 1 1621 305 127 380 0 chr5 135811190 135811261 -16725998 + B1_Mur2 SINE Alu 40 137 -12 1 1621 243 0 0 0 chr5 135811261 135811288 -16725971 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1621 1239 189 46 150 chr5 135811293 135811521 -16725738 + ORR1D1 LTR MaLR 1 195 -179 1 1621 941 128 0 51 chr5 135811521 135811677 -16725582 + B1_Mus1 SINE Alu 1 148 0 1 1621 1239 191 59 137 chr5 135811677 135811842 -16725417 + ORR1D1 LTR MaLR 196 352 -7 1 1621 271 293 13 0 chr5 135811857 135811932 -16725327 + RSINE1 SINE B4 3 78 -87 1 1621 443 104 0 0 chr5 135812796 135812863 -16724396 - B1_Mur4 SINE Alu -50 100 34 1 1621 555 16 0 0 chr5 135812884 135812948 -16724311 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1621 537 292 100 25 chr5 135812968 135813168 -16724091 + ID_B1 SINE B4 3 217 -7 1 1621 504 276 78 7 chr5 135814183 135814325 -16722934 - RSINE1 SINE B4 -2 163 12 1 1621 180 0 0 0 chr5 135814436 135814456 -16722803 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1 1621 641 195 65 0 chr5 135814468 135814591 -16722668 - B1_Mus2 SINE Alu 0 147 17 1 1621 365 241 84 0 chr5 135814635 135814718 -16722541 - RSINE1 SINE B4 -12 153 64 1 1621 254 285 60 180 chr5 135814858 135815025 -16722234 + B4A SINE B4 48 194 -98 1 1621 592 258 234 9 chr5 135815541 135815768 -16721491 - B4 SINE B4 -14 278 1 1 1621 2071 107 0 16 chr5 135816162 135816484 -16720775 + ORR1A4 LTR MaLR 1 317 -12 1 1621 764 182 35 0 chr5 135816495 135816638 -16720621 + B1_Mur4 SINE Alu 2 149 -1 1 1621 812 207 42 6 chr5 135816678 135816843 -16720416 - B3A SINE B2 -26 172 2 1 1621 319 319 44 0 chr5 135816966 135817101 -16720158 + B3A SINE B2 50 190 -8 1 1621 798 165 0 14 chr5 135817135 135817276 -16719983 - B1_Mur2 SINE Alu -9 140 2 1 1621 739 240 58 34 chr5 135817291 135817498 -16719761 - B3 SINE B2 0 216 5 1 1621 725 207 0 29 chr5 135817513 135817652 -16719607 - B1_Mur4 SINE Alu -5 145 11 1 1621 508 173 159 226 chr5 135817665 135817786 -16719473 - ID_B1 SINE B4 0 224 152 1 1621 537 225 122 70 chr5 135817786 135817958 -16719301 - B3A SINE B2 -15 183 3 1 1621 508 173 159 226 chr5 135817958 135818075 -16719184 - ID_B1 SINE B4 -73 151 2 1 1621 1080 258 3 73 chr5 135818416 135818730 -16718529 - B4 SINE B4 0 292 1 1 1621 843 182 14 0 chr5 135818845 135818988 -16718271 + B1_Mur1 SINE Alu 2 146 -3 1 1621 476 193 83 0 chr5 135819010 135819119 -16718140 + PB1D7 SINE Alu 1 118 -2 1 1621 710 138 31 0 chr5 135819317 135819447 -16717812 + URR1B DNA MER1_type 92 225 0 1 1621 247 200 0 0 chr5 135819447 135819492 -16717767 - B4A SINE B4 -61 231 187 1 1621 1155 75 0 0 chr5 135819574 135819721 -16717538 + B1_Mus1 SINE Alu 2 148 0 1 1621 189 0 0 0 chr5 135819771 135819792 -16717467 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1 1621 656 271 26 68 chr5 135819796 135819986 -16717273 - B3A SINE B2 -16 182 1 1 1621 438 202 21 11 chr5 135819986 135820081 -16717178 - B4A SINE B4 -196 96 1 1 1621 431 171 64 37 chr5 135820082 135820191 -16717068 - PB1D10 SINE Alu -5 112 1 1 1621 958 171 56 79 chr5 135820262 135820478 -16716781 + B3 SINE B2 1 211 -5 1 1621 225 159 0 0 chr5 135821346 135821390 -16715869 + CT-rich Low_complexity Low_complexity 1 44 0 1 1621 732 157 60 0 chr5 135821390 135821524 -16715735 - B1_Mus1 SINE Alu -5 143 2 1 1621 251 246 16 47 chr5 135821617 135821681 -16715578 - ZP3AR Satellite Satellite -141 71 10 1 1621 902 213 38 52 chr5 135822410 135822623 -16714636 - B3 SINE B2 -6 210 1 1 1621 868 259 39 94 chr5 135822882 135823189 -16714070 - B4 SINE B4 -2 290 1 1 1621 220 132 0 26 chr5 135823394 135823433 -16713826 + B2_Mm2 SINE B2 5 42 -153 1 1621 342 239 109 0 chr5 135823434 135823526 -16713733 + B3 SINE B2 78 179 -37 1 1621 283 242 20 31 chr5 135823927 135824025 -16713234 + PB1D10 SINE Alu 8 104 -13 1 1621 242 304 70 18 chr5 135824025 135824041 -16713218 + B4 SINE B4 93 212 -80 1 1621 380 250 52 0 chr5 135824211 135824307 -16712952 + PB1D7 SINE Alu 20 120 0 1 1621 517 172 97 69 chr5 135824316 135824460 -16712799 + B1_Mur1 SINE Alu 2 149 0 1 1621 1194 45 0 6 chr5 135824470 135824627 -16712632 + B2_Mm2 SINE B2 2 157 -38 1 1621 249 33 0 0 chr5 135824629 135824659 -16712600 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1621 407 155 194 10 chr5 135824689 135824787 -16712472 + B1_Mur4 SINE Alu 29 144 -6 1 1621 194 0 39 0 chr5 135824789 135824815 -16712444 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1 1621 229 150 32 32 chr5 135824831 135824893 -16712366 + A-rich Low_complexity Low_complexity 1 62 0 1 1621 650 251 97 0 chr5 135824893 135825088 -16712171 + ID_B1 SINE B4 3 216 -8 1 1621 608 219 44 19 chr5 135825243 135825401 -16711858 + ID_B1 SINE B4 53 214 -10 1 1621 302 0 26 0 chr5 135825401 135825439 -16711820 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1621 216 179 0 0 chr5 135826245 135826284 -16710975 - ID2 SINE ID -40 43 5 1 1621 795 171 23 0 chr5 135826393 135826569 -16710690 + CT-rich Low_complexity Low_complexity 1 180 0 1 1621 641 206 8 15 chr5 135826575 135826708 -16710551 - B1_Mur1 SINE Alu -17 132 1 1 1621 316 224 13 13 chr5 135826806 135826883 -16710376 + ID4 SINE ID 6 82 -1 1 1621 419 270 122 14 chr5 135826897 135827036 -16710223 + RSINE1 SINE B4 10 163 -2 1 1621 324 0 0 0 chr5 135827048 135827084 -16710175 + (CATA)n Simple_repeat Simple_repeat 2 37 0 1 1621 501 261 29 7 chr5 135827202 135827341 -16709918 - ID_B1 SINE B4 -2 222 81 1 1621 310 274 18 54 chr5 135828086 135828198 -16709061 + ID_B1 SINE B4 9 116 -108 1 1621 771 164 0 0 chr5 135828295 135828435 -16708824 + B1_Mur3 SINE Alu 10 149 0 1 1621 946 184 80 28 chr5 135828550 135828763 -16708496 - URR1B DNA MER1_type -1 224 1 1 1621 224 313 22 67 chr5 135828816 135828866 -16708393 - ID_B1 SINE B4 -98 126 42 1 1621 247 205 0 0 chr5 135828866 135828905 -16708354 - ID4_ SINE ID -4 79 41 1 1621 200 195 0 24 chr5 135828974 135829016 -16708243 - MIRm SINE MIR -118 158 118 1 1621 420 238 12 0 chr5 135829779 135829863 -16707396 - RSINE1 SINE B4 -10 155 71 1 1621 463 196 68 10 chr5 135830103 135830206 -16707053 - B1F SINE Alu -29 120 12 1 1621 1387 147 9 30 chr5 135830433 135830664 -16706595 + URR1A DNA MER1_type 1 226 0 1 1621 38 51 0 0 chr5 135830769 135830828 -16706431 + AT_rich Low_complexity Low_complexity 1 59 0 1 1621 394 272 10 0 chr5 135830850 135830953 -16706306 + ZP3AR Satellite Satellite 45 148 -64 1 1621 396 159 11 79 chr5 135830953 135831042 -16706217 + ID4 SINE ID 1 83 0 1 1621 1370 210 53 39 chr5 135831337 135831645 -16705614 - MTEb LTR MaLR -37 342 21 1 1621 1430 86 5 0 chr5 135831645 135831832 -16705427 - B2_Mm1a SINE B2 -5 188 1 1 1621 1370 210 53 39 chr5 135831832 135831860 -16705399 - MTEb LTR MaLR -359 20 1 1 1621 564 264 42 36 chr5 135832004 135832169 -16705090 + B4A SINE B4 7 172 -120 1 1621 558 43 0 0 chr5 135832289 135832358 -16704901 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1621 434 188 0 12 chr5 135832418 135832499 -16704760 + ID_B1 SINE B4 126 205 -19 1 1621 1268 103 0 6 chr5 135832698 135832849 -16704410 + B2_Mm2 SINE B2 2 152 -43 1 1621 495 87 0 0 chr5 135832849 135832918 -16704341 + (CA)n Simple_repeat Simple_repeat 1 69 0 1 1621 1268 103 0 6 chr5 135832918 135832942 -16704317 + B2_Mm2 SINE B2 153 176 -19 1 1621 504 262 35 28 chr5 135833066 135833211 -16704048 + RSINE1 SINE B4 3 148 -17 1 1621 333 0 0 0 chr5 135833215 135833252 -16704007 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1621 233 0 62 0 chr5 135833256 135833288 -16703971 + (CAGAGA)n Simple_repeat Simple_repeat 1 34 0 1 1621 297 194 59 0 chr5 135833297 135833375 -16703884 - PB1D10 SINE Alu -49 100 16 1 1621 215 174 0 98 chr5 135833519 135833537 -16703722 + polypyrimidine Low_complexity Low_complexity 29 46 0 1 1621 895 57 217 25 chr5 135833537 135833698 -16703561 - B2_Mm2 SINE B2 0 195 4 1 1621 215 174 0 98 chr5 135833698 135833730 -16703529 + polypyrimidine Low_complexity Low_complexity 1 28 0 1 1621 688 221 59 26 chr5 135833730 135833900 -16703359 - B3 SINE B2 -1 215 59 1 1621 348 106 13 18 chr5 135833965 135834030 -16703229 - B2_Mm2 SINE B2 -83 115 46 1 1621 972 89 134 0 chr5 135834104 135834261 -16702998 - B2_Mm1t SINE B2 -14 179 2 1 1621 246 220 41 28 chr5 135834291 135834436 -16702823 + CT-rich Low_complexity Low_complexity 5 151 0 1 1621 254 262 128 23 chr5 135834474 135834560 -16702699 - PB1D10 SINE Alu -14 103 9 1 1621 1020 111 0 11 chr5 135834897 135834922 -16702337 - ZP3AR Satellite Satellite -40 172 149 1 1621 798 259 24 0 chr5 135834922 135835127 -16702132 - ID_B1 SINE B4 -14 210 1 1 1621 1557 51 5 8 chr5 135835127 135835572 -16701687 - ZP3AR Satellite Satellite -11 443 1 1 1621 330 194 0 0 chr5 135836069 135836136 -16701123 + CT-rich Low_complexity Low_complexity 2 68 0 1 1621 243 0 0 0 chr5 135836144 135836171 -16701088 + (TGG)n Simple_repeat Simple_repeat 2 28 0 1 1621 775 110 35 49 chr5 135836171 135836307 -16700952 - B1_Mus1 SINE Alu -5 143 8 1 1621 301 265 31 86 chr5 135836202 135836330 -16700929 - MT2B LTR ERVL -337 264 144 1 1621 192 184 0 0 chr5 135836464 135836513 -16700746 + T-rich Low_complexity Low_complexity 1 49 0 1 1621 415 212 176 8 chr5 135836514 135836633 -16700626 - B1_Mur2 SINE Alu -7 142 4 1 1621 912 134 7 0 chr5 135836719 135836861 -16700398 + B1_Mur4 SINE Alu 7 149 -1 1 1621 35 0 0 0 chr5 135837482 135837517 -16699742 + AT_rich Low_complexity Low_complexity 1 35 0 1 1621 556 215 30 5 chr5 135837660 135837797 -16699462 - B3 SINE B2 -10 183 35 1 1621 1043 101 0 0 chr5 135837965 135838113 -16699146 + B1_Mus1 SINE Alu 1 148 0 1 1621 531 62 0 111 chr5 135838279 135838328 -16698931 - ORR1C2 LTR MaLR -2 382 337 1 1621 1127 101 20 41 chr5 135838328 135838524 -16698735 - B2_Mm2 SINE B2 -3 192 1 1 1621 531 95 40 112 chr5 135838524 135838589 -16698670 - ORR1C2 LTR MaLR -48 336 259 1 1621 863 157 7 0 chr5 135838714 135838854 -16698405 + B1_Mus2 SINE Alu 1 141 -6 1 1621 213 39 0 0 chr5 135838855 135838881 -16698378 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1 1621 320 206 104 52 chr5 135839124 135839201 -16698058 + ID4_ SINE ID 2 82 -1 1 1621 1635 16 0 0 chr5 135839212 135839401 -16697858 + B2_Mm1a SINE B2 1 189 -4 1 1621 1029 149 70 20 chr5 135840493 135840692 -16696567 - B3 SINE B2 -3 213 5 1 1621 759 222 155 48 chr5 135840723 135840905 -16696354 - B4 SINE B4 -12 280 83 1 1621 632 215 149 11 chr5 135840905 135841093 -16696166 - B3 SINE B2 0 216 3 1 1621 759 222 155 48 chr5 135841093 135841161 -16696098 - B4 SINE B4 -210 82 3 1 1621 444 263 35 49 chr5 135841262 135841406 -16695853 - MER5A DNA MER1_type -1 188 47 1 1621 288 271 19 68 chr5 135841451 135841554 -16695705 - ORR1D1 LTR MaLR 0 379 282 1 1621 315 263 48 9 chr5 135841633 135841742 -16695517 - ORR1D1 LTR MaLR -261 113 1 1 1621 871 70 0 8 chr5 135843728 135843857 -16693402 + L1_Mus1 LINE L1 6439 6566 -1 1 1621 247 302 75 53 chr5 135844061 135844288 -16692971 - RMER17C LTR ERVK -55 355 124 1 1621 272 227 107 0 chr5 135844537 135844612 -16692647 - ID_B1 SINE B4 -20 204 122 1 1621 822 127 0 0 chr5 135844618 135844744 -16692515 - B2_Mm2 SINE B2 -58 137 12 1 1621 325 317 9 19 chr5 135844743 135844849 -16692410 - ID_B1 SINE B4 -118 106 2 1 1621 322 192 0 0 chr5 135844856 135844908 -16692351 - ID SINE ID -148 76 25 1 1621 1173 130 22 0 chr5 135845037 135845253 -16692006 - ZP3AR Satellite Satellite -12 220 1 1 1621 212 177 37 37 chr5 135845308 135845334 -16691925 + A-rich Low_complexity Low_complexity 2 30 0 1 1621 856 67 80 22 chr5 135845334 135845471 -16691788 + B1_Mus2 SINE Alu 1 145 -2 1 1621 212 177 37 37 chr5 135845471 135845526 -16691733 + A-rich Low_complexity Low_complexity 31 83 0 1 1621 670 188 31 0 chr5 135845574 135845702 -16691557 - B1_Mur2 SINE Alu -15 134 3 1 1621 277 289 0 12 chr5 135846498 135846582 -16690677 - ID4 SINE ID 0 83 1 1 1621 539 247 8 49 chr5 135846598 135846752 -16690507 - ZP3AR Satellite Satellite -77 147 1 1 1621 846 155 49 0 chr5 135846778 135846920 -16690339 - B1_Mur4 SINE Alu -1 149 1 1 1621 335 257 0 0 chr5 135847725 135847799 -16689460 - B3A SINE B2 -123 75 2 1 1621 245 255 29 48 chr5 135847970 135848073 -16689186 + MT2B LTR ERVL 158 258 -343 1 1621 449 167 185 0 chr5 135847995 135848103 -16689156 + B1_Mus1 SINE Alu 19 146 -2 1 1621 1657 262 97 77 chr5 135848146 135848459 -16688800 + RCHARR1 DNA MER1_type 74 421 -553 1 1621 1559 47 0 0 chr5 135848459 135848652 -16688607 - B2_Mm1t SINE B2 0 193 1 1 1621 1657 262 97 77 chr5 135848652 135848710 -16688549 + RCHARR1 DNA MER1_type 422 476 -498 1 1621 186 43 0 0 chr5 135848710 135848733 -16688526 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 1 1621 1657 262 97 77 chr5 135848733 135848749 -16688510 + RCHARR1 DNA MER1_type 477 479 -495 1 1621 800 152 20 7 chr5 135848749 135848895 -16688364 + B1_Mus1 SINE Alu 1 148 0 1 1621 1657 262 97 77 chr5 135848895 135849101 -16688158 + RCHARR1 DNA MER1_type 480 681 -293 1 1621 298 297 44 31 chr5 135849119 135849279 -16687980 - RSINE1 SINE B4 -1 164 3 1 1621 341 322 92 22 chr5 135849401 135849585 -16687674 + B3A SINE B2 2 198 0 1 1621 756 198 21 16 chr5 135849612 135849784 -16687475 + B3 SINE B2 24 194 -4 1 1621 241 221 73 0 chr5 135850391 135850459 -16686800 - ID4_ SINE ID -10 73 1 1 1621 494 227 188 0 chr5 135850602 135850756 -16686503 + B3A SINE B2 1 183 -15 1 1621 419 203 134 45 chr5 135851587 135851721 -16685538 - B1F2 SINE Alu 0 149 4 1 1621 35 63 0 0 chr5 135852640 135852703 -16684556 + AT_rich Low_complexity Low_complexity 1 63 0 1 1621 533 174 281 36 chr5 135854186 135854353 -16682906 + B3 SINE B2 3 210 -6 1 1621 183 204 0 0 chr5 135854878 135854922 -16682337 + L2 LINE L2 588 631 -2788 1 1621 447 202 39 0 chr5 135854940 135855044 -16682215 - PB1D10 SINE Alu -7 110 3 1 1621 293 290 141 11 chr5 135855320 135855505 -16681754 - B4A SINE B4 -83 209 1 1 1621 327 281 29 19 chr5 135855893 135855998 -16681261 + PB1D10 SINE Alu 9 114 -3 1 1621 225 346 11 85 chr5 135856016 135856193 -16681066 + RSINE1 SINE B4 2 165 0 1 1621 592 217 123 0 chr5 135856338 135856476 -16680783 + B3 SINE B2 53 207 -9 1 1621 639 244 72 0 chr5 135856490 135856670 -16680589 - B3A SINE B2 -4 194 2 1 1621 310 307 11 0 chr5 135859314 135859402 -16677857 + PB1D7 SINE Alu 1 89 -31 1 1621 821 174 28 0 chr5 135860887 135861031 -16676228 + B1_Mur2 SINE Alu 2 149 0 1 1621 673 201 43 22 chr5 135861075 135861244 -16676015 + B3A SINE B2 1 181 -14 1 1621 327 233 68 0 chr5 135861245 135861318 -16675941 - B1_Mur2 SINE Alu 0 149 72 1 1621 1330 69 26 5 chr5 135861373 135861562 -16675697 + B2_Mm2 SINE B2 2 194 -1 1 1621 438 242 102 0 chr5 135861672 135861800 -16675459 + B1F1 SINE Alu 1 141 -8 1 1621 3552 38 20 0 chr5 135862010 135862456 -16674803 + L1Md_F3 LINE L1 6130 6584 0 1 1621 1111 210 67 133 chr5 135863598 135864004 -16673255 - RLTR30 LTR ERV1 0 379 1 1 1621 270 175 0 73 chr5 135864646 135864714 -16672545 + RSINE1 SINE B4 65 127 -38 1 1621 1116 88 0 0 chr5 135864823 135864970 -16672289 + B1_Mus1 SINE Alu 2 148 0 1 1621 1127 35 21 0 chr5 135865121 135865265 -16671994 - B1_Mus2 SINE Alu 0 147 1 1 1621 324 319 34 8 chr5 135865275 135865392 -16671867 - B1F SINE Alu -8 141 22 1 1621 333 211 178 43 chr5 135865653 135865771 -16671488 + B1F SINE Alu 6 141 -8 1 1621 495 306 40 7 chr5 135866131 135866279 -16670980 + RSINE1 SINE B4 2 154 -11 1 1621 557 278 0 53 chr5 135866371 135866523 -16670736 + B3 SINE B2 16 159 -57 1 1621 201 163 0 0 chr5 135866618 135866667 -16670592 + A-rich Low_complexity Low_complexity 1 49 0 1 1621 270 167 0 0 chr5 135866688 135866730 -16670529 + L2b LINE L2 3325 3366 -9 1 1621 265 303 13 0 chr5 135866789 135866865 -16670394 + ID4 SINE ID 7 83 0 1 1621 215 311 16 0 chr5 135867192 135867253 -16670006 + PB1D10 SINE Alu 48 109 -8 1 1621 396 273 64 0 chr5 135867776 135867886 -16669373 + B1F SINE Alu 2 118 -31 1 1621 300 27 0 0 chr5 135868133 135868170 -16669089 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1621 1239 71 53 21 chr5 135868441 135868628 -16668631 - B2_Mm2 SINE B2 0 195 3 1 1621 523 222 85 8 chr5 135869247 135869365 -16667894 + ID_B1 SINE B4 86 212 -12 1 1621 491 230 101 78 chr5 135869398 135869615 -16667644 + ID_B1 SINE B4 3 224 0 1 1621 294 266 0 41 chr5 135869615 135869713 -16667546 + A-rich Low_complexity Low_complexity 2 95 0 1 1621 21 0 0 0 chr5 135870419 135870440 -16666819 + GC_rich Low_complexity Low_complexity 1 21 0 1 1621 304 316 36 26 chr5 135870490 135870551 -16666708 + ID_B1 SINE B4 31 224 0 1 1621 520 229 38 0 chr5 135870551 135870682 -16666577 + B1_Mur4 SINE Alu 15 150 0 1 1621 219 139 0 0 chr5 135870685 135870721 -16666538 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1621 471 218 0 0 chr5 135870795 135870896 -16666363 + ID_B1 SINE B4 76 176 -48 1 1621 561 190 4 52 chr5 135870811 135870952 -16666307 + PB1D10 SINE Alu 11 143 -6 1 1621 294 157 0 0 chr5 135870997 135871048 -16666211 + B1F1 SINE Alu 94 144 -5 1 1621 1114 57 0 0 chr5 135871181 135871322 -16665937 - B1_Mus1 SINE Alu -6 142 2 1 1621 681 184 36 14 chr5 135871324 135871462 -16665797 - B4A SINE B4 -45 247 107 1 1621 733 179 180 21 chr5 135871932 135872126 -16665133 - URR1B DNA MER1_type 0 225 1 1 1621 1145 95 0 18 chr5 135872212 135872383 -16664876 + B2_Mm2 SINE B2 2 169 -26 1 1621 879 251 155 51 chr5 135872625 135872819 -16664440 + MTD LTR MaLR 3 214 -205 1 1621 471 107 0 0 chr5 135872819 135872894 -16664365 + (TG)n Simple_repeat Simple_repeat 1 75 0 1 1621 879 251 155 51 chr5 135872894 135873073 -16664186 + MTD LTR MaLR 215 415 -4 1 1621 782 112 0 0 chr5 135873123 135873239 -16664020 + B2_Mm2 SINE B2 1 116 -79 1 1621 504 0 0 0 chr5 135873239 135873295 -16663964 + (TTTC)n Simple_repeat Simple_repeat 3 58 0 1 1621 1077 66 0 0 chr5 135873295 135873431 -16663828 - B1_Mus1 SINE Alu -12 136 1 1 1621 435 125 75 0 chr5 135873440 135873520 -16663739 - B2_Mm2 SINE B2 -1 194 109 1 1621 485 44 0 0 chr5 135873539 135873598 -16663661 + B1_Mur4 SINE Alu 83 141 -9 1 1621 185 0 40 0 chr5 135873598 135873623 -16663636 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1621 763 145 61 0 chr5 135873655 135873786 -16663473 + B1_Mus2 SINE Alu 9 147 0 1 1621 185 0 40 0 chr5 135873892 135873917 -16663342 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1621 321 211 10 87 chr5 135873980 135874084 -16663175 + RSINE1 SINE B4 66 161 -4 1 1621 696 215 27 14 chr5 135874095 135874241 -16663018 - B1_Mur2 SINE Alu 0 149 2 1 1621 713 249 25 10 chr5 135874481 135874680 -16662579 - B3 SINE B2 -10 206 5 1 1621 357 260 92 30 chr5 135874705 135874836 -16662423 - ID_B1 SINE B4 0 224 86 1 1621 337 295 29 58 chr5 135875397 135875534 -16661725 + B1F SINE Alu 10 142 -7 1 1621 464 242 8 62 chr5 135875412 135875540 -16661719 + ID_B1 SINE B4 103 223 -1 1 1621 229 83 0 0 chr5 135875540 135875576 -16661683 + L1M4c LINE L1 1647 1682 -4702 1 1621 272 303 101 0 chr5 135875672 135875761 -16661498 + RSINE1 SINE B4 47 144 -21 1 1621 225 0 0 0 chr5 135875769 135875794 -16661465 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1621 180 0 0 0 chr5 135875794 135875813 -16661446 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1621 636 161 33 53 chr5 135875857 135876008 -16661251 + B1_Mus1 SINE Alu 1 148 0 1 1621 215 125 25 0 chr5 135876020 135876060 -16661199 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1621 775 152 7 22 chr5 135876595 135876730 -16660529 - B1_Mus1 SINE Alu -3 145 13 1 1621 425 187 17 101 chr5 135876630 135876749 -16660510 - MT2B LTR ERVL -337 264 156 1 1621 225 0 0 0 chr5 135877008 135877033 -16660226 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1621 1210 47 0 0 chr5 135877033 135877181 -16660078 - B1_Mus1 SINE Alu 0 148 1 1 1621 826 218 43 29 chr5 135877190 135877398 -16659861 - B3 SINE B2 -5 211 1 1 1621 222 37 0 0 chr5 135877518 135877545 -16659714 + (TCC)n Simple_repeat Simple_repeat 3 29 0 1 1621 1096 58 0 7 chr5 135877578 135877717 -16659542 - B1_Mm SINE Alu -9 138 1 1 1621 1124 114 43 5 chr5 135877724 135877909 -16659350 - B2_Mm1t SINE B2 0 193 2 1 1621 1481 32 21 11 chr5 135877923 135878114 -16659145 - B2_Mm1a SINE B2 0 193 1 1 1621 1150 66 63 42 chr5 135878126 135878316 -16658943 - B2_Mm2 SINE B2 0 195 2 1 1621 1006 110 17 44 chr5 135878318 135878499 -16658760 - B2_Mm2 SINE B2 -19 176 1 1 1621 541 252 41 54 chr5 135878625 135878772 -16658487 - B3 SINE B2 -37 179 35 1 1621 1240 94 11 0 chr5 135878819 135879000 -16658259 - B2_Mm1t SINE B2 -9 184 2 1 1621 620 246 0 34 chr5 135879010 135879157 -16658102 - B1_Mur1 SINE Alu -6 143 2 1 1621 927 140 0 0 chr5 135879167 135879310 -16657949 - B1_Mur3 SINE Alu -5 144 2 1 1621 562 275 24 29 chr5 135879344 135879554 -16657705 - B3 SINE B2 -7 209 1 1 1621 484 233 83 0 chr5 135879657 135879777 -16657482 - B1_Mur4 SINE Alu -11 139 10 1 1621 456 206 29 19 chr5 135879800 135879904 -16657355 - PB1D10 SINE Alu -2 115 11 1 1621 367 245 0 11 chr5 135879824 135879919 -16657340 - ID_B1 SINE B4 -53 171 78 1 1621 514 253 112 6 chr5 135879956 135880135 -16657124 - B3A SINE B2 0 198 1 1 1621 394 244 143 24 chr5 135880143 135880269 -16656990 - ID_B1 SINE B4 0 224 84 1 1621 247 245 0 36 chr5 135880319 135880374 -16656885 - B1_Mus1 SINE Alu -93 55 3 1 1621 191 114 0 28 chr5 135880895 135880931 -16656328 + (TTCCC)n Simple_repeat Simple_repeat 1 35 0 1 1621 1358 64 27 0 chr5 135881187 135881374 -16655885 - B2_Mm1a SINE B2 0 193 2 1 1621 281 396 10 0 chr5 135881620 135881721 -16655538 - PB1D10 SINE Alu -11 106 5 1 1621 299 260 26 0 chr5 135881741 135881818 -16655441 - ID2 SINE ID -1 82 4 1 1621 493 283 37 37 chr5 135881859 135882050 -16655209 - B3A SINE B2 -7 191 1 1 1621 244 219 45 79 chr5 135882076 135882165 -16655094 + RLTR25B LTR ERVK 423 508 -520 1 1621 518 185 0 0 chr5 135882093 135882185 -16655074 + B1_Mus2 SINE Alu 41 132 -15 1 1621 319 328 66 0 chr5 135882194 135882316 -16654943 - B3 SINE B2 -8 208 79 1 1621 559 221 18 0 chr5 135883592 135883705 -16653554 - PB1D10 SINE Alu -1 116 2 1 1621 550 225 66 10 chr5 135883892 135884086 -16653173 - B3A SINE B2 -7 209 1 1 1621 529 269 7 0 chr5 135884594 135884735 -16652524 + B1_Mur1 SINE Alu 1 142 -7 1 1621 315 174 258 11 chr5 135884794 135884887 -16652372 - PB1D10 SINE Alu -1 116 1 1 1621 262 268 60 30 chr5 135887382 135887482 -16649777 - RSINE1 SINE B4 -19 146 44 1 1621 304 271 14 0 chr5 135887481 135887551 -16649708 - ZP3AR Satellite Satellite -117 95 25 1 1621 1581 32 0 0 chr5 135887601 135887789 -16649470 - B2_Mm1a SINE B2 -4 189 2 1 1621 274 333 0 0 chr5 135888003 135888084 -16649175 + (TG)n Simple_repeat Simple_repeat 2 82 0 1 1621 370 220 70 0 chr5 135888094 135888194 -16649065 + B3 SINE B2 12 118 -98 1 1621 233 327 10 0 chr5 135888231 135888250 -16649009 - PB1D10 SINE Alu -5 112 11 1 1621 304 293 0 0 chr5 135888250 135888332 -16648927 - ID_B1 SINE B4 -51 173 92 1 1621 233 200 0 0 chr5 135888754 135888809 -16648450 - ID4 SINE ID -28 55 1 1 1621 1573 50 1 10 chr5 135888770 135889211 -16648048 - ZP3AR Satellite Satellite -25 436 1 1 1621 214 325 96 9 chr5 135889232 135889347 -16647912 + MIRb SINE MIR 38 162 -106 1 1621 228 337 45 0 chr5 135889364 135889453 -16647806 - ZP3AR Satellite Satellite -78 134 42 1 1621 231 272 111 0 chr5 135889640 135889721 -16647538 - PB1D10 SINE Alu -6 111 22 1 1621 211 333 51 0 chr5 135889827 135889905 -16647354 - B3A SINE B2 -30 168 87 1 1621 405 214 11 5 chr5 135889938 135890036 -16647223 - B1F SINE Alu -21 96 2 1 1621 226 232 14 14 chr5 135889979 135890049 -16647210 - B4A SINE B4 -148 144 75 1 1621 360 260 41 0 chr5 135890310 135890433 -16646826 + ORR1E LTR MaLR 18 145 -214 1 1621 490 246 154 131 chr5 135890492 135890759 -16646500 - B4 SINE B4 -1 291 19 1 1621 229 246 49 0 chr5 135890761 135890822 -16646437 - RSINE1 SINE B4 -100 65 2 1 1621 475 267 13 45 chr5 135890826 135890983 -16646276 + MTEa LTR MaLR 32 183 -196 1 1621 416 224 0 247 chr5 135890990 135891075 -16646184 + B1F2 SINE Alu 20 87 -62 1 1621 1225 27 0 0 chr5 135891075 135891222 -16646037 + B1_Mus2 SINE Alu 1 147 0 1 1621 416 224 0 247 chr5 135891222 135891302 -16645957 + B1F2 SINE Alu 88 144 -5 1 1621 599 155 60 114 chr5 135891321 135891488 -16645771 + MTEa LTR MaLR 165 322 -57 1 1621 849 160 219 0 chr5 135891502 135891671 -16645588 - B3 SINE B2 -6 210 5 1 1621 479 244 118 7 chr5 135891700 135891836 -16645423 - RSINE1 SINE B4 -12 153 3 1 1621 642 135 29 0 chr5 135892176 135892280 -16644979 + PB1D9 SINE Alu 1 107 -13 1 1621 1081 72 7 0 chr5 135892293 135892432 -16644827 - B1_Mus2 SINE Alu -6 141 2 1 1621 1241 101 26 11 chr5 135892442 135892633 -16644626 - B2_Mm2 SINE B2 0 195 2 1 1621 282 73 0 0 chr5 135892663 135892704 -16644555 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1621 1113 62 7 0 chr5 135893480 135893625 -16643634 - B1_Mus2 SINE Alu 0 147 2 1 1621 585 109 22 0 chr5 135893631 135893723 -16643536 - B1_Mur1 SINE Alu -1 148 55 1 1621 4739 57 5 3 chr5 135893735 135894350 -16642909 + L1_Mus1 LINE L1 5951 6566 -1 1 1621 296 238 12 0 chr5 135894620 135894704 -16642555 + CT-rich Low_complexity Low_complexity 3 87 0 1 1621 448 124 825 0 chr5 135894709 135894823 -16642436 - B3 SINE B2 -3 213 6 1 1621 543 230 0 0 chr5 135894847 135894960 -16642299 - PB1D9 SINE Alu -5 115 3 1 1621 362 215 13 0 chr5 135894979 135895058 -16642201 - ID2 SINE ID -3 80 1 1 1621 1129 142 0 0 chr5 135895058 135895255 -16642004 - ZP3AR Satellite Satellite -11 201 5 1 1621 527 241 62 7 chr5 135895297 135895443 -16641816 - RSINE1 SINE B4 -10 155 2 1 1621 354 324 49 7 chr5 135895453 135895596 -16641663 - B1F SINE Alu 0 149 1 1 1621 771 70 18 0 chr5 135895741 135895855 -16641404 - B1_Mur4 SINE Alu 0 150 35 1 1621 1204 77 54 11 chr5 135896360 135896388 -16640871 - B2_Mm2 SINE B2 -1 194 159 1 1621 276 30 0 0 chr5 135896388 135896421 -16640838 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1 1621 1204 77 54 11 chr5 135896421 135896577 -16640682 - B2_Mm2 SINE B2 -37 158 3 1 1621 235 85 0 41 chr5 135896685 135896734 -16640525 + (TA)n Simple_repeat Simple_repeat 2 48 0 1 1621 1251 86 32 0 chr5 135896745 135896932 -16640327 + B2_Mm2 SINE B2 3 195 0 1 1621 403 257 83 37 chr5 135896938 135897047 -16640212 - PB1D9 SINE Alu -6 114 1 1 1621 750 139 0 37 chr5 135897082 135897216 -16640043 - B1_Mur4 SINE Alu 0 150 22 1 1621 456 285 68 59 chr5 135897219 135897439 -16639820 - B4 SINE B4 -63 229 8 1 1621 198 0 0 0 chr5 135897460 135897482 -16639777 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1621 613 179 59 15 chr5 135897523 135897659 -16639600 + B1_Mm SINE Alu 6 147 0 1 1621 450 246 26 0 chr5 135897782 135897896 -16639363 - PB1D7 SINE Alu -3 117 1 1 1621 853 167 0 14 chr5 135898129 135898275 -16638984 - B1_Mus1 SINE Alu 0 148 5 1 1621 634 239 101 11 chr5 135898306 135898484 -16638775 - B3 SINE B2 -20 196 3 1 1621 264 266 12 25 chr5 135898489 135898570 -16638689 - PB1D10 SINE Alu -3 114 35 1 1621 2440 143 128 41 chr5 135898607 135899168 -16638091 - RLTR18 LTR ERVK -4 612 3 1 1621 611 272 6 18 chr5 135899185 135899350 -16637909 - RSINE1 SINE B4 0 165 3 1 1621 26 0 0 0 chr5 135899556 135899582 -16637677 + AT_rich Low_complexity Low_complexity 1 26 0 1 1621 334 241 130 179 chr5 135899582 135899789 -16637470 - B3A SINE B2 0 198 2 1 1621 569 229 204 16 chr5 135899795 135899981 -16637278 - ID_B1 SINE B4 -2 222 2 1 1621 294 264 46 0 chr5 135899991 135900078 -16637181 - PB1D9 SINE Alu -8 112 22 1 1621 784 219 78 142 chr5 135901321 135901721 -16635538 + MTE2a LTR MaLR 2 375 -4 1 1621 374 103 12 150 chr5 135901886 135901966 -16635293 - B1_Mus1 SINE Alu -70 78 10 1 1621 239 250 18 0 chr5 135901918 135901974 -16635285 - B4A SINE B4 -150 142 86 1 1621 257 128 21 0 chr5 135901976 135902023 -16635236 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1621 243 264 0 0 chr5 135902030 135902083 -16635176 - ID_B1 SINE B4 -85 139 87 1 1621 2392 135 97 8 chr5 135902528 135903013 -16634246 + RLTR11A LTR ERVK 1 528 0 1 1621 379 301 66 5 chr5 135903077 135903274 -16633985 + RMER15 LTR ERVL 362 570 -5 1 1621 262 295 84 56 chr5 135903651 135903935 -16633324 + B4A SINE B4 1 292 0 1 1621 605 254 15 0 chr5 135903978 135904112 -16633147 + ID_B1 SINE B4 87 222 -2 1 1621 630 223 128 10 chr5 135904137 135904332 -16632927 + ID_B1 SINE B4 2 219 -5 1 1621 635 278 20 35 chr5 135904774 135904975 -16632284 - B3A SINE B2 0 198 1 1 1621 228 167 0 0 chr5 135905253 135905301 -16631958 + GA-rich Low_complexity Low_complexity 4 51 0 1 1621 721 245 138 0 chr5 135905348 135905544 -16631715 - ID_B1 SINE B4 0 224 2 1 1621 341 119 3 19 chr5 135905655 135905726 -16631533 - B1_Mur2 SINE Alu -2 148 56 1 1621 232 349 9 28 chr5 135905734 135905843 -16631416 + ORR1E LTR MaLR 97 203 -156 1 1621 1404 53 27 0 chr5 135906425 135906612 -16630647 + B2_Mm2 SINE B2 1 192 -3 1 1621 658 258 27 27 chr5 135906782 135907005 -16630254 - ID_B1 SINE B4 0 224 2 1 1621 667 147 115 8 chr5 135908245 135908375 -16628884 - B1_Mus1 SINE Alu -3 145 2 1 1621 331 271 48 32 chr5 135908381 135908507 -16628752 - B1_Mur3 SINE Alu -21 128 1 1 1621 597 230 171 39 chr5 135908507 135908585 -16628674 - ID_B1 SINE B4 -113 111 10 1 1621 354 107 0 0 chr5 135908801 135908857 -16628402 + (CACG)n Simple_repeat Simple_repeat 4 59 0 1 1621 535 230 0 10 chr5 135909220 135909346 -16627913 - B1F SINE Alu -14 136 16 1 1621 233 171 0 0 chr5 135909367 135909408 -16627851 - PB1D9 SINE Alu -7 113 73 1 1621 189 0 0 0 chr5 135909448 135909469 -16627790 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1621 231 250 77 0 chr5 135909478 135909530 -16627729 - ID_B1 SINE B4 -87 137 82 1 1621 990 40 0 0 chr5 135909617 135909743 -16627516 - B2_Mm2 SINE B2 -61 134 9 1 1621 305 62 21 0 chr5 135909744 135909792 -16627467 + (GAAA)n Simple_repeat Simple_repeat 1 49 0 1 1621 571 254 110 13 chr5 135909815 135910007 -16627252 + B3A SINE B2 1 201 -15 1 1621 343 111 222 0 chr5 135910297 135910369 -16626890 - ID_B1 SINE B4 0 224 137 1 1621 220 232 189 108 chr5 135910369 135910408 -16626851 - PB1D9 SINE Alu 0 120 1 1 1621 401 276 41 0 chr5 135910449 135910547 -16626712 - PB1D10 SINE Alu -4 113 12 1 1621 222 269 29 15 chr5 135911251 135911319 -16625940 - ID4 SINE ID -14 69 1 1 1621 1463 258 34 19 chr5 135911284 135911849 -16625410 - ZP3AR Satellite Satellite -29 573 1 1 1621 955 122 7 0 chr5 135912039 135912186 -16625073 - B1_Mur3 SINE Alu 0 149 2 1 1621 355 356 68 0 chr5 135912562 135912694 -16624565 - ID_B1 SINE B4 -83 141 1 1 1621 504 294 29 0 chr5 135912732 135912868 -16624391 + MER2 DNA MER2_type 1 140 -205 1 1621 530 266 49 0 chr5 135912879 135913022 -16624237 + RSINE1 SINE B4 2 151 -14 1 1621 627 234 126 0 chr5 135913308 135913483 -16623776 - B3A SINE B2 0 198 2 1 1621 210 224 88 15 chr5 135913490 135913558 -16623701 - ID4 SINE ID -3 80 8 1 1621 266 281 73 0 chr5 135913598 135913680 -16623579 + RSINE1 SINE B4 16 103 -62 1 1621 481 219 31 0 chr5 135913779 135913875 -16623384 + B3A SINE B2 5 103 -95 1 1621 280 300 0 0 chr5 135913932 135914002 -16623257 + B4A SINE B4 217 286 -6 1 1621 246 256 0 0 chr5 135914010 135914088 -16623171 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 1621 564 221 0 0 chr5 135914164 135914318 -16622941 + (CA)n Simple_repeat Simple_repeat 2 155 0 1 1621 674 207 8 16 chr5 135914636 135914759 -16622500 - B1_Mur1 SINE Alu -24 125 4 1 1621 23 0 0 0 chr5 135914788 135914811 -16622448 + AT_rich Low_complexity Low_complexity 1 23 0 1 1621 477 202 87 9 chr5 135914815 135914930 -16622329 - B3 SINE B2 -6 210 87 1 1621 1063 75 0 58 chr5 135914930 135915086 -16622173 + B1_Mus2 SINE Alu 1 147 0 1 1621 384 184 0 0 chr5 135915101 135915199 -16622060 + A-rich Low_complexity Low_complexity 1 98 0 1 1621 511 235 0 0 chr5 135915199 135915297 -16621962 - B3 SINE B2 -118 98 1 1 1621 311 252 114 68 chr5 135915297 135915429 -16621830 - ID_B1 SINE B4 -2 222 85 1 1621 416 333 0 0 chr5 135915583 135915679 -16621580 + G-rich Low_complexity Low_complexity 85 180 0 1 1621 345 259 0 0 chr5 135915705 135915786 -16621473 + PB1 SINE Alu 43 123 -4 1 1621 410 195 90 142 chr5 135916333 135916488 -16620771 + RSINE1 SINE B4 2 148 -17 1 1621 702 183 7 34 chr5 135916582 135916729 -16620530 - B1_Mus2 SINE Alu -2 145 3 1 1621 534 217 26 59 chr5 135916819 135916971 -16620288 + MTEb LTR MaLR 4 150 -229 1 1621 626 290 0 13 chr5 135916977 135917134 -16620125 + RSINE1 SINE B4 8 162 -3 1 1621 624 200 99 7 chr5 135917162 135917303 -16619956 + MTEb LTR MaLR 210 363 -16 1 1621 599 165 0 44 chr5 135917717 135917831 -16619428 - B1_Mur1 SINE Alu 0 149 41 1 1621 237 286 23 45 chr5 135917760 135917848 -16619411 - MT2B LTR ERVL -336 265 180 1 1621 563 142 0 9 chr5 135917850 135917957 -16619302 + (CTATT)n Simple_repeat Simple_repeat 3 108 0 1 1621 286 213 16 0 chr5 135918005 135918066 -16619193 - ID SINE ID -162 62 1 1 1621 1205 209 74 79 chr5 135918786 135919166 -16618093 + MTE2a LTR MaLR 2 379 0 1 1621 995 293 47 26 chr5 135919201 135919535 -16617724 + L1MA4 LINE L1 5489 5825 -475 1 1621 658 234 31 6 chr5 135919535 135919694 -16617565 + RSINE1 SINE B4 1 163 -2 1 1621 995 314 44 27 chr5 135919694 135919817 -16617442 + L1MA4 LINE L1 5789 5921 -379 1 1621 598 197 126 0 chr5 135920003 135920130 -16617129 - B1_Mur4 SINE Alu -1 149 7 1 1621 271 298 126 113 chr5 135920008 135920167 -16617092 - B4 SINE B4 -72 220 60 1 1621 359 85 51 0 chr5 135920169 135920228 -16617031 - ORR1A2 LTR MaLR -265 62 1 1 1621 202 224 20 0 chr5 135920228 135920277 -16616982 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1621 944 220 72 0 chr5 135920324 135920547 -16616712 - B4A SINE B4 -30 262 24 1 1621 498 212 5 17 chr5 135921144 135921263 -16615996 - PB1D10 SINE Alu 0 117 1 1 1621 239 333 12 0 chr5 135921351 135921435 -16615824 - PB1 SINE Alu -36 91 7 1 1621 354 284 68 82 chr5 135921440 135921455 -16615804 - ID_B1 SINE B4 -1 223 139 1 1621 453 260 81 0 chr5 135921455 135921578 -16615681 - B1F1 SINE Alu -10 139 7 1 202 657 147 30 44 chr5 135921653 135921788 -16615471 + B1_Mm SINE Alu 2 134 -13 1 1622 543 233 93 28 chr5 135921979 135922195 -16615064 + L1MC3 LINE L1 7400 7629 -156 1 1622 1209 116 11 20 chr5 135922206 135922506 -16614753 + ZP3AR Satellite Satellite 1 297 0 1 1622 414 266 63 28 chr5 135922594 135922737 -16614522 + B1F SINE Alu 2 149 0 1 1622 931 251 10 0 chr5 135922816 135923019 -16614240 - B3 SINE B2 -10 206 2 1 1622 351 270 81 57 chr5 135923031 135923202 -16614057 - ID_B1 SINE B4 -47 177 16 1 1622 511 305 26 32 chr5 135923403 135923559 -16613700 + RSINE1 SINE B4 9 163 -2 1 1622 278 87 22 0 chr5 135923662 135923708 -16613551 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1622 228 336 33 47 chr5 135923717 135923867 -16613392 - B1F1 SINE Alu 0 149 2 1 1622 322 246 0 0 chr5 135923985 135924046 -16613213 + ZP3AR Satellite Satellite 37 97 -115 1 1622 617 258 33 0 chr5 135924173 135924324 -16612935 - RSINE1 SINE B4 -2 163 8 1 1622 578 278 21 73 chr5 135924511 135924744 -16612515 - ID_B1 SINE B4 -3 221 1 1 1622 1507 101 45 3 chr5 135924744 135925158 -16612101 - ZP3AR Satellite Satellite -11 431 1 1 1622 795 96 89 0 chr5 135925762 135925897 -16611362 + B1_Mur3 SINE Alu 3 149 0 1 1622 398 276 86 0 chr5 135925952 135926068 -16611191 - ID_B1 SINE B4 -87 137 12 1 1622 385 285 155 43 chr5 135926650 135926837 -16610422 - ID_B1 SINE B4 -15 209 2 1 1622 253 200 0 39 chr5 135927070 135927122 -16610137 + PB1D9 SINE Alu 13 62 -58 1 1622 333 289 11 0 chr5 135927232 135927322 -16609937 + B1F1 SINE Alu 1 91 -58 1 1622 214 360 0 0 chr5 135927567 135927642 -16609617 - ID4_ SINE ID -8 75 1 1 1622 1443 57 0 0 chr5 135927622 135927908 -16609351 - ZP3AR Satellite Satellite -150 286 1 1 1622 1150 109 46 0 chr5 135928095 135928270 -16608989 + B2_Mm2 SINE B2 1 183 -12 1 1622 326 103 251 62 chr5 135928311 135928440 -16608819 + B2_Mm2 SINE B2 38 195 0 1 1622 223 26 50 25 chr5 135929327 135929367 -16607892 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 1 1622 762 266 58 10 chr5 135929368 135929573 -16607686 - ID_B1 SINE B4 -3 221 7 1 1622 217 94 0 0 chr5 135929572 135929604 -16607655 - PB1 SINE Alu -50 77 46 1 1622 848 156 0 28 chr5 135929750 135929895 -16607364 - B1_Mur4 SINE Alu -9 141 1 1 1622 677 265 66 5 chr5 135929917 135930114 -16607145 - B3 SINE B2 0 216 8 1 1622 749 265 11 8 chr5 135930194 135930388 -16606871 + B3 SINE B2 9 191 -25 1 1622 1142 68 0 0 chr5 135930388 135930534 -16606725 + B1_Mus2 SINE Alu 1 146 -1 1 1622 203 161 0 18 chr5 135930546 135930603 -16606656 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 1 1622 435 320 13 32 chr5 135931077 135931235 -16606024 + RSINE1 SINE B4 3 157 -8 1 1622 216 158 0 0 chr5 135931387 135931425 -16605834 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1622 666 200 126 0 chr5 135931897 135932072 -16605187 + B3A SINE B2 2 198 0 1 1622 326 250 87 0 chr5 135932091 135932183 -16605076 + PB1D7 SINE Alu 3 102 -18 1 1622 503 246 131 6 chr5 135932232 135932400 -16604859 + B4 SINE B4 45 233 -59 1 1622 476 255 36 111 chr5 135932378 135932407 -16604852 + B4 SINE B4 67 134 -158 1 1622 636 178 57 36 chr5 135932407 135932547 -16604712 + B1_Mur2 SINE Alu 6 148 -1 1 1622 476 255 36 111 chr5 135932547 135932603 -16604656 + B4 SINE B4 135 274 -18 1 1622 324 291 42 0 chr5 135932654 135932751 -16604508 + PB1D10 SINE Alu 12 118 -2 1 1622 304 304 0 0 chr5 135933113 135933182 -16604077 - RSINE1 SINE B4 -15 150 82 1 1622 521 251 67 57 chr5 135933652 135933846 -16603413 + B3A SINE B2 1 196 -2 1 1622 183 80 0 0 chr5 135934323 135934348 -16602911 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1622 506 194 146 35 chr5 135934364 135934508 -16602751 - RSINE1 SINE B4 -4 161 2 1 1622 361 260 187 75 chr5 135934516 135934703 -16602556 - ID_B1 SINE B4 -5 219 12 1 1622 380 240 57 9 chr5 135934707 135934812 -16602447 - PB1D7 SINE Alu 0 120 11 1 1622 811 127 27 27 chr5 135934940 135935086 -16602173 - B1_Mur4 SINE Alu -2 148 3 1 1622 352 261 46 116 chr5 135935086 135935108 -16602151 - B4 SINE B4 -63 224 69 1 1622 297 327 39 0 chr5 135935303 135935407 -16601852 + PB1D10 SINE Alu 2 109 -8 1 1622 679 211 134 22 chr5 135935435 135935614 -16601645 + B3 SINE B2 6 204 -12 1 1622 750 186 185 6 chr5 135935652 135935830 -16601429 + ID_B1 SINE B4 11 220 -4 1 1622 886 136 77 38 chr5 135935867 135936050 -16601209 + B2_Mm2 SINE B2 2 191 -4 1 1622 303 296 23 31 chr5 135936806 135936935 -16600324 + RSINE1 SINE B4 2 129 -36 1 1622 545 222 126 25 chr5 135937159 135937355 -16599904 - B3A SINE B2 -9 186 7 1 1622 1154 55 0 0 chr5 135937393 135937539 -16599720 + B1_Mus2 SINE Alu 2 147 0 1 1622 357 150 0 0 chr5 135937639 135937699 -16599560 - B1_Mur4 SINE Alu -88 62 3 1 1622 245 296 36 27 chr5 135937713 135937768 -16599491 - PB1D9 SINE Alu -7 113 56 1 1622 360 0 0 0 chr5 135937768 135937808 -16599451 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1622 245 296 36 27 chr5 135937808 135937863 -16599396 - PB1D9 SINE Alu -65 55 3 1 1622 882 247 5 16 chr5 135937950 135938143 -16599116 + B3 SINE B2 16 206 -10 1 1622 243 269 36 60 chr5 135938211 135938294 -16598965 - B1_Mur1 SINE Alu -34 115 35 1 1622 567 226 167 6 chr5 135938220 135938376 -16598883 - ID_B1 SINE B4 -35 189 9 1 1622 460 280 0 50 chr5 135938422 135938561 -16598698 + ID_B1 SINE B4 93 224 0 1 1622 636 283 11 39 chr5 135938968 135939226 -16598033 - MTEa LTR MaLR -56 323 3 1 1622 934 227 10 5 chr5 135939684 135939883 -16597376 - ID_B1 SINE B4 -24 200 1 1 1622 321 287 39 10 chr5 135939894 135939996 -16597263 - PB1D10 SINE Alu -8 109 5 1 1622 382 258 74 22 chr5 135940042 135940177 -16597082 + B1F1 SINE Alu 3 144 -5 1 1622 408 284 97 0 chr5 135940345 135940479 -16596780 + RSINE1 SINE B4 2 148 -17 1 1622 236 274 43 121 chr5 135940574 135940690 -16596569 - PB1D10 SINE Alu -8 109 3 1 1622 711 213 14 14 chr5 135940746 135940889 -16596370 + B1_Mur4 SINE Alu 1 143 -7 1 1622 733 241 94 77 chr5 135940925 135941212 -16596047 + B4A SINE B4 1 292 0 1 1622 315 263 17 17 chr5 135941227 135941347 -16595912 + (CA)n Simple_repeat Simple_repeat 1 120 0 1 1622 207 139 0 0 chr5 135941358 135941394 -16595865 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1622 1421 82 0 0 chr5 135942285 135942598 -16594661 + ZP3AR Satellite Satellite 1 313 -1 1 1622 932 186 122 0 chr5 135942676 135942864 -16594395 + B3 SINE B2 1 211 -5 1 1622 231 234 25 49 chr5 135942890 135942971 -16594288 + T-rich Low_complexity Low_complexity 5 83 0 1 1622 329 273 103 90 chr5 135943111 135943256 -16594003 - MTEa LTR MaLR -232 147 1 1 1622 844 273 90 63 chr5 135943346 135943696 -16593563 + ORR1E LTR MaLR 1 352 -22 1 1622 942 71 0 0 chr5 135943696 135943823 -16593436 + (TTC)n Simple_repeat Simple_repeat 3 129 0 1 1622 464 311 89 100 chr5 135943823 135943842 -16593417 + ORR1E LTR MaLR 353 370 -4 1 1622 584 309 41 37 chr5 135943900 135944145 -16593114 + ORR1E LTR MaLR 108 353 -6 1 1622 1547 57 7 0 chr5 135944593 135945779 -16591480 + ZP3AR Satellite Satellite 1 1194 0 1 1622 281 253 0 51 chr5 135945741 135945820 -16591439 + ID4 SINE ID 6 80 -3 1 1622 294 342 155 41 chr5 135946338 135946655 -16590604 + ORR1E LTR MaLR 1 353 -6 1 1622 360 0 0 0 chr5 135946818 135946858 -16590401 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1 1622 513 293 35 46 chr5 135946875 135947072 -16590187 - ID_B1 SINE B4 -25 199 5 1 1622 551 167 19 10 chr5 135947191 135947294 -16589965 + PB1D9 SINE Alu 5 108 -12 1 1622 286 42 20 20 chr5 135947322 135947371 -16589888 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 1 1622 1252 58 69 0 chr5 135947459 135947632 -16589627 - B2_Mm2 SINE B2 -9 186 2 1 1622 455 240 112 0 chr5 135948057 135948182 -16589077 - B1F SINE Alu 0 149 11 1 1622 236 309 181 8 chr5 135948081 135948208 -16589051 - B4 SINE B4 -77 215 67 1 1622 834 257 37 9 chr5 135948242 135948458 -16588801 - ID_B1 SINE B4 -2 222 1 1 1622 291 28 0 0 chr5 135948678 135948714 -16588545 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1622 610 274 99 43 chr5 135948723 135948956 -16588303 - B4A SINE B4 -44 248 3 1 1622 214 329 41 149 chr5 135948958 135949114 -16588145 - L2 LINE L2 -774 2645 2514 1 1622 306 353 23 0 chr5 135949114 135949247 -16588012 + B1F1 SINE Alu 5 140 -9 1 1622 214 329 41 149 chr5 135949247 135949358 -16587901 - L2 LINE L2 -906 2513 2407 1 1622 317 226 24 12 chr5 135949483 135949568 -16587691 + ZP3AR Satellite Satellite 2 87 -125 1 1622 1076 217 115 122 chr5 135949555 135949670 -16587589 + MTD LTR MaLR 5 96 -323 1 1622 1059 134 43 0 chr5 135949670 135949856 -16587403 + B2_Mm2 SINE B2 1 194 -1 1 1622 1076 217 115 122 chr5 135949856 135950150 -16587109 + MTD LTR MaLR 97 411 -8 1 1622 4466 219 71 48 chr5 135950154 135951374 -16585885 + MTD-int LTR MaLR 1 1248 -10 1 1622 1433 203 116 3 chr5 135951408 135951769 -16585490 + MTD LTR MaLR 18 419 0 1 1622 260 253 92 31 chr5 135951818 135951916 -16585343 + PB1D9 SINE Alu 1 104 -16 1 1622 338 195 12 38 chr5 135952525 135952605 -16584654 + B3 SINE B2 1 78 -138 1 1622 336 127 0 0 chr5 135952649 135952704 -16584555 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1 1622 276 236 0 0 chr5 135952800 135952855 -16584404 + ID4 SINE ID 19 73 -10 1 1622 289 310 114 9 chr5 135952896 135953010 -16584249 - MIRb SINE MIR -59 209 84 1 1622 260 105 0 0 chr5 135953010 135953048 -16584211 + MTEa LTR MaLR 1 38 -341 1 1622 22 35 0 0 chr5 135953048 135953077 -16584182 + AT_rich Low_complexity Low_complexity 1 29 0 1 1622 531 218 33 60 chr5 135953096 135953247 -16584012 - B1_Mus1 SINE Alu -1 147 1 1 1622 438 20 0 0 chr5 135953250 135953301 -16583958 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1 1622 714 235 153 0 chr5 135953301 135953497 -16583762 - Lx6 LINE L1 -32 7428 7203 1 1622 1209 185 153 16 chr5 135953499 135953807 -16583452 + MTEa LTR MaLR 30 379 0 1 1622 844 243 166 51 chr5 135953909 135954087 -16583172 + MTD LTR MaLR 4 216 -203 1 1622 738 218 67 34 chr5 135954087 135954296 -16582963 + B3 SINE B2 1 216 0 1 1622 844 243 166 51 chr5 135954296 135954490 -16582769 + MTD LTR MaLR 217 419 0 1 1622 668 277 106 12 chr5 135954760 135955016 -16582243 + B4 SINE B4 1 280 -12 1 1622 217 279 209 0 chr5 135955559 135955645 -16581614 - PB1D9 SINE Alu -16 104 1 1 1622 456 258 23 31 chr5 135955645 135955728 -16581531 - ID SINE ID -141 83 2 1 1622 582 241 82 7 chr5 135955759 135955905 -16581354 + RSINE1 SINE B4 6 162 -3 1 1622 320 185 0 0 chr5 135956135 135956189 -16581070 - ID_B1 SINE B4 -6 218 165 1 1622 691 332 59 59 chr5 135956172 135956495 -16580764 + MLT1A0 LTR MaLR 42 364 -1 1 1622 29 28 0 0 chr5 135956580 135956616 -16580643 + AT_rich Low_complexity Low_complexity 1 36 0 1 1622 559 292 6 31 chr5 135956616 135956775 -16580484 - RSINE1 SINE B4 -8 157 3 1 1622 876 135 177 43 chr5 135956855 135957041 -16580218 - B3 SINE B2 -5 211 1 1 1622 320 309 13 86 chr5 135957076 135957228 -16580031 + B4A SINE B4 4 144 -148 1 1622 25 51 0 0 chr5 135957326 135957365 -16579894 + AT_rich Low_complexity Low_complexity 1 39 0 1 1622 285 146 0 0 chr5 135957419 135957467 -16579792 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1622 421 257 48 0 chr5 135957518 135957623 -16579636 + PB1D7 SINE Alu 1 110 -10 1 1622 491 214 17 26 chr5 135957865 135957980 -16579279 + ID_B1 SINE B4 111 224 0 1 1622 293 250 0 0 chr5 135957988 135958052 -16579207 + RSINE1 SINE B4 3 66 -99 1 1622 1289 150 18 0 chr5 135958096 135958316 -16578943 - URR1B DNA MER1_type 0 225 2 1 1622 202 49 23 47 chr5 135958373 135958403 -16578856 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 1 1622 1246 20 0 0 chr5 135958403 135958550 -16578709 - B1_Mm SINE Alu 0 147 1 1 1622 202 49 23 47 chr5 135958550 135958562 -16578697 + (TTTG)n Simple_repeat Simple_repeat 3 15 0 1 1622 662 207 44 0 chr5 135958574 135958709 -16578550 + B1_Mur1 SINE Alu 4 144 -5 1 1622 734 60 0 10 chr5 135958727 135958828 -16578431 + (GGAA)n Simple_repeat Simple_repeat 2 101 0 1 1622 411 98 0 0 chr5 135958836 135958897 -16578362 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1622 185 330 118 9 chr5 135958897 135959007 -16578252 + MIRc SINE MIR 53 174 -94 1 1622 405 256 0 11 chr5 135959483 135959574 -16577685 + ID_B1 SINE B4 86 175 -49 1 1622 388 291 0 71 chr5 135959574 135959605 -16577654 + PB1D10 SINE Alu 5 117 0 1 1622 1477 59 4 2 chr5 135959603 135959977 -16577282 + ZP3AR Satellite Satellite 1 374 0 1 1622 845 178 7 7 chr5 135960117 135960264 -16576995 - B1_Mur2 SINE Alu -2 147 1 1 1622 2626 128 12 2 chr5 135960290 135960697 -16576562 + MTC LTR MaLR 1 411 -10 1 1622 346 338 51 36 chr5 135960732 135960870 -16576389 + RSINE1 SINE B4 26 165 0 1 1622 527 43 0 14 chr5 135961557 135961628 -16575631 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1622 539 192 0 19 chr5 135961792 135961898 -16575361 - PB1D9 SINE Alu 0 120 17 1 1622 492 283 124 15 chr5 135961902 135962103 -16575156 - B4A SINE B4 -61 231 9 1 1622 386 240 48 9 chr5 135962117 135962222 -16575037 - B4 SINE B4 -85 207 99 1 1622 198 0 0 0 chr5 135962227 135962249 -16575010 + (CCCCCA)n Simple_repeat Simple_repeat 1 22 0 1 1622 536 340 0 64 chr5 135962515 135962688 -16574571 + RSINE1 SINE B4 4 165 0 1 1622 562 192 0 0 chr5 135962909 135963008 -16574251 - RSINE1 SINE B4 -46 119 21 1 1622 243 0 0 0 chr5 135963026 135963053 -16574206 + (CCA)n Simple_repeat Simple_repeat 1 27 0 1 1622 207 0 0 0 chr5 135963058 135963081 -16574178 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1622 590 239 50 25 chr5 135963129 135963288 -16573971 - RSINE1 SINE B4 0 165 3 1 1622 625 271 78 22 chr5 135963357 135963587 -16573672 - B4 SINE B4 -48 244 2 1 1622 222 160 0 0 chr5 135965139 135965189 -16572070 + G-rich Low_complexity Low_complexity 1 50 0 1 1622 387 141 0 0 chr5 135965436 135965500 -16571759 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1622 215 233 40 27 chr5 135966095 135966170 -16571089 - MIR3 SINE MIR -33 175 100 1 1622 455 270 49 67 chr5 135966372 135966443 -16570816 - B4 SINE B4 -17 275 61 1 1622 637 145 4 68 chr5 135966443 135966579 -16570680 - B1_Mur4 SINE Alu -17 130 1 1 1622 413 335 143 5 chr5 135966598 135966787 -16570472 - B4 SINE B4 -69 223 9 1 1622 827 231 63 26 chr5 135966812 135967003 -16570256 - B3 SINE B2 -17 199 2 1 1622 734 98 30 15 chr5 135967011 135967146 -16570113 + (TTTC)n Simple_repeat Simple_repeat 4 140 0 1 1622 613 213 15 46 chr5 135967146 135967300 -16569959 - B1_Mur1 SINE Alu 0 149 1 1 1622 230 258 0 61 chr5 135967300 135967358 -16569901 - ID_B1 SINE B4 -22 202 149 1 1622 231 305 37 37 chr5 135967582 135967691 -16569568 + PB1D10 SINE Alu 1 109 -40 1 1622 407 176 0 0 chr5 135967882 135967956 -16569303 - B1_Mur4 SINE Alu -60 90 17 1 1622 261 270 260 0 chr5 135967956 135967974 -16569285 - ID_B1 SINE B4 -20 171 79 1 1622 355 243 119 18 chr5 135968005 135968114 -16569145 - PB1D9 SINE Alu 0 120 1 1 1622 323 276 19 48 chr5 135968145 135968248 -16569011 - B1F1 SINE Alu -49 100 1 1 1622 273 340 41 0 chr5 135968248 135968310 -16568949 - B4A SINE B4 -207 85 20 1 1622 1758 145 54 68 chr5 135968319 135968763 -16568496 + RMER10A LTR ERVL 5 442 0 1 1622 507 33 0 0 chr5 135968880 135968941 -16568318 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1622 483 221 38 19 chr5 135968941 135969047 -16568212 - RSINE1 SINE B4 -56 109 2 1 1622 514 235 70 0 chr5 135969308 135969423 -16567836 + RSINE1 SINE B4 27 149 -16 1 1622 234 128 0 0 chr5 135969443 135969482 -16567777 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1 1622 1427 58 11 0 chr5 135969563 135969754 -16567505 - B2_Mm1t SINE B2 0 193 1 1 1622 1163 93 16 0 chr5 135970010 135970205 -16567054 + ZP3AR Satellite Satellite 1 198 0 1 1622 235 217 203 0 chr5 135970167 135970236 -16567023 + ID2 SINE ID 1 83 0 1 1622 562 126 0 59 chr5 135970754 135970855 -16566404 - B3 SINE B2 -121 95 1 1 1622 669 260 80 5 chr5 135970958 135971159 -16566100 + ID_B1 SINE B4 1 216 -8 1 1622 460 266 6 61 chr5 135971169 135971333 -16565926 + RSINE1 SINE B4 3 157 -8 1 1622 701 238 5 81 chr5 135971409 135971606 -16565653 + B3A SINE B2 8 189 -9 1 1622 410 231 16 57 chr5 135971619 135971743 -16565516 - PB1D9 SINE Alu -1 119 1 1 1622 945 101 58 0 chr5 135971758 135971897 -16565362 - B1_Mus1 SINE Alu 0 148 2 1 1622 653 149 0 2 chr5 135971911 135972020 -16565239 + B1_Mur4 SINE Alu 42 150 0 1 1622 227 231 0 25 chr5 135972023 135972066 -16565193 + polypurine Low_complexity Low_complexity 2 42 0 1 1622 1486 37 27 0 chr5 135972066 135972253 -16565006 + B2_Mm1t SINE B2 1 192 -1 1 1622 227 231 0 25 chr5 135972253 135972289 -16564970 + polypurine Low_complexity Low_complexity 43 78 0 1 1622 464 232 232 22 chr5 135972468 135972653 -16564606 - ID_B1 SINE B4 0 224 1 1 1622 208 125 62 0 chr5 135972653 135972696 -16564563 + CT-rich Low_complexity Low_complexity 8 53 0 1 1622 540 139 211 8 chr5 135972705 135972828 -16564431 - B1_Mur4 SINE Alu -1 149 2 1 1622 480 222 10 0 chr5 135972836 135972935 -16564324 - MTEa LTR MaLR -201 178 79 1 1622 232 48 0 45 chr5 135972945 135972989 -16564270 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1 1622 783 142 15 15 chr5 135972989 135973125 -16564134 - B1_Mur1 SINE Alu -12 137 2 1 1622 339 25 0 0 chr5 135973149 135973189 -16564070 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1622 508 286 8 0 chr5 135973230 135973356 -16563903 - RSINE1 SINE B4 -36 129 3 1 1622 701 268 18 23 chr5 135973786 135974004 -16563255 + ID_B1 SINE B4 2 218 -6 1 1622 683 283 34 30 chr5 135974006 135974239 -16563020 + B4A SINE B4 1 234 -58 1 1622 433 278 21 0 chr5 135974241 135974338 -16562921 + RSINE1 SINE B4 11 109 -56 1 1622 966 26 0 0 chr5 135974376 135974493 -16562766 + (CA)n Simple_repeat Simple_repeat 2 118 0 1 1622 485 196 0 30 chr5 135974493 135974588 -16562671 - B1_Mur2 SINE Alu -28 121 29 1 1622 1905 170 36 60 chr5 135975376 135975485 -16561774 + MTC LTR MaLR 11 104 -317 1 1622 1086 66 0 0 chr5 135975485 135975621 -16561638 - B1_Mm SINE Alu -9 138 3 1 1622 1905 170 36 60 chr5 135975621 135975924 -16561335 + MTC LTR MaLR 105 413 -8 1 1622 216 149 43 0 chr5 135975938 135975970 -16561289 + T-rich Low_complexity Low_complexity 18 51 0 1 1622 1227 27 0 0 chr5 135975970 135976117 -16561142 - B1_Mm SINE Alu 0 147 1 1 1622 216 149 43 0 chr5 135976117 135976131 -16561128 + T-rich Low_complexity Low_complexity 4 17 0 1 1622 351 266 85 0 chr5 135976144 135976238 -16561021 - PB1D9 SINE Alu -12 108 7 1 1622 342 0 0 0 chr5 135976603 135976641 -16560618 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1622 1362 82 0 4 chr5 135976660 135976877 -16560382 - ZP3AR Satellite Satellite -3 216 1 1 1622 215 235 0 0 chr5 135977608 135977659 -16559600 - PB1D10 SINE Alu -15 102 52 1 1622 431 238 19 0 chr5 135978137 135978242 -16559017 + PB1D9 SINE Alu 5 111 -9 1 1622 626 252 0 0 chr5 135978247 135978390 -16558869 + ID_B1 SINE B4 81 223 -1 1 1622 590 179 16 0 chr5 135978392 135978515 -16558744 + GA-rich Low_complexity Low_complexity 3 127 0 1 1622 967 246 5 0 chr5 135978648 135978859 -16558400 + B3 SINE B2 5 216 0 1 1622 209 312 62 0 chr5 135978891 135978971 -16558288 + MIR SINE MIR 118 202 -60 1 1622 645 271 30 40 chr5 135979072 135979272 -16557987 - B3A SINE B2 0 198 1 1 1622 340 264 0 33 chr5 135979284 135979374 -16557885 + B4 SINE B4 2 88 -204 1 1622 317 298 10 84 chr5 135979410 135979537 -16557722 + PB1 SINE Alu 1 124 -3 1 1622 955 145 201 0 chr5 135979542 135979721 -16557538 + B3 SINE B2 2 216 0 1 1622 203 161 0 0 chr5 135979977 135980008 -16557251 + polypyrimidine Low_complexity Low_complexity 5 35 0 1 1622 599 197 15 22 chr5 135980008 135980143 -16557116 - B1_Mur1 SINE Alu -15 134 1 1 1622 919 229 24 5 chr5 135980160 135980366 -16556893 - B3 SINE B2 -6 210 1 1 1622 385 234 53 0 chr5 135980367 135980461 -16556798 - B1_Mur2 SINE Alu -1 148 50 1 1622 330 348 62 55 chr5 135980493 135980767 -16556492 - Lx8 LINE L1 -1 7472 7197 1 1622 414 39 0 0 chr5 135980805 135980857 -16556402 + (TG)n Simple_repeat Simple_repeat 2 53 0 1 1622 214 250 18 0 chr5 135980859 135980915 -16556344 - ID4_ SINE ID -23 60 4 1 1622 340 195 292 0 chr5 135981183 135981296 -16555963 - RLTR18B LTR ERVK 0 512 367 1 1622 925 259 146 12 chr5 135982165 135982486 -16554773 - MTE2b LTR MaLR 0 379 16 1 1622 272 280 12 47 chr5 135982896 135982982 -16554277 - RSINE1 SINE B4 -3 162 80 1 1622 221 221 15 0 chr5 135983099 135983167 -16554092 + GA-rich Low_complexity Low_complexity 4 72 0 1 1622 671 211 16 0 chr5 135983250 135983378 -16553881 + RSINE1 SINE B4 1 130 -35 1 1622 366 227 57 0 chr5 135984054 135984142 -16553117 + RSINE1 SINE B4 3 95 -70 1 1622 206 32 32 0 chr5 135984160 135984191 -16553068 + (TA)n Simple_repeat Simple_repeat 2 33 0 1 1622 405 196 50 48 chr5 135984479 135984606 -16552653 + PB1D9 SINE Alu 2 148 -1 1 1622 837 230 58 19 chr5 135984635 135984725 -16552534 + ID_B1 SINE B4 1 90 -134 1 1622 360 0 0 0 chr5 135984725 135984765 -16552494 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1622 837 230 58 19 chr5 135984765 135984882 -16552377 + ID_B1 SINE B4 91 216 -8 1 1622 537 242 56 56 chr5 135984956 135985118 -16552141 - RSINE1 SINE B4 -1 164 3 1 1622 614 319 44 0 chr5 135985230 135985434 -16551825 - L1M4 LINE L1 -5573 969 757 1 1622 387 60 0 0 chr5 135985539 135985589 -16551670 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1622 270 56 0 0 chr5 135985618 135985654 -16551605 + (CTTG)n Simple_repeat Simple_repeat 2 37 0 1 1622 632 206 49 21 chr5 135985657 135985801 -16551458 - B1_Mur3 SINE Alu 0 149 2 1 1622 369 214 24 0 chr5 135985828 135985912 -16551347 + RSINE1 SINE B4 1 86 -79 1 1622 401 210 50 10 chr5 135986089 135986190 -16551069 - ID_B1 SINE B4 -42 182 78 1 1622 750 236 16 19 chr5 135986229 135986428 -16550831 + B3A SINE B2 2 205 -11 1 1622 234 0 0 0 chr5 135986428 135986454 -16550805 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 1 1622 581 265 52 33 chr5 135986454 135986465 -16550794 + B3 SINE B2 206 216 0 1 1622 1171 64 117 0 chr5 135986561 135986732 -16550527 - B2_Mm2 SINE B2 -1 194 4 1 1622 364 229 8 99 chr5 135986763 135986894 -16550365 - PB1D7 SINE Alu -1 119 1 1 1622 490 289 12 48 chr5 135987092 135987259 -16550000 - B3A SINE B2 -2 196 36 1 1622 293 192 0 0 chr5 135987286 135987338 -16549921 - ID SINE ID -171 53 2 1 1622 735 234 20 15 chr5 135987413 135987608 -16549651 - B3A SINE B2 -2 196 1 1 1622 404 147 255 0 chr5 135987695 135987797 -16549462 + B1_Mur2 SINE Alu 3 130 -19 1 1622 234 0 0 0 chr5 135987797 135987823 -16549436 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 1 1622 351 0 0 0 chr5 135988341 135988380 -16548879 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1622 1023 38 0 0 chr5 135988380 135988511 -16548748 + (CA)n Simple_repeat Simple_repeat 1 132 0 1 1622 242 206 0 16 chr5 135989513 135989577 -16547682 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1622 203 305 7 52 chr5 135989578 135989713 -16547546 + (CATA)n Simple_repeat Simple_repeat 4 132 0 1 1622 225 254 28 14 chr5 135989839 135989850 -16547409 + B4A SINE B4 73 84 -208 1 1622 382 301 0 10 chr5 135989850 135989985 -16547274 + B1F SINE Alu 1 132 -18 1 1622 595 154 181 31 chr5 135990027 135990154 -16547105 - B1_Mus1 SINE Alu -1 147 2 1 1622 791 254 16 0 chr5 135990177 135990362 -16546897 + B4A SINE B4 1 188 -104 1 1622 862 276 0 5 chr5 135990409 135990609 -16546650 + MTD LTR MaLR 15 213 -206 1 1622 683 208 108 10 chr5 135990609 135990803 -16546456 + B3 SINE B2 3 215 -1 1 1622 692 129 11 48 chr5 135990824 135991011 -16546248 + GA-rich Low_complexity Low_complexity 1 180 0 1 1622 213 182 0 0 chr5 135991011 135991044 -16546215 + G-rich Low_complexity Low_complexity 1 33 0 1 1622 865 200 104 5 chr5 135991050 135991251 -16546008 + MTD LTR MaLR 199 419 0 1 1622 1173 270 58 136 chr5 135991253 135991827 -16545432 + MTD-int LTR MaLR 3 531 -839 1 1622 464 189 46 28 chr5 135991866 135991975 -16545284 - B3A SINE B2 -87 111 1 1 1622 225 0 0 0 chr5 135992116 135992141 -16545118 + (ATTG)n Simple_repeat Simple_repeat 2 26 0 1 1622 307 252 115 18 chr5 135992148 135992292 -16544967 - RSINE1 SINE B4 -1 291 76 1 1622 633 264 25 20 chr5 135992359 135992556 -16544703 - B3A SINE B2 0 198 1 1 1622 431 285 65 7 chr5 135992647 135992785 -16544474 - ID_B1 SINE B4 -1 223 78 1 1622 904 224 0 30 chr5 135993086 135993284 -16543975 + B3A SINE B2 2 193 -5 1 1622 460 160 46 7 chr5 135993664 135993753 -16543506 + (TG)n Simple_repeat Simple_repeat 1 95 0 1 1622 3109 29 39 0 chr5 135993753 135994134 -16543125 - MTA_Mm LTR MaLR 0 396 1 1 1622 460 160 46 7 chr5 135994134 135994195 -16543064 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1622 180 0 0 0 chr5 135994218 135994238 -16543021 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1 1622 1158 62 0 0 chr5 135994243 135994389 -16542870 - B1_Mus1 SINE Alu -2 146 1 1 1622 486 193 61 54 chr5 135994419 135994567 -16542692 - B1_Mur1 SINE Alu 0 149 1 1 1622 486 245 0 9 chr5 135994642 135994749 -16542510 - PB1D10 SINE Alu -9 108 3 1 1622 24 32 0 0 chr5 135994929 135994960 -16542299 + AT_rich Low_complexity Low_complexity 1 31 0 1 1622 603 202 124 0 chr5 135994985 135995114 -16542145 - RSINE1 SINE B4 -19 146 2 1 1622 311 145 28 5 chr5 135995326 135995402 -16541857 + B1F SINE Alu 31 143 -6 1 1622 577 40 0 0 chr5 135995410 135995484 -16541775 + B2_Mm2 SINE B2 1 74 -121 1 1622 2069 115 22 13 chr5 135995485 135995846 -16541413 + RMER16 LTR ERVK 3 533 0 1 1622 409 196 34 43 chr5 135995846 135995957 -16541302 + B2_Mm2 SINE B2 86 195 0 1 1622 499 278 19 31 chr5 135995982 135996142 -16541117 + RSINE1 SINE B4 2 159 -6 1 1622 846 228 83 0 chr5 135996198 135996360 -16540899 + B3 SINE B2 2 171 -45 1 1622 192 77 0 0 chr5 135996360 135996386 -16540873 + (TATG)n Simple_repeat Simple_repeat 1 26 0 1 1622 846 228 83 0 chr5 135996386 135996416 -16540843 + B3 SINE B2 172 209 -7 1 1622 590 219 86 0 chr5 135996427 135996555 -16540704 - B1_Mur3 SINE Alu -10 139 1 1 1622 881 94 0 42 chr5 135996764 135996908 -16540351 + B1_Mus1 SINE Alu 2 139 -9 1 1622 486 0 0 0 chr5 135996908 135996962 -16540297 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 1 1622 397 291 63 0 chr5 135997031 135997158 -16540101 + B1F SINE Alu 9 143 -6 1 1622 603 102 0 0 chr5 135997171 135997259 -16540000 + (TTCTC)n Simple_repeat Simple_repeat 3 90 0 1 1622 695 165 128 0 chr5 135997262 135997395 -16539864 - B1_Mur4 SINE Alu 0 150 1 1 1622 534 195 0 0 chr5 135997415 135997575 -16539684 + (TG)n Simple_repeat Simple_repeat 1 160 0 1 1622 274 279 154 0 chr5 135997580 135997684 -16539575 - RSINE1 SINE B4 -1 164 45 1 1622 26 0 0 0 chr5 135998015 135998041 -16539218 + AT_rich Low_complexity Low_complexity 1 26 0 1 1622 254 329 40 0 chr5 135998890 135998966 -16538293 - ID4 SINE ID -4 79 1 1 1622 737 129 0 0 chr5 135998926 135999050 -16538209 - ZP3AR Satellite Satellite -77 135 12 1 1622 436 245 32 11 chr5 135999206 135999301 -16537958 + B1F1 SINE Alu 12 108 -41 1 1622 931 125 14 0 chr5 135999326 135999470 -16537789 + B1_Mus1 SINE Alu 2 147 -1 1 1622 1210 251 30 54 chr5 135999539 135999872 -16537387 + MTE2b LTR MaLR 1 325 -54 1 1622 425 151 136 23 chr5 135999906 135999994 -16537265 - B1_Mur2 SINE Alu -5 144 47 1 1622 364 194 0 0 chr5 136000040 136000102 -16537157 + MTEb LTR MaLR 311 372 -7 1 1622 197 333 57 45 chr5 136000177 136000265 -16536994 - L4 LINE RTE -1339 690 602 2 1622 543 66 0 0 chr5 136000472 136000548 -16536711 + (TC)n Simple_repeat Simple_repeat 2 77 0 3 1622 216 306 0 0 chr5 136000642 136000704 -16536555 + GA-rich Low_complexity Low_complexity 3 64 0 4 1622 481 191 64 37 chr5 136000832 136000941 -16536318 - PB1D10 SINE Alu -5 112 1 5 1622 316 194 9 19 chr5 136001584 136001689 -16535570 + (CTCA)n Simple_repeat Simple_repeat 1 104 0 6 1622 440 263 17 8 chr5 136002184 136002303 -16534956 + PB1D7 SINE Alu 1 120 0 7 1622 569 278 99 0 chr5 136002328 136002479 -16534780 + ID_B1 SINE B4 1 166 -58 8 1622 398 266 32 0 chr5 136002399 136002493 -16534766 + PB1D10 SINE Alu 5 101 -16 9 1622 310 325 23 16 chr5 136002863 136002991 -16534268 - L1MC4a LINE L1 -271 7611 7483 1 1622 339 192 40 12 chr5 136002992 136003241 -16534018 + (TG)n Simple_repeat Simple_repeat 1 256 0 1 1622 234 207 53 0 chr5 136003265 136003434 -16533825 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1622 381 287 50 0 chr5 136004214 136004315 -16532944 - RSINE1 SINE B4 -10 155 50 1 1622 818 129 14 0 chr5 136004382 136004521 -16532738 + (TTTC)n Simple_repeat Simple_repeat 2 142 0 1 1622 213 245 59 143 chr5 136004594 136004713 -16532546 - B4A SINE B4 -134 158 50 1 1622 275 173 108 24 chr5 136004718 136004801 -16532458 - B4A SINE B4 -200 92 3 1 1622 1025 172 16 11 chr5 136004811 136004993 -16532266 - B2_Mm2 SINE B2 -8 187 5 1 1622 297 267 76 22 chr5 136005013 136005105 -16532154 - PB1D10 SINE Alu 0 117 21 1 1622 311 292 218 41 chr5 136005111 136005354 -16531905 - MLT1E2 LTR MaLR -54 573 288 1 1622 468 0 0 0 chr5 136005596 136005648 -16531611 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1622 333 0 0 0 chr5 136005648 136005684 -16531575 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1622 227 375 0 0 chr5 136005684 136005756 -16531503 - ID4_ SINE ID -11 72 1 2 1622 531 224 9 9 chr5 136005757 136005865 -16531394 - ZP3AR Satellite Satellite -63 149 42 2 1622 514 311 46 7 chr5 136005970 136006122 -16531137 + RSINE1 SINE B4 1 158 -7 2 1622 914 197 0 0 chr5 136006278 136006420 -16530839 + RSINE1 SINE B4 3 144 -21 2 1622 553 220 8 48 chr5 136006430 136006554 -16530705 + B3A SINE B2 36 154 -44 2 1622 243 0 0 0 chr5 136006554 136006581 -16530678 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1622 357 221 66 127 chr5 136006581 136006623 -16530636 + B2_Mm1a SINE B2 150 192 -1 2 1622 525 96 0 31 chr5 136006637 136006734 -16530525 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 2 1622 310 267 70 0 chr5 136007585 136007671 -16529588 + PB1D10 SINE Alu 1 92 -25 2 1622 383 240 60 0 chr5 136007594 136007694 -16529565 + ID_B1 SINE B4 91 196 -28 3 1622 799 247 6 40 chr5 136007712 136007797 -16529462 + B4 SINE B4 2 80 -212 3 1622 332 271 71 45 chr5 136007797 136007909 -16529350 + PB1D9 SINE Alu 1 115 -5 3 1622 569 242 16 8 chr5 136007918 136008047 -16529212 + RSINE1 SINE B4 2 131 -34 3 1622 361 273 11 0 chr5 136008069 136008157 -16529102 - PB1 SINE Alu -26 101 13 3 1622 908 232 102 88 chr5 136008160 136008533 -16528726 - MTE2b LTR MaLR -1 378 1 3 1622 296 300 167 0 chr5 136008785 136008875 -16528384 + RSINE1 SINE B4 30 134 -31 3 1622 512 262 7 52 chr5 136008897 136009050 -16528209 + ID_B1 SINE B4 79 224 0 3 1622 234 263 118 0 chr5 136009097 136009173 -16528086 + MIRb SINE MIR 88 172 -96 3 1622 911 227 0 0 chr5 136009880 136010043 -16527216 + RSINE1 SINE B4 3 165 0 3 1622 499 90 0 0 chr5 136010247 136010325 -16526934 + ZP3AR Satellite Satellite 47 124 -88 4 1622 261 0 0 0 chr5 136010547 136010576 -16526683 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1622 297 0 0 0 chr5 136010576 136010608 -16526651 + (GA)n Simple_repeat Simple_repeat 1 33 0 4 1622 968 275 27 68 chr5 136010620 136010916 -16526343 - B4 SINE B4 -6 286 3 4 1622 346 238 117 19 chr5 136010923 136011026 -16526233 - PB1 SINE Alu -1 126 14 4 1622 622 247 17 95 chr5 136011055 136011234 -16526025 - B3A SINE B2 -3 195 31 4 1622 1569 200 48 21 chr5 136011317 136011649 -16525610 + MTEa LTR MaLR 30 370 -9 4 1622 558 252 0 25 chr5 136011649 136011662 -16525597 - PB1 SINE Alu 0 127 116 4 1622 504 0 0 0 chr5 136011662 136011718 -16525541 + (TTTTA)n Simple_repeat Simple_repeat 2 57 0 4 1622 558 252 0 25 chr5 136011718 136011826 -16525433 - PB1 SINE Alu -12 115 9 4 1622 732 239 0 0 chr5 136012151 136012293 -16524966 - B1_Mur1 SINE Alu -7 142 1 4 1622 817 265 29 10 chr5 136012294 136012500 -16524759 - B3 SINE B2 -4 212 3 5 1622 756 238 36 16 chr5 136012503 136012695 -16524564 - B3A SINE B2 0 198 3 5 1622 309 268 0 40 chr5 136012699 136012773 -16524486 - ID_B1 SINE B4 -70 154 84 5 1622 376 208 51 13 chr5 136012773 136012851 -16524408 - ID4_ SINE ID -2 81 1 5 1622 830 177 0 0 chr5 136012906 136013036 -16524223 + B1_Mus2 SINE Alu 10 139 -8 5 1622 363 259 14 14 chr5 136013036 136013181 -16524078 + GA-rich Low_complexity Low_complexity 1 145 0 5 1622 995 227 54 137 chr5 136013572 136013944 -16523315 + MTEa LTR MaLR 4 344 -35 5 1622 331 226 0 97 chr5 136013896 136013989 -16523270 - ZP3AR Satellite Satellite -39 173 90 5 1622 261 294 108 0 chr5 136014247 136014349 -16522910 + PB1D9 SINE Alu 2 114 -6 5 1622 294 223 213 0 chr5 136014351 136014445 -16522814 + RSINE1 SINE B4 50 163 -2 5 1622 1137 82 0 0 chr5 136014869 136015027 -16522232 + (CA)n Simple_repeat Simple_repeat 2 159 0 6 1622 626 202 151 47 chr5 136015034 136015226 -16522033 + B4A SINE B4 3 214 -78 6 1622 25 31 0 0 chr5 136015269 136015301 -16521958 + AT_rich Low_complexity Low_complexity 1 32 0 6 1622 702 258 7 27 chr5 136015354 136015526 -16521733 + ID_B1 SINE B4 79 243 -49 6 1622 438 236 28 28 chr5 136015557 136015666 -16521593 + B1F SINE Alu 36 144 -5 6 1622 701 228 97 27 chr5 136015673 136015858 -16521401 - B3A SINE B2 0 198 1 6 1622 539 323 141 0 chr5 136015879 136016071 -16521188 + ID_B1 SINE B4 3 221 -3 6 1622 264 59 0 0 chr5 136016231 136016265 -16520994 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1622 703 276 84 84 chr5 136016308 136016581 -16520678 - B4 SINE B4 -19 273 1 6 1622 2103 82 48 19 chr5 136016937 136017247 -16520012 + ORR1A2 LTR MaLR 1 319 -8 6 1622 886 38 341 8 chr5 136017315 136017447 -16519812 - B2_Mm2 SINE B2 -19 176 1 7 1622 431 78 16 0 chr5 136017455 136017519 -16519740 + (TA)n Simple_repeat Simple_repeat 2 66 0 7 1622 573 217 407 5 chr5 136017548 136017673 -16519586 - B4A SINE B4 -5 287 91 7 1622 594 0 0 0 chr5 136017673 136017739 -16519520 + (TTTTG)n Simple_repeat Simple_repeat 2 67 0 7 1622 573 217 407 5 chr5 136017739 136017817 -16519442 - B4A SINE B4 -202 90 3 7 1622 275 250 133 44 chr5 136017819 136017932 -16519327 - MIRb SINE MIR -110 158 36 7 1622 987 241 19 0 chr5 136017947 136018163 -16519096 + ID_B1 SINE B4 2 221 -3 7 1622 376 225 87 38 chr5 136018197 136018352 -16518907 + MIR SINE MIR 36 188 -74 7 1622 189 0 0 0 chr5 136018456 136018477 -16518782 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 7 1622 430 191 83 21 chr5 136018503 136018599 -16518660 - B1F2 SINE Alu -10 139 38 7 1622 454 146 0 35 chr5 136018603 136018688 -16518571 + B1F SINE Alu 68 149 0 7 1622 670 154 50 25 chr5 136018742 136018862 -16518397 + B1_Mur4 SINE Alu 28 150 0 8 1622 243 0 0 0 chr5 136018927 136018954 -16518305 + (TC)n Simple_repeat Simple_repeat 1 27 0 8 1622 438 20 0 0 chr5 136018954 136019004 -16518255 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1622 279 0 0 0 chr5 136019143 136019174 -16518085 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1622 424 259 122 34 chr5 136019194 136019342 -16517917 - RSINE1 SINE B4 -1 164 4 8 1622 183 80 0 0 chr5 136019465 136019490 -16517769 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1622 389 293 30 0 chr5 136022080 136022179 -16515080 - ID_B1 SINE B4 -43 181 80 8 1622 417 259 114 40 chr5 136022208 136022357 -16514902 - RSINE1 SINE B4 0 165 6 8 1622 755 165 16 0 chr5 136022383 136022504 -16514755 + B1_Mur4 SINE Alu 1 123 -27 8 1622 402 241 33 0 chr5 136022527 136022618 -16514641 - B1F SINE Alu -13 104 14 8 1622 393 326 93 47 chr5 136022719 136022976 -16514283 - B4A SINE B4 -12 280 12 9 1622 2247 128 112 21 chr5 136023185 136023569 -16513690 - MTC LTR MaLR -2 419 1 9 1622 486 175 312 7 chr5 136023823 136023961 -16513298 - B3A SINE B2 -17 181 2 9 1622 624 75 67 109 chr5 136023963 136024082 -16513177 - B2_Mm2 SINE B2 -55 140 27 9 1622 288 0 0 0 chr5 136024082 136024114 -16513145 + (T)n Simple_repeat Simple_repeat 1 32 0 9 1622 305 276 0 13 chr5 136024114 136024191 -16513068 - B4 SINE B4 -69 223 148 9 1622 741 196 141 32 chr5 136024518 136024703 -16512556 + ID_B1 SINE B4 1 205 -19 9 1622 564 318 6 37 chr5 136024730 136024893 -16512366 + RSINE1 SINE B4 7 164 -1 9 1622 396 290 18 45 chr5 136024943 136025055 -16512204 + B3A SINE B2 57 165 -33 9 1622 186 189 0 0 chr5 136025309 136025346 -16511913 + T-rich Low_complexity Low_complexity 1 37 0 9 1622 322 260 68 104 chr5 136025888 136025920 -16511339 - MT2B LTR ERVL -277 324 203 1 1622 764 153 40 0 chr5 136025920 136026044 -16511215 - B1_Mur4 SINE Alu -9 141 13 1 1622 219 139 0 0 chr5 136026076 136026112 -16511147 + (AGGGGG)n Simple_repeat Simple_repeat 2 37 0 1 1622 270 245 92 41 chr5 136026178 136026276 -16510983 + B1F SINE Alu 47 149 0 1 1622 1577 53 16 0 chr5 136026283 136026595 -16510664 + ZP3AR Satellite Satellite 1 316 -1 1 1622 265 297 25 143 chr5 136026486 136026647 -16510612 + ID_B1 SINE B4 1 142 -82 1 1622 220 371 101 0 chr5 136026592 136026681 -16510578 + PB1D10 SINE Alu 6 103 -14 1 1622 551 85 0 12 chr5 136026706 136026789 -16510470 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 1 1622 574 273 38 0 chr5 136026793 136026925 -16510334 - B1F SINE Alu -7 142 6 1 1622 293 163 23 0 chr5 136027025 136027083 -16510176 - PB1D10 SINE Alu -15 105 42 1 1622 210 274 26 21 chr5 136027287 136027376 -16509883 + MIRm SINE MIR 112 201 -67 1 1622 478 298 98 62 chr5 136027389 136027664 -16509595 - MLT1A LTR MaLR 0 374 90 1 1622 249 115 151 19 chr5 136027664 136027717 -16509542 - MTEa LTR MaLR 0 379 320 1 1622 1769 224 84 32 chr5 136027725 136028199 -16509060 - RLTR11A2 LTR ERVK -28 499 1 1 1622 1074 203 246 95 chr5 136028203 136028261 -16508998 - MT2A LTR ERVL 0 533 491 1 1622 333 0 0 0 chr5 136028261 136028298 -16508961 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1622 1074 203 246 95 chr5 136028298 136028702 -16508557 - MT2A LTR ERVL -43 490 1 1 1622 297 256 203 23 chr5 136028702 136028829 -16508430 - MTEa LTR MaLR -56 323 159 1 1622 237 118 0 0 chr5 136028834 136028868 -16508391 - ID_B1 SINE B4 -8 216 183 1 1622 666 111 0 79 chr5 136028859 136028986 -16508273 - RLTR15 LTR ERVK -9 350 234 1 1622 3253 228 37 86 chr5 136029006 136030095 -16507164 - MYSERV16_I-int LTR ERVK -1115 1211 227 1 1622 236 54 0 51 chr5 136030099 136030138 -16507121 + (TCTCCC)n Simple_repeat Simple_repeat 1 37 0 1 1622 340 105 336 28 chr5 136030138 136030245 -16507014 - B2_Mm2 SINE B2 -9 186 47 1 1622 1293 91 11 17 chr5 136030292 136030471 -16506788 - B2_Mm1t SINE B2 -15 178 1 1 1622 850 286 47 14 chr5 136030472 136030749 -16506510 - MYSERV16_I-int LTR ERVK -2070 4480 4195 1 1622 614 228 24 16 chr5 136030849 136030974 -16506285 - B1_Mur3 SINE Alu -6 143 18 1 1622 238 258 0 147 chr5 136030885 136030994 -16506265 - RLTR25A LTR ERVK -525 578 486 1 1622 1002 115 234 0 chr5 136031416 136031703 -16505556 - RLTR15 LTR ERVK -5 354 1 1 1622 356 242 103 21 chr5 136031703 136031800 -16505459 - ID_B1 SINE B4 -36 188 84 1 1622 497 202 18 35 chr5 136031812 136031925 -16505334 - PB1D9 SINE Alu -8 112 2 1 1622 321 200 52 62 chr5 136031927 136032023 -16505236 - MTEa LTR MaLR -200 179 85 1 1622 183 80 0 0 chr5 136032121 136032146 -16505113 + (TC)n Simple_repeat Simple_repeat 2 26 0 1 1622 333 0 0 0 chr5 136032164 136032201 -16505058 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1622 708 291 15 36 chr5 136032208 136032404 -16504855 - B4A SINE B4 -28 264 73 1 1622 531 288 99 61 chr5 136032409 136032578 -16504681 + B4A SINE B4 104 279 -13 1 1622 297 0 0 0 chr5 136032578 136032611 -16504648 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1622 531 288 99 61 chr5 136032611 136032622 -16504637 + B4A SINE B4 280 290 -2 1 1622 639 276 36 32 chr5 136032627 136032848 -16504411 + ID_B1 SINE B4 2 223 -1 1 1622 195 42 0 0 chr5 136032852 136032876 -16504383 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 1 1622 755 169 42 0 chr5 136033313 136033431 -16503828 - ID_B1 SINE B4 -18 206 84 1 1622 293 229 15 161 chr5 136033323 136033453 -16503806 + YREP_Mm Unknown Unknown 208 318 -1494 1 1622 435 240 48 0 chr5 136033564 136033668 -16503591 - MTE2a LTR MaLR -2 377 269 1 1622 437 228 117 102 chr5 136033784 136034067 -16503192 - RMER10A LTR ERVL -34 408 122 1 1622 314 302 58 8 chr5 136034487 136034607 -16502652 - Lx8 LINE L1 -929 6544 6419 1 1622 641 274 79 0 chr5 136034618 136034782 -16502477 - B3A SINE B2 -6 192 16 1 1622 389 101 34 0 chr5 136034982 136035049 -16502210 + RLTR11A LTR ERVK 1 69 -458 1 1622 1446 118 38 14 chr5 136035053 136035367 -16501892 + RLTR11A LTR ERVK 229 528 0 1 1622 373 264 155 135 chr5 136035388 136035452 -16501807 - ID_B1 SINE B4 -23 201 155 1 1622 513 212 261 34 chr5 136035452 136035628 -16501631 - B3 SINE B2 0 216 1 1 1622 373 264 155 135 chr5 136035628 136035756 -16501503 - ID_B1 SINE B4 -70 154 5 1 1622 185 0 0 39 chr5 136035766 136035792 -16501467 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 1 1622 423 231 110 0 chr5 136035807 136035898 -16501361 - ID_B1 SINE B4 -9 215 115 1 1622 234 266 76 0 chr5 136035905 136035984 -16501275 + LTR16C LTR ERVL 344 428 -61 1 1622 263 227 92 13 chr5 136035998 136036074 -16501185 + RMER4B LTR ERVK 493 574 -11 1 1622 258 233 206 0 chr5 136036089 136036162 -16501097 - RSINE1 SINE B4 -75 90 3 1 1622 1646 31 5 0 chr5 136036756 136037158 -16500101 + ZP3AR Satellite Satellite 1 404 0 1 1622 349 282 13 0 chr5 136037158 136037236 -16500023 + ID4 SINE ID 1 79 -4 1 1622 1125 75 7 0 chr5 136037366 136037377 -16499882 - B1_Mus1 SINE Alu 0 148 138 1 1622 447 35 0 0 chr5 136037377 136037434 -16499825 + (TTTTG)n Simple_repeat Simple_repeat 4 60 0 1 1622 1125 75 7 0 chr5 136037434 136037569 -16499690 - B1_Mus1 SINE Alu -11 137 2 1 1622 569 281 8 15 chr5 136037752 136037882 -16499377 - RSINE1 SINE B4 -29 136 8 1 1622 418 297 9 0 chr5 136037907 136038018 -16499241 - PB1D10 SINE Alu -5 112 1 1 1622 192 40 0 0 chr5 136038023 136038048 -16499211 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1 1622 713 182 45 0 chr5 136038051 136038183 -16499076 - B1_Mus1 SINE Alu -10 138 1 1 1622 899 261 85 72 chr5 136038299 136038642 -16498617 + MTD LTR MaLR 1 330 -89 1 1622 1207 228 159 17 chr5 136038628 136038980 -16498279 + MTD LTR MaLR 18 419 0 1 1622 258 56 0 0 chr5 136039472 136039508 -16497751 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1622 335 149 0 0 chr5 136039570 136039617 -16497642 - B1_Mur4 SINE Alu -103 47 1 1 1622 764 245 63 24 chr5 136039648 136039853 -16497406 - MTEb LTR MaLR -8 371 159 1 1622 417 276 110 17 chr5 136039837 136039955 -16497304 - ZP3AR Satellite Satellite -34 178 50 1 1622 648 263 19 26 chr5 136040013 136040037 -16497222 - RSINE1 SINE B4 -5 160 137 1 1622 306 0 0 0 chr5 136040037 136040071 -16497188 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1622 648 263 19 26 chr5 136040071 136040202 -16497057 - RSINE1 SINE B4 -29 136 6 1 1622 275 291 81 0 chr5 136040222 136040308 -16496951 - B1F1 SINE Alu -43 106 14 1 1622 279 364 0 20 chr5 136040813 136040914 -16496345 + MLT1A LTR MaLR 1 99 -275 1 1622 799 232 0 0 chr5 136040918 136041060 -16496199 - B1_Mur1 SINE Alu -7 142 1 1 1622 733 256 23 6 chr5 136041066 136041239 -16496020 - B3A SINE B2 0 198 23 1 1622 5097 132 32 20 chr5 136041239 136042071 -16495188 + RMER21B LTR ERV1 1 842 0 1 1622 347 375 6 42 chr5 136042078 136042245 -16495014 - MTEb LTR MaLR -165 194 34 1 1622 766 235 93 22 chr5 136042427 136042610 -16494649 + B3A SINE B2 1 196 -2 1 1622 1162 75 0 14 chr5 136042655 136042803 -16494456 - B1_Mus2 SINE Alu -1 146 1 1 1622 557 220 76 28 chr5 136042858 136042986 -16494273 - B3 SINE B2 -1 215 81 1 1622 1824 136 86 0 chr5 136042986 136043287 -16493972 + IAPEY3_LTR LTR ERVK 1 327 -5 1 1622 481 234 28 0 chr5 136043273 136043380 -16493879 - B3 SINE B2 -104 112 3 1 1622 1069 149 84 28 chr5 136043898 136044044 -16493215 - MTC LTR MaLR 0 421 279 1 1622 2936 118 12 7 chr5 136044044 136044472 -16492787 + RLTR23 LTR ERV1 1 430 0 1 1622 1069 149 84 28 chr5 136044472 136044539 -16492720 - MTC LTR MaLR -143 278 196 1 1622 713 193 222 0 chr5 136044551 136044727 -16492532 - B3 SINE B2 0 216 2 1 1622 422 214 41 79 chr5 136044727 136044926 -16492333 - L1_Mur3 LINE L1 -819 5478 5214 1 1622 1180 82 0 0 chr5 136044930 136045076 -16492183 - B1_Mus2 SINE Alu -1 146 1 1 1622 288 0 0 0 chr5 136045327 136045359 -16491900 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1622 385 337 48 34 chr5 136045391 136045600 -16491659 - B4A SINE B4 -12 280 69 1 1622 1306 169 55 31 chr5 136045630 136045902 -16491357 - ORR1B2 LTR MaLR 0 379 134 1 1622 760 218 4 113 chr5 136045902 136046140 -16491119 - ID_B1 SINE B4 -9 215 4 1 1622 759 286 62 10 chr5 136047139 136047333 -16489926 + B4 SINE B4 5 208 -84 1 1622 385 192 115 0 chr5 136047334 136047412 -16489847 + RSINE1 SINE B4 11 97 -68 1 1622 252 0 0 0 chr5 136047451 136047479 -16489780 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1622 320 312 0 0 chr5 136047965 136048045 -16489214 - ID4_ SINE ID -3 80 1 1 1622 542 223 32 40 chr5 136048184 136048310 -16488949 - ID_B1 SINE B4 -98 126 2 1 1622 279 320 30 0 chr5 136049162 136049262 -16487997 + MIRb SINE MIR 67 169 -99 1 1622 817 156 12 0 chr5 136049305 136049472 -16487787 + (TCCA)n Simple_repeat Simple_repeat 4 172 0 1 1622 384 59 0 0 chr5 136049485 136049536 -16487723 + (CATA)n Simple_repeat Simple_repeat 1 51 0 1 1622 480 263 0 0 chr5 136049551 136049730 -16487529 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 1 1622 189 213 0 0 chr5 136050102 136050149 -16487110 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 1 1622 740 247 161 0 chr5 136050476 136050662 -16486597 - ID_B1 SINE B4 -4 220 5 1 1622 378 0 0 0 chr5 136050818 136050860 -16486399 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1622 401 292 0 0 chr5 136050860 136050949 -16486310 - B3A SINE B2 -109 89 1 1 1622 540 307 28 7 chr5 136050953 136051094 -16486165 - B4A SINE B4 -64 228 85 1 1622 591 104 0 0 chr5 136051095 136051201 -16486058 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 1 1622 409 317 20 66 chr5 136051232 136051384 -16485875 - RSINE1 SINE B4 -19 146 2 1 1622 203 225 14 0 chr5 136051738 136051809 -16485450 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1622 979 277 15 27 chr5 136051870 136052130 -16485129 - B4A SINE B4 -7 285 29 1 1622 376 278 71 0 chr5 136052324 136052450 -16484809 + B1F SINE Alu 5 139 -10 2 1622 191 204 19 0 chr5 136052499 136052553 -16484706 + G-rich Low_complexity Low_complexity 4 58 0 2 1623 244 175 70 0 chr5 136052954 136053011 -16484248 + T-rich Low_complexity Low_complexity 4 64 0 2 1623 228 67 0 0 chr5 136053075 136053105 -16484154 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 1623 251 286 0 0 chr5 136053106 136053162 -16484097 - RSINE1 SINE B4 -7 158 103 2 1623 211 182 0 0 chr5 136053157 136053190 -16484069 - B1F2 SINE Alu -116 33 1 2 1623 446 266 70 21 chr5 136053246 136053388 -16483871 + B1F1 SINE Alu 1 149 0 2 1623 1664 53 17 12 chr5 136053390 136053917 -16483342 + ZP3AR Satellite Satellite 1 529 0 2 1623 505 208 271 55 chr5 136054007 136054316 -16482943 - ORR1E LTR MaLR 0 379 1 2 1623 869 139 12 62 chr5 136054657 136054818 -16482441 + B3 SINE B2 8 160 -56 2 1623 349 320 92 70 chr5 136054818 136054842 -16482417 + B4A SINE B4 8 196 -96 2 1623 600 239 138 0 chr5 136054845 136055012 -16482247 - B3A SINE B2 -8 190 1 2 1623 314 271 11 23 chr5 136055569 136055656 -16481603 - MTEb LTR MaLR -44 335 250 2 1623 919 205 77 19 chr5 136055744 136055953 -16481306 + URR1B DNA MER1_type 1 221 -4 2 1623 225 0 0 0 chr5 136055963 136055988 -16481271 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 2 1623 264 185 35 69 chr5 136056103 136056161 -16481098 + MLT1A1 LTR MaLR 74 129 -279 2 1623 716 252 28 69 chr5 136056232 136056449 -16480810 + B4 SINE B4 81 288 -4 2 1623 414 260 121 38 chr5 136056637 136056769 -16480490 + B1F SINE Alu 7 149 0 2 1623 754 220 101 6 chr5 136056770 136056918 -16480341 + B3A SINE B2 2 166 -32 2 1623 429 20 0 0 chr5 136056918 136056968 -16480291 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 1623 754 220 101 6 chr5 136056968 136056997 -16480262 + B3A SINE B2 167 196 -2 2 1623 892 131 8 0 chr5 136057113 136057243 -16480016 + B1_Mur2 SINE Alu 5 135 -14 2 1623 197 73 0 89 chr5 136057546 136057591 -16479668 + T-rich Low_complexity Low_complexity 1 41 0 2 1623 816 157 50 7 chr5 136057591 136057732 -16479527 - B1_Mus2 SINE Alu 0 147 1 2 1623 294 29 0 0 chr5 136057750 136057785 -16479474 + (TTAG)n Simple_repeat Simple_repeat 4 38 0 2 1623 414 100 0 0 chr5 136057801 136057861 -16479398 + (TTCA)n Simple_repeat Simple_repeat 3 62 0 2 1623 464 244 219 0 chr5 136057889 136058012 -16479247 - RSINE1 SINE B4 -14 151 2 2 1623 610 274 153 32 chr5 136058294 136058667 -16478592 + L1MB8 LINE L1 5475 5892 -286 2 1623 1257 45 0 0 chr5 136058868 136059024 -16478235 + (TTTC)n Simple_repeat Simple_repeat 1 156 0 2 1623 539 271 0 168 chr5 136059056 136059127 -16478132 - RSINE1 SINE B4 -20 145 101 2 1623 668 169 93 22 chr5 136059127 136059141 -16478118 - B1_Mur2 SINE Alu 0 149 137 2 1623 324 0 0 0 chr5 136059141 136059177 -16478082 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2 1623 668 169 93 22 chr5 136059177 136059301 -16477958 - B1_Mur2 SINE Alu -13 136 1 2 1623 539 271 0 168 chr5 136059301 136059402 -16477857 - RSINE1 SINE B4 -65 100 2 2 1623 292 196 17 67 chr5 136059911 136059971 -16477288 - PB1D10 SINE Alu -54 73 17 2 1623 882 80 0 8 chr5 136060089 136060215 -16477044 + ZP3AR Satellite Satellite 48 172 -40 2 1623 246 246 135 14 chr5 136060191 136060265 -16476994 + ID4_ SINE ID 1 83 0 2 1623 341 200 87 22 chr5 136060411 136060503 -16476756 + PB1D7 SINE Alu 22 119 -1 2 1623 881 153 28 0 chr5 136060507 136060651 -16476608 + B1_Mur4 SINE Alu 1 148 -2 2 1623 321 255 43 154 chr5 136060678 136060840 -16476419 + ID_B1 SINE B4 81 224 0 2 1623 789 202 100 33 chr5 136060852 136061062 -16476197 + ID_B1 SINE B4 1 224 0 2 1623 1063 99 0 7 chr5 136061075 136061217 -16476042 + B1_Mur4 SINE Alu 1 141 -9 2 1623 258 32 0 0 chr5 136061312 136061343 -16475916 + (GA)n Simple_repeat Simple_repeat 1 31 0 2 1623 219 333 0 0 chr5 136061664 136061745 -16475514 + (CA)n Simple_repeat Simple_repeat 1 81 0 2 1623 200 328 0 0 chr5 136062440 136062498 -16474761 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 1623 3335 16 42 0 chr5 136062541 136062921 -16474338 + MTA_Mm LTR MaLR 1 396 0 2 1623 339 113 0 0 chr5 136062956 136063018 -16474241 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2 1623 746 234 0 0 chr5 136063052 136063197 -16474062 - RSINE1 SINE B4 -19 146 2 2 1623 256 276 9 87 chr5 136063211 136063326 -16473933 - PB1D9 SINE Alu 0 120 15 2 1623 687 280 52 62 chr5 136063230 136063424 -16473835 - B4 SINE B4 -100 192 1 2 1623 321 68 0 0 chr5 136063545 136063589 -16473670 + (TCC)n Simple_repeat Simple_repeat 1 44 0 2 1623 1168 137 33 0 chr5 136063589 136063772 -16473487 - B2_Mm2 SINE B2 -2 193 5 2 1623 1055 184 66 19 chr5 136063839 136064050 -16473209 + URR1B DNA MER1_type 1 221 -4 2 1623 195 69 0 0 chr5 136064064 136064093 -16473166 + (CAGA)n Simple_repeat Simple_repeat 2 30 0 2 1623 683 252 27 86 chr5 136064324 136064545 -16472714 + B4 SINE B4 81 288 -4 2 1623 419 260 122 30 chr5 136064733 136064864 -16472395 + B1F SINE Alu 7 149 0 2 1623 849 203 81 16 chr5 136064866 136065051 -16472208 + B3A SINE B2 2 198 0 2 1623 590 340 0 0 chr5 136065068 136065230 -16472029 - RSINE1 SINE B4 -2 163 2 2 1623 582 197 139 0 chr5 136065272 136065394 -16471865 - B1_Mus2 SINE Alu -6 141 3 2 1623 240 324 0 0 chr5 136065672 136065743 -16471516 + CT-rich Low_complexity Low_complexity 1 71 0 2 1623 426 257 9 9 chr5 136065745 136065851 -16471408 - PB1D10 SINE Alu -9 108 3 2 1623 2056 104 12 54 chr5 136066389 136066725 -16470534 + RLTRETN_Mm LTR ERVK 1 322 0 2 1623 465 289 0 0 chr5 136066725 136066839 -16470420 + ID_B1 SINE B4 111 224 0 2 1623 3480 115 160 21 chr5 136066857 136067173 -16470086 + RMER6C LTR ERVK 1 323 -367 2 1623 240 35 0 0 chr5 136067173 136067202 -16470057 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 1623 3480 115 160 21 chr5 136067202 136067491 -16469768 + RMER6C LTR ERVK 324 689 -1 2 1623 474 253 103 13 chr5 136067559 136067715 -16469544 - MER63B DNA AcHobo -2 434 265 2 1623 343 256 0 71 chr5 136067718 136067802 -16469457 - PB1D10 SINE Alu -37 80 3 2 1623 440 235 12 0 chr5 136067732 136067817 -16469442 - ID_B1 SINE B4 -71 153 68 2 1623 737 178 110 93 chr5 136067974 136068285 -16468974 - RMER6A LTR ERVK -1 719 486 2 1623 490 258 0 55 chr5 136068281 136068408 -16468851 + ORR1E LTR MaLR 72 191 -168 2 1623 243 321 0 87 chr5 136068409 136068501 -16468758 + B1F2 SINE Alu 3 86 -63 2 1623 207 91 30 0 chr5 136068528 136068561 -16468698 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 2 1623 689 235 6 0 chr5 136068561 136068740 -16468519 + GA-rich Low_complexity Low_complexity 1 180 0 2 1623 296 24 24 0 chr5 136068802 136068843 -16468416 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 1623 651 227 66 13 chr5 136068899 136069051 -16468208 + RSINE1 SINE B4 2 161 -4 2 1623 835 224 7 0 chr5 136069173 136069325 -16467934 + B3A SINE B2 1 153 -45 2 1623 405 0 0 0 chr5 136069329 136069374 -16467885 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1623 998 141 0 45 chr5 136069404 136069560 -16467699 - B1_Mur4 SINE Alu -1 149 1 2 1623 392 270 104 0 chr5 136069661 136069776 -16467483 + RSINE1 SINE B4 3 129 -36 2 1623 752 65 9 0 chr5 136069963 136070070 -16467189 + (TA)n Simple_repeat Simple_repeat 2 109 0 2 1623 715 186 93 0 chr5 136070078 136070207 -16467052 + B1_Mur4 SINE Alu 5 145 -5 2 1623 224 177 15 46 chr5 136070209 136070274 -16466985 + A-rich Low_complexity Low_complexity 4 66 0 2 1623 686 136 8 0 chr5 136070274 136070392 -16466867 + (GGGA)n Simple_repeat Simple_repeat 4 122 0 2 1623 393 298 147 57 chr5 136070618 136070889 -16466370 - B4A SINE B4 -18 274 9 2 1623 210 156 0 0 chr5 136070964 136071009 -16466250 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1623 198 0 0 0 chr5 136071051 136071073 -16466186 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2 1623 1012 129 0 0 chr5 136071073 136071213 -16466046 - B1_Mur4 SINE Alu -9 141 2 2 1623 234 150 0 0 chr5 136071243 136071283 -16465976 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 2 1623 606 283 56 126 chr5 136071283 136071679 -16465580 + RLTR9A LTR ERVK 1 368 0 2 1623 285 277 34 109 chr5 136071681 136071815 -16465444 + ETnERV2-int LTR ERVK 4 129 -3185 2 1623 2136 107 88 15 chr5 136071815 136072157 -16465102 - RLTR9A LTR ERVK -1 367 1 2 1623 285 277 34 109 chr5 136072157 136072261 -16464998 + ETnERV2-int LTR ERVK 130 224 -3090 2 1623 3462 309 63 57 chr5 136072295 136074594 -16462665 + ETnERV2-int LTR ERVK 328 2484 -3683 2 1623 256 33 0 0 chr5 136074597 136074627 -16462632 - RLTRETN_Mm LTR ERVK -179 143 114 2 1623 605 122 33 0 chr5 136074638 136074728 -16462531 - RLTRETN_Mm LTR ERVK -112 210 118 2 1623 10989 233 42 18 chr5 136074728 136077382 -16459877 + ETnERV2-int LTR ERVK 2512 5997 -1409 2 1623 197 33 33 0 chr5 136077382 136077412 -16459847 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1623 10989 203 30 7 chr5 136077412 136077615 -16459644 + ETnERV2-int LTR ERVK 5998 6203 -1203 2 1623 6326 30 6 0 chr5 136077750 136078478 -16458781 - L1_Mus1 LINE L1 0 6567 5836 2 1623 302 278 21 83 chr5 136078633 136078778 -16458481 + ETnERV2-int LTR ERVK 6377 6512 -30 2 1623 581 284 59 116 chr5 136078914 136079301 -16457958 + RLTR9A LTR ERVK 4 368 0 2 1623 519 95 0 0 chr5 136079302 136079376 -16457883 + (TC)n Simple_repeat Simple_repeat 2 75 0 2 1623 564 275 15 29 chr5 136079377 136079554 -16457705 - B4 SINE B4 -46 246 72 2 1623 597 173 93 50 chr5 136079554 136079694 -16457565 - B1_Mus2 SINE Alu -1 146 1 2 1623 780 199 131 48 chr5 136080158 136080364 -16456895 - ID_B1 SINE B4 -1 223 1 2 1623 207 0 0 0 chr5 136080845 136080868 -16456391 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1623 1621 28 0 0 chr5 136080883 136081062 -16456197 - B2_Mm1t SINE B2 -14 179 1 2 1623 702 168 84 0 chr5 136081073 136081204 -16456055 - B1_Mur2 SINE Alu -7 142 1 2 1623 481 282 27 86 chr5 136081261 136081293 -16455966 - B4A SINE B4 -46 246 222 2 1623 1119 129 0 0 chr5 136081293 136081471 -16455788 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2 1623 564 266 15 34 chr5 136081471 136081624 -16455635 - B4 SINE B4 -71 221 72 2 1623 610 193 93 36 chr5 136081624 136081764 -16455495 - B1_Mur2 SINE Alu -1 148 1 3 1623 780 199 131 48 chr5 136082228 136082434 -16454825 - ID_B1 SINE B4 -1 223 1 3 1623 207 0 0 0 chr5 136082915 136082938 -16454321 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1623 1607 34 0 0 chr5 136082953 136083132 -16454127 - B2_Mm1t SINE B2 -14 179 1 3 1623 702 168 84 0 chr5 136083143 136083274 -16453985 - B1_Mur2 SINE Alu -7 142 1 3 1623 929 153 12 0 chr5 136083317 136083487 -16453772 + CT-rich Low_complexity Low_complexity 1 172 0 3 1623 502 251 238 11 chr5 136083487 136083668 -16453591 - ID_B1 SINE B4 -1 223 2 3 1623 4538 159 48 75 chr5 136083673 136084684 -16452575 + RLTR13C1 LTR ERVK 1 983 0 3 1623 1011 106 7 0 chr5 136084737 136084878 -16452381 + B1_Mus1 SINE Alu 7 148 0 3 1623 708 240 117 0 chr5 136084899 136085070 -16452189 - B3 SINE B2 -2 214 24 3 1623 251 284 60 60 chr5 136085161 136085298 -16451961 - MER44B DNA MER2_type -141 409 273 3 1623 394 184 51 120 chr5 136085298 136085415 -16451844 + MTEa LTR MaLR 3 111 -268 3 1623 3663 79 10 83 chr5 136085376 136086031 -16451228 - RMER17D LTR ERVK -316 573 1 3 1623 396 304 0 28 chr5 136086034 136086176 -16451083 + (CA)n Simple_repeat Simple_repeat 1 138 0 3 1623 350 224 39 13 chr5 136086191 136086268 -16450991 + MT2B LTR ERVL 143 221 -380 3 1623 186 43 0 0 chr5 136086320 136086343 -16450916 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 3 1623 396 276 87 24 chr5 136086358 136086566 -16450693 - RLTR15 LTR ERVK -91 268 48 3 1623 461 214 0 82 chr5 136086650 136086747 -16450512 + B1_Mur1 SINE Alu 56 144 -5 3 1623 431 35 0 17 chr5 136086807 136086865 -16450394 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 3 1623 238 296 133 23 chr5 136086990 136087118 -16450141 - Tigger7 DNA MER2_type -2152 339 198 3 1623 830 202 31 84 chr5 136087125 136087352 -16449907 - MTD LTR MaLR -9 410 196 3 1623 234 0 0 0 chr5 136087375 136087401 -16449858 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3 1623 957 127 0 0 chr5 136087404 136087538 -16449721 - B1_Mus1 SINE Alu -14 134 1 3 1623 264 263 13 38 chr5 136087538 136087617 -16449642 - MER44B DNA MER2_type -439 111 35 3 1623 796 197 108 62 chr5 136087584 136087779 -16449480 + MT2A LTR ERVL 12 215 -318 3 1623 415 200 88 11 chr5 136087773 136087864 -16449395 - B3 SINE B2 -78 138 41 3 1623 279 0 0 0 chr5 136087947 136087978 -16449281 + (T)n Simple_repeat Simple_repeat 1 31 0 3 1623 487 291 38 12 chr5 136087980 136088140 -16449119 + RSINE1 SINE B4 2 165 0 3 1623 914 238 7 1 chr5 136088222 136088421 -16448838 + B3A SINE B2 3 203 -13 3 1623 263 232 0 55 chr5 136088423 136088496 -16448763 + B4A SINE B4 222 290 -2 3 1623 207 100 0 0 chr5 136088672 136088702 -16448557 + (TG)n Simple_repeat Simple_repeat 2 31 0 3 1623 606 51 0 0 chr5 136089395 136089473 -16447786 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 1623 410 219 23 61 chr5 136089480 136089626 -16447633 - B3A SINE B2 -62 133 1 3 1623 532 248 0 8 chr5 136089708 136089826 -16447433 - PB1D10 SINE Alu 0 117 1 3 1623 364 313 199 21 chr5 136089911 136090097 -16447162 + B4A SINE B4 31 249 -43 3 1623 198 0 0 0 chr5 136090113 136090135 -16447124 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 1623 302 274 123 55 chr5 136090135 136090190 -16447069 - L1M4 LINE L1 -3269 2877 2832 3 1623 1493 52 0 50 chr5 136090190 136090391 -16446868 - B2_Mm2 SINE B2 -4 191 1 3 1623 302 274 123 55 chr5 136090391 136090555 -16446704 - L1M4 LINE L1 -3315 2831 2643 3 1623 685 278 67 5 chr5 136090692 136090902 -16446357 + B4 SINE B4 4 226 -66 3 1623 696 204 8 0 chr5 136090905 136091025 -16446234 + B1_Mur1 SINE Alu 16 135 -13 3 1623 429 20 0 0 chr5 136091025 136091075 -16446184 + (GA)n Simple_repeat Simple_repeat 1 50 0 3 1623 533 269 8 23 chr5 136091075 136091087 -16446172 + B1_Mus1 SINE Alu 136 147 -1 3 1623 611 275 53 37 chr5 136091217 136091406 -16445853 + B4A SINE B4 3 194 -98 3 1623 373 147 0 64 chr5 136091428 136091537 -16445722 + GA-rich Low_complexity Low_complexity 2 103 0 3 1623 1103 119 0 6 chr5 136091537 136091714 -16445545 + (GAGAA)n Simple_repeat Simple_repeat 5 180 0 3 1623 288 130 0 0 chr5 136092427 136092473 -16444786 + (ATTG)n Simple_repeat Simple_repeat 2 47 0 3 1623 453 238 0 28 chr5 136092479 136092587 -16444672 - PB1D9 SINE Alu -13 107 3 3 1623 234 226 0 0 chr5 136092607 136092660 -16444599 - ID SINE ID -171 53 1 3 1623 550 217 0 9 chr5 136092711 136092827 -16444432 - PB1D10 SINE Alu -1 116 2 3 1623 1419 50 61 0 chr5 136092979 136093160 -16444099 + B2_Mm1a SINE B2 1 192 -1 3 1623 482 226 108 0 chr5 136093169 136093271 -16443988 + RSINE1 SINE B4 3 115 -50 3 1623 407 81 60 10 chr5 136093287 136093387 -16443872 + (CA)n Simple_repeat Simple_repeat 2 106 0 3 1623 280 266 112 59 chr5 136093396 136093431 -16443828 - YREP_Mm Unknown Unknown -1431 381 341 3 1623 460 250 0 178 chr5 136093431 136093611 -16443648 + B1_Mur1 SINE Alu 2 149 0 3 1623 280 266 112 59 chr5 136093611 136093727 -16443532 - YREP_Mm Unknown Unknown -1472 340 222 3 1623 633 231 8 0 chr5 136093630 136093751 -16443508 + ID_B1 SINE B4 81 202 -22 3 1623 1314 140 5 14 chr5 136093817 136094027 -16443232 + B3 SINE B2 4 211 -5 3 1623 451 254 137 32 chr5 136094038 136094215 -16443044 + RSINE1 SINE B4 2 171 -121 3 1623 941 160 0 0 chr5 136094308 136094452 -16442807 + B1_Mur4 SINE Alu 7 150 0 3 1623 258 32 0 0 chr5 136094464 136094495 -16442764 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1623 660 246 15 0 chr5 136094515 136094649 -16442610 + RSINE1 SINE B4 5 140 -25 3 1623 294 273 59 89 chr5 136094649 136094684 -16442575 + B2_Mm2 SINE B2 4 167 -28 3 1623 1135 56 0 7 chr5 136094877 136095020 -16442239 - B1_Mus1 SINE Alu -6 142 1 3 1623 265 225 175 0 chr5 136095096 136095176 -16442083 + ID_B1 SINE B4 83 176 -48 3 1623 519 60 0 0 chr5 136095177 136095244 -16442015 + (GA)n Simple_repeat Simple_repeat 1 67 0 3 1623 256 343 0 0 chr5 136095244 136095314 -16441945 + MER2 DNA MER2_type 2 71 -274 3 1623 432 266 0 60 chr5 136095316 136095432 -16441827 + ID_B1 SINE B4 82 190 -34 3 1623 392 285 60 34 chr5 136095426 136095575 -16441684 + ID_B1 SINE B4 72 224 0 3 1623 783 109 66 25 chr5 136095454 136095576 -16441683 + B1_Mur4 SINE Alu 24 150 0 3 1623 631 226 16 0 chr5 136095654 136095778 -16441481 - B3A SINE B2 -39 159 34 3 1623 3780 179 143 17 chr5 136096549 136097421 -16439838 + RMER19B LTR ERVK 1 885 -17 3 1623 1250 48 0 0 chr5 136097421 136097568 -16439691 + B1_Mus1 SINE Alu 2 148 0 3 1623 359 257 27 27 chr5 136097884 136097996 -16439263 + PB1D10 SINE Alu 1 112 -5 3 1623 344 284 12 36 chr5 136098028 136098112 -16439147 + ID4 SINE ID 2 83 0 3 1623 282 328 16 103 chr5 136098112 136098154 -16439105 + ID_B1 SINE B4 2 116 -108 3 1623 1218 101 0 0 chr5 136098167 136098496 -16438763 + (CA)n Simple_repeat Simple_repeat 1 329 0 3 1623 568 238 162 22 chr5 136098520 136098705 -16438554 + B3 SINE B2 5 215 -1 3 1623 821 250 38 5 chr5 136098736 136098945 -16438314 + ID_B1 SINE B4 5 220 -4 3 1623 271 262 115 53 chr5 136099384 136099495 -16437764 + MTEa LTR MaLR 13 130 -249 3 1623 3731 101 12 76 chr5 136099495 136100140 -16437119 + RLTR6_Mm LTR ERV1 1 604 -50 3 1623 3557 48 30 21 chr5 136100140 136100871 -16436388 + MMVL30-int LTR ERV1 1 829 -6949 3 1623 426 181 108 49 chr5 136100865 136101031 -16436228 + MMVL30-int LTR ERV1 280 533 -7023 3 1623 24018 36 35 15 chr5 136101302 136104228 -16433031 + MMVL30-int LTR ERV1 716 3698 0 3 1623 3635 106 14 88 chr5 136104228 136104888 -16432371 + RLTR6_Mm LTR ERV1 1 611 -43 3 1623 576 202 50 75 chr5 136104853 136105019 -16432240 + MTEa LTR MaLR 127 272 -107 3 1623 303 49 0 0 chr5 136105053 136105094 -16432165 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 1623 213 94 0 0 chr5 136105415 136105447 -16431812 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 1623 585 42 0 0 chr5 136105639 136105711 -16431548 + (TTCC)n Simple_repeat Simple_repeat 3 74 0 3 1623 189 0 0 0 chr5 136105753 136105774 -16431485 + (TGG)n Simple_repeat Simple_repeat 1 21 0 3 1623 741 186 31 0 chr5 136105774 136105903 -16431356 + B1_Mur4 SINE Alu 17 149 -1 3 1623 310 253 0 65 chr5 136106270 136106363 -16430896 + RSINE1 SINE B4 2 88 -77 3 1623 421 263 41 66 chr5 136106476 136106598 -16430661 - RSINE1 SINE B4 -2 163 45 3 1623 463 256 165 0 chr5 136107443 136107576 -16429683 + ID_B1 SINE B4 3 157 -67 3 1623 244 222 0 36 chr5 136107619 136107675 -16429584 + Lx8 LINE L1 7169 7222 -251 3 1623 623 78 11 0 chr5 136107729 136107819 -16429440 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 3 1623 228 111 0 0 chr5 136108058 136108094 -16429165 + (A)n Simple_repeat Simple_repeat 1 36 0 3 1623 621 209 50 14 chr5 136108094 136108235 -16429024 + RSINE1 SINE B4 3 148 -17 3 1623 294 29 0 0 chr5 136108283 136108318 -16428941 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1623 601 264 47 7 chr5 136109605 136109754 -16427505 - RSINE1 SINE B4 -6 159 5 3 1623 223 62 0 77 chr5 136109980 136110032 -16427227 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 3 1623 489 246 35 50 chr5 136110041 136110182 -16427077 - B1F SINE Alu 0 149 11 3 1623 807 127 16 0 chr5 136110248 136110374 -16426885 + B1_Mur2 SINE Alu 22 149 0 3 1623 207 0 0 0 chr5 136110375 136110398 -16426861 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3 1623 343 337 33 0 chr5 136110571 136110663 -16426596 + ID_B1 SINE B4 81 175 -49 3 1623 562 212 0 29 chr5 136110581 136110683 -16426576 + PB1D10 SINE Alu 13 111 -6 3 1623 325 255 27 16 chr5 136110684 136110789 -16426470 + B1_Mur1 SINE Alu 2 138 -11 3 1623 928 157 49 33 chr5 136111123 136111307 -16425952 + B3A SINE B2 2 188 -10 3 1623 541 262 78 42 chr5 136111603 136111770 -16425489 - ID_B1 SINE B4 -7 217 45 4 1623 216 225 69 0 chr5 136112357 136112437 -16424822 + MIR SINE MIR 90 176 -92 4 1623 544 246 189 25 chr5 136112549 136112745 -16424514 + B4A SINE B4 2 229 -63 4 1623 219 69 0 0 chr5 136112944 136112973 -16424286 + (T)n Simple_repeat Simple_repeat 1 29 0 4 1623 265 309 74 9 chr5 136113414 136113522 -16423737 - PB1D10 SINE Alu 0 117 3 4 1623 793 227 62 29 chr5 136113574 136113783 -16423476 - B3 SINE B2 0 216 1 4 1623 655 204 35 49 chr5 136113803 136113947 -16423312 - B1F1 SINE Alu -7 142 1 4 1623 210 278 133 44 chr5 136114029 136114142 -16423117 - ID_B1 SINE B4 -98 126 4 4 1623 469 236 21 121 chr5 136114436 136114501 -16422758 + RSINE1 SINE B4 36 126 -39 4 1623 240 283 41 66 chr5 136114501 136114532 -16422727 - RMER12 LTR ERVK -460 862 834 4 1623 351 0 0 0 chr5 136114532 136114571 -16422688 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1623 469 236 21 121 chr5 136114571 136114614 -16422645 + RSINE1 SINE B4 127 161 -4 4 1623 240 283 41 66 chr5 136114614 136114660 -16422599 - RMER12 LTR ERVK -489 833 745 4 1623 597 179 9 9 chr5 136115431 136115538 -16421721 + ZP3AR Satellite Satellite 42 148 -64 4 1623 304 263 79 0 chr5 136115538 136115614 -16421645 + ID4 SINE ID 1 82 -1 4 1623 193 256 177 57 chr5 136115986 136116110 -16421149 - MIR3 SINE MIR -68 140 2 4 1623 453 291 45 0 chr5 136116691 136116801 -16420458 + RSINE1 SINE B4 6 120 -45 4 1623 378 0 0 0 chr5 136116806 136116848 -16420411 + (TC)n Simple_repeat Simple_repeat 1 42 0 4 1623 417 20 0 0 chr5 136116848 136116897 -16420362 + (CA)n Simple_repeat Simple_repeat 1 50 0 4 1623 750 221 0 7 chr5 136116930 136117071 -16420188 + B1_Mur1 SINE Alu 8 147 -2 4 1623 334 216 40 0 chr5 136117123 136117197 -16420062 - ID4 SINE ID -6 77 1 4 1623 1156 82 0 13 chr5 136117255 136117404 -16419855 - B1_Mus1 SINE Alu 0 148 2 4 1623 1075 106 49 32 chr5 136117414 136117599 -16419660 - B2_Mm2 SINE B2 -7 188 1 4 1623 3197 44 18 3 chr5 136118002 136118178 -16419081 - MTA_Mm LTR MaLR 0 396 215 4 1623 1704 26 0 0 chr5 136118178 136118370 -16418889 - B2_Mm1a SINE B2 0 193 2 4 1623 3197 44 18 3 chr5 136118370 136118583 -16418676 - MTA_Mm LTR MaLR -182 214 2 4 1623 472 331 28 44 chr5 136118583 136118763 -16418496 + ID_B1 SINE B4 36 212 -12 4 1623 366 281 47 47 chr5 136119334 136119461 -16417798 + B1F SINE Alu 21 147 -2 4 1623 319 229 71 0 chr5 136119472 136119542 -16417717 + BC1_Mm scRNA scRNA 16 90 -62 4 1623 221 230 30 90 chr5 136119653 136119679 -16417580 + B1_Mur3 SINE Alu 49 111 -38 4 1623 233 195 0 0 chr5 136119679 136119720 -16417539 + ID_B1 SINE B4 149 189 -35 4 1623 782 196 36 0 chr5 136120233 136120371 -16416888 + B1_Mur2 SINE Alu 1 143 -6 4 1623 413 159 185 43 chr5 136120420 136120510 -16416749 + B1_Mur3 SINE Alu 1 103 -46 4 1623 316 234 24 61 chr5 136120510 136120592 -16416667 + ID4_ SINE ID 2 80 -3 4 1623 236 295 94 10 chr5 136120515 136120611 -16416648 + B4A SINE B4 1 104 -188 4 1623 3930 47 17 0 chr5 136120685 136121152 -16416107 - MT2C_Mm LTR ERVL 0 475 1 4 1623 872 216 158 33 chr5 136122235 136122475 -16414784 + B4A SINE B4 1 270 -22 4 1623 219 289 90 117 chr5 136122550 136122638 -16414621 + ID SINE ID 1 84 -140 4 1623 267 318 45 9 chr5 136122638 136122749 -16414510 + PB1D10 SINE Alu 3 117 0 4 1623 1141 76 14 0 chr5 136123357 136123502 -16413757 + B1_Mus1 SINE Alu 2 148 0 4 1623 1254 48 0 0 chr5 136123634 136123781 -16413478 + B1_Mus2 SINE Alu 1 147 0 4 1623 363 44 0 0 chr5 136123795 136123840 -16413419 + (TA)n Simple_repeat Simple_repeat 1 45 0 4 1623 3192 93 4 68 chr5 136124188 136124660 -16412599 - RLTR41 LTR ERV1 -4 442 1 4 1623 750 215 15 0 chr5 136124744 136124879 -16412380 - B1_Mur1 SINE Alu -7 142 6 4 1623 237 294 0 14 chr5 136124823 136124892 -16412367 + YREP_Mm Unknown Unknown 256 323 -1489 4 1623 664 231 90 34 chr5 136124889 136125077 -16412182 - B3A SINE B2 -11 184 1 4 1623 916 134 0 34 chr5 136125095 136125242 -16412017 - B1_Mus1 SINE Alu -6 142 1 4 1623 654 269 0 0 chr5 136125364 136125505 -16411754 - B1_Mur1 SINE Alu -6 143 3 4 1623 1038 131 0 5 chr5 136125546 136125752 -16411507 + (TTC)n Simple_repeat Simple_repeat 1 205 0 4 1623 501 200 73 45 chr5 136125755 136125865 -16411394 - ID_B1 SINE B4 -1 223 111 4 1623 1018 32 0 0 chr5 136125868 136125991 -16411268 - B1_Mus1 SINE Alu -2 146 24 4 1623 375 145 32 0 chr5 136126046 136126108 -16411151 + ID4_ SINE ID 3 66 -17 4 1623 1053 105 7 0 chr5 136126150 136126293 -16410966 + B1_Mus1 SINE Alu 4 147 -1 4 1623 183 212 0 0 chr5 136126629 136126662 -16410597 + L2b LINE L2 3332 3364 -11 4 1623 735 22 0 0 chr5 136128253 136128342 -16408917 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 1623 217 204 23 0 chr5 136128352 136128396 -16408863 - PB1D9 SINE Alu -42 78 34 4 1623 272 182 0 0 chr5 136128549 136128593 -16408666 + B3 SINE B2 162 205 -11 4 1623 1168 73 115 0 chr5 136128596 136128761 -16408498 - B2_Mm2 SINE B2 -11 184 1 4 1623 192 111 0 0 chr5 136128764 136128800 -16408459 + (T)n Simple_repeat Simple_repeat 1 36 0 4 1623 284 191 0 0 chr5 136128810 136128857 -16408402 - PB1 SINE Alu -63 64 18 4 1623 342 0 0 0 chr5 136128868 136128906 -16408353 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1623 743 235 0 13 chr5 136129538 136129693 -16407566 - RSINE1 SINE B4 -10 155 3 4 1623 360 0 0 0 chr5 136129937 136129977 -16407282 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1623 603 199 138 90 chr5 136130177 136130365 -16406894 + B3A SINE B2 2 198 0 4 1623 678 279 104 35 chr5 136130373 136130633 -16406626 + RMER5 LTR ERV1 84 361 -173 4 1623 1566 97 0 30 chr5 136130661 136130893 -16406366 + RMER4B LTR ERVK 1 225 -360 4 1623 2116 84 0 137 chr5 136130893 136131195 -16406064 + ORR1A2 LTR MaLR 1 272 -55 4 1623 1182 58 0 0 chr5 136131195 136131334 -16405925 + B1_Mus1 SINE Alu 1 139 -9 4 1623 2116 84 0 137 chr5 136131334 136131404 -16405855 + ORR1A2 LTR MaLR 273 322 -5 4 1623 1710 136 126 30 chr5 136131401 136131734 -16405525 + RMER4B LTR ERVK 221 585 0 4 1623 242 288 0 17 chr5 136131783 136131843 -16405416 + RMER5 LTR ERV1 465 523 -11 4 1623 911 250 30 43 chr5 136132465 136132699 -16404560 + MTE2b LTR MaLR 5 235 -144 4 1623 267 202 0 0 chr5 136132707 136132801 -16404458 + GA-rich Low_complexity Low_complexity 1 94 0 4 1623 360 176 72 14 chr5 136132893 136132962 -16404297 - PB1D10 SINE Alu -44 73 1 4 1623 2505 147 41 16 chr5 136133191 136133632 -16403627 + RLTR11B LTR ERVK 1 452 -1 4 1623 309 131 46 9 chr5 136134197 136134305 -16402954 + (TA)n Simple_repeat Simple_repeat 2 113 0 4 1623 25 31 0 0 chr5 136134312 136134344 -16402915 + AT_rich Low_complexity Low_complexity 1 32 0 4 1623 1426 175 9 98 chr5 136134372 136134603 -16402656 + RLTR11A LTR ERVK 221 454 -106 4 1623 1159 79 121 0 chr5 136134603 136134768 -16402491 + B2_Mm1a SINE B2 1 185 -8 4 1623 1252 41 0 0 chr5 136134771 136134918 -16402341 + B1_Mus1 SINE Alu 2 148 0 4 1623 1426 153 0 104 chr5 136134918 136134976 -16402283 + RLTR11A LTR ERVK 451 489 -39 4 1623 183 49 73 0 chr5 136134983 136135024 -16402235 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 4 1623 651 257 22 50 chr5 136135115 136135295 -16401964 + B4A SINE B4 1 175 -117 4 1623 345 291 9 9 chr5 136135418 136135529 -16401730 + PB1D10 SINE Alu 5 115 -2 4 1623 1376 84 41 14 chr5 136135553 136135792 -16401467 + ZP3AR Satellite Satellite 1 245 0 4 1623 423 309 6 121 chr5 136135740 136135841 -16401418 + ID SINE ID 1 81 -143 4 1623 381 273 60 52 chr5 136135841 136135957 -16401302 + PB1D10 SINE Alu 1 117 0 4 1623 273 128 0 0 chr5 136136303 136136350 -16400909 + (TG)n Simple_repeat Simple_repeat 1 47 0 4 1623 269 304 14 14 chr5 136136350 136136420 -16400839 - ZP3AR Satellite Satellite -122 90 21 4 1623 252 0 0 0 chr5 136136925 136136953 -16400306 + (TG)n Simple_repeat Simple_repeat 2 29 0 4 1623 241 248 31 117 chr5 136136960 136137088 -16400171 - B1_Mur3 SINE Alu -25 124 8 4 1623 365 224 148 70 chr5 136136988 136137103 -16400156 - ID_B1 SINE B4 -21 203 80 4 1623 301 238 168 19 chr5 136137100 136137207 -16400052 - B1F2 SINE Alu 0 149 27 4 1623 734 226 27 27 chr5 136137242 136137428 -16399831 - B3A SINE B2 -4 194 9 4 1623 566 252 45 22 chr5 136137444 136137539 -16399720 - ID_B1 SINE B4 -2 222 123 4 1623 558 0 0 0 chr5 136137539 136137601 -16399658 + (TTCCC)n Simple_repeat Simple_repeat 3 64 0 4 1623 566 252 45 22 chr5 136137601 136137639 -16399620 - ID_B1 SINE B4 -102 122 86 4 1623 686 209 15 0 chr5 136137818 136137952 -16399307 - URR1B DNA MER1_type -2 223 88 4 1623 547 191 94 77 chr5 136138014 136138184 -16399075 + B3A SINE B2 1 173 -25 4 1623 224 111 0 22 chr5 136138204 136138250 -16399009 + (TTAGGG)n Simple_repeat Simple_repeat 6 50 0 4 1623 458 208 7 0 chr5 136138285 136138439 -16398820 + (CCCTAA)n Simple_repeat Simple_repeat 5 159 0 4 1623 950 141 0 7 chr5 136138494 136139063 -16398196 + (CA)n Simple_repeat Simple_repeat 1 564 0 4 1623 24 0 0 0 chr5 136139096 136139120 -16398139 + AT_rich Low_complexity Low_complexity 1 24 0 4 1623 1268 21 7 0 chr5 136139130 136139273 -16397986 + B1_Mm SINE Alu 2 145 -2 4 1623 239 53 51 34 chr5 136139273 136139332 -16397927 + (CAAAAA)n Simple_repeat Simple_repeat 1 60 0 4 1623 868 147 212 18 chr5 136139522 136139744 -16397515 + RMER10B LTR ERVL 1 265 -133 4 1623 305 226 21 0 chr5 136139746 136139839 -16397420 + CT-rich Low_complexity Low_complexity 3 97 0 4 1623 850 151 108 5 chr5 136139839 136140025 -16397234 + RMER10B LTR ERVL 194 398 0 4 1623 522 276 243 0 chr5 136140225 136140426 -16396833 + B4A SINE B4 1 250 -42 4 1623 864 164 8 0 chr5 136140427 136140561 -16396698 + B1_Mur4 SINE Alu 1 135 -15 5 1623 3482 154 124 2 chr5 136140561 136140849 -16396410 + RMER6D LTR ERVK 4 335 -385 5 1623 195 42 0 0 chr5 136140849 136140873 -16396386 + (GA)n Simple_repeat Simple_repeat 2 25 0 5 1623 3482 154 124 2 chr5 136140873 136141223 -16396036 + RMER6D LTR ERVK 336 719 -1 5 1623 583 41 0 0 chr5 136141227 136141300 -16395959 + B1_Mus2 SINE Alu 75 147 0 5 1623 414 0 0 0 chr5 136141317 136141363 -16395896 + (TA)n Simple_repeat Simple_repeat 2 47 0 5 1623 915 176 22 28 chr5 136141370 136141545 -16395714 - RLTR25B LTR ERVK -535 493 320 5 1623 1141 64 7 0 chr5 136141545 136141685 -16395574 + B1_Mus1 SINE Alu 2 142 -6 5 1623 219 188 0 0 chr5 136141690 136141738 -16395521 + A-rich Low_complexity Low_complexity 1 48 0 5 1623 1413 154 130 96 chr5 136141738 136142061 -16395198 - RLTR25B LTR ERVK -694 334 1 5 1623 262 231 156 32 chr5 136142280 136142374 -16394885 + RLTR13D2 LTR ERVK 1 105 -797 5 1623 1282 102 11 0 chr5 136142531 136142707 -16394552 + B2_Mm1t SINE B2 2 179 -14 5 1623 511 97 310 26 chr5 136142764 136142880 -16394379 + B2_Mm2 SINE B2 47 195 0 5 1623 1538 32 31 21 chr5 136143107 136143298 -16393961 + B2_Mm1a SINE B2 1 193 0 5 1623 1381 96 11 0 chr5 136143311 136143499 -16393760 + B2_Mm1t SINE B2 1 190 -3 5 1623 327 268 115 11 chr5 136144353 136144440 -16392819 + B1_Mus2 SINE Alu 1 96 -51 5 1623 880 247 22 38 chr5 136144635 136144820 -16392439 + B3A SINE B2 1 182 -16 5 1623 450 0 0 0 chr5 136145161 136145211 -16392048 + (GA)n Simple_repeat Simple_repeat 1 50 0 5 1623 318 139 58 0 chr5 136145211 136145266 -16391993 + B1F1 SINE Alu 58 149 0 5 1623 438 186 0 0 chr5 136145296 136145382 -16391877 + GA-rich Low_complexity Low_complexity 1 86 0 5 1623 1077 89 14 0 chr5 136145561 136145707 -16391552 - B1_Mur4 SINE Alu 0 150 3 5 1623 200 266 62 15 chr5 136146234 136146299 -16390960 + MIRm SINE MIR 86 153 -123 5 1623 649 100 194 32 chr5 136146407 136146531 -16390728 + URR1A DNA MER1_type 83 226 0 5 1623 1279 112 15 0 chr5 136146729 136146926 -16390333 + ZP3AR Satellite Satellite 2 201 -11 5 1623 252 301 0 0 chr5 136146927 136147000 -16390259 + ID4 SINE ID 2 74 -9 5 1623 180 0 0 0 chr5 136147194 136147214 -16390045 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 5 1623 447 208 0 0 chr5 136147491 136147568 -16389691 + PB1D10 SINE Alu 36 112 -5 5 1623 505 313 40 0 chr5 136147589 136147739 -16389520 + RSINE1 SINE B4 10 165 0 5 1623 218 177 43 26 chr5 136147938 136148054 -16389205 + (TCTA)n Simple_repeat Simple_repeat 3 120 0 5 1623 315 259 293 0 chr5 136148057 136148198 -16389061 - ID_B1 SINE B4 -13 211 30 5 1623 577 284 8 0 chr5 136148200 136148327 -16388932 + B1F SINE Alu 6 133 -16 5 1623 247 176 0 150 chr5 136148436 136148516 -16388743 - ID2 SINE ID -15 68 1 5 1623 1052 164 25 25 chr5 136148516 136148716 -16388543 - ZP3AR Satellite Satellite -11 201 2 5 1623 555 234 27 14 chr5 136148730 136148877 -16388382 - B1F SINE Alu 0 149 1 5 1623 819 182 0 13 chr5 136149235 136149385 -16387874 + B1_Mur4 SINE Alu 1 148 -2 5 1623 1007 243 20 85 chr5 136149397 136149703 -16387556 + B4 SINE B4 5 290 -2 5 1623 251 155 169 17 chr5 136149730 136149789 -16387470 + B1F1 SINE Alu 81 148 -1 5 1623 612 190 35 4 chr5 136149958 136150223 -16387036 + (TG)n Simple_repeat Simple_repeat 1 273 0 5 1623 262 0 53 0 chr5 136150680 136150718 -16386541 + (CCCCCA)n Simple_repeat Simple_repeat 3 42 0 5 1623 640 250 21 7 chr5 136151273 136151414 -16385845 + RSINE1 SINE B4 4 146 -19 5 1623 708 253 125 42 chr5 136151440 136151704 -16385555 + B4A SINE B4 3 288 -4 5 1623 1380 101 11 0 chr5 136152344 136152533 -16384726 - B2_Mm1t SINE B2 0 193 3 5 1623 253 266 61 210 chr5 136152536 136152581 -16384678 - MTD LTR MaLR -4 366 328 5 1623 762 106 179 0 chr5 136152581 136152704 -16384555 + B1_Mur4 SINE Alu 1 145 -5 5 1623 843 200 78 57 chr5 136152704 136152930 -16384329 - MTD LTR MaLR -31 390 196 5 1623 687 179 206 40 chr5 136152930 136153105 -16384154 - B3 SINE B2 -12 204 1 5 1623 658 235 62 201 chr5 136153105 136153193 -16384066 - MTD LTR MaLR -218 203 129 5 1623 460 184 29 0 chr5 136153200 136153286 -16383973 + B1_Mur3 SINE Alu 11 99 -21 5 1623 257 287 148 44 chr5 136153254 136153389 -16383870 - MTD LTR MaLR -266 153 5 5 1623 1232 68 43 0 chr5 136153468 136153631 -16383628 + B2_Mm2 SINE B2 23 192 -3 5 1623 249 312 75 38 chr5 136153667 136153747 -16383512 + B4 SINE B4 90 172 -120 5 1623 387 0 0 0 chr5 136153773 136153816 -16383443 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 5 1623 1206 181 5 18 chr5 136154076 136154295 -16382964 + B3 SINE B2 1 216 0 5 1623 1190 48 0 27 chr5 136154300 136154449 -16382810 + B1_Mm SINE Alu 1 145 -2 5 1623 446 295 9 0 chr5 136154730 136154835 -16382424 - RSINE1 SINE B4 -58 107 2 5 1623 450 36 0 0 chr5 136154933 136154989 -16382270 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1623 450 281 26 0 chr5 136155003 136155117 -16382142 - B1F SINE Alu -32 117 1 5 1623 423 0 0 0 chr5 136155122 136155169 -16382090 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1623 386 254 0 0 chr5 136155172 136155239 -16382020 - B4 SINE B4 -4 288 222 5 1623 1253 48 0 0 chr5 136155306 136155452 -16381807 + B1_Mus2 SINE Alu 1 146 -1 5 1623 372 111 0 0 chr5 136155453 136155516 -16381743 + (A)n Simple_repeat Simple_repeat 1 63 0 5 1623 578 226 88 0 chr5 136155530 136155667 -16381592 - B3 SINE B2 -67 149 1 5 1623 307 314 86 61 chr5 136155690 136155853 -16381406 - RMER15 LTR ERVL -4 571 405 5 1623 555 323 93 0 chr5 136156154 136156315 -16380944 - B4 SINE B4 -115 177 2 5 1623 984 124 28 0 chr5 136156344 136156489 -16380770 + B1_Mur4 SINE Alu 2 150 0 5 1623 267 140 0 23 chr5 136156503 136156547 -16380712 - PB1D9 SINE Alu -28 92 50 5 1623 1013 219 212 31 chr5 136157106 136157427 -16379832 - MTE2a LTR MaLR 0 379 1 5 1623 993 84 0 0 chr5 136157660 136157803 -16379456 + ZP3AR Satellite Satellite 6 148 -64 5 1623 334 244 64 0 chr5 136157803 136157881 -16379378 + ID4 SINE ID 1 83 0 5 1623 1239 54 0 0 chr5 136158151 136158299 -16378960 + B1_Mus1 SINE Alu 1 148 0 5 1623 252 0 0 0 chr5 136158299 136158327 -16378932 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1623 337 231 198 33 chr5 136158346 136158467 -16378792 + B1F1 SINE Alu 1 141 -8 5 1623 410 197 0 0 chr5 136159379 136159445 -16377814 + B1_Mur1 SINE Alu 82 147 -2 5 1623 581 159 0 0 chr5 136159509 136159597 -16377662 + RSINE1 SINE B4 2 89 -76 5 1623 414 0 0 0 chr5 136159647 136159693 -16377566 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1623 477 0 0 0 chr5 136159695 136159748 -16377511 + (CCA)n Simple_repeat Simple_repeat 1 53 0 5 1623 307 299 0 230 chr5 136160035 136160118 -16377141 - RSINE1 SINE B4 0 165 94 5 1623 1239 55 0 0 chr5 136160118 136160264 -16376995 + B1_Mus2 SINE Alu 2 147 0 5 1623 307 299 0 230 chr5 136160264 136160276 -16376983 - RSINE1 SINE B4 -72 93 93 5 1623 198 0 0 0 chr5 136160276 136160298 -16376961 + (GA)n Simple_repeat Simple_repeat 2 23 0 5 1623 307 299 0 230 chr5 136160298 136160414 -16376845 - RSINE1 SINE B4 -72 93 2 5 1623 182 208 0 59 chr5 136160604 136160655 -16376604 + MIRm SINE MIR 69 116 -160 5 1623 813 165 290 36 chr5 136160657 136160987 -16376272 + RMER10A LTR ERVL 1 415 -27 5 1623 731 69 0 10 chr5 136160987 136161090 -16376169 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 5 1623 303 218 192 60 chr5 136161109 136161260 -16375999 - L1MD LINE L1 -778 5368 5198 5 1623 614 265 27 20 chr5 136161350 136161500 -16375759 - RSINE1 SINE B4 -11 154 4 5 1623 600 268 18 19 chr5 136161609 136161774 -16375485 - ID_B1 SINE B4 0 224 70 5 1623 194 91 30 0 chr5 136161777 136161810 -16375449 + (TCC)n Simple_repeat Simple_repeat 1 34 0 5 1623 615 284 7 0 chr5 136161810 136161951 -16375308 - B1F2 SINE Alu -5 144 3 5 1623 237 159 23 0 chr5 136162222 136162266 -16374993 + ZP3AR Satellite Satellite 51 95 -117 5 1623 272 317 12 0 chr5 136162266 136162348 -16374911 + ID4_ SINE ID 1 83 0 5 1623 249 33 0 0 chr5 136162377 136162407 -16374852 + (CG)n Simple_repeat Simple_repeat 2 31 0 5 1623 270 0 0 0 chr5 136162407 136162436 -16374823 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1623 878 123 11 0 chr5 136162802 136162943 -16374316 + B1_Mus1 SINE Alu 2 148 0 5 1623 216 0 0 0 chr5 136162955 136162979 -16374280 + (TG)n Simple_repeat Simple_repeat 2 25 0 5 1623 2211 77 27 10 chr5 136163035 136163336 -16373923 - L1_Mus3 LINE L1 -2 6636 6331 5 1623 263 347 10 0 chr5 136163375 136163473 -16373786 + ID_B1 SINE B4 125 223 -1 5 1623 939 127 11 6 chr5 136163574 136163748 -16373511 + (TTC)n Simple_repeat Simple_repeat 3 177 0 5 1623 633 191 0 34 chr5 136163752 136163871 -16373388 - B1_Mur1 SINE Alu -5 144 30 5 1623 353 290 91 8 chr5 136163920 136164052 -16373207 - RSINE1 SINE B4 -18 147 5 5 1623 337 229 177 71 chr5 136164216 136164329 -16372930 - ID_B1 SINE B4 0 224 100 5 1623 366 263 111 15 chr5 136166021 136166032 -16371227 - B1F1 SINE Alu 0 149 135 5 1623 564 62 0 0 chr5 136166032 136166113 -16371146 + (TG)n Simple_repeat Simple_repeat 1 81 0 5 1623 366 263 111 15 chr5 136166113 136166236 -16371023 - B1F1 SINE Alu -15 134 2 5 1623 454 210 170 0 chr5 136166285 136166385 -16370874 + B1F1 SINE Alu 29 145 -4 5 1623 1581 21 16 21 chr5 136166695 136166888 -16370371 - B2_Mm1a SINE B2 0 193 2 5 1623 660 56 0 0 chr5 136167772 136167862 -16369397 + B1_Mm SINE Alu 58 147 0 5 1623 229 371 43 49 chr5 136168042 136168072 -16369187 - B4A SINE B4 -43 249 161 5 1623 468 231 113 8 chr5 136168072 136168197 -16369062 - PB1D7 SINE Alu -2 147 10 6 1623 229 371 43 49 chr5 136168197 136168226 -16369033 - B4A SINE B4 -43 160 67 5 1623 287 303 29 57 chr5 136168351 136168362 -16368897 - B1F SINE Alu -18 131 30 6 1623 365 281 0 53 chr5 136168362 136168456 -16368803 - ID_B1 SINE B4 -25 199 111 6 1623 389 156 42 0 chr5 136168472 136168568 -16368691 + CT-rich Low_complexity Low_complexity 2 101 0 6 1623 1608 41 0 20 chr5 136168677 136168874 -16368385 + B2_Mm1a SINE B2 1 193 0 6 1623 1847 94 107 38 chr5 136168874 136169193 -16368066 + Lx LINE L1 6314 6654 0 6 1623 687 239 28 0 chr5 136169830 136169972 -16367287 - RSINE1 SINE B4 -11 154 9 6 1623 301 268 0 35 chr5 136169986 136170071 -16367188 - PB1D10 SINE Alu -7 110 29 6 1623 566 254 36 0 chr5 136170068 136170206 -16367053 - B3A SINE B2 -55 143 1 6 1623 681 77 404 44 chr5 136170379 136170515 -16366744 - B2_Mm2 SINE B2 -9 186 2 6 1623 941 255 19 0 chr5 136170650 136170862 -16366397 + ID_B1 SINE B4 3 218 -6 6 1623 368 132 29 0 chr5 136170862 136170930 -16366329 + GA-rich Low_complexity Low_complexity 1 70 0 6 1623 342 152 0 0 chr5 136171715 136171774 -16365485 + CT-rich Low_complexity Low_complexity 4 62 0 6 1623 572 245 58 0 chr5 136171793 136171932 -16365327 - RSINE1 SINE B4 -5 160 14 6 1623 281 263 65 13 chr5 136171946 136172023 -16365236 + ID4 SINE ID 1 81 -2 6 1623 527 252 13 52 chr5 136172342 136172497 -16364762 - RSINE1 SINE B4 0 165 17 6 1623 1059 191 39 10 chr5 136172662 136172868 -16364391 - B3 SINE B2 -4 212 1 6 1623 1054 137 54 16 chr5 136172893 136172921 -16364338 - B2_Mm2 SINE B2 -3 192 165 6 1623 189 0 0 0 chr5 136172921 136172942 -16364317 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 6 1623 1054 137 54 16 chr5 136172942 136173098 -16364161 - B2_Mm2 SINE B2 -31 164 1 6 1623 591 224 60 0 chr5 136173126 136173260 -16363999 - ID_B1 SINE B4 -2 222 81 6 1623 569 95 26 79 chr5 136173317 136173431 -16363828 + B1_Mur3 SINE Alu 42 149 0 6 1623 419 248 86 0 chr5 136173648 136173753 -16363506 + PB1D7 SINE Alu 1 114 -6 6 1623 207 87 39 98 chr5 136174963 136174985 -16362274 + T-rich Low_complexity Low_complexity 32 49 0 6 1623 942 137 13 40 chr5 136174985 136175137 -16362122 - B1_Mus1 SINE Alu 0 148 1 6 1623 207 87 39 98 chr5 136175137 136175150 -16362109 + T-rich Low_complexity Low_complexity 17 31 0 6 1623 1241 48 0 0 chr5 136175150 136175297 -16361962 - B1_Mus1 SINE Alu 0 148 2 6 1623 207 87 39 98 chr5 136175297 136175311 -16361948 + T-rich Low_complexity Low_complexity 3 16 0 6 1623 897 61 0 67 chr5 136175328 136175521 -16361738 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1623 228 167 0 0 chr5 136175521 136175557 -16361702 - B3A SINE B2 -67 131 96 6 1623 786 261 35 20 chr5 136175601 136175804 -16361455 + B3 SINE B2 2 207 -9 6 1623 212 297 57 47 chr5 136176131 136176237 -16361022 - B3A SINE B2 0 198 92 6 1623 952 131 7 7 chr5 136176270 136176416 -16360843 - B1_Mus2 SINE Alu -1 146 1 6 1623 444 161 0 0 chr5 136176429 136176510 -16360749 + CT-rich Low_complexity Low_complexity 3 83 0 6 1623 460 195 151 8 chr5 136176542 136176661 -16360598 - RSINE1 SINE B4 -28 137 2 6 1623 310 237 39 49 chr5 136176847 136176949 -16360310 - PB1D10 SINE Alu -12 105 5 6 1623 438 232 0 0 chr5 136177632 136177714 -16359545 - ID4_ SINE ID -1 82 1 6 1623 241 268 18 0 chr5 136177714 136177770 -16359489 - ZP3AR Satellite Satellite -117 95 39 6 1623 498 252 72 29 chr5 136177770 136177909 -16359350 - B1F2 SINE Alu -1 148 4 6 1623 180 263 0 0 chr5 136177926 136178002 -16359257 + (TG)n Simple_repeat Simple_repeat 1 76 0 6 1623 318 222 141 22 chr5 136178262 136178354 -16358905 - B4A SINE B4 -58 234 132 6 1623 382 228 0 0 chr5 136178499 136178578 -16358681 - B4 SINE B4 -212 80 2 6 1623 385 289 60 0 chr5 136178578 136178744 -16358515 - L1MC4a LINE L1 -5 7877 7702 6 1623 415 333 42 18 chr5 136178749 136178917 -16358342 - MER58A DNA MER1_type -8 216 45 6 1623 479 250 154 0 chr5 136178995 136179151 -16358108 + MTE2a LTR MaLR 1 180 -199 6 1623 859 249 20 30 chr5 136179151 136179350 -16357909 + B3A SINE B2 2 198 0 6 1623 454 224 2 26 chr5 136179413 136179544 -16357715 - B1F SINE Alu -25 124 1 6 1623 277 297 119 20 chr5 136179544 136179607 -16357652 - B4A SINE B4 -204 88 11 6 1623 952 108 145 13 chr5 136179949 136180108 -16357151 + B2_Mm2 SINE B2 3 182 -13 6 1623 295 333 8 0 chr5 136180141 136180261 -16356998 + (TATG)n Simple_repeat Simple_repeat 1 121 0 6 1623 259 198 0 40 chr5 136180297 136180397 -16356862 + (TATG)n Simple_repeat Simple_repeat 2 97 0 6 1623 195 272 0 0 chr5 136180470 136180584 -16356675 + (TG)n Simple_repeat Simple_repeat 1 114 0 6 1623 258 233 66 11 chr5 136180827 136180918 -16356341 - L1MC4a LINE L1 -451 7591 7496 6 1623 668 168 99 0 chr5 136180990 136181121 -16356138 - B1_Mur2 SINE Alu -1 148 5 6 1623 533 292 25 35 chr5 136181178 136181380 -16355879 - B4A SINE B4 -16 276 77 6 1623 236 256 97 32 chr5 136181583 136181676 -16355583 - B3A SINE B2 -2 196 98 6 1623 204 65 20 61 chr5 136182086 136182135 -16355124 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 6 1623 579 222 170 0 chr5 136182158 136182293 -16354966 - RSINE1 SINE B4 -4 161 4 6 1623 861 157 64 0 chr5 136182313 136182453 -16354806 + B1_Mur2 SINE Alu 1 149 0 6 1623 941 136 14 7 chr5 136182635 136182783 -16354476 - B1_Mur4 SINE Alu 0 150 2 6 1623 477 271 28 0 chr5 136182817 136182924 -16354335 - RSINE1 SINE B4 -40 125 16 6 1623 460 201 186 7 chr5 136183253 136183292 -16353967 - B4 SINE B4 -3 289 230 6 1623 919 201 16 72 chr5 136183292 136183485 -16353774 - B3A SINE B2 -16 182 1 6 1623 460 201 186 7 chr5 136183485 136183590 -16353669 - B4 SINE B4 -63 229 119 6 202 524 225 188 26 chr5 136183621 136183813 -16353446 - ID_B1 SINE B4 0 224 2 6 1624 288 167 51 154 chr5 136184296 136184374 -16352885 - B1F2 SINE Alu -31 118 49 6 1624 497 320 66 29 chr5 136184570 136184648 -16352611 - Cheshire DNA MER1_type -564 1856 1777 6 1624 181 0 69 0 chr5 136184648 136184677 -16352582 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1624 497 320 66 29 chr5 136184677 136184839 -16352420 - Cheshire DNA MER1_type -644 1776 1607 6 1624 917 136 7 54 chr5 136184856 136185004 -16352255 + B1_Mur3 SINE Alu 2 142 -7 6 1624 306 0 0 0 chr5 136185010 136185044 -16352215 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1624 1647 31 0 10 chr5 136185049 136185243 -16352016 + B2_Mm1a SINE B2 2 193 0 6 1624 270 0 0 0 chr5 136185392 136185422 -16351837 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 6 1624 271 263 137 29 chr5 136185573 136185675 -16351584 + PB1D7 SINE Alu 1 113 -7 6 1624 319 194 60 0 chr5 136185613 136185680 -16351579 + ID_B1 SINE B4 152 222 -2 6 1624 1164 260 101 32 chr5 136185750 136186127 -16351132 - MTD LTR MaLR -15 404 2 6 1624 323 233 51 39 chr5 136186430 136186586 -16350673 + L1MDa LINE L1 1546 1703 -4930 6 1624 587 226 16 16 chr5 136187116 136187242 -16350017 + B1_Mur4 SINE Alu 23 148 -2 6 1624 425 348 38 6 chr5 136187268 136187427 -16349832 - RSINE1 SINE B4 0 165 2 6 1624 218 275 105 42 chr5 136187430 136187525 -16349734 - B1_Mus2 SINE Alu -44 103 3 6 1624 227 263 12 62 chr5 136187448 136187529 -16349730 - MT2B2 LTR ERVL -345 239 163 6 1624 558 221 71 0 chr5 136187862 136187989 -16349270 - ID_B1 SINE B4 -7 217 82 6 1624 1256 219 83 9 chr5 136188049 136188385 -16348874 - MTEb LTR MaLR -1 378 18 6 1624 297 206 142 132 chr5 136188393 136188499 -16348760 + PB1D7 SINE Alu 5 111 -9 6 1624 266 260 113 10 chr5 136189095 136189192 -16348067 + ZP3AR Satellite Satellite 42 148 -64 6 1624 381 216 14 0 chr5 136189193 136189267 -16347992 + ID4 SINE ID 2 76 -7 6 1624 290 366 100 43 chr5 136189651 136189882 -16347377 - MER77 LTR ERVL -13 594 351 6 1624 290 315 65 0 chr5 136189935 136190043 -16347216 + Tigger5 DNA MER2_type 2217 2331 -75 6 1624 519 271 125 0 chr5 136190233 136190377 -16346882 - RSINE1 SINE B4 0 165 4 6 1624 2059 207 63 112 chr5 136190894 136191344 -16345915 - RLTR18B LTR ERVK 0 512 98 6 1624 324 0 0 0 chr5 136191344 136191380 -16345879 + (CA)n Simple_repeat Simple_repeat 2 37 0 6 1624 2059 207 63 112 chr5 136191380 136191467 -16345792 - RLTR18B LTR ERVK -415 97 3 6 1624 292 256 100 0 chr5 136192502 136192592 -16344667 + ID_B1 SINE B4 102 200 -24 6 1624 681 24 0 0 chr5 136192614 136192697 -16344562 + (GA)n Simple_repeat Simple_repeat 1 83 0 6 1624 782 128 15 29 chr5 136192714 136192851 -16344408 + B1_Mur4 SINE Alu 11 145 -5 6 1624 212 263 172 0 chr5 136193317 136193416 -16343843 + PB1D10 SINE Alu 2 117 0 6 1624 694 226 22 0 chr5 136193418 136193555 -16343704 + RSINE1 SINE B4 3 142 -23 6 1624 210 118 0 0 chr5 136193566 136193600 -16343659 + (TC)n Simple_repeat Simple_repeat 1 34 0 6 1624 180 0 0 0 chr5 136193623 136193643 -16343616 + (CA)n Simple_repeat Simple_repeat 1 20 0 6 1624 468 211 42 0 chr5 136193678 136193773 -16343486 + ID_B1 SINE B4 94 192 -32 6 1624 1190 55 7 0 chr5 136193805 136193951 -16343308 + B1_Mus2 SINE Alu 1 147 0 6 1624 294 98 0 0 chr5 136193958 136194009 -16343250 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 6 1624 266 287 65 73 chr5 136194421 136194469 -16342790 + B1_Mur1 SINE Alu 20 142 -7 6 1624 297 214 0 79 chr5 136194469 136194545 -16342714 + ID_B1 SINE B4 148 217 -7 6 1624 290 260 0 14 chr5 136194551 136194625 -16342634 + ID_B1 SINE B4 84 156 -68 6 1624 276 211 0 0 chr5 136194625 136194677 -16342582 + PB1D9 SINE Alu 2 53 -67 6 1624 34 0 0 0 chr5 136194819 136194853 -16342406 + AT_rich Low_complexity Low_complexity 1 34 0 6 1624 460 233 48 0 chr5 136194853 136194956 -16342303 - PB1D9 SINE Alu 0 120 13 7 1624 641 173 99 63 chr5 136194996 136195138 -16342121 - B1_Mur3 SINE Alu 0 149 3 7 1624 189 0 0 0 chr5 136195252 136195273 -16341986 + (TG)n Simple_repeat Simple_repeat 2 22 0 7 1624 455 373 20 0 chr5 136195298 136195448 -16341811 - RSINE1 SINE B4 0 165 13 7 1624 538 271 104 61 chr5 136195460 136195672 -16341587 - ID_B1 SINE B4 -3 221 1 7 1624 226 341 11 11 chr5 136196942 136197031 -16340228 + B4A SINE B4 28 116 -176 7 1624 379 263 0 0 chr5 136197041 136197117 -16340142 - RSINE1 SINE B4 -40 125 50 7 1624 1135 89 7 0 chr5 136197355 136197501 -16339758 - B1_Mm SINE Alu 0 147 1 7 1624 1090 29 59 0 chr5 136197556 136197692 -16339567 + B1_Mm SINE Alu 1 144 -3 7 1624 279 0 0 0 chr5 136197692 136197723 -16339536 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 7 1624 478 253 9 48 chr5 136197854 136198007 -16339252 - RSINE1 SINE B4 -148 144 1 7 1624 720 167 317 12 chr5 136198544 136198708 -16338551 + B3 SINE B2 3 216 0 7 1624 292 189 0 53 chr5 136198733 136198777 -16338482 + polypurine Low_complexity Low_complexity 2 43 0 7 1624 583 187 6 152 chr5 136198777 136198941 -16338318 + B1_Mus2 SINE Alu 3 142 -5 7 1624 292 189 0 53 chr5 136198941 136198991 -16338268 + polypurine Low_complexity Low_complexity 44 91 0 7 1624 655 205 127 24 chr5 136199257 136199422 -16337837 - MTC LTR MaLR 0 421 240 7 1624 1661 186 76 52 chr5 136199432 136199813 -16337446 - RLTR18B LTR ERVK -16 496 107 7 1624 1249 145 74 17 chr5 136199817 136200048 -16337211 - MTC LTR MaLR -176 245 2 7 1624 479 238 164 28 chr5 136200086 136200263 -16336996 - ID_B1 SINE B4 -20 204 4 7 1624 206 32 0 31 chr5 136200279 136200311 -16336948 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1624 392 204 112 0 chr5 136200314 136200412 -16336847 - PB1D10 SINE Alu 0 117 9 7 1624 341 137 258 51 chr5 136200423 136200545 -16336714 - Lx4B LINE L1 -8 7050 6901 7 1624 835 225 76 13 chr5 136202280 136202505 -16334754 + B4 SINE B4 3 241 -51 7 1624 231 36 0 0 chr5 136202507 136202535 -16334724 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1624 800 109 35 55 chr5 136203649 136203794 -16333465 - B1_Mus1 SINE Alu 0 148 7 7 1624 243 254 80 53 chr5 136204732 136204807 -16332452 + MER2B DNA MER2_type 258 334 -2 7 1624 1093 97 121 0 chr5 136204863 136205028 -16332231 - B2_Mm2 SINE B2 -9 186 2 7 1624 304 294 12 0 chr5 136207735 136207820 -16329439 + ID_B1 SINE B4 6 91 -133 7 1624 794 156 96 0 chr5 136213471 136213606 -16323653 - B1_Mus1 SINE Alu 0 148 1 7 1624 291 53 0 0 chr5 136213632 136213670 -16323589 - B1_Mus1 SINE Alu -110 38 1 7 1624 406 151 93 0 chr5 136213829 136213915 -16323344 + PB1D7 SINE Alu 19 112 -8 7 1624 1571 181 92 27 chr5 136214157 136214527 -16322732 - MTC LTR MaLR -22 399 6 7 1624 555 224 62 17 chr5 136214526 136214703 -16322556 - MTC-int LTR MaLR -4 1254 1070 7 1624 654 114 0 121 chr5 136214709 136214844 -16322415 + B1_Mus2 SINE Alu 5 123 -24 7 1624 1161 68 7 0 chr5 136214844 136214990 -16322269 + B1_Mus1 SINE Alu 2 148 0 7 1624 3709 206 142 15 chr5 136215001 136215032 -16322227 - MTC-int LTR MaLR -102 1156 1125 7 1624 1494 68 5 15 chr5 136215032 136215227 -16322032 + B2_Mm1t SINE B2 1 193 0 7 1624 3709 206 142 15 chr5 136215227 136215915 -16321344 - MTC-int LTR MaLR -134 1124 338 7 1624 1005 67 96 0 chr5 136215915 136216050 -16321209 - B1_Mus1 SINE Alu 0 148 1 7 1624 1408 68 16 0 chr5 136216057 136216247 -16321012 - B2_Mm1a SINE B2 0 193 1 7 1624 970 123 13 27 chr5 136216255 136216405 -16320854 - B1_Mur4 SINE Alu 0 150 3 7 1624 3709 206 142 15 chr5 136216405 136216692 -16320567 - MTC-int LTR MaLR -950 308 4 7 1624 2164 129 98 23 chr5 136216694 136217083 -16320176 - MTC LTR MaLR -3 418 1 7 1624 1014 211 65 10 chr5 136217189 136217390 -16319869 - B3 SINE B2 -4 212 1 7 1624 216 0 0 0 chr5 136217420 136217444 -16319815 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1624 441 264 7 194 chr5 136217444 136217599 -16319660 - B1F SINE Alu -2 147 13 7 1624 965 148 231 21 chr5 136218508 136218694 -16318565 - URR1B DNA MER1_type 0 225 1 7 1624 448 190 20 10 chr5 136220335 136220436 -16316823 - PB1D9 SINE Alu -8 112 11 7 1624 211 254 0 45 chr5 136220634 136220700 -16316559 + ID SINE ID 22 84 -140 7 1624 985 76 0 51 chr5 136220712 136220850 -16316409 + B1_Mus1 SINE Alu 2 132 -16 7 1624 338 296 0 0 chr5 136220890 136220971 -16316288 + ID_B1 SINE B4 83 163 -61 7 1624 596 289 7 0 chr5 136221092 136221234 -16316025 + RSINE1 SINE B4 4 146 -19 7 1624 949 192 22 11 chr5 136221252 136221436 -16315823 + B3 SINE B2 4 189 -27 7 1624 712 226 221 0 chr5 136221518 136221699 -16315560 + ID_B1 SINE B4 1 221 -3 7 1624 971 219 35 10 chr5 136222249 136222452 -16314807 + B3 SINE B2 6 213 -3 7 1624 679 252 77 10 chr5 136222503 136222711 -16314548 + ID_B1 SINE B4 2 223 -1 7 1624 887 194 18 0 chr5 136222770 136222935 -16314324 + URR1B DNA MER1_type 1 168 -57 7 1624 456 238 24 59 chr5 136223221 136223391 -16313868 + RNLTR23 LTR ERVK 479 642 0 7 1624 426 50 50 0 chr5 136223391 136223451 -16313808 + URR1B DNA MER1_type 163 225 0 7 1624 808 264 21 0 chr5 136223902 136224095 -16313164 + B4 SINE B4 1 197 -95 7 1624 741 93 0 0 chr5 136224101 136224208 -16313051 + (GAAAA)n Simple_repeat Simple_repeat 1 107 0 7 1624 183 222 0 0 chr5 136224221 136224266 -16312993 + GA-rich Low_complexity Low_complexity 1 45 0 7 1624 304 286 89 0 chr5 136224276 136224388 -16312871 + RSINE1 SINE B4 42 163 -2 7 1624 742 230 42 0 chr5 136224806 136224971 -16312288 + B3A SINE B2 4 175 -23 7 1624 243 0 0 0 chr5 136224975 136225002 -16312257 + (CA)n Simple_repeat Simple_repeat 1 27 0 7 1624 396 103 0 0 chr5 136225090 136225148 -16312111 + (GGA)n Simple_repeat Simple_repeat 2 59 0 7 1624 557 244 96 28 chr5 136225178 136225355 -16311904 + B3A SINE B2 2 190 -8 7 1624 755 149 0 14 chr5 136225371 136225383 -16311876 + polypurine Low_complexity Low_complexity 3 14 0 7 1624 914 148 7 13 chr5 136225383 136225534 -16311725 + B1_Mur4 SINE Alu 1 150 0 7 1624 755 149 0 14 chr5 136225534 136225664 -16311595 + GA-rich Low_complexity Low_complexity 15 142 0 7 1624 378 107 0 0 chr5 136225674 136225730 -16311529 + (GGGA)n Simple_repeat Simple_repeat 2 57 0 7 1624 345 171 96 64 chr5 136226184 136226278 -16310981 + B1F SINE Alu 27 123 -26 7 1624 664 216 132 0 chr5 136226407 136226597 -16310662 + B3 SINE B2 1 215 -1 7 1624 955 144 0 0 chr5 136226599 136226738 -16310521 + B1_Mus1 SINE Alu 1 139 -9 7 1624 281 295 20 31 chr5 136226835 136226933 -16310326 - RSINE1 SINE B4 -47 118 22 7 1624 2618 21 27 0 chr5 136227199 136227531 -16309728 + ORR1A1 LTR MaLR 1 341 -5 7 1624 262 274 0 52 chr5 136227797 136227874 -16309385 - BC1_Mm scRNA scRNA -61 91 19 7 1624 432 227 133 14 chr5 136227870 136228013 -16309246 - ZP3AR Satellite Satellite -6 206 47 7 1624 487 86 37 0 chr5 136228185 136228266 -16308993 + (GGGA)n Simple_repeat Simple_repeat 2 85 0 7 1624 1483 218 32 43 chr5 136228420 136228765 -16308494 + MTE2a LTR MaLR 36 376 -3 7 1624 234 279 281 22 chr5 136228764 136228903 -16308356 + B3A SINE B2 2 176 -22 7 1624 1184 54 0 0 chr5 136228998 136229145 -16308114 + B1_Mus1 SINE Alu 1 147 -1 7 1624 877 161 0 26 chr5 136229474 136229627 -16307632 - B1_Mur3 SINE Alu 0 149 1 7 1624 213 324 47 47 chr5 136229886 136229993 -16307266 + PB1D10 SINE Alu 6 112 -5 7 1624 1607 44 42 0 chr5 136230007 136230580 -16306679 + ZP3AR Satellite Satellite 1 596 -53 7 1624 358 228 16 168 chr5 136231393 136231583 -16305676 + RMER15 LTR ERVL 1 161 -414 7 1624 755 253 128 29 chr5 136231578 136231851 -16305408 + RMER15 LTR ERVL 276 575 0 7 1624 591 15 0 0 chr5 136231874 136231942 -16305317 + (TAGTG)n Simple_repeat Simple_repeat 5 72 0 7 1624 948 262 94 0 chr5 136232029 136232296 -16304963 + B4 SINE B4 1 292 0 7 1624 318 262 87 10 chr5 136232330 136232434 -16304825 + ZP3AR Satellite Satellite 24 135 -77 7 1624 589 328 78 12 chr5 136232546 136232593 -16304666 + B4A SINE B4 25 84 -208 7 1624 288 0 0 0 chr5 136232593 136232625 -16304634 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1624 589 328 78 12 chr5 136232625 136232821 -16304438 + B4A SINE B4 85 283 -9 7 1624 346 100 83 0 chr5 136233333 136233393 -16303866 + RSINE1 SINE B4 32 96 -69 7 1624 261 119 0 0 chr5 136233403 136233445 -16303814 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1624 548 295 65 34 chr5 136233518 136233809 -16303450 - ORR1E LTR MaLR -52 307 8 7 1624 2410 83 6 0 chr5 136233892 136234217 -16303042 + ORR1A2 LTR MaLR 1 327 0 7 1624 2990 60 14 43 chr5 136234222 136234446 -16302813 - MTB_Mm LTR MaLR 0 407 197 7 1624 1434 48 27 0 chr5 136234446 136234634 -16302625 - B2_Mm1a SINE B2 0 193 1 7 1624 2990 60 14 43 chr5 136234634 136234828 -16302431 - MTB_Mm LTR MaLR -211 196 1 7 1624 640 236 144 0 chr5 136235323 136235497 -16301762 - B3 SINE B2 -14 202 4 7 1624 304 271 262 12 chr5 136235509 136235681 -16301578 - B3 SINE B2 -1 215 1 7 1624 262 22 0 82 chr5 136235908 136235957 -16301302 + (GTTTG)n Simple_repeat Simple_repeat 2 46 0 7 1624 782 193 0 0 chr5 136235957 136236097 -16301162 - B1_Mus1 SINE Alu -8 140 1 7 1624 267 347 0 65 chr5 136236149 136236257 -16301002 - RSINE1 SINE B4 0 165 65 7 1624 356 252 55 41 chr5 136236304 136236449 -16300810 - B1F SINE Alu 0 149 3 7 1624 678 25 0 0 chr5 136236669 136236749 -16300510 + (TG)n Simple_repeat Simple_repeat 1 80 0 7 1624 260 196 20 0 chr5 136236750 136236801 -16300458 - RSINE1 SINE B4 -57 108 57 7 1624 683 235 22 66 chr5 136236866 136237048 -16300211 + MTEa LTR MaLR 5 178 -201 7 1624 318 227 57 0 chr5 136237074 136237162 -16300097 + MTEa LTR MaLR 278 370 0 7 1624 603 256 101 5 chr5 136237283 136237491 -16299768 + B4 SINE B4 1 228 -64 7 1624 284 233 0 0 chr5 136238151 136238211 -16299048 + PB1D7 SINE Alu 1 60 -60 7 1624 186 43 0 0 chr5 136238327 136238350 -16298909 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1624 632 239 0 36 chr5 136238350 136238489 -16298770 - B1_Mur1 SINE Alu -9 140 7 8 1624 412 268 236 0 chr5 136238668 136238791 -16298468 - RSINE1 SINE B4 -2 163 12 8 1624 510 203 114 0 chr5 136238845 136238968 -16298291 + ID_B1 SINE B4 84 220 -4 8 1624 478 193 0 0 chr5 136238973 136239056 -16298203 + RSINE1 SINE B4 6 88 -77 8 1624 283 241 156 78 chr5 136239107 136239287 -16297972 - B3A SINE B2 -3 195 2 8 1624 650 210 188 0 chr5 136239317 136239498 -16297761 + ID_B1 SINE B4 2 216 -8 8 1624 748 279 0 0 chr5 136239774 136239939 -16297320 - RSINE1 SINE B4 0 165 1 8 1624 222 236 0 127 chr5 136239953 136240016 -16297243 - ID4 SINE ID -24 59 5 8 1624 729 183 0 22 chr5 136240026 136240160 -16297099 - B1_Mur3 SINE Alu -1 148 18 8 1624 603 102 0 0 chr5 136240160 136240248 -16297011 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 8 1624 551 248 127 89 chr5 136240263 136240412 -16296847 - ID_B1 SINE B4 -2 222 61 8 1624 478 0 32 0 chr5 136240412 136240474 -16296785 + (TTTTG)n Simple_repeat Simple_repeat 2 65 0 8 1624 1157 29 0 0 chr5 136240474 136240611 -16296648 - B1_Mus2 SINE Alu -10 137 1 8 1624 551 248 127 89 chr5 136240611 136240673 -16296586 - ID SINE ID -164 60 3 8 1624 213 200 97 32 chr5 136240682 136240744 -16296515 - PB1D9 SINE Alu -1 119 54 8 1624 264 59 0 0 chr5 136240933 136240967 -16296292 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1624 1098 214 51 31 chr5 136241004 136241260 -16295999 + B4 SINE B4 32 292 0 8 1624 253 100 20 20 chr5 136241525 136241576 -16295683 + (TCC)n Simple_repeat Simple_repeat 1 51 0 8 1624 260 308 63 36 chr5 136242058 136242092 -16295167 - MTEa LTR MaLR -21 358 324 8 1624 681 13 0 0 chr5 136242092 136242170 -16295089 + (GGAA)n Simple_repeat Simple_repeat 1 78 0 8 1624 260 238 32 28 chr5 136242170 136242273 -16294986 - MTEa LTR MaLR -56 323 171 8 1624 801 120 8 0 chr5 136242291 136242424 -16294835 - B1_Mur4 SINE Alu -10 140 7 8 1624 593 267 48 0 chr5 136242436 136242601 -16294658 - MTEa LTR MaLR -204 175 3 8 1624 958 289 76 70 chr5 136242782 136243139 -16294120 + ORR1E LTR MaLR 1 359 0 8 1624 228 326 0 15 chr5 136243158 136243289 -16293970 + (GGGTG)n Simple_repeat Simple_repeat 3 131 0 8 1624 346 151 13 27 chr5 136243658 136243733 -16293526 + PB1D10 SINE Alu 44 117 0 8 1624 386 224 53 0 chr5 136243737 136243813 -16293446 + RSINE1 SINE B4 3 82 -83 8 1624 545 254 46 51 chr5 136243921 136244116 -16293143 + B3A SINE B2 2 195 -3 8 1624 357 24 0 0 chr5 136244282 136244324 -16292935 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1624 1333 80 32 0 chr5 136244883 136245071 -16292188 + B2_Mm2 SINE B2 1 194 -1 8 1624 385 183 122 0 chr5 136245237 136245319 -16291940 - RSINE1 SINE B4 -62 103 12 8 1624 759 163 0 37 chr5 136245329 136245463 -16291796 - B1_Mus1 SINE Alu -9 139 11 8 1624 278 196 20 0 chr5 136245479 136245530 -16291729 - B1F SINE Alu -1 148 97 8 1624 415 250 77 42 chr5 136245686 136245931 -16291328 - B4A SINE B4 -5 287 3 8 1624 264 220 0 0 chr5 136246331 136246381 -16290878 + ID SINE ID 2 51 -173 8 1624 248 208 94 0 chr5 136246529 136246582 -16290677 - ID4_ SINE ID -13 70 13 8 1624 358 311 100 13 chr5 136246759 136246909 -16290350 + RSINE1 SINE B4 3 165 0 8 1624 631 283 77 20 chr5 136246939 136247134 -16290125 - B3 SINE B2 -10 206 1 8 1624 337 283 210 17 chr5 136247143 136247319 -16289940 + B3 SINE B2 1 210 -6 8 1624 1222 84 45 0 chr5 136247330 136247509 -16289750 - B2_Mm2 SINE B2 -7 188 2 8 1624 901 211 35 0 chr5 136248019 136248218 -16289041 + B3 SINE B2 4 209 -7 8 1624 261 0 0 0 chr5 136248638 136248667 -16288592 + (A)n Simple_repeat Simple_repeat 1 29 0 8 1624 446 226 21 0 chr5 136248752 136248845 -16288414 + RSINE1 SINE B4 11 105 -60 8 1624 321 339 40 73 chr5 136249164 136249412 -16287847 - RLTR40 LTR ERVK -509 308 69 8 1624 21 36 0 0 chr5 136249544 136249572 -16287687 + AT_rich Low_complexity Low_complexity 1 28 0 8 1624 1137 55 14 0 chr5 136249576 136249722 -16287537 + B1_Mus1 SINE Alu 1 148 0 8 1624 682 128 0 0 chr5 136249760 136249862 -16287397 + B3 SINE B2 6 107 -109 8 1624 229 281 30 110 chr5 136250325 136250425 -16286834 - ID_B1 SINE B4 -59 165 74 8 1624 981 208 131 6 chr5 136250435 136250747 -16286512 + MTD LTR MaLR 1 409 -10 8 1624 321 177 17 17 chr5 136250765 136250831 -16286428 - ID4_ SINE ID -15 68 3 8 1624 461 198 123 0 chr5 136251056 136251162 -16286097 - PB1D9 SINE Alu -1 119 1 8 1624 608 271 32 32 chr5 136251175 136251362 -16285897 - B3A SINE B2 0 198 12 8 1624 885 185 77 39 chr5 136251386 136251594 -16285665 - ID_B1 SINE B4 -8 216 1 8 1624 775 253 55 5 chr5 136252014 136252213 -16285046 + ID_B1 SINE B4 15 223 -1 8 1624 735 141 62 0 chr5 136252228 136252356 -16284903 + B1_Mus1 SINE Alu 13 148 0 8 1624 211 228 140 0 chr5 136252580 136252637 -16284622 - RSINE1 SINE B4 -87 78 14 8 1624 228 258 0 29 chr5 136253024 136253092 -16284167 - PB1D10 SINE Alu -35 82 17 8 1624 258 233 51 8 chr5 136253246 136253324 -16283935 - B1F SINE Alu 0 120 33 8 1624 489 254 94 17 chr5 136253405 136253585 -16283674 - B3A SINE B2 -3 195 2 8 1624 385 149 95 0 chr5 136255111 136255185 -16282074 - B1_Mur2 SINE Alu -56 93 13 8 1624 992 115 168 55 chr5 136255284 136255486 -16281773 + URR1A DNA MER1_type 2 226 0 8 1624 261 0 0 0 chr5 136255494 136255523 -16281736 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 8 1624 613 191 179 0 chr5 136255958 136256120 -16281139 + B3A SINE B2 1 191 -7 8 1624 315 306 130 0 chr5 136256140 136256248 -16281011 + PB1 SINE Alu 3 124 -3 8 1624 413 301 66 40 chr5 136256539 136256691 -16280568 - RSINE1 SINE B4 -1 164 9 8 1624 541 229 8 8 chr5 136257067 136257199 -16280060 + ZP3AR Satellite Satellite 46 177 -35 8 1624 346 300 163 38 chr5 136257698 136257759 -16279500 - ID_B1 SINE B4 -21 271 159 8 1624 361 271 42 0 chr5 136257759 136257855 -16279404 - PB1D10 SINE Alu -7 110 11 8 1624 346 300 163 38 chr5 136257855 136257937 -16279322 - ID_B1 SINE B4 -21 158 3 8 1624 583 189 28 66 chr5 136258087 136258288 -16278971 + B3A SINE B2 1 186 -9 8 1624 290 241 115 9 chr5 136258284 136258397 -16278862 + MER2 DNA MER2_type 75 199 -146 8 1624 412 312 24 0 chr5 136258429 136258554 -16278705 - RSINE1 SINE B4 -35 130 3 8 1624 394 215 13 0 chr5 136258591 136258670 -16278589 + ID2 SINE ID 1 80 -3 8 1624 391 285 97 30 chr5 136259542 136259676 -16277583 + RSINE1 SINE B4 22 164 -1 8 1624 443 189 22 22 chr5 136259721 136259813 -16277446 + PB1D10 SINE Alu 22 113 -4 8 1624 236 232 18 0 chr5 136259812 136259868 -16277391 + tRNA-Ala-GCY_ tRNA tRNA 11 67 -8 8 1624 436 271 31 12 chr5 136260153 136260314 -16276945 + B3A SINE B2 2 165 -33 8 1624 337 291 0 0 chr5 136260505 136260584 -16276675 + RSINE1 SINE B4 3 81 -84 8 1624 541 266 73 29 chr5 136260636 136260841 -16276418 - RLTR18-int LTR ERVK -5145 216 3 8 1624 2247 153 104 120 chr5 136260871 136261019 -16276240 - RLTR18 LTR ERVK -4 612 469 8 1624 768 159 0 40 chr5 136261019 136261170 -16276089 + B1_Mus2 SINE Alu 1 145 -2 8 1624 2247 153 104 120 chr5 136261170 136261629 -16275630 - RLTR18 LTR ERVK -148 468 15 8 1624 260 238 11 130 chr5 136261629 136261721 -16275538 + RSINE1 SINE B4 75 155 -10 8 1624 1686 112 90 23 chr5 136262942 136263243 -16274016 - ORR1A4 LTR MaLR -8 321 1 8 1624 410 318 6 38 chr5 136263718 136263875 -16273384 + ID_B1 SINE B4 71 222 -2 8 1624 912 220 120 41 chr5 136264283 136264549 -16272710 + B4A SINE B4 6 292 0 8 1624 241 204 40 111 chr5 136264573 136264672 -16272587 + PB1 SINE Alu 32 123 -4 8 1624 355 204 118 0 chr5 136264583 136264676 -16272583 + ID_B1 SINE B4 121 224 0 8 1624 1177 54 0 0 chr5 136264685 136264832 -16272427 + B1_Mus2 SINE Alu 1 147 0 8 1624 269 242 40 81 chr5 136265811 136265910 -16271349 + ZP3AR Satellite Satellite 44 138 -74 8 1624 559 232 58 0 chr5 136266315 136266453 -16270806 + B1_Mur1 SINE Alu 2 147 -2 8 1624 302 219 90 75 chr5 136266524 136266657 -16270602 + PB1D10 SINE Alu 7 141 -8 8 1624 254 277 0 30 chr5 136266761 136266828 -16270431 + MTC LTR MaLR 13 77 -344 8 1624 333 262 24 32 chr5 136267050 136267176 -16270083 - RLTR16 LTR ERVK -357 148 24 8 1624 499 325 41 5 chr5 136267139 136267319 -16269940 + MTD LTR MaLR 25 211 -208 8 1624 475 277 95 0 chr5 136267319 136267456 -16269803 + B3A SINE B2 1 150 -48 8 1624 621 161 146 0 chr5 136267497 136267627 -16269632 + B1_Mur2 SINE Alu 1 149 0 8 1624 261 221 88 0 chr5 136267647 136267715 -16269544 - MERVL_2A-int LTR ERVL -1128 4633 4560 8 1624 475 232 39 16 chr5 136267721 136267848 -16269411 + MTD LTR MaLR 276 405 -14 8 1624 694 104 0 0 chr5 136268147 136268253 -16269006 + B2_Mm2 SINE B2 2 107 -88 8 1624 1049 67 40 0 chr5 136268532 136268681 -16268578 + B2_Mm1t SINE B2 24 178 -15 8 1624 263 170 0 36 chr5 136268730 136268785 -16268474 + B2_Mm2 SINE B2 49 101 -94 8 1624 645 128 46 0 chr5 136268867 136268976 -16268283 + B1_Mus2 SINE Alu 24 137 -10 8 1624 328 241 42 59 chr5 136268869 136268988 -16268271 + ID_B1 SINE B4 107 223 -1 8 1624 493 255 26 46 chr5 136269554 136269706 -16267553 + B4 SINE B4 142 290 -2 8 1624 586 232 96 66 chr5 136270025 136270223 -16267036 + B4A SINE B4 5 208 -84 8 1624 400 297 149 0 chr5 136271085 136271233 -16266026 + B3 SINE B2 26 195 -21 8 1624 1057 117 45 32 chr5 136271232 136271447 -16265812 + B2_Mm2 SINE B2 9 215 -1 9 1624 468 0 0 0 chr5 136271458 136271510 -16265749 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 1624 2928 67 10 22 chr5 136271867 136272279 -16264980 - MTB_Mm LTR MaLR 0 407 1 9 1624 777 216 10 54 chr5 136272295 136272500 -16264759 - B3A SINE B2 0 198 3 9 1624 386 267 89 0 chr5 136272521 136272622 -16264637 - PB1D10 SINE Alu -7 110 1 9 1624 1058 175 55 0 chr5 136272649 136272849 -16264410 - B3 SINE B2 -4 212 2 9 1624 895 42 8 0 chr5 136273056 136273176 -16264083 - B1_Mus1 SINE Alu 0 148 28 9 1624 1114 281 98 3 chr5 136273199 136273545 -16263714 + MTEa LTR MaLR 1 379 0 9 1624 966 262 121 47 chr5 136273639 136273782 -16263477 + RMER5 LTR ERV1 50 206 -328 9 1624 1201 96 11 6 chr5 136273782 136273960 -16263299 + B2_Mm1t SINE B2 1 179 -14 9 1624 959 117 23 0 chr5 136273964 136274135 -16263124 + (GGAA)n Simple_repeat Simple_repeat 3 177 0 9 1624 966 262 121 47 chr5 136274135 136274415 -16262844 + RMER5 LTR ERV1 207 510 -24 9 1624 514 240 88 14 chr5 136274415 136274563 -16262696 - B3 SINE B2 0 216 58 9 1624 1251 62 0 17 chr5 136274853 136275034 -16262225 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 9 1624 360 0 0 0 chr5 136275034 136275074 -16262185 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1624 625 152 41 6 chr5 136275114 136275286 -16261973 + (CA)n Simple_repeat Simple_repeat 2 179 0 9 1624 426 214 87 0 chr5 136275418 136275521 -16261738 - BC1_Mm scRNA scRNA -28 124 13 9 1624 630 225 8 9 chr5 136275555 136275705 -16261554 - B1_Mur2 SINE Alu -7 142 2 9 1624 563 232 44 89 chr5 136275711 136275730 -16261529 - B2_Mm2 SINE B2 -1 194 176 9 1624 279 79 0 0 chr5 136275730 136275768 -16261491 + (TTA)n Simple_repeat Simple_repeat 2 39 0 9 1624 820 198 19 22 chr5 136275768 136275951 -16261308 - B3A SINE B2 -20 175 1 9 1624 190 328 52 0 chr5 136276028 136276086 -16261173 - MIRm SINE MIR -173 103 43 9 1624 369 0 0 0 chr5 136276267 136276308 -16260951 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1624 290 196 11 0 chr5 136276490 136276582 -16260677 + (TG)n Simple_repeat Simple_repeat 2 94 0 9 1624 198 143 15 31 chr5 136277163 136277228 -16260031 + (TG)n Simple_repeat Simple_repeat 1 64 0 9 1624 419 244 15 66 chr5 136277323 136277459 -16259800 + ID_B1 SINE B4 16 144 -80 9 1624 469 307 39 20 chr5 136277620 136277773 -16259486 + B4A SINE B4 1 156 -136 9 1624 270 255 154 23 chr5 136277817 136277909 -16259350 + B3A SINE B2 8 112 -86 9 1624 366 23 0 0 chr5 136277915 136277958 -16259301 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1624 312 239 171 81 chr5 136278185 136278308 -16258951 + RSINE1 SINE B4 3 136 -29 9 1624 346 202 195 31 chr5 136279155 136279283 -16257976 - B2_Mm2 SINE B2 -36 159 11 9 1624 909 218 168 4 chr5 136279303 136279547 -16257712 - B4A SINE B4 -8 284 1 9 1624 407 285 34 34 chr5 136279645 136279794 -16257465 - B1F SINE Alu 0 149 1 9 1624 307 288 90 0 chr5 136279872 136279983 -16257276 + L1MC3 LINE L1 6524 6644 -1141 9 1624 303 261 54 11 chr5 136279983 136280076 -16257183 - RSINE1 SINE B4 -8 157 61 9 1624 359 17 67 0 chr5 136280943 136281003 -16256256 + (CA)n Simple_repeat Simple_repeat 2 65 0 9 1624 663 13 0 0 chr5 136281152 136281228 -16256031 + (TC)n Simple_repeat Simple_repeat 1 76 0 9 1624 423 0 0 0 chr5 136281228 136281275 -16255984 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1624 773 189 43 7 chr5 136281358 136281497 -16255762 + B1_Mur1 SINE Alu 1 144 -5 9 1624 357 24 0 0 chr5 136281503 136281545 -16255714 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 9 1624 486 268 24 0 chr5 136281551 136281678 -16255581 - B3 SINE B2 -85 131 2 9 1624 395 228 58 29 chr5 136282067 136282161 -16255098 + PB1D10 SINE Alu 22 120 -29 9 1624 638 226 184 21 chr5 136282161 136282351 -16254908 + ID_B1 SINE B4 4 224 0 9 1624 213 311 161 26 chr5 136284102 136284257 -16253002 + MIRb SINE MIR 13 188 -80 9 1624 540 276 8 0 chr5 136284358 136284481 -16252778 + RSINE1 SINE B4 4 127 -38 9 1624 1006 118 0 0 chr5 136284533 136284668 -16252591 + B1_Mus1 SINE Alu 1 135 -13 9 1624 209 247 14 83 chr5 136285162 136285259 -16252000 - MIR SINE MIR -119 149 59 9 1624 352 268 12 12 chr5 136285593 136285676 -16251583 - ID4_ SINE ID 0 83 1 9 1624 378 0 0 0 chr5 136285723 136285765 -16251494 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1624 893 125 0 7 chr5 136285791 136285928 -16251331 + B1_Mus1 SINE Alu 12 147 -1 9 1624 504 213 0 0 chr5 136286287 136286409 -16250850 + T-rich Low_complexity Low_complexity 1 122 0 9 1624 1131 82 7 0 chr5 136286411 136286557 -16250702 - B1_Mus1 SINE Alu 0 148 2 9 1624 440 308 20 7 chr5 136286588 136286735 -16250524 + B1F SINE Alu 1 149 0 9 1624 423 0 0 0 chr5 136286804 136286851 -16250408 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1624 973 298 76 0 chr5 136286864 136287126 -16250133 + B4A SINE B4 1 282 -10 9 1624 495 73 0 0 chr5 136287127 136287195 -16250064 + (CA)n Simple_repeat Simple_repeat 2 69 0 9 1624 381 254 51 87 chr5 136287625 136287763 -16249496 + B4A SINE B4 89 221 -71 9 1624 993 55 0 0 chr5 136287641 136287769 -16249490 + B1_Mm SINE Alu 20 147 0 9 1624 1325 170 13 5 chr5 136288056 136288280 -16248979 - URR1A DNA MER1_type 0 226 1 9 1624 421 297 40 13 chr5 136288301 136288450 -16248809 + B4A SINE B4 80 232 -60 9 1624 515 256 96 0 chr5 136288450 136288575 -16248684 + RSINE1 SINE B4 3 139 -26 9 1624 402 21 0 0 chr5 136288575 136288622 -16248637 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1624 334 205 28 33 chr5 136289452 136289543 -16247716 + ID2 SINE ID 7 88 -64 9 1624 799 184 14 7 chr5 136289565 136289713 -16247546 + B1_Mur2 SINE Alu 1 149 0 9 1624 1591 37 11 0 chr5 136289738 136289929 -16247330 + B2_Mm1t SINE B2 1 193 0 9 1624 557 246 24 0 chr5 136289944 136290070 -16247189 + B1F SINE Alu 20 148 -1 9 1624 927 99 14 0 chr5 136290275 136290416 -16246843 - B1_Mur4 SINE Alu -2 148 6 9 1624 407 259 43 104 chr5 136290416 136290435 -16246824 - B4 SINE B4 -63 225 76 9 1624 853 142 0 0 chr5 136290443 136290584 -16246675 + ZP3AR Satellite Satellite 45 185 -27 9 1624 229 328 16 0 chr5 136290590 136290654 -16246605 + ID4_ SINE ID 2 66 -17 9 1624 369 0 0 0 chr5 136290661 136290702 -16246557 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1624 566 204 0 98 chr5 136291375 136291392 -16245867 + ID_B1 SINE B4 78 224 0 9 1624 860 129 0 41 chr5 136291392 136291538 -16245721 + B1_Mur3 SINE Alu 10 149 0 9 1624 333 0 0 0 chr5 136291546 136291583 -16245676 + (TTA)n Simple_repeat Simple_repeat 1 37 0 9 1624 1208 134 0 69 chr5 136291968 136292066 -16245193 + URR1B DNA MER1_type 9 95 -130 9 1624 1324 94 61 0 chr5 136292066 136292247 -16245012 - B2_Mm2 SINE B2 -2 193 2 9 1624 1208 134 0 69 chr5 136292247 136292381 -16244878 + URR1B DNA MER1_type 96 225 0 9 1624 216 167 0 0 chr5 136292431 136292479 -16244780 + GA-rich Low_complexity Low_complexity 2 49 0 9 1624 664 255 92 96 chr5 136293029 136293311 -16243948 - B4 SINE B4 0 292 12 9 1624 245 188 14 28 chr5 136293324 136293395 -16243864 + T-rich Low_complexity Low_complexity 4 73 0 9 1624 581 265 7 0 chr5 136293535 136293671 -16243588 - ID_B1 SINE B4 0 224 88 9 1624 995 183 15 20 chr5 136293791 136293986 -16243273 - B2_Mm2 SINE B2 0 195 2 9 1624 223 277 0 0 chr5 136294802 136294867 -16242392 + G-rich Low_complexity Low_complexity 4 68 0 9 1624 267 247 169 0 chr5 136294969 136295046 -16242213 + PB1D10 SINE Alu 26 115 -2 9 1624 474 65 0 0 chr5 136295209 136295271 -16241988 + (TCC)n Simple_repeat Simple_repeat 3 64 0 9 1624 242 188 42 0 chr5 136295824 136295872 -16241387 - tRNA-Val-GTA tRNA tRNA -7 69 20 9 1624 277 300 14 0 chr5 136295879 136295949 -16241310 - ZP3AR Satellite Satellite -99 113 43 9 1624 595 224 59 15 chr5 136296615 136296751 -16240508 + RSINE1 SINE B4 2 143 -22 9 1624 29 0 0 0 chr5 136296889 136296918 -16240341 + AT_rich Low_complexity Low_complexity 1 29 0 9 1624 319 223 86 19 chr5 136296941 136297046 -16240213 + B1F SINE Alu 38 149 0 9 1624 863 241 128 30 chr5 136297074 136297339 -16239920 + B4 SINE B4 2 292 0 9 1624 901 136 0 33 chr5 136297528 136297680 -16239579 + B1_Mus1 SINE Alu 2 148 0 9 1624 210 219 0 0 chr5 136298091 136298132 -16239127 - ID_B1 SINE B4 -87 137 97 9 1624 203 241 35 0 chr5 136298857 136298915 -16238344 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 9 1624 276 258 145 117 chr5 136298946 136299091 -16238168 - B4 SINE B4 0 292 144 9 1624 257 68 23 0 chr5 136299118 136299162 -16238097 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 9 1624 844 149 43 0 chr5 136299162 136299303 -16237956 - B1_Mus1 SINE Alu 0 148 2 9 1624 447 247 89 119 chr5 136299330 136299532 -16237727 - B3A SINE B2 -2 196 1 9 1624 987 90 30 0 chr5 136299575 136299708 -16237551 - B1_Mur4 SINE Alu -13 137 1 9 1624 249 231 62 0 chr5 136299733 136299798 -16237461 - B4 SINE B4 -221 71 3 9 1624 423 0 0 0 chr5 136299798 136299845 -16237414 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 9 1624 707 231 43 49 chr5 136299957 136300121 -16237138 - RSINE1 SINE B4 0 165 3 9 1624 731 248 12 0 chr5 136300122 136300283 -16236976 - ID_B1 SINE B4 -60 164 2 9 1624 544 229 116 14 chr5 136300880 136301026 -16236233 - RSINE1 SINE B4 -2 163 3 9 1624 586 196 9 0 chr5 136301047 136301159 -16236100 - ID_B1 SINE B4 -1 223 111 1 1624 453 233 53 30 chr5 136301159 136301178 -16236081 - B1F1 SINE Alu 0 147 14 1 1624 314 253 38 0 chr5 136301259 136301338 -16235921 + PB1D10 SINE Alu 2 83 -34 1 1624 668 225 0 27 chr5 136301339 136301485 -16235774 + B1_Mur2 SINE Alu 1 142 -7 1 1624 728 259 92 0 chr5 136301488 136301555 -16235704 + ID SINE ID 3 86 -138 1 1624 412 279 73 0 chr5 136301555 136301691 -16235568 + B1F SINE Alu 3 148 -1 1 1624 549 255 88 20 chr5 136302532 136302680 -16234579 - ID_B1 SINE B4 0 224 67 1 1624 612 40 0 0 chr5 136302714 136302789 -16234470 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1624 528 174 33 28 chr5 136302819 136302950 -16234309 - B1F SINE Alu -13 136 8 1 1624 227 312 25 25 chr5 136302968 136303047 -16234212 - MIR SINE MIR -58 204 126 1 1624 257 261 45 129 chr5 136303054 136303186 -16234073 + B1F SINE Alu 20 140 -9 1 1624 795 19 0 0 chr5 136303187 136303293 -16233966 - B2_Mm1a SINE B2 0 193 88 1 1624 1465 67 0 6 chr5 136303307 136303487 -16233772 + B2_Mm2 SINE B2 1 179 -16 1 1624 198 103 0 0 chr5 136303487 136303516 -16233743 + (GA)n Simple_repeat Simple_repeat 1 29 0 1 1624 240 264 0 0 chr5 136303555 136303627 -16233632 + GA-rich Low_complexity Low_complexity 1 72 0 1 1624 493 191 257 33 chr5 136303700 136303852 -16233407 - MER53 DNA hAT -3 190 5 1 1624 447 387 73 19 chr5 136303955 136304379 -16232880 - L3 LINE CR1 -552 3937 3491 1 1624 247 208 13 89 chr5 136304419 136304498 -16232761 - MER46C DNA MER2_type -2 336 264 1 1624 327 211 28 14 chr5 136304498 136304570 -16232689 - ID4_ SINE ID -3 80 8 1 1624 1224 82 18 0 chr5 136304580 136304751 -16232508 - B2_Mm2 SINE B2 -7 188 15 1 1624 222 118 0 0 chr5 136304775 136304809 -16232450 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1624 206 128 0 25 chr5 136304889 136304929 -16232330 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1 1624 395 310 174 0 chr5 136304929 136305084 -16232175 - B4 SINE B4 -95 197 16 1 1624 391 229 86 103 chr5 136305100 136305183 -16232076 - PB1D10 SINE Alu -2 115 45 1 1624 366 61 0 0 chr5 136305183 136305232 -16232027 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1624 391 229 86 103 chr5 136305232 136305265 -16231994 - PB1D10 SINE Alu -73 44 3 1 1624 535 273 19 43 chr5 136305333 136305494 -16231765 - RSINE1 SINE B4 0 165 9 1 1624 285 231 15 15 chr5 136305650 136305716 -16231543 + ID_B1 SINE B4 144 209 -15 1 1624 469 284 36 36 chr5 136305744 136305883 -16231376 + B1F1 SINE Alu 1 139 -10 1 1624 197 359 16 0 chr5 136306135 136306199 -16231060 - L2c LINE L2 -251 3136 3072 1 1624 1368 113 2 0 chr5 136306294 136306606 -16230653 + ZP3AR Satellite Satellite 1 312 0 1 1624 346 222 14 0 chr5 136306606 136306678 -16230581 + ID4 SINE ID 1 73 -10 1 1624 470 282 42 7 chr5 136306997 136307140 -16230119 + B1F SINE Alu 1 148 -1 1 1624 347 127 16 0 chr5 136307472 136307535 -16229724 + (TG)n Simple_repeat Simple_repeat 1 64 0 1 1624 694 167 0 27 chr5 136307551 136307736 -16229523 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1624 1093 245 11 107 chr5 136307836 136307874 -16229385 - MTE2a LTR MaLR -9 370 337 1 1624 620 179 104 7 chr5 136307874 136308009 -16229250 + B1_Mur2 SINE Alu 2 149 0 1 1624 1093 251 17 91 chr5 136308009 136308414 -16228845 - MTE2a LTR MaLR -50 369 1 1 1624 248 282 24 0 chr5 136308481 136308566 -16228693 - MIRm SINE MIR -133 143 57 1 1624 372 214 0 0 chr5 136308611 136308681 -16228578 + ID SINE ID 2 71 -153 1 1624 306 0 0 0 chr5 136308865 136308899 -16228360 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1624 286 257 95 0 chr5 136309244 136309318 -16227941 + ID4 SINE ID 3 83 0 1 1624 1047 191 48 19 chr5 136309334 136309542 -16227717 + B3 SINE B2 2 215 -1 1 1624 838 179 14 20 chr5 136309576 136309724 -16227535 - B1_Mus1 SINE Alu 0 148 2 1 1624 334 233 68 0 chr5 136309746 136309819 -16227440 + ID4_ SINE ID 3 80 -3 1 1624 23 0 0 0 chr5 136309823 136309846 -16227413 + AT_rich Low_complexity Low_complexity 1 23 0 1 1624 863 128 7 7 chr5 136309855 136309997 -16227262 + B1_Mus2 SINE Alu 6 147 0 1 1624 495 278 18 90 chr5 136310071 136310152 -16227107 - RSINE1 SINE B4 -10 155 81 1 1624 912 35 58 12 chr5 136310152 136310324 -16226935 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1624 495 278 18 90 chr5 136310324 136310408 -16226851 - RSINE1 SINE B4 -85 80 2 1 1624 1048 208 13 35 chr5 136310433 136310662 -16226597 + ID_B1 SINE B4 1 224 0 1 1624 190 214 35 35 chr5 136312393 136312451 -16224808 + MIRb SINE MIR 118 175 -93 1 1624 192 125 0 0 chr5 136312597 136312629 -16224630 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1624 264 59 0 0 chr5 136312631 136312665 -16224594 + (CATG)n Simple_repeat Simple_repeat 3 36 0 1 1624 464 172 90 10 chr5 136312686 136312786 -16224473 - B1_Mur1 SINE Alu -40 109 2 1 1624 24 53 0 0 chr5 136312787 136312825 -16224434 + AT_rich Low_complexity Low_complexity 1 38 0 1 1624 441 350 0 0 chr5 136313033 136313153 -16224106 + ID_B1 SINE B4 104 223 -1 1 1624 702 125 8 32 chr5 136313162 136313277 -16223982 + B1_Mur4 SINE Alu 27 139 -11 1 1624 255 61 0 0 chr5 136313277 136313310 -16223949 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1624 410 252 96 72 chr5 136313311 136313455 -16223804 + B3A SINE B2 27 176 -22 1 1624 1602 38 5 0 chr5 136313455 136313640 -16223619 + B2_Mm1a SINE B2 2 187 -6 1 1624 410 252 96 72 chr5 136313640 136313662 -16223597 + B3A SINE B2 177 197 -1 1 1624 1515 48 21 11 chr5 136313674 136313865 -16223394 - B2_Mm2 SINE B2 -1 194 2 1 1624 1175 116 55 6 chr5 136313869 136314051 -16223208 - B2_Mm2 SINE B2 -3 192 2 1 1624 793 149 23 11 chr5 136314139 136314315 -16222944 + GA-rich Low_complexity Low_complexity 3 180 0 1 1624 292 312 0 0 chr5 136314556 136314636 -16222623 + ZP3AR Satellite Satellite 42 121 -91 1 1624 219 321 12 26 chr5 136314610 136314709 -16222550 + ID4 SINE ID 1 101 -51 1 25 797 164 0 0 chr5 136314756 136314884 -16222375 + B1_Mus1 SINE Alu 10 137 -11 1 1625 189 0 0 0 chr5 136314884 136314905 -16222354 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1 1625 827 19 0 0 chr5 136315111 136315217 -16222042 - L1Md_A LINE L1 -1 6581 6476 1 1625 360 236 109 8 chr5 136315336 136315464 -16221795 + B1F SINE Alu 4 144 -5 1 1625 909 220 9 99 chr5 136315471 136315703 -16221556 + B3 SINE B2 6 216 0 1 1625 1119 137 6 0 chr5 136315763 136315938 -16221321 + B2_Mm2 SINE B2 1 176 -19 1 1625 191 128 51 0 chr5 136315939 136315978 -16221281 + GA-rich Low_complexity Low_complexity 2 42 0 1 1625 278 269 0 25 chr5 136316009 136316089 -16221170 + G-rich Low_complexity Low_complexity 2 79 0 1 1625 203 333 24 73 chr5 136316544 136316667 -16220592 + MIR SINE MIR 28 144 -64 1 1625 1492 122 48 9 chr5 136316714 136317059 -16220200 + ZP3AR Satellite Satellite 1 358 -1 1 1625 254 186 0 167 chr5 136317376 136317395 -16219864 + PB1D10 SINE Alu 48 116 0 1 1625 283 213 0 47 chr5 136317395 136317459 -16219800 + ID_B1 SINE B4 164 224 0 1 1625 720 259 12 12 chr5 136317554 136317714 -16219545 - RSINE1 SINE B4 -3 162 3 1 1625 550 284 59 25 chr5 136317847 136318049 -16219210 + B3 SINE B2 5 213 -3 1 1625 848 177 14 21 chr5 136318076 136318220 -16219039 + B1_Mur4 SINE Alu 2 144 -6 1 1625 567 107 0 0 chr5 136318220 136318304 -16218955 + (GA)n Simple_repeat Simple_repeat 1 84 0 1 1625 432 0 0 0 chr5 136318320 136318368 -16218891 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1625 277 230 27 13 chr5 136318368 136318432 -16218827 - ID_B1 SINE B4 -24 200 135 1 1625 351 290 127 22 chr5 136318447 136318460 -16218799 + ID_B1 SINE B4 77 140 -84 1 1625 580 159 149 0 chr5 136318460 136318567 -16218692 + B1_Mur2 SINE Alu 13 135 -14 1 1625 351 290 127 22 chr5 136318567 136318581 -16218678 + ID_B1 SINE B4 141 224 0 1 1625 230 118 39 0 chr5 136318604 136318655 -16218604 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 1 1625 706 227 85 0 chr5 136318669 136318810 -16218449 - B3A SINE B2 -43 155 3 1 1625 668 253 6 31 chr5 136318810 136318969 -16218290 - ID_B1 SINE B4 -67 157 3 1 1625 464 257 106 120 chr5 136319095 136319303 -16217956 + B4A SINE B4 79 283 -9 1 1625 399 21 0 0 chr5 136319356 136319404 -16217855 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1625 390 221 0 0 chr5 136319895 136319972 -16217287 + ID4 SINE ID 5 81 -2 1 1625 1222 22 0 0 chr5 136320162 136320298 -16216961 + B1_Mm SINE Alu 2 137 -10 1 1625 203 0 0 36 chr5 136320298 136320326 -16216933 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1625 919 216 18 185 chr5 136320619 136320846 -16216413 + B3 SINE B2 7 215 -1 1 1625 261 288 55 61 chr5 136321244 136321407 -16215852 - ORR1E LTR MaLR -121 238 77 1 1625 519 17 0 0 chr5 136321421 136321481 -16215778 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1625 189 0 0 0 chr5 136321492 136321513 -16215746 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1625 434 238 213 0 chr5 136321516 136321638 -16215621 - RSINE1 SINE B4 -14 151 4 1 1625 416 285 19 77 chr5 136321769 136321925 -16215334 + MIR SINE MIR 83 229 -33 1 1625 452 338 46 13 chr5 136322223 136322376 -16214883 + RSINE1 SINE B4 5 162 -3 1 1625 474 75 0 0 chr5 136322501 136322568 -16214691 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1625 1193 260 19 0 chr5 136322575 136322844 -16214415 - B4A SINE B4 -18 274 1 1 1625 465 218 127 0 chr5 136322856 136322966 -16214293 - ID_B1 SINE B4 -20 204 81 1 1625 293 266 182 11 chr5 136323203 136323396 -16213863 + B4A SINE B4 6 231 -61 1 1625 826 204 112 5 chr5 136323414 136323601 -16213658 + B3 SINE B2 1 207 -9 1 1625 1005 97 66 116 chr5 136324530 136324728 -16212531 - B2_Mm2 SINE B2 -6 189 2 1 1625 512 275 5 164 chr5 136324829 136325042 -16212217 - B3A SINE B2 -18 180 2 1 1625 216 337 12 0 chr5 136325066 136325149 -16212110 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 1 1625 405 0 0 0 chr5 136325171 136325216 -16212043 + (TC)n Simple_repeat Simple_repeat 1 45 0 1 1625 892 188 0 13 chr5 136325217 136325368 -16211891 - B1_Mur4 SINE Alu -1 149 1 1 1625 611 242 105 14 chr5 136325368 136325578 -16211681 - B4A SINE B4 -63 229 1 1 1625 898 212 14 0 chr5 136325643 136325789 -16211470 - RSINE1 SINE B4 -14 151 4 1 1625 595 202 85 0 chr5 136325809 136325938 -16211321 - B1F1 SINE Alu -6 143 4 1 1625 261 0 0 0 chr5 136326316 136326345 -16210914 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1625 485 258 78 0 chr5 136326522 136326650 -16210609 + RSINE1 SINE B4 12 149 -16 1 1625 34 24 0 0 chr5 136326675 136326716 -16210543 + AT_rich Low_complexity Low_complexity 1 41 0 1 1625 391 294 62 66 chr5 136327387 136327542 -16209717 - ID_B1 SINE B4 0 224 74 1 1625 333 0 0 0 chr5 136327542 136327579 -16209680 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1625 216 0 0 0 chr5 136327579 136327602 -16209657 + (CG)n Simple_repeat Simple_repeat 2 25 0 1 1625 391 294 62 66 chr5 136327602 136327656 -16209603 - ID SINE ID -151 73 16 1 1625 274 296 10 48 chr5 136327633 136327724 -16209535 - ZP3AR Satellite Satellite -80 132 44 1 1625 204 40 0 0 chr5 136327724 136327749 -16209510 + (TCCA)n Simple_repeat Simple_repeat 4 28 0 1 1625 274 296 10 48 chr5 136327749 136327760 -16209499 - ZP3AR Satellite Satellite -169 43 34 1 1625 291 305 0 21 chr5 136327760 136327846 -16209413 - PB1D10 SINE Alu -21 96 2 1 1625 288 250 79 0 chr5 136328935 136329011 -16208248 + ID2 SINE ID 2 83 0 1 1625 494 198 12 24 chr5 136329062 136329180 -16208079 + PB1D10 SINE Alu 15 129 -20 1 1625 299 282 0 0 chr5 136329192 136329263 -16207996 + B4 SINE B4 5 75 -217 1 1625 704 90 35 36 chr5 136329263 136329526 -16207733 + (CA)n Simple_repeat Simple_repeat 1 262 0 1 1625 588 108 44 13 chr5 136329539 136329698 -16207561 + (CA)n Simple_repeat Simple_repeat 1 164 0 1 1625 531 281 56 50 chr5 136329701 136329952 -16207307 + B4 SINE B4 1 274 -18 1 1625 857 210 58 24 chr5 136332448 136332653 -16204606 + ID_B1 SINE B4 7 218 -6 1 1625 345 47 0 0 chr5 136332657 136332700 -16204559 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1 1625 21 0 0 0 chr5 136334887 136334908 -16202351 + AT_rich Low_complexity Low_complexity 1 21 0 1 1625 259 239 0 0 chr5 136335219 136335290 -16201969 + T-rich Low_complexity Low_complexity 1 71 0 1 1625 291 242 0 87 chr5 136335732 136335836 -16201423 + MT2B LTR ERVL 170 264 -337 1 1625 597 181 43 0 chr5 136335745 136335861 -16201398 + B1_Mus1 SINE Alu 19 139 -9 1 1625 456 51 0 0 chr5 136335861 136335920 -16201339 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 1 1625 793 270 92 10 chr5 136336217 136336423 -16200836 + ID_B1 SINE B4 2 224 0 1 1625 612 91 0 0 chr5 136337103 136337191 -16200068 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 1625 834 303 0 0 chr5 136338744 136338934 -16198325 + B4 SINE B4 2 191 -101 1 1625 533 256 8 8 chr5 136338934 136339052 -16198207 + RSINE1 SINE B4 3 120 -45 1 1625 1092 91 0 0 chr5 136339052 136339206 -16198053 + (CA)n Simple_repeat Simple_repeat 1 154 0 1 1625 279 288 0 12 chr5 136339249 136339330 -16197929 + B4 SINE B4 213 292 0 1 1625 636 174 0 0 chr5 136339367 136339488 -16197771 + GA-rich Low_complexity Low_complexity 2 122 0 1 1625 339 273 30 20 chr5 136340012 136340113 -16197146 + ID_B1 SINE B4 1 102 -122 1 1625 379 194 0 27 chr5 136340143 136340217 -16197042 + Lx8 LINE L1 6576 6647 -826 1 1625 250 250 110 14 chr5 136340237 136340310 -16196949 + ID_B1 SINE B4 137 216 -8 1 1625 334 267 0 13 chr5 136340321 136340397 -16196862 + ID4 SINE ID 1 75 -8 1 1625 344 269 65 0 chr5 136340893 136340926 -16196333 + B1F SINE Alu 26 140 -9 1 1625 437 173 0 0 chr5 136340926 136341001 -16196258 + ID_B1 SINE B4 141 215 -9 1 1625 875 180 115 39 chr5 136341011 136341219 -16196040 + ID_B1 SINE B4 1 224 0 1 1625 465 178 127 0 chr5 136341738 136341841 -16195418 + PB1D10 SINE Alu 2 116 -1 1 1625 410 312 7 66 chr5 136341843 136341994 -16195265 + ID_B1 SINE B4 81 222 -2 1 1625 839 151 14 37 chr5 136341993 136342138 -16195121 + B1_Mur4 SINE Alu 1 140 -10 1 1625 747 87 0 0 chr5 136342138 136342242 -16195017 + (TAAA)n Simple_repeat Simple_repeat 2 105 0 1 1625 839 148 7 34 chr5 136342242 136342256 -16195003 + B1_Mur4 SINE Alu 141 150 0 1 1625 246 198 157 0 chr5 136342287 136342371 -16194888 + PB1D9 SINE Alu 6 116 -1 1 1625 283 313 26 9 chr5 136342544 136342660 -16194599 - MIR3 SINE MIR -1 207 90 1 1625 419 145 0 12 chr5 136343070 136343154 -16194105 + A-rich Low_complexity Low_complexity 2 84 0 1 1625 228 200 0 0 chr5 136343298 136343358 -16193901 + T-rich Low_complexity Low_complexity 3 62 0 1 1625 328 318 0 38 chr5 136343784 136344037 -16193222 + C-rich Low_complexity Low_complexity 1 243 0 1 1625 24 0 0 0 chr5 136344143 136344167 -16193092 + GC_rich Low_complexity Low_complexity 1 24 0 1 1625 25 0 0 0 chr5 136344324 136344349 -16192910 + GC_rich Low_complexity Low_complexity 1 25 0 1 1625 367 261 78 0 chr5 136345870 136345985 -16191274 + PB1 SINE Alu 2 125 -2 1 1625 1117 99 6 11 chr5 136345989 136346172 -16191087 + ZP3AR Satellite Satellite 11 192 -20 1 1625 212 196 39 0 chr5 136346129 136346180 -16191079 + ID2 SINE ID 1 53 -30 1 1625 271 261 145 0 chr5 136346185 136346254 -16191005 + ID4_ SINE ID 5 83 0 1 1625 199 281 67 11 chr5 136346310 136346400 -16190859 + MIR SINE MIR 51 145 -63 1 1625 780 123 0 70 chr5 136346462 136346619 -16190640 - URR1A DNA MER1_type 0 226 81 1 1625 267 100 120 0 chr5 136347116 136347166 -16190093 + B1_Mus2 SINE Alu 76 131 -16 1 1625 1014 98 14 14 chr5 136347193 136347338 -16189921 + B1_Mus1 SINE Alu 3 147 -1 1 1625 670 299 18 52 chr5 136347479 136347708 -16189551 + ID_B1 SINE B4 2 222 -2 1 1625 358 276 45 1 chr5 136347722 136347833 -16189426 + B1F1 SINE Alu 2 117 0 1 1625 775 153 7 7 chr5 136347837 136347988 -16189271 + GA-rich Low_complexity Low_complexity 3 153 0 1 1625 548 277 58 0 chr5 136348002 136348139 -16189120 + ID_B1 SINE B4 80 224 0 1 1625 554 226 96 58 chr5 136348153 136348341 -16188918 + B3A SINE B2 2 196 -2 1 1625 1184 112 27 5 chr5 136348538 136348696 -16188563 + B2_Mm1a SINE B2 2 160 -33 1 1625 207 88 0 0 chr5 136348696 136348730 -16188529 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1 1625 1184 112 27 5 chr5 136348730 136348759 -16188500 + B2_Mm1a SINE B2 161 193 0 1 1625 1362 164 0 0 chr5 136349866 136350079 -16187180 + ID_B1 SINE B4 4 216 -8 1 1625 734 189 0 0 chr5 136350895 136351022 -16186237 + B1_Mur3 SINE Alu 12 138 -11 1 1625 537 246 42 14 chr5 136351056 136351200 -16186059 - RSINE1 SINE B4 -4 161 14 1 1625 360 0 0 0 chr5 136351224 136351264 -16185995 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1625 1547 63 5 0 chr5 136351335 136351526 -16185733 + B2_Mm2 SINE B2 3 194 -1 1 1625 968 28 0 0 chr5 136351526 136351633 -16185626 + U6 snRNA snRNA 1 107 0 1 1625 824 70 70 0 chr5 136351633 136351761 -16185498 + L1Md_F2 LINE L1 6444 6580 -2 1 1625 590 195 87 24 chr5 136351761 136351887 -16185372 - B1F SINE Alu -11 138 5 1 1625 404 114 37 37 chr5 136351939 136352075 -16185184 + (TG)n Simple_repeat Simple_repeat 1 136 0 1 1625 512 200 38 46 chr5 136352132 136352263 -16184996 - B4A SINE B4 -3 289 160 1 1625 426 39 0 0 chr5 136352281 136352333 -16184926 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1625 1102 155 77 5 chr5 136352343 136352550 -16184709 - ORR1A0 LTR MaLR -121 225 4 1 1625 399 162 0 0 chr5 136352557 136352625 -16184634 + B1_Mur4 SINE Alu 83 150 0 1 1625 315 0 0 0 chr5 136352627 136352662 -16184597 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1625 197 119 24 0 chr5 136352685 136352727 -16184532 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 1 1625 1627 52 0 0 chr5 136352771 136352964 -16184295 - B2_Mm1a SINE B2 0 193 1 1 1625 770 218 88 34 chr5 136352969 136353173 -16184086 - B3 SINE B2 -1 215 1 1 1625 468 325 6 43 chr5 136353197 136353358 -16183901 - RSINE1 SINE B4 0 165 11 1 1625 255 61 0 0 chr5 136353376 136353409 -16183850 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1 1625 616 174 50 0 chr5 136353562 136353683 -16183576 - B1_Mur4 SINE Alu -15 135 9 1 1625 396 0 0 0 chr5 136354231 136354275 -16182984 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1625 858 266 77 42 chr5 136354307 136354566 -16182693 - B4 SINE B4 -1 291 24 1 1625 282 172 121 0 chr5 136354733 136354791 -16182468 + B1_Mur4 SINE Alu 1 65 -85 1 1625 288 0 0 0 chr5 136354819 136354851 -16182408 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1 1625 1018 39 0 0 chr5 136354861 136354991 -16182268 - B2_Mm2 SINE B2 -65 130 1 1 1625 544 273 118 7 chr5 136355104 136355248 -16182011 - RSINE1 SINE B4 -3 162 3 1 1625 331 139 198 0 chr5 136355254 136355340 -16181919 - MER31A LTR ERV1 -369 116 14 1 1625 228 250 0 0 chr5 136355452 136355508 -16181751 - MIR3 SINE MIR -38 170 115 1 1625 366 275 22 0 chr5 136356175 136356266 -16180993 - B1_Mus1 SINE Alu -20 128 36 1 1625 282 237 53 34 chr5 136356312 136356437 -16180822 - ID4_ SINE ID -19 133 8 1 1625 516 219 194 92 chr5 136356455 136356651 -16180608 - B3 SINE B2 0 216 1 1 1625 250 311 33 0 chr5 136356661 136356751 -16180508 - PB1D10 SINE Alu -2 115 23 1 1625 1188 45 0 0 chr5 136356769 136356924 -16180335 + (CA)n Simple_repeat Simple_repeat 1 155 0 1 1625 579 256 120 0 chr5 136356954 136357087 -16180172 + B1F2 SINE Alu 1 149 0 1 1625 393 292 64 21 chr5 136357196 136357336 -16179923 + RSINE1 SINE B4 20 165 0 1 1625 459 254 16 0 chr5 136357613 136357735 -16179524 + B1F SINE Alu 25 148 -1 1 1625 718 228 16 6 chr5 136357739 136357919 -16179340 + B3 SINE B2 2 195 -3 1 1625 640 221 7 14 chr5 136358029 136358171 -16179088 + B1_Mur1 SINE Alu 8 148 -1 1 1625 396 248 95 29 chr5 136358428 136358565 -16178694 + ID_B1 SINE B4 78 223 -1 1 1625 269 273 0 38 chr5 136359196 136359276 -16177983 + RSINE1 SINE B4 89 165 0 1 1625 400 267 41 24 chr5 136359330 136359453 -16177806 + B1F SINE Alu 18 142 -7 1 1625 936 185 53 14 chr5 136359504 136359712 -16177547 + B3 SINE B2 1 216 0 1 1625 1114 84 14 0 chr5 136359737 136359880 -16177379 + B1_Mus2 SINE Alu 2 146 -1 1 1625 207 0 0 0 chr5 136359894 136359917 -16177342 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1625 314 317 9 37 chr5 136359933 136360041 -16177218 + RSINE1 SINE B4 46 150 -15 1 1625 1175 89 0 0 chr5 136360123 136360269 -16176990 - B1_Mus2 SINE Alu 0 147 2 1 1625 1344 143 6 13 chr5 136360299 136360527 -16176732 + ZP3AR Satellite Satellite 1 226 0 1 1625 213 288 0 140 chr5 136360452 136360545 -16176714 + ID4_ SINE ID 1 80 -3 1 1625 229 347 122 58 chr5 136360659 136360864 -16176395 - MIR SINE MIR -6 256 39 1 1625 553 263 8 8 chr5 136360928 136361062 -16176197 + ID_B1 SINE B4 90 223 -1 1 1625 259 254 14 0 chr5 136361114 136361185 -16176074 + B4A SINE B4 1 72 -220 1 1625 1188 74 0 0 chr5 136361287 136361435 -16175824 + B1_Mus1 SINE Alu 1 148 0 1 1625 217 130 12 72 chr5 136361473 136361556 -16175703 + GA-rich Low_complexity Low_complexity 2 79 0 1 1625 260 294 37 112 chr5 136361747 136361881 -16175378 + MT2B LTR ERVL 135 258 -343 1 1625 484 221 53 0 chr5 136361790 136361903 -16175356 + B1_Mur4 SINE Alu 10 128 -22 1 1625 338 257 8 125 chr5 136362038 136362086 -16175173 + B3 SINE B2 8 49 -167 1 1625 2857 58 13 121 chr5 136362086 136362342 -16174917 - MTB LTR MaLR 0 400 196 1 1625 1135 77 0 0 chr5 136362342 136362485 -16174774 - B1_Mus1 SINE Alu -4 144 2 1 1625 2857 58 13 121 chr5 136362485 136362676 -16174583 - MTB LTR MaLR -205 195 1 1 1625 338 276 19 114 chr5 136362676 136362792 -16174467 + B3 SINE B2 50 160 -33 1 1625 414 0 0 0 chr5 136362792 136362838 -16174421 + (TA)n Simple_repeat Simple_repeat 1 46 0 1 1625 236 305 36 97 chr5 136362838 136362854 -16174405 + B2_Mm1t SINE B2 161 176 -17 1 1625 1208 55 0 0 chr5 136362854 136363000 -16174259 + B1_Mm SINE Alu 2 147 0 1 1625 236 305 36 97 chr5 136363000 136363015 -16174244 + B2_Mm1t SINE B2 177 191 -2 1 1625 1086 108 0 13 chr5 136363027 136363177 -16174082 + B1_Mus1 SINE Alu 1 148 0 1 1625 246 182 0 0 chr5 136363177 136363243 -16174016 + A-rich Low_complexity Low_complexity 1 66 0 1 1625 489 52 39 0 chr5 136363252 136363329 -16173930 + (GA)n Simple_repeat Simple_repeat 2 81 0 1 1625 277 311 139 15 chr5 136363338 136363475 -16173784 + RSINE1 SINE B4 3 156 -9 1 1625 297 167 23 103 chr5 136364531 136364618 -16172641 + ID4 SINE ID 4 83 0 1 1625 1399 99 5 16 chr5 136365576 136365770 -16171489 + B2_Mm1t SINE B2 1 192 -1 1 1625 433 254 39 54 chr5 136365790 136365935 -16171324 + B1F SINE Alu 10 149 0 1 1625 621 173 163 24 chr5 136365952 136366118 -16171141 + ID_B1 SINE B4 15 203 -21 1 1625 296 286 0 0 chr5 136366059 136366129 -16171130 + B1F SINE Alu 67 136 -13 1 1625 367 237 0 93 chr5 136366660 136366767 -16170492 + PB1D10 SINE Alu 13 109 -8 1 1625 348 307 30 52 chr5 136366767 136366794 -16170465 + ID_B1 SINE B4 94 224 0 1 1625 709 234 51 6 chr5 136367211 136367387 -16169872 + B3A SINE B2 5 188 -10 1 1625 429 255 29 19 chr5 136367424 136367528 -16169731 + PB1D10 SINE Alu 1 105 -12 1 1625 412 319 133 0 chr5 136367529 136367664 -16169595 + RSINE1 SINE B4 8 160 -5 1 1625 1109 123 6 0 chr5 136367707 136367886 -16169373 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1625 523 285 146 0 chr5 136367914 136368079 -16169180 + ID_B1 SINE B4 36 224 0 1 1625 398 301 39 0 chr5 136368097 136368200 -16169059 + PB1D10 SINE Alu 8 114 -3 1 1625 450 260 212 17 chr5 136368210 136368441 -16168818 + B4A SINE B4 1 276 -16 1 1625 449 80 0 13 chr5 136368443 136368519 -16168740 + (CA)n Simple_repeat Simple_repeat 1 75 0 1 1625 837 210 31 72 chr5 136369366 136369561 -16167698 - B3 SINE B2 -2 214 28 1 1625 537 182 12 154 chr5 136369569 136369738 -16167521 - B1_Mur4 SINE Alu 0 150 6 1 1625 26 0 0 0 chr5 136369745 136369771 -16167488 + AT_rich Low_complexity Low_complexity 1 26 0 1 1625 1564 44 16 0 chr5 136369771 136369954 -16167305 + B2_Mm2 SINE B2 2 187 -8 1 1625 1107 74 140 12 chr5 136369956 136370120 -16167139 - B2_Mm2 SINE B2 -10 185 1 1 1625 1146 81 0 0 chr5 136370183 136370331 -16166928 + B1_Mus1 SINE Alu 1 148 0 1 1625 270 136 0 0 chr5 136370358 136370402 -16166857 + (GAA)n Simple_repeat Simple_repeat 2 45 0 1 1625 227 31 31 0 chr5 136371211 136371243 -16166016 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1625 1365 57 80 0 chr5 136371319 136371334 -16165925 - B2_Mm1a SINE B2 -3 190 176 1 1625 243 0 0 0 chr5 136371334 136371361 -16165898 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1 1625 1365 57 80 0 chr5 136371361 136371520 -16165739 - B2_Mm1a SINE B2 -18 175 3 1 1625 1574 53 0 5 chr5 136371524 136371713 -16165546 - B2_Mm2 SINE B2 -6 189 2 1 1625 207 0 0 0 chr5 136371734 136371757 -16165502 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1625 904 42 0 0 chr5 136372377 136372495 -16164764 + B1_Mus2 SINE Alu 28 145 -2 1 1625 700 108 23 0 chr5 136372501 136372630 -16164629 + (GAAAA)n Simple_repeat Simple_repeat 2 133 0 1 1625 527 247 58 13 chr5 136373091 136373247 -16164012 - ID_B1 SINE B4 -22 202 40 1 1625 315 0 0 0 chr5 136373274 136373309 -16163950 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1625 360 0 0 0 chr5 136373309 136373348 -16163911 + (GA)n Simple_repeat Simple_repeat 1 40 0 1 1625 380 227 15 105 chr5 136373368 136373501 -16163758 - MT2B LTR ERVL -314 287 167 1 1625 648 94 19 19 chr5 136373394 136373502 -16163757 - B1_Mur4 SINE Alu -41 109 2 1 1625 907 209 26 62 chr5 136373643 136373864 -16163395 + ID_B1 SINE B4 6 218 -6 1 1625 410 211 164 0 chr5 136374030 136374134 -16163125 + ORR1E LTR MaLR 1 121 -238 1 1625 312 27 0 0 chr5 136374244 136374281 -16162978 + (TC)n Simple_repeat Simple_repeat 2 38 0 1 1625 1160 62 0 14 chr5 136374284 136374431 -16162828 - B1_Mus1 SINE Alu -2 146 2 1 1625 650 35 12 0 chr5 136374654 136374739 -16162520 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 1 1625 541 317 6 12 chr5 136374740 136374909 -16162350 - ID_B1 SINE B4 -21 203 36 1 1625 209 109 22 0 chr5 136375707 136375753 -16161506 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 1 1625 1073 64 42 14 chr5 136375758 136375901 -16161358 - B1_Mus1 SINE Alu 0 148 2 1 1625 841 265 86 43 chr5 136376138 136376418 -16160841 + B4 SINE B4 1 292 0 1 1625 210 236 0 0 chr5 136376451 136376506 -16160753 + GA-rich Low_complexity Low_complexity 2 56 0 1 1625 480 180 11 0 chr5 136376862 136376951 -16160308 - B1_Mus2 SINE Alu 0 147 58 1 1625 1275 168 190 0 chr5 136376935 136377203 -16160056 + MTC LTR MaLR 59 377 -44 1 1625 429 218 157 11 chr5 136377320 136377454 -16159805 - B3A SINE B2 -3 195 53 1 1625 992 113 28 7 chr5 136377479 136377621 -16159638 - B1_Mus2 SINE Alu -2 145 1 1 1625 505 278 142 0 chr5 136377628 136377790 -16159469 - ID_B1 SINE B4 -6 218 34 1 1625 318 326 34 0 chr5 136377802 136377891 -16159368 - PB1D7 SINE Alu -27 93 2 1 1625 470 263 29 126 chr5 136377891 136377986 -16159273 - ID SINE ID -142 82 5 1 1625 1043 133 5 27 chr5 136378054 136378239 -16159020 - ZP3AR Satellite Satellite -26 186 6 1 1625 432 0 0 0 chr5 136378388 136378436 -16158823 + (TC)n Simple_repeat Simple_repeat 2 49 0 1 1625 315 0 0 0 chr5 136378436 136378470 -16158789 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1625 428 269 9 36 chr5 136378650 136378762 -16158497 + RSINE1 SINE B4 3 111 -54 1 1625 603 187 0 47 chr5 136378796 136378925 -16158334 - B1_Mur2 SINE Alu -25 124 2 1 1625 211 231 77 0 chr5 136380113 136380165 -16157094 - B1_Mur2 SINE Alu 0 149 94 1 1625 242 300 33 85 chr5 136380420 136380573 -16156686 - B4A SINE B4 0 292 148 1 1625 980 113 42 7 chr5 136380815 136380958 -16156301 - B1_Mur3 SINE Alu -1 148 1 1 1625 244 189 132 0 chr5 136381099 136381152 -16156107 + B1_Mus1 SINE Alu 20 79 -69 1 1625 234 0 0 0 chr5 136381491 136381517 -16155742 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1625 387 0 0 0 chr5 136381517 136381559 -16155700 + (TC)n Simple_repeat Simple_repeat 1 43 0 1 1625 655 127 189 33 chr5 136381571 136381693 -16155566 - B1_Mus1 SINE Alu -7 141 1 1 1625 238 191 127 0 chr5 136381938 136382001 -16155258 - B1_Mus1 SINE Alu -77 71 1 1 1625 1372 80 27 5 chr5 136382133 136382321 -16154938 + B2_Mm1a SINE B2 2 193 0 1 1625 417 219 75 19 chr5 136382689 136382796 -16154463 + PB1D10 SINE Alu 1 113 -4 1 1625 410 173 162 9 chr5 136382928 136383033 -16154226 + URR1B DNA MER1_type 105 225 0 1 1625 311 182 37 49 chr5 136383582 136383663 -16153596 - PB1D10 SINE Alu -6 111 32 1 1625 454 183 0 29 chr5 136383706 136383813 -16153446 - B1_Mus2 SINE Alu -11 136 39 1 1625 347 261 31 52 chr5 136383967 136384064 -16153195 - PB1D7 SINE Alu -20 100 6 1 1625 26 50 0 0 chr5 136384702 136384742 -16152517 + AT_rich Low_complexity Low_complexity 1 40 0 1 1625 501 17 0 0 chr5 136386382 136386440 -16150819 + (GA)n Simple_repeat Simple_repeat 2 59 0 1 1625 336 261 103 9 chr5 136387985 136388101 -16149158 + RSINE1 SINE B4 3 129 -36 1 1625 384 172 20 70 chr5 136388190 136388237 -16149022 + B1_Mur4 SINE Alu 1 42 -108 1 1625 899 183 16 35 chr5 136388237 136388424 -16148835 + B3 SINE B2 1 190 -8 1 1625 448 183 24 24 chr5 136388426 136388510 -16148749 + B1_Mur2 SINE Alu 66 149 0 1 1625 557 231 238 113 chr5 136388916 136388971 -16148288 - MTD LTR MaLR -3 416 364 1 1625 1126 88 0 0 chr5 136388971 136389118 -16148141 - B1_Mus1 SINE Alu 0 148 2 1 1625 557 231 238 113 chr5 136389118 136389364 -16147895 - MTD LTR MaLR -56 363 77 1 1625 392 244 22 0 chr5 136389608 136389698 -16147561 - ID_B1 SINE B4 -125 99 8 1 1625 274 174 152 65 chr5 136389760 136389852 -16147407 - PB1D9 SINE Alu -9 111 12 1 1625 225 278 30 45 chr5 136390497 136390629 -16146630 + ID_B1 SINE B4 93 222 -2 1 1625 1089 64 2 14 chr5 136390671 136390832 -16146427 + B1_Mm SINE Alu 1 149 0 1 1625 314 239 14 0 chr5 136390853 136390924 -16146335 + B1_Mur3 SINE Alu 52 123 -26 1 1625 364 338 61 20 chr5 136390956 136391104 -16146155 + B3 SINE B2 7 160 -56 1 1625 189 107 0 0 chr5 136391160 136391188 -16146071 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1625 597 125 83 0 chr5 136391208 136391304 -16145955 + B3A SINE B2 6 109 -89 1 1625 231 36 0 0 chr5 136391312 136391340 -16145919 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1625 276 239 212 35 chr5 136391500 136391613 -16145646 + ID_B1 SINE B4 50 182 -42 1 1625 338 222 67 48 chr5 136391767 136391871 -16145388 + PB1D10 SINE Alu 5 110 -7 1 1625 284 236 176 22 chr5 136391909 136392000 -16145259 + L1MC1 LINE L1 6195 6299 -34 1 1625 444 293 84 67 chr5 136392312 136392491 -16144768 + MER68 LTR ERVL 1 182 -381 1 1625 293 178 0 0 chr5 136393435 136393480 -16143779 + B1F2 SINE Alu 4 48 -101 1 1625 180 313 57 43 chr5 136393601 136393671 -16143588 + L4 LINE RTE 515 585 -1444 1 1625 458 198 331 0 chr5 136393681 136393838 -16143421 - B3 SINE B2 -7 209 1 1 1625 461 273 168 49 chr5 136393931 136394116 -16143143 - B4 SINE B4 -21 271 65 1 1625 373 256 64 11 chr5 136394540 136394724 -16142535 + B2_Mm2 SINE B2 5 209 -7 1 1625 208 226 0 31 chr5 136395174 136395218 -16142041 + A-rich Low_complexity Low_complexity 1 43 0 1 1625 1217 62 0 0 chr5 136395218 136395364 -16141895 + B1_Mus2 SINE Alu 2 147 0 1 1625 208 226 0 31 chr5 136395364 136395383 -16141876 + A-rich Low_complexity Low_complexity 44 62 0 1 1625 491 239 141 6 chr5 136395434 136395590 -16141669 - B3A SINE B2 -18 180 4 1 1625 246 330 98 20 chr5 136395591 136395693 -16141566 - B1F SINE Alu -39 110 1 1 1625 293 306 71 0 chr5 136395609 136395694 -16141565 - ID_B1 SINE B4 -53 171 81 1 1625 342 0 0 0 chr5 136396033 136396071 -16141188 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1625 255 219 105 40 chr5 136396124 136396200 -16141059 + B1F1 SINE Alu 68 148 -1 1 1625 260 344 73 0 chr5 136396210 136396306 -16140953 + PB1D9 SINE Alu 1 103 -17 1 1625 303 180 16 47 chr5 136396440 136396504 -16140755 - B2_Mm2 SINE B2 -132 63 2 1 1625 255 263 0 44 chr5 136396879 136396891 -16140368 + B1F SINE Alu 27 60 -60 1 1625 255 217 49 16 chr5 136396891 136396952 -16140307 + ID_B1 SINE B4 142 204 -20 1 1625 255 263 0 44 chr5 136396952 136396965 -16140294 + B1F SINE Alu 61 104 -16 1 1625 536 183 21 0 chr5 136397123 136397216 -16140043 - B1_Mus1 SINE Alu -53 95 1 1 1625 403 247 22 22 chr5 136397288 136397379 -16139880 - PB1D10 SINE Alu -22 95 5 1 1625 189 0 0 0 chr5 136397654 136397675 -16139584 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1 1625 315 239 0 107 chr5 136397804 136397907 -16139352 - B4 SINE B4 -117 175 84 1 1625 807 154 7 40 chr5 136397990 136398139 -16139120 + B1_Mus1 SINE Alu 5 148 0 1 1625 295 324 29 0 chr5 136398154 136398256 -16139003 - PB1 SINE Alu -21 106 2 1 1625 230 270 0 63 chr5 136398570 136398649 -16138610 + PB1D10 SINE Alu 23 96 -21 1 1625 811 123 33 86 chr5 136398809 136398960 -16138299 - B1_Mus1 SINE Alu -3 145 3 1 1625 419 291 158 42 chr5 136399224 136399389 -16137870 + B4 SINE B4 49 232 -60 1 1625 291 54 0 0 chr5 136399389 136399426 -16137833 + (TGGGGG)n Simple_repeat Simple_repeat 4 40 0 1 1625 320 325 84 26 chr5 136399432 136399587 -16137672 + RSINE1 SINE B4 2 165 0 1 1625 1065 90 7 0 chr5 136399634 136399779 -16137480 + B1_Mus2 SINE Alu 1 146 -1 1 1625 570 208 0 9 chr5 136399907 136400014 -16137245 + RSINE1 SINE B4 21 126 -39 1 1625 192 125 0 0 chr5 136400055 136400087 -16137172 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1625 1195 61 0 7 chr5 136400198 136400334 -16136925 + B1_Mus2 SINE Alu 1 136 -11 1 1625 207 0 0 0 chr5 136400334 136400357 -16136902 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1 1625 1195 61 0 7 chr5 136400357 136400368 -16136891 + B1_Mus2 SINE Alu 137 147 0 1 1625 566 192 160 0 chr5 136400390 136400515 -16136744 + B1_Mus2 SINE Alu 2 146 -1 1 1625 205 224 0 39 chr5 136400925 136400976 -16136283 + (CGTG)n Simple_repeat Simple_repeat 1 49 0 1 1625 257 206 191 0 chr5 136401075 136401143 -16136116 + PB1D10 SINE Alu 25 105 -12 1 1625 225 315 96 0 chr5 136401225 136401298 -16135961 - ID4_ SINE ID -2 81 2 1 1625 586 294 26 13 chr5 136401420 136401575 -16135684 - RSINE1 SINE B4 -6 159 3 1 1625 373 266 96 8 chr5 136401608 136401733 -16135526 + ID_B1 SINE B4 87 222 -2 1 1625 528 239 88 15 chr5 136401761 136401897 -16135362 + B1_Mus2 SINE Alu 2 147 0 1 1625 1241 54 0 0 chr5 136402105 136402252 -16135007 + B1_Mus2 SINE Alu 1 147 0 1 1625 325 214 41 134 chr5 136402710 136402807 -16134452 + MT2B LTR ERVL 152 239 -362 1 1625 444 193 0 57 chr5 136402729 136402817 -16134442 + B1_Mm SINE Alu 9 91 -56 1 1625 438 301 95 34 chr5 136402774 136402927 -16134332 + B3A SINE B2 8 174 -24 1 1625 291 28 0 0 chr5 136402927 136402963 -16134296 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1625 438 301 95 34 chr5 136402963 136402988 -16134271 + B3A SINE B2 175 197 -1 1 1625 677 268 26 0 chr5 136403254 136403330 -16133929 + ID SINE ID 2 81 -143 1 1625 251 334 33 38 chr5 136403330 136403438 -16133821 + PB1 SINE Alu 1 104 -16 1 1625 275 197 181 14 chr5 136403440 136403512 -16133747 + B3A SINE B2 27 110 -88 1 1625 263 206 101 14 chr5 136403555 136403624 -16133635 + PB1D7 SINE Alu 12 86 -34 1 1625 331 211 0 199 chr5 136403562 136403627 -16133632 + ID_B1 SINE B4 103 166 -58 1 1625 1255 34 0 7 chr5 136403627 136403775 -16133484 + B1_Mus2 SINE Alu 1 147 0 1 1625 331 211 0 199 chr5 136403775 136403845 -16133414 + ID_B1 SINE B4 167 211 -13 1 1625 363 172 163 41 chr5 136404141 136404277 -16132982 + B1_Mur2 SINE Alu 2 139 -10 1 1625 219 286 64 13 chr5 136404336 136404414 -16132845 + ID4_ SINE ID 2 83 0 1 1625 210 37 0 0 chr5 136404573 136404600 -16132659 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1625 323 224 65 76 chr5 136404601 136404693 -16132566 + B3A SINE B2 105 195 -3 1 1625 242 252 5 70 chr5 136404891 136405008 -16132251 + PB1D7 SINE Alu 40 141 -8 1 1625 1114 87 0 0 chr5 136405016 136405165 -16132094 + B2_Mm2 SINE B2 4 152 -43 1 1625 437 184 40 0 chr5 136405226 136405302 -16131957 + ID_B1 SINE B4 134 212 -12 1 1625 269 247 40 27 chr5 136405241 136405316 -16131943 + B1F SINE Alu 74 149 0 1 1625 672 215 106 20 chr5 136405319 136405518 -16131741 + B3 SINE B2 1 216 0 1 1625 207 0 0 0 chr5 136406282 136406305 -16130954 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1625 414 283 17 26 chr5 136406318 136406434 -16130825 + PB1D7 SINE Alu 1 115 -5 1 1625 684 232 22 0 chr5 136406678 136406816 -16130443 + RSINE1 SINE B4 3 143 -22 1 1625 559 206 168 0 chr5 136407232 136407387 -16129872 - Tigger7 DNA MER2_type -33 2458 2278 1 1625 180 0 0 0 chr5 136408785 136408805 -16128454 + (TC)n Simple_repeat Simple_repeat 1 20 0 1 1625 201 39 0 0 chr5 136409573 136409599 -16127660 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1625 234 0 0 0 chr5 136410756 136410782 -16126477 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1625 225 0 0 0 chr5 136411695 136411720 -16125539 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1625 1031 151 171 105 chr5 136411731 136412006 -16125253 + RMER10A LTR ERVL 9 372 -70 1 1625 1128 56 0 34 chr5 136412006 136412155 -16125104 - B1_Mus1 SINE Alu 0 148 5 1 1625 1031 120 142 132 chr5 136412155 136412229 -16125030 + RMER10A LTR ERVL 373 433 -9 1 1625 312 197 14 40 chr5 136412259 136412333 -16124926 + PB1D9 SINE Alu 21 92 -55 1 1625 207 0 0 0 chr5 136412333 136412356 -16124903 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 1 1625 590 278 88 6 chr5 136412369 136412550 -16124709 + B3A SINE B2 3 198 0 1 1625 924 158 7 0 chr5 136412556 136412702 -16124557 + B1_Mus2 SINE Alu 1 147 0 1 1625 1006 66 65 7 chr5 136412749 136412887 -16124372 + B1_Mus2 SINE Alu 2 147 0 1 1625 747 189 29 7 chr5 136413000 136413139 -16124120 + B1_Mur4 SINE Alu 9 150 0 1 1625 618 227 87 38 chr5 136413250 136413313 -16123946 + B4 SINE B4 19 87 -205 1 1625 231 36 0 0 chr5 136413313 136413341 -16123918 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1625 618 227 87 38 chr5 136413341 136413460 -16123799 + B4 SINE B4 88 210 -82 1 1625 382 244 58 11 chr5 136413471 136413558 -16123701 - B1_Mur4 SINE Alu -57 93 3 1 1625 278 289 31 188 chr5 136413953 136414081 -16123178 - ID_B1 SINE B4 0 224 117 1 1625 508 289 21 0 chr5 136414123 136414265 -16122994 - B1F SINE Alu 0 149 5 1 1625 1120 222 0 5 chr5 136414402 136414619 -16122640 + B3 SINE B2 1 216 0 1 1625 399 314 0 10 chr5 136414679 136414782 -16122477 + PB1D7 SINE Alu 19 120 0 1 1625 1119 237 0 0 chr5 136414787 136415002 -16122257 + B3 SINE B2 2 216 0 1 1625 352 167 167 0 chr5 136415029 136415095 -16122164 + RSINE1 SINE B4 2 78 -87 1 1625 208 70 47 0 chr5 136415406 136415449 -16121810 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1625 729 88 176 0 chr5 136415569 136415694 -16121565 + B1_Mus1 SINE Alu 1 147 -1 1 1625 298 219 23 58 chr5 136415704 136415791 -16121468 + RSINE1 SINE B4 82 165 0 1 1625 852 170 2 0 chr5 136415792 136416215 -16121044 + (CA)n Simple_repeat Simple_repeat 1 424 0 1 1625 25 51 0 0 chr5 136416220 136416259 -16121000 + AT_rich Low_complexity Low_complexity 1 39 0 1 1625 480 35 0 0 chr5 136416299 136416357 -16120902 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1625 242 173 0 37 chr5 136416376 136416430 -16120829 + B1_Mur1 SINE Alu 98 149 0 1 1625 529 250 39 101 chr5 136416440 136416618 -16120641 - ID_B1 SINE B4 -56 168 2 1 1625 329 348 15 15 chr5 136416991 136417128 -16120131 + MIR3 SINE MIR 21 157 -51 1 1625 807 262 75 126 chr5 136417157 136417373 -16119886 - B4 SINE B4 0 292 87 1 1625 1128 65 7 0 chr5 136417373 136417511 -16119748 - B1_Mus1 SINE Alu -9 139 1 1 1625 807 262 75 126 chr5 136417511 136417587 -16119672 - B4 SINE B4 -206 86 15 1 1625 439 238 33 8 chr5 136417606 136417717 -16119542 + B1_Mur1 SINE Alu 1 149 0 1 1625 1481 54 32 0 chr5 136417721 136417906 -16119353 + B2_Mm1t SINE B2 2 192 -1 1 1625 213 133 0 0 chr5 136417948 136417972 -16119287 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1625 979 82 96 0 chr5 136417972 136418107 -16119152 + B1_Mus1 SINE Alu 1 148 0 1 1625 213 133 0 0 chr5 136418107 136418127 -16119132 + (A)n Simple_repeat Simple_repeat 1 20 0 1 1625 906 251 24 5 chr5 136418152 136418364 -16118895 + B3 SINE B2 1 216 0 1 1625 318 245 30 60 chr5 136418384 136418484 -16118775 + B1_Mur2 SINE Alu 1 97 -52 1 1625 702 0 0 0 chr5 136418494 136418572 -16118687 + (GGAGA)n Simple_repeat Simple_repeat 1 78 0 1 1625 432 209 226 0 chr5 136418774 136418889 -16118370 + ID_B1 SINE B4 84 224 0 1 1625 250 294 15 0 chr5 136418891 136418959 -16118300 + B4A SINE B4 76 144 -148 1 1625 347 328 14 88 chr5 136418905 136418988 -16118271 + B1F SINE Alu 6 88 -61 1 1625 1135 62 7 14 chr5 136418988 136419134 -16118125 + B1_Mus2 SINE Alu 3 147 0 1 1625 347 328 14 88 chr5 136419134 136419197 -16118062 + B1F SINE Alu 89 141 -8 1 1625 417 81 0 0 chr5 136419199 136419261 -16117998 + (TC)n Simple_repeat Simple_repeat 2 63 0 1 1625 279 93 0 0 chr5 136419261 136419304 -16117955 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1625 345 286 27 113 chr5 136419388 136419441 -16117818 - B4A SINE B4 -154 138 86 1 1625 378 0 0 0 chr5 136419441 136419483 -16117776 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1625 524 15 15 0 chr5 136419493 136419558 -16117701 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1625 345 286 27 113 chr5 136419558 136419643 -16117616 - B4A SINE B4 -207 85 2 1 1625 248 171 0 0 chr5 136419652 136419693 -16117566 + B1_Mur1 SINE Alu 93 133 -16 1 1625 378 0 0 0 chr5 136419816 136419858 -16117401 + (TC)n Simple_repeat Simple_repeat 2 43 0 1 1625 339 65 0 0 chr5 136419858 136419904 -16117355 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1625 468 128 31 16 chr5 136419899 136420026 -16117233 + (TCTCTG)n Simple_repeat Simple_repeat 2 130 0 1 1625 265 256 0 124 chr5 136420045 136420134 -16117125 - PB1D10 SINE Alu -3 114 37 1 1625 956 250 116 4 chr5 136420142 136420383 -16116876 - B4A SINE B4 -23 269 2 1 1625 477 319 97 16 chr5 136420672 136420857 -16116402 + ID_B1 SINE B4 3 202 -22 1 1625 391 80 0 0 chr5 136420857 136420907 -16116352 - ORR1A2 LTR MaLR -5 321 272 1 1625 1119 55 7 0 chr5 136420921 136421066 -16116193 - B1_Mus1 SINE Alu -1 147 2 1 1625 1825 99 55 4 chr5 136421066 136421337 -16115922 - ORR1A2 LTR MaLR -42 285 1 1 1625 401 269 64 18 chr5 136421365 136421475 -16115784 + PB1D10 SINE Alu 1 115 -2 1 1625 225 362 75 58 chr5 136421513 136421686 -16115573 - ORR1D2 LTR MaLR -189 181 6 1 1625 278 148 0 18 chr5 136422357 136422412 -16114847 + CT-rich Low_complexity Low_complexity 1 54 0 1 1625 324 338 25 115 chr5 136422413 136422530 -16114729 - ID_B1 SINE B4 -2 222 109 1 1625 381 43 0 0 chr5 136422530 136422577 -16114682 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1625 324 338 25 115 chr5 136422577 136422703 -16114556 - ID_B1 SINE B4 -116 108 3 1 1625 969 69 0 107 chr5 136422627 136422835 -16114424 - ZP3AR Satellite Satellite -148 185 1 1 1625 1081 65 0 14 chr5 136422938 136423078 -16114181 + B1_Mus1 SINE Alu 2 139 -9 1 1625 195 42 0 0 chr5 136423078 136423102 -16114157 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1625 358 233 82 0 chr5 136423104 136423177 -16114082 - ID_B1 SINE B4 -17 207 129 1 1625 441 0 0 0 chr5 136423347 136423396 -16113863 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1625 288 216 184 26 chr5 136423396 136423472 -16113787 + PB1D7 SINE Alu 27 114 -6 1 1625 597 259 48 0 chr5 136423493 136423640 -16113619 + RSINE1 SINE B4 8 161 -4 1 1625 1101 55 185 0 chr5 136423701 136423847 -16113412 + B2_Mm1a SINE B2 2 174 -19 1 1625 708 226 40 65 chr5 136423908 136424107 -16113152 + B3A SINE B2 1 194 -4 1 1625 1215 62 0 0 chr5 136424128 136424274 -16112985 - B1_Mm SINE Alu -1 146 1 1 1625 571 250 0 8 chr5 136424307 136424428 -16112831 + PB1D9 SINE Alu 1 120 0 1 1625 376 208 78 0 chr5 136424453 136424530 -16112729 + ID4_ SINE ID 1 83 0 1 1625 300 236 120 33 chr5 136424531 136424623 -16112636 - MLT1A1 LTR MaLR -56 352 253 1 1625 242 208 19 0 chr5 136424667 136424720 -16112539 + CT-rich Low_complexity Low_complexity 2 55 0 1 1625 343 185 213 21 chr5 136424739 136424833 -16112426 - PB1D10 SINE Alu -5 112 1 1 1625 214 286 191 0 chr5 136425470 136425533 -16111726 - RSINE1 SINE B4 -5 160 86 1 1625 304 165 39 69 chr5 136425626 136425756 -16111503 + (TATATG)n Simple_repeat Simple_repeat 6 131 0 1 1625 336 269 128 47 chr5 136425756 136425904 -16111355 - RSINE1 SINE B4 -4 161 2 1 1625 254 87 22 0 chr5 136425915 136425961 -16111298 + (TATTG)n Simple_repeat Simple_repeat 2 48 0 1 1625 204 40 0 0 chr5 136425994 136426019 -16111240 + (TCC)n Simple_repeat Simple_repeat 3 27 0 1 1625 470 167 88 19 chr5 136426019 136426139 -16111120 - B3 SINE B2 -27 168 48 1 1625 1011 16 8 0 chr5 136426180 136426301 -16110958 - B1_Mus2 SINE Alu 0 147 26 1 1625 427 272 29 0 chr5 136426306 136426409 -16110850 - PB1D7 SINE Alu -5 115 10 1 1625 459 241 26 26 chr5 136426434 136426543 -16110716 - B1F SINE Alu -1 148 40 1 1625 488 309 103 0 chr5 136426543 136426679 -16110580 + RSINE1 SINE B4 1 150 -15 1 1625 420 20 0 0 chr5 136426682 136426731 -16110528 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1625 701 103 160 38 chr5 136426745 136426876 -16110383 + B1_Mur1 SINE Alu 2 148 -1 1 1625 503 254 87 0 chr5 136427516 136427642 -16109617 + ZP3AR Satellite Satellite 43 179 -33 1 1625 1525 58 11 0 chr5 136427896 136428087 -16109172 - B2_Mm1t SINE B2 0 193 1 1 1625 271 211 0 17 chr5 136428368 136428426 -16108833 + ID_B1 SINE B4 121 177 -47 1 1625 203 56 56 0 chr5 136428428 136428464 -16108795 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1 1625 1176 61 0 33 chr5 136428464 136428617 -16108642 - B1_Mus1 SINE Alu 0 148 1 1 1625 229 151 38 0 chr5 136428716 136428769 -16108490 + GA-rich Low_complexity Low_complexity 2 56 0 1 1625 317 301 86 0 chr5 136429005 136429098 -16108161 + ID_B1 SINE B4 86 186 -38 1 1625 668 246 58 90 chr5 136429130 136429267 -16107992 + B3 SINE B2 1 120 -96 1 1625 1131 95 0 0 chr5 136429267 136429414 -16107845 - B1_Mus1 SINE Alu 0 148 2 1 1625 668 246 58 90 chr5 136429414 136429499 -16107760 + B3 SINE B2 121 216 0 1 1625 1104 59 7 0 chr5 136429518 136429653 -16107606 + B1_Mus1 SINE Alu 1 136 -12 1 1625 243 0 0 0 chr5 136429654 136429681 -16107578 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1625 735 245 29 43 chr5 136429715 136429924 -16107335 + B3 SINE B2 2 207 -9 1 1625 1164 77 0 0 chr5 136429948 136430091 -16107168 - B1_Mus2 SINE Alu -2 145 3 1 1625 203 254 0 0 chr5 136430091 136430154 -16107105 + A-rich Low_complexity Low_complexity 1 63 0 1 1625 436 308 18 42 chr5 136430371 136430537 -16106722 + RSINE1 SINE B4 2 163 -2 1 1625 1307 20 0 0 chr5 136430589 136430736 -16106523 + B1_Mm SINE Alu 1 147 0 1 1625 225 0 0 0 chr5 136430736 136430761 -16106498 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1625 1001 208 99 0 chr5 136430836 136431038 -16106221 - ID_B1 SINE B4 0 224 3 1 1625 397 182 51 13 chr5 136431071 136431149 -16106110 - PB1D9 SINE Alu -13 107 27 1 1625 314 348 12 31 chr5 136431177 136431337 -16105922 - RSINE1 SINE B4 -6 159 3 1 1625 216 0 0 0 chr5 136431347 136431371 -16105888 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1625 1020 98 0 0 chr5 136431372 136431505 -16105754 - B1_Mus2 SINE Alu -12 135 3 1 1625 189 74 0 0 chr5 136431884 136431911 -16105348 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1625 1190 82 0 0 chr5 136431911 136432058 -16105201 - B1_Mus2 SINE Alu 0 147 1 1 1625 309 261 65 11 chr5 136432165 136432258 -16105001 + PB1D7 SINE Alu 11 108 -12 1 1625 329 308 22 11 chr5 136432259 136432351 -16104908 + ID_B1 SINE B4 129 221 -3 1 1625 403 248 184 32 chr5 136432426 136432551 -16104708 - ID_B1 SINE B4 -3 221 78 1 1625 314 254 14 0 chr5 136432687 136432758 -16104501 - ID SINE ID -152 72 1 1 1625 552 142 161 42 chr5 136432891 136433009 -16104250 + B1_Mus2 SINE Alu 16 147 0 1 1625 700 236 127 37 chr5 136433048 136433237 -16104022 + ID_B1 SINE B4 9 214 -10 1 1625 198 0 0 0 chr5 136433952 136433974 -16103285 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1625 700 230 72 36 chr5 136434299 136434493 -16102766 + B3 SINE B2 1 201 -15 1 1625 443 363 42 17 chr5 136434495 136434765 -16102494 + B4A SINE B4 6 290 -2 1 1625 247 277 0 170 chr5 136434813 136434880 -16102379 + ID4_ SINE ID 1 59 -24 1 1625 1422 74 5 5 chr5 136434880 136435070 -16102189 - B2_Mm1a SINE B2 -1 192 3 1 1625 247 277 0 170 chr5 136435070 136435102 -16102157 + ID4_ SINE ID 60 83 0 1 1625 542 200 15 111 chr5 136435227 136435362 -16101897 + B1_Mur4 SINE Alu 29 150 0 1 1625 277 279 47 0 chr5 136435422 136435508 -16101751 - PB1D10 SINE Alu -19 98 9 1 1625 353 240 13 0 chr5 136435545 136435620 -16101639 - ID_B1 SINE B4 -19 205 130 1 1625 276 293 0 75 chr5 136435730 136435837 -16101422 - PB1D9 SINE Alu -21 99 1 1 1625 678 214 40 0 chr5 136437266 136437392 -16099867 + B1_Mur1 SINE Alu 2 132 -17 1 1625 404 254 53 26 chr5 136437512 136437625 -16099634 - PB1D10 SINE Alu -1 116 1 1 1625 395 221 67 50 chr5 136439427 136439546 -16097713 - B1_Mur1 SINE Alu 0 149 29 1 1625 556 193 37 141 chr5 136439475 136439497 -16097762 + B4 SINE B4 68 213 -79 1 1625 1045 37 0 50 chr5 136439497 136439638 -16097621 + B1_Mus1 SINE Alu 2 135 -13 1 1625 186 71 0 0 chr5 136439638 136439666 -16097593 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1 1625 1058 75 13 33 chr5 136439840 136439991 -16097268 - B1_Mus1 SINE Alu 0 148 1 1 1625 560 134 91 20 chr5 136440208 136440307 -16096952 + B1_Mur4 SINE Alu 24 129 -21 1 1625 207 0 0 0 chr5 136440662 136440685 -16096574 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1625 1235 48 0 0 chr5 136440685 136440830 -16096429 - B1_Mus1 SINE Alu -3 145 1 1 1625 484 303 9 0 chr5 136440873 136440982 -16096277 - ID_B1 SINE B4 -104 120 11 1 1625 23 0 0 0 chr5 136442265 136442288 -16094971 + AT_rich Low_complexity Low_complexity 1 23 0 1 1625 1273 34 7 0 chr5 136442288 136442434 -16094825 - B1_Mm SINE Alu 0 147 1 1 1625 634 201 192 72 chr5 136442631 136442824 -16094435 - B3 SINE B2 0 216 1 1 1625 1021 192 91 0 chr5 136442828 136443026 -16094233 - B3 SINE B2 0 216 1 1 1625 326 289 0 0 chr5 136443256 136443339 -16093920 + ID_B1 SINE B4 88 170 -54 1 1625 549 0 0 0 chr5 136443352 136443413 -16093846 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1 1625 351 225 0 0 chr5 136443464 136443532 -16093727 + ID4_ SINE ID 12 79 -73 1 1625 207 0 0 0 chr5 136443917 136443940 -16093319 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1625 23 68 0 0 chr5 136444416 136444460 -16092799 + AT_rich Low_complexity Low_complexity 1 44 0 1 1625 764 137 8 8 chr5 136444495 136444620 -16092639 - B1_Mur3 SINE Alu -16 133 9 1 1625 871 182 56 60 chr5 136444770 136444986 -16092273 - B3 SINE B2 0 216 2 1 1625 1389 68 15 30 chr5 136444990 136445187 -16092072 - B2_Mm2 SINE B2 0 195 2 1 1625 409 272 40 0 chr5 136445205 136445330 -16091929 - ID_B1 SINE B4 -1 223 94 1 1625 374 315 13 20 chr5 136445349 136445498 -16091761 - RSINE1 SINE B4 -17 148 1 1 1625 189 0 0 0 chr5 136445520 136445541 -16091718 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1 1625 389 189 242 0 chr5 136445541 136445636 -16091623 - B1_Mur4 SINE Alu -11 139 22 1 1625 1193 41 0 0 chr5 136445642 136445788 -16091471 + B1_Mm SINE Alu 2 147 0 1 203 787 191 0 7 chr5 136445836 136445978 -16091281 - ID_B1 SINE B4 0 224 84 1 1626 360 291 29 50 chr5 136446381 136446528 -16090731 + ZP3AR Satellite Satellite 1 143 -28 1 1626 292 279 28 6 chr5 136446496 136446600 -16090659 + ID4_ SINE ID 6 110 -42 1 1626 202 159 0 64 chr5 136446769 136446816 -16090443 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1 1626 917 117 21 0 chr5 136446820 136446965 -16090294 - B1_Mur4 SINE Alu 0 150 3 1 1626 244 339 9 0 chr5 136446987 136447102 -16090157 + (TG)n Simple_repeat Simple_repeat 1 116 0 1 1626 626 286 99 0 chr5 136447173 136447365 -16089894 - ID_B1 SINE B4 0 224 14 1 1626 1178 48 0 0 chr5 136447417 136447564 -16089695 - B1_Mm SINE Alu 0 147 1 1 1626 477 196 9 53 chr5 136447589 136447702 -16089557 - B1_Mur2 SINE Alu 0 149 42 1 1626 326 197 15 29 chr5 136447712 136447780 -16089479 + B4A SINE B4 205 271 -21 1 1626 220 261 14 14 chr5 136447794 136447831 -16089428 + ID_B1 SINE B4 88 124 -100 1 1626 444 19 0 0 chr5 136447831 136447884 -16089375 + (CA)n Simple_repeat Simple_repeat 2 54 0 1 1626 220 261 14 14 chr5 136447884 136447916 -16089343 + ID_B1 SINE B4 125 156 -68 1 1626 499 288 73 11 chr5 136447921 136448100 -16089159 + B3 SINE B2 27 216 0 1 1626 297 233 17 0 chr5 136448113 136448173 -16089086 + ID_B1 SINE B4 143 203 -21 1 1626 366 291 8 57 chr5 136449169 136449293 -16087966 - PB1D9 SINE Alu -2 118 1 1 1626 371 279 18 46 chr5 136449185 136449294 -16087965 - ID_B1 SINE B4 -38 186 81 1 1626 802 243 53 0 chr5 136449319 136449508 -16087751 - B3 SINE B2 -4 212 14 1 1626 567 257 76 0 chr5 136449848 136449992 -16087267 + RSINE1 SINE B4 5 159 -6 1 1626 315 0 0 0 chr5 136450080 136450115 -16087144 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1626 251 246 0 0 chr5 136450548 136450609 -16086650 + B1F SINE Alu 78 138 -11 1 1626 248 290 0 14 chr5 136450662 136450732 -16086527 + RSINE1 SINE B4 12 80 -85 1 1626 802 124 12 105 chr5 136450745 136450796 -16086463 + B1_Mur2 SINE Alu 3 53 -96 1 1626 1262 85 16 0 chr5 136450796 136450985 -16086274 + B2_Mm1a SINE B2 1 192 -1 1 1626 802 124 12 105 chr5 136450985 136451095 -16086164 + B1_Mur2 SINE Alu 54 149 0 1 1626 813 254 16 0 chr5 136451152 136451345 -16085914 - B3 SINE B2 -19 197 2 1 1626 439 284 26 0 chr5 136451391 136451507 -16085752 - B3 SINE B2 -90 126 8 1 1626 737 101 25 8 chr5 136451501 136451621 -16085638 - B1_Mus1 SINE Alu -21 127 6 1 1626 507 246 47 72 chr5 136451639 136451661 -16085598 - B2_Mm2 SINE B2 -5 190 169 1 1626 327 49 0 0 chr5 136451661 136451702 -16085557 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1626 723 240 24 7 chr5 136451702 136451872 -16085387 - B3A SINE B2 -25 173 3 1 1626 263 291 25 12 chr5 136451882 136451962 -16085297 - B4 SINE B4 -209 83 3 1 1626 323 301 29 0 chr5 136451981 136452084 -16085175 - PB1D10 SINE Alu -1 116 11 1 1626 1641 158 56 28 chr5 136452334 136452724 -16084535 + RMER17C LTR ERVK 10 410 0 1 1626 540 148 178 0 chr5 136453244 136453345 -16083914 - B1_Mur1 SINE Alu -4 145 27 1 1626 243 0 0 0 chr5 136453356 136453383 -16083876 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1626 343 138 169 0 chr5 136453383 136453448 -16083811 - PB1D9 SINE Alu -10 110 35 1 1626 298 271 0 0 chr5 136453451 136453521 -16083738 + PB1D10 SINE Alu 34 103 -14 1 1626 291 306 11 34 chr5 136453599 136453687 -16083572 + PB1 SINE Alu 42 127 0 1 1626 198 0 0 0 chr5 136453687 136453709 -16083550 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1 1626 516 294 6 24 chr5 136453762 136453929 -16083330 + RSINE1 SINE B4 2 165 0 1 1626 543 219 57 21 chr5 136453957 136454097 -16083162 + B1F SINE Alu 5 149 0 1 1626 409 306 6 109 chr5 136454102 136454141 -16083118 + U1 snRNA snRNA 1 39 -126 1 1626 348 24 0 0 chr5 136454141 136454182 -16083077 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1626 409 306 6 109 chr5 136454182 136454307 -16082952 + U1 snRNA snRNA 40 147 -18 1 1626 673 152 55 48 chr5 136454361 136454506 -16082753 + B1_Mur4 SINE Alu 5 150 0 1 1626 315 71 0 0 chr5 136454510 136454552 -16082707 + (TA)n Simple_repeat Simple_repeat 2 43 0 1 1626 252 289 21 86 chr5 136454919 136455059 -16082200 + ID_B1 SINE B4 94 224 0 1 1626 186 209 0 0 chr5 136455059 136455102 -16082157 + GA-rich Low_complexity Low_complexity 1 43 0 1 1626 231 36 0 0 chr5 136455103 136455131 -16082128 + (GGAAA)n Simple_repeat Simple_repeat 3 30 0 1 1626 1437 76 19 0 chr5 136455148 136455472 -16081787 + ZP3AR Satellite Satellite 1 330 -1 1 1626 623 181 7 110 chr5 136455507 136455662 -16081597 + B1_Mus2 SINE Alu 3 141 -6 1 1626 242 128 0 114 chr5 136455665 136455753 -16081506 + A-rich Low_complexity Low_complexity 3 80 0 1 1626 458 163 99 30 chr5 136456544 136456645 -16080614 - PB1D9 SINE Alu -4 116 9 1 1626 249 270 41 50 chr5 136456564 136456685 -16080574 - MT2B LTR ERVL -351 250 131 1 1626 379 289 17 9 chr5 136456791 136456906 -16080353 + PB1D10 SINE Alu 1 116 -1 1 1626 235 292 0 15 chr5 136456943 136457009 -16080250 - ID4_ SINE ID -8 75 11 1 1626 180 77 0 0 chr5 136457062 136457088 -16080171 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1626 1123 48 0 14 chr5 136457088 136457236 -16080023 - B1_Mm SINE Alu 0 147 2 1 1626 611 296 68 15 chr5 136457370 136457576 -16079683 + ID_B1 SINE B4 2 218 -6 1 1626 918 101 36 0 chr5 136458025 136458164 -16079095 - B1_Mus1 SINE Alu 0 148 5 1 1626 275 288 12 12 chr5 136458242 136458323 -16078936 - B3 SINE B2 -86 130 50 1 1626 269 228 132 15 chr5 136458843 136458942 -16078317 - PB1D10 SINE Alu -10 110 1 1 1626 414 233 66 8 chr5 136458945 136459063 -16078196 - B1_Mus1 SINE Alu 0 117 1 1 1626 309 252 49 90 chr5 136459063 136459108 -16078151 - MT2B LTR ERVL -440 161 123 1 1626 247 288 107 25 chr5 136459264 136459385 -16077874 - ID_B1 SINE B4 -1 223 93 1 1626 385 265 58 19 chr5 136459291 136459395 -16077864 - B1_Mus1 SINE Alu -38 110 3 1 1626 599 256 89 51 chr5 136459426 136459640 -16077619 - ID_B1 SINE B4 0 224 3 1 1626 234 0 0 0 chr5 136460600 136460626 -16076633 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1626 248 189 132 0 chr5 136460626 136460679 -16076580 - B1F SINE Alu -88 61 2 1 1626 511 171 89 9 chr5 136460772 136460884 -16076375 + B3 SINE B2 6 126 -90 1 1626 36 0 0 0 chr5 136461023 136461059 -16076200 + AT_rich Low_complexity Low_complexity 1 36 0 1 1626 1035 79 0 0 chr5 136461059 136461198 -16076061 - B1_Mus1 SINE Alu 0 148 10 1 1626 361 165 12 28 chr5 136461239 136461327 -16075932 - B1_Mm SINE Alu 0 150 60 1 1626 847 186 112 15 chr5 136461778 136461975 -16075284 + B3 SINE B2 1 216 0 1 1626 499 209 6 178 chr5 136462022 136462191 -16075068 + B1_Mur1 SINE Alu 10 149 0 1 1626 1148 41 0 13 chr5 136462248 136462397 -16074862 + B1_Mus2 SINE Alu 1 147 0 1 1626 222 37 0 0 chr5 136462397 136462424 -16074835 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1626 416 212 202 9 chr5 136462620 136462734 -16074525 - B1F2 SINE Alu -5 144 9 1 1626 248 262 164 47 chr5 136462734 136462745 -16074514 - ID_B1 SINE B4 -2 219 80 1 1626 240 32 0 0 chr5 136462745 136462765 -16074494 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1626 1127 68 7 0 chr5 136462765 136462912 -16074347 - B1_Mus1 SINE Alu 0 148 1 1 1626 240 32 0 0 chr5 136462912 136462922 -16074337 + (T)n Simple_repeat Simple_repeat 1 10 0 1 1626 551 177 143 23 chr5 136462922 136463055 -16074204 - B1_Mur1 SINE Alu 0 149 1 1 1626 331 217 172 11 chr5 136463787 136463880 -16073379 + PB1D7 SINE Alu 12 119 -1 1 1626 1450 64 0 18 chr5 136463861 136464155 -16073104 + ZP3AR Satellite Satellite 1 288 0 1 1626 246 268 0 47 chr5 136464155 136464241 -16073018 + ID4 SINE ID 1 82 -1 1 1626 306 241 0 0 chr5 136464528 136464673 -16072586 + G-rich Low_complexity Low_complexity 3 147 0 1 1626 236 288 49 12 chr5 136464973 136464987 -16072272 - B4A SINE B4 -123 169 86 1 1626 295 269 0 0 chr5 136464987 136465054 -16072205 - B1_Mur4 SINE Alu -83 67 1 1 1626 311 221 64 13 chr5 136465066 136465144 -16072115 - ID4 SINE ID 0 83 2 1 1626 363 306 28 9 chr5 136465144 136465253 -16072006 - ID_B1 SINE B4 -2 222 112 1 1626 226 240 20 0 chr5 136465470 136465520 -16071739 + ID4_ SINE ID 2 52 -31 1 1626 521 177 10 0 chr5 136465779 136465875 -16071384 + B1_Mus2 SINE Alu 49 145 -2 1 1626 1212 84 73 0 chr5 136465877 136466055 -16071204 + B2_Mm1t SINE B2 2 192 -1 1 1626 374 281 28 46 chr5 136466076 136466184 -16071075 + RSINE1 SINE B4 30 135 -30 1 1626 623 111 0 0 chr5 136466209 136466299 -16070960 + 4.5SRNA scRNA scRNA 1 90 -4 1 1626 391 289 45 81 chr5 136466328 136466550 -16070709 - B3 SINE B2 -2 214 1 1 1626 911 129 7 0 chr5 136466849 136466989 -16070270 + B1_Mus1 SINE Alu 8 148 0 1 1626 317 322 19 44 chr5 136466851 136467010 -16070249 + B4A SINE B4 94 248 -44 1 1626 395 233 35 0 chr5 136467185 136467271 -16069988 + RSINE1 SINE B4 46 134 -31 1 1626 395 38 19 0 chr5 136467282 136467335 -16069924 + (GA)n Simple_repeat Simple_repeat 2 55 0 1 1626 978 113 14 0 chr5 136467340 136467481 -16069778 - B1_Mus1 SINE Alu -5 143 1 1 1626 377 154 15 15 chr5 136467481 136467547 -16069712 - B1_Mm SINE Alu -46 101 36 1 1626 264 270 0 0 chr5 136467547 136467610 -16069649 + ID_B1 SINE B4 130 192 -32 1 1626 1046 58 15 0 chr5 136467868 136468005 -16069254 + B1_Mus1 SINE Alu 1 139 -9 1 1626 558 234 43 30 chr5 136468072 136468305 -16068954 + Lx9 LINE L1 7409 7644 0 1 1626 1125 83 65 22 chr5 136468422 136468606 -16068653 - B2_Mm1a SINE B2 0 193 2 1 1626 316 181 17 8 chr5 136468758 136468843 -16068416 + B1F SINE Alu 37 149 0 1 1626 287 227 30 0 chr5 136469147 136469213 -16068046 + ID SINE ID 2 69 -155 1 1626 244 306 70 53 chr5 136469254 136469368 -16067891 + PB1D10 SINE Alu 1 116 -1 1 1626 234 224 0 75 chr5 136469800 136469853 -16067406 - BC1_Mm scRNA scRNA -90 62 14 1 1626 194 0 39 0 chr5 136469891 136469917 -16067342 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1626 1205 34 0 0 chr5 136469917 136470055 -16067204 - B1_Mus2 SINE Alu -8 139 2 1 1626 457 271 0 9 chr5 136470118 136470226 -16067033 + ID_B1 SINE B4 102 208 -16 1 1626 227 278 69 0 chr5 136470259 136470331 -16066928 + ID4 SINE ID 4 80 -3 1 1626 620 264 25 19 chr5 136470339 136470501 -16066758 + RSINE1 SINE B4 1 163 -2 1 1626 215 368 26 46 chr5 136470341 136470535 -16066724 + B2_Mm2 SINE B2 2 191 -4 1 1626 257 346 50 0 chr5 136471512 136471613 -16065646 + PB1D10 SINE Alu 1 106 -11 1 1626 396 274 0 25 chr5 136471641 136471761 -16065498 + PB1D10 SINE Alu 1 117 0 1 1626 871 249 137 12 chr5 136472399 136472647 -16064612 + B4 SINE B4 8 286 -6 1 1626 225 0 0 0 chr5 136472653 136472678 -16064581 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1626 252 236 97 0 chr5 136472842 136472914 -16064345 + ID4_ SINE ID 2 80 -3 1 1626 22 35 0 0 chr5 136472915 136472944 -16064315 + AT_rich Low_complexity Low_complexity 1 29 0 1 1626 617 229 30 0 chr5 136472965 136473096 -16064163 - RSINE1 SINE B4 -29 136 2 1 1626 300 275 22 11 chr5 136473142 136473234 -16064025 + RSINE1 SINE B4 35 127 -38 1 1626 321 216 129 0 chr5 136473303 136473395 -16063864 + B1F SINE Alu 2 101 -48 1 1626 267 271 93 54 chr5 136473395 136473424 -16063835 + MT2B2 LTR ERVL 179 287 -297 1 1626 570 241 36 21 chr5 136473401 136473541 -16063718 + B1F SINE Alu 7 148 -1 1 1626 807 246 5 0 chr5 136474115 136474302 -16062957 + B3A SINE B2 3 190 -8 1 1626 213 217 0 0 chr5 136474302 136474348 -16062911 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 1 1626 384 274 98 117 chr5 136474391 136474446 -16062813 - MT2B LTR ERVL -173 428 373 1 1626 728 224 123 15 chr5 136474446 136474641 -16062618 + ID_B1 SINE B4 1 216 -8 1 1626 384 274 98 117 chr5 136474641 136474698 -16062561 - MT2B LTR ERVL -229 372 325 1 1626 216 0 0 0 chr5 136474698 136474722 -16062537 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1626 384 274 98 117 chr5 136474722 136474738 -16062521 - MT2B LTR ERVL -277 324 179 1 1626 751 136 48 0 chr5 136474738 136474863 -16062396 - B1_Mus2 SINE Alu -2 145 15 1 1626 461 259 20 48 chr5 136474861 136474991 -16062268 + B4 SINE B4 106 231 -61 1 1626 566 218 91 29 chr5 136474991 136475175 -16062084 + B3A SINE B2 2 194 -1 1 1626 246 299 13 13 chr5 136475164 136475242 -16062017 + B4A SINE B4 215 292 0 1 1626 340 269 58 58 chr5 136475343 136475481 -16061778 - B1F2 SINE Alu 0 149 12 1 1626 288 176 0 0 chr5 136475821 136475889 -16061370 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1626 445 268 254 105 chr5 136475916 136476154 -16061105 - B4A SINE B4 -4 288 16 1 1626 1287 92 11 0 chr5 136476269 136476454 -16060805 + B2_Mm1a SINE B2 2 188 -5 1 1626 586 276 29 59 chr5 136476586 136476737 -16060522 - ID_B1 SINE B4 0 224 76 1 1626 1279 124 0 5 chr5 136476737 136476932 -16060327 - B2_Mm2 SINE B2 0 195 2 1 1626 261 0 0 0 chr5 136476942 136476971 -16060288 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1 1626 586 276 29 59 chr5 136476971 136477012 -16060247 - ID SINE ID -158 66 27 1 1626 25 0 0 0 chr5 136477074 136477099 -16060160 + AT_rich Low_complexity Low_complexity 1 25 0 1 1626 291 28 0 0 chr5 136477107 136477143 -16060116 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1626 334 325 97 0 chr5 136477147 136477261 -16059998 - RSINE1 SINE B4 -30 135 11 1 1626 287 295 106 8 chr5 136477398 136477521 -16059738 - RSINE1 SINE B4 -21 144 10 1 1626 944 131 0 0 chr5 136477526 136477663 -16059596 + B1_Mur3 SINE Alu 3 139 -10 1 1626 207 0 0 0 chr5 136477663 136477686 -16059573 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1626 270 295 40 97 chr5 136477818 136477942 -16059317 - PB1D10 SINE Alu 0 117 1 1 1626 225 0 0 0 chr5 136477958 136477983 -16059276 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1 1626 237 288 14 0 chr5 136478009 136478082 -16059177 - ID4_ SINE ID -9 74 1 1 1626 1131 174 31 19 chr5 136478109 136478422 -16058837 - ZP3AR Satellite Satellite -1 316 1 1 1626 316 284 0 0 chr5 136478722 136478803 -16058456 - ID4 SINE ID -1 82 2 1 1626 236 254 17 0 chr5 136478807 136478866 -16058393 + ID_B1 SINE B4 98 157 -67 1 1626 703 156 21 43 chr5 136479249 136479390 -16057869 - B1_Mus1 SINE Alu 0 148 11 1 1626 333 216 67 76 chr5 136479297 136479402 -16057857 - MT2B LTR ERVL -337 264 161 1 1626 249 33 0 0 chr5 136479436 136479466 -16057793 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1626 189 0 0 0 chr5 136479466 136479486 -16057773 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1 1626 672 261 3 102 chr5 136479499 136479823 -16057436 - B4A SINE B4 0 292 1 1 1626 184 59 0 56 chr5 136479826 136479862 -16057397 + (TTTTA)n Simple_repeat Simple_repeat 5 38 0 1 1626 701 184 232 0 chr5 136479867 136480035 -16057224 - B3 SINE B2 -9 207 1 1 1626 988 191 57 0 chr5 136480221 136480415 -16056844 - B3 SINE B2 -11 205 1 1 1626 421 264 18 9 chr5 136480569 136480680 -16056579 - RSINE1 SINE B4 -4 161 50 1 1626 274 160 20 0 chr5 136480962 136481012 -16056247 + B1F SINE Alu 96 146 -3 1 1626 281 225 166 21 chr5 136481021 136481154 -16056105 + B3A SINE B2 37 195 -3 1 1626 281 265 184 0 chr5 136481162 136481260 -16055999 + PB1D7 SINE Alu 1 116 -4 1 1626 493 286 82 0 chr5 136481632 136481779 -16055480 - RSINE1 SINE B4 -6 159 1 1 1626 287 296 37 0 chr5 136482699 136482780 -16054479 - PB1D10 SINE Alu -1 116 33 1 1626 245 316 79 30 chr5 136482723 136482809 -16054450 - ID_B1 SINE B4 -54 170 79 1 1626 198 0 0 0 chr5 136482809 136482831 -16054428 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1626 245 316 79 30 chr5 136482831 136482845 -16054414 - ID SINE ID -146 78 65 1 1626 793 255 55 44 chr5 136482847 136483122 -16054137 - B4A SINE B4 -13 279 2 1 1626 303 270 71 18 chr5 136483138 136483251 -16054008 - PB1D9 SINE Alu -1 119 1 1 1626 254 130 0 0 chr5 136483834 136483880 -16053379 - ZP3AR Satellite Satellite -118 94 49 1 1626 485 169 189 0 chr5 136484002 136484124 -16053135 - B1_Mur2 SINE Alu 0 150 5 1 1626 359 191 0 136 chr5 136484044 136484147 -16053112 - MT2B LTR ERVL -361 240 152 1 1626 702 295 123 8 chr5 136484207 136484467 -16052792 - B4A SINE B4 0 292 3 1 1626 3143 164 104 26 chr5 136484894 136485562 -16051697 - RMER1B Other Other -5 1061 15 1 1626 975 128 0 0 chr5 136485666 136485814 -16051445 + B1_Mus1 SINE Alu 1 148 0 1 1626 819 209 13 100 chr5 136486437 136486676 -16050583 + ID_B1 SINE B4 2 219 -5 1 1626 222 191 0 0 chr5 136486838 136486880 -16050379 + B1F SINE Alu 20 61 -88 1 1626 1066 43 50 0 chr5 136487058 136487198 -16050061 - B1_Mus2 SINE Alu 0 147 1 1 1626 370 215 0 12 chr5 136487323 136487403 -16049856 + ID4_ SINE ID 1 79 -4 1 1626 453 302 6 16 chr5 136487407 136487630 -16049629 + (CA)n Simple_repeat Simple_repeat 1 220 0 1 1626 376 264 18 35 chr5 136487568 136487737 -16049522 + (CATA)n Simple_repeat Simple_repeat 2 167 0 1 1626 436 200 264 45 chr5 136488721 136488899 -16048360 - ID_B1 SINE B4 -7 217 1 1 1626 233 89 22 0 chr5 136488903 136488948 -16048311 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 1 1626 1088 69 7 0 chr5 136488957 136489102 -16048157 - B1_Mus1 SINE Alu -2 146 1 1 1626 372 290 57 0 chr5 136489117 136489253 -16048006 - B1F SINE Alu 0 149 7 1 1626 236 337 35 0 chr5 136489577 136489663 -16047596 - PB1D10 SINE Alu -22 95 7 1 1626 769 169 162 5 chr5 136489709 136489894 -16047365 - B3 SINE B2 -2 214 1 1 1626 362 86 17 0 chr5 136489933 136489991 -16047268 - B1_Mm SINE Alu -5 142 84 1 1626 1094 54 0 20 chr5 136490004 136490155 -16047104 - B1_Mus1 SINE Alu 0 148 1 1 1626 249 109 0 0 chr5 136490165 136490211 -16047048 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1626 378 237 43 0 chr5 136490259 136490352 -16046907 - RSINE1 SINE B4 -58 107 11 1 1626 218 220 0 33 chr5 136490408 136490469 -16046790 - B1F SINE Alu 0 149 91 1 1626 581 273 56 6 chr5 136490672 136490834 -16046425 + ZP3AR Satellite Satellite 22 191 -21 1 1626 330 247 0 51 chr5 136491255 136491353 -16045906 + CT-rich Low_complexity Low_complexity 1 93 0 1 1626 321 100 0 0 chr5 136491864 136491914 -16045345 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1626 421 230 11 0 chr5 136491914 136492001 -16045258 - RSINE1 SINE B4 -41 124 37 1 1626 293 338 56 28 chr5 136492437 136492580 -16044679 - Tigger15a DNA TcMar -21 694 548 1 1626 387 308 0 0 chr5 136492650 136492741 -16044518 - RMER30 DNA MER1_type 0 202 112 1 1626 755 228 60 0 chr5 136492809 136492976 -16044283 - B3 SINE B2 -39 177 1 1 1626 252 0 0 0 chr5 136493004 136493032 -16044227 + (TTTTTG)n Simple_repeat Simple_repeat 5 32 0 1 1626 755 106 0 24 chr5 136493032 136493158 -16044101 - B1_Mus1 SINE Alu 0 148 26 1 1626 287 352 109 0 chr5 136493171 136493299 -16043960 - RSINE1 SINE B4 0 165 24 1 1626 493 185 176 0 chr5 136493304 136493423 -16043836 - B1F SINE Alu -8 141 2 1 1626 702 227 14 0 chr5 136493622 136493763 -16043496 - B1_Mur2 SINE Alu -6 143 1 1 1626 611 217 36 7 chr5 136493828 136493967 -16043292 - RSINE1 SINE B4 -21 144 2 1 1626 423 252 40 47 chr5 136494868 136495018 -16042241 - B1F2 SINE Alu 0 149 1 1 1626 278 294 67 29 chr5 136495100 136495205 -16042054 + PB1D10 SINE Alu 1 109 -8 1 1626 521 284 108 10 chr5 136495214 136495417 -16041842 + ID_B1 SINE B4 2 224 0 1 1626 801 142 42 14 chr5 136495621 136495764 -16041495 - B1_Mus1 SINE Alu 0 148 2 1 1626 333 239 14 0 chr5 136496228 136496299 -16040960 - ID4 SINE ID 0 83 12 1 1626 337 250 122 26 chr5 136496372 136496487 -16040772 - RSINE1 SINE B4 -29 136 11 1 1626 216 271 14 28 chr5 136496493 136496565 -16040694 - B1F SINE Alu -1 148 78 1 1626 443 239 0 0 chr5 136496565 136496657 -16040602 - B1_Mur1 SINE Alu -18 131 40 1 1626 216 0 0 0 chr5 136496685 136496709 -16040550 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1626 368 214 14 13 chr5 136496709 136496795 -16040464 - B4A SINE B4 -76 216 136 1 1626 22 35 0 0 chr5 136496889 136496918 -16040341 + AT_rich Low_complexity Low_complexity 1 29 0 1 1626 213 221 43 29 chr5 136497147 136497217 -16040042 - PB1D10 SINE Alu -34 83 13 1 1626 339 121 0 0 chr5 136497395 136497453 -16039806 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1626 683 278 57 31 chr5 136498038 136498231 -16039028 - B3A SINE B2 0 198 1 1 1626 803 279 21 38 chr5 136498265 136498556 -16038703 - B4 SINE B4 -2 290 5 1 1626 308 320 98 0 chr5 136498633 136498755 -16038504 - RSINE1 SINE B4 -30 135 2 1 1626 335 176 38 49 chr5 136498763 136498861 -16038398 - B1_Mus2 SINE Alu -7 140 13 1 1626 392 333 53 0 chr5 136498872 136499022 -16038237 - ID_B1 SINE B4 -65 159 2 1 1626 342 249 31 88 chr5 136499030 136499176 -16038083 - PB1D10 SINE Alu 0 149 24 1 1626 402 74 0 0 chr5 136499185 136499239 -16038020 + (TCTCCC)n Simple_repeat Simple_repeat 2 55 0 1 1626 28 29 0 0 chr5 136499370 136499405 -16037854 + AT_rich Low_complexity Low_complexity 1 35 0 1 1626 470 246 17 43 chr5 136499405 136499520 -16037739 - PB1D9 SINE Alu -7 113 2 1 1626 417 174 58 0 chr5 136499913 136499999 -16037260 - ID_B1 SINE B4 -1 223 133 1 1626 523 238 31 8 chr5 136500000 136500127 -16037132 - ID_B1 SINE B4 -93 131 2 1 1626 588 264 60 11 chr5 136500494 136500678 -16036581 - MTEb LTR MaLR 0 379 187 2 1626 539 298 86 5 chr5 136501557 136501766 -16035493 - MTE2b LTR MaLR -134 245 20 3 1626 345 252 19 46 chr5 136502744 136502852 -16034407 - ID_B1 SINE B4 -115 109 5 4 1626 210 105 0 0 chr5 136503343 136503381 -16033878 + (TG)n Simple_repeat Simple_repeat 2 39 0 5 1626 180 0 0 0 chr5 136504275 136504295 -16032964 + (CCTG)n Simple_repeat Simple_repeat 4 23 0 6 1626 374 230 69 20 chr5 136505163 136505265 -16031994 + PB1D10 SINE Alu 10 116 -1 7 1626 368 139 65 65 chr5 136505330 136505407 -16031852 + ZP3AR Satellite Satellite 19 95 -117 8 1626 288 179 239 0 chr5 136505407 136505474 -16031785 + ID4 SINE ID 1 83 0 9 1626 213 106 64 0 chr5 136507633 136507680 -16029579 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 1 1626 250 244 153 35 chr5 136507741 136507826 -16029433 - RSINE1 SINE B4 -67 98 4 1 1626 284 230 182 3 chr5 136509068 136509105 -16028154 - PB1D7 SINE Alu -8 112 2 1 1626 289 206 16 8 chr5 136509105 136509179 -16028080 - B4A SINE B4 -70 154 84 1 1626 397 345 58 36 chr5 136509201 136509475 -16027784 - Lx8 LINE L1 -39 7434 7155 1 1626 338 103 45 36 chr5 136509479 136509590 -16027669 + CT-rich Low_complexity Low_complexity 6 117 0 1 1626 385 181 84 0 chr5 136509627 136509710 -16027549 - Lx8 LINE L1 -396 7077 6988 1 1626 393 256 166 18 chr5 136510011 136510174 -16027085 + B3A SINE B2 1 187 -11 1 1626 553 136 41 20 chr5 136510194 136510292 -16026967 - B1_Mur4 SINE Alu 0 150 51 1 1626 237 242 0 46 chr5 136510256 136510321 -16026938 - RLTR25B LTR ERVK -543 485 424 1 1626 557 292 64 6 chr5 136510321 136510493 -16026766 + B3A SINE B2 1 182 -16 1 1626 205 182 0 0 chr5 136510526 136510570 -16026689 + A-rich Low_complexity Low_complexity 1 44 0 2 1626 387 264 196 28 chr5 136510854 136511068 -16026191 + L1MB7 LINE L1 5494 5743 -441 2 1626 789 201 190 5 chr5 136511257 136511595 -16025664 + MTC LTR MaLR 10 421 0 2 1626 614 143 0 19 chr5 136511606 136511713 -16025546 + B1_Mur3 SINE Alu 5 109 -40 2 1626 504 279 0 8 chr5 136511706 136511829 -16025430 + RSINE1 SINE B4 23 144 -21 2 1626 332 260 31 20 chr5 136511939 136512037 -16025222 + B1F SINE Alu 43 141 -8 2 1626 382 230 46 0 chr5 136512149 136512236 -16025023 + BC1_Mm scRNA scRNA 6 96 -56 2 1626 333 339 70 6 chr5 136512328 136512500 -16024759 + L1MB7 LINE L1 5917 6099 -85 2 1626 210 355 13 13 chr5 136512530 136512607 -16024652 - ID4 SINE ID -2 81 5 2 1626 1087 153 20 0 chr5 136512649 136512845 -16024414 + ZP3AR Satellite Satellite 13 212 0 2 1626 501 17 0 0 chr5 136512846 136512904 -16024355 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1626 1623 165 110 0 chr5 136512904 136513232 -16024027 + ORR1D1 LTR MaLR 6 369 -5 3 1626 442 281 39 15 chr5 136513307 136513437 -16023822 + B1F2 SINE Alu 9 141 -8 3 1626 432 0 0 0 chr5 136513481 136513529 -16023730 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 1626 1061 109 0 7 chr5 136513602 136513750 -16023509 + B1_Mus1 SINE Alu 2 148 0 3 1626 405 219 0 12 chr5 136513773 136513856 -16023403 + ID_B1 SINE B4 143 224 0 3 1626 800 76 3 0 chr5 136513882 136513998 -16023261 + B1_Mus2 SINE Alu 21 136 -11 3 1626 181 0 69 0 chr5 136513998 136514027 -16023232 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 3 1626 641 204 202 6 chr5 136515234 136515397 -16021862 - ID_B1 SINE B4 0 224 30 3 1626 715 126 7 49 chr5 136515396 136515538 -16021721 - URR1A DNA MER1_type -10 216 81 3 1626 560 176 0 0 chr5 136515715 136515817 -16021442 - RSINE1 SINE B4 -34 131 30 3 1626 180 313 48 57 chr5 136516164 136516269 -16020990 + MIR SINE MIR 42 145 -117 4 1626 251 167 45 191 chr5 136516286 136516375 -16020884 + U4 snRNA snRNA 1 76 -69 4 1626 382 228 163 16 chr5 136516393 136516522 -16020737 + B1F2 SINE Alu 2 149 0 4 1626 500 221 284 23 chr5 136516533 136516709 -16020550 + ID_B1 SINE B4 3 224 0 4 1626 724 112 16 8 chr5 136517333 136517459 -16019800 - ZP3AR Satellite Satellite -44 168 42 4 1626 320 291 100 0 chr5 136517468 136517578 -16019681 - PB1 SINE Alu -2 125 5 4 1626 715 174 7 14 chr5 136517846 136517992 -16019267 - ZP3AR Satellite Satellite -24 188 44 4 1626 1303 20 0 0 chr5 136518006 136518153 -16019106 - B1_Mm SINE Alu 0 147 1 4 1626 425 258 48 0 chr5 136518171 136518295 -16018964 - ID_B1 SINE B4 -2 222 93 4 1626 636 256 117 15 chr5 136519140 136519346 -16017913 + B4A SINE B4 1 227 -65 4 1626 779 211 28 0 chr5 136519349 136519491 -16017768 + RSINE1 SINE B4 5 150 -15 5 1626 234 0 0 0 chr5 136519590 136519616 -16017643 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1626 397 281 17 9 chr5 136520224 136520339 -16016920 + PB1D10 SINE Alu 1 116 -1 5 1626 278 289 48 0 chr5 136521673 136521756 -16015503 + RSINE1 SINE B4 37 123 -42 5 1626 21 0 0 0 chr5 136521872 136521893 -16015366 + AT_rich Low_complexity Low_complexity 1 21 0 5 1626 207 169 16 78 chr5 136522112 136522176 -16015083 + (GGGTG)n Simple_repeat Simple_repeat 1 60 0 5 1626 183 42 0 0 chr5 136522428 136522452 -16014807 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 5 1626 348 24 0 0 chr5 136522457 136522498 -16014761 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1626 247 297 21 32 chr5 136522499 136522593 -16014666 - PB1D10 SINE Alu -11 106 14 5 1626 1073 225 0 0 chr5 136522665 136522874 -16014385 - B3 SINE B2 -6 210 2 5 1626 383 211 18 40 chr5 136522978 136523079 -16014180 + RSINE1 SINE B4 3 107 -58 6 1626 395 92 0 15 chr5 136523086 136523152 -16014107 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1626 1256 41 0 0 chr5 136523315 136523462 -16013797 + B1_Mus1 SINE Alu 1 147 -1 6 1626 401 320 8 38 chr5 136523552 136523685 -16013574 + RSINE1 SINE B4 8 136 -29 6 1626 353 222 57 214 chr5 136523741 136523779 -16013480 + B3A SINE B2 4 41 -157 6 1626 1257 54 0 0 chr5 136523779 136523927 -16013332 + B1_Mus1 SINE Alu 1 148 0 6 1626 353 222 57 214 chr5 136523927 136524117 -16013142 + B3A SINE B2 42 196 -2 6 1626 474 322 0 0 chr5 136524173 136524347 -16012912 + GA-rich Low_complexity Low_complexity 3 176 0 6 1626 519 167 0 69 chr5 136524349 136524443 -16012816 + B1F2 SINE Alu 42 133 -16 6 1626 2456 109 24 53 chr5 136524443 136524861 -16012398 + MTB_Mm LTR MaLR 2 407 0 6 1626 519 167 0 69 chr5 136524861 136524882 -16012377 + B1F2 SINE Alu 134 149 0 6 1626 660 153 14 103 chr5 136525425 136525571 -16011688 - B1_Mur1 SINE Alu -1 148 16 6 1626 421 235 62 175 chr5 136525610 136525770 -16011489 - ID_B1 SINE B4 -81 143 2 7 1626 845 206 16 64 chr5 136525728 136525915 -16011344 - ZP3AR Satellite Satellite -21 191 14 7 1626 407 294 33 8 chr5 136526118 136526238 -16011021 + RSINE1 SINE B4 26 148 -17 7 1626 1124 208 19 9 chr5 136526294 136526508 -16010751 + B3 SINE B2 1 216 0 7 1626 1136 156 0 15 chr5 136526526 136526685 -16010574 + B2_Mm2 SINE B2 2 159 -36 7 1626 258 32 0 0 chr5 136526685 136526716 -16010543 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 7 1626 1136 156 0 15 chr5 136526716 136526737 -16010522 + B2_Mm2 SINE B2 160 179 -16 7 1626 1209 62 0 7 chr5 136526737 136526884 -16010375 + B1_Mm SINE Alu 1 146 -1 7 1626 1136 156 0 15 chr5 136526884 136526898 -16010361 + B2_Mm2 SINE B2 180 193 -2 7 1626 292 361 11 5 chr5 136526944 136527049 -16010210 + PB1D7 SINE Alu 19 120 0 7 1626 325 156 26 0 chr5 136527054 136527131 -16010128 + GA-rich Low_complexity Low_complexity 2 80 0 7 1626 643 226 103 6 chr5 136528111 136528276 -16008983 + B3A SINE B2 2 182 -16 7 1626 219 36 0 0 chr5 136528326 136528354 -16008905 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1626 1396 75 37 0 chr5 136528496 136528684 -16008575 + B2_Mm2 SINE B2 1 195 0 8 1626 367 204 135 11 chr5 136528696 136528785 -16008474 + B1F SINE Alu 1 100 -49 8 1626 1428 101 7 0 chr5 136528836 136529127 -16008132 + ZP3AR Satellite Satellite 1 293 0 8 1626 286 294 118 8 chr5 136529088 136529215 -16008044 + BC1_Mm scRNA scRNA 1 141 -11 8 1626 230 320 142 7 chr5 136529403 136529551 -16007708 + ORR1D2 LTR MaLR 3 170 -200 8 1626 262 277 71 12 chr5 136529549 136529633 -16007626 - B1F SINE Alu -45 104 16 8 1626 1071 50 0 0 chr5 136529672 136529811 -16007448 - B1_Mus1 SINE Alu 0 148 10 8 1626 244 222 74 67 chr5 136529712 136529847 -16007412 - ORR1B1-int LTR MaLR -755 754 619 8 1626 865 219 68 0 chr5 136529829 136530021 -16007238 - B3 SINE B2 -3 213 9 8 1626 225 0 0 0 chr5 136530135 136530160 -16007099 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9 1626 625 173 0 9 chr5 136530220 136530331 -16006928 - ZP3AR Satellite Satellite -99 113 4 9 1626 667 232 142 5 chr5 136531156 136531368 -16005891 + ORR1E LTR MaLR 1 241 -118 9 1626 218 304 29 14 chr5 136531397 136531467 -16005792 + RSINE1 SINE B4 81 151 -14 9 1626 765 179 0 0 chr5 136531491 136531944 -16005315 + (CA)n Simple_repeat Simple_repeat 1 453 0 9 1626 978 62 0 0 chr5 136532137 136532266 -16004993 - B2_Mm2 SINE B2 -65 130 2 9 1626 892 27 0 0 chr5 136532302 136532412 -16004847 - B1_Mus1 SINE Alu -13 135 26 9 1626 213 159 0 0 chr5 136532436 136532480 -16004779 + GA-rich Low_complexity Low_complexity 1 44 0 9 1626 221 287 149 0 chr5 136532521 136532545 -16004714 - ID_B1 SINE B4 -114 110 11 9 1626 280 222 95 0 chr5 136532545 136532608 -16004651 - ID4_ SINE ID -4 79 11 9 1626 218 253 40 0 chr5 136532623 136532698 -16004561 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 1 1626 315 297 99 0 chr5 136532714 136532805 -16004454 + ID_B1 SINE B4 84 183 -41 1 1626 279 71 0 0 chr5 136533639 136533681 -16003578 + (A)n Simple_repeat Simple_repeat 1 42 0 1 1626 201 74 0 0 chr5 136533736 136533763 -16003496 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1626 400 294 119 0 chr5 136533763 136533889 -16003370 - RSINE1 SINE B4 -13 152 12 1 1626 913 160 28 0 chr5 136533987 136534131 -16003128 - B1_Mur2 SINE Alu 0 149 2 1 1626 896 120 89 72 chr5 136534143 136534323 -16002936 - B2_Mm2 SINE B2 -11 184 2 1 1626 549 252 48 14 chr5 136534417 136534562 -16002697 - B4A SINE B4 -141 151 2 1 1626 418 231 37 123 chr5 136534838 136535001 -16002258 - B4A SINE B4 -143 149 1 1 1626 524 298 45 19 chr5 136535265 136535419 -16001840 + RSINE1 SINE B4 2 159 -6 1 1626 363 121 0 0 chr5 136536271 136536329 -16000930 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 1 1626 226 250 0 0 chr5 136536377 136536425 -16000834 - ZP3AR Satellite Satellite -144 68 21 1 1626 423 307 22 32 chr5 136536437 136536622 -16000637 - B2_Mm2 SINE B2 -5 190 8 1 1626 23 33 0 0 chr5 136536626 136536656 -16000603 + AT_rich Low_complexity Low_complexity 1 30 0 1 1626 1095 167 74 32 chr5 136538043 136538260 -15998999 + URR1A DNA MER1_type 1 226 0 1 1626 347 182 143 0 chr5 136538431 136538508 -15998751 + B3A SINE B2 54 141 -57 1 1626 384 59 0 0 chr5 136538518 136538569 -15998690 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1626 219 75 36 54 chr5 136538925 136538952 -15998307 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1 1626 825 57 205 0 chr5 136538952 136539074 -15998185 - B1_Mus1 SINE Alu 0 148 2 1 1626 219 75 36 54 chr5 136539074 136539102 -15998157 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1 1626 713 236 0 7 chr5 136539165 136539314 -15997945 + B1_Mur1 SINE Alu 2 149 0 1 1626 279 141 0 0 chr5 136539359 136539423 -15997836 + (G)n Simple_repeat Simple_repeat 1 64 0 1 1626 226 331 42 84 chr5 136539433 136539467 -15997792 - B2_Mm1a SINE B2 -9 184 2 1 1626 687 276 0 32 chr5 136539467 136539624 -15997635 - RSINE1 SINE B4 -11 154 3 1 1626 225 154 0 0 chr5 136539669 136539708 -15997551 + (CAA)n Simple_repeat Simple_repeat 3 41 0 1 1626 1310 89 72 0 chr5 136540296 136540476 -15996783 - B2_Mm2 SINE B2 -1 194 2 1 1626 1065 190 76 15 chr5 136540493 136540691 -15996568 - B3 SINE B2 -6 210 1 1 1626 687 282 81 0 chr5 136540691 136540900 -15996359 - B4A SINE B4 -65 227 2 1 1626 395 206 0 58 chr5 136540904 136541007 -15996252 - PB1D10 SINE Alu -13 104 8 1 1626 396 276 57 0 chr5 136541012 136541117 -15996142 - PB1D10 SINE Alu -5 112 2 1 1626 329 61 2 0 chr5 136541186 136541233 -15996026 + B2_Mm2 SINE B2 6 53 -140 1 1626 650 223 44 6 chr5 136541240 136541398 -15995861 + B4 SINE B4 6 169 -123 1 1626 293 275 71 55 chr5 136541452 136541579 -15995680 - B3 SINE B2 0 216 88 1 1626 588 259 99 44 chr5 136541703 136541885 -15995374 + B3A SINE B2 6 197 -1 1 1626 794 147 88 0 chr5 136541893 136542029 -15995230 + B1_Mur3 SINE Alu 1 148 -1 1 1626 459 0 0 0 chr5 136542065 136542116 -15995143 + (GGA)n Simple_repeat Simple_repeat 2 52 0 1 1626 295 247 33 100 chr5 136542946 136543036 -15994223 - ID_B1 SINE B4 -8 216 133 1 1626 887 228 53 24 chr5 136543059 136543266 -15993993 - B3 SINE B2 0 216 4 1 1626 369 0 0 0 chr5 136543266 136543307 -15993952 + (TC)n Simple_repeat Simple_repeat 1 41 0 1 1626 222 128 26 0 chr5 136543307 136543346 -15993913 - B1_Mur1 SINE Alu -16 133 94 1 1626 314 138 0 17 chr5 136543396 136543455 -15993804 + CT-rich Low_complexity Low_complexity 4 61 0 1 1626 828 144 0 28 chr5 136543455 136543598 -15993661 - B1_Mm SINE Alu 0 147 9 1 1626 311 275 477 36 chr5 136543832 136543918 -15993341 + ID_B1 SINE B4 2 223 -1 1 1626 278 194 59 15 chr5 136543918 136543986 -15993273 + PB1D9 SINE Alu 48 118 -2 1 1626 207 0 0 0 chr5 136543992 136544015 -15993244 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1626 933 225 19 19 chr5 136544371 136544435 -15992824 - ID_B1 SINE B4 -4 220 157 1 1626 216 0 0 0 chr5 136544435 136544459 -15992800 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1626 1556 28 17 0 chr5 136544459 136544636 -15992623 - B2_Mm2 SINE B2 -14 181 2 1 1626 933 225 19 19 chr5 136544636 136544783 -15992476 - ID_B1 SINE B4 -68 156 9 1 1626 222 37 0 0 chr5 136545191 136545218 -15992041 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1626 224 328 0 0 chr5 136545222 136545283 -15991976 - ID4_ SINE ID -22 61 1 1 1626 1256 91 4 0 chr5 136545240 136545440 -15991819 - ZP3AR Satellite Satellite -21 200 1 1 1626 615 260 78 26 chr5 136545891 136546045 -15991214 + RSINE1 SINE B4 4 165 0 1 1626 559 312 19 0 chr5 136546171 136546325 -15990934 - RSINE1 SINE B4 -7 158 2 1 1626 644 219 0 8 chr5 136546540 136546664 -15990595 - RSINE1 SINE B4 -28 137 15 1 1626 1143 82 0 7 chr5 136546720 136546868 -15990391 + B1_Mus1 SINE Alu 1 147 -1 1 1626 212 184 80 20 chr5 136547821 136547871 -15989388 + B1F SINE Alu 92 144 -5 1 1626 698 307 5 5 chr5 136547879 136548069 -15989190 + B3A SINE B2 3 192 -6 1 1626 1277 171 134 34 chr5 136548069 136548390 -15988869 + ORR1C1 LTR MaLR 11 363 -15 1 1626 24 0 0 0 chr5 136548399 136548423 -15988836 + AT_rich Low_complexity Low_complexity 1 24 0 1 1626 767 240 0 0 chr5 136548446 136548592 -15988667 + B1_Mur1 SINE Alu 3 148 -1 1 1626 181 153 27 40 chr5 136548604 136548679 -15988580 + GA-rich Low_complexity Low_complexity 1 74 0 1 1626 1456 226 47 32 chr5 136549453 136549860 -15987399 + MTD LTR MaLR 7 419 0 1 1626 1078 84 22 11 chr5 136550048 136550228 -15987031 - ZP3AR Satellite Satellite -24 188 7 1 1626 296 268 0 12 chr5 136550249 136550332 -15986927 - B1F SINE Alu 0 149 68 1 1626 269 311 28 28 chr5 136550250 136550356 -15986903 - ID_B1 SINE B4 0 224 119 1 1626 265 196 0 0 chr5 136550358 136550404 -15986855 - MIRc SINE MIR -142 126 81 1 1626 526 307 127 30 chr5 136550405 136550762 -15986497 + MTE2a LTR MaLR 2 397 -22 1 1626 2426 118 33 62 chr5 136551210 136551575 -15985684 + MTC LTR MaLR 2 375 -46 1 1626 1681 26 5 0 chr5 136551575 136551767 -15985492 - B2_Mm1t SINE B2 0 193 1 1 1626 2426 118 33 62 chr5 136551767 136551824 -15985435 + MTC LTR MaLR 376 412 -9 1 1626 1024 238 19 19 chr5 136552008 136552269 -15984990 + ORR1D2 LTR MaLR 1 261 -109 1 1626 1359 181 125 0 chr5 136552245 136552549 -15984710 + MT2A LTR ERVL 192 533 0 1 1626 716 289 20 10 chr5 136552549 136552755 -15984504 + ID_B1 SINE B4 17 222 -70 1 1626 943 156 0 20 chr5 136552764 136552914 -15984345 + B1_Mur1 SINE Alu 1 147 -2 1 1626 247 351 84 55 chr5 136552954 136553156 -15984103 + ORSL-2b DNA Tip100 73 280 -228 1 1626 520 254 14 27 chr5 136553238 136553384 -15983875 + B1F2 SINE Alu 1 144 -5 1 1626 284 250 81 29 chr5 136553550 136553686 -15983573 - L1MB2 LINE L1 -88 6083 5941 1 1626 456 110 5 3 chr5 136553730 136553807 -15983452 + PB1D10 SINE Alu 21 99 -51 1 1626 233 297 0 51 chr5 136553808 136553886 -15983373 + polypurine Low_complexity Low_complexity 4 77 0 1 1626 228 143 0 0 chr5 136554158 136554193 -15983066 - ZP3AR Satellite Satellite -130 82 48 1 1626 446 0 19 0 chr5 136554305 136554359 -15982900 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1626 483 100 0 0 chr5 136554359 136554429 -15982830 + (GA)n Simple_repeat Simple_repeat 2 71 0 1 1626 1107 116 11 6 chr5 136554595 136554764 -15982495 - ORR1A3 LTR MaLR -8 318 148 1 1626 1604 43 0 0 chr5 136554764 136554950 -15982309 + B2_Mm1a SINE B2 1 186 -7 1 1626 1244 42 0 0 chr5 136554963 136555107 -15982152 + B1_Mus1 SINE Alu 4 147 -1 1 1626 392 299 51 0 chr5 136555153 136555270 -15981989 - B4 SINE B4 -82 210 88 1 1626 372 297 18 26 chr5 136555310 136555424 -15981835 - B4A SINE B4 -178 114 2 1 1626 231 226 0 19 chr5 136555424 136555472 -15981787 - B1F SINE Alu -93 56 10 1 1626 1860 110 38 28 chr5 136555867 136556186 -15981073 - RLTRETN_Mm LTR ERVK 0 322 1 1 1626 1263 101 6 0 chr5 136556264 136556476 -15980783 + ZP3AR Satellite Satellite 1 213 0 1 1626 361 221 26 0 chr5 136556476 136556553 -15980706 + ID4_ SINE ID 1 79 -4 1 1626 212 59 0 29 chr5 136556572 136556607 -15980652 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 1 1626 457 194 43 0 chr5 136556837 136556930 -15980329 - B3 SINE B2 -118 98 2 1 1626 499 293 73 7 chr5 136556982 136557133 -15980126 + RSINE1 SINE B4 3 163 -2 1 1626 21 0 0 0 chr5 136557161 136557182 -15980077 + AT_rich Low_complexity Low_complexity 1 21 0 1 1626 242 348 11 0 chr5 136557436 136557528 -15979731 - ZP3AR Satellite Satellite -82 130 38 1 1626 294 247 151 0 chr5 136557532 136557625 -15979634 - PB1D10 SINE Alu 0 117 11 1 1626 294 95 0 0 chr5 136557675 136557717 -15979542 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1626 345 297 101 8 chr5 136557844 136557963 -15979296 + B1_Mus2 SINE Alu 1 130 -17 1 1626 1437 75 5 5 chr5 136558038 136558227 -15979032 - B2_Mm1t SINE B2 -3 190 2 1 1626 398 263 157 21 chr5 136558314 136558454 -15978805 + B3 SINE B2 18 176 -40 1 1626 451 231 25 106 chr5 136558454 136558471 -15978788 + ID_B1 SINE B4 78 224 0 1 1626 784 149 28 14 chr5 136558471 136558614 -15978645 + B1_Mur4 SINE Alu 6 150 0 2 1626 237 261 0 14 chr5 136558622 136558692 -15978567 + L1M1 LINE L1 5776 5844 -456 2 1626 673 274 58 25 chr5 136558771 136559137 -15978122 + B4 SINE B4 2 252 -40 2 1626 932 145 14 0 chr5 136559185 136559323 -15977936 + B1_Mur4 SINE Alu 1 140 -10 2 1626 231 36 0 0 chr5 136559323 136559351 -15977908 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2 1626 297 275 0 0 chr5 136559351 136559420 -15977839 + B4 SINE B4 224 292 0 2 1626 185 287 195 0 chr5 136560635 136560722 -15976537 - MIR SINE MIR -65 143 40 2 1626 378 0 0 0 chr5 136561040 136561082 -15976177 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 1626 216 348 0 32 chr5 136562050 136562145 -15975114 - PB1D10 SINE Alu -22 95 4 2 1626 347 242 42 0 chr5 136562815 136562910 -15974349 + PB1D7 SINE Alu 22 120 0 2 1626 366 243 108 0 chr5 136562927 136563038 -15974221 + B3A SINE B2 9 131 -67 2 1626 1107 51 14 0 chr5 136563161 136563299 -15973960 + B1_Mus1 SINE Alu 2 141 -7 2 1626 210 37 0 0 chr5 136563303 136563330 -15973929 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1626 210 109 20 61 chr5 136563468 136563517 -15973742 + T-rich Low_complexity Low_complexity 1 47 0 2 1626 562 334 0 41 chr5 136563587 136563807 -15973452 + ZP3AR Satellite Satellite 1 211 -1 2 1626 212 0 0 35 chr5 136563830 136563859 -15973400 + (GGGTG)n Simple_repeat Simple_repeat 4 31 0 2 1626 773 140 0 7 chr5 136564013 136564150 -15973109 + (TA)n Simple_repeat Simple_repeat 2 137 0 2 1626 202 311 245 0 chr5 136564200 136564306 -15972953 - L2b LINE L2 -2 3373 3242 2 1626 403 240 52 52 chr5 136565615 136565751 -15971508 - MIRb SINE MIR -106 162 27 2 1626 547 207 15 0 chr5 136565865 136566000 -15971259 + CT-rich Low_complexity Low_complexity 2 138 0 2 1626 1040 139 0 11 chr5 136566000 136566182 -15971077 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1626 712 198 15 22 chr5 136566182 136566316 -15970943 - B1_Mus1 SINE Alu -14 134 2 2 1626 22 56 0 0 chr5 136566317 136566353 -15970906 + AT_rich Low_complexity Low_complexity 1 36 0 2 1626 249 268 113 0 chr5 136566369 136566440 -15970819 - RSINE1 SINE B4 -19 146 68 2 1626 626 196 14 50 chr5 136568313 136568453 -15968806 + ID_B1 SINE B4 90 224 0 2 1626 992 69 123 12 chr5 136568470 136568632 -15968627 + B2_Mm2 SINE B2 6 185 -10 2 1626 597 302 16 16 chr5 136568637 136568829 -15968430 + B4A SINE B4 1 192 -100 2 1626 549 181 16 41 chr5 136569299 136569420 -15967839 - PB1D9 SINE Alu 0 120 3 2 1626 423 0 0 0 chr5 136569433 136569480 -15967779 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1626 189 0 0 0 chr5 136569480 136569500 -15967759 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1626 256 339 54 0 chr5 136569512 136569624 -15967635 - PB1D7 SINE Alu -2 118 1 2 1626 445 290 20 20 chr5 136569624 136569696 -15967563 - ID SINE ID -141 83 12 2 1626 496 146 32 35 chr5 136569703 136569819 -15967440 - PB1D10 SINE Alu -3 114 1 2 1626 691 167 0 8 chr5 136569876 136569997 -15967262 - B1_Mur4 SINE Alu -30 120 1 2 1626 364 325 49 31 chr5 136569997 136570034 -15967225 - B4 SINE B4 -82 206 46 2 1626 197 191 47 19 chr5 136570087 136570194 -15967065 + (TG)n Simple_repeat Simple_repeat 1 110 0 2 1626 372 22 0 0 chr5 136570406 136570451 -15966808 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1626 454 175 144 0 chr5 136571009 136571106 -15966153 - B1F SINE Alu -7 142 32 2 1626 208 356 41 25 chr5 136571569 136571690 -15965569 + MIR SINE MIR 20 142 -120 2 1626 323 275 0 81 chr5 136571710 136571797 -15965462 - ID4_ SINE ID -3 80 1 2 1626 1519 58 0 0 chr5 136571797 136572167 -15965092 - ZP3AR Satellite Satellite -11 370 1 2 1626 189 0 0 0 chr5 136572299 136572320 -15964939 + (T)n Simple_repeat Simple_repeat 1 21 0 2 1626 251 318 57 0 chr5 136572329 136572417 -15964842 - ID_B1 SINE B4 -50 174 82 2 1626 237 246 91 15 chr5 136572838 136572904 -15964355 + PB1D10 SINE Alu 1 71 -46 2 1626 415 256 23 2 chr5 136572919 136573033 -15964226 + PB1D7 SINE Alu 1 121 -29 2 1626 324 269 125 0 chr5 136573033 136573137 -15964122 + PB1D10 SINE Alu 1 117 0 2 1626 671 101 119 0 chr5 136573147 136573256 -15964003 + B1_Mur1 SINE Alu 15 136 -13 2 1626 326 23 23 0 chr5 136573258 136573301 -15963958 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2 1626 27 49 0 0 chr5 136573306 136573347 -15963912 + AT_rich Low_complexity Low_complexity 1 41 0 2 1626 1504 60 38 0 chr5 136573348 136573532 -15963727 - B2_Mm2 SINE B2 -4 191 1 2 1626 432 107 23 23 chr5 136573547 136573559 -15963700 + polypurine Low_complexity Low_complexity 3 13 0 2 1626 1156 56 35 0 chr5 136573559 136573701 -15963558 + B1_Mus2 SINE Alu 1 147 0 2 1626 432 107 23 23 chr5 136573701 136573774 -15963485 + GA-rich Low_complexity Low_complexity 14 88 0 2 1626 839 216 312 72 chr5 136573791 136574087 -15963172 - MT2A LTR ERVL 0 533 147 2 1626 817 165 8 0 chr5 136574087 136574214 -15963045 + B1_Mur4 SINE Alu 4 131 -19 2 1626 839 216 312 72 chr5 136574214 136574347 -15962912 - MT2A LTR ERVL -387 146 1 2 1626 374 262 37 0 chr5 136574358 136574465 -15962794 + ZP3AR Satellite Satellite 47 157 -55 2 1626 324 254 0 0 chr5 136574414 136574499 -15962760 + ID4 SINE ID 8 92 -60 2 1626 222 311 40 0 chr5 136575012 136575086 -15962173 + ID4_ SINE ID 3 79 -4 2 1626 1259 48 0 0 chr5 136575240 136575387 -15961872 + B1_Mus1 SINE Alu 2 148 0 2 1626 24 53 0 0 chr5 136575438 136575476 -15961783 + AT_rich Low_complexity Low_complexity 1 38 0 2 1626 301 89 0 0 chr5 136575476 136575521 -15961738 - ID_B1 SINE B4 0 224 180 2 1626 281 293 49 0 chr5 136575532 136575614 -15961645 - ID_B1 SINE B4 -131 93 8 2 1626 225 0 0 0 chr5 136575621 136575646 -15961613 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1626 479 239 25 8 chr5 136575679 136575797 -15961462 + PB1D7 SINE Alu 1 120 0 2 1626 971 82 127 0 chr5 136576168 136576326 -15960933 - B2_Mm2 SINE B2 -3 192 15 2 1626 297 0 0 0 chr5 136576547 136576580 -15960679 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1627 216 245 0 0 chr5 136577662 136577715 -15959544 + (CATG)n Simple_repeat Simple_repeat 3 55 0 2 1627 672 253 19 0 chr5 136578799 136578957 -15958302 + RSINE1 SINE B4 1 161 -4 2 1627 882 214 76 19 chr5 136579402 136579612 -15957647 - ID_B1 SINE B4 -1 223 2 2 1627 484 248 74 0 chr5 136579901 136580022 -15957237 + ID_B1 SINE B4 92 221 -3 2 1627 633 210 0 8 chr5 136580871 136580996 -15956263 + ZP3AR Satellite Satellite 38 161 -51 2 1627 1580 232 42 18 chr5 136581002 136581384 -15955875 - MTD LTR MaLR -9 410 20 2 1627 765 245 55 20 chr5 136581890 136582090 -15955169 - B3 SINE B2 -8 208 2 2 1627 246 300 0 0 chr5 136582398 136582468 -15954791 - ID4_ SINE ID -4 79 10 2 1627 415 228 22 0 chr5 136582434 136582526 -15954733 - ZP3AR Satellite Satellite -74 138 45 2 1627 671 241 35 0 chr5 136583238 136583379 -15953880 + B1_Mur1 SINE Alu 3 148 -1 2 1627 766 216 10 70 chr5 136583393 136583592 -15953667 - B3A SINE B2 -2 196 10 2 1627 544 218 201 13 chr5 136583664 136583813 -15953446 - B3A SINE B2 -18 180 4 2 1627 22 0 0 0 chr5 136583990 136584012 -15953247 + AT_rich Low_complexity Low_complexity 1 22 0 2 1627 504 283 161 0 chr5 136584013 136584193 -15953066 - B4 SINE B4 -73 219 11 2 1627 258 302 60 40 chr5 136584197 136584297 -15952962 - PB1 SINE Alu -25 102 1 2 1627 474 262 17 75 chr5 136584324 136584497 -15952762 - RSINE1 SINE B4 0 165 3 2 1627 907 149 13 20 chr5 136584752 136584903 -15952356 - B1_Mur4 SINE Alu 0 150 1 2 1627 460 324 0 56 chr5 136585166 136585326 -15951933 + B3 SINE B2 62 212 -4 2 1627 888 189 0 7 chr5 136585351 136585484 -15951775 + B1_Mus2 SINE Alu 5 137 -10 2 1627 258 32 0 0 chr5 136585484 136585515 -15951744 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1627 506 216 11 0 chr5 136585529 136585645 -15951614 + ID_B1 SINE B4 84 197 -27 2 1627 269 255 18 117 chr5 136585547 136585658 -15951601 + PB1D10 SINE Alu 18 117 0 2 1627 1023 105 7 34 chr5 136585672 136585820 -15951439 + B1_Mus2 SINE Alu 4 147 0 2 1627 243 146 0 0 chr5 136585820 136585861 -15951398 + (A)n Simple_repeat Simple_repeat 1 41 0 2 1627 357 145 0 0 chr5 136585856 136585918 -15951341 + (GGA)n Simple_repeat Simple_repeat 3 64 0 2 1627 853 72 181 16 chr5 136585920 136586047 -15951212 + B1_Mus1 SINE Alu 1 148 0 2 1627 984 152 17 23 chr5 136586094 136586111 -15951148 - B2_Mm2 SINE B2 -17 178 162 2 1627 270 0 0 0 chr5 136586111 136586141 -15951118 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 1627 984 152 17 23 chr5 136586141 136586298 -15950961 - B2_Mm2 SINE B2 -34 161 5 2 1627 183 42 0 0 chr5 136586298 136586322 -15950937 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 2 1627 561 190 174 0 chr5 136586323 136586444 -15950815 - B1_Mur3 SINE Alu -7 142 1 2 1627 297 169 228 33 chr5 136586444 136586536 -15950723 + PB1D9 SINE Alu 11 120 0 2 1627 199 0 0 61 chr5 136586539 136586572 -15950687 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 2 1627 356 237 43 0 chr5 136586791 136586884 -15950375 + B1F SINE Alu 2 98 -51 2 1627 430 312 29 34 chr5 136588250 136588459 -15948800 + CYRA11_Mm Unknown Y-chromosome 138 345 -272 2 1627 1230 149 9 14 chr5 136588292 136588510 -15948749 - URR1B DNA MER1_type -7 218 2 2 1627 816 245 25 45 chr5 136588668 136588869 -15948390 - ID_B1 SINE B4 -1 223 27 3 1627 520 241 26 65 chr5 136588867 136589022 -15948237 - ID_B1 SINE B4 -3 221 73 3 1627 592 225 146 99 chr5 136589043 136589255 -15948004 + ID_B1 SINE B4 3 224 0 3 1627 252 254 51 101 chr5 136589314 136589393 -15947866 + ID SINE ID 15 89 -135 3 1627 1420 99 6 10 chr5 136589368 136589638 -15947621 - ZP3AR Satellite Satellite -5 268 1 3 1627 195 100 0 0 chr5 136590743 136590773 -15946486 + (TCC)n Simple_repeat Simple_repeat 1 30 0 3 1627 226 261 0 0 chr5 136591024 136591070 -15946189 + B1F SINE Alu 5 50 -99 3 1627 781 171 0 33 chr5 136591120 136591271 -15945988 + B1_Mus1 SINE Alu 3 148 0 3 1627 1153 58 0 0 chr5 136591294 136591432 -15945827 + B1_Mus2 SINE Alu 1 138 -9 3 1627 440 308 82 0 chr5 136591683 136591829 -15945430 - RSINE1 SINE B4 -6 159 2 3 1627 269 233 67 0 chr5 136591830 136591890 -15945369 - MTEb LTR MaLR -313 66 3 3 1627 988 173 25 59 chr5 136591892 136592095 -15945164 + B3A SINE B2 1 196 -2 3 1627 183 315 41 0 chr5 136592865 136592938 -15944321 - MIRc SINE MIR -122 146 71 3 1627 597 215 72 22 chr5 136593258 136593396 -15943863 - B1_Mus2 SINE Alu -2 145 1 3 1627 284 345 116 41 chr5 136593550 136593792 -15943467 - RMER2 LTR ERV1 -4 563 304 3 1627 1145 58 0 0 chr5 136593988 136594126 -15943133 - B1_Mm SINE Alu -9 138 1 3 1627 258 246 53 0 chr5 136594187 136594244 -15943015 + ID4_ SINE ID 8 67 -16 3 1627 442 294 71 33 chr5 136594401 136594584 -15942675 + MER20 DNA MER1_type 7 196 -23 3 1627 500 269 23 8 chr5 136594589 136594720 -15942539 + RSINE1 SINE B4 3 135 -30 3 1627 421 123 188 6 chr5 136594772 136594893 -15942366 + B1_Mus1 SINE Alu 1 149 -1 3 1627 324 111 0 18 chr5 136595146 136595201 -15942058 - PB1D7 SINE Alu -60 60 7 3 1627 228 284 0 100 chr5 136595201 136595236 -15942023 - B4A SINE B4 -147 145 65 3 1627 281 257 14 14 chr5 136595345 136595416 -15941843 + ID4_ SINE ID 2 72 -11 3 1627 375 283 95 54 chr5 136595514 136595527 -15941732 - MT2B LTR ERVL -325 276 245 3 1627 495 210 7 0 chr5 136595527 136595630 -15941629 - B1_Mus1 SINE Alu -13 107 1 3 1627 375 283 95 54 chr5 136595630 136595682 -15941577 - MT2B LTR ERVL -325 244 102 3 1627 299 308 113 23 chr5 136596115 136596248 -15941011 - ID_B1 SINE B4 -7 217 73 3 1627 435 168 178 52 chr5 136596345 136596475 -15940784 + B1_Mur2 SINE Alu 6 149 0 3 1627 868 132 44 0 chr5 136596559 136596695 -15940564 - B1_Mus2 SINE Alu -5 142 1 3 1627 331 273 125 0 chr5 136596731 136596819 -15940440 - B3A SINE B2 -67 131 33 3 1627 349 239 125 0 chr5 136596878 136596966 -15940293 - B3 SINE B2 -55 161 63 3 1627 262 210 177 50 chr5 136597018 136597141 -15940118 - B3A SINE B2 -45 150 2 3 1627 597 237 156 0 chr5 136597153 136597326 -15939933 - B3 SINE B2 -16 200 1 3 1627 321 167 0 0 chr5 136597527 136597581 -15939678 - ID4_ SINE ID -26 57 4 3 1627 1317 88 43 16 chr5 136597584 136597769 -15939490 - B2_Mm2 SINE B2 -4 191 2 3 1627 255 268 11 109 chr5 136598159 136598251 -15939008 + ZP3AR Satellite Satellite 53 135 -77 3 1627 272 221 302 31 chr5 136600205 136600364 -15936895 + RMER21B LTR ERV1 437 684 -263 3 1627 1278 173 99 14 chr5 136600547 136600829 -15936430 + RodERV21-int LTR ERV1 7 312 -4679 3 1627 350 229 71 30 chr5 136600825 136600924 -15936335 + RodERV21-int LTR ERV1 1754 1856 -3135 3 1627 356 239 208 21 chr5 136600944 136601136 -15936123 + RLTR15 LTR ERVK 1 228 -131 3 1627 235 282 170 26 chr5 136601225 136601378 -15935881 + RLTR15 LTR ERVK 167 341 -18 3 1627 2786 182 117 24 chr5 136601399 136602116 -15935143 + RodERV21-int LTR ERV1 1927 2710 -2281 3 1627 420 368 27 36 chr5 136602281 136602721 -15934538 + RodERV21-int LTR ERV1 3639 4074 -3017 3 1627 2961 184 56 20 chr5 136604342 136604877 -15932382 + RodERV21-int LTR ERV1 4191 4749 -242 3 1627 762 93 364 0 chr5 136604877 136605017 -15932242 + B2_Mm2 SINE B2 3 193 -2 3 1627 2961 184 56 20 chr5 136605017 136605085 -15932174 + RodERV21-int LTR ERV1 4750 4816 -175 3 1627 292 207 126 0 chr5 136605111 136605198 -15932061 + RMER4B LTR ERVK 356 453 -132 3 1627 526 207 99 0 chr5 136605238 136605359 -15931900 + RMER21B LTR ERV1 37 169 -673 3 1627 280 237 99 40 chr5 136605559 136605660 -15931599 + RSINE1 SINE B4 25 131 -34 3 1627 738 87 0 0 chr5 136605673 136605776 -15931483 + (CACG)n Simple_repeat Simple_repeat 1 103 0 3 1627 321 68 0 0 chr5 136605776 136605820 -15931439 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1627 252 77 0 0 chr5 136607521 136607560 -15929699 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 1627 331 300 0 0 chr5 136607560 136607640 -15929619 - ID4 SINE ID -3 80 1 3 1627 837 239 12 5 chr5 136607666 136607862 -15929397 - B3A SINE B2 -23 193 2 3 1627 290 180 102 55 chr5 136609482 136609572 -15927687 + PB1D10 SINE Alu 18 110 -7 3 1627 357 305 29 19 chr5 136609953 136610067 -15927192 + PB1D7 SINE Alu 6 120 0 3 1627 880 233 47 5 chr5 136610083 136610294 -15926965 + ID_B1 SINE B4 2 221 -3 3 1627 183 42 0 0 chr5 136610301 136610325 -15926934 + (G)n Simple_repeat Simple_repeat 1 24 0 3 1627 268 145 104 21 chr5 136610724 136610789 -15926470 - B1_Mur1 SINE Alu -31 118 51 3 1627 463 278 40 87 chr5 136610791 136610964 -15926295 - ID_B1 SINE B4 -46 178 14 3 1627 1208 21 14 27 chr5 136611217 136611365 -15925894 + B1_Mus1 SINE Alu 2 147 -1 3 1627 252 206 103 0 chr5 136612281 136612349 -15924910 + L1MB3 LINE L1 5693 5767 -407 3 1627 1057 57 7 28 chr5 136612662 136612806 -15924453 + B1_Mus1 SINE Alu 1 141 -7 3 1627 286 245 0 117 chr5 136612850 136612970 -15924289 + MT2B LTR ERVL 152 257 -344 3 1627 682 215 0 27 chr5 136612865 136613013 -15924246 + B1_Mur4 SINE Alu 1 144 -6 3 1627 264 59 0 0 chr5 136613112 136613146 -15924113 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 3 1627 407 241 62 1 chr5 136613557 136613693 -15923566 + L1MB3 LINE L1 5749 5891 -287 3 1627 311 269 0 114 chr5 136613697 136613743 -15923516 + ZP3AR Satellite Satellite 46 86 -126 3 1627 358 236 356 14 chr5 136613743 136613784 -15923475 + B3A SINE B2 3 45 -153 3 1627 1214 42 0 0 chr5 136613784 136613928 -15923331 + B1_Mus2 SINE Alu 4 147 0 3 1627 358 236 356 14 chr5 136613928 136614032 -15923227 + B3A SINE B2 46 197 -1 3 1627 311 269 0 114 chr5 136614032 136614090 -15923169 + ZP3AR Satellite Satellite 87 138 -74 3 1627 270 186 51 0 chr5 136614047 136614106 -15923153 + ID4_ SINE ID 1 62 -21 3 1627 746 236 88 0 chr5 136614102 136614284 -15922975 - ID_B1 SINE B4 -22 202 5 3 1627 520 168 372 26 chr5 136614300 136614453 -15922806 - B3 SINE B2 -9 207 2 3 1627 676 259 103 33 chr5 136614924 136615195 -15922064 - B4 SINE B4 -1 291 2 3 1627 254 258 62 41 chr5 136615856 136615953 -15921306 - B1F2 SINE Alu -50 99 1 3 1627 582 212 0 26 chr5 136616745 136616861 -15920398 - ID_B1 SINE B4 -5 219 107 3 1627 803 202 155 5 chr5 136616871 136617065 -15920194 - ID_B1 SINE B4 -1 223 1 3 1627 393 200 35 0 chr5 136617080 136617165 -15920094 - PB1D10 SINE Alu -7 110 23 3 1627 397 239 248 0 chr5 136617324 136617433 -15919826 + RSINE1 SINE B4 2 137 -28 3 1627 794 170 13 64 chr5 136617529 136617686 -15919573 - B1_Mur2 SINE Alu 0 149 1 3 1627 235 146 0 59 chr5 136617706 136617757 -15919502 - ID_B1 SINE B4 0 224 177 3 1627 369 312 57 14 chr5 136618055 136618195 -15919064 - RSINE1 SINE B4 -18 147 2 3 1627 465 300 122 13 chr5 136618195 136618410 -15918849 - B4 SINE B4 -39 253 13 3 1627 2789 144 147 47 chr5 136618410 136618710 -15918549 + RMER4B LTR ERVK 1 333 -252 3 1627 1144 90 90 0 chr5 136618710 136618877 -15918382 + B2_Mm2 SINE B2 2 183 -12 3 1627 2789 144 147 47 chr5 136618877 136619108 -15918151 + RMER4B LTR ERVK 334 585 0 3 1627 465 300 122 13 chr5 136619108 136619120 -15918139 - B4 SINE B4 -280 12 1 3 1627 740 262 47 28 chr5 136619129 136619341 -15917918 - B3 SINE B2 0 216 1 3 1627 1546 47 4 0 chr5 136619573 136619845 -15917414 + ZP3AR Satellite Satellite 1 273 0 3 1627 485 201 30 2 chr5 136620173 136620300 -15916959 - B1F SINE Alu -12 136 14 3 1627 263 327 51 62 chr5 136620183 136620359 -15916900 - B4A SINE B4 -71 221 48 3 1627 222 37 0 0 chr5 136620981 136621008 -15916251 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1627 604 279 34 34 chr5 136621337 136621537 -15915722 - RLTR26 LTR ERVK -226 416 217 3 1627 1804 225 51 63 chr5 136621537 136621692 -15915567 + RMER13A LTR ERVK 1 150 -710 3 1627 1188 68 0 0 chr5 136621692 136621838 -15915421 + B1_Mus2 SINE Alu 2 147 0 3 1627 1804 225 51 63 chr5 136621838 136622170 -15915089 + RMER13A LTR ERVK 151 482 -378 3 1627 336 253 46 0 chr5 136622310 136622397 -15914862 + B4A SINE B4 83 173 -119 3 1627 582 46 45 11 chr5 136622414 136622502 -15914757 - B1_Mus2 SINE Alu -56 91 1 3 1627 2061 73 21 0 chr5 136622502 136622781 -15914478 - ORR1A2 LTR MaLR -42 285 1 3 1627 387 98 0 0 chr5 136622786 136622847 -15914412 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 1627 847 224 28 6 chr5 136624081 136624261 -15912998 - B3A SINE B2 -4 194 11 3 1627 318 289 44 0 chr5 136624272 136624362 -15912897 - PB1D10 SINE Alu -7 110 17 3 1627 309 326 0 0 chr5 136624287 136624379 -15912880 - ID_B1 SINE B4 -52 172 81 3 1627 420 158 5 13 chr5 136624471 136624553 -15912706 - RSINE1 SINE B4 -213 79 2 3 1627 213 196 0 0 chr5 136625665 136625711 -15911548 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 1627 352 288 172 6 chr5 136625760 136625917 -15911342 - ID_B1 SINE B4 -38 186 4 3 1627 1631 25 17 2 chr5 136626901 136627217 -15910042 - ZP3AR Satellite Satellite -24 320 1 3 1627 186 71 0 0 chr5 136627245 136627273 -15909986 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1627 21 0 0 0 chr5 136627860 136627881 -15909378 + AT_rich Low_complexity Low_complexity 1 21 0 3 1627 189 107 0 0 chr5 136627881 136627909 -15909350 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1627 462 292 8 8 chr5 136627910 136628031 -15909228 - RSINE1 SINE B4 -25 140 20 4 1627 300 270 27 0 chr5 136628534 136628608 -15908651 + ID4 SINE ID 2 77 -6 4 1627 555 156 0 0 chr5 136628608 136628730 -15908529 + (CA)n Simple_repeat Simple_repeat 1 122 0 4 1627 626 207 64 0 chr5 136628747 136628887 -15908372 + B1_Mur2 SINE Alu 1 149 0 4 1627 538 163 51 0 chr5 136628957 136629055 -15908204 + B1_Mur2 SINE Alu 13 115 -34 4 1627 284 235 29 0 chr5 136629054 136629122 -15908137 - PB1D10 SINE Alu -42 75 6 4 1627 322 230 104 60 chr5 136629055 136629088 -15908171 + MT2B2 LTR ERVL 177 313 -271 4 1627 219 319 0 14 chr5 136629463 136629536 -15907723 + ID_B1 SINE B4 81 152 -72 4 1627 653 229 152 11 chr5 136629553 136629730 -15907529 - ID_B1 SINE B4 -19 205 4 4 1627 2073 63 78 104 chr5 136629804 136629926 -15907333 + ORR1A3 LTR MaLR 1 107 -219 4 1627 1419 57 6 0 chr5 136629926 136630102 -15907157 + B2_Mm1t SINE B2 2 178 -15 4 1627 180 0 0 0 chr5 136630104 136630124 -15907135 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4 1627 2073 63 78 104 chr5 136630124 136630333 -15906926 + ORR1A3 LTR MaLR 108 326 0 4 1627 328 268 28 48 chr5 136630354 136630490 -15906769 + B4A SINE B4 1 137 -155 4 1627 588 355 30 66 chr5 136630652 136630864 -15906395 + B4A SINE B4 2 211 -81 4 1627 1113 214 5 18 chr5 136630864 136631083 -15906176 + B3 SINE B2 1 216 0 4 1627 588 355 30 66 chr5 136631083 136631172 -15906087 + B4A SINE B4 212 292 0 4 1627 21 36 0 0 chr5 136631364 136631392 -15905867 + AT_rich Low_complexity Low_complexity 1 28 0 4 1627 2247 121 15 9 chr5 136631548 136631883 -15905376 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1627 21699 74 32 18 chr5 136631883 136634911 -15902348 + IAPEz-int LTR ERVK 8 3076 -3405 4 1627 6511 54 12 7 chr5 136634897 136635743 -15901516 + IAPEz-int LTR ERVK 5630 6479 -2 4 1627 2247 121 15 9 chr5 136635745 136636080 -15901179 + IAPLTR1a_Mm LTR ERVK 1 337 0 4 1627 425 245 120 19 chr5 136636269 136636377 -15900882 - B1_Mur1 SINE Alu 0 149 31 4 1627 546 242 0 0 chr5 136636403 136636564 -15900695 + (TG)n Simple_repeat Simple_repeat 1 161 0 4 1627 582 306 26 79 chr5 136636576 136636881 -15900378 - B4A SINE B4 0 292 4 4 1627 685 110 19 13 chr5 136636907 136637063 -15900196 + (TG)n Simple_repeat Simple_repeat 2 158 0 4 1627 356 291 25 38 chr5 136637065 136637222 -15900037 - RSINE1 SINE B4 0 165 11 4 1627 459 0 0 0 chr5 136637689 136637740 -15899519 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1627 264 59 0 0 chr5 136637740 136637773 -15899486 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1627 396 362 54 13 chr5 136637813 136638037 -15899222 - B4A SINE B4 -10 282 50 4 1627 752 182 80 0 chr5 136638116 136638253 -15899006 + B1_Mus1 SINE Alu 1 148 0 4 1627 672 244 97 15 chr5 136638261 136638457 -15898802 - B3 SINE B2 0 216 5 4 1627 517 212 7 36 chr5 136638465 136638602 -15898657 - BC1_Mm scRNA scRNA -18 134 2 4 1627 254 95 24 0 chr5 136638654 136638696 -15898563 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1627 521 211 35 0 chr5 136638699 136638813 -15898446 - RSINE1 SINE B4 -22 143 26 4 1627 291 276 164 42 chr5 136638828 136639017 -15898242 - ID_B1 SINE B4 -9 215 4 4 1627 217 286 0 0 chr5 136639251 136639300 -15897959 - B1F2 SINE Alu -81 68 20 4 1627 393 264 128 0 chr5 136639258 136639383 -15897876 - ID_B1 SINE B4 -82 142 2 4 1627 452 250 48 0 chr5 136639387 136639491 -15897768 - PB1D10 SINE Alu -8 109 1 4 1627 471 220 67 17 chr5 136639851 136639971 -15897288 - ZP3AR Satellite Satellite -66 146 21 4 1627 255 125 0 0 chr5 136640004 136640044 -15897215 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 4 1627 410 255 214 7 chr5 136640069 136640223 -15897036 - B3 SINE B2 -28 188 3 4 1627 263 228 149 56 chr5 136640242 136640349 -15896910 - PB1D10 SINE Alu 0 117 1 4 1627 747 186 0 0 chr5 136640590 136640884 -15896375 + (TG)n Simple_repeat Simple_repeat 1 294 0 4 1627 447 250 55 141 chr5 136640969 136641132 -15896127 + B3A SINE B2 45 198 0 4 1627 273 281 0 59 chr5 136641370 136641472 -15895787 + PB1D10 SINE Alu 2 97 -20 4 1627 457 250 6 6 chr5 136641472 136641645 -15895614 + (TG)n Simple_repeat Simple_repeat 1 173 0 4 1627 670 226 7 0 chr5 136641682 136641819 -15895440 + RSINE1 SINE B4 6 143 -22 4 1627 764 201 14 0 chr5 136642180 136642324 -15894935 - B1_Mus1 SINE Alu -1 147 2 4 1627 288 236 105 75 chr5 136642349 136642482 -15894777 - B1F2 SINE Alu -12 137 1 4 1627 180 0 0 0 chr5 136642744 136642764 -15894495 + (GA)n Simple_repeat Simple_repeat 1 20 0 4 1627 752 37 9 0 chr5 136642844 136642951 -15894308 + ZP3AR Satellite Satellite 41 148 -64 4 1627 394 270 96 91 chr5 136642951 136643171 -15894088 + ID_B1 SINE B4 1 221 -3 4 1627 183 333 16 0 chr5 136643804 136643867 -15893392 - L2c LINE L2 -70 3317 3254 4 1627 779 242 0 69 chr5 136644007 136644211 -15893048 + B3A SINE B2 9 198 0 4 1627 213 301 24 0 chr5 136644549 136644632 -15892627 + RSINE1 SINE B4 2 86 -79 4 1627 608 152 9 0 chr5 136644562 136644667 -15892592 + B3 SINE B2 15 120 -96 4 1627 245 169 17 0 chr5 136644913 136644972 -15892287 + CT-rich Low_complexity Low_complexity 1 60 0 4 1627 287 235 148 0 chr5 136644972 136645053 -15892206 - B1_Mus2 SINE Alu -1 146 54 4 1627 378 0 0 0 chr5 136645094 136645136 -15892123 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 4 1627 1272 41 0 0 chr5 136645152 136645298 -15891961 - B1_Mus2 SINE Alu 0 147 2 4 1627 479 302 185 0 chr5 136645300 136645489 -15891770 - ID_B1 SINE B4 0 224 1 4 1627 425 233 19 28 chr5 136645507 136645613 -15891646 - PB1D10 SINE Alu 0 117 13 4 1627 37 0 0 0 chr5 136645801 136645838 -15891421 + AT_rich Low_complexity Low_complexity 1 37 0 4 1627 27 0 0 0 chr5 136645866 136645893 -15891366 + AT_rich Low_complexity Low_complexity 1 27 0 4 1627 21 36 0 0 chr5 136646475 136646503 -15890756 + GC_rich Low_complexity Low_complexity 1 28 0 4 1627 24 53 0 0 chr5 136647987 136648025 -15889234 + AT_rich Low_complexity Low_complexity 1 38 0 4 1627 643 211 90 8 chr5 136648036 136648170 -15889089 - RSINE1 SINE B4 -17 148 4 4 1627 254 226 82 51 chr5 136648622 136648720 -15888539 - MLT1A0 LTR MaLR -214 151 51 4 1627 234 0 0 0 chr5 136649030 136649056 -15888203 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1627 770 214 111 16 chr5 136649056 136649246 -15888013 - ID_B1 SINE B4 0 224 17 4 1627 376 278 67 97 chr5 136649305 136649333 -15887926 - B2_Mm2 SINE B2 -4 191 167 4 1627 806 157 241 11 chr5 136649333 136649507 -15887752 - B3 SINE B2 -1 215 2 4 1627 376 278 67 97 chr5 136649507 136649518 -15887741 - B2_Mm2 SINE B2 -29 166 157 4 1627 282 29 0 0 chr5 136649518 136649553 -15887706 + (TG)n Simple_repeat Simple_repeat 2 36 0 4 1627 817 196 8 2 chr5 136649553 136649707 -15887552 - B3A SINE B2 -39 156 3 4 1627 952 177 115 0 chr5 136650327 136650519 -15886740 + B3 SINE B2 2 215 -1 4 1627 254 286 132 0 chr5 136650531 136650622 -15886637 + MTE2a LTR MaLR 18 120 -299 4 1627 524 242 33 142 chr5 136650633 136650652 -15886607 - B2_Mm1t SINE B2 -4 189 177 4 1627 1611 187 84 61 chr5 136650652 136650777 -15886482 - ORR1D1 LTR MaLR -3 371 249 4 1627 261 75 0 0 chr5 136650777 136650817 -15886442 + (CAGG)n Simple_repeat Simple_repeat 2 41 0 4 1627 1611 187 84 61 chr5 136650817 136650953 -15886306 - ORR1D1 LTR MaLR -126 248 102 4 1627 1118 102 0 20 chr5 136650953 136651103 -15886156 - B1_Mus1 SINE Alu 0 148 2 4 1627 1611 187 84 61 chr5 136651103 136651199 -15886060 - ORR1D1 LTR MaLR -273 101 5 4 1627 931 201 64 8 chr5 136651199 136651391 -15885868 - B3 SINE B2 -23 193 1 4 1627 725 256 53 80 chr5 136651399 136651662 -15885597 + MTE2a LTR MaLR 96 351 -28 4 1627 998 58 15 0 chr5 136651675 136651812 -15885447 - B1_Mm SINE Alu 0 147 9 4 1627 794 149 15 0 chr5 136651926 136652060 -15885199 + B1_Mus1 SINE Alu 6 141 -7 4 1627 227 315 22 65 chr5 136651944 136652062 -15885197 - YREP_Mm Unknown Unknown -1518 294 185 4 1627 207 0 0 0 chr5 136652062 136652085 -15885174 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1627 227 315 22 65 chr5 136652085 136652105 -15885154 - YREP_Mm Unknown Unknown -1628 184 162 4 1627 1105 54 0 0 chr5 136652109 136652239 -15885020 + B1_Mus1 SINE Alu 3 132 -16 4 1627 1141 76 14 0 chr5 136652432 136652576 -15884683 - B1_Mus2 SINE Alu 0 147 2 4 1627 622 136 10 0 chr5 136652585 136652688 -15884571 - ID_B1 SINE B4 -6 218 115 4 1627 916 161 7 0 chr5 136652758 136652901 -15884358 - B1_Mur3 SINE Alu -1 148 5 4 1627 486 198 50 0 chr5 136653028 136653129 -15884130 - RSINE1 SINE B4 -49 116 11 4 1627 801 239 150 43 chr5 136653966 136654306 -15882953 - MTD LTR MaLR -20 359 1 4 1627 1240 55 0 0 chr5 136654740 136654886 -15882373 + B1_Mus2 SINE Alu 1 146 -1 4 1627 264 30 0 0 chr5 136654899 136654932 -15882327 + (CAA)n Simple_repeat Simple_repeat 2 34 0 4 1627 240 156 115 0 chr5 136654935 136654987 -15882272 + PB1D9 SINE Alu 7 63 -57 4 1627 246 338 154 9 chr5 136656036 136656257 -15881002 + Lx8 LINE L1 7215 7467 -6 4 1627 475 223 98 0 chr5 136657459 136657571 -15879688 + ID_B1 SINE B4 100 222 -2 4 1627 338 247 37 6 chr5 136658185 136658270 -15878989 + L1MC3 LINE L1 6022 6109 -235 4 1627 934 267 29 0 chr5 136658270 136658476 -15878783 + B3 SINE B2 1 212 -4 4 1627 318 280 24 71 chr5 136658476 136658517 -15878742 + L1MC3 LINE L1 6110 6142 -202 4 1627 357 278 47 67 chr5 136658592 136658785 -15878474 + L1MC3 LINE L1 6487 6675 -1110 4 1627 360 226 14 0 chr5 136658962 136659065 -15878194 + L1MC3 LINE L1 6781 6919 -963 4 1627 362 318 73 34 chr5 136659158 136659337 -15877922 + L1MC3 LINE L1 7094 7279 -506 4 1627 273 208 0 0 chr5 136659632 136659685 -15877574 + ID4_ SINE ID 11 63 -20 4 1627 262 236 28 0 chr5 136659685 136659704 -15877555 + ID SINE ID 11 84 -140 4 1627 615 269 87 6 chr5 136659726 136659898 -15877361 + B3A SINE B2 1 186 -12 4 1627 425 19 19 0 chr5 136659903 136659957 -15877302 + (CA)n Simple_repeat Simple_repeat 1 55 0 4 1627 243 0 0 0 chr5 136659957 136659983 -15877276 + (TC)n Simple_repeat Simple_repeat 1 27 0 4 1627 1397 79 17 0 chr5 136659983 136660160 -15877099 - B2_Mm2 SINE B2 -15 180 1 4 1627 372 260 82 57 chr5 136660217 136660376 -15876883 + ID_B1 SINE B4 62 224 0 4 1627 853 129 57 14 chr5 136660380 136660521 -15876738 + B1_Mus1 SINE Alu 2 148 0 4 1627 222 37 0 0 chr5 136660543 136660570 -15876689 + (CAA)n Simple_repeat Simple_repeat 3 29 0 4 1627 553 190 50 0 chr5 136660582 136660682 -15876577 + PB1D9 SINE Alu 5 109 -11 5 1627 1537 194 32 35 chr5 136660683 136661056 -15876203 - ORR1C2 LTR MaLR -12 372 1 5 1627 607 214 143 0 chr5 136661289 136661429 -15875830 - RSINE1 SINE B4 -2 163 4 5 1627 446 289 118 0 chr5 136661512 136661647 -15875612 - RSINE1 SINE B4 0 165 15 5 1627 1152 88 0 0 chr5 136662454 136662601 -15874658 + B1_Mus1 SINE Alu 2 148 0 5 1627 559 274 30 24 chr5 136663074 136663242 -15874017 - ID_B1 SINE B4 -54 170 2 5 1627 587 167 0 0 chr5 136663262 136663358 -15873901 - B1_Mur3 SINE Alu 0 149 54 5 1627 629 185 98 23 chr5 136663364 136663497 -15873762 + B1_Mur4 SINE Alu 6 148 -2 5 1627 24 0 0 0 chr5 136663504 136663528 -15873731 + AT_rich Low_complexity Low_complexity 1 24 0 5 1627 1737 21 0 0 chr5 136663529 136663722 -15873537 + B2_Mm1a SINE B2 1 193 0 5 1627 320 280 65 30 chr5 136663724 136663923 -15873336 + L1MEf LINE L1 818 1023 -5177 5 1627 309 247 82 0 chr5 136664091 136664176 -15873083 + ID_B1 SINE B4 79 170 -54 5 1627 317 234 91 14 chr5 136664105 136664216 -15873043 + PB1D10 SINE Alu 15 129 -20 5 1627 386 262 99 25 chr5 136664238 136664441 -15872818 + RSINE1 SINE B4 2 224 0 5 1627 705 236 36 0 chr5 136664482 136664647 -15872612 + B4A SINE B4 55 225 -67 5 1627 1014 150 0 0 chr5 136664944 136665091 -15872168 - B1_Mus2 SINE Alu 0 147 1 5 1627 1428 79 16 0 chr5 136665113 136665303 -15871956 - B2_Mm1t SINE B2 0 193 1 5 1627 462 261 126 7 chr5 136665612 136665747 -15871512 + B3A SINE B2 47 197 -1 5 1627 275 180 0 0 chr5 136665751 136665801 -15871458 + B1F SINE Alu 99 148 -1 5 1627 725 124 135 30 chr5 136665808 136665941 -15871318 + B1_Mus1 SINE Alu 1 147 -1 5 1627 214 164 32 16 chr5 136665942 136666004 -15871255 + A-rich Low_complexity Low_complexity 3 65 0 5 1627 420 256 22 17 chr5 136666148 136666268 -15870991 + B3A SINE B2 80 208 -8 5 1627 1219 42 7 0 chr5 136666268 136666412 -15870847 + B1_Mus2 SINE Alu 1 145 -2 5 1627 357 125 0 0 chr5 136666535 136666591 -15870668 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1627 222 219 39 64 chr5 136666824 136666902 -15870357 - PB1D10 SINE Alu -1 116 41 5 1627 1325 103 22 5 chr5 136666934 136667119 -15870140 - B2_Mm2 SINE B2 -5 190 3 5 1627 393 22 0 0 chr5 136667174 136667220 -15870039 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1627 468 271 26 71 chr5 136667232 136667387 -15869872 - B3A SINE B2 -48 150 3 5 1627 690 174 45 15 chr5 136667419 136667553 -15869706 - B1_Mus2 SINE Alu -9 138 1 5 1627 311 180 16 0 chr5 136667590 136667651 -15869608 - PB1 SINE Alu -45 82 21 5 1627 350 350 0 21 chr5 136668137 136668280 -15868979 + GA-rich Low_complexity Low_complexity 1 140 0 5 1627 367 346 0 0 chr5 136668163 136668270 -15868989 + G-rich Low_complexity Low_complexity 4 110 0 5 1627 398 315 30 41 chr5 136668659 136668828 -15868431 + RMER15 LTR ERVL 333 499 -76 5 1627 320 282 13 0 chr5 136669068 136669146 -15868113 - ID4 SINE ID -4 79 1 5 1627 261 301 106 81 chr5 136669265 136669388 -15867871 - B4 SINE B4 -140 152 27 5 1627 353 317 0 9 chr5 136669411 136669516 -15867743 - PB1 SINE Alu -2 125 22 5 1627 716 143 0 9 chr5 136669562 136669675 -15867584 - PB1D9 SINE Alu -6 114 3 5 1627 867 176 42 0 chr5 136669686 136669828 -15867431 - B1_Mus1 SINE Alu 0 148 1 5 1627 378 247 12 0 chr5 136670310 136670391 -15866868 + ID2 SINE ID 1 82 -1 5 1627 277 277 75 115 chr5 136670466 136670573 -15866686 + MT2B LTR ERVL 59 157 -444 5 1627 433 272 9 0 chr5 136670573 136670687 -15866572 + PB1D10 SINE Alu 1 115 -2 5 1627 1100 84 125 12 chr5 136670740 136670908 -15866351 + B2_Mm2 SINE B2 2 188 -7 5 1627 410 256 24 66 chr5 136671170 136671337 -15865922 + RNLTR23 LTR ERVK 483 642 0 5 1627 690 210 80 0 chr5 136671581 136671719 -15865540 - B1_Mur4 SINE Alu 0 150 2 5 1627 404 335 33 60 chr5 136671754 136671938 -15865321 - B3A SINE B2 -18 180 2 5 1627 531 261 36 7 chr5 136671942 136672081 -15865178 - B1_Mur1 SINE Alu -5 144 2 5 1627 594 234 39 0 chr5 136672138 136672266 -15864993 - RSINE1 SINE B4 -22 143 11 5 1627 506 137 288 61 chr5 136672364 136672496 -15864763 + RSINE1 SINE B4 2 163 -2 5 1627 273 309 0 76 chr5 136672540 136672551 -15864708 + ID_B1 SINE B4 80 94 -130 5 1627 2072 80 243 3 chr5 136672560 136672898 -15864361 + MTC LTR MaLR 3 421 0 5 1627 273 309 0 76 chr5 136672898 136672982 -15864277 + ID_B1 SINE B4 95 176 -48 5 1627 449 229 12 43 chr5 136672982 136673002 -15864257 + PB1D10 SINE Alu 14 117 0 5 1627 777 168 47 0 chr5 136673191 136673340 -15863919 - B2_Mm2 SINE B2 -39 156 1 5 1627 1590 42 21 0 chr5 136673420 136673609 -15863650 + B2_Mm1a SINE B2 1 193 0 5 1627 646 232 49 14 chr5 136674099 136674243 -15863016 - B1F1 SINE Alu 0 149 1 5 1627 300 307 32 9 chr5 136675181 136675310 -15861949 + CT-rich Low_complexity Low_complexity 1 131 0 5 1627 312 127 0 0 chr5 136675313 136675368 -15861891 + (T)n Simple_repeat Simple_repeat 1 55 0 5 1627 501 205 42 8 chr5 136675369 136675487 -15861772 - B1_Mur3 SINE Alu 0 149 28 5 1627 807 152 14 20 chr5 136675765 136675913 -15861346 + B1_Mus1 SINE Alu 1 147 -1 5 1627 1166 68 0 0 chr5 136676181 136676328 -15860931 + B1_Mus1 SINE Alu 2 148 0 5 1627 520 125 10 10 chr5 136676710 136676807 -15860452 + (GAAA)n Simple_repeat Simple_repeat 4 100 0 5 1627 351 302 57 0 chr5 136676818 136676924 -15860335 + PB1D10 SINE Alu 5 116 -1 5 1627 570 242 86 0 chr5 136676933 136677061 -15860198 + B1_Mur2 SINE Alu 3 141 -8 5 1627 373 316 45 17 chr5 136677224 136677401 -15859858 + MER90a LTR ERV1 349 530 -84 5 1627 871 131 17 22 chr5 136677450 136677630 -15859629 + CT-rich Low_complexity Low_complexity 1 179 0 5 1627 364 210 87 39 chr5 136678015 136678044 -15859215 + PB1D10 SINE Alu 9 117 0 5 1627 398 200 0 0 chr5 136678044 136678119 -15859140 + ID_B1 SINE B4 149 223 -1 5 1627 1217 56 0 0 chr5 136678296 136678439 -15858820 + B1_Mus2 SINE Alu 2 144 -3 5 1627 801 35 9 17 chr5 136678439 136678554 -15858705 + (GAA)n Simple_repeat Simple_repeat 2 115 0 5 1627 198 0 0 0 chr5 136678554 136678576 -15858683 + (TAG)n Simple_repeat Simple_repeat 1 22 0 5 1627 1448 63 16 0 chr5 136678637 136678827 -15858432 + B2_Mm1t SINE B2 1 193 0 5 1627 869 197 156 11 chr5 136678846 136679026 -15858233 + B3 SINE B2 1 206 -10 5 1627 303 28 0 0 chr5 136679032 136679068 -15858191 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1627 609 264 65 43 chr5 136679079 136679265 -15857994 - B3A SINE B2 -7 191 2 5 1627 1450 55 9 0 chr5 136679747 136679984 -15857275 + ZP3AR Satellite Satellite 1 239 0 5 1627 423 265 0 0 chr5 136679984 136680067 -15857192 + ID4_ SINE ID 1 83 0 5 1627 2349 149 68 57 chr5 136680089 136680559 -15856700 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1627 4183 65 68 23 chr5 136680582 136681200 -15856059 + IAPEz-int LTR ERVK 17 662 -5819 5 1627 445 66 0 32 chr5 136681200 136681263 -15855996 + IAPEz-int LTR ERVK 1359 1419 -5062 5 1627 1785 107 4 4 chr5 136681252 136681514 -15855745 + IAPEz-int LTR ERVK 2236 2497 -5183 5 1627 885 88 24 0 chr5 136681509 136681634 -15855625 + IAPEz-int LTR ERVK 4783 4910 -2770 5 1627 20220 17 2 0 chr5 136681636 136683991 -15853268 + IAPEz-int LTR ERVK 4123 6481 0 5 1627 2349 149 68 57 chr5 136683991 136684461 -15852798 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1627 300 345 21 0 chr5 136684602 136684744 -15852515 - L1MC3 LINE L1 -278 7507 7363 5 1627 192 77 0 0 chr5 136684826 136684852 -15852407 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 5 1627 360 0 0 0 chr5 136684977 136685017 -15852242 + (TC)n Simple_repeat Simple_repeat 1 40 0 5 1627 189 0 0 0 chr5 136685017 136685037 -15852222 + (CA)n Simple_repeat Simple_repeat 1 21 0 5 1627 398 180 65 14 chr5 136685084 136685174 -15852085 + PB1D10 SINE Alu 17 112 -8 5 1627 879 181 0 32 chr5 136685181 136685335 -15851924 + B1_Mur2 SINE Alu 1 149 0 5 1627 426 290 150 21 chr5 136685395 136685561 -15851698 + ID_B1 SINE B4 13 203 -21 5 1627 1330 161 32 0 chr5 136685561 136685779 -15851480 - URR1B DNA MER1_type 0 225 1 5 1627 426 290 150 21 chr5 136685779 136685799 -15851460 + ID_B1 SINE B4 204 223 -1 5 1627 465 227 0 0 chr5 136685967 136686055 -15851204 - PB1D10 SINE Alu -28 89 2 5 1627 315 276 23 0 chr5 136686098 136686185 -15851074 - LTR75 LTR ERVL -35 527 439 5 1627 624 228 7 14 chr5 136686216 136686354 -15850905 + ID_B1 SINE B4 80 216 -8 5 1627 26 30 0 0 chr5 136686821 136686854 -15850405 + AT_rich Low_complexity Low_complexity 1 33 0 5 1627 316 253 12 12 chr5 136687850 136687930 -15849329 - ID2 SINE ID -3 80 1 5 1627 1509 48 4 0 chr5 136687930 136688179 -15849080 - ZP3AR Satellite Satellite -170 249 1 5 1627 211 291 36 0 chr5 136688342 136688397 -15848862 - PB1D10 SINE Alu -9 108 52 5 1627 415 176 125 19 chr5 136688506 136688610 -15848649 - ID_B1 SINE B4 -2 222 108 5 1627 619 282 5 42 chr5 136688719 136688908 -15848351 + B3A SINE B2 1 182 -16 5 1627 859 178 20 0 chr5 136688967 136689113 -15848146 + B1_Mur3 SINE Alu 1 149 0 5 1627 23 68 0 0 chr5 136689127 136689171 -15848088 + AT_rich Low_complexity Low_complexity 1 44 0 5 1627 234 0 0 0 chr5 136689227 136689253 -15848006 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1627 700 247 27 0 chr5 136689265 136689411 -15847848 - RSINE1 SINE B4 -13 152 3 5 1627 321 304 152 0 chr5 136689411 136689536 -15847723 + MER44D DNA MER2_type 556 699 -6 5 1627 995 122 0 25 chr5 136689543 136689703 -15847556 + B2_Mm2 SINE B2 2 157 -38 5 1627 183 80 0 0 chr5 136689703 136689728 -15847531 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 5 1627 298 331 64 6 chr5 136689735 136689908 -15847351 - L1MB5 LINE L1 -61 6113 5931 6 1627 460 212 61 9 chr5 136690050 136690164 -15847095 + PB1D9 SINE Alu 1 120 0 6 1627 998 299 59 43 chr5 136690434 136690937 -15846322 - L1MA8 LINE L1 -355 5936 5423 6 1627 1176 62 7 0 chr5 136690937 136691083 -15846176 - B1_Mm SINE Alu 0 147 1 6 1627 998 299 59 43 chr5 136691083 136691156 -15846103 - L1MA8 LINE L1 -869 5422 5351 6 1627 936 248 10 10 chr5 136691218 136691418 -15845841 - B3 SINE B2 -13 203 4 6 1627 504 0 0 0 chr5 136691514 136691570 -15845689 + (TC)n Simple_repeat Simple_repeat 1 56 0 6 1627 953 243 55 0 chr5 136691588 136691790 -15845469 - ID_B1 SINE B4 -7 217 5 6 1627 375 214 176 97 chr5 136692297 136692473 -15844786 + B2_Mm2 SINE B2 1 190 -5 6 1627 1261 86 23 16 chr5 136692476 136692507 -15844752 - ZP3AR Satellite Satellite -31 31 1 6 1627 299 216 122 0 chr5 136692507 136692581 -15844678 - ID4 SINE ID 0 83 1 6 1627 1261 82 33 25 chr5 136692581 136692812 -15844447 - ZP3AR Satellite Satellite -11 232 1 6 1627 923 270 16 15 chr5 136693546 136693793 -15843466 - ID_B1 SINE B4 -41 251 2 6 1627 759 273 33 9 chr5 136695283 136695494 -15841765 - ID_B1 SINE B4 -8 216 1 6 1627 849 121 0 15 chr5 136695971 136696105 -15841154 - B1_Mur4 SINE Alu -5 145 14 6 1627 364 187 0 142 chr5 136696010 136696116 -15841143 - MT2B LTR ERVL -343 258 168 6 1627 257 285 27 85 chr5 136696828 136696877 -15840382 + YREP_Mm Unknown Unknown 128 169 -1643 6 1627 823 219 12 0 chr5 136696877 136697037 -15840222 - RSINE1 SINE B4 -2 163 2 6 1627 257 285 27 85 chr5 136697037 136697175 -15840084 + YREP_Mm Unknown Unknown 170 303 -1509 6 1627 546 268 26 13 chr5 136697049 136697204 -15840055 - ID_B1 SINE B4 -4 220 64 6 1627 936 133 35 0 chr5 136697330 136697473 -15839786 - B1_Mus1 SINE Alu 0 148 1 6 1627 449 262 56 9 chr5 136697484 136697592 -15839667 - PB1D7 SINE Alu -7 113 1 6 1627 282 29 0 0 chr5 136697678 136697713 -15839546 + (CA)n Simple_repeat Simple_repeat 1 35 0 6 1627 534 251 94 18 chr5 136698183 136698353 -15838906 - B3A SINE B2 -11 187 5 6 1627 486 235 70 42 chr5 136698370 136698512 -15838747 - ID_B1 SINE B4 -3 221 76 6 1627 207 0 0 0 chr5 136698526 136698549 -15838710 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 6 1627 3631 73 106 19 chr5 136698594 136699112 -15838147 + RMER2 LTR ERV1 1 563 -4 6 1627 3448 118 188 34 chr5 136699120 136699775 -15837484 + RMER6A LTR ERVK 1 756 0 6 1627 461 195 0 0 chr5 136699775 136699857 -15837402 - B1F1 SINE Alu -55 94 13 6 1627 375 274 0 31 chr5 136699857 136699873 -15837386 - ID_B1 SINE B4 -52 172 78 6 1627 246 269 141 0 chr5 136700908 136700986 -15836273 - ID_B1 SINE B4 -21 203 115 6 1627 427 349 46 6 chr5 136701472 136701645 -15835614 - MIRb SINE MIR -35 233 54 6 1627 780 91 0 0 chr5 136701660 136701770 -15835489 + (TTCC)n Simple_repeat Simple_repeat 2 111 0 6 1627 1143 56 21 0 chr5 136701773 136701917 -15835342 - B1_Mm SINE Alu 0 147 1 6 1627 503 293 6 77 chr5 136702600 136702770 -15834489 + RSINE1 SINE B4 8 165 0 6 1627 1014 68 68 0 chr5 136702783 136702915 -15834344 + B1_Mus2 SINE Alu 1 141 -6 6 1627 184 0 62 31 chr5 136702918 136702950 -15834309 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 6 1627 594 41 0 0 chr5 136702952 136703025 -15834234 + (GA)n Simple_repeat Simple_repeat 2 74 0 6 1627 877 32 0 0 chr5 136703636 136703762 -15833497 + ZP3AR Satellite Satellite 42 167 -45 6 1627 364 194 14 0 chr5 136704336 136704408 -15832851 - ID2 SINE ID -10 73 1 6 1627 856 277 14 5 chr5 136704845 136705052 -15832207 + ID_B1 SINE B4 10 218 -6 6 1627 500 267 0 0 chr5 136705075 136705180 -15832079 + RSINE1 SINE B4 34 138 -27 6 1627 692 23 0 11 chr5 136705449 136705536 -15831723 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 6 1627 1273 34 0 7 chr5 136705537 136705685 -15831574 - B1_Mus1 SINE Alu 0 148 2 6 1627 390 21 0 0 chr5 136705714 136705761 -15831498 + (TC)n Simple_repeat Simple_repeat 1 47 0 6 1627 674 221 8 0 chr5 136705764 136705895 -15831364 - ID_B1 SINE B4 -7 217 86 6 1627 977 153 0 6 chr5 136705904 136706081 -15831178 + CT-rich Low_complexity Low_complexity 5 180 0 6 1627 686 249 141 0 chr5 136706887 136707064 -15830195 - ID_B1 SINE B4 -5 219 18 6 1628 735 116 0 0 chr5 136708282 136708394 -15828865 + (TTCC)n Simple_repeat Simple_repeat 4 115 0 6 1628 675 196 46 26 chr5 136708396 136708548 -15828711 - ID_B1 SINE B4 -47 245 90 6 1628 1256 48 0 0 chr5 136708784 136708931 -15828328 - B1_Mm SINE Alu 0 147 1 6 1628 630 200 7 62 chr5 136709072 136709216 -15828043 - B3A SINE B2 -62 136 1 6 1628 1185 53 14 0 chr5 136709878 136710056 -15827203 - ZP3AR Satellite Satellite -43 180 1 6 1628 274 328 80 30 chr5 136710626 136710827 -15826432 + L2c LINE L2 3091 3301 -86 6 1628 324 70 0 0 chr5 136710927 136710970 -15826289 + (CCA)n Simple_repeat Simple_repeat 3 45 0 6 1628 537 252 71 0 chr5 136711359 136711486 -15825773 + B1F SINE Alu 1 136 -13 6 1628 1218 68 0 0 chr5 136711486 136711633 -15825626 + B1_Mus1 SINE Alu 2 148 0 6 1628 605 297 57 13 chr5 136712271 136712428 -15824831 - RSINE1 SINE B4 0 165 2 6 1628 399 274 132 53 chr5 136712432 136712659 -15824600 - B4A SINE B4 0 292 48 6 1628 525 272 151 5 chr5 136713196 136713388 -15823871 - ID_B1 SINE B4 0 224 5 6 1628 598 265 154 7 chr5 136714542 136714727 -15822532 + ID_B1 SINE B4 9 224 0 6 1628 1205 42 14 0 chr5 136715033 136715177 -15822082 + B1_Mm SINE Alu 2 147 0 6 1628 1011 112 35 0 chr5 136715199 136715342 -15821917 + B1_Mus1 SINE Alu 1 148 0 6 1628 180 0 0 0 chr5 136715351 136715371 -15821888 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6 1628 228 35 0 0 chr5 136715371 136715400 -15821859 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 6 1628 403 193 40 201 chr5 136715459 136715608 -15821651 + B1F SINE Alu 18 142 -7 6 1628 616 246 61 14 chr5 136715618 136715766 -15821493 + RSINE1 SINE B4 3 157 -8 6 1628 315 0 0 0 chr5 136716676 136716711 -15820548 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1628 733 278 116 8 chr5 136716714 136716964 -15820295 - B4A SINE B4 -12 280 4 6 1628 288 53 0 0 chr5 136716972 136717010 -15820249 + (TG)n Simple_repeat Simple_repeat 1 38 0 6 1628 224 308 152 9 chr5 136717615 136717720 -15819539 + B1_Mus1 SINE Alu 29 148 0 6 1628 366 294 32 32 chr5 136717711 136717834 -15819425 + B4 SINE B4 76 198 -94 6 1628 801 144 0 0 chr5 136717729 136717861 -15819398 + B1_Mur4 SINE Alu 6 137 -13 6 1628 287 25 0 24 chr5 136717861 136717902 -15819357 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 6 1628 808 230 12 30 chr5 136717907 136718073 -15819186 + RSINE1 SINE B4 3 165 0 6 1628 291 71 0 0 chr5 136718092 136718134 -15819125 + (CAA)n Simple_repeat Simple_repeat 3 44 0 6 1628 236 170 0 19 chr5 136718338 136718392 -15818867 + CT-rich Low_complexity Low_complexity 1 53 0 6 1628 314 320 97 52 chr5 136718681 136718836 -15818423 + RSINE1 SINE B4 4 165 0 6 1628 427 0 0 0 chr5 136718897 136718953 -15818306 + L1Md_T LINE L1 6527 6582 0 6 1628 285 115 262 25 chr5 136718968 136719048 -15818211 + B1F2 SINE Alu 49 147 -2 6 1628 548 178 65 0 chr5 136719332 136719439 -15817820 + RSINE1 SINE B4 4 117 -48 6 1628 408 20 0 0 chr5 136719439 136719488 -15817771 + (CA)n Simple_repeat Simple_repeat 1 49 0 6 1628 414 16 31 16 chr5 136720361 136720425 -15816834 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1628 215 296 7 47 chr5 136720814 136720963 -15816296 + (CCCCAG)n Simple_repeat Simple_repeat 2 144 0 6 1628 308 257 111 28 chr5 136721588 136721696 -15815563 + PB1D10 SINE Alu 1 117 0 6 1628 627 145 224 0 chr5 136722735 136722887 -15814372 - B2_Mm2 SINE B2 -5 190 5 6 1628 744 177 63 7 chr5 136722932 136723074 -15814185 - B1_Mur4 SINE Alu 0 150 1 6 1628 368 169 65 0 chr5 136723430 136723507 -15813752 - ID4_ SINE ID -1 82 1 6 1628 1335 57 10 5 chr5 136723507 136723754 -15813505 - ZP3AR Satellite Satellite -11 248 1 6 1628 320 253 0 39 chr5 136725618 136725696 -15811563 - ID4_ SINE ID -8 75 1 6 1628 1478 58 5 0 chr5 136725696 136725955 -15811304 - ZP3AR Satellite Satellite -11 260 1 6 1628 510 240 24 16 chr5 136725961 136726088 -15811171 - B1F SINE Alu -1 148 21 6 1628 321 229 93 127 chr5 136726643 136726703 -15810556 - B4A SINE B4 -19 273 129 6 1628 342 189 167 0 chr5 136726703 136726793 -15810466 - B1F2 SINE Alu -1 148 44 6 1628 308 325 80 88 chr5 136726829 136727055 -15810204 - B4A SINE B4 -68 224 1 6 1628 1109 129 80 14 chr5 136727621 136727833 -15809426 + URR1A DNA MER1_type 1 226 0 6 1628 2618 32 8 34 chr5 136727839 136728191 -15809068 + L1Md_F2 LINE L1 6240 6582 0 6 1628 295 247 25 0 chr5 136728316 136728397 -15808862 - ZP3AR Satellite Satellite -87 125 43 6 1628 261 119 0 0 chr5 136728637 136728679 -15808580 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1628 348 269 0 0 chr5 136728810 136728888 -15808371 - PB1 SINE Alu -43 84 7 6 1628 631 295 73 25 chr5 136729108 136729383 -15807876 - B4A SINE B4 -3 289 2 6 1628 400 229 24 0 chr5 136729571 136729654 -15807605 - B3 SINE B2 -10 206 122 6 1628 247 324 0 0 chr5 136729674 136729745 -15807514 - PB1D10 SINE Alu -7 110 40 6 1628 463 145 13 0 chr5 136730184 136730260 -15806999 - B4 SINE B4 -215 77 1 6 1628 652 236 91 11 chr5 136730393 136730569 -15806690 - B3A SINE B2 -6 192 3 7 1628 226 360 76 33 chr5 136730569 136730779 -15806480 + ORR1E LTR MaLR 3 221 -138 7 1628 395 195 0 58 chr5 136730906 136730993 -15806266 - ID4 SINE ID -1 82 1 7 1628 1494 48 1 3 chr5 136730993 136731511 -15805748 - ZP3AR Satellite Satellite -11 516 1 7 1628 442 244 9 9 chr5 136731545 136731661 -15805598 - PB1D10 SINE Alu 0 117 2 7 1628 382 197 13 0 chr5 136733044 136733120 -15804139 + RSINE1 SINE B4 62 138 -27 7 1628 384 77 0 0 chr5 136733161 136733213 -15804046 + (TGAA)n Simple_repeat Simple_repeat 2 53 0 7 1628 23 0 0 0 chr5 136733215 136733238 -15804021 + AT_rich Low_complexity Low_complexity 1 23 0 7 1628 762 204 108 16 chr5 136733240 136733434 -15803825 + B3 SINE B2 1 212 -4 7 1628 1141 120 5 20 chr5 136734257 136734304 -15802955 - ZP3AR Satellite Satellite -19 193 149 7 1628 231 270 0 86 chr5 136734304 136734385 -15802874 - ID4 SINE ID -9 74 1 7 1628 1276 34 0 0 chr5 136734385 136734560 -15802699 - ZP3AR Satellite Satellite -11 201 27 7 1628 911 187 90 15 chr5 136734639 136734840 -15802419 + B3 SINE B2 1 216 0 7 1628 1001 208 46 12 chr5 136736229 136736550 -15800709 + MTEa LTR MaLR 1 379 0 7 1628 353 131 81 14 chr5 136737449 136737549 -15799710 + B1_Mur1 SINE Alu 2 147 -2 7 1628 509 275 0 30 chr5 136737619 136737754 -15799505 + ZP3AR Satellite Satellite 36 166 -46 7 1628 207 0 0 0 chr5 136737797 136737820 -15799439 + (TAAAAA)n Simple_repeat Simple_repeat 3 25 0 7 1628 182 349 0 23 chr5 136738500 136738588 -15798671 + L2 LINE L2 2411 2496 -923 7 1628 278 280 13 0 chr5 136738700 136738775 -15798484 - ID4_ SINE ID -7 76 1 7 1628 492 202 50 0 chr5 136738775 136738874 -15798385 - ZP3AR Satellite Satellite -66 146 43 7 1628 956 123 37 0 chr5 136739135 136739297 -15797962 - URR1A DNA MER1_type -1 225 58 7 1628 361 278 74 67 chr5 136739484 136739619 -15797640 + ID_B1 SINE B4 65 200 -24 7 1628 294 29 0 0 chr5 136739623 136739658 -15797601 + (CAAG)n Simple_repeat Simple_repeat 1 35 0 7 1628 537 16 0 0 chr5 136739718 136739780 -15797479 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1628 945 199 73 19 chr5 136739795 136740000 -15797259 + B3 SINE B2 1 216 0 7 1628 1392 47 11 5 chr5 136740006 136740197 -15797062 + B2_Mm1a SINE B2 2 193 0 7 1628 768 11 0 0 chr5 136740225 136740319 -15796940 - B2_Mm1t SINE B2 -99 94 1 7 1628 344 268 126 31 chr5 136740327 136740454 -15796805 + B4 SINE B4 106 244 -48 7 1628 317 297 107 23 chr5 136740487 136740618 -15796641 - B1F1 SINE Alu 0 149 8 7 1628 1048 218 0 0 chr5 136740653 136740841 -15796418 + B3 SINE B2 1 188 -28 7 1628 537 16 0 0 chr5 136740841 136740903 -15796356 + (CA)n Simple_repeat Simple_repeat 2 63 0 7 1628 559 218 148 0 chr5 136741593 136741735 -15795524 + RSINE1 SINE B4 2 164 -1 7 1628 245 51 26 0 chr5 136742587 136742626 -15794633 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 7 1628 203 171 0 0 chr5 136744670 136744711 -15792548 + A-rich Low_complexity Low_complexity 1 41 0 7 1628 189 74 0 0 chr5 136746198 136746225 -15791034 + (CCCCCA)n Simple_repeat Simple_repeat 1 27 0 7 1628 27 0 0 0 chr5 136747067 136747094 -15790165 + AT_rich Low_complexity Low_complexity 1 27 0 7 1628 213 39 0 0 chr5 136747731 136747757 -15789502 + (TAA)n Simple_repeat Simple_repeat 2 27 0 7 1628 21 0 0 0 chr5 136748849 136748870 -15788389 + AT_rich Low_complexity Low_complexity 1 21 0 7 1628 206 195 60 12 chr5 136750573 136750656 -15786603 + (CAGGC)n Simple_repeat Simple_repeat 4 90 0 7 1628 524 196 286 0 chr5 136751550 136751718 -15785541 - ID_B1 SINE B4 -7 217 2 7 1628 234 0 0 0 chr5 136752130 136752156 -15785103 + (A)n Simple_repeat Simple_repeat 1 26 0 7 1628 934 230 5 0 chr5 136752156 136752352 -15784907 - B3 SINE B2 -16 200 4 7 1628 544 227 117 0 chr5 136752376 136752504 -15784755 - B1_Mur2 SINE Alu -6 143 1 7 1628 825 168 213 6 chr5 136752525 136752699 -15784560 - B3 SINE B2 -6 210 1 7 1628 212 294 116 12 chr5 136753168 136753254 -15784005 - PB1D10 SINE Alu -10 107 13 7 1628 252 222 0 0 chr5 136753433 136753478 -15783781 - PB1D9 SINE Alu -75 45 1 7 1628 1060 169 45 5 chr5 136753491 136753693 -15783566 - B3 SINE B2 0 216 7 7 1628 234 283 73 124 chr5 136753978 136754115 -15783144 - MT2B LTR ERVL -302 299 170 7 1628 271 297 77 29 chr5 136754019 136754033 -15783226 - ID_B1 SINE B4 -37 187 126 7 1628 353 183 146 0 chr5 136754033 136754115 -15783144 - PB1D7 SINE Alu -21 99 6 7 1628 238 333 32 32 chr5 136754303 136754396 -15782863 - PB1D10 SINE Alu -1 116 24 7 1628 230 209 104 0 chr5 136754530 136754597 -15782662 - ID4 SINE ID -9 74 1 7 1628 218 246 125 42 chr5 136754778 136754850 -15782409 - B3 SINE B2 -137 79 2 7 1628 620 211 44 29 chr5 136754880 136755017 -15782242 + B1_Mur2 SINE Alu 2 140 -9 7 1628 344 295 29 58 chr5 136755033 136755170 -15782089 + RSINE1 SINE B4 12 144 -21 7 1628 510 202 21 0 chr5 136755692 136755786 -15781473 + PB1D10 SINE Alu 3 98 -19 7 1628 326 254 35 21 chr5 136755823 136755946 -15781313 + ID4 SINE ID 8 127 -25 7 1628 317 275 0 21 chr5 136756250 136756343 -15780916 + ID_B1 SINE B4 80 170 -54 7 1628 312 258 51 10 chr5 136756263 136756361 -15780898 + PB1D10 SINE Alu 11 112 -5 7 1628 292 186 39 19 chr5 136756833 136756937 -15780322 + GA-rich Low_complexity Low_complexity 3 108 0 7 1628 241 208 38 89 chr5 136757636 136757715 -15779544 - B1F SINE Alu -1 148 74 7 1628 556 248 82 13 chr5 136757745 136757904 -15779355 - ID_B1 SINE B4 -41 183 14 7 1628 21 36 0 0 chr5 136758006 136758034 -15779225 + AT_rich Low_complexity Low_complexity 1 28 0 7 1628 272 282 13 13 chr5 136759065 136759144 -15778115 - ID4_ SINE ID -2 81 3 7 1628 485 287 53 2 chr5 136759300 136759446 -15777813 + ID_B1 SINE B4 71 223 -1 7 1628 662 289 101 19 chr5 136759885 136760153 -15777106 + B4A SINE B4 3 292 0 7 1628 21 0 0 0 chr5 136760533 136760554 -15776705 + AT_rich Low_complexity Low_complexity 1 21 0 7 1628 234 0 0 0 chr5 136760554 136760580 -15776679 + (CAA)n Simple_repeat Simple_repeat 2 27 0 7 1628 475 167 0 0 chr5 136760599 136760677 -15776582 + ZP3AR Satellite Satellite 45 122 -90 7 1628 278 241 0 0 chr5 136761488 136761546 -15775713 - B4 SINE B4 -18 274 217 7 1628 180 0 0 0 chr5 136761574 136761594 -15775665 + (TG)n Simple_repeat Simple_repeat 2 21 0 7 1628 451 261 182 6 chr5 136761628 136761809 -15775450 - B4 SINE B4 -63 229 17 7 1628 228 154 96 0 chr5 136762475 136762527 -15774732 - RMER30 DNA MER1_type -145 57 1 7 1628 972 189 11 11 chr5 136763380 136763562 -15773697 + B4 SINE B4 6 187 -105 7 1628 1331 229 50 6 chr5 136764044 136764364 -15772895 + MTEa LTR MaLR 39 372 -7 7 1628 808 249 65 65 chr5 136765050 136765342 -15771917 - B4A SINE B4 0 292 1 7 1628 23 54 0 0 chr5 136765400 136765437 -15771822 + AT_rich Low_complexity Low_complexity 1 37 0 7 1628 226 288 17 0 chr5 136766326 136766385 -15770874 - ID_B1 SINE B4 -116 108 49 7 1628 312 286 37 37 chr5 136766623 136766732 -15770527 + PB1D10 SINE Alu 9 117 0 7 1628 261 269 0 15 chr5 136766729 136766797 -15770462 + B4 SINE B4 11 77 -215 7 1628 568 276 48 7 chr5 136766798 136766944 -15770315 + RSINE1 SINE B4 11 162 -3 7 1628 724 274 19 38 chr5 136766993 136767202 -15770057 + B4A SINE B4 75 279 -13 7 1628 27 0 0 0 chr5 136767520 136767547 -15769712 + AT_rich Low_complexity Low_complexity 1 27 0 7 1628 441 306 7 39 chr5 136767832 136767985 -15769274 - B1_Mur1 SINE Alu -1 148 1 7 1628 24 0 0 0 chr5 136767995 136768019 -15769240 + AT_rich Low_complexity Low_complexity 1 24 0 7 1628 394 333 41 0 chr5 136768123 136768246 -15769013 - RSINE1 SINE B4 -36 129 2 7 1628 228 234 62 0 chr5 136768383 136768447 -15768812 + ZP3AR Satellite Satellite 25 92 -120 7 1628 645 167 109 61 chr5 136770212 136770359 -15766900 + ID_B1 SINE B4 3 156 -68 7 1628 333 190 75 97 chr5 136770286 136770379 -15766880 + PB1D10 SINE Alu 12 102 -15 7 1628 21 0 0 0 chr5 136770451 136770472 -15766787 + AT_rich Low_complexity Low_complexity 1 21 0 7 1628 777 155 0 15 chr5 136770480 136770611 -15766648 - B1_Mus1 SINE Alu -19 129 1 7 1628 31 0 0 0 chr5 136770727 136770758 -15766501 + AT_rich Low_complexity Low_complexity 1 31 0 7 1628 228 279 113 41 chr5 136771277 136771374 -15765885 - PB1D10 SINE Alu -12 105 2 7 1628 213 39 0 0 chr5 136771388 136771414 -15765845 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1628 225 213 0 0 chr5 136771415 136771462 -15765797 - PB1D7 SINE Alu -70 50 4 7 1628 343 192 79 0 chr5 136771462 136771528 -15765731 - B4A SINE B4 -204 88 7 7 1628 405 0 0 0 chr5 136771900 136771945 -15765314 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1628 267 232 0 18 chr5 136771954 136772011 -15765248 - B4 SINE B4 -23 269 214 7 1628 280 293 80 0 chr5 136772005 136772080 -15765179 - ID4_ SINE ID -2 81 1 7 1628 472 211 154 58 chr5 136772080 136772234 -15765025 - B4 SINE B4 -66 226 58 7 1628 324 301 58 0 chr5 136772260 136772363 -15764896 - PB1D10 SINE Alu -4 113 5 7 1628 828 164 57 0 chr5 136773175 136773315 -15763944 - RSINE1 SINE B4 -6 159 12 7 1628 552 245 41 27 chr5 136773433 136773580 -15763679 + ID_B1 SINE B4 64 212 -12 7 1628 183 80 0 0 chr5 136773581 136773606 -15763653 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1628 414 0 0 0 chr5 136774248 136774294 -15762965 + (TC)n Simple_repeat Simple_repeat 1 46 0 8 1628 198 0 0 0 chr5 136774294 136774315 -15762944 + (CA)n Simple_repeat Simple_repeat 1 22 0 8 1628 1018 254 28 67 chr5 136774317 136774600 -15762659 - B4 SINE B4 0 292 21 8 1628 219 36 0 0 chr5 136775238 136775266 -15761993 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 8 1628 405 220 9 83 chr5 136775556 136775665 -15761594 + ZP3AR Satellite Satellite 17 117 -95 8 1628 329 255 131 9 chr5 136776244 136776351 -15760908 - PB1D9 SINE Alu 0 120 1 8 1628 649 209 7 7 chr5 136776351 136776418 -15760841 - B4 SINE B4 -208 84 18 8 1628 1182 41 0 0 chr5 136777518 136777663 -15759596 - B1_Mus1 SINE Alu -2 146 2 8 1628 608 228 177 12 chr5 136777663 136777827 -15759432 + B4 SINE B4 102 292 0 8 1628 410 222 12 0 chr5 136778041 136778122 -15759137 - ID SINE ID -142 82 1 8 1628 246 318 0 15 chr5 136778078 136778145 -15759114 - ZP3AR Satellite Satellite -127 85 20 8 1628 804 229 167 0 chr5 136778581 136778773 -15758486 + ID_B1 SINE B4 1 224 0 8 1628 547 235 113 0 chr5 136778788 136778903 -15758356 + RSINE1 SINE B4 12 139 -26 8 1628 507 17 0 0 chr5 136778903 136778963 -15758296 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1628 459 125 0 0 chr5 136779275 136779347 -15757912 + (CGTG)n Simple_repeat Simple_repeat 1 72 0 8 1628 210 230 0 47 chr5 136779348 136779412 -15757847 + GA-rich Low_complexity Low_complexity 3 63 0 8 1628 400 325 109 5 chr5 136780255 136780465 -15756794 + L1MD2 LINE L1 5699 5930 -429 8 1628 685 212 20 33 chr5 136781027 136781178 -15756081 + B1F SINE Alu 1 149 0 8 1628 638 162 81 0 chr5 136781734 136781845 -15755414 + ZP3AR Satellite Satellite 47 166 -46 8 1628 231 286 0 0 chr5 136781840 136781889 -15755370 + ID4_ SINE ID 34 82 -1 8 1628 545 222 45 45 chr5 136782944 136783076 -15754183 + B1F2 SINE Alu 12 143 -6 8 1628 444 206 31 42 chr5 136784711 136784807 -15752452 - RSINE1 SINE B4 -57 108 14 8 1628 201 175 0 0 chr5 136784844 136784884 -15752375 + (CATA)n Simple_repeat Simple_repeat 4 43 0 8 1628 366 296 188 34 chr5 136784899 136785133 -15752126 - B4 SINE B4 -18 274 5 8 1628 361 179 134 49 chr5 136785288 136785370 -15751889 + PB1D10 SINE Alu 29 117 0 8 1628 402 115 0 0 chr5 136785465 136785526 -15751733 + (GGGGA)n Simple_repeat Simple_repeat 1 61 0 8 1628 1126 38 0 8 chr5 136785997 136786130 -15751129 - B1_Mm SINE Alu -14 133 2 8 1628 244 288 30 15 chr5 136786334 136786401 -15750858 - ID4_ SINE ID -15 68 1 8 1628 492 273 50 57 chr5 136786401 136786560 -15750699 - ZP3AR Satellite Satellite -11 201 44 8 1628 197 273 115 13 chr5 136789862 136789940 -15747319 - L4 LINE RTE -1626 403 318 8 1628 595 302 103 55 chr5 136790507 136790780 -15746479 - B4A SINE B4 -2 290 5 8 1628 460 238 38 0 chr5 136790973 136791078 -15746181 - PB1 SINE Alu -18 109 1 8 1628 495 282 53 0 chr5 136791109 136791240 -15746019 - B1F2 SINE Alu -11 138 1 8 1628 587 284 48 19 chr5 136791363 136791571 -15745688 - ID_B1 SINE B4 -7 217 4 8 1628 255 346 0 12 chr5 136791647 136791729 -15745530 - ID_B1 SINE B4 -62 162 82 8 1628 526 284 65 47 chr5 136792574 136792744 -15744515 - B4A SINE B4 -119 173 1 8 1628 467 263 127 0 chr5 136792806 136792924 -15744335 + RSINE1 SINE B4 4 136 -29 8 1628 22 35 0 0 chr5 136792950 136792979 -15744280 + AT_rich Low_complexity Low_complexity 1 29 0 8 1628 578 204 0 0 chr5 136792981 136793079 -15744180 + B1_Mus2 SINE Alu 1 98 -49 8 1628 440 278 35 0 chr5 136793334 136793449 -15743810 - ID_B1 SINE B4 -1 223 105 8 1628 335 291 122 30 chr5 136793449 136793460 -15743799 - B1F1 SINE Alu 0 144 7 8 1628 472 257 9 9 chr5 136793508 136793618 -15743641 - PB1D10 SINE Alu -2 115 6 8 1628 244 231 28 104 chr5 136793528 136793634 -15743625 - MT2B2 LTR ERVL -333 251 154 8 1628 201 250 0 0 chr5 136793643 136793687 -15743572 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 8 1628 276 30 0 0 chr5 136793903 136793936 -15743323 + (TG)n Simple_repeat Simple_repeat 1 33 0 8 1628 203 188 0 20 chr5 136794008 136794057 -15743202 + G-rich Low_complexity Low_complexity 4 51 0 8 1628 1326 234 64 24 chr5 136794312 136794640 -15742619 + MTEa LTR MaLR 37 377 -2 8 1628 684 268 74 20 chr5 136795263 136795465 -15741794 + ID_B1 SINE B4 3 215 -9 8 1628 213 196 0 0 chr5 136795466 136795522 -15741737 + (CCAA)n Simple_repeat Simple_repeat 4 59 0 8 1628 613 292 66 9 chr5 136797324 136797535 -15739724 + ID_B1 SINE B4 2 224 0 8 1628 688 243 40 20 chr5 136797608 136797759 -15739500 - RSINE1 SINE B4 -8 157 4 8 1628 369 263 41 21 chr5 136797836 136797933 -15739326 - RSINE1 SINE B4 -61 104 6 8 1628 481 266 31 24 chr5 136798307 136798434 -15738825 - B1_Mur3 SINE Alu -19 130 3 8 1628 755 196 88 0 chr5 136798434 136798468 -15738791 - ID SINE ID -140 84 38 8 1628 807 211 62 81 chr5 136799008 136799219 -15738040 + ID_B1 SINE B4 2 208 -16 8 1628 484 215 141 0 chr5 136799475 136799596 -15737663 + B1F SINE Alu 5 142 -7 8 1628 617 250 36 0 chr5 136799844 136799984 -15737275 + B1_Mur1 SINE Alu 2 146 -3 8 1628 843 278 28 9 chr5 136800807 136801025 -15736234 + B4 SINE B4 2 223 -69 8 1628 313 319 20 50 chr5 136801028 136801127 -15736132 - B1F2 SINE Alu -47 102 7 8 1628 325 276 20 39 chr5 136801184 136801286 -15735973 - PB1 SINE Alu -7 120 21 8 1628 276 53 0 0 chr5 136801299 136801337 -15735922 + (TG)n Simple_repeat Simple_repeat 1 38 0 8 1628 666 285 135 41 chr5 136801349 136801616 -15735643 - B4A SINE B4 0 292 1 8 1628 384 267 0 11 chr5 136803199 136803290 -15733969 - B1_Mur1 SINE Alu -43 106 17 8 1628 244 257 27 13 chr5 136803298 136803373 -15733886 - L2a LINE L2 -247 3179 3104 8 1628 302 285 2 4 chr5 136803571 136803640 -15733619 - RSINE1 SINE B4 -222 70 3 8 1628 1004 203 19 19 chr5 136803665 136803881 -15733378 + B3 SINE B2 1 216 0 8 1628 831 245 96 0 chr5 136803902 136804090 -15733169 + B3 SINE B2 1 206 -10 8 1628 242 307 49 74 chr5 136804241 136804322 -15732937 + B4A SINE B4 84 162 -130 8 1628 446 209 55 37 chr5 136804255 136804364 -15732895 + PB1D10 SINE Alu 7 117 0 8 1628 615 250 0 36 chr5 136805048 136805173 -15732086 + ID_B1 SINE B4 93 213 -11 8 1628 985 145 6 6 chr5 136805173 136805353 -15731906 + GA-rich Low_complexity Low_complexity 1 180 0 8 1628 615 250 0 36 chr5 136805353 136805364 -15731895 + ID_B1 SINE B4 214 224 0 8 1628 399 169 38 38 chr5 136806872 136806952 -15730307 - PB1D10 SINE Alu -2 115 36 8 1628 578 82 12 0 chr5 136806961 136807046 -15730213 + (TC)n Simple_repeat Simple_repeat 1 86 0 8 1628 334 286 0 25 chr5 136807052 136807131 -15730128 - ID_B1 SINE B4 -6 218 142 8 1628 254 293 106 124 chr5 136807131 136807165 -15730094 - PB1D10 SINE Alu -6 111 1 8 1628 268 214 21 116 chr5 136807360 136807375 -15729884 + MT2B2 LTR ERVL 154 159 -425 8 1628 492 244 25 42 chr5 136807375 136807495 -15729764 + PB1D7 SINE Alu 2 119 -1 8 1628 183 77 55 55 chr5 136807524 136807579 -15729680 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 8 1628 585 179 0 10 chr5 136807580 136807676 -15729583 + RSINE1 SINE B4 34 128 -37 8 1628 873 110 244 6 chr5 136807688 136807844 -15729415 - B2_Mm2 SINE B2 -1 194 2 8 1628 447 19 0 0 chr5 136807882 136807934 -15729325 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1628 874 240 129 8 chr5 136808094 136808358 -15728901 + MTE2b LTR MaLR 22 317 -62 8 1628 185 333 0 0 chr5 136809386 136809437 -15727822 + MIRc SINE MIR 102 152 -116 8 1628 1251 41 0 0 chr5 136809591 136809738 -15727521 + B1_Mus2 SINE Alu 1 147 0 8 1628 1417 73 17 0 chr5 136809742 136809920 -15727339 - B2_Mm2 SINE B2 -14 181 1 8 1628 356 247 99 40 chr5 136809930 136810031 -15727228 - PB1 SINE Alu -2 125 19 8 1628 233 269 30 61 chr5 136810348 136810447 -15726812 - MLT1N2 LTR MaLR -402 160 65 8 1628 316 303 18 9 chr5 136810385 136810495 -15726764 + PB1D10 SINE Alu 6 116 -1 8 1628 230 174 0 148 chr5 136810532 136810580 -15726679 + B1_Mus2 SINE Alu 62 101 -46 8 1628 637 206 92 17 chr5 136810580 136810752 -15726507 + ID_B1 SINE B4 3 196 -96 8 1628 377 274 93 8 chr5 136811252 136811370 -15725889 - B1F1 SINE Alu -7 142 15 8 1628 587 233 31 0 chr5 136811370 136811408 -15725851 - ID_B1 SINE B4 -2 217 7 8 1628 457 208 93 9 chr5 136811415 136811522 -15725737 - PB1D10 SINE Alu -1 116 1 8 1628 1395 164 222 14 chr5 136812122 136812469 -15724790 + MTD LTR MaLR 1 419 0 8 1628 512 224 220 1 chr5 136812565 136812713 -15724546 + ID_B1 SINE B4 37 215 -9 8 1628 257 0 0 29 chr5 136812714 136812748 -15724511 + (CAAG)n Simple_repeat Simple_repeat 1 33 0 8 1628 291 206 28 56 chr5 136813560 136813632 -15723627 - B3A SINE B2 -128 70 1 8 1628 368 187 26 26 chr5 136813889 136813966 -15723293 + RMER30 DNA MER1_type 15 91 -111 8 1628 296 194 0 75 chr5 136814743 136814810 -15722449 + ID4_ SINE ID 3 64 -19 8 1628 1287 101 11 0 chr5 136814845 136815024 -15722235 + B2_Mm1t SINE B2 1 181 -12 9 1628 356 127 0 18 chr5 136815052 136815108 -15722151 + B2_Mm2 SINE B2 47 101 -94 9 1628 237 65 0 0 chr5 136815510 136815541 -15721718 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 9 1628 364 298 11 0 chr5 136815544 136815638 -15721621 + RMER30 DNA MER1_type 108 202 0 8 1628 649 141 197 30 chr5 136815724 136815856 -15721403 + MTC LTR MaLR 170 323 -98 9 1628 30 0 0 0 chr5 136816477 136816507 -15720752 + AT_rich Low_complexity Low_complexity 1 30 0 9 1628 447 310 58 0 chr5 136816507 136816662 -15720597 - RSINE1 SINE B4 0 165 2 9 1628 441 81 0 0 chr5 136816675 136816737 -15720522 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 1628 734 197 38 0 chr5 136816738 136816870 -15720389 - B3 SINE B2 -65 151 15 9 1628 225 267 175 62 chr5 136816974 136817054 -15720205 + RSINE1 SINE B4 76 164 -1 9 1628 339 244 53 43 chr5 136817067 136817161 -15720098 + HAL1-3A_ME LINE L1 1977 2071 -787 9 1628 682 270 57 29 chr5 136817522 136817732 -15719527 - ID_B1 SINE B4 -7 217 2 9 1628 3474 33 0 2 chr5 136817869 136818264 -15718995 - MTA_Mm LTR MaLR 0 396 3 9 1628 704 242 137 6 chr5 136818392 136818575 -15718684 + MTD LTR MaLR 1 207 -212 9 1628 294 183 26 177 chr5 136818546 136818659 -15718600 + MTD LTR MaLR 324 419 0 9 1628 382 252 151 24 chr5 136818881 136819007 -15718252 - B1F1 SINE Alu -7 142 1 9 1628 422 208 72 10 chr5 136819021 136819118 -15718141 - PB1D7 SINE Alu 0 120 18 9 1628 239 300 49 24 chr5 136819075 136819157 -15718102 - B4 SINE B4 -147 145 62 9 1628 572 273 39 0 chr5 136819845 136819973 -15717286 - RSINE1 SINE B4 -31 134 2 9 1628 396 267 20 0 chr5 136820218 136820319 -15716940 + MTE2b LTR MaLR 11 113 -266 9 1628 230 182 91 0 chr5 136820358 136820413 -15716846 + MTE2b LTR MaLR 312 371 -8 9 1628 743 97 142 27 chr5 136820537 136820685 -15716574 - B2_Mm2 SINE B2 -11 184 20 9 1628 924 278 5 5 chr5 136820786 136821003 -15716256 + B4 SINE B4 3 219 -73 9 1628 260 45 0 64 chr5 136821044 136821091 -15716168 + (A)n Simple_repeat Simple_repeat 1 44 0 9 1628 1025 183 128 19 chr5 136821256 136821513 -15715746 + MTC LTR MaLR 137 421 0 9 1628 466 336 37 41 chr5 136821681 136821926 -15715333 - L1MD LINE L1 -2057 4089 3846 9 1628 464 347 76 7 chr5 136822089 136822234 -15715025 + RSINE1 SINE B4 3 157 -8 9 1628 283 247 93 12 chr5 136822280 136822366 -15714893 - RSINE1 SINE B4 -34 131 39 9 1628 503 265 160 18 chr5 136822771 136822940 -15714319 - ID_B1 SINE B4 0 224 32 9 1628 202 139 23 0 chr5 136823359 136823402 -15713857 + A-rich Low_complexity Low_complexity 4 47 0 9 1628 360 0 0 0 chr5 136824386 136824426 -15712833 + (GA)n Simple_repeat Simple_repeat 1 40 0 9 1628 405 226 75 47 chr5 136824448 136824555 -15712704 - RSINE1 SINE B4 -43 122 13 9 1628 922 133 16 0 chr5 136824658 136824786 -15712473 - B1_Mur3 SINE Alu -18 131 2 9 1628 218 244 11 43 chr5 136824912 136825006 -15712253 + (TTA)n Simple_repeat Simple_repeat 2 92 0 9 1628 461 293 0 68 chr5 136825007 136825139 -15712120 - RSINE1 SINE B4 0 165 43 9 1628 207 0 0 0 chr5 136825228 136825251 -15712008 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 9 1628 358 198 10 81 chr5 136825508 136825607 -15711652 + ID_B1 SINE B4 133 224 0 9 1628 1443 68 16 5 chr5 136825853 136826044 -15711215 + B2_Mm2 SINE B2 2 194 -1 9 1628 1193 82 0 0 chr5 136826241 136826388 -15710871 + B1_Mus2 SINE Alu 1 147 0 9 1628 1722 21 0 0 chr5 136826476 136826668 -15710591 + B2_Mm1a SINE B2 2 193 0 9 1628 400 223 67 48 chr5 136826840 136826966 -15710293 - PB1D10 SINE Alu -18 131 1 9 1628 335 336 42 35 chr5 136826966 136827024 -15710235 - ID SINE ID -139 85 27 9 1628 241 185 148 0 chr5 136826997 136827051 -15710208 - ID_B1 SINE B4 -22 202 141 9 1628 286 267 29 19 chr5 136827947 136828050 -15709209 + (TCCA)n Simple_repeat Simple_repeat 4 107 0 9 1628 223 259 36 27 chr5 136828117 136828228 -15709031 + (TCCA)n Simple_repeat Simple_repeat 1 112 0 9 1628 469 198 68 19 chr5 136829459 136829562 -15707697 + B4 SINE B4 185 292 0 9 1628 695 184 288 13 chr5 136829886 136830082 -15707177 - MTD LTR MaLR -35 384 158 9 1628 464 220 89 10 chr5 136830077 136830178 -15707081 - B1_Mur2 SINE Alu -40 109 1 9 1628 684 309 50 43 chr5 136830316 136830538 -15706721 + B4 SINE B4 4 229 -63 9 1628 204 40 0 0 chr5 136830538 136830563 -15706696 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1628 684 309 50 43 chr5 136830563 136830621 -15706638 + B4 SINE B4 230 286 -6 9 1628 284 203 33 17 chr5 136831090 136831150 -15706109 + B1F SINE Alu 67 127 -22 9 1628 650 221 33 73 chr5 136831171 136831322 -15705937 + B1_Mur1 SINE Alu 2 146 -3 9 1628 758 258 7 0 chr5 136831360 136831515 -15705744 + B3 SINE B2 4 159 -57 9 1628 451 239 8 64 chr5 136832226 136832351 -15704908 - ID_B1 SINE B4 0 224 107 9 1628 599 224 79 8 chr5 136832573 136832699 -15704560 + RSINE1 SINE B4 3 137 -28 9 1628 381 22 0 0 chr5 136832711 136832757 -15704502 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1628 808 259 25 10 chr5 136833447 136833650 -15703609 - ID_B1 SINE B4 -17 207 2 9 1628 356 294 26 68 chr5 136834174 136834291 -15702968 - PB1D10 SINE Alu -2 115 4 9 1628 215 336 27 63 chr5 136834197 136834308 -15702951 - ID_B1 SINE B4 -48 176 70 9 1628 302 315 30 61 chr5 136834340 136834472 -15702787 - ID_B1 SINE B4 -96 128 1 9 1628 636 14 0 0 chr5 136834487 136834560 -15702699 + (TC)n Simple_repeat Simple_repeat 2 74 0 9 1628 267 200 18 0 chr5 136834650 136834705 -15702554 - B4 SINE B4 -235 57 2 9 1628 287 312 116 0 chr5 136834895 136835007 -15702252 + PB1 SINE Alu 3 127 0 9 1628 688 262 89 26 chr5 136835014 136835284 -15701975 + B4A SINE B4 2 288 -4 9 1628 21 0 0 0 chr5 136835350 136835371 -15701888 + AT_rich Low_complexity Low_complexity 1 21 0 9 1628 332 260 88 130 chr5 136835372 136835564 -15701695 + B4A SINE B4 82 281 -11 9 1628 369 0 0 0 chr5 136835568 136835609 -15701650 + (GA)n Simple_repeat Simple_repeat 1 41 0 9 1628 246 32 0 0 chr5 136835773 136835804 -15701455 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1628 204 40 0 0 chr5 136835807 136835832 -15701427 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 9 1628 1003 250 13 22 chr5 136835984 136836209 -15701050 - ID_B1 SINE B4 0 224 2 9 1628 255 305 56 19 chr5 136836215 136836322 -15700937 - PB1D10 SINE Alu -2 115 5 9 1628 1041 286 41 11 chr5 136836757 136837026 -15700233 - B4 SINE B4 -12 280 4 9 1628 1200 55 7 0 chr5 136837069 136837215 -15700044 + B1_Mus2 SINE Alu 1 147 0 9 1628 559 248 191 0 chr5 136837258 136837361 -15699898 + B3A SINE B2 2 116 -82 9 1628 252 0 0 0 chr5 136837361 136837389 -15699870 + (TTAGGG)n Simple_repeat Simple_repeat 1 28 0 9 1628 559 248 191 0 chr5 136837389 136837442 -15699817 + B3A SINE B2 117 187 -11 9 1628 226 315 49 118 chr5 136837444 136837534 -15699725 + MER77 LTR ERVL 161 243 -364 9 1628 356 274 39 0 chr5 136837534 136837636 -15699623 + PB1D10 SINE Alu 1 106 -11 9 1628 226 315 49 118 chr5 136837636 136837689 -15699570 + MER77 LTR ERVL 244 293 -314 9 1628 436 68 0 0 chr5 136837792 136837851 -15699408 - B1_Mm SINE Alu 0 147 89 9 1628 1109 71 141 6 chr5 136838149 136838319 -15698940 - B2_Mm1t SINE B2 0 193 1 9 1628 284 273 39 0 chr5 136838419 136838496 -15698763 - ID SINE ID -144 80 1 9 1628 394 181 12 0 chr5 136838454 136838537 -15698722 - ZP3AR Satellite Satellite -127 85 2 9 1629 695 201 109 6 chr5 136839960 136840125 -15697134 + B3A SINE B2 1 182 -16 9 1629 583 295 128 36 chr5 136840237 136840487 -15696772 - B4A SINE B4 -19 273 1 9 1629 208 0 62 0 chr5 136840496 136840528 -15696731 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 9 1629 430 170 236 0 chr5 136840528 136840634 -15696625 - B1_Mur2 SINE Alu -11 138 8 9 1629 264 233 69 0 chr5 136840961 136841045 -15696214 - PB1D7 SINE Alu -10 110 21 9 1629 234 0 0 0 chr5 136841288 136841314 -15695945 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 9 1629 359 260 40 10 chr5 136841314 136841415 -15695844 - PB1D10 SINE Alu -12 105 2 9 1629 212 330 26 78 chr5 136841482 136841597 -15695662 + ID_B1 SINE B4 6 114 -110 9 1629 832 250 5 43 chr5 136841496 136841684 -15695575 + B3A SINE B2 14 194 -4 9 1629 642 273 14 67 chr5 136841697 136841905 -15695354 + B3A SINE B2 2 198 0 9 1629 1028 107 25 19 chr5 136841953 136842115 -15695144 - B2_Mm2 SINE B2 0 195 33 9 1629 180 0 0 0 chr5 136842291 136842311 -15694948 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1629 586 228 0 50 chr5 136842317 136842437 -15694822 - B4A SINE B4 -11 281 168 9 1629 703 142 125 8 chr5 136842569 136842697 -15694562 - B1_Mus2 SINE Alu -2 145 3 9 1629 530 162 133 0 chr5 136842741 136842846 -15694413 - B1_Mur2 SINE Alu -19 130 12 9 1629 236 264 110 68 chr5 136842743 136842861 -15694398 - B4A SINE B4 -88 204 82 9 1629 473 104 208 0 chr5 136842870 136842966 -15694293 - ID_B1 SINE B4 0 224 109 9 1629 285 345 26 55 chr5 136843209 136843324 -15693935 - B1F1 SINE Alu -7 110 7 9 1629 235 333 0 0 chr5 136843274 136843334 -15693925 - B4A SINE B4 -151 141 82 9 1629 422 282 74 30 chr5 136843359 136843494 -15693765 - RSINE1 SINE B4 -4 161 21 9 1629 819 157 104 0 chr5 136843501 136843635 -15693624 - B1_Mur1 SINE Alu 0 149 2 9 1629 571 250 19 77 chr5 136843669 136843825 -15693434 - B1_Mur1 SINE Alu -2 147 1 9 1629 649 244 18 30 chr5 136843898 136844067 -15693192 + MTC LTR MaLR 2 168 -253 9 1629 430 298 80 8 chr5 136844092 136844217 -15693042 + MTC LTR MaLR 272 405 -14 9 1629 245 191 15 60 chr5 136844342 136844407 -15692852 - PB1D10 SINE Alu -1 116 55 1 1629 726 232 51 0 chr5 136844407 136844545 -15692714 + B1_Mur1 SINE Alu 3 147 -2 1 1629 620 205 0 43 chr5 136844755 136844872 -15692387 + B4A SINE B4 158 269 -23 1 1629 462 36 0 0 chr5 136844872 136844928 -15692331 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1629 255 93 0 0 chr5 136846857 136846900 -15690359 + (A)n Simple_repeat Simple_repeat 1 43 0 1 1629 472 278 25 25 chr5 136847228 136847346 -15689913 + B1F SINE Alu 10 127 -22 1 1629 282 281 0 0 chr5 136847348 136847405 -15689854 + B1F1 SINE Alu 66 122 -27 1 1629 322 291 27 2 chr5 136847421 136847505 -15689754 + B1F SINE Alu 63 147 0 1 1629 513 0 0 0 chr5 136847567 136847624 -15689635 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1629 242 246 0 80 chr5 136848299 136848374 -15688885 - ID4_ SINE ID -14 69 1 1 1629 446 287 24 8 chr5 136848429 136848552 -15688707 - B1F SINE Alu 0 149 25 1 1629 434 302 28 28 chr5 136848552 136848572 -15688687 - ID_B1 SINE B4 0 224 82 1 1629 696 249 81 6 chr5 136849363 136849537 -15687722 - ZP3AR Satellite Satellite -2 210 24 1 1629 448 288 233 0 chr5 136850125 136850271 -15686988 - ID_B1 SINE B4 -2 222 43 1 1629 786 245 71 0 chr5 136850572 136850768 -15686491 + B4 SINE B4 65 274 -18 1 1629 291 140 0 0 chr5 136850934 136850984 -15686275 + (CAGG)n Simple_repeat Simple_repeat 2 51 0 1 1629 909 232 102 4 chr5 136851892 136852156 -15685103 - B4A SINE B4 -2 290 1 1 1629 1402 62 6 3 chr5 136853870 136854089 -15683170 - ZP3AR Satellite Satellite -93 219 1 1 1629 340 225 0 0 chr5 136854223 136854294 -15682965 + L1M4 LINE L1 2741 2811 -3335 1 1629 500 225 65 45 chr5 136854308 136854555 -15682704 + L1MD LINE L1 3070 3321 -2825 1 1629 252 0 0 0 chr5 136854564 136854592 -15682667 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1 1629 740 243 0 7 chr5 136854594 136854743 -15682516 - B1_Mur1 SINE Alu 0 149 2 1 1629 576 234 0 36 chr5 136854755 136854866 -15682393 + B1_Mur1 SINE Alu 43 149 0 1 1629 382 292 0 34 chr5 136854902 136855019 -15682240 + PB1D9 SINE Alu 1 113 -7 1 1629 813 251 97 83 chr5 136855034 136855312 -15681947 + B4 SINE B4 11 292 0 1 1629 1272 84 61 6 chr5 136855387 136855567 -15681692 - B2_Mm2 SINE B2 -4 191 2 1 1629 502 328 36 40 chr5 136855632 136855880 -15681379 + Lx8 LINE L1 7175 7421 -52 1 1629 847 248 44 174 chr5 136856263 136856467 -15680792 + B4 SINE B4 33 217 -75 1 1629 486 0 0 0 chr5 136856467 136856521 -15680738 + (CAAG)n Simple_repeat Simple_repeat 3 56 0 1 1629 847 248 44 174 chr5 136856521 136856614 -15680645 + B4 SINE B4 218 291 -1 1 1629 211 279 98 0 chr5 136856650 136856711 -15680548 + ID4_ SINE ID 8 74 -9 1 1629 227 229 213 0 chr5 136856821 136856882 -15680377 - ID4_ SINE ID -5 78 5 1 1629 294 289 124 0 chr5 136856899 136856996 -15680263 - PB1D10 SINE Alu -8 109 1 1 1629 803 251 74 6 chr5 136857134 136857310 -15679949 + ID_B1 SINE B4 14 201 -23 1 1629 261 0 0 0 chr5 136857592 136857621 -15679638 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1629 812 250 69 0 chr5 136858687 136858891 -15678368 + ID_B1 SINE B4 4 221 -3 1 1629 570 227 129 5 chr5 136859611 136859797 -15677462 + ID_B1 SINE B4 4 212 -12 1 1629 360 0 0 0 chr5 136859803 136859843 -15677416 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1629 1555 179 148 3 chr5 136860050 136860381 -15676878 + MTEb LTR MaLR 1 379 0 1 1629 598 147 0 21 chr5 136860719 136860816 -15676443 - MTC LTR MaLR -323 98 4 1 1629 182 280 129 80 chr5 136861093 136861256 -15676003 - MIRm SINE MIR -3 273 103 1 1629 480 287 36 22 chr5 136861484 136861623 -15675636 + ID_B1 SINE B4 82 222 -2 1 1629 556 266 48 16 chr5 136861650 136861776 -15675483 + RSINE1 SINE B4 36 165 0 1 1629 412 250 27 27 chr5 136861875 136861986 -15675273 + PB1D10 SINE Alu 2 112 -5 1 1629 1960 147 52 49 chr5 136862201 136862588 -15674671 + MTB_Mm LTR MaLR 20 407 0 1 1629 455 231 92 17 chr5 136862614 136862733 -15674526 - B3A SINE B2 -48 150 23 1 1629 244 346 58 19 chr5 136862736 136862839 -15674420 - PB1D7 SINE Alu -13 107 1 1 1629 330 230 148 11 chr5 136862753 136862841 -15674418 - ID_B1 SINE B4 -45 179 80 1 1629 21 0 0 0 chr5 136862856 136862877 -15674382 + AT_rich Low_complexity Low_complexity 1 21 0 1 1629 562 174 43 68 chr5 136863258 136863375 -15673884 - ID_B1 SINE B4 -7 217 104 1 1629 212 312 0 83 chr5 136863427 136863511 -15673748 - L2c LINE L2 -3 3384 3308 1 1629 687 247 218 6 chr5 136863747 136863942 -15673317 + ID_B1 SINE B4 11 243 -49 1 1629 302 262 119 0 chr5 136863942 136864026 -15673233 + PB1D7 SINE Alu 1 94 -26 1 1629 950 258 9 5 chr5 136865024 136865238 -15672021 - ID_B1 SINE B4 -9 215 1 1 1629 1056 149 109 0 chr5 136865291 136865492 -15671767 - URR1A DNA MER1_type -3 223 1 1 1629 339 232 121 107 chr5 136865499 136865639 -15671620 + B1F1 SINE Alu 1 142 -7 1 1629 324 261 158 23 chr5 136865642 136865775 -15671484 + RSINE1 SINE B4 3 153 -12 1 1629 1136 72 0 0 chr5 136865951 136866090 -15671169 + B1_Mus2 SINE Alu 1 139 -8 1 1629 266 0 29 0 chr5 136866090 136866124 -15671135 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1629 1344 197 146 11 chr5 136866591 136866960 -15670299 + MTD LTR MaLR 1 419 0 1 1629 212 220 29 21 chr5 136867165 136867260 -15669999 - MIRc SINE MIR -110 166 57 1 1629 436 226 26 70 chr5 136868331 136868445 -15668814 - B1F1 SINE Alu 0 149 41 1 1629 437 276 10 0 chr5 136869420 136869518 -15667741 - ID_B1 SINE B4 -16 208 110 1 1629 250 358 81 0 chr5 136869518 136869543 -15667716 - B1F1 SINE Alu -16 133 1 1 1629 547 147 128 0 chr5 136869789 136869891 -15667368 + B1_Mur3 SINE Alu 33 147 -2 1 1629 423 0 0 0 chr5 136869912 136869959 -15667300 + (CCAA)n Simple_repeat Simple_repeat 2 48 0 1 1629 903 261 77 40 chr5 136870084 136870356 -15666903 + B4 SINE B4 10 291 -1 1 1629 285 29 0 0 chr5 136870736 136870770 -15666489 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1629 565 296 118 20 chr5 136871115 136871318 -15665941 - ID_B1 SINE B4 0 224 2 1 1629 684 269 55 5 chr5 136872796 136872998 -15664261 - ID_B1 SINE B4 -8 216 5 1 1629 451 259 34 8 chr5 136873271 136873388 -15663871 + ID_B1 SINE B4 84 203 -21 1 1629 1039 43 48 18 chr5 136873438 136873605 -15663654 + (TTTCC)n Simple_repeat Simple_repeat 1 172 0 1 1629 652 260 0 0 chr5 136873619 136873746 -15663513 - RSINE1 SINE B4 -36 129 3 1 1629 192 158 0 0 chr5 136874102 136874140 -15663119 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 1 1629 627 265 46 93 chr5 136874290 136874506 -15662753 + ID_B1 SINE B4 19 224 0 1 1629 694 171 31 0 chr5 136874385 136874514 -15662745 + B1_Mur3 SINE Alu 17 149 0 1 1629 3665 223 122 26 chr5 136874541 136875509 -15661750 + Lx8 LINE L1 6226 7286 -187 1 1629 238 180 185 62 chr5 136875641 136875706 -15661553 - ID4_ SINE ID -10 73 1 1 1629 1601 39 6 0 chr5 136875706 136876027 -15661232 - ZP3AR Satellite Satellite -11 322 1 1 1629 3041 42 11 3 chr5 136876204 136876586 -15660673 + MTA_Mm LTR MaLR 1 385 -11 1 1629 28 48 0 0 chr5 136876640 136876682 -15660577 + AT_rich Low_complexity Low_complexity 1 42 0 1 1629 444 309 40 0 chr5 136876800 136876926 -15660333 - ID_B1 SINE B4 -13 211 81 1 1629 193 246 0 32 chr5 136876969 136877032 -15660227 - MIR SINE MIR -61 147 87 1 1629 204 200 20 0 chr5 136877179 136877212 -15660047 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 1 1629 216 86 0 0 chr5 136877212 136877247 -15660012 + (CCTG)n Simple_repeat Simple_repeat 2 36 0 1 1629 204 200 20 0 chr5 136877247 136877263 -15659996 + (TCCA)n Simple_repeat Simple_repeat 3 19 0 1 1629 1371 232 148 3 chr5 136877281 136877639 -15659620 + MTD LTR MaLR 10 419 0 1 1629 272 278 48 18 chr5 136877788 136877953 -15659306 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 1 1629 402 224 44 56 chr5 136877936 136878178 -15659081 + (TCCA)n Simple_repeat Simple_repeat 1 239 0 1 1629 222 200 96 39 chr5 136878190 136878242 -15659017 - L2a LINE L2 -18 3408 3354 1 1629 1168 56 0 7 chr5 136878426 136878569 -15658690 + B1_Mus2 SINE Alu 1 142 -5 1 1629 421 171 43 95 chr5 136880129 136880245 -15657014 + MT2B LTR ERVL 155 264 -337 1 1629 901 63 71 0 chr5 136880146 136880272 -15656987 + B1_Mus1 SINE Alu 6 140 -8 1 1629 581 216 9 0 chr5 136880293 136880404 -15656855 - ID_B1 SINE B4 -8 216 105 1 1629 38 22 0 0 chr5 136880473 136880518 -15656741 + AT_rich Low_complexity Low_complexity 1 45 0 1 1629 299 309 41 10 chr5 136880546 136880644 -15656615 - B1F1 SINE Alu -4 145 45 1 1629 412 243 375 0 chr5 136880889 136881041 -15656218 + ID_B1 SINE B4 2 210 -14 1 1629 204 40 0 0 chr5 136881041 136881066 -15656193 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1 1629 255 250 14 0 chr5 136881372 136881444 -15655815 - ID4 SINE ID -9 74 2 1 1629 284 270 0 0 chr5 136881445 136881508 -15655751 - ZP3AR Satellite Satellite -108 104 42 1 1629 368 228 218 17 chr5 136881601 136881775 -15655484 - B3 SINE B2 -6 210 2 1 1629 325 278 55 32 chr5 136881916 136882071 -15655188 - L1M5 LINE L1 -2400 3746 3589 1 1629 309 257 79 73 chr5 136882734 136882898 -15654361 + L1M2 LINE L1 3126 3290 -2853 1 1629 620 228 0 16 chr5 136882929 136883054 -15654205 + B3 SINE B2 2 124 -92 1 1629 356 241 32 89 chr5 136883073 136883196 -15654063 - PB1D10 SINE Alu -1 116 1 1 1629 859 193 45 26 chr5 136883603 136883802 -15653457 + MTEb LTR MaLR 208 419 0 1 1629 942 220 115 8 chr5 136884051 136884312 -15652947 - B4A SINE B4 -2 290 2 1 1629 829 318 99 56 chr5 136884508 136884901 -15652358 + MLT1D LTR MaLR 48 457 -48 1 1629 391 218 37 49 chr5 136885038 136885120 -15652139 - B1F SINE Alu 0 149 69 1 1629 436 200 176 0 chr5 136885048 136885133 -15652126 - ID_B1 SINE B4 -6 218 119 1 1629 473 84 0 24 chr5 136885741 136885826 -15651433 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 1 1629 305 232 48 24 chr5 136885840 136885924 -15651335 + B3 SINE B2 125 210 -6 1 1629 361 291 0 91 chr5 136886024 136886145 -15651114 + PB1D10 SINE Alu 1 110 -7 1 1629 557 208 222 19 chr5 136886436 136886596 -15650663 - ID_B1 SINE B4 -47 245 47 1 1629 422 289 210 8 chr5 136887270 136887502 -15649757 + B4A SINE B4 3 281 -11 1 1629 907 240 34 5 chr5 136887698 136887907 -15649352 + B3 SINE B2 2 216 0 1 1629 661 295 33 65 chr5 136888233 136888447 -15648812 + B4 SINE B4 86 292 0 1 1629 394 293 87 0 chr5 136888484 136888634 -15648625 + RSINE1 SINE B4 3 165 0 1 1629 349 307 15 45 chr5 136888699 136888832 -15648427 + B4 SINE B4 70 198 -94 1 1629 635 153 9 35 chr5 136888719 136888834 -15648425 + B1_Mur4 SINE Alu 5 116 -34 1 1629 700 242 30 0 chr5 136888833 136888998 -15648261 - B3 SINE B2 -18 198 29 1 1629 200 146 60 40 chr5 136889456 136889506 -15647753 + MIR SINE MIR 153 203 -59 1 1629 310 284 0 40 chr5 136889810 136889909 -15647350 + PB1D7 SINE Alu 18 112 -8 1 1629 218 135 0 51 chr5 136889909 136889948 -15647311 + G-rich Low_complexity Low_complexity 4 40 0 1 1629 309 331 25 68 chr5 136889948 136890033 -15647226 + HAL1-3A_ME LINE L1 2285 2359 -499 1 1629 623 257 82 24 chr5 136890033 136890240 -15647019 + ID_B1 SINE B4 5 223 -1 1 1629 309 331 25 68 chr5 136890240 136890316 -15646943 + HAL1-3A_ME LINE L1 2360 2439 -419 1 1629 412 282 64 51 chr5 136890785 136890931 -15646328 + ID_B1 SINE B4 64 212 -12 1 1629 1359 86 27 0 chr5 136890931 136891118 -15646141 + B2_Mm1t SINE B2 2 193 0 1 1629 351 113 0 0 chr5 136891164 136891217 -15646042 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 1 1629 201 89 43 22 chr5 136891458 136891504 -15645755 + CT-rich Low_complexity Low_complexity 3 49 0 1 1629 324 293 81 0 chr5 136891514 136891613 -15645646 - PB1D10 SINE Alu -1 116 10 1 1629 1047 265 16 24 chr5 136891818 136892069 -15645190 - B4A SINE B4 -43 249 1 1 1629 979 130 172 11 chr5 136893070 136893256 -15644003 + URR1B DNA MER1_type 7 222 -3 1 1629 233 305 242 0 chr5 136893254 136893382 -15643877 + Charlie1 DNA MER1_type 1 159 -2622 1 1629 315 330 44 9 chr5 136893470 136893583 -15643676 - ID_B1 SINE B4 -4 220 104 1 1629 244 271 34 0 chr5 136893574 136893633 -15643626 - ID2 SINE ID -14 69 9 1 1629 300 321 26 35 chr5 136893836 136893952 -15643307 - B4 SINE B4 -4 288 174 1 1629 342 312 77 77 chr5 136894449 136894682 -15642577 + L1ME4a LINE L1 5602 5834 -290 1 1629 616 282 43 0 chr5 136894721 136894884 -15642375 - ID_B1 SINE B4 -21 203 34 1 1629 295 309 120 9 chr5 136894982 136895090 -15642169 + B1F2 SINE Alu 2 121 -28 1 1629 379 287 94 17 chr5 136894998 136895115 -15642144 + ID_B1 SINE B4 99 224 0 1 1629 836 231 47 31 chr5 136895168 136895190 -15642069 - B3A SINE B2 -3 195 178 1 1629 1311 180 155 18 chr5 136895190 136895519 -15641740 - ORR1D1 LTR MaLR 0 374 1 1 1629 836 231 47 31 chr5 136895519 136895688 -15641571 - B3A SINE B2 -21 177 1 1 1629 348 127 0 0 chr5 136896121 136896176 -15641083 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1629 252 0 0 0 chr5 136896311 136896339 -15640920 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1629 258 330 90 18 chr5 136897138 136897249 -15640010 - MER2 DNA MER2_type -1 344 226 1 1629 605 310 66 5 chr5 136897388 136897586 -15639673 - MER2 DNA MER2_type -134 211 2 1 1629 281 250 82 10 chr5 136897666 136897763 -15639496 + PB1D10 SINE Alu 5 108 -9 1 1629 208 135 0 0 chr5 136897780 136897817 -15639442 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 1 1629 567 245 114 25 chr5 136898471 136898672 -15638587 + ID_B1 SINE B4 5 223 -1 1 1629 401 205 72 0 chr5 136899125 136899208 -15638051 + PB1D7 SINE Alu 7 95 -25 1 1629 878 241 33 28 chr5 136899307 136899520 -15637739 + ID_B1 SINE B4 8 221 -3 1 1629 598 300 95 0 chr5 136899716 136899916 -15637343 + ID_B1 SINE B4 1 219 -5 1 1629 521 263 8 33 chr5 136899916 136900038 -15637221 + RSINE1 SINE B4 2 120 -45 1 1629 351 235 22 56 chr5 136900042 136900132 -15637127 - B4A SINE B4 -205 87 1 1 1629 389 276 446 33 chr5 136900295 136900485 -15636774 + B4 SINE B4 25 292 0 1 1629 306 0 0 0 chr5 136900505 136900539 -15636720 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1629 452 264 0 8 chr5 136900759 136900866 -15636393 + MER58B DNA MER1_type 4 102 -284 1 1629 473 196 11 0 chr5 136900867 136900959 -15636300 + MER58D DNA MER1_type 284 376 -10 1 1629 444 250 0 25 chr5 136900961 136901080 -15636179 + PB1D10 SINE Alu 2 117 0 1 1629 398 263 21 21 chr5 136902390 136902487 -15634772 - B4 SINE B4 -72 220 124 1 1629 207 100 0 0 chr5 136902487 136902517 -15634742 + (TCC)n Simple_repeat Simple_repeat 2 31 0 1 1629 451 226 38 0 chr5 136902754 136902860 -15634399 - PB1D10 SINE Alu -5 112 3 1 1629 268 206 265 0 chr5 136903517 136903585 -15633674 + B1F1 SINE Alu 12 97 -52 1 1629 311 250 0 0 chr5 136903591 136903667 -15633592 + ID4 SINE ID 4 79 -4 1 1629 798 81 0 0 chr5 136905441 136905565 -15631694 + (TG)n Simple_repeat Simple_repeat 2 125 0 1 1629 182 277 77 0 chr5 136906098 136906163 -15631096 - MIRc SINE MIR -117 151 82 1 1629 1033 247 33 16 chr5 136906235 136906478 -15630781 + B4 SINE B4 2 248 -44 1 1629 403 306 196 5 chr5 136906555 136906739 -15630520 - MER2B DNA MER2_type -66 270 52 1 1629 300 264 33 33 chr5 136906705 136906795 -15630464 + RMER12 LTR ERVK 745 834 -488 1 1629 261 116 23 0 chr5 136906857 136906900 -15630359 - L1ME4a LINE L1 -105 6019 5976 1 1629 863 252 64 5 chr5 136907227 136907442 -15629817 + B4A SINE B4 3 230 -62 1 1629 741 264 0 7 chr5 136907442 136907591 -15629668 + RSINE1 SINE B4 3 150 -15 1 1629 264 255 50 50 chr5 136908177 136908276 -15628983 - B3 SINE B2 -5 211 113 1 1629 544 295 46 114 chr5 136908203 136908509 -15628750 - B4A SINE B4 0 292 8 1 1629 504 48 0 0 chr5 136908527 136908590 -15628669 + (TTTTC)n Simple_repeat Simple_repeat 3 65 0 1 1629 206 128 26 0 chr5 136908590 136908629 -15628630 + CT-rich Low_complexity Low_complexity 2 41 0 1 1629 407 269 11 11 chr5 136908723 136908817 -15628442 - ID_B1 SINE B4 -130 94 1 1 1629 581 259 103 46 chr5 136909741 136909935 -15627324 - ID_B1 SINE B4 -17 207 3 1 1629 188 301 118 31 chr5 136910010 136910137 -15627122 - MIRb SINE MIR -73 195 58 1 1629 21 0 0 0 chr5 136910835 136910856 -15626403 + AT_rich Low_complexity Low_complexity 1 21 0 1 1629 809 286 19 14 chr5 136911218 136911427 -15625832 - B4A SINE B4 0 292 83 1 1629 281 144 92 46 chr5 136911482 136911569 -15625690 - Lx9 LINE L1 -8 7636 7546 1 1629 359 188 0 0 chr5 136911586 136911650 -15625609 - Lx9 LINE L1 -181 7463 7400 1 1629 414 193 24 0 chr5 136911654 136911737 -15625522 - B4A SINE B4 -207 85 1 1 1629 298 296 0 101 chr5 136912157 136912266 -15624993 - B1F2 SINE Alu -40 109 12 1 1629 257 344 83 94 chr5 136912278 136912628 -15624631 + ORR1E LTR MaLR 1 346 -13 1 1629 537 209 9 0 chr5 136912737 136912842 -15624417 + ZP3AR Satellite Satellite 44 149 -63 1 1629 333 303 147 0 chr5 136913326 136913435 -15623824 + ID_B1 SINE B4 84 208 -16 1 1629 396 0 0 0 chr5 136913775 136913819 -15623440 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1629 447 243 156 5 chr5 136913827 136913959 -15623300 - B3A SINE B2 -44 172 3 1 1629 709 272 45 20 chr5 136914065 136914264 -15622995 + B4A SINE B4 3 206 -86 1 1629 278 312 15 45 chr5 136914570 136914704 -15622555 - YREP_Mm Unknown Unknown -1501 311 182 1 1629 722 192 0 0 chr5 136914584 136914709 -15622550 + ID_B1 SINE B4 100 224 0 1 1629 183 94 0 0 chr5 136914771 136914780 -15622479 + (A)n Simple_repeat Simple_repeat 1 9 0 1 1629 6135 99 21 12 chr5 136914780 136915666 -15621593 + Lx LINE L1 5761 6654 0 1 1629 183 94 0 0 chr5 136915666 136915688 -15621571 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1629 475 252 8 40 chr5 136915965 136916089 -15621170 - PB1D7 SINE Alu 0 120 1 1 1629 436 209 0 11 chr5 136916960 136917047 -15620212 + ZP3AR Satellite Satellite 40 125 -87 1 1629 612 73 0 0 chr5 136917853 136917935 -15619324 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 1 1629 837 100 68 23 chr5 136917935 136918068 -15619191 - B1_Mur3 SINE Alu 0 149 11 1 1629 875 260 76 25 chr5 136919077 136919353 -15617906 + B4A SINE B4 3 292 0 1 1629 1218 83 0 0 chr5 136919387 136919555 -15617704 + (GAGAA)n Simple_repeat Simple_repeat 4 171 0 1 1629 655 271 50 6 chr5 136920110 136920292 -15616967 - ID_B1 SINE B4 -8 216 27 1 1629 304 246 27 55 chr5 136920522 136920595 -15616664 - ID4_ SINE ID -12 71 1 1 1629 1515 52 0 3 chr5 136920596 136920809 -15616450 - ZP3AR Satellite Satellite -12 212 1 1 1629 203 325 74 12 chr5 136920902 136920983 -15616276 - MIR3 SINE MIR -32 176 91 1 1629 1002 208 31 0 chr5 136921536 136921728 -15615531 - ID_B1 SINE B4 -1 223 26 1 1629 561 301 22 22 chr5 136923778 136923914 -15613345 + RSINE1 SINE B4 12 147 -18 1 1629 983 264 5 10 chr5 136924166 136924373 -15612886 + B4 SINE B4 2 207 -85 1 1629 312 259 17 0 chr5 136924446 136924504 -15612755 + ID SINE ID 1 59 -165 1 1629 324 315 0 0 chr5 136925037 136925110 -15612149 - ID4_ SINE ID -10 73 1 1 1629 242 230 191 48 chr5 136925249 136925354 -15611905 - MIR SINE MIR -139 123 4 1 1629 682 249 31 109 chr5 136925628 136925885 -15611374 - ORR1E LTR MaLR -122 237 1 1 1629 28 0 0 0 chr5 136926015 136926043 -15611216 + AT_rich Low_complexity Low_complexity 1 28 0 1 1629 765 277 57 19 chr5 136926269 136926479 -15610780 + ID_B1 SINE B4 5 222 -2 1 1629 883 256 141 19 chr5 136926502 136926608 -15610651 - Lx8 LINE L1 -2 7471 7336 1 1629 540 56 0 0 chr5 136926608 136926680 -15610579 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1629 883 256 141 19 chr5 136926680 136926892 -15610367 - Lx8 LINE L1 -138 7335 7114 1 1629 448 181 53 159 chr5 136926907 136927058 -15610201 - B1_Mur1 SINE Alu 0 149 15 1 1629 347 336 106 8 chr5 136927322 136927454 -15609805 - B4A SINE B4 -6 286 142 1 1629 284 256 13 13 chr5 136927485 136927564 -15609695 - B4A SINE B4 -213 79 1 1 1629 2631 44 3 0 chr5 136927621 136927940 -15609319 - L1Md_F2 LINE L1 -1 6581 6262 1 1629 741 178 22 7 chr5 136928407 136928543 -15608716 + B3 SINE B2 1 138 -78 1 1629 295 222 201 25 chr5 136929126 136929236 -15608023 + B1F1 SINE Alu 7 126 -21 1 1629 207 0 0 0 chr5 136930121 136930144 -15607115 + (TA)n Simple_repeat Simple_repeat 1 23 0 1 1629 235 301 121 0 chr5 136930287 136930370 -15606889 + PB1 SINE Alu 33 125 -2 1 1629 334 250 14 14 chr5 136930407 136930480 -15606779 + ID4_ SINE ID 4 76 -7 1 1629 1123 50 0 0 chr5 136930886 136931027 -15606232 - B1_Mus2 SINE Alu 0 147 7 1 1629 501 234 218 26 chr5 136931204 136931262 -15605997 + B4 SINE B4 5 63 -229 1 1629 279 0 0 0 chr5 136931262 136931293 -15605966 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1629 501 234 218 26 chr5 136931293 136931418 -15605841 + B4 SINE B4 64 225 -67 1 1629 219 250 188 0 chr5 136931418 136931482 -15605777 + B4 SINE B4 2 77 -215 1 1629 237 33 0 0 chr5 136931572 136931602 -15605657 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1629 412 239 11 0 chr5 136931769 136931857 -15605402 - PB1D10 SINE Alu -10 107 19 1 1629 330 222 12 58 chr5 136932658 136932744 -15604515 - ID4_ SINE ID 0 83 2 1 1629 329 286 0 0 chr5 136932745 136932815 -15604444 - ZP3AR Satellite Satellite -116 96 27 1 1629 193 234 21 0 chr5 136932988 136933035 -15604224 + MIR SINE MIR 112 159 -103 1 1629 1483 67 11 49 chr5 136933072 136933398 -15603861 + ZP3AR Satellite Satellite 1 313 0 1 1629 198 91 0 0 chr5 136933624 136933657 -15603602 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 1 1629 487 322 112 46 chr5 136933684 136933925 -15603334 - B4A SINE B4 -35 257 1 1 1629 192 167 0 67 chr5 136935062 136935107 -15602152 - MER5B DNA MER1_type -104 74 33 1 1629 248 344 73 79 chr5 136935125 136935289 -15601970 + MER58A DNA MER1_type 13 175 -49 1 1629 493 136 30 32 chr5 136935789 136935888 -15601371 - PB1D9 SINE Alu -3 124 24 1 1629 371 153 14 0 chr5 136936017 136936089 -15601170 - ID SINE ID -150 74 2 1 1629 322 260 49 53 chr5 136936184 136936300 -15600959 + B3A SINE B2 82 194 -22 1 1629 760 261 16 11 chr5 136936309 136936495 -15600764 - ID_B1 SINE B4 -13 211 25 1 1629 487 225 98 23 chr5 136936810 136937014 -15600245 + B4 SINE B4 20 278 -14 1 1629 211 289 122 82 chr5 136937223 136937321 -15599938 - B4 SINE B4 -188 104 3 1 1629 382 288 162 21 chr5 136937335 136937477 -15599782 - MER5C1 DNA MER1_type -45 218 57 1 1629 856 287 75 22 chr5 136937796 136938063 -15599196 + B4A SINE B4 1 281 -11 1 1629 516 295 151 0 chr5 136938120 136938286 -15598973 - ID_B1 SINE B4 -32 192 2 1 1629 423 278 9 36 chr5 136939100 136939212 -15598047 + PB1D7 SINE Alu 12 120 0 1 1629 615 236 217 0 chr5 136939241 136939398 -15597861 + ID_B1 SINE B4 27 217 -7 1 1629 449 228 0 89 chr5 136940646 136940747 -15596512 - ZP3AR Satellite Satellite -116 96 5 1 1629 218 353 29 10 chr5 136940762 136940865 -15596394 - PB1D9 SINE Alu -5 115 11 1 1629 566 288 0 64 chr5 136940888 136941029 -15596230 + ID_B1 SINE B4 87 218 -6 1 1629 195 42 0 0 chr5 136941936 136941960 -15595299 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1629 506 289 6 57 chr5 136942499 136942657 -15594602 + RSINE1 SINE B4 3 152 -13 1 1629 533 80 0 11 chr5 136942659 136942748 -15594511 + (CA)n Simple_repeat Simple_repeat 2 89 0 1 1629 26 30 0 0 chr5 136942758 136942791 -15594468 + AT_rich Low_complexity Low_complexity 1 33 0 1 1629 453 258 203 27 chr5 136942828 136943015 -15594244 + B4A SINE B4 1 220 -72 1 1629 186 174 0 0 chr5 136943070 136943116 -15594143 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 1 1629 186 174 0 0 chr5 136943179 136943225 -15594034 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 1 1629 186 174 0 0 chr5 136943288 136943334 -15593925 + (CAGA)n Simple_repeat Simple_repeat 1 46 0 1 1629 194 288 25 76 chr5 136943827 136943906 -15593353 + MIRc SINE MIR 60 134 -134 1 1629 486 335 0 7 chr5 136944571 136944721 -15592538 + RSINE1 SINE B4 4 152 -13 1 1629 249 33 0 0 chr5 136944784 136944814 -15592445 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1629 328 273 0 0 chr5 136944815 136944892 -15592367 + PB1D10 SINE Alu 21 97 -20 1 1629 376 273 0 11 chr5 136944898 136944987 -15592272 - ZP3AR Satellite Satellite -83 129 42 1 1629 299 176 162 0 chr5 136945754 136945828 -15591431 + PB1D10 SINE Alu 32 117 0 1 1629 298 296 178 7 chr5 136945830 136945892 -15591367 + B4A SINE B4 2 88 -204 1 1629 283 323 11 21 chr5 136945892 136945987 -15591272 + B1F2 SINE Alu 1 94 -55 1 1629 418 237 50 42 chr5 136946111 136946230 -15591029 + ID_B1 SINE B4 105 224 0 1 1629 230 211 0 0 chr5 136946184 136946236 -15591023 + FAM SINE Alu 262 313 -2 1 1629 405 284 73 0 chr5 136946483 136946592 -15590667 - PB1D10 SINE Alu 0 117 1 1 1629 534 263 60 0 chr5 136946972 136947105 -15590154 - ZP3AR Satellite Satellite -26 186 46 1 1629 187 103 0 49 chr5 136947106 136947147 -15590112 + GA-rich Low_complexity Low_complexity 3 41 0 1 1629 313 280 154 39 chr5 136947153 136947309 -15589950 + HAL1-3A_ME LINE L1 2285 2458 -400 1 1629 352 224 39 13 chr5 136947381 136947458 -15589801 + B1F2 SINE Alu 1 79 -70 1 1629 421 323 0 0 chr5 136947392 136947488 -15589771 + ID_B1 SINE B4 92 187 -37 1 1629 303 340 95 27 chr5 136947496 136947644 -15589615 + HAL1-3A_ME LINE L1 2284 2441 -417 1 1629 411 273 107 7 chr5 136948488 136948628 -15588631 + RSINE1 SINE B4 1 154 -11 1 1629 290 189 10 40 chr5 136949101 136949200 -15588059 + GA-rich Low_complexity Low_complexity 3 98 0 1 1629 704 236 96 14 chr5 136949443 136949589 -15587670 + RSINE1 SINE B4 8 165 0 1 1629 328 311 28 69 chr5 136949948 136950093 -15587166 - LFSINE_Vert SINE SINE -243 216 78 1 1629 313 250 76 43 chr5 136950471 136950563 -15586696 + PB1D10 SINE Alu 1 95 -22 1 1629 309 269 83 37 chr5 136950563 136950577 -15586682 + ID_B1 SINE B4 82 192 -32 1 1629 270 290 0 42 chr5 136951220 136951292 -15585967 + PB1 SINE Alu 1 69 -58 1 1629 561 256 126 11 chr5 136951273 136951447 -15585812 + ID_B1 SINE B4 24 217 -7 1 1629 318 125 42 99 chr5 136951388 136951459 -15585800 + B1F1 SINE Alu 82 148 -1 1 1629 729 201 37 0 chr5 136952559 136952693 -15584566 + ID_B1 SINE B4 86 224 0 1 1629 238 298 20 60 chr5 136953032 136953132 -15584127 - MIR SINE MIR -94 114 19 1 1629 483 266 0 11 chr5 136953299 136953394 -15583865 + PB1D10 SINE Alu 16 109 -8 1 1629 534 287 0 0 chr5 136953424 136953553 -15583706 + ZP3AR Satellite Satellite 12 140 -72 1 1629 253 302 42 0 chr5 136953508 136953590 -15583669 + ID4_ SINE ID 1 90 -62 1 1629 357 242 39 137 chr5 136954356 136954509 -15582750 - PB1D10 SINE Alu 0 149 12 1 1629 198 103 0 0 chr5 136955579 136955608 -15581651 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1629 372 234 13 25 chr5 136955664 136955743 -15581516 + B4A SINE B4 20 97 -195 1 1629 703 133 115 0 chr5 136956121 136956234 -15581025 + B1_Mus1 SINE Alu 9 134 -14 1 1629 429 20 0 0 chr5 136956301 136956351 -15580908 + (TC)n Simple_repeat Simple_repeat 1 50 0 1 1629 534 31 0 0 chr5 136956351 136956414 -15580845 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1629 1240 34 0 7 chr5 136956723 136956870 -15580389 + B1_Mus1 SINE Alu 3 148 0 1 1629 306 255 30 60 chr5 136956922 136957022 -15580237 - B1F SINE Alu -18 99 3 1 1629 576 305 8 0 chr5 136957300 136957428 -15579831 + ID_B1 SINE B4 82 210 -14 1 1629 478 295 49 28 chr5 136957428 136957443 -15579816 + B1F SINE Alu 1 146 -3 1 1629 520 246 124 16 chr5 136957444 136957630 -15579629 + ID_B1 SINE B4 4 209 -15 1 1629 609 275 78 88 chr5 136957645 136957940 -15579319 + B4 SINE B4 1 292 0 1 1629 242 185 36 18 chr5 136958211 136958266 -15578993 + ID4 SINE ID 18 73 -10 1 1629 237 108 0 0 chr5 136958332 136958369 -15578890 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 1 1629 239 235 185 0 chr5 136958839 136958920 -15578339 - BC1_Mm scRNA scRNA -56 96 1 1 1629 457 322 28 7 chr5 136958979 136959123 -15578136 - B1F SINE Alu -2 147 1 1 1629 486 0 0 0 chr5 136959207 136959261 -15577998 + (TG)n Simple_repeat Simple_repeat 1 54 0 1 1629 1181 202 10 0 chr5 136959426 136959634 -15577625 + B3 SINE B2 1 210 -6 1 1629 744 278 40 25 chr5 136959725 136959924 -15577335 + ID_B1 SINE B4 8 209 -15 1 1629 538 284 37 0 chr5 136960589 136960723 -15576536 + ID_B1 SINE B4 7 145 -79 1 1629 682 218 180 5 chr5 136960718 136960907 -15576352 + MTEa LTR MaLR 156 377 -2 1 1629 1166 61 0 26 chr5 136960940 136961091 -15576168 + B1_Mus1 SINE Alu 2 148 0 1 1629 233 227 0 0 chr5 136962151 136962195 -15575064 - L2a LINE L2 -5 3421 3378 1 1629 793 259 73 34 chr5 136962750 136962954 -15574305 - ID_B1 SINE B4 -12 212 1 1 1629 223 222 74 0 chr5 136963230 136963284 -15573975 - ID SINE ID -166 58 1 1 1629 207 100 0 0 chr5 136963900 136963930 -15573329 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1629 616 198 9 0 chr5 136964139 136964245 -15573014 + ID_B1 SINE B4 86 192 -32 1 1629 527 345 126 17 chr5 136964285 136964524 -15572735 + B4 SINE B4 18 282 -10 1 1629 288 0 0 0 chr5 136965011 136965043 -15572216 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1629 954 286 18 29 chr5 136965052 136965329 -15571930 - B4A SINE B4 -18 274 1 1 1629 522 257 9 0 chr5 136965986 136966099 -15571160 + PB1 SINE Alu 3 116 -11 1 1629 913 219 30 0 chr5 136966099 136966284 -15570975 + ZP3AR Satellite Satellite 1 190 -3 1 1629 230 261 73 42 chr5 136966972 136967068 -15570191 + RLTR21 LTR ERVK 1305 1403 -169 1 1629 385 230 30 0 chr5 136967117 136967217 -15570042 + PB1D10 SINE Alu 1 103 -14 1 1629 1005 92 0 0 chr5 136967217 136967359 -15569900 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 1 1629 714 266 25 25 chr5 136967401 136967563 -15569696 + RSINE1 SINE B4 4 165 0 1 1629 204 162 0 51 chr5 136967888 136967927 -15569332 + G-rich Low_complexity Low_complexity 4 40 0 1 1629 422 270 53 26 chr5 136967927 136968041 -15569218 - RSINE1 SINE B4 -46 119 3 1 1629 782 279 70 0 chr5 136968320 136968544 -15568715 + ZP3AR Satellite Satellite 1 239 -1 1 1629 288 253 12 37 chr5 136968544 136968626 -15568633 + ID4_ SINE ID 1 80 -3 1 1629 297 0 0 0 chr5 136968629 136968662 -15568597 + (TGGA)n Simple_repeat Simple_repeat 4 36 0 1 1629 191 302 0 0 chr5 136968750 136968803 -15568456 + MIRb SINE MIR 182 234 -34 1 1629 432 0 0 0 chr5 136969389 136969437 -15567822 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1629 224 185 55 18 chr5 136969793 136969848 -15567411 + B1_Mur4 SINE Alu 89 145 -5 1 1629 614 250 49 78 chr5 136969859 136970063 -15567196 + B3A SINE B2 1 198 0 1 1630 252 264 286 8 chr5 136970399 136970525 -15566734 + RSINE1 SINE B4 3 163 -2 1 1630 765 290 97 13 chr5 136970868 136971095 -15566164 + MTE2a LTR MaLR 1 246 -133 1 1630 621 313 12 0 chr5 136971980 136972146 -15565113 + ID_B1 SINE B4 8 175 -49 1 1630 180 0 0 0 chr5 136972159 136972179 -15565080 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1630 455 275 0 9 chr5 136972189 136972299 -15564960 + RSINE1 SINE B4 3 111 -54 1 1630 973 243 48 10 chr5 136972531 136972739 -15564520 + ID_B1 SINE B4 2 217 -7 1 1630 278 321 119 0 chr5 136972910 136972994 -15564265 + ID_B1 SINE B4 24 117 -107 1 1630 372 22 0 0 chr5 136973484 136973529 -15563730 + (TC)n Simple_repeat Simple_repeat 2 46 0 1 1630 216 0 0 0 chr5 136973529 136973553 -15563706 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1630 983 236 25 109 chr5 136973808 136974093 -15563166 - B4 SINE B4 -1 291 31 1 1630 236 294 48 42 chr5 136974101 136974267 -15562992 + MIRb SINE MIR 32 204 -72 1 1630 369 0 0 0 chr5 136974285 136974326 -15562933 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1630 510 288 14 61 chr5 136974338 136974486 -15562773 + B1F1 SINE Alu 8 148 -1 1 1630 418 183 0 47 chr5 136974499 136974585 -15562674 + PB1D10 SINE Alu 24 105 -12 1 1630 357 239 23 34 chr5 136974657 136974775 -15562484 + ID4 SINE ID 2 115 -37 1 1630 787 232 77 0 chr5 136975642 136975849 -15561410 + ID_B1 SINE B4 2 224 0 1 1630 279 0 0 0 chr5 136976869 136976900 -15560359 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1630 419 278 10 0 chr5 136977061 136977158 -15560101 + PB1D10 SINE Alu 18 115 -2 1 1630 617 264 20 14 chr5 136977161 136977307 -15559952 + ID_B1 SINE B4 78 224 0 1 1630 198 0 0 0 chr5 136977329 136977351 -15559908 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1 1630 469 329 25 0 chr5 136977655 136977813 -15559446 - RSINE1 SINE B4 0 165 4 1 1630 678 25 0 0 chr5 136977837 136977917 -15559342 + (TC)n Simple_repeat Simple_repeat 2 81 0 1 1630 495 296 0 27 chr5 136977931 136978077 -15559182 - B4A SINE B4 -149 143 2 1 1630 276 308 0 0 chr5 136978825 136978890 -15558369 + ID_B1 SINE B4 88 152 -72 1 1630 244 299 115 0 chr5 136978890 136978912 -15558347 + PB1D9 SINE Alu 7 103 -17 1 1630 392 278 184 13 chr5 136978967 136979200 -15558059 + B4 SINE B4 2 274 -18 1 1630 399 21 0 0 chr5 136980479 136980527 -15556732 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1630 697 229 172 5 chr5 136981128 136981313 -15555946 + ID_B1 SINE B4 40 257 -35 1 1630 21 57 0 0 chr5 136981782 136981817 -15555442 + AT_rich Low_complexity Low_complexity 1 35 0 1 1630 721 114 8 8 chr5 136982488 136982612 -15554647 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 1 1630 433 256 82 8 chr5 136982633 136982755 -15554504 - ID_B1 SINE B4 -12 212 82 1 1630 259 338 0 0 chr5 136983152 136983232 -15554027 + ID4 SINE ID 1 80 -3 1 1630 725 115 378 0 chr5 136983736 136983892 -15553367 + B3 SINE B2 2 216 0 1 1630 24 0 0 0 chr5 136983936 136983960 -15553299 + AT_rich Low_complexity Low_complexity 1 24 0 1 1630 275 219 29 14 chr5 136984014 136984083 -15553176 + Lx9 LINE L1 6404 6463 -1181 1 1630 536 160 7 144 chr5 136984818 136984855 -15552404 - B1_Mur2 SINE Alu 0 149 114 1 1630 225 0 0 0 chr5 136984855 136984880 -15552379 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1 1630 536 160 7 144 chr5 136984880 136984903 -15552356 - B1_Mur2 SINE Alu -36 113 103 1 1630 261 0 0 0 chr5 136984903 136984932 -15552327 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1630 565 91 13 0 chr5 136984932 136985009 -15552250 - PB1D9 SINE Alu -13 107 30 1 1630 304 224 46 23 chr5 136985235 136985322 -15551937 + B4 SINE B4 60 148 -144 1 1630 1336 270 75 98 chr5 136985998 136986528 -15550731 + MER44B DNA MER2_type 33 550 0 1 1630 213 108 0 0 chr5 136986604 136986641 -15550618 + (A)n Simple_repeat Simple_repeat 1 37 0 1 1630 500 313 7 15 chr5 136986653 136986789 -15550470 + ID_B1 SINE B4 84 218 -6 1 1630 701 212 7 21 chr5 136986795 136986935 -15550324 + RSINE1 SINE B4 28 165 0 1 1630 320 216 219 45 chr5 136986991 136987146 -15550113 + B3A SINE B2 1 182 -16 1 1630 216 191 0 0 chr5 136987164 136987211 -15550048 + A-rich Low_complexity Low_complexity 1 47 0 1 1630 954 273 7 85 chr5 136987679 136987951 -15549308 + B4 SINE B4 42 292 0 1 1630 716 274 127 0 chr5 136988097 136988294 -15548965 + ID_B1 SINE B4 3 224 0 1 1630 180 125 0 0 chr5 136988552 136988584 -15548675 + (G)n Simple_repeat Simple_repeat 1 32 0 1 1630 483 18 0 0 chr5 136988676 136988732 -15548527 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1630 201 277 0 0 chr5 136988926 136988973 -15548286 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 1 1630 360 260 67 9 chr5 136988976 136989081 -15548178 - B4 SINE B4 0 292 182 1 1630 381 120 316 53 chr5 136989084 136989116 -15548143 - B2_Mm2 SINE B2 -5 190 162 1 1630 225 0 0 0 chr5 136989116 136989141 -15548118 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 1630 381 120 316 53 chr5 136989141 136989222 -15548037 - B2_Mm2 SINE B2 -34 161 47 1 1630 1273 107 11 0 chr5 136989287 136989465 -15547794 - B2_Mm1t SINE B2 -13 180 1 1 1630 1246 136 19 37 chr5 136990425 136990639 -15546620 + B3 SINE B2 2 211 -5 1 1630 783 222 80 30 chr5 136990670 136990870 -15546389 - B4 SINE B4 -17 275 66 1 1630 195 42 0 0 chr5 136990874 136990898 -15546361 + (TTGTG)n Simple_repeat Simple_repeat 2 25 0 1 1630 292 251 68 3 chr5 136991037 136991116 -15546143 + PB1D10 SINE Alu 8 94 -53 1 1630 988 247 35 5 chr5 136991712 136991911 -15545348 - ID_B1 SINE B4 -16 208 4 1 1630 354 283 10 20 chr5 136991943 136992044 -15545215 - PB1D10 SINE Alu -17 100 1 1 1630 827 251 6 22 chr5 136992852 136993031 -15544228 + ID_B1 SINE B4 32 207 -17 1 1630 471 18 0 0 chr5 136993035 136993091 -15544168 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 1 1630 768 119 0 0 chr5 136993101 136993219 -15544040 + (GGGGA)n Simple_repeat Simple_repeat 2 119 0 1 1630 286 232 0 14 chr5 136993635 136993705 -15543554 + CT-rich Low_complexity Low_complexity 1 69 0 1 1630 491 301 36 14 chr5 136993734 136993872 -15543387 - ID_B1 SINE B4 -80 144 4 1 1630 699 255 21 7 chr5 136993916 136994058 -15543201 - RSINE1 SINE B4 -8 157 14 1 1630 699 248 24 114 chr5 136994559 136994805 -15542454 - ID_B1 SINE B4 0 224 1 1 1630 440 352 86 40 chr5 136995247 136995340 -15541919 + B4 SINE B4 2 110 -182 1 1630 811 238 23 41 chr5 136995340 136995559 -15541700 + B3 SINE B2 2 216 0 1 1630 440 352 86 40 chr5 136995559 136995743 -15541516 + B4 SINE B4 111 292 0 1 1630 254 292 100 40 chr5 136996043 136996193 -15541066 + YREP_Mm Unknown Unknown 132 290 -1522 1 1630 982 268 5 0 chr5 136996076 136996281 -15540978 - ID_B1 SINE B4 0 224 19 1 1630 317 270 54 0 chr5 136996217 136996291 -15540968 - ID4 SINE ID -2 81 4 1 1630 846 163 0 22 chr5 136996536 136996674 -15540585 + B1_Mur4 SINE Alu 16 150 0 1 1630 479 286 24 30 chr5 136996679 136996845 -15540414 + RSINE1 SINE B4 1 165 0 1 1630 423 319 35 0 chr5 136996887 136997003 -15540256 + PB1D7 SINE Alu 1 120 0 1 1630 1176 75 0 0 chr5 136997233 136997379 -15539880 + B1_Mus1 SINE Alu 3 148 0 1 1630 1219 76 11 11 chr5 136997451 136997637 -15539622 + ZP3AR Satellite Satellite 1 186 -26 1 1630 212 139 0 65 chr5 136997599 136997645 -15539614 + ID4 SINE ID 1 43 -40 1 1630 331 207 94 35 chr5 136998167 136998228 -15539031 + BC1_Mm scRNA scRNA 9 76 -76 1 1630 1173 100 0 0 chr5 136998228 136998398 -15538861 + (GGAAA)n Simple_repeat Simple_repeat 5 174 0 1 1630 331 207 94 35 chr5 136998398 136998421 -15538838 + BC1_Mm scRNA scRNA 77 98 -54 1 1630 365 266 16 110 chr5 136999477 136999604 -15537655 - PB1D10 SINE Alu 0 117 3 1 1630 407 300 97 28 chr5 136999697 136999841 -15537418 + RSINE1 SINE B4 2 155 -10 1 1630 380 71 18 0 chr5 136999896 136999952 -15537307 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 1 1630 766 235 13 7 chr5 137000195 137000349 -15536910 - ID_B1 SINE B4 0 224 70 1 1630 213 43 42 42 chr5 137000692 137000740 -15536519 + (CAAAAA)n Simple_repeat Simple_repeat 5 52 0 2 1630 339 370 35 55 chr5 137000945 137001145 -15536114 + MER2 DNA MER2_type 16 211 -134 3 1630 454 231 239 0 chr5 137001236 137001370 -15535889 + B4A SINE B4 123 288 -4 4 1630 281 269 43 0 chr5 137002737 137002830 -15534429 + PB1D10 SINE Alu 1 97 -20 5 1630 722 284 30 39 chr5 137002837 137003068 -15534191 + B4A SINE B4 1 229 -63 6 1630 518 198 47 9 chr5 137003068 137003175 -15534084 + PB1D9 SINE Alu 1 111 -9 7 1630 380 273 143 122 chr5 137003074 137003176 -15534083 + B4A SINE B4 92 219 -73 8 1630 207 0 0 0 chr5 137003176 137003199 -15534060 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 9 1630 380 273 143 122 chr5 137003199 137003224 -15534035 + B4A SINE B4 220 238 -54 8 1630 183 42 0 0 chr5 137003224 137003248 -15534011 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1630 380 273 143 122 chr5 137003248 137003315 -15533944 + B4A SINE B4 239 291 -1 8 1630 208 174 0 42 chr5 137003913 137003961 -15533298 + (CCTG)n Simple_repeat Simple_repeat 3 48 0 1 1630 198 328 90 49 chr5 137003964 137004086 -15533173 + L2a LINE L2 3288 3414 -12 1 1630 1126 254 65 11 chr5 137004089 137004364 -15532895 + B4A SINE B4 1 290 -2 1 1630 914 297 10 0 chr5 137004436 137004638 -15532621 + B4 SINE B4 83 286 -6 1 1630 201 195 24 0 chr5 137004660 137004701 -15532558 + (CATA)n Simple_repeat Simple_repeat 3 44 0 1 1630 25 31 0 0 chr5 137005438 137005470 -15531789 + AT_rich Low_complexity Low_complexity 1 32 0 1 1630 231 250 14 29 chr5 137005517 137005587 -15531672 + GA-rich Low_complexity Low_complexity 3 71 0 1 1630 1617 42 5 0 chr5 137005668 137005858 -15531401 + B2_Mm1a SINE B2 2 192 -1 1 1630 230 143 179 0 chr5 137005858 137005914 -15531345 + Lx9 LINE L1 7539 7604 -40 1 1630 27 0 0 0 chr5 137006020 137006047 -15531212 + AT_rich Low_complexity Low_complexity 1 27 0 2 1630 402 187 53 0 chr5 137006112 137006187 -15531072 + PB1D7 SINE Alu 32 110 -10 2 1630 429 303 73 66 chr5 137006280 137006552 -15530707 + L1MC5 LINE L1 7662 7935 -26 2 1630 310 203 62 0 chr5 137006554 137006618 -15530641 + ID4 SINE ID 4 71 -12 2 1630 893 271 78 89 chr5 137007145 137007337 -15529922 + B4A SINE B4 1 192 -100 2 1630 556 286 14 0 chr5 137007337 137007477 -15529782 + B1_Mur1 SINE Alu 2 143 -6 2 1630 893 271 78 89 chr5 137007477 137007555 -15529704 + B4A SINE B4 193 268 -24 2 1630 252 0 0 0 chr5 137007558 137007586 -15529673 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1630 1065 233 23 0 chr5 137008281 137008496 -15528763 + ID_B1 SINE B4 5 224 0 2 1630 712 200 15 0 chr5 137009087 137009222 -15528037 + B1F2 SINE Alu 13 149 0 2 1630 280 269 36 151 chr5 137009089 137009255 -15528004 + B4A SINE B4 100 246 -46 2 1630 353 266 96 0 chr5 137010100 137010194 -15527065 + PB1D10 SINE Alu 2 104 -13 3 1630 982 228 11 11 chr5 137010217 137010399 -15526860 + B3 SINE B2 18 199 -17 3 1630 638 267 242 5 chr5 137010426 137010578 -15526681 + B4A SINE B4 32 207 -85 3 1630 185 0 40 0 chr5 137010578 137010603 -15526656 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 3 1630 638 267 242 5 chr5 137010603 137010661 -15526598 + B4A SINE B4 208 291 -1 3 1630 316 225 36 48 chr5 137011636 137011720 -15525539 + ID4_ SINE ID 1 83 0 3 1630 260 242 53 91 chr5 137011981 137012113 -15525146 - B1F SINE Alu -12 137 11 3 1630 456 19 0 0 chr5 137012278 137012331 -15524928 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1630 577 296 87 6 chr5 137012994 137013167 -15524092 + ID_B1 SINE B4 12 198 -26 3 1630 541 255 161 6 chr5 137013168 137013330 -15523929 + B3A SINE B2 3 189 -9 3 1630 234 0 0 0 chr5 137013346 137013372 -15523887 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1630 1236 48 0 0 chr5 137013372 137013518 -15523741 - B1_Mus2 SINE Alu 0 147 2 4 1630 24 32 0 0 chr5 137013581 137013612 -15523647 + AT_rich Low_complexity Low_complexity 1 31 0 4 1630 1134 274 7 11 chr5 137014137 137014421 -15522838 + B4A SINE B4 3 285 -7 4 1630 210 268 40 40 chr5 137015160 137015234 -15522025 + ID SINE ID 4 77 -147 4 1630 443 261 36 0 chr5 137015251 137015362 -15521897 - PB1D10 SINE Alu -1 116 2 4 1630 828 262 0 62 chr5 137015540 137015764 -15521495 + ID_B1 SINE B4 2 211 -13 4 1630 291 291 260 0 chr5 137016537 137016664 -15520595 - MER5A1 DNA MER1_type -4 162 3 4 1630 654 235 149 36 chr5 137016706 137016874 -15520385 + B3A SINE B2 3 189 -9 4 1630 368 260 13 0 chr5 137017112 137017189 -15520070 + ID_B1 SINE B4 14 91 -133 4 1630 1147 59 0 0 chr5 137017254 137017390 -15519869 + B1_Mus2 SINE Alu 1 136 -11 4 1630 209 33 33 0 chr5 137017606 137017636 -15519623 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 5 1630 242 305 115 38 chr5 137017966 137017978 -15519281 + YREP_Mm Unknown Unknown 122 133 -1679 5 1630 930 162 0 7 chr5 137017978 137018127 -15519132 - B1_Mus1 SINE Alu 0 148 1 5 1630 242 305 115 38 chr5 137018127 137018271 -15518988 + YREP_Mm Unknown Unknown 134 289 -1523 5 1630 962 278 5 0 chr5 137018154 137018359 -15518900 - ID_B1 SINE B4 0 224 19 5 1630 307 284 54 0 chr5 137018295 137018369 -15518890 - ID4 SINE ID -2 81 4 5 1630 847 148 0 43 chr5 137018614 137018755 -15518504 + B1_Mur4 SINE Alu 16 150 0 5 1630 416 35 35 0 chr5 137018755 137018812 -15518447 + (GAAAA)n Simple_repeat Simple_repeat 5 63 0 5 1630 540 353 37 51 chr5 137018837 137019189 -15518070 + L1M4 LINE L1 2121 2467 -3679 5 1630 737 208 18 94 chr5 137019201 137019371 -15517888 + RSINE1 SINE B4 9 165 0 5 1630 216 205 38 13 chr5 137019392 137019471 -15517788 + (TA)n Simple_repeat Simple_repeat 1 81 0 5 1630 446 321 58 54 chr5 137019610 137019870 -15517389 + L1M4 LINE L1 2690 2950 -3196 5 1630 1283 34 0 0 chr5 137019876 137020023 -15517236 + B1_Mus1 SINE Alu 2 148 0 6 1630 1332 88 22 0 chr5 137020051 137020233 -15517026 + B2_Mm2 SINE B2 5 190 -5 6 1630 773 270 56 66 chr5 137020371 137020657 -15516602 + B4A SINE B4 8 290 -2 6 1630 339 264 0 14 chr5 137020692 137020765 -15516494 + B4A SINE B4 219 290 -2 6 1630 576 97 0 0 chr5 137021404 137021497 -15515762 + (GA)n Simple_repeat Simple_repeat 2 94 0 6 1630 694 179 13 46 chr5 137021637 137021789 -15515470 - B1_Mus1 SINE Alu 0 148 2 6 1630 379 281 7 92 chr5 137022351 137022492 -15514767 + MLT1A1 LTR MaLR 276 404 -4 6 1630 494 288 81 175 chr5 137022625 137022733 -15514526 + B4A SINE B4 3 81 -211 6 1630 817 190 15 0 chr5 137022733 137022870 -15514389 + B1_Mur2 SINE Alu 2 140 -9 6 1630 494 288 81 175 chr5 137022870 137023081 -15514178 + B4A SINE B4 82 292 0 6 1630 771 11 0 0 chr5 137023356 137023444 -15513815 + (GAGAA)n Simple_repeat Simple_repeat 3 90 0 6 1630 498 291 9 108 chr5 137023445 137023583 -15513676 + B3A SINE B2 20 148 -50 7 1630 369 0 0 0 chr5 137023583 137023624 -15513635 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1630 234 0 0 0 chr5 137023624 137023649 -15513610 + (TA)n Simple_repeat Simple_repeat 2 27 0 7 1630 498 291 9 108 chr5 137023649 137023716 -15513543 + B3A SINE B2 148 215 -1 7 1630 342 235 171 17 chr5 137023757 137023874 -15513385 + B1_Mus1 SINE Alu 15 149 0 7 1630 397 262 75 75 chr5 137024132 137024293 -15512966 + ID_B1 SINE B4 11 171 -53 7 1630 488 228 8 50 chr5 137024974 137025094 -15512165 + PB1D10 SINE Alu 1 115 -2 7 1630 397 304 72 22 chr5 137025095 137025233 -15512026 + B4 SINE B4 81 225 -67 7 1630 591 230 102 16 chr5 137025109 137025237 -15512022 + B1F2 SINE Alu 10 148 -1 7 1630 691 236 14 14 chr5 137025333 137025479 -15511780 + B1_Mur1 SINE Alu 4 149 0 7 1630 245 245 0 0 chr5 137025479 137025521 -15511738 + polypurine Low_complexity Low_complexity 13 54 0 7 1630 559 196 87 36 chr5 137026171 137026367 -15510892 + B4A SINE B4 2 207 -85 8 1630 394 241 81 57 chr5 137026334 137026457 -15510802 + ID_B1 SINE B4 99 224 0 8 1630 306 253 0 25 chr5 137026545 137026626 -15510633 - ID4 SINE ID -3 80 2 8 1630 871 239 56 19 chr5 137027194 137027407 -15509852 - ID_B1 SINE B4 -1 223 3 8 1630 876 209 76 36 chr5 137027922 137028145 -15509114 + Charlie13b DNA Charlie 150 381 -131 8 1630 195 241 34 17 chr5 137028751 137028810 -15508449 + L2a LINE L2 3269 3328 -98 8 1630 1131 211 37 0 chr5 137029044 137029262 -15507997 + B4A SINE B4 2 227 -65 8 1630 796 188 8 8 chr5 137029266 137029400 -15507859 + B1_Mus2 SINE Alu 2 135 -12 8 1630 180 0 0 0 chr5 137029401 137029421 -15507838 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1630 450 79 0 0 chr5 137029509 137029572 -15507687 + (CA)n Simple_repeat Simple_repeat 1 63 0 8 1630 509 316 24 37 chr5 137029767 137029931 -15507328 + RSINE1 SINE B4 4 165 0 9 1630 1236 34 0 0 chr5 137030039 137030185 -15507074 + B1_Mus2 SINE Alu 2 147 0 9 1630 246 165 25 12 chr5 137031225 137031305 -15505954 + CT-rich Low_complexity Low_complexity 2 82 0 9 1630 285 203 156 0 chr5 137031311 137031375 -15505884 - ID SINE ID -149 75 2 9 1630 374 236 28 0 chr5 137031996 137032068 -15505191 + ID SINE ID 1 74 -150 9 1630 324 221 0 0 chr5 137032230 137032298 -15504961 + ID4_ SINE ID 8 75 -8 9 1630 998 114 25 0 chr5 137033801 137033957 -15503302 + B2_Mm1t SINE B2 14 179 -14 9 1630 414 76 415 9 chr5 137034023 137034129 -15503130 + B2_Mm2 SINE B2 47 195 0 9 1630 580 225 126 1 chr5 137034235 137034394 -15502865 + ID_B1 SINE B4 70 251 -41 9 1630 1129 36 7 0 chr5 137034477 137034614 -15502645 + B1_Mus1 SINE Alu 1 138 -10 9 1630 219 36 0 0 chr5 137034614 137034642 -15502617 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 9 1630 537 247 58 13 chr5 137034651 137034807 -15502452 + RSINE1 SINE B4 3 165 0 1 1630 30 45 0 0 chr5 137034833 137034877 -15502382 + AT_rich Low_complexity Low_complexity 1 44 0 1 1630 544 283 41 0 chr5 137035316 137035461 -15501798 + RSINE1 SINE B4 1 151 -14 1 1630 856 255 40 54 chr5 137035575 137035853 -15501406 - B4A SINE B4 -18 274 1 1 1630 275 222 32 0 chr5 137036110 137036173 -15501086 - ID_B1 SINE B4 -2 222 158 1 1630 252 239 122 22 chr5 137036115 137036205 -15501054 - PB1D7 SINE Alu -7 113 15 1 1630 297 186 228 65 chr5 137037116 137037208 -15500051 - B1F1 SINE Alu 0 149 43 1 1630 285 210 81 0 chr5 137037480 137037542 -15499717 + B1F2 SINE Alu 40 106 -43 1 1630 22 0 0 0 chr5 137037545 137037567 -15499692 + AT_rich Low_complexity Low_complexity 1 22 0 1 1630 349 266 70 109 chr5 137037918 137037939 -15499320 + B4 SINE B4 74 223 -69 1 1630 771 189 37 22 chr5 137037939 137038074 -15499185 + B1_Mm SINE Alu 9 145 -2 1 1630 246 62 0 0 chr5 137038374 137038406 -15498853 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1630 207 0 0 0 chr5 137039194 137039217 -15498042 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1630 270 0 0 0 chr5 137041128 137041158 -15496101 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1630 209 83 28 0 chr5 137042292 137042328 -15494931 + (CGG)n Simple_repeat Simple_repeat 3 39 0 1 1630 185 65 32 0 chr5 137042348 137042379 -15494880 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1630 291 54 0 0 chr5 137043263 137043300 -15493959 + (CCG)n Simple_repeat Simple_repeat 2 38 0 1 1630 186 43 0 0 chr5 137043331 137043354 -15493905 + (CGG)n Simple_repeat Simple_repeat 3 25 0 1 1630 243 0 0 0 chr5 137044953 137044980 -15492279 + (CA)n Simple_repeat Simple_repeat 1 27 0 1 1630 516 274 35 71 chr5 137045748 137045917 -15491342 + RSINE1 SINE B4 3 165 0 1 1630 26 0 0 0 chr5 137045927 137045953 -15491306 + AT_rich Low_complexity Low_complexity 1 26 0 1 1630 430 226 139 0 chr5 137046543 137046658 -15490601 + ID_B1 SINE B4 87 217 -7 1 1630 457 301 7 20 chr5 137046993 137047139 -15490120 + B1F1 SINE Alu 1 144 -5 1 1630 583 302 18 36 chr5 137047479 137047647 -15489612 + RSINE1 SINE B4 1 165 0 1 1630 383 55 0 18 chr5 137047691 137047746 -15489513 + (CATA)n Simple_repeat Simple_repeat 4 57 0 1 1630 651 271 30 45 chr5 137047814 137048015 -15489244 + B3A SINE B2 1 198 0 1 1630 701 214 0 0 chr5 137048157 137048283 -15488976 + B1_Mus1 SINE Alu 1 126 -22 1 1630 573 52 0 0 chr5 137048466 137048543 -15488716 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1630 331 281 0 0 chr5 137049151 137049233 -15488026 + ID4 SINE ID 1 82 -1 1 1630 225 0 0 0 chr5 137049401 137049426 -15487833 + (TATG)n Simple_repeat Simple_repeat 4 28 0 1 1630 207 130 36 18 chr5 137049611 137049666 -15487593 + CT-rich Low_complexity Low_complexity 1 56 0 1 1630 360 164 0 0 chr5 137049740 137049807 -15487452 + CT-rich Low_complexity Low_complexity 1 67 0 1 1630 536 192 12 77 chr5 137049807 137049976 -15487283 + RMER10B LTR ERVL 186 343 -55 1 1630 297 0 0 0 chr5 137050009 137050042 -15487217 + (TC)n Simple_repeat Simple_repeat 2 34 0 1 1630 342 0 0 0 chr5 137050042 137050079 -15487180 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1630 658 279 6 6 chr5 137050086 137050248 -15487011 - B3A SINE B2 -36 162 1 1 1630 246 329 12 12 chr5 137050270 137050350 -15486909 - RSINE1 SINE B4 -84 81 2 1 1630 210 225 32 140 chr5 137050769 137050862 -15486397 - ID_B1 SINE B4 -69 155 73 1 1630 409 254 18 35 chr5 137050856 137050970 -15486289 + ID_B1 SINE B4 105 216 -8 1 1630 189 224 0 0 chr5 137050997 137051055 -15486204 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1630 422 284 237 17 chr5 137051056 137051292 -15485967 + B4A SINE B4 1 288 -4 1 1630 240 167 0 0 chr5 137051346 137051394 -15485865 + (TA)n Simple_repeat Simple_repeat 2 49 0 1 1630 698 235 75 80 chr5 137051454 137051653 -15485606 - B3A SINE B2 0 198 1 1 1630 251 360 32 8 chr5 137052060 137052186 -15485073 - B1_Mus2 SINE Alu -16 131 3 1 1630 829 283 16 5 chr5 137052186 137052264 -15484995 - ID SINE ID -141 83 4 1 1630 282 282 38 13 chr5 137052390 137052469 -15484790 + MIRb SINE MIR 105 185 -83 1 1630 962 127 49 0 chr5 137052672 137052814 -15484445 - B1_Mur4 SINE Alu -1 149 1 1 1630 868 42 215 8 chr5 137052816 137052937 -15484322 - B1_Mus2 SINE Alu -1 146 1 1 1630 351 309 16 8 chr5 137052967 137053091 -15484168 + (TG)n Simple_repeat Simple_repeat 1 125 0 1 1630 875 213 45 17 chr5 137053091 137053268 -15483991 - B3A SINE B2 -16 182 1 1 1630 300 242 64 32 chr5 137053571 137053631 -15483628 - L1MEg LINE L1 -4137 1947 1882 1 1630 1070 51 71 14 chr5 137053631 137053771 -15483488 - B1_Mus1 SINE Alu 0 148 1 1 1630 300 242 64 32 chr5 137053771 137053804 -15483455 - L1MEg LINE L1 -4203 1881 1852 1 1630 234 0 0 0 chr5 137053805 137053831 -15483428 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1 1630 323 169 14 84 chr5 137053840 137053911 -15483348 - ID4 SINE ID -17 66 1 1 1630 248 293 0 0 chr5 137053911 137053969 -15483290 - ZP3AR Satellite Satellite -117 95 38 1 1630 410 234 121 43 chr5 137054370 137054486 -15482773 + B3A SINE B2 2 126 -72 1 1630 432 258 15 2 chr5 137054489 137054616 -15482643 + B1F2 SINE Alu 1 130 -19 1 1630 624 244 0 132 chr5 137054627 137054816 -15482443 + RSINE1 SINE B4 2 165 0 1 1630 1029 247 27 31 chr5 137055071 137055363 -15481896 - B4 SINE B4 0 292 2 1 1630 365 102 17 0 chr5 137055942 137056001 -15481258 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1630 469 218 35 0 chr5 137056100 137056187 -15481072 + RSINE1 SINE B4 7 96 -69 1 1630 213 39 0 0 chr5 137056202 137056228 -15481031 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1630 833 244 46 46 chr5 137056259 137056478 -15480781 + B4A SINE B4 5 223 -69 1 1630 443 209 0 9 chr5 137056478 137056594 -15480665 + (CA)n Simple_repeat Simple_repeat 1 115 0 1 1630 240 310 0 14 chr5 137057052 137057124 -15480135 - ID4_ SINE ID -12 71 1 1 1630 181 250 62 0 chr5 137058431 137058479 -15478780 + MIR SINE MIR 81 131 -131 1 1630 845 240 80 5 chr5 137058548 137058749 -15478510 + B3 SINE B2 1 216 0 1 1630 659 165 65 24 chr5 137058783 137058907 -15478352 - B1_Mur1 SINE Alu -18 131 3 1 1630 299 284 0 29 chr5 137058940 137059009 -15478250 + ID4 SINE ID 3 69 -14 1 1630 630 203 57 57 chr5 137059034 137059119 -15478140 + ID_B1 SINE B4 1 157 -67 1 1630 328 233 58 11 chr5 137059119 137059191 -15478068 + B1_Mus2 SINE Alu 1 77 -70 1 1630 564 322 28 0 chr5 137059191 137059368 -15477891 + B3A SINE B2 1 182 -16 1 1630 328 233 58 11 chr5 137059368 137059382 -15477877 + B1_Mus2 SINE Alu 78 90 -57 1 1630 243 299 30 0 chr5 137059403 137059470 -15477789 + ID_B1 SINE B4 142 210 -14 1 1630 303 28 0 0 chr5 137059471 137059507 -15477752 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1 1630 458 250 28 0 chr5 137059611 137059719 -15477540 - PB1D10 SINE Alu -6 111 1 1 1630 369 198 22 55 chr5 137059884 137059975 -15477284 - PB1D10 SINE Alu 0 117 30 1 1630 1127 93 0 112 chr5 137059943 137060148 -15477111 + ZP3AR Satellite Satellite 19 200 -12 1 1630 517 57 33 33 chr5 137060218 137060309 -15476950 + L1Md_F2 LINE L1 6492 6582 0 1 1630 1300 63 63 7 chr5 137061238 137061442 -15475817 + ZP3AR Satellite Satellite 1 215 0 1 1630 261 312 38 0 chr5 137061442 137061522 -15475737 + ID2 SINE ID 1 83 0 1 1630 207 311 67 13 chr5 137061751 137061826 -15475433 + MIRc SINE MIR 86 164 -104 1 1630 191 152 22 0 chr5 137061927 137061973 -15475286 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1630 21 57 0 0 chr5 137062022 137062057 -15475202 + AT_rich Low_complexity Low_complexity 1 35 0 1 1630 216 200 0 0 chr5 137062081 137062126 -15475133 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 1 1630 411 298 24 32 chr5 137062214 137062339 -15474920 - B1F1 SINE Alu -1 148 25 1 1630 658 200 16 16 chr5 137062922 137063049 -15474210 - RSINE1 SINE B4 -28 137 11 1 1630 224 267 39 26 chr5 137062980 137063057 -15474202 - B3A SINE B2 -120 78 1 1 1630 297 0 0 0 chr5 137063116 137063149 -15474110 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1630 1082 78 7 0 chr5 137063667 137063821 -15473438 + (GGAGAA)n Simple_repeat Simple_repeat 3 157 0 1 1630 1029 58 0 0 chr5 137063821 137063957 -15473302 + (GAAA)n Simple_repeat Simple_repeat 1 137 0 1 1630 657 185 34 0 chr5 137064040 137064159 -15473100 - B1_Mur3 SINE Alu -26 123 1 1 1630 650 280 60 54 chr5 137064161 137064346 -15472913 - B3A SINE B2 -5 193 8 1 1630 524 234 9 0 chr5 137064369 137064476 -15472783 - ID_B1 SINE B4 -21 203 96 1 1630 261 295 91 45 chr5 137064849 137064959 -15472300 + PB1D10 SINE Alu 2 116 -1 1 1630 346 250 227 0 chr5 137064970 137065098 -15472161 + B3A SINE B2 7 163 -35 1 1630 966 202 10 76 chr5 137065107 137065305 -15471954 + B3 SINE B2 26 210 -6 1 1630 1567 59 0 0 chr5 137065394 137065867 -15471392 + ZP3AR Satellite Satellite 1 473 0 1 1630 234 329 12 12 chr5 137065867 137065950 -15471309 + ID4 SINE ID 1 83 0 1 1630 437 206 98 49 chr5 137066434 137066536 -15470723 - PB1D9 SINE Alu 0 120 14 1 1630 1146 76 7 0 chr5 137066564 137066709 -15470550 - B1_Mus2 SINE Alu -1 146 1 1 1630 616 267 16 13 chr5 137066745 137067056 -15470203 + CT-rich Low_complexity Low_complexity 1 311 0 1 1630 247 242 61 0 chr5 137067070 137067136 -15470123 - ID4_ SINE ID -11 72 3 2 1630 533 250 0 43 chr5 137067169 137067186 -15470073 + ID_B1 SINE B4 81 212 -12 2 1630 818 149 0 0 chr5 137067186 137067307 -15469952 + B1_Mur2 SINE Alu 17 137 -12 2 1630 618 14 0 0 chr5 137067307 137067378 -15469881 + (GA)n Simple_repeat Simple_repeat 2 72 0 2 1630 326 312 32 0 chr5 137067416 137067509 -15469750 + B1F1 SINE Alu 54 149 0 2 1630 1050 58 72 7 chr5 137067512 137067651 -15469608 - B1_Mus1 SINE Alu 0 148 1 2 1630 252 0 0 0 chr5 137067655 137067683 -15469576 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1630 387 0 0 0 chr5 137068258 137068301 -15468958 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1630 676 244 25 13 chr5 137068319 137068477 -15468782 - RSINE1 SINE B4 -3 162 3 2 1630 614 266 6 37 chr5 137068523 137068687 -15468572 - RSINE1 SINE B4 -4 161 3 2 1630 356 289 0 76 chr5 137068939 137068963 -15468296 + RSINE1 SINE B4 2 24 -141 2 1630 737 180 180 55 chr5 137068963 137069163 -15468096 + URR1B DNA MER1_type 1 225 0 2 1630 356 289 0 76 chr5 137069163 137069243 -15468016 + RSINE1 SINE B4 25 98 -67 2 1630 229 247 43 53 chr5 137069238 137069332 -15467927 + B4A SINE B4 57 149 -143 2 1630 278 234 15 15 chr5 137069281 137069346 -15467913 + B1F1 SINE Alu 14 78 -71 2 1630 676 273 139 6 chr5 137069767 137070028 -15467231 + B4A SINE B4 9 280 -12 2 1630 923 238 30 48 chr5 137070290 137070520 -15466739 + B4A SINE B4 2 227 -65 2 1630 754 201 36 42 chr5 137070520 137070686 -15466573 + RSINE1 SINE B4 1 165 0 2 1630 182 174 22 0 chr5 137070686 137070732 -15466527 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1630 513 0 0 0 chr5 137071090 137071147 -15466112 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1630 221 125 0 91 chr5 137071288 137071332 -15465927 - ID SINE ID -183 41 2 2 1630 269 26 0 26 chr5 137071380 137071419 -15465840 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2 1630 832 230 33 0 chr5 137071425 137071577 -15465682 - RSINE1 SINE B4 -1 164 8 2 1630 450 79 0 0 chr5 137071899 137071962 -15465297 + (TG)n Simple_repeat Simple_repeat 1 63 0 2 1630 389 256 254 8 chr5 137071972 137072022 -15465237 - B4 SINE B4 -14 278 217 2 1630 342 0 0 0 chr5 137072022 137072060 -15465199 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2 1630 389 256 254 8 chr5 137072060 137072143 -15465116 - B4 SINE B4 -76 216 113 2 1630 738 278 5 54 chr5 137072144 137072365 -15464894 - B4 SINE B4 -72 220 11 2 1630 546 279 7 79 chr5 137072362 137072514 -15464745 - B1F1 SINE Alu 0 149 9 2 1630 279 0 0 0 chr5 137072540 137072571 -15464688 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1630 1126 89 0 0 chr5 137072571 137072707 -15464552 - B1_Mus2 SINE Alu -9 138 3 2 1630 753 169 41 27 chr5 137072720 137072866 -15464393 - B1_Mur1 SINE Alu 0 149 2 2 1630 337 305 16 48 chr5 137073155 137073279 -15463980 + PB1D9 SINE Alu 1 120 0 2 1630 318 50 0 0 chr5 137073297 137073337 -15463922 + (A)n Simple_repeat Simple_repeat 1 40 0 2 1630 400 219 0 0 chr5 137073342 137073415 -15463844 + B1_Mus2 SINE Alu 2 74 -73 2 1630 497 135 11 0 chr5 137073415 137073504 -15463755 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 2 1630 324 258 35 9 chr5 137073809 137073937 -15463322 - ID4_ SINE ID -18 134 1 2 1630 1540 62 26 3 chr5 137073901 137074134 -15463125 - ZP3AR Satellite Satellite -21 238 1 2 1630 266 276 105 0 chr5 137074162 137074238 -15463021 - B1_Mus1 SINE Alu -54 94 11 2 1630 726 134 62 76 chr5 137074280 137074425 -15462834 + B1_Mur4 SINE Alu 7 149 -1 2 1630 225 0 0 0 chr5 137074425 137074450 -15462809 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2 1630 363 236 88 25 chr5 137074811 137074957 -15462302 + ID_B1 SINE B4 85 238 -54 2 1630 838 238 48 29 chr5 137074957 137075165 -15462094 + ID_B1 SINE B4 12 223 -1 2 1630 185 143 48 0 chr5 137075168 137075210 -15462049 + GA-rich Low_complexity Low_complexity 3 46 0 2 1630 520 208 64 28 chr5 137075695 137075825 -15461434 + B1_Mus2 SINE Alu 15 149 0 2 1630 286 215 62 0 chr5 137075874 137075939 -15461320 - ZP3AR Satellite Satellite -120 92 24 2 1630 306 253 95 12 chr5 137076073 137076157 -15461102 + ZP3AR Satellite Satellite 47 137 -75 2 1630 1277 160 47 0 chr5 137076161 137076373 -15460886 - URR1B DNA MER1_type -3 222 1 2 1630 1758 232 11 47 chr5 137076775 137077155 -15460104 - MTD LTR MaLR -7 412 47 2 1630 1180 49 21 0 chr5 137077155 137077299 -15459960 + B1_Mm SINE Alu 1 147 0 2 1630 191 61 30 0 chr5 137077301 137077334 -15459925 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2 1630 290 180 0 103 chr5 137077334 137077402 -15459857 - MTD LTR MaLR -360 61 1 2 1630 22 0 0 0 chr5 137077413 137077435 -15459824 + AT_rich Low_complexity Low_complexity 1 22 0 2 1630 685 167 9 9 chr5 137077435 137077550 -15459709 + PB1D9 SINE Alu 1 115 -5 2 1630 1246 48 0 0 chr5 137077557 137077703 -15459556 + B1_Mm SINE Alu 1 146 -1 2 1630 690 233 91 32 chr5 137077722 137077908 -15459351 - B3A SINE B2 0 198 2 2 1630 422 308 42 55 chr5 137077942 137078107 -15459152 - RSINE1 SINE B4 -1 164 2 2 1630 1206 61 0 0 chr5 137078235 137078382 -15458877 - B1_Mus2 SINE Alu 0 147 1 2 1630 236 87 8 24 chr5 137078412 137078457 -15458802 + B1F SINE Alu 62 133 -16 2 1630 577 219 152 39 chr5 137078459 137078630 -15458629 + ID_B1 SINE B4 43 224 0 2 1630 284 273 330 0 chr5 137078643 137078749 -15458510 + RSINE1 SINE B4 1 141 -24 2 1630 261 0 0 0 chr5 137079137 137079166 -15458093 + (T)n Simple_repeat Simple_repeat 1 29 0 2 1630 198 0 0 0 chr5 137079370 137079392 -15457867 + (T)n Simple_repeat Simple_repeat 1 22 0 2 1630 998 262 9 0 chr5 137079925 137080139 -15457120 - ID_B1 SINE B4 -7 217 2 2 1630 567 0 0 0 chr5 137080383 137080446 -15456813 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 2 1630 609 281 141 10 chr5 137080713 137080911 -15456348 + B4A SINE B4 1 224 -68 2 1630 797 253 0 0 chr5 137080915 137081073 -15456186 + RSINE1 SINE B4 2 159 -6 2 1630 729 231 44 39 chr5 137081917 137082120 -15455139 + ID_B1 SINE B4 3 206 -18 2 1630 189 107 0 0 chr5 137082120 137082148 -15455111 + (TC)n Simple_repeat Simple_repeat 2 29 0 2 1630 284 151 53 40 chr5 137082150 137082226 -15455033 + A-rich Low_complexity Low_complexity 2 78 0 2 1630 333 329 69 12 chr5 137082526 137082686 -15454573 - MIR SINE MIR 0 262 94 2 1630 255 333 25 0 chr5 137083219 137083300 -15453959 - ID4 SINE ID 0 83 1 2 1630 1133 64 6 6 chr5 137083300 137083458 -15453801 - ZP3AR Satellite Satellite -10 202 45 2 1630 36 23 0 0 chr5 137083467 137083510 -15453749 + AT_rich Low_complexity Low_complexity 1 43 0 2 1630 1075 97 0 0 chr5 137083510 137083644 -15453615 - B1_Mus1 SINE Alu -13 135 2 2 1630 1687 26 0 0 chr5 137083654 137083847 -15453412 - B2_Mm1a SINE B2 0 193 1 2 1630 528 239 16 41 chr5 137083917 137084039 -15453220 - RSINE1 SINE B4 -45 120 2 2 1630 325 283 70 10 chr5 137084057 137084157 -15453102 - PB1D10 SINE Alu -10 107 2 2 1630 509 275 55 24 chr5 137084158 137084322 -15452937 + B4A SINE B4 78 246 -46 2 1630 488 268 76 87 chr5 137084345 137084529 -15452730 + B3A SINE B2 1 182 -16 2 1630 326 288 93 70 chr5 137084958 137085130 -15452129 + MIR SINE MIR 21 196 -66 2 1630 419 264 122 16 chr5 137085286 137085409 -15451850 + ID_B1 SINE B4 78 213 -11 2 1630 323 224 0 0 chr5 137085377 137085435 -15451824 - PB1D10 SINE Alu -39 78 21 2 1630 524 239 142 40 chr5 137085440 137085588 -15451671 + RSINE1 SINE B4 2 164 -1 2 1630 204 226 19 19 chr5 137085600 137085654 -15451605 + C-rich Low_complexity Low_complexity 3 56 0 2 1630 909 147 0 22 chr5 137085722 137085861 -15451398 + B1_Mur3 SINE Alu 3 138 -11 2 1630 215 31 31 0 chr5 137085861 137085893 -15451366 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2 1630 361 230 14 0 chr5 137086463 137086537 -15450722 - ID4 SINE ID -7 76 2 2 1630 474 18 0 0 chr5 137086545 137086600 -15450659 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 1630 642 236 128 36 chr5 137086625 137086875 -15450384 - B4A SINE B4 -19 273 1 2 1630 234 0 0 0 chr5 137086908 137086934 -15450325 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2 1630 409 292 80 0 chr5 137087037 137087174 -15450085 - B1_Mur3 SINE Alu -1 148 1 2 1630 988 223 5 0 chr5 137087174 137087250 -15450009 - ID SINE ID -143 81 5 2 1630 572 234 67 61 chr5 137087351 137087515 -15449744 + RSINE1 SINE B4 1 165 0 2 1630 451 285 98 31 chr5 137087532 137087695 -15449564 + B3A SINE B2 9 182 -16 2 1630 303 203 0 0 chr5 137087695 137087769 -15449490 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1630 2488 153 63 50 chr5 137087876 137088399 -15448860 + RMER1B Other Other 375 904 -162 2 1630 233 125 0 0 chr5 137088405 137088437 -15448822 + RMER1B Other Other 873 904 -162 2 1630 262 62 0 0 chr5 137088443 137088475 -15448784 + RMER1B Other Other 873 904 -162 2 1630 233 125 0 0 chr5 137088489 137088521 -15448738 + RMER1B Other Other 873 904 -162 2 1630 653 164 20 45 chr5 137088542 137088758 -15448501 + RMER1B Other Other 828 1057 -9 2 1630 1036 136 31 37 chr5 137088775 137088966 -15448293 + B2_Mm2 SINE B2 1 190 -5 2 1630 1017 201 13 27 chr5 137089070 137089295 -15447964 - URR1A DNA MER1_type 0 226 5 2 1630 451 263 33 17 chr5 137089297 137089417 -15447842 + RSINE1 SINE B4 15 136 -29 2 1630 21 36 0 0 chr5 137089427 137089455 -15447804 + AT_rich Low_complexity Low_complexity 1 28 0 2 1630 218 210 79 16 chr5 137090020 137090083 -15447176 + PB1D7 SINE Alu 54 120 0 2 1630 432 277 26 18 chr5 137090139 137090251 -15447008 + B1F SINE Alu 1 113 -36 3 1630 367 287 95 9 chr5 137090251 137090367 -15446892 + RSINE1 SINE B4 2 127 -38 3 1630 21 36 0 0 chr5 137090388 137090416 -15446843 + AT_rich Low_complexity Low_complexity 1 28 0 3 1630 729 167 48 61 chr5 137090419 137090566 -15446693 + B1_Mur3 SINE Alu 3 147 -2 3 1630 1312 146 0 107 chr5 137090642 137090895 -15446364 - URR1A DNA MER1_type 0 226 1 3 1630 505 214 9 35 chr5 137090975 137091091 -15446168 + B1_Mur4 SINE Alu 16 128 -22 3 1630 412 246 153 22 chr5 137091143 137091280 -15445979 + RSINE1 SINE B4 2 156 -9 3 1630 23 0 0 0 chr5 137091280 137091303 -15445956 + AT_rich Low_complexity Low_complexity 1 23 0 3 1630 346 281 98 0 chr5 137091305 137091387 -15445872 + ZP3AR Satellite Satellite 38 127 -85 3 1630 690 233 124 11 chr5 137091435 137091613 -15445646 + B3A SINE B2 1 198 0 3 1630 216 86 0 0 chr5 137091623 137091658 -15445601 + (A)n Simple_repeat Simple_repeat 1 35 0 3 1630 548 259 40 33 chr5 137091780 137091964 -15445295 + B3A SINE B2 3 191 -7 3 1630 378 42 0 0 chr5 137091967 137092015 -15445244 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 3 1630 774 122 33 33 chr5 137092569 137092721 -15444538 + RMER17B LTR ERVK 312 463 -495 3 1630 465 227 28 111 chr5 137092784 137092814 -15444445 + MT2B LTR ERVL 133 150 -451 3 1630 969 169 0 0 chr5 137092814 137092962 -15444297 + B1_Mur3 SINE Alu 1 148 -1 3 1630 445 222 89 0 chr5 137093027 137093117 -15444142 + RSINE1 SINE B4 24 121 -44 3 1630 489 262 53 101 chr5 137093218 137093426 -15443833 + ID_B1 SINE B4 2 199 -25 3 1630 181 196 18 18 chr5 137094080 137094137 -15443122 + CT-rich Low_complexity Low_complexity 2 58 0 3 1630 441 0 0 0 chr5 137094159 137094208 -15443051 + (TC)n Simple_repeat Simple_repeat 1 49 0 3 1630 402 21 0 0 chr5 137094208 137094254 -15443005 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1630 293 314 0 29 chr5 137094289 137094394 -15442865 + B1F SINE Alu 2 103 -46 3 1630 321 271 145 39 chr5 137094417 137094624 -15442635 + L1ME2z LINE L1 6197 6425 -19 3 1630 219 198 0 55 chr5 137094735 137094807 -15442452 + CT-rich Low_complexity Low_complexity 20 88 0 3 1630 307 255 153 0 chr5 137094807 137094905 -15442354 - PB1D10 SINE Alu 0 117 5 3 1630 219 198 0 55 chr5 137094905 137094923 -15442336 + polypyrimidine Low_complexity Low_complexity 3 19 0 3 1630 262 300 0 14 chr5 137094930 137095001 -15442258 + CT-rich Low_complexity Low_complexity 2 71 0 3 1630 330 234 234 0 chr5 137095002 137095096 -15442163 - B1F SINE Alu 0 120 5 3 1630 264 100 0 0 chr5 137095106 137095146 -15442113 + (TCCC)n Simple_repeat Simple_repeat 2 41 0 3 1630 332 323 37 15 chr5 137095413 137095548 -15441711 + MIRb SINE MIR 48 185 -83 3 1630 773 231 71 67 chr5 137096207 137096490 -15440769 - B4A SINE B4 -1 291 8 3 1630 195 42 0 0 chr5 137096515 137096539 -15440720 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 3 1630 393 211 13 6 chr5 137096539 137096626 -15440633 - PB1D9 SINE Alu -12 115 24 3 1630 202 250 100 0 chr5 137096774 137096834 -15440425 - L2c LINE L2 -188 3199 3134 3 1630 1038 98 8 0 chr5 137096893 137097026 -15440233 + B1_Mus1 SINE Alu 3 136 -12 3 1630 339 227 150 30 chr5 137097064 137097164 -15440095 + PB1D7 SINE Alu 1 112 -8 3 1630 463 218 273 49 chr5 137097225 137097408 -15439851 - ID_B1 SINE B4 0 224 1 3 1630 823 212 0 0 chr5 137097762 137097908 -15439351 + RSINE1 SINE B4 3 148 -17 3 1630 278 98 0 19 chr5 137097936 137097988 -15439271 + (TTTTC)n Simple_repeat Simple_repeat 2 52 0 3 1630 221 209 23 0 chr5 137098135 137098178 -15439081 + PB1D7 SINE Alu 73 116 -4 3 1630 243 0 0 0 chr5 137098301 137098328 -15438931 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1630 1164 82 0 0 chr5 137098328 137098474 -15438785 - B1_Mm SINE Alu 0 147 2 3 1630 407 234 117 0 chr5 137099440 137099451 -15437808 - ID_B1 SINE B4 -22 202 98 3 1630 410 217 24 0 chr5 137099451 137099534 -15437725 - PB1D10 SINE Alu -16 101 17 3 1630 330 295 65 45 chr5 137099902 137100101 -15437158 - Lx8 LINE L1 -464 7009 6807 3 1630 970 118 15 0 chr5 137100108 137100243 -15437016 - B1_Mur4 SINE Alu -13 137 1 3 1630 607 262 27 7 chr5 137100289 137100435 -15436824 + RSINE1 SINE B4 11 159 -6 3 1630 330 287 77 49 chr5 137100435 137100464 -15436795 + B2_Mm2 SINE B2 37 189 -6 3 1630 402 280 14 36 chr5 137100599 137100719 -15436540 - PB1D10 SINE Alu -22 127 5 3 1630 322 115 33 0 chr5 137100727 137100788 -15436471 + (TCCC)n Simple_repeat Simple_repeat 3 65 0 3 1630 607 242 32 0 chr5 137100796 137100920 -15436339 - ID_B1 SINE B4 -17 207 80 3 1630 747 249 71 16 chr5 137100944 137101128 -15436131 + ID_B1 SINE B4 16 209 -15 3 1631 415 318 32 141 chr5 137101821 137101942 -15435317 + ID_B1 SINE B4 1 123 -101 3 1631 863 191 14 0 chr5 137101942 137102089 -15435170 + B1_Mur4 SINE Alu 1 149 -1 3 1631 415 318 32 141 chr5 137102089 137102216 -15435043 + ID_B1 SINE B4 124 222 -2 3 1631 837 85 0 17 chr5 137102256 137102376 -15434883 - B1_Mus1 SINE Alu 0 148 31 3 1631 489 191 6 190 chr5 137102376 137102430 -15434829 - ID_B1 SINE B4 0 224 83 3 1631 782 208 7 0 chr5 137102430 137102574 -15434685 + ZP3AR Satellite Satellite 51 195 -17 3 1631 753 284 58 44 chr5 137102571 137102796 -15434463 - B4 SINE B4 -63 229 2 3 1631 666 122 0 34 chr5 137104017 137104136 -15433123 - BC1_Mm scRNA scRNA -37 115 1 3 1631 938 9 9 0 chr5 137104273 137104384 -15432875 + (TG)n Simple_repeat Simple_repeat 2 113 0 3 1631 972 144 0 0 chr5 137104384 137104523 -15432736 - B1_Mus1 SINE Alu -9 139 1 3 1631 621 147 0 0 chr5 137104705 137104814 -15432445 + (TC)n Simple_repeat Simple_repeat 2 110 0 3 1631 21 36 0 0 chr5 137104821 137104849 -15432410 + AT_rich Low_complexity Low_complexity 1 28 0 3 1631 4165 61 27 0 chr5 137104888 137105414 -15431845 - L1_Mus3 LINE L1 0 6638 6099 3 1631 768 165 89 15 chr5 137105415 137105550 -15431709 - B1_Mur2 SINE Alu 0 149 5 3 1631 1924 203 62 7 chr5 137105554 137105640 -15431619 + MT2A LTR ERVL 74 177 -356 3 1631 297 0 0 0 chr5 137105640 137105673 -15431586 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1631 207 0 0 0 chr5 137105673 137105695 -15431564 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 1631 1924 203 62 7 chr5 137105695 137106024 -15431235 + MT2A LTR ERVL 178 512 -21 3 1631 285 98 0 0 chr5 137106026 137106067 -15431192 + (TCC)n Simple_repeat Simple_repeat 3 43 0 3 1631 861 153 7 7 chr5 137106067 137106205 -15431054 - B1_Mus1 SINE Alu 0 148 11 3 1631 399 250 118 1 chr5 137106224 137106336 -15430923 + MTEa LTR MaLR 237 370 -9 3 1631 256 271 9 103 chr5 137106463 137106570 -15430689 + RSINE1 SINE B4 44 140 -25 3 1631 287 316 0 20 chr5 137106827 137106927 -15430332 + MER97c DNA MER1_type? 1 98 -992 3 1631 872 272 67 35 chr5 137107043 137107298 -15429961 + B4 SINE B4 3 265 -27 3 1631 550 188 40 0 chr5 137107262 137107363 -15429896 + B1_Mur4 SINE Alu 31 135 -15 3 1631 265 219 36 50 chr5 137107293 137107447 -15429812 - RMER17D LTR ERVK -373 516 365 3 1631 858 158 13 33 chr5 137107447 137107598 -15429661 + B1_Mur3 SINE Alu 1 148 -1 3 1631 265 219 36 50 chr5 137107598 137107664 -15429595 - RMER17D LTR ERVK -525 364 299 3 1631 1187 100 0 11 chr5 137107664 137107846 -15429413 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1631 1133 106 4 13 chr5 137107918 137108145 -15429114 + (CA)n Simple_repeat Simple_repeat 1 225 0 3 1631 263 307 11 0 chr5 137108695 137108783 -15428476 + CT-rich Low_complexity Low_complexity 1 89 0 3 1631 1675 56 5 0 chr5 137108813 137109066 -15428193 - ZP3AR Satellite Satellite -21 254 1 3 1631 291 287 155 0 chr5 137109085 137109214 -15428045 - B1F1 SINE Alu 0 149 1 3 1631 794 260 20 53 chr5 137109413 137109652 -15427607 + ZP3AR Satellite Satellite 1 231 -2 3 1631 347 78 41 17 chr5 137110377 137110441 -15426818 - PB1D10 SINE Alu -63 86 18 3 1631 635 172 66 0 chr5 137110475 137110597 -15426662 - B1_Mur1 SINE Alu -18 131 2 3 1631 631 223 12 87 chr5 137110627 137110703 -15426556 - ID_B1 SINE B4 0 224 154 3 1631 690 194 85 0 chr5 137110703 137110832 -15426427 - B1_Mus1 SINE Alu -6 142 3 3 1631 631 223 12 87 chr5 137110832 137110927 -15426332 - ID_B1 SINE B4 -71 153 66 3 1631 449 214 52 97 chr5 137111114 137111269 -15425990 + B1F SINE Alu 2 149 0 3 1631 300 322 93 33 chr5 137111405 137111670 -15425589 + LTR85b LTR Gypsy? 194 559 -225 3 1631 637 292 34 48 chr5 137111703 137111998 -15425261 + B4A SINE B4 2 292 0 3 1631 256 369 82 8 chr5 137112570 137112704 -15424555 + B1F1 SINE Alu 6 149 0 3 1631 1134 73 6 6 chr5 137112708 137112873 -15424386 + ZP3AR Satellite Satellite 5 169 -43 3 1631 232 305 28 89 chr5 137112965 137113140 -15424119 + MIR SINE MIR 20 185 -83 3 1631 501 244 135 15 chr5 137114252 137114385 -15422874 - B1F SINE Alu 0 149 1 3 1631 487 257 28 0 chr5 137114399 137114508 -15422751 - PB1D10 SINE Alu -5 112 1 3 1631 326 258 26 205 chr5 137114884 137115035 -15422224 - PB1 SINE Alu -1 126 3 3 1631 941 215 26 0 chr5 137115035 137115099 -15422160 - ID SINE ID -141 83 15 3 1631 728 109 67 0 chr5 137115083 137115202 -15422057 + B1_Mus2 SINE Alu 21 147 0 3 1631 189 0 0 0 chr5 137115240 137115261 -15421998 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1631 225 0 0 0 chr5 137115261 137115285 -15421974 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 1631 408 316 7 29 chr5 137115304 137115441 -15421818 - B4A SINE B4 -2 290 157 4 1631 496 288 42 75 chr5 137115560 137115800 -15421459 - B4A SINE B4 -59 233 2 4 1631 425 278 26 53 chr5 137115805 137115957 -15421302 - ID_B1 SINE B4 0 224 77 4 1631 2615 119 85 0 chr5 137116055 137116443 -15420816 - MTC LTR MaLR 0 421 1 4 1631 1099 84 13 0 chr5 137116626 137116780 -15420479 + URR1A DNA MER1_type 71 226 0 4 1631 1528 95 6 6 chr5 137117174 137117540 -15419719 + ZP3AR Satellite Satellite 1 366 0 4 1631 220 246 123 0 chr5 137117514 137117571 -15419688 + ID4_ SINE ID 19 82 -1 4 1631 365 264 9 9 chr5 137118483 137118590 -15418669 + PB1D10 SINE Alu 2 108 -9 4 1631 265 250 0 0 chr5 137118677 137118733 -15418526 + ZP3AR Satellite Satellite 38 93 -119 4 1631 244 274 0 64 chr5 137118682 137118734 -15418525 + ID4 SINE ID 1 52 -31 4 1631 363 270 0 0 chr5 137118734 137118808 -15418451 + ID4_ SINE ID 1 74 -9 4 1631 244 274 0 64 chr5 137118808 137118833 -15418426 + ID4 SINE ID 53 73 -10 4 1631 379 342 9 0 chr5 137118920 137119031 -15418228 - PB1D10 SINE Alu -5 112 1 4 1631 1411 89 21 0 chr5 137119087 137119277 -15417982 + B2_Mm2 SINE B2 2 195 0 4 1631 389 191 147 152 chr5 137119556 137119754 -15417505 - B3A SINE B2 0 198 2 4 1631 351 0 0 0 chr5 137119769 137119808 -15417451 + (TG)n Simple_repeat Simple_repeat 1 39 0 4 1631 456 259 161 15 chr5 137119842 137119979 -15417280 - B3A SINE B2 -27 171 15 4 1631 814 226 140 0 chr5 137120015 137120201 -15417058 + B3 SINE B2 3 214 -2 4 1631 395 267 11 0 chr5 137120217 137120307 -15416952 - PB1D10 SINE Alu -26 91 1 4 1631 550 297 8 0 chr5 137120503 137120631 -15416628 - RSINE1 SINE B4 -35 130 2 4 1631 560 230 9 0 chr5 137120664 137120777 -15416482 + PB1D9 SINE Alu 7 120 0 4 1631 427 245 27 36 chr5 137120789 137120899 -15416360 + PB1D10 SINE Alu 7 115 -2 4 1631 520 270 8 33 chr5 137120907 137121065 -15416194 + RSINE1 SINE B4 10 165 0 4 1631 516 187 0 0 chr5 137121068 137121191 -15416068 + (CA)n Simple_repeat Simple_repeat 2 124 0 4 1631 183 80 0 0 chr5 137121388 137121413 -15415846 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 4 1631 237 157 19 19 chr5 137121600 137121652 -15415607 - L1MC4a LINE L1 -786 7096 7045 4 1631 1125 215 24 10 chr5 137121674 137121881 -15415378 - B3 SINE B2 -6 210 1 4 1631 656 231 81 52 chr5 137121903 137122113 -15415146 - B3 SINE B2 0 216 1 4 1631 477 202 0 0 chr5 137122177 137122256 -15415003 - ID4 SINE ID -4 79 1 4 1631 1673 66 4 0 chr5 137122256 137122573 -15414686 - ZP3AR Satellite Satellite -11 318 1 4 1631 350 255 117 28 chr5 137122868 137123013 -15414246 + L2c LINE L2 3229 3386 -1 4 1631 295 237 85 9 chr5 137123125 137123225 -15414034 - MIRc SINE MIR -81 181 80 4 1631 225 0 0 0 chr5 137124010 137124035 -15413224 + (TG)n Simple_repeat Simple_repeat 2 26 0 4 1631 372 331 60 48 chr5 137124035 137124203 -15413056 - B3A SINE B2 -28 170 1 4 1631 206 128 0 25 chr5 137124594 137124611 -15412648 + polypyrimidine Low_complexity Low_complexity 23 39 0 4 1631 1392 68 5 45 chr5 137124611 137124811 -15412448 - B2_Mm1t SINE B2 -1 192 1 4 1631 206 128 0 25 chr5 137124811 137124833 -15412426 + polypyrimidine Low_complexity Low_complexity 1 22 0 4 1631 303 214 0 0 chr5 137125247 137125317 -15411942 + CT-rich Low_complexity Low_complexity 3 72 0 4 1631 564 366 33 20 chr5 137125397 137125696 -15411563 - L1MC LINE L1 -497 5743 5442 4 1631 268 224 0 0 chr5 137125774 137125832 -15411427 - ID2 SINE ID -25 58 1 4 1631 1632 33 4 0 chr5 137125794 137126100 -15411159 - ZP3AR Satellite Satellite -26 307 1 4 1631 234 0 0 0 chr5 137126229 137126255 -15411004 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4 1631 788 32 0 0 chr5 137126257 137126350 -15410909 - B1_Mus2 SINE Alu -8 139 47 4 1631 1505 60 5 0 chr5 137126374 137126559 -15410700 + B2_Mm1a SINE B2 2 187 -6 4 1631 249 33 0 0 chr5 137126561 137126591 -15410668 + (TTG)n Simple_repeat Simple_repeat 2 31 0 4 1631 603 295 0 7 chr5 137126592 137126737 -15410522 - B3A SINE B2 -41 157 14 4 1631 2047 201 59 3 chr5 137126737 137127127 -15410132 - MTD LTR MaLR 0 419 8 4 1631 300 403 19 37 chr5 137127211 137127425 -15409834 - L1M2 LINE L1 -946 5197 4988 4 1631 379 239 0 80 chr5 137127431 137127531 -15409728 - PB1D7 SINE Alu -5 115 24 4 1631 680 108 29 19 chr5 137127535 137127639 -15409620 - B1_Mus2 SINE Alu -2 145 41 4 1631 798 31 0 0 chr5 137127641 137127738 -15409521 + (TG)n Simple_repeat Simple_repeat 2 98 0 4 1631 213 244 0 0 chr5 137127751 137127792 -15409467 - B1_Mus2 SINE Alu -71 76 36 4 1631 1524 192 144 17 chr5 137127912 137128272 -15408987 + MTD LTR MaLR 13 418 -1 4 1631 447 268 68 68 chr5 137128290 137128466 -15408793 - B4 SINE B4 -112 180 5 4 1631 353 302 9 28 chr5 137128477 137128586 -15408673 - PB1D10 SINE Alu -2 115 9 4 1631 322 268 18 18 chr5 137128978 137129092 -15408167 + (TG)n Simple_repeat Simple_repeat 1 114 0 4 1631 1136 268 3 50 chr5 137129102 137129385 -15407874 - B4 SINE B4 -11 281 12 4 1631 285 29 0 0 chr5 137129407 137129441 -15407818 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 4 1631 855 194 120 0 chr5 137129441 137129632 -15407627 - ID_B1 SINE B4 -8 216 3 4 1631 1225 127 0 11 chr5 137129953 137130136 -15407123 + B2_Mm2 SINE B2 1 181 -14 4 1631 201 195 0 0 chr5 137130246 137130287 -15406972 + CT-rich Low_complexity Low_complexity 3 43 0 4 1631 523 270 58 0 chr5 137130300 137130437 -15406822 - ID_B1 SINE B4 0 224 80 4 1631 485 251 12 3 chr5 137130437 137130575 -15406684 - PB1D7 SINE Alu -5 144 1 4 1631 408 248 35 17 chr5 137130676 137130791 -15406468 + MIRb SINE MIR 27 143 -125 4 1631 285 211 125 0 chr5 137130809 137130881 -15406378 - B1_Mur4 SINE Alu -37 83 3 4 1631 405 0 0 0 chr5 137130886 137130931 -15406328 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 4 1631 208 176 0 29 chr5 137130949 137131019 -15406240 + (TA)n Simple_repeat Simple_repeat 2 69 0 4 1631 848 230 41 126 chr5 137131094 137131412 -15405847 - B4 SINE B4 0 292 2 4 1631 307 217 39 16 chr5 137131852 137131924 -15405335 + PB1D10 SINE Alu 34 117 -10 4 1631 187 263 0 31 chr5 137131935 137132033 -15405226 + (CATA)n Simple_repeat Simple_repeat 2 96 0 4 1631 291 140 0 0 chr5 137132101 137132151 -15405108 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1631 1867 210 33 31 chr5 137132285 137132674 -15404585 - MTD LTR MaLR -29 390 1 4 1631 352 330 32 80 chr5 137132692 137132880 -15404379 - ORR1E LTR MaLR -65 294 116 4 1631 2533 100 45 18 chr5 137133250 137133646 -15403613 + MTB_Mm LTR MaLR 1 407 0 4 1631 184 317 96 96 chr5 137133886 137134179 -15403080 + L2b LINE L2 2963 3255 -120 4 1631 688 254 7 7 chr5 137134273 137134416 -15402843 - B3A SINE B2 -42 156 14 4 1631 685 235 65 158 chr5 137134544 137134822 -15402437 + MTE2a LTR MaLR 3 254 -125 4 1631 315 161 0 0 chr5 137135000 137135056 -15402203 + (TG)n Simple_repeat Simple_repeat 1 56 0 4 1631 705 296 79 50 chr5 137135058 137135336 -15401923 - B4A SINE B4 0 292 7 4 1631 840 50 198 8 chr5 137135400 137135521 -15401738 - B1_Mm SINE Alu -2 145 2 4 1631 1221 154 33 37 chr5 137135543 137135758 -15401501 - B3 SINE B2 -2 214 1 4 1631 425 300 20 0 chr5 137135765 137135865 -15401394 - ID_B1 SINE B4 -21 203 102 4 1631 362 293 42 17 chr5 137135768 137135886 -15401373 - B1F1 SINE Alu -27 122 2 4 1631 1409 103 9 6 chr5 137136596 137136809 -15400450 + ZP3AR Satellite Satellite 1 213 0 4 1631 230 191 192 68 chr5 137136809 137136882 -15400377 + ID4_ SINE ID 1 82 -1 4 1631 335 230 40 0 chr5 137137055 137137129 -15400130 + PB1D10 SINE Alu 19 95 -22 4 1631 317 255 25 24 chr5 137137129 137137152 -15400107 + ID_B1 SINE B4 123 198 -26 4 1631 218 105 0 26 chr5 137137160 137137199 -15400060 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 4 1631 223 26 24 49 chr5 137137491 137137532 -15399727 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 4 1631 180 0 0 0 chr5 137137536 137137556 -15399703 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 4 1631 566 115 81 0 chr5 137137558 137137645 -15399614 - B1_Mus2 SINE Alu -12 135 42 4 1631 269 125 20 20 chr5 137137602 137137651 -15399608 - 4.5SRNA scRNA scRNA -6 88 40 4 1631 249 159 0 0 chr5 137137651 137137695 -15399564 + (TCTCTG)n Simple_repeat Simple_repeat 1 44 0 4 1631 265 0 0 161 chr5 137137696 137137833 -15399426 + (CTCTG)n Simple_repeat Simple_repeat 1 115 0 4 1631 495 221 0 0 chr5 137137833 137138098 -15399161 + CT-rich Low_complexity Low_complexity 1 265 0 4 1631 225 197 0 0 chr5 137138130 137138191 -15399068 + CT-rich Low_complexity Low_complexity 2 62 0 4 1631 282 219 0 30 chr5 137138196 137138262 -15398997 - ID_B1 SINE B4 -77 147 84 4 1631 337 94 0 36 chr5 137138208 137138263 -15398996 - B1_Mus2 SINE Alu -93 54 2 4 1631 810 102 0 0 chr5 137139148 137139266 -15397993 + (TTTC)n Simple_repeat Simple_repeat 3 120 0 4 1631 1167 70 0 7 chr5 137139266 137139401 -15397858 - B1_Mus2 SINE Alu -11 136 2 4 1631 219 241 132 48 chr5 137139491 137139574 -15397685 + MIRb SINE MIR 87 176 -92 4 1631 384 232 92 46 chr5 137140054 137140185 -15397074 - B1F1 SINE Alu -12 137 1 4 1631 329 298 73 167 chr5 137140185 137140288 -15396971 - ID_B1 SINE B4 -12 212 1 5 1631 337 202 11 53 chr5 137140252 137140346 -15396913 - ZP3AR Satellite Satellite -81 131 42 5 1631 715 219 17 0 chr5 137140881 137141000 -15396259 + ID_B1 SINE B4 84 204 -20 5 1631 248 412 0 9 chr5 137140897 137141012 -15396247 - YREP_Mm Unknown Unknown -1516 296 183 5 1631 239 79 0 26 chr5 137141031 137141070 -15396189 + (GGA)n Simple_repeat Simple_repeat 2 39 0 5 1631 231 260 14 0 chr5 137141094 137141167 -15396092 + (TG)n Simple_repeat Simple_repeat 2 75 0 5 1631 466 218 0 22 chr5 137141256 137141439 -15395820 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1631 219 152 0 0 chr5 137141453 137141499 -15395760 + (TG)n Simple_repeat Simple_repeat 1 46 0 5 1631 231 206 47 93 chr5 137141505 137141612 -15395647 - RLTR40 LTR ERVK -146 671 570 5 1631 215 213 0 0 chr5 137141625 137141672 -15395587 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 5 1631 21 36 0 0 chr5 137142016 137142044 -15395215 + AT_rich Low_complexity Low_complexity 1 28 0 5 1631 1078 219 47 67 chr5 137142111 137142409 -15394850 - B4 SINE B4 0 292 1 5 1631 249 367 0 13 chr5 137142693 137142845 -15394414 + (TG)n Simple_repeat Simple_repeat 1 150 0 5 1631 330 343 0 12 chr5 137142884 137143052 -15394207 + (TG)n Simple_repeat Simple_repeat 1 166 0 5 1631 837 258 14 23 chr5 137143792 137144006 -15393253 - ID_B1 SINE B4 -8 216 5 5 1631 231 198 18 54 chr5 137144024 137144136 -15393123 + CT-rich Low_complexity Low_complexity 4 111 0 5 1631 315 215 62 25 chr5 137144170 137144251 -15393008 - PB1D10 SINE Alu -20 97 14 5 1631 757 219 134 12 chr5 137144755 137144926 -15392333 + B4A SINE B4 43 234 -58 5 1631 392 296 111 8 chr5 137144920 137145046 -15392213 + RSINE1 SINE B4 13 151 -14 5 1631 308 260 14 0 chr5 137145080 137145153 -15392106 + B4A SINE B4 217 290 -2 5 1631 555 16 0 0 chr5 137145566 137145630 -15391629 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 1631 240 35 0 0 chr5 137146001 137146030 -15391229 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 5 1631 414 0 0 0 chr5 137146093 137146139 -15391120 + (TATG)n Simple_repeat Simple_repeat 2 47 0 5 1631 283 303 13 13 chr5 137146139 137146216 -15391043 - ID4 SINE ID -5 78 2 5 1631 386 248 34 103 chr5 137146187 137146304 -15390955 - ZP3AR Satellite Satellite -87 125 17 5 1631 185 200 107 67 chr5 137146312 137146387 -15390872 + MIRc SINE MIR 21 98 -170 5 1631 305 217 0 12 chr5 137146452 137146536 -15390723 + GA-rich Low_complexity Low_complexity 2 84 0 5 1631 298 164 27 14 chr5 137147049 137147123 -15390136 + CT-rich Low_complexity Low_complexity 2 76 0 5 1631 766 258 91 18 chr5 137147199 137147420 -15389839 - B4A SINE B4 -52 240 4 5 1631 490 129 0 73 chr5 137148222 137148331 -15388928 + L1Md_F2 LINE L1 6476 6576 -6 5 1631 744 262 104 5 chr5 137148368 137148578 -15388681 + B4 SINE B4 1 231 -61 5 1631 983 271 28 32 chr5 137148578 137148866 -15388393 + ID_B1 SINE B4 3 288 -4 5 1631 252 224 0 0 chr5 137148926 137148975 -15388284 + GA-rich Low_complexity Low_complexity 4 52 0 5 1631 308 303 48 72 chr5 137149119 137149417 -15387842 + MTEb LTR MaLR 59 363 -16 5 1631 448 92 13 7 chr5 137149534 137149630 -15387629 - B2_Mm2 SINE B2 -14 181 47 5 1631 874 57 57 0 chr5 137149643 137149766 -15387493 - B2_Mm1t SINE B2 -14 179 50 5 1631 273 29 0 0 chr5 137149796 137149830 -15387429 + (TCC)n Simple_repeat Simple_repeat 3 36 0 5 1631 555 247 126 6 chr5 137149833 137150000 -15387259 - B3A SINE B2 -11 187 1 5 1631 1241 105 22 0 chr5 137150009 137150190 -15387069 - B2_Mm2 SINE B2 -10 185 1 5 1631 315 0 0 0 chr5 137150531 137150566 -15386693 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1631 963 118 0 0 chr5 137150567 137150702 -15386557 - B1_Mus1 SINE Alu -13 135 1 5 1631 310 276 69 27 chr5 137151097 137151309 -15385950 + L1MA6 LINE L1 5887 6122 -178 5 1631 21 0 0 0 chr5 137151316 137151337 -15385922 + AT_rich Low_complexity Low_complexity 1 21 0 5 1631 399 261 26 228 chr5 137151801 137151885 -15385374 + B4A SINE B4 43 221 -68 5 1631 837 157 0 50 chr5 137151885 137152026 -15385233 + B1_Mus2 SINE Alu 8 141 -6 5 1631 682 251 85 79 chr5 137152084 137152309 -15384950 + B4 SINE B4 80 292 0 5 1631 907 246 53 13 chr5 137152904 137153131 -15384128 + B4 SINE B4 2 237 -55 5 1631 460 266 177 11 chr5 137153118 137153304 -15383955 + B4A SINE B4 6 222 -70 5 1631 1204 193 5 10 chr5 137153312 137153521 -15383738 + B3 SINE B2 2 209 -7 5 1631 1484 54 5 0 chr5 137153578 137153762 -15383497 + B2_Mm1t SINE B2 2 186 -7 5 1631 337 232 0 0 chr5 137153822 137153878 -15383381 + B4 SINE B4 214 269 -23 5 1631 323 61 41 0 chr5 137153900 137153949 -15383310 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 5 1631 371 233 76 25 chr5 137154312 137154431 -15382828 - B1F1 SINE Alu -18 131 7 5 1631 1247 114 17 16 chr5 137154454 137154704 -15382555 + ZP3AR Satellite Satellite 1 250 0 5 1631 548 259 36 15 chr5 137155347 137155484 -15381775 + B1F SINE Alu 3 142 -7 5 1631 938 233 46 134 chr5 137155502 137155809 -15381450 + B4 SINE B4 9 288 -4 5 1631 475 157 38 38 chr5 137155798 137155904 -15381355 + B1_Mur1 SINE Alu 43 148 -1 5 1631 546 253 93 58 chr5 137155933 137156105 -15381154 - ID_B1 SINE B4 -12 212 35 5 1631 440 204 97 0 chr5 137156202 137156315 -15380944 + B1F SINE Alu 23 146 -3 5 1631 330 344 71 45 chr5 137156590 137156809 -15380450 + MLT1G LTR MaLR 88 315 -240 5 1631 1092 219 50 0 chr5 137156837 137157056 -15380203 + MTE2b LTR MaLR 1 230 -149 5 1631 1192 107 0 12 chr5 137157134 137157304 -15379955 - B2_Mm2 SINE B2 -27 168 1 5 1631 339 194 0 0 chr5 137157408 137157470 -15379789 - PB1D10 SINE Alu -41 76 15 5 1631 224 299 30 0 chr5 137157425 137157492 -15379767 - B4A SINE B4 -148 144 76 5 1631 623 262 57 0 chr5 137157549 137157671 -15379588 - RSINE1 SINE B4 -31 134 6 5 1631 646 253 6 64 chr5 137157929 137158085 -15379174 + ID_B1 SINE B4 46 192 -32 5 1631 421 284 26 8 chr5 137157986 137158103 -15379156 + B1F SINE Alu 13 131 -18 5 1631 237 241 271 24 chr5 137158392 137158477 -15378782 + MTE2b LTR MaLR 274 379 0 5 1631 745 258 50 46 chr5 137158591 137158810 -15378449 + MTD LTR MaLR 6 225 -194 5 1631 573 195 17 4 chr5 137158802 137158917 -15378342 + B3A SINE B2 5 124 -71 5 1631 438 94 0 0 chr5 137158961 137159025 -15378234 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 5 1631 705 208 15 0 chr5 137159028 137159158 -15378101 + MTD LTR MaLR 274 405 -14 5 1631 833 83 8 0 chr5 137159905 137160037 -15377222 + (TG)n Simple_repeat Simple_repeat 1 133 0 5 1631 704 293 43 0 chr5 137160039 137160247 -15377012 - B4A SINE B4 -22 270 54 5 1631 643 184 18 9 chr5 137160288 137160398 -15376861 - PB1D10 SINE Alu -6 111 1 5 1631 1193 37 0 0 chr5 137160717 137160852 -15376407 + B1_Mm SINE Alu 1 135 -12 5 1631 618 237 12 62 chr5 137160852 137160974 -15376285 - MTD LTR MaLR -185 234 120 5 1631 1984 184 144 11 chr5 137160974 137161046 -15376213 - RLTR11A LTR ERVK 0 528 460 5 1631 345 24 0 0 chr5 137161046 137161088 -15376171 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1631 1984 184 144 11 chr5 137161088 137161481 -15375778 - RLTR11A LTR ERVK -69 459 3 5 1631 618 237 12 62 chr5 137161481 137161520 -15375739 - MTD LTR MaLR -300 119 81 5 1631 383 225 12 24 chr5 137161504 137161586 -15375673 - PB1D10 SINE Alu -29 88 8 5 1631 235 274 33 87 chr5 137161509 137161601 -15375658 - MT2B LTR ERVL -360 241 155 5 1631 249 263 145 0 chr5 137161691 137161767 -15375492 + B4 SINE B4 1 87 -205 5 1631 642 269 85 6 chr5 137161797 137161973 -15375286 + B4 SINE B4 80 269 -23 5 1631 486 0 0 0 chr5 137161977 137162031 -15375228 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1631 210 230 40 13 chr5 137162031 137162106 -15375153 + GA-rich Low_complexity Low_complexity 2 78 0 5 1631 1605 113 5 12 chr5 137162636 137162978 -15374281 + ZP3AR Satellite Satellite 1 339 0 5 1631 622 246 0 60 chr5 137163223 137163353 -15373906 + B1_Mur1 SINE Alu 2 126 -23 5 1631 369 0 0 0 chr5 137163353 137163394 -15373865 + (TG)n Simple_repeat Simple_repeat 1 41 0 5 1631 519 17 0 0 chr5 137163394 137163453 -15373806 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1631 622 246 0 60 chr5 137163453 137163472 -15373787 + B1_Mur1 SINE Alu 127 142 -7 5 1631 661 94 16 16 chr5 137163957 137164086 -15373173 + (TCTCTG)n Simple_repeat Simple_repeat 4 132 0 5 1631 342 301 20 98 chr5 137164087 137164107 -15373152 - ID_B1 SINE B4 0 292 217 5 1631 331 250 0 0 chr5 137164111 137164175 -15373084 - tRNA-Ala-GCY_ tRNA tRNA -8 67 4 5 1631 342 301 20 98 chr5 137164183 137164206 -15373053 - ID_B1 SINE B4 -76 216 129 5 1631 290 248 75 58 chr5 137164206 137164326 -15372933 - B1_Mur4 SINE Alu -28 122 1 5 1631 342 301 20 98 chr5 137164326 137164337 -15372922 - ID_B1 SINE B4 0 128 71 5 1631 829 221 85 137 chr5 137165568 137165635 -15371624 - B4 SINE B4 -2 290 221 5 1631 189 0 0 0 chr5 137165635 137165656 -15371603 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 5 1631 516 192 60 133 chr5 137165656 137165806 -15371453 - B1_Mus1 SINE Alu -8 140 2 5 1631 829 221 85 137 chr5 137165806 137166030 -15371229 - B4 SINE B4 -72 220 14 5 1631 939 251 9 40 chr5 137166464 137166692 -15370567 + ID_B1 SINE B4 1 221 -3 5 1631 581 158 25 16 chr5 137166701 137166823 -15370436 + Lx4B LINE L1 6936 7058 0 5 1631 447 19 0 0 chr5 137166899 137166951 -15370308 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1631 662 299 74 26 chr5 137166956 137167227 -15370032 - B4A SINE B4 -6 286 3 5 1631 333 0 0 0 chr5 137167451 137167488 -15369771 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1631 664 254 31 83 chr5 137167952 137168180 -15369079 + B4 SINE B4 1 216 -76 5 1631 514 278 0 68 chr5 137168193 137168355 -15368904 + RSINE1 SINE B4 12 162 -3 5 1631 1040 199 43 0 chr5 137168827 137169038 -15368221 - MTEb LTR MaLR -142 237 18 5 1631 1617 208 47 50 chr5 137169329 137169709 -15367550 - MTEb LTR MaLR 0 379 1 5 1631 183 282 58 23 chr5 137169781 137169868 -15367391 + MIR SINE MIR 52 141 -67 5 1631 180 0 0 0 chr5 137170356 137170376 -15366883 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 5 1631 355 309 10 0 chr5 137170423 137170520 -15366739 + PB1D10 SINE Alu 12 109 -8 6 1631 469 116 0 34 chr5 137170661 137170712 -15366547 + (TCC)n Simple_repeat Simple_repeat 3 53 0 6 1631 979 130 12 0 chr5 137170712 137170881 -15366378 + (TTC)n Simple_repeat Simple_repeat 1 171 0 6 1631 469 116 0 34 chr5 137170881 137170918 -15366341 + (TCC)n Simple_repeat Simple_repeat 1 35 0 6 1631 633 174 17 0 chr5 137172093 137172208 -15365051 + ZP3AR Satellite Satellite 10 126 -86 6 1631 761 87 0 0 chr5 137172945 137173060 -15364199 - ZP3AR Satellite Satellite -55 157 43 6 1631 286 329 0 0 chr5 137173244 137173320 -15363939 - MIRc SINE MIR -114 154 79 6 1631 790 125 7 59 chr5 137173570 137173723 -15363536 + ZP3AR Satellite Satellite 44 188 -24 6 1631 224 122 24 0 chr5 137174263 137174304 -15362955 + (GGA)n Simple_repeat Simple_repeat 1 42 0 6 1631 437 257 67 73 chr5 137174800 137174813 -15362446 - B4 SINE B4 -53 239 188 6 1631 1003 31 0 0 chr5 137174813 137174940 -15362319 - B1_Mus2 SINE Alu 0 147 21 6 1631 409 186 95 95 chr5 137174848 137174996 -15362263 - MT2B LTR ERVL -337 264 117 6 1631 437 257 67 73 chr5 137174940 137174964 -15362295 - B4 SINE B4 -53 187 77 6 1631 192 77 0 0 chr5 137175825 137175851 -15361408 + (CAGG)n Simple_repeat Simple_repeat 3 28 0 6 1631 322 245 117 10 chr5 137175853 137175956 -15361303 + B1F SINE Alu 28 141 -8 6 1631 1489 60 25 0 chr5 137175964 137176228 -15361031 + ZP3AR Satellite Satellite 1 270 0 6 1631 260 349 8 16 chr5 137177434 137177562 -15359697 + L1M5 LINE L1 5136 5262 -884 6 1631 397 278 23 53 chr5 137177637 137177770 -15359489 - RSINE1 SINE B4 -35 130 2 6 1631 244 313 59 24 chr5 137177837 137177922 -15359337 + PB1D10 SINE Alu 29 116 -1 6 1631 1617 28 0 1 chr5 137178566 137179139 -15358120 + ZP3AR Satellite Satellite 1 572 0 6 1631 443 253 0 0 chr5 137179139 137179222 -15358037 + ID4_ SINE ID 1 83 0 6 1631 201 290 28 74 chr5 137179239 137179347 -15357912 + L2b LINE L2 2993 3095 -280 6 1631 369 0 0 0 chr5 137179436 137179477 -15357782 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1631 734 196 71 12 chr5 137180609 137180779 -15356480 - ZP3AR Satellite Satellite -25 187 8 6 1631 1479 234 34 6 chr5 137181018 137181341 -15355918 + Lx5 LINE L1 6719 7050 0 6 1631 294 335 101 34 chr5 137181510 137181689 -15355570 - B3A SINE B2 0 198 8 6 1631 753 260 128 20 chr5 137183101 137183280 -15353979 + B4 SINE B4 15 214 -78 6 1631 468 0 0 0 chr5 137183280 137183332 -15353927 + (GA)n Simple_repeat Simple_repeat 2 53 0 6 1631 753 260 128 20 chr5 137183332 137183403 -15353856 + B4 SINE B4 215 292 0 6 1631 742 175 20 59 chr5 137183764 137183916 -15353343 - B1_Mur4 SINE Alu 0 150 5 6 1631 1267 205 48 185 chr5 137183920 137184357 -15352902 - MTE2a LTR MaLR -2 377 1 6 1631 355 295 13 76 chr5 137184747 137184905 -15352354 - ORR1E LTR MaLR -206 153 6 6 1631 207 0 0 0 chr5 137185157 137185180 -15352079 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1631 252 0 0 0 chr5 137185672 137185700 -15351559 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1631 432 0 0 0 chr5 137185700 137185747 -15351512 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1631 1128 274 0 115 chr5 137185788 137186118 -15351141 - B4 SINE B4 0 292 1 6 1631 278 50 25 0 chr5 137186340 137186380 -15350879 + (TTG)n Simple_repeat Simple_repeat 2 42 0 6 1631 626 284 58 6 chr5 137186413 137186569 -15350690 - RSINE1 SINE B4 0 165 2 6 1631 489 231 0 9 chr5 137187253 137187358 -15349901 - PB1D10 SINE Alu -13 104 1 6 1631 248 237 86 78 chr5 137187358 137187399 -15349860 - MT2B2 LTR ERVL -427 157 116 6 1631 265 254 42 0 chr5 137187482 137187553 -15349706 + ID SINE ID 3 76 -148 6 1631 534 276 19 25 chr5 137187643 137187760 -15349499 + B3A SINE B2 2 117 -81 6 1631 1242 107 0 0 chr5 137187760 137188155 -15349104 + (TG)n Simple_repeat Simple_repeat 1 395 0 6 1631 534 271 37 117 chr5 137188155 137188203 -15349056 + B3A SINE B2 112 158 -37 6 1631 270 0 0 0 chr5 137188203 137188233 -15349026 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1631 322 271 37 117 chr5 137188233 137188249 -15349010 + B2_Mm2 SINE B2 159 174 -21 6 1631 725 182 105 8 chr5 137188251 137188384 -15348875 - B1_Mm SINE Alu 0 147 2 6 1631 756 173 0 0 chr5 137188696 137188942 -15348317 + (CA)n Simple_repeat Simple_repeat 1 246 0 6 1631 300 53 0 0 chr5 137189193 137189231 -15348028 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 6 1631 369 0 0 0 chr5 137189351 137189392 -15347867 + (TG)n Simple_repeat Simple_repeat 1 41 0 6 1631 234 98 49 0 chr5 137189408 137189449 -15347810 - RSINE1 SINE B4 -40 125 83 6 1631 463 340 30 15 chr5 137189475 137189678 -15347581 - B4A SINE B4 -62 230 25 6 1631 233 328 49 8 chr5 137191587 137191710 -15345549 + L2c LINE L2 2997 3124 -263 6 1631 231 217 0 0 chr5 137192627 137192687 -15344572 + GA-rich Low_complexity Low_complexity 2 61 0 6 1631 795 66 25 8 chr5 137192800 137192913 -15344346 + ZP3AR Satellite Satellite 36 151 -61 6 1631 375 264 0 0 chr5 137192913 137192985 -15344274 + ID2 SINE ID 1 72 -11 6 1631 233 208 14 0 chr5 137193712 137193784 -15343475 + CT-rich Low_complexity Low_complexity 1 73 0 6 1631 1259 79 0 6 chr5 137193786 137193964 -15343295 + (TCTCC)n Simple_repeat Simple_repeat 1 177 0 6 1631 814 230 92 10 chr5 137193967 137194173 -15343086 - ID_B1 SINE B4 -1 223 1 6 1631 254 312 79 16 chr5 137194335 137194462 -15342797 + MIRb SINE MIR 119 253 -15 6 1631 512 130 0 11 chr5 137194791 137194884 -15342375 + (TG)n Simple_repeat Simple_repeat 1 92 0 6 1631 432 184 123 44 chr5 137194997 137195111 -15342148 - B4 SINE B4 -90 202 80 6 1631 351 0 0 0 chr5 137195119 137195158 -15342101 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 6 1631 944 198 0 6 chr5 137195163 137195326 -15341933 - RSINE1 SINE B4 0 165 4 6 1631 348 24 0 0 chr5 137195600 137195641 -15341618 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 6 1631 400 269 16 40 chr5 137195696 137195820 -15341439 - B3A SINE B2 -6 192 72 6 1631 474 65 0 0 chr5 137195840 137195902 -15341357 + (TCCC)n Simple_repeat Simple_repeat 1 62 0 6 1631 317 357 12 31 chr5 137196038 137196112 -15341147 - MER58A DNA MER1_type -15 209 136 6 1631 2732 58 26 3 chr5 137196112 137196458 -15340801 - IAPEY2_LTR LTR ERVK -3 354 1 6 1631 317 357 12 31 chr5 137196458 137196545 -15340714 - MER58A DNA MER1_type -89 135 51 6 1631 300 273 40 24 chr5 137196562 137196686 -15340573 + L1MB5 LINE L1 23 148 -6394 6 1631 269 26 0 26 chr5 137196692 137196731 -15340528 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 6 1631 621 174 27 9 chr5 137196734 137196844 -15340415 - PB1D9 SINE Alu -6 114 3 6 1631 527 355 48 63 chr5 137196874 137197142 -15340117 + B4A SINE B4 2 265 -27 6 1631 315 0 0 0 chr5 137197142 137197177 -15340082 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1631 691 275 136 38 chr5 137197270 137197462 -15339797 - B4A SINE B4 0 292 97 6 1631 261 0 0 0 chr5 137197462 137197491 -15339768 + (CA)n Simple_repeat Simple_repeat 1 29 0 6 1631 691 275 136 38 chr5 137197491 137197563 -15339696 - B4A SINE B4 -196 96 2 6 1631 325 335 33 44 chr5 137197669 137197850 -15339409 + L1MB5 LINE L1 281 459 -6083 6 1631 1924 181 55 15 chr5 137198180 137198578 -15338681 + MTD LTR MaLR 4 417 -2 6 1631 244 222 0 0 chr5 137198578 137198621 -15338638 - B2_Mm2 SINE B2 -151 44 2 6 1631 769 291 54 29 chr5 137198657 137199007 -15338252 + L1MB5 LINE L1 5460 5818 -826 6 1631 274 289 230 0 chr5 137199020 137199155 -15338104 - L1M4 LINE L1 -1026 5120 4955 6 1631 482 218 182 62 chr5 137199291 137199467 -15337792 + B3A SINE B2 1 197 -1 6 1631 458 316 77 82 chr5 137199602 137199968 -15337291 - ORR1D2 LTR MaLR 0 370 7 6 1631 494 293 54 53 chr5 137200026 137200215 -15337044 + B3A SINE B2 15 204 -12 6 1631 519 294 4 18 chr5 137200217 137200424 -15336835 + L1MB5 LINE L1 6165 6369 -1914 6 1631 27 0 0 0 chr5 137200454 137200481 -15336778 + AT_rich Low_complexity Low_complexity 1 27 0 6 1631 405 252 0 0 chr5 137200502 137200601 -15336658 + L1MB5 LINE L1 6375 6473 -209 6 1631 569 210 104 42 chr5 137200722 137200866 -15336393 - RSINE1 SINE B4 -12 153 1 6 1631 321 255 136 36 chr5 137200867 137200977 -15336282 + MLT1A1 LTR MaLR 1 121 -287 6 1631 318 255 42 37 chr5 137201028 137201118 -15336141 - PB1D10 SINE Alu -56 93 1 6 1631 587 204 20 34 chr5 137201260 137201407 -15335852 + B3A SINE B2 17 161 -37 6 1631 387 252 17 42 chr5 137201481 137201601 -15335658 - PB1D10 SINE Alu 0 117 1 6 1631 976 86 0 0 chr5 137201622 137201761 -15335498 + B2_Mm2 SINE B2 1 139 -56 6 1631 21 0 0 0 chr5 137201786 137201807 -15335452 + AT_rich Low_complexity Low_complexity 1 21 0 6 1631 1095 88 13 7 chr5 137201820 137201969 -15335290 - B1_Mur4 SINE Alu 0 150 1 6 1631 300 162 116 14 chr5 137202070 137202139 -15335120 - ID2 SINE ID -6 77 2 6 1631 284 379 0 12 chr5 137202159 137202322 -15334937 - L1M5 LINE L1 -1120 5026 4866 6 1631 1705 21 0 0 chr5 137202380 137202569 -15334690 + B2_Mm1a SINE B2 1 189 -4 6 1631 795 237 115 122 chr5 137202657 137202745 -15334514 + B4 SINE B4 7 80 -212 6 1631 1258 41 0 0 chr5 137202745 137202891 -15334368 + B1_Mus2 SINE Alu 2 147 0 6 1631 795 237 115 122 chr5 137202891 137203090 -15334169 + B4 SINE B4 81 292 0 6 1631 744 101 11 53 chr5 137203090 137203278 -15333981 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1631 429 252 31 25 chr5 137203282 137203445 -15333814 + (CATATA)n Simple_repeat Simple_repeat 6 169 0 6 1631 561 127 53 18 chr5 137203445 137203614 -15333645 + (CA)n Simple_repeat Simple_repeat 1 175 0 6 1631 325 184 78 39 chr5 137203614 137203716 -15333543 + HAL1-3A_ME LINE L1 1976 2081 -777 6 1631 705 264 52 0 chr5 137203737 137203892 -15333367 + RSINE1 SINE B4 1 163 -2 6 1631 1402 207 133 40 chr5 137204198 137204479 -15332780 + MTEb LTR MaLR 1 316 -63 6 1631 1454 87 0 5 chr5 137204479 137204665 -15332594 - B2_Mm2 SINE B2 -10 185 1 6 1631 1402 207 133 40 chr5 137204665 137204730 -15332529 + MTEb LTR MaLR 317 379 0 6 1631 320 267 39 62 chr5 137204889 137205017 -15332242 + RMER15 LTR ERVL 6 130 -445 6 1631 714 264 198 8 chr5 137205054 137205306 -15331953 + RMER15 LTR ERVL 273 572 -3 6 1631 302 329 56 43 chr5 137205306 137205466 -15331793 + MLT1B LTR MaLR 193 354 -20 7 1631 1432 194 105 55 chr5 137205660 137206021 -15331238 - MTE2a LTR MaLR 0 379 1 7 1631 4482 12 0 24 chr5 137206219 137206724 -15330535 - MT2_Mm LTR ERVL 0 493 1 7 1631 297 0 0 0 chr5 137206724 137206762 -15330497 - MERVL-int LTR ERVL 0 5485 5448 7 1631 374 167 46 35 chr5 137206762 137206849 -15330410 - ORR1A3-int LTR MaLR -1323 640 553 7 1631 45915 15 6 0 chr5 137206849 137212175 -15325084 - MERVL-int LTR ERVL -125 5360 1 7 1631 3723 16 117 26 chr5 137212175 137212627 -15324632 - MT2_Mm LTR ERVL 0 493 1 7 1631 223 278 75 32 chr5 137213416 137213431 -15323828 - PB1 SINE Alu 0 127 113 7 1631 1863 77 53 141 chr5 137213431 137213792 -15323467 + ORR1A4 LTR MaLR 1 329 0 7 1631 315 213 62 2 chr5 137213792 137213881 -15323378 - PB1D10 SINE Alu -15 112 10 7 1631 322 303 37 29 chr5 137213881 137214017 -15323242 + MER74B LTR ERVL 174 310 -312 7 1631 489 270 157 7 chr5 137214015 137214168 -15323091 - ID_B1 SINE B4 -33 191 16 7 1631 506 217 26 9 chr5 137214233 137214349 -15322910 + B1F SINE Alu 32 149 0 7 1631 244 260 154 96 chr5 137215564 137215700 -15321559 + LTR84a LTR ERVL 429 572 -185 7 1631 356 246 41 110 chr5 137216303 137216449 -15320810 - RSINE1 SINE B4 -2 163 28 7 1631 593 200 61 0 chr5 137216792 137216907 -15320352 + B1_Mur1 SINE Alu 7 128 -21 7 1631 251 293 0 0 chr5 137217021 137217079 -15320180 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1631 590 255 24 44 chr5 137217079 137217284 -15319975 - B3 SINE B2 -15 201 1 7 1631 633 248 21 7 chr5 137217316 137217458 -15319801 - RSINE1 SINE B4 -21 144 1 7 1631 234 287 11 44 chr5 137218544 137218635 -15318624 + MIR SINE MIR 175 262 0 7 1631 353 22 0 21 chr5 137219169 137219216 -15318043 + (TTCA)n Simple_repeat Simple_repeat 2 47 0 7 1631 387 328 6 22 chr5 137219227 137219479 -15317780 + (TTCA)n Simple_repeat Simple_repeat 1 247 0 7 1631 1903 163 59 21 chr5 137220458 137220847 -15316412 + MTD LTR MaLR 12 405 -14 7 1631 624 310 43 31 chr5 137220937 137221260 -15315999 + L1M4 LINE L1 4960 5286 -860 7 1631 272 215 9 27 chr5 137221893 137222003 -15315256 + CT-rich Low_complexity Low_complexity 3 110 0 7 1631 195 42 0 0 chr5 137222038 137222062 -15315197 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1631 360 300 0 0 chr5 137222062 137222142 -15315117 - PB1D10 SINE Alu -11 106 27 7 1631 362 275 91 23 chr5 137223301 137223476 -15313783 + MIR SINE MIR 69 255 -7 7 1631 301 319 87 6 chr5 137223502 137223663 -15313596 + MIRb SINE MIR 29 202 -66 7 1631 207 290 75 57 chr5 137224958 137225064 -15312195 + MIRm SINE MIR 47 154 -122 7 1631 1134 204 181 8 chr5 137225660 137225961 -15311298 + MTD LTR MaLR 67 404 -15 7 1631 379 203 0 0 chr5 137226521 137226590 -15310669 - ID4_ SINE ID -14 69 1 7 1631 1437 60 0 0 chr5 137226590 137226790 -15310469 - ZP3AR Satellite Satellite -11 201 2 7 1631 823 214 6 6 chr5 137227305 137227474 -15309785 + ID_B1 SINE B4 55 223 -1 7 1631 1171 246 54 7 chr5 137227751 137228029 -15309230 + B4A SINE B4 2 292 0 7 1631 279 264 0 0 chr5 137228029 137228120 -15309139 + (CA)n Simple_repeat Simple_repeat 1 91 0 7 1631 633 239 0 0 chr5 137228131 137228311 -15308948 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1631 685 188 83 0 chr5 137228823 137228956 -15308303 + RSINE1 SINE B4 2 145 -20 7 1631 323 247 0 90 chr5 137229020 137229109 -15308150 - ID4_ SINE ID -2 81 1 7 1631 1347 84 0 3 chr5 137229109 137229374 -15307885 - ZP3AR Satellite Satellite -11 264 1 7 1631 341 336 0 42 chr5 137229398 137229516 -15307743 - B1F SINE Alu 0 149 37 7 1631 189 278 141 22 chr5 137230258 137230350 -15306909 - MIRc SINE MIR -123 145 43 7 1631 1495 32 8 0 chr5 137230973 137231222 -15306037 - ZP3AR Satellite Satellite -25 250 1 7 1631 386 235 58 25 chr5 137231525 137231644 -15305615 + PB1D10 SINE Alu 14 127 -22 7 1631 488 240 105 49 chr5 137232042 137232204 -15305055 + B4A SINE B4 77 247 -45 7 1631 243 88 0 0 chr5 137232281 137232315 -15304944 + (CACCAT)n Simple_repeat Simple_repeat 3 36 0 7 203 1038 270 125 25 chr5 137232346 137232714 -15304545 + MTD LTR MaLR 1 405 -14 7 1632 278 269 15 0 chr5 137232852 137232919 -15304340 + PB1D10 SINE Alu 1 68 -49 7 1632 262 342 47 81 chr5 137232916 137232991 -15304268 - B4 SINE B4 -126 166 1 7 1632 323 299 10 0 chr5 137232991 137233088 -15304171 - BC1_Mm scRNA scRNA -54 98 1 7 1632 623 178 30 15 chr5 137233011 137233142 -15304117 - ZP3AR Satellite Satellite -38 174 42 7 1632 413 329 21 42 chr5 137233149 137233292 -15303967 - B1F1 SINE Alu -9 140 1 7 1632 503 212 197 0 chr5 137233712 137233849 -15303410 + L1MA4 LINE L1 5762 5925 -375 7 1632 869 215 0 58 chr5 137233945 137234118 -15303141 + RSINE1 SINE B4 3 165 0 7 1632 300 195 48 226 chr5 137234167 137234243 -15303016 + B1F SINE Alu 1 62 -87 7 1632 1538 26 10 78 chr5 137234243 137234358 -15302901 + B2_Mm1a SINE B2 2 116 -77 7 1632 1654 26 16 0 chr5 137234358 137234547 -15302712 + B2_Mm1a SINE B2 2 193 0 7 1632 1538 26 10 78 chr5 137234547 137234637 -15302622 + B2_Mm1a SINE B2 117 193 0 7 1632 346 328 16 24 chr5 137234637 137234683 -15302576 + ID_B1 SINE B4 157 203 -21 7 1632 300 195 48 226 chr5 137234683 137234706 -15302553 + B1F SINE Alu 63 120 -29 7 1632 333 0 0 0 chr5 137234716 137234753 -15302506 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1632 1053 118 0 0 chr5 137235126 137235304 -15301955 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 7 1632 874 185 169 0 chr5 137235580 137235764 -15301495 - B3 SINE B2 0 216 2 7 1632 303 299 30 45 chr5 137236123 137236256 -15301003 - MIRb SINE MIR -97 171 41 7 1632 369 0 0 0 chr5 137236536 137236577 -15300682 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1632 395 244 64 36 chr5 137236981 137237121 -15300138 + RSINE1 SINE B4 3 146 -19 7 1632 267 31 0 0 chr5 137237141 137237173 -15300086 + (CG)n Simple_repeat Simple_repeat 2 33 0 7 1632 405 0 0 0 chr5 137237173 137237217 -15300042 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1632 1135 197 56 5 chr5 137237513 137237727 -15299532 - URR1B DNA MER1_type 0 225 1 7 1632 813 68 85 0 chr5 137238184 137238302 -15298957 - B2_Mm2 SINE B2 -67 128 1 7 1632 342 256 393 0 chr5 137239191 137239308 -15297951 - RSINE1 SINE B4 0 165 3 7 1632 428 35 17 0 chr5 137239320 137239378 -15297881 + (TATG)n Simple_repeat Simple_repeat 2 60 0 7 1632 272 225 93 70 chr5 137239390 137239430 -15297829 - B1F SINE Alu -5 144 108 7 1632 537 58 0 0 chr5 137239430 137239499 -15297760 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 7 1632 272 225 93 70 chr5 137239499 137239544 -15297715 - B1F SINE Alu -42 107 57 7 1632 1318 201 19 8 chr5 137239676 137239937 -15297322 - B4 SINE B4 -14 278 15 7 1632 1381 121 140 0 chr5 137240371 137240635 -15296624 + RMER15 LTR ERVL 272 572 -3 7 1632 601 251 101 11 chr5 137241693 137241882 -15295377 + ID_B1 SINE B4 18 223 -1 7 1632 472 292 8 15 chr5 137241914 137242046 -15295213 + B1F SINE Alu 7 137 -12 7 1632 495 45 0 0 chr5 137242048 137242114 -15295145 + (TG)n Simple_repeat Simple_repeat 2 67 0 7 1632 258 125 0 0 chr5 137242114 137242162 -15295097 + (TC)n Simple_repeat Simple_repeat 2 49 0 7 1632 486 61 0 0 chr5 137242162 137242228 -15295031 + (CA)n Simple_repeat Simple_repeat 1 66 0 7 1632 182 196 137 0 chr5 137242267 137242318 -15294941 + L2c LINE L2 3243 3300 -87 7 1632 239 224 60 0 chr5 137242727 137242794 -15294465 + PB1D10 SINE Alu 40 110 -7 7 1632 308 250 13 13 chr5 137242799 137242875 -15294384 + B4A SINE B4 21 96 -196 7 1632 527 267 8 0 chr5 137242875 137242995 -15294264 + RSINE1 SINE B4 3 123 -42 7 1632 207 0 0 0 chr5 137242995 137243018 -15294241 + (TA)n Simple_repeat Simple_repeat 1 23 0 7 1632 472 267 0 32 chr5 137243083 137243207 -15294052 + B4A SINE B4 167 286 -6 7 1632 186 171 0 0 chr5 137243712 137243753 -15293506 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1632 681 246 57 23 chr5 137243758 137243933 -15293326 - B3A SINE B2 -16 182 2 7 1632 1589 88 0 36 chr5 137244286 137244720 -15292539 - ZP3AR Satellite Satellite -13 418 1 7 1632 541 222 29 36 chr5 137244725 137244865 -15292394 - B1F1 SINE Alu 0 149 11 7 1632 466 321 6 40 chr5 137244731 137244906 -15292353 - ID_B1 SINE B4 -2 222 54 7 1632 238 335 44 89 chr5 137244773 137244953 -15292306 - MT2B2 LTR ERVL -326 258 87 7 1632 486 0 0 0 chr5 137245060 137245114 -15292145 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1632 233 224 50 41 chr5 137245982 137246103 -15291156 + (CCCA)n Simple_repeat Simple_repeat 1 122 0 7 1632 205 353 0 29 chr5 137246179 137246316 -15290943 + C-rich Low_complexity Low_complexity 6 138 0 7 1632 203 73 73 0 chr5 137246544 137246599 -15290660 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 7 1632 468 217 189 16 chr5 137246602 137246724 -15290535 - ID_B1 SINE B4 0 224 82 7 1632 279 179 73 0 chr5 137247519 137247607 -15289652 + B4 SINE B4 1 102 -190 7 1632 367 262 44 53 chr5 137247595 137247708 -15289551 + B4A SINE B4 118 229 -63 7 1632 26 0 0 0 chr5 137247875 137247901 -15289358 + GC_rich Low_complexity Low_complexity 1 26 0 7 1632 492 250 138 0 chr5 137247921 137248037 -15289222 + B1F1 SINE Alu 2 133 -16 7 1632 181 148 0 20 chr5 137248068 137248113 -15289146 + MIR3 SINE MIR 117 159 -49 7 1632 648 91 0 26 chr5 137248617 137248730 -15288529 + (TCC)n Simple_repeat Simple_repeat 1 110 0 7 1632 716 196 63 38 chr5 137250224 137250383 -15286876 - RSINE1 SINE B4 0 165 3 7 1632 1136 262 49 46 chr5 137250390 137250718 -15286541 + MTE2a LTR MaLR 42 370 -9 7 1632 513 322 45 40 chr5 137250816 137251194 -15286065 + HAL1 LINE L1 1370 1749 -758 7 1632 457 248 242 0 chr5 137251213 137251366 -15285893 - ID_B1 SINE B4 -34 190 1 7 1632 282 282 39 0 chr5 137251440 137251518 -15285741 - ID4_ SINE ID -2 81 1 7 1632 228 161 16 31 chr5 137251843 137251907 -15285352 + CT-rich Low_complexity Low_complexity 1 63 0 8 1632 447 249 18 3 chr5 137251910 137252024 -15285235 - B1F2 SINE Alu -1 148 36 8 1632 280 286 48 104 chr5 137252054 137252179 -15285080 - B2_Mm2 SINE B2 -31 164 47 8 1632 787 174 143 10 chr5 137252177 137252423 -15284836 + MTD LTR MaLR 127 419 0 8 1632 761 284 38 5 chr5 137252460 137252669 -15284590 - ID_B1 SINE B4 -2 222 7 8 1632 289 276 74 89 chr5 137252865 137253000 -15284259 + B1F SINE Alu 10 142 -7 8 1632 426 206 65 0 chr5 137252911 137253003 -15284256 + ID_B1 SINE B4 123 220 -4 8 1632 3058 108 9 14 chr5 137253050 137253473 -15283786 - MTC LTR MaLR 0 421 1 8 1632 828 279 18 27 chr5 137253478 137253519 -15283740 + ID SINE ID 1 41 -183 8 1632 2374 103 19 3 chr5 137253519 137253840 -15283419 + ORR1A3 LTR MaLR 1 326 0 8 1632 828 279 18 27 chr5 137253840 137254023 -15283236 + ID_B1 SINE B4 42 223 -1 8 1632 301 302 131 8 chr5 137254031 137254161 -15283098 + B4A SINE B4 1 146 -146 8 1632 735 219 46 0 chr5 137254230 137254381 -15282878 - RSINE1 SINE B4 -5 160 3 8 1632 338 309 56 9 chr5 137254555 137254663 -15282596 + B4 SINE B4 11 123 -169 8 1632 320 272 12 24 chr5 137254690 137254773 -15282486 + RSINE1 SINE B4 78 159 -6 8 1632 501 47 0 0 chr5 137254774 137254838 -15282421 + (GA)n Simple_repeat Simple_repeat 1 64 0 8 1632 841 82 0 43 chr5 137254933 137255046 -15282213 + ZP3AR Satellite Satellite 36 148 -64 8 1632 579 240 114 137 chr5 137255046 137255345 -15281914 + B4 SINE B4 1 292 0 8 1632 841 82 0 43 chr5 137255345 137255371 -15281888 + ZP3AR Satellite Satellite 149 169 -43 8 1632 1297 180 106 140 chr5 137255385 137255799 -15281460 - MTD LTR MaLR -2 417 18 8 1632 227 264 0 0 chr5 137255824 137255877 -15281382 + RSINE1 SINE B4 81 133 -32 8 1632 212 79 0 50 chr5 137255880 137255920 -15281339 + (CCCCCA)n Simple_repeat Simple_repeat 4 41 0 8 1632 608 264 40 11 chr5 137256412 137256588 -15280671 + B3A SINE B2 1 181 -17 8 1632 236 319 14 0 chr5 137256620 137256692 -15280567 + B4A SINE B4 217 289 -3 8 1632 419 293 0 20 chr5 137256937 137257038 -15280221 + PB1D10 SINE Alu 18 116 -1 8 1632 282 143 0 0 chr5 137257107 137257156 -15280103 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1632 694 286 6 12 chr5 137257159 137257332 -15279927 - B4 SINE B4 0 292 121 8 1632 411 275 44 38 chr5 137257346 137257505 -15279754 + RMER15 LTR ERVL 1 160 -415 8 1632 417 240 0 20 chr5 137257518 137257616 -15279643 + RMER15 LTR ERVL 298 393 -182 8 1632 462 286 0 18 chr5 137257834 137257948 -15279311 - PB1D10 SINE Alu 0 117 6 8 1632 658 264 24 0 chr5 137257862 137258029 -15279230 - ID_B1 SINE B4 -52 172 2 8 1632 298 159 14 14 chr5 137258265 137258335 -15278924 + CT-rich Low_complexity Low_complexity 1 70 0 8 1632 391 327 72 47 chr5 137258581 137258857 -15278402 + B4A SINE B4 2 284 -8 8 1632 512 231 10 0 chr5 137258974 137259078 -15278181 - PB1D10 SINE Alu -12 105 1 8 1632 421 205 9 9 chr5 137259084 137259197 -15278062 + CT-rich Low_complexity Low_complexity 2 114 0 8 1632 180 77 0 0 chr5 137259209 137259235 -15278024 + (TTA)n Simple_repeat Simple_repeat 3 28 0 8 1632 729 279 44 0 chr5 137259236 137259440 -15277819 - ID_B1 SINE B4 -7 217 5 8 1632 190 299 126 79 chr5 137259608 137259735 -15277524 - MIR3 SINE MIR -68 140 8 8 1632 335 181 0 14 chr5 137259747 137259820 -15277439 + CT-rich Low_complexity Low_complexity 4 75 0 8 1632 243 175 0 0 chr5 137259876 137259916 -15277343 - B4 SINE B4 -4 288 249 8 1632 261 0 0 0 chr5 137259917 137259946 -15277313 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1632 466 285 89 0 chr5 137259956 137260079 -15277180 - RSINE1 SINE B4 -28 137 4 8 1632 722 299 18 22 chr5 137260079 137260306 -15276953 - B4A SINE B4 -65 227 2 8 1632 242 56 0 27 chr5 137260803 137260840 -15276419 + (CCCCCA)n Simple_repeat Simple_repeat 1 36 0 8 1632 538 181 79 43 chr5 137261012 137261151 -15276108 - RSINE1 SINE B4 -19 146 3 8 1632 927 261 61 102 chr5 137261251 137261504 -15275755 - MTE2a LTR MaLR -2 377 118 8 1632 753 12 0 0 chr5 137261504 137261590 -15275669 + (TTC)n Simple_repeat Simple_repeat 2 87 0 8 1632 1161 83 0 0 chr5 137261590 137261734 -15275525 - B1_Mus1 SINE Alu -3 145 2 8 1632 927 261 61 102 chr5 137261734 137261872 -15275387 - MTE2a LTR MaLR -262 117 2 8 1632 330 243 37 46 chr5 137261912 137262020 -15275239 + PB1D7 SINE Alu 14 120 0 8 1632 414 0 0 0 chr5 137262074 137262120 -15275139 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1632 345 231 0 150 chr5 137262373 137262467 -15274792 - B4A SINE B4 -2 290 207 8 1632 671 214 84 42 chr5 137262467 137262657 -15274602 - B3A SINE B2 0 198 1 8 1632 345 231 0 150 chr5 137262657 137262689 -15274570 - B4A SINE B4 -86 206 183 8 1632 470 324 7 0 chr5 137262696 137262841 -15274418 + B1F1 SINE Alu 1 146 -3 8 1632 266 293 101 37 chr5 137262843 137263031 -15274228 + L1M4 LINE L1 5123 5322 -824 8 1632 378 0 0 0 chr5 137263040 137263082 -15274177 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1632 554 267 15 0 chr5 137263086 137263217 -15274042 - B3A SINE B2 -64 134 2 8 1632 333 0 0 0 chr5 137263330 137263367 -15273892 + (TC)n Simple_repeat Simple_repeat 1 37 0 8 1632 324 0 0 0 chr5 137263367 137263402 -15273857 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1632 1203 209 105 23 chr5 137264346 137264689 -15272570 + MTD LTR MaLR 10 380 -39 8 1632 221 0 35 0 chr5 137264989 137265018 -15272241 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 8 1632 238 220 0 20 chr5 137265092 137265143 -15272116 + (TATG)n Simple_repeat Simple_repeat 1 50 0 8 1632 793 232 107 81 chr5 137265143 137265415 -15271844 - B4 SINE B4 0 292 14 8 1632 335 242 198 0 chr5 137265625 137265716 -15271543 + PB1D10 SINE Alu 1 109 -8 8 1632 626 49 29 19 chr5 137265915 137266019 -15271240 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 8 1632 323 259 16 74 chr5 137266258 137266379 -15270880 - MIR SINE MIR -29 233 120 8 1632 552 290 98 49 chr5 137266456 137266659 -15270600 - ID_B1 SINE B4 0 224 12 8 1632 200 411 0 0 chr5 137266831 137266921 -15270338 + MER91B DNA Tip100 74 163 -27 8 1632 812 229 131 5 chr5 137267207 137267405 -15269854 - ID_B1 SINE B4 0 224 2 8 1632 706 276 37 65 chr5 137267671 137267891 -15269368 - B4 SINE B4 0 292 89 8 1632 230 318 16 0 chr5 137267901 137267964 -15269295 + (TG)n Simple_repeat Simple_repeat 2 65 0 8 1632 333 0 0 0 chr5 137268014 137268051 -15269208 + (TC)n Simple_repeat Simple_repeat 1 37 0 8 1632 573 266 111 19 chr5 137268053 137268260 -15268999 - B4A SINE B4 -66 226 1 8 1632 254 197 33 0 chr5 137269019 137269080 -15268179 + B4 SINE B4 31 93 -199 8 1632 222 276 10 139 chr5 137269120 137269221 -15268038 + RSINE1 SINE B4 78 165 0 8 1632 223 224 0 26 chr5 137269242 137269320 -15267939 + (CA)n Simple_repeat Simple_repeat 1 76 0 8 1632 669 250 25 12 chr5 137269486 137269648 -15267611 + RSINE1 SINE B4 2 165 0 8 1632 336 102 0 0 chr5 137269657 137269706 -15267553 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 8 1632 973 238 20 0 chr5 137269788 137269990 -15267269 - B3 SINE B2 -10 206 1 8 1632 529 319 49 12 chr5 137270063 137270225 -15267034 - B4 SINE B4 -1 291 124 8 1632 501 219 18 0 chr5 137270694 137270928 -15266331 + (TGGG)n Simple_repeat Simple_repeat 1 238 0 8 1632 304 226 32 0 chr5 137270933 137270995 -15266264 - ID4_ SINE ID -3 80 17 8 1632 242 268 0 40 chr5 137271012 137271086 -15266173 + B1F SINE Alu 79 149 0 8 1632 475 45 0 0 chr5 137271117 137271183 -15266076 + ZP3AR Satellite Satellite 3 68 -144 8 1632 332 71 18 0 chr5 137271208 137271264 -15265995 + (CAAT)n Simple_repeat Simple_repeat 1 57 0 8 1632 650 271 0 48 chr5 137271582 137271749 -15265510 + RSINE1 SINE B4 4 162 -3 8 1632 322 17 0 128 chr5 137272481 137272614 -15264645 + (GGGAGA)n Simple_repeat Simple_repeat 5 120 0 8 1632 190 238 0 47 chr5 137272642 137272770 -15264489 + GA-rich Low_complexity Low_complexity 2 123 0 8 1632 378 258 0 19 chr5 137272785 137272947 -15264312 + GA-rich Low_complexity Low_complexity 3 161 0 8 1632 430 231 9 88 chr5 137273249 137273363 -15263896 - PB1D10 SINE Alu -12 105 1 8 1632 1298 218 146 15 chr5 137273591 137273926 -15263333 - MTE2b LTR MaLR 0 379 1 8 1632 262 242 30 0 chr5 137274092 137274158 -15263101 + RSINE1 SINE B4 78 145 -20 8 1632 360 43 0 0 chr5 137274158 137274204 -15263055 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1632 242 164 54 18 chr5 137274283 137274339 -15262920 + CT-rich Low_complexity Low_complexity 2 59 0 8 1632 711 237 17 34 chr5 137274349 137274528 -15262731 - B3A SINE B2 -15 183 8 8 1632 1273 235 129 29 chr5 137274639 137275020 -15262239 + MTD LTR MaLR 1 419 0 8 1632 638 261 124 38 chr5 137275667 137275934 -15261325 - B4 SINE B4 -1 291 2 8 1632 1734 141 84 22 chr5 137276274 137276702 -15260557 + RMER17C LTR ERVK 20 439 -519 8 1632 185 167 0 111 chr5 137276710 137276764 -15260495 - MIR SINE MIR -118 144 97 8 1632 1234 163 4 44 chr5 137276928 137277153 -15260106 + B3 SINE B2 1 216 0 8 1632 250 213 0 0 chr5 137277245 137277292 -15259967 + RMER15 LTR ERVL 84 130 -445 8 1632 354 235 35 0 chr5 137277546 137277631 -15259628 - B3A SINE B2 -47 151 64 8 1632 465 19 0 0 chr5 137277852 137277906 -15259353 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1632 676 232 25 70 chr5 137278122 137278321 -15258938 + B4A SINE B4 1 190 -102 8 1632 1060 242 30 15 chr5 137279065 137279333 -15257926 + B4 SINE B4 6 277 -15 8 1632 461 206 72 0 chr5 137279463 137279560 -15257699 + B1F SINE Alu 33 136 -13 8 1632 201 74 0 0 chr5 137280040 137280067 -15257192 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 9 1632 711 240 13 0 chr5 137280104 137280258 -15257001 - B3A SINE B2 -42 156 1 9 1632 192 285 19 42 chr5 137280260 137280342 -15256917 + MIRb SINE MIR 97 179 -89 9 1632 336 24 0 0 chr5 137280454 137280495 -15256764 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1632 633 97 0 0 chr5 137280490 137280593 -15256666 + (TC)n Simple_repeat Simple_repeat 2 104 0 9 1632 1124 210 18 51 chr5 137280669 137280945 -15256314 - B4 SINE B4 -19 273 7 9 1632 232 289 89 0 chr5 137281276 137281366 -15255893 + ID_B1 SINE B4 125 222 -2 9 1632 845 231 15 10 chr5 137281389 137281586 -15255673 + B4 SINE B4 31 228 -64 9 1632 664 241 30 60 chr5 137281593 137281792 -15255467 + B3A SINE B2 6 198 0 9 1632 401 333 35 42 chr5 137281828 137282116 -15255143 + B4A SINE B4 1 286 -6 9 1632 291 212 0 8 chr5 137282130 137282256 -15255003 + (CA)n Simple_repeat Simple_repeat 1 124 0 9 1632 402 301 96 86 chr5 137282314 137282638 -15254621 - LTR37A LTR ERV1 -59 367 41 9 1632 305 272 87 0 chr5 137282789 137282881 -15254378 + B3A SINE B2 4 103 -95 9 1632 1008 94 0 7 chr5 137282883 137283023 -15254236 + B1_Mus2 SINE Alu 2 140 -7 9 1632 498 309 99 33 chr5 137283043 137283254 -15254005 + B4 SINE B4 68 292 0 9 1632 221 190 17 0 chr5 137283435 137283493 -15253766 + T-rich Low_complexity Low_complexity 3 61 0 9 1632 865 134 14 14 chr5 137283495 137283639 -15253620 - B1_Mur4 SINE Alu 0 150 7 9 1632 232 240 0 65 chr5 137283558 137283665 -15253594 - ORR1B1-int LTR MaLR -776 733 634 9 1632 658 248 70 65 chr5 137283758 137283987 -15253272 + B4 SINE B4 1 230 -62 9 1632 458 262 25 99 chr5 137284045 137284096 -15253163 + B3A SINE B2 48 97 -101 9 1632 1705 127 144 74 chr5 137284096 137284463 -15252796 - ORR1B1 LTR MaLR -1 393 1 9 1632 458 262 25 99 chr5 137284463 137284572 -15252687 + B3A SINE B2 98 196 -2 9 1632 275 220 0 0 chr5 137284675 137284734 -15252525 - B4 SINE B4 -212 80 22 9 1632 306 233 0 0 chr5 137284684 137284744 -15252515 - ID4_ SINE ID -13 70 11 9 1632 522 118 0 0 chr5 137285367 137285469 -15251790 + (TC)n Simple_repeat Simple_repeat 1 102 0 9 1632 647 236 93 31 chr5 137285515 137285773 -15251486 + B4A SINE B4 4 277 -15 9 1632 645 80 0 0 chr5 137285919 137286007 -15251252 + (TCTCC)n Simple_repeat Simple_repeat 4 91 0 9 1632 266 149 38 38 chr5 137286019 137286124 -15251135 + (TCTCTG)n Simple_repeat Simple_repeat 4 108 0 9 1632 551 40 0 13 chr5 137286126 137286201 -15251058 + (TC)n Simple_repeat Simple_repeat 1 74 0 9 1632 627 260 97 34 chr5 137286219 137286486 -15250773 - B4A SINE B4 -7 285 2 9 1632 1356 156 5 0 chr5 137287345 137287569 -15249690 + URR1B DNA MER1_type 1 225 0 9 1632 325 290 86 0 chr5 137288068 137288161 -15249098 + MTEb LTR MaLR 3 103 -276 9 1632 842 179 45 6 chr5 137288161 137288318 -15248941 + RSINE1 SINE B4 3 165 0 9 1632 23 0 0 0 chr5 137288333 137288356 -15248903 + AT_rich Low_complexity Low_complexity 1 23 0 9 1632 279 0 0 0 chr5 137288411 137288442 -15248817 + (A)n Simple_repeat Simple_repeat 1 31 0 9 1632 678 170 131 0 chr5 137288442 137288595 -15248664 + MTEb LTR MaLR 164 336 -43 9 1632 425 301 51 0 chr5 137288624 137288780 -15248479 - RSINE1 SINE B4 0 165 2 9 1632 2630 106 36 15 chr5 137288837 137289249 -15248010 + MTC LTR MaLR 1 421 0 9 1632 522 178 0 0 chr5 137289592 137289682 -15247577 - B1F2 SINE Alu -7 142 53 9 1632 426 311 106 97 chr5 137289682 137289809 -15247450 - B4 SINE B4 -73 219 1 9 1632 414 0 0 0 chr5 137290123 137290169 -15247090 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1632 230 310 14 0 chr5 137290209 137290280 -15246979 + PB1D10 SINE Alu 5 76 -41 9 1632 301 289 13 0 chr5 137290302 137290378 -15246881 + ID4 SINE ID 2 78 -5 9 1632 816 165 0 0 chr5 137290443 137290570 -15246689 - RSINE1 SINE B4 -35 130 4 9 1632 1199 158 14 5 chr5 137290816 137291026 -15246233 - B3 SINE B2 0 216 5 9 1632 642 236 45 0 chr5 137291213 137291370 -15245889 + RSINE1 SINE B4 2 165 0 9 1632 32 0 0 0 chr5 137291379 137291411 -15245848 + AT_rich Low_complexity Low_complexity 1 32 0 9 1632 1317 170 33 69 chr5 137291422 137291756 -15245503 - RLTRETN_Mm LTR ERVK 0 322 1 9 1632 903 281 36 0 chr5 137291857 137292131 -15245128 + B4A SINE B4 1 284 -8 9 1632 463 341 6 6 chr5 137292145 137292325 -15244934 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1632 365 214 28 101 chr5 137292408 137292517 -15244742 + MT2B LTR ERVL 156 256 -345 9 1632 809 151 0 21 chr5 137292424 137292566 -15244693 + B1_Mur3 SINE Alu 11 149 0 9 1632 213 39 0 0 chr5 137292800 137292826 -15244433 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9 1632 250 265 0 117 chr5 137292826 137292937 -15244322 - PB1D10 SINE Alu -19 98 1 9 1632 619 265 12 0 chr5 137293043 137293205 -15244054 + RSINE1 SINE B4 2 165 0 9 1632 224 214 0 0 chr5 137293216 137293258 -15244001 + B3A SINE B2 1 42 -156 9 1632 1211 57 0 0 chr5 137293259 137293417 -15243842 + B2_Mm2 SINE B2 1 158 -37 9 1632 311 23 0 44 chr5 137293417 137293462 -15243797 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 9 1632 720 222 117 0 chr5 137293463 137293625 -15243634 + B3 SINE B2 32 212 -4 9 1632 585 168 18 27 chr5 137293629 137293739 -15243520 - B1_Mur4 SINE Alu 0 150 42 9 1632 1156 161 0 0 chr5 137293768 137294032 -15243227 + (TCTCTG)n Simple_repeat Simple_repeat 1 264 0 9 1632 338 111 0 36 chr5 137294041 137294097 -15243162 - PB1D9 SINE Alu -66 54 1 9 1632 268 184 6 96 chr5 137294097 137294108 -15243151 - B4 SINE B4 -77 121 80 9 1632 23 33 0 0 chr5 137294108 137294138 -15243121 + AT_rich Low_complexity Low_complexity 1 30 0 9 1632 241 143 0 0 chr5 137294171 137294213 -15243046 + PB1D10 SINE Alu 75 116 -1 9 1632 312 312 109 23 chr5 137294514 137294642 -15242617 + HAL1 LINE L1 52 190 -2317 9 1632 236 222 110 12 chr5 137294672 137294754 -15242505 + PB1D7 SINE Alu 12 101 -19 9 1632 429 262 66 46 chr5 137294786 137294898 -15242361 + RSINE1 SINE B4 11 125 -40 9 1632 1017 150 0 0 chr5 137294898 137295078 -15242181 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1632 429 262 66 46 chr5 137295078 137295117 -15242142 + RSINE1 SINE B4 126 165 0 9 1632 254 73 0 24 chr5 137295120 137295162 -15242097 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1632 218 57 0 54 chr5 137295161 137295198 -15242061 + (TAAAAA)n Simple_repeat Simple_repeat 5 39 0 9 1632 190 237 13 13 chr5 137295251 137295328 -15241931 + GA-rich Low_complexity Low_complexity 2 78 0 9 1632 443 280 119 29 chr5 137295489 137295732 -15241527 + HAL1 LINE L1 414 678 -1829 9 1632 299 250 28 0 chr5 137296000 137296072 -15241187 + ID4 SINE ID 1 74 -9 9 1632 784 246 28 50 chr5 137296899 137297095 -15240164 - B3 SINE B2 -3 213 22 9 1632 3245 44 0 5 chr5 137297095 137297510 -15239749 - L1Md_F3 LINE L1 -1 6583 6171 9 1632 784 246 28 50 chr5 137297510 137297531 -15239728 - B3 SINE B2 -195 21 1 9 1632 264 130 0 0 chr5 137297531 137297577 -15239682 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 9 1632 203 140 0 20 chr5 137297591 137297642 -15239617 + GA-rich Low_complexity Low_complexity 1 50 0 9 1632 650 269 0 0 chr5 137297649 137297790 -15239469 - RSINE1 SINE B4 -21 144 4 9 1632 363 305 47 19 chr5 137297821 137297928 -15239331 - B4 SINE B4 -152 140 31 9 1632 1615 178 155 3 chr5 137298006 137298367 -15238892 + MTD LTR MaLR 2 417 -2 9 1632 292 286 103 0 chr5 137298401 137298527 -15238732 + B1F SINE Alu 5 143 -6 9 1632 349 188 0 0 chr5 137298621 137298690 -15238569 - B3A SINE B2 -102 96 28 9 1632 1609 140 8 105 chr5 137298695 137299065 -15238194 + ORR1B1 LTR MaLR 7 392 -2 9 1632 798 233 6 6 chr5 137299100 137299277 -15237982 - MTE2b LTR MaLR -200 179 3 9 1632 203 0 37 0 chr5 137299463 137299490 -15237769 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 9 1632 188 238 0 23 chr5 137299626 137299669 -15237590 - MIRc SINE MIR -117 151 110 9 1632 341 243 14 0 chr5 137299858 137299932 -15237327 + ID4 SINE ID 1 75 -8 9 1632 21 0 0 0 chr5 137299939 137299960 -15237299 + AT_rich Low_complexity Low_complexity 1 21 0 9 1632 1268 59 0 31 chr5 137299963 137300321 -15236938 + (TAGA)n Simple_repeat Simple_repeat 1 346 0 9 1632 770 254 6 12 chr5 137300355 137300526 -15236733 + B4A SINE B4 55 224 -68 9 1632 362 85 17 0 chr5 137300612 137300671 -15236588 + (CA)n Simple_repeat Simple_repeat 1 60 0 9 1632 969 244 14 0 chr5 137300771 137300984 -15236275 + B3 SINE B2 1 216 0 9 1632 294 182 0 0 chr5 137300988 137301043 -15236216 + ID_B1 SINE B4 169 223 -1 9 1632 292 179 156 6 chr5 137301056 137301148 -15236111 + B4A SINE B4 2 105 -60 9 1632 398 240 104 32 chr5 137301158 137301283 -15235976 + B4A SINE B4 41 174 -118 9 1632 557 275 77 5 chr5 137301746 137301954 -15235305 + ID_B1 SINE B4 2 224 0 9 1632 401 290 0 0 chr5 137301990 137302090 -15235169 + PB1D10 SINE Alu 1 100 -17 9 1632 504 0 0 0 chr5 137302094 137302150 -15235109 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 1632 208 323 0 47 chr5 137302804 137302976 -15234283 + (GGGTG)n Simple_repeat Simple_repeat 2 165 0 9 1632 308 299 0 47 chr5 137303015 137303187 -15234072 + (GGGTG)n Simple_repeat Simple_repeat 2 165 0 9 1632 290 302 0 47 chr5 137303358 137303528 -15233731 + (GGGTG)n Simple_repeat Simple_repeat 4 165 0 9 1632 222 331 0 41 chr5 137303569 137303739 -15233520 + (GGGTG)n Simple_repeat Simple_repeat 3 165 0 9 1632 827 241 64 28 chr5 137303969 137304251 -15233008 + B4A SINE B4 1 292 0 9 1632 311 250 27 27 chr5 137304286 137304360 -15232899 + B4 SINE B4 219 292 0 9 1632 672 220 0 0 chr5 137304366 137304525 -15232734 + (CA)n Simple_repeat Simple_repeat 1 159 0 9 1632 210 238 0 113 chr5 137304631 137304702 -15232557 + B4 SINE B4 69 131 -161 9 1632 695 156 116 8 chr5 137304660 137304789 -15232470 + B1_Mur4 SINE Alu 6 148 -2 1 1632 590 253 132 21 chr5 137304837 137305027 -15232232 - ID_B1 SINE B4 0 224 14 1 1632 415 235 0 144 chr5 137305046 137305185 -15232074 + B4 SINE B4 170 288 -4 9 1632 1168 45 0 0 chr5 137305453 137305610 -15231649 - ZP3AR Satellite Satellite -14 198 42 1 1632 524 239 13 60 chr5 137306413 137306629 -15230630 - MTEa LTR MaLR -3 376 164 1 1632 410 321 44 57 chr5 137306838 137307066 -15230193 + RMER15 LTR ERVL 346 570 -5 1 1632 515 246 15 7 chr5 137307101 137307236 -15230023 - MTEa LTR MaLR -223 136 1 1 1632 2019 163 53 173 chr5 137307245 137307869 -15229390 + RMER19C LTR ERVK 2 550 -61 1 1632 1155 199 108 24 chr5 137307881 137308241 -15229018 + RLTR26 LTR ERVK 5 430 -212 1 1632 753 243 0 0 chr5 137308267 137308588 -15228671 + (CAGG)n Simple_repeat Simple_repeat 1 321 0 1 1632 396 319 0 14 chr5 137308591 137308731 -15228528 + RLTR26 LTR ERVK 494 631 -11 1 1632 432 116 0 0 chr5 137308763 137308832 -15228427 + RMER19C LTR ERVK 543 611 0 1 1632 724 244 24 81 chr5 137309161 137309371 -15227888 - B3A SINE B2 0 198 1 1 1632 422 300 223 0 chr5 137309515 137309747 -15227512 + B4A SINE B4 2 284 -8 1 1632 450 298 76 38 chr5 137309769 137309954 -15227305 - L1MA5 LINE L1 -397 5903 5697 1 1632 689 326 80 46 chr5 137309995 137310407 -15226852 + Lx8 LINE L1 6961 7386 -87 1 1632 1067 200 5 5 chr5 137310491 137310702 -15226557 + B3 SINE B2 1 211 -5 1 1632 489 127 0 0 chr5 137310712 137310791 -15226468 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 1 1632 1973 117 8 71 chr5 137310836 137311187 -15226072 + ORR1A4 LTR MaLR 1 329 0 1 1632 300 238 0 0 chr5 137311241 137311325 -15225934 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1632 216 0 0 0 chr5 137311606 137311630 -15225629 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1632 559 215 86 80 chr5 137311886 137312048 -15225211 + B4A SINE B4 120 282 -10 1 1632 1440 114 12 6 chr5 137312839 137313168 -15224091 - ZP3AR Satellite Satellite 0 331 1 1 1632 271 321 48 55 chr5 137313168 137313313 -15223946 - B1F1 SINE Alu -5 144 1 1 1632 780 289 43 32 chr5 137313522 137313801 -15223458 + B4 SINE B4 2 283 -9 1 1632 377 266 43 68 chr5 137313768 137313885 -15223374 + RSINE1 SINE B4 50 163 -2 1 1632 1017 65 65 0 chr5 137313909 137314047 -15223212 + B1_Mus2 SINE Alu 1 147 0 1 1632 314 351 137 9 chr5 137314051 137314233 -15223026 + HAL1 LINE L1 1140 1351 -1156 1 1632 359 282 25 25 chr5 137314233 137314353 -15222906 + PB1D7 SINE Alu 1 120 0 1 1632 314 351 137 9 chr5 137314353 137314397 -15222862 + HAL1 LINE L1 1352 1394 -1113 1 1632 818 273 0 5 chr5 137314847 137315048 -15222211 + B4 SINE B4 4 203 -89 1 1632 718 238 63 19 chr5 137315048 137315254 -15222005 + B3 SINE B2 2 216 0 1 1632 501 305 35 0 chr5 137315262 137315436 -15221823 + B3A SINE B2 1 180 -18 1 1632 730 205 0 20 chr5 137315571 137315720 -15221539 - RSINE1 SINE B4 -17 148 3 1 1632 198 305 0 0 chr5 137315773 137315832 -15221427 - MIR SINE MIR -107 155 97 1 1632 218 250 0 19 chr5 137316489 137316542 -15220717 + B1_Mus2 SINE Alu 1 52 -95 1 1632 433 265 29 10 chr5 137316560 137316663 -15220596 + B1_Mur1 SINE Alu 32 136 -13 1 1632 1530 148 64 1 chr5 137316685 137316957 -15220302 - MTC LTR MaLR -102 319 1 1 1632 1258 85 10 26 chr5 137317061 137317255 -15220004 - B2_Mm1a SINE B2 -2 191 1 1 1632 561 234 9 0 chr5 137317286 137317393 -15219866 - RSINE1 SINE B4 -35 130 23 1 1632 484 252 50 201 chr5 137317657 137317975 -15219284 + B4A SINE B4 5 274 -18 1 1632 612 244 19 13 chr5 137317986 137318140 -15219119 + MTD LTR MaLR 169 323 -96 1 1632 725 221 0 47 chr5 137318365 137318536 -15218723 + RSINE1 SINE B4 3 165 0 1 1632 347 222 24 12 chr5 137319021 137319105 -15218154 + PB1D10 SINE Alu 32 127 0 1 1632 438 20 0 0 chr5 137319123 137319174 -15218085 + (GA)n Simple_repeat Simple_repeat 2 52 0 1 1632 211 270 76 63 chr5 137319174 137319251 -15218008 + B4 SINE B4 18 95 -197 1 1632 532 207 8 55 chr5 137319251 137319379 -15217880 + RSINE1 SINE B4 3 124 -41 1 1632 243 0 0 0 chr5 137319388 137319415 -15217844 + (CAT)n Simple_repeat Simple_repeat 1 27 0 1 1632 504 304 50 6 chr5 137319443 137319602 -15217657 + B4 SINE B4 126 291 -1 1 1632 192 239 0 43 chr5 137319747 137319839 -15217420 + GA-rich Low_complexity Low_complexity 2 89 0 1 1632 536 234 182 28 chr5 137320387 137320563 -15216696 - MTEa LTR MaLR -13 366 164 1 1632 2302 145 15 8 chr5 137320633 137321030 -15216229 - RMER20A LTR ERVK -106 410 11 1 1632 736 236 25 70 chr5 137321084 137321326 -15215933 - B4 SINE B4 -59 233 3 1 1632 530 251 6 82 chr5 137321477 137321659 -15215600 - B4 SINE B4 -123 169 2 1 1632 330 227 102 0 chr5 137321668 137321756 -15215503 - PB1D10 SINE Alu 0 117 21 1 1632 261 186 0 0 chr5 137321780 137321850 -15215409 + CT-rich Low_complexity Low_complexity 2 71 0 1 1632 508 220 223 32 chr5 137321869 137322057 -15215202 - ID_B1 SINE B4 0 224 1 1 1632 205 278 40 27 chr5 137322602 137322676 -15214583 - MIRb SINE MIR -71 197 123 1 1632 1152 239 115 53 chr5 137323564 137323599 -15213660 - MTE2b LTR MaLR -18 361 326 1 1632 474 18 0 0 chr5 137323599 137323654 -15213605 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 1 1632 1152 239 115 53 chr5 137323654 137323958 -15213301 - MTE2b LTR MaLR -54 325 2 1 1632 391 132 44 0 chr5 137323981 137324049 -15213210 + RLTR30 LTR ERV1 1 71 -308 1 1632 628 286 64 122 chr5 137324130 137324615 -15212644 + RLTR18 LTR ERVK 135 591 -25 1 1632 1155 112 185 142 chr5 137324643 137324868 -15212391 + RLTR30 LTR ERV1 65 335 -44 1 1632 759 78 0 0 chr5 137324868 137324971 -15212288 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 1 1632 1155 112 185 142 chr5 137324971 137324998 -15212261 + RLTR30 LTR ERV1 336 336 -43 1 1632 874 175 0 0 chr5 137324998 137325141 -15212118 - B1_Mur4 SINE Alu -6 144 2 1 1632 1155 112 185 142 chr5 137325141 137325189 -15212070 + RLTR30 LTR ERV1 336 379 0 1 1632 539 244 23 8 chr5 137325232 137325364 -15211895 - B1_Mur1 SINE Alu -13 136 3 1 1632 603 278 113 0 chr5 137325415 137325627 -15211632 + MTEb LTR MaLR 36 271 -108 1 1632 345 305 38 0 chr5 137325619 137325724 -15211535 - MTEa LTR MaLR -268 111 3 1 1632 1502 73 7 12 chr5 137326134 137326483 -15210776 + ZP3AR Satellite Satellite 1 347 0 1 1632 1000 107 0 20 chr5 137326915 137327067 -15210192 + B1_Mur4 SINE Alu 2 150 0 1 1632 436 236 38 89 chr5 137326929 137327087 -15210172 + B4A SINE B4 97 246 -46 1 1632 445 277 33 32 chr5 137327099 137327223 -15210036 + B1F SINE Alu 1 123 -26 1 1632 823 222 73 15 chr5 137327488 137327694 -15209565 - ID_B1 SINE B4 -3 221 4 1 1632 260 295 0 59 chr5 137327793 137327912 -15209347 + PB1D10 SINE Alu 1 112 -5 1 1632 618 242 64 5 chr5 137327919 137328106 -15209153 + B3A SINE B2 1 198 0 1 1632 602 180 89 52 chr5 137328145 137328280 -15208979 + B1_Mur3 SINE Alu 10 149 0 1 1632 608 268 14 7 chr5 137328288 137328427 -15208832 + ID_B1 SINE B4 81 220 -4 1 1632 378 224 11 76 chr5 137328571 137328663 -15208596 + B3A SINE B2 97 182 -34 1 1632 437 339 122 14 chr5 137328695 137328916 -15208343 + ORR1E LTR MaLR 64 308 -51 1 1632 348 290 40 10 chr5 137328940 137329041 -15208218 - RSINE1 SINE B4 -54 111 8 1 1632 944 251 61 11 chr5 137329422 137329700 -15207559 + B4A SINE B4 1 292 0 1 1632 534 142 83 19 chr5 137329708 137329816 -15207443 + RSINE1 SINE B4 10 124 -41 1 1632 225 108 0 0 chr5 137329816 137329853 -15207406 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1632 615 257 96 0 chr5 137329879 137330066 -15207193 - B3 SINE B2 -11 205 1 1 1632 396 0 0 0 chr5 137330299 137330343 -15206916 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 1 1632 186 43 0 0 chr5 137330356 137330379 -15206880 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1632 333 0 0 0 chr5 137330406 137330443 -15206816 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1632 198 0 0 0 chr5 137330486 137330508 -15206751 + (CAGA)n Simple_repeat Simple_repeat 3 24 0 1 1632 399 268 16 24 chr5 137330549 137330562 -15206697 - RSINE1 SINE B4 -28 137 125 1 1632 360 0 0 0 chr5 137330562 137330602 -15206657 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1632 399 268 16 24 chr5 137330602 137330714 -15206545 - RSINE1 SINE B4 -41 124 13 1 1632 799 238 5 51 chr5 137330724 137330919 -15206340 - MTEa LTR MaLR -61 318 133 1 1632 250 306 0 0 chr5 137330931 137330993 -15206266 - B4 SINE B4 -5 287 226 1 1632 315 255 191 0 chr5 137331010 137331104 -15206155 - PB1D9 SINE Alu -6 114 3 1 1632 248 239 75 0 chr5 137331118 137331185 -15206074 - tRNA-Arg-CGY_ tRNA tRNA -4 72 1 1 1632 763 189 0 7 chr5 137331188 137331337 -15205922 - B4 SINE B4 -65 227 80 1 1632 387 0 0 0 chr5 137331340 137331383 -15205876 + (TATG)n Simple_repeat Simple_repeat 1 43 0 1 1632 451 272 101 13 chr5 137331418 137331567 -15205692 - RSINE1 SINE B4 -2 163 2 1 1632 265 289 0 38 chr5 137332144 137332223 -15205036 - ZP3AR Satellite Satellite -131 81 6 1 1632 562 249 39 56 chr5 137332343 137332514 -15204745 + B4A SINE B4 1 169 -123 1 1632 3425 71 21 11 chr5 137332514 137332984 -15204275 + MT2C_Mm LTR ERVL 1 475 0 1 1632 225 196 0 0 chr5 137333027 137333073 -15204186 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1632 737 76 9 0 chr5 137333138 137333243 -15204016 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 1 1632 287 297 68 59 chr5 137333246 137333364 -15203895 - PB1D10 SINE Alu 0 120 2 1 1632 1211 68 0 0 chr5 137333567 137333714 -15203545 + B1_Mm SINE Alu 1 147 0 1 1632 234 0 0 0 chr5 137333714 137333740 -15203519 + (TAAAAA)n Simple_repeat Simple_repeat 1 26 0 1 1632 884 128 74 53 chr5 137333742 137333932 -15203327 + B2_Mm2 SINE B2 2 195 0 1 1632 1000 235 67 58 chr5 137334110 137334432 -15202827 + B4A SINE B4 1 272 -20 1 1632 617 144 182 8 chr5 137334545 137334671 -15202588 + B1_Mur3 SINE Alu 2 149 0 1 1632 466 235 20 10 chr5 137336201 137336300 -15200959 - B4A SINE B4 -8 284 185 1 1632 421 0 0 63 chr5 137336351 137336414 -15200845 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 1 1632 1074 74 0 0 chr5 137336416 137336551 -15200708 - B1_Mus1 SINE Alu -6 142 8 1 1632 764 176 0 42 chr5 137336542 137336684 -15200575 - ZP3AR Satellite Satellite -61 151 16 1 1632 584 102 326 16 chr5 137336677 137336806 -15200453 - URR1A DNA MER1_type -57 169 1 1 1632 227 288 96 0 chr5 137336831 137336904 -15200355 + ID4 SINE ID 1 80 -3 1 1632 504 48 0 0 chr5 137337831 137337894 -15199365 + (TCC)n Simple_repeat Simple_repeat 1 63 0 1 1632 556 276 134 15 chr5 137337894 137338096 -15199163 + RMER15 LTR ERVL 329 554 -21 1 1632 586 258 24 30 chr5 137338244 137338408 -15198851 - RSINE1 SINE B4 -2 163 1 1 1632 333 0 0 0 chr5 137338529 137338566 -15198693 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1632 788 284 85 54 chr5 137338586 137338846 -15198413 - B4A SINE B4 -21 271 4 1 1632 751 241 120 5 chr5 137338956 137339156 -15198103 + ID_B1 SINE B4 2 224 0 1 1632 243 0 0 0 chr5 137339156 137339183 -15198076 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1632 726 260 0 0 chr5 137339333 137339487 -15197772 + RSINE1 SINE B4 12 165 0 1 1632 518 195 76 57 chr5 137340134 137340292 -15196967 + B4A SINE B4 128 288 -4 1 1632 395 19 0 19 chr5 137340474 137340527 -15196732 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1632 824 232 43 14 chr5 137340570 137340780 -15196479 - ID_B1 SINE B4 -1 223 8 1 1632 389 129 14 0 chr5 137340870 137340940 -15196319 + (CAGA)n Simple_repeat Simple_repeat 4 74 0 1 1632 869 170 37 90 chr5 137341135 137341323 -15195936 + B3A SINE B2 5 182 -16 1 1632 264 226 0 0 chr5 137341323 137341385 -15195874 + (CA)n Simple_repeat Simple_repeat 1 62 0 1 1632 25 0 0 0 chr5 137341388 137341413 -15195846 + AT_rich Low_complexity Low_complexity 1 25 0 1 1632 555 251 150 21 chr5 137341462 137341649 -15195610 + B4A SINE B4 79 289 -3 1 1632 759 171 0 8 chr5 137341702 137341826 -15195433 + B1_Mur1 SINE Alu 27 149 0 1 1632 206 62 0 30 chr5 137341847 137341880 -15195379 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1632 670 233 6 81 chr5 137341938 137342111 -15195148 + RSINE1 SINE B4 3 162 -3 1 1632 332 254 0 0 chr5 137342215 137342286 -15194973 + ID_B1 SINE B4 148 218 -6 1 1632 1136 55 7 14 chr5 137342311 137342458 -15194801 + B1_Mus1 SINE Alu 3 148 0 1 1632 23 0 0 0 chr5 137342459 137342482 -15194777 + AT_rich Low_complexity Low_complexity 1 23 0 1 1632 858 109 0 0 chr5 137342496 137342624 -15194635 + (GAA)n Simple_repeat Simple_repeat 2 129 0 1 1632 996 129 0 7 chr5 137342719 137342860 -15194399 + B1_Mus2 SINE Alu 3 142 -5 1 1632 774 199 7 28 chr5 137342927 137343072 -15194187 - B1_Mur2 SINE Alu -1 148 7 1 1632 2058 142 90 8 chr5 137343128 137343482 -15193777 - Lx5 LINE L1 0 7050 6668 1 1632 449 209 123 35 chr5 137343490 137343604 -15193655 + B1F SINE Alu 26 149 0 1 1632 598 233 7 3 chr5 137343612 137343786 -15193473 + L1M4 LINE L1 4986 5163 -983 1 1632 840 282 80 47 chr5 137343791 137344054 -15193205 + B4A SINE B4 1 275 -17 1 1632 396 0 0 0 chr5 137344054 137344098 -15193161 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1632 261 0 0 0 chr5 137344098 137344126 -15193133 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1632 1249 197 10 0 chr5 137344161 137344364 -15192895 - B3 SINE B2 -11 205 1 1 1632 511 246 47 109 chr5 137344389 137344517 -15192742 + PB1D10 SINE Alu 9 128 -22 1 1632 259 325 0 0 chr5 137344725 137344802 -15192457 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1632 683 268 17 17 chr5 137344823 137344998 -15192261 + B4 SINE B4 43 217 -75 1 1632 781 215 22 93 chr5 137345040 137345233 -15192026 + B3A SINE B2 1 186 -30 1 1632 188 67 0 32 chr5 137345233 137345264 -15191995 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1632 772 215 22 93 chr5 137345264 137345296 -15191963 + B3 SINE B2 187 210 -6 1 1632 259 321 35 23 chr5 137345301 137345387 -15191872 + B4 SINE B4 206 292 0 1 1632 1556 75 1 5 chr5 137346149 137346465 -15190794 + ZP3AR Satellite Satellite 1 314 0 1 1632 345 225 113 0 chr5 137346465 137346536 -15190723 + ID4_ SINE ID 1 79 -4 1 1632 347 208 26 53 chr5 137346604 137346680 -15190579 + ID4 SINE ID 4 77 -6 1 1632 1183 75 0 13 chr5 137346732 137346881 -15190378 + B1_Mus1 SINE Alu 2 148 0 1 1632 591 304 62 0 chr5 137346883 137347044 -15190215 + B3A SINE B2 27 197 -1 1 1632 607 248 36 14 chr5 137347057 137347196 -15190063 + B1_Mur1 SINE Alu 6 147 -2 1 1632 50 18 0 0 chr5 137347201 137347258 -15190001 + AT_rich Low_complexity Low_complexity 1 57 0 1 1632 340 301 0 0 chr5 137347265 137347338 -15189921 + ID_B1 SINE B4 79 151 -73 1 1632 263 129 37 146 chr5 137347288 137347370 -15189889 - YREP_Mm Unknown Unknown -1516 296 224 1 1632 219 204 0 22 chr5 137347429 137347474 -15189785 + (CATA)n Simple_repeat Simple_repeat 3 46 0 1 1632 250 246 0 115 chr5 137347554 137347632 -15189627 + MT2B LTR ERVL 173 241 -360 1 1632 653 140 0 0 chr5 137347566 137347666 -15189593 + PB1D9 SINE Alu 21 120 0 1 1632 257 309 179 0 chr5 137347666 137347689 -15189570 + B4A SINE B4 106 250 -42 1 1632 183 42 0 0 chr5 137347703 137347727 -15189532 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 1 1632 971 105 0 7 chr5 137347727 137348029 -15189230 + (TG)n Simple_repeat Simple_repeat 1 299 0 1 1632 251 237 0 78 chr5 137348030 137348094 -15189165 - RSINE1 SINE B4 -63 102 44 1 1632 682 279 67 63 chr5 137348125 137348393 -15188866 + B4A SINE B4 6 274 -18 1 1632 232 250 0 68 chr5 137348368 137348441 -15188818 + B3A SINE B2 122 189 -9 1 1632 507 325 65 64 chr5 137348834 137349093 -15188166 + B4A SINE B4 6 287 -5 1 1632 358 182 0 43 chr5 137349077 137349146 -15188113 - B1_Mur4 SINE Alu -79 71 6 1 1632 968 126 14 0 chr5 137349192 137349335 -15187924 - B1_Mur4 SINE Alu -4 146 2 1 1632 285 29 0 0 chr5 137349737 137349771 -15187488 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1632 288 0 0 0 chr5 137349771 137349802 -15187457 + (GA)n Simple_repeat Simple_repeat 1 32 0 1 1632 587 234 84 35 chr5 137349822 137349964 -15187295 - RSINE1 SINE B4 -16 149 1 1 1632 240 35 0 0 chr5 137350559 137350588 -15186671 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1632 993 238 24 10 chr5 137350606 137350814 -15186445 + B4A SINE B4 4 214 -78 1 1632 1254 66 72 0 chr5 137350816 137350982 -15186277 + B2_Mm1t SINE B2 2 179 -14 1 1632 514 81 316 26 chr5 137351014 137351128 -15186131 + B2_Mm2 SINE B2 47 193 -2 1 1632 631 278 0 47 chr5 137351202 137351372 -15185887 + RSINE1 SINE B4 4 165 0 1 1632 720 71 0 0 chr5 137351379 137351478 -15185781 + (TG)n Simple_repeat Simple_repeat 2 100 0 1 1632 538 280 40 7 chr5 137351489 137351640 -15185619 - B3A SINE B2 -42 156 1 1 1632 1197 68 0 0 chr5 137351667 137351814 -15185445 + B1_Mus1 SINE Alu 2 148 0 1 1632 236 323 0 0 chr5 137352086 137352151 -15185108 - MER45C DNA Tip100 -482 471 407 1 1632 1023 238 90 28 chr5 137352360 137352757 -15184502 + RMER15 LTR ERVL 45 575 0 1 1632 493 200 0 32 chr5 137352864 137352957 -15184302 + B4 SINE B4 3 92 -200 1 1632 749 207 0 0 chr5 137352970 137353105 -15184154 + B1_Mus1 SINE Alu 2 136 -12 1 1632 535 219 0 0 chr5 137353137 137353233 -15184026 + RSINE1 SINE B4 2 97 -68 1 1632 251 372 7 74 chr5 137353233 137353285 -15183974 + B3A SINE B2 1 138 -60 1 1632 879 112 0 0 chr5 137353591 137353725 -15183534 + (TG)n Simple_repeat Simple_repeat 2 135 0 1 1632 487 261 14 34 chr5 137353750 137353897 -15183362 - B4A SINE B4 -137 155 12 1 1632 484 151 311 0 chr5 137354112 137354218 -15183041 + B1_Mus2 SINE Alu 2 140 -7 1 1632 453 19 0 0 chr5 137354240 137354294 -15182965 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1632 473 266 160 10 chr5 137354447 137354641 -15182618 + ID_B1 SINE B4 2 224 0 1 1632 773 310 86 12 chr5 137354644 137354899 -15182360 + B4 SINE B4 1 274 -18 1 1632 245 207 0 33 chr5 137355425 137355485 -15181774 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1632 216 300 100 0 chr5 137355514 137355574 -15181685 + ID SINE ID 13 78 -146 1 1632 641 196 133 12 chr5 137355909 137356074 -15181185 - B4A SINE B4 0 292 108 1 1632 282 87 0 0 chr5 137356310 137356356 -15180903 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1632 333 321 44 7 chr5 137356443 137356578 -15180681 + B1F1 SINE Alu 1 140 -9 1 1632 404 235 0 12 chr5 137356593 137356675 -15180584 + B4A SINE B4 1 81 -211 1 1632 294 202 30 193 chr5 137357021 137357038 -15180221 - B2_Mm2 SINE B2 -23 172 157 1 1632 225 0 0 0 chr5 137357038 137357063 -15180196 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1632 476 202 30 193 chr5 137357063 137357211 -15180048 - B3A SINE B2 -32 166 34 1 1632 190 298 17 17 chr5 137359315 137359373 -15177886 - MIRc SINE MIR -107 161 104 1 1632 242 271 286 66 chr5 137359404 137359586 -15177673 + B4A SINE B4 68 289 -3 1 1632 273 303 109 20 chr5 137359629 137359730 -15177529 + PB1D10 SINE Alu 7 116 -1 1 1632 313 304 137 0 chr5 137360146 137360248 -15177011 + PB1D10 SINE Alu 2 117 0 1 1632 860 150 54 7 chr5 137360561 137360709 -15176550 + ZP3AR Satellite Satellite 47 201 -11 1 1632 239 304 29 0 chr5 137360709 137360778 -15176481 + ID4_ SINE ID 1 71 -12 1 1632 414 0 0 0 chr5 137360779 137360825 -15176434 + (TC)n Simple_repeat Simple_repeat 2 47 0 1 1632 779 221 7 0 chr5 137360948 137361088 -15176171 - B1_Mur3 SINE Alu -7 142 2 1 1632 325 180 98 8 chr5 137361235 137361321 -15175938 - MIRb SINE MIR -98 170 80 1 1632 922 79 6 108 chr5 137361463 137361620 -15175639 + B1_Mus1 SINE Alu 1 141 -7 1 1632 1178 117 0 6 chr5 137361627 137361799 -15175460 + B2_Mm2 SINE B2 25 195 0 1 1632 246 180 0 0 chr5 137361811 137361872 -15175387 + A-rich Low_complexity Low_complexity 1 61 0 1 1632 577 220 0 0 chr5 137361872 137361972 -15175287 + ID_B1 SINE B4 123 222 -2 1 1632 260 288 17 67 chr5 137361978 137362097 -15175162 + MIR SINE MIR 150 262 0 1 1632 388 241 0 35 chr5 137362199 137362285 -15174974 - ID4_ SINE ID 0 83 1 1 1632 408 256 24 64 chr5 137362465 137362590 -15174669 - RSINE1 SINE B4 -35 130 11 1 1632 237 308 65 83 chr5 137362584 137362617 -15174642 - YREP_Mm Unknown Unknown -1467 345 259 1 1632 739 247 0 7 chr5 137362617 137362764 -15174495 + ID_B1 SINE B4 79 224 0 1 1632 237 308 65 83 chr5 137362764 137362814 -15174445 - YREP_Mm Unknown Unknown -1467 258 120 1 1632 285 169 24 155 chr5 137363129 137363213 -15174046 + B4 SINE B4 1 73 -219 1 1632 537 259 74 7 chr5 137363224 137363372 -15173887 + RSINE1 SINE B4 2 159 -6 1 1633 270 0 0 0 chr5 137363512 137363542 -15173717 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1633 250 292 0 89 chr5 137363782 137363861 -15173398 + ID4_ SINE ID 12 83 0 1 1633 241 333 0 0 chr5 137363887 137363959 -15173300 + PB1D10 SINE Alu 1 72 -45 1 1633 332 294 101 14 chr5 137363991 137364139 -15173120 + HAL1-3A_ME LINE L1 2284 2444 -414 1 1633 1326 78 0 0 chr5 137364150 137364330 -15172929 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1 1633 718 189 30 61 chr5 137364908 137364955 -15172304 + ID SINE ID 34 78 -146 1 1633 740 239 108 15 chr5 137364955 137365159 -15172100 + ID_B1 SINE B4 2 224 0 1 1633 718 189 30 61 chr5 137365159 137365308 -15171951 + ID_B1 SINE B4 79 224 0 1 1633 1133 42 0 14 chr5 137365166 137365310 -15171949 + B1_Mm SINE Alu 6 147 0 1 1633 212 0 0 35 chr5 137365311 137365340 -15171919 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 1 1633 1208 201 56 174 chr5 137365419 137365792 -15171467 + MTE2a LTR MaLR 1 329 -50 1 1633 390 265 105 124 chr5 137365827 137365964 -15171295 - L1M4c LINE L1 -5335 1049 915 1 1633 1187 89 15 87 chr5 137365964 137366160 -15171099 + B2_Mm2 SINE B2 2 183 -12 1 1633 390 265 105 124 chr5 137366160 137366393 -15170866 - L1M4c LINE L1 -5470 914 686 1 1633 408 221 186 0 chr5 137366406 137366519 -15170740 - ID_B1 SINE B4 -7 217 84 1 1633 219 255 0 0 chr5 137366533 137366580 -15170679 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1633 608 221 20 46 chr5 137366795 137366947 -15170312 - B3 SINE B2 -68 148 1 1 1633 436 195 71 24 chr5 137366952 137367078 -15170181 + L1MD3 LINE L1 7845 7976 -19 1 1633 515 291 81 68 chr5 137367131 137367367 -15169892 + B4A SINE B4 1 239 -53 1 1633 359 283 55 36 chr5 137367546 137367711 -15169548 + L1MC5 LINE L1 7610 7777 -184 1 1633 415 202 200 8 chr5 137367715 137367835 -15169424 + ID_B1 SINE B4 80 222 -2 1 1633 614 215 8 8 chr5 137367930 137368052 -15169207 + RSINE1 SINE B4 3 124 -41 1 1633 210 71 0 0 chr5 137368052 137368080 -15169179 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1633 183 42 0 0 chr5 137368081 137368105 -15169154 + (CAGAGA)n Simple_repeat Simple_repeat 1 24 0 1 1633 297 167 0 0 chr5 137368101 137368155 -15169104 + GA-rich Low_complexity Low_complexity 3 56 0 1 1633 889 197 0 55 chr5 137368181 137368380 -15168879 + B3A SINE B2 2 189 -9 1 1633 1176 41 7 20 chr5 137368543 137368691 -15168568 + B1_Mus2 SINE Alu 1 146 -1 1 1633 350 134 15 0 chr5 137368710 137368777 -15168482 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 1 1633 319 265 48 0 chr5 137368830 137368913 -15168346 + B4 SINE B4 137 223 -69 1 1633 342 274 0 12 chr5 137368961 137369046 -15168213 + RSINE1 SINE B4 82 165 0 1 1633 282 125 0 0 chr5 137369049 137369097 -15168162 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1633 22 0 0 0 chr5 137369099 137369121 -15168138 + AT_rich Low_complexity Low_complexity 1 22 0 1 1633 897 164 70 149 chr5 137369144 137369182 -15168077 + B3 SINE B2 2 28 -188 1 1633 216 0 0 0 chr5 137369182 137369206 -15168053 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1633 897 164 70 149 chr5 137369206 137369382 -15167877 + B3 SINE B2 29 199 -17 1 1633 1265 97 5 26 chr5 137369382 137369572 -15167687 + B2_Mm2 SINE B2 1 186 -9 1 1633 543 156 97 35 chr5 137369607 137369720 -15167539 + PB1D9 SINE Alu 1 120 0 1 1633 297 299 107 20 chr5 137369733 137369883 -15167376 + RSINE1 SINE B4 3 165 0 1 1633 926 100 7 0 chr5 137369894 137370034 -15167225 + (GAA)n Simple_repeat Simple_repeat 1 141 0 1 1633 1032 77 0 19 chr5 137370062 137370221 -15167038 + (GAA)n Simple_repeat Simple_repeat 3 158 0 1 1633 264 349 0 0 chr5 137370226 137370292 -15166967 + B4 SINE B4 226 291 -1 1 1633 683 264 18 25 chr5 137370369 137370532 -15166727 + RSINE1 SINE B4 2 163 -2 1 1633 878 166 7 14 chr5 137370553 137370700 -15166559 - B1_Mus2 SINE Alu -1 146 1 1 1633 519 263 41 123 chr5 137371552 137371747 -15165512 + B3A SINE B2 3 181 -17 1 1633 24 32 0 0 chr5 137371772 137371803 -15165456 + AT_rich Low_complexity Low_complexity 1 31 0 1 1633 1218 48 0 7 chr5 137371813 137371960 -15165299 + B1_Mus2 SINE Alu 2 147 0 1 1633 195 42 0 0 chr5 137372159 137372183 -15165076 + (A)n Simple_repeat Simple_repeat 1 24 0 1 1633 492 219 10 0 chr5 137372385 137372481 -15164778 + B3A SINE B2 2 98 -100 1 1633 407 202 8 99 chr5 137372962 137373083 -15164176 + B3A SINE B2 89 198 0 1 1633 325 175 31 93 chr5 137373162 137373250 -15164009 + PB1D10 SINE Alu 46 130 -19 1 1633 1272 91 51 0 chr5 137373310 137373486 -15163773 - B2_Mm1t SINE B2 -7 186 2 1 1633 245 89 0 22 chr5 137373561 137373575 -15163684 + (CAAAAA)n Simple_repeat Simple_repeat 2 15 0 1 1633 1277 85 21 16 chr5 137373575 137373766 -15163493 + B2_Mm1a SINE B2 2 193 0 1 1633 245 89 0 22 chr5 137373766 137373797 -15163462 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 1 1633 745 263 31 31 chr5 137373798 137373990 -15163269 + B4 SINE B4 81 272 -20 1 1633 2600 160 81 8 chr5 137373992 137374471 -15162788 - RLTR11A LTR ERVK 0 528 15 1 1633 330 67 0 0 chr5 137374471 137374516 -15162743 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1633 243 85 33 33 chr5 137374542 137374603 -15162656 + (CAGAGA)n Simple_repeat Simple_repeat 6 66 0 1 1633 1235 48 0 0 chr5 137374753 137374899 -15162360 + B1_Mus2 SINE Alu 2 147 0 1 1633 923 235 5 0 chr5 137374987 137375165 -15162094 + ID_B1 SINE B4 1 179 -45 1 1633 392 257 114 138 chr5 137375165 137375332 -15161927 + RSINE1 SINE B4 2 164 -1 1 1633 420 20 0 0 chr5 137375332 137375381 -15161878 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1633 776 157 0 0 chr5 137375411 137375526 -15161733 + B1_Mus2 SINE Alu 1 115 -32 1 1633 512 258 103 32 chr5 137375526 137375563 -15161696 + ID_B1 SINE B4 85 248 -44 1 1633 663 171 84 15 chr5 137376208 137376339 -15160920 + B1_Mur1 SINE Alu 10 149 0 1 1633 1500 152 170 25 chr5 137376368 137376583 -15160676 - RMER17C LTR ERVK 0 410 140 1 1633 1122 99 0 0 chr5 137376583 137376745 -15160514 + (GAGAA)n Simple_repeat Simple_repeat 5 166 0 1 1633 1500 152 170 25 chr5 137376745 137376887 -15160372 - RMER17C LTR ERVK -271 139 1 1 1633 446 193 121 76 chr5 137376984 137377141 -15160118 + RSINE1 SINE B4 2 165 0 1 1633 422 286 127 8 chr5 137377225 137377285 -15159974 - RSINE1 SINE B4 -8 157 96 1 1633 426 20 0 0 chr5 137377285 137377336 -15159923 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1633 422 286 127 8 chr5 137377336 137377409 -15159850 - RSINE1 SINE B4 -70 95 8 1 1633 314 271 5 217 chr5 137377457 137377535 -15159724 + B1F SINE Alu 3 67 -82 1 1633 779 186 0 41 chr5 137377535 137377681 -15159578 + B1_Mus1 SINE Alu 2 141 -7 1 1633 337 287 0 108 chr5 137377681 137377731 -15159528 + ID_B1 SINE B4 158 198 -26 1 1633 314 271 5 217 chr5 137377731 137377786 -15159473 + B1F SINE Alu 68 147 -2 1 1633 505 219 37 37 chr5 137377810 137377919 -15159340 + B1_Mur2 SINE Alu 40 148 -1 1 1633 1629 52 3 4 chr5 137377943 137378245 -15159014 + ZP3AR Satellite Satellite 1 301 -111 1 1633 924 204 44 0 chr5 137378902 137379083 -15158176 + B3A SINE B2 8 196 -2 1 1633 1619 21 21 0 chr5 137379102 137379289 -15157970 + B2_Mm2 SINE B2 2 192 -3 1 1633 1352 85 0 11 chr5 137379419 137379598 -15157661 - B2_Mm2 SINE B2 -18 177 1 1 1633 261 0 0 0 chr5 137379629 137379658 -15157601 + (TG)n Simple_repeat Simple_repeat 1 29 0 1 1633 453 333 22 0 chr5 137379665 137379787 -15157472 + MTD LTR MaLR 6 130 -291 1 1633 952 176 210 26 chr5 137379787 137380098 -15157161 + RLTR20C LTR ERVK 1 476 -102 1 1633 414 0 0 0 chr5 137380098 137380144 -15157115 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1633 579 211 106 26 chr5 137380144 137380234 -15157025 + RLTR20C LTR ERVK 477 577 -1 1 1633 966 271 91 11 chr5 137380234 137380503 -15156756 + MTD LTR MaLR 123 413 -6 1 1633 732 152 36 0 chr5 137380495 137380607 -15156652 + B1_Mus2 SINE Alu 23 138 -9 1 1633 701 273 71 0 chr5 137380672 137380826 -15156433 - B3A SINE B2 -33 165 1 1 1633 877 290 27 4 chr5 137380826 137381050 -15156209 - B4A SINE B4 -62 230 2 1 1633 434 350 37 25 chr5 137381064 137381225 -15156034 - ID_B1 SINE B4 -6 218 56 1 1633 717 209 76 30 chr5 137381364 137381561 -15155698 + B4A SINE B4 2 207 -85 1 1633 841 220 10 62 chr5 137381578 137381772 -15155487 + B3 SINE B2 8 191 -25 1 1633 245 333 0 21 chr5 137381841 137381936 -15155323 + (CATA)n Simple_repeat Simple_repeat 2 94 0 1 1633 584 240 177 23 chr5 137382100 137382275 -15154984 + B4A SINE B4 6 207 -85 1 1633 360 111 0 0 chr5 137382277 137382331 -15154928 + (GGA)n Simple_repeat Simple_repeat 3 56 0 1 1633 1627 27 21 0 chr5 137382702 137382889 -15154370 - B2_Mm1a SINE B2 -1 192 2 1 1633 632 214 76 76 chr5 137383007 137383163 -15154096 + B3A SINE B2 1 158 -40 1 1633 249 33 0 0 chr5 137383163 137383193 -15154066 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1633 632 214 76 76 chr5 137383193 137383208 -15154051 + B3A SINE B2 159 172 -26 1 1633 228 35 0 0 chr5 137383216 137383245 -15154014 + (T)n Simple_repeat Simple_repeat 1 29 0 1 1633 289 255 74 19 chr5 137383245 137383353 -15153906 + L1MC4 LINE L1 6899 7012 -1030 1 1633 342 291 231 0 chr5 137383353 137383487 -15153772 + RSINE1 SINE B4 1 165 0 1 1633 431 214 20 30 chr5 137383542 137383643 -15153616 + B1_Mur2 SINE Alu 1 100 -49 1 1633 304 274 0 14 chr5 137383643 137383717 -15153542 + ID4 SINE ID 2 74 -9 1 1633 534 213 55 28 chr5 137384519 137384664 -15152595 + B1F SINE Alu 1 149 0 1 1633 351 0 0 0 chr5 137384665 137384704 -15152555 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 1 1633 651 278 37 23 chr5 137384879 137385096 -15152163 + ID_B1 SINE B4 1 220 -4 1 1633 331 281 82 10 chr5 137385138 137385235 -15152024 + B1F SINE Alu 12 115 -34 1 1633 786 239 28 11 chr5 137385267 137385445 -15151814 + B3A SINE B2 1 181 -17 1 1633 522 226 148 0 chr5 137385448 137385563 -15151696 + B1_Mur1 SINE Alu 3 134 -15 1 1633 290 45 0 22 chr5 137385572 137385617 -15151642 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 1 1633 282 222 138 9 chr5 137385678 137385768 -15151491 + PB1D10 SINE Alu 10 108 -9 1 1633 263 243 40 67 chr5 137385837 137385912 -15151347 - PB1D10 SINE Alu -5 112 40 1 1633 227 242 18 30 chr5 137386103 137386269 -15150990 + (TGGG)n Simple_repeat Simple_repeat 3 166 0 1 1633 214 257 9 9 chr5 137386282 137386388 -15150871 + (TGGA)n Simple_repeat Simple_repeat 3 108 0 1 1633 237 65 0 0 chr5 137386626 137386657 -15150602 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1 1633 320 250 41 52 chr5 137386829 137386926 -15150333 - B1F1 SINE Alu -41 108 13 1 1633 937 90 0 8 chr5 137387312 137387455 -15149804 + ZP3AR Satellite Satellite 1 141 -1 1 1633 258 264 0 0 chr5 137387427 137387480 -15149779 + tRNA-Ala-GCA tRNA tRNA 3 55 -20 1 1633 231 306 141 0 chr5 137387480 137387504 -15149755 + BC1_Mm scRNA scRNA 22 97 -55 1 1633 231 266 15 59 chr5 137387860 137387928 -15149331 - B4 SINE B4 -13 279 215 1 1633 748 213 21 7 chr5 137388009 137388151 -15149108 + ZP3AR Satellite Satellite 48 191 -21 1 1633 763 170 64 0 chr5 137388253 137388394 -15148865 - B1_Mur4 SINE Alu 0 150 1 1 1633 340 214 16 53 chr5 137388463 137388568 -15148691 + B1F SINE Alu 9 115 -34 1 1633 512 198 10 29 chr5 137388932 137389036 -15148223 + PB1D10 SINE Alu 4 105 -12 1 1633 367 172 275 23 chr5 137389276 137389407 -15147852 + RSINE1 SINE B4 2 165 0 1 1633 652 269 47 0 chr5 137389430 137389601 -15147658 + B3A SINE B2 3 181 -17 1 1633 1248 252 95 0 chr5 137389602 137389939 -15147320 - ORR1D2 LTR MaLR -1 369 1 1 1633 881 275 16 104 chr5 137390138 137390367 -15146892 + B4 SINE B4 2 227 -65 1 1633 412 316 73 26 chr5 137390367 137390640 -15146619 + B4A SINE B4 2 287 -5 1 1633 881 275 16 104 chr5 137390640 137390727 -15146532 + B4 SINE B4 228 290 -2 1 1633 457 300 8 30 chr5 137390759 137390893 -15146366 + ID_B1 SINE B4 94 224 0 1 1633 263 279 0 0 chr5 137391026 137391087 -15146172 + RSINE1 SINE B4 1 61 -104 1 1633 350 284 10 31 chr5 137391308 137391406 -15145853 - MLT1D LTR MaLR -82 423 328 1 1633 761 152 0 55 chr5 137391415 137391561 -15145698 - B1_Mus1 SINE Alu -2 146 9 1 1633 347 330 102 68 chr5 137391786 137392108 -15145151 + ORR1E LTR MaLR 27 359 0 1 1633 727 263 51 0 chr5 137392473 137392648 -15144611 + B3 SINE B2 3 186 -30 1 1633 258 105 0 0 chr5 137392677 137392715 -15144544 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 1 1633 267 250 15 0 chr5 137392747 137392815 -15144444 + B1_Mur1 SINE Alu 74 142 -7 1 1633 359 290 11 21 chr5 137392818 137392913 -15144346 + ZP3AR Satellite Satellite 45 138 -74 1 1633 236 254 14 27 chr5 137392868 137392941 -15144318 + B4 SINE B4 1 72 -220 1 1633 555 258 110 50 chr5 137393192 137393260 -15143999 - ID_B1 SINE B4 -1 223 159 1 1633 2915 46 46 0 chr5 137393260 137393609 -15143650 - RLTR10B2 LTR ERVK 0 365 1 1 1633 555 258 110 50 chr5 137393609 137393740 -15143519 - ID_B1 SINE B4 -66 158 12 1 1633 2552 50 85 0 chr5 137394126 137394445 -15142814 - ORR1A1 LTR MaLR 0 346 1 1 1633 21 0 0 0 chr5 137395419 137395440 -15141819 + GC_rich Low_complexity Low_complexity 1 21 0 1 1633 216 194 88 15 chr5 137395532 137395600 -15141659 + B4A SINE B4 2 74 -218 1 1633 227 183 11 89 chr5 137395994 137396084 -15141175 + T-rich Low_complexity Low_complexity 3 85 0 1 1633 355 317 40 40 chr5 137396109 137396234 -15141025 - RSINE1 SINE B4 -33 132 8 1 1633 438 196 0 30 chr5 137396241 137396341 -15140918 - PB1D7 SINE Alu -1 119 23 1 1633 226 300 10 72 chr5 137396268 137396365 -15140894 + YREP_Mm Unknown Unknown 228 318 -1494 1 1633 576 257 6 63 chr5 137396375 137396533 -15140726 + B1F2 SINE Alu 1 149 0 1 1633 479 285 97 97 chr5 137396563 137396831 -15140428 + B4 SINE B4 25 292 0 1 1633 25 31 0 0 chr5 137396954 137396986 -15140273 + AT_rich Low_complexity Low_complexity 1 32 0 1 1633 1188 68 0 0 chr5 137397260 137397408 -15139851 - B1_Mus1 SINE Alu 0 148 1 1 1633 664 258 0 48 chr5 137397408 137397575 -15139684 + B3A SINE B2 40 198 0 1 1633 310 282 105 15 chr5 137397616 137397749 -15139510 + B1F1 SINE Alu 5 149 0 1 1633 365 274 37 9 chr5 137397735 137397752 -15139507 + B4 SINE B4 69 178 -114 1 1633 559 135 0 11 chr5 137397752 137397842 -15139417 + B1_Mur3 SINE Alu 1 89 -60 1 1633 457 245 227 0 chr5 137397877 137398040 -15139219 + ID_B1 SINE B4 2 201 -23 1 1633 309 300 54 9 chr5 137398729 137398840 -15138419 + PB1D7 SINE Alu 4 119 -1 1 1633 237 349 19 19 chr5 137399041 137399149 -15138110 + MIRc SINE MIR 52 159 -109 1 1633 719 75 9 0 chr5 137399151 137399257 -15138002 + ZP3AR Satellite Satellite 42 148 -64 1 1633 385 172 16 0 chr5 137399257 137399321 -15137938 + ID4 SINE ID 1 65 -18 1 1633 185 59 57 38 chr5 137399430 137399483 -15137776 + T-rich Low_complexity Low_complexity 2 55 0 1 1633 426 248 26 34 chr5 137399487 137399604 -15137655 - PB1D10 SINE Alu -1 116 1 1 1633 217 324 0 13 chr5 137400207 137400282 -15136977 + B2_Mm2 SINE B2 5 78 -117 1 1633 760 196 7 0 chr5 137400442 137400585 -15136674 + B1_Mur1 SINE Alu 6 149 0 1 1633 348 289 47 122 chr5 137400652 137400865 -15136394 + ID_B1 SINE B4 2 198 -26 1 1633 663 139 8 50 chr5 137400808 137400929 -15136330 + B1_Mur4 SINE Alu 35 150 0 1 1633 336 194 30 0 chr5 137400940 137401007 -15136252 + ID_B1 SINE B4 155 223 -1 1 1633 1253 48 0 0 chr5 137401014 137401160 -15136099 + B1_Mus2 SINE Alu 2 147 0 1 1633 360 0 0 0 chr5 137401164 137401204 -15136055 + (CATA)n Simple_repeat Simple_repeat 2 41 0 1 1633 1422 78 10 16 chr5 137401205 137401399 -15135860 + B2_Mm2 SINE B2 1 193 -2 1 1633 189 107 0 0 chr5 137401400 137401428 -15135831 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1 1633 978 194 5 56 chr5 137401962 137402159 -15135100 + B3A SINE B2 2 188 -10 1 1633 288 224 0 141 chr5 137402180 137402237 -15135022 - MTEb LTR MaLR -34 345 296 1 1633 1392 113 55 18 chr5 137402237 137402454 -15134805 + URR1B DNA MER1_type 1 225 0 1 1633 288 243 3 136 chr5 137402454 137402518 -15134741 - MTEb LTR MaLR -84 295 220 1 1633 465 256 191 24 chr5 137402676 137402844 -15134415 + B3A SINE B2 1 196 -2 1 1633 888 196 0 0 chr5 137403145 137403293 -15133966 + B1_Mur1 SINE Alu 1 148 -1 1 1633 207 186 0 0 chr5 137403293 137403336 -15133923 + GA-rich Low_complexity Low_complexity 2 44 0 1 1633 570 149 50 42 chr5 137403770 137403889 -15133370 - PB1D9 SINE Alu 0 120 1 1 1633 888 157 2 2 chr5 137404188 137404629 -15132630 + (TG)n Simple_repeat Simple_repeat 1 441 0 1 1633 464 234 42 83 chr5 137404632 137404800 -15132459 - RSINE1 SINE B4 -2 163 3 1 1633 412 291 55 34 chr5 137405814 137405960 -15131299 - B1F SINE Alu 0 149 1 1 1633 428 273 9 18 chr5 137405932 137406044 -15131215 - PB1D10 SINE Alu -2 115 5 1 1633 304 326 34 54 chr5 137405936 137406085 -15131174 - B4A SINE B4 -96 196 51 1 1633 646 165 17 9 chr5 137406428 137406544 -15130715 + PB1D9 SINE Alu 1 117 -3 1 1633 362 309 135 0 chr5 137406797 137406923 -15130336 - ID_B1 SINE B4 -30 194 52 1 1633 203 344 120 25 chr5 137406943 137407143 -15130116 - L2b LINE L2 -41 3334 3116 1 1633 222 231 0 19 chr5 137407202 137407255 -15130004 - ID SINE ID -168 56 5 1 1633 292 201 15 5 chr5 137407434 137407511 -15129748 - PB1D10 SINE Alu -50 99 21 1 1633 231 220 169 0 chr5 137407470 137407529 -15129730 - B4A SINE B4 -146 146 78 1 1633 441 264 134 11 chr5 137408159 137408363 -15128896 - MTC LTR MaLR -14 407 174 1 1633 255 173 0 0 chr5 137408363 137408415 -15128844 + CT-rich Low_complexity Low_complexity 1 52 0 1 1633 1325 73 84 0 chr5 137408415 137408593 -15128666 - B2_Mm2 SINE B2 0 195 3 1 1633 382 264 33 0 chr5 137408618 137408709 -15128550 - B1F SINE Alu -43 106 13 1 1633 180 339 32 0 chr5 137408710 137408772 -15128487 + L2c LINE L2 3109 3172 -215 1 1633 552 68 14 0 chr5 137408821 137408894 -15128365 + LSU-rRNA_Hsa rRNA rRNA 2770 2843 -2192 1 1633 192 40 0 0 chr5 137409216 137409241 -15128018 + (GCTTG)n Simple_repeat Simple_repeat 2 26 0 1 1633 216 0 0 0 chr5 137409285 137409309 -15127950 + (ACGTG)n Simple_repeat Simple_repeat 1 24 0 1 1633 180 111 0 0 chr5 137409468 137409495 -15127764 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 1 1633 542 261 7 29 chr5 137410371 137410509 -15126750 + ID_B1 SINE B4 2 136 -88 1 1633 472 246 95 32 chr5 137410807 137410933 -15126326 + ID_B1 SINE B4 91 224 0 1 1633 1179 69 0 0 chr5 137411125 137411270 -15125989 - B1_Mus2 SINE Alu -1 146 2 1 1633 316 349 34 1 chr5 137411335 137411492 -15125767 - MIR SINE MIR -72 196 40 1 1633 325 188 16 0 chr5 137411983 137412047 -15125212 - ID4 SINE ID -18 65 1 1 1633 276 160 40 0 chr5 137412047 137412097 -15125162 - ZP3AR Satellite Satellite -117 95 44 1 1633 550 219 8 8 chr5 137412110 137412234 -15125025 - B1F SINE Alu -8 141 18 1 1633 1099 83 14 0 chr5 137413024 137413168 -15124091 - B1_Mus2 SINE Alu 0 147 2 1 1633 684 174 7 57 chr5 137413168 137413308 -15123951 - B1_Mur3 SINE Alu -12 137 5 1 1633 955 274 51 37 chr5 137413469 137413742 -15123517 - B4 SINE B4 0 292 16 1 1633 280 263 26 0 chr5 137413748 137413824 -15123435 - PB1D10 SINE Alu -38 79 2 1 1633 227 292 44 62 chr5 137413824 137413861 -15123398 - MT2B2 LTR ERVL -347 237 127 1 1633 1199 86 5 0 chr5 137413894 137414081 -15123178 + ZP3AR Satellite Satellite 14 201 -11 1 1633 352 212 0 0 chr5 137414081 137414147 -15123112 + ID4 SINE ID 1 66 -17 1 1633 821 71 0 0 chr5 137414553 137414666 -15122593 + B1_Mus1 SINE Alu 36 148 0 1 1633 1050 242 0 5 chr5 137415244 137415456 -15121803 - B3 SINE B2 -5 211 1 1 1633 183 180 0 0 chr5 137415490 137415506 -15121753 + (TG)n Simple_repeat Simple_repeat 1 16 0 1 1633 1288 27 0 0 chr5 137415506 137415652 -15121607 - B1_Mm SINE Alu -1 146 1 1 1633 183 180 0 0 chr5 137415652 137415685 -15121574 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1633 2891 224 47 51 chr5 137415899 137416798 -15120461 + RMER3D-int LTR ERVK 1947 2841 -1 1 1633 3044 77 9 7 chr5 137416799 137417219 -15120040 + BGLII LTR ERVK 1 421 0 1 1633 465 287 87 151 chr5 137417378 137417490 -15119769 + B4A SINE B4 1 92 -200 1 1633 1235 54 0 0 chr5 137417490 137417637 -15119622 + B1_Mus2 SINE Alu 1 147 0 1 1633 465 287 87 151 chr5 137417637 137417836 -15119423 + B4A SINE B4 93 292 0 1 1633 472 274 24 48 chr5 137417840 137418005 -15119254 + RSINE1 SINE B4 3 163 -2 1 1633 565 223 7 54 chr5 137418445 137418592 -15118667 - B4A SINE B4 -151 141 2 1 1633 417 239 86 36 chr5 137418600 137418739 -15118520 - ID_B1 SINE B4 -3 221 76 1 1633 574 162 86 0 chr5 137419082 137419187 -15118072 - B1_Mur2 SINE Alu 0 149 36 1 1633 306 261 34 11 chr5 137419467 137419556 -15117703 + MTE2a LTR MaLR 248 338 -41 1 1633 674 199 8 0 chr5 137419616 137419747 -15117512 - B1_Mur1 SINE Alu -9 140 9 1 1633 240 280 68 93 chr5 137419646 137419764 -15117495 - MT2B LTR ERVL -338 263 149 1 1633 1213 148 48 53 chr5 137419803 137420101 -15117158 + ZP3AR Satellite Satellite 1 296 0 1 1633 1253 28 0 0 chr5 137420101 137420243 -15117016 + B1_Mus2 SINE Alu 1 142 -5 1 1633 413 258 0 135 chr5 137420243 137420293 -15116966 + ZP3AR Satellite Satellite 142 186 -26 1 1633 662 312 6 6 chr5 137420253 137420427 -15116832 + B3A SINE B2 1 174 -24 1 1633 564 284 64 0 chr5 137420607 137420748 -15116511 + RSINE1 SINE B4 3 152 -13 1 1633 958 70 16 0 chr5 137421403 137421531 -15115728 - B1_Mus1 SINE Alu -18 130 1 1 1633 280 330 89 0 chr5 137421537 137421649 -15115610 - B3A SINE B2 -3 195 74 1 1633 418 143 138 32 chr5 137421667 137421761 -15115498 + B1_Mur4 SINE Alu 37 140 -10 1 1633 607 279 7 20 chr5 137421809 137421959 -15115300 + RSINE1 SINE B4 2 149 -16 1 1633 238 276 29 17 chr5 137422161 137422245 -15115014 - B3A SINE B2 -49 149 64 1 1633 1461 68 11 0 chr5 137422378 137422569 -15114690 - B2_Mm1t SINE B2 0 193 1 1 1633 206 32 32 0 chr5 137422569 137422600 -15114659 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 1 1633 745 91 90 83 chr5 137422601 137422745 -15114514 - B1_Mm SINE Alu -1 146 2 1 1633 363 259 0 0 chr5 137422958 137423033 -15114226 + B3A SINE B2 5 79 -119 1 1633 1308 158 145 83 chr5 137423033 137423324 -15113935 + ORR1B2 LTR MaLR 1 321 -46 1 1633 1200 49 14 0 chr5 137423324 137423468 -15113791 + B1_Mus2 SINE Alu 1 146 -1 1 1633 1308 158 145 83 chr5 137423468 137423514 -15113745 + ORR1B2 LTR MaLR 322 359 -8 1 1633 277 178 0 0 chr5 137423518 137423563 -15113696 + B3A SINE B2 75 119 -79 1 1633 516 191 136 0 chr5 137423682 137423792 -15113467 + B1_Mur2 SINE Alu 19 143 -6 1 1633 393 117 0 0 chr5 137423794 137423854 -15113405 + (GGAGA)n Simple_repeat Simple_repeat 2 61 0 1 1633 1318 106 27 150 chr5 137423861 137424161 -15113098 + ORR1A4 LTR MaLR 1 263 -66 1 1633 4301 107 122 35 chr5 137424161 137424523 -15112736 + Lx4A LINE L1 6216 6607 -451 1 1633 1059 91 35 0 chr5 137424523 137424666 -15112593 - B1_Mus1 SINE Alu 0 148 1 1 1633 4301 107 122 35 chr5 137424666 137425066 -15112193 + Lx4A LINE L1 6608 7044 -14 1 1633 393 72 81 54 chr5 137425066 137425140 -15112119 + ORR1A4 LTR MaLR 254 329 0 1 1633 1295 31 0 0 chr5 137425169 137425329 -15111930 + B2_Mm1a SINE B2 1 160 -33 1 1633 288 0 0 0 chr5 137425329 137425361 -15111898 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1 1633 411 248 18 44 chr5 137425377 137425491 -15111768 - MTE2a LTR MaLR -268 111 1 1 1633 1929 76 69 3 chr5 137425626 137425915 -15111344 + IAPLTR2b LTR ERVK 1 308 -19 1 1633 189 0 0 0 chr5 137425949 137425970 -15111289 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1 1633 687 157 62 8 chr5 137426024 137426152 -15111107 - B1_Mur4 SINE Alu -13 137 3 1 1633 942 41 0 0 chr5 137426303 137426424 -15110835 + B1_Mus2 SINE Alu 1 121 -26 1 1633 710 287 15 10 chr5 137426425 137426622 -15110637 + B3 SINE B2 19 216 0 1 1633 696 234 70 16 chr5 137427573 137427760 -15109499 + B4 SINE B4 2 198 -94 1 1633 473 262 13 72 chr5 137428077 137428229 -15109030 + B1_Mur1 SINE Alu 7 149 0 1 1633 357 292 26 156 chr5 137428229 137428293 -15108966 + B4A SINE B4 92 278 -14 1 1633 2475 75 121 11 chr5 137428293 137428672 -15108587 + BGLII LTR ERVK 1 421 0 1 1633 357 292 26 156 chr5 137428672 137428686 -15108573 + B4A SINE B4 279 292 0 1 1633 24 53 0 0 chr5 137428693 137428731 -15108528 + AT_rich Low_complexity Low_complexity 1 38 0 1 1633 378 289 0 10 chr5 137428752 137428850 -15108409 - RSINE1 SINE B4 -58 107 11 1 1633 270 0 0 0 chr5 137429518 137429548 -15107711 + (T)n Simple_repeat Simple_repeat 1 30 0 1 1633 579 202 0 9 chr5 137429548 137429658 -15107601 - PB1D10 SINE Alu 0 117 9 1 1633 221 0 0 33 chr5 137429919 137429949 -15107310 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1 1633 986 71 42 7 chr5 137429949 137430080 -15107179 - B1_Mm SINE Alu -10 137 1 1 1633 231 350 22 34 chr5 137430555 137430656 -15106603 + PB1D10 SINE Alu 1 106 -14 1 1633 315 321 7 76 chr5 137430665 137430810 -15106449 + B4A SINE B4 6 140 -152 1 1633 213 205 0 0 chr5 137430839 137430878 -15106381 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1633 991 229 19 5 chr5 137430909 137431120 -15106139 + B3 SINE B2 2 215 -1 1 1633 1203 196 193 16 chr5 137431558 137431874 -15105385 + MTD LTR MaLR 1 372 -47 1 1633 366 178 96 0 chr5 137431888 137431961 -15105298 + RSINE1 SINE B4 24 103 -62 1 1633 306 210 24 36 chr5 137431951 137432035 -15105224 - RLTR11A LTR ERVK -445 83 1 1 1633 625 231 57 53 chr5 137432036 137432264 -15104995 - MYSERV-int LTR ERVK -2 6548 6320 1 1633 895 184 41 21 chr5 137432331 137432525 -15104734 - MYSERV6-int LTR ERVK -177 8782 8585 1 1633 674 284 12 6 chr5 137432649 137432728 -15104531 + ID SINE ID 4 83 -141 1 1633 341 269 32 11 chr5 137432728 137432822 -15104437 + PB1D7 SINE Alu 4 99 -21 1 1633 280 307 24 100 chr5 137432888 137433058 -15104201 + RSINE1 SINE B4 3 159 -6 1 1633 320 262 107 0 chr5 137433353 137433437 -15103822 - ID_B1 SINE B4 -131 93 1 1 1633 417 217 22 0 chr5 137433395 137433487 -15103772 - ZP3AR Satellite Satellite -74 138 45 1 1633 222 37 0 0 chr5 137433488 137433515 -15103744 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1633 636 237 61 0 chr5 137433515 137433646 -15103613 - B1F2 SINE Alu -10 139 1 1 1633 996 246 20 5 chr5 137433684 137433888 -15103371 + B3 SINE B2 4 210 -6 1 1633 379 239 39 0 chr5 137433897 137434055 -15103204 - B3 SINE B2 0 216 8 1 1633 1314 40 9 4 chr5 137434062 137434288 -15102971 + (TCTCCC)n Simple_repeat Simple_repeat 1 227 0 1 1633 238 363 26 9 chr5 137434306 137434420 -15102839 - ID_B1 SINE B4 -1 223 108 1 1633 635 237 23 0 chr5 137434691 137434822 -15102437 - RSINE1 SINE B4 -20 145 12 1 1633 214 284 24 24 chr5 137434819 137434902 -15102357 - ID2 SINE ID 0 83 1 1 1633 264 264 239 8 chr5 137435017 137435147 -15102112 - MER21B LTR ERV1 -137 726 567 1 1633 416 271 30 37 chr5 137435350 137435484 -15101775 - MER21B LTR ERV1 -605 258 126 1 1633 598 246 49 7 chr5 137435573 137435716 -15101543 + B1_Mur1 SINE Alu 1 149 0 1 1633 1575 57 0 0 chr5 137435719 137435911 -15101348 + B2_Mm1a SINE B2 2 193 0 1 1633 481 330 33 28 chr5 137435982 137436163 -15101096 - B3 SINE B2 0 216 35 1 1633 293 188 0 0 chr5 137436175 137436223 -15101036 + ORR1B2 LTR MaLR 312 359 -8 1 1633 277 182 0 0 chr5 137436227 137436271 -15100988 + B3A SINE B2 75 118 -80 1 1633 1485 67 0 35 chr5 137436367 137436567 -15100692 - B2_Mm2 SINE B2 -1 194 2 1 1633 469 196 37 9 chr5 137436873 137436981 -15100278 - ID_B1 SINE B4 -28 196 86 1 1633 239 275 220 0 chr5 137436982 137437091 -15100168 + L2a LINE L2 3294 3426 0 1 1633 1024 126 114 16 chr5 137437210 137437400 -15099859 + MTC LTR MaLR 1 209 -212 1 1633 368 108 46 0 chr5 137437400 137437465 -15099794 + PB1D9 SINE Alu 1 68 -52 1 1633 436 268 227 29 chr5 137439228 137439470 -15097789 + B4A SINE B4 3 292 0 1 1633 450 188 9 47 chr5 137439658 137439764 -15097495 + ID_B1 SINE B4 117 218 -6 1 1633 280 268 40 28 chr5 137440174 137440282 -15096977 + PB1D9 SINE Alu 2 110 -10 1 1633 817 144 0 46 chr5 137440384 137440537 -15096722 + B1_Mus2 SINE Alu 2 147 0 1 1633 390 248 163 52 chr5 137440536 137440689 -15096570 + ID_B1 SINE B4 15 184 -40 1 1633 351 0 0 0 chr5 137441593 137441632 -15095627 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1633 204 286 0 0 chr5 137445628 137445670 -15091589 + (CACG)n Simple_repeat Simple_repeat 1 42 0 1 1633 555 256 51 0 chr5 137445670 137445807 -15091452 - B1F1 SINE Alu -5 144 1 1 1633 508 278 21 7 chr5 137446081 137446226 -15091033 - ZP3AR Satellite Satellite -21 191 45 1 1633 411 245 18 28 chr5 137446242 137446351 -15090908 - PB1D10 SINE Alu -8 109 2 1 1633 323 258 20 40 chr5 137446921 137447000 -15090259 + ID_B1 SINE B4 86 161 -63 1 1633 1228 62 0 0 chr5 137447000 137447146 -15090113 - B1_Mus2 SINE Alu 0 147 2 1 1633 323 258 20 40 chr5 137447146 137447167 -15090092 + ID_B1 SINE B4 162 183 -41 1 1633 240 163 0 0 chr5 137447167 137447210 -15090049 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 1 1633 455 200 44 11 chr5 137447211 137447302 -15089957 + B1_Mus2 SINE Alu 43 136 -11 1 1633 705 82 0 0 chr5 137447315 137447412 -15089847 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 1 1633 340 335 58 19 chr5 137447574 137447781 -15089478 + RMER15 LTR ERVL 343 557 -18 1 1633 574 269 33 7 chr5 137447785 137447935 -15089324 + ID_B1 SINE B4 56 209 -15 1 1633 410 183 17 17 chr5 137448637 137448754 -15088505 + (CATA)n Simple_repeat Simple_repeat 4 120 0 1 1633 695 176 23 17 chr5 137448760 137448933 -15088326 + (CATATA)n Simple_repeat Simple_repeat 6 179 0 1 1633 326 183 14 27 chr5 137448933 137449006 -15088253 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1633 337 231 250 0 chr5 137449984 137450092 -15087167 + B1F SINE Alu 9 143 -6 1 1633 386 244 23 0 chr5 137450008 137450094 -15087165 + ID_B1 SINE B4 133 220 -4 1 1633 195 42 0 0 chr5 137450227 137450251 -15087008 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1633 692 306 92 4 chr5 137451192 137451454 -15085805 + B4A SINE B4 1 285 -7 1 1633 515 274 82 27 chr5 137451716 137451900 -15085359 - B3A SINE B2 -4 194 1 1 1633 1222 36 0 0 chr5 137451971 137452110 -15085149 + B1_Mus2 SINE Alu 1 139 -8 1 1633 298 0 23 23 chr5 137452110 137452153 -15085106 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1 1633 955 68 14 0 chr5 137452170 137452314 -15084945 + B1_Mur4 SINE Alu 4 150 0 1 1633 239 95 48 0 chr5 137452358 137452400 -15084859 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1633 460 216 145 8 chr5 137452722 137452839 -15084420 + ID_B1 SINE B4 84 216 -8 1 1633 361 235 11 23 chr5 137452859 137452946 -15084313 + B4 SINE B4 6 91 -201 1 1633 962 139 7 0 chr5 137452948 137453092 -15084167 + B1_Mur4 SINE Alu 1 145 -5 1 1633 289 221 90 13 chr5 137453119 137453197 -15084062 + B4A SINE B4 82 165 -127 1 1633 396 174 31 20 chr5 137453274 137453360 -15083899 - MTD LTR MaLR -21 398 263 1 1633 441 261 41 32 chr5 137453409 137453532 -15083727 - MTD LTR MaLR -288 131 8 1 1633 453 90 0 0 chr5 137453552 137453619 -15083640 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1633 186 43 0 0 chr5 137453619 137453641 -15083618 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 1 1633 714 144 98 0 chr5 137453957 137454089 -15083170 - B1_Mur4 SINE Alu 0 150 6 1 1633 749 280 33 0 chr5 137454128 137454339 -15082920 - Lx6 LINE L1 -26 7434 7217 1 1633 2008 118 12 41 chr5 137454342 137454687 -15082572 - IAPEY_LTR LTR ERVK 0 385 51 1 1633 680 263 141 32 chr5 137454688 137454756 -15082503 - Lx5 LINE L1 -221 6829 6747 1 1633 1923 123 14 74 chr5 137454756 137455106 -15082153 - ORR1A4 LTR MaLR 0 329 1 1 1633 680 263 141 32 chr5 137455106 137455257 -15082002 - Lx5 LINE L1 -304 6746 6587 1 1633 368 194 296 0 chr5 137455289 137455387 -15081872 - RSINE1 SINE B4 -36 129 3 1 1633 376 237 73 48 chr5 137455919 137456043 -15081216 + B1F SINE Alu 23 149 0 1 1633 1136 82 7 0 chr5 137456052 137456198 -15081061 + B1_Mus1 SINE Alu 2 148 0 1 1633 248 376 0 0 chr5 137456213 137456298 -15080961 + ZP3AR Satellite Satellite 50 134 -78 1 1633 905 191 0 0 chr5 137456440 137456587 -15080672 + B1_Mus2 SINE Alu 1 147 0 1 1633 711 213 15 0 chr5 137456636 137456772 -15080487 + RSINE1 SINE B4 3 140 -25 1 1633 189 0 0 0 chr5 137456778 137456799 -15080460 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1633 319 315 38 30 chr5 137456879 137457010 -15080249 + 7SK RNA RNA 40 171 -160 1 1633 952 212 33 14 chr5 137457033 137457243 -15080016 - B3 SINE B2 -1 215 2 1 1633 461 298 25 0 chr5 137457243 137457364 -15079895 + 7SK RNA RNA 165 288 -43 1 1633 453 283 64 98 chr5 137457371 137457683 -15079576 + B4 SINE B4 9 277 -15 1 1633 261 290 34 86 chr5 137457763 137457880 -15079379 + B1_Mur1 SINE Alu 32 142 -7 1 1633 312 48 0 0 chr5 137458653 137458695 -15078564 + (C)n Simple_repeat Simple_repeat 1 42 0 1 1633 466 259 26 8 chr5 137458991 137459108 -15078151 - ID_B1 SINE B4 -1 223 105 1 1633 504 271 0 8 chr5 137459119 137459238 -15078021 - B1F SINE Alu -2 147 30 1 1633 191 128 103 0 chr5 137459262 137459301 -15077958 - MIR SINE MIR -110 152 110 1 1633 493 210 76 0 chr5 137459495 137459614 -15077645 + RSINE1 SINE B4 3 130 -35 1 1633 685 139 35 0 chr5 137459658 137459773 -15077486 + PB1D9 SINE Alu 2 120 0 1 1633 189 0 0 0 chr5 137460129 137460150 -15077109 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 1 1633 620 190 40 0 chr5 137460150 137460274 -15076985 - B1_Mus1 SINE Alu -13 135 6 1 1633 225 65 0 0 chr5 137460275 137460306 -15076953 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1633 426 333 38 6 chr5 137460452 137460609 -15076650 + RSINE1 SINE B4 2 163 -2 1 1633 629 207 88 94 chr5 137461139 137461331 -15075928 + B3A SINE B2 4 194 -4 1 1633 314 312 26 9 chr5 137461681 137461794 -15075465 - ID_B1 SINE B4 -109 115 1 1 1633 666 259 30 37 chr5 137461837 137462001 -15075258 - RSINE1 SINE B4 0 165 3 1 1633 216 184 0 0 chr5 137462159 137462197 -15075062 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1633 926 107 42 28 chr5 137462275 137462419 -15074840 + B1_Mur4 SINE Alu 5 150 0 1 1633 23 54 0 0 chr5 137463122 137463159 -15074100 + GC_rich Low_complexity Low_complexity 1 37 0 1 1633 189 121 0 0 chr5 137463586 137463619 -15073640 + (CTG)n Simple_repeat Simple_repeat 3 35 0 1 1633 198 0 0 0 chr5 137463890 137463912 -15073347 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1633 330 104 0 0 chr5 137465173 137465221 -15072038 + ZP3AR Satellite Satellite 48 95 -117 1 1633 451 235 0 0 chr5 137465223 137465304 -15071955 + ID4_ SINE ID 3 83 0 1 1633 491 262 24 0 chr5 137467844 137467970 -15069289 + B1F1 SINE Alu 21 149 0 1 1633 264 253 40 0 chr5 137467975 137468050 -15069209 + B4A SINE B4 2 79 -213 1 1633 341 326 32 52 chr5 137468065 137468220 -15069039 + B4A SINE B4 140 291 -1 1 1633 311 295 18 131 chr5 137468278 137468299 -15068960 + ID_B1 SINE B4 75 191 -33 1 1633 330 252 42 112 chr5 137468299 137468400 -15068859 + B1F SINE Alu 12 113 -36 1 1633 1437 84 16 0 chr5 137468400 137468590 -15068669 + B2_Mm2 SINE B2 1 193 -2 1 1633 330 252 42 112 chr5 137468590 137468631 -15068628 + B1F SINE Alu 114 144 -5 1 1633 939 239 41 23 chr5 137468641 137468859 -15068400 + ID_B1 SINE B4 2 223 -1 1 1633 1504 215 62 25 chr5 137469289 137469642 -15067617 - MTE2b LTR MaLR -13 366 1 1 1633 470 226 105 0 chr5 137469805 137469938 -15067321 + B1_Mur4 SINE Alu 2 148 0 1 1633 462 206 88 0 chr5 137470341 137470443 -15066816 + PB1D7 SINE Alu 2 112 -8 1 1633 1026 202 48 9 chr5 137470452 137470662 -15066597 + ID_B1 SINE B4 1 218 -6 1 1633 1852 202 35 15 chr5 137471078 137471484 -15065775 - MTD LTR MaLR -5 414 1 1 1633 1076 250 124 21 chr5 137471530 137471861 -15065398 - MTEb LTR MaLR -14 365 1 1 1633 21 0 0 0 chr5 137472489 137472510 -15064749 + AT_rich Low_complexity Low_complexity 1 21 0 1 1633 763 215 5 97 chr5 137472548 137472744 -15064515 - B3A SINE B2 -16 182 5 1 1633 317 222 21 43 chr5 137473590 137473684 -15063575 - B4A SINE B4 -199 93 2 1 1633 189 0 0 0 chr5 137474277 137474298 -15062961 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 1 1633 1198 48 7 0 chr5 137475263 137475410 -15061849 + B1_Mus1 SINE Alu 1 148 0 1 1633 198 0 0 0 chr5 137475410 137475432 -15061827 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1633 1631 32 16 0 chr5 137475881 137476070 -15061189 + B2_Mm1a SINE B2 2 193 0 1 1633 518 256 70 20 chr5 137476720 137476919 -15060340 - B4A SINE B4 -76 216 8 1 1633 1266 62 6 0 chr5 137477271 137477447 -15059812 + B2_Mm1t SINE B2 11 187 -6 1 1633 1439 65 5 16 chr5 137477455 137477643 -15059616 + B2_Mm2 SINE B2 1 186 -9 1 1633 339 302 150 8 chr5 137477690 137477817 -15059442 - RSINE1 SINE B4 -17 148 4 1 1633 1178 254 126 6 chr5 137478086 137478427 -15058832 + MTD LTR MaLR 26 407 -12 1 1633 712 244 56 12 chr5 137478906 137479068 -15058191 - ID_B1 SINE B4 -3 221 53 1 1633 364 148 27 18 chr5 137479068 137479178 -15058081 + (TA)n Simple_repeat Simple_repeat 1 111 0 1 1633 378 0 0 0 chr5 137479501 137479543 -15057716 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1633 490 244 138 0 chr5 137479545 137479668 -15057591 - B3A SINE B2 -56 142 3 1 1633 4606 127 47 11 chr5 137479733 137480463 -15056796 - RMER6A LTR ERVK 0 756 1 1 1633 626 252 16 0 chr5 137480597 137480724 -15056535 - B3 SINE B2 -36 180 52 1 1633 239 322 11 22 chr5 137480744 137480836 -15056423 - B4 SINE B4 -200 92 2 1 1633 217 312 12 12 chr5 137480836 137480857 -15056402 + ID_B1 SINE B4 60 140 -84 1 1633 222 203 0 17 chr5 137480857 137480917 -15056342 + B1F1 SINE Alu 1 59 -90 1 1633 1242 171 29 0 chr5 137481672 137481882 -15055377 + B3 SINE B2 1 216 0 1 1633 550 229 7 121 chr5 137482163 137482312 -15054947 - B1_Mur1 SINE Alu -6 143 12 1 1633 861 135 0 0 chr5 137482377 137482510 -15054749 + B1_Mur3 SINE Alu 17 149 0 1 1633 222 195 0 0 chr5 137482688 137482729 -15054530 + PB1D10 SINE Alu 31 71 -46 1 1633 956 297 126 37 chr5 137482931 137483430 -15053829 + Lx8 LINE L1 6666 7220 -253 1 1633 1520 48 21 0 chr5 137483430 137483619 -15053640 - B2_Mm2 SINE B2 -1 194 2 1 1633 956 300 69 44 chr5 137483619 137483876 -15053383 + Lx8 LINE L1 7221 7472 -1 1 1633 1259 192 34 22 chr5 137484039 137484363 -15052896 - RLTR20B3 LTR ERVK -14 563 236 1 1633 382 230 68 29 chr5 137484406 137484509 -15052750 + PB1D7 SINE Alu 1 107 -13 1 1633 504 0 0 0 chr5 137484511 137484567 -15052692 + (TAA)n Simple_repeat Simple_repeat 2 57 0 1 1633 295 341 36 43 chr5 137484575 137484713 -15052546 - LTR78 LTR ERV1 -33 1271 1135 1 1633 766 211 155 16 chr5 137484724 137484917 -15052342 - ID_B1 SINE B4 -3 221 2 1 1633 405 0 0 0 chr5 137484937 137484982 -15052277 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1633 393 257 10 29 chr5 137485048 137485152 -15052107 - B4A SINE B4 -88 204 103 1 1633 527 266 84 6 chr5 137485332 137485479 -15051780 - ID_B1 SINE B4 -47 245 81 1 1633 594 63 0 0 chr5 137485493 137485572 -15051687 + (TCCC)n Simple_repeat Simple_repeat 3 81 0 1 1633 285 307 23 10 chr5 137485623 137485729 -15051530 - B1F SINE Alu -1 119 17 1 1633 409 212 0 17 chr5 137485747 137485862 -15051397 + C-rich Low_complexity Low_complexity 5 117 0 1 1633 472 220 10 12 chr5 137486130 137486248 -15051011 - PB1D9 SINE Alu -32 117 2 1 1633 340 253 0 12 chr5 137486184 137486264 -15050995 - B4 SINE B4 -142 150 72 1 1633 375 266 0 50 chr5 137486265 137486364 -15050895 - PB1D10 SINE Alu -1 116 23 1 1633 750 174 65 0 chr5 137486519 137486657 -15050602 + B1_Mus1 SINE Alu 2 148 0 1 1633 348 317 10 0 chr5 137486795 137486896 -15050363 + PB1D10 SINE Alu 2 103 -14 1 1633 911 234 43 16 chr5 137487020 137487207 -15050052 - B3A SINE B2 -6 192 1 1 1633 726 199 7 0 chr5 137487412 137487548 -15049711 + B1_Mur1 SINE Alu 6 142 -7 1 1633 396 238 61 29 chr5 137487559 137487676 -15049583 + RSINE1 SINE B4 7 138 -27 1 1633 270 0 0 0 chr5 137487689 137487719 -15049540 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1633 300 154 0 0 chr5 137487725 137487777 -15049482 + GA-rich Low_complexity Low_complexity 1 52 0 1 1633 1218 61 0 0 chr5 137487866 137488013 -15049246 + B1_Mus1 SINE Alu 2 148 0 1 1633 892 148 21 0 chr5 137488056 137488198 -15049061 + B1_Mur4 SINE Alu 5 149 -1 1 1633 246 284 67 22 chr5 137488471 137488561 -15048698 - MIRb SINE MIR -10 258 165 1 1633 240 111 0 0 chr5 137488740 137488776 -15048483 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1633 850 129 68 0 chr5 137488776 137488908 -15048351 - B1_Mur4 SINE Alu -6 144 4 1 1633 456 273 46 88 chr5 137488971 137489188 -15048071 + ID_B1 SINE B4 4 211 -13 1 1633 471 164 90 128 chr5 137489437 137489570 -15047689 - B1_Mus1 SINE Alu -2 146 19 1 1633 1342 160 19 5 chr5 137489576 137489789 -15047470 - B3 SINE B2 0 216 1 1 1633 354 290 0 20 chr5 137489816 137489918 -15047341 + ID_B1 SINE B4 76 175 -49 1 1633 476 259 0 35 chr5 137489829 137489945 -15047314 + PB1D10 SINE Alu 6 117 0 1 1633 451 286 10 96 chr5 137490012 137490209 -15047050 - B3A SINE B2 0 198 19 1 1633 492 287 7 7 chr5 137490216 137490353 -15046906 - ID_B1 SINE B4 0 224 88 1 1633 228 67 0 0 chr5 137490357 137490387 -15046872 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 1 1633 740 158 15 22 chr5 137490387 137490523 -15046736 - B1_Mus2 SINE Alu -1 146 12 1 1633 1041 285 95 3 chr5 137490557 137490884 -15046375 + ORR1E LTR MaLR 3 359 0 1 1633 267 328 33 33 chr5 137490906 137491026 -15046233 - ORR1E LTR MaLR -222 137 18 1 1633 822 48 0 0 chr5 137491027 137491130 -15046129 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 1 1633 1214 55 0 0 chr5 137491130 137491275 -15045984 - B1_Mus2 SINE Alu -2 145 1 1 1633 554 204 0 9 chr5 137491379 137491481 -15045778 - MTEb LTR MaLR 0 379 279 1 1633 1258 240 85 35 chr5 137491481 137491822 -15045437 + MTEa LTR MaLR 3 360 -19 1 1633 414 199 40 5 chr5 137491856 137491959 -15045300 - MTEb LTR MaLR -271 103 2 1 1633 216 232 35 18 chr5 137492133 137492190 -15045069 + ID4_ SINE ID 5 62 -21 1 1633 378 0 0 0 chr5 137492198 137492240 -15045019 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1633 216 158 0 0 chr5 137492242 137492280 -15044979 + GA-rich Low_complexity Low_complexity 3 40 0 1 1633 465 19 0 0 chr5 137492334 137492388 -15044871 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1633 264 167 0 0 chr5 137492392 137492440 -15044819 + GA-rich Low_complexity Low_complexity 2 49 0 1 1633 1170 117 0 0 chr5 137492498 137492677 -15044582 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1633 204 158 0 0 chr5 137492677 137492715 -15044544 + (CATA)n Simple_repeat Simple_repeat 3 40 0 1 1633 1044 106 0 32 chr5 137492715 137492901 -15044358 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1633 569 203 22 66 chr5 137492914 137493051 -15044208 + B3 SINE B2 86 216 0 1 1633 545 189 92 11 chr5 137493474 137493611 -15043648 - B1_Mus1 SINE Alu -1 149 1 1 1633 405 0 0 0 chr5 137493617 137493662 -15043597 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1633 535 149 53 0 chr5 137493662 137493756 -15043503 - B1_Mur1 SINE Alu -6 143 45 1 1633 223 207 172 97 chr5 137493789 137493923 -15043336 - B3 SINE B2 0 216 73 1 1633 537 227 33 16 chr5 137493919 137494040 -15043219 - B3A SINE B2 -75 123 1 1 1633 921 107 14 0 chr5 137494087 137494227 -15043032 + B1_Mur4 SINE Alu 9 150 0 1 204 1389 59 0 0 chr5 137494486 137494690 -15042569 + (TTCC)n Simple_repeat Simple_repeat 1 204 0 1 1634 906 134 42 0 chr5 137495001 137495143 -15042116 + B1_Mur4 SINE Alu 3 150 0 1 1634 369 40 0 0 chr5 137495329 137495379 -15041880 - U6 snRNA snRNA -57 50 1 1 1634 495 279 36 54 chr5 137495457 137495624 -15041635 + RSINE1 SINE B4 2 165 0 1 1634 710 163 11 22 chr5 137495627 137496108 -15041151 + (CA)n Simple_repeat Simple_repeat 1 475 0 1 1634 799 240 0 7 chr5 137496129 137496280 -15040979 + RSINE1 SINE B4 2 151 -14 1 1634 3304 121 259 5 chr5 137496308 137496896 -15040363 + RMER19A LTR ERVK 1 737 0 1 1634 392 266 0 31 chr5 137497257 137497354 -15039905 - RSINE1 SINE B4 -70 95 2 1 1634 600 248 0 0 chr5 137497670 137497795 -15039464 - B1_Mur1 SINE Alu -2 147 23 1 1634 1412 75 21 0 chr5 137497808 137497995 -15039264 + B2_Mm2 SINE B2 2 192 -3 1 1634 28 48 0 0 chr5 137498017 137498059 -15039200 + AT_rich Low_complexity Low_complexity 1 42 0 1 1634 584 233 51 104 chr5 137498146 137498465 -15038794 - MTE2a LTR MaLR -6 373 1 1 1634 216 0 0 0 chr5 137498519 137498543 -15038716 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1634 702 281 34 6 chr5 137498583 137498762 -15038497 - Lx8 LINE L1 -189 7284 7101 1 1634 21 0 0 0 chr5 137498913 137498934 -15038325 + AT_rich Low_complexity Low_complexity 1 21 0 1 1634 656 180 0 69 chr5 137498934 137498957 -15038302 + B3A SINE B2 1 20 -178 1 1634 1240 187 32 0 chr5 137498957 137499176 -15038083 - URR1A DNA MER1_type 0 226 1 1 1634 656 204 8 95 chr5 137499176 137499354 -15037905 + B3A SINE B2 21 179 -16 1 1634 1616 47 11 0 chr5 137499595 137499785 -15037474 - B2_Mm1t SINE B2 0 193 2 1 1634 216 125 50 0 chr5 137499786 137499826 -15037433 - B3 SINE B2 -174 42 1 1 1634 718 121 181 24 chr5 137499833 137499960 -15037299 - B1_Mus1 SINE Alu 0 148 2 1 1634 560 274 64 18 chr5 137500000 137500171 -15037088 - ID_B1 SINE B4 -45 179 1 1 1634 393 86 0 0 chr5 137501794 137501852 -15035407 + (TG)n Simple_repeat Simple_repeat 2 59 0 2 1634 347 212 0 48 chr5 137502782 137502866 -15034393 + BC1_Mm scRNA scRNA 2 81 -71 3 1634 793 200 37 58 chr5 137502793 137502984 -15034275 + ID_B1 SINE B4 11 197 -27 4 1634 522 0 0 0 chr5 137503594 137503652 -15033607 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1634 237 83 0 0 chr5 137504246 137504282 -15032977 + (TTG)n Simple_repeat Simple_repeat 3 38 0 6 1634 318 26 0 0 chr5 137504547 137504586 -15032673 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1634 211 358 18 24 chr5 137504802 137504971 -15032288 + C-rich Low_complexity Low_complexity 5 172 0 8 1634 231 229 0 16 chr5 137505821 137505883 -15031376 + (TTCA)n Simple_repeat Simple_repeat 4 64 0 9 1634 234 0 0 0 chr5 137505910 137505936 -15031323 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 9 1634 262 211 9 9 chr5 137507937 137508052 -15029207 + GA-rich Low_complexity Low_complexity 1 115 0 1 1634 200 267 0 0 chr5 137508150 137508210 -15029049 + GA-rich Low_complexity Low_complexity 1 60 0 1 1634 209 287 6 60 chr5 137508694 137508861 -15028398 + (CCCCG)n Simple_repeat Simple_repeat 3 160 0 1 1634 539 263 38 32 chr5 137509404 137509561 -15027698 + RSINE1 SINE B4 2 159 -6 1 1634 539 221 8 16 chr5 137510335 137510459 -15026800 + ID_B1 SINE B4 86 208 -16 1 1634 295 289 10 30 chr5 137510482 137510582 -15026677 + PB1D10 SINE Alu 13 110 -7 1 1634 1073 268 17 40 chr5 137512495 137512791 -15024468 + B4A SINE B4 2 290 -2 1 1634 363 156 54 15 chr5 137512806 137512936 -15024323 + (CAGA)n Simple_repeat Simple_repeat 2 136 0 1 1634 180 0 0 0 chr5 137513249 137513269 -15023990 + (TCC)n Simple_repeat Simple_repeat 2 21 0 1 1634 659 254 116 5 chr5 137513498 137513688 -15023571 - ID_B1 SINE B4 -13 211 1 1 1634 411 193 45 2 chr5 137513740 137513836 -15023423 - PB1D10 SINE Alu -16 104 4 2 1634 188 309 118 27 chr5 137513953 137514140 -15023119 + MIRc SINE MIR 3 207 -61 2 1634 310 269 0 97 chr5 137514150 137514253 -15023006 + PB1D7 SINE Alu 28 120 0 2 1634 385 144 13 0 chr5 137514399 137514475 -15022784 + Lx4B LINE L1 6529 6607 -451 2 1634 849 35 52 0 chr5 137514518 137514634 -15022625 - B1_Mus1 SINE Alu -25 123 2 2 1634 321 311 47 39 chr5 137514634 137514664 -15022595 - B4A SINE B4 -195 97 67 2 1634 1954 170 29 11 chr5 137514664 137515045 -15022214 + Lx4B LINE L1 6623 7010 -48 2 1634 1744 122 39 143 chr5 137515084 137515496 -15021763 + ORR1C2 LTR MaLR 16 384 0 2 1634 265 269 122 65 chr5 137515496 137515598 -15021661 + ID_B1 SINE B4 33 141 -83 2 1634 214 256 114 13 chr5 137515552 137515631 -15021628 + B1_Mur1 SINE Alu 63 149 0 2 1634 897 115 6 75 chr5 137515633 137515793 -15021466 + B1_Mur4 SINE Alu 1 149 -1 3 1634 410 156 26 0 chr5 137516105 137516182 -15021077 - B3 SINE B2 0 216 138 3 1634 369 261 67 34 chr5 137516159 137516278 -15020981 + B4 SINE B4 30 152 -140 3 1634 458 309 63 47 chr5 137516371 137516561 -15020698 + B3A SINE B2 1 193 -5 3 1634 667 185 0 8 chr5 137516572 137516692 -15020567 + B1_Mur1 SINE Alu 16 134 -15 3 1634 821 94 24 0 chr5 137516708 137516835 -15020424 + (TTTTC)n Simple_repeat Simple_repeat 3 132 0 3 1634 1097 43 65 0 chr5 137516844 137516982 -15020277 - B1_Mm SINE Alu 0 147 1 3 1634 803 184 191 48 chr5 137516984 137517172 -15020087 - B3 SINE B2 0 216 2 3 1634 442 185 18 18 chr5 137517204 137517314 -15019945 + GA-rich Low_complexity Low_complexity 3 112 0 3 1634 228 242 0 57 chr5 137517324 137517394 -15019865 + B4 SINE B4 226 291 -1 3 1634 474 179 35 62 chr5 137518155 137518268 -15018991 - B1_Mur2 SINE Alu -1 148 39 3 1634 214 26 51 26 chr5 137518276 137518315 -15018944 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 4 1634 634 228 136 30 chr5 137518317 137518331 -15018928 - ID_B1 SINE B4 0 224 211 4 1634 441 0 0 0 chr5 137518331 137518380 -15018879 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 4 1634 1123 50 0 21 chr5 137518382 137518526 -15018733 - B1_Mus1 SINE Alu -6 142 2 4 1634 244 45 21 43 chr5 137518526 137518573 -15018686 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 4 1634 634 228 136 30 chr5 137518573 137518753 -15018506 - ID_B1 SINE B4 -14 210 8 4 1634 188 235 130 56 chr5 137519313 137519367 -15017892 + MIRb SINE MIR 52 109 -159 4 1634 376 289 127 0 chr5 137519377 137519519 -15017740 + RSINE1 SINE B4 4 163 -2 4 1634 604 224 0 31 chr5 137519562 137519691 -15017568 - RSINE1 SINE B4 -29 136 12 4 1634 845 182 173 17 chr5 137519803 137519982 -15017277 - B3 SINE B2 -6 210 4 4 1634 1142 82 0 0 chr5 137520416 137520563 -15016696 - B1_Mus2 SINE Alu 0 147 1 4 1634 453 234 180 14 chr5 137520602 137520741 -15016518 - RSINE1 SINE B4 -1 164 3 5 1634 495 282 21 7 chr5 137520750 137520893 -15016366 - ID_B1 SINE B4 0 224 80 5 1634 272 235 30 0 chr5 137522428 137522499 -15014760 + B4A SINE B4 65 142 -150 5 1634 189 0 0 0 chr5 137522557 137522578 -15014681 + (CAA)n Simple_repeat Simple_repeat 1 21 0 5 1634 375 241 0 44 chr5 137522626 137522717 -15014542 + RSINE1 SINE B4 66 152 -13 5 1634 360 103 0 0 chr5 137522717 137522775 -15014484 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1634 303 280 11 21 chr5 137523051 137523146 -15014113 + PB1D10 SINE Alu 1 94 -23 5 1634 477 0 0 0 chr5 137523148 137523201 -15014058 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1634 338 311 57 43 chr5 137523204 137523345 -15013914 + ID_B1 SINE B4 81 223 -1 5 1634 337 258 5 51 chr5 137523367 137523479 -15013780 + B1F SINE Alu 1 104 -44 5 1634 1192 75 0 0 chr5 137523479 137523626 -15013633 + B1_Mus1 SINE Alu 1 147 -1 6 1634 223 290 67 80 chr5 137523626 137523663 -15013596 + B1_Mus1 SINE Alu 105 148 0 5 1634 365 300 184 93 chr5 137523873 137524027 -15013232 - MER44B DNA MER2_type -4 546 378 6 1634 762 178 76 91 chr5 137524027 137524225 -15013034 + B3A SINE B2 1 195 -3 6 1634 365 300 184 93 chr5 137524225 137524456 -15012803 - MER44B DNA MER2_type -173 377 126 6 1634 751 254 45 35 chr5 137524462 137524662 -15012597 + ID_B1 SINE B4 2 203 -21 6 1634 574 312 49 46 chr5 137524671 137525017 -15012242 - RMER17C LTR ERVK -63 347 1 6 1634 578 209 43 0 chr5 137525050 137525165 -15012094 + RSINE1 SINE B4 4 123 -42 6 1634 426 151 0 0 chr5 137525312 137525385 -15011874 + GA-rich Low_complexity Low_complexity 2 74 0 6 1634 794 249 28 11 chr5 137525388 137525567 -15011692 + B3 SINE B2 2 183 -33 6 1634 369 58 0 0 chr5 137525567 137525619 -15011640 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1634 389 253 30 50 chr5 137525624 137525724 -15011535 + RSINE1 SINE B4 3 100 -65 6 1634 672 298 29 57 chr5 137526232 137526413 -15010846 + ID_B1 SINE B4 19 198 -26 7 1634 1472 79 16 0 chr5 137526413 137526603 -15010656 - B2_Mm2 SINE B2 -1 194 2 7 1634 672 298 29 57 chr5 137526603 137526631 -15010628 + ID_B1 SINE B4 199 222 -2 7 1634 546 264 45 85 chr5 137526665 137526864 -15010395 + B3A SINE B2 8 198 0 7 1634 742 198 10 25 chr5 137527425 137527585 -15009674 - ID_B1 SINE B4 -2 222 70 7 1634 1220 50 0 0 chr5 137527636 137527777 -15009482 + B1_Mus1 SINE Alu 3 143 -5 7 1634 25 0 0 0 chr5 137527777 137527802 -15009457 + AT_rich Low_complexity Low_complexity 1 25 0 7 1634 295 301 67 10 chr5 137527805 137527909 -15009350 - ID_B1 SINE B4 -29 195 86 7 1634 256 286 43 0 chr5 137528423 137528493 -15008766 - B4A SINE B4 -4 288 216 7 1634 279 0 0 0 chr5 137528506 137528537 -15008722 + (TG)n Simple_repeat Simple_repeat 1 31 0 7 1634 319 250 114 0 chr5 137528560 137528648 -15008611 - RSINE1 SINE B4 -38 127 30 7 1634 249 253 242 0 chr5 137528673 137528764 -15008495 - PB1D9 SINE Alu -7 113 1 8 1634 340 336 93 8 chr5 137528764 137528838 -15008421 - B4A SINE B4 -207 85 1 7 1634 330 230 115 0 chr5 137528889 137528976 -15008283 + MLT1A1 LTR MaLR 1 97 -311 8 1634 606 233 196 17 chr5 137528981 137529129 -15008130 + B3 SINE B2 2 167 -49 8 1634 189 0 0 0 chr5 137529129 137529150 -15008109 + (CAGA)n Simple_repeat Simple_repeat 4 24 0 8 1634 606 233 196 17 chr5 137529150 137529180 -15008079 + B3 SINE B2 168 211 -5 8 1634 273 391 81 8 chr5 137529212 137529282 -15007977 + ORR1D2 LTR MaLR 18 91 -279 8 1634 1548 239 80 3 chr5 137529282 137529634 -15007625 + MTE2b LTR MaLR 1 379 0 8 1634 273 391 81 8 chr5 137529634 137529823 -15007436 + ORR1D2 LTR MaLR 92 295 -75 8 1634 1368 261 38 35 chr5 137529832 137530205 -15007054 + MTEa LTR MaLR 4 377 -2 8 1634 249 307 78 17 chr5 137530345 137530461 -15006798 + MLT1A1 LTR MaLR 248 370 -38 8 1634 350 284 25 41 chr5 137530462 137530583 -15006676 + PB1D7 SINE Alu 1 119 -1 8 1634 450 0 0 0 chr5 137530604 137530654 -15006605 + (TC)n Simple_repeat Simple_repeat 2 51 0 8 1634 315 0 0 0 chr5 137530654 137530688 -15006571 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1634 622 198 40 0 chr5 137530696 137530822 -15006437 - RSINE1 SINE B4 -24 141 11 9 1634 900 244 72 0 chr5 137530891 137531100 -15006159 - ID_B1 SINE B4 0 224 1 9 1634 369 0 0 0 chr5 137531258 137531299 -15005960 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1634 1466 44 21 21 chr5 137531424 137531610 -15005649 + B2_Mm2 SINE B2 1 186 -9 9 1634 747 231 21 0 chr5 137531669 137531812 -15005447 - RSINE1 SINE B4 -17 148 3 9 1634 417 330 9 0 chr5 137531950 137532065 -15005194 + PB1 SINE Alu 5 120 -7 9 1634 288 0 0 0 chr5 137532164 137532196 -15005063 + (T)n Simple_repeat Simple_repeat 1 32 0 9 1634 1190 62 14 0 chr5 137532196 137532341 -15004918 - B1_Mm SINE Alu 0 147 1 9 1634 256 288 102 18 chr5 137532359 137532386 -15004873 - B2_Mm2 SINE B2 -5 190 11 9 1634 395 235 115 50 chr5 137532386 137532525 -15004734 - RSINE1 SINE B4 -6 159 12 9 1634 736 246 36 63 chr5 137532618 137532839 -15004420 + B3 SINE B2 1 215 -1 1 1634 437 198 5 37 chr5 137532861 137532986 -15004273 + PB1D10 SINE Alu 1 120 0 1 1634 416 247 0 0 chr5 137533011 137533092 -15004167 + PB1D9 SINE Alu 22 102 -18 1 1634 195 42 0 0 chr5 137533095 137533119 -15004140 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1634 1433 57 6 6 chr5 137533124 137533301 -15003958 - B2_Mm2 SINE B2 -18 177 1 1 1634 252 0 0 0 chr5 137533314 137533342 -15003917 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1634 297 275 77 0 chr5 137533361 137533452 -15003807 + ID_B1 SINE B4 77 174 -50 1 1634 388 208 104 0 chr5 137533376 137533472 -15003787 + PB1D10 SINE Alu 12 117 0 1 1634 21 0 0 0 chr5 137533601 137533622 -15003637 + AT_rich Low_complexity Low_complexity 1 21 0 1 1634 369 0 0 0 chr5 137533979 137534020 -15003239 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1634 516 32 0 0 chr5 137534286 137534348 -15002911 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1634 216 0 0 0 chr5 137534348 137534371 -15002888 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1634 511 237 66 90 chr5 137534371 137534538 -15002721 - RSINE1 SINE B4 0 165 3 1 1634 386 206 0 52 chr5 137534671 137534748 -15002511 - ID4_ SINE ID -10 73 1 1 1634 1488 68 18 9 chr5 137534748 137535129 -15002130 - ZP3AR Satellite Satellite -11 384 1 1 1634 261 83 0 0 chr5 137535615 137535651 -15001608 + (TCC)n Simple_repeat Simple_repeat 3 38 0 1 1634 451 254 82 7 chr5 137535676 137535697 -15001562 - ID_B1 SINE B4 0 224 195 1 1634 1181 61 0 7 chr5 137535697 137535846 -15001413 - B1_Mus1 SINE Alu 0 148 1 1 1634 451 254 82 7 chr5 137535846 137535959 -15001300 - ID_B1 SINE B4 -30 194 81 1 1634 523 248 45 30 chr5 137536092 137536225 -15001034 - B1_Mur1 SINE Alu -5 144 10 1 1634 614 310 112 0 chr5 137536272 137536469 -15000790 - ID_B1 SINE B4 -4 220 2 1 1634 382 241 17 51 chr5 137536641 137536759 -15000500 - PB1D10 SINE Alu 0 117 4 1 1634 243 276 82 76 chr5 137536772 137536802 -15000457 - B2_Mm2 SINE B2 -10 185 155 1 1634 1006 126 7 0 chr5 137536802 137536945 -15000314 - B1_Mus2 SINE Alu -3 144 1 1 1634 276 30 0 0 chr5 137536954 137536987 -15000272 + (TG)n Simple_repeat Simple_repeat 2 34 0 1 1634 483 279 28 35 chr5 137536989 137537130 -15000129 - RSINE1 SINE B4 -24 141 2 1 1634 640 248 12 24 chr5 137537157 137537322 -14999937 - RSINE1 SINE B4 0 165 3 1 1634 211 267 0 0 chr5 137537553 137537598 -14999661 + GA-rich Low_complexity Low_complexity 2 46 0 1 1634 252 86 0 0 chr5 137538085 137538120 -14999139 + (G)n Simple_repeat Simple_repeat 1 35 0 1 1634 231 203 76 30 chr5 137539569 137539635 -14997624 - ID4 SINE ID -14 69 1 1 1634 1064 117 33 22 chr5 137539635 137539819 -14997440 - ZP3AR Satellite Satellite -11 201 16 1 1634 1181 225 5 5 chr5 137540962 137541185 -14996074 - ID_B1 SINE B4 0 224 2 1 1634 241 257 63 90 chr5 137541920 137542031 -14995228 - PB1D10 SINE Alu 0 117 10 1 1634 397 336 82 0 chr5 137541962 137542108 -14995151 - ID_B1 SINE B4 -61 163 6 1 1634 510 216 10 19 chr5 137542134 137542238 -14995021 - PB1D10 SINE Alu -8 109 7 1 1634 576 308 13 0 chr5 137542155 137542311 -14994948 - ID_B1 SINE B4 -53 171 14 1 1634 360 271 31 20 chr5 137542304 137542402 -14994857 - PB1D10 SINE Alu -11 106 8 1 1634 217 328 0 0 chr5 137542353 137542411 -14994848 - B4A SINE B4 -151 141 84 1 1634 27 0 0 0 chr5 137542456 137542483 -14994776 + AT_rich Low_complexity Low_complexity 1 27 0 1 1634 293 234 0 21 chr5 137543959 137544055 -14993204 + CT-rich Low_complexity Low_complexity 4 97 0 1 1634 668 197 8 0 chr5 137544055 137544177 -14993082 - B1F SINE Alu -26 123 1 1 1634 276 287 29 102 chr5 137544177 137544238 -14993021 - MT2B2 LTR ERVL -446 155 97 1 1634 365 325 0 32 chr5 137544405 137544529 -14992730 - RSINE1 SINE B4 -40 125 6 1 1634 341 200 0 0 chr5 137544652 137544707 -14992552 - PB1D10 SINE Alu -12 105 51 1 1634 1155 115 42 0 chr5 137544742 137544933 -14992326 + ZP3AR Satellite Satellite 3 201 -11 1 1634 396 218 0 13 chr5 137544933 137545012 -14992247 + ID4_ SINE ID 1 78 -5 1 1634 344 190 13 0 chr5 137545572 137545651 -14991608 + CT-rich Low_complexity Low_complexity 1 80 0 1 1634 312 250 0 12 chr5 137545663 137545680 -14991579 + C-rich Low_complexity Low_complexity 65 81 0 1 1634 871 166 29 0 chr5 137545680 137545819 -14991440 - B1_Mur1 SINE Alu -6 143 1 1 1634 312 250 0 12 chr5 137545819 137545882 -14991377 + C-rich Low_complexity Low_complexity 3 64 0 1 1634 308 269 0 25 chr5 137545898 137545978 -14991281 - B1F SINE Alu -70 79 2 1 1634 621 239 49 14 chr5 137546173 137546317 -14990942 - B1F SINE Alu 0 149 1 1 1634 196 360 9 57 chr5 137546351 137546457 -14990802 - MIRb SINE MIR -58 210 110 1 1634 261 369 56 14 chr5 137546470 137546613 -14990646 - B1F SINE Alu 0 149 1 1 1634 686 303 6 0 chr5 137546613 137546662 -14990597 - ID SINE ID -143 81 32 1 1634 435 167 0 13 chr5 137547411 137547490 -14989769 - PB1D10 SINE Alu -22 95 18 1 1634 201 74 0 0 chr5 137548260 137548287 -14988972 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 1 1634 748 199 7 14 chr5 137549007 137549155 -14988104 - B1_Mur1 SINE Alu -2 147 1 1 1634 649 276 16 16 chr5 137549167 137549355 -14987904 - B3A SINE B2 -10 188 1 1 1634 738 62 0 0 chr5 137549441 137549537 -14987722 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 1 1634 828 249 32 32 chr5 137549587 137549803 -14987456 - ID_B1 SINE B4 0 224 9 1 1634 516 300 0 0 chr5 137550825 137550945 -14986314 - B1F1 SINE Alu -13 136 17 1 1634 376 202 101 46 chr5 137550954 137551063 -14986196 - PB1D10 SINE Alu 0 117 3 1 1634 631 313 0 24 chr5 137551134 137551301 -14985958 + RSINE1 SINE B4 3 165 0 1 1634 567 245 79 0 chr5 137551975 137552114 -14985145 - RSINE1 SINE B4 -5 160 11 1 1634 422 102 0 14 chr5 137552893 137552963 -14984296 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1634 243 231 58 0 chr5 137552963 137553015 -14984244 - RSINE1 SINE B4 -25 140 86 1 1634 318 159 0 0 chr5 137553028 137553097 -14984162 + (CA)n Simple_repeat Simple_repeat 2 70 0 1 1634 523 266 28 14 chr5 137553438 137553583 -14983676 - B1F SINE Alu -1 148 2 1 1634 570 174 10 0 chr5 137553627 137553725 -14983534 + B1_Mus2 SINE Alu 49 147 0 1 1634 309 51 0 0 chr5 137553746 137553785 -14983474 + (ACTG)n Simple_repeat Simple_repeat 1 39 0 1 1634 541 318 76 18 chr5 137554093 137554317 -14982942 - B4A SINE B4 -53 239 3 1 1634 418 229 8 125 chr5 137554416 137554536 -14982723 - RSINE1 SINE B4 -57 108 3 1 1634 280 283 29 0 chr5 137554967 137555049 -14982210 - PB1D10 SINE Alu -44 103 19 1 1634 316 199 44 8 chr5 137555126 137555225 -14982034 - B1_Mur4 SINE Alu -22 125 23 1 1634 609 14 0 0 chr5 137555225 137555295 -14981964 + (TC)n Simple_repeat Simple_repeat 2 71 0 1 1634 545 215 99 8 chr5 137555298 137555429 -14981830 - ID_B1 SINE B4 -74 150 8 1 1634 218 211 35 0 chr5 137555430 137555487 -14981772 + CT-rich Low_complexity Low_complexity 2 60 0 1 1634 462 143 0 0 chr5 137555487 137555564 -14981695 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1634 315 365 9 0 chr5 137555564 137555679 -14981580 - PB1D10 SINE Alu -1 116 1 1 1634 316 354 0 0 chr5 137555584 137555680 -14981579 - ID_B1 SINE B4 -48 176 81 1 1634 216 0 0 0 chr5 137556212 137556236 -14981023 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1634 255 329 24 12 chr5 137556236 137556300 -14980959 + ID SINE ID 17 81 -143 1 1634 491 236 65 14 chr5 137556300 137556446 -14980813 + B1F SINE Alu 1 146 -3 1 1634 571 138 18 9 chr5 137556446 137556556 -14980703 + G-rich Low_complexity Low_complexity 2 112 0 1 1634 266 189 18 98 chr5 137557039 137557096 -14980163 + B1_Mur4 SINE Alu 64 118 -32 1 1634 801 99 0 0 chr5 137557096 137557217 -14980042 + (GGAGA)n Simple_repeat Simple_repeat 1 121 0 1 1634 261 189 13 127 chr5 137557217 137557251 -14980008 + B1_Mm SINE Alu 118 145 -2 1 1634 355 221 26 0 chr5 137557321 137557398 -14979861 - B4A SINE B4 -60 232 154 1 1634 310 295 13 0 chr5 137557423 137557501 -14979758 - B4A SINE B4 -212 80 2 1 1634 1779 125 125 0 chr5 137557722 137558007 -14979252 + ORR1C2 LTR MaLR 6 319 -65 1 1634 240 35 0 0 chr5 137558007 137558036 -14979223 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1634 1779 125 125 0 chr5 137558036 137558077 -14979182 + ORR1C2 LTR MaLR 320 371 -13 1 1634 623 270 0 13 chr5 137558331 137558481 -14978778 + B1_Mur2 SINE Alu 2 149 0 1 1634 349 247 126 89 chr5 137558509 137558544 -14978715 - B3A SINE B2 0 198 172 1 1634 243 0 0 0 chr5 137558544 137558571 -14978688 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1634 349 247 126 89 chr5 137558571 137558726 -14978533 - B3A SINE B2 -27 171 1 1 1634 829 264 18 14 chr5 137558740 137558963 -14978296 - ID_B1 SINE B4 0 224 1 1 1634 730 199 0 14 chr5 137559412 137559550 -14977709 + RSINE1 SINE B4 2 137 -28 1 1634 686 206 51 6 chr5 137559687 137559843 -14977416 + ID_B1 SINE B4 2 164 -60 1 1634 632 281 61 34 chr5 137559822 137559856 -14977403 - B4 SINE B4 -22 270 231 1 1634 556 212 71 112 chr5 137559856 137559882 -14977377 - RSINE1 SINE B4 0 165 148 1 1634 837 87 34 17 chr5 137559882 137560057 -14977202 + (TG)n Simple_repeat Simple_repeat 1 178 0 1 1634 556 212 71 112 chr5 137560057 137560200 -14977059 - RSINE1 SINE B4 -18 147 3 1 1634 632 281 61 34 chr5 137560200 137560216 -14977043 - B4 SINE B4 -62 230 218 1 1634 195 42 0 0 chr5 137560216 137560240 -14977019 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1634 632 281 61 34 chr5 137560240 137560450 -14976809 - B4 SINE B4 -75 217 3 1 1634 381 173 268 0 chr5 137560643 137560752 -14976507 + B1_Mus1 SINE Alu 2 137 -12 1 1634 291 54 0 0 chr5 137560754 137560791 -14976468 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1 1634 189 107 0 0 chr5 137560805 137560833 -14976426 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 2 1634 287 247 18 126 chr5 137561318 137561429 -14975830 + MT2B2 LTR ERVL 153 251 -333 2 1634 415 238 0 29 chr5 137561344 137561448 -14975811 + PB1D10 SINE Alu 11 111 -6 2 1634 517 256 29 158 chr5 137561473 137561615 -14975644 + ID_B1 SINE B4 43 187 -37 2 1634 2150 86 6 89 chr5 137561615 137561973 -14975286 - ORR1A4 LTR MaLR 0 329 2 2 1634 517 256 29 158 chr5 137561973 137562039 -14975220 + ID_B1 SINE B4 188 224 0 2 1634 399 202 15 8 chr5 137562066 137562196 -14975063 + GA-rich Low_complexity Low_complexity 1 131 0 2 1634 708 228 7 7 chr5 137563776 137563922 -14973337 + RSINE1 SINE B4 1 146 -19 2 1634 218 305 0 68 chr5 137564223 137564311 -14972948 - B1F1 SINE Alu -62 87 6 2 1634 1421 74 16 0 chr5 137564429 137564922 -14972337 + ZP3AR Satellite Satellite 1 500 0 2 1634 237 150 48 48 chr5 137564878 137564941 -14972318 + tRNA-Cys-TGY tRNA tRNA 2 64 -11 2 1634 184 286 20 0 chr5 137565173 137565222 -14972037 - MIR SINE MIR -118 144 95 2 1634 982 108 13 7 chr5 137565345 137565494 -14971765 - B1_Mur4 SINE Alu 0 150 1 2 1634 248 258 0 31 chr5 137565496 137565560 -14971699 + RMER5 LTR ERV1 141 202 -332 2 1634 247 274 0 16 chr5 137565558 137565621 -14971638 - B4A SINE B4 -227 65 4 2 1634 744 77 0 0 chr5 137565626 137565730 -14971529 + (TCC)n Simple_repeat Simple_repeat 1 104 0 2 1634 846 239 17 64 chr5 137565730 137565963 -14971296 - B4A SINE B4 -66 226 5 2 1634 1006 133 0 0 chr5 137566556 137566706 -14970553 + B1_Mur4 SINE Alu 1 150 0 2 1634 294 73 0 0 chr5 137566727 137566768 -14970491 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1634 563 325 24 31 chr5 137566770 137567062 -14970197 - B4A SINE B4 0 292 3 2 1634 476 247 75 46 chr5 137567063 137567237 -14970022 - B4A SINE B4 -72 220 42 2 1634 220 238 0 45 chr5 137567194 137567260 -14969999 - ID4_ SINE ID -1 82 20 2 1634 386 256 11 0 chr5 137567967 137568057 -14969202 - PB1D10 SINE Alu -8 109 19 2 1634 630 314 53 10 chr5 137568064 137568270 -14968989 - B3 SINE B2 -1 215 1 2 1634 459 306 104 0 chr5 137568282 137568475 -14968784 - ID_B1 SINE B4 -8 216 4 2 1634 528 111 0 0 chr5 137568538 137568619 -14968640 + (TG)n Simple_repeat Simple_repeat 1 81 0 2 1634 345 282 52 33 chr5 137568678 137568851 -14968408 - L1MA4A LINE L1 -319 5993 5825 2 1634 852 147 213 33 chr5 137568881 137569064 -14968195 - B3 SINE B2 0 216 1 2 1634 584 209 9 0 chr5 137569069 137569184 -14968075 - PB1D10 SINE Alu -1 116 1 2 1634 708 217 72 0 chr5 137569223 137569375 -14967884 - RSINE1 SINE B4 0 165 3 2 1634 272 27 27 0 chr5 137569946 137569983 -14967276 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1634 484 178 15 20 chr5 137570024 137570134 -14967125 - PB1D10 SINE Alu 0 117 14 2 1634 630 249 18 42 chr5 137570260 137570428 -14966831 - RSINE1 SINE B4 0 165 2 2 1634 868 96 22 7 chr5 137570525 137570661 -14966598 + B1_Mus1 SINE Alu 11 148 0 2 1634 248 268 65 65 chr5 137570661 137570683 -14966576 - YREP_Mm Unknown Unknown -1494 272 151 2 1634 248 171 36 12 chr5 137570683 137570766 -14966493 + GA-rich Low_complexity Low_complexity 2 86 0 2 1634 991 38 8 8 chr5 137570783 137570916 -14966343 + (GAA)n Simple_repeat Simple_repeat 3 135 0 2 1634 1340 226 25 25 chr5 137571058 137571413 -14965846 - ORR1E LTR MaLR -2 377 5 2 1634 528 259 23 28 chr5 137571466 137571703 -14965556 + MTE2b LTR MaLR 10 351 -28 2 1634 223 178 0 22 chr5 137571729 137571775 -14965484 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1634 581 207 146 15 chr5 137571782 137571919 -14965340 - RSINE1 SINE B4 -8 157 3 2 1634 2066 133 9 3 chr5 137572262 137572608 -14964651 - RLTR15 LTR ERVK -9 350 3 2 1634 607 246 112 9 chr5 137572610 137572830 -14964429 - MTD LTR MaLR -148 231 19 2 1634 696 196 7 7 chr5 137572999 137573138 -14964121 - B1_Mur1 SINE Alu -9 140 2 2 1634 23 54 0 0 chr5 137573303 137573340 -14963919 + AT_rich Low_complexity Low_complexity 1 37 0 2 1634 447 259 83 7 chr5 137573357 137573501 -14963758 - RSINE1 SINE B4 -8 157 3 2 1634 925 182 84 25 chr5 137573509 137573565 -14963694 - B3 SINE B2 0 216 164 2 1634 369 0 0 0 chr5 137573565 137573606 -14963653 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1634 925 182 84 25 chr5 137573606 137573752 -14963507 - B3 SINE B2 -53 163 2 2 1634 623 266 83 31 chr5 137573752 137573971 -14963288 - B4A SINE B4 -59 233 3 2 1634 540 45 0 0 chr5 137573986 137574053 -14963206 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 2 1634 332 274 12 0 chr5 137574053 137574137 -14963122 - PB1D9 SINE Alu -5 115 31 2 1634 267 257 54 174 chr5 137574478 137574602 -14962657 + MLT1A1 LTR MaLR 235 347 -61 2 1634 451 312 7 7 chr5 137574602 137574744 -14962515 - B1F SINE Alu -6 143 2 2 1634 267 257 54 174 chr5 137574744 137574803 -14962456 + MLT1A1 LTR MaLR 348 396 -12 2 1634 558 258 0 92 chr5 137574840 137575024 -14962235 - RMER15 LTR ERVL -45 530 364 2 1634 1020 274 14 18 chr5 137575377 137575659 -14961600 + B4 SINE B4 8 288 -4 2 1634 456 262 124 28 chr5 137575738 137575883 -14961376 + B3 SINE B2 2 160 -56 2 1634 204 40 0 0 chr5 137575908 137575933 -14961326 + (TAA)n Simple_repeat Simple_repeat 2 26 0 2 1634 305 233 17 0 chr5 137576149 137576209 -14961050 + HAL1-3A_ME LINE L1 1958 2018 -840 2 1634 837 146 35 0 chr5 137576212 137576383 -14960876 + (CATA)n Simple_repeat Simple_repeat 2 178 0 2 1634 434 172 12 30 chr5 137576407 137576575 -14960684 + (CAGAGA)n Simple_repeat Simple_repeat 4 168 0 2 1634 214 179 0 0 chr5 137576576 137576615 -14960644 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2 1634 582 54 0 0 chr5 137576919 137576993 -14960266 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 2 1634 201 244 0 0 chr5 137577051 137577092 -14960167 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1634 471 221 126 89 chr5 137577125 137577339 -14959920 - B4A SINE B4 -67 225 4 2 1634 250 238 0 116 chr5 137577359 137577454 -14959805 + B4A SINE B4 63 146 -146 2 1634 440 279 0 18 chr5 137577399 137577512 -14959747 + PB1D10 SINE Alu 7 117 0 2 1634 354 279 30 0 chr5 137577514 137577612 -14959647 + B1F SINE Alu 1 114 -6 2 1634 317 267 0 0 chr5 137577619 137577679 -14959580 + L1MEg LINE L1 1881 1940 -4144 2 1634 252 250 45 91 chr5 137577747 137577788 -14959471 + B1_Mur4 SINE Alu 45 149 -1 2 1634 329 149 29 29 chr5 137577788 137577857 -14959402 + ID_B1 SINE B4 155 223 -1 2 1634 409 243 9 18 chr5 137578349 137578462 -14958797 - PB1D10 SINE Alu -5 112 1 2 1634 362 272 23 31 chr5 137579340 137579469 -14957790 - B4 SINE B4 -19 273 146 2 1634 207 0 0 0 chr5 137579506 137579529 -14957730 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1634 431 225 142 40 chr5 137579543 137579691 -14957568 - RSINE1 SINE B4 0 165 3 2 1634 247 174 22 0 chr5 137579937 137579983 -14957276 + ORR1E LTR MaLR 1 47 -312 2 1634 651 292 37 16 chr5 137579985 137580173 -14957086 - B3A SINE B2 -1 197 6 2 1634 337 301 145 23 chr5 137580233 137580447 -14956812 + ORR1E LTR MaLR 88 327 -32 2 1634 335 106 15 0 chr5 137580527 137580593 -14956666 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1634 882 284 12 17 chr5 137580702 137580982 -14956277 - B4A SINE B4 -19 273 1 2 1634 784 224 61 30 chr5 137581008 137581206 -14956053 + MTD LTR MaLR 1 204 -215 2 1634 576 192 0 9 chr5 137581212 137581317 -14955942 + B3 SINE B2 1 104 -112 2 1634 460 231 207 24 chr5 137581331 137581495 -14955764 + MTD LTR MaLR 223 416 -3 2 1634 261 0 0 0 chr5 137582321 137582350 -14954909 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2 1634 266 250 16 0 chr5 137582657 137582721 -14954538 - ZP3AR Satellite Satellite -133 79 15 2 1634 319 284 8 33 chr5 137582745 137582865 -14954394 - PB1D10 SINE Alu 0 117 1 2 1634 359 21 21 0 chr5 137582894 137582942 -14954317 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1634 245 282 81 23 chr5 137583398 137583485 -14953774 - PB1D7 SINE Alu -27 93 2 2 1634 555 245 172 15 chr5 137583794 137583997 -14953262 - B4A SINE B4 -56 236 2 2 1634 27 0 0 0 chr5 137584339 137584366 -14952893 + AT_rich Low_complexity Low_complexity 1 27 0 2 1634 300 53 0 0 chr5 137584699 137584737 -14952522 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2 1634 818 260 42 17 chr5 137584758 137584991 -14952268 - ID_B1 SINE B4 -49 243 6 2 1634 376 206 30 40 chr5 137584996 137585097 -14952162 - PB1D10 SINE Alu -17 100 1 2 1634 476 182 30 10 chr5 137587139 137587239 -14950020 - PB1D10 SINE Alu 0 117 16 2 1634 192 40 0 0 chr5 137587542 137587567 -14949692 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2 1634 1386 147 72 5 chr5 137587615 137587955 -14949304 - ZP3AR Satellite Satellite -24 362 1 2 1634 558 103 0 0 chr5 137588223 137588310 -14948949 + (TCCC)n Simple_repeat Simple_repeat 1 87 0 2 1634 614 179 171 7 chr5 137590897 137591043 -14946216 - ID_B1 SINE B4 -20 204 35 2 1634 285 302 55 28 chr5 137591026 137591135 -14946124 - PB1D10 SINE Alu -5 112 1 2 1634 417 195 0 22 chr5 137591523 137591612 -14945647 + B1F SINE Alu 41 127 -22 2 1634 274 250 12 50 chr5 137591842 137591922 -14945337 + C-rich Low_complexity Low_complexity 4 80 0 2 1634 370 257 19 87 chr5 137592609 137592766 -14944493 + ID_B1 SINE B4 90 258 -34 2 1634 460 228 59 0 chr5 137592989 137593090 -14944169 - PB1D10 SINE Alu -10 107 1 2 1634 225 0 0 0 chr5 137593097 137593122 -14944137 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1634 578 246 75 41 chr5 137593234 137593479 -14943780 + ID_B1 SINE B4 13 269 -23 3 1634 425 276 39 19 chr5 137593590 137593745 -14943514 + RSINE1 SINE B4 8 165 0 3 1634 1158 54 0 0 chr5 137593822 137593969 -14943290 + B1_Mus2 SINE Alu 1 147 0 3 1634 246 132 0 0 chr5 137593990 137594043 -14943216 + (A)n Simple_repeat Simple_repeat 1 53 0 3 1634 330 304 0 43 chr5 137594335 137594366 -14942893 + C-rich Low_complexity Low_complexity 109 139 0 3 1634 854 163 20 7 chr5 137594366 137594514 -14942745 - B1_Mur4 SINE Alu 0 150 1 3 1634 330 304 0 43 chr5 137594514 137594623 -14942636 + C-rich Low_complexity Low_complexity 5 108 0 3 1634 312 296 95 8 chr5 137594623 137594749 -14942510 - B1F SINE Alu -3 146 10 3 1634 652 194 0 58 chr5 137594827 137594964 -14942295 - RSINE1 SINE B4 -35 130 2 3 1634 588 242 0 8 chr5 137595106 137595239 -14942020 - ID_B1 SINE B4 0 224 93 3 1634 363 273 27 34 chr5 137595239 137595254 -14942005 - B1_Mus1 SINE Alu -1 147 1 3 1634 240 382 36 18 chr5 137595272 137595384 -14941875 - MER63A DNA AcHobo -86 124 11 3 1634 531 260 58 13 chr5 137595461 137595617 -14941642 - RSINE1 SINE B4 -2 163 1 3 1634 379 182 44 22 chr5 137595620 137595710 -14941549 - L1M5 LINE L1 -3195 2951 2860 3 1634 227 31 31 0 chr5 137595715 137595747 -14941512 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1634 399 83 0 0 chr5 137595748 137595808 -14941451 + (GA)n Simple_repeat Simple_repeat 2 61 0 3 1634 511 95 0 0 chr5 137595818 137595892 -14941367 + B1_Mur3 SINE Alu 59 132 -17 3 1634 489 138 0 0 chr5 137595899 137595979 -14941280 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 1634 531 257 20 41 chr5 137596091 137596237 -14941022 - ID_B1 SINE B4 0 224 82 3 1634 524 223 107 0 chr5 137596302 137596423 -14940836 + B1_Mur2 SINE Alu 5 138 -11 3 1634 270 0 0 0 chr5 137596423 137596453 -14940806 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1634 857 125 111 23 chr5 137596469 137596641 -14940618 + B2_Mm2 SINE B2 1 187 -8 3 1634 563 131 203 47 chr5 137596895 137597023 -14940236 + B1_Mur4 SINE Alu 1 148 -2 3 1634 525 282 87 0 chr5 137597091 137597240 -14940019 + ID_B1 SINE B4 42 203 -21 3 1634 423 108 0 26 chr5 137597461 137597537 -14939722 - PB1D9 SINE Alu 0 120 47 3 1634 636 236 182 5 chr5 137597637 137597829 -14939430 - B4 SINE B4 -30 262 37 3 1634 621 193 66 15 chr5 137598083 137598220 -14939039 + RSINE1 SINE B4 4 147 -18 3 1634 25 0 0 0 chr5 137598239 137598264 -14938995 + AT_rich Low_complexity Low_complexity 1 25 0 3 1634 238 253 214 22 chr5 137598449 137598538 -14938721 + PB1D10 SINE Alu 12 117 0 3 1634 660 268 9 37 chr5 137598956 137599173 -14938086 + ID_B1 SINE B4 1 211 -13 3 1634 516 233 58 0 chr5 137599176 137599296 -14937963 + B1F1 SINE Alu 22 148 -1 3 1634 396 0 0 0 chr5 137599344 137599388 -14937871 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1634 357 234 273 6 chr5 137599536 137599711 -14937548 + ID_B1 SINE B4 2 223 -1 3 1634 303 239 17 21 chr5 137599795 137599896 -14937363 + MTEa LTR MaLR 24 123 -256 3 1634 506 198 26 18 chr5 137600430 137600543 -14936716 + MTEa LTR MaLR 50 163 -216 3 1634 474 33 0 0 chr5 137600709 137600769 -14936490 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1634 247 188 0 0 chr5 137600823 137600871 -14936388 - RSINE1 SINE B4 -115 50 3 3 1634 381 322 69 32 chr5 137600906 137601095 -14936164 + B4A SINE B4 1 196 -96 3 1634 247 333 106 26 chr5 137601355 137601506 -14935753 - ID_B1 SINE B4 -54 170 8 3 1634 249 300 0 53 chr5 137601628 137601723 -14935536 - MLT1C LTR MaLR 0 408 319 3 1634 284 282 131 48 chr5 137602039 137602307 -14934952 + B4 SINE B4 3 292 0 3 1634 479 308 85 45 chr5 137602508 137602800 -14934459 + B4 SINE B4 10 278 -14 3 1634 1133 68 0 0 chr5 137602847 137602995 -14934264 + B1_Mus1 SINE Alu 1 148 0 3 1634 1280 147 217 35 chr5 137603054 137603214 -14934045 - RMER17C LTR ERVK 0 410 180 3 1634 943 9 0 17 chr5 137603214 137603332 -14933927 + (GGAGA)n Simple_repeat Simple_repeat 2 117 0 3 1634 1280 147 217 35 chr5 137603332 137603516 -14933743 - RMER17C LTR ERVK -231 179 3 3 1634 372 22 0 0 chr5 137603548 137603593 -14933666 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1634 708 241 50 28 chr5 137603629 137603847 -14933412 - BGLII LTR ERVK 0 421 199 3 1634 1425 184 146 0 chr5 137603838 137604153 -14933106 - MTE2a LTR MaLR -16 363 3 3 1634 288 168 71 9 chr5 137604153 137604234 -14933025 - B4A SINE B4 -94 198 119 3 1634 290 267 0 53 chr5 137605417 137605512 -14931747 + B1F SINE Alu 21 110 -39 3 1634 544 166 25 76 chr5 137605762 137605919 -14931340 + B1F SINE Alu 1 149 0 3 1634 468 103 0 13 chr5 137605928 137606007 -14931252 + ZP3AR Satellite Satellite 47 124 -88 3 1634 298 290 43 11 chr5 137605977 137606071 -14931188 + BC1_Mm scRNA scRNA 1 97 -55 3 1634 369 290 56 37 chr5 137606100 137606261 -14930998 - MLT1C LTR MaLR -183 284 121 3 1634 243 345 20 46 chr5 137606793 137606945 -14930314 - YREP_Mm Unknown Unknown -1483 329 182 3 1634 764 174 0 14 chr5 137606812 137606952 -14930307 + ID_B1 SINE B4 87 224 0 3 1634 21 0 0 0 chr5 137607013 137607034 -14930225 + AT_rich Low_complexity Low_complexity 1 21 0 3 1634 398 226 0 9 chr5 137607082 137607189 -14930070 + (TG)n Simple_repeat Simple_repeat 2 107 0 3 1634 460 238 22 111 chr5 137607190 137607370 -14929889 - RSINE1 SINE B4 0 165 2 3 1634 654 180 49 0 chr5 137607639 137607761 -14929498 + B1_Mur1 SINE Alu 10 137 -12 3 1634 252 86 0 0 chr5 137607761 137607796 -14929463 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3 1634 806 145 283 0 chr5 137607796 137607955 -14929304 + B3 SINE B2 5 208 -8 3 1634 213 39 0 0 chr5 137607956 137607982 -14929277 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1634 424 315 112 58 chr5 137607999 137608275 -14928984 + B4 SINE B4 2 292 0 3 1634 562 255 51 7 chr5 137608337 137608475 -14928784 + RSINE1 SINE B4 5 148 -17 3 1634 181 263 7 28 chr5 137608800 137608941 -14928318 + (TG)n Simple_repeat Simple_repeat 1 138 0 3 1634 294 240 29 6 chr5 137608972 137609144 -14928115 + (TG)n Simple_repeat Simple_repeat 2 177 0 3 1634 671 200 14 54 chr5 137609333 137609366 -14927893 - B1_Mur1 SINE Alu -6 143 117 3 1634 2106 169 52 5 chr5 137609366 137609753 -14927506 + MTB_Mm LTR MaLR 3 407 0 3 1634 671 200 14 54 chr5 137609753 137609867 -14927392 - B1_Mur1 SINE Alu -33 116 2 3 1634 289 308 219 29 chr5 137609922 137610059 -14927200 - RSINE1 SINE B4 0 165 3 3 1634 577 71 191 0 chr5 137610438 137610564 -14926695 + RMER17B LTR ERVK 311 460 -498 3 1634 332 329 23 23 chr5 137610577 137610712 -14926547 + B3A SINE B2 27 164 -34 3 1634 408 71 0 0 chr5 137610712 137610768 -14926491 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1634 332 329 23 23 chr5 137610768 137610803 -14926456 + B3A SINE B2 165 197 -1 3 1634 748 164 7 13 chr5 137611466 137611620 -14925639 + CT-rich Low_complexity Low_complexity 4 156 0 3 1634 353 319 39 73 chr5 137611630 137611653 -14925606 - B4A SINE B4 -43 249 152 3 1634 881 191 0 0 chr5 137611653 137611794 -14925465 - B1_Mur1 SINE Alu -1 148 8 3 1634 353 319 39 73 chr5 137611794 137611809 -14925450 - B4A SINE B4 -43 151 77 3 1634 469 270 190 0 chr5 137611815 137611952 -14925307 - RSINE1 SINE B4 -2 163 1 3 1634 739 228 51 56 chr5 137612078 137612292 -14924967 - ID_B1 SINE B4 -8 216 4 3 1634 531 287 0 0 chr5 137612319 137612427 -14924832 + PB1D10 SINE Alu 6 113 -4 3 1634 680 248 67 29 chr5 137612450 137612658 -14924601 - B3 SINE B2 0 216 1 3 1634 232 299 29 4 chr5 137613170 137613257 -14924002 - B1_Mus2 SINE Alu -41 106 17 3 1634 566 256 211 5 chr5 137613263 137613448 -14923811 - ID_B1 SINE B4 0 224 2 3 1634 439 211 11 32 chr5 137614659 137614683 -14922576 - B4 SINE B4 -1 291 268 3 1634 465 66 0 0 chr5 137614683 137614744 -14922515 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1634 439 211 11 32 chr5 137614744 137614812 -14922447 - B4 SINE B4 -25 267 201 3 1634 672 269 41 116 chr5 137614819 137615113 -14922146 + ORR1E LTR MaLR 1 272 -87 3 1634 356 228 101 0 chr5 137615155 137615234 -14922025 - B4 SINE B4 -92 200 114 3 1634 586 286 29 0 chr5 137615269 137615409 -14921850 - B3 SINE B2 -3 213 70 3 1634 606 137 10 31 chr5 137615434 137615532 -14921727 - B4A SINE B4 -195 97 2 3 1634 482 242 3 31 chr5 137615532 137615641 -14921618 - PB1D10 SINE Alu -1 116 11 3 1634 1239 112 32 5 chr5 137615791 137615980 -14921279 + B2_Mm2 SINE B2 1 194 -1 3 1634 330 143 0 0 chr5 137615991 137616040 -14921219 - HAL1-3A_ME LINE L1 -835 2023 1975 3 1634 558 173 0 0 chr5 137616040 137616144 -14921115 + (TG)n Simple_repeat Simple_repeat 1 104 0 3 1634 373 223 75 28 chr5 137616148 137616254 -14921005 - RSINE1 SINE B4 0 165 55 3 1634 402 307 0 33 chr5 137616787 137616969 -14920290 + (CCCTG)n Simple_repeat Simple_repeat 3 178 0 3 1634 496 286 74 74 chr5 137617162 137617351 -14919908 + ORR1E LTR MaLR 5 193 -166 3 1634 444 37 0 0 chr5 137617359 137617413 -14919846 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 3 1634 679 183 30 38 chr5 137617415 137617546 -14919713 - B1_Mur2 SINE Alu -9 140 11 3 1634 379 255 51 3 chr5 137618402 137618497 -14918762 + B1F SINE Alu 49 149 -1 3 1634 447 63 0 0 chr5 137618574 137618637 -14918622 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 3 1634 668 272 123 42 chr5 137618660 137618921 -14918338 + B4A SINE B4 5 286 -6 3 1634 835 73 15 0 chr5 137618940 137619077 -14918182 + (CA)n Simple_repeat Simple_repeat 2 140 0 3 1634 298 222 161 77 chr5 137619086 137619251 -14918008 + MLT1B LTR MaLR 193 451 -16 3 1634 1143 78 107 6 chr5 137620158 137620326 -14916933 + B2_Mm2 SINE B2 2 186 -9 3 1634 257 250 0 0 chr5 137620352 137620400 -14916859 + ID4_ SINE ID 5 52 -31 3 1634 1020 133 0 0 chr5 137620435 137620615 -14916644 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1634 701 196 0 65 chr5 137620680 137620833 -14916426 - B1_Mur1 SINE Alu -4 145 3 4 1634 364 328 8 8 chr5 137620873 137620990 -14916269 - Tigger5 DNA MER2_type -2244 162 46 4 1634 324 0 0 0 chr5 137621003 137621039 -14916220 + (TC)n Simple_repeat Simple_repeat 1 36 0 4 1634 474 18 0 0 chr5 137621039 137621094 -14916165 + (TG)n Simple_repeat Simple_repeat 1 55 0 4 1634 703 263 94 35 chr5 137621125 137621245 -14916014 - B4 SINE B4 -78 214 82 4 1634 324 70 0 0 chr5 137621245 137621288 -14915971 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4 1634 703 263 94 35 chr5 137621288 137621368 -14915891 - B4 SINE B4 -211 81 2 4 1634 684 197 0 0 chr5 137621421 137621538 -14915721 - PB1D10 SINE Alu 0 117 1 4 1634 1171 185 5 5 chr5 137621661 137621867 -14915392 - B3 SINE B2 -6 210 5 4 1634 941 277 6 74 chr5 137621933 137622245 -14915014 - B4A SINE B4 0 292 2 4 1634 300 255 8 68 chr5 137622731 137622849 -14914410 - L1MDa LINE L1 -4084 2549 2439 4 1634 455 247 6 10 chr5 137622869 137622983 -14914276 - PB1D10 SINE Alu -6 111 3 4 1634 401 0 0 20 chr5 137623468 137623518 -14913741 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1634 915 300 11 30 chr5 137623519 137623784 -14913475 - B4A SINE B4 -25 267 8 4 1634 189 0 0 0 chr5 137623788 137623809 -14913450 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 4 1634 475 287 26 0 chr5 137623878 137623993 -14913266 - B1F SINE Alu -31 118 1 4 1634 270 194 0 0 chr5 137624511 137624583 -14912676 + (TG)n Simple_repeat Simple_repeat 1 72 0 4 1634 217 437 0 0 chr5 137625309 137625444 -14911815 + (TGG)n Simple_repeat Simple_repeat 3 137 0 4 204 240 446 0 0 chr5 137625556 137625724 -14911535 + (CAG)n Simple_repeat Simple_repeat 1 168 0 4 1635 202 430 0 0 chr5 137626263 137626398 -14910861 + (TGG)n Simple_repeat Simple_repeat 3 137 0 4 1635 209 444 0 0 chr5 137626911 137627082 -14910177 + (TGG)n Simple_repeat Simple_repeat 3 173 0 4 1635 305 309 0 24 chr5 137634077 137634160 -14903099 - B1_Mus1 SINE Alu -67 81 1 4 1635 298 193 52 54 chr5 137634232 137634342 -14902917 + MTD LTR MaLR 203 326 -93 4 1635 1467 184 55 75 chr5 137634341 137634743 -14902516 + ORR1D1 LTR MaLR 8 401 -20 4 1635 864 291 72 38 chr5 137635034 137635327 -14901932 + RCHARR1 DNA MER1_type 48 350 -624 4 1635 25 31 0 0 chr5 137635366 137635398 -14901861 + AT_rich Low_complexity Low_complexity 1 32 0 4 1635 635 154 8 0 chr5 137635479 137635596 -14901663 + (TA)n Simple_repeat Simple_repeat 1 118 0 4 1635 723 236 126 65 chr5 137635651 137635813 -14901446 + B4A SINE B4 48 231 -61 4 1635 317 221 115 80 chr5 137635813 137635926 -14901333 + PB1D9 SINE Alu 2 118 -2 4 1635 723 236 126 65 chr5 137635926 137635994 -14901265 + B4A SINE B4 232 292 0 4 1635 370 209 165 0 chr5 137636010 137636125 -14901134 + RCHARR1 DNA MER1_type 336 469 -505 4 1635 834 238 6 6 chr5 137636122 137636304 -14900955 + RCHARR1 DNA MER1_type 748 929 -45 4 1635 1055 234 157 23 chr5 137636303 137636609 -14900650 + ORR1D-int LTR MaLR 639 985 -385 4 1635 865 316 60 8 chr5 137636709 137636977 -14900282 - B4 SINE B4 -1 291 10 4 1635 486 335 110 40 chr5 137637042 137637187 -14900072 + L1MEc LINE L1 215 361 -6039 4 1635 2844 129 19 0 chr5 137637187 137637599 -14899660 + MTC LTR MaLR 1 420 -1 4 1635 486 335 110 40 chr5 137637599 137637807 -14899452 + L1MEc LINE L1 362 592 -5808 4 1635 444 264 30 54 chr5 137638195 137638363 -14898896 + RNLTR23 LTR ERVK 479 642 0 4 1635 257 220 0 0 chr5 137638363 137638412 -14898847 + PB1 SINE Alu 77 125 -2 4 1635 1675 21 5 8 chr5 137638439 137639016 -14898243 + ZP3AR Satellite Satellite 1 575 -1 4 1635 341 185 22 90 chr5 137639019 137639108 -14898151 + ID4_ SINE ID 1 83 0 4 1635 304 214 56 28 chr5 137639348 137639420 -14897839 + L1MEc LINE L1 3549 3622 -2697 4 1635 408 203 0 0 chr5 137639423 137639492 -14897767 + RSINE1 SINE B4 2 70 -95 4 1635 275 289 24 0 chr5 137639490 137639573 -14897686 + ID_B1 SINE B4 103 187 -37 4 1635 300 53 0 0 chr5 137640072 137640110 -14897149 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1635 600 199 91 8 chr5 137640158 137640290 -14896969 - B4 SINE B4 -69 223 81 4 1635 429 210 66 31 chr5 137640284 137640466 -14896793 - B3A SINE B2 -12 204 1 4 1635 301 290 21 11 chr5 137640466 137640557 -14896702 - B4 SINE B4 -198 94 3 4 1635 342 115 0 0 chr5 137640852 137640904 -14896355 + (CA)n Simple_repeat Simple_repeat 1 52 0 4 1635 298 288 41 41 chr5 137640971 137641094 -14896165 + L1_Rod LINE L1 5708 5830 -17 4 1635 212 191 24 0 chr5 137641094 137641136 -14896123 + CT-rich Low_complexity Low_complexity 2 44 0 4 1635 195 129 0 0 chr5 137641589 137641620 -14895639 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 4 1635 669 248 23 0 chr5 137641630 137641759 -14895500 - RSINE1 SINE B4 -19 146 15 4 1635 387 262 0 17 chr5 137641805 137641906 -14895353 + ID4 SINE ID 2 98 -54 4 1635 465 267 0 0 chr5 137642325 137642426 -14894833 + RSINE1 SINE B4 3 103 -62 4 1635 293 268 60 47 chr5 137642450 137642569 -14894690 + MLT1B LTR MaLR 243 382 -8 4 1635 234 91 0 0 chr5 137643075 137643108 -14894151 + (GGGAGA)n Simple_repeat Simple_repeat 5 37 0 4 1635 301 229 131 12 chr5 137711471 137711555 -14825704 + PB1D10 SINE Alu 3 96 -21 4 1635 382 311 6 79 chr5 137711966 137712107 -14825152 + B3A SINE B2 47 178 -20 4 1635 1086 44 0 0 chr5 137712107 137712243 -14825016 + (CA)n Simple_repeat Simple_repeat 1 136 0 4 1635 382 311 6 79 chr5 137712243 137712265 -14824994 + B3A SINE B2 179 198 0 4 1635 334 0 43 0 chr5 137712279 137712325 -14824934 + (TTA)n Simple_repeat Simple_repeat 3 50 0 4 1635 891 141 7 0 chr5 137712330 137712465 -14824794 - B1_Mus1 SINE Alu -12 136 1 4 1635 447 160 62 31 chr5 137712579 137712708 -14824551 + Lx2A1 LINE L1 6864 6996 -12 4 1635 299 333 113 39 chr5 137713258 137713461 -14823798 - B4A SINE B4 -65 227 10 4 1635 266 160 347 0 chr5 137713497 137713572 -14823687 - PB1D7 SINE Alu 0 120 20 4 1635 315 244 0 18 chr5 137713582 137713672 -14823587 + B1F SINE Alu 62 147 -2 4 1635 544 292 48 20 chr5 137713689 137713836 -14823423 + RSINE1 SINE B4 1 151 -14 4 1635 22 35 0 0 chr5 137713903 137713932 -14823327 + AT_rich Low_complexity Low_complexity 1 29 0 4 1635 487 326 0 22 chr5 137713950 137714088 -14823171 - B3A SINE B2 -63 135 1 4 1635 201 39 0 0 chr5 137714090 137714116 -14823143 + (A)n Simple_repeat Simple_repeat 1 26 0 4 1635 216 205 0 0 chr5 137714124 137714163 -14823096 + B4 SINE B4 4 42 -250 4 1635 296 259 56 11 chr5 137714174 137714264 -14822995 - MLT1I LTR MaLR 0 411 318 4 1635 968 241 34 86 chr5 137714365 137714692 -14822567 - MTE2a LTR MaLR 0 379 70 4 1635 757 186 8 0 chr5 137714703 137714821 -14822438 + ETnERV2-int LTR ERVK 7070 7188 -218 4 1635 241 222 151 14 chr5 137715221 137715294 -14821965 - MTE2a LTR MaLR -292 87 5 4 1635 928 221 51 9 chr5 137715561 137715776 -14821483 + B4 SINE B4 2 225 -67 4 1635 477 300 11 29 chr5 137715776 137715951 -14821308 + B4A SINE B4 105 276 -16 4 1635 274 273 0 83 chr5 137716016 137716100 -14821159 + B4 SINE B4 216 292 0 4 1635 242 283 17 0 chr5 137716104 137716164 -14821095 + (CA)n Simple_repeat Simple_repeat 1 61 0 4 1635 1057 223 32 144 chr5 137716453 137716856 -14820403 - MTE2a LTR MaLR -5 374 17 4 1635 682 220 11 0 chr5 137717054 137717231 -14820028 + GA-rich Low_complexity Low_complexity 2 180 0 4 1635 719 250 0 0 chr5 137717315 137717459 -14819800 - RSINE1 SINE B4 -19 146 3 4 1635 362 267 70 0 chr5 137717478 137717564 -14819695 - ID_B1 SINE B4 -19 205 114 4 1635 412 313 77 39 chr5 137717619 137717775 -14819484 - RSINE1 SINE B4 0 165 4 4 1635 681 194 35 7 chr5 137717786 137717931 -14819328 - B1_Mur2 SINE Alu 0 149 1 4 1635 808 185 7 0 chr5 137717972 137718118 -14819141 + B1_Mur1 SINE Alu 2 148 -1 4 1635 669 85 0 0 chr5 137718341 137718447 -14818812 + (GA)n Simple_repeat Simple_repeat 1 106 0 4 1635 197 138 43 54 chr5 137718456 137718548 -14818711 + (TA)n Simple_repeat Simple_repeat 2 92 0 4 1635 1505 202 71 11 chr5 137719170 137719520 -14817739 - MTD LTR MaLR -12 407 37 4 1635 357 131 0 0 chr5 137719535 137719596 -14817663 + (TG)n Simple_repeat Simple_repeat 1 61 0 4 1635 390 120 0 0 chr5 137719598 137719673 -14817586 + (CAGA)n Simple_repeat Simple_repeat 2 76 0 4 1635 319 145 29 0 chr5 137719737 137719806 -14817453 + (TA)n Simple_repeat Simple_repeat 1 71 0 4 1635 213 125 35 18 chr5 137719805 137719862 -14817397 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1635 223 191 29 0 chr5 137720161 137720229 -14817030 + GA-rich Low_complexity Low_complexity 2 71 0 4 1635 292 273 62 41 chr5 137720274 137720419 -14816840 - B1F SINE Alu -1 148 1 4 1635 451 266 15 30 chr5 137720289 137720421 -14816838 - ID_B1 SINE B4 -15 209 80 4 1635 872 239 97 59 chr5 137720418 137720738 -14816521 + MTD LTR MaLR 13 344 -75 4 1635 349 208 171 52 chr5 137720806 137720999 -14816260 + L1M4 LINE L1 3196 3411 -2735 4 1635 634 213 37 0 chr5 137721027 137721163 -14816096 - B1F2 SINE Alu -7 142 2 4 1635 495 0 0 0 chr5 137721172 137721227 -14816032 + (TC)n Simple_repeat Simple_repeat 2 56 0 4 1635 207 0 0 0 chr5 137721492 137721515 -14815744 + (TC)n Simple_repeat Simple_repeat 1 23 0 4 1635 665 78 0 64 chr5 137721524 137721634 -14815625 - B1_Mur4 SINE Alu -13 137 35 4 1635 441 0 0 0 chr5 137721665 137721714 -14815545 + (TG)n Simple_repeat Simple_repeat 1 49 0 4 1635 207 0 0 0 chr5 137722317 137722340 -14814919 + (CA)n Simple_repeat Simple_repeat 2 24 0 4 1635 199 0 65 0 chr5 137722435 137722466 -14814793 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4 1635 257 309 19 93 chr5 137722483 137722590 -14814669 + ID_B1 SINE B4 2 100 -124 4 1635 817 112 37 8 chr5 137722652 137722802 -14814457 + B2_Mm1t SINE B2 2 181 -14 4 1635 354 297 0 17 chr5 137722835 137722955 -14814304 + Lx6 LINE L1 7316 7433 -27 4 1635 367 297 16 41 chr5 137723258 137723341 -14813918 + B4A SINE B4 173 254 -38 5 1635 1374 59 32 5 chr5 137723341 137723499 -14813760 + B2_Mm1a SINE B2 2 160 -33 5 1635 315 0 0 0 chr5 137723499 137723534 -14813725 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 5 1635 1374 59 32 5 chr5 137723534 137723562 -14813697 + B2_Mm1a SINE B2 161 193 0 5 1635 367 297 16 41 chr5 137723562 137723601 -14813658 + B4A SINE B4 255 292 0 5 1635 1230 244 106 11 chr5 137723622 137723979 -14813280 - MTD LTR MaLR -25 394 4 5 1635 874 250 81 131 chr5 137724206 137724602 -14812657 + MTE2a LTR MaLR 4 379 0 5 1635 447 271 38 15 chr5 137725100 137725231 -14812028 + RSINE1 SINE B4 28 161 -4 5 1635 248 250 0 42 chr5 137725429 137725500 -14811759 - ID4_ SINE ID -15 68 1 5 1635 1531 57 2 8 chr5 137725500 137725845 -14811414 - ZP3AR Satellite Satellite -11 342 1 5 1635 1048 89 131 40 chr5 137725877 137726053 -14811206 + B2_Mm1t SINE B2 1 192 -1 5 1635 393 117 0 0 chr5 137726053 137726113 -14811146 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 5 1635 388 220 230 0 chr5 137726712 137726812 -14810447 + RSINE1 SINE B4 8 130 -35 5 1635 1416 77 11 0 chr5 137726872 137727054 -14810205 + B2_Mm1t SINE B2 2 185 -8 5 1635 411 357 55 31 chr5 137727068 137727360 -14809899 + MLT1J LTR MaLR 67 365 -147 5 1635 348 200 0 0 chr5 137727419 137727494 -14809765 + CT-rich Low_complexity Low_complexity 1 75 0 5 1635 345 164 0 16 chr5 137727532 137727594 -14809665 - RSINE1 SINE B4 -40 125 65 5 1635 24 0 0 0 chr5 137728190 137728214 -14809045 + GC_rich Low_complexity Low_complexity 1 24 0 5 1635 233 268 17 35 chr5 137729390 137729506 -14807753 + G-rich Low_complexity Low_complexity 4 117 0 5 1635 192 125 0 0 chr5 137729556 137729588 -14807671 + (CCCGG)n Simple_repeat Simple_repeat 4 35 0 5 1635 660 152 0 0 chr5 137730031 137730163 -14807096 + CT-rich Low_complexity Low_complexity 2 133 0 5 1635 189 0 0 0 chr5 137732560 137732581 -14804678 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 5 1635 213 256 37 37 chr5 137733372 137733453 -14803806 + PB1D9 SINE Alu 22 102 -18 5 1635 267 241 17 0 chr5 137733712 137733770 -14803489 + ID SINE ID 2 60 -164 5 1635 216 318 21 64 chr5 137733770 137733806 -14803453 + BC1_Mm scRNA scRNA 2 91 -61 5 1635 816 206 7 0 chr5 137733858 137734004 -14803255 - B1_Mur1 SINE Alu -2 147 1 5 1635 210 182 22 22 chr5 137734120 137734165 -14803094 + B1F SINE Alu 18 62 -87 5 1635 234 0 0 0 chr5 137734177 137734203 -14803056 + (TC)n Simple_repeat Simple_repeat 1 26 0 5 1635 372 22 0 0 chr5 137734203 137734247 -14803012 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1635 22 35 0 0 chr5 137734966 137734995 -14802264 + AT_rich Low_complexity Low_complexity 1 29 0 5 1635 264 184 94 15 chr5 137736789 137736875 -14800384 + PB1D10 SINE Alu 50 148 -1 5 1635 218 179 0 0 chr5 137740061 137740100 -14797159 + CT-rich Low_complexity Low_complexity 5 43 0 5 1635 2124 183 64 54 chr5 137740216 137740718 -14796541 + RLTR12B LTR ERVK 22 528 0 5 1635 243 133 0 0 chr5 137742882 137742927 -14794332 + (GGA)n Simple_repeat Simple_repeat 3 47 0 5 1635 363 344 8 23 chr5 137744438 137744569 -14792690 - ID_B1 SINE B4 -33 191 63 5 1635 216 0 0 0 chr5 137744905 137744929 -14792330 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 5 1635 409 181 80 60 chr5 137745171 137745271 -14791988 - B1F2 SINE Alu -2 147 46 5 1635 489 223 46 0 chr5 137745305 137745435 -14791824 - B1_Mur1 SINE Alu 0 149 14 5 1635 311 293 169 12 chr5 137745672 137745914 -14791345 - Charlie1a DNA MER1_type -653 802 523 5 1635 380 260 48 9 chr5 137746529 137746634 -14790625 + PB1D10 SINE Alu 1 109 -8 5 1635 596 222 116 50 chr5 137746647 137746846 -14790413 + B3 SINE B2 1 212 -4 5 1635 860 84 7 84 chr5 137746851 137746994 -14790265 + B1_Mur4 SINE Alu 13 144 -6 5 1635 429 298 0 26 chr5 137747030 137747147 -14790112 + B3A SINE B2 4 117 -81 5 1635 265 245 0 0 chr5 137747249 137747302 -14789957 - PB1D9 SINE Alu -6 114 62 5 1635 471 189 221 7 chr5 137747341 137747495 -14789764 + B2_Mm2 SINE B2 8 194 -1 5 1635 738 236 8 115 chr5 137747585 137747820 -14789439 + B3 SINE B2 2 211 -5 5 1635 229 260 0 0 chr5 137747916 137747966 -14789293 + ID_B1 SINE B4 141 190 -34 5 1635 21 0 0 0 chr5 137748797 137748818 -14788441 + GC_rich Low_complexity Low_complexity 1 21 0 5 1635 261 333 24 49 chr5 137749584 137749707 -14787552 + PB1 SINE Alu 1 120 -7 5 1635 635 234 39 17 chr5 137749725 137749903 -14787356 + B3A SINE B2 15 196 -2 5 1635 622 208 8 0 chr5 137749918 137750043 -14787216 - B1_Mm SINE Alu -5 142 17 5 1635 846 131 0 62 chr5 137750077 137750223 -14787036 + B1_Mus2 SINE Alu 5 141 -6 5 1635 238 274 0 0 chr5 137750261 137750312 -14786947 + ID4_ SINE ID 12 62 -21 5 1635 486 330 12 104 chr5 137750341 137750581 -14786678 + ID_B1 SINE B4 1 218 -6 5 1635 548 182 67 9 chr5 137750970 137751093 -14786166 - B1_Mur2 SINE Alu -16 134 5 5 1635 471 283 0 0 chr5 137752334 137752433 -14784826 + PB1D10 SINE Alu 6 104 -13 5 1635 660 91 0 0 chr5 137752433 137752543 -14784716 + (GGAA)n Simple_repeat Simple_repeat 1 110 0 5 1635 899 212 57 19 chr5 137752616 137752827 -14784432 + ID_B1 SINE B4 5 223 -1 5 1635 231 286 44 79 chr5 137753485 137753599 -14783660 - MER77 LTR ERVL -445 162 53 5 1635 705 216 158 6 chr5 137753651 137753828 -14783431 - ID_B1 SINE B4 0 224 21 5 1636 568 281 0 0 chr5 137757478 137757606 -14779653 - B1_Mur1 SINE Alu -1 148 21 5 1636 322 338 14 40 chr5 137757606 137757626 -14779633 - ID_B1 SINE B4 -1 223 80 5 1636 517 248 16 0 chr5 137757622 137757747 -14779512 - ID_B1 SINE B4 0 224 98 5 1636 3189 63 10 0 chr5 137757779 137758175 -14779084 + MTB LTR MaLR 1 400 0 5 1636 639 203 0 25 chr5 137758286 137758407 -14778852 + PB1D7 SINE Alu 1 118 -2 5 1636 422 167 12 23 chr5 137758460 137758546 -14778713 - PB1D10 SINE Alu -29 88 4 5 1636 325 292 48 40 chr5 137758751 137758876 -14778383 - MIR SINE MIR -50 212 87 5 1636 255 257 0 14 chr5 137759080 137759151 -14778108 - PB1D10 SINE Alu -2 115 46 5 1636 476 292 0 0 chr5 137759165 137759278 -14777981 + PB1D10 SINE Alu 5 117 0 5 1636 308 261 284 0 chr5 137759303 137759391 -14777868 - PB1D9 SINE Alu -6 114 2 5 1636 303 71 0 0 chr5 137759395 137759437 -14777822 + (CACCAT)n Simple_repeat Simple_repeat 2 43 0 5 1636 302 304 0 0 chr5 137759466 137759545 -14777714 - RSINE1 SINE B4 -22 143 65 5 1636 501 260 198 0 chr5 137759549 137759741 -14777518 - B4A SINE B4 -58 234 5 5 1636 268 275 0 14 chr5 137760105 137760175 -14777084 + ID_B1 SINE B4 88 156 -68 5 1636 538 200 133 0 chr5 137760178 137760298 -14776961 + B1_Mur4 SINE Alu 6 141 -9 5 1636 243 122 0 0 chr5 137760314 137760363 -14776896 + (A)n Simple_repeat Simple_repeat 1 49 0 5 1636 24 32 0 0 chr5 137760415 137760446 -14776813 + AT_rich Low_complexity Low_complexity 1 31 0 5 1636 1532 83 4 4 chr5 137760501 137760929 -14776330 + ZP3AR Satellite Satellite 1 427 0 5 1636 220 317 17 0 chr5 137760895 137760955 -14776304 + ID4 SINE ID 6 66 -17 5 1636 268 314 108 0 chr5 137761132 137761234 -14776025 - PB1D10 SINE Alu -4 113 1 5 1636 297 291 127 0 chr5 137761344 137761423 -14775836 + 5S rRNA rRNA 2 90 -31 5 1636 326 306 74 0 chr5 137761531 137761639 -14775620 + ID_B1 SINE B4 4 119 -105 5 1636 244 116 87 0 chr5 137761645 137761714 -14775545 + (CACTG)n Simple_repeat Simple_repeat 3 77 0 5 1636 345 292 58 52 chr5 137761722 137761877 -14775382 + ID_B1 SINE B4 69 224 0 5 1636 766 264 6 0 chr5 137761878 137762041 -14775218 + RSINE1 SINE B4 2 165 0 5 1636 652 163 23 6 chr5 137762041 137762214 -14775045 + (CA)n Simple_repeat Simple_repeat 1 176 0 5 1636 991 137 14 7 chr5 137762235 137762382 -14774877 - B1_Mus1 SINE Alu 0 148 1 5 1636 451 277 18 0 chr5 137762798 137762910 -14774349 + PB1D10 SINE Alu 2 115 -2 5 1636 252 300 0 0 chr5 137762922 137762982 -14774277 + ID4_ SINE ID 22 81 -2 5 1636 449 59 0 29 chr5 137762988 137763058 -14774201 + (CAGAGA)n Simple_repeat Simple_repeat 2 69 0 5 1636 1552 42 23 0 chr5 137763117 137763497 -14773762 + ZP3AR Satellite Satellite 1 388 -1 5 1636 583 269 94 0 chr5 137764450 137764599 -14772660 + RSINE1 SINE B4 3 165 0 5 1636 640 232 72 0 chr5 137764646 137764784 -14772475 + B1_Mur1 SINE Alu 2 149 0 5 1636 695 298 0 18 chr5 137764838 137765009 -14772250 + ID_B1 SINE B4 4 171 -53 5 1636 479 162 107 41 chr5 137765190 137765312 -14771947 + B1F SINE Alu 19 148 -1 5 1636 238 320 51 0 chr5 137765320 137765398 -14771861 + ID2 SINE ID 2 83 0 5 1636 246 276 0 0 chr5 137765401 137765414 -14771845 + B4A SINE B4 81 138 -154 5 1636 522 235 14 49 chr5 137765414 137765459 -14771800 + B1_Mur2 SINE Alu 12 53 -96 5 1636 1701 16 0 20 chr5 137765459 137765656 -14771603 + B2_Mm1a SINE B2 1 193 0 5 1636 522 235 14 49 chr5 137765656 137765753 -14771506 + B1_Mur2 SINE Alu 54 149 0 5 1636 690 159 0 0 chr5 137765791 137766028 -14771231 + (TG)n Simple_repeat Simple_repeat 1 237 0 5 1636 198 160 0 0 chr5 137766286 137766336 -14770923 + T-rich Low_complexity Low_complexity 1 50 0 5 1636 1197 22 0 0 chr5 137766350 137766485 -14770774 - B1_Mus1 SINE Alu -12 136 2 5 1636 282 281 13 152 chr5 137766983 137767003 -14770256 - YREP_Mm Unknown Unknown -1501 311 232 6 1636 500 212 30 119 chr5 137767003 137767081 -14770178 + ID_B1 SINE B4 103 168 -56 6 1636 975 144 104 95 chr5 137767081 137767303 -14769956 - URR1B DNA MER1_type 0 225 2 6 1636 282 281 13 152 chr5 137767303 137767355 -14769904 - YREP_Mm Unknown Unknown -1581 231 182 6 1636 395 226 108 0 chr5 137767387 137767480 -14769779 + PB1D7 SINE Alu 13 115 -5 6 1636 431 221 182 32 chr5 137767570 137767724 -14769535 + B4A SINE B4 2 178 -114 6 1636 198 0 0 0 chr5 137767746 137767768 -14769491 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1636 903 149 28 0 chr5 137767818 137767959 -14769300 + B1_Mur4 SINE Alu 1 145 -5 6 1636 212 179 36 0 chr5 137767959 137767970 -14769289 + (TAAG)n Simple_repeat Simple_repeat 4 14 0 6 1636 1263 85 5 156 chr5 137767970 137768194 -14769065 + B2_Mm1a SINE B2 1 190 -3 6 1636 212 179 36 0 chr5 137768194 137768238 -14769021 + (TAAG)n Simple_repeat Simple_repeat 3 48 0 6 1636 974 117 22 0 chr5 137768305 137768442 -14768817 - B1_Mur3 SINE Alu -5 144 5 6 1636 1038 216 9 35 chr5 137769210 137769440 -14767819 - ID_B1 SINE B4 0 224 1 6 1636 322 167 120 56 chr5 137770176 137770284 -14766975 + RMER30 DNA MER1_type 1 115 -87 6 1636 288 315 11 0 chr5 137770307 137770396 -14766863 + RSINE1 SINE B4 7 96 -69 6 1636 21 0 0 31 chr5 137770406 137770425 -14766834 + AT_rich Low_complexity Low_complexity 1 19 0 6 1636 1367 85 26 0 chr5 137770425 137770614 -14766645 - B2_Mm2 SINE B2 0 195 2 6 1636 21 0 0 31 chr5 137770614 137770626 -14766633 + AT_rich Low_complexity Low_complexity 1 12 0 6 1636 333 0 0 0 chr5 137770674 137770711 -14766548 + (CA)n Simple_repeat Simple_repeat 2 38 0 6 1636 252 0 0 0 chr5 137770711 137770738 -14766521 + (GA)n Simple_repeat Simple_repeat 2 29 0 6 1636 237 83 0 0 chr5 137770738 137770773 -14766486 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1636 629 267 7 13 chr5 137770779 137770931 -14766328 + ID_B1 SINE B4 20 170 -54 6 1636 225 196 0 0 chr5 137770937 137770983 -14766276 + T-rich Low_complexity Low_complexity 5 50 0 6 1636 801 193 57 0 chr5 137770983 137771123 -14766136 - B1_Mur2 SINE Alu 0 149 2 6 1636 1142 209 64 50 chr5 137771133 137771467 -14765792 + MT2B LTR ERVL 205 547 -54 6 1636 200 206 0 0 chr5 137771467 137771501 -14765758 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1636 229 279 122 15 chr5 137771589 137771720 -14765539 + RSINE1 SINE B4 9 153 -12 6 1636 377 275 22 22 chr5 137771908 137772042 -14765217 - Charlie12 DNA MER1_type -2739 134 1 6 1636 491 248 17 0 chr5 137771926 137772043 -14765216 + RMER30 DNA MER1_type 84 202 0 6 1636 27 0 0 0 chr5 137772576 137772603 -14764656 + AT_rich Low_complexity Low_complexity 1 27 0 6 1636 956 150 201 6 chr5 137772606 137772780 -14764479 - B3 SINE B2 -6 210 3 6 1636 315 205 51 0 chr5 137772786 137772864 -14764395 - ID_B1 SINE B4 0 224 143 6 1636 262 283 93 9 chr5 137772864 137772893 -14764366 - PB1D9 SINE Alu 0 120 5 6 1636 453 312 0 8 chr5 137772905 137773031 -14764228 - ID_B1 SINE B4 -21 203 79 6 1636 279 180 131 0 chr5 137773092 137773153 -14764106 - tRNA-Ala-GCY_ tRNA tRNA -1 74 6 6 1636 324 88 140 0 chr5 137773102 137773159 -14764100 - ID4 SINE ID -13 70 6 6 1636 315 0 0 0 chr5 137774014 137774049 -14763210 + (CA)n Simple_repeat Simple_repeat 2 36 0 6 1636 1221 41 14 0 chr5 137775372 137775518 -14761741 + B1_Mus1 SINE Alu 1 148 0 6 1636 463 288 8 8 chr5 137775689 137775808 -14761451 - ID_B1 SINE B4 -23 201 83 6 1636 991 216 44 0 chr5 137776063 137776267 -14760992 - B3 SINE B2 -3 213 1 6 1636 603 228 226 10 chr5 137776407 137776602 -14760657 + B4A SINE B4 27 263 -29 6 1636 272 280 21 138 chr5 137776744 137776889 -14760370 - B1F2 SINE Alu -21 128 1 6 1636 418 252 121 8 chr5 137776766 137776890 -14760369 - ID_B1 SINE B4 -6 218 81 6 1636 446 174 38 67 chr5 137776925 137777030 -14760229 - B1_Mus2 SINE Alu -6 141 40 6 1636 848 107 0 101 chr5 137777033 137777231 -14760028 + (TCTCTG)n Simple_repeat Simple_repeat 2 179 0 6 1636 618 270 0 0 chr5 137777151 137777329 -14759930 + CT-rich Low_complexity Low_complexity 2 179 0 6 1636 259 211 34 34 chr5 137777334 137777393 -14759866 - PB1D9 SINE Alu -61 59 1 6 1636 1116 69 14 14 chr5 137777414 137777561 -14759698 - B1_Mus1 SINE Alu -1 147 1 6 1636 466 313 0 30 chr5 137777841 137777976 -14759283 + ID_B1 SINE B4 83 213 -11 6 1636 444 118 0 0 chr5 137778029 137778097 -14759162 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 6 1636 567 189 81 16 chr5 137778097 137778221 -14759038 - B1_Mur1 SINE Alu -1 148 17 6 1636 460 250 52 22 chr5 137778288 137778437 -14758822 - B3 SINE B2 -51 165 14 6 1636 964 239 53 8 chr5 137778685 137778930 -14758329 - MTEa LTR MaLR -121 258 3 6 1636 889 195 108 0 chr5 137779039 137779224 -14758035 + B3 SINE B2 1 205 -11 6 1636 365 257 59 0 chr5 137779330 137779431 -14757828 + PB1D10 SINE Alu 1 107 -10 6 1636 687 25 0 0 chr5 137779431 137779512 -14757747 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 6 1636 23 0 0 0 chr5 137779771 137779794 -14757465 + AT_rich Low_complexity Low_complexity 1 23 0 6 1636 225 0 0 0 chr5 137780322 137780347 -14756912 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1636 257 219 0 14 chr5 137781097 137781171 -14756088 + (CA)n Simple_repeat Simple_repeat 1 73 0 6 1636 732 149 67 7 chr5 137781370 137781505 -14755754 + B1_Mur3 SINE Alu 7 149 0 6 1636 446 0 19 0 chr5 137781926 137781980 -14755279 + (TG)n Simple_repeat Simple_repeat 2 56 0 6 1636 541 294 90 68 chr5 137782032 137782298 -14754961 - B4A SINE B4 -11 281 10 6 1636 339 258 68 30 chr5 137782325 137782340 -14754919 - B1F1 SINE Alu 0 149 62 6 1636 472 209 27 9 chr5 137782340 137782451 -14754808 - ID_B1 SINE B4 -12 212 100 6 1636 198 0 0 0 chr5 137782458 137782480 -14754779 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6 1636 310 243 14 0 chr5 137782480 137782550 -14754709 - PB1D7 SINE Alu -12 108 38 6 1636 203 138 0 0 chr5 137782691 137782720 -14754539 + (TTC)n Simple_repeat Simple_repeat 3 31 0 6 1636 655 114 443 0 chr5 137782734 137782874 -14754385 - B3 SINE B2 -11 205 4 6 1636 512 304 16 47 chr5 137782876 137783066 -14754193 - RMER15-int LTR ERVL -2596 2403 2220 6 1636 30 45 0 0 chr5 137783125 137783169 -14754090 + AT_rich Low_complexity Low_complexity 1 44 0 6 1636 758 141 31 0 chr5 137783169 137783297 -14753962 - RMER10B LTR ERVL -266 132 1 6 1636 1057 129 33 22 chr5 137783356 137783538 -14753721 - B2_Mm2 SINE B2 0 195 12 6 1636 180 111 0 0 chr5 137783575 137783602 -14753657 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 6 1636 941 115 0 0 chr5 137783630 137783769 -14753490 - B1_Mus2 SINE Alu 0 147 9 6 1636 198 0 0 0 chr5 137784234 137784256 -14753003 + (T)n Simple_repeat Simple_repeat 1 22 0 6 1636 250 391 40 7 chr5 137784454 137784606 -14752653 - RMER15-int LTR ERVL -3346 1653 1497 6 1636 347 41 20 0 chr5 137784622 137784671 -14752588 + (TTG)n Simple_repeat Simple_repeat 2 51 0 6 1636 1075 97 14 0 chr5 137784825 137784970 -14752289 - B1_Mus1 SINE Alu -1 147 1 6 1636 828 127 15 0 chr5 137784993 137785127 -14752132 + B1_Mus1 SINE Alu 9 144 -4 6 1636 192 40 0 0 chr5 137785127 137785152 -14752107 + (CAA)n Simple_repeat Simple_repeat 1 25 0 6 1636 565 156 160 24 chr5 137785192 137785317 -14751942 - B3 SINE B2 -10 206 65 6 1636 444 19 0 0 chr5 137785317 137785370 -14751889 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1636 770 235 12 12 chr5 137785373 137785537 -14751722 - B3A SINE B2 -34 164 1 6 1636 473 237 64 64 chr5 137785768 137785908 -14751351 + ID_B1 SINE B4 84 223 -1 6 1636 372 275 11 11 chr5 137785908 137786000 -14751259 + RSINE1 SINE B4 5 96 -69 6 1636 939 228 35 0 chr5 137786024 137786221 -14751038 - B3 SINE B2 -11 205 2 6 1636 225 83 0 0 chr5 137786276 137786312 -14750947 + (TG)n Simple_repeat Simple_repeat 1 36 0 6 1636 317 305 11 0 chr5 137786394 137786489 -14750770 + ID_B1 SINE B4 114 209 -15 6 1636 714 255 97 34 chr5 137786578 137786785 -14750474 + ID_B1 SINE B4 5 224 0 6 1636 749 288 29 72 chr5 137786822 137787099 -14750160 + B4A SINE B4 14 278 -14 6 1636 444 19 0 0 chr5 137787107 137787160 -14750099 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1636 565 248 46 13 chr5 137787461 137787612 -14749647 - RSINE1 SINE B4 -2 163 8 6 1636 258 211 28 0 chr5 137787696 137787767 -14749492 + C-rich Low_complexity Low_complexity 5 77 0 6 1636 413 216 109 25 chr5 137787783 137787902 -14749357 - B1_Mur4 SINE Alu 0 150 22 6 1636 326 301 82 15 chr5 137787902 137787918 -14749341 - ID_B1 SINE B4 0 224 81 6 1636 231 88 0 0 chr5 137788007 137788041 -14749218 + (CAGAGA)n Simple_repeat Simple_repeat 3 36 0 6 1636 331 279 63 98 chr5 137788045 137788069 -14749190 + ID SINE ID 34 53 -171 6 1636 207 0 0 0 chr5 137788069 137788092 -14749167 + (TGGGGG)n Simple_repeat Simple_repeat 5 27 0 6 1636 331 279 63 98 chr5 137788092 137788210 -14749049 + ID_B1 SINE B4 54 171 -53 6 1636 1161 208 0 14 chr5 137788425 137788635 -14748624 - B3 SINE B2 -5 211 5 6 1636 1671 31 0 20 chr5 137788662 137788858 -14748401 - B2_Mm1t SINE B2 0 193 2 6 1636 498 295 14 41 chr5 137788911 137789056 -14748203 - RSINE1 SINE B4 -23 142 2 6 1636 342 0 0 0 chr5 137789337 137789375 -14747884 + (TC)n Simple_repeat Simple_repeat 2 39 0 6 1636 441 0 0 0 chr5 137789375 137789423 -14747836 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1636 226 284 113 38 chr5 137789445 137789551 -14747708 - ID_B1 SINE B4 -89 135 22 7 1636 212 0 36 0 chr5 137794230 137794258 -14743001 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7 1636 635 292 91 5 chr5 137794260 137794381 -14742878 - ID_B1 SINE B4 -13 211 78 7 1636 1048 77 19 0 chr5 137794381 137794536 -14742723 + (TTTTC)n Simple_repeat Simple_repeat 2 159 0 7 1636 635 292 91 5 chr5 137794536 137794600 -14742659 - ID SINE ID -147 77 10 7 1636 507 73 0 0 chr5 137794655 137794723 -14742536 + (TTCTCC)n Simple_repeat Simple_repeat 3 70 0 7 1636 576 0 0 0 chr5 137794725 137794789 -14742470 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 7 1636 480 227 55 0 chr5 137795055 137795165 -14742094 - RSINE1 SINE B4 -21 144 29 7 1636 315 0 0 0 chr5 137795860 137795895 -14741364 + (TG)n Simple_repeat Simple_repeat 1 35 0 7 1636 703 223 0 0 chr5 137796100 137796230 -14741029 - ID_B1 SINE B4 -1 223 94 7 1636 347 236 27 158 chr5 137796230 137796244 -14741015 - PB1 SINE Alu 0 125 1 7 1636 777 196 0 14 chr5 137796262 137796402 -14740857 - B1_Mur4 SINE Alu -1 149 12 7 1636 628 169 244 23 chr5 137796407 137796583 -14740676 - B3 SINE B2 0 216 2 7 1636 233 243 79 26 chr5 137796632 137796708 -14740551 - PB1 SINE Alu -7 120 41 7 1636 470 17 17 0 chr5 137796779 137796838 -14740421 + (TG)n Simple_repeat Simple_repeat 2 61 0 7 1636 380 267 59 0 chr5 137796839 137796940 -14740319 - RSINE1 SINE B4 -58 107 1 7 1636 21 0 0 0 chr5 137796958 137796979 -14740280 + AT_rich Low_complexity Low_complexity 1 21 0 7 1636 812 207 101 25 chr5 137796982 137797180 -14740079 - B3 SINE B2 -1 215 3 7 1636 425 228 39 4 chr5 137797224 137797337 -14739922 - B1F2 SINE Alu -2 115 3 7 1636 282 308 84 0 chr5 137797248 137797355 -14739904 - B4 SINE B4 -108 184 69 7 1636 1253 162 24 14 chr5 137797379 137797592 -14739667 - B3 SINE B2 0 216 2 7 1636 633 225 0 23 chr5 137797595 137797727 -14739532 - ID_B1 SINE B4 -2 222 94 7 1636 625 263 88 31 chr5 137798074 137798125 -14739134 + ID SINE ID 17 78 -146 7 1636 743 225 0 0 chr5 137798125 137798267 -14738992 + B1_Mur3 SINE Alu 4 145 -4 7 1636 327 176 0 0 chr5 137798266 137798317 -14738942 + ID_B1 SINE B4 159 209 -15 7 1636 339 85 0 0 chr5 137798345 137798392 -14738867 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1636 382 239 23 6 chr5 137798406 137798583 -14738676 + (TA)n Simple_repeat Simple_repeat 1 180 0 7 1636 316 113 16 31 chr5 137800275 137800339 -14736920 + CT-rich Low_complexity Low_complexity 3 65 0 7 1636 1283 94 10 45 chr5 137800341 137800542 -14736717 - B2_Mm2 SINE B2 0 195 2 7 1636 617 209 8 30 chr5 137800616 137800749 -14736510 - B3A SINE B2 -67 131 2 7 1636 309 231 123 45 chr5 137800753 137800864 -14736395 - PB1D10 SINE Alu 0 120 1 7 1636 648 302 56 0 chr5 137800986 137801165 -14736094 + ID_B1 SINE B4 23 211 -13 7 1636 714 209 73 47 chr5 137801351 137801542 -14735717 - B3 SINE B2 -1 215 20 7 1636 1057 244 42 150 chr5 137801838 137802224 -14735035 - MTE2a LTR MaLR -13 366 23 7 1636 203 161 0 0 chr5 137802828 137802859 -14734400 + polypurine Low_complexity Low_complexity 2 32 0 7 1636 334 215 152 0 chr5 137802876 137802955 -14734304 + PB1D10 SINE Alu 26 116 -1 7 1636 324 267 122 24 chr5 137802973 137803096 -14734163 - B4A SINE B4 -157 135 1 7 1636 342 228 13 0 chr5 137803118 137803197 -14734062 - PB1D10 SINE Alu -5 112 33 7 1636 627 244 15 2 chr5 137803228 137803396 -14733863 - B3A SINE B2 -7 209 36 7 1636 239 329 14 0 chr5 137803461 137803534 -14733725 + ID4 SINE ID 2 75 -8 7 1636 268 336 41 50 chr5 137803778 137803958 -14733301 + MIRc SINE MIR 25 206 -56 7 1636 214 73 24 24 chr5 137803958 137804000 -14733259 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 7 1636 40 21 0 0 chr5 137804000 137804047 -14733212 + AT_rich Low_complexity Low_complexity 1 47 0 7 1636 758 163 20 0 chr5 137804077 137804224 -14733035 + ZP3AR Satellite Satellite 39 188 -24 7 1636 1248 41 0 0 chr5 137804845 137804992 -14732267 - B1_Mus2 SINE Alu 0 147 1 7 1636 816 146 0 7 chr5 137804995 137805133 -14732126 - B1_Mur3 SINE Alu -1 148 12 7 1636 359 292 26 99 chr5 137804999 137805151 -14732108 - B4 SINE B4 -71 221 81 7 1636 405 233 136 17 chr5 137805164 137805282 -14731977 - B1_Mur2 SINE Alu -6 143 12 7 1636 727 130 15 8 chr5 137805299 137805431 -14731828 + CT-rich Low_complexity Low_complexity 1 133 0 7 1636 608 158 171 55 chr5 137805459 137805480 -14731779 - B3 SINE B2 -1 215 201 7 1636 198 0 0 0 chr5 137805480 137805502 -14731757 + (TTTTA)n Simple_repeat Simple_repeat 5 26 0 7 1636 608 158 171 55 chr5 137805502 137805661 -14731598 - B3 SINE B2 -16 200 14 7 1636 435 278 0 10 chr5 137805661 137805759 -14731500 - PB1D10 SINE Alu -12 105 9 7 1636 450 314 75 31 chr5 137805671 137805832 -14731427 - ID_B1 SINE B4 -48 176 9 7 1636 562 243 42 28 chr5 137805837 137805981 -14731278 - B1F1 SINE Alu -1 148 3 7 1636 1252 167 13 35 chr5 137806312 137806541 -14730718 - URR1A DNA MER1_type 0 226 3 7 1636 663 192 58 174 chr5 137806958 137807217 -14730042 + B4A SINE B4 1 229 -63 7 1636 555 211 28 0 chr5 137807226 137807325 -14729934 + B1_Mur1 SINE Alu 9 110 -39 7 1636 512 295 67 0 chr5 137807325 137807474 -14729785 + RSINE1 SINE B4 1 159 -6 7 1636 222 62 0 0 chr5 137807635 137807667 -14729592 + (TC)n Simple_repeat Simple_repeat 2 33 0 7 1636 207 0 0 0 chr5 137807667 137807690 -14729569 + (CA)n Simple_repeat Simple_repeat 1 23 0 7 1636 312 264 93 19 chr5 137808121 137808229 -14729030 + B1F SINE Alu 17 132 -17 7 1636 210 71 0 0 chr5 137808262 137808290 -14728969 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1636 225 337 0 24 chr5 137808368 137808453 -14728806 - ID4 SINE ID 0 83 1 7 1636 1494 83 14 8 chr5 137808458 137808776 -14728483 - ZP3AR Satellite Satellite -17 319 1 7 1636 323 256 11 11 chr5 137809273 137809360 -14727899 + PB1D10 SINE Alu 29 115 -2 7 1636 1194 139 4 0 chr5 137809369 137809609 -14727650 + ZP3AR Satellite Satellite 1 240 0 7 1636 346 206 0 0 chr5 137809660 137809723 -14727536 + B2_Mm2 SINE B2 3 65 -130 7 1636 834 101 60 73 chr5 137809757 137809907 -14727352 + B1_Mus1 SINE Alu 1 148 0 7 1636 450 275 0 44 chr5 137810265 137810379 -14726880 + PB1D7 SINE Alu 9 117 -3 7 1636 439 211 181 31 chr5 137810415 137810542 -14726717 + B1F SINE Alu 1 146 -3 7 1636 234 308 34 10 chr5 137811292 137811396 -14725863 + B1F1 SINE Alu 14 120 0 7 1636 348 241 41 74 chr5 137811399 137811520 -14725739 + ID_B1 SINE B4 103 219 -5 7 1636 933 234 107 22 chr5 137811560 137811865 -14725394 - MTE2b LTR MaLR 0 379 21 7 1636 387 263 43 9 chr5 137812314 137812426 -14724833 + B4A SINE B4 115 230 -62 7 1636 699 261 81 17 chr5 137812426 137812660 -14724599 + B4A SINE B4 1 249 -43 7 1636 504 0 0 0 chr5 137812660 137812716 -14724543 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1636 639 250 0 0 chr5 137812784 137812908 -14724351 + RSINE1 SINE B4 35 158 -7 7 1636 239 270 0 75 chr5 137812941 137813021 -14724238 + B4A SINE B4 217 290 -2 7 1636 249 333 43 0 chr5 137814071 137814164 -14723095 + MIR3 SINE MIR 112 208 0 7 1636 212 283 151 11 chr5 137814316 137814409 -14722850 + PB1D10 SINE Alu 9 114 -3 7 1636 37 39 0 0 chr5 137815683 137815734 -14721525 + AT_rich Low_complexity Low_complexity 1 51 0 7 1636 452 221 19 9 chr5 137816864 137816969 -14720290 - PB1D10 SINE Alu 0 117 12 7 1636 967 71 71 0 chr5 137817748 137817875 -14719384 + B1_Mus1 SINE Alu 1 136 -12 7 1636 386 314 66 0 chr5 137817911 137818032 -14719227 + RSINE1 SINE B4 7 135 -30 7 1636 453 270 129 59 chr5 137818068 137818254 -14719005 + B4 SINE B4 1 205 -87 7 1636 1129 27 0 82 chr5 137818254 137818413 -14718846 + B1_Mus1 SINE Alu 3 148 0 7 1636 453 270 129 59 chr5 137818413 137818482 -14718777 + B4 SINE B4 206 274 -18 7 1636 454 250 144 0 chr5 137818569 137818719 -14718540 + B3A SINE B2 36 209 -7 7 1636 292 226 132 88 chr5 137818746 137818882 -14718377 + RMER15 LTR ERVL 40 181 -394 7 1636 253 265 232 42 chr5 137818910 137819052 -14718207 + RMER15 LTR ERVL 289 457 -118 7 1636 412 278 113 0 chr5 137819267 137819382 -14717877 + ID_B1 SINE B4 51 178 -46 7 1636 336 289 103 0 chr5 137819296 137819393 -14717866 + PB1D10 SINE Alu 5 111 -6 7 1636 406 305 86 7 chr5 137819690 137819842 -14717417 + RSINE1 SINE B4 2 165 0 7 1636 28 0 0 0 chr5 137819864 137819892 -14717367 + AT_rich Low_complexity Low_complexity 1 28 0 7 1636 449 217 109 34 chr5 137820434 137820553 -14716706 - RSINE1 SINE B4 -32 133 6 7 1636 227 167 0 0 chr5 137820576 137820612 -14716647 + B4 SINE B4 246 281 -11 7 1636 347 216 57 76 chr5 137820900 137821005 -14716254 - B1F SINE Alu 0 149 47 7 1636 405 0 0 0 chr5 137821039 137821084 -14716175 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1636 597 83 0 0 chr5 137821085 137821169 -14716090 + (CCA)n Simple_repeat Simple_repeat 1 84 0 7 1636 234 292 77 77 chr5 137821271 137821453 -14715806 + YREP_Mm Unknown Unknown 113 294 -1518 7 1636 580 296 7 7 chr5 137821337 137821483 -14715776 - ID_B1 SINE B4 -4 220 75 7 1636 380 302 25 0 chr5 137821512 137821631 -14715628 + RSINE1 SINE B4 8 129 -36 7 1636 189 0 0 0 chr5 137821633 137821654 -14715605 + (CTAA)n Simple_repeat Simple_repeat 3 23 0 7 1636 693 118 0 0 chr5 137822348 137822458 -14714801 + (TG)n Simple_repeat Simple_repeat 1 110 0 7 1636 620 181 172 7 chr5 137822513 137822658 -14714601 - B3 SINE B2 -9 207 39 8 1636 748 44 292 0 chr5 137822715 137822828 -14714431 - B1_Mus1 SINE Alu -1 147 2 8 1636 316 241 78 33 chr5 137822829 137822919 -14714340 - B4A SINE B4 -196 96 3 8 1636 581 223 58 0 chr5 137822947 137823068 -14714191 - B1_Mur1 SINE Alu -13 136 9 8 1636 247 318 0 29 chr5 137823009 137823077 -14714182 - B4A SINE B4 -139 153 88 8 1636 533 213 74 0 chr5 137823939 137824047 -14713212 + PB1D7 SINE Alu 5 120 0 8 1636 955 180 106 20 chr5 137824050 137824248 -14713011 + B3 SINE B2 1 215 -1 8 1636 456 248 124 62 chr5 137824295 137824504 -14712755 + B4A SINE B4 8 206 -86 8 1636 437 34 17 0 chr5 137824504 137824563 -14712696 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1636 420 288 130 130 chr5 137824563 137824637 -14712622 + B4 SINE B4 207 291 -1 8 1636 363 44 0 0 chr5 137824658 137824703 -14712556 + (CA)n Simple_repeat Simple_repeat 2 46 0 8 1636 809 265 51 23 chr5 137825178 137825385 -14711874 + B4 SINE B4 1 213 -79 8 1636 3881 163 40 22 chr5 137825385 137826181 -14711078 + RMER12 LTR ERVK 4 1012 -310 8 1636 1006 140 6 6 chr5 137826181 137826361 -14710898 + T-rich Low_complexity Low_complexity 1 180 0 8 1636 686 260 52 78 chr5 137826361 137826540 -14710719 + RMER12 LTR ERVK 1013 1187 -135 8 1636 764 244 108 58 chr5 137826649 137826927 -14710332 + B4A SINE B4 1 292 0 8 1636 204 40 0 0 chr5 137827071 137827096 -14710163 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 8 1636 985 182 75 5 chr5 137827110 137827298 -14709961 + ID_B1 SINE B4 6 206 -18 8 1636 1254 54 0 0 chr5 137828541 137828689 -14708570 - B1_Mus1 SINE Alu 0 148 1 8 1636 462 269 22 22 chr5 137828701 137828838 -14708421 - ID_B1 SINE B4 0 224 88 8 1636 201 39 0 0 chr5 137828845 137828871 -14708388 + (TCTTG)n Simple_repeat Simple_repeat 2 27 0 8 1636 404 192 131 0 chr5 137828909 137829008 -14708251 - PB1D10 SINE Alu -4 113 2 8 1636 661 203 0 30 chr5 137829364 137829496 -14707763 + RSINE1 SINE B4 12 139 -26 8 1636 277 312 118 59 chr5 137829496 137829511 -14707748 + B3A SINE B2 42 166 -32 8 1636 588 335 0 0 chr5 137829526 137829690 -14707569 + B3A SINE B2 1 164 -34 8 1636 543 78 0 0 chr5 137829699 137829776 -14707483 + (CA)n Simple_repeat Simple_repeat 1 77 0 8 1636 1414 69 5 0 chr5 137830758 137830994 -14706265 + ZP3AR Satellite Satellite 1 237 0 8 1636 234 271 34 0 chr5 137830967 137831026 -14706233 + ID4_ SINE ID 1 61 -22 8 1636 320 256 56 8 chr5 137831043 137831169 -14706090 + MER2 DNA MER2_type 112 243 -102 8 1636 545 330 116 5 chr5 137831222 137831411 -14705848 - B4 SINE B4 0 292 83 8 1636 341 282 109 17 chr5 137831444 137831563 -14705696 - RSINE1 SINE B4 -33 132 3 8 1636 481 200 10 10 chr5 137831563 137831657 -14705602 - B4 SINE B4 -197 95 2 8 1636 636 227 161 5 chr5 137831671 137831870 -14705389 - 7SK RNA RNA -95 236 7 8 1636 811 306 5 0 chr5 137831878 137832097 -14705162 - ID_B1 SINE B4 0 224 5 8 1636 362 228 10 80 chr5 137832100 137832200 -14705059 + MER2 DNA MER2_type 248 340 -5 8 1636 416 352 0 0 chr5 137832292 137832431 -14704828 - ID_B1 SINE B4 -5 219 81 8 1636 741 286 71 0 chr5 137832566 137832762 -14704497 + ID_B1 SINE B4 2 211 -13 8 1636 1295 253 82 26 chr5 137833408 137833749 -14703510 - Lx5 LINE L1 -3 7047 6688 8 1636 245 328 0 0 chr5 137833770 137833837 -14703422 + MER2B DNA MER2_type 7 73 -263 8 1636 297 0 0 0 chr5 137833878 137833911 -14703348 + (TG)n Simple_repeat Simple_repeat 2 34 0 8 1636 425 282 36 59 chr5 137834006 137834188 -14703071 - B4A SINE B4 -53 171 1 8 1636 254 150 0 0 chr5 137834579 137834619 -14702640 - L2b LINE L2 -2 3373 3334 8 1636 249 140 0 0 chr5 137834621 137834678 -14702581 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1636 674 283 37 0 chr5 137835059 137835248 -14702011 + ZP3AR Satellite Satellite 1 195 -2 8 1636 450 36 0 0 chr5 137835320 137835376 -14701883 + (TC)n Simple_repeat Simple_repeat 1 56 0 8 1636 252 292 172 93 chr5 137835427 137835578 -14701681 - B4A SINE B4 -128 164 2 8 1636 286 167 10 0 chr5 137835946 137836005 -14701254 - L2b LINE L2 -2 3385 3324 8 1636 509 0 16 0 chr5 137836042 137836103 -14701156 + (GA)n Simple_repeat Simple_repeat 1 62 0 8 1636 883 294 63 29 chr5 137836214 137836600 -14700659 + MTE2a LTR MaLR 11 417 -2 8 1636 246 351 22 45 chr5 137837076 137837210 -14700049 + ZP3AR Satellite Satellite 5 135 -77 8 1636 1477 171 0 55 chr5 137838173 137838651 -14698608 + ZP3AR Satellite Satellite 1 451 -1 8 1636 186 43 0 0 chr5 137838801 137838824 -14698435 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1636 544 262 71 32 chr5 137838842 137838996 -14698263 - RSINE1 SINE B4 -1 164 5 8 1636 495 0 0 0 chr5 137839018 137839073 -14698186 + (TC)n Simple_repeat Simple_repeat 2 56 0 8 1636 249 244 11 89 chr5 137839073 137839163 -14698096 - RSINE1 SINE B4 -1 164 82 8 1636 244 206 84 42 chr5 137839288 137839359 -14697900 - B4A SINE B4 -214 78 5 8 1636 356 88 0 17 chr5 137839710 137839768 -14697491 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 8 1636 187 271 21 0 chr5 137839769 137839817 -14697442 - L2b LINE L2 -2 3373 3325 8 1636 412 303 92 18 chr5 137840317 137840507 -14696752 + ZP3AR Satellite Satellite 1 204 -39 8 1636 260 236 0 0 chr5 137840458 137840513 -14696746 + ID4 SINE ID 2 56 -27 8 1636 234 0 0 0 chr5 137840532 137840558 -14696701 + (CAGC)n Simple_repeat Simple_repeat 2 27 0 8 1636 1730 11 0 0 chr5 137840635 137840821 -14696438 + B2_Mm1a SINE B2 1 186 -7 8 1636 980 193 43 34 chr5 137840831 137841040 -14696219 + B3 SINE B2 3 213 -3 8 1636 1967 178 57 55 chr5 137842048 137842122 -14695137 + RMER1B Other Other 626 696 -370 8 1636 1257 64 122 0 chr5 137842122 137842137 -14695122 - B2_Mm2 SINE B2 -2 193 179 8 1636 234 0 0 0 chr5 137842137 137842163 -14695096 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 8 1636 1257 64 122 0 chr5 137842163 137842319 -14694940 - B2_Mm2 SINE B2 -17 178 2 8 1636 1967 178 57 55 chr5 137842319 137842554 -14694705 + RMER1B Other Other 697 929 -137 8 1636 198 0 0 0 chr5 137842554 137842576 -14694683 + (GTTTG)n Simple_repeat Simple_repeat 1 22 0 8 1636 1967 178 57 55 chr5 137842576 137842705 -14694554 + RMER1B Other Other 930 1066 0 8 1636 478 301 7 7 chr5 137842749 137842893 -14694366 + ZP3AR Satellite Satellite 43 186 -26 8 1636 454 291 18 121 chr5 137842860 137842956 -14694303 + ID_B1 SINE B4 4 201 -21 8 1636 614 172 8 72 chr5 137842956 137843076 -14694183 + B1_Mur2 SINE Alu 7 118 -31 8 1636 652 290 56 73 chr5 137843076 137843460 -14693799 + RLTR16 LTR ERVK 1 433 -259 8 1636 1237 41 0 0 chr5 137843620 137843767 -14693492 - B1_Mus2 SINE Alu 0 147 1 8 1636 291 140 0 0 chr5 137843816 137843866 -14693393 + (A)n Simple_repeat Simple_repeat 1 50 0 8 1636 284 282 64 55 chr5 137844116 137844145 -14693114 - B3A SINE B2 -86 112 3 8 1636 430 165 12 12 chr5 137844145 137844225 -14693034 - B4 SINE B4 -210 82 3 8 1636 190 269 0 37 chr5 137844586 137844640 -14692619 - L2b LINE L2 -2 3373 3322 8 1636 698 241 38 12 chr5 137845200 137845433 -14691826 + ZP3AR Satellite Satellite 1 239 -42 8 1636 275 232 0 0 chr5 137845393 137845449 -14691810 + ID2 SINE ID 1 56 -27 8 1636 552 195 50 8 chr5 137845498 137845617 -14691642 - RSINE1 SINE B4 -40 125 2 8 1636 1177 232 55 114 chr5 137845693 137846109 -14691150 + RLTR20A LTR ERVK 52 450 -91 8 1636 414 0 0 0 chr5 137846109 137846155 -14691104 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1636 1177 232 55 114 chr5 137846155 137846245 -14691014 + RLTR20A LTR ERVK 451 527 -14 8 1636 234 310 56 74 chr5 137846370 137846384 -14690875 - B3A SINE B2 -92 106 1 8 1636 301 330 32 0 chr5 137846384 137846478 -14690781 - B4A SINE B4 -195 97 1 8 1636 555 271 19 81 chr5 137847245 137847454 -14689805 - B3A SINE B2 -2 196 1 8 1636 1260 54 0 0 chr5 137848546 137848694 -14688565 + B1_Mus1 SINE Alu 1 148 0 8 1636 188 256 0 0 chr5 137849227 137849270 -14687989 - L2b LINE L2 -2 3373 3331 8 1636 655 274 59 17 chr5 137849783 137850071 -14687188 + ZP3AR Satellite Satellite 1 299 0 8 1636 582 220 91 0 chr5 137850209 137850341 -14686918 - B1_Mur1 SINE Alu 0 149 6 8 1636 561 157 0 0 chr5 137850360 137850494 -14686765 + (TG)n Simple_repeat Simple_repeat 1 134 0 8 1636 227 241 18 18 chr5 137850494 137850549 -14686710 - RSINE1 SINE B4 0 165 111 8 1636 269 355 52 81 chr5 137850607 137850779 -14686480 - B4A SINE B4 -125 167 1 8 1636 242 267 0 0 chr5 137851146 137851206 -14686053 - L2b LINE L2 -2 3385 3324 8 1636 572 141 47 0 chr5 137852059 137852187 -14685072 + C-rich Low_complexity Low_complexity 4 137 0 8 1636 183 156 0 0 chr5 137852191 137852223 -14685036 + CT-rich Low_complexity Low_complexity 149 180 0 8 1636 340 324 19 84 chr5 137852428 137852583 -14684676 - B4A SINE B4 -144 148 4 8 1636 186 259 55 18 chr5 137852937 137852992 -14684267 - L2c LINE L2 -5 3382 3326 8 1636 1469 72 0 35 chr5 137854136 137854338 -14682921 - B2_Mm2 SINE B2 0 195 1 8 1636 184 159 133 22 chr5 137854348 137854393 -14682866 - L2b LINE L2 -2 3373 3324 8 1636 373 354 40 7 chr5 137855209 137855357 -14681902 - B4A SINE B4 -137 155 3 8 1636 714 211 94 62 chr5 137855816 137856008 -14681251 + B3A SINE B2 1 198 0 8 1636 701 324 17 7 chr5 137856555 137856932 -14680327 + ZP3AR Satellite Satellite 1 380 -2 8 1636 226 346 36 51 chr5 137857256 137857393 -14679866 - B4A SINE B4 -149 143 9 8 1636 519 320 16 16 chr5 137857839 137858023 -14679236 + B3A SINE B2 8 191 -7 8 1636 504 318 47 18 chr5 137858544 137859066 -14678193 + ZP3AR Satellite Satellite 1 536 -20 9 1636 1144 75 0 7 chr5 137859182 137859329 -14677930 + B1_Mm SINE Alu 1 146 -1 9 1636 297 20 39 20 chr5 137859338 137859389 -14677870 + (CAAAAA)n Simple_repeat Simple_repeat 4 55 0 9 1636 2400 145 32 30 chr5 137859424 137859830 -14677429 + MTB_Mm LTR MaLR 1 407 0 9 1636 238 163 61 0 chr5 137859949 137859998 -14677261 + CT-rich Low_complexity Low_complexity 3 54 0 9 1636 368 281 21 44 chr5 137860079 137860236 -14677023 - B4A SINE B4 -77 147 2 9 1636 534 278 112 15 chr5 137860680 137860877 -14676382 + B3 SINE B2 1 216 0 9 1636 588 301 12 0 chr5 137861427 137861590 -14675669 + ZP3AR Satellite Satellite 37 201 -11 9 1636 489 241 175 12 chr5 137861648 137861808 -14675451 + ZP3AR Satellite Satellite 26 211 -1 9 1636 200 277 0 0 chr5 137862031 137862078 -14675181 + CT-rich Low_complexity Low_complexity 3 49 0 9 1636 518 294 76 3 chr5 137862629 137862823 -14674436 + B3A SINE B2 7 214 -2 9 1636 617 255 47 53 chr5 137863340 137863626 -14673633 + ZP3AR Satellite Satellite 1 284 0 9 1636 845 113 23 0 chr5 137863734 137863867 -14673392 - B1_Mus2 SINE Alu 0 147 12 9 1636 243 0 0 0 chr5 137863955 137863982 -14673277 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1636 585 154 0 19 chr5 137863982 137864080 -14673179 - B1_Mur2 SINE Alu -6 143 46 9 1636 330 243 0 0 chr5 137864086 137864263 -14672996 + (TG)n Simple_repeat Simple_repeat 2 178 0 9 1636 320 71 0 0 chr5 137864301 137864343 -14672916 + MurSatRep1 Unknown Unknown 230 271 -1866 9 1636 1249 264 54 3 chr5 137864344 137864576 -14672683 + Lx5 LINE L1 6736 6980 -70 9 1636 252 0 0 0 chr5 137864576 137864604 -14672655 + (GGGGA)n Simple_repeat Simple_repeat 2 29 0 9 1636 1249 264 54 3 chr5 137864604 137864667 -14672592 + Lx5 LINE L1 6981 7046 -4 9 1636 303 321 0 0 chr5 137864733 137864814 -14672445 + (TG)n Simple_repeat Simple_repeat 2 82 0 9 1636 383 282 135 95 chr5 137864840 137865114 -14672145 - B4 SINE B4 -7 285 1 9 1636 351 179 0 0 chr5 137866464 137866531 -14670728 + CT-rich Low_complexity Low_complexity 1 67 0 9 1636 236 301 9 123 chr5 137866556 137866662 -14670597 - B1F SINE Alu -50 99 6 9 1636 439 292 29 75 chr5 137866574 137866748 -14670511 - B4A SINE B4 -126 166 1 9 1636 229 280 26 21 chr5 137867128 137867218 -14670041 - L2b LINE L2 -2 3385 3295 9 1636 728 172 0 8 chr5 137867705 137867822 -14669437 + PB1D9 SINE Alu 5 120 0 9 1636 406 325 24 99 chr5 137867858 137868105 -14669154 + ZP3AR Satellite Satellite 1 228 -1 9 1636 964 59 15 0 chr5 137868197 137868333 -14668926 + (CATA)n Simple_repeat Simple_repeat 2 139 0 9 1636 222 376 71 16 chr5 137868348 137868475 -14668784 - B4A SINE B4 -120 172 39 9 1636 1521 228 173 80 chr5 137868481 137868967 -14668292 + MT2A LTR ERVL 3 533 0 9 1636 333 0 0 0 chr5 137870637 137870674 -14666585 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 9 1636 248 301 36 12 chr5 137870869 137870953 -14666306 + ID_B1 SINE B4 93 178 -46 9 1636 531 342 0 7 chr5 137870980 137871130 -14666129 + RSINE1 SINE B4 13 161 -4 9 1636 435 38 0 0 chr5 137871133 137871186 -14666073 + (CA)n Simple_repeat Simple_repeat 2 54 0 9 1636 185 108 0 26 chr5 137871189 137871227 -14666032 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 9 1636 274 246 0 0 chr5 137871335 137871396 -14665863 - ZP3AR Satellite Satellite -107 105 45 9 1636 526 344 5 21 chr5 137871402 137871589 -14665670 + MER2 DNA MER2_type 161 344 -1 9 1636 712 223 100 24 chr5 137871683 137871853 -14665406 - B3A SINE B2 -15 183 1 9 1636 333 0 0 0 chr5 137871937 137871974 -14665285 + (TATG)n Simple_repeat Simple_repeat 4 40 0 9 1636 246 259 0 0 chr5 137872004 137872062 -14665197 + ID_B1 SINE B4 136 193 -31 9 1636 333 0 0 0 chr5 137872138 137872175 -14665084 + (TATG)n Simple_repeat Simple_repeat 4 40 0 9 1636 272 231 15 0 chr5 137872205 137872270 -14664989 + ID_B1 SINE B4 136 201 -23 9 1636 716 347 20 0 chr5 137872277 137872412 -14664847 + Lx8 LINE L1 7040 7175 -298 9 1636 252 0 0 0 chr5 137872412 137872440 -14664819 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1636 716 347 20 0 chr5 137872440 137872555 -14664704 + Lx8 LINE L1 7176 7294 -179 9 1636 207 200 20 0 chr5 137872555 137872605 -14664654 + (CAA)n Simple_repeat Simple_repeat 1 51 0 9 1636 864 161 88 0 chr5 137872608 137872745 -14664514 + B1_Mur4 SINE Alu 1 149 -1 9 1636 1152 119 0 0 chr5 137872770 137872947 -14664312 + (GAA)n Simple_repeat Simple_repeat 3 179 0 9 1636 402 244 140 7 chr5 137872947 137873083 -14664176 + Lx9 LINE L1 6300 6453 -1191 9 1636 1756 159 22 44 chr5 137873090 137873452 -14663807 + ORR1B1 LTR MaLR 41 394 0 9 1636 2154 236 58 38 chr5 137873452 137873655 -14663604 + Lx9 LINE L1 6449 6660 -984 9 1636 999 103 0 0 chr5 137873655 137873801 -14663458 + (GGGGA)n Simple_repeat Simple_repeat 2 147 0 9 1636 2154 236 58 38 chr5 137873801 137874179 -14663080 + Lx9 LINE L1 6661 7041 -603 9 1636 290 210 86 0 chr5 137874548 137874629 -14662630 + Lx9 LINE L1 7037 7124 -520 9 1636 500 231 9 18 chr5 137874646 137874756 -14662503 + Lx9 LINE L1 7101 7209 -435 9 1636 242 259 37 0 chr5 137874771 137874852 -14662407 + Lx9 LINE L1 7363 7446 -198 9 1636 345 82 0 0 chr5 137874919 137874968 -14662291 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1636 388 253 33 0 chr5 137874974 137875065 -14662194 + B1F2 SINE Alu 5 98 -51 9 1636 300 369 0 0 chr5 137875065 137875085 -14662174 + ID_B1 SINE B4 86 196 -28 9 1636 242 267 0 85 chr5 137875446 137875528 -14661731 + ID_B1 SINE B4 80 154 -70 9 1636 472 318 53 13 chr5 137875530 137875680 -14661579 + RSINE1 SINE B4 2 157 -8 9 1636 533 254 167 5 chr5 137875724 137875910 -14661349 + B3 SINE B2 1 216 0 9 1636 921 142 0 7 chr5 137875945 137876080 -14661179 + B1_Mus1 SINE Alu 3 136 -12 9 1636 229 183 33 0 chr5 137876378 137876438 -14660821 + GA-rich Low_complexity Low_complexity 2 63 0 9 1636 1115 107 11 0 chr5 137876444 137876621 -14660638 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 9 1636 653 279 7 0 chr5 137876643 137876783 -14660476 + B1F2 SINE Alu 1 141 -8 9 1636 188 143 0 23 chr5 137876796 137876839 -14660420 + GA-rich Low_complexity Low_complexity 2 43 0 9 1636 758 258 68 0 chr5 137877107 137877297 -14659962 - ID_B1 SINE B4 0 224 22 9 1636 231 36 0 0 chr5 137878185 137878213 -14659046 + (TGG)n Simple_repeat Simple_repeat 2 29 0 9 1636 679 182 25 0 chr5 137878213 137878334 -14658925 + B1_Mus2 SINE Alu 18 141 -6 9 1636 795 57 0 0 chr5 137878335 137878440 -14658819 + (GGGA)n Simple_repeat Simple_repeat 4 108 0 9 1636 601 285 7 14 chr5 137878514 137878660 -14658599 + RSINE1 SINE B4 2 146 -19 9 1636 242 324 0 27 chr5 137878685 137878698 -14658561 + B4 SINE B4 76 86 -206 9 1636 375 281 0 0 chr5 137878698 137878780 -14658479 + PB1D10 SINE Alu 2 83 -34 9 1636 317 331 126 31 chr5 137879167 137879326 -14657933 - HAL1-3A_ME LINE L1 -406 2452 2279 9 1636 642 209 0 0 chr5 137879383 137879493 -14657766 - PB1D10 SINE Alu -5 112 3 9 1636 767 194 7 0 chr5 137879934 137880073 -14657186 - ID_B1 SINE B4 -7 217 78 9 1636 1146 68 0 20 chr5 137880089 137880240 -14657019 - B1_Mus1 SINE Alu 0 148 1 9 1636 580 186 29 0 chr5 137880273 137880375 -14656884 - PB1D7 SINE Alu -15 105 1 9 1636 300 259 46 18 chr5 137880424 137880526 -14656733 + PB1D10 SINE Alu 3 111 -9 9 1636 286 255 49 11 chr5 137880531 137880654 -14656605 + L1MB3 LINE L1 5803 5929 -383 9 1636 285 75 0 0 chr5 137880806 137880846 -14656413 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 9 1636 227 139 139 0 chr5 137880846 137880889 -14656370 - ID_B1 SINE B4 -71 153 105 9 1636 307 243 75 81 chr5 137880928 137881089 -14656170 + L1MB3 LINE L1 5983 6142 -41 9 1636 1125 61 7 26 chr5 137881089 137881240 -14656019 + B1_Mus1 SINE Alu 1 148 0 9 1636 502 213 135 14 chr5 137881250 137881468 -14655791 - L1MB8 LINE L1 -237 5941 5696 9 1636 1290 245 74 52 chr5 137881583 137881975 -14655284 + RMER19B LTR ERVK 69 657 -245 9 1636 239 282 0 120 chr5 137882006 137882123 -14655136 + PB1D10 SINE Alu 14 116 -1 9 1636 801 261 29 20 chr5 137882145 137882391 -14654868 + B4A SINE B4 42 289 -3 9 1636 616 243 28 7 chr5 137882440 137882585 -14654674 + RSINE1 SINE B4 14 161 -4 9 1636 783 181 14 0 chr5 137882713 137882851 -14654408 + B1_Mur2 SINE Alu 2 141 -8 9 1636 319 243 130 46 chr5 137882969 137883077 -14654182 + PB1D7 SINE Alu 1 117 -3 9 1636 335 23 0 22 chr5 137883520 137883565 -14653694 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1636 315 0 0 0 chr5 137883621 137883656 -14653603 + (TTA)n Simple_repeat Simple_repeat 2 36 0 9 1636 568 305 38 62 chr5 137883669 137883721 -14653538 - B4 SINE B4 0 292 234 9 1636 325 262 90 102 chr5 137883721 137883887 -14653372 - RSINE1 SINE B4 0 165 2 9 1636 228 35 0 0 chr5 137883892 137883921 -14653338 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1636 619 291 0 20 chr5 137883925 137884076 -14653183 - RSINE1 SINE B4 -15 150 3 9 1636 568 305 38 62 chr5 137884076 137884222 -14653037 - B4 SINE B4 -63 229 88 9 1636 285 29 0 0 chr5 137884230 137884264 -14652995 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 9 1636 548 242 144 0 chr5 137884282 137884414 -14652845 - RSINE1 SINE B4 -13 152 2 9 1636 337 247 25 0 chr5 137884422 137884503 -14652756 - B4 SINE B4 -209 83 1 9 1636 579 226 80 0 chr5 137884546 137884683 -14652576 + B1F1 SINE Alu 1 148 -1 9 1636 955 209 71 19 chr5 137884685 137884895 -14652364 + ID_B1 SINE B4 1 221 -3 9 1636 980 127 14 0 chr5 137885479 137885621 -14651638 - B1_Mur3 SINE Alu -5 144 1 9 1636 824 240 10 53 chr5 137885658 137885865 -14651394 - B3A SINE B2 0 198 1 9 1636 443 75 46 18 chr5 137885881 137885990 -14651269 + (TA)n Simple_repeat Simple_repeat 1 112 0 9 1636 971 239 5 0 chr5 137885993 137886194 -14651065 - ID_B1 SINE B4 -21 203 2 9 1636 245 323 21 0 chr5 137886243 137886336 -14650923 + BC1_Mm scRNA scRNA 14 108 -44 9 1636 785 252 72 5 chr5 137886792 137886999 -14650260 - ID_B1 SINE B4 -2 222 2 9 1636 497 240 0 0 chr5 137887009 137887109 -14650150 - ID_B1 SINE B4 -4 220 121 1 1636 351 310 0 0 chr5 137887103 137887203 -14650056 - ID_B1 SINE B4 -41 183 84 1 1636 308 311 50 8 chr5 137887653 137887672 -14649587 + B1_Mus1 SINE Alu 22 146 -2 1 204 545 198 10 0 chr5 137887672 137887773 -14649486 + ID_B1 SINE B4 122 223 -1 1 1637 3339 46 5 2 chr5 137888171 137888566 -14648693 - MTA_Mm LTR MaLR 0 396 1 1 1637 810 278 67 9 chr5 137888752 137888977 -14648282 - MTD LTR MaLR -172 247 10 1 1637 421 250 112 15 chr5 137889165 137889299 -14647960 + MTD LTR MaLR 273 419 0 1 1637 6608 24 24 0 chr5 137889410 137890220 -14647039 + L1Md_F3 LINE L1 5755 6583 -1 1 1637 315 0 0 0 chr5 137890271 137890306 -14646953 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1637 470 169 139 33 chr5 137890319 137890441 -14646818 - B1_Mur4 SINE Alu 0 150 16 1 1637 1111 50 0 0 chr5 137890445 137890584 -14646675 + B1_Mus2 SINE Alu 3 141 -6 1 1637 451 288 23 120 chr5 137890885 137891102 -14646157 + B3A SINE B2 3 198 0 1 1637 469 277 1 70 chr5 137891109 137891264 -14645995 - ID_B1 SINE B4 -91 201 73 1 1637 962 283 140 0 chr5 137891349 137891649 -14645610 - MTE2b LTR MaLR -11 368 27 1 1637 227 366 26 18 chr5 137891832 137891946 -14645313 + RSINE1 SINE B4 8 122 -43 1 1637 1812 123 14 3 chr5 137892153 137892438 -14644821 + ORR1A3 LTR MaLR 39 326 0 1 1637 222 62 0 0 chr5 137892479 137892511 -14644748 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1 1637 469 231 19 0 chr5 137892721 137892829 -14644430 + PB1D10 SINE Alu 1 110 -7 1 1637 234 258 0 0 chr5 137892837 137892851 -14644408 + A-rich Low_complexity Low_complexity 1 14 0 1 1637 798 102 78 28 chr5 137892851 137892992 -14644267 + B1_Mus1 SINE Alu 1 148 0 1 1637 234 258 0 0 chr5 137892992 137893039 -14644220 + A-rich Low_complexity Low_complexity 15 61 0 1 1637 609 78 0 11 chr5 137893075 137893166 -14644093 + ZP3AR Satellite Satellite 6 95 -117 1 1637 430 155 14 0 chr5 137893166 137893237 -14644022 + ID4 SINE ID 1 72 -11 1 1637 798 127 0 0 chr5 137893252 137893378 -14643881 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 1 1637 568 200 0 0 chr5 137893791 137893901 -14643358 + PB1D10 SINE Alu 5 114 -3 1 1637 764 249 32 36 chr5 137894076 137894297 -14642962 + ID_B1 SINE B4 5 224 0 1 1637 234 0 0 0 chr5 137894297 137894323 -14642936 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1637 301 216 0 29 chr5 137894644 137894749 -14642510 + CT-rich Low_complexity Low_complexity 1 102 0 1 1637 316 237 13 0 chr5 137894756 137894832 -14642427 - BC1_Mm scRNA scRNA -75 77 1 1 1637 381 284 99 7 chr5 137894783 137894925 -14642334 - ZP3AR Satellite Satellite -14 198 44 1 1637 258 32 0 0 chr5 137894927 137894958 -14642301 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 1637 265 275 25 0 chr5 137895768 137895848 -14641411 - ID4 SINE ID 0 83 2 1 1637 1522 53 28 4 chr5 137895849 137896331 -14640928 - ZP3AR Satellite Satellite -11 493 1 1 1637 817 101 7 7 chr5 137896872 137897021 -14640238 + (TC)n Simple_repeat Simple_repeat 2 150 0 1 1637 297 118 0 0 chr5 137897021 137897071 -14640188 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1637 389 144 11 0 chr5 137897967 137898057 -14639202 + (TTGG)n Simple_repeat Simple_repeat 1 91 0 1 1637 647 284 33 9 chr5 137898058 137898268 -14638991 - ID_B1 SINE B4 -9 215 1 1 1637 406 220 77 0 chr5 137898275 137898366 -14638893 - PB1D10 SINE Alu -9 108 11 1 1637 325 255 62 21 chr5 137898286 137898382 -14638877 - ID_B1 SINE B4 -48 176 77 1 1637 565 242 150 5 chr5 137898581 137898768 -14638491 - ID_B1 SINE B4 -5 219 6 1 1637 720 89 0 0 chr5 137899388 137899489 -14637770 + (TCC)n Simple_repeat Simple_repeat 2 102 0 1 1637 1352 46 40 0 chr5 137899489 137899662 -14637597 - B2_Mm2 SINE B2 -15 180 1 1 1637 588 226 32 8 chr5 137899997 137900122 -14637137 - RSINE1 SINE B4 -34 131 4 1 1637 383 187 159 76 chr5 137900125 137900270 -14636989 - RSINE1 SINE B4 -6 159 3 1 1637 264 210 191 36 chr5 137900283 137900367 -14636892 - PB1D7 SINE Alu 0 120 24 1 1637 642 206 66 7 chr5 137900425 137900562 -14636697 - B1F2 SINE Alu 0 149 5 1 1637 975 261 22 142 chr5 137900666 137901081 -14636178 + MTE2a LTR MaLR 13 377 -2 1 1637 342 278 129 9 chr5 137901098 137901214 -14636045 - ID_B1 SINE B4 0 224 95 1 1637 315 257 30 82 chr5 137901246 137901358 -14635901 + PB1D7 SINE Alu 6 116 -4 1 1637 384 253 20 0 chr5 137901409 137901559 -14635700 + GA-rich Low_complexity Low_complexity 1 153 0 1 1637 596 286 138 0 chr5 137901562 137901751 -14635508 + ID_B1 SINE B4 10 224 0 1 1637 1535 32 0 16 chr5 137901751 137901942 -14635317 + B2_Mm1a SINE B2 2 189 -4 1 1637 223 129 0 0 chr5 137901979 137902010 -14635249 + (TCC)n Simple_repeat Simple_repeat 2 32 0 1 1637 636 155 0 0 chr5 137902012 137902154 -14635105 + CT-rich Low_complexity Low_complexity 2 143 0 1 1637 730 207 7 0 chr5 137902171 137902311 -14634948 - B1_Mus1 SINE Alu -7 141 1 1 1637 218 336 92 8 chr5 137902311 137902431 -14634828 - MIRb SINE MIR -109 159 30 1 1637 1510 61 0 6 chr5 137902444 137902794 -14634465 + ZP3AR Satellite Satellite 1 348 0 1 1637 297 291 0 0 chr5 137902795 137902874 -14634385 + ID4 SINE ID 2 80 -3 1 1637 192 182 0 0 chr5 137903361 137903405 -14633854 + GA-rich Low_complexity Low_complexity 3 46 0 1 1637 225 211 11 146 chr5 137903432 137903521 -14633738 + PB1D10 SINE Alu 40 116 -1 1 1637 331 310 11 0 chr5 137903629 137903716 -14633543 + PB1D10 SINE Alu 10 97 -20 1 1637 422 250 108 8 chr5 137903846 137903975 -14633284 - Lx5 LINE L1 -437 6613 6472 1 1637 1329 281 54 18 chr5 137903968 137903999 -14633260 + Lx6 LINE L1 6987 7018 -442 1 1637 300 53 0 0 chr5 137903999 137904037 -14633222 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 1 1637 1329 281 54 18 chr5 137904037 137904447 -14632812 + Lx6 LINE L1 7019 7443 -17 1 1637 187 289 0 0 chr5 137906701 137906753 -14630506 - L2c LINE L2 -38 3349 3298 1 1637 264 350 29 10 chr5 137906816 137906920 -14630339 + PB1D10 SINE Alu 1 106 -11 1 1637 550 268 0 0 chr5 137906939 137907062 -14630197 + ZP3AR Satellite Satellite 47 169 -43 1 1637 575 298 125 60 chr5 137907379 137907557 -14629702 + ORR1E LTR MaLR 3 205 -154 1 1637 2088 80 0 138 chr5 137907557 137907934 -14629325 + ORR1A4 LTR MaLR 5 329 0 1 1637 575 298 125 60 chr5 137907934 137908090 -14629169 + ORR1E LTR MaLR 206 358 -1 1 1637 1283 87 43 0 chr5 137908597 137908782 -14628477 - B2_Mm2 SINE B2 0 195 3 1 1637 908 105 41 27 chr5 137908817 137908964 -14628295 - B1_Mur3 SINE Alu 0 149 1 1 1637 211 260 60 0 chr5 137908982 137909032 -14628227 - PB1D7 SINE Alu -25 95 43 1 1637 414 0 0 0 chr5 137909271 137909317 -14627942 + (CA)n Simple_repeat Simple_repeat 2 47 0 1 1637 236 274 0 0 chr5 137909317 137909368 -14627891 - ZP3AR Satellite Satellite -110 102 52 1 1637 1464 222 15 56 chr5 137909981 137910373 -14626886 + MTE2a LTR MaLR 4 379 0 1 1637 837 127 38 0 chr5 137910708 137910866 -14626393 + CT-rich Low_complexity Low_complexity 3 166 0 1 1637 639 283 184 18 chr5 137910942 137911165 -14626094 - B4 SINE B4 -29 263 4 1 1637 450 298 15 8 chr5 137911189 137911321 -14625938 - ID_B1 SINE B4 -8 216 84 1 1637 469 227 14 17 chr5 137912587 137912725 -14624534 - PB1D10 SINE Alu -9 138 6 1 1637 338 214 0 0 chr5 137912772 137912842 -14624417 - ID4_ SINE ID -12 71 2 1 1637 463 203 110 22 chr5 137912852 137912988 -14624271 - B1F1 SINE Alu -1 148 1 1 1637 281 26 26 0 chr5 137913060 137913098 -14624161 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1 1637 879 321 0 8 chr5 137913507 137913802 -14623457 + ZP3AR Satellite Satellite 1 292 -1 1 1637 271 355 26 0 chr5 137913767 137913843 -14623416 + ID4 SINE ID 5 82 -1 1 1637 522 246 0 8 chr5 137914224 137914347 -14622912 - ID_B1 SINE B4 0 224 103 1 1637 297 0 0 0 chr5 137914632 137914665 -14622594 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1637 387 0 0 0 chr5 137914665 137914707 -14622552 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1637 401 250 16 48 chr5 137914976 137915102 -14622157 - RSINE1 SINE B4 -42 123 2 1 1637 195 129 0 0 chr5 137916031 137916062 -14621197 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1637 870 230 121 45 chr5 137916066 137916330 -14620929 - B4A SINE B4 -8 284 1 1 1637 422 235 10 0 chr5 137916333 137916346 -14620913 - ID_B1 SINE B4 -40 184 86 1 1637 475 165 0 0 chr5 137916346 137916431 -14620828 - PB1D10 SINE Alu -28 89 5 1 1637 314 250 35 80 chr5 137916441 137916554 -14620705 - PB1D10 SINE Alu 0 117 10 1 1637 251 292 83 58 chr5 137916897 137917053 -14620206 + YREP_Mm Unknown Unknown 135 294 -1518 1 1637 755 201 0 34 chr5 137916927 137917076 -14620183 - ID_B1 SINE B4 0 224 81 1 1637 287 289 111 26 chr5 137917075 137917192 -14620067 - PB1 SINE Alu 0 127 1 1 1637 423 263 58 25 chr5 137917967 137918088 -14619171 - ID_B1 SINE B4 -12 212 88 1 1637 510 319 76 18 chr5 137918102 137918377 -14618882 + HAL1 LINE L1 1303 1593 -914 1 1637 1125 42 28 0 chr5 137918509 137918652 -14618607 + B1_Mus2 SINE Alu 1 147 0 1 1637 441 0 0 0 chr5 137918652 137918701 -14618558 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 1 1637 623 194 4 0 chr5 137918701 137918976 -14618283 + (TG)n Simple_repeat Simple_repeat 1 276 0 1 1637 358 275 153 14 chr5 137918989 137919133 -14618126 - RSINE1 SINE B4 0 165 2 1 1637 415 216 82 0 chr5 137919179 137919276 -14617983 - ID_B1 SINE B4 -117 107 3 1 1637 428 231 92 9 chr5 137919281 137919390 -14617869 - B1F SINE Alu 0 149 32 1 1637 387 253 105 0 chr5 137919387 137919482 -14617777 + PB1 SINE Alu 23 127 0 1 1637 721 266 16 5 chr5 137919608 137919793 -14617466 - B3A SINE B2 -11 187 1 1 1637 633 274 16 41 chr5 137919958 137920152 -14617107 - B4 SINE B4 -86 206 18 1 1637 1209 27 0 0 chr5 137920245 137920392 -14616867 + B1_Mm SINE Alu 1 147 0 1 1637 321 264 74 19 chr5 137920395 137920449 -14616810 + L1M4b LINE L1 1762 1814 -5520 1 1637 282 116 0 0 chr5 137920449 137920492 -14616767 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1 1637 321 264 74 19 chr5 137920492 137920545 -14616714 + L1M4b LINE L1 1815 1875 -5459 1 1637 408 179 0 0 chr5 137920570 137920648 -14616611 + (TA)n Simple_repeat Simple_repeat 2 79 0 1 1637 877 241 123 44 chr5 137920650 137920732 -14616527 - MT2A LTR ERVL -40 493 405 1 1637 2027 103 73 17 chr5 137920732 137921087 -14616172 + RLTR30 LTR ERV1 3 377 -2 1 1637 877 241 123 44 chr5 137921087 137921321 -14615938 - MT2A LTR ERVL -129 404 152 1 1637 1055 74 7 13 chr5 137921338 137921489 -14615770 + B1_Mur4 SINE Alu 1 150 0 1 1637 877 226 41 5 chr5 137921538 137921734 -14615525 + MTEa LTR MaLR 167 369 -10 1 1637 867 175 0 0 chr5 137921823 137921966 -14615293 + B1_Mur3 SINE Alu 1 143 -6 1 1637 561 239 9 0 chr5 137921986 137922099 -14615160 + B3A SINE B2 20 133 -65 1 1637 432 0 0 0 chr5 137922099 137922147 -14615112 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1637 189 0 0 0 chr5 137922147 137922167 -14615092 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1637 263 241 178 46 chr5 137922167 137922204 -14615055 + B2_Mm1a SINE B2 154 190 -3 1 1637 436 206 118 0 chr5 137922215 137922317 -14614942 + PB1D10 SINE Alu 1 114 -3 1 1637 261 0 0 0 chr5 137922465 137922494 -14614765 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1637 435 19 0 0 chr5 137922656 137922708 -14614551 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1637 1002 226 32 18 chr5 137923828 137924049 -14613210 + ID_B1 SINE B4 1 224 0 1 1637 677 238 75 79 chr5 137924542 137924585 -14612674 - B4A SINE B4 -11 281 226 1 1637 645 256 89 0 chr5 137924585 137924765 -14612494 - B3A SINE B2 -1 197 2 1 1637 677 238 75 79 chr5 137924765 137924999 -14612260 - B4A SINE B4 -67 225 5 1 1637 297 0 0 0 chr5 137925496 137925529 -14611730 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1 1637 1006 232 5 0 chr5 137925899 137926119 -14611140 - ID_B1 SINE B4 -2 222 2 1 1637 677 150 67 8 chr5 137927851 137927985 -14609274 - ZP3AR Satellite Satellite -28 184 43 1 1637 241 229 349 0 chr5 137928461 137928544 -14608715 + PB1D10 SINE Alu 6 117 0 1 1637 1113 203 0 36 chr5 137928547 137928767 -14608492 + B3 SINE B2 2 213 -3 1 1637 220 175 140 0 chr5 137928843 137928900 -14608359 - L2a LINE L2 -85 3341 3277 1 1637 685 260 51 15 chr5 137928928 137929123 -14608136 + B3 SINE B2 9 210 -6 1 1637 192 102 20 39 chr5 137929155 137929206 -14608053 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 1 1637 418 266 11 0 chr5 137929220 137929314 -14607945 + B4A SINE B4 1 95 -197 1 1637 883 136 20 0 chr5 137929315 137929462 -14607797 + B1_Mur4 SINE Alu 1 150 0 1 1637 561 278 20 8 chr5 137929462 137929636 -14607623 + B4A SINE B4 69 241 -51 1 1637 306 340 10 0 chr5 137929671 137929768 -14607491 + RSINE1 SINE B4 68 165 0 1 1637 1215 142 6 0 chr5 137929873 137930207 -14607052 + (CA)n Simple_repeat Simple_repeat 1 336 0 1 1637 337 131 16 16 chr5 137930211 137930273 -14606986 + HAL1-3A_ME LINE L1 1968 2029 -829 1 1637 929 72 57 21 chr5 137930414 137930545 -14606714 + B1_Mus1 SINE Alu 1 139 -9 1 1637 351 0 0 0 chr5 137930545 137930584 -14606675 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1637 387 228 20 10 chr5 137931255 137931364 -14605895 + B1F1 SINE Alu 29 139 -10 1 1637 180 0 0 0 chr5 137931364 137931384 -14605875 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1637 485 229 85 0 chr5 137931411 137931529 -14605730 + ID_B1 SINE B4 96 223 -1 1 1637 621 258 109 15 chr5 137931740 137931941 -14605318 - ID_B1 SINE B4 0 224 5 1 1637 186 189 0 0 chr5 137932038 137932075 -14605184 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1637 466 248 176 0 chr5 137932101 137932226 -14605033 - RSINE1 SINE B4 -16 149 3 1 1637 534 196 44 9 chr5 137933168 137933281 -14603978 + PB1D10 SINE Alu 1 117 0 1 1637 815 161 0 14 chr5 137933288 137933427 -14603832 + B1_Mur4 SINE Alu 1 137 -13 1 1637 195 42 0 0 chr5 137933430 137933454 -14603805 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1637 385 378 5 30 chr5 137933455 137933506 -14603753 + B4A SINE B4 4 55 -237 1 1637 561 15 0 0 chr5 137933506 137933572 -14603687 + (ATTTG)n Simple_repeat Simple_repeat 2 67 0 1 1637 1134 36 0 0 chr5 137933572 137933709 -14603550 - B1_Mus2 SINE Alu -9 138 2 1 1637 385 378 5 30 chr5 137933709 137933855 -14603404 + B4A SINE B4 56 196 -96 1 1637 235 92 0 135 chr5 137933858 137933984 -14603275 + (CCCCAG)n Simple_repeat Simple_repeat 6 114 0 1 1637 425 238 19 38 chr5 137933991 137934096 -14603163 + B4 SINE B4 187 289 -3 1 1637 512 275 41 27 chr5 137934127 137934138 -14603121 + B1F SINE Alu 1 57 -92 1 1637 687 207 0 0 chr5 137934138 137934259 -14603000 + ID_B1 SINE B4 91 211 -13 1 1637 512 275 41 27 chr5 137934259 137934273 -14602986 + B1F SINE Alu 58 148 -1 1 1637 754 204 0 108 chr5 137934408 137934584 -14602675 + RSINE1 SINE B4 8 164 -1 1 1637 492 256 73 29 chr5 137934664 137934801 -14602458 - B1F SINE Alu -6 143 1 1 1637 305 296 42 34 chr5 137935449 137935568 -14601691 + PB1D9 SINE Alu 1 120 0 1 1637 457 278 28 114 chr5 137935572 137935609 -14601650 + B3A SINE B2 6 42 -156 1 1637 1112 44 0 0 chr5 137935609 137935744 -14601515 + B1_Mur3 SINE Alu 1 135 -14 1 1637 186 43 0 0 chr5 137935748 137935771 -14601488 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1 1637 457 278 28 114 chr5 137935771 137935939 -14601320 + B3A SINE B2 43 196 -2 1 1637 524 278 15 0 chr5 137935960 137936093 -14601166 + B1F SINE Alu 1 135 -14 1 1637 751 109 23 0 chr5 137936093 137936221 -14601038 + (GAAA)n Simple_repeat Simple_repeat 4 134 0 1 1637 465 314 84 14 chr5 137936222 137936314 -14600945 + B4 SINE B4 5 110 -182 1 1637 360 0 0 0 chr5 137936314 137936354 -14600905 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1637 465 314 84 14 chr5 137936354 137936474 -14600785 + B4 SINE B4 111 231 -61 1 1637 291 281 87 73 chr5 137936456 137936489 -14600770 + B4 SINE B4 74 224 -67 1 1637 472 170 52 35 chr5 137936489 137936605 -14600654 + B1_Mur1 SINE Alu 31 148 -1 1 1637 318 294 137 0 chr5 137936611 137936764 -14600495 + HAL1-3A_ME LINE L1 2284 2457 -401 1 1637 272 294 0 45 chr5 137936847 137936936 -14600323 + RSINE1 SINE B4 2 86 -79 1 1637 1169 117 0 26 chr5 137936858 137937051 -14600208 + B2_Mm2 SINE B2 8 195 0 1 1637 215 381 0 0 chr5 137937174 137937258 -14600001 + L2c LINE L2 3052 3135 -252 1 1637 1183 42 0 0 chr5 137937367 137937511 -14599748 + B1_Mus2 SINE Alu 1 144 -3 1 1637 549 44 0 0 chr5 137937512 137937580 -14599679 + (GAAAA)n Simple_repeat Simple_repeat 3 70 0 1 1637 301 260 19 68 chr5 137937885 137937988 -14599271 + PB1D10 SINE Alu 14 111 -6 1 1637 402 324 0 46 chr5 137938021 137938173 -14599086 + B1F1 SINE Alu 4 148 -1 1 1637 658 325 30 15 chr5 137938175 137938444 -14598815 + B4A SINE B4 3 275 -17 1 1637 678 239 7 0 chr5 137938666 137938808 -14598451 - B1_Mur1 SINE Alu -4 145 3 1 1637 416 280 117 62 chr5 137938835 137939014 -14598245 - B3A SINE B2 -6 192 4 1 1637 581 263 13 75 chr5 137939159 137939275 -14597984 - ID_B1 SINE B4 -11 213 111 1 1637 1528 36 0 10 chr5 137939275 137939469 -14597790 - B2_Mm1a SINE B2 0 193 2 1 1637 581 263 13 75 chr5 137939469 137939578 -14597681 - ID_B1 SINE B4 -114 110 2 1 1637 594 256 75 25 chr5 137939793 137939993 -14597266 + B4A SINE B4 83 292 0 1 1637 394 290 42 0 chr5 137940016 137940172 -14597087 - L1MA4 LINE L1 -358 5933 5772 1 1637 423 0 0 0 chr5 137940211 137940258 -14597001 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1637 229 263 200 10 chr5 137940287 137940387 -14596872 - RSINE1 SINE B4 -46 119 1 1 1637 1084 256 101 26 chr5 137940388 137940773 -14596486 - L1MA4 LINE L1 -515 5782 5369 1 1637 217 226 19 0 chr5 137940778 137940831 -14596428 + CT-rich Low_complexity Low_complexity 3 56 0 1 1637 256 217 0 77 chr5 137940864 137940929 -14596330 + RLTR25A LTR ERVK 514 573 -530 1 1637 622 140 0 10 chr5 137940874 137940975 -14596284 + B1_Mur4 SINE Alu 49 148 -2 1 1637 744 213 101 5 chr5 137940975 137941164 -14596095 - B3 SINE B2 -9 207 1 1 1637 301 260 46 3 chr5 137941178 137941319 -14595940 - L1MA4 LINE L1 -803 5337 5127 1 1637 299 234 174 41 chr5 137941322 137941420 -14595839 - PB1D10 SINE Alu -4 113 3 1 1637 405 252 122 0 chr5 137941486 137941593 -14595666 - RSINE1 SINE B4 -44 121 2 1 1637 530 252 141 32 chr5 137941598 137941754 -14595505 - MTEa LTR MaLR -201 178 6 1 1637 290 250 66 0 chr5 137941854 137941930 -14595329 + ZP3AR Satellite Satellite 42 122 -90 1 1637 311 391 88 47 chr5 137941990 137942264 -14594995 - B4 SINE B4 -6 286 2 1 1637 352 169 83 14 chr5 137944440 137944512 -14592747 - ID_B1 SINE B4 -47 177 101 1 1637 416 268 31 0 chr5 137944692 137944789 -14592470 - PB1D10 SINE Alu -12 105 6 1 1637 434 267 124 90 chr5 137944868 137945045 -14592214 + B3A SINE B2 14 196 -2 1 1637 269 267 104 9 chr5 137945202 137945308 -14591951 + L1M4 LINE L1 4733 4848 -1298 1 1637 372 267 99 0 chr5 137945314 137945445 -14591814 - ID_B1 SINE B4 -9 215 72 1 1637 281 361 0 10 chr5 137945753 137945851 -14591408 + RSINE1 SINE B4 25 121 -44 1 1637 29 0 0 0 chr5 137945888 137945917 -14591342 + AT_rich Low_complexity Low_complexity 1 29 0 1 1637 548 227 114 0 chr5 137945928 137946060 -14591199 + B1F SINE Alu 1 147 -2 1 1637 465 235 105 8 chr5 137946096 137946229 -14591030 + ID_B1 SINE B4 76 221 -3 1 1637 440 302 25 25 chr5 137946229 137946392 -14590867 + RSINE1 SINE B4 3 165 0 1 1637 189 107 0 0 chr5 137946417 137946445 -14590814 + (TAA)n Simple_repeat Simple_repeat 3 30 0 1 1637 331 256 22 55 chr5 137946450 137946566 -14590693 + L1M4 LINE L1 5182 5295 -851 1 1637 758 126 59 0 chr5 137946701 137946836 -14590423 + B1_Mur4 SINE Alu 7 149 -1 1 1637 918 73 0 0 chr5 137946852 137946975 -14590284 + (GGGA)n Simple_repeat Simple_repeat 4 126 0 1 1637 351 233 115 8 chr5 137946986 137947116 -14590143 + L1M4 LINE L1 5297 5440 -919 1 1637 753 226 39 22 chr5 137947121 137947302 -14589957 + ID_B1 SINE B4 1 184 -40 1 1637 278 304 10 89 chr5 137947216 137947317 -14589942 + PB1D10 SINE Alu 20 112 -5 1 1637 273 29 0 0 chr5 137947317 137947351 -14589908 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1 1637 231 114 0 0 chr5 137947643 137947678 -14589581 + (TA)n Simple_repeat Simple_repeat 2 36 0 1 1637 540 244 251 10 chr5 137947678 137947885 -14589374 + RMER15 LTR ERVL 306 562 -13 1 1637 386 265 87 19 chr5 137947971 137948075 -14589184 + PB1D10 SINE Alu 7 117 0 1 1637 283 342 24 24 chr5 137948209 137948332 -14588927 + L1M4 LINE L1 5695 5817 -542 1 1637 390 287 84 71 chr5 137948379 137948533 -14588726 + B4 SINE B4 1 156 -136 1 1637 352 301 9 9 chr5 137948660 137948774 -14588485 + PB1D7 SINE Alu 7 120 0 1 1637 209 83 28 0 chr5 137948779 137948815 -14588444 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1 1637 306 282 24 57 chr5 137948956 137949080 -14588179 + PB1D7 SINE Alu 1 120 0 1 1637 310 299 13 0 chr5 137949103 137949180 -14588079 + ID4_ SINE ID 5 82 -1 1 1637 279 0 0 0 chr5 137949248 137949279 -14587980 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1 1637 267 226 47 31 chr5 137949293 137949357 -14587902 + RSINE1 SINE B4 100 164 -1 1 1637 369 236 69 0 chr5 137949550 137949622 -14587637 - ID4_ SINE ID -6 77 1 1 1637 207 0 0 0 chr5 137949675 137949698 -14587561 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1 1637 1013 109 0 0 chr5 137949698 137949836 -14587423 - B1_Mus2 SINE Alu -9 138 1 1 1637 423 147 0 0 chr5 137949836 137949911 -14587348 - URR1B DNA MER1_type -83 142 68 1 1637 652 119 242 17 chr5 137949982 137950102 -14587157 + B1_Mus1 SINE Alu 2 148 0 1 1637 464 303 36 33 chr5 137950116 137950293 -14586966 + B3A SINE B2 38 209 -7 1 1637 376 183 54 43 chr5 137950685 137950797 -14586462 + B1_Mur1 SINE Alu 16 128 -21 1 1637 320 222 0 40 chr5 137950920 137950995 -14586264 - ID_B1 SINE B4 -41 183 112 1 1637 234 179 34 51 chr5 137951135 137951194 -14586065 - PB1D10 SINE Alu -20 97 40 1 1637 271 252 9 18 chr5 137951444 137951624 -14585635 + (CGG)n Simple_repeat Simple_repeat 1 178 0 1 1637 187 177 0 31 chr5 137951732 137951796 -14585463 + (CCG)n Simple_repeat Simple_repeat 3 64 0 1 1637 279 54 0 0 chr5 137951984 137952021 -14585238 + (TC)n Simple_repeat Simple_repeat 1 37 0 1 1637 279 0 0 0 chr5 137952592 137952623 -14584636 + (TCTG)n Simple_repeat Simple_repeat 1 31 0 1 1637 308 297 101 8 chr5 137953356 137953475 -14583784 + RSINE1 SINE B4 8 137 -28 1 1637 488 340 27 0 chr5 137954989 137955139 -14582120 - RSINE1 SINE B4 -7 158 5 1 1637 333 274 71 0 chr5 137955396 137955444 -14581815 - ID_B1 SINE B4 -88 136 16 1 1637 363 172 0 15 chr5 137955444 137955509 -14581750 - ID4_ SINE ID -4 79 16 1 1637 476 321 40 29 chr5 137955524 137955697 -14581562 - MER20 DNA MER1_type -44 175 1 1 1637 524 284 63 14 chr5 137956003 137956146 -14581113 - RSINE1 SINE B4 -13 152 3 1 1637 491 271 189 20 chr5 137956510 137956759 -14580500 - B4 SINE B4 -1 291 1 1 1637 543 265 60 0 chr5 137956759 137956898 -14580361 - B4A SINE B4 -143 149 2 1 1637 225 298 8 83 chr5 137956898 137957011 -14580248 - BC1_Mm scRNA scRNA -29 123 21 1 1637 243 281 16 0 chr5 137956956 137957020 -14580239 - tRNA-Ala-GCY_ tRNA tRNA -6 69 5 1 1637 438 302 55 45 chr5 137957061 137957262 -14579997 + B3A SINE B2 14 216 0 1 1637 334 199 1 4 chr5 137957274 137957352 -14579907 + PB1D10 SINE Alu 1 78 -49 1 1637 941 155 192 6 chr5 137957371 137957553 -14579706 - B3 SINE B2 0 216 1 1 1637 236 319 50 50 chr5 137957755 137957801 -14579458 - RSINE1 SINE B4 -45 120 2 1 1637 438 164 0 0 chr5 137957801 137957874 -14579385 - B3A SINE B2 -125 73 1 1 1637 1065 58 0 55 chr5 137958076 137958221 -14579038 - B1_Mus2 SINE Alu -10 137 1 1 1637 295 263 13 13 chr5 137958265 137958342 -14578917 - ID2 SINE ID -6 77 1 1 1637 881 265 13 48 chr5 137959166 137959396 -14577863 - ID_B1 SINE B4 -1 223 2 1 1637 351 263 10 39 chr5 137959398 137959501 -14577758 - PB1D10 SINE Alu -3 114 15 1 1637 235 289 68 126 chr5 137959439 137959542 -14577717 - B4A SINE B4 -138 154 58 1 1637 252 0 0 0 chr5 137962165 137962193 -14575066 + (GGA)n Simple_repeat Simple_repeat 1 28 0 1 1637 464 300 7 21 chr5 137962362 137962505 -14574754 + RSINE1 SINE B4 1 141 -24 1 1637 383 290 156 59 chr5 137962771 137963027 -14574232 - B4 SINE B4 -10 282 2 1 1637 241 312 0 0 chr5 137965223 137965319 -14571940 + (CAG)n Simple_repeat Simple_repeat 2 97 0 1 1637 363 44 0 0 chr5 137966542 137966587 -14570672 + (CAG)n Simple_repeat Simple_repeat 1 45 0 1 1637 212 154 0 0 chr5 137967260 137967299 -14569960 + T-rich Low_complexity Low_complexity 2 40 0 1 1637 201 132 0 0 chr5 137967302 137967340 -14569919 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1637 282 56 0 0 chr5 137968475 137968511 -14568748 + (T)n Simple_repeat Simple_repeat 1 36 0 1 1637 26 0 0 0 chr5 137969390 137969416 -14567843 + AT_rich Low_complexity Low_complexity 1 26 0 1 1637 699 273 134 0 chr5 137975130 137975324 -14561935 - ID_B1 SINE B4 -2 222 3 1 1637 1168 58 0 0 chr5 137975644 137975783 -14561476 + B1_Mm SINE Alu 1 139 -8 1 1637 318 26 0 0 chr5 137975783 137975822 -14561437 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1637 360 315 0 0 chr5 137975857 137975949 -14561310 + ID_B1 SINE B4 126 217 -7 1 1637 717 275 36 72 chr5 137975964 137976195 -14561064 + B4A SINE B4 2 224 -68 1 1637 908 230 45 10 chr5 137976195 137976393 -14560866 + B3 SINE B2 4 208 -8 1 1637 717 275 36 72 chr5 137976393 137976412 -14560847 + B4A SINE B4 225 243 -49 1 1637 1390 243 30 33 chr5 137976990 137977326 -14559933 - MTEa LTR MaLR -43 336 2 1 1637 344 319 193 21 chr5 137977450 137977735 -14559524 - L2 LINE L2 -1036 2383 2050 1 1637 256 333 12 88 chr5 137977832 137978003 -14559256 + RMER15 LTR ERVL 4 161 -414 1 1637 861 129 45 0 chr5 137978076 137978208 -14559051 - B1_Mur3 SINE Alu -10 139 2 1 1637 330 87 0 0 chr5 137978340 137978386 -14558873 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1637 656 287 96 26 chr5 137978406 137978579 -14558680 - B4A SINE B4 -20 272 83 1 1637 333 0 0 0 chr5 137978579 137978616 -14558643 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1637 656 287 96 26 chr5 137978616 137978671 -14558588 - B4A SINE B4 -210 82 28 1 1637 361 250 44 66 chr5 137978690 137978827 -14558432 - B1F1 SINE Alu -15 134 1 1 1637 626 282 6 6 chr5 137978827 137978870 -14558389 - B4 SINE B4 -207 85 43 1 1637 225 0 0 0 chr5 137978948 137978973 -14558286 + (TG)n Simple_repeat Simple_repeat 1 25 0 1 1637 491 232 0 66 chr5 137978983 137979089 -14558170 - B1F1 SINE Alu -47 102 4 1 1637 667 268 59 0 chr5 137979345 137979498 -14557761 + RSINE1 SINE B4 2 163 -2 1 1637 437 218 8 0 chr5 137979499 137979623 -14557636 + (CA)n Simple_repeat Simple_repeat 2 126 0 1 1637 680 271 6 6 chr5 137979747 137979907 -14557352 - RSINE1 SINE B4 -1 164 5 1 1637 186 43 0 0 chr5 137980109 137980132 -14557127 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1637 614 130 58 23 chr5 137980193 137980366 -14556893 + (CAGA)n Simple_repeat Simple_repeat 2 180 0 1 1637 611 270 22 72 chr5 137980388 137980616 -14556643 - B4A SINE B4 0 292 87 1 1637 432 260 0 19 chr5 137980640 137980746 -14556513 - B4A SINE B4 -188 104 1 1 1637 495 282 6 57 chr5 137980873 137981031 -14556228 + MER63A DNA AcHobo 4 153 -57 1 1637 265 234 31 15 chr5 137981075 137981140 -14556119 + B4A SINE B4 1 66 -226 1 1637 562 277 7 0 chr5 137981223 137981364 -14555895 + B4A SINE B4 104 245 -47 1 1637 378 0 0 0 chr5 137981402 137981444 -14555815 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1637 277 305 105 0 chr5 137981470 137981565 -14555694 - PB1D10 SINE Alu -10 107 3 1 1637 649 285 6 0 chr5 137981565 137981645 -14555614 - ID SINE ID -141 83 3 1 1637 234 0 0 0 chr5 137981663 137981689 -14555570 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1637 570 289 36 21 chr5 137981748 137981942 -14555317 + B3A SINE B2 2 198 0 1 1637 1354 106 0 0 chr5 137981962 137982142 -14555117 + B2_Mm2 SINE B2 2 181 -14 1 1637 390 42 0 0 chr5 137982192 137982240 -14555019 + (GGAAA)n Simple_repeat Simple_repeat 4 51 0 1 1637 210 333 47 12 chr5 137982512 137982597 -14554662 + PB1D10 SINE Alu 1 88 -29 1 1637 720 0 0 0 chr5 137982602 137982682 -14554577 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 1 1637 329 247 78 0 chr5 137983187 137983264 -14553995 + ID2 SINE ID 1 83 0 1 1637 815 183 0 6 chr5 137983837 137984002 -14553257 + RMER19B LTR ERVK 2 149 -753 1 1637 1944 182 35 0 chr5 137984003 137984371 -14552888 + RMER19B LTR ERVK 56 436 -466 1 1637 368 314 27 67 chr5 137984716 137984793 -14552466 + RSINE1 SINE B4 4 74 -91 1 1637 1329 80 0 46 chr5 137984793 137984989 -14552270 + B2_Mm2 SINE B2 2 188 -7 1 1637 368 314 27 67 chr5 137984989 137985061 -14552198 + RSINE1 SINE B4 75 146 -19 1 1637 1021 208 59 0 chr5 137985172 137985374 -14551885 + B3 SINE B2 3 216 0 1 1637 917 47 135 30 chr5 137985403 137985536 -14551723 + B1_Mus1 SINE Alu 1 147 -1 1 1637 635 203 0 13 chr5 137985543 137985693 -14551566 + GA-rich Low_complexity Low_complexity 3 150 0 1 1637 186 302 34 23 chr5 137985712 137985800 -14551459 + MIR SINE MIR 51 139 -123 1 1637 1157 158 59 0 chr5 137985802 137986004 -14551255 - B3 SINE B2 0 216 3 1 1637 329 336 26 9 chr5 137986011 137986125 -14551134 - PB1D10 SINE Alu -1 116 1 1 1637 359 326 45 87 chr5 137986289 137986578 -14550681 + B4 SINE B4 2 278 -14 1 1637 266 286 12 12 chr5 137986592 137986677 -14550582 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 1637 312 281 17 27 chr5 137986735 137986842 -14550417 + PB1D10 SINE Alu 6 115 -34 1 1637 5945 88 38 19 chr5 137986842 137987782 -14549477 + L1VL2 LINE L1 139 1100 -2515 1 1637 1231 83 155 0 chr5 137987782 137987950 -14549309 + B2_Mm2 SINE B2 1 194 -1 1 1637 4750 99 47 91 chr5 137987950 137988751 -14548508 + L1VL2 LINE L1 1101 1845 -1770 1 1637 364 270 0 0 chr5 137988874 137988963 -14548296 - PB1D10 SINE Alu -2 115 27 1 1637 225 154 0 0 chr5 137989312 137989351 -14547908 + T-rich Low_complexity Low_complexity 1 39 0 1 1637 1206 55 0 0 chr5 137989351 137989497 -14547762 - B1_Mus2 SINE Alu 0 147 2 1 1637 29 0 0 0 chr5 137989895 137989924 -14547335 + AT_rich Low_complexity Low_complexity 1 29 0 1 1637 248 266 33 122 chr5 137989946 137990036 -14547223 + B1F1 SINE Alu 67 148 -1 1 1637 1439 86 0 5 chr5 137990071 137990259 -14547000 + B2_Mm2 SINE B2 1 187 -8 1 1637 1017 168 44 16 chr5 137990530 137990712 -14546547 - B2_Mm2 SINE B2 -4 191 5 1 1637 210 328 82 49 chr5 137990718 137990744 -14546515 - B2_Mm2 SINE B2 0 195 7 1 1637 656 269 13 6 chr5 137990744 137990901 -14546358 - RSINE1 SINE B4 0 165 8 1 1637 329 179 75 0 chr5 137990978 137991045 -14546214 + PB1D10 SINE Alu 44 115 -2 1 1637 553 202 10 0 chr5 137991047 137991146 -14546113 - PB1D10 SINE Alu -13 104 5 1 1637 296 290 10 106 chr5 137991391 137991495 -14545764 + ZP3AR Satellite Satellite 47 140 -72 1 1637 198 0 0 0 chr5 137991863 137991885 -14545374 + (TTTC)n Simple_repeat Simple_repeat 1 22 0 1 1637 1256 84 0 6 chr5 137991885 137992065 -14545194 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 1 1637 841 201 7 0 chr5 137992110 137992259 -14545000 - B1_Mur4 SINE Alu 0 150 1 1 1637 272 244 118 34 chr5 137992259 137992378 -14544881 - ORR1D1 LTR MaLR -1 369 241 1 1637 286 248 45 45 chr5 137992396 137992506 -14544753 - ORR1D1 LTR MaLR -228 146 37 1 1637 1020 273 28 0 chr5 137992883 137993132 -14544127 - B4A SINE B4 -4 288 33 1 1637 269 289 45 63 chr5 137993165 137993276 -14543983 - PB1D10 SINE Alu -7 110 2 1 1637 385 144 136 55 chr5 137993342 137993429 -14543830 + Lx9 LINE L1 7325 7420 -224 1 1637 1190 114 28 33 chr5 137993429 137993611 -14543648 + B2_Mm2 SINE B2 3 183 -12 1 1637 385 144 136 55 chr5 137993611 137993633 -14543626 + Lx9 LINE L1 7421 7443 -201 1 1637 798 234 114 5 chr5 137993775 137993977 -14543282 + ID_B1 SINE B4 1 224 0 1 1637 1179 75 0 0 chr5 137993989 137994136 -14543123 + B1_Mus1 SINE Alu 2 148 0 1 1637 561 68 0 0 chr5 137994138 137994212 -14543047 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1 1637 198 0 0 0 chr5 137994286 137994308 -14542951 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1 1637 22 35 0 0 chr5 137994756 137994785 -14542474 + GC_rich Low_complexity Low_complexity 1 29 0 1 1637 807 166 14 20 chr5 137995552 137995700 -14541559 + B1_Mur1 SINE Alu 1 147 -2 1 1637 201 208 0 36 chr5 137996134 137996189 -14541070 + CT-rich Low_complexity Low_complexity 1 53 0 1 1637 638 296 26 5 chr5 137996595 137996785 -14540474 + ID_B1 SINE B4 11 204 -20 1 1637 180 0 0 0 chr5 137996861 137996881 -14540378 + (TA)n Simple_repeat Simple_repeat 2 21 0 1 1637 457 268 155 0 chr5 137996909 137997051 -14540208 - RSINE1 SINE B4 0 165 2 1 1637 296 255 135 21 chr5 137997052 137997148 -14540111 - PB1D10 SINE Alu -1 116 10 1 1637 705 209 79 1 chr5 137997156 137997329 -14539930 - B3A SINE B2 -32 184 1 1 1637 905 187 0 0 chr5 137997366 137997516 -14539743 - B1_Mur4 SINE Alu 0 150 1 1 1637 236 77 26 0 chr5 137997549 137997588 -14539671 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1637 490 264 0 0 chr5 137997604 137997710 -14539549 - RSINE1 SINE B4 -15 150 45 1 1637 304 305 89 52 chr5 137997718 137997853 -14539406 - HAL1 LINE L1 -190 2317 2178 1 1637 909 165 0 0 chr5 137997862 137998026 -14539233 + GA-rich Low_complexity Low_complexity 2 165 0 1 1637 296 370 134 7 chr5 137998066 137998365 -14538894 - HAL1 LINE L1 -393 2114 1778 1 1637 266 164 16 194 chr5 137998393 137998522 -14538737 - B2_Mm2 SINE B2 -1 194 89 1 1637 1651 47 0 0 chr5 137998522 137998713 -14538546 + B2_Mm1t SINE B2 2 192 -1 1 1637 1211 34 14 7 chr5 137998714 137998860 -14538399 + B1_Mm SINE Alu 1 147 0 1 1637 228 67 0 0 chr5 137998860 137998890 -14538369 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1637 357 152 0 9 chr5 137998890 137998971 -14538288 + B1_Mm SINE Alu 42 147 0 1 1637 640 188 0 35 chr5 137998952 137999095 -14538164 - B2_Mm2 SINE B2 -55 140 3 1 1637 411 332 62 49 chr5 137999189 137999477 -14537782 - HAL1 LINE L1 -889 1618 1327 1 1637 275 263 25 0 chr5 137999499 137999617 -14537642 + (TG)n Simple_repeat Simple_repeat 2 122 0 1 1637 407 290 28 18 chr5 137999676 137999785 -14537474 - RSINE1 SINE B4 -37 128 19 1 1637 444 321 16 0 chr5 137999806 137999993 -14537266 - HAL1 LINE L1 -1221 1286 1097 1 1637 836 163 35 28 chr5 138000012 138000157 -14537102 - B1_Mus1 SINE Alu -2 146 1 1 1637 630 0 0 0 chr5 138000220 138000290 -14536969 + (TCC)n Simple_repeat Simple_repeat 3 72 0 2 1637 1006 117 14 14 chr5 138000302 138000450 -14536809 - B1_Mus1 SINE Alu 0 148 1 3 1637 271 247 12 38 chr5 138000502 138000582 -14536677 - ID4 SINE ID 0 83 6 4 1637 238 268 58 58 chr5 138000584 138000687 -14536572 - HAL1 LINE L1 -1463 1044 942 5 1637 1209 199 0 0 chr5 138000930 138001136 -14536123 - B3 SINE B2 -8 208 3 6 1637 651 220 80 18 chr5 138001204 138001389 -14535870 - B3A SINE B2 -1 215 28 7 1637 369 304 29 0 chr5 138001682 138001784 -14535475 - B1F1 SINE Alu -36 113 9 8 1637 516 334 73 42 chr5 138001947 138002171 -14535088 - L1MB5 LINE L1 -277 5897 5670 9 1637 834 196 141 0 chr5 138002171 138002355 -14534904 - B3 SINE B2 -6 210 1 1 1637 516 334 73 42 chr5 138002355 138002539 -14534720 - L1MB5 LINE L1 -505 5669 5477 9 1637 1009 60 0 0 chr5 138002543 138002677 -14534582 - B1_Mus2 SINE Alu 0 147 14 1 1637 439 224 44 101 chr5 138002546 138002705 -14534554 - B4A SINE B4 -68 224 75 1 1637 778 210 0 0 chr5 138002720 138002863 -14534396 - RSINE1 SINE B4 -22 143 1 1 1637 422 190 8 74 chr5 138002872 138003026 -14534233 - L1M5 LINE L1 -811 5480 5338 1 1637 589 294 137 0 chr5 138003230 138003427 -14533832 + ID_B1 SINE B4 1 224 0 1 1637 268 186 626 0 chr5 138003446 138003573 -14533686 + B4A SINE B4 1 207 -85 1 1637 234 0 0 0 chr5 138003643 138003669 -14533590 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1637 504 0 0 0 chr5 138003669 138003724 -14533535 + (GA)n Simple_repeat Simple_repeat 2 57 0 1 1637 212 329 44 66 chr5 138003765 138003856 -14533403 + FAM SINE Alu 139 227 -84 1 1637 228 224 78 56 chr5 138003777 138003867 -14533392 + Helitron3Na_Mam RC Helitron 29 120 -366 2 1637 335 261 0 0 chr5 138003881 138003950 -14533309 + ID4_ SINE ID 2 70 -13 2 1637 204 195 12 49 chr5 138004046 138004127 -14533132 + (TATG)n Simple_repeat Simple_repeat 1 78 0 2 1637 458 37 0 0 chr5 138004882 138004936 -14532323 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 1637 594 220 0 0 chr5 138004936 138005077 -14532182 + (TA)n Simple_repeat Simple_repeat 1 141 0 2 1637 23 0 0 0 chr5 138005080 138005103 -14532156 + AT_rich Low_complexity Low_complexity 1 23 0 2 1637 424 214 22 11 chr5 138005163 138005253 -14532006 + B3A SINE B2 1 91 -107 2 1637 397 343 130 20 chr5 138005244 138005497 -14531762 + B4A SINE B4 12 292 0 2 1637 231 177 0 0 chr5 138005497 138005559 -14531700 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1637 663 217 14 14 chr5 138006164 138006304 -14530955 + ID_B1 SINE B4 83 222 -2 2 1637 320 250 66 0 chr5 138006325 138006401 -14530858 + ID SINE ID 2 82 -142 3 1637 221 0 0 33 chr5 138006441 138006471 -14530788 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 3 1637 240 35 0 0 chr5 138006527 138006556 -14530703 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 1637 380 222 137 0 chr5 138006563 138006680 -14530579 - ID_B1 SINE B4 -72 152 20 3 1637 339 44 0 0 chr5 138007108 138007153 -14530106 + (TTGGGG)n Simple_repeat Simple_repeat 1 45 0 3 1637 434 208 9 33 chr5 138007317 138007427 -14529832 + PB1D10 SINE Alu 2 110 -7 3 1637 414 0 0 0 chr5 138007427 138007473 -14529786 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1637 520 275 7 7 chr5 138007532 138007671 -14529588 + ID_B1 SINE B4 86 224 0 3 1637 505 200 0 29 chr5 138008651 138008754 -14528505 + PB1D10 SINE Alu 17 116 -1 3 1637 872 261 86 0 chr5 138008740 138008974 -14528285 - B4 SINE B4 -24 268 15 3 1637 432 296 64 0 chr5 138009196 138009321 -14527938 - B4 SINE B4 -112 180 48 3 1637 346 226 9 9 chr5 138009387 138009494 -14527765 + GA-rich Low_complexity Low_complexity 1 107 0 4 1637 291 303 0 11 chr5 138009839 138009929 -14527330 + PB1D10 SINE Alu 24 112 -5 4 1637 481 252 64 99 chr5 138009946 138010118 -14527141 + B4A SINE B4 2 167 -125 4 1637 1020 89 22 27 chr5 138010245 138010429 -14526830 + ZP3AR Satellite Satellite 30 212 0 4 1637 207 0 0 0 chr5 138011588 138011611 -14525648 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 4 1637 515 264 104 0 chr5 138013264 138013389 -14523870 + ID_B1 SINE B4 86 223 -1 4 1637 21 0 0 0 chr5 138013460 138013481 -14523778 + AT_rich Low_complexity Low_complexity 1 21 0 4 1637 1273 41 0 0 chr5 138013537 138013684 -14523575 - B1_Mm SINE Alu 0 147 1 4 1637 609 279 6 19 chr5 138013720 138013877 -14523382 - RSINE1 SINE B4 -7 158 4 4 1637 252 226 113 0 chr5 138013889 138013951 -14523308 - ID4_ SINE ID -14 69 1 4 1637 457 293 1 17 chr5 138013965 138014087 -14523172 - PB1D10 SINE Alu -19 128 14 5 1637 300 186 0 0 chr5 138014094 138014153 -14523106 + CT-rich Low_complexity Low_complexity 2 60 0 5 1637 566 297 159 0 chr5 138014237 138014419 -14522840 + ID_B1 SINE B4 1 211 -13 5 1637 615 237 29 7 chr5 138014651 138014791 -14522468 + RSINE1 SINE B4 1 143 -22 5 1637 342 0 0 0 chr5 138014823 138014861 -14522398 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1637 23 0 0 0 chr5 138014861 138014884 -14522375 + AT_rich Low_complexity Low_complexity 1 23 0 5 1637 381 267 73 44 chr5 138014968 138015105 -14522154 + B1F2 SINE Alu 2 142 -7 5 1637 204 231 0 0 chr5 138015169 138015221 -14522038 + GA-rich Low_complexity Low_complexity 3 54 0 5 1637 938 133 0 26 chr5 138016278 138016432 -14520827 + B1_Mur4 SINE Alu 1 150 0 5 1637 191 170 0 21 chr5 138016433 138016481 -14520778 + G-rich Low_complexity Low_complexity 4 50 0 5 1637 334 202 61 37 chr5 138016512 138016594 -14520665 + PB1D10 SINE Alu 22 105 -12 6 1637 286 143 32 0 chr5 138016594 138016657 -14520602 + CT-rich Low_complexity Low_complexity 4 68 0 6 1637 1083 309 84 2 chr5 138016702 138017108 -14520151 - RCHARR1 DNA MER1_type -533 441 3 6 1637 882 0 0 0 chr5 138017359 138017457 -14519802 + (TTC)n Simple_repeat Simple_repeat 2 99 0 6 1637 2305 53 18 0 chr5 138017478 138017762 -14519497 - L1Md_F2 LINE L1 -3 6579 6291 6 1637 906 116 66 99 chr5 138017775 138017957 -14519302 + B2_Mm2 SINE B2 11 186 -9 6 1637 520 294 7 7 chr5 138017986 138018123 -14519136 + ID_B1 SINE B4 86 222 -2 6 1637 448 259 70 18 chr5 138018128 138018242 -14519017 + RSINE1 SINE B4 3 122 -43 6 1637 319 183 0 16 chr5 138018294 138018355 -14518904 + ID SINE ID 21 80 -144 6 1637 987 184 27 5 chr5 138018335 138018521 -14518738 - B3 SINE B2 -25 191 2 6 1638 809 260 17 30 chr5 138019141 138019371 -14517888 + B4 SINE B4 1 227 -65 7 1638 556 253 66 7 chr5 138019373 138019524 -14517735 + RSINE1 SINE B4 6 165 0 7 1638 1200 62 7 0 chr5 138019585 138019731 -14517528 + B1_Mus2 SINE Alu 1 147 0 7 1638 291 177 0 0 chr5 138019803 138019865 -14517394 + (CA)n Simple_repeat Simple_repeat 1 62 0 7 1638 477 226 0 81 chr5 138020731 138020842 -14516417 + PB1D10 SINE Alu 1 102 -15 7 1638 608 238 72 33 chr5 138021001 138021063 -14516196 + ID SINE ID 13 80 -144 7 1638 415 262 27 36 chr5 138021063 138021174 -14516085 + PB1D10 SINE Alu 3 112 -5 7 1638 596 323 6 0 chr5 138021702 138021863 -14515396 + RSINE1 SINE B4 2 163 -2 7 1638 1323 109 22 0 chr5 138021875 138022058 -14515201 + B2_Mm2 SINE B2 1 187 -8 7 1638 594 236 0 38 chr5 138022077 138022209 -14515050 + ID_B1 SINE B4 98 224 0 6 1638 194 33 67 0 chr5 138022211 138022241 -14515018 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 7 1638 446 254 16 25 chr5 138022261 138022382 -14514877 + PB1D9 SINE Alu 1 120 0 8 1638 769 191 14 14 chr5 138022405 138022548 -14514711 + B1_Mus1 SINE Alu 5 147 -1 8 1638 320 300 22 0 chr5 138022565 138022655 -14514604 + ID_B1 SINE B4 81 172 -52 8 1638 273 311 29 19 chr5 138022570 138022675 -14514584 + PB1D10 SINE Alu 5 110 -7 8 1638 611 286 0 20 chr5 138022682 138022832 -14514427 + B1F1 SINE Alu 2 148 -1 8 1638 639 26 0 0 chr5 138022918 138022995 -14514264 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 8 1638 305 75 0 19 chr5 138023194 138023248 -14514011 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 8 1638 519 92 26 0 chr5 138023259 138023335 -14513924 - B1_Mur4 SINE Alu -30 120 43 8 1638 333 225 0 14 chr5 138023355 138023427 -14513832 + ID_B1 SINE B4 146 216 -8 8 1638 268 163 61 0 chr5 138023384 138023433 -14513826 + PB1D7 SINE Alu 67 118 -2 8 1638 349 238 48 29 chr5 138023461 138023565 -14513694 + RSINE1 SINE B4 58 163 -2 8 1638 21 0 0 0 chr5 138025300 138025321 -14511938 + GC_rich Low_complexity Low_complexity 1 21 0 9 1638 245 266 61 50 chr5 138025506 138025605 -14511654 + MER58D DNA MER1_type 286 385 -1 9 1638 269 224 66 0 chr5 138025829 138025851 -14511408 - ID4 SINE ID -2 81 59 9 1638 325 250 28 0 chr5 138025851 138025923 -14511336 - ID4 SINE ID -9 74 1 9 1638 269 224 66 0 chr5 138025923 138025976 -14511283 - ID4 SINE ID -25 58 2 9 1638 1434 50 8 0 chr5 138025976 138026133 -14511126 - ZP3AR Satellite Satellite -11 211 1 9 1638 377 302 17 8 chr5 138026147 138026267 -14510992 - B1F SINE Alu -8 141 21 9 1638 387 0 0 0 chr5 138026578 138026621 -14510638 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 9 1638 307 354 0 0 chr5 138026666 138026765 -14510494 - MIR SINE MIR -142 120 22 9 1638 228 288 15 15 chr5 138026776 138026843 -14510416 + GA-rich Low_complexity Low_complexity 4 70 0 9 1638 271 267 17 0 chr5 138026844 138026904 -14510355 + ID SINE ID 2 62 -162 9 1638 356 226 129 108 chr5 138027232 138027371 -14509888 + B1F SINE Alu 7 148 -1 1 1638 1163 252 43 7 chr5 138027390 138027666 -14509593 + B4A SINE B4 7 292 0 1 1638 522 223 41 16 chr5 138027690 138027813 -14509446 + B3 SINE B2 88 213 -3 1 1638 618 265 0 0 chr5 138028872 138029008 -14508251 + RSINE1 SINE B4 2 137 -28 1 1638 958 174 39 35 chr5 138029051 138029254 -14508005 + B3 SINE B2 11 214 -2 1 1638 23 0 0 0 chr5 138029255 138029278 -14507981 + AT_rich Low_complexity Low_complexity 1 23 0 1 1638 369 235 0 184 chr5 138029295 138029436 -14507823 + B1_Mur2 SINE Alu 19 133 -16 1 1638 243 0 0 0 chr5 138029437 138029464 -14507795 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 1638 324 0 0 0 chr5 138029464 138029499 -14507760 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1638 1358 75 16 0 chr5 138029630 138029817 -14507442 + B2_Mm2 SINE B2 6 195 0 1 1638 305 224 0 38 chr5 138029830 138029909 -14507350 + B4 SINE B4 217 292 0 1 1638 210 171 0 0 chr5 138029909 138029950 -14507309 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1638 25 31 0 0 chr5 138030107 138030139 -14507120 + AT_rich Low_complexity Low_complexity 1 32 0 1 1638 785 169 0 6 chr5 138030139 138030300 -14506959 + (TA)n Simple_repeat Simple_repeat 1 160 0 1 1638 459 297 62 0 chr5 138030300 138030428 -14506831 - RSINE1 SINE B4 -22 143 8 1 1638 525 16 0 0 chr5 138030465 138030527 -14506732 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1638 561 183 167 0 chr5 138030530 138030650 -14506609 - B1_Mur2 SINE Alu -8 141 2 1 1638 366 191 20 110 chr5 138030669 138030769 -14506490 - PB1D10 SINE Alu 0 117 27 1 1638 1215 102 11 5 chr5 138030777 138030965 -14506294 - B2_Mm2 SINE B2 0 195 7 1 1638 24 42 0 20 chr5 138031066 138031092 -14506167 + AT_rich Low_complexity Low_complexity 1 26 0 1 1638 803 223 94 20 chr5 138031092 138031293 -14505966 - B3 SINE B2 0 216 1 1 1638 24 42 0 20 chr5 138031293 138031315 -14505944 + AT_rich Low_complexity Low_complexity 1 22 0 1 1638 296 265 35 24 chr5 138031321 138031335 -14505924 + MT2B LTR ERVL 154 168 -433 1 1638 500 171 248 0 chr5 138031335 138031452 -14505807 + B1_Mur2 SINE Alu 4 149 0 1 1638 188 35 35 0 chr5 138031456 138031485 -14505774 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1 1638 1641 42 0 20 chr5 138031537 138031733 -14505526 + B2_Mm1t SINE B2 1 192 -1 1 1638 411 253 0 21 chr5 138031772 138031869 -14505390 + B3A SINE B2 18 112 -86 1 1638 1051 192 103 21 chr5 138031876 138032184 -14505075 + ORR1D1 LTR MaLR 1 363 -11 1 1638 1224 79 83 22 chr5 138032196 138032377 -14504882 + B2_Mm2 SINE B2 1 192 -3 1 1638 201 39 0 0 chr5 138032423 138032449 -14504810 + (CA)n Simple_repeat Simple_repeat 1 26 0 1 1638 821 161 88 0 chr5 138032515 138032652 -14504607 + B1_Mur3 SINE Alu 1 149 0 1 1638 725 283 17 30 chr5 138032950 138033182 -14504077 + B4A SINE B4 1 229 -63 1 1638 668 168 52 30 chr5 138033182 138033317 -14503942 + RSINE1 SINE B4 2 139 -26 1 1638 308 181 84 61 chr5 138033376 138033475 -14503784 + B4A SINE B4 217 286 -6 1 1638 621 289 9 43 chr5 138033859 138034069 -14503190 + B3 SINE B2 1 203 -13 1 1638 872 292 5 5 chr5 138034107 138034327 -14502932 + ID_B1 SINE B4 2 221 -3 1 1638 611 250 35 28 chr5 138034352 138034496 -14502763 + RSINE1 SINE B4 2 146 -19 1 1638 308 280 69 10 chr5 138034682 138034741 -14502518 + L1MEe LINE L1 715 777 -4077 1 1638 1304 20 0 0 chr5 138034741 138034888 -14502371 + B1_Mm SINE Alu 1 147 0 1 1638 308 280 69 10 chr5 138034888 138034929 -14502330 + L1MEe LINE L1 778 821 -4033 1 1638 618 82 0 0 chr5 138034929 138035014 -14502245 + (GGAGA)n Simple_repeat Simple_repeat 1 85 0 1 1638 438 178 0 47 chr5 138035016 138035122 -14502137 + Lx2B LINE L1 6896 6996 -4 1 1638 1357 93 0 16 chr5 138035170 138035355 -14501904 + B2_Mm2 SINE B2 1 182 -13 1 1638 1049 52 19 7 chr5 138035355 138035509 -14501750 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 1 1638 1974 232 46 8 chr5 138035598 138036098 -14501161 - MT2A LTR ERVL -1 532 14 1 1638 225 329 14 0 chr5 138036195 138036268 -14500991 - ID4 SINE ID -4 79 6 1 1638 264 359 104 14 chr5 138036233 138036282 -14500977 - ID_B1 SINE B4 -59 165 111 1 1638 243 0 0 0 chr5 138036282 138036309 -14500950 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1638 264 359 104 14 chr5 138036309 138036330 -14500929 - ID_B1 SINE B4 -114 110 9 1 1638 304 329 0 0 chr5 138036330 138036403 -14500856 - ID4 SINE ID -2 81 9 1 1638 442 127 56 0 chr5 138036407 138036478 -14500781 - B1_Mm SINE Alu -30 117 43 1 1638 719 213 156 33 chr5 138036638 138036818 -14500441 + B3 SINE B2 5 206 -10 1 1638 1148 257 37 45 chr5 138036957 138037312 -14499947 - MTE2b LTR MaLR -13 366 15 1 1638 406 311 7 83 chr5 138037435 138037537 -14499722 + RSINE1 SINE B4 33 130 -35 1 1638 1572 43 5 0 chr5 138037537 138037724 -14499535 - B2_Mm1a SINE B2 -4 189 2 1 1638 406 311 7 83 chr5 138037724 138037765 -14499494 + RSINE1 SINE B4 131 165 0 1 1638 222 315 0 0 chr5 138037766 138037820 -14499439 + (CACG)n Simple_repeat Simple_repeat 2 55 0 1 1638 324 265 45 17 chr5 138037960 138038167 -14499092 + GA-rich Low_complexity Low_complexity 1 212 0 1 1638 519 215 0 192 chr5 138038651 138038725 -14498534 - ID_B1 SINE B4 -8 216 156 1 1638 1180 68 0 20 chr5 138038725 138038876 -14498383 + B1_Mus1 SINE Alu 1 148 0 1 1638 519 215 0 192 chr5 138038876 138038968 -14498291 - ID_B1 SINE B4 -69 155 82 1 1638 486 288 79 26 chr5 138039041 138039230 -14498029 - B4 SINE B4 -51 241 43 1 1638 293 282 55 55 chr5 138039267 138039376 -14497883 - PB1D10 SINE Alu -3 114 6 1 1638 1145 95 98 29 chr5 138039576 138039750 -14497509 + B2_Mm2 SINE B2 1 186 -9 1 1638 180 0 0 0 chr5 138039750 138039770 -14497489 + (GA)n Simple_repeat Simple_repeat 2 21 0 1 1638 1093 12 43 6 chr5 138039936 138040100 -14497159 + (CA)n Simple_repeat Simple_repeat 2 171 0 1 1638 916 56 11 48 chr5 138040112 138040299 -14496960 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1638 718 303 50 22 chr5 138040470 138040747 -14496512 + B4A SINE B4 6 290 -2 1 1638 342 0 0 0 chr5 138040764 138040802 -14496457 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1638 204 288 106 0 chr5 138040890 138040956 -14496303 + L3 LINE CR1 904 976 -3513 1 1638 22 0 0 0 chr5 138042568 138042590 -14494669 + AT_rich Low_complexity Low_complexity 1 22 0 1 1638 355 226 192 8 chr5 138042612 138042737 -14494522 + B3 SINE B2 51 198 -18 1 1638 447 231 89 49 chr5 138043656 138043779 -14493480 + B1F2 SINE Alu 14 141 -8 1 1638 607 184 9 17 chr5 138043804 138043920 -14493339 + PB1D9 SINE Alu 6 120 0 1 1638 375 314 10 10 chr5 138043937 138044040 -14493219 + RSINE1 SINE B4 3 105 -60 1 1638 719 165 158 0 chr5 138044120 138044247 -14493012 + B1_Mus2 SINE Alu 1 147 0 1 1638 25 65 0 0 chr5 138044247 138044293 -14492966 + AT_rich Low_complexity Low_complexity 1 46 0 1 1638 494 212 3 2 chr5 138044363 138044474 -14492785 - B1_Mus1 SINE Alu -6 111 1 1 1638 790 131 191 48 chr5 138044487 138044655 -14492604 - B2_Mm2 SINE B2 -1 194 3 1 1638 709 266 0 17 chr5 138044781 138044961 -14492298 + B2_Mm2 SINE B2 18 194 -1 1 1638 195 330 23 0 chr5 138045007 138045095 -14492164 - L2a LINE L2 -287 3139 3050 1 1638 589 245 98 39 chr5 138045268 138045421 -14491838 + B3A SINE B2 1 162 -36 1 1638 268 284 159 0 chr5 138045512 138045600 -14491659 - RSINE1 SINE B4 -62 103 2 1 1638 796 143 28 14 chr5 138045619 138045761 -14491498 - B1_Mur4 SINE Alu -1 149 6 1 1638 1267 19 118 0 chr5 138045818 138045979 -14491280 + B2_Mm2 SINE B2 2 181 -14 1 1638 1189 69 51 23 chr5 138045979 138046156 -14491103 - B2_Mm1t SINE B2 -10 183 2 1 1638 236 290 0 61 chr5 138046196 138046262 -14490997 + ID4 SINE ID 20 81 -2 1 1638 252 0 0 0 chr5 138046547 138046575 -14490684 + (GGA)n Simple_repeat Simple_repeat 2 29 0 1 1638 277 305 12 0 chr5 138047293 138047375 -14489884 - ID4 SINE ID 0 83 1 1 1638 735 209 26 37 chr5 138047375 138047556 -14489703 - ZP3AR Satellite Satellite -10 202 24 1 1638 948 152 0 0 chr5 138047682 138047847 -14489412 + (TGGA)n Simple_repeat Simple_repeat 1 165 0 1 1638 712 139 0 0 chr5 138047923 138048031 -14489228 - B3 SINE B2 -108 108 1 1 1638 303 28 0 0 chr5 138048927 138048963 -14488296 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1638 412 284 45 9 chr5 138050621 138050731 -14486528 + PB1D7 SINE Alu 1 114 -6 1 1638 338 271 73 18 chr5 138050745 138050854 -14486405 + PB1D10 SINE Alu 3 117 0 1 1638 610 239 169 63 chr5 138050865 138051120 -14486139 + B4A SINE B4 5 286 -6 1 1638 1271 34 0 0 chr5 138051169 138051315 -14485944 + B1_Mus2 SINE Alu 2 147 0 1 1638 206 136 0 64 chr5 138051316 138051363 -14485896 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 1 1638 296 246 0 0 chr5 138051364 138051429 -14485830 + ID4_ SINE ID 8 72 -11 1 1638 324 0 0 0 chr5 138052593 138052629 -14484630 + (CAG)n Simple_repeat Simple_repeat 1 36 0 1 1638 407 243 36 0 chr5 138052970 138053081 -14484178 - PB1D10 SINE Alu 0 117 3 1 1638 370 268 9 35 chr5 138053360 138053476 -14483783 + PB1D10 SINE Alu 4 116 -1 1 1638 525 110 0 0 chr5 138055352 138055434 -14481825 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1638 227 333 16 64 chr5 138055635 138055760 -14481499 - FAM SINE Alu -56 255 137 1 1638 455 289 0 50 chr5 138055711 138055766 -14481493 - B4 SINE B4 -157 135 82 1 1638 270 56 0 0 chr5 138055766 138055802 -14481457 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 1 1638 455 289 0 50 chr5 138055802 138055866 -14481393 - B4 SINE B4 -211 81 22 1 1638 228 320 38 25 chr5 138055897 138055977 -14481282 - ID4_ SINE ID -1 82 2 2 1638 1390 94 11 0 chr5 138056061 138056252 -14481007 + B2_Mm1t SINE B2 1 193 0 2 1638 1022 107 19 0 chr5 138056252 138056411 -14480848 + B2_Mm2 SINE B2 29 190 -5 2 1638 317 252 109 109 chr5 138056533 138056680 -14480579 - RSINE1 SINE B4 -8 157 11 2 1638 567 160 19 9 chr5 138056732 138056839 -14480420 + ORR1C2 LTR MaLR 1 108 -276 2 1638 435 160 240 0 chr5 138057356 138057456 -14479803 + ORR1C2 LTR MaLR 261 384 0 2 1638 696 279 22 0 chr5 138057456 138057632 -14479627 - ID_B1 SINE B4 -18 206 27 2 1638 383 277 92 0 chr5 138058163 138058282 -14478977 - ID_B1 SINE B4 -1 223 94 2 1638 234 229 27 54 chr5 138058272 138058289 -14478970 + ID_B1 SINE B4 76 115 -109 2 1638 284 152 0 0 chr5 138058289 138058335 -14478924 + PB1D9 SINE Alu 9 54 -66 2 1638 234 229 27 54 chr5 138058335 138058346 -14478913 + ID_B1 SINE B4 116 147 -77 2 1638 424 131 5 74 chr5 138058346 138058536 -14478723 + GA-rich Low_complexity Low_complexity 4 180 0 2 1638 699 104 19 0 chr5 138058612 138058718 -14478541 + B1_Mur4 SINE Alu 43 150 0 2 1638 316 286 28 9 chr5 138058723 138058829 -14478430 - ID_B1 SINE B4 -113 111 4 2 1638 1048 245 31 4 chr5 138059079 138059354 -14477905 - B4A SINE B4 -10 282 5 2 1638 471 121 39 39 chr5 138060314 138060469 -14476790 + (TG)n Simple_repeat Simple_repeat 2 156 0 2 1638 316 94 56 56 chr5 138060469 138060559 -14476700 + (TATG)n Simple_repeat Simple_repeat 3 92 0 2 1638 276 279 51 0 chr5 138060712 138060791 -14476468 - B4A SINE B4 -204 88 6 2 1638 364 264 127 0 chr5 138061101 138061211 -14476048 + RSINE1 SINE B4 3 126 -39 2 1638 516 59 0 0 chr5 138061238 138061306 -14475953 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1638 434 245 0 38 chr5 138061325 138061431 -14475828 + B1_Mur1 SINE Alu 48 149 0 2 1638 279 288 128 30 chr5 138061945 138062096 -14475163 - B4A SINE B4 -119 173 9 2 1638 581 250 50 31 chr5 138062098 138062259 -14475000 - ID_B1 SINE B4 -2 222 59 2 1638 320 297 11 10 chr5 138062792 138062893 -14474366 + ID4_ SINE ID 6 111 -41 2 1638 311 329 177 25 chr5 138063795 138064038 -14473221 + B4 SINE B4 3 282 -10 2 1638 688 246 33 145 chr5 138064120 138064352 -14472907 + B4A SINE B4 5 227 -65 2 1638 1221 151 43 24 chr5 138064352 138064563 -14472696 + B3 SINE B2 2 216 0 2 1638 688 246 33 145 chr5 138064563 138064634 -14472625 + B4A SINE B4 228 274 -18 2 1638 393 22 0 0 chr5 138064663 138064709 -14472550 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1638 1042 104 91 6 chr5 138064965 138065130 -14472129 + B2_Mm1t SINE B2 1 179 -14 2 1638 374 106 0 5 chr5 138065196 138065261 -14471998 + B2_Mm2 SINE B2 47 109 -107 2 1638 21 36 0 0 chr5 138065273 138065301 -14471958 + AT_rich Low_complexity Low_complexity 1 28 0 2 1638 916 250 0 61 chr5 138066641 138066871 -14470388 + ID_B1 SINE B4 9 224 0 2 1638 405 0 0 0 chr5 138067488 138067533 -14469726 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1638 285 253 106 32 chr5 138067536 138067630 -14469629 - RSINE1 SINE B4 -5 160 60 2 1638 679 243 13 40 chr5 138067672 138067731 -14469528 - B1_Mur2 SINE Alu -3 146 91 2 1638 428 18 36 0 chr5 138067731 138067787 -14469472 + (TTAGGG)n Simple_repeat Simple_repeat 2 59 0 2 1638 679 243 13 40 chr5 138067787 138067877 -14469382 - B1_Mur2 SINE Alu -59 90 1 2 1638 22 0 0 0 chr5 138067877 138067899 -14469360 + AT_rich Low_complexity Low_complexity 1 22 0 2 1638 1261 27 7 0 chr5 138067902 138068048 -14469211 + B1_Mm SINE Alu 1 147 0 2 1638 542 258 83 6 chr5 138068064 138068232 -14469027 - B3A SINE B2 -11 187 7 2 1638 335 299 74 84 chr5 138068243 138068433 -14468826 - B3A SINE B2 -10 188 1 2 1638 543 248 39 23 chr5 138068585 138068713 -14468546 + ID_B1 SINE B4 88 217 -7 2 1638 291 28 0 0 chr5 138069063 138069099 -14468160 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2 1638 346 269 31 78 chr5 138069099 138069228 -14468031 - B1F2 SINE Alu -4 123 1 2 1638 980 129 7 26 chr5 138069347 138069498 -14467761 + B1_Mur4 SINE Alu 1 148 -2 2 1638 240 253 79 59 chr5 138073777 138073878 -14463381 - B4A SINE B4 -150 142 40 2 1638 236 315 27 0 chr5 138074057 138074130 -14463129 + B4A SINE B4 57 131 -161 2 1638 274 267 0 0 chr5 138074134 138074194 -14463065 - B1F SINE Alu -89 60 1 2 1638 883 274 74 49 chr5 138074390 138074674 -14462585 - B4 SINE B4 0 292 2 2 1638 473 256 126 153 chr5 138075520 138075797 -14461462 - MLT1A0 LTR MaLR 0 365 85 2 1638 4320 66 12 11 chr5 138075797 138076361 -14460898 - L1_Mus2 LINE L1 0 6566 6002 2 1638 473 256 126 153 chr5 138076361 138076448 -14460811 - MLT1A0 LTR MaLR -281 84 11 2 1638 792 150 0 0 chr5 138077393 138077513 -14459746 - PB1D9 SINE Alu 0 120 1 2 1638 265 225 137 84 chr5 138077517 138077648 -14459611 - B1_Mur4 SINE Alu 0 150 13 2 1638 407 257 119 21 chr5 138077534 138077677 -14459582 - ID_B1 SINE B4 -1 223 67 2 1638 369 0 0 0 chr5 138080006 138080047 -14457212 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1638 1129 82 0 0 chr5 138080051 138080198 -14457061 - B1_Mus1 SINE Alu 0 148 2 2 1638 180 0 0 0 chr5 138086050 138086070 -14451189 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1638 1095 44 73 0 chr5 138086091 138086227 -14451032 + B1_Mus2 SINE Alu 2 147 0 2 1638 511 272 84 34 chr5 138087726 138087905 -14449354 - B4 SINE B4 -20 272 85 2 1638 1265 41 0 0 chr5 138088005 138088152 -14449107 - B1_Mm SINE Alu 0 147 1 2 1638 369 141 64 0 chr5 138088231 138088309 -14448950 - PB1D9 SINE Alu -2 118 36 2 1638 266 335 52 87 chr5 138088309 138088460 -14448799 - ID_B1 SINE B4 -3 221 1 2 1638 547 165 118 34 chr5 138088855 138088974 -14448285 - B1_Mus1 SINE Alu -19 129 1 2 1638 310 318 72 71 chr5 138089155 138089362 -14447897 + B4A SINE B4 8 221 -71 2 1638 279 303 107 53 chr5 138090632 138090697 -14446562 + ID_B1 SINE B4 59 216 -8 2 1638 390 198 0 47 chr5 138090697 138090782 -14446477 + B1F1 SINE Alu 61 141 -8 2 1638 387 227 68 0 chr5 138090813 138090901 -14446358 + B1F SINE Alu 1 94 -55 2 1638 189 0 0 0 chr5 138090911 138090932 -14446327 + (TGG)n Simple_repeat Simple_repeat 1 21 0 2 1638 197 108 27 0 chr5 138091017 138091054 -14446205 + (TCCC)n Simple_repeat Simple_repeat 1 38 0 2 1638 180 0 0 0 chr5 138091690 138091710 -14445549 + (T)n Simple_repeat Simple_repeat 1 20 0 2 1638 210 71 0 0 chr5 138091793 138091821 -14445438 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1638 229 289 0 0 chr5 138091992 138092005 -14445254 - ZP3AR Satellite Satellite -117 95 44 2 1638 238 179 0 0 chr5 138092005 138092044 -14445215 - ID4 SINE ID -43 40 2 2 1638 333 270 22 22 chr5 138092079 138092170 -14445089 - PB1D10 SINE Alu 0 117 27 2 1638 220 229 0 0 chr5 138092201 138092249 -14445010 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 1638 526 225 9 9 chr5 138093194 138093306 -14443953 + PB1D10 SINE Alu 1 112 -5 2 1638 605 271 107 56 chr5 138093339 138093573 -14443686 + B4A SINE B4 46 291 -1 2 1638 660 62 307 18 chr5 138094038 138094152 -14443107 + B1_Mus1 SINE Alu 2 148 0 2 1638 447 170 100 36 chr5 138094168 138094278 -14442981 + PB1D10 SINE Alu 1 117 0 2 1638 658 199 50 25 chr5 138094298 138094458 -14442801 + RSINE1 SINE B4 2 165 0 2 1638 285 227 3 0 chr5 138094480 138094554 -14442705 + B3 SINE B2 3 77 -118 2 1638 377 223 221 9 chr5 138095383 138095496 -14441763 - ID_B1 SINE B4 -8 216 80 2 1638 423 98 0 0 chr5 138095563 138095624 -14441635 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1638 205 111 43 22 chr5 138095942 138095988 -14441271 + CT-rich Low_complexity Low_complexity 2 48 0 2 1638 652 173 42 0 chr5 138096028 138096172 -14441087 - B1F1 SINE Alu 0 149 8 2 1638 529 215 44 63 chr5 138096036 138096195 -14441064 - ID_B1 SINE B4 0 224 69 2 1638 513 222 256 19 chr5 138097174 138097189 -14440070 - ID_B1 SINE B4 -54 238 203 2 1638 543 140 10 39 chr5 138097189 138097293 -14439966 - PB1D10 SINE Alu 0 117 17 2 1638 513 222 256 19 chr5 138097293 138097370 -14439889 - ID_B1 SINE B4 -54 202 1 2 1638 952 149 14 0 chr5 138097388 138097536 -14439723 + B1_Mur4 SINE Alu 1 150 0 2 1638 268 305 37 0 chr5 138097680 138097762 -14439497 - PB1D7 SINE Alu -7 113 29 2 1638 396 189 13 39 chr5 138097826 138097903 -14439356 - ID4_ SINE ID -7 76 2 2 1638 362 300 0 12 chr5 138098021 138098102 -14439157 - RSINE1 SINE B4 -84 81 2 2 1638 22 35 0 0 chr5 138098411 138098440 -14438819 + AT_rich Low_complexity Low_complexity 1 29 0 2 1638 495 250 43 0 chr5 138098447 138098563 -14438696 - RSINE1 SINE B4 -28 137 17 2 1638 346 195 0 79 chr5 138098673 138098685 -14438574 - ID4 SINE ID 0 83 2 2 1638 368 224 0 13 chr5 138098685 138098762 -14438497 - ID SINE ID -147 77 2 2 1638 713 285 15 15 chr5 138098967 138099170 -14438089 - ID_B1 SINE B4 -1 223 21 2 1638 1165 200 15 0 chr5 138099227 138099427 -14437832 - B3 SINE B2 -10 206 4 2 1638 862 209 101 10 chr5 138099524 138099722 -14437537 + B3 SINE B2 1 216 0 2 1638 28 0 0 0 chr5 138099729 138099757 -14437502 + AT_rich Low_complexity Low_complexity 1 28 0 2 1638 1179 93 0 6 chr5 138099968 138100125 -14437134 + B2_Mm2 SINE B2 3 159 -36 2 1638 207 0 0 0 chr5 138100125 138100148 -14437111 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2 1638 1179 93 0 6 chr5 138100148 138100162 -14437097 + B2_Mm2 SINE B2 160 173 -22 2 1638 553 105 0 44 chr5 138100155 138100245 -14437014 + B1_Mur3 SINE Alu 64 149 0 2 1638 333 309 7 35 chr5 138100366 138100507 -14436752 - RSINE1 SINE B4 -3 162 26 2 1638 220 323 0 16 chr5 138100532 138100595 -14436664 + PB1 SINE Alu 64 125 -2 3 1638 1472 63 8 1 chr5 138100608 138100949 -14436310 + ZP3AR Satellite Satellite 1 343 0 3 1638 858 182 35 14 chr5 138101186 138101331 -14435928 - B1_Mur1 SINE Alu -1 148 1 3 1638 501 246 39 8 chr5 138101813 138101940 -14435319 + RSINE1 SINE B4 3 133 -32 3 1638 21 36 0 0 chr5 138101984 138102012 -14435247 + AT_rich Low_complexity Low_complexity 1 28 0 3 1638 1159 96 66 0 chr5 138102012 138102178 -14435081 + B2_Mm1t SINE B2 2 178 -15 3 1638 322 78 375 19 chr5 138102211 138102315 -14434944 + B2_Mm2 SINE B2 47 187 -8 3 1638 341 157 28 14 chr5 138102814 138102881 -14434378 + MTD LTR MaLR 13 80 -339 3 1638 473 241 42 49 chr5 138102881 138103025 -14434234 + B1_Mur3 SINE Alu 2 144 -5 3 1638 554 229 55 37 chr5 138103021 138103184 -14434075 + MTD LTR MaLR 68 233 -186 3 1638 357 213 13 0 chr5 138103154 138103229 -14434030 + B1_Mur1 SINE Alu 74 149 0 3 1638 666 217 77 6 chr5 138103234 138103415 -14433844 + MTD LTR MaLR 196 389 -30 3 1638 226 277 45 98 chr5 138103439 138103551 -14433708 + MT2B2 LTR ERVL 134 239 -345 3 1638 439 246 26 43 chr5 138103474 138103589 -14433670 + PB1D7 SINE Alu 7 119 -1 3 1638 462 230 10 10 chr5 138103652 138103753 -14433506 + B4 SINE B4 106 206 -86 3 1638 374 288 129 62 chr5 138103813 138103847 -14433412 + B2_Mm2 SINE B2 1 34 -161 3 1638 1447 85 37 0 chr5 138103847 138104035 -14433224 - B2_Mm2 SINE B2 0 195 1 3 1638 374 288 129 62 chr5 138104035 138104178 -14433081 + B2_Mm2 SINE B2 35 190 -5 3 1638 279 294 0 0 chr5 138104367 138104435 -14432824 - PB1D10 SINE Alu -49 68 1 3 1638 548 168 59 0 chr5 138105083 138105184 -14432075 - PB1D9 SINE Alu -13 107 1 3 1638 787 143 0 8 chr5 138105746 138105873 -14431386 + B1_Mus1 SINE Alu 13 138 -10 3 1638 1524 59 2 0 chr5 138105977 138106271 -14430988 - ZP3AR Satellite Satellite -34 294 1 3 1638 318 152 125 42 chr5 138106316 138106412 -14430847 - B1_Mur4 SINE Alu 0 150 47 3 1638 234 91 0 0 chr5 138106464 138106497 -14430762 + (TTA)n Simple_repeat Simple_repeat 2 34 0 3 1638 389 301 142 35 chr5 138106517 138106658 -14430601 - RSINE1 SINE B4 -3 162 7 3 1638 404 252 93 0 chr5 138106665 138106772 -14430487 - PB1D10 SINE Alu 0 117 1 3 1638 922 152 14 20 chr5 138106858 138107006 -14430253 - B1_Mur3 SINE Alu 0 149 3 3 1638 492 18 0 0 chr5 138107181 138107238 -14430021 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1638 1438 94 5 0 chr5 138107300 138107492 -14429767 - B2_Mm1t SINE B2 0 193 1 3 1638 281 301 26 17 chr5 138107497 138107612 -14429647 - B1F SINE Alu -2 147 32 3 1638 330 262 119 0 chr5 138107785 138107869 -14429390 + B4A SINE B4 9 102 -190 3 1638 500 110 0 0 chr5 138107883 138107956 -14429303 + B2_Mm2 SINE B2 2 74 -121 3 1638 491 227 0 0 chr5 138107958 138108046 -14429213 - B1_Mur4 SINE Alu -56 94 7 3 1638 381 238 0 12 chr5 138108047 138108128 -14429131 - ID_B1 SINE B4 -66 158 79 3 1638 337 266 13 0 chr5 138108719 138108798 -14428461 + RSINE1 SINE B4 50 129 -36 3 1638 1492 65 4 3 chr5 138109110 138109447 -14427812 + ZP3AR Satellite Satellite 1 337 0 3 1638 216 337 0 46 chr5 138109427 138109514 -14427745 + ID4_ SINE ID 1 83 0 3 1638 978 155 0 0 chr5 138109604 138109918 -14427341 + GA-rich Low_complexity Low_complexity 1 314 0 3 1638 333 0 0 0 chr5 138109922 138109959 -14427300 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 3 1638 502 267 141 0 chr5 138109972 138110107 -14427152 + RSINE1 SINE B4 3 156 -9 3 1638 31 0 0 0 chr5 138110107 138110138 -14427121 + AT_rich Low_complexity Low_complexity 1 31 0 3 1638 1345 108 38 0 chr5 138110845 138111030 -14426229 - B2_Mm2 SINE B2 -3 192 1 3 1638 369 191 319 34 chr5 138111073 138111192 -14426067 - RSINE1 SINE B4 -11 154 2 3 1638 770 216 168 0 chr5 138111366 138111556 -14425703 + ID_B1 SINE B4 1 222 -2 3 1638 761 185 138 36 chr5 138111569 138111746 -14425513 + B3 SINE B2 1 201 -15 3 1638 185 0 0 39 chr5 138111746 138111772 -14425487 + (CATA)n Simple_repeat Simple_repeat 3 27 0 3 1638 731 185 138 36 chr5 138111772 138111790 -14425469 + B3 SINE B2 202 216 0 3 1638 556 219 203 22 chr5 138112304 138112486 -14424773 - ID_B1 SINE B4 -7 217 3 3 1638 879 102 0 0 chr5 138112531 138112668 -14424591 + (CA)n Simple_repeat Simple_repeat 1 137 0 3 1638 348 24 0 0 chr5 138113632 138113673 -14423586 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1638 453 239 55 61 chr5 138113707 138113872 -14423387 - B4A SINE B4 -74 218 55 3 1638 579 245 67 47 chr5 138114008 138114201 -14423058 - ID_B1 SINE B4 -27 197 1 3 1638 519 274 22 7 chr5 138114711 138114847 -14422412 - RSINE1 SINE B4 -17 148 11 3 1638 250 263 0 109 chr5 138115083 138115147 -14422112 - B1F2 SINE Alu -90 57 1 3 1638 402 74 0 0 chr5 138115175 138115229 -14422030 + (TCCA)n Simple_repeat Simple_repeat 4 57 0 3 1638 441 279 95 7 chr5 138115309 138115457 -14421802 - RSINE1 SINE B4 -1 164 4 3 1638 215 262 63 32 chr5 138115462 138115525 -14421734 - PB1D10 SINE Alu -1 116 52 3 1638 1278 105 0 6 chr5 138115595 138115768 -14421491 - B2_Mm2 SINE B2 -19 176 5 3 1638 288 194 129 0 chr5 138115808 138115870 -14421389 + B4 SINE B4 24 93 -199 3 1638 881 137 7 33 chr5 138115872 138116023 -14421236 + B1_Mur3 SINE Alu 3 149 0 3 1638 711 288 35 47 chr5 138116653 138116908 -14420351 + B4 SINE B4 41 292 0 3 1638 1224 68 19 112 chr5 138116937 138117105 -14420154 + B2_Mm2 SINE B2 2 161 -34 3 1638 834 106 0 0 chr5 138117105 138117228 -14420031 + (GAAA)n Simple_repeat Simple_repeat 4 126 0 3 1638 1224 68 19 112 chr5 138117228 138117247 -14420012 + B2_Mm2 SINE B2 162 168 -27 3 1638 1206 41 0 14 chr5 138117247 138117395 -14419864 + B1_Mus2 SINE Alu 2 147 0 3 1638 1224 68 19 112 chr5 138117395 138117420 -14419839 + B2_Mm2 SINE B2 169 195 0 3 1638 573 102 0 0 chr5 138117424 138117505 -14419754 + (GAAA)n Simple_repeat Simple_repeat 2 82 0 3 1638 275 0 0 28 chr5 138117505 138117541 -14419718 + (GGGAA)n Simple_repeat Simple_repeat 2 36 0 3 1638 573 102 0 0 chr5 138117541 138117547 -14419712 + (GAAA)n Simple_repeat Simple_repeat 3 8 0 3 1638 253 259 49 12 chr5 138117551 138117633 -14419626 - PB1D10 SINE Alu -27 90 6 3 1638 287 111 0 22 chr5 138117731 138117777 -14419482 + ID_B1 SINE B4 166 210 -14 3 1638 378 216 214 10 chr5 138117776 138117874 -14419385 + ID_B1 SINE B4 99 216 -8 3 1638 436 239 174 42 chr5 138117883 138118027 -14419232 + RSINE1 SINE B4 3 165 0 3 1638 327 259 0 58 chr5 138118103 138118189 -14419070 + ID4_ SINE ID 3 83 0 3 1638 194 0 39 0 chr5 138118306 138118332 -14418927 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1638 1107 29 0 21 chr5 138118332 138118462 -14418797 - B1_Mus1 SINE Alu -9 139 10 3 1638 1160 133 11 16 chr5 138118599 138118790 -14418469 + B2_Mm2 SINE B2 1 190 -5 3 1638 557 156 119 0 chr5 138118795 138118904 -14418355 + B1_Mur3 SINE Alu 27 148 -1 3 1638 494 254 109 0 chr5 138118987 138119125 -14418134 + RSINE1 SINE B4 4 156 -9 3 1638 761 216 123 32 chr5 138119452 138119639 -14417620 + ID_B1 SINE B4 21 224 0 3 1638 1044 230 10 14 chr5 138119646 138119853 -14417406 + B3 SINE B2 11 216 0 3 1638 699 159 18 0 chr5 138119867 138119980 -14417279 + B1_Mur4 SINE Alu 1 115 -35 3 1638 26 0 0 0 chr5 138119993 138120019 -14417240 + AT_rich Low_complexity Low_complexity 1 26 0 3 1638 1646 197 55 67 chr5 138120042 138120359 -14416900 + MTD LTR MaLR 23 342 -77 3 1638 1415 76 5 11 chr5 138120359 138120546 -14416713 + B2_Mm1a SINE B2 1 186 -7 3 1638 1646 197 55 67 chr5 138120546 138120630 -14416629 + MTD LTR MaLR 343 419 0 3 1638 651 244 0 0 chr5 138120984 138121119 -14416140 - RSINE1 SINE B4 -4 161 27 3 1638 1247 93 47 0 chr5 138121355 138121527 -14415732 + B2_Mm2 SINE B2 2 181 -14 3 1638 731 203 162 11 chr5 138121571 138121750 -14415509 - B3 SINE B2 -10 206 1 3 1638 315 227 234 64 chr5 138121768 138121909 -14415350 - RSINE1 SINE B4 0 165 1 3 1638 441 267 14 109 chr5 138122214 138122361 -14414898 + B1_Mur2 SINE Alu 1 133 -16 3 1638 532 262 38 44 chr5 138122398 138122553 -14414706 - RSINE1 SINE B4 -2 163 7 3 1638 313 299 0 0 chr5 138122556 138122633 -14414626 - ID_B1 SINE B4 0 224 148 3 1638 765 186 172 12 chr5 138122736 138122905 -14414354 - B3 SINE B2 -19 197 2 3 1638 396 225 0 12 chr5 138123080 138123161 -14414098 + ID4_ SINE ID 1 80 -3 3 1638 519 276 46 35 chr5 138123262 138123497 -14413762 - B4A SINE B4 0 292 2 3 1638 607 259 155 0 chr5 138123640 138123833 -14413426 + ID_B1 SINE B4 2 224 0 3 1638 202 380 0 0 chr5 138123980 138124051 -14413208 + MIR SINE MIR 81 151 -111 3 1638 180 0 0 0 chr5 138124115 138124135 -14413124 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 3 1638 533 244 0 73 chr5 138124372 138124509 -14412750 + ID_B1 SINE B4 98 224 0 3 1638 590 257 14 41 chr5 138124514 138124660 -14412599 + RSINE1 SINE B4 3 144 -21 3 1638 244 215 279 0 chr5 138125048 138125127 -14412132 - PB1D9 SINE Alu -17 103 3 3 1638 737 154 51 45 chr5 138125127 138125214 -14412045 - ID_B1 SINE B4 -133 91 4 3 1638 297 0 0 0 chr5 138126560 138126593 -14410666 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1638 651 235 84 7 chr5 138126712 138126866 -14410393 + ID_B1 SINE B4 3 168 -56 3 1638 481 171 85 0 chr5 138127145 138127227 -14410032 + B1_Mur2 SINE Alu 49 137 -12 3 1638 701 244 51 13 chr5 138127728 138127886 -14409373 + B3 SINE B2 1 164 -52 3 1638 252 0 0 0 chr5 138127910 138127938 -14409321 + (CA)n Simple_repeat Simple_repeat 2 29 0 4 1638 675 256 104 30 chr5 138127986 138128187 -14409072 + B4A SINE B4 18 233 -59 4 1638 625 188 94 0 chr5 138128194 138128311 -14408948 + B1_Mur2 SINE Alu 10 137 -12 4 1638 1021 219 53 10 chr5 138128375 138128582 -14408677 + B3 SINE B2 1 216 0 4 1638 1294 27 0 0 chr5 138128618 138128765 -14408494 + B1_Mus2 SINE Alu 1 147 0 4 1638 1243 93 32 11 chr5 138128769 138128927 -14408332 + B2_Mm1t SINE B2 3 160 -33 4 1638 194 0 39 0 chr5 138128927 138128953 -14408306 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4 1638 1243 93 32 11 chr5 138128953 138128979 -14408280 + B2_Mm1t SINE B2 161 191 -2 4 1638 342 0 0 0 chr5 138129046 138129084 -14408175 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1638 270 279 47 19 chr5 138129201 138129307 -14407952 - ERVL-E-int LTR ERVL -1075 4592 4484 4 1638 528 193 0 0 chr5 138129327 138129446 -14407813 + (TG)n Simple_repeat Simple_repeat 2 120 0 4 1638 311 183 13 90 chr5 138129447 138129461 -14407798 - HAL1-3A_ME LINE L1 -831 2027 2013 4 1638 1023 124 0 0 chr5 138129461 138129638 -14407621 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 1638 311 183 13 90 chr5 138129638 138129669 -14407590 - HAL1-3A_ME LINE L1 -846 2012 1985 4 1638 1095 102 0 0 chr5 138129669 138129846 -14407413 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 1638 311 183 13 90 chr5 138129846 138129857 -14407402 - HAL1-3A_ME LINE L1 -874 1984 1975 4 1638 946 273 57 14 chr5 138129857 138130136 -14407123 - B4 SINE B4 0 292 2 4 1638 311 183 13 90 chr5 138130136 138130155 -14407104 - HAL1-3A_ME LINE L1 -884 1974 1956 4 1638 703 190 64 21 chr5 138130990 138131130 -14406129 - B1_Mur2 SINE Alu -1 148 3 4 1638 501 248 41 34 chr5 138131136 138131282 -14405977 - B1F SINE Alu -2 147 1 4 1638 253 281 0 0 chr5 138131313 138131377 -14405882 + L1MEc LINE L1 189 252 -6148 4 1638 208 176 0 50 chr5 138131529 138131589 -14405670 + GA-rich Low_complexity Low_complexity 4 60 0 4 1638 399 290 0 24 chr5 138131603 138131730 -14405529 + GA-rich Low_complexity Low_complexity 4 127 0 4 1638 544 309 30 30 chr5 138131990 138132157 -14405102 + ID_B1 SINE B4 4 170 -54 4 1638 231 36 0 0 chr5 138132171 138132199 -14405060 + (AGGGGG)n Simple_repeat Simple_repeat 6 33 0 4 1638 262 297 73 105 chr5 138132352 138132385 -14404874 + PB1D7 SINE Alu 1 120 0 4 1638 509 198 0 0 chr5 138132385 138132476 -14404783 + ID_B1 SINE B4 132 222 -2 4 1638 1224 85 6 6 chr5 138132584 138132750 -14404509 + B2_Mm1t SINE B2 2 167 -26 4 1638 26 50 0 0 chr5 138132758 138132798 -14404461 + AT_rich Low_complexity Low_complexity 1 40 0 4 1638 364 124 18 5 chr5 138132838 138132902 -14404357 + B2_Mm2 SINE B2 47 109 -107 4 1638 31 58 0 0 chr5 138132906 138132958 -14404301 + AT_rich Low_complexity Low_complexity 1 52 0 4 1638 1233 66 18 0 chr5 138132973 138133140 -14404119 + B2_Mm1t SINE B2 20 189 -4 4 1638 462 296 35 6 chr5 138133147 138133320 -14403939 + L1M4 LINE L1 5616 5793 -381 4 1638 370 215 0 0 chr5 138133496 138133561 -14403698 - PB1D9 SINE Alu -53 67 3 4 1638 289 261 0 55 chr5 138133499 138133572 -14403687 - B4A SINE B4 -143 149 81 4 1638 1172 88 0 0 chr5 138133715 138133862 -14403397 - B1_Mus2 SINE Alu 0 147 1 4 1638 726 218 96 30 chr5 138133868 138134067 -14403192 - B3 SINE B2 0 216 5 4 1638 615 224 0 23 chr5 138134069 138134197 -14403062 - B3A SINE B2 -73 125 1 4 1638 866 104 44 7 chr5 138134302 138134437 -14402822 - B1_Mus2 SINE Alu -6 141 2 4 1638 340 331 0 8 chr5 138134438 138134450 -14402809 + MER2 DNA MER2_type 178 189 -156 4 1638 195 42 0 0 chr5 138134450 138134474 -14402785 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4 1638 340 331 0 8 chr5 138134474 138134583 -14402676 + MER2 DNA MER2_type 190 298 -47 4 1638 618 228 14 35 chr5 138134572 138134713 -14402546 - B1F2 SINE Alu 0 149 12 4 1638 471 291 0 62 chr5 138134713 138134732 -14402527 - ID_B1 SINE B4 0 223 74 4 1638 779 211 167 5 chr5 138134886 138135072 -14402187 + B3 SINE B2 1 216 0 4 1638 296 268 216 0 chr5 138135121 138135218 -14402041 - RSINE1 SINE B4 -2 163 46 4 1638 180 0 0 0 chr5 138135253 138135273 -14401986 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 4 1638 265 254 0 16 chr5 138135325 138135389 -14401870 + CT-rich Low_complexity Low_complexity 1 63 0 4 1638 605 237 76 0 chr5 138135390 138135521 -14401738 - ID_B1 SINE B4 -3 221 81 4 1638 335 204 0 20 chr5 138135540 138135640 -14401619 + CT-rich Low_complexity Low_complexity 1 98 0 4 1638 338 260 0 13 chr5 138135795 138135873 -14401386 - B4 SINE B4 -214 78 2 4 1638 679 262 0 0 chr5 138135893 138136034 -14401225 - B1_Mur3 SINE Alu -8 141 1 4 1638 242 240 0 20 chr5 138136409 138136460 -14400799 + MamRep1894 DNA hAT 2 51 -72 4 1638 635 202 0 0 chr5 138136530 138136639 -14400620 - B1_Mur4 SINE Alu 0 150 42 4 1638 226 305 32 90 chr5 138136647 138136682 -14400577 - MT2B2 LTR ERVL -269 315 286 4 1638 297 0 0 0 chr5 138136682 138136715 -14400544 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1638 226 305 32 90 chr5 138136715 138136834 -14400425 - MT2B2 LTR ERVL -299 285 171 4 1638 900 226 75 0 chr5 138136719 138136905 -14400354 - ID_B1 SINE B4 -22 202 3 4 1638 467 307 26 32 chr5 138137125 138137280 -14399979 + RSINE1 SINE B4 12 165 0 4 1638 339 308 142 22 chr5 138137705 138137937 -14399322 + B4 SINE B4 1 260 -32 4 1638 687 257 21 114 chr5 138137976 138138169 -14399090 + B3A SINE B2 1 175 -23 4 1638 318 256 120 22 chr5 138138583 138138675 -14398584 + ID_B1 SINE B4 82 182 -42 4 1638 215 329 177 0 chr5 138138682 138138761 -14398498 - ID_B1 SINE B4 -128 96 4 4 1638 638 273 7 0 chr5 138138815 138138954 -14398305 - RSINE1 SINE B4 -21 144 5 4 1638 958 115 0 14 chr5 138139019 138139160 -14398099 - B1_Mur4 SINE Alu -2 148 10 4 1638 365 245 0 131 chr5 138139064 138139186 -14398073 - MT2B LTR ERVL -344 257 152 4 1638 687 273 0 36 chr5 138139192 138139359 -14397900 - RSINE1 SINE B4 0 165 5 4 1638 214 289 0 73 chr5 138139390 138139472 -14397787 + B4 SINE B4 6 81 -211 4 1638 621 303 42 60 chr5 138139547 138139831 -14397428 + B4A SINE B4 2 280 -12 4 1638 220 274 0 0 chr5 138139851 138139889 -14397370 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 4 1638 1242 35 0 0 chr5 138139889 138140030 -14397229 - B1_Mm SINE Alu -6 141 1 4 1638 220 274 0 0 chr5 138140030 138140042 -14397217 + (TATATG)n Simple_repeat Simple_repeat 3 14 0 4 1638 364 234 83 21 chr5 138140073 138140169 -14397090 - ORR1E LTR MaLR -5 354 253 4 1638 503 283 47 35 chr5 138140263 138140435 -14396824 + B3A SINE B2 35 208 -8 4 1638 589 286 47 12 chr5 138140440 138140610 -14396649 - B3A SINE B2 -22 176 1 4 1638 355 221 51 13 chr5 138140695 138140773 -14396486 + ID2 SINE ID 1 81 -2 4 1638 315 365 203 0 chr5 138140773 138140965 -14396294 + HAL1-3A_ME LINE L1 1981 2211 -647 4 1638 225 94 0 0 chr5 138141505 138141537 -14395722 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 1638 916 122 7 14 chr5 138141538 138141679 -14395580 - B1_Mur3 SINE Alu -2 147 8 4 1638 298 294 83 92 chr5 138141664 138141784 -14395475 - RSINE1 SINE B4 -11 154 36 4 1638 490 228 76 57 chr5 138142067 138142225 -14395034 + RSINE1 SINE B4 2 162 -3 4 1638 761 294 0 53 chr5 138142275 138142501 -14394758 + B3 SINE B2 1 214 -2 4 1638 237 314 0 0 chr5 138142554 138142624 -14394635 - ID4 SINE ID -13 70 1 4 1638 1451 75 4 4 chr5 138142624 138142934 -14394325 - ZP3AR Satellite Satellite -11 310 1 4 1638 356 0 23 0 chr5 138142986 138143030 -14394229 + (TA)n Simple_repeat Simple_repeat 2 46 0 4 1638 321 330 57 0 chr5 138143270 138143358 -14393901 - L1MC4a LINE L1 -1994 5888 5796 4 1638 928 155 0 0 chr5 138143455 138143597 -14393662 - B1_Mur4 SINE Alu -8 142 1 4 1638 216 303 20 119 chr5 138143622 138143638 -14393621 - PB1D7 SINE Alu 0 120 30 4 1638 365 253 0 24 chr5 138143638 138143723 -14393536 - ID_B1 SINE B4 -31 193 111 4 1638 189 214 0 0 chr5 138143764 138143806 -14393453 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 4 1638 581 101 2 8 chr5 138143835 138143930 -14393329 - B3 SINE B2 -106 92 1 4 1638 948 164 80 91 chr5 138143930 138144105 -14393154 - B3A SINE B2 -22 173 1 4 1638 1275 196 172 7 chr5 138144471 138144779 -14392480 - MTE2b LTR MaLR -20 359 1 4 1638 1051 247 36 0 chr5 138144993 138145214 -14392045 + B4A SINE B4 1 229 -63 4 1638 611 142 18 28 chr5 138145214 138145304 -14391955 + B1_Mur4 SINE Alu 1 89 -61 4 1638 2995 91 31 37 chr5 138145304 138145762 -14391497 - LTRIS_Mus LTR ERV1 0 587 133 4 1638 758 281 57 5 chr5 138146023 138146234 -14391025 - ID_B1 SINE B4 -1 223 2 4 1638 1216 113 54 5 chr5 138146289 138146475 -14390784 + B2_Mm2 SINE B2 1 195 0 4 1638 521 270 82 0 chr5 138146620 138146779 -14390480 - MTE2b LTR MaLR 0 379 208 4 1638 218 245 20 0 chr5 138146906 138146955 -14390304 - RSINE1 SINE B4 -29 136 87 4 1638 776 120 63 8 chr5 138146958 138147084 -14390175 - B1_Mur3 SINE Alu 0 149 17 4 1638 252 265 0 68 chr5 138147088 138147161 -14390098 - RSINE1 SINE B4 -96 69 2 4 1638 693 157 83 95 chr5 138147161 138147323 -14389936 + URR1A DNA MER1_type 66 225 -1 4 1638 612 268 19 31 chr5 138147323 138147468 -14389791 - MTE2b LTR MaLR -197 182 40 4 1638 276 294 32 21 chr5 138147654 138147748 -14389511 + Lx8 LINE L1 7375 7469 -4 4 1638 695 167 127 79 chr5 138147792 138147981 -14389278 + B3A SINE B2 1 198 0 4 1638 225 314 0 0 chr5 138147982 138148033 -14389226 + B4A SINE B4 219 269 -23 4 1638 192 40 0 0 chr5 138148033 138148058 -14389201 + (CA)n Simple_repeat Simple_repeat 2 26 0 4 1638 962 286 54 51 chr5 138148078 138148450 -14388809 + MLT1F LTR MaLR 168 540 -8 4 1638 222 263 0 95 chr5 138148553 138148616 -14388643 - ID4_ SINE ID -26 57 1 4 1638 327 153 0 92 chr5 138148567 138148632 -14388627 - ZP3AR Satellite Satellite -127 85 27 4 1638 273 260 0 0 chr5 138148677 138148754 -14388505 + GA-rich Low_complexity Low_complexity 2 78 0 5 1638 1695 53 0 5 chr5 138148774 138149259 -14388000 + ZP3AR Satellite Satellite 1 482 0 5 1638 334 234 13 13 chr5 138149215 138149293 -14387966 + BC1_Mm scRNA scRNA 1 78 -74 5 204 481 234 152 47 chr5 138149834 138149971 -14387288 + B4A SINE B4 1 154 -138 5 1639 180 0 0 0 chr5 138149971 138149991 -14387268 + (G)n Simple_repeat Simple_repeat 1 20 0 5 1639 481 234 152 47 chr5 138149991 138150064 -14387195 + B4A SINE B4 155 233 -59 5 1639 672 211 0 8 chr5 138150088 138150217 -14387042 + B1_Mur2 SINE Alu 1 128 -21 5 1639 224 262 0 24 chr5 138150223 138150281 -14386978 + T-rich Low_complexity Low_complexity 23 80 0 5 1639 573 55 0 0 chr5 138150281 138150354 -14386905 + (TC)n Simple_repeat Simple_repeat 1 73 0 5 1639 1147 59 0 0 chr5 138150354 138150489 -14386770 - B1_Mus2 SINE Alu -11 136 2 5 1639 224 262 0 24 chr5 138150489 138150511 -14386748 + T-rich Low_complexity Low_complexity 2 22 0 5 1639 236 309 51 41 chr5 138150527 138150625 -14386634 + B1F SINE Alu 51 149 0 5 1639 319 267 97 32 chr5 138150657 138150781 -14386478 + B1F SINE Alu 18 149 0 5 1639 598 330 18 36 chr5 138150809 138151029 -14386230 + ID_B1 SINE B4 1 216 -8 5 1639 214 194 0 0 chr5 138151140 138151176 -14386083 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1639 315 0 0 0 chr5 138151278 138151313 -14385946 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5 1639 596 221 98 39 chr5 138151326 138151529 -14385730 - B3 SINE B2 0 216 2 5 1639 195 42 0 0 chr5 138151537 138151561 -14385698 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 5 1639 1740 21 0 0 chr5 138151569 138151761 -14385498 + B2_Mm1t SINE B2 2 193 0 5 1639 800 215 15 102 chr5 138151767 138151964 -14385295 + B3 SINE B2 27 206 -10 5 1639 644 248 0 0 chr5 138152028 138152157 -14385102 + B1_Mur1 SINE Alu 7 135 -14 5 1639 1011 97 0 0 chr5 138152170 138152315 -14384944 + (GA)n Simple_repeat Simple_repeat 2 146 0 5 1639 564 276 30 66 chr5 138152315 138152513 -14384746 + B4 SINE B4 29 219 -73 5 1639 861 135 0 21 chr5 138152379 138152523 -14384736 + B1_Mur4 SINE Alu 10 150 0 5 1639 390 337 0 0 chr5 138152551 138152652 -14384607 + B4 SINE B4 87 187 -105 5 1639 230 250 44 0 chr5 138152808 138152876 -14384383 + HAL1 LINE L1 2055 2125 -382 5 1639 249 33 0 0 chr5 138152887 138152917 -14384342 + (TAA)n Simple_repeat Simple_repeat 3 32 0 5 1639 288 105 0 0 chr5 138152940 138152978 -14384281 + PB1D7 SINE Alu 70 107 -13 5 1639 229 281 56 11 chr5 138153002 138153092 -14384167 + L1M1 LINE L1 5782 5875 -425 5 1639 231 260 12 83 chr5 138153095 138153179 -14384080 + B3A SINE B2 7 84 -114 5 1639 384 59 0 0 chr5 138153241 138153292 -14383967 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1639 393 209 64 85 chr5 138153372 138153466 -14383793 - ID_B1 SINE B4 0 224 133 5 1639 220 224 0 20 chr5 138153423 138153473 -14383786 - PB1D10 SINE Alu -23 94 46 5 1639 841 141 22 0 chr5 138153547 138153682 -14383577 + B1_Mus2 SINE Alu 9 146 -1 5 1639 1532 47 0 40 chr5 138153685 138153885 -14383374 + B2_Mm1a SINE B2 2 193 0 5 1639 408 201 92 40 chr5 138153891 138154006 -14383253 - B1F2 SINE Alu -21 128 7 5 1639 320 238 24 24 chr5 138153968 138154050 -14383209 - ID4 SINE ID 0 83 2 5 1639 453 255 108 0 chr5 138154050 138154152 -14383107 - B1F1 SINE Alu -7 113 1 5 1639 567 252 15 22 chr5 138154429 138154563 -14382696 - RSINE1 SINE B4 -31 134 2 5 1639 667 207 0 80 chr5 138155140 138155303 -14381956 - RSINE1 SINE B4 -13 152 3 5 1639 385 277 44 18 chr5 138155445 138155559 -14381700 + PB1D10 SINE Alu 1 117 0 5 1639 300 211 102 4 chr5 138155572 138155652 -14381607 + B1_Mus1 SINE Alu 2 105 -44 5 1639 570 246 96 82 chr5 138155726 138155934 -14381325 - B4A SINE B4 0 292 82 5 1639 197 0 0 67 chr5 138155934 138155964 -14381295 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 5 1639 1124 68 0 33 chr5 138155967 138156118 -14381141 - B1_Mus2 SINE Alu 0 147 2 5 1639 230 250 0 117 chr5 138156118 138156195 -14381064 - B4A SINE B4 -196 96 29 5 1639 1155 55 176 6 chr5 138156196 138156361 -14380898 - B2_Mm2 SINE B2 -1 194 2 5 1639 977 175 6 12 chr5 138156541 138156709 -14380550 - ZP3AR Satellite Satellite -4 208 42 5 1639 300 324 117 34 chr5 138156857 138157036 -14380223 + MLT1J2 LTR MaLR 252 445 -3 5 1639 540 248 13 33 chr5 138157323 138157473 -14379786 - BC1_Mm scRNA scRNA -5 147 1 5 1639 303 191 0 0 chr5 138157502 138157565 -14379694 + G-rich Low_complexity Low_complexity 5 67 0 5 1639 455 267 46 46 chr5 138157625 138157778 -14379481 + RSINE1 SINE B4 11 163 -2 5 1639 255 125 0 0 chr5 138157778 138157818 -14379441 + (CAA)n Simple_repeat Simple_repeat 3 42 0 5 1639 215 231 0 0 chr5 138157839 138157878 -14379381 + (CAA)n Simple_repeat Simple_repeat 3 41 0 5 1639 685 156 98 0 chr5 138157891 138158013 -14379246 + B1_Mur1 SINE Alu 1 134 -15 5 1639 449 194 112 146 chr5 138158151 138158356 -14378903 - B3 SINE B2 0 198 1 5 1639 582 111 0 0 chr5 138158848 138158929 -14378330 + B3A SINE B2 2 82 -116 5 1639 612 217 9 0 chr5 138158922 138159028 -14378231 + B1_Mur1 SINE Alu 30 136 -13 5 1639 540 45 0 0 chr5 138159030 138159097 -14378162 + (AAATG)n Simple_repeat Simple_repeat 4 70 0 5 1639 934 216 55 0 chr5 138159103 138159302 -14377957 + B3 SINE B2 1 210 -6 5 1639 603 241 30 22 chr5 138159610 138159747 -14377512 + B3A SINE B2 1 149 -46 5 1639 339 25 0 0 chr5 138159747 138159787 -14377472 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1639 390 298 153 12 chr5 138159787 138159819 -14377440 + B2_Mm2 SINE B2 150 193 -2 5 1639 502 250 63 21 chr5 138159937 138160080 -14377179 + B1F1 SINE Alu 1 149 0 5 1639 628 230 32 0 chr5 138160844 138160970 -14376289 + ID_B1 SINE B4 82 211 -13 5 1639 1918 102 31 22 chr5 138162209 138162528 -14374731 + RLTRETN_Mm LTR ERVK 1 322 0 5 1639 968 0 0 9 chr5 138163121 138163236 -14374023 - MT2_Mm LTR ERVL -83 410 297 5 1639 1422 39 6 17 chr5 138163737 138163918 -14373341 - B2_Mm1t SINE B2 0 193 15 5 1639 357 308 15 98 chr5 138164145 138164278 -14372981 + B4A SINE B4 54 175 -117 5 1639 223 250 39 176 chr5 138164192 138164294 -14372965 + PB1D7 SINE Alu 18 105 -15 5 1639 322 231 9 44 chr5 138164405 138164518 -14372741 + (CATA)n Simple_repeat Simple_repeat 3 111 0 5 1639 740 158 0 0 chr5 138164525 138164639 -14372620 - B1_Mus1 SINE Alu 0 148 35 5 1639 311 346 76 26 chr5 138164692 138164880 -14372379 + B4 SINE B4 1 192 -32 5 1639 424 250 82 22 chr5 138164948 138165083 -14372176 + RSINE1 SINE B4 2 144 -21 5 1639 955 248 20 5 chr5 138165342 138165545 -14371714 + ID_B1 SINE B4 14 219 -5 5 1639 1110 96 0 0 chr5 138166105 138166251 -14371008 + B1_Mus2 SINE Alu 1 146 -1 5 1639 403 255 19 10 chr5 138166256 138166359 -14370900 - U6 snRNA snRNA 0 107 4 5 1639 1252 34 7 0 chr5 138166376 138166522 -14370737 - B1_Mus1 SINE Alu 0 148 2 5 1639 524 265 50 29 chr5 138166527 138166667 -14370592 - B1F SINE Alu -6 143 1 5 1639 249 393 52 23 chr5 138166681 138166853 -14370406 - B3A SINE B2 -9 189 13 5 1639 558 327 24 36 chr5 138166699 138166864 -14370395 - RSINE1 SINE B4 0 165 3 5 1639 204 226 19 0 chr5 138166874 138166902 -14370357 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 5 1639 401 103 15 0 chr5 138166902 138166970 -14370289 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 5 1639 707 106 54 0 chr5 138166970 138167145 -14370114 + (TCTA)n Simple_repeat Simple_repeat 1 184 0 5 1639 466 184 23 0 chr5 138167146 138167233 -14370026 - PB1D9 SINE Alu -29 91 3 5 1639 695 240 22 28 chr5 138167233 138167408 -14369851 + B3A SINE B2 22 195 -3 5 1639 1222 68 0 0 chr5 138167409 138167556 -14369703 + B1_Mus1 SINE Alu 2 148 0 5 1639 231 338 0 0 chr5 138167638 138167712 -14369547 + ID_B1 SINE B4 130 203 -21 5 1639 432 260 24 8 chr5 138167913 138168037 -14369222 - B1F SINE Alu -1 148 23 5 1639 805 248 9 67 chr5 138168081 138168306 -14368953 - B4 SINE B4 0 292 81 5 1639 1162 56 14 0 chr5 138168328 138168472 -14368787 - B1_Mus2 SINE Alu 0 147 2 5 1639 389 282 23 39 chr5 138168683 138168704 -14368555 - B1_Mur3 SINE Alu -2 147 21 5 1639 600 167 65 0 chr5 138168704 138168812 -14368447 - ID_B1 SINE B4 -8 216 102 5 1639 543 287 12 43 chr5 138169201 138169365 -14367894 - RSINE1 SINE B4 -2 163 5 5 1639 647 193 172 54 chr5 138169393 138169579 -14367680 - B3 SINE B2 -5 211 4 5 1639 1331 81 6 0 chr5 138169734 138169752 -14367507 - B2_Mm2 SINE B2 -18 177 159 5 1639 234 0 0 0 chr5 138169752 138169778 -14367481 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5 1639 1331 81 6 0 chr5 138169778 138169933 -14367326 - B2_Mm2 SINE B2 -37 158 4 5 1639 1024 51 71 14 chr5 138169965 138170105 -14367154 - B1_Mus1 SINE Alu 0 148 1 5 1639 218 262 115 0 chr5 138170179 138170240 -14367019 - ID SINE ID -151 73 6 5 1639 535 335 12 0 chr5 138170312 138170473 -14366786 - RSINE1 SINE B4 0 165 3 5 1639 386 196 26 9 chr5 138170488 138170601 -14366658 + (TA)n Simple_repeat Simple_repeat 1 115 0 5 1639 964 196 0 43 chr5 138170601 138170788 -14366471 - B3 SINE B2 -34 182 4 5 1639 365 254 132 44 chr5 138170788 138170924 -14366335 - ID_B1 SINE B4 -1 223 76 5 1639 552 210 136 8 chr5 138171114 138171239 -14366020 - B1_Mm SINE Alu 0 147 7 5 1639 325 376 9 0 chr5 138171399 138171508 -14365751 - ZP3AR Satellite Satellite -58 154 45 5 1639 189 0 0 0 chr5 138172071 138172092 -14365167 + (TGGGGG)n Simple_repeat Simple_repeat 3 23 0 6 1639 31 0 0 0 chr5 138172175 138172206 -14365053 + AT_rich Low_complexity Low_complexity 1 31 0 6 1639 870 87 158 0 chr5 138173374 138173501 -14363758 + B1_Mus1 SINE Alu 2 148 0 6 1639 180 0 26 79 chr5 138173503 138173541 -14363718 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 6 1639 906 215 15 15 chr5 138173668 138173866 -14363393 - B3A SINE B2 0 198 1 6 1639 307 215 46 0 chr5 138173886 138173951 -14363308 - ID_B1 SINE B4 -62 162 95 6 1639 597 94 0 0 chr5 138174013 138174098 -14363161 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 6 1639 1363 62 2 18 chr5 138174541 138174779 -14362480 + ZP3AR Satellite Satellite 1 234 -1 6 1639 244 236 27 14 chr5 138174746 138174819 -14362440 + ID SINE ID 1 74 -150 6 1639 318 132 0 0 chr5 138175294 138175347 -14361912 + (CA)n Simple_repeat Simple_repeat 2 54 0 6 1639 214 204 0 0 chr5 138177637 138177681 -14359578 - ID4 SINE ID -39 44 1 6 1639 1460 68 3 8 chr5 138177643 138177995 -14359264 - ZP3AR Satellite Satellite -26 350 1 6 1639 1123 77 7 0 chr5 138177999 138178142 -14359117 + B1_Mus2 SINE Alu 4 147 0 6 1639 375 141 0 0 chr5 138178391 138178455 -14358804 + (TTCC)n Simple_repeat Simple_repeat 4 67 0 6 1639 695 229 7 7 chr5 138178456 138178601 -14358658 - B1_Mur2 SINE Alu 0 149 5 6 1639 190 110 11 99 chr5 138178605 138178696 -14358563 + T-rich Low_complexity Low_complexity 1 83 0 6 1639 216 0 0 0 chr5 138178811 138178835 -14358424 + (T)n Simple_repeat Simple_repeat 1 24 0 6 1639 372 43 0 0 chr5 138179622 138179668 -14357591 + (TG)n Simple_repeat Simple_repeat 2 47 0 6 1639 379 52 0 33 chr5 138179893 138179953 -14357306 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 1639 321 26 0 0 chr5 138180365 138180403 -14356856 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1639 227 305 23 0 chr5 138181363 138181494 -14355765 + (CA)n Simple_repeat Simple_repeat 2 135 0 6 1639 205 240 0 0 chr5 138182392 138182442 -14354817 + C-rich Low_complexity Low_complexity 4 53 0 6 1639 180 0 0 0 chr5 138183265 138183285 -14353974 + (G)n Simple_repeat Simple_repeat 1 20 0 6 1639 238 291 63 0 chr5 138183287 138183366 -14353893 + MLT1E2 LTR MaLR 14 97 -530 6 1639 456 229 27 9 chr5 138183457 138183567 -14353692 + ID_B1 SINE B4 93 204 -20 6 1639 743 159 8 0 chr5 138183754 138183880 -14353379 - B1_Mus2 SINE Alu -7 140 14 6 1639 1130 70 35 0 chr5 138183880 138184022 -14353237 + B1_Mus2 SINE Alu 1 147 0 6 1639 191 81 0 51 chr5 138184049 138184088 -14353171 + (TCTCTG)n Simple_repeat Simple_repeat 4 40 0 6 1639 646 236 76 76 chr5 138184124 138184321 -14352938 + B3A SINE B2 1 197 -1 6 1639 466 153 34 4 chr5 138184327 138184424 -14352835 + B1_Mus2 SINE Alu 1 96 -21 6 1639 266 293 87 48 chr5 138184509 138184613 -14352646 + PB1D10 SINE Alu 4 111 -6 6 1639 1109 97 0 0 chr5 138184625 138184770 -14352489 + B1_Mus2 SINE Alu 3 147 0 6 1639 223 231 0 30 chr5 138184770 138184837 -14352422 + A-rich Low_complexity Low_complexity 4 68 0 6 1639 236 292 14 0 chr5 138184986 138185058 -14352201 - ID_B1 SINE B4 -1 223 151 6 1639 341 233 68 14 chr5 138185066 138185140 -14352119 - ID4_ SINE ID -4 79 2 6 1639 180 0 0 0 chr5 138185172 138185192 -14352067 + (TCTG)n Simple_repeat Simple_repeat 4 23 0 6 1639 356 250 26 96 chr5 138185197 138185312 -14351947 - PB1D10 SINE Alu -10 107 1 6 1639 204 40 0 0 chr5 138185352 138185377 -14351882 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1639 1287 14 7 0 chr5 138185377 138185523 -14351736 - B1_Mus2 SINE Alu 0 147 1 6 1639 718 271 190 4 chr5 138185964 138186201 -14351058 + B4A SINE B4 2 282 -10 6 1639 519 269 14 29 chr5 138186358 138186496 -14350763 + RSINE1 SINE B4 1 136 -29 6 1639 324 0 0 0 chr5 138186505 138186541 -14350718 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1639 267 291 77 23 chr5 138186558 138186688 -14350571 + L1MC5 LINE L1 7777 7913 -48 6 1639 243 133 0 0 chr5 138187000 138187045 -14350214 + (CAG)n Simple_repeat Simple_repeat 3 47 0 6 1639 222 67 21 43 chr5 138187117 138187164 -14350095 + (GGA)n Simple_repeat Simple_repeat 1 46 0 6 1639 207 0 0 0 chr5 138187565 138187588 -14349671 + (GA)n Simple_repeat Simple_repeat 2 24 0 6 1639 588 53 0 0 chr5 138189300 138189376 -14347883 + (TTCC)n Simple_repeat Simple_repeat 3 78 0 6 1639 501 17 0 0 chr5 138189874 138189932 -14347327 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1639 26 0 0 0 chr5 138190176 138190202 -14347057 + AT_rich Low_complexity Low_complexity 1 26 0 6 1639 729 201 23 70 chr5 138190311 138190482 -14346777 - RSINE1 SINE B4 0 165 3 6 1639 1595 27 11 16 chr5 138191173 138191362 -14345897 + B2_Mm1a SINE B2 1 188 -5 6 1639 1744 21 0 0 chr5 138191387 138191580 -14345679 + B2_Mm1a SINE B2 1 193 0 6 1639 261 261 0 0 chr5 138191598 138191663 -14345596 + PB1D10 SINE Alu 40 104 -13 6 1639 258 294 41 52 chr5 138191663 138191695 -14345564 + ID_B1 SINE B4 121 216 -8 6 1639 1175 42 20 20 chr5 138191702 138191849 -14345410 + B1_Mus2 SINE Alu 1 147 0 6 1639 927 269 4 40 chr5 138191875 138192103 -14345156 + ID_B1 SINE B4 1 220 -4 6 1639 495 157 0 0 chr5 138192281 138192370 -14344889 + (CA)n Simple_repeat Simple_repeat 1 89 0 6 1639 348 295 0 0 chr5 138192927 138193005 -14344254 + ID SINE ID 4 81 -143 6 1639 347 299 10 30 chr5 138193232 138193332 -14343927 + PB1D10 SINE Alu 14 111 -6 6 1639 326 294 0 0 chr5 138193341 138193426 -14343833 + B1F SINE Alu 1 85 -64 6 1639 629 168 53 0 chr5 138193426 138193539 -14343720 + B1_Mm SINE Alu 1 119 -28 6 1639 612 209 57 32 chr5 138193657 138193815 -14343444 + ID_B1 SINE B4 1 162 -62 6 1639 690 88 281 0 chr5 138193823 138193937 -14343322 + B1_Mus1 SINE Alu 3 148 0 6 1639 249 151 0 0 chr5 138193938 138193991 -14343268 + A-rich Low_complexity Low_complexity 1 53 0 6 1639 369 250 8 59 chr5 138195347 138195466 -14341793 - PB1D10 SINE Alu 0 117 5 6 1639 363 23 0 0 chr5 138195566 138195610 -14341649 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1639 776 323 8 30 chr5 138195627 138195895 -14341364 - B4 SINE B4 -30 262 1 6 1639 218 200 23 23 chr5 138195931 138195975 -14341284 + (TATG)n Simple_repeat Simple_repeat 3 46 0 6 1639 1172 79 6 0 chr5 138195975 138196153 -14341106 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1639 218 200 23 23 chr5 138196153 138196195 -14341064 + (TATG)n Simple_repeat Simple_repeat 1 42 0 6 1639 903 142 4 12 chr5 138196184 138196444 -14340815 + (TG)n Simple_repeat Simple_repeat 1 257 0 6 1639 423 285 35 71 chr5 138196444 138196614 -14340645 - RSINE1 SINE B4 0 165 2 6 1639 239 250 67 0 chr5 138197127 138197187 -14340072 - MER91C DNA Tip100 0 140 77 6 1639 258 116 0 0 chr5 138197739 138197782 -14339477 + (TCCC)n Simple_repeat Simple_repeat 1 43 0 6 1639 542 163 28 0 chr5 138197794 138197935 -14339324 + (TG)n Simple_repeat Simple_repeat 1 145 0 6 1639 464 326 34 0 chr5 138197945 138198092 -14339167 - RSINE1 SINE B4 -6 159 8 6 1639 31 0 0 0 chr5 138200931 138200962 -14336297 + AT_rich Low_complexity Low_complexity 1 31 0 6 1639 471 18 0 0 chr5 138201050 138201106 -14336153 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1639 403 277 134 0 chr5 138201699 138201811 -14335448 - ID_B1 SINE B4 -10 214 88 6 1639 277 235 103 0 chr5 138201866 138201934 -14335325 - B4 SINE B4 -18 274 200 6 1639 305 231 0 49 chr5 138202120 138202202 -14335057 - ID_B1 SINE B4 -17 207 130 6 1639 239 257 40 0 chr5 138202206 138202280 -14334979 - B4A SINE B4 -1 291 215 6 1639 395 171 0 2 chr5 138202281 138202372 -14334887 - B1_Mur4 SINE Alu -1 149 57 6 1639 603 265 49 12 chr5 138202373 138202537 -14334722 - B4A SINE B4 -76 216 47 6 1639 635 203 24 8 chr5 138202538 138202662 -14334597 - B3 SINE B2 -90 126 1 6 1639 335 330 18 9 chr5 138203474 138203587 -14333672 - RSINE1 SINE B4 -50 115 2 6 1639 351 211 0 0 chr5 138204019 138204090 -14333169 - ID_B1 SINE B4 0 224 154 6 1639 679 187 42 21 chr5 138204146 138204288 -14332971 + B1_Mur4 SINE Alu 1 145 -5 6 1639 626 247 78 16 chr5 138204293 138204486 -14332773 - B3 SINE B2 -11 205 1 6 1639 1096 78 55 96 chr5 138204520 138204678 -14332581 - B2_Mm2 SINE B2 -3 192 41 6 1639 1283 7 0 0 chr5 138204678 138204826 -14332433 - L1Md_A LINE L1 0 6582 6435 6 1639 1570 49 0 0 chr5 138204826 138205009 -14332250 - B2_Mm1a SINE B2 -10 183 1 6 1639 1096 78 55 96 chr5 138205009 138205048 -14332211 - B2_Mm2 SINE B2 -155 40 3 6 1639 763 178 37 0 chr5 138205055 138205190 -14332069 - B1F2 SINE Alu -5 144 5 6 1639 180 0 0 0 chr5 138205218 138205238 -14332021 + (A)n Simple_repeat Simple_repeat 1 20 0 6 1639 241 293 26 13 chr5 138205253 138205329 -14331930 - RSINE1 SINE B4 0 165 89 6 1639 670 218 144 31 chr5 138205335 138205529 -14331730 - B3 SINE B2 0 216 1 6 1639 1145 83 21 0 chr5 138205679 138205824 -14331435 - B1_Mus1 SINE Alu 0 148 1 6 1639 391 256 0 82 chr5 138205830 138205928 -14331331 - B4A SINE B4 -201 91 2 6 1639 657 271 34 34 chr5 138206568 138206774 -14330485 - ID_B1 SINE B4 0 224 19 6 1639 335 297 0 0 chr5 138206879 138206953 -14330306 + ID4_ SINE ID 3 76 -7 6 1639 821 178 60 80 chr5 138207178 138207209 -14330050 + B3 SINE B2 9 39 -177 6 1639 1369 80 17 0 chr5 138207209 138207384 -14329875 + B2_Mm2 SINE B2 1 178 -17 7 1639 515 16 16 0 chr5 138207386 138207450 -14329809 + (GAAAA)n Simple_repeat Simple_repeat 2 66 0 7 1639 821 178 60 80 chr5 138207450 138207616 -14329643 + B3 SINE B2 40 205 -11 6 1639 496 218 94 24 chr5 138207626 138207753 -14329506 + B3A SINE B2 25 160 -38 7 1639 552 172 224 0 chr5 138207845 138207961 -14329298 - B1_Mus2 SINE Alu -5 142 1 7 1639 1196 74 0 0 chr5 138208018 138208166 -14329093 - B1_Mus1 SINE Alu 0 148 1 7 1639 507 215 99 8 chr5 138208183 138208314 -14328945 - B1_Mur1 SINE Alu 0 149 7 7 1639 309 203 14 0 chr5 138208320 138208389 -14328870 - B4A SINE B4 -73 219 150 7 1639 830 177 0 20 chr5 138208517 138208667 -14328592 + B1_Mur4 SINE Alu 2 148 -2 7 1639 195 42 0 0 chr5 138208678 138208702 -14328557 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7 1639 519 222 71 43 chr5 138208723 138208864 -14328395 + B1F2 SINE Alu 5 149 0 7 1639 253 204 74 0 chr5 138208943 138208997 -14328262 + PB1D10 SINE Alu 19 76 -41 7 1639 188 306 32 16 chr5 138209057 138209120 -14328139 - L2b LINE L2 -222 3153 3090 7 1639 207 0 0 0 chr5 138209621 138209644 -14327615 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1639 229 26 26 26 chr5 138209951 138209990 -14327269 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 7 1639 1045 45 38 0 chr5 138209990 138210122 -14327137 - B1_Mus2 SINE Alu -10 137 1 7 1639 183 100 0 0 chr5 138210198 138210228 -14327031 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1639 554 244 39 0 chr5 138210238 138210365 -14326894 - B3A SINE B2 -65 133 2 7 1639 228 250 0 0 chr5 138210369 138210425 -14326834 - ID_B1 SINE B4 -2 222 167 7 1639 416 313 59 7 chr5 138210528 138210663 -14326596 - RSINE1 SINE B4 0 165 24 7 1639 1063 51 0 0 chr5 138210672 138210809 -14326450 - B1_Mus1 SINE Alu -1 147 11 7 1639 433 243 34 131 chr5 138210809 138210838 -14326421 - B4A SINE B4 -59 200 76 7 1639 231 328 25 74 chr5 138210815 138210937 -14326322 - B1F SINE Alu -10 139 24 7 1639 363 73 0 0 chr5 138211120 138211175 -14326084 + (TG)n Simple_repeat Simple_repeat 1 55 0 7 1639 547 271 53 110 chr5 138211564 138211792 -14325467 + ID_B1 SINE B4 3 217 -7 7 1639 627 259 14 36 chr5 138211802 138211942 -14325317 + RSINE1 SINE B4 3 139 -26 7 1639 486 0 0 0 chr5 138211957 138212011 -14325248 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1639 642 150 181 0 chr5 138212194 138212327 -14324932 + URR1B DNA MER1_type 1 157 -68 7 1639 408 129 0 0 chr5 138212352 138212414 -14324845 - PB1D9 SINE Alu -52 68 7 7 1639 485 223 38 19 chr5 138212359 138212464 -14324795 - ID_B1 SINE B4 -82 142 36 7 1639 1431 29 103 0 chr5 138212594 138212612 -14324647 - B2_Mm1a SINE B2 0 193 176 7 1639 207 0 0 0 chr5 138212612 138212635 -14324624 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7 1639 1431 29 103 0 chr5 138212635 138212791 -14324468 - B2_Mm1a SINE B2 -18 175 2 7 1639 228 208 62 0 chr5 138212844 138212892 -14324367 + RMER30 DNA MER1_type 1 51 -151 7 1639 628 231 23 16 chr5 138213045 138213196 -14324063 + B1F SINE Alu 3 148 -1 7 1639 958 224 69 5 chr5 138213200 138213402 -14323857 + B3 SINE B2 2 216 0 7 1639 498 324 21 31 chr5 138213688 138213879 -14323380 + B4 SINE B4 81 269 -23 7 1639 621 38 0 0 chr5 138213879 138213959 -14323300 + (CA)n Simple_repeat Simple_repeat 2 81 0 7 1639 284 308 0 71 chr5 138214004 138214102 -14323157 + PB1D10 SINE Alu 5 95 -22 7 1639 561 256 15 58 chr5 138214211 138214348 -14322911 + RSINE1 SINE B4 3 133 -32 7 1639 378 0 0 0 chr5 138214352 138214394 -14322865 + (TC)n Simple_repeat Simple_repeat 1 42 0 7 1639 273 29 0 0 chr5 138214394 138214427 -14322832 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1639 576 120 120 9 chr5 138214508 138214620 -14322639 - B1_Mur3 SINE Alu -5 115 1 7 1639 243 295 191 0 chr5 138214620 138214665 -14322594 - B4 SINE B4 -196 96 32 7 1639 405 340 20 13 chr5 138214823 138214972 -14322287 + ID_B1 SINE B4 75 224 0 7 1639 207 326 71 40 chr5 138215002 138215101 -14322158 + MIRb SINE MIR 79 180 -88 7 1639 210 143 0 0 chr5 138215122 138215157 -14322102 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1639 1721 11 0 16 chr5 138215159 138215352 -14321907 - B2_Mm1t SINE B2 -3 190 1 7 1639 1120 29 81 0 chr5 138215355 138215491 -14321768 - B1_Mm SINE Alu 0 147 1 7 1639 1315 95 26 21 chr5 138215491 138215683 -14321576 - B2_Mm2 SINE B2 0 195 2 7 1639 1138 48 0 65 chr5 138215738 138215893 -14321366 + B1_Mus2 SINE Alu 2 146 -1 7 1639 927 146 35 0 chr5 138215935 138216079 -14321180 + B1_Mur4 SINE Alu 2 150 0 7 1639 780 195 25 20 chr5 138216088 138216277 -14320982 + B3 SINE B2 1 192 -3 7 1639 950 267 24 0 chr5 138216293 138216499 -14320760 + ID_B1 SINE B4 5 215 -9 7 1639 230 156 22 0 chr5 138216677 138216718 -14320541 + B3A SINE B2 1 42 -156 7 1639 2239 85 0 3 chr5 138216718 138217036 -14320223 + ORR1A2 LTR MaLR 1 317 -10 7 1639 714 207 27 49 chr5 138217031 138217214 -14320045 + B3 SINE B2 38 216 0 7 1639 535 136 0 33 chr5 138217220 138217311 -14319948 - B1_Mus1 SINE Alu -60 88 1 7 1639 806 251 24 10 chr5 138217312 138217526 -14319733 - ID_B1 SINE B4 -2 222 3 7 1639 213 225 0 0 chr5 138218137 138218177 -14319082 - RSINE1 SINE B4 -72 93 54 7 1639 868 51 1 9 chr5 138218158 138218283 -14318976 - B2_Mm2 SINE B2 -67 126 2 7 1639 1029 117 0 0 chr5 138218307 138218444 -14318815 + B1_Mus1 SINE Alu 2 138 -10 7 1639 480 62 0 0 chr5 138218485 138218549 -14318710 + (CA)n Simple_repeat Simple_repeat 2 65 0 7 1639 681 283 130 23 chr5 138218549 138218896 -14318363 + RMER5 LTR ERV1 146 529 -5 7 1639 689 217 0 7 chr5 138219066 138219210 -14318049 - B4A SINE B4 -6 286 144 7 1639 1215 54 7 0 chr5 138219283 138219430 -14317829 - B1_Mus1 SINE Alu 0 148 1 7 1639 467 175 126 0 chr5 138219544 138219647 -14317612 - RSINE1 SINE B4 -35 130 15 7 1639 25 31 0 0 chr5 138220463 138220495 -14316764 + GC_rich Low_complexity Low_complexity 1 32 0 7 1639 22 35 0 0 chr5 138221294 138221323 -14315936 + AT_rich Low_complexity Low_complexity 1 29 0 7 1639 357 198 2 2 chr5 138221530 138221600 -14315659 + PB1D10 SINE Alu 29 98 -49 7 1639 239 279 0 0 chr5 138221622 138221683 -14315576 + tRNA-Ala-GCY_ tRNA tRNA 4 64 -11 7 1639 675 242 8 0 chr5 138221865 138221993 -14315266 - B1_Mur2 SINE Alu -20 129 1 7 1639 1173 14 50 0 chr5 138222328 138222468 -14314791 - B1_Mus2 SINE Alu 0 147 1 7 1639 1565 154 204 3 chr5 138222531 138222875 -14314384 + MTC LTR MaLR 1 413 -8 7 1639 355 196 17 70 chr5 138222928 138223043 -14314216 - PB1D9 SINE Alu -7 113 5 7 1639 232 236 117 11 chr5 138224023 138224117 -14313142 + ID_B1 SINE B4 118 221 -3 7 1639 404 224 143 0 chr5 138224140 138224238 -14313021 + B1_Mus1 SINE Alu 32 143 -5 7 1639 210 271 14 41 chr5 138224239 138224312 -14312947 + ID4_ SINE ID 2 72 -11 7 1639 22 0 0 0 chr5 138228316 138228338 -14308921 + AT_rich Low_complexity Low_complexity 1 22 0 7 1639 916 24 186 0 chr5 138229763 138229887 -14307372 - B1_Mus2 SINE Alu 0 147 1 7 1639 216 122 0 0 chr5 138230096 138230137 -14307122 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 7 1639 606 183 142 56 chr5 138230288 138230300 -14306959 - B2_Mm2 SINE B2 -19 176 168 7 1639 186 43 0 0 chr5 138230300 138230323 -14306936 + (CAT)n Simple_repeat Simple_repeat 2 24 0 7 1639 606 183 142 56 chr5 138230323 138230472 -14306787 - B2_Mm2 SINE B2 -28 167 1 7 1639 444 298 18 85 chr5 138230604 138230769 -14306490 - RSINE1 SINE B4 0 165 12 7 1639 219 246 0 0 chr5 138230775 138230832 -14306427 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 7 1639 448 282 29 44 chr5 138230851 138230988 -14306271 - B1F1 SINE Alu -1 148 14 7 1639 191 62 0 59 chr5 138231162 138231196 -14306063 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 7 1639 1193 61 7 0 chr5 138231205 138231352 -14305907 - B1_Mus1 SINE Alu 0 148 1 7 1639 1198 85 12 0 chr5 138231360 138231524 -14305735 - B2_Mm1t SINE B2 0 193 28 7 1639 260 238 146 24 chr5 138231545 138231627 -14305632 - PB1D10 SINE Alu 0 117 26 7 1639 922 80 0 8 chr5 138231725 138231851 -14305408 + B2_Mm2 SINE B2 1 125 -70 7 1639 379 112 31 3 chr5 138231876 138231972 -14305287 + B2_Mm2 SINE B2 47 181 -14 7 1639 966 73 0 0 chr5 138231986 138232110 -14305149 + B2_Mm2 SINE B2 2 125 -70 7 1639 216 0 0 0 chr5 138232130 138232154 -14305105 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 7 1639 215 146 0 89 chr5 138232415 138232460 -14304799 - B3A SINE B2 -154 44 4 7 1639 578 265 44 25 chr5 138232569 138232728 -14304531 + B4A SINE B4 63 224 -68 7 1639 195 129 0 0 chr5 138232728 138232759 -14304500 + (A)n Simple_repeat Simple_repeat 1 31 0 7 1639 499 184 170 44 chr5 138232874 138233033 -14304226 - B2_Mm2 SINE B2 -3 192 14 7 1639 261 0 0 0 chr5 138233033 138233062 -14304197 + (TC)n Simple_repeat Simple_repeat 2 30 0 7 1639 788 206 18 174 chr5 138233312 138233530 -14303729 - B3 SINE B2 -6 210 9 7 1639 234 0 0 0 chr5 138233540 138233566 -14303693 + (TC)n Simple_repeat Simple_repeat 2 27 0 7 1639 366 80 0 0 chr5 138233567 138233617 -14303642 + (TATG)n Simple_repeat Simple_repeat 1 50 0 7 1639 466 297 70 8 chr5 138233635 138233764 -14303495 - B1F2 SINE Alu -12 137 1 7 1639 273 171 0 0 chr5 138233773 138233818 -14303441 + T-rich Low_complexity Low_complexity 32 76 0 7 1639 1303 27 0 0 chr5 138233818 138233966 -14303293 - B1_Mus1 SINE Alu 0 148 1 8 1639 273 171 0 0 chr5 138233966 138233996 -14303263 + T-rich Low_complexity Low_complexity 2 31 0 8 1639 829 197 0 0 chr5 138233999 138234146 -14303113 - B1_Mus2 SINE Alu 0 147 1 8 1639 585 255 82 12 chr5 138234155 138234339 -14302920 - B3A SINE B2 -4 212 22 8 1639 243 0 0 0 chr5 138234901 138234928 -14302331 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1639 1222 48 7 0 chr5 138234947 138235094 -14302165 - B1_Mus1 SINE Alu 0 148 1 8 1639 953 157 7 0 chr5 138235109 138235256 -14302003 - B1_Mus1 SINE Alu 0 148 1 8 1639 180 0 0 0 chr5 138235271 138235291 -14301968 + (TTA)n Simple_repeat Simple_repeat 2 21 0 8 1639 1076 99 0 21 chr5 138235291 138235427 -14301832 - B1_Mus1 SINE Alu -11 137 2 8 1639 425 213 31 24 chr5 138236263 138236373 -14300886 + B1F SINE Alu 12 120 0 8 1639 398 261 0 156 chr5 138236373 138236417 -14300842 + ID_B1 SINE B4 93 222 -2 8 1639 311 218 24 60 chr5 138236417 138236500 -14300759 + ID4_ SINE ID 2 81 -2 8 1639 775 191 144 0 chr5 138236945 138237118 -14300141 + B3A SINE B2 1 198 0 8 1639 201 328 77 85 chr5 138237207 138237337 -14299922 - L2c LINE L2 -144 3243 3115 8 1639 332 280 0 47 chr5 138238137 138238223 -14299036 - ID4_ SINE ID 0 83 2 8 1639 631 219 41 0 chr5 138238224 138238347 -14298912 - B1_Mur1 SINE Alu -17 132 5 8 1639 250 363 10 10 chr5 138238269 138238372 -14298887 - B4A SINE B4 -125 167 65 8 1639 248 300 68 60 chr5 138238362 138238479 -14298780 - PB1 SINE Alu 0 127 10 8 1639 186 71 0 0 chr5 138238493 138238521 -14298738 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 8 1639 446 268 58 11 chr5 138238540 138238674 -14298585 - B1F SINE Alu 0 149 13 8 1639 662 277 0 0 chr5 138238715 138238845 -14298414 - ID_B1 SINE B4 -7 217 88 8 1639 531 267 0 24 chr5 138239580 138239703 -14297556 - RSINE1 SINE B4 0 165 46 8 1639 297 109 0 0 chr5 138239779 138239834 -14297425 + (T)n Simple_repeat Simple_repeat 1 55 0 8 1639 1191 61 0 0 chr5 138239834 138239982 -14297277 - B1_Mus1 SINE Alu 0 148 1 8 1639 838 216 86 90 chr5 138240095 138240385 -14296874 - B4 SINE B4 -2 290 2 8 1639 224 279 5 205 chr5 138241411 138241424 -14295835 - B2_Mm2 SINE B2 0 195 183 8 1639 2221 57 4 0 chr5 138241424 138241705 -14295554 - L1Md_F2 LINE L1 0 6582 6301 8 1639 647 220 0 94 chr5 138241705 138241876 -14295383 - B3A SINE B2 0 198 48 8 1639 397 237 26 0 chr5 138241933 138242009 -14295250 - RSINE1 SINE B4 -17 148 71 8 1639 273 314 133 91 chr5 138242797 138243007 -14294252 + B4 SINE B4 63 281 -11 8 1639 247 225 0 0 chr5 138242979 138243019 -14294240 + RSINE1 SINE B4 109 148 -17 8 1639 200 34 0 33 chr5 138243072 138243102 -14294157 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8 1639 702 228 7 14 chr5 138243119 138243266 -14293993 + B1_Mur2 SINE Alu 2 147 -2 8 1639 709 262 16 80 chr5 138243420 138243607 -14293652 - B4 SINE B4 -14 278 104 8 1639 258 32 0 0 chr5 138243629 138243660 -14293599 + (TG)n Simple_repeat Simple_repeat 1 31 0 8 1639 600 250 57 0 chr5 138243667 138243791 -14293468 - RSINE1 SINE B4 -32 133 3 8 1639 195 42 0 0 chr5 138243801 138243825 -14293434 + (T)n Simple_repeat Simple_repeat 1 24 0 8 1639 288 227 105 13 chr5 138243831 138243907 -14293352 - B4 SINE B4 -207 85 3 8 1639 4448 194 38 7 chr5 138244116 138244967 -14292292 - Lx5 LINE L1 -4 7046 6170 8 1639 512 274 111 40 chr5 138245445 138245617 -14291642 + B3A SINE B2 28 216 0 8 1639 944 150 0 0 chr5 138245631 138245764 -14291495 + B1_Mur4 SINE Alu 5 137 -13 8 1639 182 338 0 48 chr5 138245838 138245922 -14291337 - L2 LINE L2 -540 2879 2800 8 1639 182 299 125 123 chr5 138245995 138246260 -14290999 - L2 LINE L2 -716 2703 2406 8 1639 356 275 0 0 chr5 138246260 138246340 -14290919 + ID4_ SINE ID 2 81 -2 8 1639 182 299 125 123 chr5 138246340 138246715 -14290544 - L2 LINE L2 -1014 2405 2062 8 1639 851 268 139 22 chr5 138246797 138247156 -14290103 - Lx8 LINE L1 -33 7440 7040 8 1639 1261 48 0 0 chr5 138247177 138247323 -14289936 - B1_Mus2 SINE Alu -1 146 1 8 1639 762 266 37 14 chr5 138247435 138247652 -14289607 - ID_B1 SINE B4 -1 223 2 8 1639 1238 181 20 0 chr5 138247712 138247916 -14289343 - B3 SINE B2 -5 211 4 8 1639 318 26 0 0 chr5 138248097 138248136 -14289123 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1639 862 254 120 0 chr5 138248139 138248356 -14288903 - B4A SINE B4 -6 286 44 8 1639 549 285 0 30 chr5 138248866 138249000 -14288259 + B4A SINE B4 2 131 -161 8 1639 315 235 151 56 chr5 138248952 138249038 -14288221 + MT2B2 LTR ERVL 155 251 -333 8 1639 696 228 46 41 chr5 138249038 138249235 -14288024 + B3A SINE B2 1 198 0 8 1639 287 280 31 66 chr5 138249241 138249386 -14287873 + PB1D9 SINE Alu 3 139 -8 8 1639 216 97 0 0 chr5 138249386 138249417 -14287842 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 8 1639 1393 64 21 0 chr5 138249842 138250030 -14287229 - B2_Mm1a SINE B2 -1 192 1 8 1639 589 223 60 156 chr5 138250050 138250268 -14286991 - B3A SINE B2 0 198 2 8 1639 477 211 176 114 chr5 138250387 138250412 -14286847 - B4 SINE B4 -57 235 215 8 1639 275 67 44 0 chr5 138250412 138250457 -14286802 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 8 1639 477 211 176 114 chr5 138250457 138250624 -14286635 - B4 SINE B4 -78 214 31 8 1639 504 222 165 28 chr5 138250774 138250950 -14286309 - B3 SINE B2 -3 213 14 8 1639 205 355 61 53 chr5 138251016 138251147 -14286112 + MIR3 SINE MIR 41 172 -36 8 1639 200 264 39 65 chr5 138251714 138251791 -14285468 - MIR3 SINE MIR -10 198 124 8 1639 270 263 74 0 chr5 138252418 138252513 -14284746 - B1_Mm SINE Alu -41 106 5 8 1639 776 214 11 60 chr5 138253412 138253596 -14283663 - ID_B1 SINE B4 -4 220 46 8 1639 3409 18 32 8 chr5 138253605 138254006 -14283253 - IAPLTR2a LTR ERVK 0 411 1 8 1639 6503 63 11 17 chr5 138254008 138254842 -14282417 - IAPEz-int LTR ERVK -2 6479 5651 8 1639 11246 56 41 33 chr5 138254835 138256314 -14280945 - IAPEz-int LTR ERVK -4781 1700 211 8 1639 882 86 8 0 chr5 138256314 138256431 -14280828 - IAPEz-int LTR ERVK -6196 285 168 8 1639 240 309 0 0 chr5 138256431 138256486 -14280773 - RLTR27 LTR ERVK -34 275 221 8 1639 253 0 0 0 chr5 138256486 138256513 -14280746 - IAPEz-int LTR ERVK -1787 200 174 8 1639 234 219 0 0 chr5 138256513 138256554 -14280705 - RLTR27 LTR ERVK -38 271 231 8 1639 613 115 16 124 chr5 138256554 138256683 -14280576 - IAPEz-int LTR ERVK -6358 123 9 8 1639 3373 18 46 0 chr5 138256684 138257077 -14280182 - IAPLTR2a LTR ERVK 0 411 1 8 1639 308 260 101 25 chr5 138257184 138257263 -14279996 - MER20 DNA MER1_type -131 88 4 8 1639 574 238 41 20 chr5 138257620 138257766 -14279493 + B1F1 SINE Alu 1 149 0 8 1639 578 274 72 11 chr5 138257842 138258023 -14279236 - B3A SINE B2 -6 192 1 8 1639 203 163 0 58 chr5 138259065 138259117 -14278142 + GA-rich Low_complexity Low_complexity 1 49 0 8 1639 341 272 25 42 chr5 138259527 138259646 -14277613 - RSINE1 SINE B4 -41 124 8 8 1639 747 304 36 68 chr5 138259843 138260122 -14277137 - B4 SINE B4 -1 291 22 8 1639 404 267 39 19 chr5 138260906 138261009 -14276250 + B1F SINE Alu 45 149 0 8 1639 613 165 18 27 chr5 138261112 138261224 -14276035 + PB1D9 SINE Alu 9 119 -1 8 1639 465 222 11 0 chr5 138261417 138261507 -14275752 - RSINE1 SINE B4 0 165 75 8 1639 926 148 7 20 chr5 138261537 138261689 -14275570 - B1_Mur4 SINE Alu 0 150 1 8 1639 345 271 214 27 chr5 138261689 138261909 -14275350 - Lx8 LINE L1 -11 7462 7202 8 1639 953 172 77 0 chr5 138261918 138262087 -14275172 + B3 SINE B2 30 211 -5 8 1639 2102 88 39 16 chr5 138262240 138262552 -14274707 - ORR1A2 LTR MaLR -8 319 1 8 1639 864 302 72 14 chr5 138262588 138262947 -14274312 - Lx8 LINE L1 -451 7022 6643 8 1639 823 241 87 5 chr5 138262957 138263153 -14274106 - B3 SINE B2 -4 212 1 8 1639 184 290 165 29 chr5 138263167 138263270 -14273989 - MIRb SINE MIR -124 144 28 8 1639 207 0 0 0 chr5 138263858 138263881 -14273378 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1639 1579 57 0 5 chr5 138264224 138264418 -14272841 + B2_Mm1a SINE B2 1 193 0 8 1639 761 236 153 37 chr5 138265337 138265553 -14271706 + B4A SINE B4 1 241 -51 8 1639 758 254 57 48 chr5 138265531 138265779 -14271480 + B4A SINE B4 43 292 0 8 1639 309 289 26 0 chr5 138265794 138265870 -14271389 + B4A SINE B4 215 292 0 8 1639 707 298 47 0 chr5 138265904 138266075 -14271184 + B4 SINE B4 72 250 -42 8 1639 506 314 13 6 chr5 138266080 138266237 -14271022 + RSINE1 SINE B4 2 159 -6 8 1639 23 0 0 0 chr5 138266258 138266281 -14270978 + AT_rich Low_complexity Low_complexity 1 23 0 8 1639 1946 177 82 90 chr5 138266642 138267132 -14270127 + RLTR11A LTR ERVK 1 486 -42 8 1639 657 0 0 0 chr5 138267138 138267211 -14270048 + (TA)n Simple_repeat Simple_repeat 1 73 0 8 1639 888 172 72 24 chr5 138267289 138267498 -14269761 + ID_B1 SINE B4 1 219 -5 8 1639 211 0 0 81 chr5 138268113 138268150 -14269109 + (TGGGGG)n Simple_repeat Simple_repeat 1 34 0 8 1639 650 253 21 48 chr5 138268587 138268774 -14268485 - B3A SINE B2 -16 182 1 8 1639 217 203 0 33 chr5 138268831 138268892 -14268367 + T-rich Low_complexity Low_complexity 2 60 0 8 1639 1177 159 38 10 chr5 138268980 138269189 -14268070 - B3 SINE B2 0 216 2 8 1639 776 232 20 61 chr5 138269370 138269567 -14267692 - B3A SINE B2 -2 196 8 8 1639 1074 238 126 30 chr5 138269693 138270026 -14267233 + ORR1D2 LTR MaLR 1 365 -5 8 1639 262 331 34 75 chr5 138271066 138271213 -14266046 + YREP_Mm Unknown Unknown 167 307 -1505 8 1639 620 259 0 16 chr5 138271087 138271231 -14266028 - ID_B1 SINE B4 -10 214 81 8 1639 22 0 0 0 chr5 138271231 138271253 -14266006 + AT_rich Low_complexity Low_complexity 1 22 0 8 1639 354 98 0 0 chr5 138271292 138271343 -14265916 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1639 265 268 0 0 chr5 138271977 138272033 -14265226 - B4 SINE B4 -21 271 216 8 1639 830 215 156 22 chr5 138272043 138272267 -14264992 - B4 SINE B4 -37 255 2 9 1639 977 215 52 5 chr5 138273376 138273568 -14263691 + Lx8 LINE L1 6215 6415 -1058 9 1639 380 385 59 80 chr5 138273694 138273973 -14263286 - B4A SINE B4 0 292 20 9 1639 215 338 72 86 chr5 138273968 138273986 -14263273 - B4 SINE B4 -47 245 227 8 1639 1291 105 10 25 chr5 138273986 138274182 -14263077 - B2_Mm1t SINE B2 0 193 1 9 1639 640 264 28 2 chr5 138274182 138274335 -14262924 - ID_B1 SINE B4 -66 226 72 8 1639 691 230 0 39 chr5 138274312 138274327 -14262932 + ID_B1 SINE B4 73 219 -4 9 1639 957 159 0 0 chr5 138274327 138274465 -14262794 + B1_Mur1 SINE Alu 7 144 -5 9 1639 270 309 31 39 chr5 138274466 138274594 -14262665 - L1MB4 LINE L1 -4 6176 6050 9 1639 25 65 0 0 chr5 138275160 138275206 -14262053 + AT_rich Low_complexity Low_complexity 1 46 0 9 1639 320 274 0 12 chr5 138275215 138275235 -14262024 - B4 SINE B4 -2 290 271 9 1639 540 121 0 0 chr5 138275235 138275326 -14261933 + (TG)n Simple_repeat Simple_repeat 2 92 0 9 1639 320 274 0 12 chr5 138275326 138275390 -14261869 - B4 SINE B4 -22 270 208 9 1639 708 241 47 26 chr5 138275382 138275574 -14261685 + B4A SINE B4 85 280 -12 9 1639 390 85 0 0 chr5 138275589 138275648 -14261611 + (CA)n Simple_repeat Simple_repeat 2 60 0 9 1639 342 0 0 0 chr5 138278892 138278930 -14258329 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1639 383 326 14 27 chr5 138278940 138279088 -14258171 - ID_B1 SINE B4 -21 203 58 9 204 33979 73 2 0 chr5 138279089 138284543 -14252716 + L1Md_F2 LINE L1 187 5586 -297 9 1640 8145 48 2 3 chr5 138284543 138285540 -14251719 + L1Md_F2 LINE L1 5587 6582 0 9 1640 2632 66 0 97 chr5 138285576 138285980 -14251279 + RLTR10B2 LTR ERVK 1 365 0 9 1640 1395 78 0 6 chr5 138285980 138286161 -14251098 + MMERVK10C-int LTR ERVK 1 180 -7401 9 1640 252 204 0 0 chr5 138286161 138286205 -14251054 + RLTR27 LTR ERVK 231 274 -35 9 1640 368 47 0 0 chr5 138286206 138286249 -14251010 + MMERVK10C-int LTR ERVK 225 267 -7314 9 1640 454 65 41 41 chr5 138286337 138286434 -14250825 + (GGAAA)n Simple_repeat Simple_repeat 3 99 0 9 1640 367 67 0 0 chr5 138286469 138286514 -14250745 + RLTR10-int LTR ERVK 93 137 -6405 9 1640 2955 32 9 0 chr5 138286517 138286855 -14250404 + RLTR10-int LTR ERVK 652 992 -995 9 1640 487 319 38 48 chr5 138286880 138287279 -14249980 + RLTR10-int LTR ERVK 1172 1566 -6015 9 1640 1525 101 119 0 chr5 138287289 138287516 -14249743 + IAP-d-int LTR ERVK 5002 5255 -1287 9 1640 4099 140 44 3 chr5 138287520 138288179 -14249080 + IAPEY3-int LTR ERVK 6995 7680 0 9 1640 2886 68 0 27 chr5 138288179 138288554 -14248705 + RLTR10B2 LTR ERVK 1 365 0 9 1640 320 314 32 16 chr5 138289562 138289688 -14247571 + B1_Mm SINE Alu 1 128 -21 9 1640 3513 25 2 0 chr5 138289770 138290165 -14247094 + MTA_Mm LTR MaLR 1 396 0 9 1640 9295 31 6 2 chr5 138290165 138291259 -14246000 + MTA_Mm-int LTR MaLR 1 1098 0 9 1640 3509 28 2 0 chr5 138291259 138291654 -14245605 + MTA_Mm LTR MaLR 1 396 0 9 1640 323 371 21 90 chr5 138291813 138291883 -14245376 - ID_B1 SINE B4 -8 216 154 9 1640 1063 182 62 0 chr5 138291883 138292092 -14245167 - URR1A DNA MER1_type 0 226 5 9 1640 323 371 21 90 chr5 138292092 138292166 -14245093 - ID_B1 SINE B4 -71 153 82 9 1640 458 281 0 9 chr5 138293765 138293880 -14243379 - RSINE1 SINE B4 -46 119 6 9 1640 375 358 83 9 chr5 138293968 138294185 -14243074 - B4 SINE B4 -59 233 1 9 1640 471 245 0 9 chr5 138294902 138295013 -14242246 - ID_B1 SINE B4 -7 217 108 9 1640 439 292 212 13 chr5 138295270 138295506 -14241753 - B4 SINE B4 0 292 10 9 1640 280 351 79 7 chr5 138296575 138296642 -14240617 + B4A SINE B4 14 91 -201 9 1640 403 301 26 9 chr5 138296642 138296756 -14240503 + B1_Mur1 SINE Alu 1 116 -33 9 1640 659 259 77 61 chr5 138296765 138296946 -14240313 + B4 SINE B4 109 292 0 9 1640 362 329 25 0 chr5 138296839 138297000 -14240259 - RLTR21 LTR ERVK -243 1329 1165 9 1640 486 70 0 0 chr5 138297017 138297088 -14240171 + (CA)n Simple_repeat Simple_repeat 2 72 0 9 1640 862 242 43 0 chr5 138297189 138297400 -14239859 + URR1A DNA MER1_type 7 226 0 9 1640 492 293 144 32 chr5 138297400 138297447 -14239812 - CYRA11_Mm Unknown Y-chromosome -434 183 109 9 1640 269 295 22 11 chr5 138297431 138297520 -14239739 + B1_Mur2 SINE Alu 60 149 0 9 1640 436 72 29 0 chr5 138297520 138297589 -14239670 + (GAAA)n Simple_repeat Simple_repeat 1 71 0 9 1640 243 0 0 0 chr5 138300703 138300730 -14236529 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1640 463 343 12 23 chr5 138300740 138300913 -14236346 - ID_B1 SINE B4 -21 203 33 9 1640 2740 60 0 99 chr5 138300917 138301322 -14235937 + RLTR10B2 LTR ERVK 1 365 0 9 1640 1336 64 0 6 chr5 138301322 138301494 -14235765 + MMERVK10C-int LTR ERVK 1 171 -7410 9 1640 273 259 0 0 chr5 138301494 138301548 -14235711 + RLTR27 LTR ERVK 222 275 -34 9 1640 400 0 0 0 chr5 138301548 138301591 -14235668 + MMERVK10C-int LTR ERVK 225 267 -7314 9 1640 1480 77 0 0 chr5 138301648 138301842 -14235417 + B2_Mm2 SINE B2 2 195 0 9 1640 442 65 41 41 chr5 138301877 138301974 -14235285 + (GGAAA)n Simple_repeat Simple_repeat 3 99 0 9 1640 367 67 0 0 chr5 138302009 138302054 -14235205 + RLTR10-int LTR ERVK 93 137 -6405 9 1640 2952 41 0 0 chr5 138302057 138302398 -14234861 + RLTR10-int LTR ERVK 652 992 -995 9 1640 485 318 38 49 chr5 138302452 138302822 -14234437 + RLTR10-int LTR ERVK 1201 1566 -6015 9 1640 1600 100 100 0 chr5 138302832 138303063 -14234196 + IAP-d-int LTR ERVK 5002 5255 -1287 9 1640 4416 135 15 3 chr5 138303067 138303745 -14233514 + IAPEY3-int LTR ERVK 6995 7680 0 9 1640 2957 60 0 27 chr5 138303745 138304120 -14233139 + RLTR10B2 LTR ERVK 1 365 0 9 1640 344 306 32 16 chr5 138305128 138305254 -14232005 + B1_Mur2 SINE Alu 1 128 -21 9 1640 373 368 19 83 chr5 138305490 138305560 -14231699 - ID_B1 SINE B4 -8 216 154 9 1640 1059 182 62 0 chr5 138305560 138305769 -14231490 - URR1A DNA MER1_type 0 226 5 9 1640 373 368 19 83 chr5 138305769 138305855 -14231404 - ID_B1 SINE B4 -71 153 70 9 1640 444 298 0 9 chr5 138307445 138307560 -14229699 - RSINE1 SINE B4 -46 119 6 9 1640 27 29 0 0 chr5 138307579 138307613 -14229646 + AT_rich Low_complexity Low_complexity 1 34 0 9 1640 482 313 88 14 chr5 138307648 138307865 -14229394 - B4 SINE B4 -59 233 1 9 1640 530 218 0 9 chr5 138308582 138308693 -14228566 - ID_B1 SINE B4 -7 217 108 9 1640 429 296 212 13 chr5 138308954 138309190 -14228069 - B4 SINE B4 0 292 10 9 1640 270 358 79 7 chr5 138310275 138310326 -14226933 + B4A SINE B4 14 174 -116 9 1640 277 253 61 81 chr5 138310326 138310342 -14226917 + MT2B LTR ERVL 144 157 -444 9 1640 403 301 26 9 chr5 138310342 138310456 -14226803 + B1_Mur1 SINE Alu 1 116 -33 9 1640 643 265 77 61 chr5 138310465 138310646 -14226613 + B4 SINE B4 109 292 0 9 1640 609 69 0 0 chr5 138310717 138310804 -14226455 + (CA)n Simple_repeat Simple_repeat 2 88 0 9 1640 848 246 43 0 chr5 138310905 138311116 -14226143 + URR1A DNA MER1_type 7 226 0 9 1640 254 307 22 11 chr5 138311147 138311236 -14226023 + B1_Mur2 SINE Alu 60 149 0 9 1640 385 66 33 0 chr5 138311236 138311297 -14225962 + (GAAA)n Simple_repeat Simple_repeat 1 63 0 9 1640 300 336 37 93 chr5 138313182 138313343 -14223916 - HAL1-3A_ME LINE L1 -423 2435 2284 9 1640 396 0 0 0 chr5 138314424 138314468 -14222791 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1640 306 302 0 36 chr5 138314478 138314588 -14222671 - ID_B1 SINE B4 -21 203 98 9 1640 231 36 0 0 chr5 138314661 138314689 -14222570 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 9 1640 6978 31 5 0 chr5 138314779 138315590 -14221669 - L1Md_T LINE L1 0 6582 5768 9 1640 320 250 0 0 chr5 138316003 138316075 -14221184 + B1_Mur2 SINE Alu 77 148 -1 9 1640 691 293 10 34 chr5 138318830 138319035 -14218224 - ID_B1 SINE B4 -21 203 4 9 1640 398 292 6 77 chr5 138319643 138319799 -14217460 + B1_Mur2 SINE Alu 5 149 0 9 1640 349 347 17 11 chr5 138319831 138320006 -14217253 + Lx8 LINE L1 7202 7377 -96 9 1640 13041 76 5 14 chr5 138320078 138321720 -14215539 - L1_Mus1 LINE L1 0 6567 4935 9 1640 1636 31 0 15 chr5 138321720 138321915 -14215344 + B2_Mm1a SINE B2 2 193 0 9 1640 13041 90 6 21 chr5 138321915 138322128 -14215131 - L1_Mus1 LINE L1 -949 4934 4736 9 1640 246 42 62 0 chr5 138322128 138322176 -14215083 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 9 1640 13041 90 6 21 chr5 138322176 138322869 -14214390 - L1_Mus1 LINE L1 -1148 4735 4051 9 1640 391 340 19 83 chr5 138323959 138324045 -14213214 + ID_B1 SINE B4 70 150 -74 9 1640 979 197 67 0 chr5 138324045 138324253 -14213006 + URR1A DNA MER1_type 5 226 0 9 1640 391 340 19 83 chr5 138324253 138324323 -14212936 + ID_B1 SINE B4 151 216 -8 9 1640 428 279 28 35 chr5 138324514 138324659 -14212600 - B1_Mur3 SINE Alu -2 147 4 9 1640 5143 109 85 4 chr5 138325277 138325620 -14211639 + RMER17D LTR ERVK 1 364 -525 9 1640 809 63 20 27 chr5 138325620 138325766 -14211493 + (TCTCC)n Simple_repeat Simple_repeat 4 148 0 9 1640 5143 109 85 4 chr5 138325766 138325778 -14211481 + RMER17D LTR ERVK 365 382 -507 9 1640 1238 85 6 0 chr5 138325778 138325955 -14211304 + (TTCTCC)n Simple_repeat Simple_repeat 1 178 0 9 1640 5143 109 85 4 chr5 138325955 138326418 -14210841 + RMER17D LTR ERVK 383 885 -4 9 1640 234 0 0 0 chr5 138326681 138326707 -14210552 + (TG)n Simple_repeat Simple_repeat 1 26 0 9 1640 885 107 0 0 chr5 138326707 138326837 -14210422 + (GA)n Simple_repeat Simple_repeat 1 131 0 9 1640 198 82 19 58 chr5 138327044 138327096 -14210163 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 9 1640 370 297 11 0 chr5 138327116 138327207 -14210052 - B1_Mur2 SINE Alu -11 138 47 9 1640 600 318 20 20 chr5 138327543 138327742 -14209517 + ID_B1 SINE B4 5 203 -21 9 1640 755 199 14 28 chr5 138330854 138330999 -14206260 - B1_Mur2 SINE Alu -2 147 5 9 1640 37 62 0 0 chr5 138331244 138331309 -14205950 + AT_rich Low_complexity Low_complexity 1 65 0 9 1640 247 284 0 0 chr5 138331309 138331376 -14205883 + (TG)n Simple_repeat Simple_repeat 2 68 0 9 1640 420 274 52 26 chr5 138331421 138331537 -14205722 - B4 SINE B4 -63 229 111 9 1640 427 263 20 20 chr5 138331557 138331658 -14205601 - B1_Mur1 SINE Alu -32 117 17 9 1640 476 348 44 17 chr5 138331568 138331749 -14205510 - B4 SINE B4 -97 195 10 9 1640 328 293 57 8 chr5 138333158 138333282 -14203977 + ID_B1 SINE B4 80 209 -15 9 1640 5308 161 55 32 chr5 138333454 138334350 -14202909 + Lx3_Mus LINE L1 4924 5856 -1144 9 1640 303 238 44 0 chr5 138334350 138334426 -14202833 - B3A SINE B2 -51 165 89 9 1640 5308 161 55 32 chr5 138334426 138334732 -14202527 + Lx3_Mus LINE L1 5857 6176 -824 9 1640 485 309 36 12 chr5 138334914 138335081 -14202178 + RMER15 LTR ERVL 391 561 -14 9 1640 766 250 22 50 chr5 138335711 138335892 -14201367 - B4 SINE B4 -45 247 72 9 1640 243 0 0 0 chr5 138335955 138335982 -14201277 + (CTTG)n Simple_repeat Simple_repeat 2 28 0 9 1640 363 212 24 36 chr5 138335985 138336068 -14201191 - B4 SINE B4 -209 83 2 9 1640 388 226 25 50 chr5 138336094 138336215 -14201044 - Lx4B LINE L1 -1 7057 6940 9 1640 485 299 63 6 chr5 138336848 138337006 -14200253 - Lx8 LINE L1 -359 7114 6948 9 1640 26 0 0 0 chr5 138337223 138337249 -14200010 + AT_rich Low_complexity Low_complexity 1 26 0 1 1640 223 195 0 0 chr5 138337479 138337520 -14199739 + A-rich Low_complexity Low_complexity 1 41 0 1 1640 254 189 62 16 chr5 138338365 138338494 -14198765 + CT-rich Low_complexity Low_complexity 2 136 0 1 1640 23 68 0 0 chr5 138338704 138338748 -14198511 + AT_rich Low_complexity Low_complexity 1 44 0 1 1640 842 127 40 0 chr5 138338749 138338899 -14198360 - Lx3A LINE L1 -6 6975 6820 1 1640 252 0 0 0 chr5 138339187 138339215 -14198044 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1640 392 0 21 0 chr5 138341656 138341704 -14195555 + (TTTTA)n Simple_repeat Simple_repeat 3 51 0 1 1640 276 102 0 0 chr5 138341705 138341754 -14195505 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1640 606 39 0 0 chr5 138341754 138341830 -14195429 + (GA)n Simple_repeat Simple_repeat 1 77 0 1 1640 537 204 19 0 chr5 138341842 138341945 -14195314 - RSINE1 SINE B4 -36 129 25 1 1640 409 358 84 16 chr5 138342486 138342676 -14194583 - B4A SINE B4 0 292 90 1 1640 401 292 0 11 chr5 138342769 138342859 -14194400 + B4A SINE B4 8 96 -196 1 1640 721 217 89 18 chr5 138343170 138343339 -14193920 + B3A SINE B2 2 182 -16 1 1640 482 271 73 6 chr5 138343823 138344001 -14193258 + L1MC1 LINE L1 6039 6228 -105 1 1640 750 139 16 0 chr5 138344003 138344132 -14193127 + Lx5 LINE L1 4277 4407 -1470 1 1640 7685 159 29 43 chr5 138344120 138345378 -14191881 + Lx5 LINE L1 5468 6724 -326 1 1640 453 19 0 0 chr5 138345378 138345432 -14191827 + (CA)n Simple_repeat Simple_repeat 2 55 0 1 1640 7685 170 39 34 chr5 138345432 138345741 -14191518 + Lx5 LINE L1 6725 7049 -1 1 1640 576 286 58 7 chr5 138345770 138345925 -14191334 + RSINE1 SINE B4 3 165 0 1 1640 249 33 0 0 chr5 138346596 138346626 -14190633 + (GGTTG)n Simple_repeat Simple_repeat 2 31 0 1 1640 225 135 0 0 chr5 138347442 138347479 -14189780 + PB1D10 SINE Alu 79 115 -2 1 1640 302 267 66 16 chr5 138347729 138347851 -14189408 - L1MA5 LINE L1 -51 6249 6122 1 1640 1742 48 0 5 chr5 138347952 138348160 -14189099 - L1_Mus1 LINE L1 0 6567 6361 1 1640 339 25 0 0 chr5 138348555 138348595 -14188664 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1640 612 316 91 40 chr5 138349159 138349433 -14187826 + B4 SINE B4 1 288 -4 1 1640 517 282 74 43 chr5 138349591 138349943 -14187316 + L1MB7 LINE L1 3084 3446 -2700 1 1640 466 314 44 32 chr5 138350146 138350458 -14186801 + L1MB7 LINE L1 3494 3820 -2326 1 1640 1044 305 87 26 chr5 138350574 138351112 -14186147 + L1MB7 LINE L1 5613 6183 -1 1 1640 716 259 16 74 chr5 138351514 138351756 -14185503 + MTE2a LTR MaLR 1 228 -151 1 1640 229 250 286 0 chr5 138351745 138351829 -14185430 - RSINE1 SINE B4 -55 110 3 1 1640 198 0 0 0 chr5 138352289 138352311 -14184948 + (CCCTAA)n Simple_repeat Simple_repeat 1 22 0 1 1640 1420 227 87 9 chr5 138352396 138352729 -14184530 + ORR1E LTR MaLR 1 359 0 1 1640 1942 146 15 12 chr5 138353516 138353843 -14183416 + L1_Mur1 LINE L1 5348 5675 -211 1 1640 5932 148 32 1 chr5 138353847 138354796 -14182463 + Lx3C LINE L1 5996 6973 -3 1 1640 22 35 0 0 chr5 138354796 138354825 -14182434 + AT_rich Low_complexity Low_complexity 1 29 0 1 1640 387 0 0 0 chr5 138354914 138354957 -14182302 + (TAAAA)n Simple_repeat Simple_repeat 3 45 0 1 1640 434 308 63 29 chr5 138355250 138355424 -14181835 + B4A SINE B4 4 183 -109 1 1640 266 50 0 24 chr5 138355544 138355585 -14181674 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1640 219 103 0 0 chr5 138355585 138355624 -14181635 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1640 312 256 0 91 chr5 138355624 138355763 -14181496 + L1MA4 LINE L1 5766 5894 -262 1 1640 594 261 165 21 chr5 138355827 138356015 -14181244 + B3 SINE B2 1 215 -1 1 1640 707 319 70 23 chr5 138356442 138356699 -14180560 + B4A SINE B4 1 269 -23 1 1640 1041 203 42 33 chr5 138357761 138357975 -14179284 + B3 SINE B2 1 216 0 1 1640 419 274 0 69 chr5 138357999 138358101 -14179158 + ID_B1 SINE B4 82 176 -48 1 1640 181 0 0 65 chr5 138359052 138359083 -14178176 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1 1640 646 217 223 0 chr5 138359426 138359601 -14177658 + B3 SINE B2 1 214 -2 1 1640 234 0 0 0 chr5 138361243 138361269 -14175990 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1640 426 53 0 0 chr5 138361299 138361356 -14175903 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1640 1471 152 9 4 chr5 138361369 138361594 -14175665 - URR1A DNA MER1_type 0 226 1 1 1640 1283 175 5 19 chr5 138361928 138362138 -14175121 + B3 SINE B2 1 207 -9 1 1640 1242 232 31 182 chr5 138363119 138363147 -14174112 - MTD LTR MaLR 0 419 391 1 1640 306 0 0 0 chr5 138363147 138363181 -14174078 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1640 1242 232 31 182 chr5 138363181 138363357 -14173902 - MTD LTR MaLR -29 390 206 1 1640 506 30 30 0 chr5 138363357 138363424 -14173835 + (TTTCC)n Simple_repeat Simple_repeat 3 71 0 1 1640 1242 232 31 182 chr5 138363424 138363708 -14173551 - MTD LTR MaLR -214 205 6 1 1640 333 0 0 0 chr5 138363807 138363844 -14173415 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1640 3761 307 75 23 chr5 138363844 138366068 -14171191 + L1M2 LINE L1 3233 5584 -716 1 1640 9137 22 6 2 chr5 138366073 138367065 -14170194 + L1Md_F2 LINE L1 5587 6582 0 1 1640 250 301 0 61 chr5 138367882 138367981 -14169278 - L1M2 LINE L1 -1222 4921 4829 1 1640 234 0 0 0 chr5 138368230 138368256 -14169003 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1640 1241 235 85 63 chr5 138368296 138368462 -14168797 + ORR1D1 LTR MaLR 1 164 -210 1 1640 627 14 0 0 chr5 138368462 138368534 -14168725 + (TC)n Simple_repeat Simple_repeat 1 72 0 1 1640 1241 235 85 63 chr5 138368534 138368731 -14168528 + ORR1D1 LTR MaLR 165 372 -2 1 1640 580 296 105 11 chr5 138368969 138369150 -14168109 - B3A SINE B2 0 198 1 1 1640 1519 21 5 11 chr5 138369312 138369501 -14167758 + MTA_Mm LTR MaLR 1 188 -208 1 1640 1778 32 5 0 chr5 138370629 138370846 -14166413 + MTA_Mm LTR MaLR 179 396 0 1 1640 369 233 0 149 chr5 138370846 138370962 -14166297 + MTE-int LTR MaLR 588 685 -895 1 1640 612 294 21 32 chr5 138371007 138371197 -14166062 - RMER15 LTR ERVL 0 575 388 1 1640 365 267 40 65 chr5 138371281 138371405 -14165854 - RMER15 LTR ERVL -417 158 38 1 1640 546 308 123 54 chr5 138371468 138371801 -14165458 + MTE-int LTR MaLR 734 1089 -491 1 1640 1091 45 0 0 chr5 138372196 138372329 -14164930 - B1_Mus1 SINE Alu -8 140 8 1 1640 722 278 13 95 chr5 138372496 138372727 -14164532 - B3 SINE B2 -4 212 1 1 1640 969 226 65 10 chr5 138372812 138373013 -14164246 + ID_B1 SINE B4 8 219 -5 1 1640 287 258 0 0 chr5 138373014 138373076 -14164183 + B4A SINE B4 1 62 -230 1 1640 1112 82 25 0 chr5 138373077 138373236 -14164023 + B2_Mm2 SINE B2 33 195 0 1 1640 378 295 123 0 chr5 138373232 138373354 -14163905 + B4A SINE B4 50 186 -106 1 1640 611 269 0 21 chr5 138373438 138373582 -14163677 - B1_Mur2 SINE Alu -2 147 7 1 1640 399 299 108 7 chr5 138373591 138373739 -14163520 + B3A SINE B2 35 197 -1 1 1640 22 35 0 0 chr5 138373740 138373769 -14163490 + AT_rich Low_complexity Low_complexity 1 29 0 1 1640 214 303 15 0 chr5 138373813 138373879 -14163380 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1640 782 313 104 26 chr5 138374246 138374496 -14162763 + B4A SINE B4 3 277 -15 1 1640 393 129 0 0 chr5 138374496 138374566 -14162693 + (CA)n Simple_repeat Simple_repeat 1 70 0 1 1640 782 313 104 26 chr5 138374566 138374584 -14162675 + B4A SINE B4 278 292 0 1 1640 1021 83 23 0 chr5 138374811 138374944 -14162315 - L1_Mm LINE L1 -267 5616 5481 1 1640 3923 159 85 27 chr5 138374944 138375789 -14161470 + RLTR13D6 LTR ERVK 1 856 -46 1 1640 7836 71 8 3 chr5 138375789 138376812 -14160447 - L1_Mm LINE L1 -397 5486 4459 1 1640 6939 81 0 1 chr5 138376810 138377713 -14159546 + L1_Mus1 LINE L1 5661 6562 -5 1 1640 360 0 0 0 chr5 138378385 138378425 -14158834 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1640 620 238 8 16 chr5 138378426 138378550 -14158709 - RSINE1 SINE B4 -26 139 17 1 1640 494 295 40 45 chr5 138378593 138378792 -14158467 - B3A SINE B2 0 198 1 1 1640 993 266 5 0 chr5 138378820 138379027 -14158232 - B3 SINE B2 -4 212 5 1 1640 765 211 58 12 chr5 138379089 138379262 -14157997 + Lx6 LINE L1 7046 7226 -234 1 1640 374 278 78 0 chr5 138379527 138379642 -14157617 - RMER20B LTR ERVK -503 124 1 1 1640 934 236 75 59 chr5 138379772 138380069 -14157190 - MTD LTR MaLR -2 417 113 1 1640 795 93 0 0 chr5 138380069 138380187 -14157072 + (TCTCCC)n Simple_repeat Simple_repeat 4 121 0 1 1640 934 236 75 59 chr5 138380187 138380209 -14157050 - MTD LTR MaLR -307 112 94 1 1640 183 139 0 0 chr5 138380209 138380245 -14157014 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1640 2051 230 25 39 chr5 138380333 138380996 -14156263 + Lx5 LINE L1 6219 6870 -590 1 1640 1734 60 14 0 chr5 138380996 138381213 -14156046 - L1Md_F2 LINE L1 0 6582 6363 1 1640 2051 275 54 24 chr5 138381213 138381437 -14155822 + Lx5 LINE L1 6776 7003 -47 1 1640 31 0 0 0 chr5 138381469 138381500 -14155759 + AT_rich Low_complexity Low_complexity 1 31 0 1 1640 275 317 94 27 chr5 138381533 138381682 -14155577 - B4 SINE B4 -82 210 52 1 1640 251 312 98 110 chr5 138382726 138382971 -14154288 + ORR1E LTR MaLR 118 359 0 1 1640 230 154 0 0 chr5 138383058 138383097 -14154162 + L1_Mur3 LINE L1 2805 2843 -3037 1 1640 456 158 0 0 chr5 138383139 138383221 -14154038 + L1_Mur3 LINE L1 2839 2920 -2960 1 1640 773 172 14 29 chr5 138383221 138383359 -14153900 + B1_Mur3 SINE Alu 1 136 -13 1 1640 743 67 0 19 chr5 138383361 138383468 -14153791 + (GAAAA)n Simple_repeat Simple_repeat 2 106 0 1 1640 519 95 0 0 chr5 138383471 138383545 -14153714 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 1 1640 404 195 39 0 chr5 138383545 138383622 -14153637 + L1_Mur3 LINE L1 2913 2992 -2888 1 1640 860 69 0 17 chr5 138383622 138383740 -14153519 + B1_Mm SINE Alu 32 147 0 1 1640 24 0 0 0 chr5 138383740 138383764 -14153495 + AT_rich Low_complexity Low_complexity 1 24 0 1 1640 436 248 60 37 chr5 138383936 138384070 -14153189 + Lx8 LINE L1 7015 7151 -322 1 1640 458 183 93 60 chr5 138384315 138384326 -14152933 + CYRA11_Mm Unknown Y-chromosome 160 238 -379 1 1640 756 121 61 0 chr5 138384326 138384458 -14152801 - URR1B DNA MER1_type 0 225 86 1 1640 201 94 56 19 chr5 138384765 138384819 -14152440 + T-rich Low_complexity Low_complexity 4 59 0 1 1640 478 315 136 18 chr5 138384967 138385164 -14152095 + RMER15 LTR ERVL 238 460 -115 1 1640 434 353 80 0 chr5 138385164 138385289 -14151970 + RSINE1 SINE B4 4 140 -25 1 1640 1007 122 0 11 chr5 138385289 138385471 -14151788 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1640 434 353 80 0 chr5 138385471 138385495 -14151764 + RSINE1 SINE B4 141 164 -1 1 1640 5191 53 2 2 chr5 138386452 138387061 -14150198 - L1Md_F2 LINE L1 -10 6572 5964 1 1640 12299 60 2 1 chr5 138387061 138388588 -14148671 - L1_Mm LINE L1 -195 5688 4160 1 1640 442 331 0 14 chr5 138389520 138389667 -14147592 + B4A SINE B4 113 257 -35 1 1640 768 202 88 17 chr5 138389683 138389864 -14147395 + Lx7 LINE L1 7026 7219 -477 1 1640 327 197 0 47 chr5 138389864 138389928 -14147331 - B4A SINE B4 -154 138 78 1 1640 1996 248 2 17 chr5 138389928 138390411 -14146848 - L1VL4 LINE L1 -5567 735 260 1 1640 5051 117 33 17 chr5 138390825 138391584 -14145675 + Lx4A LINE L1 6243 7013 -45 1 1640 852 153 35 0 chr5 138391657 138391801 -14145458 - B1_Mur4 SINE Alu -1 149 1 1 1640 266 284 27 0 chr5 138392058 138392132 -14145127 + ID4_ SINE ID 4 79 -4 1 1640 499 323 77 19 chr5 138392154 138392413 -14144846 - L1_Rod LINE L1 -3 5844 5571 1 1640 278 221 260 0 chr5 138392842 138392919 -14144340 - B3A SINE B2 -90 108 12 1 1640 879 214 150 93 chr5 138393372 138393706 -14143553 + RLTR18B LTR ERVK 5 357 -155 1 1640 696 241 0 0 chr5 138393717 138393858 -14143401 - RLTR18B LTR ERVK -25 487 347 1 1640 300 288 12 0 chr5 138393855 138393935 -14143324 + ORR1D1 LTR MaLR 261 341 -33 1 1640 186 43 0 0 chr5 138393936 138393959 -14143300 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1 1640 641 171 33 40 chr5 138393966 138394118 -14143141 - Lx4B LINE L1 -31 7027 6877 1 1640 738 251 187 20 chr5 138394269 138394675 -14142584 - L1MA8 LINE L1 -3 6288 5815 1 1640 237 132 0 0 chr5 138394678 138394716 -14142543 + (TTCTCC)n Simple_repeat Simple_repeat 5 42 0 1 1640 231 157 225 14 chr5 138394725 138394796 -14142463 - L1MA8 LINE L1 -464 5827 5742 1 1640 544 303 14 41 chr5 138394877 138395097 -14142162 - Lx6 LINE L1 -6 7454 7241 1 1640 469 253 48 12 chr5 138395253 138395421 -14141838 + L1MB8 LINE L1 4988 5161 -985 1 1640 4065 56 0 18 chr5 138395423 138395931 -14141328 + L1_Mus1 LINE L1 6069 6567 0 1 1640 1230 29 0 0 chr5 138395942 138396082 -14141177 + B1_Mus2 SINE Alu 2 141 -6 1 1640 2889 287 57 18 chr5 138396152 138397064 -14140195 + Lx8 LINE L1 6524 7471 -2 1 1640 306 247 180 6 chr5 138397089 138397256 -14140003 + L1MB8 LINE L1 5188 5383 -763 1 1640 286 252 13 106 chr5 138397252 138397403 -14139856 + L1MB8 LINE L1 5903 6039 -139 1 1640 333 0 0 0 chr5 138397435 138397472 -14139787 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1640 565 205 9 0 chr5 138397492 138397604 -14139655 - RSINE1 SINE B4 -49 116 4 1 1640 372 291 30 45 chr5 138397829 138397847 -14139412 + ID_B1 SINE B4 66 196 -28 1 1640 609 219 0 9 chr5 138397847 138397962 -14139297 + B1_Mur1 SINE Alu 5 118 -31 1 1640 387 277 0 0 chr5 138397957 138398051 -14139208 + MTEa LTR MaLR 234 327 -52 1 1640 488 211 171 8 chr5 138398067 138398196 -14139063 + B3A SINE B2 5 154 -44 1 1640 324 0 0 0 chr5 138398201 138398237 -14139022 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1640 426 20 0 0 chr5 138398237 138398287 -14138972 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1640 499 302 139 4 chr5 138399613 138399693 -14137566 + B4 SINE B4 6 172 -120 1 1640 297 221 122 28 chr5 138399693 138399800 -14137459 + PB1 SINE Alu 7 123 -4 1 1640 499 302 139 4 chr5 138399800 138399843 -14137416 + B4 SINE B4 173 266 -26 1 1640 375 219 0 47 chr5 138399857 138399986 -14137273 + GA-rich Low_complexity Low_complexity 2 124 0 1 1640 726 261 34 0 chr5 138400055 138400231 -14137028 - B3A SINE B2 -16 182 1 1 1640 1016 260 22 86 chr5 138400429 138400574 -14136685 - MTE2a LTR MaLR -38 341 201 1 1640 1781 161 40 19 chr5 138400574 138400896 -14136363 + ORR1A4 LTR MaLR 1 329 0 1 1640 1016 254 74 106 chr5 138400896 138401132 -14136127 - MTE2a LTR MaLR -174 245 10 1 1640 875 193 40 92 chr5 138401141 138401182 -14136077 + B3 SINE B2 1 40 -176 1 1640 1228 34 7 0 chr5 138401182 138401328 -14135931 + B1_Mus1 SINE Alu 2 148 0 1 1640 243 0 0 0 chr5 138401332 138401359 -14135900 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1640 875 193 40 92 chr5 138401359 138401540 -14135719 + B3 SINE B2 41 216 0 1 1640 260 125 0 0 chr5 138401562 138401602 -14135657 + B1_Mus2 SINE Alu 2 41 -106 1 1640 235 353 15 0 chr5 138401847 138401915 -14135344 + ZP3AR Satellite Satellite 35 103 -109 1 1640 894 45 0 0 chr5 138401959 138402070 -14135189 + (GA)n Simple_repeat Simple_repeat 1 111 0 1 1640 816 200 0 0 chr5 138402070 138402240 -14135019 + GA-rich Low_complexity Low_complexity 2 171 0 1 1640 338 82 41 0 chr5 138402240 138402289 -14134970 + (GGAA)n Simple_repeat Simple_repeat 4 54 0 1 1640 612 258 105 35 chr5 138402297 138402526 -14134733 + MLT1A0 LTR MaLR 119 363 -2 1 1640 1024 65 0 14 chr5 138402719 138402859 -14134400 + B1_Mus1 SINE Alu 11 148 0 1 1640 459 118 21 21 chr5 138402889 138402984 -14134275 + GA-rich Low_complexity Low_complexity 4 98 0 1 1640 832 239 67 19 chr5 138403103 138403307 -14133952 + ID_B1 SINE B4 3 217 -7 1 1640 212 100 25 0 chr5 138403307 138403347 -14133912 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 1 1640 912 107 31 18 chr5 138403357 138403587 -14133672 + (TAGA)n Simple_repeat Simple_repeat 1 233 0 1 1640 563 245 68 37 chr5 138404429 138404620 -14132639 + RLTR42-int LTR ERVK 1184 1380 -4142 1 1640 368 228 30 30 chr5 138404869 138405000 -14132259 - Lx9 LINE L1 -1 7643 7513 1 1640 405 0 0 0 chr5 138405011 138405056 -14132203 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 1 1640 760 229 25 0 chr5 138405057 138405214 -14132045 - Lx9 LINE L1 -179 7465 7305 1 1640 884 252 36 59 chr5 138405529 138405782 -14131477 + Lx6 LINE L1 7155 7401 -59 1 1640 825 252 56 9 chr5 138406335 138406550 -14130709 - B4 SINE B4 -1 291 81 1 1640 790 178 14 14 chr5 138406571 138406719 -14130540 + B1_Mur3 SINE Alu 1 148 -1 1 1640 244 200 92 23 chr5 138406745 138406832 -14130427 - Lx6 LINE L1 0 7460 7368 1 1640 773 274 70 9 chr5 138406878 138407092 -14130167 - Lx7 LINE L1 -376 7320 7094 1 1640 205 127 89 18 chr5 138407095 138407151 -14130108 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 1 1640 367 271 0 23 chr5 138407153 138407240 -14130019 - B4 SINE B4 -207 85 1 1 1640 1008 207 13 59 chr5 138408119 138408355 -14128904 + URR1B DNA MER1_type 1 225 0 1 1640 2663 166 83 19 chr5 138408402 138408874 -14128385 + Lx5 LINE L1 6549 7050 0 1 1640 222 37 0 0 chr5 138408874 138408901 -14128358 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1 1640 318 98 0 0 chr5 138409224 138409275 -14127984 + (TG)n Simple_repeat Simple_repeat 2 52 0 1 1640 1027 240 29 21 chr5 138409508 138409780 -14127479 + B4A SINE B4 2 274 -18 1 1640 2261 158 136 10 chr5 138409849 138410418 -14126841 + RLTR26 LTR ERVK 2 642 0 1 1640 1209 98 0 0 chr5 138410418 138410592 -14126667 + (GGGAGA)n Simple_repeat Simple_repeat 6 179 0 1 1640 241 243 14 0 chr5 138410608 138410678 -14126581 + (CA)n Simple_repeat Simple_repeat 2 72 0 1 1640 219 133 0 0 chr5 138410679 138410724 -14126535 + (CAGAGA)n Simple_repeat Simple_repeat 6 50 0 1 1640 469 127 0 19 chr5 138410741 138410845 -14126414 + (CA)n Simple_repeat Simple_repeat 2 103 0 1 1640 530 282 30 81 chr5 138410869 138410961 -14126298 + B4A SINE B4 8 89 -203 1 1640 653 179 0 0 chr5 138410961 138411067 -14126192 + B1_Mur4 SINE Alu 2 107 -43 1 1640 432 323 87 46 chr5 138411080 138411275 -14125984 + B4A SINE B4 82 284 -8 1 1640 288 172 0 0 chr5 138411311 138411369 -14125890 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1640 326 273 11 11 chr5 138411840 138411929 -14125330 + B1F1 SINE Alu 5 93 -56 1 1640 297 292 21 0 chr5 138411933 138412029 -14125230 + GA-rich Low_complexity Low_complexity 2 99 0 1 25 304 231 0 30 chr5 138412030 138412097 -14125162 + ID4 SINE ID 1 65 -18 1 1641 198 0 0 0 chr5 138412257 138412279 -14124980 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1 1641 1072 81 0 0 chr5 138412279 138412415 -14124844 - B1_Mus1 SINE Alu -12 136 1 1 1641 5131 57 12 8 chr5 138412431 138413085 -14124174 - L1Md_F2 LINE L1 -12 6570 5914 1 1641 11377 60 1 1 chr5 138413085 138414535 -14122724 + Lx2A1 LINE L1 4482 5937 -1071 1 1641 266 200 18 0 chr5 138415213 138415268 -14121991 - LTR40c LTR ERVL -351 114 59 1 1641 351 0 0 0 chr5 138415286 138415325 -14121934 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1641 324 0 0 0 chr5 138415325 138415360 -14121899 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1641 207 0 0 0 chr5 138415448 138415471 -14121788 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1641 378 0 0 0 chr5 138415471 138415512 -14121747 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1641 460 309 19 93 chr5 138415559 138415614 -14121645 - B4A SINE B4 -18 274 130 1 1641 717 182 7 28 chr5 138415614 138415755 -14121504 - B1_Mur1 SINE Alu -2 147 10 1 1641 300 257 8 110 chr5 138415667 138415785 -14121474 - MT2B LTR ERVL -350 251 146 1 1641 460 309 19 93 chr5 138415755 138415773 -14121486 - B4A SINE B4 -18 129 77 1 1641 316 234 164 44 chr5 138415769 138415975 -14121284 - B4A SINE B4 -68 224 1 1 1641 939 281 23 60 chr5 138416504 138416803 -14120456 + B4A SINE B4 5 292 0 1 1641 201 39 0 0 chr5 138416826 138416852 -14120407 + (CAGAGA)n Simple_repeat Simple_repeat 5 30 0 1 1641 371 283 20 20 chr5 138417234 138417335 -14119924 + B4A SINE B4 2 102 -190 1 1641 536 225 120 0 chr5 138417437 138417579 -14119680 - RSINE1 SINE B4 -4 161 3 1 1641 258 298 85 22 chr5 138417636 138417817 -14119442 + RSINE1 SINE B4 82 278 -14 1 1641 513 0 0 0 chr5 138417817 138417874 -14119385 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1641 658 220 11 0 chr5 138417875 138418052 -14119207 + GA-rich Low_complexity Low_complexity 1 179 0 1 1641 315 0 0 0 chr5 138418293 138418328 -14118931 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1641 664 206 9 0 chr5 138418369 138418507 -14118752 - B1_Mus2 SINE Alu -1 149 3 1 1641 289 325 0 13 chr5 138418440 138418518 -14118741 - B4 SINE B4 -139 153 77 1 1641 471 268 45 0 chr5 138418615 138418727 -14118532 + RSINE1 SINE B4 36 152 -13 1 1641 198 71 0 0 chr5 138418907 138418935 -14118324 + (T)n Simple_repeat Simple_repeat 1 28 0 1 1641 1501 265 65 105 chr5 138419138 138419902 -14117357 - RLTR22_Mur LTR ERVK -1099 749 16 1 1641 382 228 155 19 chr5 138420141 138420244 -14117015 + RSINE1 SINE B4 4 120 -45 1 1641 414 121 0 0 chr5 138420247 138420313 -14116946 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1641 450 290 51 6 chr5 138420631 138420787 -14116472 + RSINE1 SINE B4 3 165 0 1 1641 600 212 129 0 chr5 138420819 138420951 -14116308 + B1_Mur1 SINE Alu 1 149 0 1 1641 588 239 8 0 chr5 138420956 138421073 -14116186 + RSINE1 SINE B4 4 121 -44 1 1641 192 97 0 0 chr5 138421090 138421121 -14116138 + (CAGAGA)n Simple_repeat Simple_repeat 4 34 0 1 1641 211 172 29 29 chr5 138421145 138421247 -14116012 + (TAGA)n Simple_repeat Simple_repeat 2 103 0 1 1641 438 53 0 0 chr5 138421250 138421307 -14115952 + (CATA)n Simple_repeat Simple_repeat 2 58 0 1 1641 1334 281 41 6 chr5 138421320 138421685 -14115574 - MTEa LTR MaLR -1 378 1 1 1641 785 179 152 0 chr5 138422090 138422274 -14114985 + ID_B1 SINE B4 1 212 -12 1 1641 460 280 62 20 chr5 138423011 138423157 -14114102 + ID_B1 SINE B4 3 154 -70 1 1641 244 298 21 31 chr5 138423092 138423192 -14114067 + B1F SINE Alu 12 110 -7 1 1641 801 228 47 16 chr5 138423828 138424000 -14113259 + B3A SINE B2 1 181 -17 1 1641 234 0 0 0 chr5 138424000 138424026 -14113233 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1641 801 228 47 16 chr5 138424026 138424045 -14113214 + B3A SINE B2 182 197 -1 1 1641 221 0 35 0 chr5 138424131 138424160 -14113099 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 1 1641 1523 175 118 35 chr5 138424223 138424530 -14112729 - MTB_Mm LTR MaLR 0 407 80 1 1641 1130 45 0 0 chr5 138424530 138424663 -14112596 - B1_Mus2 SINE Alu -13 134 2 1 1641 1523 175 118 35 chr5 138424663 138424677 -14112582 - MTB_Mm LTR MaLR -328 79 55 1 1641 5321 130 84 12 chr5 138424677 138425571 -14111688 - RMER17B LTR ERVK 0 958 1 1 1641 1523 175 118 35 chr5 138425571 138425621 -14111638 - MTB_Mm LTR MaLR -353 54 5 1 1641 644 24 12 0 chr5 138425621 138425703 -14111556 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 1 1641 352 301 0 31 chr5 138425703 138425799 -14111460 + B4A SINE B4 137 229 -63 1 1641 567 299 51 19 chr5 138425801 138425958 -14111301 + RSINE1 SINE B4 4 165 0 1 1641 240 230 67 13 chr5 138425965 138426040 -14111219 + B4A SINE B4 214 292 0 1 1641 396 40 0 0 chr5 138426061 138426111 -14111148 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1641 390 42 0 0 chr5 138426690 138426738 -14110521 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1641 1024 173 112 19 chr5 138426803 138427009 -14110250 + URR1A DNA MER1_type 1 225 -1 1 1641 22 0 0 0 chr5 138427269 138427291 -14109968 + AT_rich Low_complexity Low_complexity 1 22 0 1 1641 1197 49 0 0 chr5 138427469 138427613 -14109646 + B1_Mus1 SINE Alu 2 145 -3 1 1641 243 0 0 0 chr5 138427613 138427640 -14109619 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1641 572 205 57 0 chr5 138427870 138427992 -14109267 + B1F SINE Alu 12 140 -9 1 1641 231 36 0 0 chr5 138427993 138428021 -14109238 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1 1641 671 235 94 11 chr5 138428246 138428427 -14108832 + ID_B1 SINE B4 28 223 -1 1 1641 1265 127 6 0 chr5 138429136 138429296 -14107963 + ZP3AR Satellite Satellite 1 214 0 1 1641 302 260 73 142 chr5 138429296 138429349 -14107910 + ID SINE ID 1 48 -176 1 1641 366 268 12 0 chr5 138429349 138429431 -14107828 + ID4 SINE ID 1 83 0 1 1641 302 260 73 142 chr5 138429431 138429490 -14107769 + ID_B1 SINE B4 49 217 -7 1 1641 348 225 117 75 chr5 138429490 138429610 -14107649 + B1F SINE Alu 18 142 -7 1 1641 348 247 94 0 chr5 138429812 138429897 -14107362 + ID_B1 SINE B4 80 172 -52 1 1641 235 182 36 0 chr5 138429913 138429968 -14107291 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1 1641 518 123 34 23 chr5 138429995 138430170 -14107089 + (TATG)n Simple_repeat Simple_repeat 2 178 0 1 1641 358 151 9 36 chr5 138430192 138430302 -14106957 + (TATG)n Simple_repeat Simple_repeat 4 110 0 1 1641 493 304 199 12 chr5 138430307 138430553 -14106706 - B4A SINE B4 0 292 1 1 1641 359 202 59 20 chr5 138431466 138431563 -14105696 - MTE2a LTR MaLR 0 379 279 1 1641 440 265 38 8 chr5 138431563 138431696 -14105563 - RMER15 LTR ERVL -2 573 437 1 1641 2519 70 6 0 chr5 138432055 138432398 -14104861 - MTA_Mm LTR MaLR -51 345 1 1 1641 402 240 82 18 chr5 138432398 138432550 -14104709 - RLTR12B LTR ERVK -390 178 23 1 1641 1595 219 58 22 chr5 138432547 138432962 -14104297 - RMER15 LTR ERVL -119 456 27 1 1641 1050 151 102 0 chr5 138432975 138433180 -14104079 + URR1A DNA MER1_type 1 226 0 1 1641 1014 218 38 135 chr5 138433270 138433588 -14103671 - MTE2a LTR MaLR -90 289 3 1 1641 1332 96 32 0 chr5 138433589 138433777 -14103482 + B2_Mm2 SINE B2 1 194 -1 1 1641 514 243 19 0 chr5 138433794 138433901 -14103358 + RSINE1 SINE B4 1 109 -56 1 1641 1484 17 11 0 chr5 138433920 138434098 -14103161 + (TCTCCC)n Simple_repeat Simple_repeat 1 180 0 1 1641 398 155 0 10 chr5 138434106 138434204 -14103055 + CT-rich Low_complexity Low_complexity 2 98 0 1 1641 1140 233 0 5 chr5 138434763 138434979 -14102280 - B3 SINE B2 0 216 2 1 1641 515 194 10 0 chr5 138435166 138435264 -14101995 + B1_Mur1 SINE Alu 51 149 0 1 1641 298 219 0 47 chr5 138435268 138435356 -14101903 + A-rich Low_complexity Low_complexity 1 82 0 1 1641 1161 82 7 0 chr5 138435356 138435503 -14101756 + B1_Mus1 SINE Alu 1 148 0 1 1641 298 219 0 47 chr5 138435503 138435543 -14101716 + A-rich Low_complexity Low_complexity 83 122 0 1 1641 949 157 14 0 chr5 138435997 138436144 -14101115 + B1_Mur4 SINE Alu 1 149 -1 1 1641 428 275 149 6 chr5 138436188 138436349 -14100910 + ID_B1 SINE B4 21 204 -20 1 1641 267 79 0 0 chr5 138436369 138436407 -14100852 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 1 1641 339 25 0 0 chr5 138436980 138437020 -14100239 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1641 639 244 0 0 chr5 138437081 138437200 -14100059 - B3 SINE B2 -96 120 2 1 1641 801 190 74 76 chr5 138437205 138437567 -14099692 + RLTRETN_Mm LTR ERVK 1 409 0 1 1641 4129 152 17 129 chr5 138437568 138438572 -14098687 + MMETn-int LTR ERVK 1 891 -3953 1 1641 499 202 127 16 chr5 138438561 138438687 -14098572 + MMETn-int LTR ERVK 1949 2088 -5318 1 1641 2880 130 42 44 chr5 138438709 138439479 -14097780 + MMETn-int LTR ERVK 1721 3135 -4271 1 1641 3884 142 22 5 chr5 138439996 138440627 -14096632 + MMETn-int LTR ERVK 3443 4084 -3322 1 1641 3599 13 2 0 chr5 138440627 138441022 -14096237 + MTA_Mm LTR MaLR 1 396 0 1 1641 9483 25 4 1 chr5 138441022 138442117 -14095142 + MTA_Mm-int LTR MaLR 1 1098 0 1 1641 3599 13 2 0 chr5 138442117 138442512 -14094747 + MTA_Mm LTR MaLR 1 396 0 1 1641 4853 149 27 32 chr5 138442512 138443565 -14093694 + MMETn-int LTR ERVK 2356 3400 -2006 1 1641 265 117 45 90 chr5 138443595 138443662 -14093597 + RLTR10A LTR ERVK 291 398 -13 1 1641 1802 128 13 29 chr5 138443662 138443969 -14093290 + ETnERV2-int LTR ERVK 5774 6075 -1331 1 1641 872 127 8 16 chr5 138443981 138444109 -14093150 + ETnERV2-int LTR ERVK 6227 6353 -1053 1 1641 316 56 19 0 chr5 138444118 138444172 -14093087 - L1Md_F2 LINE L1 0 6582 6528 1 1641 459 233 164 39 chr5 138444173 138444405 -14092854 - RLTR10A LTR ERVK -4 407 147 1 1641 10277 45 2 2 chr5 138444461 138446401 -14090858 - L1Md_F2 LINE L1 -46 6536 4598 1 1641 6504 106 6 0 chr5 138446410 138447239 -14090020 + ETnERV2-int LTR ERVK 6370 7203 -203 1 1641 646 219 241 53 chr5 138447239 138447460 -14089799 + RLTR13D6 LTR ERVK 154 407 -495 1 1641 3730 44 5 0 chr5 138447460 138447894 -14089365 - RLTR10C LTR ERVK 0 436 1 1 1641 646 219 241 53 chr5 138447894 138447995 -14089264 + RLTR13D6 LTR ERVK 408 537 -365 1 1641 505 67 25 74 chr5 138447995 138448076 -14089183 + ETnERV2-int LTR ERVK 7329 7405 -1 1 1641 978 183 58 72 chr5 138448076 138448440 -14088819 + RLTRETN_Mm LTR ERVK 1 409 0 1 1641 1252 168 5 18 chr5 138448440 138448664 -14088595 + URR1A DNA MER1_type 1 221 -5 1 1641 186 43 0 0 chr5 138448698 138448721 -14088538 + (TTGG)n Simple_repeat Simple_repeat 2 24 0 1 1641 756 204 0 0 chr5 138448721 138448863 -14088396 - B1_Mur4 SINE Alu -8 142 1 1 1641 236 213 0 62 chr5 138448913 138448978 -14088281 + Lx6 LINE L1 7400 7460 0 1 1641 1191 230 42 149 chr5 138449051 138449475 -14087784 + MTEa LTR MaLR 1 379 0 1 1641 3432 53 0 34 chr5 138449606 138450054 -14087205 - L1_Mus1 LINE L1 -490 6077 5645 1 1641 4172 47 4 12 chr5 138450054 138450567 -14086692 + L1_Mus1 LINE L1 6059 6567 0 1 1641 2933 160 39 62 chr5 138450789 138451374 -14085885 - RMER15 LTR ERVL -3 572 1 1 1641 180 177 31 31 chr5 138451682 138451746 -14085513 + (TGG)n Simple_repeat Simple_repeat 1 64 0 1 1641 270 0 0 0 chr5 138451768 138451798 -14085461 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1 1641 301 208 0 105 chr5 138451928 138451942 -14085317 - ID_B1 SINE B4 -57 167 159 1 1641 1343 142 135 68 chr5 138451942 138452326 -14084933 + RMER17C LTR ERVK 1 410 0 1 1641 301 208 0 105 chr5 138452326 138452397 -14084862 - ID_B1 SINE B4 -66 158 91 1 1641 284 257 156 0 chr5 138452398 138452507 -14084752 - L1MA7 LINE L1 -172 6119 5994 1 1641 1789 162 27 87 chr5 138452676 138453088 -14084171 - RLTR41 LTR ERV1 0 446 60 1 1641 578 275 59 21 chr5 138453235 138453473 -14083786 - MURVY-int LTR ERV1 -70 7382 7136 1 1641 1031 324 62 18 chr5 138453762 138454265 -14082994 - MuRRS4-int LTR ERV1 -2425 2638 2114 1 1641 257 241 0 0 chr5 138454283 138454337 -14082922 - MuLV-int LTR ERV1 -4345 3261 3208 1 1641 308 240 26 13 chr5 138454361 138454437 -14082822 - MuRRS4-int LTR ERV1 -3783 1534 1458 1 1641 693 323 66 16 chr5 138454708 138454749 -14082510 - MuRRS4-int LTR ERV1 -3321 1742 1699 1 1641 987 156 0 0 chr5 138454749 138454928 -14082331 + CT-rich Low_complexity Low_complexity 2 180 0 1 1641 693 323 66 16 chr5 138454928 138455311 -14081948 - MuRRS4-int LTR ERV1 -3365 1698 1297 1 1641 303 141 50 0 chr5 138455357 138455456 -14081803 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 1 1641 409 229 48 0 chr5 138455471 138455576 -14081683 - L1MB3 LINE L1 -259 5924 5815 1 1641 601 261 58 74 chr5 138455591 138455781 -14081478 - B3A SINE B2 -11 187 1 1 1641 647 256 96 14 chr5 138455860 138456078 -14081181 - MTD LTR MaLR 0 419 184 1 1641 491 0 17 0 chr5 138456078 138456137 -14081122 + (CATA)n Simple_repeat Simple_repeat 4 63 0 1 1641 218 314 114 0 chr5 138456210 138456280 -14080979 + B4 SINE B4 9 86 -206 1 1641 1288 123 11 0 chr5 138456290 138456477 -14080782 + B2_Mm1t SINE B2 1 189 -4 1 1641 22 0 0 0 chr5 138456508 138456530 -14080729 + AT_rich Low_complexity Low_complexity 1 22 0 1 1641 317 115 0 0 chr5 138456566 138456618 -14080641 + B2_Mm2 SINE B2 47 98 -97 1 1641 1503 63 11 0 chr5 138456669 138456860 -14080399 + B2_Mm1t SINE B2 1 193 0 1 1641 689 63 0 10 chr5 138456880 138456976 -14080283 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1 1641 428 178 269 8 chr5 138456977 138457096 -14080163 + B1_Mur4 SINE Alu 1 150 0 1 1641 661 287 46 31 chr5 138457123 138457317 -14079942 + B4 SINE B4 85 281 -11 1 1641 388 256 0 11 chr5 138457343 138457430 -14079829 + PB1D10 SINE Alu 1 86 -31 1 1641 262 250 40 30 chr5 138458265 138458364 -14078895 - RMER15 LTR ERVL -96 479 380 1 1641 360 0 0 0 chr5 138458564 138458604 -14078655 + (TC)n Simple_repeat Simple_repeat 2 41 0 1 1641 261 0 0 0 chr5 138458608 138458637 -14078622 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1641 980 87 7 0 chr5 138459996 138460145 -14077114 - L1Md_F2 LINE L1 -3 6579 6430 1 1641 238 226 19 0 chr5 138461224 138461277 -14075982 + GA-rich Low_complexity Low_complexity 1 54 0 1 1641 233 330 132 73 chr5 138461359 138461578 -14075681 - B4 SINE B4 -60 232 1 1 1641 785 274 145 68 chr5 138461686 138462140 -14075119 - RLTR19 LTR ERVK -1 498 10 1 1641 336 64 0 0 chr5 138462600 138462647 -14074612 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1641 356 312 7 0 chr5 138462710 138462854 -14074405 + (TG)n Simple_repeat Simple_repeat 2 146 0 1 1641 8020 146 39 32 chr5 138462947 138465028 -14072231 - Lx5 LINE L1 0 7050 4958 1 1641 660 168 8 15 chr5 138465166 138465299 -14071960 - B1_Mus2 SINE Alu -5 142 11 1 1641 39311 57 6 4 chr5 138465501 138471967 -14065292 - L1Md_T LINE L1 0 6582 98 1 1641 1061 109 7 0 chr5 138471987 138472134 -14065125 - B1_Mus1 SINE Alu 0 148 1 1 1641 1359 264 145 78 chr5 138472159 138472771 -14064488 - Lx8 LINE L1 -4 7469 6817 1 1641 350 271 99 40 chr5 138472802 138473106 -14064153 - L1_Rod LINE L1 -335 5545 5193 1 1641 183 42 0 0 chr5 138473154 138473178 -14064081 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1641 966 118 0 0 chr5 138473180 138473315 -14063944 - B1_Mus2 SINE Alu -12 135 1 1 1641 205 302 15 44 chr5 138473424 138473559 -14063700 + T-rich Low_complexity Low_complexity 2 132 0 1 1641 201 283 0 57 chr5 138475372 138475477 -14061782 + GA-rich Low_complexity Low_complexity 3 101 0 1 1641 980 87 7 0 chr5 138475951 138476100 -14061159 - L1Md_F2 LINE L1 -3 6579 6430 1 1641 199 203 31 0 chr5 138477179 138477243 -14060016 + GA-rich Low_complexity Low_complexity 1 66 0 1 1641 256 327 124 82 chr5 138477311 138477544 -14059715 - B4 SINE B4 -49 243 1 1 1641 867 293 124 44 chr5 138477652 138478105 -14059154 - RLTR19 LTR ERVK -1 498 10 1 1641 390 57 0 0 chr5 138478563 138478616 -14058643 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1641 331 319 7 0 chr5 138478679 138478823 -14058436 + (TG)n Simple_repeat Simple_repeat 2 146 0 1 1641 8020 146 39 32 chr5 138478918 138480999 -14056260 - Lx5 LINE L1 0 7050 4958 1 1641 660 168 8 15 chr5 138481137 138481270 -14055989 - B1_Mus2 SINE Alu -5 142 11 1 1641 39311 57 6 4 chr5 138481472 138487938 -14049321 - L1Md_T LINE L1 0 6582 98 1 1641 1061 109 7 0 chr5 138487958 138488105 -14049154 - B1_Mus1 SINE Alu 0 148 1 1 1641 1359 264 145 78 chr5 138488130 138488742 -14048517 - Lx8 LINE L1 -4 7469 6817 1 1641 350 271 99 40 chr5 138488773 138489077 -14048182 - L1_Rod LINE L1 -335 5545 5193 1 1641 183 42 0 0 chr5 138489125 138489149 -14048110 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1641 966 118 0 0 chr5 138489151 138489286 -14047973 - B1_Mus2 SINE Alu -12 135 1 1 1641 205 302 15 44 chr5 138489395 138489530 -14047729 + T-rich Low_complexity Low_complexity 2 132 0 1 1641 201 283 0 57 chr5 138491343 138491448 -14045811 + GA-rich Low_complexity Low_complexity 3 101 0 1 1641 980 87 7 0 chr5 138491922 138492071 -14045188 - L1Md_F2 LINE L1 -3 6579 6430 1 1641 199 203 31 0 chr5 138493150 138493214 -14044045 + GA-rich Low_complexity Low_complexity 1 66 0 1 1641 256 327 124 82 chr5 138493282 138493515 -14043744 - B4 SINE B4 -49 243 1 1 1641 867 293 124 44 chr5 138493623 138494076 -14043183 - RLTR19 LTR ERVK -1 498 10 1 1641 390 57 0 0 chr5 138494534 138494587 -14042672 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1641 331 319 7 0 chr5 138494650 138494794 -14042465 + (TG)n Simple_repeat Simple_repeat 2 146 0 1 1641 8020 145 39 32 chr5 138494889 138496970 -14040289 - Lx5 LINE L1 0 7050 4958 1 1641 660 168 8 15 chr5 138497108 138497241 -14040018 - B1_Mus2 SINE Alu -5 142 11 1 1641 16445 27 7 0 chr5 138497443 138500000 -14037259 - L1Md_T LINE L1 0 6582 4001 1 1641 23853 29 3 11 chr5 138500000 138503659 -14033600 - L1Md_A LINE L1 -1883 4000 376 1 1641 328 132 22 11 chr5 138503727 138503819 -14033440 + T-rich Low_complexity Low_complexity 3 95 0 2 1641 1029 103 14 0 chr5 138503820 138503965 -14033294 - B1_Mus1 SINE Alu -1 147 1 3 1641 1385 264 144 77 chr5 138503990 138504602 -14032657 - Lx8 LINE L1 -4 7469 6817 4 1641 312 259 180 46 chr5 138504643 138504796 -14032463 - L1_Rod LINE L1 -345 5535 5333 5 1641 411 21 0 0 chr5 138504796 138504844 -14032415 + (TA)n Simple_repeat Simple_repeat 2 49 0 6 1641 312 249 211 54 chr5 138504844 138504974 -14032285 - L1_Rod LINE L1 -515 5332 5194 5 1641 183 42 0 0 chr5 138505022 138505046 -14032213 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1641 897 157 0 0 chr5 138505049 138505183 -14032076 - B1_Mus2 SINE Alu -13 134 1 8 1641 224 288 37 15 chr5 138505292 138505426 -14031833 + T-rich Low_complexity Low_complexity 2 138 0 9 1641 209 317 19 19 chr5 138507250 138507353 -14029906 + G-rich Low_complexity Low_complexity 2 104 0 1 1641 1024 92 0 0 chr5 138507825 138507978 -14029281 - L1Md_F2 LINE L1 0 6582 6430 1 1641 3831 7 121 0 chr5 138508739 138509179 -14028080 + MT2_Mm LTR ERVL 1 493 0 1 1641 48838 16 0 0 chr5 138509179 138514538 -14022721 + MERVL-int LTR ERVL 1 5360 -125 1 1641 351 179 46 35 chr5 138514538 138514625 -14022634 + ORR1A3-int LTR MaLR 553 640 -1323 1 1641 321 0 0 0 chr5 138514625 138514663 -14022596 + MERVL-int LTR ERVL 5448 5485 0 1 1641 3831 7 121 0 chr5 138514663 138515103 -14022156 + MT2_Mm LTR ERVL 1 493 0 1 1641 281 26 26 0 chr5 138515432 138515470 -14021789 + (GA)n Simple_repeat Simple_repeat 1 39 0 1 1641 2118 32 0 0 chr5 138515493 138515740 -14021519 + L1Md_A LINE L1 6334 6580 -2 1 1641 287 276 0 87 chr5 138515850 138515977 -14021282 - L1M2 LINE L1 -550 5741 5626 1 1641 308 299 81 43 chr5 138516019 138516253 -14021006 + L1MA9 LINE L1 5823 6065 -247 1 1641 608 250 29 11 chr5 138516269 138516443 -14020816 + MT2A LTR ERVL 1 177 -356 1 1641 681 13 0 0 chr5 138516455 138516533 -14020726 + (GGGA)n Simple_repeat Simple_repeat 2 79 0 1 1641 374 0 22 0 chr5 138516621 138516667 -14020592 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 1641 354 23 0 0 chr5 138516671 138516714 -14020545 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1641 446 281 129 7 chr5 138516976 138517116 -14020143 + RCHARR1 DNA MER1_type 20 176 -798 2 1641 373 264 47 16 chr5 138517104 138517231 -14020028 + MTEb LTR MaLR 249 379 0 2 1641 184 355 11 11 chr5 138517527 138517621 -14019638 + MIRc SINE MIR 50 143 -125 2 1641 192 273 0 0 chr5 138517742 138517808 -14019451 + CT-rich Low_complexity Low_complexity 3 68 0 2 1641 439 229 10 10 chr5 138517815 138517912 -14019347 - B1_Mur1 SINE Alu 0 149 53 2 1641 262 264 170 24 chr5 138518053 138518162 -14019097 - B1F SINE Alu -12 137 9 2 1641 225 309 96 0 chr5 138518183 138518277 -14018982 - ID_B1 SINE B4 -1 223 121 2 1641 350 88 271 150 chr5 138518273 138518406 -14018853 - B2_Mm2 SINE B2 0 195 47 2 1641 1192 80 6 44 chr5 138518433 138518447 -14018812 - B2_Mm2 SINE B2 -13 182 170 3 1641 1488 53 5 5 chr5 138518447 138518635 -14018624 - B2_Mm1a SINE B2 -5 188 1 3 1641 742 99 306 41 chr5 138518635 138518782 -14018477 - B2_Mm2 SINE B2 -9 186 1 3 1641 1192 80 6 44 chr5 138518782 138518949 -14018310 - B2_Mm2 SINE B2 -26 169 8 3 1641 695 225 12 20 chr5 138519013 138519082 -14018177 - ID_B1 SINE B4 -46 246 87 3 1641 343 269 0 41 chr5 138519082 138519179 -14018080 - PB1D10 SINE Alu -23 94 2 3 1641 257 211 75 43 chr5 138519199 138519293 -14017966 - B4 SINE B4 0 292 196 3 1641 380 222 12 12 chr5 138519344 138519426 -14017833 - B4 SINE B4 -210 82 1 3 1641 2167 82 16 0 chr5 138519731 138520047 -14017212 - ORR1A4 LTR MaLR -8 321 1 3 1641 234 0 0 0 chr5 138520123 138520149 -14017110 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1641 262 119 24 0 chr5 138520485 138520527 -14016732 - CR1_Mam LINE CR1 -1249 955 913 3 1641 1572 143 12 12 chr5 138520685 138520940 -14016319 + Lx4A LINE L1 6798 7052 -6 3 1641 3059 62 26 0 chr5 138520978 138521368 -14015891 - MTB LTR MaLR 0 400 1 4 1641 550 285 22 0 chr5 138521472 138521609 -14015650 - RSINE1 SINE B4 -13 152 13 4 1641 1130 75 0 7 chr5 138521990 138522137 -14015122 + B1_Mus2 SINE Alu 1 146 -1 4 1641 201 176 0 0 chr5 138522138 138522172 -14015087 + A-rich Low_complexity Low_complexity 1 34 0 4 1641 273 198 207 45 chr5 138522172 138522279 -14014980 - MTC LTR MaLR -44 375 251 4 1641 3278 142 238 3 chr5 138522279 138523012 -14014247 + RMER13B LTR ERVK 3 908 0 4 1641 323 225 38 0 chr5 138523087 138523167 -14014092 - MTC LTR MaLR -210 211 129 4 1641 523 198 11 98 chr5 138523143 138523185 -14014074 + ID_B1 SINE B4 56 214 -10 4 1641 1022 38 0 0 chr5 138523185 138523317 -14013942 + B1_Mus1 SINE Alu 7 138 -10 4 1641 234 0 0 0 chr5 138523318 138523344 -14013915 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 4 1641 293 279 0 0 chr5 138523347 138523426 -14013833 - MTC LTR MaLR -322 97 19 4 1641 671 232 27 38 chr5 138523505 138523689 -14013570 - B3A SINE B2 -16 182 1 4 1641 236 217 16 48 chr5 138523694 138523757 -14013502 - PB1 SINE Alu -21 106 46 5 1641 596 72 40 40 chr5 138523825 138523926 -14013333 + B1_Mur4 SINE Alu 49 149 -1 5 1641 682 112 0 9 chr5 138523968 138524076 -14013183 + B1_Mur4 SINE Alu 23 129 -21 5 1641 348 277 49 106 chr5 138523972 138524183 -14013076 + B4 SINE B4 85 281 -11 5 1641 180 231 0 0 chr5 138524205 138524257 -14013002 + GA-rich Low_complexity Low_complexity 4 55 0 5 1641 231 88 0 0 chr5 138524258 138524292 -14012967 + (TTA)n Simple_repeat Simple_repeat 1 34 0 5 1641 713 112 30 60 chr5 138524433 138524566 -14012693 + B1_Mur4 SINE Alu 22 150 0 5 1641 2298 141 36 13 chr5 138525155 138525544 -14011715 + RMER10B LTR ERVL 1 398 0 5 1641 21 36 0 0 chr5 138525580 138525608 -14011651 + AT_rich Low_complexity Low_complexity 1 28 0 5 1641 580 292 9 73 chr5 138528426 138528644 -14008615 - ID_B1 SINE B4 -19 205 2 5 1641 397 277 47 0 chr5 138528915 138528944 -14008315 - PB1D10 SINE Alu -28 121 1 6 1641 420 261 0 0 chr5 138528944 138529032 -14008227 - ID_B1 SINE B4 -55 169 82 6 1641 356 272 0 32 chr5 138529036 138529131 -14008128 - ID_B1 SINE B4 -3 221 130 6 1641 1186 241 37 4 chr5 138529228 138529499 -14007760 + B4A SINE B4 12 291 -1 6 1641 212 368 32 26 chr5 138529522 138529678 -14007581 + MIRb SINE MIR 25 181 -87 6 1641 847 171 25 0 chr5 138530072 138530149 -14007110 + ID SINE ID 4 84 -140 6 1641 449 238 0 62 chr5 138530149 138530261 -14006998 + PB1D10 SINE Alu 4 108 -9 6 1641 385 311 73 15 chr5 138530819 138530956 -14006303 + RSINE1 SINE B4 3 147 -18 6 1641 24 32 0 0 chr5 138530977 138531008 -14006251 + AT_rich Low_complexity Low_complexity 1 31 0 6 1641 1782 171 206 7 chr5 138531067 138531527 -14005732 - RMER4B LTR ERVK -3 582 31 6 1641 927 40 0 8 chr5 138531521 138531647 -14005612 + B1_Mus2 SINE Alu 23 147 0 7 1641 788 159 35 47 chr5 138531650 138531821 -14005438 - B2_Mm2 SINE B2 -26 169 1 7 1641 276 67 44 0 chr5 138531823 138531868 -14005391 - RMER4B LTR ERVK -538 47 1 6 1641 519 213 132 0 chr5 138532163 138532299 -14004960 - RSINE1 SINE B4 -10 155 2 7 1641 1004 74 0 75 chr5 138532585 138532745 -14004514 + L1_Mus1 LINE L1 6418 6565 -2 7 1641 22 35 0 0 chr5 138532804 138532833 -14004426 + AT_rich Low_complexity Low_complexity 1 29 0 7 1641 1400 91 5 0 chr5 138532835 138533021 -14004238 - B2_Mm1t SINE B2 -5 188 2 7 1641 1372 93 6 0 chr5 138533022 138533205 -14004054 - B2_Mm1a SINE B2 -8 185 2 7 1641 248 207 17 0 chr5 138533273 138533331 -14003928 - RSINE1 SINE B4 -105 60 2 7 1641 445 240 198 0 chr5 138533446 138533567 -14003692 + RSINE1 SINE B4 5 149 -16 7 1641 235 156 43 86 chr5 138533606 138533676 -14003583 - Charlie7 DNA MER1_type -628 1984 1918 7 1641 371 274 114 30 chr5 138533970 138534102 -14003157 - B4 SINE B4 -24 268 126 8 1641 1064 72 50 0 chr5 138534934 138535073 -14002186 + B1_Mus2 SINE Alu 2 147 0 8 1641 320 311 9 55 chr5 138535103 138535212 -14002047 + PB1D10 SINE Alu 2 105 -12 8 1641 563 265 63 29 chr5 138535413 138535619 -14001640 + ID_B1 SINE B4 10 222 -2 8 1641 715 196 7 20 chr5 138535478 138535624 -14001635 + B1_Mur2 SINE Alu 6 149 0 8 1641 389 253 66 0 chr5 138535626 138535717 -14001542 + ID_B1 SINE B4 98 194 -30 8 1641 492 239 27 9 chr5 138536028 138536138 -14001121 - PB1D7 SINE Alu -8 112 1 8 1641 884 94 7 21 chr5 138536241 138536382 -14000877 - B1_Mus2 SINE Alu 0 147 9 8 1641 219 208 292 0 chr5 138536612 138536684 -14000575 + B3A SINE B2 15 107 -91 8 1641 589 49 0 0 chr5 138536775 138536856 -14000403 + L1_Mus3 LINE L1 6546 6626 -12 8 1641 240 35 0 0 chr5 138536871 138536900 -14000359 + (GA)n Simple_repeat Simple_repeat 2 30 0 9 1641 490 234 70 76 chr5 138537992 138538004 -13999255 - B4 SINE B4 -64 228 218 9 1641 231 61 0 0 chr5 138538004 138538037 -13999222 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 9 1641 490 234 70 76 chr5 138538037 138538056 -13999203 - B4 SINE B4 -75 217 163 9 1641 789 47 0 0 chr5 138538056 138538162 -13999097 - B1_Mus1 SINE Alu -42 106 1 9 1641 490 234 70 76 chr5 138538162 138538195 -13999064 - B4 SINE B4 -75 162 59 9 1641 315 0 0 0 chr5 138538841 138538876 -13998383 + (T)n Simple_repeat Simple_repeat 1 35 0 9 1641 241 221 72 14 chr5 138539910 138539979 -13997280 + B4A SINE B4 2 74 -218 9 1641 264 100 0 0 chr5 138540043 138540083 -13997176 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1641 784 88 0 26 chr5 138540141 138540258 -13997001 + B1_Mus1 SINE Alu 26 139 -9 9 1641 733 211 66 66 chr5 138540286 138540484 -13996775 + B3 SINE B2 9 206 -10 9 1641 502 237 0 48 chr5 138540504 138540628 -13996631 - PB1D9 SINE Alu 0 120 3 9 1641 377 250 23 0 chr5 138541098 138541186 -13996073 - PB1D9 SINE Alu -7 113 24 1 1641 788 168 35 0 chr5 138541202 138541345 -13995914 - B1F2 SINE Alu -1 148 1 1 1641 313 212 49 74 chr5 138541489 138541611 -13995648 - PB1D7 SINE Alu 0 120 2 1 1641 463 256 37 37 chr5 138542132 138542589 -13994670 + MMSAT4 Satellite Satellite 1 457 0 1 1642 210 238 0 0 chr5 138543996 138544059 -13993200 + T-rich Low_complexity Low_complexity 1 63 0 1 1642 231 61 0 0 chr5 138544931 138544964 -13992295 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1 1642 741 250 18 0 chr5 138546829 138546993 -13990266 + ID_B1 SINE B4 58 224 0 1 1642 245 297 0 63 chr5 138546999 138547024 -13990235 + B4 SINE B4 66 85 -207 1 1642 331 248 54 0 chr5 138547024 138547110 -13990149 + PB1D10 SINE Alu 1 92 -55 1 1642 264 293 65 109 chr5 138548428 138548566 -13988693 + ZP3AR Satellite Satellite 21 152 -60 1 1642 252 182 134 15 chr5 138548567 138548634 -13988625 + ID4_ SINE ID 2 76 -7 1 1642 723 244 66 20 chr5 138549208 138549405 -13987854 + ID_B1 SINE B4 3 208 -16 1 1642 321 231 88 0 chr5 138549597 138549688 -13987571 + B4 SINE B4 2 100 -192 1 1642 352 321 155 18 chr5 138549959 138550127 -13987132 + B3A SINE B2 6 196 -2 1 1642 243 103 0 0 chr5 138550335 138550374 -13986885 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1642 594 240 52 1 chr5 138550376 138550533 -13986726 + B3A SINE B2 6 167 -31 1 1642 330 26 0 0 chr5 138550533 138550572 -13986687 + (CATA)n Simple_repeat Simple_repeat 4 42 0 1 1642 363 246 79 79 chr5 138550572 138550604 -13986655 + B2_Mm2 SINE B2 162 195 0 1 1642 350 267 89 22 chr5 138550614 138550733 -13986526 + B1F2 SINE Alu 19 141 -8 1 1642 552 296 96 43 chr5 138550802 138551032 -13986227 - MER21B LTR ERV1 -137 726 485 1 1642 1410 71 27 0 chr5 138551145 138551328 -13985931 + B2_Mm2 SINE B2 1 188 -7 1 1642 1256 100 22 0 chr5 138551359 138551539 -13985720 + B2_Mm1a SINE B2 1 184 -9 1 1642 445 189 130 20 chr5 138551539 138551675 -13985584 + RMER4B LTR ERVK 26 179 -287 1 1642 591 229 198 68 chr5 138551736 138551999 -13985260 + RMER4B LTR ERVK 285 581 -4 1 1642 723 226 19 0 chr5 138552006 138552161 -13985098 + B3 SINE B2 53 210 -6 1 1642 1023 59 7 22 chr5 138552181 138552320 -13984939 + B1_Mus2 SINE Alu 1 137 -10 1 1642 1513 189 153 6 chr5 138552345 138552711 -13984548 - MTC LTR MaLR 0 421 2 1 1642 210 105 0 0 chr5 138552931 138552969 -13984290 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 1 1642 1135 58 19 0 chr5 138552975 138553131 -13984128 + B2_Mm2 SINE B2 3 161 -34 1 1642 351 0 0 0 chr5 138553131 138553170 -13984089 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1 1642 397 118 38 50 chr5 138553182 138553262 -13983997 + PB1D9 SINE Alu 2 80 -40 1 1642 303 49 0 0 chr5 138553263 138553304 -13983955 + (GA)n Simple_repeat Simple_repeat 1 41 0 1 1642 250 290 43 0 chr5 138553352 138553445 -13983814 + PB1D10 SINE Alu 5 101 -16 1 1642 263 222 13 40 chr5 138553465 138553540 -13983719 + GA-rich Low_complexity Low_complexity 1 73 0 1 1642 351 0 0 0 chr5 138553760 138553799 -13983460 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1642 333 306 55 55 chr5 138553807 138553935 -13983324 - RSINE1 SINE B4 -34 131 4 1 1642 263 265 50 30 chr5 138554060 138554161 -13983098 - B4A SINE B4 0 292 190 1 1642 306 288 0 46 chr5 138554277 138554386 -13982873 + PB1D10 SINE Alu 6 109 -8 1 1642 650 329 59 0 chr5 138554503 138554740 -13982519 + MTE2b LTR MaLR 1 251 -128 1 1642 642 179 89 7 chr5 138554761 138554896 -13982363 + B1_Mur4 SINE Alu 3 148 -2 1 1642 402 99 19 10 chr5 138554943 138555019 -13982240 + MTE2b LTR MaLR 297 379 0 1 1642 342 0 0 0 chr5 138555157 138555195 -13982064 + (TC)n Simple_repeat Simple_repeat 1 38 0 1 1642 403 299 34 123 chr5 138555293 138555484 -13981775 - B4A SINE B4 -77 215 41 1 1642 1577 215 79 3 chr5 138555484 138555824 -13981435 + ORR1D2 LTR MaLR 2 367 -3 1 1642 403 299 34 123 chr5 138555824 138555868 -13981391 - B4A SINE B4 -252 40 1 1 1642 1181 97 45 6 chr5 138556172 138556349 -13980910 - B2_Mm2 SINE B2 -9 186 3 1 1642 491 301 73 0 chr5 138556368 138556504 -13980755 - ID_B1 SINE B4 0 224 79 1 1642 2862 91 70 224 chr5 138556780 138557471 -13979788 + MT2B2 LTR ERVL 1 584 0 1 1642 812 245 175 12 chr5 138557486 138557726 -13979533 - B4A SINE B4 -3 289 11 1 1642 481 144 65 32 chr5 138557726 138557817 -13979442 + B1_Mur1 SINE Alu 47 140 -9 1 1642 788 192 0 58 chr5 138557817 138557972 -13979287 + B1_Mus1 SINE Alu 1 146 -2 1 1642 202 309 0 14 chr5 138557973 138558042 -13979217 + GA-rich Low_complexity Low_complexity 1 68 0 1 1642 458 267 0 10 chr5 138558990 138559092 -13978167 - PB1D10 SINE Alu -9 108 8 1 1642 327 194 0 46 chr5 138559037 138559102 -13978157 - B4A SINE B4 -146 146 85 1 1642 198 0 0 0 chr5 138559360 138559382 -13977877 + (TG)n Simple_repeat Simple_repeat 1 22 0 1 1642 248 345 64 0 chr5 138559383 138559493 -13977766 - RSINE1 SINE B4 -43 122 6 1 1642 1342 108 0 15 chr5 138559513 138559711 -13977548 + B2_Mm2 SINE B2 1 195 0 1 1642 740 156 42 14 chr5 138559740 138559883 -13977376 - B1_Mus2 SINE Alu 0 147 1 1 1642 339 187 0 0 chr5 138560103 138560210 -13977049 + T-rich Low_complexity Low_complexity 1 107 0 1 1642 1242 48 0 0 chr5 138560211 138560356 -13976903 - B1_Mus2 SINE Alu -1 146 2 1 1642 327 198 132 0 chr5 138560914 138561005 -13976254 + PB1D9 SINE Alu 5 107 -13 1 1642 216 0 0 0 chr5 138561027 138561051 -13976208 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1642 1190 66 6 40 chr5 138561057 138561207 -13976052 + B2_Mm2 SINE B2 1 151 -44 1 1642 1270 89 67 0 chr5 138561207 138561387 -13975872 - B2_Mm1a SINE B2 0 193 2 1 1642 1190 66 6 40 chr5 138561387 138561410 -13975849 + B2_Mm2 SINE B2 152 167 -28 1 1642 180 0 0 0 chr5 138561410 138561430 -13975829 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1642 400 273 89 16 chr5 138561449 138561572 -13975687 + RSINE1 SINE B4 12 143 -22 1 1642 360 0 0 0 chr5 138561594 138561634 -13975625 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1642 572 314 38 44 chr5 138561654 138561837 -13975422 + B3A SINE B2 1 182 -16 1 1642 2632 31 78 0 chr5 138561890 138562211 -13975048 - ORR1A0 LTR MaLR 0 346 1 1 1642 14412 47 7 1 chr5 138562211 138563991 -13973268 - ORR1A0-int LTR MaLR 0 1792 1 1 1642 2730 31 65 0 chr5 138563991 138564316 -13972943 - ORR1A0 LTR MaLR 0 346 1 1 1642 1092 264 54 25 chr5 138564342 138564622 -13972637 + B4A SINE B4 3 290 -2 1 1642 219 103 0 0 chr5 138564645 138564684 -13972575 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1642 266 338 25 0 chr5 138564801 138564881 -13972378 - ID4_ SINE ID 0 83 2 1 1642 874 49 205 0 chr5 138565091 138565213 -13972046 + B1_Mus2 SINE Alu 1 147 0 1 1642 1719 182 120 3 chr5 138565391 138565733 -13971526 - ORR1C2 LTR MaLR -2 382 1 1 1642 295 277 58 13 chr5 138565789 138565908 -13971351 - L1MA4 LINE L1 -325 5966 5847 1 1642 502 316 83 26 chr5 138565946 138566102 -13971157 - RSINE1 SINE B4 0 165 1 1 1642 2086 146 229 33 chr5 138566991 138567472 -13969787 - RMER15 LTR ERVL 0 575 1 1 1642 237 385 80 66 chr5 138568036 138568295 -13968964 - LTR33 LTR ERVL -53 462 215 1 1642 1186 61 0 0 chr5 138568295 138568442 -13968817 + B1_Mm SINE Alu 1 147 0 1 1642 237 385 80 66 chr5 138568442 138568621 -13968638 - LTR33 LTR ERVL -301 214 18 1 1642 662 250 165 0 chr5 138568664 138568852 -13968407 + ID_B1 SINE B4 1 219 -5 1 1642 207 208 19 0 chr5 138568933 138568971 -13968288 + T-rich Low_complexity Low_complexity 17 55 0 1 1642 1252 34 7 0 chr5 138568971 138569118 -13968141 - B1_Mus1 SINE Alu 0 148 1 1 1642 207 208 19 0 chr5 138569118 138569132 -13968127 + T-rich Low_complexity Low_complexity 3 16 0 1 1642 566 206 128 15 chr5 138569370 138569503 -13967756 + B1_Mur3 SINE Alu 2 149 0 1 1642 638 296 9 62 chr5 138569523 138569750 -13967509 + B3 SINE B2 2 216 0 1 1642 1221 94 39 6 chr5 138569760 138569941 -13967318 + B2_Mm2 SINE B2 2 188 -7 1 1642 493 223 28 28 chr5 138569952 138570058 -13967201 + RSINE1 SINE B4 2 107 -58 1 1642 436 192 39 0 chr5 138570124 138570202 -13967057 - B1_Mur1 SINE Alu -9 140 60 1 1642 1162 75 0 0 chr5 138570268 138570415 -13966844 + B1_Mus2 SINE Alu 1 147 0 1 1642 378 245 42 102 chr5 138570520 138570581 -13966678 + B1F SINE Alu 33 92 -57 1 1642 1337 188 208 13 chr5 138570581 138570899 -13966360 - RLTR14 LTR ERV1 -2 380 1 1 1642 378 245 42 102 chr5 138570899 138570955 -13966304 + B1F SINE Alu 93 143 -6 1 1642 2156 124 57 69 chr5 138570969 138571358 -13965901 + ORR1B1 LTR MaLR 3 386 -8 1 1642 1789 85 36 15 chr5 138571585 138571859 -13965400 - RLTR11A LTR ERVK 0 528 249 1 1642 774 268 64 29 chr5 138571867 138572071 -13965188 + B3A SINE B2 6 216 0 1 1642 791 265 20 10 chr5 138572096 138572298 -13964961 + B3 SINE B2 3 206 -10 1 1642 1215 55 7 0 chr5 138572323 138572469 -13964790 + B1_Mus2 SINE Alu 1 147 0 1 1642 303 293 0 12 chr5 138572483 138572566 -13964693 - ID_B1 SINE B4 -29 195 114 1 1642 342 194 63 69 chr5 138572591 138572741 -13964518 + L1M2 LINE L1 5694 5839 -461 1 1642 1572 47 16 0 chr5 138572850 138573040 -13964219 + B2_Mm1a SINE B2 1 193 0 1 1642 479 176 175 8 chr5 138573135 138573255 -13964004 - B1_Mur1 SINE Alu 0 149 10 1 1642 2686 37 12 0 chr5 138573304 138573631 -13963628 + L1_Mus1 LINE L1 6237 6567 0 1 1642 418 300 24 24 chr5 138574792 138575096 -13962163 + MMSAT4 Satellite Satellite 1 304 0 1 1642 462 250 10 179 chr5 138575508 138575703 -13961556 - RSINE1 SINE B4 0 165 4 1 1642 242 244 326 0 chr5 138575739 138575825 -13961434 + PB1D10 SINE Alu 4 117 0 1 1642 242 279 70 46 chr5 138576431 138576530 -13960729 - B3 SINE B2 -10 188 94 1 1642 1043 148 23 23 chr5 138576530 138576703 -13960556 + B2_Mm2 SINE B2 1 173 -22 2 1642 715 162 0 0 chr5 138576719 138576824 -13960435 - B3A SINE B2 -92 106 2 2 1642 940 18 0 0 chr5 138576888 138577002 -13960257 - B1_Mus2 SINE Alu -32 115 2 2 1642 477 206 63 113 chr5 138577002 138577144 -13960115 - B1_Mur1 SINE Alu -10 139 5 2 1642 620 287 20 50 chr5 138577170 138577368 -13959891 - B3A SINE B2 -5 193 2 2 1642 1647 133 616 134 chr5 138577524 138577655 -13959604 + RLTR31_Mm LTR ERVK 1 168 -393 2 1642 1236 41 7 0 chr5 138577655 138577801 -13959458 - B1_Mus1 SINE Alu 0 148 2 2 1642 1647 180 38 182 chr5 138577801 138578228 -13959031 + RLTR31_Mm LTR ERVK 169 561 0 2 1642 267 253 89 0 chr5 138578950 138579029 -13958230 + RSINE1 SINE B4 76 161 -4 2 1642 539 202 33 50 chr5 138579063 138579183 -13958076 + RSINE1 SINE B4 12 129 -36 2 1642 421 324 110 21 chr5 138579240 138579385 -13957874 + B3 SINE B2 13 170 -46 2 1642 259 157 225 14 chr5 138579624 138579695 -13957564 + ID_B1 SINE B4 129 214 -10 2 1642 244 282 62 90 chr5 138579701 138579845 -13957414 + ID_B1 SINE B4 1 140 -84 2 1642 300 256 7 161 chr5 138579984 138580133 -13957126 + B1_Mus1 SINE Alu 1 126 -22 2 1642 28 0 0 0 chr5 138580343 138580371 -13956888 + AT_rich Low_complexity Low_complexity 1 28 0 2 1642 256 289 231 0 chr5 138580441 138580545 -13956714 + ORR1E LTR MaLR 1 128 -231 2 1642 966 216 11 5 chr5 138580954 138581140 -13956119 - B3A SINE B2 -11 187 1 2 1642 246 258 93 41 chr5 138581404 138581501 -13955758 + ORR1E LTR MaLR 278 379 0 2 1642 811 164 88 6 chr5 138581724 138581883 -13955376 + ORR1C2 LTR MaLR 12 183 -195 2 1642 845 211 119 15 chr5 138581993 138582195 -13955064 + ORR1C2 LTR MaLR 162 384 0 2 1642 334 319 100 8 chr5 138582195 138582301 -13954958 + B3A SINE B2 33 149 -49 2 1642 578 283 174 0 chr5 138582458 138582642 -13954617 - ID_B1 SINE B4 -6 218 3 2 1642 892 105 14 0 chr5 138582650 138582793 -13954466 + (TTTC)n Simple_repeat Simple_repeat 2 146 0 2 1642 233 316 30 20 chr5 138582856 138582870 -13954389 - YREP_Mm Unknown Unknown -1485 327 313 2 1642 443 252 53 26 chr5 138582870 138582984 -13954275 + PB1D10 SINE Alu 1 117 0 2 1642 796 133 62 0 chr5 138583049 138583177 -13954082 + B1_Mur4 SINE Alu 1 136 -14 2 1642 290 24 48 0 chr5 138583180 138583222 -13954037 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 2 1642 1297 34 0 0 chr5 138583224 138583372 -13953887 + B1_Mus1 SINE Alu 1 148 0 2 1642 261 262 54 97 chr5 138583416 138583509 -13953750 + RSINE1 SINE B4 14 102 -63 2 1642 1636 31 0 20 chr5 138583653 138583849 -13953410 + B2_Mm1a SINE B2 1 192 -1 2 1642 304 339 73 0 chr5 138583874 138583998 -13953261 + L3 LINE CR1 4201 4333 -156 2 1642 354 269 77 0 chr5 138583999 138584103 -13953156 - B1F SINE Alu -36 113 2 2 1642 547 244 104 0 chr5 138585289 138585424 -13951835 + B1_Mur2 SINE Alu 1 149 0 2 1642 449 258 39 40 chr5 138585862 138586644 -13950615 - MMSAT4 Satellite Satellite -29 781 1 2 1642 2812 69 88 0 chr5 138587236 138587600 -13949659 + MTA_Mm LTR MaLR 1 396 0 2 1642 7654 65 22 81 chr5 138587600 138588703 -13948556 + MTA_Mm-int LTR MaLR 1 1037 -61 2 1642 1266 100 10 16 chr5 138588703 138588896 -13948363 + B2_Mm1t SINE B2 2 193 0 2 1642 7654 65 22 81 chr5 138588896 138588958 -13948301 + MTA_Mm-int LTR MaLR 1038 1098 0 2 1642 3541 23 2 0 chr5 138588958 138589353 -13947906 + MTA_Mm LTR MaLR 1 396 0 2 1642 410 213 0 0 chr5 138589377 138589452 -13947807 + B3A SINE B2 1 75 -123 2 1642 588 263 22 7 chr5 138589692 138589830 -13947429 + B1F SINE Alu 1 140 -9 2 1642 273 57 0 0 chr5 138589837 138589872 -13947387 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2 1642 514 270 87 0 chr5 138589970 138590096 -13947163 - ID_B1 SINE B4 -6 218 82 2 1642 721 251 151 11 chr5 138590110 138590295 -13946964 - B3 SINE B2 -4 212 2 2 1642 540 276 92 17 chr5 138591532 138591570 -13945689 - B3 SINE B2 0 216 166 2 1642 261 0 0 0 chr5 138591570 138591599 -13945660 + (TATG)n Simple_repeat Simple_repeat 3 31 0 2 1642 540 276 92 17 chr5 138591599 138591733 -13945526 - B3 SINE B2 -51 165 32 2 1642 472 223 48 54 chr5 138591829 138591976 -13945283 - MurSatRep1 Unknown Unknown -1393 744 599 2 1642 264 163 23 0 chr5 138592113 138592156 -13945103 + tRNA-Gly-GGA tRNA tRNA 1 44 -31 2 1642 448 333 52 0 chr5 138592204 138592339 -13944920 - RSINE1 SINE B4 -22 143 2 2 1642 358 248 14 7 chr5 138592633 138592721 -13944538 - ID4 SINE ID -55 97 12 2 1642 1142 75 0 0 chr5 138593044 138593191 -13944068 + B1_Mus1 SINE Alu 1 147 -1 2 1642 255 61 0 0 chr5 138593193 138593226 -13944033 + (A)n Simple_repeat Simple_repeat 1 33 0 2 1642 234 269 14 43 chr5 138593289 138593359 -13943900 + ID4 SINE ID 5 72 -11 2 1642 553 262 70 100 chr5 138593407 138593708 -13943551 - B4 SINE B4 0 292 1 2 1642 364 204 49 39 chr5 138593756 138593858 -13943401 + PB1D9 SINE Alu 16 118 -2 2 1642 696 197 13 20 chr5 138593861 138594011 -13943248 + B1_Mur1 SINE Alu 1 149 0 2 1642 391 229 115 0 chr5 138594467 138594563 -13942696 + PB1D7 SINE Alu 1 107 -13 2 1642 517 218 9 38 chr5 138594564 138594669 -13942590 + B3 SINE B2 1 102 -114 2 1642 746 162 231 50 chr5 138594707 138594889 -13942370 + B3 SINE B2 2 216 0 2 1642 800 133 89 0 chr5 138594924 138595059 -13942200 + B1_Mur4 SINE Alu 2 148 -2 2 1642 246 216 0 19 chr5 138595078 138595130 -13942129 + B1F1 SINE Alu 6 56 -93 2 1642 609 199 35 28 chr5 138595186 138595331 -13941928 + B1_Mus2 SINE Alu 1 146 -1 2 1642 1019 47 0 0 chr5 138595396 138595523 -13941736 - B1_Mm SINE Alu 0 147 21 2 1642 290 250 241 27 chr5 138595672 138595789 -13941470 - B1_Mm SINE Alu 0 149 13 2 1642 1281 176 14 18 chr5 138595827 138596047 -13941212 + URR1B DNA MER1_type 7 225 0 2 1642 180 97 0 0 chr5 138596346 138596377 -13940882 + (A)n Simple_repeat Simple_repeat 1 31 0 2 1642 483 135 87 12 chr5 138597316 138597426 -13939833 + B1_Mur3 SINE Alu 2 120 0 2 1642 300 251 129 109 chr5 138597461 138597480 -13939779 - L1MEe LINE L1 -4042 812 794 2 1642 1385 69 16 5 chr5 138597480 138597669 -13939590 - B2_Mm1a SINE B2 -2 191 1 2 1642 300 251 129 109 chr5 138597669 138597859 -13939400 - L1MEe LINE L1 -4061 793 599 2 1642 1116 64 14 0 chr5 138597960 138598101 -13939158 + B1_Mus1 SINE Alu 1 143 -5 2 1642 276 277 44 133 chr5 138598132 138598176 -13939083 - B2_Mm2 SINE B2 -21 174 136 2 1642 183 80 0 0 chr5 138598176 138598201 -13939058 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1642 519 200 85 15 chr5 138598201 138598314 -13938945 - B3 SINE B2 -77 139 31 2 1642 1449 88 0 10 chr5 138598314 138598509 -13938750 - B2_Mm2 SINE B2 -1 194 2 2 1642 794 280 5 5 chr5 138598511 138598701 -13938558 + ID_B1 SINE B4 15 204 -20 2 1642 410 298 9 0 chr5 138598724 138598838 -13938421 + PB1D7 SINE Alu 1 115 -5 2 1642 361 290 21 0 chr5 138599106 138599199 -13938060 + B3A SINE B2 26 120 -78 2 1642 205 152 0 0 chr5 138599515 138599548 -13937711 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1642 315 0 0 0 chr5 138599617 138599652 -13937607 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1642 1159 51 0 0 chr5 138599652 138599790 -13937469 - B1_Mus2 SINE Alu -9 138 1 2 1642 3260 53 2 8 chr5 138599812 138600209 -13937050 - MTA_Mm LTR MaLR 0 396 2 2 1642 852 157 8 0 chr5 138600209 138600343 -13936916 - B1_Mur4 SINE Alu -15 135 1 2 1642 29 0 0 0 chr5 138600950 138600979 -13936280 + AT_rich Low_complexity Low_complexity 1 29 0 2 1642 1027 53 106 0 chr5 138600984 138601116 -13936143 + B1_Mus1 SINE Alu 3 148 0 2 1642 821 84 2 0 chr5 138601255 138601372 -13935887 - B1_Mus2 SINE Alu 0 120 2 2 1642 228 86 0 0 chr5 138601383 138601418 -13935841 + (T)n Simple_repeat Simple_repeat 1 35 0 2 1642 468 36 0 0 chr5 138601430 138601485 -13935774 - ORR1C2 LTR MaLR 0 384 330 2 1642 657 201 43 0 chr5 138601504 138601643 -13935616 - B1_Mur3 SINE Alu 0 149 5 2 1642 600 253 128 81 chr5 138601721 138601932 -13935327 + B4A SINE B4 5 225 -67 2 1642 418 216 11 33 chr5 138602094 138602185 -13935074 + ID_B1 SINE B4 118 206 -18 2 1642 226 267 0 26 chr5 138602314 138602391 -13934868 + (CGG)n Simple_repeat Simple_repeat 2 76 0 2 1642 336 241 0 37 chr5 138603112 138603194 -13934065 + ID4_ SINE ID 2 80 -3 2 1642 235 150 25 0 chr5 138603193 138603233 -13934026 + ID_B1 SINE B4 117 157 -67 2 1642 212 306 109 67 chr5 138603790 138603809 -13933450 + B4 SINE B4 70 193 -99 2 1642 432 188 54 47 chr5 138603809 138603909 -13933350 + PB1D10 SINE Alu 1 104 -45 2 1642 443 268 157 52 chr5 138604061 138604309 -13932950 - B4A SINE B4 -17 275 2 2 1642 365 305 14 86 chr5 138611061 138611201 -13926058 + ID_B1 SINE B4 89 218 -6 2 1642 568 265 59 33 chr5 138611217 138611369 -13925890 + RSINE1 SINE B4 8 163 -2 2 1642 21 36 0 0 chr5 138611795 138611823 -13925436 + AT_rich Low_complexity Low_complexity 1 28 0 2 1642 216 0 0 0 chr5 138614339 138614363 -13922896 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1642 1160 68 0 26 chr5 138614822 138614974 -13922285 + B1_Mus1 SINE Alu 1 148 0 2 1642 252 244 77 0 chr5 138615044 138615122 -13922137 - RLTR19C LTR ERVK -410 96 13 2 1642 215 258 97 0 chr5 138615155 138615217 -13922042 - B4 SINE B4 -215 77 10 2 1642 556 199 72 22 chr5 138615335 138615474 -13921785 + B1_Mur1 SINE Alu 2 147 -2 2 1642 263 203 158 26 chr5 138615479 138615555 -13921704 + 4.5SRNA scRNA scRNA 1 86 -8 2 1642 681 125 16 74 chr5 138615494 138615615 -13921644 + B1_Mus2 SINE Alu 34 147 0 2 1642 608 313 0 81 chr5 138615669 138615867 -13921392 - B4 SINE B4 -110 182 1 2 1642 657 295 97 27 chr5 138616456 138616714 -13920545 - B4 SINE B4 -16 276 1 3 1642 654 216 62 35 chr5 138616720 138616864 -13920395 - B1F SINE Alu 0 149 2 3 1642 635 145 11 194 chr5 138616891 138617056 -13920203 + B1_Mur3 SINE Alu 3 136 -13 3 1642 221 0 35 0 chr5 138617056 138617085 -13920174 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 3 1642 635 145 11 194 chr5 138617085 138617099 -13920160 + B1_Mur3 SINE Alu 137 149 0 3 1642 414 100 0 0 chr5 138617595 138617655 -13919604 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 1642 267 31 0 0 chr5 138617655 138617686 -13919573 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1642 772 92 193 0 chr5 138617699 138617818 -13919441 - B1_Mus1 SINE Alu -5 143 2 3 1642 581 235 50 22 chr5 138618447 138618586 -13918673 + ID_B1 SINE B4 81 223 -1 3 1642 227 303 14 57 chr5 138618699 138618769 -13918490 + B1F1 SINE Alu 12 78 -71 3 1642 812 220 44 6 chr5 138618899 138619059 -13918200 + ID_B1 SINE B4 1 166 -58 3 1642 477 204 72 72 chr5 138618979 138619090 -13918169 + PB1D10 SINE Alu 7 117 0 3 1642 220 214 143 0 chr5 138621275 138621331 -13915928 + PB1D10 SINE Alu 21 84 -33 3 1642 234 0 0 0 chr5 138621349 138621375 -13915884 + (T)n Simple_repeat Simple_repeat 1 26 0 3 1642 277 320 0 13 chr5 138621388 138621464 -13915795 + ID4_ SINE ID 7 81 -2 3 1642 374 293 79 24 chr5 138621513 138621639 -13915620 + B3 SINE B2 74 206 -10 3 1642 360 310 86 0 chr5 138621654 138621770 -13915489 + B1F2 SINE Alu 5 130 -19 3 1642 1077 83 14 14 chr5 138622549 138622696 -13914563 + B1_Mus2 SINE Alu 1 147 0 3 1642 429 216 16 65 chr5 138622745 138622869 -13914390 + MT2B LTR ERVL 140 257 -344 3 1642 807 99 75 15 chr5 138622781 138622914 -13914345 + B1_Mur3 SINE Alu 9 149 0 3 1642 266 182 0 0 chr5 138624012 138624056 -13913203 + B4 SINE B4 5 48 -244 3 1642 345 47 0 0 chr5 138624089 138624132 -13913127 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1642 809 125 13 46 chr5 138625176 138625327 -13911932 - B1_Mur4 SINE Alu 0 150 5 3 1642 602 276 57 11 chr5 138625355 138625531 -13911728 + ID_B1 SINE B4 5 188 -36 3 1642 439 240 67 0 chr5 138625905 138626009 -13911250 - PB1D9 SINE Alu -7 113 3 3 1642 391 236 299 12 chr5 138626035 138626202 -13911057 - ID_B1 SINE B4 -8 216 2 3 1642 753 189 0 0 chr5 138626231 138626353 -13910906 - B1_Mus1 SINE Alu -26 122 1 3 1642 255 265 44 7 chr5 138626353 138626382 -13910877 - ORR1B1-int LTR MaLR -863 646 613 3 1642 623 223 85 25 chr5 138626367 138626520 -13910739 - ID_B1 SINE B4 0 224 71 3 1642 319 212 60 15 chr5 138626536 138626603 -13910656 + ID4 SINE ID 3 72 -11 3 1642 320 273 174 0 chr5 138627151 138627272 -13909987 - B1_Mus1 SINE Alu -6 142 1 3 1642 1202 68 0 0 chr5 138627613 138627760 -13909499 - B1_Mus1 SINE Alu 0 148 2 3 1642 23 0 0 0 chr5 138628713 138628736 -13908523 + AT_rich Low_complexity Low_complexity 1 23 0 3 1642 657 107 117 0 chr5 138629754 138629857 -13907402 - B1_Mus2 SINE Alu -12 135 21 3 1642 434 239 85 50 chr5 138629872 138630013 -13907246 - B4 SINE B4 -146 146 1 3 1642 1142 61 0 52 chr5 138630054 138630209 -13907050 - B1_Mus1 SINE Alu 0 148 2 3 1642 1192 55 7 0 chr5 138630492 138630638 -13906621 - B1_Mus1 SINE Alu 0 148 2 3 1642 351 284 284 0 chr5 138630737 138630864 -13906395 - RSINE1 SINE B4 0 165 3 3 1642 907 148 0 0 chr5 138630881 138631023 -13906236 - B1_Mus1 SINE Alu -1 147 6 3 1642 444 318 124 5 chr5 138631211 138631404 -13905855 - MIR SINE MIR -21 241 26 3 1642 697 80 214 0 chr5 138631985 138632097 -13905162 - B1_Mus1 SINE Alu 0 148 13 3 1642 729 176 0 46 chr5 138632096 138632227 -13905032 - B1_Mus1 SINE Alu -11 137 13 3 1642 300 291 40 142 chr5 138632098 138632246 -13905013 - B4 SINE B4 -79 213 81 3 1642 415 321 30 42 chr5 138632254 138632275 -13904984 - B4A SINE B4 -46 246 228 3 1642 706 271 7 0 chr5 138632275 138632426 -13904833 - RSINE1 SINE B4 -12 153 2 3 1642 554 257 28 28 chr5 138632426 138632570 -13904689 - B4 SINE B4 -66 226 83 3 1642 22 0 0 0 chr5 138632571 138632593 -13904666 + AT_rich Low_complexity Low_complexity 1 22 0 3 1642 866 178 241 0 chr5 138632593 138632767 -13904492 - B3 SINE B2 0 216 1 3 1642 276 155 182 78 chr5 138632785 138632862 -13904397 - B4 SINE B4 -206 86 2 3 1642 322 196 202 64 chr5 138633486 138633595 -13903664 - ID_B1 SINE B4 -9 215 92 3 1642 210 219 0 0 chr5 138634040 138634081 -13903178 + GA-rich Low_complexity Low_complexity 3 43 0 3 1642 532 242 179 6 chr5 138634499 138634678 -13902581 + ID_B1 SINE B4 13 222 -2 3 1642 432 282 83 15 chr5 138634993 138635126 -13902133 + ID_B1 SINE B4 83 224 0 3 1642 533 232 97 21 chr5 138636655 138636800 -13900459 - RSINE1 SINE B4 0 165 10 3 1642 283 216 176 0 chr5 138637014 138637088 -13900171 - ID_B1 SINE B4 -1 223 137 3 1642 645 164 23 151 chr5 138637114 138637286 -13899973 - B1_Mur4 SINE Alu 0 150 1 3 1642 251 318 108 65 chr5 138637301 138637580 -13899679 - L2a LINE L2 -1 3425 3135 3 1642 211 253 0 48 chr5 138637584 138637611 -13899648 + T-rich Low_complexity Low_complexity 53 79 0 3 1642 1224 54 0 0 chr5 138637611 138637759 -13899500 - B1_Mus1 SINE Alu 0 148 1 3 1642 211 253 0 48 chr5 138637759 138637795 -13899464 + T-rich Low_complexity Low_complexity 19 52 0 3 1642 524 263 50 25 chr5 138637795 138637955 -13899304 - RSINE1 SINE B4 0 165 2 3 1642 211 253 0 48 chr5 138637955 138637973 -13899286 + T-rich Low_complexity Low_complexity 1 18 0 3 1642 1000 227 53 15 chr5 138637975 138638181 -13899078 + ID_B1 SINE B4 11 224 0 3 1642 3222 63 8 0 chr5 138638249 138638646 -13898613 - MTB LTR MaLR 0 400 1 3 1642 3114 42 26 3 chr5 138638723 138639103 -13898156 - L1Md_F2 LINE L1 -2 6580 6192 3 1642 674 235 0 22 chr5 138639136 138639271 -13897988 + ID_B1 SINE B4 93 224 0 3 1642 1060 164 38 0 chr5 138639371 138639554 -13897705 + URR1B DNA MER1_type 36 225 0 3 1642 379 250 32 11 chr5 138639938 138640031 -13897228 + PB1D10 SINE Alu 11 105 -12 3 1642 554 257 183 23 chr5 138640049 138640224 -13897035 + ID_B1 SINE B4 2 204 -20 3 1642 270 0 0 0 chr5 138640236 138640266 -13896993 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 3 1642 348 24 0 0 chr5 138640477 138640518 -13896741 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 3 1642 228 67 0 0 chr5 138640520 138640550 -13896709 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1642 1278 34 0 0 chr5 138640552 138640699 -13896560 - B1_Mus2 SINE Alu 0 147 1 3 1642 360 317 10 19 chr5 138640702 138640805 -13896454 - ID_B1 SINE B4 -90 134 33 3 1642 210 97 0 0 chr5 138640921 138640952 -13896307 + B1_Mm SINE Alu 86 116 -31 3 1642 578 216 70 28 chr5 138641151 138641294 -13895965 - B1_Mur4 SINE Alu -1 149 1 3 1642 224 30 0 29 chr5 138641298 138641332 -13895927 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 3 1642 28 51 0 17 chr5 138641332 138641353 -13895906 + AT_rich Low_complexity Low_complexity 1 21 0 3 1642 1241 55 0 0 chr5 138641353 138641499 -13895760 - B1_Mus2 SINE Alu 0 147 2 3 1642 28 51 0 17 chr5 138641499 138641537 -13895722 + AT_rich Low_complexity Low_complexity 1 38 0 3 1642 561 256 16 80 chr5 138641537 138641569 -13895690 - B3A SINE B2 0 198 173 3 1642 264 77 0 0 chr5 138641569 138641608 -13895651 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 1642 561 256 16 80 chr5 138641608 138641762 -13895497 - B3A SINE B2 -26 172 24 3 1642 589 242 17 0 chr5 138641787 138641907 -13895352 - B1_Mur1 SINE Alu -22 127 6 3 1642 309 367 55 0 chr5 138641799 138641927 -13895332 - B4 SINE B4 -88 204 70 3 1642 500 272 48 8 chr5 138642347 138642473 -13894786 - ETnERV2-int LTR ERVK -206 7200 7070 3 1642 445 224 18 53 chr5 138642657 138642770 -13894489 - ID_B1 SINE B4 0 224 116 3 1642 219 114 0 0 chr5 138642800 138642835 -13894424 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 3 1642 186 208 0 0 chr5 138642841 138642889 -13894370 + CT-rich Low_complexity Low_complexity 1 48 0 3 1642 300 206 44 19 chr5 138642892 138642978 -13894281 - B1_Mur1 SINE Alu -1 148 64 3 1642 517 267 16 8 chr5 138642978 138643099 -13894160 + B4 SINE B4 3 124 -168 3 1642 412 188 11 34 chr5 138643112 138643200 -13894059 + MTC LTR MaLR 1 86 -335 3 1642 194 0 39 0 chr5 138643602 138643628 -13893631 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 1642 617 241 139 0 chr5 138643674 138643811 -13893448 - RSINE1 SINE B4 -6 159 4 3 1642 1746 153 36 65 chr5 138643865 138643892 -13893367 - ORR1A2 LTR MaLR -1 326 302 3 1642 231 61 0 0 chr5 138643892 138643925 -13893334 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 3 1642 1746 153 36 65 chr5 138643925 138644233 -13893026 - ORR1A2 LTR MaLR -26 301 2 3 1642 2080 169 10 79 chr5 138644287 138644693 -13892566 + ORR1B1 LTR MaLR 4 381 -13 3 1642 282 288 0 0 chr5 138644693 138644759 -13892500 - ID_B1 SINE B4 -75 149 84 3 1642 387 271 14 104 chr5 138644788 138644932 -13892327 + MT2B LTR ERVL 127 257 -344 3 1642 791 76 93 0 chr5 138644848 138644966 -13892293 + B1_Mm SINE Alu 19 147 0 3 1642 1125 82 0 39 chr5 138645490 138645643 -13891616 - B1_Mus1 SINE Alu 0 148 2 3 1642 2869 58 0 9 chr5 138645851 138646199 -13891060 - IAPLTR4 LTR ERVK 0 345 1 3 1642 751 269 24 19 chr5 138646216 138646428 -13890831 - B3 SINE B2 0 216 4 3 1642 261 0 0 0 chr5 138646468 138646497 -13890762 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 1642 397 324 120 0 chr5 138646523 138646665 -13890594 - RSINE1 SINE B4 -4 161 3 4 1642 1667 254 7 71 chr5 138647332 138647925 -13889334 + RLTR6-int LTR ERV1 1782 2336 -5442 4 1642 30 27 0 0 chr5 138648056 138648093 -13889166 + AT_rich Low_complexity Low_complexity 1 37 0 4 1642 1125 79 0 0 chr5 138648093 138648233 -13889026 - B1_Mus1 SINE Alu -6 142 3 4 1642 3591 200 66 30 chr5 138649058 138649958 -13887301 + RLTR18-int LTR ERVK 2529 3460 -1901 4 1642 2443 80 47 26 chr5 138649958 138650343 -13886916 + BGLII_Mus LTR ERVK 1 393 -29 4 1642 476 286 20 73 chr5 138650426 138650630 -13886629 - RMER10B LTR ERVL -12 386 194 4 1642 826 242 78 44 chr5 138650819 138651139 -13886120 - RMER17C-int LTR ERVK 0 3238 2908 4 1642 474 65 0 0 chr5 138651139 138651201 -13886058 + (TA)n Simple_repeat Simple_repeat 2 63 0 4 1642 1803 132 82 7 chr5 138651203 138651507 -13885752 - IAPEY3_LTR LTR ERVK -5 327 1 4 1642 51649 94 27 17 chr5 138651507 138657803 -13879456 - IAPEY3-int LTR ERVK 0 7680 1241 4 1642 231 261 90 80 chr5 138657803 138657903 -13879356 - LTR86C LTR ERVL -507 114 14 4 1642 51649 94 27 17 chr5 138657903 138659112 -13878147 - IAPEY3-int LTR ERVK 0 1240 3 4 1642 1970 112 81 10 chr5 138659112 138659420 -13877839 - IAPEY3_LTR LTR ERVK -1 331 2 4 1642 288 0 0 0 chr5 138659420 138659452 -13877807 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1642 668 229 110 44 chr5 138659457 138659685 -13877574 - RMER17C-int LTR ERVK -369 2869 2627 4 1642 1123 100 0 16 chr5 138659691 138659874 -13877385 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1642 1162 97 45 11 chr5 138659916 138660094 -13877165 + B2_Mm2 SINE B2 2 185 -10 4 1642 1608 210 87 59 chr5 138660116 138660354 -13876905 - RLTR20B3 LTR ERVK -68 509 270 4 1642 984 153 0 0 chr5 138660354 138660524 -13876735 + CT-rich Low_complexity Low_complexity 1 170 0 4 1642 1608 210 87 59 chr5 138660524 138660610 -13876649 - RLTR20B3 LTR ERVK -308 269 178 4 1642 360 0 0 0 chr5 138660610 138660650 -13876609 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1642 1608 210 87 59 chr5 138660650 138660819 -13876440 - RLTR20B3 LTR ERVK -400 177 3 4 1642 468 91 30 0 chr5 138660964 138661030 -13876229 + U4 snRNA snRNA 1 68 -77 4 1642 1452 262 38 92 chr5 138661454 138662119 -13875140 - MYSERV6-int LTR ERVK -277 8682 8054 4 1642 902 44 0 0 chr5 138662273 138662387 -13874872 + B1_Mm SINE Alu 34 147 0 4 1642 871 202 214 0 chr5 138662408 138662581 -13874678 + B3 SINE B2 1 210 -6 4 1642 441 125 57 0 chr5 138662848 138662936 -13874323 - RLTR28B LTR ERVL -340 141 49 4 1642 197 258 15 0 chr5 138662989 138663055 -13874204 + G-rich Low_complexity Low_complexity 2 68 0 4 1642 345 129 0 91 chr5 138663062 138663139 -13874120 - RLTR28B LTR ERVL -402 79 10 4 1642 546 266 96 117 chr5 138663328 138663427 -13873832 + L1MA8 LINE L1 5366 5462 -829 4 1642 491 200 323 6 chr5 138663427 138663588 -13873671 - B3 SINE B2 -4 212 1 4 1642 546 266 96 117 chr5 138663588 138663754 -13873505 + L1MA8 LINE L1 5463 5620 -671 4 1642 739 244 14 72 chr5 138663754 138663962 -13873297 + B3A SINE B2 1 196 -2 4 1642 546 266 96 117 chr5 138663962 138664135 -13873124 + L1MA8 LINE L1 5621 5778 -513 4 1642 882 156 20 20 chr5 138664135 138664285 -13872974 + B1_Mur4 SINE Alu 1 150 0 4 1642 546 266 96 117 chr5 138664285 138664384 -13872875 + L1MA8 LINE L1 5779 5894 -397 4 1642 494 42 0 27 chr5 138664480 138664554 -13872705 + L1Md_F2 LINE L1 6499 6570 -12 4 1642 1351 225 41 94 chr5 138664581 138664881 -13872378 + MTD LTR MaLR 1 291 -128 4 1642 1187 62 0 7 chr5 138664881 138665027 -13872232 - B1_Mus2 SINE Alu -2 145 1 4 1642 1351 225 41 94 chr5 138665027 138665065 -13872194 + MTD LTR MaLR 292 321 -98 4 1642 364 164 0 32 chr5 138665152 138665215 -13872044 + MTD LTR MaLR 351 411 -8 4 1642 448 301 53 47 chr5 138665284 138665434 -13871825 - ID_B1 SINE B4 -71 153 3 4 1642 439 274 0 9 chr5 138665640 138665754 -13871505 - ID_B1 SINE B4 -8 216 104 4 1642 235 329 102 102 chr5 138666044 138666230 -13871029 + B4 SINE B4 107 292 0 4 1642 566 141 53 6 chr5 138666230 138666401 -13870858 + (CA)n Simple_repeat Simple_repeat 2 180 0 4 1642 240 122 24 0 chr5 138666406 138666447 -13870812 + (CATA)n Simple_repeat Simple_repeat 4 45 0 4 1642 312 181 16 68 chr5 138666453 138666643 -13870616 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1642 21 0 0 0 chr5 138666668 138666689 -13870570 + AT_rich Low_complexity Low_complexity 1 21 0 4 1642 793 236 7 0 chr5 138666695 138666835 -13870424 + B1_Mur1 SINE Alu 2 142 -7 4 1642 790 264 15 45 chr5 138666989 138667187 -13870072 - ID_B1 SINE B4 -29 195 4 4 1642 234 0 0 0 chr5 138667265 138667291 -13869968 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 4 1642 805 152 114 0 chr5 138667340 138667472 -13869787 + B1_Mus1 SINE Alu 2 148 0 4 1642 449 282 163 14 chr5 138667659 138667868 -13869391 - Lx8 LINE L1 -231 7242 7003 4 1642 502 227 42 8 chr5 138667893 138668013 -13869246 - ID_B1 SINE B4 -13 211 88 4 1642 499 179 53 0 chr5 138668013 138668108 -13869151 + ORR1C1 LTR MaLR 1 100 -278 4 1642 1172 150 5 46 chr5 138668105 138668128 -13869131 + URR1B DNA MER1_type 8 31 -194 4 1642 3782 62 19 0 chr5 138668128 138668594 -13868665 - MT2C_Mm LTR ERVL 0 475 1 4 1642 1172 150 5 46 chr5 138668594 138668787 -13868472 + URR1B DNA MER1_type 32 215 -10 4 1642 425 172 115 0 chr5 138668783 138668870 -13868389 + ORR1C1 LTR MaLR 110 206 -178 4 1642 21 36 0 0 chr5 138668976 138669004 -13868255 + AT_rich Low_complexity Low_complexity 1 28 0 4 1642 1381 77 22 0 chr5 138669128 138669311 -13867948 - B2_Mm2 SINE B2 -7 188 2 4 1642 326 230 68 0 chr5 138669436 138669510 -13867749 + B3 SINE B2 111 189 -27 4 1642 5897 84 17 16 chr5 138669863 138670670 -13866589 - RLTR13C2 LTR ERVK 0 808 1 4 1642 307 362 42 26 chr5 138671457 138671647 -13865612 - RMER15 LTR ERVL -37 538 346 4 1642 730 204 0 39 chr5 138672185 138672338 -13864921 + B1_Mus1 SINE Alu 2 148 0 4 1642 281 141 0 37 chr5 138672346 138672427 -13864832 + A-rich Low_complexity Low_complexity 1 78 0 4 1642 447 19 0 0 chr5 138672427 138672479 -13864780 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1642 490 296 8 8 chr5 138673215 138673341 -13863918 + B3A SINE B2 1 126 -72 4 1642 189 0 0 0 chr5 138673367 138673388 -13863871 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1642 425 199 182 9 chr5 138673431 138673548 -13863711 + B1_Mur2 SINE Alu 10 148 -1 4 1642 680 290 0 12 chr5 138673568 138673732 -13863527 + RSINE1 SINE B4 4 165 0 4 1642 399 220 0 0 chr5 138673788 138673879 -13863380 + RMER1B Other Other 363 453 -613 4 1642 489 80 0 0 chr5 138673961 138674036 -13863223 + (TG)n Simple_repeat Simple_repeat 2 76 0 4 205 1989 168 29 34 chr5 138674117 138674499 -13862760 - RLTR14 LTR ERV1 0 382 3 4 1643 283 176 0 0 chr5 138674516 138674567 -13862692 - RLTR14-int LTR ERV1 0 5317 5267 4 1643 3592 162 93 22 chr5 138674595 138675333 -13861926 - RLTR14-int LTR ERV1 -120 5197 4407 4 1643 304 93 0 0 chr5 138675352 138675395 -13861864 - RLTR14-int LTR ERV1 -998 4319 4277 4 1643 183 178 0 135 chr5 138675395 138675447 -13861812 + L3 LINE CR1 1144 1188 -3301 4 1643 601 188 47 7 chr5 138675447 138675597 -13861662 - RLTR14-int LTR ERV1 -1091 4226 4071 4 1643 404 226 38 0 chr5 138675599 138675705 -13861554 - RLTR14-int LTR ERV1 -1193 4124 4015 4 1643 2925 170 41 55 chr5 138675711 138676365 -13860894 - RLTR14-int LTR ERV1 -2595 2722 2078 4 1643 926 201 75 16 chr5 138676366 138676619 -13860640 - RLTR14-int LTR ERV1 -4064 1253 986 4 1643 24 0 0 0 chr5 138676721 138676745 -13860514 + AT_rich Low_complexity Low_complexity 1 24 0 4 1643 2777 216 82 42 chr5 138676783 138677131 -13860128 - RLTR14-int LTR ERV1 -4533 784 436 4 1643 330 26 0 0 chr5 138677131 138677170 -13860089 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1643 384 22 0 0 chr5 138677170 138677214 -13860045 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1643 2777 216 82 42 chr5 138677214 138677618 -13859641 - RLTR14-int LTR ERV1 -4882 435 2 4 1643 1972 196 19 3 chr5 138677624 138677993 -13859266 - RLTR14 LTR ERV1 -7 375 1 4 1643 262 100 200 0 chr5 138678044 138678094 -13859165 - ORR1A4 LTR MaLR -267 62 3 4 1643 2967 136 6 171 chr5 138678096 138678141 -13859118 - ORR1A4-int LTR MaLR 0 1963 1924 4 1643 1207 55 0 0 chr5 138678141 138678286 -13858973 + B1_Mus2 SINE Alu 2 146 -1 4 1643 2967 136 6 171 chr5 138678286 138678912 -13858347 - ORR1A4-int LTR MaLR -40 1923 1403 4 1643 437 309 122 0 chr5 138679551 138679690 -13857569 + RSINE1 SINE B4 2 157 -8 4 1643 456 19 0 0 chr5 138679700 138679753 -13857506 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1643 858 250 24 9 chr5 138679791 138680001 -13857258 + B3 SINE B2 4 216 0 4 1643 1121 75 0 45 chr5 138680223 138680377 -13856882 + B1_Mus1 SINE Alu 2 148 0 4 1643 474 229 21 0 chr5 138681251 138681347 -13855912 - RSINE1 SINE B4 -33 132 35 4 1643 243 125 0 0 chr5 138681357 138681397 -13855862 + (CAT)n Simple_repeat Simple_repeat 3 42 0 4 1643 1111 108 0 0 chr5 138681454 138681621 -13855638 - L1_Mus1 LINE L1 0 6567 6401 4 1643 216 242 0 108 chr5 138681632 138681706 -13855553 + PB1D10 SINE Alu 49 114 -3 4 1643 203 299 80 73 chr5 138681740 138681877 -13855382 + L4 LINE RTE 1644 1781 -248 4 1643 576 0 0 0 chr5 138681909 138681973 -13855286 + (TTTTC)n Simple_repeat Simple_repeat 3 66 0 4 1643 403 203 11 28 chr5 138682334 138682516 -13854743 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1643 305 136 15 0 chr5 138682571 138682637 -13854622 + (TG)n Simple_repeat Simple_repeat 2 68 0 4 1643 26 30 0 0 chr5 138682726 138682759 -13854500 + AT_rich Low_complexity Low_complexity 1 33 0 4 1643 522 0 0 0 chr5 138683261 138683319 -13853940 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1643 661 247 144 35 chr5 138683724 138683925 -13853334 - B4A SINE B4 -68 224 2 4 1643 235 263 51 38 chr5 138683967 138684046 -13853213 + MIRb SINE MIR 6 85 -183 4 1643 1488 28 0 0 chr5 138684134 138684311 -13852948 + (GGGAGA)n Simple_repeat Simple_repeat 3 179 0 4 1643 253 316 74 66 chr5 138684322 138684444 -13852815 + ID_B1 SINE B4 79 201 -23 4 1643 279 258 0 0 chr5 138684417 138684483 -13852776 - ID SINE ID -153 71 6 4 1643 207 0 0 0 chr5 138684864 138684887 -13852372 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1643 615 224 0 31 chr5 138684888 138685017 -13852242 - B1_Mur1 SINE Alu -13 136 12 4 1643 281 275 8 121 chr5 138684915 138685039 -13852220 - MT2B LTR ERVL -338 263 154 4 1643 393 234 0 0 chr5 138685032 138685109 -13852150 - ID_B1 SINE B4 0 224 148 4 1643 324 0 0 0 chr5 138685123 138685159 -13852100 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1643 519 259 19 0 chr5 138685162 138685270 -13851989 - RSINE1 SINE B4 -16 149 40 4 1643 539 239 12 48 chr5 138685325 138685492 -13851767 - RSINE1 SINE B4 0 165 5 4 1643 340 338 84 7 chr5 138685492 138685635 -13851624 - ID_B1 SINE B4 -66 158 5 4 1643 1145 96 6 0 chr5 138685662 138685840 -13851419 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 4 1643 624 14 0 0 chr5 138685844 138685917 -13851342 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 4 1643 503 242 105 0 chr5 138685917 138686041 -13851218 - B1_Mur1 SINE Alu -11 138 2 4 1643 987 72 0 0 chr5 138686068 138686193 -13851066 - B1_Mm SINE Alu -4 143 19 4 1643 302 273 0 0 chr5 138686285 138686351 -13850908 + ID_B1 SINE B4 84 149 -75 4 1643 2191 160 7 79 chr5 138686351 138686758 -13850501 - ORR1B1 LTR MaLR -13 381 4 4 1643 1233 198 11 33 chr5 138686781 138687048 -13850211 + ORR1A1 LTR MaLR 1 271 -123 5 1643 13151 51 3 1 chr5 138687073 138689497 -13847762 - L1Md_F2 LINE L1 -4 6578 4151 5 1643 695 110 31 78 chr5 138689500 138689628 -13847631 + ORR1A1 LTR MaLR 199 320 -6 5 1643 485 275 158 0 chr5 138689696 138689816 -13847443 + RSINE1 SINE B4 11 149 -16 5 1643 204 67 0 0 chr5 138689816 138689846 -13847413 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1643 560 236 16 24 chr5 138690313 138690439 -13846820 - B1_Mur1 SINE Alu -1 148 24 5 1643 595 298 50 40 chr5 138690520 138690719 -13846540 - ID_B1 SINE B4 -21 203 3 5 1643 228 214 0 0 chr5 138690886 138690942 -13846317 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1643 266 253 12 107 chr5 138690942 138691026 -13846233 - B4 SINE B4 0 292 217 5 1643 373 277 94 69 chr5 138691062 138691221 -13846038 - RSINE1 SINE B4 0 165 3 5 1643 428 324 14 75 chr5 138691346 138691398 -13845861 + ID_B1 SINE B4 78 127 -97 5 1643 2045 116 23 84 chr5 138691398 138691745 -13845514 - ORR1A3 LTR MaLR 0 326 1 5 1643 428 324 14 75 chr5 138691745 138691839 -13845420 + ID_B1 SINE B4 128 215 -9 5 1643 198 208 0 0 chr5 138691866 138691914 -13845345 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1643 599 260 24 0 chr5 138691918 138692041 -13845218 + B1_Mur1 SINE Alu 3 128 -21 5 1643 324 0 0 0 chr5 138692053 138692089 -13845170 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 5 1643 579 313 0 47 chr5 138692133 138692304 -13844955 - RSINE1 SINE B4 -1 164 2 5 1643 583 324 130 5 chr5 138693099 138693322 -13843937 - B4A SINE B4 -41 251 1 5 1643 21 0 0 0 chr5 138693324 138693345 -13843914 + AT_rich Low_complexity Low_complexity 1 21 0 5 1643 779 183 35 0 chr5 138693355 138693497 -13843762 + B1_Mur4 SINE Alu 1 147 -3 5 1643 1643 83 8 16 chr5 138693510 138693754 -13843505 + Lx3A LINE L1 6740 6981 0 5 1643 667 61 0 0 chr5 138693757 138693839 -13843420 + B1_Mus2 SINE Alu 61 142 -5 5 1643 263 221 0 172 chr5 138693770 138693840 -13843419 + B4 SINE B4 165 221 -71 5 1643 342 0 0 0 chr5 138693840 138693878 -13843381 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 1643 263 221 0 172 chr5 138693878 138693900 -13843359 + B4 SINE B4 222 241 -51 5 1643 1200 48 14 0 chr5 138693915 138694061 -13843198 + B1_Mus1 SINE Alu 1 148 0 5 1643 553 307 43 0 chr5 138694204 138694344 -13842915 + B3 SINE B2 58 203 -13 5 1643 582 250 93 67 chr5 138694408 138694601 -13842658 + B3A SINE B2 1 198 0 5 1643 551 176 0 19 chr5 138694612 138694716 -13842543 + B1_Mm SINE Alu 1 102 -45 5 1643 1139 181 23 46 chr5 138694674 138695000 -13842259 + RLTR28 LTR ERVL 159 524 0 5 1643 473 250 0 9 chr5 138695041 138695146 -13842113 + PB1D9 SINE Alu 10 113 -7 5 1643 420 20 0 0 chr5 138695148 138695197 -13842062 + (CCAA)n Simple_repeat Simple_repeat 3 51 0 5 1643 273 29 0 0 chr5 138695569 138695603 -13841656 + (TC)n Simple_repeat Simple_repeat 1 34 0 5 1643 225 214 0 0 chr5 138695707 138695749 -13841510 - RSINE1 SINE B4 -121 44 3 5 1643 221 286 65 0 chr5 138695757 138695834 -13841425 - ID4_ SINE ID -1 82 1 5 1643 214 319 0 27 chr5 138695892 138695966 -13841293 + BC1_Mm scRNA scRNA 12 83 -69 5 1643 229 313 109 27 chr5 138695977 138696161 -13841098 - L1MB8 LINE L1 -37 6141 5943 5 1643 284 260 17 130 chr5 138696171 138696286 -13840973 - PB1D10 SINE Alu -3 114 13 5 1643 189 0 0 0 chr5 138697595 138697616 -13839643 + (TG)n Simple_repeat Simple_repeat 1 21 0 5 1643 785 268 62 5 chr5 138697762 138697972 -13839287 + ID_B1 SINE B4 3 224 0 5 1643 536 237 91 8 chr5 138698057 138698189 -13839070 - RSINE1 SINE B4 -21 144 2 5 1643 195 42 0 0 chr5 138698200 138698224 -13839035 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 5 1643 660 287 137 30 chr5 138698596 138698858 -13838401 - B4A SINE B4 -1 291 2 5 1643 1350 137 14 16 chr5 138699374 138699625 -13837634 + ZP3AR Satellite Satellite 1 250 -1 5 1643 186 43 0 0 chr5 138700188 138700211 -13837048 + (T)n Simple_repeat Simple_repeat 1 23 0 5 1643 314 250 119 10 chr5 138702422 138702523 -13834736 - MIRb SINE MIR -77 191 80 5 1643 479 60 15 0 chr5 138702524 138702591 -13834668 + (TG)n Simple_repeat Simple_repeat 2 69 0 5 1643 689 225 83 17 chr5 138703185 138703365 -13833894 - ID_B1 SINE B4 -29 195 5 5 1643 299 287 11 11 chr5 138705401 138705489 -13831770 + CT-rich Low_complexity Low_complexity 1 88 0 5 1643 1000 271 5 5 chr5 138705493 138705708 -13831551 - ID_B1 SINE B4 0 224 10 5 1643 201 129 0 0 chr5 138705732 138705763 -13831496 + (TTG)n Simple_repeat Simple_repeat 3 33 0 5 1643 858 164 191 6 chr5 138705956 138706134 -13831125 + B3 SINE B2 1 211 -5 5 1643 299 306 20 47 chr5 138707554 138707713 -13829546 + MIRc SINE MIR 3 154 -114 5 1643 818 222 6 12 chr5 138707842 138707926 -13829333 + B4A SINE B4 1 83 -209 5 1643 230 273 0 132 chr5 138707926 138708040 -13829219 + B1_Mm SINE Alu 1 99 -48 5 1643 381 58 0 0 chr5 138708074 138708126 -13829133 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1643 1299 212 73 0 chr5 138708136 138708395 -13828864 - B4 SINE B4 -12 280 3 5 1643 263 313 90 10 chr5 138708403 138708503 -13828756 - PB1D10 SINE Alu -8 109 2 5 1643 427 289 202 37 chr5 138708954 138709172 -13828087 + B4A SINE B4 3 256 -36 5 1643 473 310 49 42 chr5 138709434 138709720 -13827539 + B4 SINE B4 3 290 -2 5 1643 246 62 0 0 chr5 138709799 138709831 -13827428 + (T)n Simple_repeat Simple_repeat 1 32 0 5 1643 369 242 152 0 chr5 138710177 138710276 -13826983 + PB1D7 SINE Alu 2 115 -5 5 1643 313 234 62 38 chr5 138710374 138710454 -13826805 + ID4_ SINE ID 2 83 0 5 1643 405 276 26 8 chr5 138710492 138710609 -13826650 + PB1D7 SINE Alu 2 120 0 5 1643 812 245 68 11 chr5 138710648 138710838 -13826421 + ID_B1 SINE B4 2 202 -22 5 1643 531 138 0 0 chr5 138710854 138710941 -13826318 + (CA)n Simple_repeat Simple_repeat 2 88 0 5 1643 308 146 21 0 chr5 138710944 138710992 -13826267 + HAL1-3A_ME LINE L1 1976 2024 -834 5 1643 898 215 81 19 chr5 138711263 138711472 -13825787 - ID_B1 SINE B4 0 224 3 5 1643 908 255 26 44 chr5 138711554 138711780 -13825479 + B4A SINE B4 71 292 0 5 1643 198 0 0 0 chr5 138712903 138712925 -13824334 + (TG)n Simple_repeat Simple_repeat 2 23 0 5 1643 511 326 81 51 chr5 138714585 138714821 -13822438 + B4A SINE B4 24 266 -26 5 1643 267 79 0 0 chr5 138714834 138714872 -13822387 + (CA)n Simple_repeat Simple_repeat 1 38 0 5 1643 314 222 4 42 chr5 138715091 138715170 -13822089 - PB1D10 SINE Alu -70 79 1 5 1643 265 280 0 74 chr5 138715099 138715180 -13822079 - ID_B1 SINE B4 -75 149 75 5 1643 294 328 67 11 chr5 138718920 138719100 -13818159 + MIRb SINE MIR 7 210 -58 5 1643 203 273 33 43 chr5 138719770 138719862 -13817397 + GA-rich Low_complexity Low_complexity 4 94 0 5 1643 1284 27 0 0 chr5 138722009 138722155 -13815104 - B1_Mus2 SINE Alu 0 147 2 5 1643 29 0 0 0 chr5 138722620 138722649 -13814610 + AT_rich Low_complexity Low_complexity 1 29 0 5 1643 380 235 71 35 chr5 138722773 138722914 -13814345 - B1F SINE Alu -3 146 1 5 1643 499 246 53 8 chr5 138723397 138723528 -13813731 + ID_B1 SINE B4 80 216 -8 5 1643 389 223 5 11 chr5 138725146 138725253 -13812006 - B1_Mur1 SINE Alu -10 139 6 5 1643 851 162 190 0 chr5 138725577 138725756 -13811503 - B3 SINE B2 -3 213 1 5 1643 306 250 155 0 chr5 138725819 138725903 -13811356 + PB1D9 SINE Alu 12 108 -12 5 1643 284 0 28 0 chr5 138725903 138725939 -13811320 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 5 1643 1267 113 32 0 chr5 138726370 138726556 -13810703 - B2_Mm2 SINE B2 -2 193 2 5 1643 904 153 0 0 chr5 138726836 138726980 -13810279 + B1_Mus2 SINE Alu 3 146 -1 5 1643 352 229 19 114 chr5 138727224 138727382 -13809877 - L1MEe LINE L1 -3936 2213 2071 5 1643 396 286 135 0 chr5 138727359 138727537 -13809722 - L1MEe LINE L1 -4386 1763 1562 5 1643 598 206 53 0 chr5 138727578 138727709 -13809550 - B1_Mur1 SINE Alu -7 142 5 5 1643 469 233 83 0 chr5 138727744 138727864 -13809395 - B1F SINE Alu -9 140 11 5 1643 1699 156 21 96 chr5 138727930 138728306 -13808953 - ORR1B1 LTR MaLR -8 386 39 5 1643 509 295 44 13 chr5 138728351 138728509 -13808750 + RSINE1 SINE B4 3 165 0 5 1643 265 297 19 47 chr5 138728551 138728657 -13808602 + MER3 DNA MER1_type 40 142 -67 5 1643 248 0 31 0 chr5 138729111 138729143 -13808116 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5 1643 614 60 0 0 chr5 138729143 138729226 -13808033 - B1_Mus2 SINE Alu -11 136 54 5 1643 658 226 33 6 chr5 138729230 138729399 -13807860 - B3A SINE B2 -27 189 13 5 1643 539 263 7 0 chr5 138729730 138729867 -13807392 - ID_B1 SINE B4 -2 222 85 5 1643 280 320 74 62 chr5 138729867 138730110 -13807149 - L1MEe LINE L1 -5545 574 329 5 1643 322 250 73 42 chr5 138730801 138730897 -13806362 - PB1D7 SINE Alu -7 113 15 5 1643 1154 62 7 0 chr5 138731574 138731720 -13805539 - B1_Mus2 SINE Alu 0 147 1 5 1643 22 0 0 0 chr5 138732460 138732482 -13804777 + AT_rich Low_complexity Low_complexity 1 22 0 5 1643 272 288 117 41 chr5 138733025 138733170 -13804089 + MIRb SINE MIR 2 157 -111 5 1643 22 0 0 0 chr5 138733251 138733273 -13803986 + AT_rich Low_complexity Low_complexity 1 22 0 5 1643 282 340 53 40 chr5 138733364 138733634 -13803625 - MTEb LTR MaLR -14 365 87 5 1643 228 205 0 0 chr5 138733741 138733780 -13803479 + C-rich Low_complexity Low_complexity 1 39 0 5 1643 498 108 0 0 chr5 138733780 138733854 -13803405 + (TG)n Simple_repeat Simple_repeat 2 75 0 6 1643 280 347 28 0 chr5 138734067 138734139 -13803120 - ID4_ SINE ID 0 83 10 6 1643 685 236 64 0 chr5 138734335 138734475 -13802784 + B1F2 SINE Alu 1 149 0 6 1643 277 219 27 14 chr5 138734802 138734876 -13802383 + MER46C DNA MER2_type 264 338 0 6 1643 260 263 143 57 chr5 138735434 138735539 -13801720 - PB1D10 SINE Alu -3 114 1 6 1643 354 260 10 39 chr5 138735713 138735817 -13801442 - MER20 DNA MER1_type -55 164 64 6 1643 1085 290 98 9 chr5 138735843 138736271 -13800988 - Lx8 LINE L1 0 7473 7008 6 1643 481 263 93 0 chr5 138736422 138736540 -13800719 + RSINE1 SINE B4 2 130 -35 6 1643 669 291 23 0 chr5 138736683 138736855 -13800404 - B3A SINE B2 -22 176 1 6 1643 215 170 0 21 chr5 138739922 138739970 -13797289 + T-rich Low_complexity Low_complexity 2 48 0 6 1643 737 187 14 1 chr5 138741787 138741934 -13795325 - B1_Mur4 SINE Alu -1 149 1 6 1643 407 283 59 70 chr5 138741934 138741974 -13795285 - B4A SINE B4 -214 78 41 6 1643 200 360 140 0 chr5 138743160 138743260 -13793999 - L2a LINE L2 -20 3406 3293 6 1643 274 45 0 43 chr5 138743363 138743409 -13793850 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 6 1643 849 168 0 0 chr5 138743407 138743562 -13793697 + T-rich Low_complexity Low_complexity 3 157 0 6 1643 528 237 17 17 chr5 138743949 138744069 -13793190 - PB1D9 SINE Alu 0 120 1 6 1643 1757 149 145 9 chr5 138744145 138744483 -13792776 - ORR1C2 LTR MaLR 0 384 1 6 1643 21 82 0 0 chr5 138744539 138744588 -13792671 + AT_rich Low_complexity Low_complexity 1 49 0 6 1643 828 167 115 0 chr5 138744588 138744762 -13792497 - B3 SINE B2 -15 201 8 6 1643 495 261 82 0 chr5 138744837 138744971 -13792288 - RSINE1 SINE B4 -17 148 4 6 1643 243 290 0 0 chr5 138745008 138745070 -13792189 + ID4_ SINE ID 9 70 -13 6 1643 195 45 91 0 chr5 138746339 138746383 -13790876 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 6 1643 1070 56 21 21 chr5 138746387 138746532 -13790727 - B1_Mus1 SINE Alu 0 148 4 6 1643 234 176 96 108 chr5 138746542 138746625 -13790634 - L1MB7 LINE L1 -1 6183 6102 6 1643 239 241 69 0 chr5 138746692 138746750 -13790509 - B3A SINE B2 -131 67 6 6 1643 766 179 20 7 chr5 138746787 138746933 -13790326 - B1_Mur3 SINE Alu 0 149 2 6 1643 331 314 24 42 chr5 138746997 138747163 -13790096 - RSINE1 SINE B4 0 165 3 6 1643 1063 256 165 21 chr5 138747163 138747642 -13789617 - L1MB7 LINE L1 -110 6074 5527 6 1643 316 269 0 25 chr5 138747642 138747722 -13789537 - RMER20B LTR ERVK -25 602 525 6 1643 1516 223 232 6 chr5 138747724 138748212 -13789047 - RMER20B LTR ERVK -29 598 1 6 1643 248 289 51 15 chr5 138748221 138748358 -13788901 - L1MB7 LINE L1 -662 5522 5381 6 1643 831 42 217 0 chr5 138748379 138748499 -13788760 - B1_Mus2 SINE Alu 0 147 2 6 1643 536 265 30 8 chr5 138748563 138748696 -13788563 - ID_B1 SINE B4 -3 221 86 6 1643 549 236 138 16 chr5 138748700 138748954 -13788305 - L1MB7 LINE L1 -813 5333 5049 6 1643 1520 16 5 26 chr5 138750570 138750761 -13786498 - L1Md_F2 LINE L1 -2 6580 6394 6 1643 547 210 101 9 chr5 138750859 138750990 -13786269 + B1F1 SINE Alu 3 142 -7 6 1643 1178 41 14 0 chr5 138751024 138751170 -13786089 + B1_Mus1 SINE Alu 1 148 0 6 1643 4903 52 3 2 chr5 138751819 138752417 -13784842 - L1_Mus1 LINE L1 0 6567 5969 6 1643 5940 76 20 8 chr5 138754499 138755295 -13781964 - RLTR13D1 LTR ERVK 0 806 1 6 1643 1712 147 128 39 chr5 138755552 138755912 -13781347 - MTB LTR MaLR -8 392 1 6 1643 427 228 76 19 chr5 138755994 138756108 -13781151 + B1F1 SINE Alu 1 112 -8 6 1643 22 56 0 0 chr5 138756130 138756166 -13781093 + AT_rich Low_complexity Low_complexity 1 36 0 6 1643 1040 191 270 27 chr5 138756232 138756528 -13780731 - ORR1D2 LTR MaLR -2 368 1 6 1643 37230 47 4 3 chr5 138756565 138759106 -13778153 - L1Md_F3 LINE L1 -4 6580 4044 6 1643 2389 104 79 98 chr5 138759106 138759597 -13777662 + RLTR45 LTR ERVK 1 482 0 6 1643 37230 72 6 8 chr5 138759597 138763226 -13774033 - L1Md_F3 LINE L1 -1840 4043 416 6 1643 249 289 40 0 chr5 138763756 138763832 -13773427 - B4A SINE B4 -213 79 1 6 1643 1214 201 9 0 chr5 138763847 138764061 -13773198 - B3 SINE B2 0 216 1 6 1643 694 239 55 0 chr5 138764065 138764228 -13773031 - B3A SINE B2 0 198 27 6 1643 3812 178 54 138 chr5 138764284 138765362 -13771897 - RMER1B Other Other -14 1052 66 6 1643 3356 233 79 33 chr5 138765724 138766025 -13771234 - Lx5 LINE L1 0 7058 6771 6 1643 3769 39 5 0 chr5 138766025 138766459 -13770800 + RLTR10C LTR ERVK 1 436 0 6 1643 4763 167 61 8 chr5 138766459 138767358 -13769901 - Lx5 LINE L1 -288 6770 5765 6 1643 2225 140 46 0 chr5 138767363 138767735 -13769524 - Lx5 LINE L1 -527 5350 4962 6 1643 7176 88 12 47 chr5 138767771 138769517 -13767742 + L1_Mus3 LINE L1 4931 6613 -25 6 1643 7630 83 37 2 chr5 138769555 138770605 -13766654 + Lx3_Mus LINE L1 5911 6997 -12 6 1643 411 254 159 0 chr5 138770609 138770735 -13766524 - MTE-int LTR MaLR -253 1327 1182 6 1643 461 274 108 26 chr5 138770768 138770963 -13766296 - MTEa LTR MaLR 0 379 169 6 1643 388 258 90 16 chr5 138770968 138771090 -13766169 + B4A SINE B4 14 144 -148 6 1643 1098 67 0 0 chr5 138771567 138771701 -13765558 + B1_Mus2 SINE Alu 2 135 -12 6 1643 354 23 0 0 chr5 138771702 138771745 -13765514 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1643 569 236 144 12 chr5 138771871 138772038 -13765221 + ID_B1 SINE B4 26 214 -10 6 1643 464 277 67 52 chr5 138772268 138772462 -13764797 - B3A SINE B2 0 198 2 6 1643 615 245 21 21 chr5 138772485 138772627 -13764632 - B1F SINE Alu -1 148 7 6 1643 469 264 154 32 chr5 138772766 138773013 -13764246 + RLTR10A LTR ERVK 135 411 0 6 1643 434 181 54 54 chr5 138773029 138773140 -13764119 + RLTR45-int LTR ERVK 318 428 -1559 6 1643 390 272 41 41 chr5 138773387 138773556 -13763703 + IAP-d-int LTR ERVK 2225 2393 -4149 6 1643 2170 325 60 48 chr5 138773559 138775518 -13761741 + IAP-d-int LTR ERVK 3224 5207 -1335 6 1643 1863 207 17 30 chr5 138775646 138776133 -13761126 + RLTR45-int LTR ERVK 6522 7042 -202 6 1643 495 262 162 29 chr5 138776173 138776413 -13760846 + RLTR10A LTR ERVK 140 411 0 6 1643 1280 226 32 18 chr5 138776776 138777060 -13760199 + B4A SINE B4 5 292 0 6 1643 826 249 62 0 chr5 138777682 138777891 -13759368 + ID_B1 SINE B4 1 222 -2 6 1643 582 15 0 0 chr5 138777898 138777965 -13759294 + (TA)n Simple_repeat Simple_repeat 1 67 0 6 1643 216 86 0 0 chr5 138778866 138778901 -13758358 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1643 953 101 0 48 chr5 138778901 138779047 -13758212 - B1_Mur4 SINE Alu -11 139 1 6 1643 372 220 121 0 chr5 138779185 138779276 -13757983 - RSINE1 SINE B4 -39 126 25 6 1643 1133 84 0 0 chr5 138779500 138779643 -13757616 + B1_Mus1 SINE Alu 3 145 -3 6 1643 414 0 0 0 chr5 138779770 138779816 -13757443 + (TC)n Simple_repeat Simple_repeat 1 46 0 6 1643 381 241 26 122 chr5 138780236 138780392 -13756867 - B4 SINE B4 -114 178 38 6 1643 21 0 0 0 chr5 138780393 138780414 -13756845 + AT_rich Low_complexity Low_complexity 1 21 0 6 1643 1091 236 137 40 chr5 138780744 138781190 -13756069 - RMER5 LTR ERV1 -15 519 31 6 1643 1567 40 0 57 chr5 138781233 138781445 -13755814 - L1_Mus1 LINE L1 0 6567 6368 6 1643 188 176 157 29 chr5 138781476 138781546 -13755713 + MIR SINE MIR 46 124 -84 6 1643 186 219 149 45 chr5 138781663 138781730 -13755529 + MIRb SINE MIR 2 75 -193 6 1643 232 296 0 90 chr5 138782465 138782610 -13754649 + GA-rich Low_complexity Low_complexity 2 133 0 6 1643 928 232 47 44 chr5 138785160 138785502 -13751757 - RLTR15 LTR ERVK -16 343 1 6 1643 2952 151 81 42 chr5 138787172 138787775 -13749484 - RMER20B LTR ERVK 0 627 1 6 1643 3534 199 58 31 chr5 138787786 138788528 -13748731 - MERVK26-int LTR ERVK -1 6918 6157 6 1643 1421 222 40 3 chr5 138789087 138789124 -13748135 - Lx3_Mus LINE L1 -1083 5926 5880 6 1643 2792 225 7 14 chr5 138789124 138789692 -13747567 - Lx5 LINE L1 -5 7045 6482 6 1643 3448 163 42 10 chr5 138789692 138790336 -13746923 - Lx3_Mus LINE L1 -1130 5879 5224 6 1643 312 213 0 0 chr5 138790822 138790883 -13746376 + B3 SINE B2 5 65 -151 6 1643 2775 77 3 21 chr5 138791431 138791817 -13745442 - L1Md_F2 LINE L1 0 6582 6204 6 1643 8426 118 32 11 chr5 138791819 138793897 -13743362 - L1Md_F LINE L1 -3559 2324 214 6 1643 611 221 0 16 chr5 138794069 138794193 -13743066 + RSINE1 SINE B4 2 123 -42 6 1643 1187 184 10 0 chr5 138794550 138794757 -13742502 + B3 SINE B2 2 210 -6 6 1643 3255 102 13 80 chr5 138794802 138795343 -13741916 - Lx3_Mus LINE L1 0 7009 6505 6 1643 25 75 0 0 chr5 138795658 138795711 -13741548 + AT_rich Low_complexity Low_complexity 1 53 0 6 1643 288 305 83 38 chr5 138795716 138795873 -13741386 - B3 SINE B2 -13 203 40 6 1643 625 184 39 13 chr5 138795869 138796023 -13741236 + RMER4B LTR ERVK 17 174 -411 6 1643 446 236 71 42 chr5 138796146 138796229 -13741030 + RMER17C LTR ERVK 1 80 -330 6 1643 649 53 11 11 chr5 138796229 138796324 -13740935 + (TC)n Simple_repeat Simple_repeat 2 96 0 6 1643 446 236 71 42 chr5 138796324 138796408 -13740851 + RMER17C LTR ERVK 81 173 -237 6 1643 299 249 45 42 chr5 138796542 138796733 -13740526 + RMER4B LTR ERVK 358 583 -2 6 1643 5372 85 22 66 chr5 138797975 138798915 -13738344 - RLTR13D6 LTR ERVK 0 902 4 6 1643 823 171 14 14 chr5 138799948 138800090 -13737169 - B1_Mur2 SINE Alu -6 143 2 6 1643 428 312 77 102 chr5 138800420 138800616 -13736643 - B4 SINE B4 0 292 102 6 1643 363 235 97 10 chr5 138800612 138800715 -13736544 - B1_Mur1 SINE Alu -28 121 10 6 1643 386 303 61 40 chr5 138800656 138800804 -13736455 - B4 SINE B4 -132 160 10 6 1643 259 276 204 7 chr5 138801784 138801926 -13735333 + B4 SINE B4 10 179 -113 6 1643 221 245 0 0 chr5 138801999 138802052 -13735207 + (CATA)n Simple_repeat Simple_repeat 3 55 0 6 1643 402 100 0 0 chr5 138802108 138802168 -13735091 + (CA)n Simple_repeat Simple_repeat 1 60 0 6 1643 454 278 7 7 chr5 138802264 138802409 -13734850 + ID_B1 SINE B4 80 224 0 6 1643 225 0 0 0 chr5 138802668 138802693 -13734566 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1643 558 41 0 0 chr5 138802694 138802767 -13734492 + (GA)n Simple_repeat Simple_repeat 1 73 0 7 1643 262 324 8 105 chr5 138803641 138803694 -13733565 + ID_B1 SINE B4 105 151 -73 7 1643 930 177 94 0 chr5 138803694 138803897 -13733362 + URR1A DNA MER1_type 5 226 0 7 1643 262 324 8 105 chr5 138803897 138803967 -13733292 + ID_B1 SINE B4 152 216 -8 7 1643 1775 42 5 0 chr5 138803976 138804188 -13733071 - L1_Mus1 LINE L1 -760 5807 5595 7 1643 202 29 28 28 chr5 138804409 138804445 -13732814 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 7 1644 1757 229 79 26 chr5 138807151 138807644 -13729615 - RLTR11A LTR ERVK 0 528 10 7 1644 3291 56 0 5 chr5 138808677 138809075 -13728184 - MTA_Mm LTR MaLR 0 396 1 7 1644 345 131 0 0 chr5 138809269 138809330 -13727929 + (T)n Simple_repeat Simple_repeat 1 61 0 7 1644 39345 41 11 0 chr5 138809332 138815542 -13721717 - L1Md_T LINE L1 0 6582 306 7 1644 27 0 0 0 chr5 138815547 138815574 -13721685 + AT_rich Low_complexity Low_complexity 1 27 0 7 1644 2787 192 21 2 chr5 138815612 138816123 -13721136 - Lx4A LINE L1 -107 6951 6431 7 1644 604 163 95 10 chr5 138816112 138816246 -13721013 - L1_Mur3 LINE L1 -789 5655 5512 7 1644 3388 207 88 46 chr5 138816252 138817468 -13719791 + RMER3D-int LTR ERVK 1574 2840 -2 7 1644 1783 176 32 44 chr5 138817470 138817731 -13719528 + RLTR31_Mm LTR ERVK 1 266 -295 7 1644 4978 31 7 0 chr5 138817731 138818310 -13718949 - L1Md_T LINE L1 -2 6580 5998 7 1644 1783 191 22 88 chr5 138818310 138818564 -13718695 + RLTR31_Mm LTR ERVK 211 444 -140 7 1644 221 219 0 0 chr5 138818665 138818706 -13718553 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1644 687 239 38 54 chr5 138818716 138818977 -13718282 - L1_Mur3 LINE L1 -1247 4633 4377 7 1644 292 375 13 32 chr5 138819309 138819466 -13717793 + RSINE1 SINE B4 12 165 0 7 1644 871 84 0 0 chr5 138819818 138819925 -13717334 + U6 snRNA snRNA 1 107 0 7 1644 2738 49 0 0 chr5 138819925 138820253 -13717006 + L1_Mus1 LINE L1 6240 6567 0 7 1644 799 311 99 3 chr5 138820512 138820844 -13716415 + ORR1D1 LTR MaLR 9 372 -2 7 1644 669 253 213 3 chr5 138820846 138821150 -13716109 + ORR1D1-int LTR MaLR 1 368 -2 7 1644 303 295 45 23 chr5 138821336 138821468 -13715791 + CT-rich Low_complexity Low_complexity 1 135 0 7 1644 4105 171 28 3 chr5 138821982 138823293 -13713966 + L1_Mur2 LINE L1 518 1867 -4010 7 1644 294 283 95 38 chr5 138823522 138823680 -13713579 - RLTR16 LTR ERVK -207 298 132 7 1644 2890 212 33 17 chr5 138823686 138824286 -13712973 + Lx4A LINE L1 6220 6829 -229 7 1644 674 204 20 20 chr5 138824312 138824462 -13712797 + Lx4A LINE L1 6901 7050 -8 7 1644 240 320 41 0 chr5 138824490 138824587 -13712672 + B1F2 SINE Alu 7 107 -42 7 1644 791 282 29 5 chr5 138825965 138826175 -13711084 + Lx6 LINE L1 6983 7197 -263 7 1644 378 0 0 0 chr5 138826177 138826219 -13711040 + (TA)n Simple_repeat Simple_repeat 2 43 0 7 1644 806 247 85 21 chr5 138827229 138827510 -13709749 + RMER20B LTR ERVK 132 430 -197 7 1644 1562 186 44 10 chr5 138827718 138828016 -13709243 + Lx3B LINE L1 6664 6971 -2 7 1644 22 0 0 0 chr5 138828044 138828066 -13709193 + AT_rich Low_complexity Low_complexity 1 22 0 7 1644 248 279 70 51 chr5 138828692 138828907 -13708352 + Lx9 LINE L1 7426 7644 0 7 1644 509 170 93 6 chr5 138829029 138829187 -13708072 + B2_Mm2 SINE B2 3 189 -4 7 1644 1026 109 0 7 chr5 138829628 138829776 -13707483 - B1_Mm SINE Alu 0 147 1 7 1644 374 307 26 74 chr5 138831067 138831257 -13706002 + MTD LTR MaLR 81 261 -158 7 1644 425 250 25 16 chr5 138831323 138831445 -13705814 + MTD LTR MaLR 266 388 -31 7 1644 373 205 0 43 chr5 138831839 138831931 -13705328 + Lx6 LINE L1 7373 7460 0 7 1644 510 338 10 0 chr5 138832139 138832346 -13704913 + B3 SINE B2 5 213 -3 7 1644 189 286 49 61 chr5 138832923 138833005 -13704254 - L2 LINE L2 -1990 1429 1349 7 1644 3992 190 57 35 chr5 138833452 138834701 -13702558 + Lx3C LINE L1 1031 2283 -1631 7 1644 1929 126 0 0 chr5 138834699 138834993 -13702266 - Lx LINE L1 -137 5746 5453 7 1644 5527 131 27 10 chr5 138835002 138835897 -13701362 + Lx LINE L1 5745 6654 0 7 1644 4689 195 29 23 chr5 138835897 138837149 -13700110 + Lx3C LINE L1 2282 3608 -2269 7 1644 3214 157 5 52 chr5 138837143 138837674 -13699585 + Lx3C LINE L1 5296 5811 -75 7 1644 1126 89 0 0 chr5 138837674 138837820 -13699439 - B1_Mm SINE Alu 0 147 2 7 1644 3214 166 14 61 chr5 138837820 138838069 -13699190 + Lx3C LINE L1 5809 6050 -926 7 1644 1188 247 72 31 chr5 138838093 138838454 -13698805 + BGLII_B LTR ERVK 11 435 -6 7 1644 4589 123 29 22 chr5 138838454 138839258 -13698001 - RMER17D2 LTR ERVK 0 809 1 7 1644 1154 271 51 128 chr5 138839258 138839502 -13697757 + BGLII_B LTR ERVK 322 552 -1 7 1644 4449 181 58 5 chr5 138839502 138840387 -13696872 + Lx3C LINE L1 6043 6974 -2 7 1644 3145 44 23 8 chr5 138840464 138840854 -13696405 - MTA_Mm LTR MaLR 0 396 1 7 1644 216 67 0 0 chr5 138840962 138840992 -13696267 + (TG)n Simple_repeat Simple_repeat 2 31 0 7 1644 387 278 119 65 chr5 138841001 138841186 -13696073 - L1_Mur3 LINE L1 -1866 4011 3813 7 1644 290 67 22 0 chr5 138841186 138841231 -13696028 + (TA)n Simple_repeat Simple_repeat 2 47 0 7 1644 387 256 125 79 chr5 138841231 138841334 -13695925 - L1_Mur3 LINE L1 -2056 3824 3705 7 1644 227 294 62 26 chr5 138841362 138841589 -13695670 - L1_Mur3 LINE L1 -2146 3734 3500 7 1644 1154 53 0 0 chr5 138841625 138841776 -13695483 + ORR1A1 LTR MaLR 1 151 -195 7 1644 13308 65 15 3 chr5 138841776 138843544 -13693715 + ORR1A1-int LTR MaLR 3 1792 0 7 1644 2854 52 0 6 chr5 138843544 138843892 -13693367 + ORR1A1 LTR MaLR 1 346 0 7 1644 238 336 0 7 chr5 138843892 138844039 -13693220 - L1_Mur3 LINE L1 -2447 3433 3288 7 1644 668 264 61 45 chr5 138844055 138844368 -13692891 + L1_Mur3 LINE L1 4254 4571 -1309 7 1644 368 216 64 50 chr5 138844802 138844943 -13692316 + MYSERV6-int LTR ERVK 6532 6674 -2285 7 1644 2794 215 115 28 chr5 138845141 138846140 -13691119 + MYSERV16_I-int LTR ERVK 987 2072 -254 7 1644 2226 58 31 0 chr5 138846150 138846444 -13690815 - ORR1A1 LTR MaLR -43 303 1 7 1644 26767 119 18 3 chr5 138846450 138848146 -13689113 + L1_Mus3 LINE L1 1148 2866 -3017 7 1644 759 22 0 0 chr5 138848146 138848235 -13689024 + (GAAA)n Simple_repeat Simple_repeat 3 91 0 7 1644 26767 116 35 3 chr5 138848235 138851869 -13685390 + L1_Mus3 LINE L1 2867 6628 -10 7 1644 236 70 32 81 chr5 138851927 138851989 -13685270 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1644 339 204 101 50 chr5 138852604 138852743 -13684516 + Lx9 LINE L1 7426 7571 -73 7 1644 28 71 0 0 chr5 138852760 138852816 -13684443 + AT_rich Low_complexity Low_complexity 1 56 0 7 1644 281 179 35 18 chr5 138852926 138852983 -13684276 + B2_Mm2 SINE B2 6 63 -132 7 1644 201 279 16 0 chr5 138854667 138854728 -13682531 + L3 LINE CR1 2109 2170 -2319 7 1644 316 359 22 83 chr5 138854773 138855001 -13682258 + MTD LTR MaLR 48 261 -158 7 1644 603 222 29 7 chr5 138855063 138855199 -13682060 + MTD LTR MaLR 266 404 -15 7 1644 10473 188 25 15 chr5 138855632 138858215 -13679044 + Lx3C LINE L1 859 3452 -2434 7 1644 207 0 0 0 chr5 138858215 138858238 -13679021 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1644 10473 184 26 13 chr5 138858238 138858383 -13678876 + Lx3C LINE L1 3453 3614 -2272 7 1644 1728 197 23 234 chr5 138858380 138858677 -13678582 + Lx3C LINE L1 5287 5587 -290 7 1644 2080 43 4 0 chr5 138858677 138858932 -13678327 + L1_Mus1 LINE L1 6311 6566 -1 7 1644 363 67 0 0 chr5 138858935 138858995 -13678264 + L1Md_F2 LINE L1 6523 6582 0 7 1644 2645 172 12 60 chr5 138858995 138859608 -13677651 + Lx3C LINE L1 5588 6051 -925 7 1644 600 225 32 42 chr5 138859668 138859858 -13677401 + BGLII_B LTR ERVK 120 307 -134 7 1644 2836 210 49 12 chr5 138859867 138860441 -13676818 + RLTR17 LTR ERVK 98 692 0 7 1644 689 241 128 40 chr5 138860446 138860775 -13676484 + RLTR31_Mur LTR ERVK 184 541 -12 7 1644 802 251 98 14 chr5 138860833 138861192 -13676067 + Lx8 LINE L1 4184 4572 -1308 7 1644 248 204 0 0 chr5 138861323 138861367 -13675892 + MT2B LTR ERVL 197 240 -361 7 1644 351 164 225 14 chr5 138861509 138861651 -13675608 + MYSERV6-int LTR ERVK 6424 6595 -2364 7 1644 758 182 0 26 chr5 138861935 138862127 -13675132 + MYSERV16_I-int LTR ERVK 1051 1237 -1089 7 1644 2925 105 0 27 chr5 138862128 138862568 -13674691 - RLTR10C LTR ERVK -8 428 1 7 1644 222 159 23 0 chr5 138862602 138862646 -13674613 + (TA)n Simple_repeat Simple_repeat 2 46 0 7 1644 216 97 0 0 chr5 138862650 138862681 -13674578 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1644 1534 227 85 7 chr5 138862681 138863142 -13674117 + MYSERV-int LTR ERVK 5461 5957 -593 7 1644 364 159 14 0 chr5 138863142 138863211 -13674048 - RMER19B LTR ERVK -832 70 1 7 1644 708 147 15 15 chr5 138863211 138863341 -13673918 + RLTR11A2 LTR ERVK 398 527 0 7 1644 342 301 123 48 chr5 138863342 138863635 -13673624 + Lx8 LINE L1 5600 5914 -1559 7 1644 606 307 51 29 chr5 138863964 138864239 -13673020 + Lx8 LINE L1 6332 6612 -861 7 1644 625 325 38 52 chr5 138864381 138864800 -13672459 + Lx8 LINE L1 6906 7318 -155 7 1644 391 338 72 38 chr5 138864892 138865129 -13672130 + L1MC1 LINE L1 6014 6258 -75 7 1644 2380 93 22 0 chr5 138865129 138865451 -13671808 + RLTR13C2 LTR ERVK 1 329 -479 7 1644 1143 96 24 19 chr5 138865451 138865663 -13671596 + ETnERV2-int LTR ERVK 2975 3187 -4219 7 1644 6081 106 23 21 chr5 138865655 138866661 -13670598 + RLTR45-int LTR ERVK 5064 6071 -1173 7 1644 1550 136 34 0 chr5 138866675 138866939 -13670320 + ETnERV3-int LTR ERVK 5529 5801 -7 7 1644 5835 62 66 0 chr5 138866949 138867707 -13669552 + RLTR13C2 LTR ERVK 1 808 0 7 1644 25132 108 6 10 chr5 138867879 138871588 -13665671 - L1Md_F LINE L1 -626 5257 1554 7 1644 1070 94 0 0 chr5 138871588 138871726 -13665533 - B1_Mus1 SINE Alu -10 138 1 7 1644 25132 152 53 17 chr5 138871726 138872863 -13664396 - L1Md_F LINE L1 -4330 1553 380 7 1644 468 198 17 67 chr5 138872871 138872982 -13664277 + B1_Mur4 SINE Alu 38 142 -8 7 1644 207 0 0 0 chr5 138872982 138873005 -13664254 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1644 11301 82 89 52 chr5 138873020 138873787 -13663472 - MusHAL1 LINE L1 -282 2430 1641 7 1644 291 54 0 0 chr5 138873787 138873824 -13663435 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 7 1644 1019 90 14 0 chr5 138873826 138873970 -13663289 - B1_Mus1 SINE Alu 0 148 3 7 1644 11301 82 89 52 chr5 138873970 138875322 -13661937 - MusHAL1 LINE L1 -1072 1640 230 7 1644 1225 209 7 63 chr5 138875306 138875576 -13661683 - L1VL4 LINE L1 -6047 255 1 7 1644 294 29 0 0 chr5 138875587 138875622 -13661637 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1644 1151 43 0 0 chr5 138875622 138875760 -13661499 - B1_Mm SINE Alu -9 138 1 7 1644 230 260 0 0 chr5 138875892 138875965 -13661294 - L1M2 LINE L1 -1153 4987 4915 7 1644 435 279 31 18 chr5 138876006 138876229 -13661030 - L1M2 LINE L1 -1347 4796 4571 7 1644 547 136 0 12 chr5 138876235 138876317 -13660942 + B1_Mus2 SINE Alu 38 118 -29 7 1644 873 54 0 0 chr5 138876318 138876429 -13660830 + (GAAA)n Simple_repeat Simple_repeat 4 114 0 7 1644 291 262 0 0 chr5 138876429 138876509 -13660750 - L1_Mur3 LINE L1 -1373 4507 4428 7 1644 367 101 0 25 chr5 138876571 138876652 -13660607 + (TTTG)n Simple_repeat Simple_repeat 2 80 0 7 1644 1214 41 14 0 chr5 138876662 138876807 -13660452 - B1_Mm SINE Alu 0 147 1 7 1644 417 196 41 100 chr5 138876807 138876977 -13660282 - L1_Mur3 LINE L1 -1497 4383 4224 7 1644 392 0 0 20 chr5 138878472 138878521 -13658738 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 7 1644 1140 184 36 18 chr5 138878911 138879132 -13658127 - ORR1C1 LTR MaLR 0 378 154 7 1644 366 255 42 11 chr5 138879315 138879410 -13657849 - PB1D7 SINE Alu -21 99 2 7 1644 949 265 55 104 chr5 138879442 138879770 -13657489 + ORR1D2 LTR MaLR 59 370 0 8 1644 438 335 71 11 chr5 138879957 138880141 -13657118 + MIRb SINE MIR 55 249 -19 8 1644 399 279 19 0 chr5 138880156 138880260 -13656999 + PB1D10 SINE Alu 12 117 0 8 1644 342 333 163 0 chr5 138881061 138881202 -13656057 + RSINE1 SINE B4 2 165 0 8 1644 2122 143 18 72 chr5 138881222 138881622 -13655637 + ORR1C1 LTR MaLR 1 378 0 8 1644 237 261 14 28 chr5 138881789 138881860 -13655399 - MER5B DNA MER1_type -29 149 80 8 1644 567 43 0 0 chr5 138882134 138882204 -13655055 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 8 1644 290 275 0 0 chr5 138883844 138883913 -13653346 - Lx8 LINE L1 -250 7223 7155 8 1644 257 262 141 12 chr5 138884000 138884085 -13653174 - PB1D10 SINE Alu -1 116 21 8 1644 262 313 9 35 chr5 138884683 138884799 -13652460 - PB1D7 SINE Alu -8 112 1 8 1644 330 45 0 0 chr5 138885096 138885140 -13652119 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 8 1644 1592 149 36 32 chr5 138885536 138885917 -13651342 - RLTR11A LTR ERVK -3 525 165 8 1644 320 238 10 10 chr5 138885993 138886095 -13651164 + MurSatRep1 Unknown Unknown 627 728 -1409 8 1644 267 302 61 32 chr5 138886330 138886607 -13650652 - L1MA7 LINE L1 -134 6157 5873 8 1644 354 290 83 65 chr5 138886856 138887085 -13650174 - L1MA7 LINE L1 -1299 4844 4612 8 1644 308 241 53 106 chr5 138887089 138887335 -13649924 - L1M2 LINE L1 -1403 4740 4508 8 1644 2058 160 15 15 chr5 138887358 138887763 -13649496 - Lx4B LINE L1 -110 6948 6544 8 1644 284 330 97 9 chr5 138887974 138888087 -13649172 - B1F SINE Alu 0 149 27 8 1644 233 307 53 0 chr5 138888179 138888254 -13649005 + ID4_ SINE ID 2 80 -3 8 1644 24 32 0 0 chr5 138888256 138888287 -13648972 + AT_rich Low_complexity Low_complexity 1 31 0 8 1644 590 178 83 26 chr5 138888330 138888486 -13648773 - Lx7 LINE L1 -1 7695 7531 8 1644 251 47 70 0 chr5 138889385 138889428 -13647831 + (TAAAAA)n Simple_repeat Simple_repeat 2 47 0 8 1644 761 124 7 65 chr5 138889550 138889688 -13647571 + B1_Mus2 SINE Alu 9 138 -9 8 1644 279 0 0 0 chr5 138889688 138889719 -13647540 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 8 1644 202 271 17 0 chr5 138889728 138889787 -13647472 + GA-rich Low_complexity Low_complexity 3 62 0 8 1644 22 0 0 0 chr5 138889889 138889911 -13647348 + AT_rich Low_complexity Low_complexity 1 22 0 8 1644 312 194 21 21 chr5 138890812 138890907 -13646352 + CT-rich Low_complexity Low_complexity 2 96 0 8 1644 24 0 0 0 chr5 138891074 138891098 -13646161 + AT_rich Low_complexity Low_complexity 1 24 0 8 1644 579 188 357 0 chr5 138892131 138892285 -13644974 + B3 SINE B2 2 210 -6 8 1644 367 358 70 50 chr5 138892729 138893214 -13644045 + L1M2 LINE L1 3257 3751 -2392 8 1644 1831 319 126 28 chr5 138893577 138894695 -13642564 - Lx8 LINE L1 -54 7419 6204 8 1644 270 116 0 0 chr5 138894695 138894738 -13642521 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 8 1644 1831 311 64 36 chr5 138894738 138894765 -13642494 - Lx8 LINE L1 -1270 6203 6180 8 1644 477 0 0 0 chr5 138894765 138894818 -13642441 + (TCCA)n Simple_repeat Simple_repeat 2 54 0 8 1644 1831 311 64 36 chr5 138894818 138895275 -13641984 - Lx8 LINE L1 -1294 6179 5693 8 1644 574 289 47 0 chr5 138895279 138895469 -13641790 - Lx8 LINE L1 -573 6900 6702 8 1644 31 0 0 0 chr5 138895588 138895619 -13641640 + AT_rich Low_complexity Low_complexity 1 31 0 8 1644 27 49 0 0 chr5 138896635 138896676 -13640583 + AT_rich Low_complexity Low_complexity 1 41 0 8 1644 438 312 37 59 chr5 138896744 138896931 -13640328 + B3A SINE B2 7 189 -9 8 1644 371 251 30 30 chr5 138897369 138897759 -13639500 + MMSAT4 Satellite Satellite 1 390 -6 8 1644 387 261 19 19 chr5 138897789 138898165 -13639094 + MMSAT4 Satellite Satellite 1 376 -1 8 1644 204 277 169 0 chr5 138899337 138899420 -13637839 - MIRc SINE MIR -167 101 5 8 1644 271 307 82 38 chr5 138899822 138899981 -13637278 + RMER15 LTR ERVL 403 568 -7 8 1644 315 0 0 0 chr5 138900757 138900792 -13636467 + (TG)n Simple_repeat Simple_repeat 2 36 0 8 1644 641 202 8 0 chr5 138901023 138901142 -13636117 + URR1B DNA MER1_type 42 161 -64 8 1644 24 32 0 0 chr5 138901882 138901913 -13635346 + AT_rich Low_complexity Low_complexity 1 31 0 8 1644 1047 226 111 8 chr5 138901955 138902308 -13634951 - Lx9 LINE L1 -6 7638 7250 8 1644 739 260 29 29 chr5 138902326 138902532 -13634727 - B3 SINE B2 -9 207 2 8 1644 604 228 9 0 chr5 138902737 138902851 -13634408 + B1_Mur4 SINE Alu 14 128 -22 8 1644 4861 23 0 4 chr5 138903121 138903684 -13633575 - L1Md_A LINE L1 0 6582 6022 8 1644 316 336 69 0 chr5 138903822 138903953 -13633306 - B1F2 SINE Alu -9 140 1 8 1644 256 269 78 69 chr5 138904395 138904511 -13632748 - MTEa LTR MaLR -2 377 261 8 1644 567 0 0 0 chr5 138906013 138906076 -13631183 + (TC)n Simple_repeat Simple_repeat 1 63 0 8 1644 24 0 0 0 chr5 138906231 138906255 -13631004 + AT_rich Low_complexity Low_complexity 1 24 0 8 1644 733 271 132 16 chr5 138906262 138906404 -13630855 - Lx9 LINE L1 -42 7602 7419 8 1644 486 0 0 0 chr5 138906404 138906458 -13630801 + (TG)n Simple_repeat Simple_repeat 2 55 0 8 1644 733 271 132 16 chr5 138906458 138906679 -13630580 - Lx9 LINE L1 -226 7418 7198 8 1644 21 57 0 0 chr5 138906694 138906729 -13630530 + AT_rich Low_complexity Low_complexity 1 35 0 8 1644 31 88 0 0 chr5 138906840 138906920 -13630339 + AT_rich Low_complexity Low_complexity 1 80 0 8 1644 360 260 0 0 chr5 138907604 138907681 -13629578 + PB1D10 SINE Alu 27 103 -14 8 1644 5910 73 15 4 chr5 138907838 138909267 -13627992 - L1VL2 LINE L1 -1789 1826 383 8 1644 5300 106 100 8 chr5 138909267 138910114 -13627145 + RLTR13D3 LTR ERVK 1 925 -189 8 1644 329 244 121 22 chr5 138910129 138910307 -13626952 - RLTR4_MM-int LTR ERV1 -2301 5305 5100 8 1644 1242 100 0 0 chr5 138910972 138911152 -13626107 + (GAA)n Simple_repeat Simple_repeat 1 180 0 8 1644 387 0 0 0 chr5 138911947 138911990 -13625269 + (GA)n Simple_repeat Simple_repeat 2 44 0 8 1644 686 312 32 28 chr5 138911998 138912471 -13624788 + RLTR6-int LTR ERV1 6925 7650 -128 8 1644 760 143 128 62 chr5 138912835 138913014 -13624245 - Lx2 LINE L1 -143 6854 6664 8 1644 844 231 66 5 chr5 138914054 138914250 -13623009 - B3 SINE B2 -1 215 8 8 1644 296 280 141 25 chr5 138915847 138915968 -13621291 + B1_Mur2 SINE Alu 1 135 -14 8 1644 203 0 37 0 chr5 138915974 138916001 -13621258 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8 1644 1148 237 111 66 chr5 138916512 138917054 -13620205 - RLTR12A LTR ERVK 0 568 3 8 1644 246 106 106 0 chr5 138917261 138917308 -13619951 + MTD LTR MaLR 1 52 -367 8 1644 1427 237 65 3 chr5 138917388 138917739 -13619520 + MTD LTR MaLR 47 419 0 8 1644 782 234 53 19 chr5 138918210 138918419 -13618840 - B3 SINE B2 0 216 1 8 1644 25100 111 35 1 chr5 138918978 138921936 -13615323 + L1_Mm LINE L1 1649 4731 -1152 8 1644 257 68 0 22 chr5 138921936 138921981 -13615278 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 8 1644 25100 111 35 1 chr5 138921981 138923087 -13614172 + L1_Mm LINE L1 4732 5848 -35 8 1644 2705 69 2 101 chr5 138923087 138923492 -13613767 - RLTR10B2 LTR ERVK 0 365 1 8 1644 35588 88 5 18 chr5 138923492 138924447 -13612812 - MMERVK10C-int LTR ERVK 0 7581 6685 8 1644 315 0 0 0 chr5 138924447 138924482 -13612777 + (TTG)n Simple_repeat Simple_repeat 2 36 0 8 1644 35588 88 5 18 chr5 138924482 138926983 -13610276 - MMERVK10C-int LTR ERVK -897 6684 4196 8 1644 3589 42 50 28 chr5 138926983 138927448 -13609811 - IAPLTR2_Mm LTR ERVK 0 475 1 8 1644 35588 92 8 18 chr5 138927448 138929151 -13608108 - MMERVK10C-int LTR ERVK -3386 4195 1885 8 1644 327 121 17 0 chr5 138929152 138929210 -13608049 - MMERVK10C-int LTR ERVK -5624 1782 1724 8 1644 261 284 49 12 chr5 138929215 138929297 -13607962 - MMERVK10C-int LTR ERVK -4587 819 735 8 1644 985 205 99 57 chr5 138929318 138929618 -13607641 - MMERVK10C-int LTR ERVK -4803 603 312 8 1644 313 130 0 0 chr5 138929707 138929761 -13607498 - MMERVK10C-int LTR ERVK -6629 952 899 8 1644 313 130 0 0 chr5 138929880 138929934 -13607325 - MMERVK10C-int LTR ERVK -6629 952 899 8 205 37210 29 8 6 chr5 138929961 138936325 -13600934 - L1Md_A LINE L1 -2 6580 212 8 1645 558 224 0 0 chr5 138936354 138936510 -13600749 - MMERVK10C-int LTR ERVK -6678 903 748 8 1645 1182 110 8 13 chr5 138936513 138936755 -13600504 - MMERVK10C-int LTR ERVK -7261 320 1 8 1645 2686 59 73 3 chr5 138936755 138937096 -13600163 - RLTR10B2 LTR ERVK 0 365 1 8 1645 5452 75 4 3 chr5 138937096 138937818 -13599441 + L1_Mus1 LINE L1 5844 6566 -1 8 1645 258 57 57 0 chr5 138938023 138938076 -13599183 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 8 1645 967 102 7 0 chr5 138938093 138938240 -13599019 - L1_Mus3 LINE L1 -257 6381 6234 8 1645 1670 82 40 12 chr5 138938254 138938502 -13598757 + L1_Mus3 LINE L1 6379 6633 -5 8 1645 437 235 0 39 chr5 138938539 138938641 -13598618 + B3A SINE B2 10 107 -91 8 1645 349 193 0 178 chr5 138938802 138938903 -13598356 + ORR1E LTR MaLR 49 131 -228 8 1645 351 0 0 0 chr5 138939045 138939084 -13598175 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 8 1645 298 125 36 0 chr5 138939087 138939143 -13598116 + RMER4B LTR ERVK 49 106 -479 8 1645 1404 233 86 15 chr5 138939225 138939963 -13597296 - L1_Mur2 LINE L1 -3884 1993 1122 8 1645 6504 175 30 0 chr5 138940000 138941556 -13595703 - Lx3C LINE L1 -2 6974 5363 8 1645 25 0 0 0 chr5 138943358 138943383 -13593876 + AT_rich Low_complexity Low_complexity 1 25 0 8 1645 207 294 29 19 chr5 138944213 138944317 -13592942 + (AGGTG)n Simple_repeat Simple_repeat 5 109 0 8 1645 7822 103 11 20 chr5 138944414 138945938 -13591321 + L1Md_F2 LINE L1 104 1616 -4267 8 1645 180 0 0 0 chr5 138947657 138947677 -13589582 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1645 28803 81 3 4 chr5 138947677 138951660 -13585599 + L1Md_F2 LINE L1 1604 5585 -298 8 1645 7399 66 20 7 chr5 138951661 138952642 -13584617 + L1Md_F2 LINE L1 5587 6580 -2 8 1645 1023 106 0 0 chr5 138952664 138952815 -13584444 + (GAAA)n Simple_repeat Simple_repeat 3 153 0 8 1645 239 272 42 50 chr5 138954932 138955052 -13582207 + Looper DNA PiggyBac 1425 1543 -15 8 1645 546 311 82 45 chr5 138955540 138956028 -13581231 - L1M2 LINE L1 -754 5389 4884 8 1645 27 73 0 0 chr5 138956609 138956664 -13580595 + AT_rich Low_complexity Low_complexity 1 55 0 8 1645 330 280 96 56 chr5 138957797 138957994 -13579265 - RLTR42-int LTR ERVK -1046 4476 4272 8 1645 513 266 61 0 chr5 138958332 138958546 -13578713 - RLTR42-int LTR ERVK -1283 4239 4013 8 1645 23 54 0 0 chr5 138959300 138959337 -13577922 + AT_rich Low_complexity Low_complexity 1 37 0 8 1645 23 33 0 0 chr5 138960535 138960565 -13576694 + AT_rich Low_complexity Low_complexity 1 30 0 8 1645 24524 135 32 16 chr5 138964723 138966613 -13570646 - Lx LINE L1 0 6654 4738 8 1645 315 0 0 0 chr5 138966613 138966648 -13570611 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 8 1645 24524 161 19 11 chr5 138966648 138970967 -13566292 - Lx LINE L1 -1146 4737 400 8 1645 424 365 24 14 chr5 138970987 138971198 -13566061 - B3 SINE B2 0 216 4 8 1645 1036 108 0 26 chr5 138972755 138972907 -13564352 - B1_Mus1 SINE Alu 0 148 1 8 1645 22 0 0 0 chr5 138974608 138974630 -13562629 + AT_rich Low_complexity Low_complexity 1 22 0 8 1645 22 56 0 0 chr5 138974909 138974945 -13562314 + AT_rich Low_complexity Low_complexity 1 36 0 9 1645 6705 109 51 18 chr5 138975203 138976345 -13560914 - L1_Mus4 LINE L1 -9 6627 5456 9 1645 1740 290 47 58 chr5 138976467 138977229 -13560030 + Lx7 LINE L1 6559 7312 -384 9 1645 1167 75 0 0 chr5 138978449 138978596 -13558663 + B1_Mm SINE Alu 1 147 0 9 1645 225 0 0 0 chr5 138978596 138978621 -13558638 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 9 1645 367 130 0 0 chr5 138978724 138978778 -13558481 - RLTR13D5 LTR ERVK -969 54 1 9 1645 989 286 37 43 chr5 138978778 138979234 -13558025 + MYSERV6-int LTR ERVK 886 1287 -7672 9 1645 1130 164 89 47 chr5 138979239 138979475 -13557784 - RLTR11A LTR ERVK -281 247 2 9 1645 36 23 0 0 chr5 138979518 138979561 -13557698 + AT_rich Low_complexity Low_complexity 1 43 0 9 1645 6387 179 46 3 chr5 138979566 138980845 -13556414 + Lx4B LINE L1 5592 7052 -6 9 1645 26 30 0 0 chr5 138980846 138980879 -13556380 + AT_rich Low_complexity Low_complexity 1 33 0 9 1645 25553 102 7 63 chr5 138982007 138985241 -13552018 + L1_Mus1 LINE L1 1924 4931 -952 9 1645 1163 62 0 0 chr5 138985241 138985387 -13551872 - B1_Mm SINE Alu 0 147 2 9 1645 25553 74 9 25 chr5 138985387 138987137 -13550122 + L1_Mus1 LINE L1 4932 6567 0 9 1645 405 0 0 0 chr5 138987137 138987182 -13550077 + (GGGA)n Simple_repeat Simple_repeat 2 46 0 9 1645 923 97 0 14 chr5 138987182 138987328 -13549931 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 9 1645 1166 154 8 9 chr5 138987425 138987656 -13549603 + RLTR9A2 LTR ERVK 1 242 -126 9 1645 16064 21 3 0 chr5 138987656 138990186 -13547073 - L1Md_A LINE L1 0 6582 4041 9 1645 1629 16 0 0 chr5 138990184 138990374 -13546885 + L1Md_A LINE L1 3777 3966 -1917 9 1645 748 147 14 14 chr5 138990374 138990512 -13546747 + RLTR9A2 LTR ERVK 231 368 0 9 1645 195 42 0 0 chr5 138990834 138990858 -13546401 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 9 1645 1533 187 41 14 chr5 138990858 138991151 -13546108 - L1_Mm LINE L1 -125 5758 5458 9 1645 11838 172 25 3 chr5 138991142 138993455 -13543804 - L1_Mur1 LINE L1 -1374 4512 2149 9 1645 1187 49 7 0 chr5 138993476 138993620 -13543639 - B1_Mus2 SINE Alu -1 146 2 9 1645 288 172 99 31 chr5 138993620 138993782 -13543477 + (TTAA)n Simple_repeat Simple_repeat 1 173 0 9 1645 207 100 0 0 chr5 138993999 138994029 -13543230 + (TTA)n Simple_repeat Simple_repeat 2 31 0 9 1645 796 206 72 0 chr5 138994033 138994213 -13543046 + B3 SINE B2 5 197 -19 9 1645 725 228 14 0 chr5 138994563 138994708 -13542551 + B1_Mur1 SINE Alu 3 149 0 9 1645 1984 154 39 11 chr5 138995324 138995685 -13541574 - RLTR14 LTR ERV1 -9 373 3 9 1645 702 268 104 50 chr5 138995727 138996138 -13541121 + RLTR20D LTR ERVK 1 578 0 9 1645 46 0 0 0 chr5 138996549 138996595 -13540664 + AT_rich Low_complexity Low_complexity 1 46 0 9 1645 5681 25 14 0 chr5 138996595 138997261 -13539998 - L1Md_A LINE L1 0 6582 5908 9 1645 22 0 0 0 chr5 138997349 138997371 -13539888 + AT_rich Low_complexity Low_complexity 1 22 0 9 1645 564 205 94 0 chr5 138997548 138997675 -13539584 + B1_Mus1 SINE Alu 1 139 -9 9 1645 28 0 0 0 chr5 138997833 138997861 -13539398 + AT_rich Low_complexity Low_complexity 1 28 0 9 1645 1206 211 106 6 chr5 138997876 138998320 -13538939 + MT2A LTR ERVL 1 488 -45 9 1645 462 61 0 0 chr5 138998320 138998386 -13538873 + (TG)n Simple_repeat Simple_repeat 2 67 0 9 1645 1102 255 21 3 chr5 138998386 138998429 -13538830 + MT2A LTR ERVL 489 532 -1 9 1645 791 243 61 22 chr5 138998435 138998616 -13538643 - B3 SINE B2 -28 188 1 9 1645 1530 218 32 32 chr5 138998655 138999029 -13538230 + ORR1D1 LTR MaLR 1 374 0 9 1645 180 77 0 0 chr5 138999250 138999276 -13537983 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 9 1645 584 27 14 0 chr5 138999280 138999354 -13537905 + (TC)n Simple_repeat Simple_repeat 1 75 0 9 1645 366 23 0 0 chr5 138999488 138999531 -13537728 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1645 428 310 102 15 chr5 138999544 138999750 -13537509 - RMER15 LTR ERVL -107 468 245 9 1645 557 207 22 0 chr5 139000140 139000275 -13536984 - URR1B DNA MER1_type 0 225 88 1 1645 309 231 39 0 chr5 139000363 139000441 -13536818 + B1F1 SINE Alu 54 134 -15 2 1645 288 0 0 0 chr5 139000582 139000614 -13536645 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1645 1973 128 10 0 chr5 139000614 139000927 -13536332 + ORR1A2 LTR MaLR 5 320 -7 4 1645 230 225 0 12 chr5 139000930 139001011 -13536248 + (TG)n Simple_repeat Simple_repeat 2 81 0 5 1645 244 363 22 15 chr5 139001066 139001203 -13536056 - B4A SINE B4 -2 290 153 6 1645 1461 236 73 11 chr5 139001242 139001623 -13535636 - MTD LTR MaLR -14 405 1 7 1645 383 247 39 8 chr5 139001623 139001733 -13535526 - B4A SINE B4 -175 117 3 6 1645 227 212 157 57 chr5 139005087 139005157 -13532102 + MurSAT1 Satellite Satellite 3 79 -41 8 1645 235 276 0 0 chr5 139006405 139006463 -13530796 + (CA)n Simple_repeat Simple_repeat 1 58 0 9 1645 773 220 68 0 chr5 139007190 139007381 -13529878 - B3 SINE B2 -5 211 8 1 1645 1544 210 54 54 chr5 139008255 139008662 -13528597 + MTD LTR MaLR 1 407 -12 1 1645 5328 17 0 0 chr5 139008939 139009531 -13527728 - L1Md_T LINE L1 -1 6581 5990 1 1645 5504 9 0 0 chr5 139009531 139010252 -13527007 + L1Md_T LINE L1 5262 5982 -600 1 1645 860 211 58 5 chr5 139010474 139010679 -13526580 - B3 SINE B2 0 216 1 1 1645 1989 241 55 38 chr5 139010987 139011588 -13525671 - RMER19C LTR ERVK 0 611 1 1 1645 21 0 0 0 chr5 139011906 139011927 -13525332 + AT_rich Low_complexity Low_complexity 1 21 0 1 1645 270 0 0 0 chr5 139011929 139011959 -13525300 + (TC)n Simple_repeat Simple_repeat 2 31 0 1 1645 366 61 0 0 chr5 139011959 139012007 -13525252 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1645 23 114 0 0 chr5 139012207 139012321 -13524938 + AT_rich Low_complexity Low_complexity 1 114 0 1 1645 207 180 116 32 chr5 139012524 139012679 -13524580 + (TTAA)n Simple_repeat Simple_repeat 3 170 0 1 1645 248 232 78 18 chr5 139012729 139012896 -13524363 + (TTAA)n Simple_repeat Simple_repeat 3 179 0 1 1645 803 171 60 22 chr5 139012945 139013130 -13524129 + B3 SINE B2 6 197 -19 2 1645 867 171 7 0 chr5 139013481 139013627 -13523632 + B1_Mur1 SINE Alu 3 149 0 2 1645 216 0 0 0 chr5 139014455 139014479 -13522780 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1645 1743 158 61 12 chr5 139014479 139014824 -13522435 - RLTR14 LTR ERV1 -20 362 1 2 1645 586 257 84 40 chr5 139014889 139015140 -13522119 + RLTR20C LTR ERVK 51 312 -222 2 1645 486 206 109 64 chr5 139015132 139015288 -13521971 + RLTR20C LTR ERVK 416 578 0 2 1645 734 175 7 0 chr5 139015954 139016091 -13521168 + B1_Mus1 SINE Alu 11 148 0 2 1645 1089 197 148 14 chr5 139016301 139016727 -13520532 + MT2A LTR ERVL 1 487 -46 2 1645 486 0 0 0 chr5 139016727 139016781 -13520478 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1645 907 248 85 4 chr5 139016781 139016818 -13520441 + MT2A LTR ERVL 488 525 -8 2 1645 936 205 16 10 chr5 139016826 139017018 -13520241 - B3 SINE B2 -22 194 2 2 1645 1101 219 4 24 chr5 139017059 139017311 -13519948 + ORR1D1 LTR MaLR 1 247 -127 2 1645 3199 163 45 16 chr5 139017316 139017938 -13519321 + RLTR26 LTR ERVK 3 642 0 3 1645 12826 93 46 7 chr5 139017938 139019726 -13517533 + MERVK26-int LTR ERVK 1 1859 -5060 3 1645 435 271 36 67 chr5 139019744 139019938 -13517321 + RMER13B LTR ERVK 721 908 0 3 1645 874 189 23 0 chr5 139019963 139020138 -13517121 + RMER17A-int LTR ERVK 1355 1533 -195 3 1645 16889 86 14 9 chr5 139020150 139023026 -13514233 - L1VL4 LINE L1 -281 3278 393 3 1645 2270 120 30 70 chr5 139023029 139023393 -13513866 + MT2B LTR ERVL 180 551 -50 3 1645 2992 123 52 6 chr5 139023393 139023509 -13513750 + RLTR19C LTR ERVK 1 124 -382 3 1645 261 0 0 0 chr5 139023509 139023538 -13513721 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1645 2992 123 52 6 chr5 139023538 139023905 -13513354 + RLTR19C LTR ERVK 125 506 0 3 1645 2270 120 30 70 chr5 139023905 139023980 -13513279 + MT2B LTR ERVL 552 601 0 3 1645 747 302 53 8 chr5 139024006 139024253 -13513006 - Lx8 LINE L1 -822 6651 6394 3 1645 279 79 0 0 chr5 139024254 139024292 -13512967 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 3 1645 441 274 8 31 chr5 139024307 139024435 -13512824 - B3 SINE B2 -27 189 65 3 1645 499 281 104 67 chr5 139024501 139024798 -13512461 - Lx8 LINE L1 -1109 6364 6057 3 1645 1789 172 99 8 chr5 139024810 139024966 -13512293 + ORR1C2 LTR MaLR 1 177 -207 4 1645 781 49 13 47 chr5 139024966 139025116 -13512143 + (TTCTC)n Simple_repeat Simple_repeat 5 149 0 4 1645 1789 172 99 8 chr5 139025116 139025311 -13511948 + ORR1C2 LTR MaLR 178 383 -1 4 1645 1134 271 74 8 chr5 139025715 139026095 -13511164 + MTD LTR MaLR 1 405 -14 4 1645 720 164 0 8 chr5 139027071 139027200 -13510059 - URR1B DNA MER1_type 0 225 98 4 1645 2248 270 41 11 chr5 139027214 139027769 -13509490 - Lx9 LINE L1 -766 6878 6307 4 1645 4501 96 8 32 chr5 139027891 139028645 -13508614 + RMER17A LTR ERVK 1 736 -15 4 1645 301 161 0 18 chr5 139028763 139028820 -13508439 + RLTR5_Mm LTR ERV1 1 56 -598 4 1645 742 198 61 70 chr5 139028931 139029186 -13508073 + RLTR5_Mm LTR ERV1 288 628 0 4 1645 450 283 25 0 chr5 139029186 139029306 -13507953 - Lx9 LINE L1 -1673 5971 5849 4 1645 309 261 70 26 chr5 139029310 139029424 -13507835 - RLTR25B LTR ERVK -3 1025 907 4 1645 2392 103 8 5 chr5 139029447 139029826 -13507433 - RLTR44B LTR ERVK -37 412 33 4 1645 637 176 11 140 chr5 139029839 139030017 -13507242 - RLTR25B LTR ERVK -253 775 621 4 1645 388 236 12 6 chr5 139030144 139030173 -13507086 - ORR1A3-int LTR MaLR -1094 869 707 4 1645 471 213 38 83 chr5 139030173 139030306 -13506953 - MT2B LTR ERVL -332 269 143 5 1645 1121 154 53 5 chr5 139030306 139030515 -13506744 - RLTR25B LTR ERVK -531 572 354 4 1645 621 0 0 0 chr5 139030891 139030960 -13506299 + (TC)n Simple_repeat Simple_repeat 2 70 0 5 1645 1446 168 57 159 chr5 139030992 139031395 -13505864 - RLTR25B LTR ERVK -666 362 1 4 1645 921 259 35 38 chr5 139031451 139031740 -13505519 + Lx9 LINE L1 6935 7222 -422 5 1645 12641 161 65 31 chr5 139032112 139035122 -13502137 + Lx2B LINE L1 704 3820 -2066 5 1645 5808 134 7 1 chr5 139035119 139036066 -13501193 - L1VL4 LINE L1 -5470 832 1 5 1645 465 119 9 57 chr5 139036062 139036178 -13501081 + MusHAL1 LINE L1 952 1127 -1585 5 1645 17743 148 49 14 chr5 139036162 139039638 -13497621 + Lx2 LINE L1 2598 6189 -808 5 1645 6087 33 1 1 chr5 139039638 139040343 -13496916 + L1Md_F2 LINE L1 5873 6577 -5 5 1645 10582 153 86 10 chr5 139040346 139043290 -13493969 + Lx2B LINE L1 3798 6985 -15 5 1645 705 56 0 0 chr5 139043330 139043420 -13493839 + (GGGA)n Simple_repeat Simple_repeat 2 91 0 5 1645 1343 176 60 33 chr5 139043439 139043738 -13493521 + ORR1D1 LTR MaLR 5 311 -63 5 1645 1186 243 111 186 chr5 139043738 139044244 -13493015 + MT2B LTR ERVL 1 594 -7 6 1645 229 261 55 76 chr5 139044602 139044747 -13492512 + Lx9 LINE L1 7352 7493 -151 5 1645 22 35 0 0 chr5 139045837 139045866 -13491393 + AT_rich Low_complexity Low_complexity 1 29 0 6 1645 252 380 0 10 chr5 139046229 139046330 -13490929 + PB1D10 SINE Alu 5 104 -13 6 1645 527 290 28 0 chr5 139046475 139046620 -13490639 + RSINE1 SINE B4 5 153 -12 6 1645 328 314 48 0 chr5 139046947 139047071 -13490188 - B1F SINE Alu -2 147 18 6 1645 350 310 9 0 chr5 139046968 139047084 -13490175 - ID_B1 SINE B4 -22 202 86 6 1645 493 242 35 41 chr5 139047582 139048388 -13488871 - MMSAT4 Satellite Satellite -24 800 1 6 1645 206 244 0 75 chr5 139050128 139050301 -13486958 + (TTAA)n Simple_repeat Simple_repeat 4 163 0 6 1645 2213 103 16 0 chr5 139052602 139052922 -13484337 + ORR1A2 LTR MaLR 3 327 0 6 1645 297 167 0 0 chr5 139053277 139053325 -13483934 - MurSatRep1 Unknown Unknown -1409 728 681 6 1645 789 227 76 15 chr5 139053989 139054186 -13483073 + B3 SINE B2 3 211 -5 7 1645 341 187 80 0 chr5 139054819 139054894 -13482365 + ID4 SINE ID 3 83 0 7 1645 1166 284 44 8 chr5 139054926 139055292 -13481967 - MTD LTR MaLR -39 380 2 7 1645 196 224 0 45 chr5 139056656 139056834 -13480425 + (CAGA)n Simple_repeat Simple_repeat 2 171 0 7 1645 291 235 46 23 chr5 139056981 139057068 -13480191 + Lx8 LINE L1 7113 7201 -272 7 1645 35 0 0 0 chr5 139057177 139057212 -13480047 + AT_rich Low_complexity Low_complexity 1 35 0 7 1645 198 128 0 0 chr5 139058884 139058923 -13478336 + (A)n Simple_repeat Simple_repeat 1 39 0 7 1645 480 204 106 72 chr5 139059642 139059822 -13477437 + B3A SINE B2 2 187 -11 7 1645 787 178 43 111 chr5 139061728 139061936 -13475323 - ORR1C2 LTR MaLR -32 352 159 7 1645 1477 130 17 35 chr5 139061954 139062185 -13475074 - MERVL_2A-int LTR ERVL -4719 1042 816 7 1645 284 286 21 21 chr5 139062298 139062391 -13474868 + RLTR42-int LTR ERVK 1259 1351 -4171 8 1645 366 117 0 32 chr5 139062616 139062678 -13474581 - HAL1-3A_ME LINE L1 -824 2034 1975 8 1645 711 244 52 6 chr5 139062689 139062862 -13474397 - B3A SINE B2 -15 183 3 8 1645 368 304 14 43 chr5 139063352 139063493 -13473766 - B1_Mus1 SINE Alu -1 147 11 8 1645 213 286 0 73 chr5 139063436 139063504 -13473755 - B4A SINE B4 -146 146 84 8 1645 225 83 0 0 chr5 139064837 139064873 -13472386 + (TG)n Simple_repeat Simple_repeat 2 37 0 8 1645 636 184 0 49 chr5 139064897 139065040 -13472219 - B3 SINE B2 -79 137 2 8 1645 1374 156 112 0 chr5 139065976 139066252 -13471007 - ORR1B1 LTR MaLR -73 321 15 8 1645 353 330 42 42 chr5 139066283 139066499 -13470760 - L1M3de LINE L1 -6184 469 295 8 1645 233 254 0 31 chr5 139066710 139066775 -13470484 + (CATA)n Simple_repeat Simple_repeat 1 63 0 8 1646 324 0 0 0 chr5 139068215 139068251 -13469008 + (TTG)n Simple_repeat Simple_repeat 2 37 0 9 1646 372 312 62 49 chr5 139068302 139068464 -13468795 - RSINE1 SINE B4 0 165 2 9 1646 189 0 0 0 chr5 139068646 139068667 -13468592 + (TA)n Simple_repeat Simple_repeat 2 22 0 9 1646 247 248 165 0 chr5 139068921 139069030 -13468229 + RMER5 LTR ERV1 187 313 -221 9 1646 1246 220 67 56 chr5 139069038 139069380 -13467879 + ORR1E LTR MaLR 6 351 -8 9 1646 244 279 0 0 chr5 139069482 139069543 -13467716 + ID_B1 SINE B4 146 206 -18 9 1646 323 264 0 0 chr5 139069696 139069768 -13467491 - RMER10B LTR ERVL -57 341 270 9 1646 721 219 0 0 chr5 139070042 139070170 -13467089 + B1_Mur4 SINE Alu 22 149 -1 9 1646 562 281 142 72 chr5 139070172 139070716 -13466543 + L1MA4 LINE L1 5347 5928 -372 9 1646 2048 144 45 48 chr5 139070959 139071338 -13465921 - ORR1C1 LTR MaLR 0 378 1 9 1646 490 316 36 0 chr5 139071362 139071501 -13465758 - RSINE1 SINE B4 -19 146 3 1 1646 1624 128 27 63 chr5 139071894 139072228 -13465031 - RLTRETN_Mm LTR ERVK 0 322 1 1 1646 816 234 34 19 chr5 139072233 139072438 -13464821 + B3 SINE B2 2 209 -7 1 1646 228 317 36 12 chr5 139072464 139072547 -13464712 - B1F2 SINE Alu -35 114 30 1 1646 922 177 0 0 chr5 139072573 139072720 -13464539 + B1_Mus1 SINE Alu 2 148 0 1 1646 29 70 0 0 chr5 139073680 139073737 -13463522 + AT_rich Low_complexity Low_complexity 1 57 0 1 1646 227 307 0 13 chr5 139073929 139074005 -13463254 - RMER5 LTR ERV1 -16 518 444 1 1646 312 318 9 26 chr5 139074054 139074167 -13463092 - RMER5 LTR ERV1 -186 348 238 1 1646 705 144 0 0 chr5 139074616 139074734 -13462525 + (TA)n Simple_repeat Simple_repeat 1 118 0 1 1646 517 221 3 0 chr5 139074867 139074984 -13462275 - B3 SINE B2 -75 120 2 1 1646 599 378 67 22 chr5 139075152 139075723 -13461536 - L1M3de LINE L1 -5781 872 47 1 1646 24 0 0 0 chr5 139075834 139075858 -13461401 + AT_rich Low_complexity Low_complexity 1 24 0 1 1646 815 296 70 12 chr5 139076205 139076448 -13460811 - B4A SINE B4 -25 267 11 1 1646 2032 169 80 0 chr5 139076498 139076888 -13460371 - MTC LTR MaLR 0 421 1 1 1646 815 228 27 16 chr5 139076888 139077074 -13460185 - B3 SINE B2 -24 192 5 1 1646 387 228 10 10 chr5 139077405 139077507 -13459752 + MurSatRep1 Unknown Unknown 627 728 -1409 1 1646 247 257 73 5 chr5 139077699 139077805 -13459454 - L1MA8 LINE L1 -296 6004 5894 1 1646 247 308 34 34 chr5 139078257 139078405 -13458854 - L1MA8 LINE L1 -456 5835 5688 1 1646 946 189 201 63 chr5 139078413 139078796 -13458463 - RMER17B LTR ERVK -522 436 1 1 1646 936 182 14 79 chr5 139078981 139079196 -13458063 - ORR1D1 LTR MaLR -8 366 166 1 1646 441 0 0 0 chr5 139079302 139079351 -13457908 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1646 975 152 0 0 chr5 139079356 139079521 -13457738 - ORR1D1 LTR MaLR -209 165 1 1 1646 2341 89 9 50 chr5 139080025 139080366 -13456893 - ORR1A2 LTR MaLR 0 327 1 1 1646 203 230 40 26 chr5 139080374 139080450 -13456809 + T-rich Low_complexity Low_complexity 4 80 0 1 1646 1133 62 0 14 chr5 139080874 139080887 -13456372 - B1_Mus2 SINE Alu 0 147 136 1 1646 432 0 0 0 chr5 139080887 139080935 -13456324 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1 1646 1133 62 0 14 chr5 139080935 139081069 -13456190 - B1_Mus2 SINE Alu -12 135 2 1 1646 380 247 0 13 chr5 139081181 139081211 -13456048 - ID4 SINE ID -49 103 1 1 1646 401 213 0 0 chr5 139081211 139081286 -13455973 - ID SINE ID -149 75 1 1 1646 219 103 0 0 chr5 139081513 139081552 -13455707 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 1 1646 1447 208 12 3 chr5 139081698 139082017 -13455242 + MTD LTR MaLR 86 407 -12 1 1646 193 29 59 0 chr5 139083386 139083420 -13453839 + (TTATA)n Simple_repeat Simple_repeat 5 40 0 1 1646 31 26 0 0 chr5 139083427 139083465 -13453794 + AT_rich Low_complexity Low_complexity 1 38 0 1 1646 770 153 14 7 chr5 139083544 139083689 -13453570 - B1_Mur2 SINE Alu -2 147 2 1 1646 333 284 163 0 chr5 139083910 139084051 -13453208 - L1M3 LINE L1 -2358 3788 3621 1 1646 2506 90 46 25 chr5 139084058 139084490 -13452769 - BGLII_B LTR ERVK 0 441 1 1 1646 362 272 65 14 chr5 139084492 139084630 -13452629 - L1M3 LINE L1 -2523 3617 3473 1 1646 2004 264 50 2 chr5 139084658 139085162 -13452097 - Lx8 LINE L1 -755 6718 6191 1 1646 444 126 0 0 chr5 139085162 139085249 -13452010 + (TC)n Simple_repeat Simple_repeat 1 87 0 1 1646 288 0 0 0 chr5 139085249 139085281 -13451978 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1646 1127 293 73 36 chr5 139085500 139086160 -13451099 - L1_Mur3 LINE L1 -4029 1851 1150 1 1646 270 0 0 0 chr5 139086330 139086360 -13450899 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1 1646 232 146 0 68 chr5 139087056 139087100 -13450159 - L1ME1 LINE L1 -88 6091 6051 1 1646 347 275 32 32 chr5 139088356 139088557 -13448702 + MMSAT4 Satellite Satellite 1 201 -7 1 1646 335 270 38 38 chr5 139088671 139088802 -13448457 + MMSAT4 Satellite Satellite 31 161 -7 1 1646 289 231 12 49 chr5 139089712 139089794 -13447465 - PB1D7 SINE Alu 0 120 42 1 1646 290 167 0 0 chr5 139089822 139089882 -13447377 + CT-rich Low_complexity Low_complexity 121 180 0 1 1646 292 169 0 92 chr5 139089882 139089947 -13447312 - PB1D9 SINE Alu -61 59 1 1 1646 2098 125 169 0 chr5 139090579 139090916 -13446343 - ORR1B1 LTR MaLR 0 394 1 1 1646 719 110 76 0 chr5 139090940 139091013 -13446246 + ORR1B1 LTR MaLR 254 335 -59 1 1646 234 0 0 0 chr5 139091013 139091039 -13446220 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1646 719 110 76 0 chr5 139091039 139091083 -13446176 + ORR1B1 LTR MaLR 336 379 -15 1 1646 355 193 169 0 chr5 139091083 139091166 -13446093 - B4A SINE B4 -194 98 2 1 1646 276 328 39 31 chr5 139091189 139091318 -13445941 - B1F SINE Alu 0 149 20 1 1646 733 176 34 34 chr5 139091468 139091615 -13445644 - B1_Mur4 SINE Alu -3 147 1 1 1646 450 0 0 0 chr5 139091718 139091768 -13445491 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1646 519 17 0 0 chr5 139092014 139092074 -13445185 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1 1646 820 241 145 8 chr5 139092114 139092348 -13444911 + MTE2b LTR MaLR 104 369 -10 1 1646 3362 159 97 19 chr5 139092714 139093356 -13443903 - RLTR17 LTR ERVK 0 692 1 1 1646 246 156 0 0 chr5 139093689 139093734 -13443525 + GA-rich Low_complexity Low_complexity 3 47 0 1 1646 649 185 34 0 chr5 139093753 139093872 -13443387 + B1_Mus2 SINE Alu 9 131 -16 1 1646 576 0 0 0 chr5 139093873 139093937 -13443322 + (TAAA)n Simple_repeat Simple_repeat 4 67 0 1 1646 647 25 12 0 chr5 139093965 139094046 -13443213 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 1 1646 1329 258 27 40 chr5 139094085 139094460 -13442799 + MTE2a LTR MaLR 10 379 0 1 1646 222 118 0 0 chr5 139095115 139095149 -13442110 + (T)n Simple_repeat Simple_repeat 1 34 0 1 1646 29 0 0 0 chr5 139095443 139095472 -13441787 + AT_rich Low_complexity Low_complexity 1 29 0 1 1646 739 236 57 0 chr5 139095712 139095869 -13441390 - B3 SINE B2 -49 167 2 1 1646 496 296 112 0 chr5 139095972 139096097 -13441162 + RSINE1 SINE B4 2 140 -25 1 1646 4272 146 66 8 chr5 139096242 139096968 -13440291 - Lx4A LINE L1 -1 7057 6290 1 1646 4345 117 53 4 chr5 139096968 139097980 -13439279 + Lx4B LINE L1 5197 6278 -780 1 1646 648 269 52 6 chr5 139098306 139098478 -13438781 + B3A SINE B2 1 180 -18 1 1646 1062 97 0 0 chr5 139098495 139098670 -13438589 + (TG)n Simple_repeat Simple_repeat 1 175 0 1 1646 847 149 206 6 chr5 139100657 139100832 -13436427 + B3 SINE B2 1 210 -6 1 1646 207 100 0 0 chr5 139100849 139100879 -13436380 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 1 1646 363 23 0 0 chr5 139159778 139159822 -13377437 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1646 435 149 0 0 chr5 139159822 139159896 -13377363 + (TG)n Simple_repeat Simple_repeat 2 75 0 1 1646 877 299 52 24 chr5 139159897 139160147 -13377112 + B4A SINE B4 26 282 -10 1 1646 378 108 0 0 chr5 139160159 139160224 -13377035 + (CAGA)n Simple_repeat Simple_repeat 4 68 0 1 1646 313 243 54 0 chr5 139162120 139162194 -13375065 - LTR52-int LTR ERVL -3243 313 236 1 1646 730 168 0 40 chr5 139162215 139162339 -13374920 - PB1D9 SINE Alu -1 119 1 1 1646 369 0 0 0 chr5 139162372 139162413 -13374846 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1646 1096 261 45 15 chr5 139162477 139162742 -13374517 - B4A SINE B4 -18 274 2 1 1646 864 287 68 8 chr5 139163192 139163441 -13373818 + B4 SINE B4 4 267 -25 1 1646 324 0 0 0 chr5 139163443 139163479 -13373780 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1646 1203 68 0 0 chr5 139164208 139164430 -13372829 + (CA)n Simple_repeat Simple_repeat 1 222 0 1 1646 575 157 9 0 chr5 139164872 139164980 -13372279 + CT-rich Low_complexity Low_complexity 1 109 0 1 1646 587 210 121 0 chr5 139165009 139165133 -13372126 + MTEb LTR MaLR 3 141 -238 1 1646 871 295 22 76 chr5 139165133 139165449 -13371810 + MTD LTR MaLR 1 299 -120 1 1646 624 236 25 25 chr5 139165460 139165621 -13371638 + MTD LTR MaLR 259 419 0 1 1646 647 199 223 11 chr5 139165622 139165810 -13371449 + MTEb LTR MaLR 151 378 -1 1 1646 324 0 0 0 chr5 139166124 139166160 -13371099 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1646 432 0 0 0 chr5 139166160 139166207 -13371052 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1646 516 290 43 21 chr5 139166318 139166459 -13370800 - ID_B1 SINE B4 -2 222 79 1 1646 492 169 2 12 chr5 139166540 139166632 -13370627 - MTC LTR MaLR -14 407 280 1 1646 566 272 53 41 chr5 139166645 139166814 -13370445 - B4A SINE B4 -120 172 2 1 1646 307 241 36 0 chr5 139166823 139166906 -13370353 + CT-rich Low_complexity Low_complexity 1 86 0 1 1646 268 232 63 0 chr5 139167277 139167372 -13369887 - L1MC4 LINE L1 -1041 7001 6901 1 1646 649 315 78 14 chr5 139167475 139167694 -13369565 - B4A SINE B4 -58 234 2 1 1646 753 175 209 0 chr5 139168056 139168224 -13369035 + ID_B1 SINE B4 2 205 -19 1 1646 504 0 0 0 chr5 139168224 139168280 -13368979 + (CAAAA)n Simple_repeat Simple_repeat 1 56 0 1 1646 591 135 0 0 chr5 139168309 139168405 -13368854 + (TTTC)n Simple_repeat Simple_repeat 1 96 0 1 1646 222 37 0 0 chr5 139168408 139168435 -13368824 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1 1646 1099 110 0 0 chr5 139168483 139168629 -13368630 - B1_Mus2 SINE Alu 0 147 2 1 1646 378 0 0 0 chr5 139168924 139168966 -13368293 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1646 1120 109 44 98 chr5 139169027 139169231 -13368028 - ORR1A3 LTR MaLR -133 193 1 1 1646 377 228 83 65 chr5 139169231 139169319 -13367940 - ID_B1 SINE B4 -56 168 79 1 1646 2436 126 15 26 chr5 139169319 139169709 -13367550 + ORR1B1 LTR MaLR 1 386 -8 1 1646 247 223 104 26 chr5 139170905 139171020 -13366239 + MLT1A LTR MaLR 49 172 -202 1 1646 837 245 68 5 chr5 139171203 139171408 -13365851 - ID_B1 SINE B4 -4 220 3 2 1646 529 276 36 21 chr5 139171738 139171898 -13365361 - MTE2b LTR MaLR -213 166 10 2 1646 318 50 0 0 chr5 139171917 139171957 -13365302 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 1646 1266 192 104 109 chr5 139171965 139172388 -13364871 - MT2A LTR ERVL -54 547 6 2 1646 378 239 45 0 chr5 139172602 139172690 -13364569 + PB1D10 SINE Alu 22 113 -4 2 1646 984 256 61 48 chr5 139173705 139173855 -13363404 - RMER17C LTR ERVK 0 410 214 2 1646 483 48 0 0 chr5 139173855 139173917 -13363342 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1646 984 132 177 5 chr5 139173917 139174092 -13363167 - RMER17C LTR ERVK -197 213 4 2 1646 2462 188 111 59 chr5 139174764 139174948 -13362311 - Lx7 LINE L1 0 7696 7509 2 1646 2805 44 11 20 chr5 139174948 139175297 -13361962 - ORR1A1 LTR MaLR 0 346 1 2 1646 2462 188 111 59 chr5 139175297 139175448 -13361811 - Lx7 LINE L1 -188 7508 7361 2 1646 354 45 0 0 chr5 139175448 139175492 -13361767 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2 1646 1015 127 74 42 chr5 139175493 139175682 -13361577 + B2_Mm2 SINE B2 1 195 0 2 1646 2462 188 111 59 chr5 139175682 139176008 -13361251 - Lx7 LINE L1 -336 7360 6997 2 1646 2005 156 6 14 chr5 139176004 139176368 -13360891 - L1_Mur3 LINE L1 -1491 4389 4029 2 1646 1317 183 5 0 chr5 139177002 139177226 -13360033 + URR1B DNA MER1_type 1 225 0 2 1646 1236 295 29 24 chr5 139177789 139178171 -13359088 - RMER5 LTR ERV1 -24 510 127 2 1646 1704 145 112 3 chr5 139178215 139178526 -13358733 - IAPLTR4 LTR ERVK 0 345 1 2 1646 395 259 8 101 chr5 139178594 139178615 -13358644 + MT2B LTR ERVL 147 155 -446 2 1646 820 181 20 20 chr5 139178615 139178762 -13358497 + B1_Mur3 SINE Alu 3 149 0 2 1646 507 284 105 38 chr5 139178759 139179026 -13358233 + RMER5 LTR ERV1 195 479 -55 2 1646 336 230 157 20 chr5 139179481 139179583 -13357676 - PB1D10 SINE Alu -1 116 1 2 1646 336 274 0 0 chr5 139179516 139179589 -13357670 - ID_B1 SINE B4 -75 149 77 2 1646 620 233 20 84 chr5 139181029 139181200 -13356059 + RSINE1 SINE B4 2 162 -3 2 1646 233 321 42 125 chr5 139181200 139181220 -13356039 + B2_Mm2 SINE B2 7 181 -14 2 1646 1834 172 50 28 chr5 139181797 139182156 -13355103 - ORR1D1 LTR MaLR 0 374 8 2 1646 665 214 7 30 chr5 139182157 139182292 -13354967 - B1_Mur2 SINE Alu -16 133 2 2 1646 1723 203 103 41 chr5 139183367 139183804 -13353455 + RMER15 LTR ERVL 22 485 -90 2 1646 2310 152 23 8 chr5 139183805 139184190 -13353069 + ORR1B1 LTR MaLR 1 391 -3 2 1646 271 219 149 58 chr5 139184190 139184273 -13352986 + RMER15 LTR ERVL 483 573 -2 2 1646 343 324 76 76 chr5 139184759 139184848 -13352411 + MER63D DNA AcHobo 356 441 -620 2 1646 1752 128 74 64 chr5 139184848 139185174 -13352085 - ORR1A4 LTR MaLR 0 329 1 2 1646 343 324 76 76 chr5 139185174 139185268 -13351991 + MER63D DNA AcHobo 442 539 -522 2 1646 775 294 57 61 chr5 139185285 139185564 -13351695 + B4 SINE B4 15 292 0 2 1646 472 249 122 80 chr5 139185585 139185773 -13351486 - B3A SINE B2 -2 196 1 2 1646 28 29 0 0 chr5 139185776 139185811 -13351448 + AT_rich Low_complexity Low_complexity 1 35 0 2 1646 590 221 32 37 chr5 139186017 139186162 -13351097 - ID_B1 SINE B4 -44 248 110 2 1646 1333 278 59 0 chr5 139186458 139186814 -13350445 + MTEa LTR MaLR 3 379 0 2 1646 773 233 96 25 chr5 139186919 139187117 -13350142 + B3 SINE B2 2 213 -3 2 1646 332 278 231 0 chr5 139187138 139187246 -13350013 + B1F2 SINE Alu 5 137 -12 2 1646 376 294 37 67 chr5 139187280 139187333 -13349926 + B1F1 SINE Alu 10 140 -9 2 1646 490 207 0 0 chr5 139187333 139187415 -13349844 + ID_B1 SINE B4 134 215 -9 2 1646 1343 25 6 0 chr5 139187415 139187578 -13349681 + (GGAAA)n Simple_repeat Simple_repeat 3 166 0 2 1646 348 171 0 0 chr5 139187921 139188003 -13349256 + T-rich Low_complexity Low_complexity 1 82 0 2 1646 1284 34 0 0 chr5 139188004 139188151 -13349108 - B1_Mus2 SINE Alu 0 147 1 2 1646 1720 172 77 33 chr5 139188163 139188529 -13348730 - ORR1C2 LTR MaLR -2 382 1 2 1646 1597 231 38 19 chr5 139188529 139188884 -13348375 - MTEa LTR MaLR -12 367 3 2 1646 494 250 18 0 chr5 139188993 139189105 -13348154 + RCHARR1 DNA MER1_type 6 119 -855 2 1646 298 307 53 112 chr5 139189076 139189114 -13348145 + MT2B LTR ERVL 120 155 -446 2 1646 957 192 114 0 chr5 139189114 139189307 -13347952 + B3 SINE B2 2 216 0 2 1646 298 307 53 112 chr5 139189307 139189437 -13347822 + MT2B LTR ERVL 156 278 -323 2 1646 806 203 7 7 chr5 139189315 139189464 -13347795 + B1_Mur2 SINE Alu 1 149 0 2 1646 907 236 42 5 chr5 139189519 139189732 -13347527 + ID_B1 SINE B4 1 221 -3 2 1646 1067 236 4 40 chr5 139189787 139190038 -13347221 + RCHARR1 DNA MER1_type 228 469 -505 2 1646 352 230 0 129 chr5 139190035 139190205 -13347054 + RCHARR1 DNA MER1_type 748 895 -79 2 1646 206 105 26 0 chr5 139190205 139190243 -13347016 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 1646 351 206 50 101 chr5 139190246 139190299 -13346960 + RMER15 LTR ERVL 19 67 -508 2 1646 1084 122 0 0 chr5 139190299 139190446 -13346813 + B1_Mus1 SINE Alu 1 147 -1 2 1646 351 206 50 101 chr5 139190446 139190511 -13346748 + RMER15 LTR ERVL 68 131 -444 2 1646 1024 240 72 8 chr5 139190541 139190805 -13346454 + RMER15 LTR ERVL 295 575 0 2 1646 403 325 67 67 chr5 139190840 139191064 -13346195 + B4A SINE B4 5 228 -64 2 1646 184 170 0 36 chr5 139191095 139191150 -13346109 + (CA)n Simple_repeat Simple_repeat 1 53 0 2 1646 249 33 0 0 chr5 139191389 139191419 -13345840 + (A)n Simple_repeat Simple_repeat 1 30 0 2 1646 385 232 97 9 chr5 139191987 139192100 -13345159 + B1F SINE Alu 25 147 -2 2 1646 1601 79 1 0 chr5 139192105 139192463 -13344796 + ZP3AR Satellite Satellite 1 358 -1 2 1646 3009 268 130 71 chr5 139192466 139193855 -13343404 - ORR1B1-int LTR MaLR -39 1470 1 2 1646 1024 197 224 26 chr5 139193901 139194213 -13343046 + ORR1D1 LTR MaLR 1 374 0 2 1646 1126 188 69 0 chr5 139194318 139194520 -13342739 - B3 SINE B2 0 216 1 2 1646 538 97 0 41 chr5 139194541 139194638 -13342621 + (TCTCCC)n Simple_repeat Simple_repeat 4 96 0 2 1646 748 247 7 7 chr5 139194644 139194799 -13342460 - ID_B1 SINE B4 -16 208 54 2 1646 904 254 86 34 chr5 139194799 139195068 -13342191 - B4 SINE B4 -9 283 1 2 1646 359 270 71 18 chr5 139195068 139195093 -13342166 - B4A SINE B4 -239 53 27 2 1646 3077 66 18 13 chr5 139195348 139195746 -13341513 + MTB LTR MaLR 1 400 0 2 1646 564 286 0 8 chr5 139197103 139197237 -13340022 + ID_B1 SINE B4 80 212 -12 2 1646 883 264 68 0 chr5 139197521 139197786 -13339473 - B4 SINE B4 -9 283 1 2 1646 2904 100 20 0 chr5 139197869 139198268 -13338991 - MTB_Mm LTR MaLR 0 407 1 2 205 448 81 48 0 chr5 139198445 139198507 -13338752 - MTB_Mm LTR MaLR 0 407 343 2 1647 321 68 0 0 chr5 139198669 139198713 -13338546 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1647 1023 150 0 9 chr5 139198789 139199017 -13338242 + CT-rich Low_complexity Low_complexity 1 225 0 2 1647 602 269 200 18 chr5 139199035 139199205 -13338054 - B4 SINE B4 -90 202 2 2 1647 415 260 46 37 chr5 139199205 139199313 -13337946 - ID_B1 SINE B4 -1 223 115 2 1647 2322 132 82 3 chr5 139199807 139200172 -13337087 - ORR1B1 LTR MaLR 0 394 1 2 1647 348 24 0 0 chr5 139202533 139202574 -13334685 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1647 245 214 0 0 chr5 139202964 139203006 -13334253 - ORR1B2 LTR MaLR 0 378 337 2 1647 24 0 0 0 chr5 139203019 139203043 -13334216 + AT_rich Low_complexity Low_complexity 1 24 0 2 1647 1678 148 51 119 chr5 139203270 139203428 -13333831 - ORR1B2 LTR MaLR -39 328 171 2 1647 486 0 0 0 chr5 139203428 139203482 -13333777 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1647 1678 148 51 119 chr5 139203482 139203675 -13333584 - ORR1B2 LTR MaLR -197 170 3 2 1647 783 319 9 0 chr5 139204438 139204629 -13332630 + B4A SINE B4 2 194 -98 2 1647 1328 199 44 25 chr5 139204629 139204949 -13332310 + RLTR15 LTR ERVK 1 326 -33 2 1647 424 337 6 12 chr5 139205040 139205205 -13332054 + (CATA)n Simple_repeat Simple_repeat 3 166 0 2 1647 285 327 67 0 chr5 139205290 139205394 -13331865 - RMER15 LTR ERVL -72 503 393 2 1647 1667 178 101 13 chr5 139205396 139205574 -13331685 - ORR1D1 LTR MaLR 0 374 198 2 1647 753 12 0 0 chr5 139205574 139205660 -13331599 + (GA)n Simple_repeat Simple_repeat 1 86 0 2 1647 1667 178 101 13 chr5 139205660 139205799 -13331460 - ORR1D1 LTR MaLR -177 197 29 2 1647 2313 75 39 0 chr5 139205805 139206112 -13331147 + ORR1A2 LTR MaLR 1 319 -8 2 1647 203 167 0 0 chr5 139206970 139207006 -13330253 + L3b LINE CR1 197 232 -250 2 1647 669 268 106 18 chr5 139207562 139207779 -13329480 - RMER15 LTR ERVL -4 571 336 2 1647 1040 108 49 142 chr5 139207884 139208110 -13329149 + RMER6B LTR ERVK 1 205 -256 2 1647 631 163 148 0 chr5 139208128 139208263 -13328996 + RMER6B LTR ERVK 297 451 -10 2 1647 189 0 0 0 chr5 139208268 139208289 -13328970 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1647 420 304 92 117 chr5 139208784 139209067 -13328192 + MTEa LTR MaLR 1 276 -103 2 1647 858 284 13 33 chr5 139209108 139209369 -13327890 + MT2A LTR ERVL 247 597 -4 2 1647 342 169 0 0 chr5 139209993 139210058 -13327201 + (TG)n Simple_repeat Simple_repeat 1 65 0 2 1647 250 221 29 0 chr5 139210705 139210773 -13326486 + T-rich Low_complexity Low_complexity 3 72 0 2 1647 684 280 14 23 chr5 139210775 139210991 -13326268 - ID_B1 SINE B4 -6 218 5 2 1647 450 234 21 21 chr5 139211127 139211223 -13326036 - PB1D10 SINE Alu -21 96 1 2 1647 300 278 0 67 chr5 139211140 139211244 -13326015 - MT2B2 LTR ERVL -343 241 145 2 1647 682 285 93 0 chr5 139213420 139213613 -13323646 + ID_B1 SINE B4 1 211 -13 2 1647 1294 175 45 46 chr5 139213629 139213890 -13323369 + MTD LTR MaLR 157 407 -12 2 1647 797 299 75 4 chr5 139213975 139214227 -13323032 + B4A SINE B4 10 279 -13 2 1647 916 82 47 0 chr5 139214235 139214405 -13322854 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1647 332 198 173 0 chr5 139214576 139214657 -13322602 - PB1 SINE Alu -14 113 19 2 1647 694 281 6 29 chr5 139214585 139214757 -13322502 - ID_B1 SINE B4 -53 171 4 2 1647 575 167 0 9 chr5 139214951 139215066 -13322193 + CT-rich Low_complexity Low_complexity 3 116 0 3 1647 283 100 33 16 chr5 139215366 139215427 -13321832 + (CAGA)n Simple_repeat Simple_repeat 3 64 0 3 1647 1723 205 35 8 chr5 139215618 139215987 -13321272 - MTEb LTR MaLR 0 379 1 3 1647 1145 230 172 11 chr5 139216047 139216395 -13320864 - MTD LTR MaLR -13 406 3 3 1647 2109 47 4 0 chr5 139216847 139217147 -13320112 + L1_Mus1 LINE L1 6313 6567 0 3 1647 963 263 24 0 chr5 139217381 139217590 -13319669 - B3 SINE B2 0 216 3 3 1647 594 291 101 0 chr5 139217602 139217801 -13319458 - ID_B1 SINE B4 -5 219 1 3 1647 6910 59 15 14 chr5 139220054 139220993 -13316266 - L1Md_F2 LINE L1 -1 6581 5642 3 1647 416 303 68 0 chr5 139222572 139222704 -13314555 + B4 SINE B4 81 221 -71 3 1647 287 49 24 0 chr5 139222782 139222823 -13314436 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1647 410 269 0 0 chr5 139224129 139224222 -13313037 + B1F SINE Alu 2 94 -55 3 1647 462 300 17 0 chr5 139224661 139224781 -13312478 - ID_B1 SINE B4 -21 203 82 3 1647 22 35 0 0 chr5 139224790 139224819 -13312440 + AT_rich Low_complexity Low_complexity 1 29 0 3 1647 386 292 151 14 chr5 139224846 139224985 -13312274 - RSINE1 SINE B4 -6 159 2 3 1647 403 377 40 13 chr5 139225081 139225402 -13311857 - L1M4 LINE L1 -2979 3167 2838 3 1647 227 195 95 83 chr5 139225860 139225944 -13311315 - PB1D7 SINE Alu -4 116 32 3 1647 932 131 23 0 chr5 139227643 139227818 -13309441 + CT-rich Low_complexity Low_complexity 1 179 0 3 1647 347 307 0 48 chr5 139228892 139229080 -13308179 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1647 22 35 0 0 chr5 139230923 139230952 -13306307 + GC_rich Low_complexity Low_complexity 1 29 0 3 1647 21 0 0 0 chr5 139231012 139231033 -13306226 + GC_rich Low_complexity Low_complexity 1 21 0 3 1647 34 0 0 0 chr5 139234802 139234836 -13302423 + AT_rich Low_complexity Low_complexity 1 34 0 3 1647 368 268 26 9 chr5 139235079 139235192 -13302067 + PB1D10 SINE Alu 1 115 -2 3 1647 1008 137 6 0 chr5 139235224 139235385 -13301874 + ZP3AR Satellite Satellite 27 188 -24 3 1647 181 250 82 16 chr5 139236859 139236920 -13300339 - MIR3 SINE MIR -54 154 90 3 1647 201 94 0 0 chr5 139237059 139237091 -13300168 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 1647 954 256 37 26 chr5 139237122 139237395 -13299864 - B4A SINE B4 -16 276 1 3 1647 424 251 47 5 chr5 139239131 139239298 -13297961 - ID_B1 SINE B4 -5 219 1 3 1647 838 240 120 0 chr5 139239899 139240099 -13297160 + ID_B1 SINE B4 1 224 0 3 1647 417 261 16 25 chr5 139241015 139241137 -13296122 - RMER15 LTR ERVL -155 420 300 3 1647 380 225 35 127 chr5 139241158 139241292 -13295967 - RMER15 LTR ERVL -416 159 40 3 1647 228 35 0 0 chr5 139241292 139241321 -13295938 + (TTGG)n Simple_repeat Simple_repeat 3 31 0 3 1647 949 151 0 40 chr5 139241322 139241474 -13295785 - B1_Mur2 SINE Alu -1 148 3 3 1647 380 225 35 127 chr5 139241474 139241510 -13295749 - RMER15 LTR ERVL -536 39 3 3 1647 759 226 0 0 chr5 139241687 139241824 -13295435 - B1_Mur1 SINE Alu -2 147 11 3 1647 1193 68 0 0 chr5 139241826 139241972 -13295287 + B1_Mus2 SINE Alu 2 147 0 3 1647 252 0 0 0 chr5 139241972 139242000 -13295259 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1647 204 163 0 0 chr5 139242066 139242109 -13295150 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1647 381 43 0 0 chr5 139242243 139242290 -13294969 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 1647 756 227 177 0 chr5 139243092 139243290 -13293969 + B4A SINE B4 1 233 -59 3 1647 262 86 34 17 chr5 139243458 139243517 -13293742 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 3 1647 1242 48 0 0 chr5 139243518 139243665 -13293594 - B1_Mm SINE Alu 0 147 1 3 1647 22 0 0 0 chr5 139243929 139243951 -13293308 + AT_rich Low_complexity Low_complexity 1 22 0 3 1647 444 227 18 19 chr5 139244476 139244599 -13292660 - PB1D7 SINE Alu -19 130 9 3 1647 257 261 0 30 chr5 139244608 139244675 -13292584 + CT-rich Low_complexity Low_complexity 2 66 0 3 1647 902 255 9 23 chr5 139244675 139244896 -13292363 - ID_B1 SINE B4 -6 218 1 3 1647 627 284 34 7 chr5 139246019 139246231 -13291028 + B4A SINE B4 1 216 -76 3 1647 405 260 0 10 chr5 139246231 139246328 -13290931 + B1F SINE Alu 4 99 -50 3 1647 327 157 0 53 chr5 139246335 139246449 -13290810 + GA-rich Low_complexity Low_complexity 1 108 0 3 1647 1258 149 51 9 chr5 139246511 139246727 -13290532 - URR1B DNA MER1_type 0 225 1 3 1647 867 295 75 12 chr5 139246829 139247162 -13290097 - L1MB7 LINE L1 -85 6099 5746 3 1647 863 160 138 10 chr5 139247513 139247709 -13289550 + URR1A DNA MER1_type 6 226 0 3 1647 1109 280 18 11 chr5 139247923 139248201 -13289058 - B4 SINE B4 -4 288 9 3 1647 521 99 12 0 chr5 139248415 139248496 -13288763 + (TG)n Simple_repeat Simple_repeat 2 83 0 3 1647 21 36 0 0 chr5 139248651 139248679 -13288580 + AT_rich Low_complexity Low_complexity 1 28 0 3 1647 1408 215 96 35 chr5 139249953 139250329 -13286930 - MTD LTR MaLR -16 403 5 3 1647 509 259 0 41 chr5 139251036 139251157 -13286102 - B1F1 SINE Alu -31 118 3 3 1647 192 340 53 0 chr5 139251519 139251613 -13285646 - L2 LINE L2 -1886 1533 1435 3 1647 695 216 98 0 chr5 139251710 139251863 -13285396 + B3 SINE B2 2 169 -47 3 1647 1094 204 13 47 chr5 139253051 139253283 -13283976 - URR1A DNA MER1_type -2 224 1 3 1647 410 254 0 83 chr5 139253997 139254190 -13283069 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 3 1647 405 302 85 33 chr5 139255344 139255488 -13281771 - ID_B1 SINE B4 0 224 77 3 1647 307 0 23 23 chr5 139255488 139255532 -13281727 + (TTGG)n Simple_repeat Simple_repeat 2 45 0 3 1647 405 302 85 33 chr5 139255532 139255599 -13281660 - ID SINE ID -148 76 2 3 1647 341 315 62 47 chr5 139256763 139256956 -13280303 - B4A SINE B4 -92 200 5 3 1647 405 0 0 0 chr5 139256970 139257015 -13280244 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1647 417 219 0 0 chr5 139257016 139257098 -13280161 - B4A SINE B4 -22 270 189 3 1647 465 265 0 49 chr5 139257542 139257665 -13279594 + PB1D10 SINE Alu 1 117 0 3 1647 1549 38 2 4 chr5 139257669 139257986 -13279273 + ZP3AR Satellite Satellite 1 316 -1 3 1647 389 212 38 0 chr5 139257987 139258067 -13279192 + ID4_ SINE ID 1 83 0 3 1647 365 206 14 14 chr5 139259562 139259636 -13277623 - B4 SINE B4 -67 225 152 3 1647 244 337 37 69 chr5 139259719 139259907 -13277352 + MLT1D LTR MaLR 70 251 -254 3 1647 214 344 94 41 chr5 139260075 139260245 -13277014 + MIRb SINE MIR 68 246 -22 3 1647 205 300 86 12 chr5 139260518 139260599 -13276660 + MIRc SINE MIR 74 160 -108 3 1647 407 237 104 7 chr5 139261876 139261997 -13275262 - B1F2 SINE Alu -21 126 1 3 1647 280 43 43 0 chr5 139263270 139263316 -13273943 + (TTTTG)n Simple_repeat Simple_repeat 1 48 0 3 1647 457 227 92 15 chr5 139263317 139263447 -13273812 - B1F SINE Alu -1 148 9 3 1647 315 229 0 0 chr5 139263647 139263708 -13273551 + ID SINE ID 2 62 -162 3 1647 218 296 70 0 chr5 139264090 139264161 -13273098 - MER5A DNA MER1_type -30 159 84 3 1647 211 272 101 55 chr5 139264091 139264200 -13273059 + MER5A DNA MER1_type 43 156 -33 3 1647 279 79 0 0 chr5 139264785 139264823 -13272436 + (GGGA)n Simple_repeat Simple_repeat 2 39 0 3 1647 180 111 0 0 chr5 139265278 139265305 -13271954 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 3 1647 875 215 161 10 chr5 139265313 139265506 -13271753 - ID_B1 SINE B4 -2 222 1 3 1647 360 119 0 0 chr5 139265765 139265824 -13271435 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 1647 235 185 93 0 chr5 139265959 139266013 -13271246 + B4 SINE B4 1 59 -233 3 1647 500 292 9 0 chr5 139266103 139266245 -13271014 + B4 SINE B4 90 233 -59 3 1647 428 286 33 67 chr5 139266250 139266400 -13270859 + B4 SINE B4 79 223 -69 3 1647 733 193 30 0 chr5 139266266 139266401 -13270858 + B1_Mur2 SINE Alu 10 148 -1 3 1647 324 175 0 0 chr5 139266570 139266633 -13270626 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1647 467 33 16 0 chr5 139267285 139267346 -13269913 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 1647 450 0 0 0 chr5 139268277 139268327 -13268932 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 1647 581 276 158 54 chr5 139268363 139268437 -13268822 - B4 SINE B4 0 292 216 3 1647 982 138 7 14 chr5 139268437 139268584 -13268675 - B1_Mur1 SINE Alu -1 148 3 3 1647 581 276 158 54 chr5 139268584 139268769 -13268490 - B4 SINE B4 -77 215 6 3 1647 636 212 45 0 chr5 139268837 139268969 -13268290 - RSINE1 SINE B4 -15 150 13 3 1647 512 264 174 0 chr5 139269342 139269425 -13267834 - B4 SINE B4 -25 267 159 3 1647 243 0 0 0 chr5 139269425 139269452 -13267807 + (GCTG)n Simple_repeat Simple_repeat 4 30 0 3 1647 512 252 137 0 chr5 139269452 139269540 -13267719 - B4 SINE B4 -134 158 56 3 1647 462 296 171 6 chr5 139270266 139270436 -13266823 + B4 SINE B4 95 292 0 3 1647 1718 203 3 7 chr5 139271178 139271486 -13265773 - MTEa LTR MaLR -72 307 1 3 1647 601 265 38 0 chr5 139271719 139271851 -13265408 - B1F SINE Alu -12 137 1 3 1647 476 186 69 0 chr5 139271855 139271957 -13265302 - PB1D10 SINE Alu 0 117 9 3 1647 190 141 69 14 chr5 139272515 139272587 -13264672 + (TATG)n Simple_repeat Simple_repeat 3 78 0 3 1647 493 354 56 87 chr5 139272624 139272912 -13264347 - B4A SINE B4 0 292 14 3 1647 798 221 4 151 chr5 139272920 139273171 -13264088 - ID_B1 SINE B4 -8 216 3 3 1647 568 255 19 50 chr5 139273582 139273743 -13263516 + B4A SINE B4 1 156 -136 3 1647 354 80 0 0 chr5 139273821 139273871 -13263388 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1647 259 338 0 34 chr5 139274402 139274619 -13262640 + (CATG)n Simple_repeat Simple_repeat 1 209 0 4 1647 1098 275 32 11 chr5 139274695 139274974 -13262285 - B4 SINE B4 -6 286 2 4 1647 356 296 41 57 chr5 139275546 139275668 -13261591 - B4 SINE B4 0 292 173 4 1647 225 0 0 0 chr5 139275738 139275763 -13261496 + (CTG)n Simple_repeat Simple_repeat 1 25 0 4 1647 903 98 0 0 chr5 139275763 139275895 -13261364 + (TTC)n Simple_repeat Simple_repeat 2 133 0 4 1647 735 158 25 16 chr5 139275925 139276172 -13261087 + C-rich Low_complexity Low_complexity 1 249 0 4 1647 188 130 22 0 chr5 139276860 139276906 -13260353 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4 1647 237 203 0 33 chr5 139276935 139276996 -13260263 - B4A SINE B4 -19 273 215 4 1647 357 82 0 0 chr5 139276996 139277045 -13260214 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 4 1647 595 205 0 13 chr5 139277047 139277177 -13260082 - B4A SINE B4 -63 229 106 4 1647 547 187 37 18 chr5 139278045 139278154 -13259105 - B1_Mur4 SINE Alu -12 138 28 4 1647 236 214 43 106 chr5 139278079 139278173 -13259086 - RLTR25B LTR ERVK -529 499 412 4 1647 206 278 41 14 chr5 139278831 139278904 -13258355 - MIR SINE MIR -109 153 79 4 1647 609 52 0 0 chr5 139279464 139279541 -13257718 + (TG)n Simple_repeat Simple_repeat 1 77 0 4 1647 366 42 0 0 chr5 139279541 139279588 -13257671 + (GA)n Simple_repeat Simple_repeat 1 48 0 4 1647 250 213 0 0 chr5 139279589 139279636 -13257623 - B4A SINE B4 -26 266 220 4 1647 346 269 18 53 chr5 139279643 139279744 -13257515 + ID_B1 SINE B4 32 128 -96 4 1647 1096 268 10 59 chr5 139279744 139280049 -13257210 + B4 SINE B4 2 291 -1 4 1647 498 83 0 0 chr5 139280077 139280149 -13257110 + (CA)n Simple_repeat Simple_repeat 1 72 0 4 1647 283 227 0 29 chr5 139280152 139280220 -13257039 + ID_B1 SINE B4 158 223 -1 4 1647 387 0 0 0 chr5 139280600 139280643 -13256616 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1647 792 251 15 105 chr5 139280646 139280710 -13256549 - B4 SINE B4 -4 288 225 4 1647 6735 25 4 5 chr5 139280710 139281547 -13255712 - L1Md_F3 LINE L1 0 6584 5766 4 1647 792 259 17 103 chr5 139281547 139281788 -13255471 - B4 SINE B4 -60 232 2 4 1647 1042 165 78 21 chr5 139282541 139282794 -13254465 - MTEb LTR MaLR -72 307 1 4 1647 283 276 119 119 chr5 139282794 139282821 -13254438 - MLT2B5 LTR ERVL -564 153 127 4 1647 1129 139 99 0 chr5 139284561 139284762 -13252497 + URR1A DNA MER1_type 5 225 -1 4 1647 730 150 0 24 chr5 139284824 139284988 -13252271 + CT-rich Low_complexity Low_complexity 1 160 0 4 1647 833 275 97 34 chr5 139286745 139286770 -13250489 - B4A SINE B4 -2 290 270 4 1647 1032 117 3 0 chr5 139286770 139287053 -13250206 + (TG)n Simple_repeat Simple_repeat 1 283 0 4 1647 833 275 97 34 chr5 139287053 139287292 -13249967 - B4A SINE B4 -23 269 7 4 1647 399 214 165 0 chr5 139287944 139288047 -13249212 + PB1D7 SINE Alu 1 120 0 4 1647 431 184 92 0 chr5 139288052 139288139 -13249120 + RSINE1 SINE B4 6 100 -65 4 1647 860 152 7 0 chr5 139288553 139288704 -13248555 + URR1A DNA MER1_type 75 226 0 4 1647 415 267 42 42 chr5 139288556 139288724 -13248535 - CYRA11_Mm Unknown Y-chromosome -297 320 153 4 1647 522 272 78 39 chr5 139288920 139289100 -13248159 + B4A SINE B4 1 187 -105 4 1647 206 316 26 0 chr5 139289153 139289229 -13248030 + (CATA)n Simple_repeat Simple_repeat 2 79 0 4 1647 394 262 171 17 chr5 139289327 139289502 -13247757 - CYRA11_Mm Unknown Y-chromosome -233 384 183 4 1647 728 209 26 7 chr5 139289350 139289504 -13247755 + URR1A DNA MER1_type 60 216 -10 4 1647 339 314 0 90 chr5 139289704 139289837 -13247422 - MLT1B LTR MaLR -21 369 249 4 1647 447 19 0 0 chr5 139290007 139290059 -13247200 + (GA)n Simple_repeat Simple_repeat 1 52 0 4 1647 942 230 59 0 chr5 139290098 139290302 -13246957 + B3 SINE B2 1 216 0 4 1647 7098 59 36 0 chr5 139290586 139291588 -13245671 + L1_Mus2 LINE L1 5534 6566 0 4 1647 289 220 65 11 chr5 139291739 139291831 -13245428 + RMER15 LTR ERVL 34 130 -445 4 1647 390 304 81 7 chr5 139291933 139292069 -13245190 + RMER15 LTR ERVL 427 572 -3 4 1647 866 267 47 64 chr5 139292732 139293028 -13244231 + B4A SINE B4 2 292 0 4 1647 879 164 137 0 chr5 139293129 139293312 -13243947 - B3 SINE B2 -6 210 3 4 1647 414 0 0 0 chr5 139293328 139293374 -13243885 + (TGG)n Simple_repeat Simple_repeat 1 46 0 4 1647 990 144 191 11 chr5 139293834 139294017 -13243242 + B3 SINE B2 1 216 0 4 1647 302 266 70 52 chr5 139294296 139294411 -13242848 + MLT1G3 LTR MaLR 20 136 -459 4 1647 447 284 0 17 chr5 139294785 139294903 -13242356 - PB1D10 SINE Alu -1 116 1 4 1647 512 245 0 9 chr5 139298159 139298270 -13238989 + PB1D10 SINE Alu 3 112 -5 4 1647 1327 104 5 0 chr5 139301690 139301883 -13235376 + B2_Mm2 SINE B2 1 194 -1 4 1647 743 251 52 1 chr5 139301898 139302105 -13235154 + B3A SINE B2 2 216 0 4 1647 830 189 0 20 chr5 139302111 139302262 -13234997 + B1_Mur1 SINE Alu 2 149 0 4 1647 568 143 49 14 chr5 139302582 139302724 -13234535 + GA-rich Low_complexity Low_complexity 1 147 0 4 1647 1274 61 0 11 chr5 139302736 139302918 -13234341 + (GGGGA)n Simple_repeat Simple_repeat 1 180 0 4 1647 326 228 38 0 chr5 139303451 139303530 -13233729 - B1F2 SINE Alu -45 104 23 4 1647 323 312 10 0 chr5 139303540 139303636 -13233623 - B1_Mm SINE Alu -50 97 1 4 1647 387 339 5 136 chr5 139303636 139303742 -13233517 - ID SINE ID -143 81 1 4 1647 273 276 11 22 chr5 139304826 139304915 -13232344 + (CA)n Simple_repeat Simple_repeat 1 88 0 4 1647 1976 276 42 147 chr5 139306394 139306686 -13230573 - RCHARR1 DNA MER1_type -35 939 760 4 1647 334 0 43 0 chr5 139306686 139306732 -13230527 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 4 1647 613 222 0 36 chr5 139306733 139306873 -13230386 - B1_Mus2 SINE Alu -12 135 1 4 1647 1976 276 42 147 chr5 139306873 139307312 -13229947 - RCHARR1 DNA MER1_type -215 759 307 4 1647 561 222 193 0 chr5 139307312 139307488 -13229771 + B3 SINE B2 2 211 -5 4 1647 1976 276 42 147 chr5 139307488 139307728 -13229531 - RCHARR1 DNA MER1_type -668 306 67 4 1647 3087 130 52 23 chr5 139307744 139308304 -13228955 - RMER4B LTR ERVK -8 577 2 4 1647 1122 133 53 0 chr5 139308963 139309151 -13228108 + URR1A DNA MER1_type 29 226 0 4 1647 389 349 11 56 chr5 139309217 139309396 -13227863 + RCHARR1 DNA MER1_type 7 177 -797 4 1647 935 243 12 111 chr5 139310258 139310478 -13226781 + B4A SINE B4 1 211 -81 4 1647 1163 161 19 0 chr5 139310478 139310683 -13226576 + B3 SINE B2 1 209 -7 4 1647 935 243 12 111 chr5 139310683 139310771 -13226488 + B4A SINE B4 212 278 -14 4 1647 297 75 0 0 chr5 139310771 139310811 -13226448 + (TG)n Simple_repeat Simple_repeat 1 40 0 4 1647 935 243 12 111 chr5 139310811 139310825 -13226434 + B4A SINE B4 279 292 0 4 1647 194 253 63 51 chr5 139311095 139311174 -13226085 + L2c LINE L2 3111 3190 -197 4 1647 868 247 36 0 chr5 139311397 139311591 -13225668 + ID_B1 SINE B4 12 212 -12 4 1647 351 0 0 0 chr5 139311593 139311632 -13225627 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1647 351 0 0 0 chr5 139311632 139311670 -13225589 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1647 25 0 0 0 chr5 139311709 139311734 -13225525 + AT_rich Low_complexity Low_complexity 1 25 0 4 1647 941 241 44 22 chr5 139311803 139311996 -13225263 + MTD LTR MaLR 10 209 -210 4 1647 840 154 21 0 chr5 139311996 139312139 -13225120 + B1_Mus1 SINE Alu 1 146 -2 4 1647 468 0 0 0 chr5 139312142 139312194 -13225065 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 4 1647 941 241 44 22 chr5 139312194 139312267 -13224992 + MTD LTR MaLR 210 284 -135 4 1647 296 265 15 0 chr5 139312210 139312278 -13224981 + B4A SINE B4 224 292 0 4 1647 443 325 42 0 chr5 139312299 139312490 -13224769 - B4A SINE B4 -92 200 2 4 1647 567 307 16 96 chr5 139312490 139312722 -13224537 - B4A SINE B4 -62 230 19 4 1647 1951 192 53 15 chr5 139312722 139313118 -13224141 + MTC LTR MaLR 3 413 -8 4 1647 854 148 142 0 chr5 139313201 139313356 -13223903 + B2_Mm2 SINE B2 1 177 -18 4 1647 1170 134 0 0 chr5 139313359 139313686 -13223573 + (TATG)n Simple_repeat Simple_repeat 1 327 0 4 1647 367 302 25 25 chr5 139313687 139313809 -13223450 + L1MCa LINE L1 1891 2012 -4496 4 1647 499 305 117 20 chr5 139313854 139314195 -13223064 + L1MCa LINE L1 2864 3237 -3084 4 1647 305 305 42 8 chr5 139314201 139314320 -13222939 + MLT1A1 LTR MaLR 1 123 -285 4 1647 259 309 24 12 chr5 139314387 139314469 -13222790 + B1F SINE Alu 1 83 -66 4 1647 258 56 0 0 chr5 139314502 139314538 -13222721 + (A)n Simple_repeat Simple_repeat 1 36 0 4 1647 324 0 0 0 chr5 139314539 139314575 -13222684 + (GA)n Simple_repeat Simple_repeat 2 37 0 4 1647 960 251 62 14 chr5 139314575 139314850 -13222409 + B4A SINE B4 4 291 -1 4 1647 1581 229 72 25 chr5 139315564 139316035 -13221224 + RLTR26 LTR ERVK 1 493 -149 4 1647 615 251 81 68 chr5 139316124 139316359 -13220900 - RMER15 LTR ERVL -45 530 293 4 1647 700 238 24 0 chr5 139316470 139316634 -13220625 + MTEa LTR MaLR 10 177 -202 4 1647 1223 212 76 74 chr5 139316663 139317030 -13220229 - ORR1D1 LTR MaLR -4 370 3 4 1647 1022 179 15 10 chr5 139317033 139317231 -13220028 + MTEa LTR MaLR 181 379 0 4 1647 437 319 41 62 chr5 139317451 139317600 -13219659 - L1MEf LINE L1 -1951 4195 4040 4 1647 2547 33 0 163 chr5 139317600 139318036 -13219223 - RLTR10B2 LTR ERVK 0 365 1 4 1647 437 319 41 62 chr5 139318036 139318130 -13219129 - L1MEf LINE L1 -2107 4039 3957 4 1647 361 348 95 19 chr5 139318151 139318362 -13218897 - L1MEf LINE L1 -4852 1390 1164 4 1647 386 313 35 9 chr5 139318526 139318642 -13218617 + RMER15 LTR ERVL 288 406 -169 4 1647 484 27 13 13 chr5 139318662 139318738 -13218521 + ZP3AR Satellite Satellite 39 114 -98 4 1647 215 135 0 0 chr5 139318749 139318786 -13218473 + ID4 SINE ID 46 82 -1 4 1647 345 100 0 0 chr5 139318859 139318909 -13218350 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1647 202 0 59 29 chr5 139320039 139320073 -13217186 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1647 394 242 32 118 chr5 139320137 139320324 -13216935 + MTEb LTR MaLR 206 376 -3 4 1647 966 279 30 79 chr5 139320350 139320653 -13216606 + B4 SINE B4 3 290 -2 4 1647 430 273 40 7 chr5 139320688 139320839 -13216420 + L1M3 LINE L1 5308 5463 -717 4 1647 496 234 54 0 chr5 139320853 139320964 -13216295 + RSINE1 SINE B4 3 119 -46 5 1647 322 293 102 17 chr5 139320992 139321169 -13216090 + L1M3 LINE L1 5476 5667 -507 4 1647 641 305 30 42 chr5 139321184 139321420 -13215839 + B4 SINE B4 45 277 -15 5 1647 1339 83 16 10 chr5 139321474 139321668 -13215591 - B2_Mm2 SINE B2 0 195 1 5 1647 866 248 39 23 chr5 139322012 139322297 -13214962 - B4A SINE B4 0 292 1 5 1647 452 215 54 45 chr5 139323172 139323284 -13213975 - B1_Mur1 SINE Alu -5 144 32 5 1647 428 242 213 76 chr5 139323316 139323513 -13213746 - ID_B1 SINE B4 0 224 1 5 1647 254 29 29 0 chr5 139323513 139323548 -13213711 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 5 1647 333 160 0 0 chr5 139323550 139323617 -13213642 - B1F SINE Alu -5 144 46 5 1647 558 0 0 0 chr5 139324054 139324116 -13213143 + (CA)n Simple_repeat Simple_repeat 2 63 0 5 1647 958 146 30 6 chr5 139325204 139325369 -13211890 - URR1B DNA MER1_type -2 223 55 5 1647 213 39 0 0 chr5 139325758 139325784 -13211475 + (CTCG)n Simple_repeat Simple_repeat 1 26 0 5 1647 1705 164 17 97 chr5 139328273 139328631 -13208628 + ORR1D1 LTR MaLR 3 345 -29 5 1647 672 255 87 20 chr5 139328631 139328827 -13208432 - B3 SINE B2 -6 210 2 5 1647 1705 164 17 97 chr5 139328827 139328872 -13208387 + ORR1D1 LTR MaLR 346 374 0 5 1647 1059 239 52 4 chr5 139328896 139329165 -13208094 + B4A SINE B4 2 283 -9 5 1647 212 280 0 0 chr5 139329193 139329243 -13208016 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 5 1648 499 276 7 33 chr5 139329919 139330069 -13207190 - B1F SINE Alu -1 148 3 5 1648 442 260 29 0 chr5 139330102 139330206 -13207053 + PB1D10 SINE Alu 5 111 -6 5 1648 400 211 0 13 chr5 139330664 139330741 -13206518 + B4 SINE B4 2 77 -215 5 1648 492 299 63 36 chr5 139330766 139330988 -13206271 + RMER15 LTR ERVL 347 574 -1 5 1648 848 128 12 43 chr5 139331060 139331223 -13206036 - B2_Mm2 SINE B2 0 195 38 5 1648 377 310 53 0 chr5 139331364 139331477 -13205782 - PB1D7 SINE Alu -1 119 1 5 1648 619 266 40 23 chr5 139331515 139331692 -13205567 + B3A SINE B2 3 182 -16 5 1648 524 244 0 6 chr5 139331742 139331923 -13205336 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1648 628 215 6 11 chr5 139331912 139332086 -13205173 + (CATATA)n Simple_repeat Simple_repeat 4 176 0 5 1648 760 254 26 5 chr5 139332129 139332313 -13204946 + ID_B1 SINE B4 2 189 -35 5 1648 1988 150 88 13 chr5 139332313 139332697 -13204562 + MTC LTR MaLR 1 413 -8 5 1648 210 143 0 0 chr5 139333079 139333114 -13204145 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 5 1648 219 326 0 21 chr5 139334286 139334383 -13202876 + (CATA)n Simple_repeat Simple_repeat 2 96 0 5 1648 318 136 0 63 chr5 139334424 139334487 -13202772 + HAL1-3A_ME LINE L1 1969 2027 -831 5 1648 299 364 0 0 chr5 139334522 139334676 -13202583 + (CA)n Simple_repeat Simple_repeat 1 154 0 5 1648 286 378 104 19 chr5 139335209 139335468 -13201791 + MLT1K LTR MaLR 129 409 -186 5 1648 1276 240 102 6 chr5 139336048 139336371 -13200888 + MTD LTR MaLR 5 358 -61 5 1648 738 282 41 41 chr5 139338024 139338242 -13199017 + ID_B1 SINE B4 7 224 0 5 1648 239 261 29 0 chr5 139338277 139338346 -13198913 - MLT1C LTR MaLR -351 116 46 5 1648 1166 230 120 56 chr5 139338522 139338914 -13198345 + MTD LTR MaLR 1 417 -2 5 1648 306 346 12 25 chr5 139342004 139342242 -13195017 + (TATATG)n Simple_repeat Simple_repeat 1 235 0 5 1648 213 222 0 0 chr5 139342270 139342315 -13194944 + (TATG)n Simple_repeat Simple_repeat 2 46 0 5 1648 453 114 284 0 chr5 139342495 139342583 -13194676 - B1_Mur1 SINE Alu -13 136 24 5 1648 2001 209 41 41 chr5 139342599 139342929 -13194330 - Lx5 LINE L1 0 7050 6731 5 1648 2664 68 0 0 chr5 139342929 139343253 -13194006 + ORR1A2 LTR MaLR 4 327 0 5 1648 2001 209 41 41 chr5 139343253 139343361 -13193898 - Lx5 LINE L1 -320 6730 6612 5 1648 603 74 0 0 chr5 139345738 139345819 -13191440 + (CA)n Simple_repeat Simple_repeat 2 82 0 5 1648 387 191 11 23 chr5 139345826 139346003 -13191256 + (CAGA)n Simple_repeat Simple_repeat 4 178 0 5 1648 186 278 10 118 chr5 139346285 139346387 -13190872 - L3 LINE CR1 -28 4461 4371 5 1648 1520 58 38 0 chr5 139347413 139347697 -13189562 - ZP3AR Satellite Satellite -130 294 1 5 1648 301 376 0 0 chr5 139347717 139347826 -13189433 - ID_B1 SINE B4 -8 216 108 5 1648 253 240 107 0 chr5 139348248 139348323 -13188936 - MIRm SINE MIR -124 152 70 5 1648 512 230 26 17 chr5 139348468 139348583 -13188676 - PB1D10 SINE Alu 0 117 2 5 1648 237 180 0 0 chr5 139348623 139348673 -13188586 + (TG)n Simple_repeat Simple_repeat 2 51 0 5 1648 808 262 143 28 chr5 139348690 139348731 -13188528 - B4A SINE B4 -6 286 251 5 1648 2674 57 45 0 chr5 139348731 139349062 -13188197 - ORR1A1 LTR MaLR 0 346 1 5 1648 808 262 143 28 chr5 139349062 139349271 -13187988 - B4A SINE B4 -42 250 7 5 1648 225 148 0 129 chr5 139350009 139350071 -13187188 - MIR SINE MIR -63 145 92 5 1648 488 264 32 8 chr5 139350393 139350519 -13186740 + B1F SINE Alu 13 141 -8 5 1648 251 309 25 0 chr5 139350586 139350667 -13186592 + ID4 SINE ID 1 83 0 5 1648 315 157 0 0 chr5 139350669 139350739 -13186520 + GA-rich Low_complexity Low_complexity 1 70 0 5 1648 415 321 58 9 chr5 139351654 139351877 -13185382 - MIRb SINE MIR -33 235 2 5 1648 418 254 86 2 chr5 139352208 139352335 -13184924 + B4A SINE B4 4 135 -89 5 1648 379 219 168 0 chr5 139352475 139352594 -13184665 + B1_Mur2 SINE Alu 1 139 -10 5 1648 732 86 0 0 chr5 139352672 139352777 -13184482 + (CA)n Simple_repeat Simple_repeat 2 106 0 5 1648 350 314 90 100 chr5 139352998 139353288 -13183971 + ORR1E LTR MaLR 23 309 -50 5 1648 417 39 0 0 chr5 139353290 139353341 -13183918 + (TG)n Simple_repeat Simple_repeat 1 51 0 5 1648 830 295 30 82 chr5 139353355 139353658 -13183601 - B4A SINE B4 -2 290 4 5 1648 347 349 95 12 chr5 139354103 139354271 -13182988 - RMER15 LTR ERVL -46 529 348 5 1648 1765 209 24 3 chr5 139355062 139355402 -13181857 + MTEa LTR MaLR 28 374 -5 5 1648 747 181 31 0 chr5 139355448 139355575 -13181684 - B1_Mur4 SINE Alu -18 132 2 5 1648 207 331 16 44 chr5 139356471 139356654 -13180605 + (TATG)n Simple_repeat Simple_repeat 1 178 0 5 1648 1130 282 43 4 chr5 139358320 139358578 -13178681 + B4A SINE B4 1 270 -22 5 1648 315 0 0 0 chr5 139358578 139358613 -13178646 + (CA)n Simple_repeat Simple_repeat 1 35 0 5 1648 1130 282 43 4 chr5 139358613 139358635 -13178624 + B4A SINE B4 271 292 0 5 1648 180 357 14 0 chr5 139360111 139360181 -13177078 + MIRb SINE MIR 88 158 -110 5 1648 632 235 4 0 chr5 139360243 139360479 -13176780 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 5 1648 270 333 18 0 chr5 139360481 139360649 -13176610 + (TGGA)n Simple_repeat Simple_repeat 1 171 0 5 1648 822 248 38 101 chr5 139361365 139361652 -13175607 - B4 SINE B4 0 292 24 5 1648 1337 231 63 13 chr5 139362585 139362884 -13174375 - MTE2b LTR MaLR -65 314 1 5 1648 204 284 22 43 chr5 139362936 139363028 -13174231 + MIR SINE MIR 98 187 -75 5 1648 645 310 45 5 chr5 139363550 139363751 -13173508 + B4 SINE B4 2 210 -82 5 1648 565 252 41 14 chr5 139365371 139365516 -13171743 - B1F SINE Alu 0 149 1 5 1648 545 286 35 28 chr5 139366313 139366457 -13170802 + B1F SINE Alu 4 148 -1 5 1648 513 316 67 41 chr5 139366462 139366657 -13170602 + B4A SINE B4 6 205 -87 5 1648 259 65 62 31 chr5 139367401 139367465 -13169794 + C-rich Low_complexity Low_complexity 6 71 0 5 1648 396 303 131 75 chr5 139367522 139367804 -13169455 + ORR1D2 LTR MaLR 51 348 -22 5 1648 342 283 53 38 chr5 139367849 139367981 -13169278 + B1F SINE Alu 1 134 -15 5 1648 1306 194 204 13 chr5 139367981 139368294 -13168965 - ORR1D1 LTR MaLR -1 373 1 5 1648 1541 59 9 12 chr5 139368336 139368860 -13168399 + ZP3AR Satellite Satellite 1 522 -2 5 1648 546 276 41 0 chr5 139368843 139368966 -13168293 + RSINE1 SINE B4 2 129 -36 5 1648 38 61 0 0 chr5 139369325 139369391 -13167868 + AT_rich Low_complexity Low_complexity 1 66 0 5 1648 1176 121 17 0 chr5 139369391 139369564 -13167695 - B2_Mm2 SINE B2 -19 176 1 5 1648 858 249 5 25 chr5 139369638 139369836 -13167423 - B3A SINE B2 -3 195 2 5 1648 392 318 70 0 chr5 139369982 139370111 -13167148 - ID_B1 SINE B4 -62 162 25 5 1648 398 219 72 54 chr5 139370127 139370238 -13167021 - PB1D10 SINE Alu -2 115 3 5 1648 611 325 74 11 chr5 139371150 139371421 -13165838 + B4 SINE B4 5 292 0 5 1648 237 178 0 0 chr5 139371422 139371467 -13165792 + (CATA)n Simple_repeat Simple_repeat 2 46 0 5 1648 441 297 96 69 chr5 139371494 139371682 -13165577 + B4A SINE B4 2 194 -98 5 1648 228 354 110 7 chr5 139372190 139372335 -13164924 - MIR SINE MIR -86 176 17 5 1648 477 332 78 0 chr5 139372435 139372628 -13164631 + L1MB3 LINE L1 5832 6039 -144 5 1648 405 0 0 0 chr5 139372664 139372709 -13164550 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1648 1010 217 27 78 chr5 139372787 139373073 -13164186 + B4 SINE B4 3 274 -18 5 1648 258 56 0 0 chr5 139373097 139373133 -13164126 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1648 333 0 0 0 chr5 139373185 139373222 -13164037 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 5 1648 447 357 60 23 chr5 139375551 139375766 -13161493 - MER63B DNA AcHobo -12 424 202 5 1648 1493 69 16 1 chr5 139375826 139376432 -13160827 - ZP3AR Satellite Satellite -21 614 1 5 1648 929 256 79 8 chr5 139376478 139376762 -13160497 - B4 SINE B4 -8 284 6 5 1648 669 286 20 39 chr5 139376763 139376967 -13160292 - B4A SINE B4 -81 211 12 5 1648 230 271 0 17 chr5 139376983 139377043 -13160216 - ID_B1 SINE B4 -2 222 164 6 1648 681 255 34 4 chr5 139377414 139377611 -13159648 - Lx3C LINE L1 -434 6605 6421 6 1648 323 303 98 46 chr5 139377662 139377857 -13159402 - Lx3C LINE L1 -890 6414 6210 6 1648 213 39 0 0 chr5 139377860 139377886 -13159373 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 6 1648 375 23 0 0 chr5 139377919 139377963 -13159296 + (TTG)n Simple_repeat Simple_repeat 2 45 0 6 1648 295 344 19 7 chr5 139377963 139378118 -13159141 - L1MD LINE L1 -954 5192 5036 6 1648 674 12 12 0 chr5 139378122 139378205 -13159054 + (TG)n Simple_repeat Simple_repeat 2 85 0 6 1648 1900 244 37 24 chr5 139378208 139378755 -13158504 - RLTR20B3 LTR ERVK 0 577 24 6 1648 989 271 17 0 chr5 139378787 139379027 -13158232 - B4A SINE B4 -48 244 1 6 1648 487 272 196 15 chr5 139379179 139379389 -13157870 + B4A SINE B4 21 270 -22 6 1648 213 108 0 0 chr5 139379389 139379426 -13157833 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1648 433 303 27 27 chr5 139379426 139379449 -13157810 + B4A SINE B4 271 292 0 6 1648 290 260 45 40 chr5 139379464 139379640 -13157619 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 6 1648 329 285 225 0 chr5 139379650 139379801 -13157458 - Lx3C LINE L1 -1209 5797 5613 6 1648 521 212 0 6 chr5 139380142 139380322 -13156937 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1648 1002 88 0 0 chr5 139380339 139380499 -13156760 + (TG)n Simple_repeat Simple_repeat 1 160 0 6 1648 803 218 0 0 chr5 139380519 139380666 -13156593 - B1_Mur1 SINE Alu -1 148 2 6 1648 860 207 109 0 chr5 139380713 139380906 -13156353 - B3 SINE B2 0 216 3 6 1648 423 302 111 22 chr5 139380908 139381179 -13156080 - Lx3C LINE L1 -2802 4204 3910 6 1648 302 319 62 28 chr5 139381255 139381270 -13155989 - Lx3C LINE L1 -3752 3254 3240 6 1648 1138 95 0 0 chr5 139381270 139381417 -13155842 - B1_Mus1 SINE Alu 0 148 2 6 1648 327 271 65 32 chr5 139381417 139381546 -13155713 - Lx3C LINE L1 -3677 3657 3531 6 1648 334 200 0 51 chr5 139381627 139381706 -13155553 - Lx9 LINE L1 -506 7138 7064 6 1648 27 29 0 0 chr5 139381813 139381847 -13155412 + AT_rich Low_complexity Low_complexity 1 34 0 6 1648 1096 77 25 242 chr5 139381855 139382095 -13155164 + B2_Mm2 SINE B2 1 188 -7 6 1648 2069 155 28 82 chr5 139382163 139382509 -13154750 + ORR1C1 LTR MaLR 1 320 -58 6 1648 1175 104 60 11 chr5 139382509 139382694 -13154565 + B2_Mm2 SINE B2 1 194 -1 6 1648 2069 155 28 82 chr5 139382694 139382747 -13154512 + ORR1C1 LTR MaLR 321 377 -1 6 1648 290 123 0 17 chr5 139382872 139382930 -13154329 + (TTA)n Simple_repeat Simple_repeat 3 59 0 6 1648 634 229 76 0 chr5 139383167 139383311 -13153948 - MTEb LTR MaLR 0 379 225 6 1648 1026 59 0 0 chr5 139383334 139383469 -13153790 - B1_Mm SINE Alu 0 147 13 6 1648 1772 132 105 81 chr5 139383468 139383840 -13153419 + ORR1B1 LTR MaLR 14 394 0 6 1648 887 260 40 22 chr5 139383840 139384066 -13153193 - MTEb LTR MaLR -147 232 3 6 1648 1359 101 9 0 chr5 139384360 139384618 -13152641 - ZP3AR Satellite Satellite -19 260 1 6 1648 320 305 41 41 chr5 139384647 139384794 -13152465 - B1F SINE Alu -2 147 1 6 1648 776 212 0 0 chr5 139385798 139385935 -13151324 + RSINE1 SINE B4 10 146 -19 6 1648 861 96 30 19 chr5 139385945 139386211 -13151048 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 6 1648 496 259 35 14 chr5 139386734 139386875 -13150384 + B1F SINE Alu 1 144 -5 6 1648 440 227 11 0 chr5 139386896 139386984 -13150275 + ZP3AR Satellite Satellite 47 135 -77 6 1648 198 0 0 0 chr5 139387032 139387054 -13150205 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1648 213 39 0 0 chr5 139388336 139388362 -13148897 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1648 333 0 0 0 chr5 139388479 139388516 -13148743 + (GA)n Simple_repeat Simple_repeat 2 38 0 6 1648 299 248 36 54 chr5 139388565 139388676 -13148583 + L1M2 LINE L1 5160 5268 -875 6 1648 590 271 14 38 chr5 139388728 139388939 -13148320 + B4A SINE B4 1 206 -86 6 1648 397 218 72 9 chr5 139389041 139389152 -13148107 + B1F SINE Alu 32 149 0 6 1648 1464 48 13 0 chr5 139389159 139389485 -13147774 + ZP3AR Satellite Satellite 1 330 -1 6 1648 668 243 72 62 chr5 139389423 139389722 -13147537 + B4A SINE B4 1 290 -2 6 1648 267 284 23 0 chr5 139389723 139389811 -13147448 + (CA)n Simple_repeat Simple_repeat 2 91 0 6 1648 636 152 0 50 chr5 139389815 139389995 -13147264 + (CATA)n Simple_repeat Simple_repeat 4 174 0 6 1648 209 169 0 17 chr5 139390015 139390075 -13147184 + (CATA)n Simple_repeat Simple_repeat 4 62 0 6 1648 1218 61 0 0 chr5 139390078 139390225 -13147034 + B1_Mus1 SINE Alu 2 148 0 6 1648 24 0 0 0 chr5 139390225 139390249 -13147010 + AT_rich Low_complexity Low_complexity 1 24 0 6 1648 224 213 0 0 chr5 139390998 139391045 -13146214 + C-rich Low_complexity Low_complexity 6 52 0 6 1648 581 244 16 8 chr5 139392747 139392875 -13144384 + B4 SINE B4 26 154 -138 6 1648 429 20 0 0 chr5 139392887 139392937 -13144322 + (TCC)n Simple_repeat Simple_repeat 1 50 0 6 1648 603 278 12 31 chr5 139393053 139393213 -13144046 - RSINE1 SINE B4 -4 161 5 6 1648 379 289 30 14 chr5 139393221 139393359 -13143900 - PB1D10 SINE Alu 0 149 1 6 1648 569 260 43 51 chr5 139393369 139393585 -13143674 - B3A SINE B2 0 216 7 6 1648 377 233 164 10 chr5 139393758 139393862 -13143397 + PB1D7 SINE Alu 1 120 0 6 1648 529 351 14 64 chr5 139393902 139394121 -13143138 + B4 SINE B4 85 292 0 6 1648 695 201 14 20 chr5 139394138 139394285 -13142974 - B1_Mur4 SINE Alu -2 148 3 6 1648 945 278 0 5 chr5 139394285 139394474 -13142785 - B4A SINE B4 -103 189 2 6 1648 368 309 14 28 chr5 139395302 139395470 -13141789 - L1MEf LINE L1 -4074 2126 1957 6 1648 291 317 35 122 chr5 139395534 139395832 -13141427 + Charlie1b DNA MER1_type 45 304 -219 6 1648 476 92 0 26 chr5 139395843 139395921 -13141338 - PB1D10 SINE Alu 0 117 42 6 1648 23 0 0 0 chr5 139396828 139396851 -13140408 + AT_rich Low_complexity Low_complexity 1 23 0 6 1648 752 188 0 0 chr5 139396864 139396997 -13140262 + B1_Mur1 SINE Alu 17 149 0 6 1648 429 228 0 61 chr5 139397018 139397116 -13140143 + PB1D9 SINE Alu 28 119 -1 6 1648 823 166 29 0 chr5 139397616 139397755 -13139504 + B1_Mur3 SINE Alu 1 143 -6 6 1648 351 0 0 0 chr5 139397787 139397826 -13139433 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1648 618 14 0 0 chr5 139397826 139397896 -13139363 + (GA)n Simple_repeat Simple_repeat 2 72 0 6 1648 686 223 28 113 chr5 139398293 139398652 -13138607 - MTD LTR MaLR -15 404 60 6 1648 421 260 0 29 chr5 139400155 139400258 -13137001 + B4A SINE B4 26 125 -167 6 1648 779 164 7 0 chr5 139400311 139400463 -13136796 + GA-rich Low_complexity Low_complexity 1 153 0 6 1648 226 279 43 103 chr5 139401001 139401117 -13136142 - MER63D DNA AcHobo -673 388 280 6 1648 378 309 17 6 chr5 139401286 139401462 -13135797 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 6 1648 236 372 7 7 chr5 139401385 139401523 -13135736 + (CCCA)n Simple_repeat Simple_repeat 3 140 0 6 1648 573 277 13 33 chr5 139401995 139402148 -13135111 + RSINE1 SINE B4 3 152 -13 6 1648 1581 31 9 0 chr5 139402292 139402698 -13134561 + ZP3AR Satellite Satellite 1 409 0 6 1648 375 23 0 0 chr5 139402725 139402769 -13134490 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1648 235 337 12 12 chr5 139402772 139402856 -13134403 + B4 SINE B4 3 86 -206 6 1648 761 261 149 0 chr5 139404001 139404189 -13133070 + ID_B1 SINE B4 2 217 -7 6 1648 382 267 137 29 chr5 139404785 139404924 -13132335 + MLT1K LTR MaLR 365 518 -77 6 1648 273 161 0 2 chr5 139405158 139405209 -13132050 + MIRc SINE MIR 80 129 -147 6 1648 636 208 28 7 chr5 139405232 139405377 -13131882 + B3 SINE B2 55 202 -14 6 1648 521 281 122 14 chr5 139406853 139407001 -13130258 + RSINE1 SINE B4 2 165 0 6 1648 679 173 17 11 chr5 139409288 139409463 -13127796 + CT-rich Low_complexity Low_complexity 2 177 0 6 1648 563 222 0 33 chr5 139409431 139409613 -13127646 + C-rich Low_complexity Low_complexity 4 179 0 6 1648 310 385 0 22 chr5 139409841 139410024 -13127235 + (CA)n Simple_repeat Simple_repeat 1 179 0 6 1648 407 221 0 11 chr5 139410148 139410235 -13127024 - PB1D7 SINE Alu -1 119 34 6 1648 1508 71 30 5 chr5 139410999 139411609 -13125650 + ZP3AR Satellite Satellite 1 625 -1 6 1648 237 287 126 0 chr5 139412132 139412219 -13125040 + MER21B LTR ERV1 216 313 -550 6 1648 203 259 19 0 chr5 139413311 139413365 -13123894 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 6 1648 743 232 26 6 chr5 139413378 139413721 -13123538 + (TGGA)n Simple_repeat Simple_repeat 1 350 0 6 1648 492 239 69 56 chr5 139414641 139414804 -13122455 - B4 SINE B4 -99 193 27 6 1648 469 259 62 75 chr5 139416195 139416242 -13121017 + B4 SINE B4 1 51 -241 6 1648 1679 212 121 45 chr5 139416242 139416730 -13120529 - RLTR11A LTR ERVK 0 528 4 6 1648 469 259 62 75 chr5 139416730 139416828 -13120431 + B4 SINE B4 52 144 -148 6 1648 679 305 94 26 chr5 139416846 139417112 -13120147 + B4A SINE B4 8 291 -1 6 1648 384 195 0 13 chr5 139417119 139417197 -13120062 + ID_B1 SINE B4 142 218 -6 6 1648 189 0 0 0 chr5 139417197 139417218 -13120041 + (GA)n Simple_repeat Simple_repeat 2 22 0 6 1648 805 245 35 35 chr5 139417418 139417526 -13119733 + B3 SINE B2 18 132 -84 6 1648 429 20 0 0 chr5 139417526 139417576 -13119683 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1648 805 245 35 35 chr5 139417576 139417638 -13119621 + B3 SINE B2 133 189 -27 6 1648 3469 98 102 46 chr5 139417638 139418206 -13119053 + MT2B LTR ERVL 2 601 0 6 1648 805 245 35 35 chr5 139418206 139418233 -13119026 + B3 SINE B2 190 215 -1 6 1648 615 312 18 14 chr5 139418463 139418684 -13118575 + B4A SINE B4 1 222 -70 6 1648 259 277 145 103 chr5 139418901 139419046 -13118213 - RSINE1 SINE B4 0 165 15 6 1648 389 332 88 32 chr5 139419114 139419363 -13117896 + L1M5 LINE L1 5135 5397 -749 6 1648 1532 43 14 0 chr5 139419581 139419850 -13117409 + ZP3AR Satellite Satellite 1 272 -1 6 1648 333 0 0 0 chr5 139419850 139419887 -13117372 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1648 1237 83 56 11 chr5 139419887 139419952 -13117307 + ZP3AR Satellite Satellite 101 209 -3 6 1648 563 249 284 18 chr5 139420193 139420418 -13116841 - B4A SINE B4 -6 286 2 6 1648 227 186 0 23 chr5 139422471 139422515 -13114744 - ID4 SINE ID -27 56 14 6 1648 863 115 7 0 chr5 139422544 139422683 -13114576 + (TC)n Simple_repeat Simple_repeat 2 141 0 7 1648 435 19 0 0 chr5 139422689 139422741 -13114518 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1648 626 254 7 27 chr5 139422783 139422933 -13114326 - B4A SINE B4 -145 147 1 7 1648 1195 258 30 0 chr5 139423418 139423682 -13113577 + B4 SINE B4 7 278 -14 7 1648 437 269 22 44 chr5 139426247 139426430 -13110829 + GA-rich Low_complexity Low_complexity 2 180 0 7 1648 1849 206 85 5 chr5 139426496 139426930 -13110329 + Lx9 LINE L1 7049 7517 -127 7 1648 739 217 23 9 chr5 139426955 139427174 -13110085 + Lx9 LINE L1 7421 7642 -2 7 1648 211 230 82 6 chr5 139428155 139428236 -13109023 - MIRc SINE MIR -89 119 30 7 1648 1410 79 2 32 chr5 139430799 139431393 -13105866 - ZP3AR Satellite Satellite -21 576 1 7 1648 346 252 16 80 chr5 139431396 139431521 -13105738 - PB1D10 SINE Alu 0 117 1 7 1648 613 227 45 8 chr5 139431544 139431677 -13105582 + RSINE1 SINE B4 2 139 -26 7 1648 306 0 0 0 chr5 139431677 139431711 -13105548 + (CA)n Simple_repeat Simple_repeat 1 34 0 7 1648 261 219 14 99 chr5 139433449 139433520 -13103739 + MER3 DNA MER1_type 21 85 -124 7 1648 254 256 33 4 chr5 139433548 139433659 -13103600 - MER3 DNA MER1_type -95 114 1 7 1648 302 311 174 19 chr5 139433714 139433927 -13103332 - MLT1C LTR MaLR -26 441 196 7 1648 297 0 0 0 chr5 139433935 139433968 -13103291 + (TG)n Simple_repeat Simple_repeat 2 34 0 7 1648 309 26 0 0 chr5 139433968 139434006 -13103253 + (GA)n Simple_repeat Simple_repeat 1 38 0 7 1648 1399 109 9 52 chr5 139434140 139434373 -13102886 - URR1A DNA MER1_type 0 226 4 7 1648 202 320 0 0 chr5 139434553 139434603 -13102656 + (TGGG)n Simple_repeat Simple_repeat 4 53 0 7 1648 254 372 35 0 chr5 139435592 139435705 -13101554 - MLT1L LTR MaLR -173 437 321 7 1648 400 216 186 0 chr5 139436279 139436376 -13100883 - ID_B1 SINE B4 -8 216 102 7 1648 226 116 65 65 chr5 139436533 139436579 -13100680 - PB1D10 SINE Alu -1 116 71 7 1648 638 226 23 0 chr5 139436538 139436671 -13100588 - ID_B1 SINE B4 -3 221 86 7 1648 636 315 55 75 chr5 139436708 139437000 -13100259 - B4A SINE B4 -3 289 4 7 1648 676 248 7 13 chr5 139437311 139437466 -13099793 + RSINE1 SINE B4 3 156 -9 7 1648 302 286 33 0 chr5 139437578 139437669 -13099590 + B1F SINE Alu 32 125 -24 7 1648 183 42 0 0 chr5 139437683 139437707 -13099552 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1648 228 35 0 0 chr5 139437783 139437812 -13099447 + (CA)n Simple_repeat Simple_repeat 1 29 0 7 1648 1225 22 0 0 chr5 139437857 139437994 -13099265 + B1_Mus2 SINE Alu 2 138 -9 7 1648 216 0 0 0 chr5 139437994 139438018 -13099241 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1648 270 278 139 29 chr5 139438018 139438252 -13099007 + MLT1C LTR MaLR 29 299 -91 7 1648 185 154 26 0 chr5 139438321 139438360 -13098899 + CT-rich Low_complexity Low_complexity 4 43 0 7 1648 440 333 24 42 chr5 139438380 139438624 -13098635 - B4A SINE B4 -49 243 3 7 1648 820 224 71 24 chr5 139439631 139439841 -13097418 + ID_B1 SINE B4 2 221 -3 7 1648 2993 72 5 5 chr5 139440247 139440638 -13096621 + L1Md_F2 LINE L1 6191 6581 -1 7 1648 1431 131 3 21 chr5 139440742 139441065 -13096194 + (TGGA)n Simple_repeat Simple_repeat 1 317 0 7 1648 229 351 13 0 chr5 139441075 139441152 -13096107 + (TAGG)n Simple_repeat Simple_repeat 2 79 0 7 1648 246 116 0 0 chr5 139441153 139441196 -13096063 + (TGGG)n Simple_repeat Simple_repeat 2 44 0 7 1648 830 288 96 11 chr5 139442994 139443254 -13094005 - B4A SINE B4 -10 282 1 7 1648 392 257 18 0 chr5 139443743 139443856 -13093403 + L1M4 LINE L1 2710 2824 -3322 7 1648 303 251 28 6 chr5 139443912 139444088 -13093171 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 7 1648 722 204 26 0 chr5 139444180 139444526 -13092733 + (TGGA)n Simple_repeat Simple_repeat 1 355 0 7 1648 575 237 6 0 chr5 139444553 139444730 -13092529 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 7 1648 680 186 20 0 chr5 139444771 139445126 -13092133 + (TGGA)n Simple_repeat Simple_repeat 1 362 0 7 1648 225 258 45 0 chr5 139445138 139445204 -13092055 + (TGGG)n Simple_repeat Simple_repeat 4 72 0 7 1648 203 0 0 36 chr5 139446441 139446469 -13090790 + (CCCCCA)n Simple_repeat Simple_repeat 4 30 0 7 1648 383 225 159 48 chr5 139449131 139449257 -13088002 + MTD LTR MaLR 34 173 -246 7 1648 538 163 85 47 chr5 139449251 139449380 -13087879 + MTD LTR MaLR 280 413 -6 7 1648 26 0 0 0 chr5 139452006 139452032 -13085227 + AT_rich Low_complexity Low_complexity 1 26 0 7 1648 23 0 0 0 chr5 139452465 139452488 -13084771 + AT_rich Low_complexity Low_complexity 1 23 0 7 1648 219 244 0 0 chr5 139452533 139452578 -13084681 + GA-rich Low_complexity Low_complexity 4 48 0 7 1648 322 110 13 27 chr5 139452868 139452943 -13084316 + (TTTTTG)n Simple_repeat Simple_repeat 3 76 0 7 1648 21 36 0 0 chr5 139453278 139453306 -13083953 + AT_rich Low_complexity Low_complexity 1 28 0 7 1648 209 167 0 0 chr5 139453380 139453416 -13083843 - MIR SINE MIR -118 144 109 7 1648 641 273 0 20 chr5 139455450 139455603 -13081656 + ID_B1 SINE B4 4 153 -71 7 1648 338 162 106 48 chr5 139457154 139457258 -13080001 + B1F SINE Alu 40 149 0 7 1648 21 0 0 0 chr5 139457636 139457657 -13079602 + AT_rich Low_complexity Low_complexity 1 21 0 7 1648 387 60 0 0 chr5 139458069 139458119 -13079140 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1648 298 280 122 41 chr5 139459195 139459318 -13077941 + B1F SINE Alu 15 147 -2 7 1648 1364 102 3 16 chr5 139459321 139459565 -13077694 + ZP3AR Satellite Satellite 1 240 0 7 1648 192 40 0 0 chr5 139459620 139459645 -13077614 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1648 439 223 68 0 chr5 139460171 139460274 -13076985 + B1F SINE Alu 13 122 -27 7 1649 878 138 168 41 chr5 139461099 139461295 -13075964 + URR1A DNA MER1_type 1 221 -5 7 1649 246 257 85 33 chr5 139461585 139461738 -13075521 + RMER15 LTR ERVL 1 161 -414 7 1649 399 223 245 13 chr5 139461801 139461960 -13075299 + RMER15 LTR ERVL 359 554 -21 7 1649 266 230 0 0 chr5 139462532 139462592 -13074667 + PB1 SINE Alu 76 144 -5 7 1649 910 127 31 19 chr5 139462594 139462755 -13074504 + ZP3AR Satellite Satellite 39 201 -11 7 1649 238 269 103 15 chr5 139462755 139462823 -13074436 + ID4_ SINE ID 1 74 -9 7 1649 182 297 15 15 chr5 139463722 139463787 -13073472 - MIR SINE MIR -79 129 65 7 1649 455 248 0 33 chr5 139465931 139466052 -13071207 + ID_B1 SINE B4 108 224 0 7 1649 483 282 124 30 chr5 139466318 139466519 -13070740 + ID_B1 SINE B4 3 222 -2 7 1649 369 0 0 0 chr5 139466851 139466892 -13070367 + (CA)n Simple_repeat Simple_repeat 2 42 0 7 1649 330 26 0 0 chr5 139466892 139466930 -13070329 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1649 187 220 119 0 chr5 139467158 139467217 -13070042 + MIRm SINE MIR 130 195 -81 7 1649 342 0 0 0 chr5 139467685 139467723 -13069536 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1649 26 0 0 0 chr5 139469179 139469205 -13068054 + GC_rich Low_complexity Low_complexity 1 26 0 7 1649 209 171 0 0 chr5 139470066 139470101 -13067158 + G-rich Low_complexity Low_complexity 2 36 0 7 1649 223 236 7 60 chr5 139471250 139471399 -13065860 + (CCGCG)n Simple_repeat Simple_repeat 4 144 0 7 1649 247 215 12 25 chr5 139471271 139471352 -13065907 + (CGCGG)n Simple_repeat Simple_repeat 3 82 0 7 1649 23 33 0 0 chr5 139471432 139471462 -13065797 + GC_rich Low_complexity Low_complexity 1 30 0 7 1649 208 79 0 50 chr5 139473744 139473784 -13063475 + (CCCCCA)n Simple_repeat Simple_repeat 6 43 0 7 1649 213 39 0 0 chr5 139475689 139475715 -13061544 + (CA)n Simple_repeat Simple_repeat 2 27 0 7 1649 780 258 94 5 chr5 139475755 139475958 -13061301 + ID_B1 SINE B4 1 221 -3 7 1649 396 243 89 45 chr5 139475987 139476099 -13061160 + PB1D10 SINE Alu 1 117 0 7 1649 957 184 34 0 chr5 139476252 139476431 -13060828 - B3 SINE B2 -9 207 23 7 1649 259 325 31 50 chr5 139476441 139476600 -13060659 + Charlie5 DNA MER1_type 2435 2590 -34 7 1649 284 280 0 70 chr5 139476602 139476702 -13060557 + ID_B1 SINE B4 81 173 -51 7 1649 449 236 0 28 chr5 139476618 139476727 -13060532 + PB1D10 SINE Alu 11 116 -1 7 1649 565 219 70 0 chr5 139476770 139476898 -13060361 + B1F SINE Alu 9 145 -4 7 1649 262 328 6 28 chr5 139477235 139477368 -13059891 - L2a LINE L2 -316 3110 2978 7 1649 276 217 24 24 chr5 139478379 139478464 -13058795 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 7 1649 225 206 67 19 chr5 139478531 139478635 -13058624 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 7 1649 267 229 69 46 chr5 139478647 139478734 -13058525 + MT2B LTR ERVL 169 257 -344 7 1649 602 160 0 20 chr5 139478674 139478776 -13058483 + B1_Mur3 SINE Alu 45 144 -5 7 1649 407 217 41 29 chr5 139478795 139478966 -13058293 + (TAGA)n Simple_repeat Simple_repeat 3 175 0 7 1649 496 233 86 82 chr5 139479018 139479238 -13058021 - ID_B1 SINE B4 -2 222 2 7 1649 226 175 0 0 chr5 139479447 139479487 -13057772 + B1F SINE Alu 105 144 -5 7 1649 282 258 15 0 chr5 139479487 139479553 -13057706 + GA-rich Low_complexity Low_complexity 2 68 0 7 1649 1539 81 17 5 chr5 139479723 139480288 -13056971 - ZP3AR Satellite Satellite -21 572 1 7 1649 257 226 0 0 chr5 139480290 139480353 -13056906 - PB1 SINE Alu -1 148 75 7 1649 396 0 0 0 chr5 139480403 139480447 -13056812 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1649 462 225 187 24 chr5 139480448 139480571 -13056688 - RSINE1 SINE B4 -20 145 3 7 1649 621 162 48 0 chr5 139480862 139480967 -13056292 + PB1D7 SINE Alu 1 110 -10 7 1649 299 25 25 0 chr5 139481236 139481276 -13055983 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 1649 656 260 28 23 chr5 139481344 139481521 -13055738 - B4A SINE B4 -58 234 57 8 1649 357 289 0 40 chr5 139482189 139482290 -13054969 + PB1D10 SINE Alu 21 117 0 8 1649 560 315 57 62 chr5 139482319 139482546 -13054713 + B4 SINE B4 67 292 0 8 1649 256 359 0 25 chr5 139483390 139483510 -13053749 + MIR SINE MIR 65 181 -81 8 1649 216 270 12 75 chr5 139483708 139483788 -13053471 - ID4_ SINE ID -8 75 1 8 1649 1055 144 67 0 chr5 139483739 139483940 -13053319 - ZP3AR Satellite Satellite -14 214 1 8 1649 234 160 0 0 chr5 139483944 139483994 -13053265 + T-rich Low_complexity Low_complexity 1 50 0 8 1649 6988 68 4 8 chr5 139483997 139484941 -13052318 - L1Md_F2 LINE L1 0 6582 5643 8 1649 628 268 7 7 chr5 139484975 139485118 -13052141 - B1_Mur2 SINE Alu -5 144 2 8 1649 446 284 22 29 chr5 139485126 139485264 -13051995 - B1F1 SINE Alu 0 149 13 8 1649 267 0 22 44 chr5 139485284 139485329 -13051930 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 8 1649 521 189 18 26 chr5 139485338 139485452 -13051807 - B1_Mur2 SINE Alu -36 113 1 8 1649 273 304 21 97 chr5 139485452 139485533 -13051726 - MT2B LTR ERVL -449 152 86 8 1649 323 267 59 10 chr5 139485708 139485810 -13051449 - MLT1F2 LTR MaLR -11 549 443 8 1649 1813 201 123 0 chr5 139488957 139489330 -13047929 - MTD LTR MaLR 0 419 1 8 1649 232 341 52 15 chr5 139489947 139490081 -13047178 - MIRb SINE MIR -45 223 85 8 1649 229 290 0 68 chr5 139490082 139490093 -13047166 + B4 SINE B4 80 85 -207 8 1649 305 250 164 0 chr5 139490093 139490195 -13047064 + B1F1 SINE Alu 1 116 -1 8 1649 514 248 56 32 chr5 139490215 139490340 -13046919 + B4 SINE B4 93 220 -72 8 1649 791 256 17 0 chr5 139490347 139490523 -13046736 + B4A SINE B4 1 179 -113 8 1649 967 129 13 26 chr5 139490609 139490760 -13046499 - B1_Mur2 SINE Alu 0 149 1 8 1649 273 250 16 0 chr5 139491857 139491921 -13045338 + PB1D9 SINE Alu 48 112 -8 8 1649 698 101 9 0 chr5 139491930 139492039 -13045220 + (GA)n Simple_repeat Simple_repeat 1 110 0 8 1649 678 243 67 11 chr5 139492279 139492415 -13044844 - ZP3AR Satellite Satellite -21 191 44 8 1649 1153 88 0 7 chr5 139492415 139492563 -13044696 - B1_Mus1 SINE Alu 0 148 2 8 1649 678 243 67 11 chr5 139492563 139492605 -13044654 - ZP3AR Satellite Satellite -169 43 3 8 1649 970 148 0 20 chr5 139492699 139492851 -13044408 - B1_Mur3 SINE Alu 0 149 1 8 1649 240 35 0 0 chr5 139492871 139492900 -13044359 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1649 614 244 138 59 chr5 139492938 139493191 -13044068 - B4A SINE B4 -18 274 2 8 1649 598 266 57 6 chr5 139494876 139495035 -13042224 - ID_B1 SINE B4 -2 222 56 8 1649 406 0 37 0 chr5 139495061 139495115 -13042144 + (TG)n Simple_repeat Simple_repeat 2 57 0 8 1649 315 242 30 0 chr5 139495119 139495185 -13042074 - ID4_ SINE ID -13 70 3 8 1649 22 35 0 0 chr5 139495185 139495214 -13042045 + AT_rich Low_complexity Low_complexity 1 29 0 8 1649 305 246 0 14 chr5 139495217 139495291 -13041968 - PB1D10 SINE Alu -5 112 40 8 1649 966 214 5 5 chr5 139495369 139495557 -13041702 + ID_B1 SINE B4 19 206 -18 8 1649 245 273 0 29 chr5 139495560 139495628 -13041631 + MER53 DNA hAT 128 193 0 8 1649 410 271 56 9 chr5 139497012 139497120 -13040139 + PB1D7 SINE Alu 1 113 -7 8 1649 206 178 0 22 chr5 139497131 139497177 -13040082 + A-rich Low_complexity Low_complexity 4 48 0 8 1649 513 174 0 0 chr5 139497185 139497283 -13039976 + GA-rich Low_complexity Low_complexity 3 100 0 8 1649 475 234 162 0 chr5 139497306 139497417 -13039842 + RSINE1 SINE B4 11 139 -26 8 1649 452 228 134 0 chr5 139497465 139497592 -13039667 + B3A SINE B2 2 145 -53 8 1649 207 0 0 0 chr5 139497605 139497628 -13039631 + (CA)n Simple_repeat Simple_repeat 2 24 0 8 1649 207 0 0 0 chr5 139497663 139497686 -13039573 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 8 1649 486 198 36 36 chr5 139497717 139497827 -13039432 + ID_B1 SINE B4 104 213 -11 8 1649 303 28 0 0 chr5 139497827 139497863 -13039396 + (CACAA)n Simple_repeat Simple_repeat 4 39 0 8 1649 321 306 93 0 chr5 139498624 139498732 -13038527 + B4 SINE B4 4 121 -171 8 1649 445 261 170 34 chr5 139498826 139499032 -13038227 + B4 SINE B4 4 237 -55 8 1649 259 246 14 42 chr5 139499189 139499261 -13037998 - ID2 SINE ID -13 70 1 8 1649 291 227 15 0 chr5 139499263 139499329 -13037930 + PB1D10 SINE Alu 28 94 -23 8 1649 414 0 0 0 chr5 139499336 139499382 -13037877 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1649 188 327 18 71 chr5 139499623 139499735 -13037524 + MIR SINE MIR 114 219 -43 8 1649 207 0 0 0 chr5 139500302 139500325 -13036934 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1649 1146 243 39 0 chr5 139500730 139500985 -13036274 - B4A SINE B4 -15 277 13 2 1649 602 190 0 11 chr5 139501693 139501874 -13035385 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1649 798 174 0 13 chr5 139501891 139502376 -13034883 + (CA)n Simple_repeat Simple_repeat 1 478 0 3 1649 225 310 8 25 chr5 139502430 139502549 -13034710 - MER113 DNA MER1_type -84 437 321 4 1649 387 287 37 0 chr5 139503095 139503203 -13034056 - PB1D10 SINE Alu -5 112 1 5 1649 322 279 155 0 chr5 139503275 139503404 -13033855 - B1F SINE Alu 0 149 1 6 1649 198 0 0 0 chr5 139503532 139503554 -13033705 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 7 1649 191 294 14 68 chr5 139504017 139504090 -13033169 - L4 LINE RTE -924 1105 1037 8 1649 212 170 0 19 chr5 139505684 139505738 -13031521 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1649 203 156 0 0 chr5 139505948 139505980 -13031279 + (CTTG)n Simple_repeat Simple_repeat 3 34 0 1 1649 444 264 0 54 chr5 139505983 139506095 -13031164 - PB1 SINE Alu -17 110 5 1 1649 954 240 5 0 chr5 139506992 139507188 -13030071 - ID_B1 SINE B4 -1 223 27 1 1649 304 269 0 0 chr5 139507132 139507199 -13030060 - ID4_ SINE ID -2 81 15 1 1649 235 157 20 0 chr5 139510628 139510679 -13026580 + (CTGGGG)n Simple_repeat Simple_repeat 6 57 0 1 1649 311 336 62 0 chr5 139511335 139511448 -13025811 + PB1D7 SINE Alu 1 120 0 1 1649 690 284 7 0 chr5 139511457 139511612 -13025647 + B4A SINE B4 7 162 -130 1 1649 457 291 0 0 chr5 139511651 139511754 -13025505 - PB1D10 SINE Alu -12 105 3 1 1649 450 0 0 0 chr5 139512107 139512157 -13025102 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1649 543 237 0 0 chr5 139512347 139512524 -13024735 + (TG)n Simple_repeat Simple_repeat 1 177 0 1 1649 543 228 0 0 chr5 139512544 139512724 -13024535 + (TG)n Simple_repeat Simple_repeat 1 180 0 1 1649 294 258 53 61 chr5 139513351 139513483 -13023776 + ID_B1 SINE B4 92 222 -2 2 1649 1552 23 10 0 chr5 139513499 139513809 -13023450 + ZP3AR Satellite Satellite 1 313 -1 2 1649 461 143 52 0 chr5 139513809 139513886 -13023373 + ID4_ SINE ID 1 81 -2 2 1649 216 111 0 0 chr5 139514041 139514077 -13023182 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 1649 303 140 0 0 chr5 139514203 139514253 -13023006 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1649 400 355 40 31 chr5 139514258 139514485 -13022774 - B4A SINE B4 -4 288 60 2 1649 550 207 47 67 chr5 139514530 139514589 -13022670 - B1F SINE Alu -1 148 95 2 1649 1228 242 73 81 chr5 139514589 139514971 -13022288 + MTE2a LTR MaLR 1 379 0 2 1649 550 207 47 67 chr5 139514971 139515061 -13022198 - B1F SINE Alu -55 94 2 2 1649 261 0 0 0 chr5 139515109 139515138 -13022121 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1649 223 208 38 0 chr5 139515549 139515602 -13021657 + CT-rich Low_complexity Low_complexity 1 55 0 2 1649 270 284 86 29 chr5 139515603 139515708 -13021551 - PB1D10 SINE Alu -6 111 1 3 1649 387 250 157 0 chr5 139515735 139515836 -13021423 + B1F SINE Alu 1 118 -31 3 1649 1565 191 48 62 chr5 139515836 139516210 -13021049 + ORR1C1 LTR MaLR 1 369 -9 3 1649 1477 41 15 0 chr5 139516351 139516662 -13020597 + ZP3AR Satellite Satellite 1 315 0 3 1649 244 219 156 0 chr5 139516662 139516726 -13020533 + ID4 SINE ID 1 74 -9 3 1649 506 16 16 0 chr5 139516732 139516795 -13020464 + (TC)n Simple_repeat Simple_repeat 2 65 0 3 1649 624 163 0 0 chr5 139517107 139517279 -13019980 + GA-rich Low_complexity Low_complexity 4 175 0 3 1649 252 0 0 0 chr5 139517401 139517429 -13019830 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 3 1649 312 343 17 28 chr5 139518030 139518210 -13019049 + (TATG)n Simple_repeat Simple_repeat 3 180 0 3 1649 469 296 12 30 chr5 139520087 139520251 -13017008 - HAL1-2a_MD LINE L1 -519 2505 2345 3 1649 348 267 0 32 chr5 139520251 139520344 -13016915 + (TGG)n Simple_repeat Simple_repeat 2 91 0 4 1649 574 220 17 11 chr5 139520346 139520521 -13016738 + (ATGGTG)n Simple_repeat Simple_repeat 4 179 0 4 1649 342 353 0 61 chr5 139520540 139520721 -13016538 - HAL1-2a_MD LINE L1 -517 2507 2338 4 1649 395 242 0 75 chr5 139521204 139521311 -13015948 - B1_Mm SINE Alu -48 99 1 4 1649 443 298 53 0 chr5 139521318 139521449 -13015810 - B1F SINE Alu -1 148 11 4 1649 239 295 26 0 chr5 139522465 139522543 -13014716 + MIRb SINE MIR 110 189 -79 4 1649 701 255 31 63 chr5 139522707 139522929 -13014330 + MTEa LTR MaLR 1 215 -164 4 1649 183 205 0 0 chr5 139522938 139522977 -13014282 + CT-rich Low_complexity Low_complexity 6 44 0 4 1649 655 243 42 32 chr5 139522982 139523185 -13014074 + MTEb LTR MaLR 151 379 0 4 1649 1346 247 37 66 chr5 139523864 139524245 -13013014 + MTE2b LTR MaLR 10 379 0 4 1649 319 286 12 0 chr5 139524845 139524929 -13012330 - PB1D10 SINE Alu -27 90 6 5 1649 685 222 26 7 chr5 139524858 139525012 -13012247 - ID_B1 SINE B4 -67 157 1 5 1649 255 221 110 55 chr5 139526320 139526411 -13010848 - MLT1J LTR MaLR -182 330 235 5 1649 388 252 131 0 chr5 139527957 139528056 -13009203 + PB1D7 SINE Alu 3 114 -6 5 1649 306 203 10 194 chr5 139528451 139528549 -13008710 - ID4_ SINE ID -3 80 1 5 1649 1567 96 6 4 chr5 139528549 139529025 -13008234 - ZP3AR Satellite Satellite -11 476 1 5 1649 336 311 9 36 chr5 139529032 139529142 -13008117 - PB1D10 SINE Alu -9 108 2 5 1649 348 279 115 0 chr5 139530093 139530197 -13007062 + PB1D10 SINE Alu 1 116 -1 5 1649 729 294 13 44 chr5 139530206 139530430 -13006829 + B4 SINE B4 10 226 -66 5 1649 211 350 24 36 chr5 139530430 139530513 -13006746 + B4 SINE B4 2 83 -209 5 1649 248 77 26 0 chr5 139530610 139530649 -13006610 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1649 341 296 0 47 chr5 139530674 139530759 -13006500 + B4 SINE B4 212 292 0 5 1649 329 289 70 90 chr5 139531718 139531926 -13005333 + L1MB3 LINE L1 5742 5949 -234 6 1649 325 321 98 42 chr5 139531946 139532089 -13005170 + B4 SINE B4 56 206 -86 6 1649 802 173 193 11 chr5 139532089 139532270 -13004989 - B3 SINE B2 -2 214 1 6 1649 587 259 102 56 chr5 139532384 139532650 -13004609 + B4 SINE B4 1 278 -14 6 1649 677 272 5 103 chr5 139535040 139535253 -13002006 + ID_B1 SINE B4 2 193 -31 6 1649 689 257 80 65 chr5 139535803 139535976 -13001283 + ID_B1 SINE B4 22 210 -14 6 1649 441 0 0 0 chr5 139535976 139536025 -13001234 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 6 1649 815 138 49 0 chr5 139536025 139536148 -13001111 - B1_Mus1 SINE Alu -18 130 2 6 1649 689 257 80 65 chr5 139536148 139536173 -13001086 + ID_B1 SINE B4 211 223 -1 6 1649 1569 46 0 5 chr5 139537964 139538293 -12998966 + ZP3AR Satellite Satellite 1 327 0 6 1649 239 233 0 64 chr5 139538232 139538310 -12998949 + ID4 SINE ID 1 73 -10 7 1649 672 104 9 28 chr5 139538929 139539038 -12998221 - B1_Mur1 SINE Alu -1 148 42 7 1649 24 0 0 0 chr5 139539039 139539063 -12998196 + GC_rich Low_complexity Low_complexity 1 24 0 7 1649 343 253 13 0 chr5 139539065 139539140 -12998119 - PB1D7 SINE Alu -7 113 38 7 1649 783 206 180 0 chr5 139539525 139539714 -12997545 - ID_B1 SINE B4 0 224 2 7 1649 414 250 0 12 chr5 139539947 139540028 -12997231 + ID4 SINE ID 2 81 -2 7 1649 476 284 35 0 chr5 139540660 139540776 -12996483 + Lx8 LINE L1 7104 7223 -250 7 1649 249 190 34 17 chr5 139540776 139540835 -12996424 + Lx8 LINE L1 7163 7222 -251 7 1649 231 371 0 0 chr5 139540889 139540959 -12996300 + RMER15 LTR ERVL 371 440 -135 7 1649 543 297 13 119 chr5 139541507 139541809 -12995450 - B4A SINE B4 -8 284 15 7 1649 616 267 179 5 chr5 139541812 139542008 -12995251 - B4A SINE B4 -61 231 2 8 1649 922 8 39 0 chr5 139542015 139542142 -12995117 + (TG)n Simple_repeat Simple_repeat 2 133 0 8 1649 326 237 13 2 chr5 139542407 139542492 -12994767 - PB1D7 SINE Alu -44 105 21 8 1649 477 50 0 0 chr5 139543080 139543140 -12994119 + (TC)n Simple_repeat Simple_repeat 1 60 0 8 1649 378 302 4 19 chr5 139543662 139543933 -12993326 + (TGGA)n Simple_repeat Simple_repeat 1 266 0 8 1649 289 298 26 9 chr5 139544111 139544226 -12993033 + (TGGA)n Simple_repeat Simple_repeat 3 119 0 8 1649 1014 47 70 0 chr5 139544297 139544425 -12992834 + B1_Mus1 SINE Alu 2 138 -10 8 1649 203 0 37 0 chr5 139544427 139544454 -12992805 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 8 1649 218 57 57 0 chr5 139544457 139544492 -12992767 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 8 1649 684 105 16 16 chr5 139544531 139544657 -12992602 + (GAAA)n Simple_repeat Simple_repeat 4 129 0 8 1649 531 253 191 0 chr5 139544802 139544964 -12992295 + B4 SINE B4 98 290 -2 8 1649 276 243 0 0 chr5 139544974 139545048 -12992211 + (CA)n Simple_repeat Simple_repeat 1 74 0 9 1649 449 221 302 9 chr5 139546172 139546380 -12990879 + B4A SINE B4 6 274 -18 9 1649 511 164 64 72 chr5 139546495 139546620 -12990639 + MT2B LTR ERVL 1 124 -409 9 1649 1315 96 17 0 chr5 139546622 139546799 -12990460 - B2_Mm2 SINE B2 -14 181 2 9 1649 347 221 0 13 chr5 139546811 139546889 -12990370 + MT2B LTR ERVL 85 161 -372 9 1649 676 273 6 22 chr5 139546883 139547063 -12990196 + MT2B LTR ERVL 384 560 -41 9 1649 336 24 0 0 chr5 139547066 139547107 -12990152 + (GA)n Simple_repeat Simple_repeat 2 42 0 9 1649 29 28 0 0 chr5 139547231 139547267 -12989992 + AT_rich Low_complexity Low_complexity 1 36 0 9 1649 1044 176 28 47 chr5 139547268 139547396 -12989863 + B3 SINE B2 1 127 -89 9 1649 1203 201 149 89 chr5 139547396 139547745 -12989514 - ORR1D1 LTR MaLR -4 370 1 9 1649 1044 176 28 47 chr5 139547745 139547830 -12989429 + B3 SINE B2 128 210 -6 9 1649 368 239 10 10 chr5 139547859 139547958 -12989301 - B1_Mm SINE Alu -2 145 20 9 1649 400 303 27 14 chr5 139547990 139548137 -12989122 + B1F1 SINE Alu 1 149 0 9 1649 1522 60 0 0 chr5 139548142 139548413 -12988846 + ZP3AR Satellite Satellite 1 271 0 1 1649 857 209 60 6 chr5 139549632 139549815 -12987444 + B4 SINE B4 81 273 -19 1 1649 402 186 0 0 chr5 139549815 139549901 -12987358 + (TG)n Simple_repeat Simple_repeat 2 87 0 1 1649 334 306 185 13 chr5 139550058 139550296 -12986963 + L1MC LINE L1 2625 2903 -3243 1 1649 437 229 134 22 chr5 139550304 139550438 -12986821 + B1F SINE Alu 1 149 0 1 1649 442 184 13 0 chr5 139550538 139550614 -12986645 - B1_Mur4 SINE Alu -11 139 63 1 1649 262 250 10 107 chr5 139550614 139550641 -12986618 - ID_B1 SINE B4 -11 213 121 1 1649 390 224 54 36 chr5 139550810 139550921 -12986338 + B1_Mur4 SINE Alu 38 150 0 1 1649 1550 74 8 0 chr5 139550924 139551229 -12986030 + ZP3AR Satellite Satellite 1 307 0 1 1649 282 56 0 0 chr5 139551456 139551492 -12985767 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 1 1649 24 0 0 0 chr5 139551726 139551750 -12985509 + GC_rich Low_complexity Low_complexity 1 24 0 1 1649 1085 252 17 31 chr5 139554616 139554903 -12982356 - B4 SINE B4 -8 284 2 1 1649 417 297 7 42 chr5 139555488 139555588 -12981671 + B4A SINE B4 152 246 -46 1 1649 1664 206 75 11 chr5 139555588 139555936 -12981323 + ORR1D2 LTR MaLR 1 370 0 1 1649 417 297 7 42 chr5 139555936 139555979 -12981280 + B4A SINE B4 247 290 -2 1 1649 1200 48 0 7 chr5 139556030 139556178 -12981081 + B1_Mm SINE Alu 1 147 0 1 1649 798 253 114 106 chr5 139556227 139556425 -12980834 + MTE2a LTR MaLR 1 189 -190 1 1649 201 74 0 0 chr5 139556425 139556452 -12980807 + (CAGG)n Simple_repeat Simple_repeat 4 30 0 1 1649 632 245 117 109 chr5 139556452 139556629 -12980630 + MTE2a LTR MaLR 190 378 -1 1 1649 395 256 25 8 chr5 139556772 139556890 -12980369 - PB1D9 SINE Alu 0 120 1 1 1649 415 257 8 84 chr5 139557115 139557234 -12980025 + PB1D10 SINE Alu 1 110 -7 1 1649 631 261 18 30 chr5 139557242 139557408 -12979851 + RSINE1 SINE B4 1 164 -1 1 1649 486 258 32 24 chr5 139557826 139557949 -12979310 + RSINE1 SINE B4 1 124 -41 1 1649 270 0 0 0 chr5 139557950 139557980 -12979279 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1649 186 43 0 0 chr5 139558099 139558122 -12979137 + (TGGGGG)n Simple_repeat Simple_repeat 4 26 0 1 1649 1081 259 21 58 chr5 139558126 139558417 -12978842 + B4A SINE B4 9 288 -4 1 1649 566 161 9 0 chr5 139558424 139558536 -12978723 + GA-rich Low_complexity Low_complexity 2 114 0 1 1649 192 125 0 0 chr5 139558598 139558630 -12978629 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1649 474 301 27 36 chr5 139558677 139558898 -12978361 - L1M3 LINE L1 -1032 5108 4890 1 1649 220 281 0 17 chr5 139558917 139558975 -12978284 + CT-rich Low_complexity Low_complexity 1 57 0 1 1649 1418 85 8 9 chr5 139558979 139559423 -12977836 - ZP3AR Satellite Satellite -34 443 1 1 1649 195 184 0 0 chr5 139559668 139559706 -12977553 + (CATG)n Simple_repeat Simple_repeat 3 40 0 1 1649 241 244 139 13 chr5 139560472 139560551 -12976708 + PB1D10 SINE Alu 1 89 -28 1 1649 342 249 53 16 chr5 139561026 139561139 -12976120 + MIRb SINE MIR 53 166 -110 1 1649 267 31 0 0 chr5 139561389 139561421 -12975838 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 1 1649 218 224 0 17 chr5 139562080 139562139 -12975120 - PB1D7 SINE Alu -62 58 1 1 1649 588 296 6 47 chr5 139563636 139563806 -12973453 + RSINE1 SINE B4 3 165 0 1 1649 1058 80 0 7 chr5 139563875 139564026 -12973233 + (AGGGGG)n Simple_repeat Simple_repeat 5 154 0 1 1649 477 170 132 18 chr5 139564053 139564167 -12973092 + B1F SINE Alu 21 147 -2 1 1649 859 192 63 15 chr5 139564187 139564393 -12972866 + B3 SINE B2 1 216 0 1 1649 461 297 199 10 chr5 139564569 139564962 -12972297 + RMER5 LTR ERV1 34 500 -34 1 1649 502 209 344 5 chr5 139565043 139565160 -12972099 - B4A SINE B4 -15 277 124 1 1649 360 0 0 0 chr5 139565160 139565200 -12972059 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1649 405 267 45 22 chr5 139565200 139565315 -12971944 - B4A SINE B4 -169 123 3 1 1649 210 71 0 0 chr5 139566362 139566390 -12970869 + (TCCTG)n Simple_repeat Simple_repeat 3 30 0 1 1649 210 280 0 0 chr5 139566497 139566572 -12970687 + CT-rich Low_complexity Low_complexity 2 76 0 1 1649 255 204 0 0 chr5 139566555 139566609 -12970650 + T-rich Low_complexity Low_complexity 1 54 0 1 1649 423 162 45 15 chr5 139566609 139566723 -12970536 - PB1D10 SINE Alu 0 117 8 1 1649 237 325 145 0 chr5 139567140 139567157 -12970102 - B2_Mm2 SINE B2 -3 192 3 1 1649 527 295 60 0 chr5 139567157 139567306 -12969953 - RSINE1 SINE B4 -4 161 4 1 1649 690 122 0 0 chr5 139567472 139567579 -12969680 + (TA)n Simple_repeat Simple_repeat 1 107 0 1 1649 410 313 39 68 chr5 139568072 139568278 -12968981 + HAL1-2a_MD LINE L1 2317 2516 -508 1 1649 565 363 0 0 chr5 139568287 139568466 -12968793 + (CCA)n Simple_repeat Simple_repeat 1 179 0 1 1649 447 269 96 7 chr5 139569043 139569178 -12968081 + B1F2 SINE Alu 1 147 -2 1 1649 216 132 53 0 chr5 139569179 139569217 -12968042 + GA-rich Low_complexity Low_complexity 4 43 0 1 1649 300 167 18 53 chr5 139569319 139569433 -12967826 + (TGGA)n Simple_repeat Simple_repeat 4 113 0 1 1649 972 234 13 67 chr5 139570276 139570514 -12966745 + B4A SINE B4 5 229 -63 1 1649 479 211 88 0 chr5 139570515 139570629 -12966630 + RSINE1 SINE B4 2 125 -40 1 1649 576 97 54 20 chr5 139570663 139570811 -12966448 + (TCTCTG)n Simple_repeat Simple_repeat 2 154 0 1 1649 306 0 0 0 chr5 139570813 139570847 -12966412 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1649 407 118 0 13 chr5 139570929 139571006 -12966253 + (CA)n Simple_repeat Simple_repeat 2 77 0 1 1649 369 0 0 0 chr5 139571310 139571351 -12965908 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1649 1071 222 19 16 chr5 139571707 139571963 -12965296 + RMER15 LTR ERVL 278 534 -41 1 1649 642 203 60 7 chr5 139572905 139573054 -12964205 - MTEa LTR MaLR 0 379 223 1 1649 307 209 33 44 chr5 139573054 139573144 -12964115 + RMER15 LTR ERVL 27 115 -460 1 1649 410 271 33 25 chr5 139573196 139573317 -12963942 + RMER15 LTR ERVL 275 396 -179 1 1649 1219 219 139 6 chr5 139573333 139573677 -12963582 + RMER10B LTR ERVL 9 398 0 1 1649 610 244 61 6 chr5 139573678 139573843 -12963416 + RMER15 LTR ERVL 402 575 0 1 1649 801 189 105 1 chr5 139573843 139574033 -12963226 - MTEa LTR MaLR -154 225 18 1 1649 312 284 15 0 chr5 139574576 139574643 -12962616 + ID4_ SINE ID 1 68 -15 1 1649 180 217 0 0 chr5 139574665 139574711 -12962548 + GA-rich Low_complexity Low_complexity 4 49 0 1 1649 693 169 93 29 chr5 139576100 139576240 -12961019 + B1_Mur3 SINE Alu 1 149 0 1 1649 463 335 24 0 chr5 139576258 139576425 -12960834 + B3A SINE B2 27 197 -1 1 1649 440 234 5 74 chr5 139576444 139576633 -12960626 + (ATGGTG)n Simple_repeat Simple_repeat 4 179 0 1 1649 804 229 177 4 chr5 139577234 139577471 -12959788 - B4 SINE B4 -14 278 1 1 1649 385 304 9 0 chr5 139578235 139578350 -12958909 + PB1D10 SINE Alu 2 117 0 1 1649 395 233 22 0 chr5 139578351 139578441 -12958818 + B4 SINE B4 1 92 -200 1 1649 596 296 113 16 chr5 139578461 139578770 -12958489 + Lx9 LINE L1 7289 7627 -17 1 1649 26 30 0 0 chr5 139578786 139578819 -12958440 + AT_rich Low_complexity Low_complexity 1 33 0 1 1649 825 225 33 11 chr5 139578819 139579003 -12958256 + B4 SINE B4 103 290 -2 1 1649 188 135 0 26 chr5 139579058 139579096 -12958163 + GA-rich Low_complexity Low_complexity 2 38 0 1 1649 183 132 0 0 chr5 139579146 139579165 -12958094 + (T)n Simple_repeat Simple_repeat 1 19 0 1 1649 1238 27 0 0 chr5 139579165 139579311 -12957948 - B1_Mus2 SINE Alu -1 146 1 1 1649 183 132 0 0 chr5 139579311 139579329 -12957930 + (T)n Simple_repeat Simple_repeat 1 18 0 1 1649 712 224 121 38 chr5 139579568 139579832 -12957427 + B4 SINE B4 5 290 -2 1 1649 216 167 0 0 chr5 139579838 139579874 -12957385 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1649 372 191 5 92 chr5 139580210 139580406 -12956853 + (TCTG)n Simple_repeat Simple_repeat 1 179 0 1 1649 225 123 0 110 chr5 139580473 139580637 -12956622 + (TCTG)n Simple_repeat Simple_repeat 2 147 0 1 1649 2285 64 16 0 chr5 139580911 139581225 -12956034 - ORR1A2 LTR MaLR -8 319 1 1 1649 1253 56 78 6 chr5 139581507 139581687 -12955572 - B2_Mm2 SINE B2 -1 194 2 1 1649 983 126 0 0 chr5 139581696 139581839 -12955420 - B1_Mur4 SINE Alu -7 143 1 1 1649 690 328 34 43 chr5 139581997 139582319 -12954940 - ORR1E LTR MaLR -5 354 36 1 1649 507 283 41 14 chr5 139582319 139582466 -12954793 + RSINE1 SINE B4 3 153 -12 1 1649 327 104 0 0 chr5 139582469 139582517 -12954742 + (CATA)n Simple_repeat Simple_repeat 4 51 0 1 1649 237 335 72 44 chr5 139582845 139582884 -12954375 - B2_Mm2 SINE B2 -8 187 2 1 1649 535 338 21 0 chr5 139582884 139583026 -12954233 - RSINE1 SINE B4 -18 147 3 1 1649 26 0 0 0 chr5 139583036 139583062 -12954197 + AT_rich Low_complexity Low_complexity 1 26 0 1 1649 538 154 19 0 chr5 139583287 139583391 -12953868 - ZP3AR Satellite Satellite -63 149 44 1 1649 239 188 41 110 chr5 139583714 139583796 -12953463 - PB1D10 SINE Alu -3 124 33 1 1649 246 235 59 0 chr5 139583933 139584001 -12953258 + L1MB3 LINE L1 6073 6144 -39 1 1649 373 177 86 22 chr5 139584648 139584750 -12952509 + PB1D7 SINE Alu 3 112 -8 1 1649 1527 62 27 1 chr5 139584729 139585168 -12952091 + ZP3AR Satellite Satellite 1 450 -1 1 1649 281 274 0 30 chr5 139586792 139586918 -12950341 - ID4 SINE ID -18 134 17 1 1649 342 281 12 0 chr5 139586890 139586972 -12950287 - ZP3AR Satellite Satellite -126 86 4 1 1649 474 163 0 42 chr5 139586977 139587073 -12950186 - PB1D10 SINE Alu -1 116 25 1 1649 248 291 34 23 chr5 139587610 139587698 -12949561 + ID_B1 SINE B4 133 221 -3 1 1649 298 327 0 38 chr5 139588946 139589051 -12948208 + PB1D10 SINE Alu 5 105 -12 2 1649 1481 48 0 21 chr5 139589051 139589244 -12948015 + B2_Mm1a SINE B2 2 190 -3 2 1649 282 307 51 103 chr5 139589283 139589364 -12947895 + ID_B1 SINE B4 21 103 -121 2 1649 1087 44 7 0 chr5 139589364 139589501 -12947758 - B1_Mus1 SINE Alu -10 138 1 2 1649 282 307 51 103 chr5 139589501 139589633 -12947626 + ID_B1 SINE B4 104 223 -1 2 1649 367 149 23 101 chr5 139589527 139589638 -12947621 + B1_Mur2 SINE Alu 12 149 0 2 1649 668 238 47 60 chr5 139590276 139590507 -12946752 - B4 SINE B4 -1 291 82 2 1649 334 235 6 11 chr5 139590516 139590697 -12946562 + (TA)n Simple_repeat Simple_repeat 1 180 0 2 1649 265 230 77 51 chr5 139590721 139590799 -12946460 - B4 SINE B4 -211 81 2 2 1649 279 0 0 0 chr5 139590814 139590845 -12946414 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2 1649 511 240 103 8 chr5 139590845 139590963 -12946296 - ID_B1 SINE B4 -13 211 81 2 1649 435 327 65 6 chr5 139591231 139591400 -12945859 + B4A SINE B4 36 214 -78 2 1649 315 0 0 0 chr5 139591400 139591435 -12945824 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 2 1649 440 62 16 0 chr5 139591460 139591524 -12945735 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 1650 631 212 67 15 chr5 139591711 139591845 -12945414 - RSINE1 SINE B4 -20 145 5 2 1650 297 273 70 35 chr5 139591852 139591966 -12945293 - L1M4 LINE L1 -572 5606 5489 2 1650 202 213 43 0 chr5 139591966 139592013 -12945246 + C-rich Low_complexity Low_complexity 1 49 0 2 1650 201 29 28 56 chr5 139592015 139592051 -12945208 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1650 764 151 20 14 chr5 139592068 139592216 -12945043 - B1_Mur4 SINE Alu -1 149 1 2 1650 1087 88 0 20 chr5 139592687 139592838 -12944421 + B1_Mur4 SINE Alu 3 150 0 2 1650 648 208 0 0 chr5 139592867 139592987 -12944272 + RSINE1 SINE B4 3 122 -43 2 1650 329 227 53 0 chr5 139593076 139593151 -12944108 - ID2 SINE ID -1 82 4 2 1650 198 171 0 0 chr5 139593806 139593847 -12943412 + (TGAG)n Simple_repeat Simple_repeat 3 43 0 2 1650 231 310 45 22 chr5 139594626 139594715 -12942544 + RLTR47_MM LTR ERV1 74 164 -368 2 1650 528 16 0 0 chr5 139595754 139595815 -12941444 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1650 422 267 0 47 chr5 139595905 139596011 -12941248 - B1F1 SINE Alu -47 102 2 2 1650 538 173 154 0 chr5 139596230 139596340 -12940919 + ZP3AR Satellite Satellite 45 171 -41 2 1650 249 257 216 26 chr5 139596388 139596504 -12940755 + B4 SINE B4 149 286 -6 2 1650 255 276 0 0 chr5 139596577 139596635 -12940624 + B4 SINE B4 28 85 -207 2 1650 361 278 120 0 chr5 139596638 139596746 -12940513 + L1MEf LINE L1 2001 2121 -4079 2 1650 288 216 13 63 chr5 139596870 139596881 -12940378 + B4A SINE B4 78 84 -208 2 1650 478 189 0 31 chr5 139596881 139596979 -12940280 + PB1D10 SINE Alu 1 95 -22 2 1650 427 287 152 16 chr5 139596979 139597155 -12940104 + ID_B1 SINE B4 7 210 -14 2 1650 279 0 0 0 chr5 139597155 139597186 -12940073 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 2 1650 427 287 152 16 chr5 139597186 139597200 -12940059 + ID_B1 SINE B4 211 223 -1 2 1650 347 202 0 12 chr5 139597336 139597421 -12939838 + GA-rich Low_complexity Low_complexity 2 85 0 2 1650 233 277 17 122 chr5 139597537 139597652 -12939607 + MT2B LTR ERVL 155 257 -344 2 1650 594 145 92 17 chr5 139597561 139597680 -12939579 + B1_Mur4 SINE Alu 15 142 -8 2 1650 230 0 33 0 chr5 139597690 139597720 -12939539 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2 1650 738 304 76 92 chr5 139597775 139598302 -12938957 + L1MC LINE L1 2687 3204 -2942 2 1650 890 198 18 32 chr5 139598302 139598521 -12938738 + B3 SINE B2 1 216 0 2 1650 738 304 76 92 chr5 139598521 139598615 -12938644 + L1MC LINE L1 3205 3297 -2849 2 1650 582 227 42 11 chr5 139598618 139598790 -12938469 + B3A SINE B2 1 178 -38 2 1650 302 257 95 26 chr5 139598790 139598906 -12938353 + MTD LTR MaLR 1 124 -295 2 1650 1358 138 0 26 chr5 139598998 139599229 -12938030 - URR1B DNA MER1_type 0 225 1 2 1650 497 227 54 54 chr5 139599246 139599395 -12937864 + B1_Mur1 SINE Alu 1 149 0 2 1650 702 113 0 0 chr5 139599500 139599615 -12937644 + (CA)n Simple_repeat Simple_repeat 1 115 0 2 1650 326 262 35 12 chr5 139599777 139599862 -12937397 + B4A SINE B4 7 93 -199 2 1650 870 140 0 0 chr5 139599865 139600001 -12937258 + B1_Mus2 SINE Alu 2 137 -10 2 1650 216 0 0 0 chr5 139600001 139600025 -12937234 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2 1650 567 193 9 0 chr5 139600084 139600193 -12937066 - PB1D10 SINE Alu -7 110 1 2 1650 905 250 122 8 chr5 139600219 139600473 -12936786 + B4A SINE B4 1 283 -9 2 1650 941 80 72 0 chr5 139600563 139600701 -12936558 + B1_Mur4 SINE Alu 1 148 -2 2 1650 204 40 0 0 chr5 139600702 139600727 -12936532 + (TGGA)n Simple_repeat Simple_repeat 4 28 0 2 1650 849 181 0 0 chr5 139600732 139600909 -12936350 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 2 1650 195 129 0 0 chr5 139600931 139600962 -12936297 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 1650 558 191 102 117 chr5 139600980 139601176 -12936083 + B3A SINE B2 6 198 0 2 1650 546 229 18 0 chr5 139601353 139601462 -12935797 + PB1D10 SINE Alu 1 111 -6 2 1650 642 227 111 21 chr5 139601477 139601666 -12935593 + B3 SINE B2 9 214 -2 2 1650 26 74 0 0 chr5 139601672 139601726 -12935533 + AT_rich Low_complexity Low_complexity 1 54 0 2 1650 839 252 4 53 chr5 139602374 139602600 -12934659 - B3 SINE B2 0 216 2 2 1650 217 350 25 0 chr5 139602698 139602778 -12934481 + PB1D7 SINE Alu 31 112 -8 2 1650 1528 60 0 5 chr5 139603042 139603422 -12933837 - ZP3AR Satellite Satellite -3 378 1 2 1650 395 229 125 37 chr5 139603821 139603957 -12933302 + B1F2 SINE Alu 2 149 0 2 1650 591 327 74 15 chr5 139603973 139604175 -12933084 + ID_B1 SINE B4 7 220 -4 2 1650 868 298 29 14 chr5 139604193 139604455 -12932804 + B4A SINE B4 5 272 -20 2 1650 369 0 0 0 chr5 139604455 139604496 -12932763 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1650 405 0 0 0 chr5 139604496 139604540 -12932719 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1650 868 298 29 14 chr5 139604540 139604552 -12932707 + B4A SINE B4 273 283 -9 2 1650 40 67 0 0 chr5 139605681 139605756 -12931503 + GC_rich Low_complexity Low_complexity 1 75 0 2 1650 706 273 35 15 chr5 139606561 139606762 -12930497 + ID_B1 SINE B4 16 220 -4 2 1650 220 136 33 17 chr5 139606784 139606844 -12930415 + A-rich Low_complexity Low_complexity 4 64 0 2 1650 1110 83 0 0 chr5 139606854 139606998 -12930261 + B1_Mus2 SINE Alu 1 144 -3 2 1650 861 52 0 0 chr5 139606998 139607113 -12930146 + (GAA)n Simple_repeat Simple_repeat 2 116 0 2 1650 221 0 0 33 chr5 139607477 139607507 -12929752 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2 1650 241 311 111 19 chr5 139607508 139607616 -12929643 - B1F SINE Alu -20 129 12 2 1650 409 191 5 56 chr5 139608043 139608140 -12929119 + B4 SINE B4 132 229 -63 2 1650 499 192 48 0 chr5 139608139 139608243 -12929016 + B1_Mur1 SINE Alu 21 129 -20 2 1650 275 269 0 0 chr5 139608893 139608960 -12928299 - B4A SINE B4 -2 290 224 2 1650 459 35 0 0 chr5 139609018 139609075 -12928184 + (TG)n Simple_repeat Simple_repeat 1 57 0 2 1650 455 287 93 0 chr5 139609081 139609231 -12928028 - RSINE1 SINE B4 0 165 2 2 1650 536 261 0 0 chr5 139609233 139609348 -12927911 - PB1D10 SINE Alu 0 117 3 2 1650 1496 72 3 0 chr5 139609701 139610160 -12927099 - ZP3AR Satellite Satellite -25 460 1 2 1650 3076 134 224 28 chr5 139610548 139611164 -12926095 + RMER19A LTR ERVK 1 737 0 2 1650 257 299 0 0 chr5 139611489 139611556 -12925703 + MLT1E3 LTR MaLR 558 624 0 2 1650 475 110 14 0 chr5 139611592 139611665 -12925594 + ZP3AR Satellite Satellite 22 95 -117 2 1650 321 228 12 12 chr5 139611665 139611745 -12925514 + ID4 SINE ID 1 80 -3 2 1650 277 244 141 0 chr5 139612506 139612584 -12924675 + PB1D10 SINE Alu 2 90 -27 2 1650 330 156 0 0 chr5 139612626 139612690 -12924569 + GA-rich Low_complexity Low_complexity 3 66 0 2 1650 261 83 0 0 chr5 139612828 139612864 -12924395 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 1650 510 17 0 0 chr5 139612864 139612922 -12924337 + (GA)n Simple_repeat Simple_repeat 1 59 0 2 1650 440 155 173 10 chr5 139612926 139613030 -12924229 - B3A SINE B2 -47 151 31 2 1650 380 276 71 31 chr5 139613078 139613205 -12924054 + B4 SINE B4 3 134 -158 2 1650 233 215 112 12 chr5 139613386 139613466 -12923793 - B3A SINE B2 -110 88 1 2 1650 654 103 139 80 chr5 139613523 139613660 -12923599 + B1_Mus1 SINE Alu 2 146 -2 2 1650 312 48 0 0 chr5 139613664 139613706 -12923553 + (CAAAC)n Simple_repeat Simple_repeat 4 45 0 2 1650 638 268 19 19 chr5 139613717 139613877 -12923382 + RSINE1 SINE B4 2 161 -4 2 1650 269 257 29 0 chr5 139615012 139615082 -12922177 - Lx8 LINE L1 -249 7224 7153 2 1650 379 335 40 20 chr5 139615080 139615278 -12921981 - Lx8 LINE L1 -256 7217 7016 2 1650 1346 120 131 12 chr5 139615324 139615569 -12921690 + ORR1B2 LTR MaLR 1 274 -93 2 1650 2268 85 0 3 chr5 139615573 139615893 -12921366 - ORR1A2 LTR MaLR -8 319 1 2 1650 556 152 0 0 chr5 139615893 139615992 -12921267 + ORR1B2 LTR MaLR 231 329 0 2 1650 272 271 252 25 chr5 139616298 139616417 -12920842 + RSINE1 SINE B4 8 153 -12 2 1650 478 200 319 7 chr5 139617697 139617838 -12919421 - ID_B1 SINE B4 -38 186 2 2 1650 837 171 7 0 chr5 139617917 139618063 -12919196 + B1_Mus1 SINE Alu 2 148 0 2 1650 38 22 0 0 chr5 139618063 139618108 -12919151 + AT_rich Low_complexity Low_complexity 1 45 0 2 1650 229 250 206 59 chr5 139618177 139618313 -12918946 - L1M3 LINE L1 -2464 3676 3521 2 1650 915 185 32 21 chr5 139618318 139618506 -12918753 + B3 SINE B2 2 191 -25 3 1650 314 243 35 43 chr5 139618596 139618712 -12918547 - PB1D7 SINE Alu -5 115 1 3 1650 387 299 104 0 chr5 139618766 139618910 -12918349 - RSINE1 SINE B4 -4 161 3 3 1650 500 238 55 8 chr5 139619555 139619682 -12917577 + RSINE1 SINE B4 2 134 -31 3 1650 351 0 0 0 chr5 139619688 139619727 -12917532 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1650 557 312 98 25 chr5 139620064 139620389 -12916870 + ORR1E LTR MaLR 3 351 -8 3 1650 238 255 0 0 chr5 139620409 139620456 -12916803 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 3 1650 349 215 63 28 chr5 139620460 139620602 -12916657 + ORR1D2 LTR MaLR 1 189 -1181 3 1650 2496 258 47 61 chr5 139620602 139620948 -12916311 + ORR1D2-int LTR MaLR 297 653 -717 3 1650 874 254 41 0 chr5 139620948 139621145 -12916114 + B3 SINE B2 1 205 -11 3 1650 2496 258 47 61 chr5 139621145 139621569 -12915690 + ORR1D2-int LTR MaLR 654 1056 -314 3 1650 1070 210 45 25 chr5 139621564 139621756 -12915503 + ORR1D2 LTR MaLR 122 322 -48 3 1650 2103 129 85 6 chr5 139621756 139622121 -12915138 + ORR1B1 LTR MaLR 1 394 0 3 1650 1070 210 45 25 chr5 139622121 139622172 -12915087 + ORR1D2 LTR MaLR 323 370 0 3 1650 262 306 32 122 chr5 139622173 139622329 -12914930 - MLT1A LTR MaLR -213 161 20 3 1650 585 320 64 13 chr5 139622371 139622728 -12914531 - L1MDb LINE L1 -4559 2074 1698 3 1650 317 289 87 0 chr5 139622729 139622833 -12914426 + PB1D7 SINE Alu 1 113 -7 3 1650 312 207 0 94 chr5 139622854 139622950 -12914309 + B1_Mur4 SINE Alu 14 100 -50 3 1650 222 37 0 0 chr5 139622954 139622981 -12914278 + (TC)n Simple_repeat Simple_repeat 2 28 0 3 1650 285 29 0 0 chr5 139622981 139623014 -12914245 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 1650 234 289 13 13 chr5 139623064 139623141 -12914118 - L1MDb LINE L1 -4917 1716 1640 3 1650 270 250 122 28 chr5 139623251 139623358 -12913901 - PB1D10 SINE Alu 0 117 1 3 1650 794 315 65 51 chr5 139623373 139623959 -12913300 - L1MDb LINE L1 -5114 1426 833 3 1650 285 232 60 12 chr5 139624792 139624875 -12912384 - MLT1C LTR MaLR -351 116 30 3 1650 23 0 0 0 chr5 139626505 139626528 -12910731 + GC_rich Low_complexity Low_complexity 1 23 0 3 1650 300 279 47 0 chr5 139626897 139626983 -12910276 - B1F1 SINE Alu -48 101 12 3 1650 291 280 0 0 chr5 139628299 139628374 -12908885 + ID4 SINE ID 3 77 -6 3 1650 229 281 0 17 chr5 139630431 139630489 -12906770 - tRNA-Ala-GCG tRNA tRNA -18 57 1 3 1650 870 92 42 84 chr5 139631687 139631710 -12905549 - B2_Mm2 SINE B2 0 195 173 3 1650 556 244 122 22 chr5 139631710 139631890 -12905369 - B3A SINE B2 0 198 1 3 1650 870 92 42 84 chr5 139631890 139631901 -12905358 - B2_Mm2 SINE B2 -23 172 165 3 1650 237 65 0 0 chr5 139631901 139631932 -12905327 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1650 870 92 42 84 chr5 139631932 139632063 -12905196 - B2_Mm2 SINE B2 -31 164 36 3 1650 766 201 41 31 chr5 139632074 139632269 -12904990 - B3A SINE B2 -1 197 1 3 1650 442 282 8 8 chr5 139632355 139632473 -12904786 - RSINE1 SINE B4 -39 126 9 3 1650 3647 108 40 35 chr5 139633869 139634464 -12902795 - MT2B LTR ERVL -3 598 1 3 1650 1265 65 43 0 chr5 139634490 139634674 -12902585 + B2_Mm1t SINE B2 2 193 0 3 1650 272 303 40 0 chr5 139634771 139634847 -12902412 + RSINE1 SINE B4 84 162 -3 3 1650 279 304 49 119 chr5 139634895 139635138 -12902121 - B4 SINE B4 -24 268 43 3 1650 629 253 79 17 chr5 139635261 139635438 -12901821 - ID_B1 SINE B4 -26 198 11 3 1650 217 247 80 27 chr5 139635437 139635512 -12901747 - PB1D10 SINE Alu -10 107 29 3 1650 372 259 46 0 chr5 139635753 139635861 -12901398 + PB1D9 SINE Alu 2 114 -6 3 1650 543 245 60 20 chr5 139636259 139636409 -12900850 + ZP3AR Satellite Satellite 42 197 -15 3 1650 352 224 0 0 chr5 139636412 139636479 -12900780 + ID4_ SINE ID 1 67 -16 3 1650 256 273 130 20 chr5 139636535 139636681 -12900578 + L1M LINE L1 5258 5419 -925 3 1650 1014 90 7 0 chr5 139637164 139637308 -12899951 - B1_Mus1 SINE Alu 0 148 4 3 1650 339 261 43 11 chr5 139637414 139637507 -12899752 - B1F SINE Alu 0 149 54 3 1650 707 331 60 4 chr5 139638245 139638512 -12898747 - B4A SINE B4 -6 286 5 3 1650 1881 163 40 11 chr5 139640045 139640399 -12896860 - ORR1D1 LTR MaLR 0 374 11 3 1650 358 269 69 9 chr5 139640869 139640985 -12896274 - ID_B1 SINE B4 0 224 102 3 1650 748 252 115 67 chr5 139640988 139641345 -12895914 - RMER10A LTR ERVL 0 442 69 3 1650 663 115 203 8 chr5 139641430 139641553 -12895706 - B1_Mus1 SINE Alu 0 148 2 3 1650 230 0 0 32 chr5 139641652 139641683 -12895576 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 3 1650 526 193 62 0 chr5 139641683 139641805 -12895454 - B1_Mus1 SINE Alu -13 137 4 3 1650 22 0 0 0 chr5 139642487 139642509 -12894750 + AT_rich Low_complexity Low_complexity 1 22 0 3 1650 235 293 67 0 chr5 139642526 139642601 -12894658 - PB1 SINE Alu 0 127 48 3 1650 279 325 12 35 chr5 139642593 139642679 -12894580 + B4A SINE B4 209 292 0 3 1650 396 276 171 0 chr5 139643336 139643488 -12893771 - B3A SINE B2 -16 182 5 3 1650 800 142 67 0 chr5 139643537 139643671 -12893588 - B1_Mur3 SINE Alu -6 143 1 3 1650 276 212 30 0 chr5 139643675 139643741 -12893518 - PB1D10 SINE Alu 0 117 50 3 1650 381 230 0 0 chr5 139643783 139643909 -12893350 + (TG)n Simple_repeat Simple_repeat 2 127 0 3 1650 327 49 0 0 chr5 139643987 139644028 -12893231 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1650 1308 53 0 0 chr5 139644097 139644266 -12892993 + B2_Mm2 SINE B2 1 169 -26 3 1650 375 243 15 12 chr5 139644275 139644386 -12892873 - B3A SINE B2 -85 110 2 3 1650 542 238 54 83 chr5 139644408 139644582 -12892677 - B4 SINE B4 -87 205 34 3 1650 679 199 14 7 chr5 139645012 139645159 -12892100 + B1_Mur4 SINE Alu 1 148 -2 3 1650 1264 41 87 0 chr5 139645168 139645340 -12891919 + B2_Mm2 SINE B2 2 188 -7 3 1650 259 205 60 0 chr5 139645346 139645463 -12891796 + ORR1B1-int LTR MaLR 631 754 -755 3 1650 1080 37 0 0 chr5 139645362 139645498 -12891761 + B1_Mus2 SINE Alu 7 142 -5 3 1650 279 0 0 0 chr5 139645501 139645532 -12891727 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3 1650 491 301 42 0 chr5 139645545 139645688 -12891571 + RSINE1 SINE B4 2 150 -15 3 1650 388 232 195 23 chr5 139645782 139645910 -12891349 + ID_B1 SINE B4 73 222 -2 3 1650 980 69 26 40 chr5 139645915 139646066 -12891193 - B1_Mur4 SINE Alu 0 150 2 3 1650 311 285 53 2 chr5 139646333 139646442 -12890817 - B1F SINE Alu -2 125 3 3 1650 865 329 14 31 chr5 139646807 139647099 -12890160 + B4A SINE B4 2 288 -4 3 1650 569 319 26 5 chr5 139647684 139647879 -12889380 - ID_B1 SINE B4 0 224 26 3 1650 273 57 0 0 chr5 139648740 139648775 -12888484 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 1650 603 225 29 0 chr5 139648777 139648915 -12888344 - B1_Mur2 SINE Alu 0 149 8 3 1650 591 254 0 14 chr5 139648919 139649059 -12888200 + B4 SINE B4 109 246 -46 3 1650 513 265 62 46 chr5 139649122 139649316 -12887943 + B3A SINE B2 1 197 -1 3 1650 634 133 206 42 chr5 139649321 139649486 -12887773 - B2_Mm2 SINE B2 -3 192 1 3 1650 27 0 0 0 chr5 139649492 139649519 -12887740 + AT_rich Low_complexity Low_complexity 1 27 0 3 1650 1164 48 0 0 chr5 139649531 139649677 -12887582 + B1_Mm SINE Alu 2 147 0 3 1650 264 122 0 0 chr5 139649677 139649718 -12887541 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 3 1650 946 62 23 0 chr5 139649723 139649852 -12887407 + B2_Mm2 SINE B2 1 132 -63 3 1650 279 0 0 0 chr5 139650715 139650746 -12886513 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1650 225 0 0 0 chr5 139650779 139650804 -12886455 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1650 393 22 0 0 chr5 139650839 139650885 -12886374 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1650 1403 188 159 27 chr5 139651532 139651904 -12885355 - MTC LTR MaLR 0 421 1 3 1650 665 224 30 7 chr5 139652251 139652386 -12884873 + RSINE1 SINE B4 17 154 -11 3 1650 566 252 8 8 chr5 139652443 139652571 -12884688 + ID_B1 SINE B4 2 129 -95 3 1650 226 108 0 26 chr5 139652564 139652602 -12884657 + PB1D10 SINE Alu 9 45 -72 3 1650 212 132 0 26 chr5 139652600 139652639 -12884620 + ID_B1 SINE B4 92 129 -95 3 1650 247 100 0 24 chr5 139652666 139652707 -12884552 + ID_B1 SINE B4 90 129 -95 3 1650 212 132 0 26 chr5 139652702 139652741 -12884518 + ID_B1 SINE B4 92 129 -95 3 1650 214 108 27 0 chr5 139652736 139652773 -12884486 + ID_B1 SINE B4 92 129 -95 3 1650 587 207 20 40 chr5 139652766 139652910 -12884349 + PB1D10 SINE Alu 9 148 -1 3 1650 617 244 164 16 chr5 139652929 139653112 -12884147 + ID_B1 SINE B4 2 211 -13 3 1650 409 215 200 36 chr5 139653326 139653466 -12883793 - B3A SINE B2 -35 163 1 3 1650 919 104 14 20 chr5 139653489 139653636 -12883623 - B1_Mur3 SINE Alu -2 147 2 3 1650 438 233 65 0 chr5 139654209 139654366 -12882893 - MTE2a LTR MaLR 0 379 201 3 1650 285 227 220 113 chr5 139654321 139654480 -12882779 + B4A SINE B4 53 228 -64 3 1650 603 178 130 5 chr5 139654486 139654641 -12882618 + B3A SINE B2 3 169 -26 3 1650 492 312 14 14 chr5 139655703 139655849 -12881410 - ZP3AR Satellite Satellite -21 191 46 3 1650 366 220 89 10 chr5 139655864 139655965 -12881294 - B1F1 SINE Alu -8 141 33 3 1650 216 0 0 0 chr5 139656141 139656165 -12881094 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1650 1151 172 97 22 chr5 139656210 139656478 -12880781 + MTC LTR MaLR 1 288 -133 3 1650 235 143 155 113 chr5 139656738 139656809 -12880450 - B1_Mur4 SINE Alu -56 94 21 3 1650 736 101 62 0 chr5 139656889 139657018 -12880241 + B1_Mus2 SINE Alu 10 146 -1 3 1650 419 303 51 26 chr5 139657043 139657199 -12880060 + RSINE1 SINE B4 3 162 -3 3 1650 504 117 0 0 chr5 139657550 139657627 -12879632 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1650 243 0 0 0 chr5 139657876 139657903 -12879356 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1650 340 254 40 80 chr5 139658338 139658488 -12878771 + ID_B1 SINE B4 80 223 -1 4 1650 446 227 52 52 chr5 139658355 139658490 -12878769 + B1F1 SINE Alu 15 149 0 4 1650 398 234 53 18 chr5 139658491 139658604 -12878655 + PB1D10 SINE Alu 1 117 0 4 1650 589 236 16 8 chr5 139658612 139658740 -12878519 + B1_Mur1 SINE Alu 2 130 -19 4 1650 1068 81 0 0 chr5 139658744 139658892 -12878367 - B1_Mus1 SINE Alu 0 148 1 4 1650 987 124 0 0 chr5 139659985 139660122 -12877137 + B1_Mus1 SINE Alu 1 137 -11 4 1650 640 194 154 39 chr5 139660731 139660913 -12876346 - B3 SINE B2 -13 203 1 4 1650 396 0 0 0 chr5 139660929 139660973 -12876286 + (CA)n Simple_repeat Simple_repeat 2 45 0 4 1650 561 259 30 0 chr5 139661204 139661335 -12875924 + RSINE1 SINE B4 1 135 -30 4 1650 483 18 0 0 chr5 139661752 139661808 -12875451 + (CA)n Simple_repeat Simple_repeat 2 57 0 4 1650 408 252 9 9 chr5 139662032 139662144 -12875115 - PB1D9 SINE Alu -8 112 1 4 1650 592 259 42 0 chr5 139662879 139663022 -12874237 - RSINE1 SINE B4 -13 152 4 4 1650 196 209 23 0 chr5 139663481 139663524 -12873735 + MER5A DNA MER1_type 28 71 -118 4 1650 669 138 131 0 chr5 139663704 139663834 -12873425 - B1_Mus1 SINE Alu -1 147 1 4 1650 341 209 0 0 chr5 139664037 139664104 -12873155 + RSINE1 SINE B4 63 129 -36 4 1650 1031 88 0 20 chr5 139664179 139664329 -12872930 + B1_Mus1 SINE Alu 2 148 0 4 1650 432 281 26 9 chr5 139664428 139664543 -12872716 + RSINE1 SINE B4 3 119 -46 4 1650 288 0 0 0 chr5 139664552 139664584 -12872675 + (CA)n Simple_repeat Simple_repeat 1 32 0 4 1650 609 203 177 21 chr5 139664592 139664778 -12872481 + B3 SINE B2 1 215 -1 4 1650 1074 43 0 0 chr5 139664782 139664920 -12872339 + B1_Mm SINE Alu 10 147 0 4 1650 216 0 0 0 chr5 139664920 139664944 -12872315 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1650 198 103 0 0 chr5 139664942 139664971 -12872288 + (TAA)n Simple_repeat Simple_repeat 2 30 0 4 1650 1146 68 0 0 chr5 139664979 139665127 -12872132 + B1_Mus1 SINE Alu 1 148 0 4 1650 1368 81 15 7 chr5 139665136 139665403 -12871856 + ZP3AR Satellite Satellite 1 269 -2 4 1650 239 345 0 89 chr5 139665349 139665446 -12871813 + BC1_Mm scRNA scRNA 2 88 -64 4 1650 348 309 16 31 chr5 139665446 139665573 -12871686 + PB1 SINE Alu 1 125 -2 4 1650 239 345 0 89 chr5 139665573 139665599 -12871660 + BC1_Mm scRNA scRNA 89 114 -38 4 1650 573 88 0 0 chr5 139665606 139665686 -12871573 + (GAA)n Simple_repeat Simple_repeat 1 80 0 4 1650 701 102 9 0 chr5 139665695 139665803 -12871456 + (GGAA)n Simple_repeat Simple_repeat 1 109 0 4 1650 277 212 30 0 chr5 139665812 139665878 -12871381 + ID4_ SINE ID 2 69 -14 4 1650 756 277 40 26 chr5 139665896 139666122 -12871137 + B4A SINE B4 4 232 -60 4 1650 621 274 23 0 chr5 139666123 139666298 -12870961 + B3A SINE B2 2 180 -18 4 1650 32 43 0 0 chr5 139666307 139666353 -12870906 + AT_rich Low_complexity Low_complexity 1 46 0 4 1650 854 143 7 20 chr5 139666362 139666512 -12870747 + B1_Mur4 SINE Alu 1 148 -2 4 1650 889 127 14 40 chr5 139666538 139666686 -12870573 + B1_Mur4 SINE Alu 5 148 -2 4 1650 212 339 0 0 chr5 139666749 139666808 -12870451 + (CACG)n Simple_repeat Simple_repeat 4 62 0 4 1650 306 312 12 59 chr5 139666836 139667006 -12870253 + L1MC4a LINE L1 7703 7864 -18 4 1650 405 0 0 0 chr5 139667320 139667365 -12869894 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 4 1650 551 240 78 0 chr5 139667365 139667494 -12869765 - B1_Mur2 SINE Alu -7 142 4 4 1650 381 75 0 0 chr5 139667640 139667693 -12869566 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1650 939 49 65 0 chr5 139667695 139667818 -12869441 - B1_Mus2 SINE Alu 0 147 17 4 1650 323 339 113 48 chr5 139667903 139668132 -12869127 + B4 SINE B4 12 255 -37 4 1650 508 268 112 7 chr5 139668161 139668304 -12868955 + RSINE1 SINE B4 2 159 -6 4 1650 1110 49 35 0 chr5 139668514 139668656 -12868603 - B1_Mus2 SINE Alu 0 147 1 4 1650 842 231 113 0 chr5 139668657 139668852 -12868407 - ID_B1 SINE B4 0 224 8 4 1650 766 163 41 75 chr5 139668877 139669023 -12868236 - B1_Mur2 SINE Alu -8 141 1 4 1650 419 255 54 9 chr5 139669979 139670090 -12867169 + PB1D10 SINE Alu 1 116 -1 4 1650 1578 55 0 0 chr5 139670156 139670449 -12866810 + (TTCC)n Simple_repeat Simple_repeat 1 293 0 4 1650 197 33 33 0 chr5 139670459 139670489 -12866770 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1650 1075 89 7 0 chr5 139670495 139670641 -12866618 - B1_Mus1 SINE Alu -1 147 1 4 1650 930 221 34 6 chr5 139670665 139670842 -12866417 + B3 SINE B2 1 182 -34 4 1650 649 274 18 48 chr5 139670823 139670988 -12866271 - RSINE1 SINE B4 -3 162 3 4 1650 307 105 17 17 chr5 139670988 139671046 -12866213 + (TC)n Simple_repeat Simple_repeat 1 58 0 4 1650 391 255 75 0 chr5 139671052 139671146 -12866113 - B1F1 SINE Alu -47 102 2 4 1650 340 328 43 21 chr5 139671146 139671193 -12866066 - ID SINE ID -138 86 37 4 1650 897 239 75 0 chr5 139671665 139671853 -12865406 - B3 SINE B2 -13 203 2 4 1650 22 80 0 0 chr5 139671860 139671910 -12865349 + AT_rich Low_complexity Low_complexity 1 50 0 4 1650 1182 97 3 0 chr5 139672043 139672377 -12864882 + (TG)n Simple_repeat Simple_repeat 1 335 0 4 1650 471 137 24 0 chr5 139672402 139672526 -12864733 + (TG)n Simple_repeat Simple_repeat 2 128 0 4 1650 300 24 49 0 chr5 139672548 139672589 -12864670 - HAL1-3A_ME LINE L1 -843 2015 1973 4 1650 515 212 26 9 chr5 139672599 139672713 -12864546 - PB1D9 SINE Alu -2 118 3 4 1650 218 258 132 29 chr5 139672859 139672927 -12864332 + ID4 SINE ID 1 75 -8 4 1650 237 175 18 0 chr5 139673469 139673526 -12863733 + A-rich Low_complexity Low_complexity 2 59 0 4 1650 866 261 15 5 chr5 139673531 139673735 -12863524 + ID_B1 SINE B4 19 224 0 4 1650 198 306 0 0 chr5 139673936 139673985 -12863274 - L3 LINE CR1 -2274 2215 2167 4 1650 745 68 87 0 chr5 139674032 139674135 -12863124 - B1_Mus1 SINE Alu 0 148 37 4 1650 1226 41 7 0 chr5 139674157 139674302 -12862957 - B1_Mus2 SINE Alu 0 147 2 4 1650 476 192 57 57 chr5 139674361 139674449 -12862810 + B1_Mus2 SINE Alu 44 137 -12 4 1650 249 33 0 0 chr5 139674449 139674479 -12862780 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 4 1650 921 218 64 0 chr5 139674481 139674683 -12862576 + B3 SINE B2 2 216 0 4 1650 459 192 57 57 chr5 139674683 139674696 -12862563 + B1_Mur2 SINE Alu 138 148 -1 4 1650 266 257 89 89 chr5 139674988 139675052 -12862207 + B4A SINE B4 25 88 -204 4 1650 225 227 216 0 chr5 139675052 139675140 -12862119 + PB1D9 SINE Alu 1 107 -13 4 1650 1159 263 24 27 chr5 139675135 139675428 -12861831 - B4 SINE B4 0 292 1 4 1650 370 243 118 27 chr5 139675454 139675564 -12861695 + PB1D9 SINE Alu 1 120 0 4 1650 27 0 0 0 chr5 139675564 139675591 -12861668 + AT_rich Low_complexity Low_complexity 1 27 0 4 1650 480 240 240 0 chr5 139675602 139675748 -12861511 + B3A SINE B2 2 182 -16 4 1650 242 291 63 71 chr5 139675804 139675930 -12861329 + B4A SINE B4 80 204 -88 4 1650 434 297 0 14 chr5 139675825 139675950 -12861309 + B1F1 SINE Alu 12 129 -19 4 1650 644 184 58 22 chr5 139675955 139676094 -12861165 + B1_Mur2 SINE Alu 5 148 -1 4 1650 198 0 0 0 chr5 139676181 139676203 -12861056 + (CAGGG)n Simple_repeat Simple_repeat 5 26 0 4 1650 22 0 0 0 chr5 139676822 139676844 -12860415 + GC_rich Low_complexity Low_complexity 1 22 0 4 1650 242 303 116 66 chr5 139677354 139677378 -12859881 - B4 SINE B4 -34 258 181 4 1650 534 200 88 51 chr5 139677378 139677515 -12859744 - B1_Mur2 SINE Alu -1 148 7 4 1650 242 303 116 66 chr5 139677515 139677552 -12859707 - B4 SINE B4 -34 180 51 4 1650 541 283 8 0 chr5 139677520 139677640 -12859619 - ID_B1 SINE B4 -8 216 96 4 1650 673 126 235 0 chr5 139677740 139677859 -12859400 - B1_Mus1 SINE Alu -1 147 1 4 1650 221 245 0 0 chr5 139678050 139678099 -12859160 - ID_B1 SINE B4 -90 134 86 4 1650 223 154 0 0 chr5 139678233 139678272 -12858987 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 4 1650 275 260 14 0 chr5 139678291 139678364 -12858895 - L1MB5 LINE L1 -80 6094 6021 4 1650 286 253 0 25 chr5 139678434 139678526 -12858733 - L1MB5 LINE L1 -322 5862 5773 4 1650 417 281 68 26 chr5 139678570 139678687 -12858572 - RSINE1 SINE B4 -40 125 4 4 1650 284 120 40 0 chr5 139678720 139678770 -12858489 - L1M4 LINE L1 -462 5712 5661 4 1650 369 0 0 0 chr5 139678770 139678811 -12858448 + (TG)n Simple_repeat Simple_repeat 1 41 0 4 1650 295 246 0 0 chr5 139678825 139678886 -12858373 - B4A SINE B4 -18 274 214 4 1650 713 176 45 15 chr5 139678907 139679040 -12858219 - B1_Mus1 SINE Alu 0 148 12 4 1650 326 224 43 86 chr5 139678966 139679059 -12858200 - MT2B2 LTR ERVL -344 240 152 4 1650 186 43 0 0 chr5 139679090 139679113 -12858146 + (T)n Simple_repeat Simple_repeat 1 23 0 4 1650 1162 82 7 0 chr5 139679113 139679259 -12858000 - B1_Mus1 SINE Alu 0 148 2 4 1650 862 265 55 24 chr5 139679308 139679637 -12857622 - L1MB5 LINE L1 -499 5675 5337 4 1650 466 236 34 0 chr5 139679670 139679759 -12857500 - B1_Mur2 SINE Alu -56 93 2 4 1650 396 297 10 19 chr5 139679866 139679969 -12857290 - PB1D10 SINE Alu -5 112 11 4 1650 398 234 81 47 chr5 139679994 139680142 -12857117 - RSINE1 SINE B4 -8 157 5 4 1650 561 218 18 0 chr5 139680179 139680289 -12856970 - B1_Mur4 SINE Alu -1 149 38 4 1650 354 312 219 20 chr5 139680344 139681138 -12856121 - L1MB5 LINE L1 -1068 5078 4127 4 1650 330 276 187 0 chr5 139681268 139681391 -12855868 - ID_B1 SINE B4 -73 151 6 5 1650 556 245 19 37 chr5 139681796 139681957 -12855302 - RSINE1 SINE B4 -7 158 1 5 1650 26 0 0 0 chr5 139682879 139682905 -12854354 + AT_rich Low_complexity Low_complexity 1 26 0 5 1650 327 318 75 8 chr5 139682909 139683042 -12854217 - B1F1 SINE Alu -7 142 1 5 1650 750 217 21 0 chr5 139683075 139683218 -12854041 - B1_Mur1 SINE Alu -3 146 1 5 1650 234 0 0 0 chr5 139683238 139683264 -12853995 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5 1650 354 269 54 27 chr5 139683264 139683364 -12853895 - PB1D7 SINE Alu -13 107 3 5 1650 269 246 13 76 chr5 139683427 139683506 -12853753 - PB1D10 SINE Alu -2 115 42 5 1650 207 0 0 0 chr5 139684571 139684594 -12852665 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5 1650 1232 61 0 0 chr5 139684597 139684745 -12852514 - B1_Mus1 SINE Alu 0 148 1 5 1650 225 254 158 35 chr5 139685116 139685230 -12852029 - RLTR4_Mm LTR ERV1 -302 440 313 5 1650 428 324 82 14 chr5 139685712 139685859 -12851400 - RSINE1 SINE B4 -7 158 2 5 1650 306 278 67 67 chr5 139685999 139686103 -12851156 - PB1D10 SINE Alu -2 115 12 5 1650 2810 99 85 54 chr5 139687267 139687728 -12849531 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1650 300 291 0 60 chr5 139688332 139688416 -12848843 - PB1D10 SINE Alu -29 88 10 5 1650 1578 47 11 0 chr5 139688467 139688657 -12848602 - B2_Mm1a SINE B2 0 193 2 5 1650 869 240 61 30 chr5 139688715 139688913 -12848346 + B3 SINE B2 3 206 -10 5 1650 472 135 325 26 chr5 139688962 139689076 -12848183 + B1_Mus1 SINE Alu 1 148 0 5 1650 284 296 101 9 chr5 139689178 139689287 -12847972 - PB1D7 SINE Alu -1 119 1 5 1650 345 269 74 21 chr5 139689354 139689449 -12847810 - PB1D7 SINE Alu -12 108 9 5 1650 261 0 0 0 chr5 139689518 139689547 -12847712 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 5 1650 197 33 0 32 chr5 139689559 139689590 -12847669 + (TTG)n Simple_repeat Simple_repeat 1 30 0 5 1650 1047 75 13 33 chr5 139689615 139689766 -12847493 - B1_Mus1 SINE Alu 0 148 1 5 1650 583 137 110 97 chr5 139690107 139690252 -12847007 + B1_Mur2 SINE Alu 2 148 -1 5 1650 183 156 0 0 chr5 139690272 139690304 -12846955 + GA-rich Low_complexity Low_complexity 1 32 0 5 1650 847 194 7 0 chr5 139690312 139690451 -12846808 + B1_Mur3 SINE Alu 1 140 -9 5 1650 476 224 32 9 chr5 139690552 139690662 -12846597 - PB1D7 SINE Alu -16 133 27 5 1650 230 291 83 55 chr5 139690789 139690898 -12846361 - PB1D10 SINE Alu -5 112 1 5 1650 338 321 73 0 chr5 139690898 139690952 -12846307 - B4A SINE B4 -201 91 28 5 1650 510 125 0 0 chr5 139691760 139691840 -12845419 + (TG)n Simple_repeat Simple_repeat 1 80 0 5 1650 439 272 128 61 chr5 139691846 139692042 -12845217 - B4A SINE B4 0 292 84 5 1650 474 231 162 0 chr5 139693179 139693296 -12843963 + B1_Mur2 SINE Alu 5 140 -9 5 1650 528 111 0 0 chr5 139693296 139693377 -12843882 + (CATA)n Simple_repeat Simple_repeat 2 82 0 5 1650 360 239 34 220 chr5 139693377 139693436 -12843823 + B1F SINE Alu 106 148 -1 5 1650 180 0 0 0 chr5 139693689 139693709 -12843550 + (T)n Simple_repeat Simple_repeat 1 20 0 5 1650 3582 18 2 0 chr5 139693736 139694131 -12843128 - MTA_Mm LTR MaLR 0 396 1 5 1650 9253 33 6 1 chr5 139694131 139695224 -12842035 - MTA_Mm-int LTR MaLR 0 1098 1 5 1650 3582 18 2 0 chr5 139695224 139695619 -12841640 - MTA_Mm LTR MaLR 0 396 1 5 1650 591 135 0 0 chr5 139695655 139695751 -12841508 + (CA)n Simple_repeat Simple_repeat 2 97 0 5 1650 936 69 0 0 chr5 139695770 139695886 -12841373 - B1_Mm SINE Alu -31 116 1 5 1650 545 249 232 0 chr5 139695886 139696069 -12841190 - B4A SINE B4 -63 229 4 5 1650 220 233 148 16 chr5 139696844 139696905 -12840354 + B1_Mm SINE Alu 35 103 -44 5 1650 426 301 9 26 chr5 139696921 139697037 -12840222 + RSINE1 SINE B4 16 129 -36 5 1650 657 179 0 0 chr5 139698174 139698286 -12838973 - ORR1C2 LTR MaLR -3 381 270 5 1650 580 185 28 0 chr5 139698275 139698383 -12838876 - ORR1C2 LTR MaLR -267 111 1 5 1650 529 224 26 8 chr5 139700598 139700715 -12836544 - PB1D9 SINE Alu -1 119 1 5 1650 317 293 12 74 chr5 139701691 139701853 -12835406 - YREP_Mm Unknown Unknown -1480 332 181 5 1650 734 246 9 22 chr5 139701714 139701890 -12835369 + ID_B1 SINE B4 81 248 -44 5 1650 473 254 100 100 chr5 139702081 139702154 -12835105 + B4 SINE B4 16 223 -67 5 1650 895 141 0 0 chr5 139702154 139702289 -12834970 + B1_Mur4 SINE Alu 14 148 -2 5 1650 294 282 28 0 chr5 139702909 139702980 -12834279 + ID SINE ID 2 74 -150 5 1650 1430 80 5 0 chr5 139704117 139704304 -12832955 + B2_Mm1t SINE B2 2 189 -4 5 1650 292 279 25 0 chr5 139704384 139704463 -12832796 - ID4 SINE ID -2 81 1 5 1650 590 215 186 88 chr5 139704723 139704917 -12832342 - B3 SINE B2 0 216 4 5 1650 306 0 0 0 chr5 139705161 139705195 -12832064 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5 1650 1034 109 15 0 chr5 139705195 139705332 -12831927 - B1_Mur4 SINE Alu -10 140 2 5 1650 218 191 0 0 chr5 139706145 139706187 -12831072 - RSINE1 SINE B4 -38 127 86 5 1650 822 289 21 0 chr5 139706227 139706421 -12830838 + B3A SINE B2 1 198 0 5 1650 1217 106 56 0 chr5 139707306 139707486 -12829773 + B2_Mm2 SINE B2 1 190 -5 5 1650 401 290 11 0 chr5 139707524 139707617 -12829642 + B1F1 SINE Alu 1 94 -55 5 1650 1177 137 16 0 chr5 139707683 139707866 -12829393 - B2_Mm2 SINE B2 -7 188 3 5 1650 207 0 0 0 chr5 139707982 139708005 -12829254 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1650 1309 72 11 32 chr5 139708008 139708195 -12829064 - B2_Mm2 SINE B2 -8 187 5 5 1650 915 126 0 22 chr5 139708304 139708442 -12828817 + B1_Mus1 SINE Alu 1 135 -13 5 1650 891 138 43 0 chr5 139708713 139708851 -12828408 - B1_Mus1 SINE Alu 0 148 5 5 1650 644 213 41 62 chr5 139708994 139709139 -12828120 + B1_Mur2 SINE Alu 1 142 -7 5 1650 212 146 179 18 chr5 139709236 139709292 -12827967 + B1_Mm SINE Alu 61 125 -22 5 1650 434 203 54 51 chr5 139710889 139711001 -12826258 - PB1D9 SINE Alu -4 116 5 5 1650 247 264 14 14 chr5 139711024 139711097 -12826162 + (TA)n Simple_repeat Simple_repeat 1 73 0 5 1650 1181 62 0 20 chr5 139711207 139711355 -12825904 + B1_Mus2 SINE Alu 1 145 -2 5 1650 255 208 14 65 chr5 139712023 139712096 -12825163 - ID4 SINE ID -56 96 27 5 1650 225 119 0 0 chr5 139712710 139712752 -12824507 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1650 388 281 10 30 chr5 139712862 139712961 -12824298 - B4A SINE B4 -149 143 47 5 1650 313 254 16 0 chr5 139713030 139713093 -12824166 - RSINE1 SINE B4 -99 66 3 5 1650 237 260 79 85 chr5 139713738 139713902 -12823357 - RLTR30 LTR ERV1 -21 358 196 5 1650 231 242 227 21 chr5 139715180 139715277 -12821982 - B3 SINE B2 -98 118 2 5 1650 378 0 0 0 chr5 139715308 139715350 -12821909 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1650 675 91 116 18 chr5 139715394 139715506 -12821753 + B1_Mus1 SINE Alu 15 137 -11 5 1650 537 254 9 0 chr5 139715533 139715643 -12821616 - RSINE1 SINE B4 -37 128 18 5 1650 318 330 0 89 chr5 139715677 139715694 -12821565 + MT2B LTR ERVL 146 151 -450 5 1650 796 138 0 55 chr5 139715694 139715843 -12821416 + B1_Mur4 SINE Alu 1 138 -9 5 1650 755 185 8 0 chr5 139718077 139718207 -12819052 - B1_Mus1 SINE Alu -16 132 2 5 1650 1441 81 0 5 chr5 139718610 139718797 -12818462 - B2_Mm2 SINE B2 -8 187 2 5 1650 1285 41 0 0 chr5 139718838 139718985 -12818274 - B1_Mus1 SINE Alu -1 147 1 5 1650 728 254 69 15 chr5 139719772 139719976 -12817283 - B3 SINE B2 0 216 2 5 1650 791 219 122 11 chr5 139720456 139720636 -12816623 - B3 SINE B2 -6 210 11 5 1650 961 205 54 0 chr5 139721029 139721214 -12816045 + B3 SINE B2 1 195 -21 5 1650 263 301 24 0 chr5 139721963 139722046 -12815213 - ID_B1 SINE B4 -16 208 124 5 1650 225 262 85 24 chr5 139722022 139722104 -12815155 + MER44D DNA MER2_type 10 96 -609 5 1650 249 278 69 0 chr5 139722474 139722546 -12814713 - MER21B LTR ERV1 -543 320 244 5 1651 279 211 0 0 chr5 139723123 139723175 -12814084 - ID4 SINE ID -31 52 1 5 1651 1137 160 23 3 chr5 139723132 139723332 -12813927 - ZP3AR Satellite Satellite -21 204 1 5 1651 537 130 48 48 chr5 139726178 139726283 -12810976 - B1_Mus2 SINE Alu -13 134 30 5 1651 1412 96 37 0 chr5 139726318 139726505 -12810754 - B2_Mm2 SINE B2 -1 194 1 5 1651 666 209 14 29 chr5 139726586 139726724 -12810535 + B1_Mur2 SINE Alu 1 136 -13 5 1651 22 0 0 0 chr5 139728281 139728303 -12808956 + GC_rich Low_complexity Low_complexity 1 22 0 5 1651 271 285 20 27 chr5 139728337 139728485 -12808774 + (CGG)n Simple_repeat Simple_repeat 3 149 0 5 1651 892 147 35 7 chr5 139730058 139730202 -12807057 + B1_Mur3 SINE Alu 1 148 -1 5 1651 407 244 37 4 chr5 139730641 139730752 -12806507 - B1_Mus1 SINE Alu 0 120 5 5 1651 1454 195 168 16 chr5 139731824 139732204 -12805055 - RMER15 LTR ERVL -133 442 5 5 1651 254 188 78 0 chr5 139732216 139732280 -12804979 - RMER15 LTR ERVL -506 69 1 5 1651 310 288 93 202 chr5 139732495 139732720 -12804539 - B4A SINE B4 -5 287 86 5 1651 944 215 74 10 chr5 139732720 139732922 -12804337 - B3 SINE B2 -1 215 1 5 1651 310 288 93 202 chr5 139732922 139733018 -12804241 - B4A SINE B4 -207 85 1 5 1651 660 287 39 10 chr5 139733036 139733240 -12804019 - ID_B1 SINE B4 -13 211 2 6 1651 189 0 0 0 chr5 139733616 139733637 -12803622 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 6 1651 1444 88 10 5 chr5 139733651 139733845 -12803414 - B2_Mm2 SINE B2 0 195 1 6 1651 874 62 139 0 chr5 139734192 139734203 -12803056 - B1_Mus2 SINE Alu 0 147 137 6 1651 183 42 0 0 chr5 139734203 139734227 -12803032 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 6 1651 874 62 139 0 chr5 139734227 139734344 -12802915 - B1_Mus2 SINE Alu -11 136 3 6 1651 216 0 0 0 chr5 139734682 139734706 -12802553 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 6 1651 1574 297 136 24 chr5 139734725 139735468 -12801791 - RMER15-int LTR ERVL -7 4992 4167 5 1651 480 122 0 0 chr5 139735528 139735602 -12801657 - PB1D9 SINE Alu -45 75 2 6 1651 500 319 106 58 chr5 139735728 139736104 -12801155 - RMER15-int LTR ERVL -2792 2207 1814 5 1651 1401 275 121 22 chr5 139736177 139737045 -12800214 - RMER15-int LTR ERVL -3335 1664 711 5 1651 337 308 231 0 chr5 139737484 139737653 -12799606 - RMER15 LTR ERVL 0 575 368 5 1651 248 262 73 106 chr5 139737625 139737804 -12799455 - RMER15 LTR ERVL -354 221 49 5 1651 252 86 0 0 chr5 139740664 139740699 -12796560 + (CTG)n Simple_repeat Simple_repeat 1 35 0 6 1651 376 301 72 22 chr5 139742076 139742215 -12795044 - RSINE1 SINE B4 -18 147 2 6 1651 459 243 48 19 chr5 139742282 139742387 -12794872 - PB1D10 SINE Alu -1 116 9 6 1651 318 301 53 21 chr5 139742305 139742400 -12794859 - ID_B1 SINE B4 -48 176 79 6 1651 218 328 30 43 chr5 139742622 139742749 -12794510 + MIRb SINE MIR 21 144 -64 6 1651 664 219 0 0 chr5 139743961 139744075 -12793184 - PB1D9 SINE Alu -6 114 1 6 1651 438 293 9 0 chr5 139744077 139744193 -12793066 - PB1D7 SINE Alu -3 117 1 6 1651 1509 33 71 0 chr5 139746339 139746521 -12790738 + B2_Mm2 SINE B2 1 195 0 6 1651 295 231 12 37 chr5 139747184 139747265 -12789994 + ID4 SINE ID 1 79 -4 6 1651 312 94 0 0 chr5 139747576 139747629 -12789630 + (TCTG)n Simple_repeat Simple_repeat 2 54 0 6 1651 216 0 0 0 chr5 139747629 139747653 -12789606 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1651 256 226 32 0 chr5 139748462 139748524 -12788735 + L2a LINE L2 3353 3416 -10 6 1651 1203 47 0 20 chr5 139750074 139750225 -12787034 + B1_Mus1 SINE Alu 1 148 0 6 1651 580 267 161 5 chr5 139751654 139751846 -12785413 + B4 SINE B4 2 223 -69 6 1651 1218 55 0 7 chr5 139751859 139751995 -12785264 + B1_Mm SINE Alu 1 136 -11 6 1651 531 0 0 0 chr5 139751995 139752054 -12785205 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 6 1651 1218 55 0 7 chr5 139752054 139752065 -12785194 + B1_Mm SINE Alu 137 147 0 6 1651 247 214 0 18 chr5 139752074 139752131 -12785128 + B2_Mm2 SINE B2 2 57 -138 6 1651 423 0 0 0 chr5 139752136 139752183 -12785076 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 6 1651 247 214 0 18 chr5 139752188 139752245 -12785014 + B2_Mm2 SINE B2 2 57 -138 6 1651 351 0 0 0 chr5 139752250 139752289 -12784970 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1651 619 148 0 0 chr5 139752294 139752395 -12784864 + B2_Mm2 SINE B2 2 102 -93 6 1651 545 0 15 0 chr5 139752466 139752531 -12784728 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 6 1651 299 294 16 99 chr5 139752543 139752664 -12784595 + B4A SINE B4 2 112 -180 6 1651 339 25 0 0 chr5 139752669 139752709 -12784550 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1651 411 107 0 0 chr5 139753119 139753194 -12784065 + (TC)n Simple_repeat Simple_repeat 1 75 0 6 1651 198 0 0 0 chr5 139753203 139753225 -12784034 + (CA)n Simple_repeat Simple_repeat 1 22 0 6 1651 462 270 8 53 chr5 139753225 139753358 -12783901 - B1_Mur1 SINE Alu -18 131 5 6 1651 336 299 15 59 chr5 139753581 139753716 -12783543 + B4A SINE B4 161 289 -3 6 1651 1463 88 5 0 chr5 139753824 139754017 -12783242 + B2_Mm2 SINE B2 1 194 -1 6 1651 1272 77 52 52 chr5 139754019 139754212 -12783047 + B2_Mm2 SINE B2 2 194 -1 6 1651 552 30 0 0 chr5 139754418 139754484 -12782775 + (GA)n Simple_repeat Simple_repeat 2 67 0 6 1651 1205 68 0 0 chr5 139754568 139754715 -12782544 + B1_Mus1 SINE Alu 2 148 0 6 1651 878 139 7 0 chr5 139755083 139755234 -12782025 + (CA)n Simple_repeat Simple_repeat 1 152 0 6 1651 344 272 87 18 chr5 139755605 139755774 -12781485 + MIRb SINE MIR 14 195 -73 6 1651 842 107 107 0 chr5 139757254 139757385 -12779874 + B1_Mus1 SINE Alu 3 147 -1 6 1651 186 43 0 0 chr5 139757736 139757759 -12779500 + (C)n Simple_repeat Simple_repeat 1 23 0 6 1651 210 37 0 0 chr5 139759119 139759146 -12778113 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1651 482 176 0 42 chr5 139759167 139759262 -12777997 - PB1D7 SINE Alu -18 102 12 6 1651 342 199 43 42 chr5 139759889 139759988 -12777271 + B3 SINE B2 80 178 -20 6 1651 375 23 0 0 chr5 139759988 139760032 -12777227 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1651 1507 49 8 2 chr5 139763346 139763794 -12773465 + ZP3AR Satellite Satellite 1 450 0 6 1651 231 36 0 0 chr5 139764994 139765022 -12772237 + (T)n Simple_repeat Simple_repeat 1 28 0 6 1651 1277 41 0 0 chr5 139765022 139765169 -12772090 - B1_Mm SINE Alu 0 147 1 6 1651 224 289 92 0 chr5 139765187 139765263 -12771996 - RSINE1 SINE B4 0 165 83 6 1651 477 266 152 14 chr5 139765308 139765453 -12771806 - RSINE1 SINE B4 0 165 1 6 1651 393 22 0 0 chr5 139765453 139765499 -12771760 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 6 1651 720 219 7 42 chr5 139765499 139765642 -12771617 - B1_Mur1 SINE Alu -11 138 1 6 1651 417 238 114 0 chr5 139765645 139765750 -12771509 - B4 SINE B4 -69 223 107 6 1651 483 243 92 7 chr5 139765764 139765905 -12771354 - B3A SINE B2 -13 185 33 6 1651 207 88 0 0 chr5 139765917 139765951 -12771308 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1651 223 338 14 0 chr5 139765986 139766060 -12771199 - B4 SINE B4 -212 80 6 6 1651 257 226 68 45 chr5 139766495 139766583 -12770676 + MLT1K LTR MaLR 389 478 -117 6 1651 257 203 12 129 chr5 139766739 139766824 -12770435 + PB1D9 SINE Alu 9 83 -37 6 1651 1272 217 60 94 chr5 139767331 139767816 -12769443 + MT2B LTR ERVL 1 601 0 6 1651 2293 118 11 14 chr5 139768216 139768584 -12768675 + ORR1B2 LTR MaLR 1 367 0 6 1651 488 301 118 84 chr5 139769487 139769784 -12767475 + MTE2a LTR MaLR 1 307 -72 6 1651 1570 125 134 17 chr5 139769784 139770076 -12767183 - MTC LTR MaLR 0 421 96 6 1651 323 116 42 28 chr5 139770129 139770200 -12767059 + MTE2a LTR MaLR 306 377 -2 6 1651 859 252 163 4 chr5 139770502 139770753 -12766506 + B4 SINE B4 2 292 0 6 1651 233 269 0 0 chr5 139770755 139770807 -12766452 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1651 1483 205 76 20 chr5 139771528 139771882 -12765377 + ORR1D1 LTR MaLR 1 374 0 6 1651 5103 204 71 106 chr5 139771882 139772805 -12764454 + ORR1D1-int LTR MaLR 1 846 -524 6 1651 180 0 0 0 chr5 139772805 139772825 -12764434 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 6 1651 5103 204 71 106 chr5 139772825 139773319 -12763940 + ORR1D1-int LTR MaLR 847 1369 -1 6 1651 633 195 132 0 chr5 139773321 139773551 -12763708 + ORR1D1 LTR MaLR 2 370 -4 6 1651 200 206 0 0 chr5 139775584 139775618 -12761641 + polypyrimidine Low_complexity Low_complexity 4 37 0 6 1651 351 192 12 49 chr5 139775639 139775803 -12761456 + CT-rich Low_complexity Low_complexity 1 158 0 6 1651 1307 55 4 11 chr5 139775897 139776175 -12761084 + (TCTCC)n Simple_repeat Simple_repeat 1 275 0 6 1651 327 49 0 0 chr5 139777205 139777246 -12760013 + (CCCTG)n Simple_repeat Simple_repeat 2 42 0 6 1651 368 255 21 0 chr5 139777764 139777858 -12759401 + ID_B1 SINE B4 76 171 -53 6 1651 381 204 18 72 chr5 139777778 139777889 -12759370 + PB1D10 SINE Alu 10 114 -3 6 1651 275 293 73 6 chr5 139777906 139778071 -12759188 - RLTR21 LTR ERVK -319 1253 1078 6 1651 509 268 154 7 chr5 139778778 139778921 -12758338 + RSINE1 SINE B4 2 165 0 6 1651 23 0 0 0 chr5 139779017 139779040 -12758219 + AT_rich Low_complexity Low_complexity 1 23 0 6 1651 1524 55 11 0 chr5 139779048 139779319 -12757940 + ZP3AR Satellite Satellite 1 274 0 6 1651 533 358 41 21 chr5 139779387 139779656 -12757603 + B4 SINE B4 7 292 0 6 1651 400 190 0 130 chr5 139779936 139779954 -12757305 + MT2B LTR ERVL 154 156 -445 6 1651 708 94 1 1 chr5 139779954 139780052 -12757207 + B1_Mus1 SINE Alu 3 106 -21 6 1651 528 65 0 0 chr5 139780052 139780129 -12757130 + (GA)n Simple_repeat Simple_repeat 1 77 0 6 1651 371 220 86 60 chr5 139780129 139780146 -12757113 + PB1 SINE Alu 107 121 -6 6 1651 334 281 0 0 chr5 139780442 139780524 -12756735 + PB1D10 SINE Alu 28 109 -8 6 1651 613 164 36 22 chr5 139780544 139780681 -12756578 + ID_B1 SINE B4 86 224 0 6 1651 311 281 72 10 chr5 139781024 139781121 -12756138 + PB1D10 SINE Alu 1 103 -14 6 1651 522 0 0 0 chr5 139781127 139781185 -12756074 + (TG)n Simple_repeat Simple_repeat 2 59 0 6 1651 932 131 7 35 chr5 139781185 139781328 -12755931 - B1_Mur3 SINE Alu -10 139 1 6 1651 631 184 102 23 chr5 139781335 139781463 -12755796 - B1_Mur1 SINE Alu -7 142 5 6 1651 421 265 29 0 chr5 139781493 139781595 -12755664 - RSINE1 SINE B4 -4 161 57 6 1651 1003 82 15 0 chr5 139781595 139781729 -12755530 - B1_Mur4 SINE Alu -12 138 3 6 1651 427 264 132 0 chr5 139781782 139781903 -12755356 + ID_B1 SINE B4 81 217 -7 6 1651 348 204 94 31 chr5 139781817 139781913 -12755346 + B1F SINE Alu 48 149 0 6 1651 1496 42 9 0 chr5 139782243 139782715 -12754544 + ZP3AR Satellite Satellite 1 476 -1 6 1651 248 278 17 8 chr5 139782947 139783105 -12754154 + (TGGA)n Simple_repeat Simple_repeat 1 159 0 6 1651 495 87 0 0 chr5 139783105 139783174 -12754085 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1651 196 255 9 19 chr5 139783174 139783210 -12754049 + (TGGA)n Simple_repeat Simple_repeat 4 38 0 6 1651 744 196 9 0 chr5 139783227 139783463 -12753796 + (TGGA)n Simple_repeat Simple_repeat 1 238 0 6 1651 233 257 29 0 chr5 139783940 139784010 -12753249 - ID4 SINE ID -9 74 3 6 1651 1240 149 86 9 chr5 139784021 139784231 -12753028 + URR1A DNA MER1_type 1 226 0 6 1651 225 175 0 34 chr5 139784231 139784283 -12752976 - ID4 SINE ID -32 51 1 6 1651 1076 80 0 12 chr5 139784283 139784395 -12752864 - ZP3AR Satellite Satellite -12 200 39 6 1651 455 286 16 8 chr5 139784398 139784525 -12752734 - B1F SINE Alu -5 144 17 6 1651 937 234 34 14 chr5 139784589 139784797 -12752462 - B3 SINE B2 -3 213 2 7 1651 809 200 51 13 chr5 139784822 139784979 -12752280 - RSINE1 SINE B4 0 165 3 7 1651 295 305 31 8 chr5 139784979 139785108 -12752151 + L1M5 LINE L1 5461 5592 -587 7 1651 208 135 0 0 chr5 139785127 139785164 -12752095 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1651 428 224 130 9 chr5 139785164 139785272 -12751987 - ID_B1 SINE B4 -13 211 91 7 1651 355 373 14 14 chr5 139785447 139785591 -12751668 - B4A SINE B4 -6 286 143 7 1651 253 105 0 0 chr5 139785783 139785821 -12751438 - B4A SINE B4 -214 78 41 7 1651 280 234 54 26 chr5 139786290 139786348 -12750911 + L1M5 LINE L1 3768 3854 -2292 7 1651 1063 100 0 13 chr5 139786348 139786488 -12750771 + B1_Mur4 SINE Alu 1 140 -10 7 1651 506 22 0 71 chr5 139786488 139786587 -12750672 + (CAAAC)n Simple_repeat Simple_repeat 2 93 0 7 1651 1063 100 0 13 chr5 139786587 139786598 -12750661 + B1_Mur4 SINE Alu 141 150 0 7 1651 280 231 55 25 chr5 139786598 139786685 -12750574 + L1M5 LINE L1 3829 3938 -2208 7 1651 251 132 38 0 chr5 139786685 139786738 -12750521 + B3 SINE B2 162 216 0 7 1651 254 200 109 0 chr5 139786768 139786823 -12750436 + B1_Mur4 SINE Alu 7 67 -83 7 1651 355 270 72 0 chr5 139786831 139786942 -12750317 + L1M5 LINE L1 4371 4489 -1657 7 1651 1428 89 5 0 chr5 139786990 139787180 -12750079 + B2_Mm1a SINE B2 2 192 -1 7 1651 309 288 25 99 chr5 139787336 139787498 -12749761 + B4A SINE B4 1 150 -142 7 1651 275 280 13 0 chr5 139787547 139787622 -12749637 + RSINE1 SINE B4 87 162 -3 7 1651 243 299 34 11 chr5 139787725 139787813 -12749446 + L1MC LINE L1 4713 4802 -1344 7 1651 826 211 80 42 chr5 139788058 139788296 -12748963 - B4A SINE B4 -3 289 43 7 1651 1215 55 0 0 chr5 139788377 139788523 -12748736 + B1_Mus1 SINE Alu 2 147 -1 7 1651 896 78 0 23 chr5 139788548 139788679 -12748580 - B1_Mur4 SINE Alu 0 150 23 7 1651 258 32 0 0 chr5 139789026 139789057 -12748202 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1651 262 188 188 0 chr5 139789067 139789131 -12748128 - B4 SINE B4 -1 291 216 7 1651 626 139 109 0 chr5 139789134 139789235 -12748024 - PB1D9 SINE Alu -8 112 1 7 1651 183 80 0 0 chr5 139789248 139789273 -12747986 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 7 1651 690 167 191 0 chr5 139789273 139789399 -12747860 - B1_Mur4 SINE Alu 0 150 1 7 1651 376 244 0 0 chr5 139789421 139789507 -12747752 - B4 SINE B4 -206 86 1 7 1651 205 312 16 0 chr5 139789941 139790005 -12747254 + (TG)n Simple_repeat Simple_repeat 2 66 0 7 1651 590 231 258 0 chr5 139790017 139790249 -12747010 - B4A SINE B4 0 292 1 7 1651 1130 76 14 0 chr5 139791560 139791704 -12745555 - B1_Mus1 SINE Alu 0 148 3 7 1651 379 198 69 11 chr5 139791708 139791795 -12745464 - PB1D10 SINE Alu -2 115 24 7 1651 255 122 0 0 chr5 139791800 139791849 -12745410 + (TCTG)n Simple_repeat Simple_repeat 2 50 0 7 1651 503 182 22 11 chr5 139791870 139792155 -12745104 + (TG)n Simple_repeat Simple_repeat 1 288 0 7 1651 1053 228 48 107 chr5 139792155 139792464 -12744795 - B4A SINE B4 0 292 2 7 1651 1508 63 16 0 chr5 139792775 139792964 -12744295 + B2_Mm2 SINE B2 1 192 -3 7 1651 236 347 27 0 chr5 139793093 139793168 -12744091 + MER115 DNA Tip100 159 235 -458 7 1651 911 182 0 13 chr5 139794388 139794538 -12742721 - B1_Mur2 SINE Alu 0 149 2 7 1651 520 218 18 35 chr5 139794547 139794661 -12742598 - PB1D7 SINE Alu -8 112 1 7 1651 243 293 191 22 chr5 139795257 139795288 -12741971 + B4 SINE B4 66 219 -68 7 1651 363 216 50 30 chr5 139795288 139795388 -12741871 + PB1D10 SINE Alu 9 110 -7 7 1651 1188 48 0 7 chr5 139795398 139795546 -12741713 + B1_Mus1 SINE Alu 1 147 -1 7 1651 417 33 0 16 chr5 139795559 139795621 -12741638 + B1_Mus2 SINE Alu 87 147 0 7 1651 1041 197 14 19 chr5 139795662 139795874 -12741385 + ID_B1 SINE B4 14 224 0 7 1651 586 311 25 6 chr5 139795876 139796038 -12741221 + RSINE1 SINE B4 1 165 0 7 1651 748 146 378 0 chr5 139796836 139797000 -12740259 - URR1A DNA MER1_type 0 226 1 7 1651 879 325 35 22 chr5 139797117 139797520 -12739739 + L1MB3 LINE L1 5735 6142 -41 7 1651 702 178 258 71 chr5 139797520 139797702 -12739557 + B3 SINE B2 1 216 0 7 1651 385 50 16 16 chr5 139797764 139797825 -12739434 + (CA)n Simple_repeat Simple_repeat 1 61 0 7 1651 242 322 0 0 chr5 139797831 139797890 -12739369 + PB1 SINE Alu 6 64 -63 7 1651 1181 68 14 0 chr5 139797977 139798123 -12739136 + B1_Mus1 SINE Alu 1 148 0 7 1651 1053 53 7 0 chr5 139798156 139798297 -12738962 + ZP3AR Satellite Satellite 7 148 -64 7 1651 243 385 0 0 chr5 139798297 139798380 -12738879 + ID4 SINE ID 1 83 0 7 1651 210 320 6 93 chr5 139799567 139799719 -12737540 + MIRb SINE MIR 96 238 -24 7 1651 225 216 44 60 chr5 139801292 139801474 -12735785 + (CCGCG)n Simple_repeat Simple_repeat 2 180 0 7 1651 34 42 0 0 chr5 139801493 139801541 -12735718 + GC_rich Low_complexity Low_complexity 1 48 0 7 1651 868 276 5 13 chr5 139802548 139802772 -12734487 + ID_B1 SINE B4 1 222 -2 7 1651 252 268 59 35 chr5 139802841 139802926 -12734333 - B1F SINE Alu -52 97 11 7 1651 213 154 0 49 chr5 139802935 139802976 -12734283 - MIR SINE MIR -110 152 114 7 1651 1236 230 65 14 chr5 139803844 139804122 -12733137 - B4A SINE B4 0 292 1 7 1651 1446 84 21 0 chr5 139804132 139804323 -12732936 - B2_Mm2 SINE B2 0 195 1 7 1651 738 262 82 16 chr5 139804347 139804541 -12732718 - B3 SINE B2 -9 207 1 7 1651 500 151 176 50 chr5 139804585 139804704 -12732555 - B1_Mur3 SINE Alu -2 147 14 7 1651 1094 36 0 0 chr5 139804705 139804843 -12732416 + B1_Mus1 SINE Alu 10 147 -1 7 1651 327 308 260 16 chr5 139805400 139805709 -12731550 + MLT1C LTR MaLR 1 384 -83 7 1651 594 0 0 0 chr5 139806638 139806704 -12730555 + (CTGGGG)n Simple_repeat Simple_repeat 6 71 0 7 1651 930 218 29 38 chr5 139807253 139807463 -12729796 + ID_B1 SINE B4 4 211 -13 7 1651 365 0 22 0 chr5 139807480 139807525 -12729734 + (GA)n Simple_repeat Simple_repeat 1 46 0 7 1651 529 209 139 0 chr5 139807955 139808070 -12729189 - B1_Mm SINE Alu -12 135 5 7 1651 364 166 123 22 chr5 139810135 139810235 -12727024 + PB1D10 SINE Alu 2 107 -10 7 1651 1281 27 0 0 chr5 139810246 139810392 -12726867 - B1_Mus2 SINE Alu 0 147 2 7 1651 327 135 2 24 chr5 139810439 139810514 -12726745 - B2_Mm2 SINE B2 -82 116 38 7 1651 975 108 7 0 chr5 139810526 139810674 -12726585 - B2_Mm1t SINE B2 -44 149 1 7 1651 685 279 142 27 chr5 139810801 139811062 -12726197 - B4A SINE B4 0 292 2 7 1651 204 200 0 0 chr5 139811091 139811136 -12726123 + GA-rich Low_complexity Low_complexity 1 45 0 7 1651 676 165 35 0 chr5 139811141 139811256 -12726003 + PB1D9 SINE Alu 2 120 0 7 1651 685 319 27 44 chr5 139811294 139811589 -12725670 + B4 SINE B4 1 290 -2 7 1651 185 254 8 26 chr5 139811724 139811841 -12725418 + (CA)n Simple_repeat Simple_repeat 1 115 0 7 1651 279 282 8 33 chr5 139811864 139811985 -12725274 + (CA)n Simple_repeat Simple_repeat 2 119 0 7 1651 297 0 0 0 chr5 139812000 139812033 -12725226 + (CA)n Simple_repeat Simple_repeat 2 34 0 7 1651 257 225 167 48 chr5 139812442 139812526 -12724733 + PB1D7 SINE Alu 26 119 -1 7 1651 254 29 29 0 chr5 139812861 139812896 -12724363 + (CTTA)n Simple_repeat Simple_repeat 3 38 0 7 1651 261 275 62 12 chr5 139813352 139813433 -12723826 + RSINE1 SINE B4 39 123 -42 7 1651 483 33 0 0 chr5 139813445 139813506 -12723753 + (CA)n Simple_repeat Simple_repeat 2 62 0 7 1651 369 0 0 0 chr5 139813514 139813555 -12723704 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 7 1651 519 201 427 7 chr5 139813581 139813731 -12723528 + ID_B1 SINE B4 4 216 -8 7 1651 345 366 7 7 chr5 139815757 139815911 -12721348 + B4 SINE B4 3 156 -136 7 1651 234 239 42 14 chr5 139816679 139816751 -12720508 - ID4_ SINE ID -9 74 1 7 1651 1008 96 6 13 chr5 139816751 139816910 -12720349 - ZP3AR Satellite Satellite -11 201 44 7 1651 1719 21 0 0 chr5 139816925 139817117 -12720142 - B2_Mm1a SINE B2 0 193 2 7 1651 473 299 22 7 chr5 139817128 139817263 -12719996 - B1F SINE Alu 0 149 13 7 1651 1254 41 0 0 chr5 139817777 139817924 -12719335 + B1_Mus1 SINE Alu 2 148 0 7 1651 255 205 132 0 chr5 139818340 139818423 -12718836 + B4 SINE B4 114 207 -85 7 1651 180 0 0 0 chr5 139818484 139818504 -12718755 + (CA)n Simple_repeat Simple_repeat 1 20 0 7 1651 255 288 37 12 chr5 139818739 139818820 -12718439 + ID4_ SINE ID 1 83 0 7 1651 737 265 5 75 chr5 139818831 139819043 -12718216 + B3A SINE B2 1 197 -1 7 1651 959 176 0 0 chr5 139819052 139819200 -12718059 + B1_Mur2 SINE Alu 1 148 -1 7 1651 656 240 27 14 chr5 139819287 139819435 -12717824 + RSINE1 SINE B4 9 158 -7 7 1651 743 67 0 19 chr5 139819451 139819557 -12717702 + B1_Mus1 SINE Alu 37 140 -8 7 1651 326 258 20 20 chr5 139819808 139819907 -12717352 - BC1_Mm scRNA scRNA -52 100 2 7 1651 274 254 15 0 chr5 139820002 139820069 -12717190 + ID4 SINE ID 3 70 -13 7 1651 399 260 30 0 chr5 139821556 139821656 -12715603 + B1F SINE Alu 1 103 -46 7 1651 319 320 98 49 chr5 139821695 139821941 -12715318 - MLT1C LTR MaLR -78 389 132 7 1651 186 255 0 0 chr5 139821951 139822002 -12715257 + CT-rich Low_complexity Low_complexity 43 93 0 7 1651 663 103 0 0 chr5 139822047 139822144 -12715115 + (TC)n Simple_repeat Simple_repeat 2 98 0 7 1651 943 110 44 0 chr5 139822144 139822280 -12714979 - B1_Mus2 SINE Alu -5 142 1 7 1651 570 253 147 56 chr5 139822910 139823161 -12714098 + B4A SINE B4 1 274 -18 8 1651 450 0 0 0 chr5 139823197 139823247 -12714012 + (GA)n Simple_repeat Simple_repeat 2 51 0 8 1651 414 228 0 57 chr5 139823579 139823713 -12713546 - PB1D9 SINE Alu -1 119 3 8 1651 231 287 140 93 chr5 139823580 139823730 -12713529 - ID_B1 SINE B4 0 224 68 8 1651 342 252 0 0 chr5 139823737 139823884 -12713375 + (TG)n Simple_repeat Simple_repeat 2 148 0 8 1651 859 288 75 4 chr5 139823897 139824138 -12713121 - B4A SINE B4 -6 286 29 8 1651 1639 31 5 0 chr5 139824279 139824471 -12712788 + B2_Mm1a SINE B2 1 193 0 8 1651 399 41 0 0 chr5 139824899 139824948 -12712311 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1651 266 240 81 30 chr5 139824948 139825047 -12712212 + PB1D10 SINE Alu 6 109 -8 8 1651 1851 183 84 49 chr5 139825080 139825506 -12711753 + RMER10A LTR ERVL 1 441 -1 8 1651 339 213 89 51 chr5 139825540 139825619 -12711640 + ID2 SINE ID 1 82 -1 8 1651 363 254 19 21 chr5 139825645 139825771 -12711488 - PB1D10 SINE Alu -16 133 11 8 1651 489 34 0 0 chr5 139825915 139825974 -12711285 + (TCCC)n Simple_repeat Simple_repeat 3 61 0 8 1651 223 130 0 42 chr5 139826074 139826122 -12711137 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 8 1651 697 213 42 52 chr5 139826158 139826351 -12710908 + B4 SINE B4 36 226 -66 8 1651 310 284 178 83 chr5 139826351 139826604 -12710655 + B4 SINE B4 1 277 -15 8 1651 441 0 0 0 chr5 139826658 139826707 -12710552 + (CA)n Simple_repeat Simple_repeat 2 50 0 8 1651 400 223 32 0 chr5 139826725 139826819 -12710440 + PB1D10 SINE Alu 13 109 -8 8 1651 237 204 51 0 chr5 139826882 139826950 -12710309 + B4A SINE B4 97 168 -124 8 1651 211 258 32 0 chr5 139827344 139827406 -12709853 + MIRm SINE MIR 204 267 -9 8 1651 311 231 39 0 chr5 139828918 139828996 -12708263 + ID4_ SINE ID 3 83 0 8 1651 972 62 0 0 chr5 139828996 139829124 -12708135 + (TAGA)n Simple_repeat Simple_repeat 2 129 0 8 1651 815 208 14 0 chr5 139830889 139831033 -12706226 - B1_Mur2 SINE Alu -1 148 3 8 1651 203 300 0 0 chr5 139833765 139833815 -12703444 + L4 LINE RTE 1774 1823 -206 8 1651 505 244 57 93 chr5 139834426 139834439 -12702820 - B4 SINE B4 -54 238 202 8 1651 958 75 8 0 chr5 139834439 139834573 -12702686 - B1_Mus2 SINE Alu -1 146 12 8 1651 505 244 57 93 chr5 139834573 139834620 -12702639 - B4 SINE B4 -54 201 52 8 1651 623 197 0 8 chr5 139835192 139835310 -12701949 + B1_Mur3 SINE Alu 33 149 0 8 1651 547 154 11 0 chr5 139835447 139835538 -12701721 - B1_Mur4 SINE Alu -35 115 24 8 1651 292 254 137 26 chr5 139835557 139835674 -12701585 + RCHARR1 DNA MER1_type 340 469 -505 8 1651 543 266 146 0 chr5 139835662 139835861 -12701398 + RCHARR1 DNA MER1_type 743 970 -4 8 1651 423 0 0 0 chr5 139836165 139836212 -12701047 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1651 427 306 41 8 chr5 139837004 139837126 -12700133 + ID_B1 SINE B4 33 158 -66 8 1651 453 300 86 51 chr5 139837592 139837903 -12699356 - ID_B1 SINE B4 -59 233 33 8 1651 387 0 0 0 chr5 139838014 139838057 -12699202 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1651 271 254 0 8 chr5 139839217 139839344 -12697915 + ORR1B1-int LTR MaLR 629 754 -755 8 1651 982 53 23 0 chr5 139839246 139839378 -12697881 + B1_Mus2 SINE Alu 10 144 -3 8 1651 692 156 186 9 chr5 139839398 139839575 -12697684 - B3 SINE B2 0 195 1 8 1651 804 143 31 0 chr5 139841684 139841845 -12695414 + GA-rich Low_complexity Low_complexity 1 166 0 8 1651 656 230 149 25 chr5 139842144 139842345 -12694914 + URR1A DNA MER1_type 1 226 0 8 1651 431 248 61 15 chr5 139842565 139842696 -12694563 + ID_B1 SINE B4 1 137 -87 8 1651 373 282 42 17 chr5 139842687 139842806 -12694453 - B4 SINE B4 -170 122 1 8 1651 793 211 66 66 chr5 139842843 139843056 -12694203 - B3 SINE B2 -3 213 1 8 1651 270 197 139 38 chr5 139843060 139843139 -12694120 - PB1D10 SINE Alu -8 109 23 8 1651 848 253 48 11 chr5 139843193 139843381 -12693878 + B3 SINE B2 4 198 -18 8 1651 189 0 0 0 chr5 139843719 139843740 -12693519 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1651 227 227 88 62 chr5 139843752 139843832 -12693427 - B1F SINE Alu -37 112 31 8 1651 255 155 83 33 chr5 139844513 139844573 -12692686 + PB1D10 SINE Alu 55 117 0 8 1651 184 234 0 21 chr5 139845662 139845710 -12691549 + MIRm SINE MIR 162 208 -68 8 1651 351 234 134 9 chr5 139848422 139848534 -12688725 + B3 SINE B2 7 132 -84 8 1651 468 0 0 0 chr5 139848534 139848586 -12688673 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1651 214 246 33 0 chr5 139848617 139848678 -12688581 - B1F SINE Alu -84 65 3 8 1651 825 180 5 70 chr5 139849112 139849297 -12687962 + MTD LTR MaLR 10 182 -237 8 1651 614 215 60 7 chr5 139849316 139849466 -12687793 + MTD LTR MaLR 262 419 0 8 1651 645 80 0 0 chr5 139849597 139849685 -12687574 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 8 1651 1173 71 0 0 chr5 139849687 139849828 -12687431 - B1_Mus2 SINE Alu -6 141 1 8 1651 970 101 0 0 chr5 139849829 139849968 -12687291 - B1_Mur2 SINE Alu 0 149 11 8 1651 266 330 84 58 chr5 139850087 139850396 -12686863 + RMER17C LTR ERVK 46 362 -48 8 1651 458 313 71 0 chr5 139850537 139850719 -12686540 + B3A SINE B2 4 198 0 8 1651 950 209 28 37 chr5 139850787 139851005 -12686254 - B3 SINE B2 0 216 1 8 1651 569 187 163 0 chr5 139851015 139851138 -12686121 - B1_Mur3 SINE Alu -6 143 1 8 1651 262 303 44 11 chr5 139851147 139851237 -12686022 - RSINE1 SINE B4 -69 96 4 8 1651 345 330 69 9 chr5 139851289 139851405 -12685854 - RSINE1 SINE B4 -42 123 1 8 1651 222 276 26 26 chr5 139851405 139851469 -12685790 - B1_Mus1 SINE Alu -49 99 36 8 1651 820 290 40 51 chr5 139851612 139851674 -12685585 + B4A SINE B4 9 72 -220 8 1651 1732 209 56 0 chr5 139851674 139852032 -12685227 - MTE2a LTR MaLR -1 378 1 8 1651 820 290 40 51 chr5 139852032 139852162 -12685097 + B4A SINE B4 73 200 -92 8 1651 2213 146 99 3 chr5 139852162 139852546 -12684713 + MTC LTR MaLR 1 421 0 8 1651 820 290 40 51 chr5 139852546 139852625 -12684634 + B4A SINE B4 201 278 -14 8 1652 369 260 75 28 chr5 139854382 139854489 -12682770 + PB1D10 SINE Alu 6 117 0 8 1652 866 271 37 5 chr5 139854558 139854773 -12682486 - ID_B1 SINE B4 -2 222 1 8 1652 784 226 89 103 chr5 139855587 139855868 -12681391 - B4 SINE B4 -10 282 6 8 1652 507 306 52 0 chr5 139855869 139856003 -12681256 - B1F2 SINE Alu -8 141 1 8 1652 802 263 47 19 chr5 139856042 139856255 -12681004 - ID_B1 SINE B4 0 224 6 8 1652 26 30 0 0 chr5 139856656 139856689 -12680570 + GC_rich Low_complexity Low_complexity 1 33 0 8 1652 1232 21 28 0 chr5 139857477 139857620 -12679639 - B1_Mus2 SINE Alu 0 147 1 8 1652 1109 75 0 14 chr5 139859570 139859718 -12677541 - B1_Mus1 SINE Alu -1 147 2 8 1652 401 227 89 52 chr5 139859758 139859893 -12677366 - ZP3AR Satellite Satellite -62 150 11 8 1652 370 265 36 36 chr5 139859865 139860002 -12677257 - B1F SINE Alu -3 146 10 8 1652 414 0 0 0 chr5 139860384 139860430 -12676829 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1652 564 239 8 4 chr5 139861143 139861284 -12675975 + PB1D10 SINE Alu 2 140 -7 8 1652 364 280 62 0 chr5 139861611 139861712 -12675547 + B1F1 SINE Alu 1 113 -4 8 1652 215 355 8 60 chr5 139861712 139861728 -12675531 + B4A SINE B4 86 196 -96 8 1652 306 0 0 0 chr5 139862667 139862701 -12674558 + (TG)n Simple_repeat Simple_repeat 1 34 0 8 1652 660 26 0 0 chr5 139862701 139862778 -12674481 + (GA)n Simple_repeat Simple_repeat 1 78 0 8 1652 270 0 0 0 chr5 139862803 139862833 -12674426 + (GA)n Simple_repeat Simple_repeat 1 30 0 8 1652 582 286 87 16 chr5 139862876 139863061 -12674198 - B4A SINE B4 -94 198 1 8 1652 3264 37 37 3 chr5 139866347 139866730 -12670529 + MTA_Mm LTR MaLR 1 396 0 8 1652 22 0 0 0 chr5 139869802 139869824 -12667435 + AT_rich Low_complexity Low_complexity 1 22 0 8 1652 191 294 149 47 chr5 139870624 139870731 -12666528 + MIR3 SINE MIR 78 195 -13 8 1652 234 307 0 0 chr5 139871648 139871801 -12665458 + (TG)n Simple_repeat Simple_repeat 1 153 0 8 1652 515 307 122 0 chr5 139872561 139872750 -12664509 + ID_B1 SINE B4 3 214 -10 8 1652 663 177 32 0 chr5 139872791 139872915 -12664344 + B1_Mur4 SINE Alu 11 138 -12 8 1652 414 265 14 108 chr5 139872915 139872939 -12664320 + ID_B1 SINE B4 91 224 0 8 1652 666 246 21 64 chr5 139872946 139873133 -12664126 + B3 SINE B2 27 205 -11 8 1652 380 117 0 0 chr5 139873485 139873545 -12663714 + B2_Mm2 SINE B2 1 60 -135 8 1652 225 0 0 0 chr5 139874091 139874116 -12663143 + (TG)n Simple_repeat Simple_repeat 1 25 0 8 1652 267 345 45 0 chr5 139874200 139874310 -12662949 + L1ME2 LINE L1 6013 6127 -37 8 1652 227 175 0 0 chr5 139875195 139875235 -12662024 + CT-rich Low_complexity Low_complexity 1 40 0 8 1652 1445 77 16 0 chr5 139875235 139875418 -12661841 - B2_Mm2 SINE B2 -8 187 2 8 1652 622 277 79 13 chr5 139875743 139876033 -12661226 + MTEa LTR MaLR 1 345 -14 8 1652 2043 189 61 36 chr5 139876283 139876694 -12660565 - MTC LTR MaLR 0 421 1 8 1652 881 294 33 19 chr5 139876757 139877027 -12660232 + B4 SINE B4 11 284 -8 8 1652 1098 109 12 6 chr5 139877237 139877403 -12659856 + B2_Mm2 SINE B2 1 167 -28 8 1652 369 0 0 0 chr5 139877409 139877450 -12659809 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 8 1652 458 292 45 98 chr5 139877494 139877718 -12659541 + MT2B LTR ERVL 53 264 -337 8 1652 911 102 29 0 chr5 139877614 139877751 -12659508 + B1_Mur3 SINE Alu 9 149 0 9 1652 301 273 209 0 chr5 139877791 139877901 -12659358 + B4 SINE B4 8 140 -152 9 1652 890 163 7 7 chr5 139879422 139879570 -12657689 + B1_Mur1 SINE Alu 2 149 0 9 1652 186 258 130 30 chr5 139880371 139880471 -12656788 - MIR SINE MIR -88 174 65 9 1652 423 0 0 0 chr5 139882216 139882263 -12654996 + (CA)n Simple_repeat Simple_repeat 2 48 0 9 1652 943 123 0 18 chr5 139882685 139882850 -12654409 + (GAAA)n Simple_repeat Simple_repeat 3 164 0 9 1652 359 284 30 0 chr5 139883842 139883976 -12653283 + (CA)n Simple_repeat Simple_repeat 2 139 0 9 1652 217 354 0 43 chr5 139884869 139885055 -12652204 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 9 1652 23 62 0 30 chr5 139888420 139888448 -12648811 + AT_rich Low_complexity Low_complexity 1 28 0 9 1652 1237 205 0 5 chr5 139888448 139888664 -12648595 + B3 SINE B2 1 215 -1 9 1652 23 62 0 30 chr5 139888664 139888701 -12648558 + AT_rich Low_complexity Low_complexity 1 36 0 9 1652 733 265 156 27 chr5 139889059 139889315 -12647944 - ORR1D2 LTR MaLR -70 289 1 9 1652 202 229 21 0 chr5 139889387 139889435 -12647824 + (CA)n Simple_repeat Simple_repeat 2 50 0 9 1652 336 241 74 0 chr5 139891582 139891690 -12645569 - PB1D10 SINE Alu 0 117 2 9 1652 502 246 33 148 chr5 139891830 139892040 -12645219 + B3A SINE B2 2 187 -8 9 1652 593 257 46 17 chr5 139892988 139893038 -12644221 - B4 SINE B4 -30 262 212 9 1652 806 246 80 5 chr5 139893038 139893238 -12644021 - B3 SINE B2 0 216 2 9 1652 593 257 46 17 chr5 139893238 139893361 -12643898 - B4 SINE B4 -81 211 84 9 1652 332 155 17 0 chr5 139893377 139893435 -12643824 + B1_Mur4 SINE Alu 1 59 -91 9 1652 594 133 0 20 chr5 139893493 139893593 -12643666 + B1_Mur3 SINE Alu 39 136 -13 9 1652 396 263 21 10 chr5 139893607 139893703 -12643556 + B3 SINE B2 107 203 -13 9 1652 575 266 16 0 chr5 139893747 139893875 -12643384 - RSINE1 SINE B4 -25 140 11 9 1652 284 268 91 23 chr5 139893881 139893969 -12643290 - B4 SINE B4 -197 95 2 9 1652 504 241 0 26 chr5 139894005 139894120 -12643139 + PB1D10 SINE Alu 5 116 -1 9 1652 965 287 16 0 chr5 139895564 139895808 -12641451 + B4A SINE B4 45 292 0 9 1652 261 118 0 0 chr5 139896372 139896423 -12640836 + (G)n Simple_repeat Simple_repeat 1 51 0 9 1652 907 211 67 0 chr5 139897771 139897965 -12639294 - B3 SINE B2 -8 208 2 9 1652 443 277 115 13 chr5 139898149 139898241 -12639018 + B4 SINE B4 119 223 -69 9 1652 270 0 0 0 chr5 139898241 139898271 -12638988 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 1652 443 277 115 13 chr5 139898271 139898335 -12638924 + B4 SINE B4 224 291 -1 9 1652 481 254 9 9 chr5 139899857 139899972 -12637287 - B1_Mm SINE Alu -20 127 13 9 1652 301 326 68 0 chr5 139900334 139900466 -12636793 - MER20 DNA MER1_type -62 157 17 9 1652 305 274 0 40 chr5 139900614 139900713 -12636546 - PB1 SINE Alu -4 123 29 9 1652 292 253 101 0 chr5 139900705 139900784 -12636475 + ID_B1 SINE B4 130 216 -8 9 1652 1030 84 0 27 chr5 139900795 139900941 -12636318 + B1_Mus2 SINE Alu 1 142 -5 9 1652 206 370 0 0 chr5 139900955 139901009 -12636250 + (CG)n Simple_repeat Simple_repeat 2 55 0 9 1652 312 264 14 14 chr5 139901017 139901090 -12636169 - ID2 SINE ID -9 74 2 9 1652 21 0 0 0 chr5 139903805 139903826 -12633433 + GC_rich Low_complexity Low_complexity 1 21 0 9 1652 22 0 0 0 chr5 139906033 139906055 -12631204 + GC_rich Low_complexity Low_complexity 1 22 0 9 1652 195 100 0 0 chr5 139906600 139906630 -12630629 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1652 396 288 0 71 chr5 139906686 139906813 -12630446 - B4A SINE B4 -2 290 173 9 1652 257 303 20 40 chr5 139907156 139907304 -12629955 + L1MC4 LINE L1 6938 7082 -960 9 1652 216 158 0 0 chr5 139907363 139907401 -12629858 + GA-rich Low_complexity Low_complexity 1 38 0 9 1652 376 208 13 25 chr5 139909082 139909161 -12628098 + PB1D10 SINE Alu 40 117 0 9 1652 284 132 0 38 chr5 139909167 139909246 -12628013 + A-rich Low_complexity Low_complexity 1 76 0 9 1652 577 285 12 10 chr5 139909262 139909430 -12627829 + B4 SINE B4 1 159 -65 9 1652 200 216 0 0 chr5 139909747 139909784 -12627475 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1652 275 333 14 20 chr5 139910871 139911018 -12626241 + (CA)n Simple_repeat Simple_repeat 1 146 0 9 1652 252 59 0 0 chr5 139911236 139911270 -12625989 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 9 1652 1102 73 0 0 chr5 139912385 139912521 -12624738 + B1_Mus2 SINE Alu 2 137 -10 9 1652 246 32 0 0 chr5 139912521 139912552 -12624707 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1652 585 230 115 39 chr5 139912722 139912930 -12624329 + B4A SINE B4 1 224 -68 9 1652 1043 188 55 183 chr5 139912948 139913036 -12624223 + B4A SINE B4 5 95 -197 9 1652 1238 48 0 7 chr5 139913036 139913183 -12624076 + B1_Mus2 SINE Alu 2 147 0 9 1652 1043 188 55 183 chr5 139913183 139913344 -12623915 + B4A SINE B4 96 216 -76 9 1652 180 77 0 0 chr5 139913344 139913370 -12623889 + (CTAA)n Simple_repeat Simple_repeat 3 28 0 9 1652 839 227 70 0 chr5 139913380 139913565 -12623694 + B3A SINE B2 1 198 0 9 1652 1043 188 55 183 chr5 139913565 139913615 -12623644 + B4A SINE B4 224 276 -16 9 1652 238 287 10 50 chr5 139913675 139913774 -12623485 + MTEa LTR MaLR 278 372 -7 9 1652 487 101 62 12 chr5 139914046 139914126 -12623133 + B1_Mus1 SINE Alu 2 85 -63 9 1652 240 278 0 100 chr5 139914151 139914188 -12623071 - BC1_Mm scRNA scRNA -61 91 2 9 1652 320 153 0 63 chr5 139914188 139914251 -12623008 - ID SINE ID -164 60 2 9 1652 545 221 12 69 chr5 139914760 139914854 -12622405 + B4 SINE B4 2 86 -206 9 1652 241 275 123 38 chr5 139914854 139914960 -12622299 + B1_Mur3 SINE Alu 3 117 -32 9 1652 654 84 0 0 chr5 139914954 139915049 -12622210 + B2_Mm2 SINE B2 82 176 -19 9 1652 1005 106 0 0 chr5 139915328 139915508 -12621751 + (CA)n Simple_repeat Simple_repeat 1 180 0 9 1652 383 174 26 9 chr5 139915540 139915656 -12621603 + (CA)n Simple_repeat Simple_repeat 2 119 0 9 1652 457 258 54 66 chr5 139915744 139915910 -12621349 + RSINE1 SINE B4 2 165 0 9 1652 26 0 0 0 chr5 139915925 139915951 -12621308 + AT_rich Low_complexity Low_complexity 1 26 0 9 1652 1042 236 30 4 chr5 139916168 139916402 -12620857 - B4A SINE B4 -50 242 3 9 1652 661 282 65 0 chr5 139917830 139918000 -12619259 + MTEa LTR MaLR 2 182 -197 9 1652 945 61 0 0 chr5 139918003 139918135 -12619124 + B1_Mur4 SINE Alu 19 150 0 9 1652 582 217 189 0 chr5 139918124 139918299 -12618960 + MTEa LTR MaLR 167 374 -5 9 1652 902 271 105 69 chr5 139919378 139919552 -12617707 + MTEa LTR MaLR 3 177 -202 9 1652 923 47 0 0 chr5 139919552 139919659 -12617600 + U6 snRNA snRNA 1 107 0 9 1652 4533 88 8 2 chr5 139919659 139920264 -12616995 + L1_Mus1 LINE L1 5959 6567 0 9 1652 902 271 105 69 chr5 139920264 139920449 -12616810 + MTEa LTR MaLR 178 375 -4 9 1652 624 62 0 0 chr5 139920561 139920642 -12616617 + (TG)n Simple_repeat Simple_repeat 2 82 0 9 1652 245 297 23 164 chr5 139920890 139921067 -12616192 + ID_B1 SINE B4 19 170 -54 9 1652 227 246 95 14 chr5 139921014 139921088 -12616171 + PB1D10 SINE Alu 38 117 0 9 1652 451 289 106 13 chr5 139921088 139921239 -12616020 + B4A SINE B4 6 170 -122 9 1652 333 0 0 0 chr5 139921272 139921309 -12615950 + (CA)n Simple_repeat Simple_repeat 2 38 0 9 1652 298 337 0 11 chr5 139922189 139922282 -12614977 - B4A SINE B4 -199 93 2 9 1652 377 256 33 0 chr5 139922992 139923082 -12614177 + PB1D7 SINE Alu 21 113 -7 9 1652 931 255 29 25 chr5 139923098 139923339 -12613920 + B4A SINE B4 5 246 -46 9 1652 816 35 26 0 chr5 139923321 139923434 -12613825 + B1_Mus1 SINE Alu 33 148 0 9 1652 222 219 16 0 chr5 139923556 139923571 -12613688 + A-rich Low_complexity Low_complexity 1 15 0 9 1652 724 175 40 47 chr5 139923571 139923721 -12613538 + B1_Mur1 SINE Alu 1 149 0 9 1652 222 219 16 0 chr5 139923721 139923769 -12613490 + A-rich Low_complexity Low_complexity 16 64 0 9 1652 537 307 13 13 chr5 139924370 139924449 -12612810 + ID SINE ID 2 80 -144 9 1652 300 282 165 0 chr5 139924449 139924552 -12612707 + PB1D9 SINE Alu 1 120 0 9 1652 912 128 7 0 chr5 139924614 139924755 -12612504 + B2_Mm1t SINE B2 1 142 -51 9 1652 328 129 0 40 chr5 139924773 139924840 -12612419 + B2_Mm2 SINE B2 47 109 -107 9 1652 303 326 110 39 chr5 139925108 139925363 -12611896 + L1MD2 LINE L1 6071 6343 -16 9 1652 468 91 0 0 chr5 139926538 139926604 -12610655 + (TG)n Simple_repeat Simple_repeat 1 66 0 9 1652 329 292 70 9 chr5 139926771 139926885 -12610374 - Lx9 LINE L1 -136 7508 7388 9 1652 805 234 21 16 chr5 139926906 139927097 -12610162 - ID_B1 SINE B4 -12 212 21 9 1652 235 213 0 0 chr5 139927172 139927219 -12610040 + B1F SINE Alu 11 57 -92 9 1652 1240 41 0 0 chr5 139928158 139928304 -12608955 - B1_Mus2 SINE Alu 0 147 2 9 1652 864 70 0 0 chr5 139929974 139930103 -12607156 + (GGGAGA)n Simple_repeat Simple_repeat 3 131 0 9 1652 427 260 140 19 chr5 139930174 139930331 -12606928 + ID_B1 SINE B4 1 176 -48 9 1652 508 275 73 7 chr5 139930545 139930695 -12606564 + RSINE1 SINE B4 4 163 -2 9 1652 505 322 33 0 chr5 139930847 139930999 -12606260 + RSINE1 SINE B4 3 159 -6 9 1652 353 159 14 14 chr5 139931049 139931119 -12606140 - ID4 SINE ID 0 83 14 9 1652 262 228 88 12 chr5 139931093 139931173 -12606086 - ZP3AR Satellite Satellite -77 135 50 9 1652 584 258 134 55 chr5 139931620 139931874 -12605385 + B4A SINE B4 15 288 -4 9 1652 403 244 109 44 chr5 139932017 139932154 -12605105 - B1F SINE Alu 0 149 4 9 1652 772 218 14 0 chr5 139932206 139932348 -12604911 + B1_Mur2 SINE Alu 1 144 -5 9 1652 230 206 161 0 chr5 139932689 139932781 -12604478 + PB1D7 SINE Alu 1 109 -11 1 1652 354 264 0 43 chr5 139932781 139932896 -12604363 + PB1D10 SINE Alu 8 117 0 1 1652 185 111 0 53 chr5 139932970 139933008 -12604251 + A-rich Low_complexity Low_complexity 2 37 0 1 1652 279 241 112 22 chr5 139933573 139933662 -12603597 + L1M4 LINE L1 4841 4937 -1209 1 1652 239 250 37 24 chr5 139933725 139933807 -12603452 - RLTR25B LTR ERVK -504 524 442 1 1652 449 132 0 0 chr5 139933751 139933819 -12603440 - B1_Mur2 SINE Alu -53 96 29 1 1652 1402 74 11 0 chr5 139933921 139934097 -12603162 + B2_Mm1t SINE B2 2 179 -14 1 1652 480 154 164 0 chr5 139934267 139934377 -12602882 + B3A SINE B2 2 129 -69 1 1652 288 0 0 0 chr5 139934382 139934414 -12602845 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1652 554 209 19 0 chr5 139934433 139934538 -12602721 + B3A SINE B2 1 107 -91 1 1652 429 207 8 56 chr5 139934528 139934674 -12602585 - RSINE1 SINE B4 -141 151 17 1 1652 379 320 13 64 chr5 139934620 139934777 -12602482 + B3A SINE B2 50 198 0 1 1652 661 149 69 69 chr5 139934914 139935058 -12602201 - B1_Mur4 SINE Alu 0 150 7 1 1652 860 152 13 27 chr5 139935098 139935247 -12602012 + B1_Mur3 SINE Alu 3 149 0 1 1652 378 175 0 0 chr5 139935287 139935350 -12601909 + RSINE1 SINE B4 9 71 -94 1 1652 258 181 137 14 chr5 139935361 139935434 -12601825 + B4 SINE B4 202 283 -9 1 1652 257 189 337 0 chr5 139935438 139935572 -12601687 + L1M4 LINE L1 5313 5486 -688 1 1652 363 253 14 56 chr5 139935572 139935747 -12601512 + RSINE1 SINE B4 2 166 -126 1 1652 379 305 17 17 chr5 139935963 139936083 -12601176 - PB1D7 SINE Alu 0 120 1 1 1652 289 254 22 0 chr5 139936090 139936224 -12601035 + (TGGA)n Simple_repeat Simple_repeat 4 140 0 1 1652 434 243 9 18 chr5 139936752 139936861 -12600398 + ID_B1 SINE B4 84 191 -33 1 1652 310 217 14 14 chr5 139936866 139936936 -12600323 + ID_B1 SINE B4 102 171 -53 1 1652 492 328 15 0 chr5 139936938 139937069 -12600190 + RSINE1 SINE B4 4 136 -29 1 1652 2106 164 21 13 chr5 139937198 139937575 -12599684 + RLTR14 LTR ERV1 3 382 0 1 1652 705 163 49 0 chr5 139937575 139937698 -12599561 + B1_Mur1 SINE Alu 21 149 0 1 1652 985 141 0 0 chr5 139937959 139938101 -12599158 - B1_Mur4 SINE Alu -5 145 4 1 1652 240 277 46 0 chr5 139938134 139938199 -12599060 - ID4_ SINE ID -14 69 2 1 1652 359 198 34 13 chr5 139938320 139938557 -12598702 + (TG)n Simple_repeat Simple_repeat 1 242 0 1 1652 1072 271 0 57 chr5 139938589 139938890 -12598369 - B4A SINE B4 0 292 9 1 1652 372 258 34 0 chr5 139939086 139939175 -12598084 - B1F SINE Alu -53 96 5 1 1652 232 336 27 13 chr5 139939175 139939200 -12598059 - B4A SINE B4 -107 185 66 1 1652 532 80 10 39 chr5 139939265 139939369 -12597890 + (TCC)n Simple_repeat Simple_repeat 3 103 0 1 1652 1120 82 7 0 chr5 139939384 139939530 -12597729 - B1_Mus1 SINE Alu 0 148 2 1 1652 742 285 105 23 chr5 139939789 139939849 -12597410 - B4A SINE B4 -4 288 226 1 1652 795 200 20 40 chr5 139939849 139940000 -12597259 - B1_Mur1 SINE Alu -1 148 1 1 1652 742 285 105 23 chr5 139940000 139940205 -12597054 - B4A SINE B4 -67 225 1 1 1652 252 0 0 0 chr5 139940301 139940329 -12596930 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 1 1652 457 272 9 0 chr5 139940389 139940503 -12596756 + PB1D10 SINE Alu 3 117 0 1 1652 878 170 7 0 chr5 139940563 139940704 -12596555 + B1F1 SINE Alu 1 142 -7 1 1652 704 190 36 7 chr5 139940771 139940909 -12596350 - RSINE1 SINE B4 -21 144 3 1 1652 4648 95 69 6 chr5 139941200 139941838 -12595421 - RLTR33 LTR ERVK 0 678 1 1 1652 25 0 0 0 chr5 139942093 139942118 -12595141 + AT_rich Low_complexity Low_complexity 1 25 0 1 1652 288 303 0 0 chr5 139942121 139942187 -12595072 - RSINE1 SINE B4 0 165 100 1 1652 361 161 0 129 chr5 139942189 139942282 -12594977 + MT2A LTR ERVL 1 81 -452 1 1652 388 230 0 11 chr5 139942267 139942346 -12594913 + PB1D9 SINE Alu 33 111 -9 1 1652 215 31 31 0 chr5 139942346 139942378 -12594881 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1 1652 2147 155 8 6 chr5 139942414 139942770 -12594489 + ORR1B1 LTR MaLR 38 394 0 1 1652 453 224 136 49 chr5 139942771 139942944 -12594315 - B3A SINE B2 -30 186 14 1 1652 1106 262 31 21 chr5 139943030 139943318 -12593941 + B4A SINE B4 2 292 0 1 1652 448 225 11 28 chr5 139943324 139943502 -12593757 + (CATA)n Simple_repeat Simple_repeat 4 178 0 1 1652 1355 81 11 0 chr5 139943514 139943688 -12593571 + B2_Mm1t SINE B2 2 177 -16 1 1652 313 145 0 40 chr5 139943775 139943842 -12593417 + B2_Mm2 SINE B2 47 109 -107 1 1652 180 0 0 0 chr5 139943856 139943876 -12593383 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1652 761 159 66 63 chr5 139944450 139944469 -12592790 + B1_Mur4 SINE Alu 6 148 -1 1 1652 259 283 95 137 chr5 139944469 139944637 -12592622 + B4 SINE B4 63 223 -69 1 1652 782 227 48 15 chr5 139944714 139944920 -12592339 + B3 SINE B2 2 214 -2 1 1652 1162 107 31 36 chr5 139945143 139945337 -12591922 - B2_Mm1t SINE B2 0 193 1 1 1652 1122 111 47 0 chr5 139945345 139945517 -12591742 - B2_Mm2 SINE B2 -15 180 1 1 1652 647 202 105 0 chr5 139945544 139945668 -12591591 - B1_Mur3 SINE Alu -3 146 10 1 1652 856 173 130 5 chr5 139945668 139945860 -12591399 - B3 SINE B2 0 216 1 1 1652 450 176 56 38 chr5 139946022 139946150 -12591109 + B1_Mur1 SINE Alu 18 147 -2 1 1652 688 79 20 0 chr5 139946170 139946271 -12590988 + B1_Mus2 SINE Alu 44 146 -1 1 1652 1673 10 0 0 chr5 139946273 139946466 -12590793 + B2_Mm1a SINE B2 1 193 0 1 1652 252 158 0 0 chr5 139946466 139946523 -12590736 + A-rich Low_complexity Low_complexity 1 57 0 1 1652 627 295 114 4 chr5 139946640 139946885 -12590374 + B4A SINE B4 16 287 -5 1 1652 503 192 114 8 chr5 139947038 139947169 -12590090 + B1_Mm SINE Alu 1 145 -2 1 1652 349 301 126 15 chr5 139947309 139947444 -12589815 - ZP3AR Satellite Satellite -26 186 37 1 1652 579 210 61 37 chr5 139947470 139947633 -12589626 - B3A SINE B2 -30 168 2 1 1652 610 152 25 0 chr5 139948511 139948629 -12588630 + B1_Mus1 SINE Alu 28 148 0 1 1652 471 123 0 0 chr5 139949024 139949105 -12588154 + (TG)n Simple_repeat Simple_repeat 1 81 0 1 1652 996 194 64 22 chr5 139949105 139949355 -12587904 - B4 SINE B4 -23 269 7 1 1652 245 300 193 25 chr5 139949990 139950233 -12587026 + B4A SINE B4 8 291 -1 1 1652 243 318 0 0 chr5 139951274 139951337 -12585922 + B4A SINE B4 43 105 -187 1 1652 239 309 75 0 chr5 139951399 139951493 -12585766 + B4 SINE B4 77 177 -115 1 1652 216 0 0 0 chr5 139951566 139951590 -12585669 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1652 331 236 22 33 chr5 139951593 139951685 -12585574 - B1_Mur2 SINE Alu -47 102 12 1 1652 1153 56 0 0 chr5 139951709 139951853 -12585406 + B1_Mus2 SINE Alu 1 144 -3 1 1652 206 148 18 36 chr5 139951889 139951945 -12585314 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1 1652 390 252 8 40 chr5 139952744 139952868 -12584391 + B4 SINE B4 43 162 -130 1 1652 386 278 21 67 chr5 139952932 139953097 -12584162 - RSINE1 SINE B4 -2 163 1 1 1652 285 285 0 1 chr5 139953367 139953442 -12583817 + PB1D10 SINE Alu 1 74 -75 1 1652 180 0 0 0 chr5 139953494 139953514 -12583745 + (GGA)n Simple_repeat Simple_repeat 2 21 0 1 1652 866 44 0 0 chr5 139953761 139953874 -12583385 - B1_Mm SINE Alu -1 146 34 1 1652 651 267 109 0 chr5 139954059 139954261 -12582998 + ID_B1 SINE B4 1 224 0 1 1652 232 203 0 42 chr5 139954266 139954338 -12582921 + A-rich Low_complexity Low_complexity 2 70 0 1 1652 195 42 0 0 chr5 139954355 139954379 -12582880 + (CAG)n Simple_repeat Simple_repeat 2 25 0 1 1652 832 240 53 18 chr5 139955536 139955738 -12581521 + B4 SINE B4 8 213 -79 1 1652 273 0 0 96 chr5 139955738 139955790 -12581469 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1652 832 240 53 18 chr5 139955790 139955812 -12581447 + B4 SINE B4 214 240 -52 1 1652 628 130 51 127 chr5 139956274 139956308 -12580951 - B1_Mus2 SINE Alu -1 146 125 1 1652 1220 34 0 0 chr5 139956308 139956455 -12580804 - B1_Mus2 SINE Alu 0 147 1 1 1652 628 130 51 127 chr5 139956455 139956578 -12580681 - B1_Mus2 SINE Alu -23 124 1 1 1652 278 298 225 0 chr5 139956578 139956721 -12580538 + B4A SINE B4 95 271 -21 1 1652 233 215 0 44 chr5 139956929 139956997 -12580262 + MER33 DNA MER1_type 1 65 -259 1 1652 329 307 118 0 chr5 139957002 139957035 -12580224 + B1_Mus1 SINE Alu 7 148 0 1 1652 400 266 0 0 chr5 139957035 139957129 -12580130 + ID_B1 SINE B4 131 224 0 1 1652 515 224 31 102 chr5 139957136 139957283 -12579976 + B1_Mur1 SINE Alu 13 149 0 1 1652 313 275 96 45 chr5 139957363 139957561 -12579698 + RLTR42-int LTR ERVK 1189 1396 -4126 1 1652 341 22 0 21 chr5 139958132 139958179 -12579080 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 1 1652 494 175 10 0 chr5 139958182 139958279 -12578980 - ID_B1 SINE B4 -13 211 114 1 1652 244 291 0 81 chr5 139958941 139959027 -12578232 + BC1_Mm scRNA scRNA 13 91 -61 1 1652 550 238 3 0 chr5 139959800 139959935 -12577324 - B1_Mus2 SINE Alu -11 138 1 1 1652 348 294 18 35 chr5 139959944 139960057 -12577202 - PB1D10 SINE Alu -6 111 1 1 1652 1279 80 27 0 chr5 139961007 139961160 -12576099 + B2_Mm1a SINE B2 2 154 -39 1 1652 225 0 0 0 chr5 139961160 139961185 -12576074 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1 1652 1279 80 27 0 chr5 139961185 139961218 -12576041 + B2_Mm1a SINE B2 155 192 -1 1 1652 194 70 0 140 chr5 139961218 139961243 -12576016 + polypurine Low_complexity Low_complexity 4 22 0 1 1652 1195 34 0 13 chr5 139961243 139961393 -12575866 + B1_Mus1 SINE Alu 1 148 0 1 1652 194 70 0 140 chr5 139961393 139961417 -12575842 + polypurine Low_complexity Low_complexity 23 46 0 1 1652 546 305 75 26 chr5 139961517 139961743 -12575516 + MTD LTR MaLR 6 242 -179 1 1652 484 192 25 172 chr5 139961721 139961807 -12575452 + B1_Mur2 SINE Alu 15 87 -62 1 1652 1005 89 56 164 chr5 139961807 139961963 -12575296 - B2_Mm2 SINE B2 -4 191 43 1 1652 1085 56 14 0 chr5 139961963 139962107 -12575152 + B1_Mm SINE Alu 2 147 0 1 1652 1005 89 56 164 chr5 139962107 139962164 -12575095 - B2_Mm2 SINE B2 -153 42 1 1 1652 484 192 25 172 chr5 139962164 139962234 -12575025 + B1_Mur2 SINE Alu 88 148 -1 1 1652 560 187 214 25 chr5 139962228 139962387 -12574872 + MTD LTR MaLR 196 384 -35 1 1652 233 286 88 58 chr5 139962444 139962615 -12574644 - RLTR14 LTR ERV1 -53 329 154 1 1652 689 129 380 0 chr5 139962840 139963003 -12574256 - URR1B DNA MER1_type 0 225 1 1 1652 549 289 51 5 chr5 139963129 139963324 -12573935 - RMER5 LTR ERV1 0 534 331 1 1652 240 257 70 14 chr5 139963306 139963377 -12573882 - RMER5 LTR ERV1 -411 123 49 1 1652 4274 12 2 0 chr5 139963511 139964003 -12573256 + MT2_Mm LTR ERVL 1 493 0 1 1652 358 300 174 57 chr5 139964476 139964723 -12572536 + B4A SINE B4 3 278 -14 1 1652 534 221 114 8 chr5 139964787 139964919 -12572340 + ID_B1 SINE B4 73 218 -6 1 1652 236 211 0 0 chr5 139965167 139965218 -12572041 - B1F1 SINE Alu -16 133 54 1 1652 396 0 0 0 chr5 139965341 139965385 -12571874 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1652 1196 35 0 0 chr5 139965454 139965599 -12571660 + B1_Mm SINE Alu 3 147 0 1 1652 213 39 0 0 chr5 139965599 139965625 -12571634 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1652 1164 138 26 11 chr5 139965635 139965848 -12571411 - ZP3AR Satellite Satellite -1 216 1 1 1652 317 291 0 57 chr5 139965856 139965980 -12571279 - PB1D10 SINE Alu 0 117 1 1 1652 282 200 69 28 chr5 139966432 139966504 -12570755 + L1MD3 LINE L1 7784 7858 -137 1 1652 495 41 14 0 chr5 139966827 139966900 -12570359 - ZP3AR Satellite Satellite -87 125 52 1 1652 388 193 0 57 chr5 139966905 139966993 -12570266 - B1F1 SINE Alu 0 149 67 1 1652 270 0 0 0 chr5 139967013 139967043 -12570216 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1652 1122 51 0 0 chr5 139967043 139967181 -12570078 - B1_Mus2 SINE Alu -9 138 1 1 1652 419 304 24 16 chr5 139967261 139967388 -12569871 - B1F SINE Alu -8 141 14 1 1652 292 271 23 12 chr5 139968081 139968167 -12569092 + (TGGA)n Simple_repeat Simple_repeat 4 90 0 1 1652 195 42 0 0 chr5 139968168 139968192 -12569067 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1652 950 55 0 15 chr5 139968221 139968351 -12568908 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 1 1652 215 157 20 0 chr5 139968373 139968424 -12568835 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 1 1652 692 222 62 157 chr5 139968781 139968834 -12568425 - B4A SINE B4 -14 278 212 1 1652 201 39 0 0 chr5 139968834 139968860 -12568399 + (TG)n Simple_repeat Simple_repeat 1 26 0 1 1652 564 29 0 0 chr5 139968860 139968929 -12568330 + (GA)n Simple_repeat Simple_repeat 1 70 0 1 1652 692 222 62 157 chr5 139968929 139969102 -12568157 - B4A SINE B4 -81 211 77 1 1652 1301 89 16 5 chr5 139969102 139969294 -12567965 + B2_Mm2 SINE B2 1 194 -1 1 1652 692 222 62 157 chr5 139969294 139969370 -12567889 - B4A SINE B4 -216 76 4 1 1652 532 255 7 7 chr5 139969394 139969536 -12567723 - B1F SINE Alu -5 144 3 1 1652 510 31 0 0 chr5 139970140 139970204 -12567055 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1652 1521 133 22 0 chr5 139970211 139970612 -12566647 - ZP3AR Satellite Satellite -26 409 1 1 1652 234 0 0 0 chr5 139971507 139971533 -12565726 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1652 838 55 0 0 chr5 139971533 139971643 -12565616 - B1_Mm SINE Alu 0 147 38 1 1652 356 308 20 93 chr5 139971660 139971864 -12565395 - B2_Mm2 SINE B2 -4 191 3 1 1652 488 221 44 37 chr5 139972047 139972183 -12565076 + ORR1E LTR MaLR 7 143 -216 1 1652 549 237 7 73 chr5 139972472 139972622 -12564637 + RSINE1 SINE B4 3 142 -23 1 1652 694 182 98 11 chr5 139972988 139973161 -12564098 + B3 SINE B2 15 207 -9 1 1652 1443 63 16 0 chr5 139973200 139973391 -12563868 + B2_Mm2 SINE B2 1 194 -1 1 1652 941 103 0 22 chr5 139973399 139973538 -12563721 + B1_Mur3 SINE Alu 1 136 -13 1 1652 201 74 0 0 chr5 139973543 139973570 -12563689 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1652 282 298 12 0 chr5 139973620 139973704 -12563555 + ORR1E LTR MaLR 288 372 -7 1 1652 279 327 27 9 chr5 139973717 139973828 -12563431 - Tigger7 DNA MER2_type -112 2379 2267 1 1652 1000 159 279 22 chr5 139973832 139974108 -12563151 - ORR1C2 LTR MaLR -33 351 5 1 1652 591 252 0 30 chr5 139974111 139974246 -12563013 - B1_Mur1 SINE Alu -17 132 2 1 1652 444 243 37 9 chr5 139974342 139974450 -12562809 + RSINE1 SINE B4 11 121 -44 1 1652 309 115 30 30 chr5 139974471 139974570 -12562689 + CT-rich Low_complexity Low_complexity 1 99 0 1 1652 182 208 0 20 chr5 139974634 139974683 -12562576 + C-rich Low_complexity Low_complexity 3 50 0 1 1652 1606 192 113 13 chr5 139974737 139975116 -12562143 - MTD LTR MaLR -2 417 1 1 1652 486 181 15 23 chr5 139975118 139975248 -12562011 + (CATA)n Simple_repeat Simple_repeat 2 130 0 1 1652 202 219 0 0 chr5 139975253 139975294 -12561965 + (TATATG)n Simple_repeat Simple_repeat 1 41 0 1 1652 585 297 31 10 chr5 139975294 139975488 -12561771 - ID_B1 SINE B4 -26 198 1 1 1652 485 185 147 9 chr5 139975744 139975853 -12561406 - RSINE1 SINE B4 -41 124 1 1 1652 723 131 286 0 chr5 139975891 139976059 -12561200 - B3 SINE B2 0 216 1 1 1652 332 250 26 61 chr5 139976059 139976174 -12561085 - PB1D10 SINE Alu -2 115 5 1 1652 701 344 21 29 chr5 139976219 139976237 -12561022 - B4A SINE B4 -5 287 270 1 1652 492 100 0 0 chr5 139976237 139976317 -12560942 + (TG)n Simple_repeat Simple_repeat 2 81 0 1 1652 701 344 21 29 chr5 139976317 139976579 -12560680 - B4A SINE B4 -23 269 9 1 1652 360 143 0 0 chr5 139977049 139977105 -12560154 + MTE2b LTR MaLR 1 56 -323 1 1652 745 199 21 0 chr5 139977350 139977491 -12559768 + B3 SINE B2 7 150 -66 1 1652 502 214 8 17 chr5 139977525 139977644 -12559615 - B4 SINE B4 -134 158 41 1 1652 823 289 42 21 chr5 139977726 139978012 -12559247 + B4A SINE B4 1 292 0 1 1652 369 0 0 0 chr5 139978021 139978062 -12559197 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1652 661 194 182 5 chr5 139978790 139978977 -12558282 + ID_B1 SINE B4 1 220 -4 1 1652 461 272 46 26 chr5 139979132 139979283 -12557976 + B4 SINE B4 139 292 0 1 1652 972 128 0 0 chr5 139979319 139979498 -12557761 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1652 806 269 43 63 chr5 139979510 139979781 -12557478 + MT2B LTR ERVL 290 555 -46 1 1652 378 0 0 0 chr5 139979781 139979823 -12557436 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1652 806 269 43 63 chr5 139979823 139979853 -12557406 + MT2B LTR ERVL 556 585 -16 1 1652 1219 164 5 18 chr5 139979853 139980077 -12557182 - URR1B DNA MER1_type 0 225 5 1 1652 317 237 80 44 chr5 139980105 139980242 -12557017 - L1M4 LINE L1 -339 5839 5698 1 1652 468 202 9 28 chr5 139980276 139980383 -12556876 - PB1D10 SINE Alu -8 109 5 1 1652 420 292 28 0 chr5 139980660 139980766 -12556493 + PB1D10 SINE Alu 9 117 0 1 1652 990 195 56 5 chr5 139980769 139980965 -12556294 + B3 SINE B2 2 207 -9 1 1652 216 0 0 0 chr5 139981119 139981143 -12556116 + (C)n Simple_repeat Simple_repeat 1 24 0 1 1652 304 281 58 50 chr5 139982081 139982201 -12555058 + PB1 SINE Alu 7 127 0 1 1652 989 140 35 5 chr5 139982201 139982451 -12554808 + ZP3AR Satellite Satellite 1 257 0 1 1652 309 258 47 55 chr5 139983047 139983174 -12554085 - PB1 SINE Alu -1 126 1 1 1652 1083 62 0 52 chr5 139983241 139983395 -12553864 + B1_Mm SINE Alu 2 147 0 1 1652 574 92 0 30 chr5 139983395 139983496 -12553763 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 1 1652 312 259 41 49 chr5 139983496 139983618 -12553641 - B1F1 SINE Alu -28 121 1 1 1652 843 147 6 12 chr5 139983625 139983790 -12553469 + CT-rich Low_complexity Low_complexity 4 167 0 1 1652 21 0 0 0 chr5 139983810 139983831 -12553428 + AT_rich Low_complexity Low_complexity 1 21 0 1 1652 555 206 0 0 chr5 139983860 139983962 -12553297 - B1_Mur2 SINE Alu -47 102 1 1 1652 259 290 18 99 chr5 139983962 139983988 -12553271 - MT2B LTR ERVL -446 155 139 1 1652 222 244 26 0 chr5 139984058 139984136 -12553123 - RSINE1 SINE B4 -209 83 2 1 1652 296 226 130 56 chr5 139984141 139984163 -12553096 - PB1D7 SINE Alu -3 117 96 1 1652 2029 124 67 14 chr5 139984163 139984194 -12553065 + ORR1C1 LTR MaLR 1 31 -347 1 1652 625 257 7 0 chr5 139984194 139984338 -12552921 + B1_Mus2 SINE Alu 1 145 -2 1 1652 1113 50 0 0 chr5 139984338 139984478 -12552781 + (TAGA)n Simple_repeat Simple_repeat 2 141 0 1 1652 2029 124 67 14 chr5 139984478 139984804 -12552455 + ORR1C1 LTR MaLR 32 377 -1 1 1652 296 226 130 56 chr5 139984804 139984889 -12552370 - PB1D7 SINE Alu -25 95 2 1 206 316 148 35 0 chr5 139984895 139985003 -12552256 + CT-rich Low_complexity Low_complexity 1 111 0 1 1653 798 175 0 0 chr5 139985003 139985140 -12552119 - B1_Mus2 SINE Alu -6 141 5 1 1653 645 185 0 0 chr5 139985162 139985281 -12551978 + B1_Mur4 SINE Alu 19 137 -13 1 1653 512 233 33 0 chr5 139985440 139985560 -12551699 + B1F1 SINE Alu 4 127 -22 1 1653 242 246 61 15 chr5 139985558 139985624 -12551635 + ID_B1 SINE B4 146 214 -10 1 1653 418 224 0 0 chr5 139985584 139985669 -12551590 + B1F SINE Alu 65 149 0 1 1653 481 321 96 16 chr5 139985721 139985971 -12551288 + L1MD2 LINE L1 5797 6066 -293 1 1653 372 271 18 53 chr5 139986184 139986297 -12550962 - PB1D10 SINE Alu -8 109 1 1 1653 357 151 0 0 chr5 139986694 139986780 -12550479 + CT-rich Low_complexity Low_complexity 1 86 0 1 1653 180 0 0 0 chr5 139987334 139987354 -12549905 + (TCC)n Simple_repeat Simple_repeat 2 21 0 1 1653 218 175 0 0 chr5 139987401 139987441 -12549818 - BC1_Mm scRNA scRNA -95 57 18 1 1653 306 222 110 10 chr5 139987505 139987605 -12549654 + PB1D10 SINE Alu 1 110 -7 1 1653 270 0 0 0 chr5 139987605 139987635 -12549624 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1 1653 874 160 0 13 chr5 139987639 139987791 -12549468 + B1_Mur4 SINE Alu 1 150 0 1 1653 1278 91 32 0 chr5 139987795 139987981 -12549278 + B2_Mm1t SINE B2 1 192 -1 1 1653 288 202 85 116 chr5 139988026 139988155 -12549104 + B1_Mur1 SINE Alu 9 133 -16 1 1653 204 135 0 0 chr5 139988156 139988193 -12549066 + (ATG)n Simple_repeat Simple_repeat 1 37 0 1 1653 730 271 19 15 chr5 139988213 139988419 -12548840 + B4A SINE B4 10 216 -76 1 1653 204 67 0 0 chr5 139988536 139988566 -12548693 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1653 1636 179 17 0 chr5 139988579 139988880 -12548379 - ORR1D1 LTR MaLR -29 345 40 1 1653 575 306 42 42 chr5 139988926 139989141 -12548118 + B3 SINE B2 2 216 0 1 1653 885 161 0 0 chr5 139989211 139989379 -12547880 + (CA)n Simple_repeat Simple_repeat 2 169 0 1 1653 248 159 0 0 chr5 139989802 139989846 -12547413 + PB1D10 SINE Alu 52 95 -22 1 1653 486 0 0 0 chr5 139989846 139989900 -12547359 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1653 222 306 14 0 chr5 139989903 139989975 -12547284 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 1 1653 751 155 0 72 chr5 139989975 139990128 -12547131 - B1_Mus1 SINE Alu -4 144 3 1 1653 739 151 0 0 chr5 139990171 139990290 -12546969 + B3 SINE B2 2 120 -96 1 1653 351 0 0 0 chr5 139990306 139990345 -12546914 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1653 387 0 0 0 chr5 139990455 139990498 -12546761 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1653 693 242 73 10 chr5 139990508 139990700 -12546559 - ID_B1 SINE B4 -4 220 17 1 1653 620 59 12 0 chr5 139990946 139991031 -12546228 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 1653 1128 64 0 0 chr5 139991032 139991172 -12546087 - B1_Mus2 SINE Alu -6 141 2 1 1653 27 29 0 0 chr5 139991175 139991209 -12546050 + AT_rich Low_complexity Low_complexity 1 34 0 1 1653 298 241 0 40 chr5 139991268 139991352 -12545907 - RSINE1 SINE B4 -83 82 1 1 1653 872 227 9 28 chr5 139991395 139991608 -12545651 - B3 SINE B2 -5 211 3 1 1653 798 164 7 28 chr5 139991624 139991768 -12545491 - B1_Mur2 SINE Alu -7 142 2 1 1653 370 214 153 0 chr5 139991775 139991873 -12545386 - B3 SINE B2 -6 210 98 1 1653 833 152 14 14 chr5 139991932 139992079 -12545180 + B1_Mur3 SINE Alu 2 148 -1 1 1653 342 0 0 0 chr5 139992100 139992138 -12545121 + (CAA)n Simple_repeat Simple_repeat 3 40 0 1 1653 219 36 0 0 chr5 139992700 139992728 -12544531 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 1 1653 180 234 0 0 chr5 139992752 139992799 -12544460 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 1 1653 337 319 97 71 chr5 139992843 139993110 -12544149 - B4 SINE B4 -2 290 17 1 1653 230 266 12 37 chr5 139993096 139993124 -12544135 - ID4 SINE ID -3 80 52 1 1653 349 232 12 0 chr5 139993124 139993206 -12544053 - ID4_ SINE ID 0 83 1 1 1653 230 266 12 37 chr5 139993206 139993259 -12544000 - ID4 SINE ID -32 51 1 1 1653 1510 44 0 0 chr5 139993259 139993511 -12543748 - ZP3AR Satellite Satellite -11 305 1 1 1653 222 94 0 0 chr5 139993484 139993516 -12543743 - ID2 SINE ID -43 40 9 1 1653 298 198 43 75 chr5 139993538 139993631 -12543628 - PB1D10 SINE Alu 0 117 28 1 1653 883 156 199 6 chr5 139993867 139994048 -12543211 - B3 SINE B2 0 216 1 1 1653 638 212 0 0 chr5 139994053 139994171 -12543088 - PB1D9 SINE Alu -2 118 1 1 1653 342 0 0 0 chr5 139994189 139994227 -12543032 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1653 709 269 0 7 chr5 139994230 139994380 -12542879 - RSINE1 SINE B4 -14 151 3 1 1653 413 339 0 0 chr5 139994809 139994918 -12542341 + B4A SINE B4 3 111 -181 1 1653 240 160 0 0 chr5 139994941 139994991 -12542268 - MT2A LTR ERVL 0 533 484 1 1653 1073 72 0 0 chr5 139994993 139995131 -12542128 + B1_Mus1 SINE Alu 2 139 -9 1 1653 939 101 7 0 chr5 139995158 139995296 -12541963 + B2_Mm2 SINE B2 1 139 -56 1 1653 272 27 27 0 chr5 139995313 139995350 -12541909 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1 1653 1829 226 53 45 chr5 139995369 139995762 -12541497 - MT2A LTR ERVL -74 459 53 1 1653 961 148 0 0 chr5 139995762 139995911 -12541348 - B1_Mur2 SINE Alu 0 149 1 1 1653 1829 226 53 45 chr5 139995911 139995966 -12541293 - MT2A LTR ERVL -481 52 7 1 1653 589 308 6 6 chr5 139995988 139996145 -12541114 + B4 SINE B4 136 292 0 1 1653 428 51 17 0 chr5 139996174 139996233 -12541026 + (GGGA)n Simple_repeat Simple_repeat 2 61 0 1 1653 530 251 0 5 chr5 139996241 139996363 -12540896 + B1F SINE Alu 1 118 -32 1 1653 212 338 38 0 chr5 139997004 139997084 -12540175 + B4A SINE B4 85 167 -125 1 1653 496 229 0 0 chr5 139997014 139997119 -12540140 + PB1D10 SINE Alu 10 114 -3 1 1653 412 228 193 0 chr5 139997126 139997240 -12540019 + ID_B1 SINE B4 16 151 -73 1 1653 618 39 0 0 chr5 139997255 139997332 -12539927 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 1 1653 788 195 7 13 chr5 139997483 139997634 -12539625 + B1_Mur4 SINE Alu 1 150 0 1 1653 306 0 0 0 chr5 139997749 139997783 -12539476 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1653 254 169 212 15 chr5 139998590 139998656 -12538603 + B1F1 SINE Alu 67 145 -4 1 1653 1574 50 5 0 chr5 139998677 139999270 -12537989 + ZP3AR Satellite Satellite 1 596 0 1 1653 292 260 14 0 chr5 139999270 139999343 -12537916 + ID4 SINE ID 1 74 -9 1 1653 258 394 10 0 chr5 140000368 140000467 -12536792 - RMER15 LTR ERVL -105 470 371 1 1653 1103 210 19 5 chr5 140000584 140000790 -12536469 - B3 SINE B2 -4 212 4 2 1653 285 29 0 0 chr5 140000793 140000827 -12536432 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1653 482 250 8 25 chr5 140000828 140000947 -12536312 - PB1D10 SINE Alu 0 117 1 4 1653 189 0 0 0 chr5 140001395 140001416 -12535843 + (CA)n Simple_repeat Simple_repeat 2 22 0 5 1653 739 216 36 24 chr5 140001438 140001604 -12535655 - ID_B1 SINE B4 -54 170 3 6 1653 498 277 0 9 chr5 140001611 140001724 -12535535 - PB1D7 SINE Alu -4 116 5 7 1653 355 273 23 0 chr5 140001752 140001840 -12535419 - PB1D7 SINE Alu -1 119 30 8 1653 355 278 115 43 chr5 140002137 140002276 -12534983 + B1F SINE Alu 1 149 0 9 1653 1119 40 7 0 chr5 140002284 140002435 -12534824 + ZP3AR Satellite Satellite 50 201 -11 1 1653 313 243 0 0 chr5 140002435 140002505 -12534754 + ID4_ SINE ID 1 70 -13 1 1653 254 220 51 0 chr5 140002829 140002888 -12534371 + PB1D7 SINE Alu 34 95 -25 1 1653 755 258 36 27 chr5 140002904 140003112 -12534147 + ID_B1 SINE B4 1 210 -14 1 1653 220 27 0 51 chr5 140003112 140003151 -12534108 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1 1653 808 201 0 26 chr5 140003161 140003312 -12533947 + B1_Mur1 SINE Alu 1 149 0 1 1653 688 99 0 18 chr5 140003319 140003432 -12533827 + (GGAA)n Simple_repeat Simple_repeat 2 112 0 1 1653 336 250 0 0 chr5 140003586 140003654 -12533605 - B1F SINE Alu -79 70 3 1 1653 1177 82 0 0 chr5 140003914 140004060 -12533199 + B1_Mus2 SINE Alu 2 147 0 1 1653 222 37 0 0 chr5 140004061 140004088 -12533171 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1653 525 152 0 110 chr5 140004100 140004218 -12533041 + BC1_Mm scRNA scRNA 2 106 -46 2 1653 755 178 40 0 chr5 140004216 140004368 -12532891 - B3 SINE B2 -13 203 46 2 1653 514 254 20 47 chr5 140004384 140004533 -12532726 - B4A SINE B4 -147 145 1 2 1653 601 214 45 22 chr5 140004533 140004657 -12532602 - ID_B1 SINE B4 -96 128 2 2 1653 901 189 90 21 chr5 140005279 140005468 -12531791 + ID_B1 SINE B4 2 203 -21 2 1653 439 288 68 0 chr5 140005352 140005484 -12531775 + B1_Mus2 SINE Alu 7 147 0 2 1653 588 269 0 31 chr5 140005492 140005653 -12531606 + RSINE1 SINE B4 8 163 -2 2 1653 228 163 0 0 chr5 140005671 140005714 -12531545 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2 1653 197 83 28 0 chr5 140005919 140005955 -12531304 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 2 1653 1239 131 5 30 chr5 140006011 140006048 -12531211 - B2_Mm2 SINE B2 -2 193 162 2 1653 183 80 0 0 chr5 140006048 140006073 -12531186 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 3 1653 1239 131 5 30 chr5 140006073 140006232 -12531027 - B2_Mm2 SINE B2 -34 161 2 2 1653 207 0 0 0 chr5 140006232 140006255 -12531004 + (TC)n Simple_repeat Simple_repeat 1 23 0 3 1653 319 167 0 57 chr5 140006265 140006335 -12530924 - B1_Mur3 SINE Alu 0 149 84 3 1653 292 218 0 0 chr5 140006330 140006385 -12530874 - B4 SINE B4 -236 56 2 3 1653 364 279 5 125 chr5 140006529 140006713 -12530546 + MT2B LTR ERVL 103 264 -337 3 1653 761 201 0 7 chr5 140006607 140006747 -12530512 + B1_Mur1 SINE Alu 9 147 -2 3 1653 360 203 73 0 chr5 140006816 140006920 -12530339 + B4 SINE B4 112 231 -61 3 1653 444 283 18 90 chr5 140006950 140007117 -12530142 + RSINE1 SINE B4 11 165 0 3 1653 215 242 15 29 chr5 140007146 140007214 -12530045 + (CA)n Simple_repeat Simple_repeat 2 68 0 3 1653 405 0 0 0 chr5 140007293 140007338 -12529921 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 3 1653 1219 98 11 0 chr5 140007345 140007519 -12529740 + B2_Mm2 SINE B2 11 186 -9 4 1653 207 161 0 0 chr5 140007530 140007561 -12529698 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1653 291 209 19 9 chr5 140007587 140007693 -12529566 + (CATA)n Simple_repeat Simple_repeat 4 110 0 4 1653 656 265 5 46 chr5 140007942 140008136 -12529123 + L1MB7 LINE L1 5946 6131 -53 4 1653 225 178 0 0 chr5 140008459 140008504 -12528755 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 4 1653 859 232 97 4 chr5 140008532 140008770 -12528489 + B4A SINE B4 15 274 -18 4 1653 378 0 0 0 chr5 140008775 140008817 -12528442 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1653 486 0 0 0 chr5 140009063 140009117 -12528142 + (TC)n Simple_repeat Simple_repeat 1 54 0 4 1653 447 19 0 0 chr5 140009117 140009169 -12528090 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1653 345 228 0 37 chr5 140009176 140009258 -12528001 - PB1D10 SINE Alu -28 89 11 4 1653 218 147 0 0 chr5 140009331 140009365 -12527894 + B3A SINE B2 5 38 -160 5 1653 1057 62 48 0 chr5 140009367 140009513 -12527746 + B2_Mm2 SINE B2 1 153 -42 5 1653 201 39 0 0 chr5 140009518 140009544 -12527715 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 5 1653 532 301 6 18 chr5 140009552 140009718 -12527541 + B3A SINE B2 31 194 -4 5 1653 706 323 15 5 chr5 140009741 140009943 -12527316 + ID_B1 SINE B4 20 223 -1 5 1653 354 234 109 101 chr5 140009956 140010075 -12527184 + ID_B1 SINE B4 105 224 0 5 1653 1398 87 16 0 chr5 140010086 140010245 -12527014 + B2_Mm1t SINE B2 2 160 -33 5 1653 342 0 0 0 chr5 140010245 140010283 -12526976 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 5 1653 1398 87 16 0 chr5 140010283 140010308 -12526951 + B2_Mm1t SINE B2 161 188 -5 5 1653 758 247 22 27 chr5 140010325 140010508 -12526751 + B3A SINE B2 1 182 -16 5 1653 312 301 145 8 chr5 140010524 140010548 -12526711 + B4 SINE B4 58 98 -194 5 1653 441 211 106 19 chr5 140010548 140010677 -12526582 + B1_Mur1 SINE Alu 1 140 -9 6 1653 1635 42 0 5 chr5 140010889 140011082 -12526177 - B2_Mm1t SINE B2 0 193 2 6 1653 222 37 0 0 chr5 140011226 140011253 -12526006 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6 1653 328 257 0 20 chr5 140011965 140012112 -12525147 + (TGGA)n Simple_repeat Simple_repeat 2 145 0 6 1653 225 0 0 0 chr5 140014133 140014158 -12523101 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6 1653 21 36 0 0 chr5 140014326 140014354 -12522905 + AT_rich Low_complexity Low_complexity 1 28 0 6 1653 378 0 0 0 chr5 140014740 140014782 -12522477 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1653 189 0 0 0 chr5 140014917 140014938 -12522321 + (TCTCCC)n Simple_repeat Simple_repeat 1 21 0 6 1653 29 0 0 0 chr5 140016811 140016840 -12520419 + GC_rich Low_complexity Low_complexity 1 29 0 6 1653 209 33 33 0 chr5 140017117 140017147 -12520112 + (GA)n Simple_repeat Simple_repeat 2 32 0 6 1653 21 0 0 0 chr5 140017473 140017494 -12519765 + GC_rich Low_complexity Low_complexity 1 21 0 7 1653 288 0 0 0 chr5 140017962 140017994 -12519265 + (CA)n Simple_repeat Simple_repeat 1 32 0 7 1653 513 0 0 0 chr5 140017994 140018050 -12519209 + (GA)n Simple_repeat Simple_repeat 2 58 0 7 1653 221 99 0 80 chr5 140018249 140018337 -12518922 + C-rich Low_complexity Low_complexity 5 85 0 7 1653 324 0 0 0 chr5 140018532 140018568 -12518691 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 7 1653 212 184 20 0 chr5 140018811 140018860 -12518399 + CT-rich Low_complexity Low_complexity 1 50 0 7 1653 378 255 23 32 chr5 140018896 140019253 -12518006 + CT-rich Low_complexity Low_complexity 1 353 0 7 1653 205 98 49 0 chr5 140019281 140019322 -12517937 + (TCC)n Simple_repeat Simple_repeat 1 43 0 7 1653 27 49 0 0 chr5 140019607 140019648 -12517611 + GC_rich Low_complexity Low_complexity 1 41 0 7 1653 182 128 0 25 chr5 140019892 140019932 -12517327 + C-rich Low_complexity Low_complexity 5 43 0 7 1653 30 0 0 0 chr5 140023355 140023385 -12513874 + GC_rich Low_complexity Low_complexity 1 30 0 7 1653 531 0 0 0 chr5 140023975 140024034 -12513225 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1653 510 46 0 0 chr5 140024178 140024243 -12513016 + (TCC)n Simple_repeat Simple_repeat 1 65 0 8 1653 324 0 0 0 chr5 140024448 140024484 -12512775 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1653 354 23 0 0 chr5 140024484 140024527 -12512732 + (CCA)n Simple_repeat Simple_repeat 2 44 0 8 1653 23 0 0 0 chr5 140024564 140024587 -12512672 + GC_rich Low_complexity Low_complexity 1 23 0 8 1653 459 0 0 0 chr5 140025226 140025277 -12511982 + (GA)n Simple_repeat Simple_repeat 2 52 0 8 1653 591 92 0 0 chr5 140026793 140026880 -12510379 + (GA)n Simple_repeat Simple_repeat 1 87 0 8 1653 213 231 15 44 chr5 140027657 140027725 -12509534 + G-rich Low_complexity Low_complexity 5 70 0 8 1653 211 140 20 20 chr5 140029526 140029577 -12507682 + CT-rich Low_complexity Low_complexity 4 54 0 8 1653 224 258 81 0 chr5 140029786 140029848 -12507411 - MIRm SINE MIR -123 153 87 8 1653 313 339 47 24 chr5 140034686 140034855 -12502404 + L1MEg LINE L1 1826 1998 -4086 9 1653 398 286 36 0 chr5 140035675 140035787 -12501472 - PB1D10 SINE Alu -1 116 1 9 1653 304 299 123 65 chr5 140036363 140036639 -12500620 + B4 SINE B4 1 292 0 9 1653 248 224 0 33 chr5 140036743 140036803 -12500456 + MLT1B LTR MaLR 48 105 -285 9 1653 270 0 0 0 chr5 140036803 140036833 -12500426 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 9 1653 613 170 9 0 chr5 140037310 140037416 -12499843 + ZP3AR Satellite Satellite 42 148 -64 9 1653 297 239 42 0 chr5 140037416 140037487 -12499772 + ID4 SINE ID 1 74 -9 9 1653 417 254 73 41 chr5 140038178 140038283 -12498976 + PB1 SINE Alu 1 114 -13 9 1653 444 37 0 0 chr5 140038283 140038337 -12498922 + (TAA)n Simple_repeat Simple_repeat 1 54 0 9 1653 659 138 150 23 chr5 140038341 140038474 -12498785 + B1_Mur4 SINE Alu 1 150 0 9 1653 417 316 30 44 chr5 140038474 140038517 -12498742 + PB1 SINE Alu 107 145 -4 9 1653 339 130 0 0 chr5 140038537 140038591 -12498668 + (CAA)n Simple_repeat Simple_repeat 1 54 0 1 1653 441 298 0 0 chr5 140038605 140038709 -12498550 + ZP3AR Satellite Satellite 40 143 -69 1 1653 365 175 84 36 chr5 140039297 140039380 -12497879 + ID_B1 SINE B4 127 213 -11 1 1653 363 295 22 52 chr5 140040523 140040659 -12496600 + B1F SINE Alu 13 144 -5 1 1653 915 105 13 7 chr5 140040675 140040828 -12496431 + ZP3AR Satellite Satellite 48 201 -11 1 1653 359 244 13 0 chr5 140040828 140040906 -12496353 + ID4_ SINE ID 1 79 -4 1 1653 222 137 39 19 chr5 140041903 140041955 -12495304 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1 1653 979 128 0 34 chr5 140041959 140042105 -12495154 - B1_Mur3 SINE Alu -7 142 2 1 1653 238 87 43 0 chr5 140042199 140042245 -12495014 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1653 1359 67 39 0 chr5 140042282 140042461 -12494798 - B2_Mm2 SINE B2 -7 188 3 1 1653 1144 94 0 16 chr5 140043381 140043564 -12493695 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1 1653 517 178 0 17 chr5 140043568 140043688 -12493571 + CT-rich Low_complexity Low_complexity 3 120 0 1 1653 1133 113 0 6 chr5 140043689 140043867 -12493392 + (TTC)n Simple_repeat Simple_repeat 1 177 0 1 1653 636 240 51 25 chr5 140044403 140044561 -12492698 + RSINE1 SINE B4 2 163 -2 1 1653 597 28 0 0 chr5 140044732 140044803 -12492456 + (TC)n Simple_repeat Simple_repeat 1 71 0 1 1653 468 35 0 0 chr5 140044803 140044860 -12492399 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1653 239 293 24 31 chr5 140044992 140045059 -12492200 + RMER17A LTR ERVK 344 413 -338 1 1653 908 96 11 33 chr5 140045059 140045242 -12492017 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 1 1653 239 293 24 31 chr5 140045242 140045301 -12491958 + RMER17A LTR ERVK 414 468 -283 1 1653 775 264 96 11 chr5 140045393 140045442 -12491817 - ID_B1 SINE B4 -17 275 161 1 1653 466 286 98 0 chr5 140045442 140045575 -12491684 - B1F SINE Alu 0 149 4 1 1653 775 264 96 11 chr5 140045575 140045639 -12491620 - ID_B1 SINE B4 -17 160 3 1 1653 33 0 0 0 chr5 140046495 140046528 -12490731 + AT_rich Low_complexity Low_complexity 1 33 0 1 1653 222 37 0 0 chr5 140046928 140046955 -12490304 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1653 218 266 15 15 chr5 140046959 140047024 -12490235 - ID4_ SINE ID -18 65 1 1 1653 1497 70 1 15 chr5 140046989 140047295 -12489964 - ZP3AR Satellite Satellite -29 301 1 1 1653 946 98 0 63 chr5 140047556 140047575 -12489684 - B2_Mm2 SINE B2 0 195 182 1 1653 1182 75 0 0 chr5 140047575 140047722 -12489537 + B1_Mus1 SINE Alu 2 148 0 1 1653 946 101 9 81 chr5 140047722 140047898 -12489361 - B2_Mm2 SINE B2 -14 181 33 1 1653 410 145 0 0 chr5 140047898 140047974 -12489285 - L1Md_F2 LINE L1 -11 6571 6496 1 1653 587 122 71 201 chr5 140047974 140048013 -12489246 - B3 SINE B2 -181 35 2 1 1653 646 101 18 0 chr5 140048774 140048883 -12488376 + (TG)n Simple_repeat Simple_repeat 2 112 0 1 1653 333 205 17 43 chr5 140049061 140049096 -12488163 + polypyrimidine Low_complexity Low_complexity 83 115 0 1 1653 312 48 0 0 chr5 140049096 140049138 -12488121 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1 1653 1173 76 0 0 chr5 140049139 140049283 -12487976 - B1_Mus1 SINE Alu -4 144 1 1 1653 333 205 17 43 chr5 140049283 140049362 -12487897 + CT-rich Low_complexity Low_complexity 2 82 0 1 1653 678 281 29 1 chr5 140049362 140049560 -12487699 - B4 SINE B4 -46 246 44 1 1653 389 305 77 15 chr5 140049712 140049842 -12487417 + B3A SINE B2 6 143 -55 1 1653 759 168 29 51 chr5 140049941 140050079 -12487180 - B1_Mur2 SINE Alu -13 136 2 1 1653 1245 124 0 0 chr5 140050549 140050747 -12486512 + ZP3AR Satellite Satellite 1 198 0 1 1653 372 266 11 0 chr5 140050704 140050798 -12486461 + BC1_Mm scRNA scRNA 1 95 -57 1 1653 328 263 50 0 chr5 140050809 140050908 -12486351 + L1MB4 LINE L1 6077 6180 0 1 1653 405 0 0 0 chr5 140051664 140051709 -12485550 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 1 1653 517 208 134 16 chr5 140051709 140051825 -12485434 - B1_Mus2 SINE Alu -10 137 5 1 1653 555 256 31 0 chr5 140052289 140052418 -12484841 + B3A SINE B2 24 156 -42 1 1653 237 33 0 0 chr5 140052420 140052450 -12484809 + (CCTA)n Simple_repeat Simple_repeat 1 30 0 1 1653 540 0 0 0 chr5 140052450 140052509 -12484750 + (CA)n Simple_repeat Simple_repeat 2 61 0 1 1653 1187 231 90 36 chr5 140052510 140052811 -12484448 + MTEb LTR MaLR 61 377 -2 1 1653 387 312 35 14 chr5 140053435 140053578 -12483681 - RMER15 LTR ERVL -72 503 358 1 1653 270 264 31 52 chr5 140053599 140053695 -12483564 - RMER15 LTR ERVL -416 159 66 1 1653 769 152 68 0 chr5 140053719 140053851 -12483408 - B1_Mus1 SINE Alu 0 148 8 1 1653 432 277 69 21 chr5 140053722 140053866 -12483393 - B4 SINE B4 -69 223 73 1 1653 1546 47 21 0 chr5 140053868 140054059 -12483200 - B2_Mm2 SINE B2 0 195 1 1 1653 405 246 139 23 chr5 140054935 140055064 -12482195 + B1F SINE Alu 6 149 0 1 1653 1463 47 19 1 chr5 140055036 140055689 -12481570 + ZP3AR Satellite Satellite 1 665 -1 1 1653 399 156 62 49 chr5 140055690 140055771 -12481488 + ID4_ SINE ID 2 83 0 1 1653 491 272 25 12 chr5 140055803 140055963 -12481296 + B3A SINE B2 37 198 0 1 1653 212 122 24 0 chr5 140056786 140056827 -12480432 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 1 1653 495 0 0 0 chr5 140057892 140057947 -12479312 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1653 924 161 0 0 chr5 140057947 140058084 -12479175 - B1_Mus1 SINE Alu -10 138 2 1 1653 487 257 0 0 chr5 140059110 140059215 -12478044 + PB1D10 SINE Alu 3 107 -10 1 1653 573 265 20 7 chr5 140059264 140059412 -12477847 + RSINE1 SINE B4 3 152 -13 1 1653 437 0 19 0 chr5 140059724 140059777 -12477482 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 1 1653 599 229 34 0 chr5 140059787 140059905 -12477354 - RSINE1 SINE B4 -19 146 25 1 1653 423 0 0 0 chr5 140060193 140060240 -12477019 + (CA)n Simple_repeat Simple_repeat 1 47 0 1 1653 199 211 0 0 chr5 140061909 140061947 -12475312 - MIRm SINE MIR -125 151 114 1 1653 837 293 9 26 chr5 140061963 140062191 -12475068 + ID_B1 SINE B4 1 224 0 1 1653 635 182 68 0 chr5 140062222 140062354 -12474905 - B1F2 SINE Alu 0 149 9 1 1653 376 285 41 55 chr5 140062224 140062369 -12474890 - B4 SINE B4 -69 223 81 1 1653 441 239 46 0 chr5 140062528 140062637 -12474622 - PB1D7 SINE Alu 0 120 7 1 1653 317 240 18 63 chr5 140062649 140062760 -12474499 - BC1_Mm scRNA scRNA -45 107 2 1 1653 275 324 56 14 chr5 140062769 140062913 -12474346 - L1ME3A LINE L1 -235 5938 5789 1 1653 187 221 28 37 chr5 140063092 140063200 -12474059 + CT-rich Low_complexity Low_complexity 3 109 0 1 1653 555 242 132 9 chr5 140063524 140063685 -12473574 - B3A SINE B2 -12 204 27 1 1653 180 0 0 0 chr5 140063685 140063705 -12473554 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1653 1245 54 0 0 chr5 140063705 140063852 -12473407 - B1_Mus2 SINE Alu 0 147 1 1 1653 213 150 0 0 chr5 140063854 140063894 -12473365 - B3A SINE B2 -156 42 3 1 1653 297 109 0 0 chr5 140063894 140063949 -12473310 + (CTTG)n Simple_repeat Simple_repeat 2 56 0 1 1653 1026 277 17 17 chr5 140063994 140064284 -12472975 - B4A SINE B4 -1 291 2 1 1653 1426 97 7 3 chr5 140064370 140064631 -12472628 + ZP3AR Satellite Satellite 1 261 0 1 1653 381 235 25 0 chr5 140064631 140064712 -12472547 + ID4_ SINE ID 1 83 0 1 1653 505 121 0 20 chr5 140065161 140065232 -12472027 + (TC)n Simple_repeat Simple_repeat 2 72 0 1 1653 468 0 0 0 chr5 140065232 140065284 -12471975 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1653 505 121 0 20 chr5 140065284 140065313 -12471946 + (TC)n Simple_repeat Simple_repeat 1 27 0 1 1653 614 223 46 0 chr5 140065317 140065447 -12471812 - B1_Mur2 SINE Alu -7 142 7 1 1653 333 289 8 66 chr5 140065342 140065464 -12471795 - MT2B LTR ERVL -334 267 153 1 1653 227 222 43 87 chr5 140066444 140066456 -12470803 - tRNA-Ala-GCY_ tRNA tRNA 0 75 10 1 1653 242 232 53 18 chr5 140066456 140066513 -12470746 - ID4_ SINE ID -9 74 16 1 1653 542 236 13 39 chr5 140066463 140066617 -12470642 - ZP3AR Satellite Satellite -18 194 45 1 1653 309 296 49 65 chr5 140066905 140067028 -12470231 + PB1 SINE Alu 5 125 -2 1 1653 405 271 114 19 chr5 140067001 140067159 -12470100 + ZP3AR Satellite Satellite 10 182 -30 1 1653 411 73 0 0 chr5 140067813 140067868 -12469391 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1653 473 215 0 11 chr5 140067909 140068003 -12469256 + PB1D10 SINE Alu 16 108 -9 1 1653 252 0 0 0 chr5 140068436 140068464 -12468795 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 1653 1253 26 0 0 chr5 140068465 140068619 -12468640 - B2_Mm2 SINE B2 -41 154 1 1 1653 411 130 0 0 chr5 140068752 140068829 -12468430 + (TC)n Simple_repeat Simple_repeat 1 77 0 1 1653 287 35 70 0 chr5 140070151 140070208 -12467051 + (CAAAA)n Simple_repeat Simple_repeat 3 63 0 1 1653 273 57 0 0 chr5 140070352 140070387 -12466872 + (GA)n Simple_repeat Simple_repeat 1 35 0 1 1653 228 128 0 0 chr5 140070648 140070695 -12466564 - MIR SINE MIR -106 156 110 1 1653 183 216 0 0 chr5 140071440 140071477 -12465782 + L4 LINE RTE 1790 1826 -203 1 1653 222 115 38 19 chr5 140071485 140071538 -12465721 + T-rich Low_complexity Low_complexity 3 56 0 1 1653 625 276 123 20 chr5 140071541 140071744 -12465515 - ID_B1 SINE B4 0 224 1 1 1653 241 24 0 68 chr5 140071751 140071795 -12465464 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1 1653 988 32 0 0 chr5 140071797 140071922 -12465337 - B1_Mus2 SINE Alu 0 147 23 1 1653 975 131 256 0 chr5 140072144 140072312 -12464947 - B3 SINE B2 -5 211 1 1 1653 299 278 42 42 chr5 140072439 140072523 -12464736 + MER117 DNA MER1_type 1 84 -113 1 1653 748 215 105 46 chr5 140072523 140072742 -12464517 + B4A SINE B4 2 233 -59 2 1653 352 271 31 0 chr5 140075393 140075489 -12461770 - L3b LINE CR1 -220 262 164 2 1653 446 215 142 30 chr5 140076551 140076685 -12460574 - ID_B1 SINE B4 0 224 76 2 1653 183 67 0 82 chr5 140076757 140076806 -12460453 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 2 1653 258 308 77 0 chr5 140076941 140076967 -12460292 - PB1D10 SINE Alu -13 104 7 2 1653 272 246 62 0 chr5 140076967 140077032 -12460227 - ID_B1 SINE B4 -68 156 88 2 1653 202 211 0 0 chr5 140077083 140077121 -12460138 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2 1653 751 167 0 132 chr5 140077137 140077303 -12459956 - RSINE1 SINE B4 -17 148 5 2 1653 807 186 6 36 chr5 140077319 140077486 -12459773 - ID_B1 SINE B4 -58 166 5 2 1653 310 274 14 0 chr5 140077804 140077877 -12459382 + ID SINE ID 1 74 -150 2 1653 1869 134 118 14 chr5 140078313 140078670 -12458589 - MTD LTR MaLR -13 406 13 2 1653 288 0 0 0 chr5 140079921 140079953 -12457306 + (CAGGG)n Simple_repeat Simple_repeat 1 32 0 2 1653 266 217 16 32 chr5 140080004 140080066 -12457193 - MIRm SINE MIR -105 171 111 2 1653 236 338 11 85 chr5 140080097 140080279 -12456980 - MIRm SINE MIR -45 163 1 2 1653 869 260 45 5 chr5 140081111 140081312 -12455947 + ID_B1 SINE B4 1 209 -15 2 1653 1176 212 14 5 chr5 140081356 140081569 -12455690 + B3 SINE B2 2 216 0 2 1653 239 140 20 0 chr5 140081571 140081621 -12455638 + GA-rich Low_complexity Low_complexity 3 53 0 2 1653 675 246 10 72 chr5 140081623 140081815 -12455444 + B3A SINE B2 27 198 0 2 1653 251 210 178 65 chr5 140082100 140082207 -12455052 + B1F1 SINE Alu 9 127 -22 2 1653 625 85 11 0 chr5 140082184 140082278 -12454981 + ZP3AR Satellite Satellite 21 115 -97 2 1653 459 0 0 0 chr5 140082309 140082360 -12454899 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1653 405 127 0 0 chr5 140082363 140082442 -12454817 + (GA)n Simple_repeat Simple_repeat 2 80 0 2 1653 644 384 9 15 chr5 140082442 140082783 -12454476 + L1ME4a LINE L1 5513 5851 -273 2 1653 540 158 0 0 chr5 140082785 140082880 -12454379 + (CA)n Simple_repeat Simple_repeat 2 96 0 2 1653 321 167 0 16 chr5 140082880 140082941 -12454318 + HAL1-3A_ME LINE L1 1975 2034 -824 2 1653 416 272 15 75 chr5 140083237 140083436 -12453823 - HAL1-2a_MD LINE L1 -496 2528 2342 2 1653 257 236 56 0 chr5 140083962 140084034 -12453225 + MER74B LTR ERVL 233 308 -314 2 1653 887 122 0 11 chr5 140084441 140084623 -12452636 + (TC)n Simple_repeat Simple_repeat 1 180 0 2 1653 234 0 0 0 chr5 140084623 140084649 -12452610 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1653 1654 128 94 56 chr5 140084649 140084988 -12452271 + ORR1B1 LTR MaLR 41 392 -2 2 1653 513 272 132 29 chr5 140084992 140085067 -12452192 - B4 SINE B4 -1 291 198 2 1653 288 0 0 0 chr5 140085067 140085099 -12452160 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1653 513 272 132 29 chr5 140085099 140085197 -12452062 - B4 SINE B4 -95 197 100 2 1653 303 275 190 0 chr5 140085273 140085389 -12451870 - RSINE1 SINE B4 -25 140 3 2 1653 450 174 76 0 chr5 140085391 140085483 -12451776 - B4 SINE B4 -193 99 1 2 1653 473 202 199 68 chr5 140086061 140086252 -12451007 + B3 SINE B2 1 216 0 2 1653 668 239 82 16 chr5 140086266 140086449 -12450810 + B4 SINE B4 84 278 -14 2 1653 339 239 0 0 chr5 140086468 140086556 -12450703 + (CA)n Simple_repeat Simple_repeat 1 88 0 2 1653 308 300 12 0 chr5 140087537 140087617 -12449642 - ID4 SINE ID -2 81 1 2 1653 230 220 20 0 chr5 140087619 140087669 -12449590 - ID4 SINE ID -32 51 1 2 1653 1470 43 14 0 chr5 140087659 140088075 -12449184 - ZP3AR Satellite Satellite -1 422 1 2 1653 305 250 15 0 chr5 140088117 140088185 -12449074 - PB1D10 SINE Alu -44 73 5 2 1653 588 335 73 7 chr5 140088927 140089201 -12448058 + B4A SINE B4 1 292 0 2 1653 724 164 0 0 chr5 140089338 140089448 -12447811 - PB1D10 SINE Alu -6 111 2 2 1653 288 327 9 0 chr5 140090445 140090552 -12446707 + MER33 DNA MER1_type 159 266 -58 2 1653 1077 123 0 0 chr5 140090610 140090789 -12446470 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1653 724 222 80 6 chr5 140090806 140090969 -12446290 - B3A SINE B2 -16 182 8 2 1653 585 0 0 0 chr5 140091016 140091081 -12446178 + (TCCC)n Simple_repeat Simple_repeat 2 66 0 2 1653 728 170 21 28 chr5 140091102 140091247 -12446012 - B1_Mur4 SINE Alu -1 149 6 2 1653 790 129 0 14 chr5 140091252 140091394 -12445865 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 2 1653 724 177 0 0 chr5 140091394 140091534 -12445725 - B1_Mur1 SINE Alu -5 145 6 2 1653 339 213 27 0 chr5 140091552 140091627 -12445632 - B1F2 SINE Alu -38 111 35 2 1653 609 266 233 30 chr5 140091726 140092087 -12445172 - Lx8 LINE L1 -2 7471 7038 2 1653 762 108 61 22 chr5 140092100 140092517 -12444742 + (TG)n Simple_repeat Simple_repeat 1 433 0 2 1653 605 226 32 5 chr5 140096043 140096223 -12441036 + B3 SINE B2 14 198 0 2 1653 491 295 13 45 chr5 140096246 140096402 -12440857 + RSINE1 SINE B4 2 152 -13 2 1653 180 152 0 0 chr5 140096420 140096453 -12440806 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1653 273 192 0 19 chr5 140096617 140096670 -12440589 + B4 SINE B4 53 104 -188 2 1653 429 149 0 0 chr5 140096661 140096728 -12440531 + tRNA-Gly-GGY tRNA tRNA 6 72 -2 2 1653 242 104 0 77 chr5 140096739 140096761 -12440498 + A-rich Low_complexity Low_complexity 1 19 0 2 1653 1078 110 7 0 chr5 140096761 140096907 -12440352 + B1_Mus2 SINE Alu 1 147 0 2 1653 242 104 0 77 chr5 140096907 140096936 -12440323 + A-rich Low_complexity Low_complexity 20 48 0 2 1653 899 167 101 22 chr5 140096945 140097123 -12440136 + B2_Mm2 SINE B2 1 192 -3 2 1653 644 260 28 115 chr5 140097123 140097340 -12439919 + B4 SINE B4 87 284 -8 2 1653 548 234 6 0 chr5 140097361 140097528 -12439731 + (CA)n Simple_repeat Simple_repeat 2 169 0 2 1653 328 241 0 33 chr5 140097529 140097604 -12439655 + (CATATA)n Simple_repeat Simple_repeat 1 73 0 2 1653 240 100 0 0 chr5 140097604 140097644 -12439615 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 2 1653 501 47 0 0 chr5 140097644 140097707 -12439552 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1653 328 241 0 33 chr5 140097707 140097720 -12439539 + (CATATA)n Simple_repeat Simple_repeat 2 14 0 2 1653 186 214 69 35 chr5 140098154 140098212 -12439047 - MER5A DNA MER1_type -88 101 42 2 1653 425 275 0 9 chr5 140098290 140098400 -12438859 + PB1D10 SINE Alu 2 110 -7 2 1653 396 287 9 9 chr5 140098428 140098544 -12438715 + B1F SINE Alu 29 144 -5 2 1653 654 246 138 4 chr5 140098649 140098874 -12438385 + Lx8 LINE L1 6839 7093 -380 2 1653 323 309 0 21 chr5 140098959 140099055 -12438204 + RMER15 LTR ERVL 372 465 -110 2 1653 909 114 6 45 chr5 140099664 140099820 -12437439 - ZP3AR Satellite Satellite -53 159 10 2 1653 273 29 0 0 chr5 140101041 140101075 -12436184 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 2 1653 1428 90 26 0 chr5 140101078 140101267 -12435992 - B2_Mm2 SINE B2 0 195 2 2 1653 1024 182 39 65 chr5 140101301 140101530 -12435729 - ID_B1 SINE B4 0 224 2 2 1653 210 303 67 12 chr5 140102439 140102567 -12434692 - MIR SINE MIR -29 239 96 2 1653 201 250 0 0 chr5 140102779 140102823 -12434436 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 2 1653 207 167 0 0 chr5 140102859 140102901 -12434358 + CT-rich Low_complexity Low_complexity 3 44 0 2 1653 209 125 0 0 chr5 140103300 140103332 -12433927 - L2b LINE L2 -321 3054 3023 2 1653 328 269 161 0 chr5 140103934 140104082 -12433177 + MIRc SINE MIR 32 209 -59 2 1653 2267 158 80 8 chr5 140104087 140104476 -12432783 + MTC LTR MaLR 1 417 -4 2 1653 468 282 92 51 chr5 140104610 140104827 -12432432 - L1MB5 LINE L1 -8 6166 5941 2 1653 918 163 14 7 chr5 140105268 140105416 -12431843 + B1_Mur1 SINE Alu 1 149 0 2 1653 197 108 0 26 chr5 140105517 140105555 -12431704 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1653 330 148 0 0 chr5 140105561 140105622 -12431637 - B4A SINE B4 -16 276 216 2 1653 412 91 14 5 chr5 140105613 140105724 -12431535 - B2_Mm2 SINE B2 -3 192 47 2 1653 1329 91 23 0 chr5 140105768 140105944 -12431315 - B2_Mm2 SINE B2 -14 181 2 2 1653 516 279 92 29 chr5 140105950 140106157 -12431102 - ID_B1 SINE B4 -3 221 2 2 1653 453 327 136 12 chr5 140106210 140106670 -12430589 - L1MEc LINE L1 -4367 2035 1445 2 1653 22 0 0 0 chr5 140106735 140106757 -12430502 + AT_rich Low_complexity Low_complexity 1 22 0 2 1653 525 240 155 92 chr5 140106803 140106854 -12430405 - MT2B2 LTR ERVL -2 531 481 2 1653 348 111 0 0 chr5 140106854 140106908 -12430351 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 1653 889 209 98 50 chr5 140106908 140107237 -12430022 - MT2B2 LTR ERVL -56 528 127 2 1653 4101 100 17 11 chr5 140107258 140107904 -12429355 - RMER6A LTR ERVK -106 650 1 2 1653 393 248 68 49 chr5 140107904 140108107 -12429152 + MTEa LTR MaLR 159 373 -6 2 1653 288 0 0 0 chr5 140108240 140108272 -12428987 + (T)n Simple_repeat Simple_repeat 1 32 0 2 1653 288 0 0 0 chr5 140108299 140108331 -12428928 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 1653 285 75 0 0 chr5 140108331 140108370 -12428889 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1653 676 271 160 24 chr5 140108393 140108605 -12428654 - B4A SINE B4 0 292 52 2 1653 1311 211 86 67 chr5 140108788 140109072 -12428187 - MTD LTR MaLR 0 419 115 2 1653 4638 30 2 9 chr5 140109072 140109615 -12427644 + L1Md_F2 LINE L1 6044 6582 0 2 1653 1311 211 86 67 chr5 140109615 140109701 -12427558 - MTD LTR MaLR -305 114 42 2 1653 2877 145 67 10 chr5 140109745 140110252 -12427007 - RMER4B LTR ERVK 0 585 50 3 1653 417 39 0 0 chr5 140110252 140110303 -12426956 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1653 2523 241 41 15 chr5 140110422 140111211 -12426048 - Lx5 LINE L1 0 7050 6446 3 1653 243 0 0 0 chr5 140111239 140111266 -12425993 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3 1653 311 309 159 49 chr5 140111436 140111681 -12425578 - L1MEc LINE L1 -5787 613 342 3 1653 376 271 177 5 chr5 140111682 140111897 -12425362 - RMER15 LTR ERVL -15 560 309 3 1653 571 252 0 58 chr5 140111897 140112053 -12425206 + B3A SINE B2 51 197 -1 3 1653 670 199 35 208 chr5 140112056 140112373 -12424886 - RCHARR1 DNA MER1_type -234 740 479 3 1653 444 130 0 0 chr5 140112456 140112548 -12424711 + (GA)n Simple_repeat Simple_repeat 2 93 0 3 1653 609 313 16 16 chr5 140112553 140112735 -12424524 - B3A SINE B2 -16 182 1 3 1653 587 160 75 9 chr5 140112735 140112842 -12424417 - B1_Mm SINE Alu -32 115 2 3 1653 235 284 65 119 chr5 140112842 140112906 -12424353 - MT2B LTR ERVL -441 160 106 3 1653 536 222 150 12 chr5 140112946 140113106 -12424153 + RMER15 LTR ERVL 389 570 -5 3 1653 606 199 24 110 chr5 140113147 140113311 -12423948 + B1_Mur4 SINE Alu 1 150 0 3 1653 332 60 0 39 chr5 140113311 140113363 -12423896 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 3 1653 1996 139 63 16 chr5 140113623 140113988 -12423271 - ORR1B1 LTR MaLR -8 386 5 3 1653 267 294 138 121 chr5 140114002 140114300 -12422959 - ORR1E LTR MaLR -36 323 21 3 1653 390 91 0 0 chr5 140114389 140114444 -12422815 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1653 930 261 52 48 chr5 140114445 140114715 -12422544 - B4 SINE B4 -20 272 2 3 1654 360 185 15 0 chr5 140116033 140116098 -12421161 - ID4 SINE ID -17 66 1 3 1654 1580 86 11 0 chr5 140116098 140116520 -12420739 - ZP3AR Satellite Satellite -11 426 1 3 1654 502 312 7 7 chr5 140116526 140116671 -12420588 - ID_B1 SINE B4 -2 222 78 3 1654 813 284 19 109 chr5 140118460 140118478 -12418781 - B4 SINE B4 -8 284 271 3 1654 390 57 0 0 chr5 140118478 140118531 -12418728 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1654 813 284 19 109 chr5 140118531 140118547 -12418712 - B4 SINE B4 -22 270 261 3 1654 1732 172 166 18 chr5 140118547 140118890 -12418369 + ORR1B1 LTR MaLR 1 394 0 3 1654 813 284 19 109 chr5 140118890 140118930 -12418329 - B4 SINE B4 -32 260 192 3 1654 820 156 0 0 chr5 140118930 140119058 -12418201 - B1_Mur4 SINE Alu -7 143 16 3 1654 813 284 19 109 chr5 140119058 140119166 -12418093 - B4 SINE B4 -32 191 1 3 1654 218 61 19 58 chr5 140119680 140119732 -12417527 + (GGA)n Simple_repeat Simple_repeat 2 51 0 3 1654 391 333 12 12 chr5 140120132 140120302 -12416957 + GA-rich Low_complexity Low_complexity 1 170 0 3 1654 218 149 0 21 chr5 140120304 140120331 -12416928 + polypurine Low_complexity Low_complexity 5 31 0 3 1654 1116 133 0 0 chr5 140120331 140120511 -12416748 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 3 1654 218 149 0 21 chr5 140120511 140120531 -12416728 + polypurine Low_complexity Low_complexity 32 50 0 3 1654 789 241 15 146 chr5 140121515 140121850 -12415409 + ORR1E LTR MaLR 1 291 -68 3 1654 648 273 26 7 chr5 140121893 140122048 -12415211 - RSINE1 SINE B4 -4 161 4 3 1654 689 276 112 0 chr5 140122051 140122247 -12415012 - B4A SINE B4 -72 220 3 3 1654 639 121 0 0 chr5 140122299 140122398 -12414861 + (TTCC)n Simple_repeat Simple_repeat 1 99 0 3 1654 672 131 11 235 chr5 140122398 140122577 -12414682 - B1_Mur1 SINE Alu -6 143 5 3 1654 186 333 11 11 chr5 140122989 140123077 -12414182 + MIRb SINE MIR 88 175 -93 3 1654 349 184 0 62 chr5 140123141 140123222 -12414037 - B1_Mur1 SINE Alu -17 132 57 3 1654 319 266 21 0 chr5 140123349 140123443 -12413816 - PB1D10 SINE Alu -21 96 1 3 1654 884 118 81 0 chr5 140123678 140123814 -12413445 + B1_Mus1 SINE Alu 2 148 0 3 1654 698 292 80 36 chr5 140124665 140124914 -12412345 + B4A SINE B4 32 291 -1 3 1654 294 248 28 37 chr5 140124914 140125023 -12412236 + (CA)n Simple_repeat Simple_repeat 1 108 0 3 1654 211 276 125 2 chr5 140125409 140125507 -12411752 + MIRb SINE MIR 28 141 -127 3 1654 853 231 70 10 chr5 140125853 140126054 -12411205 - ID_B1 SINE B4 -10 214 2 3 1654 252 143 0 0 chr5 140126304 140126346 -12410913 + (CACCAT)n Simple_repeat Simple_repeat 3 44 0 3 1654 415 311 25 0 chr5 140126418 140126540 -12410719 - B1F SINE Alu 0 149 25 3 1654 225 178 0 0 chr5 140127093 140127138 -12410121 + CT-rich Low_complexity Low_complexity 1 45 0 3 1654 543 280 30 54 chr5 140127207 140127373 -12409886 - B4 SINE B4 -13 279 118 3 1654 635 181 0 7 chr5 140127393 140127856 -12409403 + (TG)n Simple_repeat Simple_repeat 1 459 0 3 1654 567 199 0 0 chr5 140127872 140128227 -12409032 + (TG)n Simple_repeat Simple_repeat 1 355 0 3 1654 498 203 0 0 chr5 140128240 140128539 -12408720 + (TG)n Simple_repeat Simple_repeat 1 299 0 3 1654 594 202 0 0 chr5 140128550 140129104 -12408155 + (TG)n Simple_repeat Simple_repeat 1 554 0 3 1654 305 197 15 15 chr5 140129109 140129176 -12408083 - HAL1-3A_ME LINE L1 -824 2034 1968 3 1654 318 162 0 0 chr5 140129180 140129254 -12408005 + (TG)n Simple_repeat Simple_repeat 1 74 0 3 1654 418 325 47 66 chr5 140129426 140129683 -12407576 + B4A SINE B4 2 253 -39 3 1654 243 0 0 0 chr5 140129712 140129739 -12407520 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1654 546 187 15 89 chr5 140129991 140130126 -12407133 + RSINE1 SINE B4 3 127 -38 3 1654 789 67 0 0 chr5 140130134 140130238 -12407021 + (GGGGA)n Simple_repeat Simple_repeat 4 107 0 3 1654 2698 200 158 8 chr5 140130358 140130770 -12406489 + RMER19A LTR ERVK 1 451 -286 3 1654 369 0 0 0 chr5 140130770 140130811 -12406448 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 1654 2698 200 158 8 chr5 140130811 140131039 -12406220 + RMER19A LTR ERVK 452 736 -1 3 1654 339 322 36 72 chr5 140131052 140131246 -12406013 - L1M4 LINE L1 -1472 4674 4488 3 1654 555 221 49 0 chr5 140131263 140131385 -12405874 - B1_Mus1 SINE Alu -18 130 3 3 1654 1255 47 0 0 chr5 140131389 140131537 -12405722 - B1_Mus1 SINE Alu 0 148 1 3 1654 637 143 27 0 chr5 140131804 140131916 -12405343 - B1_Mur1 SINE Alu 0 149 35 3 1654 429 280 8 41 chr5 140132002 140132125 -12405134 - RSINE1 SINE B4 0 165 47 3 1654 770 233 14 0 chr5 140132188 140132334 -12404925 + B1_Mur1 SINE Alu 2 149 0 3 1654 303 169 0 0 chr5 140132415 140132433 -12404826 + (ATGGTG)n Simple_repeat Simple_repeat 5 22 0 3 1654 3195 74 5 0 chr5 140132433 140132827 -12404432 + MTA_Mm LTR MaLR 1 396 0 3 1654 303 169 0 0 chr5 140132827 140132867 -12404392 + (ATGGTG)n Simple_repeat Simple_repeat 1 40 0 3 1654 585 0 0 0 chr5 140132982 140133047 -12404212 + (TC)n Simple_repeat Simple_repeat 2 66 0 3 1654 644 280 106 8 chr5 140133100 140133345 -12403914 + B4 SINE B4 20 288 -4 3 1654 207 96 58 0 chr5 140133361 140133413 -12403846 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1654 469 95 53 20 chr5 140133502 140133652 -12403607 + (CA)n Simple_repeat Simple_repeat 1 155 0 3 1654 359 56 14 40 chr5 140133649 140133723 -12403536 + (CCA)n Simple_repeat Simple_repeat 3 74 0 3 1654 417 30 29 15 chr5 140135811 140135879 -12401380 + (CAAAA)n Simple_repeat Simple_repeat 2 70 0 3 1654 411 267 67 0 chr5 140137436 140137541 -12399718 + PB1D10 SINE Alu 5 116 -1 3 1654 645 105 0 0 chr5 140137615 140137710 -12399549 + (TCCC)n Simple_repeat Simple_repeat 1 95 0 3 1654 733 254 17 111 chr5 140137714 140137949 -12399310 - ID_B1 SINE B4 -11 213 1 3 1654 542 295 32 21 chr5 140137949 140138136 -12399123 + MER2 DNA MER2_type 109 297 -48 3 1654 371 289 3 7 chr5 140138164 140138458 -12398801 + (TG)n Simple_repeat Simple_repeat 1 293 0 3 1654 804 235 54 5 chr5 140138487 140138671 -12398588 + B3A SINE B2 6 198 0 3 1654 691 250 135 9 chr5 140138828 140139050 -12398209 + B4 SINE B4 2 251 -41 3 1654 662 88 32 0 chr5 140139052 140139177 -12398082 + (TC)n Simple_repeat Simple_repeat 1 129 0 3 1654 847 242 55 10 chr5 140139236 140139436 -12397823 + B3 SINE B2 1 209 -7 3 1654 1696 42 0 0 chr5 140139470 140139663 -12397596 + B2_Mm1t SINE B2 1 193 0 3 1654 203 189 0 0 chr5 140140010 140140047 -12397212 + MIRc SINE MIR 112 148 -120 3 1654 314 315 0 0 chr5 140140585 140140658 -12396601 - ID4_ SINE ID -10 73 1 3 1654 573 15 0 0 chr5 140140788 140140854 -12396405 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 1654 233 323 83 0 chr5 140140856 140140952 -12396307 - PB1D10 SINE Alu -13 104 1 3 1654 334 303 113 38 chr5 140141521 140141706 -12395553 - MLT1G3 LTR MaLR -181 414 216 3 1654 315 0 0 0 chr5 140141707 140141744 -12395515 - HAL1-3A_ME LINE L1 -844 2014 1978 3 1654 386 215 0 22 chr5 140141788 140141969 -12395290 + (TG)n Simple_repeat Simple_repeat 1 177 0 3 1654 319 65 22 0 chr5 140141975 140142021 -12395238 - HAL1-3A_ME LINE L1 -846 2012 1966 3 1654 279 0 0 0 chr5 140143197 140143228 -12394031 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1654 23 0 0 0 chr5 140143848 140143871 -12393388 + GC_rich Low_complexity Low_complexity 1 23 0 3 1654 209 378 0 0 chr5 140146164 140146238 -12391021 - L3 LINE CR1 -110 4379 4306 3 1654 301 317 12 0 chr5 140146272 140146354 -12390905 - ID4 SINE ID 0 83 1 3 1654 1439 68 14 1 chr5 140146354 140146872 -12390387 - ZP3AR Satellite Satellite -11 524 1 3 1654 422 306 25 0 chr5 140146864 140147000 -12390259 - B1F SINE Alu 0 149 11 3 1654 580 77 22 0 chr5 140147072 140147163 -12390096 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 3 1654 358 289 0 0 chr5 140147458 140147541 -12389718 + ID4 SINE ID 1 83 0 3 1654 249 33 0 0 chr5 140147625 140147655 -12389604 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1654 504 309 85 25 chr5 140147664 140147863 -12389396 - B4A SINE B4 -1 291 81 3 1654 724 238 7 0 chr5 140147902 140148049 -12389210 - RSINE1 SINE B4 -15 150 3 4 1654 315 0 0 0 chr5 140148129 140148164 -12389095 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1654 594 262 14 7 chr5 140148164 140148301 -12388958 - B1F1 SINE Alu -10 139 1 4 1654 30 0 0 0 chr5 140149075 140149105 -12388154 + AT_rich Low_complexity Low_complexity 1 30 0 4 1654 222 209 0 56 chr5 140150111 140150182 -12387077 + CT-rich Low_complexity Low_complexity 4 70 0 4 1654 227 251 107 26 chr5 140153288 140153389 -12383870 + MIRc SINE MIR 20 138 -138 4 1654 788 244 71 88 chr5 140153594 140153891 -12383368 + B4 SINE B4 1 292 0 4 1654 226 185 17 85 chr5 140154390 140154449 -12382810 - MLT1E1A LTR MaLR -74 606 552 4 1654 794 157 48 35 chr5 140155494 140155625 -12381634 + B1_Mur2 SINE Alu 1 138 -11 4 1654 191 36 36 0 chr5 140155625 140155653 -12381606 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1654 794 157 48 35 chr5 140155653 140155666 -12381593 + B1_Mur2 SINE Alu 139 147 -2 4 1654 1500 41 13 0 chr5 140156159 140156660 -12380599 + ZP3AR Satellite Satellite 1 507 -1 4 1654 281 242 0 0 chr5 140156707 140156769 -12380490 - B3A SINE B2 -131 67 6 4 1654 270 187 2 0 chr5 140156769 140156819 -12380440 + PB1D7 SINE Alu 17 67 -60 4 1654 247 292 0 0 chr5 140157276 140157341 -12379918 + L2c LINE L2 3098 3162 -225 4 1654 289 192 169 3 chr5 140157488 140157579 -12379680 - B1F SINE Alu -18 131 11 4 1654 360 0 0 0 chr5 140158374 140158414 -12378845 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1654 183 100 0 0 chr5 140158688 140158718 -12378541 + (GGA)n Simple_repeat Simple_repeat 3 32 0 4 1654 369 215 11 48 chr5 140158900 140159086 -12378173 + GA-rich Low_complexity Low_complexity 1 179 0 4 1654 316 246 0 0 chr5 140161131 140161200 -12376059 + MIRm SINE MIR 75 143 -133 4 1654 195 273 62 38 chr5 140161627 140161707 -12375552 + MIR3 SINE MIR 77 158 -50 4 1654 855 143 0 0 chr5 140162053 140162186 -12375073 - B1_Mur1 SINE Alu -7 142 10 4 1654 393 319 61 78 chr5 140162186 140162223 -12375036 - B4 SINE B4 -63 195 53 4 1654 232 234 62 49 chr5 140162214 140162295 -12374964 + B4A SINE B4 85 166 -126 4 1654 768 262 21 5 chr5 140162262 140162459 -12374800 + ID_B1 SINE B4 39 244 -48 4 1654 189 192 94 24 chr5 140163937 140164001 -12373258 - MIRm SINE MIR -110 158 101 4 1654 226 292 66 0 chr5 140165551 140165657 -12371602 + (TGGA)n Simple_repeat Simple_repeat 3 115 0 4 1654 578 157 0 17 chr5 140165672 140165789 -12371470 + (TGGG)n Simple_repeat Simple_repeat 3 117 0 4 1654 936 185 15 0 chr5 140165819 140166092 -12371167 + (TGGA)n Simple_repeat Simple_repeat 1 277 0 4 1654 386 242 25 0 chr5 140166136 140166297 -12370962 + (TGGA)n Simple_repeat Simple_repeat 3 167 0 4 1654 232 240 0 0 chr5 140166313 140166363 -12370896 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 4 1654 399 229 0 0 chr5 140167180 140167263 -12369996 - PB1D10 SINE Alu -12 105 23 4 1654 403 329 84 0 chr5 140167190 140167345 -12369914 - ID_B1 SINE B4 -48 176 9 4 1654 311 136 17 0 chr5 140167424 140167483 -12369776 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1654 831 255 162 8 chr5 140167501 140167754 -12369505 - B4A SINE B4 0 292 1 4 1654 831 111 35 7 chr5 140167828 140167973 -12369286 + URR1A DNA MER1_type 78 226 0 4 1654 387 0 0 0 chr5 140168644 140168687 -12368572 + (TG)n Simple_repeat Simple_repeat 1 43 0 4 1654 183 42 0 0 chr5 140168858 140168882 -12368377 + (CA)n Simple_repeat Simple_repeat 1 24 0 4 1654 247 271 77 30 chr5 140169260 140169417 -12367842 - L2b LINE L2 -266 3121 2957 4 1654 1837 117 30 3 chr5 140169577 140169878 -12367381 + ORR1B2 LTR MaLR 59 367 0 4 1654 2339 77 51 6 chr5 140171749 140172062 -12365197 - ORR1A2 LTR MaLR 0 327 1 4 1654 528 16 0 0 chr5 140172619 140172680 -12364579 + (TCCC)n Simple_repeat Simple_repeat 2 62 0 4 1654 615 290 135 15 chr5 140172871 140173188 -12364071 - ORR1E LTR MaLR -1 369 1 4 1654 323 281 89 19 chr5 140174003 140174108 -12363151 + PB1D10 SINE Alu 1 116 -1 4 1654 1004 131 0 27 chr5 140174633 140174782 -12362477 + B1_Mur4 SINE Alu 5 149 -1 4 1654 566 214 90 0 chr5 140174804 140174949 -12362310 + RSINE1 SINE B4 5 162 -3 4 1654 207 0 0 0 chr5 140175049 140175072 -12362187 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1654 751 199 0 30 chr5 140175079 140175235 -12362024 - B1_Mur4 SINE Alu 0 150 3 4 1654 361 200 14 0 chr5 140175261 140175331 -12361928 + ZP3AR Satellite Satellite 25 95 -117 4 1654 381 259 12 0 chr5 140175331 140175412 -12361847 + ID4_ SINE ID 1 82 -1 4 1654 1529 44 2 0 chr5 140175708 140175986 -12361273 - ZP3AR Satellite Satellite -91 278 1 4 1654 733 220 0 0 chr5 140176073 140176214 -12361045 - RSINE1 SINE B4 -19 146 6 4 1654 369 0 0 0 chr5 140178287 140178328 -12358931 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1654 196 233 54 75 chr5 140178883 140178976 -12358283 + MIR SINE MIR 48 138 -70 4 1654 1639 149 51 3 chr5 140179175 140179469 -12357790 - MTC LTR MaLR -8 413 106 4 1654 654 215 15 8 chr5 140179469 140179600 -12357659 + B1_Mus1 SINE Alu 1 132 -16 4 1654 376 123 321 0 chr5 140179589 140179670 -12357589 - B1_Mm SINE Alu -37 110 4 4 1654 491 136 0 36 chr5 140179672 140179756 -12357503 - MTC LTR MaLR -340 81 1 4 1654 5717 158 40 75 chr5 140179762 140180777 -12356482 - MTC-int LTR MaLR -13 1245 252 4 1654 1284 34 0 0 chr5 140180777 140180924 -12356335 - B1_Mus2 SINE Alu 0 147 1 4 1654 5717 158 40 75 chr5 140180924 140181169 -12356090 - MTC-int LTR MaLR -1007 251 28 4 1654 1391 141 181 4 chr5 140181186 140181456 -12355803 - MTC LTR MaLR 0 421 104 4 1654 717 132 78 0 chr5 140181460 140181589 -12355670 + B1_Mus2 SINE Alu 9 147 0 4 1654 521 152 133 0 chr5 140181611 140181716 -12355543 - MTC LTR MaLR -302 119 1 4 1654 1019 281 33 110 chr5 140182010 140182187 -12355072 + MTE2a LTR MaLR 6 180 -199 4 1654 1053 93 0 28 chr5 140182187 140182330 -12354929 + B1_Mus1 SINE Alu 1 139 -9 4 1654 1019 281 33 110 chr5 140182330 140182544 -12354715 + MTE2a LTR MaLR 181 367 -12 4 1654 537 237 66 7 chr5 140183523 140183659 -12353600 + B1F SINE Alu 1 144 -5 4 1654 1579 32 0 2 chr5 140183693 140184128 -12353131 + ZP3AR Satellite Satellite 1 433 0 4 1654 235 235 132 0 chr5 140184131 140184199 -12353060 + ID4 SINE ID 1 77 -6 4 1654 733 249 66 20 chr5 140184345 140184542 -12352717 + B3 SINE B2 1 206 -10 4 1654 227 340 67 33 chr5 140185173 140185363 -12351896 - MIR SINE MIR -40 228 31 4 1654 207 368 47 0 chr5 140188432 140188538 -12348721 + MIRm SINE MIR 50 160 -116 4 1654 384 263 35 116 chr5 140190021 140190065 -12347194 + MT2B LTR ERVL 128 168 -433 4 1654 1590 47 5 5 chr5 140190065 140190259 -12347000 + B2_Mm2 SINE B2 2 195 0 4 1654 384 263 35 116 chr5 140190259 140190386 -12346873 + MT2B LTR ERVL 169 285 -316 4 1654 800 158 0 48 chr5 140190264 140190410 -12346849 + B1_Mus2 SINE Alu 9 147 0 4 1654 316 282 136 0 chr5 140190494 140190624 -12346635 + ID_B1 SINE B4 82 226 -66 4 1654 613 261 12 31 chr5 140190627 140190789 -12346470 + RSINE1 SINE B4 3 161 -4 4 1654 1510 40 19 0 chr5 140190818 140191108 -12346151 + ZP3AR Satellite Satellite 1 295 -1 4 1654 429 245 10 0 chr5 140191066 140191168 -12346091 + BC1_Mm scRNA scRNA 1 103 -49 4 1654 297 75 0 0 chr5 140192112 140192152 -12345107 + (CTGGGG)n Simple_repeat Simple_repeat 1 40 0 4 1654 242 239 14 40 chr5 140193985 140194059 -12343200 + MIRc SINE MIR 111 182 -86 4 1654 429 197 0 0 chr5 140195559 140195630 -12341629 - ID4 SINE ID -9 74 4 4 1654 590 87 11 19 chr5 140195634 140195747 -12341512 - ZP3AR Satellite Satellite -65 147 12 4 1654 361 273 44 36 chr5 140195761 140195898 -12341361 + B1F SINE Alu 12 149 0 4 1654 1502 57 2 0 chr5 140195900 140196217 -12341042 + ZP3AR Satellite Satellite 1 317 -106 4 1654 397 229 0 12 chr5 140196217 140196301 -12340958 + ID4_ SINE ID 1 83 0 4 1654 540 320 24 19 chr5 140196982 140197192 -12340067 - B4A SINE B4 -51 241 31 4 1654 487 126 188 10 chr5 140198012 140198108 -12339151 + B1_Mus2 SINE Alu 34 146 -1 4 1654 207 0 0 0 chr5 140198134 140198157 -12339102 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 4 1654 808 193 28 0 chr5 140198170 140198315 -12338944 + B1_Mur2 SINE Alu 1 149 0 4 1654 427 243 146 56 chr5 140199571 140199715 -12337544 - RSINE1 SINE B4 -1 164 8 4 1654 539 313 55 113 chr5 140199770 140199887 -12337372 - B4A SINE B4 0 292 198 4 1654 1259 35 0 0 chr5 140199887 140200032 -12337227 - B1_Mus2 SINE Alu 0 147 3 4 1654 539 313 55 113 chr5 140200032 140200224 -12337035 - B4A SINE B4 -95 197 1 4 1654 185 154 0 25 chr5 140200224 140200264 -12336995 + CT-rich Low_complexity Low_complexity 1 39 0 4 1654 242 316 13 0 chr5 140200264 140200340 -12336919 - ID4_ SINE ID -6 77 1 4 1654 390 42 0 0 chr5 140201555 140201603 -12335656 + (TTA)n Simple_repeat Simple_repeat 1 48 0 4 1654 547 307 0 26 chr5 140201621 140201775 -12335484 - RSINE1 SINE B4 -15 150 1 4 1654 678 117 71 48 chr5 140201834 140201960 -12335299 - B1_Mus2 SINE Alu 0 147 19 4 1654 1413 66 49 0 chr5 140201966 140202149 -12335110 - B2_Mm2 SINE B2 -2 193 2 4 1654 955 212 45 10 chr5 140202156 140202356 -12334903 - B3 SINE B2 -1 215 9 4 1654 455 299 22 14 chr5 140202364 140202503 -12334756 - ID_B1 SINE B4 0 224 85 4 1654 1773 189 66 44 chr5 140202650 140202813 -12334446 + MTD LTR MaLR 1 170 -249 4 1654 366 23 0 0 chr5 140202813 140202856 -12334403 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1654 1773 189 66 44 chr5 140202856 140203038 -12334221 + MTD LTR MaLR 171 362 -57 4 1654 1848 171 57 25 chr5 140203038 140203404 -12333855 + ORR1C1 LTR MaLR 1 378 0 4 1654 1773 189 66 44 chr5 140203404 140203467 -12333792 + MTD LTR MaLR 363 419 0 4 1654 483 173 0 0 chr5 140203467 140203548 -12333711 - ID_B1 SINE B4 -56 168 88 4 1654 1269 107 141 10 chr5 140203833 140204032 -12333227 + URR1A DNA MER1_type 1 225 -1 4 1654 410 282 91 17 chr5 140204238 140204450 -12332809 + RMER20B LTR ERVK 197 425 -91 4 1654 243 0 0 0 chr5 140204677 140204704 -12332555 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1654 647 208 92 118 chr5 140205023 140205252 -12332007 + B4 SINE B4 1 223 -69 5 1654 1024 84 0 0 chr5 140205112 140205255 -12332004 + B1_Mus1 SINE Alu 6 148 0 5 1654 684 246 14 0 chr5 140205262 140205404 -12331855 + B4 SINE B4 81 224 -68 5 1654 1116 202 9 9 chr5 140205406 140205616 -12331643 + B3 SINE B2 1 210 -6 5 1654 23 0 0 0 chr5 140205618 140205641 -12331618 + AT_rich Low_complexity Low_complexity 1 23 0 5 1654 405 86 0 0 chr5 140205772 140205830 -12331429 + (CA)n Simple_repeat Simple_repeat 1 58 0 5 1654 414 274 26 151 chr5 140205832 140206064 -12331195 + MLT1B LTR MaLR 51 253 -137 5 1654 284 181 81 27 chr5 140206131 140206205 -12331054 - ID4_ SINE ID -2 81 4 5 1654 246 315 209 35 chr5 140206223 140206338 -12330921 - B1F SINE Alu -11 138 4 5 1654 1300 261 11 7 chr5 140206372 140206654 -12330605 - B4 SINE B4 -9 283 1 5 1654 446 252 66 15 chr5 140207648 140207759 -12329500 + B1F SINE Alu 4 115 -34 5 1654 504 0 0 0 chr5 140207759 140207815 -12329444 + (TA)n Simple_repeat Simple_repeat 2 57 0 5 1654 446 252 66 15 chr5 140207815 140207840 -12329419 + B1F SINE Alu 116 146 -3 5 1654 797 231 16 37 chr5 140207870 140208059 -12329200 + ID_B1 SINE B4 40 224 0 5 1654 377 241 167 0 chr5 140208063 140208171 -12329088 + B1F2 SINE Alu 11 136 -13 5 1654 739 154 7 44 chr5 140208198 140208334 -12328925 + B1_Mus2 SINE Alu 4 134 -13 5 1654 258 105 0 0 chr5 140208336 140208374 -12328885 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5 1654 324 83 0 0 chr5 140208592 140208640 -12328619 + (GGCTG)n Simple_repeat Simple_repeat 4 51 0 5 1654 411 68 0 0 chr5 140209278 140209337 -12327922 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1654 613 225 0 35 chr5 140209360 140209503 -12327756 - RSINE1 SINE B4 -25 140 3 5 1654 1130 163 43 85 chr5 140209575 140209810 -12327449 - URR1B DNA MER1_type 0 225 1 5 1654 200 290 0 0 chr5 140210435 140210497 -12326762 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 5 1654 258 331 56 68 chr5 140210975 140211137 -12326122 + MIR3 SINE MIR 13 172 -36 5 1654 908 254 4 31 chr5 140212557 140212784 -12324475 - ID_B1 SINE B4 0 224 4 5 1654 936 225 28 9 chr5 140212803 140213014 -12324245 - B3 SINE B2 0 216 2 5 1654 222 197 155 0 chr5 140213042 140213113 -12324146 - PB1D10 SINE Alu 0 117 36 5 1654 600 248 0 0 chr5 140213255 140213388 -12323871 + ID_B1 SINE B4 83 215 -9 5 1654 1081 95 13 20 chr5 140213621 140213772 -12323487 - B1_Mur4 SINE Alu 0 150 1 5 1654 1373 80 21 16 chr5 140215014 140215204 -12322055 + B2_Mm2 SINE B2 2 192 -3 5 1654 267 271 9 18 chr5 140215388 140215497 -12321762 + (CAGAGA)n Simple_repeat Simple_repeat 2 109 0 5 1654 309 284 0 12 chr5 140215530 140215612 -12321647 + B3 SINE B2 38 118 -98 5 1654 1127 83 14 0 chr5 140215636 140215781 -12321478 - B1_Mus1 SINE Alu 0 148 2 5 1654 894 222 18 58 chr5 140215809 140215966 -12321293 + B3 SINE B2 1 150 -66 5 1654 2501 172 163 6 chr5 140215966 140216463 -12320796 - RMER15 LTR ERVL 0 575 1 5 1654 894 222 18 58 chr5 140216463 140216530 -12320729 + B3 SINE B2 151 216 0 5 1654 1205 91 46 46 chr5 140216531 140216726 -12320533 + B2_Mm2 SINE B2 1 195 0 5 1654 24 0 0 0 chr5 140216726 140216750 -12320509 + AT_rich Low_complexity Low_complexity 1 24 0 5 1654 217 255 0 0 chr5 140216925 140216972 -12320287 - MER91C DNA Tip100 -82 58 12 5 1654 443 190 119 10 chr5 140217530 140217631 -12319628 - PB1D7 SINE Alu 0 120 9 5 1654 198 103 0 0 chr5 140217655 140217684 -12319575 + (TTG)n Simple_repeat Simple_repeat 2 30 0 5 1654 1269 78 43 27 chr5 140217711 140217895 -12319364 - B2_Mm2 SINE B2 -7 188 2 5 1654 906 166 7 7 chr5 140217912 140218052 -12319207 + B1_Mur2 SINE Alu 1 140 -9 5 1654 186 71 0 0 chr5 140218054 140218082 -12319177 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 5 1654 637 245 64 21 chr5 140218100 140218288 -12318971 - B3A SINE B2 -1 197 2 5 1654 249 304 19 19 chr5 140218723 140218827 -12318432 + L2a LINE L2 3061 3164 -262 5 1654 3385 28 23 0 chr5 140218845 140219232 -12318027 - MTA_Mm LTR MaLR 0 396 1 5 1654 9240 41 4 1 chr5 140219232 140220327 -12316932 - MTA_Mm-int LTR MaLR 0 1098 1 5 1654 3431 46 2 0 chr5 140220327 140220722 -12316537 - MTA_Mm LTR MaLR 0 396 1 5 1654 240 200 11 23 chr5 140221011 140221098 -12316161 + (TG)n Simple_repeat Simple_repeat 1 86 0 5 1654 479 119 51 40 chr5 140221111 140221286 -12315973 + (TG)n Simple_repeat Simple_repeat 1 177 0 5 1654 271 320 104 0 chr5 140221424 140221549 -12315710 - L2c LINE L2 -225 3162 3025 5 1654 436 202 112 0 chr5 140221837 140221972 -12315287 + B3A SINE B2 1 169 -47 5 1654 882 138 0 15 chr5 140225303 140225435 -12311824 + B1_Mus1 SINE Alu 1 130 -18 5 1654 423 0 0 0 chr5 140225436 140225483 -12311776 + (TG)n Simple_repeat Simple_repeat 2 48 0 5 1654 189 171 0 0 chr5 140229295 140229330 -12307929 + (CA)n Simple_repeat Simple_repeat 2 36 0 5 1654 382 277 5 53 chr5 140229722 140229909 -12307350 + G-rich Low_complexity Low_complexity 2 179 0 5 1654 713 188 161 62 chr5 140230260 140230453 -12306806 - B3 SINE B2 -4 212 1 5 1654 348 256 23 11 chr5 140230482 140230569 -12306690 - PB1D10 SINE Alu -29 88 1 5 1654 278 50 0 24 chr5 140234791 140234832 -12302427 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1654 936 145 20 7 chr5 140236263 140236409 -12300850 + B1_Mus1 SINE Alu 1 148 0 5 1654 481 208 135 8 chr5 140239143 140239269 -12297990 - B1F SINE Alu -7 142 1 5 1654 1461 63 11 0 chr5 140239551 140239860 -12297399 + ZP3AR Satellite Satellite 1 312 -1 5 1654 529 199 134 42 chr5 140242693 140242835 -12294424 + RSINE1 SINE B4 9 163 -2 5 1654 297 0 0 0 chr5 140242916 140242949 -12294310 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1654 523 285 36 87 chr5 140242952 140243040 -12294219 + ID SINE ID 4 81 -143 5 1654 397 262 47 39 chr5 140243040 140243167 -12294092 + B1_Mur1 SINE Alu 1 128 -21 5 1655 1565 69 5 0 chr5 140248942 140249315 -12287944 - ZP3AR Satellite Satellite -63 374 1 5 1655 327 249 26 78 chr5 140249316 140249433 -12287826 - PB1D10 SINE Alu -1 116 14 5 1655 242 280 12 47 chr5 140249674 140249760 -12287499 + ID4 SINE ID 1 83 0 5 1655 278 364 64 105 chr5 140250642 140250770 -12286489 - MIRb SINE MIR -9 259 123 5 1655 1186 61 0 0 chr5 140250770 140250917 -12286342 + B1_Mus1 SINE Alu 2 148 0 5 1655 278 364 64 105 chr5 140250917 140251055 -12286204 - MIRb SINE MIR -146 122 4 5 1655 781 52 259 0 chr5 140251860 140251976 -12285283 + B1_Mus1 SINE Alu 1 146 -2 5 1655 234 242 0 0 chr5 140252242 140252308 -12284951 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1655 599 193 0 26 chr5 140252804 140252921 -12284338 + PB1D9 SINE Alu 7 120 0 5 1655 273 372 36 0 chr5 140252921 140252941 -12284318 + B4A SINE B4 92 233 -59 5 1655 930 145 7 14 chr5 140253717 140253864 -12283395 - B1_Mus2 SINE Alu -1 146 1 5 1655 27 0 0 0 chr5 140253864 140253891 -12283368 + AT_rich Low_complexity Low_complexity 1 27 0 5 1655 302 282 146 0 chr5 140253892 140254002 -12283257 + B4 SINE B4 79 204 -88 5 1655 706 97 26 9 chr5 140253910 140254024 -12283235 + B1_Mur2 SINE Alu 21 136 -13 5 1655 212 184 0 0 chr5 140254121 140254159 -12283100 - B3 SINE B2 -178 38 1 5 1655 1313 102 43 0 chr5 140254165 140254351 -12282908 - B2_Mm2 SINE B2 -1 194 1 5 1655 229 303 26 13 chr5 140254382 140254459 -12282800 - ID_B1 SINE B4 -66 158 81 5 1655 465 269 50 43 chr5 140254501 140254641 -12282618 + MT2B LTR ERVL 2 142 -391 5 1655 907 156 14 14 chr5 140254676 140254819 -12282440 - B1_Mur4 SINE Alu -7 143 1 5 1655 342 0 0 0 chr5 140254853 140254891 -12282368 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1655 973 78 0 0 chr5 140254891 140255020 -12282239 - B1_Mus1 SINE Alu -8 140 12 5 1655 1577 58 5 0 chr5 140255020 140255211 -12282048 + B2_Mm1a SINE B2 2 193 0 5 1655 963 257 24 105 chr5 140255229 140255501 -12281758 + MT2B LTR ERVL 260 518 -83 5 1655 2224 96 63 0 chr5 140255501 140255804 -12281455 + ORR1A3 LTR MaLR 5 326 0 5 1655 963 257 24 105 chr5 140255804 140255901 -12281358 + MT2B LTR ERVL 519 599 -2 5 1655 254 278 108 34 chr5 140256046 140256212 -12281047 + MIRm SINE MIR 8 192 -84 5 1655 180 311 98 22 chr5 140256160 140256252 -12281007 - MIR3 SINE MIR -107 101 3 5 1655 526 236 45 0 chr5 140256502 140256612 -12280647 + PB1D10 SINE Alu 1 115 -2 5 1655 1400 49 32 26 chr5 140256741 140256931 -12280328 + B2_Mm2 SINE B2 5 195 0 5 1655 499 174 33 0 chr5 140256942 140257034 -12280225 + ZP3AR Satellite Satellite 43 137 -75 5 1655 1036 126 66 0 chr5 140257047 140257214 -12280045 + B2_Mm1a SINE B2 2 179 -14 5 1655 382 127 0 5 chr5 140257242 140257307 -12279952 + B2_Mm2 SINE B2 47 109 -107 5 1655 847 191 153 0 chr5 140257966 140258149 -12279110 - B3 SINE B2 0 216 6 5 1655 600 14 0 0 chr5 140258166 140258235 -12279024 + (TC)n Simple_repeat Simple_repeat 1 69 0 5 1655 275 246 31 0 chr5 140258282 140258347 -12278912 - B4 SINE B4 -4 288 222 5 1655 960 161 0 0 chr5 140258373 140258516 -12278743 + B1_Mur4 SINE Alu 1 143 -7 5 1655 1066 116 0 7 chr5 140258543 140258691 -12278568 + B1_Mus1 SINE Alu 2 148 0 5 1655 789 254 46 41 chr5 140258715 140258912 -12278347 - B3A SINE B2 0 198 1 5 1655 465 205 107 57 chr5 140258913 140259053 -12278206 - B1_Mm SINE Alu 0 147 1 5 1655 207 0 0 0 chr5 140259189 140259212 -12278047 + (TG)n Simple_repeat Simple_repeat 2 24 0 5 1655 348 312 63 105 chr5 140259265 140259305 -12277954 - B4A SINE B4 -16 276 239 5 1655 1211 61 0 0 chr5 140259305 140259452 -12277807 + B1_Mus1 SINE Alu 2 148 0 5 1655 201 39 0 0 chr5 140259455 140259481 -12277778 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 6 1655 348 312 63 105 chr5 140259481 140259722 -12277537 - B4A SINE B4 -54 238 3 5 1655 252 163 0 58 chr5 140259728 140259780 -12277479 - ID_B1 SINE B4 -2 222 174 6 1655 288 192 0 0 chr5 140259734 140259786 -12277473 - PB1D10 SINE Alu -8 109 58 6 1655 609 234 42 118 chr5 140259786 140259931 -12277328 + MT2A LTR ERVL 1 207 -286 6 1655 710 147 8 8 chr5 140259931 140260048 -12277211 - B1_Mus1 SINE Alu -9 139 23 6 1655 609 234 42 118 chr5 140260048 140260100 -12277159 + MT2A LTR ERVL 208 284 -209 6 1655 216 0 0 0 chr5 140260140 140260164 -12277095 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1655 405 0 0 0 chr5 140260312 140260357 -12276902 + (GA)n Simple_repeat Simple_repeat 1 45 0 6 1655 307 183 183 0 chr5 140260703 140260763 -12276496 + ID4 SINE ID 3 73 -10 6 1655 336 154 15 15 chr5 140260765 140260831 -12276428 + ID_B1 SINE B4 122 187 -37 6 1655 792 294 68 56 chr5 140260808 140261235 -12276024 - RMER15 LTR ERVL -52 523 1 6 1655 344 136 27 0 chr5 140261249 140261324 -12275935 + B1F SINE Alu 35 119 -1 6 1655 714 258 25 0 chr5 140261328 140261487 -12275772 + RSINE1 SINE B4 3 165 0 6 1655 543 214 27 9 chr5 140261487 140261829 -12275430 + (CA)n Simple_repeat Simple_repeat 1 348 0 6 1655 234 0 0 0 chr5 140261839 140261865 -12275394 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 6 1655 525 16 0 0 chr5 140262097 140262159 -12275100 + (TG)n Simple_repeat Simple_repeat 1 62 0 6 1655 333 0 0 0 chr5 140262159 140262195 -12275064 + (GA)n Simple_repeat Simple_repeat 1 37 0 6 1655 896 252 66 80 chr5 140262208 140262497 -12274762 - B4A SINE B4 -5 287 3 6 1655 730 184 179 0 chr5 140262614 140262782 -12274477 - ID_B1 SINE B4 -21 203 6 6 1655 216 277 92 0 chr5 140263842 140263907 -12273352 + B1F2 SINE Alu 2 72 -77 6 1655 429 236 34 0 chr5 140263907 140263996 -12273263 - PB1D10 SINE Alu -16 101 10 6 1655 252 271 0 79 chr5 140263944 140264020 -12273239 - B4A SINE B4 -146 146 77 6 1655 380 345 56 48 chr5 140264012 140264207 -12273052 - B4 SINE B4 0 292 92 6 1655 1182 69 109 44 chr5 140264207 140264235 -12273024 - B2_Mm2 SINE B2 0 195 173 6 1655 1706 31 0 0 chr5 140264235 140264427 -12272832 + B2_Mm1a SINE B2 2 193 0 6 1655 1182 69 109 44 chr5 140264427 140264581 -12272678 - B2_Mm2 SINE B2 -23 172 1 6 1655 851 236 28 42 chr5 140264584 140264753 -12272506 - B3 SINE B2 -2 214 42 6 1655 591 15 0 0 chr5 140264753 140264821 -12272438 + (GA)n Simple_repeat Simple_repeat 2 69 0 6 1655 851 236 28 42 chr5 140264821 140264868 -12272391 - B3 SINE B2 -175 41 1 6 1655 380 345 56 48 chr5 140264868 140264918 -12272341 - B4 SINE B4 -201 91 45 6 1655 698 164 66 15 chr5 140264938 140265074 -12272185 - B1_Mur2 SINE Alu 0 149 7 6 1655 204 37 0 0 chr5 140265080 140265090 -12272169 + (T)n Simple_repeat Simple_repeat 1 10 0 6 1655 1205 48 0 45 chr5 140265090 140265244 -12272015 - B1_Mm SINE Alu 0 147 1 6 1655 204 37 0 0 chr5 140265244 140265260 -12271999 + (T)n Simple_repeat Simple_repeat 1 16 0 6 1655 2371 94 22 0 chr5 140266121 140266441 -12270818 + ORR1A2 LTR MaLR 1 327 0 6 1655 615 113 17 17 chr5 140266456 140266573 -12270686 + (AGGGGG)n Simple_repeat Simple_repeat 1 117 0 6 1655 584 262 110 0 chr5 140266627 140266772 -12270487 + RSINE1 SINE B4 5 165 0 6 1655 23 54 0 0 chr5 140266783 140266820 -12270439 + AT_rich Low_complexity Low_complexity 1 37 0 6 1655 246 135 0 148 chr5 140266822 140266883 -12270376 + B1F SINE Alu 98 149 0 6 1655 25 0 0 0 chr5 140267635 140267660 -12269599 + GC_rich Low_complexity Low_complexity 1 25 0 6 1655 672 213 22 0 chr5 140268681 140268817 -12268442 + B1F SINE Alu 10 148 -1 6 1655 352 218 92 0 chr5 140270317 140270404 -12266855 + PB1D7 SINE Alu 23 117 -3 6 1655 627 278 46 8 chr5 140270404 140270591 -12266668 + B4 SINE B4 2 220 -72 6 1655 703 217 0 8 chr5 140270602 140270732 -12266527 + RSINE1 SINE B4 6 134 -31 6 1655 447 35 0 0 chr5 140270742 140270799 -12266460 + (CA)n Simple_repeat Simple_repeat 2 58 0 6 1655 342 208 42 0 chr5 140272094 140272166 -12265093 - B1F SINE Alu -21 128 54 6 1655 1085 174 4 64 chr5 140274758 140274992 -12262267 + URR1B DNA MER1_type 1 220 -5 6 1655 22 0 0 0 chr5 140277713 140277735 -12259524 + AT_rich Low_complexity Low_complexity 1 22 0 6 1655 756 250 120 0 chr5 140279024 140279208 -12258051 + B4 SINE B4 4 209 -83 6 1655 255 355 24 47 chr5 140279097 140279224 -12258035 + B1F2 SINE Alu 14 137 -12 6 1655 350 270 104 109 chr5 140279431 140279614 -12257645 + B4A SINE B4 111 292 0 6 1655 240 35 0 0 chr5 140283272 140283301 -12253958 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1655 673 219 123 6 chr5 140283314 140283484 -12253775 - ID_B1 SINE B4 -22 202 13 6 1655 248 260 0 0 chr5 140284204 140284254 -12253005 + (TG)n Simple_repeat Simple_repeat 2 51 0 6 1655 334 304 21 21 chr5 140284754 140284848 -12252411 + B4A SINE B4 1 94 -198 6 1655 351 0 0 0 chr5 140284853 140284892 -12252367 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1655 270 282 28 0 chr5 140284900 140284971 -12252288 + ID4_ SINE ID 1 73 -10 6 1655 608 48 0 12 chr5 140284999 140285084 -12252175 + (TA)n Simple_repeat Simple_repeat 2 85 0 6 1655 678 223 0 0 chr5 140285108 140285229 -12252030 - B1_Mur1 SINE Alu -27 122 2 6 1655 584 309 36 20 chr5 140285229 140285304 -12251955 - ID SINE ID -145 79 2 6 1655 264 182 227 0 chr5 140285318 140285384 -12251875 + ID4 SINE ID 1 81 -2 6 1655 715 214 131 6 chr5 140285438 140285598 -12251661 - B3A SINE B2 -18 180 1 6 1655 672 292 49 29 chr5 140285657 140285900 -12251359 - B4 SINE B4 -36 256 9 6 1655 1146 89 0 0 chr5 140285932 140286090 -12251169 + B2_Mm2 SINE B2 1 158 -37 6 1655 306 0 0 0 chr5 140286092 140286126 -12251133 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 6 1655 864 165 120 78 chr5 140286271 140286363 -12250896 + URR1A DNA MER1_type 1 114 -112 6 1655 1111 62 7 7 chr5 140286363 140286508 -12250751 + B1_Mus2 SINE Alu 1 145 -2 6 1655 864 165 120 78 chr5 140286508 140286632 -12250627 + URR1A DNA MER1_type 115 225 -1 6 1655 276 30 0 0 chr5 140286746 140286779 -12250480 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 6 1655 232 247 104 73 chr5 140286860 140286956 -12250303 + L1M5 LINE L1 5614 5712 -412 6 1655 1033 206 67 5 chr5 140287174 140287384 -12249875 + ID_B1 SINE B4 2 224 0 6 1655 369 0 0 0 chr5 140287539 140287580 -12249679 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1655 270 0 0 0 chr5 140287776 140287806 -12249453 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1655 252 179 96 0 chr5 140287929 140288017 -12249242 + MIR SINE MIR 60 156 -52 6 1655 395 245 20 85 chr5 140289558 140289722 -12247537 + PB1D10 SINE Alu 1 149 -1 6 1655 247 279 0 0 chr5 140289804 140289872 -12247387 + C-rich Low_complexity Low_complexity 1 68 0 6 1655 331 259 105 83 chr5 140290468 140290649 -12246610 + CYRA11_Mm Unknown Y-chromosome 160 344 -273 6 1655 939 177 16 39 chr5 140290515 140290697 -12246562 - URR1B DNA MER1_type -47 178 1 6 1655 1181 188 22 18 chr5 140290771 140290980 -12246279 + ID_B1 SINE B4 2 213 -11 6 1655 252 0 0 0 chr5 140290980 140291008 -12246251 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 6 1655 1181 188 22 18 chr5 140291008 140291020 -12246239 + ID_B1 SINE B4 214 224 0 6 1655 350 291 85 23 chr5 140291046 140291176 -12246083 + B1F SINE Alu 1 138 -11 6 1655 1404 55 20 5 chr5 140291177 140291413 -12245846 + ZP3AR Satellite Satellite 1 239 -1 6 1655 384 197 53 0 chr5 140291413 140291489 -12245770 + ID4_ SINE ID 1 80 -3 6 1655 1404 53 19 10 chr5 140291489 140291501 -12245758 + ZP3AR Satellite Satellite 202 212 0 6 1655 519 17 0 0 chr5 140291736 140291796 -12245463 + (TG)n Simple_repeat Simple_repeat 2 61 0 6 1655 215 284 93 6 chr5 140292800 140292922 -12244337 + MIR SINE MIR 46 174 -94 6 1655 243 0 0 0 chr5 140292944 140292971 -12244288 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 6 1655 239 301 41 0 chr5 140293058 140293131 -12244128 + MIRb SINE MIR 120 195 -73 6 1655 1185 50 0 0 chr5 140293131 140293272 -12243987 + B1_Mus2 SINE Alu 1 141 -6 6 1655 531 45 0 0 chr5 140293274 140293340 -12243919 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 6 1655 813 144 7 28 chr5 140293572 140293715 -12243544 - B1_Mus1 SINE Alu 0 148 9 6 1655 283 143 0 39 chr5 140296420 140296471 -12240788 + RSINE1 SINE B4 3 51 -114 6 1655 342 0 0 0 chr5 140296881 140296919 -12240340 + (TC)n Simple_repeat Simple_repeat 1 38 0 6 1655 212 186 0 17 chr5 140296926 140296986 -12240273 + CT-rich Low_complexity Low_complexity 4 62 0 6 1655 324 224 69 23 chr5 140297019 140297106 -12240153 - B4A SINE B4 -178 114 24 6 1655 21 0 0 0 chr5 140299574 140299595 -12237664 + AT_rich Low_complexity Low_complexity 1 21 0 6 1655 208 207 0 33 chr5 140300079 140300093 -12237166 + T-rich Low_complexity Low_complexity 46 58 0 6 1655 1190 75 0 0 chr5 140300093 140300240 -12237019 - B1_Mus2 SINE Alu 0 147 1 6 1655 208 207 0 33 chr5 140300240 140300255 -12237004 + T-rich Low_complexity Low_complexity 31 45 0 6 1655 624 194 70 21 chr5 140300255 140300397 -12236862 - B1F SINE Alu 0 149 1 6 1655 208 207 0 33 chr5 140300397 140300426 -12236833 + T-rich Low_complexity Low_complexity 2 30 0 6 1655 548 281 169 24 chr5 140300429 140300611 -12236648 - B4 SINE B4 0 292 88 6 1655 447 261 46 60 chr5 140300611 140300762 -12236497 - B1_Mur2 SINE Alu 0 149 1 6 1655 548 281 169 24 chr5 140300762 140300834 -12236425 - B4 SINE B4 -205 87 2 6 1655 338 281 13 66 chr5 140300865 140301014 -12236245 - PB1D9 SINE Alu 0 149 15 6 1655 228 123 61 15 chr5 140301064 140301130 -12236129 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 1655 330 342 100 7 chr5 140301132 140301282 -12235977 - RSINE1 SINE B4 0 165 2 6 1655 396 235 130 32 chr5 140301286 140301409 -12235850 - ID_B1 SINE B4 -7 217 83 7 1655 289 329 12 0 chr5 140301480 140301565 -12235694 - PB1D7 SINE Alu -32 88 3 7 1655 455 234 0 18 chr5 140302413 140302522 -12234737 + PB1D10 SINE Alu 1 107 -10 7 1655 34 24 0 0 chr5 140303024 140303065 -12234194 + AT_rich Low_complexity Low_complexity 1 41 0 7 1655 525 165 119 0 chr5 140303144 140303253 -12234006 - B1_Mus2 SINE Alu 0 147 26 7 1655 761 58 10 0 chr5 140303255 140303358 -12233901 + (TCC)n Simple_repeat Simple_repeat 2 105 0 7 1655 551 249 192 0 chr5 140303360 140303537 -12233722 - ID_B1 SINE B4 -6 218 8 7 1655 225 204 0 22 chr5 140303545 140303590 -12233669 + CT-rich Low_complexity Low_complexity 3 46 0 7 1655 767 206 37 31 chr5 140303670 140303861 -12233398 - B3 SINE B2 0 216 25 7 1655 303 343 67 19 chr5 140303917 140303983 -12233276 - L1MA4A LINE L1 -1473 6000 5937 7 1655 405 0 0 0 chr5 140303983 140304028 -12233231 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1655 335 311 39 17 chr5 140304028 140304170 -12233089 - L1MA4A LINE L1 -365 5938 5784 7 1655 285 89 0 0 chr5 140304170 140304215 -12233044 + (TG)n Simple_repeat Simple_repeat 2 46 0 7 1655 201 264 19 0 chr5 140304258 140304311 -12232948 + CT-rich Low_complexity Low_complexity 4 57 0 7 1655 643 212 97 15 chr5 140304312 140304446 -12232813 - B1_Mur1 SINE Alu -1 148 4 7 1655 519 258 77 54 chr5 140304450 140304624 -12232635 - B4 SINE B4 -66 226 46 7 1655 405 0 0 0 chr5 140304624 140304669 -12232590 + (TC)n Simple_repeat Simple_repeat 2 46 0 7 1655 306 0 0 0 chr5 140304669 140304702 -12232557 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1655 519 258 77 54 chr5 140304702 140304747 -12232512 - B4 SINE B4 -247 45 2 7 1655 277 242 84 0 chr5 140304747 140304842 -12232417 - L1MA4A LINE L1 -469 5828 5726 7 1655 257 48 48 0 chr5 140305907 140305949 -12231310 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1655 516 320 96 60 chr5 140306038 140306287 -12230972 + B4 SINE B4 15 272 -20 7 1655 922 163 0 13 chr5 140306443 140306592 -12230667 - B1_Mur2 SINE Alu -2 147 1 7 1655 228 299 39 0 chr5 140306633 140306710 -12230549 + B3A SINE B2 1 80 -118 7 1655 1115 214 100 30 chr5 140306708 140307023 -12230236 + ORR1E LTR MaLR 21 374 0 7 1655 271 236 55 14 chr5 140307071 140307144 -12230115 + B1F SINE Alu 2 77 -72 7 1655 707 240 103 61 chr5 140307182 140307395 -12229864 + ID_B1 SINE B4 1 222 -2 7 1655 835 256 14 14 chr5 140307402 140307612 -12229647 + B3 SINE B2 4 213 -3 7 1655 34 0 0 0 chr5 140307969 140308003 -12229256 + AT_rich Low_complexity Low_complexity 1 34 0 7 1655 374 231 67 9 chr5 140308511 140308616 -12228643 + PB1D10 SINE Alu 1 111 -6 7 1655 1299 315 59 25 chr5 140308616 140309128 -12228131 + MT2A LTR ERVL 5 533 0 7 1655 830 164 0 6 chr5 140309368 140309534 -12227725 + (TGGA)n Simple_repeat Simple_repeat 3 167 0 7 1655 1122 144 154 0 chr5 140309700 140309895 -12227364 - URR1B DNA MER1_type 0 225 1 7 1655 425 103 15 0 chr5 140310127 140310195 -12227064 + (CA)n Simple_repeat Simple_repeat 1 69 0 7 1655 491 238 146 53 chr5 140310195 140310337 -12226922 - RSINE1 SINE B4 -8 157 2 7 1655 316 339 28 0 chr5 140310372 140310481 -12226778 + B1F2 SINE Alu 1 112 -37 7 1655 360 0 0 0 chr5 140310486 140310526 -12226733 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1655 955 120 35 0 chr5 140310544 140310686 -12226573 + B1_Mus1 SINE Alu 2 148 0 7 1655 261 83 0 0 chr5 140310709 140310745 -12226514 + (GGA)n Simple_repeat Simple_repeat 3 38 0 7 1655 304 233 77 11 chr5 140310845 140310936 -12226323 + ZP3AR Satellite Satellite 41 137 -75 7 1655 211 304 76 23 chr5 140310945 140311083 -12226176 - MIR3 SINE MIR -84 184 41 7 1655 226 314 14 0 chr5 140311142 140311212 -12226047 - ID4 SINE ID -11 72 2 7 1655 639 276 0 7 chr5 140311173 140311319 -12225940 - ZP3AR Satellite Satellite -24 188 44 7 1655 551 239 72 7 chr5 140311323 140311462 -12225797 - B1F SINE Alu -1 148 1 7 1655 261 358 11 0 chr5 140311858 140311953 -12225306 + L1M5 LINE L1 5490 5585 -594 7 1655 435 244 0 0 chr5 140311964 140312046 -12225213 - ID4 SINE ID 0 83 2 7 1655 214 204 0 22 chr5 140312058 140312103 -12225156 - ID4_ SINE ID 0 83 40 7 1655 1070 220 101 55 chr5 140312164 140312491 -12224768 + MTE2b LTR MaLR 36 377 -2 7 1655 935 303 42 4 chr5 140312491 140312747 -12224512 + B4 SINE B4 23 288 -4 7 1655 279 151 18 36 chr5 140312765 140312820 -12224439 + L1M3 LINE L1 5654 5707 -464 7 1655 390 74 0 0 chr5 140313062 140313116 -12224143 + (TG)n Simple_repeat Simple_repeat 1 54 0 7 1655 630 183 18 0 chr5 140313257 140313426 -12223833 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 7 1655 300 269 13 13 chr5 140313428 140313536 -12223723 + (TCCA)n Simple_repeat Simple_repeat 1 108 0 7 1655 549 237 17 0 chr5 140313911 140314029 -12223230 + ID_B1 SINE B4 84 203 -21 7 1655 234 62 0 0 chr5 140314052 140314084 -12223175 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1655 648 259 14 0 chr5 140314232 140314371 -12222888 - B1_Mur1 SINE Alu -1 148 8 7 1655 216 0 0 0 chr5 140314666 140314690 -12222569 + (TC)n Simple_repeat Simple_repeat 2 25 0 7 1655 1212 181 29 0 chr5 140314782 140314987 -12222272 - B3 SINE B2 -5 211 1 7 1655 207 88 0 0 chr5 140315028 140315062 -12222197 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 7 1655 629 296 64 0 chr5 140315065 140315237 -12222022 - ID_B1 SINE B4 -13 211 29 7 1655 271 217 56 28 chr5 140315727 140315798 -12221461 - RLTR25B LTR ERVK -505 523 451 7 1655 541 100 38 0 chr5 140315754 140315834 -12221425 - B1_Mus1 SINE Alu -55 93 11 7 1655 322 259 52 19 chr5 140315834 140315848 -12221411 - ID_B1 SINE B4 -43 147 81 7 1655 409 226 103 9 chr5 140315862 140315969 -12221290 - PB1D10 SINE Alu 0 117 1 7 1655 1230 241 22 0 chr5 140316033 140316307 -12220952 - B4 SINE B4 -10 282 3 7 1655 289 314 19 38 chr5 140316313 140316419 -12220840 - PB1D10 SINE Alu -5 112 9 7 1655 443 258 129 0 chr5 140316450 140316574 -12220685 - RSINE1 SINE B4 -14 151 12 7 1655 1202 67 0 20 chr5 140316596 140316749 -12220510 - B1_Mur4 SINE Alu 0 150 1 7 1655 436 132 24 0 chr5 140316755 140316838 -12220421 + CT-rich Low_complexity Low_complexity 3 87 0 7 1655 660 151 0 92 chr5 140316861 140316992 -12220267 + B1_Mus2 SINE Alu 15 133 -14 7 1655 594 0 0 0 chr5 140316992 140317058 -12220201 + (CAAAA)n Simple_repeat Simple_repeat 5 70 0 7 1655 522 0 0 0 chr5 140318384 140318442 -12218817 + (CATCC)n Simple_repeat Simple_repeat 4 61 0 7 1655 1302 84 0 11 chr5 140318586 140318949 -12218310 + (TCC)n Simple_repeat Simple_repeat 1 359 0 7 1655 763 205 96 40 chr5 140318949 140319068 -12218191 - ID_B1 SINE B4 -5 219 92 7 1655 2242 135 54 14 chr5 140319068 140319421 -12217838 + ORR1B2 LTR MaLR 1 367 0 7 1655 763 205 96 40 chr5 140319421 140319499 -12217760 - ID_B1 SINE B4 -133 91 11 7 1655 1802 47 0 23 chr5 140320883 140321144 -12216115 + 7SK RNA RNA 1 255 -76 7 1655 250 234 15 23 chr5 140322080 140322211 -12215048 + CT-rich Low_complexity Low_complexity 4 133 0 7 1655 1452 78 10 14 chr5 140323442 140323705 -12213554 + ZP3AR Satellite Satellite 1 261 -1 7 1655 457 219 17 68 chr5 140323801 140323977 -12213282 + (TCTCTG)n Simple_repeat Simple_repeat 6 172 0 7 1655 851 251 64 9 chr5 140324486 140324719 -12212540 + B4 SINE B4 1 246 -46 7 1655 901 98 15 0 chr5 140324761 140324893 -12212366 + B1_Mur2 SINE Alu 14 147 -2 7 1655 315 0 0 0 chr5 140324963 140324998 -12212261 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1655 183 139 0 0 chr5 140325000 140325036 -12212223 + (GA)n Simple_repeat Simple_repeat 1 36 0 7 1655 575 163 0 55 chr5 140325085 140325195 -12212064 - B1_Mur1 SINE Alu -1 148 45 7 1655 263 198 11 129 chr5 140325113 140325206 -12212053 - RLTR25A LTR ERVK -512 591 510 7 1655 276 360 114 0 chr5 140325212 140325423 -12211836 + L3 LINE CR1 4178 4412 -77 7 1655 423 0 0 0 chr5 140325489 140325536 -12211723 + (GA)n Simple_repeat Simple_repeat 2 48 0 7 1655 1468 115 18 44 chr5 140327039 140327401 -12209858 - ZP3AR Satellite Satellite -29 352 1 7 1655 503 257 29 29 chr5 140327697 140327837 -12209422 - B1F1 SINE Alu -9 140 1 7 1655 407 264 63 19 chr5 140328195 140328353 -12208906 + MLT1B LTR MaLR 16 180 -210 7 1655 419 319 7 27 chr5 140328342 140328490 -12208769 + ID_B1 SINE B4 78 222 -2 7 1655 1536 48 4 2 chr5 140328497 140328752 -12208507 + ZP3AR Satellite Satellite 1 255 0 7 1655 243 125 0 0 chr5 140328877 140328917 -12208342 + (ATG)n Simple_repeat Simple_repeat 1 40 0 7 1655 378 0 0 0 chr5 140328917 140328959 -12208300 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1655 225 146 0 0 chr5 140329769 140329817 -12207442 + (TTCA)n Simple_repeat Simple_repeat 4 51 0 7 1655 1000 285 63 8 chr5 140330392 140330647 -12206612 + B4 SINE B4 5 273 -19 7 1655 387 141 0 0 chr5 140330678 140330742 -12206517 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1655 1214 287 96 18 chr5 140330743 140331126 -12206133 + MTD LTR MaLR 1 397 -22 7 1655 911 264 39 121 chr5 140331361 140331774 -12205485 + MTEa LTR MaLR 1 379 0 7 1655 572 181 102 8 chr5 140331938 140332066 -12205193 + RMER15 LTR ERVL 422 561 -14 7 1655 998 266 54 13 chr5 140332083 140332395 -12204864 + L1MB7 LINE L1 5703 6058 -126 7 1655 805 274 53 25 chr5 140332396 140332677 -12204582 + B4A SINE B4 1 289 -3 7 1655 241 254 0 0 chr5 140332879 140332938 -12204321 + MIR SINE MIR 201 259 -3 7 1655 256 253 19 125 chr5 140332962 140333066 -12204193 + PB1 SINE Alu 33 125 -2 7 1655 366 293 28 0 chr5 140333228 140333555 -12203704 + (TG)n Simple_repeat Simple_repeat 1 336 0 8 1655 465 335 81 52 chr5 140333621 140333892 -12203367 - B4 SINE B4 -11 281 3 8 1655 233 266 6 25 chr5 140333986 140334148 -12203111 + CT-rich Low_complexity Low_complexity 3 161 0 8 1655 328 296 0 0 chr5 140334279 140334377 -12202882 + (CA)n Simple_repeat Simple_repeat 1 98 0 8 1655 221 256 0 23 chr5 140334389 140334477 -12202782 + (CATA)n Simple_repeat Simple_repeat 3 88 0 8 1655 408 312 0 84 chr5 140335525 140335679 -12201580 + RSINE1 SINE B4 11 151 -14 8 1655 336 213 0 26 chr5 140335721 140335798 -12201461 + B4 SINE B4 218 292 0 8 1655 1417 52 86 0 chr5 140335857 140336031 -12201228 + B2_Mm2 SINE B2 1 189 -6 8 1655 1289 132 108 0 chr5 140336147 140336351 -12200908 - URR1A DNA MER1_type 0 226 1 8 1655 330 315 22 0 chr5 140336497 140336586 -12200673 + polypurine Low_complexity Low_complexity 3 93 0 8 1655 444 238 167 32 chr5 140337279 140337405 -12199854 - B1F SINE Alu 0 149 7 8 1655 1635 37 5 0 chr5 140337587 140337778 -12199481 - B2_Mm1t SINE B2 0 193 2 8 1655 888 270 63 35 chr5 140338094 140338364 -12198895 + B4 SINE B4 1 280 -12 8 1655 405 0 0 0 chr5 140338364 140338409 -12198850 + (TC)n Simple_repeat Simple_repeat 1 45 0 8 1655 888 270 63 35 chr5 140338409 140338422 -12198837 + B4 SINE B4 281 292 0 8 1655 359 189 30 22 chr5 140338437 140338572 -12198687 + (CATATA)n Simple_repeat Simple_repeat 1 136 0 8 1655 296 48 24 0 chr5 140338712 140338754 -12198505 + (CATA)n Simple_repeat Simple_repeat 3 45 0 8 1655 475 378 15 5 chr5 140339007 140339209 -12198050 - MLT1A0 LTR MaLR -7 358 155 8 1655 222 205 13 58 chr5 140339256 140339411 -12197848 + (TATATG)n Simple_repeat Simple_repeat 6 153 0 8 1655 899 227 28 42 chr5 140339423 140339635 -12197624 - B4A SINE B4 -6 286 78 8 1655 349 290 114 19 chr5 140339627 140339785 -12197474 + Tigger7 DNA MER2_type 2313 2485 -6 8 1655 270 331 29 40 chr5 140340024 140340197 -12197062 - L1M5 LINE L1 -825 5321 5151 8 1655 650 231 6 24 chr5 140340430 140340594 -12196665 - RSINE1 SINE B4 -2 163 3 8 1655 877 282 47 4 chr5 140340594 140340814 -12196445 - B4A SINE B4 -62 230 1 8 1655 721 269 64 157 chr5 140341033 140341421 -12195838 - ORR1E LTR MaLR -2 357 6 8 1655 340 261 59 25 chr5 140341378 140341614 -12195645 - RMER17D LTR ERVK -358 531 288 8 1655 469 292 112 72 chr5 140341690 140341941 -12195318 + ORR1D2 LTR MaLR 6 266 -104 8 1655 387 248 0 68 chr5 140341954 140342071 -12195188 + ORR1D2 LTR MaLR 240 348 -31 8 1655 892 169 6 6 chr5 140342112 140342291 -12194968 + CT-rich Low_complexity Low_complexity 2 180 0 8 1655 351 0 0 0 chr5 140342296 140342335 -12194924 + (TTTC)n Simple_repeat Simple_repeat 1 39 0 8 1655 974 148 0 0 chr5 140342336 140342478 -12194781 - B1_Mus1 SINE Alu -6 142 1 8 1655 783 249 0 58 chr5 140342486 140342691 -12194568 - B3A SINE B2 -1 197 5 8 1655 988 22 0 100 chr5 140343028 140343228 -12194031 + (TG)n Simple_repeat Simple_repeat 1 180 0 8 1655 212 269 0 0 chr5 140343252 140343304 -12193955 - B1_Mur3 SINE Alu -31 118 67 8 1655 480 310 134 55 chr5 140343336 140343589 -12193670 - B4A SINE B4 -19 273 1 8 1655 1015 96 15 0 chr5 140343635 140343771 -12193488 - B1_Mur3 SINE Alu -9 140 3 8 1655 981 145 103 49 chr5 140343781 140343940 -12193319 - B3 SINE B2 -1 215 43 8 1655 3672 15 0 0 chr5 140343940 140344336 -12192923 - MTA_Mm LTR MaLR 0 396 1 8 1655 9382 36 2 1 chr5 140344336 140345433 -12191826 - MTA_Mm-int LTR MaLR 0 1098 1 8 1655 3672 15 0 0 chr5 140345433 140345829 -12191430 - MTA_Mm LTR MaLR 0 396 1 8 1655 981 145 103 49 chr5 140345829 140345870 -12191389 - B3 SINE B2 -174 42 4 8 1655 665 241 34 6 chr5 140345870 140346041 -12191218 - MLT1B LTR MaLR -212 178 3 8 1655 349 158 362 69 chr5 140346481 140346597 -12190662 + B1_Mur4 SINE Alu 1 150 0 8 1655 250 284 0 26 chr5 140347209 140347285 -12189974 + CT-rich Low_complexity Low_complexity 1 74 0 8 1655 185 119 24 0 chr5 140347297 140347339 -12189920 + (TC)n Simple_repeat Simple_repeat 2 44 0 8 1655 657 284 0 0 chr5 140347340 140347481 -12189778 - B1F SINE Alu -7 142 2 8 1655 204 206 0 0 chr5 140347483 140347517 -12189742 + polypyrimidine Low_complexity Low_complexity 4 37 0 8 1655 302 45 23 0 chr5 140347763 140347807 -12189452 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 8 1655 248 70 23 0 chr5 140347990 140348033 -12189226 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 8 1655 243 353 0 38 chr5 140348039 140348145 -12189114 - L1M4 LINE L1 -519 5659 5558 8 1655 282 271 28 18 chr5 140348252 140348361 -12188898 + (TCTA)n Simple_repeat Simple_repeat 4 113 0 8 1655 208 209 43 29 chr5 140348361 140348499 -12188760 + (TCCA)n Simple_repeat Simple_repeat 3 142 0 8 1655 666 189 6 11 chr5 140348579 140348756 -12188503 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 8 1655 254 208 26 0 chr5 140348773 140348850 -12188409 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 8 1655 318 156 0 0 chr5 140349516 140349580 -12187679 + (TG)n Simple_repeat Simple_repeat 1 64 0 8 1655 644 311 66 106 chr5 140349595 140349897 -12187362 - B4A SINE B4 0 292 3 8 1655 812 132 0 8 chr5 140349915 140350045 -12187214 - B1_Mur3 SINE Alu -1 148 20 8 1655 213 39 0 0 chr5 140350244 140350270 -12186989 + (GA)n Simple_repeat Simple_repeat 2 27 0 8 1655 875 176 0 26 chr5 140350486 140350638 -12186621 + B1_Mur1 SINE Alu 2 149 0 8 1655 294 184 44 44 chr5 140350638 140350752 -12186507 + A-rich Low_complexity Low_complexity 6 119 0 8 1655 1047 266 123 14 chr5 140350776 140351138 -12186121 + MTD LTR MaLR 3 405 -14 8 1655 2038 248 152 86 chr5 140351138 140351992 -12185267 + MTD-int LTR MaLR 1 911 -347 8 1655 3638 53 4 71 chr5 140352075 140352535 -12184724 + L1_Mus2 LINE L1 6094 6520 -46 8 1655 1100 103 0 20 chr5 140352535 140352684 -12184575 - B1_Mus2 SINE Alu 0 147 2 8 1655 3638 53 4 71 chr5 140352684 140352730 -12184529 + L1_Mus2 LINE L1 6521 6566 0 8 1655 284 240 0 96 chr5 140352774 140352857 -12184402 + PB1D10 SINE Alu 9 83 -34 8 1655 657 69 0 0 chr5 140352876 140352963 -12184296 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 8 1655 1322 122 10 0 chr5 140353052 140353379 -12183880 + ZP3AR Satellite Satellite 1 330 -1 8 1655 1058 200 158 12 chr5 140353890 140354143 -12183116 + B4 SINE B4 1 290 -2 8 1655 297 229 60 12 chr5 140354277 140354361 -12182898 - MTEb LTR MaLR -3 376 289 8 1655 574 209 0 0 chr5 140354487 140354592 -12182667 + RSINE1 SINE B4 4 108 -57 8 1655 852 265 64 53 chr5 140354676 140354959 -12182300 + B4 SINE B4 1 286 -6 8 1655 257 411 75 19 chr5 140355160 140355321 -12181938 - MLT1G3 LTR MaLR -67 512 343 8 1655 589 302 40 0 chr5 140355484 140355633 -12181626 - RSINE1 SINE B4 -10 155 1 8 1655 931 268 127 65 chr5 140356038 140356393 -12180866 + MTE2a LTR MaLR 3 379 0 8 1655 293 352 16 0 chr5 140356524 140356652 -12180607 - MLT1G3 LTR MaLR -465 130 1 8 1655 293 62 0 20 chr5 140356990 140357039 -12180220 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 8 1655 1170 82 0 0 chr5 140357039 140357186 -12180073 - B1_Mm SINE Alu 0 147 1 8 1655 207 0 0 0 chr5 140357222 140357245 -12180014 + (TG)n Simple_repeat Simple_repeat 2 24 0 8 1655 652 290 12 6 chr5 140357257 140357427 -12179832 - B3A SINE B2 -21 177 7 8 1655 2599 140 31 24 chr5 140357533 140357951 -12179308 + MTC LTR MaLR 1 421 0 8 1655 395 0 40 0 chr5 140358404 140358454 -12178805 + (TCTG)n Simple_repeat Simple_repeat 2 53 0 8 1655 435 233 178 41 chr5 140358602 140358799 -12178460 - RMER15 LTR ERVL -15 560 337 8 1655 493 302 54 139 chr5 140359261 140359521 -12177738 - MLT1F1 LTR MaLR -2 567 250 8 1655 851 283 14 5 chr5 140359855 140360068 -12177191 - B3 SINE B2 -1 215 1 8 1655 1356 232 56 13 chr5 140360084 140360390 -12176869 - MTE2b LTR MaLR -39 340 22 8 1655 265 215 15 60 chr5 140360391 140360466 -12176793 - MTEb LTR MaLR -207 172 101 8 1655 1037 243 75 112 chr5 140360802 140361187 -12176072 + MTE2b LTR MaLR 9 379 0 8 1655 354 285 18 24 chr5 140361507 140361676 -12175583 + L1M4 LINE L1 5195 5362 -784 8 1655 1029 255 3 49 chr5 140361681 140361966 -12175293 + B4A SINE B4 21 292 0 8 1655 246 294 0 0 chr5 140361912 140361980 -12175279 + B3A SINE B2 115 182 -16 8 1655 285 252 29 58 chr5 140362056 140362160 -12175099 + PB1D10 SINE Alu 7 104 -13 8 1655 342 0 0 0 chr5 140362160 140362198 -12175061 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 8 1655 465 323 65 35 chr5 140362199 140362507 -12174752 + L1M4 LINE L1 5392 5711 -529 8 1655 324 0 0 0 chr5 140363275 140363311 -12173948 + (TAA)n Simple_repeat Simple_repeat 3 38 0 8 1655 300 277 173 19 chr5 140363378 140363540 -12173719 + L1M4b LINE L1 2731 2917 -4417 8 1655 392 253 0 11 chr5 140363547 140363639 -12173620 - PB1D10 SINE Alu -2 115 25 8 1655 243 179 37 37 chr5 140364894 140364975 -12172284 + (CTGGGG)n Simple_repeat Simple_repeat 2 82 0 8 1655 216 243 143 0 chr5 140365937 140366007 -12171252 - ID4 SINE ID -3 80 1 8 1655 1517 93 3 0 chr5 140365996 140366276 -12170983 - ZP3AR Satellite Satellite 0 280 1 8 1655 303 304 55 23 chr5 140366274 140366402 -12170857 - B1F SINE Alu -8 141 10 8 1655 262 304 0 11 chr5 140367444 140367537 -12169722 + (TG)n Simple_repeat Simple_repeat 1 92 0 8 1655 284 256 0 49 chr5 140367539 140367558 -12169701 - B4A SINE B4 0 292 275 8 1655 915 137 0 0 chr5 140367558 140367733 -12169526 + (TG)n Simple_repeat Simple_repeat 1 175 0 8 1655 284 256 0 49 chr5 140367733 140367795 -12169464 - B4A SINE B4 -18 274 215 8 1655 771 157 36 29 chr5 140367890 140368028 -12169231 - B1_Mur3 SINE Alu 0 149 11 8 1655 210 262 0 62 chr5 140368254 140368319 -12168940 + MIRc SINE MIR 84 144 -124 8 1655 183 255 118 0 chr5 140369791 140369842 -12167417 - MIR SINE MIR -100 108 52 8 1655 609 27 0 0 chr5 140370473 140370548 -12166711 + (TG)n Simple_repeat Simple_repeat 2 76 0 8 1655 338 221 23 0 chr5 140370558 140370644 -12166615 - B4A SINE B4 -1 291 204 8 1655 500 278 45 38 chr5 140370613 140370813 -12166446 - B3A SINE B2 0 216 12 8 1655 687 153 15 15 chr5 140370848 140370981 -12166278 - B1_Mur3 SINE Alu 0 149 17 9 1655 1624 32 0 16 chr5 140370999 140371190 -12166069 - B2_Mm1a SINE B2 -5 188 1 9 1655 526 289 149 20 chr5 140371190 140371391 -12165868 - B4A SINE B4 -64 228 2 8 1655 340 285 127 44 chr5 140372055 140372153 -12165106 - MLT1B LTR MaLR -54 336 239 9 1655 189 0 0 0 chr5 140372153 140372174 -12165085 + (TG)n Simple_repeat Simple_repeat 2 22 0 9 1655 340 285 127 44 chr5 140372174 140372233 -12165026 - MLT1B LTR MaLR -152 238 167 9 1655 497 216 54 9 chr5 140372280 140372392 -12164867 - B4 SINE B4 -173 119 3 9 1655 364 298 136 19 chr5 140372394 140372548 -12164711 - MLT1B LTR MaLR -212 178 7 9 1655 255 217 56 28 chr5 140372821 140372892 -12164367 + MIR SINE MIR 71 143 -119 9 1655 341 222 25 92 chr5 140373270 140373362 -12163897 + PB1D7 SINE Alu 5 92 -28 9 1655 3267 55 2 17 chr5 140373362 140373768 -12163491 - MTB LTR MaLR 0 400 1 9 1655 341 222 25 92 chr5 140373768 140373794 -12163465 + PB1D7 SINE Alu 93 115 -5 9 1655 1570 33 0 7 chr5 140373805 140374517 -12162742 + ZP3AR Satellite Satellite 1 707 0 9 1655 944 101 58 0 chr5 140374654 140374792 -12162467 + B1_Mus1 SINE Alu 2 147 -1 9 1655 231 356 51 0 chr5 140374884 140375002 -12162257 + MIRb SINE MIR 75 198 -70 9 1655 418 247 28 66 chr5 140375027 140375209 -12162050 + MLT1B LTR MaLR 92 266 -124 9 1655 251 54 0 26 chr5 140375217 140375255 -12162004 + (TCC)n Simple_repeat Simple_repeat 1 37 0 9 1655 207 162 0 0 chr5 140375651 140375688 -12161571 + (CATG)n Simple_repeat Simple_repeat 3 39 0 9 1655 201 304 0 0 chr5 140375904 140375960 -12161299 + (CA)n Simple_repeat Simple_repeat 1 56 0 9 1655 231 125 75 0 chr5 140377025 140377065 -12160194 + B1F SINE Alu 107 149 0 9 1655 502 292 0 8 chr5 140377091 140377222 -12160037 + B4 SINE B4 4 133 -159 9 1655 575 244 63 0 chr5 140377268 140377395 -12159864 + B1_Mur2 SINE Alu 2 136 -13 9 1655 203 0 0 36 chr5 140377397 140377425 -12159834 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 9 1655 387 0 0 0 chr5 140377471 140377514 -12159745 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1655 828 270 14 19 chr5 140377531 140377746 -12159513 + B3 SINE B2 1 214 -2 9 1655 1049 256 41 0 chr5 140377806 140378072 -12159187 + B4 SINE B4 16 292 0 9 206 483 266 4 0 chr5 140378072 140378318 -12158941 + (CA)n Simple_repeat Simple_repeat 1 247 0 9 1656 448 257 0 17 chr5 140378290 140378464 -12158795 + (CATA)n Simple_repeat Simple_repeat 4 174 0 9 1656 920 259 63 4 chr5 140378473 140378893 -12158366 + L1MB5 LINE L1 5038 5484 -700 9 1656 405 338 89 13 chr5 140379029 140379254 -12158005 + L1MB5 LINE L1 5733 5974 -200 9 1656 502 292 14 7 chr5 140379327 140379343 -12157916 - RSINE1 SINE B4 -25 140 126 9 1656 396 0 0 0 chr5 140379343 140379387 -12157872 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1656 502 292 14 7 chr5 140379387 140379508 -12157751 - RSINE1 SINE B4 -40 125 3 9 1656 351 0 0 0 chr5 140379727 140379766 -12157493 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1656 400 281 74 8 chr5 140379842 140379915 -12157344 + RSINE1 SINE B4 19 98 -67 9 1656 252 0 0 0 chr5 140379915 140379943 -12157316 + (CAA)n Simple_repeat Simple_repeat 2 29 0 9 1656 400 281 74 8 chr5 140379943 140379991 -12157268 + RSINE1 SINE B4 99 147 -18 9 1656 786 190 42 0 chr5 140380111 140380253 -12157006 - B1_Mur1 SINE Alu -1 148 1 9 1656 286 279 122 15 chr5 140380447 140380578 -12156681 + B1F1 SINE Alu 3 147 -2 9 1656 1358 32 16 0 chr5 140380595 140380784 -12156475 + ZP3AR Satellite Satellite 16 207 -5 9 1656 1569 143 0 0 chr5 140380808 140381031 -12156228 + URR1B DNA MER1_type 3 225 0 9 1656 354 362 25 38 chr5 140381182 140381340 -12155919 - L1MC LINE L1 -2122 5760 5605 9 1656 307 227 156 22 chr5 140381501 140381591 -12155668 - L1MC LINE L1 -763 5361 5260 9 1656 315 0 0 0 chr5 140382038 140382073 -12155186 + (TAA)n Simple_repeat Simple_repeat 2 36 0 9 1656 353 287 53 0 chr5 140382084 140382178 -12155081 + PB1D7 SINE Alu 1 99 -21 9 1656 214 276 26 26 chr5 140382182 140382260 -12154999 + GA-rich Low_complexity Low_complexity 3 80 0 9 1656 239 243 9 28 chr5 140384334 140384440 -12152819 + (CCG)n Simple_repeat Simple_repeat 2 105 0 9 1656 219 69 0 0 chr5 140384658 140384687 -12152572 + (CCG)n Simple_repeat Simple_repeat 3 31 0 9 1656 203 133 22 0 chr5 140388393 140388438 -12148821 + (CGGG)n Simple_repeat Simple_repeat 2 47 0 9 1656 24 53 0 0 chr5 140388461 140388499 -12148760 + GC_rich Low_complexity Low_complexity 1 38 0 9 1656 300 111 0 0 chr5 140388560 140388605 -12148654 + (CGG)n Simple_repeat Simple_repeat 1 45 0 9 1656 315 216 53 26 chr5 140389452 140389528 -12147731 + MIRc SINE MIR 84 161 -107 9 1656 186 133 0 0 chr5 140390607 140390637 -12146622 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1656 189 0 0 0 chr5 140390643 140390664 -12146595 + (TC)n Simple_repeat Simple_repeat 1 21 0 9 1656 266 182 0 0 chr5 140392437 140392481 -12144778 - MIR SINE MIR -56 152 109 9 1656 432 0 0 0 chr5 140392990 140393038 -12144221 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1656 1741 21 0 0 chr5 140393460 140393652 -12143607 - B2_Mm1a SINE B2 0 193 2 9 1656 238 288 0 15 chr5 140394458 140394525 -12142734 + PB1D10 SINE Alu 42 107 -10 9 1656 624 200 61 8 chr5 140394698 140394829 -12142430 + RSINE1 SINE B4 3 140 -25 9 1656 189 0 0 0 chr5 140395456 140395477 -12141782 + (T)n Simple_repeat Simple_repeat 1 21 0 9 1656 1060 137 6 17 chr5 140395563 140395741 -12141518 - URR1B DNA MER1_type -49 176 1 9 1656 815 279 50 12 chr5 140395762 140396002 -12141257 + B4 SINE B4 40 288 -4 9 1656 563 0 15 0 chr5 140396317 140396384 -12140875 + (CA)n Simple_repeat Simple_repeat 1 68 0 9 1656 276 258 43 33 chr5 140396696 140396788 -12140471 - L1M5 LINE L1 -303 5876 5784 9 1656 235 320 53 81 chr5 140396828 140396905 -12140354 - MT2B2 LTR ERVL -258 343 167 9 1656 507 254 0 0 chr5 140396905 140397015 -12140244 - PB1D7 SINE Alu -8 112 3 9 1656 257 320 37 46 chr5 140396919 140397027 -12140232 - B4 SINE B4 -105 187 81 9 1656 598 274 90 12 chr5 140397081 140397247 -12140012 - B4 SINE B4 -2 290 112 9 1656 285 172 0 0 chr5 140397269 140397333 -12139926 + (CA)n Simple_repeat Simple_repeat 1 64 0 9 1656 302 286 10 30 chr5 140397513 140397614 -12139645 - B4 SINE B4 -192 100 2 9 1656 1288 294 37 55 chr5 140397614 140398287 -12138972 - L1ME1 LINE L1 -305 6734 6085 9 1656 300 186 0 0 chr5 140398301 140398360 -12138899 + C-rich Low_complexity Low_complexity 3 61 0 9 1656 674 217 30 100 chr5 140398360 140398590 -12138669 - ID_B1 SINE B4 -10 214 1 9 1656 313 316 94 12 chr5 140398650 140398820 -12138439 - L1ME1 LINE L1 -1001 6005 5822 9 1656 252 0 0 0 chr5 140398835 140398863 -12138396 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1656 697 218 56 31 chr5 140398978 140399139 -12138120 - RSINE1 SINE B4 0 165 1 9 1656 239 290 145 68 chr5 140399231 140399479 -12137780 - L1ME1 LINE L1 -1440 5566 5300 9 1656 242 293 13 0 chr5 140399489 140399564 -12137695 - PB1D10 SINE Alu -7 110 35 9 1656 393 292 0 48 chr5 140399748 140399874 -12137385 - B4 SINE B4 -3 289 170 9 1656 289 290 44 61 chr5 140399818 140399932 -12137327 - PB1D9 SINE Alu -6 114 3 9 1656 412 236 104 28 chr5 140399952 140400096 -12137163 - B3 SINE B2 -2 214 60 9 1656 321 303 213 44 chr5 140400136 140400750 -12136509 - L1ME1 LINE L1 -1824 5182 4473 9 1656 427 302 8 8 chr5 140400750 140400867 -12136392 - PB1D10 SINE Alu 0 117 1 9 1656 225 276 126 108 chr5 140400867 140401106 -12136153 - L1ME1 LINE L1 -2534 4472 4196 9 1656 357 280 72 27 chr5 140401235 140401561 -12135698 - L1ME1 LINE L1 -3740 3594 3419 9 1656 210 71 0 0 chr5 140401615 140401643 -12135616 + (TCC)n Simple_repeat Simple_repeat 1 28 0 9 1656 614 185 0 0 chr5 140401643 140401751 -12135508 - B1_Mur4 SINE Alu -8 142 35 9 1656 576 299 35 0 chr5 140401801 140401975 -12135284 + B3A SINE B2 3 182 -16 9 1656 1254 54 0 0 chr5 140402015 140402163 -12135096 - B1_Mus1 SINE Alu 0 148 1 9 1656 685 265 0 13 chr5 140402167 140402316 -12134943 - B1_Mur3 SINE Alu -2 147 1 9 1656 299 316 71 52 chr5 140402336 140402703 -12134556 - L1ME1 LINE L1 -5289 1615 1242 9 1656 196 225 28 14 chr5 140402776 140402848 -12134411 + C-rich Low_complexity Low_complexity 4 76 0 9 1656 204 175 31 16 chr5 140402893 140402957 -12134302 + CT-rich Low_complexity Low_complexity 2 66 0 9 1656 931 288 66 62 chr5 140403690 140403979 -12133280 - B4A SINE B4 0 292 3 9 1656 234 300 0 0 chr5 140403982 140404042 -12133217 - PB1D10 SINE Alu -56 61 2 9 1656 566 240 8 0 chr5 140404082 140404203 -12133056 + RSINE1 SINE B4 27 148 -17 9 1656 618 270 51 0 chr5 140404254 140404391 -12132868 + RSINE1 SINE B4 4 147 -18 9 1656 414 0 0 0 chr5 140404395 140404441 -12132818 + (CA)n Simple_repeat Simple_repeat 1 46 0 9 1656 816 181 0 0 chr5 140404828 140404994 -12132265 + (TGAA)n Simple_repeat Simple_repeat 1 166 0 9 1656 566 249 7 7 chr5 140405018 140405322 -12131937 + (TGGA)n Simple_repeat Simple_repeat 1 304 0 9 1656 197 333 81 54 chr5 140405477 140405626 -12131633 - L4 LINE RTE -69 1960 1808 9 1656 212 231 0 19 chr5 140406431 140406484 -12130775 + MIR SINE MIR 87 138 -70 9 1656 469 291 178 6 chr5 140406512 140406692 -12130567 - ID_B1 SINE B4 -13 211 1 9 1656 249 33 0 0 chr5 140407135 140407165 -12130094 + (CCTG)n Simple_repeat Simple_repeat 3 32 0 9 1656 264 282 28 0 chr5 140407282 140407353 -12129906 + MIR SINE MIR 81 153 -55 9 1656 248 242 16 0 chr5 140407528 140407539 -12129720 + ID SINE ID 70 81 -143 9 1656 239 254 13 66 chr5 140407539 140407615 -12129644 + B1F2 SINE Alu 1 72 -77 9 1656 539 217 61 68 chr5 140409178 140409326 -12127933 - RSINE1 SINE B4 -14 151 5 9 1656 790 203 107 20 chr5 140409338 140409534 -12127725 - ID_B1 SINE B4 -9 215 3 9 1656 439 302 78 44 chr5 140410130 140410310 -12126949 - ID_B1 SINE B4 -2 222 37 9 1656 191 129 0 0 chr5 140410414 140410445 -12126814 - L2c LINE L2 -21 3366 3336 9 1656 487 234 0 27 chr5 140410767 140410877 -12126382 + PB1D10 SINE Alu 11 117 0 9 1656 359 258 54 0 chr5 140411600 140411693 -12125566 + PB1D7 SINE Alu 23 120 0 9 1656 354 165 49 108 chr5 140411750 140411852 -12125407 + MT2B LTR ERVL 162 257 -344 9 1656 782 157 7 15 chr5 140411763 140411899 -12125360 + B1_Mur2 SINE Alu 15 149 0 9 1656 400 248 67 0 chr5 140411965 140412070 -12125189 - B4 SINE B4 -6 286 175 1 1656 405 280 33 115 chr5 140412874 140413056 -12124203 - ID_B1 SINE B4 -57 167 1 1 1656 1496 37 11 1 chr5 140413014 140413725 -12123534 - ZP3AR Satellite Satellite -21 718 1 1 1656 328 319 82 0 chr5 140413736 140413871 -12123388 - B1F SINE Alu -2 147 2 1 1656 221 154 0 0 chr5 140414169 140414208 -12123051 + GA-rich Low_complexity Low_complexity 1 39 0 1 1656 478 152 23 34 chr5 140414215 140414392 -12122867 + (CAGAGA)n Simple_repeat Simple_repeat 2 176 0 1 1656 448 340 23 28 chr5 140414586 140414801 -12122458 - RLTR42-int LTR ERVK -4134 1388 1175 1 1656 284 285 15 34 chr5 140415152 140415260 -12121999 - L1M5 LINE L1 -1497 4649 4542 1 1656 493 208 12 0 chr5 140415286 140415459 -12121800 + (TG)n Simple_repeat Simple_repeat 2 176 0 1 1656 589 198 11 4 chr5 140415504 140415778 -12121481 + (TG)n Simple_repeat Simple_repeat 1 276 0 1 1656 788 256 34 0 chr5 140415778 140415954 -12121305 - B3A SINE B2 -16 182 1 1 1656 258 333 82 17 chr5 140415979 140416211 -12121048 - L1M5 LINE L1 -1789 4357 4111 1 1656 655 247 7 13 chr5 140416612 140416764 -12120495 + B3A SINE B2 1 151 -47 1 1656 477 0 0 0 chr5 140416766 140416819 -12120440 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1656 348 357 55 71 chr5 140417025 140417263 -12119996 - L1M5 LINE L1 -947 5199 4966 1 1656 525 32 0 0 chr5 140417393 140417456 -12119803 + (TG)n Simple_repeat Simple_repeat 1 63 0 1 1656 546 233 35 0 chr5 140417614 140417730 -12119529 + PB1D7 SINE Alu 1 120 0 1 1656 984 224 48 123 chr5 140417743 140417992 -12119267 + B4 SINE B4 1 228 -64 1 1656 1002 46 122 0 chr5 140417992 140418123 -12119136 - B1_Mus2 SINE Alu 0 147 1 1 1656 2496 61 3 84 chr5 140418126 140418177 -12119082 - ORR1A2 LTR MaLR 0 327 286 1 1656 1199 101 51 0 chr5 140418177 140418355 -12118904 - B2_Mm1a SINE B2 -6 187 1 1 1656 2496 61 3 84 chr5 140418355 140418659 -12118600 - ORR1A2 LTR MaLR -42 285 1 1 1656 984 224 48 123 chr5 140418659 140418721 -12118538 + B4 SINE B4 229 292 0 1 1656 221 261 29 14 chr5 140418898 140418968 -12118291 + MIRc SINE MIR 85 155 -113 1 1656 180 176 0 0 chr5 140419490 140419524 -12117735 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1656 183 42 0 0 chr5 140419656 140419680 -12117579 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1656 471 35 0 0 chr5 140422450 140422507 -12114752 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1656 398 196 9 0 chr5 140422871 140422983 -12114276 + (TGAA)n Simple_repeat Simple_repeat 4 116 0 1 1656 206 228 105 0 chr5 140424609 140424666 -12112593 + L2a LINE L2 3363 3425 -1 1 1656 402 215 13 0 chr5 140424831 140424910 -12112349 - ID4_ SINE ID -3 80 1 1 1656 943 75 27 0 chr5 140424910 140425057 -12112202 - ZP3AR Satellite Satellite -11 201 51 1 1656 1121 286 22 19 chr5 140425910 140426155 -12111104 - MER113 DNA MER1_type -89 432 189 1 1656 381 22 0 0 chr5 140426155 140426201 -12111058 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1656 1121 286 22 19 chr5 140426201 140426326 -12110933 - MER113 DNA MER1_type -333 188 61 1 1656 228 346 37 12 chr5 140426469 140426551 -12110708 - MLT1J LTR MaLR -203 309 226 1 1656 1617 31 0 54 chr5 140426753 140426956 -12110303 + B2_Mm1a SINE B2 1 192 -1 1 1656 202 29 57 0 chr5 140427723 140427758 -12109501 + (TA)n Simple_repeat Simple_repeat 1 37 0 1 1656 396 0 0 0 chr5 140427897 140427941 -12109318 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1656 414 0 0 0 chr5 140427941 140427986 -12109273 + (GA)n Simple_repeat Simple_repeat 1 46 0 1 1656 565 209 27 0 chr5 140428010 140428120 -12109139 - RSINE1 SINE B4 -51 114 2 1 1656 242 322 11 22 chr5 140428637 140428726 -12108533 + RSINE1 SINE B4 78 165 0 1 1656 1336 118 98 5 chr5 140429160 140429365 -12107894 - URR1B DNA MER1_type 0 225 2 1 1656 191 218 0 179 chr5 140429517 140429612 -12107647 + L2 LINE L2 2814 2891 -528 1 1656 225 0 0 0 chr5 140429641 140429666 -12107593 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1656 23 0 0 0 chr5 140429822 140429845 -12107414 + AT_rich Low_complexity Low_complexity 1 23 0 1 1656 349 214 44 67 chr5 140430083 140430173 -12107086 - B1F SINE Alu -40 109 22 1 1656 387 269 0 0 chr5 140430199 140430340 -12106919 + (TG)n Simple_repeat Simple_repeat 2 142 0 1 1656 322 303 0 22 chr5 140430342 140430433 -12106826 + (TATG)n Simple_repeat Simple_repeat 3 91 0 1 1656 296 352 127 5 chr5 140430443 140430640 -12106619 + RMER12 LTR ERVK 737 957 -365 1 1656 562 251 171 61 chr5 140430640 140430903 -12106356 - B4A SINE B4 0 292 1 1 1656 213 286 120 11 chr5 140431547 140431639 -12105620 + MIRb SINE MIR 56 157 -111 1 1656 869 172 340 48 chr5 140431812 140432066 -12105193 - MTC LTR MaLR -2 419 96 1 1656 261 0 0 0 chr5 140432066 140432095 -12105164 + (CCCCCA)n Simple_repeat Simple_repeat 2 30 0 1 1656 1129 60 0 0 chr5 140432096 140432230 -12105029 - B1_Mus2 SINE Alu -13 134 1 1 1656 869 143 26 98 chr5 140432230 140432316 -12104943 - MTC LTR MaLR -326 95 9 1 1656 198 0 0 0 chr5 140432742 140432764 -12104495 + (CAG)n Simple_repeat Simple_repeat 2 23 0 1 1656 342 0 0 0 chr5 140432817 140432855 -12104404 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1656 231 36 0 0 chr5 140433879 140433907 -12103352 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1656 602 261 0 0 chr5 140434307 140434350 -12102909 + B4A SINE B4 43 85 -207 1 1656 306 271 20 50 chr5 140434350 140434451 -12102808 + B1F SINE Alu 1 98 -51 1 1656 314 201 32 60 chr5 140436537 140436637 -12100622 + PB1D10 SINE Alu 17 111 -6 1 1656 684 264 84 45 chr5 140436680 140436882 -12100377 + ID_B1 SINE B4 1 210 -14 1 1656 387 0 0 0 chr5 140436884 140436927 -12100332 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1656 333 68 0 0 chr5 140437141 140437185 -12100074 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1656 1221 236 11 14 chr5 140437197 140437472 -12099787 - B4 SINE B4 -17 275 2 1 1656 339 130 0 0 chr5 140437536 140437590 -12099669 + (GGGA)n Simple_repeat Simple_repeat 2 55 0 1 1656 238 174 59 0 chr5 140437850 140437914 -12099345 - PB1D10 SINE Alu -39 81 7 1 1656 203 0 37 0 chr5 140438360 140438387 -12098872 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1656 783 269 69 4 chr5 140438395 140438641 -12098618 - B4A SINE B4 -27 265 4 1 1656 27 0 0 0 chr5 140438735 140438762 -12098497 + AT_rich Low_complexity Low_complexity 1 27 0 1 1656 217 118 19 19 chr5 140438889 140438941 -12098318 + A-rich Low_complexity Low_complexity 2 53 0 1 1656 326 164 0 27 chr5 140439256 140439331 -12097928 + CT-rich Low_complexity Low_complexity 2 74 0 1 1656 230 190 0 94 chr5 140440659 140440723 -12096536 + polypyrimidine Low_complexity Low_complexity 4 61 0 1 1656 309 292 9 36 chr5 140441294 140441404 -12095855 - MIR SINE MIR -79 183 77 1 1656 800 157 0 14 chr5 140441995 140442221 -12095038 + (TG)n Simple_repeat Simple_repeat 1 222 0 1 1656 1377 61 0 0 chr5 140442984 140443164 -12094095 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1 1656 756 277 129 12 chr5 140443210 140443466 -12093793 - B4A SINE B4 0 292 7 1 1656 608 238 0 0 chr5 140446107 140446229 -12091030 - RSINE1 SINE B4 -42 123 2 1 1656 690 207 0 0 chr5 140449959 140450138 -12087121 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1656 209 283 0 0 chr5 140450222 140450268 -12086991 + polypyrimidine Low_complexity Low_complexity 2 47 0 1 1656 24 67 0 0 chr5 140450268 140450313 -12086946 + AT_rich Low_complexity Low_complexity 1 45 0 1 1656 1286 192 9 0 chr5 140452526 140452740 -12084519 - B3 SINE B2 0 216 1 1 1656 203 238 0 0 chr5 140452748 140452790 -12084469 - MIRb SINE MIR -14 254 213 1 1656 377 312 86 11 chr5 140453791 140453966 -12083293 - RLTR42-int LTR ERVK -4179 1343 1156 1 1656 242 336 54 18 chr5 140454105 140454217 -12083042 - L2c LINE L2 0 3387 3272 1 1656 1026 245 48 4 chr5 140455153 140455403 -12081856 - B4A SINE B4 -30 262 2 1 1656 360 0 0 0 chr5 140455587 140455627 -12081632 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1656 576 307 67 23 chr5 140455752 140456121 -12081138 - L1MD2 LINE L1 -325 6019 5623 1 1656 457 184 23 0 chr5 140456180 140456267 -12080992 - ID_B1 SINE B4 -3 221 133 1 1656 715 193 18 24 chr5 140456308 140456473 -12080786 - RLTR11A2 LTR ERVK -30 497 334 1 1656 180 0 0 0 chr5 140456491 140456511 -12080748 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1656 342 117 12 33 chr5 140456520 140456593 -12080666 - B2_Mm2 SINE B2 -95 121 47 1 1656 1128 72 7 0 chr5 140456638 140456791 -12080468 - B2_Mm1t SINE B2 -39 154 1 1 1656 1141 230 89 25 chr5 140456791 140457116 -12080143 - RLTR11A2 LTR ERVK -181 346 1 1 1656 516 203 113 8 chr5 140457116 140457240 -12080019 - ID_B1 SINE B4 -86 138 2 1 1656 334 233 66 28 chr5 140457240 140457342 -12079917 - MTC LTR MaLR -281 140 35 1 1656 1022 147 17 11 chr5 140457356 140457535 -12079724 + URR1A DNA MER1_type 47 226 0 1 1656 309 337 176 38 chr5 140458595 140458840 -12078419 - L1MDa LINE L1 -4846 1787 1498 1 1656 243 0 0 0 chr5 140458840 140458867 -12078392 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1656 309 337 176 38 chr5 140458867 140459019 -12078240 - L1MDa LINE L1 -5136 1497 1336 1 1656 558 187 9 0 chr5 140459049 140459156 -12078103 - RSINE1 SINE B4 -55 110 3 1 1656 492 18 0 0 chr5 140459190 140459247 -12078012 + (CA)n Simple_repeat Simple_repeat 2 58 0 1 1656 562 325 99 27 chr5 140459330 140459592 -12077667 + B4A SINE B4 12 292 0 1 1656 256 326 14 70 chr5 140459635 140459777 -12077482 - L1MDa LINE L1 -5303 1237 1104 1 1656 254 73 24 0 chr5 140459797 140459838 -12077421 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1656 1527 219 83 114 chr5 140459880 140460425 -12076834 - RLTR11A LTR ERVK 0 528 1 1 1656 291 306 18 18 chr5 140460628 140460738 -12076521 + (TG)n Simple_repeat Simple_repeat 1 110 0 1 1656 716 206 140 21 chr5 140461148 140461341 -12075918 - B3 SINE B2 0 216 1 1 1656 570 286 33 87 chr5 140461343 140461584 -12075675 - B4A SINE B4 -64 228 1 1 1656 251 342 87 7 chr5 140461827 140461977 -12075282 - HAL1 LINE L1 -1898 609 448 1 1656 266 271 26 0 chr5 140462024 140462175 -12075084 + CT-rich Low_complexity Low_complexity 3 157 0 1 1656 597 86 0 0 chr5 140462180 140462273 -12074986 + (TG)n Simple_repeat Simple_repeat 2 94 0 1 1656 237 182 0 0 chr5 140462302 140462338 -12074921 - B4 SINE B4 -59 233 198 1 1656 704 245 52 71 chr5 140462338 140462549 -12074710 - MTE2a LTR MaLR 0 379 173 1 1656 237 270 16 16 chr5 140462732 140462796 -12074463 - ID2 SINE ID -15 68 5 1 1656 289 170 19 0 chr5 140462798 140462851 -12074408 - ZP3AR Satellite Satellite -115 97 44 1 1656 1256 0 7 0 chr5 140462863 140463007 -12074252 + (TTCCC)n Simple_repeat Simple_repeat 2 146 0 1 1656 236 264 149 37 chr5 140463033 140463167 -12074092 - B1F SINE Alu 0 149 1 1 1656 289 222 222 0 chr5 140463374 140463464 -12073795 - RSINE1 SINE B4 -33 132 23 1 1656 460 275 152 0 chr5 140463595 140463733 -12073526 + RSINE1 SINE B4 7 165 0 1 1656 236 317 108 68 chr5 140463597 140463773 -12073486 + B2_Mm1a SINE B2 8 190 -3 1 1656 1488 73 16 10 chr5 140463789 140463983 -12073276 + B2_Mm2 SINE B2 1 195 0 1 1656 193 230 0 26 chr5 140464024 140464100 -12073159 + G-rich Low_complexity Low_complexity 2 75 0 1 1656 240 350 12 0 chr5 140464725 140464805 -12072454 + MLT1K LTR MaLR 136 216 -379 1 1656 459 288 213 23 chr5 140464854 140465028 -12072231 - B4 SINE B4 -5 287 81 1 1656 904 309 86 39 chr5 140465061 140465445 -12071814 - MTD LTR MaLR 0 419 18 1 1656 1257 265 196 33 chr5 140465468 140466408 -12070851 - MTD-int LTR MaLR -4 1254 48 1 1656 350 281 0 0 chr5 140466653 140466735 -12070524 + MTD LTR MaLR 4 85 -274 1 1656 450 53 0 0 chr5 140466854 140466911 -12070348 + (TC)n Simple_repeat Simple_repeat 1 57 0 1 1656 645 311 111 21 chr5 140466954 140467197 -12070062 - B4A SINE B4 -27 265 1 1 1656 207 0 0 0 chr5 140467307 140467330 -12069929 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1 1656 1009 80 73 0 chr5 140467344 140467481 -12069778 - B1_Mus2 SINE Alu 0 147 1 1 1656 616 234 44 0 chr5 140467692 140467829 -12069430 + MTD LTR MaLR 277 419 0 1 1656 303 121 0 0 chr5 140468129 140468187 -12069072 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1656 543 336 60 28 chr5 140468193 140468475 -12068784 - B4A SINE B4 0 292 2 1 1656 283 178 0 0 chr5 140468560 140468605 -12068654 - PB1D9 SINE Alu -75 45 1 1 1656 569 236 45 57 chr5 140468636 140468793 -12068466 - RSINE1 SINE B4 -10 155 1 1 1656 4027 220 48 90 chr5 140468871 140469939 -12067320 - RMER1B Other Other -1 1065 43 1 1656 1909 122 43 3 chr5 140470030 140470335 -12066924 + ORR1A2 LTR MaLR 3 319 -8 1 1656 322 154 39 0 chr5 140470666 140470744 -12066515 - RMER1B Other Other -928 138 58 1 1656 893 241 146 16 chr5 140471056 140471309 -12065950 - B4A SINE B4 -6 286 1 1 1656 593 241 23 43 chr5 140471314 140471486 -12065773 + ID_B1 SINE B4 56 222 -2 1 1656 292 306 60 0 chr5 140471841 140471975 -12065284 - L1M5 LINE L1 -3483 2663 2522 1 1656 207 146 0 0 chr5 140471977 140472018 -12065241 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1656 225 0 0 0 chr5 140472198 140472223 -12065036 + (G)n Simple_repeat Simple_repeat 1 25 0 1 1656 180 0 0 0 chr5 140472495 140472515 -12064744 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1656 626 303 11 21 chr5 140472583 140472772 -12064487 - B4A SINE B4 -105 187 1 1 1656 1058 208 14 36 chr5 140472878 140472900 -12064359 - B3 SINE B2 0 216 197 1 1656 261 0 0 0 chr5 140472900 140472929 -12064330 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1 1656 1058 208 14 36 chr5 140472929 140473126 -12064133 - B3 SINE B2 -20 196 2 1 1656 264 277 0 0 chr5 140473379 140473462 -12063797 + (CAGAGA)n Simple_repeat Simple_repeat 4 86 0 1 1656 580 204 0 0 chr5 140473462 140473570 -12063689 + B1_Mur2 SINE Alu 42 149 0 1 1656 357 242 71 0 chr5 140473680 140473779 -12063480 - PB1D10 SINE Alu -2 115 10 1 1656 583 232 67 48 chr5 140473916 140474124 -12063135 + B4A SINE B4 1 212 -80 1 1656 401 310 8 17 chr5 140474092 140474210 -12063049 + RSINE1 SINE B4 8 124 -41 1 1656 288 0 0 0 chr5 140474211 140474243 -12063016 + (CA)n Simple_repeat Simple_repeat 1 32 0 1 1656 22 35 0 0 chr5 140474368 140474397 -12062862 + AT_rich Low_complexity Low_complexity 1 29 0 1 1656 364 345 198 28 chr5 140474495 140474849 -12062410 + L1M5 LINE L1 4754 5174 -972 1 1656 234 0 0 0 chr5 140474849 140474875 -12062384 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1 1656 364 345 198 28 chr5 140474875 140474920 -12062339 + L1M5 LINE L1 5175 5221 -925 1 1656 694 239 27 64 chr5 140474949 140475168 -12062091 + B4A SINE B4 2 212 -80 1 1656 703 239 21 0 chr5 140475206 140475348 -12061911 + RSINE1 SINE B4 4 148 -17 1 1656 1089 82 0 0 chr5 140475372 140475507 -12061752 + B1_Mus2 SINE Alu 1 135 -12 1 1656 180 0 0 0 chr5 140475507 140475527 -12061732 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 1 1656 270 211 0 55 chr5 140475625 140475699 -12061560 + A-rich Low_complexity Low_complexity 2 72 0 1 1656 180 77 0 0 chr5 140475699 140475725 -12061534 + (CTA)n Simple_repeat Simple_repeat 3 28 0 1 1656 270 211 0 55 chr5 140475725 140475760 -12061499 + A-rich Low_complexity Low_complexity 73 104 0 1 1656 24 32 0 0 chr5 140476038 140476069 -12061190 + AT_rich Low_complexity Low_complexity 1 31 0 1 1656 560 281 108 47 chr5 140476108 140476321 -12060938 - B4A SINE B4 0 292 67 1 1656 438 20 0 0 chr5 140476779 140476830 -12060429 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1656 797 168 5 0 chr5 140476980 140477190 -12060069 + (TCCA)n Simple_repeat Simple_repeat 1 210 0 1 1656 368 258 10 40 chr5 140477247 140477348 -12059911 + PB1D10 SINE Alu 19 116 -1 1 1656 276 290 20 0 chr5 140477412 140477562 -12059697 + (TA)n Simple_repeat Simple_repeat 1 153 0 1 1656 742 293 78 61 chr5 140477957 140478149 -12059110 + B4 SINE B4 2 206 -86 1 1656 899 128 14 0 chr5 140478149 140478290 -12058969 + B1_Mur4 SINE Alu 8 150 0 1 1656 742 293 78 61 chr5 140478290 140478352 -12058907 + B4 SINE B4 207 274 -18 1 1656 816 100 0 0 chr5 140478354 140478474 -12058785 + (CACG)n Simple_repeat Simple_repeat 4 123 0 1 1656 24 53 0 0 chr5 140478918 140478956 -12058303 + AT_rich Low_complexity Low_complexity 1 38 0 1 1656 1239 186 78 45 chr5 140479315 140479668 -12057591 + MTD LTR MaLR 1 392 -8 1 1656 426 322 21 37 chr5 140479804 140479994 -12057265 + MER33 DNA MER1_type 33 219 -105 1 1656 730 86 267 0 chr5 140479996 140480112 -12057147 + B1_Mus2 SINE Alu 1 147 0 1 1656 258 173 0 0 chr5 140480113 140480188 -12057071 + A-rich Low_complexity Low_complexity 1 75 0 1 1656 654 287 112 16 chr5 140480285 140480543 -12056716 - B4A SINE B4 -8 284 2 1 1656 478 191 112 9 chr5 140480551 140480667 -12056592 - B1F SINE Alu -4 145 18 1 1656 384 271 98 30 chr5 140480552 140480685 -12056574 - ID_B1 SINE B4 -4 220 79 1 1656 258 250 83 0 chr5 140480684 140480756 -12056503 - U6 snRNA snRNA -21 86 9 1 1656 232 174 0 0 chr5 140480765 140480811 -12056448 - PB1D10 SINE Alu -29 88 43 1 1656 526 254 87 50 chr5 140480824 140481045 -12056214 + RLTR12B LTR ERVK 108 323 -245 1 1656 1243 170 36 5 chr5 140481338 140481557 -12055702 - URR1A DNA MER1_type 0 226 1 1 1656 756 196 92 0 chr5 140481730 140481893 -12055366 - B3A SINE B2 -20 178 1 1 1656 254 208 97 0 chr5 140482157 140482229 -12055030 - MLT1B LTR MaLR -150 240 162 1 1656 506 296 41 53 chr5 140482272 140482443 -12054816 - B4 SINE B4 0 292 124 1 1656 324 0 0 0 chr5 140482582 140482618 -12054641 + (TGGGGG)n Simple_repeat Simple_repeat 2 37 0 1 1656 378 228 0 12 chr5 140482633 140482713 -12054546 + RSINE1 SINE B4 72 150 -15 1 1656 387 0 0 0 chr5 140482715 140482758 -12054501 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1656 459 0 0 0 chr5 140483207 140483258 -12054001 + (TC)n Simple_repeat Simple_repeat 2 52 0 1 1656 185 83 0 27 chr5 140484145 140484182 -12053077 + (TGGGGG)n Simple_repeat Simple_repeat 3 38 0 1 1656 1873 59 8 27 chr5 140485670 140485932 -12051327 - L1_Mus3 LINE L1 -7 6631 6375 1 1656 349 303 0 0 chr5 140487607 140487683 -12049576 - ID4_ SINE ID -6 77 2 1 1656 1634 18 7 0 chr5 140487685 140488264 -12048995 - ZP3AR Satellite Satellite -11 582 1 1 1656 420 229 171 0 chr5 140488276 140488381 -12048878 - PB1 SINE Alu 0 127 5 1 1656 217 310 45 22 chr5 140490434 140490523 -12046736 + MIRm SINE MIR 65 155 -121 1 1656 505 239 154 0 chr5 140490800 140490927 -12046332 + B4A SINE B4 84 230 -62 1 1656 480 261 123 0 chr5 140490927 140491057 -12046202 + RSINE1 SINE B4 3 148 -17 1 1656 376 301 131 37 chr5 140491349 140491646 -12045613 + L1MEc LINE L1 475 799 -5601 1 1656 261 355 89 15 chr5 140492131 140492334 -12044925 + MLT1F2 LTR MaLR 197 414 -146 1 1656 361 342 54 0 chr5 140492432 140492616 -12044643 + L1MEc LINE L1 1376 1569 -4831 1 1656 2446 98 3 3 chr5 140492616 140492943 -12044316 - ORR1A2 LTR MaLR 0 327 1 1 1656 252 269 167 21 chr5 140493148 140493292 -12043967 - ZP3AR Satellite Satellite -30 182 18 1 1656 1102 36 0 0 chr5 140493248 140493387 -12043872 + B1_Mm SINE Alu 9 147 0 1 1656 1172 199 67 45 chr5 140493557 140493826 -12043433 - B4 SINE B4 -17 275 1 1 1656 385 283 20 80 chr5 140493955 140494105 -12043154 - ORR1E LTR MaLR -170 189 49 1 1656 576 283 202 8 chr5 140494302 140494544 -12042715 - B4 SINE B4 0 292 4 1 1656 260 337 48 24 chr5 140494900 140495067 -12042192 + L1MEc LINE L1 4717 4887 -1432 1 1656 24 32 0 0 chr5 140495068 140495099 -12042160 + AT_rich Low_complexity Low_complexity 1 31 0 1 1656 872 220 84 10 chr5 140495266 140495468 -12041791 - ID_B1 SINE B4 -6 218 2 1 1656 458 241 162 51 chr5 140495516 140495704 -12041555 + L1MC LINE L1 4981 5205 -941 1 1656 2918 150 67 8 chr5 140495704 140496195 -12041064 + RLTR28 LTR ERVL 1 520 -4 1 1656 458 241 162 51 chr5 140496195 140496321 -12040938 + L1MC LINE L1 5206 5330 -816 1 1656 419 263 81 15 chr5 140496321 140496458 -12040801 + RSINE1 SINE B4 1 144 -21 1 1656 341 299 62 57 chr5 140496576 140496753 -12040506 + B4A SINE B4 56 233 -59 1 1656 454 293 35 21 chr5 140496832 140496975 -12040284 + RSINE1 SINE B4 2 146 -19 1 1656 182 286 26 91 chr5 140497282 140497359 -12039900 - L4 LINE RTE -1596 433 362 1 1656 210 302 71 63 chr5 140502620 140502864 -12034395 + MIRc SINE MIR 4 255 -13 1 1656 468 198 130 16 chr5 140502955 140503078 -12034181 - B1_Mur1 SINE Alu -9 140 4 2 1656 360 0 0 0 chr5 140503088 140503128 -12034131 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1656 279 0 0 0 chr5 140503128 140503158 -12034101 + (GA)n Simple_repeat Simple_repeat 1 31 0 4 1656 739 239 54 0 chr5 140503194 140503361 -12033898 - B3A SINE B2 -22 176 1 5 1656 919 253 56 34 chr5 140503411 140503644 -12033615 - B4A SINE B4 -10 282 45 6 1656 459 250 0 29 chr5 140504079 140504182 -12033077 + B1_Mur1 SINE Alu 17 116 -33 7 1656 267 241 158 12 chr5 140504251 140504350 -12032909 - B1F1 SINE Alu -8 109 1 8 1656 252 269 50 100 chr5 140504350 140504400 -12032859 - MT2B2 LTR ERVL -433 168 125 9 1656 5990 113 61 13 chr5 140505480 140506394 -12030865 + RMER17B LTR ERVK 1 958 0 1 1656 183 80 0 0 chr5 140508303 140508328 -12028931 + (CAGCC)n Simple_repeat Simple_repeat 2 26 0 1 1657 304 330 89 6 chr5 140509939 140510119 -12027140 - MLT-int LTR MaLR -107 1628 1434 1 1657 465 84 0 0 chr5 140511620 140511691 -12025568 + (TCC)n Simple_repeat Simple_repeat 1 71 0 1 1657 192 77 0 0 chr5 140512445 140512471 -12024788 + (CAGGA)n Simple_repeat Simple_repeat 4 29 0 1 1657 2521 249 105 28 chr5 140515855 140516540 -12020719 + RCHARR1 DNA MER1_type 3 750 -224 1 1657 1022 255 52 52 chr5 140516540 140516830 -12020429 + B4 SINE B4 2 291 -1 1 1657 2521 249 105 28 chr5 140516830 140516974 -12020285 + RCHARR1 DNA MER1_type 751 896 -78 1 1657 811 170 42 7 chr5 140519369 140519511 -12017748 - B1_Mur2 SINE Alu -2 147 1 1 1657 540 293 65 50 chr5 140519524 140519725 -12017534 - B4A SINE B4 -88 204 1 1 1657 329 190 86 25 chr5 140519728 140519809 -12017450 - PB1D10 SINE Alu 0 117 32 1 1657 279 0 0 0 chr5 140524538 140524569 -12012690 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1657 735 52 0 0 chr5 140524569 140524664 -12012595 + (GA)n Simple_repeat Simple_repeat 1 96 0 2 1657 1132 219 120 37 chr5 140525153 140525503 -12011756 + MTE2b LTR MaLR 1 379 0 2 1657 269 231 46 0 chr5 140525645 140525710 -12011549 + PB1D7 SINE Alu 19 86 -34 2 1657 543 16 0 0 chr5 140525951 140526015 -12011244 + (GGAA)n Simple_repeat Simple_repeat 3 66 0 2 1657 403 155 59 12 chr5 140528019 140528104 -12009155 - B1_Mus1 SINE Alu -54 94 6 2 1657 471 312 0 40 chr5 140528107 140528257 -12009002 - B4 SINE B4 -86 206 63 2 1657 493 198 0 0 chr5 140528308 140528404 -12008855 - PB1D10 SINE Alu -21 96 1 2 1657 282 297 60 43 chr5 140528309 140528425 -12008834 - B4 SINE B4 -105 187 70 2 1657 241 238 74 12 chr5 140528427 140528508 -12008751 + L1MEc LINE L1 1041 1126 -5274 2 1657 354 275 16 55 chr5 140528670 140528687 -12008572 - ZP3AR Satellite Satellite -53 159 146 3 1657 319 301 0 24 chr5 140528687 140528772 -12008487 - ID4 SINE ID 0 83 1 3 1657 354 275 16 55 chr5 140528772 140528881 -12008378 - ZP3AR Satellite Satellite -67 145 38 3 1657 450 231 58 0 chr5 140528935 140529039 -12008220 - RSINE1 SINE B4 -54 111 2 3 1657 526 259 28 14 chr5 140529043 140529188 -12008071 - B1F SINE Alu -2 147 1 3 1657 231 294 126 54 chr5 140529249 140529526 -12007733 + L1MEc LINE L1 1495 1791 -4624 2 1657 416 267 57 43 chr5 140529895 140530036 -12007223 + B3A SINE B2 34 176 -22 3 1657 796 278 87 9 chr5 140530022 140530251 -12007008 - B4 SINE B4 -4 288 42 3 1657 361 239 105 32 chr5 140530283 140530378 -12006881 - B1F SINE Alu -6 143 42 3 1657 1326 118 5 50 chr5 140531774 140531996 -12005263 + URR1B DNA MER1_type 14 225 0 3 1657 551 237 17 0 chr5 140534258 140534376 -12002883 + MTEb LTR MaLR 1 120 -239 3 1657 707 127 16 8 chr5 140534374 140534501 -12002758 - ZP3AR Satellite Satellite -33 179 52 3 1657 593 214 15 148 chr5 140534536 140534739 -12002520 + MTEb LTR MaLR 204 379 0 3 1657 270 254 139 9 chr5 140535178 140535293 -12001966 + L1MC LINE L1 5696 5825 -508 4 1657 346 233 58 0 chr5 140535303 140535389 -12001870 + PB1D7 SINE Alu 24 114 -6 4 1657 264 250 12 36 chr5 140535452 140535535 -12001724 + ID4 SINE ID 1 81 -2 4 1657 308 221 22 55 chr5 140535951 140536042 -12001217 + MER58B DNA MER1_type 114 201 -140 4 1657 244 212 61 0 chr5 140536930 140536996 -12000263 + PB1D10 SINE Alu 43 112 -5 4 1657 276 156 68 16 chr5 140537031 140537128 -12000131 + B4 SINE B4 45 147 -145 4 1657 525 268 168 28 chr5 140538785 140539035 -11998224 + B4 SINE B4 8 292 0 4 1657 254 232 0 80 chr5 140539986 140540061 -11997198 - B1_Mur1 SINE Alu -4 145 77 4 1657 311 228 24 48 chr5 140540192 140540275 -11996984 + ID4_ SINE ID 3 83 0 4 1657 511 272 126 26 chr5 140540375 140540605 -11996654 + Helitron1Nb_Mam RC Helitron 197 449 -667 4 1657 456 72 0 0 chr5 140542523 140542592 -11994667 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 5 1657 896 254 86 11 chr5 140543612 140543879 -11993380 + RMER15 LTR ERVL 273 559 -16 5 1657 192 216 0 0 chr5 140543915 140543952 -11993307 - MIRc SINE MIR -119 149 113 5 1657 444 257 28 122 chr5 140546025 140546238 -11991021 - B2_Mm2 SINE B2 -2 193 1 5 1657 1002 295 114 13 chr5 140546241 140546619 -11990640 + MTD LTR MaLR 4 419 0 5 1657 739 216 94 0 chr5 140546823 140546996 -11990263 + ID_B1 SINE B4 35 222 -2 5 1657 354 45 0 0 chr5 140547601 140547645 -11989614 + (TG)n Simple_repeat Simple_repeat 2 45 0 5 1657 1754 188 61 71 chr5 140547722 140548100 -11989159 - ORR1D1 LTR MaLR 0 374 1 5 1657 22 0 0 0 chr5 140549152 140549174 -11988085 + AT_rich Low_complexity Low_complexity 1 22 0 5 1657 960 189 168 5 chr5 140551474 140551665 -11985594 + ID_B1 SINE B4 3 224 0 5 1657 781 99 54 40 chr5 140552658 140552806 -11984453 + URR1A DNA MER1_type 77 226 0 6 1657 392 294 50 38 chr5 140552869 140553028 -11984231 + RMER15 LTR ERVL 347 507 -68 6 1657 729 258 80 31 chr5 140553314 140553538 -11983721 + B4A SINE B4 44 278 -14 6 1657 459 0 0 0 chr5 140553542 140553593 -11983666 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1657 335 386 11 33 chr5 140554700 140554834 -11982425 + (CGTG)n Simple_repeat Simple_repeat 1 131 0 6 1657 261 0 0 0 chr5 140554834 140554863 -11982396 + (TG)n Simple_repeat Simple_repeat 1 29 0 6 1657 335 386 11 33 chr5 140554863 140554910 -11982349 + (CGTG)n Simple_repeat Simple_repeat 2 48 0 6 1657 326 302 65 19 chr5 140554966 140555074 -11982185 + RSINE1 SINE B4 53 165 0 6 1657 597 287 63 6 chr5 140555111 140555286 -11981973 - B4 SINE B4 -100 192 8 6 1657 376 284 35 56 chr5 140555520 140555662 -11981597 + MTE-int LTR MaLR 359 497 -1083 6 1657 524 284 48 48 chr5 140555854 140556061 -11981198 + RMER15 LTR ERVL 326 532 -43 7 1657 1232 54 0 0 chr5 140556144 140556292 -11980967 + B1_Mus1 SINE Alu 1 148 0 7 1657 378 222 11 22 chr5 140556512 140556604 -11980655 - ID_B1 SINE B4 -26 198 108 7 1657 227 250 12 70 chr5 140556537 140556616 -11980643 - B1_Mm SINE Alu -54 93 20 7 1657 866 263 212 0 chr5 140556616 140556961 -11980298 + MTD LTR MaLR 1 407 -14 7 1657 1163 276 133 14 chr5 140557114 140557929 -11979330 + L1ME1 LINE L1 5097 6114 -70 7 1657 247 200 183 0 chr5 140558774 140558834 -11978425 + tRNA-Ala-GCG tRNA tRNA 2 72 -3 7 1657 218 269 223 11 chr5 140560321 140560415 -11976844 - PB1D7 SINE Alu -5 115 2 7 1657 1362 65 44 3 chr5 140561540 140561777 -11975482 - ZP3AR Satellite Satellite -2 246 1 7 1657 252 219 54 14 chr5 140561824 140561898 -11975361 - MER58B DNA MER1_type -142 199 123 7 1657 461 222 8 2 chr5 140562423 140562538 -11974721 + PB1D10 SINE Alu 1 117 -32 8 1657 438 262 32 8 chr5 140565104 140565227 -11972032 + B1F SINE Alu 21 146 -3 8 1657 476 199 45 160 chr5 140565201 140565357 -11971902 + ZP3AR Satellite Satellite 11 148 -64 8 1657 272 274 48 0 chr5 140565357 140565419 -11971840 + ID4_ SINE ID 2 66 -17 8 1657 562 206 42 42 chr5 140565884 140566026 -11971233 - B3 SINE B2 -4 212 71 8 1657 222 228 50 112 chr5 140566155 140566235 -11971024 + B1F SINE Alu 32 117 0 8 1657 344 268 129 25 chr5 140566357 140566539 -11970720 + L1M5 LINE L1 5254 5461 -898 8 1657 288 0 0 0 chr5 140567315 140567347 -11969912 + (TG)n Simple_repeat Simple_repeat 2 33 0 8 1657 888 176 7 0 chr5 140568147 140568289 -11968970 + B1_Mur1 SINE Alu 1 143 -6 8 1657 219 114 0 0 chr5 140568318 140568353 -11968906 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 8 1657 271 342 80 11 chr5 140568542 140568724 -11968535 + L2a LINE L2 3231 3386 -40 9 1657 454 279 178 54 chr5 140570272 140570514 -11966745 - B4A SINE B4 -18 274 3 9 1657 1153 51 0 7 chr5 140570544 140570683 -11966576 + B1_Mus2 SINE Alu 2 139 -8 9 1657 261 0 0 0 chr5 140570683 140570712 -11966547 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9 1657 743 241 26 6 chr5 140570723 140570917 -11966342 + B3A SINE B2 2 206 -10 9 1657 563 247 68 80 chr5 140570921 140571084 -11966175 + RSINE1 SINE B4 5 165 0 9 1657 270 0 0 0 chr5 140571084 140571114 -11966145 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 9 1657 252 59 0 0 chr5 140571950 140571984 -11965275 + (TG)n Simple_repeat Simple_repeat 2 35 0 9 1657 709 227 52 38 chr5 140573882 140574093 -11963166 - ID_B1 SINE B4 -5 219 6 9 1657 637 285 180 0 chr5 140574120 140574453 -11962806 - L1MB3 LINE L1 -47 6136 5744 9 1657 379 260 10 10 chr5 140574564 140574661 -11962598 - PB1D10 SINE Alu 0 117 21 1 1657 645 215 23 0 chr5 140575141 140575271 -11961988 + ZP3AR Satellite Satellite 50 182 -30 1 1657 219 276 92 0 chr5 140575237 140575313 -11961946 + ID4 SINE ID 1 83 0 1 1657 417 109 0 0 chr5 140575316 140575380 -11961879 + (GGA)n Simple_repeat Simple_repeat 3 66 0 1 1657 476 224 40 59 chr5 140576324 140576476 -11960783 + B1F SINE Alu 1 149 0 1 1657 277 235 0 0 chr5 140576480 140576531 -11960728 + ZP3AR Satellite Satellite 45 95 -117 1 1657 317 234 39 13 chr5 140576532 140576610 -11960649 + ID4 SINE ID 3 82 -1 1 1657 860 220 77 20 chr5 140577854 140578100 -11959159 + L1ME2z LINE L1 6182 6441 -3 1 1657 226 260 182 0 chr5 140578471 140578548 -11958711 - PB1D10 SINE Alu -15 102 12 1 1657 460 67 0 96 chr5 140581819 140581902 -11955357 - URR1B DNA MER1_type -2 223 149 1 1657 233 238 115 0 chr5 140582002 140582124 -11955135 + L1MD LINE L1 2804 2939 -3207 1 1657 217 192 18 71 chr5 140582288 140582344 -11954915 - PB1D9 SINE Alu -6 114 62 1 1657 258 232 72 0 chr5 140582469 140582538 -11954721 + B4 SINE B4 1 74 -218 1 1657 2751 154 40 85 chr5 140582535 140583138 -11954121 + RMER4B LTR ERVK 10 585 0 1 1657 280 319 21 0 chr5 140583146 140583220 -11954039 + B4A SINE B4 69 142 -150 1 1657 1261 149 67 0 chr5 140583220 140583428 -11953831 + URR1B DNA MER1_type 1 222 -3 1 1657 352 282 26 26 chr5 140583428 140583542 -11953717 + B4 SINE B4 143 292 0 1 1657 313 336 67 7 chr5 140584176 140584311 -11952948 + ID_B1 SINE B4 81 223 -1 1 1657 290 270 40 0 chr5 140584327 140584401 -11952858 + ID4_ SINE ID 3 79 -4 1 1657 225 89 89 0 chr5 140584767 140584823 -11952436 + A-rich Low_complexity Low_complexity 4 64 0 1 1657 697 220 35 5 chr5 140584848 140585022 -11952237 + B3 SINE B2 3 188 -10 1 1657 311 263 116 0 chr5 140585052 140585147 -11952112 + RSINE1 SINE B4 25 130 -35 1 1657 249 33 0 0 chr5 140585180 140585210 -11952049 + (CA)n Simple_repeat Simple_repeat 1 30 0 1 1657 236 290 72 8 chr5 140585412 140585537 -11951722 + L1M3 LINE L1 4376 4508 -1632 1 1657 483 229 105 105 chr5 140585591 140585732 -11951527 + B3 SINE B2 6 150 -66 1 1657 459 78 0 0 chr5 140585732 140585796 -11951463 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1657 334 229 105 105 chr5 140585796 140585825 -11951434 + B2_Mm2 SINE B2 148 175 -20 1 1657 245 278 297 32 chr5 140586143 140586328 -11950931 + B4 SINE B4 24 257 -35 1 1657 261 0 0 0 chr5 140586606 140586635 -11950624 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1657 462 248 17 60 chr5 140586638 140586754 -11950505 + PB1D10 SINE Alu 1 111 -6 1 1657 589 184 56 0 chr5 140587497 140587622 -11949637 - ID_B1 SINE B4 -9 215 84 1 1657 350 331 164 28 chr5 140587667 140588174 -11949085 - L1MD LINE L1 -2793 3353 2778 1 1657 790 258 62 51 chr5 140589258 140589515 -11947744 - B4A SINE B4 -8 284 25 1 1657 1510 192 121 6 chr5 140590240 140590555 -11946704 + MTD LTR MaLR 69 419 0 1 1657 260 227 29 29 chr5 140591620 140591688 -11945571 + L2 LINE L2 2812 2879 -540 1 1657 698 311 49 4 chr5 140592563 140592789 -11944470 + B4A SINE B4 57 292 0 1 1657 713 309 118 20 chr5 140594110 140594364 -11942895 - B4 SINE B4 -13 279 1 1 1657 676 190 28 122 chr5 140594667 140594847 -11942412 - RSINE1 SINE B4 -1 164 2 1 1657 226 217 50 0 chr5 140595142 140595202 -11942057 - L1M6 LINE L1 -4038 2458 2396 1 1657 249 371 10 87 chr5 140595677 140595864 -11941395 + MLT2B1 LTR ERVL 373 556 0 1 1657 1658 42 0 0 chr5 140596045 140596238 -11941021 - B2_Mm1a SINE B2 0 193 1 1 1657 1437 49 13 0 chr5 140597356 140597683 -11939576 - ZP3AR Satellite Satellite -34 331 1 1 1657 314 252 40 105 chr5 140599020 140599081 -11938178 + PB1D10 SINE Alu 2 117 0 1 1657 329 191 16 0 chr5 140599081 140599144 -11938115 + ID_B1 SINE B4 161 224 0 1 1657 287 226 0 0 chr5 140599848 140599910 -11937349 + L1M4 LINE L1 4632 4693 -1453 1 1657 1320 243 30 102 chr5 140599915 140600318 -11936941 - MTEa LTR MaLR 0 379 6 1 1657 453 329 103 59 chr5 140600397 140600939 -11936320 + L1M4 LINE L1 4772 5337 -809 1 1657 532 190 68 8 chr5 140603152 140603269 -11933990 + B3 SINE B2 9 132 -84 1 1657 514 189 0 59 chr5 140603275 140603393 -11933866 + PB1D9 SINE Alu 5 115 -5 1 1657 1512 69 16 0 chr5 140603411 140603600 -11933659 - B2_Mm2 SINE B2 -3 192 1 1 1657 922 240 44 5 chr5 140603603 140603808 -11933451 - B3 SINE B2 0 216 4 1 1657 590 293 30 6 chr5 140603839 140604004 -11933255 - ID_B1 SINE B4 -33 191 23 1 1657 401 243 18 27 chr5 140605215 140605325 -11931934 + PB1D10 SINE Alu 1 109 -8 1 1657 590 287 65 39 chr5 140605336 140605568 -11931691 + B4 SINE B4 2 239 -53 1 1657 203 333 0 0 chr5 140605571 140605649 -11931610 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 1657 1243 150 332 14 chr5 140606443 140606762 -11930497 - MTC LTR MaLR 0 421 1 1 1657 397 311 162 12 chr5 140606820 140607061 -11930198 + B4 SINE B4 1 277 -15 1 1657 288 351 18 11 chr5 140610016 140610210 -11927049 + L1M5 LINE L1 5254 5449 -995 1 1657 653 297 77 56 chr5 140610399 140610684 -11926575 + B4 SINE B4 2 292 0 1 1657 183 42 0 0 chr5 140610707 140610731 -11926528 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1657 1317 72 60 16 chr5 140610782 140610967 -11926292 + B2_Mm2 SINE B2 2 194 -1 1 1657 1459 73 5 0 chr5 140610981 140611172 -11926087 + B2_Mm1t SINE B2 2 193 0 1 1657 252 0 0 0 chr5 140611172 140611200 -11926059 + (GAAA)n Simple_repeat Simple_repeat 4 31 0 1 1657 725 264 17 6 chr5 140613745 140613924 -11923335 + B4A SINE B4 24 204 -88 1 1657 237 65 0 0 chr5 140615086 140615117 -11922142 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 1657 1145 43 0 0 chr5 140615118 140615258 -11922001 - B1_Mm SINE Alu -6 141 2 1 1657 2562 129 11 64 chr5 140615258 140615729 -11921530 + RLTR11B LTR ERVK 8 453 0 1 1657 247 361 23 0 chr5 140617865 140617998 -11919261 - BC1_Mm scRNA scRNA -16 136 1 1 1657 525 135 11 0 chr5 140617962 140618051 -11919208 - ZP3AR Satellite Satellite -81 131 42 1 1657 426 261 22 29 chr5 140618072 140618210 -11919049 - ID_B1 SINE B4 0 224 88 1 1657 2613 34 0 0 chr5 140618816 140619137 -11918122 - L1Md_A LINE L1 0 6582 6262 1 1657 319 70 0 0 chr5 140619137 140619180 -11918079 + L1Md_F2 LINE L1 6273 6315 -267 1 1657 210 37 0 0 chr5 140620819 140620846 -11916413 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1657 1140 62 0 0 chr5 140621727 140621873 -11915386 - B1_Mus1 SINE Alu -1 147 2 1 1657 737 233 99 43 chr5 140622849 140623060 -11914199 + B4A SINE B4 3 225 -67 1 1657 321 282 214 0 chr5 140623068 140623199 -11914060 + RSINE1 SINE B4 3 161 -4 1 1657 214 211 39 0 chr5 140623218 140623270 -11913989 + GA-rich Low_complexity Low_complexity 4 57 0 1 1657 338 315 60 97 chr5 140623300 140623567 -11913692 - RMER15 LTR ERVL -43 532 276 1 1657 198 316 82 21 chr5 140623789 140623886 -11913373 - MIR SINE MIR -67 141 39 1 1657 1061 292 33 6 chr5 140624317 140624654 -11912605 - ORR1E LTR MaLR -1 358 13 1 1657 250 189 26 26 chr5 140625258 140625334 -11911925 + C-rich Low_complexity Low_complexity 4 79 0 1 1657 1289 276 104 12 chr5 140627172 140627594 -11909665 + MT2A LTR ERVL 1 461 -72 1 1657 243 315 0 22 chr5 140628694 140628785 -11908474 + B4 SINE B4 35 123 -169 1 1657 328 270 110 62 chr5 140629297 140629443 -11907816 + B3 SINE B2 9 161 -55 1 1657 612 81 0 0 chr5 140629455 140629542 -11907717 + (TC)n Simple_repeat Simple_repeat 1 87 0 1 1657 378 303 22 22 chr5 140629748 140629883 -11907376 + B1F SINE Alu 10 144 -5 1 1657 896 140 18 18 chr5 140629979 140630146 -11907113 + ZP3AR Satellite Satellite 35 201 -11 1 1657 234 227 0 96 chr5 140630146 140630219 -11907040 + ID4 SINE ID 1 66 -17 1 1657 824 159 69 44 chr5 140630219 140630275 -11906984 + ZP3AR Satellite Satellite 149 212 0 1 1657 570 241 31 70 chr5 140630280 140630609 -11906650 + L1MCa LINE L1 2181 2504 -3817 1 1657 633 163 106 0 chr5 140630618 140630741 -11906518 + URR1B DNA MER1_type 1 136 -89 1 1657 1896 153 13 0 chr5 140630745 140631059 -11906200 - ORR1A3 LTR MaLR -8 318 1 1 1657 494 165 10 10 chr5 140631059 140631148 -11906111 + URR1B DNA MER1_type 132 220 -5 1 1657 395 243 184 7 chr5 140631151 140631304 -11905955 + B3 SINE B2 2 185 -13 1 1657 673 294 168 31 chr5 140631418 140631800 -11905459 + L1MCa LINE L1 2634 3081 -3240 1 1657 180 0 0 0 chr5 140631800 140631820 -11905439 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1657 673 294 168 31 chr5 140631820 140632052 -11905207 + L1MCa LINE L1 3082 3332 -2989 1 1657 367 282 174 38 chr5 140632135 140632371 -11904888 + B4 SINE B4 2 269 -23 1 1657 270 0 0 0 chr5 140632404 140632434 -11904825 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1657 321 254 20 46 chr5 140633187 140633307 -11903952 + PB1 SINE Alu 1 117 0 1 1657 637 195 134 0 chr5 140633411 140633560 -11903699 + B3A SINE B2 2 170 -28 1 1657 518 222 68 0 chr5 140633921 140634038 -11903221 + ID_B1 SINE B4 93 217 -7 1 1657 798 205 7 100 chr5 140634399 140634615 -11902644 + ZP3AR Satellite Satellite 1 195 0 1 1657 239 267 17 0 chr5 140634579 140634639 -11902620 + ID4_ SINE ID 1 61 -22 1 1657 237 329 29 0 chr5 140634585 140634655 -11902604 + tRNA-Ala-GCA tRNA tRNA 2 73 -2 1 1657 336 306 27 0 chr5 140635210 140635321 -11901938 - PB1D9 SINE Alu -5 115 2 1 1657 259 324 39 74 chr5 140635518 140635748 -11901511 + ORR1E LTR MaLR 7 228 -131 1 1657 262 218 26 0 chr5 140636042 140636120 -11901139 + L1MC LINE L1 3161 3240 -2906 2 1657 450 285 9 102 chr5 140636120 140636335 -11900924 + B3A SINE B2 3 197 -1 2 1657 606 196 227 23 chr5 140636455 140636627 -11900632 + B3 SINE B2 1 207 -9 2 1657 264 269 30 0 chr5 140636669 140636736 -11900523 + B4A SINE B4 31 99 -193 2 1657 794 230 9 75 chr5 140636762 140636974 -11900285 + B3A SINE B2 1 198 0 2 1657 231 250 167 0 chr5 140636985 140637045 -11900214 + B4A SINE B4 223 292 0 2 1657 387 370 29 48 chr5 140637097 140637307 -11899952 + B4A SINE B4 1 206 -86 2 1657 287 269 32 0 chr5 140637503 140637596 -11899663 + L1M5 LINE L1 3861 3956 -2190 2 1657 374 273 83 39 chr5 140637621 140637777 -11899482 + RSINE1 SINE B4 3 165 0 2 1657 268 279 11 44 chr5 140638174 140638264 -11898995 + ID_B1 SINE B4 130 216 -8 2 1657 295 272 0 24 chr5 140638191 140638274 -11898985 + B1F1 SINE Alu 69 149 0 2 1657 342 278 90 15 chr5 140638382 140638536 -11898723 + MTEb LTR MaLR 11 171 -208 2 1657 869 301 66 24 chr5 140638520 140638809 -11898450 + ORR1E LTR MaLR 5 305 -54 2 1657 472 295 103 80 chr5 140638987 140639289 -11897970 + ORR1E LTR MaLR 47 355 -4 2 1657 306 367 52 57 chr5 140639335 140639546 -11897713 + L1M5 LINE L1 5081 5290 -856 2 1657 250 354 77 0 chr5 140639711 140639840 -11897419 - MTE2b LTR MaLR -1 378 241 2 207 371 221 135 0 chr5 140640219 140640323 -11896936 - B1F SINE Alu -9 118 1 2 1658 504 286 62 15 chr5 140640981 140641176 -11896083 - MamRep434 DNA TcMar -5 421 218 2 1658 824 136 147 6 chr5 140642779 140642942 -11894317 + URR1A DNA MER1_type 41 226 0 2 1658 369 141 311 39 chr5 140643831 140643934 -11893325 + B1_Mus1 SINE Alu 1 131 -17 2 1658 776 273 21 6 chr5 140644351 140644545 -11892714 - ID_B1 SINE B4 -39 253 50 2 1658 467 265 71 47 chr5 140644669 140644839 -11892420 - RMER30 DNA MER1_type -22 180 7 2 1658 5260 111 48 68 chr5 140645534 140645609 -11891650 + RMER17B LTR ERVK 1 75 -883 2 1658 1144 55 7 0 chr5 140645609 140645755 -11891504 + B1_Mus1 SINE Alu 2 148 0 2 1658 5260 111 48 68 chr5 140645755 140646657 -11890602 + RMER17B LTR ERVK 76 958 0 2 1658 242 293 195 0 chr5 140647322 140647445 -11889814 - L1MC3 LINE L1 -1107 6678 6532 2 1658 253 288 68 0 chr5 140648055 140648128 -11889131 + ID4_ SINE ID 6 83 0 2 1658 559 317 109 19 chr5 140648229 140648550 -11888709 + MER67B LTR ERV1 279 628 -33 2 1658 359 266 109 29 chr5 140649111 140649285 -11887974 + RMER15 LTR ERVL 388 575 0 2 1658 1205 51 96 11 chr5 140649447 140649595 -11887664 + B2_Mm1a SINE B2 1 160 -33 2 1658 387 0 0 0 chr5 140649595 140649638 -11887621 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 2 1658 1205 51 96 11 chr5 140649638 140649666 -11887593 + B2_Mm1a SINE B2 161 192 -1 2 1658 367 305 119 45 chr5 140653633 140653901 -11883358 + B4A SINE B4 5 292 0 2 1658 318 26 0 0 chr5 140653956 140653995 -11883264 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2 1658 539 228 8 52 chr5 140654001 140654135 -11883124 + B1_Mur1 SINE Alu 1 128 -21 2 1658 681 146 0 0 chr5 140654974 140655077 -11882182 - PB1D9 SINE Alu -9 111 9 2 1658 243 79 0 0 chr5 140655828 140655866 -11881393 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 2 1658 283 321 171 18 chr5 140656696 140656807 -11880452 + ID_B1 SINE B4 24 151 -73 2 1658 1006 51 73 0 chr5 140656807 140656944 -11880315 + B1_Mus2 SINE Alu 1 147 0 2 1658 207 0 0 0 chr5 140656946 140656969 -11880290 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1658 818 216 60 5 chr5 140657349 140657549 -11879710 + B3 SINE B2 1 211 -5 2 1658 791 103 17 0 chr5 140657572 140657689 -11879570 - PB1D9 SINE Alu 0 120 2 2 1658 261 0 0 0 chr5 140658368 140658397 -11878862 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1658 549 245 125 83 chr5 140658463 140658703 -11878556 + B4A SINE B4 20 269 -23 2 1658 387 0 0 0 chr5 140658703 140658746 -11878513 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1658 274 226 0 16 chr5 140659213 140659276 -11877983 + PB1D10 SINE Alu 22 83 -34 2 1658 439 325 32 13 chr5 140659947 140660103 -11877156 + B4A SINE B4 2 160 -132 2 1658 327 312 42 26 chr5 140660465 140660646 -11876613 + L1MC2 LINE L1 5708 5893 -451 2 1658 871 271 78 0 chr5 140660646 140660915 -11876344 + B4 SINE B4 1 290 -2 2 1658 606 245 86 0 chr5 140662040 140662191 -11875068 + B3A SINE B2 1 164 -34 2 1658 266 306 69 13 chr5 140662305 140662464 -11874795 + L1M5 LINE L1 4457 4624 -1522 2 1658 491 275 19 77 chr5 140662653 140662862 -11874397 - B3A SINE B2 0 198 2 2 1658 223 259 0 0 chr5 140662862 140662916 -11874343 + CT-rich Low_complexity Low_complexity 2 55 0 2 1658 298 298 145 24 chr5 140662926 140663050 -11874209 - RSINE1 SINE B4 -24 141 3 2 1658 261 327 81 9 chr5 140663158 140663269 -11873990 - PB1 SINE Alu 0 127 9 2 1658 431 320 49 56 chr5 140663454 140663742 -11873517 + L1M5 LINE L1 4927 5212 -934 2 1658 2815 52 42 5 chr5 140664346 140664731 -11872528 + MTB LTR MaLR 1 399 -1 2 1658 450 0 0 0 chr5 140664896 140664946 -11872313 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 1658 1131 41 7 7 chr5 140665956 140666102 -11871157 + B1_Mm SINE Alu 1 146 -1 2 1658 792 244 92 5 chr5 140666224 140666430 -11870829 + B4 SINE B4 3 226 -66 2 1658 380 298 78 31 chr5 140666436 140666564 -11870695 + RSINE1 SINE B4 32 165 0 2 1658 349 250 13 0 chr5 140666577 140666653 -11870606 + B4 SINE B4 216 292 0 2 1658 22 0 0 0 chr5 140666893 140666915 -11870344 + AT_rich Low_complexity Low_complexity 1 22 0 2 1658 264 231 23 93 chr5 140669458 140669544 -11867715 - PB1D10 SINE Alu 0 117 38 2 1658 276 303 0 0 chr5 140670551 140670617 -11866642 - ID4_ SINE ID -2 81 16 2 1658 783 233 27 23 chr5 140670582 140670788 -11866471 - ZP3AR Satellite Satellite -14 206 1 2 1658 245 252 49 90 chr5 140670791 140670913 -11866346 - PB1D10 SINE Alu 0 117 1 2 1658 620 288 5 96 chr5 140671423 140671642 -11865617 + B4 SINE B4 1 199 -93 2 1658 263 123 35 0 chr5 140671647 140671704 -11865555 + (CAGA)n Simple_repeat Simple_repeat 4 62 0 2 1658 212 311 33 0 chr5 140673038 140673099 -11864160 - ID2 SINE ID -11 72 10 2 1658 801 269 76 38 chr5 140673153 140673416 -11863843 - B4A SINE B4 -19 273 1 2 1658 1545 42 5 0 chr5 140673427 140673619 -11863640 - B2_Mm1t SINE B2 0 193 1 2 1658 339 256 69 49 chr5 140675770 140675914 -11861345 + RLTR42-int LTR ERVK 1165 1311 -4211 2 1658 800 173 0 85 chr5 140676201 140676365 -11860894 + B1_Mur4 SINE Alu 1 150 0 2 1658 1481 55 10 0 chr5 140676513 140676712 -11860547 + L1_Mus1 LINE L1 6367 6567 0 2 1658 749 248 92 19 chr5 140676749 140676955 -11860304 + ID_B1 SINE B4 2 222 -2 2 1658 569 196 54 0 chr5 140676964 140677076 -11860183 + B1_Mur3 SINE Alu 6 123 -26 2 1658 263 233 14 0 chr5 140680026 140680099 -11857160 + C-rich Low_complexity Low_complexity 3 76 0 2 1658 306 239 0 0 chr5 140680100 140680276 -11856983 + (CCCTG)n Simple_repeat Simple_repeat 3 178 0 2 1658 25 31 0 0 chr5 140680365 140680397 -11856862 + AT_rich Low_complexity Low_complexity 1 32 0 2 1658 216 233 82 0 chr5 140680946 140681019 -11856240 + ID4_ SINE ID 3 81 -2 2 1658 239 239 33 33 chr5 140681019 140681140 -11856119 + (TAGA)n Simple_repeat Simple_repeat 1 121 0 2 1658 284 311 44 22 chr5 140681145 140681184 -11856075 + B4 SINE B4 61 99 -193 2 1658 885 19 0 0 chr5 140681184 140681287 -11855972 + (TGG)n Simple_repeat Simple_repeat 2 104 0 2 1658 284 311 44 22 chr5 140681287 140681382 -11855877 + B4 SINE B4 100 197 -95 2 1658 525 208 8 32 chr5 140681382 140681411 -11855848 + B1_Mur3 SINE Alu 18 138 -11 2 1658 195 42 0 0 chr5 140682042 140682066 -11855193 + (TC)n Simple_repeat Simple_repeat 2 25 0 2 1658 486 246 18 0 chr5 140684032 140684146 -11853113 + PB1D9 SINE Alu 5 120 0 2 1658 447 78 0 0 chr5 140684146 140684210 -11853049 + (GGGA)n Simple_repeat Simple_repeat 4 67 0 2 1658 908 203 44 5 chr5 140685701 140685904 -11851355 + B3 SINE B2 3 213 -3 2 1658 251 233 88 55 chr5 140686187 140686278 -11850981 + MTEa LTR MaLR 21 114 -245 2 1658 312 308 8 48 chr5 140686349 140686475 -11850784 + MTEa LTR MaLR 252 372 -7 2 1658 553 225 9 0 chr5 140686951 140687062 -11850197 + PB1D10 SINE Alu 1 112 -5 2 1658 412 322 159 25 chr5 140687827 140688072 -11849187 - B4 SINE B4 -14 278 1 2 1658 811 268 14 14 chr5 140689233 140689441 -11847818 + ID_B1 SINE B4 1 208 -16 2 1658 1181 48 0 0 chr5 140689534 140689680 -11847579 - B1_Mm SINE Alu 0 147 2 2 1658 180 0 0 0 chr5 140690173 140690193 -11847066 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 2 1658 642 280 67 4 chr5 140690538 140690766 -11846493 - ID_B1 SINE B4 -44 248 9 2 1658 311 327 9 0 chr5 140690773 140690883 -11846376 - L1M4 LINE L1 -996 5150 5040 2 1658 275 312 83 106 chr5 140690971 140691498 -11845761 + L1ME4a LINE L1 5602 6116 -8 2 1658 397 249 31 0 chr5 140692944 140693061 -11844198 + B1_Mur2 SINE Alu 7 135 -14 2 1658 723 244 6 6 chr5 140693517 140693678 -11843581 + ID_B1 SINE B4 1 161 -63 2 1658 1015 129 18 0 chr5 140694789 140694959 -11842300 - ZP3AR Satellite Satellite -25 187 15 2 1658 1024 184 75 0 chr5 140696822 140697023 -11840236 + B3 SINE B2 1 216 0 2 1658 859 301 35 24 chr5 140698081 140698370 -11838889 - B4A SINE B4 0 292 1 2 1658 350 260 26 0 chr5 140698375 140698452 -11838807 - BC1_Mm scRNA scRNA -69 83 5 2 1658 282 263 15 1 chr5 140698489 140698562 -11838697 - B1_Mur2 SINE Alu -20 100 28 2 1658 555 265 15 0 chr5 140698682 140698814 -11838445 + ID_B1 SINE B4 89 222 -2 2 1658 1181 236 72 64 chr5 140700247 140700622 -11836637 + MTEa LTR MaLR 1 378 -1 3 1658 323 209 147 37 chr5 140700693 140700802 -11836457 - B1F SINE Alu 0 149 29 3 1658 1117 284 129 2 chr5 140701736 140702146 -11835113 + Lx8 LINE L1 6882 7343 -130 3 1658 387 0 0 0 chr5 140702202 140702245 -11835014 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1658 198 0 0 0 chr5 140702266 140702288 -11834971 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 1658 677 197 42 7 chr5 140702315 140702458 -11834801 - B1_Mur4 SINE Alu -2 148 1 3 1658 21 0 0 0 chr5 140702458 140702479 -11834780 + AT_rich Low_complexity Low_complexity 1 21 0 3 1658 850 220 100 9 chr5 140703345 140703549 -11833710 + B4 SINE B4 8 231 -61 3 1658 688 208 140 18 chr5 140703549 140703720 -11833539 + B3A SINE B2 2 193 -5 3 1658 315 362 7 0 chr5 140703786 140703935 -11833324 + (CA)n Simple_repeat Simple_repeat 1 150 0 3 1658 393 39 0 0 chr5 140704675 140704726 -11832533 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1658 1186 54 0 0 chr5 140704804 140704951 -11832308 + B1_Mus2 SINE Alu 1 147 0 3 1658 235 265 110 8 chr5 140704993 140705111 -11832148 + L1MC LINE L1 5722 5851 -1934 3 1658 387 0 0 0 chr5 140705325 140705368 -11831891 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1658 381 296 17 77 chr5 140705385 140705502 -11831757 - B3A SINE B2 -88 110 1 3 1658 774 258 124 27 chr5 140706184 140706443 -11830816 + B4A SINE B4 1 284 -8 3 1658 1381 212 119 39 chr5 140707553 140707941 -11829318 - MTD LTR MaLR 0 419 1 3 1658 664 256 66 6 chr5 140711237 140711418 -11825841 + ID_B1 SINE B4 33 224 0 3 1658 777 181 17 0 chr5 140711433 140711610 -11825649 + GA-rich Low_complexity Low_complexity 1 180 0 3 1658 523 313 33 44 chr5 140712881 140713152 -11824107 + Lx8 LINE L1 7150 7417 -56 3 1658 545 320 104 0 chr5 140713928 140714150 -11823109 + B4 SINE B4 35 279 -13 3 1658 468 0 0 0 chr5 140714190 140714242 -11823017 + (CA)n Simple_repeat Simple_repeat 2 53 0 3 1658 1143 212 110 40 chr5 140717519 140717873 -11819386 + MTEb LTR MaLR 1 379 0 3 1658 240 111 0 0 chr5 140718220 140718256 -11819003 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1658 429 301 177 15 chr5 140718269 140718535 -11818724 - L1MC1 LINE L1 -317 6016 5708 3 1658 501 291 58 62 chr5 140718538 140718813 -11818446 + B4 SINE B4 2 275 -17 3 1658 1553 256 59 22 chr5 140718894 140719388 -11817871 - L1MC1 LINE L1 -629 5715 5205 3 1658 440 209 68 39 chr5 140719386 140719510 -11817749 - L1MC LINE L1 -747 5586 5462 3 1658 222 266 94 0 chr5 140719585 140719649 -11817610 - ID4_ SINE ID -13 70 1 3 1658 1315 181 17 16 chr5 140719623 140719917 -11817342 - ZP3AR Satellite Satellite -91 294 1 3 1658 216 0 0 0 chr5 140719917 140719941 -11817318 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1658 754 246 30 40 chr5 140719941 140719966 -11817293 - ZP3AR Satellite Satellite -177 35 15 3 1658 964 54 0 0 chr5 140719966 140720070 -11817189 - B1_Mm SINE Alu -1 146 18 3 1658 424 275 20 34 chr5 140720071 140720218 -11817041 - B1F SINE Alu -4 145 1 3 1658 785 331 81 14 chr5 140720226 140720761 -11816498 - L1MC1 LINE L1 -944 5202 4617 3 1658 769 289 54 18 chr5 140720762 140721040 -11816219 + B4 SINE B4 1 288 -4 3 1658 224 224 0 0 chr5 140721059 140721108 -11816151 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1658 359 309 71 22 chr5 140721111 140721293 -11815966 - L1MC1 LINE L1 -1523 4623 4433 3 1658 351 0 0 0 chr5 140721468 140721507 -11815752 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1658 635 345 81 35 chr5 140721731 140721958 -11815301 + Lx8 LINE L1 6993 7218 -255 3 1658 979 245 102 48 chr5 140721958 140722292 -11814967 + ORR1E LTR MaLR 5 356 -3 3 1658 635 345 81 35 chr5 140722292 140722412 -11814847 + Lx8 LINE L1 7219 7356 -117 3 1658 24 67 0 0 chr5 140722542 140722587 -11814672 + AT_rich Low_complexity Low_complexity 1 45 0 3 1658 779 207 0 35 chr5 140722691 140722836 -11814423 - B1_Mur1 SINE Alu -8 141 2 3 1658 351 222 0 0 chr5 140722860 140722941 -11814318 + (TA)n Simple_repeat Simple_repeat 2 82 0 3 1658 797 258 147 5 chr5 140725122 140725340 -11811919 + B4A SINE B4 44 292 0 3 1658 480 143 0 0 chr5 140726176 140726260 -11810999 + (TC)n Simple_repeat Simple_repeat 1 84 0 3 1658 1281 34 0 0 chr5 140727227 140727374 -11809885 + B1_Mus2 SINE Alu 1 147 0 3 1658 1019 142 0 0 chr5 140728592 140728733 -11808526 + B1_Mur4 SINE Alu 1 141 -9 3 1658 404 295 61 65 chr5 140728898 140729159 -11808100 + RMER15 LTR ERVL 299 558 -17 3 1658 282 329 0 0 chr5 140731228 140731313 -11805946 - MIR SINE MIR -149 113 29 3 1658 339 180 0 16 chr5 140733210 140733272 -11803987 + HAL1-3A_ME LINE L1 1963 2023 -835 3 1658 180 0 0 0 chr5 140733274 140733294 -11803965 + (CAGT)n Simple_repeat Simple_repeat 2 21 0 3 1658 282 95 0 0 chr5 140735764 140735806 -11801453 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 1658 357 299 115 57 chr5 140736081 140736290 -11800969 + MER21B LTR ERV1 17 237 -626 3 1658 570 221 83 15 chr5 140737822 140737955 -11799304 + RSINE1 SINE B4 18 159 -6 3 1658 689 296 85 0 chr5 140737996 140738185 -11799074 + B4 SINE B4 84 288 -4 3 1658 195 220 45 106 chr5 140738620 140738686 -11798573 + L2b LINE L2 3268 3329 -46 3 1658 252 280 107 0 chr5 140739023 140739098 -11798161 + ID4_ SINE ID 1 83 0 3 1658 1400 86 37 0 chr5 140741776 140741963 -11795296 + B2_Mm2 SINE B2 2 195 0 3 1658 180 0 0 0 chr5 140741973 140741993 -11795266 + (A)n Simple_repeat Simple_repeat 1 20 0 3 1658 254 229 16 0 chr5 140742142 140742203 -11795056 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 1658 469 288 178 0 chr5 140742454 140742572 -11794687 - RSINE1 SINE B4 -19 146 8 3 1658 656 171 14 1 chr5 140743006 140743129 -11794130 - B1_Mur1 SINE Alu -15 134 10 3 1658 274 232 105 27 chr5 140743260 140743355 -11793904 + PB1D10 SINE Alu 10 108 -9 3 1658 375 291 43 21 chr5 140743593 140743736 -11793523 + B4A SINE B4 1 144 -148 3 1658 326 273 15 23 chr5 140743788 140743888 -11793371 + PB1D10 SINE Alu 19 120 0 3 1658 210 128 0 0 chr5 140744030 140744069 -11793190 + (T)n Simple_repeat Simple_repeat 1 39 0 3 1658 1673 36 0 0 chr5 140745098 140745291 -11791968 - B2_Mm1a SINE B2 0 193 1 3 1658 309 330 21 58 chr5 140745571 140745717 -11791542 + MIR3 SINE MIR 22 159 -109 3 1658 1143 143 105 29 chr5 140745996 140746205 -11791054 + URR1A DNA MER1_type 1 225 -1 3 1658 228 312 24 24 chr5 140746207 140746289 -11790970 - B4 SINE B4 -209 83 2 3 1658 769 269 0 47 chr5 140746332 140746523 -11790736 - B3A SINE B2 -16 182 1 3 1658 576 143 240 16 chr5 140746546 140746667 -11790592 + B1_Mus1 SINE Alu 1 148 0 3 1658 216 0 0 0 chr5 140746713 140746737 -11790522 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 1658 441 358 29 69 chr5 140747124 140747215 -11790044 + ID SINE ID 3 85 -139 3 1658 451 346 71 0 chr5 140747215 140747342 -11789917 + B1F SINE Alu 1 136 -13 3 1658 422 287 159 0 chr5 140747501 140747658 -11789601 + B4A SINE B4 28 209 -83 3 1658 1556 229 80 23 chr5 140747667 140748055 -11789204 + MTD LTR MaLR 10 419 0 3 1658 873 260 60 143 chr5 140748779 140749192 -11788067 - MTE2a LTR MaLR 0 379 1 3 1658 318 365 75 6 chr5 140749959 140750119 -11787140 - HAL1 LINE L1 -2193 314 144 3 1658 219 232 0 18 chr5 140750179 140750236 -11787023 + (CAGA)n Simple_repeat Simple_repeat 1 56 0 3 1658 1103 177 81 0 chr5 140750246 140750444 -11786815 + B3 SINE B2 1 214 -2 3 1658 482 325 66 30 chr5 140750475 140750672 -11786587 + B4 SINE B4 81 284 -8 3 1658 954 136 202 6 chr5 140751663 140751841 -11785418 + B3 SINE B2 3 215 -1 3 1658 241 271 179 73 chr5 140751924 140752075 -11785184 + B4 SINE B4 111 277 -15 3 1658 237 314 45 69 chr5 140752227 140752473 -11784786 + L1ME2 LINE L1 5403 5642 -537 3 1658 339 337 71 34 chr5 140752772 140753039 -11784220 + L1ME2 LINE L1 5880 6156 -8 3 1658 520 338 41 7 chr5 140753196 140753342 -11783917 + RSINE1 SINE B4 8 158 -7 3 1658 360 0 0 0 chr5 140753342 140753382 -11783877 + (TGGA)n Simple_repeat Simple_repeat 4 43 0 3 1658 246 295 170 96 chr5 140753420 140753555 -11783704 + B4A SINE B4 3 147 -145 3 1658 443 74 49 0 chr5 140753658 140753739 -11783520 + (CA)n Simple_repeat Simple_repeat 1 85 0 3 1658 267 300 14 0 chr5 140754297 140754367 -11782892 + ID4 SINE ID 6 76 -7 3 1658 646 168 50 7 chr5 140754416 140754560 -11782699 - B3 SINE B2 0 193 34 3 1658 594 227 107 58 chr5 140754613 140754819 -11782440 + ID_B1 SINE B4 2 217 -7 3 1658 541 282 14 92 chr5 140754836 140755043 -11782216 + B3A SINE B2 8 198 0 3 1658 688 189 7 29 chr5 140755444 140755580 -11781679 - RSINE1 SINE B4 -20 145 13 3 1658 273 289 108 0 chr5 140755622 140755705 -11781554 + MTEa LTR MaLR 93 184 -195 3 1658 198 0 0 0 chr5 140755719 140755741 -11781518 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 3 1658 21 0 0 0 chr5 140756610 140756631 -11780628 + AT_rich Low_complexity Low_complexity 1 21 0 3 1658 424 198 12 0 chr5 140757474 140757555 -11779704 - ID4_ SINE ID -1 82 1 3 1658 938 149 37 0 chr5 140757498 140757659 -11779600 - ZP3AR Satellite Satellite -2 210 44 3 1658 763 265 112 0 chr5 140759464 140759660 -11777599 + ID_B1 SINE B4 6 223 -1 3 1658 402 325 11 84 chr5 140759661 140759839 -11777420 + RSINE1 SINE B4 1 165 0 3 1658 556 259 141 11 chr5 140761648 140761686 -11775573 + B4A SINE B4 15 54 -238 3 1658 635 216 50 14 chr5 140761686 140761827 -11775432 + B1_Mur2 SINE Alu 3 148 -1 3 1658 556 259 141 11 chr5 140761827 140761979 -11775280 + B4A SINE B4 55 230 -62 3 1658 2035 280 188 8 chr5 140761979 140762883 -11774376 + Lx8 LINE L1 6407 7473 0 4 1658 369 254 0 0 chr5 140762890 140762961 -11774298 + B4A SINE B4 216 286 -6 3 1658 351 0 0 0 chr5 140764318 140764357 -11772902 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1658 736 267 60 60 chr5 140764958 140764998 -11772261 + ID SINE ID 9 39 -185 4 1658 1853 186 98 13 chr5 140764998 140765384 -11771875 - MTD LTR MaLR 0 419 1 4 1658 736 267 60 60 chr5 140765384 140765558 -11771701 + ID_B1 SINE B4 40 223 -1 4 1658 709 269 112 8 chr5 140765580 140765820 -11771439 + MER21B LTR ERV1 494 758 -105 4 1658 251 350 119 0 chr5 140765936 140766222 -11771037 - L1M4 LINE L1 -1648 4498 4179 4 1658 344 271 46 74 chr5 140766278 140766489 -11770770 - B4A SINE B4 -8 284 20 4 1658 1284 222 146 12 chr5 140767663 140767991 -11769268 + MTEa LTR MaLR 1 372 -7 4 1658 282 322 0 11 chr5 140768428 140768522 -11768737 + (TG)n Simple_repeat Simple_repeat 2 94 0 4 1658 315 0 0 0 chr5 140768696 140768731 -11768528 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4 1658 1174 136 11 0 chr5 140768738 140768914 -11768345 + B2_Mm1t SINE B2 2 179 -14 4 1658 341 106 322 26 chr5 140768999 140769114 -11768145 + B2_Mm2 SINE B2 47 195 0 4 1658 228 67 0 0 chr5 140769114 140769144 -11768115 + (GGA)n Simple_repeat Simple_repeat 3 32 0 4 1658 575 243 16 189 chr5 140769166 140769415 -11767844 + B3 SINE B2 1 206 -10 4 1658 564 88 12 0 chr5 140769443 140769523 -11767736 + B2_Mm2 SINE B2 1 81 -114 4 1658 320 328 44 30 chr5 140769514 140769649 -11767610 - RSINE1 SINE B4 -27 138 2 4 1658 297 75 0 0 chr5 140769700 140769740 -11767519 + (T)n Simple_repeat Simple_repeat 1 40 0 4 1658 1179 75 0 0 chr5 140769740 140769887 -11767372 - B1_Mus2 SINE Alu 0 147 1 4 1659 949 139 429 0 chr5 140772313 140772572 -11764687 + RMER1B Other Other 696 1065 -1 4 1659 303 200 33 125 chr5 140772580 140772700 -11764559 + MT2B LTR ERVL 155 263 -338 4 1659 560 206 87 0 chr5 140772603 140772729 -11764530 + B1_Mur1 SINE Alu 13 149 0 4 1659 534 338 93 60 chr5 140772731 140773096 -11764163 - L1MC LINE L1 -930 5216 4840 4 1659 186 71 0 0 chr5 140773098 140773126 -11764133 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 4 1659 467 285 109 0 chr5 140773153 140773290 -11763969 + RSINE1 SINE B4 3 154 -11 4 1659 219 242 0 0 chr5 140773301 140773363 -11763896 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1659 222 150 0 0 chr5 140773403 140773443 -11763816 + (CATA)n Simple_repeat Simple_repeat 4 43 0 4 1659 269 102 41 0 chr5 140773470 140773519 -11763740 + (CATA)n Simple_repeat Simple_repeat 4 54 0 4 1659 201 129 0 0 chr5 140773546 140773577 -11763682 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1659 656 136 28 18 chr5 140774005 140774121 -11763138 + B1_Mus2 SINE Alu 20 136 -13 4 1659 1237 48 0 0 chr5 140774160 140774307 -11762952 + B1_Mm SINE Alu 1 147 0 4 1659 21 0 0 0 chr5 140774307 140774328 -11762931 + AT_rich Low_complexity Low_complexity 1 21 0 4 1659 662 308 61 9 chr5 140774804 140775033 -11762226 + B4 SINE B4 1 241 -51 4 1659 1896 271 44 4 chr5 140775040 140775580 -11761679 + Lx8 LINE L1 6334 6895 -578 4 1659 564 299 29 101 chr5 140776700 140776780 -11760479 + ID SINE ID 1 78 -146 4 1659 414 0 0 0 chr5 140776780 140776826 -11760433 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1659 564 299 29 101 chr5 140776826 140776841 -11760418 + ID_B1 SINE B4 79 221 -3 4 1659 838 167 6 2 chr5 140776841 140776983 -11760276 + B1_Mur2 SINE Alu 1 146 -1 4 1659 459 0 0 0 chr5 140776985 140777036 -11760223 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 4 1659 435 257 64 0 chr5 140777126 140777235 -11760024 + B3A SINE B2 67 182 -16 4 1659 301 196 36 0 chr5 140777272 140777328 -11759931 - L1MEg LINE L1 -4145 1939 1882 4 1659 1164 63 0 7 chr5 140777340 140777483 -11759776 - B1_Mus1 SINE Alu -6 142 1 4 1659 336 102 0 0 chr5 140777488 140777537 -11759722 + (T)n Simple_repeat Simple_repeat 1 49 0 4 1659 626 247 204 0 chr5 140778076 140778238 -11759021 + B3A SINE B2 1 195 -3 4 1659 414 256 22 52 chr5 140780164 140780300 -11756959 + ID_B1 SINE B4 91 222 -2 4 1659 401 283 20 0 chr5 140780322 140780421 -11756838 + PB1D9 SINE Alu 14 114 -6 4 1659 1243 28 0 0 chr5 140780430 140780571 -11756688 + B1_Mus2 SINE Alu 1 141 -6 4 1659 303 28 0 0 chr5 140780576 140780612 -11756647 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 4 1659 615 281 11 45 chr5 140780643 140780822 -11756437 + B3A SINE B2 9 181 -17 4 1659 375 220 0 35 chr5 140780881 140780966 -11756293 + ID_B1 SINE B4 143 224 0 4 1659 185 132 0 26 chr5 140780969 140781008 -11756251 + GA-rich Low_complexity Low_complexity 4 41 0 4 1659 288 0 0 0 chr5 140781139 140781171 -11756088 + (CA)n Simple_repeat Simple_repeat 2 33 0 4 1659 475 260 63 0 chr5 140781239 140781366 -11755893 + B1F SINE Alu 14 148 -1 4 1659 1363 86 43 0 chr5 140781376 140781562 -11755697 + B2_Mm2 SINE B2 2 195 0 4 1659 647 218 207 0 chr5 140781579 140781758 -11755501 + B3 SINE B2 1 216 0 4 1659 333 296 31 0 chr5 140781779 140781877 -11755382 + B4A SINE B4 1 101 -191 4 1659 773 276 27 18 chr5 140781889 140782114 -11755145 + MTD LTR MaLR 39 265 -154 4 1659 239 337 88 10 chr5 140782719 140782821 -11754438 + B4 SINE B4 70 179 -113 4 1659 443 275 0 0 chr5 140782742 140782851 -11754408 + PB1D7 SINE Alu 12 120 0 4 1659 550 153 0 30 chr5 140782969 140783070 -11754189 + B1_Mur3 SINE Alu 1 98 -51 4 1659 482 216 24 213 chr5 140783070 140783143 -11754116 + B4 SINE B4 86 215 -77 4 1659 1268 78 84 0 chr5 140783143 140783322 -11753937 + B2_Mm2 SINE B2 2 195 0 4 1659 482 216 24 213 chr5 140783322 140783398 -11753861 + B4 SINE B4 216 288 -4 4 1659 1459 232 52 3 chr5 140785061 140785402 -11751857 + MTEb LTR MaLR 2 360 -19 4 1659 333 0 0 0 chr5 140785402 140785439 -11751820 + (GGGGA)n Simple_repeat Simple_repeat 4 40 0 4 1659 426 65 0 0 chr5 140785443 140785505 -11751754 + (CAGG)n Simple_repeat Simple_repeat 2 63 0 4 1659 833 224 136 34 chr5 140785793 140786057 -11751202 + B4 SINE B4 2 292 0 4 1659 271 130 304 0 chr5 140786756 140786825 -11750434 + PB1D10 SINE Alu 22 111 -6 4 1659 1238 194 166 12 chr5 140786993 140787312 -11749947 + MTE2b LTR MaLR 12 379 0 4 1659 305 271 119 0 chr5 140787312 140787430 -11749829 + B4A SINE B4 37 168 -124 4 1659 334 141 110 49 chr5 140787383 140787465 -11749794 + PB1D9 SINE Alu 34 120 0 4 1659 835 256 41 10 chr5 140787478 140787675 -11749584 + B4A SINE B4 82 284 -8 4 1659 225 220 0 63 chr5 140788010 140788073 -11749186 - tRNA-Ala-GCA tRNA tRNA -13 62 4 4 1659 253 263 167 0 chr5 140788088 140788172 -11749087 - PB1D10 SINE Alu -5 122 29 4 1659 430 252 0 64 chr5 140788253 140788363 -11748896 - ID_B1 SINE B4 -35 189 87 4 1659 515 217 9 9 chr5 140788385 140788501 -11748758 - PB1D9 SINE Alu 0 120 5 4 1659 915 258 65 32 chr5 140789130 140789407 -11747852 - B4A SINE B4 -5 287 2 4 1659 269 313 30 10 chr5 140789749 140789849 -11747410 + B1F SINE Alu 43 144 -5 4 1659 666 105 0 0 chr5 140789926 140790031 -11747228 + (GGGA)n Simple_repeat Simple_repeat 1 105 0 4 1659 272 172 17 0 chr5 140790175 140790233 -11747026 + B3A SINE B2 1 59 -139 4 1659 276 295 26 0 chr5 140790320 140790398 -11746861 + ID4_ SINE ID 4 83 0 4 1659 559 145 87 43 chr5 140791273 140791388 -11745871 + ID_B1 SINE B4 99 218 -6 4 1659 510 224 35 56 chr5 140791389 140791531 -11745728 + B1_Mur4 SINE Alu 5 143 -7 4 1659 541 256 179 0 chr5 140791538 140791706 -11745553 + B3A SINE B2 1 198 0 4 1659 410 244 190 16 chr5 140792553 140792674 -11744585 - B1_Mur1 SINE Alu 0 149 8 4 1659 230 245 0 0 chr5 140792683 140792736 -11744523 - PB1D10 SINE Alu 0 117 65 4 1659 356 217 97 11 chr5 140792939 140793032 -11744227 + PB1D10 SINE Alu 10 110 -7 4 1659 264 149 64 0 chr5 140793422 140793469 -11743790 + B1_Mur2 SINE Alu 82 131 -18 4 1659 2441 117 45 14 chr5 140793700 140794118 -11743141 - RMER6B LTR ERVK -1 460 30 4 1659 1032 123 12 6 chr5 140794123 140794295 -11742964 + B2_Mm1t SINE B2 20 192 -1 4 1659 294 85 21 0 chr5 140794289 140794336 -11742923 - RMER6B LTR ERVK -413 48 1 4 1659 490 281 0 0 chr5 140794988 140795109 -11742150 + RSINE1 SINE B4 2 122 -43 4 1659 3108 61 10 5 chr5 140795604 140796002 -11741257 - MTB LTR MaLR 0 400 1 4 1659 268 279 165 39 chr5 140796551 140796565 -11740694 + ID_B1 SINE B4 80 221 -2 4 1659 311 290 71 45 chr5 140796565 140796677 -11740582 + PB1 SINE Alu 11 125 -2 4 1659 343 329 87 7 chr5 140796755 140796905 -11740354 + RSINE1 SINE B4 2 163 -2 4 1659 253 212 212 0 chr5 140796940 140797006 -11740253 + ID4_ SINE ID 2 81 -2 4 1659 282 123 0 0 chr5 140797006 140797063 -11740196 + (CA)n Simple_repeat Simple_repeat 2 58 0 4 1659 286 215 125 12 chr5 140797078 140797158 -11740101 + RSINE1 SINE B4 16 104 -61 4 1659 212 236 0 18 chr5 140797199 140797255 -11740004 + C-rich Low_complexity Low_complexity 6 60 0 4 1659 396 137 152 61 chr5 140797746 140797855 -11739404 - PB1D9 SINE Alu -1 119 2 4 1659 501 296 84 71 chr5 140797990 140798250 -11739009 + RMER5 LTR ERV1 65 329 -205 4 1659 549 266 158 0 chr5 140798250 140798427 -11738832 - B3 SINE B2 -10 206 2 4 1659 501 296 84 71 chr5 140798427 140798475 -11738784 + RMER5 LTR ERV1 330 377 -157 4 1659 44 20 0 0 chr5 140798477 140798528 -11738731 + AT_rich Low_complexity Low_complexity 1 51 0 4 1659 1341 89 17 6 chr5 140798528 140798708 -11738551 - B2_Mm2 SINE B2 -13 182 1 4 1659 751 113 86 31 chr5 140798717 140798845 -11738414 - B1_Mur4 SINE Alu -4 146 12 4 1659 682 191 63 6 chr5 140798850 140799008 -11738251 + RMER5 LTR ERV1 328 494 -40 4 1659 839 184 7 7 chr5 140799010 140799158 -11738101 + B1_Mur4 SINE Alu 1 148 -2 5 1659 1109 98 109 0 chr5 140799173 140799347 -11737912 + B2_Mm2 SINE B2 2 194 -1 5 1659 265 278 83 0 chr5 140799404 140799476 -11737783 - PB1D7 SINE Alu -12 108 31 5 1659 631 227 50 0 chr5 140799957 140800098 -11737161 - B1_Mur2 SINE Alu -1 148 1 5 1659 329 225 10 92 chr5 140800013 140800111 -11737148 - MT2B2 LTR ERVL -344 240 151 5 1659 309 304 0 38 chr5 140800156 140800262 -11736997 - PB1D10 SINE Alu 0 117 16 5 1659 301 226 213 11 chr5 140800430 140800524 -11736735 - PB1D9 SINE Alu -7 113 1 5 1659 1155 69 14 0 chr5 140800538 140800683 -11736576 + B1_Mus1 SINE Alu 1 147 -1 5 1659 41 48 0 0 chr5 140800705 140800767 -11736492 + AT_rich Low_complexity Low_complexity 1 62 0 5 1659 850 169 265 0 chr5 140800769 140800935 -11736324 - B3 SINE B2 -6 210 1 5 1659 660 282 70 132 chr5 140800953 140801309 -11735950 + RMER5 LTR ERV1 13 346 -188 5 1659 770 161 45 9 chr5 140801321 140801473 -11735786 + B1_Mur4 SINE Alu 1 149 -1 5 1659 234 272 59 89 chr5 140801531 140801632 -11735627 + RMER5 LTR ERV1 437 534 0 5 1659 181 75 24 24 chr5 140801820 140801861 -11735398 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 5 1659 662 212 23 64 chr5 140802056 140802227 -11735032 - B3 SINE B2 0 216 53 5 1659 438 53 0 0 chr5 140802233 140802290 -11734969 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1659 1377 67 33 0 chr5 140802443 140802623 -11734636 + B2_Mm1a SINE B2 2 187 -6 5 1659 283 261 115 42 chr5 140802904 140803000 -11734259 - PB1D10 SINE Alu -12 105 3 5 1659 650 247 76 0 chr5 140803000 140803080 -11734179 - ID_B1 SINE B4 -130 94 3 5 1659 402 21 0 0 chr5 140803251 140803298 -11733961 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 5 1659 180 0 0 0 chr5 140803299 140803319 -11733940 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 5 1659 583 108 92 67 chr5 140803319 140803438 -11733821 - B1_Mur4 SINE Alu -28 122 1 5 1659 481 262 28 0 chr5 140803503 140803610 -11733649 + PB1D10 SINE Alu 1 110 -7 5 1659 1010 250 79 13 chr5 140803678 140803994 -11733265 - MTC LTR MaLR -44 377 41 5 1659 258 270 0 13 chr5 140804076 140804151 -11733108 - RSINE1 SINE B4 -88 77 4 5 1659 426 280 9 36 chr5 140804868 140804979 -11732280 + PB1D7 SINE Alu 10 120 0 5 1659 332 330 0 18 chr5 140805220 140805331 -11731928 - PB1D10 SINE Alu -8 109 1 5 1659 382 238 105 0 chr5 140805367 140805472 -11731787 - PB1D9 SINE Alu 0 120 5 5 1659 366 239 96 22 chr5 140805478 140805637 -11731622 - B3A SINE B2 -4 212 34 5 1659 285 297 139 0 chr5 140805650 140805751 -11731508 - PB1D10 SINE Alu 0 117 3 5 1659 360 0 0 0 chr5 140805810 140805850 -11731409 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1659 1141 143 26 116 chr5 140805963 140806231 -11731028 - MTC LTR MaLR -8 413 170 5 1659 471 309 7 13 chr5 140806441 140806592 -11730667 - RSINE1 SINE B4 -1 164 15 5 1659 265 167 74 0 chr5 140806707 140806761 -11730498 - ID_B1 SINE B4 -44 180 123 5 1659 209 309 0 14 chr5 140807305 140807374 -11729885 + (TATG)n Simple_repeat Simple_repeat 1 68 0 5 1659 421 272 65 13 chr5 140807448 140807601 -11729658 - B4 SINE B4 -117 175 15 5 1659 763 28 0 9 chr5 140808459 140808569 -11728690 - L1Md_F2 LINE L1 0 6582 6474 5 1659 451 252 19 0 chr5 140808692 140808795 -11728464 + PB1D10 SINE Alu 1 105 -12 5 1659 284 319 26 34 chr5 140808868 140808985 -11728274 + MER2 DNA MER2_type 191 306 -39 5 1659 1144 53 0 0 chr5 140809319 140809469 -11727790 + B2_Mm2 SINE B2 1 150 -45 5 1659 192 77 0 0 chr5 140809472 140809498 -11727761 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 5 1659 807 183 202 17 chr5 140809542 140809720 -11727539 - B3 SINE B2 -2 214 4 5 1659 741 218 126 0 chr5 140809725 140809899 -11727360 - B3 SINE B2 -19 197 2 5 1659 366 82 0 0 chr5 140810034 140810083 -11727176 + ZP3AR Satellite Satellite 47 95 -117 5 1659 426 198 12 12 chr5 140810083 140810160 -11727099 + ID4 SINE ID 1 78 -5 5 1659 240 86 0 0 chr5 140810160 140810195 -11727064 + (CATA)n Simple_repeat Simple_repeat 2 36 0 5 1659 529 224 42 17 chr5 140810639 140810757 -11726502 - B1_Mur1 SINE Alu -28 121 1 5 1659 317 250 0 103 chr5 140810661 140810768 -11726491 - MT2B LTR ERVL -352 249 154 5 1659 824 211 200 0 chr5 140810784 140810964 -11726295 - B3 SINE B2 0 216 1 5 1659 409 298 66 0 chr5 140810969 140811090 -11726169 - B1F1 SINE Alu -17 132 4 5 1659 1512 62 15 15 chr5 140811580 140811775 -11725484 - B2_Mm2 SINE B2 0 195 1 5 1659 507 206 10 10 chr5 140811819 140811922 -11725337 + PB1D9 SINE Alu 13 115 -5 5 1659 887 186 21 0 chr5 140811928 140812073 -11725186 + B1_Mus1 SINE Alu 1 148 0 5 1659 390 129 0 0 chr5 140812077 140812139 -11725120 + (GGA)n Simple_repeat Simple_repeat 3 64 0 5 1659 341 284 68 8 chr5 140812147 140812264 -11724995 + ID_B1 SINE B4 4 127 -97 5 1659 389 244 132 16 chr5 140812300 140812421 -11724838 + B1F SINE Alu 1 135 -14 5 1659 493 320 0 13 chr5 140812477 140812626 -11724633 + B1F1 SINE Alu 2 148 -1 5 1659 468 250 0 36 chr5 140812627 140812739 -11724520 + PB1D7 SINE Alu 4 111 -9 5 1659 626 238 104 21 chr5 140812747 140812940 -11724319 + B3 SINE B2 1 209 -7 5 1659 623 268 54 16 chr5 140812971 140813157 -11724102 + B3A SINE B2 6 198 0 5 1659 461 303 127 0 chr5 140813212 140813377 -11723882 + B3A SINE B2 5 190 -8 5 1659 322 151 0 17 chr5 140813386 140813454 -11723805 + PB1D9 SINE Alu 51 120 0 5 1659 630 263 252 57 chr5 140813819 140814097 -11723162 + ORR1E LTR MaLR 2 333 -46 5 1659 777 202 76 18 chr5 140814843 140815014 -11722245 + B3A SINE B2 2 182 -16 5 1659 393 117 0 0 chr5 140815014 140815074 -11722185 + (TA)n Simple_repeat Simple_repeat 1 60 0 5 1659 534 266 70 13 chr5 140815246 140815402 -11721857 - B3A SINE B2 -31 167 3 5 1659 882 262 69 113 chr5 140815411 140815790 -11721469 + MTE2a LTR MaLR 9 370 -9 5 1659 285 176 275 0 chr5 140815836 140815927 -11721332 - RMER15 LTR ERVL -113 462 347 5 1659 250 184 0 39 chr5 140817771 140817822 -11719437 + 4.5SRNA scRNA scRNA 40 88 -6 5 1659 244 181 147 40 chr5 140817822 140817842 -11719417 + PB1D9 SINE Alu 42 120 0 5 1659 272 284 12 47 chr5 140817845 140817930 -11719329 + ID2 SINE ID 2 83 0 5 1659 608 221 92 20 chr5 140817945 140818097 -11719162 - ID_B1 SINE B4 -46 178 16 5 1659 1267 20 0 7 chr5 140818392 140818540 -11718719 + B1_Mus2 SINE Alu 1 147 0 5 1659 613 283 20 0 chr5 140818567 140818719 -11718540 + ID_B1 SINE B4 2 156 -68 5 1659 1231 41 7 0 chr5 140818720 140818866 -11718393 + B1_Mus1 SINE Alu 2 148 0 5 1659 364 245 122 0 chr5 140818908 140819006 -11718253 + RSINE1 SINE B4 10 119 -46 5 1659 414 151 122 47 chr5 140819203 140819305 -11717954 + PB1D9 SINE Alu 5 111 -9 5 1659 583 229 97 38 chr5 140819304 140819490 -11717769 + B3 SINE B2 20 216 0 5 1659 396 0 0 0 chr5 140819730 140819774 -11717485 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1659 734 204 0 8 chr5 140821024 140821157 -11716102 + RSINE1 SINE B4 9 140 -25 5 1659 270 0 0 0 chr5 140821165 140821195 -11716064 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1659 551 319 31 70 chr5 140823412 140823641 -11713618 + B4A SINE B4 6 225 -67 5 1659 396 171 26 0 chr5 140823691 140823767 -11713492 + PB1D9 SINE Alu 37 114 -6 5 1659 1175 181 5 0 chr5 140823803 140824002 -11713257 + B3 SINE B2 10 209 -7 5 1659 180 0 0 0 chr5 140824153 140824173 -11713086 + (GGAA)n Simple_repeat Simple_repeat 4 23 0 5 1659 429 20 0 0 chr5 140824202 140824252 -11713007 + (CATCC)n Simple_repeat Simple_repeat 5 54 0 5 1659 278 247 0 56 chr5 140824310 140824400 -11712859 + B3A SINE B2 1 85 -113 5 1659 396 188 40 30 chr5 140824329 140824428 -11712831 + B4A SINE B4 16 115 -177 5 1659 372 223 85 0 chr5 140824453 140824547 -11712712 + B4A SINE B4 186 287 -5 5 1659 282 262 24 0 chr5 140824568 140824652 -11712607 + ID_B1 SINE B4 116 201 -23 5 1659 2739 99 5 86 chr5 140824911 140825151 -11712108 - MTA_Mm LTR MaLR 0 396 186 5 1659 1261 48 0 0 chr5 140825151 140825298 -11711961 - B1_Mm SINE Alu 0 147 1 5 1659 2739 99 5 86 chr5 140825298 140825488 -11711771 - MTA_Mm LTR MaLR -211 185 1 5 1659 570 288 6 18 chr5 140825654 140825820 -11711439 + RSINE1 SINE B4 2 165 0 5 1659 192 296 0 36 chr5 140826181 140826237 -11711022 - MIR3 SINE MIR -44 164 111 5 1659 539 295 48 0 chr5 140826368 140826534 -11710725 + B3A SINE B2 1 174 -24 5 1659 417 116 0 0 chr5 140826537 140826606 -11710653 + (CA)n Simple_repeat Simple_repeat 2 70 0 5 1659 1001 79 64 14 chr5 140826621 140826762 -11710497 - B1_Mus1 SINE Alu 0 148 1 5 1659 667 307 52 45 chr5 140826812 140827099 -11710160 + B4 SINE B4 4 292 0 5 1659 280 267 53 0 chr5 140827555 140827630 -11709629 + ID4 SINE ID 3 81 -2 5 1659 1105 219 49 19 chr5 140828519 140828784 -11708475 + MTEb LTR MaLR 91 363 -16 5 1659 485 248 9 0 chr5 140829561 140829670 -11707589 + PB1D10 SINE Alu 1 110 -7 5 1659 488 240 113 33 chr5 140829674 140829825 -11707434 + B4A SINE B4 124 286 -6 5 1659 349 240 0 0 chr5 140829947 140830022 -11707237 + B1F SINE Alu 1 75 -74 6 1659 885 273 82 11 chr5 140830979 140831249 -11706010 + B4A SINE B4 2 290 -2 6 1659 267 252 7 127 chr5 140831761 140831869 -11705390 + B1F SINE Alu 21 120 -29 6 1659 1405 69 17 0 chr5 140832393 140832566 -11704693 - B2_Mm2 SINE B2 -19 176 1 6 1659 501 212 50 50 chr5 140832646 140832765 -11704494 + PB1D9 SINE Alu 2 120 0 6 1659 402 204 305 42 chr5 140832765 140832883 -11704376 + B1_Mur2 SINE Alu 1 149 0 6 1659 1090 224 179 10 chr5 140833383 140833690 -11703569 + MTE2b LTR MaLR 3 361 -18 6 1659 505 64 13 0 chr5 140834186 140834264 -11702995 - ZP3AR Satellite Satellite -90 122 44 6 1659 242 352 38 9 chr5 140834266 140834372 -11702887 - B1F SINE Alu 0 149 41 6 1659 227 313 16 87 chr5 140834372 140834392 -11702867 - ID_B1 SINE B4 0 224 108 6 1659 233 291 18 74 chr5 140834468 140834584 -11702675 - YREP_Mm Unknown Unknown -1518 294 186 6 1659 254 0 83 0 chr5 140834584 140834620 -11702639 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1659 233 291 18 74 chr5 140834620 140834666 -11702593 - YREP_Mm Unknown Unknown -1627 185 142 6 1659 522 306 14 43 chr5 140834737 140834877 -11702382 + B4A SINE B4 3 138 -154 6 1659 560 231 26 0 chr5 140835591 140835708 -11701551 + PB1D9 SINE Alu 1 120 0 6 1659 38 0 0 0 chr5 140835708 140835746 -11701513 + AT_rich Low_complexity Low_complexity 1 38 0 6 1659 383 279 9 43 chr5 140835761 140835877 -11701382 + PB1D10 SINE Alu 1 112 -5 6 1659 188 143 24 0 chr5 140835883 140835925 -11701334 + (CAGG)n Simple_repeat Simple_repeat 1 43 0 6 1659 987 110 35 0 chr5 140836611 140836756 -11700503 + B1_Mur4 SINE Alu 1 150 0 6 1659 805 236 45 15 chr5 140836942 140837144 -11700115 - B3 SINE B2 -7 209 2 6 1659 183 100 0 0 chr5 140837515 140837545 -11699714 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 6 1659 333 258 180 62 chr5 140837608 140837736 -11699523 - B4A SINE B4 -76 216 74 6 1659 269 257 48 103 chr5 140837801 140837927 -11699332 - PB1D9 SINE Alu 0 120 2 6 1659 2835 26 6 0 chr5 140838328 140838668 -11698591 - MTA_Mm LTR MaLR -54 342 1 6 1659 1588 87 164 37 chr5 140838668 140838966 -11698293 - MTA_Mm-int LTR MaLR 0 1098 763 6 1659 640 239 73 58 chr5 140838983 140839174 -11698085 - B3A SINE B2 -4 194 1 6 1659 456 270 18 0 chr5 140839195 140839306 -11697953 - B3 SINE B2 -103 113 1 6 1659 2080 166 13 21 chr5 140839314 140839689 -11697570 - ORR1D1 LTR MaLR 0 374 3 6 1659 433 184 22 54 chr5 140839845 140839937 -11697322 + ID_B1 SINE B4 66 154 -70 6 1659 239 250 29 154 chr5 140839984 140840088 -11697171 + MT2B2 LTR ERVL 161 251 -333 6 1659 498 254 18 0 chr5 140840002 140840112 -11697147 + PB1D10 SINE Alu 6 117 0 6 1659 24 0 0 0 chr5 140840128 140840152 -11697107 + AT_rich Low_complexity Low_complexity 1 24 0 6 1659 244 295 17 80 chr5 140840152 140840264 -11696995 + B1F SINE Alu 17 128 -21 6 1659 452 284 41 28 chr5 140840268 140840413 -11696846 - B1_Mur1 SINE Alu -2 147 1 6 1659 724 124 142 37 chr5 140840713 140840847 -11696412 + B1_Mur4 SINE Alu 2 149 -1 6 1659 1642 42 0 0 chr5 140840854 140841046 -11696213 + B2_Mm1a SINE B2 2 193 0 6 1659 864 110 206 0 chr5 140841049 140841195 -11696064 + B2_Mm2 SINE B2 1 176 -19 6 1659 605 328 60 49 chr5 140841210 140841427 -11695832 + B4 SINE B4 8 231 -61 6 1659 2152 145 65 3 chr5 140841427 140841794 -11695465 + ORR1B1 LTR MaLR 5 394 0 6 1659 605 328 60 49 chr5 140841794 140841842 -11695417 + B4 SINE B4 232 276 -16 6 1659 183 100 0 0 chr5 140841843 140841873 -11695386 + (CA)n Simple_repeat Simple_repeat 2 31 0 6 1659 676 185 246 11 chr5 140841902 140842077 -11695182 + B3 SINE B2 1 216 0 6 1659 306 67 0 0 chr5 140842088 140842133 -11695126 + (CATA)n Simple_repeat Simple_repeat 2 46 0 6 1659 260 248 267 15 chr5 140842139 140842270 -11694989 + RSINE1 SINE B4 2 165 0 6 1659 432 0 0 0 chr5 140842332 140842380 -11694879 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1659 231 184 0 0 chr5 140842542 140842580 -11694679 + PB1D9 SINE Alu 3 40 -80 6 1659 272 236 42 99 chr5 140842678 140842804 -11694455 + PB1D10 SINE Alu 15 139 -9 6 1659 1201 48 7 0 chr5 140843132 140843278 -11693981 + B1_Mus2 SINE Alu 1 147 0 6 1659 362 256 173 60 chr5 140843287 140843420 -11693839 + RSINE1 SINE B4 2 149 -16 6 1659 352 257 25 74 chr5 140843477 140843536 -11693723 + PB1 SINE Alu 7 64 -63 6 1659 655 12 0 0 chr5 140843536 140843618 -11693641 - L1Md_T LINE L1 0 6582 6501 6 1659 352 257 25 74 chr5 140843618 140843680 -11693579 + PB1 SINE Alu 65 122 -5 6 1659 564 53 0 0 chr5 140843694 140843770 -11693489 + (GA)n Simple_repeat Simple_repeat 2 77 0 6 1659 1575 72 8 0 chr5 140844178 140844484 -11692775 + ZP3AR Satellite Satellite 1 308 0 6 1659 371 282 0 0 chr5 140844484 140844555 -11692704 + ID4_ SINE ID 3 73 -10 6 1659 636 217 41 14 chr5 140844658 140844803 -11692456 + B1F SINE Alu 1 149 0 6 1659 375 23 0 0 chr5 140844815 140844859 -11692400 + (CA)n Simple_repeat Simple_repeat 1 44 0 6 1659 345 217 12 24 chr5 140845042 140845127 -11692132 + RMER15 LTR ERVL 432 515 -60 6 1659 810 170 37 0 chr5 140845146 140845281 -11691978 + B1_Mur2 SINE Alu 3 142 -7 6 1659 228 370 108 23 chr5 140845500 140845630 -11691629 - MER5A DNA MER1_type -34 155 15 6 1659 457 306 22 0 chr5 140845813 140845947 -11691312 + B1F SINE Alu 1 137 -12 6 1659 455 243 97 56 chr5 140846245 140846389 -11690870 + B3 SINE B2 56 205 -11 6 1659 283 268 28 0 chr5 140846682 140846753 -11690506 - BC1_Mm scRNA scRNA -64 88 16 6 1659 400 176 24 51 chr5 140846796 140846900 -11690359 + PB1 SINE Alu 21 127 0 6 1659 306 284 0 54 chr5 140847261 140847354 -11689905 + B4A SINE B4 60 147 -145 6 1659 337 140 0 0 chr5 140847302 140847352 -11689907 + B1F1 SINE Alu 11 60 -89 6 1659 268 243 94 158 chr5 140847352 140847386 -11689873 + MT2B2 LTR ERVL 174 249 -335 6 1659 378 235 71 94 chr5 140847386 140847513 -11689746 + B1_Mus1 SINE Alu 2 125 -23 6 1659 625 292 58 29 chr5 140847738 140848013 -11689246 - L1M5 LINE L1 -415 5758 5476 6 1659 338 231 64 0 chr5 140848072 140848150 -11689109 - ID4 SINE ID 0 83 1 6 1659 1547 32 9 3 chr5 140848150 140848361 -11688898 - ZP3AR Satellite Satellite -11 212 1 6 1659 784 229 18 18 chr5 140848412 140848581 -11688678 + B2_Mm2 SINE B2 1 169 -26 6 1659 435 116 14 14 chr5 140849029 140849099 -11688160 + ID4_ SINE ID 3 72 -11 6 1659 408 316 57 45 chr5 140849456 140849632 -11687627 + B4A SINE B4 2 179 -113 6 1659 377 291 19 10 chr5 140849684 140849788 -11687471 + B4 SINE B4 4 108 -184 6 1659 829 219 61 10 chr5 140849987 140850185 -11687074 - B3 SINE B2 -6 210 3 6 1659 360 0 0 0 chr5 140850191 140850231 -11687028 + (TG)n Simple_repeat Simple_repeat 2 41 0 6 1659 204 339 0 0 chr5 140850240 140850296 -11686963 + L2a LINE L2 3371 3426 0 6 1659 706 238 43 27 chr5 140850843 140851029 -11686230 - ID_B1 SINE B4 -35 189 1 6 1659 1359 232 27 31 chr5 140851209 140851502 -11685757 + B4A SINE B4 1 292 0 6 1659 201 74 0 0 chr5 140851504 140851531 -11685728 + (GGGGA)n Simple_repeat Simple_repeat 4 30 0 6 1659 852 114 57 0 chr5 140851547 140851670 -11685589 + B1_Mus1 SINE Alu 19 148 0 6 1659 383 308 131 0 chr5 140851686 140851816 -11685443 + B1F SINE Alu 1 147 -2 6 1659 218 211 211 0 chr5 140851856 140851927 -11685332 + B3 SINE B2 1 86 -130 6 1659 360 0 0 0 chr5 140851942 140851982 -11685277 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1659 448 153 83 0 chr5 140851992 140852064 -11685195 - B1_Mus1 SINE Alu -41 107 30 6 1659 888 162 75 38 chr5 140852116 140852302 -11684957 + B2_Mm2 SINE B2 3 195 0 6 1659 380 71 18 0 chr5 140852302 140852358 -11684901 + (GAAA)n Simple_repeat Simple_repeat 3 59 0 6 1659 313 173 0 186 chr5 140852359 140852579 -11684680 + RMER17C LTR ERVK 96 274 -136 6 1659 214 51 50 25 chr5 140852584 140852624 -11684635 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 6 1659 277 143 0 0 chr5 140852637 140852679 -11684580 + B1_Mus2 SINE Alu 100 141 -6 6 1659 225 0 0 0 chr5 140852681 140852706 -11684553 + (TAA)n Simple_repeat Simple_repeat 3 27 0 6 1659 380 311 0 28 chr5 140852740 140852849 -11684410 + PB1D10 SINE Alu 12 117 0 6 1659 447 222 18 9 chr5 140853012 140853121 -11684138 + B1_Mur1 SINE Alu 35 144 -5 6 1659 396 0 0 0 chr5 140853296 140853340 -11683919 + (TCC)n Simple_repeat Simple_repeat 2 45 0 6 1659 482 75 398 19 chr5 140853364 140853376 -11683883 - B2_Mm2 SINE B2 0 195 184 6 1659 840 70 10 276 chr5 140853376 140853575 -11683684 - B1_Mus2 SINE Alu 0 147 2 6 1659 482 75 398 19 chr5 140853575 140853670 -11683589 - B2_Mm2 SINE B2 -12 183 47 6 1659 1403 57 23 0 chr5 140853698 140853874 -11683385 - B2_Mm2 SINE B2 -14 181 2 6 1659 749 212 177 16 chr5 140853972 140854164 -11683095 - ID_B1 SINE B4 0 224 2 6 1659 242 301 41 0 chr5 140854653 140854726 -11682533 + ID4 SINE ID 6 81 -2 6 1659 389 269 133 8 chr5 140854663 140854783 -11682476 + ID_B1 SINE B4 21 155 -69 6 1659 233 183 167 0 chr5 140854756 140854816 -11682443 + PB1D10 SINE Alu 48 117 0 6 1659 1775 10 0 0 chr5 140854833 140855026 -11682233 + B2_Mm1a SINE B2 1 193 0 6 1659 927 199 192 34 chr5 140856098 140856218 -11681041 + ORR1D1 LTR MaLR 1 120 -254 6 1659 180 0 0 0 chr5 140856218 140856238 -11681021 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 7 1659 927 199 192 34 chr5 140856238 140856256 -11681003 + ORR1D1 LTR MaLR 121 146 -228 6 1659 198 0 0 0 chr5 140856256 140856278 -11680981 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1659 927 199 192 34 chr5 140856278 140856320 -11680939 + ORR1D1 LTR MaLR 147 208 -166 6 1659 1541 53 16 0 chr5 140856320 140856509 -11680750 + B2_Mm2 SINE B2 1 192 -3 7 1659 927 199 192 34 chr5 140856509 140856649 -11680610 + ORR1D1 LTR MaLR 209 372 -2 6 1659 394 156 47 0 chr5 140856722 140856786 -11680473 - B1_Mur3 SINE Alu -78 71 5 7 1659 611 285 77 16 chr5 140856916 140857098 -11680161 + ID_B1 SINE B4 32 224 0 7 1659 780 254 83 0 chr5 140857439 140857644 -11679615 + ID_B1 SINE B4 3 224 0 7 1659 924 88 80 0 chr5 140857658 140857795 -11679464 + B1_Mur4 SINE Alu 3 150 0 7 1659 226 50 50 0 chr5 140857798 140857838 -11679421 + (CAAAAA)n Simple_repeat Simple_repeat 6 47 0 7 1659 511 330 62 66 chr5 140857840 140857995 -11679264 + B4A SINE B4 82 233 -59 7 1659 815 210 14 0 chr5 140857995 140858138 -11679121 + B1_Mur1 SINE Alu 5 149 0 7 1659 511 330 62 66 chr5 140858138 140858193 -11679066 + B4A SINE B4 234 290 -2 7 1659 192 77 0 0 chr5 140858345 140858371 -11678888 + (CTGGGG)n Simple_repeat Simple_repeat 1 26 0 7 1659 438 20 0 0 chr5 140858892 140858943 -11678316 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1659 661 290 52 5 chr5 140858946 140859132 -11678127 - ID_B1 SINE B4 -10 214 17 7 1659 530 76 25 0 chr5 140859216 140859295 -11677964 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 7 1659 225 0 0 0 chr5 140860009 140860034 -11677225 + (TC)n Simple_repeat Simple_repeat 1 25 0 7 1659 234 0 0 0 chr5 140860034 140860059 -11677200 + (CA)n Simple_repeat Simple_repeat 1 26 0 7 1659 315 0 0 0 chr5 140860059 140860093 -11677166 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1659 278 239 13 53 chr5 140860202 140860277 -11676982 - ID2 SINE ID -11 72 1 7 1659 624 236 113 16 chr5 140860285 140860324 -11676935 - B3 SINE B2 0 216 169 7 1659 318 50 0 0 chr5 140860324 140860364 -11676895 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1659 624 236 113 16 chr5 140860364 140860518 -11676741 - B3 SINE B2 -48 168 4 7 1659 675 240 65 0 chr5 140860518 140860672 -11676587 - B3 SINE B2 -5 211 48 7 1659 614 182 0 39 chr5 140860732 140860835 -11676424 - PB1D9 SINE Alu -19 101 3 7 1659 1597 37 5 10 chr5 140860858 140861051 -11676208 - B2_Mm1a SINE B2 0 193 2 7 1659 26 0 0 0 chr5 140861051 140861077 -11676182 + AT_rich Low_complexity Low_complexity 1 26 0 7 1659 494 292 53 8 chr5 140861095 140861226 -11676033 - RSINE1 SINE B4 -19 146 10 7 1659 270 273 20 102 chr5 140861221 140861319 -11675940 - PB1D10 SINE Alu -5 112 23 7 1659 433 225 273 48 chr5 140861381 140861568 -11675691 + B4A SINE B4 1 229 -63 7 1659 505 282 5 109 chr5 140861568 140861779 -11675480 + B3A SINE B2 1 189 -9 7 1659 1389 83 0 15 chr5 140861819 140861988 -11675271 + B2_Mm2 SINE B2 2 170 -25 7 1659 808 81 295 0 chr5 140861988 140862137 -11675122 + B2_Mm2 SINE B2 1 193 -2 7 1659 991 119 0 0 chr5 140862137 140862271 -11674988 - B1_Mus1 SINE Alu -13 135 2 7 1659 1389 83 0 15 chr5 140862271 140862296 -11674963 + B2_Mm2 SINE B2 171 193 -2 7 1659 362 304 65 61 chr5 140862595 140862840 -11674419 + MLT1E2 LTR MaLR 20 268 -237 7 1659 445 261 8 80 chr5 140862966 140863091 -11674168 + PB1D10 SINE Alu 1 116 -1 7 1659 448 250 42 0 chr5 140863095 140863191 -11674068 + B1_Mur2 SINE Alu 2 101 -48 7 1659 426 108 0 0 chr5 140863463 140863528 -11673731 + (GGA)n Simple_repeat Simple_repeat 2 66 0 7 1659 365 268 6 73 chr5 140863597 140863774 -11673485 + RSINE1 SINE B4 1 165 0 7 1659 361 308 29 43 chr5 140864195 140864334 -11672925 + B3A SINE B2 19 155 -43 7 1659 405 58 0 0 chr5 140864335 140864387 -11672872 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1659 333 211 0 27 chr5 140865752 140865825 -11671434 - ID4_ SINE ID -11 72 2 7 1659 737 188 71 21 chr5 140865836 140865977 -11671282 - B1_Mur2 SINE Alu -1 148 1 7 1659 348 179 173 31 chr5 140865982 140866109 -11671150 - B1F SINE Alu -3 146 2 7 1659 240 35 0 0 chr5 140866200 140866229 -11671030 + (GGA)n Simple_repeat Simple_repeat 3 31 0 7 1659 1062 144 0 0 chr5 140866229 140866409 -11670850 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1659 187 103 51 0 chr5 140866409 140866448 -11670811 + GA-rich Low_complexity Low_complexity 1 41 0 7 1659 1151 44 15 0 chr5 140866546 140866681 -11670578 + B1_Mm SINE Alu 1 137 -10 7 1659 1991 145 106 9 chr5 140866904 140867252 -11670007 + RLTR14 LTR ERV1 1 382 0 7 1659 1211 55 7 0 chr5 140867276 140867422 -11669837 + B1_Mm SINE Alu 1 147 0 7 1659 426 202 0 25 chr5 140867439 140867520 -11669739 - ID_B1 SINE B4 0 224 146 7 1659 288 70 0 0 chr5 140867522 140867565 -11669694 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1659 254 150 0 0 chr5 140867626 140867666 -11669593 - B4 SINE B4 -119 173 134 7 1659 368 254 110 39 chr5 140867769 140867853 -11669406 - ID_B1 SINE B4 -70 154 74 7 1659 417 20 0 0 chr5 140867853 140867903 -11669356 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 7 1659 368 254 110 39 chr5 140867903 140867945 -11669314 - ID SINE ID -151 73 19 7 1659 300 261 14 0 chr5 140868008 140868077 -11669182 - Lx7 LINE L1 -753 6943 6874 7 1659 698 234 102 20 chr5 140868225 140868421 -11668838 + B3 SINE B2 5 216 0 7 1659 1190 50 0 0 chr5 140868439 140868578 -11668681 + B1_Mus2 SINE Alu 3 141 -6 7 1659 249 57 0 0 chr5 140868580 140868615 -11668644 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 7 1659 971 258 23 18 chr5 140868986 140869207 -11668052 - ID_B1 SINE B4 0 224 3 7 1659 259 324 0 0 chr5 140869394 140869462 -11667797 + ID_B1 SINE B4 140 207 -17 7 1659 559 144 124 0 chr5 140869531 140869628 -11667631 + B1_Mur2 SINE Alu 30 138 -11 7 1659 755 50 10 0 chr5 140869629 140869729 -11667530 + (GAAA)n Simple_repeat Simple_repeat 1 101 0 7 1659 455 231 58 0 chr5 140869736 140869840 -11667419 - MTD LTR MaLR -307 112 3 7 1659 907 149 5 116 chr5 140870006 140870196 -11667063 - URR1A DNA MER1_type 0 226 58 7 1659 1423 86 27 0 chr5 140870263 140870450 -11666809 - B2_Mm2 SINE B2 -1 194 3 7 1659 465 199 82 5 chr5 140870730 140870844 -11666415 - PB1D9 SINE Alu -2 118 1 7 1659 1666 31 5 0 chr5 140870988 140871179 -11666080 + B2_Mm1a SINE B2 2 193 0 7 1659 468 245 0 29 chr5 140871505 140871610 -11665649 - B1F SINE Alu -29 120 19 7 1659 358 36 36 0 chr5 140871675 140871731 -11665528 + (TG)n Simple_repeat Simple_repeat 1 58 0 7 1659 825 172 0 20 chr5 140871976 140872124 -11665135 + B1_Mus1 SINE Alu 1 145 -3 7 1659 1066 211 19 13 chr5 140872380 140872591 -11664668 + ID_B1 SINE B4 1 220 -72 7 1659 506 29 15 0 chr5 140872591 140872659 -11664600 + (CA)n Simple_repeat Simple_repeat 2 70 0 7 1659 504 279 89 63 chr5 140872659 140872718 -11664541 + B4 SINE B4 221 277 -15 7 1659 479 308 8 172 chr5 140872877 140873059 -11664200 + ID_B1 SINE B4 1 154 -70 7 1659 871 172 191 16 chr5 140873059 140873242 -11664017 + B3 SINE B2 2 216 0 7 1659 479 308 8 172 chr5 140873242 140873275 -11663984 + ID_B1 SINE B4 155 176 -48 7 1659 297 75 0 0 chr5 140873275 140873315 -11663944 + (TA)n Simple_repeat Simple_repeat 2 41 0 7 1659 479 308 8 172 chr5 140873315 140873365 -11663894 + ID_B1 SINE B4 177 223 -1 7 1659 1170 112 73 0 chr5 140873456 140873635 -11663624 + B2_Mm1t SINE B2 2 193 0 7 1659 417 202 0 119 chr5 140873640 140873741 -11663518 + B1_Mur2 SINE Alu 5 93 -56 7 1659 23 0 0 0 chr5 140873759 140873782 -11663477 + AT_rich Low_complexity Low_complexity 1 23 0 7 1659 741 214 20 27 chr5 140873791 140873940 -11663319 + B1_Mur3 SINE Alu 1 148 -1 7 1659 279 263 235 22 chr5 140874066 140874202 -11663057 + B4A SINE B4 49 213 -79 7 1659 661 165 18 27 chr5 140874430 140874542 -11662717 + ZP3AR Satellite Satellite 38 148 -64 7 1659 301 148 197 0 chr5 140874542 140874603 -11662656 + ID4 SINE ID 1 73 -10 7 1659 180 0 0 0 chr5 140874696 140874716 -11662543 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 7 1659 3469 40 0 0 chr5 140874716 140875111 -11662148 - MTA_Mm LTR MaLR -1 395 1 7 1659 9833 14 1 0 chr5 140875111 140876208 -11661051 - MTA_Mm-int LTR MaLR 0 1098 1 7 1659 3478 28 5 0 chr5 140876208 140876602 -11660657 - MTA_Mm LTR MaLR 0 396 1 7 1659 798 224 102 5 chr5 140876639 140876836 -11660423 + B3 SINE B2 1 216 0 7 1659 770 169 87 14 chr5 140876856 140876994 -11660265 + B1_Mus1 SINE Alu 1 148 0 7 1659 1343 89 26 0 chr5 140876999 140877189 -11660070 + B2_Mm2 SINE B2 1 195 0 7 1659 888 94 158 0 chr5 140877190 140877317 -11659942 + B1_Mm SINE Alu 1 147 0 7 1659 357 186 0 0 chr5 140877317 140877387 -11659872 + A-rich Low_complexity Low_complexity 1 70 0 7 1659 705 168 189 26 chr5 140877387 140877540 -11659719 + MTC LTR MaLR 68 245 -176 7 1659 296 235 272 9 chr5 140877623 140877748 -11659511 - RMER13A LTR ERVK -531 377 183 7 1659 360 300 193 36 chr5 140877773 140878014 -11659245 - HAL1 LINE L1 -1303 1204 915 7 1659 1238 41 0 7 chr5 140878014 140878160 -11659099 - B1_Mm SINE Alu -2 145 1 7 1659 360 300 193 36 chr5 140878160 140878198 -11659061 - HAL1 LINE L1 -1593 914 882 7 1659 339 192 178 75 chr5 140878240 140878347 -11658912 - B3A SINE B2 -79 119 2 7 1659 1371 211 171 0 chr5 140878380 140878726 -11658533 - MTD LTR MaLR -14 405 1 7 1659 859 116 0 58 chr5 140879567 140879704 -11657555 + B3 SINE B2 2 130 -86 7 1659 322 267 26 13 chr5 140879714 140879727 -11657532 + B4A SINE B4 74 87 -205 7 1659 604 169 141 37 chr5 140879727 140879862 -11657397 + B1_Mur4 SINE Alu 2 150 0 7 1659 407 219 35 71 chr5 140879890 140880003 -11657256 + RMER15 LTR ERVL 22 130 -445 7 1659 422 181 16 173 chr5 140880023 140880150 -11657109 + RMER15 LTR ERVL 282 388 -187 7 1659 207 0 0 0 chr5 140880267 140880290 -11656969 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 7 1659 1005 211 19 9 chr5 140880449 140880659 -11656600 - B3 SINE B2 0 216 5 7 1659 4083 163 107 68 chr5 140880659 140881510 -11655749 + RMER19B LTR ERVK 1 884 -18 7 1659 1677 26 0 0 chr5 140881510 140881700 -11655559 + B2_Mm1a SINE B2 1 190 -3 7 1659 1093 58 14 7 chr5 140881702 140881841 -11655418 + B1_Mus2 SINE Alu 2 141 -6 8 1659 2667 106 5 11 chr5 140881981 140882363 -11654896 + RLTR14 LTR ERV1 3 382 0 8 1659 707 247 39 13 chr5 140882364 140882520 -11654739 - ID_B1 SINE B4 -64 160 1 8 1659 873 263 28 14 chr5 140883247 140883459 -11653800 + B3 SINE B2 2 216 0 8 1659 336 164 32 16 chr5 140883461 140883523 -11653736 - ORR1D2 LTR MaLR -307 63 1 8 1659 451 289 32 32 chr5 140883523 140883671 -11653588 - MTE2a LTR MaLR -47 332 185 8 1659 387 294 88 38 chr5 140884358 140884517 -11652742 - MTD LTR MaLR -158 261 95 8 1659 320 229 0 14 chr5 140884539 140884610 -11652649 - ZP3AR Satellite Satellite -95 117 48 8 1659 661 211 153 48 chr5 140884864 140885032 -11652227 + B3 SINE B2 4 196 -20 8 1659 315 49 0 0 chr5 140885032 140885073 -11652186 + (TC)n Simple_repeat Simple_repeat 1 41 0 8 1659 261 0 0 0 chr5 140885073 140885101 -11652158 + (CA)n Simple_repeat Simple_repeat 1 29 0 8 1659 661 211 153 48 chr5 140885101 140885120 -11652139 + B3 SINE B2 197 211 -5 8 1659 429 18 0 35 chr5 140885200 140885258 -11652001 - B1_Mm SINE Alu 0 147 92 8 1659 324 0 0 0 chr5 140885258 140885294 -11651965 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 8 1659 1084 67 0 15 chr5 140885294 140885430 -11651829 - B1_Mus1 SINE Alu -13 135 2 8 1659 261 83 0 0 chr5 140885444 140885480 -11651779 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 8 1659 883 81 161 0 chr5 140885480 140885604 -11651655 - B1_Mus1 SINE Alu -4 144 1 8 1659 723 234 90 29 chr5 140885613 140885817 -11651442 - B3 SINE B2 -3 192 1 8 1659 678 283 0 0 chr5 140885866 140886011 -11651248 - RSINE1 SINE B4 -14 151 7 8 1659 2291 123 3 0 chr5 140886132 140886458 -11650801 + ORR1A2 LTR MaLR 1 327 0 8 1659 406 212 195 0 chr5 140886557 140886670 -11650589 - B4A SINE B4 -8 284 150 8 1659 1302 118 16 0 chr5 140886750 140886937 -11650322 - B2_Mm2 SINE B2 -5 190 1 8 1659 627 168 53 0 chr5 140886956 140887069 -11650190 - PB1D9 SINE Alu -1 119 1 8 1659 573 216 17 75 chr5 140887085 140887205 -11650054 - B1_Mur2 SINE Alu -35 114 2 8 1659 535 278 30 122 chr5 140887205 140887276 -11649983 - B4 SINE B4 -87 193 27 8 1659 1081 44 66 0 chr5 140887283 140887420 -11649839 - B1_Mm SINE Alu 0 147 2 8 1659 227 200 67 0 chr5 140887591 140887636 -11649623 - PB1D7 SINE Alu -2 118 71 8 1659 752 281 12 0 chr5 140887597 140887768 -11649491 - ID_B1 SINE B4 -8 216 44 8 1659 788 164 14 21 chr5 140887888 140888031 -11649228 - B1_Mur1 SINE Alu -1 148 7 8 1659 356 294 107 99 chr5 140887918 140888160 -11649099 - MT2B LTR ERVL -332 269 26 8 1659 581 185 12 126 chr5 140888031 140888055 -11649204 - ID_B1 SINE B4 0 224 77 8 1659 421 149 21 52 chr5 140888212 140888343 -11648916 + B1_Mur4 SINE Alu 22 150 0 8 1659 519 145 12 0 chr5 140888574 140888657 -11648602 + B2_Mm2 SINE B2 35 118 -77 8 1659 3248 112 38 63 chr5 140888657 140889256 -11648003 - RLTR6_Mm LTR ERV1 -70 584 1 8 1659 21 0 0 0 chr5 140889317 140889338 -11647921 + AT_rich Low_complexity Low_complexity 1 21 0 8 1659 589 323 47 5 chr5 140889348 140889538 -11647721 + B3A SINE B2 1 198 0 8 1659 930 189 11 16 chr5 140889609 140889792 -11647467 + B3A SINE B2 1 182 -16 8 1659 610 305 35 59 chr5 140889833 140890011 -11647248 + B3A SINE B2 2 177 -21 8 1659 818 137 0 76 chr5 140890011 140890169 -11647090 - B1_Mur3 SINE Alu -2 147 2 8 1659 610 305 35 59 chr5 140890169 140890192 -11647067 + B3A SINE B2 178 198 0 8 1659 447 168 486 7 chr5 140890203 140890349 -11646910 - B3 SINE B2 0 216 1 8 1659 315 122 0 0 chr5 140890816 140890865 -11646394 + (TG)n Simple_repeat Simple_repeat 1 49 0 8 1659 396 248 0 140 chr5 140890962 140891010 -11646249 + ID_B1 SINE B4 108 151 -73 8 1659 1298 64 36 26 chr5 140891010 140891202 -11646057 + B2_Mm2 SINE B2 2 195 0 8 1659 396 248 0 140 chr5 140891202 140891289 -11645970 + ID_B1 SINE B4 152 224 0 8 1659 321 312 207 24 chr5 140891338 140891584 -11645675 + B4 SINE B4 2 292 0 8 1659 536 197 109 2 chr5 140891718 140891829 -11645430 + B1_Mur4 SINE Alu 2 121 -29 8 1659 203 0 0 36 chr5 140891829 140891857 -11645402 + (CAACC)n Simple_repeat Simple_repeat 5 31 0 8 1659 355 329 53 6 chr5 140891925 140892096 -11645163 - B3A SINE B2 -9 189 11 8 1659 815 72 0 0 chr5 140892289 140892400 -11644859 - B2_Mm2 SINE B2 -82 113 3 8 1659 365 267 86 0 chr5 140892664 140892780 -11644479 + RMER30 DNA MER1_type 38 163 -39 8 1659 625 159 111 0 chr5 140892869 140892995 -11644264 + B1_Mur4 SINE Alu 1 140 -10 8 1659 912 67 97 0 chr5 140893321 140893455 -11643804 + B1_Mus2 SINE Alu 1 147 0 8 1659 295 254 15 0 chr5 140893521 140893588 -11643671 - RSINE1 SINE B4 -63 102 35 8 1659 1288 64 6 17 chr5 140893640 140893801 -11643458 + B2_Mm1a SINE B2 1 162 -31 8 1659 189 0 0 0 chr5 140893801 140893822 -11643437 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 8 1659 1288 64 6 17 chr5 140893822 140893836 -11643423 + B2_Mm1a SINE B2 163 174 -19 8 1659 279 250 125 0 chr5 140893886 140893974 -11643285 - PB1D10 SINE Alu -8 109 11 8 1659 762 213 86 16 chr5 140894098 140894284 -11642975 + B3 SINE B2 15 213 -3 8 1659 236 295 0 16 chr5 140894281 140894343 -11642916 - B3 SINE B2 -106 110 50 8 1659 340 203 19 36 chr5 140896299 140896413 -11640846 - PB1D10 SINE Alu 0 117 10 8 1659 512 278 39 4 chr5 140896551 140896706 -11640553 - ID_B1 SINE B4 0 224 69 8 1659 210 290 151 0 chr5 140897215 140897308 -11639951 - B3 SINE B2 -58 158 52 8 1659 291 310 11 0 chr5 140897726 140897813 -11639446 + ID_B1 SINE B4 135 222 -2 8 1659 510 158 105 0 chr5 140897819 140897914 -11639345 + B3 SINE B2 1 105 -111 8 1659 1246 201 76 0 chr5 140898361 140898624 -11638635 - MTD LTR MaLR -135 284 2 8 1659 215 228 53 0 chr5 140898648 140898705 -11638554 - ID4 SINE ID -22 61 2 8 1659 469 226 19 10 chr5 140898785 140898888 -11638371 - RSINE1 SINE B4 -59 106 3 8 1659 729 243 110 11 chr5 140898958 140899149 -11638110 - B3 SINE B2 -5 211 2 8 1659 851 197 90 10 chr5 140899158 140899358 -11637901 - B3 SINE B2 0 216 1 8 1659 378 264 120 0 chr5 140899370 140899495 -11637764 - B1_Mus2 SINE Alu 0 147 8 8 1659 351 285 100 21 chr5 140899495 140899510 -11637749 - ID_B1 SINE B4 0 224 74 8 1659 393 274 158 6 chr5 140899619 140899784 -11637475 - B4A SINE B4 -4 288 99 8 1659 553 126 18 88 chr5 140899685 140899798 -11637461 - B1_Mus1 SINE Alu -43 105 1 8 1659 637 183 109 5 chr5 140899821 140899983 -11637276 - B3 SINE B2 -9 184 1 8 1659 460 310 0 0 chr5 140899983 140900086 -11637173 - B4A SINE B4 -76 216 114 8 1659 639 165 74 8 chr5 140900105 140900227 -11637032 - B1_Mur3 SINE Alu -7 142 13 8 1659 311 200 0 111 chr5 140900352 140900442 -11636817 - B3A SINE B2 -78 120 41 8 1659 458 192 57 19 chr5 140900448 140900554 -11636705 - PB1D9 SINE Alu -1 119 10 8 1659 387 231 0 0 chr5 140900600 140900678 -11636581 - ID_B1 SINE B4 -62 162 85 8 1659 234 277 20 50 chr5 140900622 140900721 -11636538 + YREP_Mm Unknown Unknown 258 353 -1459 8 1659 227 227 0 0 chr5 140900883 140900927 -11636332 - RSINE1 SINE B4 -36 129 86 8 1660 351 0 0 0 chr5 140903126 140903165 -11634094 + (CA)n Simple_repeat Simple_repeat 1 39 0 8 1660 332 198 113 3 chr5 140903572 140903666 -11633593 + B1F SINE Alu 50 145 -4 8 1660 183 156 0 0 chr5 140903811 140903843 -11633416 + (TTA)n Simple_repeat Simple_repeat 2 33 0 8 1660 1080 62 14 0 chr5 140903850 140903995 -11633264 - B1_Mus1 SINE Alu 0 148 2 8 1660 227 176 0 19 chr5 140904617 140904669 -11632590 + ID_B1 SINE B4 174 224 0 8 1660 576 164 314 0 chr5 140904809 140904968 -11632291 + B3 SINE B2 2 210 -6 8 1660 348 254 32 73 chr5 140905129 140905252 -11632007 - PB1D7 SINE Alu 0 120 3 8 1660 490 191 38 9 chr5 140905152 140905258 -11632001 - ID_B1 SINE B4 -38 186 78 8 1660 222 284 40 26 chr5 140906293 140906309 -11630950 - BC1_Mm scRNA scRNA -60 92 16 8 1660 237 203 67 17 chr5 140906309 140906369 -11630890 - tRNA-Ala-GCY_ tRNA tRNA -3 72 10 8 1660 212 279 53 85 chr5 140906369 140906383 -11630876 - B4 SINE B4 -201 87 1 8 1660 25 31 0 0 chr5 140906875 140906907 -11630352 + AT_rich Low_complexity Low_complexity 1 32 0 8 1660 258 288 118 22 chr5 140906999 140907134 -11630125 - MLT1A0 LTR MaLR -4 361 214 8 1660 706 98 36 0 chr5 140907188 140907300 -11629959 + B1_Mur3 SINE Alu 34 149 0 8 1660 547 139 0 11 chr5 140907444 140907531 -11629728 - B1_Mur4 SINE Alu -3 147 62 8 1660 242 299 13 25 chr5 140907525 140907604 -11629655 - ID_B1 SINE B4 -15 209 132 8 1660 216 319 150 33 chr5 140907604 140907645 -11629614 - B1F SINE Alu -15 134 1 8 1660 1448 58 16 0 chr5 140907672 140907862 -11629397 - B2_Mm2 SINE B2 -1 194 2 8 1660 234 304 43 11 chr5 140908304 140908397 -11628862 + PB1 SINE Alu 4 99 -28 8 1660 254 304 10 52 chr5 140909152 140909249 -11628010 - B3A SINE B2 -36 162 70 8 1660 1523 27 27 0 chr5 140909260 140909447 -11627812 - B2_Mm1t SINE B2 0 193 2 8 1660 252 0 0 0 chr5 140909624 140909652 -11627607 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 8 1660 706 141 8 0 chr5 140909657 140909778 -11627481 - B1_Mus2 SINE Alu 0 147 26 9 1660 290 242 48 57 chr5 140909702 140909807 -11627452 - MT2B LTR ERVL -344 257 154 9 1660 1306 84 10 10 chr5 140909820 140910013 -11627246 - B2_Mm1t SINE B2 0 193 1 9 1660 889 281 132 48 chr5 140910020 140910565 -11626694 - RCHARR1 DNA MER1_type -1 973 383 9 1660 634 186 16 31 chr5 140910979 140911107 -11626152 + B1_Mur1 SINE Alu 6 131 -18 9 1660 552 73 0 0 chr5 140911115 140911197 -11626062 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 9 1660 291 54 0 0 chr5 140911191 140911228 -11626031 + (TC)n Simple_repeat Simple_repeat 1 37 0 9 1660 1080 55 152 0 chr5 140911228 140911393 -11625866 - B2_Mm2 SINE B2 0 195 6 9 1660 314 229 167 0 chr5 140911393 140911489 -11625770 - PB1D7 SINE Alu -5 115 4 9 1660 380 317 88 93 chr5 140911736 140911962 -11625297 - L1MB5 LINE L1 -177 5997 5773 9 1660 243 0 0 0 chr5 140912492 140912519 -11624740 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1660 309 297 110 0 chr5 140912529 140912620 -11624639 - B1F2 SINE Alu -47 102 2 9 1660 658 111 27 18 chr5 140912682 140912792 -11624467 - PB1D9 SINE Alu -8 112 2 9 1660 284 241 38 0 chr5 140912959 140913038 -11624221 + B1F2 SINE Alu 7 88 -61 9 1660 23 0 0 0 chr5 140913377 140913400 -11623859 + GC_rich Low_complexity Low_complexity 1 23 0 9 1660 734 83 0 0 chr5 140916573 140916681 -11620578 + B1_Mus1 SINE Alu 34 141 -7 9 1660 260 197 98 73 chr5 140917243 140917325 -11619934 + PB1D10 SINE Alu 21 104 -13 9 1660 232 276 0 0 chr5 140917329 140917387 -11619872 + C-rich Low_complexity Low_complexity 1 58 0 9 1660 474 18 0 0 chr5 140918602 140918657 -11618602 + (CCTG)n Simple_repeat Simple_repeat 4 58 0 9 1660 522 123 110 28 chr5 140920384 140920493 -11616766 - B1_Mus1 SINE Alu 0 148 31 9 1660 301 214 35 35 chr5 140920516 140920603 -11616656 - B1_Mm SINE Alu 0 147 61 9 1660 676 173 40 0 chr5 140920567 140920699 -11616560 + B1_Mus2 SINE Alu 7 143 -4 9 1660 485 247 33 29 chr5 140920728 140920909 -11616350 - B3 SINE B2 -4 194 7 9 1660 345 202 0 0 chr5 140922570 140922582 -11614677 + (TG)n Simple_repeat Simple_repeat 2 13 0 9 1660 492 18 0 0 chr5 140922582 140922639 -11614620 + (GA)n Simple_repeat Simple_repeat 1 57 0 9 1660 345 202 0 0 chr5 140922639 140922740 -11614519 + (TG)n Simple_repeat Simple_repeat 1 101 0 9 1660 253 280 55 18 chr5 140922817 140922926 -11614333 - B1_Mus1 SINE Alu -34 114 2 9 1660 534 234 82 7 chr5 140922926 140922984 -11614275 - B4 SINE B4 -204 88 20 9 1660 513 97 0 66 chr5 140923010 140923132 -11614127 - L1Md_F3 LINE L1 -1 6583 6470 9 1660 440 0 36 0 chr5 140923156 140923211 -11614048 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 9 1660 369 0 0 0 chr5 140923211 140923251 -11614008 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1660 350 217 0 57 chr5 140923257 140923345 -11613914 - B1F SINE Alu -34 115 33 9 1660 570 243 110 28 chr5 140923995 140924177 -11613082 + B3 SINE B2 1 197 -19 9 1660 558 296 91 19 chr5 140924218 140924428 -11612831 + B4A SINE B4 2 226 -66 9 1660 1216 20 0 7 chr5 140924432 140924580 -11612679 + B1_Mus2 SINE Alu 1 147 0 9 1660 312 27 0 0 chr5 140924580 140924617 -11612642 + (A)n Simple_repeat Simple_repeat 1 37 0 9 1660 695 97 61 9 chr5 140924654 140924769 -11612490 + B1_Mus2 SINE Alu 26 146 -1 9 1660 336 265 71 0 chr5 140924909 140925007 -11612252 - PB1D10 SINE Alu -1 116 12 9 1660 237 287 103 0 chr5 140924929 140925016 -11612243 - ID_B1 SINE B4 -47 177 82 9 1660 3692 105 53 3 chr5 140925053 140925638 -11611621 - Lx4A LINE L1 -1 7057 6444 9 1660 1827 129 9 49 chr5 140925638 140925965 -11611294 + Lx4A LINE L1 6124 6437 -621 9 1660 408 209 81 0 chr5 140926322 140926408 -11610851 - B1_Mur2 SINE Alu -56 93 1 9 1660 245 318 0 33 chr5 140926331 140926422 -11610837 - MT2B LTR ERVL -362 239 152 9 1660 1071 22 0 21 chr5 140926630 140926771 -11610488 + B1_Mm SINE Alu 10 147 0 9 1660 207 0 0 0 chr5 140926771 140926794 -11610465 + (A)n Simple_repeat Simple_repeat 1 23 0 9 1660 312 182 159 0 chr5 140926803 140926891 -11610368 + PB1D10 SINE Alu 3 104 -13 9 1660 216 0 0 0 chr5 140926891 140926915 -11610344 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9 1660 766 107 58 0 chr5 140927130 140927251 -11610008 + B1_Mus1 SINE Alu 9 136 -12 9 1660 234 0 0 0 chr5 140927254 140927280 -11609979 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 9 1660 334 104 5 0 chr5 140927693 140927751 -11609508 - B3 SINE B2 -132 61 2 9 1660 485 258 214 0 chr5 140927760 140927938 -11609321 - L1_Mur3 LINE L1 -316 5564 5349 9 1660 921 204 0 12 chr5 140927945 140928114 -11609145 - B3 SINE B2 -18 198 32 9 1660 630 121 40 0 chr5 140928111 140928210 -11609049 + B1_Mus1 SINE Alu 39 141 -7 9 1660 232 291 96 104 chr5 140928113 140928228 -11609031 + B4 SINE B4 125 238 -54 9 1660 820 295 88 19 chr5 140928228 140928660 -11608599 - L1_Mur3 LINE L1 -1121 4759 4298 9 1660 1128 174 27 31 chr5 140928660 140928885 -11608374 - URR1B DNA MER1_type -1 224 1 9 1660 943 142 51 11 chr5 140928907 140929085 -11608174 + B2_Mm2 SINE B2 2 186 -9 9 1660 23 33 0 0 chr5 140929092 140929122 -11608137 + AT_rich Low_complexity Low_complexity 1 30 0 9 1660 1052 78 7 0 chr5 140929175 140929316 -11607943 - B1_Mm SINE Alu -1 146 5 9 1660 1355 75 5 5 chr5 140929559 140929748 -11607511 - B2_Mm2 SINE B2 -6 189 1 9 1660 459 0 0 0 chr5 140929909 140929960 -11607299 + (TTA)n Simple_repeat Simple_repeat 2 52 0 9 1660 270 0 0 0 chr5 140929972 140930002 -11607257 + (TG)n Simple_repeat Simple_repeat 1 30 0 9 1660 1130 207 116 4 chr5 140930079 140930163 -11607096 - ORR1D2 LTR MaLR -1 369 269 9 1660 2274 128 75 22 chr5 140930163 140930563 -11606696 - MTC LTR MaLR 0 421 1 9 1660 1130 214 129 6 chr5 140930563 140930782 -11606477 - ORR1D2 LTR MaLR -102 268 2 9 1660 315 308 19 28 chr5 140930782 140930862 -11606397 - RSINE1 SINE B4 -84 81 3 9 1660 304 151 60 29 chr5 140930877 140931233 -11606026 + (TA)n Simple_repeat Simple_repeat 1 367 0 9 1660 243 343 14 69 chr5 140931287 140931431 -11605828 + RSINE1 SINE B4 2 137 -28 9 1660 716 281 36 5 chr5 140932290 140932512 -11604747 + B4A SINE B4 24 252 -40 9 1660 361 221 19 87 chr5 140932513 140932617 -11604642 + MT2B LTR ERVL 163 259 -342 9 1660 777 154 22 0 chr5 140932524 140932660 -11604599 + B1_Mur1 SINE Alu 11 149 0 9 1660 237 83 0 0 chr5 140933745 140933781 -11603478 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 9 1660 869 169 0 0 chr5 140933787 140933929 -11603330 - B1_Mus2 SINE Alu 0 147 6 9 1660 514 132 110 0 chr5 140933964 140934055 -11603204 - B1_Mus2 SINE Alu 0 147 47 9 1660 247 259 0 33 chr5 140934002 140934062 -11603197 - MT2B LTR ERVL -347 254 197 9 1660 239 282 0 53 chr5 140934003 140934078 -11603181 - RLTR25B LTR ERVK -530 498 428 9 1660 980 268 5 5 chr5 140934092 140934298 -11602961 - B3 SINE B2 -10 206 1 9 1660 290 26 26 0 chr5 140934307 140934346 -11602913 + (TC)n Simple_repeat Simple_repeat 1 40 0 9 1660 267 271 0 41 chr5 140934346 140934419 -11602840 - ID_B1 SINE B4 -1 223 154 9 1660 400 159 14 0 chr5 140934360 140934429 -11602830 - B1F SINE Alu -15 134 65 9 1660 1154 62 0 0 chr5 140934482 140934627 -11602632 - B1_Mus2 SINE Alu -1 146 2 9 1660 351 0 0 0 chr5 140935310 140935349 -11601910 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 9 1660 755 152 45 8 chr5 140935350 140935483 -11601776 - B1_Mur2 SINE Alu -7 142 5 9 1660 1219 27 0 0 chr5 140935774 140935921 -11601338 + B1_Mus2 SINE Alu 1 147 0 9 1660 500 184 23 0 chr5 140935932 140936019 -11601240 + ID_B1 SINE B4 123 211 -13 9 1660 630 171 0 17 chr5 140936472 140936591 -11600668 - B1_Mur2 SINE Alu -1 148 32 9 1660 653 179 0 16 chr5 140936621 140936746 -11600513 - B1_Mur4 SINE Alu 0 150 28 9 1660 1054 229 5 14 chr5 140936969 140937182 -11600077 - ID_B1 SINE B4 -7 217 7 9 1660 270 0 0 0 chr5 140937186 140937216 -11600043 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1660 1235 90 28 0 chr5 140937216 140937393 -11599866 - B2_Mm2 SINE B2 -12 183 2 9 1660 347 159 188 0 chr5 140937405 140937474 -11599785 - ID4 SINE ID -1 82 1 9 1660 455 268 0 26 chr5 140937701 140937816 -11599443 + PB1D10 SINE Alu 6 117 0 9 1660 187 266 86 25 chr5 140938276 140938357 -11598902 + MIR SINE MIR 109 194 -68 9 1660 1030 161 64 25 chr5 140938404 140938563 -11598696 + B3 SINE B2 2 166 -50 9 1660 354 45 0 0 chr5 140938563 140938607 -11598652 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1660 1030 161 64 25 chr5 140938607 140938651 -11598608 + B3 SINE B2 167 212 -4 9 1660 723 175 27 47 chr5 140938657 140938807 -11598452 + B1_Mus2 SINE Alu 1 147 0 9 1660 1418 202 60 30 chr5 140938809 140939242 -11598017 - RLTR1 LTR ERV1 0 624 135 9 1660 758 197 111 25 chr5 140939314 140939512 -11597747 - B3 SINE B2 0 216 2 9 1660 996 9 0 0 chr5 140940031 140940144 -11597115 + (TCTCC)n Simple_repeat Simple_repeat 3 115 0 9 1660 463 190 120 0 chr5 140940165 140940265 -11596994 - B1F2 SINE Alu 0 149 38 9 1660 700 116 154 8 chr5 140940285 140940415 -11596844 - B1_Mur4 SINE Alu 0 150 2 9 1660 583 264 8 0 chr5 140940426 140940555 -11596704 - B1_Mur1 SINE Alu -8 141 12 9 1660 25 0 0 0 chr5 140940559 140940584 -11596675 + AT_rich Low_complexity Low_complexity 1 25 0 9 1660 589 259 41 41 chr5 140940618 140940787 -11596472 - B3 SINE B2 0 216 48 1 1660 397 203 168 8 chr5 140940745 140940864 -11596395 - B4 SINE B4 -153 139 2 1 1660 554 280 16 2 chr5 140940868 140941013 -11596246 - B1F SINE Alu 0 148 4 1 1660 270 235 0 29 chr5 140941242 140941312 -11595947 + BC1_Mm scRNA scRNA 3 70 -82 1 1660 1027 206 9 46 chr5 140941250 140941469 -11595790 + ID_B1 SINE B4 11 221 -3 1 1660 777 182 0 0 chr5 140941481 140941618 -11595641 + B1_Mur3 SINE Alu 13 149 0 1 1660 1545 36 0 10 chr5 140941622 140941816 -11595443 + B2_Mm1a SINE B2 2 193 0 1 1660 1200 54 0 0 chr5 140941831 140941978 -11595281 + B1_Mm SINE Alu 1 147 0 1 1660 440 148 139 0 chr5 140941996 140942097 -11595162 + PB1D10 SINE Alu 3 117 0 1 1660 322 69 0 29 chr5 140942162 140942215 -11595044 + B1_Mus2 SINE Alu 89 138 -9 1 1660 369 0 0 0 chr5 140942215 140942256 -11595003 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1 1660 849 20 0 0 chr5 140942264 140942363 -11594896 + (GGAAA)n Simple_repeat Simple_repeat 3 101 0 1 1660 251 312 63 21 chr5 140943465 140943560 -11593699 + ID_B1 SINE B4 55 153 -71 1 1660 784 291 16 6 chr5 140943590 140943791 -11593468 + ID_B1 SINE B4 1 217 -75 1 1660 180 243 0 0 chr5 140943792 140943829 -11593430 - MIR SINE MIR -204 58 22 1 1660 723 181 7 71 chr5 140943971 140943992 -11593267 - B3 SINE B2 -5 211 193 1 1660 1227 68 85 0 chr5 140943992 140944168 -11593091 - B2_Mm2 SINE B2 -3 192 2 1 1660 723 181 7 71 chr5 140944168 140944301 -11592958 - B3 SINE B2 -24 192 67 1 1660 379 274 34 8 chr5 140945261 140945379 -11591880 - L3 LINE CR1 -106 4383 4263 1 1660 423 276 126 44 chr5 140945729 140945911 -11591348 + B4 SINE B4 41 237 -55 1 1660 407 291 28 127 chr5 140945919 140946017 -11591242 + B4 SINE B4 128 216 -76 1 1660 267 31 0 0 chr5 140946017 140946049 -11591210 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1 1660 535 170 9 36 chr5 140946049 140946060 -11591199 + B1_Mur1 SINE Alu 140 149 0 1 1660 407 291 28 127 chr5 140946060 140946131 -11591128 + B4 SINE B4 217 290 -2 1 1660 25 65 0 0 chr5 140946201 140946247 -11591012 + AT_rich Low_complexity Low_complexity 1 46 0 1 1660 602 149 212 7 chr5 140946266 140946439 -11590820 + B2_Mm2 SINE B2 1 212 -4 1 1660 528 255 114 27 chr5 140946496 140946645 -11590614 - RSINE1 SINE B4 0 165 4 1 1660 709 326 47 15 chr5 140946649 140946988 -11590271 - L1MB3 LINE L1 -33 6150 5801 1 1660 951 215 111 106 chr5 140947098 140947457 -11589802 - MTE2a LTR MaLR 0 379 19 1 1660 273 29 0 0 chr5 140947970 140948004 -11589255 + (TTG)n Simple_repeat Simple_repeat 1 34 0 1 1660 738 198 0 0 chr5 140948004 140948130 -11589129 - B1_Mur1 SINE Alu -13 136 11 1 1660 379 295 44 9 chr5 140948032 140948135 -11589124 - B4 SINE B4 -95 197 91 1 1660 567 0 0 0 chr5 140948135 140948198 -11589061 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1660 1175 70 0 0 chr5 140948232 140948375 -11588884 - B1_Mus1 SINE Alu -5 143 1 1 1660 850 218 56 5 chr5 140948414 140948612 -11588647 - B3 SINE B2 -8 208 1 1 1660 626 257 6 57 chr5 140948620 140948797 -11588462 - B4 SINE B4 -72 220 53 1 1660 204 40 0 0 chr5 140948838 140948863 -11588396 + (TCCC)n Simple_repeat Simple_repeat 3 27 0 1 1660 888 281 54 22 chr5 140948925 140949011 -11588248 + B4A SINE B4 1 95 -197 1 1660 1023 94 7 26 chr5 140949011 140949164 -11588095 + B1_Mur4 SINE Alu 1 150 0 1 1660 888 281 54 22 chr5 140949164 140949354 -11587905 + B4A SINE B4 96 286 -6 1 1660 290 223 31 21 chr5 140949513 140949609 -11587650 + L1M LINE L1 5261 5357 -816 1 1660 342 0 0 0 chr5 140949641 140949679 -11587580 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1660 570 239 17 0 chr5 140949679 140949796 -11587463 - RSINE1 SINE B4 -41 124 6 1 1660 210 241 35 28 chr5 140950069 140950214 -11587045 + (TCCA)n Simple_repeat Simple_repeat 3 148 0 1 1660 1179 105 0 0 chr5 140950244 140950588 -11586671 + (TCCA)n Simple_repeat Simple_repeat 1 344 0 1 1660 343 283 0 19 chr5 140950604 140950712 -11586547 + (TCCA)n Simple_repeat Simple_repeat 3 108 0 1 1660 240 366 40 0 chr5 140951291 140951392 -11585867 - MER94 DNA AcHobo -27 107 3 1 1660 283 253 20 59 chr5 140951434 140951535 -11585724 + CT-rich Low_complexity Low_complexity 1 97 0 1 1660 471 231 18 36 chr5 140951535 140951647 -11585612 - PB1D10 SINE Alu -1 116 7 1 1660 509 196 201 7 chr5 140952127 140952266 -11584993 + ID_B1 SINE B4 2 167 -57 1 1660 1229 61 0 0 chr5 140952851 140952998 -11584261 - B1_Mus2 SINE Alu 0 147 1 1 1660 1045 239 28 5 chr5 140953076 140953290 -11583969 + ID_B1 SINE B4 1 219 -5 1 1660 830 229 29 59 chr5 140953455 140953659 -11583600 - B3A SINE B2 0 198 1 1 1660 358 344 77 6 chr5 140953983 140954164 -11583095 - MER74A LTR ERVL -274 284 91 1 1660 1621 202 26 78 chr5 140954239 140954626 -11582633 - MTE2b LTR MaLR -3 376 10 1 1660 883 265 9 36 chr5 140955056 140955275 -11581984 + B4 SINE B4 3 215 -77 1 1660 479 91 324 9 chr5 140955267 140955378 -11581881 - B2_Mm2 SINE B2 -3 192 47 1 1660 1212 101 0 0 chr5 140955410 140955579 -11581680 - B2_Mm2 SINE B2 -26 169 1 1 1660 382 267 33 0 chr5 140955579 140955663 -11581596 + B4 SINE B4 192 278 -14 1 1660 414 0 0 0 chr5 140955669 140955715 -11581544 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1660 195 114 0 0 chr5 140955925 140955960 -11581299 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1 1660 595 200 18 132 chr5 140956074 140956152 -11581107 - B1_Mur1 SINE Alu 0 149 85 1 1660 1420 89 16 5 chr5 140956152 140956345 -11580914 - B2_Mm2 SINE B2 0 195 1 1 1660 595 200 18 132 chr5 140956345 140956433 -11580826 - B1_Mur1 SINE Alu -65 84 2 1 1660 213 194 0 0 chr5 140956473 140956509 -11580750 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1660 1276 239 7 17 chr5 140956514 140956808 -11580451 - B4A SINE B4 0 292 2 1 1660 320 232 22 34 chr5 140956809 140956898 -11580361 - PB1D10 SINE Alu 0 117 30 1 1660 390 313 96 27 chr5 140956962 140957182 -11580077 - L1MB7 LINE L1 -271 5913 5679 1 1660 480 77 0 0 chr5 140957183 140957248 -11580011 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 1 1660 278 188 0 0 chr5 140957248 140957296 -11579963 + CT-rich Low_complexity Low_complexity 2 49 0 1 1660 753 197 16 0 chr5 140957297 140957424 -11579835 - B1_Mur4 SINE Alu -19 131 3 1 1660 247 250 0 0 chr5 140957574 140957630 -11579629 - ID4 SINE ID -2 81 26 1 1660 263 300 0 0 chr5 140957774 140957834 -11579425 + B1_Mur1 SINE Alu 76 135 -14 1 1660 370 75 0 0 chr5 140957908 140957968 -11579291 + B1_Mur4 SINE Alu 57 149 -1 1 1660 207 194 0 0 chr5 140957968 140958004 -11579255 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 1 1660 1077 243 5 18 chr5 140958009 140958227 -11579032 + ID_B1 SINE B4 2 216 -8 1 1660 351 270 61 35 chr5 140958749 140958864 -11578395 + B4 SINE B4 2 119 -173 1 1660 651 232 7 21 chr5 140958967 140959108 -11578151 + B4A SINE B4 88 226 -66 1 1660 432 55 0 0 chr5 140959184 140959239 -11578020 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1660 402 299 137 11 chr5 140959649 140959920 -11577339 - L1MC1 LINE L1 -16 6317 6013 1 1660 474 215 0 0 chr5 140959948 140960027 -11577232 - ID4_ SINE ID -4 79 1 1 1660 1640 45 2 2 chr5 140960027 140960390 -11576869 - ZP3AR Satellite Satellite -11 362 1 1 1660 357 24 0 0 chr5 140960427 140960469 -11576790 + (TATG)n Simple_repeat Simple_repeat 1 42 0 1 1660 507 256 8 8 chr5 140960469 140960584 -11576675 - B3A SINE B2 -79 119 4 1 1660 281 0 0 71 chr5 140960615 140960657 -11576602 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1 1660 1049 43 0 0 chr5 140960657 140960790 -11576469 - B1_Mus2 SINE Alu -4 143 11 1 1660 405 273 58 90 chr5 140960683 140960872 -11576387 - MT2B LTR ERVL -337 264 82 1 1660 357 62 0 0 chr5 140961131 140961179 -11576080 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1660 211 274 161 0 chr5 140961216 140961278 -11575981 - ID2 SINE ID -9 74 3 1 1660 610 235 62 58 chr5 140961745 140962020 -11575239 - MTE2a LTR MaLR -148 231 1 1 1660 781 186 0 7 chr5 140962191 140962332 -11574927 - B1_Mur2 SINE Alu 0 149 10 1 1660 574 315 68 43 chr5 140962976 140963255 -11574004 + B4 SINE B4 5 290 -2 1 1660 331 308 68 14 chr5 140963430 140963578 -11573681 - HAL1-3A_ME LINE L1 -420 2438 2283 1 1660 487 193 17 34 chr5 140963578 140963755 -11573504 + CT-rich Low_complexity Low_complexity 2 175 0 1 1660 401 247 102 71 chr5 140963858 140964054 -11573205 - MLT1A LTR MaLR 0 374 173 1 1660 1420 17 0 22 chr5 140964089 140964270 -11572989 + (TTTCC)n Simple_repeat Simple_repeat 4 180 0 1 1660 429 20 0 0 chr5 140964270 140964320 -11572939 + (TC)n Simple_repeat Simple_repeat 2 51 0 1 1660 856 144 0 0 chr5 140964324 140964463 -11572796 - B1_Mur4 SINE Alu 0 150 12 1 1660 416 264 28 129 chr5 140964463 140964499 -11572760 - B4 SINE B4 -63 226 70 1 1660 887 216 75 0 chr5 140964510 140964709 -11572550 - ID_B1 SINE B4 -3 221 8 1 1660 352 206 14 0 chr5 140964750 140964823 -11572436 - ZP3AR Satellite Satellite -118 94 21 1 1660 654 349 32 0 chr5 140964873 140965091 -11572168 - MTE2b LTR MaLR -146 233 9 1 1660 223 339 0 0 chr5 140966138 140966200 -11571059 - ID2 SINE ID -3 80 19 1 1660 540 30 0 0 chr5 140966200 140966266 -11570993 + (CCCCAG)n Simple_repeat Simple_repeat 5 70 0 1 1660 956 147 0 0 chr5 140966266 140966423 -11570836 - ZP3AR Satellite Satellite -11 201 45 1 1660 1384 231 11 41 chr5 140966626 140966657 -11570602 - ORR1B1 LTR MaLR -11 356 327 1 1660 456 267 0 10 chr5 140966657 140966759 -11570500 + PB1D10 SINE Alu 2 102 -15 1 1660 1761 158 63 1 chr5 140966759 140967092 -11570167 - ORR1B1 LTR MaLR -45 349 3 1 1660 888 240 85 0 chr5 140967632 140967832 -11569427 + ID_B1 SINE B4 8 224 0 1 1660 781 184 6 87 chr5 140967837 140967998 -11569261 - B1_Mur1 SINE Alu 0 149 2 1 1660 417 86 0 0 chr5 140968025 140968083 -11569176 + (TCC)n Simple_repeat Simple_repeat 3 60 0 1 1660 298 295 10 10 chr5 140968085 140968181 -11569078 - PB1D10 SINE Alu -1 116 21 1 1660 441 132 24 24 chr5 140968472 140968557 -11568702 + PB1D10 SINE Alu 21 105 -12 1 1660 390 289 0 10 chr5 140968574 140968672 -11568587 + PB1D10 SINE Alu 17 113 -4 1 1660 189 0 0 0 chr5 140968720 140968741 -11568518 + (TCCCC)n Simple_repeat Simple_repeat 4 24 0 1 1660 181 312 51 13 chr5 140970039 140970117 -11567142 - L3b LINE CR1 -200 282 202 1 1660 403 103 0 0 chr5 140970427 140970485 -11566774 + (TG)n Simple_repeat Simple_repeat 1 58 0 1 1660 665 199 6 17 chr5 140970485 140970664 -11566595 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 1 1660 463 212 26 7 chr5 140970640 140970792 -11566467 + (TATG)n Simple_repeat Simple_repeat 3 157 0 1 1660 294 29 0 0 chr5 140971525 140971560 -11565699 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1 1660 1007 218 25 0 chr5 140971560 140971762 -11565497 - ID_B1 SINE B4 -12 212 6 1 1660 1027 145 0 0 chr5 140971785 140971930 -11565329 - B1_Mur4 SINE Alu -3 147 3 1 1660 664 211 139 11 chr5 140972033 140972260 -11564999 + MTD LTR MaLR 149 405 -14 1 1660 180 0 0 0 chr5 140972749 140972769 -11564490 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1 1660 980 99 30 0 chr5 140972769 140972900 -11564359 - B1_Mus1 SINE Alu -13 135 1 1 1660 621 296 55 54 chr5 140973013 140973316 -11563943 + B4 SINE B4 7 274 -18 1 1660 595 197 17 0 chr5 140973341 140973458 -11563801 + PB1D9 SINE Alu 2 120 0 1 1660 267 103 0 0 chr5 140973461 140973500 -11563759 + (TAG)n Simple_repeat Simple_repeat 1 39 0 1 1660 453 263 0 83 chr5 140973564 140973674 -11563585 + B2_Mm2 SINE B2 1 103 -92 1 1660 1159 56 0 27 chr5 140973674 140973820 -11563439 - B1_Mus1 SINE Alu -5 143 2 1 1660 453 263 0 83 chr5 140973820 140973854 -11563405 + B2_Mm2 SINE B2 104 133 -62 1 1660 1212 62 0 0 chr5 140973858 140974004 -11563255 - B1_Mus2 SINE Alu 0 147 2 1 1660 3107 121 206 13 chr5 140974005 140974608 -11562651 - RMER19A LTR ERVK -18 719 1 1 1660 239 140 0 20 chr5 140974656 140974707 -11562552 + B3 SINE B2 167 216 0 1 1660 214 182 0 0 chr5 140974708 140974752 -11562507 + A-rich Low_complexity Low_complexity 6 49 0 1 1660 390 236 147 33 chr5 140974758 140974942 -11562317 - MLT1A0 LTR MaLR -77 288 84 1 1660 1892 78 65 3 chr5 140974955 140975264 -11561995 - RLTR11B LTR ERVK -8 445 118 1 1660 1161 86 0 0 chr5 140975274 140975437 -11561822 - B2_Mm2 SINE B2 -31 164 2 1 1660 864 126 0 0 chr5 140975437 140975572 -11561687 - RLTR11B LTR ERVK -318 135 1 1 1660 1040 215 10 0 chr5 140975654 140975854 -11561405 + B3 SINE B2 15 216 0 1 1660 856 247 60 6 chr5 140975874 140976057 -11561202 - B3 SINE B2 -19 197 5 1 1660 813 137 0 0 chr5 140976136 140976260 -11560999 - B1_Mur3 SINE Alu -24 125 2 1 1660 225 252 8 39 chr5 140976152 140976280 -11560979 - ORR1B1-int LTR MaLR -755 754 631 1 1660 242 327 164 10 chr5 140976284 140976596 -11560663 - L1_Rod LINE L1 -439 5408 5049 1 1660 685 215 36 15 chr5 140976617 140976754 -11560505 - B1_Mur4 SINE Alu -3 147 8 1 1660 1505 73 7 0 chr5 140977055 140977557 -11559702 + ZP3AR Satellite Satellite 1 505 -1 1 1660 225 289 84 56 chr5 140977728 140977871 -11559388 + MIRb SINE MIR 29 175 -93 1 1660 486 268 47 0 chr5 140977943 140978070 -11559189 + RSINE1 SINE B4 2 134 -31 1 1660 327 49 0 0 chr5 140978071 140978112 -11559147 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1660 405 0 0 0 chr5 140978278 140978323 -11558936 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1660 407 238 273 32 chr5 140978323 140978639 -11558620 + MTD LTR MaLR 28 419 0 1 1660 495 261 55 117 chr5 140978714 140978826 -11558433 - B4A SINE B4 -51 241 121 1 1660 1406 174 33 72 chr5 140978826 140979161 -11558098 - RLTRETN_Mm LTR ERVK 0 322 1 1 1660 495 261 55 117 chr5 140979161 140979304 -11557955 - B4A SINE B4 -172 120 2 1 1660 276 301 32 52 chr5 140979316 140979470 -11557789 - L1MD LINE L1 -2396 5599 5449 1 1660 604 225 28 21 chr5 140979586 140979727 -11557532 + B1_Mur2 SINE Alu 2 143 -6 1 1660 691 239 59 114 chr5 140979760 140979844 -11557415 - ID_B1 SINE B4 0 224 161 1 1660 1259 41 0 0 chr5 140979844 140979991 -11557268 - B1_Mm SINE Alu 0 147 1 1 1660 691 239 59 114 chr5 140979991 140980142 -11557117 - ID_B1 SINE B4 -64 160 2 1 1660 437 281 125 60 chr5 140980153 140980369 -11556890 + MLT1C LTR MaLR 2 231 -236 1 1660 220 264 19 0 chr5 140980722 140980775 -11556484 - B4 SINE B4 -166 126 73 1 1660 653 266 83 93 chr5 140980774 140981064 -11556195 - B4 SINE B4 0 292 6 1 1660 234 0 0 0 chr5 140981068 140981094 -11556165 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1 1660 257 223 148 8 chr5 140981094 140981216 -11556043 - B1F1 SINE Alu -10 139 1 1 1660 195 235 39 0 chr5 140981220 140981271 -11555988 - MIRb SINE MIR -50 218 166 1 1660 270 247 51 13 chr5 140981773 140981851 -11555408 + MIRb SINE MIR 46 126 -142 1 1660 21 0 0 0 chr5 140982321 140982342 -11554917 + AT_rich Low_complexity Low_complexity 1 21 0 1 1660 598 197 8 16 chr5 140982582 140982706 -11554553 + B1F SINE Alu 25 147 -2 1 1660 477 215 84 0 chr5 140982960 140983067 -11554192 + PB1D10 SINE Alu 2 117 0 1 1660 645 213 312 13 chr5 140983203 140983427 -11553832 - B4 SINE B4 0 292 2 1 1660 468 207 0 0 chr5 140984092 140984208 -11553051 + (CA)n Simple_repeat Simple_repeat 1 116 0 1 1660 628 204 0 0 chr5 140984216 140984324 -11552935 - B1_Mus2 SINE Alu -37 110 3 1 1660 661 248 88 29 chr5 140984336 140984540 -11552719 - ID_B1 SINE B4 -7 217 2 1 1660 253 191 0 0 chr5 140984593 140984640 -11552619 + ID_B1 SINE B4 94 140 -84 1 1660 341 156 0 13 chr5 140984644 140984722 -11552537 + GA-rich Low_complexity Low_complexity 2 78 0 1 1660 715 113 0 9 chr5 140985125 140985241 -11552018 + B1_Mur4 SINE Alu 36 150 0 1 1660 247 136 321 0 chr5 140985286 140985367 -11551892 + PB1D10 SINE Alu 5 111 -6 1 1660 417 220 29 39 chr5 140985470 140985574 -11551685 + ID_B1 SINE B4 122 224 0 1 1660 585 197 183 43 chr5 140985593 140985779 -11551480 + B4A SINE B4 12 223 -69 1 1660 501 337 32 43 chr5 140986150 140986429 -11550830 + HAL1 LINE L1 1935 2210 -297 1 1660 371 147 118 0 chr5 140986547 140986615 -11550644 + PB1D9 SINE Alu 32 107 -13 1 1660 576 301 41 41 chr5 140986905 140986951 -11550308 - B3A SINE B2 -3 195 155 1 1660 429 0 49 0 chr5 140986951 140987012 -11550247 + (TG)n Simple_repeat Simple_repeat 2 65 0 1 1660 576 301 41 41 chr5 140987012 140987127 -11550132 - B3A SINE B2 -44 154 41 1 1660 201 39 0 0 chr5 140987127 140987153 -11550106 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 1 1660 576 301 41 41 chr5 140987153 140987184 -11550075 - B3A SINE B2 -158 40 2 1 1660 614 243 93 49 chr5 140987184 140987397 -11549862 - B4A SINE B4 -60 232 10 1 1660 1541 74 16 0 chr5 140988186 140988582 -11548677 - ZP3AR Satellite Satellite -89 402 1 1 1660 598 218 82 8 chr5 140988582 140988716 -11548543 - B1_Mur1 SINE Alu -5 144 1 1 1660 273 281 0 0 chr5 140988950 140989046 -11548213 + (TG)n Simple_repeat Simple_repeat 1 96 0 1 1660 548 286 27 67 chr5 140989052 140989277 -11547982 - B4 SINE B4 0 292 77 1 1660 346 197 45 0 chr5 140989345 140989411 -11547848 + ZP3AR Satellite Satellite 41 109 -103 1 1660 282 244 115 0 chr5 140989499 140989577 -11547682 - PB1D10 SINE Alu -6 111 25 1 1660 239 345 94 67 chr5 140989745 140989799 -11547460 - B4A SINE B4 -18 274 218 1 1660 1079 179 33 28 chr5 140989799 140990012 -11547247 - B3 SINE B2 0 216 3 1 1660 239 345 94 67 chr5 140990012 140990224 -11547035 - B4A SINE B4 -75 217 1 1 1660 712 186 193 23 chr5 140990382 140990558 -11546701 + B3 SINE B2 5 210 -6 1 1660 301 217 194 11 chr5 140990693 140990786 -11546473 - PB1D10 SINE Alu -7 110 1 1 1660 416 91 0 15 chr5 140991031 140991098 -11546161 + (TCCC)n Simple_repeat Simple_repeat 1 66 0 1 1660 348 240 21 10 chr5 140991302 140991399 -11545860 + PB1D10 SINE Alu 1 98 -19 1 1660 1067 108 13 0 chr5 140991440 140991623 -11545636 + ZP3AR Satellite Satellite 1 185 -1 1 1660 386 207 36 24 chr5 140991990 140992074 -11545185 - B1_Mus2 SINE Alu -58 89 5 1 1660 409 250 8 49 chr5 140992240 140992362 -11544897 - PB1D10 SINE Alu 0 117 1 1 1660 1430 251 94 7 chr5 140992465 140992899 -11544360 + RMER5 LTR ERV1 63 534 0 1 1660 334 215 8 4 chr5 140992913 140992988 -11544271 - MLT2B4 LTR ERVL -325 89 13 1 1660 1514 60 0 0 chr5 140994187 140994484 -11542775 + ZP3AR Satellite Satellite 1 297 0 1 1660 791 209 142 6 chr5 140994660 140994843 -11542416 - B3 SINE B2 -7 209 2 1 1660 1090 29 71 14 chr5 140994866 140995006 -11542253 - B1_Mus1 SINE Alu 0 148 1 1 1660 378 303 114 2 chr5 140995244 140995416 -11541843 - L1MD LINE L1 -2934 3209 3028 1 1660 1246 48 0 0 chr5 140995416 140995562 -11541697 - B1_Mus2 SINE Alu 0 147 2 1 1660 325 340 60 30 chr5 140995562 140995589 -11541670 - L1MD LINE L1 -3116 3027 3004 1 1660 32 26 0 0 chr5 140995602 140995641 -11541618 + AT_rich Low_complexity Low_complexity 1 39 0 1 1660 397 260 125 0 chr5 140995711 140995815 -11541444 - PB1D7 SINE Alu -2 118 2 1 1660 243 342 0 12 chr5 140996135 140996215 -11541044 + RSINE1 SINE B4 85 163 -2 1 1660 278 250 29 0 chr5 140996347 140996415 -11540844 - L1MD LINE L1 -3246 2900 2831 1 1660 240 182 71 18 chr5 140996559 140996615 -11540644 + B3A SINE B2 2 60 -138 1 1660 252 214 54 0 chr5 140996617 140996673 -11540586 + B3A SINE B2 2 60 -138 1 1660 252 214 54 0 chr5 140996675 140996731 -11540528 + B3A SINE B2 2 60 -138 1 1660 577 280 41 26 chr5 140996733 140996927 -11540332 + B3A SINE B2 2 198 0 1 1660 516 301 51 82 chr5 140996937 140997020 -11540239 - L1MD LINE L1 -3586 2560 2494 1 1660 1080 187 79 0 chr5 140997020 140997223 -11540036 - ID_B1 SINE B4 -3 221 3 1 1660 516 301 51 82 chr5 140997223 140997432 -11539827 - L1MD LINE L1 -3653 2493 2277 1 1660 192 40 0 0 chr5 140998228 140998253 -11539006 + (TA)n Simple_repeat Simple_repeat 2 26 0 1 1660 428 55 0 5 chr5 140998259 140998324 -11538935 - B2_Mm2 SINE B2 -107 109 47 1 1660 643 77 11 0 chr5 140998367 140998458 -11538801 - B2_Mm1t SINE B2 -14 179 88 1 1660 840 266 4 34 chr5 140998651 140998885 -11538374 - B4 SINE B4 0 292 66 1 1660 769 187 0 0 chr5 140998904 140999038 -11538221 - B1_Mm SINE Alu -8 139 6 1 1660 778 199 14 7 chr5 140999042 140999189 -11538070 - B1_Mur2 SINE Alu 0 149 2 1 1660 625 294 26 87 chr5 140999189 140999281 -11537978 - B4 SINE B4 -204 88 1 1 1660 35 24 0 0 chr5 141001626 141001668 -11535591 + AT_rich Low_complexity Low_complexity 1 42 0 1 1660 743 203 85 71 chr5 141001668 141001880 -11535379 - B3 SINE B2 -1 215 1 2 1660 313 338 45 8 chr5 141001939 141001956 -11535303 - RSINE1 SINE B4 -25 140 2 3 1660 583 176 19 3 chr5 141001956 141002073 -11535186 - B3A SINE B2 -69 126 1 4 1660 438 280 112 0 chr5 141002228 141002353 -11534906 + B1F1 SINE Alu 3 141 -8 5 1660 708 192 66 7 chr5 141002363 141002515 -11534744 + ZP3AR Satellite Satellite 4 164 -48 6 1660 1202 75 0 0 chr5 141002611 141002758 -11534501 + B1_Mus1 SINE Alu 2 148 0 7 1660 180 0 0 0 chr5 141002758 141002778 -11534481 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1660 612 269 45 0 chr5 141003051 141003207 -11534052 - RSINE1 SINE B4 0 165 3 9 1660 282 300 0 62 chr5 141003208 141003304 -11533955 - MTEb LTR MaLR -56 323 234 1 1660 288 291 54 72 chr5 141003301 141003412 -11533847 - B4A SINE B4 -150 142 34 1 1660 814 295 19 0 chr5 141003891 141004098 -11533161 + ID_B1 SINE B4 9 219 -5 1 1660 3629 170 70 11 chr5 141004149 141004802 -11532457 - RLTR17 LTR ERVK 0 692 1 1 1660 610 315 90 26 chr5 141004839 141005106 -11532153 - B4A SINE B4 -8 284 1 1 1660 2685 125 42 36 chr5 141005773 141006245 -11531014 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1660 24440 8 21 0 chr5 141006245 141009141 -11528118 - IAPEz-int LTR ERVK 0 6481 3525 1 1660 870 96 24 0 chr5 141009141 141009266 -11527993 - IAPEz-int LTR ERVK -2770 4910 4783 1 1660 1711 123 4 4 chr5 141009261 141009523 -11527736 - IAPEz-int LTR ERVK -5183 2497 2236 1 1660 445 66 0 32 chr5 141009512 141009575 -11527684 - IAPEz-int LTR ERVK -5062 1419 1359 1 1660 3304 95 17 42 chr5 141009575 141010389 -11526870 - IAPEz-int LTR ERVK -5819 662 17 1 1660 260 83 0 0 chr5 141010389 141010425 -11526834 - IAPEz-int LTR ERVK -1949 38 3 1 1660 2689 125 42 36 chr5 141010427 141010899 -11526360 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1660 1680 37 0 0 chr5 141011008 141011199 -11526060 + B2_Mm1a SINE B2 2 192 -1 1 1660 629 179 30 9 chr5 141011202 141011335 -11525924 + B1_Mur4 SINE Alu 15 150 0 1 1660 741 144 11 44 chr5 141011344 141011526 -11525733 + GA-rich Low_complexity Low_complexity 4 179 0 1 1660 470 257 9 0 chr5 141011545 141011650 -11525609 + RSINE1 SINE B4 17 122 -43 2 1660 393 70 0 0 chr5 141011654 141011711 -11525548 + (GA)n Simple_repeat Simple_repeat 2 58 0 2 1660 387 148 0 0 chr5 141012904 141012965 -11524294 + RSINE1 SINE B4 1 61 -104 2 1660 441 0 0 0 chr5 141013151 141013200 -11524059 + (TCCC)n Simple_repeat Simple_repeat 2 50 0 2 1660 1502 58 16 5 chr5 141013311 141013502 -11523757 - B2_Mm2 SINE B2 -1 194 2 2 1660 180 0 0 0 chr5 141013671 141013691 -11523568 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2 1660 1163 90 0 0 chr5 141013691 141013836 -11523423 - B1_Mus2 SINE Alu -2 145 1 2 1660 386 228 11 11 chr5 141013839 141013932 -11523327 - B4A SINE B4 -199 93 1 2 1660 455 254 9 0 chr5 141013940 141014050 -11523209 - ID_B1 SINE B4 -3 221 111 2 1660 289 180 0 0 chr5 141014621 141014671 -11522588 - B4A SINE B4 -200 92 43 2 1660 1364 75 11 0 chr5 141014706 141014880 -11522379 + B2_Mm1t SINE B2 4 179 -14 3 1660 303 89 356 20 chr5 141014912 141015013 -11522246 + B2_Mm2 SINE B2 47 181 -14 3 1660 279 0 0 0 chr5 141015379 141015410 -11521849 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 3 1660 257 278 14 27 chr5 141015414 141015488 -11521771 - ID_B1 SINE B4 -19 205 133 3 1660 329 158 20 31 chr5 141015729 141015827 -11521432 + CT-rich Low_complexity Low_complexity 1 97 0 3 1660 263 162 95 48 chr5 141015929 141016013 -11521246 - MIRm SINE MIR -117 159 72 3 1660 1411 74 17 0 chr5 141016578 141016754 -11520505 - B2_Mm2 SINE B2 -16 179 1 3 1660 754 76 0 0 chr5 141016798 141016903 -11520356 + B1_Mus1 SINE Alu 34 138 -10 3 1660 863 50 8 0 chr5 141016903 141017024 -11520235 + (GA)n Simple_repeat Simple_repeat 2 123 0 3 1660 330 277 0 0 chr5 141017080 141017210 -11520049 + C-rich Low_complexity Low_complexity 4 133 0 3 1660 226 210 48 65 chr5 141017270 141017396 -11519863 - MIRc SINE MIR -67 195 81 4 1660 261 254 34 0 chr5 141017439 141017498 -11519761 + RSINE1 SINE B4 83 143 -22 4 1660 204 97 0 0 chr5 141017511 141017542 -11519717 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1660 1028 141 23 29 chr5 141017589 141017764 -11519495 + B2_Mm2 SINE B2 5 178 -17 4 1660 189 107 0 0 chr5 141017766 141017794 -11519465 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 4 1660 3314 53 5 2 chr5 141018374 141018773 -11518486 + MTB LTR MaLR 1 400 0 4 1660 1061 243 9 0 chr5 141019598 141019812 -11517447 + B3 SINE B2 1 216 0 4 1660 555 264 67 99 chr5 141019995 141020277 -11516982 + B4 SINE B4 2 274 -18 4 1660 495 0 0 0 chr5 141020319 141020374 -11516885 + (TC)n Simple_repeat Simple_repeat 1 55 0 4 1660 249 33 0 0 chr5 141020374 141020403 -11516856 + (CA)n Simple_repeat Simple_repeat 1 30 0 4 1660 547 231 8 0 chr5 141020598 141020715 -11516544 - RSINE1 SINE B4 -46 119 2 5 1660 2310 61 109 0 chr5 141021183 141021477 -11515782 - ORR1A2 LTR MaLR 0 327 2 5 1660 1430 75 5 0 chr5 141023101 141023289 -11513970 + B2_Mm1t SINE B2 2 190 -3 5 1660 294 183 108 40 chr5 141023426 141023500 -11513759 - RSINE1 SINE B4 -57 108 30 5 1660 1560 43 16 0 chr5 141023522 141023707 -11513552 + B2_Mm2 SINE B2 1 188 -7 5 1660 1000 149 0 0 chr5 141023709 141023857 -11513402 - B1_Mus1 SINE Alu 0 148 1 5 1660 25 0 0 0 chr5 141023857 141023882 -11513377 + AT_rich Low_complexity Low_complexity 1 25 0 5 1660 1407 112 0 5 chr5 141024016 141024205 -11513054 - B2_Mm2 SINE B2 -7 188 1 5 1660 859 230 1 34 chr5 141024221 141024438 -11512821 - B3A SINE B2 -11 205 3 5 1660 247 340 10 40 chr5 141024478 141024579 -11512680 + PB1D9 SINE Alu 4 101 -19 5 1660 677 73 0 10 chr5 141024579 141024676 -11512583 + (TCCC)n Simple_repeat Simple_repeat 4 99 0 6 1660 317 235 52 112 chr5 141024886 141024955 -11512304 - PB1 SINE Alu 0 127 66 6 1660 704 166 13 58 chr5 141024955 141025109 -11512150 + B1_Mur4 SINE Alu 3 149 -1 6 1660 317 235 52 112 chr5 141025109 141025173 -11512086 - PB1 SINE Alu -62 65 2 6 1660 599 334 42 42 chr5 141025186 141025520 -11511739 - L1M4 LINE L1 -909 5237 4904 6 1660 666 288 79 47 chr5 141025597 141025939 -11511320 - L1MC4 LINE L1 -1562 6480 6128 6 1660 384 256 117 70 chr5 141026087 141026301 -11510958 - ID_B1 SINE B4 0 224 1 6 1660 1187 7 0 0 chr5 141026301 141026453 -11510806 - ZP3AR Satellite Satellite -11 201 50 6 1660 654 153 83 15 chr5 141026738 141026871 -11510388 - B1_Mus2 SINE Alu -1 146 5 6 1660 224 30 30 0 chr5 141026875 141026908 -11510351 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 6 1660 1215 36 0 0 chr5 141026908 141027046 -11510213 - B1_Mus2 SINE Alu -9 138 1 6 1660 522 271 60 0 chr5 141027111 141027262 -11509997 - ID_B1 SINE B4 -31 193 34 7 1660 1620 202 19 25 chr5 141027291 141027652 -11509607 - MTD LTR MaLR -16 403 45 7 1660 695 218 14 21 chr5 141028093 141028238 -11509021 + RSINE1 SINE B4 3 146 -19 7 1660 1415 91 37 0 chr5 141028384 141028571 -11508688 + B2_Mm2 SINE B2 2 195 0 7 1660 289 286 77 0 chr5 141028576 141028667 -11508592 + B4 SINE B4 81 178 -114 7 1660 492 245 0 0 chr5 141028586 141028680 -11508579 + B1_Mur2 SINE Alu 9 102 -47 7 1660 1021 53 47 0 chr5 141028680 141028850 -11508409 + (GA)n Simple_repeat Simple_repeat 2 179 0 7 1660 536 277 62 37 chr5 141029089 141029250 -11508009 - RSINE1 SINE B4 0 165 1 7 1660 369 271 36 36 chr5 141029722 141029833 -11507426 + PB1D7 SINE Alu 1 111 -9 7 1660 216 0 0 0 chr5 141030036 141030060 -11507199 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1660 673 168 76 55 chr5 141030066 141030211 -11507048 - B1_Mus1 SINE Alu 0 148 1 8 1660 1449 93 0 5 chr5 141030749 141030944 -11506315 + B2_Mm2 SINE B2 1 194 -1 8 1660 224 222 0 0 chr5 141031586 141031631 -11505628 - L2c LINE L2 -223 3164 3120 8 1660 208 366 20 0 chr5 141031880 141031981 -11505278 + (CATG)n Simple_repeat Simple_repeat 3 105 0 8 1660 1569 27 21 5 chr5 141032291 141032480 -11504779 - B2_Mm1a SINE B2 0 193 2 8 1660 1309 107 81 19 chr5 141033227 141033436 -11503823 - URR1A DNA MER1_type 0 226 5 8 1661 317 239 63 7 chr5 141033763 141033906 -11503353 + (TAGA)n Simple_repeat Simple_repeat 4 154 0 8 1661 632 98 113 20 chr5 141033906 141034035 -11503224 + B1_Mur4 SINE Alu 1 150 0 8 1661 528 200 0 0 chr5 141034042 141034152 -11503107 + GA-rich Low_complexity Low_complexity 4 113 0 8 1661 300 238 16 0 chr5 141034152 141034215 -11503044 + L1MEg LINE L1 1883 1946 -4138 8 1661 381 225 0 73 chr5 141034264 141034278 -11502981 + MT2B LTR ERVL 152 240 -361 9 1661 247 241 32 75 chr5 141034278 141034360 -11502899 + 4.5SRNA scRNA scRNA 1 80 -14 9 1661 4453 20 2 0 chr5 141034360 141034852 -11502407 - MT2_Mm LTR ERVL 0 493 1 9 1661 247 241 32 75 chr5 141034852 141034863 -11502396 + 4.5SRNA scRNA scRNA 81 90 -4 9 1661 354 179 46 35 chr5 141034890 141034977 -11502282 - ORR1A3-int LTR MaLR -1323 640 553 9 1661 21366 20 0 0 chr5 141034977 141037459 -11499800 - MERVL-int LTR ERVL -125 5360 2878 9 1661 4453 20 2 0 chr5 141037472 141037964 -11499295 - MT2_Mm LTR ERVL 0 493 1 9 1661 462 34 0 0 chr5 141037964 141038023 -11499236 + B1_Mus2 SINE Alu 79 137 -10 9 1661 215 31 31 0 chr5 141038023 141038055 -11499204 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 9 1661 761 259 91 9 chr5 141038105 141038366 -11498893 + B4A SINE B4 5 288 -4 9 1661 570 67 0 0 chr5 141038590 141038665 -11498594 + (CA)n Simple_repeat Simple_repeat 2 76 0 9 1661 404 309 83 81 chr5 141039730 141040138 -11497121 + RMER17C LTR ERVK 1 409 -1 1 1661 295 328 24 7 chr5 141042159 141042304 -11494955 + B4A SINE B4 6 151 -141 1 1661 202 253 0 71 chr5 141043603 141043688 -11493571 + CT-rich Low_complexity Low_complexity 3 81 0 1 1661 358 269 55 9 chr5 141043693 141043802 -11493457 - PB1D10 SINE Alu -3 114 1 1 1661 196 271 14 14 chr5 141043946 141044017 -11493242 - MIR SINE MIR -175 87 17 1 1661 213 228 70 0 chr5 141044126 141044143 -11493116 + B4 SINE B4 67 87 -205 1 1661 277 169 197 0 chr5 141044143 141044214 -11493045 + B1F2 SINE Alu 3 87 -62 1 1661 27 29 0 0 chr5 141044925 141044959 -11492300 + AT_rich Low_complexity Low_complexity 1 34 0 1 1661 1288 34 0 0 chr5 141044961 141045109 -11492150 - B1_Mus1 SINE Alu 0 148 1 1 1661 613 256 78 44 chr5 141045119 141045134 -11492125 - B4A SINE B4 0 292 278 1 1661 207 0 0 0 chr5 141045134 141045157 -11492102 + (CG)n Simple_repeat Simple_repeat 1 23 0 1 1661 613 256 78 44 chr5 141045157 141045345 -11491914 - B4A SINE B4 -15 277 82 1 1661 997 267 9 0 chr5 141045617 141045838 -11491421 - ID_B1 SINE B4 0 224 2 1 1661 338 315 0 36 chr5 141045847 141045959 -11491300 - PB1D7 SINE Alu -7 113 6 1 1661 233 352 0 81 chr5 141045866 141046002 -11491257 - ID_B1 SINE B4 -48 176 52 1 1661 29 0 0 0 chr5 141046027 141046056 -11491203 + AT_rich Low_complexity Low_complexity 1 29 0 1 1661 1213 68 0 0 chr5 141046061 141046208 -11491051 + B1_Mus2 SINE Alu 1 147 0 1 1661 255 303 22 0 chr5 141046428 141046517 -11490742 + MER33 DNA MER1_type 138 228 -96 1 1661 1065 183 64 5 chr5 141046549 141046752 -11490507 + B3 SINE B2 2 216 0 1 1661 212 167 21 0 chr5 141046754 141046802 -11490457 + (TG)n Simple_repeat Simple_repeat 1 49 0 1 1661 804 284 33 0 chr5 141046893 141047104 -11490155 - B4A SINE B4 -74 218 1 1 1661 865 113 75 0 chr5 141047124 141047257 -11490002 - B1_Mus1 SINE Alu -5 143 1 1 1661 332 273 61 0 chr5 141047307 141047406 -11489853 + PB1D7 SINE Alu 11 115 -5 1 1661 700 276 115 5 chr5 141047410 141047610 -11489649 + ID_B1 SINE B4 1 222 -2 1 1661 391 220 10 39 chr5 141048016 141048120 -11489139 + PB1D10 SINE Alu 2 102 -15 1 1661 1402 78 15 30 chr5 141048274 141048471 -11488788 - B2_Mm2 SINE B2 0 195 2 1 1661 189 278 19 0 chr5 141048570 141048624 -11488635 - MIR SINE MIR -59 149 95 1 1661 867 215 131 0 chr5 141048916 141049107 -11488152 - ID_B1 SINE B4 -4 220 5 1 1661 211 301 0 97 chr5 141049194 141049297 -11487962 - L2b LINE L2 0 3375 3283 1 1661 520 311 55 12 chr5 141049591 141049754 -11487505 + ID_B1 SINE B4 1 170 -54 1 1661 1127 100 0 7 chr5 141049767 141049918 -11487341 + B1_Mur4 SINE Alu 1 150 0 1 1661 335 154 0 15 chr5 141049926 141049992 -11487267 + GA-rich Low_complexity Low_complexity 3 67 0 1 1661 417 238 0 0 chr5 141050091 141050171 -11487088 + ID SINE ID 1 80 -144 1 1661 299 293 0 82 chr5 141050171 141050205 -11487054 + BC1_Mm scRNA scRNA 1 109 -43 1 1661 664 260 130 0 chr5 141050205 141050374 -11486885 + B3A SINE B2 3 193 -5 1 1661 299 293 0 82 chr5 141050374 141050393 -11486866 + BC1_Mm scRNA scRNA 110 123 -29 1 1661 1362 78 0 4 chr5 141050777 141051009 -11486250 + (CA)n Simple_repeat Simple_repeat 1 231 0 1 1661 1239 181 9 19 chr5 141051855 141052069 -11485190 - B3 SINE B2 0 216 5 1 1661 554 109 9 0 chr5 141052181 141052291 -11484968 + (TCTA)n Simple_repeat Simple_repeat 4 114 0 1 1661 930 221 173 76 chr5 141052394 141052437 -11484822 - MTD LTR MaLR 0 419 383 1 1661 1334 91 43 0 chr5 141052437 141052624 -11484635 + B2_Mm2 SINE B2 1 195 0 1 1661 930 221 173 76 chr5 141052624 141052962 -11484297 - MTD LTR MaLR -37 382 1 1 1661 180 216 0 0 chr5 141052962 141053013 -11484246 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 1 1661 903 161 0 0 chr5 141053050 141053230 -11484029 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1 1661 1071 74 0 29 chr5 141053750 141053889 -11483370 + B1_Mus1 SINE Alu 1 135 -13 1 1661 561 64 0 0 chr5 141053890 141053968 -11483291 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 1 1661 265 182 0 43 chr5 141054080 141054149 -11483110 + (TCTCTG)n Simple_repeat Simple_repeat 4 69 0 1 1661 201 74 0 0 chr5 141055785 141055812 -11481447 + (TGGGGG)n Simple_repeat Simple_repeat 4 30 0 1 1661 183 80 0 0 chr5 141056059 141056084 -11481175 + (GGGGA)n Simple_repeat Simple_repeat 5 29 0 1 1661 244 303 0 46 chr5 141056523 141056627 -11480632 + L2b LINE L2 3292 3385 -2 1 1661 468 0 0 0 chr5 141056787 141056839 -11480420 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1661 363 23 0 0 chr5 141056839 141056883 -11480376 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1661 478 156 144 0 chr5 141056892 141056982 -11480277 - B1_Mus1 SINE Alu -30 118 16 1 1661 329 186 67 34 chr5 141056907 141056996 -11480263 - MT2B LTR ERVL -344 257 166 1 1661 390 21 0 0 chr5 141057006 141057053 -11480206 + (GA)n Simple_repeat Simple_repeat 1 47 0 1 1661 477 0 0 0 chr5 141057886 141057939 -11479320 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1661 226 167 21 0 chr5 141058149 141058197 -11479062 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1661 294 236 139 16 chr5 141058306 141058435 -11478824 + ID_B1 SINE B4 80 224 0 1 1661 278 50 25 0 chr5 141058455 141058495 -11478764 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 1 1661 243 0 0 0 chr5 141058574 141058601 -11478658 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1661 1205 36 0 0 chr5 141058601 141058738 -11478521 - B1_Mm SINE Alu -10 137 1 1 1661 232 234 48 144 chr5 141058757 141058882 -11478377 + LTR87 LTR ERVL? 50 162 -462 1 1661 207 0 0 0 chr5 141059507 141059530 -11477729 + (GGCTG)n Simple_repeat Simple_repeat 4 26 0 1 1661 235 240 0 0 chr5 141060487 141060537 -11476722 - ID SINE ID -172 52 3 1 1661 198 71 0 0 chr5 141060558 141060586 -11476673 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 1 1661 237 279 44 0 chr5 141060586 141060647 -11476612 - PB1D10 SINE Alu -13 136 52 1 1661 572 244 27 75 chr5 141060996 141061182 -11476077 - RCHARR1 DNA MER1_type -4 970 794 1 1661 798 275 22 92 chr5 141061186 141061423 -11475836 + B4A SINE B4 2 230 -62 1 1661 385 208 186 10 chr5 141061423 141061525 -11475734 + PB1D9 SINE Alu 1 120 0 1 1661 798 275 22 92 chr5 141061525 141061559 -11475700 + B4A SINE B4 231 254 -38 1 1661 1910 122 60 14 chr5 141061556 141061676 -11475583 + ORR1B1 LTR MaLR 30 149 -245 1 1661 405 0 0 0 chr5 141061676 141061721 -11475538 + (TA)n Simple_repeat Simple_repeat 2 46 0 1 1661 1910 122 60 14 chr5 141061721 141061949 -11475310 + ORR1B1 LTR MaLR 150 392 -2 1 1661 859 211 33 19 chr5 141062137 141062350 -11474909 - RCHARR1 DNA MER1_type -290 684 469 1 1661 180 0 0 0 chr5 141062393 141062413 -11474846 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1661 229 337 11 0 chr5 141062417 141062506 -11474753 + PB1D10 SINE Alu 2 91 -26 1 1661 516 244 39 0 chr5 141062426 141062553 -11474706 + ID_B1 SINE B4 92 223 -1 1 1661 277 312 0 40 chr5 141063056 141063156 -11474103 + CT-rich Low_complexity Low_complexity 4 99 0 1 1661 530 252 31 76 chr5 141063202 141063425 -11473834 - RLTR18-int LTR ERVK -5146 215 3 1 1661 2649 156 103 43 chr5 141063454 141063572 -11473687 - RLTR18 LTR ERVK -2 614 491 1 1661 940 110 13 52 chr5 141063572 141063726 -11473533 - B1_Mur4 SINE Alu -1 149 2 1 1661 2649 156 103 43 chr5 141063726 141064171 -11473088 - RLTR18 LTR ERVK -126 490 17 1 1661 1848 144 65 15 chr5 141064171 141064508 -11472751 - ORR1B1 LTR MaLR 0 394 41 1 1661 384 236 15 1 chr5 141064563 141064666 -11472593 + PB1D9 SINE Alu 1 102 -15 1 1661 294 237 115 26 chr5 141064867 141064945 -11472314 + B4 SINE B4 11 95 -197 1 1661 469 262 72 57 chr5 141065441 141065635 -11471624 + B3A SINE B2 2 198 0 1 1661 645 256 77 12 chr5 141065673 141065843 -11471416 + B4 SINE B4 108 288 -4 1 1661 396 91 0 0 chr5 141065844 141065910 -11471349 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1661 324 83 0 0 chr5 141066372 141066420 -11470839 + (TGGA)n Simple_repeat Simple_repeat 4 51 0 1 1661 342 67 0 0 chr5 141066464 141066509 -11470750 + (TGGA)n Simple_repeat Simple_repeat 4 48 0 1 1661 940 244 4 43 chr5 141067275 141067506 -11469753 - ID_B1 SINE B4 0 224 3 1 1661 341 336 10 0 chr5 141068208 141068312 -11468947 + ID_B1 SINE B4 6 110 -114 1 1661 203 136 22 22 chr5 141068736 141068781 -11468478 + T-rich Low_complexity Low_complexity 4 48 0 1 1661 813 146 94 7 chr5 141068786 141068924 -11468335 - B1_Mur4 SINE Alu 0 150 1 1 1661 307 315 0 98 chr5 141068990 141069113 -11468146 + RSINE1 SINE B4 11 121 -44 1 1661 1021 169 157 10 chr5 141069282 141069479 -11467780 - URR1A DNA MER1_type 0 226 1 1 1661 1529 67 2 6 chr5 141070207 141070617 -11466642 + ZP3AR Satellite Satellite 1 408 0 1 1661 249 33 0 0 chr5 141070667 141070697 -11466562 + (TG)n Simple_repeat Simple_repeat 1 30 0 1 1661 213 39 0 0 chr5 141070789 141070815 -11466444 + (TGGG)n Simple_repeat Simple_repeat 3 28 0 1 1661 244 231 82 136 chr5 141071579 141071719 -11465540 + MIRc SINE MIR 24 158 -118 1 1661 432 0 0 0 chr5 141072542 141072590 -11464669 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1661 286 248 83 37 chr5 141072628 141072737 -11464522 + MIR3 SINE MIR 71 184 -24 1 1661 244 250 15 0 chr5 141073559 141073627 -11463632 - ID2 SINE ID -14 69 1 1 1661 1437 59 0 5 chr5 141073577 141073793 -11463466 - ZP3AR Satellite Satellite -14 214 1 1 1661 763 274 13 0 chr5 141074453 141074610 -11462649 + RSINE1 SINE B4 3 161 -4 1 1661 331 255 0 70 chr5 141074659 141074770 -11462489 + B1F SINE Alu 1 98 -19 1 1661 899 289 59 7 chr5 141074792 141075064 -11462195 + B4A SINE B4 1 286 -6 1 1661 312 48 0 0 chr5 141075069 141075111 -11462148 + (TC)n Simple_repeat Simple_repeat 1 42 0 1 1661 292 234 168 11 chr5 141075368 141075463 -11461796 + PB1D7 SINE Alu 6 115 -5 1 1661 1673 16 0 21 chr5 141075474 141075668 -11461591 + B2_Mm1a SINE B2 2 191 -2 1 1661 358 115 0 0 chr5 141075677 141075729 -11461530 + ZP3AR Satellite Satellite 44 95 -117 1 1661 304 294 15 0 chr5 141075729 141075797 -11461462 + ID4_ SINE ID 1 69 -14 1 1661 1198 81 0 0 chr5 141076724 141076872 -11460387 - B1_Mus1 SINE Alu 0 148 1 2 1661 213 196 0 0 chr5 141076899 141076955 -11460304 + (TCCA)n Simple_repeat Simple_repeat 4 59 0 2 1661 324 179 0 0 chr5 141077020 141077098 -11460161 + (TCCA)n Simple_repeat Simple_repeat 1 78 0 2 1661 437 286 22 39 chr5 141077156 141077338 -11459921 + (CCCA)n Simple_repeat Simple_repeat 2 180 0 2 1661 252 0 0 0 chr5 141078106 141078134 -11459125 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1661 281 102 41 0 chr5 141078195 141078244 -11459015 + (TATG)n Simple_repeat Simple_repeat 1 51 0 2 1661 856 292 99 19 chr5 141078252 141078514 -11458745 - B4 SINE B4 -3 289 7 2 1661 563 230 26 0 chr5 141078518 141078631 -11458628 - PB1D10 SINE Alu 0 117 2 2 1661 240 35 0 0 chr5 141079424 141079453 -11457806 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 2 1661 268 97 258 61 chr5 141079453 141079519 -11457740 - B2_Mm2 SINE B2 -36 159 81 2 1661 429 236 115 82 chr5 141079496 141079518 -11457741 - MT2B LTR ERVL -315 286 242 2 1661 688 157 0 0 chr5 141079518 141079626 -11457633 - B1_Mur1 SINE Alu -40 109 2 2 1661 429 236 115 82 chr5 141079626 141079704 -11457555 - MT2B LTR ERVL -315 241 72 2 1661 1599 42 7 5 chr5 141079754 141080221 -11457038 + ZP3AR Satellite Satellite 1 467 -106 2 1661 297 131 0 0 chr5 141081071 141081132 -11456127 + (GA)n Simple_repeat Simple_repeat 1 61 0 2 1661 189 132 0 0 chr5 141081570 141081608 -11455651 + (GGGTG)n Simple_repeat Simple_repeat 3 40 0 2 1661 337 187 584 22 chr5 141081638 141081775 -11455484 - ID_B1 SINE B4 0 224 11 2 1661 244 333 0 0 chr5 141081804 141081870 -11455389 - B1F SINE Alu -30 119 54 2 1661 572 271 58 6 chr5 141081964 141082120 -11455139 - RSINE1 SINE B4 0 165 2 2 1661 474 18 0 0 chr5 141084417 141084472 -11452787 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1661 21 0 0 0 chr5 141086815 141086836 -11450423 + GC_rich Low_complexity Low_complexity 1 21 0 2 1661 736 141 23 0 chr5 141089396 141089524 -11447735 - B1_Mus2 SINE Alu 0 147 17 2 1661 427 247 93 0 chr5 141089524 141089621 -11447638 - PB1D10 SINE Alu -11 106 1 2 1661 712 217 35 24 chr5 141089668 141089838 -11447421 - ID_B1 SINE B4 0 224 53 2 1661 233 191 0 0 chr5 141090528 141090570 -11446689 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 1661 1267 41 0 0 chr5 141091640 141091787 -11445472 + B1_Mus2 SINE Alu 1 147 0 2 1661 405 58 0 0 chr5 141091787 141091839 -11445420 + (A)n Simple_repeat Simple_repeat 1 52 0 2 1661 286 269 39 25 chr5 141092061 141092199 -11445060 - MIRc SINE MIR -125 151 6 2 1661 295 260 9 107 chr5 141093105 141093217 -11444042 + B1F SINE Alu 1 101 -48 2 1661 384 77 0 0 chr5 141093336 141093388 -11443871 + (ACTG)n Simple_repeat Simple_repeat 4 55 0 2 1661 718 120 144 0 chr5 141093390 141093515 -11443744 - B1_Mus1 SINE Alu -5 143 1 2 1661 350 240 0 83 chr5 141093607 141093625 -11443634 + ID_B1 SINE B4 78 177 -47 2 1661 460 189 0 11 chr5 141093625 141093716 -11443543 + B1F SINE Alu 10 99 -50 2 1661 22 35 0 0 chr5 141094339 141094368 -11442891 + AT_rich Low_complexity Low_complexity 1 29 0 2 1661 748 222 140 21 chr5 141094371 141094564 -11442695 + B3 SINE B2 1 216 0 2 1661 1297 101 28 0 chr5 141094588 141094767 -11442492 - B2_Mm2 SINE B2 -9 186 3 2 1661 357 24 0 0 chr5 141095011 141095053 -11442206 + (CA)n Simple_repeat Simple_repeat 1 42 0 2 1661 281 286 29 0 chr5 141095069 141095139 -11442120 + ID SINE ID 11 82 -142 2 1661 941 141 192 22 chr5 141095197 141095379 -11441880 + B3 SINE B2 3 215 -1 2 1661 235 307 26 26 chr5 141095752 141095829 -11441430 - ID4 SINE ID -4 79 3 2 1661 871 107 38 87 chr5 141096079 141096263 -11440996 - ZP3AR Satellite Satellite -4 208 34 2 1661 285 358 53 20 chr5 141096270 141096421 -11440838 + L2 LINE L2 2717 2872 -547 2 1661 495 0 0 0 chr5 141096475 141096530 -11440729 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 1661 414 0 0 0 chr5 141100227 141100273 -11436986 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1661 213 94 0 0 chr5 141100273 141100305 -11436954 + (CCTG)n Simple_repeat Simple_repeat 4 35 0 2 1661 207 232 0 0 chr5 141101577 141101633 -11435626 + GA-rich Low_complexity Low_complexity 4 59 0 2 1661 486 159 24 48 chr5 141101663 141101917 -11435342 + GA-rich Low_complexity Low_complexity 1 247 0 2 1661 228 211 0 38 chr5 141101977 141102056 -11435203 + GA-rich Low_complexity Low_complexity 2 77 0 2 1661 229 306 83 83 chr5 141102539 141102585 -11434674 - MT2B2 LTR ERVL -235 349 260 2 1661 714 174 0 0 chr5 141102585 141102706 -11434553 - ID_B1 SINE B4 -5 219 99 2 1661 229 306 83 83 chr5 141102706 141102781 -11434478 - MT2B2 LTR ERVL -235 259 108 2 1661 785 265 10 48 chr5 141103666 141103872 -11433387 - B3A SINE B2 0 198 1 2 1661 220 340 100 0 chr5 141103905 141104005 -11433254 - MIR SINE MIR -148 114 5 2 1661 260 354 8 16 chr5 141104009 141104138 -11433121 + (CCA)n Simple_repeat Simple_repeat 2 129 0 2 1661 352 341 0 38 chr5 141104169 141104355 -11432904 + (CCA)n Simple_repeat Simple_repeat 1 179 0 2 1661 207 0 0 0 chr5 141104591 141104614 -11432645 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 2 1661 777 68 39 0 chr5 141104614 141104717 -11432542 - PB1D9 SINE Alu -12 108 2 2 1661 392 250 72 10 chr5 141106011 141106108 -11431151 - PB1D7 SINE Alu -17 103 1 2 1661 769 220 156 0 chr5 141106191 141106341 -11430918 + B3 SINE B2 1 179 -37 2 1661 351 0 0 0 chr5 141106341 141106380 -11430879 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1661 769 220 156 0 chr5 141106380 141106415 -11430844 + B3 SINE B2 180 214 -2 2 1661 636 207 0 0 chr5 141106540 141106651 -11430608 - PB1D9 SINE Alu -9 111 1 2 1661 259 197 197 0 chr5 141106775 141106836 -11430423 - BC1_Mm scRNA scRNA -66 86 14 2 1661 306 267 107 41 chr5 141106840 141106961 -11430298 - ID_B1 SINE B4 -12 212 84 2 1661 427 257 48 0 chr5 141106972 141107077 -11430182 - PB1D10 SINE Alu -7 110 1 2 1661 383 0 21 0 chr5 141107128 141107175 -11430084 + (TG)n Simple_repeat Simple_repeat 2 49 0 2 1661 647 264 7 7 chr5 141107179 141107324 -11429935 - RSINE1 SINE B4 -19 146 2 2 1661 255 360 25 81 chr5 141108257 141108417 -11428842 - RMER12 LTR ERVK -423 899 749 2 1661 246 238 116 23 chr5 141108775 141108861 -11428398 - PB1D10 SINE Alu -1 116 23 2 1661 333 0 0 0 chr5 141109935 141109972 -11427287 + (TCCC)n Simple_repeat Simple_repeat 2 38 0 2 1661 201 273 18 0 chr5 141110389 141110444 -11426815 - MIR SINE MIR -104 104 49 2 1661 491 184 10 0 chr5 141110872 141110970 -11426289 - PB1D10 SINE Alu 0 117 19 2 1661 212 320 40 0 chr5 141110909 141110984 -11426275 - B4A SINE B4 -125 167 90 2 1661 244 321 103 35 chr5 141112102 141112276 -11424983 - MT2A LTR ERVL -83 450 265 2 1661 450 222 57 0 chr5 141112180 141112294 -11424965 + B1F1 SINE Alu 11 132 -17 2 1661 321 47 0 0 chr5 141112299 141112342 -11424917 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2 1661 891 231 34 5 chr5 141112346 141112555 -11424704 + B3 SINE B2 2 216 0 2 1661 517 239 60 23 chr5 141112590 141112723 -11424536 + RSINE1 SINE B4 3 140 -25 2 1661 432 0 0 0 chr5 141112739 141112787 -11424472 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1661 839 215 25 12 chr5 141114336 141114496 -11422763 + RSINE1 SINE B4 4 165 0 2 1661 290 248 37 157 chr5 141114813 141114947 -11422312 + MT2B LTR ERVL 137 254 -347 2 1661 458 184 63 72 chr5 141114850 141114961 -11422298 + PB1D9 SINE Alu 6 115 -5 2 1661 658 143 155 23 chr5 141115010 141115139 -11422120 + B1_Mur4 SINE Alu 5 150 0 2 1661 1256 48 0 0 chr5 141115152 141115298 -11421961 + B1_Mus2 SINE Alu 2 147 0 2 1661 2266 163 34 15 chr5 141116365 141116776 -11420483 - MTC LTR MaLR -2 419 1 2 1661 668 253 90 59 chr5 141118718 141118968 -11418291 - ID_B1 SINE B4 -18 274 12 2 1661 514 280 43 25 chr5 141119013 141119174 -11418085 - RSINE1 SINE B4 0 165 2 2 1661 405 229 65 19 chr5 141119174 141119281 -11417978 - PB1D10 SINE Alu 0 117 6 2 1661 800 90 189 0 chr5 141119305 141119427 -11417832 - B1_Mus1 SINE Alu -3 145 1 2 1661 422 280 50 83 chr5 141119970 141120188 -11417071 + ID_B1 SINE B4 3 213 -11 2 1661 218 158 136 34 chr5 141120177 141120232 -11417027 + RSINE1 SINE B4 11 71 -94 2 1661 1017 59 0 0 chr5 141120232 141120367 -11416892 + B2_Mm2 SINE B2 2 136 -59 2 1661 375 264 64 117 chr5 141120364 141120613 -11416646 + B4 SINE B4 57 292 0 2 1661 352 224 0 0 chr5 141120657 141120724 -11416535 + ID4 SINE ID 4 70 -13 2 1661 241 328 61 9 chr5 141120918 141121032 -11416227 + MLT1H-int LTR MaLR 831 950 -459 2 1661 323 286 136 45 chr5 141121408 141121562 -11415697 - ID_B1 SINE B4 -6 218 51 2 1661 210 288 82 0 chr5 141121725 141121798 -11415461 + L2c LINE L2 3122 3200 -187 2 1661 226 338 98 7 chr5 141122958 141123101 -11414158 - MIRb SINE MIR -72 196 41 2 1661 191 354 0 59 chr5 141123642 141123744 -11413515 - L3 LINE CR1 -2697 1792 1697 2 1661 339 121 0 0 chr5 141124898 141124956 -11412303 + (CTCGG)n Simple_repeat Simple_repeat 5 62 0 2 1661 219 297 7 40 chr5 141124958 141125109 -11412150 + C-rich Low_complexity Low_complexity 3 148 0 2 1661 242 254 32 0 chr5 141125446 141125509 -11411750 + MIR SINE MIR 79 143 -119 2 1661 189 188 0 0 chr5 141125529 141125561 -11411698 + MIR SINE MIR 201 232 -30 2 1661 307 194 0 0 chr5 141125631 141125693 -11411566 - ID4_ SINE ID -21 62 1 2 1661 435 288 17 8 chr5 141125696 141125815 -11411444 - PB1D7 SINE Alu 0 120 1 2 1661 266 310 12 12 chr5 141125815 141125841 -11411418 - B4A SINE B4 -207 85 60 2 1661 376 250 83 38 chr5 141126954 141127087 -11410172 + RSINE1 SINE B4 2 140 -25 2 1661 821 183 211 0 chr5 141127111 141127286 -11409973 + B3 SINE B2 2 213 -3 3 1661 252 370 18 53 chr5 141127842 141127956 -11409303 + PB1D10 SINE Alu 1 110 -7 3 1661 512 239 134 0 chr5 141128110 141128252 -11409007 + B4A SINE B4 124 284 -8 3 1661 715 168 122 0 chr5 141128342 141128473 -11408786 + B1_Mus2 SINE Alu 1 147 0 3 1661 385 309 6 62 chr5 141129204 141129366 -11407893 + ID_B1 SINE B4 72 224 0 3 1661 429 273 7 41 chr5 141129223 141129368 -11407891 + B1F1 SINE Alu 10 149 0 3 1661 922 109 0 0 chr5 141129381 141129518 -11407741 + B1_Mus2 SINE Alu 10 146 -1 3 1661 237 132 0 0 chr5 141129518 141129556 -11407703 + (GA)n Simple_repeat Simple_repeat 1 38 0 3 1661 353 212 8 0 chr5 141129668 141129786 -11407473 + (CA)n Simple_repeat Simple_repeat 2 120 0 3 1661 363 162 13 13 chr5 141129828 141129903 -11407356 + HAL1-3A_ME LINE L1 1976 2050 -808 3 1661 213 232 158 0 chr5 141130804 141130886 -11406373 - MIRc SINE MIR -77 191 97 3 1661 1106 94 71 6 chr5 141131007 141131189 -11406070 + MTC LTR MaLR 2 195 -226 3 1661 1136 121 0 6 chr5 141131182 141131357 -11405902 - B2_Mm2 SINE B2 -21 174 1 3 1661 1219 140 98 4 chr5 141131357 141131576 -11405683 + MTC LTR MaLR 181 421 0 3 1661 718 176 15 44 chr5 141131814 141131951 -11405308 + B1_Mm SINE Alu 5 137 -10 3 1661 297 0 0 0 chr5 141131952 141131985 -11405274 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1661 895 141 49 7 chr5 141131991 141132134 -11405125 + B1_Mur3 SINE Alu 1 149 0 3 1661 301 236 48 18 chr5 141132603 141132878 -11404381 + (TCCA)n Simple_repeat Simple_repeat 1 283 0 3 1661 23 0 0 0 chr5 141132981 141133004 -11404255 + AT_rich Low_complexity Low_complexity 1 23 0 3 1661 2398 35 187 39 chr5 141133046 141133375 -11403884 - L1_Mus2 LINE L1 -1 6565 6178 3 1661 1401 90 11 0 chr5 141133375 141133564 -11403695 + B2_Mm1t SINE B2 2 192 -1 3 1661 2398 35 187 39 chr5 141133564 141133624 -11403635 - L1_Mus2 LINE L1 -389 6177 6118 3 1661 399 286 133 51 chr5 141133625 141133820 -11403439 - B3 SINE B2 -3 213 3 3 1661 419 309 86 53 chr5 141134201 141134444 -11402815 - Lx8 LINE L1 -2 7471 7221 3 1661 257 246 0 16 chr5 141134447 141134509 -11402750 - PB1D10 SINE Alu -36 81 21 3 1661 229 250 107 0 chr5 141134468 141134524 -11402735 - B4A SINE B4 -146 146 85 3 1661 737 92 9 0 chr5 141134536 141134645 -11402614 - B1_Mur4 SINE Alu -31 119 10 3 1661 439 257 44 0 chr5 141134545 141134658 -11402601 - B4 SINE B4 -94 198 81 3 1661 653 266 249 17 chr5 141134731 141134782 -11402477 - B4 SINE B4 0 292 224 3 1661 270 56 0 0 chr5 141134782 141134818 -11402441 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 3 1661 653 266 249 17 chr5 141134818 141134897 -11402362 - B4 SINE B4 -69 223 139 3 1661 674 179 112 0 chr5 141134897 141135031 -11402228 - B1_Mur1 SINE Alu 0 149 1 3 1661 1254 111 26 16 chr5 141135038 141135230 -11402029 - B2_Mm2 SINE B2 0 195 2 3 1661 653 266 249 17 chr5 141135230 141135327 -11401932 - B4 SINE B4 -159 133 5 3 1661 381 303 30 8 chr5 141136336 141136469 -11400790 + B1F SINE Alu 1 136 -13 3 1661 574 292 14 7 chr5 141136510 141136648 -11400611 + RSINE1 SINE B4 7 145 -20 3 1661 462 36 0 0 chr5 141136648 141136704 -11400555 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1661 643 270 71 5 chr5 141136726 141136923 -11400336 + B4A SINE B4 3 212 -80 3 1661 671 298 38 19 chr5 141136924 141137123 -11400136 + B3 SINE B2 1 204 -12 3 1661 417 39 0 0 chr5 141137123 141137174 -11400085 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 1661 318 106 0 0 chr5 141137208 141137255 -11400004 + (CA)n Simple_repeat Simple_repeat 1 47 0 3 1661 414 267 89 24 chr5 141137270 141137393 -11399866 - RSINE1 SINE B4 -30 135 5 3 1661 284 243 122 0 chr5 141138238 141138312 -11398947 + ID2 SINE ID 1 83 0 3 1661 228 286 0 31 chr5 141138418 141138483 -11398776 + RMER4A LTR ERVK 362 424 -42 3 1661 378 235 7 161 chr5 141141658 141141795 -11395464 + ID_B1 SINE B4 81 196 -28 3 1661 367 254 24 183 chr5 141141659 141141828 -11395431 + B1F1 SINE Alu 1 142 -7 3 1661 434 169 12 0 chr5 141142625 141142708 -11394551 - PB1D10 SINE Alu -7 110 27 3 1661 1009 59 7 0 chr5 141142842 141142978 -11394281 + B1_Mus2 SINE Alu 11 147 0 3 1661 342 214 60 55 chr5 141142987 141143125 -11394134 - B3 SINE B2 -16 179 36 3 1661 292 223 54 72 chr5 141143270 141143381 -11393878 + PB1D10 SINE Alu 2 110 -7 3 1661 1459 56 16 0 chr5 141144035 141144561 -11392698 + ZP3AR Satellite Satellite 1 534 -3 3 1661 1312 111 32 0 chr5 141144568 141144757 -11392502 - B2_Mm2 SINE B2 0 195 1 3 1661 378 61 0 0 chr5 141145501 141145550 -11391709 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 1661 388 275 113 53 chr5 141145635 141145785 -11391474 - B4 SINE B4 -117 175 17 3 1661 1004 122 7 0 chr5 141145844 141145983 -11391276 - B1_Mus1 SINE Alu -8 140 1 3 1661 234 241 37 0 chr5 141146000 141146054 -11391205 - ID SINE ID -166 58 3 3 1661 319 222 42 0 chr5 141146743 141146815 -11390444 - B1F SINE Alu -1 148 74 3 1661 251 350 86 53 chr5 141146804 141146815 -11390444 + YREP_Mm Unknown Unknown 178 210 -1602 3 1661 556 216 12 8 chr5 141146815 141146944 -11390315 - B1F SINE Alu -18 131 1 3 1661 251 350 86 53 chr5 141146944 141146991 -11390268 + YREP_Mm Unknown Unknown 211 370 -1442 3 1661 365 300 0 26 chr5 141148171 141148284 -11388975 - PB1D7 SINE Alu -1 119 10 3 1661 302 265 0 0 chr5 141148411 141148479 -11388780 - tRNA-Ala-GCY_ tRNA tRNA -6 69 2 3 1661 403 179 19 78 chr5 141148443 141148546 -11388713 - ZP3AR Satellite Satellite -74 138 42 3 1661 196 306 56 56 chr5 141148670 141148760 -11388499 + L4 LINE RTE 1423 1512 -517 3 1661 255 304 49 65 chr5 141148831 141148954 -11388305 + PB1 SINE Alu 5 125 -2 3 1661 226 275 14 0 chr5 141148957 141149026 -11388233 + ZP3AR Satellite Satellite 143 212 0 3 1661 1562 41 16 0 chr5 141149083 141149373 -11387886 + ZP3AR Satellite Satellite 1 294 0 3 1661 1322 84 11 22 chr5 141149777 141149960 -11387299 + B2_Mm2 SINE B2 1 181 -14 3 1661 336 233 0 14 chr5 141149976 141150050 -11387209 + B3A SINE B2 2 74 -124 3 1661 233 295 47 19 chr5 141150050 141150083 -11387176 + RSINE1 SINE B4 3 112 -53 3 1661 335 311 24 24 chr5 141150443 141150568 -11386691 + L1MC4 LINE L1 6942 7066 -976 3 1661 797 246 23 0 chr5 141151583 141151758 -11385501 + B4A SINE B4 4 182 -110 3 1661 446 253 388 39 chr5 141152138 141152344 -11384915 - B4A SINE B4 -14 278 1 3 1661 345 199 39 29 chr5 141152344 141152425 -11384834 - PB1D10 SINE Alu -37 83 2 3 1661 447 260 0 19 chr5 141152735 141152841 -11384418 + PB1D10 SINE Alu 14 117 0 3 1661 671 164 9 9 chr5 141152839 141152950 -11384309 + ZP3AR Satellite Satellite 38 148 -64 3 1661 322 182 37 61 chr5 141152950 141153032 -11384227 + ID4 SINE ID 1 80 -3 3 1661 685 285 26 0 chr5 141153661 141153850 -11383409 + ID_B1 SINE B4 8 201 -23 3 1661 237 284 7 183 chr5 141153850 141153992 -11383267 + PB1D10 SINE Alu 1 117 0 3 1661 1052 197 91 0 chr5 141154747 141154945 -11382314 - B3 SINE B2 0 216 1 3 1661 1025 266 78 24 chr5 141154958 141155328 -11381931 + RMER5 LTR ERV1 47 436 -98 3 1661 648 250 18 53 chr5 141155489 141155658 -11381601 - RSINE1 SINE B4 0 165 3 3 1661 307 265 70 20 chr5 141155964 141156064 -11381195 - PB1D10 SINE Alu 0 117 13 3 1661 209 228 35 0 chr5 141156309 141156366 -11380893 + (TAGGG)n Simple_repeat Simple_repeat 2 60 0 3 1661 351 223 7 13 chr5 141156517 141156608 -11380651 - PB1D10 SINE Alu -46 103 11 3 1661 1514 72 24 6 chr5 141157454 141157848 -11379411 - ZP3AR Satellite Satellite -21 400 1 3 1661 237 352 77 47 chr5 141158562 141158657 -11378602 - B4A SINE B4 -115 177 3 3 1661 316 270 0 13 chr5 141158657 141158732 -11378527 - ID4_ SINE ID -7 76 3 3 1661 189 256 0 0 chr5 141158959 141159002 -11378257 + L2 LINE L2 2518 2560 -859 3 1661 325 305 0 0 chr5 141159008 141159090 -11378169 + ID2 SINE ID 2 83 0 3 1661 510 17 0 0 chr5 141159587 141159646 -11377613 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 1661 1107 194 32 14 chr5 141159751 141159971 -11377288 - ID_B1 SINE B4 0 224 1 3 1661 227 297 68 19 chr5 141159975 141160078 -11377181 - PB1D9 SINE Alu -8 112 5 3 1661 361 221 0 49 chr5 141160134 141160215 -11377044 + ID4_ SINE ID 3 79 -4 3 1661 1151 200 36 4 chr5 141160268 141160519 -11376740 + Lx5 LINE L1 6653 6911 -139 3 1661 242 325 12 35 chr5 141160746 141160832 -11376427 - MER82 DNA MER2_type -541 112 29 3 1661 358 296 121 36 chr5 141160896 141161036 -11376223 - B4A SINE B4 -3 289 138 3 1661 23 33 0 0 chr5 141161280 141161310 -11375949 + AT_rich Low_complexity Low_complexity 1 30 0 3 1661 334 200 71 115 chr5 141161342 141161455 -11375804 + B4A SINE B4 185 292 0 3 1661 2246 144 60 18 chr5 141161477 141161859 -11375400 + RMER10B LTR ERVL 1 398 0 3 1661 373 266 54 27 chr5 141162624 141162736 -11374523 + PB1D10 SINE Alu 2 116 -1 3 1661 342 0 0 0 chr5 141163028 141163066 -11374193 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1661 1539 42 16 4 chr5 141163211 141163541 -11373718 + ZP3AR Satellite Satellite 1 333 -2 3 1661 467 171 0 0 chr5 141164029 141164105 -11373154 + RSINE1 SINE B4 66 141 -24 3 1661 1292 27 0 0 chr5 141164162 141164309 -11372950 - B1_Mus2 SINE Alu 0 147 1 3 1662 645 234 7 7 chr5 141164703 141164845 -11372414 + B4A SINE B4 1 142 -150 3 1662 401 279 48 75 chr5 141164845 141164889 -11372370 + B3A SINE B2 1 181 -17 4 1662 235 235 189 69 chr5 141164850 141165083 -11372176 - RLTR21 LTR ERVK -299 1273 1013 4 1662 234 197 273 0 chr5 141165399 141165465 -11371794 - ID_B1 SINE B4 0 224 141 4 1662 216 0 0 0 chr5 141165470 141165494 -11371765 + (TATG)n Simple_repeat Simple_repeat 3 26 0 4 1662 532 254 90 0 chr5 141166040 141166110 -11371149 + RSINE1 SINE B4 4 73 -92 4 1662 378 0 0 0 chr5 141166110 141166152 -11371107 + (CA)n Simple_repeat Simple_repeat 2 43 0 4 1662 532 254 90 0 chr5 141166152 141166203 -11371056 + RSINE1 SINE B4 74 134 -31 4 1662 361 250 0 0 chr5 141166315 141166395 -11370864 - B1F SINE Alu -51 98 19 4 1662 445 125 0 40 chr5 141166437 141166512 -11370747 + B2_Mm2 SINE B2 2 73 -122 4 1662 1553 37 17 7 chr5 141166526 141166915 -11370344 - ZP3AR Satellite Satellite 0 392 1 4 1662 301 231 157 0 chr5 141167262 141167383 -11369876 - B1F2 SINE Alu -1 148 9 4 1662 327 65 0 0 chr5 141167861 141167907 -11369352 + (TG)n Simple_repeat Simple_repeat 2 47 0 4 1662 803 262 130 8 chr5 141167907 141168161 -11369098 - B4A SINE B4 -2 290 6 4 1662 447 308 25 12 chr5 141168345 141168506 -11368753 + RSINE1 SINE B4 3 165 0 4 1662 193 53 51 26 chr5 141168639 141168678 -11368581 + (CAAAC)n Simple_repeat Simple_repeat 2 41 0 4 1662 276 195 53 84 chr5 141169760 141169855 -11367404 - B3A SINE B2 0 198 107 4 1662 225 333 14 0 chr5 141169854 141169926 -11367333 - B2_Mm2 SINE B2 -117 78 6 4 1662 283 164 218 0 chr5 141169983 141170038 -11367221 - ID4 SINE ID -16 67 1 4 1662 24 0 0 0 chr5 141170343 141170367 -11366892 + AT_rich Low_complexity Low_complexity 1 24 0 4 1662 821 185 13 20 chr5 141170373 141170522 -11366737 - B1_Mur3 SINE Alu 0 149 2 4 1662 962 150 0 20 chr5 141170541 141170691 -11366568 + B1_Mus1 SINE Alu 2 148 0 4 1662 1107 104 0 90 chr5 141170698 141170898 -11366361 + B2_Mm2 SINE B2 14 195 0 4 1662 1263 34 0 7 chr5 141170900 141171048 -11366211 + B1_Mm SINE Alu 1 147 0 4 1662 321 89 0 0 chr5 141171049 141171094 -11366165 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 4 1662 1694 31 0 0 chr5 141171178 141171371 -11365888 - B2_Mm1a SINE B2 0 193 1 4 1662 474 238 0 0 chr5 141171514 141171615 -11365644 - B3 SINE B2 -111 105 5 4 1662 469 231 66 22 chr5 141171739 141171876 -11365383 + ID_B1 SINE B4 82 224 0 4 1662 435 106 0 0 chr5 141171886 141171952 -11365307 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1662 854 304 50 14 chr5 141172357 141172637 -11364622 + B4 SINE B4 1 290 -2 4 1662 622 186 0 17 chr5 141173227 141173342 -11363917 + B1_Mus2 SINE Alu 33 145 -2 4 1662 1887 184 152 58 chr5 141173823 141174341 -11362918 + RMER15 LTR ERVL 9 575 0 4 1662 1480 67 11 2 chr5 141174540 141174881 -11362378 + ZP3AR Satellite Satellite 1 344 -4 4 1662 234 301 82 24 chr5 141174913 141174998 -11362261 - B3 SINE B2 -125 91 2 4 1662 674 274 77 29 chr5 141175062 141175269 -11361990 - ID_B1 SINE B4 -6 218 2 4 1662 1198 61 0 0 chr5 141175279 141175426 -11361833 - B1_Mus1 SINE Alu -1 147 1 4 1662 259 224 35 0 chr5 141175910 141175968 -11361291 + B4 SINE B4 116 175 -117 4 1662 360 111 0 0 chr5 141176296 141176350 -11360909 + (TG)n Simple_repeat Simple_repeat 1 54 0 4 1662 258 299 39 0 chr5 141176350 141176427 -11360832 - B3A SINE B2 -44 154 75 4 1662 431 296 175 20 chr5 141176462 141176714 -11360545 - B4A SINE B4 0 292 2 4 1662 450 218 20 0 chr5 141176742 141176843 -11360416 + PB1D10 SINE Alu 10 112 -5 4 1662 246 230 35 130 chr5 141177166 141177281 -11359978 + ZP3AR Satellite Satellite 35 138 -74 4 1662 212 111 0 22 chr5 141178402 141178448 -11358811 + (TTTTG)n Simple_repeat Simple_repeat 5 49 0 4 1662 189 0 0 0 chr5 141178949 141178970 -11358289 + (TG)n Simple_repeat Simple_repeat 2 22 0 4 1662 232 263 35 0 chr5 141178996 141179053 -11358206 - B4A SINE B4 -151 141 83 4 1662 342 169 55 27 chr5 141179245 141179318 -11357941 - RLTR23 LTR ERV1 -2 428 354 4 1662 799 107 28 84 chr5 141179341 141179484 -11357775 + B1_Mus1 SINE Alu 1 135 -13 4 1662 1038 75 81 12 chr5 141179479 141179640 -11357619 - B2_Mm2 SINE B2 -21 174 3 4 1662 625 172 143 115 chr5 141179643 141179789 -11357470 - RLTR23 LTR ERV1 -63 367 210 4 1662 303 28 0 0 chr5 141179789 141179825 -11357434 + (TG)n Simple_repeat Simple_repeat 1 36 0 4 1662 625 172 143 115 chr5 141179825 141179895 -11357364 - RLTR23 LTR ERV1 -221 209 145 4 1662 392 213 0 0 chr5 141179832 141179907 -11357352 - B3A SINE B2 -123 75 1 4 1662 1242 41 0 0 chr5 141180217 141180363 -11356896 + B1_Mm SINE Alu 1 146 -1 4 1662 1133 49 14 14 chr5 141181654 141181798 -11355461 + B1_Mus1 SINE Alu 5 148 0 4 1662 849 122 0 21 chr5 141182446 141182588 -11354671 - B1_Mus2 SINE Alu 0 147 9 4 1662 216 0 0 0 chr5 141182590 141182614 -11354645 + (T)n Simple_repeat Simple_repeat 1 24 0 4 1662 244 327 61 35 chr5 141182775 141182889 -11354370 - PB1D10 SINE Alu 0 117 1 4 1662 654 232 30 30 chr5 141182889 141182969 -11354290 - ID SINE ID -143 81 2 4 1662 628 208 27 40 chr5 141183104 141183254 -11354005 - B1_Mur3 SINE Alu 0 149 2 4 1662 201 250 0 19 chr5 141183257 141183310 -11353949 + (TG)n Simple_repeat Simple_repeat 2 53 0 4 1662 572 265 178 27 chr5 141183349 141183574 -11353685 - B4A SINE B4 -23 269 11 4 1662 536 218 13 72 chr5 141183571 141183724 -11353535 - B1_Mus2 SINE Alu 0 147 4 4 1662 322 194 16 0 chr5 141183735 141183797 -11353462 - L1MB8 LINE L1 0 6178 6116 4 1662 672 261 29 0 chr5 141183803 141183941 -11353318 + B1F SINE Alu 1 142 -7 4 1662 400 273 66 8 chr5 141184105 141184227 -11353032 + ID_B1 SINE B4 63 191 -33 4 1662 432 278 18 18 chr5 141184280 141184378 -11352881 + ID_B1 SINE B4 114 213 -11 4 1662 189 0 0 0 chr5 141184378 141184399 -11352860 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 4 1662 432 278 18 18 chr5 141184399 141184410 -11352849 + ID_B1 SINE B4 214 223 -1 4 1662 959 126 35 7 chr5 141184518 141184662 -11352597 + B1_Mur3 SINE Alu 2 149 0 4 1662 459 274 0 33 chr5 141184679 141184800 -11352459 + PB1D10 SINE Alu 1 117 0 4 1662 799 187 13 39 chr5 141185042 141185198 -11352061 - ZP3AR Satellite Satellite -25 187 36 4 1662 321 82 0 0 chr5 141185381 141185430 -11351829 + (T)n Simple_repeat Simple_repeat 1 49 0 4 1662 1237 34 7 0 chr5 141185433 141185579 -11351680 - B1_Mm SINE Alu 0 147 1 4 1662 1396 59 15 79 chr5 141185584 141185786 -11351473 - B2_Mm2 SINE B2 -6 189 1 4 1662 606 272 8 8 chr5 141185802 141185965 -11351294 - ID_B1 SINE B4 0 224 68 4 1662 926 155 14 0 chr5 141186891 141187033 -11350226 - B1_Mur2 SINE Alu -3 146 3 4 1662 1050 235 14 0 chr5 141187055 141187268 -11349991 - B3 SINE B2 0 216 1 4 1662 486 277 18 0 chr5 141187276 141187388 -11349871 - PB1D9 SINE Alu -6 114 1 4 1662 246 304 58 42 chr5 141187649 141187769 -11349490 + MIRm SINE MIR 66 187 -89 4 1662 250 317 0 106 chr5 141187844 141187881 -11349378 + MT2B LTR ERVL 134 234 -367 4 1662 396 224 0 0 chr5 141187881 141187957 -11349302 + B1_Mus1 SINE Alu 3 78 -70 4 1662 456 189 15 165 chr5 141188153 141188286 -11348973 + B1_Mur3 SINE Alu 36 148 -1 4 1662 281 312 0 43 chr5 141189215 141189376 -11347883 + (CAGG)n Simple_repeat Simple_repeat 3 156 0 4 1662 212 295 16 0 chr5 141189403 141189464 -11347795 + CT-rich Low_complexity Low_complexity 4 65 0 4 1662 264 304 0 28 chr5 141189464 141189535 -11347724 - ID4 SINE ID -8 75 7 4 1662 481 211 0 10 chr5 141189498 141189594 -11347665 - ZP3AR Satellite Satellite -74 138 44 4 1662 352 264 47 0 chr5 141189600 141189706 -11347553 - B1_Mus1 SINE Alu 0 148 38 4 1662 440 237 21 0 chr5 141191266 141191363 -11345896 + PB1D10 SINE Alu 3 101 -16 4 1662 705 205 24 0 chr5 141191366 141191493 -11345766 + B1_Mur2 SINE Alu 1 130 -19 4 1662 1490 240 108 28 chr5 141191642 141192105 -11345154 - RLTR11A LTR ERVK -28 500 1 4 1662 256 218 36 60 chr5 141192207 141192290 -11344969 - PB1D7 SINE Alu 0 120 40 4 1662 768 244 98 5 chr5 141193515 141193729 -11343530 - MTEa LTR MaLR 0 379 146 4 1662 448 241 46 9 chr5 141194655 141194764 -11342495 + PB1D10 SINE Alu 1 113 -4 4 1662 1213 228 44 15 chr5 141194799 141195071 -11342188 - B4 SINE B4 -8 284 5 4 1662 1235 240 209 40 chr5 141195233 141196047 -11341212 - ORR1B2-int LTR MaLR -87 1011 1 4 1662 1105 139 377 8 chr5 141196084 141196352 -11340907 - ORR1B2 LTR MaLR 0 367 1 4 1662 851 241 65 19 chr5 141196729 141196991 -11340268 - MTEb LTR MaLR -46 333 60 4 1662 180 256 0 0 chr5 141197337 141197380 -11339879 + MIRc SINE MIR 107 149 -119 4 1662 1616 252 25 0 chr5 141197397 141197762 -11339497 - MTC LTR MaLR -8 413 40 4 1662 243 302 46 11 chr5 141197885 141197972 -11339287 - MLT1A1 LTR MaLR -8 400 311 4 1662 384 22 0 0 chr5 141198574 141198619 -11338640 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1662 367 282 168 7 chr5 141198669 141198812 -11338447 - B3A SINE B2 -30 168 3 4 1662 284 296 12 24 chr5 141198812 141198887 -11338372 - B4A SINE B4 -68 224 151 4 1662 877 259 37 9 chr5 141199210 141199424 -11337835 - B4A SINE B4 -60 232 13 4 1662 222 179 69 35 chr5 141202748 141202806 -11334453 - B1F SINE Alu -13 136 77 4 1662 762 196 72 0 chr5 141202806 141202959 -11334300 - ID_B1 SINE B4 -11 213 50 4 1662 358 242 20 20 chr5 141203607 141203708 -11333551 + CYRA11_Mm Unknown Y-chromosome 216 316 -301 4 1662 576 80 11 11 chr5 141203620 141203709 -11333550 - URR1A DNA MER1_type -57 169 81 4 1662 416 171 13 0 chr5 141203771 141203847 -11333412 - B1_Mus2 SINE Alu -16 131 55 5 1662 286 73 0 0 chr5 141203845 141203886 -11333373 + ID_B1 SINE B4 115 155 -69 5 1662 711 229 0 0 chr5 141203888 141204028 -11333231 + RSINE1 SINE B4 3 142 -23 5 1662 977 143 7 0 chr5 141204155 141204302 -11332957 + B1_Mus1 SINE Alu 1 148 0 5 1662 1356 111 16 0 chr5 141204429 141204618 -11332641 - B2_Mm2 SINE B2 -2 193 2 5 1662 1156 88 0 0 chr5 141205104 141205251 -11332008 - B1_Mus1 SINE Alu 0 148 2 5 1662 724 169 39 0 chr5 141205263 141205393 -11331866 - B1_Mur1 SINE Alu 0 149 15 5 1662 311 321 44 98 chr5 141205288 141205414 -11331845 - MT2B LTR ERVL -319 282 168 5 1662 234 0 0 0 chr5 141205414 141205440 -11331819 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 5 1662 311 321 44 98 chr5 141205440 141205517 -11331742 - MT2B LTR ERVL -434 167 90 5 1662 360 231 73 49 chr5 141205474 141205597 -11331662 - B4A SINE B4 -166 126 1 5 1662 337 265 33 43 chr5 141205701 141205795 -11331464 + PB1D9 SINE Alu 8 101 -19 5 1662 765 158 16 0 chr5 141205896 141206023 -11331236 + B1_Mur4 SINE Alu 1 129 -21 5 1662 1139 96 72 0 chr5 141206032 141206199 -11331060 + B2_Mm2 SINE B2 1 179 -16 5 1662 205 51 0 49 chr5 141206199 141206240 -11331019 + (TTTTTG)n Simple_repeat Simple_repeat 5 43 0 5 1662 1178 61 0 7 chr5 141206240 141206389 -11330870 - B1_Mus1 SINE Alu 0 148 1 5 1662 210 91 0 0 chr5 141206390 141206423 -11330836 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 5 1662 183 42 0 0 chr5 141206595 141206619 -11330640 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1662 373 194 32 21 chr5 141206865 141206960 -11330299 + PB1D10 SINE Alu 5 100 -17 5 1662 1069 97 7 7 chr5 141207240 141207385 -11329874 - B1_Mur4 SINE Alu -5 145 1 5 1662 535 176 7 33 chr5 141207820 141207973 -11329286 + CT-rich Low_complexity Low_complexity 3 151 0 5 1662 647 216 0 31 chr5 141207985 141208114 -11329145 - B1_Mur2 SINE Alu -8 141 17 5 1662 23 33 0 0 chr5 141208145 141208175 -11329084 + AT_rich Low_complexity Low_complexity 1 30 0 5 1662 735 99 0 26 chr5 141208175 141208289 -11328970 - B1_Mm SINE Alu 0 147 37 5 1662 590 199 88 56 chr5 141208289 141208449 -11328810 - B3A SINE B2 -33 165 1 5 1662 516 290 0 37 chr5 141208914 141209050 -11328209 - RSINE1 SINE B4 -33 132 2 5 1662 784 182 35 7 chr5 141209106 141209250 -11328009 + B1_Mus1 SINE Alu 1 148 0 5 1662 967 303 41 64 chr5 141209347 141209735 -11327524 - MTE2a LTR MaLR 0 379 1 5 1662 414 0 0 0 chr5 141210026 141210072 -11327187 + (TC)n Simple_repeat Simple_repeat 2 47 0 5 1662 1381 105 5 0 chr5 141210500 141210691 -11326568 - B2_Mm2 SINE B2 -2 193 2 5 1662 794 245 30 54 chr5 141210782 141210985 -11326274 + ID_B1 SINE B4 1 198 -26 5 1662 309 304 29 94 chr5 141210866 141211004 -11326255 + B1F2 SINE Alu 5 133 -16 5 1662 231 139 27 27 chr5 141211050 141211124 -11326135 + T-rich Low_complexity Low_complexity 4 77 0 5 1662 403 243 38 19 chr5 141211137 141211242 -11326017 - PB1D10 SINE Alu 0 117 11 5 1662 246 252 191 37 chr5 141211139 141211247 -11326012 - B4A SINE B4 -68 224 94 5 1662 204 40 0 0 chr5 141211247 141211272 -11325987 + (CCCCCA)n Simple_repeat Simple_repeat 3 27 0 5 1662 246 252 191 37 chr5 141211272 141211299 -11325960 - B4A SINE B4 -199 93 68 5 1662 453 179 9 12 chr5 141212432 141212543 -11324716 + B1F SINE Alu 20 120 0 5 1662 1081 183 108 10 chr5 141212801 141213005 -11324254 - URR1A DNA MER1_type 0 226 3 5 1662 186 297 75 21 chr5 141213041 141213134 -11324125 + MIRm SINE MIR 91 188 -88 5 1662 288 0 0 0 chr5 141213683 141213715 -11323544 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1662 233 119 24 0 chr5 141213715 141213757 -11323502 + (GA)n Simple_repeat Simple_repeat 2 44 0 5 1662 557 151 0 0 chr5 141213759 141213845 -11323414 - B1F SINE Alu -47 102 17 5 1662 211 57 114 0 chr5 141213951 141213986 -11323273 + B1F SINE Alu 100 138 -11 5 1662 227 374 8 25 chr5 141214148 141214266 -11322993 + MIRb SINE MIR 83 198 -70 5 1662 855 275 0 56 chr5 141214324 141214540 -11322719 + B4A SINE B4 89 292 0 5 1662 621 204 0 0 chr5 141214542 141214881 -11322378 + (CA)n Simple_repeat Simple_repeat 1 339 0 5 1662 828 98 58 36 chr5 141214941 141215078 -11322181 - B1_Mus1 SINE Alu -8 140 1 5 1662 1494 58 7 2 chr5 141215252 141215596 -11321663 + ZP3AR Satellite Satellite 1 345 0 5 1662 498 33 0 0 chr5 141215669 141215729 -11321530 + (GA)n Simple_repeat Simple_repeat 1 60 0 5 1662 432 294 51 35 chr5 141216567 141216790 -11320469 + B4A SINE B4 2 271 -21 5 1662 403 63 32 0 chr5 141216798 141216861 -11320398 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1662 1335 62 36 3 chr5 141217573 141217932 -11319327 + ZP3AR Satellite Satellite 1 371 -1 5 1662 504 0 0 0 chr5 141218557 141218613 -11318646 + (TTTC)n Simple_repeat Simple_repeat 1 56 0 5 1662 829 153 13 0 chr5 141218614 141218771 -11318488 + CT-rich Low_complexity Low_complexity 1 159 0 5 1662 1190 92 98 0 chr5 141218772 141218946 -11318313 - B2_Mm2 SINE B2 -3 192 2 5 1662 228 280 0 0 chr5 141219116 141219166 -11318093 + polypyrimidine Low_complexity Low_complexity 4 53 0 5 1662 474 283 81 27 chr5 141219181 141219366 -11317893 - B3A SINE B2 -2 196 2 5 1662 980 229 46 9 chr5 141219377 141219593 -11317666 - ID_B1 SINE B4 0 224 1 5 1662 330 26 0 0 chr5 141220270 141220309 -11316950 + (TG)n Simple_repeat Simple_repeat 1 39 0 5 1662 914 243 0 5 chr5 141220312 141220502 -11316757 - B4 SINE B4 -24 268 80 5 1662 883 200 87 0 chr5 141220527 141220712 -11316547 - B3 SINE B2 -6 210 10 5 1662 341 295 83 0 chr5 141220743 141220899 -11316360 - B3 SINE B2 -1 215 47 5 1662 384 179 34 45 chr5 141220921 141221009 -11316250 - PB1D10 SINE Alu -5 112 26 5 1662 456 231 36 8 chr5 141221359 141221484 -11315775 + B1F SINE Alu 22 149 0 5 1662 900 57 21 14 chr5 141221484 141221626 -11315633 + ZP3AR Satellite Satellite 49 191 -21 5 1662 555 190 11 13 chr5 141221735 141221872 -11315387 - PB1D9 SINE Alu 0 149 10 5 1662 300 222 26 53 chr5 141221785 141221899 -11315360 - B4 SINE B4 -112 180 70 5 1662 180 0 0 103 chr5 141221899 141221938 -11315321 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1662 1206 68 0 0 chr5 141221940 141222088 -11315171 - B1_Mus1 SINE Alu 0 148 1 5 1662 34 0 0 0 chr5 141222088 141222122 -11315137 + AT_rich Low_complexity Low_complexity 1 34 0 5 1662 357 174 0 0 chr5 141222146 141222215 -11315044 + CT-rich Low_complexity Low_complexity 2 70 0 5 1662 868 202 60 5 chr5 141222216 141222400 -11314859 - B2_Mm2 SINE B2 0 195 2 5 1662 198 103 0 0 chr5 141223230 141223259 -11314000 + (TG)n Simple_repeat Simple_repeat 2 30 0 5 1662 402 251 0 0 chr5 141223275 141223523 -11313736 + (TG)n Simple_repeat Simple_repeat 1 248 0 5 1662 716 287 46 43 chr5 141223534 141223814 -11313445 - B4 SINE B4 0 292 12 5 1662 391 35 35 0 chr5 141224314 141224371 -11312888 + (TGGGGG)n Simple_repeat Simple_repeat 1 59 0 5 1662 201 108 0 0 chr5 141225341 141225378 -11311881 + (GA)n Simple_repeat Simple_repeat 2 38 0 5 1662 772 138 21 35 chr5 141226009 141226152 -11311107 + B1_Mur2 SINE Alu 9 149 0 5 1662 1160 146 34 5 chr5 141226193 141226399 -11310860 - B3 SINE B2 -4 212 1 5 1662 1221 27 0 0 chr5 141226811 141226958 -11310301 + B1_Mus2 SINE Alu 1 147 0 5 1662 207 0 0 0 chr5 141226958 141226981 -11310278 + (A)n Simple_repeat Simple_repeat 1 23 0 5 1662 398 258 13 13 chr5 141227032 141227145 -11310114 + B3A SINE B2 58 170 -46 5 1662 537 287 135 62 chr5 141227177 141227372 -11309887 + B4A SINE B4 1 228 -64 5 1662 1074 54 0 58 chr5 141227372 141227528 -11309731 + B1_Mus2 SINE Alu 1 147 0 5 1662 537 287 135 62 chr5 141227528 141227592 -11309667 + B4A SINE B4 229 279 -13 5 1662 627 268 70 16 chr5 141228744 141228930 -11308329 - B3A SINE B2 -2 196 1 5 1662 279 0 0 0 chr5 141229294 141229325 -11307934 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1662 281 277 60 60 chr5 141229479 141229655 -11307604 - MTE2b LTR MaLR -7 372 206 5 1662 42 0 0 0 chr5 141229763 141229805 -11307454 + AT_rich Low_complexity Low_complexity 1 42 0 5 1662 294 265 80 20 chr5 141229808 141229908 -11307351 - ID_B1 SINE B4 -2 222 117 5 1662 215 114 23 0 chr5 141230420 141230464 -11306795 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1662 713 233 7 0 chr5 141230508 141230654 -11306605 - B1_Mm SINE Alu 0 147 1 5 1662 1166 130 11 0 chr5 141230664 141230848 -11306411 - B2_Mm2 SINE B2 -9 186 1 5 1662 653 236 62 171 chr5 141230881 141231041 -11306218 - B4 SINE B4 -62 230 91 5 1662 907 151 7 0 chr5 141231041 141231187 -11306072 - B1_Mur4 SINE Alu 0 150 4 5 1662 653 236 62 171 chr5 141231187 141231199 -11306060 - B4 SINE B4 -202 90 90 5 1662 630 201 197 22 chr5 141231199 141231377 -11305882 - B3 SINE B2 -7 209 1 5 1662 653 236 62 171 chr5 141231377 141231443 -11305816 - B4 SINE B4 -202 90 17 5 1662 466 273 71 7 chr5 141231621 141231761 -11305498 - RSINE1 SINE B4 -13 152 4 5 1662 310 246 258 16 chr5 141231985 141232109 -11305150 + RSINE1 SINE B4 4 157 -8 5 1662 277 297 48 19 chr5 141232224 141232327 -11304932 - Tigger10 DNA Tigger -38 1805 1700 5 1662 312 171 42 14 chr5 141232473 141232544 -11304715 + ID4_ SINE ID 2 74 -9 5 1662 285 29 0 0 chr5 141232868 141232902 -11304357 + (TG)n Simple_repeat Simple_repeat 1 34 0 5 1662 586 264 136 44 chr5 141232907 141233157 -11304102 - B4A SINE B4 -19 273 1 5 1662 247 239 104 0 chr5 141233170 141233237 -11304022 - PB1D10 SINE Alu -7 110 37 6 1662 903 97 171 29 chr5 141233465 141233635 -11303624 - B2_Mm2 SINE B2 -1 194 1 6 1662 234 0 0 0 chr5 141233861 141233887 -11303372 + (TG)n Simple_repeat Simple_repeat 1 26 0 6 1662 360 242 0 87 chr5 141233974 141234078 -11303181 - B4 SINE B4 -193 99 5 6 1662 24 0 0 0 chr5 141234482 141234506 -11302753 + AT_rich Low_complexity Low_complexity 1 24 0 6 1662 353 202 32 11 chr5 141237565 141237660 -11299599 - ZP3AR Satellite Satellite -88 124 28 6 1662 221 214 128 23 chr5 141238064 141238150 -11299109 - PB1D10 SINE Alu 0 117 23 6 1662 1008 228 190 13 chr5 141238762 141239073 -11298186 + MTD LTR MaLR 40 405 -14 6 1662 634 286 0 0 chr5 141239096 141239243 -11298016 + B1F1 SINE Alu 3 149 0 6 1662 558 281 66 14 chr5 141239320 141239533 -11297726 + ID_B1 SINE B4 1 224 0 6 1662 529 252 18 72 chr5 141240075 141240242 -11297017 + RSINE1 SINE B4 4 161 -4 6 1662 806 258 137 16 chr5 141240507 141240755 -11296504 - B4 SINE B4 -10 282 5 6 1662 389 267 29 0 chr5 141240875 141240980 -11296279 - PB1D10 SINE Alu -9 108 1 6 1662 204 67 0 0 chr5 141241524 141241554 -11295705 + (TG)n Simple_repeat Simple_repeat 1 30 0 6 1662 612 185 89 0 chr5 141242163 141242298 -11294961 - B1_Mur2 SINE Alu -2 147 1 6 1662 309 51 0 0 chr5 141242306 141242345 -11294914 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1662 492 32 0 0 chr5 141242346 141242408 -11294851 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1662 345 259 16 136 chr5 141242766 141242810 -11294449 + B4A SINE B4 58 86 -206 6 1662 623 182 72 7 chr5 141242810 141242948 -11294311 + B1_Mus1 SINE Alu 1 147 -1 6 1662 461 248 0 10 chr5 141242973 141243075 -11294184 + PB1D10 SINE Alu 9 109 -8 6 1662 498 33 0 0 chr5 141243356 141243416 -11293843 + (GA)n Simple_repeat Simple_repeat 1 60 0 6 1662 360 0 0 0 chr5 141243540 141243580 -11293679 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1662 218 160 0 20 chr5 141244711 141244762 -11292497 + GA-rich Low_complexity Low_complexity 2 51 0 6 1662 325 214 43 0 chr5 141244794 141244864 -11292395 + PB1D10 SINE Alu 44 116 -1 6 1662 324 200 187 11 chr5 141245188 141245279 -11291980 + PB1D10 SINE Alu 2 108 -9 6 1662 735 217 7 0 chr5 141245755 141245898 -11291361 + B3A SINE B2 28 171 -27 6 1662 401 208 52 10 chr5 141246229 141246326 -11290933 + PB1D7 SINE Alu 12 112 -8 6 1662 233 261 62 0 chr5 141246341 141246406 -11290853 + ID4_ SINE ID 2 70 -13 6 1662 516 206 169 7 chr5 141246599 141246741 -11290518 + B4A SINE B4 65 229 -63 6 1662 715 250 14 33 chr5 141246746 141246957 -11290302 + B3 SINE B2 10 216 0 6 1662 554 218 120 0 chr5 141246982 141247115 -11290144 + B1_Mur1 SINE Alu 1 149 0 6 1662 454 234 107 40 chr5 141247215 141247451 -11289808 + L1MB8 LINE L1 5879 6130 -50 6 1662 286 242 0 0 chr5 141247925 141247987 -11289272 - B3A SINE B2 -136 62 1 6 1662 225 310 25 25 chr5 141248036 141248155 -11289104 + PB1D7 SINE Alu 1 119 -1 6 1662 342 67 0 0 chr5 141248157 141248202 -11289057 + (GGGA)n Simple_repeat Simple_repeat 2 46 0 6 1662 203 310 17 0 chr5 141248344 141248402 -11288857 + GA-rich Low_complexity Low_complexity 3 61 0 6 1662 1346 79 17 0 chr5 141248864 141249042 -11288217 - B2_Mm2 SINE B2 -14 181 1 6 1662 27 0 0 0 chr5 141250092 141250119 -11287140 + AT_rich Low_complexity Low_complexity 1 27 0 6 1662 676 214 128 23 chr5 141250127 141250299 -11286960 - B3 SINE B2 -4 212 23 6 1662 376 170 39 14 chr5 141250383 141250464 -11286795 - B1F SINE Alu -50 97 17 6 1662 305 261 25 32 chr5 141250665 141250759 -11286500 + PB1D10 SINE Alu 8 111 -9 6 1662 502 270 131 10 chr5 141251373 141251571 -11285688 + B4 SINE B4 8 229 -63 6 1662 474 275 29 7 chr5 141251568 141251707 -11285552 + RSINE1 SINE B4 8 149 -16 6 1662 459 323 38 0 chr5 141252635 141252793 -11284466 + RSINE1 SINE B4 2 165 0 6 1662 249 382 0 0 chr5 141252822 141252898 -11284361 + AluF_3 SINE Alu 137 212 -99 6 1662 532 174 26 17 chr5 141253403 141253520 -11283739 + PB1D9 SINE Alu 2 119 -1 6 1662 300 53 0 0 chr5 141253627 141253665 -11283594 + (CGTG)n Simple_repeat Simple_repeat 1 38 0 6 1662 362 205 212 8 chr5 141253912 141254030 -11283229 + ID_B1 SINE B4 16 157 -67 6 1662 237 239 141 0 chr5 141253971 141254042 -11283217 + PB1D10 SINE Alu 9 89 -28 6 1662 405 0 0 0 chr5 141254052 141254097 -11283162 + (CAA)n Simple_repeat Simple_repeat 1 45 0 6 1662 556 297 0 0 chr5 141254685 141254823 -11282436 - ID_B1 SINE B4 -2 222 85 6 1662 301 323 115 0 chr5 141254852 141254948 -11282311 + PB1D10 SINE Alu 3 109 -8 6 1662 190 106 0 41 chr5 141254949 141254998 -11282261 + (GGGAGA)n Simple_repeat Simple_repeat 5 51 0 6 1662 221 189 189 0 chr5 141255444 141255497 -11281762 - ID2 SINE ID -9 74 12 6 1662 251 218 18 0 chr5 141255556 141255611 -11281648 - MurSatRep1 Unknown Unknown -1855 282 227 6 1662 347 286 84 26 chr5 141255724 141255914 -11281345 + L1M4 LINE L1 4692 4892 -1254 6 1662 554 129 43 0 chr5 141256356 141256449 -11280810 + PB1D9 SINE Alu 24 120 0 6 1662 230 345 111 35 chr5 141256810 141256847 -11280412 - B2_Mm1t SINE B2 -8 185 2 6 1662 566 241 67 8 chr5 141256847 141256981 -11280278 - RSINE1 SINE B4 -21 144 3 6 1662 441 235 0 30 chr5 141257369 141257470 -11279789 - RSINE1 SINE B4 0 165 68 6 1662 222 296 14 0 chr5 141257668 141257739 -11279520 - RSINE1 SINE B4 -42 123 52 6 1662 221 250 92 15 chr5 141259053 141259118 -11278141 + PB1D7 SINE Alu 41 110 -10 6 1662 683 284 55 13 chr5 141259186 141259421 -11277838 + B4A SINE B4 2 246 -46 6 1662 234 280 86 0 chr5 141259538 141259637 -11277622 + L1MC4 LINE L1 7387 7480 -562 6 1662 437 305 91 45 chr5 141259651 141259850 -11277409 - B3 SINE B2 -6 210 3 6 1662 329 127 4 21 chr5 141259867 141259940 -11277319 - B1_Mus2 SINE Alu 0 147 79 6 1662 361 328 135 22 chr5 141260208 141260622 -11276637 + L1ME3B LINE L1 5509 5969 -271 6 1662 268 229 0 54 chr5 141261230 141261304 -11275955 - PB1D10 SINE Alu -26 91 22 6 1662 675 264 81 6 chr5 141261699 141262035 -11275224 + MTD LTR MaLR 27 419 0 6 1662 541 257 197 5 chr5 141262770 141262993 -11274266 - B4A SINE B4 -18 274 9 6 1662 183 42 0 0 chr5 141262995 141263019 -11274240 + (ACTG)n Simple_repeat Simple_repeat 2 25 0 6 1662 278 200 33 0 chr5 141263022 141263082 -11274177 - ID_B1 SINE B4 -71 153 92 6 1662 284 236 0 0 chr5 141263428 141263500 -11273759 + L1MD LINE L1 5213 5284 -862 6 1662 596 217 35 0 chr5 141263512 141263627 -11273632 + RSINE1 SINE B4 11 129 -36 6 1662 1159 48 7 0 chr5 141263713 141263859 -11273400 + B1_Mus1 SINE Alu 2 148 0 6 1662 342 263 398 5 chr5 141264050 141264235 -11273024 + L1MD LINE L1 5568 5824 -535 6 1662 307 303 0 0 chr5 141264244 141264320 -11272939 + ID4_ SINE ID 8 83 0 6 1662 324 233 133 15 chr5 141264580 141264715 -11272544 + L1MC4a LINE L1 7723 7873 -9 6 1662 401 270 20 0 chr5 141265280 141265380 -11271879 - PB1D9 SINE Alu 0 120 19 6 1662 262 214 31 125 chr5 141265445 141265541 -11271718 + MT2B2 LTR ERVL 155 241 -343 6 1662 362 269 45 18 chr5 141265466 141265576 -11271683 + PB1D10 SINE Alu 5 117 0 6 1662 573 224 0 0 chr5 141265742 141265849 -11271410 + RSINE1 SINE B4 38 144 -21 6 1662 439 238 10 29 chr5 141266001 141266105 -11271154 + PB1D10 SINE Alu 9 110 -7 6 1662 869 130 13 27 chr5 141266191 141266341 -11270918 + B1_Mus1 SINE Alu 1 148 0 6 1662 372 43 0 0 chr5 141266429 141266475 -11270784 + (GA)n Simple_repeat Simple_repeat 1 46 0 6 1662 28 0 0 0 chr5 141267832 141267860 -11269399 + AT_rich Low_complexity Low_complexity 1 28 0 6 1662 271 279 172 9 chr5 141267878 141268000 -11269259 + ID_B1 SINE B4 86 210 -82 6 1662 509 236 53 38 chr5 141268931 141269063 -11268196 + B3A SINE B2 4 137 -61 6 1662 513 47 0 0 chr5 141269078 141269142 -11268117 + (CA)n Simple_repeat Simple_repeat 2 65 0 6 1662 227 259 0 0 chr5 141269156 141269214 -11268045 + RSINE1 SINE B4 8 65 -100 6 1662 256 225 212 0 chr5 141270293 141270373 -11266886 + PB1D10 SINE Alu 10 106 -11 6 1662 225 0 0 0 chr5 141271658 141271683 -11265576 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6 1662 1180 41 7 0 chr5 141271729 141271874 -11265385 - B1_Mus1 SINE Alu 0 148 3 6 1662 1327 82 0 49 chr5 141271905 141272110 -11265149 + B2_Mm2 SINE B2 1 195 0 6 1662 571 311 96 22 chr5 141272416 141272686 -11264573 - MLT1A0 LTR MaLR -8 357 68 6 1662 480 177 104 0 chr5 141272677 141272773 -11264486 - B1F2 SINE Alu -20 129 24 6 1662 564 196 234 18 chr5 141272789 141272960 -11264299 - B3 SINE B2 -6 210 3 6 1662 754 248 75 14 chr5 141272964 141273177 -11264082 - B4A SINE B4 -66 226 1 6 1662 596 251 109 1 chr5 141274009 141274261 -11262998 + MLT2B1 LTR ERVL 266 562 -5 6 1662 394 232 81 0 chr5 141274435 141274534 -11262725 + PB1D7 SINE Alu 6 112 -8 6 1662 205 182 0 0 chr5 141274692 141274725 -11262534 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1662 251 266 0 15 chr5 141275595 141275660 -11261599 - RLTR15 LTR ERVK -295 64 1 7 1662 393 254 133 17 chr5 141275777 141275897 -11261362 + B4A SINE B4 159 292 0 7 1662 393 22 0 0 chr5 141275934 141275980 -11261279 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1662 434 230 103 39 chr5 141276007 141276190 -11261069 + B4 SINE B4 29 259 -33 7 1662 378 0 0 0 chr5 141276190 141276232 -11261027 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1662 344 284 12 0 chr5 141276240 141276321 -11260938 + ID4_ SINE ID 2 83 0 7 1662 635 306 132 32 chr5 141277296 141277607 -11259652 + MER74A LTR ERVL 20 361 -197 7 1662 501 62 0 0 chr5 141278161 141278226 -11259033 + (CA)n Simple_repeat Simple_repeat 2 66 0 7 1662 985 244 27 78 chr5 141278650 141278943 -11258316 - B4A SINE B4 -10 282 5 7 1662 578 227 102 0 chr5 141278965 141279093 -11258166 - B1F SINE Alu -1 148 8 7 1662 295 275 21 42 chr5 141279015 141279110 -11258149 - B4A SINE B4 -120 172 80 7 1662 743 256 55 11 chr5 141279388 141279413 -11257846 - B3A SINE B2 -7 191 167 7 1662 291 114 0 0 chr5 141279413 141279457 -11257802 + (TATG)n Simple_repeat Simple_repeat 2 45 0 7 1662 882 193 41 1 chr5 141279457 141279613 -11257646 - B3 SINE B2 -32 166 2 7 1662 345 322 0 17 chr5 141279623 141279740 -11257519 - PB1D10 SINE Alu 0 117 3 7 1662 364 286 103 7 chr5 141279740 141279895 -11257364 + L2a LINE L2 3257 3426 0 7 1662 771 282 148 28 chr5 141280363 141280913 -11256346 + L1_Rod LINE L1 5091 5785 -95 7 1662 541 281 8 16 chr5 141280917 141281040 -11256219 + B4 SINE B4 2 123 -169 7 1662 324 257 27 0 chr5 141281067 141281141 -11256118 - HAL1-3A_ME LINE L1 -809 2049 1974 7 1662 260 250 31 0 chr5 141281169 141281233 -11256026 + B4A SINE B4 192 257 -35 7 1662 218 105 26 0 chr5 141281274 141281312 -11255947 + (CATA)n Simple_repeat Simple_repeat 3 41 0 7 1662 322 307 33 43 chr5 141281511 141281603 -11255656 + B1F SINE Alu 1 91 -58 7 1662 301 253 12 62 chr5 141281631 141281711 -11255548 + ID4 SINE ID 5 80 -3 7 1662 379 189 122 0 chr5 141282617 141282707 -11254552 - L2b LINE L2 0 3375 3275 7 1662 198 71 0 0 chr5 141282998 141283026 -11254233 + (T)n Simple_repeat Simple_repeat 1 28 0 7 1662 339 151 19 0 chr5 141283129 141283182 -11254077 - ID_B1 SINE B4 -83 141 88 7 1662 609 251 142 12 chr5 141283811 141283980 -11253279 - B3A SINE B2 -7 191 1 7 1662 548 210 71 14 chr5 141284352 141284492 -11252767 + B1F1 SINE Alu 2 149 0 7 1662 591 212 0 0 chr5 141284734 141284833 -11252426 - B3A SINE B2 -99 99 1 7 1662 497 228 335 5 chr5 141284878 141285072 -11252187 + B4A SINE B4 1 258 -34 7 1662 474 101 0 0 chr5 141285168 141285237 -11252022 + (CA)n Simple_repeat Simple_repeat 1 69 0 7 1662 452 262 28 0 chr5 141285679 141285786 -11251473 - PB1D10 SINE Alu -7 110 1 7 1662 321 303 29 57 chr5 141285967 141286107 -11251152 + MER5A1 DNA MER1_type 31 166 0 7 1662 226 326 116 41 chr5 141286368 141286515 -11250744 - LTR33 LTR ERVL -334 181 24 7 1662 501 289 45 25 chr5 141286704 141286906 -11250353 + B4A SINE B4 2 207 -85 7 1662 209 139 0 44 chr5 141287039 141287084 -11250175 + GA-rich Low_complexity Low_complexity 4 46 0 7 1662 373 219 24 13 chr5 141287522 141287618 -11249641 + ID4_ SINE ID 9 114 -38 7 1662 373 258 174 67 chr5 141287618 141287888 -11249371 + L1MB7 LINE L1 5347 5645 -533 7 1662 458 233 160 35 chr5 141288130 141288299 -11248960 + L1MB7 LINE L1 5643 5832 -352 7 1662 440 248 8 8 chr5 141288373 141288491 -11248768 + L1MD LINE L1 5436 5553 -2442 7 1662 270 256 13 13 chr5 141288522 141288601 -11248658 + L1MD LINE L1 5670 5748 -2247 7 1662 425 253 293 13 chr5 141288751 141288983 -11248276 + L1MC2 LINE L1 5952 6248 -96 7 1662 509 262 102 45 chr5 141289855 141290031 -11247228 + B3A SINE B2 5 190 -8 7 1662 440 225 0 12 chr5 141290080 141290161 -11247098 + B4A SINE B4 2 81 -211 7 1662 1870 164 15 39 chr5 141290219 141290626 -11246633 + RMER17C LTR ERVK 1 397 -13 7 1662 880 97 16 0 chr5 141290614 141290738 -11246521 - B1_Mus1 SINE Alu 0 148 23 7 1662 295 258 11 33 chr5 141291528 141291620 -11245639 + MARNA DNA Mariner 471 560 -26 7 1662 340 155 139 23 chr5 141291761 141291847 -11245412 - PB1D9 SINE Alu 0 120 25 7 1662 510 243 65 0 chr5 141291846 141291953 -11245306 - ID_B1 SINE B4 -17 207 94 7 1662 228 35 0 0 chr5 141292032 141292061 -11245198 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7 1662 801 273 136 8 chr5 141292209 141292460 -11244799 - B4 SINE B4 -8 284 2 7 1662 396 219 0 0 chr5 141292497 141292561 -11244698 - PB1D10 SINE Alu -35 82 19 7 1662 629 237 209 0 chr5 141293661 141293838 -11243421 - B3 SINE B2 -1 215 2 7 1662 460 333 0 24 chr5 141294041 141294164 -11243095 - RSINE1 SINE B4 -2 163 44 7 1662 354 297 133 0 chr5 141294163 141294291 -11242968 - B1_Mur4 SINE Alu 0 150 6 7 1662 681 319 91 4 chr5 141295066 141295296 -11241963 - B4A SINE B4 -1 291 42 7 1663 608 261 43 22 chr5 141295852 141296036 -11241223 - B3A SINE B2 -9 189 2 7 1663 570 289 16 1 chr5 141296961 141297136 -11240123 + L1MDa LINE L1 1548 1769 -4864 7 1663 291 305 53 116 chr5 141297165 141297354 -11239905 + MT2B LTR ERVL 89 265 -336 7 1663 763 262 12 0 chr5 141297214 141297374 -11239885 + ID_B1 SINE B4 53 214 -10 7 1663 627 269 31 6 chr5 141297438 141297508 -11239751 + ID SINE ID 7 80 -144 7 1663 449 250 0 20 chr5 141297508 141297610 -11239649 + PB1D10 SINE Alu 1 100 -17 7 1663 231 114 0 0 chr5 141297705 141297740 -11239519 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1663 243 310 79 10 chr5 141297860 141297961 -11239298 + Tigger5 DNA MER2_type 2 109 -2297 7 1663 453 278 90 75 chr5 141297961 141298368 -11238891 + L1MDa LINE L1 2846 3258 -3279 7 1663 371 196 29 193 chr5 141298499 141298670 -11238589 + B4 SINE B4 2 144 -148 7 1663 342 216 146 10 chr5 141298678 141298781 -11238478 + ID_B1 SINE B4 108 224 0 7 1663 248 196 22 0 chr5 141298788 141298834 -11238425 + B1_Mus1 SINE Alu 1 47 -101 7 1663 460 275 9 142 chr5 141298856 141298922 -11238337 + L1MDa LINE L1 3476 3531 -3006 7 1663 389 204 31 110 chr5 141298922 141299049 -11238210 + PB1D7 SINE Alu 3 119 -1 7 1663 460 275 9 142 chr5 141299049 141299194 -11238065 + L1MDa LINE L1 3532 3659 -2878 7 1663 221 354 0 12 chr5 141299195 141299275 -11237984 + ID4 SINE ID 5 83 0 7 1663 665 253 88 36 chr5 141299316 141299509 -11237750 + B4 SINE B4 6 208 -84 7 1663 384 211 0 0 chr5 141299627 141299703 -11237556 + L1MD LINE L1 4097 4172 -1974 7 1663 1895 53 8 8 chr5 141299715 141299963 -11237296 + L1_Mus3 LINE L1 6391 6638 0 7 1663 321 93 0 0 chr5 141300083 141300137 -11237122 + (CA)n Simple_repeat Simple_repeat 2 55 0 7 1663 722 279 105 38 chr5 141300193 141300640 -11236619 + L1MD LINE L1 4179 4655 -1491 7 1663 706 251 48 24 chr5 141300640 141300836 -11236423 + B3A SINE B2 1 194 -1 7 1663 1225 267 179 11 chr5 141300836 141301719 -11235540 + L1MD LINE L1 4660 5689 -553 7 1663 593 254 25 0 chr5 141301723 141301845 -11235414 + ID_B1 SINE B4 86 210 -14 7 1663 268 299 26 53 chr5 141301741 141301893 -11235366 - YREP_Mm Unknown Unknown -1518 294 147 7 1663 293 231 0 0 chr5 141301896 141301961 -11235298 + L1_Mus4 LINE L1 5671 5735 -901 7 1663 227 311 54 32 chr5 141302078 141302171 -11235088 - B3 SINE B2 -9 207 113 7 1663 849 281 89 12 chr5 141302122 141302381 -11234878 - B4A SINE B4 0 292 14 7 1663 30 27 0 0 chr5 141302667 141302704 -11234555 + AT_rich Low_complexity Low_complexity 1 37 0 7 1663 1194 172 231 5 chr5 141303004 141303550 -11233709 + L1_Mur3 LINE L1 882 1610 -4267 7 1663 433 249 106 50 chr5 141304366 141304565 -11232694 - ID_B1 SINE B4 -10 214 5 7 1663 242 299 13 13 chr5 141304820 141304898 -11232361 - ID2 SINE ID -3 80 3 7 1663 329 299 59 79 chr5 141304921 141305175 -11232084 + L1MC5 LINE L1 7660 7908 -53 7 1663 645 195 58 4 chr5 141305192 141305333 -11231926 + ID_B1 SINE B4 81 223 -1 7 1663 828 263 15 58 chr5 141305335 141305541 -11231718 + ID_B1 SINE B4 5 201 -23 7 1663 35 88 0 0 chr5 141306261 141306352 -11230907 + GC_rich Low_complexity Low_complexity 1 91 0 7 1663 548 303 134 38 chr5 141307051 141307312 -11229947 + B4A SINE B4 7 292 0 7 1663 315 269 0 0 chr5 141307449 141307516 -11229743 + B1F SINE Alu 48 114 -35 7 1663 361 217 71 24 chr5 141307555 141307640 -11229619 + PB1D7 SINE Alu 24 112 -8 7 1663 637 307 80 20 chr5 141307691 141307940 -11229319 - B4 SINE B4 -27 265 2 7 1663 406 257 89 0 chr5 141307945 141308046 -11229213 - ID_B1 SINE B4 0 224 115 7 1663 676 287 37 28 chr5 141308156 141308371 -11228888 + Tigger12A DNA MER2_type 572 788 -3 7 1663 388 250 9 55 chr5 141308419 141308529 -11228730 - MIRc SINE MIR -5 263 159 7 1663 615 246 67 57 chr5 141308552 141308686 -11228573 + B4A SINE B4 2 143 -149 7 1663 387 0 0 0 chr5 141308686 141308729 -11228530 + (GA)n Simple_repeat Simple_repeat 2 44 0 7 1663 615 246 67 57 chr5 141308729 141308788 -11228471 + B4A SINE B4 144 197 -95 7 1663 1357 217 127 16 chr5 141308793 141309143 -11228116 - MTD LTR MaLR -4 415 2 7 1663 302 267 28 56 chr5 141309424 141309531 -11227728 + MIRc SINE MIR 54 157 -111 7 1663 1018 227 54 5 chr5 141309539 141309743 -11227516 + B3 SINE B2 1 214 -2 7 1663 302 368 0 0 chr5 141309750 141309826 -11227433 + B3A SINE B2 27 102 -96 7 1663 729 235 0 0 chr5 141309836 141310015 -11227244 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1663 711 237 0 0 chr5 141310026 141310203 -11227056 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 7 1663 210 222 0 0 chr5 141310203 141310239 -11227020 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1663 584 213 23 17 chr5 141310240 141310417 -11226842 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 7 1663 533 268 27 68 chr5 141310510 141310658 -11226601 + B4A SINE B4 4 145 -147 8 1663 546 204 12 36 chr5 141310685 141310853 -11226406 + (ATGGTG)n Simple_repeat Simple_repeat 6 169 0 8 1663 384 326 10 61 chr5 141310853 141311049 -11226210 - HAL1-2a_MD LINE L1 -508 2516 2331 8 1663 1280 197 63 72 chr5 141311414 141311781 -11225478 + RLTR20C LTR ERVK 1 446 -105 8 1663 216 0 0 0 chr5 141311781 141311805 -11225454 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1663 529 216 118 26 chr5 141311805 141311890 -11225369 + RLTR20C LTR ERVK 447 542 -9 8 1663 1520 177 110 7 chr5 141311905 141312195 -11225064 - ORR1B2 LTR MaLR -46 321 2 8 1663 1118 231 184 0 chr5 141312448 141312747 -11224512 + ORR1E LTR MaLR 1 354 -5 8 1663 618 253 0 20 chr5 141312878 141313027 -11224232 + B1_Mur1 SINE Alu 2 147 -2 8 1663 654 195 0 0 chr5 141313180 141313484 -11223775 + (CA)n Simple_repeat Simple_repeat 1 304 0 8 1663 468 190 0 32 chr5 141313517 141313702 -11223557 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1663 516 32 0 0 chr5 141313929 141313991 -11223268 + (TC)n Simple_repeat Simple_repeat 1 62 0 8 1663 279 0 0 0 chr5 141313991 141314021 -11223238 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1663 957 271 60 90 chr5 141314030 141314470 -11222789 - L1MA4A LINE L1 -365 5938 5512 8 1663 1109 266 90 26 chr5 141314470 141314531 -11222728 - ORR1D2 LTR MaLR -4 366 308 8 1663 219 36 0 0 chr5 141314531 141314559 -11222700 + (TTG)n Simple_repeat Simple_repeat 2 29 0 8 1663 1109 266 90 26 chr5 141314559 141314841 -11222418 - ORR1D2 LTR MaLR -63 307 1 8 1663 957 287 59 53 chr5 141314841 141314874 -11222385 - L1MA4A LINE L1 -663 5511 5479 8 1663 374 336 104 7 chr5 141314978 141315113 -11222146 - MLT1A1 LTR MaLR -196 212 65 8 1663 227 343 9 29 chr5 141315279 141315384 -11221875 + B2_Mm1t SINE B2 1 103 -90 8 1663 423 244 0 7 chr5 141315432 141315587 -11221672 + (TCCA)n Simple_repeat Simple_repeat 1 153 0 8 1663 218 255 7 28 chr5 141315610 141315755 -11221504 + (TCCA)n Simple_repeat Simple_repeat 1 142 0 8 1663 2990 100 4 24 chr5 141315782 141316232 -11221027 + BGLII_B LTR ERVK 1 441 0 8 1663 1059 177 4 7 chr5 141316250 141316702 -11220557 + (TCCA)n Simple_repeat Simple_repeat 1 450 0 8 1663 209 228 0 81 chr5 141316712 141316774 -11220485 + (CCCA)n Simple_repeat Simple_repeat 2 58 0 8 1663 391 192 29 29 chr5 141316865 141316967 -11220292 + MTEa LTR MaLR 278 379 0 8 1663 1078 293 32 52 chr5 141317022 141317425 -11219834 - MLT2D LTR ERVL -8 406 12 8 1663 486 311 6 72 chr5 141317457 141317637 -11219622 + B4 SINE B4 2 169 -123 8 1663 423 56 0 0 chr5 141317716 141317770 -11219489 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1663 700 189 0 22 chr5 141318377 141318561 -11218698 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 8 1663 649 195 6 12 chr5 141318621 141318787 -11218472 + (TCCA)n Simple_repeat Simple_repeat 1 165 0 8 1663 264 200 0 0 chr5 141318809 141318864 -11218395 + (CCTA)n Simple_repeat Simple_repeat 3 57 0 8 1663 265 184 293 10 chr5 141318874 141318973 -11218286 + RMER15 LTR ERVL 4 130 -445 8 1663 1023 282 43 27 chr5 141318998 141319297 -11217962 + RMER15 LTR ERVL 272 575 0 8 1663 278 295 21 21 chr5 141319300 141319442 -11217817 + (TCCA)n Simple_repeat Simple_repeat 3 144 0 8 1663 1200 92 34 11 chr5 141319599 141319775 -11217484 + B2_Mm2 SINE B2 2 181 -14 8 1663 467 96 0 12 chr5 141319817 141319901 -11217358 + L1Md_F2 LINE L1 6500 6582 0 8 1663 212 292 0 0 chr5 141319938 141319986 -11217273 + (CCCA)n Simple_repeat Simple_repeat 2 49 0 8 1663 1106 220 115 99 chr5 141320093 141320466 -11216793 - MTE2a LTR MaLR 0 379 1 8 1663 351 0 0 0 chr5 141320771 141320810 -11216449 + (TG)n Simple_repeat Simple_repeat 1 39 0 8 1663 469 254 81 16 chr5 141320813 141320937 -11216322 - RSINE1 SINE B4 -33 132 1 8 1663 365 345 7 58 chr5 141320970 141321124 -11216135 - MIR SINE MIR -104 158 13 8 1663 209 33 33 0 chr5 141321172 141321202 -11216057 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1663 232 209 235 15 chr5 141321250 141321318 -11215941 - ID2 SINE ID 0 83 1 8 1663 1517 78 8 0 chr5 141321277 141321524 -11215735 - ZP3AR Satellite Satellite -22 249 1 8 1663 501 17 0 0 chr5 141321562 141321620 -11215639 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1663 353 252 85 71 chr5 141321941 141322082 -11215177 - ID_B1 SINE B4 -9 215 73 8 1663 341 224 0 0 chr5 141322757 141322824 -11214435 - PB1D10 SINE Alu -50 67 1 8 1663 688 267 6 12 chr5 141322859 141323022 -11214237 - RSINE1 SINE B4 0 165 4 8 1663 1297 60 0 24 chr5 141323874 141324044 -11213215 + B2_Mm2 SINE B2 2 167 -28 8 1663 315 0 0 0 chr5 141324046 141324081 -11213178 + (TAAAA)n Simple_repeat Simple_repeat 3 37 0 8 1663 387 0 0 0 chr5 141324148 141324191 -11213068 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 8 1663 366 23 0 0 chr5 141324681 141324724 -11212535 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1663 899 117 50 89 chr5 141324728 141324907 -11212352 - B2_Mm2 SINE B2 -22 173 2 8 1663 1156 209 93 19 chr5 141325105 141325363 -11211896 + B4 SINE B4 1 277 -15 8 1663 718 326 26 89 chr5 141325735 141326040 -11211219 + MT2A LTR ERVL 170 467 -66 8 1663 2501 84 44 0 chr5 141326040 141326384 -11210875 + L1_Mus3 LINE L1 6275 6633 -5 8 1663 718 326 26 89 chr5 141326384 141326459 -11210800 + MT2A LTR ERVL 468 526 -7 8 1663 589 289 25 34 chr5 141326455 141326659 -11210600 + B3 SINE B2 14 215 -1 8 1663 577 291 123 57 chr5 141326958 141327290 -11209969 - ORR1E LTR MaLR 0 359 6 8 1663 509 331 24 18 chr5 141327777 141327943 -11209316 + MER63A DNA AcHobo 4 170 -40 8 1663 241 390 55 90 chr5 141327967 141328313 -11208946 - ORR1E LTR MaLR -25 334 1 8 1663 21 0 0 0 chr5 141328317 141328338 -11208921 + GC_rich Low_complexity Low_complexity 1 21 0 8 1663 185 305 82 33 chr5 141328494 141328555 -11208704 + MIR SINE MIR 28 91 -171 8 1663 217 333 30 84 chr5 141329360 141329491 -11207768 + ID_B1 SINE B4 50 173 -51 8 1663 279 273 11 64 chr5 141329418 141329512 -11207747 + PB1D10 SINE Alu 21 109 -8 8 1663 481 176 0 76 chr5 141329581 141329673 -11207586 + RSINE1 SINE B4 2 86 -79 8 1663 480 18 0 0 chr5 141329681 141329738 -11207521 + (CA)n Simple_repeat Simple_repeat 2 58 0 8 1663 233 276 166 43 chr5 141329945 141330108 -11207151 - RMER15 LTR ERVL -15 560 378 8 1663 347 83 0 0 chr5 141331091 141331139 -11206120 + ZP3AR Satellite Satellite 48 95 -117 8 1663 328 188 16 0 chr5 141331139 141331203 -11206056 + ID4 SINE ID 1 65 -18 8 1663 913 154 18 23 chr5 141331232 141331433 -11205826 + B3 SINE B2 1 195 0 8 1663 439 273 9 9 chr5 141331461 141331572 -11205687 + PB1D7 SINE Alu 9 119 -1 8 1663 393 39 0 0 chr5 141331629 141331680 -11205579 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1663 266 132 0 19 chr5 141332537 141332591 -11204668 + (TG)n Simple_repeat Simple_repeat 2 54 0 8 1663 359 308 0 0 chr5 141332594 141332672 -11204587 - B4A SINE B4 -2 290 213 8 1663 191 229 16 0 chr5 141332678 141332739 -11204520 + (TG)n Simple_repeat Simple_repeat 1 62 0 8 1663 466 274 121 64 chr5 141332755 141333020 -11204239 - B4 SINE B4 -11 281 2 8 1663 689 288 77 27 chr5 141333021 141333242 -11204017 - B4A SINE B4 -60 232 1 8 1663 373 303 105 16 chr5 141333256 141333380 -11203879 - B1F1 SINE Alu -14 135 1 8 1663 220 297 125 0 chr5 141333640 141333652 -11203607 + B4A SINE B4 71 90 -202 8 1663 521 272 58 7 chr5 141333652 141333789 -11203470 + B1F1 SINE Alu 2 145 -4 8 1663 190 253 23 92 chr5 141333999 141334086 -11203173 + MIR3 SINE MIR 93 173 -35 8 1663 603 173 155 16 chr5 141334228 141334357 -11202902 - B1_Mur1 SINE Alu 0 149 3 8 1663 1237 180 37 5 chr5 141334761 141334979 -11202280 + URR1B DNA MER1_type 1 225 0 8 1663 784 101 8 0 chr5 141335137 141335256 -11202003 - ZP3AR Satellite Satellite -67 145 26 8 1663 195 129 0 0 chr5 141335568 141335599 -11201660 + (TATG)n Simple_repeat Simple_repeat 1 31 0 8 1663 356 270 0 74 chr5 141335674 141335782 -11201477 - RSINE1 SINE B4 -54 111 12 8 1663 681 249 36 82 chr5 141335799 141336018 -11201241 - B3 SINE B2 -1 215 7 8 1663 278 311 112 37 chr5 141336077 141336184 -11201075 + PB1D7 SINE Alu 1 115 -5 8 1663 186 71 0 0 chr5 141336631 141336659 -11200600 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 8 1663 624 152 5 38 chr5 141336659 141336843 -11200416 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 8 1663 4458 24 0 0 chr5 141336843 141337336 -11199923 + MT2_Mm LTR ERVL 1 493 0 8 1663 39317 16 14 0 chr5 141337336 141342623 -11194636 + MERVL-int LTR ERVL 1 5360 -125 8 1663 332 158 71 35 chr5 141342623 141342708 -11194551 + ORR1A3-int LTR MaLR 553 640 -1323 8 1663 297 0 0 0 chr5 141342708 141342746 -11194513 + MERVL-int LTR ERVL 5448 5485 0 8 1663 4458 24 0 0 chr5 141342746 141343239 -11194020 + MT2_Mm LTR ERVL 1 493 0 8 1663 619 35 23 0 chr5 141343239 141343325 -11193934 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 8 1663 342 242 110 10 chr5 141343327 141343427 -11193832 - PB1D10 SINE Alu -7 110 1 8 1663 772 288 65 25 chr5 141343600 141343878 -11193381 - B4A SINE B4 -2 290 2 8 1663 2206 137 73 0 chr5 141344234 141344576 -11192683 - ORR1B2 LTR MaLR 0 367 1 8 1663 726 12 0 0 chr5 141345243 141345326 -11191933 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 8 1663 332 289 0 13 chr5 141345998 141346075 -11191184 - ID4 SINE ID -6 77 2 8 1663 305 293 50 20 chr5 141346109 141346126 -11191133 - PB1D10 SINE Alu -8 109 6 8 1663 331 244 24 24 chr5 141346126 141346210 -11191049 - ID_B1 SINE B4 -54 170 87 8 1663 538 286 0 22 chr5 141346634 141346770 -11190489 + RSINE1 SINE B4 7 139 -26 8 1663 453 19 0 0 chr5 141346770 141346824 -11190435 + (CA)n Simple_repeat Simple_repeat 1 54 0 8 1663 507 256 8 0 chr5 141346875 141346992 -11190267 + B4 SINE B4 2 119 -173 8 1663 192 152 0 0 chr5 141347064 141347097 -11190162 + CT-rich Low_complexity Low_complexity 3 35 0 8 1663 790 313 87 24 chr5 141348451 141348821 -11188438 + Lx8 LINE L1 6826 7218 -255 8 1663 244 122 0 0 chr5 141349624 141349665 -11187594 - ID_B1 SINE B4 -85 139 99 8 1663 267 185 31 165 chr5 141349682 141349779 -11187480 + B1F1 SINE Alu 65 148 -1 8 1663 458 336 51 2 chr5 141349779 141349984 -11187275 - L1MB2 LINE L1 -176 6007 5796 9 1663 245 232 232 0 chr5 141349984 141350053 -11187206 - B1F2 SINE Alu -63 86 2 9 1663 349 261 45 0 chr5 141350806 141350894 -11186365 + PB1D10 SINE Alu 17 108 -9 9 1663 474 18 0 0 chr5 141350898 141350953 -11186306 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 9 1663 614 231 35 14 chr5 141350964 141351109 -11186150 + B1F2 SINE Alu 1 148 -1 9 1663 1031 186 17 11 chr5 141351109 141351288 -11185971 + B3A SINE B2 3 182 -16 9 1663 520 185 15 15 chr5 141351359 141351496 -11185763 + (TATATG)n Simple_repeat Simple_repeat 2 138 0 9 1663 231 337 68 19 chr5 141351496 141351599 -11185660 + PB1D10 SINE Alu 3 110 -7 9 1663 319 191 17 42 chr5 141351602 141351722 -11185537 + GA-rich Low_complexity Low_complexity 4 120 0 9 1663 227 133 22 0 chr5 141352042 141352087 -11185172 + CT-rich Low_complexity Low_complexity 2 47 0 9 1663 342 0 0 0 chr5 141352100 141352138 -11185121 + (CA)n Simple_repeat Simple_repeat 2 39 0 9 1663 738 202 0 0 chr5 141352836 141353014 -11184245 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 9 1663 954 223 6 0 chr5 141353028 141353360 -11183899 + (TCCA)n Simple_repeat Simple_repeat 1 334 0 9 1663 476 196 34 11 chr5 141353434 141353609 -11183650 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 9 1663 225 271 34 0 chr5 141353792 141353851 -11183408 + GA-rich Low_complexity Low_complexity 2 62 0 9 1663 654 247 33 70 chr5 141354478 141354722 -11182537 + B4 SINE B4 9 243 -49 9 1663 540 232 163 56 chr5 141354712 141354890 -11182369 + B3A SINE B2 15 211 -5 9 1663 451 322 137 18 chr5 141355007 141355285 -11181974 + RMER15 LTR ERVL 250 560 -15 9 1663 396 238 0 0 chr5 141355740 141355866 -11181393 + (TG)n Simple_repeat Simple_repeat 1 126 0 9 1663 548 261 30 73 chr5 141355903 141356068 -11181191 - B4A SINE B4 -23 269 112 9 1663 865 259 9 14 chr5 141356858 141357073 -11180186 - ID_B1 SINE B4 -7 217 4 9 1663 274 369 126 26 chr5 141357467 141357737 -11179522 + L4 LINE RTE 1709 2005 -24 9 1663 1444 44 15 1 chr5 141358874 141359319 -11177940 + ZP3AR Satellite Satellite 1 451 -2 9 1663 291 268 471 19 chr5 141360104 141360323 -11176936 - L1ME3A LINE L1 -277 5896 5579 9 1663 570 29 0 0 chr5 141362158 141362226 -11175033 + (TTC)n Simple_repeat Simple_repeat 3 70 0 9 1663 333 0 0 0 chr5 141362235 141362272 -11174987 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 9 1663 972 120 15 0 chr5 141362272 141362405 -11174854 - B1_Mur4 SINE Alu -14 136 2 9 1663 872 206 97 5 chr5 141362470 141362665 -11174594 - ID_B1 SINE B4 -9 215 3 9 1663 580 239 17 28 chr5 141362794 141362959 -11174300 - B4A SINE B4 -71 153 2 9 1663 328 312 0 0 chr5 141363250 141363330 -11173929 - PB1D10 SINE Alu -15 102 23 9 1663 489 321 43 18 chr5 141363462 141363744 -11173515 - B4A SINE B4 -2 290 2 9 1663 577 227 94 31 chr5 141364611 141364802 -11172457 - ID_B1 SINE B4 -21 203 1 9 1663 548 182 15 45 chr5 141364727 141364859 -11172400 - ZP3AR Satellite Satellite -40 172 45 9 1663 349 245 74 19 chr5 141365412 141365520 -11171739 + B1F1 SINE Alu 1 114 -35 9 1663 226 205 0 0 chr5 141367057 141367096 -11170163 + G-rich Low_complexity Low_complexity 3 41 0 9 1663 834 314 41 51 chr5 141368433 141368728 -11168531 + B4A SINE B4 1 292 0 9 1663 504 188 6 31 chr5 141369550 141369709 -11167550 + (TCCA)n Simple_repeat Simple_repeat 3 157 0 9 1663 212 222 14 0 chr5 141369743 141369815 -11167444 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 9 1663 3298 53 0 8 chr5 141369846 141370245 -11167014 + MTA_Mm LTR MaLR 1 396 0 9 1663 317 201 29 15 chr5 141370247 141370383 -11166876 + (TCCA)n Simple_repeat Simple_repeat 4 141 0 9 1663 423 0 0 0 chr5 141370429 141370476 -11166783 + (TCCC)n Simple_repeat Simple_repeat 2 48 0 9 1663 570 199 12 12 chr5 141370569 141370742 -11166517 + (TCCA)n Simple_repeat Simple_repeat 3 175 0 9 1663 410 247 23 29 chr5 141370766 141371111 -11166148 + (TCCA)n Simple_repeat Simple_repeat 1 343 0 9 1663 1696 31 0 0 chr5 141371111 141371303 -11165956 - B2_Mm1a SINE B2 0 193 2 9 1663 410 229 21 2 chr5 141371303 141371470 -11165789 + (TCCA)n Simple_repeat Simple_repeat 1 170 0 9 1663 255 273 0 0 chr5 141371487 141371553 -11165706 + (TCCA)n Simple_repeat Simple_repeat 3 68 0 9 1663 190 281 50 50 chr5 141372503 141372623 -11164636 - L2b LINE L2 -200 3175 3056 9 1663 338 70 0 34 chr5 141372834 141372893 -11164366 + (TCTCTG)n Simple_repeat Simple_repeat 3 59 0 9 1663 628 257 24 18 chr5 141372897 141373067 -11164192 - B4 SINE B4 -98 194 24 9 1663 428 245 0 39 chr5 141373439 141373541 -11163718 - RSINE1 SINE B4 -64 101 4 9 1663 911 176 2 0 chr5 141373545 141374022 -11163237 + (CA)n Simple_repeat Simple_repeat 1 478 0 9 1663 387 250 14 0 chr5 141374453 141374525 -11162734 - ID4_ SINE ID -9 74 2 9 1663 1427 115 6 3 chr5 141374526 141374944 -11162315 - ZP3AR Satellite Satellite -11 419 1 9 1663 367 286 34 24 chr5 141374955 141375107 -11162152 - B1F1 SINE Alu -2 147 1 9 1663 221 340 128 41 chr5 141375167 141375385 -11161874 - MIRb SINE MIR -27 241 1 9 1663 662 181 22 30 chr5 141375803 141376306 -11160953 + (TG)n Simple_repeat Simple_repeat 1 499 0 9 1663 736 260 154 9 chr5 141376355 141376588 -11160671 - B4A SINE B4 -24 268 2 9 1663 265 234 24 61 chr5 141377775 141377857 -11159402 - ID4_ SINE ID -4 79 1 9 1663 1520 102 11 0 chr5 141377816 141378278 -11158981 - ZP3AR Satellite Satellite -23 466 1 9 1663 227 355 40 0 chr5 141378354 141378430 -11158829 - AluG_3 SINE Alu -96 215 137 9 1663 243 88 0 0 chr5 141378438 141378472 -11158787 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 9 1663 1024 236 95 37 chr5 141378919 141379192 -11158067 + B4 SINE B4 4 292 0 9 1663 1005 171 0 0 chr5 141379235 141379526 -11157733 + (TCCA)n Simple_repeat Simple_repeat 1 291 0 9 1663 208 234 0 0 chr5 141379799 141379846 -11157413 + (CAAA)n Simple_repeat Simple_repeat 1 47 0 9 1663 1037 180 75 5 chr5 141379938 141380139 -11157120 - B3 SINE B2 0 216 2 9 1663 534 306 30 33 chr5 141380147 141380349 -11156910 - ID_B1 SINE B4 -73 219 10 9 1663 269 254 0 33 chr5 141380391 141380452 -11156807 + MIRm SINE MIR 203 261 -15 9 1663 385 307 106 14 chr5 141380452 141380660 -11156599 + L2 LINE L2 2765 2991 -428 9 1663 211 28 27 27 chr5 141380706 141380743 -11156516 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 9 1663 28 84 0 27 chr5 141380774 141380884 -11156375 + AT_rich Low_complexity Low_complexity 1 107 0 9 1663 1012 337 70 11 chr5 141380899 141381373 -11155886 - Lx8 LINE L1 -11 7462 6961 9 1663 333 270 50 75 chr5 141381401 141381521 -11155738 - PB1D10 SINE Alu 0 117 1 9 1663 557 248 0 9 chr5 141381663 141381777 -11155482 + PB1D10 SINE Alu 5 117 0 9 1663 1311 201 103 52 chr5 141382985 141383242 -11154017 + MTE2b LTR MaLR 19 293 -86 9 1663 311 0 0 25 chr5 141383242 141383282 -11153977 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1663 1311 212 96 53 chr5 141383282 141383368 -11153891 + MTE2b LTR MaLR 283 370 0 9 1663 231 375 19 9 chr5 141383443 141383548 -11153711 - PB1D10 SINE Alu -9 108 3 9 1663 430 247 6 6 chr5 141384260 141384423 -11152836 + (CA)n Simple_repeat Simple_repeat 2 164 0 9 1663 393 22 0 0 chr5 141384722 141384768 -11152491 + (TG)n Simple_repeat Simple_repeat 1 46 0 9 1663 250 149 21 0 chr5 141384841 141384888 -11152371 - MTD LTR MaLR 0 419 372 9 1663 345 289 57 61 chr5 141384925 141385106 -11152153 - B4 SINE B4 0 292 78 9 1663 771 244 122 65 chr5 141385110 141385382 -11151877 - Lx8 LINE L1 -231 7242 6954 9 1663 243 88 0 0 chr5 141385382 141385416 -11151843 + (TG)n Simple_repeat Simple_repeat 1 34 0 9 1663 771 244 122 65 chr5 141385416 141385437 -11151822 - Lx8 LINE L1 -520 6953 6933 9 1663 283 247 23 58 chr5 141385795 141385881 -11151378 + ID4 SINE ID 1 83 0 9 1663 258 32 0 0 chr5 141385911 141385942 -11151317 + (CCA)n Simple_repeat Simple_repeat 1 31 0 9 1663 1088 228 188 9 chr5 141386058 141386377 -11150882 + ORR1E LTR MaLR 1 376 -3 9 1663 239 215 36 60 chr5 141386661 141386745 -11150514 + MLT1A1 LTR MaLR 327 408 0 9 1663 507 320 7 13 chr5 141386844 141386993 -11150266 + MER117 DNA MER1_type 8 155 -42 9 1663 280 344 11 0 chr5 141387040 141387133 -11150126 - Charlie9 DNA MER1_type -4 2753 2660 9 1663 338 186 42 14 chr5 141387226 141387297 -11149962 - ID4_ SINE ID -10 73 1 9 1663 1541 66 6 2 chr5 141387297 141388083 -11149176 - ZP3AR Satellite Satellite -11 789 1 9 1663 426 104 10 20 chr5 141388138 141388236 -11149023 + (TC)n Simple_repeat Simple_repeat 2 98 0 9 1663 373 315 63 47 chr5 141388237 141388427 -11148832 - Charlie4a DNA MER1_type -286 222 30 9 1663 270 0 0 0 chr5 141388470 141388500 -11148759 + (T)n Simple_repeat Simple_repeat 1 30 0 9 1663 503 254 15 15 chr5 141388660 141388796 -11148463 + RMER15 LTR ERVL 305 440 -135 9 1663 397 378 35 11 chr5 141389665 141389839 -11147420 - L1ME3B LINE L1 -247 5993 5816 9 1663 427 91 0 5 chr5 141389848 141389913 -11147346 - B2_Mm2 SINE B2 -107 109 47 9 1663 1386 68 23 0 chr5 141389941 141390118 -11147141 - B2_Mm2 SINE B2 -14 181 1 9 1663 573 296 77 6 chr5 141390222 141390392 -11146867 - B3A SINE B2 -16 182 1 9 1663 288 0 0 0 chr5 141390545 141390577 -11146682 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1663 653 287 117 8 chr5 141390617 141390873 -11146386 - B4A SINE B4 -8 284 1 9 1663 311 269 180 29 chr5 141390873 141391039 -11146220 - L1MB8 LINE L1 -157 6021 5830 9 1663 242 263 0 17 chr5 141391042 141391100 -11146159 + C-rich Low_complexity Low_complexity 6 62 0 9 1663 588 242 152 20 chr5 141391111 141391309 -11145950 - L1MB7 LINE L1 -15 6169 5946 9 1663 1010 249 81 107 chr5 141391313 141391695 -11145564 - MTE2a LTR MaLR -7 372 1 9 1663 946 252 16 49 chr5 141391795 141392041 -11145218 + B4 SINE B4 55 292 0 1 1663 531 226 153 79 chr5 141392526 141392780 -11144479 - B4A SINE B4 -19 273 1 1 1663 541 279 64 68 chr5 141392795 141393076 -11144183 - L1MB7 LINE L1 -579 5599 5320 9 1663 792 231 19 0 chr5 141393202 141393362 -11143897 - RSINE1 SINE B4 0 165 3 1 1663 1165 156 92 5 chr5 141393439 141393645 -11143614 - URR1A DNA MER1_type 0 226 3 1 1663 1540 217 54 12 chr5 141393767 141394098 -11143161 - ORR1E LTR MaLR -12 347 3 1 1663 902 102 0 38 chr5 141394112 141394295 -11142964 + (TCC)n Simple_repeat Simple_repeat 3 178 0 1 1663 214 194 0 31 chr5 141394284 141394348 -11142911 + CT-rich Low_complexity Low_complexity 6 67 0 1 1663 555 263 79 55 chr5 141394386 141394551 -11142708 - B3 SINE B2 -27 189 21 1 1663 663 269 61 36 chr5 141394562 141394840 -11142419 - L1MB7 LINE L1 -1208 4938 4654 9 1663 1070 246 18 0 chr5 141394865 141395089 -11142170 - B4A SINE B4 0 292 65 1 1663 233 233 16 16 chr5 141395362 141395423 -11141836 + CT-rich Low_complexity Low_complexity 2 62 0 1 1663 395 269 24 15 chr5 141395583 141395767 -11141492 - L1MB7 LINE L1 -1697 4449 4252 9 1663 341 224 127 27 chr5 141395885 141395995 -11141264 - L1MB7 LINE L1 -1861 4285 4165 9 1663 261 139 0 0 chr5 141395995 141396038 -11141221 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1663 341 211 53 0 chr5 141396055 141396131 -11141128 - ID2 SINE ID -3 80 1 1 1663 571 190 164 21 chr5 141396131 141396271 -11140988 - ZP3AR Satellite Satellite -11 201 42 1 1663 1081 289 98 90 chr5 141396277 141396410 -11140849 - L1MB7 LINE L1 -1980 4166 4030 9 1663 201 74 0 0 chr5 141396410 141396437 -11140822 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 1663 1081 289 98 90 chr5 141396437 141396691 -11140568 - L1MB7 LINE L1 -2117 4029 3784 9 1663 405 0 0 0 chr5 141396691 141396736 -11140523 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1663 1081 289 98 90 chr5 141396736 141397016 -11140243 - L1MB7 LINE L1 -2363 3783 3499 9 1663 941 254 15 114 chr5 141397016 141397134 -11140125 - B4 SINE B4 0 292 190 1 1663 1211 68 0 0 chr5 141397134 141397281 -11139978 - B1_Mus1 SINE Alu 0 148 2 1 1663 941 254 15 114 chr5 141397281 141397486 -11139773 - B4 SINE B4 -103 189 1 1 1663 1081 289 98 90 chr5 141397486 141397740 -11139519 - L1MB7 LINE L1 -2648 3498 3235 9 1663 726 210 179 22 chr5 141397762 141397989 -11139270 + B4A SINE B4 2 262 -30 1 1663 333 0 0 0 chr5 141398016 141398053 -11139206 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1663 339 326 86 0 chr5 141398144 141398331 -11138928 - L1MB7 LINE L1 -3098 3048 2846 9 1663 303 213 0 0 chr5 141398518 141398593 -11138666 + (TG)n Simple_repeat Simple_repeat 2 76 0 1 1663 211 318 11 0 chr5 141399070 141399158 -11138101 + (TATG)n Simple_repeat Simple_repeat 2 90 0 1 1663 341 115 92 33 chr5 141399200 141399353 -11137906 + (TA)n Simple_repeat Simple_repeat 2 163 0 1 1663 225 326 43 43 chr5 141399357 141399450 -11137809 - B1_Mus2 SINE Alu -54 93 1 1 1663 404 298 135 0 chr5 141399450 141399515 -11137744 - B4A SINE B4 -204 88 5 1 1663 1113 226 83 128 chr5 141399639 141399695 -11137564 + MTE2a LTR MaLR 1 54 -325 1 1663 1332 84 15 20 chr5 141399695 141399890 -11137369 - B2_Mm2 SINE B2 0 195 2 1 1663 1113 226 83 128 chr5 141399890 141400230 -11137029 + MTE2a LTR MaLR 55 379 0 1 1663 359 333 28 7 chr5 141400856 141401001 -11136258 + B1F SINE Alu 1 148 -1 1 1663 1625 46 5 0 chr5 141401007 141401464 -11135795 + ZP3AR Satellite Satellite 1 459 -1 1 1663 265 274 0 88 chr5 141401435 141401515 -11135744 + tRNA-Ala-GCY_ tRNA tRNA 2 74 -1 1 1663 222 143 0 0 chr5 141402132 141402181 -11135078 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1663 847 156 30 0 chr5 141402222 141402357 -11134902 - B1_Mus1 SINE Alu -6 142 4 1 1663 510 206 46 9 chr5 141402460 141402568 -11134691 + PB1D7 SINE Alu 1 112 -8 1 1663 854 247 130 12 chr5 141402577 141402831 -11134428 + B4 SINE B4 1 284 -8 1 1663 342 0 0 0 chr5 141402834 141402872 -11134387 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1663 1000 125 14 0 chr5 141402902 141403046 -11134213 + B1_Mus1 SINE Alu 1 146 -2 1 1663 453 36 0 0 chr5 141403105 141403160 -11134099 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1663 1035 242 196 0 chr5 141403321 141403627 -11133632 + MTE2b LTR MaLR 1 366 -13 1 1663 248 257 12 146 chr5 141404888 141404970 -11132289 - B4 SINE B4 0 292 222 1 1663 703 314 58 73 chr5 141405521 141405902 -11131357 + MTEb LTR MaLR 1 375 -4 1 1663 293 287 10 41 chr5 141406361 141406459 -11130800 + ID_B1 SINE B4 82 176 -48 1 1663 452 232 10 39 chr5 141406374 141406477 -11130782 + PB1D10 SINE Alu 13 112 -5 1 1663 901 179 54 11 chr5 141406509 141406695 -11130564 + B2_Mm2 SINE B2 2 195 0 1 1663 283 363 95 24 chr5 141406801 141407137 -11130122 + HAL1 LINE L1 1260 1619 -888 1 1663 1079 56 7 0 chr5 141407178 141407321 -11129938 + (TC)n Simple_repeat Simple_repeat 2 145 0 1 1663 987 138 7 0 chr5 141407321 141407466 -11129793 - B1_Mur4 SINE Alu -4 146 1 1 1663 276 278 139 0 chr5 141407536 141407644 -11129615 + HAL1 LINE L1 1634 1756 -751 1 1663 353 304 78 95 chr5 141407731 141408015 -11129244 + HAL1 LINE L1 1946 2224 -283 1 1663 540 0 0 0 chr5 141408507 141408567 -11128692 + (TC)n Simple_repeat Simple_repeat 2 61 0 1 1663 204 40 0 0 chr5 141408567 141408591 -11128668 + (TG)n Simple_repeat Simple_repeat 2 26 0 1 1663 725 242 27 7 chr5 141408601 141408751 -11128508 - B3A SINE B2 -43 155 3 1 1663 379 264 59 53 chr5 141409366 141409518 -11127741 + MLT1J LTR MaLR 2 154 -358 1 1663 497 80 13 0 chr5 141409623 141409698 -11127561 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 1 1663 327 318 35 0 chr5 141409707 141409792 -11127467 - B1F1 SINE Alu -61 88 1 1 1663 1182 61 0 7 chr5 141410152 141410163 -11127096 - B1_Mus1 SINE Alu 0 148 138 1 1663 198 0 0 0 chr5 141410163 141410185 -11127074 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1 1663 1182 61 0 7 chr5 141410185 141410321 -11126938 - B1_Mus1 SINE Alu -11 137 2 1 1663 729 243 18 12 chr5 141410369 141410540 -11126719 - MTEa LTR MaLR -18 361 190 1 1663 1147 102 27 5 chr5 141410540 141410728 -11126531 + L1_Mus4 LINE L1 6445 6636 0 1 1663 576 287 113 46 chr5 141410728 141410863 -11126396 - MTEa LTR MaLR -198 161 2 1 1663 427 291 80 0 chr5 141411472 141411625 -11125634 - MTE2b LTR MaLR -73 306 141 1 1663 1253 212 5 0 chr5 141412293 141412515 -11124744 + ID_B1 SINE B4 2 224 0 1 1663 252 0 0 0 chr5 141412594 141412622 -11124637 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 1 1663 722 221 8 25 chr5 141413020 141413387 -11123872 + (TTCA)n Simple_repeat Simple_repeat 1 360 0 1 1663 521 296 14 7 chr5 141413956 141414102 -11123157 - B1F SINE Alu -2 147 1 1 1663 252 0 0 0 chr5 141414254 141414282 -11122977 + (TCTG)n Simple_repeat Simple_repeat 2 29 0 1 1663 243 203 0 0 chr5 141414288 141414357 -11122902 + CT-rich Low_complexity Low_complexity 1 69 0 1 1663 317 274 222 0 chr5 141414377 141414494 -11122765 - ID_B1 SINE B4 -80 144 2 1 1663 412 128 13 13 chr5 141415738 141415817 -11121442 + CT-rich Low_complexity Low_complexity 3 81 0 1 1663 888 172 0 13 chr5 141415841 141416071 -11121188 + CT-rich Low_complexity Low_complexity 1 227 0 1 1663 255 296 62 0 chr5 141416107 141416188 -11121071 - ZP3AR Satellite Satellite -101 111 26 1 1663 282 227 15 0 chr5 141417500 141417566 -11119693 + L1MB5 LINE L1 5795 5861 -317 1 1663 483 63 0 0 chr5 141417764 141417827 -11119432 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1663 967 242 36 16 chr5 141417834 141418082 -11119177 - B4A SINE B4 -12 280 28 1 1663 282 274 70 23 chr5 141418084 141418170 -11119089 + MTE2a LTR MaLR 1 90 -289 1 1663 323 286 121 45 chr5 141418145 141418277 -11118982 + RSINE1 SINE B4 14 155 -10 1 1663 21 0 0 0 chr5 141418289 141418310 -11118949 + AT_rich Low_complexity Low_complexity 1 21 0 1 1663 1198 274 30 20 chr5 141418462 141418760 -11118499 + MTE2a LTR MaLR 78 378 -1 1 1663 677 299 21 0 chr5 141418785 141418972 -11118287 + MER2 DNA MER2_type 108 298 -47 1 1663 254 209 67 34 chr5 141419003 141419092 -11118167 + L1MB5 LINE L1 5974 6065 -109 1 1663 971 213 104 0 chr5 141419096 141419298 -11117961 + B4A SINE B4 5 227 -65 1 1663 516 366 0 0 chr5 141419300 141419442 -11117817 + RSINE1 SINE B4 3 144 -21 1 1663 183 80 0 0 chr5 141419457 141419482 -11117777 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 1 1663 297 277 1 0 chr5 141419482 141419548 -11117711 + B4A SINE B4 215 284 -8 1 1663 438 20 0 0 chr5 141419552 141419603 -11117656 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1663 306 50 0 0 chr5 141419850 141419890 -11117369 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1663 450 264 120 114 chr5 141419896 141420071 -11117188 + B3A SINE B2 1 176 -19 1 1663 239 260 0 0 chr5 141420427 141420477 -11116782 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1663 186 118 0 0 chr5 141420655 141420689 -11116570 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 1 1663 303 28 0 0 chr5 141420866 141420902 -11116357 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 1 1663 831 138 8 0 chr5 141421101 141421224 -11116035 + B1_Mur1 SINE Alu 3 126 -23 1 1663 570 86 0 0 chr5 141421226 141421307 -11115952 + (GA)n Simple_repeat Simple_repeat 2 82 0 1 1663 261 193 0 50 chr5 141421726 141421740 -11115519 + polypyrimidine Low_complexity Low_complexity 44 57 0 1 1663 974 146 0 6 chr5 141421740 141421912 -11115347 + CT-rich Low_complexity Low_complexity 3 173 0 1 1663 261 193 0 50 chr5 141421912 141421957 -11115302 + polypyrimidine Low_complexity Low_complexity 1 43 0 1 1663 730 276 65 25 chr5 141421958 141422233 -11115026 - B4A SINE B4 -6 286 1 1 1663 413 216 98 9 chr5 141422245 141422357 -11114902 - B1F SINE Alu -4 145 24 1 1663 855 174 0 0 chr5 141422566 141422744 -11114515 + (TG)n Simple_repeat Simple_repeat 2 179 0 1 1663 660 278 122 41 chr5 141422745 141422771 -11114488 - B4 SINE B4 0 292 271 1 1663 221 57 29 0 chr5 141422771 141422806 -11114453 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1663 660 278 122 41 chr5 141422806 141423049 -11114210 - B4 SINE B4 -22 270 1 1 1663 310 207 108 12 chr5 141423703 141423786 -11113473 + PB1D10 SINE Alu 19 109 -8 1 1663 333 212 0 91 chr5 141423792 141423880 -11113379 + ID4 SINE ID 2 81 -2 1 1663 381 267 32 65 chr5 141424288 141424412 -11112847 + PB1D7 SINE Alu 1 120 0 1 1663 319 289 8 109 chr5 141424414 141424542 -11112717 + B4A SINE B4 85 199 -93 1 1663 516 250 47 13 chr5 141424546 141424696 -11112563 + RSINE1 SINE B4 3 157 -8 1 1663 598 115 6 56 chr5 141424709 141425053 -11112206 + (CA)n Simple_repeat Simple_repeat 1 326 0 1 1663 227 183 13 53 chr5 141425066 141425141 -11112118 + (CA)n Simple_repeat Simple_repeat 1 72 0 1 1663 196 143 0 35 chr5 141425156 141425214 -11112045 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1663 1180 208 105 58 chr5 141426138 141426480 -11110779 + ORR1E LTR MaLR 2 359 0 1 1663 277 206 63 0 chr5 141426515 141426578 -11110681 + MLT1C LTR MaLR 64 130 -337 1 207 741 231 72 74 chr5 141426680 141426940 -11110319 + B4A SINE B4 1 270 -22 1 1664 414 57 0 0 chr5 141426940 141426993 -11110266 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1664 741 217 69 81 chr5 141426993 141427015 -11110244 + B4A SINE B4 271 292 0 1 1664 216 213 0 0 chr5 141427015 141427076 -11110183 + (CA)n Simple_repeat Simple_repeat 1 61 0 1 1664 425 215 38 0 chr5 141427109 141427188 -11110071 + PB1D10 SINE Alu 33 114 -3 1 1664 443 290 122 12 chr5 141428109 141428273 -11108986 + MLT2B2 LTR ERVL 3 184 -331 1 1664 1264 199 76 0 chr5 141428349 141428611 -11108648 + MTEb LTR MaLR 98 379 0 1 1664 382 262 184 0 chr5 141428617 141428775 -11108484 + MLT2B2 LTR ERVL 225 455 -107 1 1664 1244 141 22 2 chr5 141429340 141429595 -11107664 + ZP3AR Satellite Satellite 1 260 0 1 1664 298 284 0 0 chr5 141429559 141429626 -11107633 + tRNA-Ala-GCY_ tRNA tRNA 2 68 -7 1 1664 234 0 0 0 chr5 141429629 141429655 -11107604 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1 1664 556 273 0 0 chr5 141429722 141429832 -11107427 + PB1D10 SINE Alu 1 110 -7 1 1664 553 271 50 6 chr5 141430631 141430791 -11106468 + HAL1-2a_MD LINE L1 2342 2508 -516 1 1664 659 225 5 85 chr5 141430807 141431006 -11106253 + HAL1-2a_MD LINE L1 2331 2513 -511 1 1664 520 247 11 83 chr5 141431030 141431211 -11106048 + HAL1-2a_MD LINE L1 2351 2518 -506 1 1664 221 284 45 0 chr5 141431213 141431280 -11105979 + MER5A DNA MER1_type 33 102 -87 1 1664 1055 244 5 0 chr5 141431315 141431520 -11105739 + B3 SINE B2 1 206 -10 1 1664 782 245 209 98 chr5 141431703 141431885 -11105374 - MTEa LTR MaLR -7 372 198 1 1664 189 0 0 0 chr5 141431885 141431906 -11105353 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1664 782 245 209 98 chr5 141431906 141432058 -11105201 - MTEa LTR MaLR -182 197 1 1 1664 379 258 0 43 chr5 141432058 141432142 -11105117 - PB1D10 SINE Alu -34 83 4 1 1664 343 320 112 24 chr5 141432195 141432489 -11104770 + L1MEc LINE L1 1790 2109 -4291 1 1664 922 275 14 82 chr5 141432619 141432900 -11104359 + B4A SINE B4 2 263 -29 1 1664 234 81 0 0 chr5 141432915 141432952 -11104307 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 1 1664 585 0 0 0 chr5 141433065 141433130 -11104129 + (CA)n Simple_repeat Simple_repeat 2 66 0 1 1664 952 218 80 0 chr5 141433149 141433337 -11103922 + B3 SINE B2 1 203 -13 1 1664 342 0 0 0 chr5 141433397 141433435 -11103824 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1664 1359 79 2 5 chr5 141433588 141433994 -11103265 + (CCTG)n Simple_repeat Simple_repeat 1 405 0 1 1664 732 103 0 0 chr5 141433994 141434101 -11103158 + (TCTG)n Simple_repeat Simple_repeat 2 108 0 1 1664 653 288 6 29 chr5 141434161 141434336 -11102923 - B4 SINE B4 0 292 122 1 1664 459 181 27 62 chr5 141434556 141434668 -11102591 + B1F SINE Alu 17 124 -25 1 1664 438 254 39 105 chr5 141434676 141434905 -11102354 + L1MEc LINE L1 4284 4497 -1822 1 1664 357 258 97 57 chr5 141434912 141435073 -11102186 + L1M5 LINE L1 4391 4557 -1589 1 1664 595 315 36 21 chr5 141435175 141435454 -11101805 + B4A SINE B4 2 284 -8 1 1664 405 0 0 0 chr5 141435987 141436032 -11101227 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 1 1664 913 226 5 34 chr5 141436032 141436238 -11101021 - B3 SINE B2 -16 200 1 1 1664 770 259 0 63 chr5 141436257 141436463 -11100796 - B3A SINE B2 -3 195 3 1 1664 1223 225 12 4 chr5 141436489 141436743 -11100516 - Lx5 LINE L1 -1 7049 6794 1 1664 494 275 75 0 chr5 141436743 141436863 -11100396 - B4A SINE B4 -92 200 72 1 1664 1361 103 16 0 chr5 141436978 141437163 -11100096 + B2_Mm2 SINE B2 1 188 -7 1 1664 371 241 82 18 chr5 141437170 141437280 -11099979 - PB1D7 SINE Alu -2 118 2 1 1664 386 252 112 19 chr5 141437288 141437618 -11099641 + L1M5 LINE L1 5060 5431 -733 1 1664 531 265 133 87 chr5 141437631 141437922 -11099337 + B4 SINE B4 1 272 -20 1 1664 744 152 0 0 chr5 141437941 141438073 -11099186 + (CA)n Simple_repeat Simple_repeat 2 133 0 1 1664 275 258 0 29 chr5 141438276 141438344 -11098915 - RSINE1 SINE B4 -2 163 98 1 1664 371 210 377 19 chr5 141438414 141438570 -11098689 - ID_B1 SINE B4 -8 216 5 1 1664 357 228 13 0 chr5 141438792 141438871 -11098388 + PB1D10 SINE Alu 38 117 0 1 1664 225 0 0 0 chr5 141439480 141439505 -11097754 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1 1664 228 254 107 98 chr5 141439534 141439656 -11097603 - B1_Mus1 SINE Alu -6 142 20 1 1664 251 265 0 46 chr5 141439680 141439713 -11097546 - ID4 SINE ID 0 83 53 1 1664 246 218 48 60 chr5 141439713 141439796 -11097463 - ID4 SINE ID -1 82 1 1 1664 251 265 0 46 chr5 141439796 141439849 -11097410 - ID4 SINE ID -31 52 2 1 1664 1621 126 7 14 chr5 141439849 141440264 -11096995 - ZP3AR Satellite Satellite -11 464 1 1 1664 252 0 0 0 chr5 141440276 141440304 -11096955 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1664 410 262 47 37 chr5 141440310 141440417 -11096842 - ID_B1 SINE B4 -39 185 78 1 1664 230 403 28 14 chr5 141440417 141440558 -11096701 - MIR SINE MIR -75 187 45 1 1664 560 175 52 9 chr5 141440621 141440952 -11096307 + (TG)n Simple_repeat Simple_repeat 1 345 0 1 1664 433 149 26 17 chr5 141440964 141441080 -11096179 + (TG)n Simple_repeat Simple_repeat 2 118 0 1 1664 313 288 156 28 chr5 141441116 141441366 -11095893 - B4 SINE B4 -10 282 1 1 1664 1317 72 35 0 chr5 141442097 141442306 -11094953 - ZP3AR Satellite Satellite -32 216 1 1 1664 413 231 32 71 chr5 141442390 141442516 -11094743 + B1F SINE Alu 29 149 0 1 1664 715 311 39 25 chr5 141442647 141442927 -11094332 - B4A SINE B4 -4 288 5 1 1664 240 319 141 16 chr5 141443975 141444096 -11093163 - B4 SINE B4 -2 290 155 1 1664 386 338 99 26 chr5 141444227 141444531 -11092728 + Lx8 LINE L1 7146 7471 -2 1 1664 510 241 20 42 chr5 141444534 141444725 -11092534 - B3A SINE B2 -9 186 4 1 1664 460 208 48 40 chr5 141444729 141444854 -11092405 + HAL1-2a_MD LINE L1 2334 2459 -565 1 1664 249 261 33 83 chr5 141444855 141444976 -11092283 + PB1D10 SINE Alu 2 116 -1 1 1664 577 222 0 8 chr5 141445007 141445125 -11092134 - B1F2 SINE Alu -31 118 2 1 1664 406 229 44 0 chr5 141445373 141445468 -11091791 - B1F1 SINE Alu 0 117 17 1 1664 198 171 0 0 chr5 141445520 141445561 -11091698 + CT-rich Low_complexity Low_complexity 4 44 0 1 1664 317 285 114 34 chr5 141445564 141445713 -11091546 - RSINE1 SINE B4 0 165 5 1 1664 706 243 0 22 chr5 141445807 141445946 -11091313 - ID_B1 SINE B4 -8 216 81 1 1664 238 378 72 26 chr5 141445969 141446162 -11091097 + L3 LINE CR1 3496 3697 -792 1 1664 621 225 7 21 chr5 141446872 141447017 -11090242 - B1F SINE Alu -6 143 1 1 1664 999 151 7 0 chr5 141447673 141447819 -11089440 + B1_Mur3 SINE Alu 1 147 -2 1 1664 661 196 29 36 chr5 141447877 141448015 -11089244 + ID_B1 SINE B4 80 216 -8 1 1664 207 114 0 0 chr5 141448015 141448050 -11089209 + (CCCA)n Simple_repeat Simple_repeat 2 36 0 1 1664 918 140 0 0 chr5 141448057 141448236 -11089023 + (CCAA)n Simple_repeat Simple_repeat 2 180 0 1 1664 859 209 111 10 chr5 141448498 141448696 -11088563 + ID_B1 SINE B4 6 223 -1 1 1664 312 280 50 66 chr5 141448761 141449002 -11088257 + HAL1 LINE L1 1526 1762 -745 1 1664 397 294 18 9 chr5 141449009 141449119 -11088140 + MLT1A1 LTR MaLR 1 111 -279 1 1664 619 262 0 24 chr5 141449185 141449310 -11087949 - RSINE1 SINE B4 -43 122 1 1 1664 463 281 26 0 chr5 141449584 141449698 -11087561 + B4A SINE B4 6 122 -170 1 1664 293 286 19 9 chr5 141449742 141449848 -11087411 + G-rich Low_complexity Low_complexity 4 110 0 1 1664 832 260 44 96 chr5 141449848 141450127 -11087132 - MTE2a LTR MaLR -117 262 19 1 1664 235 361 25 15 chr5 141450449 141450646 -11086613 + L1M5 LINE L1 5039 5237 -909 1 1664 1076 226 22 4 chr5 141450824 141451051 -11086208 + B4A SINE B4 1 231 -61 1 1664 297 272 195 50 chr5 141451059 141451218 -11086041 + B2_Mm2 SINE B2 8 189 -6 1 1664 819 186 26 73 chr5 141451227 141451418 -11085841 + B3A SINE B2 1 182 -16 1 1664 720 85 55 21 chr5 141451424 141451719 -11085540 + (CAGA)n Simple_repeat Simple_repeat 1 305 0 1 1664 957 108 0 0 chr5 141451719 141451895 -11085364 + (CA)n Simple_repeat Simple_repeat 2 177 0 1 1664 606 207 49 8 chr5 141452051 141452173 -11085086 - MTD LTR MaLR -7 412 286 1 1664 910 264 105 19 chr5 141452179 141452492 -11084767 - MTD LTR MaLR -75 344 5 1 1664 525 259 47 9 chr5 141452535 141452694 -11084565 + MLT1A1 LTR MaLR 212 408 0 1 1664 439 331 101 14 chr5 141453218 141453738 -11083521 + L1MD LINE L1 4414 5012 -1134 1 1664 370 291 54 41 chr5 141453762 141453909 -11083350 + Lx8 LINE L1 6880 7028 -445 1 1664 339 130 0 0 chr5 141453992 141454046 -11083213 + (GGGA)n Simple_repeat Simple_repeat 2 55 0 1 1664 29 0 0 0 chr5 141454106 141454135 -11083124 + AT_rich Low_complexity Low_complexity 1 29 0 1 1664 921 247 15 25 chr5 141454143 141454342 -11082917 + B3 SINE B2 1 197 -19 1 1664 679 311 112 54 chr5 141454348 141454903 -11082356 + L1ME1 LINE L1 5566 6152 -27 1 1664 238 191 0 0 chr5 141454908 141454950 -11082309 + MER94 DNA AcHobo 93 134 0 1 1664 734 297 43 77 chr5 141455145 141455495 -11081764 + ORR1E LTR MaLR 22 359 0 1 1664 258 194 42 56 chr5 141455536 141455607 -11081652 - ID4 SINE ID -13 70 1 1 1664 1512 58 18 0 chr5 141455561 141455932 -11081327 - ZP3AR Satellite Satellite -18 377 1 1 1664 483 252 48 0 chr5 141455903 141456006 -11081253 - MTEa LTR MaLR -269 110 3 1 1664 862 206 18 6 chr5 141456008 141456174 -11081085 + B3 SINE B2 3 170 -46 1 1664 464 326 77 53 chr5 141456339 141456624 -11080635 - B4A SINE B4 0 292 1 1 1664 342 0 0 0 chr5 141456638 141456676 -11080583 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1 1664 718 243 81 6 chr5 141456678 141456852 -11080407 - ID_B1 SINE B4 -29 195 9 1 1664 427 240 112 51 chr5 141456857 141457072 -11080187 + RLTR15 LTR ERVK 1 228 -131 1 1664 434 278 107 131 chr5 141457538 141457836 -11079423 - B4A SINE B4 -1 291 1 1 1664 354 288 114 106 chr5 141458384 141458629 -11078630 + L1MCa LINE L1 759 1005 -5503 1 1664 2252 134 123 10 chr5 141458633 141459047 -11078212 - RMER4A LTR ERVK 0 466 6 1 1664 369 250 16 115 chr5 141459071 141459193 -11078066 + B1F SINE Alu 39 148 -1 1 1664 379 314 0 0 chr5 141459444 141459549 -11077710 + PB1D10 SINE Alu 5 109 -8 1 1664 1637 48 7 0 chr5 141459565 141459822 -11077437 + ZP3AR Satellite Satellite 1 258 0 1 1664 26 0 0 0 chr5 141459882 141459908 -11077351 + AT_rich Low_complexity Low_complexity 1 26 0 1 1664 361 309 32 8 chr5 141460223 141460347 -11076912 - MER5A1 DNA MER1_type -19 147 21 1 1664 407 293 15 8 chr5 141460367 141460501 -11076758 + L1ME1 LINE L1 6022 6156 -23 1 1664 633 329 5 32 chr5 141460502 141460568 -11076691 - MTEa LTR MaLR 0 379 313 1 1664 975 237 101 71 chr5 141460568 141460936 -11076323 + MTE2a LTR MaLR 1 379 0 1 1664 633 329 5 32 chr5 141460936 141461089 -11076170 - MTEa LTR MaLR -67 312 166 1 1664 369 109 0 0 chr5 141461253 141461308 -11075951 + (TG)n Simple_repeat Simple_repeat 2 56 0 1 1664 468 91 0 0 chr5 141461606 141461672 -11075587 + (TC)n Simple_repeat Simple_repeat 2 67 0 1 1664 830 272 80 69 chr5 141461685 141461961 -11075298 - B4A SINE B4 -8 284 6 1 1664 564 235 5 143 chr5 141461971 141462160 -11075099 - B4 SINE B4 -86 206 44 1 1664 1057 257 158 14 chr5 141462370 141462717 -11074542 - MTD LTR MaLR -14 405 9 1 1664 523 323 8 0 chr5 141462839 141462963 -11074296 - ID_B1 SINE B4 -94 130 6 1 1664 416 160 61 8 chr5 141463068 141463200 -11074059 + (TATATG)n Simple_repeat Simple_repeat 6 144 0 1 1664 423 230 124 15 chr5 141463237 141463374 -11073885 - MLT1A1 LTR MaLR 0 408 257 1 1664 242 116 23 0 chr5 141463527 141463570 -11073689 + (TC)n Simple_repeat Simple_repeat 2 45 0 1 1664 396 301 97 8 chr5 141463596 141463720 -11073539 - ID_B1 SINE B4 0 224 90 1 1664 183 300 150 0 chr5 141463721 141463781 -11073478 - MIRm SINE MIR -123 153 85 1 1664 411 260 0 68 chr5 141463927 141464030 -11073229 - RSINE1 SINE B4 -5 160 65 1 1664 263 132 0 0 chr5 141464125 141464163 -11073096 - B4 SINE B4 -2 290 253 1 1664 346 188 10 10 chr5 141464250 141464347 -11072912 + CT-rich Low_complexity Low_complexity 2 98 0 1 1664 959 246 9 19 chr5 141465358 141465569 -11071690 + B4 SINE B4 9 217 -75 1 1664 752 263 7 7 chr5 141465579 141465732 -11071527 + RSINE1 SINE B4 3 155 -10 1 1664 663 144 0 0 chr5 141465741 141465852 -11071407 + (GGA)n Simple_repeat Simple_repeat 2 112 0 1 1664 630 71 0 0 chr5 141465852 141465936 -11071323 + (GAAAA)n Simple_repeat Simple_repeat 5 88 0 1 1664 351 192 0 0 chr5 141465993 141466066 -11071193 + (CA)n Simple_repeat Simple_repeat 1 73 0 1 1664 307 364 28 33 chr5 141466257 141466439 -11070820 - MIRc SINE MIR 0 268 88 1 1664 272 229 33 0 chr5 141466506 141466567 -11070692 - MER117 DNA MER1_type -40 157 95 1 1664 315 288 14 107 chr5 141466812 141466952 -11070307 - B4A SINE B4 0 292 166 1 1664 612 290 0 14 chr5 141467202 141467349 -11069910 + RSINE1 SINE B4 5 149 -16 1 1664 505 215 0 0 chr5 141467408 141467501 -11069758 + PB1D9 SINE Alu 7 99 -21 1 1664 288 188 0 184 chr5 141467416 141467514 -11069745 + MT2B LTR ERVL 179 258 -343 1 1664 1034 197 70 29 chr5 141467693 141467934 -11069325 - ORR1D1 LTR MaLR -122 252 2 1 1664 447 19 0 0 chr5 141467935 141467987 -11069272 + (GGA)n Simple_repeat Simple_repeat 1 52 0 1 1664 342 309 0 0 chr5 141468087 141468168 -11069091 - ID4_ SINE ID -1 82 2 1 1664 301 312 124 21 chr5 141468275 141468468 -11068791 + L1ME3 LINE L1 5874 6086 -76 1 1664 196 104 0 59 chr5 141468625 141468676 -11068583 + G-rich Low_complexity Low_complexity 1 48 0 1 1664 670 180 125 0 chr5 141469011 141469139 -11068120 + B1_Mur1 SINE Alu 6 149 0 1 1664 1028 161 139 0 chr5 141469146 141469326 -11067933 + B3 SINE B2 1 205 -11 1 1664 403 252 212 8 chr5 141469580 141469712 -11067547 + B4A SINE B4 37 195 -97 1 1664 1074 253 37 14 chr5 141469716 141470013 -11067246 + RMER20A LTR ERVK 213 516 0 1 1664 419 314 8 16 chr5 141470013 141470130 -11067129 - B4A SINE B4 -169 123 8 1 1664 217 250 12 62 chr5 141470058 141470139 -11067120 - B3A SINE B2 -120 78 2 1 1664 217 275 42 28 chr5 141470151 141470222 -11067037 - PB1D10 SINE Alu -16 101 30 1 1664 501 71 0 0 chr5 141470322 141470392 -11066867 + (TG)n Simple_repeat Simple_repeat 1 70 0 1 1664 331 292 11 11 chr5 141470544 141470634 -11066625 + MER58B DNA MER1_type 250 339 -2 1 1664 372 266 28 105 chr5 141470864 141471007 -11066252 - B1F SINE Alu -13 136 5 1 1664 927 173 2 4 chr5 141471019 141471489 -11065770 + (TG)n Simple_repeat Simple_repeat 1 468 0 1 1664 702 97 0 0 chr5 141471542 141471655 -11065604 + (TG)n Simple_repeat Simple_repeat 1 113 0 1 1664 963 275 83 20 chr5 141471680 141471932 -11065327 - B4 SINE B4 -20 272 5 1 1664 433 159 154 86 chr5 141471960 141472077 -11065182 - B1_Mus1 SINE Alu -1 148 24 1 1664 854 259 54 0 chr5 141472084 141472289 -11064970 - B3 SINE B2 0 216 1 1 1664 191 333 12 24 chr5 141472313 141472396 -11064863 - MIR SINE MIR -107 101 20 1 1664 1242 94 3 3 chr5 141473076 141473265 -11063994 + ZP3AR Satellite Satellite 1 188 0 1 1664 942 158 7 0 chr5 141473712 141473858 -11063401 - B1_Mus1 SINE Alu -1 147 1 1 1664 803 263 11 0 chr5 141473861 141474051 -11063208 - B3A SINE B2 -6 192 1 1 1664 1334 174 9 9 chr5 141474091 141474312 -11062947 - URR1B DNA MER1_type -4 221 1 1 1664 561 76 33 0 chr5 141474461 141474553 -11062706 + (GA)n Simple_repeat Simple_repeat 2 96 0 1 1664 1510 52 12 3 chr5 141474558 141474845 -11062414 + ZP3AR Satellite Satellite 1 289 -1 1 1664 290 250 92 11 chr5 141475191 141475296 -11061963 - PB1D7 SINE Alu -22 127 16 1 1664 237 62 62 0 chr5 141476543 141476591 -11060668 + (GA)n Simple_repeat Simple_repeat 1 51 0 1 1664 478 295 136 5 chr5 141477180 141477364 -11059895 - B4A SINE B4 -55 237 30 1 1664 1610 61 13 1 chr5 141477729 141478267 -11058992 - ZP3AR Satellite Satellite 0 544 1 1 1664 25 0 0 0 chr5 141478706 141478731 -11058528 + AT_rich Low_complexity Low_complexity 1 25 0 1 1664 1086 265 37 19 chr5 141478767 141479036 -11058223 - B4 SINE B4 -2 290 17 1 1664 328 308 56 37 chr5 141479050 141479266 -11057993 - L1MCa LINE L1 -4468 2040 1821 1 1664 25 31 0 0 chr5 141479266 141479298 -11057961 + AT_rich Low_complexity Low_complexity 1 32 0 1 1664 217 252 50 29 chr5 141479298 141479437 -11057822 + (TATATG)n Simple_repeat Simple_repeat 6 147 0 1 1664 913 232 6 0 chr5 141479466 141479647 -11057612 - B3A SINE B2 -16 182 1 1 1664 263 333 34 0 chr5 141479739 141479856 -11057403 + Charlie5 DNA MER1_type 1 121 -2503 1 1664 459 287 104 0 chr5 141479868 141480032 -11057227 + Charlie5 DNA MER1_type 2237 2417 -207 1 1664 809 304 25 14 chr5 141480053 141480337 -11056922 + B4A SINE B4 2 288 -4 1 1664 414 267 39 19 chr5 141480690 141480793 -11056466 + PB1D10 SINE Alu 9 113 -4 1 1664 497 210 125 31 chr5 141480815 141481007 -11056252 - MER5C DNA MER1_type -48 265 56 1 1664 1006 257 36 7 chr5 141481240 141481518 -11055741 - RMER15 LTR ERVL -3 572 287 1 1664 660 222 83 0 chr5 141481670 141481814 -11055445 + ID_B1 SINE B4 14 169 -55 1 1664 1742 189 36 12 chr5 141481814 141482010 -11055249 - ORR1C2 LTR MaLR -1 383 186 1 1664 486 0 0 0 chr5 141482010 141482064 -11055195 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1664 1742 189 36 12 chr5 141482064 141482199 -11055060 - ORR1C2 LTR MaLR -199 185 45 1 1664 613 106 19 0 chr5 141482224 141482328 -11054931 + (GGA)n Simple_repeat Simple_repeat 3 108 0 1 1664 476 266 18 0 chr5 141482810 141482919 -11054340 + PB1 SINE Alu 15 125 -2 1 1664 764 262 117 0 chr5 141482950 141483156 -11054103 + B4A SINE B4 1 230 -62 1 1664 395 325 8 0 chr5 141483157 141483277 -11053982 + RSINE1 SINE B4 4 124 -41 1 1664 483 18 0 0 chr5 141483277 141483333 -11053926 + (CA)n Simple_repeat Simple_repeat 1 56 0 1 1664 441 0 0 0 chr5 141483333 141483381 -11053878 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1664 1109 73 7 0 chr5 141483527 141483664 -11053595 + B1_Mus2 SINE Alu 1 138 -9 1 1664 361 317 8 0 chr5 141483775 141483898 -11053361 + HAL1 LINE L1 1529 1652 -855 1 1664 971 247 14 175 chr5 141484047 141484395 -11052864 + B4A SINE B4 1 292 0 1 1664 945 250 252 7 chr5 141484471 141484773 -11052486 + MTEa LTR MaLR 1 376 -3 1 1664 243 0 0 0 chr5 141484827 141484854 -11052405 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1 1664 351 289 0 62 chr5 141486025 141486217 -11051042 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1 1664 430 306 116 0 chr5 141486288 141486435 -11050824 - B4 SINE B4 -119 173 10 1 1664 1762 214 52 25 chr5 141486505 141486908 -11050351 + MTD LTR MaLR 6 419 0 1 1664 243 273 0 98 chr5 141487183 141487244 -11050015 + B4A SINE B4 238 292 0 1 1664 191 65 42 42 chr5 141487275 141487323 -11049936 + (GGA)n Simple_repeat Simple_repeat 3 50 0 1 1664 468 51 0 0 chr5 141487335 141487394 -11049865 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 1 1664 593 283 145 52 chr5 141488545 141488802 -11048457 + B4 SINE B4 31 281 -11 1 1664 216 273 0 0 chr5 141488805 141488882 -11048377 + (CATA)n Simple_repeat Simple_repeat 2 78 0 1 1664 542 299 52 35 chr5 141489732 141489961 -11047298 + Helitron1Nb_Mam RC Helitron 26 258 -858 1 1664 186 103 0 0 chr5 141489971 141490000 -11047259 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1664 621 223 136 45 chr5 141490020 141490241 -11047018 - B4A SINE B4 -47 245 5 1 1664 1375 314 53 46 chr5 141490516 141491435 -11045824 - L1_Mur3 LINE L1 -64 5816 4891 1 1664 313 250 163 57 chr5 141491742 141491820 -11045439 - L1M2 LINE L1 -1260 4883 4798 1 1664 219 36 0 0 chr5 141491820 141491848 -11045411 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1664 213 39 0 0 chr5 141491858 141491884 -11045375 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 1 1664 313 250 163 57 chr5 141491884 141491917 -11045342 - L1M2 LINE L1 -1354 4789 4748 1 1664 1086 237 52 85 chr5 141491917 141492365 -11044894 - MTD LTR MaLR 0 379 5 1 1664 333 0 0 0 chr5 141492588 141492625 -11044634 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1664 308 261 33 22 chr5 141492787 141492877 -11044382 + Helitron1Nb_Mam RC Helitron 1023 1113 -3 1 1664 755 221 110 4 chr5 141492926 141493153 -11044106 - L1M4 LINE L1 -1819 4327 4077 1 1664 553 246 14 34 chr5 141493235 141493382 -11043877 - MER97c DNA MER1_type? -807 283 140 1 1664 804 21 0 0 chr5 141493390 141493484 -11043775 + (TTTC)n Simple_repeat Simple_repeat 2 95 0 1 1664 237 33 0 0 chr5 141493487 141493517 -11043742 + (TG)n Simple_repeat Simple_repeat 2 31 0 1 1664 205 288 189 0 chr5 141493849 141493960 -11043299 + MIRb SINE MIR 42 173 -95 1 1664 450 0 0 0 chr5 141493999 141494049 -11043210 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1664 423 0 0 0 chr5 141494049 141494095 -11043164 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1664 482 0 17 0 chr5 141494297 141494355 -11042904 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1664 297 51 0 0 chr5 141494750 141494789 -11042470 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1664 211 321 0 0 chr5 141494802 141494858 -11042401 - RSINE1 SINE B4 -17 148 93 1 1664 257 340 0 65 chr5 141495260 141495367 -11041892 - RSINE1 SINE B4 -63 102 3 1 1664 1088 117 0 0 chr5 141495492 141495637 -11041622 - B1_Mur4 SINE Alu -5 145 1 1 1664 424 213 148 0 chr5 141496210 141496332 -11040927 + RMER15 LTR ERVL 422 561 -14 1 1664 294 234 39 169 chr5 141496346 141496500 -11040759 + MTEb LTR MaLR 202 335 -44 1 1664 486 319 30 42 chr5 141496959 141497016 -11040243 - B4 SINE B4 -2 290 232 1 1664 742 261 64 170 chr5 141497016 141497440 -11039819 + MTE2a LTR MaLR 1 379 0 1 1664 486 319 30 42 chr5 141497440 141497549 -11039710 - B4 SINE B4 -61 231 126 1 1664 4868 157 36 61 chr5 141497554 141498458 -11038801 - RLTR25A LTR ERVK -2 1026 114 1 1664 432 0 0 0 chr5 141498458 141498506 -11038753 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1664 4868 145 27 55 chr5 141498506 141498639 -11038620 - RLTR25A LTR ERVK -988 115 2 1 1664 723 253 335 8 chr5 141498856 141499156 -11038103 + MTD LTR MaLR 20 404 -15 1 1664 545 216 21 3 chr5 141499646 141499937 -11037322 + GA-rich Low_complexity Low_complexity 1 296 0 1 1664 1085 207 103 8 chr5 141500125 141500378 -11036881 + B4A SINE B4 1 277 -15 1 1664 579 284 148 58 chr5 141500522 141500847 -11036412 + ORR1E LTR MaLR 2 355 -4 2 1664 1386 168 304 30 chr5 141500944 141501306 -11035953 + RMER6B LTR ERVK 1 461 0 3 1664 485 195 229 0 chr5 141501340 141501458 -11035801 - B1_Mur3 SINE Alu -2 147 3 4 1664 888 310 149 6 chr5 141501531 141501859 -11035400 + MTEa LTR MaLR 2 376 -3 5 1664 289 289 56 0 chr5 141501969 141502059 -11035200 + MLT1C LTR MaLR 302 396 -71 6 1664 719 250 11 14 chr5 141502224 141502442 -11034817 + MTD LTR MaLR 1 187 -192 7 1664 1139 265 96 7 chr5 141502440 141502766 -11034493 + MTD LTR MaLR 56 404 -15 8 1664 992 158 16 37 chr5 141502923 141503113 -11034146 + ZP3AR Satellite Satellite 5 190 -22 9 1664 261 119 0 0 chr5 141503147 141503189 -11034070 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 1 1664 187 216 27 13 chr5 141503190 141503265 -11033994 + GA-rich Low_complexity Low_complexity 4 79 0 1 1664 585 297 146 56 chr5 141503385 141503742 -11033517 + MLT1B LTR MaLR 2 390 0 1 1664 537 227 98 98 chr5 141504762 141504858 -11032401 + B4 SINE B4 4 113 -179 1 1664 573 55 0 0 chr5 141504858 141504931 -11032328 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 1 1664 537 227 98 98 chr5 141504931 141505108 -11032151 + B4 SINE B4 114 277 -15 1 1664 240 143 0 0 chr5 141505243 141505285 -11031974 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1664 237 271 60 131 chr5 141505668 141505851 -11031408 + L1M4 LINE L1 5668 5837 -337 1 1664 212 266 15 30 chr5 141505858 141505924 -11031335 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 1 1664 300 27 0 0 chr5 141505925 141505962 -11031297 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1664 802 254 60 15 chr5 141506215 141506411 -11030848 + B4A SINE B4 26 230 -62 1 1664 254 250 0 0 chr5 141506411 141506459 -11030800 + RSINE1 SINE B4 3 50 -115 2 1664 1521 60 0 27 chr5 141506455 141506710 -11030549 + ZP3AR Satellite Satellite 1 248 0 2 1664 1222 105 130 0 chr5 141507167 141507367 -11029892 + URR1A DNA MER1_type 1 226 0 2 1664 599 291 115 85 chr5 141507427 141507454 -11029805 + ORR1E LTR MaLR 2 27 -332 2 1664 2216 95 30 65 chr5 141507454 141507792 -11029467 - ORR1A2 LTR MaLR -1 326 1 2 1664 1014 254 158 21 chr5 141507801 141508131 -11029128 - MTE2b LTR MaLR -4 375 1 2 1664 599 291 115 85 chr5 141508131 141508240 -11029019 + ORR1E LTR MaLR 33 152 -207 2 1664 2587 132 21 40 chr5 141508240 141508666 -11028593 + MTC LTR MaLR 3 420 -1 2 1664 599 291 115 85 chr5 141508666 141508849 -11028410 + ORR1E LTR MaLR 153 342 -17 2 1664 679 329 46 25 chr5 141509120 141509404 -11027855 - MLT1H LTR MaLR -250 299 10 2 1664 999 120 14 0 chr5 141509465 141509607 -11027652 + B1_Mur4 SINE Alu 2 145 -5 2 1664 1425 227 50 0 chr5 141509656 141509934 -11027325 + B4 SINE B4 1 292 0 2 1664 1438 58 12 4 chr5 141510790 141510995 -11026264 + ZP3AR Satellite Satellite 1 206 -1 3 1664 343 198 24 12 chr5 141510995 141511077 -11026182 + ID4 SINE ID 1 83 0 3 1664 297 0 0 0 chr5 141512646 141512679 -11024580 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 3 1664 587 218 161 7 chr5 141512694 141512837 -11024422 - ID_B1 SINE B4 -11 213 49 3 1664 1037 109 0 14 chr5 141512851 141513214 -11024045 + (TCCC)n Simple_repeat Simple_repeat 1 358 0 3 1664 939 139 0 0 chr5 141513717 141513897 -11023362 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1664 782 281 131 12 chr5 141513964 141514216 -11023043 - B4A SINE B4 -2 290 9 3 1664 725 227 149 15 chr5 141514220 141514421 -11022838 - B4 SINE B4 -63 229 2 3 1664 378 0 0 0 chr5 141514554 141514596 -11022663 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1664 1245 42 0 0 chr5 141515901 141516045 -11021214 - B1_Mus2 SINE Alu 0 147 4 3 1664 346 283 211 24 chr5 141516348 141516594 -11020665 + B4 SINE B4 1 292 0 4 1664 288 233 0 0 chr5 141516595 141516668 -11020591 + (CA)n Simple_repeat Simple_repeat 2 74 0 4 1664 978 80 0 0 chr5 141517256 141517406 -11019853 + (GA)n Simple_repeat Simple_repeat 1 150 0 4 1664 760 152 43 14 chr5 141517477 141517617 -11019642 - B1_Mus1 SINE Alu 0 148 5 4 1664 1011 294 16 4 chr5 141517619 141517872 -11019387 - B4A SINE B4 -36 256 1 4 1664 303 268 71 99 chr5 141517872 141518083 -11019176 - ORR1D2 LTR MaLR -57 313 109 4 1664 305 247 21 105 chr5 141518295 141518390 -11018869 + MLT1C LTR MaLR 36 122 -345 4 1664 681 228 27 0 chr5 141518531 141518678 -11018581 + MTEa LTR MaLR 58 208 -171 4 1664 236 207 106 35 chr5 141518678 141518763 -11018496 + MTE2a LTR MaLR 1 91 -288 4 1664 495 287 108 42 chr5 141518810 141519050 -11018209 + MTE2a LTR MaLR 74 329 -50 4 1664 342 297 112 98 chr5 141519052 141519257 -11018002 + MLT1C LTR MaLR 253 460 -7 4 1664 597 283 132 26 chr5 141519329 141519518 -11017741 - B4A SINE B4 0 292 84 4 1664 1298 235 185 12 chr5 141519536 141520027 -11017232 - Lx8 LINE L1 -3 7470 6895 5 1664 306 224 179 0 chr5 141520034 141520101 -11017158 - B4A SINE B4 -212 80 2 4 1664 442 301 18 0 chr5 141520659 141520772 -11016487 + PB1D10 SINE Alu 1 115 -2 5 1664 363 60 0 0 chr5 141521192 141521242 -11016017 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1664 828 264 19 58 chr5 141521290 141521547 -11015712 - B4 SINE B4 0 292 46 5 1664 1900 200 61 37 chr5 141521567 141522029 -11015230 + RLTR11A LTR ERVK 35 507 -21 5 1664 284 231 0 0 chr5 141522201 141522253 -11015006 - PB1D10 SINE Alu -36 81 30 5 1664 821 220 152 0 chr5 141522445 141522622 -11014637 + ID_B1 SINE B4 2 205 -19 5 1664 264 100 0 0 chr5 141522627 141522667 -11014592 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 5 1664 456 19 0 0 chr5 141522770 141522823 -11014436 + (TG)n Simple_repeat Simple_repeat 1 53 0 5 1664 265 274 70 64 chr5 141522835 141522991 -11014268 + RLTR22_Mur LTR ERVK 1281 1437 -411 5 1664 622 258 0 121 chr5 141522973 141523163 -11014096 - B4 SINE B4 -2 290 124 6 1664 377 262 42 7 chr5 141523168 141523267 -11013992 - B1F SINE Alu 0 117 17 6 1664 212 254 101 29 chr5 141523214 141523283 -11013976 - B4A SINE B4 -137 155 82 6 1664 33 0 0 0 chr5 141523497 141523530 -11013729 + AT_rich Low_complexity Low_complexity 1 33 0 6 1664 268 376 11 61 chr5 141524024 141524205 -11013054 + B4A SINE B4 3 174 -118 6 1664 297 0 0 0 chr5 141524254 141524287 -11012972 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1664 379 304 0 81 chr5 141524592 141524728 -11012531 + PB1 SINE Alu 1 125 -2 6 1664 825 62 0 9 chr5 141524730 141524843 -11012416 + ZP3AR Satellite Satellite 90 201 -11 6 1664 353 219 0 0 chr5 141524843 141524907 -11012352 + ID4_ SINE ID 1 64 -19 6 1664 771 57 0 0 chr5 141524907 141524918 -11012341 + ZP3AR Satellite Satellite 96 106 -106 6 1664 410 245 38 0 chr5 141525572 141525677 -11011582 + PB1D10 SINE Alu 1 119 -8 6 1664 387 0 0 0 chr5 141525755 141525798 -11011461 + (TC)n Simple_repeat Simple_repeat 2 44 0 7 1664 574 305 33 0 chr5 141525811 141525962 -11011297 - RSINE1 SINE B4 -5 160 5 7 1664 234 0 0 0 chr5 141525989 141526015 -11011244 + (TG)n Simple_repeat Simple_repeat 1 26 0 7 1664 890 270 91 19 chr5 141526023 141526287 -11010972 - B4A SINE B4 -6 286 4 7 1664 1286 265 96 63 chr5 141526554 141527065 -11010194 + RMER5 LTR ERV1 1 528 -6 7 1664 234 0 0 0 chr5 141527105 141527131 -11010128 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 7 1664 931 216 28 37 chr5 141527171 141527387 -11009872 - B3 SINE B2 -1 215 2 7 1664 4326 191 44 8 chr5 141527430 141528287 -11008972 + Lx6 LINE L1 6350 7237 -223 7 1664 327 113 0 0 chr5 141528294 141528347 -11008912 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 7 1664 367 250 23 0 chr5 141528404 141528492 -11008767 + Lx7 LINE L1 7207 7296 -400 7 1664 232 271 107 54 chr5 141528560 141528802 -11008457 + Lx7 LINE L1 7440 7694 -2 7 1664 195 184 0 0 chr5 141528810 141528848 -11008411 + (ATG)n Simple_repeat Simple_repeat 3 40 0 8 1664 268 254 0 87 chr5 141528925 141528994 -11008265 + PB1D7 SINE Alu 52 114 -6 8 1664 263 328 41 25 chr5 141529094 141529216 -11008043 + L2b LINE L2 3270 3426 0 8 1664 839 303 12 24 chr5 141529820 141530067 -11007192 + B4A SINE B4 1 244 -48 8 1664 521 310 0 0 chr5 141530061 141530177 -11007082 + RSINE1 SINE B4 24 139 -26 8 1664 207 100 0 0 chr5 141530211 141530241 -11007018 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 8 1664 271 238 47 12 chr5 141530299 141530384 -11006875 + (CATG)n Simple_repeat Simple_repeat 1 88 0 8 1664 246 262 0 0 chr5 141530386 141530470 -11006789 + (CA)n Simple_repeat Simple_repeat 1 84 0 8 1664 315 288 25 12 chr5 141531641 141531722 -11005537 - ID4 SINE ID -1 82 1 8 1664 553 60 119 0 chr5 141531722 141531806 -11005453 - ZP3AR Satellite Satellite -117 95 2 8 1664 319 274 9 112 chr5 141531808 141531915 -11005344 - PB1D10 SINE Alu 0 117 22 9 1664 216 0 0 0 chr5 141532189 141532213 -11005046 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1664 1764 186 59 25 chr5 141532636 141532994 -11004265 - ORR1C2 LTR MaLR 0 384 15 9 1664 597 337 5 10 chr5 141533049 141533244 -11004015 - ZP3AR Satellite Satellite -2 210 17 9 1664 1027 251 57 38 chr5 141533710 141534002 -11003257 + ORR1E LTR MaLR 1 320 -59 9 1664 378 292 0 103 chr5 141534417 141534543 -11002716 - PB1D7 SINE Alu -1 119 7 9 1664 504 0 0 0 chr5 141534605 141534661 -11002598 + (TC)n Simple_repeat Simple_repeat 1 56 0 9 1664 1165 263 6 74 chr5 141534673 141534750 -11002509 - B4A SINE B4 0 292 227 9 1664 961 236 23 28 chr5 141534750 141534964 -11002295 - B3 SINE B2 -3 213 1 9 1664 1165 263 6 74 chr5 141534964 141535198 -11002061 - B4A SINE B4 -66 226 2 9 1664 624 226 17 45 chr5 141535275 141535456 -11001803 - B3A SINE B2 -15 201 32 9 1664 246 233 81 32 chr5 141535401 141535463 -11001796 - B4 SINE B4 -212 80 16 1 1664 214 335 75 14 chr5 141535545 141535733 -11001526 + MIR SINE MIR 44 258 -10 1 1664 848 228 187 33 chr5 141535934 141536194 -11001065 - B4 SINE B4 0 292 7 1 1664 893 286 35 25 chr5 141536584 141536867 -11000392 - B4 SINE B4 -6 286 1 1 1664 24 0 0 0 chr5 141536890 141536914 -11000345 + AT_rich Low_complexity Low_complexity 1 24 0 1 1664 357 293 101 60 chr5 141536958 141537176 -11000083 - RMER15 LTR ERVL -3 572 346 1 1664 435 197 188 8 chr5 141537243 141537371 -10999888 - Lx5 LINE L1 0 7050 6900 1 1664 2290 144 82 0 chr5 141537373 141537777 -10999482 + L1_Mur2 LINE L1 5186 5622 -255 1 1664 326 294 117 10 chr5 141537939 141538042 -10999217 - RSINE1 SINE B4 -41 124 11 1 1664 506 248 126 42 chr5 141538605 141538748 -10998511 + B4 SINE B4 1 155 -137 1 1664 254 267 13 26 chr5 141538905 141538982 -10998277 + ID4 SINE ID 1 76 -7 1 1664 412 253 37 16 chr5 141539267 141539399 -10997860 + B1F SINE Alu 10 144 -5 1 1664 1008 96 7 27 chr5 141539447 141539544 -10997715 + ZP3AR Satellite Satellite 2 148 -64 1 1664 223 265 105 89 chr5 141539544 141539597 -10997662 + BC1_Mm scRNA scRNA 1 46 -106 1 1664 267 214 26 79 chr5 141539597 141539673 -10997586 + ID2 SINE ID 1 72 -11 1 1664 223 265 105 89 chr5 141539673 141539743 -10997516 + BC1_Mm scRNA scRNA 47 126 -26 1 1664 712 348 68 22 chr5 141539831 141540198 -10997061 + MLT1F LTR MaLR 47 430 -118 1 1664 1203 198 67 160 chr5 141540210 141540655 -10996604 + MTD LTR MaLR 1 404 -15 1 1664 795 273 36 43 chr5 141540732 141540985 -10996274 + B4A SINE B4 5 255 -37 1 1664 571 312 61 58 chr5 141540913 141541223 -10996036 + MTE-int LTR MaLR 211 521 -1059 1 1664 565 330 101 64 chr5 141541233 141541579 -10995680 - ORR1E LTR MaLR 0 359 1 1 1664 248 234 0 5 chr5 141541619 141541684 -10995575 + B4 SINE B4 17 80 -85 1 1664 529 279 198 103 chr5 141541684 141542023 -10995236 - MTD LTR MaLR 0 379 9 1 1664 576 303 122 5 chr5 141542020 141542209 -10995050 + B4 SINE B4 80 290 -2 1 1664 644 205 6 0 chr5 141542877 141543038 -10994221 + (TG)n Simple_repeat Simple_repeat 1 162 0 1 1664 519 208 0 0 chr5 141543049 141543174 -10994085 + (TG)n Simple_repeat Simple_repeat 1 125 0 1 1664 653 312 23 55 chr5 141543178 141543395 -10993864 - B4 SINE B4 0 292 83 1 1664 301 280 40 0 chr5 141543440 141543515 -10993744 - RSINE1 SINE B4 -59 106 29 1 1664 585 0 0 0 chr5 141543546 141543611 -10993648 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 1 1664 887 206 69 0 chr5 141543622 141543811 -10993448 - B3 SINE B2 -10 206 5 1 1664 301 271 2 26 chr5 141543811 141543913 -10993346 - B4 SINE B4 -191 101 3 1 1664 582 225 45 23 chr5 141543937 141544069 -10993190 - B1F1 SINE Alu -8 141 7 1 1664 1257 234 39 4 chr5 141544652 141544931 -10992328 - B4A SINE B4 -2 290 2 1 1664 475 247 0 0 chr5 141544965 141545054 -10992205 + RSINE1 SINE B4 3 91 -74 1 1664 2147 114 30 39 chr5 141545077 141545407 -10991852 - ORR1A2 LTR MaLR 0 327 1 1 1664 320 325 17 34 chr5 141545473 141545591 -10991668 + PB1D10 SINE Alu 1 116 -1 1 1664 764 271 38 38 chr5 141545593 141545831 -10991428 + B4A SINE B4 2 239 -53 1 1664 462 233 192 0 chr5 141545831 141545951 -10991308 + B1_Mus2 SINE Alu 2 144 -3 1 1664 251 106 0 41 chr5 141545968 141546017 -10991242 + (ATG)n Simple_repeat Simple_repeat 3 49 0 1 1664 1134 140 129 10 chr5 141546244 141546446 -10990813 - URR1A DNA MER1_type 0 226 1 1 1664 591 295 50 52 chr5 141546603 141546924 -10990335 - ORR1E LTR MaLR -2 357 1 1 1664 327 104 0 0 chr5 141547098 141547146 -10990113 + (TG)n Simple_repeat Simple_repeat 1 48 0 1 1664 418 364 7 13 chr5 141547167 141547320 -10989939 + B4A SINE B4 139 290 -2 1 1664 632 226 87 27 chr5 141547315 141547465 -10989794 + B4A SINE B4 134 292 0 1 1664 212 258 32 0 chr5 141547476 141547538 -10989721 + (CA)n Simple_repeat Simple_repeat 1 64 0 1 1664 210 71 0 0 chr5 141548094 141548122 -10989137 + (GGGAGA)n Simple_repeat Simple_repeat 1 28 0 1 1664 423 0 0 0 chr5 141548127 141548174 -10989085 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1664 189 0 0 0 chr5 141548174 141548194 -10989065 + (GA)n Simple_repeat Simple_repeat 2 22 0 1 1664 231 215 14 71 chr5 141548401 141548471 -10988788 - MLT1K LTR MaLR 0 595 530 1 1664 644 332 22 39 chr5 141548545 141548777 -10988482 + B4A SINE B4 1 228 -64 1 1664 466 229 28 37 chr5 141548776 141548885 -10988374 + B4A SINE B4 12 119 -173 1 1664 1149 241 37 30 chr5 141548882 141549102 -10988157 - MTD LTR MaLR -148 271 44 1 1664 4519 10 2 0 chr5 141549102 141549594 -10987665 - MT2_Mm LTR ERVL 0 493 1 1 1664 1149 241 37 30 chr5 141549594 141549642 -10987617 - MTD LTR MaLR -376 43 1 1 1664 275 300 0 35 chr5 141549925 141550039 -10987220 - MER97c DNA MER1_type? -354 736 627 1 1664 418 91 13 13 chr5 141550073 141550151 -10987108 + (TG)n Simple_repeat Simple_repeat 1 78 0 1 1664 479 228 97 0 chr5 141550170 141550284 -10986975 - RSINE1 SINE B4 -40 125 1 1 1664 1051 329 59 31 chr5 141550291 141550814 -10986445 - MER97c DNA MER1_type? -480 610 73 1 1664 1461 57 18 19 chr5 141550801 141551146 -10986113 + ZP3AR Satellite Satellite 1 344 -1 1 1664 272 279 50 187 chr5 141551033 141551231 -10986028 + ID_B1 SINE B4 1 171 -53 1 1664 234 278 109 22 chr5 141551166 141551258 -10986001 + PB1D9 SINE Alu 20 119 -1 1 1664 263 317 12 0 chr5 141552673 141552755 -10984504 - ID4 SINE ID 0 83 1 1 1664 1665 52 3 0 chr5 141552759 141553015 -10984244 - ZP3AR Satellite Satellite -174 256 1 1 1664 339 323 31 24 chr5 141553029 141553156 -10984103 - B1F SINE Alu 0 149 22 1 1664 391 257 27 80 chr5 141553244 141553483 -10983776 - L1MA4A LINE L1 -319 5978 5752 1 1664 652 209 16 0 chr5 141553543 141553672 -10983587 + B1F SINE Alu 12 142 -7 1 1664 234 0 0 0 chr5 141553753 141553779 -10983480 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1664 207 208 42 0 chr5 141553842 141553890 -10983369 + CT-rich Low_complexity Low_complexity 2 51 0 1 1664 271 242 152 0 chr5 141553922 141553988 -10983271 - ID_B1 SINE B4 0 224 149 1 1664 448 304 26 100 chr5 141554319 141554549 -10982710 - ID_B1 SINE B4 -10 214 2 1 1664 383 239 0 0 chr5 141554550 141554621 -10982638 - ID_B1 SINE B4 -67 157 87 1 1664 339 197 0 0 chr5 141555665 141555726 -10981533 - MTD LTR MaLR 0 419 359 1 1664 519 278 189 59 chr5 141555719 141555973 -10981286 + B4A SINE B4 6 292 0 1 1664 1077 105 0 0 chr5 141556062 141556224 -10981035 + (TCCC)n Simple_repeat Simple_repeat 1 162 0 1 1664 323 284 18 0 chr5 141556238 141556347 -10980912 + CT-rich Low_complexity Low_complexity 1 111 0 1 1664 280 258 16 0 chr5 141556347 141556409 -10980850 - B4 SINE B4 -228 64 2 1 1664 794 241 56 46 chr5 141556438 141556634 -10980625 + B3A SINE B2 1 198 0 1 1664 324 0 0 0 chr5 141557148 141557184 -10980075 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1664 816 261 10 31 chr5 141557188 141557382 -10979877 - B3A SINE B2 0 198 9 1 1664 1018 244 9 18 chr5 141557389 141557614 -10979645 - B4A SINE B4 -68 224 2 1 1665 797 259 45 5 chr5 141558491 141558708 -10978551 + B4A SINE B4 2 227 -65 1 1665 772 314 10 5 chr5 141558708 141558903 -10978356 + B3A SINE B2 1 196 -2 1 1665 297 266 0 37 chr5 141559071 141559091 -10978168 + B4A SINE B4 72 150 -142 1 1665 342 194 0 0 chr5 141559091 141559153 -10978106 + B1F1 SINE Alu 6 67 -82 1 1665 570 246 228 0 chr5 141559167 141559338 -10977921 + ID_B1 SINE B4 2 211 -13 1 1665 1545 17 0 0 chr5 141559344 141559524 -10977735 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1665 483 220 120 8 chr5 141559745 141559878 -10977381 + ORR1E LTR MaLR 22 169 -190 1 1665 668 268 134 68 chr5 141560181 141560517 -10976742 - ORR1E LTR MaLR -1 358 1 1 1665 186 133 0 0 chr5 141560828 141560858 -10976401 + (C)n Simple_repeat Simple_repeat 1 30 0 1 1665 185 0 0 39 chr5 141561461 141561487 -10975772 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 1 1665 186 103 0 0 chr5 141561814 141561843 -10975416 + (G)n Simple_repeat Simple_repeat 1 29 0 1 1665 239 271 43 0 chr5 141561886 141561956 -10975303 - MER74B LTR ERVL -197 425 353 1 1665 235 250 203 14 chr5 141561975 141562044 -10975215 - ID4 SINE ID -1 82 1 1 1665 390 288 222 17 chr5 141562132 141562312 -10974947 - RMER15 LTR ERVL 0 575 359 1 1665 387 286 0 0 chr5 141562312 141562490 -10974769 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1665 358 219 13 25 chr5 141562525 141562684 -10974575 + (CATATA)n Simple_repeat Simple_repeat 2 158 0 1 1665 410 193 28 34 chr5 141562719 141562896 -10974363 + (CATA)n Simple_repeat Simple_repeat 3 178 0 1 1665 1016 251 114 19 chr5 141563076 141563393 -10973866 - ORR1E LTR MaLR -2 357 11 1 1665 243 0 0 0 chr5 141563607 141563634 -10973625 + (T)n Simple_repeat Simple_repeat 1 27 0 1 1665 253 242 0 132 chr5 141563942 141564018 -10973241 + PB1D7 SINE Alu 48 113 -7 1 1665 1633 24 3 5 chr5 141563988 141564555 -10972704 + ZP3AR Satellite Satellite 1 565 0 1 1665 367 229 0 0 chr5 141564555 141564625 -10972634 + ID4 SINE ID 1 70 -13 1 1665 328 357 85 39 chr5 141564996 141565302 -10971957 - L1MC LINE L1 -2236 5646 5327 1 1665 206 238 0 23 chr5 141565332 141565375 -10971884 + MIRc SINE MIR 117 158 -110 1 1665 458 217 28 9 chr5 141565419 141565526 -10971733 + PB1D10 SINE Alu 9 117 0 1 1665 794 158 30 48 chr5 141565592 141565758 -10971501 - URR1A DNA MER1_type -5 221 59 1 1665 433 266 166 42 chr5 141565951 141566210 -10971049 + B4 SINE B4 2 292 0 2 1665 2385 179 34 50 chr5 141566389 141566441 -10970818 - RLTR20B3 LTR ERVK -42 535 483 2 1665 423 0 0 0 chr5 141566441 141566488 -10970771 + (CA)n Simple_repeat Simple_repeat 2 48 0 2 1665 2385 179 34 50 chr5 141566488 141566958 -10970301 - RLTR20B3 LTR ERVK -95 482 23 2 1665 674 277 61 68 chr5 141567149 141567443 -10969816 - B4 SINE B4 0 292 1 2 1665 317 292 75 0 chr5 141567478 141567584 -10969675 - ID_B1 SINE B4 -8 216 103 2 1665 316 287 121 16 chr5 141567584 141567602 -10969657 - B1F SINE Alu -8 141 5 2 1665 33 25 0 0 chr5 141568086 141568126 -10969133 + AT_rich Low_complexity Low_complexity 1 40 0 2 1665 557 258 231 18 chr5 141568323 141568548 -10968711 + B4A SINE B4 1 273 -19 2 1665 1624 22 11 3 chr5 141569112 141569489 -10967770 + ZP3AR Satellite Satellite 1 380 0 2 1665 259 197 10 216 chr5 141569431 141569528 -10967731 + ID4 SINE ID 1 77 -6 2 1665 462 269 0 0 chr5 141569994 141570098 -10967161 + B4A SINE B4 2 105 -187 2 1665 312 239 14 14 chr5 141570100 141570172 -10967087 - ID SINE ID -151 73 2 2 1665 4566 36 0 0 chr5 141570447 141570973 -10966286 - L1Md_T LINE L1 0 6582 6057 2 1665 5146 23 0 0 chr5 141570973 141571775 -10965484 + L1Md_A LINE L1 5272 6073 -509 2 1665 329 283 9 0 chr5 141572047 141572153 -10965106 + (TATG)n Simple_repeat Simple_repeat 2 108 0 2 1665 322 211 11 39 chr5 141572154 141572222 -10965037 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1665 393 75 0 0 chr5 141572222 141572275 -10964984 + (TA)n Simple_repeat Simple_repeat 2 54 0 2 1665 322 211 11 39 chr5 141572275 141572388 -10964871 + (TG)n Simple_repeat Simple_repeat 2 110 0 2 1665 349 237 241 29 chr5 141572403 141572454 -10964805 - B4A SINE B4 0 292 225 2 1665 727 259 77 62 chr5 141572454 141572726 -10964533 - B4A SINE B4 -16 276 1 2 1665 634 211 18 0 chr5 141572729 141572838 -10964421 - PB1D10 SINE Alu 0 117 7 2 1665 918 275 139 36 chr5 141573199 141573501 -10963758 - MTE2a LTR MaLR -46 333 1 2 1665 221 338 0 24 chr5 141574288 141574370 -10962889 - ID4_ SINE ID -3 80 1 2 1665 1660 68 5 0 chr5 141574346 141574738 -10962521 - ZP3AR Satellite Satellite -93 393 1 2 1665 203 250 0 0 chr5 141574766 141574810 -10962449 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1665 677 283 11 37 chr5 141574812 141574999 -10962260 - B3A SINE B2 -16 182 1 2 1665 272 265 118 39 chr5 141575009 141575111 -10962148 - B1F SINE Alu -8 141 32 2 1665 393 75 0 0 chr5 141575505 141575558 -10961701 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 1665 305 311 11 0 chr5 141575874 141575964 -10961295 + B1F SINE Alu 1 91 -58 2 1665 595 120 9 9 chr5 141576030 141576139 -10961120 + (GGGA)n Simple_repeat Simple_repeat 3 111 0 2 1665 411 187 0 0 chr5 141576403 141576510 -10960749 + CT-rich Low_complexity Low_complexity 1 107 0 2 1665 360 0 0 0 chr5 141576519 141576559 -10960700 + (CA)n Simple_repeat Simple_repeat 2 41 0 2 1665 420 238 45 5 chr5 141577055 141577185 -10960074 + B1F SINE Alu 6 146 -1 2 1665 249 33 0 0 chr5 141577199 141577229 -10960030 + (CAAT)n Simple_repeat Simple_repeat 1 30 0 2 1665 838 281 50 21 chr5 141577229 141577509 -10959750 + B4A SINE B4 3 290 -2 2 1665 379 61 30 15 chr5 141577559 141577626 -10959633 + (CATA)n Simple_repeat Simple_repeat 3 70 0 2 1665 339 130 0 0 chr5 141577916 141577970 -10959289 + (TG)n Simple_repeat Simple_repeat 2 55 0 2 1665 251 257 25 75 chr5 141577992 141578072 -10959187 + ID4 SINE ID 4 79 -4 2 1665 312 312 121 14 chr5 141578074 141578214 -10959045 + HAL1-3A_ME LINE L1 2284 2438 -420 2 1665 222 152 16 33 chr5 141578244 141578305 -10958954 + GA-rich Low_complexity Low_complexity 5 64 0 2 1665 1070 245 45 12 chr5 141578776 141579027 -10958232 + ZP3AR Satellite Satellite 1 259 -5 2 1665 257 358 92 7 chr5 141579218 141579370 -10957889 + MER74A LTR ERVL 309 473 -85 2 1665 456 163 0 0 chr5 141579376 141579462 -10957797 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 1665 236 343 19 10 chr5 141579482 141579585 -10957674 - RMER15 LTR ERVL -129 446 343 2 1665 256 238 262 0 chr5 141579796 141579876 -10957383 - B1F1 SINE Alu -46 103 3 2 1665 312 102 0 0 chr5 141580044 141580093 -10957166 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1665 470 237 40 30 chr5 141580096 141580196 -10957063 - RSINE1 SINE B4 -13 152 52 2 1665 8590 39 3 3 chr5 141580207 141582012 -10955247 - L1Md_F3 LINE L1 -2 6582 4778 2 1665 235 330 0 84 chr5 141582091 141582210 -10955049 - Charlie1 DNA MER1_type -2074 707 599 2 1665 833 258 35 10 chr5 141582334 141582534 -10954725 - ID_B1 SINE B4 -18 206 2 2 1665 1200 261 14 44 chr5 141582612 141582908 -10954351 - B4 SINE B4 -4 288 2 2 1665 256 60 19 39 chr5 141582965 141583017 -10954242 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 2 1665 1007 277 39 29 chr5 141583427 141583686 -10953573 + B4 SINE B4 8 273 -19 2 1665 330 87 0 0 chr5 141583686 141583732 -10953527 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1665 1007 277 39 29 chr5 141583732 141583751 -10953508 + B4 SINE B4 274 289 -3 2 1665 808 257 58 27 chr5 141583790 141584050 -10953209 - B4A SINE B4 -23 269 2 2 1665 401 394 0 0 chr5 141584125 141584305 -10952954 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1665 228 244 11 51 chr5 141584329 141584409 -10952850 + (TATG)n Simple_repeat Simple_repeat 3 82 0 2 1665 1774 137 21 71 chr5 141584409 141584748 -10952511 + RLTRETN_Mm LTR ERVK 1 322 0 2 1665 228 244 11 51 chr5 141584748 141584844 -10952415 + (TATG)n Simple_repeat Simple_repeat 1 90 0 2 1665 774 286 78 59 chr5 141584855 141585111 -10952148 - B4 SINE B4 0 292 32 2 1665 843 275 5 14 chr5 141586634 141586844 -10950415 + B4A SINE B4 2 209 -83 2 1665 418 218 0 22 chr5 141586850 141586939 -10950320 - ORR1E LTR MaLR -4 375 289 2 1665 1012 209 77 133 chr5 141586961 141587336 -10949923 - ORR1D2 LTR MaLR -12 358 5 2 1665 695 250 178 24 chr5 141587335 141587548 -10949711 - ORR1E LTR MaLR -113 246 1 2 1665 1095 242 80 111 chr5 141587554 141587940 -10949319 - MTE2a LTR MaLR -1 378 5 2 1665 366 23 0 0 chr5 141588020 141588063 -10949196 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1665 1253 279 60 55 chr5 141588921 141589338 -10947921 + MTD LTR MaLR 1 419 0 2 1665 252 0 0 0 chr5 141589573 141589601 -10947658 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1665 255 342 0 14 chr5 141589924 141589998 -10947261 - ID4_ SINE ID -4 79 7 2 1665 446 185 12 12 chr5 141590139 141590221 -10947038 - PB1D10 SINE Alu -18 99 18 2 1665 383 240 97 29 chr5 141590221 141590239 -10947020 - ID_B1 SINE B4 -41 180 74 2 1665 370 307 70 25 chr5 141590563 141590720 -10946539 + RSINE1 SINE B4 2 165 0 2 1665 352 208 131 2 chr5 141590928 141591025 -10946234 + PB1 SINE Alu 16 125 -2 2 1665 1426 107 19 5 chr5 141591032 141591298 -10945961 + ZP3AR Satellite Satellite 1 269 -1 2 1665 275 194 16 31 chr5 141591245 141591309 -10945950 + ID2 SINE ID 1 63 -20 2 1665 223 368 0 0 chr5 141591384 141591452 -10945807 + G-rich Low_complexity Low_complexity 1 68 0 2 1665 534 220 33 33 chr5 141592529 141592651 -10944608 + B1F SINE Alu 28 149 0 2 1665 1595 61 0 0 chr5 141592744 141592953 -10944306 - ZP3AR Satellite Satellite -11 209 1 2 1665 285 331 60 23 chr5 141592977 141593110 -10944149 - B1F SINE Alu -11 138 1 2 1665 328 309 0 0 chr5 141593559 141593653 -10943606 + L1_Mur3 LINE L1 1942 2035 -3845 2 1665 432 0 0 0 chr5 141593682 141593730 -10943529 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1665 359 269 27 27 chr5 141594647 141594758 -10942501 + MER117 DNA MER1_type 48 158 -39 2 1665 231 330 73 21 chr5 141594754 141594771 -10942488 - B1_Mur1 SINE Alu -17 132 32 2 1665 382 234 0 25 chr5 141594771 141594850 -10942409 - ID_B1 SINE B4 -35 189 113 2 1665 333 0 0 0 chr5 141594871 141594908 -10942351 + (TCTG)n Simple_repeat Simple_repeat 3 39 0 2 1665 495 0 0 0 chr5 141594915 141594970 -10942289 + (TC)n Simple_repeat Simple_repeat 2 56 0 2 1665 335 304 146 49 chr5 141595019 141595265 -10941994 - B4A SINE B4 -22 270 1 2 1665 730 284 46 37 chr5 141595265 141595495 -10941764 - B4A SINE B4 -60 232 1 2 1665 723 277 80 40 chr5 141595654 141595929 -10941330 + B4 SINE B4 2 287 -5 2 1665 369 0 0 0 chr5 141596390 141596431 -10940828 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1665 279 0 0 0 chr5 141596431 141596461 -10940798 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 1665 408 253 77 0 chr5 141597088 141597179 -10940080 + MTE2b LTR MaLR 1 98 -281 2 1665 929 232 27 11 chr5 141597179 141597366 -10939893 + MTE2b LTR MaLR 58 247 -132 2 1665 291 191 31 16 chr5 141597350 141597414 -10939845 - B4A SINE B4 -55 237 173 2 1665 1165 56 0 0 chr5 141597565 141597707 -10939552 + B1_Mus1 SINE Alu 2 143 -5 2 1665 190 196 79 111 chr5 141597963 141598026 -10939233 + L2c LINE L2 3308 3380 -7 2 1665 645 178 0 0 chr5 141598256 141598408 -10938851 + (TG)n Simple_repeat Simple_repeat 2 153 0 2 1665 363 230 0 0 chr5 141598427 141598566 -10938693 + (TG)n Simple_repeat Simple_repeat 2 140 0 2 1665 234 231 0 0 chr5 141598595 141598686 -10938573 + (TG)n Simple_repeat Simple_repeat 2 92 0 2 1665 395 220 6 0 chr5 141598697 141598865 -10938394 + (TG)n Simple_repeat Simple_repeat 2 170 0 2 1665 323 303 145 67 chr5 141598894 141599163 -10938096 - B4 SINE B4 0 292 3 2 1665 22 0 0 0 chr5 141599295 141599317 -10937942 + GC_rich Low_complexity Low_complexity 1 22 0 2 1665 241 272 65 0 chr5 141599895 141599987 -10937272 - MLT1B LTR MaLR -288 102 5 2 1665 515 105 35 0 chr5 141601097 141601183 -10936076 + (TCTCCC)n Simple_repeat Simple_repeat 2 90 0 2 1665 798 185 14 20 chr5 141601301 141601494 -10935765 + ZP3AR Satellite Satellite 1 191 -1 2 1665 432 0 0 0 chr5 141602350 141602398 -10934861 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1665 982 281 11 48 chr5 141602423 141602692 -10934567 - B4A SINE B4 -12 280 22 3 1665 524 297 149 48 chr5 141602723 141603394 -10933865 - L1MDa LINE L1 -4703 1930 1192 3 1665 504 0 0 0 chr5 141603395 141603451 -10933808 + (TG)n Simple_repeat Simple_repeat 1 56 0 3 1665 541 329 64 75 chr5 141603452 141603718 -10933541 - B4 SINE B4 -23 269 7 3 1665 384 286 90 58 chr5 141603724 141603913 -10933346 - L1MDa LINE L1 -5331 1209 1015 3 1665 307 194 21 0 chr5 141604266 141604359 -10932900 + (TG)n Simple_repeat Simple_repeat 2 96 0 3 1665 388 329 6 23 chr5 141604367 141604538 -10932721 + (TATG)n Simple_repeat Simple_repeat 4 171 0 3 1665 429 292 48 66 chr5 141604540 141604767 -10932492 + RMER12 LTR ERVK 770 992 -330 3 1665 471 214 73 21 chr5 141604748 141604894 -10932365 - B4 SINE B4 -13 279 82 3 1665 228 330 69 69 chr5 141605006 141605208 -10932051 - Tigger5 DNA MER2_type -1870 536 335 3 1665 237 284 26 26 chr5 141605261 141605337 -10931922 - ID_B1 SINE B4 -86 138 63 3 1665 291 114 0 0 chr5 141605598 141605642 -10931617 + (ATGGTG)n Simple_repeat Simple_repeat 5 48 0 3 1665 890 273 9 27 chr5 141606037 141606259 -10931000 + B4A SINE B4 69 286 -6 3 1665 303 278 0 17 chr5 141606281 141606460 -10930799 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 1665 192 200 0 0 chr5 141606534 141606584 -10930675 + (CATG)n Simple_repeat Simple_repeat 1 50 0 3 1665 381 167 0 0 chr5 141606598 141606676 -10930583 + (TG)n Simple_repeat Simple_repeat 1 78 0 3 1665 890 232 117 26 chr5 141606676 141606942 -10930317 - B4A SINE B4 0 292 3 3 1665 329 280 90 0 chr5 141606994 141607094 -10930165 - PB1D10 SINE Alu -7 110 2 3 1665 405 0 0 0 chr5 141607264 141607309 -10929950 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1665 1047 242 73 15 chr5 141607338 141607598 -10929661 - B4A SINE B4 -4 288 14 3 1665 732 195 30 75 chr5 141607819 141608019 -10929240 - Charlie19a DNA Charlie -80 306 116 3 1665 375 280 0 0 chr5 141608255 141608398 -10928861 + (TG)n Simple_repeat Simple_repeat 1 143 0 3 1665 768 269 6 6 chr5 141608418 141608590 -10928669 - B4A SINE B4 -8 284 113 3 1665 617 181 8 0 chr5 141608599 141608732 -10928527 + (CA)n Simple_repeat Simple_repeat 1 134 0 3 1665 326 305 56 19 chr5 141609013 141609120 -10928139 - ORR1E LTR MaLR -4 355 245 3 1665 305 284 0 26 chr5 141609095 141609171 -10928088 + RMER30 DNA MER1_type 8 81 -121 3 1665 225 319 33 66 chr5 141609302 141609423 -10927836 - PB1D9 SINE Alu -3 117 1 3 1665 587 267 47 24 chr5 141609423 141609506 -10927753 - B4A SINE B4 -202 90 4 3 1665 270 169 0 0 chr5 141609644 141609709 -10927550 + GA-rich Low_complexity Low_complexity 2 66 0 3 1665 337 323 65 92 chr5 141609712 141609896 -10927363 - ORR1E LTR MaLR -185 189 11 3 1665 500 243 9 36 chr5 141610081 141610192 -10927067 + B4 SINE B4 29 136 -156 3 1665 333 294 57 25 chr5 141611343 141611500 -10925759 - MER92B LTR ERV1 -112 524 363 3 1665 1383 159 0 35 chr5 141611656 141611884 -10925375 + URR1B DNA MER1_type 5 224 -1 3 1665 261 0 0 0 chr5 141611909 141611938 -10925321 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1665 213 257 151 50 chr5 141612291 141612410 -10924849 - MIR SINE MIR -119 143 13 3 1665 335 294 0 0 chr5 141612585 141612670 -10924589 + B4 SINE B4 2 86 -206 3 1665 197 98 0 24 chr5 141612670 141612712 -10924547 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 3 1665 590 291 58 39 chr5 141612712 141612919 -10924340 + B4 SINE B4 82 292 0 3 1665 405 288 76 0 chr5 141613208 141613326 -10923933 + ID_B1 SINE B4 78 204 -20 3 1665 214 167 48 0 chr5 141613598 141613640 -10923619 + CT-rich Low_complexity Low_complexity 4 47 0 3 1665 421 252 18 0 chr5 141613934 141614045 -10923214 + PB1D10 SINE Alu 2 114 -3 3 1665 261 257 33 111 chr5 141614116 141614269 -10922990 + B1F1 SINE Alu 1 141 -8 3 1665 882 92 0 21 chr5 141614275 141614419 -10922840 + ZP3AR Satellite Satellite 38 178 -34 3 1665 209 140 0 23 chr5 141614444 141614488 -10922771 + GA-rich Low_complexity Low_complexity 2 44 0 3 1665 309 340 38 19 chr5 141614528 141614687 -10922572 + MIRb SINE MIR 59 220 -48 3 1665 729 256 77 84 chr5 141615745 141616031 -10921228 + B4 SINE B4 7 290 -2 3 1665 272 222 0 32 chr5 141616032 141616125 -10921134 + (CA)n Simple_repeat Simple_repeat 2 91 0 3 1665 401 352 6 11 chr5 141616169 141616347 -10920912 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 1665 345 167 33 22 chr5 141616388 141616480 -10920779 + (CATA)n Simple_repeat Simple_repeat 2 94 0 3 1665 207 0 0 0 chr5 141616530 141616553 -10920706 + (TGG)n Simple_repeat Simple_repeat 1 23 0 3 1665 288 207 264 0 chr5 141616691 141616778 -10920481 + PB1D10 SINE Alu 1 110 -7 3 1665 189 0 0 0 chr5 141617215 141617236 -10920023 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3 1665 572 291 98 8 chr5 141617301 141617557 -10919702 + B4A SINE B4 2 280 -12 3 1665 505 148 0 0 chr5 141617726 141617807 -10919452 - B1_Mur4 SINE Alu -1 149 69 3 1665 1010 257 91 112 chr5 141617828 141618533 -10918726 - RMER13B LTR ERVK -10 898 276 3 1665 278 238 11 140 chr5 141618523 141618616 -10918643 - RSINE1 SINE B4 -81 84 4 3 1665 306 78 53 43 chr5 141618648 141618742 -10918517 + (CAAA)n Simple_repeat Simple_repeat 2 96 0 3 1665 370 231 43 0 chr5 141619507 141619718 -10917541 + CT-rich Low_complexity Low_complexity 1 220 0 3 1665 4224 114 40 13 chr5 141619742 141620365 -10916894 + L1VL4 LINE L1 194 833 -5469 3 1665 10852 60 1 22 chr5 141620365 141620917 -10916342 + L1Md_F2 LINE L1 4211 4737 -1146 3 1665 207 0 0 0 chr5 141620917 141620940 -10916319 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3 1665 10852 60 1 22 chr5 141620940 141621792 -10915467 + L1Md_F2 LINE L1 4738 5586 -297 3 1665 7943 51 12 17 chr5 141621793 141622793 -10914466 + L1Md_F2 LINE L1 5588 6582 0 3 1665 2303 58 15 0 chr5 141622793 141623131 -10914128 + MusHAL1 LINE L1 616 957 -2396 3 1665 21762 143 25 8 chr5 141623116 141627725 -10909534 + Lx2 LINE L1 1961 6648 -349 3 1665 1410 121 0 5 chr5 141627720 141627928 -10909331 + Lx2 LINE L1 6775 6981 -16 3 1665 683 266 102 24 chr5 141627928 141628017 -10909242 - MTE2a LTR MaLR -49 351 231 3 1665 396 0 0 0 chr5 141628017 141628061 -10909198 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 3 1665 683 269 87 29 chr5 141628061 141628282 -10908977 - MTE2a LTR MaLR -186 235 26 3 1665 358 273 16 24 chr5 141628283 141628407 -10908852 + CT-rich Low_complexity Low_complexity 3 125 0 3 1665 724 239 86 8 chr5 141628676 141628921 -10908338 - L1MCb LINE L1 -4627 2124 1861 3 1665 739 291 77 0 chr5 141628946 141629207 -10908052 - B4 SINE B4 -5 287 7 3 1665 1584 309 46 42 chr5 141629214 141630376 -10906883 - L1MCb LINE L1 -4936 1815 577 3 1665 803 300 79 8 chr5 141630544 141630796 -10906463 + B4 SINE B4 21 290 -2 3 1665 299 323 0 10 chr5 141630805 141630902 -10906357 + (CACG)n Simple_repeat Simple_repeat 4 99 0 3 1665 441 54 0 0 chr5 141630911 141630967 -10906292 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 1665 789 263 49 148 chr5 141631185 141631591 -10905668 + MTE2a LTR MaLR 14 379 0 3 1665 255 322 0 0 chr5 141631810 141631869 -10905390 - RSINE1 SINE B4 0 165 107 3 1665 510 268 0 26 chr5 141632014 141632129 -10905130 + PB1D10 SINE Alu 5 116 -1 3 1665 302 93 105 53 chr5 141632336 141632393 -10904866 + HAL1-3A_ME LINE L1 1959 2018 -840 3 1665 246 176 0 0 chr5 141632394 141632445 -10904814 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1665 305 73 0 0 chr5 141632447 141632488 -10904771 + HAL1-3A_ME LINE L1 1977 2017 -841 3 1665 669 202 12 0 chr5 141632488 141632824 -10904435 + (CA)n Simple_repeat Simple_repeat 1 340 0 3 1665 698 218 4 0 chr5 141632853 141633097 -10904162 + (CA)n Simple_repeat Simple_repeat 1 245 0 3 1665 353 62 0 0 chr5 141633097 141633145 -10904114 + HAL1-3A_ME LINE L1 1976 2023 -835 3 1665 230 271 0 0 chr5 141633170 141633218 -10904041 + Alu SINE Alu 28 75 -100 3 1665 548 245 28 21 chr5 141633497 141633639 -10903620 - RSINE1 SINE B4 -19 146 4 3 1665 727 262 47 0 chr5 141633779 141633951 -10903308 - B3A SINE B2 -18 180 1 3 1665 268 109 41 22 chr5 141633954 141634018 -10903241 - B1F SINE Alu 0 149 53 3 1665 369 293 47 111 chr5 141634059 141634312 -10902947 - L1MDa LINE L1 -4973 1660 1424 3 1665 339 264 0 21 chr5 141634314 141634328 -10902931 - B1F SINE Alu 0 149 137 3 1665 198 0 0 0 chr5 141634328 141634350 -10902909 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 3 1665 339 264 0 21 chr5 141634350 141634428 -10902831 - B1F SINE Alu -13 136 59 3 1665 378 276 66 4 chr5 141634501 141634711 -10902548 - L1MDa LINE L1 -5216 1417 1191 3 1665 299 89 0 0 chr5 141634858 141634903 -10902356 - L1VL1 LINE L1 -5368 1054 1010 3 1665 8163 51 7 11 chr5 141634902 141636025 -10901234 + L1_Mus2 LINE L1 5448 6566 0 3 1665 293 262 173 10 chr5 141636050 141636154 -10901105 + RSINE1 SINE B4 21 141 -24 3 1665 414 0 0 0 chr5 141636154 141636200 -10901059 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 1665 243 0 0 0 chr5 141636727 141636754 -10900505 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1665 278 406 0 0 chr5 141637993 141638136 -10899123 + (TATATG)n Simple_repeat Simple_repeat 5 147 0 3 1665 314 302 0 23 chr5 141638039 141638127 -10899132 + (CATATA)n Simple_repeat Simple_repeat 6 91 0 3 1665 863 273 9 24 chr5 141638213 141638423 -10898836 - MTE2a LTR MaLR -154 225 19 3 1665 395 283 66 8 chr5 141638461 141638582 -10898677 - B1F2 SINE Alu -12 137 10 3 1665 351 302 29 73 chr5 141638590 141638726 -10898533 - MTEa LTR MaLR -200 179 50 3 1665 218 325 37 12 chr5 141638808 141638889 -10898370 - RSINE1 SINE B4 0 165 83 3 1665 213 339 30 104 chr5 141638921 141639056 -10898203 - B4A SINE B4 -122 170 46 3 1665 1314 126 0 0 chr5 141639092 141639283 -10897976 - B2_Mm2 SINE B2 -4 191 1 3 1665 622 253 38 0 chr5 141639714 141639872 -10897387 + RSINE1 SINE B4 2 165 0 3 1665 255 292 0 0 chr5 141639972 141640078 -10897181 + (CA)n Simple_repeat Simple_repeat 1 106 0 3 1665 405 0 0 0 chr5 141640135 141640180 -10897079 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1665 183 80 0 0 chr5 141640282 141640307 -10896952 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1665 423 0 0 0 chr5 141640308 141640355 -10896904 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1665 670 232 67 57 chr5 141640568 141640778 -10896481 - ID_B1 SINE B4 -8 216 5 3 1665 1691 114 136 35 chr5 141640919 141641265 -10895994 + ORR1B1 LTR MaLR 6 386 -8 3 1665 291 247 41 51 chr5 141641945 141642043 -10895216 - PB1D10 SINE Alu 0 117 21 3 1665 476 298 22 60 chr5 141642072 141642254 -10895005 + B4A SINE B4 1 175 -117 4 1665 357 271 117 50 chr5 141642345 141642524 -10894735 - MTEa LTR MaLR 0 379 189 4 1665 245 29 0 29 chr5 141642562 141642597 -10894662 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 4 1665 1015 106 7 0 chr5 141642670 141642812 -10894447 + B1_Mus1 SINE Alu 5 147 -1 4 1665 425 155 4 9 chr5 141642872 141642956 -10894303 + B3A SINE B2 3 82 -111 4 1665 432 0 0 0 chr5 141643004 141643052 -10894207 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1665 369 0 0 0 chr5 141643052 141643092 -10894167 + (GA)n Simple_repeat Simple_repeat 2 42 0 4 1665 261 327 6 45 chr5 141643160 141643317 -10893942 + L1MD LINE L1 3200 3350 -2796 4 1665 304 248 37 165 chr5 141643319 141643341 -10893918 + ID_B1 SINE B4 80 222 -2 4 1665 402 168 78 162 chr5 141643341 141643483 -10893776 + B1F SINE Alu 20 149 0 4 1665 255 244 0 0 chr5 141643538 141643616 -10893643 + (TG)n Simple_repeat Simple_repeat 1 78 0 4 1665 796 272 122 51 chr5 141643688 141644099 -10893160 + L1MD LINE L1 3409 3848 -2298 4 1665 390 191 94 21 chr5 141644127 141644223 -10893036 + B1F2 SINE Alu 47 149 0 4 1665 300 176 29 14 chr5 141644308 141644377 -10892882 - PB1D9 SINE Alu -1 119 50 4 1665 976 244 38 11 chr5 141644547 141644808 -10892451 + MTEb LTR MaLR 1 268 -111 4 1665 369 0 0 0 chr5 141644827 141644868 -10892391 + (T)n Simple_repeat Simple_repeat 1 41 0 4 1665 346 299 85 57 chr5 141645257 141645505 -10891754 + L1M5 LINE L1 5406 5660 -580 4 1665 28 0 0 0 chr5 141645728 141645756 -10891503 + AT_rich Low_complexity Low_complexity 1 28 0 4 1665 924 242 6 0 chr5 141645776 141645954 -10891305 - B3A SINE B2 -18 180 2 4 1665 364 163 0 55 chr5 141646274 141646365 -10890894 + Lx3C LINE L1 6890 6975 -1 4 1665 228 111 0 0 chr5 141646550 141646586 -10890673 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1665 678 25 0 0 chr5 141646660 141646740 -10890519 + (TA)n Simple_repeat Simple_repeat 2 81 0 4 1665 258 32 0 0 chr5 141646937 141646968 -10890291 + (TCC)n Simple_repeat Simple_repeat 2 32 0 4 1665 235 279 16 0 chr5 141646972 141647033 -10890226 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1665 822 290 28 35 chr5 141647033 141647322 -10889937 - B4A SINE B4 -3 289 3 4 1665 324 313 178 1 chr5 141647327 141647538 -10889721 + MLT1H1 LTR MaLR 24 272 -283 4 1665 223 152 33 17 chr5 141647593 141647653 -10889606 + (ATGGTG)n Simple_repeat Simple_repeat 5 65 0 4 1665 201 260 25 38 chr5 141647671 141647751 -10889508 + (ATGGTG)n Simple_repeat Simple_repeat 1 79 0 4 1665 429 318 36 21 chr5 141647810 141648003 -10889256 + MLT1H1 LTR MaLR 346 541 -14 4 1665 1067 222 5 0 chr5 141648477 141648675 -10888584 + B3 SINE B2 1 199 -17 4 1665 294 263 98 79 chr5 141648835 141649112 -10888147 - B4A SINE B4 -8 284 3 4 1665 1260 79 0 0 chr5 141649123 141649301 -10887958 + (TG)n Simple_repeat Simple_repeat 1 178 0 4 1665 337 262 41 4 chr5 141649303 141649411 -10887848 - B1F SINE Alu -14 134 26 4 1665 227 148 0 36 chr5 141649452 141649508 -10887751 + CT-rich Low_complexity Low_complexity 4 57 0 4 1665 217 276 43 39 chr5 141649531 141649662 -10887597 - PB1D7 SINE Alu -20 129 1 4 1665 308 292 52 0 chr5 141649828 141649924 -10887335 + PB1D7 SINE Alu 3 103 -17 4 1665 687 225 35 2 chr5 141650093 141650256 -10887003 - B3A SINE B2 -19 179 11 4 1665 369 0 0 0 chr5 141650881 141650922 -10886337 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 4 1665 521 208 75 139 chr5 141650930 141651103 -10886156 - RSINE1 SINE B4 -2 163 2 4 1665 353 270 123 7 chr5 141651158 141651296 -10885963 - MIRm SINE MIR -99 177 24 4 1665 959 288 48 4 chr5 141651343 141651611 -10885648 - B4A SINE B4 -12 280 1 4 1665 233 363 20 0 chr5 141651636 141651738 -10885521 - MIRc SINE MIR -119 149 46 4 1665 241 270 40 0 chr5 141652447 141652521 -10884738 + RMER15 LTR ERVL 434 510 -65 4 1665 1542 153 126 30 chr5 141653131 141653503 -10883756 - ORR1B2 LTR MaLR 0 370 2 4 1665 309 296 73 15 chr5 141653596 141653733 -10883526 + L1MB5 LINE L1 5772 5916 -258 4 1665 1119 252 41 19 chr5 141653743 141654058 -10883201 + MTE2b LTR MaLR 19 340 -39 4 1665 729 216 58 12 chr5 141654088 141654261 -10882998 - B3 SINE B2 -34 182 2 4 1665 252 0 0 0 chr5 141654283 141654311 -10882948 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1665 223 303 30 0 chr5 141654404 141654470 -10882789 + ID4_ SINE ID 12 79 -4 4 1665 327 203 0 63 chr5 141654536 141654615 -10882644 + L1MB5 LINE L1 6062 6135 -39 4 1665 397 291 134 0 chr5 141654621 141654748 -10882511 + RSINE1 SINE B4 2 145 -20 4 1665 22 0 0 0 chr5 141654801 141654823 -10882436 + AT_rich Low_complexity Low_complexity 1 22 0 4 1665 756 269 55 46 chr5 141654848 141655086 -10882173 + B4 SINE B4 50 289 -3 4 1665 921 287 35 0 chr5 141656147 141656401 -10880858 - B4A SINE B4 -13 279 17 4 1665 464 274 42 8 chr5 141656446 141656564 -10880695 + B3A SINE B2 2 123 -75 4 1665 486 0 0 0 chr5 141656565 141656619 -10880640 + (CA)n Simple_repeat Simple_repeat 2 55 0 4 1665 235 372 65 33 chr5 141657111 141657264 -10879995 - MIRc SINE MIR -65 203 46 4 1665 856 272 15 0 chr5 141657354 141657560 -10879699 + ID_B1 SINE B4 11 219 -5 4 1665 641 269 6 59 chr5 141657601 141657726 -10879533 + RSINE1 SINE B4 3 125 -40 4 1665 321 26 0 0 chr5 141657726 141657764 -10879495 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1665 641 269 6 59 chr5 141657764 141657808 -10879451 + RSINE1 SINE B4 126 163 -2 4 1665 362 248 143 0 chr5 141657868 141657973 -10879286 + ID_B1 SINE B4 104 223 -1 4 1665 1669 198 123 3 chr5 141658016 141658390 -10878869 - MTD LTR MaLR 0 419 1 4 1665 486 0 0 0 chr5 141658837 141658891 -10878368 + (TC)n Simple_repeat Simple_repeat 2 55 0 4 1665 839 10 0 10 chr5 141658891 141658992 -10878267 + (TTCC)n Simple_repeat Simple_repeat 2 101 0 4 1665 455 112 0 12 chr5 141659858 141659939 -10877320 + (TG)n Simple_repeat Simple_repeat 1 80 0 4 1665 986 238 32 58 chr5 141659974 141660251 -10877008 - B4 SINE B4 -20 272 3 4 1665 315 339 0 8 chr5 141660485 141660604 -10876655 + ID_B1 SINE B4 99 216 -8 4 1665 1454 88 9 2 chr5 141660620 141661018 -10876241 + ZP3AR Satellite Satellite 1 400 -107 4 1665 320 257 52 160 chr5 141660931 141661181 -10876078 + ID_B1 SINE B4 1 223 -1 4 1665 321 197 0 0 chr5 141661202 141661268 -10875991 + (CGA)n Simple_repeat Simple_repeat 2 67 0 4 1665 499 319 14 0 chr5 141661306 141661444 -10875815 + RSINE1 SINE B4 13 152 -13 4 1665 697 266 79 0 chr5 141662140 141662354 -10874905 + B4A SINE B4 44 274 -18 4 1665 874 97 22 22 chr5 141662357 141662536 -10874723 + (GA)n Simple_repeat Simple_repeat 2 180 0 4 1665 284 270 21 82 chr5 141662743 141662840 -10874419 + PB1D10 SINE Alu 9 99 -18 4 1665 558 0 0 0 chr5 141662840 141662902 -10874357 + (TG)n Simple_repeat Simple_repeat 1 62 0 4 1665 574 305 15 41 chr5 141662913 141662945 -10874314 - B4A SINE B4 -19 273 243 4 1665 1801 195 46 19 chr5 141662945 141663317 -10873942 - ORR1C2 LTR MaLR -2 382 1 4 1665 574 305 15 41 chr5 141663317 141663479 -10873780 - B4A SINE B4 -50 242 85 4 1665 241 204 0 20 chr5 141663483 141663533 -10873726 + (TATG)n Simple_repeat Simple_repeat 2 50 0 4 1665 440 181 0 8 chr5 141663543 141663671 -10873588 + (TG)n Simple_repeat Simple_repeat 1 127 0 4 1665 584 282 78 39 chr5 141663671 141663926 -10873333 - B4A SINE B4 0 292 28 4 1665 215 238 148 45 chr5 141664172 141664260 -10872999 - L2a LINE L2 0 3426 3330 4 1665 384 275 0 0 chr5 141664369 141664449 -10872810 + PB1 SINE Alu 23 102 -25 4 1665 519 17 0 0 chr5 141664456 141664516 -10872743 + (TG)n Simple_repeat Simple_repeat 1 60 0 4 1665 369 0 0 0 chr5 141664516 141664556 -10872703 + (GA)n Simple_repeat Simple_repeat 1 41 0 4 1665 353 277 32 11 chr5 141664741 141664836 -10872423 - PB1D7 SINE Alu -7 113 17 4 1665 357 82 0 0 chr5 141664886 141664935 -10872324 + (TCC)n Simple_repeat Simple_repeat 1 49 0 4 1665 771 244 115 35 chr5 141665018 141665218 -10872041 - B3 SINE B2 0 216 1 4 1665 845 205 112 54 chr5 141665349 141665591 -10871668 - MTE2a LTR MaLR -14 365 110 4 1665 437 233 6 175 chr5 141665833 141666010 -10871249 - MTE2a LTR MaLR -232 147 1 4 1665 528 276 248 0 chr5 141666072 141666326 -10870933 + RCHARR1 DNA MER1_type 133 449 -525 4 1665 324 291 74 4 chr5 141666326 141666442 -10870817 + B4A SINE B4 1 117 -175 4 1665 360 173 48 120 chr5 141666447 141666499 -10870760 + RCHARR1 DNA MER1_type 859 900 -74 4 1665 1429 244 49 19 chr5 141666499 141666867 -10870392 - MTE2b LTR MaLR 0 379 1 4 1665 360 173 48 120 chr5 141666867 141666939 -10870320 + RCHARR1 DNA MER1_type 901 974 0 4 1665 602 234 101 17 chr5 141667358 141667536 -10869723 + B4A SINE B4 27 219 -73 4 1665 397 341 147 38 chr5 141667562 141667800 -10869459 + B4A SINE B4 25 288 -4 4 1665 405 247 0 0 chr5 141667870 141667943 -10869316 + B4A SINE B4 220 292 0 4 1665 336 295 9 28 chr5 141667945 141668053 -10869206 + ID_B1 SINE B4 67 172 -52 4 1665 401 317 0 0 chr5 141667968 141668072 -10869187 + PB1D10 SINE Alu 7 110 -7 4 1665 239 290 35 71 chr5 141668072 141668100 -10869159 - YREP_Mm Unknown Unknown -1498 285 179 4 1665 519 60 0 0 chr5 141668122 141668189 -10869070 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 4 1665 871 226 65 0 chr5 141668189 141668388 -10868871 - ID_B1 SINE B4 -10 214 3 4 1665 556 250 44 0 chr5 141668644 141668780 -10868479 - B1F SINE Alu -2 147 6 4 1665 503 284 6 86 chr5 141669331 141669493 -10867766 + B1F SINE Alu 1 149 0 4 1665 285 29 0 0 chr5 141669503 141669537 -10867722 + (TG)n Simple_repeat Simple_repeat 2 35 0 4 1665 906 251 9 9 chr5 141669570 141669791 -10867468 - ID_B1 SINE B4 0 224 4 4 1665 813 264 39 58 chr5 141669799 141670109 -10867150 - L1MC1 LINE L1 -15 6318 6015 4 1665 721 247 25 64 chr5 141670110 141670313 -10866946 + B3A SINE B2 3 197 -1 4 1665 516 308 119 29 chr5 141670330 141670574 -10866685 + B4A SINE B4 15 280 -12 5 1665 414 57 0 0 chr5 141670576 141670629 -10866630 + (CA)n Simple_repeat Simple_repeat 1 53 0 5 1665 420 337 17 39 chr5 141670691 141670870 -10866389 + MLT1B LTR MaLR 177 351 -39 5 1665 624 195 98 30 chr5 141670922 141671054 -10866205 - B1_Mur1 SINE Alu 0 149 9 5 1665 399 268 67 80 chr5 141671054 141671072 -10866187 - ID_B1 SINE B4 0 224 77 5 1665 487 273 206 29 chr5 141671093 141671365 -10865894 + ORR1E LTR MaLR 29 348 -11 5 1665 491 264 40 34 chr5 141671379 141671528 -10865731 - RMER15 LTR ERVL 0 575 426 5 1665 327 255 133 0 chr5 141671757 141671855 -10865404 + B4 SINE B4 82 192 -100 5 1665 221 146 21 0 chr5 141671856 141671904 -10865355 + GA-rich Low_complexity Low_complexity 4 52 0 5 1665 598 258 129 62 chr5 141671908 141672164 -10865095 + B4A SINE B4 1 273 -19 5 1665 378 0 0 0 chr5 141672200 141672242 -10865017 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1665 226 284 30 0 chr5 141673200 141673267 -10863992 + GA-rich Low_complexity Low_complexity 2 70 0 5 1665 450 0 0 0 chr5 141673762 141673812 -10863447 + (CA)n Simple_repeat Simple_repeat 2 51 0 5 1665 207 0 0 0 chr5 141673812 141673834 -10863425 + (CG)n Simple_repeat Simple_repeat 2 24 0 5 1665 917 258 10 0 chr5 141674539 141674748 -10862511 + ID_B1 SINE B4 2 212 -12 5 1665 614 263 0 43 chr5 141674777 141674916 -10862343 + B3 SINE B2 14 146 -70 5 1665 483 18 0 0 chr5 141674933 141674989 -10862270 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1665 2485 154 10 5 chr5 141674989 141675407 -10861852 + MTC LTR MaLR 1 420 -1 5 1665 660 48 0 0 chr5 141675727 141675811 -10861448 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 5 1665 209 227 0 0 chr5 141675814 141675858 -10861401 + (TA)n Simple_repeat Simple_repeat 1 44 0 5 1665 423 78 0 38 chr5 141675903 141675983 -10861276 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1665 366 195 0 0 chr5 141676264 141676341 -10860918 + (TG)n Simple_repeat Simple_repeat 2 78 0 5 1665 578 296 105 55 chr5 141676395 141676652 -10860607 - B4A SINE B4 -21 271 2 5 1665 755 241 17 180 chr5 141676814 141677093 -10860166 + B4 SINE B4 1 231 -61 5 1665 823 298 32 47 chr5 141677093 141677304 -10859955 + B4A SINE B4 1 213 -79 5 1665 3295 48 2 5 chr5 141677304 141677701 -10859558 + MTA_Mm LTR MaLR 1 396 0 5 1665 823 298 32 47 chr5 141677701 141677767 -10859492 + B4A SINE B4 214 274 -18 5 1665 414 0 0 0 chr5 141677769 141677815 -10859444 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1665 225 327 0 81 chr5 141677821 141677944 -10859315 - RMER12 LTR ERVK -472 850 738 5 1665 184 329 50 12 chr5 141678035 141678115 -10859144 - L2 LINE L2 -1841 1578 1496 5 1665 311 137 14 0 chr5 141679012 141679085 -10858174 + CT-rich Low_complexity Low_complexity 1 74 0 5 1665 352 317 73 124 chr5 141679085 141679109 -10858150 - B4A SINE B4 -46 246 224 5 1665 336 24 0 0 chr5 141679109 141679150 -10858109 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1665 513 254 121 104 chr5 141679150 141679384 -10857875 - B4 SINE B4 -69 223 1 5 1665 564 304 223 10 chr5 141679799 141680095 -10857164 + ORR1E LTR MaLR 1 359 0 5 1665 397 274 46 46 chr5 141680614 141680809 -10856450 - HAL1-2a_MD LINE L1 -485 2539 2345 5 1665 617 229 58 46 chr5 141680810 141680984 -10856275 - HAL1-2a_MD LINE L1 -503 2521 2346 5 1665 315 314 10 0 chr5 141681012 141681114 -10856145 + (ATG)n Simple_repeat Simple_repeat 1 103 0 5 1665 228 232 100 14 chr5 141681210 141681280 -10855979 - ID2 SINE ID -6 77 2 5 1665 310 256 111 0 chr5 141681290 141681380 -10855879 - PB1D10 SINE Alu -1 116 17 5 1665 308 269 69 56 chr5 141681424 141681561 -10855698 - MIR SINE MIR -117 159 32 5 1665 782 293 58 102 chr5 141681758 141681920 -10855339 + B4 SINE B4 5 179 -113 5 1665 1523 168 32 181 chr5 141681920 141682357 -10854902 + ORR1D1 LTR MaLR 3 374 0 5 1665 782 293 58 102 chr5 141682357 141682487 -10854772 + B4 SINE B4 180 284 -8 5 1665 453 248 19 0 chr5 141682494 141682655 -10854604 + (TA)n Simple_repeat Simple_repeat 2 165 0 5 1665 739 224 8 0 chr5 141682687 141682821 -10854438 + B1_Mur1 SINE Alu 2 136 -13 5 1665 522 289 42 16 chr5 141683036 141683229 -10854030 - MIRb SINE MIR -48 220 23 5 1665 268 280 10 39 chr5 141683661 141683765 -10853494 - CR1_Mam LINE CR1 -1280 924 824 5 1665 1193 225 56 43 chr5 141684213 141684539 -10852720 + MTD LTR MaLR 1 318 -82 5 1665 375 280 33 33 chr5 141684611 141684733 -10852526 + B4 SINE B4 144 265 -27 5 1665 897 128 0 0 chr5 141684751 141684931 -10852328 + (TC)n Simple_repeat Simple_repeat 1 180 0 5 1665 321 89 0 0 chr5 141684931 141684975 -10852284 + (CA)n Simple_repeat Simple_repeat 1 45 0 5 1665 228 361 72 0 chr5 141684983 141685080 -10852179 + ID_B1 SINE B4 73 176 -48 5 1665 411 244 12 0 chr5 141685014 141685100 -10852159 + PB1D10 SINE Alu 29 115 -2 5 1665 859 242 86 0 chr5 141685170 141685368 -10851891 + ID_B1 SINE B4 2 216 -8 5 1665 921 200 60 25 chr5 141685382 141685582 -10851677 + B3 SINE B2 2 208 -8 5 1665 231 291 107 52 chr5 141686090 141686311 -10850948 - L2a LINE L2 -23 3403 3131 5 1665 851 213 94 20 chr5 141686887 141687088 -10850171 - B3 SINE B2 0 216 1 5 1665 795 270 93 5 chr5 141687090 141687178 -10850081 - B4A SINE B4 -62 230 139 5 1665 402 21 0 0 chr5 141687178 141687225 -10850034 + (CA)n Simple_repeat Simple_repeat 1 47 0 5 1665 795 270 93 5 chr5 141687225 141687341 -10849918 - B4A SINE B4 -154 138 8 5 1665 342 215 37 25 chr5 141687968 141688049 -10849210 - ID2 SINE ID -1 82 1 5 1665 1561 42 11 0 chr5 141688049 141688456 -10848803 - ZP3AR Satellite Satellite -11 411 1 5 1665 180 179 0 0 chr5 141688588 141688627 -10848632 + GA-rich Low_complexity Low_complexity 2 40 0 5 1666 1681 209 55 8 chr5 141688892 141689253 -10848006 + MTE2b LTR MaLR 1 378 -1 5 1666 883 226 98 5 chr5 141689723 141689928 -10847331 - URR1B DNA MER1_type 0 225 2 5 1666 246 287 70 53 chr5 141690449 141690563 -10846696 + PB1D10 SINE Alu 1 116 -1 5 1666 874 248 9 32 chr5 141690566 141690783 -10846476 + B3 SINE B2 2 213 -3 5 1666 210 143 0 0 chr5 141690841 141690876 -10846383 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1666 1078 261 38 28 chr5 141690877 141691165 -10846094 - B4 SINE B4 0 292 2 5 1666 343 310 27 53 chr5 141691231 141691381 -10845878 + L2c LINE L2 3241 3386 -1 5 1666 415 263 0 87 chr5 141691643 141691747 -10845512 - ID_B1 SINE B4 -7 217 123 5 1666 576 272 25 31 chr5 141692864 141693027 -10844232 + RMER15 LTR ERVL 277 438 -137 5 1666 419 288 17 52 chr5 141693036 141693208 -10844051 + RMER15 LTR ERVL 396 561 -14 5 1666 787 360 78 12 chr5 141693220 141693628 -10843631 + MER74A LTR ERVL 122 556 -2 5 1666 24 0 0 0 chr5 141693777 141693801 -10843458 + AT_rich Low_complexity Low_complexity 1 24 0 5 1666 5739 209 30 12 chr5 141693803 141694915 -10842344 + ORR1D1-int LTR MaLR 239 1370 0 5 1666 1784 146 43 150 chr5 141694915 141695334 -10841925 + ORR1D1 LTR MaLR 1 374 0 5 1666 317 339 52 29 chr5 141695902 141696075 -10841184 + CR1_Mam LINE CR1 1468 1644 -560 5 1666 646 232 125 36 chr5 141696512 141696704 -10840555 + B4A SINE B4 2 210 -82 5 1666 1267 247 77 21 chr5 141697451 141697840 -10839419 + BGLII_B LTR ERVK 28 438 -3 5 1666 367 263 98 29 chr5 141697925 141698027 -10839232 - PB1D10 SINE Alu 0 117 9 5 1666 240 303 71 35 chr5 141697947 141698060 -10839199 + YREP_Mm Unknown Unknown 223 339 -1473 5 1666 333 363 17 6 chr5 141698201 141698373 -10838886 + (TCCA)n Simple_repeat Simple_repeat 1 174 0 5 1666 672 176 0 0 chr5 141698391 141698522 -10838737 + (TCCA)n Simple_repeat Simple_repeat 1 131 0 5 1666 481 326 119 41 chr5 141698582 141698721 -10838538 - L1ME4a LINE L1 -237 5887 5745 5 1666 1068 133 191 16 chr5 141698721 141698904 -10838355 - B3 SINE B2 -1 215 1 5 1666 481 326 119 41 chr5 141698904 141699033 -10838226 - L1ME4a LINE L1 -380 5744 5598 5 1666 744 12 0 0 chr5 141699039 141699124 -10838135 + (TC)n Simple_repeat Simple_repeat 1 85 0 5 1666 891 147 0 0 chr5 141699149 141699326 -10837933 + (CA)n Simple_repeat Simple_repeat 1 177 0 5 1666 189 0 0 0 chr5 141699702 141699723 -10837536 + (TGGA)n Simple_repeat Simple_repeat 4 24 0 5 1666 1120 263 81 24 chr5 141699829 141700164 -10837095 - MLT1B LTR MaLR -35 355 2 5 1666 481 242 158 0 chr5 141700372 141700492 -10836767 + B1F SINE Alu 8 146 -3 5 1666 361 305 152 0 chr5 141700492 141700610 -10836649 + B4 SINE B4 1 136 -156 5 1666 1921 170 7 98 chr5 141700611 141701049 -10836210 - RMER10B LTR ERVL 0 398 1 5 1666 256 307 78 8 chr5 141701094 141701222 -10836037 - RMER17C-int LTR ERVK -75 3163 3027 5 1666 313 261 21 54 chr5 141701235 141701328 -10835931 - RMER17C-int LTR ERVK -264 2974 2885 5 1666 2521 185 46 36 chr5 141701340 141701839 -10835420 - RMER20A LTR ERVK 0 516 13 5 1666 839 210 48 85 chr5 141701846 141702117 -10835142 - RMER17C-int LTR ERVK -370 2868 2608 5 1666 278 278 36 36 chr5 141702323 141702435 -10834824 - RLTR19-int LTR ERVK -2829 3308 3197 5 1666 423 245 27 48 chr5 141702490 141702636 -10834623 - MYSERV6-int LTR ERVK -271 8688 8546 5 1666 367 319 100 56 chr5 141702729 141703048 -10834211 - ORR1E LTR MaLR -23 336 4 5 1666 375 354 31 49 chr5 141703269 141703489 -10833770 + B4A SINE B4 2 226 -66 5 1666 183 80 0 0 chr5 141703532 141703557 -10833702 + (CA)n Simple_repeat Simple_repeat 1 25 0 5 1666 490 331 39 33 chr5 141703637 141703818 -10833441 + ID_B1 SINE B4 26 207 -17 5 1666 574 312 15 64 chr5 141703843 141704045 -10833214 - B3A SINE B2 -1 197 6 5 1666 326 333 33 46 chr5 141704149 141704300 -10832959 + L3 LINE CR1 4213 4361 -128 5 1666 1638 54 7 0 chr5 141704598 141704914 -10832345 + ZP3AR Satellite Satellite 1 318 0 5 1666 309 235 0 56 chr5 141704914 141704986 -10832273 + ID4_ SINE ID 1 68 -15 5 1666 253 231 15 15 chr5 141705215 141705281 -10831978 + GA-rich Low_complexity Low_complexity 1 66 0 5 1666 485 301 72 103 chr5 141705335 141705627 -10831632 - B4A SINE B4 -8 284 2 6 1666 828 279 88 8 chr5 141706069 141706329 -10830930 + B4A SINE B4 2 282 -10 6 1666 321 294 78 0 chr5 141706615 141706717 -10830542 + L2 LINE L2 2722 2831 -588 6 1666 2503 156 27 2 chr5 141706970 141707381 -10829878 - MTC LTR MaLR 0 421 1 6 1666 6354 167 45 26 chr5 141707383 141708616 -10828643 - MTC-int LTR MaLR -2 1256 1 6 1666 2294 158 9 16 chr5 141708616 141709040 -10828219 - MTC LTR MaLR 0 421 1 6 1666 564 350 45 10 chr5 141709092 141709294 -10827965 - B4A SINE B4 -7 285 77 6 1666 512 229 56 14 chr5 141709324 141709466 -10827793 - B1F SINE Alu 0 149 2 6 1666 754 192 0 8 chr5 141709656 141709787 -10827472 + B1_Mur2 SINE Alu 10 139 -10 6 1666 458 96 14 0 chr5 141709788 141709861 -10827398 + (CAAT)n Simple_repeat Simple_repeat 4 77 0 6 1666 251 260 0 0 chr5 141709908 141709958 -10827301 - MER5A DNA MER1_type -9 180 131 6 1666 648 275 33 13 chr5 141710075 141710251 -10827008 + ID_B1 SINE B4 85 258 -34 6 1666 207 0 0 0 chr5 141710902 141710925 -10826334 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 1666 189 0 0 0 chr5 141710974 141710995 -10826264 + (T)n Simple_repeat Simple_repeat 1 21 0 6 1666 470 312 121 62 chr5 141711099 141711406 -10825853 - Lx8 LINE L1 0 7473 7149 6 1666 1534 37 37 11 chr5 141711407 141711597 -10825662 - B2_Mm2 SINE B2 0 195 1 6 1666 207 0 0 0 chr5 141711633 141711656 -10825603 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1666 1042 47 8 0 chr5 141711680 141711808 -10825451 - B1_Mm SINE Alu -18 129 1 6 1666 843 265 23 6 chr5 141711809 141712033 -10825226 - Lx8 LINE L1 -494 7150 6931 6 1666 324 0 0 0 chr5 141712198 141712234 -10825025 + (TGGGGG)n Simple_repeat Simple_repeat 4 39 0 6 1666 529 317 151 0 chr5 141712254 141712453 -10824806 + B4A SINE B4 50 278 -14 6 1666 387 0 0 0 chr5 141712456 141712499 -10824760 + (CA)n Simple_repeat Simple_repeat 2 44 0 6 1666 895 141 42 0 chr5 141712721 141712863 -10824396 - B1_Mus1 SINE Alu 0 148 1 6 1666 581 192 161 40 chr5 141712961 141713135 -10824124 - B3A SINE B2 -3 195 1 6 1666 337 239 14 0 chr5 141713444 141713515 -10823744 + ID4_ SINE ID 3 74 -9 6 1666 252 77 0 0 chr5 141713521 141713560 -10823699 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 6 1666 261 0 0 0 chr5 141713866 141713895 -10823364 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 6 1666 1128 89 0 0 chr5 141714038 141714196 -10823063 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 6 1666 280 270 39 20 chr5 141714286 141714388 -10822871 - PB1D10 SINE Alu -13 104 1 6 1666 405 0 0 0 chr5 141714475 141714520 -10822739 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1666 615 296 12 6 chr5 141714705 141714878 -10822381 - B4A SINE B4 -118 174 1 6 1666 342 242 16 0 chr5 141714880 141714942 -10822317 - B1F1 SINE Alu -86 63 1 6 1666 248 333 14 0 chr5 141714882 141714951 -10822308 - B4 SINE B4 -146 146 77 6 1666 191 263 222 26 chr5 141715063 141715180 -10822079 + MIR SINE MIR 21 160 -102 6 1666 183 273 170 54 chr5 141715548 141715695 -10821564 - MIRb SINE MIR -37 231 68 6 1666 218 246 22 76 chr5 141717330 141717515 -10819744 + (CGGG)n Simple_repeat Simple_repeat 4 178 0 6 1666 192 135 0 0 chr5 141717534 141717571 -10819688 + (CGG)n Simple_repeat Simple_repeat 2 38 0 6 1666 37 102 0 0 chr5 141717752 141717880 -10819379 + GC_rich Low_complexity Low_complexity 1 128 0 6 1666 31 0 0 0 chr5 141717941 141717972 -10819287 + GC_rich Low_complexity Low_complexity 1 31 0 6 1666 216 182 0 0 chr5 141719492 141719536 -10817723 + T-rich Low_complexity Low_complexity 1 44 0 6 1666 303 333 50 0 chr5 141721751 141721850 -10815409 + B4A SINE B4 125 228 -64 6 1666 314 296 209 20 chr5 141722049 141722197 -10815062 - MER5B DNA MER1_type -2 176 1 6 1666 504 261 21 48 chr5 141722407 141722552 -10814707 - ID_B1 SINE B4 -3 221 81 6 1666 461 186 8 0 chr5 141722649 141722744 -10814515 + B3 SINE B2 52 151 -47 6 1666 686 232 46 0 chr5 141723313 141723464 -10813795 - RSINE1 SINE B4 -4 161 4 6 1666 25 0 0 0 chr5 141724535 141724560 -10812699 + AT_rich Low_complexity Low_complexity 1 25 0 6 1666 252 275 112 40 chr5 141725173 141725298 -10811961 + MIRc SINE MIR 11 144 -124 6 1666 180 0 0 0 chr5 141725299 141725319 -10811940 + (TGG)n Simple_repeat Simple_repeat 2 21 0 6 1666 504 0 0 0 chr5 141725501 141725557 -10811702 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1666 450 94 0 0 chr5 141726126 141726190 -10811069 + (TG)n Simple_repeat Simple_repeat 1 64 0 6 1666 895 212 0 0 chr5 141726197 141726357 -10810902 - B3A SINE B2 -38 160 1 6 1666 290 256 38 13 chr5 141728052 141728131 -10809128 - PB1D10 SINE Alu -12 105 25 6 1666 199 326 116 20 chr5 141728445 141728592 -10808667 - L2 LINE L2 -935 2484 2324 6 1666 522 0 0 0 chr5 141728640 141728698 -10808561 + (TC)n Simple_repeat Simple_repeat 1 58 0 6 1666 225 0 0 0 chr5 141728699 141728724 -10808535 + (TG)n Simple_repeat Simple_repeat 2 26 0 6 1666 299 152 0 0 chr5 141728724 141728770 -10808489 - MTC LTR MaLR -5 414 369 6 1666 629 121 20 0 chr5 141728769 141728868 -10808391 - MTC LTR MaLR -231 190 90 6 1666 542 268 222 42 chr5 141728923 141729162 -10808097 - B4A SINE B4 -2 290 9 6 1666 260 333 11 47 chr5 141729162 141729334 -10807925 + MIR SINE MIR 104 268 0 6 1666 470 281 31 51 chr5 141730317 141730572 -10806687 + L1MEd LINE L1 896 1145 -4974 6 1666 465 267 89 51 chr5 141730646 141730804 -10806455 - RSINE1 SINE B4 0 165 2 6 1666 322 317 85 8 chr5 141730966 141731146 -10806113 + L1MEd LINE L1 1452 1657 -4568 6 1666 435 306 111 21 chr5 141731291 141731525 -10805734 + MER2 DNA MER2_type 76 330 -15 6 1666 386 212 31 1 chr5 141731582 141731693 -10805566 + L1MA8 LINE L1 5991 6103 -188 6 1666 506 221 56 14 chr5 141731990 141732132 -10805127 - B1F1 SINE Alu 0 149 2 6 1666 254 82 41 0 chr5 141732247 141732296 -10804963 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 6 1666 459 282 29 0 chr5 141732630 141732733 -10804526 - PB1D10 SINE Alu -6 111 6 6 1666 583 312 112 9 chr5 141732849 141733082 -10804177 - B4A SINE B4 -10 282 26 6 1666 312 27 0 0 chr5 141733544 141733581 -10803678 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 6 1666 209 261 0 0 chr5 141733625 141733671 -10803588 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1666 364 226 29 161 chr5 141733700 141733837 -10803422 - B4 SINE B4 -4 288 170 6 1666 232 246 148 0 chr5 141733836 141733897 -10803362 - B4 SINE B4 -24 268 199 6 1666 441 234 128 0 chr5 141735200 141735341 -10801918 - RSINE1 SINE B4 -4 161 3 6 1666 465 275 81 43 chr5 141735890 141736076 -10801183 + B3A SINE B2 5 197 -1 6 1666 340 273 0 0 chr5 141736126 141736192 -10801067 - tRNA-Ala-GCG tRNA tRNA -9 66 1 6 1666 508 233 99 40 chr5 141736296 141736448 -10800811 - RSINE1 SINE B4 0 165 5 6 1666 757 268 79 55 chr5 141736826 141737030 -10800229 + B4 SINE B4 21 221 -71 6 1666 291 54 0 0 chr5 141737030 141737067 -10800192 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 6 1666 757 304 61 35 chr5 141737067 141737142 -10800117 + B4 SINE B4 222 278 -14 6 1666 545 236 73 18 chr5 141737186 141737367 -10799892 + MIRb SINE MIR 58 262 0 6 1666 2656 148 22 22 chr5 141738030 141738494 -10798765 - RMER4A LTR ERVK 0 466 3 6 1666 383 236 3 31 chr5 141739204 141739326 -10797933 - B1_Mur1 SINE Alu -6 143 1 6 1666 717 268 134 12 chr5 141740611 141740864 -10796395 + B4A SINE B4 1 284 -8 6 1666 348 24 0 0 chr5 141740868 141740909 -10796350 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1666 1402 268 87 132 chr5 141740909 141741441 -10795818 - L1MB5 LINE L1 -10 6164 5619 6 1666 1076 202 20 5 chr5 141741441 141741645 -10795614 + B3 SINE B2 1 207 -9 6 1666 1402 268 87 132 chr5 141741645 141741745 -10795514 - L1MB5 LINE L1 -556 5618 5601 6 1666 412 274 129 68 chr5 141741745 141742008 -10795251 - B4 SINE B4 -11 281 3 6 1666 1402 245 185 47 chr5 141742008 141742382 -10794877 - L1MB5 LINE L1 -574 5600 5189 6 1666 233 28 83 0 chr5 141742966 141743002 -10794257 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 6 1666 574 322 34 29 chr5 141745226 141745431 -10791828 - MLT1E2 LTR MaLR -179 448 243 6 1666 905 240 71 112 chr5 141745672 141746066 -10791193 - MTEa LTR MaLR -1 378 1 6 1666 216 0 0 0 chr5 141746269 141746293 -10790966 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1666 669 276 40 0 chr5 141747396 141747570 -10789689 - B3A SINE B2 -16 182 2 6 1666 920 216 240 4 chr5 141748437 141748670 -10788589 + B4A SINE B4 2 289 -3 6 1666 402 57 0 0 chr5 141748675 141748728 -10788531 + (CA)n Simple_repeat Simple_repeat 1 53 0 6 1666 450 79 0 0 chr5 141749636 141749699 -10787560 + (TA)n Simple_repeat Simple_repeat 1 63 0 6 1666 979 223 112 117 chr5 141749702 141750078 -10787181 - MTE2a LTR MaLR -5 374 1 6 1666 327 179 0 0 chr5 141750158 141750225 -10787034 + CT-rich Low_complexity Low_complexity 1 67 0 6 1666 250 281 222 10 chr5 141750501 141750699 -10786560 + L3 LINE CR1 3897 4136 -353 6 1666 212 152 43 0 chr5 141750976 141751022 -10786237 + T-rich Low_complexity Low_complexity 3 50 0 6 1666 722 208 158 5 chr5 141751154 141751357 -10785902 + MER46C DNA MER2_type 81 314 -24 6 1666 231 188 155 23 chr5 141751431 141751522 -10785737 + MIRc SINE MIR 134 224 -38 6 1666 417 255 9 43 chr5 141751595 141751710 -10785549 + PB1D7 SINE Alu 3 113 -7 6 1666 483 18 0 0 chr5 141752886 141752942 -10784317 + (TG)n Simple_repeat Simple_repeat 2 57 0 6 1666 532 303 0 0 chr5 141752947 141753069 -10784190 - RSINE1 SINE B4 -22 143 22 6 1666 612 262 148 43 chr5 141753128 141753546 -10783713 - L1MB7 LINE L1 0 6184 5723 6 1666 883 300 83 11 chr5 141753592 141753858 -10783401 - B4 SINE B4 -3 289 5 6 1666 418 272 110 56 chr5 141753913 141754247 -10783012 - L1M3 LINE L1 -2329 5666 5318 7 1666 836 265 60 35 chr5 141754314 141754599 -10782660 - B4A SINE B4 0 292 1 7 1666 1205 61 0 0 chr5 141755081 141755228 -10782031 + B1_Mus2 SINE Alu 1 147 0 7 1666 456 330 67 35 chr5 141755340 141755623 -10781636 - B4A SINE B4 0 292 1 7 1666 792 59 0 0 chr5 141758610 141758712 -10778547 + (TCCC)n Simple_repeat Simple_repeat 4 105 0 7 1666 6382 212 91 37 chr5 141758715 141758843 -10778416 - Lx6 LINE L1 -10 7450 7298 7 1666 240 35 0 0 chr5 141758843 141758872 -10778387 + (ATATG)n Simple_repeat Simple_repeat 5 33 0 7 1666 6382 197 72 45 chr5 141758872 141760826 -10776433 - Lx6 LINE L1 -163 7297 5300 7 1666 4825 60 11 0 chr5 141760826 141761443 -10775816 - L1_Mus1 LINE L1 -1 6566 5943 7 1666 4442 162 30 64 chr5 141761443 141761505 -10775754 - Lx6 LINE L1 -581 5299 5246 7 1666 664 33 11 11 chr5 141761505 141761597 -10775662 + (TCTA)n Simple_repeat Simple_repeat 1 92 0 7 1666 4442 162 30 64 chr5 141761597 141761944 -10775315 - Lx6 LINE L1 -635 5245 4896 7 1666 8262 124 52 16 chr5 141761942 141762768 -10774491 - Lx6 LINE L1 -2990 2890 2068 7 1666 201 94 0 0 chr5 141762768 141762800 -10774459 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1666 8262 124 52 16 chr5 141762800 141763577 -10773682 - Lx6 LINE L1 -3813 2067 1229 7 1666 2897 208 69 8 chr5 141763596 141764236 -10773023 - Lx5 LINE L1 -11 7039 6361 7 1666 1877 130 18 3 chr5 141764228 141764567 -10772692 - Lx6 LINE L1 -6496 1232 889 7 1666 254 29 0 28 chr5 141764567 141764603 -10772656 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1666 938 151 0 0 chr5 141764603 141764742 -10772517 - B1_Mus1 SINE Alu -9 139 1 7 1666 606 175 0 0 chr5 141764757 141764854 -10772405 - B1_Mus2 SINE Alu -46 101 5 7 1666 2121 171 43 16 chr5 141764867 141765306 -10771953 - Lx6 LINE L1 -6828 900 450 7 1666 309 130 0 0 chr5 141765292 141765338 -10771921 - Lx6 LINE L1 -7628 100 55 7 1666 258 280 147 20 chr5 141766403 141766598 -10770661 + L1MD2 LINE L1 1073 1294 -5246 7 1666 1172 68 0 0 chr5 141766598 141766744 -10770515 + B1_Mus2 SINE Alu 2 147 0 7 1666 244 198 111 0 chr5 141766924 141767005 -10770254 + L1MD2 LINE L1 1534 1623 -5010 7 1666 1344 222 77 28 chr5 141767050 141767403 -10769856 + ORR1D2 LTR MaLR 1 370 0 7 1666 433 290 154 5 chr5 141767467 141767876 -10769383 + L1MD2 LINE L1 1827 2296 -4337 7 1666 591 256 178 12 chr5 141768074 141768315 -10768944 + Tigger5 DNA MER2_type 2126 2406 0 7 1666 635 292 169 45 chr5 141768327 141769854 -10767405 + L1MD2 LINE L1 2541 4257 -2280 7 1666 432 319 43 57 chr5 141769875 141770227 -10767032 + L1MD2 LINE L1 4306 4652 -1885 7 1666 415 222 517 0 chr5 141770245 141770363 -10766896 - B3 SINE B2 -37 179 1 7 1666 348 288 87 48 chr5 141770436 141770644 -10766615 + L1MD2 LINE L1 4760 4975 -1562 7 1666 723 253 67 6 chr5 141770650 141770671 -10766588 - B3A SINE B2 -8 190 169 7 1666 318 26 0 0 chr5 141770671 141770710 -10766549 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1666 723 253 67 6 chr5 141770710 141770867 -10766392 - B3A SINE B2 -30 168 1 7 1666 674 263 149 48 chr5 141770886 141771569 -10765690 + L1MD2 LINE L1 5466 6217 -533 7 1666 461 338 79 35 chr5 141771580 141771923 -10765336 + L1MD2 LINE L1 6261 6618 -15 7 1666 824 231 65 5 chr5 141771945 141772145 -10765114 + ID_B1 SINE B4 1 212 -12 7 1666 318 80 0 0 chr5 141772147 141772197 -10765062 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 7 1666 393 228 16 24 chr5 141772708 141772834 -10764425 - L1MB2 LINE L1 -14 6157 6033 7 1666 188 0 74 0 chr5 141773637 141773664 -10763595 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 7 1666 693 92 0 0 chr5 141774863 141774961 -10762298 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 7 1666 1134 144 45 50 chr5 141775889 141776109 -10761150 - URR1B DNA MER1_type -5 220 2 7 1666 199 222 89 0 chr5 141776172 141776217 -10761042 + L2c LINE L2 3110 3158 -229 7 1666 490 310 59 55 chr5 141777278 141777299 -10759960 - B4 SINE B4 0 292 272 7 1666 444 111 0 0 chr5 141777299 141777371 -10759888 + (TG)n Simple_repeat Simple_repeat 1 72 0 7 1666 490 310 59 55 chr5 141777371 141777639 -10759620 - B4 SINE B4 -21 271 3 7 1666 355 305 53 60 chr5 141777660 141777810 -10759449 + MIRb SINE MIR 46 194 -74 7 1666 255 320 66 0 chr5 141779091 141779213 -10758046 + MamRep605 Unknown Unknown 494 623 -253 7 1666 1236 206 0 9 chr5 141779602 141779818 -10757441 - B3 SINE B2 0 216 3 7 1666 1194 256 76 22 chr5 141779869 141780225 -10757034 - MTEa LTR MaLR -4 375 1 7 1666 873 290 89 14 chr5 141780666 141781216 -10756043 + L1MEe LINE L1 2080 2661 -3485 7 1666 213 39 0 0 chr5 141781235 141781261 -10755998 + (TC)n Simple_repeat Simple_repeat 2 27 0 7 1666 453 19 0 0 chr5 141781261 141781315 -10755944 + (CA)n Simple_repeat Simple_repeat 1 54 0 7 1666 378 0 0 0 chr5 141781996 141782038 -10755221 + (TTA)n Simple_repeat Simple_repeat 2 43 0 7 1666 214 217 183 0 chr5 141782796 141782856 -10754403 - ID4_ SINE ID -10 73 3 7 1666 250 200 0 45 chr5 141784131 141784220 -10753039 + (TATG)n Simple_repeat Simple_repeat 4 88 0 7 1666 232 229 0 125 chr5 141784222 141784302 -10752957 - ID2 SINE ID -10 73 4 7 1666 372 222 133 0 chr5 141785008 141785143 -10752116 - L1ME3B LINE L1 -18 6222 6022 7 1666 208 100 0 48 chr5 141786533 141786575 -10750684 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 7 1666 190 385 133 9 chr5 141787690 141787795 -10749464 + L2b LINE L2 3254 3371 -4 7 1666 2980 298 101 25 chr5 141788572 141789611 -10747648 - Lx8 LINE L1 -9 7464 6368 7 1666 1453 156 0 4 chr5 141789611 141789837 -10747422 + URR1B DNA MER1_type 1 225 0 7 1666 2980 298 101 25 chr5 141789837 141789969 -10747290 - Lx8 LINE L1 -1106 6367 6213 7 1666 204 40 0 0 chr5 141789969 141789994 -10747265 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 7 1666 2980 298 101 25 chr5 141789994 141790065 -10747194 - Lx8 LINE L1 -1261 6212 6128 7 1666 243 265 5 24 chr5 141791635 141791738 -10745521 - L1MD1 LINE L1 -17 6342 6290 7 1666 296 263 69 103 chr5 141791752 141791926 -10745333 - L1MD1 LINE L1 -259 5983 5816 7 1666 855 184 11 39 chr5 141791950 141792131 -10745128 - URR1A DNA MER1_type 0 226 51 7 1666 376 299 21 0 chr5 141792351 141792448 -10744811 - MER44D DNA MER2_type -606 99 1 7 1666 366 253 109 36 chr5 141792502 141792695 -10744564 - L1MD1 LINE L1 -743 5403 5197 7 1666 1358 97 133 0 chr5 141792887 141793083 -10744176 - URR1A DNA MER1_type 0 226 5 7 1666 390 317 10 0 chr5 141793562 141793666 -10743593 + PB1D10 SINE Alu 2 106 -11 7 1666 261 211 0 0 chr5 141793680 141793737 -10743522 + (CAA)n Simple_repeat Simple_repeat 3 59 0 7 1666 1599 246 173 20 chr5 141793853 141794655 -10742604 - L1MD1 LINE L1 -938 5208 4284 7 1666 459 0 0 0 chr5 141795114 141795165 -10742094 + (TG)n Simple_repeat Simple_repeat 2 52 0 7 1666 697 277 6 30 chr5 141795169 141795333 -10741926 - B3A SINE B2 -38 160 1 7 1666 302 241 58 0 chr5 141795564 141795651 -10741608 - L1MC4a LINE L1 -1985 5897 5806 7 1666 362 301 122 40 chr5 141795651 141795979 -10741280 - L1MC4a LINE L1 -2250 5632 5278 7 1666 267 173 0 0 chr5 141796029 141796081 -10741178 + CT-rich Low_complexity Low_complexity 1 52 0 7 1666 473 328 12 25 chr5 141796478 141796683 -10740576 - MER58A DNA MER1_type -2 222 21 7 1666 5801 48 0 4 chr5 141797404 141798080 -10739179 - L1Md_F2 LINE L1 0 6582 5910 7 1666 4256 43 4 0 chr5 141798080 141798588 -10738671 + L1Md_F2 LINE L1 5374 5883 0 7 1666 288 0 0 0 chr5 141798979 141799011 -10738248 + (TG)n Simple_repeat Simple_repeat 2 33 0 7 1666 864 282 69 33 chr5 141799038 141799313 -10737946 - B4A SINE B4 -6 286 2 7 1666 209 236 67 0 chr5 141799390 141799450 -10737809 + MIR SINE MIR 194 253 -9 7 1666 404 267 76 8 chr5 141799611 141799743 -10737516 + MER58A DNA MER1_type 54 194 -30 7 1666 788 232 196 0 chr5 141800044 141800238 -10737021 + B4A SINE B4 34 265 -27 7 1666 243 0 0 0 chr5 141800238 141800265 -10736994 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 7 1666 393 22 0 0 chr5 141800278 141800324 -10736935 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1666 477 0 0 0 chr5 141800324 141800376 -10736883 + (GA)n Simple_repeat Simple_repeat 2 54 0 7 1666 552 271 106 11 chr5 141800402 141800581 -10736678 + B3A SINE B2 1 196 -2 7 1666 22 35 0 0 chr5 141800587 141800616 -10736643 + AT_rich Low_complexity Low_complexity 1 29 0 7 1666 1872 166 91 43 chr5 141802191 141802402 -10734857 + ORR1B1 LTR MaLR 1 204 -190 7 1666 3980 186 36 5 chr5 141802402 141803067 -10734192 + Lx5 LINE L1 6361 7046 -4 7 1666 1872 158 90 48 chr5 141803067 141803254 -10734005 + ORR1B1 LTR MaLR 205 394 0 7 1666 449 202 131 8 chr5 141803696 141803826 -10733433 + L1M6 LINE L1 1489 1634 -4862 7 1666 42180 6 0 1 chr5 141803857 141810647 -10726612 - L1Md_A LINE L1 0 6582 1 7 1666 459 0 0 0 chr5 141810851 141810902 -10726357 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1666 815 220 138 23 chr5 141810920 141811181 -10726078 - B4 SINE B4 0 292 2 7 1666 204 40 0 0 chr5 141812319 141812344 -10724915 + (CA)n Simple_repeat Simple_repeat 2 26 0 7 1666 327 49 0 0 chr5 141812344 141812384 -10724875 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1666 411 279 127 74 chr5 141812870 141812965 -10724294 + L1M4 LINE L1 4869 4955 -1191 7 1666 414 0 0 0 chr5 141812965 141813011 -10724248 + (TTA)n Simple_repeat Simple_repeat 3 48 0 7 1666 3255 57 23 0 chr5 141813012 141813399 -10723860 - L1_Mus1 LINE L1 -12 6555 6160 7 1666 411 279 127 74 chr5 141813399 141813584 -10723675 + L1M4 LINE L1 4956 5166 -980 7 1666 310 301 81 68 chr5 141814037 141814272 -10722987 + L1M6 LINE L1 3997 4234 -2166 7 1666 1595 287 75 27 chr5 141814668 141815191 -10722068 + Lx8 LINE L1 6924 7471 -2 7 1666 4774 91 47 22 chr5 141815452 141816135 -10721124 - Lx3B LINE L1 -2 6971 6272 7 1666 221 143 0 45 chr5 141816174 141816218 -10721041 + L2b LINE L2 3085 3126 -249 7 1666 1081 37 7 0 chr5 141816332 141816467 -10720792 + B1_Mus1 SINE Alu 13 148 0 7 1666 183 186 0 0 chr5 141816468 141816511 -10720748 + A-rich Low_complexity Low_complexity 1 43 0 7 1666 434 260 49 55 chr5 141816528 141816691 -10720568 - RSINE1 SINE B4 0 165 4 7 1666 474 18 0 0 chr5 141816728 141816783 -10720476 + (TG)n Simple_repeat Simple_repeat 2 56 0 7 1666 712 258 55 50 chr5 141816785 141817005 -10720254 - B4 SINE B4 -23 269 49 7 1666 180 0 0 0 chr5 141817402 141817422 -10719837 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1666 1129 333 65 28 chr5 141817500 141817983 -10719276 + MLT1F LTR MaLR 1 521 -39 7 1666 324 0 0 0 chr5 141818121 141818157 -10719102 + (TAA)n Simple_repeat Simple_repeat 2 37 0 7 1666 54 49 0 0 chr5 141818161 141818243 -10719016 + AT_rich Low_complexity Low_complexity 1 82 0 7 1666 235 0 0 0 chr5 141818275 141818302 -10718957 + B1_Mm SINE Alu 109 135 -12 7 1666 441 36 0 0 chr5 141818302 141818357 -10718902 + (GAAA)n Simple_repeat Simple_repeat 3 57 0 7 1666 4247 263 69 15 chr5 141818358 141819502 -10717757 - Lx8 LINE L1 -84 7389 6184 7 208 902 328 26 0 chr5 141819775 141820043 -10717216 - B4A SINE B4 -13 279 5 7 1667 22 35 0 0 chr5 141820043 141820072 -10717187 + AT_rich Low_complexity Low_complexity 1 29 0 7 1667 363 321 38 72 chr5 141820178 141820413 -10716846 - HAL1 LINE L1 -1471 1036 810 7 1667 189 335 152 20 chr5 141821783 141822066 -10715193 - L2a LINE L2 -4 3422 3049 7 1667 222 219 0 0 chr5 141822266 141822307 -10714952 + ID SINE ID 1 41 -183 7 1667 1252 158 13 71 chr5 141822309 141822548 -10714711 - URR1B DNA MER1_type 0 225 1 8 1667 21 0 0 0 chr5 141823435 141823456 -10713803 + AT_rich Low_complexity Low_complexity 1 21 0 8 1667 210 150 0 0 chr5 141824915 141824955 -10712304 + (TG)n Simple_repeat Simple_repeat 1 40 0 8 1667 473 308 190 8 chr5 141824978 141825220 -10712039 - B4 SINE B4 -4 288 3 8 1667 1139 242 129 21 chr5 141825811 141826240 -10711019 - MTC-int LTR MaLR -462 796 245 8 1667 317 188 11 101 chr5 141826220 141826309 -10710950 + MTD-int LTR MaLR 387 467 -791 8 1667 1320 237 93 117 chr5 141826303 141826809 -10710450 + MTD-int LTR MaLR 765 1258 0 8 1667 1880 209 39 15 chr5 141826809 141827218 -10710041 + MTD LTR MaLR 1 419 0 8 1667 195 373 0 0 chr5 141827341 141827400 -10709859 + L2b LINE L2 3022 3080 -295 8 1667 37 62 0 0 chr5 141827641 141827706 -10709553 + AT_rich Low_complexity Low_complexity 1 65 0 8 1667 3887 72 12 2 chr5 141827706 141828191 -10709068 - L1_Mus3 LINE L1 -4 6634 6145 8 1667 671 210 131 36 chr5 141829748 141829916 -10707343 - B3A SINE B2 -14 184 1 8 1667 383 314 64 62 chr5 141830001 141830436 -10706823 + MLT1C LTR MaLR 1 497 -8 8 1667 654 299 96 32 chr5 141830442 141830819 -10706440 + MLT1C-int LTR MaLR 6 406 -1083 8 1667 607 191 52 0 chr5 141831033 141831148 -10706111 + B1_Mur1 SINE Alu 29 149 0 8 1667 419 302 81 103 chr5 141831277 141831598 -10705661 + MLT1C LTR MaLR 61 374 -16 8 1667 204 40 0 0 chr5 141832171 141832196 -10705063 + (TATATG)n Simple_repeat Simple_repeat 6 30 0 8 1667 6704 110 62 21 chr5 141832252 141833234 -10704025 - Lx2B LINE L1 -5 6995 5974 8 1667 587 295 18 12 chr5 141833237 141833405 -10703854 - B4A SINE B4 -123 169 1 8 1667 358 312 8 16 chr5 141834377 141834504 -10702755 - MLT1H1 LTR MaLR -6 549 424 8 1667 246 341 44 15 chr5 141835008 141835145 -10702114 - L1MB4 LINE L1 -173 6007 5867 8 1667 367 250 36 18 chr5 141835192 141835302 -10701957 - PB1D10 SINE Alu 0 117 6 8 1667 302 319 83 33 chr5 141835360 141835600 -10701659 - L1MB4 LINE L1 -482 5707 5456 8 1667 568 338 85 63 chr5 141836111 141836794 -10700465 - L1MB7 LINE L1 -3 6674 5977 8 1667 229 281 146 16 chr5 141836940 141837063 -10700196 - L1MB7 LINE L1 -921 5723 5585 8 1667 742 308 130 16 chr5 141837107 141837714 -10699545 - L1MB7 LINE L1 -1151 5493 4818 8 1667 238 269 75 0 chr5 141837777 141837844 -10699415 - RSINE1 SINE B4 -43 122 51 8 1667 1617 306 109 27 chr5 141837944 141839211 -10698048 - L1MB7 LINE L1 -5076 1466 96 8 1667 256 65 65 0 chr5 141839364 141839410 -10697849 + (CAATA)n Simple_repeat Simple_repeat 2 50 0 8 1667 289 228 0 34 chr5 141839650 141839709 -10697550 - Tigger7 DNA MER2_type -2 2489 2433 8 1667 455 73 15 0 chr5 141840615 141840683 -10696576 + (GA)n Simple_repeat Simple_repeat 2 70 0 8 1667 215 222 0 19 chr5 141842213 141842280 -10694979 + MIR SINE MIR 99 162 -46 8 1667 774 301 30 11 chr5 141842334 141842599 -10694660 + B4 SINE B4 5 274 -18 8 1667 204 314 0 56 chr5 141843134 141843296 -10693963 + (CATATA)n Simple_repeat Simple_repeat 6 158 0 8 1667 539 221 121 156 chr5 141843643 141843932 -10693327 - B4A SINE B4 -13 279 1 8 1667 467 250 0 35 chr5 141847255 141847400 -10689859 - ID_B1 SINE B4 -3 221 82 8 1667 22 35 0 0 chr5 141848292 141848321 -10688938 + AT_rich Low_complexity Low_complexity 1 29 0 8 1667 701 278 80 0 chr5 141848349 141848536 -10688723 - B3 SINE B2 -13 203 2 8 1667 31 58 0 0 chr5 141848798 141848850 -10688409 + AT_rich Low_complexity Low_complexity 1 52 0 8 1667 835 280 76 4 chr5 141849847 141850084 -10687175 - B4A SINE B4 -4 288 35 8 1667 348 211 164 9 chr5 141850262 141850372 -10686887 + MIR SINE MIR 113 239 -23 8 1667 285 29 0 0 chr5 141850432 141850466 -10686793 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1667 23 68 0 0 chr5 141850554 141850598 -10686661 + AT_rich Low_complexity Low_complexity 1 44 0 8 1667 635 262 317 24 chr5 141853016 141853309 -10683950 - MTEb LTR MaLR 0 379 1 8 1667 249 200 0 0 chr5 141854823 141854873 -10682386 - L1MB7 LINE L1 -25 6159 6110 8 1667 269 276 51 17 chr5 141854969 141855087 -10682172 - L1MB1 LINE L1 -226 5942 5821 8 1667 206 105 0 26 chr5 141856606 141856645 -10680614 + (AGGGGG)n Simple_repeat Simple_repeat 1 38 0 8 1667 200 351 0 0 chr5 141856990 141857064 -10680195 + L2b LINE L2 3301 3374 -1 8 1667 3039 77 12 5 chr5 141859292 141859698 -10677561 - L1_Mus1 LINE L1 -2 6565 6157 8 1667 357 24 0 0 chr5 141860020 141860062 -10677197 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1667 342 0 0 0 chr5 141861034 141861072 -10676187 + (TAA)n Simple_repeat Simple_repeat 2 39 0 8 1667 528 162 0 0 chr5 141861548 141861653 -10675606 + (CA)n Simple_repeat Simple_repeat 2 106 0 8 1667 524 317 7 14 chr5 141861653 141861800 -10675459 - RSINE1 SINE B4 -16 149 4 8 1667 868 148 138 28 chr5 141862545 141862726 -10674533 + B3 SINE B2 2 202 -14 8 1667 216 0 0 0 chr5 141862726 141862750 -10674509 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 8 1667 23 68 0 0 chr5 141862806 141862850 -10674409 + AT_rich Low_complexity Low_complexity 1 44 0 8 1667 396 310 70 0 chr5 141863075 141863175 -10674084 - PB1D10 SINE Alu -5 112 6 8 1667 570 261 25 0 chr5 141864277 141864434 -10672825 + MER2 DNA MER2_type 88 248 -97 8 1667 201 272 34 120 chr5 141864867 141864984 -10672275 + MIRb SINE MIR 153 259 -9 8 1667 328 264 43 11 chr5 141865057 141865149 -10672110 - B1F1 SINE Alu -53 96 2 8 1667 244 352 0 28 chr5 141865149 141865165 -10672094 - ID_B1 SINE B4 -50 174 70 8 1667 598 169 6 67 chr5 141865530 141865558 -10671701 + ID_B1 SINE B4 69 222 -1 8 1667 1046 22 0 0 chr5 141865558 141865694 -10671565 + B1_Mus2 SINE Alu 12 147 0 8 1667 219 103 0 0 chr5 141865696 141865735 -10671524 + (A)n Simple_repeat Simple_repeat 1 39 0 8 1667 271 331 30 30 chr5 141865884 141866015 -10671244 - Tigger6a DNA MER2_type -265 818 688 8 1667 590 337 88 0 chr5 141866085 141866391 -10670868 - Tigger6a DNA MER2_type -521 562 230 8 1667 428 33 50 0 chr5 141866404 141866464 -10670795 + (TTTTG)n Simple_repeat Simple_repeat 3 65 0 8 1667 528 228 8 45 chr5 141866467 141866600 -10670659 - ID_B1 SINE B4 -3 221 94 8 1667 387 295 40 0 chr5 141866625 141866774 -10670485 - Tigger6a DNA MER2_type -900 183 29 8 1667 210 325 13 0 chr5 141866815 141866892 -10670367 - MIRc SINE MIR -121 147 70 8 1667 22 35 0 0 chr5 141867509 141867538 -10669721 + AT_rich Low_complexity Low_complexity 1 29 0 8 1667 223 312 123 12 chr5 141867544 141867706 -10669553 - MIRb SINE MIR -17 251 72 8 1667 748 225 86 21 chr5 141867967 141868153 -10669106 + B3 SINE B2 1 198 -18 8 1667 2389 155 50 10 chr5 141868155 141868558 -10668701 + MTC LTR MaLR 1 419 -2 8 1667 1516 22 21 16 chr5 141868583 141868770 -10668489 + B2_Mm2 SINE B2 1 188 -7 8 1667 243 321 71 7 chr5 141869882 141870023 -10667236 + MIRb SINE MIR 1 150 -118 8 1667 390 332 99 25 chr5 141870211 141870412 -10666847 + B4 SINE B4 65 280 -12 8 1667 273 57 0 0 chr5 141870900 141870935 -10666324 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 8 1667 1539 40 5 0 chr5 141871570 141871867 -10665392 + ZP3AR Satellite Satellite 1 298 -1 8 1667 365 169 46 0 chr5 141871867 141871932 -10665327 + ID4_ SINE ID 1 68 -15 8 1667 281 356 93 13 chr5 141873076 141873227 -10664032 - MIR SINE MIR -59 203 41 8 1667 364 295 50 119 chr5 141873306 141873583 -10663676 - ORR1E LTR MaLR -6 353 96 8 1667 818 207 106 19 chr5 141873612 141873819 -10663440 - URR1B DNA MER1_type 0 225 1 8 1667 277 321 66 15 chr5 141876372 141876508 -10660751 - MIRc SINE MIR -51 217 75 8 1667 228 35 0 0 chr5 141878132 141878161 -10659098 + (TTG)n Simple_repeat Simple_repeat 2 30 0 8 1667 255 222 84 40 chr5 141878173 141878308 -10658951 - L1M5 LINE L1 -378 5862 5713 8 1667 309 68 0 0 chr5 141878354 141878398 -10658861 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 8 1667 537 245 0 0 chr5 141878421 141878527 -10658732 - RSINE1 SINE B4 -37 128 23 8 1667 268 329 0 0 chr5 141878641 141878720 -10658539 - L1M5 LINE L1 -653 5526 5448 8 1667 258 294 8 40 chr5 141881619 141881743 -10655516 - PB1D7 SINE Alu 0 120 1 8 1667 1252 223 112 12 chr5 141881791 141882131 -10655128 + MTEa LTR MaLR 4 377 -2 8 1667 610 302 72 27 chr5 141883118 141883492 -10653767 - L1MDa LINE L1 -4454 2179 1789 8 1667 489 97 35 17 chr5 141883578 141883693 -10653566 + (TCTCTG)n Simple_repeat Simple_repeat 2 118 0 8 1667 414 0 0 0 chr5 141883694 141883740 -10653519 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1667 285 224 102 30 chr5 141883960 141884126 -10653133 - L1MDa LINE L1 -5216 1417 1240 8 1667 22 0 0 0 chr5 141884148 141884170 -10653089 + AT_rich Low_complexity Low_complexity 1 22 0 8 1667 333 0 0 0 chr5 141884201 141884238 -10653021 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1667 219 296 0 18 chr5 141884291 141884346 -10652913 - RSINE1 SINE B4 -89 76 23 8 1667 290 197 74 62 chr5 141884380 141884461 -10652798 - B1_Mus1 SINE Alu -58 90 9 8 1667 276 239 31 52 chr5 141884461 141884475 -10652784 - ID_B1 SINE B4 -53 169 77 8 1667 371 258 57 44 chr5 141884475 141884633 -10652626 - L1MDa LINE L1 -5459 1174 1015 8 1667 468 0 0 0 chr5 141884669 141884721 -10652538 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1667 252 324 130 43 chr5 141885065 141885324 -10651935 - L1MDa LINE L1 -6114 519 230 8 1667 1061 239 76 65 chr5 141885324 141885458 -10651801 - ORR1D1 LTR MaLR -3 371 223 8 1667 492 18 0 0 chr5 141885458 141885515 -10651744 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1667 1061 239 76 65 chr5 141885515 141885747 -10651512 - ORR1D1 LTR MaLR -152 222 1 8 1667 252 324 130 43 chr5 141885747 141885787 -10651472 - L1MDa LINE L1 -6404 229 194 8 1667 180 0 0 0 chr5 141886011 141886031 -10651228 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 8 1667 369 0 0 0 chr5 141887976 141888017 -10649242 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1667 302 98 0 19 chr5 141888117 141888169 -10649090 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1667 213 323 151 0 chr5 141888174 141888366 -10648893 - B4A SINE B4 -24 268 48 8 1667 22 0 0 0 chr5 141888700 141888722 -10648537 + AT_rich Low_complexity Low_complexity 1 22 0 8 1667 1982 89 14 0 chr5 141889767 141890048 -10647211 - L1_Mus3 LINE L1 0 6638 6354 8 1667 245 102 41 0 chr5 141890358 141890407 -10646852 + (TAAAA)n Simple_repeat Simple_repeat 3 53 0 8 1667 820 242 0 48 chr5 141892892 141893100 -10644159 - B3A SINE B2 0 198 1 8 1667 269 295 27 0 chr5 141893127 141893222 -10644037 - PB1D10 SINE Alu -48 101 2 8 1667 674 218 20 13 chr5 141893272 141893421 -10643838 - B1_Mur4 SINE Alu 0 150 1 9 1667 696 83 0 0 chr5 141894050 141894146 -10643113 + (TG)n Simple_repeat Simple_repeat 1 96 0 9 1667 1194 293 119 22 chr5 141894175 141894797 -10642462 - L1MD2 LINE L1 -283 6467 5786 9 1667 699 258 22 6 chr5 141894897 141895076 -10642183 - B3A SINE B2 -16 182 1 9 1667 216 258 121 22 chr5 141895207 141895298 -10641961 - PB1D10 SINE Alu -17 100 1 9 1667 291 222 83 0 chr5 141895229 141895301 -10641958 - ID_B1 SINE B4 -68 156 79 9 1667 285 320 87 9 chr5 141895371 141895445 -10641814 - L1MD2 LINE L1 -1122 5415 5341 9 1667 243 0 0 0 chr5 141895445 141895472 -10641787 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1667 285 320 87 9 chr5 141895472 141895627 -10641632 - L1MD2 LINE L1 -1197 5340 5168 9 1667 568 294 145 31 chr5 141895810 141896225 -10641034 - L1MD2 LINE L1 -4611 2022 1561 9 1667 198 0 0 0 chr5 141896344 141896366 -10640893 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 9 1667 315 0 0 0 chr5 141896851 141896886 -10640373 + (CA)n Simple_repeat Simple_repeat 2 36 0 9 1667 1644 57 31 9 chr5 141896899 141897128 -10640131 - Lx3_Mus LINE L1 -2 7007 6774 9 1667 222 234 47 126 chr5 141897217 141897344 -10639915 + L2a LINE L2 3267 3383 -43 9 1667 21 0 0 0 chr5 141897985 141898006 -10639253 + AT_rich Low_complexity Low_complexity 1 21 0 9 1667 609 91 32 16 chr5 141901280 141901403 -10635856 + (TCTCTG)n Simple_repeat Simple_repeat 6 130 0 9 1667 506 270 0 150 chr5 141901723 141901910 -10635349 + RSINE1 SINE B4 5 163 -2 9 1667 807 204 0 0 chr5 141901942 141902084 -10635175 - B1_Mur1 SINE Alu -7 142 1 9 1667 197 65 32 0 chr5 141902127 141902158 -10635101 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 9 1667 390 21 0 0 chr5 141902499 141902546 -10634713 + (CA)n Simple_repeat Simple_repeat 1 47 0 9 1667 21 89 0 0 chr5 141903066 141903122 -10634137 + AT_rich Low_complexity Low_complexity 1 56 0 9 1667 498 193 37 136 chr5 141903128 141903290 -10633969 - ID_B1 SINE B4 -1 223 78 9 1667 35 0 0 0 chr5 141903423 141903458 -10633801 + AT_rich Low_complexity Low_complexity 1 35 0 9 1667 306 123 0 0 chr5 141903495 141903552 -10633707 + (TG)n Simple_repeat Simple_repeat 2 58 0 9 1667 21 36 0 0 chr5 141903764 141903792 -10633467 + AT_rich Low_complexity Low_complexity 1 28 0 9 1667 405 0 0 0 chr5 141903878 141903923 -10633336 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1667 813 177 189 22 chr5 141903961 141904146 -10633113 + B3 SINE B2 1 216 0 9 1667 378 272 197 7 chr5 141906732 141906869 -10630390 - RSINE1 SINE B4 0 165 3 9 1667 225 0 0 0 chr5 141907095 141907120 -10630139 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1667 246 308 32 21 chr5 141907224 141907317 -10629942 - B4 SINE B4 -191 101 8 9 1667 845 194 46 16 chr5 141907472 141907666 -10629593 + B3 SINE B2 7 206 -10 9 1667 682 282 86 19 chr5 141908424 141908681 -10628578 + B4A SINE B4 1 274 -18 9 1667 500 207 8 17 chr5 141909968 141910086 -10627173 - B1_Mur1 SINE Alu -1 148 32 9 1667 25 41 0 20 chr5 141910196 141910215 -10627044 + AT_rich Low_complexity Low_complexity 1 19 0 9 1667 805 142 14 21 chr5 141910215 141910359 -10626900 + B1_Mur4 SINE Alu 1 143 -7 9 1667 25 41 0 20 chr5 141910359 141910389 -10626870 + AT_rich Low_complexity Low_complexity 1 30 0 9 1667 186 43 0 0 chr5 141911050 141911073 -10626186 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9 1667 300 231 0 0 chr5 141911074 141911139 -10626120 - ID_B1 SINE B4 -63 161 97 9 1667 378 312 100 39 chr5 141911870 141912200 -10625059 - L1MEg LINE L1 -3120 3026 2677 9 1667 21 0 0 0 chr5 141912355 141912376 -10624883 + AT_rich Low_complexity Low_complexity 1 21 0 9 1667 244 274 16 0 chr5 141912537 141912599 -10624660 + MLT1D LTR MaLR 114 176 -329 9 1667 227 283 45 151 chr5 141913596 141913775 -10623484 - L1MEg LINE L1 -4640 1602 1443 9 1667 214 182 0 0 chr5 141914033 141914077 -10623182 + T-rich Low_complexity Low_complexity 1 44 0 9 1667 753 301 33 70 chr5 141914386 141914815 -10622444 - BGLII_B LTR ERVK -27 414 2 9 1667 380 279 21 104 chr5 141915024 141915168 -10622091 - ORR1E LTR MaLR -221 138 7 9 1667 449 279 126 52 chr5 141916575 141916946 -10620313 - MT2A LTR ERVL 0 554 93 9 1667 350 294 33 8 chr5 141917625 141917745 -10619514 - LTR33 LTR ERVL 0 515 393 9 1667 870 258 110 17 chr5 141918463 141918579 -10618680 - Lx8 LINE L1 -2 7471 7332 9 1667 318 26 0 0 chr5 141918579 141918618 -10618641 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 9 1667 870 258 110 17 chr5 141918618 141918793 -10618466 - Lx8 LINE L1 -142 7331 7153 9 1667 302 219 15 15 chr5 141918825 141918890 -10618369 - ID4_ SINE ID -17 66 2 9 1667 961 104 223 32 chr5 141919378 141919566 -10617693 + URR1A DNA MER1_type 3 226 0 9 1667 244 254 76 15 chr5 141919676 141919808 -10617451 - L1M2 LINE L1 -2159 3987 3848 9 1667 1208 61 0 0 chr5 141920028 141920175 -10617084 - B1_Mus2 SINE Alu 0 147 1 9 1667 1487 113 48 0 chr5 141920356 141920585 -10616674 - L1_Mus1 LINE L1 0 6567 6328 9 1667 256 275 49 12 chr5 141921632 141921713 -10615546 - MER58A DNA MER1_type -140 84 1 9 1667 340 316 36 22 chr5 141921886 141922025 -10615234 + MER106B DNA MER1_type 1 141 -918 9 1667 396 0 0 0 chr5 141922818 141922862 -10614397 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1667 244 23 0 85 chr5 141923017 141923064 -10614195 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 9 1667 363 230 0 0 chr5 141923064 141923177 -10614082 + (TG)n Simple_repeat Simple_repeat 1 113 0 9 1667 2481 107 96 0 chr5 141924940 141925324 -10611935 + MTC LTR MaLR 1 421 0 9 1667 226 255 137 0 chr5 141925837 141925939 -10611320 + MER5B DNA MER1_type 27 142 -36 9 1667 270 136 0 0 chr5 141926917 141926961 -10610298 + (TCC)n Simple_repeat Simple_repeat 2 45 0 9 1667 930 279 25 18 chr5 141927355 141927639 -10609620 + B4 SINE B4 1 286 -6 9 1667 444 271 124 88 chr5 141927822 141927915 -10609344 + B4 SINE B4 1 100 -192 9 1667 340 276 108 47 chr5 141927915 141928044 -10609215 + B1F2 SINE Alu 1 137 -12 9 1667 192 40 0 0 chr5 141928060 141928085 -10609174 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1667 300 53 0 0 chr5 141929508 141929546 -10607713 + (TG)n Simple_repeat Simple_repeat 2 39 0 9 1667 1080 260 4 48 chr5 141929558 141929829 -10607430 - B4A SINE B4 -22 270 12 9 1667 1144 217 0 7 chr5 141930726 141931000 -10606259 - RCHARR1 DNA MER1_type -138 836 565 9 1667 328 258 129 53 chr5 141931143 141931241 -10606018 - RCHARR1 DNA MER1_type -402 572 483 9 1667 249 33 0 0 chr5 141931241 141931271 -10605988 + (TTG)n Simple_repeat Simple_repeat 2 31 0 9 1667 328 258 129 53 chr5 141931271 141931381 -10605878 - RCHARR1 DNA MER1_type -492 482 348 9 1667 338 42 21 0 chr5 141933457 141933505 -10603754 + (TG)n Simple_repeat Simple_repeat 2 50 0 9 1667 654 292 35 114 chr5 141933505 141933795 -10603464 - B4A SINE B4 -23 269 3 9 1667 387 0 0 0 chr5 141933800 141933843 -10603416 + (TC)n Simple_repeat Simple_repeat 1 43 0 9 1667 225 0 0 0 chr5 141933843 141933867 -10603392 + (CA)n Simple_repeat Simple_repeat 1 25 0 9 1667 2873 41 3 0 chr5 141934934 141935277 -10601982 - L1_Mus1 LINE L1 0 6567 6224 9 1667 289 297 68 30 chr5 141935501 141935633 -10601626 + B1F2 SINE Alu 1 137 -12 9 1667 180 179 0 0 chr5 141935639 141935678 -10601581 + A-rich Low_complexity Low_complexity 4 42 0 9 1667 362 308 131 51 chr5 141935901 141936329 -10600930 - HAL1 LINE L1 -661 1846 1385 9 1667 3568 10 5 0 chr5 141936935 141937329 -10599930 - MTA_Mm LTR MaLR 0 396 1 9 1667 376 316 63 16 chr5 141937410 141937600 -10599659 - Tigger15a DNA TcMar -462 253 55 9 1667 438 20 0 0 chr5 141937755 141937806 -10599453 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 9 1667 345 244 0 49 chr5 141937841 141937923 -10599336 - B1F SINE Alu -59 90 13 9 1667 335 256 0 0 chr5 141939981 141940059 -10597200 + ID4 SINE ID 4 81 -2 9 1667 240 306 12 0 chr5 141940100 141940185 -10597074 + L1MB8 LINE L1 5756 5841 -337 9 1667 230 314 72 103 chr5 141940221 141940484 -10596775 + L1MB8 LINE L1 5834 6088 -90 9 1667 191 146 24 0 chr5 141941198 141941239 -10596020 + G-rich Low_complexity Low_complexity 3 44 0 9 1667 964 201 5 37 chr5 141941569 141941760 -10595499 - B3 SINE B2 -27 189 5 9 1667 988 214 15 15 chr5 141941789 141941993 -10595266 - ID_B1 SINE B4 -19 205 2 9 1667 600 77 0 0 chr5 141942337 141942428 -10594831 + (TC)n Simple_repeat Simple_repeat 2 92 0 9 1667 252 0 0 0 chr5 141942428 141942455 -10594804 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1667 710 274 46 19 chr5 141942472 141942750 -10594509 - L1M2 LINE L1 -513 5778 5491 9 1667 442 213 145 16 chr5 141942752 141942876 -10594383 + MER5B DNA MER1_type 33 172 -6 9 1667 303 352 13 58 chr5 141943573 141943727 -10593532 - Lx8 LINE L1 -246 7227 7081 9 1667 273 200 0 0 chr5 141943737 141943792 -10593467 - L1_Mur3 LINE L1 -2149 3731 3677 9 1667 311 291 53 26 chr5 141943888 141944040 -10593219 - L1_Rod LINE L1 -2181 3666 3511 9 1667 494 304 50 9 chr5 141945895 141946114 -10591145 - L1MC1 LINE L1 -156 6177 5950 9 1667 624 288 176 13 chr5 141946230 141946469 -10590790 + B4A SINE B4 10 287 -5 9 1667 273 233 0 0 chr5 141946504 141946594 -10590665 + (CA)n Simple_repeat Simple_repeat 1 90 0 9 1667 393 22 0 0 chr5 141946595 141946641 -10590618 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 1667 279 0 0 0 chr5 141946641 141946671 -10590588 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1667 673 304 43 21 chr5 141946726 141947055 -10590204 - L1MC1 LINE L1 -420 5913 5578 9 1667 426 290 61 65 chr5 141947072 141947286 -10589973 - ORR1E LTR MaLR -6 353 141 9 1667 423 285 50 14 chr5 141948013 141948152 -10589107 - MTD LTR MaLR -2 417 274 9 1667 412 226 129 73 chr5 141948169 141948293 -10588966 - MTD LTR MaLR -244 175 19 9 1667 4738 307 79 37 chr5 141948586 141949386 -10587873 - L1_Mur3 LINE L1 -448 5432 4593 9 1667 204 67 0 0 chr5 141949386 141949416 -10587843 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 9 1667 4738 307 79 37 chr5 141949416 141949503 -10587756 - L1_Mur3 LINE L1 -1288 4592 4511 9 1667 1460 70 16 0 chr5 141949503 141949689 -10587570 - B2_Mm2 SINE B2 -6 189 1 9 1667 4738 307 79 37 chr5 141949689 141949908 -10587351 - L1_Mur3 LINE L1 -1370 4510 4317 9 1667 901 208 118 0 chr5 141949908 141950086 -10587173 - B3 SINE B2 -16 200 2 1 1667 4738 307 79 37 chr5 141950086 141950281 -10586978 - L1_Mur3 LINE L1 -1564 4316 4147 9 1667 903 185 283 37 chr5 141950281 141950578 -10586681 - ORR1D2 LTR MaLR 0 370 1 1 208 4738 307 79 37 chr5 141950578 141952027 -10585232 - L1_Mur3 LINE L1 -1734 4146 2609 9 1668 6034 65 30 4 chr5 141952027 141952813 -10584446 - L1Md_F2 LINE L1 0 6582 5776 1 1668 4738 307 79 37 chr5 141952813 141953219 -10584040 - L1_Mur3 LINE L1 -3272 2608 2143 9 1668 664 90 180 0 chr5 141953244 141953366 -10583893 - Lx LINE L1 -3 6651 6508 1 1668 1770 142 113 31 chr5 141953505 141953684 -10583575 - ORR1C2 LTR MaLR 0 384 185 1 1668 456 105 0 0 chr5 141953684 141953760 -10583499 + (CAGAGA)n Simple_repeat Simple_repeat 1 76 0 1 1668 1770 142 113 31 chr5 141953760 141953935 -10583324 - ORR1C2 LTR MaLR -200 184 1 1 1668 236 368 0 0 chr5 141956102 141956189 -10581070 + (CA)n Simple_repeat Simple_repeat 2 88 0 1 1668 527 0 16 0 chr5 141957835 141957898 -10579361 + (TTATA)n Simple_repeat Simple_repeat 2 65 0 1 1668 315 307 146 28 chr5 141958779 141958923 -10578336 + RSINE1 SINE B4 5 165 0 1 1668 216 60 0 74 chr5 141959312 141959366 -10577893 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 1668 251 216 51 51 chr5 141959885 141959963 -10577296 - PB1D7 SINE Alu -1 119 42 1 1668 515 309 122 23 chr5 141960184 141960712 -10576547 - MLT1E2 LTR MaLR -22 658 2 1 1668 721 306 78 0 chr5 141961643 141961914 -10575345 - B4A SINE B4 0 292 1 1 1668 333 0 0 0 chr5 141961999 141962036 -10575223 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1668 30 45 0 0 chr5 141963180 141963224 -10574035 + AT_rich Low_complexity Low_complexity 1 44 0 1 1668 622 264 25 12 chr5 141964403 141964426 -10572833 - RSINE1 SINE B4 0 165 143 1 1668 357 24 0 0 chr5 141964426 141964468 -10572791 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1668 622 264 25 12 chr5 141964468 141964605 -10572654 - RSINE1 SINE B4 -23 142 3 1 1668 218 298 47 19 chr5 141964992 141965098 -10572161 - L2a LINE L2 -269 3157 3049 1 1668 429 319 121 46 chr5 141965119 141965467 -10571792 - L2a LINE L2 -469 2950 2577 1 1668 327 218 126 0 chr5 141965506 141965621 -10571638 + B2_Mm2 SINE B2 1 147 -51 1 1668 405 0 0 0 chr5 141965624 141965669 -10571590 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1668 387 0 0 0 chr5 141965669 141965711 -10571548 + (GA)n Simple_repeat Simple_repeat 2 44 0 1 1668 215 274 103 9 chr5 141966488 141966595 -10570664 - L2a LINE L2 -2044 1375 1259 1 1668 298 185 0 167 chr5 141967468 141967546 -10569713 - ID4_ SINE ID -7 76 12 1 1668 357 273 0 0 chr5 141967657 141967796 -10569463 + (TG)n Simple_repeat Simple_repeat 1 139 0 1 1668 211 317 86 50 chr5 141968664 141968966 -10568293 - L2 LINE L2 -343 3076 2764 1 1668 325 242 104 45 chr5 141970024 141970158 -10567101 + MLT1D LTR MaLR 40 181 -324 1 1668 407 287 60 40 chr5 141970196 141970345 -10566914 - RSINE1 SINE B4 -10 155 4 1 1668 246 254 52 73 chr5 141970634 141970770 -10566489 - MLT1A1 LTR MaLR -275 133 1 1 1668 457 279 96 19 chr5 141970812 141970969 -10566290 + MLT1D LTR MaLR 337 505 0 1 1668 1011 229 147 20 chr5 141971318 141971666 -10565593 + MTD LTR MaLR 13 404 -15 1 1668 776 258 73 59 chr5 141972674 141972946 -10564313 - B4 SINE B4 0 292 17 1 1668 917 102 14 0 chr5 141973057 141973204 -10564055 + (GAAA)n Simple_repeat Simple_repeat 3 151 0 1 1668 482 277 78 6 chr5 141973588 141973755 -10563504 - B3 SINE B2 0 216 38 1 1668 260 289 0 126 chr5 141974022 141974141 -10563118 - Tigger15a DNA TcMar 0 715 612 1 1668 243 0 0 0 chr5 141974644 141974671 -10562588 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1 1668 249 211 51 38 chr5 141974736 141974815 -10562444 - ID4_ SINE ID 0 83 4 1 1668 427 311 118 35 chr5 141975117 141975238 -10562021 - L1MB1 LINE L1 -16 6173 6046 1 1668 333 0 0 0 chr5 141975238 141975275 -10561984 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1668 521 316 113 31 chr5 141975275 141975835 -10561424 - L1MB1 LINE L1 -144 6045 5437 1 1668 395 217 69 115 chr5 141976005 141976135 -10561124 + RSINE1 SINE B4 1 124 -41 1 1668 522 0 0 0 chr5 141976598 141976656 -10560603 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1668 352 197 0 0 chr5 141978169 141978240 -10559019 - L1ME3 LINE L1 0 6162 6092 1 1668 351 314 110 45 chr5 141979241 141979441 -10557818 + ID_B1 SINE B4 2 214 -10 1 1668 1521 227 119 26 chr5 141979904 141980289 -10556970 + MTC LTR MaLR 1 421 0 1 1668 799 290 5 14 chr5 141980674 141980894 -10556365 + ID_B1 SINE B4 6 223 -1 1 1668 30 45 0 0 chr5 141980918 141980962 -10556297 + AT_rich Low_complexity Low_complexity 1 44 0 1 1668 437 148 0 12 chr5 141982017 141982099 -10555160 + (TA)n Simple_repeat Simple_repeat 1 81 0 1 1668 729 228 45 25 chr5 141982099 141982297 -10554962 - ID_B1 SINE B4 -20 204 3 1 1668 865 316 19 30 chr5 141983100 141983364 -10553895 - B4A SINE B4 -4 288 28 1 1668 24 67 0 0 chr5 141983696 141983741 -10553518 + AT_rich Low_complexity Low_complexity 1 45 0 1 1668 509 273 89 17 chr5 141983774 141983953 -10553306 + B3A SINE B2 3 194 -4 1 1668 27 0 0 0 chr5 141983972 141983999 -10553260 + AT_rich Low_complexity Low_complexity 1 27 0 1 1668 403 328 91 8 chr5 141984466 141984730 -10552529 + B4A SINE B4 1 286 -6 1 1668 812 270 33 12 chr5 141986643 141986883 -10550376 + B4A SINE B4 1 245 -47 1 1668 379 152 12 12 chr5 141986898 141986978 -10550281 + GA-rich Low_complexity Low_complexity 6 85 0 1 1668 195 69 0 0 chr5 141987010 141987039 -10550220 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1668 187 292 0 20 chr5 141987340 141987389 -10549870 + L2b LINE L2 3297 3344 -31 1 1668 867 249 6 9 chr5 141987762 141987964 -10549295 - B3 SINE B2 -8 208 6 1 1668 997 239 60 32 chr5 141988047 141988328 -10548931 - B4A SINE B4 0 292 4 1 1668 353 245 102 0 chr5 141988391 141988489 -10548770 - MER5A DNA MER1_type -78 111 4 1 1668 294 263 40 0 chr5 141989287 141989363 -10547896 - ID4 SINE ID 0 83 5 1 1668 651 248 22 0 chr5 141989495 141989632 -10547627 - B1F2 SINE Alu -8 141 2 1 1668 22 0 0 0 chr5 141989787 141989809 -10547450 + AT_rich Low_complexity Low_complexity 1 22 0 1 1668 355 314 0 54 chr5 141989963 141990111 -10547148 - B4 SINE B4 -152 140 1 1 1668 213 162 29 14 chr5 141990973 141991042 -10546217 + (TATG)n Simple_repeat Simple_repeat 1 70 0 1 1668 333 325 29 65 chr5 141991058 141991196 -10546063 - B4A SINE B4 -145 147 15 1 1668 22 0 0 0 chr5 141994303 141994325 -10542934 + AT_rich Low_complexity Low_complexity 1 22 0 1 1668 34 55 0 0 chr5 141994632 141994687 -10542572 + AT_rich Low_complexity Low_complexity 1 55 0 1 1668 384 56 27 27 chr5 141994848 141994921 -10542338 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 1 1668 304 228 10 80 chr5 141995039 141995139 -10542120 - L1M2 LINE L1 -472 5828 5736 1 1668 180 0 0 0 chr5 141995895 141995915 -10541344 + (CTTG)n Simple_repeat Simple_repeat 4 23 0 1 1668 240 204 0 0 chr5 141996530 141996574 -10540685 + L1MDb LINE L1 259 302 -6107 1 1668 355 343 54 0 chr5 141996748 141996987 -10540272 + L1MDb LINE L1 3055 3306 -3100 1 1668 422 281 92 0 chr5 141997019 141997172 -10540087 + ID_B1 SINE B4 1 167 -57 1 1668 778 243 86 13 chr5 141997310 141997614 -10539645 + L1MDb LINE L1 3347 3672 -2734 1 1668 458 272 104 22 chr5 141997591 141997813 -10539446 + L1MD2 LINE L1 6112 6351 -8 1 1668 589 291 69 12 chr5 141997968 141998215 -10539044 + MER2 DNA MER2_type 1 261 -84 1 1668 372 94 0 0 chr5 141998284 141998337 -10538922 + (TC)n Simple_repeat Simple_repeat 2 54 0 1 1668 1096 114 54 6 chr5 141998891 141999059 -10538200 + B2_Mm2 SINE B2 2 177 -18 1 1668 360 111 0 0 chr5 141999061 141999115 -10538144 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 1 1668 1704 161 122 19 chr5 141999122 141999484 -10537775 - MTC LTR MaLR -20 401 3 1 1668 583 243 21 0 chr5 141999754 141999898 -10537361 + B1F SINE Alu 1 147 -2 1 1668 194 309 10 41 chr5 142000870 142000968 -10536291 + L2b LINE L2 3276 3370 -5 1 1668 268 308 75 6 chr5 142001017 142001177 -10536082 - Charlie16a DNA MER1_type -35 307 137 2 1668 281 309 21 11 chr5 142001357 142001452 -10535807 + CT-rich Low_complexity Low_complexity 1 96 0 3 1668 588 254 30 6 chr5 142003602 142003768 -10533491 + ID_B1 SINE B4 2 171 -53 4 1668 452 300 15 8 chr5 142004271 142004402 -10532857 + B1_Mur4 SINE Alu 12 143 -7 5 1668 383 310 0 17 chr5 142004571 142004686 -10532573 + PB1D10 SINE Alu 5 117 0 6 1668 381 136 0 0 chr5 142005124 142005190 -10532069 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 1668 658 190 14 211 chr5 142005550 142005830 -10531429 - URR1B DNA MER1_type 0 225 1 8 1668 226 281 83 46 chr5 142005890 142006106 -10531153 + L1M4 LINE L1 3389 3612 -2534 9 1668 31031 30 0 0 chr5 142006907 142010545 -10526714 + L1_Mm LINE L1 2237 5874 -9 1 1668 930 224 137 20 chr5 142010688 142010943 -10526316 - Lx2B LINE L1 0 7000 6716 1 1668 948 226 50 0 chr5 142011173 142011372 -10525887 + B3 SINE B2 2 210 -6 1 1668 207 0 0 0 chr5 142014761 142014784 -10522475 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1668 719 245 53 66 chr5 142014787 142015014 -10522245 - B4A SINE B4 -24 268 45 1 1668 630 259 126 23 chr5 142017507 142017768 -10519491 + B4 SINE B4 2 289 -3 1 1668 345 299 94 19 chr5 142018040 142018200 -10519059 - MLT1A LTR MaLR 0 390 219 1 1668 804 132 0 0 chr5 142018215 142018344 -10518915 + (TTC)n Simple_repeat Simple_repeat 1 129 0 1 1668 214 224 13 38 chr5 142019590 142019669 -10517590 + (TG)n Simple_repeat Simple_repeat 1 77 0 1 1668 281 227 0 39 chr5 142019693 142019872 -10517387 + (TG)n Simple_repeat Simple_repeat 1 172 0 1 1668 481 269 0 42 chr5 142019896 142020228 -10517031 + (TG)n Simple_repeat Simple_repeat 1 317 0 1 1668 773 276 129 4 chr5 142020241 142020496 -10516763 - B4A SINE B4 -4 288 2 1 1668 229 329 118 0 chr5 142020823 142020908 -10516351 + B4 SINE B4 195 289 -3 2 1668 561 15 0 0 chr5 142020915 142020981 -10516278 + (TC)n Simple_repeat Simple_repeat 1 66 0 2 1668 234 0 0 0 chr5 142020981 142021006 -10516253 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 1668 186 125 0 59 chr5 142022216 142022267 -10514992 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1668 962 283 32 7 chr5 142022281 142022566 -10514693 - B4A SINE B4 0 292 1 2 1668 621 0 0 0 chr5 142022699 142022768 -10514491 + (CACAG)n Simple_repeat Simple_repeat 3 71 0 2 1668 423 241 17 8 chr5 142024985 142025102 -10512157 + LTR16D1 LTR ERVL 541 658 -17 2 1668 620 239 133 0 chr5 142026746 142026934 -10510325 + ID_B1 SINE B4 3 215 -9 2 1668 768 116 23 28 chr5 142027385 142027562 -10509697 + GA-rich Low_complexity Low_complexity 3 178 0 2 1668 432 0 0 0 chr5 142027563 142027611 -10509648 + (GGGAA)n Simple_repeat Simple_repeat 1 48 0 2 1668 1174 91 215 0 chr5 142027803 142027989 -10509270 - URR1A DNA MER1_type 0 226 1 3 1668 1074 258 68 18 chr5 142028116 142028455 -10508804 - ORR1E LTR MaLR 0 359 4 3 1668 187 331 72 52 chr5 142028462 142028615 -10508644 + MIRm SINE MIR 116 271 -5 3 1668 369 0 0 0 chr5 142028918 142028959 -10508300 + (TC)n Simple_repeat Simple_repeat 1 41 0 3 1668 495 0 0 0 chr5 142028960 142029015 -10508244 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 1668 682 305 66 40 chr5 142029025 142029206 -10508053 - B4 SINE B4 -4 288 113 3 1668 279 0 0 0 chr5 142029206 142029237 -10508022 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 1668 682 305 66 40 chr5 142029237 142029328 -10507931 - B4 SINE B4 -180 112 11 3 1668 291 317 40 0 chr5 142030049 142030150 -10507109 - MIRb SINE MIR -73 195 91 3 1668 685 244 120 92 chr5 142031936 142032220 -10505039 + B4A SINE B4 1 292 0 3 1668 180 0 0 0 chr5 142032272 142032292 -10504967 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 1668 219 146 0 0 chr5 142033422 142033463 -10503796 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 4 1668 791 210 10 62 chr5 142033501 142033709 -10503550 + ID_B1 SINE B4 21 217 -7 4 1668 264 278 69 0 chr5 142034253 142034351 -10502908 + MIR SINE MIR 57 170 -106 4 1668 776 281 66 129 chr5 142034394 142035027 -10502232 - L1MB7 LINE L1 -9 6175 5583 4 1668 320 240 8 0 chr5 142036008 142036129 -10501130 + (TA)n Simple_repeat Simple_repeat 1 122 0 4 1668 782 249 6 39 chr5 142037289 142037508 -10499751 + B3A SINE B2 7 198 0 4 1668 1035 78 170 0 chr5 142037632 142037785 -10499474 - B2_Mm2 SINE B2 -14 181 3 4 1668 832 294 92 21 chr5 142037954 142038412 -10498847 - L1MD1 LINE L1 -283 5959 5460 4 1668 198 0 0 0 chr5 142038423 142038445 -10498814 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1668 448 238 69 0 chr5 142038483 142038584 -10498675 - B3A SINE B2 -83 115 8 4 1668 308 310 75 19 chr5 142038604 142038765 -10498494 - L1MD1 LINE L1 -924 5435 5266 4 1668 759 203 2 7 chr5 142038831 142039286 -10497973 + (CA)n Simple_repeat Simple_repeat 1 452 0 5 1668 739 243 52 6 chr5 142039430 142039604 -10497655 - B3A SINE B2 -16 182 1 5 1668 1605 285 89 61 chr5 142039640 142040277 -10496982 - L1MD1 LINE L1 -1036 5110 4467 4 1668 964 228 5 34 chr5 142040277 142040481 -10496778 - B3A SINE B2 0 198 1 5 1668 1605 285 89 61 chr5 142040481 142041175 -10496084 - L1MD1 LINE L1 -1680 4466 3742 4 1668 4378 180 20 14 chr5 142041179 142042021 -10495238 - Lx5 LINE L1 -2 7048 6202 5 1668 481 245 0 0 chr5 142042101 142042203 -10495056 - U6 snRNA snRNA -5 102 1 5 1668 473 310 28 14 chr5 142042275 142042419 -10494840 - RSINE1 SINE B4 -19 146 1 5 1668 227 285 82 20 chr5 142042421 142042568 -10494691 - L1MC LINE L1 -2392 3754 3599 5 1668 426 289 91 51 chr5 142042935 142043344 -10493915 - L1MD1 LINE L1 -3033 3113 2689 4 1668 260 65 43 0 chr5 142044359 142044405 -10492854 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 5 1668 192 303 70 10 chr5 142044805 142044905 -10492354 + L2a LINE L2 3114 3219 -207 5 1668 410 377 0 16 chr5 142045108 142045294 -10491965 - Tigger9a DNA Tigger -549 183 1 5 1668 386 235 99 56 chr5 142045296 142045458 -10491801 + L2a LINE L2 3258 3426 0 5 1668 1669 283 34 77 chr5 142046149 142046964 -10490295 + Charlie1a DNA MER1_type 30 809 -646 6 1668 234 0 0 0 chr5 142048505 142048531 -10488728 + (TG)n Simple_repeat Simple_repeat 2 27 0 6 1668 928 303 22 14 chr5 142048570 142048848 -10488411 - B4 SINE B4 -11 281 2 6 1668 694 309 57 23 chr5 142049521 142049786 -10487473 + B4A SINE B4 1 274 -18 6 1668 239 291 0 81 chr5 142049791 142049877 -10487382 + B4A SINE B4 126 204 -88 6 1668 372 43 0 0 chr5 142049967 142050013 -10487246 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1668 381 43 0 0 chr5 142050013 142050059 -10487200 + (GA)n Simple_repeat Simple_repeat 2 48 0 6 1668 396 259 8 25 chr5 142050766 142050885 -10486374 - PB1D10 SINE Alu 0 117 1 6 1668 302 82 41 0 chr5 142051168 142051217 -10486042 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 6 1668 937 114 22 11 chr5 142051234 142051412 -10485847 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 6 1668 453 19 0 0 chr5 142051412 142051466 -10485793 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 6 1668 695 281 81 5 chr5 142052437 142052659 -10484600 + B4 SINE B4 1 239 -53 7 1668 395 268 12 84 chr5 142052657 142052824 -10484435 + RSINE1 SINE B4 11 165 0 7 1668 1710 136 175 62 chr5 142053666 142054020 -10483239 + ORR1B1 LTR MaLR 1 394 0 7 1668 302 259 25 0 chr5 142055258 142055339 -10481920 - ID4_ SINE ID 0 83 1 7 1668 1197 132 0 66 chr5 142055339 142055565 -10481694 - ZP3AR Satellite Satellite -11 211 1 7 1668 2900 72 5 56 chr5 142055892 142056336 -10480923 - BGLII LTR ERVK 0 421 1 7 1668 1963 209 10 20 chr5 142056388 142056794 -10480465 - MTD LTR MaLR 0 419 18 7 1668 184 296 105 53 chr5 142056964 142057078 -10480181 - MIR3 SINE MIR -33 175 56 7 1668 727 322 23 15 chr5 142057388 142057647 -10479612 + B4A SINE B4 1 261 -31 7 1668 826 162 7 21 chr5 142057754 142057899 -10479360 + B1_Mur4 SINE Alu 2 144 -6 7 1668 3399 296 115 53 chr5 142059271 142061419 -10475840 - Lx7 LINE L1 -1771 5925 3645 8 1668 273 29 0 0 chr5 142061419 142061453 -10475806 + (TCTG)n Simple_repeat Simple_repeat 1 34 0 8 1668 3399 293 116 50 chr5 142061453 142061870 -10475389 - Lx7 LINE L1 -2450 3693 3260 8 1668 991 97 17 17 chr5 142061870 142062048 -10475211 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 8 1668 3399 294 116 50 chr5 142062048 142062861 -10474398 - Lx7 LINE L1 -2884 3259 2364 8 1668 220 150 0 48 chr5 142062867 142062930 -10474329 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 8 1668 359 285 57 50 chr5 142063029 142063188 -10474071 - B4A SINE B4 -131 161 2 8 1668 921 199 11 16 chr5 142063384 142063568 -10473691 - B3 SINE B2 -3 213 31 8 1668 851 250 28 37 chr5 142063609 142063825 -10473434 - B3 SINE B2 -2 214 1 8 1668 194 0 39 0 chr5 142064335 142064361 -10472898 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 8 1668 354 289 146 44 chr5 142064366 142064572 -10472687 - HAL1-3A_ME LINE L1 -657 2201 1975 8 1668 873 268 117 3 chr5 142065039 142065340 -10471919 - MTE2b LTR MaLR -44 335 1 8 1668 252 120 0 0 chr5 142065493 142065543 -10471716 + (CAAAA)n Simple_repeat Simple_repeat 4 53 0 9 1668 405 0 0 0 chr5 142065793 142065838 -10471421 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1668 827 179 45 21 chr5 142065897 142066188 -10471071 + CT-rich Low_complexity Low_complexity 1 298 0 9 1668 946 119 6 12 chr5 142066188 142066350 -10470909 + (TTCCC)n Simple_repeat Simple_repeat 3 163 0 9 1668 437 214 25 33 chr5 142066353 142066474 -10470785 - B4 SINE B4 -82 210 91 9 1668 460 183 114 9 chr5 142066525 142066630 -10470629 - B4 SINE B4 -175 117 2 9 1668 219 289 79 0 chr5 142068032 142068108 -10469151 - ID4 SINE ID 0 83 2 9 1668 1112 236 63 16 chr5 142068534 142068853 -10468406 - MTE2b LTR MaLR -4 375 72 9 1668 2492 178 15 16 chr5 142068853 142069356 -10467903 - RLTR11A LTR ERVK -1 527 1 9 1668 277 320 0 10 chr5 142069356 142069443 -10467816 - MTE2b LTR MaLR -293 86 1 9 1668 529 298 93 44 chr5 142069982 142070326 -10466933 + L1MEc LINE L1 125 485 -5915 9 1668 414 333 63 26 chr5 142070390 142070658 -10466601 + L1MEc LINE L1 639 916 -5484 9 1668 272 283 24 55 chr5 142070961 142071088 -10466171 + L1MEc LINE L1 4285 4407 -1912 9 1668 252 0 0 0 chr5 142073113 142073141 -10464118 + (CA)n Simple_repeat Simple_repeat 1 28 0 9 1668 284 263 0 0 chr5 142073741 142073798 -10463461 - ID4_ SINE ID -26 57 1 1 1668 677 250 54 0 chr5 142073874 142074058 -10463201 - ID_B1 SINE B4 -28 196 3 1 1668 35367 68 4 39 chr5 142075215 142081399 -10455860 - L1Md_F2 LINE L1 -1 6581 621 1 1669 473 335 65 35 chr5 142082996 142083228 -10454031 - B4A SINE B4 -22 270 32 1 1669 350 294 146 9 chr5 142083227 142083337 -10453922 - B4 SINE B4 -166 126 2 1 1669 549 280 12 31 chr5 142083511 142083673 -10453586 + RSINE1 SINE B4 3 161 -4 1 1669 336 302 87 26 chr5 142083869 142084100 -10453159 - L1MB1 LINE L1 -291 5898 5654 1 1669 2012 116 0 51 chr5 142084103 142084438 -10452821 - ORR1A3 LTR MaLR -8 318 1 1 1669 904 260 95 33 chr5 142085402 142085708 -10451551 - ORR1E LTR MaLR -34 325 1 1 1669 377 250 20 20 chr5 142086202 142086304 -10450955 + ID_B1 SINE B4 107 208 -16 1 1669 378 0 0 0 chr5 142086310 142086352 -10450907 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1 1669 620 261 11 96 chr5 142086392 142086570 -10450689 + RSINE1 SINE B4 3 165 0 1 1669 441 0 0 0 chr5 142086575 142086624 -10450635 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 1 1669 560 208 159 8 chr5 142087821 142087947 -10449312 + B1_Mur1 SINE Alu 4 148 -1 1 1669 249 139 0 0 chr5 142087963 142088006 -10449253 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 1 1669 803 266 94 0 chr5 142088024 142088280 -10448979 + B4A SINE B4 12 291 -1 1 1669 198 0 0 0 chr5 142089309 142089331 -10447928 + (ACCG)n Simple_repeat Simple_repeat 1 22 0 1 1669 469 252 198 50 chr5 142089829 142090071 -10447188 - B4 SINE B4 -13 279 2 1 1669 343 337 55 0 chr5 142091760 142091923 -10445336 - MIRb SINE MIR -69 199 28 1 1669 256 264 157 62 chr5 142092073 142092251 -10445008 - L2 LINE L2 -745 2674 2480 1 1669 331 96 0 37 chr5 142092253 142092307 -10444952 - HAL1-3A_ME LINE L1 -831 2027 1976 1 1669 255 223 9 0 chr5 142092378 142092600 -10444659 + (TG)n Simple_repeat Simple_repeat 1 224 0 1 1669 365 174 16 114 chr5 142093400 142093523 -10443736 + MT2B LTR ERVL 154 264 -337 1 1669 835 124 23 0 chr5 142093420 142093549 -10443710 + B1_Mur3 SINE Alu 9 140 -9 1 1669 214 247 12 47 chr5 142094938 142095023 -10442236 + CT-rich Low_complexity Low_complexity 6 87 0 1 1669 1066 254 21 35 chr5 142095243 142095532 -10441727 + B4 SINE B4 6 290 -2 1 1669 288 0 0 0 chr5 142095553 142095585 -10441674 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1669 440 219 9 42 chr5 142095721 142095883 -10441376 - L1ME2 LINE L1 -1781 6004 5845 1 1669 367 256 96 0 chr5 142095896 142096021 -10441238 - MIR SINE MIR 0 262 126 1 1669 272 149 0 0 chr5 142096351 142096398 -10440861 - L1MB4 LINE L1 -8 6172 6126 1 1669 353 289 123 71 chr5 142096446 142096658 -10440601 - B4A SINE B4 -2 290 68 1 1669 408 285 26 119 chr5 142096722 142097194 -10440065 - Lx2 LINE L1 -1235 5762 5374 1 1669 1487 110 62 115 chr5 142099282 142099621 -10437638 - ORR1A4 LTR MaLR -8 321 1 1 1669 1115 264 44 13 chr5 142099625 142099943 -10437316 + MTE2b LTR MaLR 1 328 -51 1 1669 1107 83 12 12 chr5 142099938 142100108 -10437151 + B2_Mm2 SINE B2 25 194 -1 1 1669 1668 179 57 60 chr5 142100149 142100534 -10436725 - ORR1C2 LTR MaLR 0 384 1 1 1669 427 276 102 109 chr5 142102439 142102457 -10434802 - B4A SINE B4 0 292 275 1 1669 258 32 0 0 chr5 142102457 142102488 -10434771 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1669 427 276 102 109 chr5 142102488 142102762 -10434497 - B4A SINE B4 -18 274 2 1 1669 583 305 53 34 chr5 142102769 142103034 -10434225 - L1MB8 LINE L1 0 6178 5909 1 1669 322 221 29 0 chr5 142103355 142103423 -10433836 + B4 SINE B4 2 71 -221 1 1669 245 340 10 20 chr5 142104096 142104195 -10433064 - PB1D10 SINE Alu -9 108 11 1 1669 365 262 86 71 chr5 142104128 142104268 -10432991 - ID_B1 SINE B4 -65 159 18 1 1669 1079 235 79 55 chr5 142105691 142106034 -10431225 - MTE2a LTR MaLR -13 366 16 1 1669 1072 162 193 180 chr5 142106039 142106490 -10430769 + MT2A LTR ERVL 3 459 -74 1 1669 257 113 0 16 chr5 142106570 142106633 -10430626 + MT2A LTR ERVL 465 526 -7 1 1669 747 328 95 0 chr5 142107023 142107319 -10429940 + Tigger7 DNA MER2_type 9 332 -2159 1 1669 298 343 10 0 chr5 142107394 142107493 -10429766 + Tigger7 DNA MER2_type 2392 2491 0 1 1669 392 51 17 0 chr5 142107936 142107995 -10429264 + (TTAG)n Simple_repeat Simple_repeat 4 63 0 1 1669 626 294 104 5 chr5 142108037 142108249 -10429010 - B4A SINE B4 -57 235 3 1 1669 351 0 0 0 chr5 142110043 142110082 -10427177 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1669 249 270 0 0 chr5 142112092 142112155 -10425104 - MLT1A1 LTR MaLR -284 124 62 1 1669 200 111 0 27 chr5 142112552 142112589 -10424670 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1669 636 264 0 46 chr5 142112589 142112740 -10424519 - RSINE1 SINE B4 -20 145 2 1 1669 524 256 14 14 chr5 142112804 142112943 -10424316 - ORR1E LTR MaLR -1 378 240 1 1669 403 353 0 0 chr5 142112943 142113099 -10424160 + G-rich Low_complexity Low_complexity 1 156 0 1 1669 634 281 44 22 chr5 142113106 142113335 -10423924 - ORR1E LTR MaLR -111 248 15 1 1669 22 0 0 0 chr5 142113642 142113664 -10423595 + AT_rich Low_complexity Low_complexity 1 22 0 1 1669 1014 204 36 40 chr5 142113700 142113925 -10423334 - ID_B1 SINE B4 0 224 1 1 1669 243 0 0 0 chr5 142114703 142114730 -10422529 + (CAGAG)n Simple_repeat Simple_repeat 1 27 0 1 1669 2498 44 2 175 chr5 142115684 142116153 -10421106 + RLTR10 LTR ERVK 1 388 -2 1 1669 17433 24 0 0 chr5 142116165 142118109 -10419150 + RLTR10-int LTR ERVK 41 1984 -3 1 1669 2751 32 25 148 chr5 142118111 142118556 -10418703 + RLTR10 LTR ERVK 1 390 0 1 1669 789 337 17 24 chr5 142118571 142118860 -10418399 + B4A SINE B4 2 288 -4 1 1669 414 329 37 25 chr5 142119676 142119838 -10417421 - B3A SINE B2 -31 167 4 1 1669 673 261 82 26 chr5 142119838 142120056 -10417203 - B4A SINE B4 -59 233 3 1 1669 791 244 67 59 chr5 142120504 142120743 -10416516 + B4 SINE B4 2 242 -50 1 1669 249 108 0 0 chr5 142120775 142120812 -10416447 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1669 333 0 0 0 chr5 142120812 142120848 -10416411 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1669 473 326 78 11 chr5 142121774 142121954 -10415305 - MER63A DNA AcHobo -2 208 17 1 1669 446 324 139 9 chr5 142122185 142122509 -10414750 + L2a LINE L2 2459 2824 -595 1 1669 819 234 57 47 chr5 142123376 142123747 -10413512 + L1MD LINE L1 5212 5582 -660 1 1669 459 350 32 6 chr5 142123774 142123918 -10413341 + RSINE1 SINE B4 4 151 -14 1 1669 216 0 0 0 chr5 142123918 142123942 -10413317 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1669 459 350 32 6 chr5 142123942 142123955 -10413304 + RSINE1 SINE B4 152 164 -1 1 1669 788 162 7 0 chr5 142124001 142124149 -10413110 + (TA)n Simple_repeat Simple_repeat 2 150 0 1 1669 356 328 16 0 chr5 142124158 142124286 -10412973 + L1M5 LINE L1 5593 5722 -457 1 1669 217 246 15 15 chr5 142124356 142124422 -10412837 + ID4_ SINE ID 16 81 -2 1 1669 196 289 141 20 chr5 142124615 142124714 -10412545 + L2a LINE L2 3316 3426 0 1 1669 326 316 26 0 chr5 142124857 142124971 -10412288 - L1MD1 LINE L1 -380 5862 5746 1 1669 199 54 0 51 chr5 142124971 142125010 -10412249 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1 1669 395 255 0 39 chr5 142125012 142125114 -10412145 - ID_B1 SINE B4 -11 213 116 1 1669 546 333 73 5 chr5 142125294 142125499 -10411760 + B4A SINE B4 51 269 -23 1 1669 338 180 10 29 chr5 142125532 142125635 -10411624 + (TA)n Simple_repeat Simple_repeat 1 101 0 1 1669 347 271 30 40 chr5 142126633 142126733 -10410526 + RSINE1 SINE B4 67 165 0 1 1669 681 239 7 121 chr5 142126933 142127214 -10410045 + L1_Mur1 LINE L1 30 278 -6704 1 1669 629 217 40 80 chr5 142127217 142127417 -10409842 - ORR1D1 LTR MaLR -175 199 8 1 1669 474 266 145 6 chr5 142127418 142127577 -10409682 + ID_B1 SINE B4 42 222 -2 1 1669 439 313 130 53 chr5 142127650 142128173 -10409086 + L1MD1 LINE L1 5652 6214 -28 1 1669 329 281 37 37 chr5 142129175 142129282 -10407977 + Cheshire DNA MER1_type 174 280 -2140 1 1669 2046 174 161 8 chr5 142129353 142129868 -10407391 - MT2B LTR ERVL 0 601 8 1 1669 229 290 10 79 chr5 142130246 142130347 -10406912 + MIR3 SINE MIR 70 163 -45 1 1669 26 0 0 0 chr5 142130642 142130668 -10406591 + AT_rich Low_complexity Low_complexity 1 26 0 1 1669 21 0 0 0 chr5 142130954 142130975 -10406284 + AT_rich Low_complexity Low_complexity 1 21 0 1 1669 180 0 0 0 chr5 142131520 142131540 -10405719 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1669 245 309 171 29 chr5 142131547 142131687 -10405572 + B3A SINE B2 2 161 -34 1 1669 760 257 52 19 chr5 142131785 142131995 -10405264 + ID_B1 SINE B4 1 217 -7 1 1669 595 145 25 21 chr5 142132857 142133097 -10404162 + (TA)n Simple_repeat Simple_repeat 1 241 0 1 1669 22 35 0 0 chr5 142133123 142133152 -10404107 + AT_rich Low_complexity Low_complexity 1 29 0 1 1669 259 303 0 13 chr5 142133177 142133254 -10404005 + GA-rich Low_complexity Low_complexity 3 78 0 1 1669 302 306 43 43 chr5 142133335 142133475 -10403784 - L2c LINE L2 0 3387 3248 1 1669 258 105 0 0 chr5 142133736 142133774 -10403485 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1669 684 234 35 35 chr5 142133853 142134052 -10403207 - B4A SINE B4 0 292 94 1 1669 252 0 0 0 chr5 142135506 142135534 -10401725 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1669 304 292 164 75 chr5 142135551 142135710 -10401549 - B4A SINE B4 -118 174 2 1 1669 5347 131 11 1 chr5 142136223 142137046 -10400213 - Lx4A LINE L1 -2 7056 6226 1 1669 1926 200 44 20 chr5 142137047 142137543 -10399716 - RLTR11A LTR ERVK -4 524 1 1 1669 1876 115 57 6 chr5 142137543 142137858 -10399401 - Lx4A LINE L1 -824 6234 5904 1 1669 387 0 0 0 chr5 142137970 142138013 -10399246 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1669 344 302 42 0 chr5 142138520 142138639 -10398620 - B4A SINE B4 -168 124 1 2 1669 228 205 0 0 chr5 142139318 142139357 -10397902 + polypyrimidine Low_complexity Low_complexity 2 40 0 2 1669 720 231 13 75 chr5 142139361 142139600 -10397659 - ID_B1 SINE B4 0 224 1 2 1669 2196 137 26 0 chr5 142140044 142140423 -10396836 - ORR1B1 LTR MaLR 0 394 6 2 1669 775 284 5 47 chr5 142141228 142141439 -10395820 + ID_B1 SINE B4 1 202 -22 2 1669 451 45 30 0 chr5 142142251 142142317 -10394942 + (CA)n Simple_repeat Simple_repeat 2 69 0 2 1669 370 293 177 24 chr5 142142335 142142754 -10394505 + L1MD LINE L1 3708 4190 -1956 2 1669 380 284 50 36 chr5 142142756 142142895 -10394364 + RSINE1 SINE B4 8 148 -17 2 1669 346 316 118 11 chr5 142142949 142143221 -10394038 + L1MD LINE L1 4178 4478 -1668 2 1669 501 245 106 64 chr5 142143426 142143644 -10393615 + L1MD LINE L1 4633 4859 -1287 2 1669 640 293 39 57 chr5 142143710 142143989 -10393270 + B4 SINE B4 2 275 -17 2 1669 432 149 14 0 chr5 142143997 142144071 -10393188 - RLTR11A2 LTR ERVK 0 527 453 2 1669 1119 221 23 60 chr5 142144329 142144628 -10392631 - B4A SINE B4 0 292 5 2 1669 884 271 112 12 chr5 142144928 142145186 -10392073 - B4 SINE B4 0 292 9 2 1669 193 291 204 41 chr5 142146435 142146582 -10390677 - L2a LINE L2 0 3426 3256 2 1669 725 282 19 107 chr5 142147300 142147618 -10389641 + B4 SINE B4 3 292 0 2 1669 197 254 17 17 chr5 142148919 142148979 -10388280 + MIRc SINE MIR 98 157 -111 2 1669 851 233 15 35 chr5 142149052 142149252 -10388007 + B3A SINE B2 3 198 0 2 1669 378 306 0 9 chr5 142150241 142150350 -10386909 + PB1D10 SINE Alu 2 109 -8 2 1669 730 251 6 34 chr5 142150845 142151022 -10386237 + B4 SINE B4 2 173 -119 2 1669 302 269 27 63 chr5 142150940 142151051 -10386208 + B1_Mur1 SINE Alu 7 113 -36 2 1669 399 339 0 27 chr5 142151065 142151250 -10386009 + (CAGC)n Simple_repeat Simple_repeat 1 180 0 2 1669 256 352 0 24 chr5 142151263 142151388 -10385871 + (CAGC)n Simple_repeat Simple_repeat 1 122 0 2 1669 2340 73 41 0 chr5 142151497 142151811 -10385448 + ORR1A2 LTR MaLR 1 327 0 2 1669 550 271 82 24 chr5 142152400 142152608 -10384651 + ID_B1 SINE B4 1 220 -4 2 1669 1087 201 31 16 chr5 142152619 142152877 -10384382 + B4A SINE B4 26 287 -5 2 1669 453 245 211 57 chr5 142153341 142153588 -10383671 - B4A SINE B4 -6 286 2 2 1669 323 136 17 0 chr5 142153601 142153660 -10383599 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 2 1669 753 194 22 0 chr5 142153660 142153799 -10383460 - B1_Mur3 SINE Alu -6 143 2 2 1669 582 242 19 31 chr5 142153997 142154078 -10383181 + B4A SINE B4 12 90 -202 2 1669 220 294 54 0 chr5 142154078 142154170 -10383089 + PB1D7 SINE Alu 3 99 -21 2 1669 414 0 0 0 chr5 142154233 142154279 -10382980 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 1669 270 0 0 0 chr5 142154870 142154900 -10382359 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 1669 258 250 0 0 chr5 142154947 142155067 -10382192 + (CA)n Simple_repeat Simple_repeat 1 120 0 2 1669 731 348 49 24 chr5 142155128 142155679 -10381580 + L1MD LINE L1 4160 4724 -1422 2 1669 412 272 35 49 chr5 142156370 142156513 -10380746 + B4A SINE B4 3 143 -149 2 1669 1450 156 74 8 chr5 142158182 142158599 -10378660 - ZP3AR Satellite Satellite -30 444 1 2 1669 509 187 0 7 chr5 142160078 142160218 -10377041 + (TG)n Simple_repeat Simple_repeat 2 140 0 2 1669 878 268 79 30 chr5 142160221 142160487 -10376772 - B4A SINE B4 -2 290 12 2 1669 1284 266 82 13 chr5 142160872 142161249 -10376010 + Lx8 LINE L1 6930 7332 -141 2 1669 288 200 0 0 chr5 142161991 142162056 -10375203 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 1669 1891 81 131 65 chr5 142162063 142162369 -10374890 + ORR1A3 LTR MaLR 1 326 0 2 1669 609 257 46 80 chr5 142162458 142162660 -10374599 - B3A SINE B2 -6 192 2 2 1669 490 313 79 43 chr5 142163679 142163959 -10373300 + B4A SINE B4 2 291 -1 2 1669 462 290 35 0 chr5 142164027 142164172 -10373087 - L1MC3 LINE L1 -223 7562 7413 2 1669 249 252 124 19 chr5 142164184 142164289 -10372970 - L1MC3 LINE L1 -456 7329 7214 2 1669 791 268 52 157 chr5 142164461 142164861 -10372398 + MTE2b LTR MaLR 1 357 -22 2 1669 918 103 0 0 chr5 142164861 142164997 -10372262 + L1_Mus1 LINE L1 6432 6567 0 2 1669 791 268 52 157 chr5 142164997 142165017 -10372242 + MTE2b LTR MaLR 358 377 -2 2 1669 227 56 56 0 chr5 142165017 142165053 -10372206 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 2 1669 452 229 208 31 chr5 142165118 142165332 -10371927 + B4 SINE B4 41 292 0 2 1669 541 317 14 5 chr5 142166132 142166341 -10370918 + ID_B1 SINE B4 3 213 -11 2 1669 180 0 0 0 chr5 142166755 142166775 -10370484 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1669 1092 241 127 14 chr5 142167014 142167344 -10369915 + ORR1D2 LTR MaLR 3 394 0 2 1669 475 158 29 0 chr5 142168035 142168174 -10369085 + (TCTG)n Simple_repeat Simple_repeat 2 144 0 2 1669 213 39 0 0 chr5 142168225 142168251 -10369008 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 1669 926 282 22 19 chr5 142168268 142168539 -10368720 - B4A SINE B4 -15 277 6 2 1669 264 174 0 0 chr5 142168896 142168942 -10368317 - MLT1H2 LTR MaLR -378 111 66 2 1669 1096 94 28 10 chr5 142170043 142170336 -10366923 + (GAAA)n Simple_repeat Simple_repeat 1 298 0 2 1669 333 156 62 0 chr5 142170340 142170404 -10366855 - MTE2a LTR MaLR 0 379 312 2 1669 208 102 20 20 chr5 142170417 142170467 -10366792 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 2 1669 387 317 48 37 chr5 142170486 142170673 -10366586 - B4A SINE B4 -103 189 1 2 1669 426 306 138 23 chr5 142171302 142171606 -10365653 - L1M4 LINE L1 -5275 1267 929 2 1669 550 267 36 15 chr5 142171628 142171765 -10365494 - RSINE1 SINE B4 -2 163 24 2 1669 503 282 74 63 chr5 142171977 142172084 -10365175 - B4A SINE B4 -100 192 92 2 1669 2313 87 15 61 chr5 142172084 142172427 -10364832 + ORR1A2 LTR MaLR 1 327 0 2 1669 503 282 74 63 chr5 142172427 142172508 -10364751 - B4A SINE B4 -201 91 2 2 1669 1064 296 63 49 chr5 142172516 142173146 -10364113 - L1M4 LINE L1 -5818 724 86 2 1669 3485 18 5 5 chr5 142173773 142174169 -10363090 - MTA_Mm LTR MaLR 0 396 1 2 1669 213 94 0 0 chr5 142175193 142175225 -10362034 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2 1669 405 58 0 0 chr5 142175261 142175313 -10361946 + (GGGA)n Simple_repeat Simple_repeat 1 52 0 2 1669 414 0 0 0 chr5 142175357 142175403 -10361856 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 1669 249 304 130 0 chr5 142175491 142175606 -10361653 - B4 SINE B4 -138 154 25 2 1669 423 0 0 0 chr5 142175630 142175677 -10361582 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2 1669 398 362 78 68 chr5 142175958 142176358 -10360901 + MER34A LTR ERV1 56 459 -112 2 1669 376 179 64 0 chr5 142176362 142176440 -10360819 - ID4 SINE ID 0 83 1 2 1669 1011 155 12 0 chr5 142176440 142176601 -10360658 - ZP3AR Satellite Satellite -11 201 39 2 1669 309 277 52 26 chr5 142176610 142176725 -10360534 + MER34A LTR ERV1 454 571 0 2 1669 1000 267 28 25 chr5 142177415 142177699 -10359560 - B4 SINE B4 -4 288 4 2 1669 850 311 71 18 chr5 142177990 142178313 -10358946 - RMER5 LTR ERV1 -4 530 190 2 1669 2492 149 12 26 chr5 142178313 142178740 -10358519 - MTC LTR MaLR 0 421 1 2 1669 423 226 33 50 chr5 142178745 142178866 -10358393 - RMER5 LTR ERV1 -367 167 49 2 1669 1991 57 26 4 chr5 142179088 142179354 -10357905 + L1Md_F3 LINE L1 6312 6583 -1 2 1669 330 67 0 0 chr5 142179658 142179703 -10357556 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1669 252 0 0 0 chr5 142179771 142179799 -10357460 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 1669 642 268 89 68 chr5 142180020 142180300 -10356959 + B4A SINE B4 7 292 0 2 1669 236 343 114 34 chr5 142180421 142180596 -10356663 + MIR SINE MIR 12 200 -62 2 1669 570 264 14 41 chr5 142180788 142180934 -10356325 + B1_Mur1 SINE Alu 8 149 0 2 1669 488 267 199 0 chr5 142181470 142181646 -10355613 - B4A SINE B4 -80 212 2 2 1669 257 348 63 7 chr5 142181676 142181818 -10355441 + L1M4c LINE L1 934 1083 -6251 2 1669 1825 172 38 27 chr5 142182417 142182583 -10354676 + ORR1D1 LTR MaLR 1 167 -207 2 1669 718 41 20 0 chr5 142182583 142182681 -10354578 + (TC)n Simple_repeat Simple_repeat 2 101 0 2 1669 1825 172 38 27 chr5 142182681 142182884 -10354375 + ORR1D1 LTR MaLR 168 374 0 2 1669 764 296 55 5 chr5 142183036 142183236 -10354023 + B4A SINE B4 71 280 -12 2 1669 391 315 139 31 chr5 142183384 142184112 -10353147 + L1M4c LINE L1 1628 2516 -4586 2 1669 549 30 0 0 chr5 142184113 142184180 -10353079 + (GA)n Simple_repeat Simple_repeat 1 67 0 2 1669 668 297 46 157 chr5 142184447 142184879 -10352380 - MTD LTR MaLR -17 402 19 2 1669 528 319 91 49 chr5 142185053 142185462 -10351797 + L1MCb LINE L1 188 613 -5432 2 1669 1060 274 29 23 chr5 142185557 142185863 -10351396 - RMER5 LTR ERV1 -2 532 225 2 1669 192 184 80 20 chr5 142186229 142186279 -10350980 - L2a LINE L2 -35 3391 3339 2 1669 251 310 0 80 chr5 142186437 142186574 -10350685 + G-rich Low_complexity Low_complexity 2 127 0 2 1669 1209 262 3 46 chr5 142187100 142187404 -10349855 + B4A SINE B4 2 292 0 2 1669 270 208 83 0 chr5 142187413 142187429 -10349830 + ID_B1 SINE B4 70 145 -77 2 1669 318 135 0 37 chr5 142187429 142187483 -10349776 + B1_Mur4 SINE Alu 9 60 -90 2 1669 439 233 9 46 chr5 142187585 142187652 -10349607 + B1_Mur2 SINE Alu 40 106 -43 2 1669 633 115 0 0 chr5 142187652 142187748 -10349511 + (CA)n Simple_repeat Simple_repeat 2 97 0 2 1669 439 233 9 46 chr5 142187748 142187788 -10349471 + B1_Mur2 SINE Alu 107 143 -6 2 1669 528 241 186 75 chr5 142188849 142189037 -10348222 + B4 SINE B4 3 211 -81 2 1669 481 269 19 129 chr5 142189067 142189276 -10347983 + B4A SINE B4 107 292 0 2 1669 288 328 0 0 chr5 142189316 142189377 -10347882 + B4 SINE B4 232 292 0 2 1669 193 177 16 16 chr5 142189420 142189461 -10347798 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 2 1669 204 40 0 0 chr5 142189461 142189486 -10347773 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1669 193 177 16 16 chr5 142189486 142189507 -10347752 + (CATATA)n Simple_repeat Simple_repeat 1 21 0 3 1669 983 81 12 12 chr5 142190012 142190174 -10347085 + (TG)n Simple_repeat Simple_repeat 2 163 0 3 1669 339 264 22 161 chr5 142190225 142190482 -10346777 - MER31A LTR ERV1 -116 369 25 3 1669 420 20 0 0 chr5 142190571 142190620 -10346639 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 1669 439 253 42 0 chr5 142190631 142190726 -10346533 - B4 SINE B4 -19 273 175 3 1669 700 251 113 0 chr5 142190728 142190923 -10346336 - ID_B1 SINE B4 -7 217 1 3 1669 389 104 30 0 chr5 142191058 142191125 -10346134 + (TTCC)n Simple_repeat Simple_repeat 1 69 0 3 1669 374 298 121 8 chr5 142191125 142191257 -10346002 - HAL1-3A_ME LINE L1 -420 2438 2292 3 1669 1322 103 38 0 chr5 142191794 142191978 -10345281 - B2_Mm2 SINE B2 -4 191 1 3 1669 1332 246 21 17 chr5 142192247 142192537 -10344722 + B4A SINE B4 2 292 0 3 1669 840 220 2 0 chr5 142192537 142193010 -10344249 + (CA)n Simple_repeat Simple_repeat 1 473 0 3 1669 524 259 29 15 chr5 142193610 142193747 -10343512 + B1F SINE Alu 1 139 -10 3 1669 505 240 0 10 chr5 142193822 142193919 -10343340 + PB1D7 SINE Alu 18 113 -7 3 1669 452 291 109 143 chr5 142194448 142194741 -10342518 + B4A SINE B4 10 292 0 3 1669 282 164 0 0 chr5 142194759 142194814 -10342445 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 1669 311 230 92 0 chr5 142195263 142195350 -10341909 - ID_B1 SINE B4 0 224 130 3 1669 288 312 95 48 chr5 142195629 142195797 -10341462 - B4 SINE B4 -116 176 1 3 1669 538 282 92 0 chr5 142195797 142195936 -10341323 - ID_B1 SINE B4 -72 152 1 3 1669 500 300 21 14 chr5 142196102 142196244 -10341015 + B4A SINE B4 2 144 -148 3 1669 229 279 114 29 chr5 142196282 142196352 -10340907 + RSINE1 SINE B4 88 163 -2 3 1669 603 295 19 87 chr5 142196388 142196700 -10340559 + B4A SINE B4 2 292 0 3 1669 378 0 0 0 chr5 142197769 142197811 -10339448 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 1669 456 191 0 0 chr5 142197929 142198023 -10339236 + (TG)n Simple_repeat Simple_repeat 2 95 0 3 1669 222 245 0 0 chr5 142198023 142198072 -10339187 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 1669 1118 83 14 0 chr5 142198119 142198263 -10338996 - B1_Mus2 SINE Alu 0 147 2 3 1669 211 340 41 0 chr5 142199274 142199371 -10337888 + PB1D7 SINE Alu 18 118 -2 3 1669 1591 47 10 4 chr5 142199369 142200236 -10337023 + ZP3AR Satellite Satellite 1 871 0 3 1669 468 313 164 0 chr5 142200470 142200837 -10336422 - L1MC4a LINE L1 -174 7821 7395 3 1669 496 294 94 97 chr5 142201074 142201413 -10335846 + ORR1E LTR MaLR 21 358 -1 3 1669 476 363 71 26 chr5 142201413 142201678 -10335581 - MER21B LTR ERV1 -478 385 109 3 1669 486 314 63 36 chr5 142201792 142202123 -10335136 - L1MC4a LINE L1 -636 7359 7020 3 1669 203 146 0 24 chr5 142202155 142202197 -10335062 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 3 1669 508 218 207 21 chr5 142202200 142202279 -10334980 - B4 SINE B4 0 292 208 3 1669 450 0 0 0 chr5 142202279 142202329 -10334930 + (TC)n Simple_repeat Simple_repeat 1 50 0 3 1669 508 218 207 21 chr5 142202329 142202394 -10334865 - B4 SINE B4 -85 207 123 3 1669 256 214 0 0 chr5 142202461 142202517 -10334742 - L1MC4a LINE L1 -927 7068 7013 3 1669 244 273 29 43 chr5 142202524 142202593 -10334666 - ID4_ SINE ID 0 83 16 3 1669 1229 248 37 111 chr5 142202866 142203270 -10333989 + MTE2a LTR MaLR 6 379 0 3 1669 913 219 98 30 chr5 142203273 142203508 -10333751 + B4 SINE B4 40 290 -2 3 1669 1675 157 65 49 chr5 142203537 142203905 -10333354 - ORR1D1 LTR MaLR 0 374 1 3 1669 502 244 60 48 chr5 142204043 142204211 -10333048 - B3 SINE B2 0 216 47 3 1669 742 304 44 11 chr5 142204313 142204586 -10332673 - L1MC4a LINE L1 -1306 6576 6295 3 1669 938 259 40 16 chr5 142204967 142205218 -10332041 + ID_B1 SINE B4 9 270 -22 3 1669 182 65 0 61 chr5 142205390 142205423 -10331836 + (TATG)n Simple_repeat Simple_repeat 4 34 0 3 1669 1025 264 35 42 chr5 142205444 142205732 -10331527 - B4 SINE B4 -4 288 3 3 1669 504 0 0 0 chr5 142206704 142206760 -10330499 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 1669 639 303 119 30 chr5 142206765 142207000 -10330259 - B4 SINE B4 -10 282 27 3 1669 831 12 84 6 chr5 142207147 142207313 -10329946 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1669 265 305 40 63 chr5 142207358 142207484 -10329775 + MER20B DNA MER1_type 234 356 -427 3 1669 270 0 0 0 chr5 142207484 142207514 -10329745 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 3 1669 369 0 0 0 chr5 142207583 142207624 -10329635 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1669 351 309 84 21 chr5 142207784 142207926 -10329333 + B3 SINE B2 66 216 0 3 1669 583 289 144 18 chr5 142208239 142208461 -10328798 + B4A SINE B4 43 292 0 3 1669 273 303 34 0 chr5 142208466 142208555 -10328704 + (CATATA)n Simple_repeat Simple_repeat 2 93 0 3 1669 446 322 70 35 chr5 142208806 142209266 -10327993 - L1ME2z LINE L1 -1 6443 5968 3 1669 670 284 199 12 chr5 142209404 142209650 -10327609 - B4A SINE B4 0 292 1 3 1669 732 216 31 16 chr5 142209855 142210048 -10327211 - MER20B DNA MER1_type -18 765 570 3 1669 534 193 118 7 chr5 142210042 142210178 -10327081 + Charlie1a DNA MER1_type 1112 1262 -193 3 1669 650 281 50 0 chr5 142210207 142210406 -10326853 - ID_B1 SINE B4 -3 221 13 3 1669 604 274 52 23 chr5 142210418 142210605 -10326654 - B3A SINE B2 -5 190 1 3 1669 241 196 20 0 chr5 142210806 142210857 -10326402 - L1ME2z LINE L1 -272 5901 5850 3 1669 765 238 43 17 chr5 142211019 142211254 -10326005 + MER20B DNA MER1_type 517 757 -26 3 1669 348 24 0 0 chr5 142212097 142212138 -10325121 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 3 1669 459 0 0 0 chr5 142212714 142212765 -10324494 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1670 219 240 13 51 chr5 142213245 142213324 -10323935 + CT-rich Low_complexity Low_complexity 4 79 0 3 1670 245 268 0 0 chr5 142213325 142213381 -10323878 - PB1D7 SINE Alu -63 57 2 3 1670 214 349 48 0 chr5 142213908 142213971 -10323288 - ID4 SINE ID -16 67 2 3 1670 802 188 100 0 chr5 142214780 142214940 -10322319 - B3 SINE B2 0 216 41 3 1670 246 263 123 90 chr5 142214971 142215272 -10321987 - RMER17C LTR ERVK -60 350 40 3 1670 1555 247 47 50 chr5 142215442 142215907 -10321352 - RMER5 LTR ERV1 0 534 71 3 1670 180 125 0 0 chr5 142215925 142215957 -10321302 + (CCCCCA)n Simple_repeat Simple_repeat 3 34 0 3 1670 267 128 0 0 chr5 142215965 142216004 -10321255 - RMER5 LTR ERV1 -480 54 16 3 1670 1111 326 56 23 chr5 142217048 142217603 -10319656 + Lx8 LINE L1 6808 7380 -93 3 1670 1321 249 31 57 chr5 142217778 142218278 -10318981 + RMER20B LTR ERVK 2 516 0 3 1670 248 307 105 21 chr5 142218568 142218711 -10318548 - L1MDb LINE L1 -6112 297 143 3 1670 495 345 72 69 chr5 142218776 142219081 -10318178 - MLT1H LTR MaLR -128 421 116 3 1670 279 179 38 162 chr5 142219099 142219179 -10318080 - B4 SINE B4 0 292 223 3 1670 321 311 32 8 chr5 142219208 142219331 -10317928 - RSINE1 SINE B4 -9 156 31 3 1670 637 299 69 5 chr5 142219328 142219530 -10317729 - B4 SINE B4 -63 229 15 3 1670 235 270 103 77 chr5 142219882 142219957 -10317302 - L1MB3 LINE L1 0 6183 6103 3 1670 629 255 102 58 chr5 142219957 142219980 -10317279 - B4A SINE B4 -2 290 272 3 1670 190 81 54 0 chr5 142219980 142220017 -10317242 + (TATG)n Simple_repeat Simple_repeat 1 39 0 3 1670 629 255 102 58 chr5 142220017 142220268 -10316991 - B4A SINE B4 -21 271 4 3 1670 235 270 103 77 chr5 142220268 142220453 -10316806 - L1MB3 LINE L1 -81 6102 5917 3 1670 258 288 109 33 chr5 142220462 142220645 -10316614 - L1MB2 LINE L1 -174 5997 5801 3 1670 408 255 0 21 chr5 142220714 142220810 -10316449 - B4A SINE B4 -196 96 3 3 1670 1274 213 56 37 chr5 142220822 142221231 -10316028 - L1M4c LINE L1 -4070 2576 2160 3 1670 442 350 0 6 chr5 142221233 142221394 -10315865 + RSINE1 SINE B4 3 162 -3 3 1670 720 158 8 40 chr5 142221532 142221657 -10315602 - B1_Mur4 SINE Alu -12 138 18 3 1670 339 296 85 52 chr5 142221813 142221966 -10315293 - HAL1-3A_ME LINE L1 -6 2852 2695 3 1670 255 277 84 0 chr5 142221986 142222069 -10315190 - L1M4c LINE L1 -4834 1812 1723 3 1670 289 274 98 21 chr5 142222154 142222389 -10314870 - L1M4c LINE L1 -5180 1466 1214 3 1670 324 175 8 38 chr5 142222389 142222520 -10314739 + (TG)n Simple_repeat Simple_repeat 1 127 0 3 1670 518 200 11 17 chr5 142222536 142222891 -10314368 + (TG)n Simple_repeat Simple_repeat 1 352 0 3 1670 507 271 18 72 chr5 142222902 142223069 -10314190 - RSINE1 SINE B4 0 165 8 3 1670 382 221 32 21 chr5 142223072 142223182 -10314077 - L1M4c LINE L1 -5425 1221 1104 3 1670 548 279 133 64 chr5 142223224 142223374 -10313885 - B4A SINE B4 -10 282 123 3 1670 273 29 0 0 chr5 142223374 142223408 -10313851 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 1670 548 279 133 64 chr5 142223408 142223521 -10313738 - B4A SINE B4 -170 122 1 3 1670 777 277 200 43 chr5 142223521 142224151 -10313108 - L1M4c LINE L1 -5533 1113 385 3 1670 1004 249 19 0 chr5 142225173 142225378 -10311881 + ID_B1 SINE B4 8 216 -8 3 1670 232 281 99 22 chr5 142225583 142225674 -10311585 - MIRc SINE MIR -13 255 158 3 1670 192 40 0 0 chr5 142225909 142225934 -10311325 + (TATG)n Simple_repeat Simple_repeat 4 28 0 3 1670 776 301 67 30 chr5 142225943 142226213 -10311046 - B4A SINE B4 -4 288 9 3 1670 285 91 68 0 chr5 142226308 142226352 -10310907 - ORR1B1 LTR MaLR -8 386 340 3 1670 2005 104 57 71 chr5 142226443 142226795 -10310464 - ORR1B1 LTR MaLR -47 347 1 3 1670 323 222 46 17 chr5 142228382 142228556 -10308703 + (TG)n Simple_repeat Simple_repeat 2 180 0 3 1670 328 181 48 144 chr5 142228752 142228939 -10308320 - HAL1-2a_MD LINE L1 -513 2511 2343 3 1670 261 197 26 72 chr5 142228945 142229098 -10308161 + (TTGTG)n Simple_repeat Simple_repeat 3 148 0 3 1670 591 273 166 12 chr5 142229145 142229386 -10307873 - B4A SINE B4 -10 282 5 3 1670 435 250 68 81 chr5 142229520 142229668 -10307591 + ID_B1 SINE B4 84 233 -59 3 1670 221 0 35 0 chr5 142229871 142229900 -10307359 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 3 1670 405 0 0 0 chr5 142230206 142230251 -10307008 + (TC)n Simple_repeat Simple_repeat 2 46 0 3 1670 273 29 0 0 chr5 142230261 142230295 -10306964 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1670 387 105 0 0 chr5 142231706 142231763 -10305496 + (TCC)n Simple_repeat Simple_repeat 1 57 0 3 1670 581 248 21 21 chr5 142232113 142232253 -10305006 + RMER15 LTR ERVL 338 477 -98 3 1670 888 172 0 0 chr5 142232409 142232578 -10304681 + (TG)n Simple_repeat Simple_repeat 2 170 0 3 1670 318 151 19 0 chr5 142232587 142232640 -10304619 - HAL1-3A_ME LINE L1 -831 2027 1974 4 1670 221 143 41 0 chr5 142233408 142233457 -10303802 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 4 1670 429 20 0 0 chr5 142233458 142233508 -10303751 + (TG)n Simple_repeat Simple_repeat 1 50 0 4 1670 493 249 112 116 chr5 142233573 142233805 -10303454 - B4 SINE B4 -22 270 40 4 1670 511 264 84 28 chr5 142234576 142234790 -10302469 + MIR SINE MIR 11 236 -26 4 1670 810 222 66 208 chr5 142235213 142235651 -10301608 - MTE2b LTR MaLR -3 376 1 4 1670 2822 72 40 25 chr5 142235688 142236085 -10301174 - MTB_Mm LTR MaLR -4 403 1 4 1670 219 69 0 0 chr5 142236710 142236739 -10300520 + (CATA)n Simple_repeat Simple_repeat 1 29 0 4 1670 654 214 3 0 chr5 142236745 142237088 -10300171 + (TCCA)n Simple_repeat Simple_repeat 1 343 0 4 1670 257 159 0 16 chr5 142237114 142237178 -10300081 + (TCCA)n Simple_repeat Simple_repeat 3 65 0 4 1670 312 278 21 0 chr5 142237253 142237397 -10299862 + (CCCA)n Simple_repeat Simple_repeat 2 148 0 4 1670 428 186 0 9 chr5 142238388 142238502 -10298757 + CT-rich Low_complexity Low_complexity 2 114 0 4 1670 402 21 0 0 chr5 142238552 142238599 -10298660 + (TG)n Simple_repeat Simple_repeat 2 48 0 4 1670 1071 187 85 57 chr5 142239112 142239395 -10297864 + B4 SINE B4 1 291 -1 4 1670 623 140 29 12 chr5 142239395 142239568 -10297691 + (CA)n Simple_repeat Simple_repeat 1 176 0 4 1670 848 183 0 0 chr5 142239923 142240065 -10297194 + URR1A DNA MER1_type 79 220 -6 4 1670 744 43 0 0 chr5 142240362 142240454 -10296805 + (TG)n Simple_repeat Simple_repeat 1 92 0 4 1670 632 278 12 6 chr5 142240454 142240624 -10296635 + B4 SINE B4 122 292 0 4 1670 326 151 14 0 chr5 142240636 142240709 -10296550 + (CA)n Simple_repeat Simple_repeat 1 74 0 4 1670 37 52 0 0 chr5 142241593 142241651 -10295608 + AT_rich Low_complexity Low_complexity 1 58 0 4 1670 457 186 0 6 chr5 142241827 142241916 -10295343 + B1F SINE Alu 40 124 -23 4 1670 1437 0 0 33 chr5 142242135 142242319 -10294940 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 4 1670 1366 136 32 12 chr5 142242320 142242573 -10294686 + BGLII LTR ERVK 159 416 -5 4 1670 329 328 8 8 chr5 142242874 142242997 -10294262 - L1MC4a LINE L1 -221 7661 7539 4 1670 394 291 156 61 chr5 142243032 142243110 -10294149 - B4A SINE B4 -4 288 1 4 1670 657 262 81 11 chr5 142243110 142243295 -10293964 - B3A SINE B2 0 198 1 4 1670 409 245 32 0 chr5 142243295 142243376 -10293883 - B4A SINE B4 -61 231 148 4 1670 319 266 96 101 chr5 142243413 142243551 -10293708 - L1MC4a LINE L1 -662 7220 7088 4 1670 921 113 28 7 chr5 142243551 142243693 -10293566 + B1_Mur4 SINE Alu 1 145 -5 4 1670 319 266 96 101 chr5 142243693 142243763 -10293496 - L1MC4a LINE L1 -795 7087 7013 4 1670 952 128 0 22 chr5 142243932 142244304 -10292955 + (TG)n Simple_repeat Simple_repeat 1 363 0 4 1670 798 148 0 17 chr5 142244333 142244512 -10292747 + (TG)n Simple_repeat Simple_repeat 1 176 0 4 1670 902 289 22 19 chr5 142244549 142244817 -10292442 - B4A SINE B4 -23 269 1 4 1670 405 0 0 0 chr5 142245503 142245548 -10291711 + (TG)n Simple_repeat Simple_repeat 2 46 0 4 1670 818 314 10 43 chr5 142245739 142246039 -10291220 + B4 SINE B4 1 290 -2 4 1670 198 0 0 0 chr5 142246512 142246534 -10290725 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1670 780 234 12 30 chr5 142246560 142246727 -10290532 - B3 SINE B2 -48 168 5 4 1670 552 240 62 31 chr5 142246739 142246868 -10290391 - ID_B1 SINE B4 -8 216 84 4 1670 257 221 29 0 chr5 142247550 142247618 -10289641 - L1MC4a LINE L1 -11 7871 7802 4 1670 636 317 57 20 chr5 142247755 142248217 -10289042 - L1MD2 LINE L1 -364 5995 5508 4 1670 251 282 120 15 chr5 142248807 142248940 -10288319 - L1MD2 LINE L1 -872 5274 5128 4 1670 826 253 95 52 chr5 142249074 142249558 -10287701 - L1MD2 LINE L1 -1129 5017 4513 4 1670 358 237 13 0 chr5 142249561 142249637 -10287622 - MTEa LTR MaLR -2 377 301 4 1670 1104 278 29 61 chr5 142249658 142249969 -10287290 - MTEa LTR MaLR -57 322 22 4 1670 634 318 78 43 chr5 142250195 142250540 -10286719 + ORR1E LTR MaLR 3 359 0 4 1670 338 274 12 0 chr5 142250587 142250671 -10286588 + B4 SINE B4 2 86 -206 4 1670 643 199 76 24 chr5 142250671 142250882 -10286377 + L1MA8 LINE L1 6052 6273 -18 4 1670 810 221 164 50 chr5 142250903 142251165 -10286094 + B4 SINE B4 1 292 0 4 1670 266 226 174 0 chr5 142251401 142251516 -10285743 - L1MC5 LINE L1 -1055 6906 6772 4 1670 773 292 21 21 chr5 142251733 142251974 -10285285 - Lx8 LINE L1 -783 6690 6450 4 1670 919 254 54 71 chr5 142252356 142252653 -10284606 + B4 SINE B4 1 292 0 4 1670 251 328 54 71 chr5 142253574 142253758 -10283501 - MIR SINE MIR -64 198 18 4 1670 366 228 38 0 chr5 142254223 142254302 -10282957 - ID4_ SINE ID 0 83 2 4 1670 323 321 136 52 chr5 142254923 142255173 -10282086 - ORR1E LTR MaLR -12 347 77 4 1670 2199 145 9 0 chr5 142255223 142255560 -10281699 - ORR1B1 LTR MaLR -2 392 53 4 1670 1263 245 3 49 chr5 142255590 142255895 -10281364 - MTD LTR MaLR -32 387 97 4 1670 198 281 95 19 chr5 142257457 142257562 -10279697 + L4 LINE RTE 222 334 -1695 4 1670 297 0 0 0 chr5 142257597 142257630 -10279629 + (TG)n Simple_repeat Simple_repeat 2 34 0 4 1670 1212 257 7 10 chr5 142257657 142257948 -10279311 - B4A SINE B4 -2 290 1 4 1670 1701 34 0 0 chr5 142258640 142259217 -10278042 - ZP3AR Satellite Satellite -21 577 1 4 1670 1141 201 5 14 chr5 142259243 142259455 -10277804 + B3 SINE B2 1 210 -6 4 1670 854 285 33 85 chr5 142260038 142260345 -10276914 + B4 SINE B4 2 292 0 4 1670 486 225 0 0 chr5 142260345 142260487 -10276772 + (CA)n Simple_repeat Simple_repeat 1 142 0 4 1670 679 190 6 16 chr5 142260538 142260720 -10276539 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1670 858 219 38 14 chr5 142261313 142261526 -10275733 - ID_B1 SINE B4 -5 219 2 4 1670 1114 260 128 15 chr5 142262576 142262947 -10274312 - MTD LTR MaLR -31 388 1 4 1670 681 270 76 116 chr5 142262979 142263281 -10273978 + B4 SINE B4 3 292 0 4 1670 623 280 116 28 chr5 142263588 142263838 -10273421 + B4A SINE B4 3 274 -18 4 1670 234 0 0 0 chr5 142264809 142264835 -10272424 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1670 185 265 0 12 chr5 142264992 142265076 -10272183 + (TG)n Simple_repeat Simple_repeat 1 83 0 4 1670 402 369 6 0 chr5 142265108 142265284 -10271975 + (TG)n Simple_repeat Simple_repeat 2 178 0 4 1670 238 265 0 56 chr5 142265298 142265478 -10271781 + (TATG)n Simple_repeat Simple_repeat 4 173 0 4 1670 959 226 112 54 chr5 142265495 142265771 -10271488 - B4A SINE B4 0 292 1 4 1670 1805 209 16 11 chr5 142265944 142266321 -10270938 + MTE2a LTR MaLR 1 379 0 4 1670 610 236 56 31 chr5 142266499 142266661 -10270598 - RMER30 DNA MER1_type -36 166 1 4 1670 2008 120 199 16 chr5 142266868 142267250 -10270009 - RLTR25A LTR ERVK 0 1103 652 4 1670 378 243 0 0 chr5 142267246 142267316 -10269943 - RLTR25A LTR ERVK -1033 70 1 4 1670 500 232 0 20 chr5 142267604 142267705 -10269554 - B4 SINE B4 -4 288 190 4 1670 2148 229 36 16 chr5 142267705 142268211 -10269048 + RMER20A LTR ERVK 1 516 0 4 1670 1425 209 80 45 chr5 142268231 142268410 -10268849 - ORR1D1 LTR MaLR -26 348 167 4 1670 612 73 0 0 chr5 142268410 142268492 -10268767 + (GGGA)n Simple_repeat Simple_repeat 4 85 0 4 1670 1425 209 80 45 chr5 142268492 142268648 -10268611 - ORR1D1 LTR MaLR -208 166 1 4 1670 747 289 12 0 chr5 142268648 142268814 -10268445 - B4 SINE B4 -122 170 3 4 1670 183 114 0 0 chr5 142269252 142269287 -10267972 + (A)n Simple_repeat Simple_repeat 1 35 0 4 1670 572 182 8 68 chr5 142269459 142269577 -10267682 + RSINE1 SINE B4 2 112 -53 4 1670 324 0 0 0 chr5 142269579 142269615 -10267644 + (CA)n Simple_repeat Simple_repeat 2 37 0 4 1670 291 385 29 15 chr5 142269654 142269791 -10267468 + B1F SINE Alu 1 139 -10 4 1670 390 100 0 0 chr5 142270369 142270429 -10266830 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1670 630 214 48 0 chr5 142270730 142270856 -10266403 - B1_Mur4 SINE Alu -2 148 17 4 1670 573 275 61 76 chr5 142270766 142270963 -10266296 - B4A SINE B4 -98 194 1 4 1670 531 284 133 29 chr5 142270963 142271172 -10266087 - B4A SINE B4 -60 232 2 4 1670 34 0 0 0 chr5 142272386 142272420 -10264839 + AT_rich Low_complexity Low_complexity 1 34 0 4 1670 359 173 12 0 chr5 142273235 142273316 -10263943 + (TG)n Simple_repeat Simple_repeat 1 82 0 4 1670 782 322 54 36 chr5 142273326 142273606 -10263653 - B4A SINE B4 0 292 8 4 1670 353 258 120 91 chr5 142275045 142275220 -10262039 + B3A SINE B2 5 184 -14 4 1670 849 71 0 0 chr5 142275234 142275347 -10261912 + (TA)n Simple_repeat Simple_repeat 1 113 0 4 1670 1020 239 5 5 chr5 142275396 142275598 -10261661 + ID_B1 SINE B4 2 203 -21 4 1670 510 294 131 86 chr5 142275941 142276361 -10260898 - RLTR11A2 LTR ERVK -63 464 26 4 1670 429 359 24 28 chr5 142276400 142276652 -10260607 - Charlie7 DNA MER1_type -2148 464 214 4 1670 709 184 10 0 chr5 142276820 142277036 -10260223 + (TGGA)n Simple_repeat Simple_repeat 1 218 0 4 1670 295 286 0 0 chr5 142277090 142277160 -10260099 + ID4 SINE ID 2 71 -12 4 1670 693 234 154 46 chr5 142277225 142277485 -10259774 + B4 SINE B4 1 288 -4 4 1670 774 310 46 58 chr5 142277679 142278110 -10259149 + Charlie2b DNA MER1_type 2340 2765 -17 4 1670 1804 181 47 53 chr5 142278395 142278775 -10258484 - ORR1C1 LTR MaLR 0 378 1 4 1670 532 171 14 0 chr5 142279281 142279421 -10257838 + (TG)n Simple_repeat Simple_repeat 2 143 0 4 1670 940 269 46 134 chr5 142279424 142279707 -10257552 - B4A SINE B4 0 292 35 4 1670 635 222 43 76 chr5 142280413 142280623 -10256636 + B3 SINE B2 1 203 -13 4 1670 1420 257 29 23 chr5 142281207 142281554 -10255705 - MTE2b LTR MaLR -15 364 16 4 1670 795 169 0 8 chr5 142281591 142281710 -10255549 - B1_Mus1 SINE Alu -12 136 19 4 1670 293 297 131 15 chr5 142281969 142282099 -10255160 - MIRb SINE MIR -114 154 7 4 1670 625 319 55 60 chr5 142282985 142283202 -10254057 + B4A SINE B4 2 217 -75 4 1670 291 85 0 0 chr5 142283274 142283321 -10253938 + (CAGA)n Simple_repeat Simple_repeat 4 50 0 5 1670 238 212 235 0 chr5 142283417 142283502 -10253757 + PB1D10 SINE Alu 5 109 -8 5 1670 234 172 52 0 chr5 142283503 142283561 -10253698 + (CAGA)n Simple_repeat Simple_repeat 4 64 0 5 1670 254 246 15 44 chr5 142284289 142284357 -10252902 - MamRep38 DNA hAT -226 69 4 5 1670 378 303 80 130 chr5 142284448 142284710 -10252549 - B4 SINE B4 -11 281 33 5 1670 443 189 8 0 chr5 142285397 142285519 -10251740 + (TG)n Simple_repeat Simple_repeat 1 123 0 5 1670 889 260 68 25 chr5 142285519 142285756 -10251503 - B4A SINE B4 0 292 46 5 1670 959 251 18 0 chr5 142286337 142286556 -10250703 + ID_B1 SINE B4 2 224 0 5 1670 3282 233 55 24 chr5 142286649 142287676 -10249583 + RMER1C Other Other 28 1340 -2 5 1670 1255 272 88 39 chr5 142287742 142288262 -10248997 + Charlie2b DNA MER1_type 1915 2460 -322 5 1670 660 220 56 56 chr5 142288309 142288506 -10248753 - B3A SINE B2 -1 197 1 5 1670 339 226 128 99 chr5 142288602 142288774 -10248485 + B2_Mm2 SINE B2 5 181 -14 5 1670 253 203 68 0 chr5 142289294 142289353 -10247906 + MER5A1 DNA MER1_type 98 160 -6 5 1670 232 152 0 0 chr5 142289358 142289391 -10247868 - MER5A1 DNA MER1_type -100 66 34 5 1670 328 320 39 27 chr5 142289427 142289592 -10247667 + MER5A DNA MER1_type 1 182 -7 5 1670 1286 155 22 18 chr5 142289639 142289862 -10247397 - URR1B DNA MER1_type 0 225 2 5 1670 591 264 32 13 chr5 142290116 142290273 -10246986 - RSINE1 SINE B4 -4 161 2 5 1670 520 258 198 10 chr5 142290279 142290471 -10246788 - B4 SINE B4 -64 228 1 5 1670 1787 257 66 33 chr5 142290855 142291370 -10245889 - RMER5 LTR ERV1 0 534 3 5 1670 189 107 0 0 chr5 142292476 142292504 -10244755 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1670 234 0 0 0 chr5 142292684 142292710 -10244549 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1670 914 304 169 15 chr5 142292739 142293200 -10244059 - MT2A LTR ERVL 0 533 2 5 1670 528 258 16 0 chr5 142293345 142293469 -10243790 - RSINE1 SINE B4 -38 127 2 5 1670 180 369 0 0 chr5 142294040 142294105 -10243154 + MIR3 SINE MIR 113 177 -31 5 1670 701 255 115 37 chr5 142295228 142295497 -10241762 + B4A SINE B4 1 290 -2 5 1670 528 192 128 0 chr5 142295513 142295638 -10241621 - ID_B1 SINE B4 0 224 84 5 1670 198 103 0 0 chr5 142296680 142296709 -10240550 + (GCATG)n Simple_repeat Simple_repeat 3 31 0 5 1670 635 289 26 13 chr5 142296874 142297028 -10240231 + RSINE1 SINE B4 2 157 -8 5 1670 228 67 0 0 chr5 142297034 142297064 -10240195 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1670 1061 196 35 102 chr5 142297098 142297354 -10239905 + MTEb LTR MaLR 141 379 0 5 1670 236 200 17 0 chr5 142298234 142298294 -10238965 + (TA)n Simple_repeat Simple_repeat 2 62 0 5 1670 186 43 0 0 chr5 142298294 142298317 -10238942 + (GA)n Simple_repeat Simple_repeat 2 24 0 5 1670 219 36 0 0 chr5 142298344 142298372 -10238887 + (TG)n Simple_repeat Simple_repeat 2 29 0 5 1670 865 270 15 10 chr5 142298395 142298601 -10238658 - B4 SINE B4 -83 209 3 5 1670 301 219 121 30 chr5 142298601 142298700 -10238559 - Charlie2b DNA MER1_type -113 2669 2562 5 1670 477 175 0 0 chr5 142298873 142298953 -10238306 - ORR1D1 LTR MaLR -279 95 16 5 1670 337 271 0 56 chr5 142299396 142299486 -10237773 - RSINE1 SINE B4 -74 91 7 5 1670 333 0 0 0 chr5 142299783 142299820 -10237439 + (TG)n Simple_repeat Simple_repeat 2 38 0 5 1670 920 243 84 30 chr5 142299827 142300090 -10237169 - B4A SINE B4 -15 277 1 5 1670 996 198 5 34 chr5 142300924 142301133 -10236126 + URR1B DNA MER1_type 1 203 -22 5 1670 377 323 10 0 chr5 142301296 142301395 -10235864 + PB1D10 SINE Alu 18 117 0 5 1670 306 283 32 24 chr5 142302593 142302716 -10234543 + L1MA5 LINE L1 5802 5925 -375 5 1670 293 210 83 36 chr5 142302732 142302750 -10234509 + B1F SINE Alu 27 114 -35 5 1670 388 212 0 0 chr5 142302750 142302816 -10234443 + ID_B1 SINE B4 127 192 -32 5 1670 911 249 8 44 chr5 142302816 142303064 -10234195 - MTEb LTR MaLR 0 379 141 5 1670 294 296 36 88 chr5 142303071 142303208 -10234051 - RMER10B LTR ERVL 0 398 269 5 1670 627 273 40 0 chr5 142303471 142303621 -10233638 - MTEb LTR MaLR -223 156 1 5 1670 233 375 0 0 chr5 142303663 142303735 -10233524 + RSINE1 SINE B4 3 74 -91 5 1670 267 200 20 0 chr5 142303799 142303849 -10233410 + B3A SINE B2 93 143 -55 5 1670 339 89 0 0 chr5 142303877 142303933 -10233326 + (CAGA)n Simple_repeat Simple_repeat 4 59 0 5 1670 225 0 0 0 chr5 142304128 142304153 -10233106 + (TG)n Simple_repeat Simple_repeat 1 25 0 5 1670 255 286 16 0 chr5 142304202 142304279 -10232980 - RSINE1 SINE B4 -212 80 2 5 1670 342 278 98 0 chr5 142304279 142304452 -10232807 + L1MA5 LINE L1 6111 6300 0 5 1670 732 251 58 23 chr5 142304630 142304801 -10232458 - B3A SINE B2 -17 181 5 5 1670 570 272 166 0 chr5 142304807 142304976 -10232283 - ID_B1 SINE B4 -8 216 20 5 1670 444 19 0 0 chr5 142305803 142305856 -10231403 + (TG)n Simple_repeat Simple_repeat 2 54 0 5 1670 1391 192 150 29 chr5 142305857 142306216 -10231043 - MTD LTR MaLR -13 406 1 5 1670 540 73 0 0 chr5 142306216 142306298 -10230961 + (TG)n Simple_repeat Simple_repeat 2 83 0 5 1670 408 297 102 72 chr5 142306371 142306538 -10230721 - B4A SINE B4 -116 176 5 5 1670 871 223 5 62 chr5 142306970 142307180 -10230079 + B3A SINE B2 1 198 0 5 1670 234 167 21 0 chr5 142307285 142307333 -10229926 + B4A SINE B4 98 146 -146 5 1670 262 252 105 61 chr5 142307296 142307410 -10229849 + B1F1 SINE Alu 25 143 -6 5 1670 3505 54 0 0 chr5 142307849 142308337 -10228922 - L1_Mus1 LINE L1 0 6567 6141 5 1670 576 254 98 6 chr5 142308338 142308512 -10228747 + ID_B1 SINE B4 33 222 -2 5 1670 204 120 60 0 chr5 142308512 142308562 -10228697 + A-rich Low_complexity Low_complexity 1 53 0 5 1670 213 39 0 0 chr5 142308566 142308592 -10228667 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 5 1670 244 203 69 44 chr5 142309129 142309242 -10228017 + B3 SINE B2 40 216 0 5 1670 1676 237 35 48 chr5 142309291 142309690 -10227569 - MTD LTR MaLR 0 419 26 5 1670 306 0 0 0 chr5 142309690 142309724 -10227535 + (CA)n Simple_repeat Simple_repeat 2 35 0 5 1670 378 306 0 8 chr5 142309913 142310016 -10227243 + ID4 SINE ID 1 99 -53 5 1670 352 172 0 0 chr5 142310087 142310145 -10227114 + ID SINE ID 1 58 -166 5 1670 519 243 52 88 chr5 142310099 142310293 -10226966 + ZP3AR Satellite Satellite 2 188 -24 5 1670 246 344 32 0 chr5 142310255 142310348 -10226911 + BC1_Mm scRNA scRNA 1 96 -56 5 1670 3754 14 128 0 chr5 142310365 142310802 -10226457 + MT2_Mm LTR ERVL 1 493 0 5 1670 443 294 153 17 chr5 142310917 142311211 -10226048 - L1_Mur3 LINE L1 -559 5321 4988 5 1670 2231 254 78 34 chr5 142311230 142311854 -10225405 + Lx8 LINE L1 6200 6851 -622 5 1670 297 0 0 0 chr5 142312812 142312845 -10224414 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1670 240 354 88 0 chr5 142312937 142313084 -10224175 + MER5B DNA MER1_type 17 176 -2 5 1670 322 325 26 17 chr5 142313189 142313305 -10223954 + MTEa LTR MaLR 263 379 0 5 1670 275 0 29 0 chr5 142313859 142313894 -10223365 + (TG)n Simple_repeat Simple_repeat 2 37 0 5 1670 974 257 71 22 chr5 142313930 142314197 -10223062 - B4A SINE B4 -12 280 1 5 1670 219 390 21 0 chr5 142315581 142315677 -10221582 - ID4 SINE ID -55 97 1 5 1670 634 184 30 46 chr5 142315638 142315769 -10221490 - ZP3AR Satellite Satellite -78 134 6 5 1670 534 138 28 0 chr5 142315974 142316083 -10221176 + CT-rich Low_complexity Low_complexity 1 112 0 5 1670 223 232 116 0 chr5 142316742 142316811 -10220448 - BC1_Mm scRNA scRNA -74 78 2 5 1670 460 191 142 9 chr5 142316838 142316944 -10220315 - B1F SINE Alu -8 141 22 5 1670 893 254 7 129 chr5 142317096 142317376 -10219883 + B4A SINE B4 4 249 -43 5 1670 197 159 0 22 chr5 142317678 142317723 -10219536 + T-rich Low_complexity Low_complexity 1 44 0 5 1670 607 266 94 10 chr5 142317987 142318188 -10219071 - ID_B1 SINE B4 -3 221 4 5 1670 185 0 40 0 chr5 142318597 142318622 -10218637 + (CTGGGG)n Simple_repeat Simple_repeat 5 30 0 5 1670 640 249 118 24 chr5 142318635 142318804 -10218455 + ID_B1 SINE B4 40 224 0 5 1670 183 80 0 0 chr5 142318804 142318829 -10218430 + (A)n Simple_repeat Simple_repeat 1 25 0 5 1670 483 100 0 0 chr5 142319322 142319392 -10217867 + (TCCC)n Simple_repeat Simple_repeat 1 70 0 5 1670 836 278 23 120 chr5 142319418 142319717 -10217542 - B4A SINE B4 -15 277 8 5 1670 429 276 218 21 chr5 142319749 142320038 -10217221 - L1MD3 LINE L1 -24 7971 7626 5 1670 851 287 21 21 chr5 142320185 142320473 -10216786 - B4A SINE B4 0 292 5 5 1670 225 132 0 0 chr5 142320566 142320604 -10216655 + (TCTG)n Simple_repeat Simple_repeat 3 40 0 5 1670 324 295 99 40 chr5 142320660 142320861 -10216398 - L1MD LINE L1 -1800 4346 4134 5 1670 638 288 37 44 chr5 142321225 142321519 -10215740 - B4A SINE B4 0 292 1 5 1670 198 0 0 0 chr5 142321551 142321573 -10215686 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 5 1670 496 225 72 0 chr5 142321596 142321707 -10215552 - RSINE1 SINE B4 -44 121 3 5 1670 938 287 64 22 chr5 142321974 142322232 -10215027 + B4A SINE B4 8 277 -15 5 1670 513 44 0 0 chr5 142322232 142322300 -10214959 + (CA)n Simple_repeat Simple_repeat 1 68 0 6 1670 631 271 83 5 chr5 142322762 142322955 -10214304 + ID_B1 SINE B4 1 208 -16 6 1670 676 244 71 13 chr5 142323126 142323280 -10213979 + B3 SINE B2 4 166 -50 6 1670 255 280 143 71 chr5 142323754 142323950 -10213309 - B4 SINE B4 -2 290 81 6 1670 225 0 0 0 chr5 142323950 142323975 -10213284 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1670 302 289 82 10 chr5 142324023 142324121 -10213138 + MLT2B2 LTR ERVL 3 107 -408 6 1670 264 263 64 92 chr5 142324121 142324132 -10213127 + ORR1E LTR MaLR 3 108 -271 6 1670 281 328 90 101 chr5 142324172 142324450 -10212809 + ORR1E LTR MaLR 66 340 -19 6 1670 628 271 87 16 chr5 142324582 142324766 -10212493 - B3A SINE B2 -1 197 1 6 1670 280 322 21 11 chr5 142324937 142325031 -10212228 - MIR3 SINE MIR -19 189 95 6 1670 447 19 0 0 chr5 142325290 142325342 -10211917 + (TC)n Simple_repeat Simple_repeat 2 53 0 6 1670 405 0 0 0 chr5 142325342 142325386 -10211873 + (TG)n Simple_repeat Simple_repeat 2 46 0 6 1670 453 283 9 9 chr5 142325387 142325494 -10211765 + Tigger5 DNA MER2_type 14 120 -2286 6 1670 810 219 17 44 chr5 142325499 142325697 -10211562 - MTE2a LTR MaLR -9 370 180 6 1670 1259 204 28 37 chr5 142325730 142325993 -10211266 - MTE2a LTR MaLR -124 255 3 6 1670 326 316 10 31 chr5 142325993 142326088 -10211171 + Tigger5 DNA MER2_type 134 226 -2180 6 1670 280 231 31 156 chr5 142326497 142326625 -10210634 + MT2A LTR ERVL 1 112 -421 6 1670 1621 223 31 65 chr5 142326531 142326915 -10210344 + MTD LTR MaLR 49 419 0 6 1670 305 231 30 15 chr5 142326993 142327059 -10210200 - B4A SINE B4 -5 287 221 6 1670 267 31 0 0 chr5 142327063 142327095 -10210164 + (TG)n Simple_repeat Simple_repeat 1 32 0 6 1670 909 298 23 53 chr5 142327107 142327408 -10209851 - B4A SINE B4 0 292 1 6 1670 234 269 0 0 chr5 142328452 142328519 -10208740 + T-rich Low_complexity Low_complexity 2 68 0 6 1670 555 246 182 18 chr5 142328879 142329049 -10208210 + ID_B1 SINE B4 25 222 -2 6 1670 372 111 0 0 chr5 142330340 142330403 -10206856 + (TG)n Simple_repeat Simple_repeat 2 64 0 6 1670 387 262 27 33 chr5 142330407 142330557 -10206702 + (TATATG)n Simple_repeat Simple_repeat 5 153 0 6 1670 188 35 35 0 chr5 142330858 142330887 -10206372 + (CCCCCA)n Simple_repeat Simple_repeat 1 30 0 6 1670 1433 104 5 0 chr5 142330994 142331255 -10206004 + ZP3AR Satellite Satellite 1 262 0 6 1670 300 70 0 0 chr5 142331983 142332026 -10205233 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1670 509 311 86 24 chr5 142332027 142332289 -10204970 - B4 SINE B4 -18 274 2 6 1670 839 171 102 12 chr5 142334122 142334288 -10202971 - B3A SINE B2 -16 182 2 6 1670 231 61 0 0 chr5 142334724 142334757 -10202502 + (A)n Simple_repeat Simple_repeat 1 33 0 6 1670 710 0 0 23 chr5 142335215 142335282 -10201977 + (TTC)n Simple_repeat Simple_repeat 1 66 0 6 1670 1219 79 11 0 chr5 142335282 142335459 -10201800 + (TCC)n Simple_repeat Simple_repeat 2 180 0 6 1670 710 0 0 23 chr5 142335459 142335478 -10201781 + (TTC)n Simple_repeat Simple_repeat 3 21 0 6 1670 203 220 34 0 chr5 142335708 142335767 -10201492 + (TTTAG)n Simple_repeat Simple_repeat 4 64 0 6 1670 1243 48 0 0 chr5 142335767 142335913 -10201346 - B1_Mus2 SINE Alu 0 147 2 6 1670 569 116 0 0 chr5 142335919 142336014 -10201245 - L1_Mus3 LINE L1 -2 6636 6542 6 1670 581 40 0 13 chr5 142336018 142336095 -10201164 + (TCTA)n Simple_repeat Simple_repeat 4 79 0 6 1670 687 234 111 5 chr5 142336169 142336358 -10200901 - B4A SINE B4 -82 210 2 6 1670 888 51 0 0 chr5 142337188 142337306 -10199953 + (TG)n Simple_repeat Simple_repeat 2 119 0 6 1670 771 269 51 140 chr5 142337406 142337721 -10199538 - B4 SINE B4 0 292 6 6 1670 298 286 182 48 chr5 142338168 142338355 -10198904 + MER33 DNA MER1_type 3 214 -110 6 1670 882 246 15 10 chr5 142338395 142338596 -10198663 + B4 SINE B4 13 214 -78 6 1670 342 45 0 0 chr5 142338596 142338640 -10198619 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 6 1670 267 31 0 0 chr5 142338650 142338682 -10198577 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1670 424 300 44 57 chr5 142339115 142339274 -10197985 + B4 SINE B4 41 197 -95 6 1670 337 379 73 41 chr5 142339413 142339826 -10197433 - MLT1J-int LTR MaLR -292 1095 670 6 1670 785 279 10 0 chr5 142339995 142340203 -10197056 + ID_B1 SINE B4 1 210 -14 6 1670 365 332 147 23 chr5 142340261 142340526 -10196733 - MLT1J-int LTR MaLR -1089 298 1 6 1670 1014 286 39 18 chr5 142340916 142341201 -10196058 - B4 SINE B4 -1 291 1 6 1670 1167 138 153 0 chr5 142342341 142342537 -10194722 - URR1A DNA MER1_type 0 226 1 6 1670 316 239 0 0 chr5 142343214 142343306 -10193953 + (CCTG)n Simple_repeat Simple_repeat 1 92 0 6 1670 369 255 20 20 chr5 142343315 142343415 -10193844 - B1F1 SINE Alu 0 149 50 6 1670 207 0 0 0 chr5 142343479 142343502 -10193757 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1670 361 306 63 48 chr5 142343502 142343691 -10193568 - B4A SINE B4 -12 280 89 6 1671 779 223 127 5 chr5 142344792 142344981 -10192278 + ID_B1 SINE B4 8 219 -5 6 1671 270 0 0 0 chr5 142345472 142345502 -10191757 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1671 292 274 0 99 chr5 142345511 142345592 -10191667 - B4A SINE B4 0 292 220 6 1671 21 57 0 0 chr5 142345595 142345630 -10191629 + AT_rich Low_complexity Low_complexity 1 35 0 6 1671 713 240 11 66 chr5 142345994 142346177 -10191082 - B3A SINE B2 -42 174 2 6 1671 713 270 32 45 chr5 142346187 142346408 -10190851 - B4A SINE B4 -71 221 4 6 1671 239 130 19 0 chr5 142346594 142346648 -10190611 + (CA)n Simple_repeat Simple_repeat 2 56 0 6 1671 765 234 37 31 chr5 142346858 142347021 -10190238 - RSINE1 SINE B4 0 165 2 6 1671 205 186 0 0 chr5 142347021 142347064 -10190195 + CT-rich Low_complexity Low_complexity 1 43 0 6 1671 198 150 0 0 chr5 142347066 142347106 -10190153 + (TCC)n Simple_repeat Simple_repeat 2 41 0 6 1671 916 297 41 21 chr5 142347106 142347571 -10189688 - L1MEc LINE L1 -3053 3266 2793 6 1671 297 198 52 88 chr5 142347577 142347771 -10189488 + RMER17A LTR ERVK 291 477 -274 6 1671 388 145 50 34 chr5 142347704 142347791 -10189468 - PB1D7 SINE Alu -2 147 48 6 1671 997 226 27 41 chr5 142347823 142348081 -10189178 + ID_B1 SINE B4 13 278 -14 6 1671 448 249 185 58 chr5 142348234 142348634 -10188625 - L1MEc LINE L1 -5920 480 30 6 1671 320 85 21 0 chr5 142348654 142348701 -10188558 + MTE2b LTR MaLR 319 366 -13 6 1671 1314 237 34 55 chr5 142348724 142349050 -10188209 - MTE2b LTR MaLR -58 321 3 6 1671 606 248 45 13 chr5 142349318 142349473 -10187786 - B3A SINE B2 -38 160 1 6 1671 547 240 94 54 chr5 142349802 142350005 -10187254 - B3 SINE B2 -3 213 3 6 1671 347 286 40 10 chr5 142350118 142350217 -10187042 - MTEb LTR MaLR -1 378 277 6 1671 411 200 0 12 chr5 142350278 142350359 -10186900 - MTEa LTR MaLR -6 373 294 6 1671 464 258 15 46 chr5 142350352 142350482 -10186777 - RSINE1 SINE B4 -38 127 2 6 1671 653 289 40 8 chr5 142350482 142350675 -10186584 - B3A SINE B2 -1 215 22 6 1671 835 225 126 15 chr5 142351520 142351782 -10185477 - B4 SINE B4 0 292 2 6 1671 225 269 0 0 chr5 142352277 142352355 -10184904 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1671 234 251 5 48 chr5 142352470 142352658 -10184601 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 6 1671 344 353 0 0 chr5 142352659 142352778 -10184481 + (CA)n Simple_repeat Simple_repeat 2 120 0 6 1671 683 254 28 28 chr5 142352780 142352962 -10184297 - B3A SINE B2 -16 182 1 6 1671 309 217 0 0 chr5 142352997 142353057 -10184202 - MTEa LTR MaLR -319 60 1 6 1671 369 322 162 4 chr5 142353059 142353287 -10183972 - L1MC4 LINE L1 -396 7646 7383 6 1671 215 328 0 0 chr5 142353434 142353501 -10183758 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1671 885 217 20 15 chr5 142353504 142353705 -10183554 - B4A SINE B4 -6 286 85 6 1671 340 298 54 95 chr5 142353806 142354047 -10183212 - L1MC4 LINE L1 -857 7185 6955 6 1671 376 293 60 116 chr5 142354082 142354314 -10182945 - B4 SINE B4 0 292 74 6 1671 239 341 111 44 chr5 142354895 142355030 -10182229 + L2 LINE L2 14 157 -3262 6 1671 192 200 0 0 chr5 142355032 142355077 -10182182 + CT-rich Low_complexity Low_complexity 3 47 0 6 1671 265 286 26 0 chr5 142355124 142355201 -10182058 + L1MB8 LINE L1 5205 5283 -863 6 1671 394 305 68 74 chr5 142355201 142355364 -10181895 + B4 SINE B4 1 162 -130 6 1671 636 224 239 11 chr5 142355499 142355675 -10181584 - B3 SINE B2 0 216 1 6 1671 271 258 31 15 chr5 142355693 142355823 -10181436 + L1MB8 LINE L1 5269 5400 -774 6 1671 1224 251 165 11 chr5 142355827 142356190 -10181069 + MTD LTR MaLR 1 419 0 6 1671 1264 289 62 6 chr5 142356195 142356676 -10180583 + L1MB8 LINE L1 5382 5889 -289 6 1671 275 293 12 0 chr5 142356853 142356935 -10180324 + RSINE1 SINE B4 83 165 0 6 1671 249 293 195 12 chr5 142356999 142357168 -10180091 + L1MB5 LINE L1 5877 6076 -98 6 1671 22 56 0 0 chr5 142357267 142357303 -10179956 + AT_rich Low_complexity Low_complexity 1 36 0 6 1671 22 56 0 0 chr5 142357380 142357416 -10179843 + AT_rich Low_complexity Low_complexity 1 36 0 6 1671 845 278 24 51 chr5 142357547 142357843 -10179416 + B4A SINE B4 1 288 -4 6 1671 235 302 0 68 chr5 142357917 142358020 -10179239 - L1MEd LINE L1 -4728 1905 1810 6 1671 1088 288 7 3 chr5 142358326 142358615 -10178644 - B4 SINE B4 -2 290 1 6 1671 429 305 90 80 chr5 142358616 142359015 -10178244 - L1MEd LINE L1 -5006 1521 1119 6 1671 237 344 11 0 chr5 142359063 142359156 -10178103 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 6 1671 958 232 197 16 chr5 142359477 142359527 -10177732 - MTEb LTR MaLR -1 378 328 6 1671 786 117 0 0 chr5 142359527 142359647 -10177612 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 6 1671 958 232 197 16 chr5 142359647 142359916 -10177343 - MTEb LTR MaLR -52 327 2 6 1671 495 90 0 0 chr5 142359976 142360054 -10177205 + (TG)n Simple_repeat Simple_repeat 1 78 0 6 1671 342 0 0 0 chr5 142360054 142360091 -10177168 + (GA)n Simple_repeat Simple_repeat 1 38 0 6 1671 225 286 194 26 chr5 142360132 142360222 -10177037 + PB1D7 SINE Alu 12 114 -6 6 1671 301 336 139 0 chr5 142361119 142361256 -10176003 + HAL1-3A_ME LINE L1 2284 2439 -419 7 1671 351 0 0 0 chr5 142361256 142361295 -10175964 + (GAA)n Simple_repeat Simple_repeat 1 39 0 7 1671 913 278 36 66 chr5 142362739 142363040 -10174219 - B4 SINE B4 0 292 1 7 1671 588 65 0 0 chr5 142363192 142363269 -10173990 + (TCC)n Simple_repeat Simple_repeat 3 79 0 7 1671 228 67 0 0 chr5 142363802 142363832 -10173427 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1671 267 31 0 0 chr5 142363832 142363863 -10173396 + (GA)n Simple_repeat Simple_repeat 1 32 0 7 1671 430 179 38 23 chr5 142363919 142364181 -10173078 + (TG)n Simple_repeat Simple_repeat 1 266 0 7 1671 602 284 59 6 chr5 142364347 142364517 -10172742 + B3A SINE B2 19 197 -1 7 1671 309 354 84 63 chr5 142364545 142364603 -10172656 + B4 SINE B4 10 132 -160 7 1671 325 163 30 148 chr5 142364603 142364704 -10172555 + MT2B LTR ERVL 151 239 -362 7 1671 527 270 36 14 chr5 142364626 142364765 -10172494 + B1_Mur1 SINE Alu 7 148 -1 7 1671 309 354 84 63 chr5 142364704 142364735 -10172524 + B4 SINE B4 133 203 -89 7 1671 313 302 99 13 chr5 142364776 142364927 -10172332 + B4A SINE B4 84 247 -45 7 1671 367 310 218 8 chr5 142364920 142365154 -10172105 + B4A SINE B4 8 290 -2 7 1671 244 307 43 54 chr5 142365144 142365330 -10171929 - RLTR21 LTR ERVK -318 1254 1071 7 1671 1376 227 156 12 chr5 142366194 142366520 -10170739 + MTE2b LTR MaLR 1 373 -6 7 1671 528 77 33 0 chr5 142367208 142367299 -10169960 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 7 1671 342 67 0 0 chr5 142367304 142367349 -10169910 + (CATA)n Simple_repeat Simple_repeat 2 46 0 7 1671 287 261 108 31 chr5 142367365 142367559 -10169700 - RLTR21 LTR ERVK -286 1286 1078 7 1671 285 165 23 34 chr5 142367577 142367665 -10169594 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 7 1671 223 100 80 0 chr5 142367659 142367709 -10169550 + (CATATA)n Simple_repeat Simple_repeat 5 58 0 7 1671 186 43 0 0 chr5 142367717 142367740 -10169519 + (TGGA)n Simple_repeat Simple_repeat 3 25 0 7 1671 685 304 77 0 chr5 142368586 142368767 -10168492 + B4A SINE B4 1 195 -97 7 1671 1244 158 167 19 chr5 142368774 142369032 -10168227 - ORR1D1 LTR MaLR 0 374 79 7 1671 5398 53 43 14 chr5 142369047 142369737 -10167522 - L1Md_F2 LINE L1 -21 6561 5852 7 1671 496 210 0 0 chr5 142369737 142369818 -10167441 - ORR1D1 LTR MaLR -293 81 1 7 1671 376 282 0 0 chr5 142369818 142369902 -10167357 + B4A SINE B4 203 286 -6 7 1671 477 0 0 0 chr5 142369936 142369989 -10167270 + (TC)n Simple_repeat Simple_repeat 1 53 0 7 1671 270 0 0 0 chr5 142369990 142370020 -10167239 + (CA)n Simple_repeat Simple_repeat 1 30 0 7 1671 672 232 14 21 chr5 142370404 142370545 -10166714 - ID_B1 SINE B4 -1 223 84 7 1671 1083 255 35 11 chr5 142371104 142371389 -10165870 + B4A SINE B4 1 292 0 7 1671 1588 245 66 0 chr5 142371599 142371946 -10165313 - MTEa LTR MaLR -9 370 1 7 1671 587 250 45 37 chr5 142372206 142372405 -10164854 - B4 SINE B4 -90 202 1 7 1671 1032 233 74 15 chr5 142372940 142373210 -10164049 - B4 SINE B4 -6 286 1 7 1671 295 279 38 102 chr5 142373455 142373628 -10163631 - MLT1A1 LTR MaLR 0 408 199 7 1671 219 188 0 0 chr5 142373946 142373994 -10163265 + (TA)n Simple_repeat Simple_repeat 2 49 0 7 1671 21 0 0 0 chr5 142374027 142374048 -10163211 + AT_rich Low_complexity Low_complexity 1 21 0 7 1671 259 275 31 13 chr5 142374240 142374334 -10162925 + PB1D10 SINE Alu 1 98 -22 7 1671 190 229 14 14 chr5 142374334 142374405 -10162854 + G-rich Low_complexity Low_complexity 1 71 0 7 1671 810 262 70 31 chr5 142374848 142375104 -10162155 - B4A SINE B4 -26 266 1 7 1671 205 210 48 0 chr5 142375225 142375287 -10161972 + (TCTG)n Simple_repeat Simple_repeat 1 65 0 7 1671 496 209 8 73 chr5 142375310 142375434 -10161825 - PB1D10 SINE Alu 0 117 2 7 1671 1604 210 26 106 chr5 142375450 142375838 -10161421 + MTE2b LTR MaLR 10 366 -13 7 1671 180 0 0 0 chr5 142376398 142376418 -10160841 + (TA)n Simple_repeat Simple_repeat 2 21 0 7 1671 849 155 0 0 chr5 142376418 142376566 -10160693 + (TG)n Simple_repeat Simple_repeat 2 149 0 7 1671 825 189 0 0 chr5 142376585 142376749 -10160510 + (TG)n Simple_repeat Simple_repeat 1 164 0 7 1671 319 315 11 11 chr5 142376749 142376839 -10160420 - PB1D10 SINE Alu -27 90 1 7 1671 307 327 135 91 chr5 142376944 142377231 -10160028 - MT2A LTR ERVL -128 426 2 7 1671 246 327 25 58 chr5 142377231 142377351 -10159908 - MTEa LTR MaLR -262 117 2 7 1671 222 243 0 0 chr5 142377921 142378024 -10159235 + (TG)n Simple_repeat Simple_repeat 2 104 0 7 1671 438 20 0 0 chr5 142378062 142378113 -10159146 + (TG)n Simple_repeat Simple_repeat 1 51 0 7 1671 325 304 128 0 chr5 142378210 142378335 -10158924 - B4A SINE B4 -145 147 7 7 1671 392 317 18 41 chr5 142379635 142379806 -10157453 + B4 SINE B4 126 292 0 7 1671 463 266 0 17 chr5 142379811 142379926 -10157333 + PB1D9 SINE Alu 3 115 -5 7 1671 242 216 14 0 chr5 142380265 142380339 -10156920 + (TG)n Simple_repeat Simple_repeat 1 75 0 7 1671 284 293 0 12 chr5 142380341 142380424 -10156835 + (TATG)n Simple_repeat Simple_repeat 3 84 0 7 1671 507 252 58 8 chr5 142380722 142380842 -10156417 + B1F SINE Alu 1 126 -23 7 1671 362 306 0 0 chr5 142380809 142380894 -10156365 + B1_Mur1 SINE Alu 65 149 0 7 1671 432 0 0 0 chr5 142380955 142381003 -10156256 + (TC)n Simple_repeat Simple_repeat 2 49 0 7 1671 369 0 0 0 chr5 142381003 142381043 -10156216 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1671 264 226 0 0 chr5 142381182 142381244 -10156015 + (TA)n Simple_repeat Simple_repeat 1 62 0 7 1671 378 327 29 82 chr5 142381254 142381424 -10155835 - B4A SINE B4 -118 174 14 7 1671 652 262 57 64 chr5 142382086 142382367 -10154892 + B4 SINE B4 3 281 -11 7 1671 311 109 22 0 chr5 142382573 142382619 -10154640 - HAL1-3A_ME LINE L1 -846 2012 1966 7 1671 1191 224 22 40 chr5 142382619 142382893 -10154366 - B4 SINE B4 0 292 24 7 1671 612 296 93 9 chr5 142384226 142384451 -10152808 + B4A SINE B4 2 245 -47 7 1671 360 0 0 0 chr5 142384484 142384524 -10152735 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 7 1671 1465 222 106 10 chr5 142384565 142384970 -10152289 + RMER5 LTR ERV1 60 503 -31 7 1671 229 258 130 43 chr5 142385125 142385194 -10152065 + B4 SINE B4 195 269 -23 7 1671 315 0 0 0 chr5 142385194 142385229 -10152030 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1671 369 0 0 0 chr5 142385229 142385269 -10151990 + (GA)n Simple_repeat Simple_repeat 2 42 0 7 1671 1030 221 94 11 chr5 142385926 142386191 -10151068 + B4A SINE B4 2 288 -4 7 1671 235 161 18 18 chr5 142386222 142386279 -10150980 + GA-rich Low_complexity Low_complexity 1 57 0 7 1671 366 309 54 9 chr5 142387370 142387481 -10149778 + B1F SINE Alu 1 116 -33 7 1671 326 366 23 39 chr5 142387481 142387498 -10149761 + ID_B1 SINE B4 82 207 -17 7 1671 1203 61 0 13 chr5 142387537 142387686 -10149573 + B1_Mm SINE Alu 1 147 0 7 1671 288 172 0 0 chr5 142387686 142387744 -10149515 + A-rich Low_complexity Low_complexity 1 58 0 7 1671 769 260 19 107 chr5 142387747 142388057 -10149202 + B4A SINE B4 4 286 -6 7 1671 203 182 23 0 chr5 142388067 142388111 -10149148 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1671 192 40 0 0 chr5 142388111 142388136 -10149123 + (GA)n Simple_repeat Simple_repeat 2 26 0 7 1671 435 38 0 0 chr5 142388221 142388274 -10148985 + (TG)n Simple_repeat Simple_repeat 2 54 0 7 1671 721 243 138 50 chr5 142389718 142389932 -10147327 + L1MB3 LINE L1 4967 5200 -946 7 1671 398 329 71 24 chr5 142389932 142390144 -10147115 + ID_B1 SINE B4 2 223 -1 7 1671 721 243 138 50 chr5 142390144 142390191 -10147068 + L1MB3 LINE L1 5201 5262 -884 7 1671 375 23 0 0 chr5 142390191 142390235 -10147024 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 7 1671 761 276 107 63 chr5 142390235 142390487 -10146772 + L1MB3 LINE L1 5275 5504 -676 7 1671 288 0 0 0 chr5 142390487 142390519 -10146740 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 7 1671 761 276 107 63 chr5 142390519 142390754 -10146505 + L1MB3 LINE L1 5505 5783 -397 7 1671 489 299 255 56 chr5 142390759 142391045 -10146214 + MTEa LTR MaLR 1 343 -36 7 1671 485 244 293 3 chr5 142391059 142391289 -10145970 + L1MB3 LINE L1 5785 6079 -104 7 1671 1278 75 103 0 chr5 142391629 142391803 -10145456 - B2_Mm2 SINE B2 -3 192 1 7 1671 820 219 96 0 chr5 142391909 142392096 -10145163 - ID_B1 SINE B4 -18 206 2 7 1671 731 290 22 107 chr5 142393303 142393620 -10143639 + B4 SINE B4 1 290 -2 7 1671 416 239 0 66 chr5 142394251 142394372 -10142887 + ID_B1 SINE B4 112 224 0 7 1671 407 285 85 90 chr5 142394385 142394574 -10142685 + B4A SINE B4 1 188 -104 7 1671 730 184 6 6 chr5 142394597 142394772 -10142487 + (CATA)n Simple_repeat Simple_repeat 4 178 0 7 1671 361 231 11 39 chr5 142394791 142394971 -10142288 + (CATA)n Simple_repeat Simple_repeat 4 178 0 7 1671 273 297 0 0 chr5 142394973 142395047 -10142212 + (CA)n Simple_repeat Simple_repeat 1 74 0 7 1671 195 42 0 0 chr5 142395097 142395121 -10142138 + (TCTG)n Simple_repeat Simple_repeat 3 26 0 7 1671 697 267 60 73 chr5 142395122 142395340 -10141919 - B4 SINE B4 -77 215 1 7 1671 498 271 76 38 chr5 142395734 142395891 -10141368 - RSINE1 SINE B4 0 165 3 7 1671 378 0 0 0 chr5 142396070 142396112 -10141147 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1671 333 102 0 0 chr5 142396112 142396171 -10141088 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 7 1671 654 207 0 0 chr5 142396174 142396343 -10140916 + GA-rich Low_complexity Low_complexity 4 172 0 7 1671 1067 239 88 4 chr5 142396359 142396619 -10140640 - B4 SINE B4 -2 290 9 7 1671 713 263 13 109 chr5 142397508 142397738 -10139521 - B4A SINE B4 -13 279 72 7 1671 1121 246 42 11 chr5 142397757 142398040 -10139219 - B4 SINE B4 0 292 1 7 1671 1616 147 194 10 chr5 142398312 142398622 -10138637 - ORR1B2 LTR MaLR 0 367 1 7 1671 922 256 36 14 chr5 142398770 142398853 -10138406 + B4 SINE B4 2 83 -209 7 1671 411 21 0 0 chr5 142398853 142398901 -10138358 + (TG)n Simple_repeat Simple_repeat 2 49 0 7 1671 922 256 36 14 chr5 142398901 142399037 -10138222 + B4 SINE B4 84 226 -66 7 1671 725 237 51 0 chr5 142399037 142399193 -10138066 + RSINE1 SINE B4 2 165 0 8 1671 290 156 16 0 chr5 142399284 142399348 -10137911 + (CA)n Simple_repeat Simple_repeat 2 66 0 8 1671 188 241 247 24 chr5 142399423 142399508 -10137751 + MIR SINE MIR 111 214 -48 8 1671 39737 9 0 7 chr5 142399688 142405905 -10131354 - L1Md_A LINE L1 0 6582 416 8 1671 492 18 0 0 chr5 142405939 142405996 -10131263 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1671 748 248 18 24 chr5 142406015 142406180 -10131079 - RSINE1 SINE B4 0 165 2 8 1671 1135 142 17 0 chr5 142406199 142406375 -10130884 - URR1A DNA MER1_type 0 226 48 8 1671 309 350 9 28 chr5 142406479 142406585 -10130674 + PB1 SINE Alu 22 125 -2 8 1671 252 135 0 0 chr5 142406595 142406632 -10130627 + ID4 SINE ID 2 38 -45 8 1671 314 268 12 24 chr5 142406647 142406731 -10130528 + ID4 SINE ID 1 83 0 8 1671 200 176 0 0 chr5 142407306 142407340 -10129919 + (TG)n Simple_repeat Simple_repeat 2 35 0 8 1671 656 261 8 0 chr5 142407727 142407861 -10129398 + ID_B1 SINE B4 2 136 -88 8 1671 1223 248 110 31 chr5 142407868 142408251 -10129008 - MTD LTR MaLR 0 419 7 8 1671 226 219 0 0 chr5 142408235 142408276 -10128983 + ID_B1 SINE B4 174 214 -10 8 1671 186 43 0 0 chr5 142408276 142408299 -10128960 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1671 932 287 44 7 chr5 142409789 142410063 -10127196 - B4A SINE B4 -8 284 1 8 1671 263 150 78 62 chr5 142410094 142410158 -10127101 - PB1D10 SINE Alu -20 97 33 8 1671 378 42 0 0 chr5 142410163 142410211 -10127048 + (TG)n Simple_repeat Simple_repeat 1 48 0 8 1671 876 239 66 129 chr5 142410235 142410393 -10126866 - B4 SINE B4 -2 290 132 8 1671 1229 41 7 0 chr5 142410393 142410539 -10126720 - B1_Mm SINE Alu 0 147 1 8 1671 876 239 66 129 chr5 142410539 142410683 -10126576 - B4 SINE B4 -161 131 7 8 1671 1338 220 105 6 chr5 142411296 142411639 -10125620 - MTEb LTR MaLR -2 377 1 8 1671 1083 231 23 56 chr5 142412478 142412780 -10124479 + B4A SINE B4 1 292 0 8 1671 788 268 60 37 chr5 142413813 142414081 -10123178 - B4A SINE B4 -18 274 1 8 1671 257 0 30 0 chr5 142414106 142414139 -10123120 + (ATTG)n Simple_repeat Simple_repeat 1 34 0 8 1671 681 187 48 61 chr5 142414139 142414304 -10122955 - RSINE1 SINE B4 0 165 3 8 1671 326 358 36 9 chr5 142414430 142414540 -10122719 - MTEb LTR MaLR -11 368 256 8 1671 247 246 83 42 chr5 142416000 142416072 -10121187 - B4A SINE B4 0 292 218 8 1671 369 0 0 0 chr5 142416086 142416127 -10121132 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1671 730 254 0 0 chr5 142416135 142416277 -10120982 - B3A SINE B2 -49 149 8 8 1671 751 230 108 65 chr5 142416275 142416489 -10120770 - B4A SINE B4 -66 226 4 8 1671 841 248 36 129 chr5 142417942 142418220 -10119039 + MTE2a LTR MaLR 1 252 -127 8 1671 592 170 0 0 chr5 142418219 142418319 -10118940 - MTEb LTR MaLR -124 255 156 8 1671 672 225 7 35 chr5 142418300 142418443 -10118816 + MTE2a LTR MaLR 241 379 0 8 1671 1549 224 34 44 chr5 142418627 142419010 -10118249 - MTEb LTR MaLR 0 379 1 8 1671 244 224 8 53 chr5 142419153 142419285 -10117974 + CT-rich Low_complexity Low_complexity 1 126 0 8 1671 483 282 81 28 chr5 142419314 142419562 -10117697 - MLT1E2 LTR MaLR -366 261 1 8 1671 396 0 0 0 chr5 142420041 142420085 -10117174 + (TC)n Simple_repeat Simple_repeat 2 45 0 8 1671 1723 201 21 42 chr5 142420712 142421092 -10116167 - ORR1D1 LTR MaLR -2 372 1 8 1671 310 288 45 0 chr5 142421154 142421265 -10115994 + L1MD1 LINE L1 5847 5962 -397 8 1671 416 301 75 27 chr5 142421551 142421698 -10115561 - RMER15 LTR ERVL -76 499 346 8 1671 326 267 22 0 chr5 142421991 142422081 -10115178 + L1MD1 LINE L1 6143 6234 -8 8 1671 1136 257 68 22 chr5 142423429 142423707 -10113552 + B4A SINE B4 2 292 0 8 1671 582 165 0 0 chr5 142423708 142423835 -10113424 + (CA)n Simple_repeat Simple_repeat 2 128 0 8 1671 351 369 82 5 chr5 142423844 142424051 -10113208 + HAL1-3A_ME LINE L1 1976 2198 -660 8 1671 1014 282 64 24 chr5 142424121 142424419 -10112840 - ORR1E LTR MaLR -49 310 1 8 1671 802 251 47 37 chr5 142424968 142425183 -10112076 - ID_B1 SINE B4 -7 217 1 8 1671 387 0 0 0 chr5 142425366 142425409 -10111850 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1671 396 200 157 20 chr5 142427218 142427320 -10109939 + PB1D10 SINE Alu 2 117 0 8 1671 491 224 41 39 chr5 142428252 142428504 -10108755 - MTEb LTR MaLR 0 379 154 8 1671 765 0 0 0 chr5 142428504 142428589 -10108670 + (CCCCAG)n Simple_repeat Simple_repeat 1 85 0 8 1671 222 37 0 0 chr5 142429330 142429357 -10107902 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1671 228 182 0 0 chr5 142429773 142429817 -10107442 + (CGTG)n Simple_repeat Simple_repeat 4 47 0 8 1671 297 51 0 0 chr5 142430103 142430142 -10107117 + (TG)n Simple_repeat Simple_repeat 2 40 0 8 1671 547 286 39 60 chr5 142431095 142431277 -10105982 + B4A SINE B4 49 226 -66 8 1671 255 125 0 0 chr5 142431277 142431317 -10105942 + (A)n Simple_repeat Simple_repeat 1 40 0 8 1671 1165 213 14 5 chr5 142431416 142431638 -10105621 + URR1B DNA MER1_type 2 225 0 8 1671 569 292 108 47 chr5 142432567 142432779 -10104480 + B4A SINE B4 5 229 -63 8 1671 200 333 0 0 chr5 142432783 142432843 -10104416 + (CA)n Simple_repeat Simple_repeat 1 60 0 8 1671 294 297 0 0 chr5 142433209 142433354 -10103905 + (CA)n Simple_repeat Simple_repeat 2 146 0 8 1671 724 282 77 0 chr5 142433491 142433647 -10103612 - B3A SINE B2 -30 168 1 8 1671 412 165 46 208 chr5 142434448 142434578 -10102681 - B1F SINE Alu 0 149 41 8 1671 930 284 5 5 chr5 142434610 142434833 -10102426 + B4 SINE B4 3 225 -67 8 1671 520 262 180 11 chr5 142435834 142436023 -10101236 + ID_B1 SINE B4 2 222 -2 8 1671 690 209 42 21 chr5 142436035 142436177 -10101082 + B1_Mur2 SINE Alu 5 149 0 8 1671 649 97 0 34 chr5 142436311 142436429 -10100830 + (GGGAGA)n Simple_repeat Simple_repeat 5 118 0 8 1671 378 0 0 0 chr5 142437567 142437609 -10099650 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1671 722 278 82 45 chr5 142437683 142437950 -10099309 - B4A SINE B4 -14 278 2 8 1671 817 295 41 5 chr5 142437950 142438171 -10099088 - B4 SINE B4 -63 229 1 8 1671 791 229 19 72 chr5 142438264 142438471 -10098788 - B3A SINE B2 0 198 3 8 1671 426 20 0 0 chr5 142438944 142438995 -10098264 + (TG)n Simple_repeat Simple_repeat 2 52 0 8 1671 1046 284 7 11 chr5 142439036 142439310 -10097949 - B4 SINE B4 -17 275 3 8 1671 459 35 0 0 chr5 142439312 142439369 -10097890 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 8 1671 891 216 21 0 chr5 142440276 142440466 -10096793 + B3A SINE B2 4 197 -1 8 1671 935 281 26 4 chr5 142440481 142440749 -10096510 + B4A SINE B4 1 274 -18 8 1671 769 100 49 20 chr5 142440815 142441162 -10096097 + (CA)n Simple_repeat Simple_repeat 1 356 0 8 1671 277 96 74 11 chr5 142441188 142441283 -10095976 + (CA)n Simple_repeat Simple_repeat 1 101 0 8 1671 315 0 0 0 chr5 142442092 142442127 -10095132 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 8 1671 827 311 0 62 chr5 142442569 142442813 -10094446 + B4A SINE B4 1 228 -64 8 1671 499 329 24 37 chr5 142442813 142442977 -10094282 + RSINE1 SINE B4 1 162 -3 8 1671 482 86 12 0 chr5 142442977 142443058 -10094201 + (CA)n Simple_repeat Simple_repeat 1 82 0 8 1671 376 292 43 27 chr5 142443332 142443571 -10093688 + B4 SINE B4 2 292 0 8 1671 264 185 0 0 chr5 142443582 142443636 -10093623 + (CA)n Simple_repeat Simple_repeat 2 55 0 8 1671 195 267 325 0 chr5 142444069 142444190 -10093069 + L2a LINE L2 3198 3357 -18 8 1671 568 316 85 60 chr5 142444356 142444639 -10092620 + B4A SINE B4 3 292 0 8 1671 277 116 0 0 chr5 142444712 142444755 -10092504 + ID_B1 SINE B4 182 224 0 8 1671 379 177 97 97 chr5 142445523 142445667 -10091592 + RMER10B LTR ERVL 12 155 -243 8 1671 611 239 58 58 chr5 142445668 142446108 -10091151 - RMER17C LTR ERVK -32 378 1 8 1671 353 276 71 25 chr5 142446187 142446384 -10090875 + RMER10B LTR ERVL 218 423 -19 8 1671 1079 254 73 4 chr5 142446587 142446832 -10090427 + B4A SINE B4 4 265 -27 8 1671 345 125 0 0 chr5 142446837 142446893 -10090366 + (CA)n Simple_repeat Simple_repeat 2 57 0 8 1671 450 0 0 0 chr5 142446989 142447039 -10090220 + (TG)n Simple_repeat Simple_repeat 1 50 0 8 1671 250 352 47 75 chr5 142447611 142447823 -10089436 - MER21B LTR ERV1 -610 253 48 8 1671 344 182 82 94 chr5 142447916 142448001 -10089258 + MTE2a LTR MaLR 18 101 -278 8 1671 405 0 0 0 chr5 142448301 142448346 -10088913 + (TG)n Simple_repeat Simple_repeat 2 46 0 8 1671 481 232 11 0 chr5 142448578 142448673 -10088586 + B4A SINE B4 1 96 -196 8 1671 270 0 0 0 chr5 142448777 142448807 -10088452 + (GTTTG)n Simple_repeat Simple_repeat 5 34 0 8 1671 230 0 0 32 chr5 142448828 142448859 -10088400 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 8 1671 785 199 14 0 chr5 142448861 142449007 -10088252 - B1_Mur4 SINE Alu -1 149 2 8 1671 690 278 56 0 chr5 142449102 142449300 -10087959 + B4A SINE B4 80 288 -4 8 1671 245 250 0 0 chr5 142449304 142449352 -10087907 + (CA)n Simple_repeat Simple_repeat 1 48 0 8 1671 210 341 12 24 chr5 142449384 142449468 -10087791 + B1F2 SINE Alu 23 105 -44 8 1671 402 161 32 0 chr5 142449471 142449564 -10087695 + (TGGA)n Simple_repeat Simple_repeat 3 98 0 8 1671 180 111 0 0 chr5 142449619 142449646 -10087613 + (TGGA)n Simple_repeat Simple_repeat 2 28 0 8 1671 185 97 63 16 chr5 142449943 142450006 -10087253 + T-rich Low_complexity Low_complexity 1 66 0 8 1671 680 287 23 11 chr5 142450376 142450459 -10086800 + B4A SINE B4 3 87 -205 8 1671 210 321 34 94 chr5 142450459 142450576 -10086683 + PB1D10 SINE Alu 1 110 -7 8 1671 1378 246 38 98 chr5 142450592 142450992 -10086267 - MTE2a LTR MaLR -1 378 3 8 1671 1179 117 0 0 chr5 142451025 142451205 -10086054 + (CA)n Simple_repeat Simple_repeat 1 180 0 8 1671 237 65 0 0 chr5 142451207 142451238 -10086021 + (CACG)n Simple_repeat Simple_repeat 1 31 0 9 1671 759 231 192 39 chr5 142451777 142452011 -10085248 - B4A SINE B4 -22 270 1 9 1671 414 57 0 0 chr5 142452731 142452784 -10084475 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1671 182 84 68 40 chr5 142452958 142453032 -10084227 + CT-rich Low_complexity Low_complexity 1 76 0 9 1671 564 265 179 0 chr5 142454557 142454719 -10082540 - ZP3AR Satellite Satellite -19 193 3 9 1671 986 238 338 23 chr5 142455207 142455642 -10081617 - RMER15 LTR ERVL -3 572 1 9 1671 794 319 99 4 chr5 142455911 142456163 -10081096 + B4 SINE B4 15 290 -2 9 1671 241 175 15 31 chr5 142456218 142456283 -10080976 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 9 1671 180 111 0 0 chr5 142456284 142456311 -10080948 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1671 247 288 14 0 chr5 142456349 142456422 -10080837 - ID4_ SINE ID -9 74 1 9 1671 316 347 66 31 chr5 142456751 142456947 -10080312 + L4 LINE RTE 679 881 -1148 9 1671 533 294 65 54 chr5 142457601 142457878 -10079381 + LTR37A LTR ERV1 84 363 -63 9 1671 395 214 11 43 chr5 142457894 142457987 -10079272 + B4A SINE B4 189 278 -14 9 1671 216 111 0 0 chr5 142457989 142458025 -10079234 + (CA)n Simple_repeat Simple_repeat 1 36 0 9 1671 474 186 0 21 chr5 142458048 142458191 -10079068 + (CA)n Simple_repeat Simple_repeat 1 140 0 9 1671 402 203 0 21 chr5 142458216 142458357 -10078902 + (CA)n Simple_repeat Simple_repeat 1 138 0 9 1671 512 194 0 8 chr5 142458442 142458572 -10078687 + (CA)n Simple_repeat Simple_repeat 2 130 0 9 1671 183 129 0 0 chr5 142458646 142458677 -10078582 + (CA)n Simple_repeat Simple_repeat 1 31 0 9 1671 21 36 0 0 chr5 142459031 142459059 -10078200 + AT_rich Low_complexity Low_complexity 1 28 0 9 1671 459 267 8 41 chr5 142459195 142459316 -10077943 + PB1D10 SINE Alu 1 117 0 9 1671 1191 274 32 14 chr5 142459726 142460004 -10077255 - B4 SINE B4 -3 289 7 9 1671 360 0 0 0 chr5 142461247 142461287 -10075972 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 9 1671 323 356 19 32 chr5 142461386 142461540 -10075719 - L1M LINE L1 -701 5423 5272 9 1671 797 256 50 15 chr5 142461619 142461817 -10075442 - ID_B1 SINE B4 -16 208 4 9 1671 188 0 74 0 chr5 142462133 142462160 -10075099 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 9 1671 782 194 0 53 chr5 142462169 142462321 -10074938 + B1_Mur2 SINE Alu 6 149 0 9 1671 327 113 0 0 chr5 142462527 142462589 -10074670 + (A)n Simple_repeat Simple_repeat 1 62 0 9 1671 220 298 18 0 chr5 142462628 142462685 -10074574 - B1F1 SINE Alu -80 69 12 9 1671 411 21 0 0 chr5 142462830 142462878 -10074381 + (TTC)n Simple_repeat Simple_repeat 2 49 0 9 1671 1068 64 7 54 chr5 142462878 142463026 -10074233 - B1_Mus2 SINE Alu -2 145 5 9 1671 1025 155 0 6 chr5 142463157 142463332 -10073927 + URR1A DNA MER1_type 38 211 -15 9 1671 363 301 158 30 chr5 142463711 142463913 -10073346 - L1ME2 LINE L1 -7 6157 5930 9 1671 411 21 0 0 chr5 142463983 142464031 -10073228 + (TC)n Simple_repeat Simple_repeat 1 48 0 9 1671 396 0 0 0 chr5 142464031 142464075 -10073184 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1671 751 270 22 0 chr5 142465152 142465337 -10071922 - ID_B1 SINE B4 -34 190 2 9 1671 744 308 120 19 chr5 142465405 142465663 -10071596 - B4A SINE B4 -8 284 1 9 1671 261 308 0 15 chr5 142466386 142466452 -10070807 - B4 SINE B4 -4 288 224 9 1671 323 138 34 11 chr5 142466461 142466549 -10070710 + CT-rich Low_complexity Low_complexity 1 90 0 9 1671 542 305 21 33 chr5 142466564 142466767 -10070492 - B4 SINE B4 -49 243 45 9 1671 252 0 0 0 chr5 142466877 142466905 -10070354 + (CA)n Simple_repeat Simple_repeat 2 29 0 9 1671 1041 244 91 66 chr5 142466931 142467295 -10069964 - MTE2b LTR MaLR 0 379 7 9 1671 899 204 179 4 chr5 142467619 142467865 -10069394 - B4 SINE B4 -2 290 2 9 1671 672 127 0 0 chr5 142468058 142468168 -10069091 + (TC)n Simple_repeat Simple_repeat 1 110 0 9 1671 377 324 139 7 chr5 142468205 142468500 -10068759 - L1MC3 LINE L1 -192 7593 7260 9 1671 420 191 0 0 chr5 142468507 142468601 -10068658 + (TG)n Simple_repeat Simple_repeat 2 95 0 9 1671 1011 246 33 80 chr5 142468622 142468922 -10068337 - B4 SINE B4 0 292 7 9 1671 426 20 0 0 chr5 142469281 142469332 -10067927 + (CA)n Simple_repeat Simple_repeat 1 51 0 9 1671 250 352 22 0 chr5 142469525 142469664 -10067595 + (TATG)n Simple_repeat Simple_repeat 3 144 0 9 1671 541 316 0 0 chr5 142469695 142469872 -10067387 + (TG)n Simple_repeat Simple_repeat 1 177 0 9 1671 783 288 83 8 chr5 142469881 142470147 -10067112 - B4A SINE B4 -5 287 2 9 1671 366 42 0 0 chr5 142470937 142470985 -10066274 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 9 1671 307 218 12 25 chr5 142471130 142471210 -10066049 - MLT1A1 LTR MaLR 0 408 330 9 1671 282 29 0 0 chr5 142471334 142471369 -10065890 + (ATTG)n Simple_repeat Simple_repeat 1 35 0 9 1671 212 204 40 20 chr5 142471382 142471432 -10065827 - ID SINE ID -142 82 32 9 1671 1482 204 111 15 chr5 142471517 142471860 -10065399 - MTE2b LTR MaLR -2 377 2 9 1671 483 48 0 0 chr5 142472570 142472632 -10064627 + (TG)n Simple_repeat Simple_repeat 1 62 0 9 1671 661 299 89 8 chr5 142472670 142472906 -10064353 - B4A SINE B4 -23 269 15 9 1671 198 0 0 0 chr5 142473422 142473444 -10063815 + (TC)n Simple_repeat Simple_repeat 1 22 0 9 1671 1011 246 143 4 chr5 142474071 142474308 -10062951 + B4 SINE B4 3 272 -20 9 1671 658 258 93 32 chr5 142475003 142475211 -10062048 - ID_B1 SINE B4 -36 256 46 9 208 1210 211 111 124 chr5 142475211 142475590 -10061669 - MTE2a LTR MaLR 0 379 6 9 1672 282 247 0 125 chr5 142476313 142476401 -10060858 - B3A SINE B2 -9 189 113 9 1672 482 243 63 0 chr5 142476610 142476721 -10060538 - RSINE1 SINE B4 -43 122 5 9 1672 596 261 7 0 chr5 142476725 142476863 -10060396 - ID_B1 SINE B4 -5 219 81 9 1672 698 282 91 52 chr5 142478434 142478714 -10058545 + B4A SINE B4 1 272 -20 9 1672 765 124 0 0 chr5 142478714 142478843 -10058416 + (CA)n Simple_repeat Simple_repeat 2 130 0 9 1672 638 319 30 72 chr5 142478843 142478866 -10058393 + B4 SINE B4 269 291 -1 9 1672 853 256 28 19 chr5 142479237 142479448 -10057811 - ID_B1 SINE B4 -8 216 4 9 1672 290 244 69 115 chr5 142479699 142479829 -10057430 - ORR1E LTR MaLR -164 195 72 9 1672 1673 232 51 59 chr5 142479915 142480409 -10056850 - RMER5 LTR ERV1 -11 523 34 9 1672 284 266 147 4 chr5 142481905 142481998 -10055261 + PB1D10 SINE Alu 8 112 -8 9 1672 237 295 95 35 chr5 142482209 142482325 -10054934 + PB1 SINE Alu 3 125 -2 9 1672 1073 267 102 102 chr5 142482858 142483346 -10053913 - RMER5 LTR ERV1 -8 526 39 9 1672 502 289 269 0 chr5 142484559 142484715 -10052544 + B3A SINE B2 1 198 0 9 1672 1220 161 59 40 chr5 142484933 142485186 -10052073 - MTC LTR MaLR 0 421 164 9 1672 655 307 59 16 chr5 142486649 142486904 -10050355 - B4A SINE B4 -8 284 19 9 1672 495 87 0 0 chr5 142487547 142487616 -10049643 + (TG)n Simple_repeat Simple_repeat 2 70 0 9 1672 324 326 23 43 chr5 142487679 142487829 -10049430 + B4A SINE B4 86 242 -50 9 1672 228 284 85 64 chr5 142487956 142488050 -10049209 + B4 SINE B4 181 276 -16 9 1672 207 167 30 15 chr5 142488114 142488181 -10049078 + (TA)n Simple_repeat Simple_repeat 2 69 0 9 1672 260 298 84 69 chr5 142488914 142489128 -10048131 - MIRc SINE MIR -49 219 1 9 1672 288 0 0 0 chr5 142489319 142489351 -10047908 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1672 186 338 63 63 chr5 142489667 142489809 -10047450 + MIRm SINE MIR 99 240 -36 9 1672 787 211 100 23 chr5 142489980 142490200 -10047059 + MTD-int LTR MaLR 1055 1252 -6 9 1672 1464 255 54 39 chr5 142490211 142490409 -10046850 + MTD LTR MaLR 12 202 -217 9 1672 839 214 101 15 chr5 142490409 142490608 -10046651 + B3 SINE B2 1 216 0 9 1672 1464 255 54 39 chr5 142490608 142490797 -10046462 + MTD LTR MaLR 203 405 -14 9 1672 1315 222 107 73 chr5 142491130 142491514 -10045745 + MTD LTR MaLR 16 412 -7 9 1672 236 196 0 21 chr5 142492039 142492086 -10045173 + (CTTA)n Simple_repeat Simple_repeat 3 48 0 9 1672 1079 237 81 39 chr5 142492101 142492408 -10044851 - Lx8 LINE L1 -696 6777 6458 9 1672 822 217 127 0 chr5 142493159 142493348 -10043911 + ID_B1 SINE B4 5 217 -7 9 1672 393 221 260 7 chr5 142493844 142493990 -10043269 - B3A SINE B2 -14 184 2 9 1672 305 109 0 18 chr5 142494016 142494072 -10043187 + (TTCC)n Simple_repeat Simple_repeat 3 57 0 9 1672 543 226 145 70 chr5 142494073 142494301 -10042958 - ORR1E LTR MaLR -6 353 109 9 1672 230 296 0 36 chr5 142494561 142494645 -10042614 + G-rich Low_complexity Low_complexity 2 82 0 9 1672 187 173 19 19 chr5 142494659 142494712 -10042547 + GA-rich Low_complexity Low_complexity 1 53 0 9 1672 1341 153 18 14 chr5 142494801 142495020 -10042239 - URR1A DNA MER1_type -4 222 3 9 1672 985 238 42 28 chr5 142495577 142495812 -10041447 + B4 SINE B4 2 240 -52 9 1672 355 187 165 0 chr5 142495860 142495951 -10041308 - ORR1E LTR MaLR -264 106 1 9 1672 423 0 0 0 chr5 142496035 142496082 -10041177 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 9 1672 186 288 106 0 chr5 142496103 142496169 -10041090 + L3 LINE CR1 3385 3457 -1032 9 1672 567 281 106 42 chr5 142496465 142496729 -10040530 - RMER15 LTR ERVL 0 575 295 9 1672 334 268 61 61 chr5 142497297 142497368 -10039891 + B4A SINE B4 9 79 -213 9 1672 401 206 141 0 chr5 142497368 142497460 -10039799 + PB1D10 SINE Alu 1 105 -12 9 1672 1070 118 0 0 chr5 142497726 142497870 -10039389 - B1_Mur4 SINE Alu -6 144 1 9 1672 222 37 0 0 chr5 142498447 142498474 -10038785 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 9 1672 371 220 87 12 chr5 142499047 142499146 -10038113 - B1_Mur3 SINE Alu -11 109 3 9 1672 225 340 118 0 chr5 142499819 142499972 -10037287 - MLT2B3 LTR ERVL 0 554 384 9 1672 597 335 26 69 chr5 142500001 142500306 -10036953 - MT2A LTR ERVL -241 292 1 1 1672 477 0 0 0 chr5 142500754 142500807 -10036452 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 2 1672 228 312 0 0 chr5 142501097 142501225 -10036034 + (TG)n Simple_repeat Simple_repeat 1 128 0 3 1672 425 284 0 6 chr5 142501237 142501407 -10035852 + (TG)n Simple_repeat Simple_repeat 2 170 0 3 1672 646 270 173 14 chr5 142501445 142501674 -10035585 - B4A SINE B4 -22 270 1 4 1672 269 289 31 10 chr5 142501678 142501776 -10035483 - MLT1H1 LTR MaLR 0 555 456 5 1672 796 275 114 4 chr5 142502006 142502251 -10035008 + B4 SINE B4 1 272 -20 6 1672 294 87 0 0 chr5 142502255 142502301 -10034958 + (CA)n Simple_repeat Simple_repeat 1 46 0 7 1672 207 0 0 0 chr5 142502301 142502323 -10034936 + (GA)n Simple_repeat Simple_repeat 2 24 0 8 1672 283 200 29 126 chr5 142502642 142502745 -10034514 - PB1D10 SINE Alu -2 115 23 9 1672 1303 250 73 17 chr5 142502826 142503184 -10034075 - MTEa LTR MaLR 0 379 2 1 1672 484 297 99 23 chr5 142503472 142503734 -10033525 - L1MD LINE L1 -1287 4859 4578 1 1672 351 0 0 0 chr5 142503871 142503910 -10033349 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1672 551 290 237 18 chr5 142503927 142504155 -10033104 - B4A SINE B4 -7 285 8 1 1672 694 333 80 47 chr5 142504160 142504863 -10032396 - L1M4 LINE L1 -1772 4374 3649 1 1672 297 326 0 11 chr5 142505045 142505135 -10032124 + C-rich Low_complexity Low_complexity 5 93 0 1 1672 659 228 175 0 chr5 142505566 142505755 -10031504 - ID_B1 SINE B4 -1 223 2 1 1672 1322 184 80 20 chr5 142505814 142506114 -10031145 - Lx9 LINE L1 -17 7627 7310 1 1672 391 225 128 30 chr5 142506157 142506290 -10030969 + MTD LTR MaLR 228 373 -46 1 1672 625 278 103 11 chr5 142506296 142506361 -10030898 + B4 SINE B4 6 86 -206 1 1672 299 365 13 52 chr5 142506361 142506514 -10030745 + B1F SINE Alu 1 147 -2 2 1672 1251 200 5 0 chr5 142506523 142506738 -10030521 + B3 SINE B2 1 216 0 2 1672 1250 215 149 24 chr5 142506795 142507148 -10030111 - MTD LTR MaLR -14 405 8 2 1672 1125 226 100 11 chr5 142507894 142508154 -10029105 + B4A SINE B4 3 285 -7 2 1672 283 269 36 18 chr5 142508162 142508272 -10028987 + (CATA)n Simple_repeat Simple_repeat 4 115 0 2 1672 233 259 0 0 chr5 142508290 142508344 -10028915 + GA-rich Low_complexity Low_complexity 2 55 0 2 1672 315 0 0 0 chr5 142509115 142509150 -10028109 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1672 996 257 18 0 chr5 142509172 142509390 -10027869 - ID_B1 SINE B4 -2 222 1 2 1672 294 73 0 0 chr5 142509690 142509731 -10027528 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 1672 391 205 97 34 chr5 142509811 142509920 -10027339 + PB1 SINE Alu 18 125 -2 2 1672 1046 95 38 0 chr5 142509920 142510078 -10027181 + ZP3AR Satellite Satellite 38 201 -11 3 1672 313 224 30 0 chr5 142510078 142510145 -10027114 + ID4_ SINE ID 1 69 -14 3 1672 342 319 38 20 chr5 142511017 142511135 -10026124 + PB1D10 SINE Alu 1 127 0 3 1672 306 275 86 131 chr5 142511145 142511367 -10025892 + L1ME4a LINE L1 5693 5904 -220 3 1672 468 35 0 0 chr5 142511429 142511487 -10025772 + (TG)n Simple_repeat Simple_repeat 2 59 0 3 1672 662 292 50 18 chr5 142511489 142511709 -10025550 - B4A SINE B4 -38 254 28 3 1672 712 336 19 11 chr5 142511699 142511964 -10025295 + B4A SINE B4 26 292 0 3 1672 492 211 0 3 chr5 142511965 142512293 -10024966 + (CA)n Simple_repeat Simple_repeat 1 326 0 3 1672 1655 97 6 9 chr5 142513490 142513852 -10023407 - ZP3AR Satellite Satellite -1 360 1 3 1672 205 224 0 58 chr5 142514583 142514635 -10022624 - MIRc SINE MIR -106 162 114 3 1672 214 243 41 41 chr5 142514744 142514817 -10022442 - MIRc SINE MIR -188 80 8 3 1672 212 163 0 0 chr5 142514991 142515034 -10022225 + T-rich Low_complexity Low_complexity 4 46 0 4 1672 1065 73 0 0 chr5 142515037 142515174 -10022085 - B1_Mus1 SINE Alu 0 148 12 4 1672 751 238 24 24 chr5 142515766 142515930 -10021329 + B4 SINE B4 46 209 -83 4 1672 267 325 8 26 chr5 142516736 142516853 -10020406 + (TG)n Simple_repeat Simple_repeat 1 115 0 4 1672 501 237 379 14 chr5 142516883 142517097 -10020162 - B4 SINE B4 0 292 1 4 1672 270 218 192 0 chr5 142517980 142518058 -10019201 + B4A SINE B4 3 95 -197 4 1672 411 21 0 0 chr5 142518960 142519008 -10018251 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1672 944 280 49 45 chr5 142519031 142519319 -10017940 - B4 SINE B4 -2 290 2 4 1672 205 371 10 20 chr5 142519712 142519811 -10017448 + MIRb SINE MIR 131 228 -40 4 1672 501 248 20 0 chr5 142519988 142520089 -10017170 + PB1D9 SINE Alu 1 103 -17 4 1672 189 147 0 0 chr5 142520114 142520148 -10017111 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1672 946 244 95 9 chr5 142520276 142520507 -10016752 - MTE2b LTR MaLR -128 251 1 5 1672 429 198 0 0 chr5 142521592 142521683 -10015576 + (CA)n Simple_repeat Simple_repeat 1 91 0 5 1672 387 362 0 0 chr5 142522676 142522792 -10014467 + ID_B1 SINE B4 102 217 -7 5 1672 1032 212 10 5 chr5 142522864 142523068 -10014191 + B3 SINE B2 1 205 -11 5 1672 761 240 90 90 chr5 142523437 142523716 -10013543 + B4A SINE B4 4 282 -10 5 1672 324 274 8 42 chr5 142523725 142523843 -10013416 + (CATATA)n Simple_repeat Simple_repeat 6 119 0 5 1672 230 229 10 30 chr5 142523855 142523954 -10013305 + (CA)n Simple_repeat Simple_repeat 2 98 0 5 1672 216 250 29 29 chr5 142523956 142524026 -10013233 + (CATG)n Simple_repeat Simple_repeat 1 70 0 5 1672 220 296 72 27 chr5 142524527 142524638 -10012621 - MER5A DNA MER1_type -1 188 73 5 1672 626 249 130 0 chr5 142524779 142524948 -10012311 - B4A SINE B4 -14 278 88 6 1672 361 267 5 14 chr5 142525084 142525191 -10012068 - B4A SINE B4 -181 111 5 6 1672 180 211 42 0 chr5 142525979 142526050 -10011209 + CT-rich Low_complexity Low_complexity 1 74 0 6 1672 435 164 15 0 chr5 142526094 142526161 -10011098 - ID4 SINE ID -13 70 3 6 1672 678 295 98 21 chr5 142526207 142526401 -10010858 - ID_B1 SINE B4 -13 211 3 6 1672 1668 240 30 5 chr5 142527257 142527626 -10009633 - MTEa LTR MaLR 0 379 2 6 1672 297 208 0 0 chr5 142529034 142529106 -10008153 + CT-rich Low_complexity Low_complexity 4 75 0 6 1672 318 98 0 0 chr5 142529612 142529663 -10007596 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1672 514 350 91 69 chr5 142529716 142529992 -10007267 - B4 SINE B4 -10 282 1 6 1672 232 312 84 45 chr5 142530066 142530244 -10007015 - L1MC5 LINE L1 -1137 6824 6640 6 1672 954 275 10 0 chr5 142530266 142530473 -10006786 - B3 SINE B2 -7 209 1 6 1672 599 313 22 58 chr5 142531116 142531340 -10005919 - B4A SINE B4 0 292 77 7 1672 414 331 144 26 chr5 142531602 142531949 -10005310 - MLT1E2 LTR MaLR -9 618 231 7 1672 355 198 19 0 chr5 142532491 142532558 -10004701 + CT-rich Low_complexity Low_complexity 43 110 0 7 1672 3847 142 41 37 chr5 142532558 142533306 -10003953 + RMER17A LTR ERVK 1 751 0 7 1672 355 198 19 0 chr5 142533306 142533344 -10003915 + polypyrimidine Low_complexity Low_complexity 4 42 0 7 1672 251 229 21 0 chr5 142533364 142533412 -10003847 - ID4 SINE ID -34 49 1 7 1672 669 161 123 0 chr5 142533374 142533504 -10003755 - ZP3AR Satellite Satellite -25 187 42 7 1672 488 297 0 28 chr5 142533508 142533650 -10003609 - ID_B1 SINE B4 0 224 87 7 1672 517 354 30 39 chr5 142533655 142533887 -10003372 - L1MEd LINE L1 -1969 4177 3948 7 1672 709 234 64 0 chr5 142533937 142534078 -10003181 - RSINE1 SINE B4 -13 152 3 7 1672 471 247 113 12 chr5 142534331 142534499 -10002760 + Lx8 LINE L1 7038 7222 -251 8 1672 369 0 0 0 chr5 142534621 142534662 -10002597 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1672 232 170 21 0 chr5 142534775 142534822 -10002437 + C-rich Low_complexity Low_complexity 4 51 0 8 1672 1034 85 20 0 chr5 142535068 142535221 -10002038 - ZP3AR Satellite Satellite -55 157 2 8 1672 276 275 47 38 chr5 142535249 142535355 -10001904 - PB1D10 SINE Alu -8 109 3 8 1672 322 327 67 0 chr5 142535452 142535556 -10001703 - L1MEd LINE L1 -4405 1761 1651 7 1672 875 256 52 35 chr5 142535886 142536173 -10001086 - B4A SINE B4 0 292 1 8 1672 559 301 48 22 chr5 142536191 142536504 -10000755 - L1MEd LINE L1 -4873 1263 943 7 1672 252 0 0 0 chr5 142536601 142536629 -10000630 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1672 1112 264 36 47 chr5 142536641 142536919 -10000340 - B4 SINE B4 -16 276 2 8 1672 330 260 41 20 chr5 142536973 142537071 -10000188 - PB1D10 SINE Alu -17 100 1 8 1672 555 53 0 0 chr5 142538687 142538762 -9998497 + (TC)n Simple_repeat Simple_repeat 2 76 0 8 1672 198 0 0 0 chr5 142538762 142538783 -9998476 + (TG)n Simple_repeat Simple_repeat 1 22 0 9 1672 882 284 16 59 chr5 142538805 142539004 -9998255 - B4A SINE B4 -49 243 56 9 1672 2116 115 231 16 chr5 142539004 142539385 -9997874 - RMER4A LTR ERVK -3 463 1 9 1672 882 284 16 59 chr5 142539385 142539439 -9997820 - B4A SINE B4 -237 55 1 9 1672 697 256 11 64 chr5 142539509 142539697 -9997562 - B4 SINE B4 -114 178 1 9 1672 446 334 107 30 chr5 142541041 142541294 -9995965 + MER47A DNA MER2_type 2 272 -94 9 1672 207 0 0 0 chr5 142541294 142541317 -9995942 + (CAGGT)n Simple_repeat Simple_repeat 3 25 0 9 1672 446 334 107 30 chr5 142541317 142541399 -9995860 + MER47A DNA MER2_type 273 362 -4 9 1672 297 0 0 0 chr5 142541428 142541461 -9995798 + (TG)n Simple_repeat Simple_repeat 2 34 0 9 1672 1118 241 58 15 chr5 142541483 142541744 -9995515 - B4A SINE B4 -20 272 1 9 1672 3075 91 79 2 chr5 142541812 142542253 -9995006 - IAPLTR2_Mm LTR ERVK 0 475 1 9 1672 13892 50 9 3 chr5 142542255 142544010 -9993249 - IAPEz-int LTR ERVK -2 6479 4714 9 1672 1826 82 4 0 chr5 142544043 142544288 -9992971 - IAPEz-int LTR ERVK -5183 2497 2252 9 1672 901 76 0 0 chr5 142544289 142544408 -9992851 - IAPEz-int LTR ERVK -5004 1477 1359 9 1672 3753 59 2 18 chr5 142544408 142544911 -9992348 - IAPEz-int LTR ERVK -5819 662 168 9 1672 231 327 0 0 chr5 142544911 142544966 -9992293 - RLTR27 LTR ERVK -34 275 221 1 1672 963 107 100 12 chr5 142544966 142545136 -9992123 - IAPEz-int LTR ERVK -6288 193 9 9 1672 3025 86 99 0 chr5 142545137 142545569 -9991690 - IAPLTR2_Mm LTR ERVK 0 475 1 9 1672 237 83 0 0 chr5 142547010 142547046 -9990213 + (GA)n Simple_repeat Simple_repeat 1 36 0 1 1672 539 319 85 65 chr5 142547089 142547337 -9989922 - B4A SINE B4 -39 253 1 1 1672 815 282 68 26 chr5 142548149 142548415 -9988844 + B4A SINE B4 15 291 -1 1 1672 228 242 30 15 chr5 142548417 142548484 -9988775 + (CA)n Simple_repeat Simple_repeat 2 69 0 1 1672 203 199 19 56 chr5 142548494 142548654 -9988605 + (CATATA)n Simple_repeat Simple_repeat 2 155 0 1 1672 340 242 50 8 chr5 142548661 142548782 -9988477 + (CATA)n Simple_repeat Simple_repeat 4 129 0 1 1672 436 256 59 2 chr5 142549089 142549233 -9988026 + MLT1A0 LTR MaLR 1 163 -211 1 1672 874 207 63 37 chr5 142549251 142549442 -9987817 + ZP3AR Satellite Satellite 14 209 -3 1 1672 235 279 15 103 chr5 142549394 142549462 -9987797 + ID4_ SINE ID 16 77 -6 1 1672 211 255 0 41 chr5 142549420 142549469 -9987790 + ID SINE ID 37 83 -141 1 1672 276 231 0 0 chr5 142550080 142550132 -9987127 + B4A SINE B4 180 231 -61 1 1672 1068 236 0 5 chr5 142550133 142550342 -9986917 + B3 SINE B2 2 209 -7 1 1672 402 21 0 0 chr5 142550505 142550552 -9986707 + (GA)n Simple_repeat Simple_repeat 2 48 0 1 1672 530 302 67 57 chr5 142552087 142552240 -9985019 - MER58A DNA MER1_type -23 201 46 1 1672 375 23 0 0 chr5 142552240 142552284 -9984975 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1672 530 302 67 57 chr5 142552284 142552323 -9984936 - MER58A DNA MER1_type -179 45 7 1 1672 1144 185 114 48 chr5 142552539 142552811 -9984448 - B4A SINE B4 0 292 3 1 1672 309 258 114 23 chr5 142552816 142552947 -9984312 + LTR37B LTR ERV1 297 439 -29 1 1672 271 182 0 0 chr5 142554501 142554556 -9982703 - L1MB5 LINE L1 -6 6168 6114 1 1672 266 246 0 78 chr5 142554638 142554766 -9982493 + (CACCC)n Simple_repeat Simple_repeat 4 121 0 1 1672 314 325 170 28 chr5 142554771 142554989 -9982270 - L1MB5 LINE L1 -243 5931 5683 1 1672 216 351 36 0 chr5 142555058 142555169 -9982090 + (CATG)n Simple_repeat Simple_repeat 4 118 0 1 1672 210 284 62 83 chr5 142555658 142555754 -9981505 - L3 LINE CR1 -859 3630 3537 1 1672 480 132 0 0 chr5 142556111 142556194 -9981065 + (TG)n Simple_repeat Simple_repeat 2 84 0 1 1672 201 237 0 0 chr5 142556271 142556330 -9980929 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1672 281 259 8 0 chr5 142556412 142556543 -9980716 + (TG)n Simple_repeat Simple_repeat 2 133 0 1 1672 265 47 47 0 chr5 142556543 142556586 -9980673 + (GA)n Simple_repeat Simple_repeat 2 46 0 1 1672 613 292 48 149 chr5 142556586 142556749 -9980510 - B4 SINE B4 -68 224 76 1 1672 708 246 22 22 chr5 142556749 142556932 -9980327 - B3A SINE B2 -11 187 5 1 1672 613 292 48 149 chr5 142556932 142557017 -9980242 - B4 SINE B4 -217 75 1 1 1672 928 235 181 13 chr5 142557776 142558013 -9979246 + B4A SINE B4 8 284 -8 1 1672 570 146 47 6 chr5 142558036 142558208 -9979051 + (CA)n Simple_repeat Simple_repeat 2 180 0 1 1672 510 261 44 7 chr5 142559118 142559253 -9978006 + B1F SINE Alu 2 141 -8 1 1672 1622 55 0 0 chr5 142559260 142559529 -9977730 + ZP3AR Satellite Satellite 1 269 0 1 1672 1679 236 22 6 chr5 142559885 142560247 -9977012 - MTE2b LTR MaLR -9 370 3 1 1672 640 211 94 274 chr5 142561027 142561366 -9975893 + B4A SINE B4 3 280 -12 1 1672 194 0 0 37 chr5 142561964 142561991 -9975268 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1 1672 869 262 9 186 chr5 142561994 142562465 -9974794 - MTE2b LTR MaLR -13 366 2 1 1672 264 353 68 0 chr5 142562653 142562786 -9974473 - MLT1J2 LTR MaLR -18 430 289 1 1672 695 287 33 43 chr5 142563384 142563595 -9973664 - B4 SINE B4 0 292 84 1 1672 1048 204 52 5 chr5 142563601 142563793 -9973466 - B3 SINE B2 -15 201 1 1 1672 212 22 43 43 chr5 142563814 142563861 -9973398 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1672 363 273 0 0 chr5 142563864 142563941 -9973318 - B4 SINE B4 -212 80 4 1 1672 704 268 51 31 chr5 142564209 142564633 -9972626 + L1M4 LINE L1 5104 5534 -640 1 1672 713 284 81 98 chr5 142564696 142565055 -9972204 - MTEa LTR MaLR -9 370 18 1 1672 510 266 122 27 chr5 142565103 142565250 -9972009 + RSINE1 SINE B4 1 161 -4 1 1672 673 276 46 18 chr5 142566365 142566583 -9970676 - RMER15 LTR ERVL -13 562 339 1 1672 2072 163 32 9 chr5 142566779 142567119 -9970140 + MTE2b LTR MaLR 18 365 -14 1 1672 1071 330 0 14 chr5 142567780 142568069 -9969190 + B4 SINE B4 6 290 -2 1 1672 242 209 0 0 chr5 142568650 142568693 -9968566 + RMER30 DNA MER1_type 7 49 -153 1 1672 246 365 0 0 chr5 142568693 142568756 -9968503 - Charlie12 DNA MER1_type -2804 69 7 1 1672 341 172 101 22 chr5 142568974 142569063 -9968196 + B1F SINE Alu 43 138 -11 1 1672 1111 265 72 29 chr5 142569083 142569359 -9967900 + B4 SINE B4 5 292 0 1 1672 226 294 11 0 chr5 142569368 142569460 -9967799 + (CA)n Simple_repeat Simple_repeat 2 94 0 1 1672 362 0 69 0 chr5 142569478 142569536 -9967723 + (CA)n Simple_repeat Simple_repeat 2 63 0 1 1672 312 295 0 0 chr5 142569583 142569661 -9967598 + ID4_ SINE ID 2 79 -4 1 1672 294 29 0 0 chr5 142570174 142570209 -9967050 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1672 591 15 0 0 chr5 142570209 142570276 -9966983 + (GA)n Simple_repeat Simple_repeat 1 68 0 1 1672 264 312 21 11 chr5 142570280 142570374 -9966885 + (TG)n Simple_repeat Simple_repeat 2 96 0 1 1672 1642 32 2 2 chr5 142571180 142571532 -9965727 + ZP3AR Satellite Satellite 1 352 0 1 1672 263 296 14 0 chr5 142571532 142571603 -9965656 + ID4_ SINE ID 1 72 -11 1 1672 650 252 7 0 chr5 142571714 142571853 -9965406 - B1F SINE Alu -9 140 1 1 1672 1453 232 108 0 chr5 142573661 142574002 -9963257 - MTEa LTR MaLR 0 379 2 1 1672 1913 198 16 5 chr5 142574807 142575182 -9962077 - MTEa LTR MaLR 0 379 1 1 1672 1047 135 96 0 chr5 142575447 142575625 -9961634 + B2_Mm2 SINE B2 1 195 0 1 1672 321 309 0 87 chr5 142575639 142575742 -9961517 + B4A SINE B4 2 95 -197 1 1672 865 265 0 44 chr5 142575757 142575962 -9961297 + B3A SINE B2 1 196 -2 1 1672 1861 113 55 104 chr5 142577001 142577365 -9959894 - ORR1B1 LTR MaLR -8 386 41 1 1672 935 259 39 129 chr5 142577600 142577910 -9959349 + B4 SINE B4 9 290 -2 1 1672 369 0 0 0 chr5 142578786 142578827 -9958432 + (CTG)n Simple_repeat Simple_repeat 2 42 0 1 1672 226 229 0 116 chr5 142578827 142578896 -9958363 - MLT1A1 LTR MaLR -23 385 325 1 1672 520 234 12 132 chr5 142579218 142579385 -9957874 + B4 SINE B4 64 210 -82 1 1672 378 91 0 0 chr5 142579443 142579498 -9957761 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1672 246 274 0 16 chr5 142579629 142579692 -9957567 - ZP3AR Satellite Satellite -136 76 15 1 1672 923 133 228 0 chr5 142580137 142580317 -9956942 + URR1A DNA MER1_type 6 226 0 1 1672 841 190 135 25 chr5 142580323 142580523 -9956736 + ID_B1 SINE B4 1 222 -2 1 1672 187 384 31 31 chr5 142580686 142580815 -9956444 + MIR SINE MIR 8 136 -126 1 1672 1870 162 59 9 chr5 142580877 142581214 -9956045 + ORR1B1 LTR MaLR 41 394 0 1 1672 219 36 0 0 chr5 142581370 142581398 -9955861 + (TCTG)n Simple_repeat Simple_repeat 3 30 0 1 1672 633 269 6 55 chr5 142581504 142581685 -9955574 - B4A SINE B4 -117 175 4 1 1672 1210 299 89 16 chr5 142581844 142582272 -9954987 - MT2A LTR ERVL -74 459 1 1 1672 197 33 0 32 chr5 142582928 142582959 -9954300 + (TTTTG)n Simple_repeat Simple_repeat 4 33 0 1 1672 281 280 56 70 chr5 142584183 142584325 -9952934 - MER2 DNA MER2_type -70 275 136 1 1672 294 29 0 0 chr5 142584399 142584434 -9952825 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1672 453 76 0 0 chr5 142584435 142584501 -9952758 + (TG)n Simple_repeat Simple_repeat 1 66 0 1 1672 631 247 213 66 chr5 142584660 142584910 -9952349 - B4A SINE B4 0 292 6 1 1672 196 250 168 9 chr5 142584937 142585050 -9952209 - MIR3 SINE MIR -73 135 5 1 1672 227 232 0 55 chr5 142585060 142585133 -9952126 - ID4 SINE ID -14 69 1 1 1672 466 226 31 28 chr5 142585179 142585306 -9951953 - B1F1 SINE Alu -105 206 29 1 1672 976 17 0 0 chr5 142585358 142585475 -9951784 + B1_Mm SINE Alu 31 147 0 1 1672 324 120 0 0 chr5 142585475 142585525 -9951734 + (A)n Simple_repeat Simple_repeat 1 50 0 1 1672 797 251 20 40 chr5 142585623 142585822 -9951437 + B3A SINE B2 1 195 -3 1 1672 2797 161 23 13 chr5 142585953 142586476 -9950783 - RLTR11A LTR ERVK 0 528 1 1 1672 1337 271 70 41 chr5 142586815 142587274 -9949985 - RMER5 LTR ERV1 0 534 63 1 1672 310 214 96 104 chr5 142587635 142587760 -9949499 - RMER30 DNA MER1_type -2 200 77 1 1672 507 241 184 12 chr5 142588047 142588215 -9949044 + B3 SINE B2 13 209 -7 1 1672 226 288 60 33 chr5 142588244 142588395 -9948864 - Lx2 LINE L1 -1250 5747 5593 1 1672 348 302 12 0 chr5 142588403 142588489 -9948770 - RMER30 DNA MER1_type -115 87 1 1 1672 242 132 0 19 chr5 142590695 142590749 -9946510 + (TG)n Simple_repeat Simple_repeat 2 54 0 1 1672 521 250 75 25 chr5 142590776 142590936 -9946323 - B4A SINE B4 -4 288 121 1 1672 1114 168 5 25 chr5 142590957 142591153 -9946106 - URR1B DNA MER1_type -32 193 2 1 1672 404 309 18 81 chr5 142591153 142591169 -9946090 + CYRA11_Mm Unknown Y-chromosome 264 401 -216 1 1672 838 154 49 0 chr5 142591530 142591673 -9945586 - URR1B DNA MER1_type 0 225 76 1 1672 235 322 110 19 chr5 142591583 142591738 -9945521 - CYRA11_Mm Unknown Y-chromosome -315 302 134 1 1672 317 292 81 24 chr5 142593038 142593161 -9944098 - MTE2b LTR MaLR 0 379 250 1 1672 1177 133 6 0 chr5 142593225 142593398 -9943861 - RLTR41 LTR ERV1 0 446 273 1 1672 1078 63 7 0 chr5 142593432 142593574 -9943685 - B1_Mus1 SINE Alu 0 148 6 2 1672 611 204 12 82 chr5 142593574 142593600 -9943659 - ID_B1 SINE B4 0 221 66 2 1672 316 318 78 43 chr5 142593579 142593694 -9943565 - B4 SINE B4 -160 132 14 1 1672 432 0 0 0 chr5 142593721 142593769 -9943490 + (TC)n Simple_repeat Simple_repeat 1 48 0 2 1672 988 258 41 12 chr5 142593959 142594202 -9943057 - B4 SINE B4 -41 251 2 2 1672 702 268 69 109 chr5 142595077 142595324 -9941935 - B4 SINE B4 -42 250 14 2 1672 192 135 0 0 chr5 142595715 142595752 -9941507 + (G)n Simple_repeat Simple_repeat 1 37 0 2 1672 211 277 0 88 chr5 142595757 142595939 -9941320 + G-rich Low_complexity Low_complexity 5 170 0 2 1672 922 277 128 27 chr5 142595968 142596305 -9940954 - MTE2b LTR MaLR -1 378 8 2 1672 31 44 0 0 chr5 142596640 142596685 -9940574 + AT_rich Low_complexity Low_complexity 1 45 0 2 1672 1847 165 95 19 chr5 142597446 142597805 -9939454 - ORR1B1 LTR MaLR -8 386 1 2 1672 315 340 128 20 chr5 142598159 142598363 -9938896 - MIRb SINE MIR -6 262 37 2 1672 407 241 267 20 chr5 142599077 142599167 -9938092 - Lx8 LINE L1 -7 7466 7365 2 1672 306 0 0 0 chr5 142599167 142599201 -9938058 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 1672 407 241 267 20 chr5 142599201 142599305 -9937954 - Lx8 LINE L1 -109 7364 7224 2 1672 293 314 39 0 chr5 142599314 142599416 -9937843 + B3 SINE B2 110 215 -1 2 1672 1064 202 20 10 chr5 142599422 142599617 -9937642 + B3A SINE B2 2 198 0 2 1672 1905 269 96 13 chr5 142599625 142600238 -9937021 - Lx8 LINE L1 -252 7221 6558 2 1672 913 264 42 5 chr5 142600450 142600663 -9936596 + ID_B1 SINE B4 2 222 -2 2 1672 596 148 0 9 chr5 142600664 142600773 -9936486 + GA-rich Low_complexity Low_complexity 1 108 0 2 1672 1151 112 0 6 chr5 142600773 142600953 -9936306 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 2 1672 689 239 167 54 chr5 142601107 142601346 -9935913 - B4A SINE B4 -23 269 4 2 1672 1136 61 0 0 chr5 142601500 142601632 -9935627 - B1_Mus1 SINE Alu -15 133 2 2 1672 2185 124 17 11 chr5 142601632 142601984 -9935275 - ORR1B1 LTR MaLR -40 354 1 2 1672 1512 241 114 13 chr5 142602505 142602954 -9934305 - RMER5 LTR ERV1 -8 526 33 2 1672 351 96 0 0 chr5 142602971 142603023 -9934236 + (TCTCC)n Simple_repeat Simple_repeat 5 56 0 2 1672 216 0 0 0 chr5 142603666 142603690 -9933569 + (CAGA)n Simple_repeat Simple_repeat 4 27 0 2 1672 1502 248 61 45 chr5 142604670 142605142 -9932117 - RMER5 LTR ERV1 -9 525 46 2 1672 627 303 81 19 chr5 142605515 142605774 -9931485 + B4A SINE B4 3 277 -15 2 1673 1043 105 19 0 chr5 142606374 142606536 -9930723 - ZP3AR Satellite Satellite -1 211 47 2 1673 207 0 0 0 chr5 142606703 142606726 -9930533 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2 1673 698 252 0 54 chr5 142606726 142606873 -9930386 - B1_Mur4 SINE Alu -9 141 3 2 1673 988 119 268 38 chr5 142606964 142607147 -9930112 - URR1B DNA MER1_type 0 225 1 2 1673 1222 14 0 14 chr5 142608567 142608701 -9928558 + B1_Mm SINE Alu 3 136 -11 2 1673 209 33 0 32 chr5 142608701 142608732 -9928527 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 2 1673 892 82 0 0 chr5 142609348 142609470 -9927789 + B1_Mm SINE Alu 24 145 -2 2 1673 822 21 0 0 chr5 142609470 142609566 -9927693 + (GAAA)n Simple_repeat Simple_repeat 2 97 0 2 1673 1022 230 98 0 chr5 142609601 142609836 -9927423 - MTE2b LTR MaLR -119 260 3 2 1673 1179 231 86 3 chr5 142611961 142612252 -9925007 - MTEa LTR MaLR -4 375 61 2 1673 342 0 0 0 chr5 142612790 142612828 -9924431 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1673 776 283 29 93 chr5 142612867 142613147 -9924112 - B4A SINE B4 0 292 31 2 1673 1144 256 136 0 chr5 142613720 142614052 -9923207 - MTE2b LTR MaLR -2 377 1 2 1673 1036 275 106 12 chr5 142615170 142615490 -9921769 + MTD LTR MaLR 56 405 -14 2 1673 288 200 0 41 chr5 142617035 142617108 -9920151 + B4 SINE B4 169 238 -54 2 1673 436 276 57 0 chr5 142617078 142617098 -9920161 + B4 SINE B4 66 194 -97 2 1673 725 98 0 0 chr5 142617098 142617200 -9920059 + B1_Mm SINE Alu 2 103 -44 2 1673 516 32 0 0 chr5 142617205 142617267 -9919992 + (CA)n Simple_repeat Simple_repeat 2 63 0 2 1673 435 292 169 16 chr5 142617614 142617868 -9919391 - MLT1C LTR MaLR -78 389 97 2 1673 2172 130 61 46 chr5 142617891 142618303 -9918956 - RLTR9B LTR ERVK -19 418 1 2 1673 2469 150 122 19 chr5 142618469 142618952 -9918307 - MT2A LTR ERVL 0 533 1 2 1673 468 247 273 0 chr5 142619116 142619325 -9917934 - B4 SINE B4 -20 272 7 2 1673 610 279 18 36 chr5 142619359 142619526 -9917733 + RSINE1 SINE B4 2 165 0 2 1673 329 323 12 71 chr5 142620199 142620274 -9916985 + MT2B LTR ERVL 94 233 -368 2 1673 432 165 35 12 chr5 142620274 142620360 -9916899 + PB1D9 SINE Alu 2 89 -31 2 1673 416 287 19 0 chr5 142621100 142621208 -9916051 - B4 SINE B4 -181 111 2 2 1673 261 139 0 0 chr5 142621351 142621394 -9915865 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1673 459 0 0 0 chr5 142621396 142621447 -9915812 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2 1673 1023 236 20 0 chr5 142621493 142621696 -9915563 - B3 SINE B2 -2 214 8 2 1673 653 201 27 20 chr5 142621776 142621923 -9915336 + ID_B1 SINE B4 2 149 -75 2 1673 265 347 48 40 chr5 142622570 142622696 -9914563 - MTEa LTR MaLR -229 150 24 2 1673 1209 245 32 95 chr5 142622770 142623117 -9914142 - MTE2b LTR MaLR -39 340 16 2 1673 201 315 61 61 chr5 142623165 142623280 -9913979 - MIRc SINE MIR -109 159 45 2 1673 1806 198 23 55 chr5 142623308 142623692 -9913567 + MTE2b LTR MaLR 1 372 -7 2 1673 201 39 0 0 chr5 142623705 142623731 -9913528 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 1673 253 121 0 65 chr5 142624122 142624184 -9913075 + (TATG)n Simple_repeat Simple_repeat 3 60 0 2 1673 622 245 79 0 chr5 142624213 142624352 -9912907 - RSINE1 SINE B4 -7 158 9 2 1673 278 306 0 0 chr5 142624476 142624548 -9912711 + MIRc SINE MIR 56 127 -141 2 1673 396 0 0 0 chr5 142625015 142625059 -9912200 + (CTGGGG)n Simple_repeat Simple_repeat 6 49 0 2 1673 688 233 108 0 chr5 142625129 142625305 -9911954 - ID_B1 SINE B4 -5 219 25 2 1673 238 286 32 0 chr5 142625927 142625990 -9911269 + ID4 SINE ID 16 80 -3 2 1673 287 255 21 11 chr5 142625991 142626086 -9911173 + RSINE1 SINE B4 1 96 -69 2 1673 208 219 0 0 chr5 142626086 142626127 -9911132 + G-rich Low_complexity Low_complexity 2 42 0 2 1673 763 232 18 63 chr5 142626127 142626314 -9910945 + B4 SINE B4 82 265 -27 2 1673 225 0 0 0 chr5 142626314 142626339 -9910920 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 1673 763 232 18 63 chr5 142626339 142626372 -9910887 + B4 SINE B4 266 292 0 2 1673 694 214 8 0 chr5 142626703 142626834 -9910425 - RSINE1 SINE B4 0 165 34 2 1673 717 250 11 43 chr5 142626842 142627026 -9910233 - B3A SINE B2 0 198 21 2 1673 577 289 12 19 chr5 142627010 142627172 -9910087 + ID_B1 SINE B4 62 222 -2 2 1673 1258 57 6 0 chr5 142627833 142628008 -9909251 - ZP3AR Satellite Satellite -35 177 2 2 1673 1408 157 0 0 chr5 142628292 142628515 -9908744 - URR1B DNA MER1_type 0 225 3 2 1673 184 304 248 9 chr5 142628647 142628760 -9908499 + MIRb SINE MIR 17 156 -112 2 1673 532 148 9 9 chr5 142628879 142628988 -9908271 + GA-rich Low_complexity Low_complexity 1 109 0 2 1673 1724 196 56 8 chr5 142629675 142630035 -9907224 - MTE2b LTR MaLR 0 379 3 2 1673 658 317 182 20 chr5 142630242 142630593 -9906666 + MTD LTR MaLR 12 419 0 2 1673 662 133 0 9 chr5 142630686 142630800 -9906459 + (TTTCC)n Simple_repeat Simple_repeat 4 116 0 2 1673 1074 49 28 0 chr5 142630800 142630944 -9906315 - B1_Mus1 SINE Alu 0 148 1 2 1673 242 192 135 0 chr5 142630971 142631023 -9906236 - B4 SINE B4 -227 65 7 2 1673 1099 54 0 39 chr5 142631182 142631199 -9906060 - B1_Mus1 SINE Alu 0 148 137 2 1673 711 28 56 0 chr5 142631199 142631306 -9905953 + (TTTTG)n Simple_repeat Simple_repeat 3 115 0 2 1673 1099 54 0 39 chr5 142631306 142631441 -9905818 - B1_Mus1 SINE Alu -12 136 2 2 1673 651 274 58 5 chr5 142631812 142632017 -9905242 + B4A SINE B4 1 216 -76 2 1673 1934 128 63 34 chr5 142632014 142632363 -9904896 - ORR1B2 LTR MaLR -8 359 1 2 1673 336 259 71 0 chr5 142632363 142632447 -9904812 + B4A SINE B4 203 292 0 2 1673 203 125 0 24 chr5 142632463 142632504 -9904755 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 1673 297 0 0 0 chr5 142632685 142632718 -9904541 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 1673 826 260 109 30 chr5 142633644 142633677 -9903582 + B4A SINE B4 6 38 -254 2 1673 333 0 0 0 chr5 142633677 142633714 -9903545 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1673 826 260 109 30 chr5 142633714 142633946 -9903313 + B4A SINE B4 39 292 0 2 1673 347 217 14 0 chr5 142633950 142634019 -9903240 + B4A SINE B4 223 292 0 2 1673 207 239 41 27 chr5 142634020 142634093 -9903166 + (CATA)n Simple_repeat Simple_repeat 4 77 0 2 1673 314 312 27 18 chr5 142634150 142634261 -9902998 + Charlie4a DNA MER1_type 348 459 -49 2 1673 503 109 52 46 chr5 142635041 142635214 -9902045 + (TG)n Simple_repeat Simple_repeat 2 175 0 2 1673 480 172 53 0 chr5 142635256 142635425 -9901834 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 1673 617 151 42 0 chr5 142635449 142635615 -9901644 + (TG)n Simple_repeat Simple_repeat 1 173 0 2 1673 246 62 0 0 chr5 142635632 142635664 -9901595 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 1673 523 264 0 149 chr5 142635698 142635912 -9901347 - B4 SINE B4 -5 287 106 2 1673 203 0 37 0 chr5 142635914 142635941 -9901318 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 2 1673 495 33 0 0 chr5 142637017 142637078 -9900181 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 1673 267 271 14 0 chr5 142637089 142637159 -9900100 - B4 SINE B4 0 292 222 2 1673 362 286 151 0 chr5 142637166 142637285 -9899974 - B3A SINE B2 0 198 62 2 1673 389 239 166 7 chr5 142637302 142637441 -9899818 - B4 SINE B4 -50 242 82 2 1673 461 287 93 15 chr5 142637949 142638154 -9899105 + ID_B1 SINE B4 2 222 -2 3 1673 1252 241 60 35 chr5 142638515 142638863 -9898396 - ORR1E LTR MaLR -2 357 1 3 1673 754 142 6 102 chr5 142639014 142639171 -9898088 + B1_Mus2 SINE Alu 1 142 -5 3 1673 328 211 25 34 chr5 142639751 142639869 -9897390 + C-rich Low_complexity Low_complexity 6 122 0 3 1673 364 323 6 25 chr5 142639883 142640042 -9897217 + GA-rich Low_complexity Low_complexity 5 160 0 3 1673 541 269 86 20 chr5 142640638 142640835 -9896424 + B4A SINE B4 1 210 -82 3 1673 366 288 25 82 chr5 142641437 142641596 -9895663 - MER104 DNA Tc2 -3 178 29 3 1673 213 204 0 0 chr5 142642395 142642446 -9894813 - MIRb SINE MIR 0 262 212 3 1673 895 274 27 68 chr5 142642492 142642786 -9894473 + B4 SINE B4 8 289 -3 3 1673 275 232 18 0 chr5 142642959 142643015 -9894244 - RSINE1 SINE B4 -108 57 1 3 1673 264 274 11 45 chr5 142643455 142643543 -9893716 - B1_Mur4 SINE Alu 0 150 66 3 1673 219 213 0 0 chr5 142643509 142643556 -9893703 - B1F SINE Alu -22 127 81 3 1673 301 200 0 0 chr5 142643928 142643983 -9893276 + HAL1-3A_ME LINE L1 1979 2033 -825 3 1673 363 223 60 67 chr5 142644464 142644613 -9892646 + B1F SINE Alu 2 149 0 3 1673 756 84 0 0 chr5 142644614 142644721 -9892538 + ZP3AR Satellite Satellite 42 148 -64 3 1673 345 222 25 0 chr5 142644721 142644802 -9892457 + ID4 SINE ID 1 83 0 3 1673 1410 56 0 0 chr5 142644802 142644982 -9892277 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3 1673 734 349 36 0 chr5 142646813 142647062 -9890197 + Tigger7 DNA MER2_type 14 271 -2220 3 1673 329 270 0 0 chr5 142647120 142647194 -9890065 + Tigger7 DNA MER2_type 194 267 -2224 3 1673 331 267 0 0 chr5 142647196 142647271 -9889988 + Tigger7 DNA MER2_type 193 267 -2224 3 1673 268 280 10 70 chr5 142647273 142647373 -9889886 + Tigger7 DNA MER2_type 193 286 -2205 3 1673 357 303 22 22 chr5 142647419 142647554 -9889705 + Tigger7 DNA MER2_type 197 331 -2160 3 1673 361 228 156 39 chr5 142648581 142648609 -9888650 + B1F SINE Alu 1 143 -6 3 1673 512 140 140 0 chr5 142648609 142648709 -9888550 + ID_B1 SINE B4 105 218 -6 3 1673 518 228 0 3 chr5 142648816 142648921 -9888338 - B1F SINE Alu -15 102 1 3 1673 432 97 0 0 chr5 142649147 142649209 -9888050 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1673 705 129 189 0 chr5 142649253 142649385 -9887874 - URR1A DNA MER1_type -69 157 1 3 1673 342 0 0 0 chr5 142649459 142649497 -9887762 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1673 759 241 89 50 chr5 142650246 142650504 -9886755 + B4A SINE B4 2 269 -23 3 1673 320 302 6 0 chr5 142650624 142650796 -9886463 + (CA)n Simple_repeat Simple_repeat 2 174 0 3 1673 735 227 108 0 chr5 142650864 142651058 -9886201 - B3 SINE B2 0 216 2 3 1673 679 249 121 5 chr5 142651113 142651311 -9885948 - ID_B1 SINE B4 -1 223 2 3 1673 520 312 132 69 chr5 142651337 142651671 -9885588 - ORR1E LTR MaLR 0 359 5 3 1673 226 247 81 12 chr5 142651749 142651835 -9885424 - L1MA4 LINE L1 -358 5942 5851 3 1673 909 271 92 9 chr5 142651866 142652219 -9885040 - L1MA4 LINE L1 -424 5876 5516 3 1673 1021 174 50 20 chr5 142652687 142652887 -9884372 + URR1B DNA MER1_type 1 206 -19 3 1673 260 289 154 77 chr5 142652892 142653087 -9884172 + B4A SINE B4 67 276 -16 3 1673 436 112 25 12 chr5 142653235 142653316 -9883943 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 3 1673 465 178 27 45 chr5 142654575 142654687 -9882572 + PB1D10 SINE Alu 1 110 -7 3 1673 428 167 0 25 chr5 142654699 142654779 -9882480 + B4 SINE B4 2 79 -213 3 1673 249 292 0 62 chr5 142654779 142654812 -9882447 + BC1_Mm scRNA scRNA 2 107 -45 3 1673 261 253 149 0 chr5 142654817 142654904 -9882355 + B4 SINE B4 191 290 -2 3 1673 933 24 24 0 chr5 142654915 142655039 -9882220 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 3 1673 204 67 0 0 chr5 142656795 142656825 -9880434 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1673 769 203 52 21 chr5 142657520 142657711 -9879548 + B3A SINE B2 2 198 0 3 1673 489 312 71 28 chr5 142658309 142658520 -9878739 - MIR SINE MIR -22 240 21 3 1673 696 204 28 0 chr5 142658544 142658686 -9878573 - ID_B1 SINE B4 -1 223 78 3 1673 762 235 132 41 chr5 142658886 142658910 -9878349 - B4 SINE B4 0 292 275 3 1673 258 56 0 0 chr5 142658910 142658946 -9878313 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 3 1673 762 235 132 41 chr5 142658946 142659187 -9878072 - B4 SINE B4 -18 274 3 3 1673 242 240 0 0 chr5 142659207 142659257 -9878002 - L1MB3 LINE L1 -71 6112 6063 3 1673 616 329 74 3 chr5 142659289 142659588 -9877671 - L1MB3 LINE L1 -191 5992 5673 3 1673 378 256 0 0 chr5 142659647 142659729 -9877530 + ZP3AR Satellite Satellite 44 125 -87 3 1673 400 336 8 0 chr5 142659995 142660114 -9877145 + RSINE1 SINE B4 43 162 -3 3 1673 3752 116 71 39 chr5 142660310 142661001 -9876258 - RMER6A LTR ERVK -6 750 38 3 1673 492 214 179 33 chr5 142661565 142661749 -9875510 + B4 SINE B4 69 279 -13 3 1673 268 318 24 0 chr5 142662584 142662669 -9874590 - L2c LINE L2 -47 3340 3254 3 1673 1090 268 71 40 chr5 142663067 142663267 -9873992 - MTE2a LTR MaLR 0 379 164 3 1673 1991 137 83 0 chr5 142663267 142663604 -9873655 - ORR1B2 LTR MaLR -2 365 1 3 1673 1090 268 71 40 chr5 142663604 142663757 -9873502 - MTE2a LTR MaLR -216 163 15 3 1673 1549 27 5 0 chr5 142664226 142664761 -9872498 + ZP3AR Satellite Satellite 1 537 0 3 1673 453 344 6 6 chr5 142665630 142665788 -9871471 + B4 SINE B4 1 158 -134 3 1673 990 87 0 0 chr5 142666047 142666185 -9871074 + (TCTCC)n Simple_repeat Simple_repeat 3 140 0 3 1673 545 246 8 24 chr5 142666699 142666824 -9870435 + B4A SINE B4 1 123 -169 3 1673 437 293 0 0 chr5 142666833 142666932 -9870327 - MTE2b LTR MaLR -280 99 1 3 1673 555 286 26 7 chr5 142666933 142667088 -9870171 + RSINE1 SINE B4 2 159 -6 3 1673 549 0 0 0 chr5 142667097 142667158 -9870101 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 3 1673 710 135 167 0 chr5 142667218 142667344 -9869915 + B1_Mus1 SINE Alu 2 148 0 3 1673 208 28 26 53 chr5 142667344 142667382 -9869877 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 3 1673 658 271 93 5 chr5 142668513 142668717 -9868542 + B4 SINE B4 2 223 -69 3 1673 458 272 46 23 chr5 142668724 142668897 -9868362 + B4A SINE B4 8 184 -108 3 1673 307 256 23 23 chr5 142668902 142668990 -9868269 + RSINE1 SINE B4 78 165 0 3 1673 411 355 87 33 chr5 142669367 142669734 -9867525 - LTR84b LTR ERVL -368 393 7 3 1673 437 273 23 38 chr5 142669842 142669988 -9867271 + B1F SINE Alu 1 144 -5 3 1673 1350 136 15 6 chr5 142669969 142670277 -9866982 + ZP3AR Satellite Satellite 1 310 0 3 1673 478 252 9 0 chr5 142671023 142671130 -9866129 + PB1D10 SINE Alu 1 108 -9 3 1673 822 278 112 4 chr5 142671141 142671401 -9865858 + B4A SINE B4 1 288 -4 3 1673 626 197 39 58 chr5 142671659 142671815 -9865444 + RSINE1 SINE B4 13 165 0 3 1673 268 294 114 34 chr5 142671815 142671830 -9865429 + B3A SINE B2 12 196 -2 3 1673 864 258 31 34 chr5 142672178 142672471 -9864788 + B4A SINE B4 1 292 0 3 1673 362 295 21 0 chr5 142672895 142672990 -9864269 - RMER30 DNA MER1_type -1 201 105 3 1673 434 281 0 83 chr5 142673004 142673136 -9864123 + B4A SINE B4 172 292 0 3 1673 225 233 58 11 chr5 142673994 142674081 -9863178 - RMER15 LTR ERVL -10 565 475 3 1673 1146 222 167 0 chr5 142674098 142674404 -9862855 - MTE2b LTR MaLR -14 365 9 3 1673 2073 155 5 53 chr5 142674928 142675323 -9861936 - ORR1C1 LTR MaLR 0 378 3 3 1673 663 261 114 0 chr5 142675541 142675725 -9861534 + B4A SINE B4 1 205 -87 3 1673 246 202 73 92 chr5 142675629 142675738 -9861521 + B1_Mur4 SINE Alu 24 130 -20 3 1673 264 30 0 0 chr5 142675799 142675832 -9861427 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1673 966 223 14 19 chr5 142677182 142677397 -9859862 + ID_B1 SINE B4 3 216 -8 3 1673 228 351 39 50 chr5 142677542 142677722 -9859537 - RLTR22_Mur LTR ERVK -375 1473 1296 3 1673 538 288 205 13 chr5 142677827 142678066 -9859193 - RMER15 LTR ERVL -15 560 276 3 1673 412 264 31 49 chr5 142678069 142678232 -9859027 - RMER15 LTR ERVL -415 160 1 3 1673 708 162 206 11 chr5 142679214 142679389 -9857870 + ID_B1 SINE B4 1 209 -15 3 1673 764 245 41 41 chr5 142679789 142680010 -9857249 + B4 SINE B4 1 221 -71 3 1673 434 287 136 16 chr5 142679978 142680162 -9857097 + B4A SINE B4 15 220 -72 3 1673 216 0 0 0 chr5 142680163 142680187 -9857072 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 1673 221 0 35 0 chr5 142680187 142680215 -9857044 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 1673 387 141 0 0 chr5 142680537 142680601 -9856658 + (GGGA)n Simple_repeat Simple_repeat 1 64 0 3 1673 1165 254 38 7 chr5 142681119 142681412 -9855847 - MTEa LTR MaLR -74 305 4 3 1673 327 277 139 0 chr5 142681524 142681625 -9855634 - ORR1E LTR MaLR -10 369 255 3 1673 490 312 26 16 chr5 142681652 142681841 -9855418 - ORR1E LTR MaLR -167 192 2 3 1673 1021 265 21 35 chr5 142681958 142682247 -9855012 + B4 SINE B4 8 292 0 3 1673 330 205 0 0 chr5 142682255 142682333 -9854926 + (CA)n Simple_repeat Simple_repeat 1 78 0 3 1673 1458 71 12 0 chr5 142683110 142683453 -9853806 + ZP3AR Satellite Satellite 1 347 -107 3 1673 2308 21 4 0 chr5 142683826 142684107 -9853152 - L1Md_F3 LINE L1 -647 5937 5656 3 1673 260 294 8 76 chr5 142684726 142684844 -9852415 + PB1D10 SINE Alu 1 110 -7 3 1673 351 65 0 0 chr5 142684849 142684895 -9852364 + (GGGA)n Simple_repeat Simple_repeat 4 49 0 3 1673 1101 44 0 0 chr5 142685187 142685322 -9851937 + B1_Mus1 SINE Alu 1 135 -13 3 1673 315 0 0 0 chr5 142685322 142685357 -9851902 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 3 1673 545 283 52 6 chr5 142685936 142686110 -9851149 + B3A SINE B2 1 182 -16 3 1673 616 269 41 6 chr5 142686137 142686309 -9850950 - B3 SINE B2 -4 212 35 3 1673 763 105 0 0 chr5 142686359 142686473 -9850786 + MTB_Mm LTR MaLR 1 114 -293 4 1673 317 317 63 21 chr5 142686550 142686692 -9850567 + B4A SINE B4 127 274 -18 4 1673 2878 64 23 3 chr5 142686787 142687179 -9850080 - MTB LTR MaLR 0 400 1 4 1673 1287 187 129 44 chr5 142687254 142687448 -9849811 - ORR1D2 LTR MaLR 0 370 182 4 1673 189 0 0 0 chr5 142687448 142687469 -9849790 + (GA)n Simple_repeat Simple_repeat 2 22 0 4 1673 1287 187 129 44 chr5 142687469 142687615 -9849644 - ORR1D2 LTR MaLR -189 181 1 4 1673 343 257 6 23 chr5 142689763 142689938 -9847321 + CT-rich Low_complexity Low_complexity 3 174 0 4 1673 1200 126 77 5 chr5 142690443 142690651 -9846608 + URR1A DNA MER1_type 1 223 -3 4 1673 21 0 0 0 chr5 142691510 142691531 -9845728 + AT_rich Low_complexity Low_complexity 1 21 0 4 1673 1082 272 7 4 chr5 142691628 142691901 -9845358 - B4 SINE B4 -14 278 5 4 1673 802 290 92 4 chr5 142692372 142692621 -9844638 + B4A SINE B4 1 271 -21 4 1673 414 57 0 0 chr5 142692652 142692705 -9844554 + (CA)n Simple_repeat Simple_repeat 1 53 0 4 1673 260 267 13 0 chr5 142693110 142693185 -9844074 + L1MDa LINE L1 1054 1129 -5504 4 1673 472 218 49 143 chr5 142693347 142693550 -9843709 - MTE2a LTR MaLR -45 334 151 4 1673 190 147 38 51 chr5 142693630 142693709 -9843550 + GA-rich Low_complexity Low_complexity 4 81 0 4 1673 294 253 56 22 chr5 142693989 142694078 -9843181 + PB1 SINE Alu 33 124 -3 4 1673 657 136 10 0 chr5 142694093 142694196 -9843063 + ZP3AR Satellite Satellite 45 148 -64 4 1673 277 296 0 0 chr5 142694196 142694277 -9842982 + ID4_ SINE ID 2 82 -1 4 1673 867 239 72 79 chr5 142694754 142694821 -9842438 + B4 SINE B4 4 80 -212 4 1673 180 0 0 0 chr5 142694821 142694841 -9842418 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4 1673 867 239 72 79 chr5 142694841 142695064 -9842195 + B4 SINE B4 81 291 -1 4 1673 28 0 0 0 chr5 142695156 142695184 -9842075 + AT_rich Low_complexity Low_complexity 1 28 0 4 1673 590 218 96 22 chr5 142695195 142695331 -9841928 + B1_Mur2 SINE Alu 2 147 -2 4 1673 385 302 37 85 chr5 142696325 142696513 -9840746 + ORR1E LTR MaLR 176 354 -5 4 1673 498 271 35 70 chr5 142696566 142696737 -9840522 - B3A SINE B2 -2 214 50 4 1673 1634 154 148 6 chr5 142696742 142697081 -9840178 - ORR1B1 LTR MaLR -7 387 1 4 1673 307 179 0 0 chr5 142697081 142697135 -9840124 - B3A SINE B2 -143 55 2 4 1673 301 326 46 6 chr5 142697340 142697513 -9839746 - L1M5 LINE L1 -311 5862 5683 4 1673 548 234 117 38 chr5 142697558 142697748 -9839511 - B3A SINE B2 -1 194 1 4 1673 297 159 0 0 chr5 142697752 142697815 -9839444 + CT-rich Low_complexity Low_complexity 3 65 0 4 1673 1347 214 52 52 chr5 142697881 142697983 -9839276 + MTE2b LTR MaLR 1 113 -266 4 1673 306 0 0 0 chr5 142697983 142698017 -9839242 + (TC)n Simple_repeat Simple_repeat 1 34 0 4 1673 324 0 0 0 chr5 142698017 142698052 -9839207 + (CA)n Simple_repeat Simple_repeat 1 36 0 4 1673 1347 214 52 52 chr5 142698052 142698313 -9838946 + MTE2b LTR MaLR 114 363 -16 4 1673 1247 83 10 50 chr5 142698836 142699038 -9838221 + B2_Mm2 SINE B2 2 195 0 4 1673 442 268 32 0 chr5 142699194 142699317 -9837942 + B1F SINE Alu 1 127 -22 4 1673 499 205 83 18 chr5 142699357 142699526 -9837733 - Lx4B LINE L1 -2 7056 6877 4 1673 519 293 57 6 chr5 142699545 142699703 -9837556 + B3A SINE B2 2 167 -31 4 1673 2469 158 7 5 chr5 142699703 142700123 -9837136 + MTC LTR MaLR 1 421 0 4 1673 243 61 0 0 chr5 142700136 142700169 -9837090 + (TA)n Simple_repeat Simple_repeat 2 34 0 4 1673 327 49 0 0 chr5 142700275 142700316 -9836943 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 4 1673 419 253 11 0 chr5 142700392 142700483 -9836776 - B3 SINE B2 -78 138 47 4 1673 22 35 0 0 chr5 142700529 142700558 -9836701 + AT_rich Low_complexity Low_complexity 1 29 0 4 1673 672 135 0 0 chr5 142700642 142700753 -9836506 + (CA)n Simple_repeat Simple_repeat 2 112 0 4 1673 344 253 198 21 chr5 142700754 142700910 -9836349 - Lx7 LINE L1 -282 7414 7237 4 1673 1401 140 9 0 chr5 142700910 142701132 -9836127 - URR1B DNA MER1_type -1 224 1 4 1673 344 253 198 21 chr5 142701132 142701213 -9836046 - Lx7 LINE L1 -460 7236 7135 4 1673 525 302 24 75 chr5 142701529 142701783 -9835476 - Charlie7a DNA MER1_type -4 268 28 4 1673 577 224 27 13 chr5 142701973 142702122 -9835137 + RSINE1 SINE B4 2 152 -13 4 1673 267 305 10 69 chr5 142702166 142702268 -9834991 + B4A SINE B4 2 97 -195 4 1673 265 325 85 23 chr5 142702279 142702408 -9834851 + MLT1A1 LTR MaLR 269 405 -3 4 1673 2171 176 55 14 chr5 142702967 142703405 -9833854 + RMER6B LTR ERVK 1 456 -5 4 1673 516 304 118 22 chr5 142703806 142704035 -9833224 - ORR1E LTR MaLR -105 254 4 4 1673 289 367 66 9 chr5 142704182 142704410 -9832849 - L1ME2 LINE L1 -3 6161 5921 4 1673 231 287 28 9 chr5 142704695 142704804 -9832455 - L1_Mur3 LINE L1 -134 5746 5636 4 1673 1131 256 153 11 chr5 142705806 142706173 -9831086 - MTD LTR MaLR 0 419 1 4 1673 1902 98 18 34 chr5 142706367 142706426 -9830833 - ORR1A4 LTR MaLR -6 323 267 4 1673 1070 39 0 0 chr5 142706426 142706556 -9830703 - B1_Mus2 SINE Alu -17 130 1 4 1673 1902 98 18 34 chr5 142706556 142706824 -9830435 - ORR1A4 LTR MaLR -63 266 1 4 1673 971 153 171 0 chr5 142706824 142707036 -9830223 - MTD LTR MaLR -38 381 133 4 1673 759 244 104 112 chr5 142707038 142707403 -9829856 + Lx8 LINE L1 6172 6533 -940 4 1673 519 246 6 155 chr5 142707407 142707575 -9829684 - B1F SINE Alu -4 145 3 4 1673 369 291 74 27 chr5 142707575 142707617 -9829642 - ID SINE ID -140 84 45 4 1673 780 218 16 22 chr5 142708005 142708188 -9829071 + B3A SINE B2 1 182 -16 4 1673 546 275 104 5 chr5 142708367 142708568 -9828691 + ID_B1 SINE B4 3 223 -1 4 1673 633 201 6 22 chr5 142708574 142708752 -9828507 + GA-rich Low_complexity Low_complexity 3 177 0 4 1673 270 0 0 0 chr5 142709234 142709264 -9827995 + (A)n Simple_repeat Simple_repeat 1 30 0 4 1673 665 235 106 19 chr5 142709847 142710055 -9827204 - URR1A DNA MER1_type 0 226 1 4 1673 468 35 0 0 chr5 142710162 142710220 -9827039 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1673 2886 116 9 5 chr5 142710244 142710668 -9826591 + RLTR23 LTR ERV1 5 430 0 4 1673 542 340 6 6 chr5 142710677 142710840 -9826419 - B4A SINE B4 -129 163 1 4 1673 387 41 0 0 chr5 142710847 142710896 -9826363 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 4 1673 546 254 16 0 chr5 142710896 142711018 -9826241 - ID_B1 SINE B4 -10 214 91 4 1673 623 278 191 4 chr5 142711514 142711745 -9825514 + B4 SINE B4 11 284 -8 4 1673 219 289 0 0 chr5 142711768 142711851 -9825408 + (CA)n Simple_repeat Simple_repeat 1 83 0 4 1673 1649 238 71 43 chr5 142712128 142712637 -9824622 - RMER5 LTR ERV1 -9 525 3 4 1673 242 298 198 9 chr5 142712734 142712951 -9824308 - L1M4 LINE L1 -428 5756 5499 4 1673 367 200 106 125 chr5 142713033 142713193 -9824066 + B3A SINE B2 38 194 -4 4 1673 318 191 0 106 chr5 142713214 142713308 -9823951 + MT2B LTR ERVL 157 240 -361 4 1673 581 156 55 0 chr5 142713228 142713337 -9823922 + PB1D9 SINE Alu 6 120 0 4 1673 725 268 25 25 chr5 142713452 142713655 -9823604 + B4 SINE B4 90 292 0 4 1673 269 208 0 13 chr5 142714646 142714724 -9822535 + (ATTG)n Simple_repeat Simple_repeat 3 79 0 4 1673 547 307 34 17 chr5 142714815 142714994 -9822265 - B4A SINE B4 -86 206 25 4 1673 243 303 30 0 chr5 142715164 142715230 -9822029 + MurSatRep1 Unknown Unknown 229 296 -1841 4 1673 262 318 0 64 chr5 142715270 142715364 -9821895 - RSINE1 SINE B4 0 165 78 4 1673 384 22 0 0 chr5 142715609 142715654 -9821605 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1673 2158 181 215 4 chr5 142715669 142716163 -9821096 + RMER19B LTR ERVK 305 902 0 4 1673 241 216 67 13 chr5 142716192 142716267 -9820992 - B3 SINE B2 -19 197 119 4 1673 543 288 60 9 chr5 142716335 142716535 -9820724 - ORR1E LTR MaLR -170 204 1 4 1673 192 77 0 0 chr5 142716678 142716704 -9820555 + (TG)n Simple_repeat Simple_repeat 2 27 0 4 1673 550 214 3 20 chr5 142716719 142717022 -9820237 + (TG)n Simple_repeat Simple_repeat 1 297 0 4 1673 425 253 6 0 chr5 142717062 142717240 -9820019 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1673 282 182 0 68 chr5 142717261 142717320 -9819939 - RSINE1 SINE B4 -1 164 110 4 1673 487 328 84 55 chr5 142717370 142717755 -9819504 + MTE2a LTR MaLR 1 405 -14 4 1673 736 234 33 56 chr5 142717756 142717969 -9819290 - B4 SINE B4 -84 208 1 4 1673 322 282 115 40 chr5 142718318 142718466 -9818793 + RMER15 LTR ERVL 403 561 -14 4 1673 1546 35 16 2 chr5 142719499 142720154 -9817105 + ZP3AR Satellite Satellite 1 664 0 4 1673 227 329 110 0 chr5 142720119 142720192 -9817067 + ID4_ SINE ID 1 81 -2 4 1673 181 355 65 0 chr5 142720710 142720803 -9816456 + MIRm SINE MIR 40 138 -138 4 1673 621 247 119 12 chr5 142720865 142721033 -9816226 + ID_B1 SINE B4 39 224 0 4 1673 896 223 5 25 chr5 142721039 142721241 -9816018 + B3A SINE B2 1 198 0 4 1673 342 220 10 52 chr5 142721261 142721357 -9815902 - MTEa LTR MaLR 0 379 288 4 1673 2003 168 16 0 chr5 142721369 142721733 -9815526 + ORR1C1 LTR MaLR 5 374 -4 4 1673 6341 176 120 28 chr5 142721737 142721940 -9815319 + ORR1C1-int LTR MaLR 1 206 -1303 4 1673 1092 95 0 0 chr5 142721940 142722087 -9815172 + B1_Mus2 SINE Alu 1 147 0 4 1673 6708 175 120 28 chr5 142722087 142723264 -9813995 + ORR1C1-int LTR MaLR 207 1509 0 4 1673 2263 160 11 13 chr5 142723264 142723643 -9813616 + ORR1C1 LTR MaLR 1 378 0 4 1673 341 328 63 53 chr5 142723643 142723837 -9813422 - MTEa LTR MaLR -99 271 79 4 1673 385 340 58 91 chr5 142724299 142724661 -9812598 + L2a LINE L2 3073 3422 -4 4 1673 257 314 0 0 chr5 142724981 142725051 -9812208 - MLT1I LTR MaLR -10 401 332 4 1673 499 249 120 94 chr5 142725051 142725326 -9811933 + B4A SINE B4 1 282 -10 4 1673 183 235 0 0 chr5 142725360 142725411 -9811848 + (CA)n Simple_repeat Simple_repeat 2 52 0 4 1673 318 281 29 10 chr5 142725587 142725691 -9811568 - MIRm SINE MIR -14 262 157 5 1673 279 332 60 40 chr5 142725691 142725788 -9811471 - L2a LINE L2 -16 3410 3206 5 1673 1324 243 19 125 chr5 142725789 142726212 -9811047 + MTE2a LTR MaLR 2 379 0 5 1673 277 127 68 10 chr5 142726681 142726784 -9810475 + (TA)n Simple_repeat Simple_repeat 1 109 0 5 1673 327 221 0 0 chr5 142727756 142727824 -9809435 + BGLII_B LTR ERVK 1 68 -373 5 1673 1516 60 0 0 chr5 142727825 142728009 -9809250 + B2_Mm1t SINE B2 2 185 -8 5 1673 838 168 18 24 chr5 142728032 142728196 -9809063 + RLTR11A LTR ERVK 153 315 -213 5 1673 3287 20 5 15 chr5 142728196 142728420 -9808839 - MTA_Mm LTR MaLR 0 396 171 5 1673 1880 121 115 106 chr5 142728420 142728891 -9808368 + IAPLTR2_Mm LTR ERVK 1 475 0 5 1673 3287 20 5 15 chr5 142728891 142729066 -9808193 - MTA_Mm LTR MaLR -226 170 1 5 1673 1527 97 5 0 chr5 142729066 142729283 -9807976 + RLTR11A LTR ERVK 311 528 0 5 1673 927 260 45 72 chr5 142729482 142729902 -9807357 - MTE2a LTR MaLR -44 375 12 5 1673 433 211 164 45 chr5 142730794 142730928 -9806331 + MER20 DNA MER1_type 1 150 -69 5 1673 443 304 145 17 chr5 142731458 142731692 -9805567 + RMER15 LTR ERVL 311 574 -1 5 1673 830 235 156 19 chr5 142732518 142732774 -9804485 + B4A SINE B4 2 292 0 5 1673 594 202 0 0 chr5 142732774 142732952 -9804307 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1673 393 259 26 40 chr5 142733002 142733155 -9804104 - MLT1A1 LTR MaLR -12 396 279 5 1673 272 333 0 0 chr5 142733590 142733668 -9803591 + MLT1H2 LTR MaLR 61 138 -351 5 1673 441 253 102 62 chr5 142733669 142733846 -9803413 + MTE2a LTR MaLR 12 195 -224 5 1673 657 278 32 134 chr5 142733832 142734115 -9803144 + MTE2a LTR MaLR 123 376 -3 5 1673 370 276 158 6 chr5 142734790 142734954 -9802305 + B3A SINE B2 2 190 -8 5 1673 550 204 11 0 chr5 142734981 142735074 -9802185 + B3 SINE B2 2 95 -121 5 1673 1581 67 8 4 chr5 142734993 142735443 -9801816 + ZP3AR Satellite Satellite 1 451 0 5 1673 225 338 42 0 chr5 142735403 142735474 -9801785 + ID4 SINE ID 1 74 -9 5 1673 233 376 54 70 chr5 142735609 142735978 -9801281 - Charlie21a DNA MER1_type -721 492 130 5 1673 454 271 89 13 chr5 142735981 142736138 -9801121 + B4A SINE B4 122 290 -2 5 1673 554 75 0 12 chr5 142736543 142736624 -9800635 + (TG)n Simple_repeat Simple_repeat 2 81 0 5 1673 525 203 152 0 chr5 142736673 142736791 -9800468 + B1_Mur2 SINE Alu 1 136 -13 5 1673 457 229 8 8 chr5 142736800 142736932 -9800327 + G-rich Low_complexity Low_complexity 2 133 0 5 1674 267 293 0 12 chr5 142737520 142737603 -9799656 - RMER15 LTR ERVL -489 86 5 5 1674 455 262 32 32 chr5 142737602 142737728 -9799531 + MTE2a LTR MaLR 243 368 -11 5 1674 311 259 18 9 chr5 142737765 142737874 -9799385 + L1MB3 LINE L1 6066 6175 -8 5 1674 189 295 62 62 chr5 142738292 142738357 -9798902 - MIRc SINE MIR -112 156 92 5 1674 342 0 0 0 chr5 142738438 142738476 -9798783 + (TC)n Simple_repeat Simple_repeat 1 38 0 5 1674 357 24 0 0 chr5 142738476 142738517 -9798742 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1674 415 229 43 40 chr5 142738557 142738910 -9798349 + (TCTA)n Simple_repeat Simple_repeat 1 354 0 5 1674 287 356 167 25 chr5 142739071 142739310 -9797949 + BLACKJACK DNA AcHobo 192 464 -2480 5 1674 351 211 117 43 chr5 142739553 142739647 -9797612 + PB1D7 SINE Alu 19 119 -1 5 1674 954 90 0 0 chr5 142739649 142739783 -9797476 + (GGGGA)n Simple_repeat Simple_repeat 4 137 0 5 1674 645 291 104 35 chr5 142739834 142740122 -9797137 + BLACKJACK DNA AcHobo 782 1089 -1855 5 1674 1171 203 171 11 chr5 142740191 142740465 -9796794 - MTEb LTR MaLR -2 377 60 5 1674 1210 184 42 0 chr5 142740478 142740690 -9796569 - URR1B DNA MER1_type -4 221 1 5 1674 1031 306 86 21 chr5 142740802 142741220 -9796039 - MT2A LTR ERVL -87 446 2 5 1674 418 136 0 0 chr5 142741221 142741280 -9795979 - MTEa LTR MaLR -320 59 1 5 1674 505 248 191 45 chr5 142741445 142741665 -9795594 + B4A SINE B4 41 292 0 5 1674 904 292 28 14 chr5 142741727 142742012 -9795247 - MER57F LTR ERV1 -147 289 1 5 1674 564 311 123 34 chr5 142742051 142742377 -9794882 + BLACKJACK DNA AcHobo 1257 1611 -1333 5 1674 506 260 196 7 chr5 142742460 142742697 -9794562 - B4A SINE B4 -6 286 1 5 1674 2155 294 63 54 chr5 142742699 142743631 -9793628 + BLACKJACK DNA AcHobo 1678 2618 -326 5 1674 326 333 17 42 chr5 142743645 142743764 -9793495 + PB1D10 SINE Alu 1 116 -1 5 1674 595 136 9 35 chr5 142743758 142743872 -9793387 + ZP3AR Satellite Satellite 38 148 -64 5 1674 240 310 14 0 chr5 142743872 142743943 -9793316 + ID4_ SINE ID 1 72 -11 5 1674 279 261 195 47 chr5 142743955 142744212 -9793047 + BLACKJACK DNA AcHobo 2612 2906 -38 5 1674 249 290 90 57 chr5 142744508 142744632 -9792627 + PB1 SINE Alu 1 120 0 5 1674 1248 136 97 0 chr5 142745035 142745241 -9792018 + URR1A DNA MER1_type 1 226 0 5 1674 688 215 24 23 chr5 142745671 142745837 -9791422 - ORR1E LTR MaLR -226 168 1 5 1674 247 194 43 11 chr5 142746609 142746703 -9790556 + GA-rich Low_complexity Low_complexity 1 97 0 5 1674 226 364 165 12 chr5 142746748 142746772 -9790487 - B4A SINE B4 -58 234 205 5 1674 2352 132 59 37 chr5 142746772 142747180 -9790079 + MTC LTR MaLR 5 421 0 5 1674 226 364 165 12 chr5 142747180 142747319 -9789940 - B4A SINE B4 -88 204 47 5 1674 280 296 69 62 chr5 142747339 142747483 -9789776 - MLT1A0 LTR MaLR -188 177 33 5 1674 744 202 25 25 chr5 142747621 142747783 -9789476 + B4 SINE B4 131 292 0 5 1674 282 208 0 0 chr5 142747783 142747831 -9789428 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1674 414 249 0 34 chr5 142747836 142748011 -9789248 + (CATA)n Simple_repeat Simple_repeat 4 172 0 5 1674 561 268 188 28 chr5 142748957 142749207 -9788052 + B4A SINE B4 1 290 -2 5 1674 688 171 98 0 chr5 142749640 142749763 -9787496 + B1_Mus1 SINE Alu 9 143 -5 5 1674 226 292 0 0 chr5 142749909 142749957 -9787302 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1674 329 286 11 32 chr5 142749957 142750051 -9787208 - B4 SINE B4 -196 96 5 5 1674 301 298 83 93 chr5 142750066 142750423 -9786836 - MTEb LTR MaLR -4 375 16 5 1674 279 173 0 0 chr5 142750563 142750615 -9786644 + (TG)n Simple_repeat Simple_repeat 1 52 0 5 1674 829 307 17 17 chr5 142750621 142750909 -9786350 - B4 SINE B4 -4 288 1 5 1674 669 281 43 148 chr5 142750916 142751221 -9786038 - MLT2C1 LTR ERVL -108 289 17 5 1674 415 266 114 55 chr5 142751273 142751544 -9785715 + B4A SINE B4 2 288 -4 5 1674 3561 113 181 3 chr5 142751900 142752476 -9784783 + RLTR33 LTR ERVK 1 678 0 5 1674 1143 239 92 14 chr5 142752521 142752869 -9784390 - MTE2b LTR MaLR 0 379 5 5 1674 2088 144 63 73 chr5 142753655 142754053 -9783206 - ORR1B1 LTR MaLR 0 394 1 5 1674 687 275 139 42 chr5 142754054 142754291 -9782968 + ID_B1 SINE B4 2 261 -31 5 1674 789 224 91 0 chr5 142754291 142754456 -9782803 + B3A SINE B2 3 182 -16 5 1674 313 342 75 79 chr5 142754456 142754486 -9782773 + B4A SINE B4 262 291 -1 5 1674 21 0 0 0 chr5 142754490 142754511 -9782748 + AT_rich Low_complexity Low_complexity 1 21 0 5 1674 23 0 0 0 chr5 142754706 142754729 -9782530 + AT_rich Low_complexity Low_complexity 1 23 0 5 1674 458 226 94 0 chr5 142755079 142755185 -9782074 - ID_B1 SINE B4 -1 223 108 5 1674 306 227 171 32 chr5 142755185 142755197 -9782062 - B1_Mus1 SINE Alu 0 143 9 5 1674 291 183 87 43 chr5 142755417 142755527 -9781732 + B1F SINE Alu 9 149 0 5 1674 186 0 0 81 chr5 142755994 142756031 -9781228 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 5 1674 1306 114 23 4 chr5 142756033 142756327 -9780932 + ZP3AR Satellite Satellite 1 299 -1 5 1674 225 274 20 0 chr5 142756603 142756654 -9780605 + RMER15 LTR ERVL 507 558 -17 5 1674 246 176 0 0 chr5 142756801 142756852 -9780407 + (TG)n Simple_repeat Simple_repeat 2 52 0 5 1674 968 230 79 8 chr5 142756883 142757150 -9780109 - B4A SINE B4 -6 286 1 5 1674 526 290 155 34 chr5 142757548 142757794 -9779465 + B4A SINE B4 4 278 -14 5 1674 406 226 71 0 chr5 142757765 142757849 -9779410 + PB1D9 SINE Alu 12 101 -19 5 1674 258 257 14 14 chr5 142757854 142757925 -9779334 + GA-rich Low_complexity Low_complexity 3 73 0 5 1674 239 321 24 0 chr5 142757925 142758009 -9779250 + (CA)n Simple_repeat Simple_repeat 2 87 0 5 1674 807 261 16 11 chr5 142758531 142758717 -9778542 - ID_B1 SINE B4 -5 219 33 5 1674 714 228 185 0 chr5 142758786 142758970 -9778289 + ID_B1 SINE B4 2 219 -5 5 1674 206 156 22 0 chr5 142760056 142760101 -9777158 + GA-rich Low_complexity Low_complexity 1 46 0 5 1674 285 19 36 55 chr5 142760826 142760881 -9776378 + (TTTTTG)n Simple_repeat Simple_repeat 2 55 0 5 1674 549 248 43 0 chr5 142760883 142761024 -9776235 - B4A SINE B4 -68 224 78 5 1674 487 301 15 84 chr5 142761129 142761341 -9775918 - MTEa LTR MaLR 0 379 155 5 1674 658 265 10 44 chr5 142761915 142762120 -9775139 - B3A SINE B2 0 198 1 5 1674 1499 188 154 60 chr5 142762130 142762605 -9774654 - RMER4B LTR ERVK -2 464 1 5 1674 1008 162 134 20 chr5 142762613 142762815 -9774444 - B4 SINE B4 -66 226 2 5 1674 267 262 0 0 chr5 142762982 142763062 -9774197 + (TA)n Simple_repeat Simple_repeat 2 81 0 5 1674 404 235 50 10 chr5 142763080 142763179 -9774080 - ORR1E LTR MaLR 0 359 257 5 1674 1587 211 130 17 chr5 142763237 142763598 -9773661 + MTD LTR MaLR 18 419 0 5 1674 220 206 44 0 chr5 142763605 142763673 -9773586 + (TA)n Simple_repeat Simple_repeat 1 71 0 5 1674 214 226 32 16 chr5 142763786 142763849 -9773410 + (CATA)n Simple_repeat Simple_repeat 1 64 0 5 1674 505 304 111 15 chr5 142763872 142763955 -9773304 - L1MA4A LINE L1 -420 5883 5792 5 1674 363 44 0 0 chr5 142763955 142764000 -9773259 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1674 505 304 111 15 chr5 142764000 142764186 -9773073 - L1MA4A LINE L1 -512 5791 5589 5 1674 1987 138 53 88 chr5 142764706 142765102 -9772157 + ORR1B1 LTR MaLR 13 394 0 6 1674 996 250 24 40 chr5 142765153 142765403 -9771856 + B4A SINE B4 47 292 0 6 1674 269 227 45 134 chr5 142765499 142765611 -9771648 + PB1D10 SINE Alu 11 112 -5 6 1674 786 130 0 0 chr5 142765624 142765755 -9771504 + (GGGA)n Simple_repeat Simple_repeat 3 133 0 6 1674 214 50 0 48 chr5 142766414 142766456 -9770803 + (CCCCCA)n Simple_repeat Simple_repeat 3 42 0 6 1674 314 250 10 137 chr5 142766582 142766684 -9770575 + ID_B1 SINE B4 88 176 -48 6 1674 400 165 17 0 chr5 142766690 142766805 -9770454 + GA-rich Low_complexity Low_complexity 1 117 0 6 1674 621 181 0 0 chr5 142767071 142767248 -9770011 + CT-rich Low_complexity Low_complexity 2 178 0 6 1674 279 93 0 0 chr5 142767249 142767292 -9769967 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 6 1674 478 286 114 42 chr5 142767306 142767499 -9769760 - B4A SINE B4 -85 207 1 6 1674 291 287 0 54 chr5 142767499 142767591 -9769668 + L2b LINE L2 3283 3369 -6 6 1674 1028 243 69 25 chr5 142768067 142768310 -9768949 + B4A SINE B4 2 262 -30 6 1674 334 69 17 17 chr5 142768310 142768369 -9768890 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1674 1028 243 69 25 chr5 142768369 142768400 -9768859 + B4A SINE B4 263 288 -4 6 1674 319 301 48 0 chr5 142768404 142768550 -9768709 + (CA)n Simple_repeat Simple_repeat 2 154 0 6 1674 422 289 72 83 chr5 142768599 142768771 -9768488 + L1M5 LINE L1 4993 5170 -976 6 1674 405 255 68 10 chr5 142768771 142768874 -9768385 + PB1D7 SINE Alu 5 113 -7 6 1674 422 289 72 83 chr5 142768874 142768965 -9768294 + L1M5 LINE L1 5171 5253 -893 6 1674 847 172 0 27 chr5 142768972 142769121 -9768138 + B1_Mur3 SINE Alu 1 145 -4 6 1674 396 189 27 0 chr5 142769269 142769343 -9767916 - ID4 SINE ID -3 80 5 6 1674 1354 91 20 0 chr5 142769343 142769541 -9767718 - ZP3AR Satellite Satellite -6 206 5 6 1674 249 230 31 106 chr5 142769793 142769933 -9767326 + ORR1D2 LTR MaLR 229 362 -12 6 1674 686 182 53 8 chr5 142770148 142770281 -9766978 + B1_Mur1 SINE Alu 3 141 -8 6 1674 435 38 0 0 chr5 142770335 142770388 -9766871 + (TG)n Simple_repeat Simple_repeat 2 54 0 6 1674 836 294 21 0 chr5 142770396 142770583 -9766676 + B4 SINE B4 102 292 0 6 1674 846 182 0 0 chr5 142770583 142770795 -9766464 + (CATA)n Simple_repeat Simple_repeat 1 212 0 6 1674 951 252 28 36 chr5 142771633 142771880 -9765379 - B4 SINE B4 -11 281 37 6 1674 679 218 217 55 chr5 142771880 142772131 -9765128 - MTD LTR MaLR -30 389 116 6 1674 2136 118 15 15 chr5 142772131 142772458 -9764801 - ORR1B2 LTR MaLR 0 367 41 6 1674 262 95 0 0 chr5 142772460 142772502 -9764757 - MTD LTR MaLR -271 96 55 6 1674 648 104 0 57 chr5 142772506 142772628 -9764631 - ORR1B2 LTR MaLR -244 123 9 6 1674 247 296 22 22 chr5 142772683 142772773 -9764486 - MTD LTR MaLR -331 90 1 6 1674 1397 70 21 0 chr5 142773000 142773186 -9764073 + B2_Mm1t SINE B2 2 191 -2 6 1674 1341 63 103 0 chr5 142773207 142773363 -9763896 + B2_Mm1t SINE B2 1 156 -37 6 1674 345 24 0 0 chr5 142773363 142773405 -9763854 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 6 1674 1341 63 103 0 chr5 142773405 142773422 -9763837 + B2_Mm1t SINE B2 157 190 -3 6 1674 615 244 72 42 chr5 142773569 142773834 -9763425 - B4A SINE B4 -18 274 2 6 1674 1369 57 17 11 chr5 142773894 142774072 -9763187 + B2_Mm2 SINE B2 15 193 -2 6 1674 483 18 0 0 chr5 142774088 142774144 -9763115 + (TG)n Simple_repeat Simple_repeat 1 56 0 6 1674 428 217 19 9 chr5 142774155 142774262 -9762997 - B3A SINE B2 -90 108 1 6 1674 21 0 0 0 chr5 142774645 142774666 -9762593 + AT_rich Low_complexity Low_complexity 1 21 0 6 1674 239 306 23 186 chr5 142774747 142774924 -9762335 + MLT1N2 LTR MaLR 9 156 -406 6 1674 678 291 56 17 chr5 142774942 142775173 -9762086 - RMER15 LTR ERVL 0 575 336 6 1674 294 280 54 0 chr5 142775898 142775991 -9761268 + L1M5 LINE L1 5407 5504 -736 6 1674 548 314 0 0 chr5 142776100 142776256 -9761003 + B4 SINE B4 41 196 -96 6 1674 1338 250 88 11 chr5 142776455 142776807 -9760452 - MTE2b LTR MaLR 0 379 1 6 1674 246 128 0 0 chr5 142776823 142776862 -9760397 + (TTGG)n Simple_repeat Simple_repeat 4 42 0 6 1674 504 213 0 17 chr5 142776903 142777084 -9760175 + (TTGG)n Simple_repeat Simple_repeat 2 179 0 6 1674 592 320 81 5 chr5 142777135 142777358 -9759901 - B4A SINE B4 -40 252 13 6 1674 748 159 23 6 chr5 142777625 142777802 -9759457 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1674 471 192 40 11 chr5 142777820 142777994 -9759265 + (TG)n Simple_repeat Simple_repeat 2 180 0 6 1674 647 142 22 33 chr5 142778040 142778222 -9759037 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1674 440 147 39 26 chr5 142778234 142778388 -9758871 + (TG)n Simple_repeat Simple_repeat 1 156 0 6 1674 238 293 133 0 chr5 142778493 142778568 -9758691 - MLT1A0 LTR MaLR 0 365 281 6 1674 320 320 83 45 chr5 142779104 142779261 -9757998 - B4A SINE B4 -82 210 48 6 1674 758 268 21 0 chr5 142779483 142779677 -9757582 + B3A SINE B2 1 198 0 6 1674 475 211 8 68 chr5 142779801 142779918 -9757341 + B1F SINE Alu 36 145 -4 6 1674 318 106 0 0 chr5 142780437 142780484 -9756775 + (TCCC)n Simple_repeat Simple_repeat 4 50 0 6 1674 228 304 0 0 chr5 142780507 142780563 -9756696 - B4 SINE B4 -19 273 218 6 1674 916 284 65 31 chr5 142780572 142780925 -9756334 - Lx8 LINE L1 -136 7337 6973 6 1674 498 217 51 17 chr5 142780926 142781043 -9756216 - B4 SINE B4 -50 242 122 6 1674 368 271 42 8 chr5 142781523 142781642 -9755617 + MT2A LTR ERVL 1 123 -410 6 1674 997 203 138 40 chr5 142781537 142781864 -9755395 + MTE2b LTR MaLR 19 377 -2 6 1674 1861 152 73 3 chr5 142782222 142782538 -9754721 + ORR1A1 LTR MaLR 1 338 -8 6 1674 294 256 12 47 chr5 142782599 142782685 -9754574 - ID4_ SINE ID 0 83 1 6 1674 1103 71 7 0 chr5 142782685 142782840 -9754419 - ZP3AR Satellite Satellite -11 201 46 6 1674 1463 214 67 8 chr5 142782873 142783231 -9754028 - MTEa LTR MaLR 0 379 1 6 1674 1145 185 22 31 chr5 142783342 142783565 -9753694 - URR1B DNA MER1_type 0 225 5 6 1674 310 270 33 11 chr5 142783859 142783949 -9753310 - B3 SINE B2 -120 96 5 6 1674 246 289 0 62 chr5 142783961 142784042 -9753217 - ID_B1 SINE B4 -1 223 148 6 1674 501 156 0 0 chr5 142784102 142784198 -9753061 + (TG)n Simple_repeat Simple_repeat 1 96 0 6 1674 192 152 0 0 chr5 142784268 142784301 -9752958 + T-rich Low_complexity Low_complexity 1 33 0 6 1674 639 300 31 54 chr5 142784301 142784523 -9752736 - B4A SINE B4 -68 224 8 6 1674 22 0 0 0 chr5 142784528 142784550 -9752709 + AT_rich Low_complexity Low_complexity 1 22 0 6 1674 957 179 57 11 chr5 142784554 142784729 -9752530 + B3 SINE B2 13 195 -21 6 1674 432 262 0 0 chr5 142784740 142784820 -9752439 + PB1D7 SINE Alu 1 80 -40 6 1674 21 57 0 0 chr5 142784997 142785032 -9752227 + AT_rich Low_complexity Low_complexity 1 35 0 6 1674 1003 277 62 117 chr5 142785723 142786124 -9751135 + MTE2a LTR MaLR 1 379 0 6 1674 710 223 187 0 chr5 142786124 142786338 -9750921 + B4A SINE B4 37 290 -2 6 1674 2318 105 69 17 chr5 142786558 142786907 -9750352 + ORR1B2 LTR MaLR 1 367 0 6 1674 342 0 0 0 chr5 142786967 142787005 -9750254 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1674 591 293 18 120 chr5 142788383 142788608 -9748651 + B4A SINE B4 9 210 -82 6 1674 336 48 0 0 chr5 142788964 142789006 -9748253 + (CTTG)n Simple_repeat Simple_repeat 2 43 0 6 1674 1127 52 183 0 chr5 142789179 142789332 -9747927 + B2_Mm2 SINE B2 1 181 -14 6 1674 225 156 250 59 chr5 142789338 142789406 -9747853 + B4A SINE B4 212 292 0 6 1674 538 161 9 9 chr5 142789407 142789520 -9747739 + (CA)n Simple_repeat Simple_repeat 2 114 0 6 1674 896 259 118 52 chr5 142789590 142789895 -9747364 - MTEb LTR MaLR 0 379 55 6 1674 254 281 0 0 chr5 142789914 142789978 -9747281 - MTEb LTR MaLR -276 83 20 6 1674 618 207 0 8 chr5 142790511 142790628 -9746631 - PB1D10 SINE Alu -1 116 1 6 1674 269 293 106 68 chr5 142790634 142790671 -9746588 + B1F1 SINE Alu 12 144 -1 6 1674 373 256 33 11 chr5 142790671 142790762 -9746497 + ID_B1 SINE B4 128 220 -4 6 1674 423 277 36 58 chr5 142790815 142790953 -9746306 - B1F SINE Alu -5 144 10 6 1674 297 164 0 0 chr5 142791045 142791118 -9746141 + (TCTG)n Simple_repeat Simple_repeat 2 74 0 6 1674 288 149 0 0 chr5 142791212 142791259 -9746000 - RSINE1 SINE B4 -105 60 14 6 1674 633 279 182 55 chr5 142791355 142791811 -9745448 + MT2A LTR ERVL 12 525 -8 6 1674 525 170 30 10 chr5 142792282 142792383 -9744876 + B4A SINE B4 5 107 -185 6 1674 373 153 0 0 chr5 142792433 142792505 -9744754 + CT-rich Low_complexity Low_complexity 3 74 0 6 1674 367 221 153 9 chr5 142792507 142792632 -9744627 - B4 SINE B4 -149 143 4 6 1674 461 206 103 0 chr5 142792662 142792759 -9744500 - PB1D10 SINE Alu -10 107 1 6 1674 283 342 14 0 chr5 142793018 142793091 -9744168 + RSINE1 SINE B4 92 165 0 6 1674 225 261 0 0 chr5 142793091 142793160 -9744099 + (TA)n Simple_repeat Simple_repeat 2 70 0 6 1674 329 296 22 43 chr5 142793266 142793404 -9743855 - B4A SINE B4 -2 290 156 6 1674 979 79 2 2 chr5 142793528 142793666 -9743593 - B1_Mus1 SINE Alu -8 142 5 6 1674 387 271 107 40 chr5 142793666 142793816 -9743443 - L1M5 LINE L1 -302 5822 5659 6 1674 248 77 0 25 chr5 142794120 142794160 -9743099 + (TG)n Simple_repeat Simple_repeat 2 40 0 6 1674 276 321 52 36 chr5 142794163 142794403 -9742856 - RSINE1 SINE B4 -16 276 68 6 1674 594 320 57 22 chr5 142794551 142794778 -9742481 - MER2 DNA MER2_type 0 345 111 6 1674 306 0 0 0 chr5 142794793 142794827 -9742432 + (TG)n Simple_repeat Simple_repeat 1 34 0 6 1674 282 229 0 0 chr5 142794879 142794949 -9742310 + CT-rich Low_complexity Low_complexity 1 70 0 6 1674 1086 120 0 0 chr5 142795036 142795186 -9742073 + B1_Mur4 SINE Alu 1 150 0 6 1674 269 289 85 34 chr5 142795513 142795631 -9741628 - MIR SINE MIR -69 139 16 6 1674 1207 62 0 0 chr5 142796056 142796202 -9741057 + B1_Mus1 SINE Alu 1 146 -2 6 1674 25 51 0 0 chr5 142796202 142796241 -9741018 + AT_rich Low_complexity Low_complexity 1 39 0 7 1674 411 267 87 118 chr5 142796263 142796371 -9740888 + ORR1D2 LTR MaLR 51 149 -221 7 1674 378 0 0 0 chr5 142796371 142796413 -9740846 + (CA)n Simple_repeat Simple_repeat 2 43 0 7 1674 411 267 87 118 chr5 142796413 142796627 -9740632 + ORR1D2 LTR MaLR 150 363 -7 7 1674 298 47 47 0 chr5 142796901 142796944 -9740315 - MTE2b LTR MaLR 0 421 377 7 1674 393 179 63 35 chr5 142796982 142797156 -9740103 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 7 1674 371 21 21 0 chr5 142797178 142797226 -9740033 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 7 1674 714 285 57 109 chr5 142797947 142798404 -9738855 - BGLII_B LTR ERVK -6 435 3 7 1674 274 249 372 71 chr5 142798406 142798554 -9738705 - B4 SINE B4 -18 274 82 7 1674 665 182 271 0 chr5 142798587 142798757 -9738502 + B3 SINE B2 1 216 0 7 1674 1416 66 28 0 chr5 142798774 142798956 -9738303 - B2_Mm2 SINE B2 -8 187 1 7 1674 712 256 66 6 chr5 142798990 142799171 -9738088 - MTE2b LTR MaLR -183 196 5 7 1674 245 264 43 65 chr5 142799246 142799339 -9737920 + Tigger7 DNA MER2_type 5 95 -2396 7 1674 452 308 0 34 chr5 142799727 142799740 -9737519 + ID_B1 SINE B4 79 164 -60 7 1674 599 248 8 0 chr5 142799740 142799869 -9737390 + B1F SINE Alu 11 140 -9 7 1674 206 174 0 21 chr5 142800070 142800117 -9737142 + GA-rich Low_complexity Low_complexity 3 48 0 7 1674 388 302 8 25 chr5 142800841 142800960 -9736299 + B4A SINE B4 1 117 -175 7 1674 311 296 68 97 chr5 142800960 142801017 -9736242 + B3A SINE B2 1 171 -27 7 1674 288 0 0 0 chr5 142801027 142801059 -9736200 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1674 231 250 106 44 chr5 142801294 142801407 -9735852 + Lx8 LINE L1 7334 7453 -20 7 1674 997 255 69 35 chr5 142801459 142801776 -9735483 - ORR1E LTR MaLR -28 331 4 7 1674 228 67 0 0 chr5 142801869 142801899 -9735360 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1674 729 259 13 6 chr5 142802354 142802675 -9734584 + GA-rich Low_complexity Low_complexity 1 323 0 7 1674 2075 185 43 38 chr5 142802675 142803118 -9734141 + RLTR41 LTR ERV1 2 446 0 7 1674 189 0 0 0 chr5 142803119 142803140 -9734119 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 7 1674 544 288 7 21 chr5 142803140 142803282 -9733977 - RSINE1 SINE B4 -24 141 2 7 1674 762 264 69 0 chr5 142803550 142803724 -9733535 - ID_B1 SINE B4 -6 218 33 7 1674 700 268 112 30 chr5 142803855 142804105 -9733154 + B4A SINE B4 2 276 -16 7 1674 777 104 0 0 chr5 142804105 142804240 -9733019 + (TC)n Simple_repeat Simple_repeat 2 136 0 7 1674 700 268 112 30 chr5 142804240 142804258 -9733001 + B4A SINE B4 277 292 0 7 1674 667 220 43 0 chr5 142804617 142804758 -9732501 - B1_Mur1 SINE Alu -2 147 1 7 1674 934 233 142 47 chr5 142804915 142804997 -9732262 - RMER15 LTR ERVL 0 575 490 7 1674 1172 44 0 0 chr5 142804997 142805132 -9732127 + B1_Mus2 SINE Alu 3 137 -10 7 1674 648 38 0 0 chr5 142805132 142805211 -9732048 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 7 1674 934 233 142 47 chr5 142805211 142805402 -9731857 - RMER15 LTR ERVL -86 489 276 7 1674 531 229 26 18 chr5 142806239 142806378 -9730881 - MTD LTR MaLR -15 404 232 7 1674 1633 39 9 4 chr5 142806372 142806934 -9730325 - ZP3AR Satellite Satellite -9 564 1 7 1674 506 231 19 0 chr5 142807188 142807296 -9729963 + PB1D10 SINE Alu 1 110 -7 7 1674 512 297 5 15 chr5 142807306 142807506 -9729753 + B4A SINE B4 2 279 -13 7 1674 255 31 0 0 chr5 142807514 142807546 -9729713 + (CA)n Simple_repeat Simple_repeat 2 33 0 7 1674 192 40 0 0 chr5 142807645 142807670 -9729589 + (TAA)n Simple_repeat Simple_repeat 1 25 0 7 1674 211 289 0 0 chr5 142807736 142807788 -9729471 - MIR SINE MIR -110 152 101 7 1674 268 305 20 31 chr5 142808028 142808126 -9729133 - MIR SINE MIR -150 112 16 7 1674 1012 292 33 15 chr5 142808373 142808644 -9728615 - B4A SINE B4 -8 284 9 7 1674 276 254 70 0 chr5 142808660 142808774 -9728485 - L1MB5 LINE L1 -1 6173 6052 7 1674 1250 246 93 13 chr5 142809005 142809318 -9727941 + ORR1D2 LTR MaLR 30 367 -3 7 1674 803 270 40 123 chr5 142809322 142809747 -9727512 + MTE2a LTR MaLR 19 404 -15 7 1674 1256 27 0 7 chr5 142809784 142809931 -9727328 - B1_Mus2 SINE Alu -1 146 1 7 1674 414 0 0 0 chr5 142809977 142810023 -9727236 + (TG)n Simple_repeat Simple_repeat 1 46 0 7 1674 398 278 0 50 chr5 142810300 142810459 -9726800 + GA-rich Low_complexity Low_complexity 2 152 0 7 1674 353 241 175 18 chr5 142810487 142810601 -9726658 + ORR1E LTR MaLR 3 134 -225 7 1674 454 227 68 0 chr5 142810625 142810713 -9726546 + PB1D10 SINE Alu 3 96 -21 7 1674 1237 69 98 0 chr5 142810827 142811000 -9726259 + B2_Mm2 SINE B2 2 191 -4 7 1674 226 210 129 0 chr5 142811051 142811095 -9726164 - ORR1D2 LTR MaLR 0 370 319 7 1674 687 257 53 0 chr5 142811095 142811247 -9726012 + B3A SINE B2 1 160 -38 7 1674 342 67 0 0 chr5 142811268 142811313 -9725946 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1674 856 258 124 25 chr5 142811685 142811999 -9725260 - MTD LTR MaLR -64 355 11 7 1674 189 0 0 0 chr5 142812417 142812438 -9724821 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 7 1674 251 263 18 0 chr5 142812957 142813014 -9724245 + RMER15 LTR ERVL 363 420 -155 7 1674 396 200 0 0 chr5 142813087 142813222 -9724037 + (TG)n Simple_repeat Simple_repeat 1 135 0 7 1674 317 335 68 94 chr5 142813268 142813502 -9723757 + Lx8 LINE L1 7113 7340 -133 7 1674 658 211 0 60 chr5 142813505 142813656 -9723603 + B3A SINE B2 5 146 -52 7 1674 29 0 0 0 chr5 142813749 142813778 -9723481 + AT_rich Low_complexity Low_complexity 1 29 0 7 1674 242 337 10 20 chr5 142813911 142814011 -9723248 - ID_B1 SINE B4 -123 101 3 7 1674 332 202 170 0 chr5 142814438 142814532 -9722727 - RCHARR1 DNA MER1_type -98 876 767 7 1674 655 264 11 44 chr5 142814587 142814769 -9722490 - B3 SINE B2 -11 205 30 7 1674 183 205 231 0 chr5 142814894 142814972 -9722287 + L2c LINE L2 2974 3069 -318 7 1674 686 168 22 13 chr5 142814974 142815293 -9721966 + (CA)n Simple_repeat Simple_repeat 1 322 0 7 1674 218 211 0 19 chr5 142815332 142815385 -9721874 + B2_Mm2 SINE B2 34 85 -110 7 1674 539 238 9 0 chr5 142815348 142815453 -9721806 + RSINE1 SINE B4 50 155 -10 7 1674 531 207 69 0 chr5 142815480 142815596 -9721663 - B3 SINE B2 -90 126 3 7 1674 441 282 68 15 chr5 142815645 142815778 -9721481 - RSINE1 SINE B4 -18 147 8 7 1674 207 0 0 0 chr5 142815801 142815824 -9721435 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 7 1674 326 172 0 17 chr5 142815839 142815898 -9721361 - B2_Mm2 SINE B2 -91 104 47 7 1674 1271 102 11 0 chr5 142815991 142816168 -9721091 - B2_Mm1t SINE B2 -14 179 1 7 1674 346 200 112 112 chr5 142816628 142816767 -9720492 + B4A SINE B4 118 254 -38 7 1674 342 0 0 0 chr5 142816767 142816805 -9720454 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1674 346 200 112 112 chr5 142816805 142816834 -9720425 + B4A SINE B4 255 286 -6 7 1674 212 220 16 63 chr5 142816877 142816940 -9720319 - MIRc SINE MIR -45 223 164 7 1674 1663 176 41 53 chr5 142817195 142817610 -9719649 + RMER17C LTR ERVK 1 410 0 7 1674 1049 174 226 31 chr5 142817948 142818393 -9718866 + RMER17C-int LTR ERVK 1485 2016 -1222 7 1674 881 161 30 0 chr5 142818393 142818561 -9718698 + RMER17C-int LTR ERVK 2170 2342 -896 7 1674 2251 124 154 29 chr5 142818559 142819186 -9718073 + RMER17C-int LTR ERVK 2533 3238 0 7 1674 1735 141 63 10 chr5 142819189 142819610 -9717649 + RMER17C LTR ERVK 16 441 -517 7 1674 1120 140 6 11 chr5 142819889 142820070 -9717189 - B2_Mm2 SINE B2 -15 180 1 7 1674 1308 202 24 4 chr5 142820204 142820452 -9716807 - MTC LTR MaLR -63 358 106 7 1674 858 103 59 44 chr5 142820452 142820573 -9716686 + B2_Mm1t SINE B2 2 145 -48 7 1674 3362 21 23 5 chr5 142820573 142820962 -9716297 - MTA_Mm LTR MaLR 0 396 1 7 1674 858 95 38 45 chr5 142820962 142820996 -9716263 + B2_Mm1t SINE B2 146 179 -14 7 1674 350 130 33 26 chr5 142821062 142821175 -9716084 + B2_Mm2 SINE B2 47 195 0 7 1674 596 182 81 9 chr5 142821169 142821280 -9715979 - MTC LTR MaLR -301 120 2 7 1674 990 105 8 0 chr5 142821283 142821416 -9715843 + B1_Mur3 SINE Alu 4 137 -12 7 1674 812 73 407 0 chr5 142821418 142821568 -9715691 - RMER19A LTR ERVK -526 211 1 7 1674 1195 68 0 0 chr5 142821623 142821770 -9715489 - B1_Mus2 SINE Alu 0 147 1 7 1674 1613 130 64 83 chr5 142821776 142822214 -9715045 - MurERV4_19-int LTR ERVK -25 5755 5176 7 1674 374 282 127 41 chr5 142822256 142822523 -9714736 - B4 SINE B4 -4 288 3 7 1674 181 275 145 0 chr5 142822585 142822654 -9714605 + MIR SINE MIR 64 142 -66 7 1674 1169 82 0 0 chr5 142822846 142822992 -9714267 + B1_Mm SINE Alu 1 146 -1 7 1674 641 200 0 14 chr5 142822992 142823139 -9714120 + GA-rich Low_complexity Low_complexity 1 145 0 7 1674 227 163 0 39 chr5 142823141 142823192 -9714067 - tRNA-Ala-GCA tRNA tRNA -26 49 1 7 1674 282 146 0 0 chr5 142823150 142823198 -9714061 - ID4 SINE ID -35 48 1 7 1674 894 94 8 0 chr5 142823155 142823283 -9713976 - ZP3AR Satellite Satellite -74 138 10 7 1674 225 0 0 0 chr5 142823923 142823948 -9713311 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 1674 1165 163 10 15 chr5 142823950 142824155 -9713104 + RMER10B LTR ERVL 195 398 0 7 1674 898 142 10 112 chr5 142824155 142824361 -9712898 - URR1B DNA MER1_type -5 220 36 7 1674 1928 119 69 10 chr5 142824361 142824667 -9712592 + ORR1A4 LTR MaLR 1 324 -5 7 1674 856 269 47 91 chr5 142824728 142824805 -9712454 + MTE2a LTR MaLR 40 112 -267 7 1674 586 187 163 67 chr5 142824805 142824983 -9712276 - B3A SINE B2 -3 195 1 7 1674 856 269 47 91 chr5 142824983 142825245 -9712014 + MTE2a LTR MaLR 113 364 -15 7 1674 1623 182 148 40 chr5 142825289 142825531 -9711728 - RMER4B LTR ERVK 0 466 253 7 1674 369 131 0 0 chr5 142825531 142825592 -9711667 + (CAG)n Simple_repeat Simple_repeat 1 61 0 7 1674 1623 163 205 14 chr5 142825592 142825804 -9711455 - RMER4B LTR ERVK -333 252 22 7 1674 1042 125 52 37 chr5 142825804 142825995 -9711264 + B2_Mm2 SINE B2 2 195 0 7 1674 207 0 0 0 chr5 142825995 142826018 -9711241 + (GAAA)n Simple_repeat Simple_repeat 1 23 0 7 1674 1341 175 174 3 chr5 142826113 142826400 -9710859 - MTE2b LTR MaLR -43 336 1 7 1674 335 267 0 0 chr5 142826703 142826778 -9710481 - ORR1E LTR MaLR -255 104 30 7 1674 369 0 0 0 chr5 142826856 142826897 -9710362 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1674 658 292 119 24 chr5 142826898 142827235 -9710024 + L1MD2 LINE L1 5695 6063 -296 8 1674 2057 124 101 70 chr5 142827235 142827604 -9709655 + RLTR23 LTR ERV1 1 389 -41 8 1674 2225 122 40 18 chr5 142827604 142828005 -9709254 + RMER17C LTR ERVK 1 410 0 8 1674 2057 124 101 70 chr5 142828005 142828052 -9709207 + RLTR23 LTR ERV1 390 430 0 8 1674 458 195 12 0 chr5 142828110 142828192 -9709067 - ID4 SINE ID 0 83 1 8 1674 1458 65 0 5 chr5 142828192 142828393 -9708866 - ZP3AR Satellite Satellite -11 201 2 8 1674 711 225 27 27 chr5 142828419 142828602 -9708657 + RLTR12B LTR ERVK 47 229 -299 8 1674 277 266 114 9 chr5 142828604 142828718 -9708541 + MTE2b LTR MaLR 245 370 -9 8 1674 215 298 119 34 chr5 142829194 142829312 -9707947 - L3b LINE CR1 -260 222 95 8 1674 269 116 0 80 chr5 142829545 142829620 -9707639 + C-rich Low_complexity Low_complexity 2 70 0 8 1674 640 244 117 18 chr5 142830008 142830179 -9707080 + B3A SINE B2 1 188 -10 8 1674 462 237 0 10 chr5 142830209 142830307 -9706952 + B4A SINE B4 1 97 -195 8 1674 631 261 21 0 chr5 142830370 142830512 -9706747 + ID_B1 SINE B4 80 224 0 8 1674 904 208 117 20 chr5 142830632 142830828 -9706431 - B3 SINE B2 0 216 2 8 1674 339 78 0 0 chr5 142830828 142830879 -9706380 + (A)n Simple_repeat Simple_repeat 1 51 0 8 1674 228 283 16 16 chr5 142830879 142830940 -9706319 + B1F1 SINE Alu 1 61 -88 8 1674 483 320 81 47 chr5 142830941 142830984 -9706275 + B4A SINE B4 33 77 -215 8 1674 1549 37 26 5 chr5 142830984 142831173 -9706086 + B2_Mm2 SINE B2 3 195 0 8 1674 596 279 85 48 chr5 142831173 142831365 -9705894 + B4 SINE B4 78 276 -16 8 1674 252 0 0 0 chr5 142831374 142831402 -9705857 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1674 321 262 174 40 chr5 142831738 142831985 -9705274 + B4A SINE B4 1 280 -12 8 1674 1823 159 77 26 chr5 142832021 142832370 -9704889 + ORR1B2 LTR MaLR 1 367 0 8 1674 381 211 0 13 chr5 142832538 142832615 -9704644 + PB1D10 SINE Alu 34 109 -8 8 1674 256 292 0 0 chr5 142832680 142832752 -9704507 + RSINE1 SINE B4 85 156 -9 8 1674 342 0 0 0 chr5 142832759 142832797 -9704462 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1674 515 265 83 62 chr5 142832808 142833001 -9704258 + B4A SINE B4 12 208 -84 8 1674 1022 146 52 62 chr5 142833006 142833118 -9704141 - ORR1B2 LTR MaLR -9 358 241 8 1674 2117 151 6 3 chr5 142833118 142833476 -9703783 + RLTR15 LTR ERVK 1 359 0 8 1674 1022 153 118 76 chr5 142833476 142833651 -9703608 - ORR1B2 LTR MaLR -127 240 2 8 1674 383 327 0 9 chr5 142833651 142833743 -9703516 + B4 SINE B4 202 292 0 8 1674 344 167 0 14 chr5 142833813 142833886 -9703373 + (CA)n Simple_repeat Simple_repeat 1 72 0 8 1674 24 32 0 0 chr5 142834141 142834172 -9703087 + AT_rich Low_complexity Low_complexity 1 31 0 8 1674 635 229 8 0 chr5 142834340 142834462 -9702797 + B3A SINE B2 3 125 -73 8 1674 315 0 0 0 chr5 142834580 142834615 -9702644 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 8 1674 259 53 26 0 chr5 142834618 142834656 -9702603 - ORR1B2 LTR MaLR -207 160 122 8 1674 27 0 0 0 chr5 142834730 142834757 -9702502 + AT_rich Low_complexity Low_complexity 1 27 0 8 1674 397 291 0 26 chr5 142834774 142834887 -9702372 + PB1D7 SINE Alu 11 120 0 8 1674 241 134 82 57 chr5 142834892 142835050 -9702209 + GA-rich Low_complexity Low_complexity 3 164 0 8 1674 187 301 0 76 chr5 142835130 142835209 -9702050 + L2b LINE L2 3287 3359 -16 8 1674 657 306 29 15 chr5 142835849 142836055 -9701204 + MTD LTR MaLR 1 209 -210 8 1674 765 125 42 0 chr5 142836085 142836205 -9701054 + B1_Mus1 SINE Alu 10 134 -14 8 1674 254 304 80 88 chr5 142836205 142836218 -9701041 + B4 SINE B4 94 225 -67 8 1674 416 150 12 0 chr5 142836219 142836299 -9700960 + GA-rich Low_complexity Low_complexity 2 82 0 8 1674 702 228 59 45 chr5 142836301 142836522 -9700737 + MTD LTR MaLR 196 419 0 8 1674 180 158 0 0 chr5 142836564 142836602 -9700657 + (CAG)n Simple_repeat Simple_repeat 1 38 0 8 1674 236 210 12 12 chr5 142836673 142836837 -9700422 + (CAG)n Simple_repeat Simple_repeat 2 165 0 8 1674 589 228 41 0 chr5 142837011 142837134 -9700125 + ID_B1 SINE B4 87 214 -10 8 1674 449 248 80 29 chr5 142837134 142837148 -9700111 + B1F SINE Alu 6 149 0 8 1674 278 206 129 11 chr5 142837533 142837626 -9699633 + PB1D10 SINE Alu 1 104 -13 8 1674 577 277 106 139 chr5 142837652 142837924 -9699335 + B4A SINE B4 1 269 -23 8 1674 447 63 0 0 chr5 142837924 142837987 -9699272 + (CA)n Simple_repeat Simple_repeat 2 64 0 8 1674 577 277 106 139 chr5 142837987 142838016 -9699243 + B4A SINE B4 270 292 0 8 1674 742 194 20 20 chr5 142838117 142838264 -9698995 + B1_Mur1 SINE Alu 2 148 -1 8 1674 277 279 12 12 chr5 142838417 142838497 -9698762 + B4 SINE B4 4 83 -209 8 1674 241 284 30 0 chr5 142838510 142838577 -9698682 + B4 SINE B4 146 214 -78 8 1674 1432 60 5 0 chr5 142838623 142838808 -9698451 + B2_Mm1a SINE B2 2 187 -6 8 1674 186 43 0 0 chr5 142839246 142839269 -9697990 + (TTTCC)n Simple_repeat Simple_repeat 5 27 0 8 1674 599 144 210 8 chr5 142839272 142839391 -9697868 - B1_Mur4 SINE Alu -7 143 1 8 1674 787 267 106 31 chr5 142839517 142839772 -9697487 - B4 SINE B4 -18 274 1 8 1674 571 265 136 10 chr5 142839808 142840006 -9697253 - ID_B1 SINE B4 -1 223 1 8 1674 2482 194 26 7 chr5 142840218 142840681 -9696578 + RLTR19A LTR ERVK 25 496 0 8 1674 1238 70 6 0 chr5 142840832 142841003 -9696256 + B2_Mm2 SINE B2 1 172 -23 8 1674 367 297 21 14 chr5 142841174 142841314 -9695945 + B1F SINE Alu 1 141 -8 8 1674 436 214 12 0 chr5 142841328 142841412 -9695847 + B4A SINE B4 1 85 -207 8 1674 261 197 33 0 chr5 142841437 142841498 -9695761 + B4A SINE B4 139 201 -91 8 1674 541 237 0 0 chr5 142841822 142841919 -9695340 + RSINE1 SINE B4 48 144 -21 8 1674 315 0 0 0 chr5 142841928 142841963 -9695296 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1674 1232 27 0 0 chr5 142842090 142842237 -9695022 + B1_Mus2 SINE Alu 1 147 0 8 1674 364 238 24 12 chr5 142842657 142842742 -9694517 - PB1D10 SINE Alu -21 96 11 8 1674 322 281 77 10 chr5 142842658 142842762 -9694497 - ID_B1 SINE B4 -48 176 66 8 1674 379 293 173 0 chr5 142842805 142843013 -9694246 - L1MB3 LINE L1 -41 6142 5899 8 1674 240 111 22 22 chr5 142843024 142843070 -9694189 - B1F1 SINE Alu -93 56 11 8 1674 352 190 267 10 chr5 142844183 142844284 -9692975 - RSINE1 SINE B4 -36 129 3 8 1674 272 219 30 20 chr5 142844316 142844396 -9692863 + ID_B1 SINE B4 80 153 -71 8 1674 326 134 47 8 chr5 142844330 142844405 -9692854 + PB1D7 SINE Alu 6 59 -61 8 1674 613 236 28 14 chr5 142844595 142844703 -9692556 + RMER15 LTR ERVL 432 537 -38 8 1674 234 0 0 0 chr5 142844703 142844729 -9692530 + (TG)n Simple_repeat Simple_repeat 2 27 0 8 1674 613 236 28 14 chr5 142844729 142844762 -9692497 + RMER15 LTR ERVL 538 574 -1 8 1674 339 225 159 18 chr5 142845084 142845197 -9692062 - MLT1B LTR MaLR -220 170 42 8 1674 1137 181 130 49 chr5 142845200 142845507 -9691752 - IAPEY3_LTR LTR ERVK 0 332 1 8 1674 828 215 141 5 chr5 142845527 142845733 -9691526 + 7SLRNA srpRNA srpRNA 1 234 -80 8 1674 1946 142 31 0 chr5 142845976 142846299 -9690960 + MTC LTR MaLR 89 421 0 8 1674 358 276 57 0 chr5 142846534 142846639 -9690620 + B1F SINE Alu 31 141 -8 8 1674 1446 53 14 0 chr5 142846649 142846963 -9690296 + ZP3AR Satellite Satellite 1 318 -1 8 1674 400 189 14 0 chr5 142846963 142847037 -9690222 + ID4_ SINE ID 1 75 -8 8 1674 209 271 21 0 chr5 142847037 142847085 -9690174 + polypurine Low_complexity Low_complexity 2 50 0 8 1674 543 288 8 0 chr5 142849018 142849150 -9688109 + ID_B1 SINE B4 84 216 -8 8 1674 416 234 32 20 chr5 142849351 142849488 -9687771 + RSINE1 SINE B4 1 139 -26 8 1674 223 154 0 0 chr5 142849499 142849538 -9687721 + (ATG)n Simple_repeat Simple_repeat 2 40 0 8 1674 409 274 87 22 chr5 142849540 142849678 -9687581 - MLT2B1 LTR ERVL -48 519 373 8 1674 200 200 0 0 chr5 142849818 142849853 -9687406 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1674 24 0 0 0 chr5 142849853 142849877 -9687382 + AT_rich Low_complexity Low_complexity 1 24 0 8 1674 500 142 245 0 chr5 142850068 142850174 -9687085 + B1_Mm SINE Alu 16 147 0 8 1674 354 169 0 0 chr5 142850189 142850254 -9687005 + GA-rich Low_complexity Low_complexity 2 66 0 8 1674 492 220 26 35 chr5 142850254 142850367 -9686892 + Lx8 LINE L1 6700 6811 -662 8 1674 811 229 77 7 chr5 142850367 142850666 -9686593 + ORR1D2 LTR MaLR 4 349 -21 8 1674 858 241 160 11 chr5 142850674 142850955 -9686304 + Lx8 LINE L1 6806 7128 -345 8 1674 1650 151 75 3 chr5 142850992 142851298 -9685961 - ORR1C1 LTR MaLR -50 328 1 8 1674 653 178 96 0 chr5 142851425 142851560 -9685699 - B1_Mur1 SINE Alu 0 149 2 8 1674 344 242 95 0 chr5 142851598 142851693 -9685566 - MLT2B2 LTR ERVL -398 117 14 8 1674 1167 62 0 0 chr5 142851967 142852113 -9685146 - B1_Mus2 SINE Alu 0 147 2 8 1674 702 222 0 116 chr5 142852411 142852584 -9684675 + B4 SINE B4 26 178 -114 8 1674 410 233 40 17 chr5 142852630 142852805 -9684454 + (TA)n Simple_repeat Simple_repeat 1 179 0 8 1674 180 0 0 0 chr5 142852818 142852838 -9684421 + (TG)n Simple_repeat Simple_repeat 1 20 0 8 1674 638 247 36 6 chr5 142852847 142853014 -9684245 - MTE2b LTR MaLR -34 345 174 8 1674 260 200 49 16 chr5 142853166 142853227 -9684032 + B4A SINE B4 144 206 -86 8 1674 208 245 0 0 chr5 142853264 142853313 -9683946 + (CAA)n Simple_repeat Simple_repeat 3 51 0 8 1674 471 248 0 126 chr5 142853630 142853693 -9683566 + RSINE1 SINE B4 41 95 -70 8 1674 1133 68 0 0 chr5 142853693 142853839 -9683420 - B1_Mus2 SINE Alu 0 147 2 8 1674 471 248 0 126 chr5 142853839 142853918 -9683341 + RSINE1 SINE B4 96 165 0 8 1674 622 236 146 20 chr5 142854920 142855119 -9682140 - RMER15 LTR ERVL -58 517 294 9 1674 514 165 20 20 chr5 142855446 142855545 -9681714 + B4A SINE B4 1 99 -193 9 1674 336 289 8 26 chr5 142855545 142855563 -9681696 + B3A SINE B2 1 115 -83 9 1674 1199 211 181 35 chr5 142855591 142855808 -9681451 - MTD LTR MaLR 0 419 155 9 1674 2247 91 19 12 chr5 142855808 142856129 -9681130 - ORR1A2 LTR MaLR 0 327 5 9 1674 1199 211 181 35 chr5 142856129 142856164 -9681095 - MTD LTR MaLR -265 154 110 9 1674 440 210 62 42 chr5 142856164 142856308 -9680951 + B1_Mm SINE Alu 1 147 0 9 1674 1199 211 181 35 chr5 142856308 142856397 -9680862 - MTD LTR MaLR -310 109 27 9 1674 525 180 18 34 chr5 142856884 142857002 -9680257 + PB1D10 SINE Alu 9 117 0 9 1674 26 64 0 0 chr5 142857131 142857178 -9680081 + AT_rich Low_complexity Low_complexity 1 47 0 9 1674 245 269 60 0 chr5 142857191 142857258 -9680001 - RSINE1 SINE B4 -9 156 86 9 1674 399 296 98 0 chr5 142857419 142857551 -9679708 - B1F SINE Alu -2 147 3 9 1674 439 277 8 23 chr5 142857903 142858036 -9679223 + B1F SINE Alu 18 148 -1 9 1674 1300 65 35 0 chr5 142858048 142858075 -9679184 + ZP3AR Satellite Satellite 5 31 -181 9 1674 189 0 0 0 chr5 142858075 142858096 -9679163 + (C)n Simple_repeat Simple_repeat 1 21 0 9 1674 1313 86 35 0 chr5 142858096 142858335 -9678924 + ZP3AR Satellite Satellite 1 247 -3 9 1674 243 0 0 0 chr5 142858413 142858440 -9678819 + (TG)n Simple_repeat Simple_repeat 2 28 0 9 1674 777 288 24 0 chr5 142858681 142858886 -9678373 + B3 SINE B2 6 215 -1 9 1674 592 254 0 43 chr5 142858885 142859025 -9678234 - B3A SINE B2 -9 189 56 9 1674 391 142 52 26 chr5 142859029 142859269 -9677990 + (CA)n Simple_repeat Simple_repeat 1 246 0 9 1674 195 291 0 18 chr5 142859359 142859415 -9677844 - L2b LINE L2 -8 3367 3313 9 1674 640 271 73 0 chr5 142859635 142859812 -9677447 + B3A SINE B2 3 192 -6 9 1674 781 168 246 11 chr5 142859818 142859993 -9677266 - B3 SINE B2 0 216 1 9 1674 452 275 33 0 chr5 142860061 142860181 -9677078 - B1F SINE Alu -23 126 3 9 1674 389 272 23 23 chr5 142860327 142860455 -9676804 - B1F SINE Alu -1 148 21 9 1674 472 261 13 9 chr5 142860357 142860506 -9676753 - ID_B1 SINE B4 -26 198 50 9 1674 407 286 136 6 chr5 142860899 142861075 -9676184 + L1M5 LINE L1 5560 5758 -421 9 1674 29 0 0 0 chr5 142861178 142861207 -9676052 + GC_rich Low_complexity Low_complexity 1 29 0 9 1674 475 187 217 37 chr5 142861317 142861478 -9675781 + Lx8 LINE L1 7028 7217 -256 9 1674 718 236 77 27 chr5 142861841 142862063 -9675196 + B4A SINE B4 1 233 -59 9 1674 394 243 9 36 chr5 142862102 142862213 -9675046 - RSINE1 SINE B4 -55 110 3 9 1674 624 301 39 42 chr5 142862263 142862523 -9674736 - B4A SINE B4 -18 274 16 9 1674 348 239 235 17 chr5 142862550 142862665 -9674594 - ID_B1 SINE B4 -5 219 80 9 1674 271 264 124 26 chr5 142862793 142862906 -9674353 + MLT1N2 LTR MaLR 5 128 -467 9 1674 273 320 48 16 chr5 142863090 142863214 -9674045 + MLT1N2 LTR MaLR 417 544 -18 9 1674 725 249 42 28 chr5 142863335 142863550 -9673709 + ID_B1 SINE B4 1 218 -6 9 1674 596 216 159 33 chr5 142863753 142863935 -9673324 + B3 SINE B2 2 206 -10 9 1674 663 218 0 0 chr5 142863967 142864091 -9673168 + RSINE1 SINE B4 11 134 -31 9 1674 310 294 103 29 chr5 142864091 142864135 -9673124 + B2_Mm2 SINE B2 25 190 -5 9 1674 589 160 0 20 chr5 142864172 142864274 -9672985 + B3 SINE B2 1 100 -116 9 1674 394 274 124 0 chr5 142864861 142864974 -9672285 - B1F SINE Alu -11 138 12 9 1674 189 0 0 0 chr5 142865066 142865087 -9672172 + (TG)n Simple_repeat Simple_repeat 1 21 0 9 1674 468 0 0 0 chr5 142865087 142865138 -9672121 + (GA)n Simple_repeat Simple_repeat 1 52 0 9 1674 538 259 102 40 chr5 142865186 142865242 -9672017 - B4A SINE B4 -104 188 137 9 1674 180 0 0 0 chr5 142865242 142865262 -9671997 + (TCTCC)n Simple_repeat Simple_repeat 3 22 0 9 1674 538 259 102 40 chr5 142865262 142865382 -9671877 - B4A SINE B4 -156 136 1 9 1674 399 266 124 55 chr5 142865419 142865652 -9671607 + MLT1F1 LTR MaLR 233 516 -53 9 1674 319 270 71 1 chr5 142865664 142865770 -9671489 + PB1D10 SINE Alu 1 112 -5 9 1674 702 175 13 81 chr5 142865806 142865955 -9671304 - B1_Mur1 SINE Alu -7 142 4 9 1674 450 36 0 0 chr5 142865960 142866016 -9671243 + (CA)n Simple_repeat Simple_repeat 2 57 0 9 1674 269 318 0 0 chr5 142866022 142866110 -9671149 + PB1D10 SINE Alu 29 116 -1 9 1674 572 194 0 8 chr5 142866110 142866127 -9671132 + polypurine Low_complexity Low_complexity 1 17 0 9 1674 1065 140 0 0 chr5 142866127 142866305 -9670954 + (GGA)n Simple_repeat Simple_repeat 3 180 0 9 1674 572 194 0 8 chr5 142866305 142866417 -9670842 + GA-rich Low_complexity Low_complexity 18 129 0 9 1674 609 154 75 25 chr5 142866418 142866538 -9670721 + B3A SINE B2 1 126 -72 9 1674 369 0 0 0 chr5 142866556 142866597 -9670662 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1674 3134 139 26 73 chr5 142866860 142867474 -9669785 + RMER4B LTR ERVK 1 585 0 9 1674 308 284 0 0 chr5 142867912 142867986 -9669273 + ID4_ SINE ID 4 77 -6 9 1674 434 281 26 0 chr5 142868013 142868127 -9669132 + PB1D10 SINE Alu 1 117 0 9 1674 285 312 12 0 chr5 142868129 142868209 -9669050 + B4A SINE B4 1 81 -211 9 1674 299 376 14 7 chr5 142868242 142868384 -9668875 - RMER15 LTR ERVL -14 561 419 9 1675 402 257 28 0 chr5 142868789 142868898 -9668361 - PB1D10 SINE Alu -5 112 1 9 1675 820 196 6 0 chr5 142868898 142868971 -9668288 - ID SINE ID -143 81 8 9 1675 273 75 0 0 chr5 142869016 142869056 -9668203 + (TC)n Simple_repeat Simple_repeat 2 41 0 9 1675 230 248 65 65 chr5 142869333 142869488 -9667771 - L1M5 LINE L1 -301 5863 5709 9 1675 1468 45 14 0 chr5 142869576 142870072 -9667187 - ZP3AR Satellite Satellite -132 502 1 9 1675 292 276 66 9 chr5 142870089 142870195 -9667064 - PB1D10 SINE Alu -5 112 1 9 1675 548 302 156 25 chr5 142870249 142870275 -9666984 - B4A SINE B4 0 292 267 9 1675 183 80 0 0 chr5 142870275 142870300 -9666959 + (TATG)n Simple_repeat Simple_repeat 2 26 0 9 1675 548 302 156 25 chr5 142870300 142870511 -9666748 - B4A SINE B4 -26 266 24 9 1675 1362 57 6 0 chr5 142870523 142870699 -9666560 - B2_Mm1t SINE B2 -15 178 2 9 1675 430 264 86 27 chr5 142870699 142870886 -9666373 - L1MC LINE L1 -759 5585 5388 9 1675 1066 167 24 9 chr5 142870909 142871121 -9666138 - B3 SINE B2 0 216 2 9 1675 363 283 84 90 chr5 142871293 142871460 -9665799 - B4 SINE B4 -123 169 4 9 1675 195 114 0 0 chr5 142871527 142871562 -9665697 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 9 1675 895 213 14 45 chr5 142871621 142871842 -9665417 + ID_B1 SINE B4 2 215 -9 9 1675 270 0 89 0 chr5 142871848 142871893 -9665366 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 9 1675 508 101 22 0 chr5 142872339 142872428 -9664831 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 9 1675 344 358 6 57 chr5 142872434 142872591 -9664668 - B1F2 SINE Alu 0 149 1 9 1675 366 203 117 186 chr5 142872920 142872991 -9664268 + B1F SINE Alu 4 62 -87 9 1675 1166 68 0 0 chr5 142872991 142873139 -9664120 - B1_Mus1 SINE Alu 0 148 1 9 1675 366 203 117 186 chr5 142873139 142873212 -9664047 + B1F SINE Alu 63 138 -11 9 1675 299 235 24 12 chr5 142873251 142873333 -9663926 - L1MB2 LINE L1 -96 6087 6005 9 1675 918 212 56 0 chr5 142873376 142873574 -9663685 + ID_B1 SINE B4 1 209 -15 9 1675 607 255 140 9 chr5 142873596 142873818 -9663441 - L1MB2 LINE L1 -315 5856 5606 9 1675 751 246 143 44 chr5 142873858 142874129 -9663130 - B4 SINE B4 0 292 6 9 1675 344 304 0 13 chr5 142874133 142874243 -9663016 - B1F2 SINE Alu -3 117 10 9 1675 299 312 20 40 chr5 142874155 142874255 -9663004 - ID_B1 SINE B4 -50 174 77 9 1675 286 324 26 60 chr5 142874759 142874910 -9662349 + B1F SINE Alu 1 146 -3 9 1675 1371 57 17 0 chr5 142874948 142875125 -9662134 + B2_Mm2 SINE B2 2 181 -14 9 1675 180 0 0 0 chr5 142875126 142875146 -9662113 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9 1675 368 220 178 10 chr5 142875147 142875248 -9662011 + RSINE1 SINE B4 12 129 -36 9 1675 22 35 0 0 chr5 142875248 142875277 -9661982 + AT_rich Low_complexity Low_complexity 1 29 0 9 1675 461 261 84 0 chr5 142875357 142875476 -9661783 + ID_B1 SINE B4 87 215 -9 9 1675 1062 160 114 10 chr5 142875581 142875783 -9661476 + URR1A DNA MER1_type 2 224 -2 9 1675 505 261 49 54 chr5 142876191 142876414 -9660845 - B4A SINE B4 -68 224 3 9 1675 354 261 8 42 chr5 142876642 142876762 -9660497 + PB1D10 SINE Alu 1 116 -1 9 1675 376 246 77 31 chr5 142876787 142876917 -9660342 + B1F1 SINE Alu 14 149 0 9 1675 612 188 46 53 chr5 142876922 142877074 -9660185 + RSINE1 SINE B4 10 160 -5 9 1675 201 94 0 0 chr5 142877412 142877444 -9659815 + (CCCCG)n Simple_repeat Simple_repeat 4 35 0 9 1675 394 278 6 23 chr5 142877554 142877727 -9659532 + (CCG)n Simple_repeat Simple_repeat 1 170 0 9 1675 252 77 0 0 chr5 142878608 142878647 -9658612 + (TCTG)n Simple_repeat Simple_repeat 2 40 0 9 1675 315 49 0 0 chr5 142878647 142878688 -9658571 + (CA)n Simple_repeat Simple_repeat 1 41 0 9 1675 288 0 0 0 chr5 142879697 142879729 -9657530 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1675 351 0 0 0 chr5 142880031 142880070 -9657189 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 9 1675 735 278 66 30 chr5 142880287 142880558 -9656701 - B4A SINE B4 -11 281 1 9 1675 197 280 0 9 chr5 142880885 142880993 -9656266 + (TG)n Simple_repeat Simple_repeat 1 107 0 9 1675 561 328 57 32 chr5 142881002 142881285 -9655974 - B4A SINE B4 -1 291 2 9 1675 1085 71 14 11 chr5 142881906 142882087 -9655172 - ZP3AR Satellite Satellite -41 181 1 1 1675 285 300 100 0 chr5 142882097 142882207 -9655052 - PB1 SINE Alu -2 125 5 1 1675 548 249 94 98 chr5 142882785 142883104 -9654155 - B4A SINE B4 -2 290 2 1 1675 363 232 39 39 chr5 142883483 142883586 -9653673 - B1F1 SINE Alu -36 113 11 1 1675 236 309 66 80 chr5 142883489 142883640 -9653619 - B4A SINE B4 -96 196 48 1 1675 572 183 90 14 chr5 142884587 142884731 -9652528 + ID_B1 SINE B4 69 223 -1 1 1675 535 200 88 0 chr5 142884858 142884983 -9652276 - ID_B1 SINE B4 -3 221 86 1 1675 342 127 0 0 chr5 142885522 142885593 -9651666 + (CAGA)n Simple_repeat Simple_repeat 2 72 0 1 1675 307 265 0 0 chr5 142885608 142885676 -9651583 + ID_B1 SINE B4 156 223 -1 1 1675 236 309 17 76 chr5 142885746 142885865 -9651394 + PB1D10 SINE Alu 2 113 -4 1 1675 21 36 0 0 chr5 142885922 142885950 -9651309 + AT_rich Low_complexity Low_complexity 1 28 0 1 1675 369 141 0 0 chr5 142885950 142886021 -9651238 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1675 348 298 34 34 chr5 142886029 142886147 -9651112 - RSINE1 SINE B4 -5 160 43 1 1675 328 358 130 52 chr5 142886213 142886558 -9650701 - Charlie1 DNA MER1_type -260 2521 2150 1 1675 235 314 29 0 chr5 142886720 142886790 -9650469 - ID_B1 SINE B4 -1 223 152 1 1675 806 115 43 14 chr5 142886791 142886932 -9650327 + ZP3AR Satellite Satellite 43 187 -25 1 1675 1067 63 0 0 chr5 142887443 142887585 -9649674 + B1_Mus1 SINE Alu 6 147 -1 1 1675 432 0 0 0 chr5 142887614 142887662 -9649597 + (GA)n Simple_repeat Simple_repeat 1 48 0 1 1675 521 236 26 79 chr5 142888083 142888235 -9649024 - B4A SINE B4 -146 146 3 1 1675 551 202 29 0 chr5 142888433 142888537 -9648722 - PB1D10 SINE Alu -8 109 3 1 1675 334 209 30 0 chr5 142888865 142888932 -9648327 + MER58A DNA MER1_type 1 69 -155 1 1675 525 213 43 0 chr5 142888936 142889030 -9648229 + PB1D7 SINE Alu 4 101 -19 1 1675 333 0 0 0 chr5 142889328 142889365 -9647894 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1675 306 107 0 0 chr5 142889365 142889421 -9647838 + (CAGA)n Simple_repeat Simple_repeat 2 57 0 1 1675 295 313 34 34 chr5 142890196 142890315 -9646944 + B4 SINE B4 2 120 -172 1 1675 243 0 0 0 chr5 142890614 142890641 -9646618 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 1 1675 442 220 128 0 chr5 142890657 142890766 -9646493 - RSINE1 SINE B4 -29 136 14 1 1675 207 204 0 0 chr5 142890780 142890824 -9646435 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1675 393 302 38 53 chr5 142891299 142891432 -9645827 - ZP3AR Satellite Satellite -71 141 11 1 1675 365 196 146 21 chr5 142891403 142891499 -9645760 - PB1D10 SINE Alu -5 122 21 1 1675 316 203 40 0 chr5 142891779 142891853 -9645406 - PB1D10 SINE Alu -1 116 40 1 1675 212 59 29 0 chr5 142891954 142891988 -9645271 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 1 1675 418 243 89 9 chr5 142892632 142892744 -9644515 + B1F SINE Alu 29 149 0 1 1675 472 275 120 0 chr5 142893005 142893147 -9644112 - RSINE1 SINE B4 -4 161 3 1 1675 246 62 0 0 chr5 142893466 142893498 -9643761 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 1 1675 513 265 23 8 chr5 142893520 142893653 -9643606 - RSINE1 SINE B4 -28 137 3 1 1675 334 282 42 68 chr5 142893663 142893781 -9643478 - PB1D7 SINE Alu -5 115 1 1 1675 525 217 25 16 chr5 142893675 142893797 -9643462 - ID_B1 SINE B4 -37 187 65 1 1675 258 304 45 0 chr5 142894157 142894269 -9642990 + PB1D10 SINE Alu 1 117 0 1 1675 604 290 25 6 chr5 142894310 142894473 -9642786 - B4A SINE B4 -123 169 4 1 1675 260 243 65 46 chr5 142894703 142894811 -9642448 - PB1D9 SINE Alu -9 111 2 1 1675 474 262 34 56 chr5 142894811 142894898 -9642361 - B4A SINE B4 -209 83 1 1 1675 206 121 0 0 chr5 142894944 142894977 -9642282 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1 1675 625 159 43 17 chr5 142894978 142895093 -9642166 - PB1D9 SINE Alu -2 118 1 1 1675 547 168 131 0 chr5 142895137 142895244 -9642015 - RSINE1 SINE B4 -38 127 7 1 1675 706 190 7 28 chr5 142895246 142895387 -9641872 - B1F SINE Alu -9 140 3 1 1675 764 240 96 10 chr5 142895703 142895901 -9641358 - B3 SINE B2 0 216 2 1 1675 562 266 95 36 chr5 142895918 142896086 -9641173 - B4A SINE B4 -79 213 36 1 1675 235 203 33 17 chr5 142896156 142896216 -9641043 - RSINE1 SINE B4 -37 128 68 1 1675 648 239 181 0 chr5 142896694 142896882 -9640377 + ID_B1 SINE B4 2 223 -1 1 1675 371 277 64 116 chr5 142897154 142897387 -9639872 - L1MDa LINE L1 -4965 1668 1448 1 1675 437 313 60 0 chr5 142897427 142897561 -9639698 - RSINE1 SINE B4 -20 145 4 1 1675 296 221 79 13 chr5 142897561 142897649 -9639610 - ID4_ SINE ID -55 97 5 1 1675 226 307 61 9 chr5 142897649 142897764 -9639495 - L1MDa LINE L1 -5238 1395 1275 1 1675 248 283 0 0 chr5 142898216 142898269 -9638990 - ID4_ SINE ID 0 83 31 1 1675 354 274 35 49 chr5 142898348 142898490 -9638769 - B1F SINE Alu -8 141 2 1 1675 2514 191 44 19 chr5 142898533 142899061 -9638198 - RLTR20A LTR ERVK 0 541 1 1 1675 694 283 75 58 chr5 142899421 142899913 -9637346 + Lx7 LINE L1 5471 6021 -276 1 1675 645 239 3 28 chr5 142899976 142900161 -9637098 - ID_B1 SINE B4 -1 223 49 1 1675 322 284 39 19 chr5 142900405 142900509 -9636750 + B4A SINE B4 186 291 -1 1 1675 299 333 0 0 chr5 142901545 142901626 -9635633 - ID4_ SINE ID -2 81 1 1 1675 345 296 48 27 chr5 142901632 142901778 -9635481 - B1F SINE Alu 0 149 1 1 1675 294 243 142 81 chr5 142902157 142902195 -9635064 + ID_B1 SINE B4 52 98 -126 1 1675 434 178 36 90 chr5 142902195 142902306 -9634953 + B1_Mur3 SINE Alu 1 105 -44 1 1675 467 227 53 26 chr5 142902340 142902453 -9634806 - PB1D7 SINE Alu -4 116 1 1 1675 261 0 0 0 chr5 142902757 142902786 -9634473 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1675 469 225 120 40 chr5 142902791 142902916 -9634343 - RSINE1 SINE B4 -12 153 19 1 1675 538 232 380 28 chr5 142903282 142903495 -9633764 - B4A SINE B4 -4 288 1 1 1675 714 254 94 0 chr5 142903573 142903774 -9633485 + ID_B1 SINE B4 2 221 -3 1 1675 981 78 0 0 chr5 142904315 142904468 -9632791 + (GA)n Simple_repeat Simple_repeat 1 153 0 1 1675 294 87 0 0 chr5 142904468 142904513 -9632746 + (TG)n Simple_repeat Simple_repeat 2 47 0 1 1675 472 224 28 56 chr5 142904526 142904668 -9632591 - ID_B1 SINE B4 -38 186 49 1 1675 22 35 0 0 chr5 142904981 142905010 -9632249 + AT_rich Low_complexity Low_complexity 1 29 0 1 1675 743 224 31 19 chr5 142905010 142905169 -9632090 - RSINE1 SINE B4 -3 162 2 1 1675 410 246 192 26 chr5 142905209 142905367 -9631892 - ID_B1 SINE B4 0 224 48 1 1675 557 139 284 9 chr5 142905523 142905639 -9631620 + B1_Mur3 SINE Alu 2 149 0 1 1675 846 263 14 28 chr5 142905643 142905858 -9631401 + B3 SINE B2 1 212 -4 1 1675 607 176 14 75 chr5 142905890 142906037 -9631222 - B1F1 SINE Alu 0 149 12 1 1675 211 305 0 0 chr5 142906515 142906574 -9630685 + PB1D7 SINE Alu 36 94 -26 1 1675 360 0 0 0 chr5 142906596 142906636 -9630623 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1675 294 315 14 0 chr5 142906678 142906751 -9630508 - RSINE1 SINE B4 -16 149 76 1 1675 448 262 30 42 chr5 142906777 142906938 -9630321 - B4A SINE B4 -72 152 1 1 1675 261 0 0 0 chr5 142907254 142907283 -9629976 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1675 225 349 22 50 chr5 142907297 142907436 -9629823 - RSINE1 SINE B4 -21 144 10 1 1675 412 230 12 10 chr5 142907447 142907550 -9629709 + PB1D7 SINE Alu 16 119 -1 1 1675 413 234 100 27 chr5 142907762 142907872 -9629387 + PB1D7 SINE Alu 1 118 -2 1 1675 239 133 0 22 chr5 142908158 142908204 -9629055 + C-rich Low_complexity Low_complexity 3 47 0 1 1675 561 272 43 19 chr5 142908478 142908639 -9628620 + B3A SINE B2 1 165 -33 1 1675 236 200 0 10 chr5 142908663 142908759 -9628500 + CT-rich Low_complexity Low_complexity 2 96 0 1 1675 315 0 0 0 chr5 142908759 142908794 -9628465 + (CA)n Simple_repeat Simple_repeat 1 35 0 1 1675 697 295 122 4 chr5 142909602 142909677 -9627582 + B4 SINE B4 1 74 -218 1 1675 396 0 0 0 chr5 142909677 142909721 -9627538 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1675 697 295 122 4 chr5 142909721 142909900 -9627359 + B4 SINE B4 75 284 -8 1 1675 204 40 0 0 chr5 142910362 142910387 -9626872 + (TCTG)n Simple_repeat Simple_repeat 1 25 0 1 1675 201 250 21 0 chr5 142910453 142910501 -9626758 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1675 225 0 0 0 chr5 142910509 142910534 -9626725 + (TC)n Simple_repeat Simple_repeat 1 25 0 1 1675 225 0 0 0 chr5 142910534 142910558 -9626701 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1675 322 292 82 10 chr5 142910643 142910740 -9626519 + PB1D10 SINE Alu 1 104 -13 1 1675 200 122 24 0 chr5 142910743 142910784 -9626475 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1 1675 274 343 22 7 chr5 142911392 142911527 -9625732 + ID_B1 SINE B4 56 192 -32 1 1675 353 264 47 31 chr5 142911423 142911552 -9625707 + B1F SINE Alu 6 136 -13 1 1675 731 200 157 0 chr5 142911564 142911749 -9625510 + ID_B1 SINE B4 3 216 -8 1 1675 224 238 0 87 chr5 142912145 142912214 -9625045 - BC1_Mm scRNA scRNA -54 98 36 1 1675 3488 143 67 74 chr5 142912259 142912443 -9624816 + MTB_Mm-int LTR MaLR 485 658 -600 1 1675 1533 72 0 15 chr5 142912443 142912641 -9624618 + B2_Mm2 SINE B2 1 195 0 1 1675 3488 143 67 74 chr5 142912641 142913236 -9624023 + MTB_Mm-int LTR MaLR 659 1258 0 1 1675 2168 164 73 11 chr5 142913236 142913618 -9623641 + MTB_Mm LTR MaLR 1 406 -1 1 1675 828 227 135 23 chr5 142913619 142913948 -9623311 - ORR1C2 LTR MaLR -3 381 1 1 1675 342 0 0 0 chr5 142914849 142914887 -9622372 + (TATG)n Simple_repeat Simple_repeat 2 39 0 1 1675 281 173 0 19 chr5 142914899 142914952 -9622307 - RSINE1 SINE B4 -33 132 81 1 1675 578 211 32 0 chr5 142914998 142915121 -9622138 - B1F SINE Alu -1 148 22 1 1675 270 246 17 26 chr5 142915317 142915412 -9621847 + B1F SINE Alu 48 136 -14 1 1675 514 228 73 0 chr5 142915495 142915618 -9621641 + B1F1 SINE Alu 6 137 -12 1 1675 216 0 0 0 chr5 142915618 142915642 -9621617 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1675 456 172 208 24 chr5 142915715 142915840 -9621419 - B1_Mur2 SINE Alu -1 148 1 1 1675 446 224 224 0 chr5 142915881 142916060 -9621199 + ID_B1 SINE B4 4 222 -2 1 1675 352 298 29 37 chr5 142917109 142917244 -9620015 + B4A SINE B4 99 232 -60 1 1675 502 215 52 30 chr5 142917244 142917378 -9619881 + RSINE1 SINE B4 4 140 -25 1 1675 346 323 79 16 chr5 142917623 142917749 -9619510 + Tigger7 DNA MER2_type 5 138 -2353 1 1675 219 224 0 20 chr5 142917817 142917867 -9619392 + ID4 SINE ID 2 50 -33 1 1675 207 167 0 0 chr5 142918760 142918802 -9618457 + (CATA)n Simple_repeat Simple_repeat 1 42 0 1 1675 182 62 31 0 chr5 142918955 142918987 -9618272 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1675 262 250 24 24 chr5 142919916 142919998 -9617261 - HAL1 LINE L1 -746 1761 1680 1 1675 850 272 59 59 chr5 142920175 142920445 -9616814 - B4 SINE B4 -21 271 2 1 1675 231 244 0 0 chr5 142920684 142920729 -9616530 + ID_B1 SINE B4 144 188 -36 1 1675 585 76 0 0 chr5 142921055 142921134 -9616125 + (TG)n Simple_repeat Simple_repeat 1 79 0 1 1675 252 0 0 0 chr5 142921525 142921553 -9615706 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1 1675 344 231 115 0 chr5 142921967 142922071 -9615188 - ZP3AR Satellite Satellite -55 157 42 1 1675 458 244 62 16 chr5 142922126 142922255 -9615004 - B1F SINE Alu -14 135 1 1 1675 508 196 0 19 chr5 142922762 142922866 -9614393 - PB1D9 SINE Alu -2 118 17 1 1675 630 0 0 0 chr5 142922972 142923042 -9614217 + (CA)n Simple_repeat Simple_repeat 2 71 0 1 1675 371 244 0 0 chr5 142923119 142923201 -9614058 + PB1D10 SINE Alu 35 116 -1 1 1675 431 312 0 47 chr5 142923851 142923999 -9613260 - RSINE1 SINE B4 -21 144 4 1 1675 650 164 90 0 chr5 142925078 142925200 -9612059 - B1_Mus1 SINE Alu -6 142 10 1 1675 412 256 61 111 chr5 142925200 142925249 -9612010 - ID_B1 SINE B4 0 200 54 1 1675 410 278 0 44 chr5 142925283 142925396 -9611863 - PB1D10 SINE Alu 0 117 10 1 1675 405 258 57 48 chr5 142925587 142925828 -9611431 - B4A SINE B4 -12 280 1 1 1675 457 209 189 6 chr5 142926488 142926639 -9610620 - ID_B1 SINE B4 -2 222 48 1 1675 762 250 76 9 chr5 142926810 142927020 -9610239 - ID_B1 SINE B4 0 224 1 1 1675 623 230 0 0 chr5 142927027 142927140 -9610119 - PB1D10 SINE Alu -4 113 1 1 1675 235 155 47 37 chr5 142927725 142927832 -9609427 - Lx5 LINE L1 0 7050 6943 1 1675 337 136 18 64 chr5 142927842 142927952 -9609307 + CT-rich Low_complexity Low_complexity 3 107 0 1 1675 1655 42 0 0 chr5 142928274 142928466 -9608793 - B2_Mm1a SINE B2 0 193 2 1 1675 231 295 39 0 chr5 142928692 142928770 -9608489 - ID2 SINE ID -2 81 1 1 1675 286 259 0 96 chr5 142928737 142928831 -9608428 - ZP3AR Satellite Satellite -84 128 44 1 1675 422 311 8 11 chr5 142928838 142928978 -9608281 - ID_B1 SINE B4 -63 229 82 1 1675 188 100 25 0 chr5 142929357 142929397 -9607862 + (TG)n Simple_repeat Simple_repeat 1 41 0 1 1675 546 194 374 0 chr5 142930229 142930384 -9606875 - B3 SINE B2 0 216 4 1 1675 291 288 64 55 chr5 142930386 142930496 -9606763 - PB1D10 SINE Alu -1 116 6 1 1675 256 314 73 37 chr5 142930673 142930782 -9606477 + PB1 SINE Alu 7 119 -8 1 1675 372 216 51 10 chr5 142931035 142931133 -9606126 - ID_B1 SINE B4 -1 223 122 1 1675 269 319 34 34 chr5 142931133 142931147 -9606112 - B1F1 SINE Alu 0 144 33 1 1675 846 239 57 138 chr5 142931793 142932200 -9605059 - MTEb LTR MaLR -5 374 1 1 1675 391 211 16 81 chr5 142935836 142935960 -9601299 - PB1D10 SINE Alu 0 117 2 1 1675 201 146 0 0 chr5 142936563 142936611 -9600648 + (TCTG)n Simple_repeat Simple_repeat 2 49 0 1 1675 471 35 0 0 chr5 142936734 142936791 -9600468 + (CA)n Simple_repeat Simple_repeat 1 57 0 1 1675 21 0 0 0 chr5 142937940 142937961 -9599298 + AT_rich Low_complexity Low_complexity 1 21 0 1 1675 779 236 46 30 chr5 142938226 142938511 -9598748 - ORR1D1 LTR MaLR -63 311 2 1 1675 761 247 79 164 chr5 142938622 142938731 -9598528 - B4 SINE B4 -4 288 225 1 1675 439 296 62 55 chr5 142938731 142939003 -9598256 - B4 SINE B4 -17 275 2 1 1675 761 247 79 164 chr5 142939003 142939198 -9598061 - B4 SINE B4 -68 224 10 1 1675 274 198 151 47 chr5 142939505 142939611 -9597648 - ZP3AR Satellite Satellite -88 124 8 1 1675 501 319 14 0 chr5 142940543 142940681 -9596578 + RSINE1 SINE B4 16 155 -10 1 1675 844 88 64 0 chr5 142941238 142941363 -9595896 - B1_Mur4 SINE Alu -11 139 7 1 1675 511 212 71 152 chr5 142941363 142941449 -9595810 - ID_B1 SINE B4 -11 213 20 1 1675 361 227 91 0 chr5 142941726 142941814 -9595445 + B1F SINE Alu 37 132 -17 1 1675 459 171 18 0 chr5 142941873 142941967 -9595292 + PB1D7 SINE Alu 22 119 -1 1 1675 249 110 22 0 chr5 142942833 142942887 -9594372 - B2_Mm2 SINE B2 -95 121 64 1 1675 198 0 0 0 chr5 142942932 142942954 -9594305 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1675 1280 41 0 0 chr5 142942954 142943101 -9594158 - B1_Mm SINE Alu 0 147 1 1 1675 1348 73 11 27 chr5 142943106 142943289 -9593970 - B2_Mm1t SINE B2 -13 180 1 1 1675 229 291 0 71 chr5 142943494 142943507 -9593752 - BC1_Mm scRNA scRNA -73 79 1 1 1675 329 250 0 0 chr5 142943507 142943579 -9593680 - B4 SINE B4 -220 72 1 1 1675 183 80 0 0 chr5 142943928 142943953 -9593306 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1675 680 282 4 113 chr5 142944134 142944382 -9592877 + ID_B1 SINE B4 3 223 -1 1 1675 667 170 25 113 chr5 142945315 142945474 -9591785 + ID_B1 SINE B4 79 223 -1 1 1675 321 200 0 0 chr5 142945524 142945579 -9591680 + PB1D10 SINE Alu 47 101 -16 1 1675 1518 73 16 0 chr5 142945579 142945771 -9591488 - B2_Mm2 SINE B2 0 195 1 1 1675 287 253 0 46 chr5 142946584 142946671 -9590588 - ID4_ SINE ID 0 83 1 1 1675 1559 46 3 0 chr5 142946671 142947236 -9590023 - ZP3AR Satellite Satellite -11 566 1 1 1675 213 121 0 0 chr5 142947212 142947245 -9590014 - BC1_Mm scRNA scRNA -112 40 8 1 1675 466 250 59 0 chr5 142947266 142947401 -9589858 - PB1D9 SINE Alu -1 148 3 1 1675 1972 166 127 11 chr5 142947401 142947778 -9589481 - MTC LTR MaLR 0 421 1 1 1675 287 286 20 30 chr5 142947789 142947890 -9589369 - PB1D10 SINE Alu -5 112 13 1 1675 314 248 114 0 chr5 142948483 142948588 -9588671 + ID_B1 SINE B4 106 222 -2 1 1675 517 198 55 47 chr5 142948591 142948718 -9588541 + B1_Mur2 SINE Alu 1 128 -21 1 1675 594 202 146 8 chr5 142948726 142948869 -9588390 + B3 SINE B2 1 165 -33 1 1675 456 51 0 0 chr5 142948869 142948928 -9588331 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1675 458 309 82 53 chr5 142948960 142949203 -9588056 - B4 SINE B4 0 292 43 1 1675 396 313 168 20 chr5 142949217 142949419 -9587840 - B4A SINE B4 -60 232 1 1 1675 352 308 183 8 chr5 142949522 142949653 -9587606 + RSINE1 SINE B4 4 157 -8 1 1675 180 0 0 0 chr5 142951304 142951324 -9585935 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 1 1675 433 235 71 29 chr5 142951325 142951465 -9585794 - B1_Mur4 SINE Alu -1 149 4 1 1675 277 248 12 48 chr5 142951892 142952057 -9585202 + CT-rich Low_complexity Low_complexity 2 160 0 1 1675 525 178 29 11 chr5 142952118 142952253 -9585006 - URR1B DNA MER1_type -2 223 58 1 1675 403 159 14 0 chr5 142952307 142952376 -9584883 - ID4_ SINE ID -13 70 1 1 1675 289 248 7 32 chr5 142952402 142952505 -9584754 - PB1D7 SINE Alu -8 112 10 1 1675 1164 95 0 0 chr5 142953754 142953901 -9583358 + B1_Mus1 SINE Alu 2 148 0 1 1675 495 282 99 0 chr5 142953921 142954063 -9583196 - RSINE1 SINE B4 -6 159 4 1 1675 581 238 44 44 chr5 142954250 142954283 -9582976 + ID SINE ID 46 78 -146 1 1675 292 326 21 43 chr5 142954283 142954424 -9582835 + B1_Mus2 SINE Alu 3 140 -7 1 1675 949 197 60 5 chr5 142955286 142955485 -9581774 - B3 SINE B2 -5 211 2 1 1675 252 0 0 0 chr5 142955852 142955880 -9581379 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1675 22 0 0 0 chr5 142956092 142956114 -9581145 + AT_rich Low_complexity Low_complexity 1 22 0 1 1675 445 247 96 0 chr5 142956116 142956282 -9580977 - Lx7 LINE L1 0 7696 7515 1 1675 1653 223 175 18 chr5 142956311 142956767 -9580492 - Lx7 LINE L1 -284 7412 6885 1 1675 259 208 27 45 chr5 142956829 142956940 -9580319 + (CA)n Simple_repeat Simple_repeat 1 109 0 1 1675 2558 62 24 34 chr5 142957079 142957225 -9580034 - MTB LTR MaLR -22 378 230 1 1675 234 0 0 0 chr5 142957225 142957251 -9580008 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 1 1675 1276 106 44 0 chr5 142957251 142957431 -9579828 - B2_Mm2 SINE B2 -7 188 1 1 1675 2558 62 24 34 chr5 142957431 142957665 -9579594 - MTB LTR MaLR -171 229 2 1 1675 1052 29 14 0 chr5 142958047 142958185 -9579074 - B1_Mm SINE Alu -2 145 6 1 1675 240 250 0 17 chr5 142958083 142958201 -9579058 - ORR1B1-int LTR MaLR -755 754 639 1 1675 476 243 100 0 chr5 142958233 142958373 -9578886 + B3A SINE B2 1 154 -44 1 1675 432 247 51 10 chr5 142958392 142958490 -9578769 + RSINE1 SINE B4 53 154 -11 1 1675 477 293 25 63 chr5 142958820 142959135 -9578124 + B4A SINE B4 2 275 -17 1 1675 295 202 8 8 chr5 142959138 142959263 -9577996 + (CA)n Simple_repeat Simple_repeat 1 125 0 1 1675 440 246 30 30 chr5 142959827 142959976 -9577283 + B1F SINE Alu 1 149 0 1 1675 234 176 0 0 chr5 142959978 142960029 -9577230 + ID4 SINE ID 1 51 -32 1 1675 1549 28 8 16 chr5 142959989 142960613 -9576646 + ZP3AR Satellite Satellite 1 618 -1 1 1675 236 200 33 16 chr5 142960571 142960632 -9576627 + ID4_ SINE ID 1 62 -21 1 1675 216 143 0 0 chr5 142963739 142963781 -9573478 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1675 276 30 0 0 chr5 142963972 142964005 -9573254 + (TATG)n Simple_repeat Simple_repeat 3 35 0 1 1675 386 250 9 19 chr5 142964902 142965008 -9572251 + ID_B1 SINE B4 92 196 -28 1 1675 340 208 108 39 chr5 142965008 142965032 -9572227 + B1F2 SINE Alu 11 149 0 1 1675 417 302 116 11 chr5 142965362 142965543 -9571716 + B3 SINE B2 17 216 0 1 1675 470 278 0 27 chr5 142965557 142965668 -9571591 - PB1D10 SINE Alu -8 109 2 1 1675 229 303 68 76 chr5 142965986 142966118 -9571141 + RLTR26 LTR ERVK 440 570 -72 1 1675 410 289 195 0 chr5 142966158 142966317 -9570942 + B4 SINE B4 68 257 -35 1 1675 306 0 0 0 chr5 142966317 142966351 -9570908 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1675 369 0 0 0 chr5 142966357 142966398 -9570861 + (GA)n Simple_repeat Simple_repeat 2 42 0 1 1675 339 186 0 91 chr5 142966600 142966677 -9570582 - ID2 SINE ID -12 71 2 1 1675 183 246 0 0 chr5 142966699 142966756 -9570503 + (CGTG)n Simple_repeat Simple_repeat 2 58 0 1 1675 638 214 103 7 chr5 142966926 142967072 -9570187 + ZP3AR Satellite Satellite 42 201 -11 1 1675 346 281 12 0 chr5 142967072 142967154 -9570105 + ID4 SINE ID 1 83 0 1 1675 1636 36 0 5 chr5 142967165 142967359 -9569900 + B2_Mm2 SINE B2 2 194 -1 1 1675 1906 170 78 33 chr5 142967376 142967734 -9569525 + MTC LTR MaLR 1 382 -39 1 1675 3206 56 10 0 chr5 142967734 142968129 -9569130 + MTB LTR MaLR 1 399 -1 1 1675 1906 170 78 33 chr5 142968129 142968165 -9569094 + MTC LTR MaLR 383 413 -8 1 1675 622 276 6 30 chr5 142968328 142968496 -9568763 + RSINE1 SINE B4 2 165 0 1 1675 225 0 0 0 chr5 142968749 142968774 -9568485 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1 1675 292 156 8 34 chr5 142968789 142968855 -9568404 - B2_Mm2 SINE B2 -102 114 47 1 1675 1179 136 17 0 chr5 142968896 142969072 -9568187 - B2_Mm1t SINE B2 -14 179 1 1 1675 708 158 53 0 chr5 142969075 142969208 -9568051 - B1F SINE Alu -1 148 9 1 1675 758 156 23 0 chr5 142969560 142969688 -9567571 + URR1A DNA MER1_type 90 220 -6 1 1675 349 254 58 58 chr5 142969564 142969702 -9567557 - CYRA11_Mm Unknown Y-chromosome -313 304 167 1 1675 234 330 98 10 chr5 142969824 142970017 -9567242 - MLT1D LTR MaLR -289 216 7 1 1675 351 240 83 37 chr5 142971695 142971803 -9565456 - ID_B1 SINE B4 -1 223 111 1 1675 318 278 122 38 chr5 142971803 142971826 -9565433 - B1F SINE Alu -1 148 7 1 1675 207 0 0 0 chr5 142971965 142971988 -9565271 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1675 829 72 0 301 chr5 142971988 142972187 -9565072 - B1_Mus1 SINE Alu -9 139 1 1 1675 289 42 0 41 chr5 142972261 142972310 -9564949 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 1 1675 956 285 17 34 chr5 142972964 142973255 -9564004 - B4 SINE B4 -3 289 4 1 1675 285 51 0 0 chr5 142974234 142974273 -9562986 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1675 205 247 11 80 chr5 142974292 142974380 -9562879 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1675 1122 134 47 37 chr5 142974613 142974876 -9562383 + ZP3AR Satellite Satellite 1 265 0 1 1675 322 301 0 12 chr5 142974883 142974967 -9562292 + ID4_ SINE ID 1 83 0 1 1675 383 256 0 11 chr5 142975488 142975575 -9561684 - PB1D10 SINE Alu -1 116 31 1 1675 235 337 63 0 chr5 142976320 142976415 -9560844 - LTR90B LTR LTR -551 245 145 1 1675 320 253 20 50 chr5 142976522 142976622 -9560637 + B4A SINE B4 134 230 -62 1 1675 663 50 10 20 chr5 142976651 142976753 -9560506 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 1675 371 160 13 0 chr5 142977217 142977292 -9559967 + (TG)n Simple_repeat Simple_repeat 1 76 0 1 1675 633 201 0 3 chr5 142977349 142977717 -9559542 + (TG)n Simple_repeat Simple_repeat 1 366 0 1 1675 527 282 8 15 chr5 142977718 142977851 -9559408 - B4 SINE B4 -2 290 159 1 1675 1016 136 125 0 chr5 142978752 142978816 -9558443 - ID_B1 SINE B4 -16 208 145 1 1675 441 0 0 0 chr5 142978816 142978865 -9558394 + (CA)n Simple_repeat Simple_repeat 1 49 0 1 1675 1016 136 125 0 chr5 142978865 142978984 -9558275 - ID_B1 SINE B4 -80 144 4 1 1675 465 19 0 0 chr5 142979326 142979380 -9557879 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1675 475 302 60 7 chr5 142979385 142979603 -9557656 - ZP3AR Satellite Satellite -21 229 1 1 1675 451 194 36 36 chr5 142979611 142979723 -9557536 - B1F SINE Alu 0 149 38 1 1675 247 138 98 18 chr5 142980404 142980475 -9556784 + PB1D7 SINE Alu 67 148 -1 1 1675 889 171 7 20 chr5 142980604 142980753 -9556506 - B1_Mur2 SINE Alu 0 149 3 1 1675 582 249 137 5 chr5 142980773 142980963 -9556296 - B3 SINE B2 0 216 2 1 1675 352 210 36 24 chr5 142981138 142981221 -9556038 + RSINE1 SINE B4 82 165 0 1 1675 203 146 24 0 chr5 142981221 142981262 -9555997 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1675 552 30 0 0 chr5 142981504 142981570 -9555689 + (TC)n Simple_repeat Simple_repeat 2 67 0 1 1675 228 330 97 18 chr5 142981576 142981690 -9555569 - B4A SINE B4 -67 225 103 1 1675 534 43 0 0 chr5 142981886 142981955 -9555304 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1675 372 262 123 31 chr5 142983493 142983623 -9553636 + B1F SINE Alu 1 142 -7 1 1675 221 0 35 0 chr5 142983633 142983662 -9553597 + (GGGAGA)n Simple_repeat Simple_repeat 3 32 0 1 1675 429 20 0 0 chr5 142983722 142983772 -9553487 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1675 219 69 0 0 chr5 142984838 142984867 -9552392 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1675 266 379 0 6 chr5 142984891 142985069 -9552190 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 1 1675 279 327 10 0 chr5 142984964 142985068 -9552191 + (CA)n Simple_repeat Simple_repeat 2 106 0 1 1675 213 39 0 0 chr5 142985655 142985681 -9551578 + (CCCTG)n Simple_repeat Simple_repeat 3 28 0 1 1675 1285 119 16 0 chr5 142986595 142986780 -9550479 - B2_Mm1t SINE B2 -5 188 1 1 1675 465 248 62 21 chr5 142986826 142986970 -9550289 - RSINE1 SINE B4 -2 163 14 1 1675 904 219 71 28 chr5 142986975 142987187 -9550072 - B4 SINE B4 -71 221 1 1 1675 252 250 33 0 chr5 142987218 142987278 -9549981 - B4A SINE B4 -147 145 84 1 1675 516 218 64 0 chr5 142987365 142987475 -9549784 - PB1D10 SINE Alu 0 117 1 1 1675 557 268 0 55 chr5 142988356 142988502 -9548757 + RSINE1 SINE B4 28 165 0 1 1675 589 166 48 16 chr5 142988548 142988687 -9548572 + B1_Mur1 SINE Alu 1 149 0 1 1675 456 19 0 0 chr5 142988859 142988912 -9548347 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1675 662 197 0 17 chr5 142989650 142989769 -9547490 + PB1D10 SINE Alu 1 117 0 1 1675 241 321 0 134 chr5 142989771 142989868 -9547391 + MT2B LTR ERVL 155 238 -363 1 1675 432 322 0 42 chr5 142989781 142989901 -9547358 + B1_Mur1 SINE Alu 1 115 -34 1 1675 347 207 383 13 chr5 142989904 142990040 -9547219 + ID_B1 SINE B4 35 221 -3 1 1675 254 159 23 0 chr5 142990155 142990199 -9547060 - B1F1 SINE Alu -13 136 92 1 1675 223 276 0 33 chr5 142990270 142990330 -9546929 - B3 SINE B2 -158 58 1 1 1675 884 258 13 66 chr5 142990348 142990576 -9546683 - B3 SINE B2 0 216 1 1 1675 621 40 0 0 chr5 142990582 142990658 -9546601 + (TTTC)n Simple_repeat Simple_repeat 3 78 0 1 1675 805 238 14 56 chr5 142990659 142990873 -9546386 - B3 SINE B2 -4 212 8 1 1675 374 202 48 0 chr5 142991006 142991090 -9546169 + B4 SINE B4 1 88 -204 1 1675 237 234 42 99 chr5 142991090 142991121 -9546138 + BC1_Mm scRNA scRNA 1 112 -40 1 1675 785 147 94 14 chr5 142991121 142991259 -9546000 + B1_Mur2 SINE Alu 1 149 0 1 1675 237 234 42 99 chr5 142991259 142991285 -9545974 + BC1_Mm scRNA scRNA 113 134 -18 1 1675 430 284 0 25 chr5 142991324 142991443 -9545816 + B4 SINE B4 124 239 -53 1 1675 369 0 0 0 chr5 142991463 142991504 -9545755 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1675 472 181 0 24 chr5 142991576 142991661 -9545598 + B1F SINE Alu 2 84 -65 1 1675 216 0 0 0 chr5 142991666 142991690 -9545569 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 1 1675 1348 188 182 31 chr5 142991790 142992114 -9545145 - ORR1D1 LTR MaLR -1 373 1 1 1675 343 176 15 0 chr5 142992175 142992243 -9545016 - PB1D10 SINE Alu -5 112 44 1 1675 907 217 47 24 chr5 142992266 142992478 -9544781 - ID_B1 SINE B4 -7 217 1 1 1675 843 262 68 36 chr5 142992639 142992888 -9544371 + B4 SINE B4 36 292 0 1 1675 1314 34 6 0 chr5 142993460 142993638 -9543621 + ZP3AR Satellite Satellite 6 184 -28 1 1675 235 235 20 0 chr5 142993784 142993835 -9543424 - B1F SINE Alu -22 127 76 1 1675 873 212 51 51 chr5 142994722 142994936 -9542323 + B3 SINE B2 1 214 -2 1 1675 534 357 180 9 chr5 142994972 142995512 -9541747 + MLT1F-int LTR MaLR 621 1252 -237 1 1675 707 217 41 1 chr5 142995547 142995704 -9541555 + B3A SINE B2 1 159 -39 1 1675 423 0 0 0 chr5 142995704 142995751 -9541508 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1675 474 263 93 60 chr5 142995751 142995775 -9541484 + B2_Mm2 SINE B2 158 187 -8 1 1675 470 99 242 0 chr5 142995805 142995896 -9541363 + B1_Mur4 SINE Alu 38 150 0 1 1675 200 207 87 0 chr5 142995935 142996085 -9541174 + (CACTG)n Simple_repeat Simple_repeat 1 163 0 1 1675 462 288 61 14 chr5 142996332 142996480 -9540779 + RSINE1 SINE B4 6 160 -5 1 1675 448 289 137 55 chr5 142996548 142996731 -9540528 - B4A SINE B4 0 292 95 1 1675 5358 144 18 1 chr5 142997038 142997907 -9539352 + RMER19B LTR ERVK 1 884 -18 1 1675 499 261 259 22 chr5 142997905 142998159 -9539100 + MTEa LTR MaLR 15 333 -46 1 1675 371 320 102 21 chr5 142998159 142998468 -9538791 + MTE2a LTR MaLR 1 340 -39 1 1675 546 257 126 23 chr5 142998489 142998664 -9538595 - B3A SINE B2 -5 193 1 1 1675 819 227 263 16 chr5 142999144 142999448 -9537811 + MTE2b LTR MaLR 1 379 0 1 209 495 275 33 0 chr5 142999470 142999590 -9537669 - B1F SINE Alu -6 143 20 1 1676 417 269 33 60 chr5 142999590 142999620 -9537639 - ID_B1 SINE B4 -6 218 73 1 1676 1210 29 0 0 chr5 142999702 142999839 -9537420 - B1_Mm SINE Alu -8 139 3 1 1676 444 257 46 0 chr5 143000302 143000411 -9536848 - PB1D9 SINE Alu -6 114 1 1 1676 674 259 12 12 chr5 143000444 143000608 -9536651 - RSINE1 SINE B4 -1 164 1 2 1676 510 269 37 7 chr5 143000812 143000947 -9536312 + MER58A DNA MER1_type 74 212 -12 3 1676 247 256 23 23 chr5 143001425 143001513 -9535746 - PB1 SINE Alu -35 92 5 4 1676 336 301 0 0 chr5 143001659 143001742 -9535517 + ID4 SINE ID 1 83 0 5 1676 908 260 61 73 chr5 143006809 143007153 -9530106 - MTE2a LTR MaLR 0 379 40 6 1676 1052 32 0 0 chr5 143007322 143007448 -9529811 - B1_Mm SINE Alu -2 145 20 7 1676 298 192 0 0 chr5 143007473 143007525 -9529734 - MTE2a LTR MaLR -327 52 1 6 1676 228 135 0 0 chr5 143007830 143007867 -9529392 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1676 1213 61 0 0 chr5 143007867 143008014 -9529245 - B1_Mm SINE Alu 0 147 1 9 1676 413 319 35 63 chr5 143008020 143008037 -9529222 - B4A SINE B4 -46 246 171 1 1676 821 187 0 0 chr5 143008037 143008176 -9529083 - B1_Mur4 SINE Alu 0 150 12 1 1676 354 299 65 65 chr5 143008103 143008257 -9529002 - MT2B LTR ERVL -363 238 85 1 1676 413 319 35 63 chr5 143008176 143008194 -9529065 - B4A SINE B4 -46 170 78 1 1676 364 216 13 13 chr5 143008548 143008623 -9528636 - B3 SINE B2 -141 75 1 1 1676 425 298 137 42 chr5 143008709 143008972 -9528287 + B4 SINE B4 5 292 0 1 1676 1193 62 7 0 chr5 143009048 143009193 -9528066 + B1_Mus2 SINE Alu 2 147 0 1 1676 1644 26 0 30 chr5 143009195 143009394 -9527865 + B2_Mm1a SINE B2 1 193 0 1 1676 225 347 141 27 chr5 143009546 143009830 -9527429 + L2 LINE L2 2008 2322 -1097 1 1676 722 176 88 0 chr5 143009830 143009966 -9527293 + B1F SINE Alu 1 148 -1 1 1676 225 347 141 27 chr5 143009966 143010057 -9527202 + L2 LINE L2 2323 2426 -993 1 1676 545 234 63 42 chr5 143010085 143010228 -9527031 + RSINE1 SINE B4 3 148 -17 1 1676 282 56 0 0 chr5 143010653 143010689 -9526570 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 2 1676 1213 61 0 7 chr5 143010689 143010832 -9526427 - B1_Mus1 SINE Alu 0 148 6 2 1676 262 242 97 0 chr5 143011081 143011143 -9526116 - ID4 SINE ID -15 68 1 2 1676 180 176 0 0 chr5 143011180 143011214 -9526045 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1676 281 263 12 50 chr5 143011327 143011407 -9525852 - B4A SINE B4 -168 124 48 2 1676 564 149 46 18 chr5 143011573 143011682 -9525577 - B1_Mus1 SINE Alu -35 113 2 2 1676 365 248 7 104 chr5 143011682 143011708 -9525551 - MT2B LTR ERVL -337 264 143 2 1676 400 231 268 26 chr5 143012349 143012580 -9524679 + B4A SINE B4 4 290 -2 2 1676 1020 228 29 10 chr5 143012708 143012916 -9524343 + B3 SINE B2 1 212 -4 2 1676 261 0 0 0 chr5 143013291 143013320 -9523939 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 1676 460 189 109 36 chr5 143013610 143013720 -9523539 + RSINE1 SINE B4 12 129 -36 3 1676 497 240 50 0 chr5 143014057 143014178 -9523081 + ID_B1 SINE B4 90 216 -8 3 1676 1185 62 0 0 chr5 143014511 143014657 -9522602 + B1_Mus2 SINE Alu 2 147 0 3 1676 486 33 0 0 chr5 143014703 143014763 -9522496 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 1676 610 239 243 6 chr5 143014784 143014961 -9522298 - B4A SINE B4 -73 219 1 3 1676 504 229 61 48 chr5 143015607 143015754 -9521505 + B1F1 SINE Alu 1 149 0 3 1676 557 268 82 22 chr5 143015757 143015940 -9521319 + B3A SINE B2 1 194 -4 3 1676 630 95 11 0 chr5 143015974 143016069 -9521190 + ZP3AR Satellite Satellite 51 146 -66 3 1676 296 233 41 0 chr5 143016069 143016142 -9521117 + ID4_ SINE ID 1 76 -7 3 1676 342 67 0 0 chr5 143016152 143016197 -9521062 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1676 550 218 10 0 chr5 143016727 143016828 -9520431 + B1_Mur2 SINE Alu 3 104 -45 4 1676 510 150 0 12 chr5 143016990 143017071 -9520188 + ID4 SINE ID 3 82 -1 4 1676 358 281 97 69 chr5 143017701 143017846 -9519413 + B4A SINE B4 143 291 -1 4 1676 369 0 0 0 chr5 143018007 143018048 -9519211 + (CA)n Simple_repeat Simple_repeat 1 41 0 4 1676 462 221 32 0 chr5 143018058 143018153 -9519106 - PB1D7 SINE Alu -17 103 6 4 1676 489 255 42 54 chr5 143018185 143018351 -9518908 + RSINE1 SINE B4 2 165 0 4 1676 404 195 61 0 chr5 143018428 143018510 -9518749 + RSINE1 SINE B4 43 129 -36 4 1676 199 140 20 20 chr5 143018824 143018875 -9518384 + CT-rich Low_complexity Low_complexity 3 53 0 4 1676 1108 98 104 0 chr5 143018900 143019064 -9518195 - B2_Mm2 SINE B2 -14 181 1 4 1676 266 0 0 29 chr5 143020489 143020524 -9516735 + (TAA)n Simple_repeat Simple_repeat 3 36 0 4 1676 894 239 122 43 chr5 143020538 143020792 -9516467 + B4A SINE B4 1 274 -18 5 1676 210 37 0 0 chr5 143020804 143020831 -9516428 + (CA)n Simple_repeat Simple_repeat 1 27 0 5 1676 587 303 65 0 chr5 143021361 143021546 -9515713 - RMER30 DNA MER1_type -1 201 5 5 1676 408 364 52 0 chr5 143021717 143021871 -9515388 + RSINE1 SINE B4 2 163 -2 5 1676 884 254 14 0 chr5 143021892 143022105 -9515154 + B3 SINE B2 1 216 0 5 1676 395 242 68 68 chr5 143022177 143022310 -9514949 + ID_B1 SINE B4 92 224 0 5 1676 249 231 77 87 chr5 143022363 143022467 -9514792 + PB1 SINE Alu 22 124 -3 5 1676 1180 29 7 14 chr5 143022845 143022978 -9514281 + B1_Mus2 SINE Alu 3 136 -11 5 1676 369 58 0 0 chr5 143022978 143023030 -9514229 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 5 1676 265 164 31 62 chr5 143023214 143023279 -9513980 + B4A SINE B4 66 128 -164 5 1676 401 311 195 7 chr5 143023738 143023887 -9513372 + B4 SINE B4 109 285 -7 6 1676 516 202 153 0 chr5 143024255 143024379 -9512880 + ID_B1 SINE B4 82 224 0 6 1676 1089 67 7 0 chr5 143024384 143024519 -9512740 + B1_Mus2 SINE Alu 3 138 -9 6 1676 279 21 20 40 chr5 143024519 143024569 -9512690 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 6 1676 460 226 92 46 chr5 143024589 143024719 -9512540 + B1F SINE Alu 9 144 -5 6 1676 689 191 97 22 chr5 143024726 143024860 -9512399 + ID_B1 SINE B4 14 157 -67 6 1676 395 299 108 27 chr5 143024863 143025011 -9512248 + RSINE1 SINE B4 4 163 -2 6 1676 39 22 0 0 chr5 143025012 143025058 -9512201 + AT_rich Low_complexity Low_complexity 1 46 0 6 1676 29 28 0 0 chr5 143025070 143025106 -9512153 + AT_rich Low_complexity Low_complexity 1 36 0 6 1676 255 204 0 0 chr5 143025800 143025854 -9511405 + A-rich Low_complexity Low_complexity 1 54 0 6 1676 24 32 0 0 chr5 143027530 143027561 -9509698 + AT_rich Low_complexity Low_complexity 1 31 0 7 1676 955 281 28 28 chr5 143027575 143027864 -9509395 - ID_B1 SINE B4 -2 290 2 7 1676 183 154 128 0 chr5 143027866 143027905 -9509354 + L2 LINE L2 2786 2829 -590 7 1676 1143 112 142 44 chr5 143028076 143028129 -9509130 - URR1A DNA MER1_type -1 225 181 7 1676 2358 117 92 3 chr5 143028129 143028488 -9508771 + ORR1B1 LTR MaLR 4 394 0 7 1676 1143 112 142 44 chr5 143028488 143028639 -9508620 - URR1A DNA MER1_type -46 180 1 7 1676 234 167 41 20 chr5 143028680 143028729 -9508530 - L2b LINE L2 -13 3362 3313 7 1676 1243 119 11 0 chr5 143028893 143029070 -9508189 - B2_Mm1t SINE B2 -14 179 1 7 1676 356 301 86 0 chr5 143029325 143029418 -9507841 + MER58A DNA MER1_type 1 101 -123 7 1676 250 279 151 0 chr5 143029416 143029502 -9507757 + MER58A DNA MER1_type 16 114 -110 7 1676 281 247 81 12 chr5 143029731 143029817 -9507442 + ORR1E LTR MaLR 233 324 -35 7 1676 412 157 143 22 chr5 143029855 143029946 -9507313 - MLT1B LTR MaLR -283 107 6 7 1676 1410 88 5 35 chr5 143029971 143030171 -9507088 - B2_Mm2 SINE B2 0 195 2 8 1676 528 348 47 43 chr5 143030235 143030490 -9506769 + MLT1F LTR MaLR 9 264 -284 8 1676 326 61 20 0 chr5 143031254 143031303 -9505956 + (TTGG)n Simple_repeat Simple_repeat 3 52 0 8 1676 514 306 78 59 chr5 143031353 143031624 -9505635 - B4A SINE B4 -11 281 6 8 1676 2072 197 72 23 chr5 143031669 143032152 -9505107 - RLTR28 LTR ERVL 0 524 18 8 1676 1082 121 0 0 chr5 143032471 143032620 -9504639 + B1_Mur4 SINE Alu 2 150 0 8 1676 483 73 0 0 chr5 143032700 143032768 -9504491 + (GAAAA)n Simple_repeat Simple_repeat 2 69 0 8 1676 32 0 0 0 chr5 143033004 143033036 -9504223 + AT_rich Low_complexity Low_complexity 1 32 0 8 1676 536 274 99 77 chr5 143033070 143033343 -9503916 - RLTR41 LTR ERV1 0 446 168 8 1676 867 108 0 0 chr5 143033363 143033492 -9503767 + (CA)n Simple_repeat Simple_repeat 1 129 0 8 1676 608 307 16 38 chr5 143033795 143033978 -9503281 + B4A SINE B4 1 179 -113 9 1676 216 0 0 0 chr5 143034544 143034568 -9502691 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 9 1676 550 246 98 0 chr5 143034744 143034866 -9502393 + B1_Mur1 SINE Alu 1 134 -15 9 1676 201 156 0 0 chr5 143034867 143034899 -9502360 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 9 1676 234 328 0 79 chr5 143034899 143034986 -9502273 - RMER12 LTR ERVK -472 850 774 9 1676 2408 79 6 3 chr5 143034986 143035304 -9501955 + ORR1A2 LTR MaLR 1 319 -8 9 1676 1377 130 18 0 chr5 143035457 143035680 -9501579 - Lx5 LINE L1 -557 6493 6267 9 1676 333 196 26 9 chr5 143035679 143035792 -9501467 + Lx5 LINE L1 6936 7050 0 9 1676 247 384 0 0 chr5 143035922 143035995 -9501264 - B4A SINE B4 -4 288 216 9 1676 510 265 0 134 chr5 143036042 143036199 -9501060 - RSINE1 SINE B4 -28 137 2 9 1676 679 186 16 8 chr5 143036199 143036321 -9500938 - B4A SINE B4 -64 228 106 1 1676 714 268 12 18 chr5 143036379 143036462 -9500797 + ID SINE ID 1 82 -142 1 1676 460 270 8 34 chr5 143036462 143036581 -9500678 + PB1D10 SINE Alu 1 116 -1 1 1676 317 213 18 18 chr5 143036588 143036698 -9500561 + GA-rich Low_complexity Low_complexity 3 112 0 1 1676 2819 147 9 80 chr5 143037313 143037611 -9499648 + RLTR11A LTR ERVK 4 293 -235 1 1676 1586 41 0 15 chr5 143037611 143037807 -9499452 + B2_Mm2 SINE B2 2 194 -1 1 1676 2819 147 9 80 chr5 143037807 143038034 -9499225 + RLTR11A LTR ERVK 294 492 -36 1 1676 438 88 0 0 chr5 143038053 143038121 -9499138 + (TATG)n Simple_repeat Simple_repeat 1 68 0 1 1676 615 206 55 8 chr5 143038122 143038249 -9499010 - RSINE1 SINE B4 -31 134 2 1 1676 1290 164 9 14 chr5 143038311 143038528 -9498731 - B3 SINE B2 0 216 1 1 1676 252 0 0 0 chr5 143039288 143039316 -9497943 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1676 342 0 0 0 chr5 143039316 143039353 -9497906 + (GA)n Simple_repeat Simple_repeat 2 39 0 1 1676 346 215 37 37 chr5 143041085 143041167 -9496092 + PB1D10 SINE Alu 30 111 -6 1 1676 1207 56 0 0 chr5 143041206 143041348 -9495911 - B1_Mm SINE Alu -4 143 2 1 1676 326 214 12 0 chr5 143041423 143041507 -9495752 + GA-rich Low_complexity Low_complexity 3 87 0 1 1676 390 250 0 0 chr5 143041507 143041583 -9495676 + ID4 SINE ID 2 77 -6 1 1676 279 114 0 0 chr5 143041591 143041635 -9495624 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1676 469 239 112 6 chr5 143041652 143041812 -9495447 + L1MB3 LINE L1 5788 5964 -219 1 1676 324 0 0 0 chr5 143042291 143042327 -9494932 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1676 464 255 0 0 chr5 143042327 143042425 -9494834 - B3A SINE B2 -50 148 51 1 1676 271 234 61 61 chr5 143042529 143042643 -9494616 + PB1D10 SINE Alu 3 116 -1 1 1676 671 90 83 83 chr5 143042742 143042875 -9494384 - B2_Mm2 SINE B2 -61 134 2 1 1676 739 258 74 20 chr5 143042875 143043077 -9494182 + MTE2a LTR MaLR 78 290 -89 1 1676 951 227 38 10 chr5 143043109 143043318 -9493941 - B3 SINE B2 0 216 2 1 1676 342 0 0 0 chr5 143043410 143043448 -9493811 + (CA)n Simple_repeat Simple_repeat 2 39 0 1 1676 861 193 104 33 chr5 143044418 143044600 -9492659 + B3A SINE B2 4 198 0 1 1676 1038 279 70 0 chr5 143044648 143044920 -9492339 - B4 SINE B4 -1 291 1 1 1676 383 263 33 1 chr5 143044951 143045053 -9492206 + B4A SINE B4 1 104 -188 1 1676 230 132 0 50 chr5 143045055 143045095 -9492164 + B4 SINE B4 193 230 -62 1 1676 351 0 0 0 chr5 143045125 143045164 -9492095 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1676 441 0 0 0 chr5 143045164 143045212 -9492047 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1676 284 282 51 0 chr5 143045700 143045778 -9491481 + B4 SINE B4 84 165 -127 1 1676 496 189 0 62 chr5 143045710 143045806 -9491453 + PB1D10 SINE Alu 10 99 -18 1 1676 779 260 145 20 chr5 143045825 143046080 -9491179 + B4A SINE B4 4 290 -2 1 1676 443 277 0 35 chr5 143046242 143046358 -9490901 - RSINE1 SINE B4 0 165 54 1 1676 603 62 0 0 chr5 143046422 143046502 -9490757 + (TTGG)n Simple_repeat Simple_repeat 1 80 0 1 1676 573 234 109 0 chr5 143046502 143046624 -9490635 - B1_Mur1 SINE Alu -12 137 2 1 1676 1204 74 0 0 chr5 143046676 143046824 -9490435 - B1_Mus1 SINE Alu 0 148 1 1 1676 556 198 19 0 chr5 143046844 143046950 -9490309 + B1_Mm SINE Alu 27 134 -13 1 1676 939 85 0 0 chr5 143046951 143047081 -9490178 + (GAAA)n Simple_repeat Simple_repeat 1 130 0 1 1676 283 276 172 0 chr5 143047213 143047300 -9489959 + PB1D9 SINE Alu 2 103 -17 1 1676 262 182 15 15 chr5 143047302 143047369 -9489890 + GA-rich Low_complexity Low_complexity 2 68 0 1 1676 543 281 81 7 chr5 143047372 143047508 -9489751 + B3A SINE B2 33 178 -20 1 1676 272 217 43 14 chr5 143047553 143047623 -9489636 + (TATATG)n Simple_repeat Simple_repeat 2 73 0 1 1676 776 195 6 0 chr5 143047705 143047879 -9489380 + (TA)n Simple_repeat Simple_repeat 1 175 0 1 1676 180 0 0 0 chr5 143048071 143048091 -9489168 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1676 853 198 144 0 chr5 143048125 143048312 -9488947 + B3 SINE B2 2 215 -1 1 1676 218 182 15 29 chr5 143048314 143048337 -9488922 + A-rich Low_complexity Low_complexity 3 25 0 1 1676 1234 55 7 0 chr5 143048337 143048483 -9488776 + B1_Mus2 SINE Alu 1 147 0 1 1676 218 182 15 29 chr5 143048483 143048527 -9488732 + A-rich Low_complexity Low_complexity 26 69 0 1 1676 438 298 99 0 chr5 143048527 143048658 -9488601 + MTE2a LTR MaLR 1 144 -235 1 1676 387 237 32 0 chr5 143048668 143048761 -9488498 + MTE2a LTR MaLR 284 379 0 1 1676 315 0 0 0 chr5 143048937 143048972 -9488287 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1676 849 171 21 0 chr5 143048978 143049118 -9488141 - B3A SINE B2 -38 160 18 1 1676 370 241 44 53 chr5 143049241 143049355 -9487904 + PB1D7 SINE Alu 1 113 -7 1 1676 1487 59 0 11 chr5 143049475 143049663 -9487596 - B2_Mm2 SINE B2 -8 187 2 1 1676 251 212 0 12 chr5 143049775 143049856 -9487403 + (CA)n Simple_repeat Simple_repeat 1 80 0 1 1676 391 264 62 26 chr5 143049900 143050013 -9487246 - PB1D10 SINE Alu 0 117 1 1 1676 616 200 18 0 chr5 143050155 143050265 -9486994 - PB1D9 SINE Alu -6 114 3 1 1676 347 277 0 17 chr5 143050285 143050296 -9486963 + ID SINE ID 77 80 -144 1 1676 317 333 0 22 chr5 143050296 143050388 -9486871 + PB1D10 SINE Alu 1 90 -27 1 1676 189 0 0 0 chr5 143050564 143050585 -9486674 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1676 609 288 11 76 chr5 143051357 143051541 -9485718 - B3A SINE B2 0 198 27 1 1676 1285 27 0 13 chr5 143051556 143051705 -9485554 - B1_Mus2 SINE Alu 0 147 1 1 1676 598 215 32 65 chr5 143051883 143052037 -9485222 - RSINE1 SINE B4 -2 163 15 1 1676 390 268 195 7 chr5 143052176 143052330 -9484929 - URR1A DNA MER1_type -43 183 1 1 1676 1000 229 39 0 chr5 143052490 143052695 -9484564 + B3 SINE B2 1 213 -3 1 1676 306 309 21 0 chr5 143052719 143052813 -9484446 + B4A SINE B4 2 97 -195 1 1676 763 124 61 23 chr5 143053150 143053282 -9483977 + B1_Mur4 SINE Alu 12 148 -2 1 1676 1124 82 0 14 chr5 143053316 143053464 -9483795 + B1_Mm SINE Alu 2 147 0 1 1676 180 209 0 0 chr5 143053464 143053496 -9483763 + A-rich Low_complexity Low_complexity 11 42 0 1 1676 247 305 131 6 chr5 143053680 143053842 -9483417 + RSINE1 SINE B4 73 289 -3 1 1676 360 269 37 0 chr5 143053893 143053995 -9483264 - B1F1 SINE Alu -9 111 1 1 1676 468 183 0 0 chr5 143054008 143054101 -9483158 + CT-rich Low_complexity Low_complexity 2 94 0 1 1676 1171 49 21 0 chr5 143054140 143054284 -9482975 - B1_Mus1 SINE Alu 0 148 2 1 1676 638 260 32 133 chr5 143054284 143054472 -9482787 - B3A SINE B2 -1 197 5 1 1676 297 247 48 36 chr5 143054507 143054591 -9482668 - ID SINE ID -137 87 3 1 1676 501 266 133 0 chr5 143054623 143054685 -9482574 + ID_B1 SINE B4 14 94 -130 1 1676 277 281 139 50 chr5 143054685 143054786 -9482473 + B1_Mus2 SINE Alu 4 113 -34 1 1676 468 295 8 0 chr5 143055152 143055274 -9481985 + B4A SINE B4 43 165 -127 1 1676 339 309 103 0 chr5 143055298 143055434 -9481825 + RSINE1 SINE B4 12 161 -4 1 1676 441 0 0 0 chr5 143055460 143055509 -9481750 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 1 1676 507 33 0 0 chr5 143055510 143055571 -9481688 + (TCC)n Simple_repeat Simple_repeat 3 63 0 1 1676 726 228 0 0 chr5 143055574 143055701 -9481558 - B1_Mur4 SINE Alu -10 140 14 1 1676 549 154 19 37 chr5 143055704 143055812 -9481447 + PB1D9 SINE Alu 2 107 -13 1 1676 576 0 0 0 chr5 143055813 143055877 -9481382 + (GGA)n Simple_repeat Simple_repeat 1 64 0 1 1676 714 242 6 19 chr5 143055904 143056060 -9481199 + B3A SINE B2 30 183 -15 1 1676 886 282 32 29 chr5 143056378 143056659 -9480600 - B4A SINE B4 -8 284 3 1 1676 272 333 27 36 chr5 143056761 143056873 -9480386 + ID_B1 SINE B4 28 138 -86 1 1676 528 16 0 0 chr5 143056896 143056957 -9480302 + (TC)n Simple_repeat Simple_repeat 1 61 0 1 1676 607 152 0 9 chr5 143056966 143057072 -9480187 - B1_Mur3 SINE Alu -26 123 19 1 1676 690 233 62 6 chr5 143057092 143057269 -9479990 + B3A SINE B2 1 187 -11 1 1676 652 161 0 18 chr5 143057287 143057401 -9479858 + B1_Mur1 SINE Alu 37 148 -1 1 1676 378 332 99 70 chr5 143057792 143058035 -9479224 + B4A SINE B4 43 292 0 1 1676 299 267 0 0 chr5 143058785 143058845 -9478414 + B3 SINE B2 5 64 -152 1 1676 332 295 7 54 chr5 143058929 143059076 -9478183 + ID_B1 SINE B4 84 223 -1 1 1676 1323 75 30 4 chr5 143059046 143059393 -9477866 + ZP3AR Satellite Satellite 1 355 -1 1 1676 421 239 168 0 chr5 143060355 143060468 -9476791 + ID_B1 SINE B4 87 218 -6 1 1676 1559 51 1 9 chr5 143060588 143061103 -9476156 + ZP3AR Satellite Satellite 1 510 -1 1 1676 247 345 11 0 chr5 143061076 143061163 -9476096 + BC1_Mm scRNA scRNA 8 95 -57 1 1676 495 301 13 13 chr5 143061314 143061472 -9475787 - RSINE1 SINE B4 -5 160 3 1 1676 301 258 79 0 chr5 143061580 143061669 -9475590 - B4A SINE B4 -196 96 1 1 1676 228 276 0 0 chr5 143061685 143061728 -9475531 - BC1_Mm scRNA scRNA -65 87 45 1 1676 559 255 38 13 chr5 143061728 143061887 -9475372 + MTE2a LTR MaLR 1 163 -216 1 1676 545 214 17 0 chr5 143061907 143062024 -9475235 + B1_Mur1 SINE Alu 21 139 -10 2 1676 600 219 164 0 chr5 143062026 143062172 -9475087 + MTE2a LTR MaLR 210 379 0 1 1676 573 149 149 0 chr5 143062267 143062381 -9474878 + B1_Mur4 SINE Alu 1 131 -19 2 1676 333 0 0 0 chr5 143062425 143062462 -9474797 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1676 300 210 0 12 chr5 143062478 143062560 -9474699 + (CAGA)n Simple_repeat Simple_repeat 2 82 0 2 1676 227 346 95 29 chr5 143062560 143062697 -9474562 - RMER12 LTR ERVK -476 846 701 2 1676 1081 238 27 19 chr5 143062634 143062891 -9474368 - B4A SINE B4 -10 282 24 2 1676 309 209 0 0 chr5 143063005 143063072 -9474187 + ID_B1 SINE B4 107 173 -51 2 1676 288 264 0 11 chr5 143063072 143063097 -9474162 + PB1D10 SINE Alu 26 116 -1 2 1676 357 305 19 0 chr5 143063313 143063418 -9473841 + B4A SINE B4 158 264 -28 2 1676 638 290 0 18 chr5 143063496 143063661 -9473598 + RSINE1 SINE B4 2 163 -2 2 1676 347 160 103 39 chr5 143063805 143063883 -9473376 - RLTR11A2 LTR ERVK 0 527 445 2 1676 276 81 217 0 chr5 143063884 143063944 -9473315 - RLTR11A2 LTR ERVK -456 71 1 2 1676 238 306 14 14 chr5 143063957 143064030 -9473229 - PB1D10 SINE Alu -32 85 13 2 1676 583 265 34 40 chr5 143064177 143064354 -9472905 - ID_B1 SINE B4 -47 177 2 2 1676 333 118 0 0 chr5 143064365 143064416 -9472843 + (ACTG)n Simple_repeat Simple_repeat 4 54 0 2 1676 589 164 16 54 chr5 143064607 143064736 -9472523 + RSINE1 SINE B4 4 127 -38 2 1676 1314 78 0 0 chr5 143064805 143064985 -9472274 + (CA)n Simple_repeat Simple_repeat 1 180 0 2 1676 336 102 0 0 chr5 143064985 143065034 -9472225 + (CACG)n Simple_repeat Simple_repeat 3 51 0 2 1676 454 283 22 7 chr5 143065737 143065876 -9471383 + B1F SINE Alu 1 141 -8 2 1676 601 76 143 15 chr5 143065888 143065917 -9471342 + ZP3AR Satellite Satellite 43 70 -142 2 1676 4210 142 57 23 chr5 143065917 143066686 -9470573 + Lx LINE L1 5860 6654 0 2 1676 601 76 143 15 chr5 143066686 143066789 -9470470 + ZP3AR Satellite Satellite 71 192 -20 2 1676 216 86 0 0 chr5 143066884 143066919 -9470340 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 2 1676 402 21 0 0 chr5 143066919 143066966 -9470293 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 2 1676 329 305 105 0 chr5 143067522 143067627 -9469632 + ID_B1 SINE B4 86 201 -23 2 1676 1256 115 7 3 chr5 143067711 143068015 -9469244 + (TAGA)n Simple_repeat Simple_repeat 1 304 0 2 1676 511 266 16 0 chr5 143068021 143068145 -9469114 + ID_B1 SINE B4 91 216 -8 2 1676 824 252 62 25 chr5 143068149 143068389 -9468870 + B4A SINE B4 2 250 -42 2 1676 317 200 36 9 chr5 143068416 143068527 -9468732 + GA-rich Low_complexity Low_complexity 1 114 0 2 1676 189 0 0 0 chr5 143068568 143068589 -9468670 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 2 1676 280 239 98 150 chr5 143069157 143069290 -9467969 - ID_B1 SINE B4 -9 215 90 2 1676 269 331 41 0 chr5 143069600 143069721 -9467538 + RMER15 LTR ERVL 406 531 -44 2 1676 509 296 21 26 chr5 143069864 143070055 -9467204 + ORR1E LTR MaLR 3 192 -167 2 1676 1475 46 0 49 chr5 143070164 143070369 -9466890 + B2_Mm2 SINE B2 1 195 0 2 1676 220 193 35 17 chr5 143070371 143070429 -9466830 + B1_Mus2 SINE Alu 89 147 0 2 1676 420 274 21 62 chr5 143070461 143070605 -9466654 + B3A SINE B2 59 196 -2 2 1676 1019 270 10 49 chr5 143070617 143070905 -9466354 + B4 SINE B4 2 278 -14 2 1676 282 164 0 0 chr5 143070931 143070986 -9466273 + (CA)n Simple_repeat Simple_repeat 1 55 0 2 1676 378 129 0 0 chr5 143071034 143071096 -9466163 + (CA)n Simple_repeat Simple_repeat 1 62 0 2 1676 426 175 0 0 chr5 143071145 143071225 -9466034 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 1676 237 196 0 0 chr5 143071284 143071335 -9465924 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 1676 411 149 0 0 chr5 143071379 143071453 -9465806 + (CA)n Simple_repeat Simple_repeat 1 74 0 2 1676 324 102 0 0 chr5 143071502 143071551 -9465708 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 1676 405 0 0 0 chr5 143071609 143071654 -9465605 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 1676 301 252 156 25 chr5 143071939 143072061 -9465198 + B1F SINE Alu 11 148 -1 2 1676 1412 69 21 0 chr5 143072062 143072251 -9465008 + B2_Mm2 SINE B2 1 193 -2 2 1676 28 0 0 0 chr5 143072257 143072285 -9464974 + AT_rich Low_complexity Low_complexity 1 28 0 2 1676 935 288 7 22 chr5 143072404 143072677 -9464582 - B4 SINE B4 -5 287 19 2 1676 458 292 144 60 chr5 143072698 143072982 -9464277 + MTD LTR MaLR 24 331 -88 2 1676 506 226 36 72 chr5 143073069 143073207 -9464052 - B4A SINE B4 -119 173 41 2 1676 484 322 49 7 chr5 143073263 143073407 -9463852 - RSINE1 SINE B4 -14 151 2 2 1676 201 147 0 0 chr5 143073414 143073448 -9463811 + (CAT)n Simple_repeat Simple_repeat 3 36 0 2 1676 696 237 56 34 chr5 143073454 143073633 -9463626 - B3A SINE B2 -15 183 1 2 1676 646 195 49 0 chr5 143074015 143074138 -9463121 + RSINE1 SINE B4 3 131 -34 2 1676 393 22 0 0 chr5 143074156 143074202 -9463057 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1676 295 300 97 57 chr5 143074305 143074584 -9462675 + B4 SINE B4 2 291 -1 2 1676 332 178 14 0 chr5 143074592 143074665 -9462594 + (CA)n Simple_repeat Simple_repeat 2 75 0 2 1676 286 272 9 151 chr5 143074780 143074804 -9462455 + B1F SINE Alu 13 52 -97 2 1676 307 259 35 0 chr5 143074804 143074889 -9462370 + ID_B1 SINE B4 116 203 -21 2 1676 286 272 9 151 chr5 143074889 143074943 -9462316 + B1F SINE Alu 53 149 0 2 1676 296 275 174 47 chr5 143074954 143075103 -9462156 + B4 SINE B4 3 170 -122 2 1676 331 65 374 9 chr5 143075196 143075303 -9461956 - B2_Mm2 SINE B2 -3 192 47 2 1676 1302 51 23 11 chr5 143075331 143075508 -9461751 - B2_Mm2 SINE B2 -14 181 3 2 1676 519 298 46 42 chr5 143075539 143075756 -9461503 + ID_B1 SINE B4 6 223 -1 2 1676 300 284 56 56 chr5 143075931 143076073 -9461186 + Zaphod DNA Tip100 119 260 -3771 2 1676 221 269 89 13 chr5 143076228 143076307 -9460952 + B1_Mus1 SINE Alu 13 97 -51 2 1676 250 325 12 0 chr5 143076322 143076405 -9460854 + L1MB3 LINE L1 5979 6062 -121 2 1676 2725 128 45 65 chr5 143076589 143077125 -9460134 + RLTR11A2 LTR ERVK 3 527 0 2 1676 357 302 38 0 chr5 143077214 143077320 -9459939 - PB1D7 SINE Alu -2 118 9 2 1676 533 286 25 39 chr5 143077360 143077564 -9459695 + MER3 DNA MER1_type 5 205 -4 2 1676 263 305 94 9 chr5 143077670 143077776 -9459483 + PB1D10 SINE Alu 1 115 -2 2 1676 2242 161 36 32 chr5 143078144 143078617 -9458642 + RMER6A LTR ERVK 282 756 0 2 1676 534 275 174 13 chr5 143079055 143079291 -9457968 + B4 SINE B4 2 275 -17 2 1676 237 257 127 14 chr5 143079424 143079495 -9457764 + ID4_ SINE ID 1 79 -4 2 1676 243 0 0 0 chr5 143079495 143079522 -9457737 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1676 1130 62 7 0 chr5 143079535 143079680 -9457579 + B1_Mus1 SINE Alu 3 148 0 2 1676 1159 114 74 0 chr5 143079690 143079865 -9457394 + B2_Mm1t SINE B2 1 188 -5 2 1676 836 236 9 48 chr5 143080007 143080238 -9457021 - ID_B1 SINE B4 0 224 3 2 1676 468 160 0 0 chr5 143080771 143080846 -9456413 - tRNA-Lys-AAG tRNA tRNA -1 75 1 2 1676 1271 170 71 15 chr5 143080844 143081112 -9456147 + RLTR17 LTR ERVK 333 615 -77 2 1676 254 275 24 24 chr5 143081124 143081206 -9456053 - PB1D10 SINE Alu 0 117 36 2 1676 357 302 0 11 chr5 143081317 143081404 -9455855 - RSINE1 SINE B4 -25 140 55 2 1676 444 118 0 0 chr5 143081514 143081582 -9455677 + (CATG)n Simple_repeat Simple_repeat 4 71 0 2 1676 596 200 0 25 chr5 143081908 143082026 -9455233 + PB1D9 SINE Alu 5 119 -1 2 1676 736 222 0 0 chr5 143082191 143082335 -9454924 + RSINE1 SINE B4 1 144 -21 2 1676 207 235 19 19 chr5 143082463 143082515 -9454744 + GA-rich Low_complexity Low_complexity 1 52 0 2 1676 795 286 53 18 chr5 143082642 143082923 -9454336 - B4 SINE B4 0 292 2 2 1676 339 171 86 0 chr5 143082990 143083060 -9454199 + ID4_ SINE ID 2 77 -6 2 1676 547 254 19 52 chr5 143083343 143083497 -9453762 + B1F SINE Alu 1 149 0 2 1676 426 306 33 33 chr5 143083522 143083674 -9453585 + RSINE1 SINE B4 8 159 -6 2 1676 508 219 59 9 chr5 143083844 143083976 -9453283 + B1F SINE Alu 12 149 0 2 1676 430 179 10 21 chr5 143083994 143084091 -9453168 + B1_Mur1 SINE Alu 48 143 -6 2 1676 188 363 34 50 chr5 143084192 143084311 -9452948 - MIRb SINE MIR -56 212 96 2 1676 23 0 0 0 chr5 143084757 143084780 -9452479 + GC_rich Low_complexity Low_complexity 1 23 0 2 1676 206 288 0 24 chr5 143085069 143085151 -9452108 + C-rich Low_complexity Low_complexity 4 83 0 2 1676 578 223 38 105 chr5 143085271 143085481 -9451778 - B3A SINE B2 0 198 3 2 1676 561 303 0 0 chr5 143085501 143085633 -9451626 - RSINE1 SINE B4 -30 135 4 2 1676 652 275 35 15 chr5 143085771 143085974 -9451285 + MTE2b LTR MaLR 10 216 -163 2 1676 737 127 97 0 chr5 143085994 143086128 -9451131 - B1_Mus1 SINE Alu 0 148 2 2 1676 228 175 0 0 chr5 143086129 143086169 -9451090 + MTE2b LTR MaLR 203 242 -137 2 1676 229 370 0 24 chr5 143086259 143086342 -9450917 - ID4_ SINE ID -2 81 1 2 1676 468 211 8 34 chr5 143086355 143086473 -9450786 - ID_B1 SINE B4 0 224 110 2 1676 1375 73 11 0 chr5 143086910 143087136 -9450123 + ZP3AR Satellite Satellite 1 228 -1 2 1676 823 194 0 0 chr5 143087262 143087401 -9449858 + B1_Mus1 SINE Alu 2 140 -8 2 1676 205 286 18 0 chr5 143087408 143087464 -9449795 + GA-rich Low_complexity Low_complexity 1 57 0 2 1676 22 35 0 0 chr5 143087477 143087506 -9449753 + AT_rich Low_complexity Low_complexity 1 29 0 2 1676 391 281 31 0 chr5 143087559 143087655 -9449604 + PB1D7 SINE Alu 1 99 -21 2 1676 218 194 0 15 chr5 143087666 143087734 -9449525 + GA-rich Low_complexity Low_complexity 2 68 0 2 1676 644 322 23 9 chr5 143087754 143087970 -9449289 + B4 SINE B4 1 219 -73 2 1676 1027 214 19 0 chr5 143087979 143088189 -9449070 + B3 SINE B2 2 215 -1 2 1676 677 12 12 0 chr5 143089133 143089215 -9448044 + (TCCC)n Simple_repeat Simple_repeat 4 86 0 3 1676 212 333 19 0 chr5 143089244 143089298 -9447961 - ID4_ SINE ID -3 80 26 3 1676 1450 53 6 0 chr5 143089335 143089585 -9447674 + ZP3AR Satellite Satellite 1 251 -1 3 1676 240 228 38 12 chr5 143089585 143089665 -9447594 + ID4 SINE ID 1 82 -1 3 1676 243 174 41 55 chr5 143090067 143090140 -9447119 - ID4 SINE ID -11 72 1 3 1676 1564 29 2 0 chr5 143090079 143090330 -9446929 - ZP3AR Satellite Satellite -3 251 1 3 1676 274 292 133 0 chr5 143090635 143090748 -9446511 - MER67A LTR ERV1 -5 538 411 3 1676 408 40 0 0 chr5 143090753 143090803 -9446456 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1676 261 0 0 0 chr5 143090803 143090831 -9446428 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1676 553 267 46 0 chr5 143090941 143091072 -9446187 - RSINE1 SINE B4 -19 146 10 3 1676 780 283 4 46 chr5 143091074 143091311 -9445948 - B4 SINE B4 -64 228 2 3 1676 231 286 14 0 chr5 143091311 143091381 -9445878 - BC1_Mm scRNA scRNA -67 85 15 3 1676 395 291 18 0 chr5 143091398 143091508 -9445751 - PB1D10 SINE Alu -5 112 1 3 1676 394 296 57 36 chr5 143091541 143091681 -9445578 + ID_B1 SINE B4 82 224 0 3 1676 264 245 68 48 chr5 143091809 143091912 -9445347 - MER67A LTR ERV1 -333 210 106 3 1676 603 92 0 0 chr5 143092016 143092103 -9445156 + (GGAA)n Simple_repeat Simple_repeat 4 90 0 3 1676 330 26 0 0 chr5 143092708 143092747 -9444512 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 3 1676 280 304 27 100 chr5 143092796 143092819 -9444440 - ID_B1 SINE B4 -9 215 128 3 1676 379 264 17 52 chr5 143092819 143092935 -9444324 - B1F SINE Alu -37 112 1 3 1676 280 304 27 100 chr5 143092935 143092946 -9444313 - ID_B1 SINE B4 -9 127 77 3 1676 369 0 0 0 chr5 143093020 143093061 -9444198 + (TG)n Simple_repeat Simple_repeat 2 42 0 3 1676 620 265 13 19 chr5 143093070 143093224 -9444035 - RSINE1 SINE B4 -11 154 2 3 1676 580 210 27 40 chr5 143093224 143093373 -9443886 - B1F1 SINE Alu -2 147 1 3 1676 783 318 21 28 chr5 143093674 143093956 -9443303 - RMER15 LTR ERVL 0 575 296 3 1676 308 228 48 88 chr5 143093999 143094124 -9443135 - RMER15 LTR ERVL -448 127 8 3 1676 392 277 54 0 chr5 143094697 143094809 -9442450 - RSINE1 SINE B4 -33 132 15 3 1676 774 238 111 5 chr5 143094823 143095013 -9442246 - ID_B1 SINE B4 -3 221 12 3 1676 797 189 200 0 chr5 143095048 143095223 -9442036 - B3 SINE B2 -4 212 3 3 1676 559 235 0 0 chr5 143095238 143095353 -9441906 - PB1D10 SINE Alu -1 116 2 3 1676 329 157 0 41 chr5 143095366 143095439 -9441820 + C-rich Low_complexity Low_complexity 5 74 0 3 1676 373 266 23 30 chr5 143095469 143095601 -9441658 - B1F SINE Alu -1 148 18 3 1676 776 197 83 21 chr5 143095612 143095804 -9441455 + B3 SINE B2 13 216 0 3 1676 405 39 0 0 chr5 143095884 143095935 -9441324 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 1676 995 122 191 5 chr5 143096120 143096309 -9440950 + URR1A DNA MER1_type 3 226 0 3 1676 484 275 53 8 chr5 143096459 143096591 -9440668 - ID_B1 SINE B4 -81 143 6 3 1676 303 206 16 0 chr5 143096618 143096681 -9440578 - ID4 SINE ID -19 64 1 3 1676 315 261 0 71 chr5 143096726 143096825 -9440434 - ID_B1 SINE B4 -52 172 81 3 1676 404 271 49 0 chr5 143096824 143096946 -9440313 + MER89 LTR ERV1 328 455 -104 3 1676 221 94 0 0 chr5 143097031 143097063 -9440196 + PB1 SINE Alu 72 103 -24 3 1676 209 194 0 0 chr5 143097063 143097099 -9440160 + GA-rich Low_complexity Low_complexity 2 37 0 3 1676 200 106 64 0 chr5 143097187 143097234 -9440025 + (GTTTG)n Simple_repeat Simple_repeat 1 50 0 3 1676 579 84 2 0 chr5 143097234 143097323 -9439936 - B1_Mur4 SINE Alu 0 150 59 3 1676 306 276 13 0 chr5 143097314 143097390 -9439869 - RSINE1 SINE B4 -34 131 55 3 1676 252 0 0 0 chr5 143097438 143097466 -9439793 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1676 457 301 0 29 chr5 143097477 143097614 -9439645 - RSINE1 SINE B4 -18 147 15 3 1676 447 35 0 0 chr5 143097777 143097834 -9439425 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 1676 508 222 9 0 chr5 143097872 143097980 -9439279 - B3A SINE B2 -76 122 14 3 1676 465 234 73 0 chr5 143098262 143098386 -9438873 + ID_B1 SINE B4 25 157 -67 3 1676 258 32 0 0 chr5 143098891 143098922 -9438337 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3 1676 342 294 27 9 chr5 143098935 143099045 -9438214 + B1F1 SINE Alu 14 125 -24 3 1676 329 250 0 0 chr5 143099040 143099104 -9438155 + ID_B1 SINE B4 94 157 -67 3 1676 726 209 55 20 chr5 143099106 143099306 -9437953 + B3 SINE B2 2 208 -8 3 1676 283 232 42 218 chr5 143099306 143099321 -9437938 + B1F2 SINE Alu 80 148 -1 3 1676 344 235 0 24 chr5 143099321 143099404 -9437855 + ID_B1 SINE B4 143 223 -1 3 1676 363 223 147 11 chr5 143099433 143099528 -9437731 + RSINE1 SINE B4 22 129 -36 3 1676 629 86 0 11 chr5 143099537 143099631 -9437628 + (GGGA)n Simple_repeat Simple_repeat 3 95 0 3 1676 486 139 72 0 chr5 143099667 143099833 -9437426 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 3 1676 299 318 124 11 chr5 143099847 143100025 -9437234 + L1M4b LINE L1 567 764 -6570 3 1676 840 116 72 7 chr5 143100230 143100369 -9436890 + B1_Mur3 SINE Alu 2 149 0 3 1676 242 0 0 57 chr5 143100375 143100410 -9436849 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1676 1128 65 0 23 chr5 143100442 143100607 -9436652 + B2_Mm2 SINE B2 2 163 -32 3 1676 270 0 0 0 chr5 143100607 143100637 -9436622 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 3 1676 344 248 69 0 chr5 143100783 143100884 -9436375 - PB1D7 SINE Alu -10 110 3 3 1676 821 109 87 7 chr5 143100917 143101055 -9436204 + B1_Mur4 SINE Alu 1 149 -1 3 1676 421 274 0 8 chr5 143101134 143101252 -9436007 + PB1D10 SINE Alu 1 117 0 3 1676 555 299 52 71 chr5 143101370 143101582 -9435677 + ID_B1 SINE B4 16 223 -1 3 1676 367 244 128 17 chr5 143101594 143101711 -9435548 + B1_Mur2 SINE Alu 19 148 -1 3 1676 1895 297 71 21 chr5 143102183 143103320 -9433939 - Lx8 LINE L1 -983 6490 5287 3 1676 924 97 0 0 chr5 143103336 143103470 -9433789 - B1_Mus2 SINE Alu -5 142 9 3 1676 1010 234 34 11 chr5 143103470 143103734 -9433525 - Lx8 LINE L1 -576 5304 5035 3 1676 1863 276 143 20 chr5 143103737 143104473 -9432786 + Lx8 LINE L1 6643 7468 -5 3 1676 460 278 75 0 chr5 143104657 143104790 -9432469 + ID_B1 SINE B4 82 224 0 3 1676 523 264 232 9 chr5 143106882 143107115 -9430144 + B4A SINE B4 5 289 -3 3 1676 686 146 15 30 chr5 143107513 143107647 -9429612 + B1_Mus2 SINE Alu 4 135 -12 3 1676 370 206 55 0 chr5 143107678 143107751 -9429508 - PB1D10 SINE Alu -39 78 2 3 1676 1222 34 0 0 chr5 143107778 143107925 -9429334 - B1_Mus1 SINE Alu 0 148 2 3 1676 657 217 16 0 chr5 143107957 143108086 -9429173 + B1_Mur2 SINE Alu 9 139 -10 3 1676 530 324 3 124 chr5 143108130 143108412 -9428847 + B4A SINE B4 45 292 0 3 1676 1033 77 0 34 chr5 143108548 143108695 -9428564 + B1_Mm SINE Alu 1 142 -5 3 1676 1131 49 14 0 chr5 143109784 143109928 -9427331 - B1_Mus2 SINE Alu -1 146 1 3 1676 433 254 119 7 chr5 143110057 143110200 -9427059 - B3A SINE B2 -38 160 2 3 1676 358 277 7 99 chr5 143110215 143110367 -9426892 - ID_B1 SINE B4 -1 223 86 3 1676 210 211 127 0 chr5 143110379 143110450 -9426809 - PB1D9 SINE Alu -6 114 35 3 1676 1175 42 0 0 chr5 143110496 143110638 -9426621 + B1_Mus2 SINE Alu 5 146 -1 3 1676 1179 54 0 0 chr5 143110759 143110906 -9426353 - B1_Mm SINE Alu 0 147 1 3 1676 533 287 48 27 chr5 143111557 143111743 -9425516 + B3A SINE B2 1 190 -8 3 1676 432 327 63 13 chr5 143111742 143111808 -9425451 + ID SINE ID 11 84 -140 3 1676 421 301 35 9 chr5 143111808 143111922 -9425337 + PB1D10 SINE Alu 1 117 0 3 1676 354 175 157 36 chr5 143112159 143112242 -9425017 - PB1D9 SINE Alu 0 120 28 3 1676 523 277 43 0 chr5 143112681 143112822 -9424437 - B1F2 SINE Alu 0 149 3 3 1676 767 168 7 28 chr5 143113236 143113377 -9423882 - URR1B DNA MER1_type 0 225 88 3 1676 253 202 95 63 chr5 143113679 143113774 -9423485 - L1MA9 LINE L1 0 6312 6215 3 1676 482 267 112 10 chr5 143113784 143113981 -9423278 + B4A SINE B4 1 217 -75 3 1676 809 200 106 15 chr5 143114728 143114926 -9422333 + B3 SINE B2 1 216 0 3 1676 847 217 66 87 chr5 143114947 143115235 -9422024 - B4A SINE B4 -10 282 1 3 1676 467 302 71 7 chr5 143115297 143115437 -9421822 - RSINE1 SINE B4 -12 153 5 3 1676 1193 28 21 7 chr5 143115472 143115617 -9421642 + B1_Mm SINE Alu 1 147 0 3 1676 1149 83 7 0 chr5 143115641 143115786 -9421473 + B1_Mus1 SINE Alu 2 147 -1 3 1676 1610 230 66 146 chr5 143115869 143116596 -9420663 - RMER17B LTR ERVK -32 926 258 3 1676 1169 142 18 40 chr5 143116631 143116859 -9420400 - URR1B DNA MER1_type 0 225 3 3 1676 296 222 208 20 chr5 143116884 143116985 -9420274 + PB1D7 SINE Alu 1 120 0 3 1676 225 0 0 0 chr5 143117029 143117054 -9420205 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 3 1676 438 232 26 43 chr5 143117328 143117445 -9419814 - B3 SINE B2 -95 121 7 3 1676 430 296 161 38 chr5 143117483 143117750 -9419509 - L1MD2 LINE L1 -465 5894 5595 3 1676 383 256 93 0 chr5 143117992 143118078 -9419181 - B1_Mus2 SINE Alu -10 137 44 4 1676 2545 178 147 10 chr5 143118510 143119033 -9418226 - RLTR17 LTR ERVK 0 692 98 4 1676 6482 195 65 48 chr5 143119060 143120963 -9416296 - RMER3D-int LTR ERVK -5 2837 377 4 1676 691 254 91 99 chr5 143121052 143121467 -9415792 - RMER3D-int LTR ERVK -1692 1150 741 4 1676 1563 47 0 25 chr5 143121467 143121663 -9415596 - B2_Mm1t SINE B2 -1 192 2 4 1676 691 254 91 99 chr5 143121663 143121810 -9415449 - RMER3D-int LTR ERVK -2102 740 593 4 1676 428 145 26 13 chr5 143121819 143121896 -9415363 - RMER3D-int LTR ERVK -2764 78 1 4 1676 588 129 20 10 chr5 143122007 143122109 -9415150 + RLTR17 LTR ERVK 98 200 -492 4 1676 928 162 7 0 chr5 143122131 143122285 -9414974 + RLTR17 LTR ERVK 308 462 -230 4 1676 1780 41 0 9 chr5 143122290 143122513 -9414746 - MT2C_Mm LTR ERVL -254 221 1 4 1676 328 207 33 83 chr5 143122513 143122542 -9414717 - ORR1A3-int LTR MaLR -1350 613 591 4 1676 305 152 49 37 chr5 143122537 143122619 -9414640 - ORR1A3-int LTR MaLR -1314 649 567 4 1676 1827 109 155 9 chr5 143122619 143122961 -9414298 - MERVL_2A-int LTR ERVL -132 5629 5238 4 1676 207 0 0 0 chr5 143122961 143122984 -9414275 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1676 585 203 72 43 chr5 143122986 143123125 -9414134 + RLTR17 LTR ERVK 550 692 0 4 1676 551 15 15 0 chr5 143123750 143123818 -9413441 + (TCTCC)n Simple_repeat Simple_repeat 2 70 0 4 1676 931 147 7 20 chr5 143123819 143123965 -9413294 - B1_Mus2 SINE Alu 0 147 4 4 1676 526 228 10 0 chr5 143123991 143124092 -9413167 - PB1D9 SINE Alu -8 112 11 4 1676 347 281 24 173 chr5 143124665 143124833 -9412426 - PB1D10 SINE Alu -2 147 5 4 1676 929 210 29 10 chr5 143124870 143125077 -9412182 - ID_B1 SINE B4 -9 215 5 4 1676 346 284 65 29 chr5 143126084 143126222 -9411037 + B4A SINE B4 66 208 -84 4 1676 766 298 99 22 chr5 143126711 143127164 -9410095 - L1MB8 LINE L1 -9 6169 5682 4 1676 300 27 0 0 chr5 143127345 143127382 -9409877 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 4 1676 860 98 0 0 chr5 143127388 143127511 -9409748 + B1_Mus2 SINE Alu 25 147 0 4 1676 937 158 13 20 chr5 143127813 143127962 -9409297 - B1_Mur2 SINE Alu 0 149 2 4 1676 436 267 25 17 chr5 143128138 143128256 -9409003 - PB1D7 SINE Alu 0 120 2 4 1676 4390 60 49 17 chr5 143128566 143129161 -9408098 + L1_Mus3 LINE L1 6024 6637 -1 4 1676 320 268 22 44 chr5 143129987 143130077 -9407182 - B1F2 SINE Alu -15 134 47 4 1676 519 17 0 0 chr5 143130107 143130167 -9407092 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1676 520 237 75 15 chr5 143130318 143130451 -9406808 - B1_Mur1 SINE Alu -5 144 4 4 1677 315 197 197 0 chr5 143131306 143131377 -9405882 + RSINE1 SINE B4 3 87 -78 4 1677 347 0 23 0 chr5 143131647 143131690 -9405569 + (TG)n Simple_repeat Simple_repeat 1 44 0 4 1677 378 0 0 0 chr5 143131690 143131731 -9405528 + (GA)n Simple_repeat Simple_repeat 1 42 0 4 1677 512 229 7 51 chr5 143131988 143132126 -9405133 + ID_B1 SINE B4 16 147 -77 4 1677 528 280 110 89 chr5 143132139 143132421 -9404838 + B4A SINE B4 5 292 0 4 1677 566 228 27 7 chr5 143132567 143132713 -9404546 - B1_Mur2 SINE Alu 0 149 1 4 1677 564 241 137 19 chr5 143133363 143133524 -9403735 + B3A SINE B2 1 180 -18 4 1677 247 128 0 0 chr5 143133822 143133861 -9403398 - B3A SINE B2 -158 40 2 4 1677 538 287 6 37 chr5 143134266 143134429 -9402830 + RSINE1 SINE B4 3 160 -5 4 1677 521 245 49 7 chr5 143134471 143134615 -9402644 + RSINE1 SINE B4 3 152 -13 4 1677 238 270 234 16 chr5 143135817 143135945 -9401314 - ORR1E LTR MaLR -145 214 59 4 1677 237 191 24 0 chr5 143136061 143136103 -9401156 + RSINE1 SINE B4 83 125 -40 4 1677 198 118 0 0 chr5 143136103 143136137 -9401122 + (CA)n Simple_repeat Simple_repeat 1 34 0 4 1677 252 86 0 0 chr5 143136168 143136203 -9401056 + (GGA)n Simple_repeat Simple_repeat 3 37 0 4 1677 543 144 101 46 chr5 143136249 143136358 -9400901 + B1_Mur1 SINE Alu 33 147 -2 4 1677 880 60 26 0 chr5 143136423 143136539 -9400720 - B1_Mus1 SINE Alu -1 147 29 4 1677 288 77 0 0 chr5 143137692 143137731 -9399528 + (GGA)n Simple_repeat Simple_repeat 2 40 0 4 1677 429 189 52 72 chr5 143137775 143137872 -9399387 + B1_Mur1 SINE Alu 33 127 -22 4 1677 1268 41 0 0 chr5 143138521 143138667 -9398592 + B1_Mus2 SINE Alu 2 147 0 4 1677 235 157 39 19 chr5 143138716 143138768 -9398491 - MurSatRep1 Unknown Unknown -1855 282 230 4 1677 667 185 131 0 chr5 143139176 143139306 -9397953 - B1_Mus2 SINE Alu 0 147 1 4 1677 225 288 33 33 chr5 143139345 143139406 -9397853 - ID4_ SINE ID -9 74 14 4 1677 594 305 58 7 chr5 143139424 143139579 -9397680 + RSINE1 SINE B4 3 165 0 4 1677 22 35 0 0 chr5 143139580 143139609 -9397650 + AT_rich Low_complexity Low_complexity 1 29 0 4 1677 249 289 53 43 chr5 143139985 143140079 -9397180 + RSINE1 SINE B4 53 147 -18 4 1677 312 311 56 9 chr5 143140919 143141026 -9396233 + B4A SINE B4 72 183 -109 4 1677 318 230 46 83 chr5 143143097 143143206 -9394053 - L1MEg LINE L1 -4115 1969 1865 4 1677 591 210 27 12 chr5 143144027 143144162 -9393097 - B1F SINE Alu -19 130 1 4 1677 261 344 65 77 chr5 143144162 143144197 -9393062 - B4 SINE B4 -85 207 40 4 1677 733 196 30 0 chr5 143145173 143145306 -9391953 + B1F1 SINE Alu 12 148 -1 4 1677 201 40 0 0 chr5 143145524 143145549 -9391710 + MIRc SINE MIR 168 192 -76 4 1677 266 297 26 26 chr5 143146003 143146117 -9391142 - PB1D10 SINE Alu 0 117 4 4 1677 471 258 127 16 chr5 143146731 143146857 -9390402 + ID_B1 SINE B4 74 213 -11 4 1677 580 161 196 0 chr5 143146857 143146969 -9390290 + B1_Mus1 SINE Alu 3 136 -12 4 1677 572 226 123 0 chr5 143147008 143147154 -9390105 + B3 SINE B2 2 165 -51 4 1677 1193 56 0 0 chr5 143147175 143147317 -9389942 - B1_Mus1 SINE Alu -6 142 1 4 1677 488 168 71 53 chr5 143147363 143147476 -9389783 + B3A SINE B2 9 123 -75 4 1677 313 264 75 31 chr5 143147522 143147667 -9389592 + B3 SINE B2 2 205 -11 4 1677 1174 88 0 0 chr5 143147724 143147871 -9389388 + B1_Mm SINE Alu 1 147 0 4 1677 308 266 78 78 chr5 143147878 143148042 -9389217 + RSINE1 SINE B4 10 146 -146 4 1677 429 220 22 11 chr5 143147998 143148090 -9389169 + PB1D10 SINE Alu 19 111 -6 4 1677 805 240 41 0 chr5 143148101 143148272 -9388987 + B3A SINE B2 3 180 -18 4 1677 307 200 79 13 chr5 143148315 143148391 -9388868 + ID2 SINE ID 3 83 0 4 1677 25 31 0 0 chr5 143148642 143148674 -9388585 + AT_rich Low_complexity Low_complexity 1 32 0 4 1677 575 254 91 20 chr5 143148684 143148881 -9388378 + B3 SINE B2 1 211 -5 4 1677 726 239 70 74 chr5 143150368 143150639 -9386620 - B4 SINE B4 -21 271 2 4 1677 796 184 57 0 chr5 143150671 143150812 -9386447 - B1_Mur3 SINE Alu 0 149 1 4 1677 556 296 0 27 chr5 143150814 143150963 -9386296 - B1F2 SINE Alu -1 148 4 4 1677 2502 143 44 15 chr5 143150993 143151398 -9385861 + MTC LTR MaLR 5 421 0 4 1677 225 0 0 0 chr5 143151498 143151523 -9385736 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 4 1677 425 327 0 26 chr5 143151524 143151637 -9385622 - B4 SINE B4 -80 212 103 4 1677 267 31 0 0 chr5 143151677 143151709 -9385550 + (TATG)n Simple_repeat Simple_repeat 3 34 0 4 1677 1317 20 0 0 chr5 143151735 143151882 -9385377 + B1_Mm SINE Alu 1 147 0 4 1677 374 308 111 37 chr5 143151897 143152032 -9385227 - RSINE1 SINE B4 -19 146 2 4 1677 391 327 112 14 chr5 143152032 143152317 -9384942 + L1M4 LINE L1 5391 5703 -471 4 1677 332 212 535 8 chr5 143152654 143152783 -9384476 + ID_B1 SINE B4 4 200 -24 4 1677 738 197 42 14 chr5 143153068 143153212 -9384047 + ID_B1 SINE B4 76 223 -1 4 1677 999 89 0 48 chr5 143153212 143153401 -9383858 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4 1677 387 0 0 0 chr5 143153618 143153661 -9383598 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1677 386 346 25 6 chr5 143154647 143154874 -9382385 + (TG)n Simple_repeat Simple_repeat 1 231 0 4 1677 657 282 85 98 chr5 143154890 143155185 -9382074 - B4 SINE B4 -1 291 1 4 1677 391 219 24 0 chr5 143155185 143155264 -9381995 - B4A SINE B4 -64 228 148 4 1677 402 21 0 0 chr5 143155271 143155318 -9381941 + (TC)n Simple_repeat Simple_repeat 1 47 0 4 1677 1293 218 28 122 chr5 143155323 143155683 -9381576 + MTEa LTR MaLR 54 379 0 4 1677 1348 64 53 0 chr5 143155768 143155939 -9381320 + B2_Mm2 SINE B2 2 181 -14 4 1677 888 98 120 0 chr5 143155990 143156123 -9381136 + B1_Mur4 SINE Alu 1 149 -1 4 1677 471 312 96 23 chr5 143156167 143156344 -9380915 - B4A SINE B4 -102 190 1 4 1677 429 294 9 0 chr5 143156566 143156675 -9380584 + ID_B1 SINE B4 92 201 -23 4 1677 374 192 37 49 chr5 143156648 143156730 -9380529 + B1F1 SINE Alu 68 148 -1 4 1677 564 298 18 18 chr5 143156747 143156911 -9380348 + RSINE1 SINE B4 2 165 0 4 1677 905 154 0 4 chr5 143156941 143157456 -9379803 + (CA)n Simple_repeat Simple_repeat 1 512 0 4 1677 938 73 0 53 chr5 143157508 143157697 -9379562 + (CCCTAA)n Simple_repeat Simple_repeat 2 180 0 4 1677 1088 133 197 0 chr5 143157700 143157888 -9379371 + URR1B DNA MER1_type 1 225 0 4 1677 938 141 0 0 chr5 143158321 143158456 -9378803 - B1_Mus1 SINE Alu -12 136 2 4 1677 500 281 100 88 chr5 143158929 143159190 -9378069 - B4A SINE B4 -1 291 28 4 1677 898 199 154 52 chr5 143159192 143159425 -9377834 + MTEb LTR MaLR 78 334 -45 5 1677 1367 59 36 46 chr5 143159450 143159646 -9377613 + B2_Mm2 SINE B2 2 195 0 5 1677 476 122 0 12 chr5 143159646 143159729 -9377530 + (GAAAA)n Simple_repeat Simple_repeat 1 82 0 5 1677 386 299 80 0 chr5 143159741 143159878 -9377381 + L1MB4 LINE L1 6026 6173 -7 5 1677 1676 301 96 55 chr5 143160012 143160838 -9376421 + Lx8 LINE L1 6432 7335 -138 5 1677 1231 34 0 13 chr5 143160838 143160987 -9376272 + B1_Mus2 SINE Alu 1 147 0 5 1677 1676 301 96 55 chr5 143160987 143161153 -9376106 + Lx8 LINE L1 7336 7464 -9 5 1677 180 152 0 0 chr5 143161169 143161202 -9376057 + (CACCAT)n Simple_repeat Simple_repeat 4 36 0 5 1677 859 285 46 15 chr5 143161202 143161462 -9375797 + B4A SINE B4 3 270 -22 5 1677 366 23 0 0 chr5 143161462 143161505 -9375754 + (TG)n Simple_repeat Simple_repeat 2 44 0 5 1677 351 100 0 0 chr5 143161562 143161612 -9375647 - HAL1-3A_ME LINE L1 -840 2018 1969 5 1677 596 231 0 0 chr5 143161764 143161868 -9375391 + PB1D7 SINE Alu 1 104 -16 5 1677 199 79 0 50 chr5 143161869 143161909 -9375350 + (TGG)n Simple_repeat Simple_repeat 1 38 0 5 1677 720 192 132 55 chr5 143161911 143162093 -9375166 + B3A SINE B2 2 197 -1 5 1677 830 166 234 0 chr5 143162129 143162304 -9374955 + B3 SINE B2 1 216 0 5 1677 230 228 80 106 chr5 143162562 143162675 -9374584 - MamGypLTR1d LTR Gypsy -643 170 61 5 1677 378 0 0 0 chr5 143162986 143163028 -9374231 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1677 858 197 5 96 chr5 143163622 143163830 -9373429 - URR1B DNA MER1_type -2 223 35 5 1677 276 247 12 38 chr5 143164112 143164192 -9373067 - MTEa LTR MaLR -9 370 293 5 1677 210 91 0 0 chr5 143164328 143164361 -9372898 + (GA)n Simple_repeat Simple_repeat 2 34 0 5 1677 1335 78 33 20 chr5 143164519 143164758 -9372501 - ZP3AR Satellite Satellite -97 241 1 5 1677 825 11 0 0 chr5 143164788 143164882 -9372377 + (GA)n Simple_repeat Simple_repeat 1 94 0 5 1677 946 246 40 6 chr5 143165306 143165528 -9371731 + ID_B1 SINE B4 14 245 -47 5 1677 258 156 0 0 chr5 143166215 143166260 -9370999 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1677 506 302 6 80 chr5 143166260 143166436 -9370823 - RSINE1 SINE B4 0 165 3 5 1677 243 250 71 71 chr5 143166608 143166720 -9370539 - MER63D DNA AcHobo -940 121 10 5 1677 210 156 0 0 chr5 143167349 143167394 -9369865 + (TCTCTG)n Simple_repeat Simple_repeat 2 46 0 5 1677 196 77 51 0 chr5 143167453 143167492 -9369767 + (CAAAAA)n Simple_repeat Simple_repeat 3 43 0 5 1677 1401 68 3 6 chr5 143167529 143167796 -9369463 - ZP3AR Satellite Satellite -11 266 1 5 1677 183 314 14 0 chr5 143168227 143168297 -9368962 - MIRc SINE MIR -131 137 67 5 1677 384 22 0 0 chr5 143168556 143168601 -9368658 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1677 184 385 40 30 chr5 143168719 143168818 -9368441 + MIRm SINE MIR 117 216 -60 5 1677 247 181 26 5 chr5 143168880 143168946 -9368313 + MIR SINE MIR 60 129 -139 5 1677 240 267 40 13 chr5 143169105 143169181 -9368078 + ID_B1 SINE B4 98 175 -49 5 1677 206 139 0 44 chr5 143169182 143169227 -9368032 + G-rich Low_complexity Low_complexity 4 46 0 5 1677 225 154 0 0 chr5 143169923 143169962 -9367297 + CT-rich Low_complexity Low_complexity 3 41 0 5 1677 276 120 0 0 chr5 143169991 143170041 -9367218 + (T)n Simple_repeat Simple_repeat 1 50 0 5 1677 444 277 55 55 chr5 143170041 143170240 -9367019 - ID_B1 SINE B4 0 224 26 5 1677 708 194 184 27 chr5 143170298 143170483 -9366776 - B3 SINE B2 0 216 3 5 1677 218 286 0 0 chr5 143170521 143170570 -9366689 - ID SINE ID -152 72 24 5 1677 245 324 0 14 chr5 143170577 143170646 -9366613 - ID4_ SINE ID -2 81 14 5 1677 231 283 56 83 chr5 143170600 143170708 -9366551 - ZP3AR Satellite Satellite -106 106 2 5 1677 504 0 0 0 chr5 143171357 143171413 -9365846 + (TC)n Simple_repeat Simple_repeat 1 56 0 5 1677 577 208 25 0 chr5 143171452 143171572 -9365687 - RSINE1 SINE B4 -32 133 11 5 1677 324 314 19 19 chr5 143171738 143171842 -9365417 + PB1D10 SINE Alu 14 117 0 5 1677 227 222 18 18 chr5 143171842 143171897 -9365362 + GA-rich Low_complexity Low_complexity 2 56 0 5 1677 587 191 0 15 chr5 143171969 143172102 -9365157 + (TATG)n Simple_repeat Simple_repeat 4 134 0 5 1677 396 0 0 0 chr5 143172102 143172146 -9365113 + (GA)n Simple_repeat Simple_repeat 1 44 0 5 1677 393 202 0 53 chr5 143172168 143172262 -9364997 - ID_B1 SINE B4 -67 157 69 5 1677 388 258 69 71 chr5 143172299 143172587 -9364672 - B4A SINE B4 -19 273 2 5 1677 491 268 78 8 chr5 143172608 143172761 -9364498 - ID_B1 SINE B4 0 224 69 5 1677 326 299 110 8 chr5 143173081 143173199 -9364060 - MER2 DNA MER2_type 0 345 216 5 1677 1201 76 52 37 chr5 143173200 143173391 -9363868 - B2_Mm2 SINE B2 -1 194 1 5 1677 807 268 0 46 chr5 143173416 143173635 -9363624 - ID_B1 SINE B4 -13 211 3 5 1677 218 182 23 0 chr5 143173726 143173770 -9363489 + ID4_ SINE ID 5 49 -34 5 1677 264 100 0 0 chr5 143173782 143173822 -9363437 + (CA)n Simple_repeat Simple_repeat 2 41 0 5 1677 657 240 69 15 chr5 143173829 143174032 -9363227 + B3 SINE B2 1 214 -2 5 1677 600 246 0 0 chr5 143174350 143174632 -9362627 + (TG)n Simple_repeat Simple_repeat 1 282 0 5 1677 441 255 104 7 chr5 143174649 143174803 -9362456 - B4A SINE B4 0 292 124 5 1677 596 138 50 15 chr5 143174804 143175148 -9362111 + CT-rich Low_complexity Low_complexity 1 356 0 5 1677 569 246 59 15 chr5 143175149 143175285 -9361974 - B4A SINE B4 -150 142 1 5 1677 319 162 68 0 chr5 143175825 143175899 -9361360 - ID2 SINE ID -4 79 1 5 1677 266 211 0 0 chr5 143175899 143175951 -9361308 - ZP3AR Satellite Satellite -117 95 44 5 1677 224 299 52 0 chr5 143175966 143175991 -9361268 - B1F SINE Alu -8 141 40 5 1677 260 250 28 0 chr5 143175991 143176063 -9361196 - ID_B1 SINE B4 -30 194 121 5 1677 507 112 0 0 chr5 143176167 143176247 -9361012 + (TC)n Simple_repeat Simple_repeat 1 80 0 5 1677 322 164 206 0 chr5 143176296 143176369 -9360890 - B1F SINE Alu -55 94 7 5 1677 320 271 133 47 chr5 143176369 143176424 -9360835 - ID_B1 SINE B4 -52 172 34 5 1677 364 318 0 9 chr5 143176541 143176652 -9360607 + PB1D10 SINE Alu 7 116 -1 5 1677 1516 17 7 0 chr5 143180848 143181097 -9356162 + ZP3AR Satellite Satellite 1 250 0 5 1677 281 269 26 0 chr5 143181097 143181175 -9356084 + ID4 SINE ID 1 80 -3 5 1677 240 276 100 33 chr5 143181749 143181869 -9355390 + MIR3 SINE MIR 35 162 -46 5 1677 426 193 35 0 chr5 143182408 143182579 -9354680 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 5 1677 604 86 51 0 chr5 143182637 143182754 -9354505 + (TAGA)n Simple_repeat Simple_repeat 2 124 0 5 1677 392 287 35 0 chr5 143182756 143182871 -9354388 + PB1D7 SINE Alu 2 120 0 5 1677 200 246 28 21 chr5 143182888 143183029 -9354230 + (TAGA)n Simple_repeat Simple_repeat 3 144 0 5 1677 1251 170 25 5 chr5 143183004 143183620 -9353639 + (TGGA)n Simple_repeat Simple_repeat 1 628 0 5 1677 258 274 128 0 chr5 143183732 143183834 -9353425 - MLT1E3 LTR MaLR -426 198 84 5 1677 775 201 21 20 chr5 143184097 143184275 -9352984 - B3 SINE B2 -14 179 1 5 1677 524 193 105 0 chr5 143184313 143184427 -9352832 + B1_Mur3 SINE Alu 3 128 -21 5 1677 450 274 25 8 chr5 143184533 143184651 -9352608 - RSINE1 SINE B4 -30 135 16 5 1677 695 176 40 0 chr5 143184697 143184822 -9352437 + RSINE1 SINE B4 3 132 -33 5 1677 349 213 13 0 chr5 143184823 143184898 -9352361 + B4A SINE B4 4 79 -213 5 1677 685 216 41 6 chr5 143184834 143185006 -9352253 + B3 SINE B2 15 192 -24 5 1677 330 121 18 20 chr5 143185007 143185114 -9352145 - B2_Mm2 SINE B2 -3 192 47 5 1677 1254 76 12 0 chr5 143185170 143185342 -9351917 - B2_Mm1t SINE B2 -19 174 1 5 1677 680 172 94 41 chr5 143185418 143185588 -9351671 + B4A SINE B4 113 291 -1 5 1677 1055 231 0 0 chr5 143186003 143186211 -9351048 + ID_B1 SINE B4 1 208 -16 5 1677 1111 256 111 15 chr5 143186571 143186912 -9350347 - MTEb LTR MaLR -4 375 2 5 1677 382 255 98 0 chr5 143186917 143187019 -9350240 + B4A SINE B4 5 116 -176 5 1677 315 150 16 16 chr5 143187014 143187075 -9350184 - B1_Mus2 SINE Alu -86 61 1 5 1677 1228 54 0 29 chr5 143187098 143187270 -9349989 + B2_Mm2 SINE B2 15 181 -14 5 1677 298 183 17 0 chr5 143187305 143187365 -9349894 - B1F2 SINE Alu -88 61 1 5 1677 761 228 32 0 chr5 143187393 143187551 -9349708 + B3A SINE B2 1 163 -35 5 1677 1068 58 35 0 chr5 143187559 143187733 -9349526 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 5 1677 1351 209 27 70 chr5 143188247 143188618 -9348641 - ORR1E LTR MaLR -4 355 1 5 1677 1076 91 17 6 chr5 143189241 143189418 -9347841 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 5 1677 1127 82 0 0 chr5 143189418 143189565 -9347694 - B1_Mus2 SINE Alu 0 147 1 5 1677 1255 148 0 31 chr5 143189576 143189800 -9347459 - URR1B DNA MER1_type -6 219 3 5 1677 457 221 153 44 chr5 143190290 143190339 -9346920 - ID_B1 SINE B4 -71 153 111 5 1677 342 0 0 0 chr5 143190339 143190377 -9346882 + (CA)n Simple_repeat Simple_repeat 2 39 0 5 1677 457 221 153 44 chr5 143190377 143190464 -9346795 - ID_B1 SINE B4 -114 110 4 5 1677 336 230 115 0 chr5 143190473 143190560 -9346699 - PB1D10 SINE Alu -6 111 15 5 1677 315 0 0 0 chr5 143191383 143191418 -9345841 + (CAA)n Simple_repeat Simple_repeat 3 37 0 5 1677 414 277 7 47 chr5 143191458 143191606 -9345653 - RMER15 LTR ERVL -160 415 274 5 1677 270 115 0 0 chr5 143191713 143191765 -9345494 + (C)n Simple_repeat Simple_repeat 1 52 0 6 1677 665 255 108 20 chr5 143192283 143192487 -9344772 - ID_B1 SINE B4 0 224 3 6 1677 323 212 0 0 chr5 143195209 143195275 -9341984 - ID2 SINE ID -16 67 2 6 1677 1561 72 8 17 chr5 143195290 143195732 -9341527 + ZP3AR Satellite Satellite 1 438 0 6 1677 240 392 0 0 chr5 143195682 143195761 -9341498 + ID4_ SINE ID 1 79 -4 6 1677 357 344 65 45 chr5 143196228 143196520 -9340739 - L2a LINE L2 -98 3328 3031 6 1677 1498 34 14 0 chr5 143196521 143197164 -9340095 + ZP3AR Satellite Satellite 1 651 -1 6 1677 962 125 17 6 chr5 143198843 143199020 -9338239 + (TTCTC)n Simple_repeat Simple_repeat 1 179 0 6 1677 312 306 122 39 chr5 143199033 143199237 -9338022 - HAL1-3A_ME LINE L1 -661 2197 1977 6 1677 467 288 202 8 chr5 143199237 143199479 -9337780 - B4 SINE B4 -3 289 1 6 1677 285 323 73 29 chr5 143199843 143199980 -9337279 - B4 SINE B4 -4 288 146 6 1677 802 183 106 16 chr5 143200085 143200274 -9336985 - B3 SINE B2 -10 206 1 6 1677 216 158 0 0 chr5 143200573 143200611 -9336648 + T-rich Low_complexity Low_complexity 1 38 0 6 1677 210 105 0 0 chr5 143201054 143201092 -9336167 + (TA)n Simple_repeat Simple_repeat 1 38 0 6 1677 240 59 59 0 chr5 143201182 143201233 -9336026 + (CCGGG)n Simple_repeat Simple_repeat 3 56 0 6 1677 307 259 9 36 chr5 143202213 143202325 -9334934 + (CAGAGA)n Simple_repeat Simple_repeat 5 113 0 6 1677 370 321 42 21 chr5 143202372 143202515 -9334744 + B4A SINE B4 56 201 -91 6 1677 198 0 0 0 chr5 143202588 143202610 -9334649 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1677 254 106 21 0 chr5 143202792 143202839 -9334420 + (GGGA)n Simple_repeat Simple_repeat 3 50 0 6 1677 1453 58 16 0 chr5 143203146 143203335 -9333924 - B2_Mm2 SINE B2 -2 193 2 6 1677 763 245 92 98 chr5 143203346 143203735 -9333524 + MTE2a LTR MaLR 13 405 -14 6 1677 228 271 0 14 chr5 143204488 143204559 -9332700 + MTEb LTR MaLR 294 363 -16 6 1677 455 234 87 87 chr5 143204677 143204860 -9332399 - B3A SINE B2 -14 184 2 6 1677 763 184 0 29 chr5 143204872 143205012 -9332247 - B1_Mur2 SINE Alu -2 147 12 6 1677 363 263 160 42 chr5 143205680 143205799 -9331460 + ID_B1 SINE B4 40 172 -52 6 1677 889 109 0 28 chr5 143206109 143206250 -9331009 - B1_Mus1 SINE Alu -2 146 10 6 1677 244 309 146 17 chr5 143206388 143206566 -9330693 - ORR1E LTR MaLR -122 237 37 6 1677 249 197 32 16 chr5 143207035 143207097 -9330162 + MLT1A LTR MaLR 1 63 -404 6 1677 263 314 76 0 chr5 143207213 143207331 -9329928 + MLT1A LTR MaLR 197 323 -51 6 1677 950 285 112 20 chr5 143207633 143208188 -9329071 + Charlie1a DNA MER1_type 785 1390 -65 6 1677 366 245 78 48 chr5 143208191 143208294 -9328965 + PB1D10 SINE Alu 5 110 -7 6 1677 205 138 0 0 chr5 143208442 143208471 -9328788 + (CAG)n Simple_repeat Simple_repeat 1 29 0 6 1677 221 256 0 109 chr5 143208474 143208566 -9328693 + ID4_ SINE ID 2 83 0 6 1677 2336 146 78 99 chr5 143209770 143210357 -9326902 + RMER15 LTR ERVL 1 575 0 6 1677 308 327 83 19 chr5 143210533 143210689 -9326570 + MLT1A LTR MaLR 241 406 -2 6 1677 213 333 15 0 chr5 143212554 143212620 -9324639 - ID4 SINE ID -10 73 7 6 1677 24 32 0 0 chr5 143213971 143214002 -9323257 + AT_rich Low_complexity Low_complexity 1 31 0 6 1677 333 118 0 0 chr5 143214096 143214147 -9323112 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1677 335 235 37 0 chr5 143215214 143215295 -9321964 + RSINE1 SINE B4 57 140 -25 6 1677 546 260 33 44 chr5 143215917 143216098 -9321161 + MER3 DNA MER1_type 13 191 -18 6 1677 350 264 11 0 chr5 143216110 143216197 -9321062 + L1MC5 LINE L1 7331 7418 -543 6 1677 2986 166 19 3 chr5 143216435 143217010 -9320249 + Lx7 LINE L1 2221 2804 -3076 6 1677 486 309 17 43 chr5 143217017 143217247 -9320012 + RLTR15 LTR ERVK 1 224 -135 6 1677 3308 176 56 64 chr5 143217247 143217523 -9319736 + Lx7 LINE L1 3699 3985 -1895 6 1677 297 0 0 0 chr5 143217523 143217556 -9319703 + (TA)n Simple_repeat Simple_repeat 2 34 0 6 1677 3308 176 56 64 chr5 143217556 143218257 -9319002 + Lx7 LINE L1 3986 4667 -1213 6 1677 5198 143 61 17 chr5 143218253 143218988 -9318271 + Lx7 LINE L1 4830 5602 -278 6 1677 1950 177 13 20 chr5 143218988 143219385 -9317874 + ORR1B1 LTR MaLR 1 394 0 6 1677 5198 164 60 25 chr5 143219385 143219825 -9317434 + Lx7 LINE L1 5603 6055 -1641 6 1678 450 0 0 0 chr5 143270383 143270433 -9266826 + (TC)n Simple_repeat Simple_repeat 1 50 0 6 1678 233 309 10 21 chr5 143271336 143271432 -9265827 + L1MEf LINE L1 637 731 -5669 6 1678 657 303 124 10 chr5 143271438 143271745 -9265514 - MLT1B LTR MaLR -3 387 46 6 1678 342 194 16 0 chr5 143271849 143271911 -9265348 - ORR1E LTR MaLR 0 379 317 6 1678 1161 72 67 62 chr5 143271920 143272113 -9265146 + B2_Mm2 SINE B2 2 195 0 6 1678 350 308 48 105 chr5 143272145 143272407 -9264852 - ORR1E LTR MaLR -46 300 70 6 1678 3754 293 87 50 chr5 143272436 143273915 -9263344 - ORR1E-int LTR MaLR -41 1539 6 6 1678 661 299 118 84 chr5 143273923 143274270 -9262989 - ORR1E LTR MaLR 0 359 1 6 1678 516 378 91 24 chr5 143274367 143274784 -9262475 + L1MEf LINE L1 1016 1460 -4955 6 1678 679 183 13 13 chr5 143274784 143274939 -9262320 + GA-rich Low_complexity Low_complexity 1 155 0 6 1678 7130 57 3 2 chr5 143274975 143275852 -9261407 + L1Md_F2 LINE L1 5703 6580 -2 6 1678 1407 73 17 0 chr5 143275901 143276078 -9261181 + B2_Mm2 SINE B2 2 181 -14 6 1678 275 329 12 0 chr5 143276923 143277005 -9260254 - MTEb LTR MaLR 0 379 297 6 1678 296 24 24 0 chr5 143277345 143277386 -9259873 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1678 488 307 89 94 chr5 143277511 143277914 -9259345 + LTR40b LTR ERVL 53 453 -9 6 1678 252 226 0 0 chr5 143278851 143278913 -9258346 + CT-rich Low_complexity Low_complexity 4 65 0 6 1678 288 286 0 38 chr5 143278913 143279009 -9258250 - ID4_ SINE ID -48 104 18 6 1678 311 264 14 129 chr5 143279032 143279171 -9258088 - PB1 SINE Alu 0 127 5 6 1678 368 257 29 10 chr5 143279402 143279504 -9257755 - B1F SINE Alu -45 104 1 6 1678 466 312 0 0 chr5 143280513 143280625 -9256634 + B3A SINE B2 1 112 -86 6 1678 450 94 0 0 chr5 143280651 143280715 -9256544 + (CA)n Simple_repeat Simple_repeat 1 64 0 6 1678 240 35 0 0 chr5 143280781 143280810 -9256449 + (CA)n Simple_repeat Simple_repeat 2 30 0 6 1678 631 137 93 58 chr5 143281544 143281683 -9255576 + B1_Mur4 SINE Alu 7 150 0 6 1678 1972 189 117 21 chr5 143282230 143282761 -9254498 + RLTR31A_Mm LTR ERVK 1 582 -2 6 1678 577 219 225 24 chr5 143283042 143283327 -9253932 + ORR1D2 LTR MaLR 1 364 -6 6 1678 362 264 0 15 chr5 143283323 143283412 -9253847 + MTE2b LTR MaLR 18 100 -279 6 1678 1759 181 45 24 chr5 143283412 143283792 -9253467 + ORR1B1 LTR MaLR 1 388 -6 6 1678 890 253 38 29 chr5 143283789 143284029 -9253230 + MTE2b LTR MaLR 138 379 0 6 1678 422 167 12 0 chr5 143285443 143285527 -9251732 + (TG)n Simple_repeat Simple_repeat 2 86 0 6 1678 31 0 0 0 chr5 143285527 143285558 -9251701 + AT_rich Low_complexity Low_complexity 1 31 0 6 1678 736 245 95 78 chr5 143285796 143286193 -9251066 + RMER2 LTR ERV1 1 538 -29 6 1678 523 254 222 13 chr5 143286311 143286550 -9250709 + B4 SINE B4 2 290 -2 6 1678 265 276 97 28 chr5 143290227 143290377 -9246882 + L2a LINE L2 3208 3353 -22 6 1678 305 47 0 23 chr5 143290392 143290436 -9246823 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 6 1678 359 286 79 0 chr5 143291698 143291838 -9245421 + L1M2 LINE L1 5540 5690 -610 6 1678 738 227 13 7 chr5 143292225 143292376 -9244883 + RSINE1 SINE B4 3 154 -11 6 1678 1538 244 42 150 chr5 143292475 143293043 -9244216 + RLTR18B LTR ERVK 1 507 -5 6 1678 333 210 37 74 chr5 143293050 143293158 -9244101 - PB1D7 SINE Alu -16 104 1 6 1678 288 235 61 12 chr5 143293391 143293473 -9243786 + MLT1C LTR MaLR 17 102 -365 6 1678 463 310 116 50 chr5 143294846 143295311 -9241948 + L1MD LINE L1 2561 3056 -3090 6 1678 758 298 194 52 chr5 143295302 143295342 -9241917 + L1MD LINE L1 3183 3223 -2923 6 1678 698 161 57 0 chr5 143295342 143295466 -9241793 + B1_Mur2 SINE Alu 2 132 -17 6 1678 429 20 0 0 chr5 143295467 143295517 -9241742 + (TAA)n Simple_repeat Simple_repeat 2 51 0 6 1678 758 298 194 52 chr5 143295517 143296327 -9240932 + L1MD LINE L1 3224 4168 -1978 6 1678 398 101 14 0 chr5 143296327 143296396 -9240863 + (TA)n Simple_repeat Simple_repeat 1 70 0 6 1678 758 298 194 52 chr5 143296396 143296460 -9240799 + L1MD LINE L1 4169 4232 -1914 6 1678 239 241 24 60 chr5 143296460 143296544 -9240715 + ID4 SINE ID 1 81 -2 6 1678 758 298 194 52 chr5 143296544 143296703 -9240556 + L1MD LINE L1 4233 4412 -1734 6 1678 201 108 0 0 chr5 143296732 143296769 -9240490 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 6 1678 259 302 119 52 chr5 143296826 143297095 -9240164 + L1MD LINE L1 4613 4899 -1247 6 1678 1085 85 0 0 chr5 143297229 143297370 -9239889 + B1_Mm SINE Alu 1 141 -6 6 1678 198 0 0 0 chr5 143297380 143297402 -9239857 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1678 959 255 86 74 chr5 143297546 143297721 -9239538 + MTE2a LTR MaLR 18 183 -196 6 1678 4536 125 53 86 chr5 143297721 143298658 -9238601 - RMER17A2 LTR ERVK 0 906 1 6 1678 959 255 86 74 chr5 143298658 143298833 -9238426 + MTE2a LTR MaLR 184 372 -7 6 1678 438 264 77 11 chr5 143298851 143299036 -9238223 - B3A SINE B2 -9 207 5 6 1678 1078 74 0 39 chr5 143299596 143299612 -9237647 - B1_Mus1 SINE Alu 0 148 138 6 1678 306 0 0 0 chr5 143299612 143299646 -9237613 + (TTG)n Simple_repeat Simple_repeat 2 35 0 6 1678 1078 74 0 39 chr5 143299646 143299783 -9237476 - B1_Mus1 SINE Alu -11 137 1 6 1678 1427 219 94 12 chr5 143300185 143300527 -9236732 + ORR1D2 LTR MaLR 1 370 0 6 1678 695 282 50 93 chr5 143300798 143301076 -9236183 + B4A SINE B4 1 266 -26 6 1678 813 324 19 56 chr5 143302361 143302681 -9234578 + Tigger7 DNA MER2_type 23 330 -2161 6 1678 1793 150 38 32 chr5 143303093 143303437 -9233822 + MTC LTR MaLR 1 346 -75 6 1678 513 310 29 12 chr5 143303442 143303615 -9233644 + Tigger7 DNA MER2_type 2292 2467 -24 6 1678 201 74 0 0 chr5 143303720 143303747 -9233512 + (CA)n Simple_repeat Simple_repeat 1 27 0 6 1678 347 284 9 38 chr5 143306310 143306416 -9230843 + BC1_Mm scRNA scRNA 2 104 -48 6 1678 840 219 87 0 chr5 143306556 143306752 -9230507 + B3 SINE B2 3 215 -1 6 1678 241 270 25 63 chr5 143306873 143306952 -9230307 + B3A SINE B2 10 85 -113 6 1678 692 174 17 7 chr5 143306952 143307255 -9230004 + (CA)n Simple_repeat Simple_repeat 1 306 0 7 1678 295 311 65 16 chr5 143307321 143307445 -9229814 + L1MB5 LINE L1 6031 6160 -14 7 1678 270 236 23 40 chr5 143309537 143309651 -9227608 + PB1D7 SINE Alu 22 132 -16 7 1678 309 274 39 10 chr5 143309960 143310063 -9227196 + MLT1C LTR MaLR 238 343 -124 7 1679 452 278 0 0 chr5 143411776 143411891 -9125368 + PB1 SINE Alu 5 119 -8 7 1679 717 278 53 87 chr5 143411902 143412201 -9125058 + B4 SINE B4 4 292 0 7 1679 202 227 0 0 chr5 143412966 143413010 -9124249 - L2b LINE L2 0 3375 3332 7 1679 318 67 0 0 chr5 143413071 143413116 -9124143 + (CA)n Simple_repeat Simple_repeat 2 46 0 7 1679 2238 146 37 40 chr5 143413570 143414026 -9123233 - RMER4A LTR ERVK -11 455 1 7 1679 2369 121 62 3 chr5 143414514 143414904 -9122355 + MTC LTR MaLR 1 413 -8 7 1679 274 0 73 0 chr5 143415504 143415545 -9121714 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 7 1679 911 147 7 0 chr5 143415545 143415681 -9121578 - B1_Mus1 SINE Alu -10 138 2 7 1679 521 165 55 10 chr5 143415712 143415831 -9121428 + B1F2 SINE Alu 1 149 0 7 1679 22 35 0 0 chr5 143415831 143415860 -9121399 + AT_rich Low_complexity Low_complexity 1 29 0 7 1679 1474 282 3 20 chr5 143416247 143416638 -9120621 - RMER1C Other Other -407 935 552 7 1679 710 136 39 180 chr5 143416687 143416893 -9120366 + B2_Mm2 SINE B2 5 181 -14 7 1679 236 176 244 51 chr5 143416941 143417019 -9120240 + PB1D9 SINE Alu 17 109 -11 7 1679 325 310 67 33 chr5 143417282 143417492 -9119767 + RMER15 LTR ERVL 352 568 -7 7 1679 275 366 82 0 chr5 143417727 143417861 -9119398 + MLT1A1 LTR MaLR 264 408 0 7 1679 234 0 0 0 chr5 143418734 143418760 -9118499 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1679 546 195 62 0 chr5 143420534 143420647 -9116612 - B1_Mur1 SINE Alu -7 142 23 7 1679 669 202 0 25 chr5 143420904 143421026 -9116233 - PB1D9 SINE Alu -1 119 1 7 1679 282 248 93 3 chr5 143421090 143421183 -9116076 - B1F2 SINE Alu -21 96 1 7 1679 246 279 73 0 chr5 143421123 143421191 -9116068 - ID_B1 SINE B4 -82 142 70 7 1679 291 318 20 33 chr5 143421460 143421613 -9115646 + L1ME1 LINE L1 5748 5898 -281 7 1679 772 238 30 45 chr5 143421705 143421903 -9115356 - B3A SINE B2 -2 196 2 7 1679 267 157 0 0 chr5 143422166 143422236 -9115023 + (CAGAGA)n Simple_repeat Simple_repeat 1 70 0 7 1679 213 242 61 0 chr5 143422395 143422461 -9114798 - MIRm SINE MIR -111 165 96 7 1679 694 244 67 89 chr5 143422596 143422866 -9114393 + B4 SINE B4 1 264 -28 7 1679 311 270 0 0 chr5 143423059 143423133 -9114126 - Charlie10 DNA MER1_type -1348 1474 1401 7 1679 367 259 181 7 chr5 143423202 143423346 -9113913 - B3A SINE B2 -29 169 1 7 1679 1073 162 42 42 chr5 143423392 143423605 -9113654 + Lx9 LINE L1 7251 7463 -181 7 1679 288 120 0 0 chr5 143423605 143423655 -9113604 + (TATG)n Simple_repeat Simple_repeat 3 52 0 7 1679 594 138 24 16 chr5 143423655 143423780 -9113479 + Lx9 LINE L1 7518 7643 -1 7 1679 791 90 0 0 chr5 143423797 143423908 -9113351 + B1_Mus2 SINE Alu 35 145 -2 7 1679 211 271 41 114 chr5 143423992 143424115 -9113144 - B4 SINE B4 -179 113 1 7 1679 267 246 62 0 chr5 143424137 143424202 -9113057 - Charlie10 DNA MER1_type -2752 70 2 7 1679 1098 155 160 0 chr5 143425606 143425800 -9111459 - URR1B DNA MER1_type 0 225 1 7 1679 297 0 0 0 chr5 143426291 143426324 -9110935 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 7 1679 315 382 8 0 chr5 143426557 143426680 -9110579 + CT-rich Low_complexity Low_complexity 2 125 0 7 1679 334 316 83 31 chr5 143426806 143426999 -9110260 - L1MA6 LINE L1 -101 6199 5997 7 1679 247 313 12 0 chr5 143427123 143427206 -9110053 + MIR SINE MIR 67 150 -58 7 1679 429 230 10 29 chr5 143427583 143427686 -9109573 + PB1D10 SINE Alu 17 117 0 7 1679 1138 230 106 40 chr5 143428263 143428585 -9108674 - MTEb LTR MaLR -3 376 34 7 1679 447 106 0 0 chr5 143428846 143428912 -9108347 + (TG)n Simple_repeat Simple_repeat 1 66 0 7 1679 427 223 43 0 chr5 143429522 143429616 -9107643 + PB1D10 SINE Alu 15 112 -5 7 1679 609 230 53 93 chr5 143429707 143429932 -9107327 + B4A SINE B4 1 216 -76 7 1679 349 324 0 29 chr5 143430002 143430107 -9107152 + B4A SINE B4 191 292 0 7 1679 281 100 20 0 chr5 143430128 143430178 -9107081 + (CA)n Simple_repeat Simple_repeat 1 51 0 7 1679 1156 76 12 0 chr5 143431171 143431342 -9105917 - B2_Mm1t SINE B2 -1 192 20 7 1679 270 0 0 0 chr5 143432772 143432802 -9104457 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 7 1679 3845 40 84 19 chr5 143433187 143433674 -9103585 - MURVY-LTR LTR ERV1 0 519 1 7 1679 524 250 6 0 chr5 143434504 143434664 -9102595 + (TCCA)n Simple_repeat Simple_repeat 2 162 0 7 1679 348 279 48 0 chr5 143435313 143435417 -9101842 - PB1D10 SINE Alu 0 117 9 7 1679 651 169 0 17 chr5 143435604 143435724 -9101535 + B1_Mus2 SINE Alu 29 146 -1 7 1679 246 244 11 22 chr5 143435725 143435782 -9101477 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 7 1679 1225 41 7 0 chr5 143435782 143435928 -9101331 + B1_Mm SINE Alu 1 147 0 7 1679 246 244 11 22 chr5 143435928 143435962 -9101297 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7 1679 222 272 118 88 chr5 143437184 143437316 -9099943 + MIRm SINE MIR 30 148 -120 7 1679 530 261 9 0 chr5 143437835 143437950 -9099309 + PB1D10 SINE Alu 2 117 0 7 1679 864 91 120 8 chr5 143438021 143438154 -9099105 - B1_Mus1 SINE Alu 0 148 1 7 1679 468 0 0 0 chr5 143438265 143438317 -9098942 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 7 1679 434 202 0 92 chr5 143438322 143438431 -9098828 - PB1D7 SINE Alu -19 101 3 7 1679 1505 244 83 30 chr5 143439449 143439509 -9097750 - MTD LTR MaLR 0 419 364 7 1679 3508 30 2 0 chr5 143439509 143439904 -9097355 + MTA_Mm LTR MaLR 1 396 0 7 1679 1505 244 83 30 chr5 143439904 143440241 -9097018 - MTD LTR MaLR -56 363 1 7 1679 672 202 8 16 chr5 143440397 143440518 -9096741 - PB1D9 SINE Alu 0 120 1 7 1679 347 327 5 113 chr5 143440656 143440842 -9096417 - RMER4A LTR ERVK -279 187 22 7 1679 990 178 4 0 chr5 143441430 143441674 -9095585 + GA-rich Low_complexity Low_complexity 1 245 0 7 1679 2589 75 3 0 chr5 143441979 143442301 -9094958 - ORR1A2 LTR MaLR -4 323 1 7 1679 362 356 61 35 chr5 143443252 143443482 -9093777 + B4A SINE B4 57 292 0 7 1679 218 85 42 21 chr5 143445227 143445275 -9091984 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 7 1679 333 297 127 0 chr5 143445548 143445713 -9091546 + ORSL DNA Tip100 65 250 -25 7 1679 226 296 51 101 chr5 143445803 143445961 -9091298 + MIRb SINE MIR 87 236 -32 7 1679 428 271 27 18 chr5 143446196 143446330 -9090929 + ID_B1 SINE B4 83 217 -75 7 1679 339 141 0 0 chr5 143446333 143446397 -9090862 + (CA)n Simple_repeat Simple_repeat 1 64 0 7 1679 468 0 0 0 chr5 143446498 143446550 -9090709 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1679 579 185 46 0 chr5 143446592 143446700 -9090559 - ID_B1 SINE B4 -6 218 106 7 1679 300 287 166 9 chr5 143446728 143446939 -9090320 + MER102c DNA MER1_type 65 297 -34 7 1679 274 242 30 0 chr5 143447086 143447152 -9090107 - ID4 SINE ID -14 69 2 7 1679 483 186 0 0 chr5 143447987 143448084 -9089175 + GA-rich Low_complexity Low_complexity 2 98 0 7 1679 2078 120 102 6 chr5 143448534 143448869 -9088390 - ORR1B2 LTR MaLR 0 367 1 7 1679 360 275 101 0 chr5 143449364 143449473 -9087786 + MER5A1 DNA MER1_type 38 157 -9 7 1679 748 229 62 45 chr5 143450619 143450843 -9086416 + Lx8 LINE L1 7148 7375 -98 7 1679 985 185 77 0 chr5 143451121 143451324 -9085935 - MTD LTR MaLR -21 398 196 7 1679 816 164 17 21 chr5 143451359 143451540 -9085719 + B2_Mm2 SINE B2 1 182 -34 7 1679 393 22 0 0 chr5 143451545 143451591 -9085668 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 7 1679 572 27 14 0 chr5 143451612 143451686 -9085573 + (GA)n Simple_repeat Simple_repeat 2 76 0 7 1679 335 257 68 19 chr5 143451686 143451789 -9085470 - MTD LTR MaLR -304 115 8 7 1679 361 236 22 22 chr5 143451790 143451881 -9085378 + PB1D10 SINE Alu 21 111 -6 7 1679 1117 76 0 14 chr5 143452285 143452432 -9084827 + B1_Mm SINE Alu 3 147 0 7 1679 328 339 78 6 chr5 143452432 143452598 -9084661 + L1MD LINE L1 3107 3284 -2862 7 1679 251 421 0 24 chr5 143452621 143452745 -9084514 + MIRb SINE MIR 71 191 -77 7 1679 578 178 0 36 chr5 143452911 143453022 -9084237 + B1_Mus1 SINE Alu 1 107 -41 7 1679 405 219 13 1 chr5 143453018 143453101 -9084158 + PB1D10 SINE Alu 14 102 -47 7 1679 642 13 0 0 chr5 143453101 143453176 -9084083 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 7 1679 363 223 60 60 chr5 143453176 143453192 -9084067 + B1F1 SINE Alu 103 113 -36 7 1679 214 186 30 119 chr5 143453224 143453266 -9083993 + RSINE1 SINE B4 70 110 -55 7 1679 531 0 0 0 chr5 143453266 143453325 -9083934 + (TC)n Simple_repeat Simple_repeat 1 59 0 7 1679 405 0 0 0 chr5 143453325 143453369 -9083890 + (CA)n Simple_repeat Simple_repeat 1 45 0 7 1679 214 186 30 119 chr5 143453369 143453392 -9083867 + RSINE1 SINE B4 111 129 -36 7 1679 262 269 62 70 chr5 143453387 143453515 -9083744 - RLTR25B LTR ERVK -461 567 441 7 1679 859 131 0 28 chr5 143453408 143453550 -9083709 - B1_Mus1 SINE Alu -5 143 6 7 1679 486 0 0 0 chr5 143454653 143454707 -9082552 + (GA)n Simple_repeat Simple_repeat 1 54 0 7 1679 375 281 60 38 chr5 143455485 143455618 -9081641 - RSINE1 SINE B4 -11 154 19 7 1679 190 250 0 48 chr5 143505693 143505756 -9031503 - MIR SINE MIR -58 150 91 1 1679 771 195 12 25 chr5 143506657 143506820 -9030439 + ID_B1 SINE B4 5 165 -59 2 1679 781 238 175 43 chr5 143507170 143507527 -9029732 + MTE2a LTR MaLR 16 419 0 3 1679 1254 48 0 0 chr5 143507563 143507710 -9029549 + B1_Mm SINE Alu 1 147 0 4 1679 457 219 152 76 chr5 143507719 143507877 -9029382 + B3A SINE B2 27 196 -2 5 1679 421 303 150 34 chr5 143507892 143508271 -9028988 + L1MB7 LINE L1 5570 5992 -192 6 1679 411 56 0 0 chr5 143508293 143508347 -9028912 + (GGGA)n Simple_repeat Simple_repeat 4 57 0 7 1679 582 325 152 36 chr5 143508464 143509195 -9028064 + L1M5 LINE L1 2311 3126 -3020 8 1679 495 231 26 83 chr5 143509205 143509361 -9027898 + RSINE1 SINE B4 19 165 0 9 1679 188 88 59 0 chr5 143509377 143509411 -9027848 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 1 1679 259 230 220 0 chr5 143509421 143509521 -9027738 + L1M5 LINE L1 3217 3338 -2808 8 1679 1154 197 5 19 chr5 143509543 143509750 -9027509 + B3 SINE B2 3 206 -10 1 1679 265 231 72 58 chr5 143509758 143509827 -9027432 + B3A SINE B2 1 70 -128 1 1679 339 267 0 0 chr5 143510400 143510475 -9026784 + RSINE1 SINE B4 2 76 -89 1 1679 1715 231 84 24 chr5 143510649 143511101 -9026158 + RLTR20D LTR ERVK 90 568 0 1 1679 795 205 65 78 chr5 143511348 143511565 -9025694 - ID_B1 SINE B4 -10 214 1 1 1679 182 161 0 0 chr5 143512081 143512112 -9025147 + MIRc SINE MIR 117 147 -121 1 1679 225 180 0 0 chr5 143512313 143512363 -9024896 + CT-rich Low_complexity Low_complexity 2 51 0 1 1679 560 196 84 0 chr5 143513045 143513152 -9024107 + PB1D10 SINE Alu 2 117 0 1 1679 1513 58 26 0 chr5 143513152 143513342 -9023917 + B2_Mm2 SINE B2 1 195 0 1 1679 257 128 0 21 chr5 143513348 143513396 -9023863 + (GAAAA)n Simple_repeat Simple_repeat 3 49 0 2 1679 25 0 0 0 chr5 143516208 143516233 -9021026 + AT_rich Low_complexity Low_complexity 1 25 0 2 1679 201 200 0 39 chr5 143516424 143516476 -9020783 + GA-rich Low_complexity Low_complexity 1 50 0 2 1679 188 79 53 0 chr5 143516644 143516682 -9020577 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1679 237 224 0 0 chr5 143517023 143517081 -9020178 + CT-rich Low_complexity Low_complexity 2 59 0 2 1679 233 306 0 0 chr5 143517422 143517494 -9019765 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1679 396 284 105 33 chr5 143517582 143517735 -9019524 - RSINE1 SINE B4 0 165 2 2 1679 261 289 113 100 chr5 143518777 143518927 -9018332 - RSINE1 SINE B4 -1 164 13 2 1679 339 208 122 56 chr5 143519460 143519567 -9017692 + B1_Mur2 SINE Alu 31 144 -5 2 1679 330 94 15 30 chr5 143519578 143519644 -9017615 + (GGA)n Simple_repeat Simple_repeat 1 65 0 2 1679 682 264 28 11 chr5 143519685 143519861 -9017398 + B3A SINE B2 2 180 -18 3 1679 299 291 23 11 chr5 143519885 143519972 -9017287 + ID_B1 SINE B4 70 157 -67 3 1679 420 20 0 0 chr5 143520144 143520193 -9017066 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 1679 414 301 0 0 chr5 143520661 143521062 -9016197 + (TG)n Simple_repeat Simple_repeat 1 401 0 3 1679 467 250 155 14 chr5 143522043 143522185 -9015074 + RSINE1 SINE B4 3 164 -1 3 1679 278 275 8 0 chr5 143522198 143522465 -9014794 + (CA)n Simple_repeat Simple_repeat 1 269 0 3 1679 404 246 143 18 chr5 143522503 143522615 -9014644 + B3A SINE B2 7 132 -66 3 1679 1218 55 0 0 chr5 143522670 143522815 -9014444 + B1_Mm SINE Alu 1 145 -2 3 1679 1204 173 25 0 chr5 143522861 143523063 -9014196 + B3 SINE B2 1 207 -9 3 1679 401 160 80 0 chr5 143523706 143523781 -9013478 - B1_Mur2 SINE Alu 0 149 69 3 1680 238 305 49 0 chr5 143523916 143523998 -9013261 + LTR16D1 LTR ERVL 344 429 -246 4 1680 210 283 17 0 chr5 143524099 143524159 -9013100 - B4A SINE B4 -231 61 1 4 1680 201 108 0 0 chr5 143525151 143525188 -9012071 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1680 192 170 0 0 chr5 143525480 143525533 -9011726 + T-rich Low_complexity Low_complexity 1 53 0 4 1680 196 168 54 114 chr5 143525536 143525612 -9011647 - MIRc SINE MIR -133 143 66 4 1680 424 283 26 17 chr5 143527023 143527138 -9010121 - PB1D10 SINE Alu -1 116 1 4 1680 323 276 9 93 chr5 143527161 143527269 -9009990 - B1F SINE Alu -17 131 32 4 1680 576 218 131 18 chr5 143528250 143528418 -9008841 + B3A SINE B2 3 189 -9 4 1680 261 0 0 0 chr5 143528418 143528447 -9008812 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1680 610 147 0 0 chr5 143528448 143528543 -9008716 + B1_Mur4 SINE Alu 39 133 -17 4 1680 225 250 19 0 chr5 143528545 143528597 -9008662 + GA-rich Low_complexity Low_complexity 2 54 0 5 1680 840 267 19 10 chr5 143529075 143529283 -9007976 + ID_B1 SINE B4 2 211 -13 5 1680 310 307 11 11 chr5 143529289 143529378 -9007881 - PB1D10 SINE Alu -28 89 1 5 1680 24 0 0 0 chr5 143529378 143529402 -9007857 + AT_rich Low_complexity Low_complexity 1 24 0 5 1680 254 318 0 0 chr5 143529410 143529476 -9007783 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1680 577 289 15 0 chr5 143529515 143529650 -9007609 - RSINE1 SINE B4 -26 139 3 5 1680 225 316 41 21 chr5 143529832 143529929 -9007330 - MER20 DNA MER1_type -57 162 64 5 1680 189 107 0 0 chr5 143529952 143529980 -9007279 + (A)n Simple_repeat Simple_repeat 1 28 0 5 1680 28 0 0 0 chr5 143530017 143530045 -9007214 + AT_rich Low_complexity Low_complexity 1 28 0 5 1680 295 210 122 12 chr5 143530058 143530140 -9007119 - B1_Mur4 SINE Alu 0 150 60 5 1680 432 275 180 0 chr5 143530151 143530340 -9006919 - ID_B1 SINE B4 0 224 2 6 1680 504 32 0 0 chr5 143530877 143530939 -9006320 + (GA)n Simple_repeat Simple_repeat 1 62 0 6 1680 376 254 15 0 chr5 143531039 143531135 -9006124 + B1F SINE Alu 18 120 0 6 1680 201 288 0 0 chr5 143531371 143531451 -9005808 + (TG)n Simple_repeat Simple_repeat 1 80 0 6 1680 333 200 53 0 chr5 143532448 143532523 -9004736 - ID4 SINE ID -4 79 1 6 1680 347 59 20 0 chr5 143532523 143532574 -9004685 - ZP3AR Satellite Satellite -117 95 44 6 1680 433 200 62 75 chr5 143532577 143532723 -9004536 - B1F1 SINE Alu 0 149 6 6 1680 195 42 0 0 chr5 143532743 143532767 -9004492 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6 1680 208 139 0 0 chr5 143532809 143532845 -9004414 + (A)n Simple_repeat Simple_repeat 1 36 0 6 1680 1193 88 60 22 chr5 143534258 143534443 -9002816 + B2_Mm1t SINE B2 1 192 -1 6 1680 377 139 267 7 chr5 143534532 143534618 -9002641 + PB1D10 SINE Alu 8 127 0 7 1680 317 187 0 13 chr5 143535189 143535265 -9001994 + (TGAA)n Simple_repeat Simple_repeat 1 75 0 7 1680 329 347 0 0 chr5 143536534 143536632 -9000627 + (CCCGG)n Simple_repeat Simple_repeat 3 100 0 7 1680 763 84 0 0 chr5 143536649 143536756 -9000503 - B2_Mm2 SINE B2 -88 107 1 7 1680 202 250 0 0 chr5 143536829 143536877 -9000382 + L2c LINE L2 3117 3164 -223 7 1680 267 292 67 58 chr5 143538819 143538939 -8998320 + RSINE1 SINE B4 45 165 0 7 1680 322 350 0 55 chr5 143538967 143539076 -8998183 - B3 SINE B2 0 216 114 7 1680 499 266 0 46 chr5 143539145 143539275 -8997984 + RSINE1 SINE B4 6 129 -36 7 1680 516 59 0 0 chr5 143539307 143539375 -8997884 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1680 414 224 257 49 chr5 143539413 143539596 -8997663 + ID_B1 SINE B4 4 224 0 7 1680 237 159 0 0 chr5 143539611 143539655 -8997604 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1680 514 256 15 23 chr5 143540518 143540650 -8996609 + RSINE1 SINE B4 4 134 -31 8 1680 378 0 0 0 chr5 143540651 143540693 -8996566 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 8 1680 744 324 21 14 chr5 143540726 143541014 -8996245 + B4A SINE B4 3 292 0 8 1680 230 316 49 73 chr5 143541046 143541169 -8996090 - RMER12 LTR ERVK -487 835 716 8 1680 496 229 24 73 chr5 143541118 143541283 -8995976 + MTE2b LTR MaLR 169 325 -54 8 1680 582 114 0 0 chr5 143541283 143541371 -8995888 + (TTCC)n Simple_repeat Simple_repeat 3 90 0 8 1680 378 0 0 0 chr5 143541418 143541460 -8995799 + (CA)n Simple_repeat Simple_repeat 2 43 0 8 1680 282 302 0 65 chr5 143541500 143541546 -8995713 + B4A SINE B4 1 44 -248 8 1680 1398 57 40 6 chr5 143541546 143541722 -8995537 + B2_Mm2 SINE B2 1 182 -13 8 1680 204 40 0 0 chr5 143541722 143541747 -8995512 + (GA)n Simple_repeat Simple_repeat 2 26 0 9 1680 282 302 0 65 chr5 143541747 143541791 -8995468 + B4A SINE B4 45 85 -207 8 1680 626 229 76 8 chr5 143541806 143541938 -8995321 + B1_Mur3 SINE Alu 1 141 -8 9 1680 485 30 30 0 chr5 143541938 143542004 -8995255 + (CATA)n Simple_repeat Simple_repeat 2 69 0 9 1680 300 103 78 0 chr5 143542134 143542250 -8995009 + (CA)n Simple_repeat Simple_repeat 1 125 0 9 1680 1468 54 20 0 chr5 143543319 143543798 -8993461 + ZP3AR Satellite Satellite 1 488 0 9 1680 435 280 82 15 chr5 143544386 143544520 -8992739 + B1_Mur1 SINE Alu 5 147 -2 9 1680 231 36 0 0 chr5 143544740 143544768 -8992491 + (GGGGA)n Simple_repeat Simple_repeat 5 32 0 9 1680 1185 62 0 0 chr5 143545180 143545325 -8991934 + B1_Mm SINE Alu 2 146 -1 9 1680 244 238 147 73 chr5 143545335 143545444 -8991815 + PB1D10 SINE Alu 1 117 0 9 1680 348 307 186 12 chr5 143545456 143545703 -8991556 + B4 SINE B4 1 290 -2 9 1680 306 0 0 0 chr5 143545726 143545760 -8991499 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 1 1680 359 55 0 18 chr5 143545760 143545814 -8991445 + (CA)n Simple_repeat Simple_repeat 1 54 0 1 1680 272 120 0 20 chr5 143545815 143545866 -8991393 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 1 1680 382 344 39 26 chr5 143545898 143546053 -8991206 + RSINE1 SINE B4 9 165 0 1 1680 268 303 11 53 chr5 143546134 143546228 -8991031 + B3 SINE B2 93 182 -34 1 1680 249 40 0 74 chr5 143546234 143546288 -8990971 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1 1680 345 24 0 0 chr5 143546345 143546387 -8990872 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 1 1680 240 122 0 0 chr5 143546988 143547029 -8990230 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 1 1680 639 248 0 8 chr5 143547054 143547184 -8990075 + B1F2 SINE Alu 21 149 0 1 1680 1504 43 22 5 chr5 143547188 143547373 -8989886 + B2_Mm2 SINE B2 4 191 -4 1 1680 302 170 19 0 chr5 143547413 143547466 -8989793 + B1_Mur4 SINE Alu 2 55 -95 1 1680 228 246 49 0 chr5 143547414 143547475 -8989784 + ID_B1 SINE B4 84 147 -77 1 1680 540 158 0 0 chr5 143547475 143547570 -8989689 + (CAGAGA)n Simple_repeat Simple_repeat 1 95 0 1 1680 254 0 0 159 chr5 143547570 143547696 -8989563 + (CAGAG)n Simple_repeat Simple_repeat 5 110 0 1 1680 659 113 19 0 chr5 143547699 143547805 -8989454 + B1_Mur4 SINE Alu 43 150 0 1 1680 348 294 110 63 chr5 143547904 143548031 -8989228 + RSINE1 SINE B4 12 144 -21 1 1680 297 0 0 0 chr5 143548052 143548085 -8989174 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1680 219 263 26 0 chr5 143548102 143548178 -8989081 + RSINE1 SINE B4 88 165 0 1 1680 1594 38 32 0 chr5 143548228 143548414 -8988845 - B2_Mm1t SINE B2 0 193 2 1 1680 553 330 36 36 chr5 143548488 143548711 -8988548 + ID_B1 SINE B4 1 223 -1 1 1680 2434 62 58 0 chr5 143550742 143551051 -8986208 + ORR1A2 LTR MaLR 1 327 0 1 1680 367 298 0 0 chr5 143551065 143551159 -8986100 + ID_B1 SINE B4 111 204 -20 1 1680 213 278 19 0 chr5 143551160 143551214 -8986045 + GA-rich Low_complexity Low_complexity 4 58 0 1 1680 313 255 107 18 chr5 143551226 143551338 -8985921 + RSINE1 SINE B4 13 134 -31 1 1680 277 295 29 109 chr5 143551371 143551508 -8985751 + MT2B LTR ERVL 132 257 -344 1 1680 645 202 0 16 chr5 143551412 143551538 -8985721 + B1_Mus1 SINE Alu 9 132 -16 1 1680 207 0 0 0 chr5 143552036 143552059 -8985200 + (A)n Simple_repeat Simple_repeat 1 23 0 1 1680 270 81 0 0 chr5 143552231 143552268 -8984991 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1680 282 323 40 109 chr5 143552734 143552908 -8984351 + ID_B1 SINE B4 15 176 -48 1 1680 283 273 100 10 chr5 143552828 143552928 -8984331 + PB1D7 SINE Alu 10 118 -2 1 1680 305 209 22 203 chr5 143552936 143553074 -8984185 + MT2B LTR ERVL 139 251 -350 1 1680 595 158 0 73 chr5 143552975 143553098 -8984161 + PB1D9 SINE Alu 6 119 -1 1 1680 571 261 15 8 chr5 143553127 143553258 -8984001 + B1F2 SINE Alu 18 149 0 1 1680 432 0 0 0 chr5 143553393 143553441 -8983818 + (CCCCAG)n Simple_repeat Simple_repeat 1 48 0 1 1680 204 118 0 0 chr5 143554082 143554100 -8983159 + (A)n Simple_repeat Simple_repeat 1 18 0 1 1680 679 109 244 0 chr5 143554100 143554219 -8983040 + B1_Mus1 SINE Alu 1 148 0 1 1680 204 118 0 0 chr5 143554219 143554234 -8983025 + (A)n Simple_repeat Simple_repeat 1 15 0 1 1680 207 0 0 0 chr5 143554281 143554304 -8982955 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1680 231 282 56 14 chr5 143555471 143555543 -8981716 + PB1D7 SINE Alu 41 115 -5 1 1680 228 274 0 0 chr5 143555605 143555656 -8981603 + ID4_ SINE ID 24 74 -9 1 1680 216 0 0 0 chr5 143555658 143555682 -8981577 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1 1680 256 284 72 36 chr5 143556739 143556878 -8980381 + B1F1 SINE Alu 1 144 -5 1 1680 1252 144 23 3 chr5 143556884 143557144 -8980115 + ZP3AR Satellite Satellite 1 265 -1 1 1680 376 218 13 0 chr5 143557144 143557222 -8980037 + ID4 SINE ID 1 79 -4 1 1680 383 305 23 15 chr5 143557366 143557496 -8979763 + MER3 DNA MER1_type 47 177 -32 1 1680 347 245 40 19 chr5 143557787 143557893 -8979366 - B4A SINE B4 -184 108 1 1 1680 534 276 7 15 chr5 143557895 143558031 -8979228 - B1F1 SINE Alu -14 135 1 1 1680 459 264 41 35 chr5 143558452 143558597 -8978662 - B4A SINE B4 -103 189 44 1 1680 231 36 0 0 chr5 143558631 143558659 -8978600 + (A)n Simple_repeat Simple_repeat 1 28 0 1 1680 301 180 0 0 chr5 143558668 143558718 -8978541 - 5S rRNA rRNA -33 88 39 1 1680 650 189 0 8 chr5 143558883 143559006 -8978253 + B1_Mus1 SINE Alu 20 141 -7 1 1680 442 272 156 12 chr5 143559008 143559168 -8978091 + B4 SINE B4 99 281 -11 1 1680 449 326 10 71 chr5 143559756 143559954 -8977305 + MER44D DNA MER2_type 55 240 -465 1 1680 288 260 177 0 chr5 143560050 143560146 -8977113 + ID_B1 SINE B4 110 222 -2 1 1680 183 80 0 0 chr5 143560198 143560223 -8977036 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 1 1680 575 232 49 49 chr5 143560279 143560442 -8976817 + RSINE1 SINE B4 3 165 0 1 1680 1059 62 8 0 chr5 143560483 143560613 -8976646 + B1_Mus1 SINE Alu 2 132 -16 1 1680 310 355 56 82 chr5 143560628 143560669 -8976590 - B4A SINE B4 -32 260 29 1 1680 469 174 123 44 chr5 143560669 143560783 -8976476 - B1_Mus2 SINE Alu -5 142 20 1 1680 475 275 0 0 chr5 143560786 143560895 -8976364 - B3A SINE B2 -89 109 1 1 1680 1121 190 23 14 chr5 143560897 143561116 -8976143 - ID_B1 SINE B4 -2 222 2 1 1680 426 204 54 0 chr5 143561212 143561305 -8975954 + PB1D9 SINE Alu 17 114 -6 1 1680 823 188 6 86 chr5 143561558 143561733 -8975526 + RSINE1 SINE B4 5 165 0 1 1680 334 273 23 0 chr5 143561814 143561902 -8975357 + MIR SINE MIR 31 120 -142 1 1680 315 0 0 0 chr5 143562731 143562766 -8974493 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1680 427 174 500 0 chr5 143562851 143562995 -8974264 + B3 SINE B2 1 216 0 1 1680 242 292 158 110 chr5 143563022 143563149 -8974110 + RSINE1 SINE B4 3 135 -30 1 1680 209 167 19 0 chr5 143563240 143563294 -8973965 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1680 355 178 0 19 chr5 143563349 143563452 -8973807 + (CA)n Simple_repeat Simple_repeat 2 102 0 1 1680 242 264 0 0 chr5 143563469 143563522 -8973737 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1680 280 259 11 90 chr5 143563527 143563616 -8973643 + ID4_ SINE ID 2 83 0 1 1680 219 36 0 0 chr5 143563626 143563654 -8973605 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1 1680 384 261 34 17 chr5 143563657 143563774 -8973485 + PB1D7 SINE Alu 1 119 -1 1 1680 213 267 33 16 chr5 143563896 143563957 -8973302 - ID4 SINE ID 0 83 22 1 1680 221 301 6 144 chr5 143564040 143564207 -8973052 + B1_Mur4 SINE Alu 5 148 -2 1 1680 250 161 172 69 chr5 143564374 143564461 -8972798 + PB1D10 SINE Alu 22 117 0 1 1680 543 203 14 14 chr5 143564466 143564611 -8972648 + GA-rich Low_complexity Low_complexity 4 148 0 1 1680 353 273 135 34 chr5 143564671 143564849 -8972410 - B4A SINE B4 -87 205 10 1 1680 266 280 44 53 chr5 143564824 143564937 -8972322 - B1_Mus1 SINE Alu -3 145 34 1 1680 497 244 235 12 chr5 143565113 143565275 -8971984 + ID_B1 SINE B4 2 199 -25 1 1680 1047 122 0 0 chr5 143565276 143565448 -8971811 + (CA)n Simple_repeat Simple_repeat 2 173 0 1 1680 1157 115 16 42 chr5 143565448 143565639 -8971620 - B2_Mm2 SINE B2 -9 186 1 1 1680 234 0 0 0 chr5 143565833 143565859 -8971400 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1680 340 331 84 81 chr5 143565872 143565896 -8971363 + HAL1 LINE L1 1143 1165 -1342 1 1680 495 211 126 52 chr5 143565896 143566031 -8971228 + B1_Mur2 SINE Alu 1 145 -4 1 1680 340 331 84 81 chr5 143566031 143566302 -8970957 + HAL1 LINE L1 1166 1439 -1068 1 1680 216 307 83 35 chr5 143566317 143566486 -8970773 - MIR SINE MIR -24 238 62 1 1680 282 183 118 35 chr5 143566600 143566685 -8970574 + PB1D9 SINE Alu 13 104 -16 1 1680 244 327 78 19 chr5 143566685 143566788 -8970471 + Lx8 LINE L1 7187 7295 -178 1 1680 715 113 9 0 chr5 143566805 143566911 -8970348 + B2_Mm1t SINE B2 2 108 -85 1 1680 415 252 58 83 chr5 143566913 143567069 -8970190 + B4 SINE B4 70 221 -71 1 1680 897 117 7 0 chr5 143566937 143567074 -8970185 + B1_Mus1 SINE Alu 11 148 0 1 1680 258 0 71 0 chr5 143567724 143567766 -8969493 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 1 1680 728 98 48 24 chr5 143567803 143567928 -8969331 + B1_Mur4 SINE Alu 23 150 0 1 1680 222 351 70 9 chr5 143568012 143568127 -8969132 - MIR SINE MIR -1 261 140 1 1680 753 248 42 42 chr5 143568127 143568342 -8968917 - B3 SINE B2 0 216 2 1 1680 896 129 42 14 chr5 143568407 143568549 -8968710 - B1_Mus2 SINE Alu -1 146 1 1 1680 397 288 75 91 chr5 143568551 143568738 -8968521 - ID_B1 SINE B4 -2 222 39 1 1680 481 164 123 49 chr5 143568783 143568905 -8968354 - B1_Mur1 SINE Alu -7 142 12 1 1680 230 273 159 0 chr5 143568920 143569008 -8968251 + B1F SINE Alu 47 148 -1 1 1680 267 279 15 0 chr5 143569051 143569117 -8968142 + ID_B1 SINE B4 86 152 -72 1 1680 1171 85 0 0 chr5 143569117 143569282 -8967977 + B2_Mm2 SINE B2 3 167 -28 1 1680 239 338 34 34 chr5 143569596 143569743 -8967516 - MIRb SINE MIR -5 263 117 1 1680 303 324 101 9 chr5 143569807 143569916 -8967343 + RSINE1 SINE B4 43 161 -4 2 1680 560 176 0 1 chr5 143569997 143570095 -8967164 + B1_Mur3 SINE Alu 10 106 -43 2 1680 180 0 0 0 chr5 143570095 143570115 -8967144 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2 1680 411 246 0 60 chr5 143570115 143570133 -8967126 + PB1D9 SINE Alu 105 119 -1 2 1680 1496 52 10 25 chr5 143570136 143570333 -8966926 + B2_Mm2 SINE B2 2 195 0 2 1680 270 0 0 0 chr5 143570334 143570364 -8966895 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2 1680 1547 36 4 2 chr5 143570480 143570953 -8966306 - ZP3AR Satellite Satellite -1 473 1 2 1680 223 139 0 0 chr5 143570922 143570958 -8966301 - ID4 SINE ID -40 43 8 2 1680 222 37 0 0 chr5 143571613 143571640 -8965619 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2 1680 254 326 43 0 chr5 143571684 143571776 -8965483 + PB1D10 SINE Alu 22 117 0 2 1680 856 170 13 33 chr5 143571780 143571932 -8965327 + B1_Mur1 SINE Alu 1 149 0 2 1680 399 41 0 0 chr5 143572046 143572095 -8965164 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1680 418 138 11 81 chr5 143572096 143572183 -8965076 - RSINE1 SINE B4 -73 92 12 2 1680 387 0 0 0 chr5 143572186 143572229 -8965030 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1680 266 363 65 40 chr5 143572423 143572776 -8964483 - L1MC4 LINE L1 -152 7890 7529 2 1680 371 335 19 41 chr5 143572963 143573201 -8964058 + L2a LINE L2 3144 3425 -1 2 1680 361 271 73 8 chr5 143573257 143573380 -8963879 + RSINE1 SINE B4 2 132 -33 2 1680 355 84 73 10 chr5 143574047 143574143 -8963116 + (TG)n Simple_repeat Simple_repeat 2 103 0 2 1680 188 348 136 0 chr5 143574472 143574590 -8962669 + MIRc SINE MIR 69 202 -66 2 1680 22 0 0 0 chr5 143575552 143575574 -8961685 + GC_rich Low_complexity Low_complexity 1 22 0 2 1680 180 0 0 0 chr5 143575811 143575831 -8961428 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2 1680 30 0 0 0 chr5 143576380 143576410 -8960849 + AT_rich Low_complexity Low_complexity 1 30 0 2 1680 21 0 0 0 chr5 143577035 143577056 -8960203 + GC_rich Low_complexity Low_complexity 1 21 0 2 1680 180 0 0 0 chr5 143577636 143577656 -8959603 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2 1680 25 0 0 0 chr5 143579126 143579151 -8958108 + GC_rich Low_complexity Low_complexity 1 25 0 2 1680 216 0 0 0 chr5 143579341 143579365 -8957894 + (A)n Simple_repeat Simple_repeat 1 24 0 2 1680 252 0 0 0 chr5 143580613 143580641 -8956618 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1680 193 57 28 28 chr5 143581210 143581246 -8956013 + (GGGAGA)n Simple_repeat Simple_repeat 2 37 0 2 1680 360 0 0 0 chr5 143582515 143582555 -8954704 + (TG)n Simple_repeat Simple_repeat 2 41 0 2 1680 277 239 31 52 chr5 143585701 143585798 -8951461 + B1F1 SINE Alu 55 149 0 2 1680 307 320 15 66 chr5 143585838 143585975 -8951284 + ID_B1 SINE B4 90 219 -5 2 1680 392 260 20 0 chr5 143585983 143586083 -8951176 + RSINE1 SINE B4 1 102 -63 2 1680 432 0 0 0 chr5 143586128 143586176 -8951083 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 1680 387 0 0 0 chr5 143586530 143586573 -8950686 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1680 222 37 0 0 chr5 143586990 143587017 -8950242 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1680 229 193 235 24 chr5 143587296 143587381 -8949878 + RMER15 LTR ERVL 384 486 -89 2 1680 306 243 130 68 chr5 143587407 143587553 -8949706 - B4A SINE B4 -9 283 129 2 1680 2619 90 62 3 chr5 143587946 143588314 -8948945 + ORR1B1 LTR MaLR 2 391 -3 2 1680 703 133 0 0 chr5 143588366 143588471 -8948788 + B1_Mur3 SINE Alu 24 128 -21 2 1680 645 194 0 9 chr5 143588721 143588830 -8948429 - PB1D9 SINE Alu -12 108 1 2 1680 35 0 0 0 chr5 143588837 143588872 -8948387 + AT_rich Low_complexity Low_complexity 1 35 0 2 1680 480 268 15 52 chr5 143588873 143589007 -8948252 - RSINE1 SINE B4 -1 164 36 2 1680 1527 83 0 0 chr5 143589044 143589237 -8948022 - B2_Mm2 SINE B2 -1 194 2 2 1680 468 217 0 32 chr5 143589341 143589527 -8947732 + (TG)n Simple_repeat Simple_repeat 1 180 0 2 1680 563 215 6 0 chr5 143589572 143589749 -8947510 + (TG)n Simple_repeat Simple_repeat 2 179 0 2 1680 431 203 11 22 chr5 143589760 143589941 -8947318 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1680 2397 139 35 141 chr5 143589956 143590259 -8947000 - RMER6B LTR ERVK -3 458 203 2 1680 1074 45 45 0 chr5 143590259 143590392 -8946867 - B1_Mus1 SINE Alu -9 139 1 2 1680 2397 139 35 141 chr5 143590392 143590599 -8946660 - RMER6B LTR ERVK -259 202 2 2 1680 216 0 0 0 chr5 143590599 143590623 -8946636 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1680 320 322 17 6 chr5 143590664 143590836 -8946423 + (TG)n Simple_repeat Simple_repeat 1 174 0 2 1680 495 196 0 10 chr5 143590858 143590956 -8946303 - B3A SINE B2 -100 98 2 2 1680 345 289 41 0 chr5 143590958 143591079 -8946180 - L1MB3 LINE L1 -41 6142 6017 2 1680 599 162 0 27 chr5 143591093 143591277 -8945982 + (CA)n Simple_repeat Simple_repeat 2 180 0 2 1680 496 156 0 15 chr5 143591332 143591462 -8945797 + (CA)n Simple_repeat Simple_repeat 2 129 0 2 1680 317 273 240 0 chr5 143591517 143591638 -8945621 - RSINE1 SINE B4 -6 159 10 2 1680 264 253 0 51 chr5 143591855 143591934 -8945325 + PB1D10 SINE Alu 43 117 0 2 1680 1134 54 7 52 chr5 143591936 143592091 -8945168 + B1_Mus1 SINE Alu 1 148 0 2 1680 1501 72 5 10 chr5 143592123 143592319 -8944940 + B2_Mm2 SINE B2 1 195 0 2 1680 331 304 25 57 chr5 143592465 143592587 -8944672 + PB1D7 SINE Alu 1 118 -2 2 1680 456 32 0 0 chr5 143592595 143592657 -8944602 + ZP3AR Satellite Satellite 44 105 -107 2 1680 2224 117 6 41 chr5 143592712 143592767 -8944492 - ORR1A3 LTR MaLR 0 326 284 2 1680 1575 57 5 0 chr5 143592767 143592959 -8944300 - B2_Mm1t SINE B2 0 193 1 2 1680 2224 117 6 41 chr5 143592959 143593241 -8944018 - ORR1A3 LTR MaLR -43 283 1 2 1680 548 206 113 15 chr5 143593297 143593430 -8943829 + B1_Mus2 SINE Alu 1 146 -1 2 1680 559 292 64 0 chr5 143593446 143593617 -8943642 + B3A SINE B2 1 182 -16 2 1680 1579 52 0 20 chr5 143594422 143594617 -8942642 + B2_Mm1a SINE B2 2 192 -1 2 1680 458 267 33 27 chr5 143595589 143595739 -8941520 - RMER15 LTR ERVL -420 155 5 2 1680 264 295 94 65 chr5 143596029 143596167 -8941092 + MTEb LTR MaLR 231 372 -7 2 1680 212 172 2 144 chr5 143596778 143596861 -8940398 + MIRm SINE MIR 89 162 -46 2 1680 369 0 0 0 chr5 143596874 143596915 -8940344 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1680 278 339 49 41 chr5 143597051 143597174 -8940085 + ID_B1 SINE B4 101 224 0 2 1680 364 324 49 7 chr5 143597178 143597307 -8939952 - Tigger7 DNA MER2_type -2177 314 180 2 1680 596 230 0 28 chr5 143597307 143597450 -8939809 + B1_Mus1 SINE Alu 2 140 -8 2 1680 284 297 31 75 chr5 143597315 143597451 -8939808 + B4A SINE B4 94 220 -72 2 1680 237 108 0 0 chr5 143597451 143597488 -8939771 + (TAA)n Simple_repeat Simple_repeat 2 38 0 2 1680 284 297 31 75 chr5 143597488 143597511 -8939748 + B4A SINE B4 221 245 -47 2 1680 551 211 6 19 chr5 143597511 143597670 -8939589 + GA-rich Low_complexity Low_complexity 3 159 0 2 1680 198 0 0 0 chr5 143597671 143597693 -8939566 + (GAAA)n Simple_repeat Simple_repeat 1 22 0 2 1680 1204 57 0 0 chr5 143597750 143597908 -8939351 + B2_Mm2 SINE B2 1 158 -37 2 1680 297 0 0 0 chr5 143597908 143597941 -8939318 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 1680 705 199 19 64 chr5 143598012 143598168 -8939091 + B1_Mur1 SINE Alu 1 149 0 2 1680 320 222 93 72 chr5 143598243 143598340 -8938919 + ID_B1 SINE B4 113 211 -13 2 1680 1371 62 0 0 chr5 143598341 143598519 -8938740 + (CA)n Simple_repeat Simple_repeat 2 179 0 2 1680 268 312 41 20 chr5 143598523 143598621 -8938638 + PB1D10 SINE Alu 1 100 -17 2 1680 186 43 0 0 chr5 143598967 143598990 -8938269 + (T)n Simple_repeat Simple_repeat 1 23 0 2 1680 606 111 71 0 chr5 143598992 143599091 -8938168 - B1_Mm SINE Alu 0 147 42 2 1680 339 317 0 0 chr5 143599093 143599213 -8938046 + CT-rich Low_complexity Low_complexity 3 122 0 2 1680 192 40 0 0 chr5 143599230 143599255 -8938004 + (CCA)n Simple_repeat Simple_repeat 2 26 0 2 1680 461 178 77 29 chr5 143599259 143599363 -8937896 - PB1D9 SINE Alu -1 119 11 2 1680 279 271 0 59 chr5 143599280 143599382 -8937877 - MT2B LTR ERVL -350 251 156 2 1680 1523 63 16 5 chr5 143599396 143599588 -8937671 - B2_Mm2 SINE B2 0 195 2 2 1680 825 208 46 46 chr5 143599595 143599792 -8937467 - B3A SINE B2 -1 197 1 2 1680 830 281 23 0 chr5 143600091 143600308 -8936951 + ID_B1 SINE B4 3 224 0 2 1680 569 210 169 0 chr5 143600309 143600433 -8936826 + B1_Mm SINE Alu 1 145 -2 2 1680 618 185 28 0 chr5 143600836 143600944 -8936315 - RSINE1 SINE B4 -46 119 9 2 1680 541 255 0 9 chr5 143600944 143601055 -8936204 - PB1D7 SINE Alu -10 110 1 2 1680 504 206 0 0 chr5 143601110 143601241 -8936018 + (TGGA)n Simple_repeat Simple_repeat 1 131 0 2 1680 759 173 0 0 chr5 143601269 143601437 -8935822 + (TGGA)n Simple_repeat Simple_repeat 4 171 0 2 1680 767 179 6 0 chr5 143601466 143601645 -8935614 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 2 1680 445 264 11 0 chr5 143601695 143601962 -8935297 + (TGGA)n Simple_repeat Simple_repeat 1 270 0 2 1680 381 206 0 0 chr5 143602130 143602227 -8935032 + (TGGA)n Simple_repeat Simple_repeat 3 99 0 2 1680 468 0 0 0 chr5 143602314 143602366 -8934893 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1680 498 262 83 84 chr5 143602472 143602799 -8934460 - RMER13A LTR ERVK -222 405 30 2 1680 278 231 11 0 chr5 143602864 143602955 -8934304 + (TGGA)n Simple_repeat Simple_repeat 3 94 0 2 1680 975 59 0 14 chr5 143603729 143603867 -8933392 + B1_Mus1 SINE Alu 12 147 -1 2 1680 1002 129 5 106 chr5 143604534 143604696 -8932563 + B2_Mm2 SINE B2 3 154 -41 2 1680 1238 34 0 20 chr5 143604696 143604845 -8932414 - B1_Mus2 SINE Alu -1 146 1 2 1680 1002 129 5 106 chr5 143604845 143604881 -8932378 + B2_Mm2 SINE B2 155 181 -14 2 1680 308 90 321 18 chr5 143604916 143605028 -8932231 + B2_Mm2 SINE B2 50 195 0 2 1680 335 184 77 26 chr5 143605031 143605109 -8932150 + ID_B1 SINE B4 136 217 -7 2 1680 1281 102 0 0 chr5 143605292 143605310 -8931949 - B2_Mm2 SINE B2 -19 176 159 2 1680 369 0 0 0 chr5 143605310 143605351 -8931908 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 3 1680 1281 102 0 0 chr5 143605351 143605508 -8931751 - B2_Mm2 SINE B2 -37 158 2 2 1680 703 43 0 0 chr5 143605906 143605999 -8931260 - RLTR44D LTR ERVK -393 93 1 3 1680 328 173 115 98 chr5 143606026 143606148 -8931111 + MT2B LTR ERVL 141 264 -337 3 1680 784 129 23 0 chr5 143606049 143606181 -8931078 + B1_Mus2 SINE Alu 11 145 -2 3 1680 378 311 37 68 chr5 143606214 143606376 -8930883 - RSINE1 SINE B4 0 165 9 3 1680 1214 123 27 9 chr5 143606572 143606870 -8930389 - RMER17A LTR ERVK 0 751 550 3 1680 216 342 14 14 chr5 143606888 143606962 -8930297 - ID2 SINE ID -9 74 1 3 1680 1404 101 9 0 chr5 143606951 143607594 -8929665 - ZP3AR Satellite Satellite 0 649 1 3 1680 649 151 171 23 chr5 143607643 143607772 -8929487 - B1_Mur2 SINE Alu -1 148 1 3 1680 415 236 186 0 chr5 143607811 143607967 -8929292 - L1MB3 LINE L1 -125 6046 5854 3 1680 375 186 68 23 chr5 143607977 143608065 -8929194 + ID_B1 SINE B4 131 222 -2 3 1680 1436 80 11 0 chr5 143608088 143608275 -8928984 + B2_Mm1a SINE B2 2 190 -3 3 1680 1009 84 35 0 chr5 143608275 143608416 -8928843 + B1_Mus2 SINE Alu 1 147 0 3 1680 685 200 7 14 chr5 143608555 143608697 -8928562 + B1_Mur1 SINE Alu 2 142 -7 3 1680 705 215 158 21 chr5 143608707 143608887 -8928372 + B3 SINE B2 1 207 -9 3 1680 1190 62 7 0 chr5 143608887 143609032 -8928227 - B1_Mm SINE Alu 0 147 2 3 1680 1482 75 5 0 chr5 143609062 143609249 -8928010 - B2_Mm1t SINE B2 -5 188 1 3 1680 1415 62 28 0 chr5 143609286 143609464 -8927795 - B2_Mm2 SINE B2 -12 183 1 3 1680 21 0 0 0 chr5 143609468 143609489 -8927770 + AT_rich Low_complexity Low_complexity 1 21 0 3 1680 531 242 81 76 chr5 143609534 143609731 -8927528 - B3A SINE B2 0 198 1 3 1680 267 329 11 92 chr5 143609741 143609780 -8927479 + YREP_Mm Unknown Unknown 151 265 -1547 3 1680 625 183 8 16 chr5 143609780 143609902 -8927357 - ID_B1 SINE B4 -1 223 103 3 1680 267 329 11 92 chr5 143609902 143609915 -8927344 + YREP_Mm Unknown Unknown 266 310 -1502 3 1680 182 37 37 0 chr5 143610119 143610146 -8927113 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 3 1680 704 246 120 0 chr5 143610208 143610399 -8926860 + B4 SINE B4 2 215 -77 3 1680 560 27 14 0 chr5 143610400 143610474 -8926785 + (GA)n Simple_repeat Simple_repeat 1 75 0 3 1680 261 300 0 0 chr5 143610900 143610990 -8926269 + GA-rich Low_complexity Low_complexity 2 91 0 3 1680 1609 28 2 2 chr5 143611004 143611471 -8925788 + ZP3AR Satellite Satellite 1 467 0 3 1680 227 229 0 246 chr5 143611412 143611522 -8925737 + ID4 SINE ID 1 83 0 3 1680 570 179 9 0 chr5 143611533 143611645 -8925614 + Lx9 LINE L1 7342 7454 -190 3 1680 262 257 70 9 chr5 143611669 143611783 -8925476 + Lx9 LINE L1 7518 7638 -6 3 1680 511 222 73 7 chr5 143612025 143612161 -8925098 - ID_B1 SINE B4 0 224 80 3 1680 233 200 40 0 chr5 143612325 143612375 -8924884 - Charlie7 DNA MER1_type -2191 421 370 3 1680 1732 159 185 83 chr5 143612576 143612663 -8924596 - MT2A LTR ERVL 0 533 463 3 1680 413 19 0 18 chr5 143612663 143612718 -8924541 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 1680 1732 159 185 83 chr5 143612718 143613110 -8924149 - MT2A LTR ERVL -71 462 5 3 1680 242 301 57 28 chr5 143613195 143613341 -8923918 - MIRm SINE MIR -5 257 108 3 1680 189 147 0 0 chr5 143613959 143613993 -8923266 + (T)n Simple_repeat Simple_repeat 1 34 0 3 1680 1140 101 0 0 chr5 143614882 143615030 -8922229 - B1_Mus1 SINE Alu 0 148 1 3 1680 198 127 0 83 chr5 143615186 143615246 -8922013 + GA-rich Low_complexity Low_complexity 1 55 0 3 1680 562 264 124 5 chr5 143615445 143615647 -8921612 - Lx8 LINE L1 -409 7064 6839 3 1680 318 161 130 54 chr5 143615926 143616018 -8921241 - PB1D9 SINE Alu 0 120 22 3 1680 1079 208 34 0 chr5 143616652 143616859 -8920400 + B3 SINE B2 2 215 -1 3 1680 1217 68 0 0 chr5 143616864 143617011 -8920248 + B1_Mus1 SINE Alu 2 148 0 3 1680 300 244 13 13 chr5 143617052 143617131 -8920128 + B4 SINE B4 2 80 -212 3 1680 293 299 103 0 chr5 143617534 143617631 -8919628 + Tigger7 DNA MER2_type 7 113 -2378 3 1680 1401 88 5 20 chr5 143617655 143617853 -8919406 - B2_Mm2 SINE B2 0 195 1 3 1680 1173 134 32 11 chr5 143617855 143618043 -8919216 - B2_Mm1t SINE B2 0 193 2 3 1680 1098 116 0 0 chr5 143618045 143618191 -8919068 - B1_Mus2 SINE Alu 0 147 2 3 1680 776 234 94 20 chr5 143618196 143618397 -8918862 - B3 SINE B2 0 216 1 3 1680 386 252 24 16 chr5 143618398 143618523 -8918736 - B3 SINE B2 -1 215 90 3 1680 486 0 0 0 chr5 143618736 143618790 -8918469 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1680 563 285 35 71 chr5 143618801 143618844 -8918415 - RSINE1 SINE B4 0 165 124 3 1680 905 167 0 0 chr5 143618844 143618982 -8918277 + B1_Mur4 SINE Alu 1 138 -12 3 1680 195 42 0 0 chr5 143618982 143619006 -8918253 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 3 1680 563 285 35 71 chr5 143619006 143619131 -8918128 - RSINE1 SINE B4 -42 123 3 3 1680 539 230 7 94 chr5 143619166 143619315 -8917944 - B1_Mur1 SINE Alu -7 142 7 3 1680 276 304 88 15 chr5 143620015 143620152 -8917107 + B4 SINE B4 59 205 -87 3 1680 426 226 2 3 chr5 143620049 143620167 -8917092 + PB1D9 SINE Alu 6 127 -23 3 1680 483 175 0 104 chr5 143620208 143620323 -8916936 + PB1D10 SINE Alu 15 117 0 3 1680 192 152 0 0 chr5 143620440 143620473 -8916786 + C-rich Low_complexity Low_complexity 1 33 0 3 1680 219 69 0 0 chr5 143620488 143620517 -8916742 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 1680 330 292 0 0 chr5 143620541 143620613 -8916646 - ID4 SINE ID -11 72 1 3 1680 1490 93 9 0 chr5 143620613 143620926 -8916333 - ZP3AR Satellite Satellite -64 315 1 3 1680 352 233 0 0 chr5 143621403 143621477 -8915782 - B1_Mur4 SINE Alu -21 99 26 3 1680 413 241 61 18 chr5 143621553 143621565 -8915694 - PB1D9 SINE Alu 0 120 109 3 1680 1208 62 0 0 chr5 143621565 143621709 -8915550 - B1_Mus1 SINE Alu 0 148 5 3 1680 449 196 70 30 chr5 143621709 143621810 -8915449 - B1_Mur2 SINE Alu -12 108 2 3 1680 812 85 8 0 chr5 143621822 143621940 -8915319 + (TTCC)n Simple_repeat Simple_repeat 3 121 0 3 1680 704 204 175 24 chr5 143621956 143622122 -8915137 - B3A SINE B2 -5 193 3 3 1680 619 182 11 8 chr5 143622328 143622465 -8914794 + B1_Mur3 SINE Alu 6 150 0 3 1680 983 87 65 0 chr5 143622467 143622605 -8914654 + B1_Mus2 SINE Alu 1 147 0 3 1680 234 0 0 0 chr5 143622607 143622633 -8914626 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 3 1680 1231 46 28 11 chr5 143622687 143622864 -8914395 - B2_Mm2 SINE B2 -6 189 10 3 1680 496 211 229 0 chr5 143623329 143623438 -8913821 - B1_Mm SINE Alu -12 135 2 3 1680 397 313 6 27 chr5 143623497 143623655 -8913604 - B4A SINE B4 -77 147 3 3 1680 438 309 45 35 chr5 143623994 143624192 -8913067 - L1M4 LINE L1 -6305 237 38 3 1680 216 0 0 0 chr5 143624217 143624241 -8913018 + (TTAGGG)n Simple_repeat Simple_repeat 3 26 0 3 1680 1004 143 7 0 chr5 143624324 143624471 -8912788 - B1_Mur4 SINE Alu 0 150 3 3 1680 378 259 25 0 chr5 143624535 143624616 -8912643 - RSINE1 SINE B4 -82 83 1 3 1680 337 339 60 28 chr5 143624757 143625019 -8912240 - L1MC LINE L1 -384 5789 5522 3 1680 231 255 0 18 chr5 143625083 143625139 -8912120 - B4A SINE B4 -8 284 230 3 1680 1034 177 6 0 chr5 143625145 143625320 -8911939 - B3 SINE B2 -27 189 14 3 1680 1262 34 7 0 chr5 143625375 143625521 -8911738 - B1_Mus2 SINE Alu 0 147 1 3 1680 532 298 0 0 chr5 143625533 143625673 -8911586 - B1_Mur1 SINE Alu -7 142 3 3 1680 281 364 81 10 chr5 143625673 143625713 -8911546 - B4 SINE B4 -198 94 41 3 1680 1083 90 28 0 chr5 143625713 143625857 -8911402 - B1_Mus1 SINE Alu 0 148 1 3 1680 281 364 81 10 chr5 143625857 143625892 -8911367 - B4 SINE B4 -252 40 5 3 1680 603 198 40 0 chr5 143625904 143626030 -8911229 - B4A SINE B4 -71 221 91 3 1680 378 0 0 0 chr5 143626039 143626081 -8911178 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 1680 328 185 60 24 chr5 143626098 143626181 -8911078 - B1F2 SINE Alu -22 127 42 3 1680 306 213 236 18 chr5 143626192 143626302 -8910957 - B4 SINE B4 -153 139 6 3 1680 1223 42 0 7 chr5 143626482 143626627 -8910632 - B1_Mus2 SINE Alu 0 147 4 3 1680 222 288 41 0 chr5 143626689 143626762 -8910497 + MIRb SINE MIR 192 267 -1 3 1680 204 200 0 0 chr5 143626944 143626989 -8910270 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1680 395 284 69 14 chr5 143627410 143627599 -8909660 - MTE2a LTR MaLR -16 403 196 3 1680 873 141 28 7 chr5 143627599 143627742 -8909517 - B1_Mm SINE Alu 0 147 2 3 1680 955 172 193 6 chr5 143627764 143627945 -8909314 - B3 SINE B2 0 216 2 3 1680 327 314 31 39 chr5 143628322 143628451 -8908808 + MLT1G3 LTR MaLR 225 352 -243 3 1680 433 269 0 0 chr5 143628449 143628542 -8908717 + ID_B1 SINE B4 130 222 -2 3 1680 267 114 0 0 chr5 143629103 143629147 -8908112 + (CACCC)n Simple_repeat Simple_repeat 4 47 0 3 1680 288 0 0 0 chr5 143629622 143629654 -8907605 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 1680 387 0 0 0 chr5 143629654 143629696 -8907563 + (TC)n Simple_repeat Simple_repeat 1 43 0 3 1680 510 246 43 29 chr5 143629714 143629852 -8907407 - ID_B1 SINE B4 -4 220 81 3 1680 582 288 96 64 chr5 143630336 143630618 -8906641 + B4 SINE B4 2 292 0 3 1680 1146 81 0 7 chr5 143630763 143630912 -8906347 + B1_Mur4 SINE Alu 1 148 -2 3 1680 342 0 0 0 chr5 143630912 143630950 -8906309 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3 1680 327 85 0 0 chr5 143631165 143631212 -8906047 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1680 653 128 43 0 chr5 143631705 143631829 -8905430 - B1_Mur1 SINE Alu -2 148 8 4 1680 1210 48 0 14 chr5 143631829 143631977 -8905282 + B1_Mus2 SINE Alu 2 147 0 4 1680 210 105 0 0 chr5 143631977 143632015 -8905244 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1680 411 200 99 10 chr5 143633028 143633129 -8904130 - ID_B1 SINE B4 -10 214 105 4 1680 244 235 103 0 chr5 143633476 143633544 -8903715 - ID4_ SINE ID 0 83 9 4 1680 586 239 159 11 chr5 143634376 143634558 -8902701 + B3 SINE B2 2 210 -6 4 1680 541 272 195 5 chr5 143634589 143634774 -8902485 + ID_B1 SINE B4 3 222 -2 4 1680 526 266 24 0 chr5 143634801 143634925 -8902334 + ID_B1 SINE B4 96 222 -2 4 1680 793 122 1 10 chr5 143634952 143635087 -8902172 + B1_Mur2 SINE Alu 15 149 0 4 1680 567 253 27 7 chr5 143635530 143635677 -8901582 + B3A SINE B2 49 198 0 4 1680 686 159 119 31 chr5 143635739 143635922 -8901337 - B3 SINE B2 0 195 2 4 1680 787 129 7 29 chr5 143635925 143636061 -8901198 - B1_Mur3 SINE Alu 0 149 17 4 1680 212 0 36 0 chr5 143636063 143636091 -8901168 + (CCA)n Simple_repeat Simple_repeat 2 30 0 4 1680 975 230 4 57 chr5 143636573 143636803 -8900456 - ID_B1 SINE B4 0 224 7 4 1680 381 310 124 20 chr5 143638338 143638539 -8898720 + ID_B1 SINE B4 3 224 0 4 1680 318 128 0 0 chr5 143638880 143638927 -8898332 + B1F SINE Alu 44 90 -59 4 1680 484 271 8 0 chr5 143638941 143639059 -8898200 + ID_B1 SINE B4 100 218 -6 4 1680 230 319 32 129 chr5 143639423 143639461 -8897798 - B1_Mm SINE Alu -4 143 4 4 1680 558 197 128 0 chr5 143639461 143639578 -8897681 - ID_B1 SINE B4 -8 216 85 4 1680 297 0 0 0 chr5 143639604 143639637 -8897622 + (TATG)n Simple_repeat Simple_repeat 4 36 0 4 1680 335 335 73 17 chr5 143639715 143639894 -8897365 - ID_B1 SINE B4 -35 189 1 4 1680 248 235 30 150 chr5 143639902 143640002 -8897257 - PB1D10 SINE Alu -7 110 23 4 1680 219 261 43 0 chr5 143640100 143640169 -8897090 - PB1D7 SINE Alu -26 94 23 4 1680 303 309 12 0 chr5 143640797 143640878 -8896381 - ID4_ SINE ID 0 83 2 4 1680 728 10 40 0 chr5 143641006 143641107 -8896152 + (GA)n Simple_repeat Simple_repeat 2 106 0 4 1680 359 227 47 9 chr5 143642264 143642381 -8894878 - PB1D10 SINE Alu -24 123 6 4 1680 262 281 92 43 chr5 143642600 143642741 -8894518 - B1F SINE Alu -1 148 1 4 1680 407 271 101 34 chr5 143643130 143643279 -8893980 - ID_B1 SINE B4 0 224 66 4 1680 369 189 118 32 chr5 143643286 143643379 -8893880 - PB1D7 SINE Alu 0 127 27 4 1680 321 203 110 142 chr5 143643979 143644134 -8893125 + MTC LTR MaLR 34 183 -238 4 1680 268 250 0 0 chr5 143644118 143644178 -8893081 + MTC LTR MaLR 360 419 0 4 1680 310 264 144 0 chr5 143644364 143644489 -8892770 + ID_B1 SINE B4 81 223 -1 4 1680 284 322 58 17 chr5 143644494 143644614 -8892645 + ID_B1 SINE B4 76 200 -24 4 1680 226 244 195 0 chr5 143644696 143644778 -8892481 + PB1D10 SINE Alu 12 109 -8 4 1680 1593 82 1 12 chr5 143644766 143645239 -8892020 + ZP3AR Satellite Satellite 1 467 0 4 1680 578 159 9 36 chr5 143645314 143645425 -8891834 - B1F2 SINE Alu -6 143 36 4 1680 243 270 53 13 chr5 143645592 143645667 -8891592 - B1F SINE Alu -3 146 69 4 1680 237 215 60 60 chr5 143645594 143645678 -8891581 - ID_B1 SINE B4 -5 219 136 4 1680 357 256 66 35 chr5 143646080 143646261 -8890998 + B4A SINE B4 15 236 -56 4 1680 345 315 26 53 chr5 143646257 143646408 -8890851 + RSINE1 SINE B4 9 155 -10 4 1680 720 229 7 0 chr5 143646432 143646572 -8890687 + B1_Mur1 SINE Alu 2 142 -7 4 1680 1261 164 19 5 chr5 143646607 143646816 -8890443 + B3 SINE B2 5 216 0 4 1680 322 329 56 14 chr5 143648906 143649048 -8888211 + B1F SINE Alu 1 148 -1 4 1680 741 159 79 0 chr5 143649050 143649176 -8888083 + B1_Mus1 SINE Alu 1 136 -12 4 1680 333 0 0 0 chr5 143649176 143649213 -8888046 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 4 1680 430 209 89 15 chr5 143649215 143649350 -8887909 + B3A SINE B2 76 216 0 4 1680 189 0 0 0 chr5 143649354 143649375 -8887884 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 4 1680 833 101 138 0 chr5 143649376 143649514 -8887745 - B2_Mm2 SINE B2 -37 158 2 4 1680 1050 116 14 0 chr5 143649545 143649691 -8887568 - B1_Mur4 SINE Alu -1 149 2 4 1680 526 224 104 0 chr5 143649702 143649827 -8887432 - B1_Mur2 SINE Alu -2 147 10 4 1680 268 161 36 0 chr5 143649863 143649919 -8887340 - PB1D10 SINE Alu -35 82 25 4 1680 527 233 52 15 chr5 143650575 143650710 -8886549 + B4A SINE B4 8 147 -145 4 1680 225 94 0 0 chr5 143650996 143651028 -8886231 + (TCCA)n Simple_repeat Simple_repeat 2 33 0 4 1680 351 0 0 0 chr5 143651048 143651087 -8886172 + (TTCC)n Simple_repeat Simple_repeat 4 42 0 4 1680 485 269 67 0 chr5 143651087 143651206 -8886053 - ID_B1 SINE B4 -14 210 84 4 1680 229 246 23 106 chr5 143651504 143651632 -8885627 - RSINE1 SINE B4 0 165 49 4 1680 688 284 6 6 chr5 143651632 143651795 -8885464 + B3A SINE B2 3 165 -33 4 1680 336 77 0 0 chr5 143651801 143651853 -8885406 + (CA)n Simple_repeat Simple_repeat 2 53 0 4 1680 468 219 0 154 chr5 143651858 143651945 -8885314 + B1_Mur4 SINE Alu 20 102 -48 4 1680 1692 36 0 0 chr5 143651945 143652138 -8885121 - B2_Mm1a SINE B2 0 193 1 4 1680 468 205 0 176 chr5 143652138 143652197 -8885062 + B1_Mur4 SINE Alu 103 143 -7 4 1680 29 60 0 0 chr5 143652197 143652247 -8885012 + AT_rich Low_complexity Low_complexity 1 50 0 4 1680 295 253 27 0 chr5 143652838 143652913 -8884346 + B1_Mur1 SINE Alu 73 149 0 4 1680 421 249 270 40 chr5 143653057 143653283 -8883976 - B4A SINE B4 -10 282 5 4 1680 895 235 61 0 chr5 143653918 143654131 -8883128 + B4A SINE B4 5 230 -62 4 1680 749 199 65 74 chr5 143654132 143654349 -8882910 + B3 SINE B2 2 216 0 4 1680 292 57 38 0 chr5 143654353 143654367 -8882892 + (CAAAAA)n Simple_repeat Simple_repeat 2 15 0 4 1680 1260 48 0 0 chr5 143654367 143654514 -8882745 + B1_Mus2 SINE Alu 1 147 0 4 1680 292 57 38 0 chr5 143654514 143654552 -8882707 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 4 1680 719 161 0 9 chr5 143654557 143654670 -8882589 + PB1D9 SINE Alu 2 113 -7 4 1680 1497 48 5 26 chr5 143654694 143654886 -8882373 + B2_Mm2 SINE B2 2 189 -6 4 1681 405 361 0 0 chr5 143654973 143655092 -8882167 + PB1 SINE Alu 1 119 -8 4 1681 506 292 33 50 chr5 143655478 143655698 -8881561 + B4 SINE B4 2 216 -76 4 1681 227 315 96 35 chr5 143655698 143655813 -8881446 + B4 SINE B4 5 126 -166 4 1681 518 259 26 107 chr5 143655728 143655925 -8881334 + B3A SINE B2 36 216 0 4 1681 285 325 0 12 chr5 143655919 143656003 -8881256 + RSINE1 SINE B4 82 164 -1 4 1681 442 309 13 32 chr5 143656347 143656501 -8880758 + ID_B1 SINE B4 48 198 -26 4 1681 478 309 29 0 chr5 143656387 143656526 -8880733 + B1F SINE Alu 7 149 0 4 1681 187 238 109 16 chr5 143657047 143657111 -8880148 + L2 LINE L2 2995 3064 -355 4 1681 579 117 67 10 chr5 143657255 143657359 -8879900 - B1_Mur2 SINE Alu 0 149 40 4 1681 356 318 29 107 chr5 143657359 143657404 -8879855 - ID_B1 SINE B4 0 223 1 4 1681 609 45 0 6 chr5 143657404 143657497 -8879762 - B2_Mm2 SINE B2 -108 90 1 4 1681 225 256 0 109 chr5 143657503 143657531 -8879728 - BC1_Mm scRNA scRNA -40 112 89 4 1681 246 32 0 0 chr5 143657537 143657568 -8879691 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1681 1265 14 0 33 chr5 143657568 143657713 -8879546 - B1_Mm SINE Alu -6 141 1 4 1681 258 256 0 109 chr5 143657713 143657785 -8879474 - ID4_ SINE ID -64 88 23 4 1681 435 329 20 34 chr5 143657917 143658065 -8879194 + RSINE1 SINE B4 3 148 -17 4 1681 745 273 64 0 chr5 143658146 143658333 -8878926 + ID_B1 SINE B4 1 199 -25 4 1681 374 129 32 0 chr5 143658306 143658368 -8878891 + B1_Mm SINE Alu 64 127 -20 4 1681 26 30 0 0 chr5 143658400 143658433 -8878826 + AT_rich Low_complexity Low_complexity 1 33 0 4 1681 258 331 11 135 chr5 143658750 143658831 -8878428 - RSINE1 SINE B4 -7 158 87 4 1681 1109 43 165 53 chr5 143658831 143659001 -8878258 - B2_Mm2 SINE B2 -6 189 1 4 1681 258 331 11 135 chr5 143659001 143659019 -8878240 - RSINE1 SINE B4 -79 86 72 4 1681 1425 50 60 0 chr5 143659019 143659201 -8878058 - B2_Mm1a SINE B2 0 193 1 4 1681 258 331 11 135 chr5 143659201 143659278 -8877981 - RSINE1 SINE B4 -94 71 3 4 1681 423 314 43 21 chr5 143659285 143659425 -8877834 - B1F1 SINE Alu -4 145 3 4 1681 251 238 37 73 chr5 143659427 143659536 -8877723 + L1MC1 LINE L1 5864 5968 -365 4 1681 238 180 0 57 chr5 143659970 143660023 -8877236 - B3 SINE B2 -165 51 2 4 1681 643 238 165 27 chr5 143660036 143660291 -8876968 + RLTR28B LTR ERVL 17 309 -215 4 1681 452 195 46 0 chr5 143660384 143660471 -8876788 + B1_Mur1 SINE Alu 55 145 -4 4 1681 515 281 36 73 chr5 143660472 143660637 -8876622 + B4 SINE B4 65 223 -69 4 1681 1016 72 0 0 chr5 143660501 143660640 -8876619 + B1_Mus1 SINE Alu 10 148 0 4 1681 247 268 0 27 chr5 143660650 143660723 -8876536 + B3A SINE B2 3 73 -125 4 1681 895 213 52 31 chr5 143660785 143660979 -8876280 - B3 SINE B2 -18 198 1 4 1681 450 328 28 36 chr5 143661050 143661280 -8875979 + L1MC1 LINE L1 6088 6318 -15 4 1681 255 279 0 48 chr5 143661280 143661363 -8875896 - ID4 SINE ID 0 83 5 4 1681 450 328 28 36 chr5 143661363 143661379 -8875880 + L1MC1 LINE L1 6319 6332 -1 4 1681 325 174 28 42 chr5 143661417 143661489 -8875770 + RSINE1 SINE B4 49 119 -46 5 1681 198 71 0 0 chr5 143661490 143661518 -8875741 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1681 724 210 14 7 chr5 143661588 143661732 -8875527 + B1_Mus2 SINE Alu 3 147 0 5 1681 497 280 112 54 chr5 143661764 143661987 -8875272 - B4A SINE B4 -56 236 1 5 1681 264 59 0 0 chr5 143662064 143662098 -8875161 + (T)n Simple_repeat Simple_repeat 1 34 0 5 1681 1200 62 0 0 chr5 143662098 143662244 -8875015 - B1_Mm SINE Alu 0 147 2 5 1681 371 103 43 29 chr5 143662841 143662911 -8874348 - ID_B1 SINE B4 -2 222 152 5 1681 243 0 0 0 chr5 143663078 143663105 -8874154 + (A)n Simple_repeat Simple_repeat 1 27 0 5 1681 650 239 72 7 chr5 143663461 143663600 -8873659 - B1_Mur2 SINE Alu 0 149 2 5 1681 448 276 26 8 chr5 143663686 143663803 -8873456 - ID_B1 SINE B4 -4 220 102 5 1681 243 270 34 0 chr5 143664117 143664206 -8873053 + (TGGA)n Simple_repeat Simple_repeat 1 92 0 5 1681 210 154 0 0 chr5 143665163 143665202 -8872057 + A-rich Low_complexity Low_complexity 1 39 0 5 1681 278 43 0 61 chr5 143665308 143665357 -8871902 + (A)n Simple_repeat Simple_repeat 1 46 0 5 1681 21 0 0 0 chr5 143665358 143665379 -8871880 + AT_rich Low_complexity Low_complexity 1 21 0 5 1681 234 0 0 0 chr5 143667902 143667928 -8869331 + (CCCG)n Simple_repeat Simple_repeat 1 26 0 5 1681 270 81 0 0 chr5 143668565 143668602 -8868657 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1681 599 230 36 15 chr5 143670418 143670555 -8866704 - ID_B1 SINE B4 -4 220 81 5 1681 413 197 19 0 chr5 143670553 143670652 -8866607 - PB1D10 SINE Alu -3 124 18 5 1681 252 0 0 0 chr5 143670759 143670787 -8866472 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1681 468 281 47 20 chr5 143672124 143672273 -8864986 + RSINE1 SINE B4 12 164 -1 5 1681 1419 67 45 0 chr5 143672391 143672569 -8864690 - B2_Mm2 SINE B2 -9 186 1 5 1681 708 194 71 7 chr5 143672602 143672742 -8864517 - B1_Mur4 SINE Alu 0 150 2 5 1681 474 240 29 52 chr5 143672742 143672926 -8864333 - B3A SINE B2 -9 186 11 5 1681 427 165 163 10 chr5 143673033 143673131 -8864128 - RSINE1 SINE B4 -50 115 3 5 1681 224 278 0 0 chr5 143673148 143673202 -8864057 - PB1D7 SINE Alu -5 115 62 5 1681 700 194 18 24 chr5 143673758 143673940 -8863319 + ZP3AR Satellite Satellite 1 180 0 5 1681 748 224 0 7 chr5 143673960 143674104 -8863155 + B1_Mus2 SINE Alu 5 147 0 5 1681 696 159 111 0 chr5 143674268 143674394 -8862865 + B1_Mur2 SINE Alu 7 146 -3 5 1681 23 0 0 0 chr5 143674792 143674815 -8862444 + AT_rich Low_complexity Low_complexity 1 23 0 5 1681 626 224 45 0 chr5 143674820 143674954 -8862305 + B1_Mur1 SINE Alu 10 149 0 5 1681 2106 250 49 36 chr5 143674998 143675587 -8861672 + Lx8 LINE L1 6353 6949 -524 5 1681 723 175 254 12 chr5 143675587 143675760 -8861499 + B3 SINE B2 2 216 0 5 1681 1047 70 35 7 chr5 143675832 143675976 -8861283 - B1_Mus1 SINE Alu 0 148 1 5 1681 260 345 9 35 chr5 143675979 143676093 -8861166 + Lx8 LINE L1 6959 7069 -404 5 1681 411 294 47 40 chr5 143676135 143676284 -8860975 + ID_B1 SINE B4 67 216 -8 5 1681 680 192 15 8 chr5 143676162 143676293 -8860966 + B1_Mur1 SINE Alu 18 149 0 5 1681 299 211 52 21 chr5 143676356 143676453 -8860806 + Lx8 LINE L1 7362 7461 -12 5 1681 737 235 100 20 chr5 143676522 143676722 -8860537 + B3 SINE B2 1 216 0 5 1681 238 297 98 30 chr5 143676777 143676909 -8860350 + B1F SINE Alu 8 148 -1 5 1681 755 281 53 10 chr5 143676916 143677124 -8860135 + ID_B1 SINE B4 2 218 -6 5 1681 358 317 18 42 chr5 143677151 143677319 -8859940 + RSINE1 SINE B4 2 165 0 5 1681 577 214 16 16 chr5 143677379 143677507 -8859752 - B1_Mur1 SINE Alu -21 128 1 5 1681 289 278 20 54 chr5 143677528 143677658 -8859601 + ID4_ SINE ID 3 124 -28 5 1681 1191 62 0 0 chr5 143677670 143677816 -8859443 + B1_Mus2 SINE Alu 2 147 0 5 1681 189 0 0 0 chr5 143677816 143677837 -8859422 + (A)n Simple_repeat Simple_repeat 1 21 0 5 1681 567 235 97 7 chr5 143677841 143677995 -8859264 + B3 SINE B2 48 215 -1 5 1681 811 137 0 44 chr5 143678024 143678161 -8859098 + B1_Mur4 SINE Alu 9 139 -11 5 1681 705 181 8 0 chr5 143678650 143678777 -8858482 - B1_Mur1 SINE Alu 0 149 22 5 1681 1461 168 173 24 chr5 143679164 143679499 -8857760 + MTC-int LTR MaLR 673 1057 -201 5 1681 213 47 22 44 chr5 143679521 143679566 -8857693 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 5 1681 1088 61 0 0 chr5 143679566 143679713 -8857546 - B1_Mus2 SINE Alu 0 147 1 5 1681 529 194 78 0 chr5 143679768 143679871 -8857388 - B3 SINE B2 -86 130 20 5 1681 515 142 35 17 chr5 143679957 143680072 -8857187 - B1_Mur4 SINE Alu 0 150 34 5 1681 261 160 0 0 chr5 143680070 143680120 -8857139 - MTC-int LTR MaLR -540 718 669 5 1681 286 218 75 25 chr5 143680542 143680622 -8856637 + RLTR25B LTR ERVK 426 509 -519 5 1681 769 39 0 28 chr5 143680561 143680655 -8856604 + B1_Mm SINE Alu 44 137 -10 5 1681 360 0 0 0 chr5 143680655 143680695 -8856564 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 5 1681 769 39 0 28 chr5 143680695 143680707 -8856552 + B1_Mm SINE Alu 138 147 0 5 1681 375 148 44 22 chr5 143680723 143680813 -8856446 + MTC-int LTR MaLR 1134 1225 -33 5 1681 1549 199 90 41 chr5 143680837 143681054 -8856205 + MTC LTR MaLR 1 210 -211 5 1681 1456 60 33 0 chr5 143681054 143681238 -8856021 + B2_Mm1a SINE B2 2 191 -2 5 1681 1549 199 90 41 chr5 143681238 143681408 -8855851 + MTC LTR MaLR 211 407 -14 5 1681 741 163 7 60 chr5 143681496 143681646 -8855613 + B1_Mus2 SINE Alu 5 146 -1 5 1681 665 214 88 50 chr5 143681647 143681829 -8855430 + B3 SINE B2 28 216 0 5 1681 1261 112 21 11 chr5 143681829 143682018 -8855241 + B2_Mm1t SINE B2 1 191 -2 5 1681 573 72 0 0 chr5 143682281 143682364 -8854895 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 5 1681 997 153 74 30 chr5 143683259 143683461 -8853798 + B3 SINE B2 1 211 -5 5 1681 335 214 10 110 chr5 143683471 143683571 -8853688 + MT2B LTR ERVL 168 257 -344 5 1681 803 157 0 36 chr5 143683482 143683621 -8853638 + B1_Mur4 SINE Alu 17 150 0 5 1681 609 275 72 39 chr5 143683679 143683887 -8853372 + ID_B1 SINE B4 8 222 -2 5 1681 274 78 54 89 chr5 143683838 143683894 -8853365 + PB1D7 SINE Alu 67 120 0 5 1681 304 326 110 14 chr5 143683947 143684093 -8853166 + RSINE1 SINE B4 4 163 -2 5 1681 573 272 0 52 chr5 143684365 143684520 -8852739 + RSINE1 SINE B4 3 149 -16 5 1681 960 195 99 30 chr5 143684730 143684931 -8852328 + B3 SINE B2 2 216 0 5 1681 597 260 50 40 chr5 143684945 143684963 -8852296 - B3 SINE B2 -4 212 196 5 1681 1259 41 0 0 chr5 143684963 143685108 -8852151 + B1_Mm SINE Alu 1 145 -2 5 1681 631 250 51 23 chr5 143685108 143685289 -8851970 - B3A SINE B2 -21 195 11 5 1681 315 229 113 10 chr5 143685535 143685632 -8851627 + ID_B1 SINE B4 84 190 -34 5 1681 276 229 96 87 chr5 143685632 143685649 -8851610 + PB1D10 SINE Alu 3 117 0 5 1681 1531 44 1 0 chr5 143685652 143686126 -8851133 + ZP3AR Satellite Satellite 1 474 0 5 1681 255 254 0 0 chr5 143686126 143686193 -8851066 + ID4 SINE ID 1 67 -16 5 1681 660 230 0 49 chr5 143686193 143686283 -8850976 + ZP3AR Satellite Satellite 96 177 -35 5 1681 486 46 0 0 chr5 143686620 143686685 -8850574 + (CA)n Simple_repeat Simple_repeat 1 65 0 5 1681 1298 27 0 0 chr5 143686743 143686890 -8850369 + B1_Mm SINE Alu 1 147 0 5 1681 227 278 40 87 chr5 143686992 143687023 -8850236 + PB1D9 SINE Alu 1 115 0 5 1681 317 189 133 0 chr5 143687023 143687113 -8850146 + ID_B1 SINE B4 121 222 -2 5 1681 1082 70 42 0 chr5 143687310 143687452 -8849807 + B1_Mus1 SINE Alu 1 148 0 5 1681 439 272 50 22 chr5 143687454 143687593 -8849666 + ID_B1 SINE B4 80 222 -2 5 1681 299 317 77 0 chr5 143687840 143687944 -8849315 - PB1D10 SINE Alu -5 112 1 5 1681 214 278 99 40 chr5 143688652 143688753 -8848506 - BC1_Mm scRNA scRNA -37 115 9 5 1681 285 194 13 65 chr5 143688686 143688763 -8848496 - ID SINE ID -151 73 1 5 1681 269 319 82 9 chr5 143688770 143688877 -8848382 - PB1D10 SINE Alu -3 124 1 5 1681 420 301 14 7 chr5 143688905 143689052 -8848207 - B1F2 SINE Alu -1 148 1 5 1681 444 256 105 30 chr5 143689062 143689195 -8848064 - B1F SINE Alu -6 143 1 5 1681 245 253 58 35 chr5 143689352 143689438 -8847821 + PB1D10 SINE Alu 6 93 -24 5 1681 706 314 0 22 chr5 143689492 143689717 -8847542 + ID_B1 SINE B4 2 221 -3 5 1681 878 239 23 0 chr5 143689726 143689902 -8847357 + B3A SINE B2 1 180 -18 5 1681 324 140 0 28 chr5 143689977 143690042 -8847217 + PB1D9 SINE Alu 58 140 -7 5 1681 590 196 0 36 chr5 143690070 143690181 -8847078 + PB1D9 SINE Alu 1 107 -13 5 1681 252 0 0 0 chr5 143690184 143690212 -8847047 + (TAA)n Simple_repeat Simple_repeat 3 30 0 5 1681 727 158 56 35 chr5 143690248 143690392 -8846867 - B1_Mur2 SINE Alu -1 148 2 5 1681 464 48 0 0 chr5 143690402 143690464 -8846795 - L1Md_F3 LINE L1 -13 6571 6510 5 1681 21 36 0 0 chr5 143690907 143690935 -8846324 + GC_rich Low_complexity Low_complexity 1 28 0 5 1681 212 278 19 0 chr5 143691161 143691215 -8846044 - PB1D7 SINE Alu -65 55 1 5 1681 221 220 20 20 chr5 143691370 143691421 -8845838 - PB1D10 SINE Alu -3 114 64 5 1681 660 200 48 0 chr5 143691442 143691567 -8845692 - B1_Mus2 SINE Alu 0 147 17 5 1681 340 250 41 89 chr5 143691484 143691607 -8845652 - RLTR25A LTR ERVK -525 578 462 6 1681 290 216 176 0 chr5 143691615 143691689 -8845570 - B1_Mus2 SINE Alu -60 87 1 6 1681 289 253 27 0 chr5 143691712 143691787 -8845472 - B1F SINE Alu -5 144 68 6 1681 258 205 11 124 chr5 143691787 143691800 -8845459 - ID_B1 SINE B4 -4 219 142 6 1681 1606 37 0 5 chr5 143691820 143692009 -8845250 + B2_Mm1a SINE B2 2 189 -4 6 1681 593 208 93 30 chr5 143692011 143692191 -8845068 - B3 SINE B2 0 216 33 6 1681 504 208 65 58 chr5 143692252 143692390 -8844869 + ID_B1 SINE B4 83 221 -3 6 1681 918 115 7 20 chr5 143692489 143692640 -8844619 - URR1A DNA MER1_type 0 226 78 6 1681 486 276 22 50 chr5 143692640 143692661 -8844598 + CYRA11_Mm Unknown Y-chromosome 202 338 -279 6 1681 396 0 0 0 chr5 143692915 143692959 -8844300 + (TCCTG)n Simple_repeat Simple_repeat 3 46 0 6 1681 297 208 42 0 chr5 143693180 143693249 -8844010 + B1F SINE Alu 6 77 -72 6 1681 358 246 102 39 chr5 143693249 143693376 -8843883 + RSINE1 SINE B4 1 135 -30 6 1681 384 174 67 124 chr5 143693384 143693484 -8843775 - PB1D9 SINE Alu -10 110 17 6 1681 513 237 62 41 chr5 143693484 143693629 -8843630 + B1_Mur2 SINE Alu 2 149 0 6 1681 968 231 18 41 chr5 143693752 143693973 -8843286 - B3 SINE B2 0 216 1 6 1681 474 228 134 0 chr5 143694283 143694410 -8842849 + B1F SINE Alu 3 146 -3 6 1681 898 145 13 40 chr5 143694413 143694564 -8842695 + B1_Mus1 SINE Alu 1 147 -1 6 1681 482 301 7 14 chr5 143694580 143694725 -8842534 + RSINE1 SINE B4 3 146 -19 6 1681 486 194 10 0 chr5 143694892 143694990 -8842269 + PB1D10 SINE Alu 6 104 -13 6 1681 342 67 0 0 chr5 143694993 143695038 -8842221 + (CAAA)n Simple_repeat Simple_repeat 3 47 0 6 1681 409 216 72 181 chr5 143695038 143695259 -8842000 + B3A SINE B2 2 198 0 6 1681 1043 110 0 0 chr5 143695269 143695414 -8841845 + B1_Mus1 SINE Alu 3 147 -1 6 1681 1608 37 11 0 chr5 143695431 143695621 -8841638 + B2_Mm1t SINE B2 2 193 0 6 1681 228 67 0 0 chr5 143695647 143695677 -8841582 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1681 1096 131 15 62 chr5 143695685 143695880 -8841379 + B2_Mm2 SINE B2 1 186 -9 6 1681 30 0 0 24 chr5 143695913 143695940 -8841319 + AT_rich Low_complexity Low_complexity 1 27 0 6 1681 1431 70 5 21 chr5 143695940 143696130 -8841129 + B2_Mm1a SINE B2 1 187 -6 6 1681 30 0 0 24 chr5 143696130 143696143 -8841116 + AT_rich Low_complexity Low_complexity 1 13 0 6 1681 835 101 35 42 chr5 143696162 143696306 -8840953 + B1_Mus1 SINE Alu 6 148 0 6 1681 270 0 0 0 chr5 143696309 143696339 -8840920 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1681 1122 52 0 0 chr5 143696349 143696484 -8840775 + B1_Mm SINE Alu 2 136 -11 6 1681 371 21 21 0 chr5 143696484 143696532 -8840727 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 6 1681 1403 82 27 0 chr5 143696539 143696723 -8840536 + B2_Mm2 SINE B2 5 193 -2 6 1681 543 229 38 15 chr5 143696740 143696873 -8840386 - B1_Mur2 SINE Alu -13 136 1 6 1681 258 32 0 0 chr5 143696894 143696925 -8840334 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 6 1681 304 177 212 2 chr5 143696925 143697012 -8840247 - B1F2 SINE Alu -5 115 1 6 1681 647 229 0 0 chr5 143697039 143697170 -8840089 - ID_B1 SINE B4 0 224 94 6 1681 940 145 0 14 chr5 143697201 143697348 -8839911 - B1_Mur1 SINE Alu -3 146 2 6 1681 304 260 87 11 chr5 143697436 143697563 -8839696 - LTR33B LTR ERVL -641 154 15 6 1681 726 194 0 56 chr5 143698315 143698457 -8838802 + B1_Mur2 SINE Alu 3 136 -13 6 1681 368 304 7 126 chr5 143698458 143698601 -8838658 + B4A SINE B4 49 174 -118 6 1681 219 69 0 0 chr5 143698742 143698771 -8838488 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 6 1681 1200 55 7 0 chr5 143698771 143698917 -8838342 - B1_Mus2 SINE Alu 0 147 1 6 1681 1372 104 11 0 chr5 143698917 143699099 -8838160 - B2_Mm2 SINE B2 -9 186 2 6 1681 401 267 20 10 chr5 143699160 143699262 -8837997 - ID_B1 SINE B4 -23 201 99 6 1681 657 208 0 8 chr5 143699279 143699410 -8837849 - B1_Mur4 SINE Alu -2 148 19 6 1681 1379 104 10 15 chr5 143699461 143699657 -8837602 - B2_Mm2 SINE B2 0 195 1 6 1681 315 321 73 0 chr5 143700269 143700378 -8836881 - B4A SINE B4 -175 117 1 6 1681 266 289 10 47 chr5 143700383 143700490 -8836769 - B1F2 SINE Alu -1 119 14 6 1681 354 98 0 0 chr5 143700552 143700603 -8836656 + (TG)n Simple_repeat Simple_repeat 1 51 0 6 1681 264 100 0 0 chr5 143700614 143700654 -8836605 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1681 561 256 188 6 chr5 143700674 143700855 -8836404 - B4A SINE B4 -78 214 1 6 1681 1197 48 7 7 chr5 143700946 143701093 -8836166 - B1_Mus1 SINE Alu 0 148 2 6 1681 500 268 39 0 chr5 143701235 143701362 -8835897 + RSINE1 SINE B4 2 133 -32 6 1681 297 0 0 0 chr5 143701373 143701406 -8835853 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1681 245 297 68 51 chr5 143701438 143701450 -8835809 + ID_B1 SINE B4 80 198 -26 6 1681 508 181 76 0 chr5 143701450 143701555 -8835704 + B1_Mur4 SINE Alu 9 121 -29 6 1681 305 274 46 64 chr5 143701525 143701634 -8835625 - ID_B1 SINE B4 -13 211 105 6 1681 807 179 15 91 chr5 143702094 143702125 -8835134 - B2_Mm2 SINE B2 -13 182 154 6 1681 549 44 0 0 chr5 143702125 143702193 -8835066 + (TCCA)n Simple_repeat Simple_repeat 4 71 0 6 1681 807 179 15 91 chr5 143702193 143702358 -8834901 - B2_Mm2 SINE B2 -42 153 1 6 1681 1168 70 0 0 chr5 143702485 143702628 -8834631 + B1_Mm SINE Alu 4 146 -1 6 1681 939 179 10 35 chr5 143702644 143702846 -8834413 + B3A SINE B2 2 198 0 6 1681 750 101 0 0 chr5 143702857 143702966 -8834293 + (TTCA)n Simple_repeat Simple_repeat 1 109 0 6 1681 528 223 41 0 chr5 143702966 143703087 -8834172 - ID_B1 SINE B4 -12 212 87 6 1681 954 163 0 0 chr5 143703117 143703264 -8833995 - B1_Mur2 SINE Alu 0 149 3 6 1681 708 243 0 142 chr5 143703378 143703418 -8833841 + B3A SINE B2 2 41 -157 6 1681 1710 26 0 0 chr5 143703418 143703610 -8833649 + B2_Mm1a SINE B2 2 193 0 6 1681 708 243 0 142 chr5 143703610 143703780 -8833479 + B3A SINE B2 42 182 -16 6 1681 318 223 16 8 chr5 143703799 143703921 -8833338 + (CA)n Simple_repeat Simple_repeat 2 124 0 6 1681 28 48 0 0 chr5 143703921 143703963 -8833296 + AT_rich Low_complexity Low_complexity 1 42 0 6 1681 240 156 0 22 chr5 143703969 143704015 -8833244 + ZP3AR Satellite Satellite 37 81 -131 6 1681 290 272 209 19 chr5 143704049 143704066 -8833193 - ID_B1 SINE B4 -19 205 82 6 1681 413 161 264 0 chr5 143704066 143704153 -8833106 - B1_Mus1 SINE Alu -38 110 1 6 1681 333 68 0 0 chr5 143704161 143704205 -8833054 + (TCCCC)n Simple_repeat Simple_repeat 4 47 0 6 1681 806 62 18 0 chr5 143704216 143704328 -8832931 + (TTTTC)n Simple_repeat Simple_repeat 3 116 0 6 1681 556 325 42 9 chr5 143704331 143704545 -8832714 - ID_B1 SINE B4 -2 222 2 6 1681 185 0 0 39 chr5 143704699 143704725 -8832534 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 6 1681 288 337 0 10 chr5 143705003 143705105 -8832154 + PB1D10 SINE Alu 1 101 -16 6 1681 747 93 0 0 chr5 143705143 143705250 -8832009 + B1_Mus2 SINE Alu 40 146 -1 6 1681 321 54 54 0 chr5 143705250 143705306 -8831953 + (GA)n Simple_repeat Simple_repeat 1 59 0 6 1681 238 170 18 36 chr5 143705320 143705375 -8831884 + GA-rich Low_complexity Low_complexity 3 56 0 6 1681 1314 66 21 57 chr5 143705443 143705636 -8831623 - B2_Mm2 SINE B2 -8 187 2 6 1681 626 260 53 39 chr5 143705655 143705863 -8831396 - B3 SINE B2 0 216 6 6 1681 538 298 6 12 chr5 143705875 143706048 -8831211 - B3A SINE B2 0 198 27 6 1681 1167 69 7 0 chr5 143706074 143706219 -8831040 - B1_Mus2 SINE Alu 0 147 2 6 1681 238 150 0 0 chr5 143706415 143706455 -8830804 + B3 SINE B2 1 40 -176 6 1681 1171 69 0 0 chr5 143706458 143706602 -8830657 + B1_Mm SINE Alu 4 147 0 6 1681 400 292 40 28 chr5 143706618 143706762 -8830497 + L1MEg LINE L1 3070 3201 -2945 6 1681 563 238 8 0 chr5 143706782 143706908 -8830351 + B3 SINE B2 84 210 -6 6 1681 196 316 53 0 chr5 143707204 143707280 -8829979 + MIR SINE MIR 41 120 -88 6 1681 1005 85 22 11 chr5 143707444 143707622 -8829637 + (TG)n Simple_repeat Simple_repeat 1 180 0 6 1681 610 261 96 6 chr5 143707644 143707810 -8829449 - B3A SINE B2 -16 182 2 6 1681 336 153 42 0 chr5 143707819 143707891 -8829368 - PB1D9 SINE Alu -6 114 40 6 1681 219 258 15 15 chr5 143707924 143707991 -8829268 + (TG)n Simple_repeat Simple_repeat 2 68 0 6 1681 230 318 0 93 chr5 143707997 143708094 -8829165 - B4A SINE B4 -3 289 202 6 1681 533 173 51 158 chr5 143708095 143708253 -8829006 + B1_Mur4 SINE Alu 2 142 -8 6 1681 183 139 0 0 chr5 143708259 143708295 -8828964 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1681 570 304 22 39 chr5 143708295 143708473 -8828786 - B4A SINE B4 -77 215 41 6 1681 433 236 16 0 chr5 143708506 143708598 -8828661 - PB1D10 SINE Alu -12 108 3 6 1681 962 236 19 14 chr5 143708626 143708841 -8828418 + B3 SINE B2 1 216 0 6 1681 829 153 79 14 chr5 143708846 143708985 -8828274 + B1_Mur4 SINE Alu 1 148 -2 6 1681 180 0 0 0 chr5 143709047 143709067 -8828192 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1681 707 270 48 24 chr5 143709085 143709294 -8827965 + B4A SINE B4 63 276 -16 6 1681 308 283 0 71 chr5 143709292 143709391 -8827868 + B4 SINE B4 120 211 -81 7 1681 245 292 0 53 chr5 143709509 143709585 -8827674 + ID_B1 SINE B4 147 218 -6 7 1681 403 284 9 18 chr5 143709587 143709698 -8827561 + PB1D10 SINE Alu 1 110 -7 7 1681 325 184 165 38 chr5 143709700 143709779 -8827480 + PB1D7 SINE Alu 33 121 -6 7 1681 355 250 72 10 chr5 143709782 143709879 -8827380 + RSINE1 SINE B4 3 105 -60 7 1681 306 0 0 0 chr5 143709978 143710012 -8827247 + (TG)n Simple_repeat Simple_repeat 2 35 0 7 1681 213 241 107 60 chr5 143710014 143710098 -8827161 + RSINE1 SINE B4 78 165 0 7 1681 549 171 0 0 chr5 143710101 143710218 -8827041 + (CA)n Simple_repeat Simple_repeat 2 118 0 7 1681 991 133 14 0 chr5 143710247 143710390 -8826869 - B1_Mus1 SINE Alu -2 146 2 7 1681 1196 74 97 0 chr5 143710416 143710591 -8826668 + B2_Mm1t SINE B2 2 193 0 7 1681 677 191 40 0 chr5 143710862 143710988 -8826271 + ID_B1 SINE B4 86 216 -8 7 1681 1202 35 0 14 chr5 143711012 143711150 -8826109 + B1_Mm SINE Alu 2 138 -9 7 1681 279 0 0 0 chr5 143711150 143711181 -8826078 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7 1681 222 291 209 0 chr5 143711634 143711720 -8825539 - B3A SINE B2 -68 130 27 7 1681 848 129 0 160 chr5 143711729 143711904 -8825355 - B1_Mus1 SINE Alu -1 147 1 7 1681 305 293 0 0 chr5 143711945 143712020 -8825239 - B1F1 SINE Alu -74 75 1 7 1681 326 239 72 64 chr5 143712493 143712618 -8824641 + ID_B1 SINE B4 51 176 -48 7 1681 432 219 73 0 chr5 143712532 143712628 -8824631 + PB1D7 SINE Alu 6 108 -12 7 1681 819 201 63 34 chr5 143712666 143712841 -8824418 + B3A SINE B2 1 180 -18 7 1681 252 0 0 0 chr5 143712851 143712879 -8824380 + (CA)n Simple_repeat Simple_repeat 1 28 0 7 1681 282 286 92 0 chr5 143713154 143713252 -8824007 + PB1D10 SINE Alu 3 109 -8 7 1681 186 191 0 0 chr5 143713311 143713353 -8823906 + (TATATG)n Simple_repeat Simple_repeat 2 43 0 7 1681 564 111 0 161 chr5 143713374 143713461 -8823798 - B1_Mus1 SINE Alu -49 99 28 7 1681 1516 44 49 0 chr5 143713461 143713644 -8823615 + B2_Mm1t SINE B2 2 193 0 7 1681 564 111 0 161 chr5 143713644 143713674 -8823585 - B1_Mus1 SINE Alu -121 27 1 7 1681 863 169 233 0 chr5 143713676 143713848 -8823411 - B3 SINE B2 -1 215 4 7 1681 306 297 200 0 chr5 143713853 143714038 -8823221 - ID_B1 SINE B4 0 224 3 7 1681 339 240 73 0 chr5 143714045 143714141 -8823118 - PB1D10 SINE Alu -14 103 1 7 1681 209 208 21 0 chr5 143714208 143714256 -8823003 + G-rich Low_complexity Low_complexity 5 53 0 7 1681 513 211 25 58 chr5 143714315 143714436 -8822823 + PB1D10 SINE Alu 1 117 0 7 1681 670 273 56 73 chr5 143714439 143714531 -8822728 + B4 SINE B4 2 225 -62 7 1681 942 96 7 0 chr5 143714531 143714667 -8822592 + B1_Mus2 SINE Alu 11 147 0 7 1681 486 284 93 47 chr5 143714662 143714876 -8822383 + B4 SINE B4 69 292 0 7 1681 788 249 51 20 chr5 143714933 143715130 -8822129 - B3 SINE B2 0 216 14 7 1681 216 0 0 0 chr5 143715601 143715625 -8821634 + (TG)n Simple_repeat Simple_repeat 2 25 0 7 1681 513 167 0 0 chr5 143715643 143715769 -8821490 + (TCTA)n Simple_repeat Simple_repeat 3 128 0 7 1681 826 230 110 0 chr5 143715810 143716001 -8821258 - ID_B1 SINE B4 -10 214 3 7 1681 1057 75 6 64 chr5 143716127 143716283 -8820976 - B1_Mus2 SINE Alu 0 147 1 7 1681 306 385 6 11 chr5 143716287 143716433 -8820826 - ID_B1 SINE B4 -1 223 80 7 1681 213 65 0 0 chr5 143716433 143716464 -8820795 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 7 1681 306 385 6 11 chr5 143716464 143716493 -8820766 - ID SINE ID -145 79 50 7 1681 619 155 92 15 chr5 143716466 143716597 -8820662 - B1_Mus1 SINE Alu 0 148 8 7 1681 275 204 42 85 chr5 143716503 143716621 -8820638 - MT2B LTR ERVL -337 264 152 7 1681 220 284 35 121 chr5 143716956 143716978 -8820281 + PB1D10 SINE Alu 12 117 0 7 1681 444 196 11 21 chr5 143716978 143717072 -8820187 + ID_B1 SINE B4 132 224 0 7 1681 261 0 0 0 chr5 143717838 143717867 -8819392 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1681 320 214 357 0 chr5 143718129 143718213 -8819046 + PB1D10 SINE Alu 2 115 -2 7 1681 1541 63 5 0 chr5 143718217 143718408 -8818851 + B2_Mm1a SINE B2 1 192 -1 7 1681 183 80 0 0 chr5 143718419 143718444 -8818815 + (GGA)n Simple_repeat Simple_repeat 2 26 0 7 1681 389 259 45 0 chr5 143718467 143718579 -8818680 + PB1D10 SINE Alu 1 117 0 7 1681 1143 86 75 0 chr5 143718602 143718788 -8818471 + ZP3AR Satellite Satellite 2 201 -11 7 1681 264 321 12 0 chr5 143718789 143718870 -8818389 + ID4_ SINE ID 2 83 0 7 1681 410 196 0 10 chr5 143719226 143719329 -8817930 + (TG)n Simple_repeat Simple_repeat 1 102 0 7 1681 295 263 0 50 chr5 143719329 143719409 -8817850 - B4A SINE B4 0 292 217 7 1681 381 211 32 53 chr5 143719415 143719510 -8817749 - RSINE1 SINE B4 0 165 73 7 1681 775 207 14 7 chr5 143719568 143719709 -8817550 - B1_Mur2 SINE Alu -7 142 1 7 1681 475 228 88 0 chr5 143719727 143719863 -8817396 - B3A SINE B2 -36 162 15 7 1681 198 0 0 0 chr5 143720011 143720033 -8817226 + (TG)n Simple_repeat Simple_repeat 2 23 0 7 1681 353 265 49 0 chr5 143720063 143720165 -8817094 - RSINE1 SINE B4 -42 123 17 7 1681 226 254 51 0 chr5 143720172 143720231 -8817028 - PB1D7 SINE Alu -1 119 58 7 1681 395 276 52 52 chr5 143720178 143720312 -8816947 - ID_B1 SINE B4 -7 217 84 7 1681 398 272 0 0 chr5 143720599 143720680 -8816579 - PB1D7 SINE Alu -37 83 3 7 1681 180 185 91 18 chr5 143720695 143720750 -8816509 - MIR SINE MIR -69 139 81 7 1681 473 226 0 0 chr5 143721804 143721897 -8815362 + B1F SINE Alu 48 140 -9 7 1681 341 248 17 133 chr5 143723078 143723102 -8814157 - MT2B LTR ERVL -291 310 241 7 1681 648 189 31 16 chr5 143723102 143723231 -8814028 - B1_Mur2 SINE Alu -8 141 11 7 1681 341 248 17 133 chr5 143723231 143723259 -8814000 - MT2B LTR ERVL -291 240 151 7 1681 184 310 126 50 chr5 143724408 143724506 -8812753 - MIRb SINE MIR -139 129 24 7 1681 360 0 0 0 chr5 143724506 143724546 -8812713 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1681 184 310 126 50 chr5 143724546 143724566 -8812693 - MIRb SINE MIR -245 23 2 7 1681 365 230 11 0 chr5 143726575 143726662 -8810597 - PB1D10 SINE Alu -21 96 9 7 1681 212 267 50 0 chr5 143726610 143726670 -8810589 - B4A SINE B4 -147 145 83 7 1681 666 0 0 0 chr5 143726708 143726782 -8810477 + (TTTTC)n Simple_repeat Simple_repeat 3 76 0 7 1681 417 121 68 0 chr5 143726783 143726877 -8810382 - B1_Mur4 SINE Alu -9 141 10 7 1681 232 211 12 145 chr5 143726844 143726927 -8810332 - ID_B1 SINE B4 -101 123 52 7 1681 780 103 17 25 chr5 143726927 143727046 -8810213 + PB1D9 SINE Alu 3 120 0 7 1681 248 184 82 0 chr5 143727065 143727114 -8810145 - tRNA-Ala-GCY_ tRNA tRNA -21 54 2 7 1681 1583 38 2 0 chr5 143727091 143727327 -8809932 - ZP3AR Satellite Satellite -34 236 1 7 1681 405 0 0 0 chr5 143727386 143727431 -8809828 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1681 642 26 0 0 chr5 143727431 143727506 -8809753 + (GA)n Simple_repeat Simple_repeat 1 76 0 7 1681 242 286 81 89 chr5 143728404 143728527 -8808732 + MT2B LTR ERVL 123 244 -357 7 1681 345 237 62 0 chr5 143728459 143728556 -8808703 + PB1D9 SINE Alu 18 120 0 7 1681 1313 116 21 0 chr5 143728559 143728748 -8808511 + B2_Mm2 SINE B2 3 195 0 7 1681 582 148 0 0 chr5 143728818 143728919 -8808340 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 7 1681 652 129 25 25 chr5 143728941 143729060 -8808199 - B1_Mus1 SINE Alu -25 123 5 7 1681 317 247 202 51 chr5 143729050 143729208 -8808051 + B3 SINE B2 30 211 -5 7 1681 402 21 0 0 chr5 143729387 143729434 -8807825 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1681 289 282 14 14 chr5 143729434 143729506 -8807753 - ID4_ SINE ID -11 72 1 7 1681 185 0 0 39 chr5 143729509 143729535 -8807724 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 7 1681 531 219 15 85 chr5 143729535 143729665 -8807594 - B1F2 SINE Alu -28 121 1 7 1681 375 281 52 0 chr5 143729751 143729847 -8807412 - RSINE1 SINE B4 -61 104 4 7 1681 271 274 57 49 chr5 143729836 143729857 -8807402 - B1F1 SINE Alu -21 128 111 7 1681 237 33 0 0 chr5 143729857 143729887 -8807372 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 7 1681 271 274 57 49 chr5 143729887 143729988 -8807271 - B1F1 SINE Alu -39 110 6 7 1681 317 324 20 0 chr5 143729903 143730005 -8807254 - ID_B1 SINE B4 -54 170 67 7 1681 972 32 19 3 chr5 143730566 143730698 -8806561 - B1_Mus2 SINE Alu -5 142 25 7 1681 374 233 45 91 chr5 143730610 143730742 -8806517 - MT2B LTR ERVL -337 264 139 7 1681 549 200 43 17 chr5 143730868 143730985 -8806274 + PB1D9 SINE Alu 1 120 0 7 1681 602 153 0 30 chr5 143731017 143731118 -8806141 - B1_Mur2 SINE Alu -17 132 35 7 1681 505 310 23 6 chr5 143731118 143731290 -8805969 - B4A SINE B4 -62 230 56 7 1681 266 266 48 48 chr5 143731334 143731417 -8805842 - PB1D7 SINE Alu -10 110 28 7 1681 528 185 0 0 chr5 143732557 143732649 -8804610 - BC1_Mm scRNA scRNA -60 92 1 7 1681 827 141 21 14 chr5 143732715 143732859 -8804400 + B1_Mur4 SINE Alu 6 150 0 7 1681 291 207 0 172 chr5 143733011 143733110 -8804149 - ID2 SINE ID -1 82 1 7 1681 681 92 0 0 chr5 143733110 143733208 -8804051 - ZP3AR Satellite Satellite -64 148 51 7 1681 219 69 0 0 chr5 143733210 143733239 -8804020 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 7 1681 492 175 196 0 chr5 143733244 143733341 -8803918 - B1_Mur3 SINE Alu -29 120 5 7 1681 256 311 14 168 chr5 143733255 143733475 -8803784 - MT2B LTR ERVL -356 245 60 8 1681 340 325 53 0 chr5 143733367 143733481 -8803778 - B1F1 SINE Alu -29 120 1 8 1681 279 238 32 0 chr5 143734133 143734196 -8803063 + C-rich Low_complexity Low_complexity 1 65 0 8 1681 650 252 119 28 chr5 143735051 143735304 -8801955 + B4A SINE B4 2 277 -15 8 1681 353 263 42 10 chr5 143735322 143735418 -8801841 + B1F SINE Alu 18 116 -33 8 1681 1210 41 0 26 chr5 143735458 143735609 -8801650 - B1_Mus2 SINE Alu 0 147 1 8 1681 678 166 110 38 chr5 143735709 143735961 -8801298 - ORR1B1 LTR MaLR -8 321 41 8 1681 536 219 42 28 chr5 143735972 143736133 -8801126 + B3 SINE B2 37 193 -2 8 1681 1450 83 5 15 chr5 143737426 143737621 -8799638 + B2_Mm1t SINE B2 1 193 0 8 1681 208 146 18 35 chr5 143737621 143737678 -8799581 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 8 1681 656 194 158 21 chr5 143737684 143737874 -8799385 - B3 SINE B2 0 216 1 8 1681 538 306 0 59 chr5 143737879 143738098 -8799161 - ID_B1 SINE B4 -5 219 14 8 1681 267 254 120 53 chr5 143738610 143738629 -8798630 + B4A SINE B4 77 218 -74 8 1681 427 237 11 20 chr5 143738629 143738743 -8798516 + B1F2 SINE Alu 8 111 -9 8 1681 294 280 127 58 chr5 143738707 143738912 -8798347 + MT2B2 LTR ERVL 47 265 -319 8 1681 656 80 32 81 chr5 143738826 143738943 -8798316 + B1_Mus2 SINE Alu 24 135 -12 8 1681 218 32 32 0 chr5 143738943 143738974 -8798285 + (CAA)n Simple_repeat Simple_repeat 2 33 0 8 1681 624 91 0 0 chr5 143738984 143739072 -8798187 + (TG)n Simple_repeat Simple_repeat 2 89 0 8 1681 504 226 60 17 chr5 143739524 143739641 -8797618 + RSINE1 SINE B4 44 165 0 8 1681 910 167 0 28 chr5 143739673 143739815 -8797444 + B1_Mur1 SINE Alu 1 138 -11 8 1681 508 294 90 20 chr5 143739865 143740016 -8797243 + B3 SINE B2 2 167 -49 8 1681 198 0 0 0 chr5 143740016 143740038 -8797221 + (TC)n Simple_repeat Simple_repeat 1 22 0 8 1681 375 23 0 0 chr5 143740038 143740081 -8797178 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1681 508 294 90 20 chr5 143740081 143740129 -8797130 + B3 SINE B2 168 215 -1 8 1681 323 247 0 69 chr5 143740180 143740267 -8796992 - ID2 SINE ID -1 82 2 8 1681 440 298 81 67 chr5 143740344 143740628 -8796631 - B4A SINE B4 -1 291 4 8 1681 559 220 121 0 chr5 143740640 143740772 -8796487 - B1_Mur1 SINE Alu 0 149 2 8 1681 324 316 0 0 chr5 143740706 143740782 -8796477 - B4 SINE B4 -140 152 77 8 1681 1168 101 0 6 chr5 143740828 143740997 -8796262 + B2_Mm2 SINE B2 3 170 -25 8 1681 391 214 107 0 chr5 143740991 143741075 -8796184 - B1F SINE Alu -56 93 1 8 1681 925 121 42 7 chr5 143741149 143741291 -8795968 - B1_Mus1 SINE Alu 0 148 2 8 1681 279 308 0 25 chr5 143741293 143741373 -8795886 - ID SINE ID -142 82 5 8 1681 1138 69 6 6 chr5 143741411 143741571 -8795688 + B2_Mm1a SINE B2 1 160 -33 8 1681 210 71 0 0 chr5 143741571 143741599 -8795660 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 8 1681 262 96 0 103 chr5 143741619 143741661 -8795598 + B3A SINE B2 1 38 -160 8 1681 1499 58 11 0 chr5 143741661 143741849 -8795410 + B2_Mm1t SINE B2 1 190 -3 8 1681 262 96 0 103 chr5 143741849 143741864 -8795395 + B3A SINE B2 39 52 -146 8 1681 1239 128 0 22 chr5 143741948 143742131 -8795128 + B2_Mm2 SINE B2 3 181 -14 8 1681 592 277 19 19 chr5 143742139 143742301 -8794958 - RSINE1 SINE B4 -1 164 3 8 1681 674 199 35 21 chr5 143742408 143742552 -8794707 - B1_Mus1 SINE Alu -1 147 2 8 1681 1596 52 5 0 chr5 143742628 143742819 -8794440 + B2_Mm1t SINE B2 1 192 -1 8 1681 300 53 0 0 chr5 143742819 143742857 -8794402 + (GAAA)n Simple_repeat Simple_repeat 1 38 0 8 1681 1126 67 0 0 chr5 143742864 143742999 -8794260 + B1_Mur3 SINE Alu 2 136 -13 8 1681 741 53 0 0 chr5 143743000 143743094 -8794165 + (GAAA)n Simple_repeat Simple_repeat 1 94 0 8 1681 350 222 14 0 chr5 143743122 143743194 -8794065 + ID2 SINE ID 3 75 -8 8 1681 773 127 47 12 chr5 143743205 143743461 -8793798 + (TAGA)n Simple_repeat Simple_repeat 1 265 0 8 1681 243 103 0 0 chr5 143743461 143743500 -8793759 + (GA)n Simple_repeat Simple_repeat 1 39 0 8 1681 303 274 61 61 chr5 143743573 143743705 -8793554 + B1F SINE Alu 2 133 -16 8 1681 426 257 0 45 chr5 143743595 143743705 -8793554 + ID_B1 SINE B4 104 208 -16 8 1681 245 296 63 56 chr5 143743705 143743734 -8793525 - YREP_Mm Unknown Unknown -1514 294 155 8 1681 322 109 0 0 chr5 143744162 143744208 -8793051 - B2_Mm2 SINE B2 -149 46 1 8 1681 372 274 97 9 chr5 143744233 143744347 -8792912 + RSINE1 SINE B4 17 140 -25 8 1681 361 0 41 0 chr5 143744347 143744396 -8792863 + (TG)n Simple_repeat Simple_repeat 1 51 0 8 1681 541 236 9 11 chr5 143744423 143744553 -8792706 - B3A SINE B2 -73 122 1 8 1681 477 0 0 0 chr5 143744577 143744630 -8792629 + (TC)n Simple_repeat Simple_repeat 1 53 0 8 1681 333 0 0 0 chr5 143744630 143744666 -8792593 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1681 546 158 210 42 chr5 143744738 143744857 -8792402 - B1_Mur4 SINE Alu -7 143 5 8 1681 218 337 12 0 chr5 143744880 143744963 -8792296 + PB1D10 SINE Alu 23 106 -11 8 1681 551 85 0 12 chr5 143745121 143745204 -8792055 + (TCTCCC)n Simple_repeat Simple_repeat 4 85 0 8 1681 258 362 78 8 chr5 143745227 143745355 -8791904 - B4A SINE B4 -155 137 1 8 1681 618 252 0 21 chr5 143745358 143745500 -8791759 - B1F2 SINE Alu -10 139 1 8 1681 288 176 135 0 chr5 143745503 143745577 -8791682 - B1_Mus2 SINE Alu -1 146 63 8 1681 1448 38 18 0 chr5 143745578 143745907 -8791352 + ZP3AR Satellite Satellite 1 335 -1 8 1681 271 259 11 23 chr5 143745887 143745974 -8791285 - PB1D9 SINE Alu -34 86 1 8 1681 226 265 0 42 chr5 143745911 143745982 -8791277 - B4 SINE B4 -145 147 80 8 1681 288 53 0 0 chr5 143746381 143746419 -8790840 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 8 1681 557 216 8 17 chr5 143746420 143746538 -8790721 + PB1D10 SINE Alu 1 117 0 8 1681 214 294 0 0 chr5 143746539 143746590 -8790669 + ID SINE ID 8 58 -166 8 1681 644 193 18 0 chr5 143746577 143746691 -8790568 - B1_Mur2 SINE Alu -27 122 7 8 1681 352 275 52 60 chr5 143746592 143746708 -8790551 - B4 SINE B4 -97 195 81 8 1681 233 239 75 0 chr5 143746704 143746771 -8790488 - PB1D10 SINE Alu 0 117 46 8 1681 245 159 0 0 chr5 143746893 143746937 -8790322 - ZP3AR Satellite Satellite -145 67 24 8 1681 227 246 16 0 chr5 143746951 143747012 -8790247 - B1F SINE Alu -6 143 82 8 1681 1545 25 11 0 chr5 143747045 143747463 -8789796 + ZP3AR Satellite Satellite 1 422 -1 8 1681 277 304 44 97 chr5 143747884 143747997 -8789262 - B1F SINE Alu -1 148 10 8 1681 406 258 0 139 chr5 143748065 143748209 -8789050 - B1F SINE Alu -5 144 21 8 1681 1070 88 0 0 chr5 143748412 143748548 -8788711 + B1_Mus2 SINE Alu 1 136 -11 8 1681 216 0 0 0 chr5 143748548 143748572 -8788687 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 8 1681 1190 35 21 0 chr5 143748796 143748940 -8788319 + B1_Mm SINE Alu 1 147 0 8 1681 186 71 0 0 chr5 143748940 143748968 -8788291 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8 1681 1028 132 0 0 chr5 143749008 143749152 -8788107 - B1_Mus1 SINE Alu 0 148 5 8 1681 354 288 114 57 chr5 143749337 143749477 -8787782 - B1_Mur1 SINE Alu -1 148 1 8 1681 367 266 11 0 chr5 143749519 143749613 -8787646 - RSINE1 SINE B4 -3 162 68 8 1681 414 186 262 10 chr5 143749627 143749730 -8787529 - B1F2 SINE Alu -16 133 5 8 1681 348 222 42 0 chr5 143749808 143749880 -8787379 - B4 SINE B4 -194 98 24 8 1681 427 271 25 33 chr5 143749910 143750032 -8787227 - B1_Mur1 SINE Alu -28 121 1 8 1681 1671 37 0 0 chr5 143750535 143750726 -8786533 + B2_Mm1a SINE B2 1 191 -2 8 1681 677 260 110 24 chr5 143750793 143751002 -8786257 + B4A SINE B4 1 227 -65 8 1681 570 177 112 8 chr5 143751007 143751132 -8786127 + B1_Mus1 SINE Alu 11 148 0 8 1681 737 184 13 54 chr5 143751139 143751288 -8785971 + B1_Mur4 SINE Alu 7 149 -1 8 1681 269 295 39 0 chr5 143751420 143751498 -8785761 + B1_Mus2 SINE Alu 2 82 -65 8 1681 601 161 60 35 chr5 143755732 143755848 -8781411 + PB1D9 SINE Alu 2 120 0 8 1681 1090 74 7 0 chr5 143755850 143755998 -8781261 + B2_Mm2 SINE B2 1 149 -46 8 1681 624 210 48 0 chr5 143756192 143756316 -8780943 + ID_B1 SINE B4 88 217 -7 8 1681 348 290 32 0 chr5 143756417 143756510 -8780749 - PB1D7 SINE Alu -6 114 19 8 1681 550 86 24 36 chr5 143757100 143757217 -8780042 + B1_Mus2 SINE Alu 11 147 0 8 1681 207 0 0 0 chr5 143757258 143757281 -8779978 + (CAAA)n Simple_repeat Simple_repeat 1 23 0 8 1681 336 209 69 11 chr5 143757316 143757403 -8779856 + PB1D9 SINE Alu 21 112 -8 8 1681 549 0 0 0 chr5 143757552 143757613 -8779646 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 8 1681 1237 35 0 0 chr5 143757613 143757754 -8779505 - B1_Mm SINE Alu -6 141 1 8 1681 412 219 208 16 chr5 143757757 143757882 -8779377 - B1_Mur3 SINE Alu 0 149 1 8 1681 1048 172 77 48 chr5 143757890 143757938 -8779321 - B3 SINE B2 -1 215 168 8 1681 565 26 12 25 chr5 143757938 143758018 -8779241 + (CATAT)n Simple_repeat Simple_repeat 3 81 0 9 1681 1048 172 77 48 chr5 143758018 143758177 -8779082 - B3 SINE B2 -49 167 3 8 1681 313 172 241 0 chr5 143758185 143758272 -8778987 - PB1D10 SINE Alu 0 117 10 9 1681 503 319 7 0 chr5 143758464 143758599 -8778660 + ID_B1 SINE B4 84 219 -5 9 1681 273 223 143 26 chr5 143760288 143760379 -8776880 + MTD LTR MaLR 1 101 -320 9 1681 243 0 0 0 chr5 143760629 143760656 -8776603 + (CA)n Simple_repeat Simple_repeat 2 28 0 9 1681 579 223 140 25 chr5 143760666 143760838 -8776421 + B3A SINE B2 9 198 0 9 1681 198 0 0 0 chr5 143760838 143760860 -8776399 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 9 1681 674 167 94 16 chr5 143760862 143760990 -8776269 + B1F2 SINE Alu 2 139 -10 9 1681 436 226 69 132 chr5 143760990 143761003 -8776256 + B2_Mm2 SINE B2 175 185 -10 9 1681 520 213 95 47 chr5 143761004 143761023 -8776236 + ID_B1 SINE B4 70 222 0 9 1681 883 87 55 0 chr5 143761023 143761150 -8776109 + B1_Mus1 SINE Alu 15 148 0 9 1681 579 257 21 7 chr5 143761181 143761322 -8775937 + B1_Mur1 SINE Alu 2 144 -5 9 1681 264 246 14 55 chr5 143761381 143761454 -8775805 - MTD LTR MaLR -319 100 31 9 1681 252 324 13 25 chr5 143761594 143761736 -8775523 + ID4_ SINE ID 1 136 -16 9 1681 391 177 198 50 chr5 143763668 143763769 -8773490 - B1_Mur2 SINE Alu 0 149 34 9 1681 192 40 0 0 chr5 143763927 143763952 -8773307 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 9 1681 280 132 57 0 chr5 143763954 143764007 -8773252 - B1_Mur3 SINE Alu -13 136 81 9 1681 401 189 196 21 chr5 143764001 143764098 -8773161 + B1_Mur2 SINE Alu 36 149 0 9 1681 665 276 44 35 chr5 143764162 143764365 -8772894 - ID_B1 SINE B4 0 224 20 9 1681 278 323 30 10 chr5 143764433 143764533 -8772726 + B3A SINE B2 9 110 -88 9 1681 252 0 0 0 chr5 143764818 143764846 -8772413 + (CACG)n Simple_repeat Simple_repeat 4 31 0 9 1681 367 176 319 0 chr5 143764925 143765016 -8772243 + PB1D7 SINE Alu 1 120 0 9 1681 359 279 0 0 chr5 143765037 143765116 -8772143 + ID4_ SINE ID 2 80 -3 9 1681 406 232 42 10 chr5 143765175 143765271 -8771988 - PB1D7 SINE Alu -5 115 17 9 1681 189 0 0 0 chr5 143765307 143765328 -8771931 + (TTA)n Simple_repeat Simple_repeat 2 22 0 9 1681 1228 48 0 7 chr5 143765328 143765475 -8771784 - B1_Mus2 SINE Alu -1 146 1 9 1681 326 119 99 18 chr5 143765506 143765617 -8771642 + CT-rich Low_complexity Low_complexity 1 120 0 9 1681 441 236 75 0 chr5 143765617 143765723 -8771536 - PB1D9 SINE Alu -1 119 6 9 1681 269 314 0 44 chr5 143765645 143765735 -8771524 - B4 SINE B4 -127 165 80 9 1681 272 224 119 0 chr5 143765780 143765847 -8771412 - ID4_ SINE ID -7 76 2 9 1681 218 238 14 87 chr5 143766067 143766136 -8771123 - ID4_ SINE ID -7 76 13 9 1681 2213 99 63 17 chr5 143766376 143766727 -8770532 + IAPLTR1_Mm LTR ERVK 1 367 0 9 1681 3990 90 18 89 chr5 143766727 143767432 -8769827 + IAPEz-int LTR ERVK 8 662 -5819 9 1681 445 66 0 32 chr5 143767432 143767495 -8769764 + IAPEz-int LTR ERVK 1359 1419 -5062 9 1681 1690 123 4 15 chr5 143767484 143767749 -8769510 + IAPEz-int LTR ERVK 2236 2497 -5183 9 1681 888 88 24 0 chr5 143767744 143767869 -8769390 + IAPEz-int LTR ERVK 4783 4910 -2770 9 1681 24850 19 10 0 chr5 143767869 143770796 -8766463 + IAPEz-int LTR ERVK 3525 6478 -3 9 1681 2213 99 63 17 chr5 143770800 143771151 -8766108 + IAPLTR1_Mm LTR ERVK 1 367 0 9 1681 1204 88 0 6 chr5 143772034 143772205 -8765054 - B2_Mm2 SINE B2 -23 172 3 9 1681 588 259 36 7 chr5 143773196 143773336 -8763923 - RSINE1 SINE B4 -19 146 3 9 1681 683 210 216 23 chr5 143773382 143773553 -8763706 - B3 SINE B2 -12 204 1 9 1681 573 213 293 18 chr5 143773577 143773744 -8763515 - B3 SINE B2 -3 213 1 9 1681 778 181 43 7 chr5 143773755 143773894 -8763365 - B1_Mur4 SINE Alu -6 144 1 9 1681 238 284 15 0 chr5 143774208 143774275 -8762984 - RSINE1 SINE B4 -8 157 90 9 1681 660 279 70 20 chr5 143774681 143774882 -8762377 + B3 SINE B2 5 215 -1 9 1681 1162 68 7 0 chr5 143774900 143775046 -8762213 + B1_Mus2 SINE Alu 1 147 0 9 1681 282 157 329 0 chr5 143775140 143775210 -8762049 - PB1D10 SINE Alu -1 116 24 9 1681 201 158 0 50 chr5 143775231 143775253 -8762006 + T-rich Low_complexity Low_complexity 17 38 0 9 1681 1263 34 0 0 chr5 143775253 143775399 -8761860 - B1_Mus2 SINE Alu 0 147 2 9 1681 201 158 0 50 chr5 143775399 143775416 -8761843 + T-rich Low_complexity Low_complexity 1 16 0 9 1681 848 245 24 9 chr5 143775445 143775655 -8761604 - B3 SINE B2 -3 213 1 9 1681 313 311 41 32 chr5 143775659 143775782 -8761477 - ID_B1 SINE B4 -11 213 90 9 1681 563 157 9 36 chr5 143775823 143775935 -8761324 - B1_Mur3 SINE Alu -14 135 27 9 1681 932 239 35 0 chr5 143775970 143776167 -8761092 - B3 SINE B2 -12 204 1 9 1681 633 173 13 125 chr5 143776185 143776223 -8761036 - B1_Mur3 SINE Alu -2 147 13 9 1681 435 272 9 159 chr5 143776223 143776337 -8760922 - ID_B1 SINE B4 -21 203 94 9 1681 1241 54 0 0 chr5 143776337 143776484 -8760775 + B1_Mus2 SINE Alu 1 147 0 9 1681 435 272 9 159 chr5 143776484 143776583 -8760676 - ID_B1 SINE B4 -131 93 22 9 1681 463 226 11 0 chr5 143776770 143776863 -8760396 - PB1D10 SINE Alu -7 110 17 9 1681 226 253 208 10 chr5 143777039 143777135 -8760124 - PB1D10 SINE Alu 0 117 3 9 1681 365 327 138 0 chr5 143777650 143777809 -8759450 + MIRb SINE MIR 19 199 -69 9 1681 473 211 55 0 chr5 143778576 143778685 -8758574 - B1_Mur1 SINE Alu -6 143 29 9 1681 293 273 71 64 chr5 143778685 143778717 -8758542 - B4 SINE B4 -72 220 79 9 1681 1098 75 0 45 chr5 143778785 143778939 -8758320 - B1_Mus2 SINE Alu 0 147 1 9 1681 630 169 195 0 chr5 143778983 143779101 -8758158 + B1_Mus1 SINE Alu 2 142 -6 9 1681 430 234 53 0 chr5 143779473 143779567 -8757692 - B1_Mur1 SINE Alu -25 124 26 9 1681 246 32 0 0 chr5 143779588 143779619 -8757640 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9 1681 1037 243 4 18 chr5 143779636 143779862 -8757397 + B4A SINE B4 2 224 -68 9 1681 300 261 67 11 chr5 143779890 143779979 -8757280 + RSINE1 SINE B4 31 124 -41 9 1681 320 225 0 82 chr5 143780022 143780119 -8757140 + MT2B LTR ERVL 169 257 -344 9 1681 738 144 16 0 chr5 143780036 143780161 -8757098 + B1_Mus1 SINE Alu 19 145 -3 9 1681 540 277 23 0 chr5 143780161 143780291 -8756968 - B1_Mur1 SINE Alu -12 137 5 9 1681 405 279 79 29 chr5 143780319 143780459 -8756800 - B3 SINE B2 -5 211 65 9 1681 1585 173 130 0 chr5 143780473 143780820 -8756439 + MTC LTR MaLR 13 404 -17 9 1681 247 299 30 0 chr5 143781078 143781145 -8756114 + ID4 SINE ID 2 70 -13 9 1681 318 249 291 17 chr5 143781196 143781437 -8755822 - L1M4c LINE L1 -4918 1466 1160 9 1681 771 263 14 43 chr5 143781470 143781677 -8755582 - B3 SINE B2 -6 210 10 9 1681 823 275 52 0 chr5 143781690 143781901 -8755358 - ID_B1 SINE B4 0 224 3 9 1681 356 261 39 101 chr5 143782102 143782124 -8755135 - B4A SINE B4 -47 245 147 9 1681 849 139 14 0 chr5 143782124 143782268 -8754991 - B1_Mur4 SINE Alu -1 149 4 9 1681 356 261 39 101 chr5 143782268 143782281 -8754978 - B4A SINE B4 -47 146 78 9 1681 1374 95 11 0 chr5 143782351 143782541 -8754718 - B2_Mm1t SINE B2 0 193 2 9 1681 805 176 14 27 chr5 143783312 143783458 -8753801 + B1_Mur3 SINE Alu 2 145 -4 9 1681 186 43 0 0 chr5 143783492 143783515 -8753744 + (CAA)n Simple_repeat Simple_repeat 2 24 0 9 1681 192 40 0 0 chr5 143784118 143784143 -8753116 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1681 1615 37 0 5 chr5 143784153 143784342 -8752917 - B2_Mm1a SINE B2 -4 189 2 9 1681 213 121 0 0 chr5 143784562 143784595 -8752664 + (T)n Simple_repeat Simple_repeat 1 33 0 9 1681 279 238 78 19 chr5 143784684 143784787 -8752472 + PB1D9 SINE Alu 1 109 -11 9 1681 372 94 0 0 chr5 143785012 143785065 -8752194 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1681 414 302 48 0 chr5 143785253 143785379 -8751880 - B1_Mur4 SINE Alu -5 145 14 9 1682 1704 31 0 0 chr5 143786219 143786412 -8750847 + B2_Mm1t SINE B2 1 193 0 9 1682 857 230 29 24 chr5 143786457 143786662 -8750597 + B3 SINE B2 1 206 -10 9 1682 236 213 0 128 chr5 143786902 143786988 -8750271 - PB1D10 SINE Alu -36 81 7 9 1682 219 274 0 19 chr5 143787082 143787134 -8750125 - ID4_ SINE ID -32 51 1 9 1682 360 284 1 0 chr5 143787454 143787546 -8749713 - B1F1 SINE Alu -56 93 1 9 1682 531 254 67 36 chr5 143787774 143787969 -8749290 + ERVL-E-int LTR ERVL 2361 2652 -3109 9 1682 478 322 142 19 chr5 143788347 143788670 -8748589 - MLT1E2 LTR MaLR -179 448 86 9 1682 331 252 171 0 chr5 143788708 143788831 -8748428 + MIR SINE MIR 21 164 -98 9 1682 888 113 35 0 chr5 143790733 143790875 -8746384 + B1_Mur4 SINE Alu 3 149 -1 9 1682 307 217 106 24 chr5 143790888 143790973 -8746286 + B3 SINE B2 48 139 -77 9 1682 507 293 157 8 chr5 143791479 143791727 -8745532 - B4A SINE B4 -5 287 3 9 1682 329 186 14 14 chr5 143791980 143792051 -8745208 - ID_B1 SINE B4 -11 213 143 9 1682 645 168 76 51 chr5 143792092 143792249 -8745010 - B2_Mm2 SINE B2 -26 169 9 9 1682 524 321 14 0 chr5 143792254 143792394 -8744865 - ID_B1 SINE B4 -81 143 2 9 1682 657 175 61 0 chr5 143792692 143792806 -8744453 + B1_Mur2 SINE Alu 2 122 -27 9 1682 27 29 0 0 chr5 143792821 143792855 -8744404 + AT_rich Low_complexity Low_complexity 1 34 0 9 1682 258 105 0 0 chr5 143792855 143792893 -8744366 + (A)n Simple_repeat Simple_repeat 1 38 0 9 1682 446 312 136 19 chr5 143793805 143793840 -8743419 + B4 SINE B4 47 87 -205 9 1682 230 0 0 32 chr5 143793840 143793871 -8743388 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1 1682 446 312 136 19 chr5 143793871 143794041 -8743218 + B4 SINE B4 88 276 -16 9 1682 258 356 0 19 chr5 143794086 143794192 -8743067 + B1F SINE Alu 38 141 -8 1 1682 648 162 49 49 chr5 143794960 143795103 -8742156 - B1_Mur2 SINE Alu -2 147 5 1 1682 239 265 66 0 chr5 143795370 143795451 -8741808 + PB1D7 SINE Alu 34 125 -2 1 1682 373 246 148 0 chr5 143795478 143795600 -8741659 + RSINE1 SINE B4 5 144 -21 1 1682 1545 48 0 16 chr5 143796456 143796645 -8740614 - B2_Mm1t SINE B2 -7 186 1 1 1682 462 273 136 65 chr5 143796646 143796830 -8740429 - B3A SINE B2 -1 197 1 1 1682 195 293 30 82 chr5 143796836 143796970 -8740289 - MIRc SINE MIR -65 203 77 1 1682 225 328 61 9 chr5 143797465 143797579 -8739680 - PB1D9 SINE Alu 0 120 1 1 1682 879 156 7 7 chr5 143798181 143798323 -8738936 - B1_Mur4 SINE Alu -6 144 3 1 1682 206 159 42 42 chr5 143798333 143798362 -8738897 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1 1682 1157 97 73 6 chr5 143798362 143798539 -8738720 - B2_Mm2 SINE B2 -6 189 1 1 1682 206 159 42 42 chr5 143798539 143798581 -8738678 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1 1682 645 161 16 39 chr5 143799921 143800050 -8737209 + B1_Mur3 SINE Alu 23 148 -1 1 1682 206 200 0 0 chr5 143800050 143800075 -8737184 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 1 1682 180 77 0 0 chr5 143800075 143800101 -8737158 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1 1682 206 200 0 0 chr5 143800101 143800130 -8737129 + (CAAAC)n Simple_repeat Simple_repeat 5 33 0 1 1682 223 293 40 13 chr5 143800169 143800245 -8737014 - RSINE1 SINE B4 -1 164 87 1 1682 315 315 27 50 chr5 143800265 143800445 -8736814 - B4 SINE B4 -118 174 2 1 1682 399 233 104 40 chr5 143801291 143801416 -8735843 - B1_Mur2 SINE Alu -7 142 10 1 1682 337 206 27 134 chr5 143801425 143801537 -8735722 - PB1D9 SINE Alu -20 100 1 1 1682 267 122 0 0 chr5 143801539 143801588 -8735671 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1682 334 169 51 0 chr5 143801588 143801647 -8735612 - B1_Mur4 SINE Alu -6 144 83 1 1682 423 230 11 0 chr5 143801647 143801734 -8735525 + B1F SINE Alu 30 117 -32 1 1682 308 279 23 0 chr5 143802104 143802190 -8735069 + MLT1B LTR MaLR 10 97 -293 1 1682 1323 75 15 46 chr5 143803180 143803377 -8733882 + B2_Mm2 SINE B2 1 191 -4 1 1682 311 266 63 0 chr5 143804077 143804156 -8733103 - B1F1 SINE Alu -65 84 1 1 1682 1030 159 20 10 chr5 143804225 143804428 -8732831 + RMER17C LTR ERVK 206 410 0 1 1682 1040 182 80 0 chr5 143804429 143804616 -8732643 - B3 SINE B2 -13 203 2 1 1682 441 76 0 0 chr5 143804811 143804877 -8732382 + (CA)n Simple_repeat Simple_repeat 1 66 0 1 1682 1162 75 0 7 chr5 143805424 143805572 -8731687 + B1_Mus2 SINE Alu 1 147 0 1 1682 245 173 39 0 chr5 143805575 143805627 -8731632 + A-rich Low_complexity Low_complexity 2 55 0 1 1682 720 181 72 7 chr5 143806208 143806347 -8730912 - B1_Mur2 SINE Alu -1 148 1 1 1682 360 0 0 0 chr5 143807327 143807367 -8729892 + (TAAG)n Simple_repeat Simple_repeat 1 40 0 1 1682 401 211 146 9 chr5 143809047 143809157 -8728102 - B1_Mur2 SINE Alu -1 148 24 1 1682 991 224 181 7 chr5 143809640 143809950 -8727309 + MTE2b LTR MaLR 7 370 -9 1 1682 195 42 0 0 chr5 143810509 143810533 -8726726 + (TC)n Simple_repeat Simple_repeat 2 25 0 1 1682 2990 72 7 15 chr5 143811146 143811553 -8725706 - L1Md_F2 LINE L1 0 6582 6179 1 1682 348 287 88 44 chr5 143812152 143812265 -8724994 - ID_B1 SINE B4 -97 127 10 1 1682 1248 30 120 12 chr5 143812745 143812912 -8724347 - B2_Mm2 SINE B2 -8 187 3 1 1682 252 59 0 0 chr5 143813928 143813962 -8723297 + ID_B1 SINE B4 139 172 -52 1 1682 203 305 17 0 chr5 143813980 143814039 -8723220 + GA-rich Low_complexity Low_complexity 3 62 0 1 1682 266 156 0 39 chr5 143814211 143814272 -8722987 - B1F SINE Alu -6 143 53 1 1682 285 29 0 0 chr5 143815267 143815301 -8721958 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1682 745 243 127 0 chr5 143816050 143816231 -8721028 + B3 SINE B2 3 206 -10 1 1682 326 329 73 0 chr5 143816650 143816787 -8720472 + MER58B DNA MER1_type 194 340 -1 1 1682 328 196 127 0 chr5 143816882 143816974 -8720285 - B1F2 SINE Alu -5 112 10 1 1682 1254 41 0 0 chr5 143816997 143817144 -8720115 + B1_Mm SINE Alu 1 147 0 1 1682 380 117 17 35 chr5 143817145 143817260 -8719999 + A-rich Low_complexity Low_complexity 2 114 0 1 1682 273 316 21 10 chr5 143817742 143817838 -8719421 + B1F2 SINE Alu 2 98 -51 1 1682 1555 48 0 16 chr5 143818563 143818752 -8718507 - B2_Mm1a SINE B2 -6 187 2 1 1682 585 237 0 22 chr5 143818843 143818977 -8718282 - B3A SINE B2 -67 131 1 1 1682 254 290 81 36 chr5 143819035 143819146 -8718113 - PB1D10 SINE Alu 0 117 2 1 1682 245 245 0 0 chr5 143821345 143821398 -8715861 + GA-rich Low_complexity Low_complexity 2 54 0 1 1682 248 268 97 14 chr5 143822162 143822234 -8715025 - ID4_ SINE ID -2 81 4 1 1682 343 251 112 64 chr5 143822261 143822448 -8714811 - L1MC5 LINE L1 -65 7896 7701 1 1682 347 182 0 13 chr5 143822700 143822778 -8714481 + CT-rich Low_complexity Low_complexity 4 80 0 1 1682 1318 111 11 0 chr5 143823822 143824011 -8713248 - B2_Mm1t SINE B2 -1 192 2 1 1682 198 0 0 0 chr5 143824229 143824251 -8713008 + (A)n Simple_repeat Simple_repeat 1 22 0 1 1682 259 304 0 48 chr5 143824602 143824685 -8712574 - ID4_ SINE ID -3 80 2 1 1682 350 187 187 0 chr5 143824718 143824809 -8712450 + PB1D10 SINE Alu 10 117 0 1 1682 1286 99 0 55 chr5 143825998 143826200 -8711059 + B2_Mm2 SINE B2 1 191 -4 1 1682 685 315 49 5 chr5 143826270 143826474 -8710785 - B3 SINE B2 -3 213 1 1 1682 267 306 63 48 chr5 143829126 143829315 -8707944 - L1MB1 LINE L1 -57 6111 5920 1 1682 8216 104 27 23 chr5 143831244 143832967 -8704292 + RLTR45-int LTR ERVK 4746 6070 -1174 1 1682 7413 49 17 0 chr5 143832977 143833855 -8703404 + RLTR13B1 LTR ERVK 1 893 0 1 1682 393 22 0 0 chr5 143834861 143834907 -8702352 + (TCCC)n Simple_repeat Simple_repeat 1 46 0 1 1682 287 328 59 17 chr5 143834928 143835046 -8702213 + MER21B LTR ERV1 458 580 -283 1 1682 722 291 15 0 chr5 143835442 143835648 -8701611 + B3 SINE B2 1 209 -7 1 1682 745 93 0 0 chr5 143835666 143835774 -8701485 + B1_Mus1 SINE Alu 36 143 -5 1 1682 2371 284 113 24 chr5 143835870 143836835 -8700424 + Lx9 LINE L1 6322 7372 -272 1 1682 277 291 38 0 chr5 143837731 143837810 -8699449 + PB1D7 SINE Alu 32 113 -7 1 1682 1446 54 21 31 chr5 143838264 143838456 -8698803 - B2_Mm2 SINE B2 -5 190 1 1 1682 525 200 54 60 chr5 143839529 143839678 -8697581 - B1_Mur2 SINE Alu 0 149 2 1 1682 1603 139 4 19 chr5 143839688 143839959 -8697300 + MTC LTR MaLR 102 368 -53 1 1682 886 226 0 17 chr5 143840170 143840350 -8696909 - B3 SINE B2 -5 211 35 1 1682 248 214 14 28 chr5 143840479 143840551 -8696708 - Charlie1a DNA MER1_type -892 563 493 1 1682 641 188 0 33 chr5 143840788 143840909 -8696350 - PB1D10 SINE Alu 0 117 1 1 1682 498 238 101 23 chr5 143841206 143841335 -8695924 + B1_Mur4 SINE Alu 12 150 0 1 1682 25 0 0 0 chr5 143841403 143841428 -8695831 + AT_rich Low_complexity Low_complexity 1 25 0 1 1682 1159 74 0 7 chr5 143843137 143843286 -8693973 - B1_Mus1 SINE Alu 0 148 1 1 1682 331 88 305 42 chr5 143843293 143843411 -8693848 - B2_Mm2 SINE B2 0 195 47 1 1682 1025 130 106 0 chr5 143843458 143843619 -8693640 - B2_Mm1t SINE B2 -14 179 2 1 1682 181 300 0 130 chr5 143844233 143844302 -8692957 + L2c LINE L2 3250 3309 -78 1 1682 1052 221 5 0 chr5 143844568 143844767 -8692492 + B3 SINE B2 1 200 -16 1 1682 258 105 0 0 chr5 143844767 143844805 -8692454 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 1 1682 198 171 0 0 chr5 143845389 143845430 -8691829 + A-rich Low_complexity Low_complexity 1 41 0 1 1682 216 0 0 0 chr5 143845917 143845941 -8691318 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1 1682 432 202 75 0 chr5 143846278 143846372 -8690887 + B1F2 SINE Alu 30 130 -19 1 1682 380 197 222 0 chr5 143846387 143846504 -8690755 + B1_Mur1 SINE Alu 1 143 -6 1 1682 621 193 18 0 chr5 143846706 143846820 -8690439 - B3 SINE B2 -5 211 96 1 1682 226 152 92 92 chr5 143847140 143847249 -8690010 + L1MC5 LINE L1 7410 7518 -443 1 1682 446 302 87 7 chr5 143847787 143847937 -8689322 + B3A SINE B2 1 162 -36 1 1682 471 35 0 0 chr5 143847973 143848030 -8689229 + (CACG)n Simple_repeat Simple_repeat 3 59 0 1 1682 891 170 0 0 chr5 143848065 143848200 -8689059 + B1_Mus1 SINE Alu 5 139 -9 1 1682 234 62 0 0 chr5 143848200 143848232 -8689027 + (CAAAC)n Simple_repeat Simple_repeat 2 33 0 1 1682 610 162 244 38 chr5 143848601 143848761 -8688498 + B2_Mm2 SINE B2 2 194 -1 1 1682 237 260 0 0 chr5 143849621 143849671 -8687588 + B1F1 SINE Alu 2 51 -98 1 1682 426 240 96 0 chr5 143850558 143850662 -8686597 + PB1D9 SINE Alu 1 114 -6 1 1682 669 239 165 24 chr5 143850745 143850994 -8686265 + L1MB3 LINE L1 5889 6172 -11 1 1682 1832 159 142 0 chr5 143851013 143851358 -8685901 + ORR1B1 LTR MaLR 1 394 0 1 1682 832 135 0 0 chr5 143851654 143851780 -8685479 + B1_Mus2 SINE Alu 21 146 -1 1 1682 22 35 0 0 chr5 143852613 143852642 -8684617 + AT_rich Low_complexity Low_complexity 1 29 0 1 1682 454 220 22 0 chr5 143852761 143852852 -8684407 - PB1D9 SINE Alu -18 102 10 1 1682 515 336 134 16 chr5 143852904 143853158 -8684101 + B4A SINE B4 1 284 -8 1 1682 236 196 20 0 chr5 143853182 143853233 -8684026 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1682 292 250 88 9 chr5 143853305 143853418 -8683841 + L1M4 LINE L1 5624 5745 -433 1 1682 355 202 37 75 chr5 143853549 143853656 -8683603 + PB1D9 SINE Alu 18 120 0 1 1682 620 186 87 60 chr5 143853849 143854032 -8683227 + B3A SINE B2 8 195 -3 1 1682 507 313 7 45 chr5 143854090 143854244 -8683015 + B1_Mur1 SINE Alu 2 149 0 1 1682 285 182 0 0 chr5 143854275 143854330 -8682929 + GA-rich Low_complexity Low_complexity 35 89 0 1 1682 1044 124 55 22 chr5 143855507 143855688 -8681571 - B2_Mm2 SINE B2 -8 187 1 1 1682 2867 168 160 72 chr5 143855712 143856541 -8680718 + RMER19B LTR ERVK 1 902 0 1 1682 546 16 0 0 chr5 143856701 143856764 -8680495 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1682 690 276 25 25 chr5 143856795 143856992 -8680267 - B4A SINE B4 -14 278 82 1 1682 307 267 96 102 chr5 143857149 143857316 -8679943 - B4A SINE B4 -118 174 9 1 1682 273 263 144 0 chr5 143857760 143857914 -8679345 - L1M5 LINE L1 -396 5768 5593 1 1682 841 175 55 28 chr5 143858155 143858337 -8678922 + B2_Mm2 SINE B2 2 188 -7 1 1682 1263 20 7 0 chr5 143858608 143858754 -8678505 + B1_Mus2 SINE Alu 1 147 0 1 1682 240 35 0 0 chr5 143858919 143858948 -8678311 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1 1682 874 163 7 7 chr5 143858948 143859082 -8678177 - B1_Mur2 SINE Alu -13 136 2 1 1682 791 183 42 0 chr5 143860232 143860374 -8676885 + B1_Mus1 SINE Alu 1 148 0 1 1682 292 291 25 0 chr5 143860457 143860536 -8676723 + ID2 SINE ID 2 82 -1 1 1682 219 121 0 0 chr5 143860644 143860677 -8676582 - PB1D9 SINE Alu -86 34 2 1 1682 297 212 57 57 chr5 143860785 143860855 -8676404 - ID4_ SINE ID -6 77 8 1 1682 504 194 39 0 chr5 143861468 143861571 -8675688 - PB1D9 SINE Alu -6 114 8 1 1682 279 268 73 0 chr5 143861498 143861580 -8675679 - B4A SINE B4 -123 169 82 1 1682 354 286 20 10 chr5 143861587 143861686 -8675573 - PB1D7 SINE Alu 0 120 21 1 1682 1252 150 22 39 chr5 143862061 143862290 -8674969 + URR1B DNA MER1_type 1 225 0 1 1682 21 0 0 0 chr5 143863255 143863276 -8673983 + AT_rich Low_complexity Low_complexity 1 21 0 1 1682 649 262 0 26 chr5 143863539 143863692 -8673567 - B1_Mur1 SINE Alu 0 149 1 1 1682 405 310 65 34 chr5 143863825 143864116 -8673143 + MLT1A LTR MaLR 12 311 -63 1 1682 326 240 102 37 chr5 143864530 143864638 -8672621 + L1MC5 LINE L1 6718 6832 -1129 1 1682 874 259 31 28 chr5 143864789 143865075 -8672184 - B4A SINE B4 -2 290 4 1 1682 385 229 104 0 chr5 143865153 143865249 -8672010 + ID_B1 SINE B4 106 211 -13 1 1682 261 0 0 0 chr5 143865253 143865282 -8671977 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1682 391 159 157 11 chr5 143865377 143865466 -8671793 + B1_Mur2 SINE Alu 47 148 -1 1 1682 1053 90 88 29 chr5 143865491 143865662 -8671597 + B2_Mm2 SINE B2 1 181 -14 1 1682 466 280 108 26 chr5 143865693 143865887 -8671372 + L1MC5 LINE L1 7018 7227 -734 1 1682 230 245 28 107 chr5 143866671 143866766 -8670493 - PB1D10 SINE Alu -36 113 23 1 1682 1394 93 10 5 chr5 143866873 143867067 -8670192 - B2_Mm2 SINE B2 0 195 1 1 1682 1720 26 0 0 chr5 143867089 143867282 -8669977 - B2_Mm1t SINE B2 0 193 1 1 1682 463 211 53 0 chr5 143867548 143867643 -8669616 - RSINE1 SINE B4 -57 108 9 1 1682 1401 44 72 6 chr5 143867788 143867949 -8669310 + B2_Mm1a SINE B2 1 160 -33 1 1682 243 0 0 0 chr5 143867949 143867976 -8669283 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1 1682 1401 44 72 6 chr5 143867976 143867995 -8669264 + B2_Mm1a SINE B2 161 192 -1 1 1682 595 199 72 14 chr5 143868003 143868141 -8669118 + B1_Mur4 SINE Alu 5 150 0 1 1682 535 309 13 7 chr5 143868214 143868367 -8668892 + B3 SINE B2 45 198 -18 1 1682 444 300 172 12 chr5 143868455 143868705 -8668554 + B4 SINE B4 3 292 0 1 1682 288 287 37 0 chr5 143869064 143869172 -8668087 + PB1D10 SINE Alu 1 112 -5 1 1682 24 53 0 0 chr5 143869576 143869614 -8667645 + AT_rich Low_complexity Low_complexity 1 38 0 1 1682 645 260 36 67 chr5 143869799 143870022 -8667237 - B3 SINE B2 0 216 1 1 1682 678 260 67 29 chr5 143870049 143870259 -8667000 + ID_B1 SINE B4 2 219 -5 1 1682 228 261 101 0 chr5 143870361 143870430 -8666829 - ID4_ SINE ID -6 77 2 1 1682 222 193 524 12 chr5 143870551 143870635 -8666624 - PB1D9 SINE Alu 0 127 1 1 1682 2892 183 31 16 chr5 143871155 143871706 -8665553 + Lx5 LINE L1 6492 7050 0 1 1682 250 287 80 63 chr5 143871727 143871829 -8665430 + Lx8 LINE L1 7271 7378 -95 1 1682 186 43 0 0 chr5 143871829 143871852 -8665407 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1682 250 287 80 63 chr5 143871852 143871924 -8665335 + Lx8 LINE L1 7379 7447 -26 1 1682 498 184 49 66 chr5 143872078 143872200 -8665059 + RSINE1 SINE B4 4 123 -42 1 1682 555 233 31 21 chr5 143872237 143872398 -8664861 - B3 SINE B2 -7 188 29 1 1682 693 98 9 26 chr5 143872394 143872509 -8664750 + B1_Mur4 SINE Alu 37 149 -1 1 1682 1143 81 0 0 chr5 143872566 143872714 -8664545 + B1_Mus1 SINE Alu 1 148 0 1 1682 302 0 26 0 chr5 143872714 143872752 -8664507 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 1 1682 803 90 75 8 chr5 143873354 143873488 -8663771 + B1_Mus1 SINE Alu 6 148 0 1 1682 279 195 169 0 chr5 143873571 143873648 -8663611 + PB1D9 SINE Alu 13 102 -18 1 1682 261 139 0 0 chr5 143873648 143873691 -8663568 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1 1682 271 255 103 31 chr5 143873725 143873822 -8663437 + B1_Mm SINE Alu 44 147 0 1 1682 36 82 0 0 chr5 143874359 143874444 -8662815 + GC_rich Low_complexity Low_complexity 1 85 0 1 1682 207 167 0 0 chr5 143874606 143874648 -8662611 + (CCG)n Simple_repeat Simple_repeat 1 42 0 1 1682 877 223 85 10 chr5 143875047 143875246 -8662013 + B3 SINE B2 3 216 0 1 1682 945 96 52 0 chr5 143875268 143875404 -8661855 + B1_Mus1 SINE Alu 1 143 -5 1 1682 25 0 0 0 chr5 143875404 143875429 -8661830 + AT_rich Low_complexity Low_complexity 1 25 0 1 1682 185 180 0 20 chr5 143875437 143875488 -8661771 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1682 439 215 17 11 chr5 143875510 143875650 -8661609 + (TG)n Simple_repeat Simple_repeat 2 142 0 1 1682 441 0 0 0 chr5 143875650 143875699 -8661560 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1682 439 215 17 11 chr5 143875699 143875732 -8661527 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1682 471 197 6 27 chr5 143875770 143875953 -8661306 + (TG)n Simple_repeat Simple_repeat 2 180 0 1 1682 384 193 17 8 chr5 143875984 143876104 -8661155 + (TG)n Simple_repeat Simple_repeat 2 122 0 1 1682 338 242 0 0 chr5 143876108 143876174 -8661085 - ID4_ SINE ID -16 67 2 1 1682 355 264 27 40 chr5 143876183 143876295 -8660964 - B1F SINE Alu 0 149 21 1 1682 379 220 43 130 chr5 143876391 143876553 -8660706 - MLT1A0 LTR MaLR -213 152 5 1 1682 248 158 249 16 chr5 143876649 143876740 -8660519 - PB1D10 SINE Alu -4 123 10 1 1682 517 214 25 119 chr5 143876788 143876809 -8660450 + B1F2 SINE Alu 1 21 -128 1 1682 3205 140 30 82 chr5 143876809 143877345 -8659914 - RMER15 LTR ERVL 0 575 71 1 1682 1095 43 65 0 chr5 143877345 143877483 -8659776 - B1_Mm SINE Alu 0 147 1 1 1682 3205 140 30 82 chr5 143877483 143877553 -8659706 - RMER15 LTR ERVL -505 70 1 1 1682 517 214 25 119 chr5 143877553 143877619 -8659640 + B1F2 SINE Alu 22 74 -75 1 1682 1148 75 7 0 chr5 143877619 143877765 -8659494 + B1_Mus1 SINE Alu 1 147 -1 1 1682 517 214 25 119 chr5 143877765 143877835 -8659424 + B1F2 SINE Alu 75 144 -5 1 1682 255 106 15 29 chr5 143877850 143877877 -8659382 + A-rich Low_complexity Low_complexity 4 29 0 1 1682 1289 34 0 0 chr5 143877877 143878025 -8659234 + B1_Mus1 SINE Alu 1 148 0 1 1682 255 106 15 29 chr5 143878025 143878065 -8659194 + A-rich Low_complexity Low_complexity 30 70 0 1 1682 248 0 31 0 chr5 143878091 143878123 -8659136 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1 1682 180 0 0 0 chr5 143878690 143878710 -8658549 + (TG)n Simple_repeat Simple_repeat 2 21 0 1 1682 626 267 113 49 chr5 143879115 143879399 -8657860 + MTE2b LTR MaLR 2 303 -76 1 1682 804 210 21 21 chr5 143879406 143879571 -8657688 + B3A SINE B2 1 164 -34 1 1682 216 0 0 0 chr5 143879571 143879595 -8657664 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1682 804 210 21 21 chr5 143879595 143879619 -8657640 + B3A SINE B2 165 190 -8 1 1682 309 287 9 9 chr5 143880206 143880322 -8656937 - L1ME1 LINE L1 -6 6173 6058 1 1682 360 271 245 0 chr5 143880331 143880486 -8656773 + B4A SINE B4 1 193 -99 1 1682 335 315 89 57 chr5 143880498 143880744 -8656515 + Lx8 LINE L1 7199 7452 -21 1 1682 409 261 48 4 chr5 143880744 143880881 -8656378 + MTE2a LTR MaLR 56 206 -213 1 1682 641 297 5 16 chr5 143880885 143881073 -8656186 + B3A SINE B2 7 192 -6 1 1682 1122 95 0 7 chr5 143881079 143881227 -8656032 + B1_Mus2 SINE Alu 1 147 0 1 1682 589 215 43 110 chr5 143881243 143881320 -8655939 + MTE2a LTR MaLR 167 236 -143 1 1682 589 280 20 31 chr5 143881320 143881515 -8655744 - B3A SINE B2 -4 194 2 1 1682 589 215 43 110 chr5 143881515 143881646 -8655613 + MTE2a LTR MaLR 237 361 -18 1 1682 1181 68 0 0 chr5 143881658 143881805 -8655454 + B1_Mm SINE Alu 1 147 0 1 1682 229 173 0 0 chr5 143881805 143881849 -8655410 + A-rich Low_complexity Low_complexity 10 53 0 1 1682 392 339 112 29 chr5 143881882 143882231 -8655028 + Charlie1a DNA MER1_type 402 779 -676 1 1682 321 297 151 8 chr5 143882365 143882484 -8654775 - RSINE1 SINE B4 -29 136 1 1 1682 785 154 59 0 chr5 143882531 143882667 -8654592 - B1_Mus1 SINE Alu 0 148 5 1 1682 899 195 18 122 chr5 143882949 143883171 -8654088 + B3 SINE B2 13 211 -5 1 1682 743 242 32 16 chr5 143883244 143883429 -8653830 - B3 SINE B2 0 216 29 1 1682 399 56 0 0 chr5 143883529 143883583 -8653676 + (TG)n Simple_repeat Simple_repeat 2 55 0 1 1682 513 206 47 0 chr5 143883602 143883709 -8653550 - RSINE1 SINE B4 -50 115 4 1 1682 397 315 54 18 chr5 143884029 143884197 -8653062 + MLT1H LTR MaLR 64 237 -358 1 1682 502 288 45 85 chr5 143884240 143884441 -8652818 + B4 SINE B4 6 198 -94 1 1682 718 176 7 47 chr5 143884339 143884488 -8652771 + B1_Mus1 SINE Alu 6 148 0 1 1682 237 218 109 152 chr5 143884494 143884586 -8652673 + B4A SINE B4 82 169 -123 1 1682 315 0 0 0 chr5 143884725 143884760 -8652499 + (TC)n Simple_repeat Simple_repeat 1 35 0 1 1682 330 26 0 0 chr5 143884760 143884798 -8652461 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1682 189 0 0 0 chr5 143884934 143884955 -8652304 + (CA)n Simple_repeat Simple_repeat 2 22 0 1 1682 258 222 99 0 chr5 143885020 143885101 -8652158 - ORR1D1 LTR MaLR 0 374 286 1 1682 419 35 0 0 chr5 143885081 143885139 -8652120 - B1_Mur4 SINE Alu -5 145 88 1 1682 905 169 0 20 chr5 143885161 143885312 -8651947 - B1_Mur2 SINE Alu -1 148 1 1 1682 1378 81 16 31 chr5 143885439 143885631 -8651628 - B2_Mm2 SINE B2 -6 189 1 1 1682 542 305 59 94 chr5 143885728 143886267 -8650992 - MT2A LTR ERVL -6 548 1 1 1682 304 335 57 0 chr5 143886641 143886835 -8650424 - L1MCa LINE L1 -6303 205 1 1 1682 413 195 11 33 chr5 143886840 143886930 -8650329 + B1_Mur1 SINE Alu 57 144 -5 1 1682 318 207 44 33 chr5 143887218 143887308 -8649951 + B4A SINE B4 49 139 -153 1 1682 578 279 26 13 chr5 143887646 143887802 -8649457 - RSINE1 SINE B4 -5 160 3 1 1682 183 205 0 0 chr5 143887816 143887855 -8649404 + T-rich Low_complexity Low_complexity 1 39 0 1 1682 255 266 41 31 chr5 143887865 143887962 -8649297 - PB1D10 SINE Alu -1 116 19 1 1682 288 0 0 0 chr5 143888054 143888086 -8649173 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1682 1181 56 0 0 chr5 143888086 143888230 -8649029 - B1_Mus1 SINE Alu 0 148 5 1 1682 365 297 127 25 chr5 143888289 143888486 -8648773 - B4 SINE B4 -74 218 2 1 1682 651 281 8 73 chr5 143888619 143888853 -8648406 + ID_B1 SINE B4 2 220 -4 1 1682 1078 99 36 18 chr5 143888912 143889077 -8648182 + B2_Mm2 SINE B2 1 168 -27 1 1682 229 256 13 0 chr5 143889134 143889183 -8648076 + T-rich Low_complexity Low_complexity 31 80 0 1 1682 873 155 13 47 chr5 143889183 143889332 -8647927 - B1_Mur4 SINE Alu -6 144 1 1 1682 229 256 13 0 chr5 143889332 143889360 -8647899 + T-rich Low_complexity Low_complexity 3 30 0 1 1682 623 223 20 54 chr5 143889387 143889534 -8647725 - B3A SINE B2 -35 163 22 1 1682 254 227 296 0 chr5 143890353 143890435 -8646824 - B3 SINE B2 -85 131 24 1 1682 1144 157 60 37 chr5 143890435 143890653 -8646606 + URR1B DNA MER1_type 1 223 -2 1 1682 504 231 28 9 chr5 143891632 143891741 -8645518 + B1_Mus1 SINE Alu 1 111 -37 1 1682 996 76 36 0 chr5 143891748 143891945 -8645314 + (GAAA)n Simple_repeat Simple_repeat 1 204 0 1 1682 410 211 0 133 chr5 143891977 143892097 -8645162 + MT2B LTR ERVL 155 258 -343 1 1682 869 171 0 0 chr5 143892001 143892130 -8645129 + B1_Mur4 SINE Alu 11 139 -11 1 1682 745 228 35 12 chr5 143892153 143892326 -8644933 - B3 SINE B2 -11 205 29 1 1682 1209 50 0 0 chr5 143892326 143892467 -8644792 + B1_Mm SINE Alu 1 141 -6 1 1682 183 42 0 0 chr5 143892470 143892494 -8644765 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1682 473 263 97 0 chr5 143892513 143892627 -8644632 + RSINE1 SINE B4 3 127 -38 1 1682 661 302 93 103 chr5 143892782 143892904 -8644355 - RLTR18 LTR ERVK -51 565 448 1 1682 3056 52 203 9 chr5 143892904 143893333 -8643926 - RLTR1B LTR ERV1 0 512 1 1 1682 661 302 93 103 chr5 143893333 143893705 -8643554 - RLTR18 LTR ERVK -169 447 76 1 1682 1299 61 0 6 chr5 143893826 143893984 -8643275 + B2_Mm2 SINE B2 2 159 -36 1 1682 293 43 0 42 chr5 143893984 143894032 -8643227 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1 1682 212 377 39 0 chr5 143894192 143894269 -8642990 - ID SINE ID -142 82 3 1 1682 389 270 167 26 chr5 143894422 143894578 -8642681 + B4A SINE B4 2 179 -113 1 1682 358 306 23 53 chr5 143894948 143894995 -8642264 + ID SINE ID 35 77 -147 1 1682 599 149 0 0 chr5 143894995 143895082 -8642177 + B1_Mur4 SINE Alu 1 87 -63 1 1682 250 291 19 130 chr5 143895212 143895366 -8641893 - B4A SINE B4 -146 146 10 1 1682 4210 63 40 9 chr5 143895517 143896060 -8641199 - LTRIS2 LTR ERV1 0 564 5 1 1682 1707 60 0 0 chr5 143896087 143896508 -8640751 - ZP3AR Satellite Satellite -1 421 1 1 1682 538 202 27 9 chr5 143896502 143896612 -8640647 - B3A SINE B2 -85 113 2 1 1682 423 281 34 42 chr5 143896796 143896915 -8640344 - RSINE1 SINE B4 -36 129 12 1 1682 246 235 20 0 chr5 143896912 143896963 -8640296 - RSINE1 SINE B4 -111 54 3 1 1682 490 236 56 28 chr5 143897307 143897451 -8639808 - RSINE1 SINE B4 -15 150 3 1 1682 1261 28 7 0 chr5 143897528 143897673 -8639586 - B1_Mm SINE Alu 0 147 2 1 1682 1290 105 22 0 chr5 143897684 143897865 -8639394 - B2_Mm2 SINE B2 -10 185 1 1 1682 232 91 0 43 chr5 143897992 143898038 -8639221 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 1 1682 668 209 57 7 chr5 143898038 143898064 -8639195 - B1_Mur3 SINE Alu -1 148 118 1 1682 195 69 0 0 chr5 143898064 143898093 -8639166 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1 1682 680 168 9 0 chr5 143898093 143898206 -8639053 - B1_Mm SINE Alu -32 115 2 1 1682 862 200 0 14 chr5 143898225 143898372 -8638887 - B1_Mus1 SINE Alu -1 147 3 1 1682 321 245 179 0 chr5 143898384 143898490 -8638769 - ID_B1 SINE B4 -8 216 92 1 1682 315 316 0 33 chr5 143898498 143898619 -8638640 - PB1D10 SINE Alu 0 117 1 1 1682 25 0 0 0 chr5 143900040 143900065 -8637194 + AT_rich Low_complexity Low_complexity 1 25 0 1 1682 900 96 0 0 chr5 143900065 143900190 -8637069 - B1_Mus1 SINE Alu 0 148 24 1 1682 343 210 0 110 chr5 143900110 143900201 -8637058 - MT2B LTR ERVL -344 257 177 1 1682 564 257 83 55 chr5 143900216 143900397 -8636862 - B3A SINE B2 0 198 13 1 1682 1076 106 34 50 chr5 143900658 143900837 -8636422 + B2_Mm2 SINE B2 2 177 -18 1 1682 1191 62 20 0 chr5 143900843 143900989 -8636270 - B1_Mur4 SINE Alu 0 150 2 1 1682 1139 239 72 8 chr5 143901203 143901468 -8635791 - B4A SINE B4 0 292 11 1 1682 620 232 0 0 chr5 143901480 143901592 -8635667 - PB1D10 SINE Alu -5 112 1 1 1682 528 128 23 0 chr5 143901642 143901677 -8635582 + ZP3AR Satellite Satellite 8 95 -117 1 1682 266 233 37 99 chr5 143901677 143901728 -8635531 + ID4_ SINE ID 2 46 -37 1 1682 352 259 0 0 chr5 143901728 143901809 -8635450 + ID4 SINE ID 1 81 -2 1 1682 266 233 37 99 chr5 143901809 143901838 -8635421 + ID4_ SINE ID 47 77 -6 1 1682 297 208 0 0 chr5 143902311 143902383 -8634876 + (CACCAT)n Simple_repeat Simple_repeat 4 75 0 1 1682 247 312 0 15 chr5 143902405 143902470 -8634789 - ID4 SINE ID -18 65 2 1 1682 212 328 0 0 chr5 143902478 143902536 -8634723 - PB1D10 SINE Alu -32 85 28 1 1682 438 278 43 57 chr5 143902659 143902800 -8634459 + B4 SINE B4 1 139 -153 1 1682 315 0 0 0 chr5 143902822 143902857 -8634402 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1682 916 137 27 14 chr5 143903263 143903411 -8633848 - B1_Mur4 SINE Alu 0 150 1 1 1682 620 271 119 0 chr5 143903548 143903725 -8633534 - B3A SINE B2 0 198 1 1 1682 815 284 60 36 chr5 143903725 143903944 -8633315 - B4A SINE B4 -66 226 1 1 1682 260 232 18 0 chr5 143904001 143904057 -8633202 + B4A SINE B4 90 146 -146 1 1682 490 245 0 0 chr5 143904007 143904105 -8633154 + PB1D10 SINE Alu 12 109 -8 1 1682 735 167 40 0 chr5 143904113 143904239 -8633020 + RSINE1 SINE B4 2 132 -33 1 1682 514 219 10 0 chr5 143904274 143904370 -8632889 + B1_Mur3 SINE Alu 9 105 -44 1 1682 336 214 53 97 chr5 143904276 143904376 -8632883 + MT2B LTR ERVL 175 268 -333 1 1682 783 151 13 103 chr5 143904376 143904531 -8632728 - B1_Mur3 SINE Alu -8 141 1 1 1682 336 214 53 97 chr5 143904531 143904544 -8632715 + MT2B LTR ERVL 269 282 -319 1 1682 1025 166 101 5 chr5 143904560 143904748 -8632511 - B3 SINE B2 -3 213 8 1 1682 429 295 0 19 chr5 143904834 143904941 -8632318 + PB1D10 SINE Alu 2 106 -11 1 1682 207 114 0 0 chr5 143904947 143904982 -8632277 + (CTAA)n Simple_repeat Simple_repeat 1 35 0 1 1682 788 180 29 7 chr5 143905028 143905168 -8632091 + B1_Mur1 SINE Alu 1 143 -6 1 1682 291 269 41 9 chr5 143905183 143905278 -8631981 + ID2 SINE ID 4 98 -54 1 1682 843 234 0 13 chr5 143905412 143905568 -8631691 + RSINE1 SINE B4 3 156 -9 1 1682 732 196 204 11 chr5 143905793 143905979 -8631280 - ID_B1 SINE B4 -1 223 2 1 1682 589 238 62 68 chr5 143906252 143906414 -8630845 + RSINE1 SINE B4 3 163 -2 1 1682 22 35 0 0 chr5 143906468 143906497 -8630762 + AT_rich Low_complexity Low_complexity 1 29 0 1 1682 719 206 21 28 chr5 143906501 143906646 -8630613 + B1_Mur1 SINE Alu 5 148 -1 1 1682 359 323 64 104 chr5 143906887 143907167 -8630092 + B4A SINE B4 24 292 0 1 1682 437 0 19 0 chr5 143907224 143907277 -8629982 + (TC)n Simple_repeat Simple_repeat 1 54 0 1 1682 250 255 99 77 chr5 143907414 143907594 -8629665 - MIRb SINE MIR -7 255 80 1 1682 338 304 136 87 chr5 143907895 143908000 -8629259 + HAL1-3A_ME LINE L1 2015 2131 -727 1 1682 443 18 18 0 chr5 143908000 143908056 -8629203 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1 1682 338 304 136 87 chr5 143908056 143908354 -8628905 + HAL1-3A_ME LINE L1 2132 2438 -420 1 1682 224 210 32 16 chr5 143908364 143908427 -8628832 + GA-rich Low_complexity Low_complexity 1 64 0 1 1682 443 248 56 80 chr5 143909543 143909576 -8627683 + MT2B LTR ERVL 129 252 -349 1 1682 790 156 0 0 chr5 143909576 143909698 -8627561 + B1_Mus1 SINE Alu 2 123 -25 1 1682 233 279 31 47 chr5 143909813 143909877 -8627382 + B4A SINE B4 31 93 -199 1 1682 1497 68 10 5 chr5 143909881 143910074 -8627185 + B2_Mm2 SINE B2 1 194 -1 1 1682 624 227 8 0 chr5 143910095 143910223 -8627036 + B4A SINE B4 82 210 -82 1 1682 405 0 0 0 chr5 143910278 143910323 -8626936 + (CA)n Simple_repeat Simple_repeat 2 46 0 1 1682 447 63 0 0 chr5 143910763 143910826 -8626433 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1682 1010 264 12 24 chr5 143910867 143911115 -8626144 - B4A SINE B4 -43 249 5 1 1682 283 271 137 37 chr5 143911124 143911168 -8626091 + L1M3a LINE L1 940 994 -5073 1 1682 432 0 0 0 chr5 143911168 143911216 -8626043 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1682 283 271 137 37 chr5 143911216 143911301 -8625958 + L1M3a LINE L1 995 1093 -4974 1 1682 1076 205 39 10 chr5 143911301 143911508 -8625751 + B3 SINE B2 2 214 -2 1 1682 283 271 137 37 chr5 143911508 143911618 -8625641 + L1M3a LINE L1 1094 1204 -4863 1 1682 1290 102 16 11 chr5 143911640 143911828 -8625431 + B2_Mm2 SINE B2 2 190 -5 1 1682 409 211 31 10 chr5 143911852 143911948 -8625311 - B3 SINE B2 0 216 119 1 1682 553 265 57 23 chr5 143911959 143912270 -8624989 + L1M3a LINE L1 3215 3567 -2579 1 1682 522 177 8 81 chr5 143912276 143912399 -8624860 + PB1D9 SINE Alu 2 115 -5 1 1682 776 273 5 60 chr5 143912431 143912588 -8624671 + B3A SINE B2 11 166 -32 1 1682 462 18 0 0 chr5 143912588 143912643 -8624616 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1682 776 273 5 60 chr5 143912643 143912684 -8624575 + B3A SINE B2 167 198 0 1 1682 435 299 38 5 chr5 143912693 143912878 -8624381 + L1M3a LINE L1 3556 3746 -2394 1 1682 259 326 84 0 chr5 143912882 143912977 -8624282 + ID_B1 SINE B4 115 217 -7 1 1682 328 340 45 25 chr5 143912991 143913030 -8624229 + L1M3a LINE L1 3742 3776 -2364 1 1682 2618 86 0 0 chr5 143913030 143913357 -8623902 - ORR1A2 LTR MaLR 0 327 1 1 1682 328 340 45 25 chr5 143913357 143913516 -8623743 + L1M3a LINE L1 3777 3943 -2197 1 1682 233 284 29 29 chr5 143913563 143913632 -8623627 + B4A SINE B4 3 71 -221 1 1682 188 67 0 32 chr5 143913772 143913803 -8623456 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 1 1682 3261 95 5 2 chr5 143913836 143914269 -8622990 - RLTR10C LTR ERVK -2 434 1 1 1682 1609 220 70 82 chr5 143914290 143914635 -8622624 + Lx8 LINE L1 6967 7342 -131 1 1682 838 234 47 47 chr5 143914635 143914846 -8622413 + B3 SINE B2 1 211 -5 1 1682 1609 220 70 82 chr5 143914846 143915011 -8622248 + Lx8 LINE L1 7343 7471 -2 1 1682 419 279 0 43 chr5 143915529 143915645 -8621614 + PB1D7 SINE Alu 1 111 -9 1 1682 854 230 77 39 chr5 143915759 143915967 -8621292 + URR1B DNA MER1_type 10 225 0 1 1682 409 240 48 116 chr5 143916013 143916159 -8621100 + B4 SINE B4 69 204 -88 1 1682 764 157 13 91 chr5 143916046 143916200 -8621059 + B1_Mur2 SINE Alu 7 148 -1 1 1682 236 204 0 0 chr5 143916234 143916278 -8620981 + L1MD LINE L1 3519 3562 -2584 1 1682 2947 142 36 25 chr5 143916273 143916828 -8620431 - LSU-rRNA_Hsa rRNA rRNA -3114 1921 1361 1 210 760 305 41 0 chr5 143916833 143917102 -8620157 + L1_Mur3 LINE L1 3544 3823 -2057 1 1683 2548 174 144 30 chr5 143917129 143917662 -8619597 + RMER19B LTR ERVK 309 902 0 1 1683 369 207 0 12 chr5 143917670 143917753 -8619506 + L1_Rod LINE L1 3834 3915 -1932 1 1683 450 242 65 82 chr5 143917828 143918030 -8619229 - RMER4B LTR ERVK -58 553 279 1 1683 912 172 2 16 chr5 143918046 143918500 -8618759 + CT-rich Low_complexity Low_complexity 1 447 0 1 1683 981 160 87 28 chr5 143918514 143918732 -8618527 - RMER4B LTR ERVK -338 247 17 1 1683 333 102 0 0 chr5 143918741 143918800 -8618459 + (TC)n Simple_repeat Simple_repeat 2 60 0 1 1683 1431 284 47 144 chr5 143919319 143919949 -8617310 + L1_Mur3 LINE L1 3940 4461 -1419 1 1683 1293 155 9 22 chr5 143919949 143920173 -8617086 + URR1B DNA MER1_type 5 225 0 1 1683 1431 284 47 144 chr5 143920173 143920747 -8616512 + L1_Mur3 LINE L1 4462 5026 -854 1 1683 396 40 0 0 chr5 143921235 143921285 -8615974 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1683 381 317 32 16 chr5 143921398 143921523 -8615736 - B4A SINE B4 -165 127 1 1 1683 407 235 0 121 chr5 143921527 143921614 -8615645 + MLT1A0 LTR MaLR 71 156 -209 1 1683 724 227 93 0 chr5 143921614 143921786 -8615473 + B3A SINE B2 1 188 -10 1 1683 407 235 0 121 chr5 143921786 143921814 -8615445 + MLT1A0 LTR MaLR 157 172 -193 1 1683 238 221 143 0 chr5 143921834 143921911 -8615348 + MLT1A0 LTR MaLR 269 356 -9 1 1683 1003 69 77 0 chr5 143922089 143922219 -8615040 - B1_Mus1 SINE Alu -7 141 2 1 1683 3087 51 15 0 chr5 143922220 143922609 -8614650 - MTB LTR MaLR -5 395 1 1 1683 627 239 63 0 chr5 143922834 143922976 -8614283 - RSINE1 SINE B4 -10 155 5 1 1683 522 0 0 0 chr5 143922987 143923045 -8614214 + (TC)n Simple_repeat Simple_repeat 1 58 0 1 1683 1005 50 0 0 chr5 143923046 143923166 -8614093 - B1_Mm SINE Alu -12 135 16 1 1683 615 219 36 36 chr5 143923169 143923319 -8613940 - MLT1A0 LTR MaLR -208 157 6 1 1683 2407 97 19 0 chr5 143923439 143923760 -8613499 + ORR1A2 LTR MaLR 1 327 0 1 1683 996 218 69 0 chr5 143923796 143923984 -8613275 + B3 SINE B2 1 201 -15 1 1683 1139 264 62 56 chr5 143923990 143924368 -8612891 + MTE2a LTR MaLR 29 405 -14 1 1683 252 322 10 100 chr5 143924913 143924939 -8612320 + ZP3AR Satellite Satellite 15 39 -173 1 1683 347 266 106 0 chr5 143924939 143925052 -8612207 + PB1 SINE Alu 1 125 -2 1 1683 410 302 30 85 chr5 143925052 143925371 -8611888 + ZP3AR Satellite Satellite 1 301 -107 1 1683 1944 101 81 0 chr5 143925373 143925669 -8611590 + ORR1A2 LTR MaLR 1 320 -7 1 1683 547 238 0 0 chr5 143925738 143925843 -8611416 + PB1D10 SINE Alu 5 109 -8 1 1683 2299 78 69 75 chr5 143926091 143926452 -8610807 + RLTR10D LTR ERVK 1 359 0 1 1683 351 306 125 70 chr5 143927822 143928022 -8609237 - B4A SINE B4 -8 284 74 1 1683 479 333 6 0 chr5 143928044 143928203 -8609056 - RSINE1 SINE B4 -4 161 2 1 1683 746 193 14 21 chr5 143928394 143928537 -8608722 + B1_Mur2 SINE Alu 8 149 0 1 1683 21 0 0 0 chr5 143928698 143928719 -8608540 + AT_rich Low_complexity Low_complexity 1 21 0 1 1683 1045 52 0 36 chr5 143928830 143928970 -8608289 + B2_Mm2 SINE B2 3 137 -58 1 1683 1614 94 249 110 chr5 143929483 143929829 -8607430 + ORR1B1 LTR MaLR 1 394 0 1 1683 638 258 8 8 chr5 143929903 143930036 -8607223 + B3A SINE B2 64 196 -2 1 1683 383 255 201 32 chr5 143930302 143930456 -8606803 - L1M5 LINE L1 -736 5437 5258 1 1683 1202 48 0 39 chr5 143930788 143930941 -8606318 - B1_Mus2 SINE Alu 0 147 1 1 1683 928 239 5 11 chr5 143930951 143931141 -8606118 - B3A SINE B2 -8 190 2 1 1683 358 255 167 0 chr5 143931445 143931547 -8605712 - B1_Mur1 SINE Alu 0 149 31 1 1683 237 200 183 14 chr5 143931863 143931934 -8605325 - B1F SINE Alu -58 91 9 1 1683 24 0 0 0 chr5 143931938 143931962 -8605297 + AT_rich Low_complexity Low_complexity 1 24 0 1 1683 721 203 15 29 chr5 143931983 143932120 -8605139 - B3A SINE B2 -63 135 1 1 1683 231 279 58 14 chr5 143932941 143933010 -8604249 - ID4 SINE ID -10 73 2 1 1683 288 283 53 21 chr5 143933137 143933231 -8604028 + Tigger7 DNA MER2_type 2395 2491 0 1 1683 1670 192 39 41 chr5 143933489 143933853 -8603406 + ORR1C1 LTR MaLR 5 367 -11 1 1683 26 0 0 0 chr5 143934321 143934347 -8602912 + AT_rich Low_complexity Low_complexity 1 26 0 1 1683 1210 55 0 14 chr5 143934655 143934803 -8602456 + B1_Mus1 SINE Alu 3 148 0 1 1683 368 325 21 12 chr5 143934846 143935151 -8602108 - MMSAT4 Satellite Satellite 0 307 1 1 1683 230 338 23 23 chr5 143935183 143935316 -8601943 - MMSAT4 Satellite Satellite -5 163 31 1 1683 381 315 15 15 chr5 143935592 143936211 -8601048 - MMSAT4 Satellite Satellite 0 619 1 1 1683 434 216 26 43 chr5 143937259 143937375 -8599884 - PB1D10 SINE Alu -1 116 3 1 1683 256 214 0 0 chr5 143937958 143938000 -8599259 + ID4_ SINE ID 37 78 -5 1 1683 296 270 26 26 chr5 143938138 143938252 -8599007 - MurSatRep1 Unknown Unknown -1393 744 631 1 1683 1289 219 39 81 chr5 143938478 143938835 -8598424 + MTE2a LTR MaLR 16 357 -22 1 1683 478 216 10 10 chr5 143938838 143938936 -8598323 - RSINE1 SINE B4 -65 100 3 1 1683 789 209 33 22 chr5 143939287 143939468 -8597791 + B3A SINE B2 1 183 -15 1 1683 21 36 0 0 chr5 143939489 143939517 -8597742 + AT_rich Low_complexity Low_complexity 1 28 0 1 1683 627 286 36 52 chr5 143939972 143940164 -8597095 + MTE2a LTR MaLR 3 191 -188 1 1683 410 242 76 57 chr5 143940312 143940417 -8596842 + RSINE1 SINE B4 59 165 0 1 1683 505 238 48 68 chr5 143940552 143940735 -8596524 + MTE2a LTR MaLR 194 412 -7 1 1683 261 244 12 82 chr5 143940980 143941065 -8596194 - B2_Mm1t SINE B2 -18 175 97 1 1683 286 269 58 0 chr5 143941575 143941679 -8595580 + PB1D7 SINE Alu 11 120 0 1 1683 383 328 106 47 chr5 143943294 143943633 -8593626 - MER67C LTR ERV1 -202 509 151 1 1683 328 288 145 47 chr5 143944006 143944146 -8593113 - MER67C LTR ERV1 -408 303 155 1 1683 1038 89 0 0 chr5 143944146 143944315 -8592944 + (GA)n Simple_repeat Simple_repeat 1 169 0 1 1683 328 288 145 47 chr5 143944315 143944429 -8592830 - MER67C LTR ERV1 -557 154 26 1 1683 373 174 14 0 chr5 143944442 143944511 -8592748 - ID4 SINE ID -13 70 1 1 1683 1559 45 0 0 chr5 143944511 143944711 -8592548 - ZP3AR Satellite Satellite -11 201 2 1 1683 953 235 19 5 chr5 143944832 143945037 -8592222 + B3 SINE B2 1 208 -8 1 1683 1287 67 32 27 chr5 143945039 143945224 -8592035 - B2_Mm2 SINE B2 -9 186 1 1 1683 219 290 0 42 chr5 143945460 143945532 -8591727 + MIR SINE MIR 82 150 -112 1 1683 240 288 69 43 chr5 143945963 143946079 -8591180 - LTR41 LTR ERVL -621 147 29 1 1683 254 262 0 56 chr5 143946437 143946526 -8590733 - B4 SINE B4 -207 85 2 1 1683 907 270 73 76 chr5 143946550 143946919 -8590340 - L1M4 LINE L1 -389 5795 5428 1 1683 732 182 63 57 chr5 143946954 143947129 -8590130 + B2_Mm2 SINE B2 1 176 -19 1 1683 229 310 0 14 chr5 143947185 143947257 -8590002 + (TG)n Simple_repeat Simple_repeat 2 72 0 1 1683 3486 62 41 71 chr5 143947364 143947872 -8589387 + MT2_Mm LTR ERVL 1 493 0 1 1683 26290 38 22 7 chr5 143947872 143951160 -8586099 + MERVL-int LTR ERVL 1 3338 -2147 1 1683 5732 58 9 1 chr5 143951157 143951988 -8585271 + MERVL-int LTR ERVL 4647 5629 -132 1 1683 275 181 26 53 chr5 143951988 143952064 -8585195 + ORR1A3-int LTR MaLR 567 640 -1323 1 1683 275 0 0 26 chr5 143952064 143952103 -8585156 + MERVL-int LTR ERVL 5448 5485 0 1 1683 3635 64 13 69 chr5 143952103 143952625 -8584634 + MT2_Mm LTR ERVL 1 493 0 1 1683 1070 172 70 0 chr5 143952633 143952819 -8584440 + URR1B DNA MER1_type 27 225 0 1 1683 343 354 28 31 chr5 143952853 143953062 -8584197 - B4A SINE B4 -82 210 1 1 1683 951 61 0 0 chr5 143953077 143953208 -8584051 + (TC)n Simple_repeat Simple_repeat 2 132 0 1 1683 983 245 43 117 chr5 143953208 143953268 -8583991 - B4A SINE B4 -11 281 224 1 1683 396 0 0 0 chr5 143953268 143953312 -8583947 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1683 988 114 0 0 chr5 143953321 143953453 -8583806 - B1_Mus1 SINE Alu -16 132 1 1 1683 983 245 43 117 chr5 143953453 143953682 -8583577 - B4A SINE B4 -69 223 4 1 1683 408 283 10 20 chr5 143953692 143953793 -8583466 - PB1D7 SINE Alu -1 119 20 1 1683 304 298 35 69 chr5 143953730 143953903 -8583356 - B4A SINE B4 -125 167 1 1 1683 567 303 0 0 chr5 143954280 143954412 -8582847 + RSINE1 SINE B4 3 134 -31 1 1683 257 265 44 0 chr5 143954447 143954515 -8582744 + B4A SINE B4 220 290 -2 1 1683 747 266 25 59 chr5 143954547 143954751 -8582508 - B3 SINE B2 -19 197 1 1 1683 180 97 0 0 chr5 143955055 143955086 -8582173 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1683 22 35 0 0 chr5 143955129 143955158 -8582101 + AT_rich Low_complexity Low_complexity 1 29 0 1 1683 194 176 20 0 chr5 143955161 143955212 -8582047 + (TG)n Simple_repeat Simple_repeat 1 52 0 1 1683 781 324 77 15 chr5 143955232 143955505 -8581754 - B4A SINE B4 -2 290 1 1 1683 315 71 0 0 chr5 143956144 143956186 -8581073 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 1 1683 312 222 42 0 chr5 143957076 143957148 -8580111 + ID4 SINE ID 3 77 -6 1 1683 763 257 63 52 chr5 143958204 143958475 -8578784 + B4 SINE B4 5 278 -14 1 1683 354 80 0 0 chr5 143958491 143958541 -8578718 + (CA)n Simple_repeat Simple_repeat 2 51 0 1 1683 977 221 34 39 chr5 143958555 143958736 -8578523 + B3 SINE B2 1 184 -32 1 1683 2070 117 42 60 chr5 143958736 143959071 -8578188 + ORR1A4 LTR MaLR 1 329 0 1 1683 977 221 34 39 chr5 143959071 143959096 -8578163 + B3 SINE B2 185 206 -10 1 1683 432 0 0 0 chr5 143959098 143959146 -8578113 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 1 1683 249 128 0 0 chr5 143959345 143959392 -8577867 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1 1683 293 103 0 0 chr5 143959392 143959431 -8577828 + (TCC)n Simple_repeat Simple_repeat 2 40 0 1 1683 691 201 0 11 chr5 143959431 143959607 -8577652 + CT-rich Low_complexity Low_complexity 2 175 0 1 1683 214 250 18 0 chr5 143959625 143959681 -8577578 + CT-rich Low_complexity Low_complexity 2 58 0 1 1683 2114 141 10 0 chr5 143960178 143960484 -8576775 - RLTR27 LTR ERVK 0 309 1 1 1683 1473 161 0 22 chr5 143960484 143960751 -8576508 - MMERVK10C-int LTR ERVK 0 7581 7321 1 1683 764 334 25 32 chr5 143960893 143961523 -8575736 - MMERVK10C-int LTR ERVK -520 7061 6436 1 1683 814 58 0 0 chr5 143962070 143962173 -8575086 - IAP-d-int LTR ERVK -6385 157 55 1 1683 2157 137 10 0 chr5 143962249 143962555 -8574704 - RLTR27 LTR ERVK 0 309 1 1 1683 312 330 45 18 chr5 143962759 143962870 -8574389 + PB1 SINE Alu 11 124 -3 1 1683 615 159 0 0 chr5 143963137 143963250 -8574009 + (TTCA)n Simple_repeat Simple_repeat 2 114 0 1 1683 746 227 142 42 chr5 143964133 143964332 -8572927 + B4 SINE B4 30 226 -66 1 1683 905 151 168 6 chr5 143964332 143964505 -8572754 + B3 SINE B2 1 201 -15 1 1683 746 227 142 42 chr5 143964505 143964544 -8572715 + B4 SINE B4 227 291 -1 1 1683 809 168 4 0 chr5 143964544 143964783 -8572476 + (CA)n Simple_repeat Simple_repeat 1 240 0 1 1683 286 326 80 15 chr5 143965151 143965288 -8571971 + B1F2 SINE Alu 1 146 -3 1 1683 231 235 139 57 chr5 143965290 143965412 -8571847 + B3 SINE B2 23 154 -44 1 1683 219 69 0 0 chr5 143965435 143965464 -8571795 + (CG)n Simple_repeat Simple_repeat 2 30 0 1 1683 843 10 0 0 chr5 143965464 143965559 -8571700 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 1683 224 286 14 28 chr5 143965616 143965688 -8571571 + ID4 SINE ID 13 83 0 1 1683 547 240 9 31 chr5 143966417 143966557 -8570702 - PB1D9 SINE Alu -5 144 6 1 1683 307 328 50 58 chr5 143966461 143966600 -8570659 - B4 SINE B4 -105 187 50 1 1683 192 91 44 22 chr5 143966773 143966803 -8570456 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1 1683 1227 169 14 18 chr5 143966803 143967020 -8570239 - B3 SINE B2 0 216 1 1 1683 192 91 44 22 chr5 143967020 143967034 -8570225 + (TTTA)n Simple_repeat Simple_repeat 2 15 0 1 1683 564 262 34 47 chr5 143967088 143967236 -8570023 - RSINE1 SINE B4 -4 161 16 1 1683 432 345 11 35 chr5 143967441 143967454 -8569805 - ID_B1 SINE B4 -1 223 213 1 1683 279 0 0 0 chr5 143967454 143967485 -8569774 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 1 1683 432 345 11 35 chr5 143967485 143967645 -8569614 - ID_B1 SINE B4 -12 212 54 1 1683 2079 151 96 3 chr5 143967645 143967998 -8569261 + ORR1B1 LTR MaLR 1 386 -8 1 1683 317 164 0 0 chr5 143968005 143968060 -8569199 - ID SINE ID -169 55 1 1 1683 1148 82 0 14 chr5 143968095 143968243 -8569016 + B1_Mus1 SINE Alu 2 147 -1 1 1683 323 306 194 52 chr5 143968255 143968503 -8568756 + B4 SINE B4 5 287 -5 1 1683 183 204 0 0 chr5 143968583 143968627 -8568632 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1683 348 117 396 28 chr5 143968647 143968753 -8568506 - B2_Mm2 SINE B2 -4 191 47 1 1683 1179 122 0 37 chr5 143968781 143968916 -8568343 - B2_Mm2 SINE B2 -14 181 53 1 1683 3126 94 63 0 chr5 143968916 143969363 -8567896 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1683 1179 122 0 37 chr5 143969363 143969415 -8567844 - B2_Mm2 SINE B2 -143 52 1 1 1683 952 207 16 16 chr5 143969642 143969824 -8567435 + B3A SINE B2 1 182 -16 1 1683 207 0 0 0 chr5 143969985 143970008 -8567251 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1683 426 324 27 33 chr5 143970023 143970173 -8567086 - B1F SINE Alu 0 149 1 1 1683 337 239 30 0 chr5 143970457 143970524 -8566735 + MTE2b LTR MaLR 90 158 -221 1 1683 1298 207 13 25 chr5 143970714 143970971 -8566288 + MTE2b LTR MaLR 114 351 -8 1 1683 412 322 102 37 chr5 143970938 143971245 -8566014 - MLT2B3 LTR ERVL -4 563 224 1 1683 400 243 70 26 chr5 143971210 143971324 -8565935 + B4 SINE B4 5 123 -169 1 1683 276 30 0 0 chr5 143971348 143971381 -8565878 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1683 206 225 0 0 chr5 143971389 143971429 -8565830 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 1 1683 230 305 128 13 chr5 143971469 143971625 -8565634 - MLT2B3 LTR ERVL -303 251 78 1 1683 332 364 52 41 chr5 143971509 143971681 -8565578 - MTEa LTR MaLR -203 176 3 1 1683 1439 68 21 10 chr5 143971699 143971892 -8565367 - B2_Mm2 SINE B2 0 195 1 1 1683 2900 181 10 8 chr5 143971912 143972414 -8564845 - Lx5 LINE L1 -3 7047 6545 1 1683 327 263 84 114 chr5 143972456 143972658 -8564601 - MTE2a LTR MaLR -183 196 1 1 1683 195 162 0 0 chr5 143972762 143972799 -8564460 + (TATG)n Simple_repeat Simple_repeat 3 39 0 1 1683 216 319 42 0 chr5 143972820 143972892 -8564367 - RSINE1 SINE B4 -13 152 78 1 1683 314 343 77 8 chr5 143972869 143973031 -8564228 - B4 SINE B4 -52 240 57 1 1683 482 299 36 15 chr5 143973031 143973226 -8564033 + B3 SINE B2 2 216 0 1 1683 836 133 64 35 chr5 143973231 143973402 -8563857 + Lx5 LINE L1 4365 4540 -1340 1 1683 7264 143 15 20 chr5 143973810 143975201 -8562058 + Lx5 LINE L1 4536 5929 -1121 1 1683 1764 176 44 50 chr5 143975203 143975764 -8561495 - RLTR22_Mur LTR ERVK -815 993 406 1 1683 769 155 8 0 chr5 143975784 143975913 -8561346 - Lx5 LINE L1 -190 6860 6731 1 1683 1418 129 18 0 chr5 143975927 143976152 -8561107 - RLTR22_Mur LTR ERVK -1451 397 169 1 1683 1159 35 0 0 chr5 143976171 143976312 -8560947 - B1_Mus2 SINE Alu 0 147 7 1 1683 783 249 9 43 chr5 143976290 143976500 -8560759 - RLTR22_Mur LTR ERVK -1645 203 1 1 1683 1659 171 0 0 chr5 143976500 143976774 -8560485 + Lx5 LINE L1 6516 6789 -261 1 1683 714 185 59 13 chr5 143976803 143976956 -8560303 + Lx5 LINE L1 6880 7039 -11 1 1683 1082 108 0 13 chr5 143976974 143977124 -8560135 + B1_Mus1 SINE Alu 1 148 0 1 1683 252 0 0 0 chr5 143977259 143977287 -8559972 + (CA)n Simple_repeat Simple_repeat 2 29 0 1 1683 405 90 0 0 chr5 143977287 143977354 -8559905 + (CAGAGA)n Simple_repeat Simple_repeat 6 72 0 1 1683 496 267 62 73 chr5 143977556 143977831 -8559428 + B4A SINE B4 2 273 -19 1 1683 519 17 0 0 chr5 143977905 143977965 -8559294 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1683 24 67 0 0 chr5 143978243 143978288 -8558971 + AT_rich Low_complexity Low_complexity 1 45 0 1 1683 798 109 0 0 chr5 143979017 143979136 -8558123 + (TTCC)n Simple_repeat Simple_repeat 3 121 0 1 1683 812 129 0 0 chr5 143979185 143979301 -8557958 - B2_Mm2 SINE B2 -78 117 2 1 1683 535 302 20 0 chr5 143979454 143979603 -8557656 - B3A SINE B2 -45 153 2 1 1683 414 0 0 0 chr5 143980160 143980206 -8557053 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1683 1731 137 164 6 chr5 143981054 143981371 -8555888 + ORR1B2 LTR MaLR 1 367 0 1 1683 194 0 39 0 chr5 143981694 143981720 -8555539 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1683 333 0 0 0 chr5 143981720 143981756 -8555503 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1683 267 152 0 21 chr5 143981758 143981805 -8555454 - B3 SINE B2 -69 147 102 1 1683 455 238 211 27 chr5 143981890 143982037 -8555222 - B3A SINE B2 -42 174 1 1 1683 326 275 48 32 chr5 143982116 143982240 -8555019 - PB1 SINE Alu -1 126 1 1 1683 631 316 75 24 chr5 143982617 143982870 -8554389 - B4 SINE B4 -25 267 2 1 1683 237 284 0 15 chr5 143983812 143983880 -8553379 + MT2A LTR ERVL 398 464 -69 1 1683 252 0 0 0 chr5 143983891 143983919 -8553340 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1683 638 284 61 63 chr5 143983985 143984418 -8552841 + MTD-int LTR MaLR 5 523 -735 1 1683 1241 209 78 121 chr5 143984428 143984585 -8552674 + Lx6 LINE L1 7006 7170 -290 1 1683 1016 38 128 15 chr5 143984585 143984718 -8552541 + B1_Mus1 SINE Alu 1 148 0 1 1683 1241 209 78 121 chr5 143984718 143984840 -8552419 + Lx6 LINE L1 7171 7257 -203 1 1683 531 0 0 0 chr5 143984840 143984899 -8552360 + (GA)n Simple_repeat Simple_repeat 1 59 0 1 1683 1241 209 78 121 chr5 143984899 143985065 -8552194 + Lx6 LINE L1 7258 7432 -28 1 1683 774 267 59 80 chr5 143985079 143985427 -8551832 + MTD-int LTR MaLR 623 1235 -345 1 1683 429 239 92 35 chr5 143985409 143985582 -8551677 + MTD-int LTR MaLR 1066 1248 -10 1 1683 1188 263 144 14 chr5 143985590 143985945 -8551314 + MTD LTR MaLR 5 405 -14 1 1683 738 0 0 0 chr5 143987135 143987217 -8550042 + (TTCC)n Simple_repeat Simple_repeat 1 82 0 1 1683 305 70 0 0 chr5 143987899 143987971 -8549288 + L1_Mus2 LINE L1 6520 6566 0 1 1683 588 158 0 10 chr5 143988014 143988110 -8549149 - B1_Mus2 SINE Alu 0 147 53 1 1683 247 167 179 36 chr5 143988060 143988116 -8549143 - MT2B2 LTR ERVL -327 257 194 1 1683 1123 274 71 63 chr5 143989357 143989723 -8547536 - MTE2a LTR MaLR -8 371 3 1 1683 2214 113 9 12 chr5 143989799 143990129 -8547130 - ORR1A4 LTR MaLR 0 329 1 1 1683 470 286 0 55 chr5 143990446 143990609 -8546650 - MTEb-int LTR MaLR -1081 499 346 1 1683 1062 282 34 34 chr5 143990638 143990932 -8546327 - MTE2a LTR MaLR -7 372 79 1 1683 284 157 8 90 chr5 143991012 143991145 -8546114 + G-rich Low_complexity Low_complexity 4 125 0 1 1683 985 82 89 0 chr5 143991192 143991338 -8545921 + B2_Mm2 SINE B2 10 168 -27 1 1683 355 153 267 12 chr5 143991351 143991437 -8545822 + B1_Mur2 SINE Alu 42 149 0 1 1683 835 329 32 4 chr5 143991460 143991741 -8545518 - MTEb-int LTR MaLR -1289 291 3 1 1683 505 258 65 0 chr5 143992038 143992162 -8545097 - MTEb LTR MaLR -21 358 227 1 1683 529 220 0 10 chr5 143992262 143992363 -8544896 + MTE2b LTR MaLR 1 100 -279 1 1683 22 56 0 0 chr5 143992390 143992426 -8544833 + AT_rich Low_complexity Low_complexity 1 36 0 1 1683 272 196 0 0 chr5 143992447 143992498 -8544761 - MTEb LTR MaLR -324 55 5 1 1683 223 178 0 0 chr5 143992628 143992673 -8544586 + T-rich Low_complexity Low_complexity 1 45 0 1 1683 1247 48 7 0 chr5 143992673 143992819 -8544440 - B1_Mus1 SINE Alu 0 148 2 1 1683 460 66 308 94 chr5 143992825 143992942 -8544317 - B2_Mm2 SINE B2 -7 188 47 1 1683 1244 86 34 0 chr5 143992969 143993144 -8544115 - B2_Mm2 SINE B2 -14 181 1 1 1683 1597 31 0 49 chr5 143993159 143993362 -8543897 - B2_Mm1a SINE B2 0 193 1 1 1683 499 235 43 0 chr5 143993531 143993646 -8543613 - RSINE1 SINE B4 -2 163 44 1 1683 462 204 0 0 chr5 143993706 143993809 -8543450 + (TG)n Simple_repeat Simple_repeat 1 103 0 1 1683 564 256 31 126 chr5 143993840 143994063 -8543196 - B3A SINE B2 -13 203 2 1 1683 239 164 73 0 chr5 143994135 143994190 -8543069 + B1F SINE Alu 56 114 -35 1 1683 1138 95 0 0 chr5 143994278 143994425 -8542834 + B1_Mus1 SINE Alu 1 147 -1 1 1683 318 195 0 0 chr5 143994471 143994548 -8542711 + (CA)n Simple_repeat Simple_repeat 2 78 0 1 1683 1358 99 21 5 chr5 143995220 143995412 -8541847 - B2_Mm2 SINE B2 0 195 1 1 1683 414 326 112 28 chr5 143995424 143995746 -8541513 + MER67C LTR ERV1 161 509 -202 1 1683 891 231 154 36 chr5 143998194 143998441 -8538818 + MTE2a LTR MaLR 16 291 -88 1 1683 212 186 259 0 chr5 143998980 143999064 -8538195 - B1F SINE Alu -2 147 2 1 1683 246 81 0 0 chr5 143999471 143999508 -8537751 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 1 1683 523 203 182 29 chr5 143999520 143999657 -8537602 - RSINE1 SINE B4 -6 159 2 1 1683 342 0 0 0 chr5 143999809 143999847 -8537412 + (TA)n Simple_repeat Simple_repeat 1 38 0 1 1683 379 348 18 50 chr5 144000008 144000226 -8537033 + B4A SINE B4 1 211 -81 1 1683 1361 56 0 6 chr5 144000562 144000742 -8536517 + (TCC)n Simple_repeat Simple_repeat 2 180 0 2 1683 477 0 0 0 chr5 144000742 144000795 -8536464 + (TTC)n Simple_repeat Simple_repeat 2 54 0 3 1683 1105 104 0 0 chr5 144000797 144000941 -8536318 - B1_Mus2 SINE Alu 0 147 4 4 1683 1347 105 10 5 chr5 144000947 144001139 -8536120 - B2_Mm2 SINE B2 -1 194 2 5 1683 212 360 19 39 chr5 144001377 144001481 -8535778 - B4A SINE B4 -167 125 24 6 1683 331 316 0 0 chr5 144001650 144001764 -8535495 + MurSatRep1 Unknown Unknown 631 744 -1393 7 1683 394 214 96 26 chr5 144002255 144002370 -8534889 + B1_Mur2 SINE Alu 11 133 -16 8 1683 283 242 0 16 chr5 144002458 144002521 -8534738 - RSINE1 SINE B4 -96 69 8 9 1683 746 113 89 0 chr5 144002678 144002802 -8534457 - B1_Mus2 SINE Alu -1 146 12 1 1683 1381 73 20 30 chr5 144003861 144004058 -8533201 - B2_Mm2 SINE B2 0 195 1 1 1683 566 243 204 4 chr5 144004403 144004634 -8532625 - ORR1D1 LTR MaLR -97 277 1 1 1683 445 277 26 34 chr5 144006262 144006475 -8530784 + MMSAT4 Satellite Satellite 1 211 -5 1 1683 334 341 15 15 chr5 144006594 144006815 -8530444 + MMSAT4 Satellite Satellite 1 221 -1 1 1683 398 339 11 9 chr5 144006846 144007483 -8529776 + MMSAT4 Satellite Satellite 1 638 0 1 1683 747 283 116 4 chr5 144007689 144007948 -8529311 + MER2 DNA MER2_type 57 344 -1 1 1683 1539 47 16 5 chr5 144008199 144008390 -8528869 + B2_Mm2 SINE B2 1 193 -2 1 1683 243 324 0 0 chr5 144009684 144009752 -8527507 + (TATG)n Simple_repeat Simple_repeat 1 68 0 1 1683 291 320 28 28 chr5 144009752 144009858 -8527401 - B4 SINE B4 0 292 187 1 1683 304 254 0 0 chr5 144009995 144010066 -8527193 - B4 SINE B4 -207 85 15 1 1683 323 267 27 45 chr5 144010070 144010180 -8527079 - PB1D10 SINE Alu 0 117 10 1 1683 347 230 58 0 chr5 144010533 144010620 -8526639 + PB1D10 SINE Alu 1 92 -25 2 1683 278 250 55 14 chr5 144010689 144010762 -8526497 + B4 SINE B4 1 76 -216 2 1683 895 109 87 7 chr5 144010847 144010985 -8526274 + B1_Mur3 SINE Alu 1 149 0 2 1683 255 61 0 0 chr5 144010990 144011023 -8526236 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 2 1683 248 111 22 0 chr5 144011041 144011086 -8526173 - U2 snRNA snRNA -142 46 1 2 1683 373 251 297 12 chr5 144011162 144011327 -8525932 - B3 SINE B2 -4 212 1 2 1683 231 125 0 0 chr5 144011336 144011376 -8525883 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2 1683 655 246 196 0 chr5 144011480 144011659 -8525600 - B3 SINE B2 -1 215 2 2 1683 1407 63 0 17 chr5 144011897 144012076 -8525183 - B2_Mm2 SINE B2 -19 176 1 2 1683 1181 75 0 0 chr5 144012513 144012660 -8524599 - B1_Mus2 SINE Alu 0 147 1 2 1683 583 261 140 5 chr5 144012712 144012905 -8524354 - ID_B1 SINE B4 -4 220 2 3 1683 312 27 0 0 chr5 144017983 144018020 -8519239 + (GA)n Simple_repeat Simple_repeat 1 37 0 3 1683 1013 185 130 0 chr5 144020493 144020693 -8516566 - URR1A DNA MER1_type 0 226 1 3 1683 186 43 0 0 chr5 144020964 144020987 -8516272 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1683 1012 97 0 76 chr5 144020987 144021137 -8516122 - B1_Mus1 SINE Alu -9 139 1 3 1683 397 227 305 56 chr5 144021228 144021461 -8515798 + B4A SINE B4 2 292 0 3 1683 664 291 92 12 chr5 144022302 144022552 -8514707 + B4 SINE B4 1 270 -22 3 1683 501 254 15 16 chr5 144022561 144022712 -8514547 - PB1D9 SINE Alu 0 149 4 3 1683 1151 140 161 0 chr5 144022731 144022924 -8514335 + URR1B DNA MER1_type 1 224 -1 3 1683 1187 75 0 0 chr5 144022942 144023089 -8514170 + B1_Mus1 SINE Alu 2 148 0 3 1683 440 293 8 16 chr5 144023883 144024008 -8513251 + B4 SINE B4 120 243 -49 4 1683 238 368 0 0 chr5 144024969 144025105 -8512154 - MurSatRep1 Unknown Unknown -1393 744 609 4 1683 226 204 0 0 chr5 144025744 144025788 -8511471 + CT-rich Low_complexity Low_complexity 3 46 0 4 1683 246 156 0 0 chr5 144026073 144026118 -8511141 + (CACCAT)n Simple_repeat Simple_repeat 4 48 0 4 1683 360 103 0 0 chr5 144026190 144026248 -8511011 + (TCC)n Simple_repeat Simple_repeat 2 59 0 4 1683 246 95 0 0 chr5 144027124 144027166 -8510093 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 4 1683 564 293 36 0 chr5 144027250 144027390 -8509869 - RSINE1 SINE B4 -19 146 2 4 1683 1021 170 79 5 chr5 144027753 144027942 -8509317 + B3 SINE B2 1 203 -13 4 1683 998 218 104 8 chr5 144027974 144028224 -8509035 + B4A SINE B4 5 278 -14 4 1683 315 0 0 0 chr5 144028233 144028268 -8508991 + (TC)n Simple_repeat Simple_repeat 1 35 0 4 1683 237 33 0 0 chr5 144028268 144028297 -8508962 + (CA)n Simple_repeat Simple_repeat 1 30 0 5 1683 564 15 0 0 chr5 144028297 144028361 -8508898 + (GA)n Simple_repeat Simple_repeat 2 66 0 5 1683 437 338 85 57 chr5 144028886 144029168 -8508091 + B4A SINE B4 1 290 -2 5 1683 1076 229 179 13 chr5 144029557 144029875 -8507384 + MTEa LTR MaLR 1 371 -8 5 1683 996 38 130 0 chr5 144029906 144030037 -8507222 + B1_Mus1 SINE Alu 1 148 0 5 1683 240 59 0 0 chr5 144030040 144030074 -8507185 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1683 21 71 0 0 chr5 144031459 144031501 -8505758 + GC_rich Low_complexity Low_complexity 1 42 0 5 1683 24 0 0 0 chr5 144031528 144031552 -8505707 + GC_rich Low_complexity Low_complexity 1 24 0 5 1683 320 257 28 28 chr5 144032964 144033144 -8504115 + (CATG)n Simple_repeat Simple_repeat 1 180 0 5 1683 327 255 130 20 chr5 144033267 144033367 -8503892 + PB1D10 SINE Alu 1 111 -6 5 1683 517 283 23 35 chr5 144033379 144033551 -8503708 + ZP3AR Satellite Satellite 43 212 0 6 1683 444 37 0 0 chr5 144033810 144033864 -8503395 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1683 1368 222 160 6 chr5 144033879 144034242 -8503017 + MTD LTR MaLR 1 419 0 6 1683 894 229 15 10 chr5 144034659 144034862 -8502397 + B4A SINE B4 7 210 -82 6 1683 907 168 216 0 chr5 144034891 144035058 -8502201 + B3 SINE B2 1 203 -13 6 1683 297 0 0 0 chr5 144035059 144035092 -8502167 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 6 1683 626 274 39 17 chr5 144035116 144035294 -8501965 + B3A SINE B2 1 182 -16 6 1683 21 0 0 0 chr5 144035323 144035344 -8501915 + AT_rich Low_complexity Low_complexity 1 21 0 6 1683 681 265 50 32 chr5 144035925 144036143 -8501116 + B4A SINE B4 27 248 -44 6 1683 402 224 0 0 chr5 144036176 144036252 -8501007 + B4A SINE B4 198 273 -19 6 1683 340 275 122 63 chr5 144036693 144036996 -8500263 + MER31B LTR ERV1 53 373 -93 6 1683 240 214 0 215 chr5 144037098 144037205 -8500054 - B3 SINE B2 -15 201 118 7 1683 625 291 10 31 chr5 144037211 144037406 -8499853 - B4A SINE B4 -99 193 3 7 1683 246 32 0 0 chr5 144037452 144037483 -8499776 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 7 1683 588 249 0 64 chr5 144037493 144037665 -8499594 - ID_B1 SINE B4 -55 169 9 7 1683 916 184 137 0 chr5 144037708 144037898 -8499361 + B3 SINE B2 1 216 0 7 1683 967 262 56 54 chr5 144038070 144038564 -8498695 + RMER4B LTR ERVK 46 574 -11 7 1683 1578 183 251 5 chr5 144038568 144038990 -8498269 + RMER15 LTR ERVL 50 575 0 7 1683 3949 235 41 24 chr5 144038991 144039933 -8497326 + RMER15-int LTR ERVL 2 959 -4040 7 1683 1544 73 16 0 chr5 144039933 144040124 -8497135 + B2_Mm2 SINE B2 2 195 0 7 1683 613 42 42 0 chr5 144040128 144040223 -8497036 + (CAGAGA)n Simple_repeat Simple_repeat 2 100 0 7 1683 1256 57 34 0 chr5 144040220 144040517 -8496742 + (GAA)n Simple_repeat Simple_repeat 1 306 0 7 1683 4961 257 58 26 chr5 144040517 144041924 -8495335 + RMER15-int LTR ERVL 948 2399 -2600 7 1683 2988 224 63 16 chr5 144041956 144042714 -8494545 + RMER15-int LTR ERVL 4147 4940 -59 7 1683 408 282 86 0 chr5 144042751 144042868 -8494391 + MurERV4-int LTR ERVK 1609 1735 -3525 8 1683 3873 208 55 98 chr5 144042997 144043136 -8494123 + MYSERV6-int LTR ERVK 7756 7922 -1037 8 1683 450 0 0 0 chr5 144043136 144043186 -8494073 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1683 3873 208 55 98 chr5 144043186 144044304 -8492955 + MYSERV6-int LTR ERVK 7923 8959 0 8 1683 1084 237 88 60 chr5 144044312 144044754 -8492505 + RMER4B LTR ERVK 17 534 -77 8 1683 342 0 0 0 chr5 144044754 144044792 -8492467 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1683 303 213 147 11 chr5 144044792 144044833 -8492426 + RMER4B LTR ERVK 535 588 -23 8 1683 2542 147 44 69 chr5 144044855 144045374 -8491885 + RMER15 LTR ERVL 70 575 0 7 1683 295 277 31 0 chr5 144045693 144045789 -8491470 - PB1D10 SINE Alu -14 106 6 8 1683 576 260 0 0 chr5 144045851 144046024 -8491235 + (TA)n Simple_repeat Simple_repeat 2 174 0 8 1683 425 248 166 25 chr5 144046275 144046432 -8490827 + RMER20B LTR ERVK 133 311 -316 8 1683 321 26 0 0 chr5 144046491 144046529 -8490730 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1683 555 270 51 22 chr5 144046563 144046741 -8490518 + B3 SINE B2 34 216 0 8 1683 523 235 88 0 chr5 144047010 144047146 -8490113 + B1F SINE Alu 2 149 0 8 1683 1036 156 64 12 chr5 144047146 144047384 -8489875 + ZP3AR Satellite Satellite 1 250 0 9 1683 459 0 0 0 chr5 144047431 144047482 -8489777 + (TG)n Simple_repeat Simple_repeat 1 51 0 9 1683 459 205 71 0 chr5 144047666 144047778 -8489481 - PB1D7 SINE Alu 0 120 1 9 1683 582 239 0 0 chr5 144047793 144047902 -8489357 - PB1D10 SINE Alu -6 111 3 9 1683 196 28 83 0 chr5 144048019 144048055 -8489204 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 9 1684 870 229 56 19 chr5 144048744 144048958 -8488301 - ID_B1 SINE B4 -2 222 1 9 1684 441 0 0 0 chr5 144049011 144049060 -8488199 + (CA)n Simple_repeat Simple_repeat 1 49 0 9 1684 267 154 0 0 chr5 144050183 144050248 -8487011 + (CTG)n Simple_repeat Simple_repeat 2 66 0 9 1684 321 264 0 0 chr5 144050398 144050727 -8486532 + (CTG)n Simple_repeat Simple_repeat 1 329 0 9 1684 323 324 0 16 chr5 144050835 144051017 -8486242 + (CTG)n Simple_repeat Simple_repeat 1 179 0 9 1684 254 324 7 7 chr5 144051155 144051304 -8485955 + (CTG)n Simple_repeat Simple_repeat 2 150 0 1 1684 525 71 0 0 chr5 144051787 144051857 -8485402 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 1 1684 893 98 53 0 chr5 144051859 144051991 -8485268 - B1_Mur4 SINE Alu -6 144 6 1 1684 540 338 30 10 chr5 144052120 144052347 -8484912 + B4A SINE B4 57 288 -4 1 1684 334 57 38 0 chr5 144052401 144052454 -8484805 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1684 601 254 98 64 chr5 144052597 144052862 -8484397 - B4 SINE B4 -18 274 1 1 1684 213 271 89 50 chr5 144053234 144053335 -8483924 - PB1D9 SINE Alu -11 109 5 1 1684 36 0 0 0 chr5 144054949 144054985 -8482274 + GC_rich Low_complexity Low_complexity 1 36 0 1 1684 238 206 0 56 chr5 144055102 144055174 -8482085 + C-rich Low_complexity Low_complexity 5 72 0 1 1684 320 100 0 91 chr5 144056427 144056493 -8480766 - HAL1-3A_ME LINE L1 -824 2034 1975 1 1684 364 243 0 0 chr5 144056529 144056599 -8480660 - B4A SINE B4 0 292 223 1 1684 441 103 0 0 chr5 144056622 144056690 -8480569 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1684 353 330 120 44 chr5 144056719 144056944 -8480315 - B4A SINE B4 -20 272 31 1 1684 241 250 14 29 chr5 144056908 144056978 -8480281 + ID SINE ID 8 76 -148 1 1684 410 239 0 0 chr5 144057488 144057576 -8479683 - RSINE1 SINE B4 -73 92 5 1 1684 511 167 0 89 chr5 144057599 144057704 -8479555 - B1_Mus2 SINE Alu 0 147 52 1 1684 752 250 70 0 chr5 144057704 144057904 -8479355 - ID_B1 SINE B4 -10 214 1 1 1684 210 154 0 0 chr5 144058439 144058478 -8478781 + A-rich Low_complexity Low_complexity 1 39 0 1 1684 384 240 79 47 chr5 144058493 144058620 -8478639 + ID_B1 SINE B4 86 216 -8 1 1684 589 277 178 20 chr5 144058651 144058898 -8478361 + B4A SINE B4 5 290 -2 1 1684 228 221 17 34 chr5 144058906 144059023 -8478236 + (CATG)n Simple_repeat Simple_repeat 1 115 0 1 1684 581 294 57 30 chr5 144059066 144059312 -8477947 - ORR1E LTR MaLR -117 253 1 1 1684 787 198 127 6 chr5 144059482 144059655 -8477604 - URR1A DNA MER1_type -31 195 2 1 1684 874 243 30 26 chr5 144059763 144059995 -8477264 + MTE2a LTR MaLR 137 369 -10 1 1684 796 196 24 6 chr5 144060165 144060334 -8476925 + B3A SINE B2 7 178 -20 1 1684 1089 112 42 21 chr5 144060348 144060539 -8476720 - B2_Mm2 SINE B2 0 195 1 1 1684 771 276 22 18 chr5 144060658 144060887 -8476372 + B4A SINE B4 1 230 -62 1 1684 540 224 144 12 chr5 144061149 144061316 -8475943 + B3A SINE B2 9 197 -1 1 1684 228 291 67 19 chr5 144061346 144061451 -8475808 + PB1D9 SINE Alu 5 114 -6 1 1684 651 200 48 7 chr5 144061498 144061644 -8475615 + B3 SINE B2 60 211 -5 1 1684 500 251 58 7 chr5 144061645 144061859 -8475400 + L1MB7 LINE L1 5856 6082 -97 1 1684 188 35 35 0 chr5 144061873 144061902 -8475357 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1684 504 0 0 0 chr5 144062505 144062561 -8474698 + (CA)n Simple_repeat Simple_repeat 2 57 0 1 1684 255 250 56 0 chr5 144062683 144062755 -8474504 + B3 SINE B2 132 207 -9 1 1684 258 273 26 0 chr5 144062788 144062865 -8474394 + ID2 SINE ID 2 80 -3 1 1684 224 222 0 0 chr5 144063767 144063812 -8473447 + B1F1 SINE Alu 4 48 -101 1 1684 2347 104 90 5 chr5 144064051 144064438 -8472821 + MTC LTR MaLR 1 420 -1 1 1684 744 231 35 20 chr5 144065337 144065540 -8471719 - B3 SINE B2 -6 210 5 1 1684 814 141 15 7 chr5 144065593 144065729 -8471530 + B1_Mm SINE Alu 9 145 -2 1 1684 207 88 0 0 chr5 144065742 144065776 -8471483 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1 1684 911 50 0 8 chr5 144065891 144066013 -8471246 + (GAAA)n Simple_repeat Simple_repeat 4 124 0 1 1684 448 298 57 58 chr5 144067380 144067692 -8469567 - B4 SINE B4 -20 272 3 1 1684 245 250 28 0 chr5 144068824 144068896 -8468363 + ID4_ SINE ID 2 75 -8 1 1684 356 274 10 21 chr5 144068937 144069034 -8468225 + PB1D7 SINE Alu 3 98 -22 1 1684 332 101 21 0 chr5 144069969 144070040 -8467219 - B1_Mur4 SINE Alu 0 150 42 1 1684 446 283 33 86 chr5 144070210 144070361 -8466898 - RSINE1 SINE B4 0 165 23 1 1684 731 203 220 0 chr5 144070361 144070543 -8466716 - URR1B DNA MER1_type -3 222 1 1 1684 872 129 13 26 chr5 144070900 144071051 -8466208 + B1_Mur3 SINE Alu 1 149 0 1 1684 896 214 6 27 chr5 144072136 144072319 -8464940 + B3 SINE B2 34 212 -4 1 1684 1920 99 112 0 chr5 144072346 144072640 -8464619 + ORR1A2 LTR MaLR 1 327 0 1 1684 227 203 17 0 chr5 144072670 144072729 -8464530 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 1 1684 527 262 59 53 chr5 144072729 144072898 -8464361 + B3A SINE B2 29 198 0 1 1684 323 210 261 28 chr5 144073107 144073249 -8464010 + B3A SINE B2 19 193 -5 1 1684 331 248 12 0 chr5 144073271 144073355 -8463904 + ID4_ SINE ID 10 94 -58 1 1684 780 50 233 0 chr5 144074014 144074134 -8463125 + B1_Mus1 SINE Alu 1 148 0 1 1684 345 284 19 10 chr5 144074165 144074268 -8462991 + PB1D10 SINE Alu 1 104 -13 1 1684 505 283 60 52 chr5 144074262 144074477 -8462782 - B3A SINE B2 -1 215 7 1 1684 591 215 58 0 chr5 144074588 144074709 -8462550 + B1_Mur1 SINE Alu 2 129 -20 1 1684 223 211 35 17 chr5 144074782 144074840 -8462419 + B4 SINE B4 1 59 -233 1 1684 866 174 36 63 chr5 144074877 144075098 -8462161 + B3 SINE B2 1 215 -1 1 1684 1036 91 0 0 chr5 144075131 144075274 -8461985 + B1_Mus1 SINE Alu 1 143 -5 1 1684 250 253 11 46 chr5 144075274 144075361 -8461898 + RSINE1 SINE B4 82 165 0 1 1684 674 155 40 60 chr5 144075382 144075533 -8461726 + B1_Mur2 SINE Alu 1 148 -1 1 1684 322 270 67 11 chr5 144075592 144075682 -8461577 + PB1D10 SINE Alu 22 116 -1 1 1684 263 321 0 62 chr5 144076156 144076269 -8460990 + PB1D10 SINE Alu 11 116 -1 1 1684 867 153 0 0 chr5 144077570 144077714 -8459545 - B1_Mus1 SINE Alu 0 148 5 1 1684 180 77 0 0 chr5 144078713 144078739 -8458520 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 1 1684 261 350 58 0 chr5 144079102 144079205 -8458054 + PB1D10 SINE Alu 9 117 0 1 1684 344 254 127 0 chr5 144079663 144079773 -8457486 - B4A SINE B4 -156 136 13 1 1684 367 268 43 35 chr5 144079990 144080106 -8457153 + PB1D10 SINE Alu 1 117 0 1 1684 475 321 135 10 chr5 144080109 144080567 -8456692 + L1MB8 LINE L1 5475 5997 -181 1 1684 464 250 40 8 chr5 144080660 144080708 -8456551 + ID SINE ID 33 84 -140 1 1684 254 287 46 0 chr5 144080708 144080795 -8456464 + B1_Mm SINE Alu 3 93 -54 1 1684 274 310 0 110 chr5 144080827 144080904 -8456355 + B1_Mur1 SINE Alu 1 66 -83 1 1684 1189 41 0 0 chr5 144080904 144081049 -8456210 - B1_Mm SINE Alu 0 147 3 1 1684 274 311 0 118 chr5 144081049 144081118 -8456141 + B1_Mur1 SINE Alu 64 127 -20 1 1684 1470 241 86 75 chr5 144081154 144081370 -8455889 + Lx8 LINE L1 6730 6945 -528 1 1684 414 0 0 0 chr5 144081370 144081416 -8455843 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1684 1470 241 86 75 chr5 144081416 144081772 -8455487 + Lx8 LINE L1 6946 7308 -165 1 1684 232 167 0 0 chr5 144081799 144081841 -8455418 + Lx8 LINE L1 7430 7471 -2 1 1684 335 259 24 0 chr5 144082509 144082675 -8454584 + (CA)n Simple_repeat Simple_repeat 1 170 0 1 1684 218 247 13 0 chr5 144082689 144082766 -8454493 + (CA)n Simple_repeat Simple_repeat 1 78 0 1 1684 404 250 23 0 chr5 144082816 144082992 -8454267 + (CA)n Simple_repeat Simple_repeat 1 180 0 1 1684 307 268 78 16 chr5 144083052 144083181 -8454078 + Charlie5 DNA MER1_type 1986 2122 -502 1 1684 553 287 87 25 chr5 144083718 144083993 -8453266 - B4 SINE B4 0 292 1 1 1684 401 271 36 77 chr5 144084073 144084241 -8453018 - RSINE1 SINE B4 -4 161 1 1 1684 210 167 48 0 chr5 144084244 144084286 -8452973 - PB1D7 SINE Alu -2 118 75 1 1684 237 318 23 0 chr5 144084495 144084583 -8452676 - L1M4 LINE L1 -259 5925 5836 1 1684 737 99 0 0 chr5 144084583 144084684 -8452575 + B1_Mus1 SINE Alu 28 128 -20 1 1684 285 29 0 0 chr5 144084686 144084720 -8452539 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1 1684 2085 149 18 0 chr5 144084729 144085071 -8452188 + Lx3B LINE L1 6626 6973 0 1 1684 1304 84 16 5 chr5 144085219 144085410 -8451849 + B2_Mm2 SINE B2 1 193 -2 1 1684 235 248 131 56 chr5 144085495 144085602 -8451657 + PB1D10 SINE Alu 1 115 -2 1 1684 314 234 89 25 chr5 144085643 144085722 -8451537 + L1M5 LINE L1 2876 2959 -3187 1 1684 435 240 60 60 chr5 144086101 144086234 -8451025 + B1F1 SINE Alu 9 141 -8 1 1684 291 276 63 44 chr5 144086856 144087015 -8450244 - B4 SINE B4 -88 204 43 1 1684 368 238 68 3 chr5 144087107 144087197 -8450062 - PB1D10 SINE Alu -9 111 16 1 1684 361 173 174 11 chr5 144087604 144087697 -8449562 - PB1D10 SINE Alu 0 117 12 1 1684 249 265 15 0 chr5 144088106 144088174 -8449085 - B4A SINE B4 -6 286 218 1 1684 366 23 0 0 chr5 144088227 144088270 -8448989 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1684 483 245 0 9 chr5 144088270 144088381 -8448878 - RSINE1 SINE B4 -51 114 5 1 1684 414 248 43 17 chr5 144088399 144088514 -8448745 - PB1D9 SINE Alu 0 120 3 1 1684 1562 52 0 0 chr5 144088521 144088714 -8448545 - B2_Mm1a SINE B2 0 193 1 1 1684 697 247 97 104 chr5 144088743 144089032 -8448227 - B4 SINE B4 0 292 6 1 1684 237 293 0 62 chr5 144089092 144089172 -8448087 - ID4_ SINE ID -8 75 1 1 1684 397 264 27 0 chr5 144089213 144089323 -8447936 - B4A SINE B4 -89 203 91 1 1684 805 172 7 26 chr5 144089320 144089475 -8447784 + URR1B DNA MER1_type 74 225 0 1 1684 356 210 12 12 chr5 144089539 144089621 -8447638 - B4A SINE B4 -209 83 2 1 1684 575 227 0 0 chr5 144089633 144089743 -8447516 - PB1D10 SINE Alu -6 111 2 2 1684 1319 57 17 6 chr5 144091303 144091481 -8445778 - B2_Mm2 SINE B2 -14 181 2 2 1684 625 197 49 7 chr5 144091524 144091667 -8445592 + B1_Mur2 SINE Alu 1 149 0 2 1684 225 258 0 0 chr5 144091705 144091767 -8445492 - PB1D10 SINE Alu -35 82 21 2 1684 189 107 0 0 chr5 144092382 144092410 -8444849 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1684 356 290 73 0 chr5 144093088 144093212 -8444047 + B1F1 SINE Alu 1 133 -16 2 1684 683 224 13 20 chr5 144093267 144093417 -8443842 + B1_Mur2 SINE Alu 1 149 0 2 1684 790 147 36 7 chr5 144093486 144093623 -8443636 - B1_Mur4 SINE Alu -9 141 1 2 1684 219 273 0 52 chr5 144093739 144093788 -8443471 + PB1D10 SINE Alu 36 81 -36 2 1684 239 317 19 56 chr5 144093788 144093895 -8443364 + PB1D10 SINE Alu 3 105 -12 2 1684 315 342 28 104 chr5 144094297 144094371 -8442888 + B4A SINE B4 2 74 -218 2 1684 889 157 0 0 chr5 144094371 144094511 -8442748 + B1_Mur3 SINE Alu 1 140 -9 2 1684 315 342 28 104 chr5 144094511 144094687 -8442572 + B4A SINE B4 75 233 -59 2 1684 1212 90 15 41 chr5 144094785 144094981 -8442278 - B2_Mm2 SINE B2 -3 192 2 2 1684 384 338 25 31 chr5 144094996 144095158 -8442101 + B4A SINE B4 112 272 -20 2 1684 194 333 0 35 chr5 144095410 144095497 -8441762 + L2a LINE L2 3340 3423 -3 2 1684 455 297 34 0 chr5 144095550 144095668 -8441591 + RSINE1 SINE B4 1 122 -43 2 1684 378 0 0 0 chr5 144095668 144095710 -8441549 + (GA)n Simple_repeat Simple_repeat 2 43 0 2 1684 778 304 73 76 chr5 144096191 144096456 -8440803 + MTEa LTR MaLR 10 283 -96 2 1684 345 297 176 35 chr5 144096456 144096711 -8440548 + B4A SINE B4 2 292 0 2 1684 778 304 73 76 chr5 144096711 144096815 -8440444 + MTEa LTR MaLR 284 378 -1 2 1684 455 209 57 0 chr5 144096945 144097050 -8440209 + B1F2 SINE Alu 1 111 -38 2 1684 199 326 12 40 chr5 144097239 144097321 -8439938 + MIR SINE MIR 80 166 -102 2 1684 2686 153 50 31 chr5 144097493 144098011 -8439248 + RLTR20C LTR ERVK 1 528 -6 2 1684 564 242 194 31 chr5 144098083 144098305 -8438954 + MTE2a LTR MaLR 121 378 -1 2 1684 306 271 26 70 chr5 144098320 144098435 -8438824 - B3A SINE B2 -11 205 96 2 1684 607 291 52 24 chr5 144099287 144099498 -8437761 + B4A SINE B4 10 226 -66 2 1684 319 157 39 103 chr5 144099560 144099638 -8437621 + B4A SINE B4 220 292 0 2 1684 302 167 32 71 chr5 144099979 144100055 -8437204 + MLT1J2 LTR MaLR 369 448 0 2 1684 2251 137 61 13 chr5 144100109 144100501 -8436758 - MTC LTR MaLR -10 411 1 2 1684 466 259 16 49 chr5 144100594 144100716 -8436543 - ID_B1 SINE B4 -3 221 104 2 1684 237 297 20 71 chr5 144100644 144100742 -8436517 - PB1D10 SINE Alu -23 94 2 2 1684 247 261 0 14 chr5 144101025 144101095 -8436164 - MLT1B LTR MaLR -3 387 319 2 1684 1034 105 73 18 chr5 144101138 144101303 -8435956 + B2_Mm2 SINE B2 3 176 -19 2 1684 927 211 93 17 chr5 144101328 144101564 -8435695 + MTD LTR MaLR 5 258 -161 2 1684 600 208 1 0 chr5 144101564 144101694 -8435565 + ORR1D1 LTR MaLR 1 131 -239 2 1684 543 285 55 65 chr5 144101883 144102082 -8435177 + B3A SINE B2 2 198 0 2 1684 215 61 0 29 chr5 144102140 144102174 -8435085 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1684 8800 143 42 31 chr5 144102177 144103846 -8433413 + RMER16-int LTR ERVK 2489 4176 -1230 2 1684 476 254 0 53 chr5 144103843 144103976 -8433283 + ETnERV2-int LTR ERVK 6086 6211 -1195 2 1684 389 260 176 14 chr5 144104067 144104215 -8433044 + ETnERV2-int LTR ERVK 6251 6422 -984 2 1684 346 111 0 36 chr5 144104428 144104484 -8432775 + ETnERV2-int LTR ERVK 7331 7384 -22 2 1684 1197 75 78 19 chr5 144104506 144104711 -8432548 + RLTR9A LTR ERVK 1 217 -151 2 1684 612 298 14 7 chr5 144104741 144104883 -8432376 + B1_Mur1 SINE Alu 4 146 -3 2 1684 243 0 0 0 chr5 144104908 144104935 -8432324 + (TATG)n Simple_repeat Simple_repeat 1 27 0 2 1684 334 327 0 35 chr5 144104937 144105051 -8432208 + PB1D10 SINE Alu 7 116 -1 2 1684 4401 50 3 14 chr5 144105072 144105642 -8431617 - LTRIS2 LTR ERV1 0 564 1 2 1684 2369 35 64 0 chr5 144105729 144106041 -8431218 - ORR1A1 LTR MaLR 0 346 15 2 1684 673 255 19 0 chr5 144106066 144106223 -8431036 - RSINE1 SINE B4 -3 162 3 2 1684 550 281 51 28 chr5 144106393 144106569 -8430690 - MER21B LTR ERV1 -654 209 30 2 1684 2377 130 31 40 chr5 144106612 144107068 -8430191 - RMER4A LTR ERVK -10 456 5 2 1684 478 299 43 25 chr5 144107209 144107370 -8429889 + B4A SINE B4 66 229 -63 2 1684 342 183 0 0 chr5 144107370 144107441 -8429818 + (TGG)n Simple_repeat Simple_repeat 1 71 0 2 1684 243 0 0 0 chr5 144107484 144107511 -8429748 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 1684 440 269 7 84 chr5 144107616 144107758 -8429501 + MLT1B LTR MaLR 244 374 -16 2 1684 634 112 0 20 chr5 144107832 144107932 -8429327 - B1_Mur2 SINE Alu -3 146 49 2 1684 513 193 28 0 chr5 144107952 144108061 -8429198 - PB1D9 SINE Alu -8 112 1 2 1684 562 228 87 0 chr5 144108070 144108197 -8429062 - ID_B1 SINE B4 -6 218 81 2 1684 1323 0 0 0 chr5 144108474 144108621 -8428638 + (GGGAGA)n Simple_repeat Simple_repeat 2 148 0 2 1684 1531 42 11 1 chr5 144108779 144109347 -8427912 - ZP3AR Satellite Satellite -21 573 1 2 1684 597 293 56 19 chr5 144109479 144109674 -8427585 - B3A SINE B2 -3 213 13 2 1684 1155 48 7 0 chr5 144109695 144109842 -8427417 + B1_Mus1 SINE Alu 1 148 0 2 1684 246 296 28 0 chr5 144110027 144110098 -8427161 + ORR1E LTR MaLR 8 80 -279 2 1684 356 211 18 18 chr5 144110132 144110225 -8427034 - MTD LTR MaLR -23 396 280 2 1684 1380 68 26 26 chr5 144110407 144110602 -8426657 - B2_Mm2 SINE B2 0 195 1 2 1684 289 320 0 64 chr5 144110676 144110750 -8426509 + PB1D10 SINE Alu 3 70 -47 2 1684 4193 22 0 2 chr5 144110750 144111244 -8426015 + MT2_Mm LTR ERVL 1 493 0 2 1684 289 320 0 64 chr5 144111244 144111279 -8425980 + PB1D10 SINE Alu 71 105 -12 2 1684 432 0 0 0 chr5 144111280 144111328 -8425931 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 1684 417 269 14 95 chr5 144111330 144111478 -8425781 + B4 SINE B4 10 145 -147 2 1684 393 22 0 0 chr5 144111547 144111593 -8425666 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1684 778 228 147 11 chr5 144111640 144111982 -8425277 - MTD LTR MaLR -2 417 6 2 1684 699 278 0 0 chr5 144112008 144112159 -8425100 + RSINE1 SINE B4 2 152 -13 2 1684 318 26 0 0 chr5 144112162 144112201 -8425058 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 1684 2574 208 64 64 chr5 144112208 144112818 -8424441 + RMER19C LTR ERVK 2 611 0 2 1684 318 285 125 31 chr5 144112916 144113048 -8424211 - L1MC3 LINE L1 -419 7366 7223 2 1684 2884 104 115 5 chr5 144113048 144113482 -8423777 + RLTR45 LTR ERVK 1 482 0 2 1684 318 285 125 31 chr5 144113482 144113541 -8423718 - L1MC3 LINE L1 -563 7222 7157 2 1684 806 134 47 40 chr5 144113544 144113559 -8423700 + B2_Mm2 SINE B2 2 11 -184 2 1684 2966 96 8 2 chr5 144113559 144113957 -8423302 - MTB LTR MaLR 0 400 1 2 1684 806 134 47 40 chr5 144113957 144114089 -8423170 + B2_Mm2 SINE B2 12 150 -45 2 1684 361 198 21 62 chr5 144114149 144114200 -8423059 - MTEb LTR MaLR -8 371 320 2 1684 1279 235 113 12 chr5 144114200 144114544 -8422715 - MTE2a LTR MaLR 0 379 1 2 1684 361 198 21 62 chr5 144114544 144114589 -8422670 - MTEb LTR MaLR -60 319 279 2 1684 610 246 6 77 chr5 144114590 144114771 -8422488 - L1MC3 LINE L1 -1353 6432 6265 2 1684 586 295 45 0 chr5 144114827 144114983 -8422276 - RSINE1 SINE B4 -1 164 2 2 1684 569 286 0 35 chr5 144115836 144115981 -8421278 - RSINE1 SINE B4 -22 143 4 2 1684 480 188 48 29 chr5 144116142 144116166 -8421093 - PB1D10 SINE Alu -1 116 94 2 1684 2087 142 12 6 chr5 144116166 144116491 -8420768 - ORR1A4 LTR MaLR -2 327 1 2 1684 480 188 48 29 chr5 144116491 144116570 -8420689 - PB1D10 SINE Alu -24 93 11 2 1684 338 275 12 0 chr5 144116500 144116580 -8420679 - ID_B1 SINE B4 -63 161 81 2 1684 286 264 11 75 chr5 144116580 144116592 -8420667 - MT2B2 LTR ERVL -344 238 153 2 1684 847 206 84 5 chr5 144116886 144117076 -8420183 - ID_B1 SINE B4 -14 210 6 2 1684 283 290 134 28 chr5 144117065 144117207 -8420052 + YREP_Mm Unknown Unknown 138 294 -1518 2 1684 865 254 53 0 chr5 144117092 144117301 -8419958 - ID_B1 SINE B4 0 224 5 2 1684 189 74 0 0 chr5 144117784 144117811 -8419448 + (CCCCCT)n Simple_repeat Simple_repeat 2 28 0 2 1684 444 244 0 85 chr5 144117958 144118088 -8419171 + PB1D7 SINE Alu 1 119 -1 2 1684 34 42 0 0 chr5 144118143 144118191 -8419068 + AT_rich Low_complexity Low_complexity 1 48 0 2 1684 324 250 148 0 chr5 144118227 144118335 -8418924 - PB1 SINE Alu -2 125 2 2 1684 425 299 33 72 chr5 144118547 144118727 -8418532 + ID_B1 SINE B4 52 224 0 2 1684 331 293 17 17 chr5 144118702 144118820 -8418439 + ZP3AR Satellite Satellite 16 133 -79 2 1684 207 0 0 0 chr5 144118836 144118859 -8418400 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2 1684 214 158 0 0 chr5 144118965 144119003 -8418256 + C-rich Low_complexity Low_complexity 1 38 0 2 1684 768 73 0 9 chr5 144119729 144119839 -8417420 - B1_Mus1 SINE Alu 0 148 40 2 1684 315 244 0 33 chr5 144119843 144119945 -8417314 + B1_Mur1 SINE Alu 20 142 -7 2 1684 187 214 29 0 chr5 144120021 144120091 -8417168 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 2 1684 1153 45 0 0 chr5 144120108 144120242 -8417017 - B1_Mus2 SINE Alu -13 134 1 2 1684 308 260 14 0 chr5 144121710 144121783 -8415476 + RSINE1 SINE B4 86 159 -6 2 1684 555 206 88 26 chr5 144121797 144121991 -8415268 - B3 SINE B2 -2 214 9 2 1684 770 202 26 18 chr5 144122016 144122188 -8415071 + B3 SINE B2 1 179 -16 2 1684 342 0 0 0 chr5 144122188 144122226 -8415033 + (CATA)n Simple_repeat Simple_repeat 2 39 0 2 1684 671 209 93 83 chr5 144122226 144122246 -8415013 + B2_Mm2 SINE B2 180 195 0 2 1684 348 248 21 55 chr5 144122450 144122560 -8414699 + PB1D10 SINE Alu 1 120 -7 3 1684 699 44 0 0 chr5 144122562 144122653 -8414606 + (GA)n Simple_repeat Simple_repeat 1 91 0 3 1684 488 182 67 22 chr5 144122659 144122794 -8414465 + B1F SINE Alu 7 147 -2 3 1684 383 268 54 130 chr5 144122794 144122877 -8414382 + B4A SINE B4 92 292 0 3 1684 405 0 0 0 chr5 144122898 144122943 -8414316 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 1684 468 111 83 0 chr5 144122943 144123015 -8414244 + ID4 SINE ID 3 80 -3 3 1684 342 0 0 0 chr5 144123032 144123070 -8414189 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1684 263 28 28 0 chr5 144123070 144123106 -8414153 + (GA)n Simple_repeat Simple_repeat 2 38 0 3 1684 594 236 31 0 chr5 144123473 144123600 -8413659 + RSINE1 SINE B4 4 134 -31 3 1684 315 140 0 0 chr5 144123791 144123841 -8413418 + B1_Mus1 SINE Alu 6 55 -93 3 1684 229 200 55 0 chr5 144123795 144123850 -8413409 + ID_B1 SINE B4 90 147 -77 3 1684 275 0 0 161 chr5 144123850 144123993 -8413266 + (CAGAG)n Simple_repeat Simple_repeat 1 120 0 3 1684 606 90 78 29 chr5 144123996 144124099 -8413160 + B1_Mur4 SINE Alu 43 150 0 3 1684 234 0 0 0 chr5 144124713 144124739 -8412520 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 1684 457 192 131 0 chr5 144124761 144124860 -8412399 - PB1D10 SINE Alu 0 117 6 3 1684 275 250 34 56 chr5 144124786 144124875 -8412384 - B4A SINE B4 -125 167 81 3 1684 599 215 29 7 chr5 144124869 144124882 -8412377 - B1F1 SINE Alu -1 148 136 3 1684 405 0 0 0 chr5 144124882 144124927 -8412332 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 1684 599 215 29 7 chr5 144124927 144125049 -8412210 - B1F1 SINE Alu -14 135 11 3 1684 301 215 45 97 chr5 144124948 144125082 -8412177 - MT2B LTR ERVL -337 264 138 3 1684 228 111 0 0 chr5 144125095 144125131 -8412128 + (ATG)n Simple_repeat Simple_repeat 3 38 0 3 1684 204 125 0 0 chr5 144126793 144126825 -8410434 + (ATG)n Simple_repeat Simple_repeat 3 34 0 3 1684 288 0 0 0 chr5 144126825 144126857 -8410402 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 1684 328 306 0 20 chr5 144126883 144126983 -8410276 + PB1D10 SINE Alu 18 115 -2 3 1684 273 267 82 82 chr5 144127186 144127296 -8409963 + PB1D7 SINE Alu 11 120 0 3 1684 803 224 0 12 chr5 144127263 144127426 -8409833 + ID_B1 SINE B4 49 209 -15 3 1684 458 33 0 16 chr5 144127426 144127487 -8409772 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 1684 316 299 102 22 chr5 144128028 144128165 -8409094 + B1F SINE Alu 1 148 -1 3 1684 1125 256 51 15 chr5 144128272 144128545 -8408714 + B4A SINE B4 2 284 -8 3 1684 360 0 0 0 chr5 144128557 144128597 -8408662 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1684 198 0 0 0 chr5 144128597 144128619 -8408640 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 1684 399 21 0 0 chr5 144128619 144128666 -8408593 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 1684 183 167 64 0 chr5 144128666 144128744 -8408515 + (TTATA)n Simple_repeat Simple_repeat 1 83 0 3 1684 874 149 19 19 chr5 144128755 144129016 -8408243 + (TA)n Simple_repeat Simple_repeat 1 261 0 3 1684 965 181 0 0 chr5 144129024 144129173 -8408086 + B1_Mur1 SINE Alu 1 149 0 3 1684 281 337 0 0 chr5 144129181 144129267 -8407992 + B4 SINE B4 81 166 -126 3 1684 471 182 121 0 chr5 144129195 144129294 -8407965 + PB1D9 SINE Alu 10 120 0 3 1684 255 261 29 0 chr5 144129307 144129376 -8407883 + B4A SINE B4 2 72 -220 3 1684 553 242 11 88 chr5 144129667 144129848 -8407411 - MER20 DNA MER1_type -45 174 8 3 1684 485 250 20 40 chr5 144130424 144130574 -8406685 - ZP3AR Satellite Satellite -22 190 44 3 1684 315 267 0 13 chr5 144130602 144130678 -8406581 + PB1D10 SINE Alu 1 75 -42 3 1684 602 304 42 0 chr5 144130716 144130884 -8406375 + ID_B1 SINE B4 48 222 -2 3 1684 286 176 13 26 chr5 144130884 144130960 -8406299 + GA-rich Low_complexity Low_complexity 1 75 0 3 1684 278 208 26 122 chr5 144130965 144130995 -8406264 + ID_B1 SINE B4 121 224 0 3 1684 367 185 24 47 chr5 144130995 144131080 -8406179 + B1F SINE Alu 67 149 0 3 1684 198 307 40 52 chr5 144133262 144133389 -8403870 + MIRm SINE MIR 16 136 -140 3 1684 243 247 0 0 chr5 144133452 144133525 -8403734 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 1684 22 56 0 0 chr5 144133793 144133829 -8403430 + AT_rich Low_complexity Low_complexity 1 36 0 3 1684 1088 95 0 33 chr5 144133834 144133974 -8403285 + B1_Mus1 SINE Alu 1 136 -12 3 1684 252 0 0 0 chr5 144133974 144134002 -8403257 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1684 1088 95 0 33 chr5 144134002 144134014 -8403245 + B1_Mus1 SINE Alu 137 148 0 3 1684 517 215 0 0 chr5 144134412 144134505 -8402754 - RSINE1 SINE B4 -63 102 10 3 1684 652 316 43 22 chr5 144135329 144135607 -8401652 + B4A SINE B4 2 285 -7 3 1684 213 132 0 0 chr5 144135620 144135658 -8401601 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 1684 272 48 0 23 chr5 144136361 144136404 -8400855 + (TTTAG)n Simple_repeat Simple_repeat 4 45 0 3 1684 636 206 46 0 chr5 144136404 144136535 -8400724 - B1F SINE Alu -12 137 1 3 1684 401 215 19 172 chr5 144136552 144136709 -8400550 - B1F1 SINE Alu -4 145 13 3 1684 368 250 100 18 chr5 144137608 144137718 -8399541 - PB1D9 SINE Alu -1 119 1 3 1684 981 221 28 28 chr5 144137963 144138177 -8399082 - B3 SINE B2 0 216 3 3 1684 216 255 0 56 chr5 144138400 144138454 -8398805 - RSINE1 SINE B4 -113 52 2 3 1684 407 222 223 71 chr5 144138546 144138784 -8398475 - B4A SINE B4 -18 274 1 3 1684 224 356 38 9 chr5 144138785 144138890 -8398369 - MIR SINE MIR -101 161 54 3 1684 395 181 0 67 chr5 144138898 144138987 -8398272 - ID4 SINE ID 0 83 1 3 1684 638 235 55 34 chr5 144139490 144139707 -8397552 - ID_B1 SINE B4 -46 246 19 3 1684 464 261 98 43 chr5 144139744 144139888 -8397371 + B4A SINE B4 1 154 -138 3 1684 523 242 145 68 chr5 144139888 144139963 -8397296 - RLTR20D LTR ERVK 0 568 483 3 1684 459 0 0 0 chr5 144139963 144140014 -8397245 + (TC)n Simple_repeat Simple_repeat 2 52 0 3 1684 523 242 145 68 chr5 144140014 144140186 -8397073 - RLTR20D LTR ERVK -86 482 304 3 1684 1558 53 4 6 chr5 144140259 144140708 -8396551 + ZP3AR Satellite Satellite 1 448 0 3 1684 283 275 14 0 chr5 144140708 144140777 -8396482 + ID4 SINE ID 1 70 -13 3 1684 930 318 67 50 chr5 144141144 144141667 -8395592 - MT2A LTR ERVL -1 532 1 3 1684 518 244 44 15 chr5 144142507 144142644 -8394615 + B1F1 SINE Alu 1 141 -8 3 1684 742 197 225 22 chr5 144142658 144142840 -8394419 + ID_B1 SINE B4 3 221 -3 3 1684 201 239 0 0 chr5 144144106 144144152 -8393107 + C-rich Low_complexity Low_complexity 2 47 0 3 1684 200 0 0 91 chr5 144144449 144144482 -8392777 + (CCCCCA)n Simple_repeat Simple_repeat 5 34 0 3 1684 580 196 0 19 chr5 144144709 144144785 -8392474 + polypyrimidine Low_complexity Low_complexity 79 154 0 3 1684 1053 150 0 0 chr5 144144785 144144965 -8392294 + (TCC)n Simple_repeat Simple_repeat 1 180 0 3 1684 580 196 0 19 chr5 144144965 144145044 -8392215 + polypyrimidine Low_complexity Low_complexity 2 78 0 3 1684 578 291 15 0 chr5 144145080 144145214 -8392045 - RSINE1 SINE B4 -28 137 2 3 1684 235 186 0 255 chr5 144145411 144145505 -8391754 - B1F SINE Alu -79 70 1 3 1684 459 252 34 51 chr5 144145536 144145653 -8391606 + PB1D7 SINE Alu 1 115 -5 3 1684 741 233 58 5 chr5 144145672 144145862 -8391397 + ID_B1 SINE B4 1 200 -24 3 1684 1219 75 0 0 chr5 144146059 144146206 -8391053 + B1_Mus2 SINE Alu 1 147 0 3 1684 225 198 0 0 chr5 144146206 144146287 -8390972 + A-rich Low_complexity Low_complexity 1 81 0 3 1684 449 225 9 29 chr5 144146490 144146595 -8390664 + PB1D10 SINE Alu 7 109 -8 3 1684 593 273 121 10 chr5 144146607 144146814 -8390445 + B4A SINE B4 1 230 -62 3 1684 430 218 0 18 chr5 144146815 144146904 -8390355 + B4A SINE B4 1 88 -77 3 1684 189 0 0 0 chr5 144146904 144146925 -8390334 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1684 356 313 6 84 chr5 144146925 144147013 -8390246 + RSINE1 SINE B4 89 165 0 3 1684 474 18 0 0 chr5 144147192 144147247 -8390012 + (TG)n Simple_repeat Simple_repeat 2 56 0 3 1684 718 176 52 0 chr5 144147247 144147383 -8389876 - B3A SINE B2 -54 144 2 3 1684 250 239 233 23 chr5 144147399 144147418 -8389841 - B4A SINE B4 -48 244 149 3 1684 525 162 84 0 chr5 144147418 144147527 -8389732 - PB1D9 SINE Alu 0 120 1 3 1684 250 239 233 23 chr5 144147527 144147540 -8389719 - B4A SINE B4 -48 148 70 3 1684 215 348 67 60 chr5 144147832 144147982 -8389277 - MIR SINE MIR -34 228 78 3 1684 22 35 0 0 chr5 144148942 144148971 -8388288 + GC_rich Low_complexity Low_complexity 1 29 0 3 1684 471 268 27 0 chr5 144149944 144150056 -8387203 + PB1D10 SINE Alu 1 115 -2 3 1684 215 234 45 45 chr5 144150935 144151002 -8386257 - ID4_ SINE ID -15 68 2 3 1684 725 219 99 11 chr5 144150964 144151183 -8386076 - ZP3AR Satellite Satellite -25 238 1 3 1684 360 0 0 0 chr5 144151186 144151226 -8386033 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 1684 570 29 0 0 chr5 144151226 144151294 -8385965 + (TA)n Simple_repeat Simple_repeat 1 68 0 3 1684 286 277 0 0 chr5 144151297 144151362 -8385897 - ID4_ SINE ID -11 72 8 3 1684 486 200 24 40 chr5 144151373 144151498 -8385761 - B1F SINE Alu -22 127 5 3 1684 227 299 19 110 chr5 144151385 144151539 -8385720 - MT2B LTR ERVL -331 270 131 3 1684 242 194 10 61 chr5 144151849 144151863 -8385396 + A-rich Low_complexity Low_complexity 2 14 0 3 1684 874 122 0 114 chr5 144151863 144152029 -8385230 + B1_Mus1 SINE Alu 1 147 -1 4 1684 242 194 10 61 chr5 144152029 144152113 -8385146 + A-rich Low_complexity Low_complexity 15 95 0 4 1684 518 206 10 0 chr5 144152141 144152243 -8385016 + ID_B1 SINE B4 117 219 -5 4 1684 396 202 15 0 chr5 144152291 144152380 -8384879 + PB1D10 SINE Alu 14 106 -43 4 1684 215 226 47 23 chr5 144152491 144152577 -8384682 + (GGGTG)n Simple_repeat Simple_repeat 4 91 0 4 1684 276 295 36 58 chr5 144153594 144153731 -8383528 + YREP_Mm Unknown Unknown 161 294 -1518 4 1684 674 216 28 14 chr5 144153613 144153754 -8383505 - ID_B1 SINE B4 -2 222 80 4 1684 208 131 21 21 chr5 144153754 144153801 -8383458 + CT-rich Low_complexity Low_complexity 1 47 0 4 1684 387 210 12 0 chr5 144153814 144153895 -8383364 - B1F SINE Alu -49 100 19 4 1684 337 262 182 63 chr5 144153895 144153973 -8383286 - ID_B1 SINE B4 -46 178 1 4 1684 352 245 21 31 chr5 144153981 144154078 -8383181 - ID_B1 SINE B4 -7 217 122 4 1684 595 161 119 0 chr5 144154166 144154284 -8382975 - RSINE1 SINE B4 -33 132 1 4 1684 303 230 0 0 chr5 144154645 144154732 -8382527 + (CA)n Simple_repeat Simple_repeat 1 87 0 4 1684 219 310 0 0 chr5 144155007 144155065 -8382194 - B1_Mus1 SINE Alu -78 70 13 4 1684 334 225 66 5 chr5 144155100 144155189 -8382070 - PB1D7 SINE Alu -4 123 25 4 1684 284 214 441 0 chr5 144155321 144155439 -8381820 - B3 SINE B2 -39 177 8 4 1684 1103 181 62 0 chr5 144155534 144155744 -8381515 - ID_B1 SINE B4 0 224 2 4 1684 1066 193 34 15 chr5 144155969 144156174 -8381085 + B3 SINE B2 1 209 -7 4 1684 1284 27 0 7 chr5 144156192 144156340 -8380919 - B1_Mus1 SINE Alu 0 148 2 4 1684 420 159 114 0 chr5 144156514 144156602 -8380657 + B3 SINE B2 119 216 0 4 1684 523 262 83 28 chr5 144156636 144156781 -8380478 + RSINE1 SINE B4 1 153 -12 4 1684 1170 62 0 40 chr5 144156819 144156971 -8380288 + B1_Mus2 SINE Alu 1 146 -1 4 1684 703 129 129 0 chr5 144157019 144157143 -8380116 + B1_Mur3 SINE Alu 2 141 -8 4 1684 300 111 0 0 chr5 144157143 144157188 -8380071 + (GGA)n Simple_repeat Simple_repeat 1 45 0 4 1684 258 324 0 0 chr5 144157199 144157273 -8379986 + PB1D10 SINE Alu 36 109 -8 4 1684 23 33 0 0 chr5 144157367 144157397 -8379862 + AT_rich Low_complexity Low_complexity 1 30 0 4 1684 296 265 0 14 chr5 144157616 144157685 -8379574 - ID4_ SINE ID -13 70 3 4 1684 250 366 30 0 chr5 144157766 144157867 -8379392 - RSINE1 SINE B4 -33 132 29 4 1684 367 263 42 0 chr5 144157847 144157942 -8379317 - ZP3AR Satellite Satellite -72 140 42 4 1684 415 263 25 17 chr5 144157948 144158068 -8379191 - B1F SINE Alu -8 141 21 4 1684 846 159 36 2 chr5 144158262 144158433 -8378826 + ID_B1 SINE B4 2 179 -113 4 1684 309 51 0 0 chr5 144158446 144158485 -8378774 + (CAAT)n Simple_repeat Simple_repeat 4 42 0 4 1684 461 163 59 30 chr5 144158623 144158724 -8378535 + ID_B1 SINE B4 120 223 -1 4 1684 766 196 49 56 chr5 144158724 144158886 -8378373 + RSINE1 SINE B4 5 165 0 4 1684 362 351 21 70 chr5 144159070 144159257 -8378002 + MLT1K LTR MaLR 1 178 -417 4 1684 225 388 33 8 chr5 144159812 144159934 -8377325 - MIRb SINE MIR -33 235 111 4 1684 40 79 0 0 chr5 144160028 144160117 -8377142 + AT_rich Low_complexity Low_complexity 1 89 0 4 1684 1347 86 16 5 chr5 144160139 144160327 -8376932 - B2_Mm2 SINE B2 -5 190 1 4 1684 550 264 79 9 chr5 144160331 144160516 -8376743 - MTD LTR MaLR -14 405 171 4 1684 304 308 0 0 chr5 144160659 144160737 -8376522 - MTD LTR MaLR -154 267 190 4 1684 309 263 0 59 chr5 144160768 144160869 -8376390 - MLT1B LTR MaLR -281 109 15 4 1684 353 363 43 16 chr5 144160921 144161106 -8376153 - RMER15 LTR ERVL -34 541 352 4 1684 501 132 16 32 chr5 144161526 144161651 -8375608 + (CA)n Simple_repeat Simple_repeat 2 124 0 4 1684 368 282 62 26 chr5 144161732 144161845 -8375414 - RSINE1 SINE B4 0 165 49 4 1684 624 14 0 0 chr5 144161856 144161929 -8375330 + (TG)n Simple_repeat Simple_repeat 1 73 0 4 1684 417 243 76 19 chr5 144161930 144162035 -8375224 - RSINE1 SINE B4 -48 117 7 4 1684 334 286 274 0 chr5 144162544 144162712 -8374547 + ID_B1 SINE B4 1 214 -10 4 1684 1266 47 0 0 chr5 144162717 144162865 -8374394 - B1_Mus1 SINE Alu 0 148 1 4 1684 183 80 0 0 chr5 144162891 144162916 -8374343 + (GGA)n Simple_repeat Simple_repeat 2 26 0 4 1684 389 176 0 133 chr5 144162919 144163024 -8374235 + PB1D9 SINE Alu 30 120 0 4 1684 297 222 158 12 chr5 144163582 144163664 -8373595 + RSINE1 SINE B4 3 96 -69 4 1684 333 0 0 0 chr5 144163675 144163712 -8373547 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1684 870 159 14 7 chr5 144163750 144163889 -8373370 - B1_Mur4 SINE Alu -9 141 2 4 1684 22 56 0 0 chr5 144164024 144164060 -8373199 + AT_rich Low_complexity Low_complexity 1 36 0 4 1684 249 279 25 12 chr5 144164081 144164161 -8373098 - B3A SINE B2 -108 90 10 4 1684 270 279 15 0 chr5 144164094 144164162 -8373097 - B4A SINE B4 -215 77 9 4 1684 564 281 99 27 chr5 144164299 144164522 -8372737 + B4A SINE B4 49 287 -5 4 1684 228 238 0 0 chr5 144164545 144164587 -8372672 + polypurine Low_complexity Low_complexity 3 44 0 4 1684 418 250 0 0 chr5 144164589 144164681 -8372578 + RSINE1 SINE B4 8 99 -66 4 1684 684 253 58 11 chr5 144164720 144164747 -8372512 - B3A SINE B2 0 198 171 4 1684 243 0 0 0 chr5 144164747 144164774 -8372485 + (TG)n Simple_repeat Simple_repeat 1 27 0 4 1684 684 253 58 11 chr5 144164774 144164934 -8372325 - B3A SINE B2 -28 170 2 4 1684 27 29 0 0 chr5 144164940 144164974 -8372285 + AT_rich Low_complexity Low_complexity 1 34 0 4 1684 614 266 31 8 chr5 144164997 144165192 -8372067 - B3A SINE B2 -1 215 18 4 1684 21 36 0 0 chr5 144165735 144165763 -8371496 + GC_rich Low_complexity Low_complexity 1 28 0 4 1684 403 276 19 0 chr5 144166665 144166770 -8370489 + PB1D10 SINE Alu 5 111 -6 4 1684 441 248 0 65 chr5 144167005 144167113 -8370146 + Tigger15a DNA TcMar 33 133 -582 4 1684 789 216 62 15 chr5 144167525 144167702 -8369557 - B3A SINE B2 -15 180 1 4 1684 826 243 29 5 chr5 144167713 144167920 -8369339 - B3 SINE B2 -4 212 1 4 1684 305 211 158 0 chr5 144168490 144168566 -8368693 - PB1D10 SINE Alu -29 88 1 4 1684 237 33 0 0 chr5 144168713 144168743 -8368516 + (T)n Simple_repeat Simple_repeat 1 30 0 4 1684 256 325 52 0 chr5 144168780 144168857 -8368402 - ID4_ SINE ID -1 82 2 4 1684 198 0 0 0 chr5 144169209 144169231 -8368028 + (TTG)n Simple_repeat Simple_repeat 3 24 0 4 1684 287 250 17 0 chr5 144169443 144169503 -8367756 + ID_B1 SINE B4 104 164 -60 4 1684 285 250 14 14 chr5 144169526 144169595 -8367664 + ID2 SINE ID 15 83 0 4 1684 449 279 29 0 chr5 144169752 144169856 -8367403 - ID_B1 SINE B4 -51 173 67 4 1684 715 239 43 16 chr5 144169948 144170135 -8367124 + B3A SINE B2 5 196 -2 4 1684 716 198 132 0 chr5 144170379 144170561 -8366698 + B3 SINE B2 3 208 -8 4 1684 239 298 107 0 chr5 144171136 144171151 -8366108 - ID_B1 SINE B4 -130 94 2 4 1684 263 304 29 0 chr5 144171151 144171220 -8366039 - ID4 SINE ID -11 72 2 4 1684 393 239 8 84 chr5 144171228 144171347 -8365912 - PB1D10 SINE Alu -7 110 1 4 1684 625 250 0 8 chr5 144171414 144171535 -8365724 + ID_B1 SINE B4 81 200 -24 4 1684 1049 110 80 0 chr5 144171555 144171718 -8365541 - B2_Mm2 SINE B2 0 195 20 4 1684 320 248 61 13 chr5 144171949 144172033 -8365226 + ID4 SINE ID 5 89 -63 4 1684 368 248 182 114 chr5 144172639 144172874 -8364385 - B4 SINE B4 -22 270 5 4 1684 491 185 73 18 chr5 144173716 144173826 -8363433 - PB1D10 SINE Alu 0 117 2 4 1684 312 155 291 87 chr5 144173723 144173850 -8363409 - ID_B1 SINE B4 -5 219 67 4 1684 405 0 0 0 chr5 144174405 144174450 -8362809 + (TG)n Simple_repeat Simple_repeat 1 45 0 4 1684 443 219 189 9 chr5 144174477 144174583 -8362676 - RSINE1 SINE B4 -34 131 7 4 1684 282 56 0 0 chr5 144174583 144174619 -8362640 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1684 186 43 0 0 chr5 144174687 144174710 -8362549 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1684 620 250 0 15 chr5 144174895 144175029 -8362230 + RSINE1 SINE B4 3 134 -31 4 1684 1515 62 5 15 chr5 144175162 144175357 -8361902 + B2_Mm1a SINE B2 1 193 0 4 1684 361 316 42 42 chr5 144175372 144175451 -8361808 + ID SINE ID 2 80 -144 4 1684 269 274 39 79 chr5 144175451 144175578 -8361681 + B1F1 SINE Alu 1 122 -27 4 1684 281 228 18 0 chr5 144175588 144175640 -8361619 + B3A SINE B2 4 56 -142 4 1684 266 271 17 0 chr5 144175640 144175694 -8361565 + B3A SINE B2 2 56 -142 4 1684 285 254 17 0 chr5 144175694 144175748 -8361511 + B3A SINE B2 2 56 -142 4 1684 285 254 17 0 chr5 144175748 144175802 -8361457 + B3A SINE B2 2 56 -142 4 1684 296 237 17 0 chr5 144175802 144175856 -8361403 + B3A SINE B2 2 56 -142 4 1684 270 271 17 0 chr5 144175856 144175910 -8361349 + B3A SINE B2 2 56 -142 4 1684 296 237 17 0 chr5 144175910 144175964 -8361295 + B3A SINE B2 2 56 -142 4 1684 296 237 17 0 chr5 144175964 144176018 -8361241 + B3A SINE B2 2 56 -142 4 1684 292 214 18 0 chr5 144176018 144176074 -8361185 + B3A SINE B2 2 58 -140 5 1684 498 246 122 29 chr5 144176075 144176247 -8361012 + B3A SINE B2 5 192 -6 5 1684 649 232 155 0 chr5 144176949 144177117 -8360142 + B3A SINE B2 5 198 0 5 1684 705 198 151 24 chr5 144177195 144177361 -8359898 - B3 SINE B2 -7 209 23 5 1684 377 259 153 0 chr5 144177375 144177506 -8359753 + B3A SINE B2 36 186 -12 5 1684 365 212 253 46 chr5 144177539 144177713 -8359546 + B3 SINE B2 7 216 0 5 1684 1433 39 60 0 chr5 144178135 144178317 -8358942 + B2_Mm2 SINE B2 2 194 -1 5 1684 538 275 62 46 chr5 144178337 144178577 -8358682 + L1M5 LINE L1 5579 5822 -357 5 1684 670 246 107 11 chr5 144178579 144178756 -8358503 + B3A SINE B2 2 195 -3 5 1684 378 0 0 0 chr5 144178977 144179019 -8358240 + (TG)n Simple_repeat Simple_repeat 2 43 0 5 1685 653 215 59 0 chr5 144179479 144179614 -8357645 + ID_B1 SINE B4 82 224 0 5 1685 564 275 221 9 chr5 144179635 144179866 -8357393 + B4 SINE B4 3 282 -10 5 1685 536 83 37 0 chr5 144179869 144179978 -8357281 + (CA)n Simple_repeat Simple_repeat 2 114 0 5 1685 395 268 192 52 chr5 144180063 144180256 -8357003 - Tigger5 DNA MER2_type -2167 239 20 5 1685 719 242 120 31 chr5 144180903 144181095 -8356164 + ID_B1 SINE B4 13 221 -3 5 1685 449 174 62 35 chr5 144181612 144181725 -8355534 - PB1D10 SINE Alu -1 116 1 5 1685 312 120 0 0 chr5 144182318 144182368 -8354891 + (T)n Simple_repeat Simple_repeat 1 50 0 5 1685 631 266 103 6 chr5 144183047 144183221 -8354038 + B3A SINE B2 1 191 -7 5 1685 369 261 35 18 chr5 144183862 144183975 -8353284 - PB1D9 SINE Alu -4 116 2 5 1685 1297 89 0 16 chr5 144184129 144184311 -8352948 + B2_Mm2 SINE B2 2 180 -15 5 1685 406 279 130 15 chr5 144184373 144184504 -8352755 + RSINE1 SINE B4 3 148 -17 5 1685 525 306 83 7 chr5 144184694 144184839 -8352420 + RSINE1 SINE B4 9 164 -1 5 1685 614 252 99 7 chr5 144184876 144185028 -8352231 - B3A SINE B2 -30 168 3 5 1685 491 185 106 32 chr5 144185255 144185378 -8351881 - B1_Mur1 SINE Alu 0 149 18 5 1685 382 248 28 9 chr5 144185428 144185534 -8351725 + PB1D10 SINE Alu 3 110 -7 5 1685 205 49 47 47 chr5 144185567 144185610 -8351649 + (TTTTTG)n Simple_repeat Simple_repeat 5 47 0 5 1685 983 128 0 14 chr5 144185610 144185753 -8351506 - B1_Mus2 SINE Alu 0 147 7 5 1685 232 305 8 0 chr5 144185652 144185780 -8351479 - ORR1B1-int LTR MaLR -755 754 626 5 1685 301 248 98 81 chr5 144185801 144185891 -8351368 + B4A SINE B4 109 204 -88 5 1685 3914 91 89 4 chr5 144185891 144186443 -8350816 - MT2B LTR ERVL -2 599 1 5 1685 301 248 98 81 chr5 144186443 144186475 -8350784 + B4A SINE B4 205 233 -59 5 1685 929 151 117 56 chr5 144186478 144186674 -8350585 + B3 SINE B2 4 211 -5 5 1685 764 128 128 0 chr5 144186694 144186819 -8350440 + B1_Mus2 SINE Alu 2 142 -5 5 1685 276 336 0 10 chr5 144186887 144186985 -8350274 + BC1_Mm scRNA scRNA 5 101 -51 5 1685 2558 148 89 9 chr5 144187107 144187569 -8349690 + RLTR19 LTR ERVK 1 499 0 5 1685 1011 274 22 4 chr5 144187692 144187967 -8349292 + B4A SINE B4 3 282 -10 5 1685 3174 6 5 47 chr5 144188291 144188674 -8348585 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1685 4361 91 84 28 chr5 144188674 144189379 -8347880 + IAPEz-int LTR ERVK 8 751 -5730 5 1685 10582 16 2 6 chr5 144191019 144192211 -8345048 + IAPEz-int LTR ERVK 4368 5554 -927 5 1685 7040 31 2 6 chr5 144192204 144193018 -8344241 + IAPEz-int LTR ERVK 5671 6481 0 5 1685 3174 6 5 47 chr5 144193018 144193401 -8343858 + IAPLTR1_Mm LTR ERVK 1 367 0 5 1685 825 176 49 7 chr5 144193425 144193568 -8343691 + B1_Mur4 SINE Alu 1 149 -1 5 1685 216 191 175 0 chr5 144193585 144193648 -8343611 + PB1D10 SINE Alu 3 76 -41 5 1685 324 143 0 0 chr5 144193660 144193716 -8343543 + (CAT)n Simple_repeat Simple_repeat 3 58 0 5 1685 825 233 148 130 chr5 144193841 144194005 -8343254 - MTE2a LTR MaLR -20 359 169 5 1685 1239 93 60 0 chr5 144194005 144194188 -8343071 + B2_Mm2 SINE B2 2 195 0 5 1685 825 233 148 130 chr5 144194188 144194368 -8342891 - MTE2a LTR MaLR -211 168 10 5 1685 21 57 0 0 chr5 144194417 144194452 -8342807 + AT_rich Low_complexity Low_complexity 1 35 0 5 1685 827 235 9 65 chr5 144194478 144194692 -8342567 - B3 SINE B2 -13 203 2 5 1685 466 221 113 15 chr5 144194696 144194829 -8342430 - B1_Mur1 SINE Alu -2 147 2 5 1685 611 256 30 30 chr5 144194927 144195092 -8342167 + B3A SINE B2 1 165 -33 5 1685 4995 160 34 55 chr5 144195574 144196496 -8340763 - RMER19B LTR ERVK 0 902 1 5 1685 482 295 70 76 chr5 144196633 144197003 -8340256 + RLTR4_MM-int LTR ERV1 1816 2183 -2507 5 1685 649 320 99 25 chr5 144197195 144197628 -8339631 + RLTR4_MM-int LTR ERV1 2633 3028 -4573 5 1685 1307 70 0 6 chr5 144197641 144197655 -8339604 - B2_Mm1t SINE B2 -19 174 161 5 1685 252 86 0 0 chr5 144197655 144197690 -8339569 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 5 1685 1307 70 0 6 chr5 144197690 144197848 -8339411 - B2_Mm1t SINE B2 -33 160 3 5 1685 3180 141 228 93 chr5 144198025 144198778 -8338481 + RMER19B LTR ERVK 1 867 -35 5 1685 2931 37 3 0 chr5 144198778 144199126 -8338133 + L1Md_F2 LINE L1 6234 6582 0 5 1685 3180 141 228 93 chr5 144199126 144199153 -8338106 + RMER19B LTR ERVK 868 886 -16 5 1685 518 44 15 0 chr5 144200722 144200790 -8336469 + B2_Mm1t SINE B2 1 69 -124 5 1685 673 38 255 0 chr5 144201874 144201980 -8335279 + B1_Mur4 SINE Alu 18 150 0 5 1685 516 290 71 28 chr5 144203154 144203440 -8333819 + IAPEY3-int LTR ERVK 3071 3499 -4181 5 1685 1615 139 14 28 chr5 144203472 144203756 -8333503 - RMER19B LTR ERVK 0 902 359 5 1685 525 224 198 139 chr5 144203763 144203783 -8333476 - RMER19B LTR ERVK -123 488 469 5 1685 1363 99 11 0 chr5 144203783 144203974 -8333285 + B2_Mm1a SINE B2 1 193 0 5 1685 707 162 266 59 chr5 144203974 144204195 -8333064 - RMER19B LTR ERVK -238 664 237 5 1685 4970 161 45 0 chr5 144204398 144205204 -8332055 - RMER19B LTR ERVK -11 891 50 5 1685 258 289 109 15 chr5 144206097 144206234 -8331025 + ETnERV2-int LTR ERVK 5390 5539 -1867 5 1685 1378 82 6 6 chr5 144207270 144207453 -8329806 - B2_Mm1a SINE B2 -8 185 3 5 1685 1316 105 184 21 chr5 144207478 144207768 -8329491 - ORR1B1 LTR MaLR -2 392 24 5 1685 314 133 45 91 chr5 144209300 144209366 -8327893 - B1F SINE Alu -1 148 86 5 1685 422 176 0 14 chr5 144209312 144209381 -8327878 - ID_B1 SINE B4 -7 217 150 5 1685 2906 112 31 14 chr5 144209381 144209826 -8327433 - RLTR11B LTR ERVK 0 453 1 5 1685 4626 238 87 63 chr5 144209885 144211318 -8325941 - MYSERV16_I-int LTR ERVK -73 2253 767 5 1685 1145 21 20 40 chr5 144211318 144211468 -8325791 + B1_Mus2 SINE Alu 1 147 0 5 1685 246 32 0 0 chr5 144211470 144211501 -8325758 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5 1685 4626 238 87 63 chr5 144211501 144211776 -8325483 - MYSERV16_I-int LTR ERVK -1560 766 505 5 1685 6777 206 39 31 chr5 144211808 144212921 -8324338 - MYSERV6-int LTR ERVK -4344 4615 2618 5 1685 1138 63 14 0 chr5 144212921 144213064 -8324195 - B1_Mus2 SINE Alu 0 147 3 5 1685 6777 202 38 32 chr5 144213064 144213493 -8323766 - MYSERV6-int LTR ERVK -5445 3514 3110 5 1685 11362 146 32 32 chr5 144213779 144214499 -8322760 + L1_Mur1 LINE L1 796 1503 -2409 5 1685 1601 43 0 0 chr5 144214499 144214684 -8322575 + B2_Mm1a SINE B2 1 185 -8 5 1685 11362 139 23 60 chr5 144214684 144214738 -8322521 + L1_Mur1 LINE L1 1504 1518 -2394 5 1685 2266 74 3 119 chr5 144214738 144215107 -8322152 + ORR1A3 LTR MaLR 1 326 0 5 1685 11362 139 23 60 chr5 144215107 144215899 -8321360 + L1_Mur1 LINE L1 1519 2310 -1602 5 1685 927 102 0 0 chr5 144215899 144216036 -8321223 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 5 1685 2251 68 7 0 chr5 144216042 144216336 -8320923 - L1_Mus1 LINE L1 -1 6566 6271 5 1685 11362 139 23 60 chr5 144216336 144217330 -8319929 + L1_Mur1 LINE L1 2316 3313 -599 5 1685 1346 77 43 5 chr5 144217330 144217514 -8319745 - B2_Mm2 SINE B2 -3 192 2 5 1685 11362 139 23 60 chr5 144217514 144217633 -8319626 + L1_Mur1 LINE L1 3314 3417 -495 5 1685 247 135 0 0 chr5 144218960 144218997 -8318262 + L1_Mur2 LINE L1 3483 3519 -2358 5 1685 3265 183 42 25 chr5 144218998 144219860 -8317399 + Lx2B LINE L1 6064 6991 -6 5 1685 5673 227 54 47 chr5 144219864 144221372 -8315887 - MYSERV6-int LTR ERVK -5835 3124 1606 5 1685 1825 336 43 35 chr5 144221486 144222716 -8314543 - MYSERV6-int LTR ERVK -7402 1557 58 5 1685 27 0 0 0 chr5 144222962 144222989 -8314270 + AT_rich Low_complexity Low_complexity 1 27 0 5 1685 2662 122 56 34 chr5 144223722 144224165 -8313094 - RLTR11B LTR ERVK 0 453 1 5 1685 515 243 106 14 chr5 144224165 144224307 -8312952 - ID_B1 SINE B4 -69 155 1 5 1685 570 340 35 35 chr5 144224474 144224763 -8312496 + B4A SINE B4 2 290 -2 5 1685 629 228 38 100 chr5 144226283 144226522 -8310737 + ID_B1 SINE B4 1 224 0 5 1685 682 182 16 16 chr5 144226710 144226833 -8310426 + RSINE1 SINE B4 4 126 -39 5 1685 513 310 32 118 chr5 144227215 144227499 -8309760 - ID_B1 SINE B4 -30 262 4 5 1685 379 216 36 73 chr5 144227499 144227609 -8309650 - B1F SINE Alu -2 147 42 5 1685 575 289 11 60 chr5 144228074 144228258 -8309001 - B3A SINE B2 -18 180 6 5 1685 315 0 0 0 chr5 144228353 144228388 -8308871 + (TG)n Simple_repeat Simple_repeat 2 36 0 5 1685 245 321 0 36 chr5 144228747 144228857 -8308402 + PB1D10 SINE Alu 5 110 -7 5 1685 606 274 6 78 chr5 144228866 144229032 -8308227 + RSINE1 SINE B4 3 156 -9 5 1685 408 151 16 32 chr5 144229084 144229207 -8308052 + (TCTG)n Simple_repeat Simple_repeat 4 124 0 5 1685 283 255 224 20 chr5 144229223 144229375 -8307884 + B2_Mm2 SINE B2 3 185 -10 5 1685 575 160 121 40 chr5 144229381 144229505 -8307754 + B1_Mus2 SINE Alu 1 134 -13 5 1685 297 191 0 0 chr5 144229505 144229552 -8307707 + B1_Mur4 SINE Alu 1 47 -103 5 1685 410 171 25 217 chr5 144229505 144229536 -8307723 + MT2B LTR ERVL 163 287 -314 5 1685 257 359 54 0 chr5 144229551 144229643 -8307616 + RSINE1 SINE B4 67 163 -2 5 1685 667 245 7 7 chr5 144229685 144229825 -8307434 + B1_Mur1 SINE Alu 2 141 -8 5 1685 1175 22 0 0 chr5 144229826 144229965 -8307294 + B1_Mus2 SINE Alu 7 145 -2 5 1685 253 299 11 11 chr5 144230107 144230195 -8307064 - BC1_Mm scRNA scRNA -59 93 6 5 1685 379 280 27 45 chr5 144230202 144230314 -8306945 - PB1D9 SINE Alu -5 115 6 5 1685 386 287 54 52 chr5 144230654 144230801 -8306458 - PB1D10 SINE Alu -10 139 1 5 1685 189 121 0 0 chr5 144230990 144231023 -8306236 + (T)n Simple_repeat Simple_repeat 1 33 0 5 1685 779 161 0 0 chr5 144231135 144231253 -8306006 + PB1D9 SINE Alu 3 120 0 5 1685 867 308 37 23 chr5 144231267 144231616 -8305643 + Lx8 LINE L1 7110 7463 -10 6 1685 552 246 106 0 chr5 144231915 144232057 -8305202 + RSINE1 SINE B4 5 161 -4 6 1685 207 133 85 8 chr5 144232146 144232275 -8304984 + (CA)n Simple_repeat Simple_repeat 1 139 0 6 1685 325 147 58 23 chr5 144232291 144232465 -8304794 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1685 211 255 202 10 chr5 144232465 144232564 -8304695 + MIRb SINE MIR 103 220 -48 6 1685 252 311 36 64 chr5 144232635 144232745 -8304514 + MER94 DNA AcHobo 22 128 -6 6 1685 207 0 0 0 chr5 144232819 144232842 -8304417 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 6 1685 703 110 0 9 chr5 144232892 144233002 -8304257 - B1_Mus1 SINE Alu 0 148 40 6 1685 500 243 101 145 chr5 144233117 144233324 -8303935 - B3A SINE B2 0 198 1 6 1685 270 0 0 0 chr5 144233337 144233367 -8303892 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1685 379 253 25 13 chr5 144233598 144233706 -8303553 - B4A SINE B4 -119 105 1 6 1685 225 0 0 0 chr5 144233778 144233803 -8303456 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1685 547 302 57 26 chr5 144234206 144234400 -8302859 + B4A SINE B4 4 203 -89 6 1685 465 249 404 10 chr5 144234578 144234787 -8302472 + B4A SINE B4 2 292 0 6 1685 309 68 0 0 chr5 144235135 144235179 -8302080 + (TG)n Simple_repeat Simple_repeat 1 44 0 6 1685 567 278 15 8 chr5 144235183 144235317 -8301942 - RSINE1 SINE B4 -28 137 3 6 1685 705 234 80 20 chr5 144235953 144236154 -8301105 - ID_B1 SINE B4 -10 214 2 6 1685 343 269 5 26 chr5 144236363 144236474 -8300785 + RSINE1 SINE B4 3 112 -180 6 1685 209 167 48 0 chr5 144236833 144236875 -8300384 + T-rich Low_complexity Low_complexity 5 48 0 6 1685 913 145 7 0 chr5 144236900 144237038 -8300221 - B1_Mus2 SINE Alu -7 140 2 6 1685 519 135 11 11 chr5 144237110 144237200 -8300059 - B3A SINE B2 -106 92 3 6 1685 857 251 5 26 chr5 144237272 144237464 -8299795 - ID_B1 SINE B4 -1 223 36 6 1685 761 214 71 0 chr5 144237832 144237972 -8299287 - RSINE1 SINE B4 -2 163 14 6 1685 567 71 0 0 chr5 144237983 144238068 -8299191 + (TTCC)n Simple_repeat Simple_repeat 2 86 0 6 1685 361 229 94 9 chr5 144238069 144238175 -8299084 - PB1D10 SINE Alu -2 115 1 6 1685 397 294 117 31 chr5 144238340 144238546 -8298713 + B4 SINE B4 78 274 -18 6 1685 791 234 6 0 chr5 144238738 144238896 -8298363 + B3A SINE B2 1 159 -39 6 1685 387 263 29 10 chr5 144238899 144239042 -8298217 + B3A SINE B2 66 213 -3 6 1685 357 314 49 0 chr5 144239044 144239146 -8298113 + ID_B1 SINE B4 115 221 -3 6 1685 346 180 160 0 chr5 144239481 144239581 -8297678 + B1F1 SINE Alu 34 149 0 6 1685 322 225 87 0 chr5 144239905 144240004 -8297255 + PB1D10 SINE Alu 2 109 -41 6 1685 579 29 0 0 chr5 144240027 144240096 -8297163 + (TCCC)n Simple_repeat Simple_repeat 3 71 0 6 1685 306 333 59 39 chr5 144240096 144240249 -8297010 - HAL1-3A_ME LINE L1 -419 2439 2284 6 1685 278 290 14 0 chr5 144240267 144240336 -8296923 - ID4 SINE ID -13 70 1 6 1685 726 227 132 52 chr5 144240438 144240689 -8296570 - ORR1D1 LTR MaLR 0 374 104 6 1685 309 268 61 0 chr5 144240828 144240910 -8296349 + PB1D10 SINE Alu 31 117 0 6 1685 686 234 0 34 chr5 144240912 144241058 -8296201 + B1_Mur3 SINE Alu 2 142 -7 6 1685 873 258 21 41 chr5 144241090 144241333 -8295926 + B4A SINE B4 1 238 -54 6 1685 228 67 0 0 chr5 144241333 144241363 -8295896 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1685 1600 31 10 5 chr5 144241697 144241889 -8295370 + B2_Mm1a SINE B2 1 193 0 6 1685 417 274 17 126 chr5 144242191 144242366 -8294893 + B4 SINE B4 15 170 -122 6 1685 578 221 35 42 chr5 144242860 144243002 -8294257 - B1_Mur1 SINE Alu 0 149 9 6 1685 180 0 0 0 chr5 144243048 144243068 -8294191 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6 1685 1738 221 136 82 chr5 144243126 144243544 -8293715 - RLTR40 LTR ERVK -47 770 288 6 1685 207 0 0 0 chr5 144243544 144243567 -8293692 + (CA)n Simple_repeat Simple_repeat 2 24 0 6 1685 1738 221 136 82 chr5 144243567 144243624 -8293635 - RLTR40 LTR ERVK -530 287 240 6 1685 720 153 194 0 chr5 144243624 144243748 -8293511 + B1_Mur4 SINE Alu 2 149 -1 6 1685 1738 221 136 82 chr5 144243748 144243976 -8293283 - RLTR40 LTR ERVK -578 239 28 6 1685 433 256 12 0 chr5 144243985 144244067 -8293192 - RSINE1 SINE B4 -80 85 3 6 1685 222 128 0 0 chr5 144244230 144244269 -8292990 + (TG)n Simple_repeat Simple_repeat 1 39 0 6 1685 292 252 114 36 chr5 144244274 144244414 -8292845 - B4A SINE B4 -15 277 127 6 1685 354 45 0 0 chr5 144244434 144244478 -8292781 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1685 431 250 29 0 chr5 144244546 144244650 -8292609 - PB1D10 SINE Alu 0 117 11 6 1685 304 283 9 100 chr5 144244574 144244684 -8292575 - B4A SINE B4 -128 164 65 6 1685 227 307 0 114 chr5 144244756 144244870 -8292389 + B4A SINE B4 192 292 0 6 1685 306 0 0 0 chr5 144244880 144244914 -8292345 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 6 1685 468 200 0 0 chr5 144245284 144245424 -8291835 + (TG)n Simple_repeat Simple_repeat 2 141 0 6 1685 319 271 14 0 chr5 144245424 144245494 -8291765 - ID4_ SINE ID -11 72 2 6 1685 1165 51 0 0 chr5 144245518 144245656 -8291603 + B1_Mus1 SINE Alu 2 139 -9 6 1685 351 0 0 0 chr5 144245656 144245695 -8291564 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 6 1685 441 0 0 0 chr5 144245708 144245757 -8291502 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1685 384 334 9 2 chr5 144245758 144245866 -8291393 - RSINE1 SINE B4 -181 111 1 6 1685 438 20 0 0 chr5 144245884 144245935 -8291324 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1685 662 266 32 19 chr5 144246103 144246260 -8290999 + RSINE1 SINE B4 3 161 -4 6 1685 324 278 3 14 chr5 144246285 144246364 -8290895 + PB1D10 SINE Alu 2 58 -59 6 1685 5013 214 88 63 chr5 144246364 144247373 -8289886 + RLTR21 LTR ERVK 1 1048 -524 6 1685 333 0 0 0 chr5 144247373 144247410 -8289849 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1685 5013 214 88 63 chr5 144247410 144247934 -8289325 + RLTR21 LTR ERVK 1049 1572 0 6 1685 535 218 39 46 chr5 144248473 144248592 -8288667 + PB1D10 SINE Alu 1 118 -31 6 1685 260 278 165 64 chr5 144248592 144248780 -8288479 + B4 SINE B4 4 210 -82 6 1685 279 253 141 11 chr5 144249113 144249205 -8288054 + PB1D10 SINE Alu 4 107 -10 6 1685 786 230 7 20 chr5 144249237 144249388 -8287871 + B3 SINE B2 52 200 -16 6 1685 492 165 0 67 chr5 144249431 144249535 -8287724 + PB1D9 SINE Alu 18 114 -6 6 1685 480 202 77 0 chr5 144250054 144250158 -8287101 + PB1D10 SINE Alu 1 112 -5 6 1685 407 275 73 119 chr5 144250442 144250460 -8286799 + CYRA11_Mm Unknown Y-chromosome 154 254 -363 6 1685 1149 158 50 46 chr5 144250460 144250679 -8286580 - URR1B DNA MER1_type 0 225 6 6 1685 407 275 73 119 chr5 144250679 144250702 -8286557 + CYRA11_Mm Unknown Y-chromosome 255 401 -216 6 1685 189 107 0 0 chr5 144251139 144251167 -8286092 + (TG)n Simple_repeat Simple_repeat 1 28 0 6 1685 312 311 65 9 chr5 144251213 144251320 -8285939 + B1F SINE Alu 37 149 0 6 1685 286 241 35 0 chr5 144251326 144251413 -8285846 + (TGGA)n Simple_repeat Simple_repeat 2 91 0 6 1685 243 263 26 0 chr5 144251413 144251489 -8285770 - L1MB3 LINE L1 -30 6153 6076 6 1685 287 113 19 0 chr5 144251628 144251681 -8285578 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1685 539 186 0 0 chr5 144251697 144251783 -8285476 - B4A SINE B4 -18 274 189 6 1685 418 307 10 60 chr5 144251811 144252012 -8285247 + B4A SINE B4 1 191 -101 6 1685 332 272 9 19 chr5 144252002 144252107 -8285152 + B1F2 SINE Alu 14 117 -32 6 1685 333 0 0 0 chr5 144252153 144252190 -8285069 + (CA)n Simple_repeat Simple_repeat 1 37 0 6 1685 384 290 197 11 chr5 144252301 144252479 -8284780 + ID_B1 SINE B4 2 212 -12 6 1685 736 244 47 42 chr5 144252578 144252605 -8284654 - B3 SINE B2 -1 215 189 6 1685 1131 68 14 7 chr5 144252605 144252752 -8284507 - B1_Mus1 SINE Alu 0 148 1 6 1685 736 244 47 42 chr5 144252752 144252938 -8284321 - B3 SINE B2 -28 188 1 6 1685 1014 171 43 77 chr5 144253021 144253033 -8284226 - URR1A DNA MER1_type 0 226 208 6 1685 495 0 0 0 chr5 144253033 144253088 -8284171 + (TTCC)n Simple_repeat Simple_repeat 4 58 0 6 1685 1014 171 43 77 chr5 144253088 144253219 -8284040 - URR1A DNA MER1_type -19 207 78 6 1685 664 82 273 0 chr5 144253219 144253329 -8283930 + B1_Mus1 SINE Alu 5 144 -4 6 1685 1014 171 43 77 chr5 144253329 144253418 -8283841 - URR1A DNA MER1_type -149 77 2 6 1685 195 42 0 0 chr5 144253778 144253802 -8283457 + (CG)n Simple_repeat Simple_repeat 2 25 0 6 1685 487 258 82 50 chr5 144253802 144253951 -8283308 - RSINE1 SINE B4 -8 157 2 6 1685 241 250 28 234 chr5 144254002 144254044 -8283215 + B1F SINE Alu 32 64 -85 6 1685 907 242 78 26 chr5 144254044 144254315 -8282944 + B4A SINE B4 4 288 -4 6 1685 241 250 28 234 chr5 144254315 144254329 -8282930 + B1F SINE Alu 65 68 -81 6 1685 448 106 12 12 chr5 144254329 144254415 -8282844 + (CA)n Simple_repeat Simple_repeat 1 86 0 6 1685 270 307 0 54 chr5 144254415 144254450 -8282809 + ID_B1 SINE B4 166 199 -25 6 1685 241 250 28 234 chr5 144254450 144254498 -8282761 + B1F SINE Alu 69 143 -6 6 1685 423 0 0 0 chr5 144254524 144254571 -8282688 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1685 542 267 26 40 chr5 144254576 144254728 -8282531 - B3A SINE B2 -48 150 1 6 1685 1391 63 24 78 chr5 144255119 144255324 -8281935 - B2_Mm2 SINE B2 -1 194 1 6 1685 231 250 19 0 chr5 144255643 144255686 -8281573 + ID SINE ID 8 51 -173 6 1685 359 222 14 14 chr5 144255686 144255759 -8281500 + PB1D10 SINE Alu 1 73 -44 6 1685 296 200 105 12 chr5 144255899 144255985 -8281274 - ID_B1 SINE B4 -21 203 110 6 1685 339 25 0 0 chr5 144256063 144256103 -8281156 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1685 714 225 21 53 chr5 144256132 144256173 -8281086 - B3A SINE B2 -16 182 149 6 1685 252 0 0 0 chr5 144256173 144256201 -8281058 + (TG)n Simple_repeat Simple_repeat 2 29 0 7 1685 714 225 21 53 chr5 144256201 144256347 -8280912 - B3A SINE B2 -50 148 1 6 1685 426 254 91 455 chr5 144256357 144256386 -8280873 - B3A SINE B2 0 195 174 7 1685 388 244 0 47 chr5 144256386 144256472 -8280787 + ID4 SINE ID 2 83 0 7 1685 426 273 151 78 chr5 144256472 144256641 -8280618 - B3A SINE B2 -15 183 1 7 1685 210 143 0 0 chr5 144256645 144256680 -8280579 + (T)n Simple_repeat Simple_repeat 1 35 0 7 1685 274 273 64 13 chr5 144256727 144256805 -8280454 - RSINE1 SINE B4 -1 164 83 7 1685 1196 44 0 0 chr5 144257076 144257213 -8280046 + B1_Mm SINE Alu 2 138 -9 7 1685 216 0 0 0 chr5 144257213 144257237 -8280022 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1685 1044 140 42 26 chr5 144257319 144257510 -8279749 + B2_Mm2 SINE B2 2 195 0 7 1685 1531 43 10 26 chr5 144257555 144257748 -8279511 + B2_Mm2 SINE B2 3 192 -3 7 1685 3270 131 64 138 chr5 144257829 144258643 -8278616 - RMER6A LTR ERVK 0 756 3 7 1685 488 213 16 18 chr5 144258645 144258775 -8278484 - PB1D9 SINE Alu -17 130 2 7 1685 980 131 234 0 chr5 144259044 144259219 -8278040 - B3 SINE B2 0 216 1 7 1685 243 0 0 0 chr5 144259240 144259267 -8277992 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7 1685 416 127 40 53 chr5 144259273 144259348 -8277911 - B1_Mur3 SINE Alu -17 132 59 7 1685 929 68 0 0 chr5 144259367 144259485 -8277774 - B1_Mus1 SINE Alu 0 148 31 7 1685 354 297 34 52 chr5 144259660 144259843 -8277416 - RSINE1 SINE B4 -11 281 78 7 1685 366 107 0 0 chr5 144260533 144260589 -8276670 + (CA)n Simple_repeat Simple_repeat 1 56 0 7 1685 442 281 31 15 chr5 144260901 144261031 -8276228 - B1F SINE Alu 0 149 18 7 1685 291 215 9 162 chr5 144261305 144261416 -8275843 - PB1D10 SINE Alu -22 95 2 7 1685 216 0 0 0 chr5 144261553 144261577 -8275682 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1685 1235 27 0 20 chr5 144261577 144261726 -8275533 - B1_Mus2 SINE Alu 0 147 2 7 1685 326 183 41 27 chr5 144262482 144262555 -8274704 + ID4 SINE ID 1 74 -9 7 1685 236 333 0 0 chr5 144262617 144262680 -8274579 + ID_B1 SINE B4 94 156 -68 7 1685 286 252 51 0 chr5 144262625 144262698 -8274561 + B1F SINE Alu 21 99 -21 7 1685 281 209 30 0 chr5 144262711 144262778 -8274481 + ID4 SINE ID 1 69 -14 7 1685 292 352 26 80 chr5 144262812 144262963 -8274296 + RSINE1 SINE B4 17 159 -6 7 1685 414 132 196 11 chr5 144263143 144263235 -8274024 - PB1D9 SINE Alu 0 120 12 7 1685 785 190 106 12 chr5 144263241 144263401 -8273858 - ID_B1 SINE B4 0 224 50 7 1685 378 237 0 0 chr5 144263501 144263598 -8273661 + (CA)n Simple_repeat Simple_repeat 1 97 0 7 1685 222 118 0 0 chr5 144264467 144264501 -8272758 + (T)n Simple_repeat Simple_repeat 1 34 0 7 1685 873 126 28 7 chr5 144264506 144264650 -8272609 - B1_Mus1 SINE Alu 0 148 2 7 1685 21 0 0 0 chr5 144265278 144265299 -8271960 + AT_rich Low_complexity Low_complexity 1 21 0 7 1685 349 281 82 8 chr5 144265322 144265444 -8271815 + ID_B1 SINE B4 90 220 -4 7 1685 372 252 64 27 chr5 144265505 144265615 -8271644 + B1_Mur4 SINE Alu 12 125 -25 7 1685 332 278 25 92 chr5 144271810 144271974 -8265285 + B4 SINE B4 2 290 -2 7 1685 338 0 24 0 chr5 144272088 144272130 -8265129 + (CA)n Simple_repeat Simple_repeat 2 44 0 7 1685 375 23 0 0 chr5 144272164 144272208 -8265051 + (TTTCC)n Simple_repeat Simple_repeat 5 48 0 7 1685 747 144 17 0 chr5 144272208 144272326 -8264933 - PB1D9 SINE Alu 0 120 1 7 1685 555 218 113 0 chr5 144272915 144273039 -8264220 + B1_Mur3 SINE Alu 5 142 -7 7 1685 511 219 18 0 chr5 144274162 144274276 -8262983 - PB1D9 SINE Alu -3 117 2 7 1685 225 0 0 0 chr5 144274581 144274606 -8262653 + (ACATG)n Simple_repeat Simple_repeat 3 27 0 7 1685 675 240 141 0 chr5 144274883 144275075 -8262184 - ID_B1 SINE B4 -4 220 2 7 1685 266 279 112 28 chr5 144275102 144275209 -8262050 - PB1D7 SINE Alu 0 120 5 7 1685 22 35 0 0 chr5 144275344 144275373 -8261886 + AT_rich Low_complexity Low_complexity 1 29 0 7 1685 237 278 0 93 chr5 144276208 144276315 -8260944 + MT2B2 LTR ERVL 169 265 -319 7 1685 433 218 37 29 chr5 144276227 144276342 -8260917 + PB1D10 SINE Alu 24 149 0 7 1685 215 253 101 0 chr5 144276376 144276455 -8260804 + PB1D10 SINE Alu 31 117 0 7 1685 666 256 108 54 chr5 144276485 144276558 -8260701 - B3A SINE B2 -1 197 133 7 1685 3273 48 13 0 chr5 144276558 144276952 -8260307 + MTB LTR MaLR 2 400 0 7 1685 666 256 108 54 chr5 144276952 144277064 -8260195 - B3A SINE B2 -66 132 2 7 1685 1471 75 16 0 chr5 144277106 144277294 -8259965 - B2_Mm2 SINE B2 -4 191 1 7 1685 31 26 0 0 chr5 144278748 144278786 -8258473 + AT_rich Low_complexity Low_complexity 1 38 0 7 1685 181 304 110 51 chr5 144279250 144279368 -8257891 + MIR SINE MIR 20 144 -118 7 1685 385 326 44 0 chr5 144279449 144279584 -8257675 + B1F1 SINE Alu 9 149 0 7 1685 264 197 131 0 chr5 144279725 144279786 -8257473 + ID4_ SINE ID 5 73 -10 7 1685 1209 169 26 44 chr5 144279996 144280225 -8257034 + URR1B DNA MER1_type 1 225 0 7 1685 284 280 47 47 chr5 144280350 144280436 -8256823 - RSINE1 SINE B4 -79 86 1 7 1685 333 285 37 89 chr5 144280436 144280555 -8256704 - B1F2 SINE Alu -37 112 1 7 1685 1281 99 0 0 chr5 144280615 144280787 -8256472 + B2_Mm2 SINE B2 2 173 -22 7 1685 230 98 73 103 chr5 144280827 144280863 -8256396 + B2_Mm1a SINE B2 127 162 -31 7 1685 270 0 0 0 chr5 144280863 144280893 -8256366 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 7 1685 230 98 73 103 chr5 144280893 144280924 -8256335 + B2_Mm1a SINE B2 163 192 -1 7 1685 217 296 0 0 chr5 144280956 144281010 -8256249 + ID_B1 SINE B4 43 96 -128 7 1685 712 112 156 23 chr5 144281689 144281817 -8255442 + B1_Mur4 SINE Alu 5 149 -1 7 1685 408 315 191 0 chr5 144281831 144281993 -8255266 + B3A SINE B2 1 193 -5 7 1685 270 238 34 56 chr5 144282014 144282103 -8255156 + PB1D10 SINE Alu 24 110 -7 7 1685 258 229 32 32 chr5 144282121 144282184 -8255075 + ID4 SINE ID 12 74 -9 7 1685 1289 44 0 6 chr5 144282257 144282416 -8254843 + B2_Mm1t SINE B2 3 160 -33 7 1685 342 0 0 0 chr5 144282416 144282454 -8254805 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 7 1685 1180 81 0 0 chr5 144282463 144282611 -8254648 + B1_Mus1 SINE Alu 1 148 0 7 1685 391 233 178 17 chr5 144282740 144282858 -8254401 + ID_B1 SINE B4 85 221 -3 7 1685 847 259 0 30 chr5 144282862 144283065 -8254194 + B3A SINE B2 1 197 -1 7 1685 204 125 0 0 chr5 144283441 144283473 -8253786 + (CATA)n Simple_repeat Simple_repeat 3 34 0 7 1685 219 114 0 0 chr5 144283567 144283602 -8253657 + (GA)n Simple_repeat Simple_repeat 2 36 0 7 1685 1105 173 34 29 chr5 144283625 144283833 -8253426 + B3 SINE B2 1 209 -7 7 1685 211 278 105 53 chr5 144284140 144284216 -8253043 + B1F2 SINE Alu 1 80 -69 7 1685 330 322 0 0 chr5 144284220 144284307 -8252952 + BC1_Mm scRNA scRNA 3 89 -63 7 1685 890 161 213 11 chr5 144284741 144284929 -8252330 - URR1A DNA MER1_type 0 226 1 7 1685 858 189 29 98 chr5 144285060 144285096 -8252163 + B3 SINE B2 5 43 -173 7 1685 1134 56 35 0 chr5 144285096 144285238 -8252021 + B1_Mm SINE Alu 1 147 0 7 1685 858 189 29 98 chr5 144285238 144285406 -8251853 + B3 SINE B2 44 194 -22 7 1685 319 233 276 11 chr5 144285432 144285519 -8251740 + PB1D9 SINE Alu 10 119 -1 7 1685 473 281 93 27 chr5 144285527 144285666 -8251593 + RSINE1 SINE B4 3 151 -14 7 1685 855 93 19 0 chr5 144285666 144285828 -8251431 + (CA)n Simple_repeat Simple_repeat 1 165 0 7 1685 702 188 180 11 chr5 144286191 144286369 -8250890 + B3 SINE B2 2 209 -7 7 1685 372 256 257 44 chr5 144286717 144287036 -8250223 - Lx8 LINE L1 -140 7333 6947 7 1685 183 42 0 0 chr5 144288680 144288704 -8248555 + (CGG)n Simple_repeat Simple_repeat 2 25 0 7 1685 192 40 0 0 chr5 144288955 144288980 -8248279 + (CCCG)n Simple_repeat Simple_repeat 4 28 0 7 1685 27 0 0 0 chr5 144289048 144289075 -8248184 + GC_rich Low_complexity Low_complexity 1 27 0 7 1685 496 233 78 0 chr5 144289316 144289386 -8247873 + ID SINE ID 4 83 -141 7 1685 308 205 24 82 chr5 144289386 144289471 -8247788 + PB1D10 SINE Alu 1 80 -37 7 1685 477 250 64 105 chr5 144289471 144289690 -8247569 + ID_B1 SINE B4 5 214 -10 7 1685 649 317 82 20 chr5 144289936 144290181 -8247078 - B4A SINE B4 0 292 33 7 1685 664 250 23 40 chr5 144290198 144290373 -8246886 + B3A SINE B2 25 196 -2 7 1685 308 291 112 20 chr5 144290453 144290702 -8246557 + HAL1 LINE L1 1243 1514 -993 7 1685 309 304 96 104 chr5 144290731 144290856 -8246403 + RSINE1 SINE B4 13 136 -29 7 1685 571 288 0 0 chr5 144290861 144290979 -8246280 + RSINE1 SINE B4 3 120 -45 7 1685 189 0 0 0 chr5 144290983 144291004 -8246255 + (CA)n Simple_repeat Simple_repeat 2 22 0 7 1685 1209 54 7 0 chr5 144291116 144291263 -8245996 + B1_Mus1 SINE Alu 1 148 0 7 1685 366 77 0 0 chr5 144291263 144291310 -8245949 + (A)n Simple_repeat Simple_repeat 1 47 0 7 1685 559 169 0 151 chr5 144291321 144291460 -8245799 + PB1D9 SINE Alu 2 119 -1 7 1685 234 355 59 36 chr5 144291483 144291644 -8245615 + HAL1 LINE L1 1564 1724 -783 7 1685 186 43 0 0 chr5 144291644 144291667 -8245592 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 7 1685 234 355 59 36 chr5 144291667 144291724 -8245535 + HAL1 LINE L1 1725 1787 -720 7 1685 327 323 0 97 chr5 144291929 144292104 -8245155 + RSINE1 SINE B4 4 161 -4 7 1685 871 169 15 0 chr5 144292129 144292265 -8244994 + B1_Mur1 SINE Alu 7 144 -5 7 1685 258 32 0 0 chr5 144292265 144292296 -8244963 + (GA)n Simple_repeat Simple_repeat 1 31 0 8 1685 654 191 88 7 chr5 144292301 144292438 -8244821 - B1_Mur1 SINE Alu 0 149 2 8 1685 578 282 55 22 chr5 144292492 144292673 -8244586 + B3A SINE B2 5 191 -7 8 1685 315 0 0 0 chr5 144292700 144292735 -8244524 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8 1685 814 85 126 44 chr5 144292735 144292755 -8244504 - B1_Mus1 SINE Alu -8 140 126 8 1685 3405 43 2 0 chr5 144292755 144293150 -8244109 + MTA_Mm LTR MaLR 1 396 0 8 1685 814 85 126 44 chr5 144293150 144293255 -8244004 - B1_Mus1 SINE Alu -23 125 4 8 1685 860 118 79 29 chr5 144293506 144293646 -8243613 - B1_Mus2 SINE Alu 0 147 1 8 1685 1270 34 7 0 chr5 144293716 144293862 -8243397 - B1_Mm SINE Alu 0 147 1 8 1685 236 203 49 33 chr5 144294031 144294092 -8243167 - B3 SINE B2 -30 186 125 8 1685 1029 221 29 5 chr5 144294093 144294298 -8242961 + B3 SINE B2 2 211 -5 8 1685 1049 136 0 6 chr5 144294359 144294537 -8242722 + (GGAGAA)n Simple_repeat Simple_repeat 3 179 0 8 1685 266 287 152 38 chr5 144294553 144294658 -8242601 - B3A SINE B2 -55 143 27 8 1685 258 105 0 0 chr5 144294658 144294696 -8242563 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1685 1250 61 0 0 chr5 144294696 144294843 -8242416 - B1_Mus2 SINE Alu 0 147 1 8 1685 250 214 34 32 chr5 144294855 144294933 -8242326 - MLT1A0 LTR MaLR -2 372 286 8 1685 244 281 119 33 chr5 144295049 144295084 -8242175 + RSINE1 SINE B4 2 37 -128 8 1685 1035 130 0 0 chr5 144295084 144295230 -8242029 + B1_Mus1 SINE Alu 1 146 -2 8 1685 344 243 56 13 chr5 144295230 144295345 -8241914 + B4A SINE B4 223 292 0 8 1685 22 35 0 0 chr5 144295401 144295430 -8241829 + AT_rich Low_complexity Low_complexity 1 29 0 8 1685 1290 20 0 7 chr5 144295430 144295579 -8241680 + B1_Mus1 SINE Alu 1 148 0 8 1685 342 0 0 0 chr5 144295644 144295682 -8241577 + (TATG)n Simple_repeat Simple_repeat 3 40 0 8 1685 429 243 87 40 chr5 144295688 144295838 -8241421 - B3A SINE B2 -41 157 1 8 1685 447 260 10 0 chr5 144295863 144295959 -8241300 - B1_Mur2 SINE Alu -52 97 1 8 1685 823 233 22 71 chr5 144296187 144296377 -8240882 - B3 SINE B2 0 216 36 8 1685 1389 74 6 0 chr5 144296377 144296553 -8240706 + B2_Mm1t SINE B2 1 177 -16 8 1685 519 17 0 0 chr5 144296553 144296613 -8240646 + (GA)n Simple_repeat Simple_repeat 1 60 0 8 1685 823 233 22 71 chr5 144296613 144296647 -8240612 - B3 SINE B2 -181 35 3 8 1685 1072 37 81 0 chr5 144296752 144296888 -8240371 + B1_Mus2 SINE Alu 1 147 0 8 1685 214 53 16 66 chr5 144296888 144296949 -8240310 + (CAAAA)n Simple_repeat Simple_repeat 1 58 0 8 1685 775 241 0 0 chr5 144296963 144297108 -8240151 + B1_Mur1 SINE Alu 5 149 0 8 1685 1367 119 17 46 chr5 144297156 144297457 -8239802 - ZP3AR Satellite Satellite -35 292 1 8 1685 367 306 0 93 chr5 144297465 144297616 -8239643 + MT2B LTR ERVL 131 267 -334 8 1685 632 248 53 0 chr5 144297512 144297645 -8239614 + B1_Mur2 SINE Alu 7 146 -3 8 1685 561 119 356 0 chr5 144297685 144297786 -8239473 - B1_Mus1 SINE Alu -7 141 5 8 1685 25 0 0 0 chr5 144298132 144298157 -8239102 + AT_rich Low_complexity Low_complexity 1 25 0 8 1685 555 272 17 56 chr5 144298161 144298358 -8238901 + B4A SINE B4 43 229 -63 8 1685 981 118 35 7 chr5 144298358 144298503 -8238756 + B1_Mur4 SINE Alu 1 149 -1 8 1685 555 243 21 56 chr5 144298503 144298522 -8238737 + B4A SINE B4 230 246 -46 8 1685 470 103 11 0 chr5 144298592 144298679 -8238580 + (CA)n Simple_repeat Simple_repeat 1 88 0 8 1685 435 325 0 53 chr5 144298864 144298997 -8238262 - ID_B1 SINE B4 0 224 99 8 1685 304 287 61 48 chr5 144299005 144299060 -8238199 + YREP_Mm Unknown Unknown 127 293 -1519 8 1685 531 254 18 0 chr5 144299060 144299170 -8238089 - ID_B1 SINE B4 -8 216 105 8 1685 302 243 40 13 chr5 144299107 144299182 -8238077 - PB1D7 SINE Alu -31 89 13 8 1685 219 240 20 0 chr5 144299168 144299218 -8238041 + RSINE1 SINE B4 79 129 -36 8 1685 1169 269 63 19 chr5 144299299 144299652 -8237607 - RMER19C LTR ERVK -151 460 2 8 1685 1179 218 10 40 chr5 144299664 144299960 -8237299 - RodERV21-int LTR ERV1 -1976 3015 2729 8 1685 847 150 75 40 chr5 144301107 144301281 -8235978 + B2_Mm2 SINE B2 1 180 -15 8 1685 286 317 50 61 chr5 144302082 144302506 -8234753 - RodERV21-int LTR ERV1 -3034 4057 3639 8 1685 1181 70 0 0 chr5 144302576 144302718 -8234541 + B1_Mm SINE Alu 1 142 -5 8 1685 4100 200 96 32 chr5 144302825 144303839 -8233420 - RodERV21-int LTR ERV1 -2280 2711 1633 8 1685 936 220 73 16 chr5 144303848 144304093 -8233166 + RMER4B LTR ERVK 19 277 -308 8 1685 285 183 167 0 chr5 144304105 144304165 -8233094 + RMER4B LTR ERVK 343 412 -173 8 1685 1537 185 18 18 chr5 144304245 144304526 -8232733 - RodERV21-int LTR ERV1 -3351 1640 1360 8 1685 180 77 0 0 chr5 144304532 144304558 -8232701 + (T)n Simple_repeat Simple_repeat 1 26 0 8 1685 180 244 128 0 chr5 144304572 144304650 -8232609 + L3 LINE CR1 851 938 -3551 8 1685 436 203 108 7 chr5 144304650 144304789 -8232470 - RodERV21-int LTR ERV1 -4578 413 261 8 1685 699 225 82 6 chr5 144304904 144305087 -8232172 - RodERV21-int LTR ERV1 -4782 209 13 8 1685 229 275 228 11 chr5 144305151 144305243 -8232016 - RMER21B LTR ERV1 -275 567 456 8 1685 443 132 0 14 chr5 144305285 144305354 -8231905 + RMER4B LTR ERVK 99 166 -419 8 1685 1109 211 147 51 chr5 144305359 144305812 -8231447 - RMER4B LTR ERVK -37 548 17 8 1685 547 258 64 32 chr5 144305992 144306148 -8231111 - B3A SINE B2 -37 161 1 8 1685 353 234 92 41 chr5 144306153 144306251 -8231008 - PB1 SINE Alu -1 126 24 8 1685 2810 150 80 13 chr5 144306313 144306839 -8230420 - RLTR31_Mm LTR ERVK 0 561 1 8 1685 846 310 51 27 chr5 144306893 144307188 -8230071 - RMER15 LTR ERVL -1 574 273 8 1685 247 259 30 145 chr5 144307215 144307346 -8229913 - RMER15 LTR ERVL -445 130 15 8 1685 448 220 4 0 chr5 144307342 144307437 -8229822 - PB1D7 SINE Alu -47 102 5 8 1685 721 197 0 0 chr5 144307560 144307677 -8229582 + B3 SINE B2 4 120 -96 8 1685 1341 70 0 26 chr5 144307891 144308081 -8229178 - MTB_Mm LTR MaLR -222 185 1 8 1685 327 197 15 15 chr5 144308172 144308239 -8229020 - MTD LTR MaLR -12 409 343 8 1685 884 182 14 0 chr5 144308252 144308395 -8228864 - B1_Mur4 SINE Alu 0 150 6 8 1685 651 257 8 120 chr5 144308519 144308713 -8228546 - MTD LTR MaLR -211 208 35 8 1685 1176 149 32 9 chr5 144308713 144308929 -8228330 - URR1B DNA MER1_type -4 221 1 8 1685 638 250 5 143 chr5 144308929 144308966 -8228293 - MTD LTR MaLR -387 34 3 8 1685 458 314 0 8 chr5 144308970 144309089 -8228170 - RSINE1 SINE B4 -46 119 2 8 1685 621 228 82 17 chr5 144309154 144309329 -8227930 - B3A SINE B2 -5 211 34 8 1685 224 308 20 81 chr5 144309313 144309324 -8227935 - B4A SINE B4 -123 169 131 8 1685 370 206 0 40 chr5 144309324 144309400 -8227859 - PB1D10 SINE Alu -39 78 6 8 1685 224 308 20 81 chr5 144309400 144309412 -8227847 - B4A SINE B4 -123 130 77 8 1685 186 71 0 0 chr5 144309512 144309540 -8227719 + (CGGGG)n Simple_repeat Simple_repeat 2 29 0 8 1686 200 59 29 0 chr5 144310712 144310746 -8226513 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 8 1686 272 312 230 42 chr5 144311187 144311404 -8225855 - MER102a DNA MER1_type -35 295 38 8 1686 207 0 0 0 chr5 144311404 144311427 -8225832 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 8 1686 753 123 0 0 chr5 144311543 144311649 -8225610 + B2_Mm2 SINE B2 2 107 -88 8 1686 240 111 0 0 chr5 144311720 144311756 -8225503 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 8 1686 215 61 30 0 chr5 144311830 144311863 -8225396 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 8 1686 773 301 17 0 chr5 144311864 144311944 -8225315 + ID SINE ID 1 83 -141 8 1686 376 345 35 9 chr5 144311944 144312058 -8225201 + PB1D10 SINE Alu 1 117 0 8 1686 396 0 0 0 chr5 144312175 144312219 -8225040 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1686 291 122 0 0 chr5 144312284 144312333 -8224926 + (GGA)n Simple_repeat Simple_repeat 1 49 0 8 1686 584 184 155 31 chr5 144312333 144312462 -8224797 - B3A SINE B2 -53 145 1 8 1686 627 210 25 89 chr5 144313148 144313305 -8223954 - B1_Mur1 SINE Alu -1 148 2 8 1686 263 284 14 0 chr5 144313710 144313784 -8223475 - ID4_ SINE ID -7 76 2 8 1686 695 206 188 0 chr5 144313901 144314071 -8223188 + B3 SINE B2 3 204 -12 8 1686 216 0 0 0 chr5 144314103 144314127 -8223132 + (TTA)n Simple_repeat Simple_repeat 1 24 0 8 1686 5131 41 18 0 chr5 144314127 144314728 -8222531 - L1_Mus1 LINE L1 -9 6558 5947 8 1686 1126 176 48 14 chr5 144314735 144314943 -8222316 - B3 SINE B2 0 216 2 8 1686 330 241 13 0 chr5 144315319 144315398 -8221861 + B3 SINE B2 80 159 -57 8 1686 236 216 12 119 chr5 144315401 144315485 -8221774 + RLTR25B LTR ERVK 430 504 -524 8 1686 528 194 31 0 chr5 144315427 144315525 -8221734 + B1_Mur1 SINE Alu 49 149 0 8 1686 854 151 46 51 chr5 144315544 144315740 -8221519 - Lx5 LINE L1 0 7050 6856 8 1686 512 194 29 48 chr5 144315864 144315967 -8221292 + PB1D10 SINE Alu 3 103 -14 8 1686 744 112 198 8 chr5 144315991 144316117 -8221142 + B1_Mur4 SINE Alu 1 150 0 8 1686 658 133 164 16 chr5 144316410 144316532 -8220727 - B1_Mur3 SINE Alu -8 141 2 8 1686 463 238 68 68 chr5 144316631 144316793 -8220466 - RSINE1 SINE B4 0 165 4 8 1686 3509 23 0 29 chr5 144316910 144317318 -8219941 - MTA_Mm LTR MaLR 0 396 1 8 1686 479 307 44 0 chr5 144317383 144317520 -8219739 + ID_B1 SINE B4 81 223 -1 8 1686 297 320 104 33 chr5 144317637 144317918 -8219341 - L2a LINE L2 -232 3194 2891 8 1686 393 289 14 105 chr5 144317921 144318064 -8219195 - RSINE1 SINE B4 -33 132 3 8 1686 706 246 60 0 chr5 144318078 144318261 -8218998 - B3A SINE B2 -4 194 1 8 1686 353 231 97 53 chr5 144318286 144318400 -8218859 - PB1D7 SINE Alu -1 119 1 8 1686 189 74 0 0 chr5 144318823 144318850 -8218409 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 8 1686 245 306 13 40 chr5 144318857 144318932 -8218327 + ID4_ SINE ID 1 73 -10 8 1686 296 285 44 92 chr5 144318937 144319203 -8218056 + L1M4 LINE L1 5211 5476 -707 8 1686 225 305 0 0 chr5 144319280 144319339 -8217920 + L1M4 LINE L1 5577 5635 -545 8 1686 538 249 201 6 chr5 144319455 144319629 -8217630 + ID_B1 SINE B4 5 212 -12 9 1686 213 39 0 0 chr5 144319631 144319657 -8217602 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 9 1686 307 212 57 91 chr5 144319841 144319918 -8217341 - L1M4 LINE L1 -426 5758 5682 9 1686 1203 89 0 0 chr5 144319918 144320097 -8217162 + (TG)n Simple_repeat Simple_repeat 1 179 0 9 1686 412 250 132 83 chr5 144320127 144320332 -8216927 - B4A SINE B4 -75 217 3 9 1686 527 242 43 79 chr5 144320638 144320777 -8216482 - B1F2 SINE Alu -9 140 7 9 1686 692 233 24 33 chr5 144320789 144320996 -8216263 - B3 SINE B2 -6 187 1 9 1686 293 345 0 18 chr5 144321126 144321238 -8216021 - PB1D10 SINE Alu -7 110 1 9 1686 192 77 0 0 chr5 144321252 144321278 -8215981 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1686 495 228 81 66 chr5 144321358 144321494 -8215765 + B1_Mur1 SINE Alu 1 138 -11 9 1686 198 0 0 0 chr5 144321494 144321516 -8215743 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 9 1686 1302 40 109 6 chr5 144321560 144321734 -8215525 + B2_Mm1a SINE B2 2 193 0 9 1686 21 0 0 0 chr5 144321744 144321765 -8215494 + AT_rich Low_complexity Low_complexity 1 21 0 9 1686 517 259 15 22 chr5 144321837 144321971 -8215288 - ID_B1 SINE B4 -9 215 83 9 1686 646 244 64 0 chr5 144321992 144322148 -8215111 - B4 SINE B4 -13 279 114 9 1686 256 344 11 0 chr5 144322201 144322291 -8214968 - B3A SINE B2 -1 197 107 9 1686 554 135 76 9 chr5 144323362 144323467 -8213792 - ID_B1 SINE B4 -10 214 103 9 1686 239 312 44 35 chr5 144325468 144325581 -8211678 + RMER4A LTR ERVK 274 387 -79 9 1686 266 222 16 0 chr5 144325581 144325644 -8211615 + CT-rich Low_complexity Low_complexity 2 65 0 9 1686 293 270 44 11 chr5 144325733 144325823 -8211436 + B1_Mm SINE Alu 55 147 0 9 1686 484 256 211 42 chr5 144325826 144325928 -8211331 + B4 SINE B4 1 131 -161 9 1686 252 0 0 0 chr5 144325928 144325956 -8211303 + (TG)n Simple_repeat Simple_repeat 1 28 0 9 1686 484 256 211 42 chr5 144325956 144326090 -8211169 + B4 SINE B4 132 277 -15 9 1686 444 250 20 20 chr5 144326153 144326255 -8211004 + PB1D10 SINE Alu 16 117 0 9 1686 321 209 17 56 chr5 144326256 144326356 -8210903 + PB1D7 SINE Alu 1 93 -56 9 1686 219 219 49 0 chr5 144326475 144326516 -8210743 + PB1D10 SINE Alu 63 105 -12 9 1686 253 328 108 54 chr5 144326529 144326658 -8210601 - B1_Mur3 SINE Alu -13 136 1 9 1686 511 285 71 51 chr5 144326658 144326744 -8210515 - ID_B1 SINE B4 -134 90 1 9 1686 323 340 32 0 chr5 144327006 144327100 -8210159 + RSINE1 SINE B4 69 165 0 9 1686 1028 141 0 68 chr5 144327292 144327482 -8209777 - B2_Mm2 SINE B2 -18 177 1 9 1686 1216 41 7 0 chr5 144327678 144327824 -8209435 + B1_Mm SINE Alu 1 147 0 9 1686 537 219 57 0 chr5 144327856 144327961 -8209298 + B1_Mur1 SINE Alu 27 137 -12 9 1686 576 0 0 0 chr5 144327961 144328025 -8209234 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 9 1686 561 30 0 0 chr5 144328055 144328122 -8209137 + (TG)n Simple_repeat Simple_repeat 2 68 0 9 1686 353 299 85 30 chr5 144328321 144328380 -8208879 - ID_B1 SINE B4 -8 216 6 9 1686 657 227 35 0 chr5 144328380 144328521 -8208738 - B3 SINE B2 -65 151 6 9 1686 374 276 174 0 chr5 144328547 144328645 -8208614 - B1_Mus2 SINE Alu -32 115 1 9 1686 211 264 55 14 chr5 144328642 144328715 -8208544 + ID4_ SINE ID 4 79 -4 9 1686 185 197 16 0 chr5 144329097 144329158 -8208101 + (TA)n Simple_repeat Simple_repeat 2 63 0 9 1686 339 166 22 22 chr5 144329205 144329341 -8207918 + (TA)n Simple_repeat Simple_repeat 2 137 0 9 1686 526 279 49 42 chr5 144329365 144329507 -8207752 - B1F1 SINE Alu -6 143 1 9 1686 657 162 9 26 chr5 144329537 144329651 -8207608 + B1_Mur4 SINE Alu 1 112 -38 9 1686 272 227 73 29 chr5 144329778 144329846 -8207413 - ID4_ SINE ID -12 71 1 9 1686 633 258 42 21 chr5 144330042 144330232 -8207027 - B3A SINE B2 -4 194 1 9 1686 258 32 0 0 chr5 144330250 144330281 -8206978 + (CA)n Simple_repeat Simple_repeat 2 32 0 9 1686 881 175 25 6 chr5 144330396 144330572 -8206687 + B3 SINE B2 1 189 -4 9 1686 439 290 105 17 chr5 144330578 144330750 -8206509 - B3 SINE B2 -27 189 3 9 1686 369 0 0 0 chr5 144330750 144330791 -8206468 + (TG)n Simple_repeat Simple_repeat 1 41 0 9 1686 438 268 62 44 chr5 144330793 144330953 -8206306 - B3A SINE B2 -34 164 2 9 1686 601 261 20 27 chr5 144330974 144331128 -8206131 + RSINE1 SINE B4 5 158 -7 9 1686 187 218 52 52 chr5 144331323 144331381 -8205878 - MER5A DNA MER1_type -33 156 99 9 1686 560 161 71 19 chr5 144331685 144331814 -8205445 + B1_Mur4 SINE Alu 9 150 0 9 1686 858 97 89 0 chr5 144331831 144331955 -8205304 + B1_Mur4 SINE Alu 15 149 -1 9 1686 351 290 30 0 chr5 144331984 144332084 -8205175 - RSINE1 SINE B4 -61 104 2 9 1686 471 212 50 0 chr5 144332090 144332189 -8205070 - PB1D10 SINE Alu -5 112 9 9 1686 530 308 82 0 chr5 144332218 144332400 -8204859 - ID_B1 SINE B4 -16 208 12 9 1686 1063 172 11 16 chr5 144332662 144332845 -8204414 - B3A SINE B2 -16 182 1 9 1686 291 236 0 0 chr5 144332883 144332938 -8204321 - ZP3AR Satellite Satellite -130 82 28 9 1686 333 211 0 27 chr5 144333494 144333567 -8203692 - HAL1-3A_ME LINE L1 -812 2046 1976 9 1686 285 186 0 0 chr5 144333568 144333638 -8203621 + (TG)n Simple_repeat Simple_repeat 1 70 0 9 1686 388 0 0 21 chr5 144333640 144333688 -8203571 + (TA)n Simple_repeat Simple_repeat 1 47 0 9 1686 755 185 0 24 chr5 144333688 144333939 -8203320 + (TG)n Simple_repeat Simple_repeat 1 244 0 9 1686 755 100 9 0 chr5 144333990 144334100 -8203159 - B1_Mus1 SINE Alu 0 148 38 9 1686 987 217 55 9 chr5 144334105 144334324 -8202935 - B4A SINE B4 -63 229 1 9 1686 2169 164 114 26 chr5 144334410 144334867 -8202392 - MT2A LTR ERVL -5 528 32 9 1686 827 219 22 33 chr5 144334891 144335075 -8202184 - B3A SINE B2 -16 182 1 9 1686 402 248 93 28 chr5 144335101 144335209 -8202050 - ID_B1 SINE B4 -22 202 88 9 1686 345 238 34 44 chr5 144335274 144335375 -8201884 + PB1D10 SINE Alu 7 116 -11 9 1686 481 227 123 15 chr5 144335573 144335703 -8201556 + B1F1 SINE Alu 5 148 -1 9 1686 850 261 14 38 chr5 144336155 144336366 -8200893 - B3 SINE B2 -4 212 7 9 1686 834 233 14 55 chr5 144336385 144336603 -8200656 - B3 SINE B2 -6 210 2 9 1686 774 278 101 8 chr5 144336603 144336850 -8200409 - MTE2b LTR MaLR -5 374 105 9 1686 414 0 0 0 chr5 144336852 144336898 -8200361 + (CTA)n Simple_repeat Simple_repeat 2 47 0 9 1686 831 152 0 18 chr5 144336896 144337063 -8200196 + CT-rich Low_complexity Low_complexity 3 166 0 9 1686 772 138 82 30 chr5 144337071 144337205 -8200054 - B1_Mus1 SINE Alu -6 142 2 9 1686 390 269 0 0 chr5 144337205 144337288 -8199971 - MTE2b LTR MaLR -274 105 22 9 1686 256 236 18 0 chr5 144337311 144337366 -8199893 - ZP3AR Satellite Satellite -140 72 17 9 1686 781 173 8 0 chr5 144337409 144337536 -8199723 + B1_Mur3 SINE Alu 3 130 -19 9 1686 450 36 0 0 chr5 144337588 144337644 -8199615 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1686 291 226 109 77 chr5 144337653 144337756 -8199503 - B4 SINE B4 -11 281 191 9 1686 420 237 0 18 chr5 144337744 144337844 -8199415 + B1F SINE Alu 15 110 -10 9 1686 520 188 70 33 chr5 144337859 144338025 -8199234 + B3A SINE B2 1 182 -34 9 1686 425 133 13 0 chr5 144338025 144338100 -8199159 + (TCCC)n Simple_repeat Simple_repeat 2 77 0 9 1686 639 217 93 0 chr5 144338117 144338246 -8199013 - B1_Mur2 SINE Alu 0 149 9 9 1686 500 318 53 0 chr5 144338120 144338271 -8198988 - B4 SINE B4 -69 223 65 9 1686 768 277 48 0 chr5 144338433 144338621 -8198638 - ID_B1 SINE B4 -16 208 12 9 1686 642 219 31 0 chr5 144338850 144338978 -8198281 - RSINE1 SINE B4 -31 134 3 9 1686 482 272 48 30 chr5 144339103 144339290 -8197969 - MTE2a LTR MaLR -186 233 46 9 1686 498 174 0 117 chr5 144339279 144339390 -8197869 + PB1D9 SINE Alu 23 120 0 9 1686 230 182 91 0 chr5 144339404 144339448 -8197811 - MTE2a LTR MaLR -327 52 5 9 1686 258 291 103 11 chr5 144339858 144339945 -8197314 + B1F1 SINE Alu 3 97 -52 9 1686 2085 183 65 10 chr5 144339949 144340346 -8196913 - MTD LTR MaLR 0 419 1 9 1686 923 138 0 7 chr5 144340358 144340504 -8196755 + ZP3AR Satellite Satellite 47 191 -21 9 1686 271 336 38 9 chr5 144340460 144340565 -8196694 + ID_B1 SINE B4 1 108 -116 9 1686 308 245 86 45 chr5 144340888 144341021 -8196238 + L1MB3 LINE L1 5450 5587 -593 9 1686 536 248 50 12 chr5 144341021 144341158 -8196101 - B3A SINE B2 -55 138 1 9 1686 268 253 0 74 chr5 144341158 144341217 -8196042 + MLT1A1 LTR MaLR 301 356 -52 9 1686 1157 179 9 5 chr5 144341217 144341430 -8195829 - B3 SINE B2 -2 214 1 9 1686 268 253 0 74 chr5 144341430 144341446 -8195813 + MLT1A1 LTR MaLR 357 370 -38 9 1686 333 274 0 0 chr5 144341451 144341524 -8195735 + ID4 SINE ID 7 79 -4 9 1686 613 231 267 5 chr5 144341551 144341768 -8195491 + B4 SINE B4 1 274 -18 9 1686 492 32 0 0 chr5 144341788 144341850 -8195409 + (CA)n Simple_repeat Simple_repeat 2 63 0 9 1686 555 291 66 66 chr5 144341922 144342224 -8195035 + L1MB7 LINE L1 5818 6119 -65 9 1686 538 300 13 52 chr5 144342228 144342460 -8194799 - ID_B1 SINE B4 -1 223 1 9 1686 307 137 0 19 chr5 144342460 144342512 -8194747 - ZP3AR Satellite Satellite -117 95 45 9 1686 250 304 0 0 chr5 144342516 144342595 -8194664 - L1MA5 LINE L1 -1 6299 6221 9 1686 1023 125 0 0 chr5 144343172 144343316 -8193943 + B1_Mus1 SINE Alu 5 148 0 1 1686 385 283 72 7 chr5 144343344 144343483 -8193776 + B1F SINE Alu 2 149 0 1 1686 749 97 0 0 chr5 144343516 144343619 -8193640 + ZP3AR Satellite Satellite 46 148 -64 1 1686 251 191 16 16 chr5 144343619 144343683 -8193576 + ID4_ SINE ID 1 64 -19 1 1686 787 197 59 81 chr5 144344028 144344249 -8193010 - B3 SINE B2 0 216 1 1 1686 712 230 98 39 chr5 144344273 144344477 -8192782 - B3 SINE B2 0 216 1 1 1686 284 333 85 100 chr5 144344550 144344750 -8192509 - B4 SINE B4 -2 290 94 1 1686 188 86 29 0 chr5 144344752 144344787 -8192472 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 1 1686 323 224 26 70 chr5 144345306 144345421 -8191838 + L1MB3 LINE L1 6034 6143 -40 9 1686 426 326 0 0 chr5 144345423 144345521 -8191738 + ID_B1 SINE B4 84 181 -43 1 1686 843 218 113 5 chr5 144345525 144345719 -8191540 + B3 SINE B2 1 215 -1 1 1686 192 40 0 0 chr5 144345744 144345769 -8191490 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1686 241 197 111 14 chr5 144345770 144345842 -8191417 + MT2B LTR ERVL 162 240 -361 1 1686 330 227 227 0 chr5 144345778 144345853 -8191406 + B1_Mur2 SINE Alu 5 96 -53 1 1686 1003 124 0 0 chr5 144346256 144346401 -8190858 + B1_Mus2 SINE Alu 2 146 -1 1 1686 185 86 0 54 chr5 144346564 144346601 -8190658 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 1 1686 876 228 81 5 chr5 144346718 144346903 -8190356 + B3 SINE B2 18 216 0 1 1686 496 235 13 51 chr5 144346962 144347119 -8190140 + RSINE1 SINE B4 3 153 -12 1 1686 180 0 0 0 chr5 144347239 144347259 -8190000 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1686 698 246 14 0 chr5 144347755 144347893 -8189366 + B1_Mur1 SINE Alu 6 145 -4 1 1686 373 221 58 91 chr5 144347952 144348106 -8189153 - RSINE1 SINE B4 -14 151 3 1 1686 653 274 47 47 chr5 144348153 144348247 -8189012 - B3 SINE B2 -2 214 128 1 1686 3678 115 18 25 chr5 144348247 144348807 -8188452 - RLTR31B_Mm LTR ERVK -1 556 1 1 1686 653 274 47 47 chr5 144348807 144348926 -8188333 - B3 SINE B2 -89 127 1 1 1686 348 24 0 0 chr5 144348930 144348971 -8188288 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1 1686 664 155 138 0 chr5 144348971 144349087 -8188172 - B1_Mur3 SINE Alu -8 141 10 1 1686 367 219 14 0 chr5 144349079 144349152 -8188107 - ORR1D2 LTR MaLR -296 74 1 1 1686 287 340 0 19 chr5 144349153 144349261 -8187998 + CT-rich Low_complexity Low_complexity 6 111 0 1 1686 35 24 0 0 chr5 144349264 144349306 -8187953 + AT_rich Low_complexity Low_complexity 1 42 0 1 1686 375 167 0 0 chr5 144349306 144349372 -8187887 - B1_Mur3 SINE Alu 0 149 84 1 1686 588 235 109 14 chr5 144349575 144349713 -8187546 - RSINE1 SINE B4 -10 155 5 1 1686 244 260 68 0 chr5 144350144 144350217 -8187042 + L2 LINE L2 2834 2911 -508 1 1686 1264 232 21 32 chr5 144350368 144350649 -8186610 + B4A SINE B4 14 291 -1 1 1686 324 208 0 0 chr5 144350654 144350755 -8186504 + (CA)n Simple_repeat Simple_repeat 1 101 0 1 1686 835 166 254 0 chr5 144350808 144350977 -8186282 + B3 SINE B2 5 216 0 1 1686 873 100 49 28 chr5 144350988 144351132 -8186127 + B1_Mur3 SINE Alu 3 149 0 1 1686 443 240 29 9 chr5 144351153 144351258 -8186001 + PB1D7 SINE Alu 12 118 -2 1 1686 2436 131 13 10 chr5 144351311 144351704 -8185555 + ORR1B1 LTR MaLR 1 394 0 1 1686 242 115 67 22 chr5 144351780 144351869 -8185390 + (TATAA)n Simple_repeat Simple_repeat 5 97 0 1 1686 905 246 35 0 chr5 144351939 144352110 -8185149 - ID_B1 SINE B4 -26 198 22 1 1686 368 179 13 0 chr5 144352299 144352377 -8184882 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 1 1686 433 253 10 10 chr5 144352379 144352475 -8184784 + RSINE1 SINE B4 67 162 -3 1 1686 273 295 0 0 chr5 144352485 144352546 -8184713 - ID SINE ID -146 78 18 1 1686 5316 120 1 6 chr5 144352552 144353342 -8183917 - Lx8 LINE L1 -1551 5922 5137 1 1686 225 289 127 34 chr5 144353331 144353449 -8183810 - L1MB3 LINE L1 -82 6101 5973 1 1686 239 79 26 0 chr5 144353467 144353505 -8183754 + (TC)n Simple_repeat Simple_repeat 1 39 0 1 1686 361 261 0 54 chr5 144353531 144353624 -8183635 - ID_B1 SINE B4 -49 175 88 1 1686 599 251 54 50 chr5 144353688 144353948 -8183311 - L1MB7 LINE L1 -64 6120 5860 1 1686 857 182 181 6 chr5 144354300 144354482 -8182777 + ID_B1 SINE B4 6 219 -5 1 1686 214 315 14 14 chr5 144354760 144354834 -8182425 + ID SINE ID 1 74 -150 1 1686 728 236 7 28 chr5 144354868 144355012 -8182247 + RSINE1 SINE B4 3 143 -22 1 1686 351 0 0 0 chr5 144355184 144355223 -8182036 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1686 198 0 0 0 chr5 144355520 144355542 -8181717 + (TA)n Simple_repeat Simple_repeat 2 23 0 1 1686 466 262 235 5 chr5 144355542 144355724 -8181535 - ID_B1 SINE B4 0 224 1 1 1686 256 254 0 0 chr5 144355741 144355796 -8181463 - tRNA-Ala-GCA tRNA tRNA -16 59 5 1 1686 225 339 38 53 chr5 144355834 144355965 -8181294 + B4A SINE B4 106 234 -58 1 1686 381 22 0 0 chr5 144355993 144356039 -8181220 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1686 849 238 60 28 chr5 144356216 144356432 -8180827 - ID_B1 SINE B4 0 224 2 1 1686 496 214 54 0 chr5 144356452 144356564 -8180695 - PB1D9 SINE Alu -1 119 2 1 1686 2408 127 64 11 chr5 144356649 144357023 -8180236 + ORR1B1 LTR MaLR 1 394 0 1 1686 7110 163 71 13 chr5 144357025 144358449 -8178810 + ORR1B1-int LTR MaLR 3 1509 0 1 1686 2219 138 80 6 chr5 144358449 144358814 -8178445 + ORR1B1 LTR MaLR 1 392 -2 1 1686 584 305 10 41 chr5 144358867 144359062 -8178197 - B4A SINE B4 -2 290 102 1 1686 1120 251 39 55 chr5 144359064 144359462 -8177797 - MTE2a LTR MaLR -12 407 3 1 1686 1221 48 0 0 chr5 144360136 144360283 -8176976 - B1_Mm SINE Alu 0 147 1 1 1686 1065 165 87 5 chr5 144360334 144360529 -8176730 - B3 SINE B2 -3 213 3 1 1686 402 21 0 0 chr5 144360569 144360616 -8176643 + (TG)n Simple_repeat Simple_repeat 1 47 0 1 1686 763 234 0 0 chr5 144360616 144360753 -8176506 - RSINE1 SINE B4 -26 139 3 1 1686 698 236 146 20 chr5 144360843 144361090 -8176169 - B4A SINE B4 -12 280 3 1 1686 990 211 27 63 chr5 144361129 144361352 -8175907 - B3 SINE B2 0 216 2 1 1686 259 286 0 0 chr5 144361454 144361517 -8175742 - PB1D9 SINE Alu 0 120 58 1 1686 334 146 52 0 chr5 144361577 144361673 -8175586 + (TG)n Simple_repeat Simple_repeat 1 101 0 1 1686 562 221 24 24 chr5 144361673 144361798 -8175461 - RSINE1 SINE B4 0 165 41 1 1686 567 0 0 0 chr5 144361868 144361931 -8175328 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1 1686 896 133 35 14 chr5 144361931 144362066 -8175193 - B1_Mus1 SINE Alu -8 140 1 1 1686 588 267 19 45 chr5 144362094 144362234 -8175025 + RSINE1 SINE B4 3 137 -28 1 1686 354 23 0 0 chr5 144362234 144362277 -8174982 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1686 588 267 19 45 chr5 144362277 144362293 -8174966 + RSINE1 SINE B4 138 154 -11 1 1686 265 275 12 12 chr5 144362415 144362496 -8174763 - L1M4b LINE L1 -452 6532 6452 1 1686 186 43 0 0 chr5 144362509 144362532 -8174727 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1686 218 333 99 83 chr5 144362532 144362587 -8174672 - RSINE1 SINE B4 -5 160 108 1 1686 180 0 0 0 chr5 144362587 144362607 -8174652 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1686 836 196 0 0 chr5 144362607 144362745 -8174514 - B1_Mus1 SINE Alu -10 138 1 1 1686 218 333 99 83 chr5 144362745 144362809 -8174450 - RSINE1 SINE B4 -58 107 39 1 1686 450 193 146 9 chr5 144362854 144362964 -8174295 + ID_B1 SINE B4 82 206 -18 1 1686 314 297 87 41 chr5 144363222 144363357 -8173902 - L1M4b LINE L1 -5394 1940 1793 1 1686 547 282 48 32 chr5 144363357 144363544 -8173715 - B3A SINE B2 -8 190 1 1 1686 314 297 87 41 chr5 144363544 144363580 -8173679 - L1M4b LINE L1 -5542 1792 1762 1 1686 575 14 0 14 chr5 144363585 144363658 -8173601 + (TG)n Simple_repeat Simple_repeat 1 72 0 1 1686 588 280 178 8 chr5 144363676 144363932 -8173327 - B4A SINE B4 -5 287 1 1 1686 747 87 0 0 chr5 144364188 144364292 -8172967 + (TTCC)n Simple_repeat Simple_repeat 4 107 0 1 1686 987 78 0 0 chr5 144364292 144364421 -8172838 - B1_Mur3 SINE Alu -12 137 9 1 1686 387 216 14 0 chr5 144364502 144364576 -8172683 - ID4_ SINE ID -8 75 1 1 1686 1596 45 14 0 chr5 144364576 144365204 -8172055 - ZP3AR Satellite Satellite -11 636 1 1 1686 459 266 18 18 chr5 144365722 144365833 -8171426 - ID_B1 SINE B4 -33 191 81 1 1686 207 256 0 0 chr5 144365834 144365873 -8171386 + polypyrimidine Low_complexity Low_complexity 4 42 0 1 1686 317 109 22 0 chr5 144365875 144365921 -8171338 - ID_B1 SINE B4 -15 209 163 1 1686 286 106 0 21 chr5 144366075 144366123 -8171136 + ZP3AR Satellite Satellite 49 95 -117 1 1686 276 260 53 27 chr5 144366123 144366198 -8171061 + ID4_ SINE ID 1 77 -6 1 1686 605 271 139 0 chr5 144366499 144366665 -8170594 - B3A SINE B2 -8 190 2 1 1686 492 128 0 0 chr5 144366747 144366825 -8170434 + (CGTG)n Simple_repeat Simple_repeat 1 78 0 1 1686 234 293 71 24 chr5 144366833 144366917 -8170342 - B4 SINE B4 -200 92 5 1 1686 521 207 107 8 chr5 144366950 144367072 -8170187 - B1F2 SINE Alu -3 146 13 1 1686 230 322 15 119 chr5 144366952 144367086 -8170173 - B4A SINE B4 -88 204 85 1 1686 891 140 0 27 chr5 144367264 144367411 -8169848 + B1_Mus2 SINE Alu 5 147 0 1 1686 423 200 0 0 chr5 144367424 144367504 -8169755 + MTD LTR MaLR 119 198 -221 1 1686 599 225 42 0 chr5 144367517 144367637 -8169622 + MTD LTR MaLR 251 375 -44 1 1686 242 100 80 0 chr5 144367658 144367708 -8169551 - Lx4B LINE L1 -4 7054 7001 1 1686 297 0 0 0 chr5 144367887 144367920 -8169339 + (T)n Simple_repeat Simple_repeat 1 33 0 1 1686 345 316 112 41 chr5 144368237 144368508 -8168751 - RSINE1 SINE B4 -1 291 1 1 1686 468 297 90 45 chr5 144368516 144368717 -8168542 - ID_B1 SINE B4 -7 217 8 1 1686 207 0 0 0 chr5 144368740 144368763 -8168496 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1686 1243 54 0 0 chr5 144368773 144368920 -8168339 - B1_Mm SINE Alu 0 147 1 1 1686 390 308 83 23 chr5 144368933 144369066 -8168193 - B1F1 SINE Alu -8 141 1 1 1686 736 245 68 28 chr5 144369088 144369336 -8167923 - L1MB5 LINE L1 -105 6069 5812 1 1686 666 307 38 41 chr5 144369366 144369658 -8167601 - B4A SINE B4 -1 291 1 1 1686 430 321 31 31 chr5 144369858 144370019 -8167240 + ID_B1 SINE B4 58 218 -6 1 1686 307 132 29 0 chr5 144370074 144370142 -8167117 + (TGG)n Simple_repeat Simple_repeat 3 72 0 1 1686 501 147 227 25 chr5 144370144 144370263 -8166996 + B1_Mur4 SINE Alu 7 149 -1 1 1686 476 196 50 75 chr5 144370287 144370421 -8166838 + B4 SINE B4 105 238 -54 1 1686 487 74 12 12 chr5 144370441 144370523 -8166736 + (CA)n Simple_repeat Simple_repeat 1 82 0 1 1686 333 301 50 65 chr5 144371030 144371229 -8166030 - RMER15 LTR ERVL -80 495 300 1 1686 458 233 75 192 chr5 144371266 144371363 -8165896 - B4 SINE B4 0 292 178 1 1686 607 189 108 23 chr5 144371363 144371424 -8165835 - B1_Mus2 SINE Alu -1 146 79 1 1686 1089 139 113 52 chr5 144371424 144371637 -8165622 + URR1A DNA MER1_type 1 226 0 1 1686 607 189 108 23 chr5 144371637 144371705 -8165554 - B1_Mus2 SINE Alu -69 78 6 1 1686 458 233 75 192 chr5 144371705 144371717 -8165542 - B4 SINE B4 -115 177 84 1 1686 702 203 0 14 chr5 144371741 144372105 -8165154 + (TG)n Simple_repeat Simple_repeat 1 358 0 1 1686 861 189 7 20 chr5 144372281 144372432 -8164827 + B1_Mur3 SINE Alu 1 149 0 1 1686 254 250 0 0 chr5 144372434 144372493 -8164766 + A-rich Low_complexity Low_complexity 1 59 0 1 1686 432 269 56 14 chr5 144372493 144372636 -8164623 + B1F SINE Alu 1 149 0 1 1686 862 98 93 24 chr5 144372644 144372831 -8164428 + ZP3AR Satellite Satellite 1 199 -1 1 1686 251 190 35 0 chr5 144372800 144372858 -8164401 + ID4_ SINE ID 16 75 -8 1 1686 291 235 194 0 chr5 144373243 144373341 -8163918 + PB1D10 SINE Alu 1 117 0 1 1686 1064 120 0 0 chr5 144373393 144373543 -8163716 + B1_Mur4 SINE Alu 1 150 0 1 1686 258 206 0 0 chr5 144373562 144373625 -8163634 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1686 253 263 35 124 chr5 144373756 144373869 -8163390 + B3 SINE B2 113 215 -1 1 1686 366 188 26 64 chr5 144373903 144374020 -8163239 + B1_Mur3 SINE Alu 1 148 -1 1 1686 230 164 54 18 chr5 144374071 144374127 -8163132 + GA-rich Low_complexity Low_complexity 4 61 0 1 1686 487 198 10 0 chr5 144374588 144374684 -8162575 + PB1D10 SINE Alu 1 97 -20 1 1686 441 234 9 9 chr5 144374706 144374818 -8162441 + PB1D9 SINE Alu 1 112 -8 1 1686 422 224 23 34 chr5 144374904 144374992 -8162267 + ID_B1 SINE B4 123 209 -15 1 1686 198 0 0 0 chr5 144374992 144375014 -8162245 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 1 1686 236 342 51 0 chr5 144375350 144375429 -8161830 - L1MDa LINE L1 -5916 717 635 1 1686 337 267 181 83 chr5 144375512 144375657 -8161602 - L1MDa LINE L1 -6168 465 294 1 1686 270 0 0 0 chr5 144375657 144375687 -8161572 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1 1686 337 267 181 83 chr5 144375687 144375950 -8161309 - L1MDa LINE L1 -6340 293 17 1 1686 426 234 27 27 chr5 144375957 144376067 -8161192 - BC1_Mm scRNA scRNA -42 110 1 1 1686 1553 41 3 2 chr5 144376025 144376260 -8160999 - ZP3AR Satellite Satellite -21 235 1 1 1686 528 262 14 58 chr5 144376270 144376447 -8160812 - ID_B1 SINE B4 -65 227 63 1 1686 434 314 14 69 chr5 144376615 144376638 -8160621 - B3A SINE B2 -36 162 148 1 1686 237 65 0 0 chr5 144376638 144376669 -8160590 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1686 539 277 0 8 chr5 144376669 144376789 -8160470 - B3 SINE B2 -71 145 27 1 1686 391 230 27 0 chr5 144376796 144376870 -8160389 - PB1D10 SINE Alu -40 77 2 1 1686 249 276 13 26 chr5 144376804 144376882 -8160377 + YREP_Mm Unknown Unknown 250 326 -1486 1 1686 339 277 74 11 chr5 144376882 144376977 -8160282 - MIR SINE MIR -85 177 77 1 1686 320 235 81 23 chr5 144377689 144377776 -8159483 - RMER15 LTR ERVL -160 415 324 1 1686 374 261 32 73 chr5 144377965 144378089 -8159170 + B4A SINE B4 2 120 -172 1 1686 190 135 58 0 chr5 144378153 144378205 -8159054 + A-rich Low_complexity Low_complexity 2 56 0 1 1686 201 176 0 0 chr5 144378408 144378442 -8158817 + A-rich Low_complexity Low_complexity 1 34 0 1 1686 276 251 106 16 chr5 144378996 144379101 -8158158 + PB1D10 SINE Alu 3 114 -34 1 1686 300 335 116 40 chr5 144379101 144379300 -8157959 + HAL1-3A_ME LINE L1 2142 2355 -503 1 1686 229 356 0 0 chr5 144379831 144379904 -8157355 + L2c LINE L2 3273 3345 -42 1 1686 432 292 17 106 chr5 144379927 144380107 -8157152 + RSINE1 SINE B4 2 165 0 1 1686 396 59 0 0 chr5 144380217 144380268 -8156991 + (TCCCC)n Simple_repeat Simple_repeat 5 55 0 1 1686 376 263 80 10 chr5 144380348 144380448 -8156811 + RSINE1 SINE B4 46 152 -13 1 1686 884 166 7 0 chr5 144380731 144380876 -8156383 - B1_Mus1 SINE Alu -1 147 2 1 1686 31 0 0 0 chr5 144381103 144381134 -8156125 + AT_rich Low_complexity Low_complexity 1 31 0 1 1686 784 245 0 12 chr5 144381150 144381315 -8155944 - RSINE1 SINE B4 0 165 3 1 1686 198 0 0 0 chr5 144381404 144381426 -8155833 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1686 381 271 139 0 chr5 144382352 144382474 -8154785 - B1_Mur1 SINE Alu -10 139 1 1 1686 775 200 0 14 chr5 144382515 144382657 -8154602 + B1_Mus2 SINE Alu 1 140 -7 1 1686 438 231 33 0 chr5 144382669 144382760 -8154499 - B3 SINE B2 -5 211 118 1 1686 609 232 118 14 chr5 144382766 144382910 -8154349 - B3A SINE B2 -34 164 6 1 1686 238 287 106 44 chr5 144382922 144383035 -8154224 - RSINE1 SINE B4 -2 163 44 1 1686 293 269 0 15 chr5 144384202 144384270 -8152989 + ID4 SINE ID 14 80 -3 1 1686 340 277 109 0 chr5 144385484 144385585 -8151674 + RSINE1 SINE B4 50 161 -4 1 1686 195 42 0 0 chr5 144386120 144386144 -8151115 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1686 552 283 100 35 chr5 144386903 144387371 -8149888 + LTR33A_ LTR ERVL 1 523 -8 1 1686 321 332 63 26 chr5 144387378 144387567 -8149692 + L1MC LINE L1 5570 5765 -2117 1 1686 491 277 42 21 chr5 144387953 144388097 -8149162 + B1F SINE Alu 2 148 -1 1 1686 715 218 13 20 chr5 144388116 144388266 -8148993 + B1_Mur1 SINE Alu 1 149 0 1 1686 226 357 119 28 chr5 144388933 144389124 -8148135 - MIR SINE MIR -27 235 21 1 1686 680 142 164 8 chr5 144389136 144389264 -8147995 - B1_Mur3 SINE Alu -1 148 1 1 1686 1220 61 0 0 chr5 144389306 144389453 -8147806 - B1_Mus2 SINE Alu 0 147 1 1 1686 339 224 47 0 chr5 144389674 144389759 -8147500 + B1_Mur4 SINE Alu 43 131 -19 1 1686 555 220 16 25 chr5 144390177 144390298 -8146961 - PB1D9 SINE Alu 0 120 1 1 1686 228 86 0 0 chr5 144390332 144390367 -8146892 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 1 1686 659 228 0 8 chr5 144390385 144390509 -8146750 - B3A SINE B2 -47 151 29 1 1686 518 209 91 0 chr5 144390861 144390971 -8146288 + PB1D9 SINE Alu 1 120 0 1 1686 542 257 157 135 chr5 144391117 144391211 -8146048 - B4A SINE B4 -4 288 224 1 1686 819 236 108 0 chr5 144391211 144391406 -8145853 - B3 SINE B2 0 216 1 1 1686 542 257 157 135 chr5 144391406 144391585 -8145674 - B4A SINE B4 -69 223 9 1 1686 657 259 16 44 chr5 144392100 144392282 -8144977 - B2_Mm2 SINE B2 -18 177 1 1 1686 420 244 14 58 chr5 144393116 144393255 -8144004 - B1_Mur2 SINE Alu -7 142 10 1 1686 573 267 22 7 chr5 144393196 144393332 -8143927 - B3A SINE B2 -59 139 2 1 1686 232 27 54 0 chr5 144394170 144394207 -8143052 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1 1686 213 39 0 0 chr5 144397519 144397545 -8139714 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1686 360 241 168 25 chr5 144397677 144397796 -8139463 + B1F SINE Alu 4 139 -10 1 1686 1032 205 15 0 chr5 144397915 144398120 -8139139 - B3 SINE B2 -6 210 3 1 1686 483 33 0 0 chr5 144398446 144398507 -8138752 + (GA)n Simple_repeat Simple_repeat 1 61 0 1 1686 307 208 26 65 chr5 144400329 144400406 -8136853 - ID4_ SINE ID -8 75 2 1 1686 664 254 13 103 chr5 144400438 144400671 -8136588 + ID_B1 SINE B4 2 213 -11 1 1686 429 313 191 20 chr5 144401083 144401277 -8135982 + B4A SINE B4 2 229 -63 1 1686 511 263 92 68 chr5 144401277 144401555 -8135704 + B4 SINE B4 1 278 -14 1 1686 496 224 182 0 chr5 144401952 144402117 -8135142 + L1MA9 LINE L1 6048 6242 -70 1 1686 323 276 91 11 chr5 144402121 144402223 -8135036 - B1_Mur3 SINE Alu -7 113 5 1 1686 316 240 92 20 chr5 144402373 144402471 -8134788 - PB1D10 SINE Alu -6 111 7 1 1686 258 303 13 0 chr5 144402997 144403073 -8134186 + HAL1 LINE L1 811 887 -1620 1 1686 985 33 0 0 chr5 144404016 144404136 -8133123 + B1_Mus2 SINE Alu 28 147 0 1 1686 333 268 236 6 chr5 144404163 144404328 -8132931 + B3 SINE B2 1 203 -13 1 1686 342 305 199 20 chr5 144404536 144404721 -8132538 + L1M6 LINE L1 1363 1588 -4908 1 1686 324 0 0 0 chr5 144404721 144404757 -8132502 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1686 342 305 199 20 chr5 144404757 144404922 -8132337 + L1M6 LINE L1 1589 1775 -4721 1 1686 427 275 218 9 chr5 144404928 144405171 -8132088 + B4A SINE B4 2 288 -4 1 1686 529 267 133 52 chr5 144405914 144406147 -8131112 - B4A SINE B4 -39 253 2 1 1686 568 167 65 32 chr5 144406454 144406578 -8130681 + B1_Mur1 SINE Alu 21 148 -1 1 1686 340 305 119 41 chr5 144406593 144406836 -8130423 - Arthur1 DNA Tip100 -108 3839 3578 1 1686 795 255 93 0 chr5 144406884 144407088 -8130171 - MTEa LTR MaLR -1 378 156 1 1686 367 286 51 0 chr5 144407477 144407575 -8129684 + Tigger7 DNA MER2_type 14 116 -2375 1 1686 220 0 0 79 chr5 144407618 144407656 -8129603 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 1 1686 1266 41 0 7 chr5 144407656 144407805 -8129454 - B1_Mus1 SINE Alu 0 148 1 1 1686 1364 269 62 17 chr5 144407836 144408276 -8128983 - BGLII_B LTR ERVK -10 431 10 1 1686 549 0 0 0 chr5 144408301 144408362 -8128897 + (TA)n Simple_repeat Simple_repeat 1 61 0 1 1686 225 274 93 19 chr5 144408890 144408998 -8128261 - L1MC1 LINE L1 -184 6149 6034 1 1686 542 263 233 34 chr5 144409854 144410090 -8127169 - B4A SINE B4 -8 284 2 1 1686 800 236 34 29 chr5 144410426 144410631 -8126628 - B3 SINE B2 -6 210 5 1 1686 295 260 93 77 chr5 144410651 144410672 -8126587 - B2_Mm1t SINE B2 -3 190 168 1 1686 1003 235 5 5 chr5 144410672 144410886 -8126373 - B3 SINE B2 0 216 3 1 1686 634 240 43 18 chr5 144410886 144411047 -8126212 - B3A SINE B2 -26 167 5 1 1686 886 320 5 5 chr5 144411053 144411273 -8125986 - B4A SINE B4 -72 220 1 1 1686 445 253 21 0 chr5 144411618 144411713 -8125546 - PB1 SINE Alu -30 97 1 1 1686 992 208 49 5 chr5 144411766 144411940 -8125319 + B3 SINE B2 4 186 -30 1 1686 261 0 0 0 chr5 144411940 144411969 -8125290 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1686 1012 213 111 21 chr5 144411982 144412270 -8124989 + MLT1A0 LTR MaLR 45 358 -7 1 1686 303 415 0 0 chr5 144412822 144412957 -8124302 - MLT1N2 LTR MaLR 0 562 428 1 1686 448 287 16 24 chr5 144413539 144413664 -8123595 - B4 SINE B4 -69 223 100 1 1686 219 114 0 0 chr5 144413679 144413714 -8123545 + (CCCCCG)n Simple_repeat Simple_repeat 2 36 0 1 1686 608 238 8 0 chr5 144414204 144414326 -8122933 - B3 SINE B2 -19 197 75 1 1686 413 246 55 0 chr5 144414450 144414560 -8122699 - PB1D10 SINE Alu -1 116 1 1 1686 702 0 0 0 chr5 144414808 144414886 -8122373 + (TTTCC)n Simple_repeat Simple_repeat 3 80 0 1 1686 1222 28 7 0 chr5 144414890 144415032 -8122227 - B1_Mus1 SINE Alu -5 143 1 1 1686 244 200 55 0 chr5 144415075 144415130 -8122129 - RMER15 LTR ERVL -96 479 422 1 1686 248 248 82 82 chr5 144415216 144415326 -8121933 - RMER15 LTR ERVL -417 158 49 1 1686 234 358 68 29 chr5 144415700 144415907 -8121352 + AmnSINE1 SINE SINE 327 541 -34 1 1686 258 125 0 0 chr5 144416250 144416298 -8120961 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1686 524 242 36 43 chr5 144416856 144416994 -8120265 - B1_Mur1 SINE Alu -11 138 2 1 1686 295 325 34 17 chr5 144417198 144417317 -8119942 - B4A SINE B4 -171 121 1 1 1686 793 223 45 6 chr5 144418198 144418381 -8118878 + B3 SINE B2 1 197 -1 1 1686 244 170 35 70 chr5 144418383 144418440 -8118819 + RSINE1 SINE B4 2 56 -109 1 1686 543 92 0 0 chr5 144418953 144419040 -8118219 + (TG)n Simple_repeat Simple_repeat 1 87 0 1 1686 223 316 92 0 chr5 144419060 144419136 -8118123 - PB1 SINE Alu -30 97 15 1 1686 324 0 0 0 chr5 144419181 144419217 -8118042 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1686 295 296 0 0 chr5 144419225 144419296 -8117963 - B3A SINE B2 -29 169 99 1 1686 408 268 17 26 chr5 144419312 144419427 -8117832 - B3A SINE B2 -84 114 1 1 1686 1049 233 107 23 chr5 144419427 144419818 -8117441 - L1MDa LINE L1 -391 6174 5751 1 1686 878 217 44 0 chr5 144419831 144420034 -8117225 - B3 SINE B2 0 216 5 1 1686 278 297 77 0 chr5 144420068 144420159 -8117100 - PB1D10 SINE Alu -19 98 1 1 1686 298 295 9 9 chr5 144420251 144420357 -8116902 - L1MDa LINE L1 -1146 5391 5286 1 1686 3970 210 108 108 chr5 144420361 144420854 -8116405 - Lx6 LINE L1 -1 7459 6929 1 1686 314 226 54 97 chr5 144420854 144420947 -8116312 - RSINE1 SINE B4 -65 100 12 1 1686 3970 210 108 108 chr5 144420947 144421635 -8115624 - Lx6 LINE L1 -1 6928 6185 1 1686 288 0 0 0 chr5 144421639 144421671 -8115588 + (CA)n Simple_repeat Simple_repeat 2 33 0 1 1686 1024 105 21 0 chr5 144421695 144421838 -8115421 - B1_Mm SINE Alu 0 147 2 1 1686 7123 76 76 6 chr5 144422323 144423383 -8113876 - L1_Mus3 LINE L1 -5 6633 5497 1 1686 613 185 114 8 chr5 144423461 144423592 -8113667 + B1_Mur4 SINE Alu 5 149 -1 1 1686 372 94 0 0 chr5 144423673 144423726 -8113533 + (TG)n Simple_repeat Simple_repeat 1 53 0 1 1686 577 254 60 30 chr5 144423740 144423874 -8113385 - RSINE1 SINE B4 -24 141 4 1 1686 489 107 68 13 chr5 144423969 144424073 -8113186 - B1_Mur4 SINE Alu -29 118 8 1 1686 939 245 109 32 chr5 144424163 144424568 -8112691 - L1MDa LINE L1 -4601 2032 1597 1 1686 516 284 42 92 chr5 144424842 144425082 -8112177 + B4 SINE B4 65 292 0 1 1686 363 73 0 0 chr5 144425411 144425466 -8111793 + (GTTTG)n Simple_repeat Simple_repeat 5 59 0 1 1686 1129 58 0 21 chr5 144425468 144425610 -8111649 - B1_Mus2 SINE Alu -8 139 1 1 1686 304 142 41 46 chr5 144425680 144425748 -8111511 - B1F1 SINE Alu -8 141 48 1 1686 410 244 91 66 chr5 144425748 144425801 -8111458 - L1ME2z LINE L1 -19 6425 6371 1 1686 791 264 24 19 chr5 144425801 144426006 -8111253 + ID_B1 SINE B4 2 207 -17 1 1686 410 244 91 66 chr5 144426006 144426149 -8111110 - L1ME2z LINE L1 -74 6370 6224 1 1686 770 219 59 43 chr5 144426941 144427127 -8110132 - B3A SINE B2 -9 189 1 1 1686 279 325 61 0 chr5 144427445 144427559 -8109700 + L1M4 LINE L1 5511 5631 -540 1 1686 927 218 19 23 chr5 144427581 144427797 -8109462 + B3 SINE B2 2 216 0 1 1686 323 202 9 0 chr5 144427797 144427877 -8109382 + L1M4 LINE L1 5745 5828 -1957 1 1686 276 259 12 58 chr5 144427894 144427980 -8109279 + B1_Mm SINE Alu 15 96 -51 1 1686 231 224 71 43 chr5 144427996 144428066 -8109193 + L1M4 LINE L1 5816 5887 -284 1 1686 513 151 25 0 chr5 144428228 144428347 -8108912 + (TCTA)n Simple_repeat Simple_repeat 3 124 0 1 1686 470 252 78 90 chr5 144428356 144428522 -8108737 - RSINE1 SINE B4 0 165 2 1 1686 366 228 145 83 chr5 144428549 144428711 -8108548 + B3A SINE B2 1 186 -9 1 1686 264 229 0 67 chr5 144428720 144428795 -8108464 + ID4_ SINE ID 1 70 -13 1 1686 399 270 43 17 chr5 144428849 144428966 -8108293 - PB1D9 SINE Alu 0 120 1 1 1686 261 206 0 81 chr5 144428966 144429030 -8108229 + RLTR25A LTR ERVK 515 572 -531 1 1686 601 118 21 21 chr5 144428982 144429077 -8108182 + B1_Mur4 SINE Alu 54 148 -2 1 1686 226 258 31 98 chr5 144429104 144429231 -8108028 - MIRb SINE MIR -128 134 10 1 1686 656 292 13 13 chr5 144429525 144429560 -8107699 - L1MC LINE L1 -1969 5816 5782 1 1686 1170 22 0 0 chr5 144429560 144429697 -8107562 + (TCTCC)n Simple_repeat Simple_repeat 2 138 0 1 1686 1147 62 7 7 chr5 144429699 144429844 -8107415 - B1_Mm SINE Alu -1 146 2 1 1686 656 292 13 13 chr5 144429844 144430044 -8107215 - L1MC LINE L1 -2004 5781 5581 1 1686 312 324 36 0 chr5 144430312 144430423 -8106836 - MIR SINE MIR -122 140 26 1 1686 452 286 134 21 chr5 144430423 144430662 -8106597 - B4A SINE B4 -25 267 2 1 1686 210 37 0 0 chr5 144431363 144431390 -8105869 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1686 962 249 13 13 chr5 144431432 144431664 -8105595 - B4A SINE B4 -60 232 1 1 1686 254 260 65 0 chr5 144431734 144431811 -8105448 + ORR1D1 LTR MaLR 44 125 -234 1 1686 260 309 65 9 chr5 144431957 144432065 -8105194 + ORR1D1 LTR MaLR 257 370 -4 1 1686 273 297 39 45 chr5 144432123 144432278 -8104981 - L1ME3 LINE L1 -76 6086 5933 1 1686 715 203 95 0 chr5 144432317 144432465 -8104794 + B3 SINE B2 2 163 -53 1 1686 243 0 0 0 chr5 144432500 144432527 -8104732 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 1 1686 242 343 79 17 chr5 144432551 144432729 -8104530 - L1M4 LINE L1 -450 5734 5546 1 1686 415 242 159 5 chr5 144433250 144433433 -8103826 - L1MA5 LINE L1 -241 6059 5854 1 1686 256 271 24 0 chr5 144433438 144433523 -8103736 - L1M5 LINE L1 -3280 2866 2780 1 1686 24 0 0 0 chr5 144434012 144434036 -8103223 + AT_rich Low_complexity Low_complexity 1 24 0 1 1686 1170 68 0 0 chr5 144434038 144434185 -8103074 + B1_Mus2 SINE Alu 1 147 0 1 1686 481 321 30 8 chr5 144434226 144434358 -8102901 - RSINE1 SINE B4 -13 152 18 1 1686 338 243 14 0 chr5 144434368 144434442 -8102817 - L1MA7 LINE L1 -44 6247 6173 1 1686 231 218 0 0 chr5 144434650 144434705 -8102554 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1686 684 309 17 21 chr5 144434835 144435073 -8102186 - B4A SINE B4 -55 237 1 1 1686 243 114 0 0 chr5 144435115 144435159 -8102100 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1686 423 267 88 14 chr5 144435162 144435310 -8101949 - B3 SINE B2 -48 168 10 1 1686 2038 156 173 0 chr5 144435316 144435739 -8101520 - RMER1B Other Other 0 1066 571 1 1686 241 349 0 0 chr5 144435740 144435806 -8101453 - B4A SINE B4 -209 83 18 1 1686 508 284 82 87 chr5 144436055 144436410 -8100849 - MLT1H LTR MaLR -123 426 74 1 1686 351 173 0 0 chr5 144436603 144436684 -8100575 + (TA)n Simple_repeat Simple_repeat 2 82 0 1 1686 523 318 7 7 chr5 144438357 144438506 -8098753 - B4A SINE B4 -141 151 3 1 1686 726 188 189 29 chr5 144438541 144438716 -8098543 - B3 SINE B2 -12 204 2 1 1686 367 222 91 0 chr5 144438821 144438920 -8098339 - PB1D7 SINE Alu 0 120 13 1 1686 254 246 103 26 chr5 144439149 144439266 -8097993 - L1MEf LINE L1 -4653 1762 1635 1 1686 274 167 42 0 chr5 144440347 144440395 -8096864 + PB1 SINE Alu 75 124 -3 1 1686 202 204 36 36 chr5 144440544 144440600 -8096659 + GA-rich Low_complexity Low_complexity 3 58 0 1 1687 195 129 0 0 chr5 144441838 144441869 -8095390 + (TTTTC)n Simple_repeat Simple_repeat 4 34 0 1 1687 539 218 97 0 chr5 144441883 144442007 -8095252 - B1_Mur2 SINE Alu -12 137 2 1 1687 260 302 26 0 chr5 144442078 144442194 -8095065 - L1MC4 LINE L1 -142 7900 7782 1 1687 22 0 0 0 chr5 144442203 144442225 -8095034 + AT_rich Low_complexity Low_complexity 1 22 0 1 1687 255 31 0 0 chr5 144442245 144442277 -8094982 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1687 362 269 58 0 chr5 144442295 144442399 -8094860 - RSINE1 SINE B4 -54 111 2 1 1687 324 0 0 0 chr5 144442973 144443009 -8094250 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1687 297 75 0 0 chr5 144443242 144443282 -8093977 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 1 1687 613 229 8 0 chr5 144443323 144443441 -8093818 - B3A SINE B2 -79 119 1 1 1687 250 247 147 0 chr5 144443468 144443544 -8093715 + MIRc SINE MIR 97 186 -82 1 1687 803 172 231 0 chr5 144443823 144443992 -8093267 - B3 SINE B2 -6 210 3 1 1687 899 238 108 108 chr5 144443998 144444370 -8092889 + MTE2a LTR MaLR 6 377 -2 1 1687 1312 20 0 0 chr5 144446411 144446558 -8090701 + B1_Mus2 SINE Alu 1 147 0 1 1687 626 216 56 56 chr5 144446593 144446789 -8090470 - B3A SINE B2 -1 197 2 1 1687 314 301 19 0 chr5 144447055 144447158 -8090101 + (CGTG)n Simple_repeat Simple_repeat 2 106 0 1 1687 412 267 16 65 chr5 144448312 144448452 -8088807 + ID_B1 SINE B4 71 199 -25 1 1687 327 307 62 51 chr5 144448475 144448817 -8088442 - MLT1A LTR MaLR -25 365 3 1 1687 339 347 75 35 chr5 144449104 144449304 -8087955 + HAL1 LINE L1 1539 1746 -761 1 1687 241 135 211 0 chr5 144449310 144449362 -8087897 + B4A SINE B4 84 146 -146 1 1687 410 244 21 43 chr5 144449323 144449417 -8087842 + PB1D7 SINE Alu 23 114 -6 1 1687 432 167 47 47 chr5 144449655 144449963 -8087296 + (GTGTG)n Simple_repeat Simple_repeat 1 308 0 1 1687 522 229 123 0 chr5 144450170 144450292 -8086967 + B3 SINE B2 68 204 -12 1 1687 489 219 0 0 chr5 144450351 144450447 -8086812 + B1_Mus2 SINE Alu 40 135 -12 1 1687 233 0 62 0 chr5 144450448 144450480 -8086779 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1687 511 265 101 14 chr5 144450518 144450742 -8086517 - MLT1C LTR MaLR -18 449 222 1 1687 505 208 0 50 chr5 144450761 144450862 -8086397 - PB1D10 SINE Alu -21 96 1 1 1687 363 293 7 125 chr5 144450862 144450915 -8086344 - ID SINE ID -148 76 42 1 1687 385 296 100 54 chr5 144451478 144451757 -8085502 + B4 SINE B4 1 292 0 1 1687 341 289 101 8 chr5 144452718 144452847 -8084412 + RSINE1 SINE B4 19 159 -6 1 1687 987 197 93 0 chr5 144452911 144453104 -8084155 + B3 SINE B2 4 214 -2 1 1687 290 228 27 82 chr5 144453964 144454074 -8083185 - PB1D10 SINE Alu -1 116 13 1 1687 303 206 63 0 chr5 144454509 144454572 -8082687 + ID4_ SINE ID 6 72 -11 1 1687 305 316 99 25 chr5 144454806 144454968 -8082291 + L1M4 LINE L1 4075 4248 -1898 1 1687 313 281 131 24 chr5 144454982 144455066 -8082193 + B4A SINE B4 199 291 -1 1 1687 413 245 94 24 chr5 144455125 144455328 -8081931 - MTC LTR MaLR -15 404 196 1 1687 3169 160 50 19 chr5 144455335 144455960 -8081299 - RMER1A Other Other -13 1017 374 1 1687 575 301 103 5 chr5 144455960 144456154 -8081105 - MTC LTR MaLR -208 213 1 1 1687 353 309 57 16 chr5 144456435 144456648 -8080611 + L1M4 LINE L1 4573 4796 -1350 1 1687 293 290 160 66 chr5 144456648 144456829 -8080430 + B3A SINE B2 1 198 0 1 1687 233 327 62 22 chr5 144456829 144456840 -8080419 + L1M4 LINE L1 4796 4806 -1334 1 1687 970 40 127 0 chr5 144456840 144456966 -8080293 + B1_Mus1 SINE Alu 1 142 -6 1 1687 276 267 111 28 chr5 144457871 144457883 -8079376 + ID_B1 SINE B4 79 195 -29 1 1687 394 232 104 10 chr5 144457883 144457979 -8079280 + B1F SINE Alu 13 117 -32 1 1687 381 266 32 0 chr5 144458308 144458402 -8078857 + PB1D10 SINE Alu 21 117 0 1 1687 287 228 252 9 chr5 144458402 144458423 -8078836 + B4A SINE B4 106 248 -44 1 1687 317 259 65 2 chr5 144458918 144459073 -8078186 - MTEb LTR MaLR -7 372 199 1 1687 630 215 54 27 chr5 144459282 144459430 -8077829 - MTEb LTR MaLR -227 152 1 1 1687 1763 103 114 0 chr5 144460015 144460288 -8076971 - ORR1A2 LTR MaLR 0 327 24 1 1687 2080 225 88 42 chr5 144460660 144461204 -8076055 - RMER4B LTR ERVK 0 585 17 1 1687 217 384 48 0 chr5 144461594 144461719 -8075540 - L2a LINE L2 -175 3251 3121 1 1687 662 267 138 36 chr5 144462663 144462997 -8074262 - MTE2a LTR MaLR -9 370 3 1 1687 313 317 33 40 chr5 144463126 144463277 -8073982 - RSINE1 SINE B4 0 165 16 1 1687 375 213 297 71 chr5 144463305 144463487 -8073772 - B4A SINE B4 -69 223 1 1 1687 261 57 0 0 chr5 144465230 144465265 -8071994 + (GGCTG)n Simple_repeat Simple_repeat 3 37 0 1 1687 195 69 0 0 chr5 144467305 144467334 -8069925 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1687 315 0 0 0 chr5 144467369 144467404 -8069855 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1687 180 0 0 0 chr5 144469830 144469850 -8067409 + (CA)n Simple_repeat Simple_repeat 2 21 0 1 1687 195 129 0 0 chr5 144472056 144472087 -8065172 + (A)n Simple_repeat Simple_repeat 1 31 0 1 1687 379 239 91 9 chr5 144473623 144473733 -8063526 + B1F1 SINE Alu 1 119 -30 1 1687 1160 75 7 0 chr5 144474178 144474324 -8062935 - B1_Mus1 SINE Alu 0 148 2 1 1687 318 212 64 92 chr5 144475050 144475159 -8062100 + B4A SINE B4 58 163 -129 1 1687 358 210 114 44 chr5 144475082 144475224 -8062035 + PB1D7 SINE Alu 9 149 0 1 1687 332 306 105 24 chr5 144477191 144477315 -8059944 + B1F SINE Alu 1 134 -15 1 1687 370 274 39 10 chr5 144477328 144477431 -8059828 + ID_B1 SINE B4 2 107 -117 1 1687 413 221 192 0 chr5 144479129 144479233 -8058026 - B1_Mur1 SINE Alu -24 125 2 1 1687 303 286 59 30 chr5 144479290 144479391 -8057868 - B1F1 SINE Alu 0 149 46 1 1687 242 253 39 26 chr5 144479895 144479972 -8057287 + ID4 SINE ID 6 83 0 1 1687 633 139 92 9 chr5 144481359 144481468 -8055791 + B3 SINE B2 2 119 -97 1 1687 417 20 0 0 chr5 144481468 144481518 -8055741 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1687 261 279 0 0 chr5 144481615 144481676 -8055583 + tRNA-Ala-GCY_ tRNA tRNA 6 66 -9 1 1687 225 188 0 0 chr5 144481895 144481943 -8055316 + A-rich Low_complexity Low_complexity 1 48 0 1 1687 632 263 7 0 chr5 144484192 144484329 -8052930 - ID_B1 SINE B4 -1 223 86 1 1687 282 295 0 25 chr5 144485211 144485296 -8051963 + ID4 SINE ID 12 94 -58 1 1687 492 315 114 87 chr5 144485304 144485429 -8051830 + L1M4 LINE L1 4965 5094 -1052 1 1687 573 277 24 30 chr5 144485429 144485593 -8051666 - RSINE1 SINE B4 0 165 3 1 1687 492 315 114 87 chr5 144485593 144485825 -8051434 + L1M4 LINE L1 5095 5332 -814 1 1687 283 271 120 5 chr5 144485830 144485990 -8051269 + ID_B1 SINE B4 7 223 -1 1 1687 329 228 61 37 chr5 144486397 144486479 -8050780 - PB1D7 SINE Alu -2 118 35 1 1687 425 344 137 27 chr5 144486496 144486795 -8050464 + L1ME2 LINE L1 5831 6162 -2 1 1687 416 240 19 0 chr5 144487146 144487250 -8050009 - BC1_Mm scRNA scRNA -45 107 2 1 1687 21 0 0 0 chr5 144487735 144487756 -8049503 + GC_rich Low_complexity Low_complexity 1 21 0 1 1687 435 316 26 13 chr5 144487828 144487979 -8049280 + RSINE1 SINE B4 3 155 -10 1 1687 219 36 0 0 chr5 144488098 144488126 -8049133 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 1 1687 496 251 209 64 chr5 144488255 144488442 -8048817 + ID_B1 SINE B4 5 218 -6 1 1687 213 171 0 24 chr5 144489033 144489075 -8048184 + ID4 SINE ID 1 41 -42 1 1687 331 176 33 17 chr5 144489070 144489137 -8048122 + ID_B1 SINE B4 88 151 -73 1 1687 324 293 41 25 chr5 144489077 144489204 -8048055 + PB1D10 SINE Alu 10 132 -17 1 1687 487 211 18 12 chr5 144489283 144489451 -8047808 + (TA)n Simple_repeat Simple_repeat 1 169 0 1 1687 198 143 0 0 chr5 144490908 144490943 -8046316 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1687 28 29 0 0 chr5 144492548 144492583 -8044676 + GC_rich Low_complexity Low_complexity 1 35 0 1 1687 22 99 0 0 chr5 144492812 144492883 -8044376 + GC_rich Low_complexity Low_complexity 1 71 0 1 1687 21 82 0 0 chr5 144492889 144492938 -8044321 + GC_rich Low_complexity Low_complexity 1 49 0 1 1687 207 0 0 0 chr5 144493065 144493088 -8044171 + (CCG)n Simple_repeat Simple_repeat 3 25 0 1 1687 202 264 18 18 chr5 144493136 144493248 -8044011 + (CCG)n Simple_repeat Simple_repeat 2 113 0 1 1687 348 225 34 25 chr5 144494101 144494198 -8043061 + PB1D7 SINE Alu 25 117 -3 1 1687 596 215 14 84 chr5 144494527 144494669 -8042590 + B1F SINE Alu 13 144 -5 1 1687 336 176 105 12 chr5 144494857 144494943 -8042316 - PB1D10 SINE Alu -1 116 23 1 1687 236 111 0 22 chr5 144495082 144495128 -8042131 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1687 330 26 0 0 chr5 144495258 144495297 -8041962 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1687 497 230 95 0 chr5 144495669 144495795 -8041464 - B1F2 SINE Alu -4 145 8 1 1687 312 27 0 0 chr5 144495810 144495847 -8041412 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1687 258 56 0 0 chr5 144495882 144495918 -8041341 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1 1687 298 218 0 0 chr5 144495918 144495973 -8041286 - B4 SINE B4 -77 215 161 1 1687 568 265 13 38 chr5 144496097 144496254 -8041005 + RSINE1 SINE B4 4 156 -9 1 1687 613 219 0 0 chr5 144496319 144496424 -8040835 - PB1D7 SINE Alu -6 114 10 1 1687 276 0 0 64 chr5 144496728 144496775 -8040484 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1687 1133 66 0 0 chr5 144496775 144496911 -8040348 - B1_Mus2 SINE Alu -10 137 2 1 1687 350 231 108 27 chr5 144497518 144497629 -8039630 + RSINE1 SINE B4 13 132 -33 1 1687 323 360 25 36 chr5 144497684 144497880 -8039379 + ID_B1 SINE B4 15 208 -16 1 1687 227 332 93 133 chr5 144497946 144497996 -8039263 - B4 SINE B4 -25 267 221 1 1687 931 258 5 0 chr5 144497996 144498209 -8039050 - B3 SINE B2 -2 214 1 1 1687 227 332 93 133 chr5 144498209 144498436 -8038823 - B4 SINE B4 -72 220 1 1 1687 330 316 32 0 chr5 144498453 144498548 -8038711 - B1F SINE Alu -31 118 21 1 1687 219 312 64 13 chr5 144498963 144499041 -8038218 + RSINE1 SINE B4 24 105 -60 1 1687 331 292 48 111 chr5 144499108 144499237 -8038022 + ID_B1 SINE B4 9 134 -90 1 1687 509 212 65 7 chr5 144499237 144499375 -8037884 + B1_Mus1 SINE Alu 1 146 -2 1 1687 331 292 48 111 chr5 144499375 144499453 -8037806 + ID_B1 SINE B4 135 203 -21 1 1687 1115 90 7 0 chr5 144499685 144499830 -8037429 + B1_Mus1 SINE Alu 2 147 -1 1 1687 439 319 36 0 chr5 144500012 144500150 -8037109 + RSINE1 SINE B4 2 144 -21 1 1687 330 337 0 101 chr5 144500200 144500398 -8036861 + ID_B1 SINE B4 9 186 -38 2 1687 2448 73 6 0 chr5 144501125 144501442 -8035817 + ORR1A2 LTR MaLR 1 319 -8 3 1687 11224 106 123 2 chr5 144501447 144503197 -8034062 + ORR1A2-int LTR MaLR 2 1963 0 3 1687 2587 80 3 3 chr5 144503197 144503524 -8033735 + ORR1A2 LTR MaLR 1 327 0 3 1687 270 325 38 84 chr5 144503750 144503881 -8033378 + RSINE1 SINE B4 2 126 -39 4 1687 295 349 24 49 chr5 144503954 144504159 -8033100 + ID_B1 SINE B4 6 205 -19 5 1687 219 69 0 0 chr5 144504193 144504222 -8033037 + (A)n Simple_repeat Simple_repeat 1 29 0 6 1687 736 186 27 27 chr5 144504231 144504380 -8032879 + B1_Mur4 SINE Alu 2 150 0 7 1687 414 0 0 0 chr5 144504394 144504440 -8032819 + (TG)n Simple_repeat Simple_repeat 1 46 0 8 1687 252 343 78 0 chr5 144504615 144504717 -8032542 - B1F SINE Alu -32 117 8 9 1687 314 352 70 7 chr5 144505189 144505332 -8031927 + RSINE1 SINE B4 2 153 -12 1 1687 271 332 78 47 chr5 144505385 144505578 -8031681 + ID_B1 SINE B4 7 205 -19 1 1687 1170 94 37 32 chr5 144505618 144505805 -8031454 + B2_Mm2 SINE B2 2 189 -6 1 1687 1122 72 0 0 chr5 144505812 144505950 -8031309 + B1_Mus1 SINE Alu 1 138 -10 1 1687 186 43 0 0 chr5 144505952 144505975 -8031284 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1687 308 344 59 7 chr5 144506105 144506257 -8031002 - B4 SINE B4 -114 178 19 1 1687 271 303 71 27 chr5 144506292 144506404 -8030855 - B1F SINE Alu -32 117 1 1 1687 476 309 79 7 chr5 144506841 144506981 -8030278 + RSINE1 SINE B4 2 151 -14 1 1687 270 0 0 0 chr5 144506985 144507015 -8030244 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1687 184 261 123 0 chr5 144507150 144507215 -8030044 + MIRc SINE MIR 110 182 -86 1 1687 312 331 95 62 chr5 144507300 144507574 -8029685 - B4 SINE B4 -2 290 8 2 1687 376 271 84 0 chr5 144507601 144507708 -8029551 - B1F SINE Alu -33 116 1 2 1687 1267 96 11 11 chr5 144508173 144508362 -8028897 + B2_Mm1a SINE B2 4 192 -1 2 1687 1037 72 65 0 chr5 144508364 144508503 -8028756 + B1_Mus1 SINE Alu 1 148 0 2 1687 1005 92 0 0 chr5 144508541 144508683 -8028576 + (GGAAA)n Simple_repeat Simple_repeat 5 146 0 2 1687 493 304 0 31 chr5 144508693 144508822 -8028437 + RSINE1 SINE B4 1 125 -40 2 1687 297 128 0 0 chr5 144508861 144508908 -8028351 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 1687 189 0 0 0 chr5 144508908 144508928 -8028331 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1687 1184 63 0 0 chr5 144508940 144509083 -8028176 - B1_Mus1 SINE Alu -5 143 1 2 1687 233 353 56 28 chr5 144509120 144509263 -8027996 + ID_B1 SINE B4 6 152 -72 2 1687 386 0 41 0 chr5 144509312 144509361 -8027898 + (TTTC)n Simple_repeat Simple_repeat 1 51 0 3 1687 406 300 52 37 chr5 144509863 144509998 -8027261 + RSINE1 SINE B4 4 140 -25 3 1687 339 44 0 0 chr5 144510296 144510341 -8026918 + (TG)n Simple_repeat Simple_repeat 1 45 0 3 1687 281 316 110 42 chr5 144510352 144510582 -8026677 - B4A SINE B4 -36 256 7 3 1687 339 355 12 79 chr5 144511155 144511320 -8025939 + RSINE1 SINE B4 2 155 -10 3 1687 259 225 4 202 chr5 144511739 144511801 -8025458 - B4 SINE B4 -191 101 41 3 1687 1248 34 0 14 chr5 144511801 144511949 -8025310 - B1_Mus1 SINE Alu -1 147 2 3 1687 259 217 0 209 chr5 144511949 144512005 -8025254 - B4 SINE B4 -250 42 2 3 1687 216 352 44 0 chr5 144512025 144512116 -8025143 - B1F1 SINE Alu -32 117 23 3 1687 775 244 56 20 chr5 144512596 144512793 -8024466 + B3 SINE B2 2 205 -11 3 1687 284 298 52 31 chr5 144512823 144512920 -8024339 + RSINE1 SINE B4 2 100 -65 3 1687 354 321 45 40 chr5 144513025 144513223 -8024036 + ID_B1 SINE B4 7 205 -19 4 1687 366 289 142 61 chr5 144513435 144513682 -8023577 - B4 SINE B4 -21 271 5 4 1687 351 290 35 71 chr5 144514293 144514434 -8022825 + RSINE1 SINE B4 9 144 -21 4 1687 378 313 122 6 chr5 144514517 144514681 -8022578 + ID_B1 SINE B4 18 200 -24 4 1687 254 377 70 19 chr5 144514882 144515039 -8022220 - B4A SINE B4 -123 169 5 4 1687 729 267 12 6 chr5 144516806 144516968 -8020291 - RSINE1 SINE B4 0 165 3 4 1687 484 244 155 46 chr5 144517030 144517249 -8020010 - B4A SINE B4 -49 243 1 4 1687 21 57 0 0 chr5 144517601 144517636 -8019623 + AT_rich Low_complexity Low_complexity 1 35 0 4 1687 337 274 132 9 chr5 144517640 144517754 -8019505 + ID_B1 SINE B4 89 216 -8 4 1687 396 302 13 0 chr5 144518597 144518720 -8018539 - ID_B1 SINE B4 -25 199 80 4 1687 195 289 90 30 chr5 144519567 144519667 -8017592 - MIRb SINE MIR -56 212 107 5 1687 237 296 110 20 chr5 144519807 144519907 -8017352 - PB1D10 SINE Alu -7 110 2 5 1687 272 278 45 45 chr5 144519908 144520040 -8017219 - ID_B1 SINE B4 0 224 93 5 1687 629 225 36 0 chr5 144520300 144520438 -8016821 + B1F1 SINE Alu 1 143 -6 5 1687 260 257 14 0 chr5 144520481 144520555 -8016704 + ID4 SINE ID 3 77 -6 5 1687 237 273 7 0 chr5 144521093 144521163 -8016096 - B1F2 SINE Alu -73 76 5 5 1687 321 333 35 21 chr5 144521183 144521324 -8015935 - B1F SINE Alu -6 143 1 5 1687 547 209 16 65 chr5 144521568 144521691 -8015568 + B1F1 SINE Alu 1 117 -32 5 1687 316 222 0 0 chr5 144522442 144522505 -8014754 - ID4 SINE ID -18 65 3 5 1687 1217 28 7 14 chr5 144522867 144523014 -8014245 - B1_Mm SINE Alu 0 147 2 5 1687 525 304 92 25 chr5 144523187 144523662 -8013597 - L1M2 LINE L1 -714 5133 4611 6 1687 25 0 0 0 chr5 144523663 144523688 -8013571 + AT_rich Low_complexity Low_complexity 1 25 0 6 1687 627 266 50 17 chr5 144523689 144523869 -8013390 - ID_B1 SINE B4 -27 197 12 6 1687 250 229 114 0 chr5 144523879 144523949 -8013310 - B4A SINE B4 -66 226 149 6 1687 365 204 22 4 chr5 144523983 144524074 -8013185 - PB1 SINE Alu -3 117 22 6 1687 218 203 154 15 chr5 144524024 144524089 -8013170 - B4A SINE B4 -137 155 82 6 1687 341 273 79 40 chr5 144524278 144524404 -8012855 + B1F SINE Alu 9 139 -10 6 1687 464 237 88 44 chr5 144524520 144524657 -8012602 - B1F1 SINE Alu 0 149 7 6 1687 485 238 67 0 chr5 144524673 144524778 -8012481 - PB1D7 SINE Alu -8 112 1 6 1687 662 365 60 16 chr5 144524778 144525148 -8012111 + MER74B LTR ERVL 74 459 -163 6 1687 398 252 71 0 chr5 144525157 144525268 -8011991 - B1F1 SINE Alu -32 117 2 6 1687 240 247 62 41 chr5 144525287 144525384 -8011875 + MER74B LTR ERVL 446 544 -78 6 1687 431 252 173 0 chr5 144525724 144525851 -8011408 + RSINE1 SINE B4 2 150 -15 7 1687 1218 41 0 27 chr5 144526074 144526085 -8011174 - B1_Mus2 SINE Alu -1 146 139 7 1687 216 0 0 0 chr5 144526085 144526109 -8011150 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7 1687 1218 41 0 27 chr5 144526109 144526247 -8011012 - B1_Mus2 SINE Alu -9 138 1 7 1687 384 40 0 0 chr5 144526347 144526397 -8010862 + (TC)n Simple_repeat Simple_repeat 1 50 0 7 1687 393 58 0 0 chr5 144526397 144526449 -8010810 + (TG)n Simple_repeat Simple_repeat 2 53 0 7 1687 261 353 117 7 chr5 144526464 144526601 -8010658 - B4 SINE B4 -11 281 130 7 1687 728 193 68 82 chr5 144527286 144527506 -8009753 + ID_B1 SINE B4 2 218 -6 7 1687 458 250 99 23 chr5 144528107 144528238 -8009021 + ID_B1 SINE B4 79 219 -5 7 1687 30 0 0 0 chr5 144528539 144528569 -8008690 + AT_rich Low_complexity Low_complexity 1 30 0 7 1687 590 173 159 19 chr5 144528614 144528779 -8008480 - B3 SINE B2 -7 188 1 7 1687 216 324 80 44 chr5 144528791 144528904 -8008355 - ID_B1 SINE B4 -72 152 36 8 1687 359 270 1 25 chr5 144528871 144528986 -8008273 - PB1D7 SINE Alu -9 111 1 8 1687 406 0 0 0 chr5 144529294 144529349 -8007910 - L1Md_T LINE L1 0 6582 6528 8 1687 1846 143 66 32 chr5 144530514 144530861 -8006398 + ORR1B2 LTR MaLR 1 359 -8 8 1687 632 202 124 0 chr5 144530918 144531047 -8006212 - B1_Mus1 SINE Alu 0 148 4 8 1687 186 43 0 0 chr5 144532075 144532098 -8005161 + (CAGA)n Simple_repeat Simple_repeat 4 26 0 8 1687 694 200 0 0 chr5 144532296 144532411 -8004848 + B1_Mus1 SINE Alu 32 146 -2 8 1687 1573 23 0 6 chr5 144532753 144532930 -8004329 + B2_Mm2 SINE B2 2 177 -18 8 1687 315 167 83 0 chr5 144533276 144533360 -8003899 + Lx5 LINE L1 6918 7008 -42 8 1687 1211 54 0 0 chr5 144533432 144533579 -8003680 - B1_Mus2 SINE Alu 0 147 1 8 1687 21 0 0 0 chr5 144533862 144533883 -8003376 + AT_rich Low_complexity Low_complexity 1 21 0 9 1687 2500 109 211 63 chr5 144534195 144534722 -8002537 + RLTR6_Mm LTR ERV1 1 605 -49 9 1687 65837 13 12 1 chr5 144534722 144542414 -7994845 + RLTR6-int LTR ERV1 1 7778 0 9 1687 2373 110 220 63 chr5 144542414 144542919 -7994340 + RLTR6_Mm LTR ERV1 1 584 -70 9 1687 832 187 228 0 chr5 144543240 144543411 -7993848 + B3 SINE B2 1 210 -6 9 1687 871 154 29 0 chr5 144543447 144543583 -7993676 - B1_Mur4 SINE Alu -6 144 5 9 1687 1227 140 55 0 chr5 144543565 144543765 -7993494 + URR1A DNA MER1_type 16 226 0 9 1687 600 224 0 31 chr5 144544245 144544374 -7992885 + B3 SINE B2 1 125 -91 9 1687 556 211 0 68 chr5 144544372 144544489 -7992770 + RSINE1 SINE B4 57 165 0 9 1687 1460 239 25 50 chr5 144544519 144544880 -7992379 - MT2A LTR ERVL -85 448 97 9 1687 1136 62 4 42 chr5 144546516 144546583 -7990676 - B2_Mm2 SINE B2 -23 170 109 9 1687 4338 27 0 0 chr5 144546583 144547065 -7990194 + LTRIS_Mm LTR ERV1 1 482 0 9 1687 1136 28 0 40 chr5 144547065 144547169 -7990090 - B2_Mm2 SINE B2 -87 108 5 9 1687 439 353 76 33 chr5 144547173 144547448 -7989811 + MER74B LTR ERVL 86 372 -250 1 1687 493 253 107 114 chr5 144547533 144547926 -7989333 + RLTR12B LTR ERVK 132 521 -7 1 1687 442 271 19 0 chr5 144548015 144548122 -7989137 - ID_B1 SINE B4 -29 195 87 1 1687 414 0 32 32 chr5 144548145 144548208 -7989051 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 1 1687 462 148 25 0 chr5 144548208 144548263 -7988996 - B1_Mm SINE Alu -9 138 84 1 1687 3010 18 3 0 chr5 144548263 144548599 -7988660 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1687 462 148 25 0 chr5 144548599 144548614 -7988645 - B1_Mm SINE Alu -64 83 67 1 1687 55628 15 5 0 chr5 144548614 144555024 -7982235 + IAPEz-int LTR ERVK 40 6481 0 1 1687 3010 18 3 0 chr5 144555024 144555360 -7981899 + IAPLTR1a_Mm LTR ERVK 1 337 0 1 1687 697 45 0 0 chr5 144555360 144555448 -7981811 - B1_Mus2 SINE Alu -59 88 1 1 1687 437 264 52 89 chr5 144555448 144555579 -7981680 + MTEa LTR MaLR 256 379 0 1 1687 1973 249 71 44 chr5 144555579 144556165 -7981094 + MTEa-int LTR MaLR 1 602 -978 1 1687 577 275 25 6 chr5 144556165 144556326 -7980933 - RLTR23 LTR ERV1 0 430 267 1 1687 538 286 141 0 chr5 144556394 144556586 -7980673 + MTEb LTR MaLR 138 356 -23 1 1687 2680 26 2 251 chr5 144556586 144557105 -7980154 - RLTR10 LTR ERVK 0 390 1 1 1687 15519 36 45 34 chr5 144557107 144559097 -7978162 - RLTR10-int LTR ERVK -3 1984 4 1 1687 1633 52 0 0 chr5 144559111 144559304 -7977955 - B2_Mm1a SINE B2 0 193 1 1 1687 2585 26 2 273 chr5 144559319 144559851 -7977408 - RLTR10 LTR ERVK -2 388 1 1 1687 615 200 53 40 chr5 144560318 144560469 -7976790 + MTD LTR MaLR 1 153 -266 1 1687 1281 186 52 25 chr5 144560551 144560838 -7976421 + MTD LTR MaLR 125 413 -6 1 1687 630 204 75 27 chr5 144560839 144560973 -7976286 + B3 SINE B2 56 200 -16 1 1687 180 0 0 0 chr5 144560973 144560993 -7976266 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1 1687 630 204 75 27 chr5 144560993 144561004 -7976255 + B3 SINE B2 201 208 -8 1 1687 1093 36 50 7 chr5 144561175 144561316 -7975943 + B1_Mus2 SINE Alu 1 147 0 1 1687 4184 94 46 34 chr5 144561350 144561976 -7975283 + L1Md_F2 LINE L1 5940 6573 -9 1 1687 4630 86 2 3 chr5 144561975 144562582 -7974677 - L1_Mus1 LINE L1 -2 6565 5960 1 1687 863 55 0 0 chr5 144562582 144562691 -7974568 + B1_Mm SINE Alu 39 147 0 1 1687 198 103 0 0 chr5 144562691 144562720 -7974539 + (A)n Simple_repeat Simple_repeat 1 29 0 1 1687 275 214 271 0 chr5 144562850 144562920 -7974339 - B1F SINE Alu -32 117 29 1 1687 400 270 23 155 chr5 144562953 144563172 -7974087 + RMER15 LTR ERVL 4 193 -382 1 1687 857 203 198 0 chr5 144563192 144563389 -7973870 + RMER15 LTR ERVL 326 561 -14 1 1687 635 201 87 23 chr5 144563816 144563989 -7973270 + ID_B1 SINE B4 2 185 -39 1 1687 3157 51 0 5 chr5 144564234 144564628 -7972631 - L1Md_F2 LINE L1 0 6582 6191 1 1687 227 213 191 69 chr5 144564874 144565005 -7972254 - B1F SINE Alu -2 147 1 1 1687 194 0 39 0 chr5 144565276 144565302 -7971957 + (CCCA)n Simple_repeat Simple_repeat 4 30 0 1 1687 417 272 117 0 chr5 144566052 144566155 -7971104 + RSINE1 SINE B4 4 118 -47 1 1687 603 74 0 0 chr5 144566236 144566317 -7970942 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 1 1687 1211 61 0 0 chr5 144566325 144566473 -7970786 - B1_Mus1 SINE Alu 0 148 1 1 1687 292 267 22 0 chr5 144566611 144566623 -7970636 - L1MD LINE L1 -905 5454 5442 1 1687 606 338 0 51 chr5 144566623 144566857 -7970402 - ID_B1 SINE B4 -2 222 1 1 1687 292 281 27 12 chr5 144566857 144566991 -7970268 - L1MD LINE L1 -721 5441 5308 1 1687 247 284 60 24 chr5 144566957 144567040 -7970219 - L1_Rod LINE L1 -754 5093 5008 1 1687 4398 80 10 7 chr5 144567100 144567682 -7969577 - MT2B2 LTR ERVL 0 584 1 1 1687 245 242 0 88 chr5 144567710 144567778 -7969481 - L1M2 LINE L1 -1145 4998 4937 1 1687 404 299 0 70 chr5 144567789 144567904 -7969355 + ID_B1 SINE B4 110 216 -8 1 1687 1206 41 0 13 chr5 144567913 144568062 -7969197 + B1_Mus2 SINE Alu 1 147 0 1 1687 412 62 15 15 chr5 144568062 144568127 -7969132 + (CAAAA)n Simple_repeat Simple_repeat 1 65 0 1 1687 249 295 121 102 chr5 144568486 144568652 -7968607 - MLT1A1 LTR MaLR -239 169 1 1 1687 786 281 0 6 chr5 144568756 144568928 -7968331 + ID_B1 SINE B4 6 176 -48 1 1687 791 51 242 17 chr5 144568938 144569058 -7968201 + B1_Mus1 SINE Alu 1 147 -1 1 1687 212 178 0 62 chr5 144569101 144569149 -7968110 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1687 406 300 0 52 chr5 144569160 144569276 -7967983 - B4 SINE B4 0 292 183 1 1687 635 272 48 102 chr5 144569261 144569642 -7967617 - RSINE1 SINE B4 -19 273 3 1 1687 1108 83 0 0 chr5 144569642 144569786 -7967473 - B1_Mus1 SINE Alu -3 145 2 1 1687 397 303 38 0 chr5 144569817 144569949 -7967310 + B1F SINE Alu 3 139 -10 1 1687 507 170 0 0 chr5 144569952 144570052 -7967207 + (ATG)n Simple_repeat Simple_repeat 2 101 0 1 1687 661 279 64 68 chr5 144570064 144570283 -7966976 + ID_B1 SINE B4 6 223 -1 1 1687 348 218 178 39 chr5 144570489 144570618 -7966641 + L1MB7 LINE L1 6030 6176 -8 1 1687 408 341 120 14 chr5 144570633 144570841 -7966418 + B4A SINE B4 59 288 -4 1 1687 240 35 0 0 chr5 144570884 144570913 -7966346 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1687 340 342 45 65 chr5 144570963 144571163 -7966096 + MIR SINE MIR 57 259 -9 1 1687 1235 73 6 0 chr5 144571252 144571416 -7965843 - B2_Mm1t SINE B2 -28 165 1 1 1687 1140 193 94 29 chr5 144571421 144571763 -7965496 + ORR1A4-int LTR MaLR 619 982 -981 1 1687 1387 107 19 0 chr5 144571759 144571965 -7965294 + ORR1A4 LTR MaLR 120 329 0 1 1687 685 247 28 88 chr5 144572066 144572246 -7965013 - MTE2b LTR MaLR -7 372 204 1 210 508 240 41 105 chr5 144572246 144572418 -7964841 + RSINE1 SINE B4 1 161 -4 1 1688 316 309 0 0 chr5 144572482 144572563 -7964696 + ID4_ SINE ID 2 82 -1 1 1688 687 260 44 105 chr5 144572576 144572804 -7964455 - MTE2b LTR MaLR -165 214 1 1 1688 1172 49 0 7 chr5 144573097 144573241 -7964018 + B1_Mm SINE Alu 5 147 0 1 1688 214 174 42 28 chr5 144573267 144573338 -7963921 + (CAAA)n Simple_repeat Simple_repeat 2 73 0 1 1688 369 304 35 21 chr5 144573519 144573660 -7963599 + RSINE1 SINE B4 18 160 -5 1 1688 922 209 31 5 chr5 144573700 144573892 -7963367 + B3 SINE B2 4 200 -16 1 1688 2820 38 0 47 chr5 144573988 144574040 -7963219 - ORR1A0 LTR MaLR 0 346 304 1 1688 1586 58 0 0 chr5 144574040 144574230 -7963029 - B2_Mm1a SINE B2 -2 191 2 1 1688 2820 38 0 47 chr5 144574230 144574540 -7962719 - ORR1A0 LTR MaLR -43 303 1 1 1688 274 246 0 34 chr5 144574713 144574772 -7962487 - BC1_Mm scRNA scRNA -94 58 2 1 1688 550 275 7 14 chr5 144574871 144575015 -7962244 - B4A SINE B4 -22 270 128 1 1688 427 250 8 49 chr5 144575050 144575172 -7962087 + MTD LTR MaLR 8 124 -295 1 1688 575 246 24 0 chr5 144575206 144575332 -7961927 + B1_Mur1 SINE Alu 1 129 -20 1 1688 1810 107 131 13 chr5 144575389 144575702 -7961557 + MTC LTR MaLR 55 404 -17 1 1688 526 216 85 2 chr5 144575720 144575849 -7961410 + MTD LTR MaLR 238 405 -14 1 1688 281 219 58 47 chr5 144575859 144575945 -7961314 - B4A SINE B4 -199 93 7 1 1688 505 273 8 8 chr5 144576062 144576184 -7961075 - ID_B1 SINE B4 -18 206 85 1 1688 461 215 7 136 chr5 144576225 144576265 -7960994 + MT2B LTR ERVL 136 157 -444 1 1688 846 61 2 7 chr5 144576265 144576387 -7960872 + B1_Mm SINE Alu 3 119 -1 1 1688 271 342 38 0 chr5 144576721 144576800 -7960459 - B4A SINE B4 0 292 211 1 1688 576 167 0 0 chr5 144576801 144576819 -7960440 + (TG)n Simple_repeat Simple_repeat 1 18 0 1 1688 255 61 0 0 chr5 144576819 144576852 -7960407 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1688 576 167 0 0 chr5 144576852 144576965 -7960294 + (TG)n Simple_repeat Simple_repeat 2 114 0 1 1688 941 185 50 11 chr5 144576965 144577145 -7960114 - B3A SINE B2 -2 196 10 1 1688 760 239 24 62 chr5 144577141 144577162 -7960097 - B4A SINE B4 -60 232 218 1 1688 273 57 0 0 chr5 144577162 144577197 -7960062 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1688 760 239 23 61 chr5 144577197 144577394 -7959865 - B4A SINE B4 -75 217 24 1 1688 450 243 117 0 chr5 144577642 144577745 -7959514 - ID_B1 SINE B4 -2 222 108 1 1688 289 302 110 73 chr5 144577745 144577774 -7959485 - B1F SINE Alu -1 144 8 1 1688 527 96 0 12 chr5 144577804 144577888 -7959371 + (TA)n Simple_repeat Simple_repeat 2 84 0 1 1688 775 235 75 43 chr5 144577949 144578136 -7959123 + B3 SINE B2 1 193 -23 1 1688 185 277 91 15 chr5 144578261 144578327 -7958932 + L4 LINE RTE 1129 1199 -830 1 1688 504 265 27 39 chr5 144579423 144579599 -7957660 + ID_B1 SINE B4 79 248 -44 1 1688 211 317 33 0 chr5 144579591 144579651 -7957608 + ID4_ SINE ID 19 80 -3 1 1688 225 0 0 0 chr5 144580491 144580516 -7956743 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1688 1207 61 0 0 chr5 144580516 144580663 -7956596 - B1_Mus2 SINE Alu 0 147 1 1 1688 511 208 116 44 chr5 144581212 144581393 -7955866 - B3A SINE B2 -2 196 3 1 1688 763 215 71 52 chr5 144581441 144581652 -7955607 - ID_B1 SINE B4 -5 219 5 1 1688 1209 118 31 21 chr5 144581817 144582008 -7955251 - B2_Mm2 SINE B2 -2 193 1 1 1688 341 226 53 32 chr5 144582234 144582372 -7954887 + B1F2 SINE Alu 5 142 -7 1 1688 210 167 24 0 chr5 144582376 144582418 -7954841 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1688 355 300 22 65 chr5 144632446 144632585 -7904674 - B4 SINE B4 -156 136 4 1 1688 346 246 60 60 chr5 144633254 144633371 -7903888 - PB1D10 SINE Alu 0 117 1 1 1688 648 205 125 7 chr5 144633371 144633419 -7903840 - ID_B1 SINE B4 -133 91 26 1 1688 237 253 89 51 chr5 144633464 144633543 -7903716 - ID2 SINE ID 0 83 2 1 1688 543 135 0 43 chr5 144633599 144633738 -7903521 + CT-rich Low_complexity Low_complexity 1 133 0 1 1688 604 190 265 18 chr5 144633780 144633946 -7903313 - B3 SINE B2 -7 209 3 1 1688 230 179 18 0 chr5 144633950 144634006 -7903253 + CT-rich Low_complexity Low_complexity 1 57 0 1 1688 247 325 19 19 chr5 144634017 144634062 -7903197 + polypyrimidine Low_complexity Low_complexity 115 158 0 1 1688 731 163 30 23 chr5 144634062 144634194 -7903065 - B1_Mur3 SINE Alu -12 137 5 2 1688 247 325 19 19 chr5 144634194 144634305 -7902954 + CT-rich Low_complexity Low_complexity 3 114 0 2 1688 454 291 39 8 chr5 144634440 144634568 -7902691 - ID_B1 SINE B4 -7 217 86 2 1688 479 234 201 17 chr5 144634817 144634991 -7902268 + B3 SINE B2 2 207 -9 2 1688 224 247 53 0 chr5 144635043 144635101 -7902158 + ID4 SINE ID 12 75 -77 2 1688 324 0 0 0 chr5 144635101 144635137 -7902122 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1688 218 307 80 0 chr5 144635137 144635155 -7902104 + BC1_Mm scRNA scRNA 76 93 -59 2 1688 353 240 90 0 chr5 144635712 144635812 -7901447 - B1F SINE Alu -24 125 17 2 1688 211 250 55 14 chr5 144635813 144635886 -7901373 - L2 LINE L2 -513 2906 2831 2 1688 212 233 67 0 chr5 144635980 144636040 -7901219 - L2 LINE L2 -734 2685 2622 2 1688 550 223 56 21 chr5 144636130 144636272 -7900987 + B1F2 SINE Alu 1 147 -2 2 1688 335 214 34 43 chr5 144636643 144636760 -7900499 - PB1D10 SINE Alu -1 116 1 2 1688 213 325 64 13 chr5 144636871 144636949 -7900310 - B1_Mur2 SINE Alu -1 148 67 2 1688 364 281 12 0 chr5 144636879 144636961 -7900298 - ID_B1 SINE B4 -9 215 133 2 1688 234 81 0 0 chr5 144637076 144637113 -7900146 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 2 1688 1178 88 0 0 chr5 144637113 144637261 -7899998 - B1_Mus1 SINE Alu 0 148 1 2 1688 507 362 58 23 chr5 144637314 144637574 -7899685 - B4A SINE B4 -22 270 2 2 1688 247 25 0 48 chr5 144637587 144637629 -7899630 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2 1688 364 328 23 15 chr5 144637841 144637974 -7899285 + B1F SINE Alu 7 140 -9 2 1688 533 309 36 67 chr5 144638784 144638855 -7898404 + B4 SINE B4 2 71 -221 2 1688 1270 41 0 0 chr5 144638855 144639002 -7898257 + B1_Mm SINE Alu 1 147 0 2 1688 533 309 36 67 chr5 144639002 144639017 -7898242 + B4 SINE B4 72 127 -165 2 1688 691 232 14 0 chr5 144639017 144639155 -7898104 + B1_Mur1 SINE Alu 1 140 -9 2 1688 533 309 36 67 chr5 144639155 144639183 -7898076 + B4 SINE B4 128 246 -46 2 1688 780 214 116 15 chr5 144639463 144639662 -7897597 + ID_B1 SINE B4 6 224 0 2 1688 1386 73 11 0 chr5 144639800 144639977 -7897282 + B2_Mm1t SINE B2 1 179 -14 2 1688 294 182 0 36 chr5 144640041 144640108 -7897151 + B2_Mm2 SINE B2 47 109 -107 2 1688 252 80 160 0 chr5 144640097 144640147 -7897112 + B2_Mm2 SINE B2 137 194 -1 2 1688 559 290 81 59 chr5 144640430 144640701 -7896558 - B4 SINE B4 -14 278 2 2 1688 2394 162 38 36 chr5 144640774 144641249 -7896010 - RLTR28B LTR ERVL 0 481 6 2 1688 316 256 37 0 chr5 144641253 144641335 -7895924 + ID_B1 SINE B4 132 216 -8 2 1688 240 217 129 32 chr5 144641426 144641488 -7895771 + PB1D9 SINE Alu 48 115 -5 2 1688 309 294 119 0 chr5 144641493 144641619 -7895640 + B1F SINE Alu 8 148 -1 2 1688 354 255 90 20 chr5 144641887 144641987 -7895272 - PB1D9 SINE Alu -1 119 13 2 1688 716 266 6 12 chr5 144641992 144642152 -7895107 - RSINE1 SINE B4 0 165 7 2 1688 1528 47 10 20 chr5 144642459 144642654 -7894605 + B2_Mm1a SINE B2 1 193 0 2 1688 596 171 171 0 chr5 144642754 144642877 -7894382 + B1_Mus2 SINE Alu 3 146 -1 2 1688 442 183 75 28 chr5 144643165 144643272 -7893987 - PB1D9 SINE Alu -8 112 1 2 1688 30 45 0 0 chr5 144643272 144643316 -7893943 + AT_rich Low_complexity Low_complexity 1 44 0 2 1688 755 165 35 0 chr5 144643318 144643433 -7893826 - PB1D9 SINE Alu -1 119 1 2 1688 286 288 12 0 chr5 144643525 144643605 -7893654 - B1F SINE Alu -68 81 1 2 1688 25 0 0 0 chr5 144643935 144643960 -7893299 + AT_rich Low_complexity Low_complexity 1 25 0 2 1688 356 259 8 77 chr5 144644051 144644168 -7893091 + B4A SINE B4 175 283 -9 2 1688 352 302 104 60 chr5 144644239 144644343 -7892916 + MER58B DNA MER1_type 104 206 -135 2 1688 587 246 89 84 chr5 144644343 144644534 -7892725 - B3A SINE B2 -6 192 1 2 1688 352 302 104 60 chr5 144644534 144644612 -7892647 + MER58B DNA MER1_type 207 294 -47 2 1688 561 250 25 0 chr5 144645082 144645218 -7892041 - B1F SINE Alu -5 144 6 2 1688 207 0 0 0 chr5 144645258 144645281 -7891978 + (TC)n Simple_repeat Simple_repeat 2 24 0 2 1688 374 241 73 89 chr5 144645285 144645408 -7891851 - ID_B1 SINE B4 -9 215 95 2 1688 716 241 80 34 chr5 144646019 144646195 -7891064 - ID_B1 SINE B4 -2 222 39 2 1688 401 212 50 0 chr5 144646562 144646642 -7890617 + B4 SINE B4 1 84 -208 2 1688 314 243 57 0 chr5 144646642 144646712 -7890547 - ID_B1 SINE B4 -87 137 64 2 1688 602 229 84 7 chr5 144646745 144646899 -7890360 - Lx7 LINE L1 -329 7367 7202 2 1688 1024 198 61 0 chr5 144646899 144647096 -7890163 - ORR1D1 LTR MaLR -165 209 1 2 1688 643 255 71 33 chr5 144647353 144647564 -7889695 - ID_B1 SINE B4 -5 219 1 2 1688 447 154 88 25 chr5 144647924 144648004 -7889255 + MTE2a LTR MaLR 1 85 -294 2 1688 543 202 0 0 chr5 144648004 144648118 -7889141 + (TG)n Simple_repeat Simple_repeat 2 115 0 2 1688 1078 265 100 7 chr5 144648119 144648419 -7888840 + MTE2a LTR MaLR 52 379 0 2 1688 410 241 135 96 chr5 144648502 144648658 -7888601 - B4A SINE B4 0 292 131 2 1688 321 227 141 20 chr5 144648827 144648926 -7888333 + PB1D7 SINE Alu 10 120 0 2 1688 619 267 12 24 chr5 144648927 144649092 -7888167 + RSINE1 SINE B4 3 165 0 2 1688 543 182 152 45 chr5 144649231 144649363 -7887896 - B1_Mm SINE Alu -1 146 1 2 1688 1162 171 88 4 chr5 144649366 144649606 -7887653 - RMER1B Other Other -2 1064 805 2 1688 777 264 16 21 chr5 144650521 144650707 -7886552 + B4A SINE B4 3 187 -105 2 1688 186 43 0 0 chr5 144650998 144651021 -7886238 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2 1688 740 147 133 44 chr5 144651041 144651176 -7886083 + B1_Mus1 SINE Alu 2 148 0 2 1688 257 226 95 16 chr5 144651343 144651406 -7885853 + PB1D10 SINE Alu 49 116 -1 2 1688 362 288 92 46 chr5 144652840 144653058 -7884201 - B4A SINE B4 -10 282 55 2 1688 1311 26 0 0 chr5 144654208 144654363 -7882896 + (CA)n Simple_repeat Simple_repeat 1 155 0 2 1688 320 210 196 20 chr5 144654637 144654739 -7882520 - PB1D9 SINE Alu 0 120 1 2 1688 347 286 0 62 chr5 144654803 144654900 -7882359 + ID_B1 SINE B4 79 169 -55 2 1688 758 236 7 0 chr5 144655193 144655341 -7881918 + B1F SINE Alu 1 149 0 2 1688 434 286 157 6 chr5 144656003 144656022 -7881237 - ID_B1 SINE B4 -46 246 186 2 1688 632 140 167 0 chr5 144656022 144656136 -7881123 - B1_Mus1 SINE Alu 0 148 16 2 1688 434 286 157 6 chr5 144656136 144656175 -7881084 - ID_B1 SINE B4 -46 185 48 2 1688 319 258 146 0 chr5 144656313 144656402 -7880857 + RSINE1 SINE B4 24 125 -40 2 1688 234 0 0 0 chr5 144656406 144656432 -7880827 + (CATGC)n Simple_repeat Simple_repeat 4 29 0 2 1688 2357 60 23 3 chr5 144656455 144656757 -7880502 + L1_Mus1 LINE L1 6260 6567 0 2 1688 1273 117 6 6 chr5 144656786 144656966 -7880293 - B2_Mm2 SINE B2 -14 181 2 2 1688 509 211 55 0 chr5 144657113 144657222 -7880037 - ID_B1 SINE B4 -6 218 104 2 1688 216 0 0 0 chr5 144657222 144657246 -7880013 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 1688 369 0 0 0 chr5 144657246 144657286 -7879973 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1688 329 167 39 16 chr5 144657409 144657537 -7879722 + (TG)n Simple_repeat Simple_repeat 1 131 0 2 1688 610 271 107 37 chr5 144657537 144657809 -7879450 - B4A SINE B4 0 292 2 2 1688 575 265 7 7 chr5 144657816 144657964 -7879295 - B1F1 SINE Alu 0 149 2 2 1688 222 327 38 19 chr5 144658831 144658937 -7878322 - BC1_Mm scRNA scRNA -30 122 15 2 1688 242 185 4 20 chr5 144658980 144659036 -7878223 - B1F SINE Alu -83 66 10 2 1688 237 250 0 16 chr5 144658986 144659047 -7878212 - ID_B1 SINE B4 -85 139 80 2 1688 609 192 160 0 chr5 144659258 144659383 -7877876 + B3A SINE B2 1 145 -53 2 1688 324 0 0 0 chr5 144659390 144659426 -7877833 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 1688 27 29 0 0 chr5 144660230 144660264 -7876995 + AT_rich Low_complexity Low_complexity 1 34 0 2 1688 1230 48 7 0 chr5 144660389 144660535 -7876724 + B1_Mus2 SINE Alu 1 147 0 2 1688 321 301 78 35 chr5 144660742 144660883 -7876376 + RSINE1 SINE B4 5 151 -14 2 1688 381 289 16 150 chr5 144661546 144661733 -7875526 + RMER30 DNA MER1_type 41 202 0 2 1688 279 217 70 28 chr5 144661735 144661806 -7875453 + MER5A1 DNA MER1_type 1 74 -92 2 1688 235 282 123 46 chr5 144662400 144662530 -7874729 - Tigger6a DNA MER2_type -817 266 127 2 1688 961 151 0 7 chr5 144664201 144664348 -7872911 - B1_Mus1 SINE Alu -2 146 1 2 1688 503 180 129 16 chr5 144664367 144664491 -7872768 - B1_Mur2 SINE Alu 0 149 12 2 1688 214 350 58 0 chr5 144664564 144664667 -7872592 + RSINE1 SINE B4 55 163 -2 2 1688 306 326 14 52 chr5 144664880 144664992 -7872267 + PB1D7 SINE Alu 2 112 -8 2 1688 476 179 123 0 chr5 144665708 144665814 -7871445 + PB1D9 SINE Alu 2 120 0 2 1688 248 291 23 23 chr5 144665893 144665981 -7871278 - MIR SINE MIR -102 160 73 2 1688 443 280 40 0 chr5 144665992 144666117 -7871142 + ID_B1 SINE B4 95 224 0 2 1688 595 236 178 0 chr5 144666121 144666295 -7870964 + B4 SINE B4 2 206 -86 2 1688 313 194 194 0 chr5 144667146 144667239 -7870020 - PB1D7 SINE Alu -1 119 9 2 1688 420 20 0 0 chr5 144667240 144667289 -7869970 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1688 491 271 38 15 chr5 144667682 144667813 -7869446 + RSINE1 SINE B4 14 147 -18 2 1688 327 248 70 111 chr5 144667919 144667962 -7869297 - YREP_Mm Unknown Unknown -1469 343 215 3 1688 548 224 50 25 chr5 144667962 144668081 -7869178 + ID_B1 SINE B4 93 214 -10 3 1688 669 250 40 15 chr5 144668194 144668393 -7868866 - B3 SINE B2 -10 206 3 3 1688 345 285 22 89 chr5 144668660 144668795 -7868464 - RSINE1 SINE B4 -29 136 11 3 1688 772 204 75 65 chr5 144669013 144669361 -7867898 - RMER10A LTR ERVL -9 433 1 3 1688 285 205 73 49 chr5 144669372 144669454 -7867805 + RLTR25B LTR ERVK 426 509 -519 3 1688 896 37 0 0 chr5 144669388 144669497 -7867762 + B1_Mus1 SINE Alu 40 148 0 3 1688 337 231 119 119 chr5 144669576 144669694 -7867565 + ID_B1 SINE B4 95 212 -12 3 1688 281 218 0 0 chr5 144671469 144671524 -7865735 - PB1D10 SINE Alu -43 74 20 3 1688 349 296 96 0 chr5 144671866 144671981 -7865278 + ID_B1 SINE B4 99 224 0 3 1688 1155 62 7 0 chr5 144672277 144672423 -7864836 + B1_Mus2 SINE Alu 1 147 0 3 1688 1517 52 0 25 chr5 144672944 144673140 -7864119 - B2_Mm2 SINE B2 -3 192 2 3 1688 874 249 27 22 chr5 144673255 144673477 -7863782 - RMER15 LTR ERVL -1 574 352 3 1688 210 326 168 32 chr5 144673661 144673851 -7863408 - MIR SINE MIR -28 234 19 3 1688 204 125 0 0 chr5 144673938 144673970 -7863289 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3 1688 229 277 145 0 chr5 144674023 144674106 -7863153 + ZP3AR Satellite Satellite 44 138 -74 3 1688 218 286 0 16 chr5 144674064 144674128 -7863131 + ID4_ SINE ID 2 64 -19 3 1688 227 271 129 0 chr5 144674839 144674909 -7862350 + ID4_ SINE ID 3 81 -2 3 1688 228 293 79 31 chr5 144675318 144675445 -7861814 - ID_B1 SINE B4 -90 134 2 3 1688 1117 66 0 0 chr5 144675748 144675884 -7861375 + B1_Mus2 SINE Alu 2 137 -10 3 1688 438 20 0 0 chr5 144675894 144675945 -7861314 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1688 25 0 0 0 chr5 144675983 144676008 -7861251 + AT_rich Low_complexity Low_complexity 1 25 0 3 1688 246 219 172 30 chr5 144676008 144676107 -7861152 - PB1D9 SINE Alu -5 115 3 3 1688 405 231 22 0 chr5 144676185 144676276 -7860983 - MTD LTR MaLR -326 93 1 3 1688 296 333 25 58 chr5 144676400 144676521 -7860738 + PB1D10 SINE Alu 1 117 0 3 1688 324 250 51 43 chr5 144676570 144676687 -7860572 - PB1D7 SINE Alu -2 118 1 3 1688 919 274 75 4 chr5 144676714 144676981 -7860278 - B4A SINE B4 -6 286 1 3 1688 554 225 67 82 chr5 144677433 144677627 -7859632 - B3A SINE B2 0 198 8 3 1688 1224 48 0 0 chr5 144677643 144677789 -7859470 - B1_Mus2 SINE Alu 0 147 2 3 1688 28 38 0 19 chr5 144677957 144677975 -7859284 + AT_rich Low_complexity Low_complexity 1 18 0 3 1688 1451 84 5 0 chr5 144677975 144678165 -7859094 - B2_Mm1a SINE B2 -1 192 2 3 1688 28 38 0 19 chr5 144678165 144678199 -7859060 + AT_rich Low_complexity Low_complexity 1 34 0 3 1688 1470 197 162 0 chr5 144678827 144679184 -7858075 - MTD LTR MaLR -14 405 6 3 1688 291 324 0 13 chr5 144679410 144679485 -7857774 - B4 SINE B4 -4 288 215 3 1688 23 0 0 0 chr5 144679497 144679520 -7857739 + AT_rich Low_complexity Low_complexity 1 23 0 3 1688 1176 62 7 0 chr5 144679520 144679666 -7857593 - B1_Mus1 SINE Alu 0 148 2 3 1688 1114 124 20 56 chr5 144679673 144679870 -7857389 - B2_Mm2 SINE B2 -5 190 1 3 1688 939 268 32 18 chr5 144679872 144680089 -7857170 - B4 SINE B4 -65 227 8 3 1688 435 248 83 37 chr5 144680207 144680316 -7856943 + PB1D10 SINE Alu 1 114 -3 3 1688 907 248 15 15 chr5 144680507 144680708 -7856551 - ID_B1 SINE B4 -9 215 15 3 1688 871 156 36 67 chr5 144680798 144680991 -7856268 + B2_Mm2 SINE B2 1 187 -8 3 1688 795 230 0 42 chr5 144681029 144681197 -7856062 + B3 SINE B2 54 214 -2 3 1688 265 273 0 0 chr5 144681701 144681764 -7855495 - PB1D7 SINE Alu -51 66 4 3 1688 253 341 0 56 chr5 144681764 144681798 -7855461 - B4 SINE B4 -204 88 60 3 1688 363 242 58 0 chr5 144681852 144681960 -7855299 + PB1D10 SINE Alu 1 116 -1 3 1688 210 71 0 0 chr5 144681987 144682015 -7855244 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1688 991 68 121 0 chr5 144682015 144682147 -7855112 - B1_Mus1 SINE Alu 0 148 1 3 1688 279 307 41 0 chr5 144682266 144682347 -7854912 - ID4 SINE ID -62 90 7 3 1688 560 222 42 8 chr5 144682366 144682484 -7854775 - B1F1 SINE Alu -11 138 17 3 1688 222 241 33 49 chr5 144682439 144682500 -7854759 - B4A SINE B4 -147 145 86 3 1688 662 186 194 42 chr5 144682564 144682755 -7854504 + ID_B1 SINE B4 1 220 -4 3 1688 539 276 60 30 chr5 144683541 144683709 -7853550 - B3A SINE B2 -22 176 4 3 1688 983 235 141 4 chr5 144683910 144684166 -7853093 + B4A SINE B4 2 292 0 3 1688 1548 53 0 5 chr5 144684525 144684714 -7852545 - B2_Mm2 SINE B2 -4 191 4 3 1688 840 173 22 0 chr5 144684880 144685019 -7852240 + B1_Mur1 SINE Alu 8 149 0 3 1688 282 228 86 129 chr5 144685142 144685156 -7852103 + MT2B LTR ERVL 155 163 -438 3 1688 505 235 67 8 chr5 144685156 144685276 -7851983 + B1F1 SINE Alu 2 128 -21 3 1688 321 26 0 0 chr5 144685425 144685463 -7851796 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 1688 484 270 97 12 chr5 144685592 144685757 -7851502 - B3A SINE B2 -18 180 2 3 1688 362 304 36 0 chr5 144685760 144685872 -7851387 - PB1D10 SINE Alu 0 117 2 3 1688 189 107 0 0 chr5 144687250 144687278 -7849981 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 3 1688 618 250 24 0 chr5 144687438 144687562 -7849697 - ID_B1 SINE B4 -2 222 96 3 1688 324 111 0 0 chr5 144687576 144687630 -7849629 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 1688 427 333 0 0 chr5 144687632 144687749 -7849510 - PB1D10 SINE Alu 0 117 1 3 1688 243 250 62 0 chr5 144687964 144688028 -7849231 + L1MC LINE L1 5724 5791 -2091 3 1688 238 211 141 0 chr5 144688060 144688131 -7849128 + PB1D10 SINE Alu 32 112 -5 3 1688 405 142 302 50 chr5 144688223 144688342 -7848917 - B2_Mm2 SINE B2 0 195 47 3 1688 1163 90 7 0 chr5 144688382 144688537 -7848722 - B2_Mm1t SINE B2 -36 157 2 3 1688 1153 51 7 0 chr5 144688719 144688857 -7848402 - B1_Mm SINE Alu -8 139 1 3 1688 21 0 0 0 chr5 144688887 144688908 -7848351 + AT_rich Low_complexity Low_complexity 1 21 0 3 1688 382 289 104 25 chr5 144689293 144689456 -7847803 - MIR SINE MIR -15 247 72 3 1688 590 171 48 0 chr5 144689572 144689677 -7847582 - PB1D9 SINE Alu -8 112 3 3 1688 563 324 58 62 chr5 144691126 144691205 -7846054 + B4A SINE B4 16 95 -197 3 1688 1221 41 14 0 chr5 144691205 144691350 -7845909 + B1_Mm SINE Alu 1 147 0 3 1688 563 324 58 62 chr5 144691350 144691527 -7845732 + B4A SINE B4 96 271 -21 3 1688 372 355 8 8 chr5 144692161 144692286 -7844973 + PB1 SINE Alu 1 125 -2 3 1688 450 0 0 0 chr5 144692349 144692399 -7844860 + (TG)n Simple_repeat Simple_repeat 1 50 0 3 1688 407 276 57 8 chr5 144692474 144692598 -7844661 - ID_B1 SINE B4 -9 215 86 3 1688 526 222 95 0 chr5 144692737 144692863 -7844396 - B1_Mur1 SINE Alu -11 138 1 3 1688 310 217 210 34 chr5 144693251 144693370 -7843889 + B1F2 SINE Alu 2 141 -8 3 1688 433 319 60 16 chr5 144693432 144693617 -7843642 + MLT1D LTR MaLR 1 193 -312 3 1688 701 166 115 14 chr5 144694649 144694857 -7842402 - RCHARR1 DNA MER1_type 0 974 746 3 1688 754 286 11 32 chr5 144694862 144695050 -7842209 - B3A SINE B2 0 198 15 3 1688 211 228 105 75 chr5 144695061 144695194 -7842065 - B2_Mm2 SINE B2 -5 190 54 3 1688 654 256 43 14 chr5 144695103 144695242 -7842017 - RSINE1 SINE B4 -19 146 4 3 1688 373 252 9 104 chr5 144695356 144695471 -7841788 + MT2B LTR ERVL 155 258 -343 3 1688 847 163 0 34 chr5 144695372 144695518 -7841741 + B1_Mus1 SINE Alu 8 148 0 3 1688 571 240 179 0 chr5 144695519 144695698 -7841561 - RCHARR1 DNA MER1_type -490 484 274 3 1688 206 0 69 0 chr5 144695698 144695727 -7841532 + (GCATG)n Simple_repeat Simple_repeat 1 31 0 3 1688 659 274 35 40 chr5 144695768 144695966 -7841293 + B3A SINE B2 1 197 -1 3 1688 683 295 57 5 chr5 144696000 144696194 -7841065 - RCHARR1 DNA MER1_type -768 206 3 3 1688 253 119 47 23 chr5 144696209 144696252 -7841007 + B4 SINE B4 40 83 -209 3 1688 745 195 84 18 chr5 144696261 144696428 -7840831 + B3 SINE B2 39 216 0 3 1688 591 287 6 39 chr5 144696476 144696654 -7840605 + B4A SINE B4 121 292 0 3 1688 28 79 0 0 chr5 144696913 144696976 -7840283 + AT_rich Low_complexity Low_complexity 1 63 0 3 1688 665 48 0 0 chr5 144696997 144697081 -7840178 - BGLII LTR ERVK -337 84 1 3 1688 487 250 31 24 chr5 144697105 144697232 -7840027 - RSINE1 SINE B4 -36 129 2 3 1688 612 259 108 0 chr5 144697236 144697402 -7839857 - B4A SINE B4 -85 207 24 3 1688 609 282 13 19 chr5 144697458 144697617 -7839642 + RSINE1 SINE B4 4 161 -4 3 1688 894 126 35 0 chr5 144698340 144698483 -7838776 - B1_Mus1 SINE Alu 0 148 1 3 1688 483 284 0 68 chr5 144698541 144698658 -7838601 - B4A SINE B4 -100 192 84 3 1688 267 194 0 0 chr5 144698716 144698778 -7838481 + T-rich Low_complexity Low_complexity 1 62 0 3 1688 528 269 10 0 chr5 144698779 144698883 -7838376 + B4A SINE B4 1 105 -187 3 1688 1122 76 21 0 chr5 144698898 144699042 -7838217 + B1_Mus1 SINE Alu 1 147 -1 3 1688 23 0 0 0 chr5 144699042 144699065 -7838194 + AT_rich Low_complexity Low_complexity 1 23 0 4 1688 1376 70 16 5 chr5 144699084 144699272 -7837987 - B2_Mm1t SINE B2 -2 191 2 4 1688 318 285 139 64 chr5 144699315 144699581 -7837678 + B4A SINE B4 5 290 -2 4 1688 241 276 141 10 chr5 144699596 144699695 -7837564 - L1MB4 LINE L1 -55 6125 6014 4 1688 928 34 8 0 chr5 144699977 144700094 -7837165 - B1_Mus2 SINE Alu 0 147 30 4 1688 289 257 43 0 chr5 144700279 144700349 -7836910 - MER2B DNA MER2_type -48 288 216 4 1688 525 227 76 57 chr5 144700352 144700512 -7836747 + B3A SINE B2 1 162 -36 4 1688 212 0 0 35 chr5 144700512 144700541 -7836718 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1688 251 269 90 124 chr5 144700541 144700558 -7836701 + B2_Mm2 SINE B2 158 172 -23 4 1688 354 222 0 0 chr5 144700582 144700659 -7836600 - ID4 SINE ID -54 98 22 4 1688 287 294 0 0 chr5 144700606 144700674 -7836585 - tRNA-Ala-GCY_ tRNA tRNA -7 68 1 4 1688 1122 251 186 12 chr5 144700954 144701293 -7835966 + MTD LTR MaLR 8 405 -14 4 1688 312 284 12 0 chr5 144701327 144701408 -7835851 + ID4 SINE ID 1 82 -1 4 1688 1234 54 0 0 chr5 144701655 144701802 -7835457 + B1_Mus1 SINE Alu 2 148 0 4 1688 327 243 201 7 chr5 144701821 144701970 -7835289 - L1MB3 LINE L1 -1 6182 6005 4 1688 270 0 0 0 chr5 144702087 144702117 -7835142 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 4 1688 442 209 21 21 chr5 144702161 144702254 -7835005 - B3A SINE B2 -3 195 103 4 1688 240 264 110 14 chr5 144702392 144702465 -7834794 - ID4 SINE ID -3 80 1 4 1688 26 0 0 0 chr5 144703020 144703046 -7834213 + AT_rich Low_complexity Low_complexity 1 26 0 4 1688 1025 90 124 18 chr5 144703048 144703217 -7834042 - B2_Mm2 SINE B2 -8 187 1 4 1688 239 264 101 62 chr5 144703230 144703260 -7833999 - B2_Mm2 SINE B2 -9 186 161 4 1688 395 52 0 17 chr5 144703260 144703319 -7833940 + (TG)n Simple_repeat Simple_repeat 2 59 0 4 1688 239 264 101 62 chr5 144703319 144703466 -7833793 - B2_Mm2 SINE B2 -35 160 2 4 1689 937 138 14 7 chr5 144703498 144703644 -7833615 + B1_Mur2 SINE Alu 1 147 -2 4 1689 306 196 78 39 chr5 144703668 144703768 -7833491 + PB1D10 SINE Alu 7 117 0 4 1689 316 309 20 20 chr5 144705576 144705675 -7831584 - L1MB5 LINE L1 -87 6097 5999 4 1689 858 178 7 14 chr5 144705766 144705914 -7831345 + B1_Mur1 SINE Alu 2 148 -1 4 1689 420 322 72 37 chr5 144705943 144706199 -7831060 - ORR1D2 LTR MaLR -37 342 63 4 1689 657 10 0 56 chr5 144706199 144706307 -7830952 + (CACAA)n Simple_repeat Simple_repeat 2 103 0 4 1689 420 338 97 40 chr5 144706307 144706360 -7830899 - ORR1D2 LTR MaLR -308 62 9 4 1689 682 225 43 43 chr5 144706377 144706563 -7830696 - L1MB5 LINE L1 -249 5925 5740 4 1689 327 303 164 9 chr5 144706590 144706700 -7830559 - RSINE1 SINE B4 -14 151 25 4 1689 449 294 35 7 chr5 144706713 144706857 -7830402 - B1F SINE Alu -1 148 1 4 1689 302 268 23 23 chr5 144706913 144707001 -7830258 - RMER30 DNA MER1_type -1 201 114 4 1689 471 285 46 114 chr5 144707032 144707313 -7829946 + ORR1E LTR MaLR 96 357 -2 4 1689 541 237 65 109 chr5 144707367 144707651 -7829608 - B4A SINE B4 0 292 2 4 1689 248 270 62 16 chr5 144708273 144708337 -7828922 - ID4_ SINE ID -3 80 14 4 1689 501 219 17 9 chr5 144708382 144708497 -7828762 - PB1D10 SINE Alu 0 117 2 4 1689 306 0 0 0 chr5 144708508 144708542 -7828717 + (TG)n Simple_repeat Simple_repeat 1 34 0 4 1689 683 259 55 12 chr5 144708564 144708728 -7828531 - B3A SINE B2 -8 190 20 4 1689 705 257 126 15 chr5 144708728 144708989 -7828270 + B4A SINE B4 2 291 -1 4 1689 1022 253 98 74 chr5 144709513 144709880 -7827379 + MTE2a LTR MaLR 1 376 -3 4 1689 251 229 0 32 chr5 144710948 144711011 -7826248 + G-rich Low_complexity Low_complexity 3 63 0 4 1689 196 77 0 49 chr5 144711342 144711383 -7825876 + (TTA)n Simple_repeat Simple_repeat 2 40 0 4 1689 307 105 0 17 chr5 144711383 144711441 -7825818 - Lx2A LINE L1 -21 6987 6931 4 1689 6887 111 14 31 chr5 144711441 144712505 -7824754 - Lx2A LINE L1 -32 6976 5931 4 1689 207 0 0 0 chr5 144712507 144712530 -7824729 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1689 1219 48 0 7 chr5 144712540 144712688 -7824571 - B1_Mm SINE Alu 0 147 1 4 1689 26318 132 16 28 chr5 144712688 144713913 -7823346 - Lx2A LINE L1 -1067 5941 4738 4 1689 188 0 74 0 chr5 144713913 144713940 -7823319 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1689 26318 152 21 14 chr5 144713940 144714081 -7823178 - Lx2A LINE L1 -1149 4737 4614 4 1689 1452 79 16 0 chr5 144714081 144714271 -7822988 + B2_Mm2 SINE B2 1 193 -2 4 1689 26318 150 18 13 chr5 144714271 144717959 -7819300 - Lx2A LINE L1 -1273 4613 854 4 1689 222 215 65 139 chr5 144718351 144718459 -7818800 - PB1 SINE Alu -20 107 8 4 1689 550 216 179 19 chr5 144718366 144718522 -7818737 - ID_B1 SINE B4 -33 191 11 4 1689 504 257 104 0 chr5 144718599 144718743 -7818516 - RSINE1 SINE B4 -4 161 3 4 1689 307 223 117 0 chr5 144718756 144718850 -7818409 - PB1D10 SINE Alu -9 108 4 4 1689 401 243 290 7 chr5 144718918 144719063 -7818196 - B3A SINE B2 -11 187 2 4 1689 784 173 155 11 chr5 144719518 144719699 -7817560 + B3 SINE B2 2 208 -8 4 1689 909 188 73 0 chr5 144719763 144719955 -7817304 + B3 SINE B2 1 206 -10 4 1689 1943 190 30 11 chr5 144719986 144720359 -7816900 - RLTR14 LTR ERV1 0 382 3 4 1689 372 189 27 0 chr5 144720419 144720493 -7816766 - B3A SINE B2 -122 76 1 4 1689 1080 247 134 20 chr5 144720931 144721274 -7815985 + Lx8 LINE L1 6971 7352 -121 4 1689 400 249 114 44 chr5 144721673 144721828 -7815431 + B4A SINE B4 126 277 -15 4 1689 390 21 0 0 chr5 144721874 144721921 -7815338 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1689 1127 75 0 20 chr5 144722352 144722502 -7814757 - B1_Mus2 SINE Alu 0 147 1 4 1689 773 254 22 101 chr5 144722546 144722695 -7814564 + ID_B1 SINE B4 2 149 -75 4 1689 652 249 82 6 chr5 144722695 144722877 -7814382 + B3A SINE B2 1 196 -2 4 1689 773 254 22 101 chr5 144722877 144722955 -7814304 + ID_B1 SINE B4 150 211 -13 4 1689 387 285 16 0 chr5 144723058 144723181 -7814078 - L1MD3 LINE L1 -32 7963 7839 4 1689 255 283 153 64 chr5 144723638 144723887 -7813372 - B4 SINE B4 -19 273 3 4 1689 449 226 25 42 chr5 144723967 144724087 -7813172 - L1MD3 LINE L1 -553 7442 7325 4 1689 191 188 0 20 chr5 144724258 144724307 -7812952 + (TG)n Simple_repeat Simple_repeat 1 48 0 4 1689 639 281 109 84 chr5 144724328 144724585 -7812674 - B4A SINE B4 0 292 31 4 1689 198 0 0 0 chr5 144724585 144724607 -7812652 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4 1689 639 281 109 84 chr5 144724607 144724633 -7812626 - B4A SINE B4 -262 30 2 4 1689 288 0 0 0 chr5 144725109 144725141 -7812118 + (TG)n Simple_repeat Simple_repeat 2 33 0 4 1689 212 305 0 0 chr5 144725141 144725192 -7812067 - RSINE1 SINE B4 -111 54 4 4 1689 990 232 10 10 chr5 144725220 144725429 -7811830 + B3 SINE B2 3 211 -5 4 1689 498 261 36 9 chr5 144725571 144725683 -7811576 + PB1D10 SINE Alu 1 115 -2 4 1689 1236 48 0 7 chr5 144725735 144725883 -7811376 - B1_Mus1 SINE Alu 0 148 2 4 1689 25 31 0 0 chr5 144725885 144725917 -7811342 + AT_rich Low_complexity Low_complexity 1 32 0 4 1689 2878 54 84 3 chr5 144725925 144726295 -7810964 + MTB LTR MaLR 1 400 0 4 1689 198 0 0 0 chr5 144726320 144726342 -7810917 + (TG)n Simple_repeat Simple_repeat 1 22 0 4 1689 216 0 0 0 chr5 144726342 144726365 -7810894 + (GA)n Simple_repeat Simple_repeat 1 24 0 4 1689 438 238 141 16 chr5 144726835 144726963 -7810296 - B3A SINE B2 -5 211 68 4 1689 533 300 25 18 chr5 144726958 144727121 -7810138 - B4A SINE B4 -126 166 3 4 1689 286 221 198 0 chr5 144727130 144727216 -7810043 - PB1D7 SINE Alu -2 118 16 4 1689 1028 247 76 0 chr5 144727595 144727858 -7809401 + B4A SINE B4 1 283 -9 4 1689 435 157 155 10 chr5 144728509 144728612 -7808647 - PB1D9 SINE Alu -1 119 2 4 1689 358 172 0 0 chr5 144729941 144729999 -7807260 + B3A SINE B2 2 59 -139 4 1689 460 188 155 12 chr5 144729985 144730085 -7807174 + B1_Mur2 SINE Alu 38 149 0 4 1689 352 298 72 27 chr5 144730085 144730347 -7806912 + L1M4c LINE L1 701 974 -5410 4 1689 557 217 78 0 chr5 144730354 144730469 -7806790 + RSINE1 SINE B4 2 125 -40 4 1689 382 308 105 17 chr5 144730475 144730647 -7806612 + L1M4c LINE L1 942 1128 -5256 4 1689 21 0 0 0 chr5 144730782 144730803 -7806456 + AT_rich Low_complexity Low_complexity 1 21 0 4 1689 1400 81 0 11 chr5 144730819 144731006 -7806253 - B2_Mm2 SINE B2 -9 186 2 4 1689 304 275 70 28 chr5 144731120 144731262 -7805997 + L1M4c LINE L1 1479 1626 -4758 4 1689 1216 56 0 0 chr5 144731451 144731594 -7805665 + B1_Mus2 SINE Alu 1 143 -4 4 1689 191 36 0 35 chr5 144731595 144731624 -7805635 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 4 1689 1181 68 7 0 chr5 144731666 144731813 -7805446 + B1_Mus1 SINE Alu 1 148 0 4 1689 336 297 108 66 chr5 144731905 144732071 -7805188 - MTEb LTR MaLR 0 379 207 4 1689 24 53 0 0 chr5 144732262 144732300 -7804959 + AT_rich Low_complexity Low_complexity 1 38 0 4 1689 700 159 0 0 chr5 144732301 144732408 -7804851 - B1_Mur4 SINE Alu -41 109 3 4 1689 358 236 17 117 chr5 144732305 144732425 -7804834 - MT2B LTR ERVL -344 257 150 4 1689 557 181 0 50 chr5 144732422 144732521 -7804738 + B1_Mur1 SINE Alu 43 136 -13 4 1689 230 0 0 32 chr5 144732521 144732552 -7804707 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4 1689 224 233 0 0 chr5 144732556 144732599 -7804660 - B3 SINE B2 -173 43 1 4 1689 259 302 50 0 chr5 144733116 144733235 -7804024 + L1M4c LINE L1 1757 1881 -4582 4 1689 348 185 119 36 chr5 144733421 144733505 -7803754 + RSINE1 SINE B4 1 91 -74 4 1689 2764 245 60 53 chr5 144733687 144734751 -7802508 - RMER12B LTR ERVK 0 1572 515 4 1689 672 145 0 0 chr5 144734775 144734892 -7802367 + (TCCC)n Simple_repeat Simple_repeat 2 118 0 4 1689 2468 221 24 49 chr5 144734894 144735445 -7801814 - RMER12B LTR ERVK -867 537 1 4 1689 924 158 0 0 chr5 144735469 144735608 -7801651 + B1_Mur4 SINE Alu 1 139 -11 4 1689 1994 88 62 36 chr5 144735608 144735650 -7801609 - ORR1A2 LTR MaLR -12 315 282 5 1689 299 0 73 0 chr5 144735650 144735691 -7801568 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 5 1689 1180 44 0 0 chr5 144735691 144735828 -7801431 - B1_Mus1 SINE Alu -10 138 2 5 1689 1994 88 62 36 chr5 144735828 144736091 -7801168 - ORR1A2 LTR MaLR -46 281 2 5 1689 216 0 0 0 chr5 144736131 144736155 -7801104 + (A)n Simple_repeat Simple_repeat 1 24 0 5 1689 2974 145 41 101 chr5 144736218 144736930 -7800329 + RMER1A Other Other 335 1003 -27 5 1689 438 211 158 66 chr5 144736939 144737091 -7800168 + B3A SINE B2 27 192 -6 5 1689 587 236 95 18 chr5 144737440 144737608 -7799651 + ID_B1 SINE B4 40 220 -4 5 1689 305 327 92 29 chr5 144737613 144737786 -7799473 + L1MB5 LINE L1 5901 6084 -90 5 1689 185 374 84 0 chr5 144738261 144738344 -7798915 - MIR SINE MIR -147 115 26 5 1689 188 324 65 72 chr5 144738513 144738789 -7798470 - L2 LINE L2 -808 2611 2338 5 1689 485 234 80 0 chr5 144738830 144738967 -7798292 + RSINE1 SINE B4 18 165 0 5 1689 793 152 0 23 chr5 144738969 144739236 -7798023 + (CA)n Simple_repeat Simple_repeat 1 260 0 5 1689 413 316 0 0 chr5 144739367 144739465 -7797794 - ID_B1 SINE B4 -32 192 95 5 1689 954 209 81 10 chr5 144739481 144739679 -7797580 - B3 SINE B2 0 216 5 5 1689 212 87 0 61 chr5 144739687 144739736 -7797523 + (T)n Simple_repeat Simple_repeat 1 46 0 5 1689 1239 55 0 0 chr5 144739736 144739882 -7797377 - B1_Mus2 SINE Alu 0 147 2 5 1689 543 233 184 0 chr5 144739895 144740058 -7797201 - B3A SINE B2 -5 193 1 5 1689 892 163 0 0 chr5 144740247 144740388 -7796871 + B1_Mur2 SINE Alu 9 149 0 5 1689 257 197 101 43 chr5 144740427 144740496 -7796763 + B1F SINE Alu 77 149 0 5 1689 607 167 78 0 chr5 144741098 144741200 -7796059 - B1_Mur1 SINE Alu -25 124 15 5 1689 894 214 56 19 chr5 144741221 144741435 -7795824 - ID_B1 SINE B4 -2 222 1 5 1689 535 199 0 26 chr5 144741587 144741742 -7795517 + C-rich Low_complexity Low_complexity 6 156 0 5 1689 453 76 0 0 chr5 144742258 144742324 -7794935 + (TG)n Simple_repeat Simple_repeat 2 67 0 5 1689 369 186 174 0 chr5 144742324 144742410 -7794849 - RSINE1 SINE B4 -41 124 24 5 1689 1207 75 0 0 chr5 144742734 144742881 -7794378 - B1_Mus1 SINE Alu 0 148 2 5 1689 538 262 8 16 chr5 144743083 144743211 -7794048 + ID_B1 SINE B4 88 214 -10 5 1689 441 0 0 0 chr5 144743211 144743260 -7793999 + (CA)n Simple_repeat Simple_repeat 2 50 0 5 1689 832 144 153 5 chr5 144743854 144744050 -7793209 - RMER17C LTR ERVK 0 410 186 5 1689 814 157 90 62 chr5 144744038 144744215 -7793044 + B3 SINE B2 28 209 -7 5 1689 346 254 212 0 chr5 144744256 144744374 -7792885 + B3A SINE B2 25 167 -31 5 1689 370 217 189 83 chr5 144744377 144744401 -7792858 + ID_B1 SINE B4 65 157 -135 5 1689 601 185 8 25 chr5 144744401 144744523 -7792736 + PB1D7 SINE Alu 1 120 0 5 1689 370 217 189 83 chr5 144744523 144744544 -7792715 + ID_B1 SINE B4 158 248 -44 5 1689 328 215 50 12 chr5 144745154 144745234 -7792025 + ID2 SINE ID 1 83 0 5 1689 913 217 84 46 chr5 144745256 144745618 -7791641 - RMER17B LTR ERVK 0 410 1 5 1689 370 241 25 0 chr5 144745908 144745987 -7791272 + B3A SINE B2 2 82 -116 5 1689 212 292 33 22 chr5 144745987 144745999 -7791260 + ID_B1 SINE B4 2 93 -131 5 1689 838 152 26 46 chr5 144746081 144746233 -7791026 - B1_Mur1 SINE Alu 0 149 1 5 1689 473 285 86 91 chr5 144746233 144746306 -7790953 - B4 SINE B4 -215 77 6 5 1689 355 202 274 0 chr5 144746743 144746827 -7790432 + PB1D9 SINE Alu 1 107 -13 5 1689 798 238 0 7 chr5 144746846 144746998 -7790261 + B3A SINE B2 6 156 -42 5 1689 546 16 0 0 chr5 144747000 144747063 -7790196 + (CA)n Simple_repeat Simple_repeat 1 63 0 5 1689 309 233 0 0 chr5 144747063 144747123 -7790136 + B4A SINE B4 228 287 -5 5 1689 1715 128 14 126 chr5 144747988 144748345 -7788914 - ORR1A4 LTR MaLR -8 321 5 5 1689 467 272 12 114 chr5 144748345 144748433 -7788826 - B3A SINE B2 -3 195 119 5 1689 468 179 337 23 chr5 144748433 144748605 -7788654 + URR1A DNA MER1_type 1 226 0 5 1689 467 272 12 114 chr5 144748605 144748682 -7788577 - B3A SINE B2 -80 118 47 5 1689 408 225 0 0 chr5 144749549 144749629 -7787630 - ID4 SINE ID -2 81 2 5 1689 440 287 88 0 chr5 144749698 144749834 -7787425 + B1F2 SINE Alu 2 149 0 5 1689 794 241 98 10 chr5 144750363 144750556 -7786703 + B3 SINE B2 1 210 -6 5 1689 228 318 81 23 chr5 144750732 144750819 -7786440 - PB1D10 SINE Alu -5 112 21 5 1689 357 242 87 11 chr5 144750847 144750939 -7786320 - B3A SINE B2 -99 99 1 5 1689 525 276 51 0 chr5 144750956 144751112 -7786147 - B3 SINE B2 -3 213 50 5 1689 645 224 98 15 chr5 144751277 144751433 -7785826 - ID_B1 SINE B4 -45 247 78 5 1689 1370 69 0 0 chr5 144751721 144751894 -7785365 + B2_Mm2 SINE B2 1 173 -22 5 1689 384 102 326 0 chr5 144751910 144752019 -7785240 + B2_Mm2 SINE B2 46 195 0 5 1689 405 270 44 18 chr5 144752139 144752252 -7785007 + PB1D10 SINE Alu 1 116 -1 5 1689 471 281 7 36 chr5 144752656 144752796 -7784463 + RSINE1 SINE B4 1 136 -29 5 1689 925 144 29 0 chr5 144754461 144754600 -7782659 + B1_Mur4 SINE Alu 1 143 -7 5 1689 500 252 97 22 chr5 144754808 144754942 -7782317 + ID_B1 SINE B4 79 222 -2 5 1689 390 230 288 16 chr5 144754949 144755116 -7782143 + B3A SINE B2 1 203 -13 5 1689 307 307 127 42 chr5 144755163 144755588 -7781671 + L1M4 LINE L1 3004 3464 -2682 5 1689 476 239 54 48 chr5 144755633 144755763 -7781496 + B1_Mur2 SINE Alu 14 149 0 5 1689 249 233 152 6 chr5 144755770 144755936 -7781323 + L1M4 LINE L1 3496 3685 -2461 5 1689 218 310 33 54 chr5 144756199 144756291 -7780968 - B3A SINE B2 -16 182 93 5 1689 333 318 83 119 chr5 144756256 144756474 -7780785 - B4A SINE B4 -81 211 2 5 1689 180 375 22 11 chr5 144756509 144756598 -7780661 - L4 LINE RTE -1745 284 195 5 1689 328 243 326 17 chr5 144756636 144756720 -7780539 + MTB_Mm LTR MaLR 130 225 -182 5 1689 432 0 0 0 chr5 144756720 144756768 -7780491 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1689 328 226 93 29 chr5 144756768 144756878 -7780381 + MTB_Mm LTR MaLR 226 391 -28 5 1689 426 75 0 5 chr5 144756907 144756971 -7780288 - B2_Mm2 SINE B2 -107 109 48 5 1689 271 195 1154 29 chr5 144756982 144756995 -7780264 + MTB_Mm LTR MaLR 371 377 -44 5 1689 1354 73 23 0 chr5 144756995 144757172 -7780087 - B2_Mm2 SINE B2 -14 181 1 5 1689 272 120 0 1 chr5 144757172 144757215 -7780044 + MTB_Mm LTR MaLR 376 419 -2 5 1689 324 0 0 0 chr5 144757225 144757261 -7779998 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1689 796 127 94 16 chr5 144757334 144757462 -7779797 - B1_Mur1 SINE Alu -7 142 5 5 1689 290 310 35 0 chr5 144757539 144757551 -7779708 - B1F SINE Alu -51 98 9 5 1689 297 280 13 0 chr5 144757551 144757626 -7779633 - ID_B1 SINE B4 -59 165 90 5 1689 863 229 57 11 chr5 144757709 144757886 -7779373 - B3 SINE B2 -30 186 2 5 1689 216 171 0 0 chr5 144758552 144758587 -7778672 + GA-rich Low_complexity Low_complexity 3 37 0 5 1689 242 304 18 0 chr5 144758596 144758652 -7778607 + PB1 SINE Alu 3 59 -68 5 1689 299 283 95 45 chr5 144759658 144759858 -7777401 + Lx8 LINE L1 6832 7041 -432 5 1689 949 212 18 49 chr5 144760329 144760552 -7776707 + B3 SINE B2 1 216 0 5 1689 268 286 16 0 chr5 144761450 144761513 -7775746 - ID_B1 SINE B4 -133 91 28 5 1689 1222 68 0 0 chr5 144761684 144761830 -7775429 + B1_Mus2 SINE Alu 2 147 0 5 1689 243 88 0 0 chr5 144761830 144761864 -7775395 + (A)n Simple_repeat Simple_repeat 1 34 0 5 1689 497 228 45 65 chr5 144762428 144762583 -7774676 + ID_B1 SINE B4 2 153 -71 5 1689 387 280 21 11 chr5 144762755 144762849 -7774410 + RSINE1 SINE B4 1 95 -70 5 1689 495 87 0 0 chr5 144762857 144762926 -7774333 + (CA)n Simple_repeat Simple_repeat 1 69 0 5 1689 657 204 127 24 chr5 144763480 144763550 -7773709 + B4A SINE B4 1 87 -205 5 1689 264 267 8 79 chr5 144763550 144763676 -7773583 + PB1D10 SINE Alu 1 117 0 5 1689 327 266 51 41 chr5 144763933 144764031 -7773228 + PB1D10 SINE Alu 19 117 0 5 1689 207 195 24 0 chr5 144764282 144764323 -7772936 + CT-rich Low_complexity Low_complexity 5 46 0 5 1689 357 24 0 0 chr5 144764347 144764389 -7772870 + (TG)n Simple_repeat Simple_repeat 1 42 0 5 1689 347 264 0 32 chr5 144764541 144764635 -7772624 - B4 SINE B4 -192 100 10 5 1689 1344 84 10 35 chr5 144765286 144765484 -7771775 - B2_Mm1t SINE B2 0 193 1 5 1689 1177 48 0 39 chr5 144765651 144765804 -7771455 + B1_Mus2 SINE Alu 1 147 0 5 1689 663 287 91 8 chr5 144765826 144766079 -7771180 + B4A SINE B4 11 284 -8 5 1689 1555 196 39 75 chr5 144766121 144766508 -7770751 + ORR1D1 LTR MaLR 2 374 0 5 1689 1224 162 29 0 chr5 144766686 144766890 -7770369 - ORR1C1 LTR MaLR 0 378 169 5 1689 680 178 92 15 chr5 144766918 144767049 -7770210 - B1_Mur4 SINE Alu 0 150 10 5 1689 378 174 47 75 chr5 144767023 144767129 -7770130 - ORR1C1 LTR MaLR -215 163 61 5 1689 1225 55 0 0 chr5 144767165 144767310 -7769949 - B1_Mus2 SINE Alu -1 146 2 5 1689 231 59 118 0 chr5 144767324 144767358 -7769901 - ORR1A2 LTR MaLR 0 326 289 5 1689 219 186 0 0 chr5 144767359 144767422 -7769837 + T-rich Low_complexity Low_complexity 8 70 0 5 1689 1422 68 10 5 chr5 144767422 144767614 -7769645 - B2_Mm1t SINE B2 0 193 1 5 1689 188 0 74 0 chr5 144767624 144767651 -7769608 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5 1689 1075 95 0 0 chr5 144767651 144767788 -7769471 - B1_Mus1 SINE Alu -10 138 2 5 1689 1296 27 0 0 chr5 144767810 144767957 -7769302 - B1_Mus2 SINE Alu 0 147 1 6 1689 1279 94 6 0 chr5 144767958 144768128 -7769131 - ORR1A2 LTR MaLR -42 285 115 5 1689 3919 158 97 1 chr5 144768118 144768914 -7768345 - ORR1A2-int LTR MaLR -1091 872 1 5 1689 266 206 25 76 chr5 144768914 144768966 -7768293 - ORR1A2 LTR MaLR -336 48 1 5 1689 408 269 2 14 chr5 144769029 144769115 -7768144 + B1F SINE Alu 1 80 -69 6 1689 288 0 0 0 chr5 144769115 144769147 -7768112 + (TG)n Simple_repeat Simple_repeat 2 33 0 6 1689 289 370 44 38 chr5 144769147 144769225 -7768034 + FAM SINE Alu 223 300 -11 6 1689 21 36 0 0 chr5 144769391 144769419 -7767840 + AT_rich Low_complexity Low_complexity 1 28 0 6 1689 613 239 75 16 chr5 144769440 144769627 -7767632 + B3A SINE B2 1 198 0 6 1689 599 167 120 62 chr5 144769644 144769825 -7767434 + B3 SINE B2 1 174 -21 6 1689 393 186 78 58 chr5 144770388 144770491 -7766768 - PB1 SINE Alu 0 127 23 6 1689 273 226 32 0 chr5 144770498 144770560 -7766699 - B3A SINE B2 -134 64 1 6 1689 26 0 0 0 chr5 144770562 144770588 -7766671 + AT_rich Low_complexity Low_complexity 1 26 0 6 1689 512 241 35 0 chr5 144770675 144770791 -7766468 + PB1D7 SINE Alu 1 120 0 6 1689 1246 20 14 7 chr5 144770873 144771021 -7766238 - B1_Mur4 SINE Alu 0 150 2 6 1689 567 235 54 39 chr5 144771084 144771288 -7765971 + Lx9 LINE L1 6957 7163 -481 6 1689 243 88 0 0 chr5 144771288 144771322 -7765937 + (GGA)n Simple_repeat Simple_repeat 3 36 0 6 1689 1604 231 90 18 chr5 144771322 144771811 -7765448 + Lx9 LINE L1 7120 7643 -1 6 1689 272 250 109 0 chr5 144772478 144772542 -7764717 + ID4_ SINE ID 2 72 -11 6 1689 593 182 107 0 chr5 144772569 144772690 -7764569 + B1_Mus1 SINE Alu 15 148 0 6 1689 399 241 41 57 chr5 144772703 144772826 -7764433 + RSINE1 SINE B4 12 132 -33 6 1689 29 47 0 0 chr5 144772839 144772882 -7764377 + AT_rich Low_complexity Low_complexity 1 43 0 6 1689 443 209 0 42 chr5 144772921 144773016 -7764243 + PB1D9 SINE Alu 29 119 -1 6 1689 567 278 83 31 chr5 144772988 144773181 -7764078 + B4 SINE B4 58 260 -32 6 1689 183 42 0 0 chr5 144773370 144773394 -7763865 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 6 1689 932 174 0 0 chr5 144773395 144773539 -7763720 - B1_Mur4 SINE Alu -5 145 2 6 1689 957 130 0 33 chr5 144774103 144774254 -7763005 + B1_Mus2 SINE Alu 2 147 0 6 1689 1388 67 0 6 chr5 144774501 144774521 -7762738 - B2_Mm1t SINE B2 -13 180 161 6 1689 515 53 0 13 chr5 144774521 144774597 -7762662 + (TTTA)n Simple_repeat Simple_repeat 3 77 0 6 1689 1388 67 0 6 chr5 144774597 144774757 -7762502 - B2_Mm1t SINE B2 -33 160 1 6 1689 835 48 29 0 chr5 144774866 144774970 -7762289 + U6 snRNA snRNA 1 107 0 6 1689 450 280 32 47 chr5 144775027 144775263 -7761996 + Lx7 LINE L1 5538 5806 -1890 6 1689 21 71 0 0 chr5 144775655 144775697 -7761562 + GC_rich Low_complexity Low_complexity 1 42 0 6 1689 523 180 0 20 chr5 144775976 144775989 -7761270 - PB1D9 SINE Alu -2 118 107 6 1689 252 0 0 0 chr5 144775989 144776017 -7761242 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 6 1689 524 156 0 1 chr5 144776017 144776105 -7761154 - B1_Mur2 SINE Alu -14 106 19 6 1689 277 307 34 0 chr5 144776041 144776129 -7761130 - B4A SINE B4 -125 167 77 6 1689 343 52 0 33 chr5 144776181 144776241 -7761018 + (TTG)n Simple_repeat Simple_repeat 2 59 0 6 1689 327 258 0 29 chr5 144776275 144776343 -7760916 - RSINE1 SINE B4 -22 143 78 6 1689 324 154 192 0 chr5 144776343 144776421 -7760838 + ID_B1 SINE B4 81 173 -51 6 1689 732 233 106 0 chr5 144776493 144776682 -7760577 + B3 SINE B2 2 210 -6 6 1689 319 286 39 0 chr5 144777065 144777142 -7760117 + PB1D7 SINE Alu 34 113 -7 6 1689 477 291 51 0 chr5 144777172 144777289 -7759970 - ID_B1 SINE B4 -16 208 86 6 1689 258 224 0 121 chr5 144777764 144777830 -7759429 - RSINE1 SINE B4 0 165 108 6 1689 216 0 0 0 chr5 144778107 144778131 -7759128 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 6 1689 1366 62 11 6 chr5 144778219 144778396 -7758863 + B2_Mm1t SINE B2 2 179 -14 6 1689 840 263 45 0 chr5 144778417 144778615 -7758644 + B4A SINE B4 1 207 -85 6 1689 279 79 0 0 chr5 144778639 144778677 -7758582 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1689 360 0 0 0 chr5 144779141 144779181 -7758078 + (TA)n Simple_repeat Simple_repeat 2 41 0 6 1689 951 41 0 16 chr5 144779199 144779323 -7757936 - B1_Mus2 SINE Alu 0 147 26 6 1689 480 278 8 23 chr5 144779374 144779503 -7757756 - RSINE1 SINE B4 -21 144 18 6 1689 513 312 40 0 chr5 144779501 144779626 -7757633 - ID_B1 SINE B4 -13 211 82 6 1689 432 252 12 93 chr5 144779921 144780083 -7757176 + B1_Mur1 SINE Alu 1 149 0 6 1689 1505 249 44 60 chr5 144780086 144780414 -7756845 + MTE2b LTR MaLR 1 339 -40 6 1689 1319 99 21 0 chr5 144780414 144780605 -7756654 - B2_Mm2 SINE B2 0 195 1 6 1689 1505 249 44 60 chr5 144780605 144780661 -7756598 + MTE2b LTR MaLR 340 379 0 6 1689 361 315 9 0 chr5 144781184 144781295 -7755964 - PB1D10 SINE Alu -5 112 1 6 1689 600 199 28 56 chr5 144781312 144781456 -7755803 - ID_B1 SINE B4 -5 219 80 6 1689 219 225 0 0 chr5 144781468 144781508 -7755751 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1689 989 251 59 39 chr5 144781510 144781796 -7755463 - B4A SINE B4 0 292 1 6 1689 345 102 0 0 chr5 144782081 144782140 -7755119 + (TG)n Simple_repeat Simple_repeat 1 59 0 6 1689 892 232 66 62 chr5 144782164 144782453 -7754806 - B4A SINE B4 -1 291 2 6 1689 260 237 147 110 chr5 144782466 144782575 -7754684 - PB1D10 SINE Alu -36 113 1 6 1689 590 239 28 14 chr5 144782692 144782836 -7754423 + ID_B1 SINE B4 79 224 0 6 1689 1258 27 0 7 chr5 144782844 144782991 -7754268 + B1_Mus1 SINE Alu 2 147 -1 6 1689 228 143 0 0 chr5 144783214 144783256 -7754003 + (TGG)n Simple_repeat Simple_repeat 3 44 0 6 1689 216 0 0 0 chr5 144783253 144783277 -7753982 + (TG)n Simple_repeat Simple_repeat 2 25 0 6 1689 663 259 15 70 chr5 144783290 144783489 -7753770 - B4A SINE B4 0 292 105 6 1689 486 275 18 0 chr5 144783810 144783919 -7753340 - B4A SINE B4 -179 113 3 6 1689 306 0 0 0 chr5 144784138 144784172 -7753087 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1689 549 208 66 0 chr5 144784172 144784278 -7752981 - B1F1 SINE Alu -11 138 26 6 1689 628 221 55 8 chr5 144784321 144784449 -7752810 - RSINE1 SINE B4 -29 136 3 6 1689 269 219 141 0 chr5 144784481 144784545 -7752714 - ID SINE ID -148 76 4 6 1689 212 209 21 21 chr5 144784856 144784949 -7752310 + CT-rich Low_complexity Low_complexity 4 96 0 6 1689 183 80 0 0 chr5 144785239 144785264 -7751995 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 6 1689 229 129 0 0 chr5 144785776 144785807 -7751452 - B1F1 SINE Alu -37 112 82 6 1689 213 326 0 0 chr5 144785840 144785889 -7751370 - BC1_Mm scRNA scRNA -69 83 35 6 1689 655 285 57 21 chr5 144786095 144786305 -7750954 - ID_B1 SINE B4 -19 273 61 6 1689 253 269 86 77 chr5 144786290 144786407 -7750852 - ID_B1 SINE B4 -105 119 2 6 1689 569 246 6 0 chr5 144786874 144787045 -7750214 + GA-rich Low_complexity Low_complexity 3 174 0 6 1689 381 258 32 0 chr5 144787046 144787139 -7750120 + ID_B1 SINE B4 123 218 -6 6 1689 338 326 126 5 chr5 144787970 144788161 -7749098 - ID_B1 SINE B4 -10 214 1 6 1689 279 0 0 0 chr5 144788279 144788310 -7748949 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6 1689 1364 50 60 6 chr5 144788348 144788530 -7748729 + B2_Mm2 SINE B2 3 194 -1 6 1689 778 152 96 0 chr5 144788530 144788654 -7748605 - B1_Mur4 SINE Alu -13 137 1 6 1689 215 200 0 39 chr5 144788677 144788729 -7748530 + (TATG)n Simple_repeat Simple_repeat 1 50 0 6 1689 1147 49 7 0 chr5 144788812 144788954 -7748305 - B2_Mm2 SINE B2 -50 145 3 6 1689 313 231 25 13 chr5 144788954 144789027 -7748232 - B4A SINE B4 -137 155 82 6 1689 1808 72 0 39 chr5 144789063 144789323 -7747936 - L1Md_F2 LINE L1 0 6582 6333 6 1689 848 169 77 87 chr5 144789579 144789774 -7747485 - B3 SINE B2 -2 193 1 6 1689 306 283 152 0 chr5 144789929 144790021 -7747238 + PB1D10 SINE Alu 12 117 0 6 1689 335 208 83 0 chr5 144790040 144790112 -7747147 + B4 SINE B4 16 93 -199 6 1689 1500 88 0 5 chr5 144790112 144790307 -7746952 + B2_Mm2 SINE B2 2 195 0 6 1689 333 68 0 0 chr5 144790307 144790351 -7746908 + (GA)n Simple_repeat Simple_repeat 2 45 0 6 1689 1669 26 5 0 chr5 144790360 144790552 -7746707 + B2_Mm1t SINE B2 1 193 0 6 1689 770 228 83 21 chr5 144790552 144790745 -7746514 + B4 SINE B4 86 290 -2 6 1689 294 120 20 0 chr5 144790871 144790921 -7746338 + B3A SINE B2 1 51 -147 6 1689 369 0 0 0 chr5 144792500 144792541 -7744718 + (TC)n Simple_repeat Simple_repeat 1 41 0 6 1689 1380 0 0 32 chr5 144792541 144792726 -7744533 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1689 1084 66 0 7 chr5 144793103 144793241 -7744018 - B1_Mus1 SINE Alu -1 147 11 6 1689 472 228 7 124 chr5 144793138 144793283 -7743976 - MT2B LTR ERVL -337 264 137 6 1689 652 203 6 63 chr5 144793241 144793261 -7743998 - ID_B1 SINE B4 -1 223 75 6 1689 1068 204 5 62 chr5 144793869 144794078 -7743181 - B3 SINE B2 -14 202 6 6 1689 275 231 167 0 chr5 144794083 144794161 -7743098 + MTEa LTR MaLR 2 92 -287 6 1689 491 265 105 23 chr5 144794312 144794560 -7742699 + MTEa LTR MaLR 92 377 -2 6 1689 339 221 0 0 chr5 144794591 144794677 -7742582 + T-rich Low_complexity Low_complexity 1 86 0 6 1689 226 330 120 17 chr5 144794738 144794855 -7742404 + L2 LINE L2 1633 1761 -1658 6 1689 342 246 69 48 chr5 144794857 144795002 -7742257 + L1M5 LINE L1 5363 5510 -669 6 1689 1656 57 37 7 chr5 144795130 144795434 -7741825 - ZP3AR Satellite Satellite -21 313 1 6 1689 252 314 142 38 chr5 144795380 144795486 -7741773 - PB1D10 SINE Alu 0 117 1 6 1689 483 321 43 89 chr5 144796215 144796309 -7740950 + B4 SINE B4 2 218 -74 7 1689 808 128 15 8 chr5 144796309 144796436 -7740823 + B1_Mus2 SINE Alu 11 139 -8 7 1689 270 0 0 0 chr5 144796436 144796466 -7740793 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 7 1689 483 260 114 42 chr5 144796472 144796557 -7740702 + B4 SINE B4 219 291 -1 7 1689 416 211 39 87 chr5 144796602 144796706 -7740553 + B4A SINE B4 1 99 -193 7 1689 380 297 0 10 chr5 144796745 144796847 -7740412 + B4A SINE B4 184 284 -8 7 1689 288 0 0 0 chr5 144796858 144796890 -7740369 + (TG)n Simple_repeat Simple_repeat 1 32 0 7 1689 573 238 84 8 chr5 144797008 144797139 -7740120 - ID_B1 SINE B4 -2 222 82 7 1689 1543 58 5 0 chr5 144797251 144797441 -7739818 + B2_Mm1a SINE B2 3 193 0 7 1689 317 185 15 0 chr5 144798142 144798207 -7739052 + ID SINE ID 3 68 -156 7 1689 453 200 50 0 chr5 144798224 144798304 -7738955 + ID_B1 SINE B4 124 207 -17 7 1689 390 129 0 0 chr5 144798306 144798368 -7738891 + (ATGGTG)n Simple_repeat Simple_repeat 4 65 0 7 1689 1140 63 28 0 chr5 144798790 144798933 -7738326 + B1_Mus1 SINE Alu 2 148 0 7 1689 209 57 29 0 chr5 144798934 144798969 -7738290 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 7 1689 268 305 12 0 chr5 144799057 144799139 -7738120 - ID4_ SINE ID 0 83 1 7 1689 678 132 61 0 chr5 144799139 144799253 -7738006 - ZP3AR Satellite Satellite -64 148 28 7 1689 457 290 0 0 chr5 144799506 144799606 -7737653 + ID_B1 SINE B4 122 221 -3 7 1689 236 77 0 25 chr5 144799867 144799907 -7737352 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7 1689 2148 196 12 12 chr5 144799973 144800377 -7736882 - MTD LTR MaLR -15 404 1 7 1689 660 195 9 0 chr5 144800652 144800765 -7736494 + B3A SINE B2 1 114 -84 7 1689 333 281 86 29 chr5 144800765 144800791 -7736468 + B4A SINE B4 1 147 -145 7 1689 1898 163 56 6 chr5 144800866 144801205 -7736054 + ORR1B1 LTR MaLR 39 394 0 7 1689 223 261 0 0 chr5 144801205 144801251 -7736008 - B1_Mur1 SINE Alu -30 119 74 7 1689 312 27 0 0 chr5 144801275 144801312 -7735947 + (TC)n Simple_repeat Simple_repeat 2 38 0 7 1689 1235 61 0 0 chr5 144801371 144801518 -7735741 - B1_Mm SINE Alu 0 147 1 7 1689 453 258 23 24 chr5 144801522 144801652 -7735607 + PB1 SINE Alu 1 126 -1 7 1689 811 193 112 11 chr5 144802089 144802267 -7734992 + B3A SINE B2 1 196 -2 7 1689 739 289 49 31 chr5 144802341 144802627 -7734632 + B4A SINE B4 2 292 0 7 1689 451 96 24 0 chr5 144802653 144802736 -7734523 + (CA)n Simple_repeat Simple_repeat 2 86 0 7 1689 357 281 0 9 chr5 144802949 144802966 -7734293 + (TG)n Simple_repeat Simple_repeat 2 18 0 7 1689 396 40 0 0 chr5 144802966 144803016 -7734243 + (GA)n Simple_repeat Simple_repeat 1 50 0 7 1689 357 281 0 9 chr5 144803016 144803113 -7734146 + (TG)n Simple_repeat Simple_repeat 1 97 0 7 1689 474 257 38 0 chr5 144803113 144803218 -7734041 - B4A SINE B4 0 292 184 7 1689 283 259 11 34 chr5 144803245 144803333 -7733926 + GA-rich Low_complexity Low_complexity 2 87 0 7 1689 444 301 40 8 chr5 144803338 144803462 -7733797 - ORR1E LTR MaLR -231 128 1 7 1689 207 0 0 0 chr5 144803505 144803528 -7733731 + (TG)n Simple_repeat Simple_repeat 1 23 0 7 1689 787 236 32 0 chr5 144803535 144803692 -7733567 - B3A SINE B2 -36 162 1 7 1689 375 274 21 0 chr5 144803692 144803785 -7733474 - B4 SINE B4 -197 95 1 7 1689 681 199 44 25 chr5 144803816 144803976 -7733283 - RSINE1 SINE B4 0 165 3 7 1689 753 136 28 0 chr5 144804400 144804550 -7732709 - B2_Mm2 SINE B2 -2 191 28 7 1689 210 37 0 0 chr5 144804553 144804580 -7732679 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 7 1689 1164 49 28 0 chr5 144804580 144804722 -7732537 - B1_Mus1 SINE Alu -2 146 1 7 1689 537 299 16 0 chr5 144804758 144804885 -7732374 - RSINE1 SINE B4 -31 134 6 7 1689 201 147 0 0 chr5 144804891 144804925 -7732334 + (TTG)n Simple_repeat Simple_repeat 3 36 0 7 1689 471 222 9 6 chr5 144805088 144805198 -7732061 - B4A SINE B4 -118 106 1 7 1689 414 0 0 0 chr5 144805274 144805320 -7731939 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1689 695 242 240 10 chr5 144805323 144805515 -7731744 - B4 SINE B4 -20 272 37 7 1689 324 0 0 0 chr5 144805550 144805586 -7731673 + (CA)n Simple_repeat Simple_repeat 1 36 0 7 1689 1193 68 0 14 chr5 144805602 144805743 -7731516 + B1_Mus1 SINE Alu 3 142 -6 7 1689 1047 86 0 0 chr5 144805743 144805895 -7731364 + (TAGA)n Simple_repeat Simple_repeat 1 152 0 7 1689 192 77 0 0 chr5 144806297 144806323 -7730936 + (TTA)n Simple_repeat Simple_repeat 2 27 0 7 1689 198 0 0 0 chr5 144806331 144806353 -7730906 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 7 1689 1000 136 7 0 chr5 144806357 144806504 -7730755 - B1_Mus1 SINE Alu 0 148 1 7 1689 598 290 108 0 chr5 144806550 144806726 -7730533 - ID_B1 SINE B4 -29 195 1 7 1689 333 186 0 0 chr5 144807084 144807154 -7730105 + (TG)n Simple_repeat Simple_repeat 2 71 0 7 1689 522 263 146 10 chr5 144807214 144807419 -7729840 + MLT2B2 LTR ERVL 217 450 -65 7 1689 619 302 62 10 chr5 144807422 144807616 -7729643 + B4A SINE B4 2 205 -87 7 1689 494 277 27 58 chr5 144807595 144807783 -7729476 - B4A SINE B4 -102 190 9 7 1689 29 0 0 0 chr5 144807792 144807821 -7729438 + AT_rich Low_complexity Low_complexity 1 29 0 7 1689 254 263 9 174 chr5 144807840 144807955 -7729304 - RSINE1 SINE B4 -68 97 2 7 1689 182 62 0 30 chr5 144808013 144808046 -7729213 + (CCCCCA)n Simple_repeat Simple_repeat 2 33 0 7 1689 246 156 0 0 chr5 144808319 144808364 -7728895 + (CGTG)n Simple_repeat Simple_repeat 1 45 0 7 1689 568 248 22 29 chr5 144808545 144808682 -7728577 + B1F SINE Alu 1 136 -13 7 1689 242 227 136 0 chr5 144808710 144808776 -7728483 + ID_B1 SINE B4 149 223 -1 7 1689 275 160 40 0 chr5 144808820 144808870 -7728389 + MER82 DNA MER2_type 233 284 -369 7 1689 244 323 21 21 chr5 144808909 144809004 -7728255 + Tigger7 DNA MER2_type 7 101 -2390 7 1689 652 226 8 0 chr5 144809007 144809131 -7728128 + RSINE1 SINE B4 12 136 -29 7 1689 805 184 206 6 chr5 144809166 144809346 -7727913 + B3 SINE B2 1 216 0 7 1689 1561 27 0 21 chr5 144809369 144809559 -7727700 + B2_Mm2 SINE B2 2 187 -8 7 1689 1420 82 5 0 chr5 144809577 144809761 -7727498 - B2_Mm1a SINE B2 -8 185 1 7 1689 881 193 193 0 chr5 144809836 144810017 -7727242 - B3 SINE B2 0 216 1 7 1689 1530 51 6 49 chr5 144810116 144810442 -7726817 + ZP3AR Satellite Satellite 1 311 0 7 1689 345 211 28 0 chr5 144810445 144810516 -7726743 + ID4_ SINE ID 1 73 -10 7 1689 372 99 42 0 chr5 144810517 144810588 -7726671 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 7 1689 578 254 39 8 chr5 144810594 144810721 -7726538 + RSINE1 SINE B4 2 132 -33 7 1689 326 256 22 34 chr5 144810765 144810854 -7726405 + L1MEg LINE L1 1857 1944 -4140 7 1689 698 154 13 13 chr5 144811098 144811158 -7726101 + polypyrimidine Low_complexity Low_complexity 100 160 0 7 1689 810 81 0 0 chr5 144811158 144811269 -7725990 + (TTCCC)n Simple_repeat Simple_repeat 2 112 0 7 1689 4480 75 19 0 chr5 144811273 144811845 -7725414 - MT2B2 LTR ERVL 0 584 2 7 1689 698 154 13 13 chr5 144811845 144811937 -7725322 + polypyrimidine Low_complexity Low_complexity 8 99 0 7 1689 378 0 0 0 chr5 144812156 144812198 -7725061 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1689 688 246 154 5 chr5 144812241 144812429 -7724830 - B3 SINE B2 0 216 1 7 1689 615 215 161 60 chr5 144812435 144812603 -7724656 - B4 SINE B4 -72 220 36 7 1689 825 286 14 14 chr5 144812640 144812853 -7724406 - ID_B1 SINE B4 -10 214 2 7 1689 462 281 126 17 chr5 144812914 144813017 -7724242 + MLT1B LTR MaLR 8 129 -261 7 1689 675 256 32 0 chr5 144813017 144813173 -7724086 + RSINE1 SINE B4 3 163 -2 7 1689 462 281 126 17 chr5 144813173 144813243 -7724016 + MLT1B LTR MaLR 130 199 -191 7 1689 295 231 0 152 chr5 144813234 144813326 -7723933 + B3 SINE B2 138 215 -1 7 1689 293 313 109 58 chr5 144813395 144813551 -7723708 + MLT1B LTR MaLR 194 357 -33 7 1689 293 315 0 0 chr5 144813583 144813656 -7723603 - ID4_ SINE ID -6 77 5 7 1689 477 260 55 71 chr5 144813671 144813853 -7723406 - ZP3AR Satellite Satellite -17 195 2 7 1689 459 208 132 0 chr5 144813927 144814033 -7723226 - B4A SINE B4 -172 120 1 7 1689 183 42 0 0 chr5 144814259 144814283 -7722976 + (GGGGA)n Simple_repeat Simple_repeat 1 24 0 7 1689 317 0 70 0 chr5 144814680 144814723 -7722536 + (TTTTC)n Simple_repeat Simple_repeat 2 47 0 7 1689 1223 61 0 0 chr5 144814736 144814883 -7722376 - B1_Mus1 SINE Alu 0 148 2 7 1689 888 194 19 82 chr5 144814914 144815122 -7722137 - B3A SINE B2 0 198 4 7 1689 237 254 0 33 chr5 144815136 144815197 -7722062 - PB1D10 SINE Alu -19 98 40 7 1689 966 99 28 7 chr5 144815599 144815741 -7721518 - B1_Mur2 SINE Alu -4 145 1 7 1689 739 195 39 26 chr5 144815752 144815905 -7721354 - ID_B1 SINE B4 -66 158 4 7 1689 201 147 0 0 chr5 144815949 144815983 -7721276 + (CATG)n Simple_repeat Simple_repeat 2 35 0 7 1689 295 0 71 18 chr5 144816365 144816421 -7720838 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 7 1689 1175 41 7 58 chr5 144816433 144816588 -7720671 - B1_Mus2 SINE Alu 0 147 1 7 1689 730 130 0 9 chr5 144816597 144816706 -7720553 - B1_Mur3 SINE Alu 0 149 42 7 1689 317 193 0 34 chr5 144816770 144816829 -7720430 - B1_Mus1 SINE Alu -88 60 4 7 1689 207 171 0 0 chr5 144816855 144816887 -7720372 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 7 1689 387 297 31 86 chr5 144816887 144817049 -7720210 - RSINE1 SINE B4 -12 153 1 7 1689 207 171 0 0 chr5 144817049 144817057 -7720202 + (TTTA)n Simple_repeat Simple_repeat 4 11 0 8 1689 337 234 72 36 chr5 144817077 144817188 -7720071 - PB1D10 SINE Alu -2 115 1 8 1689 345 123 0 0 chr5 144817225 144817290 -7719969 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1689 403 252 149 0 chr5 144817290 144817397 -7719862 - RSINE1 SINE B4 -41 124 2 8 1689 1276 54 0 0 chr5 144817441 144817589 -7719670 + B1_Mus1 SINE Alu 1 148 0 8 1689 278 273 54 43 chr5 144817622 144817714 -7719545 - MLT1B LTR MaLR -297 93 1 8 1689 3936 98 5 71 chr5 144818024 144818631 -7718628 + RMER2 LTR ERV1 1 567 0 8 1689 582 324 0 38 chr5 144818907 144819090 -7718169 + B3A SINE B2 23 198 0 8 1689 987 257 18 0 chr5 144819206 144819424 -7717835 + ID_B1 SINE B4 2 223 -1 8 1689 614 106 0 0 chr5 144819737 144819822 -7717437 + B2_Mm2 SINE B2 1 85 -110 8 1689 28 0 0 0 chr5 144819908 144819936 -7717323 + AT_rich Low_complexity Low_complexity 1 28 0 8 1689 1528 26 0 58 chr5 144819943 144819982 -7717277 + B2_Mm1t SINE B2 1 39 -154 8 1689 3301 16 2 56 chr5 144819982 144820392 -7716867 + RLTR10 LTR ERVK 1 388 -2 8 1689 1528 26 0 58 chr5 144820392 144820557 -7716702 + B2_Mm1t SINE B2 40 193 0 8 1689 794 327 46 0 chr5 144820622 144820839 -7716420 + B4A SINE B4 50 276 -16 8 1689 281 68 0 22 chr5 144820841 144820886 -7716373 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1689 3157 42 45 0 chr5 144820966 144821346 -7715913 + MTB LTR MaLR 4 400 0 8 1689 911 256 38 10 chr5 144821552 144821761 -7715498 + B3 SINE B2 2 216 0 8 1689 256 179 45 0 chr5 144821871 144821938 -7715321 + (TTAG)n Simple_repeat Simple_repeat 3 72 0 8 1689 975 62 123 0 chr5 144821950 144822080 -7715179 - B1_Mus2 SINE Alu 0 147 2 8 1689 907 183 0 0 chr5 144822091 144822233 -7715026 - B1_Mur4 SINE Alu -7 143 2 8 1689 204 227 0 0 chr5 144822263 144822307 -7714952 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 8 1689 550 210 16 25 chr5 144822332 144822454 -7714805 - B1_Mus1 SINE Alu -9 139 19 8 1689 1061 231 151 13 chr5 144822572 144822884 -7714375 + ORR1D2 LTR MaLR 16 370 0 8 1689 992 129 14 0 chr5 144822906 144823045 -7714214 - B1_Mus1 SINE Alu -7 141 1 8 1689 653 97 0 10 chr5 144823061 144823165 -7714094 + (TTC)n Simple_repeat Simple_repeat 1 103 0 8 1689 1146 61 0 52 chr5 144823165 144823320 -7713939 - B1_Mus2 SINE Alu 0 147 1 8 1689 229 197 14 14 chr5 144823429 144823501 -7713758 + CT-rich Low_complexity Low_complexity 1 72 0 8 1689 665 224 129 0 chr5 144823502 144823649 -7713610 - ID_B1 SINE B4 -13 211 46 8 1689 359 253 149 77 chr5 144823984 144824246 -7713013 - MLT1C LTR MaLR -69 398 97 8 1689 3263 50 2 20 chr5 144824390 144824797 -7712462 + MTB LTR MaLR 1 400 0 8 1689 249 284 13 26 chr5 144825487 144825563 -7711696 + RSINE1 SINE B4 2 76 -89 8 1689 311 279 103 35 chr5 144825535 144825680 -7711579 + B4A SINE B4 132 286 -6 8 1689 360 0 0 0 chr5 144825735 144825775 -7711484 + (CA)n Simple_repeat Simple_repeat 1 40 0 8 1689 4030 160 80 73 chr5 144825874 144826497 -7710762 - Lx5 LINE L1 -1 7049 6426 8 1689 369 0 0 0 chr5 144826497 144826538 -7710721 + (TC)n Simple_repeat Simple_repeat 2 42 0 8 1689 1077 82 0 0 chr5 144826539 144826673 -7710586 - B1_Mus2 SINE Alu -12 135 2 8 1689 4030 160 80 73 chr5 144826673 144826921 -7710338 - Lx5 LINE L1 -625 6425 6170 8 1689 593 211 109 58 chr5 144827400 144827556 -7709703 - ID_B1 SINE B4 -10 214 51 8 1689 397 296 65 72 chr5 144827750 144827903 -7709356 + MER89 LTR ERV1 199 350 -209 8 1689 331 280 0 0 chr5 144828077 144828152 -7709107 - ZP3AR Satellite Satellite -130 82 8 8 1689 2438 183 259 10 chr5 144828367 144828957 -7708302 + RMER19A LTR ERVK 1 737 0 8 1689 916 112 7 63 chr5 144829239 144829382 -7707877 - B1_Mus1 SINE Alu -11 137 3 8 1689 1399 210 166 99 chr5 144830130 144830495 -7706764 - MT2A LTR ERVL -71 462 64 8 1689 5617 133 39 50 chr5 144830495 144831463 -7705796 - RMER17B LTR ERVK 0 958 1 8 1689 1399 210 166 99 chr5 144831463 144831530 -7705729 - MT2A LTR ERVL -470 63 1 8 1689 667 187 0 9 chr5 144831530 144831638 -7705621 - ZP3AR Satellite Satellite -94 118 12 8 1689 398 116 29 0 chr5 144831661 144831730 -7705529 + (TTTC)n Simple_repeat Simple_repeat 4 74 0 8 1689 600 256 0 31 chr5 144831781 144831910 -7705349 + PB1 SINE Alu 1 125 -2 8 1689 196 100 60 0 chr5 144831910 144831951 -7705308 + A-rich Low_complexity Low_complexity 12 55 0 8 1689 824 217 51 0 chr5 144831979 144832154 -7705105 + ID_B1 SINE B4 25 208 -16 8 1689 253 292 32 45 chr5 144832175 144832329 -7704930 - L1ME1 LINE L1 -67 6112 5961 8 1689 351 66 0 0 chr5 144832587 144832648 -7704611 - MT2A LTR ERVL 0 533 473 8 1689 183 156 0 0 chr5 144832684 144832716 -7704543 + (TG)n Simple_repeat Simple_repeat 1 32 0 8 1689 387 0 0 0 chr5 144832736 144832779 -7704480 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 8 1689 877 44 9 9 chr5 144832781 144832896 -7704363 - B1_Mm SINE Alu -6 141 27 8 1689 1711 175 159 95 chr5 144832884 144833325 -7703934 - MT2A LTR ERVL -64 469 1 8 1689 447 19 0 0 chr5 144833376 144833428 -7703831 + (TG)n Simple_repeat Simple_repeat 2 53 0 8 1689 251 245 80 47 chr5 144833431 144833581 -7703678 + RLTR22_Mur LTR ERVK 1306 1460 -388 8 1689 214 148 37 0 chr5 144833582 144833636 -7703623 + (TATG)n Simple_repeat Simple_repeat 3 58 0 8 1689 462 354 8 0 chr5 144833636 144833763 -7703496 - RSINE1 SINE B4 0 165 38 8 1689 1269 41 0 0 chr5 144833858 144834005 -7703254 - B1_Mus2 SINE Alu 0 147 1 8 1689 247 244 167 0 chr5 144834089 144834143 -7703116 + RSINE1 SINE B4 58 122 -43 8 1689 618 14 0 0 chr5 144834143 144834214 -7703045 + (CA)n Simple_repeat Simple_repeat 2 72 0 8 1689 247 244 167 0 chr5 144834214 144834237 -7703022 + RSINE1 SINE B4 123 147 -18 8 1689 180 0 0 0 chr5 144834261 144834281 -7702978 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 1689 550 92 26 0 chr5 144834281 144834357 -7702902 - B1_Mur4 SINE Alu -13 137 60 8 211 511 196 20 49 chr5 144834551 144834653 -7702606 - MTE2b LTR MaLR 0 379 281 8 1690 1007 263 71 26 chr5 144834659 144834967 -7702292 + RLTR14 LTR ERV1 12 333 -49 8 1690 851 184 14 7 chr5 144834989 144835137 -7702122 + B1_Mur4 SINE Alu 1 149 -1 8 1690 1056 36 65 7 chr5 144835144 144835283 -7701976 + B1_Mus2 SINE Alu 1 147 0 8 1690 621 88 0 0 chr5 144835283 144835385 -7701874 + (A)n Simple_repeat Simple_repeat 1 102 0 8 1690 587 256 71 59 chr5 144835424 144835594 -7701665 - MTE2b LTR MaLR -127 252 81 8 1690 447 19 0 0 chr5 144835594 144835646 -7701613 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1690 398 261 98 43 chr5 144835646 144835748 -7701511 - MTE2b LTR MaLR -309 112 3 8 1690 729 209 27 5 chr5 144836027 144836215 -7701044 - B3 SINE B2 0 198 5 8 1690 675 283 18 29 chr5 144836565 144836736 -7700523 + ID_B1 SINE B4 54 222 -2 8 1690 349 43 43 0 chr5 144836740 144836787 -7700472 + B2_Mm2 SINE B2 1 49 -146 8 1690 915 59 0 25 chr5 144836781 144836903 -7700356 + B1_Mus1 SINE Alu 30 148 0 8 1690 1071 73 0 0 chr5 144836924 144837060 -7700199 + B2_Mm2 SINE B2 27 162 -33 8 1690 1202 85 11 0 chr5 144837071 144837247 -7700012 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 8 1690 297 210 105 48 chr5 144837548 144837653 -7699606 - MTEb LTR MaLR -17 362 252 8 1690 373 250 51 43 chr5 144837590 144837601 -7699658 + MT2B LTR ERVL 154 201 -400 8 1690 444 226 65 0 chr5 144837601 144837694 -7699565 + B1_Mm SINE Alu 2 100 -47 8 1690 267 257 91 66 chr5 144837642 144837763 -7699496 + RLTR25B LTR ERVK 451 574 -454 8 1690 373 250 51 43 chr5 144837694 144837707 -7699552 + MT2B LTR ERVL 202 271 -330 8 1690 642 232 39 13 chr5 144837761 144837916 -7699343 + B3A SINE B2 8 157 -38 8 1690 374 200 198 11 chr5 144837883 144837974 -7699285 - B3 SINE B2 -108 108 1 8 1690 337 240 8 133 chr5 144837974 144838084 -7699175 + B4A SINE B4 198 292 0 8 1690 321 260 32 186 chr5 144838121 144838277 -7698982 + ID_B1 SINE B4 89 220 -4 8 1690 453 202 67 11 chr5 144838293 144838383 -7698876 - B1F1 SINE Alu -51 98 4 8 1690 444 309 79 83 chr5 144838417 144838671 -7698588 + MLT1J LTR MaLR 258 510 -2 8 1690 556 342 66 8 chr5 144838684 144838940 -7698319 - MLT1N2 LTR MaLR 0 562 292 8 1690 339 25 0 0 chr5 144839518 144839558 -7697701 + (TTA)n Simple_repeat Simple_repeat 3 42 0 8 1690 295 311 15 105 chr5 144839663 144839678 -7697581 + MT2B LTR ERVL 156 158 -443 8 1690 591 261 27 27 chr5 144839678 144839824 -7697435 + B1F SINE Alu 2 147 -2 8 1690 235 340 54 102 chr5 144839679 144839846 -7697413 + B4A SINE B4 89 247 -45 8 1690 369 0 0 0 chr5 144839962 144840003 -7697256 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1690 477 245 142 0 chr5 144840003 144840109 -7697150 - RSINE1 SINE B4 -41 124 4 8 1690 1013 252 22 9 chr5 144840226 144840450 -7696809 + B4 SINE B4 1 227 -65 8 1690 314 280 0 47 chr5 144840451 144840537 -7696722 + ID4 SINE ID 2 83 0 8 1690 567 171 23 0 chr5 144840554 144840683 -7696576 + GA-rich Low_complexity Low_complexity 1 132 0 8 1690 541 252 27 34 chr5 144840726 144840861 -7696398 + B1F1 SINE Alu 3 138 -11 8 1690 222 37 0 0 chr5 144840861 144840888 -7696371 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1690 541 252 27 34 chr5 144840888 144840900 -7696359 + B1F1 SINE Alu 139 149 0 8 1690 24 0 0 0 chr5 144840900 144840924 -7696335 + AT_rich Low_complexity Low_complexity 1 24 0 8 1690 227 300 57 0 chr5 144840924 144840994 -7696265 + B4 SINE B4 215 288 -4 8 1690 590 228 156 0 chr5 144841031 144841198 -7696061 - ORR1D1 LTR MaLR -174 200 8 8 1690 243 268 107 14 chr5 144841479 144841619 -7695640 - RLTR21 LTR ERVK -330 1242 1090 8 1690 297 0 0 0 chr5 144841661 144841694 -7695565 + (CAA)n Simple_repeat Simple_repeat 2 34 0 8 1690 210 321 0 0 chr5 144841990 144842043 -7695216 + polypyrimidine Low_complexity Low_complexity 2 54 0 8 1690 368 200 11 48 chr5 144842044 144842317 -7694942 + CT-rich Low_complexity Low_complexity 1 262 0 9 1690 213 328 0 0 chr5 144842323 144842381 -7694878 - ID4 SINE ID -1 82 25 9 1690 321 303 67 48 chr5 144842406 144842510 -7694749 - PB1D10 SINE Alu 0 117 12 9 1690 1652 27 5 0 chr5 144842624 144842812 -7694447 + B2_Mm1t SINE B2 1 189 -4 9 1690 611 240 58 27 chr5 144843346 144843505 -7693754 + B3A SINE B2 1 160 -38 9 1690 510 17 0 0 chr5 144843505 144843564 -7693695 + (CA)n Simple_repeat Simple_repeat 1 59 0 9 1690 307 305 69 63 chr5 144843564 144843579 -7693680 + B2_Mm2 SINE B2 159 175 -20 9 1690 1231 34 0 7 chr5 144844194 144844340 -7692919 + B1_Mm SINE Alu 3 147 0 9 1690 550 237 63 32 chr5 144844714 144844860 -7692399 - ID_B1 SINE B4 -4 220 77 9 1690 292 237 12 50 chr5 144844901 144844981 -7692278 - B4A SINE B4 0 292 216 9 1690 243 214 0 0 chr5 144845065 144845107 -7692152 - B3 SINE B2 -31 185 144 9 1690 1419 145 144 58 chr5 144845109 144845453 -7691806 - ORR1B2 LTR MaLR 0 367 13 9 1690 1337 102 4 41 chr5 144845468 144845713 -7691546 + RMER10B LTR ERVL 30 265 -133 9 1690 1131 148 9 47 chr5 144845710 144845922 -7691337 + RMER10B LTR ERVL 195 398 0 9 1690 514 224 17 17 chr5 144845945 144846063 -7691196 - B3 SINE B2 -97 119 2 9 1690 670 228 122 21 chr5 144846063 144846238 -7691021 - B4A SINE B4 -60 232 39 9 1690 294 29 0 0 chr5 144846238 144846273 -7690986 + (TTA)n Simple_repeat Simple_repeat 3 37 0 9 1690 1183 68 0 0 chr5 144846321 144846468 -7690791 - B1_Mus2 SINE Alu 0 147 1 9 1690 444 244 141 20 chr5 144847026 144847150 -7690109 + PB1D9 SINE Alu 1 124 -3 9 1690 430 190 0 0 chr5 144847189 144847268 -7689991 + ZP3AR Satellite Satellite 4 82 -130 9 1690 553 280 0 39 chr5 144848007 144848137 -7689122 - ZP3AR Satellite Satellite -61 151 27 9 1690 2040 164 31 0 chr5 144848138 144848461 -7688798 - RLTR19 LTR ERVK 0 499 167 9 1690 1371 57 11 6 chr5 144848461 144848639 -7688620 + B2_Mm1t SINE B2 1 179 -14 9 1690 388 144 69 13 chr5 144848667 144848779 -7688480 + B2_Mm2 SINE B2 47 193 0 9 1690 1361 67 6 16 chr5 144848767 144848950 -7688309 - RLTR19 LTR ERVK -318 181 1 9 1690 279 237 17 0 chr5 144848966 144849025 -7688234 - ZP3AR Satellite Satellite -102 110 51 9 1690 275 254 139 33 chr5 144849455 144849577 -7687682 + L2b LINE L2 3238 3372 -3 9 1690 815 148 7 78 chr5 144850002 144850156 -7687103 + B1_Mur4 SINE Alu 1 143 -7 9 1690 356 381 73 56 chr5 144850196 144850499 -7686760 + L2b LINE L2 3062 3369 -6 9 1690 395 297 119 82 chr5 144850824 144851092 -7686167 + B4A SINE B4 1 278 -14 9 1690 1221 55 0 0 chr5 144851197 144851342 -7685917 + B1_Mm SINE Alu 3 147 0 9 1690 546 222 71 0 chr5 144851366 144851465 -7685794 - B1_Mur1 SINE Alu -15 134 29 9 1690 3058 16 2 140 chr5 144851559 144852009 -7685250 + RLTR10 LTR ERVK 1 388 -2 9 1690 8105 31 16 31 chr5 144852011 144853014 -7684245 + RLTR10-int LTR ERVK 1 988 -999 9 1690 9073 15 2 0 chr5 144853092 144854085 -7683174 + RLTR10-int LTR ERVK 990 1984 -3 9 1690 2953 18 2 171 chr5 144854087 144854554 -7682705 + RLTR10 LTR ERVK 1 388 -2 9 1690 912 171 119 5 chr5 144854704 144854898 -7682361 - B3 SINE B2 0 216 1 9 1690 770 228 0 14 chr5 144854964 144855111 -7682148 - RSINE1 SINE B4 -19 146 2 9 1690 241 283 62 42 chr5 144855141 144855237 -7682022 + MIRc SINE MIR 60 157 -111 9 1690 182 37 0 36 chr5 144855249 144855277 -7681982 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 9 1690 310 170 0 0 chr5 144855278 144855331 -7681928 + PB1D9 SINE Alu 2 54 -66 9 1690 245 250 0 45 chr5 144855279 144855346 -7681913 + ID_B1 SINE B4 84 147 -77 9 1690 286 253 42 0 chr5 144855346 144855441 -7681818 + (CAGG)n Simple_repeat Simple_repeat 3 101 0 9 1690 280 207 0 79 chr5 144855441 144855530 -7681729 + RLTR25B LTR ERVK 432 513 -515 9 1690 712 114 0 19 chr5 144855454 144855561 -7681698 + B1_Mus2 SINE Alu 42 146 -1 9 1690 489 234 65 24 chr5 144855562 144855716 -7681543 + L1MB8 LINE L1 5883 6039 -145 9 1690 213 39 0 0 chr5 144855716 144855742 -7681517 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1690 1218 61 0 0 chr5 144855742 144855889 -7681370 - B1_Mus2 SINE Alu 0 147 1 9 1690 504 224 17 75 chr5 144855913 144856087 -7681172 - RSINE1 SINE B4 0 165 2 9 1690 248 83 0 0 chr5 144856088 144856124 -7681135 + L1MB8 LINE L1 6028 6063 -115 9 1690 231 184 61 0 chr5 144856130 144856179 -7681080 + MIR SINE MIR 180 231 -31 9 1690 201 147 0 0 chr5 144856248 144856282 -7680977 + (TGGGGG)n Simple_repeat Simple_repeat 1 34 0 9 1690 613 300 35 0 chr5 144856787 144856957 -7680302 + B3 SINE B2 8 183 -33 9 1690 290 162 267 70 chr5 144857011 144857097 -7680162 - PB1D10 SINE Alu 0 117 15 9 1690 592 250 31 15 chr5 144857057 144857187 -7680072 - ID_B1 SINE B4 -89 135 4 9 1690 3325 120 18 8 chr5 144857299 144857793 -7679466 - RLTR19 LTR ERVK 0 499 1 9 1690 780 191 13 33 chr5 144857922 144858074 -7679185 - B1_Mur4 SINE Alu -1 149 1 9 1690 376 302 38 0 chr5 144858129 144858235 -7679024 - PB1D10 SINE Alu -2 115 6 9 1690 822 274 13 22 chr5 144858261 144858485 -7678774 + ID_B1 SINE B4 2 223 -1 9 1690 731 286 5 30 chr5 144858510 144858708 -7678551 + B3A SINE B2 1 193 -5 9 1690 308 229 0 0 chr5 144858759 144858820 -7678439 - MER63D DNA AcHobo -965 96 36 9 1690 261 135 0 0 chr5 144859109 144859161 -7678098 + (T)n Simple_repeat Simple_repeat 1 52 0 9 1690 202 180 0 32 chr5 144860018 144860081 -7677178 + (TATG)n Simple_repeat Simple_repeat 4 64 0 9 1690 354 45 0 0 chr5 144860137 144860181 -7677078 + (TG)n Simple_repeat Simple_repeat 1 44 0 9 1690 833 239 86 63 chr5 144860182 144860437 -7676822 - B4 SINE B4 -23 269 9 9 1690 207 227 0 22 chr5 144860521 144860566 -7676693 - L2c LINE L2 -60 3327 3284 9 1690 21 0 0 0 chr5 144860820 144860841 -7676418 + AT_rich Low_complexity Low_complexity 1 21 0 9 1690 204 40 0 0 chr5 144861317 144861342 -7675917 + (CGG)n Simple_repeat Simple_repeat 2 26 0 9 1690 202 260 0 0 chr5 144861544 144861594 -7675665 + (CCG)n Simple_repeat Simple_repeat 3 52 0 9 1690 201 74 0 0 chr5 144862169 144862196 -7675063 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 9 1690 219 69 0 0 chr5 144862483 144862512 -7674747 + (TTTC)n Simple_repeat Simple_repeat 1 29 0 9 1690 402 303 58 19 chr5 144862536 144862691 -7674568 - MIR3 SINE MIR -11 197 37 9 1690 297 0 0 0 chr5 144863157 144863190 -7674069 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1690 525 224 0 0 chr5 144863267 144863392 -7673867 + (TA)n Simple_repeat Simple_repeat 1 125 0 9 1690 220 218 73 0 chr5 144863726 144863781 -7673478 + CT-rich Low_complexity Low_complexity 3 61 0 9 1690 234 91 0 0 chr5 144863928 144863961 -7673298 + (TA)n Simple_repeat Simple_repeat 1 33 0 9 1690 2258 137 59 16 chr5 144864070 144864457 -7672802 + MTB_Mm LTR MaLR 3 406 -1 9 1690 229 252 94 94 chr5 144864567 144864716 -7672543 + B1F2 SINE Alu 1 149 0 9 1690 1255 161 9 14 chr5 144864801 144865015 -7672244 - B3 SINE B2 -3 213 1 9 1690 350 88 322 26 chr5 144865034 144865149 -7672110 - B2_Mm2 SINE B2 0 195 47 9 1690 1026 88 0 0 chr5 144865180 144865316 -7671943 - B2_Mm2 SINE B2 -59 136 1 9 1690 431 245 28 0 chr5 144865555 144865661 -7671598 - PB1D10 SINE Alu -6 111 3 9 1690 708 166 37 22 chr5 144866707 144866843 -7670416 + B1_Mus1 SINE Alu 2 139 -9 9 1690 288 0 0 0 chr5 144866852 144866884 -7670375 + (CA)n Simple_repeat Simple_repeat 2 33 0 9 1690 291 257 77 24 chr5 144866948 144867075 -7670184 + PB1D10 SINE Alu 3 125 -2 9 1690 732 171 55 35 chr5 144867086 144867231 -7670028 + B1_Mur1 SINE Alu 1 148 -1 9 1690 245 311 81 0 chr5 144867241 144867315 -7669944 + ID4_ SINE ID 2 81 -2 9 1690 407 298 92 33 chr5 144867263 144867340 -7669919 + ID_B1 SINE B4 30 223 0 9 1690 790 66 9 0 chr5 144867340 144867446 -7669813 + B1_Mus2 SINE Alu 41 147 0 9 1690 186 43 0 0 chr5 144867451 144867474 -7669785 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1690 664 177 41 38 chr5 144867547 144867717 -7669542 + B3 SINE B2 1 188 -7 9 1690 717 175 203 21 chr5 144867906 144868093 -7669166 - ID_B1 SINE B4 -1 223 3 9 1690 360 0 0 0 chr5 144868562 144868602 -7668657 + (TC)n Simple_repeat Simple_repeat 1 40 0 9 1690 417 274 75 9 chr5 144868647 144868754 -7668505 + RSINE1 SINE B4 4 117 -48 9 1690 27 29 0 0 chr5 144868781 144868815 -7668444 + AT_rich Low_complexity Low_complexity 1 34 0 9 1690 572 253 40 85 chr5 144868963 144869140 -7668119 + B3A SINE B2 30 198 0 9 1690 518 259 44 7 chr5 144869170 144869306 -7667953 + B1F1 SINE Alu 1 141 -8 9 1690 227 191 231 31 chr5 144869310 144869375 -7667884 + ID4_ SINE ID 2 79 -4 9 1690 891 177 241 17 chr5 144870016 144870043 -7667216 - B4 SINE B4 0 292 266 9 1690 363 44 0 0 chr5 144870043 144870088 -7667171 + (GA)n Simple_repeat Simple_repeat 1 45 0 9 1690 891 177 241 17 chr5 144870088 144870296 -7666963 - B4 SINE B4 -27 265 4 9 1690 767 274 39 15 chr5 144871103 144871307 -7665952 - B4 SINE B4 0 292 84 9 1690 204 216 0 0 chr5 144871431 144871482 -7665777 + T-rich Low_complexity Low_complexity 1 51 0 9 1690 287 267 102 62 chr5 144873041 144873169 -7664090 - ID_B1 SINE B4 0 224 92 9 1690 252 146 82 20 chr5 144873176 144873225 -7664034 - L1MC3 LINE L1 -422 7363 7312 9 1690 235 233 0 77 chr5 144873283 144873348 -7663911 - L1MC3 LINE L1 -629 7156 7097 9 1690 368 261 68 88 chr5 144873356 144873391 -7663868 - B2_Mm1t SINE B2 -2 191 160 9 1690 183 80 0 0 chr5 144873391 144873416 -7663843 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1690 382 250 66 34 chr5 144873416 144873527 -7663732 - B3A SINE B2 -34 159 48 9 1690 527 298 39 48 chr5 144873454 144873662 -7663597 - ID_B1 SINE B4 -16 208 3 1 1690 351 0 0 0 chr5 144874162 144874201 -7663058 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1690 345 24 0 0 chr5 144874201 144874242 -7663017 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1690 429 231 48 1 chr5 144874264 144874359 -7662900 - B1F2 SINE Alu -18 99 1 1 1690 364 242 51 31 chr5 144874281 144874379 -7662880 - B4A SINE B4 -125 167 68 1 1690 276 264 0 40 chr5 144874353 144874428 -7662831 - B4A SINE B4 -153 139 68 1 1690 285 250 0 40 chr5 144874402 144874477 -7662782 - B4A SINE B4 -153 139 68 1 1690 326 222 0 40 chr5 144874451 144874526 -7662733 - B4A SINE B4 -153 139 68 1 1690 287 250 0 40 chr5 144874500 144874575 -7662684 - B4A SINE B4 -153 139 68 1 1690 300 250 0 40 chr5 144874549 144874624 -7662635 - B4A SINE B4 -153 139 68 1 1690 286 229 0 32 chr5 144874598 144874661 -7662598 - B4A SINE B4 -153 139 79 1 1690 3540 78 24 7 chr5 144874813 144875278 -7661981 - Lx4A LINE L1 -153 6905 6433 1 1690 661 261 26 74 chr5 144875306 144875457 -7661802 - B3A SINE B2 -16 182 33 1 1690 1219 115 15 25 chr5 144875457 144875654 -7661605 - B2_Mm2 SINE B2 0 195 1 1 1690 661 261 26 74 chr5 144875654 144875692 -7661567 - B3A SINE B2 -166 32 2 1 1690 599 214 68 15 chr5 144875851 144875984 -7661275 - B1F2 SINE Alu 0 149 10 1 1690 307 279 139 0 chr5 144876067 144876153 -7661106 + PB1 SINE Alu 27 124 -3 1 1690 623 273 87 97 chr5 144876535 144876823 -7660436 + B4A SINE B4 8 292 0 1 1690 353 240 109 91 chr5 144877183 144877293 -7659966 - B1_Mur1 SINE Alu -29 120 9 1 1690 653 230 16 48 chr5 144877381 144877568 -7659691 - B3 SINE B2 0 216 36 1 1690 349 245 185 38 chr5 144877607 144877764 -7659495 - B3A SINE B2 -18 180 1 1 1690 233 179 0 0 chr5 144877783 144877822 -7659437 - ID_B1 SINE B4 -31 193 155 1 1690 350 213 26 13 chr5 144877822 144877898 -7659361 - ID4_ SINE ID -6 77 1 1 1690 288 357 137 32 chr5 144878616 144878931 -7658328 - ORR1E LTR MaLR 0 359 12 1 1690 22 0 0 0 chr5 144879065 144879087 -7658172 + AT_rich Low_complexity Low_complexity 1 22 0 1 1690 371 286 2 133 chr5 144879121 144879226 -7658033 - PB1 SINE Alu -50 98 6 1 1690 1762 117 94 76 chr5 144879268 144879500 -7657759 + ORR1B1 LTR MaLR 47 288 -106 1 1690 279 71 0 0 chr5 144879500 144879542 -7657717 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 1 1690 1143 35 0 47 chr5 144879543 144879691 -7657568 - B1_Mm SINE Alu -6 141 1 1 1690 1762 117 94 76 chr5 144879691 144879797 -7657462 + ORR1B1 LTR MaLR 289 393 -1 1 1690 29 47 0 0 chr5 144879811 144879854 -7657405 + AT_rich Low_complexity Low_complexity 1 43 0 1 1690 266 158 0 7 chr5 144879866 144879918 -7657341 - B2_Mm2 SINE B2 -107 109 60 1 1690 1163 98 6 0 chr5 144879962 144880125 -7657134 - B2_Mm1t SINE B2 -28 165 2 1 1690 392 236 33 11 chr5 144880158 144880248 -7657011 - PB1D10 SINE Alu -11 106 15 1 1690 317 276 11 22 chr5 144880178 144880267 -7656992 - B4A SINE B4 -124 168 81 1 1690 665 240 64 3 chr5 144880779 144880977 -7656282 + B4A SINE B4 2 225 -67 1 1690 523 301 20 33 chr5 144880979 144881130 -7656129 + RSINE1 SINE B4 2 150 -15 1 1690 369 0 0 0 chr5 144881131 144881172 -7656087 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1690 227 227 0 83 chr5 144881291 144881302 -7655957 + B4A SINE B4 80 86 -206 1 1690 311 272 250 0 chr5 144881302 144881394 -7655865 + PB1D10 SINE Alu 2 116 -1 1 1690 599 222 130 197 chr5 144882204 144882412 -7654847 + B3A SINE B2 2 195 0 1 1690 25 0 0 0 chr5 144882807 144882832 -7654427 + AT_rich Low_complexity Low_complexity 1 25 0 1 1690 541 142 307 9 chr5 144882832 144882946 -7654313 - B1_Mur4 SINE Alu -2 148 1 1 1690 233 307 84 74 chr5 144882959 144883054 -7654205 + ID_B1 SINE B4 81 176 -48 1 1690 412 238 73 73 chr5 144882970 144883079 -7654180 + PB1D10 SINE Alu 9 117 0 1 1690 579 277 118 47 chr5 144883120 144883332 -7653927 + B4A SINE B4 55 281 -11 1 1690 762 279 44 66 chr5 144883441 144883760 -7653499 + MLT1B LTR MaLR 54 365 -25 1 1690 436 239 35 26 chr5 144884448 144884564 -7652695 + MLT1B LTR MaLR 350 466 -1 1 1690 268 292 0 0 chr5 144884581 144884646 -7652613 + RSINE1 SINE B4 27 91 -74 1 1690 609 175 134 8 chr5 144885051 144885178 -7652081 + B1_Mur2 SINE Alu 1 143 -6 1 1690 322 263 55 102 chr5 144885313 144885440 -7651819 + RMER30 DNA MER1_type 2 122 -80 1 1690 544 238 19 9 chr5 144885455 144885561 -7651698 + RSINE1 SINE B4 4 110 -55 1 1690 1371 78 22 0 chr5 144885601 144885781 -7651478 + B2_Mm1t SINE B2 2 185 -8 1 1690 228 247 217 24 chr5 144885787 144885870 -7651389 + RMER30 DNA MER1_type 103 201 -1 1 1690 443 271 40 7 chr5 144885950 144886102 -7651157 + RSINE1 SINE B4 3 159 -6 1 1690 269 284 12 24 chr5 144886142 144886225 -7651034 + RMER15 LTR ERVL 454 535 -40 1 1690 393 335 43 18 chr5 144887113 144887277 -7649982 + B4 SINE B4 40 207 -85 1 1690 216 0 0 0 chr5 144887367 144887391 -7649868 + (CA)n Simple_repeat Simple_repeat 2 25 0 1 1690 239 267 45 34 chr5 144887693 144887708 -7649551 + MT2B LTR ERVL 152 167 -434 1 1690 457 180 190 0 chr5 144887708 144887808 -7649451 + PB1D9 SINE Alu 2 120 0 1 1690 209 293 60 12 chr5 144887904 144887987 -7649272 + MIRb SINE MIR 116 202 -66 1 1690 418 241 87 36 chr5 144887987 144888125 -7649134 - MER104 DNA Tc2 0 181 37 1 1690 294 320 97 29 chr5 144888132 144888235 -7649024 + PB1D10 SINE Alu 1 110 -7 1 1690 218 300 12 48 chr5 144888241 144888325 -7648934 + RSINE1 SINE B4 2 82 -83 1 1690 217 294 11 105 chr5 144888325 144888336 -7648923 + B3A SINE B2 1 86 -112 1 1690 358 319 8 58 chr5 144888379 144888499 -7648760 + B4A SINE B4 179 292 0 1 1690 831 273 64 23 chr5 144888648 144888874 -7648385 + B4A SINE B4 2 238 -54 1 1690 289 296 152 53 chr5 144888874 144889006 -7648253 + B1_Mur1 SINE Alu 1 145 -3 1 1690 620 224 9 0 chr5 144889059 144889175 -7648084 - B3 SINE B2 -98 118 2 1 1690 393 68 0 0 chr5 144889276 144889335 -7647924 + L1_Mus2 LINE L1 6508 6566 0 1 1690 288 0 0 0 chr5 144889371 144889403 -7647856 + (T)n Simple_repeat Simple_repeat 1 32 0 1 1690 667 101 0 29 chr5 144889403 144889505 -7647754 - B1_Mus2 SINE Alu 0 147 49 1 1690 384 255 155 13 chr5 144889754 144889909 -7647350 + L1MC4a LINE L1 7426 7602 -280 1 1690 922 249 98 8 chr5 144890434 144890689 -7646570 - B4 SINE B4 -13 279 2 1 1690 333 0 0 0 chr5 144890953 144890990 -7646269 + (TG)n Simple_repeat Simple_repeat 2 38 0 1 1690 1305 224 20 20 chr5 144891022 144891314 -7645945 - B4 SINE B4 0 292 1 1 1690 1267 46 103 11 chr5 144891361 144891536 -7645723 - B2_Mm2 SINE B2 -3 192 2 1 1690 268 260 58 0 chr5 144891937 144892036 -7645223 + PB1D10 SINE Alu 1 107 -40 1 1690 633 105 0 0 chr5 144892765 144892860 -7644399 + (TCC)n Simple_repeat Simple_repeat 2 96 0 1 1690 450 0 0 0 chr5 144892863 144892913 -7644346 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1690 406 325 72 50 chr5 144893079 144893358 -7643901 + B4 SINE B4 2 286 -6 1 1690 252 0 0 0 chr5 144893385 144893413 -7643846 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 1 1690 344 210 196 20 chr5 144894105 144894207 -7643052 - PB1 SINE Alu -7 120 1 1 1690 312 226 97 0 chr5 144894284 144894377 -7642882 - B3A SINE B2 -96 102 1 1 1690 304 292 56 3 chr5 144894707 144894829 -7642430 + PB1D10 SINE Alu 3 128 -21 1 1690 897 146 66 12 chr5 144895367 144895533 -7641726 + B2_Mm2 SINE B2 3 177 -18 1 1690 432 55 0 0 chr5 144895544 144895599 -7641660 + (CAGAA)n Simple_repeat Simple_repeat 4 58 0 1 1690 475 241 300 0 chr5 144895642 144895812 -7641447 + ID_B1 SINE B4 1 221 -3 1 1690 1189 207 154 21 chr5 144896110 144896440 -7640819 - ORR1D1 LTR MaLR 0 374 1 1 1690 833 159 14 14 chr5 144896473 144896620 -7640639 + B1_Mur2 SINE Alu 3 149 0 1 1690 435 303 135 33 chr5 144896652 144896867 -7640392 + B4A SINE B4 7 243 -49 1 1690 273 136 0 0 chr5 144896881 144896925 -7640334 + B3 SINE B2 162 205 -11 1 1690 1195 75 37 0 chr5 144897179 144897340 -7639919 - B2_Mm2 SINE B2 -27 168 2 1 1690 314 278 8 58 chr5 144897763 144897897 -7639362 + B4A SINE B4 1 130 -162 1 1690 885 162 13 7 chr5 144898260 144898409 -7638850 + B1_Mur4 SINE Alu 1 150 0 1 1690 805 221 205 37 chr5 144898454 144898698 -7638561 + B4 SINE B4 1 285 -7 1 1690 659 250 0 7 chr5 144899267 144899416 -7637843 - B1_Mur1 SINE Alu 0 149 2 1 1690 538 265 0 0 chr5 144899546 144899648 -7637611 - PB1D10 SINE Alu -15 102 1 1 1690 248 149 90 0 chr5 144899710 144899777 -7637482 - L1MC1 LINE L1 0 6333 6261 1 1690 394 272 53 152 chr5 144899870 144899980 -7637279 - L1M4c LINE L1 -930 5714 5603 1 1690 351 0 0 0 chr5 144899980 144900019 -7637240 + (TC)n Simple_repeat Simple_repeat 2 40 0 1 1690 1345 93 0 16 chr5 144900027 144900212 -7637047 - B2_Mm2 SINE B2 -13 182 1 1 1690 394 272 53 152 chr5 144900212 144900230 -7637029 - L1M4c LINE L1 -1048 5596 5595 1 1690 1216 55 0 7 chr5 144900230 144900377 -7636882 - B1_Mus1 SINE Alu -1 147 2 1 1690 394 272 53 152 chr5 144900377 144900481 -7636778 - L1M4c LINE L1 -1050 5594 5496 1 1690 232 298 71 71 chr5 144900484 144900510 -7636749 - B2_Mm1t SINE B2 -3 190 165 1 1690 306 0 0 0 chr5 144900510 144900544 -7636715 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1690 490 286 17 0 chr5 144900544 144900663 -7636596 - B3 SINE B2 -51 165 45 1 1690 624 246 95 53 chr5 144900942 144901068 -7636191 - ID_B1 SINE B4 -26 198 63 1 1690 3152 42 34 5 chr5 144901068 144901453 -7635806 + MTA_Mm LTR MaLR 1 396 0 1 1690 624 246 95 53 chr5 144901453 144901515 -7635744 - ID SINE ID -162 62 2 1 1690 262 260 61 30 chr5 144901518 144901617 -7635642 - L1M2 LINE L1 -1180 4963 4862 1 1690 795 262 36 36 chr5 144901641 144901835 -7635424 - B3 SINE B2 -1 215 22 1 1690 225 108 0 0 chr5 144901862 144901899 -7635360 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1 1690 465 245 103 58 chr5 144901919 144902075 -7635184 - B3A SINE B2 -15 183 21 1 1690 289 319 27 80 chr5 144902089 144902239 -7635020 - RSINE1 SINE B4 -11 154 13 1 1690 1049 92 35 7 chr5 144902322 144902465 -7634794 - B1_Mus1 SINE Alu -1 147 1 1 1690 1213 54 0 0 chr5 144902486 144902633 -7634626 - B1_Mus1 SINE Alu 0 148 2 1 1690 22 35 0 0 chr5 144902640 144902669 -7634590 + AT_rich Low_complexity Low_complexity 1 29 0 1 1690 681 242 88 34 chr5 144902682 144902887 -7634372 - B3 SINE B2 0 216 1 1 1690 527 292 68 57 chr5 144903007 144903241 -7634018 + ID_B1 SINE B4 3 240 -52 1 1690 420 300 185 42 chr5 144903277 144903677 -7633582 - L1M4c LINE L1 -4467 2179 1723 1 1690 250 260 0 0 chr5 144903911 144903984 -7633275 - L1M4c LINE L1 -4974 1568 1496 1 1690 383 175 124 76 chr5 144904092 144904107 -7633152 - PB1D10 SINE Alu 0 117 106 1 1690 1155 72 0 0 chr5 144904107 144904246 -7633013 - B1_Mus1 SINE Alu -6 142 4 1 1690 383 175 124 76 chr5 144904246 144904335 -7632924 - PB1D10 SINE Alu -12 105 8 1 1690 262 184 41 0 chr5 144904645 144904694 -7632565 - MLT1A0 LTR MaLR -3 362 312 1 1690 894 118 29 22 chr5 144904786 144904925 -7632334 - B1_Mur4 SINE Alu 0 150 11 1 1690 272 286 26 0 chr5 144905005 144905082 -7632177 - PB1 SINE Alu -22 105 27 1 1690 250 282 71 0 chr5 144905557 144905642 -7631617 - Lx9 LINE L1 -263 7381 7291 1 1690 232 300 139 10 chr5 144905642 144905743 -7631516 - PB1D10 SINE Alu -1 116 3 1 1690 235 329 71 13 chr5 144905794 144905948 -7631311 - L2 LINE L2 -1686 1733 1571 1 1690 651 273 89 53 chr5 144906178 144906460 -7630799 + B4A SINE B4 1 292 0 1 1690 29 28 0 0 chr5 144906486 144906522 -7630737 + AT_rich Low_complexity Low_complexity 1 36 0 1 1690 1662 42 0 0 chr5 144906524 144906717 -7630542 - B2_Mm1a SINE B2 0 193 1 1 1690 492 333 45 0 chr5 144906739 144906871 -7630388 + RSINE1 SINE B4 13 150 -15 1 1690 198 0 0 0 chr5 144907283 144907305 -7629954 + (TG)n Simple_repeat Simple_repeat 2 23 0 1 1690 553 256 88 83 chr5 144907318 144907368 -7629891 - B4 SINE B4 -10 282 214 1 1690 773 124 16 16 chr5 144907368 144907381 -7629878 - B1_Mur4 SINE Alu -1 149 138 1 1690 216 0 0 0 chr5 144907381 144907405 -7629854 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1690 553 256 88 83 chr5 144907405 144907533 -7629726 - B4 SINE B4 -79 213 90 1 1690 325 336 90 0 chr5 144907530 144907652 -7629607 - B4A SINE B4 -50 242 110 1 1690 267 234 12 47 chr5 144908156 144908241 -7629018 + CT-rich Low_complexity Low_complexity 2 83 0 1 1690 232 282 129 0 chr5 144908725 144908810 -7628449 + L1MDb LINE L1 990 1085 -5324 1 1690 253 214 93 23 chr5 144908863 144908949 -7628310 + L1MDb LINE L1 4490 4581 -1825 1 1690 305 184 182 11 chr5 144908979 144909067 -7628192 - PB1D9 SINE Alu -17 103 1 1 1690 597 131 30 0 chr5 144909477 144909576 -7627683 - B1_Mur3 SINE Alu -1 148 47 1 1690 609 295 99 18 chr5 144909860 144910081 -7627178 - B4A SINE B4 -6 286 48 1 1690 180 0 0 0 chr5 144910334 144910354 -7626905 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1 1690 765 214 39 24 chr5 144911155 144911361 -7625898 - B3 SINE B2 -7 209 1 1 1690 311 0 26 0 chr5 144912556 144912595 -7624664 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1690 420 264 200 0 chr5 144912603 144912728 -7624531 - RSINE1 SINE B4 -13 152 3 1 1690 572 239 137 11 chr5 144913008 144913245 -7624014 + ORR1D1 LTR MaLR 1 261 -109 1 1690 303 218 188 0 chr5 144913200 144913301 -7623958 + B1F SINE Alu 30 149 0 1 1690 647 236 175 6 chr5 144913741 144913924 -7623335 + B3 SINE B2 1 214 -2 1 1690 325 257 14 0 chr5 144913980 144914050 -7623209 + ID4 SINE ID 1 71 -12 1 1690 217 241 182 11 chr5 144914745 144914833 -7622426 - RSINE1 SINE B4 -29 136 34 1 1690 228 256 33 109 chr5 144915260 144915276 -7621983 + PB1D7 SINE Alu 35 118 -1 1 1690 305 240 93 0 chr5 144915276 144915351 -7621908 + ID_B1 SINE B4 143 224 0 1 1690 307 336 105 9 chr5 144915807 144915921 -7621338 + PB1 SINE Alu 1 125 -2 1 1690 368 283 21 11 chr5 144916096 144916189 -7621070 - ID_B1 SINE B4 -21 203 110 1 1690 200 314 20 0 chr5 144916207 144916258 -7621001 + MIRm SINE MIR 97 148 -128 1 1690 237 305 108 12 chr5 144916317 144916400 -7620859 + PB1D10 SINE Alu 27 117 0 1 1690 352 194 28 0 chr5 144916763 144916835 -7620424 + B4A SINE B4 191 264 -28 1 1690 432 200 0 53 chr5 144918037 144918132 -7619127 + ID_B1 SINE B4 128 217 -7 1 1690 223 303 83 0 chr5 144918794 144918903 -7618356 - B4 SINE B4 -75 217 100 1 1690 599 219 66 0 chr5 144919068 144919205 -7618054 + B3A SINE B2 2 147 -51 1 1690 396 0 0 0 chr5 144919205 144919249 -7618010 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1690 457 241 105 29 chr5 144919276 144919458 -7617801 + B4 SINE B4 29 258 -34 1 1690 561 42 0 0 chr5 144919459 144919531 -7617728 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1690 22 0 0 0 chr5 144919859 144919881 -7617378 + AT_rich Low_complexity Low_complexity 1 22 0 1 1690 629 236 70 43 chr5 144919895 144920081 -7617178 - B3 SINE B2 0 216 26 1 1690 414 323 126 21 chr5 144920086 144920276 -7616983 + B4 SINE B4 80 289 -3 1 1690 243 88 0 0 chr5 144920306 144920340 -7616919 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1690 471 257 8 34 chr5 144920882 144920999 -7616260 - PB1D9 SINE Alu -6 114 1 1 1690 914 149 13 26 chr5 144921065 144921217 -7616042 - B1_Mur4 SINE Alu 0 150 1 1 1690 364 306 24 0 chr5 144921265 144921350 -7615909 + PB1D10 SINE Alu 30 116 -1 1 1690 394 295 97 65 chr5 144921750 144921935 -7615324 + ID_B1 SINE B4 16 206 -18 1 1690 221 191 43 14 chr5 144922526 144922556 -7614703 + T-rich Low_complexity Low_complexity 47 75 0 1 1690 1237 103 49 5 chr5 144922556 144922570 -7614689 - B2_Mm2 SINE B2 0 195 182 1 1690 1265 20 0 20 chr5 144922570 144922720 -7614539 - B1_Mus2 SINE Alu 0 147 1 1 1690 1237 103 49 5 chr5 144922720 144922890 -7614369 - B2_Mm2 SINE B2 -14 181 3 1 1690 221 191 43 14 chr5 144922890 144922928 -7614331 + T-rich Low_complexity Low_complexity 6 46 0 1 1690 373 210 49 12 chr5 144922961 144923043 -7614216 - ZP3AR Satellite Satellite -91 121 37 1 1690 384 77 0 0 chr5 144923894 144923946 -7613313 + (TC)n Simple_repeat Simple_repeat 2 53 0 1 1690 495 0 0 0 chr5 144923946 144924001 -7613258 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1690 480 35 0 0 chr5 144924496 144924554 -7612705 + (TTTTC)n Simple_repeat Simple_repeat 3 60 0 1 1690 1225 48 0 13 chr5 144924570 144924719 -7612540 - B1_Mus2 SINE Alu 0 147 1 1 1690 524 216 49 21 chr5 144925114 144925256 -7612003 + B3 SINE B2 71 216 0 1 1690 501 281 107 20 chr5 144925855 144926004 -7611255 - RSINE1 SINE B4 0 165 4 1 1690 1263 106 21 11 chr5 144926160 144926351 -7610908 - B2_Mm1t SINE B2 0 193 1 1 1690 715 278 9 32 chr5 144926437 144926653 -7610606 + B3 SINE B2 1 211 -5 1 1690 220 266 186 32 chr5 144927409 144927537 -7609722 + L2b LINE L2 3249 3378 -9 1 1690 425 262 98 49 chr5 144927685 144927910 -7609349 - L1MEg LINE L1 -4064 2085 1850 1 1690 273 57 0 0 chr5 144927924 144927959 -7609300 + (CACG)n Simple_repeat Simple_repeat 1 35 0 1 1690 516 161 26 80 chr5 144928164 144928355 -7608904 - L1MEg LINE L1 -4648 1501 1317 1 1690 414 175 68 22 chr5 144928389 144928677 -7608582 + (GTGTG)n Simple_repeat Simple_repeat 1 301 0 1 1690 225 171 51 58 chr5 144928657 144928794 -7608465 + (GTATG)n Simple_repeat Simple_repeat 5 140 0 1 1690 348 158 64 41 chr5 144928754 144928975 -7608284 + (GTGTG)n Simple_repeat Simple_repeat 1 226 0 1 1690 330 298 30 8 chr5 144928987 144929119 -7608140 - L1MEg LINE L1 -4866 1253 1119 1 1690 3666 56 30 0 chr5 144929202 144929665 -7607594 - L1Md_F3 LINE L1 0 6584 6108 1 1690 472 198 39 22 chr5 144929753 144929934 -7607325 + RMER17C LTR ERVK 91 274 -136 1 1690 222 62 0 0 chr5 144929942 144929974 -7607285 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 1 1690 715 248 20 7 chr5 144931403 144931549 -7605710 + B1_Mur1 SINE Alu 2 149 0 1 1690 769 243 31 16 chr5 144931591 144931783 -7605476 + B3 SINE B2 9 203 -13 1 1690 489 222 0 63 chr5 144931984 144932095 -7605164 + PB1D7 SINE Alu 5 109 -11 1 1690 611 297 0 63 chr5 144932810 144932968 -7604291 + B4A SINE B4 49 196 -96 1 1690 414 0 0 0 chr5 144932968 144933014 -7604245 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1690 405 58 0 0 chr5 144933027 144933079 -7604180 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1690 294 247 22 56 chr5 144933403 144933493 -7603766 + RSINE1 SINE B4 25 111 -54 1 1690 1197 44 0 0 chr5 144933901 144934038 -7603221 + B1_Mm SINE Alu 3 139 -8 1 1690 37 0 0 0 chr5 144934151 144934188 -7603071 + AT_rich Low_complexity Low_complexity 1 37 0 1 1690 404 104 15 0 chr5 144937444 144937511 -7599748 + (TG)n Simple_repeat Simple_repeat 1 68 0 1 1690 547 316 69 23 chr5 144937527 144937789 -7599470 - B4A SINE B4 -18 274 1 1 1690 238 26 25 25 chr5 144938095 144938135 -7599124 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1 1690 1237 54 0 0 chr5 144938141 144938288 -7598971 - B1_Mus1 SINE Alu 0 148 2 1 1690 763 227 106 17 chr5 144938301 144938480 -7598779 - B3 SINE B2 -21 195 1 1 1690 498 245 10 0 chr5 144938480 144938568 -7598691 - B4A SINE B4 -203 89 1 1 1690 218 294 102 56 chr5 144938692 144938800 -7598459 - B1F SINE Alu -1 148 36 1 1690 248 249 194 51 chr5 144939386 144939517 -7597742 - L1MDa LINE L1 -2930 3607 3479 1 1690 1125 156 53 19 chr5 144939517 144939726 -7597533 - B3 SINE B2 0 216 1 1 1690 248 249 194 51 chr5 144939726 144939945 -7597314 - L1MDa LINE L1 -3059 3478 3207 1 1690 538 251 46 40 chr5 144939970 144940123 -7597136 - RSINE1 SINE B4 -7 158 6 1 1690 306 0 0 0 chr5 144940156 144940190 -7597069 + (TG)n Simple_repeat Simple_repeat 2 35 0 1 1690 321 313 12 0 chr5 144940193 144940276 -7596983 - RSINE1 SINE B4 -14 151 68 1 1690 331 325 43 9 chr5 144940370 144940485 -7596774 - B4A SINE B4 -169 123 5 1 1690 1138 49 28 0 chr5 144940776 144940919 -7596340 + B1_Mm SINE Alu 1 147 0 1 1690 594 117 29 10 chr5 144940936 144941040 -7596219 + B1_Mur4 SINE Alu 31 136 -14 1 1690 429 178 14 0 chr5 144941065 144941138 -7596121 + ID4 SINE ID 1 74 -9 1 1690 372 233 56 0 chr5 144941460 144941550 -7595709 + ID_B1 SINE B4 67 161 -63 1 1690 451 280 71 26 chr5 144941600 144941754 -7595505 + RSINE1 SINE B4 3 163 -2 1 1690 540 45 0 0 chr5 144941760 144941827 -7595432 + (TA)n Simple_repeat Simple_repeat 1 67 0 1 1690 259 262 14 0 chr5 144942012 144942093 -7595166 - L1MDa LINE L1 -4702 1931 1851 1 1690 238 226 33 67 chr5 144942621 144942711 -7594548 + B1F1 SINE Alu 11 97 -52 1 1690 547 196 10 19 chr5 144942705 144942809 -7594450 + PB1D9 SINE Alu 10 112 -8 1 1690 351 247 188 28 chr5 144942809 144942845 -7594414 + B4 SINE B4 95 240 -52 1 1690 1180 89 9 147 chr5 144942845 144942885 -7594374 + B2_Mm1t SINE B2 1 41 -152 1 1690 1151 49 28 0 chr5 144942885 144943028 -7594231 + B1_Mus2 SINE Alu 1 147 0 1 1690 1180 89 9 147 chr5 144943028 144943211 -7594048 + B2_Mm1t SINE B2 42 193 0 1 1690 1203 55 0 0 chr5 144943228 144943374 -7593885 + B1_Mus2 SINE Alu 2 147 0 1 1690 462 265 58 10 chr5 144943383 144943486 -7593773 + B3 SINE B2 27 134 -82 1 1690 226 289 22 98 chr5 144943799 144943891 -7593368 - PB1D9 SINE Alu -7 113 29 1 1690 675 204 65 7 chr5 144944480 144944633 -7592626 - ZP3AR Satellite Satellite -14 198 37 1 1690 316 276 12 116 chr5 144944668 144944832 -7592427 - B1_Mus1 SINE Alu 0 148 2 1 1690 183 80 0 0 chr5 144946125 144946150 -7591109 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 1 1690 23 0 0 0 chr5 144947354 144947377 -7589882 + AT_rich Low_complexity Low_complexity 1 23 0 1 1690 784 124 139 0 chr5 144947864 144947993 -7589266 - B1_Mus2 SINE Alu 0 147 1 1 1690 34 55 0 0 chr5 144949019 144949074 -7588185 + AT_rich Low_complexity Low_complexity 1 55 0 1 1690 594 276 92 65 chr5 144949354 144949583 -7587676 + B4 SINE B4 49 283 -9 1 1690 354 266 17 52 chr5 144949642 144949757 -7587502 + PB1D7 SINE Alu 3 113 -7 1 1690 363 292 60 26 chr5 144949997 144950113 -7587146 + PB1D7 SINE Alu 1 120 0 1 1690 518 203 17 8 chr5 144950343 144950462 -7586797 + RSINE1 SINE B4 5 124 -41 1 1690 397 233 0 0 chr5 144950534 144950607 -7586652 - RSINE1 SINE B4 -25 140 68 1 1690 249 33 0 0 chr5 144952408 144952438 -7584821 + (CAG)n Simple_repeat Simple_repeat 1 30 0 1 1690 383 221 47 19 chr5 144952654 144952760 -7584499 - PB1D10 SINE Alu 0 117 9 1 1690 637 239 42 36 chr5 144952680 144952845 -7584414 - ID_B1 SINE B4 -57 167 2 1 1690 579 15 0 0 chr5 144953286 144953354 -7583905 + (TC)n Simple_repeat Simple_repeat 1 68 0 1 1690 213 269 86 111 chr5 144953868 144953985 -7583274 - B1F SINE Alu -14 135 22 1 1690 588 266 96 0 chr5 144954677 144954854 -7582405 - ID_B1 SINE B4 -26 198 5 1 1690 541 191 63 9 chr5 144956056 144956167 -7581092 - ID_B1 SINE B4 -10 214 98 1 1690 473 196 21 0 chr5 144956207 144956304 -7580955 - PB1D10 SINE Alu 0 117 19 1 1690 274 381 0 0 chr5 144956227 144956324 -7580935 - ID_B1 SINE B4 -48 176 80 1 1690 350 258 63 55 chr5 144957655 144957795 -7579464 - PB1D10 SINE Alu -1 148 2 1 1690 437 281 17 34 chr5 144957795 144957826 -7579433 - ID SINE ID -145 79 51 1 1690 366 250 54 27 chr5 144957827 144957938 -7579321 - PB1D10 SINE Alu -3 114 1 1 1690 638 200 15 15 chr5 144957944 144958076 -7579183 - ID_B1 SINE B4 -9 215 84 1 1690 528 175 134 35 chr5 144958266 144958408 -7578851 - URR1B DNA MER1_type -11 214 59 1 1690 433 265 248 50 chr5 144961175 144961417 -7575842 - B4 SINE B4 0 292 3 1 1690 306 277 95 38 chr5 144962867 144962972 -7574287 - B1F1 SINE Alu 0 149 39 1 1690 227 259 17 33 chr5 144962922 144962982 -7574277 - MT2B2 LTR ERVL -340 244 186 1 1690 22 0 0 0 chr5 144963026 144963048 -7574211 + AT_rich Low_complexity Low_complexity 1 22 0 1 1690 1047 70 0 0 chr5 144963056 144963185 -7574074 + B1_Mus1 SINE Alu 1 129 -19 1 1690 705 272 15 59 chr5 144963202 144963405 -7573854 - B3A SINE B2 -3 195 2 1 1690 491 298 52 35 chr5 144963442 144963616 -7573643 - B3A SINE B2 -16 182 6 1 1690 379 284 0 0 chr5 144963657 144963752 -7573507 + B4 SINE B4 5 99 -193 1 1690 601 214 93 0 chr5 144963751 144963892 -7573367 + B3A SINE B2 8 160 -38 1 1690 203 103 26 0 chr5 144963892 144963931 -7573328 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1690 429 239 119 57 chr5 144963931 144963966 -7573293 + B2_Mm2 SINE B2 156 194 -1 1 1690 238 258 41 21 chr5 144963961 144964065 -7573194 + B4 SINE B4 81 163 -129 1 1690 318 50 0 0 chr5 144964094 144964134 -7573125 + (CA)n Simple_repeat Simple_repeat 2 41 0 1 1690 369 213 62 31 chr5 144964625 144964722 -7572537 - PB1D9 SINE Alu -16 104 5 1 1691 261 306 12 12 chr5 144966216 144966302 -7570957 - ID_B1 SINE B4 -112 112 27 1 1691 1235 40 0 13 chr5 144966310 144966460 -7570799 - B1_Mus1 SINE Alu 0 148 1 1 1691 362 206 58 116 chr5 144967554 144967675 -7569584 + ID_B1 SINE B4 1 114 -110 1 1691 477 76 0 0 chr5 144967805 144967871 -7569388 + B1_Mur4 SINE Alu 74 139 -11 1 1691 255 61 0 0 chr5 144967873 144967906 -7569353 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1 1691 495 264 41 0 chr5 144967959 144968080 -7569179 + B1F SINE Alu 23 148 -1 1 1691 359 261 54 40 chr5 144969304 144969450 -7567809 + B1F SINE Alu 1 148 -1 1 1691 316 256 277 15 chr5 144969744 144969946 -7567313 + MTE2b LTR MaLR 119 373 -6 1 1691 1078 49 4 55 chr5 144969973 144970230 -7567029 + (TTCC)n Simple_repeat Simple_repeat 1 243 0 1 1691 700 253 124 67 chr5 144970233 144970285 -7566974 - B4 SINE B4 -10 282 237 1 1691 188 35 35 0 chr5 144970285 144970314 -7566945 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1 1691 700 253 124 67 chr5 144970314 144970528 -7566731 - B4 SINE B4 -56 236 1 1 1691 222 267 25 74 chr5 144971279 144971360 -7565899 + MIRc SINE MIR 68 144 -124 1 1691 641 259 63 0 chr5 144971449 144971607 -7565652 + ID_B1 SINE B4 2 169 -55 1 1691 344 283 176 2 chr5 144971616 144971719 -7565540 - B1F SINE Alu -29 118 1 1 1691 828 244 29 0 chr5 144971734 144971906 -7565353 - ID_B1 SINE B4 -3 221 45 1 1691 385 234 78 25 chr5 144971955 144972090 -7565169 + MTD LTR MaLR 240 397 -22 1 1691 236 255 0 0 chr5 144972117 144972168 -7565091 - B1F SINE Alu -5 144 94 1 1691 746 162 29 0 chr5 144972682 144972818 -7564441 - B3 SINE B2 -76 140 1 1 1691 300 211 84 0 chr5 144972963 144973034 -7564225 - ID_B1 SINE B4 -5 219 143 1 1691 677 92 352 28 chr5 144973041 144973186 -7564073 - B2_Mm2 SINE B2 -1 194 3 1 1691 1362 60 0 0 chr5 144973623 144973874 -7563385 + (TG)n Simple_repeat Simple_repeat 1 251 0 1 1691 453 244 160 85 chr5 144973887 144974075 -7563184 - B4 SINE B4 -83 209 8 1 1691 613 303 0 14 chr5 144974148 144974295 -7562964 - RSINE1 SINE B4 -18 147 3 1 1691 616 270 205 0 chr5 144974640 144974825 -7562434 + ID_B1 SINE B4 2 224 0 1 1691 338 253 35 0 chr5 144975687 144975774 -7561485 - L1M2 LINE L1 -782 5518 5429 1 1691 195 139 0 0 chr5 144975774 144975810 -7561449 + (TG)n Simple_repeat Simple_repeat 2 37 0 1 1691 306 164 0 0 chr5 144976514 144976569 -7560690 + (CCCA)n Simple_repeat Simple_repeat 2 56 0 1 1691 614 143 8 0 chr5 144976959 144977092 -7560167 + GA-rich Low_complexity Low_complexity 1 134 0 1 1691 219 36 0 0 chr5 144978641 144978669 -7558590 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1 1691 420 216 14 0 chr5 144978670 144978744 -7558515 - ID4_ SINE ID -8 75 1 1 1691 1188 61 0 7 chr5 144978774 144978922 -7558337 - B1_Mus2 SINE Alu 0 147 1 1 1691 705 299 46 18 chr5 144978926 144979144 -7558115 - ID_B1 SINE B4 0 224 1 1 1691 315 0 0 0 chr5 144979338 144979373 -7557886 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1691 702 228 13 39 chr5 144979834 144979989 -7557270 - ID_B1 SINE B4 -3 221 71 1 1691 445 210 138 48 chr5 144979990 144980135 -7557124 + ID_B1 SINE B4 36 193 -31 1 1691 248 286 101 23 chr5 144980787 144980916 -7556343 + YREP_Mm Unknown Unknown 156 294 -1518 1 1691 540 206 70 23 chr5 144980807 144980936 -7556323 - ID_B1 SINE B4 -3 221 87 1 1691 481 259 0 9 chr5 144981113 144981222 -7556037 - PB1D10 SINE Alu -9 108 1 1 1691 405 265 101 70 chr5 144981251 144981409 -7555850 + RSINE1 SINE B4 2 164 -1 1 1691 973 95 14 14 chr5 144981450 144981589 -7555670 + B1_Mus2 SINE Alu 1 139 -8 1 1691 234 0 0 0 chr5 144981589 144981615 -7555644 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1691 1710 175 178 29 chr5 144981617 144982000 -7555259 + RMER10A LTR ERVL 3 442 0 1 1691 249 314 70 0 chr5 144982001 144982087 -7555172 + PB1D10 SINE Alu 16 107 -10 1 1691 380 278 17 34 chr5 144982710 144982829 -7554430 + PB1D10 SINE Alu 1 117 0 1 1691 362 177 0 0 chr5 144982844 144982906 -7554353 + B4 SINE B4 6 67 -225 1 1691 604 277 6 25 chr5 144982951 144983114 -7554145 + RSINE1 SINE B4 4 163 -2 1 1691 637 282 126 15 chr5 144983146 144983339 -7553920 + B4 SINE B4 85 280 -12 1 1691 742 60 0 10 chr5 144983380 144983481 -7553778 + B2_Mm2 SINE B2 2 101 -94 1 1691 279 0 0 0 chr5 144983507 144983538 -7553721 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1691 576 194 82 29 chr5 144984889 144985087 -7552172 - B3 SINE B2 0 195 1 1 1691 264 300 91 86 chr5 144985095 144985122 -7552137 - B2_Mm1t SINE B2 -2 191 5 1 1691 632 216 44 38 chr5 144985122 144985281 -7551978 - RSINE1 SINE B4 0 165 6 1 1691 387 345 44 11 chr5 144985465 144985647 -7551612 - B4A SINE B4 -104 188 1 1 1691 353 289 42 34 chr5 144985726 144985844 -7551415 - RSINE1 SINE B4 -42 123 5 1 1691 607 255 28 0 chr5 144985856 144985997 -7551262 - B1F SINE Alu -1 148 4 1 1691 510 289 7 26 chr5 144985864 144986017 -7551242 - ID_B1 SINE B4 -9 215 66 1 1691 325 243 0 0 chr5 144986244 144986314 -7550945 + MTE2b LTR MaLR 255 324 -55 1 1691 201 94 0 0 chr5 144986418 144986450 -7550809 + (G)n Simple_repeat Simple_repeat 1 32 0 1 1691 626 179 18 0 chr5 144986526 144986638 -7550621 - B1_Mur2 SINE Alu 0 149 36 1 1691 753 42 185 92 chr5 144986640 144986770 -7550489 - B1_Mus2 SINE Alu -5 142 1 1 1691 348 83 0 0 chr5 144986790 144986838 -7550421 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1 1691 589 253 125 26 chr5 144986989 144987293 -7549966 - RMER17C LTR ERVK 0 410 77 1 1691 1435 69 26 0 chr5 144987645 144987834 -7549425 - B2_Mm2 SINE B2 0 195 2 1 1691 360 306 11 135 chr5 144987869 144988029 -7549230 - B4A SINE B4 -129 163 26 1 1691 2294 112 25 3 chr5 144988029 144988351 -7548908 + ORR1A4 LTR MaLR 1 329 0 1 1691 360 306 11 135 chr5 144988351 144988375 -7548884 - B4A SINE B4 -267 25 2 1 1691 841 272 79 0 chr5 144988375 144988591 -7548668 - B4A SINE B4 -58 234 1 1 1691 180 0 0 0 chr5 144988885 144988905 -7548354 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1691 457 164 4 2 chr5 144989000 144989088 -7548171 + B2_Mm2 SINE B2 21 107 -88 1 1691 180 0 0 0 chr5 144989088 144989108 -7548151 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1 1691 1841 149 69 9 chr5 144989189 144989521 -7547738 + ORR1B2 LTR MaLR 16 367 0 1 1691 444 161 16 16 chr5 144989775 144989908 -7547351 + (TG)n Simple_repeat Simple_repeat 1 133 0 1 1691 2811 62 8 3 chr5 144989939 144990330 -7546929 + MTB LTR MaLR 1 393 -7 1 1691 204 40 0 0 chr5 144990330 144990355 -7546904 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 1 1691 1218 48 7 0 chr5 144990366 144990512 -7546747 - B1_Mus2 SINE Alu 0 147 1 1 1691 722 11 11 0 chr5 144990523 144990610 -7546649 + (TTTC)n Simple_repeat Simple_repeat 3 90 0 1 1691 351 65 0 0 chr5 144990609 144990655 -7546604 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 1 1691 618 296 82 26 chr5 144990655 144990887 -7546372 - B4A SINE B4 -47 245 1 1 1691 398 248 9 28 chr5 144990899 144991007 -7546252 - ID_B1 SINE B4 -8 216 111 1 1691 1691 162 219 33 chr5 144991102 144991491 -7545768 - RMER6B LTR ERVK 0 461 1 1 1691 750 265 112 38 chr5 144991518 144991785 -7545474 - B4A SINE B4 -4 288 2 1 1691 1493 57 8 0 chr5 144991874 144992125 -7545134 - ZP3AR Satellite Satellite -21 253 1 1 1691 234 0 0 0 chr5 144992277 144992303 -7544956 + (T)n Simple_repeat Simple_repeat 1 26 0 1 1691 263 229 16 16 chr5 144992543 144992605 -7544654 + B4A SINE B4 85 146 -146 1 1691 336 205 12 82 chr5 144992550 144992618 -7544641 + PB1D10 SINE Alu 7 70 -47 1 1691 486 0 0 0 chr5 144992618 144992672 -7544587 + (CCCTAA)n Simple_repeat Simple_repeat 5 58 0 1 1691 336 205 12 82 chr5 144992672 144992688 -7544571 + PB1D10 SINE Alu 71 85 -32 1 1691 405 58 0 0 chr5 144992710 144992762 -7544497 + (TC)n Simple_repeat Simple_repeat 1 52 0 1 1691 955 68 82 15 chr5 144992763 144992898 -7544361 - B1_Mur4 SINE Alu -6 144 1 1 1691 1310 73 85 0 chr5 144992909 144992926 -7544333 - B2_Mm2 SINE B2 -3 192 176 1 1691 252 0 0 0 chr5 144992926 144992954 -7544305 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1 1691 1310 73 85 0 chr5 144992954 144993113 -7544146 - B2_Mm2 SINE B2 -20 175 2 1 1691 1620 52 0 0 chr5 144993142 144993335 -7543924 + B2_Mm1a SINE B2 1 193 0 1 1691 325 285 42 140 chr5 144993354 144993640 -7543619 + ORR1E LTR MaLR 97 354 -5 1 1691 294 256 102 91 chr5 144993797 144993958 -7543301 + RMER20B LTR ERVK 2 161 -355 1 1691 465 121 0 0 chr5 144994354 144994437 -7542822 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 1691 937 255 48 36 chr5 144994484 144994736 -7542523 - B4A SINE B4 0 292 38 1 1691 1179 55 7 0 chr5 144994815 144994961 -7542298 + B1_Mus1 SINE Alu 2 148 0 1 1691 21 0 0 0 chr5 144994961 144994982 -7542277 + AT_rich Low_complexity Low_complexity 1 21 0 1 1691 1547 178 58 77 chr5 144995177 144995555 -7541704 + MTE2a LTR MaLR 8 378 -1 1 1691 1406 175 141 16 chr5 144995844 144996163 -7541096 - ORR1C2 LTR MaLR -2 382 24 1 1691 351 0 0 0 chr5 144996165 144996204 -7541055 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1 1691 358 101 2 24 chr5 144996213 144996287 -7540972 - B2_Mm2 SINE B2 -74 124 46 1 1691 1436 70 43 5 chr5 144996344 144996531 -7540728 - B2_Mm2 SINE B2 0 195 2 1 1691 936 112 7 0 chr5 144996546 144996689 -7540570 - B2_Mm2 SINE B2 -50 145 2 1 1691 1067 108 34 93 chr5 144996929 144997134 -7540125 + B2_Mm2 SINE B2 3 195 0 1 1691 1094 101 6 0 chr5 144997163 144997322 -7539937 + B2_Mm1t SINE B2 1 160 -33 1 1691 297 51 0 0 chr5 144997322 144997361 -7539898 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1 1691 946 216 16 0 chr5 144997387 144997572 -7539687 - B3 SINE B2 -28 188 1 1 1691 1239 71 5 16 chr5 144997706 144997892 -7539367 - B2_Mm2 SINE B2 -1 194 11 1 1691 294 293 40 0 chr5 144997902 144997977 -7539282 + PB1D7 SINE Alu 6 83 -37 1 1691 390 197 0 0 chr5 144997914 144997980 -7539279 + ID_B1 SINE B4 99 164 -60 1 1691 261 0 0 0 chr5 144998193 144998222 -7539037 + (TG)n Simple_repeat Simple_repeat 2 30 0 1 1691 641 115 257 0 chr5 144998239 144998352 -7538907 - B1_Mur4 SINE Alu -8 142 1 1 1691 664 54 0 21 chr5 144998394 144998478 -7538781 + B1_Mus2 SINE Alu 55 138 -9 1 1691 186 71 0 0 chr5 144998478 144998506 -7538753 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1691 530 347 8 12 chr5 144998518 144998725 -7538534 - B3A SINE B2 -8 208 1 1 1691 874 255 102 31 chr5 144998956 144999211 -7538048 - B4 SINE B4 -19 273 1 1 1691 771 69 0 0 chr5 144999293 144999395 -7537864 + (TTCC)n Simple_repeat Simple_repeat 2 103 0 1 1691 628 182 135 0 chr5 144999395 144999512 -7537747 - B1_Mur2 SINE Alu -13 136 3 1 1691 387 333 0 10 chr5 144999648 144999751 -7537508 - PB1D10 SINE Alu -12 105 4 1 1691 269 271 219 0 chr5 144999904 145000000 -7537259 - B4A SINE B4 -61 231 115 1 1691 379 305 94 22 chr5 145000142 145000321 -7536938 + LTR29 LTR ERV1 128 319 -303 1 1691 761 224 187 9 chr5 145000321 145000551 -7536708 + B4 SINE B4 1 271 -21 2 1691 326 242 10 59 chr5 145000574 145000675 -7536584 + RMER10A LTR ERVL 1 96 -346 3 1691 432 0 0 0 chr5 145000699 145000747 -7536512 + (CA)n Simple_repeat Simple_repeat 1 48 0 4 1691 1175 35 7 0 chr5 145001141 145001286 -7535973 - B1_Mus2 SINE Alu 0 147 2 5 1691 1262 195 56 148 chr5 145001298 145001518 -7535741 - MTD LTR MaLR -14 405 211 6 1691 1212 34 0 0 chr5 145001518 145001664 -7535595 - B1_Mus2 SINE Alu -1 146 1 7 1691 1262 195 56 148 chr5 145001664 145001678 -7535581 - MTD LTR MaLR -209 210 210 8 1691 645 14 0 0 chr5 145001678 145001752 -7535507 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 9 1691 1242 78 67 0 chr5 145001752 145001931 -7535328 - B2_Mm2 SINE B2 -3 192 2 1 1691 1262 195 56 148 chr5 145001931 145002086 -7535173 - MTD LTR MaLR -209 210 51 6 1691 782 99 50 0 chr5 145002062 145002183 -7535076 - B1_Mur4 SINE Alu -5 145 19 1 1691 235 290 78 20 chr5 145002204 145002306 -7534953 - ORR1E LTR MaLR -172 187 80 1 1691 609 244 111 0 chr5 145002355 145002535 -7534724 - ID_B1 SINE B4 -24 200 1 1 1691 218 204 16 74 chr5 145002546 145002668 -7534591 + (TAAA)n Simple_repeat Simple_repeat 2 116 0 1 1691 469 202 44 88 chr5 145002688 145002824 -7534435 - RSINE1 SINE B4 -33 132 3 1 1691 651 286 104 5 chr5 145002824 145003141 -7534118 + MTEb LTR MaLR 15 379 0 1 1691 459 239 239 0 chr5 145003750 145003917 -7533342 - ID_B1 SINE B4 -13 211 5 1 1691 198 0 0 0 chr5 145004034 145004056 -7533203 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1 1691 764 51 0 0 chr5 145004073 145004171 -7533088 - B2_Mm2 SINE B2 -97 98 1 1 1691 229 26 53 0 chr5 145004180 145004218 -7533041 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 2 1691 1084 102 0 0 chr5 145004218 145004365 -7532894 - B1_Mus2 SINE Alu 0 147 1 2 1691 198 0 0 0 chr5 145004379 145004401 -7532858 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2 1691 478 77 0 37 chr5 145004401 145004472 -7532787 - L1Md_F2 LINE L1 -15 6567 6497 2 1691 446 181 0 9 chr5 145004513 145004619 -7532640 + (TG)n Simple_repeat Simple_repeat 1 105 0 2 1691 522 202 6 11 chr5 145004647 145004827 -7532432 + (TG)n Simple_repeat Simple_repeat 2 180 0 2 1691 244 302 84 9 chr5 145004830 145004937 -7532322 - PB1D10 SINE Alu -1 116 2 2 1691 228 35 0 0 chr5 145005629 145005658 -7531601 + (TG)n Simple_repeat Simple_repeat 2 30 0 2 1691 522 246 21 86 chr5 145005729 145005764 -7531495 - B4A SINE B4 -116 176 146 2 1691 1394 209 79 6 chr5 145005764 145006106 -7531153 - ORR1D2 LTR MaLR -3 367 1 2 1691 522 246 21 86 chr5 145006106 145006257 -7531002 - B4A SINE B4 -147 145 2 2 1691 244 276 53 0 chr5 145006664 145006740 -7530519 - ID4 SINE ID -3 80 1 2 1691 1397 82 12 0 chr5 145006699 145006970 -7530289 - ZP3AR Satellite Satellite -21 274 1 3 1691 659 182 147 0 chr5 145006982 145007152 -7530107 - B2_Mm2 SINE B2 0 195 1 3 1691 399 278 19 0 chr5 145007176 145007284 -7529975 + B4 SINE B4 15 124 -168 3 1691 324 322 0 76 chr5 145007492 145007623 -7529636 - B3A SINE B2 -77 121 1 3 1691 410 266 34 36 chr5 145007643 145007836 -7529423 - B4A SINE B4 -62 230 1 3 1691 280 217 16 16 chr5 145008046 145008107 -7529152 + ID4_ SINE ID 9 69 -14 3 1691 1975 184 74 30 chr5 145008159 145008618 -7528641 - RLTR11A2 LTR ERVK -48 479 1 3 1691 680 244 127 43 chr5 145008704 145008957 -7528302 - B4 SINE B4 -18 274 1 3 1691 280 298 112 70 chr5 145009568 145009679 -7527580 + CYRA11_Mm Unknown Y-chromosome 65 185 -432 3 1691 883 158 85 0 chr5 145009679 145009844 -7527415 - URR1A DNA MER1_type -2 224 46 3 1691 573 274 36 6 chr5 145009847 145010012 -7527247 - ID_B1 SINE B4 -54 170 1 4 1691 541 216 27 9 chr5 145010189 145010301 -7526958 + B1F1 SINE Alu 28 141 -8 4 1691 261 0 0 0 chr5 145010494 145010523 -7526736 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4 1691 734 224 41 6 chr5 145010854 145011025 -7526234 - B3 SINE B2 0 216 40 4 1691 517 184 114 0 chr5 145012175 145012289 -7524970 + ID_B1 SINE B4 46 172 -52 4 1691 387 263 0 20 chr5 145012209 145012310 -7524949 + PB1D10 SINE Alu 12 110 -7 4 1691 973 200 115 29 chr5 145012451 145012729 -7524530 - ORR1D2 LTR MaLR -1 369 68 4 1691 788 204 131 28 chr5 145012753 145013005 -7524254 - ORR1D1 LTR MaLR 0 374 97 4 1691 208 362 0 0 chr5 145013224 145013304 -7523955 + L2 LINE L2 1448 1527 -1892 4 1691 215 125 25 0 chr5 145013622 145013662 -7523597 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1691 775 226 149 9 chr5 145013687 145013901 -7523358 - B4A SINE B4 0 292 49 5 1691 270 207 0 0 chr5 145013937 145013995 -7523264 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 5 1691 1243 64 6 0 chr5 145014003 145014174 -7523085 - B2_Mm2 SINE B2 -23 172 1 5 1691 231 36 0 0 chr5 145014179 145014207 -7523052 + (T)n Simple_repeat Simple_repeat 1 28 0 5 1691 388 218 0 113 chr5 145014415 145014431 -7522828 - PB1D10 SINE Alu -7 110 67 5 1691 687 249 11 53 chr5 145014431 145014463 -7522796 - ID_B1 SINE B4 -45 179 149 5 1691 1251 88 33 5 chr5 145014463 145014647 -7522612 - B2_Mm2 SINE B2 -5 190 2 5 1691 388 218 0 113 chr5 145014647 145014722 -7522537 - PB1D10 SINE Alu -51 66 1 5 1691 687 249 11 53 chr5 145014722 145014801 -7522458 - ID_B1 SINE B4 -76 148 1 5 1691 258 288 0 0 chr5 145014809 145014868 -7522391 - PB1D10 SINE Alu -6 111 53 5 1691 297 0 0 0 chr5 145014895 145014928 -7522331 + (CA)n Simple_repeat Simple_repeat 2 34 0 5 1691 448 267 116 0 chr5 145015000 145015146 -7522113 - ID_B1 SINE B4 -6 218 56 5 1691 271 259 92 28 chr5 145015567 145015687 -7521572 + PB1D10 SINE Alu 5 129 -20 6 1691 393 294 62 31 chr5 145015687 145015817 -7521442 + RSINE1 SINE B4 25 158 -7 6 1691 28 0 0 0 chr5 145016104 145016132 -7521127 + GC_rich Low_complexity Low_complexity 1 28 0 6 1691 206 200 0 0 chr5 145016155 145016190 -7521069 + (CCG)n Simple_repeat Simple_repeat 1 35 0 6 1691 27 0 0 0 chr5 145016219 145016246 -7521013 + GC_rich Low_complexity Low_complexity 1 27 0 6 1691 200 308 0 0 chr5 145016587 145016639 -7520620 + G-rich Low_complexity Low_complexity 120 171 0 6 1691 252 295 57 9 chr5 145020889 145020995 -7516264 - MER46C DNA MER2_type -107 231 121 6 1691 273 232 120 60 chr5 145020997 145021008 -7516251 + ID_B1 SINE B4 81 218 -3 6 1691 495 164 160 25 chr5 145021008 145021127 -7516132 + B1_Mur2 SINE Alu 9 143 -6 6 1691 551 211 0 0 chr5 145022033 145022137 -7515122 - ID_B1 SINE B4 -3 221 118 6 1691 492 215 18 18 chr5 145022524 145022633 -7514626 + ID_B1 SINE B4 77 185 -39 7 1691 3401 15 2 0 chr5 145023407 145023802 -7513457 - MTA_Mm LTR MaLR 0 396 1 7 1691 195 232 14 28 chr5 145024147 145024218 -7513041 + MIRm SINE MIR 3 72 -204 7 1691 284 302 15 85 chr5 145024332 145024462 -7512797 - RSINE1 SINE B4 -43 122 2 7 1691 294 95 0 0 chr5 145024631 145024673 -7512586 + (TG)n Simple_repeat Simple_repeat 1 42 0 7 1691 447 35 0 0 chr5 145024673 145024729 -7512530 + (GA)n Simple_repeat Simple_repeat 1 57 0 7 1691 27 29 0 0 chr5 145026332 145026366 -7510893 + AT_rich Low_complexity Low_complexity 1 34 0 7 1691 24 0 0 0 chr5 145026539 145026563 -7510696 + AT_rich Low_complexity Low_complexity 1 24 0 7 1691 257 291 90 52 chr5 145027045 145027179 -7510080 - B4A SINE B4 -125 167 29 7 1691 488 241 99 25 chr5 145027610 145027772 -7509487 + B3A SINE B2 1 174 -24 7 1691 692 83 161 37 chr5 145028117 145028279 -7508980 - RMER17B LTR ERVK -500 458 277 8 1691 198 0 0 0 chr5 145029725 145029747 -7507512 + (GAGAA)n Simple_repeat Simple_repeat 2 23 0 8 1691 710 230 121 40 chr5 145029795 145029968 -7507291 + ID_B1 SINE B4 5 201 -23 8 1691 1164 86 92 0 chr5 145029968 145030142 -7507117 - B2_Mm2 SINE B2 -4 191 2 8 1691 710 230 121 40 chr5 145030142 145030167 -7507092 + ID_B1 SINE B4 202 219 -5 8 1691 283 300 58 29 chr5 145030305 145030408 -7506851 + Tigger5 DNA MER2_type 50 155 -2251 8 1691 258 260 13 76 chr5 145031352 145031431 -7505828 + B4A SINE B4 71 144 -148 8 1691 387 283 0 10 chr5 145031378 145031493 -7505766 + B1F2 SINE Alu 7 116 -1 8 1691 293 257 13 13 chr5 145031504 145031579 -7505680 + PB1D10 SINE Alu 3 77 -40 8 1691 493 222 28 9 chr5 145031586 145031695 -7505564 + B3A SINE B2 3 113 -85 8 1691 396 0 0 0 chr5 145031734 145031778 -7505481 + (CA)n Simple_repeat Simple_repeat 1 44 0 8 1691 314 349 0 44 chr5 145031797 145031809 -7505450 + L1MEg LINE L1 1877 1888 -4196 9 1691 1180 61 0 0 chr5 145031809 145031956 -7505303 + B1_Mus2 SINE Alu 1 147 0 9 1691 314 349 0 44 chr5 145031956 145032078 -7505181 + L1MEg LINE L1 1889 2005 -4079 9 1691 762 240 130 0 chr5 145032484 145032676 -7504583 - ID_B1 SINE B4 -2 222 6 9 1691 314 301 0 0 chr5 145033244 145033327 -7503932 - ID4 SINE ID 0 83 1 9 1691 27 29 0 0 chr5 145033339 145033373 -7503886 + AT_rich Low_complexity Low_complexity 1 34 0 9 1691 259 252 54 35 chr5 145033581 145033710 -7503549 - ID4_ SINE ID -24 128 1 9 1691 537 231 19 0 chr5 145033932 145034040 -7503219 - PB1D10 SINE Alu -1 116 7 9 1691 757 156 44 0 chr5 145034204 145034339 -7502920 - B1_Mur3 SINE Alu -7 142 2 9 1691 752 200 103 21 chr5 145034502 145034696 -7502563 + B3 SINE B2 1 210 -6 9 1691 321 246 16 0 chr5 145034710 145034801 -7502458 + ID2 SINE ID 8 103 -49 9 1691 351 252 51 51 chr5 145034912 145035029 -7502230 - PB1D10 SINE Alu 0 117 1 1 1691 343 342 32 26 chr5 145035144 145035333 -7501926 + L1MC5 LINE L1 7352 7541 -420 1 1691 522 0 0 0 chr5 145035340 145035398 -7501861 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1691 342 45 0 0 chr5 145035400 145035444 -7501815 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1691 401 281 39 62 chr5 145035447 145035576 -7501683 - ID_B1 SINE B4 -21 203 78 1 1691 535 242 23 15 chr5 145036932 145037062 -7500197 + B3 SINE B2 59 189 -27 1 1691 183 245 41 0 chr5 145037478 145037527 -7499732 + MIRc SINE MIR 52 102 -166 1 1691 1089 83 7 0 chr5 145037547 145037692 -7499567 - B1_Mus2 SINE Alu -1 146 1 1 1691 321 256 103 0 chr5 145037712 145037790 -7499469 - B3A SINE B2 -109 89 4 1 1691 477 212 0 0 chr5 145037930 145038010 -7499249 + RSINE1 SINE B4 69 148 -17 1 1691 933 129 0 0 chr5 145038694 145039029 -7498230 + (CA)n Simple_repeat Simple_repeat 1 335 0 1 1691 316 302 41 10 chr5 145039044 145039141 -7498118 + RSINE1 SINE B4 64 163 -2 1 1691 180 0 0 0 chr5 145039729 145039749 -7497510 + (T)n Simple_repeat Simple_repeat 1 20 0 1 1691 1163 48 0 0 chr5 145039749 145039895 -7497364 - B1_Mus2 SINE Alu 0 147 2 1 1691 561 296 11 6 chr5 145040923 145041100 -7496159 + B3A SINE B2 3 180 -18 1 1691 274 294 29 0 chr5 145041185 145041253 -7496006 - ID4 SINE ID -13 70 1 1 1691 25 31 0 0 chr5 145041348 145041380 -7495879 + AT_rich Low_complexity Low_complexity 1 32 0 1 1691 1202 108 11 16 chr5 145041380 145041569 -7495690 - B2_Mm2 SINE B2 -5 190 3 1 1691 666 211 45 0 chr5 145041968 145042101 -7495158 - B1_Mur1 SINE Alu -8 141 3 1 1691 1015 56 35 21 chr5 145042112 145042257 -7495002 - B1_Mus2 SINE Alu 0 147 1 1 1691 308 337 12 0 chr5 145042463 145042549 -7494710 - PB1D10 SINE Alu 0 117 31 1 1691 324 70 0 0 chr5 145043297 145043340 -7493919 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1691 182 345 12 12 chr5 145044007 145044092 -7493167 + L3 LINE CR1 4156 4240 -249 1 1691 309 292 175 31 chr5 145044485 145044679 -7492580 + Kanga2_a DNA Tc2 59 280 -608 1 1691 658 218 184 11 chr5 145044948 145045138 -7492121 - ID_B1 SINE B4 -1 223 1 1 1691 455 282 18 0 chr5 145045817 145045927 -7491332 + PB1D9 SINE Alu 7 118 -2 1 1691 492 241 0 8 chr5 145046085 145046202 -7491057 - PB1D10 SINE Alu 0 117 2 1 1691 387 171 14 0 chr5 145046703 145046773 -7490486 + ID4_ SINE ID 2 72 -11 1 1691 966 87 0 0 chr5 145046773 145046911 -7490348 + (CA)n Simple_repeat Simple_repeat 2 139 0 1 1691 25 31 0 0 chr5 145047071 145047103 -7490156 + AT_rich Low_complexity Low_complexity 1 32 0 1 1691 457 242 145 64 chr5 145047468 145047640 -7489619 - B3A SINE B2 -10 188 3 1 1691 1385 40 11 0 chr5 145050453 145050628 -7486631 + B2_Mm1t SINE B2 3 179 -14 1 1691 213 200 25 0 chr5 145050643 145050683 -7486576 - ID SINE ID -182 42 2 1 1691 435 248 48 0 chr5 145050705 145050810 -7486449 - PB1D10 SINE Alu -7 110 1 1 1691 489 34 0 0 chr5 145050938 145050997 -7486262 + (GA)n Simple_repeat Simple_repeat 2 60 0 1 1691 200 132 26 0 chr5 145051242 145051280 -7485979 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 1 1691 735 173 8 3 chr5 145051281 145051429 -7485830 - B1_Mus2 SINE Alu -2 146 2 1 1691 430 236 45 0 chr5 145051486 145051596 -7485663 + RSINE1 SINE B4 18 132 -33 1 1691 816 117 23 0 chr5 145051802 145051930 -7485329 + B1_Mus1 SINE Alu 18 148 0 1 1691 240 246 29 0 chr5 145052278 145052347 -7484912 + L1MC4 LINE L1 7163 7233 -809 1 1691 234 0 0 0 chr5 145052646 145052672 -7484587 + (TG)n Simple_repeat Simple_repeat 2 27 0 1 1691 264 167 0 0 chr5 145052933 145052981 -7484278 + GA-rich Low_complexity Low_complexity 1 48 0 1 1691 571 196 184 30 chr5 145053185 145053353 -7483906 + B3A SINE B2 3 196 -2 1 1691 3207 24 0 0 chr5 145053374 145053756 -7483503 + L1Md_A LINE L1 6201 6582 0 1 1691 332 292 9 9 chr5 145053794 145053901 -7483358 + PB1D10 SINE Alu 5 111 -6 1 1691 858 167 0 7 chr5 145053998 145054143 -7483116 + B1_Mur4 SINE Alu 1 144 -6 1 1691 207 0 0 0 chr5 145054155 145054178 -7483081 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 1 1691 277 310 109 65 chr5 145054466 145054742 -7482517 + L1MCa LINE L1 302 589 -5456 1 1691 406 279 110 0 chr5 145054929 145055083 -7482176 + L1MCa LINE L1 979 1149 -5602 1 1691 395 317 49 14 chr5 145055083 145055227 -7482032 + B1F SINE Alu 1 149 0 1 1691 674 116 131 8 chr5 145055250 145055372 -7481887 + B1_Mus1 SINE Alu 12 148 0 1 1691 912 243 224 23 chr5 145055419 145055946 -7481313 + L1MCa LINE L1 1154 1786 -4965 1 1691 232 271 71 0 chr5 145055949 145056019 -7481240 + ID_B1 SINE B4 76 150 -74 1 1691 318 26 0 0 chr5 145056305 145056344 -7480915 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1691 569 195 7 86 chr5 145057050 145057190 -7480069 - B1_Mur3 SINE Alu -20 129 1 1 1691 515 310 12 42 chr5 145057210 145057375 -7479884 + Tigger5 DNA MER2_type 56 215 -2191 1 1691 378 254 54 12 chr5 145057376 145057523 -7479736 + L1MC1 LINE L1 5844 5996 -1789 1 1691 1198 70 0 50 chr5 145058063 145058085 -7479174 - B2_Mm2 SINE B2 -22 173 160 1 1691 180 0 0 0 chr5 145058085 145058105 -7479154 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1 1691 1198 70 0 50 chr5 145058105 145058263 -7478996 - B2_Mm2 SINE B2 -36 159 2 1 1691 560 209 47 61 chr5 145058627 145058775 -7478484 - RSINE1 SINE B4 -17 148 3 1 1691 482 284 172 0 chr5 145059146 145059164 -7478095 - B3A SINE B2 0 198 180 1 1691 183 42 0 0 chr5 145059164 145059188 -7478071 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1691 482 284 172 0 chr5 145059188 145059338 -7477921 - B3A SINE B2 -19 179 2 1 1691 264 296 174 0 chr5 145059520 145059618 -7477641 + MTEa LTR MaLR 2 116 -263 1 1691 309 258 157 0 chr5 145060023 145060112 -7477147 + RSINE1 SINE B4 9 111 -54 1 1691 25 31 0 0 chr5 145060154 145060186 -7477073 + AT_rich Low_complexity Low_complexity 1 32 0 1 1691 182 284 146 10 chr5 145061293 145061389 -7475870 + L2a LINE L2 3300 3408 -18 1 1691 504 214 255 12 chr5 145061397 145061558 -7475701 + B3 SINE B2 1 200 -16 1 1691 258 214 143 0 chr5 145062476 145062532 -7474727 + ID4_ SINE ID 7 70 -13 1 1691 700 230 6 27 chr5 145062708 145062891 -7474368 + ID_B1 SINE B4 5 183 -41 1 1691 386 248 0 71 chr5 145062792 145062905 -7474354 + PB1D10 SINE Alu 5 109 -8 1 1691 28 0 0 0 chr5 145063170 145063198 -7474061 + AT_rich Low_complexity Low_complexity 1 28 0 1 1691 320 228 0 71 chr5 145063237 145063322 -7473937 + PB1D10 SINE Alu 32 110 -7 1 1691 334 262 365 20 chr5 145063333 145063484 -7473775 + ID_B1 SINE B4 4 206 -18 1 1691 929 265 5 5 chr5 145063489 145063694 -7473565 + ID_B1 SINE B4 1 205 -19 1 1691 201 74 0 0 chr5 145063694 145063721 -7473538 + (TCCA)n Simple_repeat Simple_repeat 1 27 0 1 1691 736 197 0 60 chr5 145063748 145063899 -7473360 - B1_Mus1 SINE Alu 0 148 7 1 1691 505 227 0 105 chr5 145063899 145063920 -7473339 - ID_B1 SINE B4 0 224 71 1 1691 300 27 0 0 chr5 145064002 145064039 -7473220 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 1 1691 489 224 135 58 chr5 145064916 145064929 -7472330 - B3A SINE B2 -3 195 182 1 1691 351 0 0 0 chr5 145064929 145064968 -7472291 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1691 489 224 135 58 chr5 145064968 145065110 -7472149 - B3A SINE B2 -17 181 28 1 1691 667 263 191 81 chr5 145065150 145065701 -7471558 - L1MB7 LINE L1 -51 6133 5514 1 1691 716 187 97 0 chr5 145065701 145065835 -7471424 - B1_Mur1 SINE Alu 0 149 3 1 1691 667 263 191 81 chr5 145065835 145065874 -7471385 - L1MB7 LINE L1 -671 5513 5478 1 1691 474 121 23 35 chr5 145065887 145065973 -7471286 + B2_Mm2 SINE B2 1 85 -110 1 1691 748 236 19 6 chr5 145066047 145066205 -7471054 - RSINE1 SINE B4 0 165 6 1 1691 516 250 180 6 chr5 145066754 145066915 -7470344 - B3A SINE B2 -8 190 2 1 1691 1379 68 23 0 chr5 145066972 145067148 -7470111 + B2_Mm2 SINE B2 2 181 -14 1 1691 343 248 120 0 chr5 145067180 145067313 -7469946 + B2_Mm2 SINE B2 47 195 0 1 1691 432 331 31 21 chr5 145067522 145067713 -7469546 + ORR1E LTR MaLR 1 193 -166 1 1691 331 240 205 16 chr5 145067810 145067937 -7469322 + RSINE1 SINE B4 15 165 0 1 1691 285 197 129 4 chr5 145068010 145068124 -7469135 + MIRc SINE MIR 50 168 -94 1 1691 291 276 195 0 chr5 145068509 145068632 -7468627 + RSINE1 SINE B4 3 149 -16 1 1691 453 284 83 100 chr5 145068698 145068878 -7468381 + B4 SINE B4 1 177 -115 1 1691 1075 63 165 0 chr5 145069208 145069366 -7467893 + B2_Mm2 SINE B2 3 186 -9 1 1691 267 274 110 11 chr5 145069411 145069550 -7467709 + MIRc SINE MIR 82 237 -31 1 1691 782 85 0 58 chr5 145069562 145069736 -7467523 + (TCTCC)n Simple_repeat Simple_repeat 2 165 0 1 1691 747 48 0 37 chr5 145069754 145069863 -7467396 - B1_Mm SINE Alu 0 147 43 1 1691 406 265 75 89 chr5 145070062 145070344 -7466915 - B4A SINE B4 -4 288 11 1 1691 618 281 20 0 chr5 145070636 145070789 -7466470 + RSINE1 SINE B4 2 157 -8 1 1691 294 29 0 0 chr5 145070789 145070824 -7466435 + (CA)n Simple_repeat Simple_repeat 2 36 0 1 1691 37 0 0 0 chr5 145070824 145070861 -7466398 + AT_rich Low_complexity Low_complexity 1 37 0 1 1691 805 38 4 0 chr5 145071098 145071214 -7466045 - B1_Mm SINE Alu 0 120 1 1 1691 458 264 0 81 chr5 145071702 145071838 -7465421 - ID_B1 SINE B4 -5 219 95 1 1691 303 202 101 0 chr5 145071831 145071910 -7465349 - B1F1 SINE Alu -57 92 6 2 1691 238 163 0 45 chr5 145071927 145072006 -7465253 + B1F SINE Alu 56 149 0 2 1691 238 217 68 189 chr5 145072005 145072070 -7465189 - Tigger6a DNA MER2_type -266 817 747 2 1691 1091 57 57 0 chr5 145072070 145072210 -7465049 + B1_Mus1 SINE Alu 1 148 0 2 1691 238 217 68 189 chr5 145072210 145072292 -7464967 - Tigger6a DNA MER2_type -337 746 688 2 1691 289 259 0 0 chr5 145072307 145072365 -7464894 + ID4 SINE ID 3 60 -23 2 1691 412 338 94 61 chr5 145072471 145072730 -7464529 - MER21B LTR ERV1 -108 755 496 2 1691 704 190 28 14 chr5 145072730 145072874 -7464385 + B1_Mus1 SINE Alu 3 148 0 2 1691 412 316 93 52 chr5 145072874 145073229 -7464030 - MER21B LTR ERV1 -368 495 23 2 1691 618 305 91 13 chr5 145073231 145073540 -7463719 - Tigger6a DNA MER2_type -390 693 361 2 1691 356 247 0 0 chr5 145073671 145073748 -7463511 - ID4 SINE ID -5 78 2 2 1691 961 153 0 26 chr5 145073757 145073911 -7463348 - B1_Mur4 SINE Alu 0 150 1 2 1691 258 300 60 0 chr5 145073929 145074029 -7463230 + Tigger6b DNA MER2_type 1480 1585 -12 2 1691 421 249 19 37 chr5 145075073 145075212 -7462047 - RSINE1 SINE B4 -10 155 21 2 1691 221 227 227 0 chr5 145075224 145075299 -7461960 - PB1D10 SINE Alu -8 109 18 2 1691 180 338 95 0 chr5 145075352 145075426 -7461833 + MIR SINE MIR 41 121 -87 2 1691 210 37 0 0 chr5 145075733 145075760 -7461499 + (CAGAG)n Simple_repeat Simple_repeat 3 29 0 2 1691 1303 81 12 0 chr5 145076776 145076949 -7460310 - B2_Mm1a SINE B2 -18 175 1 2 1691 555 295 20 7 chr5 145076990 145077140 -7460119 - RSINE1 SINE B4 -12 153 2 2 1691 371 286 61 0 chr5 145077150 145077248 -7460011 - PB1D10 SINE Alu -3 114 11 2 1691 1765 192 73 42 chr5 145077272 145077680 -7459579 + MTC LTR MaLR 1 421 0 2 1691 216 167 0 0 chr5 145077746 145077794 -7459465 + T-rich Low_complexity Low_complexity 1 48 0 2 1691 764 250 109 34 chr5 145077822 145078087 -7459172 - B4A SINE B4 -6 286 2 2 1691 213 39 0 0 chr5 145078093 145078119 -7459140 + (TCC)n Simple_repeat Simple_repeat 3 28 0 2 1691 786 129 13 67 chr5 145080175 145080324 -7456935 + B1_Mur4 SINE Alu 1 141 -9 2 1691 249 33 0 0 chr5 145080324 145080354 -7456905 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 2 1691 376 228 136 16 chr5 145080380 145080505 -7456754 + B1F1 SINE Alu 1 140 -9 2 1691 531 45 0 0 chr5 145080680 145080746 -7456513 + (CA)n Simple_repeat Simple_repeat 2 67 0 2 1691 223 58 0 103 chr5 145080790 145080809 -7456450 + A-rich Low_complexity Low_complexity 1 16 0 2 1691 1267 20 0 0 chr5 145080809 145080956 -7456303 + B1_Mus2 SINE Alu 1 147 0 2 1691 223 58 0 103 chr5 145080956 145080994 -7456265 + A-rich Low_complexity Low_complexity 17 51 0 2 1691 799 206 33 22 chr5 145081117 145081301 -7455958 + B3A SINE B2 6 191 -7 2 1691 375 270 16 50 chr5 145081628 145081749 -7455510 - PB1D10 SINE Alu 0 117 1 2 1691 892 236 83 26 chr5 145081801 145082066 -7455193 - B4 SINE B4 -12 280 1 2 1691 668 228 56 50 chr5 145082103 145082283 -7454976 - B3A SINE B2 -17 181 1 2 1691 231 146 0 0 chr5 145082298 145082339 -7454920 - ID4_ SINE ID -37 46 6 2 1691 673 181 34 14 chr5 145083258 145083404 -7453855 - B1_Mur2 SINE Alu 0 149 1 2 1691 1181 55 14 0 chr5 145084097 145084242 -7453017 - B1_Mus1 SINE Alu 0 148 2 2 1691 281 267 165 11 chr5 145084518 145084609 -7452650 - PB1D10 SINE Alu -12 105 1 2 1691 406 228 73 21 chr5 145084732 145084849 -7452410 + PB1D7 SINE Alu 1 120 0 2 1691 800 159 0 0 chr5 145084946 145085072 -7452187 - B1_Mur1 SINE Alu -21 128 3 2 1691 21 71 0 0 chr5 145085292 145085334 -7451925 + AT_rich Low_complexity Low_complexity 1 42 0 2 1691 348 24 0 0 chr5 145085631 145085672 -7451587 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 1691 387 0 0 0 chr5 145085672 145085714 -7451545 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1691 781 295 5 5 chr5 145085716 145085900 -7451359 - ID_B1 SINE B4 -13 211 28 2 1691 296 203 0 28 chr5 145086856 145086927 -7450332 - HAL1 LINE L1 -409 2098 2030 2 1691 244 250 13 53 chr5 145087296 145087372 -7449887 - RSINE1 SINE B4 -45 120 48 2 1691 385 295 141 80 chr5 145087399 145087568 -7449691 - HAL1 LINE L1 -879 1628 1469 2 1691 988 234 119 0 chr5 145087568 145087812 -7449447 - B4A SINE B4 -16 276 4 2 1691 385 295 141 80 chr5 145087812 145088103 -7449156 - HAL1 LINE L1 -1039 1468 1140 2 1691 1146 58 0 0 chr5 145088130 145088267 -7448992 - B1_Mus2 SINE Alu -9 138 2 2 1691 366 200 126 23 chr5 145088291 145088378 -7448881 - PB1D10 SINE Alu 0 117 22 2 1691 1132 214 15 0 chr5 145088604 145088810 -7448449 - B3 SINE B2 -7 209 1 2 1691 459 274 26 0 chr5 145088816 145088929 -7448330 - PB1D10 SINE Alu -1 116 1 2 1691 207 0 0 0 chr5 145088937 145088960 -7448299 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2 1691 410 206 90 30 chr5 145088962 145089062 -7448197 - PB1D9 SINE Alu -13 107 2 2 1691 658 285 60 0 chr5 145089093 145089244 -7448015 + B3A SINE B2 1 160 -38 2 1691 243 0 0 0 chr5 145089251 145089278 -7447981 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 1691 976 215 5 16 chr5 145089561 145089755 -7447504 - ID_B1 SINE B4 -30 194 3 2 1691 486 296 32 19 chr5 145089806 145089961 -7447298 - RSINE1 SINE B4 -4 161 5 2 1691 210 37 0 0 chr5 145090251 145090278 -7446981 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 1691 1807 161 74 83 chr5 145090489 145090599 -7446660 + MTC LTR MaLR 1 111 -310 2 1691 1057 139 209 0 chr5 145090599 145090786 -7446473 - URR1A DNA MER1_type 0 226 1 2 1691 1807 161 74 83 chr5 145090786 145090880 -7446379 + MTC LTR MaLR 112 197 -224 2 1691 1186 47 152 12 chr5 145090880 145091051 -7446208 + B2_Mm2 SINE B2 1 195 0 2 1691 1807 161 74 83 chr5 145091051 145091265 -7445994 + MTC LTR MaLR 198 416 -5 2 1691 474 318 69 29 chr5 145091283 145091458 -7445801 - B3A SINE B2 -16 182 1 2 1691 1171 273 101 19 chr5 145091588 145092055 -7445204 - L1MD2 LINE L1 -144 6035 5531 2 1691 838 281 33 0 chr5 145092089 145092299 -7444960 + ID_B1 SINE B4 6 222 -2 2 1691 196 87 21 21 chr5 145092465 145092476 -7444783 + (CAAAA)n Simple_repeat Simple_repeat 2 12 0 2 1691 1065 101 0 20 chr5 145092476 145092627 -7444632 + B1_Mus1 SINE Alu 1 148 0 2 1691 196 87 21 21 chr5 145092627 145092662 -7444597 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 2 1691 911 284 17 31 chr5 145092771 145093065 -7444194 - B4 SINE B4 -2 290 1 2 1691 728 203 14 21 chr5 145093069 145093210 -7444049 - B1_Mur1 SINE Alu -1 148 9 2 1691 713 113 228 28 chr5 145093210 145093225 -7444034 - B2_Mm2 SINE B2 -18 177 162 2 1691 270 0 0 0 chr5 145093225 145093255 -7444004 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 2 1691 713 113 228 28 chr5 145093255 145093384 -7443875 - B2_Mm2 SINE B2 -34 161 4 2 1691 209 109 21 42 chr5 145094252 145094300 -7442959 + A-rich Low_complexity Low_complexity 2 48 0 2 1691 417 264 27 60 chr5 145094349 145094498 -7442761 + B1F1 SINE Alu 6 149 0 2 1691 666 195 62 0 chr5 145094501 145094629 -7442630 + B1_Mur4 SINE Alu 2 137 -13 2 1691 227 299 104 0 chr5 145095233 145095310 -7441949 + FLAM_A SINE Alu 1 62 -233 2 1691 1254 47 0 0 chr5 145095336 145095484 -7441775 + B1_Mus1 SINE Alu 1 148 0 2 1691 878 119 20 34 chr5 145095550 145095698 -7441561 + B1_Mur3 SINE Alu 2 147 -2 2 1692 181 95 169 113 chr5 145096831 145096902 -7440357 - MIRb SINE MIR -70 198 124 2 1692 608 299 32 0 chr5 145097232 145097389 -7439870 + RSINE1 SINE B4 2 163 -2 2 1692 270 253 187 29 chr5 145097817 145097988 -7439271 + MLT2C1 LTR ERVL 15 212 -185 2 1692 535 151 25 9 chr5 145098081 145098195 -7439064 - B1_Mus1 SINE Alu -7 113 1 2 1692 327 247 52 0 chr5 145098591 145098668 -7438591 + ID4_ SINE ID 3 83 0 2 1692 527 220 51 45 chr5 145099670 145099846 -7437413 + L1MB7 LINE L1 5731 5907 -277 2 1692 289 218 63 13 chr5 145099846 145099925 -7437334 + ID4_ SINE ID 1 83 0 2 1692 536 234 41 34 chr5 145100021 145100167 -7437092 - B1F SINE Alu -1 148 2 2 1692 636 276 0 7 chr5 145100381 145100523 -7436736 + RSINE1 SINE B4 12 152 -13 2 1692 255 61 0 0 chr5 145100693 145100726 -7436533 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 1692 390 21 0 0 chr5 145100726 145100772 -7436487 + (GA)n Simple_repeat Simple_repeat 1 47 0 2 1692 197 83 28 0 chr5 145100780 145100816 -7436443 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 1692 246 172 0 29 chr5 145100849 145100951 -7436308 + GA-rich Low_complexity Low_complexity 1 99 0 2 1692 336 176 0 22 chr5 145101017 145101151 -7436108 + GA-rich Low_complexity Low_complexity 1 131 0 2 1692 261 176 0 27 chr5 145101217 145101328 -7435931 + GA-rich Low_complexity Low_complexity 1 108 0 2 1692 195 114 0 0 chr5 145101381 145101416 -7435843 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 1692 876 209 54 50 chr5 145101447 145101668 -7435591 - B4 SINE B4 -29 263 42 2 1692 419 235 312 0 chr5 145102408 145102578 -7434681 + ID_B1 SINE B4 1 223 -1 2 1692 356 309 28 41 chr5 145102818 145102963 -7434296 + B1F2 SINE Alu 6 148 -1 2 1692 293 253 67 0 chr5 145102969 145103044 -7434215 + RSINE1 SINE B4 4 83 -82 2 1692 429 109 0 0 chr5 145103044 145103108 -7434151 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 1692 368 243 52 35 chr5 145103187 145103302 -7433957 + PB1D10 SINE Alu 1 117 0 2 1692 571 283 6 56 chr5 145104064 145104225 -7433034 + RSINE1 SINE B4 2 154 -11 2 1692 233 241 112 67 chr5 145104416 145104431 -7432828 + B4A SINE B4 77 169 -123 2 1692 332 147 0 81 chr5 145104431 145104505 -7432754 + PB1D9 SINE Alu 17 84 -36 2 1692 749 246 29 0 chr5 145104895 145105070 -7432189 - B3A SINE B2 -18 180 1 3 1692 23 0 0 0 chr5 145105790 145105813 -7431446 + AT_rich Low_complexity Low_complexity 1 23 0 3 1692 405 77 14 0 chr5 145105826 145105891 -7431368 - B2_Mm2 SINE B2 -82 116 46 3 1692 1391 68 23 0 chr5 145105903 145106080 -7431179 - B2_Mm2 SINE B2 -14 181 1 3 1692 428 272 190 9 chr5 145106144 145106370 -7430889 - B4A SINE B4 -25 267 1 3 1692 278 192 39 0 chr5 145106385 145106437 -7430822 - ID SINE ID -166 58 5 3 1692 409 290 63 28 chr5 145107098 145107240 -7430019 + RSINE1 SINE B4 2 148 -17 3 1692 240 122 0 0 chr5 145107246 145107287 -7429972 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1692 336 264 61 92 chr5 145107312 145107340 -7429919 - B2_Mm2 SINE B2 -4 191 165 3 1692 324 0 0 0 chr5 145107340 145107376 -7429883 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1692 594 216 71 20 chr5 145107376 145107543 -7429716 - B3A SINE B2 -31 164 2 3 1692 21 0 0 0 chr5 145107995 145108016 -7429243 + AT_rich Low_complexity Low_complexity 1 21 0 3 1692 473 144 307 26 chr5 145108732 145108846 -7428413 + B1_Mur1 SINE Alu 2 147 -2 3 1692 758 292 86 11 chr5 145108881 145109148 -7428111 + B4A SINE B4 2 288 -4 3 1692 1158 91 35 70 chr5 145109366 145109567 -7427692 + B2_Mm2 SINE B2 1 194 -1 3 1692 238 350 42 0 chr5 145110036 145110156 -7427103 + L1ME3A LINE L1 5554 5678 -484 3 1692 307 312 92 0 chr5 145110341 145110482 -7426777 + L1ME3A LINE L1 5955 6108 -65 3 1692 207 0 0 0 chr5 145110537 145110560 -7426699 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 3 1692 1111 75 0 20 chr5 145110565 145110715 -7426544 - B1_Mus1 SINE Alu -1 147 1 3 1692 250 184 108 50 chr5 145110725 145110845 -7426414 - Lx5 LINE L1 0 7050 6924 3 1692 1463 58 37 11 chr5 145110908 145111098 -7426161 + B2_Mm2 SINE B2 1 195 0 3 1692 26 50 0 0 chr5 145111770 145111810 -7425449 + AT_rich Low_complexity Low_complexity 1 40 0 3 1692 632 250 32 60 chr5 145111814 145111878 -7425381 - B3 SINE B2 -2 214 153 3 1692 198 0 0 0 chr5 145111878 145111900 -7425359 + (GA)n Simple_repeat Simple_repeat 1 22 0 3 1692 632 250 32 60 chr5 145111900 145112052 -7425207 - B3 SINE B2 -64 152 4 3 1692 512 252 8 0 chr5 145112057 145112176 -7425083 - PB1D7 SINE Alu 0 120 1 3 1692 242 224 20 0 chr5 145112593 145112642 -7424617 + B3 SINE B2 58 107 -109 3 1692 873 245 24 5 chr5 145112702 145112911 -7424348 + B3 SINE B2 1 213 -3 3 1692 905 89 0 127 chr5 145112947 145113128 -7424131 + L1_Mus1 LINE L1 6410 6567 0 3 1692 391 299 126 46 chr5 145113237 145113500 -7423759 - L2a LINE L2 -10 3416 3133 3 1692 572 198 9 43 chr5 145113526 145113642 -7423617 - B1_Mur4 SINE Alu -2 148 37 3 1692 909 254 70 49 chr5 145113646 145113932 -7423327 + B4A SINE B4 1 292 0 3 1692 800 199 69 74 chr5 145113952 145114005 -7423254 - B3 SINE B2 0 216 173 3 1692 351 0 0 0 chr5 145114005 145114044 -7423215 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 3 1692 1280 69 0 1 chr5 145114044 145114207 -7423052 - B2_Mm2 SINE B2 -44 172 1 3 1692 616 211 177 51 chr5 145114374 145114549 -7422710 - B3A SINE B2 0 198 2 3 1692 1377 86 11 0 chr5 145114695 145114881 -7422378 - B2_Mm1t SINE B2 -4 189 2 3 1692 207 0 0 0 chr5 145115003 145115026 -7422233 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 1692 1315 20 0 0 chr5 145115042 145115189 -7422070 - B1_Mus1 SINE Alu -1 147 1 3 1692 279 0 0 0 chr5 145115623 145115654 -7421605 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1692 1153 88 0 26 chr5 145115777 145115929 -7421330 + B1_Mus1 SINE Alu 1 148 0 3 1692 231 65 21 42 chr5 145115931 145115979 -7421280 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 3 1692 207 0 0 0 chr5 145116227 145116250 -7421009 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3 1692 347 229 25 107 chr5 145116399 145116521 -7420738 + PB1D10 SINE Alu 1 112 -5 3 1692 180 77 0 0 chr5 145116530 145116556 -7420703 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3 1692 696 194 70 21 chr5 145116574 145116716 -7420543 + B1_Mur1 SINE Alu 1 149 0 3 1692 243 0 0 0 chr5 145120040 145120067 -7417192 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 1692 938 268 37 63 chr5 145120071 145120342 -7416917 - B4 SINE B4 -28 264 1 3 1692 1055 187 13 75 chr5 145120430 145120656 -7416603 - B3 SINE B2 -3 213 2 3 1692 315 270 0 0 chr5 145121697 145121760 -7415499 - ID4 SINE ID -19 64 2 3 1692 326 304 10 42 chr5 145121718 145121814 -7415445 - ZP3AR Satellite Satellite -74 138 46 3 1692 217 286 16 16 chr5 145121860 145121924 -7415335 + L2b LINE L2 3311 3374 -1 3 1692 1037 263 10 76 chr5 145122490 145122566 -7414693 + B4A SINE B4 2 77 -215 3 1692 279 0 0 0 chr5 145122566 145122597 -7414662 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1692 1037 263 10 76 chr5 145122597 145122824 -7414435 + B4A SINE B4 78 285 -7 3 1692 1070 175 49 5 chr5 145122936 145123120 -7414139 - B3A SINE B2 -6 192 1 3 1692 231 345 113 33 chr5 145123371 145123521 -7413738 + L2a LINE L2 3002 3166 -260 3 1692 1958 163 14 9 chr5 145123622 145123969 -7413290 + Lx LINE L1 6305 6653 -1 3 1692 878 275 28 36 chr5 145124172 145124249 -7413010 - B4A SINE B4 -4 288 213 3 1692 231 36 0 0 chr5 145124249 145124277 -7412982 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3 1692 878 275 28 36 chr5 145124277 145124452 -7412807 - B4A SINE B4 -80 212 38 3 1692 898 261 53 46 chr5 145124464 145124749 -7412510 - B4A SINE B4 -2 290 4 3 1692 225 94 0 0 chr5 145124749 145124781 -7412478 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 3 1692 273 314 14 0 chr5 145125555 145125625 -7411634 - PB1D10 SINE Alu -39 78 8 3 1692 741 256 86 45 chr5 145125752 145125973 -7411286 - B4A SINE B4 -62 230 1 3 1692 398 292 31 0 chr5 145126074 145126170 -7411089 + PB1D10 SINE Alu 9 107 -10 3 1692 331 100 29 0 chr5 145126196 145126266 -7410993 + (CAAAAA)n Simple_repeat Simple_repeat 2 73 0 3 1692 1386 56 73 0 chr5 145126274 145126452 -7410807 + B2_Mm2 SINE B2 3 193 -2 3 1692 225 0 0 0 chr5 145126454 145126479 -7410780 + (CATAA)n Simple_repeat Simple_repeat 1 25 0 3 1692 1503 76 29 6 chr5 145127352 145127708 -7409551 + ZP3AR Satellite Satellite 1 364 0 3 1692 334 271 31 20 chr5 145127660 145127758 -7409501 + BC1_Mm scRNA scRNA 1 99 -53 3 1692 751 150 12 150 chr5 145127981 145128154 -7409105 - B1_Mur4 SINE Alu 0 150 2 3 1692 1118 117 66 11 chr5 145128187 145128369 -7408890 + B2_Mm2 SINE B2 1 192 -3 3 1692 402 363 8 24 chr5 145128373 145128500 -7408759 + RSINE1 SINE B4 41 165 0 3 1692 21 57 0 0 chr5 145128500 145128535 -7408724 + AT_rich Low_complexity Low_complexity 1 35 0 3 1692 644 77 25 8 chr5 145128558 145128676 -7408583 + (TG)n Simple_repeat Simple_repeat 2 121 0 3 1692 398 219 130 73 chr5 145128696 145128819 -7408440 - RSINE1 SINE B4 -32 133 4 3 1692 340 286 48 0 chr5 145128892 145128976 -7408283 - PB1D10 SINE Alu -23 94 7 3 1692 726 254 153 0 chr5 145128989 145129178 -7408081 - ID_B1 SINE B4 0 224 7 3 1692 1491 42 0 50 chr5 145129200 145129399 -7407860 - B2_Mm1a SINE B2 -4 189 1 3 1692 242 250 11 56 chr5 145129406 145129495 -7407764 - MER2 DNA MER2_type -127 218 134 3 1692 1472 217 69 13 chr5 145129504 145129821 -7407438 + MTE2b LTR MaLR 42 376 -3 3 1692 272 267 165 37 chr5 145129821 145129924 -7407335 - MER2 DNA MER2_type -204 141 25 3 1692 240 158 128 116 chr5 145130027 145130113 -7407146 - MTE2b LTR MaLR 0 379 293 3 1692 1518 234 86 8 chr5 145130115 145130486 -7406773 - MTD LTR MaLR -14 405 6 3 1692 381 296 0 0 chr5 145130504 145130592 -7406667 - MTE2b LTR MaLR -90 289 202 3 1692 277 301 191 12 chr5 145130634 145130802 -7406457 - B4A SINE B4 -2 290 93 3 1692 1164 207 0 0 chr5 145130824 145131022 -7406237 - B3 SINE B2 -7 209 12 3 1692 361 240 41 20 chr5 145131024 145131044 -7406215 - B4A SINE B4 -191 101 2 3 1692 432 182 13 13 chr5 145131044 145131122 -7406137 - B3 SINE B2 -137 79 2 3 1692 618 298 119 25 chr5 145131122 145131518 -7405741 + Lx8 LINE L1 7039 7471 -2 3 1692 248 182 0 154 chr5 145131619 145131655 -7405604 + RSINE1 SINE B4 111 140 -25 3 1692 750 93 0 0 chr5 145131655 145131763 -7405496 + (TC)n Simple_repeat Simple_repeat 2 109 0 3 1692 248 182 0 154 chr5 145131763 145131791 -7405468 + RSINE1 SINE B4 141 165 0 3 1692 645 105 0 0 chr5 145132442 145132537 -7404722 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 3 1692 873 0 0 0 chr5 145132540 145132637 -7404622 + (TTC)n Simple_repeat Simple_repeat 3 99 0 3 1692 251 250 0 0 chr5 145132748 145132812 -7404447 - ID4_ SINE ID -19 64 1 3 1692 398 275 68 61 chr5 145132817 145132964 -7404295 - B1F SINE Alu 0 149 2 3 1692 234 0 0 0 chr5 145133581 145133607 -7403652 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 1692 24 53 0 0 chr5 145133646 145133684 -7403575 + AT_rich Low_complexity Low_complexity 1 38 0 3 1692 975 201 81 0 chr5 145133694 145133868 -7403391 - B3 SINE B2 -28 188 1 3 1692 424 269 149 31 chr5 145134191 145134352 -7402907 - B3A SINE B2 -18 180 1 3 1692 429 139 198 0 chr5 145134359 145134445 -7402814 - ID_B1 SINE B4 -5 219 117 3 1692 233 255 146 10 chr5 145134445 145134462 -7402797 - B1_Mur1 SINE Alu -5 144 28 3 1692 386 243 93 44 chr5 145134780 145134900 -7402359 - ID_B1 SINE B4 -162 130 3 3 1692 344 220 160 57 chr5 145134905 145135011 -7402248 - PB1D10 SINE Alu 0 117 1 3 1692 357 198 10 19 chr5 145135024 145135127 -7402132 + CT-rich Low_complexity Low_complexity 1 102 0 3 1692 492 235 16 7 chr5 145135128 145135237 -7402022 - B1_Mur2 SINE Alu -1 148 7 3 1692 332 354 0 0 chr5 145135368 145135450 -7401809 + RSINE1 SINE B4 68 149 -16 3 1692 22 35 0 0 chr5 145135460 145135489 -7401770 + AT_rich Low_complexity Low_complexity 1 29 0 3 1692 289 109 36 0 chr5 145135920 145135975 -7401284 + (TCC)n Simple_repeat Simple_repeat 2 58 0 4 1692 637 168 88 0 chr5 145135975 145136088 -7401171 - B1_Mur2 SINE Alu 0 149 27 4 1692 891 290 76 8 chr5 145136106 145136356 -7400903 + B4 SINE B4 9 275 -17 4 1692 799 239 13 25 chr5 145136461 145136620 -7400639 - RSINE1 SINE B4 -6 159 3 4 1692 239 229 21 0 chr5 145136811 145136859 -7400400 - B1F SINE Alu -8 141 93 4 1692 333 0 0 0 chr5 145136871 145136908 -7400351 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 4 1692 1065 145 0 0 chr5 145136908 145137087 -7400172 + (TC)n Simple_repeat Simple_repeat 2 180 0 4 1692 627 63 0 0 chr5 145137089 145137168 -7400091 - B2_Mm2 SINE B2 -42 153 75 4 1692 1450 80 0 26 chr5 145137406 145137599 -7399660 + B2_Mm2 SINE B2 1 188 -7 4 1692 331 242 219 24 chr5 145137909 145138032 -7399227 - Lx8 LINE L1 -326 7147 7001 4 1692 522 159 0 0 chr5 145138037 145138105 -7399154 + ORR1A2 LTR MaLR 1 68 -261 4 1692 1910 123 22 15 chr5 145138105 145138479 -7398780 + ORR1A2 LTR MaLR 1 394 0 4 1692 1087 121 0 6 chr5 145138479 145138645 -7398614 + ORR1A2-int LTR MaLR 1 165 -1798 4 1692 1115 127 0 0 chr5 145138636 145138802 -7398457 - ORR1A4 LTR MaLR -163 166 1 4 1692 2324 223 132 12 chr5 145138813 145139457 -7397802 - Lx8 LINE L1 -480 6993 6273 4 1692 334 200 0 0 chr5 145139507 145139562 -7397697 + B1_Mus2 SINE Alu 1 55 -92 4 1692 556 204 0 0 chr5 145139632 145139735 -7397524 + B1_Mur4 SINE Alu 43 145 -5 4 1692 226 222 0 0 chr5 145139762 145139816 -7397443 + (ATGGTG)n Simple_repeat Simple_repeat 4 57 0 4 1692 686 255 0 12 chr5 145139817 145139980 -7397279 - HAL1-2a_MD LINE L1 -519 2505 2345 4 1692 576 243 28 35 chr5 145139994 145140139 -7397120 - RSINE1 SINE B4 -19 146 3 4 1692 254 196 0 67 chr5 145140139 145140194 -7397065 - Tigger5 DNA MER2_type -2331 75 24 4 1692 2168 113 81 79 chr5 145140196 145140589 -7396670 - ORR1B1 LTR MaLR 0 394 1 4 1692 472 252 0 9 chr5 145140600 145140712 -7396547 - PB1D7 SINE Alu -5 115 5 4 1692 701 240 147 35 chr5 145140860 145141119 -7396140 + B4A SINE B4 5 292 0 4 1692 312 193 53 0 chr5 145141143 145141257 -7396002 + (CA)n Simple_repeat Simple_repeat 1 120 0 4 1692 532 218 17 11 chr5 145141272 145141448 -7395811 + (CA)n Simple_repeat Simple_repeat 2 178 0 4 1692 227 287 194 65 chr5 145141641 145141857 -7395402 - L2 LINE L2 -357 3062 2819 4 1692 1682 85 2 0 chr5 145141916 145142222 -7395037 - ZP3AR Satellite Satellite -21 306 1 4 1692 501 317 118 62 chr5 145142230 145142694 -7394565 - L2 LINE L2 -622 2797 2308 4 1692 639 293 10 69 chr5 145142703 145142929 -7394330 + B3A SINE B2 1 212 -4 4 1692 1359 87 16 11 chr5 145142939 145143126 -7394133 + B2_Mm2 SINE B2 2 189 -6 4 1692 493 224 2 9 chr5 145143146 145143266 -7393993 + L1MA4 LINE L1 5656 5798 -502 4 1692 2126 153 135 7 chr5 145143271 145143351 -7393908 - Lx3C LINE L1 0 6976 6899 4 1692 333 0 0 0 chr5 145143351 145143388 -7393871 + (CACCC)n Simple_repeat Simple_repeat 3 39 0 4 1692 2126 153 135 7 chr5 145143388 145143728 -7393531 - Lx3C LINE L1 -78 6898 6503 4 1692 356 0 23 0 chr5 145143756 145143800 -7393459 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 4 1692 740 175 0 8 chr5 145143810 145143937 -7393322 - B1_Mus1 SINE Alu -22 126 1 4 1692 539 188 27 1 chr5 145143940 145144060 -7393199 + L1MA4 LINE L1 5759 5901 -399 4 1692 562 282 120 82 chr5 145144227 145144494 -7392765 + B4A SINE B4 11 287 -5 4 1692 723 253 34 0 chr5 145144647 145144793 -7392466 + RSINE1 SINE B4 13 163 -2 4 1692 730 216 74 7 chr5 145144978 145145127 -7392132 - B3 SINE B2 -56 160 2 4 1692 481 248 170 0 chr5 145145128 145145269 -7391990 + B4A SINE B4 10 174 -118 4 1692 267 100 10 72 chr5 145145292 145145389 -7391870 + (CCAA)n Simple_repeat Simple_repeat 1 91 0 4 1692 262 277 23 46 chr5 145145558 145145645 -7391614 + L4 LINE RTE 1687 1771 -258 4 1692 193 49 0 89 chr5 145145709 145145754 -7391505 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 4 1692 474 191 16 8 chr5 145145768 145145895 -7391364 + G-rich Low_complexity Low_complexity 6 133 0 4 1692 355 297 34 78 chr5 145145907 145146072 -7391187 + B3A SINE B2 6 161 -37 4 1692 2166 160 40 11 chr5 145146072 145146445 -7390814 - ORR1C2 LTR MaLR 0 384 1 4 1692 355 297 34 78 chr5 145146445 145146458 -7390801 + B3A SINE B2 162 175 -23 4 1692 685 208 66 76 chr5 145146520 145146718 -7390541 + B3A SINE B2 1 196 -2 4 1692 241 286 83 0 chr5 145146720 145146804 -7390455 + L4 LINE RTE 1770 1860 -169 4 1692 401 214 87 10 chr5 145146836 145146940 -7390319 - ID_B1 SINE B4 -3 221 110 4 1692 244 284 9 73 chr5 145146970 145147080 -7390179 + L4 LINE RTE 1927 2029 0 4 1692 666 252 33 7 chr5 145147467 145147619 -7389640 - RSINE1 SINE B4 -7 158 3 4 1692 283 282 96 46 chr5 145147688 145147907 -7389352 - MER113A DNA MER1_type -4 310 81 4 1692 203 245 0 0 chr5 145147908 145147961 -7389298 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1692 198 192 0 0 chr5 145147974 145148026 -7389233 + (TG)n Simple_repeat Simple_repeat 1 52 0 4 1692 345 311 0 0 chr5 145148046 145148149 -7389110 + (TG)n Simple_repeat Simple_repeat 2 104 0 4 1692 873 249 90 26 chr5 145148152 145148178 -7389081 - B4A SINE B4 0 292 270 4 1692 387 0 0 0 chr5 145148178 145148221 -7389038 + (CA)n Simple_repeat Simple_repeat 1 43 0 4 1692 873 249 90 26 chr5 145148221 145148462 -7388797 - B4A SINE B4 -23 269 9 4 1692 22 0 0 0 chr5 145148474 145148496 -7388763 + AT_rich Low_complexity Low_complexity 1 22 0 4 1692 200 59 29 0 chr5 145148510 145148544 -7388715 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4 1692 334 247 26 0 chr5 145148545 145148622 -7388637 - B4 SINE B4 -211 81 3 4 1692 485 317 28 14 chr5 145148638 145148779 -7388480 - ID_B1 SINE B4 0 224 82 4 1692 627 26 0 0 chr5 145148996 145149073 -7388186 + (TC)n Simple_repeat Simple_repeat 2 78 0 4 1692 883 231 30 3 chr5 145149427 145149638 -7387621 + B3A SINE B2 1 216 0 4 1692 933 217 77 5 chr5 145149653 145149861 -7387398 + ID_B1 SINE B4 2 224 0 4 1692 414 0 0 0 chr5 145150150 145150196 -7387063 + (CA)n Simple_repeat Simple_repeat 1 46 0 4 1692 320 243 0 13 chr5 145150223 145150298 -7386961 - B4A SINE B4 -87 205 132 4 1692 394 200 0 14 chr5 145150299 145150370 -7386889 + ID SINE ID 8 77 -147 4 1692 942 182 326 7 chr5 145150370 145150661 -7386598 - ORR1C2 LTR MaLR 0 384 1 4 1692 759 258 12 6 chr5 145150661 145150811 -7386448 + ID_B1 SINE B4 74 224 0 4 1692 1289 132 19 10 chr5 145151070 145151277 -7385982 - ORR1C2 LTR MaLR -2 382 174 4 1692 260 230 54 66 chr5 145151190 145151432 -7385827 - RMER17D2 LTR ERVK -263 546 308 4 1692 1628 27 11 0 chr5 145151464 145151652 -7385607 + B2_Mm1a SINE B2 3 192 -1 4 1692 490 140 34 34 chr5 145151669 145151846 -7385413 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 4 1692 251 266 26 0 chr5 145151846 145151959 -7385300 + (CAGA)n Simple_repeat Simple_repeat 3 118 0 4 1692 495 259 20 114 chr5 145151959 145151974 -7385285 - ORR1C2 LTR MaLR -174 185 172 4 1692 447 19 0 0 chr5 145151974 145152026 -7385233 + (GAA)n Simple_repeat Simple_repeat 3 54 0 4 1692 942 137 2 64 chr5 145152026 145152211 -7385048 - ORR1C2 LTR MaLR -188 171 1 4 1692 957 280 78 11 chr5 145152211 145152481 -7384778 - MTEa LTR MaLR -64 315 28 4 1692 334 218 103 0 chr5 145153207 145153285 -7383974 + PB1D10 SINE Alu 32 117 0 4 1692 611 323 41 5 chr5 145153372 145153568 -7383691 + B4A SINE B4 2 204 -88 4 1692 310 254 16 0 chr5 145153555 145153618 -7383641 + B4A SINE B4 141 204 -88 4 1692 342 206 16 0 chr5 145153605 145153668 -7383591 + B4A SINE B4 141 204 -88 4 1692 286 258 16 0 chr5 145153655 145153717 -7383542 + B4A SINE B4 141 203 -89 4 1692 351 194 24 14 chr5 145153685 145153768 -7383491 + B4A SINE B4 122 204 -88 4 1692 631 221 39 0 chr5 145153755 145153882 -7383377 + B4A SINE B4 141 272 -20 4 1692 425 242 19 48 chr5 145153880 145153984 -7383275 - MTE2a LTR MaLR -221 158 58 4 1692 281 375 0 20 chr5 145153985 145154083 -7383176 - MTE2a LTR MaLR -283 96 1 4 1692 201 121 0 0 chr5 145154281 145154314 -7382945 + (TG)n Simple_repeat Simple_repeat 1 33 0 4 1692 689 293 15 128 chr5 145154320 145154555 -7382704 - B4A SINE B4 0 292 85 4 1692 1017 106 0 0 chr5 145154555 145154735 -7382524 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1692 689 293 15 128 chr5 145154735 145154828 -7382431 - B4A SINE B4 -208 84 1 4 1692 283 181 0 27 chr5 145154893 145154967 -7382292 + CT-rich Low_complexity Low_complexity 2 73 0 4 1692 425 250 43 0 chr5 145154987 145155079 -7382180 - B1F1 SINE Alu -53 96 1 4 1692 422 189 0 21 chr5 145155449 145155546 -7381713 + CT-rich Low_complexity Low_complexity 1 95 0 4 1692 767 287 125 4 chr5 145155653 145155901 -7381358 - B4A SINE B4 -8 284 7 4 1692 210 222 0 0 chr5 145155914 145155968 -7381291 + CT-rich Low_complexity Low_complexity 3 56 0 4 1692 259 200 16 16 chr5 145155970 145156031 -7381228 + MLT1I LTR MaLR 351 411 0 4 1692 5054 133 88 34 chr5 145156266 145157122 -7380137 - RMER19B LTR ERVK 0 902 1 4 1692 466 283 17 26 chr5 145157351 145157467 -7379792 + PB1D10 SINE Alu 1 115 -2 4 1692 1140 84 18 0 chr5 145157465 145157648 -7379611 + ZP3AR Satellite Satellite 1 186 0 4 1692 21 36 0 0 chr5 145157875 145157903 -7379356 + AT_rich Low_complexity Low_complexity 1 28 0 4 1692 538 246 0 60 chr5 145157955 145158089 -7379170 - ZP3AR Satellite Satellite -64 148 23 4 1692 24 32 0 0 chr5 145158552 145158583 -7378676 + AT_rich Low_complexity Low_complexity 1 31 0 4 1692 204 135 0 0 chr5 145158696 145158733 -7378526 + (C)n Simple_repeat Simple_repeat 1 37 0 4 1692 330 287 96 40 chr5 145158848 145159071 -7378188 - HAL1-3A_ME LINE L1 -414 2444 2283 4 1692 229 341 159 0 chr5 145159098 145159186 -7378073 - PB1D10 SINE Alu -15 102 1 4 1692 550 118 12 5 chr5 145159274 145159371 -7377888 - B1_Mus2 SINE Alu 0 150 57 4 1692 992 49 8 0 chr5 145159445 145159567 -7377692 - B1_Mus1 SINE Alu -1 147 25 4 1692 409 168 37 112 chr5 145159478 145159585 -7377674 - MT2B LTR ERVL -337 264 166 4 1692 622 233 8 0 chr5 145159580 145159709 -7377550 + ID_B1 SINE B4 84 213 -11 4 1692 1156 65 0 0 chr5 145160138 145160276 -7376983 + B1_Mus1 SINE Alu 2 139 -9 4 1692 249 57 0 0 chr5 145160276 145160311 -7376948 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4 1692 346 197 0 0 chr5 145160796 145160857 -7376402 + MIR SINE MIR 61 121 -141 4 1692 210 355 12 25 chr5 145160953 145161034 -7376225 + PB1D7 SINE Alu 18 97 -23 4 1692 267 143 0 51 chr5 145161027 145161086 -7376173 + PB1D10 SINE Alu 59 114 -3 5 1692 617 154 458 0 chr5 145161182 145161324 -7375935 + B3 SINE B2 2 208 -8 5 1692 216 0 0 0 chr5 145161324 145161348 -7375911 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5 1692 985 116 13 20 chr5 145161363 145161513 -7375746 - B1_Mur4 SINE Alu 0 150 2 5 1692 303 291 75 12 chr5 145161514 145161594 -7375665 + B4A SINE B4 200 284 -8 5 1692 816 87 0 0 chr5 145161611 145161738 -7375521 + (CA)n Simple_repeat Simple_repeat 1 127 0 5 1692 455 222 62 31 chr5 145161738 145161868 -7375391 + L1MD1 LINE L1 6109 6242 0 5 1692 398 257 83 0 chr5 145162726 145162835 -7374424 + B1F SINE Alu 3 120 -29 5 1692 251 236 110 22 chr5 145163268 145163359 -7373900 - RMER15 LTR ERVL -29 546 448 5 1692 571 298 22 27 chr5 145163441 145163624 -7373635 - B3A SINE B2 -16 182 1 5 1692 385 296 83 90 chr5 145163660 145163816 -7373443 - RMER15 LTR ERVL -128 447 293 5 1692 839 102 0 8 chr5 145164039 145164168 -7373091 + (TTTC)n Simple_repeat Simple_repeat 3 130 0 5 1692 324 26 0 0 chr5 145164169 145164207 -7373052 - B2_Mm2 SINE B2 -66 129 92 5 1692 540 289 58 19 chr5 145164630 145164785 -7372474 - ID_B1 SINE B4 -4 220 60 5 1692 346 274 0 0 chr5 145164860 145164933 -7372326 - ID4_ SINE ID -10 73 1 5 1692 1176 64 13 0 chr5 145164933 145165089 -7372170 - ZP3AR Satellite Satellite -11 201 44 5 1692 638 278 128 0 chr5 145165649 145165836 -7371423 - B4 SINE B4 0 292 82 5 1692 939 95 79 14 chr5 145165841 145165980 -7371279 - B1_Mur4 SINE Alu -1 149 2 5 1692 245 266 36 60 chr5 145165992 145166076 -7371183 - ID4 SINE ID 0 83 2 5 1692 218 369 12 12 chr5 145166121 145166206 -7371053 + MIRc SINE MIR 23 107 -161 5 1692 530 193 72 18 chr5 145166428 145166539 -7370720 + PB1D10 SINE Alu 1 117 0 5 1692 23 0 0 0 chr5 145166618 145166641 -7370618 + AT_rich Low_complexity Low_complexity 1 23 0 5 1692 258 299 71 18 chr5 145166645 145166815 -7370444 - RLTR21 LTR ERVK -318 1254 1076 5 1692 565 263 43 152 chr5 145166893 145167221 -7370038 - B4A SINE B4 0 292 1 5 1692 342 0 0 0 chr5 145167692 145167730 -7369529 + (T)n Simple_repeat Simple_repeat 1 38 0 5 1692 433 173 61 12 chr5 145167776 145167858 -7369401 + B4 SINE B4 1 86 -206 5 1692 24 32 0 0 chr5 145168419 145168450 -7368809 + AT_rich Low_complexity Low_complexity 1 31 0 5 1692 598 312 19 25 chr5 145168465 145168626 -7368633 - RSINE1 SINE B4 -4 161 2 5 1692 589 264 278 19 chr5 145168676 145168892 -7368367 + B4 SINE B4 2 273 -19 5 1692 213 121 0 0 chr5 145168905 145168938 -7368321 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1692 840 125 0 30 chr5 145168938 145169070 -7368189 + B1_Mus1 SINE Alu 6 133 -15 5 1692 252 286 27 25 chr5 145169934 145170057 -7367202 + B4A SINE B4 1 172 -120 5 1692 1015 188 94 19 chr5 145170069 145170335 -7366924 + Lx8 LINE L1 7176 7461 -12 5 1692 317 243 14 0 chr5 145170342 145170416 -7366843 + B4A SINE B4 200 274 -18 5 1692 306 0 0 0 chr5 145170535 145170569 -7366690 + (TG)n Simple_repeat Simple_repeat 2 35 0 5 1692 323 260 48 48 chr5 145171109 145171214 -7366045 - MTEa LTR MaLR 0 379 275 5 1692 705 266 87 20 chr5 145171362 145171558 -7365701 - ID_B1 SINE B4 -14 210 2 5 1692 670 219 235 10 chr5 145171826 145172077 -7365182 - MTD LTR MaLR -14 405 130 5 1692 545 271 77 22 chr5 145172172 145172353 -7364906 - MTD LTR MaLR -224 195 5 5 1692 250 270 127 0 chr5 145173049 145173112 -7364147 + RSINE1 SINE B4 4 74 -91 5 1692 838 219 10 44 chr5 145173248 145173453 -7363806 + B3A SINE B2 1 198 0 5 1692 459 0 0 0 chr5 145173506 145173557 -7363702 + (TC)n Simple_repeat Simple_repeat 1 51 0 5 1692 396 0 0 0 chr5 145173557 145173600 -7363659 + (CA)n Simple_repeat Simple_repeat 1 44 0 5 1692 601 232 0 9 chr5 145174344 145174457 -7362802 - ID_B1 SINE B4 -108 116 5 5 1692 420 20 0 0 chr5 145174491 145174540 -7362719 + (TATG)n Simple_repeat Simple_repeat 4 52 0 5 1692 550 200 100 0 chr5 145174582 145174682 -7362577 - RSINE1 SINE B4 -36 129 20 5 1692 1211 74 51 0 chr5 145174699 145174874 -7362385 + B2_Mm2 SINE B2 8 191 -4 5 1692 599 172 20 0 chr5 145174934 145175033 -7362226 + ORR1D1 LTR MaLR 273 373 -1 5 1692 1221 109 0 1 chr5 145175066 145175861 -7361398 + (TG)n Simple_repeat Simple_repeat 1 793 0 5 1692 596 299 30 52 chr5 145175887 145176120 -7361139 + ORR1E LTR MaLR 6 233 -126 5 1692 1287 247 26 51 chr5 145176141 145176453 -7360806 + ORR1E LTR MaLR 18 321 -38 5 1692 789 208 14 7 chr5 145176475 145176620 -7360639 - B1_Mur3 SINE Alu -1 148 3 5 1692 773 227 45 28 chr5 145176654 145176831 -7360428 - B3A SINE B2 -18 180 1 5 1692 320 279 46 37 chr5 145176871 145176979 -7360280 + ORR1E LTR MaLR 271 379 0 5 1692 371 258 40 104 chr5 145177083 145177256 -7360003 - B2_Mm2 SINE B2 0 195 34 5 1692 644 260 27 0 chr5 145177255 145177405 -7359854 + B4 SINE B4 121 274 -18 5 1692 387 0 0 0 chr5 145177467 145177510 -7359749 + (CA)n Simple_repeat Simple_repeat 1 43 0 5 1692 480 239 38 23 chr5 145177646 145177779 -7359480 + MamRep605 Unknown Unknown 573 707 -169 5 1692 768 74 0 0 chr5 145178069 145178177 -7359082 + (TC)n Simple_repeat Simple_repeat 1 108 0 5 1692 402 21 0 0 chr5 145178178 145178225 -7359034 + (TA)n Simple_repeat Simple_repeat 1 47 0 5 1692 730 290 73 59 chr5 145178241 145178527 -7358732 - B4A SINE B4 -1 291 2 5 1692 603 312 62 5 chr5 145178717 145178913 -7358346 - B3A SINE B2 -5 211 5 5 1692 486 0 0 0 chr5 145179203 145179257 -7358002 + (CA)n Simple_repeat Simple_repeat 2 55 0 5 1692 1273 220 137 32 chr5 145179350 145179628 -7357631 + MTEb LTR MaLR 1 323 -56 5 1692 561 294 39 0 chr5 145179628 145179781 -7357478 - RSINE1 SINE B4 -6 159 1 5 1692 1273 220 137 32 chr5 145179781 145179845 -7357414 + MTEb LTR MaLR 324 379 0 5 1692 44 47 0 23 chr5 145180444 145180496 -7356763 + AT_rich Low_complexity Low_complexity 1 52 0 5 1692 910 144 58 0 chr5 145180496 145180635 -7356624 - B1_Mur3 SINE Alu -1 148 2 5 1692 44 47 0 23 chr5 145180635 145180669 -7356590 + AT_rich Low_complexity Low_complexity 1 33 0 5 1692 687 229 0 59 chr5 145180693 145180846 -7356413 - RSINE1 SINE B4 -19 146 3 5 1692 208 238 0 0 chr5 145181268 145181310 -7355949 - MIRc SINE MIR -118 150 109 5 1692 601 214 254 6 chr5 145181491 145181660 -7355599 - ID_B1 SINE B4 -12 212 2 5 1692 321 208 0 77 chr5 145181862 145181940 -7355319 + RSINE1 SINE B4 47 118 -47 5 1692 264 160 94 16 chr5 145181997 145182011 -7355248 + PB1D7 SINE Alu 44 87 -40 5 1692 297 140 140 0 chr5 145182011 145182068 -7355191 + ID_B1 SINE B4 146 210 -14 5 1692 258 319 16 117 chr5 145182563 145182691 -7354568 - MIRc SINE MIR -64 204 90 5 1692 293 331 7 101 chr5 145182833 145182981 -7354278 + LTR81C LTR ERV1? 1020 1153 0 5 1692 290 167 17 0 chr5 145183100 145183160 -7354099 + GA-rich Low_complexity Low_complexity 2 62 0 5 1692 434 272 29 7 chr5 145183169 145183306 -7353953 + B1F SINE Alu 2 141 -8 5 1692 248 165 11 45 chr5 145183417 145183506 -7353753 + GA-rich Low_complexity Low_complexity 1 86 0 5 1692 229 217 15 118 chr5 145183538 145183567 -7353692 + RSINE1 SINE B4 2 30 -135 5 1692 3347 44 3 0 chr5 145183567 145183951 -7353308 + IAPEY_LTR LTR ERVK 1 385 0 5 1692 229 217 15 118 chr5 145183951 145183989 -7353270 + RSINE1 SINE B4 31 62 -103 5 1692 378 0 0 0 chr5 145184021 145184063 -7353196 + (CA)n Simple_repeat Simple_repeat 1 42 0 5 1692 253 217 0 0 chr5 145184083 145184129 -7353130 + B1_Mur1 SINE Alu 96 141 -8 5 1692 429 109 0 0 chr5 145184129 145184193 -7353066 + (GGGA)n Simple_repeat Simple_repeat 1 64 0 5 1692 234 208 0 0 chr5 145184342 145184395 -7352864 + C-rich Low_complexity Low_complexity 1 53 0 5 1692 565 276 0 0 chr5 145184412 145184528 -7352731 - B1F1 SINE Alu 0 149 34 5 1692 966 144 0 0 chr5 145185396 145185576 -7351683 + (CA)n Simple_repeat Simple_repeat 1 180 0 5 1692 812 282 42 4 chr5 145185600 145185863 -7351396 - B4A SINE B4 -18 274 2 5 1692 993 220 40 0 chr5 145186636 145186836 -7350423 + ID_B1 SINE B4 5 212 -12 5 1692 245 295 1 41 chr5 145186849 145186983 -7350276 - MER74B LTR ERVL -83 539 352 5 1692 360 322 52 28 chr5 145186988 145187199 -7350060 - LTR31 LTR ERV1 -32 587 372 5 1692 582 270 9 4 chr5 145187263 145187392 -7349867 + B3A SINE B2 1 133 -60 5 1692 350 90 30 0 chr5 145187395 145187462 -7349797 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 5 1692 432 0 0 0 chr5 145187462 145187510 -7349749 + (CA)n Simple_repeat Simple_repeat 1 48 0 5 1692 584 299 25 20 chr5 145187607 145187805 -7349454 - MER74B LTR ERVL -196 426 228 5 1692 482 241 0 0 chr5 145187835 145187922 -7349337 + B4 SINE B4 1 87 -205 5 1692 271 224 0 0 chr5 145187973 145188031 -7349228 - Lx8 LINE L1 -378 7095 7038 5 1692 504 244 0 0 chr5 145188041 145188205 -7349054 + (CA)n Simple_repeat Simple_repeat 1 164 0 5 1692 284 296 0 8 chr5 145188206 145188461 -7348798 + (CATA)n Simple_repeat Simple_repeat 1 252 0 5 1692 983 316 119 43 chr5 145188472 145188961 -7348298 - MER21B LTR ERV1 -30 833 308 5 1692 1061 130 6 0 chr5 145189043 145189204 -7348055 - URR1A DNA MER1_type 0 226 65 5 1692 1177 267 49 69 chr5 145189367 145189717 -7347542 - MTE2b LTR MaLR 0 379 37 5 1692 1379 146 45 38 chr5 145190011 145190028 -7347231 - RMER4B LTR ERVK -319 266 249 5 1692 248 0 0 30 chr5 145190028 145190061 -7347198 + (CAG)n Simple_repeat Simple_repeat 1 32 0 5 1692 1379 146 45 38 chr5 145190061 145190307 -7346952 - RMER4B LTR ERVK -337 248 1 5 1692 522 204 0 0 chr5 145190353 145190446 -7346813 + B3A SINE B2 1 93 -105 6 1692 250 321 189 8 chr5 145190446 145190485 -7346774 + RSINE1 SINE B4 2 157 -8 6 1692 411 283 58 58 chr5 145190484 145190638 -7346621 - MLT1A LTR MaLR -189 185 32 6 1692 378 207 167 26 chr5 145190785 145190899 -7346360 + RMER15 LTR ERVL 2 131 -444 6 1692 396 331 0 15 chr5 145190943 145191069 -7346190 + RMER15 LTR ERVL 306 429 -146 6 1692 1078 239 28 128 chr5 145191069 145191545 -7345714 + MTD LTR MaLR 1 404 -15 6 1692 537 199 0 0 chr5 145192788 145192924 -7344335 + (TG)n Simple_repeat Simple_repeat 1 136 0 6 1692 348 179 0 25 chr5 145192924 145193004 -7344255 - B4A SINE B4 0 292 215 6 1692 545 275 93 113 chr5 145193436 145193727 -7343532 - B4 SINE B4 0 292 8 6 1692 292 230 0 86 chr5 145193720 145193801 -7343458 - B4A SINE B4 -55 237 164 6 1692 319 120 0 0 chr5 145193835 145193885 -7343374 - MT2A LTR ERVL 0 584 535 6 1692 276 204 0 53 chr5 145193912 145193969 -7343290 + PB1D9 SINE Alu 2 55 -65 6 1692 696 116 0 37 chr5 145193984 145194118 -7343141 + (CAGAGA)n Simple_repeat Simple_repeat 6 134 0 6 1692 289 195 19 122 chr5 145194118 145194219 -7343040 + PB1D9 SINE Alu 42 135 -12 6 1692 624 27 0 0 chr5 145194221 145194295 -7342964 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 6 1692 1212 203 301 20 chr5 145194296 145194652 -7342607 - MT2A LTR ERVL -76 457 2 6 1692 304 303 23 47 chr5 145194657 145194785 -7342474 - Lx8 LINE L1 -151 7322 7198 6 1692 571 319 19 5 chr5 145194783 145194994 -7342265 + Lx8 LINE L1 6998 7211 -262 6 1692 592 318 7 0 chr5 145195214 145195365 -7341894 - MER3 DNA MER1_type -57 152 1 6 1692 418 225 0 0 chr5 145195444 145195524 -7341735 + PB1D10 SINE Alu 38 117 0 6 1692 802 240 34 29 chr5 145195489 145195712 -7341547 + ZP3AR Satellite Satellite 1 224 0 6 1692 259 254 73 0 chr5 145195693 145195748 -7341511 + tRNA-Ala-GCY_ tRNA tRNA 2 60 -15 6 1692 369 257 28 28 chr5 145195859 145195967 -7341292 + PB1D10 SINE Alu 4 111 -6 6 1692 239 256 22 109 chr5 145196167 145196259 -7341000 + RSINE1 SINE B4 82 165 0 6 1692 650 90 18 0 chr5 145196262 145196373 -7340886 + (TCTCTG)n Simple_repeat Simple_repeat 2 114 0 6 1692 398 167 12 0 chr5 145196373 145196457 -7340802 + (CA)n Simple_repeat Simple_repeat 1 85 0 6 1692 560 179 71 9 chr5 145197055 145197168 -7340091 - PB1D7 SINE Alu 0 120 1 6 1692 1231 189 87 30 chr5 145197217 145197401 -7339858 + Lx9 LINE L1 7292 7482 -162 6 1692 1220 61 0 0 chr5 145197401 145197548 -7339711 + B1_Mus1 SINE Alu 2 148 0 6 1692 1231 189 87 30 chr5 145197548 145197696 -7339563 + Lx9 LINE L1 7483 7643 -1 6 1692 1387 117 50 27 chr5 145197988 145198208 -7339051 - URR1B DNA MER1_type 0 225 1 6 1692 553 232 96 0 chr5 145198316 145198441 -7338818 - ORR1E LTR MaLR -222 137 1 6 1692 1055 129 166 30 chr5 145198523 145198722 -7338537 + URR1A DNA MER1_type 1 226 0 6 1692 493 319 24 6 chr5 145198764 145198931 -7338328 - L2 LINE L2 -590 2829 2660 6 1692 889 87 94 0 chr5 145198995 145199122 -7338137 - MT2B LTR ERVL -462 139 1 6 1692 375 313 63 51 chr5 145199152 145199310 -7337949 + MER44D DNA MER2_type 55 214 -491 6 1692 1026 288 42 113 chr5 145199334 145199883 -7337376 + MER44D DNA MER2_type 194 703 -2 6 1692 639 273 23 0 chr5 145200766 145200894 -7336365 + RSINE1 SINE B4 34 164 -1 6 1692 542 199 18 21 chr5 145200929 145201216 -7336043 + GA-rich Low_complexity Low_complexity 1 286 0 6 1692 377 303 0 60 chr5 145201229 145201345 -7335914 - PB1D10 SINE Alu -1 116 8 6 1692 428 308 10 0 chr5 145201248 145201352 -7335907 - ID_B1 SINE B4 -39 185 81 6 1692 553 278 28 7 chr5 145201389 145201534 -7335725 - B1F SINE Alu 0 149 2 6 1692 401 318 9 0 chr5 145201535 145201645 -7335614 + MLT1C LTR MaLR 353 463 -4 6 1692 652 276 119 15 chr5 145201659 145201920 -7335339 + B4 SINE B4 2 289 -3 6 1692 1099 78 25 36 chr5 145201998 145202355 -7334904 + (CA)n Simple_repeat Simple_repeat 1 352 0 6 1692 397 280 41 54 chr5 145202575 145202750 -7334509 - B4A SINE B4 -60 164 2 6 1692 567 314 19 6 chr5 145203104 145203261 -7333998 + RSINE1 SINE B4 2 160 -5 6 1692 613 269 6 12 chr5 145203286 145203448 -7333811 + RSINE1 SINE B4 4 164 -1 6 1692 1941 217 66 5 chr5 145203929 145204355 -7332904 - Lx6 LINE L1 -27 7433 6982 6 1692 2142 130 6 58 chr5 145204355 145204698 -7332561 - ORR1A4 LTR MaLR 0 329 5 6 1692 561 167 18 18 chr5 145204712 145204822 -7332437 - ORR1A4 LTR MaLR -219 110 1 6 1692 1000 289 18 68 chr5 145204822 145205216 -7332043 - Lx5 LINE L1 -443 6607 6234 6 1692 1040 239 91 37 chr5 145205284 145205695 -7331564 + RMER15 LTR ERVL 48 575 0 6 1692 407 213 266 14 chr5 145205863 145206006 -7331253 + B3A SINE B2 2 180 -18 6 1692 24 0 0 0 chr5 145206244 145206268 -7330991 + AT_rich Low_complexity Low_complexity 1 24 0 6 1692 901 167 0 7 chr5 145206273 145206418 -7330841 - B1_Mur4 SINE Alu -6 144 1 6 1692 228 328 15 30 chr5 145206423 145206446 -7330813 + ID SINE ID 60 81 -143 6 1692 247 277 229 1 chr5 145206446 145206530 -7330729 + B1F1 SINE Alu 1 102 -47 6 1692 528 59 0 0 chr5 145206530 145206598 -7330661 + (GGGA)n Simple_repeat Simple_repeat 2 69 0 6 1692 241 279 196 41 chr5 145206598 145206610 -7330649 + B1_Mur2 SINE Alu 103 112 -37 6 1692 383 247 25 0 chr5 145206899 145206980 -7330279 - ID2 SINE ID 0 83 1 6 1692 975 93 40 0 chr5 145206980 145207131 -7330128 - ZP3AR Satellite Satellite -11 201 45 6 1692 854 285 35 93 chr5 145208153 145208640 -7328619 + RMER15 LTR ERVL 1 573 -2 6 1692 900 222 136 0 chr5 145208642 145208840 -7328419 - B4A SINE B4 -61 231 7 6 1692 256 241 160 96 chr5 145208883 145209039 -7328220 + MTEa LTR MaLR 207 372 -7 6 1692 570 339 74 56 chr5 145209142 145209411 -7327848 + B4 SINE B4 1 274 -18 6 1692 398 94 16 0 chr5 145209522 145209586 -7327673 + (CA)n Simple_repeat Simple_repeat 1 65 0 6 1692 637 321 31 24 chr5 145209833 145210088 -7327171 + Tigger14a DNA MER2_type 20 276 -48 6 1692 792 239 0 23 chr5 145210178 145210349 -7326910 + B4A SINE B4 55 221 -71 6 1692 297 227 15 0 chr5 145210378 145210444 -7326815 + B4A SINE B4 216 282 -10 6 1692 234 0 0 0 chr5 145210470 145210496 -7326763 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1692 461 202 0 0 chr5 145211042 145211121 -7326138 - ID4 SINE ID -4 79 1 6 1692 1462 61 5 5 chr5 145211121 145211320 -7325939 - ZP3AR Satellite Satellite -11 201 3 6 1692 226 241 0 65 chr5 145211271 145211333 -7325926 - ID4 SINE ID -25 58 1 6 1692 662 261 73 11 chr5 145211355 145211530 -7325729 - ID_B1 SINE B4 -2 222 37 6 1692 953 210 116 58 chr5 145211530 145211788 -7325471 - MTE2a LTR MaLR 0 379 107 6 1692 2614 133 159 18 chr5 145211790 145211824 -7325435 - RMER15 LTR ERVL 0 575 542 6 1692 378 0 0 0 chr5 145211824 145211866 -7325393 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1692 2614 133 159 18 chr5 145211866 145211963 -7325296 - RMER15 LTR ERVL -34 541 427 6 1692 3090 167 148 11 chr5 145211963 145212611 -7324648 + RMER19A LTR ERVK 1 737 0 6 1692 2614 133 159 18 chr5 145212611 145212982 -7324277 - RMER15 LTR ERVL -149 426 4 6 1692 757 257 30 71 chr5 145213235 145213432 -7323827 + B3A SINE B2 7 195 -3 6 1692 1866 118 162 53 chr5 145213486 145213845 -7323414 - RMER10B LTR ERVL 0 398 1 6 1692 209 358 35 44 chr5 145213854 145213968 -7323291 - MIRc SINE MIR -129 147 35 6 1692 24 32 0 0 chr5 145214509 145214540 -7322719 + AT_rich Low_complexity Low_complexity 1 31 0 6 1692 213 241 0 0 chr5 145214540 145214594 -7322665 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1692 871 155 11 80 chr5 145214594 145214769 -7322490 - RSINE1 SINE B4 0 165 3 6 1692 209 214 0 0 chr5 145214882 145214924 -7322335 + (TATG)n Simple_repeat Simple_repeat 2 43 0 6 1692 1057 213 112 39 chr5 145214931 145215190 -7322069 - B4 SINE B4 0 292 15 6 1692 273 281 122 16 chr5 145215331 145215454 -7321805 - B3A SINE B2 0 198 63 6 1692 1310 99 39 0 chr5 145215485 145215666 -7321593 - B2_Mm2 SINE B2 -6 189 2 6 1692 421 212 0 0 chr5 145215898 145215978 -7321281 + B4 SINE B4 1 80 -212 6 1692 305 308 17 100 chr5 145216055 145216228 -7321031 - B4 SINE B4 -120 172 3 6 1692 290 269 33 60 chr5 145216229 145216365 -7320894 + L1MD2 LINE L1 6208 6338 -21 6 1692 2316 89 35 0 chr5 145216365 145216681 -7320578 - ORR1A2 LTR MaLR 0 327 1 6 1692 274 269 33 60 chr5 145216681 145216694 -7320565 + L1MD2 LINE L1 7869 7881 -1 6 1692 534 214 54 0 chr5 145216723 145216835 -7320424 + RSINE1 SINE B4 3 120 -45 6 1692 276 30 0 0 chr5 145216854 145216887 -7320372 + (CA)n Simple_repeat Simple_repeat 1 33 0 6 1692 387 220 0 0 chr5 145216993 145217125 -7320134 + (TG)n Simple_repeat Simple_repeat 1 132 0 6 1692 603 262 35 0 chr5 145217125 145217266 -7319993 - B3A SINE B2 -13 185 40 6 1692 670 224 91 0 chr5 145217579 145217722 -7319537 - B3A SINE B2 -41 157 2 6 1692 467 323 25 25 chr5 145217841 145218003 -7319256 - B4 SINE B4 -65 227 66 6 1692 433 288 43 18 chr5 145218512 145218675 -7318584 + B4A SINE B4 10 176 -116 6 1692 396 0 0 0 chr5 145219199 145219243 -7318016 + (CA)n Simple_repeat Simple_repeat 2 45 0 6 1692 180 0 0 0 chr5 145219493 145219513 -7317746 + (GA)n Simple_repeat Simple_repeat 1 20 0 6 1692 665 201 96 7 chr5 145219527 145219662 -7317597 + B1F SINE Alu 2 148 -1 6 1692 468 0 0 0 chr5 145219959 145220011 -7317248 + (GA)n Simple_repeat Simple_repeat 1 52 0 6 1692 643 284 42 89 chr5 145220012 145220248 -7317011 + MTE2a LTR MaLR 1 225 -154 6 1692 1179 90 0 0 chr5 145220257 145220423 -7316836 + (TCCCC)n Simple_repeat Simple_repeat 3 168 0 6 1692 2062 212 36 31 chr5 145220455 145220933 -7316326 + RMER20A LTR ERVK 15 494 -22 6 1692 3305 122 15 34 chr5 145220934 145221466 -7315793 + RLTR28 LTR ERVL 1 522 -2 6 1692 686 238 174 52 chr5 145221825 145222229 -7315030 + RMER15 LTR ERVL 9 537 -38 6 1692 761 260 58 25 chr5 145222229 145222470 -7314789 - RMER15 LTR ERVL -52 523 275 7 1692 1071 218 248 81 chr5 145222934 145223293 -7313966 - RLTR33 LTR ERVK -85 593 175 7 1692 726 229 39 72 chr5 145223383 145223590 -7313669 - B4 SINE B4 -90 202 3 7 1692 689 251 157 54 chr5 145224167 145224222 -7313037 + B4 SINE B4 1 67 -225 7 1692 1946 108 165 25 chr5 145224222 145224544 -7312715 - ORR1B2 LTR MaLR 0 367 1 7 1692 689 251 157 54 chr5 145224544 145224749 -7312510 + B4 SINE B4 68 288 -4 7 1692 334 91 0 0 chr5 145224770 145224814 -7312445 + HAL1-3A_ME LINE L1 1976 2019 -839 7 1692 2686 34 0 42 chr5 145224823 145225159 -7312100 + RLTRETN_Mm LTR ERVK 1 322 0 7 1692 23 33 0 0 chr5 145225412 145225442 -7311817 + AT_rich Low_complexity Low_complexity 1 30 0 7 1692 238 259 17 0 chr5 145225472 145225530 -7311729 + (TG)n Simple_repeat Simple_repeat 2 60 0 7 1692 782 262 61 61 chr5 145225541 145225818 -7311441 - B4A SINE B4 -15 277 1 7 1692 300 53 0 0 chr5 145225932 145225970 -7311289 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1692 258 56 0 0 chr5 145225970 145226006 -7311253 + (GA)n Simple_repeat Simple_repeat 2 37 0 7 1692 326 269 99 27 chr5 145226006 145226028 -7311231 - ID_B1 SINE B4 -11 213 188 7 1692 1291 57 50 22 chr5 145226028 145226208 -7311051 - B2_Mm1t SINE B2 -8 185 1 7 1692 326 269 99 27 chr5 145226208 145226296 -7310963 - ID_B1 SINE B4 -37 187 95 7 1692 242 300 24 36 chr5 145226224 145226307 -7310952 - PB1D10 SINE Alu -35 82 1 7 1692 1244 47 0 0 chr5 145226688 145226836 -7310423 - B1_Mus1 SINE Alu 0 148 1 7 1692 269 322 22 11 chr5 145226836 145226927 -7310332 + PB1D10 SINE Alu 14 105 -12 7 1692 1245 257 97 26 chr5 145226961 145227301 -7309958 + MTE2b LTR MaLR 3 366 -13 7 1692 384 22 0 0 chr5 145227519 145227564 -7309695 + (TG)n Simple_repeat Simple_repeat 1 45 0 7 1693 362 255 9 43 chr5 145228356 145228471 -7308788 - PB1D10 SINE Alu -6 111 1 7 1693 228 214 68 8 chr5 145228483 145228615 -7308644 + (TA)n Simple_repeat Simple_repeat 1 140 0 7 1693 211 273 10 29 chr5 145228591 145228693 -7308566 + (TAAA)n Simple_repeat Simple_repeat 3 102 0 7 1693 1193 254 7 7 chr5 145228764 145229041 -7308218 - B4A SINE B4 -14 278 2 7 1693 578 254 94 73 chr5 145229661 145229809 -7307450 - B4A SINE B4 -21 271 116 7 1693 2446 95 3 0 chr5 145229809 145230134 -7307125 - ORR1A3 LTR MaLR 0 326 1 7 1693 578 254 94 73 chr5 145230134 145230174 -7307085 - B4A SINE B4 -177 115 79 7 1693 938 232 170 57 chr5 145230174 145230439 -7306820 - MTE2a LTR MaLR 0 379 85 7 1693 305 319 50 83 chr5 145230606 145230883 -7306376 - L2 LINE L2 -1474 1945 1678 7 1693 1129 162 68 19 chr5 145230911 145231118 -7306141 + URR1B DNA MER1_type 1 217 -8 7 1693 325 218 419 12 chr5 145231161 145231328 -7305931 - B4A SINE B4 -52 240 6 7 1693 383 269 0 65 chr5 145231358 145231481 -7305778 - PB1D10 SINE Alu -1 116 2 7 1693 1116 133 0 0 chr5 145231687 145231867 -7305392 + (GAA)n Simple_repeat Simple_repeat 1 180 0 7 1693 393 149 0 0 chr5 145231867 145231934 -7305325 + (GGAGAA)n Simple_repeat Simple_repeat 1 67 0 7 1693 938 233 106 0 chr5 145231935 145232124 -7305135 - ID_B1 SINE B4 -13 211 3 7 1693 221 191 24 0 chr5 145232132 145232174 -7305085 - L2b LINE L2 -15 3360 3318 7 1693 207 0 0 0 chr5 145232383 145232406 -7304853 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7 1693 678 289 7 0 chr5 145232421 145232563 -7304696 + RSINE1 SINE B4 3 145 -20 7 1693 222 128 80 23 chr5 145232587 145232675 -7304584 + (TCTA)n Simple_repeat Simple_repeat 4 96 0 7 1693 779 160 6 0 chr5 145232698 145232873 -7304386 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 7 1693 1045 96 11 0 chr5 145232909 145233087 -7304172 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 7 1693 1184 40 7 0 chr5 145233445 145233595 -7303664 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 7 1693 290 244 0 49 chr5 145233596 145233678 -7303581 + PB1D10 SINE Alu 5 82 -35 7 1693 541 280 78 30 chr5 145233636 145233836 -7303423 + B4 SINE B4 39 239 -53 7 1693 240 258 182 0 chr5 145234343 145234409 -7302850 - ID2 SINE ID -5 78 1 7 1693 250 360 35 9 chr5 145234475 145234590 -7302669 - PB1D7 SINE Alu -2 118 1 7 1693 258 211 316 0 chr5 145234959 145235035 -7302224 - PB1D10 SINE Alu -17 100 1 7 1693 2230 45 24 10 chr5 145235073 145235364 -7301895 + L1_Mus1 LINE L1 6273 6567 0 7 1693 1285 170 19 0 chr5 145235813 145236019 -7301240 + B3 SINE B2 2 211 -5 7 1693 238 226 14 114 chr5 145236188 145236258 -7301001 - ID4_ SINE ID -20 63 1 7 1693 1326 61 82 0 chr5 145236215 145236634 -7300625 - ZP3AR Satellite Satellite -20 453 1 7 1693 5342 147 36 14 chr5 145237431 145238313 -7298946 - RMER19B LTR ERVK 0 902 1 7 1693 207 69 0 0 chr5 145238515 145238544 -7298715 + (TGG)n Simple_repeat Simple_repeat 1 29 0 7 1693 1210 237 14 43 chr5 145238618 145238823 -7298436 - B4 SINE B4 -18 274 74 7 1693 495 0 0 0 chr5 145238823 145238878 -7298381 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 1693 1210 237 14 43 chr5 145238878 145238954 -7298305 - B4 SINE B4 -219 73 1 7 1693 199 300 85 91 chr5 145239241 145239406 -7297853 + L2c LINE L2 2957 3120 -267 7 1693 951 249 65 118 chr5 145239418 145239641 -7297618 + MTE2a LTR MaLR 4 190 -189 7 1693 221 0 35 0 chr5 145239641 145239670 -7297589 + (CAAG)n Simple_repeat Simple_repeat 1 30 0 7 1693 951 249 65 118 chr5 145239670 145239843 -7297416 + MTE2a LTR MaLR 191 379 0 7 1693 377 269 28 9 chr5 145239947 145240056 -7297203 - B4A SINE B4 -181 111 1 7 1693 258 81 0 0 chr5 145240304 145240341 -7296918 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 7 1693 366 296 26 78 chr5 145240472 145240626 -7296633 - B4A SINE B4 -145 147 2 7 1693 1182 97 198 31 chr5 145241117 145241309 -7295950 + URR1A DNA MER1_type 3 226 0 7 1693 519 252 9 0 chr5 145241349 145241464 -7295795 - PB1D10 SINE Alu 0 117 2 7 1693 386 39 19 0 chr5 145241495 145241547 -7295712 + (TCC)n Simple_repeat Simple_repeat 3 55 0 7 1693 252 285 173 79 chr5 145242031 145242096 -7295163 - ID_B1 SINE B4 -3 221 147 7 1693 2631 77 0 9 chr5 145242096 145242426 -7294833 - ORR1A2 LTR MaLR 0 327 1 7 1693 293 304 33 42 chr5 145242426 145242480 -7294779 - PB1D7 SINE Alu -64 56 1 7 1693 252 285 173 79 chr5 145242480 145242562 -7294697 - ID_B1 SINE B4 -78 146 2 7 1693 439 213 43 0 chr5 145242562 145242608 -7294651 + B3A SINE B2 115 164 -34 7 1693 321 26 0 0 chr5 145242611 145242649 -7294610 + (CA)n Simple_repeat Simple_repeat 1 38 0 7 1693 510 17 0 0 chr5 145242649 145242707 -7294552 + (GA)n Simple_repeat Simple_repeat 2 60 0 7 1693 310 262 72 36 chr5 145242841 145242952 -7294307 - Tigger5 DNA MER2_type 0 2406 2292 7 1693 297 0 0 0 chr5 145242960 145242993 -7294266 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 7 1693 304 320 8 8 chr5 145243475 145243598 -7293661 - RLTR42-int LTR ERVK -4155 1367 1245 7 1693 300 53 0 0 chr5 145243699 145243737 -7293522 + (TG)n Simple_repeat Simple_repeat 1 38 0 7 1693 645 69 0 0 chr5 145245238 145245325 -7291934 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 7 1693 534 228 125 8 chr5 145245327 145245455 -7291804 - ID_B1 SINE B4 -11 213 71 7 1693 459 304 118 7 chr5 145245451 145245587 -7291672 - B3A SINE B2 -47 151 1 7 1693 664 247 40 7 chr5 145245596 145245747 -7291512 - B4 SINE B4 -135 157 2 7 1693 198 254 0 0 chr5 145246333 145246400 -7290859 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 7 1693 237 333 17 9 chr5 145246416 145246531 -7290728 + (TAGA)n Simple_repeat Simple_repeat 4 119 0 7 1693 326 305 73 37 chr5 145246531 145246667 -7290592 - RMER15 LTR ERVL 0 575 435 7 1693 382 284 25 0 chr5 145246750 145246986 -7290273 + (TGGA)n Simple_repeat Simple_repeat 1 242 0 7 1693 304 345 107 6 chr5 145247823 145247992 -7289267 + MLT1A1 LTR MaLR 8 193 -215 7 1693 234 247 0 0 chr5 145248183 145248260 -7288999 + (TGGA)n Simple_repeat Simple_repeat 1 77 0 7 1693 204 245 0 0 chr5 145248403 145248456 -7288803 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 7 1693 392 322 29 0 chr5 145248505 145248603 -7288656 + (TGGA)n Simple_repeat Simple_repeat 1 102 0 7 1693 321 26 0 0 chr5 145248603 145248641 -7288618 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1693 392 322 29 0 chr5 145248641 145248781 -7288478 + (TGGA)n Simple_repeat Simple_repeat 1 144 0 7 1693 188 177 12 71 chr5 145248801 145248886 -7288373 + (TGGA)n Simple_repeat Simple_repeat 4 83 0 7 1693 376 265 6 5 chr5 145249911 145249985 -7287274 - B4 SINE B4 -11 281 218 7 1693 2819 128 122 15 chr5 145249985 145250183 -7287076 + RLTR11A LTR ERVK 1 229 -299 7 1693 531 45 0 0 chr5 145250183 145250249 -7287010 + (GGA)n Simple_repeat Simple_repeat 2 67 0 7 1693 2819 128 122 15 chr5 145250249 145250524 -7286735 + RLTR11A LTR ERVK 230 524 -4 7 1693 376 318 94 79 chr5 145250524 145250736 -7286523 - B4 SINE B4 -75 217 1 7 1693 997 221 49 33 chr5 145250736 145250963 -7286296 - B4A SINE B4 -61 231 1 7 1693 414 69 0 0 chr5 145252017 145252075 -7285184 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1693 645 273 143 73 chr5 145252090 145252363 -7284896 - B4 SINE B4 0 292 1 7 1693 202 61 0 57 chr5 145252433 145252468 -7284791 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1693 581 344 57 35 chr5 145252605 145252888 -7284371 - B4A SINE B4 -2 290 2 7 1693 513 261 27 0 chr5 145252931 145253042 -7284217 - PB1D7 SINE Alu -6 114 1 7 1693 404 294 39 0 chr5 145253893 145253995 -7283264 - ID_B1 SINE B4 -34 190 85 7 1693 391 221 16 0 chr5 145254045 145254167 -7283092 + (TA)n Simple_repeat Simple_repeat 1 124 0 7 1693 36 82 0 0 chr5 145254174 145254259 -7283000 + AT_rich Low_complexity Low_complexity 1 85 0 7 1693 608 240 177 24 chr5 145254343 145254594 -7282665 - B4A SINE B4 0 292 3 7 1693 419 183 101 34 chr5 145254796 145254915 -7282344 + MamRep605 Unknown Unknown 128 254 -622 7 1693 1301 251 61 10 chr5 145255009 145255319 -7281940 + MTEa LTR MaLR 51 376 -3 7 1693 1153 212 114 112 chr5 145255528 145255734 -7281525 - MTEa LTR MaLR 0 379 171 7 1693 1284 89 0 0 chr5 145255734 145255914 -7281345 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 8 1693 1153 212 114 112 chr5 145255914 145256083 -7281176 - MTEa LTR MaLR -209 170 3 7 1693 542 307 79 38 chr5 145256086 145256377 -7280882 - ORR1E LTR MaLR -56 303 1 8 1693 360 0 0 0 chr5 145256475 145256515 -7280744 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1693 295 187 116 30 chr5 145256520 145256610 -7280649 - B1F1 SINE Alu 0 149 55 8 1693 282 87 0 0 chr5 145256878 145256924 -7280335 + (TG)n Simple_repeat Simple_repeat 2 47 0 8 1693 755 295 74 30 chr5 145256974 145257243 -7280016 - B4 SINE B4 -10 282 2 8 1693 746 262 155 25 chr5 145257245 145257756 -7279503 - L1ME1 LINE L1 -354 5998 5405 8 1693 359 304 18 9 chr5 145257787 145257900 -7279359 - PB1D10 SINE Alu 0 117 4 8 1693 457 263 25 128 chr5 145257900 145258006 -7279253 - ID SINE ID -138 86 1 8 1693 1641 52 10 0 chr5 145257965 145258609 -7278650 - ZP3AR Satellite Satellite -23 650 1 8 1693 433 305 28 24 chr5 145258734 145258980 -7278279 - L1ME1 LINE L1 -4535 1880 1646 8 1693 231 114 0 0 chr5 145259004 145259039 -7278220 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 8 1693 189 0 0 0 chr5 145259039 145259060 -7278199 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1693 564 242 40 0 chr5 145259087 145259211 -7278048 - RSINE1 SINE B4 -33 132 4 8 1693 1299 101 6 11 chr5 145259234 145259415 -7277844 - B2_Mm2 SINE B2 -14 181 2 8 1693 312 300 93 70 chr5 145259613 145259742 -7277517 - L1ME1 LINE L1 -4956 1459 1328 8 1693 376 317 41 24 chr5 145259806 145259929 -7277330 + RSINE1 SINE B4 13 137 -28 8 1693 983 268 52 116 chr5 145260105 145260325 -7276934 - MTE2a LTR MaLR 0 379 171 8 1693 375 23 0 0 chr5 145260325 145260369 -7276890 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 8 1693 983 268 52 116 chr5 145260369 145260553 -7276706 - MTE2a LTR MaLR -209 170 1 8 1693 654 262 7 13 chr5 145261136 145261287 -7275972 + B3A SINE B2 2 151 -47 8 1693 750 220 47 99 chr5 145261302 145261514 -7275745 - B4 SINE B4 -2 290 90 8 1693 1037 19 0 59 chr5 145261521 145261741 -7275518 + (TG)n Simple_repeat Simple_repeat 1 206 0 8 1693 681 252 7 41 chr5 145261743 145261847 -7275412 - RSINE1 SINE B4 -22 143 43 8 1693 2355 89 6 21 chr5 145261847 145262179 -7275080 + ORR1A2 LTR MaLR 1 327 0 8 1693 681 252 7 41 chr5 145262179 145262219 -7275040 - RSINE1 SINE B4 -123 42 4 8 1693 375 23 0 0 chr5 145262231 145262275 -7274984 + (TA)n Simple_repeat Simple_repeat 2 45 0 8 1693 433 228 0 0 chr5 145262297 145262376 -7274883 - ID4_ SINE ID 0 83 5 8 1693 31 0 0 0 chr5 145262376 145262407 -7274852 + AT_rich Low_complexity Low_complexity 1 31 0 8 1693 240 35 0 0 chr5 145262407 145262436 -7274823 + (CA)n Simple_repeat Simple_repeat 2 30 0 8 1693 370 171 28 14 chr5 145262457 145262528 -7274731 - B4 SINE B4 -220 72 1 8 1693 259 222 0 0 chr5 145263242 145263287 -7273972 + ID4_ SINE ID 9 53 -30 8 1693 211 189 0 0 chr5 145263298 145263335 -7273924 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1693 559 296 76 87 chr5 145263341 145263629 -7273630 - B4 SINE B4 0 292 8 8 1693 483 157 0 0 chr5 145263709 145263798 -7273461 + (CA)n Simple_repeat Simple_repeat 2 90 0 8 1693 363 273 98 6 chr5 145263919 145264092 -7273167 - L1MC4a LINE L1 -1482 6400 6212 8 1693 216 243 28 37 chr5 145264168 145264244 -7273015 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 8 1693 1189 42 14 7 chr5 145264244 145264382 -7272877 + B1_Mus1 SINE Alu 1 140 -8 8 1693 183 42 0 0 chr5 145264382 145264406 -7272853 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 8 1693 216 243 28 37 chr5 145264412 145264442 -7272817 + (TATATG)n Simple_repeat Simple_repeat 3 31 0 8 1693 379 187 35 29 chr5 145264442 145264613 -7272646 + (TG)n Simple_repeat Simple_repeat 2 173 0 8 1693 876 280 27 38 chr5 145264683 145264976 -7272283 - B4A SINE B4 0 292 3 8 1693 237 167 0 0 chr5 145264987 145265041 -7272218 + CT-rich Low_complexity Low_complexity 3 56 0 8 1693 377 290 15 82 chr5 145265046 145265181 -7272078 - ID_B1 SINE B4 -23 201 76 8 1693 336 370 36 30 chr5 145265182 145265349 -7271910 - L1MC4a LINE L1 -2003 5879 5712 8 1693 303 261 98 35 chr5 145265501 145265644 -7271615 - L1MC4a LINE L1 -2416 5466 5315 8 1693 278 279 49 25 chr5 145265679 145265760 -7271499 - ID4_ SINE ID 0 83 1 8 1693 1655 63 0 0 chr5 145265767 145266044 -7271215 + ZP3AR Satellite Satellite 1 277 0 8 1693 331 254 0 0 chr5 145266001 145266064 -7271195 + ID4_ SINE ID 1 63 -20 8 1693 891 236 11 6 chr5 145266679 145266854 -7270405 + B3A SINE B2 3 178 -20 8 1693 315 0 0 0 chr5 145266869 145266904 -7270355 + (CA)n Simple_repeat Simple_repeat 2 36 0 8 1693 31 26 0 0 chr5 145266904 145266942 -7270317 + AT_rich Low_complexity Low_complexity 1 38 0 8 1693 273 255 115 21 chr5 145266960 145267056 -7270203 - Tigger7 DNA MER2_type -11 2480 2376 8 1693 613 311 99 87 chr5 145267063 145267397 -7269862 + ORR1E LTR MaLR 26 363 -7 8 1693 212 233 23 0 chr5 145267409 145267452 -7269807 + polypyrimidine Low_complexity Low_complexity 1 44 0 8 1693 516 260 141 35 chr5 145267779 145268006 -7269253 - B4A SINE B4 -30 262 12 8 1693 466 167 0 0 chr5 145268657 145268735 -7268524 + B4 SINE B4 1 78 -214 8 1693 789 191 30 36 chr5 145268742 145268927 -7268332 + B3A SINE B2 1 195 0 8 1693 189 245 0 0 chr5 145268984 145269033 -7268226 + C-rich Low_complexity Low_complexity 3 51 0 8 1693 474 263 64 28 chr5 145269039 145269180 -7268079 + B4 SINE B4 126 271 -21 8 1693 483 230 38 37 chr5 145269465 145269626 -7267633 + B4A SINE B4 1 229 -63 8 1693 794 251 0 35 chr5 145269626 145269795 -7267464 + RSINE1 SINE B4 3 165 0 8 1693 369 0 0 0 chr5 145269812 145269853 -7267406 + (TAA)n Simple_repeat Simple_repeat 2 42 0 8 1693 298 265 15 0 chr5 145269854 145269922 -7267337 + B4A SINE B4 210 278 -14 8 1693 263 261 20 102 chr5 145270807 145270905 -7266354 + B4A SINE B4 3 92 -200 8 1693 310 380 0 32 chr5 145270917 145271042 -7266217 + RSINE1 SINE B4 44 164 -1 8 1693 303 253 359 13 chr5 145271058 145271224 -7266035 + B4A SINE B4 72 285 -7 8 1693 423 106 0 0 chr5 145271334 145271400 -7265859 + (CA)n Simple_repeat Simple_repeat 1 66 0 8 1693 306 211 0 0 chr5 145271473 145271587 -7265672 + C-rich Low_complexity Low_complexity 1 114 0 8 1693 237 237 105 21 chr5 145272012 145272107 -7265152 - RMER15 LTR ERVL -92 483 381 8 1693 553 167 0 0 chr5 145272207 145272303 -7264956 - URR1B DNA MER1_type 0 225 130 8 1693 1218 14 0 0 chr5 145272303 145272447 -7264812 - L1Md_A LINE L1 0 6582 6439 8 1693 6897 19 0 0 chr5 145272447 145273254 -7264005 + L1Md_A LINE L1 5630 6436 -146 8 1693 354 145 0 31 chr5 145273254 145273318 -7263941 - URR1B DNA MER1_type -84 141 80 8 1693 657 184 18 18 chr5 145273575 145273808 -7263451 + (TATG)n Simple_repeat Simple_repeat 1 233 0 8 1693 296 225 27 27 chr5 145274215 145274288 -7262971 + ID SINE ID 10 82 -142 8 1693 647 108 0 10 chr5 145274288 145274391 -7262868 + (GGA)n Simple_repeat Simple_repeat 2 103 0 8 1693 524 231 99 0 chr5 145274409 145274580 -7262679 + B4 SINE B4 1 290 -2 8 1693 207 173 0 0 chr5 145274585 145274637 -7262622 + (CA)n Simple_repeat Simple_repeat 2 53 0 8 1693 528 303 0 8 chr5 145275091 145275214 -7262045 + RSINE1 SINE B4 29 150 -15 8 1693 186 43 0 0 chr5 145275237 145275260 -7261999 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1693 714 204 7 0 chr5 145275354 145275491 -7261768 + B3 SINE B2 4 141 -75 8 1693 546 91 0 0 chr5 145275491 145275568 -7261691 + (TCCC)n Simple_repeat Simple_repeat 1 77 0 8 1693 880 244 0 5 chr5 145275739 145275933 -7261326 - B3A SINE B2 -4 194 2 8 1693 388 223 234 69 chr5 145276157 145276345 -7260914 - ORR1E LTR MaLR -4 355 137 8 1693 7414 57 1 1 chr5 145276363 145277354 -7259905 - Lx LINE L1 -825 5829 4838 8 1693 6738 42 5 1 chr5 145277354 145278163 -7259096 + L1Md_F2 LINE L1 5770 6581 -1 8 1693 613 292 7 0 chr5 145278270 145278417 -7258842 + RSINE1 SINE B4 3 150 -15 8 1693 210 288 132 40 chr5 145278455 145278531 -7258728 + RSINE1 SINE B4 79 161 -4 8 1693 261 0 0 0 chr5 145278571 145278600 -7258659 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 8 1693 481 259 8 51 chr5 145278601 145278719 -7258540 - ORR1E LTR MaLR -235 124 12 8 1693 351 266 0 0 chr5 145279028 145279107 -7258152 - HERV16-int LTR ERVL -4558 438 360 8 1693 383 312 7 7 chr5 145279228 145279370 -7257889 + L1MA6 LINE L1 6013 6154 -146 8 1693 1199 233 28 28 chr5 145279381 145279668 -7257591 + B4 SINE B4 1 287 -5 8 1693 180 0 0 0 chr5 145279721 145279741 -7257518 + (CG)n Simple_repeat Simple_repeat 2 21 0 8 1693 369 0 0 0 chr5 145279741 145279781 -7257478 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1693 325 261 0 0 chr5 145279962 145280027 -7257232 - ID SINE ID -159 65 1 8 1693 739 241 44 42 chr5 145280193 145280421 -7256838 - RSINE1 SINE B4 -17 275 18 8 1693 692 142 0 0 chr5 145280564 145280670 -7256589 + RLTR20D LTR ERVK 3 108 -460 8 1693 922 133 24 45 chr5 145280658 145280843 -7256416 - RLTR20D LTR ERVK -239 289 89 8 1693 1305 83 0 0 chr5 145281304 145281484 -7255775 + (TCC)n Simple_repeat Simple_repeat 1 180 0 8 1693 262 277 35 35 chr5 145281530 145281616 -7255643 + L2 LINE L2 2796 2881 -538 8 1693 281 278 72 43 chr5 145281633 145281772 -7255487 + YREP_Mm Unknown Unknown 148 290 -1522 8 1693 1004 191 53 10 chr5 145281661 145281854 -7255405 - ID_B1 SINE B4 -4 220 15 8 1693 333 0 0 0 chr5 145281859 145281896 -7255363 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 8 1693 249 83 0 0 chr5 145281923 145281959 -7255300 + (TA)n Simple_repeat Simple_repeat 2 37 0 8 1693 338 304 11 21 chr5 145281965 145282059 -7255200 - PB1D10 SINE Alu -14 103 11 8 1693 841 270 67 32 chr5 145282109 145282470 -7254789 + ID_B1 SINE B4 1 290 -2 8 1693 233 267 33 0 chr5 145282503 145282563 -7254696 + MLT1A1 LTR MaLR 95 156 -252 8 1693 356 325 47 23 chr5 145282725 145282854 -7254405 + MLT1A1 LTR MaLR 272 403 -5 8 1693 656 267 25 35 chr5 145283264 145283462 -7253797 - B3A SINE B2 0 198 3 8 1693 492 18 0 0 chr5 145283596 145283653 -7253606 + (TG)n Simple_repeat Simple_repeat 1 57 0 8 1693 546 222 25 33 chr5 145283667 145283788 -7253471 - B3A SINE B2 -76 122 3 8 1693 525 32 0 0 chr5 145283838 145283901 -7253358 + (TC)n Simple_repeat Simple_repeat 2 64 0 8 1693 219 36 0 0 chr5 145284474 145284502 -7252757 + (TG)n Simple_repeat Simple_repeat 2 29 0 9 1693 871 238 17 0 chr5 145284514 145284686 -7252573 - B3A SINE B2 -23 175 1 9 1693 828 148 7 47 chr5 145285031 145285180 -7252079 - B1_Mur1 SINE Alu -5 144 2 9 1693 414 0 0 0 chr5 145285240 145285286 -7251973 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 1693 333 0 0 0 chr5 145285286 145285322 -7251937 + (CA)n Simple_repeat Simple_repeat 1 37 0 9 1693 1293 217 33 15 chr5 145285322 145285593 -7251666 - B4 SINE B4 -7 285 10 9 1693 337 270 14 7 chr5 145285994 145286132 -7251127 + GA-rich Low_complexity Low_complexity 4 142 0 9 1693 405 0 0 0 chr5 145286154 145286199 -7251060 + (TG)n Simple_repeat Simple_repeat 2 46 0 9 1693 403 207 267 6 chr5 145286213 145286386 -7250873 - B4A SINE B4 -74 218 1 9 1693 231 229 111 96 chr5 145286968 145287103 -7250156 + B1F SINE Alu 13 149 0 9 1693 525 267 24 166 chr5 145286985 145287108 -7250151 + B4 SINE B4 108 228 -64 9 1693 517 269 54 14 chr5 145287108 145287255 -7250004 + RSINE1 SINE B4 4 156 -9 9 1693 369 62 0 0 chr5 145287257 145287305 -7249954 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 9 1693 525 267 24 166 chr5 145287305 145287389 -7249870 + B4 SINE B4 229 288 -4 9 1693 460 265 50 56 chr5 145287778 145287938 -7249321 + B4A SINE B4 1 159 -133 9 1693 423 278 31 31 chr5 145288235 145288365 -7248894 - ID_B1 SINE B4 -1 223 94 9 1693 761 255 137 23 chr5 145288426 145288976 -7248283 - L1MB4 LINE L1 -213 6140 5478 9 1693 22 0 0 0 chr5 145288976 145288998 -7248261 + AT_rich Low_complexity Low_complexity 1 22 0 9 1693 678 282 13 0 chr5 145289010 145289159 -7248100 - RSINE1 SINE B4 0 165 15 9 1693 24 0 0 0 chr5 145289340 145289364 -7247895 + AT_rich Low_complexity Low_complexity 1 24 0 9 1693 278 196 136 10 chr5 145289413 145289516 -7247743 - L1MB4 LINE L1 -1053 5266 5151 9 1693 290 246 46 0 chr5 145289518 145289583 -7247676 - MTEa LTR MaLR -2 377 310 9 1693 622 271 42 0 chr5 145289569 145289713 -7247546 + B3A SINE B2 7 156 -42 9 1693 381 75 0 0 chr5 145289715 145289768 -7247491 + (CA)n Simple_repeat Simple_repeat 1 53 0 9 1693 839 211 70 36 chr5 145289800 145290053 -7247206 - MTEa LTR MaLR -34 345 3 9 1693 377 305 23 8 chr5 145290086 145290099 -7247160 - B3A SINE B2 -6 192 180 9 1693 420 71 0 0 chr5 145290099 145290155 -7247104 + (TG)n Simple_repeat Simple_repeat 1 56 0 9 1693 377 305 23 8 chr5 145290155 145290273 -7246986 - B3A SINE B2 -19 179 60 9 1693 311 259 40 15 chr5 145290404 145290544 -7246715 - L1MB4 LINE L1 -1336 4983 4841 9 1693 737 252 0 7 chr5 145290563 145290711 -7246548 + B1F2 SINE Alu 3 149 0 9 1693 525 293 79 22 chr5 145290714 145290793 -7246466 + B4 SINE B4 8 96 -196 9 1693 224 367 53 35 chr5 145290793 145290906 -7246353 + B1_Mur3 SINE Alu 4 118 -31 9 1693 284 238 13 13 chr5 145290930 145291079 -7246180 + (CATG)n Simple_repeat Simple_repeat 4 152 0 9 1693 186 189 0 0 chr5 145291098 145291135 -7246124 + (CATG)n Simple_repeat Simple_repeat 4 40 0 9 1693 240 293 37 0 chr5 145291222 145291304 -7245955 - L1MB4 LINE L1 -1544 4775 4691 9 1693 554 274 41 31 chr5 145291359 145291555 -7245704 + B3A SINE B2 1 198 0 9 1693 239 279 186 46 chr5 145291835 145291897 -7245362 - L1MB4 LINE L1 -4547 1853 1791 9 1693 852 164 7 27 chr5 145291897 145292047 -7245212 - B1_Mur2 SINE Alu -1 148 2 9 1693 239 279 186 46 chr5 145292047 145292356 -7244903 - L1MB4 LINE L1 -4610 1790 1431 9 1693 657 277 11 43 chr5 145292358 145292543 -7244716 + B4A SINE B4 3 181 -111 9 1693 459 0 0 0 chr5 145292623 145292674 -7244585 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1693 251 337 206 0 chr5 145292729 145292821 -7244438 + B1F1 SINE Alu 1 111 -38 9 1693 390 270 0 0 chr5 145292749 145292823 -7244436 + ID_B1 SINE B4 118 191 -33 9 1693 693 126 0 0 chr5 145293696 145293807 -7243452 + (TG)n Simple_repeat Simple_repeat 1 111 0 9 1693 258 343 68 10 chr5 145293973 145294076 -7243183 + RMER12 LTR ERVK 743 851 -471 9 1693 794 240 16 27 chr5 145294109 145294297 -7242962 - B3A SINE B2 -2 196 11 9 1693 982 80 12 0 chr5 145294334 145294497 -7242762 + (TG)n Simple_repeat Simple_repeat 2 166 0 9 1693 790 291 71 12 chr5 145294500 145294754 -7242505 - B4A SINE B4 -18 274 6 9 1693 511 246 38 15 chr5 145294765 145294897 -7242362 - B1F SINE Alu -8 141 7 9 1693 490 327 31 6 chr5 145295072 145295232 -7242027 + RSINE1 SINE B4 1 164 -1 9 1693 201 188 42 0 chr5 145295238 145295286 -7241973 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1693 837 247 66 0 chr5 145295321 145295503 -7241756 + B3A SINE B2 4 197 -1 9 1693 2155 139 87 5 chr5 145295563 145295952 -7241307 + MTC LTR MaLR 1 421 0 9 1693 387 0 0 0 chr5 145297398 145297441 -7239818 + (CA)n Simple_repeat Simple_repeat 1 43 0 9 1693 764 164 12 8 chr5 145297469 145297607 -7239652 - MTD LTR MaLR -14 405 269 9 1693 228 35 0 0 chr5 145297696 145297725 -7239534 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 9 1693 761 150 52 22 chr5 145297760 145297896 -7239363 - B1_Mur4 SINE Alu 0 150 11 9 1693 443 326 76 33 chr5 145297927 145298111 -7239148 - MTD LTR MaLR -218 201 10 9 1693 819 256 63 16 chr5 145298226 145298480 -7238779 + Lx8 LINE L1 7206 7471 -2 9 1693 22 0 0 0 chr5 145298480 145298502 -7238757 + AT_rich Low_complexity Low_complexity 1 22 0 9 1693 21 0 0 0 chr5 145298566 145298587 -7238672 + AT_rich Low_complexity Low_complexity 1 21 0 9 1693 409 281 53 145 chr5 145299261 145299523 -7237736 - ORR1E LTR MaLR -121 238 1 9 1693 652 278 16 22 chr5 145299916 145300100 -7237159 - B3A SINE B2 -15 183 1 9 1693 2368 127 11 8 chr5 145300779 145301137 -7236122 + ORR1B2 LTR MaLR 1 359 -8 9 1693 213 273 0 0 chr5 145301152 145301196 -7236063 + polypurine Low_complexity Low_complexity 3 46 0 9 1693 336 94 0 0 chr5 145301274 145301327 -7235932 + (TG)n Simple_repeat Simple_repeat 1 53 0 9 1693 734 246 7 0 chr5 145301327 145301465 -7235794 - RSINE1 SINE B4 -25 140 2 9 1693 1062 168 53 24 chr5 145301794 145302001 -7235258 + B3 SINE B2 4 216 0 9 1693 303 28 0 0 chr5 145302102 145302138 -7235121 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1693 254 288 68 0 chr5 145302140 145302199 -7235060 - B4 SINE B4 -11 281 219 9 1693 231 260 79 40 chr5 145302471 145302547 -7234712 - ID4 SINE ID 0 83 5 9 1693 276 30 0 0 chr5 145303036 145303069 -7234190 + (GA)n Simple_repeat Simple_repeat 2 34 0 9 1693 363 303 164 28 chr5 145303269 145303483 -7233776 - MIRb SINE MIR -6 262 20 9 1693 396 0 0 0 chr5 145303611 145303655 -7233604 + (CA)n Simple_repeat Simple_repeat 2 45 0 9 1693 280 276 118 40 chr5 145304457 145304618 -7232641 - MIR3 SINE MIR -23 185 11 9 1693 180 0 0 0 chr5 145305152 145305172 -7232087 + (TG)n Simple_repeat Simple_repeat 1 20 0 9 1693 360 43 0 0 chr5 145306169 145306215 -7231044 + (TTTC)n Simple_repeat Simple_repeat 3 48 0 9 1693 180 0 0 0 chr5 145307944 145307964 -7229295 + (T)n Simple_repeat Simple_repeat 1 20 0 9 1693 27 0 0 0 chr5 145308836 145308863 -7228396 + GC_rich Low_complexity Low_complexity 1 27 0 9 1693 23 0 0 0 chr5 145309215 145309238 -7228021 + GC_rich Low_complexity Low_complexity 1 23 0 9 1693 553 217 8 57 chr5 145309908 145310030 -7227229 - PB1D10 SINE Alu -1 116 1 9 1693 733 230 33 75 chr5 145310793 145311005 -7226254 - B3 SINE B2 -13 203 1 9 1693 192 258 78 31 chr5 145312047 145312111 -7225148 + MIRb SINE MIR 63 129 -139 9 1693 348 178 52 88 chr5 145313377 145313480 -7223779 + PB1D10 SINE Alu 24 127 -20 9 1693 752 255 92 0 chr5 145313505 145313701 -7223558 - B3 SINE B2 -1 215 2 9 1693 360 223 223 0 chr5 145313737 145313858 -7223401 + B1_Mur2 SINE Alu 2 149 0 9 1693 186 43 0 0 chr5 145313858 145313881 -7223378 + (GAAAA)n Simple_repeat Simple_repeat 4 26 0 9 1693 299 230 121 92 chr5 145314898 145315137 -7222122 - L1ME1 LINE L1 -2 6177 5932 9 1693 207 69 0 0 chr5 145315772 145315801 -7221458 + (CA)n Simple_repeat Simple_repeat 2 30 0 9 1693 225 0 0 0 chr5 145316696 145316721 -7220538 + (G)n Simple_repeat Simple_repeat 1 25 0 9 1693 25 0 0 0 chr5 145318192 145318217 -7219042 + AT_rich Low_complexity Low_complexity 1 25 0 9 1693 234 0 0 0 chr5 145318412 145318438 -7218821 + (CA)n Simple_repeat Simple_repeat 1 26 0 9 1693 198 103 0 0 chr5 145318785 145318814 -7218445 + (TG)n Simple_repeat Simple_repeat 2 30 0 9 1693 249 180 0 0 chr5 145318877 145318927 -7218332 + (TG)n Simple_repeat Simple_repeat 1 50 0 9 1693 426 108 0 0 chr5 145318965 145319030 -7218229 + (TG)n Simple_repeat Simple_repeat 2 66 0 9 1693 257 283 0 0 chr5 145319169 145319229 -7218030 - B4A SINE B4 -232 60 1 9 1693 268 273 96 47 chr5 145319229 145319370 -7217889 - B4 SINE B4 -65 227 2 9 1693 929 239 50 82 chr5 145319988 145320270 -7216989 + B4A SINE B4 7 279 -13 9 1693 237 65 0 0 chr5 145320484 145320515 -7216744 + (CCCCG)n Simple_repeat Simple_repeat 4 34 0 9 1693 516 257 190 46 chr5 145320580 145320796 -7216463 + B4A SINE B4 3 249 -43 9 1693 606 204 9 0 chr5 145320658 145320766 -7216493 + PB1D9 SINE Alu 7 115 -5 9 1693 285 278 6 189 chr5 145320766 145320814 -7216445 + MT2B LTR ERVL 179 295 -306 9 1693 233 276 162 0 chr5 145320890 145320995 -7216264 + Lx8 LINE L1 6974 7095 -378 9 1693 1431 150 135 56 chr5 145320996 145321336 -7215923 - ORR1D1 LTR MaLR -5 369 3 9 1693 27 0 0 0 chr5 145321523 145321550 -7215709 + AT_rich Low_complexity Low_complexity 1 27 0 9 1693 264 100 0 0 chr5 145322032 145322072 -7215187 + (TG)n Simple_repeat Simple_repeat 1 40 0 9 1693 366 287 202 16 chr5 145322075 145322199 -7215060 - RSINE1 SINE B4 -15 150 4 9 1693 288 0 0 0 chr5 145322279 145322311 -7214948 + (TC)n Simple_repeat Simple_repeat 2 33 0 9 1693 448 308 121 5 chr5 145322555 145322754 -7214505 - RMER20B LTR ERVK -280 347 126 9 1693 3467 247 25 26 chr5 145322913 145323819 -7213440 - MERVK26-int LTR ERVK -38 6881 5977 9 1693 186 26 105 0 chr5 145324134 145324172 -7213087 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 9 1693 1849 70 8 0 chr5 145324251 145324492 -7212767 + ORR1A2 LTR MaLR 85 327 0 9 1693 355 198 93 0 chr5 145324492 145324578 -7212681 - B4A SINE B4 -196 96 3 1 1693 545 150 10 0 chr5 145324610 145324710 -7212549 + CT-rich Low_complexity Low_complexity 2 102 0 1 1693 218 105 26 0 chr5 145324930 145324968 -7212291 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1693 609 240 170 85 chr5 145325029 145325252 -7212007 + B4 SINE B4 39 280 -12 1 1693 519 107 0 0 chr5 145325257 145325341 -7211918 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1693 575 267 38 73 chr5 145325396 145325431 -7211828 + L1M4c LINE L1 1477 1509 -4875 1 1693 5004 91 21 50 chr5 145325431 145326205 -7211054 - RMER17A LTR ERVK 0 751 1 1 1693 575 267 38 73 chr5 145326205 145326456 -7210803 + L1M4c LINE L1 1510 1753 -4631 1 1693 344 281 62 0 chr5 145326464 145326560 -7210699 + B1F SINE Alu 3 104 -45 1 1693 459 174 0 25 chr5 145326584 145326702 -7210557 + GA-rich Low_complexity Low_complexity 1 115 0 1 1693 268 302 74 49 chr5 145326752 145326996 -7210263 + L1M4c LINE L1 1923 2172 -4212 1 1693 288 241 30 170 chr5 145326998 145327133 -7210126 + MT2B LTR ERVL 143 258 -343 1 1693 759 131 32 8 chr5 145327050 145327173 -7210086 + B1_Mur2 SINE Alu 23 148 -1 1 1693 203 125 42 0 chr5 145327205 145327253 -7210006 + GA-rich Low_complexity Low_complexity 3 52 0 1 1693 298 259 70 2 chr5 145327253 145327334 -7209925 + B3 SINE B2 3 87 -111 1 1693 273 297 111 49 chr5 145327382 145327626 -7209633 - LTR52-int LTR ERVL -3067 489 231 1 1693 258 214 0 0 chr5 145327626 145327668 -7209591 + B3A SINE B2 4 45 -153 1 1693 1174 65 0 0 chr5 145327703 145327841 -7209418 - B1_Mus1 SINE Alu -9 139 2 1 1693 714 253 20 67 chr5 145327841 145327978 -7209281 + B3 SINE B2 30 161 -55 1 1693 360 0 0 0 chr5 145327978 145328018 -7209241 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1693 579 15 0 0 chr5 145328018 145328085 -7209174 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1693 714 253 20 67 chr5 145328085 145328141 -7209118 + B3 SINE B2 162 214 -2 1 1693 396 0 0 0 chr5 145328149 145328193 -7209066 + (TC)n Simple_repeat Simple_repeat 1 44 0 1 1693 284 44 44 0 chr5 145328527 145328572 -7208687 + (TCTG)n Simple_repeat Simple_repeat 4 50 0 1 1693 1367 230 13 66 chr5 145328587 145328890 -7208369 - B4A SINE B4 0 292 6 1 1693 192 40 0 0 chr5 145328903 145328928 -7208331 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1 1693 481 246 33 0 chr5 145328935 145329057 -7208202 - B1F SINE Alu -17 132 7 1 1693 510 226 180 146 chr5 145329622 145329771 -7207488 + B4A SINE B4 52 222 -70 1 1693 722 220 87 11 chr5 145329771 145329955 -7207304 + B3A SINE B2 1 198 0 1 1693 510 226 180 146 chr5 145329955 145330038 -7207221 + B4A SINE B4 223 292 0 1 1693 727 188 23 0 chr5 145330061 145330142 -7207117 + (CATA)n Simple_repeat Simple_repeat 1 85 0 1 1693 2259 111 35 0 chr5 145330142 145330458 -7206801 + ORR1A2 LTR MaLR 1 327 0 1 1693 727 188 23 0 chr5 145330458 145330552 -7206707 + (CATA)n Simple_repeat Simple_repeat 2 95 0 1 1693 778 182 11 11 chr5 145330514 145330692 -7206567 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 1 1693 528 225 234 11 chr5 145330742 145330926 -7206333 - B4A SINE B4 -65 227 3 1 1693 459 107 0 0 chr5 145331808 145331892 -7205367 + (TG)n Simple_repeat Simple_repeat 2 85 0 1 1693 591 244 118 0 chr5 145331894 145332013 -7205246 - B4 SINE B4 -78 214 82 1 1693 345 98 330 9 chr5 145332018 145332130 -7205129 - B2_Mm2 SINE B2 -1 194 47 1 1693 1376 42 0 6 chr5 145332147 145332315 -7204944 - B2_Mm1t SINE B2 -26 167 1 1 1693 473 260 10 0 chr5 145332315 145332409 -7204850 - B4A SINE B4 -197 95 1 1 1693 184 294 67 45 chr5 145332498 145332587 -7204672 - MIR SINE MIR -68 194 104 1 1693 811 224 13 0 chr5 145332592 145332744 -7204515 + RSINE1 SINE B4 2 155 -10 1 1693 184 122 24 24 chr5 145333039 145333081 -7204178 + CT-rich Low_complexity Low_complexity 2 43 0 1 1693 870 251 20 81 chr5 145333477 145333511 -7203748 - MTE2b LTR MaLR -2 377 346 1 1693 435 52 0 0 chr5 145333511 145333569 -7203690 + (CA)n Simple_repeat Simple_repeat 2 59 0 1 1693 870 251 20 81 chr5 145333569 145333781 -7203478 - MTE2b LTR MaLR -34 345 146 1 1693 309 267 13 26 chr5 145333812 145333889 -7203370 - RMER5 LTR ERV1 -388 146 71 1 1693 1027 264 8 47 chr5 145333938 145334192 -7203067 + MTE2a LTR MaLR 134 377 -2 1 1693 671 272 170 44 chr5 145334343 145334708 -7202551 + MLT1C LTR MaLR 42 452 -15 1 1693 344 172 47 0 chr5 145334869 145334933 -7202326 + B4 SINE B4 1 67 -225 1 1693 478 260 29 9 chr5 145335135 145335240 -7202019 + B1F1 SINE Alu 33 139 -10 1 1693 489 34 0 0 chr5 145335270 145335329 -7201930 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 1 1693 329 336 25 17 chr5 145335330 145335448 -7201811 - LTR16B2 LTR ERVL -341 121 3 1 1693 2353 122 81 5 chr5 145335591 145335962 -7201297 - MTC LTR MaLR -18 403 5 1 1693 869 71 8 16 chr5 145336102 145336245 -7201014 - B1_Mus1 SINE Alu -11 138 1 1 1693 687 84 10 10 chr5 145336245 145336339 -7200920 - ORR1A4 LTR MaLR -55 274 181 1 1693 237 308 58 25 chr5 145336414 145336534 -7200725 - YREP_Mm Unknown Unknown -1494 318 195 1 1693 408 315 0 0 chr5 145336430 145336541 -7200718 + ID_B1 SINE B4 99 209 -15 1 1693 4410 150 83 68 chr5 145336591 145337479 -7199780 - RMER19B LTR ERVK 0 902 1 1 1693 964 248 103 56 chr5 145337479 145337775 -7199484 - MTEa LTR MaLR -66 313 3 1 1693 267 222 141 47 chr5 145337795 145337851 -7199408 - PB1D7 SINE Alu 0 120 57 1 1693 852 212 88 5 chr5 145337851 145338035 -7199224 - MTD LTR MaLR 0 419 220 1 1693 2979 28 3 6 chr5 145338035 145338397 -7198862 + MTB LTR MaLR 1 361 -39 1 1693 2499 117 20 0 chr5 145338397 145338749 -7198510 - RLTR10D LTR ERVK 0 359 1 1 1693 11391 72 25 52 chr5 145338749 145340454 -7196805 - IAP-d-int LTR ERVK 0 6542 4885 1 1693 35774 51 22 11 chr5 145340455 145342660 -7194599 - IAP-d-int LTR ERVK -1873 4669 2418 1 1693 183 156 64 43 chr5 145342660 145342707 -7194552 + L2 LINE L2 2695 2742 -677 1 1693 35774 51 22 11 chr5 145342707 145345071 -7192188 - IAP-d-int LTR ERVK -1873 2417 1 1 1693 2538 99 17 22 chr5 145345071 145345432 -7191827 - RLTR10D LTR ERVK 0 359 1 1 1693 410 0 0 0 chr5 145345432 145345478 -7191781 + MTB_Mm LTR MaLR 362 407 0 1 1693 993 242 18 9 chr5 145345478 145345699 -7191560 - MTD LTR MaLR -196 223 1 1 1693 647 235 157 0 chr5 145345699 145345851 -7191408 - ID_B1 SINE B4 -48 176 1 1 1693 655 309 85 6 chr5 145346040 145346369 -7190890 - L2 LINE L2 -592 2827 2473 1 1693 967 225 67 20 chr5 145346642 145346883 -7190376 - MTD LTR MaLR -156 265 16 1 1693 630 242 0 24 chr5 145346882 145347005 -7190254 + RSINE1 SINE B4 30 149 -16 1 1693 180 0 0 0 chr5 145347007 145347027 -7190232 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1693 970 232 19 10 chr5 145347697 145347906 -7189353 + B3 SINE B2 1 211 -5 1 1693 443 178 0 14 chr5 145348234 145348308 -7188951 + B4 SINE B4 6 78 -214 1 1693 485 338 39 0 chr5 145348324 145348478 -7188781 + RSINE1 SINE B4 1 160 -5 1 1693 711 317 60 10 chr5 145348540 145348741 -7188518 + B4A SINE B4 82 292 0 1 1693 1876 132 93 26 chr5 145349201 145349544 -7187715 + RLTR24 LTR ERV1 1 366 -163 1 1693 1850 150 22 28 chr5 145349554 145349863 -7187396 + ORR1B1 LTR MaLR 41 347 -47 1 1693 271 171 0 0 chr5 145349863 145349904 -7187355 + B1_Mur4 SINE Alu 2 42 -108 1 1693 1134 90 7 0 chr5 145349904 145350049 -7187210 + B1_Mm SINE Alu 2 147 0 1 1693 396 74 19 0 chr5 145350069 145350123 -7187136 + ORR1A3 LTR MaLR 272 326 0 1 1693 782 125 186 7 chr5 145350123 145350262 -7186997 + RLTR24 LTR ERV1 365 529 0 1 1693 2143 122 138 5 chr5 145350425 145350795 -7186464 - RLTR23 LTR ERV1 0 430 12 1 1693 974 251 187 21 chr5 145350800 145351089 -7186170 - ORR1D2 LTR MaLR -33 337 1 1 1693 213 146 0 0 chr5 145351125 145351173 -7186086 + (A)n Simple_repeat Simple_repeat 1 48 0 1 1693 245 155 53 86 chr5 145351176 145351268 -7185991 + MTE2b LTR MaLR 287 421 0 1 1693 714 288 103 77 chr5 145351365 145351715 -7185544 - ORR1E LTR MaLR 0 359 1 1 1693 429 263 71 0 chr5 145351784 145351883 -7185376 + MTE2b LTR MaLR 1 106 -273 1 1693 305 176 318 0 chr5 145351911 145351996 -7185263 + MTE2b LTR MaLR 238 349 -30 1 1693 459 217 0 12 chr5 145352635 145352719 -7184540 + B3A SINE B2 1 83 -115 1 1693 1155 104 4 0 chr5 145352739 145353000 -7184259 + (CA)n Simple_repeat Simple_repeat 1 261 0 1 1693 184 298 124 39 chr5 145353055 145353184 -7184075 + L2a LINE L2 3274 3413 -13 1 1693 25 0 0 0 chr5 145353238 145353263 -7183996 + AT_rich Low_complexity Low_complexity 1 25 0 1 1693 806 191 43 68 chr5 145353332 145353495 -7183764 + B4 SINE B4 134 292 0 1 1693 344 224 0 117 chr5 145353558 145353669 -7183590 - MLT1A1 LTR MaLR 0 408 311 1 1693 228 35 0 0 chr5 145353827 145353856 -7183403 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1 1693 1136 73 0 0 chr5 145353856 145353993 -7183266 - B1_Mus1 SINE Alu -10 138 2 1 1693 1049 283 39 35 chr5 145354287 145354573 -7182686 + B4 SINE B4 6 292 0 1 1693 960 181 56 17 chr5 145354636 145354816 -7182443 + B3A SINE B2 11 197 -1 1 1693 600 313 14 50 chr5 145354834 145355056 -7182203 + B4A SINE B4 1 214 -78 1 1693 471 261 0 9 chr5 145355213 145355325 -7181934 - PB1D10 SINE Alu -2 115 5 1 1693 403 179 32 0 chr5 145355418 145355513 -7181746 + GA-rich Low_complexity Low_complexity 4 101 0 1 1693 1707 183 44 24 chr5 145355871 145356201 -7181058 + MTEb LTR MaLR 1 338 -41 1 1693 387 0 0 0 chr5 145356201 145356244 -7181015 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1693 2077 136 25 22 chr5 145356278 145356650 -7180609 + ORR1B1 LTR MaLR 22 394 0 1 1693 456 67 0 0 chr5 145356650 145356710 -7180549 + (TG)n Simple_repeat Simple_repeat 2 61 0 1 1693 774 260 0 0 chr5 145356725 145356879 -7180380 - B3A SINE B2 -37 161 8 1 1693 285 232 58 0 chr5 145356863 145356932 -7180327 + MTEb LTR MaLR 307 379 0 1 1693 642 258 30 59 chr5 145356992 145357116 -7180143 + RSINE1 SINE B4 2 118 -47 1 1693 420 111 0 0 chr5 145357116 145357179 -7180080 + (CA)n Simple_repeat Simple_repeat 1 63 0 1 1693 642 258 30 59 chr5 145357179 145357223 -7180036 + RSINE1 SINE B4 119 165 0 1 1693 240 340 20 41 chr5 145357310 145357408 -7179851 - RMER15 LTR ERVL -117 458 363 1 1693 415 350 110 18 chr5 145357614 145357841 -7179418 - MLT1J LTR MaLR -145 367 120 1 1693 980 226 116 41 chr5 145357891 145358158 -7179101 + B4A SINE B4 3 289 -3 1 1693 275 285 370 36 chr5 145358244 145358382 -7178877 + MIR SINE MIR 85 268 0 1 211 308 236 256 11 chr5 145358779 145358869 -7178390 - PB1D10 SINE Alu 0 117 6 1 1694 450 0 0 0 chr5 145358870 145358920 -7178339 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1694 891 281 42 4 chr5 145359161 145359397 -7177862 - B4 SINE B4 -47 245 1 1 1694 438 275 37 19 chr5 145359469 145359625 -7177634 + MTEa LTR MaLR 207 377 -2 1 1694 1502 207 98 19 chr5 145359631 145359956 -7177303 + MTEa LTR MaLR 1 351 -28 1 1694 2309 69 6 59 chr5 145359958 145360295 -7176964 + ORR1A2 LTR MaLR 1 319 -8 1 1694 740 173 60 7 chr5 145360503 145360654 -7176605 - RMER15 LTR ERVL -1 574 416 1 1694 1680 169 28 62 chr5 145360678 145361032 -7176227 + RMER1B Other Other 696 1037 -29 1 1694 1567 144 68 97 chr5 145361032 145361216 -7176043 + ORR1C1 LTR MaLR 16 166 -212 1 1694 489 17 0 0 chr5 145361216 145361274 -7175985 + (TC)n Simple_repeat Simple_repeat 2 59 0 1 1694 1567 144 68 97 chr5 145361274 145361428 -7175831 + ORR1C1 LTR MaLR 167 343 -35 1 1694 298 284 45 0 chr5 145361521 145361609 -7175650 + MER89 LTR ERV1 437 528 -31 1 1694 583 148 9 47 chr5 145361810 145361916 -7175343 + MTD LTR MaLR 174 275 -144 1 1694 401 278 67 39 chr5 145362157 145362362 -7174897 - RLTR26 LTR ERVK -385 257 1 1 1694 429 185 29 4 chr5 145362366 145362447 -7174812 + MTD LTR MaLR 335 407 -12 1 1694 480 261 82 27 chr5 145362485 145362631 -7174628 + RMER15 LTR ERVL 276 429 -146 1 1694 591 221 0 9 chr5 145362682 145362787 -7174472 - B3A SINE B2 -93 105 2 1 1694 715 220 176 24 chr5 145362799 145363004 -7174255 + RMER15 LTR ERVL 340 575 0 1 1694 877 274 34 67 chr5 145363345 145363642 -7173617 + B4A SINE B4 1 287 -5 1 1694 35 24 0 0 chr5 145363682 145363724 -7173535 + AT_rich Low_complexity Low_complexity 1 42 0 1 1694 567 246 9 8 chr5 145363847 145364383 -7172876 + (TG)n Simple_repeat Simple_repeat 1 537 0 1 1694 597 259 150 43 chr5 145364396 145364650 -7172609 - B4 SINE B4 -11 281 1 1 1694 521 228 170 21 chr5 145365309 145365497 -7171762 + B3 SINE B2 1 216 0 1 1694 931 216 108 22 chr5 145365677 145365909 -7171350 + RMER15 LTR ERVL 324 575 0 1 1694 333 0 0 0 chr5 145365911 145365948 -7171311 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1694 573 15 0 0 chr5 145365948 145366013 -7171246 + (GA)n Simple_repeat Simple_repeat 1 66 0 1 1694 1175 233 0 151 chr5 145366035 145366379 -7170880 + MTEa LTR MaLR 3 294 -85 1 1694 266 250 68 51 chr5 145366743 145366861 -7170398 + L1M5 LINE L1 5698 5817 -347 1 1694 1152 97 68 0 chr5 145366878 145367054 -7170205 + ZP3AR Satellite Satellite 1 188 -24 1 1694 442 218 0 0 chr5 145367053 145367131 -7170128 - B1_Mur4 SINE Alu -71 79 2 1 1694 505 233 26 5 chr5 145367166 145367280 -7169979 - B3A SINE B2 -6 210 96 1 1694 371 258 99 6 chr5 145367329 145367459 -7169800 - PB1D10 SINE Alu 0 148 6 1 1694 912 241 75 47 chr5 145367533 145367811 -7169448 - B4 SINE B4 -5 287 2 1 1694 287 65 22 0 chr5 145367864 145367910 -7169349 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1694 447 248 45 9 chr5 145367910 145368020 -7169239 - RSINE1 SINE B4 -41 124 11 1 1694 212 244 0 0 chr5 145368589 145368630 -7168629 + G-rich Low_complexity Low_complexity 1 41 0 1 1694 270 265 60 87 chr5 145368714 145368863 -7168396 - MLT1K LTR MaLR -131 464 320 1 1694 1852 141 90 0 chr5 145369536 145369835 -7167424 + ORR1A3 LTR MaLR 1 326 0 1 1694 1565 32 5 16 chr5 145369877 145370065 -7167194 + B2_Mm1t SINE B2 1 186 -7 1 1694 899 148 0 22 chr5 145370224 145370362 -7166897 + B1_Mus1 SINE Alu 1 135 -13 1 1694 237 290 37 18 chr5 145370422 145370531 -7166728 - L1M5 LINE L1 -932 5512 5402 1 1694 851 269 117 16 chr5 145370621 145370878 -7166381 - B4 SINE B4 0 292 10 1 1694 512 319 14 0 chr5 145370927 145371071 -7166188 - RSINE1 SINE B4 -17 148 3 1 1694 189 121 0 0 chr5 145371103 145371136 -7166123 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1694 344 336 38 57 chr5 145371147 145371305 -7165954 + MLT1N2 LTR MaLR 113 267 -295 1 1694 573 275 0 14 chr5 145371635 145371779 -7165480 + RSINE1 SINE B4 3 144 -21 1 1694 595 194 0 0 chr5 145372298 145372396 -7164863 + PB1D10 SINE Alu 3 100 -17 1 1694 616 345 20 78 chr5 145372418 145372663 -7164596 + B4 SINE B4 51 281 -11 1 1694 189 0 0 0 chr5 145372702 145372723 -7164536 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1694 760 298 34 47 chr5 145373025 145373321 -7163938 - B4A SINE B4 0 292 1 1 1694 2108 230 46 29 chr5 145373383 145373960 -7163299 + RMER19C LTR ERVK 86 664 -238 1 1694 228 280 91 120 chr5 145373977 145374253 -7163006 + ORR1B2 LTR MaLR 19 286 -81 1 1694 2397 148 291 17 chr5 145374401 145374978 -7162281 + RMER19A LTR ERVK 1 735 -2 1 1694 253 264 28 0 chr5 145375022 145375094 -7162165 + (TG)n Simple_repeat Simple_repeat 1 74 0 1 1694 780 209 65 84 chr5 145375094 145375308 -7161951 - B4A SINE B4 0 292 83 1 1694 1046 230 14 5 chr5 145375348 145375562 -7161697 + B3 SINE B2 1 216 0 1 1694 236 214 0 97 chr5 145375589 145375703 -7161556 - Lx8 LINE L1 -3 7470 7368 1 1694 1429 256 60 14 chr5 145375788 145376205 -7161054 - Lx8 LINE L1 -360 7113 6678 1 1694 306 244 15 2 chr5 145376225 145376300 -7160959 - B4A SINE B4 -215 77 3 1 1694 821 193 0 0 chr5 145376326 145376466 -7160793 + B1_Mur1 SINE Alu 3 142 -7 1 1694 239 377 9 0 chr5 145376485 145376591 -7160668 + PB1D10 SINE Alu 2 108 -9 1 1694 24 0 0 0 chr5 145376710 145376734 -7160525 + AT_rich Low_complexity Low_complexity 1 24 0 1 1694 315 315 16 0 chr5 145376743 145376870 -7160389 - L1MB4 LINE L1 -1 6179 6051 1 1694 325 235 0 36 chr5 145376897 145376981 -7160278 + ID2 SINE ID 1 81 -2 1 1694 314 286 22 0 chr5 145376987 145377078 -7160181 + ID_B1 SINE B4 93 185 -39 1 1694 1269 126 16 0 chr5 145377078 145377269 -7159990 + B2_Mm2 SINE B2 2 195 0 1 1694 454 205 36 0 chr5 145377273 145377356 -7159903 - ORR1B2 LTR MaLR -58 320 235 1 1694 1233 163 65 81 chr5 145377455 145377715 -7159544 - ORR1B2 LTR MaLR -111 256 1 1 1694 601 258 23 0 chr5 145377720 145377848 -7159411 + B1F SINE Alu 18 148 -1 1 1694 512 121 11 0 chr5 145377912 145378003 -7159256 + (CA)n Simple_repeat Simple_repeat 1 92 0 1 1694 523 269 68 12 chr5 145378019 145378181 -7159078 - ID_B1 SINE B4 -29 195 25 1 1694 390 91 0 0 chr5 145378181 145378236 -7159023 + (CA)n Simple_repeat Simple_repeat 1 55 0 1 1694 1304 200 62 79 chr5 145378236 145378651 -7158608 - MT2A LTR ERVL -62 539 1 1 1694 413 299 60 45 chr5 145378649 145378782 -7158477 + ZP3AR Satellite Satellite 8 142 -70 1 1694 392 317 71 12 chr5 145378838 145379007 -7158252 - LTR48B LTR ERV1 -331 313 135 1 1694 1244 73 6 0 chr5 145379076 145379253 -7158006 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 1 1694 515 209 96 52 chr5 145379748 145379884 -7157375 - B1_Mur4 SINE Alu -8 142 1 1 1694 482 224 151 8 chr5 145379929 145380055 -7157204 + B1_Mur1 SINE Alu 1 144 -5 1 1694 885 153 0 38 chr5 145380055 145380413 -7156846 + GA-rich Low_complexity Low_complexity 1 344 0 1 1694 267 273 15 0 chr5 145380486 145380552 -7156707 - RSINE1 SINE B4 -95 70 4 1 1694 456 233 0 11 chr5 145380640 145380727 -7156532 + ID SINE ID 4 89 -135 1 1694 1112 223 157 74 chr5 145380760 145381123 -7156136 + MTD LTR MaLR 26 418 -1 1 1694 255 133 156 0 chr5 145381125 145381170 -7156089 + ID_B1 SINE B4 165 216 -8 1 1694 244 0 27 27 chr5 145381175 145381212 -7156047 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1 1694 4149 123 143 6 chr5 145381372 145382020 -7155239 - RMER19A LTR ERVK 0 737 1 1 1694 219 88 0 0 chr5 145382087 145382121 -7155138 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1694 422 284 140 11 chr5 145382175 145382353 -7154906 - ORR1E LTR MaLR -19 340 140 1 1694 604 274 35 35 chr5 145382355 145382552 -7154707 + B3A SINE B2 2 198 0 1 1694 333 233 108 32 chr5 145382554 145382647 -7154612 + PB1D9 SINE Alu 14 113 -7 1 1694 376 240 8 92 chr5 145382643 145382773 -7154486 - ORR1E LTR MaLR -256 118 1 1 1694 422 264 8 19 chr5 145383386 145383506 -7153753 + PB1D10 SINE Alu 1 117 0 1 1694 216 0 0 0 chr5 145383580 145383604 -7153655 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1694 465 19 0 0 chr5 145383604 145383657 -7153602 + (GA)n Simple_repeat Simple_repeat 1 54 0 1 1694 234 0 0 0 chr5 145383657 145383683 -7153576 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1694 356 283 144 38 chr5 145383713 145383845 -7153414 - RSINE1 SINE B4 -18 147 2 1 1694 733 220 66 38 chr5 145383926 145384139 -7153120 - ID_B1 SINE B4 -5 219 1 1 1694 642 280 82 39 chr5 145384900 145385108 -7152151 + ID_B1 SINE B4 2 218 -6 1 1694 1600 41 11 4 chr5 145385780 145386088 -7151171 - ZP3AR Satellite Satellite -152 310 1 1 1694 226 203 40 68 chr5 145386088 145386162 -7151097 - ID4 SINE ID -11 72 1 1 1694 1494 57 68 20 chr5 145386162 145386266 -7150993 - ZP3AR Satellite Satellite -94 109 1 1 1694 1968 244 58 41 chr5 145386413 145387098 -7150161 - Charlie2b DNA MER1_type -29 2753 2057 1 1694 1007 239 56 63 chr5 145387150 145387436 -7149823 - B4A SINE B4 -8 284 1 1 1694 271 264 0 0 chr5 145387477 145387530 -7149729 + B1F1 SINE Alu 1 53 -96 1 1694 597 240 15 30 chr5 145387511 145387644 -7149615 - MTE2a LTR MaLR -158 221 91 1 1694 294 261 14 14 chr5 145387726 145387796 -7149463 - ID SINE ID -153 71 2 1 1694 453 36 0 0 chr5 145387927 145387982 -7149277 + (TG)n Simple_repeat Simple_repeat 1 55 0 1 1694 225 302 0 0 chr5 145388565 145388628 -7148631 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1694 922 280 52 11 chr5 145388635 145388902 -7148357 - B4A SINE B4 -14 278 1 1 1694 904 277 16 0 chr5 145389568 145389756 -7147503 + ID_B1 SINE B4 1 191 -33 1 1694 235 214 0 0 chr5 145389766 145389808 -7147451 + polypurine Low_complexity Low_complexity 1 42 0 1 1694 442 290 31 84 chr5 145389875 145390068 -7147191 + B4A SINE B4 1 192 -32 1 1694 704 239 0 28 chr5 145390260 145390402 -7146857 - ID_B1 SINE B4 -3 221 84 1 1694 412 209 33 125 chr5 145390621 145390741 -7146518 + B4 SINE B4 1 109 -183 1 1694 1959 276 24 31 chr5 145391363 145392030 -7145229 - Lx8 LINE L1 -693 6780 6119 1 1694 760 244 18 17 chr5 145392073 145392340 -7144919 - Lx8 LINE L1 -1475 5998 5727 1 1694 569 298 107 91 chr5 145392543 145392861 -7144398 + MLT1F LTR MaLR 67 389 -159 1 1694 545 217 0 80 chr5 145392866 145392991 -7144268 + B3A SINE B2 83 197 -1 1 1694 272 255 37 9 chr5 145392991 145393098 -7144161 + L1M4c LINE L1 1900 2009 -4375 1 1694 1041 89 0 0 chr5 145393589 145393735 -7143524 + (GGAA)n Simple_repeat Simple_repeat 3 148 0 1 1694 1032 156 0 0 chr5 145394168 145394528 -7142731 + (TG)n Simple_repeat Simple_repeat 1 360 0 1 1694 348 188 127 82 chr5 145394536 145394646 -7142613 - B3 SINE B2 -53 163 49 1 1694 334 284 80 82 chr5 145395173 145395461 -7141798 - MTEb LTR MaLR -24 355 53 1 1694 375 202 0 56 chr5 145395619 145395708 -7141551 + MER44A DNA MER2_type 92 175 -164 1 1694 180 0 0 0 chr5 145395713 145395733 -7141526 + (TG)n Simple_repeat Simple_repeat 1 20 0 1 1694 398 219 14 0 chr5 145395777 145395850 -7141409 - B4A SINE B4 -2 290 217 1 1694 878 226 25 15 chr5 145395867 145396065 -7141194 - ORR1D1 LTR MaLR -4 370 171 1 1694 1175 127 8 0 chr5 145396534 145396718 -7140541 - ZP3AR Satellite Satellite -34 185 1 1 1694 284 105 0 34 chr5 145396728 145396787 -7140472 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1 1694 908 173 22 28 chr5 145396787 145396965 -7140294 - B2_Mm2 SINE B2 -18 177 1 1 1694 498 246 14 35 chr5 145396968 145397111 -7140148 - B1F SINE Alu 0 149 10 1 1694 207 88 0 0 chr5 145397891 145397925 -7139334 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1694 456 313 22 15 chr5 145398361 145398497 -7138762 + B1F1 SINE Alu 5 141 -8 1 1694 1674 40 8 0 chr5 145398513 145399392 -7137867 + ZP3AR Satellite Satellite 1 885 0 1 1694 253 258 21 63 chr5 145399359 145399454 -7137805 + BC1_Mm scRNA scRNA 7 97 -55 1 1694 414 146 0 0 chr5 145399827 145399923 -7137336 + (TAAAAA)n Simple_repeat Simple_repeat 3 98 0 1 1694 946 204 0 24 chr5 145399925 145400091 -7137168 + RSINE1 SINE B4 4 165 0 1 1694 259 272 24 36 chr5 145400208 145400292 -7136967 + ID4_ SINE ID 1 83 0 1 1694 607 236 77 42 chr5 145400294 145400462 -7136797 + B3 SINE B2 1 174 -42 1 1694 204 258 0 15 chr5 145400462 145400481 -7136778 + polypurine Low_complexity Low_complexity 1 19 0 1 1694 239 98 0 38 chr5 145400481 145400534 -7136725 + (CAGA)n Simple_repeat Simple_repeat 2 52 0 1 1694 204 258 0 15 chr5 145400534 145400581 -7136678 + GA-rich Low_complexity Low_complexity 20 65 0 1 1694 444 267 28 83 chr5 145400946 145400967 -7136292 - B2_Mm1a SINE B2 -23 170 150 1 1694 432 77 0 0 chr5 145400967 145401032 -7136227 + (TG)n Simple_repeat Simple_repeat 2 66 0 1 1694 848 225 7 1 chr5 145401032 145401190 -7136069 - B3A SINE B2 -41 157 1 1 1694 503 277 114 15 chr5 145401194 145401326 -7135933 - ID_B1 SINE B4 0 224 80 1 1694 312 27 0 0 chr5 145401366 145401403 -7135856 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1694 475 275 12 75 chr5 145401522 145401683 -7135576 - MLT1C LTR MaLR 0 467 317 1 1694 628 201 65 29 chr5 145401738 145401876 -7135383 - B3A SINE B2 -55 143 1 1 1694 798 250 93 50 chr5 145401972 145402250 -7135009 - B4 SINE B4 0 292 3 1 1694 460 317 15 15 chr5 145402253 145402400 -7134859 - PB1D10 SINE Alu 0 148 5 1 1694 274 292 161 32 chr5 145402393 145402517 -7134742 - MLT1C LTR MaLR -275 192 53 1 1694 770 247 0 36 chr5 145402658 145402826 -7134433 + B4 SINE B4 3 164 -128 1 1694 591 282 62 64 chr5 145403332 145403509 -7133750 - B4A SINE B4 0 292 85 1 1694 555 250 29 29 chr5 145403549 145403689 -7133570 - B4A SINE B4 -152 140 1 1 1694 767 216 125 54 chr5 145404330 145404642 -7132617 + B4A SINE B4 1 292 0 1 1694 487 239 92 0 chr5 145404555 145404664 -7132595 + B3A SINE B2 80 198 0 1 1694 303 303 0 33 chr5 145404662 145404754 -7132505 + B4A SINE B4 204 292 0 1 1694 189 107 0 0 chr5 145404776 145404804 -7132455 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1694 208 387 28 50 chr5 145404891 145405073 -7132186 - MIRm SINE MIR -97 179 2 1 1694 1085 153 12 6 chr5 145405231 145405402 -7131857 + ZP3AR Satellite Satellite 30 201 -11 1 1694 257 272 11 80 chr5 145405402 145405490 -7131769 + ID4 SINE ID 1 82 -1 1 1694 384 232 49 0 chr5 145405491 145405573 -7131686 - MLT1C LTR MaLR -302 88 3 1 1694 372 283 9 54 chr5 145406677 145406789 -7130470 + PB1D10 SINE Alu 9 115 -2 1 1694 263 175 0 0 chr5 145406835 145406875 -7130384 + ZP3AR Satellite Satellite 44 83 -129 1 1694 211 196 77 19 chr5 145406875 145406887 -7130372 + ID SINE ID 2 56 -168 1 1694 756 187 101 0 chr5 145407231 145407370 -7129889 + B3A SINE B2 1 153 -45 1 1694 404 111 14 0 chr5 145407373 145407445 -7129814 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1694 790 211 20 0 chr5 145407461 145407608 -7129651 - B1_Mur4 SINE Alu 0 150 1 1 1694 685 190 6 6 chr5 145407611 145407786 -7129473 + CT-rich Low_complexity Low_complexity 2 176 0 1 1694 585 300 193 11 chr5 145407909 145408256 -7129003 - L2 LINE L2 -978 2441 2032 1 1694 666 188 0 25 chr5 145408423 145408543 -7128716 - PB1D10 SINE Alu 0 117 1 1 1694 243 79 0 0 chr5 145408554 145408592 -7128667 + (T)n Simple_repeat Simple_repeat 1 38 0 1 1694 460 234 21 0 chr5 145409081 145409162 -7128097 - ID_B1 SINE B4 -8 216 134 1 1694 442 216 9 38 chr5 145409162 145409265 -7127994 - MTD LTR MaLR 0 419 320 1 1694 2825 148 32 101 chr5 145409265 145409728 -7127531 + RLTR20B2 LTR ERVK 1 452 -108 1 1694 570 67 0 0 chr5 145409728 145409803 -7127456 + (TCCCC)n Simple_repeat Simple_repeat 4 78 0 1 1694 2825 148 32 101 chr5 145409803 145409845 -7127414 + RLTR20B2 LTR ERVK 453 465 -95 1 1694 186 43 0 0 chr5 145409845 145409868 -7127391 + (TG)n Simple_repeat Simple_repeat 2 24 0 1 1694 2825 148 32 101 chr5 145409868 145409963 -7127296 + RLTR20B2 LTR ERVK 466 559 -1 1 1694 847 276 147 18 chr5 145409963 145410233 -7127026 - MTD LTR MaLR -97 322 18 1 1694 459 216 67 19 chr5 145410845 145410949 -7126310 + B1_Mus1 SINE Alu 35 143 -5 1 1694 1752 168 69 11 chr5 145411195 145411545 -7125714 - MTD LTR MaLR 0 419 50 1 1694 311 167 0 15 chr5 145411571 145411638 -7125621 + GA-rich Low_complexity Low_complexity 2 67 0 1 1694 212 130 22 0 chr5 145413530 145413576 -7123683 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 1 1694 182 242 0 21 chr5 145413758 145413804 -7123455 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 1 1694 1800 121 27 66 chr5 145413804 145414139 -7123120 - RLTRETN_Mm LTR ERVK 0 322 1 1 1694 182 242 0 21 chr5 145414139 145414185 -7123074 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 1 1694 412 264 64 143 chr5 145414329 145414749 -7122510 + RMER10A LTR ERVL 29 415 -27 1 1694 707 176 0 13 chr5 145414782 145414937 -7122322 + (TGGA)n Simple_repeat Simple_repeat 3 155 0 1 1694 246 128 0 0 chr5 145414959 145414998 -7122261 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 1 1694 299 322 64 32 chr5 145415230 145415355 -7121904 + MTE2a LTR MaLR 25 153 -206 1 1694 803 158 11 9 chr5 145415352 145415491 -7121768 - B1_Mus1 SINE Alu 0 148 17 1 1694 307 259 36 36 chr5 145415624 145415708 -7121551 + MTE2a LTR MaLR 278 365 -14 1 1694 4507 14 0 0 chr5 145415851 145416344 -7120915 + MT2_Mm LTR ERVL 1 493 0 1 1694 229 291 0 0 chr5 145416557 145416574 -7120685 + MTE2a-int LTR MaLR 631 733 -776 1 1694 640 81 0 0 chr5 145416574 145416660 -7120599 + B1_Mus2 SINE Alu 1 86 -61 1 1694 2559 101 173 7 chr5 145416653 145417074 -7120185 - RLTR44C LTR ERVK -11 491 1 1 1694 5397 30 0 0 chr5 145417074 145417718 -7119541 - RLTR44-int LTR ERVK 0 2812 2169 1 1694 4564 59 0 8 chr5 145417717 145418311 -7118948 - RLTR44-int LTR ERVK -1347 1465 877 1 1694 918 77 0 8 chr5 145418332 145418463 -7118796 - RLTR44-int LTR ERVK -1867 945 816 1 1694 1473 109 7 45 chr5 145418491 145418760 -7118499 - RLTR44-int LTR ERVK -2553 259 1 1 1694 3062 82 51 9 chr5 145418761 145419135 -7118124 - RLTR44C LTR ERVK -7 495 103 1 1694 538 181 61 61 chr5 145419135 145419282 -7117977 + B1_Mm SINE Alu 1 147 0 1 1694 336 143 0 0 chr5 145419343 145419399 -7117860 + (CTG)n Simple_repeat Simple_repeat 1 56 0 1 1694 1562 178 130 11 chr5 145419421 145419774 -7117485 + MTD LTR MaLR 25 419 0 1 1694 382 308 58 8 chr5 145419863 145419984 -7117275 + B1_Mur2 SINE Alu 1 127 -22 1 1694 252 200 0 0 chr5 145420026 145420081 -7117178 + G-rich Low_complexity Low_complexity 2 56 0 1 1694 331 158 0 109 chr5 145420126 145420163 -7117096 + L1MD LINE L1 3124 3159 -2987 1 1694 466 198 128 10 chr5 145420163 145420265 -7116994 + PB1D9 SINE Alu 1 114 -6 1 1694 331 158 0 109 chr5 145420265 145420319 -7116940 + L1MD LINE L1 3160 3205 -2941 1 1694 596 173 7 0 chr5 145420348 145420498 -7116761 + (TG)n Simple_repeat Simple_repeat 1 151 0 1 1694 552 172 0 0 chr5 145420568 145420713 -7116546 + (TG)n Simple_repeat Simple_repeat 2 146 0 1 1694 370 270 221 25 chr5 145420758 145420989 -7116270 - B4 SINE B4 -14 278 2 1 1694 757 272 0 66 chr5 145421069 145421266 -7115993 + B3A SINE B2 15 198 0 1 1694 222 111 0 27 chr5 145421432 145421469 -7115790 + L2a LINE L2 3387 3422 -4 1 1694 380 208 50 80 chr5 145421505 145421660 -7115599 - ORR1E LTR MaLR 0 379 217 1 1694 718 250 0 0 chr5 145421608 145421736 -7115523 + B1F2 SINE Alu 9 136 -13 1 1694 819 248 33 134 chr5 145421745 145422052 -7115207 - MTE2a LTR MaLR -84 295 20 1 1694 372 284 0 0 chr5 145422204 145422285 -7114974 - ID_B1 SINE B4 -67 157 77 1 1694 486 298 137 72 chr5 145423051 145423183 -7114076 + ORR1E LTR MaLR 29 177 -182 1 1694 3203 65 22 0 chr5 145423183 145423595 -7113664 + BGLII LTR ERVK 1 421 0 1 1694 486 298 137 72 chr5 145423595 145423737 -7113522 + ORR1E LTR MaLR 178 325 -34 1 1694 1452 224 15 63 chr5 145423737 145424133 -7113126 - MTEb LTR MaLR -2 377 1 1 1694 486 298 137 72 chr5 145424133 145424164 -7113095 + ORR1E LTR MaLR 326 355 -4 1 1694 512 250 105 26 chr5 145424165 145424317 -7112942 + RSINE1 SINE B4 2 165 0 1 1694 434 97 0 98 chr5 145424353 145424547 -7112712 + (TA)n Simple_repeat Simple_repeat 2 176 0 1 1694 180 0 0 0 chr5 145424551 145424571 -7112688 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1694 186 43 0 0 chr5 145424571 145424593 -7112666 + (TA)n Simple_repeat Simple_repeat 2 24 0 1 1694 1059 254 30 47 chr5 145425624 145425921 -7111338 + MTE2b LTR MaLR 49 340 -39 1 1694 185 331 79 28 chr5 145425931 145426007 -7111252 + MIR SINE MIR 43 116 -160 1 1694 1056 274 4 37 chr5 145426021 145426294 -7110965 - MTE2a LTR MaLR -43 336 73 1 1694 468 236 55 31 chr5 145426423 145426539 -7110720 + B1F1 SINE Alu 19 139 -10 1 1694 489 34 0 0 chr5 145426539 145426598 -7110661 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 1 1694 278 273 0 0 chr5 145426610 145426676 -7110583 + A-rich Low_complexity Low_complexity 5 70 0 1 1694 392 226 83 19 chr5 145426676 145426784 -7110475 + B4A SINE B4 8 122 -170 1 1694 489 230 0 20 chr5 145426877 145426979 -7110280 + MLT1C LTR MaLR 360 459 -8 1 1694 478 258 67 30 chr5 145427277 145427358 -7109901 + B4A SINE B4 3 172 -120 1 1694 219 284 111 40 chr5 145427358 145427441 -7109818 + PB1D10 SINE Alu 1 89 -28 1 1694 252 0 0 0 chr5 145427441 145427469 -7109790 + (GA)n Simple_repeat Simple_repeat 1 28 0 1 1694 219 284 111 40 chr5 145427469 145427484 -7109775 + PB1D10 SINE Alu 90 105 -12 1 1694 598 200 172 0 chr5 145428019 145428164 -7109095 - RMER5 LTR ERV1 -21 513 344 1 1694 804 166 27 7 chr5 145428179 145428325 -7108934 - B1_Mur2 SINE Alu 0 149 1 1 1694 345 230 13 86 chr5 145428338 145428465 -7108794 - B3A SINE B2 -93 123 5 1 1694 258 116 0 0 chr5 145428466 145428509 -7108750 + (TTTG)n Simple_repeat Simple_repeat 4 46 0 1 1694 267 230 27 13 chr5 145428512 145428587 -7108672 - ID4 SINE ID -6 77 2 1 1694 2328 208 94 142 chr5 145429740 145430545 -7106714 + RMER13A LTR ERVK 63 829 -31 1 1694 5739 45 65 0 chr5 145430707 145431404 -7105855 + RLTR4_Mm LTR ERV1 1 742 0 1 1694 66146 9 2 0 chr5 145431404 145438991 -7098268 + RLTR4_MM-int LTR ERV1 1 7601 0 1 1694 5739 45 65 0 chr5 145438991 145439688 -7097571 + RLTR4_Mm LTR ERV1 1 742 0 1 1694 3225 53 9 16 chr5 145439896 145440320 -7096939 + BGLII LTR ERVK 1 421 0 1 1694 745 270 47 14 chr5 145441236 145441450 -7095809 + ID_B1 SINE B4 2 222 -2 1 1694 212 208 0 127 chr5 145441467 145441522 -7095737 + B1F1 SINE Alu 11 58 -91 1 1694 563 151 0 19 chr5 145441524 145441632 -7095627 + GA-rich Low_complexity Low_complexity 4 109 0 1 1694 307 256 21 75 chr5 145441943 145442036 -7095223 + MLT1A0 LTR MaLR 1 88 -277 1 1694 233 264 0 0 chr5 145442041 145442094 -7095165 + PB1D10 SINE Alu 34 86 -31 1 1694 834 285 72 22 chr5 145442109 145442385 -7094874 + B4A SINE B4 1 290 -2 1 1694 560 84 0 12 chr5 145442395 145442479 -7094780 + (GGAGA)n Simple_repeat Simple_repeat 2 84 0 1 1694 2001 161 124 19 chr5 145442684 145442787 -7094472 - MTD LTR MaLR 0 419 318 1 1694 3090 45 47 5 chr5 145442787 145443171 -7094088 + MTB LTR MaLR 1 400 0 1 1694 2001 161 124 19 chr5 145443171 145443446 -7093813 - MTD LTR MaLR -102 317 1 1 1694 521 55 14 0 chr5 145443880 145443953 -7093306 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 1 1694 492 239 138 0 chr5 145443962 145444071 -7093188 - RSINE1 SINE B4 -38 127 4 1 1694 239 118 0 0 chr5 145444075 145444109 -7093150 - B4A SINE B4 -67 225 192 1 1694 278 281 0 11 chr5 145444079 145444176 -7093083 - PB1D9 SINE Alu -6 114 22 1 1694 451 217 79 55 chr5 145444182 145444309 -7092950 - B1_Mur1 SINE Alu -18 131 2 1 1694 624 221 88 0 chr5 145444330 145444466 -7092793 - B1_Mur2 SINE Alu 0 149 2 1 1694 285 293 0 24 chr5 145444477 145444561 -7092698 - ID2 SINE ID -1 82 1 1 1694 606 252 109 67 chr5 145444929 145445026 -7092233 + ID_B1 SINE B4 3 196 -96 1 1694 649 177 0 26 chr5 145445026 145445142 -7092117 + B1F2 SINE Alu 37 149 0 1 1694 606 252 109 67 chr5 145445142 145445166 -7092093 + ID_B1 SINE B4 197 248 -44 1 1694 385 306 128 46 chr5 145445157 145445352 -7091907 + B4A SINE B4 82 292 0 1 1694 555 236 0 0 chr5 145445389 145445954 -7091305 + (CA)n Simple_repeat Simple_repeat 1 565 0 1 1694 212 122 24 0 chr5 145447078 145447119 -7090140 + (TATG)n Simple_repeat Simple_repeat 2 43 0 1 1694 593 296 144 12 chr5 145447391 145447647 -7089612 + B4A SINE B4 1 290 -2 1 1694 852 132 0 0 chr5 145447761 145447927 -7089332 + (TTGG)n Simple_repeat Simple_repeat 2 167 0 1 1694 489 232 18 9 chr5 145447933 145448046 -7089213 - PB1D10 SINE Alu -1 116 3 1 1694 429 257 55 0 chr5 145448167 145448274 -7088985 + B1F1 SINE Alu 1 113 -36 1 1694 486 250 72 27 chr5 145448274 145448385 -7088874 + RSINE1 SINE B4 2 117 -48 1 1694 495 0 0 0 chr5 145448398 145448453 -7088806 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1694 820 275 48 58 chr5 145448704 145448997 -7088262 - B4A SINE B4 0 292 3 1 1694 444 171 0 0 chr5 145449670 145449752 -7087507 + (TG)n Simple_repeat Simple_repeat 1 82 0 1 1694 367 196 523 18 chr5 145449754 145449863 -7087396 - RSINE1 SINE B4 0 165 2 1 1694 306 247 157 0 chr5 145450094 145450183 -7087076 - RMER20B LTR ERVK -391 236 134 1 1694 537 294 63 0 chr5 145450352 145450495 -7086764 - ID_B1 SINE B4 -71 153 2 1 1694 297 326 10 10 chr5 145450598 145450697 -7086562 - MLT1B LTR MaLR -72 318 220 1 1694 1873 210 28 20 chr5 145450717 145451115 -7086144 + MTD LTR MaLR 5 405 -14 1 1694 226 167 143 143 chr5 145451706 145451783 -7085476 - MLT1B LTR MaLR -262 128 52 1 1694 567 0 0 0 chr5 145452190 145452253 -7085006 + (TC)n Simple_repeat Simple_repeat 1 63 0 1 1694 632 254 91 72 chr5 145452802 145453010 -7084249 - B4 SINE B4 0 292 81 1 1694 226 323 48 101 chr5 145452999 145453067 -7084192 - B3A SINE B2 -1 197 2 1 1694 560 256 7 14 chr5 145453067 145453206 -7084053 - RSINE1 SINE B4 -25 140 3 1 1694 377 256 11 22 chr5 145453214 145453306 -7083953 - B4A SINE B4 -201 91 1 1 1694 240 295 62 47 chr5 145453471 145453671 -7083588 - RLTR20C LTR ERVK -146 213 22 1 1694 259 73 0 0 chr5 145453963 145454004 -7083255 - B3 SINE B2 -4 212 172 1 1694 319 280 8 67 chr5 145454005 145454139 -7083120 + B3 SINE B2 91 216 0 1 1694 952 253 41 47 chr5 145454423 145454767 -7082492 + RLTR15 LTR ERVK 3 344 -15 1 1694 230 79 51 26 chr5 145454769 145454808 -7082451 - ID SINE ID -182 42 3 1 1694 277 268 62 16 chr5 145454891 145455020 -7082239 - L1MB2 LINE L1 -113 6058 5924 1 1694 1203 188 14 0 chr5 145455123 145455336 -7081923 + B3 SINE B2 1 216 0 1 1694 964 77 191 6 chr5 145455459 145455616 -7081643 + B2_Mm2 SINE B2 4 189 -6 1 1694 710 222 68 62 chr5 145455858 145456050 -7081209 + B4 SINE B4 100 292 0 1 1694 263 243 53 13 chr5 145456593 145456668 -7080591 + MIRb SINE MIR 50 127 -141 1 1694 892 247 31 22 chr5 145456846 145457070 -7080189 + B4 SINE B4 5 230 -62 1 1694 497 159 34 34 chr5 145457170 145457346 -7079913 + (CA)n Simple_repeat Simple_repeat 2 177 0 1 1694 257 242 60 15 chr5 145457838 145457905 -7079354 - tRNA-Ala-GCY_ tRNA tRNA -4 71 2 1 1694 1440 91 28 0 chr5 145457906 145458122 -7079137 - ZP3AR Satellite Satellite -4 222 1 1 1694 388 306 6 6 chr5 145458150 145458311 -7078948 - L1MB3 LINE L1 -49 6134 5974 1 1694 345 208 0 77 chr5 145458346 145458424 -7078835 - B1_Mur2 SINE Alu -36 113 42 1 1694 513 119 0 0 chr5 145458426 145458527 -7078732 + (TCTCCC)n Simple_repeat Simple_repeat 4 104 0 1 1694 767 252 70 61 chr5 145458580 145458808 -7078451 - B4 SINE B4 -59 233 4 1 1694 627 240 151 36 chr5 145458835 145458942 -7078317 - B3 SINE B2 0 216 99 1 1694 985 204 92 0 chr5 145458942 145459148 -7078111 - URR1A DNA MER1_type 0 226 2 1 1694 627 232 189 22 chr5 145459148 145459249 -7078010 - B3 SINE B2 -106 110 1 1 1694 702 285 59 47 chr5 145459627 145459881 -7077378 + B4 SINE B4 9 265 -27 1 1694 362 121 15 0 chr5 145459960 145460026 -7077233 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1694 1245 83 0 0 chr5 145460184 145460364 -7076895 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1 1694 188 149 0 21 chr5 145460364 145460404 -7076855 + GA-rich Low_complexity Low_complexity 9 48 0 1 1694 978 140 0 0 chr5 145460413 145460592 -7076667 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 1 1694 284 233 43 14 chr5 145460727 145460832 -7076427 + MTE2b LTR MaLR 250 362 -17 1 1694 306 303 47 31 chr5 145461168 145461367 -7075892 + MER34A LTR ERV1 285 492 -95 1 1694 437 276 108 34 chr5 145461355 145461531 -7075728 - MTEb LTR MaLR -4 375 187 1 1694 614 233 0 0 chr5 145461512 145461628 -7075631 + B3A SINE B2 27 142 -56 1 1694 488 59 0 14 chr5 145461629 145461698 -7075561 + (CA)n Simple_repeat Simple_repeat 1 68 0 1 1694 1423 55 11 27 chr5 145461700 145461886 -7075373 - B2_Mm1t SINE B2 -10 183 1 1 1694 2392 188 73 27 chr5 145461920 145462400 -7074859 - RLTR18B LTR ERVK -4 508 7 1 1694 210 349 0 16 chr5 145462513 145462527 -7074732 + B4 SINE B4 72 84 -208 1 1694 438 227 56 11 chr5 145462527 145462616 -7074643 + PB1D10 SINE Alu 1 93 -24 1 1694 474 221 301 6 chr5 145462618 145462791 -7074468 - RMER15 LTR ERVL -13 562 339 1 1694 215 219 28 19 chr5 145462797 145462904 -7074355 + CT-rich Low_complexity Low_complexity 2 109 0 1 1694 240 218 0 0 chr5 145462908 145462963 -7074296 - MT2A LTR ERVL -2 558 488 1 1694 634 137 0 14 chr5 145462963 145463111 -7074148 + GA-rich Low_complexity Low_complexity 1 146 0 1 1694 2547 170 40 11 chr5 145463113 145463558 -7073701 - MT2A LTR ERVL -73 460 3 1 1694 891 28 0 0 chr5 145463571 145463677 -7073582 + (TCC)n Simple_repeat Simple_repeat 2 107 0 1 1694 210 333 17 0 chr5 145463762 145463822 -7073437 + B4A SINE B4 88 148 -144 1 1694 236 279 33 0 chr5 145463769 145463830 -7073429 + B1_Mus1 SINE Alu 11 73 -75 1 1694 323 156 141 0 chr5 145463904 145463968 -7073291 - ID4_ SINE ID -10 73 1 1 1694 1617 25 5 0 chr5 145463968 145464230 -7073029 - ZP3AR Satellite Satellite -11 263 1 1 1694 232 246 0 34 chr5 145464229 145464288 -7072971 - ID_B1 SINE B4 -77 147 91 1 1694 259 223 0 19 chr5 145464236 145464295 -7072964 - B1F1 SINE Alu -87 61 4 1 1694 181 242 182 81 chr5 145465045 145465144 -7072115 - L2c LINE L2 -31 3356 3248 1 1694 558 0 0 0 chr5 145465232 145465294 -7071965 + (TC)n Simple_repeat Simple_repeat 1 62 0 1 1694 387 229 151 8 chr5 145465294 145465413 -7071846 + B1F SINE Alu 9 144 -5 1 1694 467 217 94 0 chr5 145465308 145465414 -7071845 + ID_B1 SINE B4 105 220 -4 1 1694 859 157 251 17 chr5 145465429 145465604 -7071655 + B3 SINE B2 1 216 0 1 1694 416 104 0 15 chr5 145465634 145465702 -7071557 + (CA)n Simple_repeat Simple_repeat 2 68 0 1 1694 511 270 0 101 chr5 145465719 145465888 -7071371 + B3A SINE B2 2 153 -45 1 1694 684 258 6 24 chr5 145465857 145466024 -7071235 - B4 SINE B4 -124 168 5 1 1694 584 287 38 0 chr5 145466188 145466345 -7070914 - RSINE1 SINE B4 0 165 3 1 1694 342 167 0 0 chr5 145466873 145466932 -7070327 + B3A SINE B2 1 59 -139 1 1694 1640 275 80 59 chr5 145466932 145467495 -7069764 - RMER15 LTR ERVL 0 575 1 1 1694 323 91 7 84 chr5 145467499 145467560 -7069699 + B3 SINE B2 59 124 -74 1 1694 414 300 28 121 chr5 145467560 145467882 -7069377 + B4A SINE B4 1 292 0 1 1694 269 291 98 38 chr5 145467882 145467952 -7069307 + B3A SINE B2 125 197 -1 1 1694 609 252 122 29 chr5 145467965 145468169 -7069090 + ID_B1 SINE B4 1 223 -1 1 1694 557 288 20 20 chr5 145468177 145468326 -7068933 + RSINE1 SINE B4 5 153 -12 1 1694 1246 110 44 2 chr5 145469145 145469412 -7067847 - ZP3AR Satellite Satellite -45 278 1 1 1694 3371 30 8 10 chr5 145469512 145469909 -7067350 + MTA_Mm LTR MaLR 1 396 0 1 1694 1510 198 106 15 chr5 145469921 145470260 -7066999 + ORR1D2 LTR MaLR 1 370 0 1 1694 250 219 158 0 chr5 145470260 145470342 -7066917 + ORR1D2-int LTR MaLR 1 95 -1163 1 1694 536 226 96 8 chr5 145470450 145470575 -7066684 + B1F1 SINE Alu 1 136 -13 1 1694 1370 82 38 0 chr5 145470576 145470760 -7066499 + B2_Mm2 SINE B2 1 191 -4 1 1694 244 246 32 32 chr5 145470959 145471022 -7066237 + ORR1E LTR MaLR 7 69 -290 1 1694 648 148 163 8 chr5 145471139 145471268 -7065991 + B1_Mur4 SINE Alu 2 150 0 1 1694 1092 259 38 29 chr5 145471329 145471618 -7065641 - B4 SINE B4 -2 290 21 1 1694 390 21 0 0 chr5 145471702 145471749 -7065510 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1 1694 1190 107 0 12 chr5 145471749 145471908 -7065351 - B2_Mm2 SINE B2 -37 158 1 1 1694 424 188 129 0 chr5 145471931 145472016 -7065243 + PB1D10 SINE Alu 10 105 -12 1 1694 429 205 0 0 chr5 145472017 145472134 -7065125 + (TAGA)n Simple_repeat Simple_repeat 2 118 0 1 1694 309 189 50 6 chr5 145472217 145472377 -7064882 + (TG)n Simple_repeat Simple_repeat 1 167 0 1 1694 1686 21 5 0 chr5 145473126 145473318 -7063941 + B2_Mm1t SINE B2 1 193 0 1 1694 230 250 0 0 chr5 145473322 145473366 -7063893 - ORR1E LTR MaLR -42 317 274 1 1694 21 0 0 0 chr5 145473406 145473427 -7063832 + GC_rich Low_complexity Low_complexity 1 21 0 1 1694 2256 209 22 16 chr5 145473427 145473874 -7063385 - MT2A LTR ERVL -78 455 6 1 1694 952 274 63 38 chr5 145474074 145474103 -7063156 - MTE2a LTR MaLR 0 379 345 1 1694 681 13 0 0 chr5 145474103 145474181 -7063078 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 1 1694 952 274 63 38 chr5 145474181 145474466 -7062793 - MTE2a LTR MaLR -35 344 58 1 1694 325 207 45 22 chr5 145474488 145474577 -7062682 + RSINE1 SINE B4 75 165 0 1 1694 34 0 0 0 chr5 145474589 145474623 -7062636 + AT_rich Low_complexity Low_complexity 1 34 0 1 1694 850 228 23 46 chr5 145474629 145474845 -7062414 + B3 SINE B2 1 211 -5 1 1694 186 43 0 0 chr5 145474880 145474903 -7062356 + (CGAAA)n Simple_repeat Simple_repeat 3 25 0 1 1694 779 253 36 57 chr5 145475352 145475545 -7061714 - B3A SINE B2 0 198 10 1 1694 1246 223 103 66 chr5 145475639 145475989 -7061270 - MTE2a LTR MaLR 0 379 17 1 1694 569 281 58 23 chr5 145475998 145476169 -7061090 - B3A SINE B2 -20 178 2 1 1694 515 274 97 0 chr5 145476815 145476939 -7060320 + ID_B1 SINE B4 70 205 -19 1 1694 679 201 39 98 chr5 145476942 145477146 -7060113 + B3A SINE B2 6 197 -1 1 1694 814 216 90 21 chr5 145477157 145477346 -7059913 + B3 SINE B2 15 216 0 1 1694 329 102 0 17 chr5 145477354 145477414 -7059845 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1694 742 251 88 46 chr5 145477421 145477684 -7059575 - B4A SINE B4 -18 274 1 1 1694 283 155 103 0 chr5 145477689 145477747 -7059512 - B4A SINE B4 -61 231 168 1 1694 22 0 0 0 chr5 145477907 145477929 -7059330 + AT_rich Low_complexity Low_complexity 1 22 0 1 1694 486 196 0 0 chr5 145477929 145478041 -7059218 + (TG)n Simple_repeat Simple_repeat 1 112 0 1 1694 292 341 57 68 chr5 145478334 145478410 -7058849 - MIRb SINE MIR 0 276 200 1 1694 1095 241 18 161 chr5 145478410 145478850 -7058409 + MTE2a LTR MaLR 1 377 -2 1 1694 292 348 11 58 chr5 145478850 145478970 -7058289 - MIRb SINE MIR -69 199 82 1 1694 416 282 22 30 chr5 145478985 145479120 -7058139 + ID_B1 SINE B4 91 224 0 1 1694 405 284 78 0 chr5 145479122 145479224 -7058035 + RSINE1 SINE B4 1 110 -55 1 1694 915 151 13 20 chr5 145479393 145479542 -7057717 + B1_Mur4 SINE Alu 3 150 0 1 1694 319 276 154 0 chr5 145479928 145480051 -7057208 - RSINE1 SINE B4 -19 146 5 1 1694 1720 26 0 0 chr5 145480102 145480294 -7056965 - B2_Mm1a SINE B2 0 193 2 1 1694 1319 96 16 17 chr5 145480308 145480527 -7056732 - B2_Mm2 SINE B2 0 216 1 1 1694 288 308 43 11 chr5 145481647 145481739 -7055520 + ID_B1 SINE B4 75 169 -55 1 1694 289 292 44 11 chr5 145481675 145481765 -7055494 + PB1D10 SINE Alu 25 117 0 1 1694 1198 75 0 0 chr5 145482012 145482158 -7055101 + B1_Mus2 SINE Alu 2 147 0 1 1694 654 234 189 5 chr5 145482269 145482454 -7054805 - ID_B1 SINE B4 -3 221 3 1 1694 219 69 0 0 chr5 145482750 145482779 -7054480 + (TCC)n Simple_repeat Simple_repeat 1 29 0 1 1694 310 163 255 61 chr5 145482779 145482877 -7054382 - PB1D9 SINE Alu -3 117 1 1 1694 435 313 161 5 chr5 145482912 145483111 -7054148 + Charlie5 DNA MER1_type 2237 2466 -158 1 1694 746 245 0 0 chr5 145483111 145483250 -7054009 + RSINE1 SINE B4 3 141 -24 1 1694 330 26 0 0 chr5 145483250 145483289 -7053970 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1694 291 54 0 0 chr5 145483292 145483329 -7053930 + (TTAA)n Simple_repeat Simple_repeat 1 37 0 1 1694 1626 49 13 0 chr5 145483753 145484255 -7053004 + ZP3AR Satellite Satellite 1 508 0 1 1694 213 213 0 0 chr5 145484344 145484391 -7052868 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1694 1316 83 33 6 chr5 145484701 145484712 -7052547 - B2_Mm2 SINE B2 -8 187 177 1 1694 456 19 0 0 chr5 145484712 145484765 -7052494 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 1 1694 1316 83 33 6 chr5 145484765 145484934 -7052325 - B2_Mm2 SINE B2 -19 176 2 1 1694 1698 5 0 16 chr5 145485030 145485221 -7052038 + B2_Mm1a SINE B2 2 189 -4 1 1694 1566 28 0 16 chr5 145485259 145485441 -7051818 - B2_Mm1a SINE B2 -14 179 1 1 1694 299 251 16 6 chr5 145485451 145485526 -7051733 - ID4 SINE ID -67 85 12 1 1694 400 274 63 16 chr5 145485543 145485669 -7051590 - B1F SINE Alu 0 149 18 1 1694 222 118 0 0 chr5 145485676 145485710 -7051549 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 1 1694 797 194 8 0 chr5 145485724 145485858 -7051401 - RSINE1 SINE B4 -28 137 3 1 1694 233 93 73 18 chr5 145485984 145486039 -7051220 + CT-rich Low_complexity Low_complexity 2 59 0 1 1694 434 280 211 0 chr5 145486560 145486735 -7050524 - B3 SINE B2 -4 212 1 1 1694 223 180 98 20 chr5 145486751 145486802 -7050457 - MIRm SINE MIR -117 159 105 1 1694 186 214 0 45 chr5 145487011 145487055 -7050204 + MIR SINE MIR 116 157 -105 1 1694 975 108 30 78 chr5 145487098 145487328 -7049931 - RMER17C LTR ERVK -191 219 1 1 1694 322 214 0 51 chr5 145487328 145487385 -7049874 - RSINE1 SINE B4 -109 56 3 1 1694 1248 38 132 6 chr5 145487567 145487726 -7049533 + B2_Mm2 SINE B2 2 180 -15 1 1694 207 0 0 0 chr5 145487736 145487759 -7049500 + (TG)n Simple_repeat Simple_repeat 1 23 0 1 1694 450 0 0 0 chr5 145487759 145487808 -7049451 + (GA)n Simple_repeat Simple_repeat 1 50 0 1 1694 469 229 187 8 chr5 145487812 145487935 -7049324 - RSINE1 SINE B4 -19 146 2 1 1694 195 204 0 0 chr5 145488368 145488412 -7048847 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1 1694 374 152 333 0 chr5 145488876 145488975 -7048284 - B1_Mur1 SINE Alu -13 136 5 1 1694 274 207 0 134 chr5 145489440 145489455 -7047804 - RSINE1 SINE B4 -60 105 96 1 1694 1252 142 352 110 chr5 145489455 145489647 -7047612 + RLTR24 LTR ERV1 1 265 -264 1 1694 207 0 0 0 chr5 145489647 145489670 -7047589 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 1 1694 1252 142 352 110 chr5 145489670 145489903 -7047356 + RLTR24 LTR ERV1 266 529 0 1 211 274 207 0 134 chr5 145489903 145489954 -7047305 - RSINE1 SINE B4 -70 95 48 1 1695 233 298 43 147 chr5 145490019 145490104 -7047155 + MT2B LTR ERVL 90 244 -357 1 1695 633 248 14 49 chr5 145490104 145490248 -7047011 + B1F2 SINE Alu 2 140 -9 1 1695 233 298 43 147 chr5 145490248 145490298 -7046961 + MT2B LTR ERVL 245 339 -262 1 1695 1288 31 43 0 chr5 145490463 145490626 -7046633 - LTRIS2 LTR ERV1 0 564 395 1 1695 289 274 26 62 chr5 145490667 145490780 -7046479 - MER92B LTR ERV1 -411 225 117 1 1695 723 196 38 57 chr5 145490833 145490990 -7046269 - B3 SINE B2 0 216 63 1 1695 359 224 8 116 chr5 145491317 145491438 -7045821 - PB1D7 SINE Alu -10 110 3 1 1695 1572 143 60 206 chr5 145491555 145491968 -7045291 + ORR1C1 LTR MaLR 26 378 0 1 1695 346 204 92 51 chr5 145492149 145492213 -7045046 - MTD LTR MaLR 0 419 357 1 1695 3327 48 5 0 chr5 145492213 145492611 -7044648 - MTB LTR MaLR 0 400 1 1 1695 346 204 92 51 chr5 145492611 145492642 -7044617 - MTD LTR MaLR -63 356 320 1 1695 795 272 19 107 chr5 145492642 145492707 -7044552 - MT2A LTR ERVL 0 533 468 1 1695 860 149 13 20 chr5 145492707 145492858 -7044401 + B1_Mur4 SINE Alu 1 150 0 1 1695 795 272 19 107 chr5 145492858 145493026 -7044233 - MT2A LTR ERVL -66 467 327 1 1695 1317 158 5 13 chr5 145493026 145493250 -7044009 - URR1A DNA MER1_type 0 226 5 1 1695 795 272 19 107 chr5 145493250 145493332 -7043927 - MT2A LTR ERVL -207 326 245 1 1695 456 289 0 8 chr5 145493328 145493450 -7043809 - MT2A LTR ERVL -412 121 1 1 1695 501 274 78 94 chr5 145493450 145493722 -7043537 - MTD LTR MaLR -144 235 3 1 1695 1329 35 134 0 chr5 145493933 145494105 -7043154 - B2_Mm2 SINE B2 0 195 1 1 1695 447 305 41 12 chr5 145494184 145494353 -7042906 - B4 SINE B4 -117 175 2 1 1695 597 251 52 0 chr5 145494367 145494520 -7042739 - ID_B1 SINE B4 -18 206 50 1 1695 2223 123 122 14 chr5 145495266 145495636 -7041623 + MTC LTR MaLR 12 421 0 1 1695 279 71 0 0 chr5 145496430 145496472 -7040787 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 1 1695 587 168 93 9 chr5 145496473 145496581 -7040678 - PB1D9 SINE Alu -1 119 3 1 1695 480 35 0 0 chr5 145497008 145497066 -7040193 + (TTCC)n Simple_repeat Simple_repeat 3 60 0 1 1695 814 183 0 21 chr5 145497066 145497211 -7040048 - B1_Mur2 SINE Alu -7 142 1 1 1695 190 95 0 45 chr5 145497304 145497348 -7039911 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1695 566 231 10 98 chr5 145498839 145499001 -7038258 + RSINE1 SINE B4 2 148 -17 1 1695 963 148 0 13 chr5 145499004 145499155 -7038104 + B1_Mur4 SINE Alu 1 149 -1 1 1695 459 0 0 0 chr5 145499219 145499270 -7037989 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1695 494 242 11 0 chr5 145499429 145499524 -7037735 - B4 SINE B4 -195 97 2 1 1695 393 298 45 22 chr5 145499726 145499860 -7037399 + B4A SINE B4 107 243 -49 1 1695 222 37 0 0 chr5 145499897 145499924 -7037335 + (TG)n Simple_repeat Simple_repeat 1 27 0 1 1695 320 239 14 40 chr5 145499926 145500000 -7037259 - B3 SINE B2 -54 162 91 1 1695 342 250 0 36 chr5 145500008 145500091 -7037168 - B3A SINE B2 -114 84 5 1 1695 1110 192 65 10 chr5 145500105 145500305 -7036954 - B3 SINE B2 -4 212 2 2 1695 896 123 169 0 chr5 145500414 145500568 -7036691 + B2_Mm2 SINE B2 1 180 -15 3 1695 213 65 0 0 chr5 145500568 145500599 -7036660 + (TA)n Simple_repeat Simple_repeat 2 32 0 4 1695 604 288 64 51 chr5 145500656 145500843 -7036416 + RMER10A LTR ERVL 65 260 -182 5 1695 3170 68 15 0 chr5 145500843 145501237 -7036022 + MTB LTR MaLR 1 400 0 6 1695 604 288 64 51 chr5 145501237 145501422 -7035837 + RMER10A LTR ERVL 261 441 -1 5 1695 1269 97 53 11 chr5 145501796 145501983 -7035276 - B2_Mm2 SINE B2 0 195 1 7 1695 756 233 165 14 chr5 145502012 145502230 -7035029 + MTE2a LTR MaLR 120 370 -9 8 1695 180 77 0 0 chr5 145502655 145502681 -7034578 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1695 781 182 0 8 chr5 145502685 145502818 -7034441 - RSINE1 SINE B4 -31 134 3 1 1695 391 266 59 65 chr5 145502807 145502828 -7034431 - B4A SINE B4 -59 233 213 1 1695 656 265 7 39 chr5 145502828 145502981 -7034278 - B1_Mur1 SINE Alu -1 148 1 1 1695 391 266 59 65 chr5 145502981 145503112 -7034147 - B4A SINE B4 -80 212 82 1 1695 704 274 13 0 chr5 145503118 145503271 -7033988 - B3 SINE B2 0 216 62 1 1695 886 129 0 0 chr5 145503361 145503485 -7033774 + B1_Mur4 SINE Alu 1 124 -26 1 1695 1208 48 0 33 chr5 145503779 145503923 -7033336 + B1_Mus1 SINE Alu 2 141 -7 1 1695 243 0 0 0 chr5 145503923 145503950 -7033309 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1695 1368 74 40 0 chr5 145503961 145504136 -7033123 + B2_Mm2 SINE B2 2 183 -12 1 1695 216 0 0 0 chr5 145504136 145504160 -7033099 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1695 214 212 30 15 chr5 145504207 145504274 -7032985 + (TGG)n Simple_repeat Simple_repeat 2 69 0 1 1695 914 285 66 19 chr5 145504800 145505058 -7032201 + MTE2b LTR MaLR 1 270 -109 2 1695 2628 170 44 20 chr5 145505066 145505564 -7031695 - RLTR11A2 LTR ERVK -17 510 1 2 1695 275 175 57 91 chr5 145505583 145505671 -7031588 - MYSERV-int LTR ERVK -8 6542 6458 2 1695 586 79 0 0 chr5 145505675 145505751 -7031508 + B2_Mm2 SINE B2 2 77 -118 2 1695 1384 71 11 5 chr5 145505762 145505947 -7031312 + B2_Mm1a SINE B2 1 186 -7 2 1695 4070 196 85 19 chr5 145505951 145506830 -7030429 - MYSERV-int LTR ERVK -84 6466 5524 2 1695 1581 32 0 55 chr5 145506830 145507030 -7030229 + B2_Mm1a SINE B2 2 190 -3 2 1695 4070 199 72 37 chr5 145507030 145507292 -7029967 - MYSERV-int LTR ERVK -1027 5523 5373 2 1695 296 0 51 0 chr5 145507292 145507331 -7029928 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2 1695 3924 204 56 59 chr5 145507331 145507377 -7029882 - MYSERV-int LTR ERVK -1228 1098 1047 2 1695 296 261 6 118 chr5 145507378 145507565 -7029694 - RMER4B LTR ERVK -59 526 251 2 1695 227 31 0 30 chr5 145507667 145507700 -7029559 + (CCCCCA)n Simple_repeat Simple_repeat 6 37 0 2 1695 943 202 11 87 chr5 145507710 145507976 -7029283 + MYSERV16_I-int LTR ERVK 524 769 -1557 2 1695 193 292 43 33 chr5 145508096 145508188 -7029071 + L2a LINE L2 3100 3192 -234 2 1695 720 155 57 63 chr5 145508401 145508559 -7028700 + RLTR11A2 LTR ERVK 10 166 -361 3 1695 1166 184 14 19 chr5 145508615 145508831 -7028428 + B3 SINE B2 2 216 0 3 1695 21 36 0 0 chr5 145508833 145508861 -7028398 + AT_rich Low_complexity Low_complexity 1 28 0 3 1695 201 74 0 0 chr5 145508889 145508916 -7028343 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 1695 329 161 0 0 chr5 145509161 145509217 -7028042 - URR1B DNA MER1_type 0 225 170 3 1695 307 167 0 0 chr5 145509212 145509260 -7027999 - URR1B DNA MER1_type -177 48 1 3 1695 1260 253 19 134 chr5 145509864 145510334 -7026925 + MTD LTR MaLR 4 419 0 3 1695 620 295 18 6 chr5 145510348 145510515 -7026744 + B4 SINE B4 52 220 -72 3 1695 467 189 11 0 chr5 145510524 145510614 -7026645 + PB1D9 SINE Alu 1 91 -29 3 1695 272 337 148 22 chr5 145510614 145510706 -7026553 + B4 SINE B4 86 290 -2 3 1695 301 136 0 29 chr5 145510773 145510841 -7026418 + (CATA)n Simple_repeat Simple_repeat 1 66 0 3 1695 1776 163 29 43 chr5 145511095 145511545 -7025714 + RMER17C LTR ERVK 16 439 -519 4 1695 381 137 10 184 chr5 145511952 145512000 -7025259 + PB1D10 SINE Alu 36 82 -35 4 1695 1238 81 31 31 chr5 145512000 145512191 -7025068 + B2_Mm2 SINE B2 2 192 -3 4 1695 381 137 10 184 chr5 145512191 145512240 -7025019 + PB1D10 SINE Alu 83 116 -1 4 1695 399 271 52 104 chr5 145512335 145512348 -7024911 - ID_B1 SINE B4 -1 223 211 4 1695 1254 34 7 0 chr5 145512348 145512495 -7024764 - B1_Mus1 SINE Alu 0 148 1 4 1695 399 271 52 104 chr5 145512495 145512645 -7024614 - ID_B1 SINE B4 -14 210 70 4 1695 569 264 8 30 chr5 145512645 145512778 -7024481 + B3A SINE B2 2 131 -67 4 1695 333 309 40 60 chr5 145512786 145512886 -7024373 + RSINE1 SINE B4 2 99 -66 4 1695 277 237 34 0 chr5 145512962 145513021 -7024238 + B1_Mur2 SINE Alu 73 133 -16 4 1695 597 94 0 0 chr5 145513059 145513144 -7024115 + (GA)n Simple_repeat Simple_repeat 2 86 0 4 1695 483 257 0 9 chr5 145513621 145513731 -7023528 + ID_B1 SINE B4 116 224 0 4 1695 274 250 26 111 chr5 145513637 145513754 -7023505 - YREP_Mm Unknown Unknown -1546 266 160 5 1695 213 270 63 0 chr5 145513869 145513932 -7023327 + ID4 SINE ID 1 67 -16 5 1695 513 0 0 0 chr5 145513933 145513990 -7023269 + (CA)n Simple_repeat Simple_repeat 2 58 0 5 1695 299 229 559 0 chr5 145514001 145514103 -7023156 + B3A SINE B2 2 160 -38 5 1695 738 273 0 57 chr5 145514241 145514416 -7022843 + RSINE1 SINE B4 1 165 0 5 1695 467 239 0 64 chr5 145514492 145514617 -7022642 + PB1D10 SINE Alu 1 117 0 5 1695 941 136 0 20 chr5 145514629 145514780 -7022479 + B1_Mur4 SINE Alu 2 150 0 5 1695 378 296 81 76 chr5 145514780 145514791 -7022468 + B4A SINE B4 148 249 -43 5 1695 399 236 45 0 chr5 145514929 145515018 -7022241 - B3A SINE B2 -104 94 2 5 1695 751 222 106 20 chr5 145515029 145515227 -7022032 - B3 SINE B2 0 216 2 5 1695 252 303 87 56 chr5 145515259 145515306 -7021953 - B3 SINE B2 0 216 15 6 1695 652 250 40 34 chr5 145515306 145515455 -7021804 - RSINE1 SINE B4 0 165 16 6 1695 776 242 181 25 chr5 145515586 145515657 -7021602 + B4 SINE B4 7 77 -215 6 1695 246 32 0 0 chr5 145515657 145515688 -7021571 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 6 1695 776 242 181 25 chr5 145515688 145515853 -7021406 + B4 SINE B4 78 280 -12 6 1695 339 25 0 0 chr5 145515887 145515927 -7021332 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1695 717 289 14 29 chr5 145516637 145516847 -7020412 + ID_B1 SINE B4 2 208 -16 6 1695 222 118 0 0 chr5 145516850 145516884 -7020375 + (TTG)n Simple_repeat Simple_repeat 3 36 0 6 1695 198 193 0 0 chr5 145516902 145516959 -7020300 + A-rich Low_complexity Low_complexity 1 57 0 6 1695 605 259 46 0 chr5 145517239 145517370 -7019889 + B1_Mur1 SINE Alu 13 149 0 6 1695 1170 62 0 14 chr5 145517376 145517524 -7019735 + B1_Mus2 SINE Alu 2 147 0 6 1695 751 263 10 35 chr5 145517823 145517919 -7019340 + B4A SINE B4 1 96 -196 7 1695 938 108 6 86 chr5 145517919 145518081 -7019178 + B1_Mur4 SINE Alu 2 150 0 7 1695 751 263 10 35 chr5 145518081 145518181 -7019078 + B4A SINE B4 97 192 -100 7 1695 283 298 37 46 chr5 145518187 145518296 -7018963 - Charlie5 DNA MER1_type -2514 110 3 7 1695 250 241 0 0 chr5 145518299 145518353 -7018906 + B4A SINE B4 224 277 -15 7 1695 188 265 43 29 chr5 145518518 145518588 -7018671 - L2c LINE L2 -43 3344 3274 7 1695 476 136 32 74 chr5 145518849 145518944 -7018315 - B1_Mur2 SINE Alu 0 149 59 7 1695 471 208 47 70 chr5 145518941 145519070 -7018189 + MTEb LTR MaLR 224 349 -30 7 1695 324 0 0 0 chr5 145519087 145519123 -7018136 + (TG)n Simple_repeat Simple_repeat 2 37 0 7 1695 767 289 3 44 chr5 145519652 145519874 -7017385 + B3A SINE B2 2 216 0 7 1695 620 239 34 27 chr5 145519905 145520051 -7017208 + B1_Mur1 SINE Alu 3 149 0 7 1695 802 207 92 43 chr5 145520100 145520307 -7016952 + ID_B1 SINE B4 1 217 -7 7 1695 380 149 11 8 chr5 145520798 145520866 -7016393 - B1_Mus1 SINE Alu -34 86 19 8 1695 567 158 9 47 chr5 145520860 145520966 -7016293 + ID_B1 SINE B4 123 224 0 8 1695 245 136 176 29 chr5 145520991 145521059 -7016200 + B1F1 SINE Alu 10 87 -62 8 1695 521 242 35 46 chr5 145521052 145521088 -7016171 + ID_B1 SINE B4 54 224 0 8 1695 791 169 7 7 chr5 145521088 145521225 -7016034 + B1_Mus1 SINE Alu 11 147 -1 8 1695 326 158 0 50 chr5 145521306 145521366 -7015893 + B1_Mm SINE Alu 90 146 -1 8 1695 219 159 0 22 chr5 145521481 145521526 -7015733 + G-rich Low_complexity Low_complexity 1 44 0 8 1695 26 0 0 0 chr5 145521604 145521630 -7015629 + AT_rich Low_complexity Low_complexity 1 26 0 8 1695 180 269 75 131 chr5 145521824 145521931 -7015328 + L3 LINE CR1 3040 3140 -1349 8 1695 723 276 36 18 chr5 145522642 145522863 -7014396 - B4A SINE B4 -66 226 2 8 1695 252 210 14 29 chr5 145523003 145523076 -7014183 - B1_Mm SINE Alu 0 149 85 9 1695 545 271 55 55 chr5 145523577 145523741 -7013518 - RSINE1 SINE B4 0 165 2 9 1695 647 108 100 28 chr5 145524028 145524152 -7013107 - B2_Mm2 SINE B2 -10 185 53 9 1695 362 256 13 0 chr5 145524132 145524210 -7013049 - B3 SINE B2 -48 168 90 9 1695 892 163 43 19 chr5 145524450 145524637 -7012622 + B3 SINE B2 1 195 0 9 1695 482 248 45 27 chr5 145524663 145524775 -7012484 + RSINE1 SINE B4 1 114 -51 9 1695 774 225 0 34 chr5 145524841 145524988 -7012271 + B1_Mus2 SINE Alu 1 142 -5 9 1695 1082 50 0 7 chr5 145525032 145525174 -7012085 + (TTC)n Simple_repeat Simple_repeat 2 142 0 9 1695 1172 56 7 0 chr5 145525174 145525317 -7011942 - B1_Mus2 SINE Alu -3 144 1 9 1695 514 152 103 19 chr5 145525503 145525610 -7011649 - Lx4B LINE L1 -77 6981 6866 9 1695 213 65 0 0 chr5 145525662 145525693 -7011566 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1 1695 1365 51 0 152 chr5 145525733 145525963 -7011296 + B2_Mm2 SINE B2 1 195 0 1 1695 875 130 7 37 chr5 145526451 145526587 -7010672 - B1_Mur3 SINE Alu -15 134 3 1 1695 357 235 201 0 chr5 145526840 145526945 -7010314 - B1_Mur2 SINE Alu -21 128 2 1 1695 229 288 37 12 chr5 145526998 145527079 -7010180 - RSINE1 SINE B4 -8 157 75 1 1695 263 273 252 0 chr5 145527162 145527261 -7009998 - ID_B1 SINE B4 -93 131 8 1 1695 21 0 0 0 chr5 145527307 145527328 -7009931 + AT_rich Low_complexity Low_complexity 1 21 0 1 1695 245 51 26 0 chr5 145527875 145527914 -7009345 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 1 1695 1204 50 0 0 chr5 145527915 145528056 -7009203 - B1_Mus2 SINE Alu -6 141 1 1 1695 260 167 0 0 chr5 145528288 145528330 -7008929 - RLTR25A LTR ERVK -537 566 525 1 1695 271 91 0 0 chr5 145528295 145528339 -7008920 - B1_Mus2 SINE Alu -64 83 40 1 1695 207 0 0 0 chr5 145528342 145528365 -7008894 + (C)n Simple_repeat Simple_repeat 1 23 0 1 1695 285 309 0 9 chr5 145528415 145528493 -7008766 + ID4 SINE ID 18 92 -60 1 1695 375 23 0 0 chr5 145528523 145528567 -7008692 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1695 217 304 0 0 chr5 145528567 145528613 -7008646 + ID SINE ID 32 77 -147 1 1695 519 17 0 0 chr5 145528662 145528722 -7008537 + (CA)n Simple_repeat Simple_repeat 1 60 0 1 1695 396 276 104 30 chr5 145529953 145530155 -7007104 + ID_B1 SINE B4 8 224 0 1 1695 431 176 147 42 chr5 145530354 145530449 -7006810 - PB1D9 SINE Alu -15 105 1 1 1695 519 248 44 0 chr5 145530471 145530608 -7006651 - RSINE1 SINE B4 -8 157 15 1 1695 839 191 0 13 chr5 145530661 145530810 -7006449 + RSINE1 SINE B4 2 148 -17 1 1695 382 245 255 0 chr5 145530992 145531098 -7006161 - B1_Mur1 SINE Alu -16 133 1 1 1695 445 292 53 15 chr5 145531389 145531521 -7005738 - ID_B1 SINE B4 -86 138 2 1 1695 245 342 0 0 chr5 145531711 145531784 -7005475 + RSINE1 SINE B4 4 76 -89 1 1695 351 329 57 32 chr5 145532802 145532959 -7004300 - RSINE1 SINE B4 -4 161 1 1 1695 3522 28 2 0 chr5 145533166 145533561 -7003698 + MTA_Mm LTR MaLR 1 396 0 1 1695 337 262 11 35 chr5 145533592 145533679 -7003580 + B1F1 SINE Alu 13 97 -52 1 1695 757 229 23 82 chr5 145534205 145534424 -7002835 - B3 SINE B2 -4 212 7 1 1695 1584 48 0 0 chr5 145534496 145534685 -7002574 - B2_Mm1a SINE B2 -4 189 1 1 1695 347 244 156 0 chr5 145534966 145535101 -7002158 - RSINE1 SINE B4 -6 159 4 1 1695 325 324 81 7 chr5 145536125 145536193 -7001066 - B4A SINE B4 -47 245 86 1 1695 467 243 11 0 chr5 145536147 145536262 -7000997 - B1_Mur1 SINE Alu -20 130 13 1 1695 335 116 0 148 chr5 145536193 145536274 -7000985 - MT2B LTR ERVL -364 237 169 1 1695 289 295 76 0 chr5 145536352 145536457 -7000802 - PB1D10 SINE Alu 0 117 5 1 1695 409 286 71 0 chr5 145536579 145536691 -7000568 - RSINE1 SINE B4 -44 121 2 1 1695 225 0 0 0 chr5 145536787 145536812 -7000447 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1 1695 579 250 0 0 chr5 145536814 145536926 -7000333 - B1_Mur3 SINE Alu -12 137 26 1 1695 226 261 99 0 chr5 145537025 145537136 -7000123 - L1MA6 LINE L1 -307 5993 5872 1 1695 595 223 0 16 chr5 145537151 145537314 -6999945 - L1MA6 LINE L1 -466 5834 5677 1 1695 301 216 0 0 chr5 145537319 145537370 -6999889 - ID4 SINE ID -6 77 27 1 1695 506 248 45 73 chr5 145537388 145537566 -6999693 - B3A SINE B2 -17 181 9 1 1695 462 270 152 33 chr5 145537681 145537865 -6999394 + B3 SINE B2 1 206 -10 1 1695 623 268 0 32 chr5 145538307 145538465 -6998794 + RSINE1 SINE B4 3 155 -10 1 1695 501 235 110 39 chr5 145538494 145538649 -6998610 + B3A SINE B2 3 168 -30 1 1695 756 195 0 43 chr5 145539043 145539212 -6998047 - B1_Mur1 SINE Alu 0 315 1 1 1695 610 206 167 0 chr5 145539222 145539348 -6997911 - B1_Mur1 SINE Alu 0 149 3 1 1695 189 284 108 33 chr5 145539440 145539560 -6997699 + MIRb SINE MIR 22 150 -118 1 1695 425 191 22 22 chr5 145540110 145540201 -6997058 + PB1D9 SINE Alu 28 118 -2 1 1695 616 229 155 26 chr5 145540214 145540407 -6996852 + ID_B1 SINE B4 2 219 -5 1 1695 492 219 67 0 chr5 145540640 145540745 -6996514 - B1_Mur2 SINE Alu 0 149 38 1 1695 377 279 28 107 chr5 145540966 145540988 -6996271 - RSINE1 SINE B4 0 165 146 1 1695 1194 94 0 0 chr5 145540988 145541158 -6996101 + (TG)n Simple_repeat Simple_repeat 1 170 0 1 1695 377 279 28 107 chr5 145541158 145541312 -6995947 - RSINE1 SINE B4 -20 145 3 1 1695 335 295 130 15 chr5 145541723 145541854 -6995405 - B3 SINE B2 -68 148 3 1 1695 288 200 0 0 chr5 145541920 145541980 -6995279 + CT-rich Low_complexity Low_complexity 3 62 0 1 1695 543 172 259 0 chr5 145541987 145542103 -6995156 - B1_Mur3 SINE Alu -1 148 3 1 1695 392 300 12 107 chr5 145542330 145542498 -6994761 - B3A SINE B2 0 198 47 1 1695 469 211 105 38 chr5 145543791 145543924 -6993335 + ID_B1 SINE B4 80 221 -3 1 1695 532 203 96 15 chr5 145544221 145544356 -6992903 + B1_Mur1 SINE Alu 2 147 -2 1 1695 312 343 67 78 chr5 145544316 145544496 -6992763 + ID_B1 SINE B4 32 209 -15 1 1695 458 230 7 0 chr5 145544412 145544507 -6992752 + B1F SINE Alu 51 134 -15 1 1695 469 252 9 18 chr5 145544510 145544619 -6992640 + PB1D9 SINE Alu 5 112 -8 1 1695 382 231 219 22 chr5 145545430 145545567 -6991692 - RSINE1 SINE B4 0 165 2 1 1695 192 125 0 0 chr5 145545970 145546002 -6991257 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1695 574 192 58 64 chr5 145546015 145546171 -6991088 - B3A SINE B2 -39 159 5 1 1695 472 211 18 35 chr5 145546517 145546630 -6990629 - B4A SINE B4 -3 289 179 1 1695 251 363 78 0 chr5 145546645 145546747 -6990512 - PB1D10 SINE Alu -5 112 3 1 1695 281 299 71 99 chr5 145546850 145546868 -6990391 - B2_Mm2 SINE B2 -15 180 164 1 1695 582 193 168 0 chr5 145546868 145546987 -6990272 - B1_Mur1 SINE Alu -9 140 2 1 1695 281 299 71 99 chr5 145546987 145547022 -6990237 - B2_Mm2 SINE B2 -32 163 137 1 1695 315 0 0 0 chr5 145547022 145547057 -6990202 + (TG)n Simple_repeat Simple_repeat 1 35 0 1 1695 281 299 71 99 chr5 145547057 145547184 -6990075 - B2_Mm2 SINE B2 -59 136 4 1 1695 456 72 0 0 chr5 145547664 145547733 -6989526 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 1695 809 234 0 35 chr5 145547758 145547931 -6989328 - B3 SINE B2 0 216 50 1 1695 396 0 0 0 chr5 145547960 145548004 -6989255 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1695 600 160 27 36 chr5 145548008 145548118 -6989141 - PB1D9 SINE Alu 0 120 12 1 1695 22 35 0 0 chr5 145548768 145548797 -6988462 + AT_rich Low_complexity Low_complexity 1 29 0 1 1695 1269 28 7 0 chr5 145549135 145549280 -6987979 + B1_Mus2 SINE Alu 1 146 -1 1 1695 192 40 0 0 chr5 145549281 145549306 -6987953 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1695 370 111 63 0 chr5 145549388 145549451 -6987808 - PB1D9 SINE Alu -20 100 34 1 1695 1016 289 126 6 chr5 145549715 145550056 -6987203 + MTD LTR MaLR 37 418 -1 1 1695 338 250 38 151 chr5 145550869 145550908 -6986351 - B2_Mm2 SINE B2 -2 193 167 1 1695 1165 70 7 0 chr5 145550908 145551051 -6986208 - B1_Mm SINE Alu -2 145 2 1 1695 451 234 62 58 chr5 145551051 145551223 -6986036 - B3 SINE B2 -29 166 6 1 1695 840 235 59 15 chr5 145551226 145551429 -6985830 - B4 SINE B4 -66 226 15 1 1695 1269 58 99 0 chr5 145551452 145551624 -6985635 - B2_Mm1t SINE B2 -2 191 3 1 1695 195 213 0 0 chr5 145551815 145551890 -6985369 + (CCCCAG)n Simple_repeat Simple_repeat 6 80 0 1 1695 1284 121 16 0 chr5 145552350 145552540 -6984719 - B2_Mm1t SINE B2 0 193 1 1 1695 318 257 54 0 chr5 145552554 145552628 -6984631 - ID_B1 SINE B4 -108 116 39 1 1695 438 108 0 0 chr5 145553173 145553238 -6984021 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1695 323 236 113 31 chr5 145553238 145553341 -6983918 - RSINE1 SINE B4 -186 106 2 1 1695 366 243 0 0 chr5 145553782 145553856 -6983403 - BC1_Mm scRNA scRNA -77 75 2 1 1695 424 205 82 41 chr5 145554203 145554325 -6982934 + ID_B1 SINE B4 98 224 0 1 1695 1332 104 0 40 chr5 145554333 145554534 -6982725 + B2_Mm2 SINE B2 3 195 0 1 1695 489 263 96 101 chr5 145558693 145558892 -6978367 + B3A SINE B2 1 198 0 1 1695 1193 182 51 0 chr5 145559419 145559633 -6977626 + URR1B DNA MER1_type 1 225 0 1 1695 438 286 17 0 chr5 145559765 145559884 -6977375 - ID_B1 SINE B4 0 224 104 1 1695 527 279 0 26 chr5 145559950 145560101 -6977158 - B1_Mur3 SINE Alu 0 149 3 1 1695 366 42 0 0 chr5 145560101 145560149 -6977110 + (CA)n Simple_repeat Simple_repeat 2 49 0 1 1695 24 0 0 0 chr5 145560159 145560183 -6977076 + AT_rich Low_complexity Low_complexity 1 24 0 1 1695 293 339 16 32 chr5 145560238 145560363 -6976896 - B4 SINE B4 -166 126 4 1 1695 188 316 18 0 chr5 145560726 145560783 -6976476 - L4 LINE RTE -1721 308 251 1 1695 1165 61 0 33 chr5 145560815 145560828 -6976431 - B1_Mus1 SINE Alu 0 148 140 1 1695 351 0 0 0 chr5 145560828 145560867 -6976392 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1695 1165 61 0 33 chr5 145560867 145561006 -6976253 - B1_Mus1 SINE Alu -9 139 1 1 1695 622 260 86 30 chr5 145561027 145561169 -6976090 - B3 SINE B2 -5 211 57 1 1695 490 266 136 0 chr5 145561169 145561353 -6975906 + B3 SINE B2 4 212 -4 1 1695 622 260 86 30 chr5 145561353 145561408 -6975851 - B3 SINE B2 -160 56 3 1 1695 497 224 67 40 chr5 145562031 145562180 -6975079 + RSINE1 SINE B4 13 165 0 2 1695 477 285 24 48 chr5 145562925 145563091 -6974168 - RSINE1 SINE B4 0 165 4 2 1695 531 308 6 86 chr5 145563403 145563577 -6973682 + RSINE1 SINE B4 2 161 -4 2 1695 547 208 104 0 chr5 145564505 145564630 -6972629 - RSINE1 SINE B4 -25 140 3 2 1695 751 196 65 0 chr5 145566260 145566398 -6970861 - B1_Mus2 SINE Alu 0 147 1 2 1695 512 210 51 2 chr5 145567189 145567323 -6969936 + B1_Mur1 SINE Alu 11 149 0 2 1695 1104 105 17 6 chr5 145568722 145568894 -6968365 + B2_Mm2 SINE B2 20 193 -2 2 1695 387 252 60 10 chr5 145569574 145569674 -6967585 + RSINE1 SINE B4 44 148 -17 2 1695 876 246 220 7 chr5 145570219 145570501 -6966758 - MTD LTR MaLR -18 401 60 2 1695 483 90 0 0 chr5 145571664 145571742 -6965517 + (CA)n Simple_repeat Simple_repeat 2 79 0 2 1695 192 121 0 29 chr5 145571810 145571844 -6965415 + MIRc SINE MIR 132 164 -104 2 1695 21 36 0 0 chr5 145572972 145573000 -6964259 + AT_rich Low_complexity Low_complexity 1 28 0 2 1695 26 0 0 0 chr5 145573267 145573293 -6963966 + AT_rich Low_complexity Low_complexity 1 26 0 2 1695 604 306 148 24 chr5 145573593 145573891 -6963368 - Lx8 LINE L1 -317 7156 6822 2 1695 290 246 0 47 chr5 145573979 145574043 -6963216 - RSINE1 SINE B4 -1 164 104 2 1695 271 303 19 48 chr5 145574042 145574146 -6963113 - B1F1 SINE Alu -48 101 1 2 1695 303 273 264 8 chr5 145574699 145574828 -6962431 - RSINE1 SINE B4 0 165 4 2 1695 525 110 12 0 chr5 145574918 145575000 -6962259 - B2_Mm2 SINE B2 -111 84 2 2 1695 271 221 143 9 chr5 145575012 145575117 -6962142 - PB1D9 SINE Alu 0 120 2 2 1695 510 283 64 42 chr5 145575844 145576123 -6961136 + B4A SINE B4 6 286 -6 2 1695 573 42 0 0 chr5 145576689 145576761 -6960498 + (TTCG)n Simple_repeat Simple_repeat 2 73 0 2 1695 432 267 38 0 chr5 145577025 145577130 -6960129 - RSINE1 SINE B4 -30 135 27 2 1695 244 291 0 127 chr5 145578337 145578455 -6958804 - B3 SINE B2 -13 203 101 2 1695 327 319 63 14 chr5 145579428 145579485 -6957774 + ZP3AR Satellite Satellite 10 69 -143 2 1695 216 0 0 0 chr5 145579485 145579509 -6957750 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 1695 327 319 63 14 chr5 145579509 145579582 -6957677 + ZP3AR Satellite Satellite 70 147 -65 2 1695 303 227 107 0 chr5 145579582 145579657 -6957602 + ID4 SINE ID 1 83 0 2 1695 327 319 63 14 chr5 145579657 145579668 -6957591 + ZP3AR Satellite Satellite 148 158 -54 2 1695 816 57 0 0 chr5 145581555 145581661 -6955598 + (TTTTC)n Simple_repeat Simple_repeat 4 109 0 2 1695 945 45 0 83 chr5 145581662 145581807 -6955452 - B1_Mus1 SINE Alu -6 142 10 2 1695 432 0 0 0 chr5 145582962 145583010 -6954249 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 2 1695 1126 70 7 7 chr5 145583010 145583147 -6954112 - B1_Mus2 SINE Alu -9 138 1 2 1695 566 220 8 33 chr5 145583147 145583269 -6953990 - PB1D9 SINE Alu 0 120 2 2 1695 665 123 192 24 chr5 145584186 145584311 -6952948 - B1_Mus2 SINE Alu 0 147 2 2 1695 267 289 161 15 chr5 145584315 145584445 -6952814 - B3A SINE B2 -8 190 42 2 1695 307 311 0 0 chr5 145585208 145585282 -6951977 - B4 SINE B4 -215 77 4 2 1695 712 262 38 16 chr5 145586981 145587023 -6950236 - B3A SINE B2 0 198 154 2 1695 354 45 0 0 chr5 145587023 145587067 -6950192 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1695 821 199 1 0 chr5 145587067 145587210 -6950049 - B3 SINE B2 -45 153 9 2 1695 970 190 156 4 chr5 145587687 145587930 -6949329 - ORR1D1 LTR MaLR -4 370 91 2 1695 222 37 0 0 chr5 145587930 145587957 -6949302 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2 1695 1185 75 0 0 chr5 145587957 145588116 -6949143 - B2_Mm2 SINE B2 -36 159 1 2 1695 353 219 14 14 chr5 145589941 145590015 -6947244 + ID SINE ID 1 74 -150 2 1695 3803 155 78 8 chr5 145590487 145591191 -6946068 - RMER6A LTR ERVK -3 753 1 2 1695 228 67 0 0 chr5 145591333 145591363 -6945896 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2 1695 1433 70 38 0 chr5 145592203 145592389 -6944870 - B2_Mm2 SINE B2 -1 194 2 2 1695 1562 172 40 3 chr5 145592639 145592937 -6944322 - ORR1B1 LTR MaLR -4 390 82 2 1695 473 265 25 17 chr5 145593600 145593719 -6943540 - B1F SINE Alu 0 149 30 2 1695 446 296 54 20 chr5 145593602 145593750 -6943509 - ID_B1 SINE B4 0 224 72 2 1695 1155 70 7 0 chr5 145595203 145595345 -6941914 + B1_Mus1 SINE Alu 1 143 -5 2 1695 207 0 0 0 chr5 145595350 145595373 -6941886 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2 1695 225 96 135 0 chr5 145595498 145595550 -6941709 - B2_Mm2 SINE B2 0 195 137 2 1695 311 132 0 50 chr5 145595539 145595607 -6941652 - B2_Mm2 SINE B2 -107 109 47 2 1695 1089 125 60 0 chr5 145595654 145595822 -6941437 - B2_Mm1t SINE B2 -14 179 2 2 1695 679 162 0 0 chr5 145595826 145595937 -6941322 - B1_Mur3 SINE Alu -1 148 38 2 1695 852 267 47 31 chr5 145595948 145596203 -6941056 - RCHARR1 DNA MER1_type -478 496 238 2 1695 558 182 30 0 chr5 145596377 145596476 -6940783 + PB1D9 SINE Alu 5 106 -14 2 1695 252 86 0 0 chr5 145596673 145596708 -6940551 + (CAGG)n Simple_repeat Simple_repeat 3 37 0 2 1695 351 0 0 0 chr5 145597074 145597113 -6940146 + (TG)n Simple_repeat Simple_repeat 2 40 0 2 1695 415 236 199 15 chr5 145597115 145597259 -6940000 - B3A SINE B2 -18 175 16 2 1695 1298 183 4 26 chr5 145597259 145597489 -6939770 + URR1B DNA MER1_type 1 225 0 2 1695 219 103 0 0 chr5 145599108 145599147 -6938112 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1695 680 143 1 0 chr5 145599465 145599590 -6937669 + B2_Mm2 SINE B2 2 127 -89 2 1695 451 190 150 33 chr5 145599640 145599760 -6937499 - B1_Mus2 SINE Alu 0 147 14 2 1695 364 241 259 0 chr5 145599774 145599890 -6937369 - B1_Mur1 SINE Alu -1 148 3 2 1695 374 301 0 54 chr5 145600091 145600221 -6937038 - RSINE1 SINE B4 -8 157 35 2 1695 590 271 65 22 chr5 145600856 145601041 -6936218 - ID_B1 SINE B4 0 224 32 2 1695 810 172 81 136 chr5 145602622 145602857 -6934402 + URR1A DNA MER1_type 5 226 0 2 1695 378 301 73 8 chr5 145603220 145603344 -6933915 - B1F SINE Alu -8 141 10 2 1695 445 285 23 3 chr5 145606682 145606821 -6930438 + ID_B1 SINE B4 12 154 -138 2 1695 211 295 0 16 chr5 145606921 145606983 -6930276 + (TGG)n Simple_repeat Simple_repeat 3 63 0 2 1695 192 77 0 0 chr5 145607533 145607559 -6929700 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 2 1695 1229 48 0 13 chr5 145607577 145607726 -6929533 - B1_Mus2 SINE Alu 0 147 1 2 1695 1360 97 0 16 chr5 145607761 145607949 -6929310 - B2_Mm2 SINE B2 -7 188 4 2 1695 567 148 185 34 chr5 145607975 145608094 -6929165 + B1_Mur2 SINE Alu 2 138 -11 2 1695 995 224 129 55 chr5 145609482 145609861 -6927398 - RMER13A LTR ERVK -345 515 109 2 1695 417 197 13 0 chr5 145610297 145610373 -6926886 - ID4_ SINE ID -6 77 1 2 1695 234 278 113 53 chr5 145611211 145611344 -6925915 + B1F1 SINE Alu 9 149 0 2 1695 210 229 21 0 chr5 145611346 145611394 -6925865 + RSINE1 SINE B4 2 50 -115 2 1695 1297 87 6 0 chr5 145611507 145611666 -6925593 + B2_Mm1a SINE B2 1 160 -33 2 1695 201 74 0 0 chr5 145611666 145611693 -6925566 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2 1695 1297 87 6 0 chr5 145611693 145611706 -6925553 + B2_Mm1a SINE B2 161 173 -20 2 1695 393 282 73 2 chr5 145612580 145612609 -6924650 - B4 SINE B4 -59 233 174 2 1695 537 105 22 34 chr5 145612609 145612698 -6924561 - B1_Mur1 SINE Alu -40 109 22 2 1695 393 282 73 2 chr5 145612698 145612758 -6924501 - B4 SINE B4 -59 173 42 2 1695 666 178 157 31 chr5 145612774 145612965 -6924294 + B3 SINE B2 1 215 -1 2 1695 935 199 122 25 chr5 145612965 145613161 -6924098 + B3 SINE B2 1 215 -1 2 1695 521 168 168 0 chr5 145613209 145613310 -6923949 - PB1D9 SINE Alu 0 120 3 2 1695 229 297 48 115 chr5 145615769 145615978 -6921281 - L1M4 LINE L1 -380 5794 5600 2 1695 216 0 0 0 chr5 145616059 145616083 -6921176 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1695 913 215 56 0 chr5 145616256 145616451 -6920808 - B3 SINE B2 -10 206 1 2 1695 263 308 55 74 chr5 145616495 145616599 -6920660 - L1M4 LINE L1 -5593 949 851 2 1695 450 36 0 0 chr5 145616599 145616655 -6920604 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1695 269 267 67 0 chr5 145616656 145616731 -6920528 - ID4_ SINE ID -2 81 2 2 1695 263 308 55 74 chr5 145616731 145616880 -6920379 - L1M4 LINE L1 -5692 850 699 2 1695 328 319 48 24 chr5 145616894 145617061 -6920198 - L1M4 LINE L1 -5911 631 461 2 1695 329 361 60 6 chr5 145617185 145617352 -6919907 - L1M4 LINE L1 -6296 246 71 2 1695 492 232 31 31 chr5 145618739 145618868 -6918391 + B3 SINE B2 87 215 -1 2 1695 26 30 0 0 chr5 145620611 145620644 -6916615 + AT_rich Low_complexity Low_complexity 1 33 0 2 1696 188 387 27 0 chr5 145621405 145621516 -6915743 - MIRc SINE MIR -118 150 37 2 1696 348 308 47 65 chr5 145621931 145622101 -6915158 - ID_B1 SINE B4 -33 191 25 2 1696 430 248 19 29 chr5 145622128 145622232 -6915027 - B1F SINE Alu -1 148 46 2 1696 270 0 0 0 chr5 145622376 145622406 -6914853 + (TG)n Simple_repeat Simple_repeat 2 31 0 2 1696 2381 144 68 57 chr5 145622432 145622902 -6914357 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1696 4349 59 67 21 chr5 145622902 145623528 -6913731 + IAPEz-int LTR ERVK 8 662 -5819 2 1696 435 82 0 32 chr5 145623528 145623591 -6913668 + IAPEz-int LTR ERVK 1359 1419 -5062 2 1696 1739 119 4 4 chr5 145623580 145623842 -6913417 + IAPEz-int LTR ERVK 2236 2497 -5183 2 1696 900 80 24 0 chr5 145623837 145623962 -6913297 + IAPEz-int LTR ERVK 4783 4910 -2770 2 1696 20241 16 2 0 chr5 145623964 145626318 -6910941 + IAPEz-int LTR ERVK 4123 6481 0 2 1696 2393 142 68 59 chr5 145626318 145626789 -6910470 + IAPLTR2_Mm LTR ERVK 1 475 0 2 1696 345 279 88 26 chr5 145626960 145627074 -6910185 - RSINE1 SINE B4 -31 134 14 2 1696 244 351 0 0 chr5 145627092 145627169 -6910090 - L1M3d LINE L1 -3392 2990 2914 2 1696 384 284 0 0 chr5 145627171 145627252 -6910007 + ID4 SINE ID 2 82 -1 2 1696 432 0 0 0 chr5 145627257 145627305 -6909954 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 1696 276 356 93 28 chr5 145627587 145627876 -6909383 - L1M3d LINE L1 -3998 2386 2079 2 1696 450 260 48 13 chr5 145627911 145628082 -6909177 + B3A SINE B2 1 174 -21 3 1696 1046 176 31 36 chr5 145628482 145628724 -6908535 - RMER15 LTR ERVL -353 222 1 3 1696 237 230 76 46 chr5 145628733 145628867 -6908392 - B3A SINE B2 -10 206 1 3 1696 375 305 31 68 chr5 145628990 145629266 -6907993 - L1M3d LINE L1 -4619 1694 1437 2 1696 432 0 0 0 chr5 145629335 145629383 -6907876 + (CA)n Simple_repeat Simple_repeat 2 49 0 3 1696 555 247 117 33 chr5 145629416 145629596 -6907663 - B3A SINE B2 0 198 4 3 1696 532 235 149 46 chr5 145629657 145629831 -6907428 + B3A SINE B2 2 193 -5 3 1696 671 248 168 32 chr5 145630061 145630311 -6906948 - B4A SINE B4 -6 286 3 3 1696 327 276 95 22 chr5 145630655 145630792 -6906467 - RSINE1 SINE B4 -15 150 4 3 1696 482 332 178 12 chr5 145631000 145631247 -6906012 - B4 SINE B4 -2 290 3 3 1696 887 238 64 5 chr5 145631322 145631355 -6905904 - B3 SINE B2 -1 215 183 3 1696 192 77 0 0 chr5 145631355 145631381 -6905878 + (TATG)n Simple_repeat Simple_repeat 1 26 0 3 1696 887 238 64 5 chr5 145631381 145631550 -6905709 - B3 SINE B2 -34 182 1 3 1696 347 247 40 40 chr5 145632149 145632250 -6905009 + RSINE1 SINE B4 65 165 0 3 1696 730 212 193 11 chr5 145632282 145632463 -6904796 + B3 SINE B2 3 216 0 3 1696 633 273 72 77 chr5 145632489 145632711 -6904548 + ID_B1 SINE B4 2 222 -2 3 1696 459 35 0 0 chr5 145632740 145632797 -6904462 + (TATG)n Simple_repeat Simple_repeat 2 58 0 3 1696 598 259 49 7 chr5 145632813 145632957 -6904302 - B3A SINE B2 -47 151 2 3 1696 345 280 43 0 chr5 145633522 145633615 -6903644 - B4A SINE B4 -5 287 191 3 1696 23 0 0 0 chr5 145633644 145633667 -6903592 + GC_rich Low_complexity Low_complexity 1 23 0 3 1696 239 292 14 0 chr5 145633689 145633761 -6903498 + (TG)n Simple_repeat Simple_repeat 2 74 0 3 1696 469 312 28 50 chr5 145633810 145633989 -6903270 - B4A SINE B4 -115 177 3 3 1696 252 293 150 10 chr5 145634103 145634203 -6903056 - B3 SINE B2 -13 203 90 3 1696 414 261 49 28 chr5 145634307 145634449 -6902810 - B1F SINE Alu 0 149 5 3 1696 261 291 59 76 chr5 145634925 145635044 -6902215 - RLTR25B LTR ERVK -470 558 442 3 1696 477 214 86 16 chr5 145634939 145635067 -6902192 - B1_Mur1 SINE Alu -2 147 11 3 1696 377 281 52 46 chr5 145635310 145635463 -6901796 - RSINE1 SINE B4 -9 156 3 3 1696 448 274 17 0 chr5 145635474 145635591 -6901668 - ID_B1 SINE B4 0 224 106 3 1696 907 54 124 0 chr5 145636670 145636799 -6900460 - B1_Mus1 SINE Alu -2 146 2 3 1696 188 34 0 33 chr5 145637063 145637093 -6900166 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 3 1696 774 64 266 0 chr5 145637106 145637215 -6900044 - B1_Mus2 SINE Alu -9 138 1 3 1696 200 163 0 23 chr5 145637323 145637367 -6899892 + GA-rich Low_complexity Low_complexity 2 44 0 3 1696 437 263 223 0 chr5 145643713 145643888 -6893371 - B3 SINE B2 -1 215 2 3 1696 237 250 0 0 chr5 145643894 145643946 -6893313 - ID_B1 SINE B4 -2 222 171 3 1696 331 247 82 0 chr5 145644028 145644125 -6893134 - ID_B1 SINE B4 -30 194 90 3 1696 240 304 37 25 chr5 145645807 145645888 -6891371 - PB1D10 SINE Alu -31 86 5 3 1696 234 197 38 101 chr5 145645835 145645914 -6891345 - B4A SINE B4 -147 145 72 3 1696 731 104 9 0 chr5 145646115 145646230 -6891029 + (TG)n Simple_repeat Simple_repeat 1 116 0 3 1696 451 223 89 0 chr5 145646244 145646356 -6890903 - B4A SINE B4 -48 244 123 3 1696 1033 75 7 0 chr5 145646426 145646573 -6890686 + B2_Mm2 SINE B2 28 175 -20 3 1696 600 191 69 38 chr5 145646580 145646711 -6890548 - B1_Mur2 SINE Alu -13 136 2 3 1696 235 274 40 27 chr5 145646711 145646786 -6890473 - B4A SINE B4 -196 96 21 3 1696 735 236 35 0 chr5 145647411 145647585 -6889674 - B3A SINE B2 -18 180 1 3 1696 513 0 0 0 chr5 145647600 145647657 -6889602 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 3 1696 819 147 0 56 chr5 145647658 145647802 -6889457 - B1_Mus1 SINE Alu -7 141 6 3 1696 413 198 0 131 chr5 145647704 145647826 -6889433 - MT2B LTR ERVL -344 257 152 3 1696 459 230 167 6 chr5 145648035 145648197 -6889062 - B4A SINE B4 -103 189 2 3 1696 189 0 0 0 chr5 145648329 145648350 -6888909 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 3 1696 1215 61 0 0 chr5 145648763 145648910 -6888349 + B1_Mus2 SINE Alu 1 147 0 3 1696 478 260 10 0 chr5 145649599 145649703 -6887556 + B1F SINE Alu 1 105 -44 3 1696 1189 173 25 10 chr5 145649807 145650011 -6887248 + B3 SINE B2 1 207 -9 3 1696 210 273 25 25 chr5 145650706 145650785 -6886474 - ID4 SINE ID -4 79 1 3 1696 1544 41 6 1 chr5 145650743 145651010 -6886249 - ZP3AR Satellite Satellite -21 268 1 3 1696 909 174 0 7 chr5 145651878 145652023 -6885236 - B1_Mur2 SINE Alu -5 144 1 3 1696 801 197 219 153 chr5 145652547 145653045 -6884214 + MT2A LTR ERVL 3 533 0 3 1696 473 221 217 38 chr5 145653661 145653901 -6883358 + B4A SINE B4 1 283 -9 3 1696 249 108 0 0 chr5 145653922 145653959 -6883300 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 1696 201 195 0 0 chr5 145655200 145655241 -6882018 + (CACG)n Simple_repeat Simple_repeat 1 41 0 3 1696 471 218 10 0 chr5 145655533 145655634 -6881625 - PB1D10 SINE Alu -2 115 14 3 1696 286 317 39 0 chr5 145655552 145655656 -6881603 - ID_B1 SINE B4 -48 176 69 3 1696 1553 202 117 14 chr5 145656834 145657028 -6880231 + MTD LTR MaLR 1 211 -208 3 1696 605 226 28 28 chr5 145657028 145657169 -6880090 + B1_Mur1 SINE Alu 3 143 -6 3 1696 1553 202 117 14 chr5 145657169 145657341 -6879918 + MTD LTR MaLR 212 405 -14 3 1696 22 0 0 0 chr5 145658196 145658218 -6879041 + AT_rich Low_complexity Low_complexity 1 22 0 3 1696 375 271 183 22 chr5 145658295 145658521 -6878738 + B4 SINE B4 1 262 -30 3 1696 418 253 22 0 chr5 145658554 145658645 -6878614 - PB1D10 SINE Alu -24 93 1 3 1696 280 313 0 24 chr5 145660607 145660692 -6876567 - ID4 SINE ID 0 83 1 3 1696 402 174 55 94 chr5 145660915 145661042 -6876217 + RMER15 LTR ERVL 38 159 -416 3 1696 277 276 269 6 chr5 145661042 145661224 -6876035 + RMER15 LTR ERVL 276 505 -70 3 1696 312 260 28 46 chr5 145661247 145661356 -6875903 - PB1D7 SINE Alu -12 108 2 3 1696 243 0 0 0 chr5 145663205 145663232 -6874027 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 1696 426 247 41 0 chr5 145663257 145663354 -6873905 + RSINE1 SINE B4 53 153 -12 3 1696 207 241 0 17 chr5 145663633 145663692 -6873567 + L3 LINE CR1 3726 3783 -706 3 1696 1071 109 20 0 chr5 145663956 145664103 -6873156 + B1_Mur4 SINE Alu 1 150 0 3 1696 563 187 73 0 chr5 145664145 145664268 -6872991 + RSINE1 SINE B4 3 134 -31 3 1696 445 261 35 0 chr5 145664369 145664484 -6872775 + B1F SINE Alu 14 132 -17 3 1696 258 32 0 0 chr5 145664484 145664515 -6872744 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 3 1696 266 333 75 29 chr5 145664707 145664948 -6872311 - L1MB8 LINE L1 -26 6152 5901 3 1696 807 207 30 0 chr5 145665000 145665164 -6872095 + ID_B1 SINE B4 50 218 -6 3 1696 296 331 31 24 chr5 145665050 145665177 -6872082 - YREP_Mm Unknown Unknown -1516 296 169 3 1696 558 214 22 30 chr5 145665615 145665750 -6871509 - B1_Mur1 SINE Alu -15 134 1 3 1696 711 263 22 0 chr5 145665845 145666024 -6871235 + ID_B1 SINE B4 21 203 -21 3 1696 23 33 0 0 chr5 145666029 145666059 -6871200 + AT_rich Low_complexity Low_complexity 1 30 0 3 1696 354 261 8 105 chr5 145666157 145666281 -6870978 - ID_B1 SINE B4 -5 219 108 3 1696 449 224 0 58 chr5 145666635 145666739 -6870520 - PB1D7 SINE Alu 0 120 23 3 1696 227 114 0 22 chr5 145666860 145666905 -6870354 + (TATG)n Simple_repeat Simple_repeat 4 47 0 3 1696 464 289 43 29 chr5 145667182 145667321 -6869938 - B4A SINE B4 -73 219 79 3 1696 361 242 55 0 chr5 145667325 145667416 -6869843 - B1F1 SINE Alu -52 97 2 3 1696 418 296 43 9 chr5 145668322 145668438 -6868821 + RSINE1 SINE B4 3 122 -43 3 1696 216 300 175 0 chr5 145668699 145668779 -6868480 + L2b LINE L2 3271 3390 -36 3 1696 232 259 56 0 chr5 145668885 145668939 -6868320 + L2b LINE L2 3303 3359 -16 3 1696 892 211 102 0 chr5 145669380 145669581 -6867678 - ZP3AR Satellite Satellite 0 221 1 3 1696 902 214 92 140 chr5 145669782 145670174 -6867085 + ORR1D1 LTR MaLR 2 374 0 3 1696 782 268 41 5 chr5 145670830 145671025 -6866234 + ID_B1 SINE B4 23 224 0 3 1696 1267 112 21 0 chr5 145671307 145671495 -6865764 + B2_Mm2 SINE B2 2 193 -2 3 1696 356 281 0 0 chr5 145672849 145672945 -6864314 + PB1 SINE Alu 25 120 -7 3 1696 359 201 88 112 chr5 145672957 145673113 -6864146 + B3 SINE B2 2 212 -4 3 1696 275 291 103 15 chr5 145673512 145673648 -6863611 + L1MC3 LINE L1 7362 7509 -276 3 1696 373 267 33 0 chr5 145673980 145674070 -6863189 + ID_B1 SINE B4 127 219 -5 3 1696 1190 122 5 45 chr5 145674090 145674288 -6862971 + B2_Mm2 SINE B2 4 193 -2 3 1696 709 199 13 76 chr5 145674419 145674577 -6862682 + B1_Mur1 SINE Alu 2 149 0 3 1696 314 338 102 7 chr5 145674578 145674715 -6862544 + ID_B1 SINE B4 69 218 -6 3 1696 225 270 100 96 chr5 145675884 145676175 -6861084 + B4A SINE B4 1 292 0 3 1696 228 235 0 0 chr5 145676175 145676243 -6861016 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1696 480 216 39 0 chr5 145676290 145676392 -6860867 + PB1D10 SINE Alu 11 116 -1 3 1696 340 188 83 119 chr5 145676527 145676538 -6860721 + MT2B2 LTR ERVL 153 159 -425 3 1696 482 200 138 58 chr5 145676538 145676676 -6860583 + B1_Mur4 SINE Alu 2 150 0 3 1696 260 360 41 0 chr5 145676684 145676831 -6860428 + RSINE1 SINE B4 2 154 -11 4 1696 320 309 97 43 chr5 145676883 145677069 -6860190 + L1MB7 LINE L1 5980 6175 -9 4 1696 1368 82 22 0 chr5 145677654 145677837 -6859422 + B2_Mm2 SINE B2 2 188 -7 4 1696 582 54 0 0 chr5 145677837 145677911 -6859348 + (GGAAA)n Simple_repeat Simple_repeat 3 76 0 4 1696 496 203 57 8 chr5 145677962 145678086 -6859173 - ID_B1 SINE B4 -16 208 79 4 1696 384 268 128 16 chr5 145678599 145678724 -6858535 - B4 SINE B4 -151 141 3 4 1696 303 235 0 51 chr5 145678876 145678955 -6858304 + ID_B1 SINE B4 87 157 -67 4 1696 230 143 61 0 chr5 145678966 145679015 -6858244 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 4 1696 535 221 18 0 chr5 145679330 145679443 -6857816 + B3A SINE B2 1 115 -83 4 1696 408 277 35 9 chr5 145679580 145679620 -6857639 + ID SINE ID 40 82 -142 4 1696 277 322 8 80 chr5 145679620 145679745 -6857514 + PB1D10 SINE Alu 1 116 -1 4 1696 280 230 340 13 chr5 145680603 145680753 -6856506 + ID_B1 SINE B4 3 201 -23 4 1696 23 68 0 0 chr5 145681172 145681216 -6856043 + AT_rich Low_complexity Low_complexity 1 44 0 4 1696 245 306 125 0 chr5 145681723 145681795 -6855464 + Tigger7 DNA MER2_type 2 82 -2409 4 1696 482 233 35 0 chr5 145681797 145681913 -6855346 + PB1D7 SINE Alu 1 120 0 4 1696 285 214 20 110 chr5 145681962 145682062 -6855197 + B3A SINE B2 108 198 0 4 1696 367 281 163 7 chr5 145682244 145682391 -6854868 + MER58A DNA MER1_type 45 214 -10 4 1696 537 303 121 26 chr5 145683463 145683653 -6853606 - MER82 DNA MER2_type -144 509 302 4 1696 230 303 47 66 chr5 145683873 145683979 -6853280 - MER82 DNA MER2_type -347 306 203 4 1696 1301 86 20 41 chr5 145684818 145685013 -6852246 + B2_Mm1t SINE B2 1 191 -2 4 1696 546 189 214 7 chr5 145685013 145685167 -6852092 + B3 SINE B2 31 216 0 4 1696 1164 56 0 34 chr5 145685178 145685327 -6851932 + B1_Mus1 SINE Alu 2 145 -3 4 1696 468 0 0 0 chr5 145685327 145685379 -6851880 + (TAA)n Simple_repeat Simple_repeat 2 53 0 4 1696 452 238 76 65 chr5 145685462 145685646 -6851613 - B3A SINE B2 -2 214 29 4 1696 616 238 133 36 chr5 145685717 145685747 -6851512 + ID SINE ID 1 30 -194 4 1696 180 0 0 0 chr5 145685747 145685767 -6851492 + (CCTG)n Simple_repeat Simple_repeat 3 22 0 4 1696 616 238 133 36 chr5 145685767 145685932 -6851327 + ID_B1 SINE B4 31 214 -10 4 1696 207 0 0 0 chr5 145686035 145686058 -6851201 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4 1696 884 126 22 7 chr5 145686059 145686195 -6851064 - B1_Mur4 SINE Alu -11 139 2 4 1696 1563 48 21 0 chr5 145686216 145686404 -6850855 - B2_Mm1t SINE B2 0 193 2 4 1696 425 240 231 0 chr5 145687237 145687341 -6849918 + ID_B1 SINE B4 2 129 -95 4 1696 289 217 217 0 chr5 145687306 145687389 -6849870 + PB1D10 SINE Alu 14 114 -3 4 1696 1137 180 11 5 chr5 145687884 145688074 -6849185 + B3 SINE B2 1 191 -25 4 1696 521 320 98 20 chr5 145688146 145688401 -6848858 + L1MD LINE L1 2277 2551 -3595 4 1696 437 217 75 0 chr5 145688404 145688524 -6848735 + L1MD LINE L1 2764 2892 -3254 4 1696 414 243 111 111 chr5 145688741 145688912 -6848347 - B4A SINE B4 -120 172 2 4 1696 405 289 111 7 chr5 145688918 145689009 -6848250 + L1MD LINE L1 2994 3097 -3049 4 1696 611 152 110 90 chr5 145689009 145689154 -6848105 + B1_Mur3 SINE Alu 1 148 -1 4 1696 405 289 111 7 chr5 145689154 145689215 -6848044 + L1MD LINE L1 3098 3161 -2985 4 1696 396 276 63 0 chr5 145689381 145689508 -6847751 + B4A SINE B4 122 256 -36 4 1696 689 288 67 25 chr5 145690233 145690472 -6846787 - B4A SINE B4 -1 291 43 4 1696 749 220 44 44 chr5 145690753 145690934 -6846325 + B3A SINE B2 1 181 -17 4 1696 396 0 0 0 chr5 145690935 145690979 -6846280 + (CA)n Simple_repeat Simple_repeat 1 44 0 4 1696 267 239 12 112 chr5 145691019 145691099 -6846160 + B4A SINE B4 71 142 -150 4 1696 600 193 55 75 chr5 145691041 145691187 -6846072 + B1_Mur1 SINE Alu 6 148 -1 4 1696 216 0 0 0 chr5 145691305 145691329 -6845930 + (CA)n Simple_repeat Simple_repeat 2 25 0 4 1696 411 260 77 22 chr5 145691329 145691446 -6845813 - B3A SINE B2 -51 147 26 4 1696 367 189 252 40 chr5 145692060 145692159 -6845100 - PB1D7 SINE Alu 0 120 1 4 1696 633 90 0 0 chr5 145692172 145692261 -6844998 + (TC)n Simple_repeat Simple_repeat 2 90 0 4 1696 591 236 13 65 chr5 145692309 145692463 -6844796 + RSINE1 SINE B4 3 148 -17 4 1696 27 29 0 0 chr5 145692499 145692533 -6844726 + AT_rich Low_complexity Low_complexity 1 34 0 4 1696 470 208 21 10 chr5 145692538 145692635 -6844624 + PB1D9 SINE Alu 18 115 -5 4 1696 1229 61 0 0 chr5 145693361 145693509 -6843750 + B1_Mus1 SINE Alu 1 148 0 4 1696 291 150 0 0 chr5 145693509 145693569 -6843690 + (A)n Simple_repeat Simple_repeat 1 60 0 4 1696 355 310 36 54 chr5 145693895 145694062 -6843197 - MIR SINE MIR -27 235 72 4 1696 306 186 157 0 chr5 145694086 145694156 -6843103 - ID4 SINE ID -2 81 1 4 1696 1085 202 25 0 chr5 145695048 145695251 -6842008 + ID_B1 SINE B4 2 209 -15 4 1696 1933 196 50 8 chr5 145695538 145695940 -6841319 - MTD LTR MaLR 0 419 1 4 1696 369 0 0 0 chr5 145696122 145696163 -6841096 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1696 243 211 35 0 chr5 145696879 145696936 -6840323 - ID4_ SINE ID -23 60 2 4 1696 310 186 108 81 chr5 145697105 145697216 -6840043 - MER94 DNA AcHobo -20 114 1 4 1696 191 140 91 23 chr5 145697632 145697676 -6839583 - L2c LINE L2 -312 3075 3029 4 1696 246 342 38 0 chr5 145697919 145697998 -6839261 + RSINE1 SINE B4 82 163 -2 4 1696 257 230 100 33 chr5 145698242 145698332 -6838927 + MTE2b LTR MaLR 264 359 -20 4 1696 362 258 99 68 chr5 145698535 145698726 -6838533 + L1MC LINE L1 3900 4096 -2050 4 1696 234 263 80 36 chr5 145699154 145699292 -6837967 + L1MC LINE L1 5332 5475 -2407 4 1696 240 111 0 0 chr5 145699589 145699625 -6837634 + (GGA)n Simple_repeat Simple_repeat 2 37 0 4 1696 588 202 18 0 chr5 145699695 145699804 -6837455 + B1F2 SINE Alu 39 149 0 4 1696 520 311 184 12 chr5 145699829 145700072 -6837187 + L1M4c LINE L1 2543 2832 -4176 4 1696 1192 27 7 40 chr5 145700072 145700224 -6837035 + B1_Mus2 SINE Alu 1 147 0 4 1696 520 318 113 60 chr5 145700224 145700373 -6836886 + L1M4c LINE L1 2833 2923 -4085 4 1696 260 277 71 41 chr5 145700387 145700485 -6836774 + B1F1 SINE Alu 1 101 -48 4 1696 602 291 23 0 chr5 145700526 145700701 -6836558 - B3A SINE B2 -16 182 4 4 1696 1023 294 74 25 chr5 145700724 145701334 -6835925 + L1M4c LINE L1 2997 3636 -3370 4 1696 285 244 215 54 chr5 145701513 145701699 -6835560 + B4A SINE B4 1 216 -76 4 1696 315 0 0 0 chr5 145701757 145701792 -6835467 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1696 468 0 0 0 chr5 145701818 145701870 -6835389 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 4 1696 440 299 163 31 chr5 145701942 145702297 -6834962 + L1M4c LINE L1 4563 4964 -2042 4 1696 429 342 123 16 chr5 145702487 145702805 -6834454 + L1M4c LINE L1 5183 5534 -1472 4 1696 884 62 0 0 chr5 145702814 145702926 -6834333 + B1_Mus1 SINE Alu 37 148 0 4 1696 216 171 0 0 chr5 145702929 145702964 -6834295 + A-rich Low_complexity Low_complexity 2 36 0 4 1696 321 118 0 0 chr5 145703137 145703188 -6834071 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1696 543 223 173 0 chr5 145703244 145703383 -6833876 - RSINE1 SINE B4 0 165 3 4 1696 857 92 15 15 chr5 145703890 145704022 -6833237 - B1_Mur1 SINE Alu -1 148 17 4 1696 243 0 0 0 chr5 145704278 145704305 -6832954 + (CA)n Simple_repeat Simple_repeat 1 27 0 4 1696 208 191 63 0 chr5 145704667 145704730 -6832529 + (GTTTG)n Simple_repeat Simple_repeat 3 69 0 4 1696 525 198 54 0 chr5 145704739 145704850 -6832409 - PB1D10 SINE Alu 0 117 1 4 1696 618 263 7 7 chr5 145705238 145705376 -6831883 - ID_B1 SINE B4 0 224 87 4 1696 373 331 8 16 chr5 145705712 145705835 -6831424 + ID_B1 SINE B4 49 170 -54 4 1696 405 0 0 0 chr5 145705837 145705882 -6831377 + (CA)n Simple_repeat Simple_repeat 1 45 0 4 1696 530 248 130 7 chr5 145706349 145706503 -6830756 - ID_B1 SINE B4 -1 223 51 4 1696 871 227 19 43 chr5 145706546 145706758 -6830501 + B3A SINE B2 1 211 -5 4 1696 343 242 316 13 chr5 145707193 145707348 -6829911 - B4A SINE B4 -89 203 2 4 1696 408 297 91 59 chr5 145707585 145707771 -6829488 + B3A SINE B2 7 198 0 4 1696 389 291 194 26 chr5 145707859 145708014 -6829245 - B3A SINE B2 -15 183 3 4 1696 181 354 20 30 chr5 145708257 145708356 -6828903 - MIR3 SINE MIR -104 104 7 4 1696 189 0 0 0 chr5 145709658 145709679 -6827580 + (CGGA)n Simple_repeat Simple_repeat 2 22 0 4 1696 277 262 97 53 chr5 145709970 145710083 -6827176 - PB1 SINE Alu -1 126 9 4 1696 367 272 10 10 chr5 145710144 145710248 -6827011 + PB1D10 SINE Alu 1 104 -13 4 1696 449 185 54 0 chr5 145710480 145710572 -6826687 + PB1D9 SINE Alu 18 114 -6 4 1696 809 83 9 0 chr5 145710636 145710745 -6826514 + B1_Mus1 SINE Alu 1 110 -38 4 1696 262 197 329 0 chr5 145711627 145711703 -6825556 + PB1D10 SINE Alu 3 103 -14 4 1696 217 231 0 0 chr5 145711715 145711754 -6825505 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 4 1696 1160 182 18 14 chr5 145711785 145712008 -6825251 - URR1B DNA MER1_type -1 224 1 4 1696 1189 75 0 0 chr5 145712026 145712173 -6825086 + B1_Mus1 SINE Alu 2 148 0 4 1696 204 125 0 0 chr5 145712173 145712205 -6825054 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1696 495 248 42 8 chr5 145712222 145712340 -6824919 + RSINE1 SINE B4 42 163 -2 4 1696 792 130 114 0 chr5 145712517 145712648 -6824611 - B1_Mur2 SINE Alu -2 147 2 4 1696 409 279 74 0 chr5 145712660 145712782 -6824477 - RSINE1 SINE B4 -10 155 25 4 1696 466 208 19 9 chr5 145712995 145713102 -6824157 - PB1D10 SINE Alu -9 108 1 4 1696 851 201 95 0 chr5 145713465 145713654 -6823605 - ID_B1 SINE B4 0 224 18 4 1696 267 246 66 0 chr5 145713762 145713823 -6823436 + MLT1L LTR MaLR 536 600 -10 5 1696 411 98 0 0 chr5 145714222 145714283 -6822976 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1696 185 345 11 44 chr5 145714661 145714752 -6822507 - L4 LINE RTE -289 1740 1653 5 1696 523 243 119 26 chr5 145714925 145715119 -6822140 + B4A SINE B4 2 213 -79 5 1696 323 321 35 18 chr5 145715642 145715756 -6821503 - PB1D10 SINE Alu -1 116 1 5 1696 1614 47 9 1 chr5 145716074 145716504 -6820755 + ZP3AR Satellite Satellite 1 433 0 5 1696 230 294 40 128 chr5 145716577 145716702 -6820557 + MT2B2 LTR ERVL 133 246 -338 5 1696 323 349 0 9 chr5 145716601 145716708 -6820551 + ID_B1 SINE B4 70 175 -49 5 1696 436 250 0 0 chr5 145716627 145716711 -6820548 + PB1D10 SINE Alu 14 97 -20 5 1696 597 210 42 0 chr5 145716817 145716936 -6820323 + RSINE1 SINE B4 3 126 -39 5 1696 578 255 28 14 chr5 145717523 145717666 -6819593 + RSINE1 SINE B4 20 164 -1 5 1696 1096 84 0 0 chr5 145717844 145717986 -6819273 + B1_Mus1 SINE Alu 1 142 -6 5 1696 302 203 28 28 chr5 145718325 145718396 -6818863 + ID_B1 SINE B4 99 169 -55 5 1696 275 202 135 56 chr5 145718396 145718413 -6818846 + PB1D7 SINE Alu 18 112 -8 5 1696 492 219 174 46 chr5 145718562 145718821 -6818438 + B4A SINE B4 1 292 0 5 1696 1062 126 53 32 chr5 145718995 145719184 -6818075 + URR1A DNA MER1_type 31 223 -3 5 1696 235 279 24 37 chr5 145719222 145719304 -6817955 + ID4_ SINE ID 3 83 0 5 1696 269 341 24 24 chr5 145719311 145719437 -6817822 + ID_B1 SINE B4 1 126 -98 5 1696 338 245 189 9 chr5 145719506 145719617 -6817642 - RMER15 LTR ERVL -89 486 356 5 1696 757 112 181 16 chr5 145720772 145720899 -6816360 + B1_Mus1 SINE Alu 1 148 0 5 1696 533 260 71 32 chr5 145721315 145721496 -6815763 + B4A SINE B4 114 287 -5 5 1696 778 242 49 29 chr5 145722070 145722274 -6814985 + B3 SINE B2 2 209 -7 5 1696 1409 105 0 5 chr5 145722460 145722651 -6814608 + B2_Mm2 SINE B2 1 190 -5 5 1696 383 261 373 37 chr5 145723371 145723585 -6813674 - B4A SINE B4 -6 286 1 5 1696 183 100 0 0 chr5 145726279 145726309 -6810950 + (G)n Simple_repeat Simple_repeat 1 30 0 5 1696 189 74 0 0 chr5 145726468 145726495 -6810764 + (CCCGG)n Simple_repeat Simple_repeat 4 30 0 5 1696 201 233 8 49 chr5 145726611 145726733 -6810526 + (CCG)n Simple_repeat Simple_repeat 2 118 0 5 1696 435 216 41 0 chr5 145727595 145727692 -6809567 - PB1D7 SINE Alu -6 114 14 5 1696 623 194 52 17 chr5 145727959 145728142 -6809117 - B3 SINE B2 -6 189 1 5 1696 471 257 60 66 chr5 145728142 145728314 -6808945 + B4A SINE B4 77 247 -45 5 1696 498 33 0 0 chr5 145728324 145728384 -6808875 + (TC)n Simple_repeat Simple_repeat 2 61 0 5 1696 1059 94 0 0 chr5 145728477 145728691 -6808568 + (CA)n Simple_repeat Simple_repeat 1 214 0 5 1696 996 241 67 8 chr5 145729062 145729300 -6807959 - B4A SINE B4 -39 253 2 5 1696 928 285 0 5 chr5 145729301 145729523 -6807736 - ID_B1 SINE B4 -3 221 1 5 1696 229 265 0 0 chr5 145729699 145729748 -6807511 + ID_B1 SINE B4 175 223 -1 5 1696 331 291 339 10 chr5 145729751 145729921 -6807338 + B4A SINE B4 3 228 -64 5 1696 429 216 14 113 chr5 145729921 145730062 -6807197 + RSINE1 SINE B4 2 128 -37 5 1696 496 187 33 0 chr5 145730197 145730288 -6806971 - ID_B1 SINE B4 -4 220 127 5 1696 1086 136 6 0 chr5 145730683 145730852 -6806407 + URR1B DNA MER1_type 56 225 0 5 1696 603 240 0 39 chr5 145730891 145731021 -6806238 + RSINE1 SINE B4 2 126 -39 5 1696 24 24 0 24 chr5 145731263 145731289 -6805970 + AT_rich Low_complexity Low_complexity 1 26 0 5 1696 2221 72 39 7 chr5 145731289 145731597 -6805662 + L1_Mus2 LINE L1 6249 6566 0 5 1696 24 24 0 24 chr5 145731597 145731612 -6805647 + AT_rich Low_complexity Low_complexity 1 15 0 5 1696 1046 118 50 22 chr5 145731652 145731834 -6805425 - B2_Mm2 SINE B2 -6 189 3 5 1696 807 121 68 8 chr5 145731895 145732028 -6805231 + MTD LTR MaLR 119 259 -160 5 1696 1427 190 124 30 chr5 145732028 145732220 -6805039 + RMER6B LTR ERVK 1 230 -231 5 1696 1077 130 42 42 chr5 145732220 145732413 -6804846 + B2_Mm2 SINE B2 3 195 0 5 1696 1427 190 124 30 chr5 145732413 145732584 -6804675 + RMER6B LTR ERVK 231 398 -63 5 1696 748 199 39 32 chr5 145732622 145732778 -6804481 + MTD LTR MaLR 254 410 -9 5 1696 328 284 105 0 chr5 145732782 145732877 -6804382 - RSINE1 SINE B4 -35 130 26 5 1696 433 254 26 9 chr5 145732880 145732995 -6804264 - PB1D10 SINE Alu 0 117 1 5 1696 497 219 79 24 chr5 145732999 145733125 -6804134 - ID_B1 SINE B4 -12 212 80 5 1696 466 67 0 0 chr5 145733221 145733281 -6803978 + B1_Mus2 SINE Alu 88 147 0 5 1696 899 167 8 8 chr5 145733287 145733527 -6803732 + GA-rich Low_complexity Low_complexity 1 240 0 5 1696 625 289 69 0 chr5 145733626 145733799 -6803460 + ORR1D2 LTR MaLR 43 227 -143 5 1696 1786 129 136 19 chr5 145733800 145734117 -6803142 - ORR1B1 LTR MaLR 0 394 41 5 1696 640 180 108 8 chr5 145734122 145734251 -6803008 + ORR1D2 LTR MaLR 222 363 -7 5 1696 251 180 6 150 chr5 145734263 145734346 -6802913 - PB1D7 SINE Alu -41 76 1 5 1696 441 176 14 0 chr5 145734485 145734559 -6802700 - ID_B1 SINE B4 -125 99 25 5 1696 524 254 43 14 chr5 145734560 145734700 -6802559 + B4A SINE B4 143 286 -6 5 1696 553 315 8 0 chr5 145734769 145734896 -6802363 + ID_B1 SINE B4 81 208 -16 5 1696 549 268 24 0 chr5 145734954 145735077 -6802182 - B1F1 SINE Alu -21 128 3 5 1696 1005 244 151 19 chr5 145735214 145735522 -6801737 - MTEa LTR MaLR -8 371 1 5 1696 742 256 5 75 chr5 145735611 145735810 -6801449 - B3A SINE B2 -13 185 1 5 1696 391 300 73 0 chr5 145736075 145736185 -6801074 - B4A SINE B4 -171 121 4 5 1696 215 217 0 16 chr5 145736602 145736663 -6800596 + CT-rich Low_complexity Low_complexity 2 61 0 5 1696 555 154 0 21 chr5 145736664 145736757 -6800502 - B1F SINE Alu -7 142 52 5 1696 541 268 102 94 chr5 145736757 145737243 -6800016 + RLTR11A2 LTR ERVK 1 509 -18 5 1696 666 232 53 32 chr5 145737378 145737565 -6799694 - B2_Mm2 SINE B2 -3 192 2 5 1696 546 289 90 20 chr5 145737611 145737812 -6799447 - B4A SINE B4 -75 217 3 5 1696 180 0 0 0 chr5 145737971 145737991 -6799268 + (TG)n Simple_repeat Simple_repeat 1 20 0 5 1696 408 314 103 29 chr5 145737997 145738269 -6798990 - B4A SINE B4 0 292 1 5 1696 527 272 41 58 chr5 145738281 145738453 -6798806 - ID_B1 SINE B4 -7 217 49 5 1696 263 309 146 94 chr5 145738593 145738868 -6798391 + MLT1A0 LTR MaLR 74 362 -3 5 1696 265 247 0 72 chr5 145738898 145738981 -6798278 - ID_B1 SINE B4 -41 183 107 5 1696 269 26 26 0 chr5 145739019 145739057 -6798202 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5 1696 1216 43 0 0 chr5 145739057 145739196 -6798063 - B1_Mus1 SINE Alu -9 139 1 5 1696 672 271 42 19 chr5 145740001 145740215 -6797044 - ID_B1 SINE B4 -4 220 2 5 1696 281 296 0 0 chr5 145740221 145740292 -6796967 - ID_B1 SINE B4 -74 150 80 5 1696 551 190 0 20 chr5 145740302 145740404 -6796855 - PB1D9 SINE Alu 0 120 21 5 1696 1240 34 0 13 chr5 145740461 145740610 -6796649 + B1_Mus2 SINE Alu 1 147 0 5 1696 333 0 0 0 chr5 145740610 145740647 -6796612 + (A)n Simple_repeat Simple_repeat 1 37 0 5 1696 594 204 44 0 chr5 145740647 145740760 -6796499 - B1_Mur3 SINE Alu -13 136 19 5 1696 245 214 62 134 chr5 145740676 145740773 -6796486 - RLTR25B LTR ERVK -518 510 421 5 1696 860 145 57 14 chr5 145740837 145740977 -6796282 - B1_Mus1 SINE Alu -2 146 1 5 1696 219 254 0 35 chr5 145740980 145741037 -6796222 - B1_Mur4 SINE Alu 0 150 96 5 1696 1101 77 14 7 chr5 145741283 145741426 -6795833 + B1_Mm SINE Alu 2 145 -2 5 1696 1284 72 0 6 chr5 145741616 145741783 -6795476 - B2_Mm2 SINE B2 -26 169 4 5 1696 481 316 29 7 chr5 145741826 145741963 -6795296 - ZP3AR Satellite Satellite -55 157 18 5 1696 348 43 0 0 chr5 145742266 145742312 -6794947 + (TG)n Simple_repeat Simple_repeat 2 47 0 5 1696 1954 163 87 3 chr5 145742312 145742680 -6794579 + MTC LTR MaLR 22 420 -1 5 1696 405 248 203 0 chr5 145742697 145742830 -6794429 - RSINE1 SINE B4 -4 161 2 5 1696 795 148 33 0 chr5 145742863 145742985 -6794274 - B1_Mus1 SINE Alu -22 126 1 5 1696 363 272 43 101 chr5 145742985 145743016 -6794243 - MT2B LTR ERVL -446 155 133 5 1696 2099 76 48 26 chr5 145743030 145743287 -6793972 + ORR1A2 LTR MaLR 1 262 -65 5 1696 1435 85 0 5 chr5 145743287 145743477 -6793782 + B2_Mm2 SINE B2 2 190 -5 5 1696 2099 76 48 26 chr5 145743477 145743531 -6793728 + ORR1A2 LTR MaLR 263 319 -8 5 1696 803 276 35 22 chr5 145743614 145743844 -6793415 + B4 SINE B4 7 239 -53 5 1696 297 155 0 0 chr5 145743968 145744026 -6793233 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 5 1696 318 339 36 95 chr5 145744041 145744178 -6793081 + B4A SINE B4 7 135 -157 5 1696 1102 176 62 5 chr5 145744179 145744373 -6792886 + B3 SINE B2 5 209 -7 5 1696 404 279 92 8 chr5 145744434 145744564 -6792695 + B1_Mur1 SINE Alu 3 143 -6 5 1696 287 208 47 47 chr5 145744570 145744676 -6792583 + L1_Mur3 LINE L1 2066 2187 -3660 5 1696 3276 196 27 45 chr5 145744763 145745544 -6791715 + RMER1C Other Other 575 1341 -1 5 1696 629 213 48 26 chr5 145745553 145745780 -6791479 + L1_Mur3 LINE L1 3480 3711 -2169 5 1696 795 254 20 10 chr5 145745783 145745978 -6791281 + B3A SINE B2 1 197 -1 5 1696 322 341 35 43 chr5 145746050 145746332 -6790927 + L1MA4 LINE L1 5590 5869 -431 6 1696 497 261 27 0 chr5 145746813 145746924 -6790335 - B3A SINE B2 -83 115 2 6 1696 910 249 47 0 chr5 145746925 145747138 -6790121 - B4 SINE B4 -65 227 5 6 1696 1788 235 21 11 chr5 145747186 145747605 -6789654 + Lx5 LINE L1 6619 7019 -31 6 1696 275 263 155 21 chr5 145747677 145747774 -6789485 - PB1D10 SINE Alu -6 111 2 6 1696 1115 114 0 0 chr5 145747785 145747934 -6789325 - B1_Mur3 SINE Alu 0 149 1 6 1696 344 287 53 0 chr5 145747935 145748029 -6789230 - PB1D10 SINE Alu -5 112 14 6 1696 843 98 0 0 chr5 145748075 145748207 -6789052 + (GA)n Simple_repeat Simple_repeat 1 132 0 6 1696 488 313 19 52 chr5 145748216 145748371 -6788888 - RSINE1 SINE B4 -14 151 2 6 1696 256 278 135 6 chr5 145748440 145748603 -6788656 - L1MB3 LINE L1 -100 6083 5900 6 1696 957 283 47 12 chr5 145748704 145748958 -6788301 - B4A SINE B4 -13 279 17 6 1696 468 242 0 10 chr5 145748979 145749079 -6788180 - ID_B1 SINE B4 -40 184 86 6 1696 378 0 0 0 chr5 145749515 145749557 -6787702 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1696 333 278 61 10 chr5 145749568 145749666 -6787593 - RSINE1 SINE B4 -40 125 23 6 1696 297 131 0 0 chr5 145749681 145749728 -6787531 + MTC LTR MaLR 35 81 -338 6 1696 756 172 34 56 chr5 145749728 145749886 -6787373 + B2_Mm2 SINE B2 2 154 -41 6 1696 219 114 0 0 chr5 145749886 145749921 -6787338 + (CAAG)n Simple_repeat Simple_repeat 1 35 0 6 1696 756 172 34 56 chr5 145749921 145749941 -6787318 + B2_Mm2 SINE B2 155 176 -19 6 1696 459 52 0 0 chr5 145749941 145749999 -6787260 + (GA)n Simple_repeat Simple_repeat 1 58 0 6 1696 1021 144 0 6 chr5 145750031 145750192 -6787067 + MTC LTR MaLR 262 421 0 6 1696 536 308 126 0 chr5 145750250 145750432 -6786827 - B4 SINE B4 -87 205 1 6 1696 348 148 0 0 chr5 145750758 145750819 -6786440 + (TG)n Simple_repeat Simple_repeat 1 61 0 6 1696 301 337 0 6 chr5 145751023 145751196 -6786063 + (TTCA)n Simple_repeat Simple_repeat 4 175 0 6 1696 441 209 11 42 chr5 145751385 145751480 -6785779 - ID_B1 SINE B4 -11 213 122 6 1696 1041 215 54 0 chr5 145751718 145751923 -6785336 + B3 SINE B2 1 216 0 6 1697 511 214 102 48 chr5 145752126 145752293 -6784966 + B3A SINE B2 5 180 -18 6 1697 412 265 49 0 chr5 145752765 145752867 -6784392 - B1F SINE Alu -25 124 18 6 1697 1193 74 0 0 chr5 145752881 145753029 -6784230 - B1_Mus1 SINE Alu 0 148 1 6 1697 186 103 0 0 chr5 145753106 145753135 -6784124 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 6 1697 869 239 25 10 chr5 145753135 145753338 -6783921 - ID_B1 SINE B4 -18 206 1 6 1697 330 224 45 0 chr5 145753391 145753458 -6783801 - RSINE1 SINE B4 -2 163 94 6 1697 729 255 49 5 chr5 145753828 145754033 -6783226 - ID_B1 SINE B4 -8 216 3 6 1697 1323 67 50 11 chr5 145754070 145754250 -6783009 + B2_Mm2 SINE B2 1 187 -8 6 1697 345 312 10 0 chr5 145754280 145754376 -6782883 - PB1D10 SINE Alu -18 99 3 6 1697 432 272 0 42 chr5 145754525 145754644 -6782615 - ID_B1 SINE B4 0 224 111 6 1697 343 343 42 14 chr5 145754527 145754669 -6782590 - B1F SINE Alu 0 149 4 6 1697 337 241 76 0 chr5 145754669 145754705 -6782554 - B4A SINE B4 -250 42 1 6 1697 543 256 139 30 chr5 145755154 145755355 -6781904 + ID_B1 SINE B4 1 223 -1 6 1697 451 138 31 103 chr5 145755370 145755467 -6781792 - ID_B1 SINE B4 -2 222 133 6 1697 1516 38 0 66 chr5 145755482 145755680 -6781579 - B2_Mm1t SINE B2 -7 186 2 6 1697 767 197 112 20 chr5 145755690 145755887 -6781372 - ID_B1 SINE B4 -7 217 3 6 1697 242 239 134 0 chr5 145755887 145755954 -6781305 - PB1D10 SINE Alu -41 76 1 6 1697 1103 120 33 49 chr5 145756342 145756526 -6780733 + B2_Mm2 SINE B2 1 181 -14 6 1697 670 286 0 18 chr5 145756552 145756716 -6780543 + RSINE1 SINE B4 3 163 -2 6 1697 387 264 47 0 chr5 145756743 145756849 -6780410 - PB1D10 SINE Alu -6 111 1 6 1697 417 333 54 0 chr5 145757011 145757140 -6780119 + ID_B1 SINE B4 78 213 -11 6 1697 594 264 39 0 chr5 145757190 145757319 -6779940 + B1_Mur1 SINE Alu 3 136 -13 6 1697 408 256 40 11 chr5 145757338 145757512 -6779747 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 6 1697 198 0 0 0 chr5 145757520 145757542 -6779717 + (TG)n Simple_repeat Simple_repeat 2 23 0 6 1697 883 266 24 0 chr5 145757577 145757784 -6779475 - ID_B1 SINE B4 -1 223 12 6 1697 618 279 22 38 chr5 145758408 145758591 -6778668 - B3A SINE B2 -18 180 1 6 1697 532 299 39 83 chr5 145758623 145758943 -6778316 - B4 SINE B4 0 292 2 6 1697 231 318 126 36 chr5 145758980 145759091 -6778168 + B1F1 SINE Alu 1 121 -28 6 1697 321 89 0 0 chr5 145759197 145759242 -6778017 + (CA)n Simple_repeat Simple_repeat 2 46 0 6 1697 213 191 18 37 chr5 145759242 145759351 -6777908 + (TA)n Simple_repeat Simple_repeat 1 107 0 6 1697 205 89 44 0 chr5 145759352 145759397 -6777862 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 6 1697 288 241 17 0 chr5 145759402 145759460 -6777799 - ID4_ SINE ID -19 64 6 6 1697 895 246 37 0 chr5 145759474 145759661 -6777598 - B3A SINE B2 -2 196 3 6 1697 430 248 97 0 chr5 145759688 145759801 -6777458 - PB1 SINE Alu -2 125 2 6 1697 576 0 0 0 chr5 145759817 145759881 -6777378 + (TCCC)n Simple_repeat Simple_repeat 4 67 0 6 1697 351 0 0 0 chr5 145759881 145759919 -6777340 + (TTTC)n Simple_repeat Simple_repeat 1 39 0 6 1697 545 269 156 0 chr5 145759970 145760111 -6777148 - RSINE1 SINE B4 0 165 3 6 1697 622 145 88 37 chr5 145760194 145760330 -6776929 + B1_Mur4 SINE Alu 2 144 -6 6 1697 327 343 29 15 chr5 145760492 145760628 -6776631 - B1F1 SINE Alu -11 138 1 6 1697 739 279 18 40 chr5 145760785 145761013 -6776246 + ID_B1 SINE B4 2 224 0 6 1697 267 59 0 0 chr5 145761013 145761047 -6776212 + (GGA)n Simple_repeat Simple_repeat 2 35 0 6 1697 670 192 13 0 chr5 145761057 145761208 -6776051 + GA-rich Low_complexity Low_complexity 3 155 0 6 1697 210 310 17 17 chr5 145761227 145761286 -6775973 + B4A SINE B4 3 61 -231 6 1697 1100 40 0 49 chr5 145761286 145761572 -6775687 + (TTTC)n Simple_repeat Simple_repeat 1 271 0 6 1697 1032 61 0 8 chr5 145761572 145761705 -6775554 - B1_Mus1 SINE Alu -1 147 16 6 1697 279 0 0 0 chr5 145761747 145761778 -6775481 + (TG)n Simple_repeat Simple_repeat 2 32 0 6 1697 1285 34 0 0 chr5 145761798 145761946 -6775313 + B1_Mus1 SINE Alu 1 148 0 6 1697 231 146 0 0 chr5 145761946 145762001 -6775258 + (A)n Simple_repeat Simple_repeat 1 55 0 6 1697 249 187 108 96 chr5 145762110 145762193 -6775066 + MT2B LTR ERVL 151 234 -367 6 1697 517 252 9 0 chr5 145762128 145762235 -6775024 + B1_Mur1 SINE Alu 14 121 -28 6 1697 685 239 74 53 chr5 145762325 145762515 -6774744 + B3A SINE B2 1 194 -4 6 1697 454 319 57 14 chr5 145762540 145762680 -6774579 + RSINE1 SINE B4 6 151 -14 6 1697 216 0 0 0 chr5 145763008 145763032 -6774227 + (TG)n Simple_repeat Simple_repeat 1 24 0 6 1697 195 42 0 0 chr5 145763034 145763058 -6774201 + (CA)n Simple_repeat Simple_repeat 1 24 0 6 1697 212 263 17 50 chr5 145763059 145763119 -6774140 - B4A SINE B4 -154 138 81 6 1697 781 190 0 33 chr5 145763114 145763267 -6773992 - B1_Mur4 SINE Alu 0 150 2 6 1697 258 327 86 9 chr5 145763270 145763375 -6773884 - B1F SINE Alu -1 148 36 6 1697 560 322 33 7 chr5 145763429 145763582 -6773677 - RSINE1 SINE B4 -6 159 3 6 1697 831 257 0 33 chr5 145763596 145763777 -6773482 - B3 SINE B2 -41 175 1 6 1697 545 223 12 173 chr5 145763783 145763951 -6773308 - B1_Mur1 SINE Alu -8 141 1 6 1697 784 260 6 29 chr5 145763951 145764004 -6773255 - ID SINE ID -146 78 30 6 1697 692 216 21 21 chr5 145764193 145764335 -6772924 + B1_Mur3 SINE Alu 8 149 0 6 1697 180 0 0 0 chr5 145764342 145764362 -6772897 + (CAAAC)n Simple_repeat Simple_repeat 3 22 0 6 1697 1241 70 11 17 chr5 145764812 145764987 -6772272 + B2_Mm2 SINE B2 2 175 -20 6 1697 612 261 55 28 chr5 145765020 145765201 -6772058 - ID_B1 SINE B4 0 224 39 6 1697 378 342 0 26 chr5 145765228 145765342 -6771917 - PB1D10 SINE Alu 0 117 7 6 1697 453 220 124 52 chr5 145765359 145765522 -6771737 - ID_B1 SINE B4 -46 246 78 6 1697 327 296 0 12 chr5 145766143 145766225 -6771034 - ID4_ SINE ID -1 82 2 6 1697 998 191 22 3 chr5 145766228 145766437 -6770822 - ZP3AR Satellite Satellite -16 213 1 6 1697 2430 203 55 4 chr5 145766934 145767459 -6769800 + Lx5 LINE L1 6490 7041 -9 6 1697 188 35 35 0 chr5 145767487 145767516 -6769743 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 6 1697 1197 62 0 0 chr5 145767518 145767662 -6769597 + B1_Mm SINE Alu 1 144 -3 6 1697 180 0 0 0 chr5 145767662 145767682 -6769577 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6 1697 265 281 0 0 chr5 145767774 145767838 -6769421 + B4A SINE B4 15 78 -214 6 1697 364 232 63 0 chr5 145767843 145767938 -6769321 - ZP3AR Satellite Satellite -64 148 48 6 1697 863 246 44 0 chr5 145768277 145768480 -6768779 - B3 SINE B2 -4 212 1 6 1697 522 246 108 7 chr5 145768513 145768652 -6768607 - RSINE1 SINE B4 -12 153 1 6 1697 287 236 122 78 chr5 145768663 145768778 -6768481 - PB1D7 SINE Alu 0 120 1 7 1697 623 257 40 13 chr5 145769133 145769206 -6768053 + ID SINE ID 3 79 -145 7 1697 230 350 30 61 chr5 145769206 145769285 -6767974 + B1_Mur3 SINE Alu 1 78 -71 7 1697 953 207 37 28 chr5 145769285 145769499 -6767760 + B3 SINE B2 1 216 0 7 1697 230 350 30 61 chr5 145769499 145769550 -6767709 + B1_Mur3 SINE Alu 79 127 -22 7 1697 363 292 17 17 chr5 145769838 145769953 -6767306 - ID_B1 SINE B4 -34 190 76 7 1697 251 246 18 0 chr5 145770009 145770066 -6767193 - RCHARR1 DNA MER1_type -36 938 881 7 1697 391 269 54 71 chr5 145770077 145770245 -6767014 + RSINE1 SINE B4 1 165 0 7 1697 297 0 0 0 chr5 145770269 145770302 -6766957 + (A)n Simple_repeat Simple_repeat 1 33 0 7 1697 1138 238 34 19 chr5 145770320 145770586 -6766673 + RMER10B LTR ERVL 127 396 -2 7 1697 451 301 20 107 chr5 145770637 145770735 -6766524 + B1_Mur1 SINE Alu 1 94 -55 7 1697 981 201 26 56 chr5 145770735 145770967 -6766292 - URR1B DNA MER1_type 0 225 1 7 1697 451 301 20 107 chr5 145770967 145771017 -6766242 + B1_Mur1 SINE Alu 95 136 -13 7 1697 324 262 48 19 chr5 145771044 145771149 -6766110 - RCHARR1 DNA MER1_type -143 831 724 7 1697 216 279 0 16 chr5 145771166 145771228 -6766031 + B4 SINE B4 17 77 -215 7 1697 750 277 152 4 chr5 145771854 145772104 -6765155 + B4 SINE B4 2 288 -4 7 1697 466 131 24 14 chr5 145772290 145772385 -6764874 + B1_Mur3 SINE Alu 46 143 -6 7 1697 232 94 19 19 chr5 145772397 145772451 -6764808 + (CAAAA)n Simple_repeat Simple_repeat 4 57 0 7 1697 1316 107 37 0 chr5 145772451 145772638 -6764621 + B2_Mm2 SINE B2 1 194 -1 7 1697 3326 90 0 0 chr5 145772638 145773094 -6764165 - L1_Mus1 LINE L1 -35 5848 5393 7 1697 5842 57 0 0 chr5 145773094 145773802 -6763457 + L1_Mus1 LINE L1 5859 6566 -1 7 1697 506 266 6 205 chr5 145773896 145774057 -6763202 - B3A SINE B2 0 198 57 7 1697 717 211 13 26 chr5 145774059 145774210 -6763049 + B1_Mur4 SINE Alu 1 149 -1 7 1697 288 259 0 0 chr5 145774250 145774304 -6762955 - B3A SINE B2 -131 67 14 7 1697 21 0 0 0 chr5 145774342 145774363 -6762896 + AT_rich Low_complexity Low_complexity 1 21 0 7 1697 601 307 47 9 chr5 145774452 145774666 -6762593 + ID_B1 SINE B4 2 223 -1 7 1697 411 270 10 0 chr5 145774789 145774889 -6762370 + PB1D10 SINE Alu 2 102 -15 7 1697 228 287 74 57 chr5 145775018 145775140 -6762119 - MURVY-LTR LTR ERV1 -53 466 343 7 1697 445 265 49 124 chr5 145775163 145775358 -6761901 - ID_B1 SINE B4 -101 191 5 7 1697 448 273 52 15 chr5 145775309 145775443 -6761816 + B3 SINE B2 67 205 -11 7 1697 233 75 25 0 chr5 145775540 145775580 -6761679 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 7 1697 304 219 0 0 chr5 145775586 145775650 -6761609 - B1_Mur3 SINE Alu -6 143 80 7 1697 919 250 141 16 chr5 145775859 145776115 -6761144 - B4 SINE B4 0 292 5 7 1697 347 252 85 54 chr5 145776656 145776786 -6760473 + Tigger5 DNA MER2_type 2184 2317 -89 7 1697 425 284 0 0 chr5 145776809 145776918 -6760341 - PB1D10 SINE Alu -8 109 1 7 1697 219 36 0 0 chr5 145777527 145777555 -6759704 + (TC)n Simple_repeat Simple_repeat 1 28 0 7 1697 225 0 0 0 chr5 145777559 145777584 -6759675 + (TG)n Simple_repeat Simple_repeat 1 25 0 7 1697 356 259 56 11 chr5 145777733 145777823 -6759436 - RSINE1 SINE B4 -12 153 60 7 1697 2273 100 3 15 chr5 145777873 145778208 -6759051 - L1Md_F2 LINE L1 0 6582 6252 7 1697 590 180 185 92 chr5 145778284 145778468 -6758791 - B3 SINE B2 -13 203 3 7 1697 215 31 0 30 chr5 145778732 145778765 -6758494 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 7 1697 930 91 23 8 chr5 145778765 145778898 -6758361 - B1_Mus1 SINE Alu -13 135 1 7 1697 324 244 12 0 chr5 145778998 145779084 -6758175 + RCHARR1 DNA MER1_type 724 810 -164 7 1697 814 176 122 5 chr5 145779166 145779355 -6757904 + URR1B DNA MER1_type 15 225 0 7 1697 339 323 11 0 chr5 145779357 145779450 -6757809 - B1_Mur3 SINE Alu -55 94 1 7 1697 239 227 152 0 chr5 145779512 145779578 -6757681 + B1F SINE Alu 37 112 -8 7 1697 180 77 0 0 chr5 145779644 145779670 -6757589 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 7 1697 267 299 50 17 chr5 145779701 145779820 -6757439 - RSINE1 SINE B4 -39 126 4 7 1697 347 273 64 32 chr5 145779910 145780035 -6757224 + ID_B1 SINE B4 88 216 -8 7 1697 843 229 34 19 chr5 145780447 145780652 -6756607 - B3 SINE B2 -2 214 7 7 1697 537 277 40 13 chr5 145780660 145780810 -6756449 - ID_B1 SINE B4 -68 156 3 7 1697 310 227 67 22 chr5 145781165 145781255 -6756004 + PB1D7 SINE Alu 1 94 -26 7 1697 494 237 110 7 chr5 145781302 145781438 -6755821 + RSINE1 SINE B4 4 153 -12 7 1697 772 251 44 0 chr5 145781471 145781674 -6755585 + B3 SINE B2 1 212 -4 7 1697 365 182 67 11 chr5 145782021 145782110 -6755149 + ZP3AR Satellite Satellite 2 95 -117 7 1697 260 273 0 0 chr5 145782124 145782179 -6755080 - B4A SINE B4 -223 69 15 7 1697 21599 183 49 22 chr5 145782332 145784658 -6752601 - Lx5 LINE L1 0 7050 4632 7 1697 207 49 73 0 chr5 145784658 145784699 -6752560 + (TTG)n Simple_repeat Simple_repeat 2 45 0 7 1697 21599 170 36 32 chr5 145784699 145786282 -6750977 - Lx5 LINE L1 -1246 4631 3058 7 1697 366 61 0 0 chr5 145786282 145786331 -6750928 + (CTG)n Simple_repeat Simple_repeat 2 50 0 7 1697 21599 170 36 32 chr5 145786331 145787214 -6750045 - Lx5 LINE L1 -2820 3057 2149 7 1697 1201 35 7 0 chr5 145787214 145787359 -6749900 - B1_Mm SINE Alu 0 147 2 7 1697 21599 170 36 32 chr5 145787359 145787460 -6749799 - Lx5 LINE L1 -3729 2148 2061 7 1697 726 12 0 0 chr5 145787460 145787543 -6749716 + (TG)n Simple_repeat Simple_repeat 1 83 0 7 1697 21599 141 33 67 chr5 145787543 145789263 -6747996 - Lx5 LINE L1 -3817 2060 420 7 1697 573 55 0 0 chr5 145794449 145794522 -6742737 + (TC)n Simple_repeat Simple_repeat 2 74 0 7 1697 303 265 0 10 chr5 145794522 145794621 -6742638 + (TG)n Simple_repeat Simple_repeat 2 99 0 7 1697 328 300 29 71 chr5 145794623 145794763 -6742496 - RSINE1 SINE B4 -5 160 27 7 1697 306 287 69 15 chr5 145794772 145794903 -6742356 - ID_B1 SINE B4 -5 219 82 7 1697 1139 57 43 0 chr5 145795136 145795277 -6741982 - B1_Mus2 SINE Alu 0 147 1 7 1697 359 211 293 0 chr5 145795333 145795456 -6741803 - RSINE1 SINE B4 -4 161 3 7 1697 745 223 64 74 chr5 145795570 145795773 -6741486 - B3 SINE B2 -13 203 3 7 1697 396 40 0 0 chr5 145795958 145796008 -6741251 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1697 355 221 12 0 chr5 145796839 145796925 -6740334 + RCHARR1 DNA MER1_type 724 810 -164 7 1697 1122 78 0 0 chr5 145796947 145797101 -6740158 + (TTC)n Simple_repeat Simple_repeat 3 156 0 7 1697 504 294 7 77 chr5 145797101 145797161 -6740098 - B1F2 SINE Alu -4 145 91 7 1697 1041 180 36 18 chr5 145797161 145797382 -6739877 + URR1B DNA MER1_type 1 225 0 7 1697 504 294 7 77 chr5 145797382 145797476 -6739783 - B1F2 SINE Alu -59 90 2 7 1697 1101 71 28 0 chr5 145797692 145797833 -6739426 - B1_Mus1 SINE Alu 0 148 4 7 1697 243 203 0 0 chr5 145797876 145797945 -6739314 + GA-rich Low_complexity Low_complexity 1 69 0 7 1697 878 139 0 0 chr5 145798143 145798280 -6738979 - B1_Mus1 SINE Alu -9 139 3 7 1697 701 167 26 65 chr5 145798351 145798505 -6738754 - RLTR20D LTR ERVK 0 578 431 7 1697 726 234 96 46 chr5 145798513 145798773 -6738486 - RLTR20D LTR ERVK -295 273 1 7 1697 1454 152 72 26 chr5 145798813 145798857 -6738402 + RLTR14 LTR ERV1 6 44 -338 7 1697 3095 23 0 0 chr5 145798857 145799203 -6738056 - ORR1A0 LTR MaLR 0 346 1 7 1697 14663 46 2 1 chr5 145799203 145800992 -6736267 - ORR1A0-int LTR MaLR 0 1792 1 7 1697 2996 26 12 0 chr5 145800992 145801334 -6735925 - ORR1A0 LTR MaLR 0 346 1 7 1697 1454 152 72 26 chr5 145801334 145801510 -6735749 + RLTR14 LTR ERV1 45 231 -151 7 1697 234 0 0 0 chr5 145801510 145801536 -6735723 + (TG)n Simple_repeat Simple_repeat 2 27 0 7 1697 1454 152 72 26 chr5 145801536 145801617 -6735642 + RLTR14 LTR ERV1 232 321 -61 7 1697 731 207 0 40 chr5 145802122 145802273 -6734986 - B1_Mur1 SINE Alu -2 147 3 7 1697 890 207 27 0 chr5 145802633 145802821 -6734438 - B3 SINE B2 -19 197 5 7 1697 218 231 0 15 chr5 145802824 145802890 -6734369 + (TAA)n Simple_repeat Simple_repeat 1 65 0 7 1697 294 29 0 0 chr5 145803176 145803211 -6734048 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1697 21773 139 32 62 chr5 145807779 145809501 -6727758 + Lx5 LINE L1 420 2060 -3817 7 1697 642 109 0 0 chr5 145809501 145809602 -6727657 + (CA)n Simple_repeat Simple_repeat 1 101 0 7 1697 21773 170 35 30 chr5 145809602 145809703 -6727556 + Lx5 LINE L1 2061 2148 -3729 7 1697 1227 41 0 0 chr5 145809703 145809849 -6727410 + B1_Mm SINE Alu 2 147 0 7 1697 21773 170 35 30 chr5 145809849 145810726 -6726533 + Lx5 LINE L1 2149 3057 -2820 7 1697 312 27 0 0 chr5 145810726 145810763 -6726496 + (CAG)n Simple_repeat Simple_repeat 2 38 0 7 1697 21773 170 35 30 chr5 145810763 145812339 -6724920 + Lx5 LINE L1 3058 4631 -1246 7 1697 207 49 73 0 chr5 145812339 145812380 -6724879 + (CAA)n Simple_repeat Simple_repeat 2 45 0 7 1697 21773 185 44 19 chr5 145812380 145814705 -6722554 + Lx5 LINE L1 4632 7050 0 7 1697 245 291 0 0 chr5 145814858 145814913 -6722346 + B4A SINE B4 15 69 -223 7 1697 284 185 158 12 chr5 145814927 145815009 -6722250 - ZP3AR Satellite Satellite -117 95 2 7 1697 589 280 13 6 chr5 145815346 145815504 -6721755 - B3 SINE B2 -10 206 48 7 1697 307 118 13 13 chr5 145815505 145815582 -6721677 + (TTTTTG)n Simple_repeat Simple_repeat 2 78 0 7 1697 1137 54 0 45 chr5 145815586 145815740 -6721519 - B1_Mm SINE Alu 0 147 1 7 1697 345 203 0 0 chr5 145815740 145815804 -6721455 - B3 SINE B2 -152 64 1 7 1697 403 262 0 10 chr5 145815838 145815942 -6721317 - RSINE1 SINE B4 -29 136 34 7 1697 1189 109 11 0 chr5 145816042 145816217 -6721042 - L1_Mm LINE L1 -635 5248 5072 7 1697 7472 95 21 20 chr5 145816220 145817678 -6719581 + L1_Mus3 LINE L1 5153 6637 -1 7 1697 318 156 0 36 chr5 145817700 145817767 -6719492 + PB1D9 SINE Alu 5 66 -82 7 1697 3045 71 20 0 chr5 145818011 145818403 -6718856 + MTB LTR MaLR 1 400 0 7 1697 1453 274 38 0 chr5 145819134 145819507 -6717752 + Lx5 LINE L1 6664 7050 0 7 1697 283 267 77 29 chr5 145819527 145819631 -6717628 - B4 SINE B4 -183 109 1 7 1697 568 276 14 15 chr5 145819661 145819830 -6717429 + B3A SINE B2 2 169 -47 7 1697 2076 109 105 11 chr5 145820138 145820501 -6716758 - RLTR9D LTR ERVK -6 397 1 7 1697 238 279 16 0 chr5 145820502 145820563 -6716696 - ID SINE ID -162 62 1 7 1697 722 272 62 11 chr5 145820523 145820836 -6716423 - ZP3AR Satellite Satellite -24 328 1 7 1697 23 0 0 0 chr5 145820865 145820888 -6716371 + AT_rich Low_complexity Low_complexity 1 23 0 8 1697 644 134 169 0 chr5 145821052 145821194 -6716065 + B2_Mm2 SINE B2 15 180 -15 8 1697 630 96 0 0 chr5 145821194 145821298 -6715961 + (GA)n Simple_repeat Simple_repeat 1 104 0 8 1697 350 208 135 0 chr5 145821598 145821694 -6715565 + PB1D10 SINE Alu 1 109 -8 8 1697 22 0 0 0 chr5 145822089 145822111 -6715148 + AT_rich Low_complexity Low_complexity 1 22 0 8 1697 1076 81 0 0 chr5 145822777 145822913 -6714346 - B1_Mus1 SINE Alu -12 136 1 8 1697 1068 62 0 0 chr5 145822982 145823127 -6714132 + (TG)n Simple_repeat Simple_repeat 2 146 0 8 1697 453 304 39 43 chr5 145823127 145823357 -6713902 - B4A SINE B4 -23 269 41 8 1697 929 271 55 151 chr5 145823373 145823811 -6713448 + MTD LTR MaLR 9 404 -15 8 1697 2814 126 5 0 chr5 145823847 145824275 -6712984 - L1_Mus3 LINE L1 -3 6635 6206 8 1697 389 145 0 0 chr5 145824275 145824337 -6712922 + L1_Mm LINE L1 3843 3904 -1979 8 1697 1762 98 97 40 chr5 145824337 145824666 -6712593 - RLTR10B2 LTR ERVK 0 365 18 8 1697 265 56 0 0 chr5 145824680 145824716 -6712543 - RLTR10B2 LTR ERVK -256 36 1 8 1697 3788 106 0 114 chr5 145824716 145825411 -6711848 + L1_Mm LINE L1 3899 4514 -1369 8 1697 807 163 0 0 chr5 145825517 145825664 -6711595 + CT-rich Low_complexity Low_complexity 3 149 0 8 1697 596 195 0 68 chr5 145825677 145825809 -6711450 - B1_Mur2 SINE Alu -20 129 7 8 1697 349 339 0 53 chr5 145825692 145825823 -6711436 - B4 SINE B4 -88 204 81 8 1697 356 151 0 0 chr5 145826046 145826099 -6711160 - ID_B1 SINE B4 -21 203 151 8 1697 210 178 22 0 chr5 145826715 145826760 -6710499 + (CA)n Simple_repeat Simple_repeat 2 47 0 8 1697 312 210 12 56 chr5 145826969 145827082 -6710177 - PB1D9 SINE Alu -7 113 1 8 1697 1159 92 92 6 chr5 145827094 145827268 -6709991 - B2_Mm2 SINE B2 -5 190 2 8 1697 1321 38 37 27 chr5 145827452 145827640 -6709619 + B2_Mm2 SINE B2 6 195 0 8 1697 621 247 80 7 chr5 145827649 145827800 -6709459 + B3 SINE B2 2 163 -53 8 1697 186 71 0 0 chr5 145827800 145827828 -6709431 + (TA)n Simple_repeat Simple_repeat 2 29 0 8 1697 606 211 0 0 chr5 145827944 145828058 -6709201 + RSINE1 SINE B4 15 128 -37 8 1697 656 56 11 0 chr5 145828187 145828276 -6708983 + (TA)n Simple_repeat Simple_repeat 2 91 0 8 1697 240 172 0 0 chr5 145828706 145828764 -6708495 + (CA)n Simple_repeat Simple_repeat 1 58 0 8 1697 28 29 0 0 chr5 145828764 145828799 -6708460 + AT_rich Low_complexity Low_complexity 1 35 0 8 1697 1150 95 0 0 chr5 145828805 145828952 -6708307 + B1_Mus1 SINE Alu 2 148 0 8 1697 22 35 0 0 chr5 145829030 145829059 -6708200 + AT_rich Low_complexity Low_complexity 1 29 0 8 1697 906 266 0 24 chr5 145829063 145829275 -6707984 + B3 SINE B2 1 207 -9 8 1697 510 336 27 0 chr5 145829461 145829607 -6707652 + RSINE1 SINE B4 2 151 -14 8 1697 427 248 35 18 chr5 145830058 145830199 -6707060 - B1F SINE Alu -1 148 1 8 1697 249 33 0 0 chr5 145830212 145830242 -6707017 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 8 1697 474 208 0 56 chr5 145830254 145830361 -6706898 - B1_Mur4 SINE Alu -37 113 13 8 1697 275 262 94 12 chr5 145830285 145830370 -6706889 - B4A SINE B4 -116 176 85 8 1697 243 0 0 0 chr5 145830381 145830408 -6706851 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1697 405 39 0 0 chr5 145830408 145830458 -6706801 + (GA)n Simple_repeat Simple_repeat 1 51 0 8 1697 459 256 124 0 chr5 145830458 145830595 -6706664 - B3A SINE B2 -44 154 1 8 1697 380 294 37 0 chr5 145831219 145831328 -6705931 - RSINE1 SINE B4 0 165 53 8 1697 604 236 49 21 chr5 145831329 145831472 -6705787 - RSINE1 SINE B4 -17 148 2 8 1697 327 25 0 0 chr5 145831493 145831533 -6705726 + (TCTG)n Simple_repeat Simple_repeat 2 41 0 8 1697 592 250 35 7 chr5 145831548 145831693 -6705566 - RSINE1 SINE B4 -15 150 2 8 1697 526 295 8 120 chr5 145831801 145832059 -6705200 - B4 SINE B4 -63 229 1 8 1697 447 256 32 0 chr5 145832341 145832466 -6704793 + B3 SINE B2 57 185 -31 8 1697 360 0 0 0 chr5 145832467 145832507 -6704752 + (TG)n Simple_repeat Simple_repeat 2 41 0 8 1697 344 295 0 10 chr5 145832595 145832691 -6704568 + PB1D10 SINE Alu 9 103 -14 8 1697 214 305 85 0 chr5 145832737 145832796 -6704463 + ID2 SINE ID 14 77 -6 8 1697 198 0 0 0 chr5 145832859 145832881 -6704378 + (TA)n Simple_repeat Simple_repeat 2 23 0 8 1697 340 194 32 0 chr5 145832889 145832982 -6704277 + GA-rich Low_complexity Low_complexity 6 101 0 8 1697 1048 201 19 5 chr5 145833169 145833379 -6703880 - B3 SINE B2 -1 215 3 8 1697 471 194 0 0 chr5 145833478 145833581 -6703678 + (TG)n Simple_repeat Simple_repeat 1 103 0 8 1697 556 229 144 60 chr5 145833583 145833750 -6703509 - B3A SINE B2 -16 182 2 8 1697 1004 254 71 149 chr5 145833750 145834158 -6703101 + MTEa LTR MaLR 3 378 -1 8 1697 429 187 76 11 chr5 145834654 145834746 -6702513 - ID_B1 SINE B4 0 224 127 8 1697 1062 15 81 0 chr5 145834911 145835047 -6702212 + B1_Mm SINE Alu 1 147 0 8 1697 871 292 19 23 chr5 145835065 145835328 -6701931 + B4A SINE B4 24 285 -7 8 1697 327 49 0 0 chr5 145835356 145835397 -6701862 + (CA)n Simple_repeat Simple_repeat 2 42 0 8 1697 201 255 0 38 chr5 145835471 145835524 -6701735 + (CATA)n Simple_repeat Simple_repeat 4 54 0 8 1697 360 0 0 0 chr5 145835622 145835662 -6701597 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1697 1038 217 37 12 chr5 145835944 145836124 -6701135 + ORR1E LTR MaLR 2 185 -174 8 1697 459 0 0 0 chr5 145836124 145836175 -6701084 + (TC)n Simple_repeat Simple_repeat 1 51 0 8 1697 1038 222 41 37 chr5 145836175 145836267 -6700992 + ORR1E LTR MaLR 181 263 -107 8 1697 289 259 0 81 chr5 145836306 145836478 -6700781 + C-rich Low_complexity Low_complexity 3 160 0 8 1697 443 201 9 16 chr5 145836569 145836692 -6700567 + ORR1E LTR MaLR 219 385 -34 8 1697 219 36 0 0 chr5 145836692 145836720 -6700539 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8 1697 1133 28 0 0 chr5 145836739 145836881 -6700378 - B1_Mus1 SINE Alu 0 148 7 8 1697 405 207 8 90 chr5 145836784 145836906 -6700353 - MT2B LTR ERVL -344 257 146 8 1697 197 100 0 48 chr5 145837188 145837230 -6700029 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 8 1697 262 217 117 0 chr5 145837239 145837299 -6699960 - B3A SINE B2 -48 150 84 8 1697 1054 74 7 7 chr5 145837294 145837444 -6699815 + B2_Mm2 SINE B2 37 186 -9 8 1697 586 55 0 149 chr5 145837518 145837625 -6699634 - B2_Mm2 SINE B2 -103 92 2 8 1697 390 242 30 34 chr5 145837648 145837817 -6699442 - B3A SINE B2 -14 181 12 8 1697 232 393 64 24 chr5 145837869 145837888 -6699371 + B1F1 SINE Alu 10 139 -10 8 1697 410 311 19 0 chr5 145837888 145837994 -6699265 + ID_B1 SINE B4 107 214 -10 8 1697 341 288 0 0 chr5 145838268 145838348 -6698911 + PB1D10 SINE Alu 2 81 -36 8 1697 705 140 0 130 chr5 145838350 145838509 -6698750 + B1_Mur3 SINE Alu 1 134 -15 8 1697 234 0 0 0 chr5 145838533 145838559 -6698700 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8 1697 817 191 0 13 chr5 145838795 145838944 -6698315 + B1_Mus1 SINE Alu 1 147 -1 8 1697 347 279 12 0 chr5 145839220 145839306 -6697953 - ZP3AR Satellite Satellite -74 138 52 8 1697 655 217 59 18 chr5 145839367 145839536 -6697723 - MLT2B4 LTR ERVL -367 189 14 8 1697 729 325 8 8 chr5 145839632 145839874 -6697385 + Tigger5 DNA MER2_type 1 242 -2164 8 1697 538 202 45 131 chr5 145839898 145840097 -6697162 + MTE2a LTR MaLR 1 182 -197 8 1697 362 196 10 107 chr5 145840158 145840261 -6696998 - RMER6A LTR ERVK -26 730 638 8 1697 239 245 107 48 chr5 145840250 145840353 -6696906 + RMER12 LTR ERVK 742 850 -472 8 1697 336 281 78 152 chr5 145840331 145840629 -6696630 - B4 SINE B4 -11 281 38 8 1697 1398 51 0 6 chr5 145840629 145840805 -6696454 - B2_Mm2 SINE B2 -19 176 2 8 1697 336 279 85 167 chr5 145840805 145840842 -6696417 - B4 SINE B4 -255 37 2 8 1697 1364 75 38 0 chr5 145841198 145841384 -6695875 + B2_Mm2 SINE B2 3 195 0 8 1697 593 246 0 0 chr5 145841473 145841607 -6695652 + B1_Mur1 SINE Alu 1 134 -15 8 1697 339 111 37 0 chr5 145841667 145841721 -6695538 + MTEb LTR MaLR 19 74 -305 8 1697 505 284 20 35 chr5 145841757 145841954 -6695305 + MTEb LTR MaLR 184 377 -2 8 1697 1074 101 6 0 chr5 145842624 145842782 -6694477 - B2_Mm2 SINE B2 -34 161 3 8 1697 663 258 57 9 chr5 145842789 145843000 -6694259 - ID_B1 SINE B4 -1 223 3 8 1697 477 259 51 34 chr5 145843064 145843240 -6694019 + RMER5 LTR ERV1 218 396 -138 8 1697 523 239 14 36 chr5 145843242 145843381 -6693878 + RSINE1 SINE B4 1 136 -29 8 1697 791 59 0 8 chr5 145843385 145843504 -6693755 + (CA)n Simple_repeat Simple_repeat 1 118 0 8 1697 637 223 89 12 chr5 145844030 145844198 -6693061 + B3A SINE B2 2 182 -16 8 1697 1117 68 0 0 chr5 145844219 145844366 -6692893 - B1_Mus1 SINE Alu 0 148 2 8 1697 216 0 0 0 chr5 145844377 145844401 -6692858 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 8 1697 227 322 119 17 chr5 145845398 145845577 -6691682 + MIR SINE MIR 52 244 -18 8 1697 189 325 104 9 chr5 145845643 145845758 -6691501 + L2a LINE L2 3282 3407 -19 8 1697 1140 54 0 0 chr5 145846253 145846400 -6690859 + B1_Mus2 SINE Alu 1 147 0 8 1697 216 97 0 0 chr5 145846400 145846431 -6690828 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1697 454 151 0 44 chr5 145847047 145847137 -6690122 - PB1D9 SINE Alu -1 119 34 8 1697 466 258 112 35 chr5 145847667 145847836 -6689423 - B3A SINE B2 -16 182 1 8 1697 532 274 88 7 chr5 145847898 145848034 -6689225 - RSINE1 SINE B4 -6 159 13 9 1697 522 236 0 17 chr5 145848032 145848160 -6689099 - PB1D9 SINE Alu -23 126 11 9 1697 1101 89 0 0 chr5 145848204 145848350 -6688909 + B1_Mus2 SINE Alu 2 147 0 9 1697 213 39 0 0 chr5 145848350 145848376 -6688883 + (A)n Simple_repeat Simple_repeat 1 26 0 9 1697 668 216 0 0 chr5 145848379 145848504 -6688755 - B1_Mur1 SINE Alu -18 131 7 9 1697 21 0 0 0 chr5 145848545 145848566 -6688693 + AT_rich Low_complexity Low_complexity 1 21 0 9 1697 1001 45 105 0 chr5 145848566 145848699 -6688560 - B1_Mm SINE Alu 0 147 1 9 1697 1084 100 61 0 chr5 145848699 145848878 -6688381 - B2_Mm1a SINE B2 -2 191 1 9 1697 1140 124 11 0 chr5 145848880 145849057 -6688202 - B2_Mm1t SINE B2 -14 179 1 9 1697 861 218 10 54 chr5 145849164 145849368 -6687891 + B3A SINE B2 1 195 -3 9 1697 460 316 0 0 chr5 145849481 145849598 -6687661 - ID_B1 SINE B4 -24 200 84 9 1697 396 219 115 0 chr5 145849819 145849915 -6687344 + PB1D10 SINE Alu 2 108 -9 9 1697 549 204 10 0 chr5 145849925 145850028 -6687231 + B1_Mur2 SINE Alu 25 128 -21 9 1697 325 299 119 44 chr5 145850037 145850264 -6686995 - L1MC5 LINE L1 -214 7747 7504 9 1697 222 281 35 0 chr5 145850273 145850330 -6686929 - B1F2 SINE Alu -87 62 4 9 1697 290 321 69 45 chr5 145850474 145850764 -6686495 - B4 SINE B4 -22 270 11 9 1697 283 263 41 31 chr5 145850976 145851074 -6686185 - PB1D9 SINE Alu -5 115 17 9 1697 304 219 65 0 chr5 145851240 145851334 -6685925 - ID4_ SINE ID -52 100 2 9 1697 314 321 61 0 chr5 145851490 145851621 -6685638 - L1MC5 LINE L1 -668 7374 7236 9 1697 1101 70 0 0 chr5 145851819 145851961 -6685298 - B1_Mus1 SINE Alu -6 142 1 9 1697 1000 225 13 69 chr5 145852145 145852451 -6684808 - B4A SINE B4 0 292 4 9 1697 411 21 0 0 chr5 145852452 145852500 -6684759 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1697 243 254 0 0 chr5 145852525 145852580 -6684679 - ID4_ SINE ID -19 64 10 9 1697 527 187 28 0 chr5 145852756 145852863 -6684396 - PB1D9 SINE Alu -10 110 1 9 1697 655 225 14 0 chr5 145852881 145853019 -6684240 - B1_Mus1 SINE Alu -8 140 1 9 1697 266 174 0 0 chr5 145853124 145853170 -6684089 + B1F SINE Alu 12 57 -92 9 1697 255 105 17 34 chr5 145853550 145853609 -6683650 + CT-rich Low_complexity Low_complexity 3 60 0 9 1697 654 195 16 16 chr5 145853613 145853738 -6683521 - B1_Mur2 SINE Alu -6 143 19 9 1697 264 229 0 16 chr5 145854444 145854506 -6682753 + ID_B1 SINE B4 121 181 -43 9 1697 191 114 23 0 chr5 145854507 145854551 -6682708 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 9 1697 1156 14 0 14 chr5 145854560 145854702 -6682557 + B1_Mus1 SINE Alu 1 140 -8 9 1697 355 198 139 0 chr5 145854870 145854956 -6682303 + B4A SINE B4 1 98 -194 9 1697 1053 44 0 0 chr5 145855311 145855447 -6681812 - B1_Mus2 SINE Alu 0 147 12 9 1697 570 226 60 0 chr5 145855813 145855946 -6681313 - B1_Mur1 SINE Alu 0 149 9 9 1697 307 200 129 113 chr5 145855842 145855966 -6681293 - MT2B LTR ERVL -337 264 139 9 1697 670 188 51 0 chr5 145855987 145856125 -6681134 - B1_Mus1 SINE Alu 0 148 4 9 1697 720 315 40 18 chr5 145856153 145856425 -6680834 + B4A SINE B4 2 279 -13 9 1697 240 86 0 0 chr5 145856499 145856534 -6680725 + (TG)n Simple_repeat Simple_repeat 2 36 0 9 1697 577 242 45 0 chr5 145856561 145856693 -6680566 + ID_B1 SINE B4 84 221 -3 9 1697 307 225 21 47 chr5 145857296 145857417 -6679842 + CT-rich Low_complexity Low_complexity 1 117 0 9 1697 305 249 60 80 chr5 145857597 145857715 -6679544 + PB1D10 SINE Alu 2 144 -5 9 1697 381 50 0 62 chr5 145857826 145857890 -6679369 + B1_Mm SINE Alu 88 147 0 9 1697 337 302 60 0 chr5 145858328 145858406 -6678853 + B4A SINE B4 1 85 -207 9 1697 252 214 18 0 chr5 145858406 145858453 -6678806 + PB1D9 SINE Alu 1 48 -72 9 1697 254 200 18 0 chr5 145858453 145858500 -6678759 + PB1D9 SINE Alu 1 48 -72 9 1697 252 214 18 0 chr5 145858500 145858547 -6678712 + PB1D9 SINE Alu 1 48 -72 9 1697 233 214 18 0 chr5 145858547 145858603 -6678656 + PB1D9 SINE Alu 1 57 -63 9 1697 594 266 7 21 chr5 145858576 145858718 -6678541 + ID_B1 SINE B4 67 206 -18 9 1697 701 173 59 2 chr5 145858950 145859127 -6678132 - B3A SINE B2 0 193 2 9 1697 286 268 45 12 chr5 145859134 145859229 -6678030 - PB1D10 SINE Alu -41 108 4 9 1697 1153 96 6 6 chr5 145859447 145859615 -6677644 + B2_Mm2 SINE B2 1 168 -27 9 1697 402 99 316 26 chr5 145859694 145859808 -6677451 + B2_Mm2 SINE B2 49 195 0 9 1697 1081 160 90 28 chr5 145859950 145860162 -6677097 + URR1B DNA MER1_type 1 225 0 9 1697 347 258 7 12 chr5 145860246 145860364 -6676895 + ID4 SINE ID 13 131 -21 9 1697 180 0 0 0 chr5 145860514 145860534 -6676725 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 9 1697 867 157 0 0 chr5 145860534 145860668 -6676591 - B1_Mus1 SINE Alu -13 135 2 9 1697 528 59 0 0 chr5 145861125 145861193 -6676066 + (TG)n Simple_repeat Simple_repeat 1 68 0 9 1697 965 247 51 8 chr5 145861195 145861448 -6675811 - B4A SINE B4 -28 264 1 9 1697 421 214 0 88 chr5 145861461 145861574 -6675685 - PB1D9 SINE Alu -6 114 12 9 1697 417 348 33 19 chr5 145862411 145862622 -6674637 - RMER15 LTR ERVL -15 560 347 9 1697 394 193 148 0 chr5 145862938 145863026 -6674233 + PB1D10 SINE Alu 6 106 -11 9 1697 2621 47 0 6 chr5 145863023 145863363 -6673896 - ORR1A1 LTR MaLR -8 338 1 9 1697 660 111 0 0 chr5 145863508 145863607 -6673652 + (GA)n Simple_repeat Simple_repeat 2 100 0 9 1697 220 209 0 23 chr5 145863612 145863656 -6673603 + GA-rich Low_complexity Low_complexity 3 45 0 9 1697 213 175 0 0 chr5 145863963 145864003 -6673256 + C-rich Low_complexity Low_complexity 5 44 0 9 1697 1292 68 0 38 chr5 145864006 145864018 -6673241 - B2_Mm2 SINE B2 -18 177 168 9 1697 1186 48 0 0 chr5 145864018 145864165 -6673094 + B1_Mus1 SINE Alu 2 148 0 9 1697 1292 68 0 38 chr5 145864165 145864335 -6672924 - B2_Mm2 SINE B2 -28 167 2 9 1697 244 290 0 68 chr5 145864395 145864469 -6672790 - PB1D10 SINE Alu -9 108 40 9 1697 395 279 45 9 chr5 145864485 145864597 -6672662 + PB1D10 SINE Alu 1 116 -1 9 1697 297 0 0 0 chr5 145864671 145864704 -6672555 + (TC)n Simple_repeat Simple_repeat 1 33 0 9 1697 300 138 0 0 chr5 145864704 145864756 -6672503 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1697 659 183 6 112 chr5 145865969 145866102 -6671157 + B1_Mur1 SINE Alu 2 123 -26 9 1697 2261 142 81 7 chr5 145866102 145866536 -6670723 - RMER4A LTR ERVK 0 466 1 9 1697 659 183 6 112 chr5 145866536 145866562 -6670697 + B1_Mur1 SINE Alu 124 144 -5 9 1697 304 161 0 0 chr5 145866692 145866748 -6670511 + B1F1 SINE Alu 2 57 -92 9 1697 490 289 15 0 chr5 145866760 145866895 -6670364 + RSINE1 SINE B4 5 141 -24 9 1697 366 186 0 0 chr5 145867112 145867182 -6670077 - ID4_ SINE ID -13 70 1 9 1697 388 314 85 0 chr5 145867511 145867664 -6669595 - ID_B1 SINE B4 -55 169 4 9 1697 283 246 0 0 chr5 145867681 145867738 -6669521 - B1F1 SINE Alu -8 141 85 9 1697 398 287 11 0 chr5 145868357 145868451 -6668808 + PB1D7 SINE Alu 14 108 -12 9 1697 856 69 50 0 chr5 145868484 145868643 -6668616 + (CA)n Simple_repeat Simple_repeat 2 168 0 9 1697 677 184 144 11 chr5 145868667 145868854 -6668405 + B3 SINE B2 5 216 0 9 1697 365 258 167 0 chr5 145868864 145868984 -6668275 + B1_Mur1 SINE Alu 3 142 -7 9 1697 204 136 0 64 chr5 145869448 145869495 -6667764 + T-rich Low_complexity Low_complexity 4 47 0 9 1697 265 254 42 0 chr5 145869776 145869847 -6667412 + PB1D10 SINE Alu 1 74 -43 9 1697 511 224 41 0 chr5 145870195 145870293 -6666966 + B1F1 SINE Alu 35 136 -13 9 1697 702 267 84 0 chr5 145870380 145870582 -6666677 - ID_B1 SINE B4 -1 223 5 9 1697 273 143 0 0 chr5 145870992 145871034 -6666225 - B1F2 SINE Alu -83 66 25 9 1697 274 235 11 23 chr5 145871690 145871777 -6665482 + PB1D10 SINE Alu 11 96 -21 9 1697 230 209 0 0 chr5 145871888 145871931 -6665328 - RSINE1 SINE B4 -25 140 98 9 1697 988 93 249 6 chr5 145871984 145872157 -6665102 + B3 SINE B2 1 215 -1 9 1697 225 203 232 0 chr5 145872177 145872246 -6665013 + B4 SINE B4 2 86 -206 9 1697 369 193 119 56 chr5 145872257 145872383 -6664876 + B1_Mm SINE Alu 1 134 -13 9 1697 828 266 35 0 chr5 145872388 145872591 -6664668 + B3 SINE B2 7 216 0 9 1697 324 295 338 32 chr5 145872607 145872618 -6664641 + B4A SINE B4 81 90 -202 9 1697 601 188 8 17 chr5 145872618 145872737 -6664522 + PB1D9 SINE Alu 3 120 0 9 1697 324 295 247 32 chr5 145872737 145872879 -6664380 + B4A SINE B4 91 267 -25 9 1697 204 40 0 0 chr5 145872881 145872906 -6664353 + (CA)n Simple_repeat Simple_repeat 2 26 0 9 1697 303 243 29 0 chr5 145873845 145873915 -6663344 + ID4 SINE ID 3 74 -9 9 1697 183 80 0 0 chr5 145873923 145873948 -6663311 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1697 715 166 13 52 chr5 145874035 145874188 -6663071 + B1_Mur3 SINE Alu 3 149 0 9 1697 327 49 0 0 chr5 145874213 145874254 -6663005 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1697 346 260 0 0 chr5 145874294 145874371 -6662888 - RSINE1 SINE B4 -86 79 3 9 1697 619 226 15 0 chr5 145874376 145874509 -6662750 - ID_B1 SINE B4 0 224 90 9 1697 223 309 153 9 chr5 145875873 145875984 -6661275 + MIRb SINE MIR 103 229 -39 1 1697 1021 45 0 0 chr5 145876330 145876463 -6660796 - B1_Mus2 SINE Alu 0 147 15 1 1697 399 89 0 0 chr5 145876535 145876591 -6660668 + (TC)n Simple_repeat Simple_repeat 1 56 0 1 1697 260 239 28 14 chr5 145876594 145876605 -6660654 - MT2B2 LTR ERVL -333 251 179 1 1697 315 164 164 0 chr5 145876605 145876666 -6660593 - B1_Mur4 SINE Alu -64 86 16 1 1697 243 138 0 27 chr5 145876731 145876787 -6660472 - BC1_Mm scRNA scRNA -25 58 5 1 1697 562 214 75 7 chr5 145877602 145877748 -6659511 - RSINE1 SINE B4 -8 157 2 1 1697 180 176 0 0 chr5 145877749 145877783 -6659476 + (CCTA)n Simple_repeat Simple_repeat 1 34 0 1 1697 321 169 0 0 chr5 145877784 145877843 -6659416 + (TCCG)n Simple_repeat Simple_repeat 2 60 0 1 1697 215 229 0 0 chr5 145877856 145877904 -6659355 - PB1 SINE Alu -14 113 66 1 1697 815 43 43 0 chr5 145878257 145878373 -6658886 + ZP3AR Satellite Satellite 28 148 -64 1 1697 363 232 12 0 chr5 145878373 145878455 -6658804 + ID4 SINE ID 1 83 0 1 1697 297 253 52 52 chr5 145878484 145878580 -6658679 - PB1D10 SINE Alu -21 96 1 1 1697 823 119 114 45 chr5 145878597 145878773 -6658486 + B2_Mm2 SINE B2 1 188 -7 1 1697 215 133 0 22 chr5 145879307 145879353 -6657906 + CT-rich Low_complexity Low_complexity 6 50 0 1 1697 598 176 38 8 chr5 145879362 145879494 -6657765 - B1_Mur2 SINE Alu -13 136 1 1 1697 843 50 0 16 chr5 145879935 145880058 -6657201 - B1_Mm SINE Alu 0 147 27 1 1697 289 194 109 64 chr5 145879980 145880090 -6657169 - RLTR25B LTR ERVK -519 509 395 1 1697 702 138 65 0 chr5 145880136 145880259 -6657000 - B1_Mus2 SINE Alu 0 147 17 1 1697 375 259 26 43 chr5 145880171 145880288 -6656971 - MT2B LTR ERVL -337 264 150 1 1697 420 231 9 37 chr5 145880386 145880494 -6656765 - B3A SINE B2 -5 193 89 1 1697 1359 70 38 0 chr5 145880867 145881053 -6656206 - B2_Mm2 SINE B2 0 195 3 1 1697 679 241 19 6 chr5 145881104 145881263 -6655996 - RSINE1 SINE B4 -2 163 3 1 1697 529 246 126 40 chr5 145881311 145881510 -6655749 - ID_B1 SINE B4 -7 217 2 1 1697 269 200 222 0 chr5 145881516 145881606 -6655653 - PB1D10 SINE Alu -6 111 2 1 1697 442 284 0 18 chr5 145882868 145882979 -6654280 + PB1D10 SINE Alu 9 117 0 1 1697 439 271 78 19 chr5 145882980 145883134 -6654125 + RSINE1 SINE B4 3 165 0 1 1698 629 229 21 14 chr5 145883615 145883757 -6653502 + RSINE1 SINE B4 2 144 -21 1 1698 245 325 98 58 chr5 145883757 145883788 -6653471 + B2_Mm2 SINE B2 1 180 -15 1 1698 1113 62 7 0 chr5 145883796 145883941 -6653318 - B1_Mus2 SINE Alu 0 147 2 1 1698 606 276 63 29 chr5 145884136 145884344 -6652915 + ZP3AR Satellite Satellite 1 215 -4 1 1698 252 259 0 0 chr5 145884301 145884359 -6652900 + ID4 SINE ID 1 58 -25 1 1698 553 273 6 72 chr5 145884967 145885133 -6652126 - ID_B1 SINE B4 -7 217 63 1 1698 278 151 38 0 chr5 145885166 145885219 -6652040 - PB1D10 SINE Alu -8 109 55 1 1698 297 180 49 0 chr5 145886049 145886110 -6651149 - PB1D10 SINE Alu 0 117 54 1 1698 543 226 67 15 chr5 145887040 145887175 -6650084 + RSINE1 SINE B4 19 160 -5 1 1698 237 33 0 0 chr5 145888927 145888957 -6648302 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1698 1101 68 7 40 chr5 145889054 145889206 -6648053 + B1_Mm SINE Alu 1 147 0 1 1698 184 329 71 0 chr5 145893278 145893348 -6643911 - MIRm SINE MIR -132 144 70 1 1698 1444 71 16 16 chr5 145894220 145894407 -6642852 + B2_Mm2 SINE B2 2 188 -7 1 1698 674 241 15 70 chr5 145894423 145894624 -6642635 + Lx5 LINE L1 6838 7027 -23 1 1698 228 350 7 42 chr5 145895176 145895319 -6641940 + L2b LINE L2 2955 3092 -283 1 1698 474 246 32 24 chr5 145895613 145895738 -6641521 + RSINE1 SINE B4 21 146 -19 1 1698 227 333 47 9 chr5 145895769 145895875 -6641384 + PB1D10 SINE Alu 1 110 -7 1 1698 189 0 0 0 chr5 145896497 145896518 -6640741 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1698 1139 83 7 0 chr5 145896550 145896694 -6640565 - B1_Mus2 SINE Alu -1 146 2 1 1698 372 184 22 22 chr5 145896718 145896810 -6640449 + B1F SINE Alu 24 120 0 1 1698 452 18 0 0 chr5 145896850 145896907 -6640352 + BC1_Mm scRNA scRNA 20 76 -76 1 1698 252 0 0 0 chr5 145896907 145896935 -6640324 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1698 1203 36 0 0 chr5 145896947 145897087 -6640172 + B1_Mus1 SINE Alu 3 142 -6 1 1698 380 154 15 97 chr5 145898136 145898247 -6639012 + B1_Mur2 SINE Alu 20 121 -29 1 1698 204 368 75 0 chr5 145898309 145898415 -6638844 + MIRb SINE MIR 25 138 -130 1 1698 742 214 57 75 chr5 145898679 145898891 -6638368 + B3 SINE B2 2 209 -7 1 1698 183 100 0 0 chr5 145899364 145899394 -6637865 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 1 1698 236 352 102 32 chr5 145899894 145900114 -6637145 - MIR SINE MIR -8 254 37 1 1698 249 342 58 115 chr5 145900174 145900383 -6636876 - MIRm SINE MIR -21 247 51 1 1698 180 77 0 0 chr5 145900856 145900882 -6636377 + (CGG)n Simple_repeat Simple_repeat 1 26 0 1 1698 245 309 77 9 chr5 145902149 145902270 -6634989 - MIR3 SINE MIR -110 158 34 1 1698 321 187 9 36 chr5 145902315 145902426 -6634833 + CT-rich Low_complexity Low_complexity 4 111 0 1 1698 487 326 0 0 chr5 145902426 145902558 -6634701 - ID_B1 SINE B4 0 224 93 1 1698 632 228 7 35 chr5 145903706 145903847 -6633412 - B1_Mur2 SINE Alu -12 137 1 1 1698 504 256 7 29 chr5 145903879 145904016 -6633243 - B3A SINE B2 0 198 65 1 1698 557 214 49 46 chr5 145904206 145904352 -6632907 - MTD LTR MaLR 0 419 235 1 1698 322 68 0 0 chr5 145904352 145904396 -6632863 + B3A SINE B2 4 47 -151 1 1698 196 203 40 80 chr5 145904653 145904728 -6632531 + L2 LINE L2 2279 2350 -1069 1 1698 511 263 77 19 chr5 145904729 145904884 -6632375 - RSINE1 SINE B4 0 165 2 1 1698 470 264 138 0 chr5 145904890 145905069 -6632190 - B3 SINE B2 -1 215 1 1 1698 404 370 12 0 chr5 145905071 145905233 -6632026 - Kanga2_a DNA Tc2 -531 357 194 1 1698 1610 38 0 16 chr5 145905436 145905625 -6631634 - B2_Mm1t SINE B2 -7 186 1 1 1698 189 244 22 0 chr5 145905821 145905866 -6631393 + L2 LINE L2 384 429 -2990 1 1698 407 331 36 7 chr5 145905955 145906092 -6631167 - RSINE1 SINE B4 -17 148 8 1 1698 658 160 192 0 chr5 145906147 145906272 -6630987 + B1_Mur3 SINE Alu 1 149 0 1 1698 268 300 34 60 chr5 145906312 145906402 -6630857 + PB1D7 SINE Alu 1 91 -29 1 1698 2913 97 32 14 chr5 145906402 145906839 -6630420 - BGLII_A LTR ERVK 0 445 1 1 1698 268 300 34 60 chr5 145906839 145906865 -6630394 + PB1D7 SINE Alu 92 114 -6 1 1698 450 235 60 9 chr5 145906953 145907069 -6630190 - B1_Mur1 SINE Alu -2 147 26 1 1698 701 221 43 0 chr5 145907093 145907233 -6630026 - B1_Mus2 SINE Alu 0 147 2 1 1698 501 271 30 61 chr5 145908198 145908363 -6628896 + ID_B1 SINE B4 2 161 -63 1 1698 1036 24 78 8 chr5 145909936 145910064 -6627195 + B1_Mus2 SINE Alu 2 138 -9 1 1698 525 258 68 0 chr5 145910104 145910236 -6627023 + B1_Mus1 SINE Alu 1 141 -7 1 1698 284 214 71 0 chr5 145910361 145910431 -6626828 + B4A SINE B4 168 242 -50 1 1698 378 267 248 0 chr5 145910531 145910692 -6626567 + B3 SINE B2 1 201 -15 1 1698 667 111 46 38 chr5 145910698 145910829 -6626430 + B1_Mur4 SINE Alu 12 143 -7 1 1698 1141 124 56 0 chr5 145910841 145911019 -6626240 + B2_Mm2 SINE B2 4 191 -4 1 1698 368 271 75 0 chr5 145911541 145911648 -6625611 + PB1D10 SINE Alu 3 117 0 1 1698 486 228 42 50 chr5 145911651 145911771 -6625488 + B3A SINE B2 2 120 -78 1 1698 676 94 9 36 chr5 145911817 145911927 -6625332 + B2_Mm2 SINE B2 1 107 -88 1 1698 238 245 19 0 chr5 145911988 145912041 -6625218 + A-rich Low_complexity Low_complexity 1 54 0 1 1698 754 154 14 27 chr5 145913578 145913725 -6623534 + B1_Mur4 SINE Alu 2 146 -4 1 1698 268 305 35 94 chr5 145913586 145913756 -6623503 + B4A SINE B4 94 253 -39 1 1698 326 277 117 0 chr5 145913970 145914064 -6623195 - B1_Mur1 SINE Alu -11 138 34 1 1698 432 306 117 0 chr5 145914146 145914198 -6623061 - ID_B1 SINE B4 0 224 163 1 1698 1903 172 138 5 chr5 145914198 145914567 -6622692 + MTC LTR MaLR 3 420 -1 1 1698 432 306 117 0 chr5 145914567 145914694 -6622565 - ID_B1 SINE B4 -62 162 25 1 1698 180 0 0 0 chr5 145914704 145914724 -6622535 + (TCC)n Simple_repeat Simple_repeat 1 20 0 1 1698 745 256 106 0 chr5 145914724 145914904 -6622355 - B3 SINE B2 -16 200 2 1 1698 1238 68 0 22 chr5 145914923 145914939 -6622320 - B2_Mm2 SINE B2 -19 176 162 1 1698 189 0 0 0 chr5 145914939 145914960 -6622299 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1 1698 1238 68 0 22 chr5 145914960 145915122 -6622137 - B2_Mm2 SINE B2 -34 161 2 1 1698 3270 196 162 55 chr5 145916326 145916734 -6620525 + RMER12 LTR ERVK 8 443 -879 1 1698 1290 86 6 17 chr5 145916734 145916750 -6620509 - B2_Mm2 SINE B2 -19 176 161 1 1698 198 0 0 0 chr5 145916750 145916772 -6620487 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1 1698 1290 86 6 17 chr5 145916772 145916932 -6620327 - B2_Mm2 SINE B2 -35 160 2 1 1698 3270 211 149 50 chr5 145916932 145917755 -6619504 + RMER12 LTR ERVK 444 1848 0 1 1698 296 247 39 13 chr5 145917803 145917881 -6619378 + ID4_ SINE ID 4 83 0 1 1698 305 140 0 17 chr5 145917886 145917944 -6619315 + GA-rich Low_complexity Low_complexity 2 58 0 1 1698 1133 108 0 6 chr5 145917951 145918128 -6619131 + (GAA)n Simple_repeat Simple_repeat 2 177 0 1 1698 502 256 62 55 chr5 145918255 145918400 -6618859 + RSINE1 SINE B4 20 165 0 1 1698 357 82 0 0 chr5 145918448 145918497 -6618762 + (TA)n Simple_repeat Simple_repeat 2 50 0 1 1698 1955 141 24 35 chr5 145918502 145918876 -6618383 + RLTR11A LTR ERVK 158 527 -1 1 1698 627 189 75 8 chr5 145919009 145919142 -6618117 + B3A SINE B2 2 143 -55 1 1698 3237 46 15 5 chr5 145919175 145919571 -6617688 + MTB LTR MaLR 1 400 0 1 1698 872 94 3 0 chr5 145921044 145921183 -6616076 + B1_Mus1 SINE Alu 9 150 0 1 1698 353 240 71 20 chr5 145921187 145921285 -6615974 + MT2B LTR ERVL 157 259 -342 1 1698 544 171 67 0 chr5 145921220 145921325 -6615934 + B1_Mur1 SINE Alu 38 149 0 1 1698 666 195 254 0 chr5 145921332 145921501 -6615758 + B3 SINE B2 5 216 0 1 1698 275 125 306 0 chr5 145922501 145922573 -6614686 - B1F2 SINE Alu -55 94 1 1 1698 510 301 20 27 chr5 145922721 145922871 -6614388 + B1F SINE Alu 1 149 0 1 1698 554 325 26 0 chr5 145922889 145923043 -6614216 + RSINE1 SINE B4 8 165 0 1 1698 464 246 53 0 chr5 145923088 145923202 -6614057 + ID_B1 SINE B4 9 128 -96 1 1698 391 267 169 7 chr5 145923517 145923653 -6613606 + ID_B1 SINE B4 67 224 0 1 1698 498 238 47 8 chr5 145923654 145923781 -6613478 + B3A SINE B2 1 132 -66 1 1698 454 344 61 82 chr5 145923799 145924235 -6613024 + RLTR11A LTR ERVK 1 431 -97 1 1698 577 237 164 12 chr5 145924235 145924406 -6612853 + B3A SINE B2 2 198 0 1 1698 454 344 61 82 chr5 145924406 145924479 -6612780 + RLTR11A LTR ERVK 432 499 -29 1 1698 694 171 0 24 chr5 145924481 145924607 -6612652 + B1_Mus2 SINE Alu 25 147 0 1 1698 590 254 81 15 chr5 145924642 145924778 -6612481 + B1_Mus2 SINE Alu 1 145 -2 1 1698 220 363 85 39 chr5 145924780 145924909 -6612350 + B4 SINE B4 70 204 -88 1 1698 537 185 82 25 chr5 145924820 145924942 -6612317 + B1F2 SINE Alu 21 149 0 1 1698 415 248 67 17 chr5 145924964 145925083 -6612176 + B1F1 SINE Alu 25 149 0 1 1698 545 291 37 25 chr5 145925212 145925374 -6611885 + RSINE1 SINE B4 2 165 0 1 1698 576 0 0 0 chr5 145925666 145925730 -6611529 + (CAGCT)n Simple_repeat Simple_repeat 3 66 0 1 1698 1025 78 156 0 chr5 145926461 145926615 -6610644 + B2_Mm1t SINE B2 2 179 -14 1 1698 326 173 0 75 chr5 145926615 145926734 -6610525 + B2_Mm2 SINE B2 2 109 -107 1 1698 219 69 0 0 chr5 145926748 145926777 -6610482 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1 1698 381 247 22 11 chr5 145926904 145926994 -6610265 + ID_B1 SINE B4 134 224 0 1 1698 595 223 7 14 chr5 145927000 145927141 -6610118 + B1_Mur1 SINE Alu 8 147 -2 1 1698 352 345 76 14 chr5 145927150 145927294 -6609965 + RSINE1 SINE B4 10 162 -3 1 1698 499 208 396 0 chr5 145927484 145927633 -6609626 - ID_B1 SINE B4 -16 208 1 1 1698 216 67 0 0 chr5 145928103 145928133 -6609126 + (CGG)n Simple_repeat Simple_repeat 2 31 0 1 1698 517 109 9 31 chr5 145929009 145929101 -6608158 - B1_Mus2 SINE Alu -2 145 27 1 1698 1175 61 0 39 chr5 145929227 145929381 -6607878 + B1_Mus1 SINE Alu 1 148 0 1 1698 1825 158 139 23 chr5 145929407 145929840 -6607419 + RMER4B LTR ERVK 33 456 -10 1 1698 766 203 0 39 chr5 145929979 145930133 -6607126 + B1_Mus1 SINE Alu 1 148 0 1 1698 181 120 60 0 chr5 145930166 145930216 -6607043 + T-rich Low_complexity Low_complexity 3 55 0 1 1698 1231 61 0 0 chr5 145930229 145930377 -6606882 - B1_Mus1 SINE Alu 0 148 1 1 1698 327 65 0 0 chr5 145930835 145930881 -6606378 + (T)n Simple_repeat Simple_repeat 1 46 0 1 1698 1141 41 7 46 chr5 145930881 145931033 -6606226 - B1_Mm SINE Alu 0 147 2 1 1698 541 184 26 17 chr5 145931142 145931258 -6606001 - B1_Mur1 SINE Alu -5 144 28 1 1698 232 336 42 17 chr5 145931166 145931284 -6605975 - MT2B LTR ERVL -325 276 156 1 1698 1811 221 12 14 chr5 145931466 145931893 -6605366 + BGLII_B LTR ERVK 6 431 -10 1 1698 494 293 7 35 chr5 145932792 145932937 -6604322 - MER3 DNA MER1_type -67 142 2 1 1698 722 228 20 7 chr5 145933377 145933523 -6603736 - B1_Mur2 SINE Alu 0 149 2 1 1698 1208 84 0 143 chr5 145933588 145933637 -6603622 + B2_Mm1t SINE B2 2 34 -159 1 1698 243 0 0 0 chr5 145933637 145933664 -6603595 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1698 1208 84 0 143 chr5 145933664 145933837 -6603422 + B2_Mm1t SINE B2 35 192 -1 1 1698 815 188 97 54 chr5 145933837 145934023 -6603236 + B3 SINE B2 3 196 -20 1 1698 403 283 21 48 chr5 145935083 145935228 -6602031 - B1F1 SINE Alu -8 141 1 1 1698 254 320 48 10 chr5 145936652 145936756 -6600503 - PB1D9 SINE Alu -2 118 11 1 1698 265 308 23 0 chr5 145938536 145938636 -6598623 - MIR SINE MIR -61 147 45 1 1698 220 355 44 11 chr5 145940378 145940469 -6596790 + B4A SINE B4 11 104 -188 1 1698 300 186 0 0 chr5 145940576 145940635 -6596624 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1698 198 0 0 0 chr5 145942073 145942095 -6595164 + (CAG)n Simple_repeat Simple_repeat 1 22 0 1 1698 22 0 0 0 chr5 145942327 145942349 -6594910 + AT_rich Low_complexity Low_complexity 1 22 0 1 1698 641 236 42 42 chr5 145943112 145943189 -6594070 - RLTR20B3 LTR ERVK 0 528 457 1 1698 351 0 0 0 chr5 145943189 145943228 -6594031 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1698 641 254 49 37 chr5 145943228 145943401 -6593858 - RLTR20B3 LTR ERVK -95 482 295 1 1698 670 155 148 17 chr5 145943431 145943610 -6593649 - RLTR20B3 LTR ERVK -302 226 1 1 1698 562 270 108 18 chr5 145943837 145944003 -6593256 + B3 SINE B2 2 182 -34 1 1698 22 0 0 0 chr5 145944004 145944026 -6593233 + AT_rich Low_complexity Low_complexity 1 22 0 1 1698 690 236 76 0 chr5 145944027 145944184 -6593075 + B3 SINE B2 26 194 -22 1 1698 779 223 7 7 chr5 145944189 145944338 -6592921 + B1_Mur2 SINE Alu 1 149 0 1 1698 2556 122 14 124 chr5 145945852 145945983 -6591276 + RLTR11B LTR ERVK 3 134 -319 1 1698 1179 48 14 0 chr5 145945983 145946128 -6591131 + B1_Mus1 SINE Alu 2 148 0 1 1698 2556 122 14 124 chr5 145946128 145946503 -6590756 + RLTR11B LTR ERVK 135 453 0 1 1698 408 209 81 0 chr5 145946639 145946725 -6590534 + ID_B1 SINE B4 124 216 -8 1 1698 445 239 83 0 chr5 145946731 145946840 -6590419 + B1_Mur1 SINE Alu 32 149 0 1 1698 462 321 28 7 chr5 145947250 145947391 -6589868 - ID_B1 SINE B4 -1 223 80 1 1698 305 159 221 74 chr5 145947435 145947530 -6589729 + PB1D10 SINE Alu 1 109 -8 1 1698 524 268 296 0 chr5 145947636 145947849 -6589410 - B4A SINE B4 -15 277 2 1 1698 466 179 388 7 chr5 145948308 145948460 -6588799 + B3 SINE B2 1 210 -6 1 1698 268 343 57 0 chr5 145948576 145948681 -6588578 + PB1D10 SINE Alu 1 111 -6 1 1698 1100 102 0 0 chr5 145948691 145948838 -6588421 + B1_Mus2 SINE Alu 1 147 0 1 1698 324 70 0 0 chr5 145948838 145948881 -6588378 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1 1698 21 0 0 0 chr5 145948881 145948902 -6588357 + AT_rich Low_complexity Low_complexity 1 21 0 1 1698 432 127 0 0 chr5 145948914 145948977 -6588282 - B3A SINE B2 -134 64 2 1 1698 895 169 7 20 chr5 145949215 145949366 -6587893 + B1_Mur2 SINE Alu 1 149 0 1 1698 995 169 202 0 chr5 145949393 145949571 -6587688 + B3 SINE B2 1 214 -2 1 1698 886 207 109 0 chr5 145949590 145949783 -6587476 - B3 SINE B2 -2 214 1 1 1698 716 189 39 0 chr5 145950004 145950131 -6587128 - B1_Mm SINE Alu -1 146 15 1 1698 330 234 59 78 chr5 145950062 145950164 -6587095 - MT2B2 LTR ERVL -344 240 141 1 1698 250 238 0 125 chr5 145950135 145950207 -6587052 + RSINE1 SINE B4 103 165 0 1 1698 828 214 128 20 chr5 145950284 145950480 -6586779 - ID_B1 SINE B4 0 224 8 1 1698 488 256 0 41 chr5 145950548 145950670 -6586589 - PB1D10 SINE Alu 0 117 1 1 1698 817 228 0 13 chr5 145950753 145950904 -6586355 + B1_Mur2 SINE Alu 1 149 0 1 1698 398 218 11 11 chr5 145950928 145951016 -6586243 + B1_Mus1 SINE Alu 6 93 -55 1 1698 478 227 210 0 chr5 145951208 145951327 -6585932 + B1_Mus1 SINE Alu 3 146 -2 1 1698 411 275 0 92 chr5 145951424 145951544 -6585715 + PB1D10 SINE Alu 1 109 -8 1 1698 257 282 53 72 chr5 145951798 145951916 -6585343 + MIR SINE MIR 34 150 -58 1 1698 213 309 173 0 chr5 145952604 145952685 -6584574 + BC1_Mm scRNA scRNA 2 96 -56 1 1698 1116 206 10 10 chr5 145953162 145953368 -6583891 - B3 SINE B2 -10 206 1 1 1698 1446 80 5 0 chr5 145953383 145953570 -6583689 - B2_Mm1t SINE B2 -5 188 1 1 1698 279 268 0 0 chr5 145954233 145954289 -6582970 - B1F1 SINE Alu -93 56 1 1 1698 621 169 68 0 chr5 145954411 145954529 -6582730 + B1_Mur3 SINE Alu 11 136 -13 1 1698 411 266 54 18 chr5 145954684 145954795 -6582464 + PB1D7 SINE Alu 1 115 -5 1 1698 297 267 0 28 chr5 145954809 145954894 -6582365 - ID4 SINE ID -59 93 12 1 1698 554 313 26 7 chr5 145955074 145955225 -6582034 - RSINE1 SINE B4 -1 164 11 1 1698 536 224 26 8 chr5 145955548 145955665 -6581594 + RSINE1 SINE B4 3 121 -44 1 1698 213 240 0 39 chr5 145955648 145955700 -6581559 + B1F SINE Alu 100 149 0 1 1698 255 308 25 123 chr5 145955811 145955832 -6581427 + B4A SINE B4 71 75 -217 1 1698 683 192 13 82 chr5 145955832 145955991 -6581268 + B1_Mur2 SINE Alu 2 149 0 1 1698 290 297 32 32 chr5 145956090 145956307 -6580952 - MMSAT4 Satellite Satellite -5 217 1 1 1698 578 304 115 44 chr5 145957549 145957845 -6579414 + Lx8 LINE L1 7154 7470 -3 1 1698 1285 41 0 0 chr5 145957856 145958003 -6579256 + B1_Mus2 SINE Alu 1 147 0 1 1698 1300 20 0 0 chr5 145958048 145958195 -6579064 - B1_Mm SINE Alu 0 147 1 1 1698 707 167 58 7 chr5 145958213 145958352 -6578907 + B1F1 SINE Alu 2 147 -2 1 1698 415 292 146 18 chr5 145958517 145958688 -6578571 + MTD LTR MaLR 18 210 -209 1 1698 577 275 24 30 chr5 145958689 145958854 -6578405 + RSINE1 SINE B4 2 165 0 1 1698 668 74 0 10 chr5 145958876 145958972 -6578287 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1 1698 262 261 54 158 chr5 145959075 145959304 -6577955 - ORR1E LTR MaLR 0 379 155 1 1698 350 239 185 113 chr5 145959251 145959498 -6577761 + MTD LTR MaLR 183 419 0 1 1698 599 292 260 3 chr5 145959833 145960118 -6577141 + MTEa LTR MaLR 12 369 -10 1 1698 1623 157 64 7 chr5 145960144 145960440 -6576819 - RLTR15 LTR ERVK -44 315 3 1 1698 215 31 31 0 chr5 145960474 145960506 -6576753 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1 1698 244 102 0 125 chr5 145960506 145960555 -6576704 - B1_Mur4 SINE Alu -9 141 98 1 1698 290 204 0 0 chr5 145960522 145960571 -6576688 - PB1D9 SINE Alu -61 59 11 1 1698 810 262 23 60 chr5 145960688 145960903 -6576356 + ID_B1 SINE B4 8 214 -10 1 1698 526 279 34 73 chr5 145961366 145961571 -6575688 + B3A SINE B2 2 198 0 1 1698 558 270 7 26 chr5 145961647 145961799 -6575460 + B1_Mur1 SINE Alu 1 149 0 1 1698 633 238 14 20 chr5 145961978 145962124 -6575135 - B3A SINE B2 -53 145 1 1 1698 801 0 0 0 chr5 145962898 145962987 -6574272 + (TGGA)n Simple_repeat Simple_repeat 1 89 0 1 1698 37 0 0 0 chr5 145963029 145963066 -6574193 + AT_rich Low_complexity Low_complexity 1 37 0 1 1698 431 232 0 69 chr5 145963069 145963171 -6574088 + B3 SINE B2 2 96 -120 1 1698 785 194 14 0 chr5 145963254 145963393 -6573866 - B1_Mur3 SINE Alu 0 149 9 1 1698 543 231 68 31 chr5 145963440 145963601 -6573658 + B3 SINE B2 46 212 -4 1 1698 711 161 17 0 chr5 145963600 145963718 -6573541 + B1_Mus2 SINE Alu 27 146 -1 1 1698 617 167 29 1 chr5 145963733 145963851 -6573408 + B1_Mur1 SINE Alu 7 126 -24 1 1698 358 164 0 16 chr5 145963835 145963897 -6573362 - B3 SINE B2 -74 142 82 1 1698 198 191 0 0 chr5 145964341 145964383 -6572876 + CT-rich Low_complexity Low_complexity 3 44 0 1 1698 714 24 0 0 chr5 145964416 145964500 -6572759 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 1 1698 1138 45 0 0 chr5 145964500 145964634 -6572625 - B1_Mus1 SINE Alu -14 134 1 1 1698 290 217 29 14 chr5 145964822 145964892 -6572367 - RSINE1 SINE B4 -93 72 2 1 1698 679 189 13 101 chr5 145966669 145966828 -6570431 - B1_Mur2 SINE Alu -3 146 2 1 1698 1388 86 27 5 chr5 145966912 145967100 -6570159 - B2_Mm2 SINE B2 -3 192 1 1 1698 1197 51 0 0 chr5 145967341 145967478 -6569781 + B1_Mm SINE Alu 1 137 -10 1 1698 913 190 104 21 chr5 145967500 145967693 -6569566 - B3 SINE B2 -6 210 2 1 1698 198 0 0 0 chr5 145967693 145967715 -6569544 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 1 1698 871 231 44 0 chr5 145967718 145967878 -6569381 - B3A SINE B2 -28 170 4 1 1698 1153 193 0 19 chr5 145967905 145968116 -6569143 - B3 SINE B2 -6 210 4 1 1698 819 198 107 0 chr5 145968733 145968930 -6568329 + ID_B1 SINE B4 5 222 -2 1 1698 2331 150 57 91 chr5 145969063 145969105 -6568154 + RLTR31_Mm LTR ERVK 1 42 -519 1 1698 2812 31 0 3 chr5 145969105 145969428 -6567831 - RLTRETN_Mm LTR ERVK 0 322 1 1 1698 2331 150 57 91 chr5 145969428 145969966 -6567293 + RLTR31_Mm LTR ERVK 43 561 0 1 1698 705 249 112 0 chr5 145970006 145970175 -6567084 - B3A SINE B2 -10 188 1 1 1698 258 122 26 26 chr5 145970181 145970257 -6567002 + (TTTG)n Simple_repeat Simple_repeat 3 78 0 1 1698 814 68 186 0 chr5 145970263 145970381 -6566878 - B1_Mm SINE Alu -6 141 2 1 1698 1149 133 40 0 chr5 145970399 145970572 -6566687 - B2_Mm2 SINE B2 -14 181 2 1 1698 394 269 7 65 chr5 145970572 145970704 -6566555 - Looper DNA PiggyBac -636 922 799 1 1698 274 219 125 0 chr5 145970689 145970753 -6566506 - MTD-int LTR MaLR -1186 72 1 1 1698 783 197 14 7 chr5 145970815 145970963 -6566296 - B1_Mur4 SINE Alu 0 150 2 1 1698 1823 215 89 3 chr5 145970972 145971354 -6565905 - MTD LTR MaLR 0 419 5 1 1698 854 207 72 36 chr5 145971502 145971697 -6565562 + B3 SINE B2 15 216 0 1 1698 234 0 0 0 chr5 145971770 145971796 -6565463 + (TC)n Simple_repeat Simple_repeat 2 27 0 1 1698 734 197 0 66 chr5 145971797 145971949 -6565310 - B1_Mur2 SINE Alu -7 142 1 1 1698 423 229 0 0 chr5 145972050 145972133 -6565126 + PB1 SINE Alu 2 84 -43 1 1698 610 174 20 0 chr5 145972350 145972448 -6564811 - PB1D9 SINE Alu -20 100 1 1 1698 1024 251 48 117 chr5 145972760 145973169 -6564090 - MTE2b LTR MaLR 0 419 26 1 1698 1357 73 45 0 chr5 145973597 145973776 -6563483 - B2_Mm2 SINE B2 -8 187 1 1 1698 983 177 120 0 chr5 145973832 145974024 -6563235 - B3 SINE B2 0 216 2 1 1698 346 316 58 99 chr5 145974147 145974203 -6563056 - RSINE1 SINE B4 0 165 108 1 1698 840 192 7 7 chr5 145974203 145974350 -6562909 - B1_Mur1 SINE Alu -1 148 2 1 1698 346 316 58 99 chr5 145974350 145974465 -6562794 - RSINE1 SINE B4 -58 107 1 1 1698 763 242 124 0 chr5 145974484 145974670 -6562589 - B3 SINE B2 -5 211 3 1 1698 452 202 33 11 chr5 145974673 145974763 -6562496 - PB1D10 SINE Alu 0 117 26 1 1698 490 294 28 7 chr5 145974838 145974982 -6562277 - B1_Mur1 SINE Alu 0 149 3 1 1698 741 211 99 81 chr5 145975010 145975221 -6562038 - B3 SINE B2 0 216 2 1 1698 1192 252 153 6 chr5 145975265 145975585 -6561674 - MTEa LTR MaLR 0 379 13 1 1698 204 40 0 0 chr5 145975665 145975690 -6561569 + (TCC)n Simple_repeat Simple_repeat 3 27 0 1 1698 858 134 52 26 chr5 145975693 145975846 -6561413 - B2_Mm2 SINE B2 -37 158 2 1 1698 1165 42 0 27 chr5 145976098 145976245 -6561014 + B1_Mus2 SINE Alu 3 145 -2 1 1698 276 77 0 0 chr5 145976255 145976294 -6560965 + (A)n Simple_repeat Simple_repeat 1 39 0 1 1698 787 219 13 0 chr5 145976657 145976808 -6560451 - RSINE1 SINE B4 -11 154 2 1 1698 958 129 13 13 chr5 145976934 145977091 -6560168 + B2_Mm2 SINE B2 24 180 -15 1 1698 1370 99 5 0 chr5 145977091 145977282 -6559977 + B2_Mm1t SINE B2 1 192 -1 1 1698 1232 61 0 0 chr5 145977283 145977430 -6559829 + B1_Mus2 SINE Alu 1 147 0 1 1698 218 106 21 0 chr5 145977430 145977477 -6559782 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 1 1698 463 301 101 11 chr5 145977489 145977667 -6559592 + B3A SINE B2 2 195 -3 1 1698 246 235 0 19 chr5 145978001 145978053 -6559206 - B1F1 SINE Alu -90 59 9 1 1698 1394 62 22 0 chr5 145978134 145978312 -6558947 + B2_Mm2 SINE B2 2 183 -12 1 1698 243 0 0 0 chr5 145978312 145978339 -6558920 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1 1698 1076 122 0 13 chr5 145978339 145978497 -6558762 + B2_Mm2 SINE B2 30 185 -10 1 1698 234 0 0 0 chr5 145978560 145978586 -6558673 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1 1698 395 308 10 0 chr5 145978643 145978747 -6558512 + ID_B1 SINE B4 12 116 -108 1 1698 836 196 133 5 chr5 145978786 145978981 -6558278 - ID_B1 SINE B4 -2 222 3 1 1698 410 269 58 36 chr5 145979833 145979972 -6557287 + B1F2 SINE Alu 2 143 -6 1 1698 24 67 0 0 chr5 145980053 145980098 -6557161 + AT_rich Low_complexity Low_complexity 1 45 0 1 1698 343 287 31 108 chr5 145980098 145980157 -6557102 - ID_B1 SINE B4 0 224 176 1 1698 294 29 0 0 chr5 145980157 145980192 -6557067 + (TC)n Simple_repeat Simple_repeat 2 36 0 1 1698 911 85 108 0 chr5 145980192 145980321 -6556938 - B1_Mus1 SINE Alu -3 145 3 1 1698 343 287 31 108 chr5 145980321 145980389 -6556870 - ID_B1 SINE B4 -49 175 107 1 1698 352 290 11 0 chr5 145980385 145980478 -6556781 - PB1D10 SINE Alu -23 94 1 1 1698 395 180 64 53 chr5 145980498 145980592 -6556667 - B1F SINE Alu -32 117 23 1 1698 201 39 0 0 chr5 145980763 145980789 -6556470 + (GTTTG)n Simple_repeat Simple_repeat 3 28 0 1 1698 180 0 0 0 chr5 145980789 145980809 -6556450 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1 1698 440 171 238 0 chr5 145982221 145982326 -6554933 + B1_Mur1 SINE Alu 2 131 -18 1 1698 189 0 0 0 chr5 145982335 145982356 -6554903 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 1 1698 419 264 57 8 chr5 145982788 145982910 -6554349 + RSINE1 SINE B4 34 161 -4 1 1698 332 210 151 11 chr5 145982903 145983023 -6554236 + B1_Mur2 SINE Alu 17 148 -1 1 1698 945 101 28 21 chr5 145983037 145983179 -6554080 + B1_Mur4 SINE Alu 7 149 -1 1 1698 393 22 0 0 chr5 145983254 145983300 -6553959 + (TC)n Simple_repeat Simple_repeat 1 46 0 1 1698 1244 35 0 0 chr5 145983301 145983442 -6553817 - B1_Mm SINE Alu -6 141 1 1 1698 275 302 18 70 chr5 145983607 145983721 -6553538 - PB1 SINE Alu -14 113 6 1 1698 749 238 122 0 chr5 145983627 145983799 -6553460 - ID_B1 SINE B4 -31 193 1 1 1698 460 271 119 82 chr5 145984072 145984341 -6552918 - B4A SINE B4 -9 283 5 1 1698 1348 56 78 0 chr5 145984922 145985101 -6552158 - B2_Mm2 SINE B2 0 195 3 1 1698 835 237 19 72 chr5 145985123 145985332 -6551927 - B3A SINE B2 0 198 1 1 1698 378 0 0 0 chr5 145985480 145985522 -6551737 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1698 959 218 126 80 chr5 145985529 145985918 -6551341 - RMER6A LTR ERVK 0 756 350 1 1698 621 57 11 43 chr5 145985869 145985961 -6551298 - B1_Mm SINE Alu 0 147 59 1 1698 511 116 11 95 chr5 145985936 145985968 -6551291 - RMER6B LTR ERVK -374 87 57 1 1698 1388 90 21 0 chr5 145985968 145986157 -6551102 + B2_Mm2 SINE B2 2 194 -1 1 1698 511 116 11 95 chr5 145986157 145986219 -6551040 - RMER6B LTR ERVK -405 56 1 1 1698 198 103 0 0 chr5 145986287 145986316 -6550943 + (TGG)n Simple_repeat Simple_repeat 2 30 0 1 1698 1047 53 0 0 chr5 145986316 145986448 -6550811 + B1_Mus1 SINE Alu 17 148 0 1 1698 811 244 11 11 chr5 145986883 145987057 -6550202 + B3A SINE B2 3 176 -22 1 1698 432 143 187 0 chr5 145987075 145987166 -6550093 - PB1D9 SINE Alu -12 108 1 1 1698 429 20 0 0 chr5 145987180 145987230 -6550029 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 1 1698 258 234 59 59 chr5 145987249 145987298 -6549961 - B2_Mm2 SINE B2 -66 129 81 1 1698 3421 95 4 35 chr5 145987298 145987641 -6549618 - RLTR19C LTR ERVK 0 506 177 1 1698 4240 87 5 19 chr5 145987641 145988216 -6549043 + RMER2 LTR ERV1 1 567 0 1 1698 3421 95 4 35 chr5 145988216 145988394 -6548865 - RLTR19C LTR ERVK -330 176 1 1 1698 601 158 0 21 chr5 145988394 145988488 -6548771 - B2_Mm2 SINE B2 -102 93 2 1 1698 875 168 15 0 chr5 145988530 145988667 -6548592 + B1_Mus1 SINE Alu 1 139 -9 1 1698 270 0 0 0 chr5 145988673 145988703 -6548556 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1 1698 328 184 111 33 chr5 145988706 145988796 -6548463 - RSINE1 SINE B4 -62 103 7 1 1698 529 254 43 36 chr5 145988819 145988958 -6548301 - B1F SINE Alu -9 140 1 1 1698 425 260 115 23 chr5 145989236 145989366 -6547893 + B1F2 SINE Alu 3 144 -5 1 1698 493 223 48 165 chr5 145989470 145989658 -6547601 + B4 SINE B4 4 169 -123 1 1698 542 143 52 87 chr5 145989576 145989679 -6547580 + PB1D9 SINE Alu 7 107 -13 1 1698 266 0 0 29 chr5 145989679 145989714 -6547545 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1 1698 542 143 52 87 chr5 145989714 145989725 -6547534 + PB1D9 SINE Alu 108 117 -3 1 1698 496 277 163 6 chr5 145989720 145989898 -6547361 + B4A SINE B4 82 287 -5 1 1698 351 0 0 0 chr5 145989899 145989938 -6547321 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1698 1260 83 16 22 chr5 145989957 145990141 -6547118 - B2_Mm1a SINE B2 -9 184 2 1 1698 252 0 0 0 chr5 145990154 145990182 -6547077 + (TATG)n Simple_repeat Simple_repeat 2 29 0 1 1698 1215 54 0 7 chr5 145990182 145990331 -6546928 - B1_Mus1 SINE Alu 0 148 1 1 1698 2338 148 28 20 chr5 145990331 145990730 -6546529 - RMER4A LTR ERVK -24 442 41 1 1698 214 233 0 0 chr5 145990730 145990773 -6546486 + C-rich Low_complexity Low_complexity 1 43 0 1 1698 281 95 0 0 chr5 145990773 145990815 -6546444 - RMER4A LTR ERVK -424 42 1 1 1698 575 180 30 0 chr5 145990815 145990915 -6546344 - B1_Mus1 SINE Alu -42 106 4 1 1698 182 171 24 0 chr5 145990973 145991014 -6546245 + T-rich Low_complexity Low_complexity 2 43 0 1 1698 1310 114 16 0 chr5 145991032 145991216 -6546043 + B2_Mm2 SINE B2 1 187 -8 1 1698 460 163 117 30 chr5 145991216 145991337 -6545922 - B1_Mur1 SINE Alu -5 144 4 1 1698 733 229 40 55 chr5 145991365 145991564 -6545695 - B3A SINE B2 0 198 3 1 1698 543 246 79 35 chr5 145991571 145991773 -6545486 - B3 SINE B2 -4 212 2 1 1698 234 0 0 0 chr5 145993398 145993424 -6543835 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1 1698 340 259 129 0 chr5 145993428 145993452 -6543807 - PB1D10 SINE Alu -1 116 21 1 1698 370 164 0 0 chr5 145993452 145993513 -6543746 - ID_B1 SINE B4 -62 162 102 1 1698 261 0 0 0 chr5 145993521 145993550 -6543709 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1698 275 268 10 146 chr5 145993661 145993757 -6543502 - ID4_ SINE ID 0 83 1 1 1698 595 229 84 0 chr5 145993898 145994029 -6543230 - B1_Mur4 SINE Alu -8 142 1 1 1698 21 0 0 0 chr5 145994031 145994052 -6543207 + AT_rich Low_complexity Low_complexity 1 21 0 1 1698 601 163 110 52 chr5 145994062 145994198 -6543061 + B1_Mur3 SINE Alu 1 144 -5 1 1698 243 303 130 69 chr5 145995000 145995131 -6542128 - B1F1 SINE Alu -10 139 1 1 1698 749 184 32 0 chr5 145995453 145995578 -6541681 - B1_Mur3 SINE Alu -18 131 3 1 1698 849 220 68 5 chr5 145995596 145995788 -6541471 - ID_B1 SINE B4 -16 208 5 1 1698 227 176 0 121 chr5 145995800 145995858 -6541401 - B1F SINE Alu 0 149 99 1 1698 180 0 0 0 chr5 145995861 145995881 -6541378 + (TCTG)n Simple_repeat Simple_repeat 4 23 0 1 1698 362 281 36 36 chr5 145996597 145996737 -6540522 + MurSatRep1 Unknown Unknown 605 744 -1393 1 1698 259 125 13 53 chr5 145997030 145997106 -6540153 + CT-rich Low_complexity Low_complexity 1 73 0 1 1698 1074 71 0 0 chr5 145997389 145997529 -6539730 - B2_Mm2 SINE B2 -54 141 2 1 1698 288 70 0 0 chr5 145997754 145997797 -6539462 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1698 660 179 39 39 chr5 145999358 145999486 -6537773 + B1_Mur4 SINE Alu 22 149 -1 1 1698 432 273 148 0 chr5 145999536 145999664 -6537595 - RSINE1 SINE B4 -15 150 4 1 1698 238 322 41 65 chr5 145999722 145999845 -6537414 - B1_Mur2 SINE Alu -15 134 15 1 1698 582 233 17 0 chr5 145999848 145999964 -6537295 + PB1D9 SINE Alu 2 119 -1 1 1698 864 158 13 33 chr5 146000017 146000168 -6537091 - B1_Mur4 SINE Alu -1 149 2 1 1698 884 231 60 0 chr5 146000444 146000643 -6536616 - B3 SINE B2 -5 211 1 2 1698 646 135 52 35 chr5 146000850 146000965 -6536294 - B3 SINE B2 -86 130 14 3 1698 1265 228 237 30 chr5 146001014 146001557 -6535702 - Lx8 LINE L1 -363 7110 6454 4 1698 345 179 14 56 chr5 146001567 146001638 -6535621 - B1_Mus2 SINE Alu 0 147 80 5 1698 258 105 0 0 chr5 146001665 146001703 -6535556 + (CCTA)n Simple_repeat Simple_repeat 1 38 0 6 1698 1367 62 80 0 chr5 146001703 146001879 -6535380 - B2_Mm2 SINE B2 -4 191 2 7 1698 341 227 31 61 chr5 146002146 146002245 -6535014 + B1F SINE Alu 43 141 -8 8 1698 477 99 0 0 chr5 146002249 146002330 -6534929 + (CA)n Simple_repeat Simple_repeat 2 82 0 9 1698 725 227 69 6 chr5 146002818 146002991 -6534268 - B3A SINE B2 -13 185 2 1 1698 1202 55 0 0 chr5 146003034 146003179 -6534080 + B1_Mus2 SINE Alu 3 147 0 1 1698 24 53 0 0 chr5 146003200 146003238 -6534021 + AT_rich Low_complexity Low_complexity 1 38 0 1 1698 24 0 0 0 chr5 146004372 146004396 -6532863 + AT_rich Low_complexity Low_complexity 1 24 0 1 1698 445 225 24 24 chr5 146004982 146005105 -6532154 + MMSAT4 Satellite Satellite 31 153 -15 1 1698 328 293 36 36 chr5 146005402 146005540 -6531719 + MMSAT4 Satellite Satellite 31 168 0 1 1698 229 222 0 0 chr5 146005738 146005783 -6531476 + MMSAT4 Satellite Satellite 31 75 -93 1 1698 471 232 98 0 chr5 146007445 146007557 -6529702 - PB1 SINE Alu -2 125 3 1 1698 823 208 96 10 chr5 146008366 146008565 -6528694 - B3 SINE B2 0 216 1 1 1698 220 200 43 22 chr5 146009042 146009088 -6528171 - B1_Mus1 SINE Alu -99 49 2 1 1698 27 0 0 26 chr5 146009108 146009129 -6528130 + AT_rich Low_complexity Low_complexity 1 21 0 2 1698 1292 27 0 0 chr5 146009129 146009277 -6527982 - B1_Mus1 SINE Alu 0 148 1 2 1698 27 0 0 26 chr5 146009277 146009293 -6527966 + AT_rich Low_complexity Low_complexity 1 16 0 2 1698 1078 197 105 77 chr5 146009592 146009905 -6527354 - ORR1D1 LTR MaLR -48 326 5 2 1698 275 253 148 11 chr5 146009922 146010010 -6527249 - PB1D9 SINE Alu -1 119 20 2 1698 260 92 17 85 chr5 146010012 146010071 -6527188 - B3 SINE B2 -9 207 153 2 1698 297 85 0 0 chr5 146010080 146010089 -6527170 + (T)n Simple_repeat Simple_repeat 1 9 0 2 1698 1107 42 13 46 chr5 146010089 146010240 -6527019 - B1_Mm SINE Alu 0 147 2 2 1698 297 85 0 0 chr5 146010240 146010277 -6526982 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1698 371 240 192 0 chr5 146010383 146010508 -6526751 - Lx8 LINE L1 -690 6783 6635 2 1698 233 233 133 0 chr5 146010599 146010659 -6526600 - ID SINE ID -156 68 1 3 1698 581 259 38 6 chr5 146010999 146011158 -6526101 + RSINE1 SINE B4 2 165 0 3 1698 1210 55 7 0 chr5 146011318 146011464 -6525795 + B1_Mm SINE Alu 1 147 0 3 1698 975 162 151 5 chr5 146011557 146011749 -6525510 + URR1A DNA MER1_type 7 226 0 3 1698 526 254 38 23 chr5 146013015 146013148 -6524111 - B1F SINE Alu -2 147 13 3 1698 963 127 21 65 chr5 146013364 146013550 -6523709 - B2_Mm2 SINE B2 -14 181 4 3 1698 504 339 33 5 chr5 146013608 146013792 -6523467 - MLT2B1 LTR ERVL -331 189 1 3 1698 383 253 48 0 chr5 146013881 146013964 -6523295 - B1_Mm SINE Alu -56 91 5 3 1698 245 308 49 37 chr5 146013895 146013976 -6523283 - ID_B1 SINE B4 -67 157 76 3 212 1051 64 177 6 chr5 146014069 146014227 -6523032 - B2_Mm2 SINE B2 -9 186 2 3 1699 699 151 9 26 chr5 146014361 146014477 -6522782 + ID_B1 SINE B4 109 222 -2 4 1699 3443 73 2 26 chr5 146014492 146014959 -6522300 - LTRIS_Mus LTR ERV1 0 587 132 4 1699 2768 35 0 12 chr5 146014963 146015269 -6521990 - ORR1A1 LTR MaLR -8 338 1 4 1699 1188 87 35 11 chr5 146015269 146015305 -6521954 - LTRIS_Mus LTR ERV1 -409 178 137 4 1699 13624 57 18 7 chr5 146015305 146017077 -6520182 - ORR1A1-int LTR MaLR 0 1792 1 4 1699 2587 51 31 51 chr5 146017077 146017426 -6519833 - ORR1A1 LTR MaLR -2 344 1 4 1699 1188 87 35 11 chr5 146017426 146017562 -6519697 - LTRIS_Mus LTR ERV1 -451 136 2 4 1699 6593 115 8 18 chr5 146017562 146018515 -6518744 - MuRRS4-int LTR ERV1 0 4690 3747 4 1699 8792 268 46 39 chr5 146018559 146019319 -6517940 - MuRRS4-int LTR ERV1 -2271 2792 2013 4 1699 1237 41 7 0 chr5 146019319 146019465 -6517794 + B1_Mus2 SINE Alu 1 147 0 4 1699 8792 268 46 39 chr5 146019465 146021102 -6516157 - MuRRS4-int LTR ERV1 -3051 2012 346 4 1699 437 115 11 0 chr5 146021102 146021189 -6516070 + (CA)n Simple_repeat Simple_repeat 2 89 0 4 1699 8792 268 46 39 chr5 146021189 146021537 -6515722 - MuRRS4-int LTR ERV1 -4718 345 26 4 1699 3446 75 9 29 chr5 146021542 146022029 -6515230 - LTRIS_Mus LTR ERV1 -51 603 132 4 1699 2526 39 0 7 chr5 146022029 146022338 -6514921 - ORR1A1 LTR MaLR 0 346 40 4 1699 7062 50 5 2 chr5 146022338 146023206 -6514053 + L1Md_F2 LINE L1 5712 6581 -1 4 1699 22 56 0 0 chr5 146023213 146023249 -6514010 + AT_rich Low_complexity Low_complexity 1 36 0 4 1699 487 236 157 59 chr5 146023307 146023460 -6513799 + B3A SINE B2 1 168 -30 5 1699 389 281 17 9 chr5 146023534 146023649 -6513610 - PB1D10 SINE Alu 0 117 2 5 1699 315 262 125 45 chr5 146023727 146023815 -6513444 + PB1D9 SINE Alu 20 114 -6 5 1699 296 285 115 83 chr5 146023981 146024138 -6513121 + MLT1K LTR MaLR 190 351 -244 5 1699 225 0 0 0 chr5 146024375 146024400 -6512859 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 5 1699 1021 76 13 33 chr5 146024400 146024550 -6512709 - B1_Mus1 SINE Alu 0 148 2 5 1699 398 303 56 31 chr5 146024588 146024748 -6512511 - B3A SINE B2 0 198 35 5 1699 753 255 76 9 chr5 146024776 146024986 -6512273 - ID_B1 SINE B4 0 224 1 5 1699 551 154 236 0 chr5 146025021 146025131 -6512128 + B1_Mur3 SINE Alu 5 140 -9 5 1699 186 43 0 0 chr5 146025135 146025158 -6512101 + (CAA)n Simple_repeat Simple_repeat 2 24 0 5 1699 1073 91 7 0 chr5 146025170 146025306 -6511953 + B1_Mus1 SINE Alu 3 139 -9 6 1699 378 0 0 0 chr5 146025306 146025348 -6511911 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 6 1699 1433 222 77 68 chr5 146025387 146025825 -6511434 + ORR1C2 LTR MaLR 1 392 -2 6 1699 1049 110 14 0 chr5 146026032 146026177 -6511082 + B1_Mus1 SINE Alu 1 147 -1 6 1699 587 293 18 48 chr5 146026290 146026455 -6510804 + RSINE1 SINE B4 6 165 0 6 1699 320 184 10 0 chr5 146026455 146026553 -6510706 + (CA)n Simple_repeat Simple_repeat 1 99 0 6 1699 1619 180 128 6 chr5 146027246 146027581 -6509678 - RLTR1 LTR ERV1 0 624 249 6 1699 231 385 0 9 chr5 146027828 146027938 -6509321 + PB1D10 SINE Alu 2 110 -7 6 1699 282 56 0 0 chr5 146028020 146028056 -6509203 + (GGGAGA)n Simple_repeat Simple_repeat 1 36 0 6 1699 1664 26 11 0 chr5 146028243 146028434 -6508825 - B2_Mm1a SINE B2 0 193 1 6 1699 930 155 0 7 chr5 146028634 146028777 -6508482 - B1_Mur4 SINE Alu -6 144 3 7 1699 1926 142 3 52 chr5 146029406 146029732 -6507527 - MT2C_Mm LTR ERVL 0 475 166 7 1699 363 221 13 25 chr5 146029661 146029740 -6507519 - RLTR25A LTR ERVK -513 590 513 7 1699 1038 230 76 158 chr5 146029766 146029921 -6507338 + ORR1A2-int LTR MaLR 867 1143 -817 7 1699 1064 52 0 22 chr5 146029921 146030058 -6507201 + B1_Mus1 SINE Alu 15 148 0 7 1699 294 95 0 0 chr5 146030061 146030103 -6507156 + (CAAG)n Simple_repeat Simple_repeat 2 43 0 7 1699 5972 113 35 13 chr5 146030103 146031030 -6506229 + ORR1A2-int LTR MaLR 1029 1963 0 7 1699 1881 136 61 10 chr5 146031030 146031341 -6505918 + ORR1A2 LTR MaLR 1 327 0 7 1699 2434 118 3 8 chr5 146031341 146031699 -6505560 - MERVL_2A-int LTR ERVL -275 5210 4855 7 1699 231 330 82 64 chr5 146031700 146031810 -6505449 - MLT2B5 LTR ERVL -301 300 189 7 1699 972 185 0 0 chr5 146031810 146031961 -6505298 - MERVL_2A-int LTR ERVL -916 4845 4695 7 1699 1064 117 0 0 chr5 146031961 146032115 -6505144 + B2_Mm2 SINE B2 1 154 -41 7 1699 180 0 0 0 chr5 146032116 146032136 -6505123 + (TAAAA)n Simple_repeat Simple_repeat 5 24 0 7 1699 21891 125 16 8 chr5 146032144 146032758 -6504501 - MERVL_2A-int LTR ERVL -1053 4708 4109 7 1699 2003 49 271 3 chr5 146032758 146033046 -6504213 - RLTR10B2 LTR ERVK 0 365 1 8 1699 21891 125 16 8 chr5 146033046 146035592 -6501667 - MERVL_2A-int LTR ERVL -1653 4108 1523 7 1699 3011 114 0 51 chr5 146035588 146036066 -6501193 - MERVL_2A-int LTR ERVL -4549 936 507 7 1699 465 337 62 16 chr5 146036087 146036341 -6500918 - RLTR26 LTR ERVK -342 300 14 8 1699 197 225 0 48 chr5 146036611 146036653 -6500606 - MIR SINE MIR -60 148 109 8 1699 963 205 80 56 chr5 146037207 146037662 -6499597 + RLTR20C LTR ERVK 1 578 0 8 1699 510 184 248 0 chr5 146037681 146037790 -6499469 - B1_Mur4 SINE Alu -14 136 1 8 1699 380 342 79 0 chr5 146037844 146037996 -6499263 - RSINE1 SINE B4 0 165 2 8 1699 448 178 95 38 chr5 146038387 146038492 -6498767 - ID_B1 SINE B4 -1 223 113 8 1699 460 167 3 0 chr5 146038523 146038612 -6498647 - B1_Mur2 SINE Alu -2 118 29 8 1699 830 67 0 0 chr5 146038610 146038714 -6498545 - B1_Mus2 SINE Alu -12 135 32 8 1699 1511 49 38 0 chr5 146038718 146038903 -6498356 - B2_Mm2 SINE B2 -3 192 1 8 1699 1214 112 5 26 chr5 146038905 146039097 -6498162 - B2_Mm2 SINE B2 -7 188 1 9 1699 286 37 11 109 chr5 146039371 146039463 -6497796 + (TAA)n Simple_repeat Simple_repeat 2 84 0 9 1699 809 132 15 44 chr5 146039612 146039747 -6497512 + B1_Mus2 SINE Alu 5 135 -12 9 1699 315 0 0 0 chr5 146039748 146039783 -6497476 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1699 647 230 32 0 chr5 146039833 146039959 -6497300 - B1_Mur2 SINE Alu -18 131 2 9 1699 737 204 27 27 chr5 146040174 146040313 -6496946 + B1_Mur2 SINE Alu 1 140 -9 9 1699 256 83 20 20 chr5 146040313 146040362 -6496897 + (CAAG)n Simple_repeat Simple_repeat 2 50 0 9 1699 981 195 80 149 chr5 146040363 146040642 -6496617 - MTE2a LTR MaLR -45 334 81 9 1699 1163 44 0 0 chr5 146040642 146040779 -6496480 + B1_Mus2 SINE Alu 1 137 -10 9 1699 981 195 80 149 chr5 146040779 146040848 -6496411 - MTE2a LTR MaLR -299 80 10 9 1699 256 167 0 0 chr5 146040853 146040901 -6496358 + Lx8 LINE L1 6759 6806 -667 9 1699 613 200 48 0 chr5 146040901 146041026 -6496233 + RSINE1 SINE B4 2 132 -33 1 1699 316 217 0 0 chr5 146041049 146041118 -6496141 + Lx8 LINE L1 6793 6861 -612 9 1699 183 42 0 0 chr5 146041144 146041168 -6496091 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1 1699 226 265 0 14 chr5 146041395 146041464 -6495795 + (CGGGG)n Simple_repeat Simple_repeat 1 68 0 1 1699 746 230 7 0 chr5 146042160 146042308 -6494951 - B1_Mur2 SINE Alu 0 149 1 1 1699 353 216 11 0 chr5 146042333 146042421 -6494838 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 1 1699 1394 81 27 0 chr5 146042444 146042629 -6494630 - B2_Mm2 SINE B2 -4 191 2 1 1699 749 161 64 153 chr5 146042630 146042865 -6494394 - B3 SINE B2 -2 214 1 1 1699 221 233 33 16 chr5 146043045 146043106 -6494153 + CT-rich Low_complexity Low_complexity 3 64 0 1 1699 2317 203 31 21 chr5 146043257 146043739 -6493520 - Lx8 LINE L1 -333 7140 6654 1 1699 638 250 57 26 chr5 146043799 146043992 -6493267 - RMER15-int LTR ERVL -539 4460 4262 1 1699 197 281 118 59 chr5 146044011 146044113 -6493146 + L2 LINE L2 2589 2696 -723 1 1699 466 287 128 24 chr5 146044815 146045065 -6492194 + B4 SINE B4 1 276 -16 1 1699 287 286 12 0 chr5 146045075 146045159 -6492100 + (CA)n Simple_repeat Simple_repeat 1 85 0 1 1699 473 310 80 34 chr5 146045486 146045723 -6491536 + B4A SINE B4 2 249 -43 1 1699 203 236 54 27 chr5 146045749 146045823 -6491436 + (CATG)n Simple_repeat Simple_repeat 3 78 0 1 1699 1046 31 0 0 chr5 146045830 146045957 -6491302 + B1_Mus1 SINE Alu 20 146 -2 1 1699 266 248 84 78 chr5 146045832 146045998 -6491261 - YREP_Mm Unknown Unknown -1516 296 130 1 1699 794 179 0 28 chr5 146045996 146046140 -6491119 + B1_Mus1 SINE Alu 9 148 0 1 1699 979 189 87 0 chr5 146046168 146046353 -6490906 - B3 SINE B2 -14 202 2 1 1699 1474 73 16 0 chr5 146046605 146046796 -6490463 + B2_Mm2 SINE B2 2 195 0 1 1699 230 290 14 0 chr5 146046810 146046865 -6490394 + polypyrimidine Low_complexity Low_complexity 16 71 0 1 1699 723 231 26 62 chr5 146046865 146047091 -6490168 - ID_B1 SINE B4 -4 220 3 1 1699 230 290 14 0 chr5 146047091 146047104 -6490155 + polypyrimidine Low_complexity Low_complexity 3 15 0 1 1699 207 0 0 0 chr5 146047537 146047560 -6489699 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1699 1196 68 0 0 chr5 146047563 146047710 -6489549 - B1_Mm SINE Alu 0 147 1 1 1699 300 27 0 0 chr5 146047882 146047919 -6489340 + (GA)n Simple_repeat Simple_repeat 2 38 0 1 1699 235 282 45 72 chr5 146048315 146048426 -6488833 - RSINE1 SINE B4 -14 151 44 1 1699 569 255 30 43 chr5 146048672 146048836 -6488423 - RSINE1 SINE B4 -1 164 3 1 1699 926 198 42 33 chr5 146048861 146049005 -6488254 - B3 SINE B2 0 216 80 1 1699 450 0 0 0 chr5 146049005 146049055 -6488204 + (TG)n Simple_repeat Simple_repeat 1 50 0 1 1699 926 198 42 33 chr5 146049055 146049124 -6488135 - B3 SINE B2 -137 79 2 1 1699 565 235 33 26 chr5 146049917 146050070 -6487189 - B4A SINE B4 -137 155 2 1 1699 305 250 16 0 chr5 146050306 146050370 -6486889 + PB1D7 SINE Alu 56 120 0 1 1699 908 135 36 24 chr5 146050911 146051078 -6486181 + URR1A DNA MER1_type 58 226 0 1 1699 398 139 14 0 chr5 146052336 146052408 -6484851 + CT-rich Low_complexity Low_complexity 3 75 0 1 1699 942 265 9 5 chr5 146052426 146052646 -6484613 - ID_B1 SINE B4 -1 223 3 1 1699 203 240 20 0 chr5 146052701 146052757 -6484502 - L2b LINE L2 -2 3385 3325 1 1699 438 226 0 88 chr5 146053316 146053452 -6483807 - PB1 SINE Alu -3 124 1 1 1699 229 295 30 50 chr5 146053463 146053563 -6483696 - L2b LINE L2 -2 3373 3276 1 1699 218 213 21 0 chr5 146053569 146053616 -6483643 + B3A SINE B2 2 49 -149 1 1699 3263 37 35 0 chr5 146053609 146054011 -6483248 - RLTR10C LTR ERVK -20 416 1 1 1699 310 278 0 94 chr5 146054022 146054149 -6483110 + B3A SINE B2 83 197 -1 1 1699 614 285 43 32 chr5 146054164 146054349 -6482910 + B3A SINE B2 3 189 -9 1 1699 534 191 21 0 chr5 146054442 146054536 -6482723 - PB1D9 SINE Alu -2 118 23 1 1699 270 0 0 0 chr5 146054693 146054723 -6482536 + (A)n Simple_repeat Simple_repeat 1 30 0 1 1699 447 277 25 25 chr5 146054723 146054845 -6482414 - MTE2a LTR MaLR -43 336 215 1 1699 234 271 97 28 chr5 146054819 146054891 -6482368 + B3A SINE B2 58 134 -64 1 1699 666 308 32 29 chr5 146055060 146055341 -6481918 + B4A SINE B4 1 282 -10 1 1699 417 39 0 0 chr5 146055441 146055492 -6481767 + (TG)n Simple_repeat Simple_repeat 1 51 0 1 1699 384 293 142 31 chr5 146055510 146055637 -6481622 - RSINE1 SINE B4 -22 143 3 1 1699 450 244 0 0 chr5 146055835 146055917 -6481342 + B4 SINE B4 1 82 -210 1 1699 236 301 40 96 chr5 146055917 146055960 -6481299 + B2_Mm2 SINE B2 1 118 -77 1 1699 477 0 0 0 chr5 146056185 146056238 -6481021 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 1 1699 3969 179 98 108 chr5 146056253 146056781 -6480478 + L1_Mur3 LINE L1 4670 5245 -635 1 1699 387 177 0 81 chr5 146056781 146056854 -6480405 + B1_Mm SINE Alu 69 138 -9 1 1699 356 55 0 18 chr5 146056854 146056910 -6480349 + (CCAA)n Simple_repeat Simple_repeat 2 56 0 1 1699 387 177 0 81 chr5 146056910 146056922 -6480337 + B1_Mm SINE Alu 139 147 0 1 1699 3969 179 98 108 chr5 146056922 146057435 -6479824 + L1_Mur3 LINE L1 5246 5785 -95 1 1699 4493 88 17 123 chr5 146057437 146058262 -6478997 - Lx3_Mus LINE L1 -396 6613 5877 1 1699 2256 95 53 32 chr5 146058262 146058642 -6478617 + Lx3_Mus LINE L1 6622 7009 0 1 1699 4493 88 17 123 chr5 146058642 146058655 -6478604 - Lx3_Mus LINE L1 -1133 5876 5864 1 1699 300 111 0 0 chr5 146058663 146058708 -6478551 + (CGTG)n Simple_repeat Simple_repeat 2 46 0 1 1699 432 234 21 21 chr5 146058708 146058804 -6478455 - RSINE1 SINE B4 -41 124 29 1 1699 329 228 68 19 chr5 146058846 146058949 -6478310 - B3 SINE B2 -6 210 103 1 1699 443 284 37 11 chr5 146059354 146059544 -6477715 + B3A SINE B2 1 202 -14 1 1699 242 305 0 0 chr5 146059545 146059604 -6477655 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1699 219 261 15 0 chr5 146059911 146059976 -6477283 + (CATATA)n Simple_repeat Simple_repeat 5 70 0 1 1699 808 197 14 0 chr5 146060156 146060303 -6476956 - B1_Mur4 SINE Alu -1 149 1 1 1699 2884 57 91 0 chr5 146060327 146060713 -6476546 + BGLII LTR ERVK 1 421 0 1 1699 1131 228 130 58 chr5 146060867 146061253 -6476006 + MTD LTR MaLR 5 403 -16 1 1699 755 276 28 9 chr5 146061642 146061854 -6475405 + ID_B1 SINE B4 1 216 -8 1 1699 533 55 14 0 chr5 146061866 146061939 -6475320 + (CAAAC)n Simple_repeat Simple_repeat 2 75 0 1 1699 839 91 28 28 chr5 146061976 146062156 -6475103 + (TTCTC)n Simple_repeat Simple_repeat 1 180 0 1 1699 461 62 15 0 chr5 146062152 146062217 -6475042 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1699 817 250 11 0 chr5 146062218 146062394 -6474865 - B3A SINE B2 -20 178 1 1 1699 2363 95 128 6 chr5 146062627 146062986 -6474273 - RLTR9D LTR ERVK 0 403 1 1 1699 437 122 27 13 chr5 146062986 146063061 -6474198 - ETnERV2-int LTR ERVK 0 7406 7331 1 1699 9134 156 71 35 chr5 146063271 146066211 -6471048 - ETnERV2-int LTR ERVK -1804 5440 1653 1 1699 649 113 19 0 chr5 146066236 146066342 -6470917 - ETnERV2-int LTR ERVK -5321 2085 1978 1 1699 2417 168 59 73 chr5 146066342 146067246 -6470013 - RLTR13D1 LTR ERVK 0 855 10 1 1699 5274 103 85 14 chr5 146067254 146068094 -6469165 - ETnERV2-int LTR ERVK -5423 1983 1083 1 1699 498 33 0 0 chr5 146068094 146068154 -6469105 + (TTTTA)n Simple_repeat Simple_repeat 4 63 0 1 1699 1054 214 43 75 chr5 146068234 146068582 -6468677 - ETnERV2-int LTR ERVK -2975 339 3 1 1699 2833 99 23 5 chr5 146068584 146068980 -6468279 - RLTR9D LTR ERVK 0 403 1 1 1699 799 161 29 35 chr5 146068980 146069154 -6468105 - ORR1D1 LTR MaLR -33 341 169 1 1699 1543 236 77 60 chr5 146069163 146069229 -6468030 - RLTR20A LTR ERVK 0 541 451 1 1699 576 0 0 0 chr5 146069229 146069293 -6467966 + (CA)n Simple_repeat Simple_repeat 2 65 0 1 1699 1543 236 77 60 chr5 146069293 146069758 -6467501 - RLTR20A LTR ERVK -91 450 1 1 1699 487 250 17 17 chr5 146069786 146069904 -6467355 - ORR1D1 LTR MaLR -225 145 28 1 1699 13929 86 13 6 chr5 146070007 146072656 -6464603 - L1_Mus1 LINE L1 -1 6566 3898 1 1699 411 279 36 9 chr5 146072771 146072883 -6464376 - B1F SINE Alu -31 118 4 1 1699 236 236 13 77 chr5 146072825 146072903 -6464356 - B4A SINE B4 -147 145 73 1 1699 391 321 77 62 chr5 146072971 146073230 -6464029 - B4 SINE B4 -28 264 2 1 1699 663 317 50 75 chr5 146073256 146073617 -6463642 + ORR1E LTR MaLR 1 352 -7 1 1699 1275 109 11 5 chr5 146073620 146073805 -6463454 - B2_Mm2 SINE B2 -9 186 1 1 1699 843 233 11 0 chr5 146073841 146074021 -6463238 + B3 SINE B2 1 182 -34 1 1699 734 170 7 45 chr5 146074313 146074325 -6462934 - B1_Mur4 SINE Alu -2 148 139 1 1699 186 43 0 0 chr5 146074325 146074348 -6462911 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1 1699 734 170 7 45 chr5 146074348 146074489 -6462770 - B1_Mur4 SINE Alu -12 138 1 1 1699 207 0 0 0 chr5 146074494 146074517 -6462742 + (TTA)n Simple_repeat Simple_repeat 1 23 0 1 1699 619 257 13 26 chr5 146074553 146074705 -6462554 - RSINE1 SINE B4 -12 153 4 1 1699 1287 271 91 37 chr5 146075178 146075667 -6461592 + Lx9 LINE L1 6947 7456 -188 1 1699 279 0 0 0 chr5 146075667 146075698 -6461561 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1699 505 301 83 35 chr5 146075698 146075748 -6461511 + Lx9 LINE L1 7333 7388 -85 1 1699 2814 40 49 72 chr5 146075756 146076161 -6461098 + MTA_Mm LTR MaLR 1 396 0 1 1699 2047 46 7 7 chr5 146076161 146076446 -6460813 + MTA_Mm-int LTR MaLR 1 285 -813 1 1699 3476 63 43 21 chr5 146076418 146076953 -6460306 + MTA_Mm-int LTR MaLR 552 1098 0 1 1699 3337 38 8 5 chr5 146076953 146077348 -6459911 + MTA_Mm LTR MaLR 1 396 0 1 1699 1351 291 67 38 chr5 146077504 146078029 -6459230 - Lx8 LINE L1 -1 7472 6933 1 1699 575 289 33 62 chr5 146078101 146078377 -6458882 - MTE-int LTR MaLR -28 1552 1285 1 1699 875 167 7 0 chr5 146078377 146078515 -6458744 + B1_Mus1 SINE Alu 4 142 -6 1 1699 210 37 0 0 chr5 146078552 146078579 -6458680 + (CCTA)n Simple_repeat Simple_repeat 1 27 0 1 1699 366 33 50 0 chr5 146078579 146078639 -6458620 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1 1699 688 175 62 49 chr5 146078671 146078815 -6458444 + B1_Mus1 SINE Alu 2 147 -1 1 1699 470 355 71 49 chr5 146078832 146079282 -6457977 - MTE-int LTR MaLR -273 1307 848 1 1699 553 286 23 0 chr5 146079772 146079905 -6457354 - B1F2 SINE Alu -5 144 9 1 1699 247 283 35 99 chr5 146079792 146079933 -6457326 - MT2B LTR ERVL -324 277 146 1 1699 510 304 14 37 chr5 146080077 146080349 -6456910 - L1_Mur3 LINE L1 -2696 3151 2886 1 1699 392 206 0 42 chr5 146080351 146080447 -6456812 - L1M2 LINE L1 -2397 3746 3655 1 1699 14064 148 42 29 chr5 146080447 146084007 -6453252 - L1VL2 LINE L1 -281 3334 9 2 1699 286 23 23 23 chr5 146084007 146084051 -6453208 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 1699 2751 49 0 141 chr5 146084372 146084797 -6452462 + RLTR10B2 LTR ERVK 1 365 0 2 1699 1277 83 0 6 chr5 146084797 146084967 -6452292 + MMERVK10C-int LTR ERVK 1 169 -7412 2 1699 269 250 0 0 chr5 146084967 146085023 -6452236 + RLTR27 LTR ERVK 220 275 -34 2 1699 873 127 0 0 chr5 146085023 146085149 -6452110 + MMERVK10C-int LTR ERVK 225 350 -7231 2 1699 1111 148 15 99 chr5 146085167 146085429 -6451830 + MMERVK10C-int LTR ERVK 713 952 -6629 2 1699 1293 183 126 7 chr5 146085491 146085793 -6451466 + MMERVK10C-int LTR ERVK 274 611 -4795 2 1699 330 232 154 47 chr5 146085789 146085938 -6451321 + MMERVK10C-int LTR ERVK 524 688 -5449 2 1699 436 148 123 0 chr5 146085925 146086006 -6451253 + MMERVK10C-int LTR ERVK 938 1028 -5109 2 1699 430 79 0 0 chr5 146085997 146086060 -6451199 + MMERVK10C-int LTR ERVK 1885 1947 -5634 2 1699 9470 55 0 0 chr5 146086057 146087184 -6450075 + MMERVK10C-int LTR ERVK 2513 3639 -3942 2 1699 2502 55 0 36 chr5 146087184 146087541 -6449718 + RLTR10B2 LTR ERVK 22 365 0 2 1699 274 256 103 11 chr5 146087566 146087653 -6449606 + B4A SINE B4 184 278 -14 2 1699 595 233 44 22 chr5 146088485 146088621 -6448638 - B1_Mur2 SINE Alu -9 140 2 2 1699 505 263 37 74 chr5 146089346 146089535 -6447724 + RMER30 DNA MER1_type 20 201 -1 2 1699 590 80 23 0 chr5 146089590 146089678 -6447581 + (TATG)n Simple_repeat Simple_repeat 3 92 0 2 1699 192 40 0 0 chr5 146089939 146089964 -6447295 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 1699 1041 212 24 0 chr5 146090067 146090279 -6446980 - Lx4B LINE L1 -4 7054 6838 2 1699 509 229 9 0 chr5 146090280 146090389 -6446870 + RLTR16 LTR ERVK 1 110 -395 2 1699 2634 145 16 41 chr5 146090389 146090900 -6446359 - RLTR13C1 LTR ERVK -296 687 190 2 1699 2214 87 60 17 chr5 146090900 146091252 -6446007 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1699 55682 30 13 4 chr5 146091252 146097667 -6439592 + IAPEz-int LTR ERVK 8 6479 -2 2 1699 2214 87 60 17 chr5 146097669 146098021 -6439238 + IAPLTR1_Mm LTR ERVK 1 367 0 2 1699 1358 106 0 0 chr5 146098021 146098219 -6439040 - RLTR13C1 LTR ERVK -916 198 1 2 1699 5102 211 62 48 chr5 146098220 146099620 -6437639 - ETnERV2-int LTR ERVK -3939 3467 1417 2 1699 643 218 7 14 chr5 146099641 146099785 -6437474 + RMER15 LTR ERVL 340 482 -93 2 1699 581 276 11 22 chr5 146100711 146100889 -6436370 - Lx7 LINE L1 -414 7282 7107 2 1699 2133 173 42 12 chr5 146100914 146101323 -6435936 + MTC LTR MaLR 1 421 0 2 1699 2276 156 59 5 chr5 146101382 146101756 -6435503 + ORR1B1 LTR MaLR 1 394 0 2 1699 21 57 0 0 chr5 146101803 146101838 -6435421 + AT_rich Low_complexity Low_complexity 1 35 0 2 1699 389 287 0 34 chr5 146102148 146102267 -6434992 + Lx8 LINE L1 7005 7119 -354 2 1699 874 249 49 0 chr5 146102315 146102520 -6434739 + B3 SINE B2 2 216 0 2 1699 516 32 0 0 chr5 146102613 146102675 -6434584 + (GA)n Simple_repeat Simple_repeat 2 63 0 2 1699 652 243 86 0 chr5 146102836 146102988 -6434271 + B3 SINE B2 1 165 -51 2 1699 434 96 0 14 chr5 146102992 146103066 -6434193 + (CATA)n Simple_repeat Simple_repeat 2 74 0 2 1699 393 300 94 58 chr5 146103555 146103831 -6433428 + B4A SINE B4 5 290 -2 2 1699 1203 152 67 0 chr5 146104444 146104654 -6432605 + URR1B DNA MER1_type 1 224 -1 2 1699 186 71 0 0 chr5 146104734 146104762 -6432497 + (T)n Simple_repeat Simple_repeat 1 28 0 2 1699 29 28 0 0 chr5 146105524 146105560 -6431699 + AT_rich Low_complexity Low_complexity 1 36 0 2 1699 447 268 45 0 chr5 146105571 146105683 -6431576 + Lx8 LINE L1 6935 7051 -422 2 1699 807 249 72 121 chr5 146106555 146106757 -6430502 + MTE2a LTR MaLR 1 160 -219 2 1699 540 0 0 0 chr5 146106757 146106817 -6430442 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1699 807 249 72 121 chr5 146106817 146107002 -6430257 + MTE2a LTR MaLR 161 369 -10 2 1699 1648 181 94 37 chr5 146107214 146107597 -6429662 - MTD LTR MaLR -14 405 1 2 1699 896 164 0 12 chr5 146107750 146107923 -6429336 + CT-rich Low_complexity Low_complexity 2 172 0 2 1699 1869 108 33 27 chr5 146107940 146108278 -6428981 + ORR1A2 LTR MaLR 1 338 -8 2 1699 955 216 40 5 chr5 146108481 146108681 -6428578 + B3 SINE B2 3 209 -7 2 1699 1511 154 171 28 chr5 146109091 146109412 -6427847 - ORR1B2 LTR MaLR 0 367 1 2 1699 733 224 0 7 chr5 146110336 146110480 -6426779 - B1_Mus1 SINE Alu -5 143 1 2 1699 723 251 77 0 chr5 146110544 146110727 -6426532 - B3 SINE B2 -19 197 1 2 1699 513 246 23 23 chr5 146110740 146110873 -6426386 - B1_Mur1 SINE Alu -3 146 14 2 1699 835 132 81 0 chr5 146110879 146111015 -6426244 + B1_Mur3 SINE Alu 3 149 0 2 1699 1566 143 11 25 chr5 146111741 146112021 -6425238 - RLTR11B LTR ERVK 0 453 178 2 1699 307 349 29 12 chr5 146112297 146112468 -6424791 + RLTR15 LTR ERVK 58 231 -128 2 1699 3061 169 60 5 chr5 146113082 146113168 -6424091 - MurERV4-int LTR ERVK -3137 2123 2038 2 1699 468 0 0 0 chr5 146113168 146113220 -6424039 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 1699 3061 169 60 5 chr5 146113220 146113686 -6423573 - MurERV4-int LTR ERVK -3223 2037 1543 2 1699 2352 272 73 33 chr5 146113692 146114597 -6422662 - MurERV4-int LTR ERVK -4159 1101 40 2 1699 28151 133 15 15 chr5 146115071 146121044 -6416215 + L1_Mus3 LINE L1 693 6637 -1 2 1699 825 252 34 5 chr5 146121104 146121311 -6415948 - ID_B1 SINE B4 -2 222 10 2 1699 382 184 13 0 chr5 146121412 146121488 -6415771 - Lx4A LINE L1 -324 6734 6658 2 1699 357 226 26 75 chr5 146121601 146121716 -6415543 - B1F2 SINE Alu -1 116 12 2 1699 340 208 12 38 chr5 146121651 146121731 -6415528 - ID_B1 SINE B4 -69 155 78 2 1699 924 184 145 0 chr5 146121743 146121922 -6415337 - B3 SINE B2 -11 205 1 2 1699 3430 144 19 15 chr5 146122244 146122765 -6414494 + Lx4A LINE L1 6535 7057 -1 2 1699 805 299 11 30 chr5 146123249 146123408 -6413851 - Lx8 LINE L1 -360 7113 6960 2 1699 2541 158 36 22 chr5 146123408 146123822 -6413437 + MTC LTR MaLR 2 421 0 2 1699 805 299 11 30 chr5 146123822 146123928 -6413331 - Lx8 LINE L1 -514 6959 6853 2 1699 257 292 25 50 chr5 146123928 146124047 -6413212 - URR1B DNA MER1_type 0 225 110 2 1699 373 292 67 0 chr5 146124222 146124342 -6412917 + Lx8 LINE L1 7118 7245 -228 2 1699 2939 198 75 26 chr5 146124369 146124981 -6412278 - RLTR26 LTR ERVK 0 642 1 2 1699 387 0 0 0 chr5 146125039 146125082 -6412177 + (GA)n Simple_repeat Simple_repeat 2 44 0 2 1699 407 328 62 33 chr5 146125146 146125386 -6411873 - Lx8 LINE L1 -266 7207 6961 2 1699 638 344 5 0 chr5 146125380 146125595 -6411664 + Lx8 LINE L1 6737 6952 -521 2 1699 203 300 48 48 chr5 146125832 146125937 -6411322 + L2b LINE L2 3247 3351 -24 2 1699 352 261 90 0 chr5 146126083 146126194 -6411065 - BC1_Mm scRNA scRNA -30 122 2 2 1699 2069 159 135 0 chr5 146126620 146126953 -6410306 - ORR1C1 LTR MaLR 0 378 1 2 1699 447 19 0 0 chr5 146127039 146127091 -6410168 + (CA)n Simple_repeat Simple_repeat 1 52 0 2 1699 1274 141 10 5 chr5 146127176 146127368 -6409891 + B2_Mm2 SINE B2 1 193 -2 2 1699 180 0 0 0 chr5 146127372 146127392 -6409867 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 2 1699 931 251 137 39 chr5 146127393 146127700 -6409559 - MTD LTR MaLR -30 389 53 2 1699 647 243 7 28 chr5 146127870 146128014 -6409245 - ID_B1 SINE B4 -81 143 3 2 1699 630 327 88 50 chr5 146128053 146128222 -6409037 - L1MD LINE L1 -1116 5030 4852 2 1699 977 238 48 0 chr5 146128222 146128428 -6408831 + B3 SINE B2 1 216 0 2 1699 630 327 88 50 chr5 146128428 146129234 -6408025 - L1MD LINE L1 -1295 4851 4018 2 1699 462 65 0 0 chr5 146129247 146129309 -6407950 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 2 1699 3534 179 45 31 chr5 146130233 146130550 -6406709 + RMER6D LTR ERVK 3 318 -402 2 1699 2427 147 59 19 chr5 146130550 146130974 -6406285 - BGLII_B LTR ERVK 0 441 1 2 1699 3534 179 45 31 chr5 146130974 146131023 -6406236 + RMER6D LTR ERVK 319 384 -336 2 1699 537 16 0 0 chr5 146131023 146131085 -6406174 + (TGG)n Simple_repeat Simple_repeat 2 63 0 2 1699 447 19 0 0 chr5 146131086 146131138 -6406121 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1699 3534 179 45 31 chr5 146131138 146131476 -6405783 + RMER6D LTR ERVK 385 720 0 2 1699 412 352 52 14 chr5 146132361 146132649 -6404610 - L1M4 LINE L1 -411 5767 5469 2 1699 264 212 50 128 chr5 146132711 146132890 -6404369 - Lx9 LINE L1 0 7644 7480 2 1699 885 332 45 37 chr5 146132901 146133411 -6403848 - Lx9 LINE L1 -130 7514 7001 2 1699 22 0 0 0 chr5 146134191 146134213 -6403046 + AT_rich Low_complexity Low_complexity 1 22 0 2 1699 971 236 14 24 chr5 146134744 146134957 -6402302 - B3 SINE B2 -5 211 1 2 1699 319 175 60 26 chr5 146136011 146136128 -6401131 + (TG)n Simple_repeat Simple_repeat 2 122 0 2 1699 754 86 6 44 chr5 146136130 146136288 -6400971 + (TATG)n Simple_repeat Simple_repeat 4 155 0 2 1699 603 293 89 57 chr5 146136290 146136572 -6400687 - B4A SINE B4 0 292 2 2 1699 283 371 12 59 chr5 146136625 146136794 -6400465 - RSINE1 SINE B4 -2 163 3 2 1699 786 215 73 6 chr5 146137043 146137207 -6400052 - MTEb LTR MaLR -97 282 108 2 1699 326 193 333 0 chr5 146137208 146137316 -6399943 + B3 SINE B2 2 145 -71 2 1699 414 0 0 0 chr5 146137316 146137362 -6399897 + (CA)n Simple_repeat Simple_repeat 2 47 0 2 1699 351 307 0 0 chr5 146137430 146137531 -6399728 - MTEb LTR MaLR -278 101 1 2 1699 1072 224 5 64 chr5 146137691 146137910 -6399349 + B3 SINE B2 1 206 -10 2 1699 3887 212 49 35 chr5 146138531 146139048 -6398211 - RMER17B LTR ERVK -1 957 440 2 1699 516 45 0 0 chr5 146139048 146139115 -6398144 + (GA)n Simple_repeat Simple_repeat 2 68 0 2 1699 3887 212 49 35 chr5 146139115 146139541 -6397718 - RMER17B LTR ERVK -519 439 1 2 1699 342 0 0 0 chr5 146140079 146140117 -6397142 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1699 476 286 0 0 chr5 146140122 146140220 -6397039 - RSINE1 SINE B4 -15 150 53 2 1699 207 100 0 0 chr5 146140726 146140756 -6396503 + (TC)n Simple_repeat Simple_repeat 2 31 0 2 1699 447 282 65 47 chr5 146140756 146141083 -6396176 - L1MA4 LINE L1 -279 6024 5682 2 1699 2075 161 63 16 chr5 146142392 146142427 -6394832 - ORR1C2 LTR MaLR 0 384 350 2 1699 2007 195 22 65 chr5 146142427 146142839 -6394420 + ORR1B1 LTR MaLR 1 394 0 2 1699 2075 161 63 16 chr5 146142839 146143170 -6394089 - ORR1C2 LTR MaLR -35 349 1 2 1699 3497 186 14 24 chr5 146143170 146143832 -6393427 - ORR1C2-int LTR MaLR 0 1509 855 2 1699 2313 214 108 18 chr5 146143831 146144398 -6392861 - ORR1C2-int LTR MaLR -891 618 1 2 1699 1947 169 62 27 chr5 146144398 146144608 -6392651 - ORR1C2 LTR MaLR 0 384 171 2 1699 897 60 0 0 chr5 146144608 146144724 -6392535 + (GA)n Simple_repeat Simple_repeat 1 116 0 2 1699 1947 169 62 27 chr5 146144724 146144883 -6392376 - ORR1C2 LTR MaLR -214 170 2 2 1699 331 270 137 81 chr5 146144965 146144983 -6392276 - B2_Mm2 SINE B2 -25 170 154 2 1699 717 45 0 0 chr5 146144983 146145072 -6392187 + (GA)n Simple_repeat Simple_repeat 1 89 0 2 1699 486 270 137 81 chr5 146145072 146145214 -6392045 - B3A SINE B2 -42 153 1 2 1700 822 204 14 0 chr5 146145607 146145749 -6391510 - RSINE1 SINE B4 -19 146 3 2 1700 222 118 0 0 chr5 146146434 146146468 -6390791 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 1700 764 317 41 34 chr5 146146533 146146801 -6390458 - B4 SINE B4 -22 270 1 3 1700 1257 55 7 0 chr5 146147053 146147198 -6390061 - B1_Mus2 SINE Alu 0 147 2 3 1700 1018 193 255 33 chr5 146148078 146148216 -6389043 - ORR1D1 LTR MaLR 0 374 210 3 1700 482 0 17 0 chr5 146148216 146148274 -6388985 + (GA)n Simple_repeat Simple_repeat 1 59 0 3 1700 1018 193 255 33 chr5 146148274 146148441 -6388818 - ORR1D1 LTR MaLR -165 209 1 3 1700 198 303 15 15 chr5 146148752 146148819 -6388440 - MER5B DNA MER1_type 0 178 112 3 1700 451 298 68 40 chr5 146149229 146149633 -6387626 - RLTR15 LTR ERVK -68 291 3 3 1700 27 29 0 0 chr5 146149831 146149865 -6387394 + AT_rich Low_complexity Low_complexity 1 34 0 3 1700 1791 191 112 9 chr5 146150010 146150358 -6386901 + ORR1C2 LTR MaLR 1 384 0 3 1700 1418 237 78 17 chr5 146152118 146152466 -6384793 + MTE2b LTR MaLR 8 376 -3 3 1700 991 276 122 60 chr5 146152595 146153046 -6384213 - RMER19C LTR ERVK -48 563 85 3 1700 472 327 80 7 chr5 146153128 146153278 -6383981 + B4A SINE B4 70 230 -62 3 1700 437 331 31 55 chr5 146153278 146153441 -6383818 + RSINE1 SINE B4 3 161 -4 3 1700 256 294 0 14 chr5 146153464 146153533 -6383726 + B4A SINE B4 221 288 -4 3 1700 11221 67 2 6 chr5 146153703 146155865 -6381394 - L1Md_F2 LINE L1 -3 6579 4427 3 1700 29890 64 1 4 chr5 146155865 146160449 -6376810 - L1Md_F2 LINE L1 -12 6570 2001 3 1700 2824 53 21 0 chr5 146160590 146160927 -6376332 - L1Md_F2 LINE L1 0 6582 6239 3 1700 534 132 17 78 chr5 146160930 146161045 -6376214 - L1Md_F2 LINE L1 -3889 1994 1887 3 1700 2299 116 24 3 chr5 146161023 146161360 -6375899 - L1Md_F2 LINE L1 -5919 697 354 3 1700 1112 103 7 0 chr5 146161454 146161600 -6375659 - B1_Mus2 SINE Alu 0 147 1 3 1700 1396 130 35 0 chr5 146162324 146162554 -6374705 - L1_Mur2 LINE L1 -682 5195 4958 3 1700 779 145 8 15 chr5 146162692 146162825 -6374434 - B1_Mus2 SINE Alu -5 142 11 3 1700 253 47 0 44 chr5 146163072 146163117 -6374142 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 3 1700 1073 117 7 0 chr5 146163126 146163271 -6373988 - B1_Mus1 SINE Alu -2 146 1 3 1700 316 260 9 9 chr5 146163296 146163401 -6373858 - Lx8 LINE L1 -4 7469 7365 3 1700 366 318 124 82 chr5 146164685 146164918 -6372341 - B4 SINE B4 -49 243 1 3 1700 262 267 27 0 chr5 146164951 146165026 -6372233 + Charlie1 DNA MER1_type 773 849 -1932 3 1700 962 232 42 120 chr5 146165026 146165335 -6371924 - RLTR19 LTR ERVK -1 498 211 3 1700 261 326 11 33 chr5 146165960 146166144 -6371115 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1700 23 33 0 0 chr5 146166247 146166277 -6370982 + AT_rich Low_complexity Low_complexity 1 30 0 3 1700 7858 152 39 24 chr5 146166277 146168335 -6368924 - Lx5 LINE L1 -5 7045 4958 3 1700 897 161 21 0 chr5 146168475 146168618 -6368641 - B1_Mur3 SINE Alu -1 148 3 3 1700 290 26 0 25 chr5 146168861 146168901 -6368358 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 3 1700 1131 94 0 0 chr5 146168901 146169039 -6368220 - B1_Mus1 SINE Alu -10 138 1 3 1700 1138 273 136 91 chr5 146169064 146169689 -6367570 - Lx8 LINE L1 -4 7469 6817 3 1700 404 248 152 80 chr5 146169730 146170019 -6367240 - L1_Mur3 LINE L1 -345 5535 5226 3 1700 1150 96 7 0 chr5 146170087 146170233 -6367026 - B1_Mus2 SINE Alu 0 147 1 3 1700 250 281 22 45 chr5 146170338 146170472 -6366787 + T-rich Low_complexity Low_complexity 2 132 0 3 1700 1140 277 38 28 chr5 146170710 146171107 -6366152 + RLTR20B2 LTR ERVK 98 498 -62 3 1700 786 257 90 12 chr5 146171161 146171405 -6365854 + Lx8 LINE L1 7210 7472 -1 3 1700 998 286 13 76 chr5 146171503 146171896 -6365363 + Lx7 LINE L1 6479 6846 -850 3 1700 237 336 106 8 chr5 146172089 146172212 -6365047 - MIRb SINE MIR -46 222 88 3 1700 1806 231 124 15 chr5 146172289 146172829 -6364430 - Lx9 LINE L1 -15 7629 6873 3 1700 689 324 5 5 chr5 146173178 146173383 -6363876 + B3 SINE B2 1 205 -11 3 1700 221 347 73 23 chr5 146173795 146173972 -6363287 + B2_Mm1t SINE B2 3 188 -5 3 1700 841 163 7 0 chr5 146173979 146174114 -6363145 - B1_Mur3 SINE Alu 0 149 14 3 1700 4364 163 21 12 chr5 146174139 146174903 -6362356 + Lx4B LINE L1 6075 6845 -213 3 1700 991 290 69 31 chr5 146175034 146175457 -6361802 - RLTR16 LTR ERVK -12 493 55 3 1700 556 50 247 0 chr5 146175457 146175610 -6361649 + L1Md_F3 LINE L1 6394 6584 0 3 1700 620 167 10 0 chr5 146175656 146175758 -6361501 + Lx4B LINE L1 6837 6939 -119 3 1700 2906 64 3 0 chr5 146175758 146176102 -6361157 + IAPLTR4 LTR ERVK 1 345 0 3 1700 1029 282 105 72 chr5 146176102 146176752 -6360507 + IAPLTR3-int LTR ERVK 1 671 -6150 3 1700 3628 215 12 15 chr5 146176735 146177709 -6359550 + IAPLTR3-int LTR ERVK 585 1519 -5302 3 1700 401 162 8 93 chr5 146177676 146177805 -6359454 + MMERVK10C-int LTR ERVK 835 952 -6629 3 1700 1472 201 108 44 chr5 146177917 146178396 -6358863 + RMER16-int LTR ERVK 251 819 -4587 3 1700 477 221 88 0 chr5 146178401 146178514 -6358745 + RMER16-int LTR ERVK 938 1060 -5077 3 1700 649 243 372 29 chr5 146178527 146178750 -6358509 + ETnERV2-int LTR ERVK 2454 2753 -4653 3 1700 2140 136 107 3 chr5 146178776 146179365 -6357894 + ETnERV2-int LTR ERVK 3567 4271 -3135 3 1700 491 173 23 38 chr5 146179370 146179494 -6357765 + MMETn-int LTR ERVK 2357 2464 -2380 3 1700 837 96 35 49 chr5 146179506 146179649 -6357610 + IAPLTR3-int LTR ERVK 4530 4670 -2911 3 1700 5747 251 72 44 chr5 146179906 146182259 -6355000 + IAPLTR3-int LTR ERVK 5176 7257 -423 3 1700 3034 44 3 0 chr5 146182259 146182601 -6354658 + IAPLTR4 LTR ERVK 3 345 0 3 1700 473 203 25 33 chr5 146182601 146182723 -6354536 + Lx4B LINE L1 6934 7054 -4 3 1700 423 0 0 0 chr5 146182852 146182899 -6354360 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1700 318 132 0 0 chr5 146183079 146183132 -6354127 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 3 1700 3917 170 61 4 chr5 146183145 146184212 -6353047 + L1VL2 LINE L1 145 1281 -2334 3 1700 7352 60 10 8 chr5 146184215 146185150 -6352109 + L1_Mm LINE L1 4668 5604 -279 3 1700 3033 113 7 9 chr5 146185150 146185569 -6351690 + L1Md_F2 LINE L1 6152 6569 -13 3 1700 22163 172 20 12 chr5 146185569 146189891 -6347368 + Lx2 LINE L1 1589 5938 -1059 3 1700 3370 168 133 40 chr5 146189891 146190720 -6346539 + RMER17A2 LTR ERVK 1 906 0 3 1700 4698 147 5 23 chr5 146190720 146191151 -6346108 + Lx2 LINE L1 5939 6366 -631 3 1700 530 183 86 17 chr5 146191152 146191269 -6345990 + MTC LTR MaLR 297 421 0 3 1700 338 265 30 20 chr5 146191269 146191369 -6345890 - B4 SINE B4 -191 101 1 3 1700 814 292 25 40 chr5 146191468 146191743 -6345516 + MTEb LTR MaLR 101 371 -8 3 1700 682 325 5 5 chr5 146192175 146192364 -6344895 + B3 SINE B2 12 200 -16 3 1700 893 178 27 0 chr5 146192368 146192514 -6344745 - B1_Mur4 SINE Alu 0 150 1 3 1700 597 257 38 58 chr5 146192816 146193056 -6344203 + L1_Mur3 LINE L1 2716 2950 -2930 3 1700 248 149 0 0 chr5 146193048 146193095 -6344164 + L1MD LINE L1 2942 2988 -3158 3 1700 611 303 9 0 chr5 146193099 146193310 -6343949 + L1_Mur3 LINE L1 2919 3131 -2749 3 1700 516 281 35 21 chr5 146193473 146193615 -6343644 + B1F2 SINE Alu 1 144 -5 3 1700 211 125 77 15 chr5 146194217 146194282 -6342977 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 1700 457 303 21 69 chr5 146194353 146194541 -6342718 - RMER30 DNA MER1_type -11 191 13 3 1700 525 143 4 22 chr5 146194711 146194809 -6342450 - B1_Mus2 SINE Alu 0 150 51 3 1700 409 176 0 13 chr5 146194888 146194963 -6342296 + B4A SINE B4 217 290 -2 3 1700 189 0 0 0 chr5 146194971 146194992 -6342267 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 1700 1147 267 93 20 chr5 146195125 146195522 -6341737 + Lx8 LINE L1 7047 7472 -1 3 1700 21 36 0 0 chr5 146195524 146195552 -6341707 + AT_rich Low_complexity Low_complexity 1 28 0 3 1700 2120 319 78 64 chr5 146195624 146196603 -6340656 + Lx7 LINE L1 6478 7469 -4 3 1700 1854 83 0 4 chr5 146196748 146196979 -6340280 - L1Md_T LINE L1 -1 6581 6352 3 1700 2230 63 0 0 chr5 146198177 146198448 -6338811 + L1Md_F2 LINE L1 5313 5583 -300 3 1700 8118 65 2 8 chr5 146198451 146199451 -6337808 + L1Md_F2 LINE L1 5587 6580 -2 3 1700 792 280 37 0 chr5 146200272 146200461 -6336798 - B3 SINE B2 -11 205 10 3 1700 550 302 76 24 chr5 146200604 146200814 -6336445 - ID_B1 SINE B4 -3 221 1 3 1700 1169 284 102 34 chr5 146201638 146202462 -6334797 + Lx8 LINE L1 6594 7473 0 3 1700 205 213 0 21 chr5 146202660 146202708 -6334551 + CT-rich Low_complexity Low_complexity 3 49 0 3 1700 685 280 33 28 chr5 146203196 146203409 -6333850 - B3 SINE B2 -2 214 1 3 1700 822 323 35 7 chr5 146203433 146203717 -6333542 + B4A SINE B4 1 292 0 3 1700 33361 84 6 5 chr5 146204292 146209404 -6327855 + L1Md_F2 LINE L1 474 5586 -297 3 1700 8363 56 3 1 chr5 146209405 146210388 -6326871 + L1Md_F2 LINE L1 5588 6572 -10 3 1700 310 381 0 30 chr5 146210455 146210555 -6326704 + RSINE1 SINE B4 68 164 -1 3 1700 202 205 0 0 chr5 146210561 146210600 -6326659 + (CATA)n Simple_repeat Simple_repeat 4 42 0 3 1700 212 131 0 21 chr5 146210786 146210833 -6326426 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 1700 250 170 0 21 chr5 146210840 146210936 -6326323 + CT-rich Low_complexity Low_complexity 1 94 0 3 1700 928 265 121 12 chr5 146211708 146211964 -6325295 + B4A SINE B4 1 284 -8 3 1700 795 213 14 0 chr5 146212044 146212185 -6325074 - B1_Mur4 SINE Alu -7 143 1 3 1700 637 297 123 36 chr5 146213040 146213372 -6323887 - Lx8 LINE L1 0 7473 7113 3 1700 463 269 0 107 chr5 146214024 146214145 -6323114 + RSINE1 SINE B4 58 165 0 3 1700 259 111 22 0 chr5 146214148 146214193 -6323066 + B1_Mur4 SINE Alu 105 150 0 3 1700 459 0 0 0 chr5 146214465 146214516 -6322743 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 1700 527 280 46 35 chr5 146214528 146214702 -6322557 + B3 SINE B2 40 215 -1 3 1700 514 243 49 42 chr5 146214732 146214874 -6322385 + B1_Mur4 SINE Alu 1 143 -7 3 1700 987 75 0 0 chr5 146214876 146215022 -6322237 + (GA)n Simple_repeat Simple_repeat 1 146 0 3 1700 308 348 29 10 chr5 146215078 146215284 -6321975 + L1MB8 LINE L1 5547 5756 -418 3 1700 415 230 78 17 chr5 146215339 146215454 -6321805 + L1MB8 LINE L1 5863 5984 -194 3 1700 660 243 164 0 chr5 146215556 146215770 -6321489 + Lx8 LINE L1 6893 7141 -332 3 1700 390 287 8 32 chr5 146216012 146216138 -6321121 + ID_B1 SINE B4 78 200 -24 3 1700 551 244 26 0 chr5 146216029 146216144 -6321115 + B1F2 SINE Alu 11 128 -21 4 1700 306 98 0 0 chr5 146217349 146217400 -6319859 + (TC)n Simple_repeat Simple_repeat 2 52 0 4 1700 317 143 18 18 chr5 146217401 146217458 -6319801 - HAL1-3A_ME LINE L1 -825 2033 1977 4 1700 4509 193 91 28 chr5 146217501 146218355 -6318904 + RMER13B LTR ERVK 1 908 0 4 1700 616 312 132 16 chr5 146218369 146218620 -6318639 - B4A SINE B4 -8 284 5 4 1700 1491 236 52 28 chr5 146218679 146219118 -6318141 + RLTR20C LTR ERVK 4 444 -90 4 1700 334 226 40 16 chr5 146219119 146219245 -6318014 + (TCTG)n Simple_repeat Simple_repeat 2 130 0 4 1700 440 205 0 6 chr5 146219246 146219408 -6317851 + (TG)n Simple_repeat Simple_repeat 2 162 0 4 1700 324 0 0 0 chr5 146219408 146219444 -6317815 + (GA)n Simple_repeat Simple_repeat 1 36 0 4 1700 380 333 44 44 chr5 146219487 146219622 -6317637 - B4A SINE B4 -8 284 150 4 1700 2787 216 66 3 chr5 146219626 146220248 -6317011 + Lx5 LINE L1 5809 6469 -581 4 1700 1379 59 32 5 chr5 146220264 146220451 -6316808 + MTA_Mm LTR MaLR 1 192 -204 4 1700 6416 100 4 1 chr5 146220451 146221350 -6315909 - L1_Mm LINE L1 -688 5195 4294 4 1700 1190 95 0 0 chr5 146221350 146221497 -6315762 + B1_Mm SINE Alu 1 147 0 4 1700 5297 158 4 66 chr5 146221497 146221628 -6315631 - L1_Mur2 LINE L1 -1582 4295 4223 4 1700 4780 135 45 72 chr5 146221628 146223119 -6314140 + Lx LINE L1 5219 6654 0 4 1700 1333 76 38 5 chr5 146223119 146223331 -6313928 + MTA_Mm LTR MaLR 182 400 0 4 1700 2164 230 31 8 chr5 146223331 146223817 -6313442 + Lx5 LINE L1 6543 7039 -11 4 1700 477 0 0 0 chr5 146223817 146223870 -6313389 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1700 321 89 0 0 chr5 146223870 146223914 -6313345 + (TATATG)n Simple_repeat Simple_repeat 1 45 0 4 1700 627 214 0 0 chr5 146224369 146224486 -6312773 + B3A SINE B2 1 117 -81 4 1700 554 162 24 16 chr5 146224496 146224620 -6312639 + B1_Mus2 SINE Alu 19 147 0 4 1700 210 241 56 0 chr5 146224659 146224713 -6312546 + ID2 SINE ID 8 64 -19 4 1700 300 257 29 0 chr5 146225014 146225084 -6312175 + RSINE1 SINE B4 59 130 -35 4 1700 387 295 114 8 chr5 146225104 146225227 -6312032 + RSINE1 SINE B4 2 137 -28 4 1700 378 129 0 0 chr5 146226217 146226279 -6310980 + (TAA)n Simple_repeat Simple_repeat 1 62 0 4 1700 296 77 19 0 chr5 146226741 146226793 -6310466 + (CAA)n Simple_repeat Simple_repeat 2 54 0 4 1700 468 312 0 0 chr5 146226816 146226941 -6310318 + B3A SINE B2 27 151 -47 4 1700 537 44 0 0 chr5 146226943 146227011 -6310248 + (CA)n Simple_repeat Simple_repeat 1 68 0 4 1700 439 316 32 13 chr5 146227521 146227675 -6309584 + RSINE1 SINE B4 3 159 -6 4 1700 363 316 5 38 chr5 146227947 146228131 -6309128 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 4 1700 362 255 131 86 chr5 146228698 146229071 -6308188 + RLTR12B LTR ERVK 48 437 -91 4 1700 477 0 0 0 chr5 146229078 146229131 -6308128 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1700 474 309 53 0 chr5 146229393 146229545 -6307714 + RSINE1 SINE B4 2 161 -4 4 1700 877 289 40 83 chr5 146229686 146230189 -6307070 + RLTR12B LTR ERVK 47 527 -1 4 1700 610 217 8 23 chr5 146230199 146230331 -6306928 - B3 SINE B2 -86 130 1 4 1700 288 317 0 28 chr5 146230889 146230996 -6306263 + ID_B1 SINE B4 116 219 -5 4 1700 226 128 0 0 chr5 146231317 146231356 -6305903 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1700 553 158 24 0 chr5 146231356 146231521 -6305738 + (CAGAGA)n Simple_repeat Simple_repeat 6 174 0 4 1700 2236 234 19 8 chr5 146231548 146232027 -6305232 + Lx5 LINE L1 6536 7019 -31 4 1700 30 0 0 0 chr5 146232527 146232557 -6304702 + AT_rich Low_complexity Low_complexity 1 30 0 4 1700 1313 272 102 19 chr5 146232564 146233044 -6304215 - Lx9 LINE L1 -50 7594 7075 4 1700 707 285 15 20 chr5 146233467 146233671 -6303588 + B3 SINE B2 1 203 -13 4 1700 25 0 0 0 chr5 146233760 146233785 -6303474 + AT_rich Low_complexity Low_complexity 1 25 0 4 1700 460 338 76 0 chr5 146234088 146234233 -6303026 + RSINE1 SINE B4 10 165 0 4 1700 580 216 14 29 chr5 146234260 146234398 -6302861 - B1_Mur3 SINE Alu -1 148 13 4 1700 3760 207 20 18 chr5 146234399 146235187 -6302072 + Lx4B LINE L1 6057 6846 -212 4 1700 788 269 41 38 chr5 146235313 146235630 -6301629 - RLTR16 LTR ERVK -14 491 174 4 1700 261 298 0 0 chr5 146235668 146235725 -6301534 + ID4 SINE ID 14 70 -13 4 1700 694 288 0 20 chr5 146236063 146236258 -6301001 - RLTR16 LTR ERVK -314 191 1 4 1700 326 128 0 0 chr5 146236258 146236305 -6300954 + Lx4B LINE L1 6837 6883 -175 4 1700 3463 165 47 56 chr5 146236314 146237370 -6299889 + RLTR13D1 LTR ERVK 10 1011 -12 4 1700 809 190 16 44 chr5 146237377 146237559 -6299700 + Lx4B LINE L1 6878 7054 -4 4 1700 256 311 117 0 chr5 146237581 146237684 -6299575 + B3 SINE B2 46 160 -56 4 1700 252 0 0 0 chr5 146237693 146237721 -6299538 + (CA)n Simple_repeat Simple_repeat 1 28 0 4 1700 212 255 0 0 chr5 146237977 146238028 -6299231 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 4 1700 438 274 18 73 chr5 146238099 146238264 -6298995 - RMER30 DNA MER1_type -29 173 18 4 1700 659 310 30 15 chr5 146239655 146239855 -6297404 - B3 SINE B2 -3 213 11 4 1700 462 365 11 0 chr5 146240016 146240205 -6297054 - ID_B1 SINE B4 -33 191 1 4 1700 207 208 19 19 chr5 146240793 146240847 -6296412 + GA-rich Low_complexity Low_complexity 1 54 0 4 1700 258 297 183 35 chr5 146240978 146241093 -6296166 + RSINE1 SINE B4 21 152 -13 4 1700 366 23 0 0 chr5 146241095 146241138 -6296121 + (CA)n Simple_repeat Simple_repeat 2 44 0 4 1700 398 332 78 34 chr5 146241236 146241504 -6295755 - B4A SINE B4 -10 282 3 4 1700 252 122 0 0 chr5 146241632 146241673 -6295586 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1700 224 278 0 0 chr5 146241711 146241765 -6295494 - B3A SINE B2 -87 111 58 4 1700 342 276 11 87 chr5 146241762 146241909 -6295350 + MTE2a LTR MaLR 235 374 -5 4 1700 485 211 21 0 chr5 146242039 146242134 -6295125 + PB1D9 SINE Alu 22 118 -2 4 1700 39373 8 0 1 chr5 146242149 146247943 -6289316 + L1Md_A LINE L1 1 5586 -297 4 1700 9239 1 0 0 chr5 146247943 146248939 -6288320 + L1Md_A LINE L1 5587 6582 0 4 1700 486 256 72 118 chr5 146249027 146249222 -6288037 - B3A SINE B2 -7 188 3 4 1700 467 237 92 98 chr5 146249258 146249431 -6287828 - B3A SINE B2 -25 173 2 4 1700 191 344 20 20 chr5 146249438 146249536 -6287723 + MIRm SINE MIR 179 276 0 4 1700 250 314 0 88 chr5 146249552 146249688 -6287571 + PB1 SINE Alu 1 124 -3 4 1700 213 273 61 0 chr5 146250235 146250301 -6286958 + MIRm SINE MIR 207 276 0 4 1700 894 265 19 5 chr5 146250357 146250573 -6286686 + ID_B1 SINE B4 3 221 -3 4 1700 495 168 0 5 chr5 146250607 146250795 -6286464 + GA-rich Low_complexity Low_complexity 1 187 0 4 1700 1099 107 11 0 chr5 146250821 146250999 -6286260 + (GAA)n Simple_repeat Simple_repeat 1 180 0 4 1700 1064 127 136 5 chr5 146252200 146252398 -6284861 - URR1A DNA MER1_type 0 226 3 4 1700 277 254 16 0 chr5 146252904 146252967 -6284292 - PB1D7 SINE Alu -1 119 56 4 1700 250 224 52 0 chr5 146253198 146253256 -6284003 + B3 SINE B2 1 61 -155 4 1700 410 284 0 0 chr5 146253857 146253959 -6283300 + Lx8 LINE L1 7105 7206 -267 4 1700 2500 141 40 67 chr5 146253962 146254457 -6282802 + RLTR45 LTR ERVK 1 482 0 4 1700 3736 113 26 23 chr5 146254457 146255026 -6282233 + RLTR45-int LTR ERVK 1 571 -6673 4 1700 1053 40 0 0 chr5 146255817 146255941 -6281318 + RLTR45-int LTR ERVK 569 692 -6552 4 1700 1008 163 62 0 chr5 146256041 146256250 -6281009 + RLTR45 LTR ERVK 261 482 0 4 1700 548 301 83 23 chr5 146256265 146256483 -6280776 + Lx8 LINE L1 7240 7470 -3 4 1700 573 255 65 58 chr5 146256588 146256974 -6280285 - RLTR11A2 LTR ERVK -28 413 1 4 1700 342 0 0 0 chr5 146257422 146257460 -6279799 + (A)n Simple_repeat Simple_repeat 1 38 0 4 1700 3202 135 96 15 chr5 146257479 146258156 -6279103 - RMER17A LTR ERVK -19 732 1 4 1700 192 158 0 0 chr5 146258326 146258364 -6278895 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 4 1700 577 322 63 33 chr5 146259472 146259771 -6277488 - RodERV21-int LTR ERV1 -4677 314 7 4 1700 3504 30 2 128 chr5 146259804 146260303 -6276956 - RLTR10C LTR ERVK 0 436 1 4 1700 7258 51 0 53 chr5 146260303 146261247 -6276012 - MMERVK10C-int LTR ERVK 0 7581 6688 4 1700 306 0 0 0 chr5 146261247 146261281 -6275978 + (T)n Simple_repeat Simple_repeat 1 34 0 4 1700 330 68 0 0 chr5 146261281 146261325 -6275934 - MMERVK10C-int LTR ERVK -887 6694 6651 4 1700 42531 41 0 1 chr5 146261316 146266262 -6270997 - MMERVK10C-int LTR ERVK -1771 5810 870 4 1700 2586 108 53 3 chr5 146266260 146266640 -6270619 - MMERVK10C-int LTR ERVK -7182 399 1 4 1700 3456 32 4 127 chr5 146266640 146267137 -6270122 - RLTR10C LTR ERVK 0 436 1 4 1700 39424 4 0 0 chr5 146267485 146272867 -6264392 + L1Md_A LINE L1 204 5586 -297 4 1700 9239 1 0 0 chr5 146272867 146273863 -6263396 + L1Md_A LINE L1 5587 6582 0 4 1700 1247 206 114 81 chr5 146274076 146274461 -6262798 + RMER10B LTR ERVL 1 398 0 4 1700 1390 233 51 41 chr5 146274496 146274846 -6262413 + RMER10B LTR ERVL 1 355 -43 4 1700 585 0 0 0 chr5 146274846 146274911 -6262348 + (CA)n Simple_repeat Simple_repeat 1 65 0 4 1700 1390 233 51 41 chr5 146274911 146274954 -6262305 + RMER10B LTR ERVL 356 398 0 4 1700 295 328 0 51 chr5 146274954 146275092 -6262167 + B3A SINE B2 67 197 -1 4 1700 237 65 0 0 chr5 146275634 146275665 -6261594 + (CA)n Simple_repeat Simple_repeat 2 32 0 4 1700 351 0 0 0 chr5 146275665 146275703 -6261556 + (GA)n Simple_repeat Simple_repeat 2 40 0 4 1700 180 125 0 0 chr5 146275779 146275811 -6261448 + (TG)n Simple_repeat Simple_repeat 1 32 0 4 1700 206 128 26 0 chr5 146276001 146276040 -6261219 + (TG)n Simple_repeat Simple_repeat 2 41 0 4 1700 192 135 0 0 chr5 146276150 146276187 -6261072 + (TATG)n Simple_repeat Simple_repeat 2 38 0 4 1700 429 377 0 78 chr5 146276188 146276210 -6261049 - RSINE1 SINE B4 0 165 151 4 212 4124 148 44 25 chr5 146276210 146277004 -6260255 + RMER17D2 LTR ERVK 1 809 0 4 1701 429 377 0 78 chr5 146277004 146277148 -6260111 - RSINE1 SINE B4 -15 150 12 4 1701 240 35 0 0 chr5 146277614 146277643 -6259616 + (TG)n Simple_repeat Simple_repeat 2 30 0 4 1701 35084 75 6 4 chr5 146277668 146284048 -6253211 - L1Md_F2 LINE L1 0 6582 193 4 1701 844 312 34 0 chr5 146284056 146284290 -6252969 - B4A SINE B4 -48 244 3 4 1701 618 251 102 46 chr5 146284317 146284513 -6252746 + B3 SINE B2 1 207 -9 5 1701 390 94 0 0 chr5 146284844 146284908 -6252351 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 5 1701 22 80 0 0 chr5 146284913 146284963 -6252296 + AT_rich Low_complexity Low_complexity 1 50 0 5 1701 416 118 53 0 chr5 146285287 146285363 -6251896 - Lx5 LINE L1 -1188 5862 5783 5 1701 22837 94 3 5 chr5 146285358 146289212 -6248047 - L1Md_F2 LINE L1 -2 6580 2732 5 1701 8261 48 2 2 chr5 146289218 146290273 -6246986 - L1Md_F2 LINE L1 0 6582 5528 5 1701 11197 94 10 0 chr5 146290271 146291115 -6246144 - L1Md_F2 LINE L1 -3055 2828 1983 5 1701 441 0 0 0 chr5 146291115 146291164 -6246095 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 5 1701 11197 157 57 40 chr5 146291164 146292875 -6244384 - L1Md_F2 LINE L1 -3901 1982 244 5 1701 981 154 6 6 chr5 146292875 146293032 -6244227 - L1Md_F2 LINE L1 -6260 378 222 5 1701 1022 202 32 23 chr5 146293032 146293250 -6244009 - RMER19A LTR ERVK -517 220 1 5 1701 583 340 11 0 chr5 146293798 146293983 -6243276 + ID_B1 SINE B4 9 195 -29 5 1701 205 263 235 31 chr5 146294014 146294112 -6243147 - MER5B DNA MER1_type -59 119 2 5 1701 620 361 10 5 chr5 146294131 146294340 -6242919 + B3 SINE B2 1 210 -6 5 1701 3518 33 10 0 chr5 146294380 146294772 -6242487 - MTA_Mm LTR MaLR 0 396 1 5 1701 10746 124 14 1 chr5 146294778 146296457 -6240802 + L1_Mm LINE L1 2013 3713 -2170 5 1701 5648 139 45 3 chr5 146296459 146297369 -6239890 + L1_Mus1 LINE L1 189 1136 -5480 5 1701 8444 163 100 26 chr5 146297362 146298815 -6238444 + L1_Mus1 LINE L1 2107 3703 -2180 5 1701 7494 89 17 7 chr5 146298815 146299800 -6237459 + L1Md_F2 LINE L1 5588 6582 0 5 1701 8444 163 100 26 chr5 146299800 146300289 -6236970 + L1_Mus1 LINE L1 3704 4193 -1690 5 1701 4727 10 2 0 chr5 146300289 146300781 -6236478 + MT2_Mm LTR ERVL 1 493 0 5 1701 48269 15 7 0 chr5 146300781 146306103 -6231156 + MERVL-int LTR ERVL 1 5360 -125 5 1701 387 167 46 35 chr5 146306103 146306190 -6231069 + ORR1A3-int LTR MaLR 553 640 -1323 5 1701 301 26 0 0 chr5 146306190 146306228 -6231031 + MERVL-int LTR ERVL 5448 5485 0 5 1701 4727 10 2 0 chr5 146306228 146306720 -6230539 + MT2_Mm LTR ERVL 1 493 0 5 1701 11116 104 6 6 chr5 146306721 146309092 -6228167 + L1_Mus1 LINE L1 4193 6565 -2 5 1701 550 282 16 68 chr5 146309649 146309839 -6227420 - RMER30 DNA MER1_type -11 191 12 5 1701 519 178 4 0 chr5 146310013 146310109 -6227150 - B1_Mus2 SINE Alu 0 150 51 5 1701 293 278 0 14 chr5 146310188 146310261 -6226998 + B4A SINE B4 217 288 -4 5 1701 1167 256 99 20 chr5 146310426 146310821 -6226438 + Lx8 LINE L1 7047 7472 -1 5 1701 22 35 0 0 chr5 146310823 146310852 -6226407 + AT_rich Low_complexity Low_complexity 1 29 0 5 1701 2072 313 57 30 chr5 146310924 146311725 -6225534 + Lx7 LINE L1 6478 7300 -396 5 1701 1664 158 86 3 chr5 146311736 146312040 -6225219 - IAPEY3_LTR LTR ERVK -3 329 1 5 1701 9782 117 37 13 chr5 146312040 146313553 -6223706 - IAPEY3-int LTR ERVK 0 7680 6132 5 1701 42201 81 10 4 chr5 146313553 146319010 -6218249 - IAPEY3-int LTR ERVK -2186 5494 3 5 1701 1734 146 86 0 chr5 146319017 146319318 -6217941 - IAPEY3_LTR LTR ERVK -5 327 1 5 1701 286 104 29 29 chr5 146319327 146319396 -6217863 + (CTTTG)n Simple_repeat Simple_repeat 1 69 0 5 1701 2261 111 182 23 chr5 146320924 146321213 -6216046 + RMER17A2 LTR ERVK 11 337 -569 5 1701 477 0 0 0 chr5 146321213 146321266 -6215993 + (TC)n Simple_repeat Simple_repeat 1 53 0 5 1701 2261 111 182 23 chr5 146321266 146321410 -6215849 + RMER17A2 LTR ERVK 338 512 -394 5 1701 2242 135 29 88 chr5 146321407 146321894 -6215365 - RMER17A2 LTR ERVK -448 458 1 5 1701 745 261 60 0 chr5 146322660 146322844 -6214415 - B3 SINE B2 -12 204 10 5 1701 426 305 83 20 chr5 146322990 146323194 -6214065 - ID_B1 SINE B4 -7 217 1 5 1701 1856 305 102 31 chr5 146324022 146324849 -6212410 + Lx8 LINE L1 6589 7473 0 5 1701 208 250 0 0 chr5 146325047 146325091 -6212168 + CT-rich Low_complexity Low_complexity 3 46 0 5 1701 617 320 24 24 chr5 146325583 146325794 -6211465 - B3 SINE B2 -5 211 1 5 1701 780 350 25 0 chr5 146325818 146326101 -6211158 + B4A SINE B4 1 290 -2 5 1701 559 399 0 0 chr5 146326546 146326709 -6210550 + RSINE1 SINE B4 3 165 0 5 1701 195 186 0 0 chr5 146326719 146326762 -6210497 + (CATA)n Simple_repeat Simple_repeat 1 43 0 5 1701 180 0 0 0 chr5 146326813 146326833 -6210426 + (CTCA)n Simple_repeat Simple_repeat 4 23 0 5 1701 2907 58 9 3 chr5 146326867 146327210 -6210049 - IAPLTR4 LTR ERVK 0 345 1 5 1701 483 96 0 0 chr5 146327415 146327498 -6209761 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 5 1701 303 374 0 0 chr5 146328150 146328241 -6209018 - B3A SINE B2 -38 160 70 5 1701 345 318 59 44 chr5 146328384 146328519 -6208740 + ID_B1 SINE B4 8 144 -80 5 1701 228 287 91 50 chr5 146328894 146328918 -6208341 + PB1D10 SINE Alu 7 109 -8 5 1701 342 227 13 0 chr5 146328918 146328993 -6208266 + ID_B1 SINE B4 141 216 -8 5 1701 22 35 0 0 chr5 146329251 146329280 -6207979 + AT_rich Low_complexity Low_complexity 1 29 0 5 1701 603 308 149 15 chr5 146329317 146329518 -6207741 + B4A SINE B4 53 280 -12 5 1701 944 166 14 0 chr5 146329601 146329746 -6207513 - B1_Mur4 SINE Alu -3 147 1 5 1701 575 328 111 21 chr5 146330618 146330951 -6206308 - Lx8 LINE L1 0 7473 7111 5 1701 469 307 6 84 chr5 146331565 146331743 -6205516 + RSINE1 SINE B4 2 165 0 5 1701 243 133 22 0 chr5 146331744 146331789 -6205470 + B1_Mur4 SINE Alu 105 150 0 5 1701 561 236 77 29 chr5 146332071 146332245 -6205014 + B3 SINE B2 27 216 0 5 1701 625 241 7 21 chr5 146332293 146332437 -6204822 + B1_Mur4 SINE Alu 1 142 -8 5 1701 765 110 0 0 chr5 146332439 146332575 -6204684 + (GA)n Simple_repeat Simple_repeat 1 136 0 5 1701 418 281 122 21 chr5 146332670 146333009 -6204250 + L1MB8 LINE L1 5584 5984 -194 5 1701 585 276 126 13 chr5 146333109 146333340 -6203919 + Lx8 LINE L1 6893 7149 -324 5 1701 546 250 0 0 chr5 146333593 146333717 -6203542 + B1_Mur2 SINE Alu 26 149 0 5 1701 294 123 42 102 chr5 146334918 146334992 -6202267 + RMER17D LTR ERVK 391 468 -421 5 1701 486 33 0 0 chr5 146334992 146335052 -6202207 + (TG)n Simple_repeat Simple_repeat 1 60 0 5 1701 294 123 42 102 chr5 146335052 146335077 -6202182 + RMER17D LTR ERVK 469 483 -406 5 1701 4244 218 10 23 chr5 146335077 146335667 -6201592 + RMER13B LTR ERVK 1 582 -326 5 1701 4499 146 49 39 chr5 146335667 146336545 -6200714 + RMER17D LTR ERVK 1 887 -2 5 1701 4244 218 10 23 chr5 146336545 146336867 -6200392 + RMER13B LTR ERVK 583 901 -7 5 1701 485 342 72 14 chr5 146336888 146337110 -6200149 - B4A SINE B4 -8 284 50 5 1701 1295 262 72 24 chr5 146337199 146337634 -6199625 + RLTR20C LTR ERVK 7 444 -90 5 1701 257 138 31 0 chr5 146337644 146337709 -6199550 + (TCTG)n Simple_repeat Simple_repeat 4 70 0 5 1701 290 269 19 0 chr5 146337712 146337816 -6199443 + (TG)n Simple_repeat Simple_repeat 2 107 0 5 1701 2502 240 27 11 chr5 146337832 146337928 -6199331 + Lx5 LINE L1 6446 6545 -505 5 1701 2631 119 10 2 chr5 146337928 146338325 -6198934 + MTB LTR MaLR 1 400 0 5 1701 2502 240 27 11 chr5 146338325 146338784 -6198475 + Lx5 LINE L1 6546 7010 -40 5 1701 313 191 0 29 chr5 146338803 146338873 -6198386 - HAL1-3A_ME LINE L1 -814 2044 1977 5 1701 253 304 0 0 chr5 146338876 146338945 -6198314 + (TG)n Simple_repeat Simple_repeat 1 69 0 5 1701 614 205 0 0 chr5 146339396 146339513 -6197746 + B3A SINE B2 1 117 -81 5 1701 532 191 8 42 chr5 146339530 146339650 -6197609 + B1_Mm SINE Alu 32 147 0 5 1701 299 284 25 0 chr5 146340030 146340111 -6197148 + RSINE1 SINE B4 48 130 -35 5 1701 375 285 113 8 chr5 146340129 146340253 -6197006 + RSINE1 SINE B4 1 137 -28 5 1701 438 127 0 0 chr5 146341237 146341308 -6195951 + (TAA)n Simple_repeat Simple_repeat 1 71 0 5 1701 275 96 19 0 chr5 146341770 146341822 -6195437 + (CAA)n Simple_repeat Simple_repeat 2 54 0 5 1701 488 289 0 0 chr5 146341845 146341966 -6195293 + B3A SINE B2 27 147 -51 5 1701 452 48 16 0 chr5 146341972 146342035 -6195224 + (CA)n Simple_repeat Simple_repeat 1 64 0 5 1701 456 309 32 13 chr5 146342552 146342706 -6194553 + RSINE1 SINE B4 3 159 -6 5 1701 380 338 18 6 chr5 146342850 146343014 -6194245 + B4A SINE B4 127 292 0 5 1701 303 312 31 6 chr5 146343043 146343204 -6194055 + (CATATA)n Simple_repeat Simple_repeat 4 168 0 5 1701 401 273 115 72 chr5 146343750 146344140 -6193119 + RLTR12B LTR ERVK 48 454 -74 5 1701 325 282 136 0 chr5 146344439 146344542 -6192717 + RSINE1 SINE B4 49 165 0 5 1701 744 271 56 96 chr5 146344687 146345188 -6192071 + RLTR12B LTR ERVK 47 527 -1 5 1701 611 225 8 23 chr5 146345198 146345330 -6191929 - B3 SINE B2 -86 130 1 5 1701 283 327 0 28 chr5 146345892 146345999 -6191260 + ID_B1 SINE B4 116 219 -5 5 1701 2067 255 19 8 chr5 146346383 146346862 -6190397 + Lx5 LINE L1 6536 7019 -31 5 1701 22 35 0 0 chr5 146347361 146347390 -6189869 + AT_rich Low_complexity Low_complexity 1 29 0 5 1701 1398 264 90 6 chr5 146347397 146347877 -6189382 - Lx9 LINE L1 -50 7594 7075 5 1701 635 282 50 15 chr5 146348303 146348501 -6188758 + B3 SINE B2 1 205 -11 5 1701 273 29 0 0 chr5 146348779 146348813 -6188446 + (CAA)n Simple_repeat Simple_repeat 2 35 0 5 1701 472 322 0 53 chr5 146348928 146349059 -6188200 + RSINE1 SINE B4 10 133 -32 5 1701 585 201 14 29 chr5 146349102 146349240 -6188019 - B1_Mur2 SINE Alu -1 148 13 5 1701 3620 214 19 15 chr5 146349241 146350028 -6187231 + Lx4B LINE L1 6057 6846 -212 5 1701 6371 47 18 5 chr5 146350289 146351084 -6186175 - L1Md_F2 LINE L1 -4 6578 5774 5 1701 2627 56 0 0 chr5 146351084 146351189 -6186070 + L1_Mm LINE L1 5461 5565 -318 5 1701 1610 57 0 0 chr5 146351189 146351399 -6185860 + L1Md_F2 LINE L1 6373 6582 0 5 1701 2627 56 0 0 chr5 146351399 146351612 -6185647 + L1_Mm LINE L1 5566 5778 -105 5 1701 565 279 29 34 chr5 146351612 146351816 -6185443 - RLTR16 LTR ERVK -133 372 170 5 1701 22 35 0 0 chr5 146351816 146351845 -6185414 + AT_rich Low_complexity Low_complexity 1 29 0 5 1701 309 246 0 0 chr5 146351854 146351911 -6185348 + ID4 SINE ID 14 70 -13 5 1701 762 263 5 10 chr5 146352248 146352440 -6184819 - RLTR16 LTR ERVK -314 191 1 5 1701 290 152 0 0 chr5 146352441 146352487 -6184772 + Lx4B LINE L1 6838 6883 -175 5 1701 2957 156 47 53 chr5 146352487 146353416 -6183843 + RLTR13D1 LTR ERVK 1 846 -56 5 1701 853 161 17 45 chr5 146353416 146353592 -6183667 + Lx4B LINE L1 6878 7048 -10 5 1701 253 291 80 23 chr5 146353636 146353724 -6183535 + B3 SINE B2 68 160 -56 5 1701 360 0 0 0 chr5 146353733 146353773 -6183486 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1701 206 246 0 16 chr5 146354029 146354091 -6183168 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 6 1701 458 261 18 73 chr5 146354162 146354327 -6182932 - RMER30 DNA MER1_type -29 173 18 6 1701 624 299 30 15 chr5 146355720 146355920 -6181339 - B3 SINE B2 -3 213 11 6 1701 426 356 58 0 chr5 146356062 146356270 -6180989 - ID_B1 SINE B4 -4 220 1 6 1701 1190 309 88 26 chr5 146357079 146357908 -6179351 + Lx8 LINE L1 6594 7473 0 6 1701 2992 172 109 8 chr5 146358076 146358745 -6178514 - L1_Mur3 LINE L1 -800 5080 4344 6 1701 684 253 103 0 chr5 146359060 146359254 -6178005 + B3 SINE B2 1 214 -2 6 1701 545 244 8 0 chr5 146359264 146359383 -6177876 + B3 SINE B2 4 123 -93 6 1701 252 0 0 0 chr5 146359406 146359434 -6177825 + (CA)n Simple_repeat Simple_repeat 1 28 0 6 1701 852 10 0 0 chr5 146359434 146359530 -6177729 + (GA)n Simple_repeat Simple_repeat 2 98 0 6 1701 22 35 0 0 chr5 146359541 146359570 -6177689 + AT_rich Low_complexity Low_complexity 1 29 0 6 1701 378 328 43 0 chr5 146359580 146359696 -6177563 + RSINE1 SINE B4 8 128 -37 6 1701 230 309 37 60 chr5 146359725 146359859 -6177400 + RMER15 LTR ERVL 1 131 -444 6 1701 347 306 14 7 chr5 146359894 146360032 -6177227 + RMER15 LTR ERVL 275 413 -162 6 1701 232 191 95 0 chr5 146360066 146360129 -6177130 + GA-rich Low_complexity Low_complexity 5 73 0 6 1701 185 136 14 43 chr5 146360207 146360276 -6176983 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1701 261 310 39 70 chr5 146360359 146360579 -6176680 + RLTR25A LTR ERVK 813 1103 0 6 1701 286 250 191 21 chr5 146360579 146360673 -6176586 + RSINE1 SINE B4 21 130 -35 6 1701 378 0 0 0 chr5 146360696 146360738 -6176521 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1701 563 326 77 47 chr5 146360832 146361106 -6176153 - B4A SINE B4 -10 282 1 6 1701 486 49 0 0 chr5 146361231 146361292 -6175967 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1701 232 259 0 0 chr5 146361329 146361383 -6175876 - B3A SINE B2 -87 111 58 6 1701 303 268 29 109 chr5 146361393 146361531 -6175728 + MTE2a LTR MaLR 248 374 -5 6 1701 433 228 22 0 chr5 146361664 146361756 -6175503 + PB1D9 SINE Alu 25 118 -2 6 1701 491 254 67 113 chr5 146361838 146362033 -6175226 - B3A SINE B2 -7 191 3 6 1701 424 267 80 96 chr5 146362045 146362244 -6175015 - B3A SINE B2 0 198 3 6 1701 218 330 20 20 chr5 146362251 146362350 -6174909 + MIRm SINE MIR 178 276 0 6 1701 225 234 0 0 chr5 146362452 146362499 -6174760 + PB1 SINE Alu 78 124 -3 6 1701 770 296 14 5 chr5 146363172 146363389 -6173870 + ID_B1 SINE B4 3 221 -3 6 1701 411 179 0 0 chr5 146363406 146363575 -6173684 + GA-rich Low_complexity Low_complexity 1 169 0 6 1701 1371 62 0 0 chr5 146363575 146363753 -6173506 + (GAA)n Simple_repeat Simple_repeat 3 180 0 6 1701 1108 136 131 0 chr5 146364823 146365021 -6172238 - URR1A DNA MER1_type 0 226 3 6 1701 255 262 0 32 chr5 146365539 146365602 -6171657 - PB1D10 SINE Alu -1 116 56 6 1701 259 190 52 0 chr5 146365837 146365895 -6171364 + B3 SINE B2 1 61 -155 6 1701 371 297 10 0 chr5 146366505 146366606 -6170653 + Lx8 LINE L1 7105 7206 -267 6 1701 2244 143 145 19 chr5 146366609 146367037 -6170222 + RLTR45 LTR ERVK 1 482 0 6 1701 3300 126 31 4 chr5 146367037 146367548 -6169711 + RLTR45-int LTR ERVK 1 525 -6719 6 1701 258 297 11 32 chr5 146367769 146367863 -6169396 + B1F1 SINE Alu 7 98 -51 6 1701 303 93 0 156 chr5 146368123 146368187 -6169072 + RLTR45-int LTR ERVK 521 574 -6670 6 1701 1141 42 0 40 chr5 146368945 146369095 -6168164 + RLTR45-int LTR ERVK 549 692 -6552 6 1701 250 261 34 0 chr5 146369306 146369394 -6167865 + RLTR45-int LTR ERVK 1535 1625 -6055 6 1701 1128 58 0 0 chr5 146369438 146369576 -6167683 + RLTR45-int LTR ERVK 681 818 -6426 6 1701 450 262 54 36 chr5 146369783 146369949 -6167310 + RNERVK23-int LTR ERVK 6195 6363 -1854 6 1701 2607 53 3 3 chr5 146370314 146370634 -6166625 + RLTR45-int LTR ERVK 1329 1648 -5596 6 1701 4082 185 17 15 chr5 146370723 146371694 -6165565 + RLTR45-int LTR ERVK 6331 7761 -456 6 1701 591 290 104 34 chr5 146371715 146372100 -6165159 - BGLII_B LTR ERVK -29 412 1 6 1701 2865 179 74 16 chr5 146372569 146373261 -6163998 - RMER17A LTR ERVK -19 732 1 6 1701 262 246 0 16 chr5 146373365 146373427 -6163832 - RodERV21-int LTR ERV1 -3348 1643 1583 6 1701 618 60 0 0 chr5 146373432 146373515 -6163744 + (TCTG)n Simple_repeat Simple_repeat 2 84 0 6 1701 569 322 63 33 chr5 146374621 146374920 -6162339 - RodERV21-int LTR ERV1 -4677 314 7 6 1701 230 314 14 0 chr5 146375356 146375426 -6161833 + B3A SINE B2 93 163 -35 6 1701 1085 201 163 84 chr5 146375495 146375864 -6161395 + RMER10B LTR ERVL 1 398 0 6 1701 952 266 46 33 chr5 146375899 146376292 -6160967 + RMER10B LTR ERVL 1 398 0 6 1701 210 354 7 51 chr5 146376292 146376429 -6160830 + B3A SINE B2 67 197 -1 6 1701 210 37 0 0 chr5 146377222 146377249 -6160010 + (TG)n Simple_repeat Simple_repeat 2 28 0 6 1701 2390 98 60 0 chr5 146377249 146377584 -6159675 - RLTR10D LTR ERVK -3 356 2 6 1701 2271 217 42 18 chr5 146377585 146378182 -6159077 - IAP-d-int LTR ERVK 0 6542 5671 6 1701 5089 132 22 14 chr5 146378247 146379032 -6158227 - IAP-d-int LTR ERVK -358 6184 5394 6 1701 1890 228 3 0 chr5 146379071 146379426 -6157833 - IAP-d-int LTR ERVK -1148 5394 5039 6 1701 375 47 13 147 chr5 146379418 146379493 -6157766 - IAP-d-int LTR ERVK -6473 69 5 6 1701 818 125 111 0 chr5 146379494 146379638 -6157621 - RLTR10D LTR ERVK 0 359 200 6 1701 3636 48 2 5 chr5 146379638 146380075 -6157184 + RLTR10C LTR ERVK 1 436 0 6 1701 2221 45 0 7 chr5 146380075 146380344 -6156915 + MMERVK10C-int LTR ERVK 1 267 -7314 6 1701 202 70 0 85 chr5 146380427 146380474 -6156785 + GA-rich Low_complexity Low_complexity 3 45 0 6 1701 1618 138 62 4 chr5 146380474 146380750 -6156509 - RLTR10D LTR ERVK -67 292 1 6 1701 519 31 0 0 chr5 146380767 146380832 -6156427 + (GA)n Simple_repeat Simple_repeat 2 66 0 6 1701 241 274 95 0 chr5 146380918 146381002 -6156257 - B4 SINE B4 0 292 201 6 1701 353 123 15 0 chr5 146381119 146381184 -6156075 + (TG)n Simple_repeat Simple_repeat 2 67 0 6 1701 498 114 0 0 chr5 146381296 146381375 -6155884 + (TATG)n Simple_repeat Simple_repeat 4 82 0 6 1701 3538 160 121 11 chr5 146381384 146381715 -6155544 + RMER17D2 LTR ERVK 1 369 -440 6 1701 936 77 0 0 chr5 146381715 146381858 -6155401 + (TCTCC)n Simple_repeat Simple_repeat 2 144 0 6 1701 3538 160 121 11 chr5 146381858 146382255 -6155004 + RMER17D2 LTR ERVK 370 809 0 6 1701 477 379 0 0 chr5 146382255 146382408 -6154851 - RSINE1 SINE B4 -10 155 3 6 1701 522 0 0 0 chr5 146382812 146382870 -6154389 + (TC)n Simple_repeat Simple_repeat 2 59 0 6 1701 426 20 0 0 chr5 146382886 146382937 -6154322 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1701 706 327 39 8 chr5 146382937 146383196 -6154063 - B4A SINE B4 -23 269 3 6 1701 571 283 18 24 chr5 146383252 146383422 -6153837 + B3 SINE B2 42 210 -6 6 1701 891 319 57 20 chr5 146384325 146384750 -6152509 + Lx7 LINE L1 6880 7326 -147 6 1701 561 68 0 0 chr5 146384750 146384824 -6152435 + (TTTTG)n Simple_repeat Simple_repeat 1 74 0 6 1701 647 319 115 37 chr5 146384824 146384945 -6152314 + Lx7 LINE L1 7327 7469 -4 6 1701 192 97 0 0 chr5 146385581 146385612 -6151647 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1701 1679 146 9 40 chr5 146386397 146386813 -6150446 + RMER17A2 LTR ERVK 1 513 -393 6 1701 2205 151 8 50 chr5 146386810 146387290 -6149969 - RMER17A2 LTR ERVK -446 460 1 6 1701 24 0 0 0 chr5 146387499 146387523 -6149736 + AT_rich Low_complexity Low_complexity 1 24 0 6 1701 25 51 0 0 chr5 146387593 146387632 -6149627 + AT_rich Low_complexity Low_complexity 1 39 0 6 1701 583 310 38 0 chr5 146387947 146388131 -6149128 - B3 SINE B2 -15 201 11 6 1701 464 341 62 9 chr5 146388275 146388485 -6148774 - ID_B1 SINE B4 -3 221 1 6 1701 1864 290 110 39 chr5 146389316 146390142 -6147117 + Lx8 LINE L1 6589 7473 0 6 1701 641 290 54 20 chr5 146390860 146391064 -6146195 - B3 SINE B2 -5 211 1 6 1701 701 333 35 14 chr5 146391088 146391374 -6145885 + B4A SINE B4 1 292 0 6 1701 329 155 0 27 chr5 146391954 146392027 -6145232 + (CATA)n Simple_repeat Simple_repeat 1 71 0 6 1701 225 244 11 34 chr5 146392081 146392170 -6145089 + (CA)n Simple_repeat Simple_repeat 2 88 0 6 1701 183 167 0 0 chr5 146392218 146392260 -6144999 + (CA)n Simple_repeat Simple_repeat 1 42 0 6 1701 225 167 0 0 chr5 146392314 146392368 -6144891 + CT-rich Low_complexity Low_complexity 2 55 0 6 1701 549 0 0 0 chr5 146392370 146392431 -6144828 + (CA)n Simple_repeat Simple_repeat 1 61 0 6 1701 247 385 0 0 chr5 146393075 146393166 -6144093 - B3A SINE B2 -38 160 70 6 1701 221 257 28 28 chr5 146393303 146393375 -6143884 + ID4_ SINE ID 2 73 -10 6 1701 310 256 13 0 chr5 146393476 146393554 -6143705 + ID_B1 SINE B4 141 219 -5 6 1701 25 31 0 0 chr5 146393797 146393829 -6143430 + AT_rich Low_complexity Low_complexity 1 32 0 6 1701 908 146 21 7 chr5 146394151 146394296 -6142963 - B1_Mur4 SINE Alu -3 147 1 6 1701 651 304 115 27 chr5 146395166 146395504 -6141755 - Lx8 LINE L1 0 7473 7106 6 1701 720 143 0 0 chr5 146395676 146395830 -6141429 + (GA)n Simple_repeat Simple_repeat 1 154 0 6 1701 420 304 180 12 chr5 146395887 146396262 -6140997 + L1MB8 LINE L1 5548 5984 -194 6 1701 607 276 126 13 chr5 146396362 146396593 -6140666 + Lx8 LINE L1 6893 7149 -324 6 1701 623 222 20 20 chr5 146396824 146396971 -6140288 + B1F2 SINE Alu 3 149 0 6 1701 453 19 0 0 chr5 146398168 146398222 -6139037 + (TC)n Simple_repeat Simple_repeat 1 54 0 6 1701 237 83 0 0 chr5 146398223 146398259 -6139000 + (TG)n Simple_repeat Simple_repeat 2 37 0 6 1701 4205 225 18 12 chr5 146398278 146398854 -6138405 + RMER13B LTR ERVK 1 584 -324 6 1701 4858 131 14 64 chr5 146398854 146399790 -6137469 + RMER17D LTR ERVK 1 889 0 6 1701 4205 225 18 12 chr5 146399790 146400116 -6137143 + RMER13B LTR ERVK 585 908 0 6 1701 535 354 49 0 chr5 146400131 146400354 -6136905 - B4A SINE B4 -9 283 50 6 1701 1258 260 68 27 chr5 146400440 146400866 -6136393 + RLTR20C LTR ERVK 4 446 -114 6 1701 215 61 30 0 chr5 146400866 146400899 -6136360 + (TG)n Simple_repeat Simple_repeat 2 35 0 6 1701 221 120 40 0 chr5 146400903 146400953 -6136306 + (TCTG)n Simple_repeat Simple_repeat 4 55 0 6 1701 254 280 20 0 chr5 146400958 146401058 -6136201 + (TG)n Simple_repeat Simple_repeat 2 103 0 6 1701 2630 239 27 10 chr5 146401074 146401170 -6136089 + Lx5 LINE L1 6446 6545 -505 6 1701 2668 114 10 2 chr5 146401170 146401567 -6135692 + MTB LTR MaLR 1 400 0 6 1701 2630 239 27 10 chr5 146401567 146402062 -6135197 + Lx5 LINE L1 6546 7047 -3 6 1701 432 172 0 0 chr5 146402067 146402154 -6135105 + (TG)n Simple_repeat Simple_repeat 2 88 0 7 1701 576 264 0 8 chr5 146402624 146402754 -6134505 + B3A SINE B2 1 129 -69 7 1701 556 165 8 42 chr5 146402758 146402878 -6134381 + B1_Mm SINE Alu 32 147 0 7 1701 316 268 24 0 chr5 146403257 146403339 -6133920 + RSINE1 SINE B4 47 130 -35 7 1701 348 303 115 0 chr5 146403359 146403481 -6133778 + RSINE1 SINE B4 2 137 -28 7 1701 288 53 0 0 chr5 146404456 146404494 -6132765 + (TAA)n Simple_repeat Simple_repeat 1 38 0 7 1701 194 116 23 0 chr5 146404948 146404991 -6132268 + (CAA)n Simple_repeat Simple_repeat 2 45 0 7 1701 490 283 0 0 chr5 146405015 146405135 -6132124 + B3A SINE B2 28 147 -51 7 1701 300 91 0 0 chr5 146405141 146405185 -6132074 + (CA)n Simple_repeat Simple_repeat 1 44 0 7 1701 456 309 32 13 chr5 146405697 146405851 -6131408 + RSINE1 SINE B4 3 159 -6 7 1701 465 307 18 6 chr5 146405995 146406159 -6131100 + B4A SINE B4 127 292 0 7 1701 288 370 6 17 chr5 146406169 146406345 -6130914 + (CA)n Simple_repeat Simple_repeat 1 174 0 7 1701 381 293 48 57 chr5 146406900 146407110 -6130149 + RLTR12B LTR ERVK 48 255 -273 7 1701 261 57 0 0 chr5 146407278 146407313 -6129946 + (TA)n Simple_repeat Simple_repeat 1 35 0 7 1702 449 325 25 0 chr5 146407547 146407667 -6129592 + RSINE1 SINE B4 2 124 -41 7 1702 498 119 0 0 chr5 146407667 146407751 -6129508 + (CA)n Simple_repeat Simple_repeat 2 85 0 7 1702 726 293 54 97 chr5 146407865 146408368 -6128891 + RLTR12B LTR ERVK 47 527 -1 7 1702 553 240 8 23 chr5 146408378 146408510 -6128749 - B3 SINE B2 -86 130 1 7 1702 273 330 0 28 chr5 146409068 146409174 -6128085 + ID_B1 SINE B4 117 219 -5 7 1702 2186 242 19 8 chr5 146409558 146410037 -6127222 + Lx5 LINE L1 6536 7019 -31 7 1702 22 35 0 0 chr5 146410535 146410564 -6126695 + AT_rich Low_complexity Low_complexity 1 29 0 7 1702 1395 264 97 21 chr5 146410571 146411054 -6126205 - Lx9 LINE L1 -50 7594 7075 7 1702 764 272 15 19 chr5 146411487 146411693 -6125566 + B3 SINE B2 1 205 -11 7 1702 26 0 0 0 chr5 146411780 146411806 -6125453 + AT_rich Low_complexity Low_complexity 1 26 0 7 1702 500 349 26 7 chr5 146412109 146412262 -6124997 + RSINE1 SINE B4 10 165 0 7 1702 601 186 8 37 chr5 146412278 146412412 -6124847 - B1_Mur3 SINE Alu -6 143 14 7 1702 1703 212 11 14 chr5 146412414 146412778 -6124481 + Lx4B LINE L1 6057 6419 -639 7 1702 2919 96 14 19 chr5 146412778 146413191 -6124068 + RLTR1B-int LTR ERV1 1671 2081 -1218 7 1702 2283 60 7 0 chr5 146413170 146413451 -6123808 + RLTR45-int LTR ERVK 6962 7244 0 7 1702 2557 148 32 68 chr5 146413451 146413951 -6123308 + RLTR45 LTR ERVK 1 482 0 7 1702 4615 84 34 24 chr5 146413954 146414192 -6123067 + RLTR45-int LTR ERVK 18 278 -6966 7 1702 180 0 0 0 chr5 146414192 146414212 -6123047 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7 1702 4615 84 34 24 chr5 146414212 146414641 -6122618 + RLTR45-int LTR ERVK 279 691 -6553 7 1702 1780 60 5 0 chr5 146414996 146415213 -6122046 + RLTR45-int LTR ERVK 692 909 -6335 7 1702 758 101 0 8 chr5 146415333 146415453 -6121806 + RLTR45-int LTR ERVK 913 1031 -6213 7 1702 291 278 22 22 chr5 146415748 146415840 -6121419 + MMTV-int LTR ERVK 2413 2504 -4749 7 1702 2664 59 0 0 chr5 146416204 146416524 -6120735 + RLTR45-int LTR ERVK 1329 1648 -5596 7 1702 7494 150 19 10 chr5 146416613 146418003 -6119256 + RLTR45-int LTR ERVK 6331 7761 -456 7 1702 2121 139 42 171 chr5 146418003 146418557 -6118702 + RLTR45 LTR ERVK 1 482 0 7 1702 1717 229 25 20 chr5 146418557 146418963 -6118296 + Lx4B LINE L1 6439 6846 -212 7 1702 688 264 56 50 chr5 146419088 146419411 -6117848 - RLTR16 LTR ERVK -12 493 169 7 1702 260 298 0 0 chr5 146419446 146419503 -6117756 + ID4 SINE ID 14 70 -13 7 1702 822 253 5 10 chr5 146419841 146420033 -6117226 - RLTR16 LTR ERVK -314 191 1 7 1702 2982 129 70 21 chr5 146420072 146421121 -6116138 + RLTR13D1 LTR ERVK 1 978 0 7 1702 760 196 22 44 chr5 146421121 146421302 -6115957 + Lx4B LINE L1 6878 7054 -4 7 1702 227 297 95 0 chr5 146421347 146421421 -6115838 + B3 SINE B2 68 148 -68 7 1702 612 70 0 0 chr5 146421424 146421510 -6115749 + (CA)n Simple_repeat Simple_repeat 1 86 0 7 1702 3147 147 93 23 chr5 146421920 146422609 -6114650 - RMER17A LTR ERVK -14 737 1 7 1702 537 16 0 0 chr5 146422779 146422841 -6114418 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 7 1702 4359 157 49 45 chr5 146472978 146474030 -6063229 - L1Md_F LINE L1 -5462 1262 208 7 1702 1044 169 31 0 chr5 146474045 146474240 -6063019 - RMER19A LTR ERVK -536 201 1 7 1702 579 323 11 0 chr5 146474898 146475084 -6062175 + ID_B1 SINE B4 8 195 -29 7 1702 555 365 10 5 chr5 146475232 146475441 -6061818 + B3 SINE B2 1 210 -6 7 1702 3196 53 8 0 chr5 146475481 146475874 -6061385 - MTA_Mm LTR MaLR 0 396 1 7 1702 10766 119 16 1 chr5 146475880 146477555 -6059704 + L1_Mus1 LINE L1 2013 3713 -2170 7 1702 5572 143 36 9 chr5 146477557 146478480 -6058779 + L1Md_F2 LINE L1 189 1136 -5480 7 1702 25294 89 6 0 chr5 146478473 146481934 -6055325 + L1Md_F2 LINE L1 2107 5585 -298 7 1702 7138 93 14 2 chr5 146481935 146482919 -6054340 + L1Md_F2 LINE L1 5587 6582 0 7 1702 14077 117 8 3 chr5 146482919 146485764 -6051495 + L1_Mus1 LINE L1 3703 6565 -2 7 1702 1129 200 98 37 chr5 146486294 146486590 -6050669 + RLTR46 LTR ERVK 1 314 -6 7 1702 519 236 30 110 chr5 146486600 146486800 -6050459 + IAPEY3-int LTR ERVK 3 186 -7494 7 1702 651 249 46 0 chr5 146486796 146487013 -6050246 + IAPEY3-int LTR ERVK 535 761 -6919 7 1702 304 110 51 71 chr5 146487019 146487117 -6050142 + GA-rich Low_complexity Low_complexity 3 98 0 7 1702 539 101 0 63 chr5 146487128 146487223 -6050036 + IAPEz-int LTR ERVK 85 173 -6369 7 1702 753 213 29 6 chr5 146487220 146487390 -6049869 + IAPEz-int LTR ERVK 347 520 -6022 7 1702 1283 147 112 0 chr5 146487372 146487596 -6049663 + IAPEz-int LTR ERVK 5007 5255 -1287 7 1702 1749 163 73 6 chr5 146487593 146487921 -6049338 + IAPEY3-int LTR ERVK 6989 7338 -342 7 1702 1359 201 59 12 chr5 146487944 146488281 -6048978 + IAPEz-int LTR ERVK 6129 6481 0 7 1702 1192 192 94 34 chr5 146488281 146488578 -6048681 + RLTR46 LTR ERVK 1 315 -5 7 1702 494 288 16 58 chr5 146488616 146488804 -6048455 - RMER30 DNA MER1_type -11 191 12 7 1702 428 150 7 0 chr5 146488958 146489034 -6048225 - B1_Mus2 SINE Alu -20 129 50 7 1702 278 250 0 14 chr5 146489113 146489186 -6048073 + B4A SINE B4 217 288 -4 7 1702 974 247 117 43 chr5 146489352 146489745 -6047514 + Lx8 LINE L1 7051 7472 -1 7 1702 22 35 0 0 chr5 146489747 146489776 -6047483 + AT_rich Low_complexity Low_complexity 1 29 0 7 1702 1971 316 56 31 chr5 146489848 146490651 -6046608 + Lx7 LINE L1 6478 7300 -396 7 1702 1624 148 87 0 chr5 146490668 146490966 -6046293 - IAPEY3_LTR LTR ERVK -8 324 1 7 1702 9201 89 30 15 chr5 146490966 146492259 -6045000 - IAPEY3-int LTR ERVK 0 7680 6368 7 1702 35114 84 6 1 chr5 146492281 146498777 -6038482 - L1Md_F2 LINE L1 -13 6569 98 7 1702 6002 187 20 8 chr5 146498840 146500000 -6037259 - IAPEY3-int LTR ERVK -1394 6286 5113 7 1702 39090 86 6 4 chr5 146500000 146505099 -6032160 - IAPEY3-int LTR ERVK -2568 5112 3 1 1702 1621 149 86 0 chr5 146505106 146505407 -6031852 - IAPEY3_LTR LTR ERVK -5 327 1 1 1702 242 87 70 28 chr5 146505416 146505487 -6031772 + (CTTTG)n Simple_repeat Simple_repeat 1 74 0 2 1702 2094 111 182 23 chr5 146507015 146507304 -6029955 + RMER17A2 LTR ERVK 11 337 -569 3 1702 477 0 0 0 chr5 146507304 146507357 -6029902 + (TC)n Simple_repeat Simple_repeat 1 53 0 4 1702 2094 111 182 23 chr5 146507357 146507501 -6029758 + RMER17A2 LTR ERVK 338 512 -394 3 1702 2053 122 28 99 chr5 146507498 146507991 -6029268 - RMER17A2 LTR ERVK -448 458 1 5 1702 703 255 60 0 chr5 146508757 146508941 -6028318 - B3 SINE B2 -12 204 10 6 1702 427 340 72 10 chr5 146509083 146509291 -6027968 - ID_B1 SINE B4 -3 221 1 7 1702 1869 306 102 6 chr5 146510119 146510789 -6026470 + Lx8 LINE L1 6589 7322 -151 8 1702 208 250 0 0 chr5 146511143 146511187 -6026072 + CT-rich Low_complexity Low_complexity 3 46 0 9 1702 537 303 33 28 chr5 146511676 146511890 -6025369 - B3 SINE B2 -1 215 1 1 1702 720 343 25 0 chr5 146511914 146512197 -6025062 + B4A SINE B4 1 290 -2 1 1702 498 399 0 0 chr5 146512642 146512805 -6024454 + RSINE1 SINE B4 3 165 0 1 1702 195 186 0 0 chr5 146512815 146512858 -6024401 + (CATA)n Simple_repeat Simple_repeat 1 43 0 1 1702 180 0 0 0 chr5 146512909 146512929 -6024330 + (CTCA)n Simple_repeat Simple_repeat 4 23 0 1 1702 2757 58 9 3 chr5 146512963 146513306 -6023953 - IAPLTR4 LTR ERVK 0 345 1 1 1702 627 112 0 0 chr5 146513500 146513616 -6023643 + (TC)n Simple_repeat Simple_repeat 2 117 0 1 1702 189 0 0 0 chr5 146513616 146513637 -6023622 + (CA)n Simple_repeat Simple_repeat 1 21 0 1 1702 271 374 0 0 chr5 146514278 146514369 -6022890 - B3A SINE B2 -38 160 70 1 1702 299 325 53 45 chr5 146514512 146514644 -6022615 + ID_B1 SINE B4 8 140 -84 1 1702 317 227 13 0 chr5 146515046 146515121 -6022138 + ID_B1 SINE B4 141 216 -8 1 1702 535 308 149 15 chr5 146515445 146515646 -6021613 + B4A SINE B4 53 280 -12 2 1702 864 169 13 7 chr5 146515724 146515873 -6021386 - B1_Mur4 SINE Alu 0 150 1 2 1702 304 309 9 9 chr5 146516967 146517078 -6020181 - Lx8 LINE L1 -252 7221 7111 2 1702 453 315 7 46 chr5 146517690 146517843 -6019416 + RSINE1 SINE B4 2 148 -17 2 1702 230 133 22 0 chr5 146517875 146517920 -6019339 + B1_Mur4 SINE Alu 105 150 0 2 1702 503 237 135 0 chr5 146518220 146518376 -6018883 + B3 SINE B2 40 216 0 2 1702 565 241 7 21 chr5 146518424 146518568 -6018691 + B1_Mur4 SINE Alu 1 142 -8 2 1702 675 119 0 0 chr5 146518570 146518696 -6018563 + (GA)n Simple_repeat Simple_repeat 1 126 0 2 1702 408 299 203 21 chr5 146518791 146519130 -6018129 + L1MB8 LINE L1 5584 5984 -194 2 1702 631 268 126 13 chr5 146519230 146519461 -6017798 + Lx8 LINE L1 6893 7149 -324 2 1702 546 250 0 0 chr5 146519714 146519838 -6017421 + B1_Mur2 SINE Alu 26 149 0 3 1702 284 125 43 103 chr5 146521039 146521111 -6016148 + RMER17D LTR ERVK 393 468 -421 3 1702 522 31 0 0 chr5 146521111 146521175 -6016084 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1702 284 125 43 103 chr5 146521175 146521200 -6016059 + RMER17D LTR ERVK 469 483 -406 3 1702 4248 221 10 23 chr5 146521200 146521790 -6015469 + RMER13B LTR ERVK 1 584 -324 3 1702 4539 137 55 48 chr5 146521790 146522671 -6014588 + RMER17D LTR ERVK 1 887 -2 3 1702 4248 221 10 23 chr5 146522671 146522993 -6014266 + RMER13B LTR ERVK 585 901 -7 3 1702 506 338 72 14 chr5 146523014 146523236 -6014023 - B4A SINE B4 -8 284 50 3 1702 1236 273 70 35 chr5 146523325 146523748 -6013511 + RLTR20C LTR ERVK 7 432 -102 3 1702 254 29 29 0 chr5 146523748 146523783 -6013476 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1702 1236 273 68 35 chr5 146523783 146523810 -6013449 + RLTR20C LTR ERVK 433 455 -79 3 1702 331 275 15 8 chr5 146523812 146523944 -6013315 + (TG)n Simple_repeat Simple_repeat 2 134 0 3 1702 2459 238 27 13 chr5 146523960 146524056 -6013203 + Lx5 LINE L1 6446 6545 -505 3 1702 2606 121 10 2 chr5 146524056 146524453 -6012806 + MTB LTR MaLR 1 400 0 4 1702 2459 238 27 13 chr5 146524453 146524913 -6012346 + Lx5 LINE L1 6546 7010 -40 3 1702 348 200 0 0 chr5 146524966 146525051 -6012208 + (TG)n Simple_repeat Simple_repeat 2 86 0 4 1702 605 214 0 0 chr5 146525521 146525638 -6011621 + B3A SINE B2 1 117 -81 4 1702 538 183 8 42 chr5 146525655 146525775 -6011484 + B1_Mm SINE Alu 32 147 0 4 1702 299 284 25 0 chr5 146526155 146526236 -6011023 + RSINE1 SINE B4 48 130 -35 4 1702 366 293 113 8 chr5 146526254 146526378 -6010881 + RSINE1 SINE B4 1 137 -28 4 1702 477 138 0 0 chr5 146527362 146527442 -6009817 + (TAA)n Simple_repeat Simple_repeat 1 80 0 4 1702 215 93 23 0 chr5 146527904 146527947 -6009312 + (CAA)n Simple_repeat Simple_repeat 2 45 0 4 1702 479 292 0 0 chr5 146527971 146528091 -6009168 + B3A SINE B2 28 147 -51 4 1702 444 67 0 0 chr5 146528097 146528157 -6009102 + (CA)n Simple_repeat Simple_repeat 1 60 0 4 1702 507 278 45 38 chr5 146528669 146528826 -6008433 + RSINE1 SINE B4 3 160 -5 5 1702 315 346 31 6 chr5 146528967 146529127 -6008132 + B4A SINE B4 127 290 -2 5 1702 287 319 31 6 chr5 146529160 146529321 -6007938 + (CATATA)n Simple_repeat Simple_repeat 4 168 0 5 1702 378 283 48 57 chr5 146529867 146530077 -6007182 + RLTR12B LTR ERVK 48 255 -273 5 1702 225 324 40 0 chr5 146530397 146530471 -6006788 + ID4 SINE ID 5 81 -2 5 1702 323 304 88 0 chr5 146530556 146530658 -6006601 + RSINE1 SINE B4 49 159 -6 5 1702 763 269 56 96 chr5 146530804 146531305 -6005954 + RLTR12B LTR ERVK 47 527 -1 5 1702 619 217 8 23 chr5 146531315 146531447 -6005812 - B3 SINE B2 -86 130 1 5 1702 283 327 0 28 chr5 146532005 146532112 -6005147 + ID_B1 SINE B4 116 219 -5 5 1702 2083 253 19 8 chr5 146532496 146532975 -6004284 + Lx5 LINE L1 6536 7019 -31 5 1702 29 0 0 0 chr5 146533473 146533502 -6003757 + AT_rich Low_complexity Low_complexity 1 29 0 6 1702 1436 262 90 6 chr5 146533509 146533989 -6003270 - Lx9 LINE L1 -50 7594 7075 6 1702 644 281 50 15 chr5 146534415 146534614 -6002645 + B3 SINE B2 1 206 -10 6 1702 273 29 0 0 chr5 146534891 146534925 -6002334 + (CAA)n Simple_repeat Simple_repeat 2 35 0 6 1702 472 322 0 53 chr5 146535039 146535170 -6002089 + RSINE1 SINE B4 10 133 -32 6 1702 585 201 14 29 chr5 146535213 146535351 -6001908 - B1_Mur2 SINE Alu -1 148 13 6 1702 3624 213 19 15 chr5 146535352 146536139 -6001120 + Lx4B LINE L1 6057 6846 -212 6 1702 6461 40 17 15 chr5 146536400 146537203 -6000056 - L1Md_F2 LINE L1 -4 6578 5774 6 1702 2395 64 15 34 chr5 146537203 146537309 -5999950 + L1_Mm LINE L1 5461 5565 -318 6 1702 1642 52 0 0 chr5 146537309 146537519 -5999740 + L1Md_F2 LINE L1 6373 6582 0 6 1702 2395 64 15 34 chr5 146537519 146537737 -5999522 + L1_Mm LINE L1 5566 5779 -104 6 1702 594 270 30 30 chr5 146537737 146537939 -5999320 - RLTR16 LTR ERVK -133 372 171 7 1702 25 31 0 0 chr5 146537939 146537971 -5999288 + AT_rich Low_complexity Low_complexity 1 32 0 7 1702 309 246 0 0 chr5 146537980 146538037 -5999222 + ID4 SINE ID 14 70 -13 7 212 762 263 5 10 chr5 146538374 146538566 -5998693 - RLTR16 LTR ERVK -314 191 1 7 1703 318 130 0 0 chr5 146538567 146538613 -5998646 + Lx4B LINE L1 6838 6883 -175 7 1703 3038 163 70 20 chr5 146538613 146539543 -5997716 + RLTR13D1 LTR ERVK 1 965 -58 7 1703 817 171 22 45 chr5 146539543 146539721 -5997538 + Lx4B LINE L1 6878 7051 -7 6 1703 258 271 92 23 chr5 146539762 146539849 -5997410 + B3 SINE B2 68 160 -56 7 1703 486 33 0 0 chr5 146539858 146539918 -5997341 + (CA)n Simple_repeat Simple_repeat 1 60 0 7 1703 239 263 105 0 chr5 146540173 146540268 -5996991 - Lx9 LINE L1 -140 7504 7400 7 1703 470 261 18 73 chr5 146540289 146540454 -5996805 - RMER30 DNA MER1_type -29 173 18 7 1703 40 67 0 0 chr5 146541394 146541469 -5995790 + AT_rich Low_complexity Low_complexity 1 75 0 7 1703 21321 94 29 16 chr5 146541470 146545629 -5991630 - L1Md_F3 LINE L1 -14 6573 363 8 1703 616 340 15 0 chr5 146546058 146546258 -5991001 - B3 SINE B2 -3 213 11 8 1703 546 335 53 0 chr5 146546403 146546612 -5990647 - ID_B1 SINE B4 -4 220 1 8 1703 1199 308 88 29 chr5 146547420 146548251 -5989008 + Lx8 LINE L1 6594 7473 0 8 1703 3165 159 112 8 chr5 146548420 146549087 -5988172 - L1_Mur3 LINE L1 -800 5080 4344 8 1703 668 286 90 0 chr5 146549402 146549591 -5987668 + B3 SINE B2 1 206 -10 8 1703 633 217 0 0 chr5 146549610 146549730 -5987529 + B3 SINE B2 4 123 -93 8 1703 447 19 0 0 chr5 146549753 146549805 -5987454 + (CA)n Simple_repeat Simple_repeat 1 52 0 8 1703 26 30 0 0 chr5 146549820 146549853 -5987406 + AT_rich Low_complexity Low_complexity 1 33 0 8 1703 483 333 66 7 chr5 146549860 146550011 -5987248 + RSINE1 SINE B4 5 164 -1 8 1703 351 306 14 7 chr5 146550180 146550318 -5986941 + RMER15 LTR ERVL 275 413 -162 9 1703 440 35 0 17 chr5 146550368 146550427 -5986832 + (GGGAGA)n Simple_repeat Simple_repeat 4 61 0 9 1703 224 30 0 29 chr5 146550539 146550573 -5986686 + (TG)n Simple_repeat Simple_repeat 1 33 0 9 1703 207 208 19 19 chr5 146550704 146550758 -5986501 + GA-rich Low_complexity Low_complexity 1 54 0 9 1703 316 291 148 41 chr5 146550889 146551011 -5986248 + RSINE1 SINE B4 21 155 -10 9 1703 339 25 0 0 chr5 146551012 146551052 -5986207 + (CA)n Simple_repeat Simple_repeat 2 41 0 9 1703 601 322 77 47 chr5 146551146 146551420 -5985839 - B4A SINE B4 -10 282 1 9 1703 573 115 0 0 chr5 146551545 146551632 -5985627 + (CA)n Simple_repeat Simple_repeat 1 87 0 9 1703 215 278 0 0 chr5 146551669 146551723 -5985536 - B3A SINE B2 -87 111 58 9 1703 344 294 27 87 chr5 146551720 146551869 -5985390 + MTE2a LTR MaLR 235 374 -5 9 1703 432 242 21 0 chr5 146551999 146552094 -5985165 + PB1D9 SINE Alu 22 118 -2 1 1703 461 269 56 103 chr5 146552176 146552371 -5984888 - B3A SINE B2 -7 191 3 1 1703 425 261 86 98 chr5 146552408 146552582 -5984677 - B3A SINE B2 -25 173 2 1 1703 210 320 20 20 chr5 146552588 146552687 -5984572 + L2a LINE L2 3326 3424 -2 1 1703 234 300 30 98 chr5 146552703 146552836 -5984423 + PB1 SINE Alu 1 124 -3 1 1703 831 284 9 5 chr5 146553510 146553726 -5983533 + ID_B1 SINE B4 3 219 -5 1 1703 258 211 0 0 chr5 146553742 146553784 -5983475 + polypurine Low_complexity Low_complexity 2 43 0 1 1703 216 86 0 0 chr5 146553784 146553819 -5983440 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1 1703 258 211 0 0 chr5 146553819 146553847 -5983412 + polypurine Low_complexity Low_complexity 44 71 0 1 1703 615 139 0 0 chr5 146553843 146553944 -5983315 + (GGA)n Simple_repeat Simple_repeat 2 102 0 1 1703 1263 94 0 0 chr5 146553944 146554124 -5983135 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1 1703 1101 136 131 0 chr5 146555194 146555392 -5981867 - URR1A DNA MER1_type 0 226 3 1 1703 286 238 16 0 chr5 146555918 146555981 -5981278 - PB1D7 SINE Alu -1 119 56 1 1703 259 190 52 0 chr5 146556217 146556275 -5980984 + B3 SINE B2 1 61 -155 1 1703 400 294 0 0 chr5 146556878 146556980 -5980279 + Lx8 LINE L1 7105 7206 -267 1 1703 2279 141 145 19 chr5 146556983 146557411 -5979848 + RLTR45 LTR ERVK 1 482 0 1 1703 3459 114 29 4 chr5 146557411 146557923 -5979336 + RLTR45-int LTR ERVK 1 525 -6719 1 1703 258 297 11 32 chr5 146558144 146558238 -5979021 + B1F1 SINE Alu 7 98 -51 1 1703 282 127 0 167 chr5 146558500 146558566 -5978693 + RLTR45-int LTR ERVK 521 575 -6669 1 1703 1133 42 0 40 chr5 146559321 146559471 -5977788 + RLTR45-int LTR ERVK 549 692 -6552 1 1703 1122 58 0 0 chr5 146559814 146559952 -5977307 + RLTR45-int LTR ERVK 681 818 -6426 1 1703 478 250 54 36 chr5 146560159 146560325 -5976934 + RNERVK23-int LTR ERVK 6195 6363 -1854 1 1703 2443 72 6 3 chr5 146560688 146561007 -5976252 + RLTR45-int LTR ERVK 1329 1648 -5596 1 1703 7515 148 11 12 chr5 146561096 146562499 -5974760 + RLTR45-int LTR ERVK 6331 7761 -456 1 1703 2087 161 142 16 chr5 146562499 146562927 -5974332 + RLTR45 LTR ERVK 1 482 0 1 1703 512 302 88 23 chr5 146562942 146563159 -5974100 + Lx8 LINE L1 7240 7470 -3 1 1703 5377 113 2 56 chr5 146563242 146564747 -5972512 + L1Md_F2 LINE L1 307 1727 -4156 1 1703 7151 53 1 1 chr5 146564746 146565617 -5971642 + L1Md_F2 LINE L1 4716 5586 -297 1 1703 8057 60 1 0 chr5 146565617 146566612 -5970647 + L1Md_F2 LINE L1 5587 6582 0 1 1703 486 267 60 28 chr5 146566646 146566862 -5970397 - BGLII_B LTR ERVK -28 413 191 1 1703 486 275 71 51 chr5 146566854 146566904 -5970355 - RLTR11A2 LTR ERVK -269 258 209 1 1703 1140 67 12 6 chr5 146566904 146567069 -5970190 - L1Md_F3 LINE L1 -1 6583 6418 1 1703 486 275 71 51 chr5 146567069 146567271 -5969988 - RLTR11A2 LTR ERVK -319 208 2 1 1703 2584 159 76 11 chr5 146567729 146568405 -5968854 - RMER17A LTR ERVK -22 787 1 1 1703 277 269 0 15 chr5 146568503 146568571 -5968688 - RodERV21-int LTR ERV1 -3342 1649 1583 1 1703 510 70 0 0 chr5 146568576 146568647 -5968612 + (TCTG)n Simple_repeat Simple_repeat 2 72 0 1 1703 533 325 63 33 chr5 146569753 146570052 -5967207 - RodERV21-int LTR ERV1 -4677 314 7 1 1703 253 361 10 0 chr5 146570462 146570559 -5966700 + B3A SINE B2 66 163 -35 1 1703 1052 207 163 84 chr5 146570628 146570997 -5966262 + RMER10B LTR ERVL 1 398 0 1 1703 961 266 49 31 chr5 146571032 146571423 -5965836 + RMER10B LTR ERVL 1 398 0 1 1703 217 354 7 51 chr5 146571423 146571560 -5965699 + B3A SINE B2 67 197 -1 1 1703 438 36 0 0 chr5 146572349 146572405 -5964854 + (TG)n Simple_repeat Simple_repeat 2 57 0 1 1703 2408 107 53 0 chr5 146572405 146572742 -5964517 - RLTR10D LTR ERVK -3 356 2 1 1703 2278 136 49 0 chr5 146572743 146573089 -5964170 - IAP-d-int LTR ERVK 0 6542 6180 1 1703 6883 196 19 45 chr5 146573057 146574590 -5962669 - IAP-d-int LTR ERVK -727 6953 5039 1 1703 467 29 13 128 chr5 146574582 146574660 -5962599 - IAP-d-int LTR ERVK -6473 69 1 1 1703 2279 134 50 0 chr5 146574660 146575002 -5962257 - RLTR10D LTR ERVK 0 359 1 1 1703 425 50 17 0 chr5 146575018 146575078 -5962181 + (CA)n Simple_repeat Simple_repeat 2 62 0 1 1703 180 125 0 0 chr5 146575173 146575205 -5962054 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1703 350 134 15 0 chr5 146575385 146575452 -5961807 + (TG)n Simple_repeat Simple_repeat 2 69 0 1 1703 688 73 36 0 chr5 146575561 146575671 -5961588 + (TATG)n Simple_repeat Simple_repeat 1 114 0 1 1703 4087 152 49 14 chr5 146575675 146576457 -5960802 + RMER17D2 LTR ERVK 1 809 0 1 1703 258 56 0 0 chr5 146577027 146577063 -5960196 + (TC)n Simple_repeat Simple_repeat 2 37 0 1 1703 408 20 0 0 chr5 146577070 146577119 -5960140 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1703 627 338 34 0 chr5 146577144 146577378 -5959881 - B4A SINE B4 -48 244 3 1 1703 552 275 85 30 chr5 146577405 146577604 -5959655 + B3 SINE B2 1 210 -6 1 1703 967 314 45 24 chr5 146578534 146578940 -5958319 + Lx7 LINE L1 6901 7326 -147 1 1703 474 101 0 0 chr5 146578940 146579009 -5958250 + (CTTTG)n Simple_repeat Simple_repeat 1 69 0 1 1703 591 329 97 39 chr5 146579009 146579130 -5958129 + Lx7 LINE L1 7327 7469 -4 1 1703 33283 83 1 17 chr5 146579233 146584553 -5952706 + L1Md_F2 LINE L1 355 5586 -297 1 1703 8248 50 0 0 chr5 146584553 146585537 -5951722 + L1Md_F2 LINE L1 5587 6570 -12 1 1703 192 97 0 0 chr5 146586083 146586114 -5951145 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1 1703 24 0 0 0 chr5 146586344 146586368 -5950891 + AT_rich Low_complexity Low_complexity 1 24 0 1 1703 1575 184 21 32 chr5 146586907 146587208 -5950051 + RMER17A2 LTR ERVK 1 295 -611 1 1703 545 0 15 0 chr5 146587208 146587273 -5949986 + (TC)n Simple_repeat Simple_repeat 1 66 0 1 1703 1575 95 31 1 chr5 146587273 146587372 -5949887 + RMER17A2 LTR ERVK 296 372 -534 1 1703 2105 139 2 100 chr5 146587362 146587880 -5949379 - RMER17A2 LTR ERVK -439 467 1 1 1703 25 0 0 0 chr5 146588089 146588114 -5949145 + AT_rich Low_complexity Low_complexity 1 25 0 1 1703 22 56 0 0 chr5 146588183 146588219 -5949040 + AT_rich Low_complexity Low_complexity 1 36 0 1 1703 637 299 38 0 chr5 146588536 146588720 -5948539 - B3 SINE B2 -15 201 11 1 1703 461 349 57 5 chr5 146588864 146589074 -5948185 - ID_B1 SINE B4 -3 221 1 1 1703 994 294 104 35 chr5 146589904 146590732 -5946527 + Lx8 LINE L1 6589 7473 0 1 1703 201 204 0 22 chr5 146590939 146590984 -5946275 + CT-rich Low_complexity Low_complexity 3 46 0 1 1703 37549 31 7 8 chr5 146591475 146597274 -5939985 + L1Md_A LINE L1 1 5586 -297 1 1703 8332 44 1 0 chr5 146597275 146598266 -5938993 + L1Md_A LINE L1 5588 6579 -3 1 1703 24 0 0 0 chr5 146598266 146598290 -5938969 + AT_rich Low_complexity Low_complexity 1 24 0 1 1703 741 285 19 19 chr5 146598304 146598515 -5938744 - B3 SINE B2 -5 211 1 1 1703 715 317 42 18 chr5 146598539 146598822 -5938437 + B4A SINE B4 1 290 -2 1 1703 449 368 15 0 chr5 146599264 146599400 -5937859 + RSINE1 SINE B4 12 149 -16 1 1703 207 186 0 0 chr5 146599426 146599469 -5937790 + (CATA)n Simple_repeat Simple_repeat 1 43 0 1 1703 226 295 11 44 chr5 146599522 146599703 -5937556 + (CA)n Simple_repeat Simple_repeat 2 176 0 1 1703 219 103 0 0 chr5 146599760 146599799 -5937460 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 1 1703 411 38 0 0 chr5 146599815 146599868 -5937391 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1703 282 318 77 31 chr5 146600734 146600864 -5936395 + ID_B1 SINE B4 2 137 -87 1 1703 283 267 13 0 chr5 146600907 146600982 -5936277 + ID_B1 SINE B4 141 216 -8 1 1703 21 36 0 0 chr5 146601232 146601260 -5935999 + AT_rich Low_complexity Low_complexity 1 28 0 1 1703 911 146 21 7 chr5 146601583 146601728 -5935531 - B1_Mur4 SINE Alu -3 147 1 1 1703 625 311 114 24 chr5 146602607 146602940 -5934319 - Lx8 LINE L1 0 7473 7111 1 1703 413 333 12 53 chr5 146603555 146603726 -5933533 + RSINE1 SINE B4 2 165 0 1 1703 515 244 150 0 chr5 146604067 146604227 -5933032 + B3 SINE B2 33 216 0 1 1703 397 238 169 16 chr5 146604277 146604401 -5932858 + B1_Mur4 SINE Alu 1 143 -7 1 1703 555 175 0 0 chr5 146604403 146604557 -5932702 + GA-rich Low_complexity Low_complexity 1 154 0 1 1703 267 306 223 44 chr5 146604651 146604991 -5932268 + L1MB8 LINE L1 5584 5984 -194 1 1703 710 221 70 5 chr5 146605091 146605278 -5931981 + Lx8 LINE L1 6893 7091 -382 1 1703 649 222 20 20 chr5 146605554 146605701 -5931558 + B1F2 SINE Alu 3 149 0 1 1703 504 0 0 0 chr5 146606896 146606952 -5930307 + (TC)n Simple_repeat Simple_repeat 2 57 0 1 1703 189 0 0 0 chr5 146606952 146606972 -5930287 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1703 4221 221 26 19 chr5 146606972 146607582 -5929677 + RMER13B LTR ERVK 1 584 -324 1 1703 4888 147 19 40 chr5 146607582 146608488 -5928771 + RMER17D LTR ERVK 1 887 -2 1 1703 4221 217 20 16 chr5 146608488 146608816 -5928443 + RMER13B LTR ERVK 585 908 0 1 1703 547 347 63 14 chr5 146608831 146609053 -5928206 - B4A SINE B4 -9 283 51 1 1703 1213 229 61 26 chr5 146609140 146609566 -5927693 + RLTR20C LTR ERVK 4 432 -102 1 1703 258 95 0 0 chr5 146609566 146609608 -5927651 + (TG)n Simple_repeat Simple_repeat 2 43 0 1 1703 491 283 0 14 chr5 146609608 146609625 -5927634 + RLTR20C LTR ERVK 447 463 -88 1 1703 185 183 17 0 chr5 146609701 146609761 -5927498 + (TG)n Simple_repeat Simple_repeat 2 62 0 1 1703 2477 239 17 30 chr5 146609777 146609873 -5927386 + Lx5 LINE L1 6446 6545 -505 1 1703 2812 99 5 5 chr5 146609873 146610269 -5926990 + MTA_Mm LTR MaLR 1 396 0 1 1703 2477 239 17 30 chr5 146610269 146610767 -5926492 + Lx5 LINE L1 6546 7032 -18 1 1703 498 96 0 0 chr5 146610773 146610846 -5926413 + (TG)n Simple_repeat Simple_repeat 2 74 0 1 1703 642 240 0 8 chr5 146611329 146611459 -5925800 + B3A SINE B2 1 129 -69 1 1703 535 191 8 17 chr5 146611463 146611580 -5925679 + B1_Mm SINE Alu 32 147 0 1 1703 316 268 24 0 chr5 146611964 146612046 -5925213 + RSINE1 SINE B4 47 130 -35 1 1703 401 287 115 0 chr5 146612066 146612188 -5925071 + RSINE1 SINE B4 2 137 -28 1 1703 389 129 14 0 chr5 146613167 146613237 -5924022 + (TAA)n Simple_repeat Simple_repeat 1 71 0 1 1703 230 282 12 82 chr5 146613614 146613699 -5923560 + ID4 SINE ID 3 81 -2 1 1703 467 306 0 0 chr5 146613758 146613882 -5923377 + B3A SINE B2 28 151 -47 1 1703 237 65 0 0 chr5 146613888 146613919 -5923340 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1703 483 296 32 13 chr5 146614404 146614558 -5922701 + RSINE1 SINE B4 3 159 -6 1 1703 476 307 18 6 chr5 146614706 146614870 -5922389 + B4A SINE B4 127 292 0 1 1703 313 314 6 39 chr5 146614878 146615060 -5922199 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 1 1703 341 303 48 57 chr5 146615611 146615821 -5921438 + RLTR12B LTR ERVK 48 255 -273 1 1703 424 314 24 55 chr5 146616254 146616419 -5920840 + RSINE1 SINE B4 2 161 -4 1 1703 672 289 37 91 chr5 146616615 146617045 -5920214 + RLTR12B LTR ERVK 121 527 -1 1 1703 627 209 8 23 chr5 146617055 146617187 -5920072 - B3 SINE B2 -86 130 1 2 1703 305 317 0 28 chr5 146617743 146617850 -5919409 + ID_B1 SINE B4 116 219 -5 2 1703 1828 272 19 19 chr5 146618230 146618714 -5918545 + Lx5 LINE L1 6536 7019 -31 2 1703 29 0 0 0 chr5 146619213 146619242 -5918017 + AT_rich Low_complexity Low_complexity 1 29 0 2 1703 1360 262 105 17 chr5 146619249 146619727 -5917532 - Lx9 LINE L1 -50 7594 7075 2 1703 708 287 15 19 chr5 146620150 146620356 -5916903 + B3 SINE B2 1 205 -11 2 1703 23 0 0 0 chr5 146620441 146620464 -5916795 + AT_rich Low_complexity Low_complexity 1 23 0 2 1703 498 349 26 7 chr5 146620767 146620920 -5916339 + RSINE1 SINE B4 10 165 0 2 1703 621 178 15 37 chr5 146620936 146621070 -5916189 - B1_Mur4 SINE Alu -2 148 18 2 1703 1742 206 11 14 chr5 146621073 146621437 -5915822 + Lx4B LINE L1 6057 6419 -639 2 1703 2973 89 15 17 chr5 146621437 146621849 -5915410 + RLTR1B-int LTR ERV1 1671 2081 -1218 2 1703 2336 60 3 0 chr5 146621826 146622110 -5915149 + RLTR45-int LTR ERVK 6960 7244 0 2 1703 2551 142 34 66 chr5 146622110 146622608 -5914651 + RLTR45 LTR ERVK 1 482 0 2 1703 4579 91 35 19 chr5 146622611 146622849 -5914410 + RLTR45-int LTR ERVK 18 278 -6966 2 1703 180 0 0 0 chr5 146622849 146622869 -5914390 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2 1703 4579 91 35 19 chr5 146622869 146623295 -5913964 + RLTR45-int LTR ERVK 279 691 -6553 2 1703 1823 59 0 0 chr5 146623650 146623869 -5913390 + RLTR45-int LTR ERVK 692 910 -6334 2 1703 745 77 17 25 chr5 146623990 146624110 -5913149 + RLTR45-int LTR ERVK 913 1031 -6213 2 1703 323 238 27 27 chr5 146624402 146624536 -5912723 + MMTV-int LTR ERVK 2388 2504 -4749 2 1703 2686 56 0 0 chr5 146624856 146625176 -5912083 + RLTR45-int LTR ERVK 1329 1648 -5596 2 1703 7494 150 19 10 chr5 146625265 146626655 -5910604 + RLTR45-int LTR ERVK 6331 7761 -456 2 1703 2154 139 42 170 chr5 146626655 146627208 -5910051 + RLTR45 LTR ERVK 1 482 0 2 1703 1717 229 25 20 chr5 146627208 146627614 -5909645 + Lx4B LINE L1 6439 6846 -212 2 1703 688 264 56 50 chr5 146627739 146628062 -5909197 - RLTR16 LTR ERVK -12 493 169 2 1703 260 298 0 0 chr5 146628097 146628154 -5909105 + ID4 SINE ID 14 70 -13 2 1703 822 253 5 10 chr5 146628492 146628684 -5908575 - RLTR16 LTR ERVK -314 191 1 2 1703 2982 129 70 21 chr5 146628723 146629772 -5907487 + RLTR13D1 LTR ERVK 1 978 0 2 1703 760 196 22 44 chr5 146629772 146629953 -5907306 + Lx4B LINE L1 6878 7054 -4 2 1703 227 297 95 0 chr5 146629998 146630072 -5907187 + B3 SINE B2 68 148 -68 2 1703 612 70 0 0 chr5 146630075 146630161 -5907098 + (CA)n Simple_repeat Simple_repeat 1 86 0 2 1703 3147 147 93 23 chr5 146630570 146631259 -5906000 - RMER17A LTR ERVK -14 737 1 2 1703 537 16 0 0 chr5 146631429 146631491 -5905768 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2 1703 2708 59 3 0 chr5 146631584 146631925 -5905334 - L1Md_F2 LINE L1 -4 6578 6237 2 1703 252 267 0 109 chr5 146631929 146632030 -5905229 - RodERV21-int LTR ERV1 -3954 1037 948 2 1703 358 286 149 0 chr5 146632649 146632810 -5904449 - RodERV21-int LTR ERV1 -4188 803 619 2 1703 473 339 63 33 chr5 146632958 146633257 -5904002 - RodERV21-int LTR ERV1 -4677 314 7 2 1703 230 324 14 0 chr5 146633693 146633764 -5903495 + B3A SINE B2 92 163 -35 2 1703 814 191 256 112 chr5 146633833 146634181 -5903078 + RMER10B LTR ERVL 1 398 0 2 1703 1347 228 30 45 chr5 146634216 146634620 -5902639 + RMER10B LTR ERVL 1 398 0 2 1703 286 328 0 51 chr5 146634620 146634758 -5902501 + B3A SINE B2 67 197 -1 2 1703 2423 111 50 0 chr5 146635430 146635772 -5901487 - RLTR10D LTR ERVK 0 359 1 2 1703 2538 147 26 16 chr5 146635772 146636232 -5901027 - IAP-d-int LTR ERVK 0 6542 5812 2 1703 414 100 0 0 chr5 146636247 146636307 -5900952 - RLTR10D LTR ERVK -299 60 1 2 1703 477 0 0 0 chr5 146636335 146636388 -5900871 + (GA)n Simple_repeat Simple_repeat 2 54 0 2 1703 312 314 118 111 chr5 146636478 146636674 -5900585 - B4 SINE B4 -4 288 97 2 1703 596 93 10 0 chr5 146636674 146636771 -5900488 + (TG)n Simple_repeat Simple_repeat 2 99 0 2 1703 312 314 118 111 chr5 146636771 146636853 -5900406 - B4 SINE B4 -196 96 8 2 1703 407 88 29 0 chr5 146636881 146636949 -5900310 + (TATG)n Simple_repeat Simple_repeat 1 70 0 2 1703 4316 147 50 13 chr5 146636953 146637733 -5899526 + RMER17D2 LTR ERVK 1 809 0 2 1703 522 0 0 0 chr5 146638300 146638358 -5898901 + (TC)n Simple_repeat Simple_repeat 2 59 0 2 1703 290 264 0 0 chr5 146638361 146638433 -5898826 + (TG)n Simple_repeat Simple_repeat 1 72 0 2 1703 808 326 26 0 chr5 146638437 146638707 -5898552 - B4A SINE B4 0 292 16 2 1703 534 285 85 30 chr5 146638746 146638945 -5898314 + B3 SINE B2 1 210 -6 2 1703 228 225 0 0 chr5 146639542 146639582 -5897677 - RMER13A LTR ERVK -214 646 607 2 1703 198 143 0 0 chr5 146639622 146639657 -5897602 + (TG)n Simple_repeat Simple_repeat 1 35 0 2 1703 2423 274 80 34 chr5 146639766 146640608 -5896651 - Lx8 LINE L1 0 7473 6594 2 1703 32324 117 17 10 chr5 146640730 146646315 -5890944 - L1Md_F LINE L1 -49 5834 208 2 1703 1056 159 31 0 chr5 146646330 146646525 -5890734 - RMER19A LTR ERVK -536 201 1 2 1703 524 342 10 0 chr5 146647193 146647386 -5889873 + ID_B1 SINE B4 1 195 -29 2 1703 619 329 14 14 chr5 146647534 146647744 -5889515 + B3 SINE B2 1 210 -6 2 1703 3322 46 5 0 chr5 146647784 146648178 -5889081 - MTA_Mm LTR MaLR 0 396 1 2 1703 8675 116 18 1 chr5 146648184 146649517 -5887742 + L1_Mm LINE L1 2013 3367 -2516 2 1703 265 56 0 0 chr5 146649517 146649553 -5887706 + RLTR10B LTR ERVK 1 36 -256 2 1703 1974 39 0 115 chr5 146649553 146649874 -5887385 + RLTR10B LTR ERVK 9 292 0 2 1703 1501 45 0 0 chr5 146649874 146650052 -5887207 + MMERVK10C-int LTR ERVK 1 178 -7403 2 1703 264 121 14 57 chr5 146650137 146650207 -5887052 + GA-rich Low_complexity Low_complexity 3 69 0 2 1703 2471 35 117 0 chr5 146650207 146650540 -5886719 + MMERVK10C-int LTR ERVK 553 911 -1076 2 1703 399 314 32 32 chr5 146650540 146650760 -5886499 + MMERVK10C-int LTR ERVK 1347 1566 -6015 2 1703 2842 100 8 3 chr5 146650744 146651174 -5886085 + MMERVK10C-int LTR ERVK 5001 5810 -1771 2 1703 7462 67 0 26 chr5 146651165 146652121 -5885138 + MMERVK10C-int LTR ERVK 6651 7581 0 2 1703 315 48 0 0 chr5 146652121 146652163 -5885096 + RLTR10B LTR ERVK 1 42 -250 2 1703 1992 39 0 121 chr5 146652185 146652508 -5884751 + RLTR10B LTR ERVK 9 292 0 2 1703 2199 126 9 0 chr5 146652508 146652857 -5884402 + L1_Mus1 LINE L1 3362 3713 -2170 2 1703 5692 137 37 3 chr5 146652859 146653776 -5883483 + L1Md_F2 LINE L1 189 1136 -5480 2 1703 24537 96 8 1 chr5 146653769 146657225 -5880034 + L1Md_F2 LINE L1 2107 5586 -297 2 1703 7036 96 19 2 chr5 146657225 146658204 -5879055 + L1Md_F2 LINE L1 5587 6582 0 2 1703 14401 116 4 3 chr5 146658204 146661061 -5876198 + L1_Mus1 LINE L1 3704 6565 -2 2 1703 1126 206 94 34 chr5 146661591 146661888 -5875371 + RLTR46 LTR ERVK 1 315 -5 2 1703 433 261 32 87 chr5 146661897 146662092 -5875167 + IAPEY3-int LTR ERVK 3 171 -7342 2 1703 651 242 47 0 chr5 146662095 146662310 -5874949 + IAPEY3-int LTR ERVK 537 761 -6919 2 1703 348 57 42 84 chr5 146662316 146662411 -5874848 + GA-rich Low_complexity Low_complexity 3 93 0 2 1703 520 133 212 10 chr5 146662418 146662517 -5874742 + IAP-d-int LTR ERVK 55 173 -6369 2 1703 767 203 26 0 chr5 146662514 146662667 -5874592 + IAP-d-int LTR ERVK 347 503 -6039 2 1703 1310 138 112 0 chr5 146662667 146662891 -5874368 + IAP-d-int LTR ERVK 5007 5255 -1287 2 1703 1694 148 78 21 chr5 146662888 146663219 -5874040 + IAPEY3-int LTR ERVK 6989 7338 -342 2 1703 1242 186 94 21 chr5 146663242 146663571 -5873688 + IAP-d-int LTR ERVK 6129 6481 0 2 1703 1123 210 95 34 chr5 146663571 146663867 -5873392 + RLTR46 LTR ERVK 1 314 -6 2 1703 484 282 16 68 chr5 146663909 146664099 -5873160 - RMER30 DNA MER1_type -11 191 12 2 1703 516 146 5 0 chr5 146664273 146664364 -5872895 - B1_Mus2 SINE Alu -5 144 50 2 1703 305 250 0 14 chr5 146664443 146664516 -5872743 + B4A SINE B4 217 288 -4 2 1703 1032 271 98 23 chr5 146664680 146665076 -5872183 + Lx8 LINE L1 7047 7472 -1 2 1703 23 33 0 0 chr5 146665078 146665108 -5872151 + AT_rich Low_complexity Low_complexity 1 30 0 2 1703 2066 324 56 19 chr5 146665180 146665988 -5871271 + Lx7 LINE L1 6478 7325 -148 2 1703 189 0 0 0 chr5 146665988 146666009 -5871250 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 2 1703 285 29 0 0 chr5 146666018 146666052 -5871207 + (CTTTG)n Simple_repeat Simple_repeat 1 34 0 2 1703 1430 344 76 16 chr5 146666052 146666173 -5871086 + Lx7 LINE L1 7334 7472 -1 2 1703 1872 179 21 49 chr5 146667580 146667887 -5869372 + RMER17A2 LTR ERVK 2 291 -615 2 1703 534 31 0 0 chr5 146667887 146667951 -5869308 + (TC)n Simple_repeat Simple_repeat 1 64 0 2 1703 1872 130 51 14 chr5 146667951 146668096 -5869163 + RMER17A2 LTR ERVK 292 513 -393 2 1703 2376 114 18 84 chr5 146668095 146668585 -5868674 - RMER17A2 LTR ERVK -448 458 1 2 1703 32 26 0 0 chr5 146668892 146668931 -5868328 + AT_rich Low_complexity Low_complexity 1 39 0 2 1703 728 285 43 0 chr5 146669344 146669530 -5867729 - B3 SINE B2 -13 203 10 2 1704 430 340 121 10 chr5 146669672 146669871 -5867388 - ID_B1 SINE B4 -3 221 1 2 1704 1024 298 101 29 chr5 146670711 146671532 -5865727 + Lx8 LINE L1 6594 7473 0 2 1704 827 284 19 19 chr5 146672262 146672477 -5864782 - B3 SINE B2 -1 215 1 2 1704 805 308 50 25 chr5 146672501 146672784 -5864475 + B4A SINE B4 1 290 -2 2 1704 207 232 0 0 chr5 146673366 146673422 -5863837 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 2 1704 200 184 0 0 chr5 146673608 146673646 -5863613 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1704 534 193 0 0 chr5 146673648 146673814 -5863445 + CT-rich Low_complexity Low_complexity 2 167 0 2 1704 369 0 0 0 chr5 146673814 146673855 -5863404 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 1704 212 407 0 0 chr5 146674497 146674588 -5862671 - B3A SINE B2 -38 160 70 2 1704 320 343 70 54 chr5 146674720 146674905 -5862354 + ID_B1 SINE B4 2 189 -35 2 1704 253 313 71 0 chr5 146675234 146675258 -5862001 + PB1D9 SINE Alu 7 112 -8 2 1704 344 240 13 0 chr5 146675258 146675333 -5861926 + ID_B1 SINE B4 141 216 -8 2 1704 23 33 0 0 chr5 146675591 146675621 -5861638 + AT_rich Low_complexity Low_complexity 1 30 0 2 1704 551 299 236 9 chr5 146675631 146675860 -5861399 + B4A SINE B4 1 281 -11 2 1704 976 157 20 7 chr5 146675937 146676085 -5861174 - B1_Mur4 SINE Alu 0 150 1 2 1704 634 312 111 27 chr5 146676875 146677208 -5860051 - Lx8 LINE L1 0 7473 7113 2 1704 554 307 6 74 chr5 146677825 146678001 -5859258 + RSINE1 SINE B4 2 165 0 2 1704 243 105 26 0 chr5 146678004 146678042 -5859217 + B1_Mur4 SINE Alu 105 143 -7 2 1704 546 230 46 46 chr5 146678353 146678526 -5858733 + B3 SINE B2 44 216 0 2 1704 630 241 8 8 chr5 146678553 146678687 -5858572 + B1_Mur4 SINE Alu 1 134 -16 2 1704 381 95 0 0 chr5 146678699 146678762 -5858497 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 2 1704 372 266 132 41 chr5 146678866 146679203 -5858056 + L1MB8 LINE L1 5586 5984 -190 2 1704 600 264 128 14 chr5 146679316 146679535 -5857724 + Lx8 LINE L1 6906 7149 -324 2 1704 638 247 7 7 chr5 146679766 146679913 -5857346 + B1F2 SINE Alu 3 149 0 2 1704 405 0 0 0 chr5 146681120 146681165 -5856094 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1704 342 0 0 0 chr5 146681165 146681202 -5856057 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 1704 4829 203 12 23 chr5 146681225 146681814 -5855445 + RMER13B LTR ERVK 1 584 -324 2 1704 5560 125 26 10 chr5 146681814 146682687 -5854572 + RMER17D LTR ERVK 1 887 -2 2 1704 4829 203 12 23 chr5 146682687 146683015 -5854244 + RMER13B LTR ERVK 585 908 0 2 1704 551 320 120 19 chr5 146683029 146683287 -5853972 - B4A SINE B4 -8 284 1 2 1704 1500 232 64 27 chr5 146683339 146683779 -5853480 + RLTR20C LTR ERVK 4 446 -88 2 1704 314 178 0 11 chr5 146683779 146683870 -5853389 + (TG)n Simple_repeat Simple_repeat 2 91 0 2 1704 212 172 17 0 chr5 146683910 146683968 -5853291 + (TG)n Simple_repeat Simple_repeat 2 60 0 2 1704 2777 235 15 10 chr5 146683984 146684080 -5853179 + Lx5 LINE L1 6446 6547 -503 3 1704 2793 119 2 5 chr5 146684080 146684477 -5852782 + MTA_Mm LTR MaLR 1 396 0 3 1704 2777 235 15 10 chr5 146684477 146684982 -5852277 + Lx5 LINE L1 6548 7050 0 3 1704 716 240 0 8 chr5 146685439 146685569 -5851690 + B3A SINE B2 1 129 -69 3 1704 535 226 8 17 chr5 146685573 146685690 -5851569 + B1_Mus2 SINE Alu 32 147 0 3 1704 219 241 56 0 chr5 146685741 146685795 -5851464 + ID2 SINE ID 8 64 -19 3 1704 515 271 115 0 chr5 146686166 146686288 -5850971 + RSINE1 SINE B4 2 137 -28 3 1704 371 193 40 73 chr5 146686625 146686776 -5850483 + Lx4B LINE L1 6913 7058 0 3 1704 663 299 8 2 chr5 146687789 146687985 -5849274 + B3A SINE B2 2 198 0 3 1704 689 274 13 13 chr5 146688481 146688640 -5848619 + RSINE1 SINE B4 3 161 -4 3 1704 593 306 32 16 chr5 146688701 146688944 -5848315 + B4A SINE B4 41 292 0 3 1704 487 295 96 72 chr5 146689576 146689992 -5847267 + RLTR12B LTR ERVK 47 472 -56 3 1704 231 333 27 0 chr5 146690124 146690199 -5847060 + ID4 SINE ID 5 81 -2 3 1704 452 308 43 0 chr5 146690238 146690355 -5846904 + RSINE1 SINE B4 3 124 -41 3 1704 501 47 0 0 chr5 146690356 146690420 -5846839 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 1704 1149 281 36 72 chr5 146690533 146691032 -5846227 + RLTR12B LTR ERVK 47 527 -1 3 1704 693 211 22 22 chr5 146691035 146691171 -5846088 - B3A SINE B2 -59 139 4 3 1704 275 297 19 29 chr5 146691726 146691830 -5845429 + ID_B1 SINE B4 116 218 -6 3 1704 257 326 154 26 chr5 146691917 146692144 -5845115 + Lx8 LINE L1 7209 7464 -9 3 1704 495 0 0 0 chr5 146692159 146692214 -5845045 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1704 2281 227 21 2 chr5 146692238 146692711 -5844548 + Lx5 LINE L1 6538 7019 -31 3 1704 340 212 70 77 chr5 146693168 146693311 -5843948 - Lx9 LINE L1 0 7644 7503 3 1704 430 293 73 16 chr5 146693312 146693503 -5843756 - Lx9 LINE L1 -367 7277 7076 3 1704 840 289 0 10 chr5 146693815 146694021 -5843238 + B3 SINE B2 2 205 -11 3 1704 26 0 0 0 chr5 146694108 146694134 -5843125 + AT_rich Low_complexity Low_complexity 1 26 0 3 1704 758 215 7 0 chr5 146694629 146694764 -5842495 - B1_Mur3 SINE Alu 0 149 14 3 1704 3883 209 17 14 chr5 146694774 146695556 -5841703 + Lx4B LINE L1 6062 6845 -213 3 1704 4721 39 2 37 chr5 146695567 146696133 -5841126 - L1Md_F2 LINE L1 0 6582 6037 3 1704 791 253 48 19 chr5 146696255 146696525 -5840734 - RLTR16 LTR ERVK -12 493 216 3 1704 24 0 0 0 chr5 146696860 146696884 -5840375 + AT_rich Low_complexity Low_complexity 1 24 0 3 1704 22 56 0 0 chr5 146697105 146697141 -5840118 + AT_rich Low_complexity Low_complexity 1 36 0 3 1704 34785 92 15 17 chr5 146697252 146699855 -5837404 + L1Md_A LINE L1 174 2767 -3116 3 1704 3667 33 0 0 chr5 146699855 146700251 -5837008 + MTA_Mm LTR MaLR 1 396 0 3 1704 9627 37 9 0 chr5 146700251 146701339 -5835920 + MTA_Mm-int LTR MaLR 1 1098 0 3 1704 3675 30 0 0 chr5 146701339 146701735 -5835524 + MTA_Mm LTR MaLR 1 396 0 3 1704 34785 50 6 3 chr5 146701735 146704542 -5832717 + L1Md_A LINE L1 2768 5612 -2270 3 1704 8760 35 4 1 chr5 146704542 146705522 -5831737 + L1Md_F3 LINE L1 5587 6569 -15 3 1704 882 294 30 37 chr5 146705522 146705590 -5831669 + L1Md_A LINE L1 5613 5680 -2202 3 1704 9161 108 66 4 chr5 146705743 146707667 -5829592 - L1VL2 LINE L1 -2599 3284 949 3 1704 207 0 0 0 chr5 146707667 146707690 -5829569 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3 1704 5898 122 38 3 chr5 146707690 146708205 -5829054 - L1VL2 LINE L1 -5686 948 417 3 1704 864 274 92 57 chr5 146708478 146708660 -5828599 - B4 SINE B4 0 292 102 3 1704 2264 153 113 5 chr5 146708660 146709040 -5828219 + MTC LTR MaLR 1 421 0 3 1704 864 274 92 57 chr5 146709040 146709139 -5828120 - B4 SINE B4 -191 101 1 3 1704 275 287 22 54 chr5 146709318 146709410 -5827849 + MTE2b LTR MaLR 197 285 -94 3 1704 396 55 0 0 chr5 146709465 146709520 -5827739 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3 1704 5843 159 1 2 chr5 146710211 146711175 -5826084 - L1_Mm LINE L1 -511 5372 4410 3 1704 424 89 0 25 chr5 146711360 146711441 -5825818 + (TG)n Simple_repeat Simple_repeat 1 79 0 3 1704 474 18 0 0 chr5 146711549 146711604 -5825655 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 3 1704 410 261 29 69 chr5 146711703 146711876 -5825383 + MTE2b LTR MaLR 205 370 -9 3 1704 751 294 10 10 chr5 146712290 146712489 -5824770 + B3 SINE B2 1 199 -17 3 1704 905 182 14 0 chr5 146712496 146712639 -5824620 - B1_Mur4 SINE Alu -5 145 1 3 1704 25 0 0 0 chr5 146712639 146712664 -5824595 + AT_rich Low_complexity Low_complexity 1 25 0 3 1704 765 270 10 174 chr5 146712948 146713455 -5823804 + L1_Mur3 LINE L1 2708 3131 -2749 3 1704 452 321 0 0 chr5 146713604 146713710 -5823549 + B1_Mur1 SINE Alu 39 144 -5 3 1704 575 340 105 49 chr5 146714045 146714539 -5822720 + MTE-int LTR MaLR 754 1275 -305 3 1704 856 158 51 29 chr5 146714591 146714728 -5822531 - B1_Mus1 SINE Alu -7 141 2 3 1704 446 300 74 84 chr5 146714766 146714807 -5822452 + MTE-int LTR MaLR 1247 1284 -296 3 1704 816 203 7 0 chr5 146714807 146714945 -5822314 - B1_Mus1 SINE Alu -6 142 4 3 1704 446 300 74 84 chr5 146714945 146715212 -5822047 + MTE-int LTR MaLR 1285 1552 -28 3 1704 1310 298 76 48 chr5 146715298 146715823 -5821436 + Lx8 LINE L1 6932 7471 -2 3 1704 23 0 0 0 chr5 146715833 146715856 -5821403 + AT_rich Low_complexity Low_complexity 1 23 0 3 1704 1536 298 62 23 chr5 146715932 146716030 -5821229 - Lx9 LINE L1 -27 7617 7513 3 1704 276 30 0 0 chr5 146716030 146716063 -5821196 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1704 1536 298 62 23 chr5 146716063 146716610 -5820649 - Lx9 LINE L1 -132 7512 6948 3 1704 618 289 0 31 chr5 146717086 146717247 -5820012 + RSINE1 SINE B4 4 159 -6 3 1704 22 35 0 0 chr5 146717271 146717300 -5819959 + AT_rich Low_complexity Low_complexity 1 29 0 3 1704 218 116 0 23 chr5 146717356 146717400 -5819859 + (TAA)n Simple_repeat Simple_repeat 2 44 0 3 1704 808 196 7 13 chr5 146717400 146717550 -5819709 + B1_Mur4 SINE Alu 1 149 -1 3 1704 816 250 11 0 chr5 146717844 146718024 -5819235 - B3 SINE B2 -34 182 1 3 1704 639 323 53 72 chr5 146718035 146718286 -5818973 - ORR1D2 LTR MaLR 0 370 110 3 1704 6496 98 18 27 chr5 146718286 146719197 -5818062 + RLTR13D6 LTR ERVK 1 902 0 3 1704 639 323 53 72 chr5 146719197 146719305 -5817954 - ORR1D2 LTR MaLR -261 109 18 3 1704 312 361 22 66 chr5 146719348 146719529 -5817730 + B4A SINE B4 2 174 -118 3 1704 229 305 17 0 chr5 146719583 146719669 -5817590 + (CACG)n Simple_repeat Simple_repeat 1 87 0 3 1704 332 89 0 0 chr5 146719669 146719714 -5817545 + HAL1-3A_ME LINE L1 1976 2020 -838 3 1704 409 297 36 9 chr5 146719720 146719832 -5817427 + B1F SINE Alu 4 118 -31 3 1704 323 227 45 0 chr5 146719924 146719990 -5817269 + MER77 LTR ERVL 1 69 -538 3 1704 431 250 27 22 chr5 146720051 146720184 -5817075 + ORR1D1 LTR MaLR 39 164 -210 3 1704 1744 255 58 43 chr5 146720184 146720291 -5816968 + RLTR20A LTR ERVK 1 96 -445 3 1704 182 37 37 0 chr5 146720291 146720318 -5816941 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3 1704 1744 255 58 43 chr5 146720318 146720655 -5816604 + RLTR20A LTR ERVK 97 449 -92 3 1704 402 21 0 0 chr5 146720655 146720702 -5816557 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 1704 1744 255 58 43 chr5 146720702 146720789 -5816470 + RLTR20A LTR ERVK 450 541 0 3 1704 994 194 25 10 chr5 146720797 146721000 -5816259 + ORR1D1 LTR MaLR 169 374 0 3 1704 371 203 25 0 chr5 146721193 146721313 -5815946 + B3A SINE B2 1 162 -36 3 1704 330 26 0 0 chr5 146721324 146721363 -5815896 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 1704 387 0 0 0 chr5 146721363 146721405 -5815854 + (GA)n Simple_repeat Simple_repeat 2 44 0 3 1704 737 72 27 0 chr5 146721440 146721551 -5815708 + (GTTTG)n Simple_repeat Simple_repeat 1 114 0 3 1704 681 309 28 9 chr5 146721551 146721763 -5815496 - ID_B1 SINE B4 -8 216 1 3 1704 1197 251 127 66 chr5 146722160 146722539 -5814720 - MTD LTR MaLR -13 406 5 3 1704 850 156 20 33 chr5 146722713 146722865 -5814394 + B1_Mur4 SINE Alu 1 150 0 3 1704 21 0 0 0 chr5 146723027 146723048 -5814211 + AT_rich Low_complexity Low_complexity 1 21 0 3 1704 454 219 5 38 chr5 146723083 146723268 -5813991 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 3 1704 243 300 40 79 chr5 146723274 146723350 -5813909 - B3 SINE B2 -106 110 38 3 1704 315 278 51 10 chr5 146723862 146723960 -5813299 + B3 SINE B2 103 204 -12 3 1704 756 201 36 7 chr5 146724136 146724276 -5812983 + B1_Mur3 SINE Alu 1 144 -5 3 1704 399 300 35 75 chr5 146724323 146724496 -5812763 + B4A SINE B4 127 292 0 3 1704 477 274 231 4 chr5 146724837 146725014 -5812245 - B3A SINE B2 -17 199 2 3 1704 501 309 45 26 chr5 146725049 146725205 -5812054 + B4A SINE B4 3 161 -131 3 1704 791 289 25 25 chr5 146725261 146725460 -5811799 + B3 SINE B2 15 213 -3 3 1704 508 191 21 21 chr5 146725455 146725551 -5811708 + RSINE1 SINE B4 29 124 -41 3 1704 453 36 0 0 chr5 146725551 146725606 -5811653 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 1704 2548 193 85 13 chr5 146725643 146726198 -5811061 - L1_Mur2 LINE L1 -48 5829 5235 3 1704 412 160 40 13 chr5 146726229 146726305 -5810954 - B1_Mur4 SINE Alu -1 149 72 3 1704 551 158 0 10 chr5 146726305 146726401 -5810858 - L1_Mur2 LINE L1 -619 5258 5164 3 1704 2523 215 44 31 chr5 146726418 146727004 -5810255 + RLTR17 LTR ERVK 98 691 -1 3 1704 418 138 0 0 chr5 146727007 146727065 -5810194 + RMER3D-int LTR ERVK 3 60 -2782 3 1704 3605 160 33 98 chr5 146727113 146728128 -5809131 + RMER17A2 LTR ERVK 1 958 0 3 1704 977 239 64 30 chr5 146728186 146728484 -5808775 + RMER3D-int LTR ERVK 165 472 -2370 3 1704 322 191 21 53 chr5 146728579 146728673 -5808586 + RMER3D-int LTR ERVK 1023 1113 -1729 3 1704 10817 85 13 16 chr5 146728672 146730134 -5807125 - MERVK26-int LTR ERVK -901 6018 4561 3 1704 663 127 18 0 chr5 146730825 146730935 -5806324 - URR1B DNA MER1_type 0 225 114 3 1704 2481 81 26 3 chr5 146730932 146731279 -5805980 - RLTR9F LTR ERVK -60 355 1 3 1704 403 102 42 28 chr5 146731284 146731355 -5805904 - ETnERV2-int LTR ERVK -4 7402 7331 3 1704 16112 160 47 30 chr5 146731565 146734503 -5802756 - ETnERV2-int LTR ERVK -977 6429 3441 3 1704 5394 182 51 42 chr5 146734726 146736387 -5800872 - ETnERV2-int LTR ERVK -3958 3448 814 3 1704 36517 52 15 5 chr5 146736392 146741588 -5795671 + L1Md_F2 LINE L1 339 5586 -297 3 1704 8664 46 1 2 chr5 146741588 146742585 -5794674 + L1Md_F2 LINE L1 5587 6582 0 3 1704 32931 77 7 3 chr5 146742594 146747815 -5789444 + L1Md_F2 LINE L1 255 5589 -297 3 1704 8493 54 7 0 chr5 146747815 146748804 -5788455 + L1Md_F2 LINE L1 5590 6585 0 3 1704 1983 122 125 19 chr5 146748804 146749164 -5788095 - ETnERV2-int LTR ERVK -5953 1453 1056 3 1704 788 246 89 23 chr5 146749146 146749404 -5787855 - ETnERV2-int LTR ERVK -2895 419 145 3 1704 692 190 0 0 chr5 146749405 146749526 -5787733 - L1Md_F LINE L1 -6016 503 383 3 1704 786 133 8 8 chr5 146749526 146749655 -5787604 - L1VL1 LINE L1 -6156 266 138 3 1704 2290 114 21 16 chr5 146749810 146750171 -5787088 - RLTR9F LTR ERVK -4 411 43 3 1704 13068 116 12 19 chr5 146750171 146753155 -5784104 + L1Md_F2 LINE L1 66 3035 -2848 4 1704 2251 73 0 0 chr5 146753142 146753428 -5783831 + L1Md_F2 LINE L1 5301 5586 -297 4 1704 8141 70 5 0 chr5 146753429 146754407 -5782852 + L1Md_F2 LINE L1 5588 6570 -12 4 1704 602 321 73 53 chr5 146754574 146754905 -5782354 + MTE2a LTR MaLR 6 339 -80 4 1704 916 119 8 0 chr5 146754945 146755079 -5782180 - L1_Mus1 LINE L1 -2 6565 6431 4 1704 8650 241 82 83 chr5 146755474 146759107 -5778152 - ETnERV2-int LTR ERVK -213 7193 3567 4 1704 36683 57 4 13 chr5 146759114 146764836 -5772423 - L1Md_F2 LINE L1 0 6582 928 4 1704 1243 195 169 4 chr5 146764834 146765112 -5772147 - L1Md_F2 LINE L1 -5987 629 306 4 1704 2846 152 53 16 chr5 146765168 146765731 -5771528 - ETnERV2-int LTR ERVK -3844 3562 2979 4 1704 828 243 80 28 chr5 146765710 146765922 -5771337 - ETnERV2-int LTR ERVK -4730 2676 2454 4 1704 495 113 255 10 chr5 146765935 146766033 -5771226 - RMER16-int LTR ERVK -4196 1210 1089 4 1704 2026 153 154 38 chr5 146766047 146766494 -5770765 - RMER16-int LTR ERVK -4595 811 313 4 1704 396 0 0 0 chr5 146766550 146766594 -5770665 + (TC)n Simple_repeat Simple_repeat 1 44 0 4 1704 660 244 32 0 chr5 146767477 146767600 -5769659 - ETnERV2-int LTR ERVK -213 7193 7067 4 1704 910 287 118 15 chr5 146767999 146768331 -5768928 + Lx8 LINE L1 7106 7471 -2 4 1704 557 283 73 22 chr5 146768435 146768805 -5768454 - RLTR11A2 LTR ERVK -27 414 1 4 1704 1219 56 21 0 chr5 146768808 146768952 -5768307 + B1_Mus1 SINE Alu 2 148 0 4 1704 3053 25 0 3 chr5 146769178 146769505 -5767754 + IAPLTR3 LTR ERVK 1 326 0 4 1704 60625 20 11 0 chr5 146769505 146776237 -5761022 + IAPLTR3-int LTR ERVK 1 6801 -20 4 1704 2887 25 28 0 chr5 146776237 146776554 -5760705 + IAPLTR3 LTR ERVK 1 326 0 4 1704 370 206 0 0 chr5 146776860 146776923 -5760336 - RodERV21-int LTR ERV1 -3342 1649 1587 4 1704 477 0 0 0 chr5 146776930 146776983 -5760276 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 4 1704 785 266 73 0 chr5 146777642 146777875 -5759384 - RodERV21-int LTR ERV1 -4050 941 692 4 1704 876 272 57 37 chr5 146778089 146778387 -5758872 - RodERV21-int LTR ERV1 -4681 310 7 4 1704 412 312 30 53 chr5 146778788 146778920 -5758339 + B3A SINE B2 63 191 -25 4 1704 1660 156 117 86 chr5 146778958 146779344 -5757915 + RMER10B LTR ERVL 1 398 0 4 1704 667 205 0 8 chr5 146779379 146779502 -5757757 + RMER10B LTR ERVL 1 122 -276 4 1704 1177 90 6 6 chr5 146779534 146779701 -5757558 - RMER19A LTR ERVK 0 737 571 4 1704 1062 167 58 10 chr5 146779698 146779904 -5757355 - RMER19A LTR ERVK -521 216 1 4 1704 691 300 55 5 chr5 146780581 146780782 -5756477 + ID_B1 SINE B4 9 219 -5 4 1704 774 308 15 5 chr5 146780924 146781126 -5756133 + B3 SINE B2 10 213 -3 4 1704 5312 127 25 2 chr5 146781966 146782802 -5754457 + Lx3_Mus LINE L1 5729 6583 -426 4 1704 1428 141 30 8 chr5 146782802 146783038 -5754221 + Lx3_Mus LINE L1 6758 6998 -11 4 1704 7853 117 6 52 chr5 146783052 146784607 -5752652 - L1_Mus3 LINE L1 -2 6636 5225 4 1704 387 98 0 0 chr5 146784607 146784668 -5752591 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1704 603 0 0 0 chr5 146784671 146784738 -5752521 + (GA)n Simple_repeat Simple_repeat 1 67 0 4 1704 3676 188 6 156 chr5 146784738 146784992 -5752267 - L1_Mus3 LINE L1 -653 5224 4974 4 1704 2084 318 53 36 chr5 146785008 146785984 -5751275 - Lx7 LINE L1 0 7473 6453 4 1704 1140 269 99 13 chr5 146786058 146786450 -5750809 - Lx8 LINE L1 -1 7472 7047 4 1704 236 242 30 15 chr5 146786641 146786708 -5750551 - B4A SINE B4 -4 288 221 4 1704 490 301 44 44 chr5 146786734 146786894 -5750365 - RSINE1 SINE B4 0 165 6 4 1704 494 325 82 6 chr5 146786885 146787055 -5750204 - B4A SINE B4 -46 246 64 4 1704 1402 230 121 48 chr5 146787161 146787576 -5749683 + RMER19C LTR ERVK 121 565 -46 4 1704 1272 255 59 20 chr5 146787703 146788059 -5749200 - MTE2a LTR MaLR -2 377 8 4 1704 2630 118 35 30 chr5 146788167 146788568 -5748691 - RLTR9D LTR ERVK 0 403 1 4 1704 1910 182 90 11 chr5 146790160 146790516 -5746743 - ORR1C2 LTR MaLR 0 384 1 4 1704 27 29 0 0 chr5 146790690 146790724 -5746535 + AT_rich Low_complexity Low_complexity 1 34 0 4 1704 1220 117 16 27 chr5 146790736 146790892 -5746367 + B2_Mm2 SINE B2 4 158 -37 4 1704 297 0 0 0 chr5 146790892 146790925 -5746334 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 4 1704 1220 117 16 27 chr5 146790925 146790953 -5746306 + B2_Mm2 SINE B2 159 186 -9 4 1704 282 73 0 0 chr5 146790954 146790995 -5746264 + L1_Mus2 LINE L1 6526 6566 0 4 1704 421 328 85 39 chr5 146791195 146791455 -5745804 + RLTR12B LTR ERVK 17 288 -240 4 1704 206 333 139 13 chr5 146791908 146792066 -5745193 + MER5B DNA MER1_type 1 178 0 4 1704 849 182 16 74 chr5 146792400 146792590 -5744669 + ORR1D1 LTR MaLR 3 181 -193 4 1704 318 48 30 45 chr5 146792590 146792656 -5744603 + (TCTCTG)n Simple_repeat Simple_repeat 4 68 0 4 1704 456 276 67 33 chr5 146792661 146792871 -5744388 + ORR1D1 LTR MaLR 158 374 0 4 1704 207 0 0 0 chr5 146793347 146793370 -5743889 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4 1704 210 296 26 61 chr5 146793527 146793642 -5743617 + CT-rich Low_complexity Low_complexity 1 111 0 4 1704 448 354 54 33 chr5 146794005 146794245 -5743014 + B4A SINE B4 1 245 -47 4 1704 309 51 0 0 chr5 146794323 146794362 -5742897 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1704 774 221 28 0 chr5 146795149 146795294 -5741965 + RSINE1 SINE B4 2 150 -15 4 1704 542 333 0 28 chr5 146795672 146795817 -5741442 + B3A SINE B2 2 142 -56 4 1704 462 141 49 14 chr5 146795817 146795961 -5741298 + CT-rich Low_complexity Low_complexity 2 150 0 4 1704 1577 206 25 76 chr5 146795982 146796349 -5740910 - ORR1B1 LTR MaLR -45 349 2 4 1704 413 198 0 10 chr5 146796874 146796971 -5740288 + GA-rich Low_complexity Low_complexity 1 96 0 4 1704 440 310 0 17 chr5 146797472 146797587 -5739672 + RSINE1 SINE B4 53 165 0 4 1704 1077 240 0 63 chr5 146798736 146798958 -5738301 - B3 SINE B2 -8 208 1 4 1704 284 262 25 12 chr5 146799132 146799213 -5738046 + MTEb LTR MaLR 6 87 -292 4 1704 393 237 0 26 chr5 146799297 146799313 -5737946 - B3A SINE B2 -36 162 148 4 1704 540 89 0 0 chr5 146799313 146799392 -5737867 + (TG)n Simple_repeat Simple_repeat 2 80 0 4 1704 393 229 327 14 chr5 146799392 146799502 -5737757 - B3A SINE B2 -51 147 2 4 1704 788 219 73 6 chr5 146799503 146799668 -5737591 + MTEb LTR MaLR 108 283 -96 4 1704 530 272 123 18 chr5 146799680 146799908 -5737351 + L1MC1 LINE L1 6077 6328 -5 4 1704 306 340 43 37 chr5 146799928 146800090 -5737169 + RSINE1 SINE B4 3 165 0 4 1704 496 315 90 43 chr5 146800147 146800426 -5736833 + B4A SINE B4 1 292 0 4 1704 369 131 35 45 chr5 146800427 146800633 -5736626 + (CA)n Simple_repeat Simple_repeat 1 203 0 4 26 243 0 0 0 chr5 146800635 146800662 -5736597 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 4 1705 972 254 9 9 chr5 146801684 146801895 -5735364 + B3 SINE B2 1 211 -5 4 1705 215 191 48 0 chr5 146801953 146801995 -5735264 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4 1705 766 352 37 21 chr5 146803158 146803714 -5733545 + Lx9 LINE L1 6898 7473 0 4 1705 524 330 140 38 chr5 146803752 146804401 -5732858 + L1MB8 LINE L1 5456 6163 -15 4 1705 3292 167 88 35 chr5 146804963 146805313 -5731946 - RMER6D LTR ERVK 0 720 362 4 1705 444 62 0 0 chr5 146805313 146805377 -5731882 + (CCA)n Simple_repeat Simple_repeat 2 65 0 4 1705 3292 167 88 35 chr5 146805377 146805426 -5731833 - RMER6D LTR ERVK -359 361 318 4 1705 2510 131 67 19 chr5 146805426 146805846 -5731413 + BGLII_B LTR ERVK 1 440 -1 4 1705 3292 167 88 35 chr5 146805846 146806127 -5731132 - RMER6D LTR ERVK -403 317 3 4 1705 192 158 0 0 chr5 146807145 146807183 -5730076 + (TA)n Simple_repeat Simple_repeat 1 38 0 4 1705 859 312 100 19 chr5 146807189 146807927 -5729332 + L1MD LINE L1 4018 4815 -1331 4 1705 895 236 52 0 chr5 146808017 146808208 -5729051 - B3 SINE B2 -15 201 1 4 1705 250 321 81 6 chr5 146808217 146808377 -5728882 + L1MD LINE L1 4858 5029 -1117 4 1705 663 243 7 28 chr5 146808417 146808561 -5728698 + ID_B1 SINE B4 3 143 -81 4 1705 227 200 18 0 chr5 146808587 146808642 -5728617 + L1MD LINE L1 5077 5132 -1014 4 1705 1273 264 87 24 chr5 146808873 146809242 -5728017 + MTD LTR MaLR 1 392 -27 4 1705 198 0 0 0 chr5 146809242 146809264 -5727995 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 4 1705 1250 162 10 5 chr5 146809266 146809458 -5727801 - B2_Mm2 SINE B2 -2 193 1 4 1705 233 146 0 20 chr5 146809548 146809597 -5727662 + (TA)n Simple_repeat Simple_repeat 2 49 0 4 1705 1875 167 145 3 chr5 146809693 146810024 -5727235 + ORR1C1 LTR MaLR 1 378 0 4 1705 291 254 77 26 chr5 146810448 146810565 -5726694 + BC1_Mm scRNA scRNA 2 128 -24 4 1705 530 333 28 9 chr5 146811040 146811252 -5726007 - Lx8 LINE L1 -521 6952 6737 4 1705 488 324 64 9 chr5 146811240 146811482 -5725777 + Lx7 LINE L1 6942 7207 -266 4 1705 559 283 132 4 chr5 146811496 146811762 -5725497 - Lx8 LINE L1 -59 7414 7115 4 1705 379 240 30 112 chr5 146811889 146812058 -5725201 + URR1B DNA MER1_type 71 225 0 4 1705 357 321 9 0 chr5 146812058 146812164 -5725095 + Lx8 LINE L1 6853 6959 -514 4 1705 2246 176 37 7 chr5 146812164 146812571 -5724688 - MTC LTR MaLR 0 421 3 4 1705 426 280 12 74 chr5 146812573 146812735 -5724524 + Lx8 LINE L1 6959 7110 -363 4 1705 3239 161 21 12 chr5 146813241 146813757 -5723502 - Lx4A LINE L1 -13 7045 6525 4 1705 809 132 8 0 chr5 146813875 146813996 -5723263 - B1_Mur4 SINE Alu -20 130 9 4 1705 526 248 25 8 chr5 146814007 146814129 -5723130 + B1_Mur1 SINE Alu 11 134 -15 4 1705 881 273 14 0 chr5 146814159 146814368 -5722891 + B3 SINE B2 1 212 -4 4 1705 866 196 0 0 chr5 146814418 146814561 -5722698 + B1_Mus1 SINE Alu 1 143 -5 4 1705 1541 205 102 9 chr5 146815494 146815829 -5721430 + ORR1B2 LTR MaLR 2 367 0 4 1705 287 211 0 0 chr5 146815830 146815882 -5721377 + ORR1B2-int LTR MaLR 2 53 -1456 4 1705 5856 187 126 15 chr5 146815882 146816700 -5720559 + ORR1B2-int LTR MaLR 8 917 -592 4 1705 3859 136 85 20 chr5 146816700 146817405 -5719854 - RMER17A LTR ERVK 0 751 1 4 1705 5856 187 126 15 chr5 146817405 146817717 -5719542 + ORR1B2-int LTR MaLR 918 1260 -249 4 1705 195 42 0 0 chr5 146817717 146817741 -5719518 + (TTCCC)n Simple_repeat Simple_repeat 4 27 0 4 1705 5856 187 126 15 chr5 146817741 146817961 -5719298 + ORR1B2-int LTR MaLR 1261 1508 -1 4 1705 1479 150 234 46 chr5 146817963 146818270 -5718989 + ORR1B2 LTR MaLR 3 367 0 4 1705 21 0 0 0 chr5 146818707 146818728 -5718531 + AT_rich Low_complexity Low_complexity 1 21 0 4 1705 689 291 101 0 chr5 146818728 146818917 -5718342 - B3 SINE B2 -7 209 2 4 1705 1668 110 18 37 chr5 146819118 146819391 -5717868 - ORR1A2 LTR MaLR -8 319 52 4 1705 281 128 0 0 chr5 146819471 146819518 -5717741 - ORR1A2 LTR MaLR -280 49 3 4 1705 1522 185 124 25 chr5 146819707 146820071 -5717188 + MTD LTR MaLR 13 404 -15 4 1705 745 265 161 55 chr5 146820258 146820454 -5716805 - MTD LTR MaLR 0 419 184 4 1705 876 86 0 0 chr5 146820454 146820594 -5716665 + (TG)n Simple_repeat Simple_repeat 1 140 0 4 1705 745 265 161 55 chr5 146820594 146820776 -5716483 - MTD LTR MaLR -236 183 2 4 1705 390 321 18 0 chr5 146821654 146821763 -5715496 - Lx8 LINE L1 -428 7045 6935 4 1705 21 0 0 0 chr5 146821776 146821797 -5715462 + AT_rich Low_complexity Low_complexity 1 21 0 4 1705 987 185 16 22 chr5 146822678 146822860 -5714399 - URR1B DNA MER1_type -43 182 2 4 1705 21 0 0 0 chr5 146823397 146823418 -5713841 + AT_rich Low_complexity Low_complexity 1 21 0 4 1705 539 312 92 33 chr5 146823468 146823740 -5713519 - B4A SINE B4 0 292 5 5 1705 753 240 0 55 chr5 146824207 146824245 -5713014 - B3 SINE B2 -18 198 166 5 1705 369 0 0 0 chr5 146824245 146824286 -5712973 + (TATG)n Simple_repeat Simple_repeat 2 42 0 5 1705 753 240 0 55 chr5 146824286 146824428 -5712831 - B3 SINE B2 -51 165 28 5 1705 408 20 0 0 chr5 146824438 146824487 -5712772 + (TC)n Simple_repeat Simple_repeat 2 50 0 5 1705 626 338 50 21 chr5 146824488 146824730 -5712529 - Lx8 LINE L1 -143 7330 7082 5 1705 600 229 17 0 chr5 146824771 146824889 -5712370 - ORR1D1 LTR MaLR 0 374 255 5 1705 1798 166 68 15 chr5 146824888 146825224 -5712035 + ORR1B1 LTR MaLR 41 394 0 5 1705 521 220 30 47 chr5 146825271 146825417 -5711842 - ORR1D1 LTR MaLR -162 208 67 5 1705 2744 220 71 194 chr5 146825874 146826116 -5711143 - RMER1B Other Other -13 1053 772 5 1705 4156 107 71 84 chr5 146826116 146826936 -5710323 + RMER17D2 LTR ERVK 1 809 0 5 1705 2744 220 71 194 chr5 146826936 146827893 -5709366 - RMER1B Other Other -295 771 2 5 1705 369 241 12 11 chr5 146827911 146828063 -5709196 - ORR1D1 LTR MaLR -2 372 129 5 1705 742 187 75 0 chr5 146828065 146828199 -5709060 + B1_Mur4 SINE Alu 1 144 -6 5 1705 188 88 0 56 chr5 146828207 146828243 -5709016 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 5 1705 225 231 246 0 chr5 146828243 146828308 -5708951 - ORR1D1 LTR MaLR -232 142 62 5 1705 330 164 0 0 chr5 146828316 146828371 -5708888 - ORR1B1 LTR MaLR 0 394 340 5 1705 239 109 0 52 chr5 146829235 146829293 -5707966 + T-rich Low_complexity Low_complexity 1 55 0 5 1705 1391 182 62 75 chr5 146829506 146829814 -5707445 - ORR1B1 LTR MaLR -44 350 47 5 1705 258 169 164 33 chr5 146829821 146829882 -5707377 - ORR1B1 LTR MaLR -301 69 1 5 1705 1024 239 49 0 chr5 146830459 146830664 -5706595 - B3 SINE B2 0 216 2 5 1705 336 246 42 76 chr5 146830709 146830828 -5706431 - Lx8 LINE L1 -354 7119 7005 5 1705 2167 188 8 3 chr5 146831220 146831604 -5705655 - ORR1B1 LTR MaLR -8 386 1 5 1705 5153 49 3 3 chr5 146831705 146832302 -5704957 - L1Md_F3 LINE L1 0 6584 5988 5 1705 22 35 0 0 chr5 146832418 146832447 -5704812 + AT_rich Low_complexity Low_complexity 1 29 0 5 1705 680 292 28 11 chr5 146832596 146832776 -5704483 - B3A SINE B2 -15 183 1 5 1705 915 251 28 125 chr5 146833659 146834082 -5703177 + MTD LTR MaLR 8 389 -30 5 1705 207 243 0 0 chr5 146834469 146834506 -5702753 + (CCA)n Simple_repeat Simple_repeat 1 37 0 5 1705 994 237 0 0 chr5 146834506 146834700 -5702559 - B3 SINE B2 -14 202 9 5 1705 462 252 35 9 chr5 146834731 146834847 -5702412 - PB1D9 SINE Alu -1 119 1 5 1705 598 291 159 12 chr5 146834958 146835374 -5701885 + L1_Mur2 LINE L1 4376 4818 -1059 5 1705 605 285 25 12 chr5 146835377 146835560 -5701699 - B3A SINE B2 -9 184 1 5 1705 450 301 103 29 chr5 146835560 146836209 -5701050 + L1_Mur2 LINE L1 4791 5583 -714 5 1705 793 299 55 4 chr5 146836285 146836520 -5700739 - MTEa LTR MaLR -105 274 28 5 1705 189 0 0 0 chr5 146836560 146836581 -5700678 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5 1705 488 269 69 13 chr5 146838764 146838944 -5698315 + B3A SINE B2 2 187 -8 5 1705 288 0 0 0 chr5 146838945 146838977 -5698282 + (TG)n Simple_repeat Simple_repeat 1 32 0 5 1705 307 222 48 36 chr5 146839787 146839871 -5697388 - MTE2b LTR MaLR 0 379 295 5 1705 230 97 0 0 chr5 146839871 146839902 -5697357 - Lx3C LINE L1 -294 6682 6652 5 1705 444 19 0 0 chr5 146839903 146839956 -5697303 + (CA)n Simple_repeat Simple_repeat 2 54 0 5 1705 724 246 106 15 chr5 146840017 146840215 -5697044 - B3 SINE B2 0 216 1 5 1705 201 155 34 17 chr5 146840343 146840402 -5696857 + CT-rich Low_complexity Low_complexity 3 62 0 5 1705 1914 135 30 59 chr5 146840870 146841209 -5696050 + ORR1A4 LTR MaLR 1 329 0 5 1705 682 260 22 11 chr5 146841519 146841702 -5695557 + RMER15 LTR ERVL 294 478 -97 5 1705 748 280 10 10 chr5 146842631 146842840 -5694419 - Lx7 LINE L1 -392 7304 7096 5 1705 2090 163 50 12 chr5 146842854 146843257 -5694002 + MTC LTR MaLR 1 418 -3 5 1705 35940 74 3 4 chr5 146843258 146848762 -5688497 + L1Md_F3 LINE L1 460 5953 -631 5 1705 36094 36 0 0 chr5 146848759 146854401 -5682858 + L1Md_T LINE L1 1 5589 -297 5 1705 9008 9 3 0 chr5 146854401 146855394 -5681865 + L1Md_T LINE L1 5590 6585 0 5 1705 724 0 0 0 chr5 146855394 146855473 -5681786 + L1Md_F3 LINE L1 5942 6020 -564 5 1705 2603 63 0 0 chr5 146855482 146855830 -5681429 - IAPEY2_LTR LTR ERVK -7 350 3 5 1705 23 0 0 71 chr5 146855847 146855889 -5681370 + AT_rich Low_complexity Low_complexity 1 39 0 5 1705 18549 55 6 1 chr5 146855912 146858889 -5678370 - L1Md_F3 LINE L1 0 6584 3590 5 1705 813 74 8 0 chr5 146858887 146859008 -5678251 - L1Md_F3 LINE L1 -5675 1049 928 5 1705 232 200 0 0 chr5 146859006 146859046 -5678213 - L1Md_F3 LINE L1 -5987 629 590 5 1705 724 228 367 0 chr5 146859047 146859284 -5677975 - L1Md_F3 LINE L1 -5987 629 306 5 1705 5558 76 56 0 chr5 146859320 146860053 -5677206 - IAPEY3-int LTR ERVK 0 7680 6907 5 1705 502 34 0 0 chr5 146860053 146860112 -5677147 - IAPEY3-int LTR ERVK -2770 4910 4852 5 1705 3647 72 23 0 chr5 146860079 146860550 -5676709 - IAPEY3-int LTR ERVK -4957 2723 2242 5 1705 9345 128 13 37 chr5 146860530 146862025 -5675234 - IAPEY3-int LTR ERVK -5698 1982 524 5 1705 822 128 49 49 chr5 146862024 146862188 -5675071 - IAPLTR4_I LTR ERVK -1290 180 17 5 1705 2747 51 0 0 chr5 146862188 146862541 -5674718 - IAPEY2_LTR LTR ERVK -3 354 2 5 1705 4673 34 27 0 chr5 146862541 146863094 -5674165 + L1Md_F3 LINE L1 6015 6582 -2 5 1705 27 49 0 0 chr5 146863210 146863251 -5674008 + AT_rich Low_complexity Low_complexity 1 41 0 5 1705 5580 105 52 66 chr5 146863295 146863469 -5673790 - L1VL2 LINE L1 -2488 1127 961 5 1705 1189 61 0 0 chr5 146863469 146863616 -5673643 - B1_Mm SINE Alu 0 147 1 5 1705 5580 101 86 35 chr5 146863616 146864401 -5672858 - L1VL2 LINE L1 -5375 960 121 5 1705 1272 176 4 28 chr5 146866505 146866756 -5670503 + ORR1D1 LTR MaLR 3 247 -127 5 1705 2162 183 47 20 chr5 146866759 146867205 -5670054 + RLTR26 LTR ERVK 1 458 -184 5 1705 1776 43 0 0 chr5 146867205 146867415 -5669844 - L1_Mus1 LINE L1 0 6567 6358 5 1705 587 65 13 0 chr5 146867415 146867492 -5669767 + L1_Mus1 LINE L1 6210 6287 -279 5 1705 558 242 77 15 chr5 146867494 146867624 -5669635 + RLTR26 LTR ERVK 453 590 -52 5 1705 4811 141 17 1 chr5 146868014 146868712 -5668547 - ETnERV2-int LTR ERVK -204 7202 6494 5 1705 793 294 15 12 chr5 146868744 146869101 -5668158 - RLTR45-int LTR ERVK -389 7828 7506 5 1705 5250 136 83 106 chr5 146869103 146870287 -5666972 - RLTR45-int LTR ERVK -1173 6071 4916 5 1705 33130 77 1 4 chr5 146870289 146875329 -5661930 + L1Md_F2 LINE L1 561 5586 -297 5 1705 8021 57 6 0 chr5 146875330 146876319 -5660940 + L1Md_F2 LINE L1 5588 6582 0 5 1705 1354 53 11 16 chr5 146876316 146876506 -5660753 + L1Md_F2 LINE L1 6382 6570 -12 5 1705 296 250 28 0 chr5 146877165 146877237 -5660022 - MTE2b LTR MaLR 0 379 306 5 1705 280 100 0 0 chr5 146877240 146877280 -5659979 - Lx3C LINE L1 -285 6691 6652 5 1705 423 0 0 0 chr5 146877281 146877328 -5659931 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1705 724 246 106 15 chr5 146877400 146877598 -5659661 - B3 SINE B2 0 216 1 5 1705 204 161 32 16 chr5 146877722 146877785 -5659474 + CT-rich Low_complexity Low_complexity 3 66 0 5 1705 1977 133 20 58 chr5 146878253 146878595 -5658664 + ORR1A4 LTR MaLR 1 329 0 5 1705 688 260 22 11 chr5 146878900 146879083 -5658176 + RMER15 LTR ERVL 294 478 -97 5 1705 762 267 14 14 chr5 146880013 146880222 -5657037 - Lx7 LINE L1 -392 7304 7096 5 1705 2185 156 57 10 chr5 146880236 146880638 -5656621 + MTC LTR MaLR 1 421 0 5 1705 335 313 0 34 chr5 146881069 146881188 -5656071 + Lx8 LINE L1 7005 7119 -354 5 1705 881 239 49 0 chr5 146881236 146881441 -5655818 + B3 SINE B2 2 216 0 5 1705 353 191 0 29 chr5 146882007 146882077 -5655182 + ORR1B1 LTR MaLR 1 68 -306 5 1705 1226 189 62 75 chr5 146882084 146882392 -5654867 + ORR1B1 LTR MaLR 47 350 -44 5 1705 261 22 43 21 chr5 146882596 146882643 -5654616 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 5 1705 299 182 0 0 chr5 146883535 146883590 -5653669 + ORR1B1 LTR MaLR 340 394 0 5 1705 245 53 0 50 chr5 146883659 146883699 -5653560 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 5 1705 646 201 75 0 chr5 146883707 146883841 -5653418 - B1_Mur4 SINE Alu -6 144 1 5 1705 343 237 614 20 chr5 146883843 146883996 -5653263 + ORR1D1 LTR MaLR 129 372 -2 5 1705 2836 218 79 196 chr5 146884014 146884961 -5652298 + RMER1B Other Other 2 771 -295 5 1705 3826 124 127 8 chr5 146884961 146885684 -5651575 - RMER17D2 LTR ERVK 0 809 1 5 1705 2836 218 79 196 chr5 146885684 146885928 -5651331 + RMER1B Other Other 772 1053 -13 5 1705 351 0 0 0 chr5 146886392 146886431 -5650828 + (TG)n Simple_repeat Simple_repeat 2 40 0 5 1705 533 187 31 47 chr5 146886432 146886561 -5650698 + ORR1D1 LTR MaLR 87 213 -161 5 1705 1767 165 62 15 chr5 146886591 146886929 -5650330 - ORR1B1 LTR MaLR 0 394 41 5 1705 597 212 17 0 chr5 146886928 146887046 -5650213 + ORR1D1 LTR MaLR 255 374 0 5 1705 610 350 77 27 chr5 146887087 146887333 -5649926 + Lx8 LINE L1 7079 7331 -142 5 1705 447 19 0 0 chr5 146887333 146887385 -5649874 + (GA)n Simple_repeat Simple_repeat 2 53 0 5 1705 610 350 77 27 chr5 146887385 146887514 -5649745 + Lx8 LINE L1 7332 7472 -1 5 1705 693 237 69 0 chr5 146887571 146887713 -5649546 + B3 SINE B2 28 173 -43 5 1705 408 20 0 0 chr5 146887713 146887762 -5649497 + (CATA)n Simple_repeat Simple_repeat 2 50 0 5 1705 693 237 69 0 chr5 146887762 146887792 -5649467 + B3 SINE B2 174 211 -5 5 1705 379 319 92 33 chr5 146888269 146888541 -5648718 + B4A SINE B4 5 292 0 5 1705 226 302 91 23 chr5 146888661 146888793 -5648466 + MLT1A0 LTR MaLR 1 141 -224 5 1705 1102 156 16 22 chr5 146889168 146889351 -5647908 + URR1B DNA MER1_type 1 182 -43 5 1705 364 321 18 0 chr5 146890263 146890372 -5646887 + Lx8 LINE L1 6935 7045 -428 5 1705 387 342 60 42 chr5 146891250 146891418 -5645841 + MTE2a LTR MaLR 1 171 -250 5 1705 438 79 0 0 chr5 146891431 146891494 -5645765 + (CA)n Simple_repeat Simple_repeat 2 64 0 5 1705 493 292 106 16 chr5 146891501 146891689 -5645570 + MTE2a LTR MaLR 175 379 0 5 1705 1410 189 27 24 chr5 146891893 146892210 -5645049 - MTD LTR MaLR -14 405 13 5 1705 270 149 0 0 chr5 146892404 146892451 -5644808 + ORR1A2 LTR MaLR 3 49 -280 5 1705 1677 107 18 37 chr5 146892531 146892804 -5644455 + ORR1A2 LTR MaLR 52 319 -8 5 1705 621 275 99 16 chr5 146893007 146893199 -5644060 + B3 SINE B2 2 209 -7 5 1705 22 0 0 0 chr5 146893199 146893221 -5644038 + AT_rich Low_complexity Low_complexity 1 22 0 5 1705 1291 144 246 43 chr5 146893659 146893964 -5643295 - ORR1B2 LTR MaLR 0 367 1 5 1705 6175 181 89 46 chr5 146893964 146894196 -5643063 - ORR1B2-int LTR MaLR 0 1509 1256 5 1705 801 0 0 0 chr5 146894196 146894285 -5642974 + (GGGAA)n Simple_repeat Simple_repeat 2 90 0 5 1705 6175 181 89 46 chr5 146894285 146894622 -5642637 - ORR1B2-int LTR MaLR -254 1255 918 5 1705 3745 138 78 17 chr5 146894622 146895330 -5641929 + RMER17A LTR ERVK 1 751 0 5 1705 6175 181 89 46 chr5 146895330 146896204 -5641055 - ORR1B2-int LTR MaLR -592 917 2 5 1705 1601 180 98 9 chr5 146896206 146896542 -5640717 - ORR1B2 LTR MaLR 0 367 2 5 1705 822 206 0 0 chr5 146897466 146897612 -5639647 - B1_Mus1 SINE Alu -2 146 1 5 1705 240 269 74 0 chr5 146897612 146897654 -5639605 - ORR1B2-int LTR MaLR -863 646 594 5 1705 819 270 14 0 chr5 146897660 146897871 -5639388 - B3 SINE B2 -2 214 1 5 1705 527 256 24 8 chr5 146897897 146898023 -5639236 - B1_Mur1 SINE Alu -11 138 11 5 1705 803 120 8 39 chr5 146898025 146898155 -5639104 + B1_Mur4 SINE Alu 5 130 -20 5 1705 346 292 7 68 chr5 146898032 146898179 -5639080 + ID_B1 SINE B4 87 224 0 6 1705 3334 139 4 12 chr5 146898277 146898792 -5638467 + Lx4A LINE L1 6535 7045 -13 6 1705 22 56 0 0 chr5 146898792 146898828 -5638431 + AT_rich Low_complexity Low_complexity 1 36 0 6 1705 381 309 6 56 chr5 146899288 146899449 -5637810 - Lx8 LINE L1 -363 7110 6958 6 1705 2251 163 37 12 chr5 146899452 146899651 -5637608 + MTC LTR MaLR 3 200 -221 6 1705 2797 59 0 17 chr5 146899651 146900012 -5637247 + L1Md_F2 LINE L1 6218 6572 -10 6 1705 2251 163 37 12 chr5 146900012 146900221 -5637038 + MTC LTR MaLR 201 420 -1 6 1705 298 330 9 0 chr5 146900221 146900327 -5636932 - Lx8 LINE L1 -514 6959 6853 6 1705 385 253 30 102 chr5 146900327 146900494 -5636765 - URR1B DNA MER1_type 0 225 71 6 1705 571 268 149 4 chr5 146900621 146900883 -5636376 + Lx8 LINE L1 7115 7414 -59 6 1705 384 341 52 12 chr5 146900897 146901146 -5636113 - Lx8 LINE L1 -266 7207 6949 6 1705 502 311 29 10 chr5 146901127 146901335 -5635924 + Lx8 LINE L1 6737 6948 -525 6 1705 289 297 80 9 chr5 146901814 146901926 -5635333 - BC1_Mm scRNA scRNA -31 121 2 6 1705 1853 168 135 0 chr5 146902352 146902685 -5634574 - ORR1C1 LTR MaLR 0 378 1 6 1705 238 67 22 22 chr5 146902778 146902824 -5634435 + (TA)n Simple_repeat Simple_repeat 2 47 0 6 1705 1083 170 32 0 chr5 146902915 146903103 -5634156 + B2_Mm2 SINE B2 2 195 0 6 1705 683 160 15 0 chr5 146903103 146903234 -5634025 + GA-rich Low_complexity Low_complexity 4 136 0 6 1705 1244 257 92 27 chr5 146903234 146903602 -5633657 - MTD LTR MaLR -27 392 1 6 1705 653 243 7 28 chr5 146903914 146904058 -5633201 - ID_B1 SINE B4 -81 143 3 6 1705 370 285 93 19 chr5 146904097 146904258 -5633001 - L1MD LINE L1 -1116 5030 4858 6 1705 747 254 53 5 chr5 146904267 146904457 -5632802 + B3 SINE B2 1 199 -17 6 1705 561 310 100 27 chr5 146904542 146905290 -5631969 - L1MD LINE L1 -1326 4820 4018 6 1705 232 218 18 0 chr5 146905290 146905345 -5631914 + (TA)n Simple_repeat Simple_repeat 2 57 0 6 1705 3498 172 51 54 chr5 146906347 146906659 -5630600 + RMER6D LTR ERVK 3 306 -414 6 1705 1088 95 0 0 chr5 146906659 146906806 -5630453 + B1_Mus2 SINE Alu 1 147 0 6 1705 3498 172 51 54 chr5 146906806 146906838 -5630421 + RMER6D LTR ERVK 307 317 -403 6 1705 2406 133 37 25 chr5 146906838 146907271 -5629988 - BGLII_B LTR ERVK -1 440 3 6 1705 3498 172 51 54 chr5 146907271 146907319 -5629940 + RMER6D LTR ERVK 318 385 -335 6 1705 789 93 0 0 chr5 146907319 146907448 -5629811 + (TGG)n Simple_repeat Simple_repeat 2 130 0 6 1705 261 0 0 0 chr5 146907449 146907478 -5629781 + (TG)n Simple_repeat Simple_repeat 2 30 0 6 1705 3498 172 51 54 chr5 146907478 146907801 -5629458 + RMER6D LTR ERVK 386 720 0 6 1705 455 316 118 53 chr5 146908351 146908655 -5628604 - L1MB7 LINE L1 -3 6181 5858 6 1705 271 362 31 27 chr5 146908700 146908961 -5628298 - L1MB7 LINE L1 -407 5767 5506 6 1705 30 0 0 0 chr5 146909041 146909071 -5628188 + AT_rich Low_complexity Low_complexity 1 30 0 6 1705 411 145 0 0 chr5 146909189 146909258 -5628001 + (TA)n Simple_repeat Simple_repeat 1 69 0 6 1705 660 342 37 26 chr5 146909258 146909712 -5627547 - Lx9 LINE L1 -127 7517 7059 6 1705 1053 225 9 9 chr5 146911011 146911222 -5626037 - B3 SINE B2 -5 211 1 6 1705 21 71 0 0 chr5 146912083 146912125 -5625134 + AT_rich Low_complexity Low_complexity 1 42 0 6 1705 306 0 0 0 chr5 146912277 146912311 -5624948 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6 1705 357 175 29 40 chr5 146912333 146912506 -5624753 + (TG)n Simple_repeat Simple_repeat 2 172 0 6 1705 370 314 72 65 chr5 146912514 146912804 -5624455 - B4A SINE B4 0 292 1 6 1705 254 355 31 25 chr5 146912860 146913022 -5624237 - RSINE1 SINE B4 0 165 3 6 1705 381 279 24 24 chr5 146913042 146913207 -5624052 - L1MC1 LINE L1 -5 6328 6164 6 1705 764 232 73 6 chr5 146913282 146913447 -5623812 - MTEb LTR MaLR -96 283 108 6 1705 550 234 248 0 chr5 146913448 146913593 -5623666 + B3A SINE B2 2 182 -16 6 1705 799 279 0 67 chr5 146913957 146914180 -5623079 + B3 SINE B2 1 208 -8 6 1705 524 274 0 17 chr5 146915316 146915431 -5621828 - RSINE1 SINE B4 0 165 53 6 1705 673 43 21 0 chr5 146915935 146916028 -5621231 + (TC)n Simple_repeat Simple_repeat 1 95 0 6 1705 1868 194 29 68 chr5 146916572 146916981 -5620278 + ORR1B1 LTR MaLR 2 394 0 6 1705 841 192 39 34 chr5 146916981 146917158 -5620101 - ORR1C2 LTR MaLR -31 353 176 6 1705 475 124 45 30 chr5 146917159 146917283 -5619976 + GA-rich Low_complexity Low_complexity 2 128 0 6 1705 1287 84 0 0 chr5 146917283 146917461 -5619798 + (GAGAA)n Simple_repeat Simple_repeat 1 178 0 6 1705 421 286 33 11 chr5 146917479 146917571 -5619688 - B3A SINE B2 -57 141 48 6 1705 277 43 43 0 chr5 146917593 146917640 -5619619 + (TTTTTG)n Simple_repeat Simple_repeat 5 53 0 6 1705 236 271 0 0 chr5 146917640 146917688 -5619571 - B3A SINE B2 -145 53 6 6 1705 703 226 20 0 chr5 146918075 146918221 -5619038 - RSINE1 SINE B4 -15 150 2 6 1705 2904 49 0 3 chr5 146918739 146919085 -5618174 - IAPLTR4 LTR ERVK 0 345 1 6 1705 189 0 0 0 chr5 146919350 146919371 -5617888 + (CA)n Simple_repeat Simple_repeat 1 21 0 6 1705 252 0 0 0 chr5 146919373 146919401 -5617858 + (TG)n Simple_repeat Simple_repeat 2 29 0 6 1705 431 351 46 29 chr5 146919480 146919718 -5617541 - B4A SINE B4 -50 242 1 6 1705 195 184 0 0 chr5 146920115 146920153 -5617106 + GA-rich Low_complexity Low_complexity 2 39 0 6 1705 315 0 0 0 chr5 146920358 146920393 -5616866 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1705 988 226 26 127 chr5 146920869 146921285 -5615974 - ORR1D1 LTR MaLR 0 374 1 6 1705 483 298 64 39 chr5 146922070 146922476 -5614783 - RLTR15 LTR ERVK -68 291 3 6 1705 255 51 0 0 chr5 146922664 146922703 -5614556 - L1_Mus2 LINE L1 0 6566 6528 6 1705 1209 100 44 0 chr5 146922722 146922902 -5614357 - B2_Mm2 SINE B2 -4 191 4 6 1705 27 29 0 0 chr5 146922924 146922958 -5614301 + AT_rich Low_complexity Low_complexity 1 34 0 6 1705 1782 179 90 11 chr5 146923119 146923475 -5613784 + ORR1C2 LTR MaLR 1 384 0 6 1705 2622 110 27 22 chr5 146925064 146925465 -5611794 + RLTR9D LTR ERVK 1 403 0 6 1705 1174 248 61 19 chr5 146925567 146925929 -5611330 + MTE2a LTR MaLR 1 377 -2 6 1705 1209 256 123 51 chr5 146926055 146926470 -5610789 - RMER19C LTR ERVK -46 565 121 6 1705 541 323 57 0 chr5 146926578 146926736 -5610523 + B4A SINE B4 64 230 -62 6 1705 513 296 31 56 chr5 146926739 146926900 -5610359 + RSINE1 SINE B4 6 162 -3 6 1705 279 265 0 14 chr5 146926925 146926994 -5610265 + B4A SINE B4 221 288 -4 6 1705 1057 268 105 10 chr5 146927161 146927550 -5609709 + Lx8 LINE L1 7047 7472 -1 6 1705 1671 319 51 35 chr5 146927648 146928457 -5608802 + Lx7 LINE L1 6479 7300 -396 6 1705 3214 134 35 23 chr5 146928614 146928872 -5608387 + L1Md_F2 LINE L1 4977 5232 -651 6 1705 450 0 0 0 chr5 146928872 146928922 -5608337 + (TC)n Simple_repeat Simple_repeat 2 51 0 6 1705 213 121 0 0 chr5 146928926 146928959 -5608300 + (CA)n Simple_repeat Simple_repeat 2 34 0 6 1705 3214 134 35 23 chr5 146928959 146929298 -5607961 + L1Md_F2 LINE L1 5233 5576 -307 6 1705 7513 68 3 9 chr5 146929299 146930286 -5606973 + L1Md_F2 LINE L1 5588 6568 -14 6 1705 5237 93 28 1 chr5 146930295 146931047 -5606212 + L1_Mus3 LINE L1 5862 6633 -5 6 213 7973 121 28 1 chr5 146931065 146932369 -5604890 - Lx3_Mus LINE L1 -11 6998 5660 6 1706 26 30 0 0 chr5 146933764 146933797 -5603462 + AT_rich Low_complexity Low_complexity 1 33 0 6 1706 780 308 15 5 chr5 146934318 146934520 -5602739 - B3 SINE B2 -3 213 10 6 1706 720 303 55 5 chr5 146934663 146934862 -5602397 - ID_B1 SINE B4 -7 217 9 6 1706 21761 76 6 1 chr5 146935250 146939251 -5598008 + L1Md_F LINE L1 331 4349 -1534 6 1706 4889 73 1 22 chr5 146939253 146939923 -5597336 + L1Md_F2 LINE L1 5926 6581 -1 6 1706 944 162 57 28 chr5 146939926 146940173 -5597086 - RLTR45-int LTR ERVK -2320 4924 4671 6 1706 3156 49 0 0 chr5 146940160 146940567 -5596692 - ETnERV2-int LTR ERVK -1644 5762 5356 6 1706 1660 15 0 0 chr5 146940577 146940773 -5596486 + L1Md_T LINE L1 5391 5586 -297 6 1706 9038 5 0 0 chr5 146940773 146941769 -5595490 + L1Md_T LINE L1 5587 6582 0 6 1706 26 64 0 0 chr5 146941809 146941856 -5595403 + AT_rich Low_complexity Low_complexity 1 47 0 6 1706 9686 145 38 24 chr5 146941858 146943869 -5593390 - ETnERV2-int LTR ERVK -2727 4679 2935 6 1706 498 94 268 10 chr5 146943884 146943981 -5593278 - RMER16-int LTR ERVK -4196 1210 1089 6 1706 2105 171 152 36 chr5 146943986 146944485 -5592774 - RMER16-int LTR ERVK -4587 819 263 6 1706 612 0 0 0 chr5 146944485 146944553 -5592706 + (TC)n Simple_repeat Simple_repeat 1 68 0 6 1706 360 269 62 46 chr5 146944692 146944887 -5592372 - RMER16-int LTR ERVK -6878 366 169 6 1706 648 167 10 0 chr5 146945460 146945562 -5591697 - ETnERV2-int LTR ERVK -234 7172 7070 6 1706 422 53 0 0 chr5 146945564 146945621 -5591638 + RLTR26 LTR ERVK 586 642 0 6 1706 13117 88 50 7 chr5 146945621 146947423 -5589836 + MERVK26-int LTR ERVK 1 1880 -5039 6 1706 478 250 35 71 chr5 146947427 146947625 -5589634 + RMER13B LTR ERVK 718 908 0 6 1706 844 199 23 0 chr5 146947649 146947825 -5589434 + RMER17A-int LTR ERVK 1354 1533 -195 6 1706 16606 89 14 9 chr5 146947837 146950664 -5586595 - L1VL4 LINE L1 -281 3278 440 6 1706 646 200 0 8 chr5 146950659 146950780 -5586479 - L1VL4 LINE L1 -5997 305 186 6 1706 2508 131 11 67 chr5 146950780 146951154 -5586105 + MT2B LTR ERVL 177 551 -50 6 1706 3173 128 14 10 chr5 146951154 146951658 -5585601 + RLTR19C LTR ERVK 1 506 0 6 1706 2508 131 11 67 chr5 146951658 146951732 -5585527 + MT2B LTR ERVL 552 600 -1 6 1706 766 308 50 4 chr5 146951749 146952010 -5585249 - Lx8 LINE L1 -807 6666 6394 6 1706 264 59 0 0 chr5 146952011 146952045 -5585214 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 6 1706 449 284 21 43 chr5 146952045 146952185 -5585074 - B3 SINE B2 -15 201 65 6 1706 549 270 106 67 chr5 146952228 146952557 -5584702 - Lx8 LINE L1 -1075 6398 6057 6 1706 1640 194 109 6 chr5 146952569 146952917 -5584342 + ORR1C2 LTR MaLR 1 384 0 6 1706 180 0 0 0 chr5 146953042 146953062 -5584197 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6 1706 1392 253 77 13 chr5 146953352 146953728 -5583531 + MTD LTR MaLR 6 405 -14 6 1706 399 159 0 42 chr5 146954241 146954313 -5582946 + B1_Mus1 SINE Alu 2 70 -78 6 1706 907 239 25 10 chr5 146954380 146954583 -5582676 - B3 SINE B2 -10 206 1 6 1706 219 261 101 0 chr5 146955421 146955490 -5581769 + BC1_Mm scRNA scRNA 28 103 -49 6 1706 827 177 7 13 chr5 146955538 146955687 -5581572 + B1_Mur4 SINE Alu 2 149 -1 6 1706 25 51 0 0 chr5 146955791 146955830 -5581429 + AT_rich Low_complexity Low_complexity 1 39 0 6 1706 258 32 0 0 chr5 146955840 146955871 -5581388 + (TC)n Simple_repeat Simple_repeat 2 32 0 7 1706 918 63 0 0 chr5 146955871 146955996 -5581263 + (TG)n Simple_repeat Simple_repeat 1 126 0 7 1706 4304 143 33 7 chr5 146956406 146957103 -5580156 + Lx4A LINE L1 6343 7057 -1 7 1706 733 230 0 28 chr5 146957112 146957255 -5580004 + RSINE1 SINE B4 5 143 -22 7 1706 337 196 53 0 chr5 146957240 146957328 -5579931 - PB1D9 SINE Alu -50 99 5 7 1706 441 286 0 19 chr5 146957407 146957514 -5579745 + B3A SINE B2 1 105 -93 7 1706 231 325 17 108 chr5 146957514 146957583 -5579676 + B4A SINE B4 1 160 -132 7 1706 901 273 27 12 chr5 146957925 146958181 -5579078 + RMER5 LTR ERV1 235 494 -40 7 1706 245 218 58 29 chr5 146958764 146958868 -5578391 + (TTAA)n Simple_repeat Simple_repeat 4 110 0 7 1706 200 204 81 58 chr5 146958953 146959125 -5578134 + (TTAA)n Simple_repeat Simple_repeat 4 179 0 7 1706 306 169 115 19 chr5 146959150 146959307 -5577952 + (TTAA)n Simple_repeat Simple_repeat 1 172 0 7 1706 248 188 79 43 chr5 146959352 146959491 -5577768 + (TTAA)n Simple_repeat Simple_repeat 3 146 0 7 1706 408 88 0 0 chr5 146959514 146959571 -5577688 + (TTA)n Simple_repeat Simple_repeat 2 58 0 7 1706 880 194 61 0 chr5 146959576 146959756 -5577503 + B3 SINE B2 6 196 -20 7 1706 819 184 0 26 chr5 146960114 146960265 -5576994 + B1_Mur1 SINE Alu 3 149 0 7 1706 2236 145 19 14 chr5 146960885 146961256 -5576003 - RLTR14 LTR ERV1 -9 373 1 7 1706 724 204 126 65 chr5 146961323 146961569 -5575690 + RLTR20C LTR ERVK 52 312 -222 7 1706 567 181 138 48 chr5 146961563 146961708 -5575551 + RLTR20C LTR ERVK 421 578 0 7 1706 863 149 0 0 chr5 146962364 146962498 -5574761 + B1_Mus1 SINE Alu 1 134 -14 7 1706 925 54 282 0 chr5 146962500 146962649 -5574610 + B2_Mm2 SINE B2 1 191 -4 7 1706 376 35 35 0 chr5 146962779 146962837 -5574422 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 7 1706 29 0 0 0 chr5 146962859 146962888 -5574371 + AT_rich Low_complexity Low_complexity 1 29 0 7 1706 1182 230 25 13 chr5 146962901 146963350 -5573909 + MT2A LTR ERVL 1 489 -44 7 1706 885 110 0 0 chr5 146963350 146963504 -5573755 + (TG)n Simple_repeat Simple_repeat 2 155 0 7 1706 886 293 11 4 chr5 146963504 146963546 -5573713 + MT2A LTR ERVL 490 533 0 7 1706 866 254 21 16 chr5 146963547 146963739 -5573520 - B3 SINE B2 -22 194 2 7 1706 1700 204 32 40 chr5 146963779 146964156 -5573103 + ORR1D1 LTR MaLR 1 374 0 7 1706 3862 30 5 0 chr5 146964267 146964701 -5572558 - RLTR10C LTR ERVK 0 436 1 7 1706 4486 12 0 12 chr5 146964734 146965233 -5572026 + MT2_Mm LTR ERVL 1 493 0 7 1706 340 279 85 62 chr5 146965319 146965495 -5571764 - L1MEe LINE L1 -4033 821 642 7 1706 422 336 102 12 chr5 146965572 146965816 -5571443 - RMER15 LTR ERVL -65 510 245 7 1706 538 244 15 15 chr5 146966206 146966343 -5570916 - URR1B DNA MER1_type -1 224 88 7 1706 323 344 31 0 chr5 146966380 146966476 -5570783 + B1F1 SINE Alu 36 134 -15 7 1706 1065 60 0 0 chr5 146966616 146966766 -5570493 + (TG)n Simple_repeat Simple_repeat 1 150 0 7 1706 1903 142 56 0 chr5 146966768 146967070 -5570189 + ORR1A2 LTR MaLR 1 319 -8 7 1706 216 235 0 0 chr5 146967077 146967145 -5570114 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1706 1656 224 79 11 chr5 146967362 146967741 -5569518 - MTD LTR MaLR -14 405 1 7 1706 287 308 55 9 chr5 146967741 146967844 -5569415 - B4A SINE B4 -175 117 9 7 1706 262 259 0 0 chr5 146972606 146972664 -5564595 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1706 701 245 68 0 chr5 146973411 146973603 -5563656 - B3 SINE B2 -10 206 2 7 1706 264 298 121 71 chr5 146975182 146975323 -5561936 + B1_Mur2 SINE Alu 1 148 -1 7 1706 384 184 11 33 chr5 146975843 146975933 -5561326 - RLTR12A LTR ERVK 0 568 481 7 1706 870 293 23 0 chr5 146975931 146976146 -5561113 + MT2A LTR ERVL 246 465 -68 7 1706 458 159 0 11 chr5 146976169 146976258 -5561001 + (TG)n Simple_repeat Simple_repeat 2 89 0 7 1706 801 288 11 16 chr5 146976311 146976498 -5560761 - B3 SINE B2 -29 187 2 7 1706 1563 223 38 30 chr5 146976537 146976902 -5560357 + ORR1D1 LTR MaLR 1 368 -6 7 1706 291 239 68 68 chr5 146977133 146977281 -5559978 + RMER17A LTR ERVK 356 503 -248 7 1706 250 242 0 16 chr5 146977271 146977334 -5559925 - ORR1E LTR MaLR -297 62 1 7 1706 383 316 99 18 chr5 146977338 146977560 -5559699 - RMER15 LTR ERVL -91 484 245 7 1706 25 51 0 0 chr5 146979560 146979599 -5557660 + AT_rich Low_complexity Low_complexity 1 39 0 7 1706 235 276 0 0 chr5 146982787 146982845 -5554414 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1706 802 225 68 0 chr5 146983566 146983757 -5553502 - B3 SINE B2 -4 212 9 7 1706 281 247 116 99 chr5 146985354 146985495 -5551764 + B1F1 SINE Alu 1 148 -1 7 1706 2129 108 3 22 chr5 146986014 146986336 -5550923 - IAPLTR2b LTR ERVK -11 316 1 7 1706 4747 97 15 22 chr5 146986336 146987010 -5550249 - IAPEz-int LTR ERVK 0 6481 5813 7 1706 24392 142 37 17 chr5 146987093 146992075 -5545184 - IAPEz-int LTR ERVK -1233 5588 1 7 1706 2109 108 6 19 chr5 146992087 146992407 -5544852 - IAPLTR2b LTR ERVK -11 316 1 7 1706 1316 231 103 55 chr5 146992426 146992967 -5544292 - RLTR12A LTR ERVK 0 568 2 7 1706 699 232 28 102 chr5 146993170 146993386 -5543873 + MTD LTR MaLR 1 200 -219 7 1706 180 241 0 0 chr5 146997461 146997519 -5539740 + (CA)n Simple_repeat Simple_repeat 1 58 0 7 1706 885 208 68 0 chr5 146998247 146998439 -5538820 - B3 SINE B2 -4 212 8 7 1706 321 258 122 50 chr5 147000043 147000182 -5537077 + B1_Mur2 SINE Alu 1 149 0 1 1706 1330 252 65 75 chr5 147000713 147000835 -5536424 - RLTR12A LTR ERVK 0 568 444 2 1706 1150 88 0 0 chr5 147000835 147000983 -5536276 + B1_Mus1 SINE Alu 1 148 0 3 1706 1330 252 65 75 chr5 147000983 147001434 -5535825 - RLTR12A LTR ERVK -125 443 1 2 1706 1483 218 60 51 chr5 147001639 147002054 -5535205 + MTD LTR MaLR 1 419 0 4 1706 563 227 88 29 chr5 147002533 147002737 -5534522 - B3 SINE B2 0 216 1 5 1706 1628 247 51 38 chr5 147003048 147003520 -5533739 - RMER19C LTR ERVK 0 611 134 6 1706 1083 229 87 15 chr5 147003541 147003873 -5533386 - RLTR20A2 LTR ERVK -222 356 1 7 1706 839 164 21 0 chr5 147003976 147004116 -5533143 + B1_Mur2 SINE Alu 2 144 -5 8 1706 975 246 56 109 chr5 147005294 147005814 -5531445 - RLTR31_Mur LTR ERVK -60 493 96 9 1706 287 67 44 0 chr5 147006151 147006196 -5531063 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 1 1706 624 213 14 21 chr5 147007056 147007200 -5530059 + B3 SINE B2 73 215 -1 1 1706 505 250 57 42 chr5 147007287 147007479 -5529780 - B3A SINE B2 -3 195 1 1 1706 345 47 0 0 chr5 147007487 147007530 -5529729 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1 1706 281 238 0 87 chr5 147007530 147007622 -5529637 - PB1D9 SINE Alu -11 109 26 1 1706 1274 34 0 0 chr5 147007676 147007823 -5529436 + B1_Mus2 SINE Alu 1 147 0 1 1706 735 88 8 42 chr5 147007878 147007997 -5529262 + B2_Mm2 SINE B2 16 130 -65 1 1706 1073 191 0 45 chr5 147007982 147008202 -5529057 - MTB_Mm LTR MaLR -197 210 1 1 1706 823 231 81 0 chr5 147008202 147008388 -5528871 - B3 SINE B2 -14 202 2 1 1706 372 324 81 29 chr5 147009614 147009922 -5527337 - L1MB7 LINE L1 -3 6181 5858 1 1706 180 97 0 0 chr5 147010155 147010186 -5527073 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1706 307 248 139 67 chr5 147010474 147010670 -5526589 - L1MB7 LINE L1 -919 5227 5017 1 1706 649 193 63 21 chr5 147010670 147010813 -5526446 - B1_Mur2 SINE Alu 0 149 1 2 1706 307 248 139 67 chr5 147010813 147010854 -5526405 - L1MB7 LINE L1 -1130 5016 4973 1 1706 798 161 15 0 chr5 147010884 147011014 -5526245 + B1_Mur4 SINE Alu 7 138 -12 2 1706 621 0 0 0 chr5 147011014 147011083 -5526176 + (TAAAA)n Simple_repeat Simple_repeat 3 71 0 2 1706 983 265 128 10 chr5 147011096 147011401 -5525858 + Lx8 LINE L1 6995 7335 -138 2 1706 216 0 0 0 chr5 147012035 147012059 -5525200 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1706 1238 54 0 0 chr5 147012059 147012206 -5525053 - B1_Mus2 SINE Alu 0 147 1 2 1706 758 230 36 41 chr5 147012275 147012470 -5524789 - B3A SINE B2 -3 195 2 2 1706 2034 107 28 112 chr5 147012720 147013077 -5524182 - ORR1A4 LTR MaLR 0 329 3 2 1706 1159 74 0 13 chr5 147013522 147013672 -5523587 - B1_Mus1 SINE Alu 0 148 1 2 1706 1274 98 43 0 chr5 147014847 147015031 -5522228 - B2_Mm2 SINE B2 -2 193 2 3 1706 350 237 50 20 chr5 147015456 147015555 -5521704 - MTEb LTR MaLR -9 370 269 3 1706 898 284 124 10 chr5 147015592 147015898 -5521361 - Lx8 LINE L1 -138 7335 6995 3 1706 249 172 108 15 chr5 147015951 147016016 -5521243 + MT2B LTR ERVL 62 132 -469 3 1706 831 221 116 66 chr5 147016046 147016306 -5520953 + MT2B LTR ERVL 100 545 -56 3 1706 189 0 0 0 chr5 147016306 147016327 -5520932 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1706 831 219 114 70 chr5 147016327 147016387 -5520872 + MT2B LTR ERVL 546 594 -7 3 1706 592 197 55 8 chr5 147016657 147016785 -5520474 + B1_Mus1 SINE Alu 15 148 0 3 1706 417 200 130 28 chr5 147016976 147017084 -5520175 + B3 SINE B2 97 215 -1 3 1706 1563 188 25 37 chr5 147017606 147017959 -5519300 - ORR1C2 LTR MaLR -35 349 1 3 1706 2580 113 35 43 chr5 147018115 147018538 -5518721 + RLTR9B2 LTR ERVK 1 420 0 3 1706 234 368 0 17 chr5 147018850 147018969 -5518290 + PB1D10 SINE Alu 1 117 0 3 1706 204 40 0 0 chr5 147018990 147019015 -5518244 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1706 934 115 0 14 chr5 147019074 147019215 -5518044 - B1_Mus1 SINE Alu -9 139 1 4 1706 905 248 74 16 chr5 147019576 147019834 -5517425 - B4A SINE B4 -18 274 2 4 1706 1094 75 0 13 chr5 147019941 147020090 -5517169 + B1_Mus1 SINE Alu 2 148 0 4 1706 816 51 246 0 chr5 147020271 147020389 -5516870 - B1_Mm SINE Alu 0 147 1 4 1706 22 0 0 0 chr5 147021582 147021604 -5515655 + AT_rich Low_complexity Low_complexity 1 22 0 4 1706 256 250 53 106 chr5 147023701 147023795 -5513464 + RSINE1 SINE B4 29 117 -48 4 1706 342 0 0 0 chr5 147023795 147023833 -5513426 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1706 237 94 18 54 chr5 147024226 147024282 -5512977 + A-rich Low_complexity Low_complexity 3 56 0 4 1706 1103 296 143 35 chr5 147024506 147024890 -5512369 + L1_Mur3 LINE L1 1211 1587 -4293 4 1706 1146 89 0 0 chr5 147024890 147025036 -5512223 - B1_Mus2 SINE Alu 0 147 2 5 1706 1103 296 143 35 chr5 147025036 147025676 -5511583 + L1_Mur3 LINE L1 1588 2334 -3546 4 1706 992 119 28 0 chr5 147025676 147025819 -5511440 + B1_Mus1 SINE Alu 2 148 0 5 1706 1103 296 143 35 chr5 147025819 147025925 -5511334 + L1_Mur3 LINE L1 2335 2463 -3417 4 1706 1232 78 5 27 chr5 147025925 147026109 -5511150 + B2_Mm2 SINE B2 9 188 -7 5 1706 844 271 100 8 chr5 147026111 147026491 -5510768 + L1_Mur3 LINE L1 2480 2894 -2986 4 1706 708 28 170 0 chr5 147026526 147026632 -5510627 + B1_Mus1 SINE Alu 25 148 0 5 1706 26 0 0 0 chr5 147026658 147026684 -5510575 + AT_rich Low_complexity Low_complexity 1 26 0 5 1706 323 250 65 32 chr5 147026715 147026839 -5510420 + MusHAL1 LINE L1 2293 2420 -292 5 1706 25 0 0 0 chr5 147027790 147027815 -5509444 + AT_rich Low_complexity Low_complexity 1 25 0 5 1706 523 283 65 13 chr5 147027857 147028011 -5509248 + RSINE1 SINE B4 2 163 -2 5 1706 396 149 0 0 chr5 147028012 147028106 -5509153 + (CA)n Simple_repeat Simple_repeat 2 95 0 5 1706 902 42 0 0 chr5 147028185 147028303 -5508956 + B2_Mm1a SINE B2 70 187 -6 5 1706 1518 37 26 11 chr5 147028327 147028517 -5508742 + B2_Mm2 SINE B2 2 194 -1 6 1706 259 281 15 15 chr5 147029152 147029217 -5508042 + ID4_ SINE ID 2 66 -17 6 1706 345 200 0 0 chr5 147029752 147029817 -5507442 - B1F1 SINE Alu -2 147 83 6 1706 23 0 0 0 chr5 147030614 147030637 -5506622 + AT_rich Low_complexity Low_complexity 1 23 0 6 1706 958 96 73 0 chr5 147030637 147030773 -5506486 + B1_Mus1 SINE Alu 1 146 -2 6 1706 250 26 0 49 chr5 147030773 147030814 -5506445 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6 1706 474 185 50 14 chr5 147030816 147030931 -5506328 + B1_Mur4 SINE Alu 1 125 -2 6 1706 2172 117 126 14 chr5 147031001 147031365 -5505894 - MTB_Mm LTR MaLR 0 407 3 6 1706 541 259 18 0 chr5 147031365 147031477 -5505782 + B1_Mur3 SINE Alu 1 114 -35 6 1706 234 0 0 0 chr5 147031497 147031523 -5505736 + (CA)n Simple_repeat Simple_repeat 1 26 0 6 1706 1160 50 0 0 chr5 147031688 147031827 -5505432 - B1_Mus2 SINE Alu -8 139 1 7 1706 245 180 0 0 chr5 147033562 147033612 -5503647 - ID_B1 SINE B4 0 224 175 7 1706 235 203 45 30 chr5 147033612 147033627 -5503632 - PB1D10 SINE Alu -1 115 50 7 1706 2374 119 58 29 chr5 147034140 147034521 -5502738 + ORR1B1 LTR MaLR 1 392 -2 7 1706 396 307 113 41 chr5 147034728 147034949 -5502310 + RMER5 LTR ERV1 86 322 -212 7 1706 327 85 0 0 chr5 147034965 147035012 -5502247 + (TCCC)n Simple_repeat Simple_repeat 1 47 0 7 1706 722 193 50 0 chr5 147035012 147035152 -5502107 - B1_Mus2 SINE Alu 0 147 1 7 1706 576 273 64 40 chr5 147035153 147035222 -5502037 + RMER5 LTR ERV1 326 392 -142 7 1706 1136 68 0 20 chr5 147035222 147035372 -5501887 + B1_Mus1 SINE Alu 1 147 -1 7 1706 576 273 64 40 chr5 147035372 147035504 -5501755 + RMER5 LTR ERV1 393 532 -2 7 1706 216 0 0 0 chr5 147036110 147036134 -5501125 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1706 669 161 0 24 chr5 147036322 147036449 -5500810 - B1_Mus2 SINE Alu -11 136 13 7 1706 1343 98 5 40 chr5 147036518 147036719 -5500540 - B2_Mm2 SINE B2 0 195 2 8 1706 617 169 14 68 chr5 147036815 147036961 -5500298 + B1_Mus2 SINE Alu 9 146 -1 8 1706 309 151 0 0 chr5 147036973 147037026 -5500233 + A-rich Low_complexity Low_complexity 1 53 0 8 1706 724 285 40 0 chr5 147037092 147037292 -5499967 - B3 SINE B2 -7 209 2 8 1706 351 113 0 0 chr5 147037329 147037391 -5499868 + (TC)n Simple_repeat Simple_repeat 2 63 0 8 1706 396 0 0 0 chr5 147037391 147037435 -5499824 + (CA)n Simple_repeat Simple_repeat 2 45 0 8 1706 668 213 8 0 chr5 147037436 147037563 -5499696 - B1_Mur2 SINE Alu -17 132 5 8 1706 368 281 74 0 chr5 147037592 147037727 -5499532 - MTEb LTR MaLR 0 379 235 8 1706 359 175 222 26 chr5 147037778 147037895 -5499364 - B1_Mus1 SINE Alu -7 141 2 8 1706 1691 284 88 5 chr5 147037912 147037980 -5499279 - MTE2b-int LTR MaLR -924 656 589 8 1706 1920 133 68 0 chr5 147037980 147038288 -5498971 + ORR1A4 LTR MaLR 1 329 0 9 1706 1691 284 88 5 chr5 147038288 147038825 -5498434 - MTE2b-int LTR MaLR -992 588 1 8 1706 304 230 200 0 chr5 147038830 147038930 -5498329 - MTE2b LTR MaLR -5 374 255 8 1706 410 250 83 33 chr5 147038931 147039051 -5498208 + RMER20B LTR ERVK 1 126 -501 9 1706 3921 165 46 135 chr5 147039054 147040085 -5497174 + RMER21A LTR ERV1 1 939 -8 9 1706 283 162 66 26 chr5 147040104 147040180 -5497079 + Lx9 LINE L1 7565 7643 -1 9 1706 329 252 40 163 chr5 147040345 147040743 -5496516 + RMER17C LTR ERVK 43 391 -19 9 1706 831 153 31 19 chr5 147040737 147040897 -5496362 + ORR1B2 LTR MaLR 66 227 -140 9 1706 180 0 0 0 chr5 147041022 147041042 -5496217 + (TTA)n Simple_repeat Simple_repeat 2 21 0 9 1706 1158 50 0 21 chr5 147041047 147041191 -5496068 - B1_Mus1 SINE Alu -7 141 1 9 1706 24 67 0 0 chr5 147041191 147041236 -5496023 + AT_rich Low_complexity Low_complexity 1 45 0 9 1706 468 275 23 64 chr5 147041261 147041432 -5495827 - B3 SINE B2 -1 215 52 9 1706 1081 75 0 7 chr5 147041546 147041693 -5495566 - B1_Mus2 SINE Alu -1 146 1 1 1706 259 314 0 64 chr5 147041768 147041847 -5495412 - B4A SINE B4 -85 207 135 1 1706 266 0 0 29 chr5 147041847 147041882 -5495377 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1 1706 259 314 0 64 chr5 147041882 147041911 -5495348 - B4A SINE B4 -158 134 106 1 1706 452 221 67 0 chr5 147041963 147042067 -5495192 + MTD LTR MaLR 297 407 -12 1 1706 21 36 0 0 chr5 147042132 147042160 -5495099 + GC_rich Low_complexity Low_complexity 1 28 0 1 1706 377 95 0 16 chr5 147042757 147042821 -5494438 + (TCC)n Simple_repeat Simple_repeat 2 64 0 1 1706 21 0 0 0 chr5 147043110 147043131 -5494128 + GC_rich Low_complexity Low_complexity 1 21 0 1 1706 1135 82 0 0 chr5 147045532 147045679 -5491580 - B1_Mus2 SINE Alu 0 147 1 1 1706 297 0 0 0 chr5 147046209 147046242 -5491017 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1706 448 170 105 11 chr5 147046243 147046338 -5490921 - PB1D9 SINE Alu -6 114 11 1 1706 243 247 164 0 chr5 147046623 147046696 -5490563 + PB1D10 SINE Alu 9 93 -24 1 1706 339 25 0 0 chr5 147046713 147046753 -5490506 + (TG)n Simple_repeat Simple_repeat 2 41 0 1 1706 234 0 0 0 chr5 147046864 147046890 -5490369 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1 1706 359 156 324 18 chr5 147046890 147046994 -5490265 - B1_Mur2 SINE Alu -7 142 4 1 1706 373 213 105 53 chr5 147047355 147047469 -5489790 - PB1D7 SINE Alu 0 120 1 1 1706 320 138 17 17 chr5 147047517 147047576 -5489683 - ERVL-B4-int LTR ERVL -2517 3197 3139 1 1706 466 191 34 0 chr5 147047578 147047667 -5489592 - B1F SINE Alu -26 123 32 1 1706 507 194 71 0 chr5 147047721 147047819 -5489440 - B3 SINE B2 -109 107 3 1 1706 288 0 0 0 chr5 147049002 147049034 -5488225 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1706 473 208 118 59 chr5 147049036 147049189 -5488070 - B3 SINE B2 -54 162 1 1 1706 413 244 121 9 chr5 147049277 147049393 -5487866 + RSINE1 SINE B4 3 131 -34 1 1706 306 0 0 0 chr5 147049404 147049438 -5487821 + (CA)n Simple_repeat Simple_repeat 1 34 0 1 1706 272 263 83 25 chr5 147049579 147049700 -5487559 - Lx5 LINE L1 -77 6107 5980 1 1706 642 238 57 6 chr5 147049706 147049884 -5487375 - Lx5 LINE L1 -1263 5787 5618 1 1706 291 54 0 0 chr5 147051610 147051647 -5485612 + (TCC)n Simple_repeat Simple_repeat 3 39 0 1 1706 189 0 0 0 chr5 147051646 147051667 -5485592 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1706 791 94 165 0 chr5 147051667 147051794 -5485465 - B1_Mur4 SINE Alu 0 150 3 1 1706 252 256 29 118 chr5 147051801 147051903 -5485356 - PB1D10 SINE Alu -1 116 24 1 1706 626 175 350 0 chr5 147052250 147052410 -5484849 + B3 SINE B2 1 216 0 1 1706 27 0 0 0 chr5 147052689 147052716 -5484543 + AT_rich Low_complexity Low_complexity 1 27 0 1 1706 207 0 0 0 chr5 147052764 147052787 -5484472 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1 1706 1010 104 7 7 chr5 147052787 147052942 -5484317 - B2_Mm1a SINE B2 -37 156 2 1 1706 328 305 0 9 chr5 147053169 147053275 -5483984 + RMER15 LTR ERVL 428 532 -43 1 1706 336 103 0 0 chr5 147053471 147053529 -5483730 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 1 1706 1211 53 12 0 chr5 147053534 147053703 -5483556 - B2_Mm1t SINE B2 -22 171 1 1 1706 692 277 68 29 chr5 147054737 147055016 -5482243 + RMER15-int LTR ERVL 1203 1492 -3507 1 1706 1285 215 87 39 chr5 147055021 147055448 -5481811 + Lx2B LINE L1 6509 7058 0 1 1706 1291 96 26 11 chr5 147055516 147055705 -5481554 + B2_Mm2 SINE B2 1 192 -3 1 1706 476 165 43 21 chr5 147055706 147055799 -5481460 + RMER15-int LTR ERVL 1514 1608 -3391 1 1706 842 72 159 8 chr5 147055813 147055939 -5481320 + B1_Mus2 SINE Alu 1 145 -2 1 1706 283 158 215 38 chr5 147056177 147056256 -5481003 + RMER15-int LTR ERVL 1712 1804 -3195 1 1706 303 243 42 14 chr5 147056385 147056456 -5480803 + RSINE1 SINE B4 93 165 0 1 1706 25 31 0 0 chr5 147056470 147056502 -5480757 + AT_rich Low_complexity Low_complexity 1 32 0 1 1706 23 54 0 0 chr5 147056766 147056803 -5480456 + AT_rich Low_complexity Low_complexity 1 37 0 1 1706 1441 70 0 16 chr5 147057124 147057314 -5479945 + B2_Mm2 SINE B2 1 187 -8 1 1706 248 360 50 7 chr5 147057575 147057715 -5479544 - ID_B1 SINE B4 -70 154 9 1 1706 480 271 106 34 chr5 147058600 147058868 -5478391 - L1MA4 LINE L1 -279 6024 5725 1 1706 268 307 80 100 chr5 147059349 147059599 -5477660 - L1MB8 LINE L1 -54 6124 5880 1 1706 228 310 52 17 chr5 147059627 147059742 -5477517 - L1M3 LINE L1 -396 5787 5669 1 1706 3601 240 72 45 chr5 147059774 147059868 -5477391 + MMAR1 DNA Mariner 4 59 -1227 1 1706 1236 47 0 0 chr5 147059868 147060016 -5477243 - B1_Mus1 SINE Alu 0 148 1 1 1706 3601 240 72 45 chr5 147060016 147061021 -5476238 + MMAR1 DNA Mariner 60 1132 -154 1 1706 379 252 68 15 chr5 147061645 147061778 -5475481 - MTE2b LTR MaLR 0 379 240 1 1707 273 163 0 0 chr5 147063008 147063057 -5474202 + B1_Mur4 SINE Alu 95 143 -7 1 1707 362 365 11 5 chr5 147063542 147063732 -5473527 - MER58C DNA MER1_type 0 215 25 1 1707 863 202 64 20 chr5 147063765 147063967 -5473292 + URR1B DNA MER1_type 1 211 -14 1 1707 620 289 50 50 chr5 147063968 147064230 -5473029 - MT2A LTR ERVL -124 409 148 1 1707 574 258 65 21 chr5 147064470 147064656 -5472603 + B3A SINE B2 3 196 -2 1 1707 3843 158 179 10 chr5 147064993 147065765 -5471494 + RMER19B LTR ERVK 1 902 0 1 1707 1092 216 129 7 chr5 147066436 147066841 -5470418 + RMER5 LTR ERV1 19 519 -15 1 1707 729 235 64 21 chr5 147067933 147068077 -5469182 - Tigger2b DNA MER2_type -481 245 92 1 1707 1154 68 7 0 chr5 147068077 147068223 -5469036 - B1_Mus1 SINE Alu 0 148 2 1 1707 729 235 64 21 chr5 147068223 147068313 -5468946 - Tigger2b DNA MER2_type -635 91 1 1 1707 564 228 70 8 chr5 147068439 147068567 -5468692 + B1_Mur1 SINE Alu 5 140 -9 1 1707 281 351 19 91 chr5 147068576 147068708 -5468551 + MTD LTR MaLR 50 168 -251 1 1707 648 242 88 22 chr5 147068708 147068890 -5468369 + B3A SINE B2 2 195 -3 1 1707 281 351 19 91 chr5 147068890 147069020 -5468239 + MTD LTR MaLR 169 293 -126 1 1707 335 231 75 28 chr5 147069063 147069170 -5468089 + MTD LTR MaLR 287 398 -21 1 1707 279 0 0 0 chr5 147070275 147070306 -5466953 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1707 884 43 0 0 chr5 147070306 147070421 -5466838 - B1_Mus1 SINE Alu -24 124 10 1 1707 2323 135 95 13 chr5 147070428 147070817 -5466442 - MTC LTR MaLR 0 421 1 1 1707 21 36 0 0 chr5 147071512 147071540 -5465719 + AT_rich Low_complexity Low_complexity 1 28 0 1 1707 338 229 45 76 chr5 147071687 147071819 -5465440 + RSINE1 SINE B4 3 130 -35 1 1707 225 132 0 0 chr5 147072410 147072448 -5464811 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1707 2823 40 18 23 chr5 147072553 147072941 -5464318 + LSU-rRNA_Hsa rRNA rRNA 135 520 -4515 1 1707 225 94 0 0 chr5 147072941 147072973 -5464286 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1707 1025 283 83 19 chr5 147073430 147073959 -5463300 + L1MD LINE L1 4383 4945 -1201 1 1707 429 262 93 23 chr5 147074655 147074784 -5462475 - RSINE1 SINE B4 -24 141 4 1 1707 24 32 0 0 chr5 147074788 147074819 -5462440 + AT_rich Low_complexity Low_complexity 1 31 0 1 1707 379 324 124 54 chr5 147075124 147075305 -5461954 - L1M4 LINE L1 -1285 4861 4649 1 1707 198 71 0 0 chr5 147075305 147075333 -5461926 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 1 1707 379 296 89 73 chr5 147075333 147075743 -5461516 - L1M4 LINE L1 -1498 4648 4233 1 1707 909 60 0 7 chr5 147075795 147075930 -5461329 - L1Md_F2 LINE L1 0 6582 6449 1 1707 312 279 0 0 chr5 147076709 147076788 -5460471 + L1MC5 LINE L1 7716 7794 -167 1 1707 21 36 0 0 chr5 147076974 147077002 -5460257 + AT_rich Low_complexity Low_complexity 1 28 0 1 1707 390 281 140 25 chr5 147077584 147077741 -5459518 + B4 SINE B4 25 199 -93 1 1707 1031 52 0 0 chr5 147077761 147077896 -5459363 + B1_Mus2 SINE Alu 13 147 0 1 1707 189 0 0 0 chr5 147077896 147077917 -5459342 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1707 234 0 0 0 chr5 147077960 147077986 -5459273 + (CA)n Simple_repeat Simple_repeat 2 27 0 1 1707 22 0 0 0 chr5 147078088 147078110 -5459149 + AT_rich Low_complexity Low_complexity 1 22 0 1 1707 294 233 40 46 chr5 147078497 147078620 -5458639 + L1MB4 LINE L1 5789 5902 -278 1 1707 685 215 54 40 chr5 147078657 147078840 -5458419 + B4 SINE B4 59 246 -46 1 1707 480 275 100 7 chr5 147078860 147079010 -5458249 + B3 SINE B2 7 170 -46 1 1707 324 193 119 0 chr5 147079221 147079330 -5457929 + L1MB4 LINE L1 6031 6152 -28 1 1707 201 172 0 33 chr5 147081480 147081508 -5455751 + T-rich Low_complexity Low_complexity 32 58 0 1 1707 1141 62 14 0 chr5 147081508 147081653 -5455606 - B1_Mus2 SINE Alu 0 147 1 1 1707 201 172 0 33 chr5 147081653 147081669 -5455590 + T-rich Low_complexity Low_complexity 17 31 0 1 1707 1742 21 0 0 chr5 147081669 147081862 -5455397 - B2_Mm1a SINE B2 0 193 1 1 1707 201 172 0 33 chr5 147081862 147081876 -5455383 + T-rich Low_complexity Low_complexity 3 16 0 1 1707 345 221 44 0 chr5 147085498 147085566 -5451693 + B1F2 SINE Alu 17 87 -62 1 1707 294 293 40 0 chr5 147085793 147085868 -5451391 - ID4 SINE ID 0 83 6 1 1707 380 303 87 54 chr5 147086131 147086407 -5450852 - MLT2D LTR ERVL 0 414 130 1 1707 519 232 16 8 chr5 147086723 147086849 -5450410 - MLT2D LTR ERVL -266 148 22 1 1707 449 271 85 26 chr5 147086999 147087170 -5450089 + L1MB3 LINE L1 5493 5672 -499 1 1707 556 179 7 7 chr5 147087195 147087347 -5449912 + (TG)n Simple_repeat Simple_repeat 1 152 0 1 1707 309 242 56 83 chr5 147087491 147087599 -5449660 - B4A SINE B4 -140 152 48 1 1707 511 299 18 0 chr5 147087638 147087802 -5449457 + L1MB3 LINE L1 5702 5868 -315 1 1707 766 138 40 68 chr5 147088306 147088454 -5448805 + B1_Mm SINE Alu 3 146 -1 1 1707 890 257 74 16 chr5 147088594 147088851 -5448408 + B4 SINE B4 17 288 -4 1 1707 23 33 0 0 chr5 147089161 147089191 -5448068 + AT_rich Low_complexity Low_complexity 1 30 0 1 1707 1689 21 5 0 chr5 147089777 147089968 -5447291 - B2_Mm1t SINE B2 -1 192 1 1 1707 1306 110 10 25 chr5 147090367 147090563 -5446696 - B2_Mm2 SINE B2 0 195 3 1 1707 654 58 0 0 chr5 147090614 147090701 -5446558 + (CA)n Simple_repeat Simple_repeat 1 87 0 2 1707 244 229 150 40 chr5 147091494 147091594 -5445665 + PB1 SINE Alu 14 124 -3 2 1707 743 243 15 16 chr5 147091703 147091881 -5445378 + B3 SINE B2 1 177 -21 2 1707 568 158 19 38 chr5 147092049 147092154 -5445105 + B1_Mur2 SINE Alu 34 136 -13 2 1707 195 129 0 0 chr5 147092974 147093005 -5444254 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1707 433 310 62 47 chr5 147093045 147093302 -5443957 - B4A SINE B4 -29 263 3 2 1707 420 279 33 0 chr5 147094718 147094840 -5442419 + B1F1 SINE Alu 2 127 -22 2 1707 393 274 10 10 chr5 147094845 147094948 -5442311 + B1_Mur2 SINE Alu 41 143 -6 2 1707 970 168 144 30 chr5 147096004 147096206 -5441053 - URR1B DNA MER1_type 0 225 1 2 1707 788 136 11 9 chr5 147096841 147097000 -5440259 + B2_Mm2 SINE B2 13 172 -21 2 1707 21 71 0 0 chr5 147100369 147100411 -5436848 + AT_rich Low_complexity Low_complexity 1 42 0 2 1707 534 260 31 8 chr5 147100419 147100547 -5436712 + RMER10B LTR ERVL 204 334 -64 2 1707 524 112 0 22 chr5 147100549 147100640 -5436619 + (CATA)n Simple_repeat Simple_repeat 1 89 0 2 1707 1039 112 7 0 chr5 147102805 147102948 -5434311 + B1_Mus1 SINE Alu 5 148 0 2 1707 238 216 0 33 chr5 147104104 147104195 -5433064 + T-rich Low_complexity Low_complexity 2 89 0 2 1707 691 194 14 36 chr5 147105272 147105411 -5431848 + B1_Mur3 SINE Alu 1 136 -13 2 1707 240 35 0 0 chr5 147105411 147105440 -5431819 + (CAGA)n Simple_repeat Simple_repeat 1 29 0 2 1707 21 0 0 0 chr5 147107082 147107103 -5430156 + AT_rich Low_complexity Low_complexity 1 21 0 2 1707 888 208 79 37 chr5 147107392 147107607 -5429652 + ID_B1 SINE B4 1 224 0 2 1707 467 230 103 0 chr5 147107629 147107755 -5429504 + ID_B1 SINE B4 84 222 -2 2 1707 2005 88 29 13 chr5 147108924 147109235 -5428024 - ORR1A2 LTR MaLR -8 319 4 2 1707 1199 74 97 0 chr5 147109271 147109447 -5427812 + B2_Mm2 SINE B2 2 194 -1 2 1707 265 279 0 0 chr5 147109636 147109697 -5427562 + MER5A DNA MER1_type 23 83 -106 2 1707 300 91 0 0 chr5 147109705 147109749 -5427510 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 1707 452 154 290 28 chr5 147109933 147110040 -5427219 + B1_Mus1 SINE Alu 5 139 -9 2 1707 248 286 111 67 chr5 147111651 147111786 -5425473 + B4A SINE B4 1 141 -151 2 1707 181 216 0 26 chr5 147111901 147111939 -5425320 + MIRc SINE MIR 120 156 -112 2 1707 605 271 103 31 chr5 147112318 147112339 -5424920 - B4A SINE B4 -1 291 271 2 1707 468 0 0 0 chr5 147112339 147112391 -5424868 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 1707 605 271 103 31 chr5 147112391 147112563 -5424696 - B4A SINE B4 -22 270 84 2 1707 333 0 0 0 chr5 147112563 147112600 -5424659 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 2 1707 225 0 0 0 chr5 147112607 147112632 -5424627 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2 1707 1190 76 19 0 chr5 147112633 147112790 -5424469 - B2_Mm2 SINE B2 -34 161 2 2 1707 185 262 47 47 chr5 147115041 147115105 -5422154 - MER5A DNA MER1_type -76 113 50 2 1707 546 199 232 12 chr5 147115155 147115323 -5421936 + B3 SINE B2 1 205 -11 2 1707 224 254 113 0 chr5 147115715 147115786 -5421473 + L2a LINE L2 3287 3365 -61 2 1707 255 286 0 0 chr5 147116064 147116120 -5421139 + Tigger5 DNA MER2_type 70 125 -2281 2 1707 213 205 0 0 chr5 147116274 147116313 -5420946 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 1707 381 318 96 81 chr5 147116875 147117210 -5420049 + ORR1E LTR MaLR 16 355 -4 2 1707 35 19 0 19 chr5 147117790 147117808 -5419451 + AT_rich Low_complexity Low_complexity 1 18 0 2 1707 1244 41 0 13 chr5 147117808 147117957 -5419302 + B1_Mus2 SINE Alu 1 147 0 2 1707 35 19 0 19 chr5 147117957 147117991 -5419268 + AT_rich Low_complexity Low_complexity 1 34 0 2 1707 306 106 0 0 chr5 147118477 147118524 -5418735 + (CATA)n Simple_repeat Simple_repeat 3 49 0 2 1707 599 146 227 0 chr5 147118684 147118794 -5418465 + B1_Mm SINE Alu 1 135 -12 2 1707 324 305 117 0 chr5 147118932 147119060 -5418199 + B1_Mur1 SINE Alu 1 143 -6 2 1707 346 118 17 8 chr5 147120175 147120243 -5417016 - B1_Mur3 SINE Alu 0 149 82 2 1707 1670 293 34 9 chr5 147120769 147121217 -5416042 + RCHARR1 DNA MER1_type 4 462 -512 2 1707 983 272 66 19 chr5 147121211 147121529 -5415730 + RCHARR1 DNA MER1_type 641 973 -1 2 1707 461 241 113 100 chr5 147121796 147122102 -5415157 + L1M4c LINE L1 1205 1531 -5373 2 1707 486 248 80 0 chr5 147122177 147122290 -5414969 + RSINE1 SINE B4 44 165 0 2 1707 385 248 97 102 chr5 147122315 147122449 -5414810 + L1M4c LINE L1 1584 1727 -5281 2 1707 1133 141 62 5 chr5 147122449 147122641 -5414618 + B3 SINE B2 1 203 -13 2 1707 385 225 98 108 chr5 147122641 147122739 -5414520 + L1M4c LINE L1 1685 1780 -5554 2 1707 333 198 122 20 chr5 147122791 147122889 -5414370 + L1M4c LINE L1 1918 2025 -4983 2 1707 272 328 8 0 chr5 147122914 147123033 -5414226 + L1M4c LINE L1 2107 2226 -4782 2 1707 203 156 0 43 chr5 147123053 147123100 -5414159 + T-rich Low_complexity Low_complexity 4 48 0 2 1707 375 203 0 39 chr5 147123100 147123177 -5414082 - RSINE1 SINE B4 -44 121 48 2 1707 537 316 103 21 chr5 147123210 147123443 -5413816 + MER2 DNA MER2_type 88 339 -6 2 1707 365 324 43 78 chr5 147123593 147123874 -5413385 + L1M4c LINE L1 4674 4944 -2056 2 1707 432 0 0 0 chr5 147124718 147124766 -5412493 + (CAAAT)n Simple_repeat Simple_repeat 3 50 0 2 1707 501 105 0 0 chr5 147125069 147125155 -5412104 + (TG)n Simple_repeat Simple_repeat 2 87 0 2 1707 678 239 0 21 chr5 147125157 147125298 -5411961 - B3A SINE B2 -59 139 2 2 1707 4295 151 53 21 chr5 147127574 147128323 -5408936 + Lx5 LINE L1 6275 7047 -3 2 1707 670 192 0 31 chr5 147128826 147128955 -5408304 + B3A SINE B2 2 126 -72 2 1707 314 331 67 70 chr5 147128957 147129227 -5408032 - MamRep4096 DNA hAT? -157 269 1 2 1707 388 233 126 0 chr5 147129930 147130033 -5407226 - RSINE1 SINE B4 -46 119 4 2 1707 181 300 0 20 chr5 147130039 147130090 -5407169 + MIRc SINE MIR 106 155 -113 2 1707 1298 144 120 11 chr5 147130379 147130645 -5406614 - RLTR28B LTR ERVL 0 524 230 2 1707 5334 78 67 1 chr5 147130687 147131409 -5405850 - Lx3B LINE L1 -27 6946 6178 2 1707 1466 161 12 0 chr5 147131418 147131660 -5405599 - RLTR28B LTR ERVL -236 245 1 2 1707 316 333 81 41 chr5 147132618 147132815 -5404444 + L1M2 LINE L1 5128 5332 -811 2 1707 204 143 0 23 chr5 147133208 147133251 -5404008 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 2 1707 891 169 0 20 chr5 147133255 147133406 -5403853 - B1_Mur2 SINE Alu 0 149 2 2 1707 27 29 0 0 chr5 147134486 147134520 -5402739 + AT_rich Low_complexity Low_complexity 1 34 0 2 1707 372 128 0 0 chr5 147134699 147134777 -5402482 + (T)n Simple_repeat Simple_repeat 1 78 0 2 1707 606 28 0 0 chr5 147135222 147135294 -5401965 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 1707 423 128 0 0 chr5 147136262 147136348 -5400911 + (GA)n Simple_repeat Simple_repeat 1 86 0 2 1707 750 233 1 56 chr5 147137287 147137485 -5399774 - B3A SINE B2 -32 184 1 2 1707 340 307 68 50 chr5 147137488 147137649 -5399610 - B4A SINE B4 -68 224 61 2 1707 892 288 152 45 chr5 147137680 147138062 -5399197 - RCHARR1 DNA MER1_type -482 492 70 2 1707 387 0 0 0 chr5 147138062 147138105 -5399154 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 1707 573 301 62 36 chr5 147138118 147138479 -5398780 + L1MA8 LINE L1 5802 6171 -141 2 1707 3411 28 13 0 chr5 147138493 147138888 -5398371 + MTB LTR MaLR 1 400 0 2 1707 252 83 67 0 chr5 147139348 147139408 -5397851 + (CAAAAA)n Simple_repeat Simple_repeat 4 67 0 2 1707 250 264 118 53 chr5 147139419 147139571 -5397688 - L1ME4a LINE L1 -23 6101 5940 2 1707 203 167 0 0 chr5 147139676 147139712 -5397547 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 2 1707 315 292 47 144 chr5 147139718 147139974 -5397285 + RLTR21 LTR ERVK 1057 1287 -285 2 1707 1105 207 0 24 chr5 147140174 147140387 -5396872 - B3 SINE B2 -7 209 2 2 1707 967 96 7 0 chr5 147140993 147141129 -5396130 - B1_Mus1 SINE Alu 0 148 12 2 1707 321 208 41 144 chr5 147141219 147141245 -5396014 - L1MB3 LINE L1 -260 5923 5896 2 1707 1349 42 48 0 chr5 147141245 147141413 -5395846 - B2_Mm2 SINE B2 -19 176 1 2 1707 321 208 41 144 chr5 147141413 147141532 -5395727 - L1MB3 LINE L1 -288 5895 5793 2 1707 573 28 0 0 chr5 147141534 147141605 -5395654 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1707 425 290 96 65 chr5 147141741 147141970 -5395289 - MLT1B LTR MaLR -153 237 2 2 1707 1103 83 14 0 chr5 147141994 147142139 -5395120 - B1_Mus2 SINE Alu 0 147 1 2 1707 340 217 60 80 chr5 147142537 147142637 -5394622 - MER20 DNA MER1_type -59 160 63 2 1707 1673 177 56 35 chr5 147142862 147143201 -5394058 - ORR1D1 LTR MaLR 0 374 29 2 1707 234 81 0 0 chr5 147143201 147143238 -5394021 + (TGGG)n Simple_repeat Simple_repeat 1 37 0 2 1707 811 73 203 0 chr5 147143477 147143600 -5393659 - B1_Mus1 SINE Alu 0 148 1 2 1707 358 146 8 21 chr5 147143607 147143707 -5393552 - B2_Mm2 SINE B2 -1 194 60 2 1707 1488 32 0 101 chr5 147143707 147143915 -5393344 - B2_Mm1a SINE B2 -6 187 1 2 1707 244 305 36 62 chr5 147143915 147143974 -5393285 - B3 SINE B2 -157 59 1 2 1707 289 168 45 15 chr5 147144683 147144816 -5392443 + (TG)n Simple_repeat Simple_repeat 1 137 0 2 1707 185 131 16 47 chr5 147144886 147144950 -5392309 + (TATG)n Simple_repeat Simple_repeat 1 62 0 2 1707 274 191 51 7 chr5 147144966 147145103 -5392156 + (TG)n Simple_repeat Simple_repeat 1 143 0 2 1707 436 251 93 84 chr5 147145142 147145444 -5391815 - B4A SINE B4 0 292 6 2 1707 1034 53 46 0 chr5 147145579 147145710 -5391549 + B1_Mus1 SINE Alu 3 139 -9 2 1707 201 74 0 0 chr5 147145710 147145737 -5391522 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1707 506 143 0 11 chr5 147145793 147145885 -5391374 + CT-rich Low_complexity Low_complexity 4 94 0 2 1707 2181 57 85 63 chr5 147146192 147146509 -5390750 + ORR1A2 LTR MaLR 3 326 -1 2 1707 1222 251 64 12 chr5 147146509 147146851 -5390408 + MTEa LTR MaLR 20 379 0 3 1707 243 264 43 54 chr5 147146857 147146949 -5390310 - MTE2b LTR MaLR -14 365 275 3 1707 1119 124 0 0 chr5 147147331 147147508 -5389751 + (TTC)n Simple_repeat Simple_repeat 2 178 0 3 1707 1238 48 0 0 chr5 147147508 147147655 -5389604 - B1_Mus2 SINE Alu 0 147 1 3 1707 282 214 0 14 chr5 147148290 147148361 -5388898 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 1707 601 276 89 68 chr5 147149792 147150084 -5387175 - MamRep137 DNA TcMar? -120 324 27 3 1707 193 244 44 0 chr5 147150428 147150473 -5386786 + L2c LINE L2 3335 3381 -6 3 1707 3738 275 68 88 chr5 147150782 147151770 -5385489 + Lx8 LINE L1 4969 5932 -1541 3 1707 2271 79 30 62 chr5 147151770 147152107 -5385152 + ORR1A2 LTR MaLR 1 326 -1 3 1707 3738 288 85 69 chr5 147152107 147153400 -5383859 + Lx8 LINE L1 5933 7307 -166 3 1707 2485 129 211 23 chr5 147153402 147153523 -5383736 - RMER15 LTR ERVL 0 575 428 3 1707 2151 133 71 3 chr5 147153523 147153675 -5383584 + ORR1C1 LTR MaLR 1 162 -216 3 1707 227 31 0 30 chr5 147153675 147153708 -5383551 + (TCTG)n Simple_repeat Simple_repeat 2 33 0 3 1707 2151 133 71 3 chr5 147153708 147153909 -5383350 + ORR1C1 LTR MaLR 163 376 -2 3 1707 2485 129 211 23 chr5 147153909 147154271 -5382988 - RMER15 LTR ERVL -148 427 1 3 1707 378 0 0 0 chr5 147154295 147154337 -5382922 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 3 1707 1294 117 0 16 chr5 147155257 147155448 -5381811 + RMER4B LTR ERVK 394 581 -4 3 1707 663 297 32 0 chr5 147155817 147156002 -5381257 + ORR1D2 LTR MaLR 1 191 -179 3 1707 2078 138 31 22 chr5 147156564 147156919 -5380340 + ORR1B1 LTR MaLR 1 358 -36 3 1707 870 200 105 0 chr5 147156968 147157158 -5380101 - B3 SINE B2 -6 210 1 3 1707 234 0 0 0 chr5 147157307 147157333 -5379926 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 1707 906 135 0 0 chr5 147157333 147157510 -5379749 + (GA)n Simple_repeat Simple_repeat 1 178 0 3 1707 866 104 43 0 chr5 147157510 147157790 -5379469 + (CAGAGA)n Simple_repeat Simple_repeat 1 292 0 3 1707 783 156 0 0 chr5 147157751 147157930 -5379329 + GA-rich Low_complexity Low_complexity 2 180 0 3 1707 504 179 34 8 chr5 147158172 147158290 -5378969 + B3A SINE B2 3 123 -75 3 1707 1071 286 94 63 chr5 147158430 147159174 -5378085 - Lx8 LINE L1 -1481 5992 5246 3 1707 432 97 0 0 chr5 147159180 147159242 -5378017 + (TG)n Simple_repeat Simple_repeat 2 63 0 3 1707 2199 188 76 56 chr5 147159369 147159571 -5377688 + RLTR20B3 LTR ERVK 1 220 -357 3 1707 180 0 0 0 chr5 147159571 147159591 -5377668 + (GGAGAA)n Simple_repeat Simple_repeat 4 23 0 3 1707 2199 188 76 56 chr5 147159591 147159941 -5377318 + RLTR20B3 LTR ERVK 221 563 -14 3 1707 243 211 105 0 chr5 147159976 147160033 -5377226 - RMER10A LTR ERVL -62 380 318 3 1707 267 196 0 51 chr5 147160171 147160230 -5377029 + ORR1E-int LTR MaLR 584 639 -1324 3 1707 276 196 0 18 chr5 147160230 147160287 -5376972 + MERVL_2A-int LTR ERVL 5706 5761 0 3 1707 849 241 65 60 chr5 147160300 147160702 -5376557 + MT2A LTR ERVL 26 561 -40 3 1707 576 0 0 0 chr5 147160702 147160766 -5376493 + (GA)n Simple_repeat Simple_repeat 1 64 0 3 1707 849 223 0 10 chr5 147160766 147160812 -5376447 + MT2A LTR ERVL 484 529 -4 3 1707 1877 218 35 16 chr5 147161364 147161816 -5375443 - RLTR20B3 LTR ERVK -96 481 21 3 1707 346 294 29 10 chr5 147162901 147163004 -5374255 - B4 SINE B4 -169 123 19 3 1707 1205 262 102 24 chr5 147163016 147163349 -5373910 - MTD LTR MaLR -15 404 46 3 1707 251 389 28 9 chr5 147164080 147164189 -5373070 + ORR1E LTR MaLR 1 111 -248 3 1707 239 328 16 0 chr5 147164434 147164495 -5372764 + Tigger5 DNA MER2_type 2336 2397 -9 3 1707 890 215 77 25 chr5 147164643 147164839 -5372420 - B3 SINE B2 -7 209 4 3 1707 318 106 0 0 chr5 147164994 147165041 -5372218 + (T)n Simple_repeat Simple_repeat 1 47 0 3 1707 400 260 0 96 chr5 147166012 147166127 -5371132 + PB1D7 SINE Alu 5 108 -12 3 1707 260 280 81 36 chr5 147166438 147166549 -5370710 + RMER5 LTR ERV1 5 120 -414 3 1707 1039 301 87 3 chr5 147166624 147167088 -5370171 - L1M2 LINE L1 -1621 4259 3769 3 1707 383 257 36 23 chr5 147167189 147167408 -5369851 - L1M2 LINE L1 -2841 3302 3081 3 1707 1496 63 5 5 chr5 147167455 147167646 -5369613 - B2_Mm2 SINE B2 -3 192 2 3 1707 513 115 0 0 chr5 147167649 147167727 -5369532 + (TCCC)n Simple_repeat Simple_repeat 3 80 0 3 1707 342 0 0 0 chr5 147167727 147167765 -5369494 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 3 1707 643 315 40 40 chr5 147167765 147168145 -5369114 - L1M2 LINE L1 -3101 3042 2663 3 1707 318 256 143 13 chr5 147168247 147168395 -5368864 - MTE2a LTR MaLR 0 419 253 3 1707 333 371 0 0 chr5 147168430 147168608 -5368651 + (CCTG)n Simple_repeat Simple_repeat 3 180 0 3 1707 1263 178 151 189 chr5 147168821 147168998 -5368261 + MT2A LTR ERVL 3 131 -402 3 1707 4329 123 64 15 chr5 147168998 147169252 -5368007 - RMER6A LTR ERVK 0 756 484 3 1707 340 0 16 98 chr5 147169252 147169313 -5367946 + (TTTG)n Simple_repeat Simple_repeat 2 57 0 3 1707 4329 123 64 15 chr5 147169313 147169779 -5367480 - RMER6A LTR ERVK -273 483 1 3 1707 1263 181 147 184 chr5 147169779 147170088 -5367171 + MT2A LTR ERVL 132 455 -78 3 1707 303 93 0 0 chr5 147170090 147170133 -5367126 + (TCTCCC)n Simple_repeat Simple_repeat 1 43 0 3 1707 254 141 56 14 chr5 147170140 147170212 -5367047 + MT2A LTR ERVL 459 533 0 3 1707 450 293 64 0 chr5 147170341 147170481 -5366778 - B1_Mur1 SINE Alu 0 149 1 3 1707 957 240 34 5 chr5 147171096 147171305 -5365954 - B3 SINE B2 0 216 2 3 1707 1517 123 25 60 chr5 147171316 147171633 -5365626 - RLTRETN_Mm LTR ERVK 0 409 1 3 1707 531 165 175 0 chr5 147171829 147171932 -5365327 - B1_Mur3 SINE Alu -21 128 8 3 1707 579 285 0 0 chr5 147172758 147172888 -5364371 - RSINE1 SINE B4 -33 132 3 3 1707 1074 119 19 0 chr5 147173143 147173302 -5363957 + B2_Mm2 SINE B2 1 162 -33 3 1707 249 33 0 0 chr5 147173302 147173332 -5363927 + (CTAA)n Simple_repeat Simple_repeat 3 32 0 3 1707 861 169 61 17 chr5 147173332 147173352 -5363907 + B2_Mm1t SINE B2 165 187 -6 3 1707 36 40 0 0 chr5 147173363 147173413 -5363846 + AT_rich Low_complexity Low_complexity 1 50 0 3 1707 1070 97 14 0 chr5 147174061 147174205 -5363054 - B1_Mur4 SINE Alu 0 150 5 3 1707 255 289 26 0 chr5 147174545 147174621 -5362638 + MLT2B4 LTR ERVL 18 95 -461 3 1707 263 191 0 14 chr5 147174717 147174786 -5362473 + GA-rich Low_complexity Low_complexity 2 69 0 3 1707 1895 177 106 16 chr5 147174791 147175170 -5362089 + MTD LTR MaLR 6 418 -1 3 1707 297 197 0 38 chr5 147175232 147175311 -5361948 + (GGGTG)n Simple_repeat Simple_repeat 1 76 0 3 1707 552 290 58 32 chr5 147175829 147176018 -5361241 + ORR1E LTR MaLR 44 237 -122 3 1707 361 191 283 12 chr5 147176454 147176631 -5360628 - MTD LTR MaLR -21 400 177 3 1707 414 0 0 0 chr5 147176632 147176678 -5360581 + (TC)n Simple_repeat Simple_repeat 1 46 0 3 1707 385 135 0 11 chr5 147176678 147176775 -5360484 - B2_Mm2 SINE B2 -17 178 47 3 1707 944 107 119 97 chr5 147176803 147176935 -5360324 - B2_Mm2 SINE B2 -14 181 39 3 1707 405 0 0 0 chr5 147176935 147176980 -5360279 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 3 1707 1216 49 0 0 chr5 147176982 147177125 -5360134 - B1_Mus2 SINE Alu -4 143 1 3 1707 944 107 119 97 chr5 147177125 147177165 -5360094 - B2_Mm2 SINE B2 -157 38 2 3 1707 293 212 0 57 chr5 147177165 147177235 -5360024 - MTD LTR MaLR -286 73 8 3 1707 468 242 128 32 chr5 147177256 147177444 -5359815 - L1MB3 LINE L1 -186 5997 5792 3 1707 247 75 75 0 chr5 147177743 147177796 -5359463 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 3 1707 830 164 4 17 chr5 147178112 147178342 -5358917 + CT-rich Low_complexity Low_complexity 1 226 0 3 1707 1347 268 85 12 chr5 147178343 147178744 -5358515 - Lx8 LINE L1 0 7473 7044 3 1707 320 276 84 0 chr5 147178810 147178974 -5358285 - L1_Mur3 LINE L1 -686 5611 5329 3 1707 210 150 0 0 chr5 147178974 147179014 -5358245 + (A)n Simple_repeat Simple_repeat 1 40 0 3 1707 751 189 15 0 chr5 147179015 147179147 -5358112 - B1_Mur4 SINE Alu -16 134 1 3 1707 739 316 102 28 chr5 147179165 147179595 -5357664 - L1_Mur3 LINE L1 -530 5350 4889 3 1707 840 148 75 48 chr5 147179601 147179828 -5357431 + RMER17C LTR ERVK 1 233 -177 3 1707 273 149 0 0 chr5 147179831 147179898 -5357361 + (TCTCTG)n Simple_repeat Simple_repeat 4 70 0 3 1707 981 245 34 28 chr5 147179899 147180226 -5357033 + RMER17C LTR ERVK 82 410 0 3 1707 432 320 39 30 chr5 147180226 147180429 -5356830 - L1_Mur3 LINE L1 -996 4884 4657 3 1707 807 240 80 0 chr5 147181019 147181219 -5356040 - B3 SINE B2 0 216 1 3 1707 217 317 205 16 chr5 147181438 147181560 -5355699 + MIR SINE MIR 117 261 -1 3 1707 1054 93 7 0 chr5 147181910 147182049 -5355210 + B1_Mus1 SINE Alu 2 141 -7 3 1707 455 0 18 0 chr5 147182055 147182110 -5355149 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 1707 444 147 0 0 chr5 147182118 147182193 -5355066 + (GGGA)n Simple_repeat Simple_repeat 3 77 0 3 1707 2515 113 34 10 chr5 147182804 147183189 -5354070 - ORR1B1 LTR MaLR 0 394 1 3 1707 243 0 0 0 chr5 147183978 147184005 -5353254 + (T)n Simple_repeat Simple_repeat 1 27 0 3 1707 234 0 0 0 chr5 147184189 147184215 -5353044 + (A)n Simple_repeat Simple_repeat 1 26 0 3 1707 192 200 0 0 chr5 147184259 147184299 -5352960 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 3 1707 537 216 20 0 chr5 147184458 147184560 -5352699 + B1_Mur1 SINE Alu 7 110 -39 3 1707 309 188 28 28 chr5 147184632 147184703 -5352556 + B1_Mur2 SINE Alu 70 140 -9 3 1707 192 314 56 44 chr5 147185652 147185776 -5351483 + MIRm SINE MIR 69 198 -70 3 1707 2576 55 2 98 chr5 147186636 147187035 -5350224 - RLTR10B2 LTR ERVK 0 365 5 3 1707 342 23 0 0 chr5 147187041 147187084 -5350175 - RLTR10B LTR ERVK -249 43 1 3 1707 628 198 225 6 chr5 147187269 147187442 -5349817 - B3 SINE B2 -5 211 1 3 1707 1993 186 75 3 chr5 147187493 147187889 -5349370 + ORR1B1 LTR MaLR 1 386 -8 3 1707 1154 170 33 19 chr5 147188280 147188490 -5348769 - B3 SINE B2 0 216 4 3 1707 453 103 0 0 chr5 147188648 147188716 -5348543 + (CA)n Simple_repeat Simple_repeat 1 68 0 3 1707 210 71 0 0 chr5 147188716 147188743 -5348516 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 1707 672 194 0 0 chr5 147189025 147189164 -5348095 + (TG)n Simple_repeat Simple_repeat 1 139 0 3 1707 858 277 9 105 chr5 147189164 147189487 -5347772 - B4 SINE B4 0 292 1 4 1707 2060 192 184 34 chr5 147190065 147190599 -5346660 - RMER19A LTR ERVK 0 737 124 4 1707 422 257 52 33 chr5 147190771 147190950 -5346309 - B3 SINE B2 -1 194 8 4 1707 380 222 65 83 chr5 147190973 147191081 -5346178 - B1_Mur1 SINE Alu -8 141 36 4 1707 239 104 0 59 chr5 147191090 147191116 -5346143 + T-rich Low_complexity Low_complexity 23 48 0 4 1707 1188 75 0 0 chr5 147191116 147191263 -5345996 - B1_Mus1 SINE Alu 0 148 2 4 1707 239 104 0 59 chr5 147191263 147191287 -5345972 + T-rich Low_complexity Low_complexity 2 22 0 4 1707 560 232 187 44 chr5 147192159 147192362 -5344897 + Lx5 LINE L1 6814 7045 -5 4 1707 445 243 18 0 chr5 147192761 147192930 -5344329 + G-rich Low_complexity Low_complexity 6 177 0 4 1707 241 211 183 0 chr5 147193398 147193469 -5343790 - L1MC2 LINE L1 -174 6170 6087 4 1707 405 0 0 0 chr5 147193530 147193575 -5343684 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 213 1439 288 77 50 chr5 147193588 147193927 -5343332 - L1MC2 LINE L1 -291 6053 5693 4 1708 851 239 48 0 chr5 147193927 147193942 -5343317 - B3A SINE B2 0 198 184 4 1708 360 103 0 0 chr5 147193942 147194000 -5343259 + (TG)n Simple_repeat Simple_repeat 1 58 0 4 1708 851 239 48 0 chr5 147194000 147194172 -5343087 - B3A SINE B2 -15 183 3 4 1708 1439 301 70 49 chr5 147194172 147194596 -5342663 - L1MC2 LINE L1 -652 5692 5270 4 1708 1821 122 5 123 chr5 147195083 147195456 -5341803 + ORR1A4 LTR MaLR 1 329 0 4 1708 23 54 0 0 chr5 147196816 147196853 -5340406 + GC_rich Low_complexity Low_complexity 1 37 0 4 1708 30 0 0 0 chr5 147198267 147198297 -5338962 + AT_rich Low_complexity Low_complexity 1 30 0 4 1708 990 152 18 0 chr5 147198641 147198805 -5338454 - B3 SINE B2 -49 167 1 4 1708 180 375 14 0 chr5 147198832 147198904 -5338355 - L2a LINE L2 -6 3420 3348 4 1708 606 63 0 0 chr5 147199599 147199678 -5337581 + (TTCCC)n Simple_repeat Simple_repeat 3 81 0 4 1708 390 21 0 0 chr5 147199678 147199725 -5337534 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 4 1708 223 171 27 41 chr5 147199740 147199813 -5337446 + T-rich Low_complexity Low_complexity 2 73 0 4 1708 252 350 0 0 chr5 147199907 147199967 -5337292 - ID4_ SINE ID -7 76 17 4 1708 240 319 61 41 chr5 147199961 147199977 -5337282 - PB1D10 SINE Alu -15 102 3 4 1708 256 288 85 24 chr5 147199977 147200059 -5337200 - B4A SINE B4 -118 174 88 4 1708 258 227 0 0 chr5 147200175 147200250 -5337009 + (TA)n Simple_repeat Simple_repeat 2 76 0 4 1708 212 275 21 32 chr5 147201042 147201136 -5336123 - RSINE1 SINE B4 0 165 73 4 1708 1643 215 64 5 chr5 147201208 147201600 -5335659 + MTD LTR MaLR 5 419 0 4 1708 804 189 0 0 chr5 147201849 147201981 -5335278 + B1_Mus2 SINE Alu 11 142 -5 4 1708 518 75 0 12 chr5 147201981 147202062 -5335197 + (GA)n Simple_repeat Simple_repeat 1 80 0 4 1708 533 191 72 42 chr5 147202209 147202333 -5334926 - RSINE1 SINE B4 -29 136 20 4 1708 205 200 0 18 chr5 147202493 147202549 -5334710 + A-rich Low_complexity Low_complexity 4 58 0 4 1708 982 247 165 19 chr5 147203467 147203789 -5333470 + MTD LTR MaLR 51 419 0 4 1708 1797 195 97 13 chr5 147204959 147205339 -5331920 + MTD LTR MaLR 6 417 -2 4 1708 935 74 8 0 chr5 147205650 147205772 -5331487 - B2_Mm1t SINE B2 -69 124 2 4 1708 558 317 136 4 chr5 147206489 147206761 -5330498 - L4 LINE RTE -990 1039 732 4 1708 21 0 0 0 chr5 147206913 147206934 -5330325 + AT_rich Low_complexity Low_complexity 1 21 0 4 1708 421 295 138 55 chr5 147207032 147207380 -5329879 + L1M5 LINE L1 2695 3071 -3075 4 1708 808 253 6 28 chr5 147207548 147207727 -5329532 - B3A SINE B2 -23 175 1 4 1708 247 318 37 64 chr5 147207763 147207951 -5329308 - L1MC4 LINE L1 -2205 4009 3827 4 1708 341 275 149 79 chr5 147207934 147208570 -5328689 - L1MC4 LINE L1 -3679 2536 1856 4 1708 644 103 9 0 chr5 147208598 147208714 -5328545 + (TG)n Simple_repeat Simple_repeat 2 118 0 4 1708 955 224 20 15 chr5 147208714 147208904 -5328355 - B3 SINE B2 -20 196 4 4 1708 503 295 25 13 chr5 147209020 147209178 -5328081 + MER105 DNA DNA 35 194 -10 4 1708 520 310 111 117 chr5 147209191 147209919 -5327340 - L1MC4 LINE L1 -4511 1704 981 4 1708 1892 99 49 7 chr5 147209922 147210207 -5327052 - MTC LTR MaLR 0 421 125 4 1708 712 199 22 0 chr5 147210738 147210874 -5326385 - MTC LTR MaLR -282 139 1 4 1708 193 291 12 37 chr5 147211022 147211104 -5326155 - MER5B DNA MER1_type -98 80 1 4 1708 624 116 0 0 chr5 147211154 147211249 -5326010 + (TG)n Simple_repeat Simple_repeat 1 95 0 4 1708 459 250 57 49 chr5 147211252 147211374 -5325885 - RSINE1 SINE B4 -41 124 2 4 1708 320 235 154 0 chr5 147211393 147211494 -5325765 - PB1D10 SINE Alu -2 125 7 4 1708 23 54 0 0 chr5 147211498 147211535 -5325724 + AT_rich Low_complexity Low_complexity 1 37 0 4 1708 413 181 295 16 chr5 147211650 147211779 -5325480 + B3 SINE B2 2 166 -50 4 1708 3333 226 60 34 chr5 147211746 147212552 -5324707 + RMER19B LTR ERVK 14 705 -197 4 1708 1647 166 138 74 chr5 147212651 147213370 -5323889 - RMER19B LTR ERVK -80 822 3 4 1708 240 35 0 0 chr5 147214059 147214088 -5323171 + (CGAA)n Simple_repeat Simple_repeat 2 30 0 4 1708 182 62 31 0 chr5 147214302 147214334 -5322925 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 4 1708 237 119 0 0 chr5 147214595 147214637 -5322622 + (TC)n Simple_repeat Simple_repeat 2 43 0 4 1708 21 0 0 0 chr5 147214956 147214977 -5322282 + AT_rich Low_complexity Low_complexity 1 21 0 4 1708 414 220 165 0 chr5 147214978 147215069 -5322190 - PB1D9 SINE Alu -7 113 8 4 1708 1031 96 17 22 chr5 147215099 147215280 -5321979 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4 1708 574 168 129 40 chr5 147215582 147215706 -5321553 - ORR1D2 LTR MaLR -234 136 2 4 1708 214 98 19 56 chr5 147216361 147216415 -5320844 + (GGGTG)n Simple_repeat Simple_repeat 2 53 0 4 1708 650 123 43 9 chr5 147216511 147216626 -5320633 + B2_Mm2 SINE B2 2 120 -75 4 1708 324 0 0 0 chr5 147217257 147217293 -5319966 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 1708 722 305 55 32 chr5 147217351 147217708 -5319551 - L1MD LINE L1 -631 5728 5359 4 1708 270 0 0 0 chr5 147217708 147217738 -5319521 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 1708 722 305 55 32 chr5 147217738 147217817 -5319442 - L1MD LINE L1 -1001 5358 5283 4 1708 637 221 73 40 chr5 147217817 147217987 -5319272 - B3 SINE B2 0 216 48 4 1708 211 267 5 65 chr5 147218211 147218395 -5318864 + (CACCT)n Simple_repeat Simple_repeat 5 177 0 4 1708 211 275 0 63 chr5 147218557 147218716 -5318543 + (CACCT)n Simple_repeat Simple_repeat 4 152 0 4 1708 216 279 0 68 chr5 147218879 147219056 -5318203 + (CACCT)n Simple_repeat Simple_repeat 4 168 0 4 1708 230 273 0 68 chr5 147219175 147219352 -5317907 + (CACCT)n Simple_repeat Simple_repeat 4 168 0 4 1708 1065 179 34 72 chr5 147219740 147219975 -5317284 + URR1A DNA MER1_type 1 226 0 4 1708 952 249 131 11 chr5 147221392 147221690 -5315569 - MTEa LTR MaLR -15 364 42 4 1708 4291 259 157 25 chr5 147221707 147223055 -5314204 - MTE-int LTR MaLR -6 1574 49 4 1708 616 306 42 42 chr5 147223699 147223914 -5313345 + B3 SINE B2 1 215 -1 4 1708 183 244 75 25 chr5 147223935 147224015 -5313244 + MIRc SINE MIR 183 266 -2 4 1708 440 228 43 9 chr5 147224163 147224278 -5312981 - PB1D9 SINE Alu -1 119 1 4 1708 275 250 0 0 chr5 147226055 147226155 -5311104 + (CTGTG)n Simple_repeat Simple_repeat 1 100 0 4 1708 513 240 16 16 chr5 147227607 147227734 -5309525 + B3 SINE B2 84 210 -6 4 1708 210 220 40 0 chr5 147228131 147228181 -5309078 + CT-rich Low_complexity Low_complexity 3 54 0 4 1708 2697 152 64 6 chr5 147229115 147229613 -5307646 + RLTR11A2 LTR ERVK 1 527 0 4 1708 236 396 49 34 chr5 147229721 147229925 -5307334 - MER3 DNA MER1_type -2 207 1 4 1708 894 163 20 0 chr5 147230268 147230415 -5306844 - B3 SINE B2 -66 150 1 4 1708 888 260 136 92 chr5 147231137 147231667 -5305592 - RMER4B LTR ERVK -24 587 1 4 1708 444 199 224 32 chr5 147231667 147231868 -5305391 - ORR1E LTR MaLR -61 309 49 4 1708 415 235 0 39 chr5 147232029 147232131 -5305128 - B3A SINE B2 -91 107 10 4 1708 2003 43 8 15 chr5 147232159 147232421 -5304838 - L1_Mus3 LINE L1 0 6638 6379 4 1708 1748 43 0 0 chr5 147232421 147232628 -5304631 + L1_Mus3 LINE L1 6190 6396 -242 4 1708 851 148 172 8 chr5 147233867 147234050 -5303209 - B3 SINE B2 -5 211 17 4 1708 2016 113 12 51 chr5 147234097 147234432 -5302827 - RLTRETN_Mm LTR ERVK 0 322 1 4 1708 313 250 0 0 chr5 147234432 147234492 -5302767 - RMER30 DNA MER1_type -138 64 5 4 1708 327 49 0 0 chr5 147235160 147235201 -5302058 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1708 261 0 0 0 chr5 147235518 147235547 -5301712 + (TG)n Simple_repeat Simple_repeat 1 29 0 4 1708 325 254 8 8 chr5 147235691 147235822 -5301437 + (TG)n Simple_repeat Simple_repeat 1 131 0 4 1708 204 158 0 0 chr5 147235886 147235924 -5301335 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1708 1262 202 9 0 chr5 147236961 147237194 -5300065 + MTD LTR MaLR 11 245 -174 4 1708 623 324 21 21 chr5 147238820 147239151 -5298108 - L1M3 LINE L1 -1873 4267 3937 4 1708 715 277 112 28 chr5 147239158 147239444 -5297815 - RMER5 LTR ERV1 -2 532 223 4 1708 285 100 0 0 chr5 147240087 147240137 -5297122 + (TG)n Simple_repeat Simple_repeat 2 51 0 4 1708 259 336 93 17 chr5 147240885 147241003 -5296256 - ERVL-E-int LTR ERVL -2801 2866 2740 4 1708 725 236 24 39 chr5 147242178 147242385 -5294874 - RLTR15 LTR ERVK -155 204 1 4 1708 844 289 89 26 chr5 147243215 147243641 -5293618 - MER74A LTR ERVL -54 504 52 4 1708 232 292 94 62 chr5 147244351 147244479 -5292780 - HAL1 LINE L1 -1744 763 632 4 1708 266 241 23 101 chr5 147245171 147245300 -5291959 + L1ME3B LINE L1 5698 5816 -424 4 1708 962 274 133 29 chr5 147245417 147245935 -5291324 - Lx9 LINE L1 -7 7637 7066 5 1708 288 269 145 19 chr5 147246006 147246165 -5291094 + L1ME3B LINE L1 5817 5995 -245 4 1708 829 167 34 27 chr5 147246400 147246548 -5290711 - B1_Mur1 SINE Alu 0 149 1 5 1708 201 327 18 0 chr5 147247406 147247461 -5289798 + L2a LINE L2 3364 3419 -7 5 1708 297 257 0 0 chr5 147247842 147248021 -5289238 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1708 22 0 0 0 chr5 147248239 147248261 -5288998 + AT_rich Low_complexity Low_complexity 1 22 0 5 1708 412 297 99 36 chr5 147248781 147248973 -5288286 + MLT1D LTR MaLR 295 498 -7 5 1708 3742 44 5 0 chr5 147249018 147249452 -5287807 - RLTR10C LTR ERVK 0 436 1 5 1708 450 194 23 0 chr5 147249795 147249894 -5287365 - ORR1D2 LTR MaLR -257 102 1 5 1708 429 289 51 31 chr5 147250276 147250472 -5286787 + ID_B1 SINE B4 3 202 -22 5 1708 423 306 73 101 chr5 147251734 147251932 -5285327 + L1MC LINE L1 5125 5310 -836 5 1708 982 177 58 10 chr5 147251932 147252137 -5285122 + B3 SINE B2 2 216 0 5 1708 423 306 73 101 chr5 147252137 147252225 -5285034 + L1MC LINE L1 5311 5403 -743 5 1708 185 65 32 0 chr5 147252382 147252413 -5284846 + (TC)n Simple_repeat Simple_repeat 1 32 0 5 1708 584 296 81 35 chr5 147253104 147253684 -5283575 + Lx8 LINE L1 4999 5649 -231 5 1708 427 202 0 25 chr5 147253707 147253788 -5283471 - B3A SINE B2 -81 117 39 5 1708 309 309 75 11 chr5 147253824 147254027 -5283232 + Lx8 LINE L1 5710 5927 -1546 5 1708 203 250 33 0 chr5 147254186 147254246 -5283013 + (TA)n Simple_repeat Simple_repeat 2 63 0 5 1708 1297 207 89 56 chr5 147254284 147254661 -5282598 - ORR1B1 LTR MaLR -8 386 29 5 1708 862 234 39 0 chr5 147254709 147254914 -5282345 + B3 SINE B2 4 216 0 5 1708 354 339 35 52 chr5 147254916 147255090 -5282169 + L1M5 LINE L1 2474 2644 -3502 5 1708 514 331 13 7 chr5 147255138 147255290 -5281969 + RSINE1 SINE B4 9 161 -4 5 1708 1106 179 20 15 chr5 147255365 147255569 -5281690 - B3 SINE B2 -10 206 2 5 1708 26 50 0 0 chr5 147255571 147255611 -5281648 + AT_rich Low_complexity Low_complexity 1 40 0 5 1708 433 274 121 0 chr5 147256554 147256678 -5280581 + L2 LINE L2 2320 2458 -961 5 1708 325 186 50 131 chr5 147257029 147257128 -5280131 + B3 SINE B2 126 216 0 5 1708 441 145 0 0 chr5 147257802 147257878 -5279381 + (TG)n Simple_repeat Simple_repeat 2 77 0 5 1708 1033 258 138 11 chr5 147258615 147259050 -5278209 - L1MB2 LINE L1 -3 6168 5679 5 1708 800 221 75 15 chr5 147259051 147259245 -5278014 - B3 SINE B2 -6 210 23 5 1708 7120 58 8 3 chr5 147259575 147260973 -5276286 + L1Md_F LINE L1 382 1786 -4097 5 1708 6537 73 2 0 chr5 147260972 147261833 -5275426 + L1Md_F LINE L1 2390 3252 -2631 5 1708 2111 33 0 0 chr5 147261831 147262072 -5275187 + L1Md_F2 LINE L1 5346 5586 -297 5 1708 8417 39 0 7 chr5 147262072 147263074 -5274185 + L1Md_F2 LINE L1 5587 6581 -1 5 1708 561 147 0 0 chr5 147263093 147263188 -5274071 + (TA)n Simple_repeat Simple_repeat 1 95 0 5 1708 22 0 0 0 chr5 147263873 147263895 -5273364 + AT_rich Low_complexity Low_complexity 1 22 0 5 1708 807 254 39 6 chr5 147264581 147264763 -5272496 + B3A SINE B2 1 188 -10 5 1708 572 193 60 28 chr5 147266331 147266489 -5270770 - B3A SINE B2 -19 176 5 5 1708 765 184 8 0 chr5 147267918 147268043 -5269216 + B1_Mur1 SINE Alu 18 143 -6 5 1708 336 48 0 0 chr5 147268656 147268698 -5268561 + (ATTG)n Simple_repeat Simple_repeat 1 42 0 5 1708 1100 156 25 20 chr5 147268698 147268895 -5268364 - B3 SINE B2 -17 199 2 5 1708 441 0 0 0 chr5 147268983 147269032 -5268227 + (TG)n Simple_repeat Simple_repeat 1 49 0 5 1708 294 288 176 43 chr5 147269037 147269316 -5267943 - Lx7 LINE L1 -1788 5908 5593 5 1708 434 326 65 80 chr5 147269605 147270447 -5266812 - L1M2 LINE L1 -2318 3825 2996 5 1708 245 262 110 110 chr5 147271620 147271727 -5265532 + L2a LINE L2 3241 3332 -94 5 1708 405 0 0 0 chr5 147271727 147271772 -5265487 + (TG)n Simple_repeat Simple_repeat 2 46 0 5 1708 245 262 110 110 chr5 147271772 147271810 -5265449 + L2a LINE L2 3333 3385 -41 5 1708 877 206 52 0 chr5 147273353 147273547 -5263712 + ID_B1 SINE B4 4 207 -17 5 1708 828 239 5 16 chr5 147274395 147274582 -5262677 - B3 SINE B2 -29 187 3 5 1708 611 200 61 48 chr5 147274819 147274966 -5262293 - B1_Mur2 SINE Alu 0 149 1 5 1708 29 0 0 0 chr5 147274976 147275005 -5262254 + AT_rich Low_complexity Low_complexity 1 29 0 5 1708 3518 20 5 0 chr5 147276175 147276569 -5260690 + MTA_Mm LTR MaLR 1 396 0 5 1708 501 17 0 0 chr5 147280884 147280942 -5256317 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1708 197 210 16 0 chr5 147281390 147281452 -5255807 + (TG)n Simple_repeat Simple_repeat 1 63 0 5 1708 210 236 0 0 chr5 147284339 147284394 -5252865 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 5 1708 695 173 23 0 chr5 147284416 147284589 -5252670 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 5 1708 186 206 27 14 chr5 147284642 147284716 -5252543 + (TGGA)n Simple_repeat Simple_repeat 1 75 0 5 1708 261 57 0 0 chr5 147285000 147285035 -5252224 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5 1708 439 267 148 57 chr5 147285213 147285443 -5251816 - RMER2 LTR ERV1 0 567 317 5 1708 294 338 24 53 chr5 147285765 147286012 -5251247 + MuRRS4-int LTR ERV1 3084 3323 -4283 5 1708 286 214 0 0 chr5 147286023 147286079 -5251180 + MuRRS4-int LTR ERV1 3508 3563 -4038 5 1708 323 242 7 101 chr5 147286084 147286230 -5251029 + MuRRS4-int LTR ERV1 3527 3642 -3810 5 1708 208 240 98 90 chr5 147287120 147287253 -5250006 + L3 LINE CR1 2644 2777 -1712 5 1708 599 281 108 9 chr5 147287310 147287415 -5249844 + MuRRS4-int LTR ERV1 3722 3842 -1221 5 1708 504 0 0 0 chr5 147287415 147287471 -5249788 + (TG)n Simple_repeat Simple_repeat 2 57 0 5 1708 599 288 106 16 chr5 147287471 147287651 -5249608 + MuRRS4-int LTR ERV1 3843 3954 -1109 5 1708 305 303 109 69 chr5 147287995 147288197 -5249062 - RMER2 LTR ERV1 -69 498 289 5 1708 2443 47 23 0 chr5 147288631 147288931 -5248328 + L1Md_F2 LINE L1 6267 6573 -9 5 1708 695 226 20 0 chr5 147289530 147289676 -5247583 + B3 SINE B2 8 156 -60 5 1708 1197 21 0 0 chr5 147289676 147289819 -5247440 + L1Md_A LINE L1 6439 6581 -1 5 1708 267 298 121 71 chr5 147290353 147290494 -5246765 - B1_Mur2 SINE Alu -1 148 1 5 1708 737 234 68 0 chr5 147292067 147292259 -5245000 + B3 SINE B2 2 206 -10 5 1708 201 224 0 0 chr5 147292991 147293049 -5244210 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1708 22 0 0 0 chr5 147296249 147296271 -5240988 + AT_rich Low_complexity Low_complexity 1 22 0 5 1708 335 291 36 6 chr5 147297793 147297908 -5239351 + B4A SINE B4 9 127 -165 5 1708 1567 226 81 0 chr5 147297934 147298279 -5238980 + MTD LTR MaLR 46 418 -1 5 1708 349 275 9 9 chr5 147298439 147298549 -5238710 + (CA)n Simple_repeat Simple_repeat 2 111 0 5 1708 1751 149 73 0 chr5 147298549 147298850 -5238409 - ORR1A2 LTR MaLR 0 327 5 5 1708 309 109 0 0 chr5 147298850 147298905 -5238354 + (CA)n Simple_repeat Simple_repeat 1 55 0 5 1708 865 291 28 0 chr5 147298928 147299141 -5238118 - MT2A LTR ERVL -68 465 247 5 1708 428 172 11 22 chr5 147299139 147299228 -5238031 + RLTR12A LTR ERVK 481 568 0 5 1708 286 281 132 62 chr5 147299752 147299881 -5237378 - B1_Mur4 SINE Alu 0 150 13 5 1708 839 229 68 0 chr5 147301473 147301665 -5235594 + B3 SINE B2 8 212 -4 5 1708 180 241 0 0 chr5 147302391 147302449 -5234810 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1708 182 236 16 98 chr5 147303249 147303310 -5233949 + L2 LINE L2 2740 2795 -624 5 1708 23 0 0 0 chr5 147305676 147305699 -5231560 + AT_rich Low_complexity Low_complexity 1 23 0 5 1708 226 333 16 0 chr5 147307235 147307298 -5229961 + B4A SINE B4 21 84 -208 5 1708 1140 231 75 15 chr5 147307328 147307596 -5229663 + MTD LTR MaLR 1 284 -135 5 1708 628 137 0 0 chr5 147307593 147307688 -5229571 - ORR1A2 LTR MaLR -231 96 2 5 1708 417 90 0 0 chr5 147307688 147307755 -5229504 + (TC)n Simple_repeat Simple_repeat 2 68 0 5 1708 360 43 0 0 chr5 147307755 147307801 -5229458 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1708 284 349 18 70 chr5 147307944 147308058 -5229201 - B1F SINE Alu -15 134 27 5 1708 529 235 23 0 chr5 147308087 147308219 -5229040 + URR1B DNA MER1_type 88 222 -3 5 1708 449 304 104 18 chr5 147308585 147308806 -5228453 + RMER15 LTR ERVL 245 484 -91 5 1708 236 229 16 32 chr5 147308810 147308873 -5228386 + ORR1E LTR MaLR 1 62 -297 5 1708 315 104 0 0 chr5 147308944 147308992 -5228267 + (GA)n Simple_repeat Simple_repeat 1 48 0 5 1708 1546 224 53 28 chr5 147309223 147309582 -5227677 - ORR1D1 LTR MaLR -6 368 1 5 1708 825 277 11 16 chr5 147309621 147309808 -5227451 + B3 SINE B2 2 187 -29 5 1708 997 281 21 18 chr5 147309815 147309861 -5227398 - MT2A LTR ERVL 0 533 487 5 1708 482 91 13 0 chr5 147309861 147309938 -5227321 + (CA)n Simple_repeat Simple_repeat 2 79 0 5 1708 997 281 21 18 chr5 147309938 147310177 -5227082 - MT2A LTR ERVL -47 486 247 5 1708 393 195 11 11 chr5 147310175 147310263 -5226996 + RLTR12A LTR ERVK 481 568 0 5 1708 283 265 121 64 chr5 147310787 147310928 -5226331 - B1_Mur2 SINE Alu 0 149 1 5 1708 839 229 68 0 chr5 147312509 147312701 -5224558 + B3 SINE B2 8 212 -4 5 1708 180 241 0 0 chr5 147313428 147313486 -5223773 + (TG)n Simple_repeat Simple_repeat 1 58 0 5 1708 182 236 16 98 chr5 147314286 147314347 -5222912 + L2 LINE L2 2740 2795 -624 5 1708 22 0 0 0 chr5 147316728 147316750 -5220509 + AT_rich Low_complexity Low_complexity 1 22 0 5 1708 326 293 45 12 chr5 147318279 147318383 -5218876 + B4A SINE B4 9 117 -175 5 1708 1437 257 82 11 chr5 147318383 147318761 -5218498 + MTD LTR MaLR 1 405 -14 5 1708 237 358 44 22 chr5 147318784 147318921 -5218338 + B4 SINE B4 137 276 -16 5 1708 266 169 0 15 chr5 147318983 147319049 -5218210 + (CA)n Simple_repeat Simple_repeat 2 66 0 5 1708 1897 134 62 0 chr5 147319052 147319357 -5217902 - ORR1A2 LTR MaLR -2 325 2 5 1708 522 70 0 0 chr5 147319357 147319428 -5217831 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1708 285 75 0 0 chr5 147319428 147319468 -5217791 + (CA)n Simple_repeat Simple_repeat 1 40 0 5 1708 312 192 35 93 chr5 147319610 147319696 -5217563 - B1F1 SINE Alu -15 134 54 5 1708 544 240 16 0 chr5 147319784 147319913 -5217346 + URR1B DNA MER1_type 88 218 -7 6 1708 470 299 104 18 chr5 147320310 147320531 -5216728 + RMER15 LTR ERVL 245 484 -91 6 1708 236 229 16 32 chr5 147320535 147320598 -5216661 + ORR1E LTR MaLR 1 62 -297 6 1708 315 104 0 0 chr5 147320669 147320717 -5216542 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1708 1467 220 52 41 chr5 147320939 147321308 -5215951 - ORR1D1 LTR MaLR -1 373 1 6 1708 825 277 11 16 chr5 147321347 147321534 -5215725 + B3 SINE B2 2 187 -29 6 1708 997 281 21 18 chr5 147321541 147321587 -5215672 - MT2A LTR ERVL 0 533 487 6 1708 443 107 13 0 chr5 147321587 147321662 -5215597 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 1708 997 281 21 18 chr5 147321662 147321901 -5215358 - MT2A LTR ERVL -47 486 247 6 1708 393 195 11 11 chr5 147321899 147321987 -5215272 + RLTR12A LTR ERVK 481 568 0 6 1708 330 273 121 64 chr5 147322511 147322652 -5214607 - B1_Mur2 SINE Alu 0 149 1 6 1708 839 229 68 0 chr5 147324233 147324425 -5212834 + B3 SINE B2 8 212 -4 6 1709 180 241 0 0 chr5 147325151 147325209 -5212050 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1709 182 236 16 98 chr5 147326009 147326070 -5211189 + L2 LINE L2 2740 2795 -624 6 1709 25 51 0 0 chr5 147328430 147328469 -5208790 + AT_rich Low_complexity Low_complexity 1 39 0 6 1709 317 284 27 0 chr5 147330006 147330080 -5207179 + B4A SINE B4 9 84 -208 6 1709 1610 232 79 11 chr5 147330110 147330489 -5206770 + MTD LTR MaLR 1 405 -14 6 1709 289 350 50 14 chr5 147330513 147330652 -5206607 + B4A SINE B4 134 277 -15 6 1709 218 180 0 16 chr5 147330713 147330775 -5206484 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1709 1911 131 62 0 chr5 147330778 147331083 -5206176 - ORR1A2 LTR MaLR -2 325 2 6 1709 329 93 19 0 chr5 147331083 147331137 -5206122 + (TC)n Simple_repeat Simple_repeat 2 56 0 6 1709 186 43 0 0 chr5 147331137 147331160 -5206099 + (CA)n Simple_repeat Simple_repeat 1 23 0 6 1709 349 325 43 9 chr5 147331304 147331419 -5205840 - B1F1 SINE Alu -15 134 16 6 1709 532 248 16 0 chr5 147331439 147331568 -5205691 + URR1B DNA MER1_type 88 218 -7 6 1709 428 299 104 18 chr5 147331964 147332185 -5205074 + RMER15 LTR ERVL 245 484 -91 6 1709 238 226 0 127 chr5 147332189 147332260 -5204999 + ORR1E LTR MaLR 1 62 -297 6 1709 321 118 0 0 chr5 147332344 147332395 -5204864 + (GA)n Simple_repeat Simple_repeat 2 52 0 6 1709 1502 227 32 35 chr5 147332618 147332992 -5204267 - ORR1D1 LTR MaLR -1 373 1 6 1709 798 288 11 16 chr5 147333031 147333218 -5204041 + B3 SINE B2 2 187 -29 6 1709 960 286 25 14 chr5 147333225 147333271 -5203988 - MT2A LTR ERVL 0 533 487 6 1709 509 80 13 0 chr5 147333271 147333346 -5203913 + (CA)n Simple_repeat Simple_repeat 2 77 0 6 1709 960 286 25 14 chr5 147333346 147333583 -5203676 - MT2A LTR ERVL -47 486 247 6 1709 380 190 12 23 chr5 147333583 147333669 -5203590 + RLTR12A LTR ERVK 484 568 0 6 1709 314 282 140 37 chr5 147334197 147334333 -5202926 - B1_Mur4 SINE Alu 0 150 1 6 1709 681 242 72 5 chr5 147335902 147336097 -5201162 + B3 SINE B2 2 209 -7 6 1709 251 259 0 0 chr5 147336828 147336886 -5200373 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1709 25 51 0 0 chr5 147340081 147340120 -5197139 + AT_rich Low_complexity Low_complexity 1 39 0 6 1709 325 284 27 0 chr5 147341652 147341726 -5195533 + B4A SINE B4 9 84 -208 6 1709 1543 233 82 11 chr5 147341756 147342134 -5195125 + MTD LTR MaLR 1 405 -14 6 1709 306 304 65 29 chr5 147342158 147342297 -5194962 + B4A SINE B4 134 277 -15 6 1709 211 222 12 12 chr5 147342338 147342420 -5194839 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1709 1876 139 66 0 chr5 147342422 147342724 -5194535 - ORR1A2 LTR MaLR -1 326 5 6 1709 294 50 0 0 chr5 147342724 147342764 -5194495 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1709 317 192 35 93 chr5 147342907 147342993 -5194266 - B1F1 SINE Alu -15 134 54 6 1709 511 252 16 0 chr5 147343081 147343208 -5194051 + URR1B DNA MER1_type 88 216 -9 6 1709 438 309 104 18 chr5 147343606 147343827 -5193432 + RMER15 LTR ERVL 245 484 -91 6 1709 261 242 0 16 chr5 147343831 147343894 -5193365 + ORR1E LTR MaLR 1 62 -297 6 1709 606 135 0 0 chr5 147343965 147344069 -5193190 + (GA)n Simple_repeat Simple_repeat 1 104 0 6 1709 1525 227 39 33 chr5 147344304 147344664 -5192595 - ORR1D1 LTR MaLR -12 362 1 6 1709 388 306 0 27 chr5 147344703 147344814 -5192445 + B3 SINE B2 2 109 -107 6 1709 310 146 0 0 chr5 147344806 147344854 -5192405 - ORR1C2 LTR MaLR -336 48 1 6 1709 792 288 11 16 chr5 147344893 147345080 -5192179 + B3 SINE B2 2 187 -29 6 1709 260 172 0 17 chr5 147345133 147345192 -5192067 + (CA)n Simple_repeat Simple_repeat 2 59 0 6 1709 862 294 23 0 chr5 147345215 147345429 -5191830 - MT2A LTR ERVL -68 465 247 6 1709 385 190 12 12 chr5 147345429 147345514 -5191745 + RLTR12A LTR ERVK 484 568 0 6 1709 280 275 132 70 chr5 147346034 147346163 -5191096 - B1_Mur4 SINE Alu -1 149 13 6 1709 747 240 68 0 chr5 147347750 147347942 -5189317 + B3 SINE B2 2 206 -10 6 1709 262 259 0 0 chr5 147348674 147348732 -5188527 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1709 181 236 16 98 chr5 147349534 147349595 -5187664 + L2 LINE L2 2740 2795 -624 6 1709 25 51 0 0 chr5 147351955 147351994 -5185265 + AT_rich Low_complexity Low_complexity 1 39 0 6 1709 325 284 27 0 chr5 147353529 147353603 -5183656 + B4A SINE B4 9 84 -208 6 1709 2821 45 3 3 chr5 147353607 147353944 -5183315 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1709 20829 31 67 46 chr5 147353944 147356171 -5181088 + IAPEz-int LTR ERVK 8 2354 -4127 6 1709 183 265 105 35 chr5 147356171 147356257 -5181002 + L3 LINE CR1 729 820 -3669 6 1709 20829 31 67 46 chr5 147356257 147356632 -5180627 + IAPEz-int LTR ERVK 2355 2751 -3730 6 1709 29389 16 2 0 chr5 147356624 147359856 -5177403 + IAPEz-int LTR ERVK 3244 6481 0 6 1709 2845 39 3 3 chr5 147359856 147360193 -5177066 + IAPLTR1a_Mm LTR ERVK 1 337 0 6 1709 1543 233 82 11 chr5 147360225 147360603 -5176656 + MTD LTR MaLR 1 405 -14 6 1709 306 304 65 29 chr5 147360627 147360766 -5176493 + B4A SINE B4 134 277 -15 6 1709 211 222 12 12 chr5 147360807 147360889 -5176370 + (CA)n Simple_repeat Simple_repeat 1 82 0 6 1709 1876 139 66 0 chr5 147360891 147361193 -5176066 - ORR1A2 LTR MaLR -1 326 5 6 1709 294 50 0 0 chr5 147361193 147361233 -5176026 + (CA)n Simple_repeat Simple_repeat 1 40 0 6 1709 317 192 35 93 chr5 147361376 147361462 -5175797 - B1F1 SINE Alu -15 134 54 6 1709 511 252 16 0 chr5 147361550 147361677 -5175582 + URR1B DNA MER1_type 88 216 -9 6 1709 438 309 104 18 chr5 147362075 147362296 -5174963 + RMER15 LTR ERVL 245 484 -91 6 1709 261 242 0 16 chr5 147362300 147362363 -5174896 + ORR1E LTR MaLR 1 62 -297 6 1709 786 113 0 0 chr5 147362434 147362558 -5174701 + (GA)n Simple_repeat Simple_repeat 1 124 0 6 1709 1509 230 39 33 chr5 147362795 147363155 -5174104 - ORR1D1 LTR MaLR -12 362 1 6 1709 388 306 0 27 chr5 147363194 147363305 -5173954 + B3 SINE B2 2 109 -107 6 1709 310 146 0 0 chr5 147363297 147363345 -5173914 - ORR1C2 LTR MaLR -336 48 1 6 1709 776 294 11 16 chr5 147363384 147363571 -5173688 + B3 SINE B2 2 187 -29 6 1709 973 282 25 14 chr5 147363578 147363624 -5173635 - MT2A LTR ERVL 0 533 487 6 1709 620 59 12 0 chr5 147363624 147363709 -5173550 + (CA)n Simple_repeat Simple_repeat 2 87 0 6 1709 973 282 25 14 chr5 147363709 147363946 -5173313 - MT2A LTR ERVL -47 486 247 6 1709 385 190 12 12 chr5 147363946 147364031 -5173228 + RLTR12A LTR ERVK 484 568 0 6 1709 335 275 121 71 chr5 147364551 147364692 -5172567 - B1_Mur2 SINE Alu -1 148 1 6 1709 710 241 73 5 chr5 147366240 147366432 -5170827 + B3 SINE B2 2 206 -10 6 1709 262 259 0 0 chr5 147367162 147367220 -5170039 + (TG)n Simple_repeat Simple_repeat 1 58 0 6 1709 181 236 16 98 chr5 147368022 147368083 -5169176 + L2 LINE L2 2740 2795 -624 6 1709 25 51 0 0 chr5 147370443 147370482 -5166777 + AT_rich Low_complexity Low_complexity 1 39 0 6 1709 220 359 0 0 chr5 147372024 147372088 -5165171 + B4A SINE B4 21 84 -208 6 1709 1548 245 77 10 chr5 147372118 147372510 -5164749 + MTD LTR MaLR 1 418 -1 6 1709 268 350 32 24 chr5 147372536 147372659 -5164600 + B4A SINE B4 153 276 -16 6 1709 230 180 0 16 chr5 147372721 147372783 -5164476 + (CA)n Simple_repeat Simple_repeat 2 62 0 6 1709 1768 156 63 0 chr5 147372786 147373088 -5164171 - ORR1A2 LTR MaLR -2 325 5 6 1709 594 51 0 0 chr5 147373088 147373166 -5164093 + (CA)n Simple_repeat Simple_repeat 1 78 0 6 1709 364 295 42 10 chr5 147373307 147373403 -5163856 - B1F1 SINE Alu -15 134 36 6 1709 561 233 15 0 chr5 147373442 147373575 -5163684 + URR1B DNA MER1_type 88 222 -3 6 1709 374 342 95 14 chr5 147373940 147374162 -5163097 + RMER15 LTR ERVL 245 484 -91 6 1709 280 182 36 0 chr5 147374171 147374226 -5163033 + ORR1E LTR MaLR 6 62 -297 6 1709 918 87 0 32 chr5 147374296 147374450 -5162809 + (GGAA)n Simple_repeat Simple_repeat 2 150 0 6 1709 1352 46 11 0 chr5 147374450 147374625 -5162634 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 6 1709 1675 209 30 27 chr5 147374850 147375223 -5162036 - ORR1D1 LTR MaLR 0 374 1 6 1709 962 226 11 16 chr5 147375263 147375452 -5161807 + B3 SINE B2 2 189 -27 6 1709 1070 228 107 30 chr5 147375457 147375952 -5161307 - MT2A LTR ERVL 0 533 1 6 1709 30 0 0 0 chr5 147375959 147375989 -5161270 + AT_rich Low_complexity Low_complexity 1 30 0 6 1709 1156 62 14 0 chr5 147376155 147376300 -5160959 - B1_Mus2 SINE Alu 0 147 1 6 1709 645 163 138 33 chr5 147376834 147376986 -5160273 - RLTR20C LTR ERVK 0 578 411 6 1709 717 203 114 63 chr5 147376966 147377247 -5160012 - RLTR20C LTR ERVK -222 312 1 6 1709 2256 148 19 14 chr5 147377287 147377658 -5159601 + RLTR14 LTR ERV1 1 373 -9 6 1709 370 350 124 43 chr5 147378192 147378272 -5158987 - L1M5 LINE L1 -2710 3436 3353 6 1709 806 193 14 0 chr5 147378272 147378417 -5158842 - B1_Mur1 SINE Alu 0 149 3 6 1709 370 344 87 50 chr5 147378417 147378741 -5158518 - L1M5 LINE L1 -2794 3352 2971 6 1709 945 158 55 45 chr5 147378758 147378957 -5158302 - B3 SINE B2 -10 206 6 7 1709 202 188 0 0 chr5 147378962 147378994 -5158265 + (CAA)n Simple_repeat Simple_repeat 2 33 0 7 1709 23 78 0 0 chr5 147379018 147379069 -5158190 + AT_rich Low_complexity Low_complexity 1 51 0 7 1709 211 0 28 56 chr5 147379142 147379178 -5158081 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 7 1709 315 153 94 41 chr5 147379235 147379405 -5157854 + (TTAA)n Simple_repeat Simple_repeat 1 179 0 7 1709 4437 47 7 0 chr5 147379743 147380281 -5156978 + L1Md_F2 LINE L1 6041 6582 0 7 1709 891 271 31 12 chr5 147380749 147381007 -5156252 - RMER5 LTR ERV1 -37 497 235 7 1709 264 329 11 102 chr5 147381355 147381424 -5155835 - B4A SINE B4 -132 160 1 7 1709 462 276 0 19 chr5 147381424 147381531 -5155728 - B3A SINE B2 -93 105 1 7 1709 383 142 52 0 chr5 147381610 147381698 -5155561 + PB1D9 SINE Alu 5 99 -50 7 1709 701 252 0 28 chr5 147381683 147381826 -5155433 - RSINE1 SINE B4 -22 143 5 7 1709 4135 129 77 1 chr5 147381835 147382500 -5154759 - Lx4A LINE L1 -1 7057 6343 7 1709 678 87 0 0 chr5 147382897 147383000 -5154259 + (CA)n Simple_repeat Simple_repeat 2 104 0 7 1709 22 0 0 0 chr5 147383025 147383047 -5154212 + AT_rich Low_complexity Low_complexity 1 22 0 7 1709 180 77 0 0 chr5 147383149 147383175 -5154084 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 7 1709 778 183 8 0 chr5 147383181 147383312 -5153947 - B1_Mur4 SINE Alu -17 133 2 7 1709 944 224 25 10 chr5 147384293 147384496 -5152763 + B3 SINE B2 1 206 -10 7 1709 1168 50 7 0 chr5 147384541 147384681 -5152578 + B1_Mm SINE Alu 1 141 -6 7 1709 330 378 8 0 chr5 147384723 147384850 -5152409 - MER3 DNA MER1_type -1 208 81 7 1709 1077 114 206 0 chr5 147384957 147385132 -5152127 - B3 SINE B2 -5 211 1 7 1709 396 267 167 5 chr5 147385416 147385608 -5151651 - RLTR21 LTR ERVK -251 1321 1099 7 1709 204 268 0 0 chr5 147385648 147385730 -5151529 + (CA)n Simple_repeat Simple_repeat 2 83 0 7 1709 182 281 29 59 chr5 147386215 147386283 -5150976 - MIRb SINE MIR -70 198 133 7 1709 34 55 0 0 chr5 147387728 147387783 -5149476 + AT_rich Low_complexity Low_complexity 1 55 0 7 1709 325 292 87 40 chr5 147387944 147388094 -5149165 - MER5A DNA MER1_type -5 184 28 7 1709 222 150 0 0 chr5 147388096 147388136 -5149123 + (TGG)n Simple_repeat Simple_repeat 1 40 0 7 1709 786 249 11 0 chr5 147388399 147388576 -5148683 - B3A SINE B2 -17 181 3 7 1709 1266 40 0 0 chr5 147388614 147388762 -5148497 + B1_Mus1 SINE Alu 1 148 0 7 1709 207 0 0 0 chr5 147388762 147388785 -5148474 + (A)n Simple_repeat Simple_repeat 1 23 0 7 1709 594 0 0 0 chr5 147389072 147389138 -5148121 + (TC)n Simple_repeat Simple_repeat 1 66 0 7 1709 189 0 0 0 chr5 147389301 147389322 -5147937 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 7 1709 414 0 0 0 chr5 147389346 147389392 -5147867 + (TG)n Simple_repeat Simple_repeat 2 47 0 7 1709 246 62 0 0 chr5 147389414 147389446 -5147813 + (TGG)n Simple_repeat Simple_repeat 1 32 0 7 1709 394 136 0 0 chr5 147389614 147389673 -5147586 - PB1D10 SINE Alu -17 100 42 7 1709 289 192 22 96 chr5 147389672 147389772 -5147487 + PB1 SINE Alu 16 127 0 7 1709 200 167 37 0 chr5 147389772 147389826 -5147433 + A-rich Low_complexity Low_complexity 1 56 0 7 1709 306 0 0 0 chr5 147390197 147390231 -5147028 + (CA)n Simple_repeat Simple_repeat 2 35 0 7 1709 269 322 103 14 chr5 147390498 147390643 -5146616 + MER5A1 DNA MER1_type 8 165 -1 7 1709 330 291 0 16 chr5 147391072 147391209 -5146050 + ID2 SINE ID 1 134 -18 7 1709 706 253 6 47 chr5 147391645 147391815 -5145444 + RSINE1 SINE B4 3 165 0 7 1709 869 249 28 23 chr5 147392396 147392610 -5144649 + B3 SINE B2 1 215 -1 7 1709 1353 62 22 6 chr5 147392893 147393071 -5144188 + B2_Mm2 SINE B2 1 181 -14 7 1709 391 124 0 5 chr5 147393084 147393149 -5144110 + B2_Mm2 SINE B2 47 109 -107 7 1709 23 0 0 0 chr5 147393787 147393810 -5143449 + AT_rich Low_complexity Low_complexity 1 23 0 7 1709 267 31 0 0 chr5 147394420 147394452 -5142807 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7 1709 185 200 221 26 chr5 147397663 147397740 -5139519 - MER5A DNA MER1_type -91 98 7 7 1709 1054 183 39 5 chr5 147398001 147398204 -5139055 + B3 SINE B2 1 210 -6 7 1709 497 212 41 34 chr5 147398636 147398778 -5138481 + ORR1D1 LTR MaLR 218 361 -13 7 1709 25 51 0 0 chr5 147399169 147399208 -5138051 + AT_rich Low_complexity Low_complexity 1 39 0 7 1709 315 49 0 0 chr5 147399625 147399666 -5137593 + (TG)n Simple_repeat Simple_repeat 2 42 0 7 1709 318 237 0 0 chr5 147399777 147399836 -5137423 + ID_B1 SINE B4 109 167 -57 7 1709 1145 229 67 53 chr5 147399839 147400195 -5137064 - ORR1D1 LTR MaLR -13 361 1 7 1709 253 89 35 35 chr5 147400208 147400266 -5136993 + (CAGAGA)n Simple_repeat Simple_repeat 3 60 0 7 1709 250 279 22 44 chr5 147400447 147400537 -5136722 + MTEb LTR MaLR 290 377 -2 7 1709 943 229 0 57 chr5 147401797 147402024 -5135235 - B3 SINE B2 -2 214 1 7 1709 866 312 143 13 chr5 147402959 147403489 -5133770 + L1MC2 LINE L1 5720 6318 -26 7 1709 561 158 0 0 chr5 147403593 147403713 -5133546 + (CA)n Simple_repeat Simple_repeat 2 121 0 7 1709 1227 159 22 9 chr5 147404030 147404252 -5133007 + URR1B DNA MER1_type 1 225 0 7 1709 2443 170 114 81 chr5 147404775 147405356 -5131903 - RMER19C LTR ERVK 0 611 12 7 1709 1488 167 40 196 chr5 147405614 147406069 -5131190 + ORR1C2 LTR MaLR 1 384 0 7 1709 234 244 0 0 chr5 147406539 147406584 -5130675 + B4A SINE B4 18 62 -230 7 1709 385 273 72 0 chr5 147406586 147406725 -5130534 + Lx8 LINE L1 6360 6508 -965 7 1709 795 122 106 0 chr5 147407322 147407445 -5129814 - B1_Mur1 SINE Alu -5 144 9 7 1709 279 0 0 0 chr5 147407455 147407486 -5129773 + (TG)n Simple_repeat Simple_repeat 2 32 0 7 1709 38 0 0 0 chr5 147407490 147407528 -5129731 + AT_rich Low_complexity Low_complexity 1 38 0 7 1709 28 0 0 0 chr5 147407584 147407612 -5129647 + AT_rich Low_complexity Low_complexity 1 28 0 7 1709 30 45 0 0 chr5 147407649 147407693 -5129566 + AT_rich Low_complexity Low_complexity 1 44 0 7 1709 722 197 16 0 chr5 147407707 147407829 -5129430 - B1_Mur1 SINE Alu -7 142 19 7 1709 866 255 5 10 chr5 147407886 147408088 -5129171 - B3 SINE B2 -1 215 15 7 1709 996 267 32 14 chr5 147408915 147408983 -5128276 - B4 SINE B4 -2 290 223 7 1709 360 0 0 0 chr5 147408983 147409023 -5128236 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 7 1709 996 267 32 14 chr5 147409023 147409239 -5128020 - B4 SINE B4 -70 222 1 7 1709 368 252 26 17 chr5 147409330 147409447 -5127812 - L1MB3 LINE L1 -205 5978 5861 7 1709 363 167 0 0 chr5 147409479 147409545 -5127714 + (TA)n Simple_repeat Simple_repeat 2 67 0 7 1709 1078 151 9 77 chr5 147409589 147409811 -5127448 - B3 SINE B2 -9 207 1 7 1709 637 329 123 2 chr5 147409849 147410248 -5127011 - L1MB3 LINE L1 -49 6134 5688 7 1709 380 350 38 24 chr5 147410887 147411098 -5126161 + RMER15 LTR ERVL 347 560 -15 7 1709 556 318 40 35 chr5 147411412 147411640 -5125619 + MER46C DNA MER2_type 110 338 0 7 1709 334 319 51 8 chr5 147412116 147412233 -5125026 - MLT1A1 LTR MaLR -267 141 20 7 1709 486 284 70 12 chr5 147412610 147412778 -5124481 - RMER15 LTR ERVL 0 575 398 7 1709 293 158 34 34 chr5 147412778 147412837 -5124422 + B1_Mus2 SINE Alu 1 59 -88 7 1709 250 197 62 100 chr5 147412917 147413047 -5124212 + RLTR25B LTR ERVK 397 521 -507 7 1709 640 160 19 9 chr5 147412961 147413068 -5124191 + B1_Mur2 SINE Alu 42 149 0 7 1709 2012 146 41 77 chr5 147413235 147413627 -5123632 - ORR1C1 LTR MaLR 0 378 1 7 1709 191 349 85 8 chr5 147414252 147414382 -5122877 + L2c LINE L2 3069 3208 -179 7 1709 1055 238 127 47 chr5 147415946 147416285 -5120974 + RMER10B LTR ERVL 1 366 -32 7 1709 273 197 0 0 chr5 147416631 147416692 -5120567 + CT-rich Low_complexity Low_complexity 4 64 0 7 1709 282 288 0 0 chr5 147416784 147416850 -5120409 - B4A SINE B4 -224 68 3 7 1709 319 312 26 35 chr5 147416900 147417013 -5120246 + LTR48 LTR ERV1 5 116 -528 7 1709 185 119 24 0 chr5 147417070 147417112 -5120147 + (TA)n Simple_repeat Simple_repeat 2 44 0 7 1709 391 241 24 12 chr5 147417174 147417342 -5119917 + (CATATA)n Simple_repeat Simple_repeat 3 172 0 7 1709 511 264 92 11 chr5 147417342 147417526 -5119733 + LTR48 LTR ERV1 547 745 -42 7 1709 1573 173 176 0 chr5 147417835 147418165 -5119094 + MTD LTR MaLR 15 402 -17 7 1709 2977 70 39 3 chr5 147419017 147419403 -5117856 + MTB LTR MaLR 1 400 0 7 1709 180 0 0 0 chr5 147419831 147419851 -5117408 + (TAA)n Simple_repeat Simple_repeat 1 20 0 7 1709 273 315 79 51 chr5 147419959 147420213 -5117046 + L1MEc LINE L1 1454 1714 -4701 7 1709 235 266 113 31 chr5 147420443 147420540 -5116719 - B3 SINE B2 -7 209 105 7 1709 433 298 38 38 chr5 147420653 147420890 -5116369 + L1MEc LINE L1 1945 2181 -4219 7 1709 324 83 0 0 chr5 147421718 147421766 -5115493 + (T)n Simple_repeat Simple_repeat 1 48 0 7 1709 1267 14 7 0 chr5 147421769 147421914 -5115345 - B1_Mus2 SINE Alu 0 147 2 7 1709 257 316 26 0 chr5 147421997 147422073 -5115186 - MLT1C LTR MaLR -379 88 11 7 1709 463 342 186 20 chr5 147423175 147423583 -5113676 + Zaphod DNA Tip100 14 489 -3542 7 1709 849 308 59 35 chr5 147423655 147424079 -5113180 + Zaphod DNA Tip100 603 1036 -2995 7 1709 183 129 0 0 chr5 147424093 147424124 -5113135 + (GGGAGA)n Simple_repeat Simple_repeat 3 33 0 7 1709 657 283 54 22 chr5 147424151 147424335 -5112924 + B3A SINE B2 8 197 -1 7 1709 363 23 0 0 chr5 147425079 147425123 -5112136 + (CA)n Simple_repeat Simple_repeat 2 45 0 7 1709 845 245 104 161 chr5 147425174 147425529 -5111730 - ORR1D2 LTR MaLR -35 335 1 8 1709 4706 113 33 8 chr5 147425713 147426447 -5110812 + RMER6A LTR ERVK 1 752 -4 8 1709 436 169 16 31 chr5 147427201 147427329 -5109930 + C-rich Low_complexity Low_complexity 2 127 0 8 1709 344 175 0 0 chr5 147427423 147427480 -5109779 - HAL1-3A_ME LINE L1 -827 2031 1975 8 1709 710 216 0 6 chr5 147427485 147427662 -5109597 + (TATG)n Simple_repeat Simple_repeat 4 179 0 8 1709 23 0 0 0 chr5 147427780 147427803 -5109456 + AT_rich Low_complexity Low_complexity 1 23 0 8 1709 390 135 178 50 chr5 147427892 147427993 -5109266 + B1_Mus1 SINE Alu 2 115 -34 8 1709 315 217 31 77 chr5 147427993 147428022 -5109237 + B4 SINE B4 87 210 -82 8 1709 356 76 0 96 chr5 147428042 147428115 -5109144 + B1_Mur4 SINE Alu 74 139 -11 8 1709 389 20 20 0 chr5 147428115 147428165 -5109094 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 8 1709 191 135 54 0 chr5 147428206 147428243 -5109016 - L3 LINE CR1 -3534 955 917 8 1709 212 122 24 0 chr5 147428446 147428487 -5108772 + (TG)n Simple_repeat Simple_repeat 1 42 0 8 1709 279 330 117 43 chr5 147428524 147428538 -5108721 + MT2A LTR ERVL 1 54 -479 8 1709 695 228 64 6 chr5 147428538 147428710 -5108549 + MTE2a LTR MaLR 19 200 -179 8 1709 279 330 117 43 chr5 147428710 147428755 -5108504 + MT2A LTR ERVL 55 248 -285 8 1709 526 254 84 8 chr5 147429339 147429470 -5107789 - B1F1 SINE Alu -6 143 3 8 1709 927 265 192 74 chr5 147429522 147430023 -5107236 + RMER4B LTR ERVK 17 576 -9 8 1709 540 225 5 0 chr5 147430390 147430611 -5106648 + (CA)n Simple_repeat Simple_repeat 1 222 0 8 1709 258 32 0 0 chr5 147430659 147430690 -5106569 + (CA)n Simple_repeat Simple_repeat 1 31 0 8 1709 390 260 167 27 chr5 147430690 147430840 -5106419 + MER70A LTR ERVL 49 219 -359 8 1709 2239 189 25 15 chr5 147430880 147431277 -5105982 + MTD LTR MaLR 5 405 -14 8 1709 1224 88 64 27 chr5 147431286 147431473 -5105786 + B2_Mm2 SINE B2 2 195 0 8 1709 300 263 31 31 chr5 147431530 147431628 -5105631 - MLT1A1 LTR MaLR -5 403 306 8 1709 491 281 163 6 chr5 147431969 147432141 -5105118 + MER70A LTR ERVL 269 467 -5 8 1709 1173 36 0 0 chr5 147432249 147432386 -5104873 + B1_Mus2 SINE Alu 2 138 -9 8 1709 282 29 0 0 chr5 147432386 147432421 -5104838 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 8 1709 956 125 267 0 chr5 147432431 147432607 -5104652 + URR1A DNA MER1_type 4 226 0 8 1709 217 77 36 71 chr5 147433128 147433184 -5104075 + (GTTTG)n Simple_repeat Simple_repeat 5 58 0 8 1709 595 160 0 36 chr5 147433185 147433302 -5103957 - PB1D7 SINE Alu 0 120 10 8 1709 363 273 67 101 chr5 147434241 147434420 -5102839 + ORR1E LTR MaLR 1 173 -186 8 1709 1269 166 5 23 chr5 147434701 147434917 -5102342 + B3 SINE B2 1 212 -4 8 1709 247 356 50 72 chr5 147436032 147436171 -5101088 + MIRb SINE MIR 112 247 -21 8 1709 490 141 52 12 chr5 147436806 147436978 -5100281 + (CA)n Simple_repeat Simple_repeat 2 180 0 8 1709 225 0 0 0 chr5 147437324 147437349 -5099910 + (CA)n Simple_repeat Simple_repeat 1 25 0 8 1709 573 110 0 42 chr5 147438036 147438117 -5099142 + B1_Mur3 SINE Alu 59 136 -13 8 1709 270 0 0 0 chr5 147438117 147438147 -5099112 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 8 1709 573 110 0 42 chr5 147438147 147438160 -5099099 + B1_Mur3 SINE Alu 137 149 0 8 1709 2037 255 48 4 chr5 147438524 147439024 -5098235 + Lx5 LINE L1 6487 7008 -42 8 1709 183 100 0 0 chr5 147439224 147439254 -5098005 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 8 1709 749 264 32 23 chr5 147439271 147439488 -5097771 - ID_B1 SINE B4 -3 221 3 8 1709 579 288 156 17 chr5 147440614 147440851 -5096408 + B4A SINE B4 2 271 -21 8 1709 36 23 0 0 chr5 147441877 147441920 -5095339 + AT_rich Low_complexity Low_complexity 1 43 0 8 1709 848 218 0 0 chr5 147443165 147443321 -5093938 - B3A SINE B2 -41 157 2 8 1709 21 0 0 0 chr5 147443675 147443696 -5093563 + AT_rich Low_complexity Low_complexity 1 21 0 8 1709 1281 104 22 5 chr5 147443757 147443941 -5093318 - B2_Mm2 SINE B2 -7 188 2 8 1709 2273 202 52 93 chr5 147444219 147444791 -5092468 - RMER15 LTR ERVL 0 575 27 8 1709 1180 81 0 13 chr5 147444920 147445070 -5092189 + B1_Mus1 SINE Alu 1 148 0 8 1709 5351 71 14 1 chr5 147445595 147446287 -5090972 - L1_Mus2 LINE L1 -1 6565 5865 8 1709 1629 98 38 0 chr5 147446287 147446523 -5090736 + L1_Mm LINE L1 5416 5660 -223 8 1709 2144 181 72 21 chr5 147446582 147447011 -5090248 - RMER20A LTR ERVK -55 461 11 8 1709 568 210 20 68 chr5 147447026 147447174 -5090085 - MERVK26-int LTR ERVK -7 6912 6772 8 1709 620 307 9 27 chr5 147447292 147447516 -5089743 - RMER17A-int LTR ERVK -239 1489 1270 8 1709 1336 232 77 70 chr5 147447662 147448237 -5089022 - RLTR20B3 LTR ERVK -27 550 24 8 1709 2548 190 38 38 chr5 147449214 147449718 -5087541 - RMER20A LTR ERVK 0 516 13 8 1709 298 352 29 1 chr5 147450588 147450752 -5086507 + Lx8 LINE L1 6962 7129 -344 8 1709 488 287 242 14 chr5 147450818 147451008 -5086251 + Lx8 LINE L1 7111 7321 -152 8 1709 657 38 0 0 chr5 147451008 147451088 -5086171 + (GGGA)n Simple_repeat Simple_repeat 2 81 0 8 1709 488 287 242 14 chr5 147451088 147451190 -5086069 + Lx8 LINE L1 7322 7470 -3 8 1709 590 295 6 37 chr5 147451643 147451805 -5085454 - B3 SINE B2 0 216 60 8 1709 279 221 111 40 chr5 147451815 147451914 -5085345 + MLT1A1 LTR MaLR 301 406 -2 8 1709 984 173 38 71 chr5 147452340 147452551 -5084708 + B3 SINE B2 1 204 -12 8 1709 381 75 0 0 chr5 147452551 147452604 -5084655 + (TAA)n Simple_repeat Simple_repeat 2 54 0 8 1709 206 118 0 0 chr5 147452649 147452683 -5084576 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 8 1709 240 355 54 18 chr5 147453948 147454060 -5083199 + MIRc SINE MIR 18 133 -135 8 1709 1105 189 14 28 chr5 147454063 147454280 -5082979 - B3 SINE B2 -2 214 1 8 1709 233 289 0 118 chr5 147455235 147455310 -5081949 + MER3 DNA MER1_type 86 154 -55 8 1709 1146 113 151 0 chr5 147455310 147455496 -5081763 - B3 SINE B2 -1 215 2 8 1709 233 289 0 118 chr5 147455496 147455530 -5081729 + MER3 DNA MER1_type 155 182 -27 8 1709 1430 55 39 0 chr5 147455712 147455893 -5081366 + B2_Mm2 SINE B2 1 188 -7 8 213 267 31 0 0 chr5 147455987 147456019 -5081240 + (CTG)n Simple_repeat Simple_repeat 1 32 0 8 1710 203 103 0 25 chr5 147456721 147456761 -5080498 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 8 1710 432 0 0 0 chr5 147457013 147457061 -5080198 + (TC)n Simple_repeat Simple_repeat 1 48 0 8 1710 952 62 11 63 chr5 147457065 147457254 -5080005 + (TCC)n Simple_repeat Simple_repeat 1 179 0 8 1710 452 235 10 0 chr5 147457256 147457354 -5079905 - ID_B1 SINE B4 -35 189 91 8 1710 292 256 23 40 chr5 147457406 147457492 -5079767 + ID_B1 SINE B4 78 157 -67 8 1710 271 333 91 0 chr5 147457578 147457743 -5079516 + L2 LINE L2 1627 1806 -1613 8 1710 2549 92 3 0 chr5 147458325 147458651 -5078608 + ORR1A2 LTR MaLR 1 327 0 8 1710 189 0 0 0 chr5 147459289 147459310 -5077949 + (T)n Simple_repeat Simple_repeat 1 21 0 8 1710 210 37 0 0 chr5 147459571 147459598 -5077661 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 8 1710 266 227 66 13 chr5 147461043 147461119 -5076140 + ID4_ SINE ID 4 83 0 8 1710 846 262 51 23 chr5 147461582 147461797 -5075462 + ID_B1 SINE B4 1 221 -3 8 1710 1977 229 22 2 chr5 147461810 147462212 -5075047 - MTD LTR MaLR -2 417 8 8 1710 21 0 0 0 chr5 147463243 147463264 -5073995 + GC_rich Low_complexity Low_complexity 1 21 0 8 1710 204 323 0 0 chr5 147463651 147463713 -5073546 + C-rich Low_complexity Low_complexity 5 66 0 8 1710 1478 51 17 0 chr5 147464195 147464372 -5072887 + B2_Mm2 SINE B2 1 180 -15 8 1710 1181 91 11 0 chr5 147464398 147464574 -5072685 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 8 1710 318 189 0 19 chr5 147466051 147466105 -5071154 + HAL1-3A_ME LINE L1 1966 2018 -840 8 1710 336 102 0 0 chr5 147466105 147466154 -5071105 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 8 1710 1507 22 44 16 chr5 147466240 147466423 -5070836 - B2_Mm2 SINE B2 -6 189 2 8 1710 737 248 165 92 chr5 147466521 147466849 -5070410 - ORR1E LTR MaLR -7 352 1 8 1710 2996 145 47 36 chr5 147467495 147467938 -5069321 + RLTR20B1 LTR ERVK 1 443 -120 8 1710 2246 89 76 0 chr5 147467938 147468242 -5069017 + ORR1A2 LTR MaLR 1 327 0 8 1710 2996 145 47 36 chr5 147468242 147468261 -5068998 + RLTR20B1 LTR ERVK 444 456 -107 8 1710 420 20 0 0 chr5 147468261 147468310 -5068949 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1710 2996 145 47 36 chr5 147468310 147468403 -5068856 + RLTR20B1 LTR ERVK 457 561 -2 8 1710 929 234 190 28 chr5 147468500 147468732 -5068527 - MTD LTR MaLR 0 419 139 8 1710 2065 105 39 74 chr5 147468732 147469070 -5068189 - ORR1A3 LTR MaLR 0 326 1 8 1710 929 234 190 28 chr5 147469070 147469127 -5068132 - MTD LTR MaLR -281 138 83 8 1710 459 286 31 75 chr5 147469144 147469323 -5067936 + B4 SINE B4 121 292 0 8 1710 1481 218 101 6 chr5 147469486 147469814 -5067445 + ORR1D2 LTR MaLR 7 365 -5 8 1710 316 295 11 0 chr5 147470076 147470171 -5067088 + MLT1A0 LTR MaLR 69 164 -201 8 1710 1121 176 21 0 chr5 147470171 147470358 -5066901 + B3 SINE B2 26 216 0 8 1710 528 283 60 7 chr5 147470485 147470663 -5066596 + MLT1A0 LTR MaLR 169 398 -10 8 1710 2462 65 3 0 chr5 147471547 147471856 -5065403 - MTB LTR MaLR -87 313 4 8 1710 3480 154 20 12 chr5 147473500 147474090 -5063169 + RLTR17 LTR ERVK 98 692 0 8 1710 1233 95 33 22 chr5 147474358 147474541 -5062718 + B2_Mm2 SINE B2 1 185 -10 8 1710 824 104 24 2 chr5 147474605 147474743 -5062516 + B2_Mm2 SINE B2 20 170 -46 8 1710 459 0 0 0 chr5 147474744 147474795 -5062464 + (TAAA)n Simple_repeat Simple_repeat 3 53 0 8 1710 517 287 77 12 chr5 147474795 147474964 -5062295 + B4A SINE B4 51 230 -62 8 1710 1163 205 5 5 chr5 147474964 147475175 -5062084 + B3 SINE B2 1 211 -5 8 1710 615 14 0 0 chr5 147475472 147475544 -5061715 + (TG)n Simple_repeat Simple_repeat 2 73 0 8 1710 624 159 159 0 chr5 147475547 147475673 -5061586 - B1_Mus1 SINE Alu -2 146 1 8 1710 581 245 24 72 chr5 147475688 147475895 -5061364 - B3A SINE B2 0 198 2 9 1710 350 306 152 69 chr5 147475905 147475998 -5061261 - LTR40b LTR ERVL -26 436 325 9 1710 1657 42 0 0 chr5 147475998 147476191 -5061068 + B2_Mm1a SINE B2 1 193 0 9 1710 350 306 152 69 chr5 147476191 147476373 -5060886 - LTR40b LTR ERVL -138 324 133 9 1710 243 0 0 0 chr5 147476373 147476400 -5060859 + (TC)n Simple_repeat Simple_repeat 2 28 0 9 1710 350 306 152 69 chr5 147476400 147476484 -5060775 - LTR40b LTR ERVL -330 132 46 9 1710 243 250 144 10 chr5 147477072 147477169 -5060090 + Charlie16a DNA MER1_type 3 112 -230 9 1710 338 307 20 0 chr5 147477464 147477565 -5059694 + PB1D10 SINE Alu 4 106 -11 9 1710 1028 97 17 11 chr5 147477569 147477747 -5059512 + (GGAGA)n Simple_repeat Simple_repeat 1 179 0 9 1710 182 222 0 31 chr5 147477755 147477820 -5059439 + GA-rich Low_complexity Low_complexity 4 66 0 9 1710 323 295 105 8 chr5 147477820 147477953 -5059306 + HAL1-3A_ME LINE L1 2294 2439 -419 9 1710 1351 98 16 0 chr5 147477981 147478164 -5059095 + B2_Mm2 SINE B2 1 186 -9 9 1710 807 21 0 0 chr5 147478190 147478287 -5058972 + (TTAGGG)n Simple_repeat Simple_repeat 4 100 0 9 1710 270 327 126 7 chr5 147478288 147478439 -5058820 - L2a LINE L2 -294 3132 2964 9 1710 776 233 35 14 chr5 147479449 147479627 -5057632 - B3 SINE B2 -2 193 2 9 1710 234 0 0 0 chr5 147479732 147479758 -5057501 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9 1710 240 35 0 0 chr5 147480127 147480156 -5057103 + (A)n Simple_repeat Simple_repeat 1 29 0 9 1710 440 259 36 54 chr5 147480482 147480649 -5056610 + RSINE1 SINE B4 2 165 0 9 1710 219 240 0 0 chr5 147480650 147480700 -5056559 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1710 477 148 0 0 chr5 147480700 147480781 -5056478 + (TA)n Simple_repeat Simple_repeat 1 81 0 9 1710 218 191 0 0 chr5 147480781 147480823 -5056436 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1710 231 244 0 0 chr5 147480841 147480919 -5056340 + (CA)n Simple_repeat Simple_repeat 1 78 0 9 1710 372 227 71 20 chr5 147480919 147480998 -5056261 + HAL1-3A_ME LINE L1 1975 2059 -799 9 1710 1112 89 0 7 chr5 147480998 147481145 -5056114 + B1_Mm SINE Alu 2 147 0 9 1710 372 227 71 20 chr5 147481145 147481164 -5056095 + HAL1-3A_ME LINE L1 2060 2078 -780 9 1710 1039 61 204 0 chr5 147481214 147481361 -5055898 + B2_Mm1t SINE B2 3 179 -14 9 1710 312 119 0 26 chr5 147481427 147481510 -5055749 + B2_Mm2 SINE B2 47 163 -32 9 1710 779 57 0 9 chr5 147481510 147481616 -5055643 + (GAA)n Simple_repeat Simple_repeat 2 106 0 9 1710 309 165 136 25 chr5 147482006 147482087 -5055172 + B3A SINE B2 1 90 -108 9 1710 1150 139 100 30 chr5 147482713 147482913 -5054346 - MTC LTR MaLR 0 421 208 9 1710 3769 91 255 79 chr5 147482915 147483683 -5053576 + RMER17A2 LTR ERVK 1 903 -3 9 1710 334 311 53 23 chr5 147483815 147483986 -5053273 - MIR SINE MIR 0 262 87 9 1710 2940 131 101 75 chr5 147483990 147484586 -5052673 - RMER19C LTR ERVK 0 611 1 9 1710 235 260 77 13 chr5 147484875 147484953 -5052306 - LTR85a LTR Gypsy? -54 648 566 9 1710 1185 174 9 32 chr5 147484970 147485190 -5052069 - B3 SINE B2 0 216 2 9 1710 1172 58 0 0 chr5 147485390 147485528 -5051731 + B1_Mus1 SINE Alu 1 138 -10 9 1710 585 0 0 0 chr5 147485530 147485595 -5051664 + (GA)n Simple_repeat Simple_repeat 2 66 0 9 1710 647 207 17 0 chr5 147485601 147485717 -5051542 + B1_Mur1 SINE Alu 32 149 0 9 1710 1216 193 5 0 chr5 147485938 147486145 -5051114 + B3 SINE B2 2 209 -7 9 1710 311 45 0 22 chr5 147486829 147486875 -5050384 + (CCCCCA)n Simple_repeat Simple_repeat 2 46 0 9 1710 802 306 54 39 chr5 147487550 147487808 -5049451 + Tigger7 DNA MER2_type 11 272 -2219 9 1710 580 296 63 55 chr5 147488020 147488384 -5048875 + L1MB3 LINE L1 5792 6158 -25 9 1710 236 30 30 0 chr5 147488665 147488698 -5048561 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 9 1710 1331 82 11 11 chr5 147489057 147489241 -5048018 - B2_Mm2 SINE B2 -9 186 3 9 1710 1130 215 5 0 chr5 147489332 147489541 -5047718 + B3 SINE B2 1 210 -6 9 1710 261 0 0 0 chr5 147489798 147489827 -5047432 + (T)n Simple_repeat Simple_repeat 1 29 0 9 1710 181 260 131 103 chr5 147491945 147492052 -5045207 + L2 LINE L2 444 553 -2866 9 1710 1219 109 93 65 chr5 147492977 147493193 -5044066 + URR1A DNA MER1_type 5 226 0 9 1710 317 217 0 28 chr5 147493396 147493467 -5043792 - ID_B1 SINE B4 -74 150 82 9 1710 203 125 0 0 chr5 147493601 147493633 -5043626 + MIRb SINE MIR 224 255 -13 9 1710 195 129 0 0 chr5 147494027 147494058 -5043201 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 9 1710 1080 0 0 0 chr5 147495805 147495925 -5041334 + (TCTCCC)n Simple_repeat Simple_repeat 4 123 0 9 1710 225 0 0 0 chr5 147497969 147497994 -5039265 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 9 1710 701 303 40 26 chr5 147498118 147498470 -5038789 + L1MB3 LINE L1 5810 6166 -17 9 1710 200 270 0 31 chr5 147498855 147498920 -5038339 + GA-rich Low_complexity Low_complexity 3 65 0 9 1710 378 42 0 0 chr5 147499123 147499171 -5038088 + (CCCCCA)n Simple_repeat Simple_repeat 6 53 0 9 1710 713 137 60 22 chr5 147500004 147500138 -5037121 + B1_Mur2 SINE Alu 11 149 0 1 1710 1162 202 0 32 chr5 147500561 147500781 -5036478 + B3 SINE B2 1 213 -3 2 1710 250 317 38 102 chr5 147501306 147501492 -5035767 + B4 SINE B4 6 179 -113 3 1710 358 260 0 38 chr5 147501528 147501608 -5035651 - B1_Mur4 SINE Alu -73 77 1 4 1710 246 264 32 75 chr5 147501529 147501623 -5035636 - MT2B2 LTR ERVL -343 241 152 5 1710 395 261 141 90 chr5 147502050 147502081 -5035178 + B4 SINE B4 63 166 -126 6 1710 588 191 0 73 chr5 147502081 147502205 -5035054 + PB1D9 SINE Alu 5 119 -1 7 1710 395 261 141 90 chr5 147502205 147502227 -5035032 + B4 SINE B4 167 248 -44 6 1710 355 286 20 0 chr5 147502227 147502325 -5034934 + GA-rich Low_complexity Low_complexity 2 101 0 8 1710 189 214 0 0 chr5 147504849 147504891 -5032368 + CT-rich Low_complexity Low_complexity 1 42 0 9 1710 441 217 0 24 chr5 147504916 147505001 -5032258 - PB1D10 SINE Alu -6 111 29 1 1710 1362 99 16 5 chr5 147505033 147505225 -5032034 - B2_Mm2 SINE B2 0 195 2 1 1710 198 136 0 0 chr5 147505397 147505441 -5031818 + (A)n Simple_repeat Simple_repeat 1 44 0 1 1710 444 191 0 56 chr5 147505461 147505550 -5031709 + PB1D10 SINE Alu 33 116 -1 1 1710 723 273 23 0 chr5 147505559 147505735 -5031524 + B3A SINE B2 3 182 -16 1 1710 204 233 0 0 chr5 147505736 147505779 -5031480 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1710 23 54 0 0 chr5 147505779 147505816 -5031443 + AT_rich Low_complexity Low_complexity 1 37 0 1 1710 22 35 0 0 chr5 147506049 147506078 -5031181 + AT_rich Low_complexity Low_complexity 1 29 0 1 1710 745 161 65 0 chr5 147506259 147506383 -5030876 + B1_Mus1 SINE Alu 11 142 -6 1 1710 2655 287 69 30 chr5 147506394 147507450 -5029809 + Lx8 LINE L1 6242 7226 -247 1 1710 1072 95 28 4 chr5 147507829 147508015 -5029244 + B2_Mm2 SINE B2 5 195 0 2 1710 369 0 0 0 chr5 147508253 147508294 -5028965 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 1710 264 378 26 20 chr5 147508531 147508645 -5028614 + MIRc SINE MIR 35 153 -123 2 1710 228 250 69 0 chr5 147508819 147508891 -5028368 - L2b LINE L2 -219 3156 3080 2 1710 189 0 0 0 chr5 147510389 147510410 -5026849 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2 1710 1221 169 40 0 chr5 147510827 147511028 -5026231 - B3 SINE B2 -2 214 6 2 1710 640 231 8 15 chr5 147511046 147511178 -5026081 - B1_Mur1 SINE Alu -7 142 12 2 1710 211 340 31 31 chr5 147511852 147511949 -5025310 + MER5A DNA MER1_type 88 184 -5 2 1710 508 171 58 75 chr5 147512695 147512832 -5024427 + B1_Mur1 SINE Alu 20 147 -2 2 1710 1485 49 11 0 chr5 147512949 147513132 -5024127 + B2_Mm1t SINE B2 2 186 -7 2 1710 702 214 7 28 chr5 147513332 147513476 -5023783 + B1_Mur2 SINE Alu 8 148 -1 3 1710 896 271 9 22 chr5 147513590 147513820 -5023439 - B4A SINE B4 -65 227 1 3 1710 565 214 9 18 chr5 147514457 147514571 -5022688 - B1_Mur1 SINE Alu -18 131 19 3 1710 311 293 7 119 chr5 147514571 147514608 -5022651 - ID_B1 SINE B4 -18 206 73 3 1710 656 72 0 0 chr5 147514851 147514934 -5022325 - B1_Mus2 SINE Alu -9 138 56 3 1710 325 153 28 0 chr5 147515207 147515279 -5021980 + GA-rich Low_complexity Low_complexity 2 75 0 3 1710 25 51 0 0 chr5 147515864 147515903 -5021356 + AT_rich Low_complexity Low_complexity 1 39 0 3 1710 1001 199 34 15 chr5 147515961 147516165 -5021094 - B3 SINE B2 -7 209 2 3 1710 404 171 12 0 chr5 147516378 147516460 -5020799 + CT-rich Low_complexity Low_complexity 4 86 0 3 1710 277 285 24 58 chr5 147516603 147516786 -5020473 - L1ME2 LINE L1 -156 6008 5833 3 1710 247 203 139 42 chr5 147516786 147516801 -5020458 - PB1 SINE Alu 0 127 114 4 1710 392 97 16 0 chr5 147516801 147516863 -5020396 + (TTA)n Simple_repeat Simple_repeat 1 63 0 4 1710 350 188 26 40 chr5 147516863 147516935 -5020324 - PB1D10 SINE Alu -11 109 33 4 1710 912 55 0 0 chr5 147517350 147517477 -5019782 + (TC)n Simple_repeat Simple_repeat 1 127 0 4 1710 198 0 0 0 chr5 147519086 147519108 -5018151 + (TG)n Simple_repeat Simple_repeat 2 23 0 4 1710 524 331 6 28 chr5 147519187 147519367 -5017892 - B4A SINE B4 -102 190 15 4 1710 539 270 0 16 chr5 147519510 147519638 -5017621 + B3 SINE B2 15 140 -76 4 1710 611 303 75 36 chr5 147519924 147520177 -5017082 + MTEa LTR MaLR 58 320 -59 4 1710 1393 176 96 7 chr5 147520515 147520795 -5016464 - MTD LTR MaLR 0 419 115 4 1710 432 0 0 0 chr5 147521205 147521253 -5016006 + (GA)n Simple_repeat Simple_repeat 2 49 0 4 1710 297 0 0 0 chr5 147521939 147521972 -5015287 + (TG)n Simple_repeat Simple_repeat 1 33 0 5 1710 1239 181 0 31 chr5 147522064 147522287 -5014972 - B3 SINE B2 0 216 1 5 1710 607 214 139 10 chr5 147522330 147522524 -5014735 - B4A SINE B4 -72 220 2 5 1710 360 318 116 24 chr5 147522545 147522826 -5014433 + MLT1A0 LTR MaLR 27 373 -35 5 1710 1107 278 43 37 chr5 147523176 147523524 -5013735 - MER74A LTR ERVL 0 558 209 5 1710 275 333 46 28 chr5 147523547 147523655 -5013604 - MER74A LTR ERVL -440 118 9 5 1710 1256 144 15 15 chr5 147525142 147525346 -5011913 + B3 SINE B2 2 205 -11 5 1710 567 140 10 38 chr5 147525749 147525864 -5011395 + B2_Mm2 SINE B2 1 113 -85 5 1710 1051 178 42 0 chr5 147525872 147526063 -5011196 + MTC LTR MaLR 1 199 -222 5 1710 1224 75 6 0 chr5 147526070 147526229 -5011030 + B2_Mm1a SINE B2 1 160 -33 5 1710 315 0 0 0 chr5 147526229 147526264 -5010995 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 5 1710 1015 146 122 20 chr5 147526267 147526463 -5010796 + MTC LTR MaLR 204 419 0 5 1710 274 326 19 48 chr5 147526814 147526917 -5010342 + ID_B1 SINE B4 76 175 -49 6 1710 372 311 19 19 chr5 147526836 147526941 -5010318 + PB1D10 SINE Alu 12 116 -1 6 1710 271 333 0 0 chr5 147526942 147527023 -5010236 + ID4 SINE ID 1 81 -2 6 1710 4141 85 73 2 chr5 147527251 147527837 -5009422 + RLTR33 LTR ERVK 62 678 0 6 1710 293 266 63 0 chr5 147527964 147528043 -5009216 - MLT2B4 LTR ERVL -109 447 364 6 1710 852 150 7 22 chr5 147528248 147528384 -5008875 + B1_Mur3 SINE Alu 1 134 -15 6 1710 1058 86 11 17 chr5 147528385 147528445 -5008814 + (GGA)n Simple_repeat Simple_repeat 1 57 0 6 1710 1389 61 0 0 chr5 147528445 147528625 -5008634 + (GAA)n Simple_repeat Simple_repeat 1 180 0 6 1710 1058 86 11 17 chr5 147528625 147528741 -5008518 + (GGA)n Simple_repeat Simple_repeat 1 118 0 6 1710 255 295 0 0 chr5 147528742 147528837 -5008422 + GA-rich Low_complexity Low_complexity 8 102 0 6 1710 1036 107 100 6 chr5 147529710 147529880 -5007379 + B2_Mm2 SINE B2 1 186 -9 7 1710 36 40 0 0 chr5 147529880 147529930 -5007329 + AT_rich Low_complexity Low_complexity 1 50 0 7 1710 617 191 0 9 chr5 147529982 147530098 -5007161 + B1_Mur3 SINE Alu 34 148 -1 7 1710 399 324 116 68 chr5 147530141 147530697 -5006562 + L1M4 LINE L1 2234 2866 -3280 7 1710 1340 162 46 0 chr5 147530706 147531006 -5006253 - MTD LTR MaLR 0 419 13 7 1710 444 271 108 24 chr5 147531062 147531244 -5006015 + L1M4b LINE L1 3900 4074 -2932 7 1710 303 187 0 0 chr5 147532654 147532761 -5004498 + T-rich Low_complexity Low_complexity 1 107 0 7 1710 1221 41 0 7 chr5 147532761 147532908 -5004351 - B1_Mm SINE Alu 0 147 2 7 1710 25 31 0 0 chr5 147532915 147532947 -5004312 + AT_rich Low_complexity Low_complexity 1 32 0 7 1710 1464 70 27 0 chr5 147532952 147533138 -5004121 + B2_Mm1a SINE B2 3 193 0 7 1710 1001 243 115 30 chr5 147533143 147533482 -5003777 + Lx8 LINE L1 6722 7089 -384 8 1710 294 29 0 0 chr5 147534456 147534491 -5002768 + (TCC)n Simple_repeat Simple_repeat 3 37 0 8 1710 1445 80 0 5 chr5 147534491 147534679 -5002580 - B2_Mm2 SINE B2 -7 188 2 8 1710 366 279 14 110 chr5 147535160 147535305 -5001954 + B3A SINE B2 68 198 0 8 1710 391 234 88 53 chr5 147535305 147535418 -5001841 + B3 SINE B2 16 132 -84 8 1710 555 220 18 39 chr5 147535511 147535546 -5001713 + ID_B1 SINE B4 50 175 -117 8 1710 948 59 0 0 chr5 147535546 147535665 -5001594 + B1_Mus1 SINE Alu 1 119 -29 8 1710 426 183 76 0 chr5 147535929 147536027 -5001232 - B1F SINE Alu -1 119 6 8 1710 247 241 105 35 chr5 147535954 147536040 -5001219 - B4A SINE B4 -125 167 76 8 1710 231 358 110 12 chr5 147536051 147536215 -5001044 - MIRb SINE MIR -82 186 7 8 1710 1405 209 157 99 chr5 147536857 147537323 -4999936 + MT2A LTR ERVL 1 493 -40 9 1710 938 187 8 8 chr5 147537324 147537702 -4999557 + (CATA)n Simple_repeat Simple_repeat 1 378 0 9 1710 279 188 0 0 chr5 147537775 147537823 -4999436 + B3A SINE B2 15 62 -136 9 1710 309 193 18 0 chr5 147538665 147538722 -4998537 - RMER17C LTR ERVK -352 58 1 9 1710 889 166 121 6 chr5 147539045 147539227 -4998032 + ORR1D1 LTR MaLR 1 203 -171 9 1710 609 147 0 81 chr5 147539229 147539340 -4997919 + B1_Mur4 SINE Alu 36 137 -13 9 1710 505 193 213 33 chr5 147539355 147539505 -4997754 + ORR1D1 LTR MaLR 196 372 -2 9 1710 249 214 71 0 chr5 147539838 147539894 -4997365 + ORR1D1 LTR MaLR 1 60 -324 9 1710 753 133 1 1 chr5 147539920 147540036 -4997223 - B1_Mus2 SINE Alu -16 131 15 9 1710 362 297 79 26 chr5 147540036 147540072 -4997187 - ID_B1 SINE B4 -16 208 49 9 1710 497 234 68 25 chr5 147540056 147540297 -4996962 + ORR1D1 LTR MaLR 43 374 0 9 1710 450 298 104 8 chr5 147540445 147540570 -4996689 - ID_B1 SINE B4 -7 217 81 9 1710 703 100 0 0 chr5 147541004 147541104 -4996155 + B1_Mus2 SINE Alu 40 139 -8 1 1710 372 104 0 0 chr5 147541105 147541172 -4996087 + (GA)n Simple_repeat Simple_repeat 2 68 0 1 1710 1229 41 7 0 chr5 147541702 147541849 -4995410 - B1_Mus1 SINE Alu 0 148 1 1 1710 673 203 83 0 chr5 147541851 147541984 -4995275 - B1_Mus1 SINE Alu 0 148 5 1 1710 299 241 57 0 chr5 147542420 147542525 -4994734 + L1M3 LINE L1 3578 3694 -2452 1 1710 2894 163 41 19 chr5 147542649 147542674 -4994585 + RLTR20B2 LTR ERVK 1 25 -535 1 1710 3477 35 2 0 chr5 147542674 147543073 -4994186 - MTB LTR MaLR 0 400 1 1 1710 2894 163 41 19 chr5 147543073 147543561 -4993698 + RLTR20B2 LTR ERVK 26 524 -36 1 1710 282 321 74 9 chr5 147543564 147543781 -4993478 + L1M3 LINE L1 3696 3926 -2214 1 1710 468 306 51 5 chr5 147543799 147543996 -4993263 + L1M3 LINE L1 3981 4186 -1954 1 1710 218 242 61 0 chr5 147544473 147544539 -4992720 + PB1D10 SINE Alu 48 117 0 1 1710 204 40 0 0 chr5 147545919 147545944 -4991315 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 1 1710 749 212 62 41 chr5 147546416 147546643 -4990616 - MIRb SINE MIR -2 266 33 1 1710 623 236 191 12 chr5 147550235 147550515 -4986744 + ORR1D1 LTR MaLR 11 365 -13 1 1710 22 35 0 0 chr5 147550812 147550841 -4986418 + AT_rich Low_complexity Low_complexity 1 29 0 1 1710 343 266 9 9 chr5 147550841 147550855 -4986404 - B3A SINE B2 -27 171 158 1 1710 333 0 0 0 chr5 147550855 147550892 -4986367 + (CA)n Simple_repeat Simple_repeat 1 37 0 1 1710 343 266 9 9 chr5 147550892 147550991 -4986268 - B3A SINE B2 -41 157 59 1 1710 240 297 16 0 chr5 147551026 147551090 -4986169 + ID4 SINE ID 5 69 -14 1 1710 244 263 222 40 chr5 147551564 147551663 -4985596 + PB1D10 SINE Alu 1 117 0 1 1710 955 196 6 0 chr5 147551668 147551831 -4985428 + B3 SINE B2 1 164 -52 1 1710 275 222 32 0 chr5 147552127 147552190 -4985069 + MMAR1 DNA Mariner 1 65 -1221 1 1710 715 132 42 34 chr5 147552206 147552324 -4984935 - B1_Mur4 SINE Alu -25 125 7 1 1710 1855 239 309 58 chr5 147552321 147553265 -4983994 + MMAR1 DNA Mariner 64 1244 -42 1 1710 4550 10 0 0 chr5 147553309 147553802 -4983457 + MT2_Mm LTR ERVL 1 493 0 1 1710 32853 12 6 0 chr5 147553802 147559128 -4978131 + MERVL-int LTR ERVL 1 5360 -125 1 1710 399 167 46 35 chr5 147559128 147559215 -4978044 + ORR1A3-int LTR MaLR 553 640 -1323 1 1710 305 0 0 0 chr5 147559215 147559253 -4978006 + MERVL-int LTR ERVL 5448 5485 0 1 1710 4450 10 12 0 chr5 147559253 147559740 -4977519 + MT2_Mm LTR ERVL 1 493 0 1 1710 360 212 12 0 chr5 147559753 147559833 -4977426 - Lx7 LINE L1 -985 6711 6631 1 1710 4386 116 42 60 chr5 147560522 147561292 -4975967 + RMER6A LTR ERVK 1 756 0 1 1710 324 307 97 0 chr5 147561704 147561818 -4975441 + L1MC4 LINE L1 7242 7366 -676 1 1710 445 284 158 18 chr5 147561959 147562215 -4975044 + MER68 LTR ERVL 184 507 -56 1 1710 389 305 17 132 chr5 147562429 147562603 -4974656 + B4A SINE B4 2 155 -137 1 1710 416 245 85 0 chr5 147562549 147562655 -4974604 + B1F2 SINE Alu 14 128 -21 1 1710 374 284 30 108 chr5 147562687 147562853 -4974406 + B4A SINE B4 130 282 -10 1 1710 216 0 0 0 chr5 147562866 147562890 -4974369 + (CA)n Simple_repeat Simple_repeat 1 24 0 1 1710 438 75 0 0 chr5 147562890 147562957 -4974302 + (GA)n Simple_repeat Simple_repeat 1 67 0 1 1710 429 20 0 0 chr5 147563209 147563259 -4974000 + (GGGA)n Simple_repeat Simple_repeat 1 50 0 1 1710 1893 88 84 0 chr5 147565062 147565347 -4971912 + ORR1A2 LTR MaLR 1 309 -18 1 1710 314 191 103 0 chr5 147566977 147567045 -4970214 + ID4 SINE ID 3 77 -6 1 1710 429 169 0 0 chr5 147567047 147567130 -4970129 + (CA)n Simple_repeat Simple_repeat 2 84 0 1 1710 425 260 20 0 chr5 147568339 147568439 -4968820 - PB1D7 SINE Alu -15 105 4 1 1710 314 282 84 17 chr5 147569506 147569625 -4967634 + B1F SINE Alu 2 128 -21 1 1710 261 83 0 0 chr5 147570471 147570507 -4966752 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1 1710 5047 62 0 0 chr5 147571042 147571703 -4965556 + L1_Mm LINE L1 4633 5293 -590 1 1710 1114 21 7 78 chr5 147571915 147572068 -4965191 + B1_Mm SINE Alu 3 144 -3 1 1710 252 0 0 0 chr5 147572068 147572096 -4965163 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1 1710 420 37 0 0 chr5 147572728 147572782 -4964477 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1710 264 59 0 0 chr5 147572782 147572815 -4964444 + (TG)n Simple_repeat Simple_repeat 1 34 0 1 1710 189 0 0 0 chr5 147572879 147572900 -4964359 + (T)n Simple_repeat Simple_repeat 1 21 0 1 1710 850 47 0 0 chr5 147572900 147573006 -4964253 - B1_Mus2 SINE Alu 0 147 42 1 1710 273 178 112 56 chr5 147572943 147573050 -4964209 - RLTR25B LTR ERVK -519 509 397 1 1710 427 67 0 32 chr5 147573076 147573138 -4964121 - B1_Mur4 SINE Alu -90 60 1 1 1710 323 136 0 74 chr5 147573138 147573154 -4964105 - B4 SINE B4 -148 144 72 1 1710 887 161 7 14 chr5 147573776 147573921 -4963338 + B1_Mur4 SINE Alu 7 150 0 1 1710 195 42 0 0 chr5 147574115 147574139 -4963120 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1710 236 329 43 0 chr5 147574175 147574245 -4963014 - PB1D10 SINE Alu -33 84 12 1 1710 243 79 0 0 chr5 147574665 147574703 -4962556 + (A)n Simple_repeat Simple_repeat 1 38 0 1 1710 954 114 42 14 chr5 147575151 147575293 -4961966 + B1_Mus2 SINE Alu 1 146 -1 1 1710 2670 125 22 2 chr5 147576330 147576739 -4960520 - MTC LTR MaLR 0 421 5 1 1710 1719 120 92 54 chr5 147576916 147577233 -4960026 + ORR1A4 LTR MaLR 1 329 0 1 1710 396 0 0 0 chr5 147577233 147577277 -4959982 + (CA)n Simple_repeat Simple_repeat 2 45 0 1 1710 721 148 3 26 chr5 147577288 147577416 -4959843 - B1_Mur2 SINE Alu -20 129 1 1 1710 1215 103 5 61 chr5 147577433 147577630 -4959629 + B2_Mm2 SINE B2 1 186 -9 1 1710 238 326 0 85 chr5 147577630 147577717 -4959542 - B3A SINE B2 -68 130 50 1 1710 989 244 14 5 chr5 147578356 147578570 -4958689 - B3 SINE B2 0 216 1 1 1710 1392 88 0 6 chr5 147580746 147580928 -4956331 - B2_Mm2 SINE B2 -14 181 1 1 1710 396 71 0 0 chr5 147581087 147581143 -4956116 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 1 1710 186 43 0 0 chr5 147581375 147581398 -4955861 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 1 1710 25 0 0 0 chr5 147581576 147581601 -4955658 + AT_rich Low_complexity Low_complexity 1 25 0 1 1710 643 222 55 70 chr5 147581602 147581801 -4955458 - B3A SINE B2 -2 196 1 1 1710 204 40 0 0 chr5 147582055 147582080 -4955179 + (CCCCCA)n Simple_repeat Simple_repeat 2 26 0 1 1710 752 125 114 24 chr5 147582446 147582569 -4954690 + B1_Mur4 SINE Alu 2 135 -15 1 1710 47 0 0 0 chr5 147584036 147584083 -4953176 + AT_rich Low_complexity Low_complexity 1 47 0 1 1710 316 153 73 0 chr5 147584091 147584155 -4953104 - B2_Mm2 SINE B2 -83 115 43 1 1710 1341 85 11 0 chr5 147584164 147584340 -4952919 - B2_Mm1t SINE B2 -14 179 2 1 1710 418 246 14 131 chr5 147584460 147584605 -4952654 + B1_Mur2 SINE Alu 17 144 -5 1 1710 215 125 25 0 chr5 147584606 147584646 -4952613 + (GGA)n Simple_repeat Simple_repeat 2 42 0 1 1710 464 150 69 20 chr5 147585011 147585113 -4952146 + RMER19B LTR ERVK 1 107 -795 1 1710 793 273 32 35 chr5 147585391 147585676 -4951583 - Lx9 LINE L1 -178 7466 7183 1 1710 2327 210 68 4 chr5 147585678 147586165 -4951094 + RLTR12B LTR ERVK 11 528 0 1 1710 1230 265 174 33 chr5 147586165 147586704 -4950555 - Lx9 LINE L1 -475 7169 6555 1 213 568 235 25 62 chr5 147586929 147587108 -4950151 + B3A SINE B2 37 212 -4 1 1711 362 172 10 29 chr5 147587474 147587576 -4949683 + G-rich Low_complexity Low_complexity 3 102 0 1 1711 322 230 76 42 chr5 147587855 147587973 -4949286 + L1MC4 LINE L1 7224 7345 -697 1 1711 395 232 19 20 chr5 147587990 147588109 -4949150 + L1MC4 LINE L1 7446 7580 -462 1 1711 544 244 105 179 chr5 147589188 147589284 -4947975 + B4 SINE B4 2 84 -208 1 1711 684 165 57 50 chr5 147589284 147589424 -4947835 + B1_Mur2 SINE Alu 1 141 -8 1 1711 544 244 105 179 chr5 147589424 147589612 -4947647 + B4 SINE B4 85 265 -27 1 1711 237 65 0 0 chr5 147589625 147589656 -4947603 + (CACG)n Simple_repeat Simple_repeat 1 31 0 1 1711 367 39 0 103 chr5 147590577 147590635 -4946624 - B1_Mus2 SINE Alu 0 150 96 1 1711 1207 42 7 0 chr5 147590694 147590836 -4946423 + B1_Mus1 SINE Alu 1 143 -5 1 1711 568 235 151 16 chr5 147590907 147591003 -4946256 + B3 SINE B2 1 101 -115 1 1711 267 31 0 0 chr5 147591003 147591035 -4946224 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1711 568 235 151 16 chr5 147591035 147591124 -4946135 + B3 SINE B2 102 211 -5 1 1711 417 236 54 18 chr5 147591157 147591269 -4945990 + PB1D7 SINE Alu 1 116 -4 1 1711 437 246 98 15 chr5 147591345 147591477 -4945782 - MTEa LTR MaLR -236 143 1 1 1711 715 262 41 51 chr5 147591596 147591889 -4945370 + B4A SINE B4 3 292 0 1 1711 320 256 111 0 chr5 147591906 147591996 -4945263 + PB1 SINE Alu 3 102 -25 1 1711 349 307 98 39 chr5 147592040 147592294 -4944965 + L1MB8 LINE L1 3732 4000 -2146 1 1711 445 328 44 88 chr5 147592297 147592546 -4944713 + B4 SINE B4 9 243 -49 1 1711 237 33 0 0 chr5 147592546 147592576 -4944683 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1711 445 328 44 88 chr5 147592576 147592623 -4944636 + B4 SINE B4 244 291 -1 1 1711 1240 75 0 6 chr5 147592658 147592820 -4944439 + B2_Mm2 SINE B2 2 162 -33 1 1711 180 0 0 0 chr5 147592820 147592840 -4944419 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1 1711 482 249 116 19 chr5 147593181 147593372 -4943887 + L1MB8 LINE L1 4551 4759 -1387 1 1711 393 335 68 0 chr5 147593707 147593883 -4943376 + L1MB8 LINE L1 5726 5913 -265 1 1711 321 215 59 101 chr5 147594028 147594147 -4943112 + PB1D10 SINE Alu 1 114 -3 1 1711 386 221 20 50 chr5 147594175 147594275 -4942984 + ID_B1 SINE B4 125 221 -3 1 1711 373 161 245 11 chr5 147595147 147595241 -4942018 + PB1D9 SINE Alu 3 118 -2 1 1711 847 244 66 5 chr5 147595280 147595478 -4941781 - B3 SINE B2 -6 210 1 1 1711 311 295 25 4 chr5 147595732 147595838 -4941421 + B3A SINE B2 108 214 -2 1 1711 837 95 0 60 chr5 147595835 147595969 -4941290 + B1_Mus1 SINE Alu 7 132 -16 1 1711 359 295 170 85 chr5 147596325 147596625 -4940634 + MLT1E2 LTR MaLR 2 322 -183 1 1711 180 0 0 0 chr5 147596625 147596645 -4940614 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1 1711 301 295 170 85 chr5 147596645 147596674 -4940585 + MLT1E2 LTR MaLR 323 358 -147 1 1711 827 182 28 0 chr5 147596976 147597119 -4940140 + B1_Mur3 SINE Alu 2 148 -1 2 1711 294 143 0 0 chr5 147597132 147597181 -4940078 + (GGA)n Simple_repeat Simple_repeat 3 51 0 2 1711 956 197 80 35 chr5 147597436 147597636 -4939623 + B3 SINE B2 2 210 -6 2 1711 499 275 56 14 chr5 147598006 147598150 -4939109 + ID_B1 SINE B4 2 151 -73 2 1711 505 282 80 7 chr5 147598157 147598307 -4938952 + RSINE1 SINE B4 5 165 0 2 1711 216 86 0 0 chr5 147598494 147598529 -4938730 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2 1711 693 120 0 49 chr5 147598720 147598843 -4938416 + PB1D9 SINE Alu 3 119 -1 2 1711 359 237 48 58 chr5 147598993 147599096 -4938163 - PB1D10 SINE Alu -11 106 5 2 1711 189 107 0 0 chr5 147599634 147599662 -4937597 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 2 1711 368 247 0 72 chr5 147600634 147600717 -4936542 + RSINE1 SINE B4 3 79 -86 2 1711 898 158 152 10 chr5 147601488 147601686 -4935573 + URR1A DNA MER1_type 1 226 0 2 1711 321 269 108 42 chr5 147601906 147602026 -4935233 + RCHARR1 DNA MER1_type 3 130 -844 2 1711 300 137 0 0 chr5 147602067 147602118 -4935141 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 2 1711 563 206 43 14 chr5 147602160 147602298 -4934961 + RCHARR1 DNA MER1_type 531 672 -302 2 1711 627 286 10 19 chr5 147603588 147603761 -4933498 + ID_B1 SINE B4 81 251 -41 2 1711 639 113 109 19 chr5 147604333 147604455 -4932804 - B1_Mm SINE Alu -1 148 5 2 1711 197 276 143 13 chr5 147604669 147604746 -4932513 + L2b LINE L2 3288 3374 -1 2 1711 228 35 0 0 chr5 147605099 147605128 -4932131 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 1711 318 194 0 101 chr5 147605826 147605975 -4931284 + (CCCCAG)n Simple_repeat Simple_repeat 5 138 0 2 1711 23 86 0 0 chr5 147606126 147606184 -4931075 + GC_rich Low_complexity Low_complexity 1 58 0 2 1711 24 53 0 0 chr5 147606264 147606302 -4930957 + GC_rich Low_complexity Low_complexity 1 38 0 2 1711 268 232 19 37 chr5 147606314 147606475 -4930784 + (CCG)n Simple_repeat Simple_repeat 2 159 0 2 1711 296 236 0 11 chr5 147606400 147606494 -4930765 + C-rich Low_complexity Low_complexity 4 96 0 2 1711 411 216 0 0 chr5 147607797 147607871 -4929388 + ID_B1 SINE B4 151 224 0 2 1711 550 266 14 20 chr5 147607891 147608037 -4929222 + B1_Mur1 SINE Alu 5 149 0 2 1711 747 164 108 68 chr5 147608188 147608396 -4928863 - B3 SINE B2 -1 215 5 2 1711 2006 115 70 18 chr5 147608629 147608956 -4928303 - ORR1B1 LTR MaLR -8 386 43 2 1711 259 270 0 16 chr5 147608965 147609029 -4928230 - ID4 SINE ID -16 67 5 2 1711 1114 131 51 0 chr5 147609141 147609316 -4927943 - B2_Mm2 SINE B2 -11 184 1 2 1711 303 223 108 72 chr5 147609347 147609458 -4927801 + BC1_Mm scRNA scRNA 1 115 -37 2 1711 396 0 0 0 chr5 147609509 147609553 -4927706 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2 1711 233 291 24 163 chr5 147610448 147610571 -4926688 - LTR85c LTR Gypsy? -272 551 446 2 1711 408 125 0 0 chr5 147610939 147611003 -4926256 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 1711 422 318 0 68 chr5 147611018 147611136 -4926123 - RSINE1 SINE B4 -53 112 3 2 1711 275 212 12 0 chr5 147611256 147611336 -4925923 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 1711 249 200 26 59 chr5 147612249 147612328 -4924931 + B1_Mm SINE Alu 73 148 -1 2 1711 619 184 143 8 chr5 147612670 147612796 -4924463 + B1_Mur2 SINE Alu 7 149 0 2 1711 2509 136 19 0 chr5 147612815 147613190 -4924069 + RLTR14 LTR ERV1 1 382 0 2 1711 2162 108 41 0 chr5 147613202 147613518 -4923741 + ORR1A4 LTR MaLR 1 329 0 2 1711 5038 164 46 19 chr5 147613518 147614490 -4922769 + ORR1A4-int LTR MaLR 1 999 -964 2 1711 434 253 98 46 chr5 147614504 147614657 -4922602 + RSINE1 SINE B4 3 163 -2 2 1711 831 175 0 14 chr5 147614791 147614930 -4922329 - B1_Mus1 SINE Alu -9 139 3 2 1711 568 247 84 0 chr5 147614931 147615085 -4922174 - RCHARR1 DNA MER1_type -306 668 502 2 1711 341 210 190 0 chr5 147615066 147615166 -4922093 - ID_B1 SINE B4 0 224 106 2 1711 270 236 0 18 chr5 147615164 147615220 -4922039 - ID4_ SINE ID -24 59 5 2 1711 1692 273 80 16 chr5 147615225 147615713 -4921546 - RCHARR1 DNA MER1_type -453 521 3 2 1711 724 146 44 44 chr5 147615781 147615917 -4921342 - B1_Mur2 SINE Alu -13 136 1 2 1711 1105 247 125 57 chr5 147616094 147616429 -4920830 - MTE2b LTR MaLR -12 367 10 2 1711 396 147 162 0 chr5 147616485 147616553 -4920706 + B1_Mur4 SINE Alu 22 100 -50 2 1711 245 111 44 0 chr5 147616554 147616599 -4920660 + G-rich Low_complexity Low_complexity 1 47 0 2 1711 288 300 96 39 chr5 147616846 147617075 -4920184 + L2b LINE L2 2918 3159 -216 2 1711 225 286 29 0 chr5 147617225 147617295 -4919964 + ID4 SINE ID 5 76 -7 2 1711 908 126 0 0 chr5 147617332 147617467 -4919792 + B1_Mus1 SINE Alu 2 136 -12 2 1711 442 280 42 27 chr5 147618117 147618326 -4918933 + B4 SINE B4 1 254 -38 2 1711 239 0 0 31 chr5 147618352 147618384 -4918875 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 2 1711 341 297 34 8 chr5 147618666 147618785 -4918474 - ORR1E LTR MaLR -218 141 20 2 1711 243 268 8 125 chr5 147618792 147618842 -4918417 + L1MB4 LINE L1 6067 6115 -65 2 1711 985 129 0 0 chr5 147618842 147618981 -4918278 - B1_Mus2 SINE Alu -8 139 1 2 1711 243 268 8 125 chr5 147618981 147619058 -4918201 + L1MB4 LINE L1 6116 6179 -1 2 1711 1242 48 0 0 chr5 147619121 147619268 -4917991 + B1_Mus2 SINE Alu 1 147 0 2 1711 264 91 0 0 chr5 147619268 147619312 -4917947 + (A)n Simple_repeat Simple_repeat 1 44 0 2 1711 1065 105 30 12 chr5 147619389 147619553 -4917706 + URR1A DNA MER1_type 58 224 -2 2 1711 773 239 22 16 chr5 147620688 147620871 -4916388 - B3 SINE B2 -6 210 27 2 1711 759 85 0 0 chr5 147620869 147620975 -4916284 - B1_Mur4 SINE Alu -21 129 24 2 1711 223 209 132 15 chr5 147620958 147621026 -4916233 - B3 SINE B2 -140 76 1 2 1711 657 241 35 21 chr5 147621113 147621257 -4916002 - RSINE1 SINE B4 -8 157 12 2 1711 487 276 59 99 chr5 147621361 147621735 -4915524 - RMER17C LTR ERVK -44 366 8 2 1711 273 376 0 0 chr5 147621856 147621949 -4915310 - ID_B1 SINE B4 -2 222 130 2 1711 817 155 27 53 chr5 147621941 147622091 -4915168 - B1_Mur4 SINE Alu 0 150 5 2 1711 473 169 0 73 chr5 147622089 147622185 -4915074 + B1_Mur1 SINE Alu 60 148 -1 2 1711 1149 63 0 0 chr5 147623025 147623167 -4914092 + B1_Mus1 SINE Alu 1 142 -6 2 1711 771 69 0 0 chr5 147623169 147623271 -4913988 + (GAAA)n Simple_repeat Simple_repeat 4 105 0 2 1711 225 0 0 0 chr5 147623416 147623441 -4913818 + (TTGG)n Simple_repeat Simple_repeat 1 25 0 2 1711 396 185 12 47 chr5 147624173 147624258 -4913001 + B1F SINE Alu 68 149 0 2 1711 1407 47 41 0 chr5 147624265 147624435 -4912824 + B2_Mm2 SINE B2 5 181 -14 2 1711 1115 44 0 29 chr5 147624881 147625021 -4912238 + B1_Mm SINE Alu 1 136 -11 2 1711 306 0 0 0 chr5 147625021 147625055 -4912204 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 2 1711 1039 235 10 0 chr5 147625073 147625273 -4911986 + B3 SINE B2 1 202 -14 2 1711 297 0 0 0 chr5 147625604 147625637 -4911622 + (GA)n Simple_repeat Simple_repeat 1 33 0 2 1711 386 284 71 45 chr5 147625639 147625794 -4911465 - B3 SINE B2 -13 203 45 2 1711 1358 79 21 0 chr5 147625889 147626078 -4911181 - B2_Mm2 SINE B2 0 195 3 2 1711 239 0 0 31 chr5 147626195 147626227 -4911032 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1711 922 150 0 20 chr5 147626237 147626387 -4910872 - B1_Mus1 SINE Alu -1 147 1 2 1711 2120 136 97 0 chr5 147626961 147627313 -4909946 - ORR1B1 LTR MaLR -8 386 1 2 1711 271 244 104 0 chr5 147627355 147627434 -4909825 + B2_Mm2 SINE B2 9 101 -97 2 1711 231 36 0 0 chr5 147627434 147627462 -4909797 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 1711 29 0 0 0 chr5 147627849 147627878 -4909381 + AT_rich Low_complexity Low_complexity 1 29 0 2 1711 861 193 0 0 chr5 147627930 147628080 -4909179 - B3 SINE B2 -66 150 1 2 1711 22 0 0 0 chr5 147628353 147628375 -4908884 + AT_rich Low_complexity Low_complexity 1 22 0 2 1711 353 160 0 5 chr5 147628381 147628446 -4908813 - B2_Mm2 SINE B2 -107 109 47 2 1711 1126 101 54 0 chr5 147628487 147628655 -4908604 - B2_Mm1t SINE B2 -14 179 3 2 1711 2477 30 10 0 chr5 147629979 147630309 -4906950 - L1Md_F3 LINE L1 0 6584 6270 2 1711 341 272 164 29 chr5 147630522 147630662 -4906597 + RSINE1 SINE B4 1 159 -6 2 1711 251 314 56 37 chr5 147630858 147631020 -4906239 + ERVL-E-int LTR ERVL 3502 3666 -2001 2 1711 393 311 106 97 chr5 147631425 147631636 -4905623 + L1MC5 LINE L1 7385 7585 -376 2 1711 1327 82 33 0 chr5 147631636 147631818 -4905441 + B2_Mm2 SINE B2 1 188 -7 2 1711 393 311 106 97 chr5 147631818 147631955 -4905304 + L1MC5 LINE L1 7586 7736 -225 2 1711 1233 112 6 17 chr5 147631958 147632139 -4905120 + B2_Mm1t SINE B2 1 179 -14 2 1711 327 103 437 0 chr5 147632218 147632305 -4904954 + B2_Mm2 SINE B2 70 194 -1 2 1711 444 117 0 0 chr5 147632659 147632736 -4904523 + (TCC)n Simple_repeat Simple_repeat 2 78 0 2 1711 959 139 0 7 chr5 147632749 147632761 -4904498 - B1_Mus2 SINE Alu -1 146 136 2 1711 615 62 0 0 chr5 147632761 147632841 -4904418 + (TCTTG)n Simple_repeat Simple_repeat 1 80 0 2 1711 959 139 0 7 chr5 147632841 147632973 -4904286 - B1_Mus2 SINE Alu -12 135 4 2 1711 279 279 82 46 chr5 147634185 147634262 -4902997 + L1M4c LINE L1 958 1033 -5871 2 1711 1049 166 32 5 chr5 147634262 147634450 -4902809 + B2_Mm1t SINE B2 1 193 0 2 1711 246 278 90 51 chr5 147634450 147634557 -4902702 + L1M4c LINE L1 940 1055 -5811 2 1711 351 288 278 32 chr5 147634773 147635192 -4902067 + L1M4c LINE L1 1261 1830 -5178 2 1711 250 200 0 0 chr5 147635193 147635238 -4902021 + ID_B1 SINE B4 122 166 -58 2 1711 503 231 8 0 chr5 147635286 147635420 -4901839 + GA-rich Low_complexity Low_complexity 2 136 0 3 1711 828 142 17 8 chr5 147635426 147635573 -4901686 + B2_Mm2 SINE B2 3 164 -52 3 1711 803 244 18 0 chr5 147635601 147635769 -4901490 + B3A SINE B2 2 172 -26 3 1711 754 236 31 6 chr5 147635921 147636083 -4901176 + B3A SINE B2 27 192 -6 3 1711 536 280 42 57 chr5 147636125 147636318 -4900941 + MTEa LTR MaLR 183 372 -7 3 1711 261 0 0 0 chr5 147636862 147636891 -4900368 + (TC)n Simple_repeat Simple_repeat 2 30 0 3 1711 459 155 0 0 chr5 147636891 147636975 -4900284 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 1711 1215 41 0 7 chr5 147637032 147637179 -4900080 - B1_Mus2 SINE Alu 0 147 2 3 1711 602 60 0 12 chr5 147637217 147637301 -4899958 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 3 1711 1071 37 50 29 chr5 147637301 147637440 -4899819 - B1_Mus2 SINE Alu -3 144 3 3 1711 252 0 0 0 chr5 147637596 147637624 -4899635 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1711 297 205 101 13 chr5 147637670 147637749 -4899510 - MTEa LTR MaLR 0 379 294 3 1711 399 98 0 0 chr5 147637797 147637858 -4899401 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 1711 363 222 11 49 chr5 147637874 147637977 -4899282 - B4 SINE B4 -67 98 1 3 1711 668 275 44 22 chr5 147637977 147638152 -4899107 - MTEa LTR MaLR -200 179 1 3 1711 288 309 44 26 chr5 147638855 147638968 -4898291 + PB1D10 SINE Alu 1 115 -2 3 1711 225 0 0 0 chr5 147638975 147639000 -4898259 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1711 1168 68 0 7 chr5 147639000 147639149 -4898110 - B1_Mus1 SINE Alu 0 148 1 3 1711 208 135 0 0 chr5 147639163 147639200 -4898059 + (A)n Simple_repeat Simple_repeat 1 37 0 3 1711 1015 88 0 45 chr5 147639327 147639481 -4897778 + B1_Mus1 SINE Alu 1 147 -1 3 1711 1527 53 37 0 chr5 147639529 147639717 -4897542 + B2_Mm2 SINE B2 1 195 0 3 1711 879 143 7 26 chr5 147639909 147640060 -4897199 - B1_Mur3 SINE Alu 0 149 2 3 1711 900 219 102 0 chr5 147640259 147640455 -4896804 + B3 SINE B2 1 216 0 3 1711 24 32 0 0 chr5 147640456 147640487 -4896772 + AT_rich Low_complexity Low_complexity 1 31 0 3 1711 1317 89 16 16 chr5 147640500 147640693 -4896566 + B2_Mm2 SINE B2 3 195 0 3 1711 316 254 45 0 chr5 147640722 147640789 -4896470 - RMER15 LTR ERVL 0 575 506 3 1711 1265 14 0 20 chr5 147640789 147640939 -4896320 + B1_Mus2 SINE Alu 1 147 0 3 1711 279 238 79 0 chr5 147641648 147641711 -4895548 + ID4 SINE ID 2 69 -14 3 1711 261 323 174 15 chr5 147641718 147641850 -4895409 + B4 SINE B4 72 224 -68 3 1711 527 252 0 0 chr5 147641740 147641851 -4895408 + PB1D9 SINE Alu 10 120 0 3 1711 409 266 11 11 chr5 147641904 147641999 -4895260 + PB1 SINE Alu 30 124 -3 3 1711 317 217 41 0 chr5 147642326 147642406 -4894853 + L1ME1 LINE L1 5798 5880 -479 3 1711 369 43 0 0 chr5 147642406 147642453 -4894806 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1711 233 306 14 14 chr5 147642526 147642599 -4894660 + ID4 SINE ID 2 74 -9 3 1711 306 360 36 16 chr5 147642651 147642843 -4894416 + L1ME1 LINE L1 5962 6157 -7 3 1711 225 0 0 0 chr5 147642887 147642912 -4894347 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 1711 429 271 55 35 chr5 147643102 147643247 -4894012 + B1_Mur1 SINE Alu 2 149 0 3 1711 186 43 0 0 chr5 147643417 147643440 -4893819 + (T)n Simple_repeat Simple_repeat 1 23 0 3 1711 1114 48 14 14 chr5 147643440 147643587 -4893672 - B1_Mus2 SINE Alu 0 147 1 3 1711 327 164 34 78 chr5 147644318 147644449 -4892810 - B1F SINE Alu -3 308 95 3 1711 359 283 29 39 chr5 147646204 147646307 -4890952 + PB1D9 SINE Alu 1 102 -18 3 1711 925 104 97 0 chr5 147648626 147648760 -4888499 - B1_Mus1 SINE Alu -1 147 1 3 1711 667 184 35 28 chr5 147649156 147649301 -4887958 - B1_Mur3 SINE Alu -2 147 2 3 1711 1014 66 73 0 chr5 147649355 147649492 -4887767 - B1_Mus2 SINE Alu 0 147 1 3 1711 234 204 0 0 chr5 147649898 147649942 -4887317 - URR1B DNA MER1_type -181 44 1 3 1711 303 202 246 0 chr5 147650098 147650191 -4887068 + B3 SINE B2 1 98 -97 3 1711 598 156 144 30 chr5 147650264 147650396 -4886863 + B1_Mur3 SINE Alu 3 149 0 3 1711 1028 51 51 14 chr5 147650443 147650581 -4886678 + B2_Mm2 SINE B2 1 143 -52 3 1711 849 65 137 0 chr5 147650602 147650726 -4886533 + B1_Mus2 SINE Alu 3 143 -4 3 1711 360 340 126 28 chr5 147650881 147651210 -4886049 + L2a LINE L2 2884 3243 -183 3 1711 479 155 125 33 chr5 147651970 147652090 -4885169 + B1_Mus2 SINE Alu 17 147 0 3 1711 324 281 56 168 chr5 147652090 147652184 -4885075 + B4 SINE B4 102 291 -1 3 1711 1353 91 11 0 chr5 147652213 147652399 -4884860 + B2_Mm1t SINE B2 2 189 -4 3 1711 619 164 117 33 chr5 147652704 147652824 -4884435 + B1_Mus1 SINE Alu 13 142 -6 3 1711 897 114 260 11 chr5 147653350 147653527 -4883732 + URR1A DNA MER1_type 6 226 0 3 1711 519 45 0 0 chr5 147653598 147653664 -4883595 + (TC)n Simple_repeat Simple_repeat 2 67 0 3 1711 668 256 92 19 chr5 147653894 147654101 -4883158 - ID_B1 SINE B4 -1 223 2 3 1711 1013 66 73 0 chr5 147654122 147654258 -4883001 + B1_Mus1 SINE Alu 3 148 0 3 1711 1142 64 0 0 chr5 147654684 147654824 -4882435 - B1_Mus1 SINE Alu -8 140 1 3 1711 279 0 0 0 chr5 147654891 147654922 -4882337 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 1711 596 337 20 36 chr5 147655046 147655298 -4881961 + MLT1H LTR MaLR 16 263 -286 3 1711 1076 118 70 38 chr5 147655490 147655675 -4881584 + B2_Mm2 SINE B2 1 191 -4 3 1711 818 254 6 44 chr5 147656154 147656335 -4880924 - ID_B1 SINE B4 0 224 51 3 1711 405 196 52 45 chr5 147657694 147657819 -4879440 - B1F SINE Alu -23 126 2 3 1711 203 167 0 0 chr5 147659213 147659255 -4878004 + T-rich Low_complexity Low_complexity 1 42 0 3 1711 21 0 0 0 chr5 147659589 147659610 -4877649 + AT_rich Low_complexity Low_complexity 1 21 0 3 1711 297 0 0 0 chr5 147659793 147659826 -4877433 + (A)n Simple_repeat Simple_repeat 1 33 0 3 1711 939 159 199 0 chr5 147659835 147660011 -4877248 + B3 SINE B2 1 211 -5 3 1711 1115 59 0 0 chr5 147660051 147660186 -4877073 - B1_Mus1 SINE Alu -9 139 5 3 1711 210 197 232 43 chr5 147660505 147660574 -4876685 - ID4_ SINE ID -1 82 1 3 1711 777 197 87 11 chr5 147661124 147661309 -4875950 + B3 SINE B2 1 199 -17 3 1711 1359 113 5 5 chr5 147661385 147661580 -4875679 - B2_Mm2 SINE B2 0 195 1 3 1711 396 0 0 0 chr5 147661758 147661802 -4875457 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 1711 180 77 0 0 chr5 147662186 147662212 -4875047 + (TTG)n Simple_repeat Simple_repeat 3 28 0 3 1711 921 112 7 34 chr5 147662212 147662360 -4874899 - B1_Mur4 SINE Alu 0 150 7 3 1711 669 246 96 24 chr5 147662364 147662572 -4874687 - ID_B1 SINE B4 0 224 2 3 1711 270 0 0 0 chr5 147662618 147662648 -4874611 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 1711 1116 108 18 6 chr5 147663088 147663102 -4874157 - B2_Mm1t SINE B2 -15 178 163 3 1711 1113 97 7 0 chr5 147663102 147663247 -4874012 - B1_Mus1 SINE Alu -1 147 2 3 1711 1116 108 18 6 chr5 147663247 147663400 -4873859 - B2_Mm1t SINE B2 -31 162 9 3 1711 658 174 14 0 chr5 147664167 147664305 -4872954 + GA-rich Low_complexity Low_complexity 2 141 0 3 1711 257 322 24 32 chr5 147664488 147664613 -4872646 + ORR1E LTR MaLR 1 124 -235 3 1711 831 213 91 6 chr5 147664730 147664905 -4872354 - B3 SINE B2 0 216 27 3 1711 1016 129 0 0 chr5 147664928 147665075 -4872184 - B1_Mus1 SINE Alu 0 148 2 3 1711 219 129 0 0 chr5 147665076 147665107 -4872152 - B3 SINE B2 -176 40 10 3 1711 794 160 38 0 chr5 147665280 147665411 -4871848 - B1_Mus2 SINE Alu -1 146 11 3 1711 450 0 0 0 chr5 147665529 147665579 -4871680 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 3 1711 292 207 17 0 chr5 147665582 147665640 -4871619 - ID4 SINE ID -24 59 1 3 1711 306 67 0 0 chr5 147665695 147665740 -4871519 + (T)n Simple_repeat Simple_repeat 1 45 0 3 1711 1225 41 7 0 chr5 147665740 147665886 -4871373 - B1_Mus2 SINE Alu 0 147 1 3 1711 1153 74 0 7 chr5 147666282 147666431 -4870828 - B1_Mus1 SINE Alu 0 148 1 3 1711 501 184 0 0 chr5 147666868 147666955 -4870304 + MT2A LTR ERVL 2 88 -445 3 1711 683 125 25 0 chr5 147666959 147667079 -4870180 + (TTCCC)n Simple_repeat Simple_repeat 3 125 0 3 1711 1082 128 26 58 chr5 147667103 147667134 -4870125 - B2_Mm2 SINE B2 0 195 160 3 1711 1295 80 32 11 chr5 147667134 147667323 -4869936 - B2_Mm2 SINE B2 0 195 3 3 1711 1082 128 26 58 chr5 147667323 147667334 -4869925 - B2_Mm2 SINE B2 -36 159 156 3 1711 347 0 23 0 chr5 147667334 147667377 -4869882 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 3 1711 1082 128 26 58 chr5 147667377 147667523 -4869736 - B2_Mm2 SINE B2 -40 155 12 3 1711 636 102 0 11 chr5 147667515 147667604 -4869655 - B2_Mm2 SINE B2 -107 88 1 3 1711 857 273 11 5 chr5 147667801 147667989 -4869270 - B3 SINE B2 -9 207 19 3 1711 325 279 51 58 chr5 147668216 147668323 -4868936 + MIR SINE MIR 8 113 -149 3 1711 1612 42 5 0 chr5 147668323 147668514 -4868745 - B2_Mm1t SINE B2 -1 192 1 3 1711 325 279 51 58 chr5 147668514 147668562 -4868697 + MIR SINE MIR 114 161 -101 3 1711 305 287 110 0 chr5 147669055 147669191 -4868068 - MIR SINE MIR -30 232 82 3 1711 186 189 0 0 chr5 147669938 147669975 -4867284 + (TATG)n Simple_repeat Simple_repeat 2 38 0 3 1711 222 275 0 0 chr5 147670066 147670146 -4867113 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 3 1711 208 290 0 0 chr5 147670150 147670212 -4867047 + (TG)n Simple_repeat Simple_repeat 1 62 0 3 1711 194 108 0 51 chr5 147670232 147670271 -4866988 + (TATG)n Simple_repeat Simple_repeat 1 37 0 4 1711 250 228 0 0 chr5 147670278 147670335 -4866924 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1711 378 143 0 0 chr5 147670370 147670433 -4866826 + (TG)n Simple_repeat Simple_repeat 1 63 0 4 1711 415 296 182 36 chr5 147670713 147670993 -4866266 - MLT2D LTR ERVL -73 341 21 4 1711 250 345 52 26 chr5 147671055 147671171 -4866088 - MIRc SINE MIR -117 151 33 4 1711 423 230 9 83 chr5 147671460 147671569 -4865690 + MT2B LTR ERVL 158 258 -343 4 1711 1084 80 0 0 chr5 147671472 147671609 -4865650 + B1_Mus2 SINE Alu 7 143 -4 4 1711 318 26 0 0 chr5 147671613 147671652 -4865607 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4 1711 277 280 83 9 chr5 147672053 147672161 -4865098 - MLT1D LTR MaLR -119 386 271 4 1711 621 308 111 31 chr5 147672178 147672627 -4864632 - L1MC1 LINE L1 -8 6325 5841 4 1711 305 333 36 0 chr5 147672632 147672743 -4864516 - PB1D10 SINE Alu -1 116 2 4 1711 746 126 33 7 chr5 147672755 147672907 -4864352 + CT-rich Low_complexity Low_complexity 1 156 0 4 1711 635 142 122 86 chr5 147672911 147673050 -4864209 - B1_Mur4 SINE Alu -6 144 1 4 1711 279 220 166 1 chr5 147673051 147673156 -4864103 - L1MC1 LINE L1 -481 5852 5730 4 1711 1410 94 16 0 chr5 147674145 147674337 -4862922 + B2_Mm2 SINE B2 1 195 0 4 1711 203 88 0 29 chr5 147674339 147674363 -4862896 + (GGAGAA)n Simple_repeat Simple_repeat 3 26 0 4 1711 1224 101 0 0 chr5 147674363 147674541 -4862718 + (GAA)n Simple_repeat Simple_repeat 3 180 0 4 1711 203 88 0 29 chr5 147674541 147674551 -4862708 + (GGAGAA)n Simple_repeat Simple_repeat 3 12 0 4 1711 513 259 66 47 chr5 147674568 147674779 -4862480 + LTR86A2 LTR ERVL 11 225 -283 4 1711 576 278 39 44 chr5 147674982 147675160 -4862099 + MLT1B LTR MaLR 1 177 -213 4 1711 880 186 0 7 chr5 147675160 147675306 -4861953 + B1_Mm SINE Alu 3 147 0 4 1711 576 278 39 44 chr5 147675306 147675330 -4861929 + MLT1B LTR MaLR 178 202 -188 4 1711 470 296 0 0 chr5 147675355 147675463 -4861796 - PB1D10 SINE Alu -5 112 5 4 1711 527 230 32 22 chr5 147675465 147675606 -4861653 + MLT1B LTR MaLR 195 339 -51 4 1711 342 0 0 0 chr5 147675750 147675788 -4861471 + (TG)n Simple_repeat Simple_repeat 1 38 0 4 1711 457 195 37 0 chr5 147676094 147676176 -4861083 + PB1D7 SINE Alu 35 119 -1 4 1711 663 183 61 0 chr5 147676295 147676426 -4860833 - B1_Mur1 SINE Alu -10 139 1 4 1711 203 328 118 8 chr5 147676435 147676566 -4860693 - MIRc SINE MIR -64 144 1 4 1711 827 126 87 35 chr5 147676595 147676768 -4860491 + B2_Mm2 SINE B2 5 186 -9 4 1711 1048 246 0 0 chr5 147676817 147677028 -4860231 - B3 SINE B2 -5 211 1 4 1711 275 309 182 17 chr5 147677093 147677285 -4859974 - MIR SINE MIR -36 240 20 4 1711 300 111 36 36 chr5 147677436 147677520 -4859739 + (CA)n Simple_repeat Simple_repeat 2 85 0 4 1711 481 96 56 31 chr5 147677556 147677717 -4859542 + (CA)n Simple_repeat Simple_repeat 1 165 0 4 1711 1435 275 106 32 chr5 147677717 147678153 -4859106 - MT2A LTR ERVL -65 468 1 4 1711 413 284 50 25 chr5 147678163 147678322 -4858937 + MLT1A0 LTR MaLR 28 190 -184 4 1711 288 322 112 60 chr5 147678370 147678621 -4858638 - ORR1E LTR MaLR -3 356 93 4 1711 1486 51 6 0 chr5 147678678 147678855 -4858404 - B2_Mm1t SINE B2 -14 179 2 4 1711 472 335 41 41 chr5 147678993 147679189 -4858070 + MLT1A0 LTR MaLR 170 365 0 4 1711 205 200 0 24 chr5 147679993 147680034 -4857225 + CT-rich Low_complexity Low_complexity 4 43 0 4 1711 738 169 46 0 chr5 147680531 147680661 -4856598 - B1_Mus2 SINE Alu -1 146 11 4 1711 1796 241 134 55 chr5 147680696 147680817 -4856442 - Lx8 LINE L1 0 7473 7328 4 1711 237 33 0 0 chr5 147680817 147680847 -4856412 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1711 1796 241 134 55 chr5 147680847 147681458 -4855801 - Lx8 LINE L1 -146 7327 6683 4 1711 667 196 16 18 chr5 147681461 147681597 -4855662 + ORR1C2 LTR MaLR 248 382 -2 4 1711 247 250 102 0 chr5 147681597 147681676 -4855583 - MER58D DNA MER1_type -66 320 233 4 1711 1069 95 0 13 chr5 147681676 147681825 -4855434 + B1_Mus1 SINE Alu 2 148 0 4 1711 1504 257 43 40 chr5 147681913 147682226 -4855033 - MTD LTR MaLR -22 397 83 4 1711 2810 110 67 35 chr5 147682226 147682717 -4854542 - LTRIS4 LTR ERV1 0 507 1 4 1711 1504 257 43 40 chr5 147682717 147682751 -4854508 - MTD LTR MaLR -337 82 49 4 1711 471 113 0 0 chr5 147682752 147682823 -4854436 + (TC)n Simple_repeat Simple_repeat 2 72 0 4 1711 795 92 227 0 chr5 147682830 147682949 -4854310 - B1_Mm SINE Alu -1 146 1 4 1711 375 303 153 66 chr5 147683326 147683716 -4853543 - RLTR26 LTR ERVK -181 461 14 4 1711 441 0 0 0 chr5 147683866 147683915 -4853344 + (CA)n Simple_repeat Simple_repeat 1 49 0 4 1711 699 269 100 17 chr5 147683915 147684146 -4853113 - RMER15 LTR ERVL -52 523 274 4 1711 245 302 39 68 chr5 147684192 147684295 -4852964 - RMER15 LTR ERVL -473 102 3 4 1711 351 113 0 0 chr5 147684537 147684599 -4852660 + (TC)n Simple_repeat Simple_repeat 1 62 0 4 1711 186 324 101 50 chr5 147684870 147685049 -4852210 - MIRb SINE MIR -14 254 67 4 1711 1389 232 68 22 chr5 147685313 147685679 -4851580 + MTD LTR MaLR 23 405 -14 4 1711 215 288 34 0 chr5 147685951 147686010 -4851249 - ID4 SINE ID -5 78 18 4 1711 1142 60 0 0 chr5 147686129 147686263 -4850996 + B1_Mus2 SINE Alu 1 134 -13 4 1711 255 31 0 0 chr5 147686263 147686295 -4850964 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 4 1711 1146 95 71 0 chr5 147686307 147686475 -4850784 + B2_Mm1t SINE B2 2 181 -12 4 1711 180 0 0 0 chr5 147686559 147686579 -4850680 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4 1711 348 346 8 16 chr5 147687173 147687302 -4849957 - Tigger7 DNA MER2_type 0 2491 2364 4 1711 389 222 17 23 chr5 147688077 147688252 -4849007 + CT-rich Low_complexity Low_complexity 3 176 0 4 1711 203 125 25 0 chr5 147688294 147688334 -4848925 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 4 1711 366 239 33 0 chr5 147688336 147688428 -4848831 - B1_Mus2 SINE Alu -52 95 1 4 1711 241 314 17 87 chr5 147688428 147688462 -4848797 - MT2B LTR ERVL -442 159 134 4 1711 477 160 117 0 chr5 147688722 147688816 -4848443 - PB1 SINE Alu -2 125 21 4 1711 569 253 31 38 chr5 147688977 147689137 -4848122 - RSINE1 SINE B4 -4 161 3 4 1711 1278 34 0 0 chr5 147689419 147689566 -4847693 + B1_Mm SINE Alu 1 147 0 4 1711 198 0 0 0 chr5 147689566 147689588 -4847671 + (A)n Simple_repeat Simple_repeat 1 22 0 4 1711 858 119 96 15 chr5 147690496 147690632 -4846627 + B1_Mus2 SINE Alu 1 147 0 4 1711 2374 234 66 118 chr5 147690682 147690874 -4846385 + MMAR1 DNA Mariner 75 217 -1069 4 1711 1193 116 20 31 chr5 147690874 147691070 -4846189 - B2_Mm2 SINE B2 0 195 2 4 1711 2374 234 66 118 chr5 147691070 147691634 -4845625 + MMAR1 DNA Mariner 218 792 -494 4 1711 2823 189 24 25 chr5 147692017 147692566 -4844693 - RMER15 LTR ERVL 0 575 28 4 1711 221 163 80 20 chr5 147692860 147692910 -4844349 - B1F1 SINE Alu -51 98 46 4 1711 431 270 27 9 chr5 147693178 147693290 -4843969 + PB1D7 SINE Alu 1 114 -6 4 1711 329 60 82 14 chr5 147693393 147693456 -4843803 + B1_Mur4 SINE Alu 2 60 -90 4 1711 247 219 0 72 chr5 147693395 147693464 -4843795 + ID_B1 SINE B4 84 147 -77 4 1711 387 261 0 0 chr5 147693466 147693788 -4843471 + GA-rich Low_complexity Low_complexity 1 322 0 4 1711 739 69 10 0 chr5 147693796 147693898 -4843361 + B1_Mur4 SINE Alu 43 145 -5 4 1711 392 344 120 12 chr5 147694456 147694715 -4842544 + L1MEg LINE L1 1273 1559 -4525 4 1711 1023 201 39 5 chr5 147694726 147694931 -4842328 + B3 SINE B2 1 212 -4 4 1711 336 102 0 0 chr5 147695007 147695056 -4842203 + (CACG)n Simple_repeat Simple_repeat 2 50 0 4 1711 241 246 132 66 chr5 147695059 147695211 -4842048 + ORR1D1 LTR MaLR 6 167 -207 4 1711 914 149 62 17 chr5 147696153 147696331 -4840928 - B2_Mm2 SINE B2 -8 187 2 4 1711 403 254 122 8 chr5 147696368 147696491 -4840768 - MLT1A1 LTR MaLR -4 404 268 4 1711 376 238 59 10 chr5 147696544 147696646 -4840613 + PB1D7 SINE Alu 2 108 -12 4 1711 358 281 12 0 chr5 147696661 147696743 -4840516 + RSINE1 SINE B4 82 164 -1 4 1711 1237 119 11 0 chr5 147696770 147696946 -4840313 + B2_Mm1t SINE B2 1 178 -15 4 1711 236 65 0 0 chr5 147696960 147696991 -4840268 + B2_Mm2 SINE B2 47 77 -118 4 1711 272 61 41 0 chr5 147696996 147697045 -4840214 + B2_Mm1t SINE B2 138 188 -5 4 1711 284 191 146 73 chr5 147697049 147697063 -4840196 + MT2B LTR ERVL 145 165 -436 4 1711 494 150 30 2 chr5 147697063 147697172 -4840087 + B1_Mur3 SINE Alu 2 120 0 4 1711 306 0 0 0 chr5 147697173 147697207 -4840052 + (CA)n Simple_repeat Simple_repeat 2 35 0 4 1711 830 240 53 14 chr5 147698611 147698818 -4838441 - B3 SINE B2 -1 215 1 4 1711 384 271 0 59 chr5 147698844 147698946 -4838313 - B1F1 SINE Alu -21 96 1 4 1711 367 212 0 0 chr5 147699421 147699487 -4837772 - B1_Mur1 SINE Alu -10 139 74 4 1711 248 276 22 33 chr5 147699487 147699502 -4837757 - ID_B1 SINE B4 -1 194 135 4 1711 496 235 13 145 chr5 147699587 147699746 -4837513 - B1_Mur2 SINE Alu -9 140 3 4 1711 336 228 43 0 chr5 147699746 147699838 -4837421 + Tigger7 DNA MER2_type 2301 2396 -95 4 1711 873 96 0 0 chr5 147699880 147700005 -4837254 + (GGAGA)n Simple_repeat Simple_repeat 2 126 0 4 1711 269 250 40 27 chr5 147700437 147700511 -4836748 + MIRb SINE MIR 24 98 -170 4 1711 377 188 122 20 chr5 147700685 147700783 -4836476 - B1F SINE Alu 0 149 42 4 1711 465 185 14 29 chr5 147700807 147700946 -4836313 + (TATATG)n Simple_repeat Simple_repeat 1 137 0 4 1711 1481 23 0 0 chr5 147701161 147701336 -4835923 + B2_Mm1t SINE B2 19 193 0 4 1711 2772 49 0 0 chr5 147701524 147701849 -4835410 - ORR1A2 LTR MaLR -2 325 1 4 1711 274 275 0 24 chr5 147702088 147702252 -4835007 + (TATATG)n Simple_repeat Simple_repeat 5 164 0 4 1711 448 45 30 0 chr5 147702278 147702345 -4834914 + (TG)n Simple_repeat Simple_repeat 2 70 0 5 1711 239 297 26 26 chr5 147702391 147702467 -4834792 - MamRep564 Unknown Unknown -217 140 65 5 1711 409 179 0 8 chr5 147702587 147702665 -4834594 + B1_Mur2 SINE Alu 33 135 -14 5 1711 257 239 27 40 chr5 147702603 147702677 -4834582 + ID_B1 SINE B4 152 224 0 5 1711 279 79 0 0 chr5 147702677 147702715 -4834544 + (GGA)n Simple_repeat Simple_repeat 2 39 0 5 1711 907 184 85 25 chr5 147703018 147703219 -4834040 + B3 SINE B2 3 215 -1 5 1711 1345 83 16 16 chr5 147703238 147703421 -4833838 + B2_Mm2 SINE B2 2 184 -11 5 1711 443 134 12 0 chr5 147703421 147703503 -4833756 + (TA)n Simple_repeat Simple_repeat 2 84 0 5 1711 221 75 0 24 chr5 147703679 147703720 -4833539 + (TTAA)n Simple_repeat Simple_repeat 3 42 0 5 1711 566 55 0 0 chr5 147703729 147703802 -4833457 - B1_Mus2 SINE Alu 0 147 75 5 1711 908 69 2 11 chr5 147703810 147703938 -4833321 + B2_Mm2 SINE B2 70 193 -2 5 1711 1416 74 16 5 chr5 147703938 147704128 -4833131 + B2_Mm2 SINE B2 1 192 -3 5 1711 271 246 83 141 chr5 147704128 147704155 -4833104 + B3 SINE B2 192 216 0 5 1711 700 128 0 1 chr5 147704177 147704287 -4832972 + B2_Mm2 SINE B2 41 149 -44 5 1711 401 94 0 0 chr5 147704315 147704379 -4832880 + B2_Mm1a SINE B2 127 190 -3 5 1711 1912 163 23 40 chr5 147704396 147704742 -4832517 - RLTR18 LTR ERVK -276 340 1 5 1711 33 85 0 0 chr5 147704931 147705013 -4832246 + AT_rich Low_complexity Low_complexity 1 82 0 5 1711 686 179 18 0 chr5 147705033 147705145 -4832114 - B1_Mur4 SINE Alu -34 116 3 5 1711 207 0 0 0 chr5 147705416 147705439 -4831820 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1711 845 188 12 34 chr5 147705457 147705688 -4831571 - B3A SINE B2 0 216 2 5 1711 980 82 227 31 chr5 147705774 147705937 -4831322 - B2_Mm2 SINE B2 0 195 1 5 1711 1233 235 57 19 chr5 147706101 147706434 -4830825 - RLTR11A2 LTR ERVK 0 527 201 5 1711 941 294 19 34 chr5 147706427 147706694 -4830565 + MTE2a LTR MaLR 115 377 -2 5 1711 216 97 0 0 chr5 147706943 147706974 -4830285 + (TCC)n Simple_repeat Simple_repeat 3 33 0 5 1711 685 229 16 39 chr5 147706976 147707158 -4830101 - B2_Mm2 SINE B2 -17 178 1 5 1711 567 179 19 0 chr5 147707308 147707414 -4829845 + MTD LTR MaLR 1 108 -311 5 1711 234 229 42 0 chr5 147707643 147707691 -4829568 + MTD LTR MaLR 74 123 -296 5 1711 297 199 27 18 chr5 147707727 147707808 -4829451 + MTD LTR MaLR 295 419 0 5 1711 953 135 21 0 chr5 147708016 147708157 -4829102 - B1_Mur4 SINE Alu -1 149 6 5 1711 455 179 0 152 chr5 147708058 147708183 -4829076 - MT2B LTR ERVL -344 257 152 5 1711 207 0 0 0 chr5 147709866 147709889 -4827370 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1711 555 16 0 0 chr5 147710493 147710557 -4826702 + (GA)n Simple_repeat Simple_repeat 2 65 0 5 1711 1341 61 0 0 chr5 147710560 147710740 -4826519 + (GAA)n Simple_repeat Simple_repeat 1 180 0 5 1711 1551 158 105 68 chr5 147710763 147711115 -4826144 - RMER21A LTR ERV1 -571 376 12 5 1711 309 330 30 0 chr5 147711170 147711270 -4825989 - RMER4B LTR ERVK -137 448 346 5 1711 1587 217 32 30 chr5 147711271 147711642 -4825617 - RodERV21-int LTR ERV1 -165 4826 4455 5 1711 1288 207 18 25 chr5 147711640 147711918 -4825341 - RodERV21-int LTR ERV1 -1213 3778 3503 5 1711 183 42 0 0 chr5 147712234 147712258 -4825001 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 5 1711 4886 211 39 25 chr5 147712264 147713362 -4823897 - RodERV21-int LTR ERV1 -2341 2650 1537 5 1711 285 281 115 29 chr5 147713354 147713493 -4823766 - RodERV21-int LTR ERV1 -3837 1154 1004 5 1711 526 200 84 21 chr5 147713828 147713971 -4823288 - RLTR42-int LTR ERVK -4173 1349 1198 5 1711 1954 191 132 56 chr5 147714290 147714458 -4822801 - RodERV21-int LTR ERV1 -3982 1009 842 5 1711 1332 77 22 16 chr5 147714458 147714642 -4822617 + B2_Mm2 SINE B2 2 186 -9 5 1711 1954 191 132 56 chr5 147714642 147715115 -4822144 - RodERV21-int LTR ERV1 -4150 841 319 5 1711 1932 194 28 0 chr5 147715171 147715558 -4821701 - RodERV21-int LTR ERV1 -4538 453 56 5 1711 315 0 0 0 chr5 147715598 147715633 -4821626 + (TC)n Simple_repeat Simple_repeat 2 36 0 5 1711 432 0 0 0 chr5 147715633 147715680 -4821579 + (TG)n Simple_repeat Simple_repeat 1 48 0 5 1711 283 228 88 12 chr5 147715703 147715783 -4821476 - RSINE1 SINE B4 -77 88 3 5 1711 415 179 0 0 chr5 147716003 147716070 -4821189 - B1_Mus1 SINE Alu -72 76 10 5 1711 392 161 0 0 chr5 147716018 147716080 -4821179 - ID_B1 SINE B4 -83 141 80 5 1711 429 217 49 131 chr5 147716234 147716356 -4820903 + B1_Mur2 SINE Alu 18 129 -20 5 1711 364 257 88 44 chr5 147716384 147716464 -4820795 + B3A SINE B2 23 110 -88 5 1711 1424 147 4 4 chr5 147716464 147716690 -4820569 - URR1A DNA MER1_type 0 226 1 5 1711 364 257 88 44 chr5 147716690 147716723 -4820536 + B3A SINE B2 111 141 -57 5 1711 1250 41 0 0 chr5 147716986 147717131 -4820128 - B1_Mus1 SINE Alu -2 146 2 5 1712 24 32 0 0 chr5 147718325 147718356 -4818903 + AT_rich Low_complexity Low_complexity 1 31 0 5 1712 771 191 7 0 chr5 147718381 147718517 -4818742 - B1_Mus2 SINE Alu -9 138 2 5 1712 1223 121 0 0 chr5 147718730 147718904 -4818355 + B2_Mm2 SINE B2 1 174 -21 5 1712 398 93 29 2 chr5 147718954 147719059 -4818200 + B2_Mm2 SINE B2 47 190 -5 5 1712 579 213 0 80 chr5 147719745 147719883 -4817376 - B1_Mur3 SINE Alu -21 128 2 5 1712 218 325 15 89 chr5 147719768 147719903 -4817356 - B4A SINE B4 -98 194 70 5 1712 248 224 0 0 chr5 147720026 147720075 -4817184 + BC1_Mm scRNA scRNA 31 79 -73 5 1712 468 0 0 0 chr5 147720613 147720665 -4816594 + (TG)n Simple_repeat Simple_repeat 2 53 0 5 1712 717 97 0 0 chr5 147720975 147721078 -4816181 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 5 1712 778 177 48 19 chr5 147721078 147721269 -4815990 - B3 SINE B2 0 195 1 5 1712 356 196 0 0 chr5 147721358 147721414 -4815845 + PB1D9 SINE Alu 9 64 -56 5 1712 203 283 33 0 chr5 147721797 147721857 -4815402 + (CATG)n Simple_repeat Simple_repeat 2 63 0 5 1712 423 350 0 22 chr5 147721842 147722026 -4815233 + (TG)n Simple_repeat Simple_repeat 1 180 0 5 1712 1274 104 44 0 chr5 147722109 147722291 -4814968 - B2_Mm2 SINE B2 -4 191 2 5 1712 335 247 13 13 chr5 147722320 147722398 -4814861 - PB1D10 SINE Alu -37 80 3 5 1712 204 209 0 0 chr5 147723520 147723563 -4813696 - MIRb SINE MIR -9 259 217 5 1712 423 0 0 0 chr5 147723597 147723644 -4813615 + (CA)n Simple_repeat Simple_repeat 2 48 0 5 1712 199 336 114 20 chr5 147724481 147724630 -4812629 + MIRb SINE MIR 88 250 -18 5 1712 885 115 39 0 chr5 147724657 147724787 -4812472 - B1_Mur4 SINE Alu -10 140 6 5 1712 318 216 91 146 chr5 147724674 147724892 -4812367 - MT2B LTR ERVL -306 278 80 5 1712 519 312 25 64 chr5 147724918 147725120 -4812139 - Tigger5 DNA MER2_type -2209 197 4 5 1712 317 94 5 0 chr5 147726347 147726406 -4810853 + B1_Mus2 SINE Alu 60 147 0 5 1712 500 163 89 13 chr5 147726426 147726542 -4810717 - B3 SINE B2 -69 126 1 5 1712 315 120 0 96 chr5 147727028 147727111 -4810148 + Lx LINE L1 6580 6654 0 5 1712 703 156 102 15 chr5 147727152 147727289 -4809970 - B1_Mur4 SINE Alu 0 150 2 5 1712 348 161 0 0 chr5 147728218 147728274 -4808985 + B1_Mur1 SINE Alu 73 128 -21 5 1712 1157 279 63 63 chr5 147728293 147728656 -4808603 + ORR1D2 LTR MaLR 8 370 0 5 1712 712 159 196 0 chr5 147728691 147728854 -4808405 + B2_Mm2 SINE B2 1 195 0 5 1712 806 97 26 0 chr5 147728865 147728978 -4808281 + B1_Mus1 SINE Alu 33 148 0 5 1712 277 180 95 6 chr5 147728989 147729082 -4808177 + B1F SINE Alu 13 149 0 5 1712 1589 27 27 0 chr5 147729169 147729357 -4807902 - B2_Mm1a SINE B2 0 193 1 5 1712 1219 132 11 5 chr5 147729550 147729741 -4807518 + B2_Mm2 SINE B2 1 192 -3 5 1712 1695 26 0 0 chr5 147729757 147729949 -4807310 + B2_Mm1a SINE B2 2 193 0 5 1712 1466 22 6 0 chr5 147729968 147730146 -4807113 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 5 1712 1054 232 14 0 chr5 147730176 147730387 -4806872 + B3 SINE B2 3 216 0 5 1712 335 0 0 0 chr5 147730401 147730440 -4806819 + tRNA-Ile-ATT tRNA tRNA 1 39 -38 5 1712 355 208 49 80 chr5 147730444 147730606 -4806653 - Arthur1B DNA Tip100 -102 1123 967 5 1712 418 313 114 0 chr5 147730622 147730753 -4806506 + RSINE1 SINE B4 5 150 -15 5 1712 391 286 124 19 chr5 147731025 147731235 -4806024 - L1MB3 LINE L1 -285 5898 5667 5 1712 185 200 25 0 chr5 147731319 147731359 -4805900 + L2 LINE L2 267 307 -3112 5 1712 230 286 0 0 chr5 147731696 147731752 -4805507 + GA-rich Low_complexity Low_complexity 2 57 0 5 1712 207 0 0 0 chr5 147732007 147732030 -4805229 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 5 1712 583 153 209 20 chr5 147732548 147732701 -4804558 + Lx4B LINE L1 6877 7058 0 5 1712 1336 112 21 0 chr5 147733268 147733455 -4803804 - B2_Mm1t SINE B2 -2 191 1 5 1712 495 0 0 0 chr5 147733882 147733937 -4803322 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1712 1538 67 0 0 chr5 147733949 147734142 -4803117 - B2_Mm1t SINE B2 0 193 1 5 1712 896 169 125 0 chr5 147734215 147734399 -4802860 - B3 SINE B2 -5 211 5 5 1712 434 227 0 33 chr5 147734479 147734570 -4802689 + PB1D10 SINE Alu 17 104 -13 5 1712 1136 59 5 142 chr5 147734568 147734765 -4802494 - B2_Mm2 SINE B2 0 195 26 5 1712 237 346 0 0 chr5 147734706 147734769 -4802490 - RSINE1 SINE B4 -80 85 23 5 1712 1317 95 26 0 chr5 147734769 147734958 -4802301 - B2_Mm2 SINE B2 -1 194 1 5 1712 237 346 0 0 chr5 147734958 147734972 -4802287 - RSINE1 SINE B4 -143 22 9 5 1712 391 237 9 0 chr5 147736101 147736192 -4801067 + ID2 SINE ID 11 105 -47 5 1712 204 111 0 0 chr5 147736218 147736254 -4801005 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1712 301 205 43 0 chr5 147736352 147736469 -4800790 + (TA)n Simple_repeat Simple_repeat 2 123 0 5 1712 1004 114 7 20 chr5 147736532 147736684 -4800575 + B1_Mur4 SINE Alu 1 150 0 5 1712 861 194 89 0 chr5 147736702 147736882 -4800377 + B3 SINE B2 11 206 -10 6 1712 336 319 149 54 chr5 147736885 147737133 -4800126 - L1MC4a LINE L1 -1963 5919 5642 6 1712 243 0 0 0 chr5 147737133 147737160 -4800099 + (TG)n Simple_repeat Simple_repeat 1 27 0 6 1712 336 319 149 54 chr5 147737160 147737206 -4800053 - L1MC4a LINE L1 -2241 5641 5597 6 1712 950 236 84 17 chr5 147737220 147737457 -4799802 - ORR1D2 LTR MaLR -7 363 111 6 1712 241 118 0 121 chr5 147737514 147737572 -4799687 - B1_Mur4 SINE Alu -2 148 98 6 1712 391 291 76 35 chr5 147737687 147737858 -4799401 - B3A SINE B2 -16 182 5 6 1712 335 240 101 101 chr5 147738150 147738289 -4798970 + L1ME3B LINE L1 6000 6138 -102 6 1712 587 301 19 19 chr5 147738590 147738749 -4798510 - B4A SINE B4 -131 161 3 6 1712 388 122 96 43 chr5 147738763 147738857 -4798402 - Lx8 LINE L1 -355 7118 7020 6 1712 427 252 65 32 chr5 147738865 147738988 -4798271 - B1_Mur4 SINE Alu -21 129 3 6 1712 237 146 125 18 chr5 147739012 147739068 -4798191 - Lx8 LINE L1 -479 6994 6933 6 1712 1103 193 41 0 chr5 147739284 147739481 -4797778 + B3 SINE B2 5 209 -7 6 1712 282 297 0 29 chr5 147739514 147739618 -4797641 - Charlie1a DNA MER1_type -64 1391 1291 6 1712 315 304 13 0 chr5 147739624 147739703 -4797556 + ID4 SINE ID 1 80 -3 6 1712 21 0 0 0 chr5 147739766 147739787 -4797472 + AT_rich Low_complexity Low_complexity 1 21 0 6 1712 920 124 6 0 chr5 147739980 147740158 -4797101 + (GA)n Simple_repeat Simple_repeat 2 180 0 6 1712 423 208 98 10 chr5 147740250 147740352 -4796907 - PB1D9 SINE Alu -9 111 1 6 1712 271 182 36 0 chr5 147741700 147741755 -4795504 - MER63D DNA AcHobo -677 384 328 6 1712 1045 130 29 17 chr5 147742188 147742205 -4795054 - B2_Mm2 SINE B2 -20 175 159 6 1712 207 0 0 0 chr5 147742205 147742228 -4795031 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 6 1712 1074 110 32 0 chr5 147742228 147742382 -4794877 - B2_Mm1t SINE B2 -33 160 2 6 1712 1163 107 0 6 chr5 147742498 147742677 -4794582 + (TTC)n Simple_repeat Simple_repeat 3 180 0 6 1712 401 218 69 0 chr5 147742680 147742767 -4794492 - B1_Mur2 SINE Alu -28 121 29 6 1712 552 298 14 28 chr5 147742756 147742901 -4794358 - B3A SINE B2 -55 143 1 6 1712 1198 178 9 23 chr5 147743306 147743524 -4793735 + B3 SINE B2 1 215 -1 6 1712 297 299 50 25 chr5 147743755 147743875 -4793384 - MIRb SINE MIR -59 209 87 6 1712 330 115 0 0 chr5 147744366 147744418 -4792841 + (TTA)n Simple_repeat Simple_repeat 2 53 0 6 1712 588 179 179 0 chr5 147744418 147744530 -4792729 - B1_Mur2 SINE Alu -16 133 2 6 1712 608 227 9 0 chr5 147744537 147744647 -4792612 - PB1D10 SINE Alu -1 116 6 6 1712 1041 32 0 0 chr5 147745327 147745452 -4791807 - B1_Mus2 SINE Alu -22 125 1 6 1712 299 250 35 70 chr5 147745569 147745655 -4791604 + PB1D7 SINE Alu 38 120 0 6 1712 1370 76 36 36 chr5 147745659 147745851 -4791408 + B2_Mm2 SINE B2 3 194 -1 6 1712 1121 208 9 14 chr5 147746469 147746679 -4790580 + B3 SINE B2 2 210 -6 6 1712 234 239 0 0 chr5 147747634 147747680 -4789579 + (CA)n Simple_repeat Simple_repeat 1 46 0 6 1712 318 338 119 7 chr5 147747698 147747806 -4789453 + RSINE1 SINE B4 2 121 -44 6 1712 336 64 0 0 chr5 147747806 147747853 -4789406 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1712 318 338 119 7 chr5 147747853 147747887 -4789372 + RSINE1 SINE B4 122 159 -6 6 1712 444 336 96 53 chr5 147747899 147748297 -4788962 - Charlie20a DNA Charlie -166 641 222 6 1712 1386 70 16 11 chr5 147748297 147748484 -4788775 - B2_Mm2 SINE B2 -7 188 1 6 1712 444 336 96 53 chr5 147748484 147748597 -4788662 - Charlie20a DNA Charlie -586 221 108 6 1712 802 129 118 22 chr5 147749006 147749141 -4788118 + B1_Mur4 SINE Alu 3 150 0 6 1712 1007 71 12 253 chr5 147750370 147750447 -4786812 + B2_Mm2 SINE B2 1 71 -124 6 1712 1187 61 0 0 chr5 147750447 147750595 -4786664 + B1_Mus1 SINE Alu 1 148 0 6 1712 1007 71 12 253 chr5 147750595 147750762 -4786497 + B2_Mm2 SINE B2 72 186 -9 6 1712 654 216 162 12 chr5 147750778 147750951 -4786308 - B3 SINE B2 -13 203 5 6 1712 260 287 48 19 chr5 147752211 147752314 -4784945 - MIR SINE MIR -122 140 35 6 1712 1131 108 66 0 chr5 147752783 147752950 -4784309 + B2_Mm1t SINE B2 2 179 -14 6 1712 355 80 364 10 chr5 147752998 147753097 -4784162 + B2_Mm2 SINE B2 48 181 -14 6 1712 1512 72 0 5 chr5 147755208 147755403 -4781856 - B2_Mm2 SINE B2 0 195 2 6 1712 911 150 8 0 chr5 147755857 147755990 -4781269 + B1_Mur1 SINE Alu 2 135 -14 6 1712 850 202 63 39 chr5 147756228 147756434 -4780825 + B3 SINE B2 5 215 -1 6 1712 526 226 0 25 chr5 147756682 147756800 -4780459 - PB1D9 SINE Alu -4 116 2 6 1712 336 175 0 0 chr5 147756802 147756865 -4780394 - MLT1F2 LTR MaLR -64 616 554 6 1712 391 96 0 40 chr5 147756865 147756982 -4780277 - B2_Mm2 SINE B2 -1 194 46 6 1712 1240 72 18 0 chr5 147757023 147757190 -4780069 - B2_Mm1t SINE B2 -22 171 2 6 1712 385 294 109 62 chr5 147757190 147757246 -4780013 - MLT1F2 LTR MaLR -111 449 393 6 1712 2664 111 68 2 chr5 147757246 147757660 -4779599 - BGLII_B LTR ERVK 0 441 1 6 1712 385 291 90 94 chr5 147757660 147757810 -4779449 - MLT1F2 LTR MaLR -168 392 228 6 1712 246 301 113 53 chr5 147757924 147758075 -4779184 - MIRb SINE MIR -66 202 43 6 1712 834 166 20 14 chr5 147758738 147758885 -4778374 - B1_Mus1 SINE Alu 0 148 1 6 1712 225 0 0 0 chr5 147759440 147759465 -4777794 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1712 1258 41 0 0 chr5 147759465 147759612 -4777647 + B1_Mm SINE Alu 1 147 0 6 1712 243 0 0 0 chr5 147759613 147759640 -4777619 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 6 1712 327 293 0 10 chr5 147759878 147759978 -4777281 - MER5B DNA MER1_type -77 101 3 6 1712 26 0 0 0 chr5 147760430 147760456 -4776803 + GC_rich Low_complexity Low_complexity 1 26 0 6 1712 468 0 0 0 chr5 147760614 147760666 -4776593 + (CAGGG)n Simple_repeat Simple_repeat 3 54 0 6 1712 893 137 43 0 chr5 147761026 147761165 -4776094 - B1_Mus2 SINE Alu -2 145 1 6 1712 459 228 169 8 chr5 147761903 147762027 -4775232 + RSINE1 SINE B4 1 144 -21 6 1712 180 0 0 0 chr5 147762223 147762243 -4775016 + (CAGGC)n Simple_repeat Simple_repeat 3 22 0 6 1712 401 254 0 0 chr5 147762316 147762387 -4774872 + RSINE1 SINE B4 4 74 -91 6 1712 875 239 0 0 chr5 147762543 147762702 -4774557 - B3 SINE B2 -57 159 1 6 1712 992 211 52 0 chr5 147763186 147763380 -4773879 - B3 SINE B2 -10 206 3 6 1712 998 130 171 5 chr5 147765763 147765956 -4771303 - URR1A DNA MER1_type 0 226 2 6 1712 334 197 40 0 chr5 147766590 147766666 -4770593 - B3A SINE B2 -119 79 1 6 1712 639 0 0 0 chr5 147767650 147767721 -4769538 + (GGGA)n Simple_repeat Simple_repeat 4 74 0 6 1712 925 203 51 25 chr5 147768007 147768204 -4769055 - B3 SINE B2 -14 202 1 6 1712 1209 41 7 0 chr5 147768982 147769128 -4768131 + B1_Mm SINE Alu 1 147 0 6 1712 989 169 88 19 chr5 147770166 147770371 -4766888 - URR1A DNA MER1_type 0 226 8 6 1712 712 172 128 51 chr5 147771186 147771382 -4765877 + B3 SINE B2 1 211 -5 6 1712 446 156 2 53 chr5 147771473 147771586 -4765673 + B1_Mur4 SINE Alu 15 120 0 6 1712 317 235 29 0 chr5 147771633 147771701 -4765558 + ID4_ SINE ID 1 70 -13 6 1712 1218 218 123 25 chr5 147773136 147773477 -4763782 + MTD LTR MaLR 1 416 -3 6 1712 656 309 73 64 chr5 147773694 147773770 -4763489 + RCHARR1 DNA MER1_type 292 378 -596 6 1712 1014 77 35 14 chr5 147773770 147773915 -4763344 + B1_Mus1 SINE Alu 1 148 0 6 1712 656 309 73 64 chr5 147773915 147774275 -4762984 + RCHARR1 DNA MER1_type 379 732 -242 6 1712 228 139 0 0 chr5 147774275 147774311 -4762948 + RSINE1 SINE B4 1 36 -129 6 1712 180 77 0 0 chr5 147774311 147774337 -4762922 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 6 1712 466 220 20 10 chr5 147774338 147774439 -4762820 - RSINE1 SINE B4 -6 159 58 6 1712 420 164 41 1 chr5 147774482 147774579 -4762680 - PB1D9 SINE Alu -8 119 38 6 1712 270 287 18 98 chr5 147774818 147774930 -4762329 + MT2B LTR ERVL 155 257 -344 6 1712 827 175 7 7 chr5 147774832 147774976 -4762283 + B1_Mur2 SINE Alu 6 149 0 6 1712 294 29 0 0 chr5 147775458 147775493 -4761766 + (A)n Simple_repeat Simple_repeat 1 35 0 6 1712 406 277 13 81 chr5 147776491 147776570 -4760689 - MIR SINE MIR -41 221 145 6 1712 1156 88 86 17 chr5 147776570 147776744 -4760515 - B2_Mm1t SINE B2 -7 186 1 6 1712 406 277 13 81 chr5 147776744 147776813 -4760446 - MIR SINE MIR -118 144 83 6 1712 598 285 85 40 chr5 147776899 147777100 -4760159 + B3 SINE B2 6 215 -1 6 1712 1850 118 7 17 chr5 147777152 147777446 -4759813 - ORR1A3 LTR MaLR -34 292 2 6 1712 234 281 18 0 chr5 147777531 147777588 -4759671 + ID4_ SINE ID 26 83 0 6 1712 185 342 8 75 chr5 147778951 147779071 -4758188 - L3b LINE CR1 -238 244 133 6 1712 1534 52 0 10 chr5 147779171 147779367 -4757892 - B2_Mm2 SINE B2 0 195 2 6 1712 1169 58 0 0 chr5 147779389 147779526 -4757733 - B1_Mus2 SINE Alu -9 138 2 6 1712 1270 204 20 56 chr5 147779770 147780072 -4757187 - B4 SINE B4 0 292 2 6 1712 926 153 59 117 chr5 147781572 147781693 -4755566 - B3 SINE B2 0 216 111 6 1712 1236 48 0 0 chr5 147781693 147781839 -4755420 + B1_Mm SINE Alu 1 146 -1 6 1712 926 153 59 117 chr5 147781839 147781939 -4755320 - B3 SINE B2 -106 110 8 6 1712 21 0 0 0 chr5 147782373 147782394 -4754865 + AT_rich Low_complexity Low_complexity 1 21 0 6 1712 186 189 0 0 chr5 147782395 147782432 -4754827 + (TG)n Simple_repeat Simple_repeat 2 38 0 6 1712 635 256 0 4 chr5 147782451 147782719 -4754540 + (TG)n Simple_repeat Simple_repeat 1 267 0 6 1712 643 234 81 17 chr5 147782720 147782750 -4754509 - B3A SINE B2 -13 185 155 6 1712 225 0 0 0 chr5 147782750 147782775 -4754484 + (TC)n Simple_repeat Simple_repeat 2 26 0 7 1712 216 0 0 0 chr5 147782775 147782798 -4754461 + (TG)n Simple_repeat Simple_repeat 1 24 0 7 1712 643 234 81 17 chr5 147782798 147782940 -4754319 - B3A SINE B2 -44 154 2 6 1712 37 52 0 0 chr5 147782940 147782998 -4754261 + AT_rich Low_complexity Low_complexity 1 58 0 7 1712 351 319 85 74 chr5 147783218 147783394 -4753865 - B3 SINE B2 -38 178 1 7 1712 234 191 0 0 chr5 147784168 147784215 -4753044 + T-rich Low_complexity Low_complexity 1 47 0 7 1712 1277 41 0 0 chr5 147784215 147784362 -4752897 - B1_Mus2 SINE Alu 0 147 1 7 1712 1136 90 94 17 chr5 147784362 147784541 -4752718 - B2_Mm2 SINE B2 0 195 2 7 1712 3066 277 49 17 chr5 147784946 147785779 -4751480 - Lx8 LINE L1 -189 7284 6425 7 1712 1014 143 0 0 chr5 147786814 147786961 -4750298 - B1_Mus1 SINE Alu 0 148 2 7 1712 33 0 0 0 chr5 147787073 147787106 -4750153 + AT_rich Low_complexity Low_complexity 1 33 0 7 1712 297 0 0 0 chr5 147787288 147787321 -4749938 + (T)n Simple_repeat Simple_repeat 1 33 0 7 1712 1120 204 24 5 chr5 147787475 147787687 -4749572 + B3 SINE B2 1 216 0 7 1712 28 48 0 0 chr5 147787779 147787821 -4749438 + AT_rich Low_complexity Low_complexity 1 42 0 7 1712 809 145 80 0 chr5 147787959 147788097 -4749162 - B1_Mur4 SINE Alu -1 149 1 7 1712 221 247 155 68 chr5 147788103 147788127 -4749132 - B2_Mm1a SINE B2 -9 184 161 7 1712 240 86 0 0 chr5 147788127 147788162 -4749097 + (TG)n Simple_repeat Simple_repeat 2 36 0 7 1712 370 224 157 96 chr5 147788162 147788299 -4748960 - B3 SINE B2 -33 160 9 7 1712 267 333 66 9 chr5 147788646 147788752 -4748507 - Tigger13a DNA MER2_type -512 259 148 7 1712 1217 55 0 0 chr5 147789269 147789414 -4747845 + B1_Mus1 SINE Alu 2 146 -2 7 1712 674 179 54 52 chr5 147789433 147789665 -4747594 + RMER19C LTR ERVK 1 298 -313 7 1712 1187 96 6 0 chr5 147789665 147789831 -4747428 + B2_Mm1a SINE B2 2 168 -25 7 1712 396 0 0 0 chr5 147789845 147789889 -4747370 + (GA)n Simple_repeat Simple_repeat 2 45 0 7 1712 1146 172 9 28 chr5 147789919 147790134 -4747125 + RMER19C LTR ERVK 401 611 0 7 1712 189 0 0 0 chr5 147790175 147790196 -4747063 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 7 1712 1136 67 0 0 chr5 147790196 147790331 -4746928 - B1_Mus2 SINE Alu -12 135 1 7 1712 240 35 0 0 chr5 147790869 147790898 -4746361 + (T)n Simple_repeat Simple_repeat 1 29 0 7 1712 1294 27 0 0 chr5 147790898 147791045 -4746214 - B1_Mus1 SINE Alu 0 148 2 7 1712 393 328 0 44 chr5 147791082 147791212 -4746047 - RSINE1 SINE B4 -1 164 41 7 1712 963 106 7 7 chr5 147791212 147791355 -4745904 + B1_Mus1 SINE Alu 2 144 -4 7 1712 555 40 27 22 chr5 147791503 147791601 -4745658 - B1_Mus2 SINE Alu -14 136 44 7 1712 370 263 100 92 chr5 147791921 147792051 -4745208 - MER44D DNA MER2_type -574 131 1 7 1712 521 75 0 25 chr5 147792213 147792301 -4744958 + ORR1B1 LTR MaLR 1 119 -275 7 1712 1862 183 6 21 chr5 147792301 147792630 -4744629 + ORR1B1 LTR MaLR 62 385 -9 7 1712 552 217 0 19 chr5 147794464 147794572 -4742687 + PB1D10 SINE Alu 6 111 -6 7 1712 448 129 153 0 chr5 147795483 147795568 -4741691 - PB1D9 SINE Alu -1 119 22 7 1712 342 276 10 187 chr5 147795498 147795597 -4741662 - ID_B1 SINE B4 -52 172 1 7 1712 876 64 0 0 chr5 147795597 147795707 -4741552 - B2_Mm2 SINE B2 -85 110 1 7 1712 262 307 35 35 chr5 147795790 147795932 -4741327 + MLT1E2 LTR MaLR 41 182 -445 7 1712 399 31 46 0 chr5 147795932 147795997 -4741262 + (TG)n Simple_repeat Simple_repeat 1 68 0 7 1712 215 266 191 23 chr5 147796285 147796416 -4740843 - MIRb SINE MIR -23 245 93 7 1712 435 314 42 36 chr5 147796763 147796955 -4740304 - MLT1D LTR MaLR -311 194 2 7 1712 1290 20 0 7 chr5 147798596 147798744 -4738515 + B1_Mm SINE Alu 1 147 0 7 1712 835 262 28 9 chr5 147799907 147800119 -4737140 - B3 SINE B2 0 216 1 7 1712 856 206 58 12 chr5 147800325 147800497 -4736762 - B3 SINE B2 -35 181 2 7 1712 241 220 116 42 chr5 147800613 147800708 -4736551 + MTEb LTR MaLR 278 379 0 7 1712 1124 130 11 6 chr5 147801029 147801207 -4736052 - URR1B DNA MER1_type -1 224 46 7 1712 845 195 119 21 chr5 147801223 147801417 -4735842 + B3 SINE B2 1 213 -3 7 1712 1209 55 0 0 chr5 147801435 147801580 -4735679 + B1_Mus2 SINE Alu 1 145 -2 7 1712 837 118 88 7 chr5 147801603 147801740 -4735519 + B1_Mus1 SINE Alu 1 148 0 7 1712 245 29 0 29 chr5 147801832 147801867 -4735392 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 7 1712 1298 39 0 0 chr5 147801867 147802022 -4735237 - B2_Mm2 SINE B2 -40 155 1 7 1712 225 222 81 27 chr5 147801963 147802037 -4735222 - ZP3AR Satellite Satellite -108 104 27 7 1712 661 271 23 34 chr5 147802240 147802416 -4734843 + B3A SINE B2 1 174 -24 7 1712 210 276 50 45 chr5 147803589 147803691 -4733568 - MIR3 SINE MIR -53 155 63 7 1712 182 371 18 37 chr5 147803637 147803746 -4733513 - L2a LINE L2 -196 3230 3124 7 1712 351 160 88 0 chr5 147804421 147804546 -4732713 + (CCCA)n Simple_repeat Simple_repeat 4 139 0 7 1712 232 186 68 0 chr5 147806851 147806910 -4730349 + C-rich Low_complexity Low_complexity 2 64 0 7 1712 532 226 52 0 chr5 147807035 147807166 -4730093 + PB1D10 SINE Alu 1 147 -2 7 1712 362 259 45 36 chr5 147808136 147808248 -4729011 - MLT2B3 LTR ERVL -436 118 6 7 1712 1148 178 19 9 chr5 147808471 147808681 -4728578 + B3 SINE B2 3 214 -2 7 1712 443 257 66 9 chr5 147808701 147808807 -4728452 + RSINE1 SINE B4 4 115 -50 7 1712 309 82 0 0 chr5 147808929 147808978 -4728281 + (T)n Simple_repeat Simple_repeat 1 49 0 7 1712 26 0 0 0 chr5 147809458 147809484 -4727775 + AT_rich Low_complexity Low_complexity 1 26 0 7 1712 2708 254 146 13 chr5 147809484 147810401 -4726858 - Lx8 LINE L1 -2 7471 6433 7 1712 851 238 12 21 chr5 147810503 147810703 -4726556 - B3 SINE B2 -14 181 2 7 1712 316 284 118 26 chr5 147810771 147810923 -4726336 + MIR SINE MIR 83 248 -14 7 1712 1089 132 64 25 chr5 147811099 147811301 -4725958 - B3 SINE B2 -5 211 2 7 1712 1081 84 0 0 chr5 147811528 147811671 -4725588 + B1_Mus1 SINE Alu 6 148 0 7 1712 24 32 0 0 chr5 147811671 147811702 -4725557 + AT_rich Low_complexity Low_complexity 1 31 0 7 1712 517 258 12 59 chr5 147811908 147812077 -4725182 + RSINE1 SINE B4 4 164 -1 7 1712 330 66 66 0 chr5 147812094 147812155 -4725104 + (AGGGGG)n Simple_repeat Simple_repeat 6 70 0 7 1712 922 153 17 0 chr5 147812152 147812328 -4724931 + GA-rich Low_complexity Low_complexity 1 179 0 7 1712 270 271 69 28 chr5 147812591 147812762 -4724497 + L1MB3 LINE L1 5953 6156 -27 7 1712 387 0 0 0 chr5 147812763 147812806 -4724453 + (TA)n Simple_repeat Simple_repeat 2 44 0 7 1712 853 224 14 43 chr5 147812939 147813149 -4724110 + B3 SINE B2 2 205 -11 7 1712 802 86 0 0 chr5 147813928 147814044 -4723215 - MusHAL1 LINE L1 -2064 648 533 7 1712 798 60 9 0 chr5 147814550 147814666 -4722593 - L1Md_F2 LINE L1 -12 6570 6454 7 1712 931 177 0 0 chr5 147814832 147814979 -4722280 - B1_Mur2 SINE Alu -2 147 1 7 1712 858 228 68 24 chr5 147814985 147815192 -4722067 - B3 SINE B2 0 216 1 7 1712 2114 110 0 114 chr5 147815441 147815809 -4721450 - ORR1A4 LTR MaLR 0 329 4 7 1712 613 221 66 7 chr5 147815848 147815985 -4721274 - B3 SINE B2 -67 149 5 7 1712 2001 209 22 27 chr5 147816765 147816972 -4720287 - MTD LTR MaLR -8 411 210 7 1712 243 61 0 0 chr5 147816972 147817005 -4720254 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1712 1069 81 0 0 chr5 147817005 147817141 -4720118 - B1_Mus2 SINE Alu -11 136 1 7 1712 2001 209 22 27 chr5 147817141 147817340 -4719919 - MTD LTR MaLR -210 209 7 7 1712 239 378 44 26 chr5 147818141 147818255 -4719004 - ID_B1 SINE B4 -13 211 96 7 1712 700 159 210 105 chr5 147819216 147819417 -4717842 + B3 SINE B2 12 214 -2 7 1712 2965 40 78 3 chr5 147819665 147820037 -4717222 + MTB LTR MaLR 1 400 0 7 1712 1207 65 0 13 chr5 147820436 147820593 -4716666 - B2_Mm2 SINE B2 -40 155 1 7 1712 1019 201 29 10 chr5 147820613 147820797 -4716462 + B3 SINE B2 1 188 -28 7 1712 423 0 0 0 chr5 147820797 147820844 -4716415 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1712 1019 201 29 10 chr5 147820844 147820865 -4716394 + B3 SINE B2 189 209 -7 7 1712 533 214 101 51 chr5 147820936 147821074 -4716185 + B1_Mur1 SINE Alu 5 149 0 7 1712 297 269 39 5 chr5 147821193 147821307 -4715952 + PB1D7 SINE Alu 1 117 -3 7 1712 409 349 89 20 chr5 147821473 147821675 -4715584 + MER2 DNA MER2_type 14 229 -116 7 1712 428 226 164 9 chr5 147822181 147822297 -4714962 - B1_Mur1 SINE Alu -3 146 13 7 1712 261 0 0 0 chr5 147822763 147822792 -4714467 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1712 285 277 139 0 chr5 147822848 147822949 -4714310 + PB1 SINE Alu 1 115 -12 7 1712 365 300 11 0 chr5 147823203 147823293 -4713966 + B1F SINE Alu 1 91 -58 7 1712 343 270 11 28 chr5 147823316 147823336 -4713923 + ID SINE ID 73 82 -142 7 1712 482 226 0 0 chr5 147823336 147823420 -4713839 + B1_Mus2 SINE Alu 3 86 -61 7 1712 273 196 0 0 chr5 147823443 147823499 -4713760 + CT-rich Low_complexity Low_complexity 1 56 0 7 1712 187 167 0 0 chr5 147823548 147823578 -4713681 + MIRm SINE MIR 220 249 -27 7 1712 661 281 116 6 chr5 147823593 147823765 -4713494 + B3A SINE B2 1 191 -7 7 1712 2845 68 37 0 chr5 147823995 147824376 -4712883 - MTB LTR MaLR -5 395 1 8 1712 495 261 44 7 chr5 147824497 147824632 -4712627 + B1F SINE Alu 2 141 -8 8 1712 269 303 118 31 chr5 147824724 147824952 -4712307 + Lx8 LINE L1 7038 7285 -188 8 1712 297 279 38 12 chr5 147825190 147825270 -4711989 + ID4 SINE ID 1 82 -1 8 1712 956 143 14 0 chr5 147826047 147826187 -4711072 - B1_Mur3 SINE Alu -6 143 2 8 1712 848 214 10 74 chr5 147826216 147826418 -4710841 + B3A SINE B2 2 190 -8 8 1712 1396 55 55 0 chr5 147826716 147826898 -4710361 + B2_Mm2 SINE B2 2 193 -2 8 1712 387 75 468 0 chr5 147827323 147827417 -4709842 - B2_Mm2 SINE B2 0 195 58 8 1712 32 0 0 0 chr5 147827417 147827449 -4709810 + AT_rich Low_complexity Low_complexity 1 32 0 8 1712 793 75 338 0 chr5 147827496 147827629 -4709630 - B2_Mm1t SINE B2 -14 179 2 8 1712 293 219 95 131 chr5 147828200 147828337 -4708922 - MER33 DNA MER1_type -1 323 192 8 1712 339 85 0 0 chr5 147829663 147829710 -4707549 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1712 592 208 201 0 chr5 147830892 147831041 -4706218 + B3A SINE B2 3 181 -17 8 1712 1852 45 0 0 chr5 147831783 147832004 -4705255 + L1_Mus1 LINE L1 6346 6566 -1 8 1712 189 0 0 0 chr5 147832035 147832056 -4705203 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 8 1712 1281 34 0 0 chr5 147832956 147833103 -4704156 + B1_Mm SINE Alu 1 147 0 8 1712 243 0 0 0 chr5 147833103 147833130 -4704129 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1712 640 234 193 111 chr5 147833162 147833504 -4703755 + MTEa LTR MaLR 10 379 0 8 1712 833 222 122 79 chr5 147833838 147834117 -4703142 + B4A SINE B4 2 292 0 8 1712 554 175 7 0 chr5 147834117 147834260 -4702999 + (CA)n Simple_repeat Simple_repeat 1 144 0 8 1712 491 138 0 175 chr5 147834457 147834554 -4702705 - B1_Mur2 SINE Alu 0 120 41 8 1712 804 205 61 15 chr5 147834702 147834900 -4702359 - B3 SINE B2 -9 207 1 8 1712 277 223 0 0 chr5 147835517 147835576 -4701683 + B1F SINE Alu 52 142 -7 8 1712 394 277 0 29 chr5 147835581 147835685 -4701574 + B4A SINE B4 37 137 -155 8 1712 207 214 0 0 chr5 147836690 147836732 -4700527 + A-rich Low_complexity Low_complexity 3 44 0 8 1712 922 284 83 45 chr5 147836762 147837161 -4700098 + BGLII_B LTR ERVK 1 414 -27 8 1712 351 280 95 34 chr5 147837912 147838060 -4699199 - L1M4 LINE L1 -790 5356 5200 8 1712 304 357 83 0 chr5 147838060 147838217 -4699042 - L1M4 LINE L1 -1053 5093 4924 8 1712 541 120 93 2 chr5 147838977 147839085 -4698174 - B1_Mur4 SINE Alu -33 116 2 8 1712 289 252 98 104 chr5 147839085 147839161 -4698098 - MT2B LTR ERVL -439 162 88 8 1712 204 186 0 0 chr5 147840038 147840097 -4697162 + (CA)n Simple_repeat Simple_repeat 2 60 0 8 1712 24 0 0 0 chr5 147840100 147840124 -4697135 + AT_rich Low_complexity Low_complexity 1 24 0 8 1712 333 0 0 0 chr5 147842743 147842780 -4694479 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1712 438 212 0 117 chr5 147843849 147843977 -4693282 + MT2B LTR ERVL 152 264 -337 8 1712 983 114 0 0 chr5 147843872 147844012 -4693247 + B1_Mus1 SINE Alu 9 148 0 8 1712 360 0 0 0 chr5 147844337 147844377 -4692882 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1712 486 315 81 65 chr5 147846488 147846967 -4690292 + L1MA6 LINE L1 5439 5925 -375 8 1712 549 237 17 8 chr5 147847247 147847366 -4689893 + PB1D7 SINE Alu 1 120 0 8 1712 273 262 0 110 chr5 147847442 147847515 -4689744 + PB1D9 SINE Alu 8 72 -76 8 1712 21 36 0 0 chr5 147847569 147847597 -4689662 + AT_rich Low_complexity Low_complexity 1 28 0 8 1712 212 210 60 145 chr5 147848031 147848120 -4689139 + PB1D10 SINE Alu 10 87 -30 8 1712 1295 224 186 6 chr5 147848120 147848475 -4688784 - MTD LTR MaLR 0 419 1 8 1712 212 210 60 145 chr5 147848475 147848502 -4688757 + PB1D10 SINE Alu 88 116 -1 8 1712 253 287 126 23 chr5 147848570 147848745 -4688514 + L1MB7 LINE L1 5983 6175 -9 8 26 480 281 66 0 chr5 147849190 147849311 -4687948 + ID_B1 SINE B4 86 214 -10 8 1713 180 77 0 0 chr5 147849320 147849346 -4687913 + (CA)n Simple_repeat Simple_repeat 1 26 0 8 1713 392 185 171 78 chr5 147849376 147849505 -4687754 + B1_Mm SINE Alu 5 145 -2 8 1713 561 284 109 73 chr5 147849521 147849758 -4687501 + B4 SINE B4 7 253 -39 8 1713 189 0 0 0 chr5 147849758 147849779 -4687480 + (CACAC)n Simple_repeat Simple_repeat 2 22 0 8 1713 561 284 109 73 chr5 147849779 147849815 -4687444 + B4 SINE B4 254 290 -2 8 1713 305 289 11 57 chr5 147849889 147849977 -4687282 + PB1 SINE Alu 30 113 -14 8 1713 387 284 28 0 chr5 147850571 147850712 -4686547 + L1M4 LINE L1 14 158 -6384 8 1713 440 311 30 90 chr5 147850942 147851108 -4686151 + ID_B1 SINE B4 21 176 -48 8 1713 258 116 0 0 chr5 147851737 147851780 -4685479 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 8 1713 537 269 44 13 chr5 147852549 147852707 -4684552 - RSINE1 SINE B4 0 165 3 8 1713 405 157 0 14 chr5 147853015 147853086 -4684173 - PB1D9 SINE Alu -1 119 50 8 1713 547 263 71 19 chr5 147855448 147855603 -4681656 - RSINE1 SINE B4 0 165 3 8 1713 494 183 118 0 chr5 147855654 147855747 -4681512 + PB1D10 SINE Alu 5 108 -9 8 1713 538 231 162 0 chr5 147856958 147857118 -4680141 + B3 SINE B2 2 187 -29 8 1713 465 148 0 0 chr5 147857164 147857245 -4680014 + (TC)n Simple_repeat Simple_repeat 1 81 0 8 1713 639 273 18 0 chr5 147857800 147857965 -4679294 - Lx8 LINE L1 -518 6955 6788 8 1713 249 250 0 0 chr5 147858523 147858579 -4678680 + L1MD LINE L1 5772 5827 -532 8 1713 210 71 0 0 chr5 147859245 147859273 -4677986 + (CA)n Simple_repeat Simple_repeat 1 28 0 8 1713 296 259 103 7 chr5 147859322 147859458 -4677801 - RSINE1 SINE B4 -14 151 3 8 1713 550 199 171 32 chr5 147859527 147859714 -4677545 - B3 SINE B2 -3 213 1 8 1713 227 247 26 64 chr5 147859724 147859802 -4677457 + ID_B1 SINE B4 148 222 -2 8 1713 285 291 47 28 chr5 147861260 147861366 -4675893 + PB1D10 SINE Alu 1 108 -9 8 1713 825 234 60 10 chr5 147861782 147861981 -4675278 - B3 SINE B2 -7 209 1 8 1713 608 153 493 0 chr5 147862114 147862264 -4674995 - URR1B DNA MER1_type -1 224 1 8 1713 899 309 201 27 chr5 147862822 147863649 -4673610 + L2 LINE L2 1817 2787 -632 8 1713 314 351 71 24 chr5 147864175 147864385 -4672874 - MIR SINE MIR -10 252 33 8 1713 432 0 0 0 chr5 147864395 147864443 -4672816 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1713 770 194 153 16 chr5 147864667 147864856 -4672403 - B3 SINE B2 -1 215 1 8 1713 545 331 106 11 chr5 147865617 147865986 -4671273 + Lx8 LINE L1 6815 7218 -255 8 1713 21 71 0 0 chr5 147866259 147866301 -4670958 + AT_rich Low_complexity Low_complexity 1 42 0 8 1713 290 301 124 29 chr5 147866626 147866763 -4670496 - L2b LINE L2 -6 3369 3220 8 1713 497 263 87 14 chr5 147866763 147866971 -4670288 - MER33 DNA MER1_type -10 314 92 8 1713 1162 107 0 0 chr5 147866989 147867138 -4670121 - B1_Mur4 SINE Alu -1 149 1 8 1713 712 249 171 0 chr5 147867151 147867332 -4669927 - B3 SINE B2 -4 212 1 8 1713 326 42 21 0 chr5 147868078 147868126 -4669133 + (CA)n Simple_repeat Simple_repeat 1 49 0 8 1713 247 247 254 42 chr5 147868201 147868366 -4668893 - MIR SINE MIR -41 221 22 8 1713 417 242 11 5 chr5 147869088 147869204 -4668055 - B1_Mur1 SINE Alu -5 144 1 8 1713 477 246 241 7 chr5 147869294 147869531 -4667728 - L1M5 LINE L1 -606 5753 5460 8 1713 1112 175 45 0 chr5 147869718 147869918 -4667341 - B3 SINE B2 -6 210 2 8 1713 270 0 0 0 chr5 147870873 147870903 -4666356 + (CCA)n Simple_repeat Simple_repeat 2 31 0 8 1713 549 0 0 0 chr5 147871474 147871535 -4665724 + (GAGAA)n Simple_repeat Simple_repeat 3 63 0 8 1713 32 75 0 0 chr5 147871934 147872001 -4665258 + AT_rich Low_complexity Low_complexity 1 67 0 8 1713 35 63 0 0 chr5 147872031 147872094 -4665165 + AT_rich Low_complexity Low_complexity 1 63 0 8 1713 528 203 60 31 chr5 147872122 147872252 -4665007 - ID_B1 SINE B4 -31 193 58 8 1713 359 202 0 11 chr5 147872296 147872386 -4664873 + CT-rich Low_complexity Low_complexity 1 89 0 8 1713 384 152 215 11 chr5 147872404 147872497 -4664762 - PB1D9 SINE Alu -6 114 3 8 1713 1231 34 0 45 chr5 147872878 147873032 -4664227 + B1_Mus1 SINE Alu 2 148 0 8 1713 180 0 0 0 chr5 147873032 147873052 -4664207 + (A)n Simple_repeat Simple_repeat 1 20 0 8 1713 314 218 9 187 chr5 147873572 147873679 -4663580 - B1F1 SINE Alu -61 88 1 8 1713 526 219 68 38 chr5 147873717 147873850 -4663409 + B1F1 SINE Alu 13 149 0 8 1713 320 308 66 59 chr5 147873718 147873870 -4663389 + B4A SINE B4 99 251 -41 8 1713 1278 59 59 6 chr5 147874180 147874350 -4662909 + B2_Mm2 SINE B2 3 181 -14 8 1713 212 188 21 0 chr5 147874359 147874407 -4662852 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 8 1713 181 293 0 0 chr5 147875833 147875874 -4661385 - L4 LINE RTE -223 1806 1766 8 1713 1179 271 32 27 chr5 147876239 147876641 -4660618 + Lx8 LINE L1 6826 7229 -244 8 1713 261 0 0 0 chr5 147876659 147876688 -4660571 + (CTA)n Simple_repeat Simple_repeat 3 31 0 8 1713 231 146 0 0 chr5 147876688 147876729 -4660530 + (CACCAT)n Simple_repeat Simple_repeat 5 45 0 8 1713 249 313 108 61 chr5 147876989 147877203 -4660056 - MLT1A1 LTR MaLR -10 398 165 8 1713 431 301 44 0 chr5 147877396 147877509 -4659750 + B4 SINE B4 2 119 -173 9 1713 2628 175 88 4 chr5 147877728 147878233 -4659026 - RMER4B LTR ERVK -38 547 15 9 1713 1304 98 49 0 chr5 147878233 147878416 -4658843 + B2_Mm2 SINE B2 2 193 -2 9 1713 23 0 0 0 chr5 147878463 147878486 -4658773 + AT_rich Low_complexity Low_complexity 1 23 0 9 1713 726 295 66 75 chr5 147878516 147878601 -4658658 + MTE2b LTR MaLR 1 89 -290 9 1713 1533 202 56 61 chr5 147878601 147878976 -4658283 - ORR1D1 LTR MaLR 0 374 2 9 1713 726 295 66 75 chr5 147878976 147879224 -4658035 + MTE2b LTR MaLR 90 330 -49 9 1713 225 0 0 0 chr5 147879363 147879388 -4657871 + (T)n Simple_repeat Simple_repeat 1 25 0 9 1713 1194 61 0 0 chr5 147879388 147879535 -4657724 - B1_Mus2 SINE Alu 0 147 1 9 1713 1205 61 0 0 chr5 147879879 147880026 -4657233 + B1_Mus1 SINE Alu 2 148 0 9 1713 198 91 0 0 chr5 147880026 147880059 -4657200 + (A)n Simple_repeat Simple_repeat 1 33 0 9 1713 1091 264 170 45 chr5 147880198 147881217 -4656042 + L1MB2 LINE L1 4949 6094 -77 9 1713 313 262 94 31 chr5 147882067 147882328 -4654931 - MER33 DNA MER1_type -14 310 1 9 1713 190 200 50 0 chr5 147883993 147884033 -4653226 - L2a LINE L2 -63 3363 3322 9 1713 195 42 0 0 chr5 147884348 147884372 -4652887 + (TG)n Simple_repeat Simple_repeat 2 25 0 9 1713 25 0 0 0 chr5 147884392 147884417 -4652842 + AT_rich Low_complexity Low_complexity 1 25 0 9 1713 1162 68 7 0 chr5 147884417 147884563 -4652696 - B1_Mus1 SINE Alu -1 147 1 9 1713 674 222 16 8 chr5 147884837 147884964 -4652295 - B1_Mur2 SINE Alu -16 133 6 9 1713 417 285 7 84 chr5 147884964 147884979 -4652280 - ID_B1 SINE B4 -16 208 78 9 1713 787 147 28 7 chr5 147885008 147885152 -4652107 - B1_Mur4 SINE Alu -1 149 3 9 1713 470 242 0 48 chr5 147885157 147885283 -4651976 - PB1D7 SINE Alu 0 120 1 9 1713 296 369 60 13 chr5 147885594 147885745 -4651514 - MIRb SINE MIR -8 260 103 9 1713 906 104 73 7 chr5 147885842 147885978 -4651281 + B1_Mur3 SINE Alu 5 149 0 9 1713 211 235 110 64 chr5 147887309 147887324 -4649935 + B4 SINE B4 74 93 -199 9 1713 432 143 74 42 chr5 147887324 147887419 -4649840 + PB1D9 SINE Alu 2 99 -21 9 1713 287 261 65 40 chr5 147890580 147890704 -4646555 + MLT1K LTR MaLR 461 587 -8 9 1713 1092 58 65 0 chr5 147890792 147890930 -4646329 - B1_Mus2 SINE Alu 0 147 1 9 1713 405 211 98 22 chr5 147891123 147891215 -4646044 - RSINE1 SINE B4 -61 104 6 9 1713 237 348 118 34 chr5 147891450 147891569 -4645690 - B4 SINE B4 0 292 164 9 1713 301 272 37 55 chr5 147891526 147891635 -4645624 - PB1D9 SINE Alu -1 119 13 9 1713 469 321 108 56 chr5 147891602 147891797 -4645462 - B4 SINE B4 -86 206 2 9 1713 311 306 45 18 chr5 147892161 147892271 -4644988 + PB1D10 SINE Alu 2 114 -3 9 1713 768 136 80 0 chr5 147892300 147892425 -4644834 + B1_Mus2 SINE Alu 13 147 0 9 1713 343 76 609 0 chr5 147892581 147892673 -4644586 - B1_Mus1 SINE Alu 0 148 1 9 1713 364 273 118 0 chr5 147893719 147893829 -4643430 + B1_Mm SINE Alu 4 126 -21 9 1713 930 140 29 0 chr5 147894409 147894545 -4642714 - B1_Mur2 SINE Alu -9 140 1 9 1713 22 0 0 0 chr5 147894545 147894567 -4642692 + AT_rich Low_complexity Low_complexity 1 22 0 9 1713 495 110 0 0 chr5 147894741 147894788 -4642471 + (T)n Simple_repeat Simple_repeat 1 47 0 9 1713 1232 35 14 0 chr5 147894788 147894933 -4642326 - B1_Mus2 SINE Alu 0 147 1 9 1713 495 110 0 0 chr5 147894933 147894967 -4642292 + (T)n Simple_repeat Simple_repeat 1 34 0 9 1713 796 132 217 0 chr5 147895286 147895438 -4641821 + B2_Mm2 SINE B2 2 186 -9 9 1713 499 239 35 26 chr5 147896397 147896513 -4640746 + PB1D10 SINE Alu 1 117 0 9 1713 508 198 0 29 chr5 147897145 147897249 -4640010 + PB1D10 SINE Alu 1 101 -16 9 1713 348 304 9 29 chr5 147897468 147897573 -4639686 + MIRb SINE MIR 115 217 -51 9 1713 1081 138 85 0 chr5 147897748 147897936 -4639323 + MTC LTR MaLR 5 208 -213 9 1713 841 153 22 14 chr5 147897946 147898085 -4639174 + B1_Mur2 SINE Alu 10 149 0 9 1713 591 112 0 0 chr5 147898092 147898181 -4639078 + (GA)n Simple_repeat Simple_repeat 1 89 0 9 1713 840 172 108 66 chr5 147898181 147898393 -4638866 + MTC LTR MaLR 196 416 -3 9 1713 453 331 139 20 chr5 147898538 147898966 -4638293 - MLT1F2 LTR MaLR -1 559 1 9 1713 1184 69 0 0 chr5 147899309 147899454 -4637805 - B1_Mm SINE Alu -1 146 2 9 1713 304 262 49 116 chr5 147899590 147899642 -4637617 + L2a LINE L2 3253 3300 -126 9 1713 195 100 0 0 chr5 147899642 147899672 -4637587 + (CA)n Simple_repeat Simple_repeat 1 30 0 9 1713 304 262 49 116 chr5 147899672 147899783 -4637476 + L2a LINE L2 3301 3405 -21 9 1713 1165 50 7 0 chr5 147900393 147900533 -4636726 + B1_Mus1 SINE Alu 2 142 -6 9 1713 3780 239 115 21 chr5 147900599 147901738 -4635521 - Lx8 LINE L1 0 7473 6228 9 1713 223 338 14 0 chr5 147902468 147902542 -4634717 - MIRc SINE MIR -118 150 76 9 1713 208 352 80 0 chr5 147903526 147903614 -4633645 + MIRb SINE MIR 42 136 -132 9 1713 594 66 0 0 chr5 147904003 147904094 -4633165 + L1Md_F2 LINE L1 6492 6582 0 9 1713 240 111 0 0 chr5 147904111 147904147 -4633112 + (GAA)n Simple_repeat Simple_repeat 2 37 0 9 1713 588 224 66 22 chr5 147904605 147904742 -4632517 - B1F1 SINE Alu 0 149 7 9 1713 933 212 14 32 chr5 147905546 147905765 -4631494 - B3 SINE B2 0 216 2 9 1713 1197 62 7 0 chr5 147906877 147907023 -4630236 - B1_Mm SINE Alu 0 147 1 9 1713 348 24 0 0 chr5 147907394 147907435 -4629824 + (CA)n Simple_repeat Simple_repeat 2 42 0 9 1713 190 365 52 9 chr5 147907509 147907625 -4629634 + MIR SINE MIR 16 136 -126 9 1713 367 236 70 108 chr5 147907828 147907985 -4629274 + MT2B LTR ERVL 108 258 -343 9 1713 881 183 0 14 chr5 147907885 147908029 -4629230 + B1_Mur2 SINE Alu 8 149 0 9 1713 279 197 141 0 chr5 147908042 147908113 -4629146 + Zaphod DNA Tip100 448 528 -3503 9 1713 307 266 85 0 chr5 147908133 147908227 -4629032 + ORR1E LTR MaLR 19 120 -239 9 1713 364 310 147 18 chr5 147908895 147909384 -4627875 - L1MA8 LINE L1 -88 6203 5652 9 1713 225 244 140 75 chr5 147909476 147909494 -4627765 - PB1D10 SINE Alu -18 99 41 9 1713 250 215 200 0 chr5 147909494 147909559 -4627700 - ID_B1 SINE B4 -55 169 92 9 1713 318 302 16 43 chr5 147909601 147909722 -4627537 - B1F SINE Alu 0 127 3 9 1713 321 240 123 19 chr5 147910036 147910142 -4627117 - PB1D7 SINE Alu -3 117 1 9 1713 303 342 90 0 chr5 147910782 147910893 -4626366 + RSINE1 SINE B4 39 159 -6 9 1713 470 186 119 10 chr5 147911048 147911158 -4626101 - B1_Mm SINE Alu -1 116 2 9 1713 21 57 0 0 chr5 147911562 147911597 -4625662 + AT_rich Low_complexity Low_complexity 1 35 0 9 1713 755 232 239 85 chr5 147911637 147911910 -4625349 - Lx5 LINE L1 -4 7054 6744 9 1713 243 282 0 184 chr5 147911928 147912015 -4625244 + ID4_ SINE ID 2 72 -11 9 1713 393 22 0 0 chr5 147912015 147912061 -4625198 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1713 664 170 45 0 chr5 147913297 147913409 -4623850 + RSINE1 SINE B4 20 136 -29 9 1713 1105 251 100 17 chr5 147913681 147913792 -4623467 - Lx8 LINE L1 -7 7466 7349 9 1713 189 74 0 0 chr5 147913792 147913819 -4623440 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 9 1713 1173 58 0 0 chr5 147913819 147913957 -4623302 - B1_Mus2 SINE Alu -9 138 1 9 1713 1105 251 100 17 chr5 147913957 147914253 -4623006 - Lx8 LINE L1 -125 7348 7025 9 1713 552 156 475 0 chr5 147914289 147914430 -4622829 - B3 SINE B2 -7 209 2 9 1713 304 291 0 12 chr5 147914434 147914514 -4622745 - ID_B1 SINE B4 -3 221 143 9 1713 363 96 0 0 chr5 147914520 147914572 -4622687 + (TG)n Simple_repeat Simple_repeat 1 52 0 9 1713 661 244 1 16 chr5 147914578 147914727 -4622532 - B3A SINE B2 -64 152 6 9 1713 365 221 278 17 chr5 147914730 147914845 -4622414 - ID_B1 SINE B4 -71 153 9 9 1713 675 310 70 33 chr5 147915607 147915937 -4621322 - MER77 LTR ERVL -9 598 257 9 1713 392 270 122 30 chr5 147916209 147916373 -4620886 + L1MC4a LINE L1 6832 7010 -872 9 1713 2329 129 104 5 chr5 147916391 147916774 -4620485 + MTC LTR MaLR 1 421 0 9 1713 394 270 61 68 chr5 147916926 147917073 -4620186 + B1F SINE Alu 3 148 -1 9 1713 443 232 0 12 chr5 147917194 147917277 -4619982 - ID4_ SINE ID -1 82 1 9 1713 342 292 113 0 chr5 147917475 147917643 -4619616 + L1M5 LINE L1 5544 5730 -434 9 1713 742 222 110 11 chr5 147917865 147918056 -4619203 + B3 SINE B2 1 210 -6 9 1713 281 268 111 14 chr5 147918130 147918202 -4619057 + ID4 SINE ID 3 81 -2 9 1713 1490 236 62 11 chr5 147918297 147918670 -4618589 - MTC LTR MaLR -9 412 21 9 1713 280 228 0 102 chr5 147918731 147918819 -4618440 - ID4 SINE ID -1 82 4 9 1713 253 155 48 0 chr5 147918877 147918961 -4618298 + (CAGA)n Simple_repeat Simple_repeat 3 90 0 9 1713 519 257 56 56 chr5 147918982 147919180 -4618079 + B3A SINE B2 1 198 0 9 1713 298 237 137 21 chr5 147919294 147919389 -4617870 - RSINE1 SINE B4 -12 153 48 9 1713 765 74 0 36 chr5 147919401 147919513 -4617746 - B1_Mur4 SINE Alu -2 148 41 9 1713 385 237 42 171 chr5 147919513 147919605 -4617654 - ID_B1 SINE B4 -68 223 14 9 1713 297 317 67 101 chr5 147919619 147919798 -4617461 - MER5B DNA MER1_type -5 173 1 9 1713 367 292 0 53 chr5 147921980 147922074 -4615185 - B1F1 SINE Alu -16 133 45 1 1713 219 88 0 0 chr5 147922639 147922673 -4614586 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1 1713 296 44 44 0 chr5 147923352 147923397 -4613862 + (CAGA)n Simple_repeat Simple_repeat 1 47 0 1 1713 216 160 0 39 chr5 147923627 147923679 -4613580 + A-rich Low_complexity Low_complexity 2 51 0 1 1713 526 268 107 53 chr5 147923687 147923837 -4613422 + RSINE1 SINE B4 6 163 -2 1 1713 539 197 139 0 chr5 147924963 147925085 -4612174 + B1F SINE Alu 11 149 0 1 1713 254 200 11 86 chr5 147925090 147925183 -4612076 + L1MEc LINE L1 1344 1429 -4971 1 1713 405 299 18 65 chr5 147925194 147925362 -4611897 + MTEa LTR MaLR 32 191 -188 1 1713 320 356 88 7 chr5 147925445 147925592 -4611667 + MTE-int LTR MaLR 1351 1509 0 1 1713 580 309 119 65 chr5 147925640 147925976 -4611283 + MTEb LTR MaLR 12 365 -14 1 1713 598 241 14 7 chr5 147926099 147926245 -4611014 + B1F SINE Alu 2 148 -1 1 1713 261 243 0 0 chr5 147926546 147926620 -4610639 + T-rich Low_complexity Low_complexity 1 74 0 1 1713 861 231 65 0 chr5 147926723 147926909 -4610350 - ID_B1 SINE B4 -4 220 23 1 1713 567 206 55 8 chr5 147927121 147927248 -4610011 + B1_Mur2 SINE Alu 1 133 -16 1 1713 839 258 46 5 chr5 147927269 147927464 -4609795 + B3 SINE B2 1 203 -13 1 1713 1075 182 28 47 chr5 147927639 147927852 -4609407 + B3 SINE B2 1 209 -7 1 1713 1238 90 6 0 chr5 147927929 147928095 -4609164 - B2_Mm2 SINE B2 -28 167 1 1 1713 229 291 22 44 chr5 147928362 147928452 -4608807 + L1M2 LINE L1 2956 3043 -3100 1 1713 554 99 36 20 chr5 147928560 147928685 -4608574 + B2_Mm2 SINE B2 2 130 -86 1 1713 246 243 71 0 chr5 147928686 147928756 -4608503 + L1MDa LINE L1 108 182 -6451 1 1713 411 73 0 0 chr5 147929251 147929306 -4607953 + (TTA)n Simple_repeat Simple_repeat 2 56 0 1 1713 941 110 27 33 chr5 147929312 147929462 -4607797 - B1_Mur4 SINE Alu 0 150 2 1 1713 1133 180 48 19 chr5 147929474 147929683 -4607576 - B3 SINE B2 0 216 2 1 1713 309 82 0 0 chr5 147929691 147929740 -4607519 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1713 293 100 0 20 chr5 147929903 147929954 -4607305 + (CCCCG)n Simple_repeat Simple_repeat 2 51 0 1 1713 483 48 0 0 chr5 147930264 147930326 -4606933 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1713 246 62 0 0 chr5 147930383 147930415 -4606844 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1713 264 77 0 0 chr5 147930699 147930738 -4606521 + (C)n Simple_repeat Simple_repeat 1 39 0 1 1713 1290 115 15 35 chr5 147931131 147931330 -4605929 + B2_Mm2 SINE B2 1 195 0 1 1713 1258 41 0 0 chr5 147931342 147931489 -4605770 + B1_Mm SINE Alu 1 147 0 1 1713 183 130 38 38 chr5 147931544 147931624 -4605635 + (TTATA)n Simple_repeat Simple_repeat 5 84 0 1 1713 875 248 28 28 chr5 147931821 147932037 -4605222 - B3 SINE B2 0 216 1 1 1713 369 0 0 0 chr5 147932285 147932326 -4604933 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1713 634 250 23 0 chr5 147932335 147932467 -4604792 - B1_Mur2 SINE Alu -13 136 2 1 1713 744 178 288 0 chr5 147932497 147932660 -4604599 + B3 SINE B2 1 210 -6 1 1713 421 259 0 0 chr5 147932707 147932788 -4604471 + ID4_ SINE ID 3 83 0 1 1713 601 247 176 32 chr5 147932844 147933032 -4604227 - B3 SINE B2 -1 215 1 1 1713 643 230 6 69 chr5 147933100 147933259 -4604000 + B1_Mur4 SINE Alu 2 150 0 1 1713 229 26 0 50 chr5 147933263 147933303 -4603956 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1 1713 396 0 0 0 chr5 147933315 147933359 -4603900 + (GA)n Simple_repeat Simple_repeat 2 45 0 1 1713 218 211 38 19 chr5 147933405 147933458 -4603801 + B1_Mur3 SINE Alu 95 148 -1 1 1713 984 294 40 65 chr5 147933479 147933909 -4603350 - RLTR20A2 LTR ERVK 0 578 160 1 1713 207 0 0 0 chr5 147933942 147933965 -4603294 + (CA)n Simple_repeat Simple_repeat 1 23 0 1 1713 216 0 0 0 chr5 147934133 147934157 -4603102 + (TG)n Simple_repeat Simple_repeat 1 24 0 1 1713 504 101 0 0 chr5 147934157 147934246 -4603013 + (GA)n Simple_repeat Simple_repeat 2 90 0 1 1713 916 268 14 14 chr5 147934251 147934463 -4602796 - B4 SINE B4 0 292 81 1 1713 527 291 64 0 chr5 147934522 147934663 -4602596 - B3 SINE B2 -8 208 59 1 1713 233 196 52 35 chr5 147934856 147934914 -4602345 + MTEb LTR MaLR 300 358 -21 1 1713 995 100 0 11 chr5 147935709 147935891 -4601368 + (GA)n Simple_repeat Simple_repeat 1 180 0 1 1713 267 276 0 0 chr5 147936965 147937063 -4600196 + (TG)n Simple_repeat Simple_repeat 2 99 0 1 1713 241 266 15 15 chr5 147937221 147937286 -4599973 + GA-rich Low_complexity Low_complexity 3 67 0 1 1713 1716 197 84 0 chr5 147937850 147938221 -4599038 + MTD LTR MaLR 3 404 -15 1 1713 1772 152 97 26 chr5 147938354 147938705 -4598554 - ORR1B1 LTR MaLR 0 394 19 1 1713 228 227 55 118 chr5 147938748 147938858 -4598401 + L1MB4 LINE L1 6015 6117 -63 1 1713 304 135 25 63 chr5 147939014 147939093 -4598166 + B2_Mm2 SINE B2 117 192 -3 1 1713 310 236 44 0 chr5 147939136 147939213 -4598046 + ORR1D1 LTR MaLR 251 333 -41 1 1713 1052 262 121 34 chr5 147939198 147939270 -4597989 - MTC-int LTR MaLR -175 923 846 1 1713 185 0 0 39 chr5 147939270 147939296 -4597963 + (CAAAG)n Simple_repeat Simple_repeat 1 25 0 1 1713 1492 206 34 18 chr5 147939296 147939602 -4597657 - MTC-int LTR MaLR -323 935 512 1 1713 2062 203 123 38 chr5 147940074 147940580 -4596679 - MTC-int LTR MaLR -694 886 1 1 1713 3058 114 2 2 chr5 147940580 147941001 -4596258 - MTC LTR MaLR 0 421 1 1 1713 248 330 34 11 chr5 147941050 147941139 -4596120 - PB1D10 SINE Alu -22 95 5 1 1713 815 233 132 49 chr5 147941199 147941465 -4595794 + B4A SINE B4 2 289 -3 1 1713 267 104 0 0 chr5 147941499 147941547 -4595712 + (T)n Simple_repeat Simple_repeat 1 48 0 1 1713 1261 48 0 0 chr5 147941547 147941693 -4595566 - B1_Mus2 SINE Alu 0 147 2 1 1713 222 36 0 0 chr5 147941754 147941782 -4595477 - B3 SINE B2 -186 30 3 1 1713 186 150 0 0 chr5 147941886 147941926 -4595333 + (CACCC)n Simple_repeat Simple_repeat 3 42 0 1 1713 362 310 19 25 chr5 147941958 147942117 -4595142 + RLTR15 LTR ERVK 186 343 -16 1 1713 468 35 0 0 chr5 147942167 147942225 -4595034 + (CA)n Simple_repeat Simple_repeat 1 58 0 1 1713 654 257 40 37 chr5 147942466 147942741 -4594518 + B1_Mur1 SINE Alu 23 298 -16 1 1713 392 202 93 47 chr5 147942787 147942950 -4594309 + B3 SINE B2 15 216 0 1 1713 267 54 0 0 chr5 147943412 147943449 -4593810 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1713 387 0 0 0 chr5 147944114 147944157 -4593102 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1713 378 0 0 0 chr5 147944157 147944198 -4593061 + (GA)n Simple_repeat Simple_repeat 2 43 0 1 1713 285 29 0 0 chr5 147944305 147944339 -4592920 + (TGG)n Simple_repeat Simple_repeat 1 34 0 1 1713 363 207 34 11 chr5 147944450 147944538 -4592721 + PB1D10 SINE Alu 27 116 -1 1 1713 23 0 0 0 chr5 147944575 147944598 -4592661 + AT_rich Low_complexity Low_complexity 1 23 0 1 1713 760 154 107 8 chr5 147944598 147944729 -4592530 + B1_Mur3 SINE Alu 1 144 -5 1 1713 1123 161 22 54 chr5 147944741 147944964 -4592295 - B3 SINE B2 0 216 1 1 1713 189 0 0 0 chr5 147945760 147945781 -4591478 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1713 480 207 0 0 chr5 147946925 147947036 -4590223 + (CA)n Simple_repeat Simple_repeat 2 112 0 1 1713 24 0 0 0 chr5 147948069 147948093 -4589166 + AT_rich Low_complexity Low_complexity 1 24 0 1 1713 676 239 190 22 chr5 147948352 147948536 -4588723 + B3 SINE B2 2 216 0 1 1713 879 149 94 7 chr5 147948653 147948802 -4588457 + B3 SINE B2 2 163 -53 1 1713 227 300 0 28 chr5 147948848 147948920 -4588339 + C-rich Low_complexity Low_complexity 4 73 0 1 1713 235 113 0 36 chr5 147949047 147949102 -4588157 + (TA)n Simple_repeat Simple_repeat 1 53 0 1 1713 870 206 0 6 chr5 147949230 147949386 -4587873 + RSINE1 SINE B4 1 155 -10 1 1713 693 170 0 0 chr5 147949389 147949583 -4587676 + GA-rich Low_complexity Low_complexity 1 194 0 1 1713 305 247 163 10 chr5 147949725 147949823 -4587436 - MIRc SINE MIR -124 144 32 1 1713 1160 299 99 8 chr5 147950412 147950766 -4586493 + MLT1B-int LTR MaLR 982 1367 -4 1 1713 336 48 0 0 chr5 147950788 147950830 -4586429 + (CCCCCA)n Simple_repeat Simple_repeat 1 42 0 1 1713 259 188 0 59 chr5 147950831 147950899 -4586360 + MLT1B LTR MaLR 36 99 -291 1 1713 840 148 0 47 chr5 147950912 147951061 -4586198 + B1_Mur1 SINE Alu 2 143 -6 1 1713 1889 164 57 75 chr5 147951515 147951916 -4585343 + ORR1B1 LTR MaLR 1 394 0 1 1713 275 65 22 0 chr5 147951937 147951983 -4585276 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 1 1713 745 115 32 24 chr5 147951996 147952121 -4585138 - B1_Mus2 SINE Alu -17 130 5 1 1713 536 223 0 0 chr5 147952344 147952447 -4584812 - Tigger7 DNA MER2_type -2365 126 24 1 1713 941 246 44 0 chr5 147952506 147952709 -4584550 + B3 SINE B2 1 212 -4 1 1713 215 170 21 0 chr5 147952803 147952850 -4584409 + GA-rich Low_complexity Low_complexity 2 49 0 1 1713 363 258 93 0 chr5 147952853 147952950 -4584309 + PB1D10 SINE Alu 1 106 -11 1 1713 333 68 0 0 chr5 147952950 147952994 -4584265 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1 1713 860 214 39 19 chr5 147953007 147953212 -4584047 + B3 SINE B2 5 213 -3 1 1713 561 255 54 0 chr5 147953237 147953386 -4583873 + MLT1B LTR MaLR 164 320 -70 1 1713 3406 256 19 76 chr5 147953386 147954291 -4582968 + Lx5 LINE L1 6187 7039 -11 1 1713 545 105 0 11 chr5 147954338 147954425 -4582834 + (TA)n Simple_repeat Simple_repeat 2 87 0 1 1713 417 221 70 0 chr5 147954426 147954512 -4582747 - B1_Mur2 SINE Alu -57 92 1 1 1713 861 265 52 79 chr5 147954539 147954830 -4582429 + B4A SINE B4 10 292 0 1 1713 395 279 36 65 chr5 147954870 147955146 -4582113 + L1_Rod LINE L1 3196 3463 -2384 1 1713 650 222 0 16 chr5 147955171 147955299 -4581960 + B1_Mus1 SINE Alu 2 127 -21 1 1713 1505 189 43 0 chr5 147955461 147955742 -4581517 - RLTR19C LTR ERVK -213 293 1 1 1713 482 116 33 55 chr5 147955742 147955833 -4581426 - RLTR19-int LTR ERVK 0 6137 6049 1 1713 6892 182 58 73 chr5 147955857 147957513 -4579746 - RLTR19-int LTR ERVK -51 6086 4456 1 1713 5532 154 82 88 chr5 147957524 147957820 -4579439 - RLTR19-int LTR ERVK -4672 1465 1205 1 1713 1517 47 16 5 chr5 147957820 147958011 -4579248 - B2_Mm2 SINE B2 -1 194 2 1 1713 5532 154 82 88 chr5 147958011 147958276 -4578983 - RLTR19-int LTR ERVK -4933 1204 965 1 1713 1221 42 0 0 chr5 147958276 147958419 -4578840 - B1_Mus2 SINE Alu 0 147 5 1 1713 5532 154 82 88 chr5 147958419 147958586 -4578673 - RLTR19-int LTR ERVK -5173 964 797 1 1713 243 0 0 0 chr5 147958586 147958613 -4578646 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 1 1713 5532 154 82 88 chr5 147958613 147959182 -4578077 - RLTR19-int LTR ERVK -5341 796 174 1 1713 1679 308 50 111 chr5 147959493 147959762 -4577497 + L1_Mur3 LINE L1 1256 1515 -4365 1 1713 585 64 0 0 chr5 147959762 147959840 -4577419 + (GGAAA)n Simple_repeat Simple_repeat 3 80 0 1 1713 1679 308 50 111 chr5 147959840 147960685 -4576574 + L1_Mur3 LINE L1 1516 2274 -3606 1 1713 1144 56 14 0 chr5 147960685 147960829 -4576430 + B1_Mur4 SINE Alu 5 150 0 1 1713 1679 308 50 111 chr5 147960829 147961687 -4575572 + L1_Mur3 LINE L1 2275 3108 -2772 1 1713 1492 77 0 5 chr5 147961691 147961886 -4575373 + B2_Mm2 SINE B2 2 195 0 1 1713 405 188 0 0 chr5 147961898 147961962 -4575297 + B1_Mur4 SINE Alu 1 64 -86 1 1713 22 0 0 0 chr5 147961985 147962007 -4575252 + AT_rich Low_complexity Low_complexity 1 22 0 1 1713 1049 117 7 0 chr5 147962062 147962207 -4575052 - B1_Mur4 SINE Alu 0 150 5 1 1713 1100 234 9 60 chr5 147962211 147962529 -4574730 + L1M2 LINE L1 3622 3923 -2220 1 1713 2433 145 112 34 chr5 147962561 147963062 -4574197 + Lx4B LINE L1 6515 7054 -4 1 1713 207 179 0 25 chr5 147963071 147963111 -4574148 + G-rich Low_complexity Low_complexity 3 41 0 1 1713 316 224 240 31 chr5 147963120 147963249 -4574010 + Lx8 LINE L1 6892 7047 -426 1 1713 431 195 62 39 chr5 147963250 147963378 -4573881 + RLTR12B LTR ERVK 181 311 -217 1 1713 805 239 56 80 chr5 147963424 147963711 -4573548 + RLTR12B LTR ERVK 240 519 -9 1 1713 291 306 0 48 chr5 147963868 147963971 -4573288 - MER20 DNA MER1_type -8 211 114 1 1713 471 305 58 35 chr5 147964240 147964413 -4572846 - MLT1A0 LTR MaLR -165 200 24 1 1713 820 168 68 20 chr5 147964787 147964965 -4572294 - ORR1D2 LTR MaLR -13 366 192 1 1713 870 224 25 53 chr5 147964965 147965210 -4572049 - RMER1B Other Other -2 1064 827 1 1713 641 199 63 42 chr5 147965244 147965272 -4571987 - ORR1D2 LTR MaLR -225 145 122 1 1713 2648 123 5 17 chr5 147965272 147965684 -4571575 - MTB_Mm LTR MaLR 0 407 1 1 1713 641 199 63 42 chr5 147965684 147965797 -4571462 - ORR1D2 LTR MaLR -249 121 1 1 1713 245 328 103 32 chr5 147965937 147966063 -4571196 + RSINE1 SINE B4 23 157 -8 1 1713 279 0 0 0 chr5 147966064 147966095 -4571164 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1713 765 221 126 11 chr5 147966095 147966278 -4570981 - B3 SINE B2 -12 204 1 1 1713 363 244 0 12 chr5 147968569 147968652 -4568607 - ID2 SINE ID 0 83 2 1 1713 892 261 118 60 chr5 147968787 147969134 -4568125 + ORR1D2 LTR MaLR 3 369 -1 1 1713 617 267 70 44 chr5 147969402 147969629 -4567630 - RMER5 LTR ERV1 -8 526 294 1 1713 270 0 0 0 chr5 147969642 147969672 -4567587 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1 1713 778 212 0 7 chr5 147969677 147969824 -4567435 - B1_Mus2 SINE Alu -1 146 1 1 1713 1241 222 19 15 chr5 147969824 147970080 -4567179 - RMER5 LTR ERV1 -277 257 1 1 1713 1268 264 75 52 chr5 147970080 147970391 -4566868 - RMER5 LTR ERV1 -24 510 187 1 1713 2884 124 5 2 chr5 147970391 147970810 -4566449 - MTC LTR MaLR 0 421 2 1 1713 1268 264 75 52 chr5 147970810 147970937 -4566322 - RMER5 LTR ERV1 -348 186 62 1 1713 555 201 0 17 chr5 147971426 147971719 -4565540 + (TG)n Simple_repeat Simple_repeat 1 287 0 1 1713 865 198 96 5 chr5 147971782 147971980 -4565279 + B3 SINE B2 1 216 0 1 1713 418 250 19 0 chr5 147972177 147972281 -4564978 - ID_B1 SINE B4 0 224 119 1 1713 233 200 117 0 chr5 147972229 147972289 -4564970 - 4.5SRNA scRNA scRNA -6 88 22 1 1713 385 215 53 61 chr5 147972396 147972510 -4564749 + RSINE1 SINE B4 13 125 -40 1 1713 294 95 0 0 chr5 147972545 147972587 -4564672 + (CA)n Simple_repeat Simple_repeat 1 42 0 1 1713 430 211 84 0 chr5 147972602 147972697 -4564562 + B1_Mur1 SINE Alu 6 108 -41 1 1713 246 278 92 42 chr5 147972697 147972714 -4564545 + ID_B1 SINE B4 112 203 -21 1 1713 884 204 60 16 chr5 147973056 147973240 -4564019 - B3 SINE B2 0 216 25 1 1713 408 290 6 51 chr5 147973334 147973512 -4563747 + GA-rich Low_complexity Low_complexity 2 171 0 1 1713 590 80 146 29 chr5 147973545 147973640 -4563619 + B1_Mur4 SINE Alu 36 145 -5 1 1713 351 0 0 0 chr5 147973640 147973679 -4563580 + (CCAA)n Simple_repeat Simple_repeat 1 39 0 1 1713 817 119 47 40 chr5 147973807 147973956 -4563303 + B1_Mur4 SINE Alu 1 150 0 1 1713 204 143 40 20 chr5 147973957 147974007 -4563252 + A-rich Low_complexity Low_complexity 3 53 0 1 1713 213 175 31 31 chr5 147974047 147974112 -4563147 + T-rich Low_complexity Low_complexity 6 70 0 1 1713 799 128 0 14 chr5 147974135 147974278 -4562981 + (TTCC)n Simple_repeat Simple_repeat 3 143 0 1 1713 390 118 48 10 chr5 147974651 147974754 -4562505 + (CA)n Simple_repeat Simple_repeat 1 107 0 1 1713 607 306 30 21 chr5 147974828 147974842 -4562417 - RMER15 LTR ERVL -34 541 528 1 1713 228 67 0 0 chr5 147974842 147974872 -4562387 + (TATG)n Simple_repeat Simple_repeat 2 31 0 1 1713 607 306 30 21 chr5 147974872 147975091 -4562168 - RMER15 LTR ERVL -48 527 306 1 1713 1336 83 11 6 chr5 147975623 147975804 -4561455 + B2_Mm2 SINE B2 2 183 -12 1 1713 1039 334 62 70 chr5 147976051 147976319 -4560940 - MER44B DNA MER2_type -5 545 290 1 1713 1466 50 16 6 chr5 147976319 147976501 -4560758 + B2_Mm2 SINE B2 2 185 -10 1 1713 1039 334 62 70 chr5 147976501 147976779 -4560480 - MER44B DNA MER2_type -261 289 3 1 1713 660 160 0 28 chr5 147977667 147977776 -4559483 - B1_Mus2 SINE Alu 0 147 42 1 1713 246 219 69 59 chr5 147977718 147977820 -4559439 - RLTR25B LTR ERVK -529 499 397 1 1713 374 0 0 162 chr5 147977821 147978019 -4559240 + (CTCTG)n Simple_repeat Simple_repeat 5 170 0 1 1713 271 220 0 33 chr5 147978020 147978081 -4559178 - PB1D9 SINE Alu -61 59 1 1 1713 277 312 123 9 chr5 147978083 147978220 -4559039 - MIRc SINE MIR -98 164 21 1 1713 356 0 0 22 chr5 147978362 147978407 -4558852 + (CA)n Simple_repeat Simple_repeat 1 44 0 1 1713 3572 20 2 0 chr5 147979064 147979459 -4557800 - MTA_Mm LTR MaLR 0 396 1 1 214 225 217 142 120 chr5 147980184 147980367 -4556892 + ORR1C2 LTR MaLR 5 191 -193 1 1714 325 191 0 16 chr5 147980493 147980557 -4556702 + MLT1A1 LTR MaLR 344 406 -2 1 1714 355 186 0 54 chr5 147980828 147980902 -4556357 + RMER30 DNA MER1_type 132 201 -1 1 1714 909 201 0 0 chr5 147981335 147981631 -4555628 + (CA)n Simple_repeat Simple_repeat 1 296 0 1 1714 429 285 54 0 chr5 147982233 147982363 -4554896 + B1F SINE Alu 1 137 -12 1 1714 742 236 23 32 chr5 147982378 147982576 -4554683 + B3A SINE B2 1 188 -5 1 1714 867 170 0 75 chr5 147982617 147982776 -4554483 + B1_Mur4 SINE Alu 3 149 -1 1 1714 484 287 101 0 chr5 147982824 147982953 -4554306 + B1_Mur2 SINE Alu 5 146 -3 1 1714 21 0 0 0 chr5 147983032 147983053 -4554206 + GC_rich Low_complexity Low_complexity 1 21 0 1 1714 238 294 14 14 chr5 147983139 147983208 -4554051 - ORR1E LTR MaLR 0 379 311 1 1714 301 350 52 58 chr5 147983231 147983404 -4553855 - ORR1E LTR MaLR -173 186 15 1 1714 514 307 101 52 chr5 147983494 147983762 -4553497 + B4A SINE B4 12 292 0 1 1714 718 273 56 8 chr5 147983921 147984128 -4553131 + B4 SINE B4 2 224 0 1 1714 284 140 120 0 chr5 147984154 147984204 -4553055 + B1_Mus1 SINE Alu 1 56 -92 1 1714 253 271 144 14 chr5 147984228 147984374 -4552885 - RLTR12B LTR ERVK -34 494 330 1 1714 227 293 52 0 chr5 147984379 147984437 -4552822 + ID4 SINE ID 23 83 0 1 1714 355 261 20 0 chr5 147984723 147984825 -4552434 + ID4_ SINE ID 4 110 -42 1 1714 1476 28 61 6 chr5 147984839 147984855 -4552404 - B2_Mm1a SINE B2 -2 191 176 1 1714 387 0 0 0 chr5 147984855 147984898 -4552361 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1 1714 1476 28 61 6 chr5 147984898 147985062 -4552197 - B2_Mm1a SINE B2 -18 175 2 1 1714 2503 186 88 16 chr5 147985233 147985745 -4551514 + RMER15 LTR ERVL 27 575 0 1 1714 363 369 112 11 chr5 147985745 147985911 -4551348 - MLT1H LTR MaLR -259 290 107 1 1714 4676 164 22 118 chr5 147986143 147987198 -4550061 + RMER1B Other Other 113 1066 0 1 1714 704 105 26 26 chr5 147987353 147987470 -4549789 + B1_Mur3 SINE Alu 32 148 -1 1 1714 329 234 135 68 chr5 147987570 147987703 -4549556 - RLTR42-int LTR ERVK -4159 1363 1222 1 1714 817 143 0 79 chr5 147987938 147988090 -4549169 - B1_Mus1 SINE Alu -8 140 1 1 1714 803 121 73 0 chr5 147988396 147988520 -4548739 + B1_Mus2 SINE Alu 2 134 -13 1 1714 330 338 13 33 chr5 147988539 147988689 -4548570 - B1F SINE Alu -1 148 2 1 1714 596 208 0 9 chr5 147988750 147988857 -4548402 + PB1D9 SINE Alu 2 107 -13 1 1714 330 87 0 0 chr5 147988857 147988903 -4548356 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 1 1714 26 50 0 0 chr5 147988941 147988981 -4548278 + AT_rich Low_complexity Low_complexity 1 40 0 1 1714 338 243 0 54 chr5 147989014 147989088 -4548171 + ID4 SINE ID 4 73 -10 1 1714 1216 35 7 0 chr5 147990378 147990522 -4546737 - B1_Mus1 SINE Alu -3 145 1 1 1714 432 82 0 0 chr5 147990540 147990601 -4546658 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1714 2964 68 47 0 chr5 147990654 147991035 -4546224 - MTB LTR MaLR 0 400 2 1 1714 267 54 0 0 chr5 147991313 147991350 -4545909 + (TTG)n Simple_repeat Simple_repeat 3 39 0 1 1714 888 91 30 22 chr5 147991350 147991485 -4545774 - B1_Mm SINE Alu 0 147 12 1 1714 1526 53 16 0 chr5 147991781 147991969 -4545290 - B2_Mm1a SINE B2 -1 192 2 1 1714 387 0 0 0 chr5 147992218 147992261 -4544998 + (GA)n Simple_repeat Simple_repeat 1 43 0 1 1714 832 81 47 7 chr5 147992311 147992461 -4544798 - RMER17B LTR ERVK -491 467 312 1 1714 293 244 25 13 chr5 147992674 147992753 -4544506 + ID4_ SINE ID 4 83 0 1 1714 369 238 75 75 chr5 147993095 147993254 -4544005 - MER53 DNA hAT -15 178 20 1 1714 1809 176 55 42 chr5 147993301 147993495 -4543764 - ORR1D1 LTR MaLR 0 374 171 1 1714 543 56 0 0 chr5 147993495 147993566 -4543693 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 1 1714 1809 176 55 42 chr5 147993566 147993732 -4543527 - ORR1D1 LTR MaLR -204 170 9 1 1714 1938 110 93 3 chr5 147994418 147994720 -4542539 + ORR1A4 LTR MaLR 1 329 0 1 1714 382 148 0 0 chr5 147994671 147994732 -4542527 - ORR1A2 LTR MaLR 0 394 334 1 1714 1314 141 15 0 chr5 147994731 147994930 -4542329 - ORR1A2 LTR MaLR -125 202 1 1 1714 525 116 0 65 chr5 147994930 147994997 -4542262 + ORR1A4 LTR MaLR 269 329 0 1 1714 876 182 77 0 chr5 147994997 147995167 -4542092 + B3 SINE B2 2 184 -32 1 1714 779 224 211 39 chr5 147995168 147995424 -4541835 - RMER4B LTR ERVK -4 581 282 1 1714 925 150 116 16 chr5 147995466 147995656 -4541603 - RMER4B LTR ERVK -376 209 1 1 1714 639 241 7 41 chr5 147995717 147995864 -4541395 + B1_Mur3 SINE Alu 1 142 -7 1 1714 1203 55 7 0 chr5 147995878 147996024 -4541235 + B1_Mus2 SINE Alu 1 147 0 1 1714 440 178 0 19 chr5 147996043 147996146 -4541113 + GA-rich Low_complexity Low_complexity 3 103 0 1 1714 621 232 8 0 chr5 147996159 147996302 -4540957 + B1_Mur3 SINE Alu 1 144 -6 1 1714 203 88 0 29 chr5 147996304 147996339 -4540920 + (GGA)n Simple_repeat Simple_repeat 3 36 0 1 1714 453 19 0 0 chr5 147996625 147996679 -4540580 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 1 1714 205 203 0 59 chr5 147997489 147997557 -4539702 + G-rich Low_complexity Low_complexity 2 65 0 1 1714 21 0 0 0 chr5 148000668 148000689 -4536570 + GC_rich Low_complexity Low_complexity 1 21 0 1 1714 495 48 0 0 chr5 148001267 148001329 -4535930 + (TC)n Simple_repeat Simple_repeat 1 62 0 2 1714 23 0 0 0 chr5 148001586 148001609 -4535650 + GC_rich Low_complexity Low_complexity 1 23 0 3 1714 28 61 0 0 chr5 148002466 148002515 -4534744 + AT_rich Low_complexity Low_complexity 1 49 0 4 1714 525 71 0 0 chr5 148005127 148005197 -4532062 + (TC)n Simple_repeat Simple_repeat 1 70 0 5 1714 460 125 21 0 chr5 148005198 148005294 -4531965 + (TA)n Simple_repeat Simple_repeat 2 99 0 6 1714 209 191 24 0 chr5 148005851 148005893 -4531366 + C-rich Low_complexity Low_complexity 3 45 0 7 1714 233 367 25 0 chr5 148006018 148006097 -4531162 + ID4_ SINE ID 2 82 -1 8 1714 183 235 0 0 chr5 148006171 148006222 -4531037 + (TG)n Simple_repeat Simple_repeat 2 52 0 9 1714 597 221 43 0 chr5 148006277 148006417 -4530842 - B1_Mus2 SINE Alu 0 147 2 1 1714 23 33 0 0 chr5 148006430 148006460 -4530799 + AT_rich Low_complexity Low_complexity 1 30 0 1 1714 1161 113 0 0 chr5 148006479 148006638 -4530621 + B2_Mm2 SINE B2 2 160 -35 1 1714 369 0 0 0 chr5 148006641 148006682 -4530577 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1 1714 1089 137 20 63 chr5 148006872 148007105 -4530154 - B2_Mm2 SINE B2 0 216 2 1 1714 585 296 52 28 chr5 148007139 148007351 -4529908 + ID_B1 SINE B4 1 217 -7 1 1714 340 259 8 59 chr5 148008268 148008387 -4528872 + PB1D10 SINE Alu 5 117 0 1 1714 458 250 80 45 chr5 148008373 148008549 -4528710 + MLT1B LTR MaLR 197 378 -12 1 1714 218 75 50 0 chr5 148008599 148008639 -4528620 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 1 1714 427 137 162 29 chr5 148008710 148008815 -4528444 + PB1D9 SINE Alu 2 120 0 1 1714 3038 212 190 13 chr5 148009200 148010035 -4527224 - RMER1A Other Other -4 1026 44 2 1714 2145 129 108 39 chr5 148010184 148010646 -4526613 + RLTR31A_Mm LTR ERVK 5 561 0 2 1714 1257 173 151 30 chr5 148010716 148011020 -4526239 - RMER1B Other Other -680 386 46 2 1714 1309 67 0 6 chr5 148011070 148011236 -4526023 + B2_Mm2 SINE B2 1 165 -30 2 1714 452 85 0 10 chr5 148011268 148011382 -4525877 + B2_Mm2 SINE B2 47 195 0 2 1714 236 254 14 43 chr5 148011892 148011904 -4525355 + MLT1B LTR MaLR 482 491 -71 1 1714 791 166 65 0 chr5 148011904 148012043 -4525216 - B1_Mur4 SINE Alu -2 148 1 2 1714 236 254 14 43 chr5 148012043 148012100 -4525159 + MLT1B LTR MaLR 492 549 -13 1 1714 404 215 53 21 chr5 148012584 148012679 -4524580 - PB1D10 SINE Alu -2 115 18 2 1714 1097 197 25 0 chr5 148012820 148013018 -4524241 - B3 SINE B2 -10 206 4 2 1714 273 31 0 0 chr5 148013289 148013321 -4523938 + L1Md_F3 LINE L1 5555 5586 -297 2 1714 8574 22 2 6 chr5 148013321 148014312 -4522947 + L1Md_F3 LINE L1 5587 6573 -11 2 1714 28 0 0 0 chr5 148014497 148014525 -4522734 + AT_rich Low_complexity Low_complexity 1 28 0 2 1714 258 200 49 16 chr5 148014700 148014761 -4522498 + PB1D10 SINE Alu 55 117 0 3 1714 1115 80 0 0 chr5 148014763 148014901 -4522358 + B1_Mus2 SINE Alu 1 138 -9 3 1714 461 148 24 47 chr5 148015050 148015135 -4522124 - PB1D9 SINE Alu 0 120 38 3 1714 278 152 11 160 chr5 148015077 148015171 -4522088 - RLTR25B LTR ERVK -533 495 416 3 1714 1211 100 33 22 chr5 148015224 148015408 -4521851 + B2_Mm1t SINE B2 2 187 -6 3 1714 860 42 217 0 chr5 148015502 148015622 -4521637 - B1_Mm SINE Alu -1 146 1 3 1714 382 243 46 18 chr5 148015633 148015742 -4521517 - PB1D9 SINE Alu -8 112 1 3 1714 486 222 0 0 chr5 148015839 148015920 -4521339 - ID4 SINE ID -2 81 1 3 1714 710 174 57 21 chr5 148015929 148016070 -4521189 + B1_Mur3 SINE Alu 2 147 -2 3 1714 333 47 0 0 chr5 148016071 148016114 -4521145 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 1714 929 110 14 20 chr5 148017385 148017522 -4519737 + B1_Mur4 SINE Alu 1 138 -12 4 1714 199 29 86 0 chr5 148017522 148017557 -4519702 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 4 1714 251 213 21 0 chr5 148017574 148017621 -4519638 - ORR1E LTR MaLR -40 319 272 4 1714 223 182 0 0 chr5 148017903 148017947 -4519312 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 4 1714 682 245 26 7 chr5 148017948 148018100 -4519159 - ID_B1 SINE B4 -1 223 69 4 1714 651 126 167 38 chr5 148018121 148018253 -4519006 - B1_Mur4 SINE Alu 0 150 2 4 1714 727 232 214 6 chr5 148018307 148018485 -4518774 - ID_B1 SINE B4 -9 215 1 4 1714 247 263 104 9 chr5 148018697 148018812 -4518447 - Lx9 LINE L1 -1738 5906 5781 4 1714 212 0 91 23 chr5 148018883 148018927 -4518332 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 4 1714 368 308 43 62 chr5 148018940 148019148 -4518111 - L1M2 LINE L1 -500 5797 5594 4 1714 210 37 0 0 chr5 148019151 148019178 -4518081 + (TTG)n Simple_repeat Simple_repeat 2 28 0 5 1714 669 239 169 16 chr5 148019178 148019361 -4517898 - B3 SINE B2 -5 211 1 5 1714 360 263 0 0 chr5 148019370 148019549 -4517710 + (TG)n Simple_repeat Simple_repeat 2 180 0 5 1714 567 235 0 0 chr5 148019564 148019860 -4517399 + (TG)n Simple_repeat Simple_repeat 1 296 0 5 1714 242 229 144 21 chr5 148019925 148020137 -4517122 - L1M2 LINE L1 -680 5444 5194 5 1714 1100 188 19 14 chr5 148020162 148020373 -4516886 - B3 SINE B2 -4 212 1 5 1714 455 173 168 64 chr5 148020740 148020862 -4516397 + B1_Mur2 SINE Alu 13 149 0 5 1714 465 294 39 47 chr5 148021084 148021448 -4515811 - Lx8 LINE L1 0 7473 7113 5 1714 251 280 103 65 chr5 148021456 148021563 -4515696 + MLT1B LTR MaLR 156 266 -124 5 1714 2478 173 29 11 chr5 148022031 148022509 -4514750 + Lx5 LINE L1 6551 7037 -13 5 1714 652 227 254 6 chr5 148022537 148022710 -4514549 + B3 SINE B2 1 216 0 5 1714 288 0 0 0 chr5 148022711 148022743 -4514516 + (CA)n Simple_repeat Simple_repeat 1 32 0 6 1714 303 28 0 0 chr5 148022743 148022779 -4514480 + (GA)n Simple_repeat Simple_repeat 1 36 0 6 1714 979 189 37 0 chr5 148022780 148022970 -4514289 + B3 SINE B2 9 205 -11 6 1714 2249 114 12 3 chr5 148023252 148023587 -4513672 - ORR1A1 LTR MaLR -8 338 1 6 1714 424 309 28 151 chr5 148023803 148024120 -4513139 - B4A SINE B4 -12 280 3 6 1714 797 137 34 0 chr5 148024418 148024535 -4512724 + B1_Mur2 SINE Alu 13 133 -16 6 1714 287 150 17 0 chr5 148024537 148024597 -4512662 + GA-rich Low_complexity Low_complexity 3 63 0 6 1714 687 265 10 39 chr5 148024643 148024847 -4512412 + B3A SINE B2 1 198 0 6 1714 217 221 155 42 chr5 148024859 148024930 -4512329 - AluG_3 SINE Alu -96 215 137 6 1714 232 295 163 26 chr5 148024971 148025124 -4512135 - L2 LINE L2 -566 2853 2680 6 1714 280 250 102 62 chr5 148025355 148025483 -4511776 - RMER15 LTR ERVL 0 575 443 7 1714 350 333 43 37 chr5 148025501 148025688 -4511571 - RMER15 LTR ERVL -101 474 287 7 1714 810 131 62 0 chr5 148025822 148025967 -4511292 + URR1A DNA MER1_type 73 226 0 7 1714 389 242 79 43 chr5 148025967 148025984 -4511275 - CYRA11_Mm Unknown Y-chromosome -293 322 155 7 1714 994 108 18 6 chr5 148026599 148026766 -4510493 + (GGGAGA)n Simple_repeat Simple_repeat 6 174 0 7 1714 405 351 12 28 chr5 148027783 148028038 -4509221 - L1_Mur3 LINE L1 -6565 1147 897 7 1714 284 211 83 14 chr5 148028181 148028253 -4509006 + B3 SINE B2 1 77 -139 7 1714 1275 89 61 6 chr5 148028751 148028913 -4508346 + B2_Mm2 SINE B2 2 173 -22 7 1714 423 0 0 0 chr5 148028913 148028960 -4508299 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 7 1714 1275 89 61 6 chr5 148028960 148028978 -4508281 + B2_Mm2 SINE B2 174 191 -4 7 1714 297 0 0 0 chr5 148029227 148029260 -4507999 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 7 1714 1268 110 16 5 chr5 148029289 148029481 -4507778 + B2_Mm2 SINE B2 2 195 0 7 1714 724 263 41 0 chr5 148029498 148029669 -4507590 - B3A SINE B2 -19 179 2 8 1714 925 236 19 37 chr5 148029681 148029897 -4507362 - B3 SINE B2 -4 212 1 8 1714 411 290 20 10 chr5 148029941 148030042 -4507217 - PB1D10 SINE Alu -5 112 11 8 1714 240 380 9 18 chr5 148030125 148030235 -4507024 - MER65D LTR ERV1 -347 126 18 8 1714 2323 177 39 65 chr5 148030550 148031093 -4506166 - RLTR24 LTR ERV1 0 529 1 8 1714 2121 144 8 36 chr5 148031138 148031206 -4506053 - MTB_Mm LTR MaLR 0 407 341 8 1714 2805 181 59 11 chr5 148031206 148031497 -4505762 - RLTR12A LTR ERVK 0 568 255 8 1714 423 0 0 0 chr5 148031497 148031544 -4505715 + (TC)n Simple_repeat Simple_repeat 1 47 0 8 1714 2805 181 59 11 chr5 148031544 148031794 -4505465 - RLTR12A LTR ERVK -314 254 2 8 1714 2121 144 8 36 chr5 148031794 148032085 -4505174 - MTB_Mm LTR MaLR -67 340 58 8 1714 593 170 9 28 chr5 148032237 148032346 -4504913 + PB1D9 SINE Alu 1 107 -13 8 1714 548 29 0 14 chr5 148032348 148032419 -4504840 + (GAAA)n Simple_repeat Simple_repeat 3 72 0 8 1714 25 0 0 0 chr5 148033455 148033480 -4503779 + GC_rich Low_complexity Low_complexity 1 25 0 9 1714 29 0 0 0 chr5 148035750 148035779 -4501480 + AT_rich Low_complexity Low_complexity 1 29 0 9 1714 216 0 0 0 chr5 148035817 148035841 -4501418 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1714 432 0 0 0 chr5 148036465 148036513 -4500746 + (TG)n Simple_repeat Simple_repeat 1 48 0 9 1714 189 0 0 0 chr5 148039251 148039272 -4497987 + (CA)n Simple_repeat Simple_repeat 1 21 0 9 1714 213 39 0 0 chr5 148039854 148039880 -4497379 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1714 595 243 99 14 chr5 148039882 148040024 -4497235 - B3 SINE B2 -61 155 2 9 1714 276 301 107 0 chr5 148040041 148040144 -4497115 + B1F SINE Alu 36 149 0 9 1714 239 262 0 101 chr5 148040367 148040456 -4496803 - ID4_ SINE ID -1 82 3 9 1714 186 243 176 54 chr5 148040456 148040530 -4496729 + L2b LINE L2 3099 3181 -206 9 1714 207 370 64 18 chr5 148040559 148040669 -4496590 + L2b LINE L2 3253 3367 -8 9 1714 1077 53 0 0 chr5 148040879 148041010 -4496249 + B2_Mm2 SINE B2 2 132 -63 1 1714 861 188 0 13 chr5 148041130 148041281 -4495978 + B1_Mur3 SINE Alu 1 149 0 1 1714 327 25 0 0 chr5 148041383 148041423 -4495836 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1714 816 61 0 0 chr5 148041423 148041537 -4495722 + (GA)n Simple_repeat Simple_repeat 1 115 0 1 1714 291 253 0 144 chr5 148041554 148041665 -4495594 - B4A SINE B4 -113 179 85 1 1714 499 209 9 28 chr5 148041627 148041735 -4495524 - PB1D9 SINE Alu -12 108 3 1 1714 389 314 28 28 chr5 148041735 148041798 -4495461 - B4A SINE B4 -204 88 26 1 1714 21 36 0 0 chr5 148041844 148041872 -4495387 + AT_rich Low_complexity Low_complexity 1 28 0 1 1714 307 277 64 0 chr5 148042444 148042538 -4494721 - PB1D10 SINE Alu -17 100 1 1 1714 1170 119 6 22 chr5 148042566 148042747 -4494512 + B2_Mm2 SINE B2 2 179 -16 1 1714 246 143 48 0 chr5 148043052 148043115 -4494144 + GA-rich Low_complexity Low_complexity 2 67 0 1 1714 759 249 73 19 chr5 148043164 148043369 -4493890 + B3 SINE B2 1 216 0 1 1714 239 200 0 0 chr5 148043407 148043452 -4493807 - B1F SINE Alu -8 141 97 1 1714 237 65 0 0 chr5 148043456 148043487 -4493772 + (T)n Simple_repeat Simple_repeat 1 31 0 1 1714 1231 48 0 0 chr5 148043487 148043633 -4493626 - B1_Mus2 SINE Alu 0 147 2 1 1714 198 282 34 120 chr5 148043791 148043908 -4493351 + L2c LINE L2 3258 3364 -23 1 1714 1554 257 230 62 chr5 148043987 148044799 -4492460 + Lx8 LINE L1 6525 7473 0 1 1714 34 24 0 0 chr5 148044799 148044840 -4492419 + AT_rich Low_complexity Low_complexity 1 41 0 1 1714 229 324 47 9 chr5 148044911 148044933 -4492326 - ID_B1 SINE B4 -33 191 82 1 1714 232 369 0 0 chr5 148044933 148045017 -4492242 - PB1D10 SINE Alu -33 84 1 1 1714 627 216 6 75 chr5 148045050 148045210 -4492049 - B1_Mur1 SINE Alu 0 149 1 1 1714 1073 203 19 19 chr5 148046365 148046581 -4490678 + B3 SINE B2 1 216 0 1 1714 24 0 0 0 chr5 148046584 148046608 -4490651 + AT_rich Low_complexity Low_complexity 1 24 0 1 1714 842 175 156 25 chr5 148047838 148048037 -4489222 - URR1B DNA MER1_type 0 225 1 1 1714 381 172 21 11 chr5 148048243 148048337 -4488922 + CT-rich Low_complexity Low_complexity 2 96 0 1 1714 994 150 14 0 chr5 148048348 148048495 -4488764 - B1_Mur4 SINE Alu -1 149 1 1 1714 363 223 58 10 chr5 148048505 148048609 -4488650 - MER5A DNA MER1_type -80 109 1 1 1714 1080 264 115 81 chr5 148049609 148050177 -4487082 + MT2A LTR ERVL 4 517 -16 1 1714 1081 134 108 0 chr5 148050177 148050363 -4486896 + URR1A DNA MER1_type 1 206 -20 1 1714 568 323 113 33 chr5 148050364 148050850 -4486409 - L1ME3A LINE L1 -91 6082 5558 1 1714 302 331 43 35 chr5 148050901 148051042 -4486217 - L1ME3A LINE L1 -694 5468 5327 1 1714 600 14 0 0 chr5 148051056 148051125 -4486134 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 1 1714 555 118 0 0 chr5 148051125 148051210 -4486049 + (TC)n Simple_repeat Simple_repeat 1 85 0 1 1714 310 233 115 11 chr5 148052073 148052160 -4485099 - PB1D7 SINE Alu -10 110 15 1 1714 267 298 36 44 chr5 148052283 148052420 -4484839 + RMER12 LTR ERVK 720 855 -467 1 1714 186 43 0 0 chr5 148052420 148052443 -4484816 + (CATATA)n Simple_repeat Simple_repeat 4 26 0 1 1714 315 132 8 1 chr5 148052782 148052832 -4484427 + B1_Mus2 SINE Alu 79 137 -13 1 1714 264 59 0 0 chr5 148052832 148052866 -4484393 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1 1714 309 148 97 16 chr5 148052866 148052877 -4484382 + B1_Mur4 SINE Alu 138 148 -2 1 1714 24 0 0 0 chr5 148052898 148052922 -4484337 + AT_rich Low_complexity Low_complexity 1 24 0 1 1714 638 248 7 7 chr5 148052936 148053074 -4484185 - B1_Mur2 SINE Alu -11 138 1 1 1714 32 65 0 13 chr5 148053074 148053106 -4484153 + AT_rich Low_complexity Low_complexity 1 32 0 1 1714 1211 94 193 0 chr5 148053106 148053287 -4483972 - B3 SINE B2 0 216 1 1 1714 32 65 0 13 chr5 148053287 148053332 -4483927 + AT_rich Low_complexity Low_complexity 1 45 0 1 1714 1309 112 17 0 chr5 148053560 148053738 -4483521 + B2_Mm2 SINE B2 1 181 -14 1 1714 411 39 0 0 chr5 148053812 148053864 -4483395 + B2_Mm1a SINE B2 127 178 -15 1 1714 894 116 0 0 chr5 148053864 148054002 -4483257 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 1 1714 485 42 0 27 chr5 148054934 148055007 -4482252 + (TCTCTG)n Simple_repeat Simple_repeat 2 72 0 1 1714 1142 196 35 0 chr5 148055323 148055522 -4481737 - B3 SINE B2 -9 207 2 1 1714 244 324 27 13 chr5 148055558 148055633 -4481626 + MIRc SINE MIR 77 152 -116 1 1714 329 281 21 53 chr5 148055940 148056034 -4481225 + PB1D10 SINE Alu 7 97 -50 1 1714 268 301 14 0 chr5 148056190 148056263 -4480996 + PB1D10 SINE Alu 1 74 -43 1 1714 253 358 66 22 chr5 148056263 148056327 -4480932 + ID_B1 SINE B4 82 224 0 1 1714 548 219 8 34 chr5 148057259 148057366 -4479893 + PB1D9 SINE Alu 1 107 -13 1 1714 200 31 62 0 chr5 148057366 148057398 -4479861 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1 1714 797 194 200 0 chr5 148057517 148057697 -4479562 + B3 SINE B2 1 216 0 1 1714 1074 78 0 0 chr5 148058200 148058341 -4478918 + B1_Mus1 SINE Alu 7 147 -1 1 1714 529 260 36 72 chr5 148058203 148058369 -4478890 + B4 SINE B4 94 253 -39 1 1714 249 243 0 0 chr5 148058428 148058498 -4478761 + CT-rich Low_complexity Low_complexity 3 72 0 1 1714 406 267 95 0 chr5 148058540 148058645 -4478614 - PB1D10 SINE Alu 0 117 3 1 1714 5080 78 33 13 chr5 148059052 148059757 -4477502 + L1_Mus4 LINE L1 5918 6636 0 1 1714 189 0 0 0 chr5 148059771 148059792 -4477467 + (CAAGA)n Simple_repeat Simple_repeat 2 22 0 1 1714 817 140 88 7 chr5 148060089 148060226 -4477033 - B1_Mur2 SINE Alu -1 148 1 1 1714 684 283 37 11 chr5 148060301 148060490 -4476769 + B3 SINE B2 17 210 -6 1 1714 1169 68 0 0 chr5 148060566 148060713 -4476546 + B1_Mus2 SINE Alu 1 147 0 1 1714 27 0 0 0 chr5 148060713 148060740 -4476519 + AT_rich Low_complexity Low_complexity 1 27 0 1 1714 280 331 199 72 chr5 148060952 148061118 -4476141 + B3 SINE B2 2 188 -28 1 1714 1515 43 27 5 chr5 148061199 148061386 -4475873 - B2_Mm1a SINE B2 -1 192 2 1 1714 242 163 0 0 chr5 148061545 148061588 -4475671 - U3 snRNA snRNA -164 53 11 1 1714 1979 120 10 7 chr5 148061653 148061946 -4475313 - ORR1A3 LTR MaLR -8 318 25 1 1714 288 0 0 0 chr5 148062053 148062085 -4475174 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1 1714 868 158 0 0 chr5 148062088 148062221 -4475038 - B1_Mur2 SINE Alu -15 134 2 1 1714 754 184 81 0 chr5 148062386 148062522 -4474737 + B1_Mur1 SINE Alu 3 149 0 1 1714 1080 245 93 74 chr5 148062558 148062911 -4474348 + ORR1D2 LTR MaLR 10 369 -1 1 1714 1452 82 0 20 chr5 148063482 148063680 -4473579 + B2_Mm2 SINE B2 1 194 -1 1 1714 753 242 84 6 chr5 148063700 148063740 -4473519 + B3 SINE B2 1 40 -176 1 1714 180 0 0 0 chr5 148063740 148063760 -4473499 + (TC)n Simple_repeat Simple_repeat 2 21 0 1 1714 753 242 84 6 chr5 148063760 148063885 -4473374 + B3 SINE B2 41 178 -38 1 1714 437 0 19 0 chr5 148063910 148063963 -4473296 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 1 1714 23 54 0 0 chr5 148063980 148064017 -4473242 + AT_rich Low_complexity Low_complexity 1 37 0 1 1714 846 182 0 39 chr5 148064190 148064327 -4472932 + B1_Mus1 SINE Alu 1 137 -11 1 1714 222 37 0 0 chr5 148064327 148064354 -4472905 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1 1714 846 182 0 39 chr5 148064354 148064370 -4472889 + B1_Mus1 SINE Alu 138 148 0 1 1714 583 252 64 32 chr5 148064443 148064599 -4472660 + RSINE1 SINE B4 5 165 0 1 1714 248 329 0 0 chr5 148064606 148064691 -4472568 + (CACG)n Simple_repeat Simple_repeat 2 86 0 1 1714 618 109 0 0 chr5 148064843 148064935 -4472324 + (TTCC)n Simple_repeat Simple_repeat 4 95 0 1 1714 1223 274 68 20 chr5 148065441 148065795 -4471464 - MTEb LTR MaLR -3 376 6 1 1714 207 175 0 0 chr5 148065893 148065933 -4471326 + G-rich Low_complexity Low_complexity 1 40 0 1 1714 281 247 69 23 chr5 148066079 148066166 -4471093 + MTEa LTR MaLR 289 379 0 1 1714 455 265 108 35 chr5 148066372 148066617 -4470642 + RMER10A LTR ERVL 12 269 -129 1 1714 1136 183 19 9 chr5 148067030 148067240 -4470019 + B3 SINE B2 5 216 0 1 1714 1226 48 7 0 chr5 148067265 148067411 -4469848 + B1_Mus1 SINE Alu 2 148 0 1 1714 271 175 25 12 chr5 148067413 148067494 -4469765 + (TAAA)n Simple_repeat Simple_repeat 2 83 0 1 1714 1352 96 5 0 chr5 148067732 148067919 -4469340 + B2_Mm1t SINE B2 2 189 -4 1 1714 180 0 0 0 chr5 148067938 148067958 -4469301 + (CA)n Simple_repeat Simple_repeat 1 20 0 1 1714 22 0 0 0 chr5 148067975 148067997 -4469262 + AT_rich Low_complexity Low_complexity 1 22 0 1 1714 660 213 0 56 chr5 148068014 148068158 -4469101 + B1_Mur3 SINE Alu 1 136 -13 1 1714 222 37 0 0 chr5 148068158 148068185 -4469074 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 1 1714 474 293 149 64 chr5 148068320 148069071 -4468188 - L1MDa LINE L1 -4550 2083 1269 1 1714 1229 99 0 32 chr5 148069096 148069256 -4468003 + B2_Mm2 SINE B2 2 161 -34 1 1714 306 0 0 0 chr5 148069256 148069290 -4467969 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 1 1714 1229 99 0 32 chr5 148069290 148069316 -4467943 + B2_Mm2 SINE B2 162 182 -13 1 1714 387 0 0 0 chr5 148069321 148069364 -4467895 + (TG)n Simple_repeat Simple_repeat 1 43 0 1 1714 776 269 0 46 chr5 148069387 148069562 -4467697 + B3A SINE B2 5 171 -27 1 1714 204 40 0 0 chr5 148069564 148069589 -4467670 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1 1714 319 51 0 0 chr5 148069654 148069693 -4467566 + (GAA)n Simple_repeat Simple_repeat 3 41 0 2 1714 831 139 0 0 chr5 148069693 148069873 -4467386 + (GGA)n Simple_repeat Simple_repeat 1 180 0 2 1714 187 289 19 19 chr5 148070312 148070365 -4466894 + L2c LINE L2 3303 3355 -32 2 1714 830 255 39 0 chr5 148070400 148070608 -4466651 + B3 SINE B2 1 216 0 2 1714 1298 50 76 22 chr5 148071286 148071470 -4465789 + B2_Mm2 SINE B2 1 194 -1 2 1714 786 168 41 14 chr5 148071801 148071946 -4465313 + B1_Mur3 SINE Alu 1 149 0 2 1714 612 0 0 0 chr5 148072126 148072194 -4465065 + (TC)n Simple_repeat Simple_repeat 2 69 0 2 1714 525 80 0 0 chr5 148072194 148072268 -4464991 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1714 237 284 85 21 chr5 148072271 148072377 -4464882 + L2b LINE L2 3244 3405 -21 2 1714 450 0 0 0 chr5 148072788 148072838 -4464421 + (TG)n Simple_repeat Simple_repeat 2 51 0 2 1714 628 193 11 0 chr5 148073180 148073295 -4463964 + B1_Mur1 SINE Alu 3 148 -1 2 1714 353 234 138 0 chr5 148073552 148073646 -4463613 - B3 SINE B2 -38 178 72 2 1714 724 241 38 28 chr5 148074548 148074729 -4462530 + B3 SINE B2 2 188 -28 2 1714 522 46 0 0 chr5 148074729 148074794 -4462465 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 1714 724 241 38 28 chr5 148074794 148074825 -4462434 + B3 SINE B2 189 216 0 2 1714 1359 100 26 0 chr5 148076419 148076609 -4460650 - B2_Mm2 SINE B2 0 195 1 2 1714 624 271 30 117 chr5 148076674 148076904 -4460355 + ID_B1 SINE B4 2 211 -13 2 1714 1053 184 69 15 chr5 148076983 148077187 -4460072 + B3 SINE B2 1 215 -1 2 1714 408 71 0 0 chr5 148077224 148077280 -4459979 + (TATG)n Simple_repeat Simple_repeat 4 59 0 2 1714 669 286 26 0 chr5 148077280 148077434 -4459825 - B3A SINE B2 -39 159 2 2 1714 1003 191 269 21 chr5 148078067 148078394 -4458865 + MTD LTR MaLR 3 411 -8 2 1714 23 0 0 0 chr5 148078720 148078743 -4458516 + AT_rich Low_complexity Low_complexity 1 23 0 2 1714 324 64 0 0 chr5 148078825 148078872 -4458387 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1714 444 51 0 0 chr5 148079452 148079511 -4457748 + (CA)n Simple_repeat Simple_repeat 2 60 0 2 1714 444 204 120 70 chr5 148081235 148081377 -4455882 + B1F1 SINE Alu 1 149 0 2 1714 360 97 0 0 chr5 148083423 148083485 -4453774 + (A)n Simple_repeat Simple_repeat 1 62 0 2 1714 270 356 22 36 chr5 148085032 148085169 -4452090 + RSINE1 SINE B4 29 163 -2 2 1714 380 225 106 24 chr5 148085315 148085438 -4451821 - B1_Mur1 SINE Alu -7 142 10 2 1714 201 222 0 0 chr5 148086841 148086877 -4450382 + C-rich Low_complexity Low_complexity 1 36 0 2 1714 234 261 0 42 chr5 148087410 148087482 -4449777 - YREP_Mm Unknown Unknown -1488 324 256 2 1714 783 146 46 0 chr5 148087425 148087555 -4449704 + B1_Mus1 SINE Alu 6 141 -7 2 1714 192 250 178 14 chr5 148087912 148087985 -4449274 + MIR SINE MIR 159 243 -19 2 1714 262 0 53 0 chr5 148089052 148089090 -4448169 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2 1714 657 194 193 7 chr5 148090082 148090217 -4447042 - B3 SINE B2 -56 160 1 2 1714 552 106 0 0 chr5 148090439 148090524 -4446735 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 2 1714 696 203 23 0 chr5 148090541 148090669 -4446590 - B1_Mur1 SINE Alu -15 134 4 2 1714 903 67 0 0 chr5 148090670 148090789 -4446470 + (TTCC)n Simple_repeat Simple_repeat 4 122 0 2 1714 343 92 31 0 chr5 148091533 148091598 -4445661 - Lx5 LINE L1 -3 7047 6981 2 1714 1988 131 168 13 chr5 148091598 148092130 -4445129 - Lx5 LINE L1 -182 6868 6255 2 1714 282 200 0 0 chr5 148092156 148092206 -4445053 + ID4 SINE ID 12 61 -22 2 1714 230 234 219 0 chr5 148092371 148092435 -4444824 + ID4_ SINE ID 1 78 -5 2 1714 3252 51 5 2 chr5 148093600 148093995 -4443264 - MTA_Mm LTR MaLR 0 396 1 2 1714 1227 73 44 22 chr5 148094277 148094459 -4442800 - B2_Mm2 SINE B2 -9 186 1 2 1714 296 282 13 0 chr5 148094546 148094624 -4442635 + MLT1E2 LTR MaLR 41 119 -508 2 1714 286 235 0 0 chr5 148095184 148095235 -4442024 + B3 SINE B2 80 130 -86 2 1714 238 236 42 0 chr5 148095273 148095345 -4441914 + (CAAA)n Simple_repeat Simple_repeat 2 76 0 2 1714 575 248 0 108 chr5 148095357 148095524 -4441735 + B3 SINE B2 2 150 -66 2 1714 216 0 0 0 chr5 148095542 148095566 -4441693 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 1714 301 361 161 14 chr5 148095618 148095829 -4441430 + L4 LINE RTE 1619 1860 -169 2 1714 212 328 99 50 chr5 148095875 148096016 -4441243 + MIRb SINE MIR 61 208 -60 2 1714 1076 194 20 0 chr5 148096016 148096217 -4441042 + B3 SINE B2 1 205 -11 2 1714 234 318 34 11 chr5 148096330 148096419 -4440840 + Charlie9 DNA MER1_type 7 97 -2660 2 1714 279 257 0 51 chr5 148096419 148096497 -4440762 + ID4 SINE ID 4 77 -6 2 1714 537 145 42 12 chr5 148096510 148096677 -4440582 + (CA)n Simple_repeat Simple_repeat 1 172 0 2 1714 262 107 18 18 chr5 148096694 148096751 -4440508 + (CA)n Simple_repeat Simple_repeat 1 57 0 2 1714 351 254 24 8 chr5 148096840 148096934 -4440325 - PB1D9 SINE Alu -15 102 3 2 1714 743 81 6 257 chr5 148096962 148097145 -4440114 + B1_Mus1 SINE Alu 1 137 -11 2 1714 383 0 0 21 chr5 148097145 148097193 -4440066 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 2 1714 296 289 106 16 chr5 148097227 148097350 -4439909 + B1F2 SINE Alu 3 136 -13 2 1714 812 201 0 0 chr5 148097554 148097693 -4439566 + B3 SINE B2 78 216 0 2 1714 571 218 17 55 chr5 148097691 148097716 -4439543 + ID_B1 SINE B4 81 183 -109 2 1714 1002 53 0 29 chr5 148097716 148097852 -4439407 + B1_Mur4 SINE Alu 19 150 0 2 1714 571 218 17 55 chr5 148097852 148097864 -4439395 + ID_B1 SINE B4 184 243 -49 2 1714 1462 80 16 0 chr5 148098014 148098202 -4439057 + B2_Mm2 SINE B2 1 191 -4 2 1714 25 31 0 0 chr5 148098389 148098421 -4438838 + AT_rich Low_complexity Low_complexity 1 32 0 2 1714 792 189 124 50 chr5 148098554 148098755 -4438504 + B3 SINE B2 1 216 0 2 1714 774 207 7 0 chr5 148098762 148098897 -4438362 + B1_Mur2 SINE Alu 1 136 -13 2 1714 315 0 0 0 chr5 148098899 148098934 -4438325 + (TGG)n Simple_repeat Simple_repeat 2 36 0 2 1714 438 338 42 42 chr5 148099026 148099193 -4438066 + MLT1G LTR MaLR 413 579 -12 2 1714 429 36 0 0 chr5 148099289 148099344 -4437915 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 2 1714 339 159 42 28 chr5 148099358 148099429 -4437830 - HAL1-3A_ME LINE L1 -811 2047 1976 2 1714 613 255 6 92 chr5 148099597 148099761 -4437498 - RSINE1 SINE B4 -2 163 14 2 1714 804 157 45 0 chr5 148099807 148099941 -4437318 - B1_Mur2 SINE Alu -3 146 7 2 1714 375 256 37 67 chr5 148099839 148099973 -4437286 - MT2B LTR ERVL -337 264 135 2 1714 565 105 21 0 chr5 148100088 148100183 -4437076 + (TG)n Simple_repeat Simple_repeat 1 97 0 2 1714 399 269 186 59 chr5 148100209 148100446 -4436813 - B4A SINE B4 -21 271 5 2 1714 806 150 20 41 chr5 148100472 148100618 -4436641 + B1_Mur1 SINE Alu 1 143 -6 2 1714 715 157 97 57 chr5 148100629 148100805 -4436454 + B2_Mm2 SINE B2 3 185 -10 2 1714 425 19 0 18 chr5 148100815 148100870 -4436389 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 2 1714 2403 116 3 0 chr5 148100902 148101238 -4436021 + ORR1A1 LTR MaLR 1 337 -9 2 1714 423 0 0 0 chr5 148101238 148101285 -4435974 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 2 1714 1371 79 21 0 chr5 148101484 148101673 -4435586 + B2_Mm1t SINE B2 1 193 0 2 1714 830 229 30 40 chr5 148101734 148101752 -4435507 + B3A SINE B2 1 13 -185 2 1714 2375 214 72 3 chr5 148101752 148102324 -4434935 - RMER19C LTR ERVK 0 611 1 2 1714 830 229 30 40 chr5 148102324 148102505 -4434754 + B3A SINE B2 14 198 0 2 1714 841 253 113 5 chr5 148102554 148102749 -4434510 + B3 SINE B2 1 216 0 2 1714 1013 63 222 25 chr5 148102760 148102922 -4434337 + B2_Mm2 SINE B2 1 194 -1 2 1714 1242 48 0 0 chr5 148103011 148103158 -4434101 + B1_Mus2 SINE Alu 1 147 0 2 1714 266 0 29 0 chr5 148103277 148103311 -4433948 + (ATTG)n Simple_repeat Simple_repeat 2 36 0 2 1714 408 198 127 0 chr5 148103363 148103479 -4433780 - B3 SINE B2 -65 130 2 2 1714 267 131 92 62 chr5 148105108 148105173 -4432086 - MurSatRep1 Unknown Unknown -1841 296 230 2 1714 508 81 149 0 chr5 148105196 148105283 -4431976 + B1_Mur4 SINE Alu 41 140 -10 2 1714 339 200 128 47 chr5 148105345 148105464 -4431795 + B3A SINE B2 45 162 -33 2 1714 533 191 131 31 chr5 148105489 148105619 -4431640 + B1_Mur1 SINE Alu 1 143 -6 2 1714 309 194 0 0 chr5 148106044 148106106 -4431153 + RSINE1 SINE B4 2 63 -102 2 1714 306 241 96 48 chr5 148106287 148106370 -4430889 + ID_B1 SINE B4 100 186 -38 2 1714 591 263 0 36 chr5 148106433 148106571 -4430688 - B1_Mur1 SINE Alu -1 148 16 2 1714 343 308 13 71 chr5 148106571 148106587 -4430672 - ID_B1 SINE B4 -1 223 79 2 1714 956 141 14 32 chr5 148106766 148106965 -4430294 - B3 SINE B2 -8 187 2 2 1714 230 0 33 0 chr5 148106977 148107007 -4430252 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2 1714 567 0 0 0 chr5 148107538 148107601 -4429658 + (TTTC)n Simple_repeat Simple_repeat 1 63 0 2 1714 960 173 0 0 chr5 148107603 148107782 -4429477 + CT-rich Low_complexity Low_complexity 2 180 0 2 1714 801 153 44 0 chr5 148107818 148107955 -4429304 + B1_Mur2 SINE Alu 7 149 0 2 1714 748 181 0 16 chr5 148107959 148108088 -4429171 - B1_Mur4 SINE Alu -13 137 11 2 1714 287 256 85 113 chr5 148107981 148108122 -4429137 - MT2B LTR ERVL -337 264 128 2 1714 1731 21 0 0 chr5 148108123 148108316 -4428943 + B2_Mm1a SINE B2 1 193 0 3 1714 798 150 37 33 chr5 148108339 148108534 -4428725 + B3 SINE B2 1 192 -1 3 1714 1091 53 8 0 chr5 148108542 148108675 -4428584 + B1_Mm SINE Alu 1 134 -13 3 1714 710 143 127 0 chr5 148108703 148108829 -4428430 + B1_Mur3 SINE Alu 5 146 -3 3 1714 459 0 0 0 chr5 148109190 148109241 -4428018 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1714 1294 89 5 45 chr5 148109921 148110122 -4427137 + B2_Mm2 SINE B2 1 193 -2 3 1714 878 179 80 20 chr5 148110289 148110489 -4426770 - B3 SINE B2 0 216 5 3 1715 261 83 0 0 chr5 148113581 148113617 -4423642 + (CTG)n Simple_repeat Simple_repeat 2 37 0 3 1715 536 257 83 68 chr5 148114135 148114327 -4422932 - B3A SINE B2 -3 195 1 3 1715 539 188 10 19 chr5 148114388 148114491 -4422768 - URR1B DNA MER1_type -30 195 94 3 1715 231 0 0 0 chr5 148114508 148114536 -4422723 - URR1B DNA MER1_type -193 32 5 3 1715 21 57 0 0 chr5 148118101 148118136 -4419123 + GC_rich Low_complexity Low_complexity 1 35 0 3 1715 240 200 20 0 chr5 148118720 148118770 -4418489 + CT-rich Low_complexity Low_complexity 2 52 0 3 1715 845 216 55 10 chr5 148119811 148120012 -4417247 + B3 SINE B2 7 216 0 3 1715 369 0 0 0 chr5 148121392 148121433 -4415826 + (CCCCCA)n Simple_repeat Simple_repeat 2 42 0 3 1715 192 40 0 0 chr5 148124037 148124062 -4413197 + (T)n Simple_repeat Simple_repeat 1 25 0 3 1715 22 0 0 0 chr5 148124292 148124314 -4412945 + GC_rich Low_complexity Low_complexity 1 22 0 3 1715 336 24 0 0 chr5 148124314 148124355 -4412904 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1715 450 0 0 0 chr5 148125201 148125251 -4412008 + (TG)n Simple_repeat Simple_repeat 2 51 0 3 1715 516 72 0 0 chr5 148125752 148125821 -4411438 + (TC)n Simple_repeat Simple_repeat 1 69 0 3 1715 243 0 0 0 chr5 148126175 148126202 -4411057 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 1715 199 54 26 26 chr5 148127613 148127651 -4409608 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 3 1715 278 233 52 72 chr5 148128303 148128400 -4408859 + B3A SINE B2 104 198 0 3 1715 21 0 0 0 chr5 148128400 148128421 -4408838 + AT_rich Low_complexity Low_complexity 1 21 0 3 1715 360 0 0 0 chr5 148129278 148129318 -4407941 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 1715 335 276 138 61 chr5 148129959 148130140 -4407119 - B3A SINE B2 0 198 4 3 1715 292 289 143 11 chr5 148130140 148130231 -4407028 - PB1D10 SINE Alu -14 103 1 3 1715 247 318 109 43 chr5 148130151 148130243 -4407016 - ID_B1 SINE B4 -54 170 73 3 1715 619 242 21 78 chr5 148130280 148130473 -4406786 - B3A SINE B2 -16 182 1 3 1715 251 333 75 56 chr5 148130599 148130812 -4406447 + L2 LINE L2 2566 2782 -637 3 1715 301 238 23 62 chr5 148130888 148130933 -4406326 + (CAGAGA)n Simple_repeat Simple_repeat 2 43 0 3 1715 1018 45 74 22 chr5 148130933 148131060 -4406199 + B1_Mus2 SINE Alu 1 135 -12 3 1715 252 0 0 0 chr5 148131060 148131088 -4406171 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 3 1715 301 238 23 62 chr5 148131095 148131179 -4406080 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 3 1715 186 182 0 43 chr5 148131187 148131256 -4406003 + GA-rich Low_complexity Low_complexity 4 69 0 3 1715 852 194 0 20 chr5 148131553 148131700 -4405559 - B1_Mur4 SINE Alu -5 145 2 3 1715 198 103 0 0 chr5 148131775 148131804 -4405455 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 1715 345 241 12 37 chr5 148131804 148131886 -4405373 + MTD LTR MaLR 4 83 -336 3 1715 880 235 11 11 chr5 148132015 148132196 -4405063 + B3A SINE B2 2 182 -16 3 1715 703 126 128 45 chr5 148132222 148132355 -4404904 - B1_Mus1 SINE Alu 0 148 5 3 1715 839 10 0 10 chr5 148132393 148132494 -4404765 + (TCTCC)n Simple_repeat Simple_repeat 2 101 0 3 1715 327 141 0 0 chr5 148132590 148132654 -4404605 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 1715 851 219 48 67 chr5 148132658 148132868 -4404391 - B3 SINE B2 -9 207 2 3 1715 422 135 27 0 chr5 148133454 148133528 -4403731 - B1_Mus2 SINE Alu -31 116 41 3 1715 291 225 28 14 chr5 148134132 148134204 -4403055 - ID4_ SINE ID -10 73 1 3 1715 234 245 19 19 chr5 148134335 148134389 -4402870 - B3 SINE B2 -11 205 152 3 1715 218 240 0 0 chr5 148134439 148134489 -4402770 + B3 SINE B2 49 98 -118 3 1715 24 0 0 0 chr5 148134632 148134656 -4402603 + AT_rich Low_complexity Low_complexity 1 24 0 3 1715 300 27 0 0 chr5 148134680 148134717 -4402542 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 1715 576 222 62 16 chr5 148134738 148134866 -4402393 + MTD LTR MaLR 269 402 -17 3 1715 210 227 0 0 chr5 148134900 148134944 -4402315 + G-rich Low_complexity Low_complexity 3 46 0 3 1715 429 314 36 36 chr5 148135342 148135507 -4401752 - Lx9 LINE L1 -335 7309 7145 3 1715 366 23 0 0 chr5 148135519 148135562 -4401697 + (TTG)n Simple_repeat Simple_repeat 2 44 0 3 1715 1116 66 0 0 chr5 148135562 148135698 -4401561 - B1_Mus1 SINE Alu -11 137 2 3 1715 435 284 35 0 chr5 148135847 148135988 -4401271 - Lx8 LINE L1 -442 7031 6886 3 1715 378 0 0 0 chr5 148136115 148136157 -4401102 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 1715 881 169 94 17 chr5 148136370 148136398 -4400861 + B2_Mm2 SINE B2 2 37 -158 3 1715 3072 38 7 102 chr5 148136398 148136645 -4400614 - MTB LTR MaLR 0 400 197 3 1715 1312 27 0 0 chr5 148136645 148136792 -4400467 - B1_Mm SINE Alu 0 147 1 3 1715 3072 38 7 102 chr5 148136792 148136986 -4400273 - MTB LTR MaLR -204 196 1 3 1715 881 169 94 17 chr5 148136986 148137137 -4400122 + B2_Mm2 SINE B2 38 195 0 3 1715 225 224 20 0 chr5 148137137 148137186 -4400073 + GA-rich Low_complexity Low_complexity 1 50 0 3 1715 4198 149 122 9 chr5 148137982 148138555 -4398704 - RMER19B LTR ERVK -17 885 240 3 1715 180 0 0 0 chr5 148138555 148138575 -4398684 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3 1715 4198 149 122 9 chr5 148138575 148138795 -4398464 - RMER19B LTR ERVK -663 239 3 3 1715 225 0 0 0 chr5 148139143 148139168 -4398091 + (TC)n Simple_repeat Simple_repeat 2 26 0 3 1715 252 0 0 0 chr5 148139168 148139195 -4398064 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1715 872 179 98 35 chr5 148139321 148139524 -4397735 - B3 SINE B2 0 216 1 3 1715 378 185 15 0 chr5 148140051 148140116 -4397143 + PB1D10 SINE Alu 37 102 -15 3 1715 628 62 265 34 chr5 148140114 148140231 -4397028 + B1_Mur4 SINE Alu 7 150 0 3 1715 23 0 0 0 chr5 148140261 148140284 -4396975 + AT_rich Low_complexity Low_complexity 1 23 0 3 1715 189 0 0 0 chr5 148140284 148140305 -4396954 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 1715 293 88 35 0 chr5 148140307 148140364 -4396895 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 3 1715 244 86 0 0 chr5 148140446 148140481 -4396778 + ORR1D2 LTR MaLR 336 370 0 3 1715 243 0 0 0 chr5 148140529 148140556 -4396703 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1715 1181 83 13 0 chr5 148140913 148141070 -4396189 + B2_Mm2 SINE B2 3 161 -34 3 1715 473 0 18 0 chr5 148141071 148141128 -4396131 + (GA)n Simple_repeat Simple_repeat 2 59 0 3 1715 1119 91 215 0 chr5 148141498 148141684 -4395575 + URR1A DNA MER1_type 1 226 0 3 1715 740 168 7 34 chr5 148141721 148141869 -4395390 + ID_B1 SINE B4 81 224 0 3 1715 467 219 84 19 chr5 148142071 148142178 -4395081 + PB1D10 SINE Alu 2 115 -2 3 1715 243 61 0 0 chr5 148142220 148142253 -4395006 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1715 975 225 21 5 chr5 148142997 148143185 -4394074 + B3A SINE B2 1 191 -7 3 1715 802 215 108 0 chr5 148143238 148143433 -4393826 - B3 SINE B2 0 216 1 3 1715 1107 149 0 63 chr5 148143442 148143489 -4393770 - B2_Mm2 SINE B2 0 195 161 3 1715 347 57 38 0 chr5 148143489 148143542 -4393717 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 3 1715 1402 13 0 0 chr5 148143542 148143701 -4393558 - B2_Mm1a SINE B2 -33 160 2 3 1715 260 271 70 37 chr5 148143999 148144157 -4393102 - MIRm SINE MIR -38 170 2 3 1715 228 205 61 104 chr5 148144760 148144923 -4392336 + RMER17D LTR ERVK 227 382 -507 3 1715 268 221 205 13 chr5 148144919 148144997 -4392262 - PB1D10 SINE Alu -20 97 5 3 1715 561 210 142 24 chr5 148145035 148145162 -4392097 - B1_Mur2 SINE Alu -2 147 6 3 1715 293 242 0 133 chr5 148145074 148145179 -4392080 - MT2B LTR ERVL -356 245 155 3 1715 1204 95 6 23 chr5 148145192 148145353 -4391906 + B2_Mm2 SINE B2 2 161 -34 3 1715 654 49 0 0 chr5 148145353 148145435 -4391824 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 3 1715 1204 95 6 23 chr5 148145435 148145446 -4391813 + B2_Mm2 SINE B2 162 171 -24 3 1715 824 136 0 109 chr5 148145478 148145502 -4391757 + B1_Mus2 SINE Alu 1 20 -127 3 1715 1267 104 11 0 chr5 148145502 148145684 -4391575 - B2_Mm1a SINE B2 -8 185 2 3 1715 824 136 0 109 chr5 148145684 148145824 -4391435 + B1_Mus2 SINE Alu 21 147 0 3 1715 183 42 0 0 chr5 148146574 148146598 -4390661 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1715 1216 176 15 0 chr5 148146600 148146804 -4390455 - B3 SINE B2 -9 207 1 3 1715 759 213 0 0 chr5 148146897 148147024 -4390235 - B3 SINE B2 -87 129 3 3 1715 962 162 7 0 chr5 148147094 148147242 -4390017 - B1_Mur4 SINE Alu 0 150 2 3 1715 308 173 61 12 chr5 148147294 148147376 -4389883 + L1VL2 LINE L1 171 256 -6079 3 1715 14585 65 30 7 chr5 148147376 148149814 -4387445 + L1VL2 LINE L1 477 2988 -627 3 1715 715 128 5 58 chr5 148149921 148150111 -4387148 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 3 1715 1247 54 0 0 chr5 148150135 148150282 -4386977 - B1_Mus1 SINE Alu -1 147 1 3 1715 586 182 121 0 chr5 148150288 148150420 -4386839 - B1_Mur1 SINE Alu 0 149 2 3 1715 200 262 139 23 chr5 148151216 148151302 -4385957 + MIRm SINE MIR 92 187 -89 3 1715 202 182 0 0 chr5 148151372 148151405 -4385854 + C-rich Low_complexity Low_complexity 1 33 0 3 1715 238 219 78 0 chr5 148151478 148151542 -4385717 - ID4 SINE ID -13 70 2 4 1715 877 99 0 96 chr5 148151595 148151752 -4385507 + B1_Mur4 SINE Alu 9 150 0 4 1715 549 252 49 74 chr5 148151776 148151939 -4385320 - RSINE1 SINE B4 0 165 7 4 1715 280 180 35 18 chr5 148151939 148152052 -4385207 + (TCTA)n Simple_repeat Simple_repeat 2 116 0 4 1715 819 254 34 0 chr5 148152105 148152282 -4384977 - B3A SINE B2 -15 183 1 4 1715 523 219 17 9 chr5 148153223 148153338 -4383921 + PB1D7 SINE Alu 4 119 -1 4 1715 559 264 53 26 chr5 148153381 148153533 -4383726 + RSINE1 SINE B4 2 157 -8 4 1715 438 20 0 0 chr5 148153537 148153588 -4383671 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1715 1326 81 38 5 chr5 148154302 148154488 -4382771 + B2_Mm2 SINE B2 1 192 -3 4 1715 1245 201 80 22 chr5 148154600 148154962 -4382297 + MT2A LTR ERVL 58 553 -48 4 1715 218 133 0 62 chr5 148155002 148155041 -4382218 + (TA)n Simple_repeat Simple_repeat 1 37 0 4 1715 1268 93 11 5 chr5 148155041 148155225 -4382034 - B2_Mm2 SINE B2 -9 186 2 4 1715 218 133 0 62 chr5 148155225 148155233 -4382026 + (TA)n Simple_repeat Simple_repeat 1 8 0 4 1715 243 127 15 45 chr5 148155251 148155317 -4381942 + MT2A LTR ERVL 470 533 0 4 1715 280 294 156 32 chr5 148155317 148155489 -4381770 + LTR48 LTR ERV1 551 745 -42 4 1715 485 268 53 9 chr5 148156610 148156723 -4380536 - B1_Mur2 SINE Alu -28 121 4 4 1715 874 249 11 26 chr5 148156848 148157016 -4380243 + B3 SINE B2 1 167 -49 4 1715 954 136 0 0 chr5 148157016 148157171 -4380088 + (CATA)n Simple_repeat Simple_repeat 4 158 0 4 1715 874 249 11 26 chr5 148157171 148157192 -4380067 + B3 SINE B2 168 187 -29 4 1715 558 254 9 0 chr5 148157275 148157385 -4379874 + RSINE1 SINE B4 8 118 -47 4 1715 336 294 88 0 chr5 148157514 148157616 -4379643 + MLT1A LTR MaLR 264 374 0 4 1715 798 208 68 17 chr5 148157644 148157820 -4379439 + B3 SINE B2 15 199 -17 4 1715 204 397 43 0 chr5 148157884 148158000 -4379259 - MIRb SINE MIR -26 242 122 4 1715 732 174 10 5 chr5 148158374 148158583 -4378676 + (CA)n Simple_repeat Simple_repeat 1 210 0 4 1715 525 231 0 17 chr5 148158560 148158736 -4378523 + (CATA)n Simple_repeat Simple_repeat 4 176 0 4 1715 659 158 11 38 chr5 148158792 148158976 -4378283 + (CATA)n Simple_repeat Simple_repeat 2 180 0 4 1715 620 205 11 14 chr5 148158942 148159306 -4377953 + (CA)n Simple_repeat Simple_repeat 1 362 0 4 1715 374 240 17 28 chr5 148159313 148159493 -4377766 + (CATA)n Simple_repeat Simple_repeat 1 178 0 4 1715 252 0 0 0 chr5 148160226 148160254 -4377005 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 4 1715 892 102 43 14 chr5 148160280 148160420 -4376839 - B1_Mur4 SINE Alu -1 149 6 4 1715 309 312 0 0 chr5 148160665 148160742 -4376517 + ID4 SINE ID 3 79 -4 4 1715 21 36 0 0 chr5 148160749 148160777 -4376482 + AT_rich Low_complexity Low_complexity 1 28 0 4 1715 251 242 32 21 chr5 148160782 148160875 -4376384 - Tigger7 DNA MER2_type -119 2372 2279 4 1715 365 312 0 0 chr5 148160875 148160984 -4376275 - Tigger7 DNA MER2_type -2373 118 10 4 1715 1853 111 39 39 chr5 148161813 148162121 -4375138 + RLTR15 LTR ERVK 52 359 0 4 1715 776 213 7 0 chr5 148162548 148162689 -4374570 - B1_Mur1 SINE Alu -6 143 2 4 1715 225 325 52 0 chr5 148163540 148163617 -4373642 - ID4_ SINE ID -2 81 1 4 1715 235 348 106 12 chr5 148163618 148163825 -4373434 - L2c LINE L2 -194 3181 2960 4 1715 1417 83 15 20 chr5 148163869 148164065 -4373194 - B2_Mm2 SINE B2 0 195 1 4 1715 374 296 72 44 chr5 148164612 148164863 -4372396 + L1MA4 LINE L1 5707 5964 -336 4 1715 189 0 0 0 chr5 148165172 148165193 -4372066 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4 1715 1170 58 0 0 chr5 148165193 148165331 -4371928 - B1_Mus1 SINE Alu -9 139 2 4 1715 376 70 27 27 chr5 148165507 148165580 -4371679 + (TCTCTG)n Simple_repeat Simple_repeat 6 78 0 4 1715 342 0 0 0 chr5 148165581 148165619 -4371640 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1715 272 229 200 0 chr5 148165698 148165768 -4371491 + PB1D10 SINE Alu 28 111 -6 4 1715 377 247 0 0 chr5 148165773 148165846 -4371413 + ID4_ SINE ID 3 75 -8 4 1715 1077 166 5 79 chr5 148167021 148167224 -4370035 - B3 SINE B2 -12 204 17 4 1715 384 234 0 0 chr5 148167267 148167344 -4369915 - PB1D10 SINE Alu -5 112 36 4 1715 261 301 64 50 chr5 148167284 148167424 -4369835 - MT2B2 LTR ERVL -333 251 110 4 1715 226 289 0 0 chr5 148168162 148168214 -4369045 + CT-rich Low_complexity Low_complexity 3 54 0 4 1715 219 139 0 0 chr5 148168216 148168252 -4369007 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 4 1715 688 108 0 26 chr5 148168266 148168380 -4368879 - PB1D10 SINE Alu -6 111 1 4 1715 424 250 200 0 chr5 148168827 148168947 -4368312 + B3 SINE B2 46 189 -27 4 1715 1088 163 34 24 chr5 148169201 148169408 -4367851 + B3 SINE B2 1 209 -7 4 1715 22 0 0 0 chr5 148169411 148169433 -4367826 + AT_rich Low_complexity Low_complexity 1 22 0 4 1715 1231 90 6 11 chr5 148169725 148169904 -4367355 + B2_Mm2 SINE B2 15 192 -3 4 1715 384 298 10 0 chr5 148170896 148171000 -4366259 + PB1D10 SINE Alu 5 109 -8 4 1715 240 224 16 49 chr5 148171379 148171440 -4365819 + ID4_ SINE ID 25 83 0 4 1715 543 110 0 0 chr5 148171600 148171673 -4365586 - B1_Mus2 SINE Alu -6 141 69 4 1715 346 262 287 0 chr5 148171703 148171867 -4365392 - ID_B1 SINE B4 -13 211 1 4 1715 1274 109 5 15 chr5 148171875 148171889 -4365370 - B2_Mm2 SINE B2 0 195 182 4 1715 1252 34 0 26 chr5 148171889 148172040 -4365219 - B1_Mm SINE Alu 0 147 1 4 1715 1274 109 5 15 chr5 148172040 148172068 -4365191 - B2_Mm2 SINE B2 -14 181 155 4 1715 555 90 0 0 chr5 148172068 148172146 -4365113 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 1715 1274 109 5 15 chr5 148172146 148172298 -4364961 - B2_Mm2 SINE B2 -41 154 3 4 1715 225 290 0 61 chr5 148172451 148172517 -4364742 + ID_B1 SINE B4 96 157 -67 4 1715 1006 173 41 16 chr5 148172520 148172714 -4364545 + B3 SINE B2 18 216 0 4 1715 482 0 17 0 chr5 148172913 148172971 -4364288 + (TG)n Simple_repeat Simple_repeat 1 59 0 4 1715 248 297 33 11 chr5 148173142 148173234 -4364025 - B1F1 SINE Alu -55 94 1 4 1715 482 212 0 29 chr5 148173539 148173641 -4363618 + B1_Mur1 SINE Alu 41 139 -10 4 1715 274 75 0 0 chr5 148173686 148173726 -4363533 + B2_Mm2 SINE B2 1 40 -155 4 1715 1678 21 11 0 chr5 148173726 148173917 -4363342 + B2_Mm1a SINE B2 1 193 0 4 1715 189 0 0 0 chr5 148173936 148173957 -4363302 + (A)n Simple_repeat Simple_repeat 1 21 0 4 1715 952 89 103 0 chr5 148173957 148174103 -4363156 + B2_Mm2 SINE B2 27 187 -8 4 1715 1238 108 23 0 chr5 148175045 148175221 -4362038 + B2_Mm2 SINE B2 2 181 -14 4 1715 550 225 8 8 chr5 148175917 148176038 -4361221 - B1_Mm SINE Alu -22 125 5 4 1715 656 169 35 49 chr5 148176250 148176393 -4360866 + B1_Mur4 SINE Alu 1 141 -9 4 1715 443 18 0 18 chr5 148176412 148176469 -4360790 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 4 1715 522 289 176 29 chr5 148176470 148176680 -4360579 + B4A SINE B4 1 241 -51 4 1715 533 209 323 0 chr5 148176681 148176839 -4360420 + B3 SINE B2 2 210 -6 4 1715 417 39 0 0 chr5 148176914 148176965 -4360294 + (CA)n Simple_repeat Simple_repeat 1 51 0 4 1715 640 229 0 32 chr5 148177000 148177126 -4360133 + B3A SINE B2 2 123 -75 4 1715 405 0 0 0 chr5 148177131 148177176 -4360083 + (CA)n Simple_repeat Simple_repeat 2 46 0 4 1715 441 0 0 0 chr5 148177176 148177224 -4360035 + (GA)n Simple_repeat Simple_repeat 2 50 0 4 1715 189 0 0 0 chr5 148177265 148177286 -4359973 + (CA)n Simple_repeat Simple_repeat 1 21 0 4 1715 288 255 27 2 chr5 148177513 148177599 -4359660 - Charlie5 DNA MER1_type -127 2497 2411 4 1715 575 220 33 60 chr5 148177649 148177833 -4359426 + B3A SINE B2 4 182 -16 4 1715 246 250 10 30 chr5 148178357 148178456 -4358803 + G-rich Low_complexity Low_complexity 2 98 0 4 1715 386 185 7 44 chr5 148178711 148178847 -4358412 + (TA)n Simple_repeat Simple_repeat 2 132 0 4 1715 225 300 50 0 chr5 148178852 148178912 -4358347 - B1_Mm SINE Alu -31 116 54 4 1715 268 259 0 0 chr5 148179068 148179126 -4358133 + B3A SINE B2 2 59 -139 4 1715 235 313 42 25 chr5 148179383 148179501 -4357758 - L2c LINE L2 -12 3375 3256 4 1715 246 170 132 0 chr5 148179619 148179672 -4357587 + RMER20B LTR ERVK 66 125 -502 4 1715 237 316 81 22 chr5 148179897 148180033 -4357226 + RMER20A LTR ERVK 364 507 -9 4 1715 936 229 14 19 chr5 148180114 148180328 -4356931 + B3 SINE B2 4 216 0 4 1715 494 266 48 0 chr5 148180388 148180512 -4356747 - RSINE1 SINE B4 -32 133 4 4 1715 304 275 0 114 chr5 148180588 148180608 -4356651 + MT2B LTR ERVL 149 154 -447 4 1715 667 179 9 7 chr5 148180608 148180733 -4356526 + B1_Mur2 SINE Alu 1 119 -1 4 1715 441 217 171 55 chr5 148181479 148181598 -4355661 + RSINE1 SINE B4 1 142 -23 4 1715 519 17 0 0 chr5 148181598 148181658 -4355601 + (TG)n Simple_repeat Simple_repeat 2 61 0 4 1715 441 217 171 55 chr5 148181658 148181684 -4355575 + RSINE1 SINE B4 143 163 -2 4 1715 243 203 152 0 chr5 148181717 148181776 -4355483 + tRNA-Ala-GCA tRNA tRNA 2 69 -6 4 1715 279 79 0 0 chr5 148181776 148181814 -4355445 + (CAAAT)n Simple_repeat Simple_repeat 2 39 0 4 1715 27 29 0 0 chr5 148182435 148182469 -4354790 + AT_rich Low_complexity Low_complexity 1 34 0 4 1715 637 197 0 41 chr5 148182475 148182597 -4354662 - B1F SINE Alu -5 144 28 4 1715 1024 133 0 11 chr5 148182597 148182779 -4354480 + (TTC)n Simple_repeat Simple_repeat 1 180 0 4 1715 240 241 225 33 chr5 148183623 148183743 -4353516 - MIR SINE MIR -115 147 5 4 1715 329 21 0 59 chr5 148183875 148183926 -4353333 + (T)n Simple_repeat Simple_repeat 1 48 0 4 1715 270 0 0 0 chr5 148184436 148184466 -4352793 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5 1715 784 176 0 22 chr5 148184466 148184600 -4352659 - B1_Mur1 SINE Alu -13 136 6 5 1715 410 157 0 12 chr5 148184882 148184966 -4352293 + (CA)n Simple_repeat Simple_repeat 2 84 0 5 1715 384 275 73 9 chr5 148185354 148185464 -4351795 + PB1D10 SINE Alu 1 117 0 5 1715 522 225 79 14 chr5 148185737 148185877 -4351382 + B1_Mur1 SINE Alu 1 149 0 5 1715 211 184 0 0 chr5 148186806 148186844 -4350415 - B3 SINE B2 -177 39 2 5 1715 344 247 112 34 chr5 148186919 148187047 -4350212 + B1F SINE Alu 7 143 -6 5 1715 38 22 0 0 chr5 148187727 148187772 -4349487 + AT_rich Low_complexity Low_complexity 1 45 0 5 1715 953 220 60 5 chr5 148187774 148187975 -4349284 - B3 SINE B2 0 216 5 5 1715 221 342 0 52 chr5 148188265 148188342 -4348917 + PB1D10 SINE Alu 1 73 -44 5 1715 2367 121 34 6 chr5 148188724 148189081 -4348178 + ORR1B2 LTR MaLR 1 367 0 5 1715 893 211 80 0 chr5 148189121 148189320 -4347939 + B3 SINE B2 2 216 0 5 1715 1513 231 82 61 chr5 148190179 148190392 -4346867 + RMER6A LTR ERVK 1 214 -542 5 1715 1374 57 11 11 chr5 148190392 148190571 -4346688 + B2_Mm1t SINE B2 1 179 -14 5 1715 1795 132 100 28 chr5 148190571 148190983 -4346276 + RMER6A LTR ERVK 159 588 -168 5 1715 401 205 60 12 chr5 148190978 148191062 -4346197 - B1_Mus2 SINE Alu -59 88 1 5 1715 622 139 130 0 chr5 148191119 148191229 -4346030 + RLTR11B LTR ERVK 1 125 -328 5 1715 293 87 0 0 chr5 148191229 148191275 -4345984 + RLTR11A2 LTR ERVK 1 46 -481 5 1715 256 103 0 0 chr5 148191274 148191313 -4345946 + RLTR11A2 LTR ERVK 7 45 -482 5 1715 2373 168 107 11 chr5 148191313 148191788 -4345471 + RLTR11A2 LTR ERVK 7 527 0 5 1715 1285 48 19 126 chr5 148191968 148192005 -4345254 + B2_Mm2 SINE B2 2 38 -157 5 1715 3143 30 0 11 chr5 148192005 148192381 -4344878 + L1Md_F3 LINE L1 6202 6573 -11 5 1715 1285 48 19 126 chr5 148192381 148192558 -4344701 + B2_Mm2 SINE B2 39 193 -2 5 1715 808 276 8 105 chr5 148192595 148192730 -4344529 + B3 SINE B2 1 120 -96 5 1715 1328 85 11 0 chr5 148192730 148192907 -4344352 - B2_Mm1t SINE B2 -14 179 1 5 1715 808 276 8 105 chr5 148192907 148193010 -4344249 + B3 SINE B2 121 216 0 5 1715 451 328 15 15 chr5 148193078 148193279 -4343980 + L1MC LINE L1 5425 5625 -2257 5 1715 1131 84 0 7 chr5 148193917 148194061 -4343198 + B1_Mus2 SINE Alu 5 147 0 5 1715 1015 234 0 5 chr5 148194420 148194626 -4342633 + B3 SINE B2 3 207 -9 5 1715 198 103 0 0 chr5 148194626 148194655 -4342604 + (TAA)n Simple_repeat Simple_repeat 1 29 0 5 1715 555 204 74 22 chr5 148194675 148194810 -4342449 + B3 SINE B2 1 142 -74 5 1715 3259 26 0 0 chr5 148195348 148195729 -4341530 - MTA_Mm LTR MaLR 0 396 16 5 1715 485 32 16 0 chr5 148195764 148195827 -4341432 + (TC)n Simple_repeat Simple_repeat 2 65 0 5 1715 1177 118 0 6 chr5 148196402 148196573 -4340686 - B2_Mm2 SINE B2 -10 185 16 5 1715 473 190 0 0 chr5 148196610 148196689 -4340570 + B1_Mur1 SINE Alu 70 148 -1 5 1715 344 304 104 27 chr5 148197298 148197506 -4339753 - L1MC4 LINE L1 -5213 1002 937 5 1715 1158 82 7 0 chr5 148197506 148197652 -4339607 - B1_Mus2 SINE Alu 0 147 1 5 1715 344 293 74 63 chr5 148197652 148197760 -4339499 - L1MC4 LINE L1 -5279 936 826 5 1715 844 153 22 0 chr5 148197762 148197899 -4339360 - B1_Mus1 SINE Alu -2 146 7 5 1715 394 241 69 119 chr5 148197787 148197916 -4339343 - MT2B LTR ERVL -323 278 154 5 1715 270 81 0 0 chr5 148197916 148197953 -4339306 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5 1715 394 241 69 119 chr5 148197953 148197983 -4339276 - MT2B LTR ERVL -448 153 127 5 1715 453 204 9 80 chr5 148197989 148198101 -4339158 + PB1D7 SINE Alu 9 112 -8 5 1715 230 263 77 26 chr5 148198177 148198255 -4339004 + ID4_ SINE ID 1 82 -1 5 1715 281 319 112 25 chr5 148198341 148198582 -4338677 - L1MEc LINE L1 -3153 3166 2905 5 1715 189 0 0 0 chr5 148198623 148198644 -4338615 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 5 1715 682 221 15 0 chr5 148199010 148199146 -4338113 - B1_Mur1 SINE Alu -10 139 2 5 1715 232 263 74 25 chr5 148199364 148199485 -4337774 - L1MEc LINE L1 -4076 2324 2198 5 1715 357 43 0 0 chr5 148199490 148199537 -4337722 + (TG)n Simple_repeat Simple_repeat 1 47 0 5 1715 1907 166 87 16 chr5 148199574 148199942 -4337317 - ORR1B1 LTR MaLR 0 394 1 5 1715 444 252 57 14 chr5 148199944 148200085 -4337174 - B4A SINE B4 -51 241 95 5 1715 2716 164 99 11 chr5 148200141 148200667 -4336592 - RMER15 LTR ERVL -3 572 1 5 1715 279 77 0 55 chr5 148200676 148200731 -4336528 + L1ME2 LINE L1 5255 5306 -2479 5 1715 477 283 95 38 chr5 148200981 148201245 -4336014 + L1ME2 LINE L1 5598 5876 -288 5 1715 426 230 50 0 chr5 148201248 148201348 -4335911 + B1_Mur1 SINE Alu 3 107 -42 5 1715 300 320 73 34 chr5 148201380 148201558 -4335701 + L1ME2 LINE L1 5893 6077 -102 5 1715 517 212 35 83 chr5 148202003 148202147 -4335112 + B1F SINE Alu 3 139 -10 5 1715 600 239 35 160 chr5 148202254 148202423 -4334836 - B3 SINE B2 0 195 48 5 1715 192 77 0 0 chr5 148202764 148202790 -4334469 + (GGGAGA)n Simple_repeat Simple_repeat 3 28 0 5 1715 471 219 54 101 chr5 148202853 148203021 -4334238 + RSINE1 SINE B4 5 164 -1 5 1715 229 235 171 24 chr5 148203569 148203739 -4333520 - RMER17C LTR ERVK -108 302 108 5 1715 950 143 13 20 chr5 148203999 148204149 -4333110 - B1_Mur4 SINE Alu 0 150 2 5 1715 498 33 0 0 chr5 148204294 148204354 -4332905 + (CA)n Simple_repeat Simple_repeat 2 61 0 5 1715 346 248 68 19 chr5 148204980 148205083 -4332176 + PB1D10 SINE Alu 3 110 -7 5 1715 895 170 0 14 chr5 148205095 148205238 -4332021 + B1_Mus1 SINE Alu 3 143 -5 5 1715 258 32 0 0 chr5 148205242 148205273 -4331986 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 5 1715 24 77 0 0 chr5 148205278 148205330 -4331929 + AT_rich Low_complexity Low_complexity 1 52 0 5 1715 723 208 0 39 chr5 148205386 148205541 -4331718 + B1_Mur1 SINE Alu 1 149 0 5 1715 201 147 0 29 chr5 148205594 148205629 -4331630 + CT-rich Low_complexity Low_complexity 3 36 0 5 1715 468 0 0 0 chr5 148205989 148206041 -4331218 + (TC)n Simple_repeat Simple_repeat 1 52 0 5 1715 351 0 0 0 chr5 148206041 148206079 -4331180 + (CA)n Simple_repeat Simple_repeat 1 39 0 5 1715 24 0 0 0 chr5 148206285 148206309 -4330950 + AT_rich Low_complexity Low_complexity 1 24 0 5 1715 394 309 166 51 chr5 148206389 148206624 -4330635 - B4A SINE B4 -20 272 11 5 1715 824 222 88 0 chr5 148206715 148206886 -4330373 + B3 SINE B2 1 186 -30 5 1715 598 241 0 0 chr5 148206884 148206992 -4330267 + RSINE1 SINE B4 43 150 -15 5 1715 726 62 0 0 chr5 148206992 148207088 -4330171 + (GA)n Simple_repeat Simple_repeat 2 97 0 5 1715 878 185 0 0 chr5 148207088 148207223 -4330036 + B1_Mur4 SINE Alu 3 137 -13 5 1715 470 17 17 0 chr5 148207234 148207293 -4329966 + (CA)n Simple_repeat Simple_repeat 1 60 0 5 1715 630 259 33 49 chr5 148207583 148207766 -4329493 - B3A SINE B2 -16 182 3 5 1715 1728 175 71 12 chr5 148208070 148208394 -4328865 + ORR1D1 LTR MaLR 32 374 0 5 1715 4720 206 69 104 chr5 148208394 148209025 -4328234 + ORR1D1-int LTR MaLR 47 653 -717 5 1715 189 0 0 0 chr5 148209025 148209046 -4328213 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 5 1715 4720 206 69 104 chr5 148209046 148209783 -4327476 + ORR1D1-int LTR MaLR 654 1367 -3 5 1715 1752 183 30 30 chr5 148209794 148210160 -4327099 + ORR1D1 LTR MaLR 9 374 0 5 1715 327 235 25 0 chr5 148213115 148213196 -4324063 + ID2 SINE ID 1 83 0 5 1715 222 171 0 0 chr5 148213200 148213241 -4324018 + GA-rich Low_complexity Low_complexity 2 42 0 5 1715 401 214 143 0 chr5 148213558 148213656 -4323603 + PB1D10 SINE Alu 1 112 -5 5 1715 1176 62 0 0 chr5 148213659 148213805 -4323454 + B1_Mm SINE Alu 2 147 0 5 1715 192 77 0 0 chr5 148213805 148213831 -4323428 + (A)n Simple_repeat Simple_repeat 1 26 0 5 1715 303 164 170 0 chr5 148213833 148213906 -4323353 + B4 SINE B4 1 77 -215 5 1715 621 225 179 44 chr5 148213950 148214224 -4323035 + RLTR15 LTR ERVK 33 343 -16 5 1715 383 225 268 9 chr5 148214262 148214374 -4322885 - B3A SINE B2 -48 150 10 5 1715 1176 61 0 20 chr5 148214374 148214524 -4322735 + B1_Mus1 SINE Alu 2 148 0 5 1715 1272 111 16 5 chr5 148214625 148214815 -4322444 - B2_Mm2 SINE B2 -1 194 3 5 1715 474 238 16 39 chr5 148214818 148214945 -4322314 + B4 SINE B4 104 227 -65 5 1715 571 271 65 103 chr5 148214946 148215160 -4322099 + B4A SINE B4 2 207 -85 5 1715 327 49 0 0 chr5 148215209 148215250 -4322009 + (CA)n Simple_repeat Simple_repeat 1 41 0 5 1715 226 226 321 0 chr5 148215329 148215413 -4321846 + B4 SINE B4 2 112 -180 5 1715 592 281 31 0 chr5 148215924 148216052 -4321207 + ID_B1 SINE B4 83 214 -10 5 1715 186 43 0 0 chr5 148216053 148216076 -4321183 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 5 1715 2584 117 65 10 chr5 148216076 148216474 -4320785 + MTC LTR MaLR 2 421 0 5 1715 322 176 120 76 chr5 148216514 148216606 -4320653 + B3 SINE B2 110 205 -11 5 1715 24 0 0 0 chr5 148216633 148216657 -4320602 + AT_rich Low_complexity Low_complexity 1 24 0 5 1715 353 171 0 54 chr5 148216692 148216766 -4320493 + B4 SINE B4 222 291 -1 5 1715 316 227 15 0 chr5 148216850 148216916 -4320343 - U6 snRNA snRNA -37 70 4 5 1715 1233 101 0 0 chr5 148216971 148217150 -4320109 + (TG)n Simple_repeat Simple_repeat 1 179 0 5 1715 633 119 0 0 chr5 148217161 148217262 -4319997 + (TG)n Simple_repeat Simple_repeat 1 101 0 5 1715 499 285 168 26 chr5 148217265 148217420 -4319839 - B3A SINE B2 -17 181 5 5 1715 315 104 0 0 chr5 148217432 148217480 -4319779 + (TTA)n Simple_repeat Simple_repeat 2 49 0 5 1715 24 0 0 0 chr5 148218271 148218295 -4318964 + AT_rich Low_complexity Low_complexity 1 24 0 5 1715 256 253 182 11 chr5 148218419 148218507 -4318752 - ORR1E LTR MaLR -224 135 33 5 1715 589 182 26 26 chr5 148218529 148218642 -4318617 - PB1D10 SINE Alu 0 117 5 5 1715 235 287 35 40 chr5 148218741 148218861 -4318398 - MLT1F LTR MaLR -16 664 489 5 1715 225 119 0 0 chr5 148219293 148219335 -4317924 + (T)n Simple_repeat Simple_repeat 1 42 0 5 1715 1326 77 43 11 chr5 148219368 148219552 -4317707 - B2_Mm2 SINE B2 -4 191 2 5 1715 614 226 28 28 chr5 148219636 148219777 -4317482 + B1_Mur1 SINE Alu 5 145 -4 6 1715 213 121 0 0 chr5 148219816 148219849 -4317410 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1715 1190 43 0 7 chr5 148219858 148220000 -4317259 - B1_Mus2 SINE Alu -6 141 1 6 1715 232 208 21 0 chr5 148220000 148220048 -4317211 - Charlie5 DNA MER1_type -343 2281 2233 6 1715 582 242 148 22 chr5 148220181 148220363 -4316896 + B3 SINE B2 2 206 -10 6 1715 180 77 0 0 chr5 148221177 148221203 -4316056 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1715 24 53 0 0 chr5 148221240 148221278 -4315981 + AT_rich Low_complexity Low_complexity 1 38 0 6 1715 910 141 0 27 chr5 148221305 148221451 -4315808 + B1_Mur4 SINE Alu 9 150 0 6 1715 1814 158 5 107 chr5 148222118 148222501 -4314758 - ORR1B1 LTR MaLR -10 384 41 6 1715 267 298 116 62 chr5 148222942 148223094 -4314165 - L1MEg LINE L1 -3747 2100 1949 6 1715 1233 137 101 14 chr5 148223094 148223302 -4313957 + URR1A DNA MER1_type 1 226 0 6 1715 306 198 79 73 chr5 148223302 148223428 -4313831 - L1MEg LINE L1 -3899 1948 1805 6 1715 743 30 40 0 chr5 148223442 148223542 -4313717 + B1_Mus1 SINE Alu 36 139 -9 6 1715 207 0 0 0 chr5 148223542 148223565 -4313694 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6 1715 349 236 25 73 chr5 148223581 148223758 -4313501 - L1_Mur1 LINE L1 -4092 1755 1599 6 1715 1082 115 0 0 chr5 148223758 148223906 -4313353 - B1_Mur4 SINE Alu 0 150 3 6 1715 328 298 11 100 chr5 148223906 148224002 -4313257 - L1_Mur1 LINE L1 -4282 1598 1497 6 1715 744 277 44 15 chr5 148224060 148224265 -4312994 - B3 SINE B2 -4 212 2 6 1715 1839 141 62 3 chr5 148224436 148224727 -4312532 - RLTR10E LTR ERVK -3 308 1 6 1715 1474 79 16 0 chr5 148225080 148225270 -4311989 - B2_Mm2 SINE B2 -2 193 1 6 1715 1174 55 0 20 chr5 148225302 148225451 -4311808 + B1_Mm SINE Alu 2 147 0 6 1715 488 267 16 32 chr5 148225493 148225617 -4311642 + RSINE1 SINE B4 32 153 -12 6 1715 345 62 0 0 chr5 148225620 148225668 -4311591 + (CA)n Simple_repeat Simple_repeat 2 49 0 6 1715 208 135 0 0 chr5 148225854 148225891 -4311368 + (G)n Simple_repeat Simple_repeat 1 37 0 6 1715 522 129 171 38 chr5 148226563 148226668 -4310591 - PB1D9 SINE Alu -1 119 1 6 1715 447 255 0 0 chr5 148226671 148226777 -4310482 + ID_B1 SINE B4 109 214 -10 6 1715 351 137 0 0 chr5 148227288 148227361 -4309898 + (TC)n Simple_repeat Simple_repeat 1 73 0 6 1715 500 315 40 40 chr5 148227379 148227726 -4309533 + L1M2 LINE L1 3407 3753 -2390 6 1715 1151 75 0 0 chr5 148227742 148227889 -4309370 + B1_Mm SINE Alu 1 147 0 6 1715 222 118 0 0 chr5 148227889 148227923 -4309336 + (A)n Simple_repeat Simple_repeat 1 34 0 6 1715 444 200 178 70 chr5 148227970 148228099 -4309160 + B1_Mur4 SINE Alu 2 144 -6 6 1715 303 246 89 63 chr5 148228125 148228316 -4308943 + L1M2 LINE L1 3761 3956 -2184 6 1715 633 191 85 0 chr5 148228343 148228484 -4308775 - MTD LTR MaLR 0 419 267 6 1715 1251 237 104 11 chr5 148228468 148228843 -4308416 + RMER16 LTR ERVK 124 533 0 6 1715 560 261 120 19 chr5 148228844 148229102 -4308157 + L1M2 LINE L1 4117 4400 -1743 6 1715 454 257 8 163 chr5 148229117 148229368 -4307891 + ID_B1 SINE B4 13 224 0 6 1715 709 152 0 15 chr5 148229236 148229370 -4307889 + B1_Mur3 SINE Alu 18 149 0 6 1715 298 232 121 0 chr5 148229381 148229480 -4307779 + L1M2 LINE L1 4417 4527 -1613 6 1715 517 265 170 47 chr5 148229496 148229837 -4307422 + L1M2 LINE L1 4624 5006 -1137 6 1715 459 0 0 0 chr5 148229880 148229931 -4307328 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1715 459 0 0 0 chr5 148229981 148230032 -4307227 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1715 983 219 104 55 chr5 148230040 148230349 -4306910 + ORR1E LTR MaLR 31 354 -5 6 1715 264 239 62 27 chr5 148230738 148230850 -4306409 + L1_Mur2 LINE L1 5004 5119 -767 6 1715 1147 35 35 0 chr5 148230936 148231078 -4306181 - B1_Mus2 SINE Alu 0 147 1 6 1715 617 267 19 6 chr5 148231190 148231352 -4305907 - B3A SINE B2 -34 164 1 6 1715 182 37 37 0 chr5 148231367 148231394 -4305865 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 6 1715 278 262 144 26 chr5 148231395 148231548 -4305711 - L1M5 LINE L1 -2205 3941 3771 6 1715 292 336 39 8 chr5 148231584 148231713 -4305546 - B1F SINE Alu -11 138 6 6 1715 1112 95 0 0 chr5 148231908 148232056 -4305203 - B1_Mus1 SINE Alu 0 148 1 6 1715 240 241 92 9 chr5 148232076 148232185 -4305074 - L1M5 LINE L1 -3160 2986 2869 6 1715 471 189 70 26 chr5 148232187 148232301 -4304958 - B1_Mur1 SINE Alu 0 149 31 6 1715 303 338 80 42 chr5 148232192 148232405 -4304854 - ID_B1 SINE B4 -2 222 2 6 1715 801 214 96 5 chr5 148232432 148232620 -4304639 - B3 SINE B2 -7 209 5 6 1715 602 284 30 0 chr5 148233598 148233767 -4303492 + B3A SINE B2 1 174 -24 6 1715 1915 239 50 16 chr5 148233834 148234331 -4302928 + Lx8 LINE L1 6333 6846 -627 6 1715 2379 84 19 0 chr5 148234353 148234673 -4302586 + ORR1A2 LTR MaLR 2 327 0 6 1715 265 325 90 67 chr5 148234750 148234928 -4302331 + Lx8 LINE L1 6995 7176 -297 6 1715 1132 235 90 41 chr5 148234966 148235501 -4301758 + RLTR26 LTR ERVK 5 606 -36 6 1715 1214 48 0 0 chr5 148235736 148235883 -4301376 + B1_Mus2 SINE Alu 1 147 0 6 1715 180 77 0 0 chr5 148235936 148235962 -4301297 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 6 1715 1079 55 7 27 chr5 148236054 148236203 -4301056 - B1_Mus2 SINE Alu 0 147 2 6 1715 1789 133 115 0 chr5 148236519 148236841 -4300418 + ORR1B2 LTR MaLR 1 359 -8 6 1715 917 228 161 16 chr5 148237228 148237544 -4299715 + MTD LTR MaLR 44 405 -14 6 1715 802 152 30 8 chr5 148237554 148237687 -4299572 + B1_Mur4 SINE Alu 2 137 -13 6 1715 198 0 0 0 chr5 148237688 148237710 -4299549 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 6 1715 915 269 27 47 chr5 148239316 148239613 -4297646 - B4 SINE B4 0 292 2 6 1715 1676 26 0 10 chr5 148239941 148240135 -4297124 - B2_Mm1a SINE B2 0 193 2 6 1715 198 322 10 72 chr5 148240666 148240763 -4296496 + L2c LINE L2 3289 3379 -8 6 1715 204 67 0 0 chr5 148241390 148241420 -4295839 + (A)n Simple_repeat Simple_repeat 1 30 0 6 1715 26 50 0 0 chr5 148241928 148241968 -4295291 + GC_rich Low_complexity Low_complexity 1 40 0 6 1715 211 162 0 39 chr5 148242223 148242300 -4294959 + (CGG)n Simple_repeat Simple_repeat 2 75 0 6 1715 22 0 0 0 chr5 148242386 148242408 -4294851 + GC_rich Low_complexity Low_complexity 1 22 0 6 1716 21 0 0 0 chr5 148242443 148242464 -4294795 + GC_rich Low_complexity Low_complexity 1 21 0 6 1716 27 29 0 0 chr5 148242481 148242515 -4294744 + GC_rich Low_complexity Low_complexity 1 34 0 6 1716 211 164 31 47 chr5 148242821 148242885 -4294374 + (GGGTG)n Simple_repeat Simple_repeat 5 67 0 6 1716 282 160 0 0 chr5 148242911 148242961 -4294298 + (TG)n Simple_repeat Simple_repeat 1 50 0 6 1716 327 49 0 0 chr5 148243549 148243590 -4293669 + (T)n Simple_repeat Simple_repeat 1 41 0 6 1716 312 91 0 0 chr5 148243690 148243734 -4293525 + (TG)n Simple_repeat Simple_repeat 2 45 0 6 1716 376 269 52 44 chr5 148243742 148243878 -4293381 - RSINE1 SINE B4 -11 154 18 6 1716 395 177 167 0 chr5 148243926 148244022 -4293237 - PB1D7 SINE Alu -6 114 3 6 1716 1130 241 159 8 chr5 148244120 148244484 -4292775 - MTD LTR MaLR 0 419 1 6 1716 595 197 17 0 chr5 148245009 148245126 -4292133 - PB1D9 SINE Alu 0 120 2 6 1716 1145 61 0 39 chr5 148245275 148245428 -4291831 + B1_Mm SINE Alu 1 147 0 6 1716 512 237 70 0 chr5 148245792 148245906 -4291353 + RSINE1 SINE B4 2 123 -42 6 1716 483 160 30 10 chr5 148245986 148246087 -4291172 + ID_B1 SINE B4 103 205 -19 6 1716 253 152 388 12 chr5 148246175 148246255 -4291004 - B1_Mur3 SINE Alu -38 111 2 6 1716 469 312 176 33 chr5 148246355 148246657 -4290602 - MLT-int LTR MaLR 0 1735 1391 6 1716 1368 270 136 44 chr5 148247243 148247657 -4289602 - Lx8 LINE L1 0 7473 7008 6 1716 1371 58 20 55 chr5 148247657 148247857 -4289402 - B2_Mm1a SINE B2 0 193 1 6 1716 1368 270 136 44 chr5 148247857 148248039 -4289220 - Lx8 LINE L1 -466 7007 6822 6 1716 269 330 103 20 chr5 148248076 148248271 -4288988 - MLT-int LTR MaLR -1124 611 401 6 1716 293 273 171 29 chr5 148248499 148248669 -4288590 + B3A SINE B2 2 195 -3 6 1716 235 125 40 40 chr5 148248719 148248769 -4288490 - L1M5 LINE L1 -533 5640 5591 6 1716 438 207 351 6 chr5 148249684 148249846 -4287413 - B4A SINE B4 -73 219 2 6 1716 259 254 121 68 chr5 148250296 148250486 -4286773 - ID_B1 SINE B4 -24 200 1 6 1716 255 113 51 102 chr5 148250653 148250712 -4286547 - PB1D7 SINE Alu 0 120 65 6 1716 867 232 39 10 chr5 148250659 148250864 -4286395 - ID_B1 SINE B4 0 224 14 6 1716 776 271 84 24 chr5 148252050 148252300 -4284959 - MTE2b LTR MaLR -71 308 44 6 1716 238 224 51 17 chr5 148252320 148252379 -4284880 + ID4_ SINE ID 7 67 -16 6 1716 333 222 0 0 chr5 148252462 148252525 -4284734 - B1_Mur2 SINE Alu -5 144 82 6 1716 656 159 67 80 chr5 148252604 148252754 -4284505 - B1_Mus1 SINE Alu 0 148 1 6 1716 697 284 35 31 chr5 148252780 148253036 -4284223 - MTE2b LTR MaLR -2 377 121 6 1716 307 255 162 130 chr5 148253036 148253221 -4284038 + B3A SINE B2 1 191 -7 6 1716 444 259 210 25 chr5 148254315 148254334 -4282925 - MLT-int LTR MaLR -15 1720 1704 6 1716 261 0 0 0 chr5 148254334 148254363 -4282896 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 6 1716 444 259 210 25 chr5 148254363 148254581 -4282678 - MLT-int LTR MaLR -32 1703 1440 6 1716 357 378 183 26 chr5 148254627 148255055 -4282204 - MLT-int LTR MaLR -376 1359 865 6 1716 1141 36 0 42 chr5 148255099 148255243 -4282016 + B1_Mus1 SINE Alu 2 139 -9 6 1716 183 42 0 0 chr5 148255254 148255278 -4281981 + (A)n Simple_repeat Simple_repeat 1 24 0 6 1716 375 290 18 36 chr5 148255346 148255457 -4281802 - MLT-int LTR MaLR -932 803 695 6 1716 482 303 76 13 chr5 148255498 148255722 -4281537 - MLT-int LTR MaLR -1162 573 336 6 1716 325 222 0 132 chr5 148255760 148255874 -4281385 - PB1D10 SINE Alu -8 109 11 6 1716 404 277 2 3 chr5 148255964 148256082 -4281177 - B3A SINE B2 -76 119 3 6 1716 1682 16 5 5 chr5 148256224 148256416 -4280843 - B2_Mm1a SINE B2 0 193 2 6 1716 363 268 10 0 chr5 148256476 148256573 -4280686 - MLT1A1 LTR MaLR -54 354 257 6 1716 23 0 0 0 chr5 148257213 148257236 -4280023 + AT_rich Low_complexity Low_complexity 1 23 0 7 1716 1363 84 10 10 chr5 148257538 148257730 -4279529 - B2_Mm1t SINE B2 0 193 2 7 1716 676 261 132 5 chr5 148257730 148257919 -4279340 - B3 SINE B2 -2 214 2 7 1716 824 130 0 68 chr5 148258027 148258175 -4279084 + B1_Mus1 SINE Alu 11 148 0 7 1716 347 289 14 62 chr5 148258647 148258791 -4278468 - MER21B LTR ERV1 -221 642 506 7 1716 2305 195 9 59 chr5 148258892 148259421 -4277838 - RLTR18B LTR ERVK -4 508 6 7 1716 183 80 0 0 chr5 148259724 148259749 -4277510 + (CTAGG)n Simple_repeat Simple_repeat 1 25 0 7 1716 284 0 28 0 chr5 148260103 148260139 -4277120 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 7 1716 403 221 155 15 chr5 148260704 148260828 -4276431 - B1F SINE Alu -22 127 1 7 1716 341 296 47 23 chr5 148260850 148260978 -4276281 - B1F1 SINE Alu -16 133 3 7 1716 594 265 9 67 chr5 148261144 148261354 -4275905 - ID_B1 SINE B4 -23 201 4 7 1716 288 0 0 0 chr5 148261573 148261605 -4275654 + (GGGTG)n Simple_repeat Simple_repeat 1 32 0 7 1716 837 177 0 7 chr5 148261856 148261998 -4275261 + B1_Mus1 SINE Alu 3 143 -5 7 1716 693 0 0 0 chr5 148262762 148262839 -4274420 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 7 1716 1106 96 0 0 chr5 148262840 148262997 -4274262 - B2_Mm2 SINE B2 -37 158 2 7 1716 1438 78 5 20 chr5 148263318 148263514 -4273745 - B2_Mm1a SINE B2 0 193 1 7 1716 691 296 72 32 chr5 148263672 148263951 -4273308 - B4A SINE B4 -1 291 2 7 1716 22 0 0 0 chr5 148263959 148263981 -4273278 + AT_rich Low_complexity Low_complexity 1 22 0 7 1716 283 279 0 48 chr5 148264003 148264086 -4273173 - ID_B1 SINE B4 -7 217 139 7 1716 222 351 59 52 chr5 148264086 148264138 -4273121 - B1F1 SINE Alu -7 142 7 7 1716 1100 82 0 33 chr5 148265136 148265287 -4271972 - B1_Mus2 SINE Alu 0 147 2 7 1716 708 186 28 21 chr5 148265551 148265694 -4271565 + B1_Mus1 SINE Alu 4 147 -1 7 1716 416 217 34 31 chr5 148266906 148267028 -4270231 - PB1D10 SINE Alu -23 124 9 7 1716 1114 49 14 20 chr5 148267204 148267350 -4269909 - B1_Mus2 SINE Alu -1 146 2 7 1716 1367 55 37 21 chr5 148267360 148267547 -4269712 - B2_Mm2 SINE B2 -5 190 1 7 1716 386 269 32 0 chr5 148267747 148267840 -4269419 - PB1D10 SINE Alu -15 102 7 7 1716 250 283 18 92 chr5 148267754 148267863 -4269396 - MT2B LTR ERVL -350 251 151 7 1716 200 114 68 0 chr5 148268906 148268950 -4268309 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 7 1716 212 0 36 0 chr5 148269115 148269143 -4268116 + (TA)n Simple_repeat Simple_repeat 2 30 0 7 1716 1153 74 0 0 chr5 148269146 148269294 -4267965 - B1_Mus1 SINE Alu 0 148 1 7 1716 24 0 0 0 chr5 148269636 148269660 -4267599 + AT_rich Low_complexity Low_complexity 1 24 0 7 1716 242 311 44 0 chr5 148270214 148270304 -4266955 + MER5C1 DNA MER1_type 97 190 -73 7 1716 216 111 0 45 chr5 148270547 148270613 -4266646 + T-rich Low_complexity Low_complexity 4 66 0 7 1716 1180 75 0 0 chr5 148270627 148270774 -4266485 - B1_Mus2 SINE Alu 0 147 1 7 1716 325 255 113 0 chr5 148271605 148271711 -4265548 - B1_Mus1 SINE Alu -13 135 18 7 1716 333 0 0 0 chr5 148271804 148271841 -4265418 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1716 432 0 0 0 chr5 148271841 148271888 -4265371 + (GA)n Simple_repeat Simple_repeat 1 48 0 7 1716 342 270 265 39 chr5 148272622 148272803 -4264456 + ID_B1 SINE B4 3 224 0 7 1716 297 278 0 82 chr5 148272917 148273015 -4264244 + B1F SINE Alu 4 93 -56 7 1716 332 224 66 0 chr5 148273721 148273797 -4263462 + ID_B1 SINE B4 134 214 -10 7 1716 260 188 16 0 chr5 148275819 148275883 -4261376 + CT-rich Low_complexity Low_complexity 2 66 0 7 1716 215 100 0 0 chr5 148275887 148275917 -4261342 - PB1D9 SINE Alu -13 107 78 7 1716 183 80 0 0 chr5 148276182 148276207 -4261052 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 7 1716 216 0 0 0 chr5 148276240 148276264 -4260995 + (TA)n Simple_repeat Simple_repeat 1 24 0 7 1716 381 43 0 0 chr5 148276264 148276310 -4260949 + (CA)n Simple_repeat Simple_repeat 2 48 0 7 1716 261 119 0 0 chr5 148276310 148276351 -4260908 + (TATG)n Simple_repeat Simple_repeat 2 43 0 7 1716 773 238 95 0 chr5 148276422 148276611 -4260648 - B3 SINE B2 -3 213 7 7 1716 918 224 0 20 chr5 148277157 148277353 -4259906 - B3 SINE B2 -24 192 1 7 1716 259 351 0 35 chr5 148277360 148277475 -4259784 - PB1D10 SINE Alu -5 112 2 7 1716 261 0 0 0 chr5 148277642 148277671 -4259588 + (CA)n Simple_repeat Simple_repeat 2 30 0 7 1716 733 162 49 7 chr5 148278840 148278983 -4258276 - B1_Mur3 SINE Alu 0 149 1 7 1716 267 103 0 0 chr5 148279006 148279045 -4258214 + (TCC)n Simple_repeat Simple_repeat 3 41 0 7 1716 513 283 122 14 chr5 148279132 148279279 -4257980 - RSINE1 SINE B4 0 165 3 7 1716 434 250 26 79 chr5 148279350 148279392 -4257867 - ID_B1 SINE B4 -3 221 110 7 1716 725 110 0 0 chr5 148279392 148279492 -4257767 - B1_Mur4 SINE Alu -42 108 9 7 1716 303 214 18 0 chr5 148280177 148280233 -4257026 + B3A SINE B2 78 134 -64 7 1716 225 0 0 0 chr5 148280233 148280258 -4257001 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 7 1716 306 0 0 0 chr5 148280564 148280598 -4256661 + (TCCTG)n Simple_repeat Simple_repeat 1 34 0 7 1716 534 31 0 0 chr5 148280600 148280664 -4256595 + (TTTTC)n Simple_repeat Simple_repeat 3 66 0 7 1716 28 29 0 0 chr5 148280816 148280851 -4256408 + AT_rich Low_complexity Low_complexity 1 35 0 7 1716 217 300 40 54 chr5 148281482 148281556 -4255703 - B3A SINE B2 -125 73 1 7 1716 900 211 20 5 chr5 148281570 148281765 -4255494 - B3 SINE B2 -14 202 5 7 1716 548 45 34 11 chr5 148282097 148282186 -4255073 + (TC)n Simple_repeat Simple_repeat 2 92 0 7 1716 905 183 147 0 chr5 148282601 148282798 -4254461 + URR1A DNA MER1_type 1 226 0 7 1716 280 257 14 28 chr5 148283072 148283144 -4254115 - B1_Mus1 SINE Alu -77 71 1 7 1716 1197 41 7 0 chr5 148283601 148283747 -4253512 - B1_Mm SINE Alu 0 147 1 7 1716 222 108 0 75 chr5 148283804 148283844 -4253415 - B3 SINE B2 -177 39 3 7 1716 423 300 94 84 chr5 148284761 148285070 -4252189 + RLTR25B LTR ERVK 1 312 -716 7 1716 343 286 88 54 chr5 148285828 148286021 -4251238 + RLTR25B LTR ERVK 859 1103 0 7 1716 1000 262 84 56 chr5 148286923 148287246 -4250013 - ORR1E LTR MaLR 0 359 28 7 1716 975 195 74 23 chr5 148287248 148287463 -4249796 + URR1A DNA MER1_type 1 226 0 7 1716 1531 211 82 70 chr5 148287498 148287910 -4249349 - ORR1E-int LTR MaLR -1 1369 953 7 1716 1123 53 0 0 chr5 148287975 148288107 -4249152 + B1_Mus1 SINE Alu 3 134 -14 7 1716 1527 67 0 5 chr5 148288146 148288342 -4248917 + B2_Mm2 SINE B2 1 195 0 7 1716 180 125 0 0 chr5 148288342 148288374 -4248885 + (GAAAA)n Simple_repeat Simple_repeat 5 36 0 7 1716 254 284 12 36 chr5 148288466 148288550 -4248709 + ORR1D-int LTR MaLR 363 444 -926 7 1716 476 241 52 8 chr5 148290517 148290651 -4246608 + RMER1A Other Other 47 186 -844 7 1716 285 29 0 0 chr5 148290651 148290685 -4246574 + (TG)n Simple_repeat Simple_repeat 1 34 0 7 1716 3982 205 55 54 chr5 148290713 148291729 -4245530 + RMER1A Other Other 1 1017 -13 7 1716 589 252 7 28 chr5 148292114 148292257 -4245002 - B1_Mur2 SINE Alu -9 140 1 7 1716 256 271 10 20 chr5 148292356 148292454 -4244805 + L1MC4a LINE L1 7684 7780 -102 7 1716 311 146 260 10 chr5 148292877 148292981 -4244278 + L1MEc LINE L1 1909 2038 -4362 7 1716 669 269 100 123 chr5 148293025 148293180 -4244079 + MLT1B LTR MaLR 1 145 -245 7 1716 180 0 0 0 chr5 148293180 148293200 -4244059 + (TTAG)n Simple_repeat Simple_repeat 3 22 0 7 1716 669 269 100 123 chr5 148293200 148293443 -4243816 + MLT1B LTR MaLR 146 390 0 7 1716 460 79 16 0 chr5 148293581 148293644 -4243615 + (TCC)n Simple_repeat Simple_repeat 3 66 0 7 1716 779 40 16 70 chr5 148293644 148293831 -4243428 + (TTC)n Simple_repeat Simple_repeat 1 177 0 7 1716 1093 49 0 20 chr5 148293831 148293978 -4243281 - B1_Mus2 SINE Alu 0 147 4 7 1716 376 265 148 15 chr5 148294361 148294448 -4242811 + L1MEc LINE L1 2771 2856 -3463 7 1716 333 47 0 0 chr5 148294448 148294491 -4242768 + (TG)n Simple_repeat Simple_repeat 2 44 0 7 1716 376 265 148 15 chr5 148294491 148294606 -4242653 + L1MEc LINE L1 2857 2999 -3320 7 1716 320 303 124 88 chr5 148294619 148294869 -4242390 + L1MEc LINE L1 3064 3322 -2997 7 1716 676 259 47 7 chr5 148294883 148295031 -4242228 + B3A SINE B2 2 155 -43 7 1716 282 29 0 0 chr5 148295120 148295155 -4242104 + (CA)n Simple_repeat Simple_repeat 2 36 0 7 1716 239 232 118 35 chr5 148295254 148295339 -4241920 - B1_Mur2 SINE Alu -15 134 43 7 1716 207 0 0 0 chr5 148295381 148295404 -4241855 + (TATG)n Simple_repeat Simple_repeat 4 26 0 7 1716 725 153 37 37 chr5 148295404 148295540 -4241719 - B1_Mus1 SINE Alu -12 136 1 7 1716 22 56 0 0 chr5 148295640 148295676 -4241583 + AT_rich Low_complexity Low_complexity 1 36 0 7 1716 2272 287 136 39 chr5 148295822 148296794 -4240465 - Lx8 LINE L1 -207 7266 6196 7 1716 390 21 0 0 chr5 148296794 148296841 -4240418 + (TG)n Simple_repeat Simple_repeat 1 47 0 7 1716 306 0 0 0 chr5 148296842 148296876 -4240383 + (GA)n Simple_repeat Simple_repeat 1 34 0 7 1716 2272 283 103 32 chr5 148296876 148297304 -4239955 - Lx8 LINE L1 -1278 6195 5697 7 1716 624 317 56 26 chr5 148297745 148298011 -4239248 + B4A SINE B4 1 274 -18 7 1716 756 197 21 7 chr5 148298307 148298450 -4238809 - B1_Mus2 SINE Alu 0 147 3 7 1716 180 77 0 0 chr5 148298837 148298863 -4238396 + (TTAAG)n Simple_repeat Simple_repeat 3 28 0 7 1716 25 51 0 0 chr5 148298871 148298910 -4238349 + AT_rich Low_complexity Low_complexity 1 39 0 7 1716 207 0 0 0 chr5 148299893 148299916 -4237343 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7 1716 395 224 67 74 chr5 148300688 148300823 -4236436 - RMER30 DNA MER1_type -60 142 9 8 1716 308 297 9 8 chr5 148302083 148302192 -4235067 - BC1_Mm scRNA scRNA -45 107 2 8 1716 207 0 0 0 chr5 148306934 148306957 -4230302 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 8 1716 481 155 81 20 chr5 148306957 148307045 -4230214 - B1_Mm SINE Alu -13 134 40 8 1716 285 188 45 143 chr5 148307176 148307288 -4229971 - PB1D10 SINE Alu -15 102 2 8 1716 1051 126 17 28 chr5 148307288 148307467 -4229792 - B2_Mm2 SINE B2 -18 177 1 8 1716 584 264 14 0 chr5 148307686 148307834 -4229425 + RSINE1 SINE B4 3 152 -13 8 1716 237 326 82 0 chr5 148308058 148308156 -4229103 + PB1D7 SINE Alu 3 108 -12 8 1716 201 147 0 0 chr5 148308422 148308456 -4228803 + (TTC)n Simple_repeat Simple_repeat 3 36 0 8 1716 570 307 43 21 chr5 148308560 148308793 -4228466 + B4A SINE B4 55 292 0 8 1716 291 283 8 89 chr5 148309370 148309418 -4227841 + PB1D10 SINE Alu 3 48 -69 8 1716 2259 133 90 2 chr5 148309418 148309818 -4227441 - BGLII_B LTR ERVK -4 437 3 8 1716 291 283 8 89 chr5 148309818 148309893 -4227366 + PB1D10 SINE Alu 49 116 -1 8 1716 22 56 0 0 chr5 148310254 148310290 -4226969 + AT_rich Low_complexity Low_complexity 1 36 0 8 1716 433 327 131 51 chr5 148310522 148310714 -4226545 + Tigger7 DNA MER2_type 187 398 -2093 8 1716 1226 34 0 0 chr5 148310714 148310861 -4226398 + B1_Mus2 SINE Alu 1 147 0 8 1716 433 327 131 51 chr5 148310861 148311058 -4226201 + Tigger7 DNA MER2_type 399 607 -1884 8 1716 222 239 330 21 chr5 148311261 148311355 -4225904 + RSINE1 SINE B4 6 128 -37 8 1716 270 0 0 0 chr5 148311433 148311463 -4225796 + (TCTG)n Simple_repeat Simple_repeat 4 33 0 8 1716 766 144 55 23 chr5 148311466 148311594 -4225665 - B1_Mur4 SINE Alu -13 137 6 8 1716 344 279 32 103 chr5 148311594 148311622 -4225637 - ID_B1 SINE B4 -13 211 67 8 1716 452 172 86 0 chr5 148311621 148311714 -4225545 + PB1D9 SINE Alu 12 112 -8 8 1716 347 330 70 21 chr5 148312003 148312189 -4225070 - HAL1-3A_ME LINE L1 -404 2454 2260 8 1716 930 256 0 0 chr5 148313614 148313790 -4223469 + B3 SINE B2 9 184 -32 8 1716 31 26 0 0 chr5 148314534 148314572 -4222687 + AT_rich Low_complexity Low_complexity 1 38 0 8 1716 545 190 357 38 chr5 148315893 148316050 -4221209 + B3 SINE B2 1 207 -9 8 1716 231 316 21 0 chr5 148317073 148317168 -4220091 + B1F SINE Alu 48 144 -5 8 1716 375 254 142 98 chr5 148317413 148317596 -4219663 - B3A SINE B2 -2 196 6 8 1716 629 157 67 101 chr5 148317764 148317913 -4219346 + B1_Mur4 SINE Alu 6 149 -1 8 1716 308 342 195 15 chr5 148318079 148318485 -4218774 + MER68 LTR ERVL 24 502 -61 8 1716 1090 89 0 7 chr5 148319187 148319334 -4217925 + B1_Mm SINE Alu 2 147 0 8 1716 272 137 20 0 chr5 148319334 148319385 -4217874 + GA-rich Low_complexity Low_complexity 2 53 0 8 1716 285 303 0 73 chr5 148319696 148319792 -4217467 - RSINE1 SINE B4 -75 90 2 8 1716 568 281 155 6 chr5 148319800 148319968 -4217291 + B4A SINE B4 40 232 -60 8 1716 663 266 26 13 chr5 148319972 148320128 -4217131 + B3A SINE B2 11 168 -30 8 1716 333 0 0 0 chr5 148320360 148320397 -4216862 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1716 426 250 50 0 chr5 148320432 148320572 -4216687 - B1_Mur2 SINE Alu -1 148 2 8 1716 1063 96 7 0 chr5 148320665 148320811 -4216448 - B1_Mus2 SINE Alu 0 147 1 8 1716 708 264 22 11 chr5 148321099 148321279 -4215980 - B3 SINE B2 -32 184 3 8 1716 907 174 0 70 chr5 148321371 148321556 -4215703 - B3 SINE B2 -9 207 36 8 1716 710 211 81 13 chr5 148321656 148321805 -4215454 + B3 SINE B2 1 159 -57 8 1716 22 0 0 0 chr5 148321921 148321943 -4215316 + AT_rich Low_complexity Low_complexity 1 22 0 8 1716 675 252 58 51 chr5 148322528 148322834 -4214425 - L1M4 LINE L1 -397 5781 5475 8 1716 228 284 47 47 chr5 148323266 148323351 -4213908 - B1F2 SINE Alu -63 86 2 8 1716 316 256 43 22 chr5 148323888 148323980 -4213279 - PB1D10 SINE Alu -7 110 17 8 1716 7098 162 88 42 chr5 148323982 148325040 -4212219 + MurERV4-int LTR ERVK 1607 2697 -2563 8 1716 243 0 0 0 chr5 148325040 148325067 -4212192 + (CCAA)n Simple_repeat Simple_repeat 4 30 0 8 1716 7098 162 88 42 chr5 148325067 148325614 -4211645 + MurERV4-int LTR ERVK 2698 3286 -1974 8 1716 7616 184 66 13 chr5 148325613 148327292 -4209967 + MurERV4-int LTR ERVK 3491 5258 -2 8 1716 2492 159 15 44 chr5 148327308 148327783 -4209476 + RMER4A LTR ERVK 6 466 0 8 1716 216 0 0 0 chr5 148327975 148327999 -4209260 + (TA)n Simple_repeat Simple_repeat 1 24 0 8 1716 216 0 0 0 chr5 148328105 148328129 -4209130 + (GCCTG)n Simple_repeat Simple_repeat 2 25 0 8 1716 558 252 16 8 chr5 148328154 148328282 -4208977 - B1_Mur4 SINE Alu -6 144 16 8 1716 235 277 57 97 chr5 148328193 148328317 -4208942 - MT2B LTR ERVL -344 257 139 8 1716 285 114 400 9 chr5 148328790 148328895 -4208364 - B2_Mm2 SINE B2 -3 192 47 8 1716 1226 79 6 0 chr5 148328964 148329129 -4208130 - B2_Mm1t SINE B2 -26 167 2 8 1716 233 329 49 0 chr5 148329262 148329344 -4207915 + MIRb SINE MIR 118 203 -65 8 1716 213 132 0 0 chr5 148329666 148329704 -4207555 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1716 483 279 54 7 chr5 148333773 148333921 -4203338 - RSINE1 SINE B4 0 165 11 8 1716 1022 49 0 21 chr5 148334349 148334494 -4202765 - B1_Mur4 SINE Alu 0 150 9 8 1716 249 180 0 0 chr5 148334503 148334553 -4202706 + (TTA)n Simple_repeat Simple_repeat 2 51 0 8 1716 26 50 0 0 chr5 148334635 148334675 -4202584 + AT_rich Low_complexity Low_complexity 1 40 0 8 1716 581 139 52 9 chr5 148334833 148334949 -4202310 + B1_Mur3 SINE Alu 29 149 0 8 1716 470 104 0 0 chr5 148334998 148335075 -4202184 - L1_Mus2 LINE L1 0 6566 6490 8 1716 1331 111 0 0 chr5 148335396 148335586 -4201673 + B2_Mm2 SINE B2 2 191 -4 8 1716 231 36 0 0 chr5 148336314 148336342 -4200917 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1716 1098 23 45 0 chr5 148336358 148336491 -4200768 - B1_Mus1 SINE Alu -9 139 1 8 1716 297 130 145 0 chr5 148336500 148336569 -4200690 - PB1D9 SINE Alu 0 120 42 8 1716 230 376 52 22 chr5 148336725 148336861 -4200398 + MER20 DNA MER1_type 24 163 -56 8 1716 266 276 41 0 chr5 148337094 148337192 -4200067 + L1M2 LINE L1 3924 4025 -2118 8 1716 27 81 0 0 chr5 148337778 148337840 -4199419 + AT_rich Low_complexity Low_complexity 1 62 0 8 1716 279 289 107 12 chr5 148340239 148340323 -4196936 + PB1D7 SINE Alu 27 118 -2 8 1716 665 219 20 27 chr5 148340339 148340489 -4196770 + B1_Mur2 SINE Alu 1 149 0 8 1716 670 0 0 34 chr5 148340831 148340919 -4196340 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 8 1716 254 308 73 18 chr5 148340921 148341030 -4196229 - PB1D9 SINE Alu -5 115 1 8 1716 473 0 18 0 chr5 148341759 148341816 -4195443 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1716 453 232 74 0 chr5 148341816 148341911 -4195348 - B3 SINE B2 -28 188 87 8 1716 191 314 126 11 chr5 148342027 148342114 -4195145 - MER5A DNA MER1_type -56 133 37 8 1716 507 33 0 0 chr5 148342318 148342379 -4194880 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1716 225 279 20 61 chr5 148343241 148343340 -4193919 + BC1_Mm scRNA scRNA 6 100 -52 8 1716 36 0 0 0 chr5 148344523 148344559 -4192700 + AT_rich Low_complexity Low_complexity 1 36 0 8 1716 464 110 0 14 chr5 148345930 148346004 -4191255 + B2_Mm1a SINE B2 74 146 -47 8 1716 324 0 0 0 chr5 148346086 148346122 -4191137 + (T)n Simple_repeat Simple_repeat 1 36 0 8 1716 1143 75 0 0 chr5 148346122 148346269 -4190990 - B1_Mm SINE Alu 0 147 1 8 1716 230 0 33 0 chr5 148346510 148346540 -4190719 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1716 761 26 250 42 chr5 148346540 148346606 -4190653 - B1_Mm SINE Alu -2 145 53 8 1716 1450 49 54 0 chr5 148346606 148346791 -4190468 + B2_Mm2 SINE B2 1 195 0 8 1716 761 26 250 42 chr5 148346791 148346844 -4190415 - B1_Mm SINE Alu -95 52 1 8 1716 1089 185 101 10 chr5 148346884 148347091 -4190168 + URR1A DNA MER1_type 1 226 0 8 1716 225 336 26 80 chr5 148347452 148347565 -4189694 + RSINE1 SINE B4 11 117 -48 8 1716 332 111 16 0 chr5 148347818 148347881 -4189378 + (TC)n Simple_repeat Simple_repeat 1 64 0 8 1716 282 217 142 42 chr5 148349316 148349436 -4187823 - MIRb SINE MIR -56 212 81 8 1716 626 160 45 38 chr5 148349549 148349726 -4187533 + B3 SINE B2 1 193 -2 8 1716 537 263 50 28 chr5 148349816 148349996 -4187263 + B3A SINE B2 3 186 -12 8 1716 272 232 0 18 chr5 148350381 148350438 -4186821 + PB1 SINE Alu 67 122 -5 8 1716 757 205 122 16 chr5 148351957 148352145 -4185114 - B3 SINE B2 -7 209 2 8 1716 21 71 0 0 chr5 148352790 148352832 -4184427 + AT_rich Low_complexity Low_complexity 1 42 0 8 1716 22 35 0 0 chr5 148352843 148352872 -4184387 + AT_rich Low_complexity Low_complexity 1 29 0 8 1716 21 36 0 0 chr5 148352963 148352991 -4184268 + AT_rich Low_complexity Low_complexity 1 28 0 8 1716 1395 81 11 0 chr5 148353067 148353253 -4184006 - B2_Mm1t SINE B2 -5 188 1 8 1716 781 54 36 0 chr5 148353589 148353700 -4183559 + B1_Mus1 SINE Alu 30 144 -4 8 1716 591 102 0 0 chr5 148354826 148354914 -4182345 + (TG)n Simple_repeat Simple_repeat 1 88 0 8 1716 298 203 17 0 chr5 148355165 148355224 -4182035 + PB1D9 SINE Alu 3 62 -58 8 1716 856 166 197 56 chr5 148355228 148355426 -4181833 - URR1A DNA MER1_type 0 226 1 8 1716 224 218 18 18 chr5 148355607 148355663 -4181596 + RSINE1 SINE B4 82 137 -28 8 1716 740 143 15 8 chr5 148356541 148356675 -4180584 + B1_Mus2 SINE Alu 11 145 -2 8 1716 244 48 0 45 chr5 148358135 148358179 -4179080 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 9 1716 333 131 0 0 chr5 148359585 148359646 -4177613 + (T)n Simple_repeat Simple_repeat 1 61 0 9 1716 180 0 0 0 chr5 148360531 148360551 -4176708 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 9 1716 180 0 0 0 chr5 148361042 148361062 -4176197 + (A)n Simple_repeat Simple_repeat 1 20 0 9 1716 274 327 93 39 chr5 148361816 148362074 -4175185 - L2 LINE L2 -533 2886 2615 9 1716 297 287 120 0 chr5 148362224 148362357 -4174902 - MLT1G3 LTR MaLR -38 557 403 9 1716 450 263 59 0 chr5 148362746 148362864 -4174395 - B2_Mm2 SINE B2 -70 125 1 9 1716 1652 171 28 86 chr5 148362893 148363242 -4174017 - ORR1D1 LTR MaLR 0 374 46 9 1716 339 25 0 0 chr5 148363242 148363282 -4173977 + (TA)n Simple_repeat Simple_repeat 1 40 0 9 1716 1652 171 28 86 chr5 148363282 148363329 -4173930 - ORR1D1 LTR MaLR -329 45 1 9 1716 632 236 18 131 chr5 148363335 148363564 -4173695 - B4A SINE B4 -89 203 1 9 1716 387 104 299 0 chr5 148364325 148364402 -4172857 + B3 SINE B2 4 103 -113 9 1716 351 210 49 0 chr5 148364424 148364505 -4172754 + B3 SINE B2 1 85 -131 9 1716 21 36 0 0 chr5 148364522 148364550 -4172709 + AT_rich Low_complexity Low_complexity 1 28 0 9 1716 3529 25 2 0 chr5 148364675 148365070 -4172189 - MTA_Mm LTR MaLR 0 396 1 9 1716 417 164 0 9 chr5 148365218 148365297 -4171962 + B1_Mur4 SINE Alu 23 96 -24 9 1716 213 39 0 0 chr5 148365804 148365830 -4171429 + (T)n Simple_repeat Simple_repeat 1 26 0 9 1716 832 158 27 14 chr5 148365830 148365978 -4171281 - B1_Mur4 SINE Alu 0 150 1 9 1716 215 200 0 0 chr5 148366181 148366216 -4171043 - B1_Mus1 SINE Alu -112 36 2 9 1716 453 341 32 54 chr5 148366827 148367143 -4170116 + MT2A LTR ERVL 140 448 -85 9 1716 4291 25 0 2 chr5 148367211 148367694 -4169565 - LTRIS_Mm LTR ERV1 0 482 1 9 1716 33850 56 14 20 chr5 148367694 148372179 -4165080 - MuRRS-int LTR ERV1 0 4690 1 9 1716 4254 29 2 0 chr5 148372179 148372659 -4164600 - LTRIS_Mm LTR ERV1 0 482 2 9 1716 450 0 0 0 chr5 148372659 148372709 -4164550 + (TG)n Simple_repeat Simple_repeat 2 51 0 9 1716 369 276 107 27 chr5 148372709 148372858 -4164401 - B3 SINE B2 -51 165 5 9 1717 248 131 0 21 chr5 148373723 148373770 -4163489 + CT-rich Low_complexity Low_complexity 2 47 0 9 1717 222 37 0 0 chr5 148376275 148376302 -4160957 + (GGGTG)n Simple_repeat Simple_repeat 3 29 0 9 1717 209 57 29 0 chr5 148376944 148376979 -4160280 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 9 1717 788 215 63 130 chr5 148378323 148378623 -4158636 + B4A SINE B4 1 280 -12 9 1717 703 244 47 6 chr5 148379374 148379543 -4157716 - B3 SINE B2 -40 176 1 9 1717 1687 36 0 0 chr5 148379817 148380009 -4157250 - B2_Mm1a SINE B2 -1 192 1 9 1717 491 214 8 0 chr5 148380597 148380723 -4156536 + (CATA)n Simple_repeat Simple_repeat 3 129 0 9 1717 291 28 0 0 chr5 148380723 148380759 -4156500 + (TG)n Simple_repeat Simple_repeat 2 37 0 9 1717 297 0 0 0 chr5 148381896 148381929 -4155330 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 9 1717 518 207 9 9 chr5 148381983 148382095 -4155164 - PB1D10 SINE Alu -5 112 1 9 1717 225 0 0 0 chr5 148382263 148382288 -4154971 + (TA)n Simple_repeat Simple_repeat 1 25 0 9 1717 229 313 0 15 chr5 148382340 148382408 -4154851 + CT-rich Low_complexity Low_complexity 2 68 0 9 1717 380 131 0 14 chr5 148382658 148382728 -4154531 + (CA)n Simple_repeat Simple_repeat 1 69 0 9 1717 191 135 0 55 chr5 148382810 148382865 -4154394 + (CA)n Simple_repeat Simple_repeat 1 52 0 9 1717 396 0 0 0 chr5 148382883 148382927 -4154332 + (TC)n Simple_repeat Simple_repeat 1 44 0 9 1717 261 0 0 0 chr5 148382927 148382955 -4154304 + (CA)n Simple_repeat Simple_repeat 1 29 0 9 1717 321 26 0 0 chr5 148384221 148384259 -4153000 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 9 1717 468 250 9 0 chr5 148385319 148385431 -4151828 - PB1D10 SINE Alu -4 113 1 9 1717 291 319 78 0 chr5 148385536 148385652 -4151607 + MIR SINE MIR 72 196 -66 9 1717 987 74 16 38 chr5 148386607 148386790 -4150469 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 9 1717 249 98 0 0 chr5 148386813 148386854 -4150405 + (TATG)n Simple_repeat Simple_repeat 2 42 0 9 1717 1169 75 0 7 chr5 148386913 148387061 -4150198 - B1_Mus1 SINE Alu 0 148 2 9 1717 568 251 98 31 chr5 148387067 148387260 -4149999 - ID_B1 SINE B4 -17 207 2 9 1717 387 0 0 0 chr5 148387880 148387923 -4149336 + (TG)n Simple_repeat Simple_repeat 1 43 0 9 1717 392 236 43 11 chr5 148387923 148388017 -4149242 + PB1D9 SINE Alu 8 104 -16 9 1717 396 257 26 34 chr5 148388054 148388171 -4149088 + PB1D10 SINE Alu 1 116 -1 9 1717 284 247 56 49 chr5 148388947 148389109 -4148150 + RMER17D2 LTR ERVK 389 551 -258 9 1717 526 199 248 7 chr5 148389166 148389303 -4147956 + B3 SINE B2 29 198 -18 9 1717 716 165 17 11 chr5 148389341 148389519 -4147740 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 9 1717 1119 172 64 0 chr5 148390803 148391006 -4146253 + B3 SINE B2 1 216 0 9 1717 257 306 35 0 chr5 148391030 148391115 -4146144 + MER5A DNA MER1_type 2 89 -100 9 1717 230 304 39 19 chr5 148391152 148391256 -4146003 + MER5A DNA MER1_type 80 185 -4 9 1717 280 342 96 21 chr5 148392114 148392302 -4144957 - B3 SINE B2 -13 203 2 9 1717 455 278 86 68 chr5 148392142 148392304 -4144955 - RSINE1 SINE B4 0 165 1 9 1717 317 291 107 0 chr5 148392611 148392714 -4144545 - B1F SINE Alu -8 141 28 9 1717 1079 79 0 0 chr5 148393352 148393492 -4143767 + B2_Mm2 SINE B2 1 140 -55 9 1717 372 200 0 0 chr5 148393501 148393581 -4143678 + (TG)n Simple_repeat Simple_repeat 2 81 0 9 1717 22 56 0 0 chr5 148393616 148393652 -4143607 + AT_rich Low_complexity Low_complexity 1 36 0 9 1717 538 230 37 16 chr5 148394561 148394691 -4142568 - PB1D9 SINE Alu -20 129 1 9 1717 390 291 114 0 chr5 148394707 148394854 -4142405 - B3A SINE B2 0 198 15 9 1717 726 44 0 0 chr5 148394856 148394946 -4142313 + (TCCC)n Simple_repeat Simple_repeat 4 93 0 9 1717 184 346 41 62 chr5 148395324 148395469 -4141790 + MIRm SINE MIR 66 207 -69 9 1717 884 222 0 18 chr5 148396679 148396844 -4140415 - RSINE1 SINE B4 0 165 4 9 1717 354 23 0 0 chr5 148396866 148396909 -4140350 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1717 768 158 0 0 chr5 148396970 148397084 -4140175 + PB1D9 SINE Alu 1 114 -6 9 1717 822 223 19 63 chr5 148397265 148397471 -4139788 - B3A SINE B2 0 198 2 9 1717 244 318 11 45 chr5 148397472 148397561 -4139698 - PB1 SINE Alu -18 109 24 9 1717 279 202 0 0 chr5 148397668 148397762 -4139497 + CT-rich Low_complexity Low_complexity 2 95 0 9 1717 227 274 27 0 chr5 148397764 148397837 -4139422 - ID4 SINE ID -6 77 3 9 1717 332 375 53 0 chr5 148397897 148398049 -4139210 - MIR SINE MIR -74 188 29 9 1717 770 120 34 19 chr5 148398258 148398588 -4138671 + (TG)n Simple_repeat Simple_repeat 1 335 0 9 1717 643 260 98 22 chr5 148398629 148398861 -4138398 + B4A SINE B4 43 288 -4 9 1717 437 203 35 4 chr5 148398875 148399108 -4138151 + (CA)n Simple_repeat Simple_repeat 1 240 0 9 1717 316 220 11 42 chr5 148399108 148399203 -4138056 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 9 1717 793 239 120 14 chr5 148399399 148399615 -4137644 + B4A SINE B4 38 276 -16 9 1717 395 78 16 0 chr5 148399643 148399707 -4137552 + (CA)n Simple_repeat Simple_repeat 2 66 0 9 1717 1212 240 94 35 chr5 148399749 148400068 -4137191 + MTD LTR MaLR 5 342 -77 9 1717 293 287 79 0 chr5 148400338 148400439 -4136820 - MER58B DNA MER1_type -83 258 150 9 1717 617 189 228 28 chr5 148402016 148402196 -4135063 - B3 SINE B2 0 216 1 9 1717 539 235 78 0 chr5 148402652 148402767 -4134492 + RSINE1 SINE B4 3 126 -39 9 1717 315 0 0 0 chr5 148402767 148402802 -4134457 + (TC)n Simple_repeat Simple_repeat 1 35 0 9 1717 228 67 0 0 chr5 148402802 148402831 -4134428 + (CACG)n Simple_repeat Simple_repeat 1 30 0 9 1717 295 250 38 38 chr5 148402907 148402986 -4134273 - B3A SINE B2 -118 80 2 9 1717 207 69 0 0 chr5 148403047 148403076 -4134183 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 9 1717 532 200 0 19 chr5 148403101 148403208 -4134051 - B4 SINE B4 -2 290 186 9 1717 334 265 0 0 chr5 148403212 148403280 -4133979 - B4A SINE B4 -224 68 1 9 1717 285 98 0 0 chr5 148403281 148403322 -4133937 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 9 1717 770 31 0 10 chr5 148403322 148403420 -4133839 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 9 1717 215 250 100 0 chr5 148403600 148403660 -4133599 + L2b LINE L2 3309 3374 -1 9 1717 1029 207 59 0 chr5 148403958 148404161 -4133098 - B3 SINE B2 0 216 2 9 1717 190 279 58 14 chr5 148404324 148404393 -4132866 + MIRb SINE MIR 110 181 -87 9 1717 229 296 108 30 chr5 148404554 148404721 -4132538 - L1MA5 LINE L1 -18 6282 6103 9 1717 839 250 5 27 chr5 148404723 148404908 -4132351 + B3A SINE B2 1 181 -17 9 1717 244 184 167 26 chr5 148405217 148405295 -4131964 + PB1 SINE Alu 39 127 0 9 1717 218 226 32 0 chr5 148407446 148407508 -4129751 + (TGGA)n Simple_repeat Simple_repeat 2 65 0 9 1717 422 310 42 138 chr5 148408442 148408753 -4128506 + ORR1E LTR MaLR 1 281 -78 9 1717 210 143 0 0 chr5 148408753 148408788 -4128471 + (CCA)n Simple_repeat Simple_repeat 1 35 0 9 1717 626 68 11 0 chr5 148409262 148409350 -4127909 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 9 1717 435 119 0 0 chr5 148410640 148410707 -4126552 + (TG)n Simple_repeat Simple_repeat 1 67 0 9 1717 306 0 0 0 chr5 148411389 148411423 -4125836 + (CA)n Simple_repeat Simple_repeat 2 35 0 9 1717 1266 76 17 11 chr5 148411448 148411622 -4125637 + B2_Mm2 SINE B2 9 183 -12 1 1717 1234 136 143 8 chr5 148411622 148411867 -4125392 + ORR1C2 LTR MaLR 101 378 -6 1 1717 1249 89 0 6 chr5 148412019 148412189 -4125070 + B2_Mm2 SINE B2 2 170 -25 1 1717 197 86 57 0 chr5 148412239 148412274 -4124985 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 1 1717 914 220 65 0 chr5 148412357 148412557 -4124702 - B3 SINE B2 -3 213 1 1 1717 441 296 69 29 chr5 148413765 148413939 -4123320 + MIR SINE MIR 79 259 -3 1 1717 293 306 145 12 chr5 148414475 148414586 -4122673 + MIRb SINE MIR 40 162 -106 1 1717 342 0 0 0 chr5 148414586 148414624 -4122635 + (TC)n Simple_repeat Simple_repeat 2 39 0 1 1717 293 306 145 12 chr5 148414624 148414684 -4122575 + MIRb SINE MIR 163 233 -35 1 1717 180 0 0 0 chr5 148415564 148415584 -4121675 + (TAAAAA)n Simple_repeat Simple_repeat 4 23 0 1 1717 183 114 0 0 chr5 148415719 148415754 -4121505 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1 1717 296 190 0 12 chr5 148415776 148415861 -4121398 + (CA)n Simple_repeat Simple_repeat 1 84 0 1 1717 400 296 97 97 chr5 148416279 148416567 -4120692 - B4 SINE B4 -3 289 2 1 1717 480 125 0 14 chr5 148416594 148416667 -4120592 + ID4 SINE ID 2 73 -10 1 1717 1288 108 16 0 chr5 148416813 148416998 -4120261 + B2_Mm1t SINE B2 1 188 -5 1 1717 1262 27 0 14 chr5 148417005 148417153 -4120106 + B1_Mm SINE Alu 2 147 0 1 1717 212 0 36 0 chr5 148417161 148417189 -4120070 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1 1717 282 106 0 0 chr5 148417187 148417234 -4120025 + (A)n Simple_repeat Simple_repeat 1 47 0 1 1717 1005 205 28 37 chr5 148417932 148418150 -4119109 - B3 SINE B2 0 216 1 1 1717 360 64 0 0 chr5 148418306 148418353 -4118906 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1717 342 107 0 0 chr5 148419535 148419591 -4117668 + (GGGTG)n Simple_repeat Simple_repeat 3 58 0 1 1717 964 24 121 0 chr5 148419859 148419983 -4117276 + B1_Mus1 SINE Alu 1 139 -9 1 1717 257 0 30 0 chr5 148419983 148420016 -4117243 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1 1717 630 262 145 72 chr5 148420058 148420400 -4116859 + RMER13A LTR ERVK 100 497 -411 1 1717 789 104 0 0 chr5 148420423 148420529 -4116730 + B2_Mm2 SINE B2 12 117 -78 1 1717 234 361 127 44 chr5 148420579 148420831 -4116428 + RMER13A LTR ERVK 530 802 -58 1 1717 758 231 42 0 chr5 148420828 148420971 -4116288 + B3 SINE B2 41 189 -27 1 1717 342 61 0 0 chr5 148420972 148421021 -4116238 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1717 193 321 81 52 chr5 148421762 148421936 -4115323 - MIR SINE MIR -5 257 79 1 1717 182 281 18 0 chr5 148422020 148422077 -4115182 + MIR SINE MIR 59 116 -146 1 1717 648 278 34 63 chr5 148422157 148422364 -4114895 + B3 SINE B2 2 202 -14 1 1717 22 0 0 0 chr5 148422636 148422658 -4114601 + AT_rich Low_complexity Low_complexity 1 22 0 1 1717 1422 39 0 9 chr5 148423010 148423246 -4114013 + (TTAGGG)n Simple_repeat Simple_repeat 1 233 0 1 1717 745 197 0 11 chr5 148424086 148424116 -4113143 + polypyrimidine Low_complexity Low_complexity 152 180 0 1 1717 1135 61 0 37 chr5 148424116 148424303 -4112956 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1717 745 197 0 11 chr5 148424303 148424452 -4112807 + CT-rich Low_complexity Low_complexity 4 151 0 1 1717 978 120 0 0 chr5 148424452 148424585 -4112674 - B1_Mus1 SINE Alu 0 148 16 1 1717 880 200 194 0 chr5 148424589 148424769 -4112490 - B3 SINE B2 0 216 2 1 1717 1145 88 12 6 chr5 148424958 148425118 -4112141 + B2_Mm2 SINE B2 1 161 -34 1 1717 270 0 0 0 chr5 148425118 148425148 -4112111 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1 1717 244 265 12 24 chr5 148426571 148426656 -4110603 + G-rich Low_complexity Low_complexity 1 84 0 1 1717 193 293 0 17 chr5 148427292 148427351 -4109908 - L3 LINE CR1 -3293 1196 1139 1 1717 258 136 0 0 chr5 148427686 148427730 -4109529 + (CAGA)n Simple_repeat Simple_repeat 3 46 0 1 1717 737 167 23 0 chr5 148427784 148427958 -4109301 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1 1717 987 250 5 9 chr5 148428445 148428655 -4108604 + B3 SINE B2 1 209 -7 1 1717 614 272 62 11 chr5 148428808 148428983 -4108276 + B3A SINE B2 2 184 -11 1 1717 811 149 13 0 chr5 148428983 148429137 -4108122 + (TAGA)n Simple_repeat Simple_repeat 1 156 0 1 1717 447 248 161 24 chr5 148429158 148429282 -4107977 + ID_B1 SINE B4 82 222 -2 1 1717 269 305 0 47 chr5 148429332 148429418 -4107841 + ID4_ SINE ID 2 83 0 1 1717 1147 205 9 5 chr5 148430153 148430364 -4106895 - B3 SINE B2 -1 215 4 1 1717 774 225 78 47 chr5 148430390 148430581 -4106678 - B3A SINE B2 0 198 2 1 1717 201 158 26 0 chr5 148430642 148430680 -4106579 + GA-rich Low_complexity Low_complexity 1 39 0 1 1717 442 187 0 44 chr5 148430789 148430880 -4106379 - PB1D10 SINE Alu -7 140 24 1 1717 690 276 70 29 chr5 148430881 148431154 -4106105 - Lx9 LINE L1 -61 7583 7300 1 1717 644 204 368 29 chr5 148431155 148431432 -4105827 + MTD LTR MaLR 48 419 0 1 1717 667 206 11 0 chr5 148431589 148431764 -4105495 + (TG)n Simple_repeat Simple_repeat 2 178 0 1 1717 198 0 0 0 chr5 148432370 148432392 -4104867 + (TGG)n Simple_repeat Simple_repeat 3 24 0 1 1717 550 110 30 90 chr5 148432448 148432548 -4104711 - B1_Mur2 SINE Alu -1 148 55 1 1717 3126 143 46 13 chr5 148432548 148432984 -4104275 + RLTR20A LTR ERVK 1 439 -102 1 1717 222 62 0 0 chr5 148432984 148433016 -4104243 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1717 3126 143 46 13 chr5 148433016 148433103 -4104156 + RLTR20A LTR ERVK 440 540 -1 1 1717 333 233 0 0 chr5 148433103 148433163 -4104096 - PB1D9 SINE Alu -60 60 1 1 1717 402 276 85 17 chr5 148433164 148433282 -4103977 - L1M5 LINE L1 -1228 4918 4793 1 1717 1517 34 17 0 chr5 148433372 148433549 -4103710 - B2_Mm2 SINE B2 -14 181 2 1 1717 1030 221 38 5 chr5 148433596 148433805 -4103454 - B3 SINE B2 0 216 1 1 1717 3045 72 10 5 chr5 148433914 148434306 -4102953 + ORR1B1 LTR MaLR 1 394 0 1 1717 546 217 83 8 chr5 148434562 148434683 -4102576 - RSINE1 SINE B4 -32 133 4 1 1717 368 0 43 0 chr5 148435150 148435197 -4102062 + (TTTTG)n Simple_repeat Simple_repeat 4 52 0 1 1717 194 273 106 0 chr5 148435356 148435422 -4101837 + MIRm SINE MIR 161 233 -43 1 1717 394 258 85 8 chr5 148436256 148436290 -4100969 - B2_Mm2 SINE B2 -1 194 160 1 1717 265 47 47 0 chr5 148436290 148436333 -4100926 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1717 428 263 97 17 chr5 148436333 148436470 -4100789 - B3A SINE B2 -38 160 18 1 1717 201 132 0 0 chr5 148436850 148436888 -4100371 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1 1717 980 131 0 20 chr5 148436892 148437040 -4100219 - B1_Mus2 SINE Alu -2 145 1 1 1717 506 225 6 127 chr5 148437161 148437246 -4100013 + RCHARR1 DNA MER1_type 769 841 -133 1 1717 1031 144 40 23 chr5 148437246 148437423 -4099836 - B2_Mm2 SINE B2 -14 181 2 1 1717 506 225 6 127 chr5 148437423 148437495 -4099764 + RCHARR1 DNA MER1_type 842 907 -67 1 1717 288 0 0 0 chr5 148438065 148438097 -4099162 + (TC)n Simple_repeat Simple_repeat 2 33 0 1 1717 241 308 103 0 chr5 148438116 148438223 -4099036 + L1MB4 LINE L1 6048 6165 -15 1 1717 641 145 143 16 chr5 148439637 148439650 -4097609 + B1_Mus1 SINE Alu 7 20 -128 1 1717 435 38 0 0 chr5 148439650 148439703 -4097556 + (CA)n Simple_repeat Simple_repeat 1 53 0 1 1717 657 109 170 18 chr5 148439703 148439815 -4097444 + B1_Mur3 SINE Alu 21 149 0 1 1717 264 130 0 0 chr5 148439816 148439862 -4097397 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 1 1717 1553 57 0 0 chr5 148439956 148440148 -4097111 + L1_Mus1 LINE L1 6376 6567 0 1 1717 1217 75 0 0 chr5 148440163 148440310 -4096949 + B1_Mus1 SINE Alu 1 147 -1 1 1717 516 132 0 0 chr5 148440315 148440398 -4096861 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 1 1717 244 222 191 0 chr5 148440808 148440871 -4096388 + BC1_Mm scRNA scRNA 1 75 -77 1 1717 685 197 43 7 chr5 148441034 148441172 -4096087 + B1F2 SINE Alu 1 143 -6 1 1717 488 254 8 47 chr5 148442809 148442937 -4094322 - RSINE1 SINE B4 -38 127 5 1 1717 559 188 45 0 chr5 148443269 148443381 -4093878 - ID_B1 SINE B4 -3 221 105 1 1717 831 214 30 25 chr5 148444031 148444228 -4093031 + B3A SINE B2 1 198 0 1 1717 369 0 0 0 chr5 148444273 148444314 -4092945 + (CA)n Simple_repeat Simple_repeat 1 41 0 1 1717 957 163 0 0 chr5 148444962 148445115 -4092144 + B3A SINE B2 2 154 -44 1 1717 369 43 0 0 chr5 148445116 148445163 -4092096 + (CA)n Simple_repeat Simple_repeat 2 48 0 1 1717 703 206 92 63 chr5 148445311 148445518 -4091741 + B3 SINE B2 3 215 -1 1 1717 385 278 0 36 chr5 148445771 148445939 -4091320 + G-rich Low_complexity Low_complexity 3 164 0 1 1717 216 0 0 0 chr5 148446441 148446465 -4090794 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1717 281 281 9 17 chr5 148446797 148446913 -4090346 + (CAATA)n Simple_repeat Simple_repeat 3 117 0 1 1717 306 0 0 0 chr5 148447299 148447333 -4089926 + (TC)n Simple_repeat Simple_repeat 2 35 0 1 1717 297 0 0 0 chr5 148448167 148448200 -4089059 + (CA)n Simple_repeat Simple_repeat 1 33 0 1 1717 512 0 32 0 chr5 148448748 148448811 -4088448 + (TTTC)n Simple_repeat Simple_repeat 3 67 0 1 1717 216 97 0 0 chr5 148448967 148448998 -4088261 + (TC)n Simple_repeat Simple_repeat 2 32 0 1 1717 1388 62 78 0 chr5 148451416 148451576 -4085683 + B2_Mm1t SINE B2 1 160 -33 1 1717 207 0 0 0 chr5 148451576 148451599 -4085660 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1 1717 1388 62 78 0 chr5 148451599 148451617 -4085642 + B2_Mm1t SINE B2 161 191 -2 1 1717 201 167 0 0 chr5 148451841 148451861 -4085398 + A-rich Low_complexity Low_complexity 1 20 0 1 1717 1094 83 28 0 chr5 148451861 148452005 -4085254 + B1_Mus1 SINE Alu 1 148 0 1 1717 201 167 0 0 chr5 148452005 148452026 -4085233 + A-rich Low_complexity Low_complexity 21 41 0 1 1717 608 202 58 161 chr5 148452108 148452350 -4084909 + ID_B1 SINE B4 2 218 -6 1 1717 225 0 0 0 chr5 148453461 148453486 -4083773 + (CA)n Simple_repeat Simple_repeat 1 25 0 1 1717 225 0 0 0 chr5 148453510 148453535 -4083724 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 1 1717 998 150 202 0 chr5 148453772 148453945 -4083314 + B3 SINE B2 1 208 -8 1 1717 1070 223 5 9 chr5 148454547 148454764 -4082495 + B3 SINE B2 1 216 0 1 1717 297 0 0 0 chr5 148454806 148454839 -4082420 + (CA)n Simple_repeat Simple_repeat 2 34 0 1 1717 183 129 0 0 chr5 148454884 148454915 -4082344 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1 1717 504 208 173 16 chr5 148454999 148455126 -4082133 + B1_Mur2 SINE Alu 2 148 -1 1 1717 233 315 81 0 chr5 148455735 148455846 -4081413 + MER115 DNA Tip100 489 608 -85 1 1717 299 275 33 0 chr5 148456010 148456101 -4081158 + MER3 DNA MER1_type 78 171 -38 1 1717 233 224 0 0 chr5 148456282 148456340 -4080919 + T-rich Low_complexity Low_complexity 1 58 0 1 1717 735 158 104 8 chr5 148456341 148456475 -4080784 - B1_Mus1 SINE Alu 0 148 2 1 1717 574 167 183 0 chr5 148456480 148456600 -4080659 - URR1B DNA MER1_type -81 144 3 1 1717 411 21 0 0 chr5 148458345 148458393 -4078866 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1717 180 284 250 10 chr5 148458423 148458519 -4078740 + L3 LINE CR1 3384 3502 -987 1 1717 1410 146 5 0 chr5 148459042 148459248 -4078011 + B3 SINE B2 2 208 -8 1 1717 894 228 18 69 chr5 148460274 148460491 -4076768 + B3 SINE B2 2 207 -9 1 1717 593 94 257 28 chr5 148461165 148461274 -4075985 - B1_Mus2 SINE Alu -5 142 9 1 1717 483 176 0 0 chr5 148461281 148461372 -4075887 + CT-rich Low_complexity Low_complexity 2 92 0 1 1717 256 284 22 22 chr5 148461558 148461572 -4075687 + MT2B LTR ERVL 151 164 -437 1 1717 670 182 78 28 chr5 148461572 148461713 -4075546 + B1_Mur1 SINE Alu 2 149 0 1 1717 1040 123 7 0 chr5 148462360 148462506 -4074753 + B1_Mus2 SINE Alu 1 147 0 1 1717 24 0 0 0 chr5 148464080 148464104 -4073155 + AT_rich Low_complexity Low_complexity 1 24 0 1 1717 189 0 0 0 chr5 148464130 148464151 -4073108 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1 1717 313 277 25 102 chr5 148464784 148464941 -4072318 + B4 SINE B4 32 176 -116 1 1717 564 156 44 35 chr5 148464852 148464965 -4072294 + PB1D9 SINE Alu 7 120 0 1 1717 322 301 69 9 chr5 148464966 148465125 -4072134 + L1MEg LINE L1 1804 1952 -4132 1 1717 978 223 50 0 chr5 148465139 148465341 -4071918 + B3 SINE B2 4 215 -1 1 1717 465 286 10 96 chr5 148466083 148466280 -4070979 + B3A SINE B2 3 182 -16 1 1717 522 75 0 0 chr5 148466283 148466363 -4070896 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 1 1717 555 56 0 0 chr5 148466371 148466442 -4070817 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 1 1717 285 29 0 0 chr5 148466442 148466475 -4070784 + (GA)n Simple_repeat Simple_repeat 2 35 0 1 1717 252 0 0 0 chr5 148467093 148467121 -4070138 + (TG)n Simple_repeat Simple_repeat 2 29 0 1 1717 1041 144 80 30 chr5 148467442 148467642 -4069617 - B3 SINE B2 0 216 7 1 1717 684 129 54 10 chr5 148468037 148468342 -4068917 + (TG)n Simple_repeat Simple_repeat 1 318 0 1 1717 180 0 0 0 chr5 148468568 148468588 -4068671 + (CCA)n Simple_repeat Simple_repeat 2 21 0 1 1717 270 0 0 0 chr5 148469104 148469134 -4068125 + (CAAAC)n Simple_repeat Simple_repeat 2 31 0 1 1717 377 244 47 93 chr5 148470420 148470592 -4066667 - RSINE1 SINE B4 0 165 2 1 1717 291 54 0 0 chr5 148478347 148478384 -4058875 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 1 1717 315 0 0 0 chr5 148478635 148478670 -4058589 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1 1717 317 253 112 47 chr5 148478698 148478868 -4058391 - MIRc SINE MIR -61 207 27 1 1717 895 174 28 0 chr5 148479125 148479269 -4057990 - B1_Mur1 SINE Alu 0 149 2 1 1717 1390 219 89 23 chr5 148479415 148479789 -4057470 - MTD LTR MaLR -14 405 10 1 1717 1183 164 15 10 chr5 148480276 148480479 -4056780 + B3 SINE B2 3 206 -10 1 1717 219 36 0 0 chr5 148480481 148480509 -4056750 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 1 1717 451 298 85 0 chr5 148481497 148481685 -4055574 - L1MA6 LINE L1 -38 6262 6059 1 1717 1100 30 8 0 chr5 148481795 148481929 -4055330 - B1_Mm SINE Alu 0 147 13 1 1717 464 198 25 117 chr5 148481829 148481949 -4055310 - MT2B LTR ERVL -337 264 156 1 1717 588 126 175 0 chr5 148484493 148484596 -4052663 + B1_Mus1 SINE Alu 1 121 -27 1 1717 1116 150 77 39 chr5 148484779 148484987 -4052272 + B3 SINE B2 1 216 0 1 1717 216 0 0 0 chr5 148485404 148485428 -4051831 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1 1717 1099 89 7 0 chr5 148485684 148485830 -4051429 + B1_Mus2 SINE Alu 1 147 0 1 1717 202 209 45 0 chr5 148486144 148486211 -4051048 + (TTTA)n Simple_repeat Simple_repeat 4 73 0 1 1717 688 248 74 79 chr5 148486212 148486226 -4051033 - B3 SINE B2 0 216 208 1 1717 1011 134 0 0 chr5 148486226 148486368 -4050891 - B1_Mus1 SINE Alu -6 142 1 1 1717 688 248 74 79 chr5 148486368 148486568 -4050691 - B3 SINE B2 -9 207 3 1 1717 1934 127 102 36 chr5 148488485 148488869 -4048390 + RLTR9E LTR ERVK 1 409 0 1 1717 1262 240 82 67 chr5 148489067 148489517 -4047742 - Lx8 LINE L1 -29 7444 6988 1 1717 1409 49 21 16 chr5 148489978 148490165 -4047094 - B2_Mm2 SINE B2 -7 188 1 1 1717 1041 144 0 0 chr5 148490185 148490359 -4046900 + (TTTC)n Simple_repeat Simple_repeat 4 177 0 1 1717 191 204 20 0 chr5 148490359 148490408 -4046851 + CT-rich Low_complexity Low_complexity 2 51 0 1 1717 513 275 99 11 chr5 148491425 148491616 -4045643 - MER3 DNA MER1_type -1 208 1 1 1717 1080 211 28 9 chr5 148491672 148491883 -4045376 - B3 SINE B2 -1 215 1 1 1717 360 0 0 0 chr5 148491896 148491936 -4045323 + (TC)n Simple_repeat Simple_repeat 1 40 0 1 1717 723 142 278 0 chr5 148491941 148492110 -4045149 - B3 SINE B2 0 216 1 1 1717 225 0 0 0 chr5 148492644 148492669 -4044590 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1717 1117 67 0 0 chr5 148494611 148494746 -4042513 - B1_Mm SINE Alu -11 136 2 1 1717 198 71 0 0 chr5 148495305 148495333 -4041926 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1 1717 231 36 0 0 chr5 148496962 148496990 -4040269 + (TG)n Simple_repeat Simple_repeat 1 28 0 1 1717 276 102 0 0 chr5 148496990 148497039 -4040220 + (GA)n Simple_repeat Simple_repeat 2 50 0 1 1717 684 151 19 0 chr5 148497069 148497175 -4040084 - B1F2 SINE Alu -12 137 30 1 1717 199 50 49 24 chr5 148498051 148498092 -4039167 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 1 1717 26 30 0 0 chr5 148498554 148498587 -4038672 + AT_rich Low_complexity Low_complexity 1 33 0 1 1717 339 25 0 0 chr5 148498741 148498781 -4038478 + (TG)n Simple_repeat Simple_repeat 1 40 0 1 1717 308 272 108 11 chr5 148498807 148498900 -4038359 - B3A SINE B2 -18 180 79 1 1717 1016 260 72 85 chr5 148498951 148499184 -4038075 + L1M4 LINE L1 2351 2582 -3564 1 1717 839 230 11 0 chr5 148499184 148499362 -4037897 - B3A SINE B2 -18 180 1 1 1717 1016 260 72 85 chr5 148499362 148499742 -4037517 + L1M4 LINE L1 2583 2956 -3190 1 1717 426 181 112 70 chr5 148500007 148500221 -4037038 + L1M4 LINE L1 3387 3609 -2537 1 1717 1158 82 0 0 chr5 148500227 148500373 -4036886 + B1_Mus1 SINE Alu 1 146 -2 2 1717 201 146 0 0 chr5 148500375 148500423 -4036836 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 3 1717 769 144 30 22 chr5 148500436 148500571 -4036688 + B1_Mur4 SINE Alu 2 137 -13 4 1717 842 272 77 61 chr5 148500588 148501015 -4036244 + L1M4 LINE L1 5292 5725 -459 1 1717 899 144 14 7 chr5 148501018 148501165 -4036094 + B1_Mur2 SINE Alu 2 149 0 5 1717 1664 16 0 21 chr5 148501837 148502028 -4035231 + B2_Mm1a SINE B2 1 187 -6 6 1717 538 326 86 65 chr5 148502066 148502404 -4034855 - ORR1E LTR MaLR -5 354 10 7 1717 186 43 0 0 chr5 148502668 148502691 -4034568 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1717 265 330 101 27 chr5 148503332 148503493 -4033766 - MIR3 SINE MIR -4 204 35 9 1717 221 330 55 0 chr5 148504064 148504155 -4033104 - L3 LINE CR1 -98 4391 4296 1 1717 808 156 199 6 chr5 148504307 148504488 -4032771 - B3 SINE B2 0 216 1 1 1717 244 240 0 0 chr5 148504508 148504558 -4032701 - L1M4 LINE L1 -1199 4947 4898 1 1718 240 200 0 0 chr5 148504617 148504662 -4032597 + L1MD LINE L1 4977 5021 -1125 1 1718 1291 253 96 27 chr5 148504755 148505161 -4032098 + L1MC1 LINE L1 5391 5824 -509 1 1718 340 214 163 0 chr5 148505163 148505261 -4031998 + ID_B1 SINE B4 2 115 -109 1 1718 327 215 0 34 chr5 148505308 148505486 -4031773 + GA-rich Low_complexity Low_complexity 1 172 0 1 1718 526 245 28 21 chr5 148505596 148505738 -4031521 - B1_Mur2 SINE Alu 0 149 7 1 1718 289 274 36 0 chr5 148505792 148505876 -4031383 + L1MC1 LINE L1 6044 6130 -203 1 1718 432 240 42 0 chr5 148505889 148505985 -4031274 + B1F2 SINE Alu 36 135 -14 1 1718 313 260 114 0 chr5 148506031 148506154 -4031105 + L1MC1 LINE L1 6163 6299 -34 1 1718 387 0 0 0 chr5 148506191 148506234 -4031025 + (CA)n Simple_repeat Simple_repeat 2 44 0 1 1718 354 294 108 8 chr5 148506251 148506371 -4030888 + B3A SINE B2 57 188 -10 2 1718 796 97 83 61 chr5 148506852 148506984 -4030275 + B1_Mus1 SINE Alu 14 148 0 2 1718 244 284 21 10 chr5 148509585 148509681 -4027578 - MER117 DNA MER1_type -30 167 71 2 1718 609 186 48 41 chr5 148510036 148510182 -4027077 - B2_Mm2 SINE B2 -1 194 48 2 1718 634 220 156 0 chr5 148510614 148510660 -4026599 - B3 SINE B2 -1 215 167 2 1718 266 0 0 29 chr5 148510660 148510695 -4026564 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1718 634 220 156 0 chr5 148510695 148510834 -4026425 - B3 SINE B2 -50 166 2 2 1718 342 0 0 0 chr5 148510903 148510941 -4026318 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 1718 486 256 21 107 chr5 148512104 148512123 -4025136 - PB1D7 SINE Alu -20 128 45 2 1718 238 283 106 106 chr5 148512123 148512197 -4025062 - B4 SINE B4 -95 197 133 2 1718 2137 125 93 11 chr5 148512197 148512561 -4024698 + ORR1B1 LTR MaLR 1 394 0 2 1718 486 286 0 48 chr5 148512561 148512607 -4024652 - PB1D7 SINE Alu -76 44 1 2 1718 238 283 106 106 chr5 148512607 148512628 -4024631 - B4 SINE B4 -160 132 57 2 1718 250 152 44 29 chr5 148512946 148513014 -4024245 + (TCTCTG)n Simple_repeat Simple_repeat 6 74 0 3 1718 564 254 45 59 chr5 148513480 148513945 -4023314 - RMER17C LTR ERVK -32 378 1 3 1718 305 318 100 56 chr5 148514082 148514242 -4023017 + L4 LINE RTE 965 1131 -898 3 1718 1028 171 104 0 chr5 148514717 148514910 -4022349 + B3 SINE B2 2 214 -2 3 1718 460 248 9 54 chr5 148515025 148515136 -4022123 + PB1D10 SINE Alu 1 106 -11 3 1718 286 200 45 65 chr5 148515658 148515813 -4021446 + (TTATA)n Simple_repeat Simple_repeat 3 154 0 3 1718 277 188 45 45 chr5 148515857 148515924 -4021335 + 4.5SRNA scRNA scRNA 22 88 -6 3 1718 403 187 0 51 chr5 148515868 148515938 -4021321 + PB1D9 SINE Alu 38 107 -13 3 1718 513 0 0 0 chr5 148515938 148515995 -4021264 + (TAAAA)n Simple_repeat Simple_repeat 1 57 0 3 1718 456 282 82 13 chr5 148516173 148516331 -4020928 + B3A SINE B2 14 182 -16 3 1718 771 168 15 0 chr5 148516723 148516854 -4020405 + B1_Mur1 SINE Alu 2 134 -15 4 1718 441 300 61 91 chr5 148516908 148517300 -4019959 + L1M4 LINE L1 5293 5691 -483 4 1718 734 203 66 3 chr5 148517300 148517473 -4019786 + B3A SINE B2 26 203 -13 4 1718 469 255 4 16 chr5 148517517 148517762 -4019497 + (CA)n Simple_repeat Simple_repeat 1 241 0 4 1718 657 241 14 14 chr5 148518080 148518227 -4019032 + B1_Mur1 SINE Alu 2 148 -1 4 1718 643 277 45 13 chr5 148519683 148519840 -4017419 + RSINE1 SINE B4 2 163 -2 4 1718 383 106 15 0 chr5 148519845 148519911 -4017348 + (CA)n Simple_repeat Simple_repeat 2 68 0 4 1718 1236 142 29 19 chr5 148521293 148521502 -4015757 + B3 SINE B2 4 214 -2 4 1718 466 327 16 114 chr5 148521822 148522139 -4015120 - B4A SINE B4 -2 290 5 4 1718 353 273 91 0 chr5 148522167 148522277 -4014982 - B1F SINE Alu -15 134 15 4 1718 686 232 0 84 chr5 148522380 148522559 -4014700 - RSINE1 SINE B4 0 165 2 5 1718 387 41 0 0 chr5 148523299 148523348 -4013911 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1718 477 60 0 15 chr5 148523949 148524017 -4013242 - B1_Mur2 SINE Alu -43 106 40 5 1718 240 111 0 0 chr5 148524017 148524062 -4013197 + (CCTG)n Simple_repeat Simple_repeat 2 46 0 5 1718 285 170 18 36 chr5 148524063 148524118 -4013141 - B1_Mus2 SINE Alu -92 55 2 5 1718 300 247 36 36 chr5 148524914 148524998 -4012261 + RLTR25A LTR ERVK 489 572 -531 5 1718 843 55 0 18 chr5 148524935 148525047 -4012212 + B1_Mus1 SINE Alu 39 148 0 5 1718 291 85 0 0 chr5 148525047 148525094 -4012165 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 5 1718 243 0 0 0 chr5 148525345 148525372 -4011887 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 5 1718 1041 46 15 44 chr5 148525372 148525509 -4011750 - B1_Mus2 SINE Alu -13 134 2 5 1718 540 0 0 0 chr5 148525559 148525619 -4011640 + (GA)n Simple_repeat Simple_repeat 2 61 0 6 1718 704 209 6 0 chr5 148525702 148526028 -4011231 + (CA)n Simple_repeat Simple_repeat 1 328 0 6 1718 404 269 6 0 chr5 148526053 148526228 -4011031 + (CA)n Simple_repeat Simple_repeat 1 176 0 6 1718 226 372 26 34 chr5 148526427 148526544 -4010715 + MIRc SINE MIR 20 135 -133 6 1718 423 0 0 0 chr5 148527485 148527532 -4009727 + (CA)n Simple_repeat Simple_repeat 1 47 0 6 1718 712 181 15 23 chr5 148527608 148527738 -4009521 + B1_Mur2 SINE Alu 2 130 -19 6 1718 813 168 0 16 chr5 148527745 148527927 -4009332 + GA-rich Low_complexity Low_complexity 2 180 0 6 1718 276 130 0 0 chr5 148527937 148527983 -4009276 + (CTG)n Simple_repeat Simple_repeat 3 48 0 6 1718 237 350 86 19 chr5 148528279 148528489 -4008770 + MLT1H LTR MaLR 75 298 -251 6 1718 221 154 18 71 chr5 148529492 148529548 -4007711 + MER5A DNA MER1_type 19 71 -118 6 1718 244 267 0 16 chr5 148529554 148529615 -4007644 + B4A SINE B4 2 61 -231 6 1718 253 59 0 0 chr5 148529617 148529651 -4007608 - B3 SINE B2 -181 35 2 7 1718 261 303 133 38 chr5 148529662 148529820 -4007439 - MER5B DNA MER1_type -2 176 4 7 1718 354 355 119 15 chr5 148529961 148530221 -4007038 + Tigger11a DNA MER2_type 93 379 -356 7 1718 256 306 69 30 chr5 148530326 148530427 -4006832 + Tigger11a DNA MER2_type 553 657 -78 7 1718 654 159 0 0 chr5 148530768 148530894 -4006365 + (TG)n Simple_repeat Simple_repeat 2 127 0 7 1718 947 182 193 0 chr5 148531051 148531232 -4006027 + B3 SINE B2 1 216 0 7 1718 943 148 31 52 chr5 148531342 148531534 -4005725 + B2_Mm2 SINE B2 1 188 -7 7 1718 264 302 106 112 chr5 148531536 148531715 -4005544 - B3A SINE B2 -19 179 2 7 1718 898 163 0 0 chr5 148532390 148532525 -4004734 - B1_Mur4 SINE Alu -2 148 14 7 1718 294 263 13 13 chr5 148532599 148532676 -4004583 + ID4 SINE ID 4 80 -3 7 1718 396 0 0 0 chr5 148532676 148532720 -4004539 + (CTA)n Simple_repeat Simple_repeat 1 44 0 7 1718 180 0 0 0 chr5 148533457 148533477 -4003782 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 8 1718 25 51 0 0 chr5 148534084 148534123 -4003136 + AT_rich Low_complexity Low_complexity 1 39 0 8 1718 555 159 234 0 chr5 148534569 148534676 -4002583 + B1_Mur4 SINE Alu 2 133 -17 8 1718 225 65 0 0 chr5 148534686 148534717 -4002542 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1718 269 286 47 54 chr5 148535046 148535194 -4002065 - B1F SINE Alu -2 147 1 8 1718 241 346 0 15 chr5 148535318 148535395 -4001864 + polypurine Low_complexity Low_complexity 2 77 0 8 1718 294 29 0 0 chr5 148535395 148535430 -4001829 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 8 1718 241 346 0 15 chr5 148535430 148535484 -4001775 + polypurine Low_complexity Low_complexity 78 130 0 8 1718 24 0 0 0 chr5 148536373 148536397 -4000862 + GC_rich Low_complexity Low_complexity 1 24 0 8 1718 252 0 0 0 chr5 148538320 148538348 -3998911 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1718 321 135 0 0 chr5 148540225 148540277 -3996982 + (GGA)n Simple_repeat Simple_repeat 3 54 0 9 1718 1154 109 6 6 chr5 148540526 148540692 -3996567 + B2_Mm2 SINE B2 2 167 -28 9 1718 405 0 0 0 chr5 148540692 148540737 -3996522 + (TTG)n Simple_repeat Simple_repeat 2 46 0 9 1718 866 161 0 92 chr5 148541314 148541478 -3995781 - B1_Mur1 SINE Alu 0 149 1 9 1718 213 94 0 0 chr5 148542454 148542486 -3994773 + (CAA)n Simple_repeat Simple_repeat 2 33 0 9 1718 416 213 0 0 chr5 148542490 148542565 -3994694 + B1_Mus1 SINE Alu 1 75 -73 9 1718 754 155 40 40 chr5 148542567 148542715 -3994544 + B1_Mur3 SINE Alu 1 148 -1 9 1718 190 247 160 27 chr5 148542891 148542966 -3994293 + L3 LINE CR1 962 1046 -3443 9 1718 2404 20 100 10 chr5 148543319 148543629 -3993630 - ORR1A1 LTR MaLR -8 338 1 9 1718 300 53 0 0 chr5 148544350 148544388 -3992871 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 9 1718 180 0 0 0 chr5 148544901 148544921 -3992338 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1 1718 654 276 16 42 chr5 148545340 148545529 -3991730 + B3 SINE B2 22 205 -11 1 1718 186 43 0 0 chr5 148545531 148545554 -3991705 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 1 1718 396 0 0 0 chr5 148545572 148545616 -3991643 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1 1718 1079 82 0 0 chr5 148545619 148545754 -3991505 - B1_Mus1 SINE Alu -12 136 2 1 1718 300 165 118 84 chr5 148545949 148546068 -3991191 - B3A SINE B2 0 198 76 1 1718 381 131 0 0 chr5 148546097 148546158 -3991101 + (CGTG)n Simple_repeat Simple_repeat 1 61 0 1 1718 1669 155 40 20 chr5 148546163 148546660 -3990599 + RLTR20D LTR ERVK 6 564 -4 1 1718 528 91 0 0 chr5 148546660 148546748 -3990511 + (TG)n Simple_repeat Simple_repeat 1 88 0 1 1718 224 150 25 0 chr5 148546767 148546807 -3990452 - ID4_ SINE ID -39 44 4 1 1718 497 80 13 0 chr5 148546929 148547004 -3990255 + (TG)n Simple_repeat Simple_repeat 2 77 0 1 1718 293 217 13 92 chr5 148547085 148547161 -3990098 + RSINE1 SINE B4 45 114 -51 1 1718 228 122 0 0 chr5 148547162 148547203 -3990056 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1718 581 246 34 34 chr5 148547313 148547340 -3989919 + ID_B1 SINE B4 78 211 -13 1 1718 228 299 40 101 chr5 148547340 148547446 -3989813 - YREP_Mm Unknown Unknown -1518 294 190 1 1718 1185 62 7 0 chr5 148547446 148547591 -3989668 + B1_Mus1 SINE Alu 2 147 -1 1 1718 581 246 34 34 chr5 148547591 148547604 -3989655 + ID_B1 SINE B4 212 224 0 1 1718 228 299 40 101 chr5 148547604 148547633 -3989626 - YREP_Mm Unknown Unknown -1623 189 155 1 1718 222 293 2 0 chr5 148547659 148547714 -3989545 + PB1D7 SINE Alu 16 71 -56 1 1718 615 27 0 0 chr5 148547749 148547822 -3989437 + (CA)n Simple_repeat Simple_repeat 2 74 0 1 1718 243 0 0 0 chr5 148547890 148547917 -3989342 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1 1718 608 147 0 0 chr5 148547919 148548014 -3989245 - B1_Mur4 SINE Alu -55 95 1 1 1718 571 160 90 0 chr5 148548195 148548295 -3988964 + B3 SINE B2 1 109 -107 1 1718 553 270 93 13 chr5 148548875 148549025 -3988234 + B4A SINE B4 6 167 -125 1 1718 309 51 0 0 chr5 148549128 148549167 -3988092 + (CA)n Simple_repeat Simple_repeat 2 40 0 1 1718 323 200 257 0 chr5 148549187 148549257 -3988002 + PB1D7 SINE Alu 32 119 -1 1 1718 597 185 0 0 chr5 148550168 148550287 -3986972 + (CATA)n Simple_repeat Simple_repeat 2 120 0 1 1718 1218 190 25 0 chr5 148550291 148550491 -3986768 - B3 SINE B2 -11 205 1 1 1718 213 95 71 0 chr5 148550496 148550538 -3986721 + CT-rich Low_complexity Low_complexity 3 47 0 1 1718 318 148 0 0 chr5 148550538 148550592 -3986667 + (TCCC)n Simple_repeat Simple_repeat 4 57 0 1 1718 817 142 21 21 chr5 148550598 148550742 -3986517 - B1_Mus1 SINE Alu 0 148 5 1 1718 425 239 66 101 chr5 148550891 148551053 -3986206 - ORR1E LTR MaLR -14 405 220 1 1718 220 342 0 73 chr5 148551037 148551119 -3986140 + ID2 SINE ID 6 81 -2 1 1718 1868 140 88 6 chr5 148551209 148551526 -3985733 - ORR1B2 LTR MaLR 0 367 25 1 1718 802 156 50 0 chr5 148551577 148551718 -3985541 - B1_Mur2 SINE Alu -1 148 1 1 1718 714 152 18 0 chr5 148551870 148551982 -3985277 - B1_Mus1 SINE Alu -32 116 3 1 1718 381 323 55 8 chr5 148552043 148552171 -3985088 - B1F1 SINE Alu -5 144 11 1 1718 288 359 68 20 chr5 148552171 148552189 -3985070 - ID_B1 SINE B4 -3 219 67 1 1718 345 281 93 8 chr5 148552470 148552599 -3984660 + B1F SINE Alu 5 144 -5 1 1718 282 236 139 0 chr5 148552606 148552678 -3984581 + ID SINE ID 1 82 -142 1 1718 640 156 0 15 chr5 148552682 148552812 -3984447 + GA-rich Low_complexity Low_complexity 2 129 0 1 1718 869 151 6 22 chr5 148552886 148552994 -3984265 + polypyrimidine Low_complexity Low_complexity 74 180 0 1 1718 633 177 48 34 chr5 148552994 148553140 -3984119 - B1_Mus1 SINE Alu 0 148 1 1 1718 869 151 6 22 chr5 148553140 148553214 -3984045 + polypyrimidine Low_complexity Low_complexity 1 73 0 1 1718 587 81 12 0 chr5 148553214 148553300 -3983959 + (TTTC)n Simple_repeat Simple_repeat 4 90 0 1 1718 711 212 18 28 chr5 148553306 148553501 -3983758 - B3 SINE B2 0 195 6 1 1718 802 191 0 0 chr5 148553535 148553661 -3983598 + B3 SINE B2 5 130 -86 1 1718 432 0 0 0 chr5 148553672 148553720 -3983539 + (CA)n Simple_repeat Simple_repeat 1 48 0 1 1718 428 150 164 39 chr5 148553756 148553860 -3983399 + PB1D9 SINE Alu 2 118 -2 1 1718 22 0 0 0 chr5 148554804 148554826 -3982433 + AT_rich Low_complexity Low_complexity 1 22 0 1 1718 331 212 37 12 chr5 148554826 148554907 -3982352 - RLTR11A2 LTR ERVK -34 493 411 1 1718 1095 237 94 38 chr5 148555019 148555398 -3981861 + RMER13A LTR ERVK 118 669 -237 1 1718 292 342 87 48 chr5 148555375 148555581 -3981678 + RMER13A LTR ERVK 559 772 -136 1 1718 1420 236 16 71 chr5 148555699 148556123 -3981136 - RLTR11A2 LTR ERVK -120 407 7 1 1718 440 272 18 0 chr5 148556220 148556334 -3980925 + PB1D10 SINE Alu 1 116 -1 1 1718 771 243 102 49 chr5 148556456 148556681 -3980578 + MTD LTR MaLR 183 419 0 1 1718 2505 84 37 20 chr5 148556732 148556825 -3980434 - RLTR10D LTR ERVK -1 358 271 1 1718 324 0 0 0 chr5 148556825 148556861 -3980398 + (TC)n Simple_repeat Simple_repeat 1 36 0 1 1718 2505 84 37 20 chr5 148556861 148557119 -3980140 - RLTR10D LTR ERVK -89 270 1 1 1718 371 313 22 25 chr5 148557173 148557411 -3979848 + MLT1A LTR MaLR 16 368 -40 1 1718 331 262 0 0 chr5 148557481 148557561 -3979698 - ID4 SINE ID 0 83 4 1 1718 304 239 40 0 chr5 148557770 148557846 -3979413 - B1F SINE Alu -12 105 30 1 1718 384 301 117 39 chr5 148558004 148558184 -3979075 + B3A SINE B2 1 194 -1 1 1718 521 305 7 21 chr5 148558301 148558445 -3978814 - RSINE1 SINE B4 -22 143 2 1 1718 265 250 0 136 chr5 148558526 148558614 -3978645 + PB1D10 SINE Alu 35 110 -7 1 1718 1234 117 27 0 chr5 148558626 148558814 -3978445 + B2_Mm2 SINE B2 3 195 0 1 1718 1209 103 54 5 chr5 148558987 148559173 -3978086 - B2_Mm2 SINE B2 0 195 1 1 1718 227 281 17 17 chr5 148559189 148559247 -3978012 + RSINE1 SINE B4 87 144 -21 1 1718 362 197 0 78 chr5 148559289 148559366 -3977893 + ID4 SINE ID 10 80 -3 1 1718 180 0 0 0 chr5 148560761 148560781 -3976478 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1 1718 878 167 184 0 chr5 148560882 148561056 -3976203 + B3 SINE B2 1 206 -10 1 1718 237 303 0 5 chr5 148561917 148562021 -3975238 + ID2 SINE ID 2 104 -48 1 1718 1230 141 0 20 chr5 148562025 148562221 -3975038 + B2_Mm1a SINE B2 2 193 0 1 1718 1488 53 37 5 chr5 148562641 148562829 -3974430 - B2_Mm2 SINE B2 -1 194 1 1 1718 216 67 0 0 chr5 148563730 148563760 -3973499 + (TC)n Simple_repeat Simple_repeat 1 30 0 1 1718 1620 27 0 0 chr5 148563760 148564088 -3973171 + (TCTCCC)n Simple_repeat Simple_repeat 1 328 0 1 1718 233 348 0 19 chr5 148564155 148564316 -3972943 + (TG)n Simple_repeat Simple_repeat 1 158 0 1 1718 223 233 0 32 chr5 148564405 148564467 -3972792 + A-rich Low_complexity Low_complexity 4 63 0 1 1718 230 211 364 9 chr5 148565028 148565138 -3972121 + PB1D10 SINE Alu 1 149 0 1 1718 191 167 0 23 chr5 148565381 148565424 -3971835 + CT-rich Low_complexity Low_complexity 5 46 0 1 1718 1227 41 7 0 chr5 148565424 148565570 -3971689 - B1_Mus1 SINE Alu 0 148 2 1 1718 1655 145 176 3 chr5 148565673 148565891 -3971368 + ORR1D1 LTR MaLR 1 228 -146 1 1718 219 36 0 0 chr5 148565891 148565919 -3971340 + (CCTG)n Simple_repeat Simple_repeat 3 30 0 1 1718 1655 145 176 3 chr5 148565919 148566019 -3971240 + ORR1D1 LTR MaLR 229 373 -1 1 1718 289 342 27 0 chr5 148566834 148566907 -3970352 + RSINE1 SINE B4 3 77 -88 1 1718 342 0 0 0 chr5 148566918 148566956 -3970303 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1718 193 295 65 72 chr5 148567398 148567511 -3969748 + L3 LINE CR1 4324 4437 -52 1 1718 279 0 0 0 chr5 148567511 148567542 -3969717 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1 1718 995 98 0 0 chr5 148567543 148567676 -3969583 - B1_Mus1 SINE Alu -15 133 1 1 1718 193 295 65 72 chr5 148567676 148567699 -3969560 + L3 LINE CR1 4438 4459 -30 1 1718 1431 60 16 11 chr5 148567866 148568052 -3969207 + B2_Mm2 SINE B2 1 187 -8 1 1718 269 143 46 31 chr5 148568115 148568180 -3969079 + ID4_ SINE ID 5 70 -13 1 1718 1307 300 50 28 chr5 148568383 148568963 -3968296 + L1ME1 LINE L1 5498 6090 -89 1 1718 905 151 13 20 chr5 148569004 148569153 -3968106 + B1_Mus1 SINE Alu 1 148 0 1 1718 297 0 0 0 chr5 148569166 148569199 -3968060 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 1 1718 1006 157 0 0 chr5 148569213 148569360 -3967899 + B1_Mur2 SINE Alu 2 148 -1 1 1718 336 175 0 0 chr5 148569364 148569461 -3967798 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 1 1718 1126 169 38 28 chr5 148569508 148569721 -3967538 - B3 SINE B2 -1 215 1 1 1718 557 300 132 42 chr5 148570480 148571079 -3966180 - L1MB2 LINE L1 -67 6104 5441 1 1718 317 254 154 0 chr5 148571838 148571948 -3965311 + MER20 DNA MER1_type 16 142 -77 1 1718 370 323 83 24 chr5 148572147 148572315 -3964944 + B4 SINE B4 27 204 -88 1 1718 815 85 0 0 chr5 148572222 148572328 -3964931 + B1_Mus1 SINE Alu 22 127 -21 1 1718 212 171 0 0 chr5 148572329 148572364 -3964895 + GA-rich Low_complexity Low_complexity 2 36 0 1 1718 193 349 89 27 chr5 148572707 148572819 -3964440 - L2c LINE L2 -233 3154 3036 1 1718 220 286 89 42 chr5 148572900 148573068 -3964191 - L2c LINE L2 -409 3010 2835 1 1718 522 43 0 0 chr5 148573302 148573371 -3963888 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1718 647 230 7 62 chr5 148573385 148573529 -3963730 - RSINE1 SINE B4 -25 140 5 1 1718 299 234 25 49 chr5 148573809 148573890 -3963369 + B3A SINE B2 1 79 -119 1 1718 236 130 22 0 chr5 148573892 148573938 -3963321 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 1718 717 184 0 15 chr5 148574037 148574376 -3962883 + (TG)n Simple_repeat Simple_repeat 1 333 0 2 1718 234 119 143 0 chr5 148574378 148574420 -3962839 - L1M2 LINE L1 -537 5754 5707 2 1718 533 194 9 37 chr5 148574969 148575076 -3962183 + B1_Mur2 SINE Alu 46 149 0 2 1718 587 325 28 19 chr5 148575249 148575462 -3961797 - Tigger5 DNA MER2_type -30 2376 2162 2 1718 225 0 0 0 chr5 148575531 148575556 -3961703 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2 1718 1203 70 19 0 chr5 148575556 148575714 -3961545 - B2_Mm2 SINE B2 -34 161 1 2 1718 237 352 37 0 chr5 148575785 148575893 -3961366 + Lx9 LINE L1 7231 7342 -302 2 1718 423 96 24 12 chr5 148576081 148576165 -3961094 + (TA)n Simple_repeat Simple_repeat 1 85 0 2 1718 2846 212 94 60 chr5 148576196 148577006 -3960253 + RMER19B LTR ERVK 1 837 -65 2 1718 1214 95 6 0 chr5 148577314 148577493 -3959766 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2 1718 285 29 0 0 chr5 148578049 148578083 -3959176 + (GGA)n Simple_repeat Simple_repeat 1 34 0 2 1718 905 153 136 5 chr5 148578410 148578601 -3958658 + B3 SINE B2 1 216 0 2 1718 471 263 40 63 chr5 148578720 148578846 -3958413 - RSINE1 SINE B4 -5 160 38 2 1718 230 270 0 73 chr5 148579104 148579172 -3958087 - MER57C2 LTR ERV1 -277 157 95 2 1718 480 284 120 51 chr5 148580059 148580081 -3957178 - B4A SINE B4 -4 288 269 2 1718 186 118 0 0 chr5 148580081 148580115 -3957144 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 1718 480 284 120 51 chr5 148580115 148580326 -3956933 - B4A SINE B4 -24 268 39 2 1718 212 387 0 0 chr5 148580360 148580435 -3956824 - ID4_ SINE ID -4 79 5 2 1718 814 209 0 0 chr5 148580500 148580648 -3956611 + B3A SINE B2 1 148 -50 2 1718 1242 57 14 0 chr5 148580648 148580857 -3956402 + (TCTA)n Simple_repeat Simple_repeat 1 211 0 2 1718 203 88 29 0 chr5 148580891 148580925 -3956334 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2 1718 378 302 93 26 chr5 148582010 148582258 -3955001 - MLT1A1 LTR MaLR -38 370 13 2 1718 189 0 0 0 chr5 148582551 148582572 -3954687 + (TTGG)n Simple_repeat Simple_repeat 2 22 0 2 1718 990 108 0 21 chr5 148582612 148582754 -3954505 - B1_Mus1 SINE Alu 0 148 10 2 1718 263 122 61 0 chr5 148582793 148582842 -3954417 - B2_Mm2 SINE B2 -7 188 137 2 1718 398 39 15 0 chr5 148582834 148582887 -3954372 - B2_Mm2 SINE B2 -84 114 56 2 1718 1253 115 0 0 chr5 148582947 148583121 -3954138 - B2_Mm2 SINE B2 -21 174 1 2 1718 308 200 62 0 chr5 148583150 148583215 -3954044 + ID4 SINE ID 2 70 -13 2 1718 367 293 0 0 chr5 148583506 148583605 -3953654 + PB1D10 SINE Alu 4 102 -15 2 1718 216 0 0 0 chr5 148584285 148584309 -3952950 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2 1718 309 301 72 65 chr5 148584715 148584868 -3952391 - RSINE1 SINE B4 0 165 12 2 1718 547 244 82 19 chr5 148584918 148585065 -3952194 + B3A SINE B2 8 159 -36 2 1718 297 0 0 0 chr5 148585065 148585098 -3952161 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 1718 204 67 0 0 chr5 148585098 148585128 -3952131 + (TATAA)n Simple_repeat Simple_repeat 3 32 0 2 1718 333 288 86 69 chr5 148585128 148585154 -3952105 + B2_Mm2 SINE B2 160 184 -11 2 1718 1013 225 10 5 chr5 148585764 148585956 -3951303 - B3 SINE B2 -20 196 4 2 1718 528 59 0 0 chr5 148585958 148586026 -3951233 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 1718 216 0 0 0 chr5 148586706 148586730 -3950529 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2 1718 311 222 25 90 chr5 148587467 148587604 -3949655 - B3A SINE B2 -1 197 67 2 1718 567 0 0 0 chr5 148588107 148588170 -3949089 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 1718 614 227 3 0 chr5 148588365 148588480 -3948779 - B1_Mur2 SINE Alu -31 118 1 2 1718 501 191 0 0 chr5 148588504 148588619 -3948640 + (TG)n Simple_repeat Simple_repeat 1 115 0 2 1718 711 234 57 28 chr5 148588619 148588795 -3948464 - B3A SINE B2 -16 182 2 2 1718 345 287 59 0 chr5 148588796 148588897 -3948362 - MTE2a LTR MaLR -60 319 213 2 1718 286 225 80 53 chr5 148589038 148589113 -3948146 - MTEb LTR MaLR -116 263 187 2 1718 243 122 0 0 chr5 148589308 148589357 -3947902 + (TCTCTG)n Simple_repeat Simple_repeat 2 50 0 2 1718 277 181 42 11 chr5 148589644 148589739 -3947520 + CT-rich Low_complexity Low_complexity 4 101 0 2 1718 239 331 120 17 chr5 148590765 148590940 -3946319 - Charlie18a DNA MER1_type -5 337 145 2 1718 2167 102 12 58 chr5 148591113 148591457 -3945802 + ORR1A4 LTR MaLR 2 329 0 2 1718 510 17 0 0 chr5 148591712 148591771 -3945488 + (TG)n Simple_repeat Simple_repeat 1 59 0 2 1718 185 267 239 22 chr5 148591825 148591959 -3945300 - MIRb SINE MIR -19 249 87 2 1718 185 242 60 75 chr5 148592042 148592109 -3945150 - L2a LINE L2 0 3426 3361 2 1718 806 247 38 52 chr5 148592470 148592816 -3944443 + RLTR15 LTR ERVK 2 342 -17 2 1718 270 269 0 15 chr5 148593320 148593388 -3943871 - MLT1A1 LTR MaLR -1 407 341 2 1718 1063 109 97 0 chr5 148593555 148593720 -3943539 - B2_Mm2 SINE B2 -14 181 1 2 1718 249 169 0 44 chr5 148594025 148594093 -3943166 + G-rich Low_complexity Low_complexity 3 67 0 2 1718 665 235 144 5 chr5 148595866 148596054 -3941205 - B3 SINE B2 -1 215 2 2 1718 335 309 28 9 chr5 148596194 148596302 -3940957 - PB1 SINE Alu -17 110 1 2 1718 228 267 23 98 chr5 148596603 148596736 -3940523 + RLTR22_Mur LTR ERVK 1306 1428 -420 2 1718 531 138 0 0 chr5 148596959 148597046 -3940213 + (TA)n Simple_repeat Simple_repeat 2 88 0 2 1718 2362 98 3 0 chr5 148597051 148597377 -3939882 + ORR1A2 LTR MaLR 1 327 0 2 1718 297 255 39 48 chr5 148597717 148597820 -3939439 - MER45A DNA Tip100 -37 141 40 2 1718 306 0 0 0 chr5 148597933 148597967 -3939292 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 2 1718 282 244 25 0 chr5 148597974 148598093 -3939166 + CT-rich Low_complexity Low_complexity 2 123 0 2 1718 487 269 9 44 chr5 148599136 148599249 -3938010 - PB1D10 SINE Alu -8 109 1 2 1718 22 35 0 0 chr5 148599474 148599503 -3937756 + AT_rich Low_complexity Low_complexity 1 29 0 2 1718 646 257 8 103 chr5 148599503 148599593 -3937666 - B3 SINE B2 0 216 150 2 1718 1065 108 11 6 chr5 148599593 148599770 -3937489 + (CATA)n Simple_repeat Simple_repeat 1 178 0 2 1718 646 257 8 103 chr5 148599770 148599913 -3937346 - B3 SINE B2 -67 149 5 2 1718 214 298 34 103 chr5 148600267 148600413 -3936846 + L2b LINE L2 3017 3152 -223 2 1718 1740 211 67 30 chr5 148600759 148601165 -3936094 + MTC LTR MaLR 1 421 0 2 1718 489 217 34 25 chr5 148601175 148601293 -3935966 + PB1 SINE Alu 6 124 -3 2 1718 21 57 0 0 chr5 148601836 148601871 -3935388 + AT_rich Low_complexity Low_complexity 1 35 0 2 1718 28 0 0 0 chr5 148601888 148601916 -3935343 + AT_rich Low_complexity Low_complexity 1 28 0 2 1718 235 135 125 71 chr5 148601931 148601987 -3935272 + PB1D9 SINE Alu 1 59 -61 2 1718 237 218 112 56 chr5 148602055 148602162 -3935097 + RLTR25B LTR ERVK 397 509 -519 2 1718 633 118 47 47 chr5 148602099 148602191 -3935068 + B1_Mur3 SINE Alu 42 138 -11 2 1718 188 0 74 0 chr5 148602191 148602218 -3935041 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2 1718 633 118 47 47 chr5 148602218 148602232 -3935027 + B1_Mur3 SINE Alu 139 148 -1 2 1718 314 237 76 67 chr5 148602568 148602688 -3934571 - MLT1A1 LTR MaLR -9 399 238 2 1718 244 170 19 0 chr5 148602734 148602787 -3934472 + A-rich Low_complexity Low_complexity 4 57 0 2 1718 201 162 0 0 chr5 148602780 148602817 -3934442 + (TTAA)n Simple_repeat Simple_repeat 3 39 0 2 1718 1033 194 48 10 chr5 148602837 148603045 -3934214 - B3 SINE B2 0 216 1 2 1718 255 125 0 0 chr5 148603048 148603088 -3934171 + (TTA)n Simple_repeat Simple_repeat 1 40 0 2 1718 455 273 36 0 chr5 148603088 148603198 -3934061 - PB1D7 SINE Alu -1 119 6 2 1718 224 176 0 0 chr5 148603523 148603557 -3933702 + B1_Mus2 SINE Alu 2 35 -112 2 1718 616 174 106 0 chr5 148603776 148603908 -3933351 + B3 SINE B2 10 155 -61 2 1718 387 0 0 0 chr5 148603919 148603962 -3933297 + (CA)n Simple_repeat Simple_repeat 2 44 0 2 1718 34 42 0 0 chr5 148604029 148604077 -3933182 + AT_rich Low_complexity Low_complexity 1 48 0 2 1718 278 200 37 55 chr5 148604077 148604241 -3933018 + (TTATA)n Simple_repeat Simple_repeat 4 164 0 2 1718 286 195 61 9 chr5 148604188 148604302 -3932957 + (TA)n Simple_repeat Simple_repeat 1 120 0 2 1718 266 244 40 142 chr5 148604898 148605151 -3932108 + ORR1E LTR MaLR 81 307 -52 2 1718 327 294 81 40 chr5 148605166 148605315 -3931944 - HAL1-3A_ME LINE L1 -420 2438 2284 2 1718 659 148 25 34 chr5 148605324 148605569 -3931690 + CT-rich Low_complexity Low_complexity 1 242 0 2 1718 814 178 87 29 chr5 148605766 148605974 -3931285 + URR1A DNA MER1_type 5 224 -2 2 1718 396 0 0 0 chr5 148606248 148606292 -3930967 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1718 224 326 94 0 chr5 148606947 148607085 -3930174 + MIRc SINE MIR 2 161 -101 2 1718 1019 71 7 0 chr5 148607148 148607289 -3929970 + (TG)n Simple_repeat Simple_repeat 2 143 0 2 1718 1068 293 14 33 chr5 148607290 148607565 -3929694 - B4A SINE B4 -22 270 1 2 1718 240 265 0 0 chr5 148607621 148607670 -3929589 + polypyrimidine Low_complexity Low_complexity 3 51 0 2 1718 1677 212 128 33 chr5 148607673 148608102 -3929157 - MT2A LTR ERVL -4 529 60 2 1718 290 286 11 61 chr5 148608305 148608430 -3928829 - PB1D7 SINE Alu -32 117 1 2 1718 1031 232 117 78 chr5 148608835 148608854 -3928405 + MTD LTR MaLR 1 14 -405 2 1718 186 71 0 0 chr5 148608854 148608882 -3928377 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 3 1718 1031 232 117 78 chr5 148608882 148609203 -3928056 + MTD LTR MaLR 15 353 -66 2 1718 2332 97 34 74 chr5 148609203 148609583 -3927676 - RLTR10B2 LTR ERVK 0 365 1 3 1718 1031 232 117 78 chr5 148609583 148609601 -3927658 + MTD LTR MaLR 354 373 -46 2 1718 22266 56 1 3 chr5 148609603 148613329 -3923930 - MMERVK10C-int LTR ERVK -22 7658 3920 3 1718 29389 54 2 1 chr5 148613329 148616870 -3920389 - MMERVK10C-int LTR ERVK -3812 3769 225 3 1718 255 222 0 0 chr5 148616870 148616915 -3920344 - RLTR27 LTR ERVK -34 275 231 3 1718 689 57 0 0 chr5 148616915 148617003 -3920256 - MMERVK10C-int LTR ERVK -7478 103 16 3 1718 2273 65 33 79 chr5 148617003 148617371 -3919888 - RLTR10B2 LTR ERVK -14 351 1 3 1718 365 145 29 14 chr5 148617371 148617441 -3919818 + MTD LTR MaLR 349 419 0 2 1718 210 275 57 107 chr5 148618434 148618556 -3918703 - B1_Mur3 SINE Alu -24 125 10 3 1718 542 239 159 0 chr5 148618456 148618619 -3918640 - ID_B1 SINE B4 -34 190 2 3 1718 1846 134 67 99 chr5 148618729 148619134 -3918125 + ORR1B1 LTR MaLR 3 394 0 3 1718 270 56 0 0 chr5 148619494 148619530 -3917729 + (GA)n Simple_repeat Simple_repeat 1 36 0 3 1718 2719 28 12 27 chr5 148619567 148619899 -3917360 - IAPLTR2_Mm LTR ERVK 0 327 1 3 1718 6372 65 14 17 chr5 148619901 148620732 -3916527 - IAPEz-int LTR ERVK -2 6479 5651 3 1718 11036 60 60 30 chr5 148620725 148622213 -3915046 - IAPEz-int LTR ERVK -4781 1700 168 3 1718 234 267 0 0 chr5 148622213 148622258 -3915001 - RLTR27 LTR ERVK -34 275 231 3 1718 1014 121 25 99 chr5 148622266 148622468 -3914791 - IAPEz-int LTR ERVK -6286 195 9 3 1718 3008 40 202 0 chr5 148622469 148622864 -3914395 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1718 342 0 0 0 chr5 148623054 148623092 -3914167 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 3 1718 639 71 0 0 chr5 148623153 148623238 -3914021 + (TC)n Simple_repeat Simple_repeat 1 85 0 3 1718 189 114 0 0 chr5 148623266 148623281 -3913978 + (T)n Simple_repeat Simple_repeat 1 15 0 3 1718 1030 114 7 26 chr5 148623281 148623434 -3913825 - B1_Mur4 SINE Alu 0 150 1 3 1718 189 114 0 0 chr5 148623434 148623453 -3913806 + (T)n Simple_repeat Simple_repeat 1 19 0 3 1718 246 372 8 8 chr5 148623563 148623693 -3913566 + (TG)n Simple_repeat Simple_repeat 1 130 0 3 1718 201 327 0 0 chr5 148623803 148623855 -3913404 + polypyrimidine Low_complexity Low_complexity 110 161 0 3 1718 319 282 27 38 chr5 148624430 148624586 -3912673 + L1MC5 LINE L1 6767 6978 -904 3 1718 698 270 62 65 chr5 148624841 148625106 -3912153 + L1MB3 LINE L1 5056 5324 -816 3 1718 969 191 65 0 chr5 148625106 148625305 -3911954 + B3 SINE B2 1 212 -4 3 1718 698 241 167 113 chr5 148625305 148625550 -3911709 + L1MB3 LINE L1 5325 5596 -572 3 1718 211 325 131 12 chr5 148625552 148625636 -3911623 + B4A SINE B4 42 135 -157 3 1718 276 253 154 0 chr5 148625595 148625686 -3911573 + PB1D7 SINE Alu 10 114 -6 3 1718 633 271 109 96 chr5 148625687 148625901 -3911358 + L1MB3 LINE L1 5607 5816 -367 3 1718 1145 171 17 47 chr5 148625901 148626134 -3911125 + URR1A DNA MER1_type 1 226 0 3 1718 633 271 109 96 chr5 148626134 148626368 -3910891 + L1MB3 LINE L1 5817 6061 -122 3 1718 857 204 24 6 chr5 148627008 148627176 -3910083 + RMER10A LTR ERVL 1 171 -271 3 1718 195 42 0 0 chr5 148627198 148627222 -3910037 + (CCCCCT)n Simple_repeat Simple_repeat 2 25 0 3 1718 1078 192 38 5 chr5 148628119 148628328 -3908931 + B3 SINE B2 1 216 0 3 1718 567 43 0 0 chr5 148628615 148628685 -3908574 + (TTTC)n Simple_repeat Simple_repeat 4 73 0 3 1718 982 148 195 5 chr5 148629156 148629346 -3907913 + URR1A DNA MER1_type 1 226 0 3 1718 1194 192 15 0 chr5 148629746 148629949 -3907310 + B3 SINE B2 4 209 -7 3 1718 1300 61 53 42 chr5 148630148 148630337 -3906922 - B2_Mm2 SINE B2 -3 192 2 3 1718 298 309 153 1 chr5 148630409 148630575 -3906684 + MIRc SINE MIR 38 227 -41 3 1718 182 65 0 61 chr5 148630805 148630838 -3906421 + (AAATG)n Simple_repeat Simple_repeat 4 34 0 3 1718 1186 43 0 0 chr5 148631068 148631206 -3906053 + B1_Mus1 SINE Alu 3 140 -8 3 1718 363 96 0 0 chr5 148631225 148631277 -3905982 + (A)n Simple_repeat Simple_repeat 1 52 0 3 1718 664 190 241 0 chr5 148631596 148631770 -3905489 + B3 SINE B2 1 216 0 3 1718 1046 226 0 0 chr5 148632401 148632609 -3904650 + B3 SINE B2 1 208 -8 3 1718 1574 57 0 5 chr5 148632630 148632824 -3904435 + B2_Mm2 SINE B2 3 195 0 3 1718 351 113 0 0 chr5 148633069 148633122 -3904137 + (T)n Simple_repeat Simple_repeat 1 53 0 3 1718 1082 88 0 7 chr5 148633122 148633270 -3903989 - B1_Mm SINE Alu 0 147 1 3 1718 1285 168 9 14 chr5 148633319 148633536 -3903723 + B3 SINE B2 1 216 0 3 1718 367 274 91 5 chr5 148633543 148633741 -3903518 + L1M4 LINE L1 5046 5260 -886 3 1718 867 268 32 34 chr5 148634428 148634769 -3902490 + L1M4 LINE L1 5290 5626 -554 3 1718 232 191 24 70 chr5 148634893 148634963 -3902296 - MIR SINE MIR -85 183 111 3 1718 426 39 0 0 chr5 148635151 148635203 -3902056 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 3 1718 837 104 86 23 chr5 148635203 148635331 -3901928 - B1_Mur2 SINE Alu -12 137 2 3 1718 216 226 16 31 chr5 148635489 148635553 -3901706 + CT-rich Low_complexity Low_complexity 1 63 0 3 1718 230 333 0 0 chr5 148635553 148635625 -3901634 - ID4 SINE ID -11 72 1 3 1719 280 282 13 13 chr5 148635657 148635736 -3901523 + ID4 SINE ID 4 82 -1 3 1719 905 341 104 15 chr5 148635789 148636375 -3900884 - L1MB2 LINE L1 -111 6060 5423 3 1719 483 63 0 0 chr5 148636792 148636855 -3900404 + (CA)n Simple_repeat Simple_repeat 1 63 0 3 1719 250 335 131 38 chr5 148638324 148638704 -3898555 + L2a LINE L2 2921 3379 -47 3 1719 1249 176 8 22 chr5 148638742 148639009 -3898250 + RMER10B LTR ERVL 3 265 -133 3 1719 205 29 29 29 chr5 148639019 148639054 -3898205 + (TCC)n Simple_repeat Simple_repeat 1 35 0 3 1719 1051 145 5 39 chr5 148639055 148639263 -3897996 + RMER10B LTR ERVL 197 397 -1 3 1719 341 281 0 0 chr5 148639752 148639834 -3897425 - ID4_ SINE ID -1 82 1 3 1719 413 261 33 0 chr5 148639842 148639934 -3897325 - PB1D7 SINE Alu -8 112 18 3 1719 32 0 0 43 chr5 148639964 148639989 -3897270 + AT_rich Low_complexity Low_complexity 1 24 0 3 1719 2001 120 23 7 chr5 148639989 148640290 -3896969 - Lx4A LINE L1 -2 7056 6751 3 1719 32 0 0 43 chr5 148640290 148640311 -3896948 + AT_rich Low_complexity Low_complexity 1 21 0 3 1719 2290 98 28 0 chr5 148640895 148641212 -3896047 + ORR1A2 LTR MaLR 1 326 -1 3 1719 277 250 0 16 chr5 148641417 148641478 -3895781 - B3 SINE B2 -7 209 150 3 1719 317 156 35 3 chr5 148641480 148641548 -3895711 - B2_Mm2 SINE B2 -102 91 19 3 1719 189 147 0 0 chr5 148641679 148641713 -3895546 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 3 1719 368 228 55 37 chr5 148642697 148642861 -3894398 + (TGGG)n Simple_repeat Simple_repeat 1 167 0 3 1719 189 102 0 75 chr5 148642886 148642939 -3894320 + (TGGG)n Simple_repeat Simple_repeat 3 51 0 3 1719 734 240 0 7 chr5 148643279 148643430 -3893829 - B1_Mur4 SINE Alu 0 150 1 3 1719 1325 208 101 20 chr5 148643467 148643605 -3893654 - Lx9 LINE L1 -12 7632 7500 3 1719 1347 72 0 0 chr5 148643605 148643785 -3893474 + (TG)n Simple_repeat Simple_repeat 1 180 0 3 1719 1325 208 101 20 chr5 148643785 148644004 -3893255 - Lx9 LINE L1 -145 7499 7246 3 1719 678 139 26 17 chr5 148644047 148644164 -3893095 + PB1D9 SINE Alu 2 119 -1 3 1719 186 366 0 0 chr5 148644490 148644572 -3892687 - MIRb SINE MIR -139 129 48 3 1719 1230 34 0 20 chr5 148644925 148645075 -3892184 - B1_Mus2 SINE Alu 0 147 1 3 1719 182 268 36 0 chr5 148645093 148645149 -3892110 + MIR SINE MIR 128 185 -77 3 1719 1553 177 122 6 chr5 148645272 148645624 -3891635 - MTD LTR MaLR -1 418 26 3 1719 1185 99 41 0 chr5 148645688 148645859 -3891400 + B2_Mm1t SINE B2 2 179 -14 3 1719 360 121 0 39 chr5 148645905 148645972 -3891287 + B2_Mm2 SINE B2 47 109 -107 3 1719 270 0 0 0 chr5 148645986 148646016 -3891243 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3 1719 210 37 0 0 chr5 148647248 148647275 -3889984 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 3 1719 363 267 10 10 chr5 148647279 148647381 -3889878 - PB1D10 SINE Alu -15 102 1 3 1719 735 211 62 36 chr5 148647450 148647642 -3889617 - B3 SINE B2 -5 211 15 3 1719 918 169 208 0 chr5 148647848 148648026 -3889233 - B3 SINE B2 0 216 2 3 1719 466 228 115 69 chr5 148648785 148648959 -3888300 + B3A SINE B2 1 182 -16 3 1719 4173 61 17 0 chr5 148649176 148649704 -3887555 - L1Md_F2 LINE L1 0 6582 6046 3 1719 1089 80 0 21 chr5 148650245 148650386 -3886873 + B1_Mus2 SINE Alu 1 138 -9 3 1719 269 26 26 0 chr5 148650386 148650424 -3886835 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 3 1719 543 280 94 29 chr5 148650471 148650716 -3886543 - L1MB3 LINE L1 -139 6044 5773 3 1719 963 100 144 0 chr5 148651888 148652048 -3885211 - B2_Mm2 SINE B2 0 195 13 3 1719 888 82 0 0 chr5 148652048 148652170 -3885089 + (TTCC)n Simple_repeat Simple_repeat 4 125 0 3 1719 380 213 54 27 chr5 148652170 148652281 -3884978 + L1MA5 LINE L1 6183 6296 -4 3 1719 911 210 58 24 chr5 148652289 148652494 -3884765 + B3 SINE B2 1 212 -4 3 1719 279 235 22 90 chr5 148652521 148652610 -3884649 - ID4_ SINE ID 0 83 1 3 1719 180 0 0 0 chr5 148652612 148652632 -3884627 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 1719 671 199 60 20 chr5 148652869 148653018 -3884241 + B3A SINE B2 2 156 -42 3 1719 303 28 0 0 chr5 148653025 148653061 -3884198 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 1719 195 271 0 40 chr5 148653530 148653580 -3883679 + L4 LINE RTE 1813 1860 -169 3 1719 829 201 19 118 chr5 148653704 148653982 -3883277 - MTE2a LTR MaLR -171 248 18 3 1719 867 213 71 5 chr5 148654444 148654628 -3882631 - B3 SINE B2 0 216 21 3 1719 233 284 25 57 chr5 148654965 148655099 -3882160 - MIR SINE MIR -97 179 46 3 1719 205 237 0 0 chr5 148655104 148655142 -3882117 + C-rich Low_complexity Low_complexity 1 38 0 3 1719 243 0 0 0 chr5 148655413 148655440 -3881819 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 1719 324 312 120 120 chr5 148656226 148656517 -3880742 - B4 SINE B4 0 292 2 3 1719 237 305 303 7 chr5 148656846 148656998 -3880261 - LTR16C LTR ERVL -105 384 188 3 1719 201 74 0 0 chr5 148657315 148657342 -3879917 + (A)n Simple_repeat Simple_repeat 1 27 0 3 1719 228 35 0 0 chr5 148657407 148657436 -3879823 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 4 1719 405 0 0 0 chr5 148657694 148657739 -3879520 + (GA)n Simple_repeat Simple_repeat 2 46 0 4 1719 408 182 0 0 chr5 148658002 148658090 -3879169 + (TG)n Simple_repeat Simple_repeat 1 88 0 4 1719 982 108 13 20 chr5 148658178 148658329 -3878930 - B1_Mur4 SINE Alu 0 150 1 4 1719 900 261 22 27 chr5 148658329 148658553 -3878706 - B4A SINE B4 -62 230 8 4 1719 522 264 18 0 chr5 148658652 148658762 -3878497 + PB1D7 SINE Alu 3 114 -6 4 1719 853 214 19 24 chr5 148660148 148660354 -3876905 - B3 SINE B2 -7 209 5 4 1719 700 152 8 17 chr5 148661385 148661505 -3875754 + B1_Mur1 SINE Alu 23 141 -8 4 1719 274 215 96 104 chr5 148661395 148661530 -3875729 + B4 SINE B4 118 251 -41 4 1719 221 304 25 25 chr5 148662885 148663003 -3874256 + (TG)n Simple_repeat Simple_repeat 2 119 0 4 1719 373 155 27 18 chr5 148663029 148663141 -3874118 + (TG)n Simple_repeat Simple_repeat 1 113 0 4 1719 367 293 197 49 chr5 148663228 148663472 -3873787 - B4A SINE B4 -11 281 2 4 1719 210 143 0 0 chr5 148663482 148663517 -3873742 + (TCC)n Simple_repeat Simple_repeat 2 36 0 4 1719 877 53 0 9 chr5 148663521 148663635 -3873624 - B1_Mus1 SINE Alu 0 148 36 4 1719 905 57 16 0 chr5 148663636 148663759 -3873500 + (TTTC)n Simple_repeat Simple_repeat 4 128 0 4 1719 964 111 9 8 chr5 148663765 148663911 -3873348 - B2_Mm2 SINE B2 -59 157 1 4 1719 483 261 130 83 chr5 148663965 148664241 -3873018 - B4A SINE B4 -2 290 2 4 1719 404 257 0 73 chr5 148664251 148664360 -3872899 - PB1D7 SINE Alu -8 112 12 4 1719 582 41 0 0 chr5 148664604 148664677 -3872582 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 4 1719 227 319 0 28 chr5 148664731 148664802 -3872457 + C-rich Low_complexity Low_complexity 5 73 0 4 1719 246 271 23 23 chr5 148665062 148665149 -3872110 + ORR1D2 LTR MaLR 284 370 0 4 1719 472 273 110 107 chr5 148665531 148665830 -3871429 + Lx8 LINE L1 3788 4087 -2059 4 1719 207 87 14 68 chr5 148665962 148666036 -3871223 + T-rich Low_complexity Low_complexity 5 74 0 4 1719 553 320 21 21 chr5 148666099 148666338 -3870921 + B4A SINE B4 8 246 -46 4 1719 450 0 0 0 chr5 148666415 148666465 -3870794 + (CA)n Simple_repeat Simple_repeat 2 51 0 4 1719 1149 123 0 0 chr5 148666465 148666644 -3870615 + (GA)n Simple_repeat Simple_repeat 1 179 0 4 1719 494 333 167 47 chr5 148666677 148667163 -3870096 + Lx8 LINE L1 4368 4911 -1235 4 1719 325 222 14 14 chr5 148667360 148667433 -3869826 + ID4_ SINE ID 1 73 -10 4 1719 826 273 63 11 chr5 148667763 148667920 -3869339 + Lx8 LINE L1 5289 5483 -681 4 1719 700 212 7 14 chr5 148667920 148668068 -3869191 + B1_Mur2 SINE Alu 2 148 -1 4 1719 826 281 94 80 chr5 148668068 148668159 -3869100 + Lx8 LINE L1 5454 5543 -304 4 1719 1187 203 14 5 chr5 148668159 148668367 -3868892 + B3 SINE B2 2 211 -5 4 1719 1744 290 74 58 chr5 148668367 148669299 -3867960 + Lx8 LINE L1 5544 6506 -967 4 1719 268 331 151 7 chr5 148669304 148669456 -3867803 - MIR SINE MIR -87 175 2 4 1719 2434 74 3 87 chr5 148669588 148669658 -3867601 - ORR1A2 LTR MaLR 0 327 268 4 1719 1607 22 27 0 chr5 148669658 148669842 -3867417 + B2_Mm1a SINE B2 2 190 -3 4 1719 2434 74 3 87 chr5 148669842 148670127 -3867132 - ORR1A2 LTR MaLR -60 267 2 4 1719 279 0 0 0 chr5 148670176 148670207 -3867052 + (TG)n Simple_repeat Simple_repeat 1 31 0 4 1719 446 319 14 21 chr5 148670295 148670439 -3866820 + ID_B1 SINE B4 80 222 -2 4 1719 496 245 91 0 chr5 148670671 148670814 -3866445 - B3A SINE B2 -10 188 33 4 1719 792 257 70 74 chr5 148670804 148671060 -3866199 + MTEa LTR MaLR 49 303 -76 4 1719 550 217 82 155 chr5 148671064 148671271 -3865988 + B3 SINE B2 2 193 -23 4 1719 21 0 0 0 chr5 148671283 148671304 -3865955 + AT_rich Low_complexity Low_complexity 1 21 0 4 1719 1269 27 7 0 chr5 148671315 148671461 -3865798 + B1_Mus2 SINE Alu 1 147 0 4 1719 303 232 0 42 chr5 148674462 148674534 -3862725 - ID4 SINE ID -13 70 2 4 1719 325 286 18 125 chr5 148674667 148674803 -3862456 + B4 SINE B4 142 262 -30 4 1719 359 113 0 16 chr5 148674803 148674866 -3862393 + (CA)n Simple_repeat Simple_repeat 2 63 0 4 1719 325 286 18 125 chr5 148674866 148674897 -3862362 + B4 SINE B4 263 291 -1 4 1719 490 180 0 14 chr5 148674912 148675053 -3862206 + (CA)n Simple_repeat Simple_repeat 2 140 0 4 1719 180 0 0 0 chr5 148675089 148675109 -3862150 + (CA)n Simple_repeat Simple_repeat 2 21 0 4 1719 514 155 87 10 chr5 148675129 148675233 -3862026 + PB1D9 SINE Alu 2 113 -7 4 1719 198 0 0 0 chr5 148675276 148675298 -3861961 + (G)n Simple_repeat Simple_repeat 1 22 0 4 1719 651 187 33 66 chr5 148675298 148675481 -3861778 + Lx7 LINE L1 7006 7182 -514 4 1719 270 208 0 25 chr5 148675517 148675596 -3861663 + Lx7 LINE L1 7354 7430 -266 4 1719 203 231 0 0 chr5 148675633 148675672 -3861587 + GA-rich Low_complexity Low_complexity 4 42 0 4 1719 931 152 55 6 chr5 148676166 148676331 -3860928 + B3 SINE B2 2 174 -42 4 1719 1126 224 14 0 chr5 148676767 148676977 -3860282 + B3 SINE B2 1 213 -3 4 1719 2249 98 13 6 chr5 148677148 148677465 -3859794 - ORR1A2 LTR MaLR -8 319 1 4 1719 9297 150 74 9 chr5 148677465 148679178 -3858081 - ORR1A2-int LTR MaLR 0 1963 141 4 1719 675 193 58 15 chr5 148679356 148679493 -3857766 - B1_Mus1 SINE Alu -5 143 1 4 1719 236 283 0 0 chr5 148679522 148679582 -3857677 - tRNA-Ala-GCY_ tRNA tRNA -14 61 2 4 1719 573 156 194 30 chr5 148680375 148680540 -3856719 - B2_Mm2 SINE B2 -2 193 2 4 1719 599 226 48 54 chr5 148680641 148680809 -3856450 + B4A SINE B4 126 292 0 4 1719 444 211 18 72 chr5 148681553 148681692 -3855567 - B1_Mur1 SINE Alu -8 141 12 4 1719 1246 27 0 39 chr5 148682430 148682583 -3854676 + B1_Mus2 SINE Alu 1 147 0 4 1719 386 286 9 37 chr5 148682772 148682881 -3854378 - B3 SINE B2 -103 113 8 4 1719 272 266 10 31 chr5 148684904 148685001 -3852258 - LTR40b LTR ERVL -29 433 339 4 1719 369 0 0 0 chr5 148685218 148685259 -3852000 + (TG)n Simple_repeat Simple_repeat 2 42 0 4 1719 219 175 7 110 chr5 148685419 148685573 -3851686 + (CAGA)n Simple_repeat Simple_repeat 3 140 0 4 1719 198 136 0 0 chr5 148686713 148686757 -3850502 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 4 1719 784 261 51 14 chr5 148687811 148688025 -3849234 - Tigger7 DNA MER2_type -8 2483 2262 4 1719 257 259 14 0 chr5 148688368 148688438 -3848821 - ID2 SINE ID -4 79 9 4 1719 183 293 34 17 chr5 148688484 148688543 -3848716 + MIRb SINE MIR 117 176 -92 4 1719 330 289 275 9 chr5 148688663 148688894 -3848365 + B4 SINE B4 1 292 0 4 1719 936 180 24 0 chr5 148689166 148689333 -3847926 + B3 SINE B2 2 172 -44 4 1719 180 261 130 0 chr5 148690152 148690221 -3847038 - MIRb SINE MIR -72 196 119 4 1719 289 232 297 23 chr5 148691573 148691701 -3845558 + ID_B1 SINE B4 1 163 -61 4 1719 816 140 51 96 chr5 148692504 148692701 -3844558 + B2_Mm2 SINE B2 2 189 -6 4 1719 1105 43 65 7 chr5 148692705 148692844 -3844415 + B1_Mus1 SINE Alu 1 147 -1 4 1719 22 0 0 0 chr5 148692861 148692883 -3844376 + AT_rich Low_complexity Low_complexity 1 22 0 4 1719 1124 173 38 9 chr5 148693321 148693531 -3843728 - B3 SINE B2 0 216 1 4 1719 1915 159 17 14 chr5 148693674 148694019 -3843240 + ORR1B1 LTR MaLR 41 386 -8 4 1719 1245 55 0 0 chr5 148694445 148694591 -3842668 + B1_Mm SINE Alu 2 147 0 4 1719 389 284 61 71 chr5 148694896 148695093 -3842166 + MER2 DNA MER2_type 97 291 -54 4 1719 257 364 7 65 chr5 148695206 148695359 -3841900 - MER115 DNA Tip100 -161 532 389 4 1719 242 325 99 59 chr5 148695428 148695650 -3841609 - MER115 DNA Tip100 -451 242 12 4 1719 324 0 0 0 chr5 148696191 148696227 -3841032 + (TG)n Simple_repeat Simple_repeat 2 37 0 4 1719 317 219 11 58 chr5 148696280 148696367 -3840892 - B3A SINE B2 -112 83 1 4 1719 24 32 0 0 chr5 148696376 148696407 -3840852 + AT_rich Low_complexity Low_complexity 1 31 0 4 1719 421 221 0 50 chr5 148696564 148696664 -3840595 - B1_Mur1 SINE Alu -22 127 33 4 1719 1051 76 7 14 chr5 148696673 148696820 -3840439 - B1_Mus1 SINE Alu 0 148 3 4 1719 199 289 175 15 chr5 148696983 148697120 -3840139 - MIRb SINE MIR -23 245 87 4 1719 2562 83 3 6 chr5 148698887 148699215 -3838044 - ORR1A2 LTR MaLR 0 327 1 4 1719 1016 230 5 5 chr5 148699491 148699679 -3837580 + B3 SINE B2 1 188 -28 4 1719 501 47 0 0 chr5 148699679 148699743 -3837516 + (CA)n Simple_repeat Simple_repeat 2 65 0 4 1719 888 149 7 20 chr5 148699780 148699959 -3837300 + B3 SINE B2 6 176 -19 4 1719 224 323 76 15 chr5 148700103 148700235 -3837024 + L2a LINE L2 3282 3421 -5 4 1719 300 50 0 0 chr5 148700630 148700643 -3836616 + (T)n Simple_repeat Simple_repeat 1 13 0 4 1719 1722 16 0 10 chr5 148700643 148700838 -3836421 - B2_Mm1a SINE B2 0 193 1 4 1719 300 50 0 0 chr5 148700838 148700864 -3836395 + (T)n Simple_repeat Simple_repeat 1 26 0 4 1719 1062 198 66 0 chr5 148700945 148701142 -3836117 + B3 SINE B2 5 214 -2 4 1719 1920 115 139 30 chr5 148701431 148701714 -3835545 + ORR1B2 LTR MaLR 1 323 -44 4 1719 1452 74 5 16 chr5 148701714 148701906 -3835353 + B2_Mm1t SINE B2 1 190 -3 4 1719 1920 115 139 30 chr5 148701906 148701953 -3835306 + ORR1B2 LTR MaLR 324 367 0 4 1719 267 152 0 0 chr5 148701954 148702000 -3835259 + (CA)n Simple_repeat Simple_repeat 2 47 0 4 1719 234 0 0 0 chr5 148702000 148702026 -3835233 + (TATG)n Simple_repeat Simple_repeat 4 29 0 4 1719 399 262 151 73 chr5 148702123 148702329 -3834930 - ID_B1 SINE B4 -1 223 2 4 1719 516 239 17 26 chr5 148702329 148702445 -3834814 - PB1D10 SINE Alu -2 115 1 4 1719 248 276 31 101 chr5 148702445 148702491 -3834768 - MT2B2 LTR ERVL -425 159 123 4 1719 1455 196 133 25 chr5 148702552 148702913 -3834346 + MTD LTR MaLR 18 417 -2 4 1719 1236 41 7 0 chr5 148703042 148703188 -3834071 - B1_Mus2 SINE Alu 0 147 1 4 1719 180 0 0 0 chr5 148703419 148703439 -3833820 + (TCCTG)n Simple_repeat Simple_repeat 3 22 0 4 1719 186 103 0 0 chr5 148703477 148703506 -3833753 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 5 1719 983 149 0 7 chr5 148703600 148703749 -3833510 + B1_Mur3 SINE Alu 2 149 0 5 1719 214 296 0 14 chr5 148704118 148704190 -3833069 - BC1_Mm scRNA scRNA -67 85 15 5 1719 257 200 0 24 chr5 148704193 148704275 -3832984 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 5 1719 447 149 161 0 chr5 148704301 148704388 -3832871 - PB1D10 SINE Alu -2 115 15 5 1719 387 0 0 0 chr5 148705278 148705321 -3831938 + (TG)n Simple_repeat Simple_repeat 1 43 0 5 1719 303 93 0 0 chr5 148706707 148706750 -3830509 + (TAA)n Simple_repeat Simple_repeat 3 45 0 5 1719 446 260 182 8 chr5 148706924 148707082 -3830177 - B3A SINE B2 -10 185 3 5 1719 388 297 64 13 chr5 148707287 148707444 -3829815 - MER90a LTR ERV1 -160 454 290 5 1719 1074 107 6 11 chr5 148707768 148707947 -3829312 + (TTC)n Simple_repeat Simple_repeat 3 180 0 5 1719 519 98 11 21 chr5 148707947 148708041 -3829218 + (TCC)n Simple_repeat Simple_repeat 3 95 0 5 1719 1361 52 0 17 chr5 148708042 148708217 -3829042 - B2_Mm2 SINE B2 -18 177 6 5 1719 586 331 99 8 chr5 148708345 148708607 -3828652 - MLT1I LTR MaLR -85 326 41 5 1719 239 208 132 0 chr5 148708797 148708850 -3828409 + PB1D10 SINE Alu 49 108 -9 5 1719 204 40 0 0 chr5 148708850 148708875 -3828384 + (CCA)n Simple_repeat Simple_repeat 1 25 0 5 1719 789 255 0 7 chr5 148709139 148709289 -3827970 + RSINE1 SINE B4 4 152 -13 5 1719 548 224 80 9 chr5 148710011 148710201 -3827058 + RMER17C LTR ERVK 15 394 -512 5 1719 3383 38 5 2 chr5 148710203 148710602 -3826657 + MTB LTR MaLR 1 400 0 5 1719 369 0 0 0 chr5 148711292 148711333 -3825926 + (TG)n Simple_repeat Simple_repeat 2 42 0 5 1719 200 303 13 13 chr5 148711457 148711534 -3825725 + L2 LINE L2 2846 2922 -497 5 1719 1578 186 155 3 chr5 148711825 148712186 -3825073 - MTD LTR MaLR 0 419 4 5 1719 580 234 55 0 chr5 148712451 148712579 -3824680 + B3 SINE B2 74 208 -8 5 1719 825 246 41 0 chr5 148713028 148713223 -3824036 + B3 SINE B2 1 203 -13 5 1719 22 35 0 0 chr5 148713252 148713281 -3823978 + AT_rich Low_complexity Low_complexity 1 29 0 5 1719 617 194 350 0 chr5 148713443 148713603 -3823656 + B3 SINE B2 1 216 0 5 1719 1163 129 124 0 chr5 148713943 148714136 -3823123 - URR1B DNA MER1_type -6 219 3 5 1719 1091 63 28 7 chr5 148715457 148715601 -3821658 + B1_Mus2 SINE Alu 1 147 0 5 1719 443 333 87 5 chr5 148715618 148715644 -3821615 + MER2 DNA MER2_type 86 111 -234 5 1719 1166 0 0 7 chr5 148715644 148715779 -3821480 + (TTC)n Simple_repeat Simple_repeat 3 136 0 5 1719 443 333 87 5 chr5 148715779 148715948 -3821311 + MER2 DNA MER2_type 112 296 -49 5 1719 222 37 0 0 chr5 148716032 148716059 -3821200 + (TC)n Simple_repeat Simple_repeat 2 28 0 5 1719 1406 61 0 42 chr5 148716067 148716256 -3821003 - B2_Mm2 SINE B2 -14 181 1 5 1719 210 71 0 0 chr5 148716405 148716433 -3820826 + (CTG)n Simple_repeat Simple_repeat 2 29 0 5 1719 187 130 0 36 chr5 148716448 148716504 -3820755 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 5 1719 788 255 0 0 chr5 148716509 148716662 -3820597 - RSINE1 SINE B4 -10 155 3 5 1719 462 221 9 46 chr5 148716751 148716860 -3820399 - RLTR20C LTR ERVK 0 551 447 5 1719 322 231 0 37 chr5 148716886 148716900 -3820359 - RLTR20C LTR ERVK -90 478 465 5 1719 843 129 0 0 chr5 148716900 148717078 -3820181 + (CA)n Simple_repeat Simple_repeat 2 179 0 5 1719 1158 192 95 49 chr5 148717078 148717426 -3819833 - RLTR20C LTR ERVK -104 464 4 5 1719 437 200 15 5 chr5 148717749 148717963 -3819296 + (TG)n Simple_repeat Simple_repeat 1 216 0 5 1719 25 0 0 0 chr5 148718734 148718759 -3818500 + GC_rich Low_complexity Low_complexity 1 25 0 5 1719 653 242 38 19 chr5 148718834 148718999 -3818260 + B3 SINE B2 46 212 -4 5 1719 724 223 49 78 chr5 148719832 148720036 -3817223 - B3A SINE B2 0 198 1 5 1719 694 247 186 20 chr5 148720120 148720368 -3816891 - B4 SINE B4 -2 290 2 5 1719 1684 26 0 10 chr5 148720417 148720611 -3816648 + B2_Mm1a SINE B2 2 193 0 5 1719 2314 211 29 12 chr5 148720657 148721169 -3816090 - RLTR11A2 LTR ERVK -6 521 1 5 1719 226 295 61 76 chr5 148721802 148721934 -3815325 + MLT1J LTR MaLR 288 417 -95 5 1719 524 0 45 0 chr5 148721937 148722003 -3815256 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 5 1719 1133 67 149 24 chr5 148722027 148722195 -3815064 - B2_Mm2 SINE B2 -5 190 2 5 1719 831 250 11 0 chr5 148722512 148722692 -3814567 - B3 SINE B2 -30 186 5 5 1719 242 333 0 0 chr5 148722726 148722789 -3814470 - ID4_ SINE ID -16 67 5 5 1719 263 93 0 23 chr5 148723312 148723356 -3813903 + (CCCCCA)n Simple_repeat Simple_repeat 6 48 0 5 1719 449 289 117 61 chr5 148723615 148723829 -3813430 - RMER15 LTR ERVL -14 561 336 5 1719 1622 161 79 66 chr5 148724046 148724277 -3812982 - RMER10B LTR ERVL 0 398 147 5 1719 1376 23 0 6 chr5 148724277 148724450 -3812809 + (GGAGA)n Simple_repeat Simple_repeat 4 175 0 5 1719 1622 161 79 66 chr5 148724450 148724611 -3812648 - RMER10B LTR ERVL -252 146 1 5 1719 267 265 172 10 chr5 148725138 148725237 -3812022 - MLT1B LTR MaLR -80 310 196 5 1719 495 0 0 0 chr5 148725612 148725667 -3811592 + (TC)n Simple_repeat Simple_repeat 1 55 0 5 1719 447 228 18 0 chr5 148725737 148725845 -3811414 + PB1D10 SINE Alu 1 110 -7 5 1719 243 0 0 0 chr5 148725845 148725872 -3811387 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 5 1719 189 0 0 0 chr5 148725892 148725913 -3811346 + (CAAAC)n Simple_repeat Simple_repeat 4 24 0 5 1719 183 80 0 0 chr5 148727205 148727230 -3810029 + (CATG)n Simple_repeat Simple_repeat 2 26 0 5 1719 561 252 49 7 chr5 148727235 148727379 -3809880 - B3A SINE B2 -47 151 2 5 1719 1064 129 196 6 chr5 148727539 148727718 -3809541 - B3 SINE B2 -3 213 1 5 1719 397 143 0 54 chr5 148727863 148727937 -3809322 - B3A SINE B2 -127 71 2 5 1719 495 0 0 0 chr5 148728193 148728248 -3809011 + (CA)n Simple_repeat Simple_repeat 2 56 0 5 1719 486 103 0 0 chr5 148728248 148728335 -3808924 + (GA)n Simple_repeat Simple_repeat 1 87 0 5 1719 385 225 159 18 chr5 148728351 148728464 -3808795 - ID_B1 SINE B4 -2 222 94 5 1719 483 294 87 57 chr5 148728554 148728866 -3808393 - L1MB1 LINE L1 -147 6036 5687 5 1719 1472 80 0 5 chr5 148728866 148729055 -3808204 - B2_Mm2 SINE B2 -7 188 1 5 1719 483 312 68 77 chr5 148729055 148729195 -3808064 - L1MB1 LINE L1 -485 5686 5553 5 1719 405 0 0 0 chr5 148729195 148729240 -3808019 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1719 1081 80 7 0 chr5 148729240 148729377 -3807882 - B1_Mus1 SINE Alu -9 139 2 5 1719 483 312 68 77 chr5 148729377 148729456 -3807803 - L1MB1 LINE L1 -619 5552 5475 5 1719 499 206 12 12 chr5 148730442 148730604 -3806655 - Lx9 LINE L1 -2 7642 7481 5 1719 558 175 40 18 chr5 148730616 148731073 -3806186 + (CATATA)n Simple_repeat Simple_repeat 1 467 0 5 1719 1475 223 25 25 chr5 148731073 148731399 -3805860 - Lx9 LINE L1 -133 7511 7186 5 1719 820 201 3 2 chr5 148731398 148731566 -3805693 + Lx9 LINE L1 6899 7199 -445 5 1719 211 239 95 95 chr5 148731866 148731940 -3805319 - ID4_ SINE ID -9 74 1 5 1719 426 292 0 40 chr5 148732322 148732422 -3804837 - PB1D10 SINE Alu -7 110 15 5 1719 213 294 200 8 chr5 148732422 148732436 -3804823 - B4A SINE B4 -66 191 84 5 1719 810 284 130 32 chr5 148733188 148733526 -3803733 - MER57E1 LTR ERV1 -1 371 1 5 1719 333 268 98 45 chr5 148733664 148733797 -3803462 + MLT1I LTR MaLR 7 146 -265 5 1719 255 218 0 18 chr5 148733923 148733979 -3803280 + C-rich Low_complexity Low_complexity 2 56 0 5 1719 399 21 0 0 chr5 148733990 148734038 -3803221 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1719 1316 86 21 11 chr5 148734397 148734586 -3802673 - B2_Mm2 SINE B2 -3 192 2 5 1719 667 203 0 8 chr5 148734660 148734779 -3802480 + B1_Mur1 SINE Alu 5 122 -27 5 1719 438 259 32 120 chr5 148734779 148734813 -3802446 + ID_B1 SINE B4 86 224 0 5 1719 522 0 0 0 chr5 148734848 148734906 -3802353 + (CA)n Simple_repeat Simple_repeat 2 59 0 5 1719 180 270 98 53 chr5 148735088 148735221 -3802038 + MIRc SINE MIR 104 242 -26 5 1719 279 269 94 56 chr5 148735280 148735450 -3801809 + MIR SINE MIR 84 250 -18 5 1719 386 86 20 0 chr5 148735865 148735930 -3801329 + B1_Mus1 SINE Alu 14 83 -67 5 1719 213 39 0 0 chr5 148735962 148735988 -3801271 + (CAA)n Simple_repeat Simple_repeat 2 27 0 5 1719 1162 96 35 60 chr5 148736030 148736230 -3801029 - B2_Mm2 SINE B2 0 195 1 5 1719 328 401 44 20 chr5 148736238 148736490 -3800769 + LTR31 LTR ERV1 172 429 -190 5 1719 263 302 78 14 chr5 148736570 148736711 -3800548 - RMER17C LTR ERVK -59 351 202 5 1719 315 0 0 0 chr5 148736728 148736763 -3800496 + (TG)n Simple_repeat Simple_repeat 1 35 0 5 1719 446 0 19 0 chr5 148736763 148736816 -3800443 + (GA)n Simple_repeat Simple_repeat 1 55 0 5 1719 319 186 0 17 chr5 148736956 148737016 -3800243 + MER31B LTR ERV1 61 119 -366 5 1719 531 0 0 0 chr5 148737024 148737083 -3800176 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1719 303 96 0 0 chr5 148737084 148737136 -3800123 + (GA)n Simple_repeat Simple_repeat 1 52 0 5 1719 323 264 65 9 chr5 148737162 148737269 -3799990 + MER31B LTR ERV1 226 338 -128 5 1719 189 0 0 0 chr5 148737900 148737921 -3799338 + (CCTG)n Simple_repeat Simple_repeat 4 24 0 5 1719 1236 34 7 0 chr5 148738551 148738698 -3798561 - B1_Mur3 SINE Alu 0 149 2 5 1719 519 73 0 0 chr5 148738743 148738811 -3798448 - B1_Mus1 SINE Alu -79 69 2 5 1719 795 208 15 80 chr5 148738811 148738955 -3798304 - RLTR11A2 LTR ERVK -94 434 304 5 1719 722 93 9 0 chr5 148738955 148739063 -3798196 + (TTC)n Simple_repeat Simple_repeat 2 110 0 5 1719 21 0 0 0 chr5 148739136 148739157 -3798102 + AT_rich Low_complexity Low_complexity 1 21 0 5 1719 279 21 41 20 chr5 148739188 148739237 -3798022 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 5 1719 1166 55 0 27 chr5 148739237 148739376 -3797883 - B1_Mus1 SINE Alu -9 139 1 6 1719 1235 147 137 48 chr5 148739376 148739640 -3797619 - RLTR11A2 LTR ERVK -238 289 2 5 1719 746 140 9 9 chr5 148739884 148739999 -3797260 - B3 SINE B2 -98 118 4 6 1719 1263 99 0 0 chr5 148740025 148740320 -3796939 + (CA)n Simple_repeat Simple_repeat 1 295 0 6 1719 534 210 18 50 chr5 148740592 148740751 -3796508 - B3 SINE B2 -1 215 2 6 1719 919 175 62 0 chr5 148740775 148740952 -3796307 + B2_Mm2 SINE B2 2 189 -6 6 1719 218 42 104 0 chr5 148741182 148741230 -3796029 + (CCG)n Simple_repeat Simple_repeat 2 54 0 6 1719 828 197 74 0 chr5 148741330 148741533 -3795726 - Lx9 LINE L1 -284 7360 7143 6 1719 1213 48 0 13 chr5 148741854 148742003 -3795256 - B1_Mm SINE Alu 0 147 1 6 1719 212 171 0 0 chr5 148742162 148742203 -3795056 + T-rich Low_complexity Low_complexity 1 41 0 6 1719 399 192 45 26 chr5 148742563 148742685 -3794574 + B3A SINE B2 1 162 -54 6 1719 450 0 0 0 chr5 148742685 148742735 -3794524 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1719 534 331 76 18 chr5 148742761 148743397 -3793862 + L1_Mur3 LINE L1 2741 3587 -2293 6 1719 808 199 7 14 chr5 148743415 148743563 -3793696 + B1_Mus1 SINE Alu 2 148 0 6 1719 802 262 104 48 chr5 148743573 148744005 -3793254 + L1M3 LINE L1 3044 3505 -2638 6 1719 270 0 0 0 chr5 148744005 148744035 -3793224 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 6 1719 802 262 104 48 chr5 148744035 148744083 -3793176 + L1M3 LINE L1 3506 3551 -2592 6 1719 234 0 0 0 chr5 148744083 148744109 -3793150 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 6 1719 366 80 0 0 chr5 148744109 148744159 -3793100 + (TTTTC)n Simple_repeat Simple_repeat 4 53 0 6 1719 1498 292 22 25 chr5 148744558 148745113 -3792146 + L1M3 LINE L1 3533 4085 -2055 6 1719 1126 57 7 0 chr5 148745144 148745285 -3791974 + B1_Mus2 SINE Alu 1 142 -5 6 1719 1209 48 0 14 chr5 148745461 148745608 -3791651 - B1_Mus2 SINE Alu -2 145 1 6 1719 1073 276 50 77 chr5 148745608 148746005 -3791254 + MTD LTR MaLR 1 385 -34 6 1719 342 0 0 0 chr5 148746005 148746043 -3791216 + (TG)n Simple_repeat Simple_repeat 2 39 0 6 1719 1073 276 50 77 chr5 148746043 148746061 -3791198 + MTD LTR MaLR 386 404 -15 6 1719 342 115 0 0 chr5 148746415 148746467 -3790792 + (TG)n Simple_repeat Simple_repeat 1 52 0 6 1719 198 91 0 0 chr5 148746735 148746768 -3790491 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 6 1719 198 71 0 0 chr5 148746997 148747025 -3790234 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 6 1719 1015 181 44 34 chr5 148747407 148747613 -3789646 - B3 SINE B2 0 216 9 6 1719 793 264 43 16 chr5 148748385 148748570 -3788689 + MTD LTR MaLR 65 254 -165 6 1719 362 145 16 31 chr5 148748558 148748622 -3788637 + MTD LTR MaLR 356 418 -1 6 1719 1495 54 5 0 chr5 148748931 148749115 -3788144 + B2_Mm1t SINE B2 1 185 -8 6 1719 384 22 0 0 chr5 148749157 148749202 -3788057 + (TA)n Simple_repeat Simple_repeat 1 45 0 6 1719 417 249 76 66 chr5 148749279 148749477 -3787782 + RMER15 LTR ERVL 1 200 -375 6 1719 464 316 99 4 chr5 148749687 148749919 -3787340 - L1MA4 LINE L1 -153 6147 5894 6 1719 852 220 120 171 chr5 148750137 148750570 -3786689 - MTD LTR MaLR -4 415 5 6 1719 585 303 89 32 chr5 148750841 148751145 -3786114 - MLT1E LTR MaLR -15 638 219 6 1719 533 202 198 23 chr5 148751350 148751522 -3785737 - MLT1B LTR MaLR -121 269 68 6 1719 809 265 75 11 chr5 148752104 148752291 -3784968 + B3 SINE B2 1 199 -17 6 1719 1821 125 22 123 chr5 148752294 148752489 -3784770 - ORR1A4 LTR MaLR 0 329 128 6 1719 497 127 0 0 chr5 148752489 148752560 -3784699 - ID2 SINE ID -12 71 1 6 1719 1821 125 22 123 chr5 148752560 148752730 -3784529 - ORR1A4 LTR MaLR -202 127 1 6 1719 632 289 30 5 chr5 148752744 148752942 -3784317 + Lx9 LINE L1 7222 7424 -220 6 1719 921 187 4 32 chr5 148752953 148753216 -3784043 + RMER19B LTR ERVK 1 220 -682 6 1719 1686 16 0 15 chr5 148753301 148753496 -3783763 + B2_Mm1a SINE B2 2 193 0 6 1719 779 67 194 6 chr5 148753506 148753666 -3783593 + B2_Mm2 SINE B2 6 195 0 6 1719 360 60 29 29 chr5 148754258 148754327 -3782932 + (CCAA)n Simple_repeat Simple_repeat 1 69 0 6 1719 214 68 0 64 chr5 148754416 148754463 -3782796 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 6 1719 1976 173 87 36 chr5 148754635 148755084 -3782175 - RLTR28B LTR ERVL -1 480 9 6 1719 595 221 35 0 chr5 148755185 148755298 -3781961 - B1_Mur1 SINE Alu -1 148 32 6 1719 343 65 0 46 chr5 148755387 148755452 -3781807 + (CAAA)n Simple_repeat Simple_repeat 1 62 0 6 1719 366 284 69 0 chr5 148756583 148756699 -3780560 + MER45C DNA Tip100 67 190 -763 6 1719 236 215 111 25 chr5 148756880 148756961 -3780298 + MER45C DNA Tip100 757 844 -109 6 1719 821 162 21 0 chr5 148757120 148757262 -3779997 + B1_Mur2 SINE Alu 5 149 0 6 1719 1234 28 14 0 chr5 148757496 148757641 -3779618 + B1_Mm SINE Alu 1 147 0 6 1719 451 194 26 6 chr5 148757711 148758057 -3779202 + (TG)n Simple_repeat Simple_repeat 1 353 0 6 1719 1565 199 121 11 chr5 148758226 148758591 -3778668 + MTD LTR MaLR 14 418 -1 6 1719 702 304 24 0 chr5 148759092 148759260 -3777999 - B3A SINE B2 -26 172 1 6 1719 21 36 0 0 chr5 148759285 148759313 -3777946 + AT_rich Low_complexity Low_complexity 1 28 0 6 1719 655 240 183 0 chr5 148759313 148759488 -3777771 - B3 SINE B2 -9 207 1 6 1719 244 188 0 55 chr5 148759491 148759534 -3777725 + (TTA)n Simple_repeat Simple_repeat 1 42 0 6 1719 593 148 235 0 chr5 148759534 148759649 -3777610 - B1_Mus2 SINE Alu -5 142 1 6 1719 244 188 0 55 chr5 148759649 148759659 -3777600 + (TTA)n Simple_repeat Simple_repeat 1 9 0 6 1719 793 140 80 14 chr5 148759659 148759797 -3777462 - B1_Mur3 SINE Alu -1 148 2 6 1719 244 188 0 55 chr5 148759797 148759815 -3777444 + (TTA)n Simple_repeat Simple_repeat 1 18 0 6 1719 1067 67 0 0 chr5 148760530 148760664 -3776595 + B1_Mus1 SINE Alu 1 134 -14 6 1719 260 27 0 26 chr5 148760664 148760702 -3776557 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 6 1719 567 0 0 0 chr5 148760749 148760812 -3776447 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 6 1719 1159 181 11 5 chr5 148760812 148761001 -3776258 - B3 SINE B2 -13 203 14 6 1719 22 35 0 0 chr5 148761073 148761102 -3776157 + AT_rich Low_complexity Low_complexity 1 29 0 6 1719 234 0 0 0 chr5 148762126 148762152 -3775107 + (TC)n Simple_repeat Simple_repeat 1 26 0 6 1719 483 95 0 0 chr5 148762152 148762225 -3775034 + (CA)n Simple_repeat Simple_repeat 1 74 0 6 1719 210 184 0 0 chr5 148762237 148762275 -3774984 + B4A SINE B4 2 39 -253 6 1719 899 94 31 8 chr5 148762375 148762504 -3774755 - B1_Mur4 SINE Alu -7 143 12 6 1719 1299 92 27 16 chr5 148762515 148762702 -3774557 - B2_Mm2 SINE B2 -1 194 6 6 1719 478 120 119 12 chr5 148763137 148763221 -3774038 + B1_Mus1 SINE Alu 1 93 -55 6 1719 441 0 0 0 chr5 148763227 148763276 -3773983 + (CCAA)n Simple_repeat Simple_repeat 3 51 0 6 1719 1206 62 0 33 chr5 148763875 148764059 -3773200 + (TCTCCC)n Simple_repeat Simple_repeat 3 180 0 6 1719 460 307 103 46 chr5 148764356 148764562 -3772697 - L1MB3 LINE L1 -67 6116 5911 6 1719 916 184 0 0 chr5 148764562 148764709 -3772550 - B1_Mus2 SINE Alu 0 147 1 6 1719 460 307 103 46 chr5 148764709 148764871 -3772388 - L1MB3 LINE L1 -273 5910 5727 6 1719 3735 60 25 2 chr5 148764995 148765480 -3771779 + LTRIS2 LTR ERV1 69 564 0 6 1719 262 350 80 59 chr5 148765510 148765723 -3771536 + LTR16E1 LTR ERVL 207 424 -114 6 1719 892 163 224 15 chr5 148765723 148766008 -3771251 - ORR1C2 LTR MaLR 0 384 25 6 1719 2171 129 84 8 chr5 148766012 148766371 -3770888 - ORR1B1 LTR MaLR -8 386 1 6 1719 251 164 81 16 chr5 148766431 148766493 -3770766 + LTR16E1 LTR ERVL 449 514 -24 6 1720 242 56 28 0 chr5 148766737 148766773 -3770486 + (CAAT)n Simple_repeat Simple_repeat 2 38 0 6 1720 1266 82 17 6 chr5 148766858 148767030 -3770229 - B2_Mm2 SINE B2 -20 175 2 6 1720 788 262 40 84 chr5 148767073 148767348 -3769911 + MTEa LTR MaLR 1 263 -116 6 1720 215 184 40 20 chr5 148768427 148768477 -3768782 + PB1D9 SINE Alu 25 75 -45 6 1720 1290 55 0 0 chr5 148770979 148771451 -3765808 + (CA)n Simple_repeat Simple_repeat 1 472 0 6 1720 210 71 0 0 chr5 148771875 148771903 -3765356 + (TTA)n Simple_repeat Simple_repeat 1 28 0 6 1720 1199 100 0 0 chr5 148771903 148772063 -3765196 - B2_Mm2 SINE B2 -34 161 2 6 1720 1106 72 134 18 chr5 148772067 148772238 -3765021 - B2_Mm1t SINE B2 -2 191 1 6 1720 279 128 0 0 chr5 148772245 148772257 -3765002 + (TTTC)n Simple_repeat Simple_repeat 1 12 0 6 1720 1065 145 0 0 chr5 148772257 148772436 -3764823 + (TC)n Simple_repeat Simple_repeat 2 180 0 6 1720 279 128 0 0 chr5 148772436 148772470 -3764789 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 6 1720 973 191 79 0 chr5 148772474 148772663 -3764596 - B3 SINE B2 -8 208 5 6 1720 759 274 63 70 chr5 148773583 148773870 -3763389 + MER67B LTR ERV1 208 492 -169 6 1720 256 143 18 18 chr5 148773924 148773981 -3763278 + CT-rich Low_complexity Low_complexity 1 57 0 6 1720 782 162 15 15 chr5 148773983 148774115 -3763144 - B1_Mur2 SINE Alu -9 140 9 6 1720 338 253 109 98 chr5 148774019 148774212 -3763047 - MT2B LTR ERVL -344 257 63 6 1720 345 263 241 5 chr5 148774218 148774413 -3762846 - L2a LINE L2 -50 3376 3136 6 1720 786 144 0 0 chr5 148775448 148775566 -3761693 + B1_Mur2 SINE Alu 21 138 -11 6 1720 1339 135 24 14 chr5 148776472 148776683 -3760576 - B3 SINE B2 0 216 4 6 1720 205 118 0 38 chr5 148777006 148777059 -3760200 + A-rich Low_complexity Low_complexity 2 52 0 6 1720 444 301 164 29 chr5 148777126 148777297 -3759962 - RMER30 DNA MER1_type -1 201 8 6 1720 255 326 156 0 chr5 148777568 148777703 -3759556 - MER33 DNA MER1_type 0 324 169 6 1720 222 238 24 0 chr5 148777714 148777756 -3759503 - RSINE1 SINE B4 -28 137 95 6 1720 652 175 0 0 chr5 148777833 148777947 -3759312 - B1_Mus2 SINE Alu -1 146 33 7 1720 250 277 45 67 chr5 148777946 148778035 -3759224 - MER33 DNA MER1_type -203 121 35 6 1720 761 283 83 26 chr5 148779161 148779426 -3757833 - B4 SINE B4 -12 280 1 7 1720 1223 41 0 0 chr5 148779761 148779907 -3757352 + B1_Mus1 SINE Alu 3 148 0 7 1720 23 0 0 0 chr5 148780750 148780773 -3756486 + AT_rich Low_complexity Low_complexity 1 23 0 7 1720 189 183 104 78 chr5 148781367 148781444 -3755815 - L2 LINE L2 -1118 2301 2223 7 1720 353 309 66 38 chr5 148781996 148782071 -3755188 + ID_B1 SINE B4 6 222 -1 7 1720 537 261 44 15 chr5 148782071 148782207 -3755052 + B1F SINE Alu 10 149 0 7 1720 357 264 11 11 chr5 148782376 148782464 -3754795 - MER91B DNA Tip100 -15 175 88 7 1720 525 305 40 20 chr5 148782468 148782669 -3754590 - Zaphod2 DNA Tip100 -3319 205 1 7 1720 846 221 138 10 chr5 148782931 148783257 -3754002 + MTD LTR MaLR 18 377 -2 7 1720 758 72 0 0 chr5 148783484 148783581 -3753678 + B2_Mm2 SINE B2 6 102 -93 7 1720 982 268 115 8 chr5 148783719 148783979 -3753280 + B4A SINE B4 1 288 -4 7 1720 493 140 221 39 chr5 148784993 148785097 -3752162 + URR1A DNA MER1_type 1 123 -103 7 1720 996 69 84 23 chr5 148785097 148785284 -3751975 + B2_Mm2 SINE B2 2 193 0 7 1720 648 167 26 0 chr5 148785289 148785403 -3751856 + URR1A DNA MER1_type 109 225 -1 7 1720 584 231 39 34 chr5 148785463 148785642 -3751617 - RMER13B LTR ERVK -4 904 725 7 1720 2540 221 32 91 chr5 148785619 148786370 -3750889 - RMER17B LTR ERVK -251 707 1 7 1720 2182 191 19 19 chr5 148786514 148786926 -3750333 - MTC LTR MaLR -8 413 2 7 1720 180 111 0 0 chr5 148787117 148787144 -3750115 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 7 1720 595 267 73 7 chr5 148787275 148787426 -3749833 + RSINE1 SINE B4 1 161 -4 7 1720 1131 189 26 111 chr5 148787514 148787866 -3749393 - RLTRETN_Mm LTR ERVK 0 322 1 7 1720 3519 30 2 0 chr5 148788513 148788912 -3748347 - MTB LTR MaLR 0 400 1 7 1720 227 209 0 65 chr5 148789600 148789692 -3747567 + T-rich Low_complexity Low_complexity 5 90 0 7 1720 23 0 0 0 chr5 148789714 148789737 -3747522 + AT_rich Low_complexity Low_complexity 1 23 0 7 1720 323 268 23 23 chr5 148789742 148789830 -3747429 - B1F1 SINE Alu -52 97 10 7 1720 2511 175 22 171 chr5 148790099 148790388 -3746871 - RMER19C LTR ERVK 0 611 325 7 1720 1201 22 0 0 chr5 148790388 148790525 -3746734 + B1_Mm SINE Alu 1 137 -10 7 1720 378 0 0 0 chr5 148790525 148790567 -3746692 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 7 1720 2511 175 22 171 chr5 148790567 148790994 -3746265 - RMER19C LTR ERVK -287 324 2 7 1720 213 39 0 0 chr5 148790995 148791021 -3746238 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1720 923 44 0 0 chr5 148791021 148791135 -3746124 - B1_Mm SINE Alu 0 147 34 7 1720 575 256 121 20 chr5 148791254 148791453 -3745806 - MTE2b LTR MaLR 0 379 161 7 1720 1145 200 15 5 chr5 148791481 148791687 -3745572 - B3 SINE B2 0 216 9 7 1720 699 265 33 70 chr5 148791651 148791866 -3745393 - MTE2b LTR MaLR -172 207 1 7 1720 410 212 196 104 chr5 148793319 148793482 -3743777 + MTE2a LTR MaLR 146 323 -56 7 1720 1455 40 0 11 chr5 148793975 148794150 -3743109 + B2_Mm1a SINE B2 2 174 -19 7 1720 357 24 0 0 chr5 148794295 148794337 -3742922 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1720 270 39 58 19 chr5 148794547 148794599 -3742660 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 7 1720 1616 226 45 11 chr5 148794877 148795345 -3741914 - MT2A LTR ERVL -5 528 1 7 1720 504 217 0 0 chr5 148795350 148795493 -3741766 + (CA)n Simple_repeat Simple_repeat 2 144 0 7 1720 920 101 47 0 chr5 148795750 148795879 -3741380 + B1_Mus1 SINE Alu 1 135 -13 7 1720 243 0 0 0 chr5 148795879 148795906 -3741353 + (CAA)n Simple_repeat Simple_repeat 1 27 0 7 1720 237 65 0 0 chr5 148796224 148796255 -3741004 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 7 1720 201 308 64 0 chr5 148796270 148796348 -3740911 + L2 LINE L2 2977 3059 -360 7 1720 346 283 29 137 chr5 148797217 148797356 -3739903 - RMER10B LTR ERVL -3 395 272 7 1720 1068 224 167 6 chr5 148797792 148798103 -3739156 + MTD LTR MaLR 47 399 -20 7 1720 244 289 188 22 chr5 148798287 148798405 -3738854 + Charlie7 DNA MER1_type 342 484 -2128 7 1720 758 233 42 65 chr5 148798405 148798621 -3738638 + B3 SINE B2 2 212 -4 7 1720 244 289 188 22 chr5 148798621 148798640 -3738619 + Charlie7 DNA MER1_type 485 502 -2110 7 1720 2056 146 38 56 chr5 148798875 148799266 -3737993 + ORR1C2 LTR MaLR 1 384 0 7 1720 990 95 44 0 chr5 148799313 148799450 -3737809 - B1_Mus1 SINE Alu 0 148 6 7 1720 422 242 71 92 chr5 148799358 148799499 -3737760 - MT2B LTR ERVL -344 257 120 7 1720 272 395 16 0 chr5 148799543 148799667 -3737592 + MER5A1 DNA MER1_type 41 166 0 7 1720 182 271 134 0 chr5 148799737 148799858 -3737401 + MIR SINE MIR 35 183 -85 7 1720 24 0 0 0 chr5 148800124 148800148 -3737111 + AT_rich Low_complexity Low_complexity 1 24 0 7 1720 4850 173 37 25 chr5 148800148 148801125 -3736134 - Lx3C LINE L1 -2 6974 5986 7 1720 1087 187 30 0 chr5 148801144 148801342 -3735917 + B3 SINE B2 13 216 0 7 1720 396 0 0 0 chr5 148801348 148801392 -3735867 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 7 1720 252 303 59 29 chr5 148801578 148801748 -3735511 + LTR33A_ LTR ERVL 355 529 -2 7 1720 277 273 195 75 chr5 148801792 148801988 -3735271 - Charlie2b DNA MER1_type -2489 293 67 7 1720 704 194 181 11 chr5 148801988 148802170 -3735089 - B3 SINE B2 -2 214 2 7 1720 277 273 195 75 chr5 148802170 148802199 -3735060 - Charlie2b DNA MER1_type -2716 66 41 7 1720 336 309 147 126 chr5 148802698 148803046 -3734213 + MLT1A LTR MaLR 15 369 -5 7 1720 191 341 33 11 chr5 148803325 148803417 -3733842 - MIR SINE MIR -156 106 13 7 1720 1181 142 57 10 chr5 148803613 148803805 -3733454 - B3 SINE B2 -11 205 5 7 1720 233 29 0 29 chr5 148803854 148803889 -3733370 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 7 1720 1102 69 14 0 chr5 148803890 148804035 -3733224 - B1_Mus1 SINE Alu -1 147 1 7 1720 923 169 196 5 chr5 148804177 148804397 -3732862 + ORR1D2 LTR MaLR 1 262 -108 7 1720 455 201 97 39 chr5 148804397 148804552 -3732707 + ORR1D2 LTR MaLR 176 339 -31 7 1720 29 0 0 0 chr5 148804975 148805004 -3732255 + AT_rich Low_complexity Low_complexity 1 29 0 7 1720 31 26 0 0 chr5 148805459 148805497 -3731762 + AT_rich Low_complexity Low_complexity 1 38 0 7 1720 407 135 80 13 chr5 148805553 148805628 -3731631 + B1_Mur3 SINE Alu 29 108 -41 7 1720 2351 147 63 0 chr5 148806117 148806513 -3730746 - MTC LTR MaLR 0 421 1 7 1720 336 320 98 20 chr5 148806616 148806769 -3730490 - Tigger5 DNA MER2_type -2220 186 22 7 1720 1385 85 26 5 chr5 148806769 148806959 -3730300 - B2_Mm2 SINE B2 0 195 2 7 1720 3599 23 0 0 chr5 148806962 148807358 -3729901 + MTA_Mm LTR MaLR 1 396 0 7 1720 362 21 21 0 chr5 148807845 148807892 -3729367 + (TAA)n Simple_repeat Simple_repeat 2 49 0 7 1720 896 180 5 43 chr5 148808156 148808342 -3728917 + B3A SINE B2 2 180 -18 7 1720 315 66 48 32 chr5 148809975 148810038 -3727221 + (CATA)n Simple_repeat Simple_repeat 3 66 0 7 1720 914 183 12 12 chr5 148810038 148810204 -3727055 - B2_Mm2 SINE B2 -29 166 1 7 1720 1116 75 7 0 chr5 148810816 148810963 -3726296 + B1_Mus1 SINE Alu 1 148 0 7 1720 233 347 96 43 chr5 148810992 148811459 -3725800 + Lx8 LINE L1 6963 7454 -19 7 1720 295 300 48 30 chr5 148811519 148811684 -3725575 - L1_Rod LINE L1 -4311 1536 1369 7 1720 1483 280 74 23 chr5 148811869 148812381 -3724878 - Lx9 LINE L1 -49 7595 7058 7 1720 1332 219 141 21 chr5 148812393 148812777 -3724482 - RMER13A LTR ERVK -239 669 242 7 1720 489 17 0 0 chr5 148812790 148812848 -3724411 + (TG)n Simple_repeat Simple_repeat 2 59 0 7 1720 22 0 0 0 chr5 148813097 148813119 -3724140 + AT_rich Low_complexity Low_complexity 1 22 0 7 1720 189 0 0 0 chr5 148813221 148813242 -3724017 + (TTA)n Simple_repeat Simple_repeat 1 21 0 7 1720 233 333 83 55 chr5 148814132 148814160 -3723099 - B2_Mm1t SINE B2 -7 186 161 7 1720 450 0 0 0 chr5 148814160 148814210 -3723049 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1720 607 254 93 7 chr5 148814210 148814362 -3722897 - B3A SINE B2 -34 164 1 7 1720 254 309 48 24 chr5 148815732 148815815 -3721444 + MLT1A1 LTR MaLR 292 376 -32 7 1720 1003 166 81 48 chr5 148815867 148816076 -3721183 - B3 SINE B2 0 216 1 7 1720 219 69 0 0 chr5 148817252 148817281 -3719978 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1720 342 0 0 0 chr5 148817330 148817368 -3719891 + (TG)n Simple_repeat Simple_repeat 2 39 0 7 1720 1414 206 153 0 chr5 148817721 148818042 -3719217 - ORR1D2 LTR MaLR 0 370 1 7 1720 331 330 71 19 chr5 148818096 148818306 -3718953 + MIR SINE MIR 40 260 -2 7 1720 2930 48 40 3 chr5 148819348 148819727 -3717532 + MTB LTR MaLR 1 393 -7 7 1720 1659 196 38 13 chr5 148819730 148820046 -3717213 - MTD LTR MaLR -14 405 82 7 1720 323 0 0 45 chr5 148820446 148820479 -3716780 + (TCC)n Simple_repeat Simple_repeat 1 33 0 7 1720 1128 128 0 0 chr5 148820479 148820658 -3716601 + (TTC)n Simple_repeat Simple_repeat 1 179 0 7 1720 323 0 0 45 chr5 148820658 148820668 -3716591 + (TCC)n Simple_repeat Simple_repeat 1 9 0 7 1720 1166 62 0 14 chr5 148820668 148820816 -3716443 - B1_Mus1 SINE Alu -2 146 1 7 1720 1064 24 0 0 chr5 148820860 148820984 -3716275 + B2_Mm1a SINE B2 1 124 -69 7 1720 1613 47 0 5 chr5 148820984 148821178 -3716081 + B2_Mm1t SINE B2 1 193 0 7 1720 876 169 75 6 chr5 148821495 148821656 -3715603 - B3 SINE B2 -26 190 19 7 1720 207 0 0 0 chr5 148822151 148822174 -3715085 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7 1720 630 189 73 29 chr5 148822344 148822480 -3714779 - B3 SINE B2 -73 143 2 8 1720 26 0 0 0 chr5 148822595 148822621 -3714638 + AT_rich Low_complexity Low_complexity 1 26 0 8 1720 1811 148 6 67 chr5 148823539 148823585 -3713674 - ORR1B2 LTR MaLR -8 359 326 8 1720 1130 62 0 14 chr5 148823585 148823731 -3713528 - B1_Mus1 SINE Alu 0 148 5 8 1720 1811 153 9 66 chr5 148823731 148824078 -3713181 - ORR1B2 LTR MaLR -41 353 5 8 1720 603 164 17 0 chr5 148824062 148824178 -3713081 - ORR1B2 LTR MaLR -249 118 1 8 1720 505 281 129 25 chr5 148824202 148824549 -3712710 + L1MA5 LINE L1 5714 6106 -194 8 1720 1245 71 54 0 chr5 148824585 148824753 -3712506 + B2_Mm1t SINE B2 2 178 -15 8 1720 378 142 0 5 chr5 148824800 148824865 -3712394 + B2_Mm2 SINE B2 47 109 -107 8 1720 273 57 0 0 chr5 148824879 148824914 -3712345 + (TAAG)n Simple_repeat Simple_repeat 1 35 0 8 1720 323 281 109 19 chr5 148825017 148825173 -3712086 - MER3 DNA MER1_type -9 200 31 8 1720 285 294 0 0 chr5 148825389 148825481 -3711778 + G-rich Low_complexity Low_complexity 2 93 0 8 1720 267 315 43 43 chr5 148825818 148825911 -3711348 + Lx8 LINE L1 6224 6316 -1157 8 1720 1369 150 5 0 chr5 148829492 148829705 -3707554 + B3 SINE B2 3 216 0 8 1720 21 0 0 0 chr5 148830075 148830096 -3707163 + AT_rich Low_complexity Low_complexity 1 21 0 8 1720 231 265 0 0 chr5 148830132 148830181 -3707078 - B3 SINE B2 -119 97 49 8 1720 376 237 0 0 chr5 148830269 148830345 -3706914 - RSINE1 SINE B4 -62 103 28 8 1720 227 330 69 20 chr5 148830391 148830493 -3706766 - MLT2C1 LTR ERVL -73 324 218 8 1720 268 241 35 45 chr5 148830760 148830861 -3706398 - MIRm SINE MIR -76 192 92 8 1720 314 283 30 0 chr5 148831054 148831153 -3706106 + L1M2 LINE L1 5624 5725 -587 8 1720 243 0 0 0 chr5 148831308 148831335 -3705924 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1720 789 103 0 0 chr5 148831539 148831656 -3705603 + (GGGA)n Simple_repeat Simple_repeat 4 120 0 8 1720 1484 230 99 21 chr5 148832708 148833080 -3704179 + MTD LTR MaLR 1 372 -7 8 1720 294 219 178 0 chr5 148833348 148833421 -3703838 + RMER1C Other Other 1257 1342 0 8 1720 402 85 0 0 chr5 148833561 148833620 -3703639 + (TGAA)n Simple_repeat Simple_repeat 4 62 0 8 1720 268 213 225 14 chr5 148834083 148834221 -3703038 - RLTR21 LTR ERVK -321 1251 1085 8 1720 209 233 0 27 chr5 148834224 148834299 -3702960 + (CATA)n Simple_repeat Simple_repeat 3 75 0 8 1720 379 203 8 17 chr5 148834342 148834462 -3702797 + (CATA)n Simple_repeat Simple_repeat 4 122 0 8 1720 755 158 0 0 chr5 148835181 148835301 -3701958 - B1_Mur3 SINE Alu -21 128 9 8 1720 500 26 0 49 chr5 148836288 148836370 -3700889 + (TATG)n Simple_repeat Simple_repeat 1 78 0 8 1720 266 289 0 0 chr5 148836399 148836475 -3700784 - L1M3 LINE L1 -1371 4775 4700 8 1720 531 31 0 0 chr5 148836496 148836561 -3700698 + (TG)n Simple_repeat Simple_repeat 2 66 0 8 1720 259 288 119 24 chr5 148836570 148836780 -3700479 - L1M3 LINE L1 -1548 4592 4363 8 1720 777 252 48 65 chr5 148836836 148837003 -3700256 - RLTR15 LTR ERVK 0 359 196 8 1720 450 0 0 0 chr5 148837003 148837053 -3700206 + (TC)n Simple_repeat Simple_repeat 1 50 0 8 1720 1213 61 0 0 chr5 148837055 148837202 -3700057 - B1_Mm SINE Alu 0 147 1 8 1720 777 252 48 65 chr5 148837202 148837367 -3699892 - RLTR15 LTR ERVK -164 195 30 8 1720 331 277 172 67 chr5 148837396 148837651 -3699608 - L1M3 LINE L1 -1869 4271 3990 8 1720 1127 81 6 0 chr5 148839047 148839207 -3698052 + (TTCC)n Simple_repeat Simple_repeat 4 164 0 8 1720 216 0 0 0 chr5 148840095 148840119 -3697140 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 8 1720 5280 154 43 2 chr5 148840903 148841770 -3695489 + Lx5 LINE L1 6146 7047 -3 8 1720 1267 34 0 0 chr5 148841858 148842005 -3695254 + B1_Mm SINE Alu 1 147 0 8 1720 510 167 0 0 chr5 148842253 148842361 -3694898 + (CA)n Simple_repeat Simple_repeat 1 108 0 8 1720 312 174 0 0 chr5 148842366 148842412 -3694847 + HAL1-3A_ME LINE L1 1976 2021 -837 8 1720 323 299 49 6 chr5 148842458 148842613 -3694646 + L1M5 LINE L1 5479 5640 -543 8 1720 963 245 227 0 chr5 148843136 148843475 -3693784 - MTD LTR MaLR 0 419 4 8 1720 1256 82 65 5 chr5 148843656 148843675 -3693584 - B2_Mm2 SINE B2 0 195 177 8 1720 180 0 0 0 chr5 148843675 148843695 -3693564 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 8 1720 1256 82 65 5 chr5 148843695 148843859 -3693400 - B2_Mm2 SINE B2 -19 176 1 8 1720 990 296 85 28 chr5 148844527 148844917 -3692342 - MLT2D LTR ERVL 0 414 3 8 1720 1026 148 0 0 chr5 148844932 148845081 -3692178 - B1_Mur4 SINE Alu 0 150 2 8 1720 1416 138 0 9 chr5 148845168 148845381 -3691878 - B3 SINE B2 0 216 6 8 1720 431 215 0 0 chr5 148846237 148846316 -3690943 - L1_Mur2 LINE L1 -834 5043 4965 8 1720 1967 90 87 0 chr5 148846307 148846606 -3690653 - L1_Mur2 LINE L1 -3204 2673 2349 8 1720 996 110 0 0 chr5 148846606 148846760 -3690499 - L1_Mur2 LINE L1 -6379 707 554 8 1720 22 70 0 0 chr5 148847421 148847464 -3689795 + AT_rich Low_complexity Low_complexity 1 43 0 8 1720 409 200 40 34 chr5 148847471 148847647 -3689612 + (CTATA)n Simple_repeat Simple_repeat 4 180 0 8 1720 3187 39 3 3 chr5 148847652 148848043 -3689216 - MTB LTR MaLR 0 400 10 8 1720 342 0 0 0 chr5 148848904 148848942 -3688317 + (CA)n Simple_repeat Simple_repeat 1 38 0 8 1720 388 194 28 0 chr5 148849015 148849087 -3688172 + RSINE1 SINE B4 51 124 -41 8 1720 324 0 0 0 chr5 148849087 148849123 -3688136 + (CA)n Simple_repeat Simple_repeat 2 37 0 8 1720 357 24 0 0 chr5 148849863 148849905 -3687354 + (TG)n Simple_repeat Simple_repeat 2 43 0 8 1720 834 264 64 13 chr5 148850034 148850268 -3686991 + Lx6 LINE L1 7185 7430 -30 8 1720 294 202 161 43 chr5 148850288 148850381 -3686878 + Lx7 LINE L1 7264 7367 -329 8 1720 22 35 0 0 chr5 148850399 148850428 -3686831 + AT_rich Low_complexity Low_complexity 1 29 0 8 1720 1356 166 74 37 chr5 148850437 148850762 -3686497 + Lx7 LINE L1 7360 7696 0 8 1720 197 33 0 32 chr5 148850908 148850939 -3686320 + (TAA)n Simple_repeat Simple_repeat 2 31 0 8 1720 1114 199 24 0 chr5 148851019 148851230 -3686029 + B3 SINE B2 1 216 0 8 1720 181 167 37 0 chr5 148851349 148851403 -3685856 + (TA)n Simple_repeat Simple_repeat 2 57 0 8 1720 1200 278 108 5 chr5 148851811 148852191 -3685068 + MTD LTR MaLR 1 419 0 8 1720 222 105 0 0 chr5 148853189 148853227 -3684032 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1720 240 143 0 0 chr5 148854498 148854540 -3682719 + (CCA)n Simple_repeat Simple_repeat 1 42 0 8 1720 704 223 22 0 chr5 148854540 148854679 -3682580 - B1_Mus2 SINE Alu -3 144 3 8 1720 517 343 0 0 chr5 148854891 148855114 -3682145 + (ATATG)n Simple_repeat Simple_repeat 1 223 0 8 1720 225 0 0 0 chr5 148855283 148855308 -3681951 + (TG)n Simple_repeat Simple_repeat 2 26 0 8 1720 295 263 26 13 chr5 148855309 148855386 -3681873 - B3 SINE B2 -50 166 89 8 1720 580 221 9 9 chr5 148855429 148855543 -3681716 - B3A SINE B2 -80 118 5 8 1720 326 185 0 17 chr5 148855631 148855736 -3681523 - B2_Mm2 SINE B2 -10 185 47 8 1720 1280 107 11 0 chr5 148855802 148855979 -3681280 - B2_Mm1t SINE B2 -14 179 1 8 1720 181 222 145 53 chr5 148855981 148856057 -3681202 - MIRb SINE MIR -66 202 120 8 1720 3247 51 2 8 chr5 148856206 148856604 -3680655 - MTA_Mm LTR MaLR 0 396 1 8 1720 571 226 182 25 chr5 148857078 148857237 -3680022 - B3 SINE B2 0 216 33 8 1720 212 157 39 0 chr5 148857330 148857381 -3679878 + GA-rich Low_complexity Low_complexity 1 53 0 8 1720 962 211 25 25 chr5 148857579 148857778 -3679481 + B3 SINE B2 15 213 -3 8 1720 528 296 0 0 chr5 148858326 148858502 -3678757 + GA-rich Low_complexity Low_complexity 3 178 0 8 1720 441 337 0 0 chr5 148858453 148858628 -3678631 + G-rich Low_complexity Low_complexity 5 179 0 8 1720 212 176 67 13 chr5 148858819 148858894 -3678365 + (TA)n Simple_repeat Simple_repeat 2 80 0 8 1720 374 344 0 8 chr5 148858929 148859052 -3678207 + Lx9 LINE L1 5848 5969 -1675 8 1720 208 310 0 0 chr5 148859256 148859314 -3677945 + (TG)n Simple_repeat Simple_repeat 2 59 0 8 1720 460 280 0 39 chr5 148859451 148859581 -3677678 + Lx8 LINE L1 6255 6379 -1094 8 1720 360 258 10 40 chr5 148860495 148860596 -3676663 - PB1D10 SINE Alu -8 109 12 8 1720 921 254 10 0 chr5 148861237 148861446 -3675813 - B3 SINE B2 -5 211 1 8 1720 490 246 148 67 chr5 148861576 148861851 -3675408 + MLT1E2 LTR MaLR 173 473 -151 8 1720 393 141 23 12 chr5 148862108 148862194 -3675065 + CT-rich Low_complexity Low_complexity 3 89 0 8 1720 5120 84 1 6 chr5 148862452 148863138 -3674121 + L1_Mus1 LINE L1 5885 6567 0 8 1720 239 327 30 0 chr5 148863657 148863758 -3673501 - L1MC LINE L1 -2198 5684 5581 8 1720 2180 116 13 0 chr5 148863903 148864221 -3673038 - ORR1A2 LTR MaLR 0 327 6 8 1720 525 321 73 12 chr5 148864460 148864788 -3672471 + L1ME1 LINE L1 5815 6162 -17 8 1720 396 0 0 0 chr5 148865496 148865540 -3671719 + (TC)n Simple_repeat Simple_repeat 1 44 0 8 1720 257 118 0 19 chr5 148865558 148865610 -3671649 + (CA)n Simple_repeat Simple_repeat 1 51 0 8 1720 450 202 22 0 chr5 148865637 148865828 -3671431 + (CA)n Simple_repeat Simple_repeat 1 195 0 8 1720 411 233 109 25 chr5 148865829 148865948 -3671311 + ID_B1 SINE B4 84 212 -12 8 1720 772 303 96 14 chr5 148865993 148866348 -3670911 + L1MB2 LINE L1 5473 5856 -315 8 1720 950 261 99 27 chr5 148866461 148866795 -3670464 - ORR1E-int LTR MaLR -1208 372 15 8 1720 721 250 65 20 chr5 148866805 148867005 -3670254 - B3 SINE B2 -7 209 1 8 1720 622 263 144 59 chr5 148867028 148867369 -3669890 - ORR1E LTR MaLR 0 379 1 8 1720 363 336 53 32 chr5 148867384 148867630 -3669629 - MER46C DNA MER2_type -86 252 2 8 1720 564 275 78 24 chr5 148867877 148868082 -3669177 - B3 SINE B2 0 216 1 8 1720 515 303 35 126 chr5 148868411 148868759 -3668500 + ORR1E LTR MaLR 44 359 0 8 1720 186 103 0 0 chr5 148868815 148868844 -3668415 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1720 980 298 46 92 chr5 148868993 148869426 -3667833 + MLT2D LTR ERVL 2 414 0 8 1720 232 291 59 71 chr5 148870362 148870447 -3666812 - MIRb SINE MIR -151 117 34 9 1720 1097 184 39 0 chr5 148871008 148871215 -3666044 + B3 SINE B2 2 216 0 9 1720 246 367 9 0 chr5 148871438 148871547 -3665712 + MER5B DNA MER1_type 65 174 -4 9 1720 2008 121 63 6 chr5 148871746 148872080 -3665179 + RLTR15 LTR ERVK 1 353 -6 9 1720 1081 261 4 18 chr5 148872497 148872774 -3664485 + L1_Rod LINE L1 481 753 -6419 9 1720 984 200 28 28 chr5 148873498 148873692 -3663567 + B3 SINE B2 2 197 -19 9 1720 266 50 25 0 chr5 148873692 148873732 -3663527 + (CAA)n Simple_repeat Simple_repeat 2 42 0 9 1720 984 200 28 28 chr5 148873732 148873748 -3663511 + B3 SINE B2 198 212 -4 9 1720 480 175 12 0 chr5 148874745 148874825 -3662434 - B3A SINE B2 -116 82 2 9 1720 27 0 0 0 chr5 148875794 148875821 -3661438 + AT_rich Low_complexity Low_complexity 1 27 0 9 1720 593 255 15 60 chr5 148875868 148876068 -3661191 - B3A SINE B2 -7 191 1 9 1720 702 321 104 37 chr5 148876079 148876616 -3660643 - L1MB1 LINE L1 -69 6120 5548 9 1720 462 159 0 0 chr5 148877181 148877269 -3659990 + (TA)n Simple_repeat Simple_repeat 2 89 0 9 1720 450 0 0 0 chr5 148877271 148877321 -3659938 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1720 916 309 104 10 chr5 148877683 148878066 -3659193 - Lx8 LINE L1 -103 7370 6952 9 1720 793 84 16 27 chr5 148878087 148878348 -3658911 + (TCTA)n Simple_repeat Simple_repeat 1 257 0 9 1720 670 259 69 6 chr5 148878349 148878524 -3658735 - B3 SINE B2 -16 200 15 9 1720 216 67 0 0 chr5 148881166 148881196 -3656063 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 9 1720 1001 68 75 0 chr5 148881205 148881338 -3655921 - B1_Mus1 SINE Alu -2 146 4 9 1720 187 272 62 88 chr5 148881554 148881667 -3655592 + MIR SINE MIR 36 145 -117 9 1720 733 243 48 6 chr5 148881771 148881958 -3655301 - Lx8 LINE L1 -224 7249 7044 9 1720 189 250 0 0 chr5 148882632 148882672 -3654587 - L2b LINE L2 -10 3365 3326 9 1720 383 200 0 146 chr5 148882822 148882851 -3654408 + MT2B LTR ERVL 143 153 -448 9 1720 690 92 0 0 chr5 148882851 148882956 -3654303 + B1_Mur3 SINE Alu 1 105 -15 9 1720 360 43 0 0 chr5 148883786 148883832 -3653427 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 1720 414 0 0 0 chr5 148883832 148883878 -3653381 + (TG)n Simple_repeat Simple_repeat 2 47 0 9 1720 392 226 71 0 chr5 148883913 148883997 -3653262 - RSINE1 SINE B4 -60 105 16 9 1720 1201 162 15 0 chr5 148884139 148884336 -3652923 + Lx4B LINE L1 6509 6708 -350 9 1720 991 216 9 24 chr5 148885094 148885307 -3651952 + B3 SINE B2 2 211 -5 9 1720 21 0 0 0 chr5 148885308 148885329 -3651930 + AT_rich Low_complexity Low_complexity 1 21 0 9 1720 637 262 98 21 chr5 148886212 148886446 -3650813 - Tigger7 DNA MER2_type -92 2399 2148 9 1720 643 338 82 7 chr5 148886789 148887069 -3650190 - Tigger7 DNA MER2_type -2184 307 7 9 1720 859 96 51 25 chr5 148887110 148887520 -3649739 + (CA)n Simple_repeat Simple_repeat 1 421 0 9 1720 519 60 0 0 chr5 148890201 148890268 -3646991 + (TC)n Simple_repeat Simple_repeat 2 68 0 9 1720 260 152 35 94 chr5 148890599 148890690 -3646569 + B1F SINE Alu 54 147 -2 9 1720 867 207 155 0 chr5 148890813 148891026 -3646233 + MTD LTR MaLR 170 415 -4 9 1720 1023 184 56 0 chr5 148891418 148891614 -3645645 - B3 SINE B2 -9 207 1 9 1720 345 269 125 21 chr5 148893199 148893343 -3643916 - L1MCa LINE L1 -4524 1984 1826 9 1720 564 29 0 0 chr5 148893518 148893588 -3643671 + (TG)n Simple_repeat Simple_repeat 2 71 0 9 1720 631 219 0 0 chr5 148893589 148893703 -3643556 - RSINE1 SINE B4 -50 115 2 9 1720 23 33 0 0 chr5 148893950 148893980 -3643279 + AT_rich Low_complexity Low_complexity 1 30 0 9 1720 804 185 15 195 chr5 148893982 148894244 -3643015 - B3 SINE B2 0 216 2 9 1720 720 216 92 10 chr5 148895234 148895430 -3641829 - B3 SINE B2 -2 214 3 9 1720 447 228 171 0 chr5 148895545 148895668 -3641591 - B1F2 SINE Alu -1 148 5 9 1720 295 366 40 69 chr5 148895916 148896192 -3641067 - L2a LINE L2 -62 3364 3097 9 1720 956 258 83 30 chr5 148896196 148896535 -3640724 - RLTR15 LTR ERVK 0 359 3 9 1720 837 174 117 39 chr5 148897001 148897180 -3640079 - URR1B DNA MER1_type -32 193 1 9 1720 249 207 0 0 chr5 148897232 148897314 -3639945 + C-rich Low_complexity Low_complexity 1 82 0 9 1721 213 39 0 0 chr5 148898012 148898038 -3639221 + (C)n Simple_repeat Simple_repeat 1 26 0 9 1721 217 109 21 21 chr5 148898329 148898376 -3638883 + T-rich Low_complexity Low_complexity 3 49 0 9 1721 795 137 78 14 chr5 148898427 148898558 -3638701 + B1_Mur4 SINE Alu 1 142 -8 9 1721 414 0 0 0 chr5 148898558 148898604 -3638655 + (CA)n Simple_repeat Simple_repeat 2 47 0 9 1721 23 0 0 0 chr5 148899173 148899196 -3638063 + AT_rich Low_complexity Low_complexity 1 23 0 9 1721 468 0 0 0 chr5 148899655 148899707 -3637552 + (TG)n Simple_repeat Simple_repeat 2 53 0 9 1721 908 180 113 11 chr5 148900224 148900409 -3636850 - B3 SINE B2 -5 211 8 9 1721 355 161 43 12 chr5 148900513 148900596 -3636663 - ORR1B2 LTR MaLR 0 421 312 9 1721 674 288 101 25 chr5 148900614 148900892 -3636367 + Lx8 LINE L1 7172 7470 -3 9 1721 405 0 0 0 chr5 148902754 148902799 -3634460 + (TG)n Simple_repeat Simple_repeat 1 45 0 9 1721 504 0 0 0 chr5 148902799 148902854 -3634405 + (GA)n Simple_repeat Simple_repeat 1 56 0 9 1721 225 273 60 15 chr5 148903297 148903364 -3633895 - MLT2B1 LTR ERVL -4 550 481 9 1721 464 322 76 46 chr5 148903546 148903860 -3633399 - MLT2B1 LTR ERVL -90 477 7 9 1721 190 132 19 19 chr5 148904433 148904487 -3632772 + GA-rich Low_complexity Low_complexity 2 55 0 9 1721 204 40 0 0 chr5 148904720 148904745 -3632514 + (TG)n Simple_repeat Simple_repeat 1 25 0 9 1721 183 156 30 30 chr5 148904904 148904970 -3632289 + CT-rich Low_complexity Low_complexity 4 69 0 9 1721 839 183 128 25 chr5 148904973 148905006 -3632253 - B3 SINE B2 0 216 180 9 1721 447 19 0 0 chr5 148905006 148905058 -3632201 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 9 1721 1228 89 2 0 chr5 148905058 148905220 -3632039 - B2_Mm2 SINE B2 -37 179 1 9 1721 698 34 0 11 chr5 148905718 148905808 -3631451 + (TCC)n Simple_repeat Simple_repeat 2 90 0 9 1721 828 240 48 24 chr5 148906817 148907026 -3630233 - B3 SINE B2 -1 215 2 9 1721 477 50 0 0 chr5 148907200 148907260 -3629999 + (CA)n Simple_repeat Simple_repeat 2 61 0 9 1721 234 192 107 71 chr5 148907366 148907450 -3629809 - B2_Mm2 SINE B2 -5 190 104 9 1721 752 199 23 0 chr5 148907397 148907528 -3629731 + B1_Mur1 SINE Alu 9 142 -7 9 1721 389 104 0 107 chr5 148907537 148907612 -3629647 - B3 SINE B2 -1 215 149 9 1721 340 224 9 18 chr5 148907613 148907722 -3629537 + CT-rich Low_complexity Low_complexity 1 108 0 9 1721 189 74 0 0 chr5 148908085 148908112 -3629147 + (TTG)n Simple_repeat Simple_repeat 2 28 0 9 1721 343 243 97 26 chr5 148908116 148908168 -3629091 - L1MB7 LINE L1 -21 6157 6105 9 1721 966 123 0 17 chr5 148908168 148908342 -3628917 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 9 1721 343 243 97 26 chr5 148908342 148908403 -3628856 - L1MB7 LINE L1 -74 6104 6036 9 1721 857 171 59 34 chr5 148908436 148908672 -3628587 - RLTR15 LTR ERVK -18 341 100 9 1721 608 144 37 67 chr5 148908688 148908822 -3628437 - RLTR15 LTR ERVK -226 133 4 9 1721 396 279 57 34 chr5 148908835 148909018 -3628241 - L1MB7 LINE L1 -178 6002 5817 9 1721 395 310 108 42 chr5 148909036 148909317 -3627942 - MLT1B LTR MaLR -38 352 53 9 1721 237 280 9 9 chr5 148909337 148909445 -3627814 - L1MB7 LINE L1 -351 5823 5716 9 1721 702 207 0 0 chr5 148909533 148909697 -3627562 + (TA)n Simple_repeat Simple_repeat 2 165 0 9 1721 248 324 106 34 chr5 148909754 148909933 -3627326 - MLT1F-int LTR MaLR -1297 192 1 9 1721 739 297 98 36 chr5 148909933 148910257 -3627002 - MLT1F LTR MaLR -15 533 183 9 1721 1250 249 92 6 chr5 148910556 148910891 -3626368 + ORR1D2 LTR MaLR 5 368 -2 9 1721 316 291 61 71 chr5 148911375 148911574 -3625685 - RSINE1 SINE B4 -93 199 1 9 1721 22 56 0 0 chr5 148911609 148911645 -3625614 + AT_rich Low_complexity Low_complexity 1 36 0 9 1721 374 264 146 0 chr5 148911848 148911958 -3625301 - ID_B1 SINE B4 -96 128 3 9 1721 180 0 0 0 chr5 148912193 148912213 -3625046 + (CATTT)n Simple_repeat Simple_repeat 4 23 0 9 1721 228 86 0 0 chr5 148912334 148912369 -3624890 + (T)n Simple_repeat Simple_repeat 1 35 0 9 1721 409 224 56 9 chr5 148912657 148912765 -3624494 + Lx9 LINE L1 5815 5927 -1717 9 1721 2538 159 40 9 chr5 148912749 148913193 -3624066 + Lx9 LINE L1 6952 7409 -235 9 1721 433 224 26 0 chr5 148913255 148913331 -3623928 + B1_Mur1 SINE Alu 40 117 -32 9 1721 324 232 0 79 chr5 148913256 148913345 -3623914 + MT2B LTR ERVL 198 279 -322 9 1721 37 0 0 0 chr5 148913355 148913392 -3623867 + AT_rich Low_complexity Low_complexity 1 37 0 9 1721 424 238 51 23 chr5 148913400 148913576 -3623683 + Lx9 LINE L1 7464 7644 0 9 1721 1062 192 29 5 chr5 148913584 148913793 -3623466 - B3 SINE B2 -1 215 2 9 1721 543 226 18 58 chr5 148913830 148913967 -3623292 + B1_Mur1 SINE Alu 8 140 -9 9 1721 22 0 0 0 chr5 148914053 148914075 -3623184 + AT_rich Low_complexity Low_complexity 1 22 0 9 1721 338 298 53 20 chr5 148914286 148914436 -3622823 - L1MA4 LINE L1 -376 5924 5759 9 1721 865 62 41 29 chr5 148914437 148914964 -3622295 + (TG)n Simple_repeat Simple_repeat 1 533 0 9 1721 348 294 60 40 chr5 148914964 148915006 -3622253 - Lx7 LINE L1 -1952 5744 5703 9 1721 405 0 0 0 chr5 148915006 148915051 -3622208 + (CA)n Simple_repeat Simple_repeat 1 45 0 9 1721 348 294 60 40 chr5 148915051 148915157 -3622102 - Lx7 LINE L1 -1994 5702 5595 9 1721 204 125 0 0 chr5 148915469 148915501 -3621758 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1721 541 195 78 0 chr5 148915502 148915630 -3621629 - Lx7 LINE L1 0 7696 7559 9 1721 2216 236 41 32 chr5 148915661 148916195 -3621064 - Lx7 LINE L1 -233 7463 6925 9 1721 398 297 88 91 chr5 148916192 148916577 -3620682 - Lx7 LINE L1 -552 5328 4945 9 1721 429 301 89 30 chr5 148916660 148916862 -3620397 - RMER15 LTR ERVL -2 573 360 9 1721 597 284 7 48 chr5 148918965 148919172 -3618087 + B3A SINE B2 22 216 0 9 1721 459 0 0 0 chr5 148919772 148919823 -3617436 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 9 1721 758 205 18 85 chr5 148920470 148920694 -3616565 - L1MB8 LINE L1 -5 6173 5965 9 1721 327 49 0 0 chr5 148920694 148920735 -3616524 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 1 1721 1141 106 0 11 chr5 148920735 148920917 -3616342 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1721 180 0 0 0 chr5 148920964 148920984 -3616275 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1 1721 230 290 151 0 chr5 148921051 148921144 -3616115 - Lx7 LINE L1 -293 7403 7297 1 1721 2308 182 22 2 chr5 148921270 148921676 -3615583 - MTD LTR MaLR -18 401 1 1 1721 221 117 16 48 chr5 148921698 148921761 -3615498 + (TA)n Simple_repeat Simple_repeat 2 62 0 1 1721 327 308 171 18 chr5 148921806 148922034 -3615225 - L1MA9 LINE L1 -32 6280 6018 1 1721 192 305 134 0 chr5 148922050 148922132 -3615127 + MIR SINE MIR 2 94 -168 1 1721 811 226 17 17 chr5 148922512 148922692 -3614567 + B3 SINE B2 1 180 -36 1 1721 1233 119 11 0 chr5 148922865 148923041 -3614218 + B2_Mm1t SINE B2 2 179 -14 1 1721 235 196 457 46 chr5 148923117 148923222 -3614037 + B2_Mm2 SINE B2 47 194 -1 1 1721 1045 192 307 7 chr5 148924340 148924411 -3612848 + MTD LTR MaLR 37 106 -313 1 1721 294 132 0 0 chr5 148924411 148924464 -3612795 + (ATG)n Simple_repeat Simple_repeat 1 53 0 1 1721 1045 192 307 7 chr5 148924464 148924685 -3612574 + MTD LTR MaLR 107 417 -2 1 1721 1090 59 0 0 chr5 148925159 148925295 -3611964 + B2_Mm2 SINE B2 2 137 -58 1 1721 3637 110 45 121 chr5 148925775 148926530 -3610729 + RMER6A LTR ERVK 57 754 -2 1 1721 561 359 68 0 chr5 148926667 148926901 -3610358 + MER2 DNA MER2_type 8 257 -88 1 1721 9618 155 36 27 chr5 148928443 148931065 -3606194 - Lx5 LINE L1 -93 6957 4286 1 1721 1193 41 0 26 chr5 148931065 148931076 -3606183 - B1_Mus2 SINE Alu 0 147 139 1 1721 222 62 0 0 chr5 148931076 148931108 -3606151 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 1 1721 1193 41 0 26 chr5 148931108 148931247 -3606012 - B1_Mus2 SINE Alu -9 138 1 1 1721 9618 137 30 44 chr5 148931247 148931343 -3605916 - Lx5 LINE L1 -1592 4285 4209 1 1721 3557 151 44 6 chr5 148931339 148931712 -3605547 - Lx5 LINE L1 -3984 1893 1514 1 1721 1038 138 0 0 chr5 148931712 148931886 -3605373 + (TCC)n Simple_repeat Simple_repeat 2 175 0 1 1721 3557 211 25 5 chr5 148931886 148932491 -3604768 - Lx5 LINE L1 -4364 1513 891 1 1721 2475 186 118 12 chr5 148932879 148933389 -3603870 - RMER19B LTR ERVK 0 902 339 1 1721 713 189 55 0 chr5 148933410 148933537 -3603722 - RMER19B LTR ERVK -675 227 94 1 1721 802 272 185 34 chr5 148933669 148934100 -3603159 - RLTR16 LTR ERVK -9 496 1 1 1721 684 184 38 5 chr5 148934100 148934252 -3603007 - RMER19B LTR ERVK -760 142 1 1 1721 1552 253 27 15 chr5 148934252 148934583 -3602676 - MTE2b LTR MaLR -44 335 1 1 1721 309 292 310 42 chr5 148934589 148934991 -3602268 - MLT2B2 LTR ERVL -2 558 5 1 1721 725 276 56 10 chr5 148935029 148935227 -3602032 + B4 SINE B4 73 279 -13 1 1721 560 111 11 0 chr5 148935536 148935626 -3601633 + (TA)n Simple_repeat Simple_repeat 1 91 0 1 1721 294 29 0 0 chr5 148935626 148935660 -3601599 + (GA)n Simple_repeat Simple_repeat 2 36 0 1 1721 574 182 0 0 chr5 148935738 148935826 -3601433 + B1_Mur2 SINE Alu 6 93 -56 1 1721 497 266 123 34 chr5 148937339 148937607 -3599652 + B4A SINE B4 1 292 0 1 1721 333 0 0 0 chr5 148937624 148937661 -3599598 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1721 633 212 100 16 chr5 148938880 148939043 -3598216 + B3 SINE B2 1 175 -18 1 1721 217 133 0 48 chr5 148939043 148939106 -3598153 + (TTAA)n Simple_repeat Simple_repeat 4 63 0 1 1721 569 218 0 56 chr5 148939784 148939910 -3597349 - B1_Mur1 SINE Alu 0 149 31 1 1721 216 0 0 0 chr5 148939918 148939942 -3597317 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1 1721 247 212 53 129 chr5 148940306 148940404 -3596855 - MLT1A1 LTR MaLR -312 96 1 1 1721 2091 150 87 15 chr5 148941630 148942023 -3595236 - MTC LTR MaLR 0 421 1 1 1721 1532 203 115 52 chr5 148942235 148942619 -3594640 - MTD LTR MaLR 0 419 12 1 1721 208 261 60 30 chr5 148944003 148944070 -3593189 + MIRc SINE MIR 128 196 -72 1 1721 1398 250 129 14 chr5 148944159 148944524 -3592735 - MTD LTR MaLR -5 414 8 1 1721 840 66 0 0 chr5 148944860 148944966 -3592293 + B2_Mm2 SINE B2 2 107 -88 1 1721 210 37 0 0 chr5 148944976 148945003 -3592256 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1721 220 220 17 17 chr5 148946367 148946427 -3590832 + C-rich Low_complexity Low_complexity 1 60 0 1 1721 198 0 0 0 chr5 148946516 148946538 -3590721 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 1 1721 690 326 61 20 chr5 148946540 148946834 -3590425 - RMER15-int LTR ERVL -550 4449 4144 1 1721 1468 240 73 62 chr5 148947154 148947454 -3589805 - L1M4c LINE L1 -3840 2542 2221 1 1721 252 0 0 0 chr5 148947454 148947482 -3589777 + (TA)n Simple_repeat Simple_repeat 1 28 0 1 1721 1468 248 123 92 chr5 148947482 148947542 -3589717 - L1M4c LINE L1 -4164 2220 2164 1 1721 732 197 212 6 chr5 148947542 148947721 -3589538 + B3 SINE B2 1 216 0 1 1721 1468 248 123 92 chr5 148947721 148947974 -3589285 - L1M4c LINE L1 -4221 2163 1907 1 1721 882 184 0 0 chr5 148947974 148948115 -3589144 - B1_Mur1 SINE Alu -8 141 1 1 1721 1468 248 123 92 chr5 148948115 148948401 -3588858 - L1M4c LINE L1 -4478 1906 1616 1 1721 438 255 29 0 chr5 148948486 148948588 -3588671 + MER21B LTR ERV1 119 223 -640 1 1721 547 316 105 21 chr5 148948589 148948828 -3588431 + MER21B LTR ERV1 375 633 -230 1 1721 538 345 31 68 chr5 148948859 148948876 -3588383 - Lx8 LINE L1 -239 7234 7220 1 1721 333 0 0 0 chr5 148948876 148948913 -3588346 + (CACCC)n Simple_repeat Simple_repeat 3 39 0 1 1721 538 345 31 68 chr5 148948913 148949309 -3587950 - Lx8 LINE L1 -254 7219 6836 1 1721 373 232 72 72 chr5 148949309 148949476 -3587783 + RLTR15 LTR ERVK 1 167 -192 1 1721 354 301 55 34 chr5 148949467 148949704 -3587555 + RLTR15 LTR ERVK 100 341 -18 1 1721 285 346 70 8 chr5 148949960 148950088 -3587171 - ORR1E LTR MaLR -221 138 3 1 1721 358 317 56 102 chr5 148951614 148952086 -3585173 - MLT1E3 LTR MaLR -97 583 1 1 1721 945 208 64 0 chr5 148953330 148953532 -3583727 + B3 SINE B2 2 216 0 1 1721 276 100 0 0 chr5 148955116 148955156 -3582103 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1 1721 716 214 68 48 chr5 148955171 148955377 -3581882 + B3 SINE B2 1 210 -6 1 1721 265 270 0 0 chr5 148955432 148955506 -3581753 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1721 185 244 198 0 chr5 148956121 148956207 -3581052 + MIRc SINE MIR 39 141 -127 1 1721 822 110 8 0 chr5 148956314 148956441 -3580818 + ORR1A4 LTR MaLR 1 128 -201 1 1721 270 266 0 0 chr5 148957114 148957253 -3580006 + (TG)n Simple_repeat Simple_repeat 2 140 0 1 1721 245 169 0 63 chr5 148957264 148957327 -3579932 + (TATATG)n Simple_repeat Simple_repeat 3 61 0 1 1721 231 241 0 0 chr5 148957380 148957463 -3579796 + (TG)n Simple_repeat Simple_repeat 1 83 0 1 1721 279 203 0 0 chr5 148959165 148959224 -3578035 + (TG)n Simple_repeat Simple_repeat 1 59 0 1 1721 479 307 79 0 chr5 148959606 148959733 -3577526 - RSINE1 SINE B4 -27 138 2 1 1721 2653 63 30 50 chr5 148959799 148960197 -3577062 + RLTR10 LTR ERVK 1 390 0 1 1721 2759 28 3 5 chr5 148960197 148960548 -3576711 + RLTR10-int LTR ERVK 58 606 -1381 1 1721 3127 29 152 26 chr5 148960573 148960995 -3576264 - IAPLTR2_Mm LTR ERVK 0 475 1 1 1721 412 252 40 10 chr5 148961002 148961102 -3576157 + RSINE1 SINE B4 41 143 -22 1 1721 2752 44 0 3 chr5 148961317 148961656 -3575603 - ORR1A1 LTR MaLR -8 338 1 1 1721 21 36 0 0 chr5 148962036 148962064 -3575195 + AT_rich Low_complexity Low_complexity 1 28 0 1 1721 1037 186 39 10 chr5 148962163 148962369 -3574890 + B3 SINE B2 2 213 -3 1 1721 343 373 20 7 chr5 148962441 148962592 -3574667 + MER45A DNA Tip100 26 178 0 1 1721 287 347 46 20 chr5 148965554 148965707 -3571552 - MamGypLTR2c LTR Gypsy -59 1009 853 1 1721 297 293 0 42 chr5 148965972 148966068 -3571191 - MLT1A1 LTR MaLR 0 408 317 1 1721 321 270 0 0 chr5 148966085 148966159 -3571100 + MTD LTR MaLR 36 109 -310 1 1721 743 162 0 0 chr5 148966661 148966778 -3570481 + B1_Mur4 SINE Alu 5 121 -29 1 1721 261 0 0 0 chr5 148967825 148967854 -3569405 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 1 1721 666 224 72 0 chr5 148967867 148967992 -3569267 - RSINE1 SINE B4 -30 135 2 1 1721 210 281 0 50 chr5 148968624 148968684 -3568575 + C-rich Low_complexity Low_complexity 1 57 0 1 1721 191 358 162 0 chr5 148968992 148969171 -3568088 - L2a LINE L2 -9 3417 3210 1 1721 355 326 98 11 chr5 148969314 148969497 -3567762 - L2a LINE L2 -397 3022 2824 1 1721 460 211 17 22 chr5 148970078 148970257 -3567002 + (TA)n Simple_repeat Simple_repeat 2 179 0 1 1721 629 299 97 53 chr5 148970353 148970653 -3566606 + MLT1A LTR MaLR 5 317 -57 1 1721 314 220 27 18 chr5 148972778 148972889 -3564370 + (TA)n Simple_repeat Simple_repeat 1 112 0 1 1721 1292 176 32 40 chr5 148972889 148972959 -3564300 - B2_Mm2 SINE B2 -2 214 148 1 1721 261 0 0 0 chr5 148972959 148972988 -3564271 + (CA)n Simple_repeat Simple_repeat 2 30 0 1 1721 1292 81 0 0 chr5 148972988 148973134 -3564125 - B2_Mm2 SINE B2 -48 147 2 1 1721 980 218 10 19 chr5 148973396 148973602 -3563657 - B3 SINE B2 -10 206 3 1 1721 345 279 23 0 chr5 148973952 148974038 -3563221 + U17 snRNA snRNA 100 187 -20 1 1721 4355 151 64 103 chr5 148974568 148974586 -3562673 - RMER19B LTR ERVK 0 902 884 1 1721 1133 83 0 0 chr5 148974586 148974730 -3562529 - B1_Mus1 SINE Alu 0 148 5 1 1721 4355 151 64 103 chr5 148974730 148975328 -3561931 - RMER19B LTR ERVK -19 883 264 1 1721 651 88 0 0 chr5 148975328 148975419 -3561840 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 1 1721 4355 151 64 103 chr5 148975419 148975740 -3561519 - RMER19B LTR ERVK -639 263 1 1 1721 27 87 0 0 chr5 148975774 148975843 -3561416 + AT_rich Low_complexity Low_complexity 1 69 0 1 1721 308 347 57 55 chr5 148975911 148976137 -3561122 + RSINE1 SINE B4 78 276 -16 1 1721 626 243 131 0 chr5 148976155 148976349 -3560910 - L1MB3 LINE L1 -110 6073 5845 1 1721 813 165 0 28 chr5 148976528 148976671 -3560588 + RMER19B LTR ERVK 642 780 -122 1 1721 873 130 0 0 chr5 148977133 148977256 -3560003 - B1_Mus1 SINE Alu -8 140 18 1 1721 546 57 0 0 chr5 148980580 148980650 -3556609 + (TA)n Simple_repeat Simple_repeat 2 71 0 1 1721 409 169 42 14 chr5 148980678 148980750 -3556509 - Lx8 LINE L1 -948 6525 6452 1 1721 818 229 43 10 chr5 148981148 148981355 -3555904 - B3 SINE B2 0 216 3 1 1721 315 0 0 0 chr5 148981412 148981447 -3555812 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1 1721 848 325 113 104 chr5 148981495 148982291 -3554968 - Charlie8 DNA MER1_type -1375 1053 251 1 1721 235 250 70 101 chr5 148982192 148982321 -3554938 - Tigger8 DNA MER2_type -387 279 155 1 1721 759 314 80 13 chr5 148982832 148983219 -3554040 - L1MA7 LINE L1 -403 5888 5476 1 1721 693 0 0 0 chr5 148984354 148984431 -3552828 + (TTTC)n Simple_repeat Simple_repeat 3 79 0 1 1721 206 128 0 25 chr5 148984854 148984894 -3552365 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1721 235 240 0 0 chr5 148985072 148985122 -3552137 + MLT2B5 LTR ERVL 1 50 -667 1 1721 4195 41 2 0 chr5 148985205 148985694 -3551565 + L1Md_T LINE L1 6093 6582 0 1 1721 251 296 101 10 chr5 148985868 148985967 -3551292 + MTEb LTR MaLR 272 379 0 1 1721 305 381 116 3 chr5 148986105 148986397 -3550862 - L1MCa LINE L1 -6182 326 2 1 1721 291 176 0 0 chr5 148986592 148986683 -3550576 + T-rich Low_complexity Low_complexity 1 91 0 1 1721 369 0 0 0 chr5 148987312 148987353 -3549906 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1721 240 315 62 0 chr5 148987355 148987485 -3549774 + L1M2 LINE L1 5482 5619 -693 1 1721 1587 230 75 62 chr5 148987485 148988003 -3549256 + MT2A LTR ERVL 1 525 -8 1 1721 3944 62 87 17 chr5 148988043 148988570 -3548689 + LTRIS2 LTR ERV1 1 564 0 1 1721 188 353 49 32 chr5 148988696 148988819 -3548440 + L2 LINE L2 2759 2883 -536 1 1721 356 325 64 35 chr5 148989121 148989293 -3547966 - L2a LINE L2 -1 3425 3249 1 1721 2142 144 3 21 chr5 148989296 148989541 -3547718 + ORR1A2 LTR MaLR 1 245 -82 1 1721 2883 82 44 5 chr5 148989541 148989946 -3547313 + BGLII LTR ERVK 1 421 0 1 1721 2142 144 3 21 chr5 148989946 148990033 -3547226 + ORR1A2 LTR MaLR 246 327 0 1 1721 800 165 0 0 chr5 148990272 148990399 -3546860 + B1_Mur1 SINE Alu 2 128 -21 1 1721 279 0 0 0 chr5 148990408 148990439 -3546820 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1 1721 1098 38 0 8 chr5 148990462 148990596 -3546663 + B1_Mus1 SINE Alu 1 133 -15 1 1721 262 248 265 52 chr5 148992100 148992236 -3545023 - MLT1E LTR MaLR -450 203 39 1 1721 369 149 0 0 chr5 148995997 148996064 -3541195 + (TTCTCC)n Simple_repeat Simple_repeat 4 70 0 1 1721 1545 43 0 0 chr5 148996064 148996414 -3540845 + (TTC)n Simple_repeat Simple_repeat 1 350 0 1 1721 308 282 8 75 chr5 148996608 148996627 -3540632 - YREP_Mm Unknown Unknown -1482 330 206 1 1721 598 244 0 0 chr5 148996627 148996742 -3540517 + ID_B1 SINE B4 79 193 -31 1 1721 238 294 96 19 chr5 148997119 148997223 -3540036 + MER20 DNA MER1_type 94 205 -14 1 1721 928 235 24 5 chr5 148997543 148997748 -3539511 + B3 SINE B2 1 209 -7 1 1721 243 0 0 0 chr5 148998579 148998606 -3538653 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1 1721 380 60 20 0 chr5 148998639 148998689 -3538570 - RLTR23 LTR ERV1 -379 51 1 1 1721 970 193 69 5 chr5 148998908 148999111 -3538148 + B3 SINE B2 1 216 0 1 1721 515 316 19 52 chr5 148999199 148999365 -3537894 - L1MA4 LINE L1 -377 5923 5763 1 1721 745 166 236 52 chr5 148999365 148999556 -3537703 - URR1A DNA MER1_type 0 226 1 1 1721 515 324 26 53 chr5 148999556 148999703 -3537556 - L1MA4 LINE L1 -529 5762 5612 1 1721 575 37 60 24 chr5 148999717 148999801 -3537458 + B2_Mm1a SINE B2 106 192 -1 1 1721 230 302 42 0 chr5 148999904 149000000 -3537259 - L1MA4 LINE L1 -1689 4454 4355 1 1721 423 329 41 38 chr5 149000004 149000295 -3536964 - L1M2 LINE L1 -1794 4349 4058 1 1721 3007 178 56 20 chr5 149000297 149000854 -3536405 - RLTR20B3 LTR ERVK 0 577 1 2 1721 4092 144 112 19 chr5 149000854 149002016 -3535243 - MYSERV16_I-int LTR ERVK 0 2326 1052 2 1721 1239 14 14 7 chr5 149002016 149002162 -3535097 - B1_Mm SINE Alu 0 147 1 3 1721 3572 140 24 40 chr5 149002162 149002370 -3534889 - MYSERV16_I-int LTR ERVK -1275 1051 851 2 1721 1211 68 0 0 chr5 149002372 149002519 -3534740 + B1_Mus1 SINE Alu 2 148 0 4 1721 3080 166 52 16 chr5 149002532 149003091 -3534168 - MYSERV16_I-int LTR ERVK -1586 740 162 2 1721 725 61 10 13 chr5 149003091 149003202 -3534057 - RLTR20B3 LTR ERVK -364 196 82 5 1721 1233 117 4 57 chr5 149003199 149003419 -3533840 - RLTR20B3 LTR ERVK -356 204 1 6 1721 403 278 65 23 chr5 149003419 149003633 -3533626 - L1_Mur3 LINE L1 -1850 4030 3808 7 1721 327 238 0 36 chr5 149003923 149004006 -3533253 - ID4 SINE ID 0 83 4 8 1721 373 292 60 34 chr5 149004373 149004490 -3532769 + MTEa-int LTR MaLR 1131 1250 -330 9 1721 360 0 0 0 chr5 149004519 149004559 -3532700 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1 1721 446 305 79 39 chr5 149004757 149004986 -3532273 + MTEa-int LTR MaLR 1237 1474 -106 9 1721 945 219 28 47 chr5 149004975 149005186 -3532073 + B3 SINE B2 10 216 0 1 1721 228 280 0 0 chr5 149005213 149005263 -3531996 + MTEa-int LTR MaLR 1441 1490 -19 9 1721 317 299 99 66 chr5 149005283 149005598 -3531661 + MTEa LTR MaLR 2 379 0 9 1721 394 236 8 8 chr5 149005624 149005748 -3531511 + (TA)n Simple_repeat Simple_repeat 2 125 0 1 1721 366 23 0 0 chr5 149005770 149005813 -3531446 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1721 352 333 82 38 chr5 149005912 149006096 -3531163 - ORR1E LTR MaLR -167 192 1 1 1721 1030 254 152 19 chr5 149006478 149006702 -3530557 - Lx9 LINE L1 -7 7637 7360 1 1721 441 0 0 0 chr5 149006702 149006751 -3530508 + (TC)n Simple_repeat Simple_repeat 1 49 0 1 1721 1030 254 152 19 chr5 149006751 149006988 -3530271 - Lx9 LINE L1 -285 7359 7117 1 1721 396 295 110 48 chr5 149007230 149007458 -3529801 - MLT1A0 LTR MaLR -8 357 116 1 1721 195 162 0 0 chr5 149007463 149007500 -3529759 + G-rich Low_complexity Low_complexity 3 39 0 1 1721 1362 82 16 5 chr5 149007719 149007903 -3529356 + B2_Mm2 SINE B2 1 186 -9 1 1721 525 228 213 23 chr5 149007914 149008223 -3529036 - L1MB8 LINE L1 -19 6159 5773 2 1721 384 287 149 51 chr5 149008351 149008586 -3528673 - B4A SINE B4 -2 290 33 2 1721 344 320 92 30 chr5 149008595 149008916 -3528343 - L1M5 LINE L1 -977 5467 5121 2 1721 239 253 70 50 chr5 149009050 149009150 -3528109 - MLT1J1 LTR MaLR -238 206 105 2 1721 974 121 0 6 chr5 149009187 149009288 -3527971 + (TCC)n Simple_repeat Simple_repeat 2 102 0 2 1721 1473 0 17 0 chr5 149009288 149009465 -3527794 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2 1721 974 121 0 6 chr5 149009465 149009521 -3527738 + (TCC)n Simple_repeat Simple_repeat 3 58 0 2 1721 896 152 0 7 chr5 149009530 149009669 -3527590 - B1_Mur4 SINE Alu -12 138 1 2 1721 900 169 143 0 chr5 149009779 149009968 -3527291 + B3 SINE B2 1 216 0 2 1721 791 228 78 0 chr5 149010814 149011007 -3526252 - B3 SINE B2 -4 212 5 2 1721 545 64 0 13 chr5 149011094 149011173 -3526086 + (TTCC)n Simple_repeat Simple_repeat 2 79 0 3 1721 197 59 0 56 chr5 149011177 149011213 -3526046 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 3 1721 749 122 98 0 chr5 149011219 149011342 -3525917 - B1_Mus2 SINE Alu -4 143 9 3 1721 345 205 102 102 chr5 149011260 149011358 -3525901 - MT2B LTR ERVL -344 257 160 3 1721 213 195 0 0 chr5 149011365 149011406 -3525853 + C-rich Low_complexity Low_complexity 1 41 0 3 1721 1446 57 17 0 chr5 149011887 149012064 -3525195 - B2_Mm2 SINE B2 -14 181 2 3 1721 844 198 68 39 chr5 149013410 149013615 -3523644 + B3 SINE B2 1 211 -5 3 1721 400 344 111 45 chr5 149013823 149013920 -3523339 + MER2B DNA MER2_type 1 98 -238 3 1721 642 60 0 0 chr5 149013920 149014003 -3523256 + (TC)n Simple_repeat Simple_repeat 2 84 0 3 1721 919 64 282 7 chr5 149014004 149014146 -3523113 - B2_Mm2 SINE B2 -14 181 1 3 1721 432 318 39 37 chr5 149014146 149014335 -3522924 + MER2 DNA MER2_type 99 317 -28 3 1721 443 288 61 25 chr5 149014723 149014919 -3522340 - RMER20B LTR ERVK -208 419 217 4 1721 696 254 111 10 chr5 149016468 149016675 -3520584 + MTD LTR MaLR 3 230 -191 4 1721 1622 32 5 0 chr5 149017531 149017721 -3519538 - B2_Mm1a SINE B2 0 193 3 4 1721 682 109 40 0 chr5 149017808 149017909 -3519350 + B2_Mm1t SINE B2 89 193 0 4 1721 936 194 45 20 chr5 149018087 149018287 -3518972 + MTD LTR MaLR 215 419 0 4 1721 2706 197 14 2 chr5 149018660 149019163 -3518096 - RLTR11A2 LTR ERVK -18 509 1 4 1721 525 208 10 10 chr5 149019398 149019500 -3517759 - B3 SINE B2 -114 102 1 4 1721 444 277 34 0 chr5 149019538 149019657 -3517602 - MER5A DNA MER1_type -6 183 61 4 1721 465 340 91 34 chr5 149019687 149020125 -3517134 + L1MC LINE L1 5313 5775 -2107 4 1721 2078 119 16 103 chr5 149020148 149020550 -3516709 - ORR1B1 LTR MaLR 0 394 1 4 1721 622 180 43 50 chr5 149020849 149020989 -3516270 + B1_Mur1 SINE Alu 1 139 -10 4 1721 619 312 82 48 chr5 149021405 149021674 -3515585 + B4 SINE B4 8 285 -7 5 1721 459 0 0 0 chr5 149021674 149021725 -3515534 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1721 639 0 0 0 chr5 149021903 149021974 -3515285 + (TC)n Simple_repeat Simple_repeat 2 72 0 5 1721 457 297 89 0 chr5 149022177 149022278 -3514981 - B1_Mur1 SINE Alu -37 112 3 5 1721 341 235 36 73 chr5 149022183 149022293 -3514966 - MT2B LTR ERVL -342 259 154 5 1721 737 205 31 93 chr5 149022872 149023098 -3514161 - B3 SINE B2 -3 213 2 5 1721 426 238 36 98 chr5 149023118 149023230 -3514029 + PB1D10 SINE Alu 28 147 -2 5 1721 341 202 18 42 chr5 149024008 149024173 -3513086 + CT-rich Low_complexity Low_complexity 3 163 0 5 1721 432 0 0 0 chr5 149024666 149024714 -3512545 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1721 405 0 0 0 chr5 149025794 149025839 -3511420 + (TG)n Simple_repeat Simple_repeat 1 45 0 5 1721 2184 231 41 12 chr5 149025841 149026328 -3510931 - RMER20A LTR ERVK -5 511 11 6 1721 234 0 0 0 chr5 149026493 149026519 -3510740 + (A)n Simple_repeat Simple_repeat 1 26 0 6 1721 1408 124 94 12 chr5 149027109 149027354 -3509905 - ORR1B1 LTR MaLR -89 305 41 6 1721 1325 106 21 0 chr5 149027817 149028006 -3509253 + B2_Mm2 SINE B2 1 193 -2 6 1721 214 327 59 0 chr5 149028464 149028565 -3508694 - MIR SINE MIR -148 114 8 6 1722 746 297 43 29 chr5 149029254 149029531 -3507728 + B4 SINE B4 2 282 -10 6 1722 263 221 176 0 chr5 149029757 149029825 -3507434 + MTD LTR MaLR 18 97 -322 6 1722 387 0 0 0 chr5 149029826 149029869 -3507390 + (TA)n Simple_repeat Simple_repeat 1 43 0 6 1722 255 374 35 30 chr5 149029891 149030092 -3507167 + L1M5 LINE L1 5654 5855 -385 6 1722 910 109 36 4 chr5 149030755 149030916 -3506343 - B2_Mm2 SINE B2 -9 184 1 6 1722 1781 144 121 12 chr5 149031898 149032101 -3505158 - MTC LTR MaLR -6 415 203 7 1722 308 0 37 37 chr5 149032101 149032155 -3505104 + (TA)n Simple_repeat Simple_repeat 2 55 0 7 1722 1781 144 121 12 chr5 149032155 149032281 -3504978 - MTC LTR MaLR -219 202 52 7 1722 564 157 0 0 chr5 149032281 149032328 -3504931 + polypyrimidine Low_complexity Low_complexity 56 102 0 7 1722 1599 6 0 0 chr5 149032328 149032508 -3504751 + (TTCTCC)n Simple_repeat Simple_repeat 1 180 0 7 1722 564 157 0 0 chr5 149032508 149032562 -3504697 + polypyrimidine Low_complexity Low_complexity 2 55 0 7 1722 1220 48 0 20 chr5 149032562 149032712 -3504547 - B1_Mus2 SINE Alu 0 147 1 7 1722 394 177 0 0 chr5 149032712 149032774 -3504485 - MTC LTR MaLR -357 62 1 7 1722 1373 178 147 29 chr5 149032774 149033116 -3504143 - MTD LTR MaLR -36 383 1 7 1722 421 340 18 12 chr5 149034222 149034386 -3502873 - ORR1E LTR MaLR -194 165 1 7 1722 468 0 0 0 chr5 149034903 149034955 -3502304 + (TG)n Simple_repeat Simple_repeat 1 52 0 7 1722 33113 86 3 8 chr5 149036379 149041274 -3495985 - L1_Mus1 LINE L1 0 6567 1736 7 1722 3325 48 5 0 chr5 149041274 149041668 -3495591 - MTA_Mm LTR MaLR 0 396 1 8 1722 33113 100 13 16 chr5 149041668 149042289 -3494970 - L1_Mus1 LINE L1 -4148 1735 1098 7 1722 1175 82 0 0 chr5 149042289 149042436 -3494823 - B1_Mm SINE Alu 0 147 1 8 1722 5018 123 67 62 chr5 149042436 149043203 -3494056 - L1_Mus1 LINE L1 -5519 1097 331 7 1722 2141 161 104 2 chr5 149043575 149043987 -3493272 - RMER17B LTR ERVK -4 954 501 8 1722 182 91 30 0 chr5 149044009 149044042 -3493217 + (TCTG)n Simple_repeat Simple_repeat 4 37 0 8 1722 1139 197 150 23 chr5 149044085 149044391 -3492868 - ORR1D2 LTR MaLR -21 349 5 8 1722 284 380 50 53 chr5 149044689 149044992 -3492267 - MER21B LTR ERV1 -355 508 207 8 1722 289 192 0 0 chr5 149045029 149045081 -3492178 - MTD LTR MaLR -321 98 47 8 1722 3228 22 3 3 chr5 149046373 149046738 -3490521 - RLTR10B2 LTR ERVK 0 365 1 8 1722 243 0 0 0 chr5 149049823 149049850 -3487409 + (TG)n Simple_repeat Simple_repeat 1 27 0 8 1722 189 74 0 0 chr5 149050739 149050766 -3486493 + (A)n Simple_repeat Simple_repeat 1 27 0 8 1722 1032 70 0 0 chr5 149051025 149051153 -3486106 - B1_Mus2 SINE Alu -19 128 1 9 1722 1802 122 96 34 chr5 149051515 149051923 -3485336 + RMER17C LTR ERVK 19 439 -519 9 1722 1159 107 44 22 chr5 149052166 149052348 -3484911 - B2_Mm2 SINE B2 -8 187 2 9 1722 539 244 130 5 chr5 149054089 149054327 -3482932 + L1MCa LINE L1 2248 2519 -3802 9 1722 1479 245 89 16 chr5 149054413 149054794 -3482465 + MTD LTR MaLR 11 419 0 9 1722 504 0 0 0 chr5 149055418 149055474 -3481785 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 9 1722 1214 36 0 0 chr5 149055474 149055612 -3481647 - B1_Mus1 SINE Alu -10 138 1 9 1722 1480 135 20 98 chr5 149055612 149055895 -3481364 - ORR1B1 LTR MaLR -8 386 124 9 1722 845 221 47 0 chr5 149056104 149056276 -3480983 + B3A SINE B2 1 180 -18 9 1722 245 304 43 0 chr5 149056580 149056649 -3480610 + ID4 SINE ID 1 72 -11 9 1722 252 0 0 0 chr5 149056650 149056678 -3480581 + (CA)n Simple_repeat Simple_repeat 1 28 0 1 1722 1940 144 42 0 chr5 149056830 149057136 -3480123 - ORR1B1 LTR MaLR 0 394 76 1 1722 314 215 12 60 chr5 149057129 149057213 -3480046 - ORR1B1 LTR MaLR -248 119 40 1 1722 345 182 0 61 chr5 149057229 149057311 -3479948 - ORR1B2 LTR MaLR -250 117 41 1 1722 352 186 7 71 chr5 149057279 149057411 -3479848 - ORR1B2 LTR MaLR -250 117 17 1 1722 308 167 0 62 chr5 149057411 149057475 -3479784 - ORR1B2 LTR MaLR -269 98 39 1 1722 384 195 18 89 chr5 149057449 149057591 -3479668 - ORR1B2 LTR MaLR -253 141 9 1 1722 366 182 0 100 chr5 149057599 149057708 -3479551 - ORR1B2 LTR MaLR -250 117 29 1 1722 352 204 0 57 chr5 149057691 149057891 -3479368 - ORR1B2 LTR MaLR -275 119 12 1 1722 303 190 0 33 chr5 149057891 149057951 -3479308 - ORR1B2 LTR MaLR -269 98 41 1 1722 503 214 13 107 chr5 149057949 149058159 -3479100 - ORR1B1 LTR MaLR -249 145 1 1 1722 1340 158 28 0 chr5 149058551 149058766 -3478493 + URR1A DNA MER1_type 6 226 0 1 1722 800 214 66 90 chr5 149059102 149059313 -3477946 - B3 SINE B2 -10 206 1 1 1722 775 180 17 40 chr5 149060993 149061167 -3476092 - RMER10B LTR ERVL 0 398 229 1 1722 1077 176 43 39 chr5 149062043 149062250 -3475009 + B3 SINE B2 2 209 -7 1 1722 354 222 25 3 chr5 149062471 149062562 -3474697 - MLT1A1 LTR MaLR -19 389 267 1 1722 370 246 33 66 chr5 149062634 149062756 -3474503 - MLT1A1 LTR MaLR -290 118 1 1 1722 1676 165 142 27 chr5 149063159 149063533 -3473726 + MTD LTR MaLR 3 419 0 1 1722 1404 40 0 0 chr5 149064620 149064795 -3472464 + (CA)n Simple_repeat Simple_repeat 1 175 0 1 1722 827 183 6 0 chr5 149064966 149065141 -3472118 + (CCCCAG)n Simple_repeat Simple_repeat 2 177 0 1 1722 3353 33 8 8 chr5 149065735 149066135 -3471124 + MTB LTR MaLR 1 400 0 1 1722 639 284 270 37 chr5 149066735 149067113 -3470146 - MER31B LTR ERV1 0 466 1 1 1722 249 250 40 0 chr5 149067648 149067724 -3469535 + CT-rich Low_complexity Low_complexity 1 79 0 1 1722 301 311 111 32 chr5 149067808 149068060 -3469199 + L1MDa LINE L1 1282 1553 -5080 1 1722 373 292 44 34 chr5 149068160 149068372 -3468887 + L1_Rod LINE L1 2483 2724 -3123 1 1722 799 224 94 35 chr5 149068391 149068471 -3468788 + B3 SINE B2 2 81 -135 1 1722 4201 169 117 23 chr5 149068471 149069301 -3467958 - RMER13B LTR ERVK 0 908 1 1 1722 799 224 94 35 chr5 149069301 149069423 -3467836 + B3 SINE B2 82 216 0 1 1722 1248 294 58 62 chr5 149069432 149070244 -3467015 + L1M2 LINE L1 3030 3838 -2305 1 1722 799 169 28 49 chr5 149070304 149070447 -3466812 + B1_Mur2 SINE Alu 1 140 -9 1 1722 210 143 0 28 chr5 149070679 149070715 -3466544 + G-rich Low_complexity Low_complexity 3 37 0 1 1722 185 324 65 56 chr5 149070849 149070957 -3466302 - L2 LINE L2 -601 2818 2710 1 1722 1099 228 158 59 chr5 149070975 149071348 -3465911 - MTD LTR MaLR 0 419 10 1 1722 649 320 64 91 chr5 149071355 149071761 -3465498 - MER47B DNA MER2_type -16 402 8 1 1722 496 175 68 26 chr5 149072469 149072571 -3464688 - ORR1D2 LTR MaLR 0 370 264 1 1722 552 233 32 32 chr5 149072571 149072695 -3464564 + B3 SINE B2 1 124 -92 1 1722 402 186 33 44 chr5 149072674 149072764 -3464495 + B1_Mur1 SINE Alu 61 149 0 1 1722 851 213 74 30 chr5 149072786 149072989 -3464270 - B3 SINE B2 -4 212 1 1 1722 857 305 98 52 chr5 149073834 149074201 -3463058 - RMER5 LTR ERV1 -72 462 79 1 1722 212 235 78 0 chr5 149074385 149074436 -3462823 + ID4_ SINE ID 1 55 -28 1 1722 244 289 51 15 chr5 149074447 149074584 -3462675 - L1M3 LINE L1 -344 5827 5686 1 1722 1688 184 52 35 chr5 149074727 149075094 -3462165 - ORR1D1 LTR MaLR -1 373 1 1 1722 420 104 0 0 chr5 149075303 149075370 -3461889 + (TG)n Simple_repeat Simple_repeat 2 68 0 1 1722 1569 217 30 75 chr5 149075374 149075812 -3461447 + RLTR28B LTR ERVL 64 481 0 1 1722 556 224 43 117 chr5 149075812 149075921 -3461338 - B3A SINE B2 -100 98 2 1 1722 407 141 13 0 chr5 149076662 149076740 -3460519 + (CTG)n Simple_repeat Simple_repeat 3 81 0 1 1722 267 31 0 0 chr5 149078104 149078136 -3459123 + (TG)n Simple_repeat Simple_repeat 1 32 0 1 1722 248 282 113 28 chr5 149078332 149078438 -3458821 + PB1 SINE Alu 1 115 -12 1 1722 396 0 0 0 chr5 149078441 149078485 -3458774 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1722 186 103 0 0 chr5 149078485 149078514 -3458745 + (GA)n Simple_repeat Simple_repeat 2 30 0 1 1722 516 220 14 0 chr5 149078536 149078645 -3458614 + B1_Mur3 SINE Alu 3 115 -34 1 1722 23 0 0 0 chr5 149079537 149079560 -3457699 + AT_rich Low_complexity Low_complexity 1 23 0 1 1722 189 0 0 0 chr5 149079783 149079804 -3457455 + (A)n Simple_repeat Simple_repeat 1 21 0 1 1722 1147 155 13 66 chr5 149079818 149080046 -3457213 + B3 SINE B2 1 216 0 1 1722 387 60 0 0 chr5 149080693 149080743 -3456516 + (CTTG)n Simple_repeat Simple_repeat 2 51 0 1 1722 496 243 27 0 chr5 149081762 149081873 -3455386 - PB1D10 SINE Alu -1 116 3 1 1722 927 217 22 22 chr5 149081979 149082163 -3455096 + B3A SINE B2 3 186 -12 1 1722 276 102 0 0 chr5 149082228 149082277 -3454982 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 1 1722 213 222 22 0 chr5 149082655 149082700 -3454559 + L2b LINE L2 3328 3373 -2 1 1722 3260 55 2 2 chr5 149083073 149083473 -3453786 - MTB LTR MaLR 0 400 1 1 1722 665 293 25 78 chr5 149084930 149084996 -3452263 + MER2 DNA MER2_type 41 107 -238 1 1722 1206 61 7 0 chr5 149084996 149085143 -3452116 - B1_Mus1 SINE Alu 0 148 1 1 1722 665 293 25 78 chr5 149085143 149085263 -3451996 + MER2 DNA MER2_type 108 219 -126 1 1722 1111 133 132 5 chr5 149085263 149085460 -3451799 + URR1A DNA MER1_type 5 226 0 1 1722 665 293 25 78 chr5 149085460 149085594 -3451665 + MER2 DNA MER2_type 220 344 -1 1 1722 252 86 0 0 chr5 149086189 149086224 -3451035 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1 1722 956 149 115 0 chr5 149086231 149086405 -3450854 + B2_Mm2 SINE B2 1 194 -1 1 1722 304 247 134 0 chr5 149086723 149086820 -3450439 - MLT1A0 LTR MaLR -59 306 197 1 1722 1197 190 18 0 chr5 149087025 149087246 -3450013 - URR1B DNA MER1_type 0 225 1 1 1722 1149 253 188 8 chr5 149087517 149087757 -3449502 - MTD LTR MaLR 0 419 120 1 1722 275 0 29 0 chr5 149087757 149087792 -3449467 + (CAAT)n Simple_repeat Simple_repeat 4 39 0 1 1722 1149 253 188 8 chr5 149087792 149087902 -3449357 - MTD LTR MaLR -300 119 7 1 1722 253 292 127 85 chr5 149087952 149088272 -3448987 - ORR1E LTR MaLR -19 346 4 1 1722 216 0 0 0 chr5 149088819 149088843 -3448416 + (TG)n Simple_repeat Simple_repeat 2 25 0 1 1722 21 0 0 0 chr5 149089151 149089172 -3448087 + AT_rich Low_complexity Low_complexity 1 21 0 1 1722 244 366 31 52 chr5 149089640 149089833 -3447426 - RMER4B LTR ERVK -372 213 25 1 1722 285 328 0 0 chr5 149090422 149090508 -3446751 - ID4_ SINE ID -55 97 12 1 1722 509 287 21 14 chr5 149090520 149090665 -3446594 - B1F SINE Alu -3 146 1 1 1722 1020 190 356 16 chr5 149092553 149092859 -3444400 - MTD LTR MaLR -2 417 8 1 1722 402 278 35 61 chr5 149094339 149094454 -3442805 - B3A SINE B2 -18 180 69 1 1722 579 29 0 0 chr5 149094992 149095061 -3442198 + (TC)n Simple_repeat Simple_repeat 1 69 0 1 1722 240 35 0 0 chr5 149095061 149095089 -3442170 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1722 1550 209 119 3 chr5 149095404 149095764 -3441495 - MTD LTR MaLR -3 416 15 1 1722 404 238 228 12 chr5 149096293 149096455 -3440804 + B3A SINE B2 2 198 0 1 1722 1155 52 0 0 chr5 149096462 149096597 -3440662 + B1_Mus1 SINE Alu 5 139 -9 1 1722 207 0 0 0 chr5 149096597 149096620 -3440639 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1 1722 414 69 0 0 chr5 149096652 149096710 -3440549 + (TA)n Simple_repeat Simple_repeat 2 59 0 1 1722 237 33 0 0 chr5 149097034 149097064 -3440195 + (CA)n Simple_repeat Simple_repeat 2 31 0 1 1722 2147 77 0 0 chr5 149097317 149097590 -3439669 - ORR1A2 LTR MaLR -1 326 54 1 1722 399 41 0 0 chr5 149097590 149097639 -3439620 + (TC)n Simple_repeat Simple_repeat 2 50 0 1 1722 1206 48 7 0 chr5 149097658 149097804 -3439455 - B1_Mm SINE Alu 0 147 1 1 1722 1176 195 5 19 chr5 149098612 149098821 -3438438 + B3 SINE B2 2 207 -9 1 1722 386 281 29 10 chr5 149098982 149099086 -3438173 - ORR1E LTR MaLR -253 106 1 1 1722 394 18 36 0 chr5 149099802 149099857 -3437402 + (TATG)n Simple_repeat Simple_repeat 3 59 0 1 1722 525 174 20 0 chr5 149100180 149100278 -3436981 - B1_Mur1 SINE Alu -7 142 43 1 1722 218 271 0 20 chr5 149100319 149100368 -3436891 - ID4_ SINE ID -28 55 8 1 1722 302 270 125 49 chr5 149100878 149101022 -3436237 - MIRb SINE MIR -7 261 107 1 1722 1426 237 82 9 chr5 149102031 149102371 -3434888 - ORR1D2 LTR MaLR -3 367 3 1 1722 868 256 0 11 chr5 149103262 149103444 -3433815 - B3A SINE B2 -18 180 1 1 1722 711 101 15 30 chr5 149103741 149103874 -3433385 + (GGGAGA)n Simple_repeat Simple_repeat 3 133 0 1 1722 1141 169 87 5 chr5 149103901 149104109 -3433150 + URR1A DNA MER1_type 2 226 0 1 1722 245 311 22 0 chr5 149104262 149104352 -3432907 + ORR1E LTR MaLR 1 92 -267 1 1722 680 244 68 6 chr5 149104340 149104517 -3432742 + B3A SINE B2 7 194 -4 1 1722 871 188 30 45 chr5 149104518 149104719 -3432540 + B3 SINE B2 1 198 0 1 1722 404 278 136 93 chr5 149104720 149104978 -3432281 + ORR1E LTR MaLR 80 348 -11 1 1722 337 291 138 50 chr5 149105006 149105165 -3432094 + B3A SINE B2 1 173 -25 1 1722 1117 71 14 0 chr5 149105722 149105863 -3431396 + B1_Mur4 SINE Alu 1 143 -7 1 1722 249 276 38 38 chr5 149105957 149106036 -3431223 + ID4 SINE ID 1 79 -4 1 1722 412 263 120 35 chr5 149106297 149106439 -3430820 + MIRb SINE MIR 23 176 -92 1 1722 852 138 13 74 chr5 149106651 149106800 -3430459 - B1_Mur4 SINE Alu -9 141 2 1 1722 943 121 43 0 chr5 149107717 149107858 -3429401 - B1_Mur4 SINE Alu -2 148 2 2 1722 916 202 119 0 chr5 149108613 149108806 -3428453 + B3 SINE B2 1 216 0 2 1722 180 327 36 0 chr5 149109984 149110039 -3427220 - L2c LINE L2 -40 3347 3291 2 1722 1010 142 0 7 chr5 149110236 149110385 -3426874 - B1_Mus1 SINE Alu 0 148 1 2 1722 330 287 77 35 chr5 149111041 149111212 -3426047 + MIRb SINE MIR 32 208 -68 2 1722 551 211 112 56 chr5 149111654 149111815 -3425444 + B4 SINE B4 29 198 -94 2 1722 915 86 0 0 chr5 149111715 149111832 -3425427 + B1_Mus1 SINE Alu 9 125 -23 2 1722 283 202 19 136 chr5 149111747 149111850 -3425409 + RLTR25B LTR ERVK 441 531 -497 2 1722 1089 203 265 6 chr5 149112400 149112580 -3424679 - MTD LTR MaLR -1 418 211 2 1722 203 0 0 36 chr5 149112590 149112618 -3424641 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2 1722 1253 34 0 20 chr5 149112618 149112757 -3424502 - B1_Mus1 SINE Alu -9 139 1 2 1722 1089 203 265 6 chr5 149112757 149112908 -3424351 - MTD LTR MaLR -209 210 1 2 1722 941 121 23 0 chr5 149113641 149113815 -3423444 + (TCC)n Simple_repeat Simple_repeat 2 179 0 2 1722 952 137 0 7 chr5 149114029 149114169 -3423090 + B1_Mus1 SINE Alu 1 139 -9 2 1722 983 149 189 22 chr5 149114196 149114381 -3422878 + B3 SINE B2 1 216 0 2 1722 340 329 77 57 chr5 149114510 149114583 -3422676 - Lx9 LINE L1 -73 7400 7335 2 1722 225 0 0 0 chr5 149114583 149114608 -3422651 + (CAGA)n Simple_repeat Simple_repeat 3 27 0 2 1722 400 314 84 21 chr5 149114608 149114787 -3422472 - Lx9 LINE L1 -195 7449 7148 2 1722 348 260 62 39 chr5 149115600 149115728 -3421531 - MLT1A0 LTR MaLR -234 131 1 2 1722 539 253 168 7 chr5 149115839 149115994 -3421265 - B3A SINE B2 -18 180 1 2 1722 355 313 10 0 chr5 149116251 149116350 -3420909 - PB1D10 SINE Alu -17 100 1 2 1722 3469 35 2 0 chr5 149116880 149117275 -3419984 + MTA_Mm LTR MaLR 1 396 0 2 1722 306 298 7 78 chr5 149117324 149117477 -3419782 + B1F SINE Alu 3 144 -5 2 1722 279 79 0 0 chr5 149117903 149117941 -3419318 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 1722 198 0 0 0 chr5 149117941 149117962 -3419297 + (GA)n Simple_repeat Simple_repeat 2 23 0 2 1722 232 273 143 86 chr5 149117977 149118117 -3419142 - MER112 DNA MER1_type -113 148 1 2 1722 241 359 8 0 chr5 149118819 149118936 -3418323 + (CA)n Simple_repeat Simple_repeat 2 119 0 2 1722 3851 69 24 4 chr5 149119033 149119566 -3417693 - LTRIS_Mus LTR ERV1 -114 473 1 2 1722 6045 122 20 25 chr5 149119566 149120306 -3416953 - MuRRS-int LTR ERV1 0 4690 3971 2 1722 3217 28 0 3 chr5 149120306 149120664 -3416595 - IAPEY2_LTR LTR ERVK 0 357 1 2 1722 6045 122 20 25 chr5 149120664 149120872 -3416387 - MuRRS-int LTR ERV1 -720 3970 3747 2 1722 3673 127 10 39 chr5 149120919 149121641 -3415618 - MuRRS-int LTR ERV1 -1021 3669 3121 2 1722 5201 255 88 38 chr5 149121630 149123079 -3414180 - MuRRS-int LTR ERV1 -3147 1916 356 2 1722 342 0 0 0 chr5 149123079 149123117 -3414142 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 1722 5201 255 88 38 chr5 149123117 149123488 -3413771 - MuRRS-int LTR ERV1 -4708 355 6 2 1722 4757 65 2 10 chr5 149123489 149124081 -3413178 - LTRIS_Mus LTR ERV1 0 587 1 2 1722 1152 196 14 9 chr5 149124098 149124309 -3412950 + B3 SINE B2 2 213 -3 2 1722 306 0 0 0 chr5 149124351 149124385 -3412874 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 1722 227 217 96 40 chr5 149124452 149124543 -3412716 - L2c LINE L2 -79 3308 3227 2 1722 213 121 0 0 chr5 149125644 149125677 -3411582 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 2 1722 283 216 26 121 chr5 149127768 149127884 -3409375 - ORR1D1 LTR MaLR -269 105 1 2 1722 3189 42 0 10 chr5 149128018 149128403 -3408856 - MTA_Mm LTR MaLR 0 396 16 2 1722 1287 76 20 10 chr5 149128408 149128608 -3408651 - MTA_Mm-int LTR MaLR 0 1098 897 2 1722 2152 102 87 0 chr5 149128608 149128943 -3408316 + L1Md_F2 LINE L1 595 958 -5661 2 1722 1071 66 43 7 chr5 149128943 149129081 -3408178 + B1_Mus2 SINE Alu 5 147 0 2 1722 405 136 0 0 chr5 149129085 149129151 -3408108 + (GAAA)n Simple_repeat Simple_repeat 3 68 0 2 1722 29850 70 37 5 chr5 149129155 149132828 -3404431 + L1Md_F2 LINE L1 828 4734 -1152 2 1722 216 0 0 0 chr5 149132828 149132852 -3404407 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2 1722 29850 67 40 6 chr5 149132852 149133697 -3403562 + L1Md_F2 LINE L1 4735 5586 -300 2 1722 7878 57 16 2 chr5 149133699 149134667 -3402592 + L1Md_F2 LINE L1 5590 6571 -14 2 1722 6228 54 78 2 chr5 149134673 149135524 -3401735 - MTA_Mm-int LTR MaLR -177 921 7 2 1722 3215 46 3 3 chr5 149135522 149135913 -3401346 - MTA_Mm LTR MaLR -5 391 1 2 1722 854 131 15 0 chr5 149137143 149137187 -3400072 - B1_Mur4 SINE Alu 0 150 19 2 1722 311 225 0 119 chr5 149137187 149137273 -3399986 - MT2B LTR ERVL -344 257 182 2 1722 240 35 0 0 chr5 149137273 149137302 -3399957 + (CCA)n Simple_repeat Simple_repeat 1 29 0 2 1722 311 225 0 119 chr5 149137302 149137316 -3399943 - MT2B LTR ERVL -420 181 169 2 1722 2541 112 259 6 chr5 149137451 149137918 -3399341 - RMER4B LTR ERVK 0 585 1 2 1722 3055 36 3 64 chr5 149138083 149138472 -3398787 - RLTR10B2 LTR ERVK 0 365 1 2 1722 327 49 0 0 chr5 149138505 149138546 -3398713 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 2 1722 32 0 0 0 chr5 149139890 149139922 -3397337 + AT_rich Low_complexity Low_complexity 1 32 0 2 1722 495 0 0 0 chr5 149141423 149141478 -3395781 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 1722 412 195 217 17 chr5 149141950 149142065 -3395194 + B1F1 SINE Alu 6 143 -6 2 1722 387 0 0 0 chr5 149142116 149142159 -3395100 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 1722 258 289 0 50 chr5 149142468 149142548 -3394711 - ID4 SINE ID -7 76 1 2 1722 296 48 0 23 chr5 149145715 149145758 -3391501 + (TTA)n Simple_repeat Simple_repeat 3 44 0 2 1722 304 333 41 8 chr5 149146244 149146365 -3390894 + L1MC3 LINE L1 6522 6646 -1139 2 1722 894 128 17 0 chr5 149146393 149146565 -3390694 + (TA)n Simple_repeat Simple_repeat 2 176 0 2 1722 1335 41 18 0 chr5 149146594 149146764 -3390495 + L1Md_A LINE L1 6406 6578 -4 2 1722 1403 59 48 16 chr5 149147720 149147909 -3389350 + B2_Mm2 SINE B2 1 195 0 2 1722 504 0 0 0 chr5 149148982 149149038 -3388221 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1722 255 289 89 38 chr5 149149111 149149190 -3388069 - MIRc SINE MIR -172 96 14 2 1722 240 224 81 12 chr5 149149213 149149299 -3387960 + (TCCA)n Simple_repeat Simple_repeat 3 94 0 2 1722 212 200 56 0 chr5 149149341 149149466 -3387793 + (TCCA)n Simple_repeat Simple_repeat 1 132 0 2 1722 1290 105 39 0 chr5 149150793 149150974 -3386285 - B2_Mm2 SINE B2 -7 188 1 2 1722 201 147 0 0 chr5 149151347 149151381 -3385878 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 1722 183 100 0 0 chr5 149151423 149151453 -3385806 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 1722 1118 69 27 20 chr5 149151466 149151613 -3385646 - B1_Mus1 SINE Alu 0 148 1 2 1722 955 212 69 20 chr5 149151688 149151855 -3385404 + B3 SINE B2 2 166 -50 2 1722 180 0 0 0 chr5 149151855 149151875 -3385384 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 1722 955 212 69 20 chr5 149151875 149151909 -3385350 + B3 SINE B2 167 213 -3 2 1722 288 155 0 0 chr5 149152605 149152676 -3384583 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1722 408 250 52 0 chr5 149152874 149152970 -3384289 + Tigger7 DNA MER2_type 7 107 -2384 2 1722 1016 93 66 0 chr5 149152999 149153128 -3384131 + B2_Mm2 SINE B2 2 162 -33 2 1722 377 283 158 20 chr5 149153128 149153150 -3384109 + Tigger7 DNA MER2_type 2257 2278 -213 2 1722 216 0 0 0 chr5 149153150 149153174 -3384085 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2 1722 377 283 158 20 chr5 149153174 149153264 -3383995 + Tigger7 DNA MER2_type 2279 2370 -121 2 1722 372 22 0 0 chr5 149153264 149153309 -3383950 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1722 377 283 158 20 chr5 149153309 149153397 -3383862 + Tigger7 DNA MER2_type 2371 2485 -6 2 1722 1258 71 65 0 chr5 149154783 149154952 -3382307 + B2_Mm2 SINE B2 2 181 -14 2 1722 292 103 471 37 chr5 149155184 149155288 -3381971 + B2_Mm2 SINE B2 47 195 0 2 1722 566 201 84 22 chr5 149155510 149155666 -3381593 + MTD LTR MaLR 206 385 -36 2 1722 301 310 0 11 chr5 149157088 149157176 -3380083 + B1_Mur4 SINE Alu 47 133 -17 2 1722 221 0 0 33 chr5 149157192 149157222 -3380037 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 2 1722 209 176 0 0 chr5 149158203 149158237 -3379022 + (CACG)n Simple_repeat Simple_repeat 3 36 0 2 1722 230 263 51 26 chr5 149159498 149159576 -3377683 + ID4 SINE ID 4 83 0 2 1722 246 75 36 36 chr5 149159611 149159666 -3377593 + (CCCCCA)n Simple_repeat Simple_repeat 2 56 0 2 1723 353 235 255 35 chr5 149160189 149160330 -3376929 + Tigger5 DNA MER2_type 35 206 -2200 2 1723 332 318 34 0 chr5 149160454 149160542 -3376717 - PB1D7 SINE Alu -6 114 24 2 1723 183 100 0 0 chr5 149161369 149161399 -3375860 + (CCTG)n Simple_repeat Simple_repeat 4 33 0 2 1723 2090 83 86 7 chr5 149162642 149162944 -3374315 + ORR1A2 LTR MaLR 1 326 -1 2 1723 1699 221 64 5 chr5 149163068 149163460 -3373799 + MTD LTR MaLR 5 419 0 2 1723 1217 148 113 0 chr5 149164435 149164638 -3372621 + URR1A DNA MER1_type 1 226 0 2 1723 917 83 0 0 chr5 149165662 149165783 -3371476 - B2_Mm2 SINE B2 -71 124 4 2 1723 440 216 50 40 chr5 149166729 149166830 -3370429 + B3A SINE B2 50 151 -47 2 1723 716 101 8 0 chr5 149166830 149166959 -3370300 + (TG)n Simple_repeat Simple_repeat 1 130 0 2 1723 244 294 67 87 chr5 149166959 149167006 -3370253 + B2_Mm2 SINE B2 156 195 0 2 1723 847 118 74 0 chr5 149167008 149167143 -3370116 + B1_Mus2 SINE Alu 2 146 -1 2 1723 32 0 0 0 chr5 149167168 149167200 -3370059 + AT_rich Low_complexity Low_complexity 1 32 0 2 1723 226 271 0 25 chr5 149168068 149168314 -3368945 + GA-rich Low_complexity Low_complexity 1 239 0 2 1723 1039 188 17 16 chr5 149168554 149168761 -3368498 + B3 SINE B2 1 187 -8 2 1723 292 182 18 0 chr5 149169295 149169350 -3367909 - MTEa LTR MaLR -25 354 299 2 1723 274 264 21 52 chr5 149169905 149170001 -3367258 + B3 SINE B2 114 206 -10 2 1723 246 307 21 21 chr5 149170939 149171046 -3366213 - MIRb SINE MIR -150 118 7 2 1723 223 310 0 40 chr5 149171105 149171179 -3366080 - ID2 SINE ID 0 83 13 2 1723 203 133 0 0 chr5 149171439 149171469 -3365790 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 1723 1139 70 0 0 chr5 149171707 149171849 -3365410 + B1_Mus1 SINE Alu 1 142 -6 2 1723 765 33 0 0 chr5 149171851 149171943 -3365316 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 2 1723 279 0 0 0 chr5 149173659 149173690 -3363569 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 1723 333 0 0 0 chr5 149174256 149174293 -3362966 + (CA)n Simple_repeat Simple_repeat 2 38 0 2 1723 614 259 7 33 chr5 149174385 149174537 -3362722 + B1_Mur1 SINE Alu 2 149 0 2 1723 186 279 0 42 chr5 149174569 149174640 -3362619 + L2 LINE L2 782 849 -2570 3 1723 215 291 17 34 chr5 149174685 149174753 -3362506 - L2b LINE L2 -11 3415 3308 3 1723 264 122 0 0 chr5 149175055 149175096 -3362163 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1723 435 38 0 0 chr5 149175951 149176004 -3361255 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 1723 22 0 0 0 chr5 149176163 149176185 -3361074 + AT_rich Low_complexity Low_complexity 1 22 0 3 1723 417 160 51 39 chr5 149176197 149176275 -3360984 - B1_Mur2 SINE Alu 0 149 71 3 1723 397 143 119 0 chr5 149176270 149176354 -3360905 - B1_Mur1 SINE Alu -22 127 34 3 1723 270 0 0 0 chr5 149177903 149177933 -3359326 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 1723 396 0 0 0 chr5 149177933 149177976 -3359283 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1723 753 234 109 44 chr5 149178098 149178419 -3358840 - Lx8 LINE L1 -136 7337 6996 3 1723 349 324 49 14 chr5 149178494 149178638 -3358621 + MTD LTR MaLR 1 149 -210 3 1723 604 204 223 11 chr5 149178763 149178951 -3358308 + MTD LTR MaLR 192 419 0 3 1723 204 125 0 0 chr5 149179135 149179167 -3358092 + (TGGG)n Simple_repeat Simple_repeat 1 32 0 3 1723 965 190 113 18 chr5 149179239 149179529 -3357730 - Lx4B LINE L1 0 7058 6677 3 1723 1102 158 58 19 chr5 149179815 149179990 -3357269 - URR1B DNA MER1_type -10 215 43 3 1723 498 61 0 0 chr5 149179990 149180056 -3357203 + (CA)n Simple_repeat Simple_repeat 2 67 0 3 1723 1102 158 58 19 chr5 149180056 149180087 -3357172 - URR1B DNA MER1_type -183 42 1 3 1723 1410 35 29 6 chr5 149180349 149180523 -3356736 + B2_Mm2 SINE B2 3 180 -15 3 1723 396 0 0 0 chr5 149180523 149180567 -3356692 + (GAAA)n Simple_repeat Simple_repeat 3 46 0 3 1723 875 184 13 0 chr5 149180830 149180988 -3356271 + B3 SINE B2 1 160 -56 3 1723 268 294 22 66 chr5 149181619 149181710 -3355549 + PB1D10 SINE Alu 17 103 -14 3 1723 21 0 0 0 chr5 149181840 149181861 -3355398 + AT_rich Low_complexity Low_complexity 1 21 0 3 1723 186 103 0 0 chr5 149182282 149182311 -3354948 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 3 1723 1040 146 87 15 chr5 149182336 149182531 -3354728 - B3 SINE B2 -7 209 1 3 1723 509 224 35 0 chr5 149182638 149182754 -3354505 + PB1D7 SINE Alu 1 120 0 3 1723 2461 145 17 72 chr5 149183130 149183651 -3353608 + RLTR31A_Mm LTR ERVK 2 557 0 3 1723 2311 153 50 60 chr5 149184025 149184435 -3352824 + RLTR28B LTR ERVL 4 412 -69 3 1723 1499 58 16 0 chr5 149184435 149184623 -3352636 + B2_Mm2 SINE B2 1 191 -4 3 1723 2311 153 50 60 chr5 149184623 149184692 -3352567 + RLTR28B LTR ERVL 413 478 -3 3 1723 229 79 26 0 chr5 149184711 149184749 -3352510 + L1M4 LINE L1 5712 5750 -428 3 1723 391 314 131 42 chr5 149184838 149185109 -3352150 + L1MB8 LINE L1 5916 6178 0 3 1723 612 207 200 0 chr5 149186688 149186823 -3350436 + B3A SINE B2 1 162 -36 3 1723 432 37 0 0 chr5 149186830 149186884 -3350375 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 1723 258 185 259 0 chr5 149187113 149187194 -3350065 + MTE2a LTR MaLR 278 379 0 3 1723 591 267 22 38 chr5 149187391 149187574 -3349685 - B3A SINE B2 -18 180 1 3 1723 359 283 10 39 chr5 149187606 149187709 -3349550 + B3 SINE B2 103 202 -14 3 1723 1184 164 25 0 chr5 149188008 149188209 -3349050 + B3 SINE B2 1 206 -10 3 1723 296 182 242 0 chr5 149188218 149188284 -3348975 + B1_Mur3 SINE Alu 8 89 -60 3 1723 610 255 27 14 chr5 149188502 149188649 -3348610 + B1_Mur1 SINE Alu 1 149 0 3 1723 28 0 0 0 chr5 149188785 149188813 -3348446 + AT_rich Low_complexity Low_complexity 1 28 0 3 1723 668 196 9 0 chr5 149189585 149189697 -3347562 + B1_Mur1 SINE Alu 2 114 -35 3 1723 361 289 14 79 chr5 149189589 149189728 -3347531 + MT2B LTR ERVL 170 299 -302 3 1723 3352 53 2 0 chr5 149190020 149190419 -3346840 + MTB LTR MaLR 1 400 0 3 1723 869 73 0 0 chr5 149190712 149190822 -3346437 + B2_Mm2 SINE B2 1 110 -85 3 1723 590 273 65 18 chr5 149191535 149191703 -3345556 - MTEb LTR MaLR 0 379 204 3 1723 971 166 69 0 chr5 149191706 149191881 -3345378 - B3 SINE B2 0 216 30 3 1723 744 98 14 37 chr5 149191898 149192032 -3345227 - B1_Mur4 SINE Alu 0 150 11 3 1723 492 247 99 35 chr5 149192066 149192150 -3345109 - MTEb LTR MaLR -196 183 98 3 1723 1216 40 0 0 chr5 149192150 149192301 -3344958 - L1Md_A LINE L1 0 6582 6432 3 1723 492 247 99 35 chr5 149192301 149192388 -3344871 - MTEb LTR MaLR -282 97 1 3 1723 208 294 0 0 chr5 149192893 149192944 -3344315 + GA-rich Low_complexity Low_complexity 3 53 0 3 1723 585 195 121 8 chr5 149193010 149193134 -3344125 - B1_Mur2 SINE Alu -1 148 11 3 1723 279 54 0 0 chr5 149193143 149193180 -3344079 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 3 1723 766 137 0 58 chr5 149193181 149193320 -3343939 + B1_Mur2 SINE Alu 19 149 0 3 1723 492 73 321 27 chr5 149193339 149193451 -3343808 - B2_Mm2 SINE B2 -3 192 48 3 1723 1324 85 23 0 chr5 149193523 149193699 -3343560 - B2_Mm2 SINE B2 -15 180 1 3 1723 1041 192 9 88 chr5 149194413 149194641 -3342618 + B3 SINE B2 1 210 -6 3 1723 909 179 81 10 chr5 149194769 149194966 -3342293 + RLTR11A LTR ERVK 1 211 -317 3 1723 565 215 22 29 chr5 149194958 149195097 -3342162 + RLTR11A LTR ERVK 385 522 -6 3 1723 24 0 0 0 chr5 149196123 149196147 -3341112 + AT_rich Low_complexity Low_complexity 1 24 0 3 1723 21 0 0 0 chr5 149197223 149197244 -3340015 + AT_rich Low_complexity Low_complexity 1 21 0 3 1723 1503 241 107 13 chr5 149198209 149198584 -3338675 + MTD LTR MaLR 1 410 -9 3 1723 917 171 7 0 chr5 149199147 149199293 -3337966 + B1_Mus2 SINE Alu 1 147 0 3 1723 568 252 0 0 chr5 149199324 149199435 -3337824 + B1_Mur1 SINE Alu 1 111 -38 3 1723 593 236 80 90 chr5 149199473 149199673 -3337586 + B3A SINE B2 1 198 0 3 1723 283 302 57 40 chr5 149200635 149200811 -3336448 - Tigger15a DNA TcMar -280 435 257 3 1723 268 258 51 51 chr5 149201018 149201116 -3336143 + MER5A1 DNA MER1_type 49 146 -20 3 1723 720 187 24 0 chr5 149202183 149202306 -3334953 + RSINE1 SINE B4 4 129 -36 3 1723 328 299 120 63 chr5 149202306 149202358 -3334901 + B2_Mm1t SINE B2 3 187 -6 3 1723 21 57 0 0 chr5 149202405 149202440 -3334819 + AT_rich Low_complexity Low_complexity 1 35 0 3 1723 375 23 0 0 chr5 149202440 149202484 -3334775 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 1723 308 282 35 0 chr5 149202485 149202559 -3334700 - L1MC4a LINE L1 -1203 6679 6603 3 1723 207 0 0 0 chr5 149202559 149202582 -3334677 + (GA)n Simple_repeat Simple_repeat 2 24 0 3 1723 256 292 45 0 chr5 149203265 149203354 -3333905 + Charlie9 DNA MER1_type 2660 2752 -5 3 1723 989 58 42 28 chr5 149206687 149206829 -3330430 + B2_Mm2 SINE B2 2 145 -50 3 1723 530 96 14 0 chr5 149206830 149206921 -3330338 + B1_Mus2 SINE Alu 52 147 -3 3 1723 3869 112 19 50 chr5 149206986 149207606 -3329653 - MT2B LTR ERVL 0 601 1 3 1723 789 235 106 0 chr5 149207843 149208022 -3329237 + B3 SINE B2 6 203 -13 3 1723 501 151 0 0 chr5 149208024 149208110 -3329149 + (TA)n Simple_repeat Simple_repeat 1 86 0 3 1723 715 203 7 45 chr5 149208130 149208285 -3328974 + B1_Mur1 SINE Alu 1 149 0 3 1723 318 259 136 0 chr5 149208309 149208390 -3328869 + PB1D10 SINE Alu 4 95 -22 3 1723 243 0 0 0 chr5 149208394 149208421 -3328838 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 3 1723 699 247 40 40 chr5 149208473 149208671 -3328588 + B3A SINE B2 1 198 0 3 1723 188 288 45 0 chr5 149208762 149208828 -3328431 + L2 LINE L2 2579 2647 -772 3 1723 258 217 0 0 chr5 149208854 149208900 -3328359 + tRNA-Ala-GCA tRNA tRNA 22 67 -8 3 1723 1308 148 5 5 chr5 149208985 149209195 -3328064 + URR1A DNA MER1_type 17 226 0 3 1723 405 239 128 50 chr5 149209589 149209730 -3327529 + ID_B1 SINE B4 36 187 -37 3 1723 22 0 0 0 chr5 149209858 149209880 -3327379 + AT_rich Low_complexity Low_complexity 1 22 0 3 1723 497 185 401 7 chr5 149211979 149212131 -3325128 + B3 SINE B2 2 213 -3 3 1723 1128 78 14 0 chr5 149212152 149212293 -3324966 + B1_Mus1 SINE Alu 1 143 -5 3 1723 829 165 6 6 chr5 149212294 149212459 -3324800 + GA-rich Low_complexity Low_complexity 4 168 0 3 1723 265 47 47 0 chr5 149213293 149213336 -3323923 + (TTTTTG)n Simple_repeat Simple_repeat 6 50 0 3 1723 882 143 13 20 chr5 149213336 149213486 -3323773 - B1_Mur2 SINE Alu 0 149 1 3 1723 297 0 0 0 chr5 149213526 149213559 -3323700 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1723 625 323 53 23 chr5 149213590 149213856 -3323403 - B4A SINE B4 -18 274 1 3 1723 643 198 135 0 chr5 149213885 149214011 -3323248 + B1_Mus1 SINE Alu 1 143 -5 3 1723 719 204 160 0 chr5 149214047 149214228 -3323031 - B3 SINE B2 -6 210 1 3 1723 944 116 61 6 chr5 149214449 149214614 -3322645 + ORR1B2 LTR MaLR 4 177 -190 3 1723 351 113 0 0 chr5 149214614 149214667 -3322592 + (TC)n Simple_repeat Simple_repeat 2 54 0 3 1723 843 79 142 0 chr5 149214691 149214818 -3322441 - B2_Mm2 SINE B2 -50 145 1 3 1723 682 161 106 144 chr5 149214819 149214950 -3322309 + ORR1B2 LTR MaLR 212 341 -53 3 1723 658 227 70 0 chr5 149214950 149215078 -3322181 + B1_Mur3 SINE Alu 2 138 -11 3 1723 682 161 106 144 chr5 149215078 149215134 -3322125 + ORR1B2 LTR MaLR 342 392 -2 3 1723 1177 199 0 0 chr5 149215652 149215853 -3321406 + B3 SINE B2 3 203 -13 3 1723 557 231 108 65 chr5 149215872 149216057 -3321202 - B3A SINE B2 -4 194 2 3 1723 486 279 38 3 chr5 149216198 149216366 -3320893 + ORR1D2 LTR MaLR 1 177 -207 3 1723 340 200 0 0 chr5 149216336 149216391 -3320868 + ORR1D2 LTR MaLR 316 370 -4 3 1723 659 132 47 205 chr5 149216396 149216521 -3320738 + B1_Mur4 SINE Alu 6 114 -36 3 1723 2187 134 96 59 chr5 149216521 149216979 -3320280 - IAPLTR2_Mm LTR ERVK 0 475 1 3 1723 659 132 47 205 chr5 149216979 149217024 -3320235 + B1_Mur4 SINE Alu 115 149 -1 3 1723 300 188 0 0 chr5 149217024 149217088 -3320171 + GA-rich Low_complexity Low_complexity 1 64 0 4 1723 453 193 421 0 chr5 149217124 149217269 -3319990 + B3 SINE B2 1 206 -10 4 1723 311 299 0 0 chr5 149217290 149217367 -3319892 + L1MC LINE L1 5017 5093 -1053 4 1723 387 0 0 0 chr5 149217412 149217455 -3319804 + (TG)n Simple_repeat Simple_repeat 2 44 0 4 1723 465 169 191 0 chr5 149217456 149217545 -3319714 - B1_Mur4 SINE Alu -42 108 3 4 1723 1553 133 0 4 chr5 149217950 149218176 -3319083 - URR1B DNA MER1_type 0 225 1 4 1723 421 217 8 129 chr5 149218428 149218560 -3318699 + MT2B LTR ERVL 153 268 -333 4 1723 672 209 0 3 chr5 149218443 149218577 -3318682 + B1_Mus1 SINE Alu 1 130 -17 4 1723 402 200 38 0 chr5 149218612 149218692 -3318567 - B3 SINE B2 -10 206 124 4 1723 560 178 69 0 chr5 149218969 149219070 -3318189 - PB1D9 SINE Alu -12 108 1 4 1723 203 174 0 92 chr5 149219397 149219473 -3317786 + T-rich Low_complexity Low_complexity 2 70 0 4 1723 873 29 0 0 chr5 149219686 149219790 -3317469 + (TTC)n Simple_repeat Simple_repeat 1 104 0 4 1723 1190 113 6 0 chr5 149219793 149219961 -3317298 - B2_Mm2 SINE B2 -26 169 1 4 1723 489 257 9 0 chr5 149220026 149220139 -3317120 + PB1D9 SINE Alu 2 115 -5 4 1723 328 218 248 0 chr5 149220182 149220283 -3316976 + B3A SINE B2 5 130 -68 4 1723 395 354 26 92 chr5 149220392 149220663 -3316596 + MLT1B LTR MaLR 126 378 -12 4 1723 222 37 0 0 chr5 149220779 149220806 -3316453 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 4 1723 282 194 0 0 chr5 149220838 149220900 -3316359 + CT-rich Low_complexity Low_complexity 1 62 0 4 1723 813 124 0 8 chr5 149220900 149221030 -3316229 - B1_Mur4 SINE Alu -21 129 1 4 1723 216 372 11 11 chr5 149221267 149221362 -3315897 + MIRb SINE MIR 20 114 -154 4 1723 269 287 64 80 chr5 149221790 149221915 -3315344 + RSINE1 SINE B4 43 165 0 4 1723 260 281 122 0 chr5 149222101 149222183 -3315076 - PB1D10 SINE Alu -34 115 24 4 1723 1466 190 174 112 chr5 149222802 149222851 -3314408 - MT2A LTR ERVL -4 529 486 4 1723 198 0 0 0 chr5 149222851 149222873 -3314386 + (TC)n Simple_repeat Simple_repeat 1 22 0 4 1723 1466 190 174 112 chr5 149222873 149223316 -3313943 - MT2A LTR ERVL -48 485 6 4 1723 1602 232 88 10 chr5 149223528 149223916 -3313343 + MTD LTR MaLR 2 419 0 4 1723 1379 134 123 58 chr5 149224103 149224412 -3312847 - ORR1A4 LTR MaLR 0 329 1 4 1723 492 99 0 0 chr5 149224849 149224920 -3312339 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 4 1723 1244 80 97 0 chr5 149224922 149225098 -3312161 - B2_Mm2 SINE B2 -1 194 2 4 1723 294 280 121 52 chr5 149226121 149226255 -3311004 + B4 SINE B4 84 227 -65 4 1723 698 244 25 12 chr5 149226259 149226421 -3310838 + RSINE1 SINE B4 2 165 0 4 1723 304 221 0 85 chr5 149226464 149226558 -3310701 + B4A SINE B4 204 289 -3 4 1723 278 159 0 0 chr5 149226684 149226728 -3310531 - RMER21B LTR ERV1 -277 565 522 4 1723 298 240 0 0 chr5 149226736 149226811 -3310448 + GA-rich Low_complexity Low_complexity 2 76 0 4 1723 469 181 22 50 chr5 149227115 149227295 -3309964 + GA-rich Low_complexity Low_complexity 3 177 0 4 1723 789 148 6 13 chr5 149227308 149227466 -3309793 + GA-rich Low_complexity Low_complexity 1 157 0 4 1723 359 216 22 22 chr5 149228227 149228317 -3308942 + PB1D10 SINE Alu 23 112 -5 4 1723 229 343 0 69 chr5 149228327 149228399 -3308860 + ID4_ SINE ID 3 69 -14 4 1723 219 188 0 0 chr5 149228802 149228850 -3308409 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 4 1723 384 245 241 36 chr5 149229205 149229400 -3307859 + L1M4b LINE L1 1917 2151 -5183 4 1723 1259 128 41 5 chr5 149229406 149229603 -3307656 + B3 SINE B2 1 204 -12 4 1723 708 221 5 102 chr5 149229800 149229916 -3307343 - RLTR20C LTR ERVK 0 578 480 4 1723 423 0 0 0 chr5 149229916 149229963 -3307296 + (CA)n Simple_repeat Simple_repeat 1 47 0 4 1723 1060 194 87 58 chr5 149229963 149230321 -3306938 - RLTR20C LTR ERVK -99 479 1 4 1723 1547 130 165 44 chr5 149231888 149231958 -3305301 + ORR1B1 LTR MaLR 1 100 -294 4 1723 2571 73 173 145 chr5 149231958 149232456 -3304803 - RLTR1B LTR ERV1 0 512 1 4 1723 1547 130 165 44 chr5 149232456 149232700 -3304559 + ORR1B1 LTR MaLR 101 352 -42 4 1723 240 35 0 0 chr5 149232703 149232732 -3304527 + (CAGA)n Simple_repeat Simple_repeat 4 32 0 4 1723 802 262 5 24 chr5 149232765 149232972 -3304287 + Lx6 LINE L1 7173 7375 -85 4 1723 2237 250 32 8 chr5 149232962 149233547 -3303712 - Lx5 LINE L1 -702 6348 5750 4 1723 286 125 0 127 chr5 149233552 149233564 -3303695 + ORR1A4 LTR MaLR 274 284 -45 4 1723 1302 94 6 6 chr5 149233564 149233745 -3303514 + B2_Mm2 SINE B2 1 181 -14 4 1723 767 93 0 8 chr5 149233745 149233864 -3303395 + (GAAA)n Simple_repeat Simple_repeat 1 118 0 4 1723 286 125 0 127 chr5 149233864 149233905 -3303354 + ORR1A4 LTR MaLR 285 320 -9 4 1723 294 288 107 24 chr5 149234030 149234252 -3303007 - L1MB2 LINE L1 -111 6069 5830 4 1723 801 92 0 0 chr5 149235033 149235157 -3302102 + B1_Mur4 SINE Alu 2 125 -24 4 1723 304 316 149 13 chr5 149235264 149235418 -3301841 + MLT1I LTR MaLR 97 271 -140 4 1723 669 76 0 0 chr5 149235437 149235529 -3301730 + (TCC)n Simple_repeat Simple_repeat 2 93 0 4 1723 469 270 60 46 chr5 149235616 149235793 -3301466 + B3A SINE B2 29 204 -12 4 1723 306 164 0 0 chr5 149235801 149235856 -3301403 + (TG)n Simple_repeat Simple_repeat 2 56 0 4 1723 195 184 0 0 chr5 149235979 149236017 -3301242 + CT-rich Low_complexity Low_complexity 1 38 0 4 1723 225 65 0 0 chr5 149236127 149236158 -3301101 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4 1723 1032 223 48 0 chr5 149237749 149237955 -3299304 - B3 SINE B2 0 216 1 4 1723 905 230 33 5 chr5 149238521 149238731 -3298528 - B3 SINE B2 0 216 1 4 1723 512 68 14 0 chr5 149238738 149238811 -3298448 + (TCTG)n Simple_repeat Simple_repeat 3 76 0 4 1723 1968 149 14 65 chr5 149238838 149239255 -3298004 + RMER10B LTR ERVL 3 398 0 4 1723 562 144 9 11 chr5 149239265 149239367 -3297892 - B1_Mur1 SINE Alu -15 134 28 4 1723 781 144 72 0 chr5 149239602 149239727 -3297532 + B1_Mur4 SINE Alu 1 134 -16 4 1723 687 119 146 31 chr5 149240067 149240197 -3297062 - B1_Mus1 SINE Alu -1 147 3 4 1723 315 0 0 0 chr5 149240803 149240838 -3296421 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 4 1723 1005 215 67 19 chr5 149241733 149241942 -3295317 + URR1B DNA MER1_type 7 225 0 4 1723 302 301 133 20 chr5 149242182 149242385 -3294874 - MLT1B LTR MaLR -84 306 81 4 1723 1349 94 0 5 chr5 149242396 149242772 -3294487 + (TAGA)n Simple_repeat Simple_repeat 1 374 0 4 1723 1402 225 200 26 chr5 149242775 149243046 -3294213 + Lx8 LINE L1 6177 6500 -973 4 1723 513 0 0 0 chr5 149243046 149243103 -3294156 + (TG)n Simple_repeat Simple_repeat 2 58 0 4 1723 1402 225 200 26 chr5 149243103 149243287 -3293972 + Lx8 LINE L1 6501 6711 -762 4 1723 541 288 0 0 chr5 149243288 149243406 -3293853 + RSINE1 SINE B4 23 140 -25 4 1723 202 118 29 0 chr5 149244203 149244237 -3293022 + (CCCCAA)n Simple_repeat Simple_repeat 2 36 0 4 1723 1923 174 65 25 chr5 149244300 149244702 -3292557 - MTD LTR MaLR 0 419 2 4 1723 1157 48 7 33 chr5 149244958 149245109 -3292150 - B1_Mus1 SINE Alu 0 148 2 4 1723 296 256 64 0 chr5 149245166 149245244 -3292015 - LTR33 LTR ERVL -91 424 342 4 1723 321 260 70 39 chr5 149245253 149245381 -3291878 - MER45A DNA Tip100 -7 171 40 4 1723 203 328 117 8 chr5 149245617 149245737 -3291522 - L2 LINE L2 -562 2857 2725 4 1723 617 207 69 28 chr5 149246165 149246309 -3290950 + RMER19B LTR ERVK 1 150 -752 4 1723 1342 142 18 35 chr5 149246308 149246535 -3290724 + RMER19B LTR ERVK 680 902 0 4 1723 1459 262 50 12 chr5 149246554 149247042 -3290217 - Lx7 LINE L1 -1716 5980 5472 4 1723 251 246 72 0 chr5 149247730 149247799 -3289460 + MER53 DNA hAT 97 170 -23 4 1723 210 246 0 0 chr5 149248323 149248384 -3288875 + CT-rich Low_complexity Low_complexity 2 62 0 4 1723 342 214 184 0 chr5 149248779 149248877 -3288382 + L1MD3 LINE L1 7572 7687 -308 4 1723 270 81 0 0 chr5 149249197 149249234 -3288025 + (GGGA)n Simple_repeat Simple_repeat 1 37 0 4 1723 615 158 0 38 chr5 149249303 149249408 -3287851 + B1_Mur3 SINE Alu 3 103 -46 4 1723 1162 68 0 7 chr5 149249408 149249557 -3287702 + B1_Mus1 SINE Alu 1 148 0 4 1723 283 294 75 97 chr5 149249576 149249976 -3287283 - L1M5 LINE L1 -3227 2919 2509 4 1723 597 246 54 140 chr5 149250010 149250214 -3287045 + L1MB5 LINE L1 5687 5887 -287 4 1723 961 75 13 40 chr5 149250214 149250366 -3286893 + B1_Mus1 SINE Alu 1 148 0 4 1723 597 246 54 140 chr5 149250366 149250496 -3286763 + L1MB5 LINE L1 5888 5992 -182 4 1723 843 202 20 69 chr5 149250499 149250701 -3286558 + B3A SINE B2 7 198 0 4 1723 581 308 94 23 chr5 149250791 149251047 -3286212 + B4 SINE B4 1 274 -18 4 1723 363 236 41 106 chr5 149251644 149251767 -3285492 + MT2B LTR ERVL 143 257 -344 4 1723 781 156 59 7 chr5 149251668 149251783 -3285476 + B1_Mus1 SINE Alu 6 119 -29 4 1723 208 0 62 0 chr5 149251783 149251815 -3285444 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 4 1723 781 156 59 7 chr5 149251815 149251835 -3285424 + B1_Mus1 SINE Alu 120 147 -1 4 1723 999 213 23 36 chr5 149251871 149252090 -3285169 + B3 SINE B2 1 216 0 4 1723 254 308 138 85 chr5 149252165 149252541 -3284718 + L1MD LINE L1 4014 4409 -1737 4 1723 1391 95 11 0 chr5 149252657 149252847 -3284412 + B2_Mm1t SINE B2 1 192 -1 4 1723 849 107 120 0 chr5 149253015 149253165 -3284094 + B2_Mm2 SINE B2 28 195 0 4 1723 1201 55 7 0 chr5 149253229 149253375 -3283884 - B1_Mus2 SINE Alu 0 147 1 4 1723 509 192 144 15 chr5 149253477 149253609 -3283650 + B1_Mur1 SINE Alu 1 149 0 4 1723 264 77 0 0 chr5 149253625 149253664 -3283595 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 4 1723 446 335 72 53 chr5 149253671 149254030 -3283229 + L1M5 LINE L1 4755 5120 -1026 4 1723 1426 183 127 67 chr5 149254247 149254663 -3282596 - RMER10A LTR ERVL 0 442 2 5 1723 967 297 96 30 chr5 149254701 149255097 -3282162 + Lx9 LINE L1 7041 7462 -182 5 1723 984 202 82 5 chr5 149256658 149256852 -3280407 - B3 SINE B2 -4 212 4 5 1723 1838 169 50 11 chr5 149257070 149257430 -3279829 - ORR1D1 LTR MaLR 0 374 1 5 1723 215 171 0 0 chr5 149257664 149257699 -3279560 + PB1D9 SINE Alu 12 46 -74 5 1723 328 137 25 41 chr5 149257938 149258060 -3279199 + T-rich Low_complexity Low_complexity 1 120 0 5 1723 387 132 32 108 chr5 149258062 149258155 -3279104 - B1_Mur4 SINE Alu 0 150 65 5 1723 566 310 129 63 chr5 149258423 149258611 -3278648 + MLT1C LTR MaLR 1 188 -279 5 1723 2079 175 19 3 chr5 149258611 149258983 -3278276 + RLTR14 LTR ERV1 5 382 0 5 1723 566 310 129 63 chr5 149258983 149259221 -3278038 + MLT1C LTR MaLR 189 455 -12 5 1723 291 238 35 35 chr5 149260248 149260335 -3276924 - RLTR28 LTR ERVL -14 510 424 5 1723 2324 169 50 13 chr5 149260465 149260920 -3276339 + RLTR11A LTR ERVK 1 472 -56 5 1723 385 107 53 0 chr5 149261558 149261633 -3275626 + CT-rich Low_complexity Low_complexity 2 80 0 5 1723 964 94 71 21 chr5 149261649 149261790 -3275469 - B1_Mus1 SINE Alu 0 148 1 5 1723 22 0 0 0 chr5 149262867 149262889 -3274370 + AT_rich Low_complexity Low_complexity 1 22 0 5 1723 1270 34 0 0 chr5 149262920 149263066 -3274193 + B1_Mus1 SINE Alu 1 146 -2 5 1723 472 246 91 15 chr5 149263084 149263216 -3274043 - B3A SINE B2 -5 193 52 5 1723 793 126 136 102 chr5 149263734 149263911 -3273348 - B2_Mm2 SINE B2 -11 184 2 5 1723 380 228 200 9 chr5 149264057 149264225 -3273034 - L1MB7 LINE L1 -141 6043 5841 5 1723 261 238 62 131 chr5 149265178 149265235 -3272024 + Charlie8 DNA MER1_type 662 716 -1712 5 1723 309 118 0 0 chr5 149265235 149265286 -3271973 + (CA)n Simple_repeat Simple_repeat 1 51 0 5 1723 261 238 62 131 chr5 149265286 149265373 -3271886 + Charlie8 DNA MER1_type 717 796 -1632 5 1723 1170 47 0 39 chr5 149266351 149266493 -3270766 + B1_Mus1 SINE Alu 1 138 -10 5 1723 234 0 0 0 chr5 149266493 149266519 -3270740 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1723 1170 47 0 39 chr5 149266519 149266530 -3270729 + B1_Mus1 SINE Alu 139 148 0 5 1723 3485 115 18 93 chr5 149266817 149267522 -3269737 - RMER6A LTR ERVK -2 754 57 5 1723 297 0 0 0 chr5 149267794 149267827 -3269432 + (CA)n Simple_repeat Simple_repeat 1 33 0 5 1723 356 254 121 21 chr5 149267914 149268055 -3269204 + MER5A1 DNA MER1_type 5 159 -7 5 1723 387 0 0 0 chr5 149268290 149268333 -3268926 + (CA)n Simple_repeat Simple_repeat 2 44 0 5 1723 265 273 18 0 chr5 149268363 149268418 -3268841 + B2_Mm2 SINE B2 2 57 -138 5 1723 450 283 20 0 chr5 149269010 149269109 -3268150 + B3 SINE B2 75 175 -41 5 1723 925 81 0 0 chr5 149269109 149269233 -3268026 + ORR1A2 LTR MaLR 1 124 -203 5 1723 11205 113 107 3 chr5 149269246 149271024 -3266235 + ORR1A2-int LTR MaLR 1 1963 0 5 1723 2436 79 3 0 chr5 149271024 149271342 -3265917 + ORR1A2 LTR MaLR 1 319 -8 5 1723 2419 47 3 0 chr5 149271349 149271649 -3265610 - MTB LTR MaLR -99 301 1 5 1723 791 117 148 0 chr5 149271955 149272083 -3265176 - B1_Mus1 SINE Alu -1 147 1 5 1723 1221 204 133 9 chr5 149272393 149272709 -3264550 - ORR1E LTR MaLR 0 359 5 5 1723 2041 114 6 42 chr5 149272749 149273024 -3264235 + RLTR28 LTR ERVL 1 267 -257 5 1723 2057 98 21 59 chr5 149273024 149273362 -3263897 + ORR1A4 LTR MaLR 5 329 0 5 1723 2041 114 6 42 chr5 149273362 149273417 -3263842 + RLTR28 LTR ERVL 268 319 -205 5 1723 945 139 29 0 chr5 149274000 149274137 -3263122 + B1_Mur4 SINE Alu 2 142 -8 5 1723 650 306 149 14 chr5 149274222 149274504 -3262755 - MER2 DNA MER2_type 0 345 26 5 1723 243 203 17 0 chr5 149274533 149274592 -3262667 - L1MB7 LINE L1 -102 6082 6023 5 1723 1351 108 0 20 chr5 149274927 149275126 -3262133 + B2_Mm2 SINE B2 1 195 0 5 1723 262 262 174 21 chr5 149275374 149275518 -3261741 - L1MD LINE L1 -359 5883 5718 5 1723 1266 27 0 0 chr5 149276969 149277116 -3260143 + B1_Mm SINE Alu 1 147 0 5 1723 337 239 82 101 chr5 149277836 149278136 -3259123 + RLTR15 LTR ERVK 43 310 -49 5 1723 928 129 7 0 chr5 149279083 149279223 -3258036 - B1_Mur3 SINE Alu -2 147 7 5 1723 372 371 89 58 chr5 149279857 149280062 -3257197 + MLT1L LTR MaLR 191 412 -198 5 1723 243 0 0 0 chr5 149280062 149280089 -3257170 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1723 372 371 89 58 chr5 149280089 149280175 -3257084 + MLT1L LTR MaLR 413 491 -119 5 1723 689 273 77 84 chr5 149280308 149280661 -3256598 - MLT1H2-int LTR MaLR -105 1384 1042 5 1723 785 335 132 57 chr5 149280637 149281163 -3256096 - MLT1H2-int LTR MaLR -477 932 356 5 1723 1447 75 16 0 chr5 149281163 149281349 -3255910 - B2_Mm2 SINE B2 -6 189 1 5 1723 785 335 132 57 chr5 149281349 149281578 -3255681 - MLT1H2-int LTR MaLR -1054 355 120 5 1723 619 265 7 33 chr5 149281644 149281796 -3255463 - RSINE1 SINE B4 -14 151 4 5 1723 227 274 0 0 chr5 149281855 149281906 -3255353 - MLT1H2 LTR MaLR -10 479 429 5 1723 324 0 0 0 chr5 149281944 149281980 -3255279 + (CA)n Simple_repeat Simple_repeat 2 37 0 5 1723 889 180 7 0 chr5 149281984 149282123 -3255136 + B1_Mur1 SINE Alu 8 147 -2 5 1723 758 194 0 30 chr5 149282132 149282265 -3254994 + B3 SINE B2 1 129 -87 5 1723 1165 55 7 0 chr5 149282319 149282465 -3254794 + B1_Mus1 SINE Alu 1 147 -1 5 1723 25 0 0 0 chr5 149282472 149282497 -3254762 + AT_rich Low_complexity Low_complexity 1 25 0 5 1723 969 121 0 0 chr5 149282842 149283016 -3254243 + (TG)n Simple_repeat Simple_repeat 2 175 0 5 1723 1014 59 0 15 chr5 149283242 149283379 -3253880 + B2_Mm2 SINE B2 2 136 -59 5 1723 623 252 98 0 chr5 149283378 149283521 -3253738 + RSINE1 SINE B4 9 165 0 5 1723 277 216 168 47 chr5 149283559 149283666 -3253593 + RMER1B Other Other 34 153 -913 5 1723 3180 250 86 22 chr5 149283785 149284867 -3252392 + RMER1C Other Other 163 1340 -2 5 1723 1133 93 0 0 chr5 149284937 149285087 -3252172 + B2_Mm2 SINE B2 5 154 -41 5 1723 378 56 358 27 chr5 149285138 149285247 -3252012 + B2_Mm2 SINE B2 47 191 -4 5 1723 760 274 68 59 chr5 149285248 149285585 -3251674 + ORR1E LTR MaLR 18 357 -2 5 1723 2083 229 23 62 chr5 149286535 149286625 -3250634 - RLTR20A LTR ERVK 0 541 447 5 1723 485 14 40 13 chr5 149286625 149286700 -3250559 + (CA)n Simple_repeat Simple_repeat 2 78 0 5 1723 2083 229 23 62 chr5 149286700 149287172 -3250087 - RLTR20A LTR ERVK -95 446 1 5 1723 303 49 0 0 chr5 149287850 149287891 -3249368 + (CAA)n Simple_repeat Simple_repeat 2 42 0 5 1723 212 0 36 0 chr5 149288003 149288031 -3249228 + (TG)n Simple_repeat Simple_repeat 1 29 0 5 1723 846 204 151 81 chr5 149288082 149288354 -3248905 - B4 SINE B4 -1 291 1 5 1723 406 254 82 6 chr5 149288368 149288489 -3248770 - B1F1 SINE Alu -11 138 15 5 1723 256 321 83 28 chr5 149288512 149288617 -3248642 + ORR1E LTR MaLR 1 111 -248 5 1723 1263 193 107 4 chr5 149288617 149288793 -3248466 - MTD LTR MaLR 0 419 225 5 1723 2405 74 55 0 chr5 149288793 149289103 -3248156 + ORR1A2 LTR MaLR 1 327 0 5 1723 1263 180 538 9 chr5 149289103 149289248 -3248011 - MTD LTR MaLR -195 224 4 5 1723 353 188 35 23 chr5 149289508 149289595 -3247664 + B2_Mm2 SINE B2 1 88 -107 5 1723 670 204 7 42 chr5 149289657 149289800 -3247459 + B1_Mur2 SINE Alu 3 140 -9 5 1723 1396 122 30 45 chr5 149289802 149290069 -3247190 + RMER10B LTR ERVL 3 265 -133 5 1723 935 161 58 68 chr5 149290089 149290295 -3246964 + RMER10B LTR ERVL 195 398 0 5 1724 3731 48 27 25 chr5 149291180 149291654 -3245605 - MT2C_Mm LTR ERVL 0 475 1 5 1724 438 196 8 43 chr5 149292975 149293092 -3244167 + PB1D10 SINE Alu 5 117 0 5 1724 698 221 29 0 chr5 149293106 149293246 -3244013 + B1_Mur1 SINE Alu 5 148 -1 5 1724 212 154 51 0 chr5 149293685 149293724 -3243535 + L2 LINE L2 1992 2032 -1387 5 1724 560 314 5 63 chr5 149293801 149294008 -3243251 + MTD LTR MaLR 17 211 -208 5 1724 889 170 7 0 chr5 149294008 149294155 -3243104 + B1_Mur4 SINE Alu 1 148 -2 5 1724 285 29 0 0 chr5 149294162 149294196 -3243063 + (GA)n Simple_repeat Simple_repeat 2 35 0 5 1724 645 112 41 0 chr5 149294196 149294286 -3242973 + B2_Mm2 SINE B2 4 97 -98 5 1724 2390 82 3 0 chr5 149294286 149294603 -3242656 + ORR1A2 LTR MaLR 1 318 -9 5 1724 633 191 27 41 chr5 149294569 149294716 -3242543 + B2_Mm2 SINE B2 51 195 0 5 1724 738 184 207 0 chr5 149294750 149294924 -3242335 + MTD LTR MaLR 197 406 -13 5 1724 286 360 168 15 chr5 149295304 149295637 -3241622 + L2 LINE L2 2694 3077 -342 5 1724 432 0 0 0 chr5 149295927 149295975 -3241284 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1724 468 106 0 0 chr5 149296140 149296225 -3241034 + (TG)n Simple_repeat Simple_repeat 1 85 0 5 1724 210 269 18 162 chr5 149296269 149296380 -3240879 - PB1D10 SINE Alu -22 95 1 5 1724 332 340 67 95 chr5 149296380 149296464 -3240795 - B4A SINE B4 -213 79 1 5 1724 224 300 17 0 chr5 149296636 149296696 -3240563 + (CA)n Simple_repeat Simple_repeat 2 62 0 5 1724 992 171 118 10 chr5 149297057 149297252 -3240007 - B3 SINE B2 0 216 1 5 1724 306 217 56 28 chr5 149297615 149297686 -3239573 - ID SINE ID -144 80 8 5 1724 208 121 0 0 chr5 149298519 149298552 -3238707 + (TTGG)n Simple_repeat Simple_repeat 3 35 0 5 1724 871 168 7 0 chr5 149298552 149298695 -3238564 - B1_Mur4 SINE Alu -5 145 2 5 1724 336 127 0 0 chr5 149299392 149299447 -3237812 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1724 313 234 0 15 chr5 149299458 149299523 -3237736 - B4A SINE B4 -14 278 215 5 1724 1052 65 58 0 chr5 149299543 149299682 -3237577 - B1_Mm SINE Alu 0 147 1 5 1724 388 217 0 0 chr5 149299693 149299762 -3237497 - B4A SINE B4 -60 232 164 5 1724 228 277 0 0 chr5 149299729 149299772 -3237487 + LTR80A LTR ERVL 231 273 -310 5 1724 1973 135 130 32 chr5 149299772 149300148 -3237111 - MTC LTR MaLR 0 421 9 5 1724 689 259 14 0 chr5 149300144 149300291 -3236968 - B4A SINE B4 -141 151 3 5 1724 204 208 38 0 chr5 149300293 149300346 -3236913 + (TA)n Simple_repeat Simple_repeat 2 56 0 5 1724 777 290 63 42 chr5 149300351 149300437 -3236822 - L1_Rod LINE L1 -58 5789 5701 5 1724 243 0 0 0 chr5 149300437 149300464 -3236795 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 5 1724 777 290 63 42 chr5 149300464 149300708 -3236551 - L1_Rod LINE L1 -147 5700 5452 5 1724 1065 245 75 69 chr5 149300973 149301319 -3235940 + ORR1E LTR MaLR 1 348 -11 6 1724 958 274 161 22 chr5 149301332 149301735 -3235524 + MLT1C LTR MaLR 1 459 -8 6 1724 198 0 0 0 chr5 149302289 149302311 -3234948 + (A)n Simple_repeat Simple_repeat 1 22 0 6 1724 1201 41 0 7 chr5 149303152 149303298 -3233961 - B1_Mus2 SINE Alu -1 146 2 6 1724 534 262 124 6 chr5 149303633 149303802 -3233457 - MER2 DNA MER2_type -8 337 149 6 1724 395 258 49 54 chr5 149303817 149304022 -3233237 - RLTR15 LTR ERVK -128 231 28 6 1724 1235 127 103 34 chr5 149304222 149304518 -3232741 - RMER16 LTR ERVK -5 528 1 6 1724 399 274 154 48 chr5 149305669 149305886 -3231373 + L1MA4 LINE L1 5720 5957 -355 6 1724 362 295 158 103 chr5 149307281 149307466 -3229793 + HAL1b LINE L1 875 1080 -929 6 1724 891 166 14 0 chr5 149307466 149307611 -3229648 + B1_Mus2 SINE Alu 1 147 0 6 1724 362 295 158 103 chr5 149307611 149307678 -3229581 + HAL1b LINE L1 1081 1141 -868 6 1724 351 274 69 0 chr5 149307819 149307921 -3229338 + PB1D7 SINE Alu 1 109 -11 6 1724 1278 85 22 6 chr5 149308048 149308226 -3229033 + B2_Mm2 SINE B2 13 193 -2 6 1724 1797 159 51 63 chr5 149308188 149308538 -3228721 - RLTR19C LTR ERVK -20 486 141 6 1724 310 284 12 12 chr5 149308630 149308712 -3228547 + ID4_ SINE ID 2 83 0 6 1724 198 0 0 0 chr5 149308966 149308988 -3228271 + (GGA)n Simple_repeat Simple_repeat 3 24 0 6 1724 414 287 0 50 chr5 149309094 149309210 -3228049 - MLT2C1 LTR ERVL 0 563 454 6 1724 896 174 167 96 chr5 149309210 149309450 -3227809 + RMER4B LTR ERVK 1 255 -330 6 1724 285 109 0 0 chr5 149309450 149309496 -3227763 + (CTG)n Simple_repeat Simple_repeat 1 46 0 6 1724 896 221 124 124 chr5 149309496 149309722 -3227537 + RMER4B LTR ERVK 254 457 -9 6 1724 370 291 72 48 chr5 149309729 149309895 -3227364 - MLT2C1 LTR ERVL -167 389 220 6 1724 1226 205 57 50 chr5 149310172 149310432 -3226827 - MTE2b LTR MaLR -38 341 90 6 1724 1407 185 189 9 chr5 149310432 149310632 -3226627 + ORR1D1 LTR MaLR 1 204 -170 6 1724 183 80 0 0 chr5 149310632 149310657 -3226602 + (CCTG)n Simple_repeat Simple_repeat 3 27 0 6 1724 1407 185 189 9 chr5 149310657 149310773 -3226486 + ORR1D1 LTR MaLR 205 373 -1 6 1724 1226 205 57 50 chr5 149310773 149310794 -3226465 - MTE2b LTR MaLR -290 89 59 6 1724 728 200 69 29 chr5 149311555 149311730 -3225529 + ID_B1 SINE B4 10 191 -33 6 1724 453 279 0 0 chr5 149312777 149312855 -3224404 + RSINE1 SINE B4 2 79 -86 6 1724 2278 153 19 0 chr5 149312855 149313228 -3224031 + RLTR14 LTR ERV1 3 382 0 6 1724 453 279 0 0 chr5 149313228 149313253 -3224006 + RSINE1 SINE B4 80 104 -61 6 1724 723 199 42 7 chr5 149313530 149313672 -3223587 - B1_Mur1 SINE Alu -2 147 1 6 1724 547 78 48 0 chr5 149314856 149314959 -3222300 + (TC)n Simple_repeat Simple_repeat 2 109 0 6 1724 1369 79 17 0 chr5 149315742 149315919 -3221340 + B2_Mm2 SINE B2 2 181 -14 6 1724 23 33 0 0 chr5 149316688 149316718 -3220541 + AT_rich Low_complexity Low_complexity 1 30 0 6 1724 313 337 0 20 chr5 149318970 149319070 -3218189 + PB1 SINE Alu 21 118 -9 6 1724 414 200 82 67 chr5 149319242 149319376 -3217883 + RSINE1 SINE B4 5 140 -25 6 1724 237 0 43 65 chr5 149319437 149319483 -3217776 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 6 1724 1189 61 0 7 chr5 149322504 149322652 -3214607 + B1_Mus1 SINE Alu 2 148 0 6 1724 352 284 0 0 chr5 149322815 149322896 -3214363 + ID4_ SINE ID 1 81 -2 6 1724 365 217 618 6 chr5 149323985 149324159 -3213100 + B4A SINE B4 2 282 -10 6 1724 180 77 0 0 chr5 149324205 149324231 -3213028 + (GA)n Simple_repeat Simple_repeat 2 27 0 6 1724 617 275 12 75 chr5 149324595 149324768 -3212491 + B3A SINE B2 1 162 -36 6 1724 1117 63 28 0 chr5 149324859 149325002 -3212257 + B1_Mus1 SINE Alu 2 148 0 6 1724 236 189 36 36 chr5 149325943 149325998 -3211261 + L1MC1 LINE L1 6248 6302 -31 6 1724 229 221 208 10 chr5 149327494 149327590 -3209669 + L1MD3 LINE L1 7875 7989 -6 6 1724 309 250 78 69 chr5 149327594 149327710 -3209549 + PB1D10 SINE Alu 1 117 0 6 1724 45 34 0 0 chr5 149327826 149327885 -3209374 + AT_rich Low_complexity Low_complexity 1 59 0 6 1724 443 263 31 84 chr5 149328214 149328405 -3208854 - B3A SINE B2 -17 181 1 6 1724 203 279 157 34 chr5 149328731 149328820 -3208439 + L2b LINE L2 2971 3070 -305 6 1724 871 153 282 6 chr5 149329340 149329517 -3207742 + URR1A DNA MER1_type 1 226 0 6 1724 310 215 89 0 chr5 149330011 149330090 -3207169 - B4 SINE B4 -20 272 187 6 1724 663 48 0 0 chr5 149331572 149331655 -3205604 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 6 1724 1916 171 119 31 chr5 149333010 149333118 -3204141 + MTC LTR MaLR 1 104 -317 6 1724 1010 140 84 0 chr5 149333118 149333297 -3203962 - B2_Mm2 SINE B2 0 195 2 6 1724 1916 171 119 31 chr5 149333297 149333575 -3203684 + MTC LTR MaLR 105 421 0 6 1724 608 164 18 0 chr5 149334027 149334137 -3203122 - PB1D9 SINE Alu 0 120 9 6 1724 731 153 69 0 chr5 149336267 149336398 -3200861 + MTC LTR MaLR 1 140 -281 6 1724 933 199 109 0 chr5 149337673 149337874 -3199385 - URR1A DNA MER1_type -3 223 1 6 1724 496 276 48 12 chr5 149339081 149339246 -3198013 - ID_B1 SINE B4 -52 172 2 6 1724 898 140 7 27 chr5 149340871 149341018 -3196241 + B1_Mus1 SINE Alu 5 148 0 6 1724 297 0 0 0 chr5 149341088 149341121 -3196138 + (T)n Simple_repeat Simple_repeat 1 33 0 6 1724 249 203 0 0 chr5 149341305 149341364 -3195895 + T-rich Low_complexity Low_complexity 1 59 0 6 1724 1186 68 0 0 chr5 149341365 149341513 -3195746 - B1_Mus1 SINE Alu 0 148 1 6 1724 444 270 27 75 chr5 149342766 149342954 -3194305 + B4A SINE B4 1 179 -113 6 1724 1297 79 40 0 chr5 149344301 149344478 -3192781 + B2_Mm1a SINE B2 2 185 -8 6 1724 21 36 0 0 chr5 149345589 149345617 -3191642 + AT_rich Low_complexity Low_complexity 1 28 0 6 1724 883 93 17 0 chr5 149347096 149347214 -3190045 - PB1D9 SINE Alu 0 120 1 6 1724 1126 62 14 0 chr5 149348246 149348391 -3188868 + B1_Mus1 SINE Alu 2 148 0 6 1724 297 322 129 48 chr5 149349291 149349500 -3187759 + MIRb SINE MIR 32 257 -11 6 1724 288 77 0 0 chr5 149349712 149349751 -3187508 + (CA)n Simple_repeat Simple_repeat 2 40 0 6 1724 696 239 16 145 chr5 149349864 149350050 -3187209 + B3A SINE B2 32 197 -1 6 1724 227 273 18 0 chr5 149350144 149350199 -3187060 + B4 SINE B4 81 136 -156 6 1724 459 0 0 0 chr5 149350315 149350366 -3186893 + (CA)n Simple_repeat Simple_repeat 2 52 0 6 1724 729 273 89 22 chr5 149350603 149350873 -3186386 + B4A SINE B4 4 291 -1 6 1724 287 242 250 0 chr5 149350945 149351073 -3186186 - MER3 DNA MER1_type 0 209 50 6 1724 187 252 44 132 chr5 149351086 149351200 -3186059 - L2c LINE L2 -16 3371 3268 6 1724 257 220 34 0 chr5 149352816 149352875 -3184384 + L1MEg LINE L1 1035 1095 -5147 6 1724 254 259 82 0 chr5 149352982 149353067 -3184192 + PB1D10 SINE Alu 19 110 -7 6 1724 233 29 29 0 chr5 149353518 149353552 -3183707 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6 1724 1112 86 0 0 chr5 149353554 149353694 -3183565 - B1_Mus1 SINE Alu -7 141 2 6 1724 296 207 12 186 chr5 149354528 149354700 -3182559 + L1MEg LINE L1 2819 2960 -3186 6 1724 258 32 0 0 chr5 149355082 149355113 -3182146 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 6 1724 371 319 102 6 chr5 149355140 149355307 -3181952 + L1MEg LINE L1 3539 3721 -2425 6 1724 882 196 52 16 chr5 149355356 149355548 -3181711 + B3 SINE B2 1 199 -17 6 1724 306 233 0 0 chr5 149355594 149355654 -3181605 + B4A SINE B4 86 145 -147 6 1724 384 173 43 111 chr5 149355602 149355719 -3181540 + PB1D10 SINE Alu 9 117 0 6 1724 256 239 118 9 chr5 149355961 149356071 -3181188 + MLT1A1 LTR MaLR 1 122 -286 6 1724 1342 74 23 0 chr5 149356636 149356812 -3180447 + B2_Mm2 SINE B2 1 180 -15 6 1724 377 86 325 0 chr5 149356842 149356946 -3180313 + B2_Mm2 SINE B2 46 188 -7 6 1724 212 275 87 0 chr5 149357840 149357909 -3179350 - PB1D9 SINE Alu -6 114 40 6 1724 265 278 71 65 chr5 149357930 149358084 -3179175 - Charlie7 DNA MER1_type -379 2233 2079 6 1724 210 37 0 0 chr5 149358206 149358233 -3179026 + (T)n Simple_repeat Simple_repeat 1 27 0 6 1724 225 276 53 0 chr5 149358256 149358332 -3178927 - Charlie7 DNA MER1_type -764 1848 1769 6 1724 369 222 91 0 chr5 149358799 149358898 -3178361 + PB1D10 SINE Alu 10 117 0 6 1724 842 158 7 0 chr5 149360058 149360197 -3177062 - B1_Mur1 SINE Alu -1 148 9 6 1724 234 150 0 0 chr5 149361400 149361440 -3175819 + (TG)n Simple_repeat Simple_repeat 1 40 0 6 1724 183 156 0 0 chr5 149363268 149363300 -3173959 + A-rich Low_complexity Low_complexity 1 32 0 6 1724 195 114 0 0 chr5 149363686 149363721 -3173538 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 6 1724 294 95 0 0 chr5 149364090 149364132 -3173127 + (CCGAG)n Simple_repeat Simple_repeat 5 46 0 6 1724 257 125 62 0 chr5 149366799 149366847 -3170412 + L1MB7 LINE L1 6081 6131 -53 6 1724 380 20 0 20 chr5 149366880 149366930 -3170329 + (TG)n Simple_repeat Simple_repeat 1 49 0 6 1724 608 284 7 0 chr5 149366932 149367080 -3170179 - B3A SINE B2 -48 150 2 6 1724 211 24 122 0 chr5 149367102 149367143 -3170116 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 6 1724 940 106 28 0 chr5 149367152 149367294 -3169965 - B1_Mur4 SINE Alu 0 150 5 6 1724 616 256 104 62 chr5 149367304 149367556 -3169703 - L1MB3 LINE L1 -1 6182 5909 6 1724 1214 54 0 0 chr5 149367556 149367703 -3169556 - B1_Mm SINE Alu 0 147 1 6 1724 616 256 104 62 chr5 149367703 149367834 -3169425 - L1MB3 LINE L1 -275 5908 5783 6 1724 32 67 0 0 chr5 149367889 149367949 -3169310 + AT_rich Low_complexity Low_complexity 1 60 0 6 1724 322 273 128 18 chr5 149368660 149368808 -3168451 + B4A SINE B4 69 234 -58 6 1724 287 330 19 9 chr5 149368808 149368915 -3168344 + B4A SINE B4 2 109 -183 6 1724 1195 179 42 0 chr5 149368986 149369198 -3168061 - URR1B DNA MER1_type 0 225 5 6 1724 342 317 0 43 chr5 149369316 149369504 -3167755 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1724 313 239 0 27 chr5 149369523 149369708 -3167551 + (CA)n Simple_repeat Simple_repeat 1 180 0 7 1724 21 0 0 0 chr5 149369863 149369884 -3167375 + AT_rich Low_complexity Low_complexity 1 21 0 7 1724 228 135 0 0 chr5 149371094 149371131 -3166128 + (TTC)n Simple_repeat Simple_repeat 2 38 0 7 1724 887 101 78 0 chr5 149371162 149371291 -3165968 - B1_Mus1 SINE Alu -9 139 1 7 1724 249 83 0 0 chr5 149372483 149372519 -3164740 + (CAGA)n Simple_repeat Simple_repeat 2 37 0 7 1724 560 216 234 23 chr5 149372691 149372866 -3164393 + B3 SINE B2 2 213 -3 7 1724 640 55 0 21 chr5 149372890 149372983 -3164276 + B1_Mus1 SINE Alu 2 92 -56 7 1724 419 362 33 77 chr5 149373714 149374013 -3163246 + MER2 DNA MER2_type 1 286 -59 7 1724 495 151 0 0 chr5 149374118 149374211 -3163048 + (TG)n Simple_repeat Simple_repeat 2 94 0 7 1724 224 289 141 35 chr5 149374480 149374651 -3162608 + MIR SINE MIR 28 220 -48 7 1724 472 56 28 0 chr5 149374867 149374939 -3162320 + (TCCC)n Simple_repeat Simple_repeat 3 76 0 7 1724 342 225 76 127 chr5 149375551 149375667 -3161592 - B4 SINE B4 0 292 184 7 1724 572 0 15 0 chr5 149375667 149375735 -3161524 + (TC)n Simple_repeat Simple_repeat 2 70 0 7 1724 342 225 76 127 chr5 149375735 149375776 -3161483 - B4 SINE B4 -109 183 143 7 1724 544 321 16 42 chr5 149375881 149376073 -3161186 + Lx8 LINE L1 7141 7327 -146 7 1724 557 218 0 11 chr5 149376129 149376310 -3160949 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1724 297 0 0 0 chr5 149376398 149376431 -3160828 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 7 1724 213 108 0 0 chr5 149377106 149377143 -3160116 + (A)n Simple_repeat Simple_repeat 1 37 0 7 1724 251 164 25 76 chr5 149377280 149377359 -3159900 + G-rich Low_complexity Low_complexity 4 78 0 7 1724 427 255 99 41 chr5 149377651 149377823 -3159436 - B3A SINE B2 -16 182 1 7 1724 1143 107 0 0 chr5 149377835 149378004 -3159255 + (TTC)n Simple_repeat Simple_repeat 2 170 0 7 1724 279 0 0 0 chr5 149378004 149378035 -3159224 + (TTA)n Simple_repeat Simple_repeat 1 31 0 7 1724 383 229 6 22 chr5 149378035 149378187 -3159072 - B3 SINE B2 -1 215 1 7 1724 555 29 0 0 chr5 149378457 149378526 -3158733 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 7 1724 374 57 0 0 chr5 149379006 149379059 -3158200 + URR1B DNA MER1_type 173 225 0 7 1724 3086 121 38 18 chr5 149379326 149379875 -3157384 + RMER15 LTR ERVL 9 568 -7 7 1724 252 0 0 0 chr5 149379875 149379903 -3157356 + (TG)n Simple_repeat Simple_repeat 1 28 0 7 1724 369 0 0 0 chr5 149379903 149379943 -3157316 + (GA)n Simple_repeat Simple_repeat 1 41 0 7 1724 468 265 29 7 chr5 149380068 149380205 -3157054 + B1F SINE Alu 1 140 -9 7 1724 243 0 0 0 chr5 149381010 149381037 -3156222 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1724 504 0 0 0 chr5 149381481 149381537 -3155722 + (TG)n Simple_repeat Simple_repeat 1 56 0 7 1724 640 153 218 0 chr5 149381537 149381661 -3155598 - B3 SINE B2 -63 153 3 7 1724 24 67 0 0 chr5 149381661 149381706 -3155553 + AT_rich Low_complexity Low_complexity 1 45 0 7 1724 922 155 113 41 chr5 149382605 149382800 -3154459 + B3 SINE B2 2 210 -6 7 1724 1565 42 5 5 chr5 149383900 149384089 -3153170 - B2_Mm2 SINE B2 -2 193 5 7 1724 270 0 0 0 chr5 149384094 149384124 -3153135 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1724 588 195 109 0 chr5 149384124 149384252 -3153007 - B1_Mur4 SINE Alu -8 142 1 7 1724 21 57 0 0 chr5 149384559 149384594 -3152665 + AT_rich Low_complexity Low_complexity 1 35 0 7 1724 474 291 38 6 chr5 149385001 149385160 -3152099 + RSINE1 SINE B4 2 165 0 7 1724 982 221 39 0 chr5 149385268 149385476 -3151783 + B3 SINE B2 1 216 0 7 1724 26 0 0 0 chr5 149385768 149385794 -3151465 + AT_rich Low_complexity Low_complexity 1 26 0 7 1724 310 161 16 0 chr5 149385920 149385982 -3151277 - B3 SINE B2 -1 215 153 7 1724 933 225 80 0 chr5 149386970 149387170 -3150089 - B3 SINE B2 0 216 1 7 1724 28 91 0 0 chr5 149388220 149388297 -3148962 + AT_rich Low_complexity Low_complexity 1 77 0 7 1724 247 188 131 30 chr5 149389316 149389415 -3147844 - Lx9 LINE L1 -4 7640 7532 7 1724 289 93 18 18 chr5 149389420 149389475 -3147784 + (TA)n Simple_repeat Simple_repeat 1 55 0 7 1724 757 271 5 0 chr5 149389483 149389671 -3147588 - Lx9 LINE L1 -172 7472 7284 7 1724 283 277 28 21 chr5 149389719 149389863 -3147396 + (TA)n Simple_repeat Simple_repeat 1 145 0 7 1724 234 0 0 0 chr5 149390746 149390772 -3146487 + (T)n Simple_repeat Simple_repeat 1 26 0 7 1724 1301 164 5 9 chr5 149390789 149391005 -3146254 + B3 SINE B2 2 216 0 7 1724 342 0 0 0 chr5 149391113 149391151 -3146108 + HAL1-3A_ME LINE L1 1973 2010 -848 7 1724 485 333 23 12 chr5 149391164 149391337 -3145922 + (CATG)n Simple_repeat Simple_repeat 3 177 0 7 1724 2007 137 144 24 chr5 149392187 149392562 -3144697 + RLTR9B2 LTR ERVK 1 420 0 7 1724 461 333 161 45 chr5 149392582 149392805 -3144454 - MLT1J LTR MaLR -200 312 64 7 1724 231 114 0 0 chr5 149393467 149393502 -3143757 + (A)n Simple_repeat Simple_repeat 1 35 0 7 1724 1246 48 0 0 chr5 149394304 149394451 -3142808 + B1_Mus2 SINE Alu 1 147 0 7 1724 258 105 0 0 chr5 149394451 149394489 -3142770 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 7 1724 1050 243 158 37 chr5 149394489 149394844 -3142415 + MTD LTR MaLR 22 419 0 7 1724 189 235 130 14 chr5 149395099 149395168 -3142091 - L3 LINE CR1 -119 4370 4294 7 1724 406 255 101 112 chr5 149395303 149395581 -3141678 + ORR1E LTR MaLR 65 339 -20 7 1724 671 199 13 58 chr5 149395784 149395823 -3141436 - B1_Mur3 SINE Alu 0 149 119 7 1724 2851 66 141 139 chr5 149395823 149396334 -3140925 - RLTR1B LTR ERV1 0 512 1 7 1724 671 199 13 58 chr5 149396334 149396449 -3140810 - B1_Mur3 SINE Alu -31 118 2 7 1724 302 267 8 91 chr5 149396338 149396470 -3140789 - MT2B LTR ERVL -337 264 144 7 1724 316 279 103 11 chr5 149396715 149396802 -3140457 + PB1 SINE Alu 31 125 -2 7 1724 265 198 320 10 chr5 149397408 149397505 -3139754 + ORR1E LTR MaLR 64 190 -169 7 1724 231 278 185 0 chr5 149398326 149398434 -3138825 + MER3 DNA MER1_type 74 201 -8 7 1724 522 83 0 0 chr5 149398612 149398684 -3138575 + (GA)n Simple_repeat Simple_repeat 1 72 0 7 1724 449 248 12 4 chr5 149398685 149398951 -3138308 + (TG)n Simple_repeat Simple_repeat 1 268 0 7 1724 807 227 15 119 chr5 149399151 149399411 -3137848 - MER2 DNA MER2_type -10 335 103 7 1724 297 176 36 18 chr5 149399417 149399527 -3137732 + (TA)n Simple_repeat Simple_repeat 1 112 0 7 1724 1332 252 96 52 chr5 149400392 149400849 -3136410 + RMER5 LTR ERV1 48 524 -10 7 1724 1641 144 47 80 chr5 149401123 149401547 -3135712 - RMER17C LTR ERVK 0 410 1 7 1724 1195 48 0 20 chr5 149402055 149402204 -3135055 - B1_Mm SINE Alu 0 147 2 7 1724 557 192 55 29 chr5 149402518 149402681 -3134578 + RMER17C LTR ERVK 1 318 -588 7 1724 423 0 0 0 chr5 149402880 149402927 -3134332 + (TG)n Simple_repeat Simple_repeat 2 48 0 7 1724 233 29 29 0 chr5 149403986 149404020 -3133239 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 7 1724 370 217 24 152 chr5 149404225 149404350 -3132909 - MT2B LTR ERVL -299 302 194 7 1724 632 148 0 56 chr5 149404259 149404366 -3132893 - B1_Mus2 SINE Alu -26 121 21 7 1724 372 325 8 0 chr5 149404764 149404874 -3132385 + GA-rich Low_complexity Low_complexity 1 111 0 7 1724 249 33 0 0 chr5 149404874 149404904 -3132355 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 7 1724 191 61 0 29 chr5 149405708 149405742 -3131517 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 7 1724 1234 41 7 0 chr5 149405744 149405890 -3131369 - B1_Mm SINE Alu 0 147 1 7 1724 750 167 12 16 chr5 149405972 149406205 -3131054 + CT-rich Low_complexity Low_complexity 1 232 0 7 1724 378 288 113 109 chr5 149406591 149406848 -3130411 + MLT1N2 LTR MaLR 1 258 -304 7 1724 233 241 17 0 chr5 149406918 149406976 -3130283 + MLT1N2 LTR MaLR 463 521 -41 7 1724 567 78 0 0 chr5 149407309 149407422 -3129837 - L1_Mus3 LINE L1 0 6638 6548 7 1724 215 195 0 0 chr5 149407422 149407439 -3129820 + T-rich Low_complexity Low_complexity 3 19 0 7 1724 1110 125 130 0 chr5 149408425 149408609 -3128650 + URR1A DNA MER1_type 1 208 -18 7 1724 186 43 0 0 chr5 149408763 149408786 -3128473 + (TTC)n Simple_repeat Simple_repeat 2 24 0 7 1724 708 263 63 5 chr5 149408799 149408990 -3128269 - B3 SINE B2 -13 203 2 7 1724 2785 182 53 9 chr5 149409073 149409615 -3127644 + RLTR12A LTR ERVK 1 566 -2 7 1724 711 167 14 0 chr5 149410854 149410991 -3126268 + B1_Mus1 SINE Alu 1 150 0 7 1724 477 0 0 0 chr5 149412140 149412193 -3125066 + (CA)n Simple_repeat Simple_repeat 2 54 0 7 1724 232 353 139 7 chr5 149412193 149412330 -3124929 + MER21B LTR ERV1 18 172 -691 7 1724 591 167 148 0 chr5 149412356 149412464 -3124795 + B2_Mm2 SINE B2 1 124 -71 7 1724 288 0 0 0 chr5 149412531 149412563 -3124696 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 7 1724 433 327 32 45 chr5 149412567 149412724 -3124535 + MER21B LTR ERV1 182 336 -527 7 1724 318 180 0 0 chr5 149412726 149412787 -3124472 + CT-rich Low_complexity Low_complexity 2 62 0 7 1724 389 203 40 0 chr5 149412834 149412908 -3124351 - PB1D10 SINE Alu -17 100 24 7 1724 387 0 0 0 chr5 149412908 149412951 -3124308 + (TG)n Simple_repeat Simple_repeat 1 43 0 7 1724 299 295 108 6 chr5 149413582 149413749 -3123510 - L1MA8 LINE L1 -2 6289 6106 7 1724 476 250 35 0 chr5 149413925 149414041 -3123218 + B3 SINE B2 64 183 -33 7 1724 339 25 0 0 chr5 149414045 149414085 -3123174 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1724 351 0 0 0 chr5 149414089 149414128 -3123131 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 7 1724 230 0 33 0 chr5 149414401 149414431 -3122828 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8 1724 853 64 0 0 chr5 149414431 149414541 -3122718 - B1_Mm SINE Alu -11 136 27 8 1724 861 275 29 18 chr5 149414544 149414822 -3122437 - L1MA8 LINE L1 -478 5822 5542 7 1724 758 276 101 72 chr5 149414857 149415204 -3122055 - ORR1E LTR MaLR -2 357 1 8 1724 1826 295 152 38 chr5 149415204 149416038 -3121221 - MTE-int LTR MaLR -53 1527 598 8 1724 674 254 60 0 chr5 149416087 149416272 -3120987 - B3A SINE B2 0 198 3 8 1724 1185 231 123 15 chr5 149416324 149416650 -3120609 - ORR1D2 LTR MaLR -8 362 2 8 1724 326 311 126 42 chr5 149416656 149416847 -3120412 - MTE-int LTR MaLR -1050 530 324 8 1724 339 231 0 60 chr5 149416891 149416974 -3120285 + RSINE1 SINE B4 88 165 0 8 1724 310 314 46 103 chr5 149417038 149417120 -3120139 + ORR1E LTR MaLR 9 87 -272 8 1724 333 0 0 0 chr5 149417120 149417157 -3120102 + (TG)n Simple_repeat Simple_repeat 2 38 0 8 1724 310 314 46 103 chr5 149417157 149417269 -3119990 + ORR1E LTR MaLR 88 192 -167 8 1724 1002 268 172 29 chr5 149417807 149418295 -3118964 - L1MA8 LINE L1 -769 5371 4814 7 1724 2062 113 85 9 chr5 149418315 149418644 -3118615 - ORR1B1 LTR MaLR 0 394 41 8 1724 297 238 0 36 chr5 149418656 149418739 -3118520 + CT-rich Low_complexity Low_complexity 2 81 0 8 1724 673 284 32 18 chr5 149418757 149418976 -3118283 - L1MA8 LINE L1 -1382 4761 4540 7 1724 238 385 112 25 chr5 149419065 149419226 -3118033 + MIRb SINE MIR 40 214 -62 8 1724 321 89 0 0 chr5 149419252 149419297 -3117962 + (TA)n Simple_repeat Simple_repeat 1 45 0 8 1724 297 0 0 0 chr5 149419297 149419329 -3117930 + (CA)n Simple_repeat Simple_repeat 2 34 0 8 1724 922 296 49 0 chr5 149419435 149419699 -3117560 + B4A SINE B4 8 284 -8 8 1724 393 304 0 74 chr5 149420723 149420872 -3116387 - MER5A DNA MER1_type -42 147 10 8 1724 211 245 20 0 chr5 149421659 149421708 -3115551 + ID2 SINE ID 3 52 -31 8 1724 303 211 0 0 chr5 149421830 149421882 -3115377 - HAL1-3A_ME LINE L1 -831 2027 1976 8 1724 488 200 9 0 chr5 149421882 149421997 -3115262 + (TG)n Simple_repeat Simple_repeat 2 117 0 8 1725 818 236 28 24 chr5 149422576 149422789 -3114470 + B3 SINE B2 3 216 0 8 1725 1087 201 14 0 chr5 149423313 149423522 -3113737 - B3 SINE B2 0 216 5 8 1725 555 318 89 30 chr5 149423870 149424139 -3113120 - MLT1C LTR MaLR -112 355 71 8 1725 540 302 55 118 chr5 149424111 149424457 -3112802 - MTEa LTR MaLR -44 335 12 8 1725 857 239 32 50 chr5 149425367 149425587 -3111672 - B3 SINE B2 0 216 1 8 1725 1052 92 0 0 chr5 149425671 149425812 -3111447 + B2_Mm2 SINE B2 1 141 -54 8 1725 495 144 186 0 chr5 149425813 149425910 -3111349 + B1_Mm SINE Alu 33 147 0 8 1725 218 155 67 33 chr5 149425910 149425970 -3111289 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 8 1725 358 226 102 19 chr5 149426014 149426122 -3111137 - PB1D9 SINE Alu -1 119 3 8 1725 1472 69 16 0 chr5 149426402 149426590 -3110669 - B2_Mm2 SINE B2 -3 192 2 8 1725 22 35 0 0 chr5 149429222 149429251 -3108008 + AT_rich Low_complexity Low_complexity 1 29 0 8 1725 1030 185 82 0 chr5 149429251 149429300 -3107959 - B3 SINE B2 0 216 164 8 1725 1248 64 0 0 chr5 149429300 149429471 -3107788 + (TG)n Simple_repeat Simple_repeat 2 172 0 8 1725 1030 185 82 0 chr5 149429471 149429616 -3107643 - B3 SINE B2 -53 163 7 8 1725 201 108 0 0 chr5 149429875 149429912 -3107347 + (T)n Simple_repeat Simple_repeat 1 37 0 8 1725 2419 165 10 5 chr5 149429912 149430315 -3106944 + MTD LTR MaLR 12 416 -3 8 1725 284 286 57 85 chr5 149431292 149431468 -3105791 + L1ME1 LINE L1 5881 6051 -128 8 1725 645 277 122 53 chr5 149431963 149432266 -3104993 - MLT1A1 LTR MaLR -54 354 17 8 1725 226 259 35 0 chr5 149432318 149432376 -3104883 + PB1D10 SINE Alu 43 102 -15 8 1725 782 49 0 10 chr5 149432380 149432484 -3104775 + (GGAAA)n Simple_repeat Simple_repeat 3 105 0 8 1725 302 293 12 3 chr5 149432488 149432566 -3104693 + ID4_ SINE ID 2 82 -70 8 1725 399 271 87 40 chr5 149432612 149432785 -3104474 - L1MB5 LINE L1 -133 6041 5861 8 1725 238 262 118 35 chr5 149433411 149433542 -3103717 - MIR SINE MIR -2 266 108 8 1725 2536 118 86 2 chr5 149433542 149433949 -3103310 + BGLII_B LTR ERVK 1 441 0 8 1725 360 0 0 0 chr5 149434016 149434056 -3103203 + (CA)n Simple_repeat Simple_repeat 2 41 0 8 1725 672 199 28 32 chr5 149434143 149434338 -3102921 - B3 SINE B2 0 195 3 8 1725 258 226 138 65 chr5 149434674 149434797 -3102462 + MLT1B LTR MaLR 254 385 -5 8 1725 320 0 25 0 chr5 149435132 149435172 -3102087 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8 1725 600 265 58 16 chr5 149435188 149435376 -3101883 - B3A SINE B2 0 198 3 8 1725 1171 58 0 0 chr5 149435795 149435934 -3101325 + B1_Mus1 SINE Alu 1 139 -9 8 1725 276 53 0 0 chr5 149435934 149435972 -3101287 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 8 1725 401 164 0 15 chr5 149436103 149436171 -3101088 + B1_Mur2 SINE Alu 32 98 -51 8 1725 457 263 32 38 chr5 149436210 149436341 -3100918 + MLT1D LTR MaLR 289 518 -109 8 1725 1002 238 24 0 chr5 149437353 149437563 -3099696 + B3 SINE B2 2 216 0 8 1725 7779 68 5 3 chr5 149438783 149440190 -3097069 + L1_Mus1 LINE L1 5157 6567 0 8 1725 734 78 10 0 chr5 149440345 149440447 -3096812 + B2_Mm2 SINE B2 1 103 -92 8 1725 354 256 140 79 chr5 149440504 149440647 -3096612 - ORR1E LTR MaLR -169 190 32 8 1725 414 69 0 0 chr5 149440647 149440705 -3096554 + (TG)n Simple_repeat Simple_repeat 1 58 0 8 1725 354 256 140 79 chr5 149440705 149440739 -3096520 - ORR1E LTR MaLR -328 31 2 8 1725 252 0 0 0 chr5 149441145 149441173 -3096086 + (ATG)n Simple_repeat Simple_repeat 3 30 0 8 1725 881 103 30 1 chr5 149441184 149441329 -3095930 - B2_Mm2 SINE B2 -57 159 1 8 1725 25 0 0 0 chr5 149441757 149441782 -3095477 + AT_rich Low_complexity Low_complexity 1 25 0 8 1725 1180 122 6 6 chr5 149441782 149441964 -3095295 - B2_Mm2 SINE B2 0 195 14 8 1725 194 323 16 16 chr5 149443971 149444034 -3093225 - MIRm SINE MIR -128 148 86 8 1725 216 86 0 0 chr5 149446330 149446365 -3090894 + (CA)n Simple_repeat Simple_repeat 1 35 0 8 1725 221 155 17 0 chr5 149446440 149446498 -3090761 + CT-rich Low_complexity Low_complexity 2 60 0 8 1725 488 178 14 34 chr5 149447439 149447797 -3089462 + (TG)n Simple_repeat Simple_repeat 1 350 0 8 1725 639 292 58 0 chr5 149447819 149447973 -3089286 - RSINE1 SINE B4 0 165 3 8 1725 271 296 62 0 chr5 149448217 149448298 -3088961 - ORR1E LTR MaLR -260 99 14 8 1725 252 208 35 25 chr5 149448862 149449071 -3088188 + CT-rich Low_complexity Low_complexity 1 211 0 8 1725 306 328 157 0 chr5 149449113 149449247 -3088012 - HAL1-3A_ME LINE L1 -420 2438 2284 8 1725 622 176 0 26 chr5 149449852 149450096 -3087163 + (TG)n Simple_repeat Simple_repeat 1 237 0 8 1725 679 219 15 0 chr5 149450126 149450263 -3086996 - B3A SINE B2 -59 139 1 8 1725 1117 292 100 15 chr5 149450894 149451120 -3086139 + ORR1D2 LTR MaLR 13 258 -112 8 1725 330 26 0 0 chr5 149451120 149451159 -3086100 + (CCA)n Simple_repeat Simple_repeat 3 41 0 8 1725 1117 292 100 15 chr5 149451159 149451262 -3085997 + ORR1D2 LTR MaLR 259 369 -1 8 1725 283 319 20 94 chr5 149451396 149451545 -3085714 - MLT1G1 LTR MaLR -327 252 115 8 1725 2712 62 9 0 chr5 149451675 149451999 -3085260 - ORR1A2 LTR MaLR 0 327 1 8 1725 1947 102 31 22 chr5 149452389 149452708 -3084551 - RLTRETN_Mm LTR ERVK 0 322 1 8 1725 3367 52 16 11 chr5 149452708 149453153 -3084106 - ETnERV-int LTR ERVK 0 3314 2868 8 1725 1643 95 5 9 chr5 149453153 149453377 -3083882 - RLTRETN_Mm LTR ERVK -99 223 1 8 1725 3321 24 39 0 chr5 149454300 149454681 -3082578 - MTA_Mm LTR MaLR 0 396 1 8 1725 225 0 0 0 chr5 149456008 149456033 -3081226 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1725 669 209 191 6 chr5 149456040 149456218 -3081041 - B3 SINE B2 -1 215 5 8 1725 2097 146 46 16 chr5 149456940 149457308 -3079951 + RLTR14 LTR ERV1 1 379 -3 8 1725 212 266 146 9 chr5 149457447 149457557 -3079702 - B1F SINE Alu -24 125 1 8 1725 689 304 118 92 chr5 149457733 149458081 -3079178 - MLT1A LTR MaLR -17 357 1 8 1725 269 51 26 0 chr5 149460298 149460337 -3076922 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 8 1725 229 275 90 84 chr5 149460870 149461025 -3076234 + MTEa LTR MaLR 206 361 -18 8 1725 243 0 0 0 chr5 149461364 149461391 -3075868 + (T)n Simple_repeat Simple_repeat 1 27 0 8 1725 1283 34 0 0 chr5 149461405 149461552 -3075707 - B1_Mm SINE Alu 0 147 1 8 1725 310 364 24 18 chr5 149464379 149464544 -3072715 - HAL1-3A_ME LINE L1 -421 2437 2272 8 1725 552 237 0 0 chr5 149465372 149465490 -3071769 + PB1D9 SINE Alu 3 120 0 8 1725 353 198 9 0 chr5 149465493 149465604 -3071655 + (TA)n Simple_repeat Simple_repeat 2 113 0 8 1725 906 192 54 103 chr5 149465644 149465811 -3071448 + B3A SINE B2 3 161 -34 8 1725 236 30 30 0 chr5 149465811 149465844 -3071415 + (CA)n Simple_repeat Simple_repeat 1 34 0 8 1725 656 192 54 103 chr5 149465844 149465879 -3071380 + B2_Mm2 SINE B2 162 195 0 8 1725 1290 317 83 14 chr5 149466026 149466532 -3070727 + MER44B DNA MER2_type 7 547 -3 8 1725 305 226 38 0 chr5 149466631 149466720 -3070539 + ID4 SINE ID 2 99 -53 8 1725 196 362 14 0 chr5 149466757 149466826 -3070433 - MIR SINE MIR -182 80 11 8 1725 278 50 25 0 chr5 149467824 149467864 -3069395 + (TG)n Simple_repeat Simple_repeat 2 42 0 8 1725 455 48 16 0 chr5 149467909 149467971 -3069288 + (TG)n Simple_repeat Simple_repeat 2 64 0 8 1725 306 0 0 26 chr5 149468016 149468054 -3069205 - HAL1-3A_ME LINE L1 -846 2012 1976 8 1725 410 36 18 0 chr5 149468075 149468131 -3069128 + (TG)n Simple_repeat Simple_repeat 2 58 0 8 1725 284 48 24 0 chr5 149468221 149468263 -3068996 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1725 201 39 0 0 chr5 149468318 149468344 -3068915 + (TG)n Simple_repeat Simple_repeat 1 26 0 8 1725 709 222 27 49 chr5 149468344 149468529 -3068730 - B3A SINE B2 -16 182 2 8 1725 2514 145 104 26 chr5 149468716 149468788 -3068471 - RLTR11A LTR ERVK 0 528 457 8 1725 459 0 0 0 chr5 149468788 149468839 -3068420 + (CA)n Simple_repeat Simple_repeat 2 52 0 9 1725 2514 145 104 26 chr5 149468839 149469256 -3068003 - RLTR11A LTR ERVK -72 456 1 8 1725 1334 168 39 4 chr5 149469258 149469515 -3067744 + MYSERV16_I-int LTR ERVK 1191 1456 -870 9 1725 286 315 32 116 chr5 149469758 149469948 -3067311 + L3 LINE CR1 3753 3926 -563 9 1725 1164 70 0 0 chr5 149470238 149470410 -3066849 + (TC)n Simple_repeat Simple_repeat 1 172 0 9 1725 572 83 9 60 chr5 149471333 149471449 -3065810 + (CA)n Simple_repeat Simple_repeat 2 111 0 9 1725 342 0 0 0 chr5 149471465 149471503 -3065756 + (CAGA)n Simple_repeat Simple_repeat 2 39 0 9 1725 642 243 13 26 chr5 149471546 149471698 -3065561 + RSINE1 SINE B4 2 151 -14 9 1725 351 0 0 0 chr5 149471873 149471912 -3065347 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1725 1649 171 90 41 chr5 149472049 149472272 -3064987 + ORR1C2 LTR MaLR 1 237 -147 9 1725 204 40 0 0 chr5 149472272 149472297 -3064962 + (CCTG)n Simple_repeat Simple_repeat 4 28 0 9 1725 1649 171 90 41 chr5 149472297 149472439 -3064820 + ORR1C2 LTR MaLR 238 383 -1 9 1725 275 333 29 0 chr5 149472476 149472581 -3064678 - L2b LINE L2 -6 3369 3262 9 1725 1048 209 28 28 chr5 149472761 149472977 -3064282 + B3 SINE B2 1 216 0 9 1725 218 287 70 114 chr5 149473096 149473210 -3064049 + B4 SINE B4 58 166 -126 9 1725 270 0 0 0 chr5 149473597 149473627 -3063632 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1725 196 30 29 29 chr5 149474633 149474667 -3062592 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 9 1725 284 310 27 3 chr5 149475633 149475724 -3061535 - ID4 SINE ID -60 92 1 9 1725 280 373 15 7 chr5 149476197 149476332 -3060927 - MER2 DNA MER2_type -93 252 117 9 1725 1422 193 125 18 chr5 149476639 149476790 -3060469 + ORR1D1 LTR MaLR 13 163 -211 9 1725 981 46 0 0 chr5 149476790 149476921 -3060338 + (TC)n Simple_repeat Simple_repeat 2 132 0 9 1725 348 24 0 0 chr5 149476921 149476961 -3060298 + (TG)n Simple_repeat Simple_repeat 2 42 0 9 1725 1422 193 125 18 chr5 149476961 149477135 -3060124 + ORR1D1 LTR MaLR 164 373 -1 9 1725 1300 98 16 32 chr5 149477427 149477616 -3059643 + B2_Mm2 SINE B2 2 187 -8 9 1725 270 0 0 0 chr5 149478239 149478269 -3058990 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 9 1725 1083 54 0 0 chr5 149478269 149478416 -3058843 + (GGGAA)n Simple_repeat Simple_repeat 2 148 0 9 1725 201 147 0 0 chr5 149478424 149478458 -3058801 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 9 1725 3362 93 8 43 chr5 149479112 149479604 -3057655 + MT2C_Mm LTR ERVL 1 475 0 9 1725 6255 100 26 81 chr5 149479604 149480912 -3056347 + MT-int LTR MaLR 1 1258 0 9 1725 3345 48 5 2 chr5 149480912 149481311 -3055948 + MTB LTR MaLR 1 400 0 9 1725 335 253 92 100 chr5 149481480 149481730 -3055529 - L1MC4 LINE L1 -4 8038 7791 9 1725 262 102 307 29 chr5 149482393 149482459 -3054800 + B3 SINE B2 1 70 -146 9 1725 3021 125 2 5 chr5 149483076 149483510 -3053749 - RLTR10C LTR ERVK -3 433 1 9 1725 351 65 0 0 chr5 149483764 149483810 -3053449 + (CACCAT)n Simple_repeat Simple_repeat 1 46 0 9 1725 190 136 0 43 chr5 149483810 149483856 -3053403 + CT-rich Low_complexity Low_complexity 2 45 0 9 1725 946 258 9 5 chr5 149483860 149484070 -3053189 - B3 SINE B2 -5 211 1 9 1725 416 288 98 93 chr5 149484712 149484752 -3052507 - L1MD LINE L1 -2147 3999 3959 9 1725 234 0 0 0 chr5 149484752 149484778 -3052481 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1725 416 288 98 93 chr5 149484778 149485166 -3052093 - L1MD LINE L1 -2188 3958 3570 9 1725 230 221 40 81 chr5 149485707 149485781 -3051478 + RMER19C LTR ERVK 57 127 -484 9 1725 378 225 2 14 chr5 149485942 149486033 -3051226 - ORR1D2 LTR MaLR 0 370 289 9 1725 205 156 0 0 chr5 149486162 149486194 -3051065 + G-rich Low_complexity Low_complexity 3 34 0 9 1725 1103 110 0 11 chr5 149486542 149486717 -3050542 + (TCCCC)n Simple_repeat Simple_repeat 4 176 0 9 1725 254 206 0 14 chr5 149486719 149486788 -3050471 + CT-rich Low_complexity Low_complexity 3 70 0 9 1725 370 222 126 27 chr5 149486788 149486899 -3050360 - L1MD LINE L1 -946 5398 5277 9 1725 1029 209 43 10 chr5 149486909 149487117 -3050142 + B3 SINE B2 2 216 0 9 1725 2875 36 2 123 chr5 149487356 149487771 -3049488 - RLTR10B2 LTR ERVK 0 365 1 9 1725 4104 143 15 3 chr5 149487771 149488449 -3048810 - IAPEY3-int LTR ERVK 0 7680 6995 9 1725 1554 87 100 0 chr5 149488453 149488684 -3048575 - IAP-d-int LTR ERVK -1287 5255 5002 9 1725 460 298 25 24 chr5 149488697 149488967 -3048292 - IAP-d-int LTR ERVK -5520 1022 829 9 1725 2868 29 0 3 chr5 149489114 149489456 -3047803 - RLTR10-int LTR ERVK -995 992 652 9 1725 325 89 0 0 chr5 149489459 149489504 -3047755 - RLTR10-int LTR ERVK -6405 137 93 9 1725 659 57 41 41 chr5 149489504 149489651 -3047608 + (TTTCC)n Simple_repeat Simple_repeat 3 149 0 9 1725 1369 33 4 3 chr5 149489739 149489917 -3047342 - RLTR10-int LTR ERVK -7314 267 40 9 1725 2776 63 5 69 chr5 149489926 149490316 -3046943 - RLTR10B2 LTR ERVK 0 365 1 9 1725 729 239 42 28 chr5 149490404 149490619 -3046640 + RLTR45 LTR ERVK 265 482 0 9 1725 404 307 36 12 chr5 149490619 149490787 -3046472 - L1MD LINE L1 -879 5267 5096 9 1725 3365 229 44 37 chr5 149490851 149491640 -3045619 + RMER1C Other Other 445 1235 -107 9 1725 204 40 0 0 chr5 149491640 149491665 -3045594 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 9 1725 3365 229 44 37 chr5 149491665 149491758 -3045501 + RMER1C Other Other 1236 1332 -10 9 1725 207 0 0 0 chr5 149491760 149491783 -3045476 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 9 1725 513 253 98 12 chr5 149491846 149492010 -3045249 + MTD LTR MaLR 47 224 -195 9 1725 225 324 14 0 chr5 149492053 149492124 -3045135 + LTR48B LTR ERV1 436 507 -137 9 1725 387 206 127 27 chr5 149492166 149492276 -3044983 - RLTR15 LTR ERVK -238 121 1 9 1725 371 281 22 0 chr5 149492276 149492361 -3044898 + LTR48B LTR ERV1 557 643 -1 9 1725 23 0 0 0 chr5 149492450 149492473 -3044786 + AT_rich Low_complexity Low_complexity 1 23 0 9 1725 658 295 210 51 chr5 149492892 149492942 -3044317 + MER44C DNA MER2_type 48 118 -615 9 1725 1911 166 38 30 chr5 149492942 149493315 -3043944 - ORR1C1 LTR MaLR 0 378 3 9 1725 658 350 96 26 chr5 149493315 149493587 -3043672 + MER44C DNA MER2_type 118 404 -329 9 1725 1355 87 33 0 chr5 149493588 149493772 -3043487 + B2_Mm1t SINE B2 2 191 -2 9 1725 961 276 45 62 chr5 149493887 149494212 -3043047 + MTEa LTR MaLR 1 321 -58 9 1725 742 217 178 0 chr5 149494212 149494392 -3042867 + B3 SINE B2 2 213 -3 9 1725 961 276 45 62 chr5 149494392 149494418 -3042841 + MTEa LTR MaLR 322 346 -33 9 1725 339 291 126 51 chr5 149494418 149494632 -3042627 + HAL1-3A_ME LINE L1 1977 2206 -652 9 1725 237 145 32 16 chr5 149494652 149494715 -3042544 + GA-rich Low_complexity Low_complexity 4 67 0 9 1725 310 273 140 10 chr5 149494991 149495091 -3042168 + PB1D10 SINE Alu 5 117 0 9 1725 658 280 112 57 chr5 149495911 149496506 -3040753 + L1MB8 LINE L1 5537 6159 -25 9 1725 1370 256 26 115 chr5 149496514 149496796 -3040463 + MTE2a LTR MaLR 1 283 -96 9 1725 1093 210 236 15 chr5 149496796 149497139 -3040120 + MTD LTR MaLR 1 419 0 9 1725 1370 256 26 115 chr5 149497139 149497224 -3040035 + MTE2a LTR MaLR 284 348 -31 9 1725 964 152 7 0 chr5 149497224 149497369 -3039890 - B1_Mus2 SINE Alu 0 147 2 9 1725 1370 256 26 115 chr5 149497369 149497416 -3039843 + MTE2a LTR MaLR 349 379 0 9 1725 284 211 35 0 chr5 149497719 149497776 -3039483 - tRNA-Ala-GCA tRNA tRNA -9 66 8 9 1725 424 106 0 0 chr5 149497959 149498025 -3039234 - B2_Mm1a SINE B2 -1 192 127 9 1725 1254 82 58 0 chr5 149498076 149498247 -3039012 - B2_Mm2 SINE B2 -14 181 1 9 1725 1131 115 16 6 chr5 149498637 149498820 -3038439 - ORR1A3 LTR MaLR -137 189 5 9 1725 284 253 25 25 chr5 149498822 149498903 -3038356 - RMER15 LTR ERVL -147 428 348 9 1725 2697 62 9 0 chr5 149498969 149499293 -3037966 + ORR1A2 LTR MaLR 1 327 0 9 1725 22 0 0 0 chr5 149499915 149499937 -3037322 + AT_rich Low_complexity Low_complexity 1 22 0 9 1725 201 226 170 0 chr5 149501206 149501259 -3036000 - MER5B DNA MER1_type -23 155 94 1 1725 270 0 0 0 chr5 149501648 149501678 -3035581 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2 1725 392 350 133 12 chr5 149502181 149502346 -3034913 - MIR SINE MIR -58 204 20 3 1725 440 234 182 71 chr5 149503214 149503384 -3033875 + B3A SINE B2 2 190 -5 4 1725 979 68 8 15 chr5 149503679 149503813 -3033446 + B2_Mm1t SINE B2 47 179 -14 5 1725 445 57 312 28 chr5 149503840 149503948 -3033311 + B2_Mm2 SINE B2 46 189 -6 6 1725 907 137 184 37 chr5 149504102 149504292 -3032967 - URR1A DNA MER1_type -3 223 6 7 1725 517 283 82 31 chr5 149505046 149505116 -3032143 + ID_B1 SINE B4 18 184 -108 8 1725 896 94 63 0 chr5 149505116 149505243 -3032016 + B1_Mus1 SINE Alu 14 148 0 9 1725 517 283 82 31 chr5 149505243 149505270 -3031989 + ID_B1 SINE B4 185 253 -39 8 1725 27 0 0 0 chr5 149505273 149505300 -3031959 + AT_rich Low_complexity Low_complexity 1 27 0 1 1725 1011 156 50 11 chr5 149505612 149505794 -3031465 - URR1B DNA MER1_type 0 225 37 1 1725 231 211 0 34 chr5 149506523 149506582 -3030677 - ID_B1 SINE B4 -89 135 79 1 1725 2534 122 133 5 chr5 149506708 149507121 -3030138 + RMER4A LTR ERVK 1 466 0 1 1725 1444 133 0 43 chr5 149507300 149507535 -3029724 - URR1B DNA MER1_type 0 225 1 1 1725 324 323 33 90 chr5 149507569 149507780 -3029479 + RMER15 LTR ERVL 319 517 -58 1 1725 390 208 6 13 chr5 149508550 149508706 -3028553 + (TG)n Simple_repeat Simple_repeat 2 156 0 1 1725 396 38 76 0 chr5 149510379 149510458 -3026801 + (TTTTG)n Simple_repeat Simple_repeat 2 86 0 1 1725 198 0 0 0 chr5 149510630 149510652 -3026607 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 1 1725 21 0 0 0 chr5 149510877 149510898 -3026361 + AT_rich Low_complexity Low_complexity 1 21 0 1 1725 1394 77 22 5 chr5 149510909 149511093 -3026166 + B2_Mm2 SINE B2 1 187 -8 2 1725 574 218 27 0 chr5 149511101 149511211 -3026048 + B3A SINE B2 2 114 -84 2 1725 547 269 130 134 chr5 149511268 149511430 -3025829 + RLTR16 LTR ERVK 1 181 -324 2 1725 474 18 0 0 chr5 149511430 149511485 -3025774 + (GA)n Simple_repeat Simple_repeat 1 55 0 2 1725 547 269 130 134 chr5 149511485 149511738 -3025521 + RLTR16 LTR ERVK 182 413 -92 2 1725 504 93 0 0 chr5 149511738 149511813 -3025446 + (TG)n Simple_repeat Simple_repeat 2 76 0 2 1725 547 269 130 134 chr5 149511813 149511903 -3025356 + RLTR16 LTR ERVK 414 504 -1 2 1725 1025 214 50 0 chr5 149512140 149512341 -3024918 - B3 SINE B2 -4 212 2 2 1725 1422 143 0 39 chr5 149512415 149512648 -3024611 + URR1B DNA MER1_type 2 225 0 2 1725 254 222 63 89 chr5 149512840 149512998 -3024261 + L1MB3 LINE L1 6015 6168 -15 2 1725 2550 33 10 3 chr5 149514017 149514323 -3022936 + L1Md_F3 LINE L1 6263 6570 -14 2 1725 312 312 68 27 chr5 149514596 149514744 -3022515 - L2b LINE L2 -11 3364 3211 2 1725 3377 48 5 0 chr5 149514954 149515352 -3021907 - MTB LTR MaLR 0 400 1 3 1725 367 210 285 49 chr5 149515654 149515777 -3021482 - RSINE1 SINE B4 -7 158 7 3 1725 404 95 27 0 chr5 149515874 149515948 -3021311 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 3 1725 297 0 0 0 chr5 149516026 149516059 -3021200 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 1725 214 353 68 10 chr5 149516117 149516220 -3021039 - L3 LINE CR1 -821 3668 3560 3 1725 525 312 44 55 chr5 149517234 149517505 -3019754 - ORR1E LTR MaLR -52 307 40 3 1725 358 192 149 28 chr5 149517588 149517695 -3019564 - MER53 DNA hAT -37 156 37 3 1725 1452 84 0 5 chr5 149517716 149517907 -3019352 + B2_Mm2 SINE B2 3 192 -3 3 1725 380 283 54 61 chr5 149517932 149518079 -3019180 - MLT1K LTR MaLR -372 223 78 3 1725 859 277 0 22 chr5 149519242 149519423 -3017836 - B3A SINE B2 -21 177 1 3 1725 198 0 0 0 chr5 149519459 149519481 -3017778 + (GGGTG)n Simple_repeat Simple_repeat 5 26 0 4 1725 214 217 244 35 chr5 149519816 149519902 -3017357 - MIRb SINE MIR -131 137 34 4 1725 374 285 142 24 chr5 149521591 149521760 -3015499 + RMER5 LTR ERV1 33 221 -313 4 1725 1318 188 99 18 chr5 149521773 149522055 -3015204 + MTD LTR MaLR 74 378 -41 4 1725 922 299 17 24 chr5 149522087 149522375 -3014884 + RMER5 LTR ERV1 232 517 -17 4 1725 249 33 0 0 chr5 149522645 149522675 -3014584 + (CCA)n Simple_repeat Simple_repeat 1 30 0 4 1725 189 0 0 0 chr5 149522675 149522696 -3014563 + (CAA)n Simple_repeat Simple_repeat 3 23 0 4 1725 863 204 118 5 chr5 149522819 149523006 -3014253 + B3 SINE B2 4 211 -5 4 1725 1127 104 66 0 chr5 149523257 149523439 -3013820 + B2_Mm2 SINE B2 2 195 0 4 1725 345 265 29 10 chr5 149523440 149523543 -3013716 - PB1D10 SINE Alu -12 105 1 4 1725 2976 145 113 9 chr5 149524094 149524624 -3012635 + RMER4B LTR ERVK 1 585 0 4 1725 925 145 0 0 chr5 149524985 149525123 -3012136 + B1_Mus1 SINE Alu 6 143 -5 5 1725 368 253 45 64 chr5 149524989 149525145 -3012114 + B4A SINE B4 94 246 -46 5 1725 810 156 0 48 chr5 149525160 149525349 -3011910 + GA-rich Low_complexity Low_complexity 1 180 0 5 1725 223 129 0 0 chr5 149525349 149525380 -3011879 + (AGGGGG)n Simple_repeat Simple_repeat 2 32 0 5 1725 281 120 40 0 chr5 149525771 149525821 -3011438 - MTD LTR MaLR -366 53 2 5 1725 3021 54 33 10 chr5 149525821 149526212 -3011047 - MTB LTR MaLR 0 400 1 5 1725 1704 171 82 24 chr5 149526320 149526661 -3010598 + MTD LTR MaLR 59 419 0 5 1725 257 276 21 4 chr5 149527578 149527655 -3009604 - MIRm SINE MIR -89 173 93 5 1725 462 224 25 41 chr5 149528618 149528739 -3008520 - B1F SINE Alu -30 119 1 5 1725 345 347 60 77 chr5 149529065 149529348 -3007911 - LTR33A LTR ERVL -230 301 8 5 1725 2059 85 44 29 chr5 149529707 149530023 -3007236 + ORR1A4 LTR MaLR 1 321 -8 6 1725 351 0 0 0 chr5 149530412 149530451 -3006808 + (CA)n Simple_repeat Simple_repeat 1 39 0 6 1725 676 200 0 16 chr5 149530456 149530583 -3006676 + B3 SINE B2 46 170 -46 6 1725 2084 214 54 36 chr5 149530898 149531401 -3005858 + RMER19C LTR ERVK 92 603 -8 6 1725 1138 101 47 18 chr5 149531402 149531573 -3005686 + B2_Mm2 SINE B2 1 176 -19 6 1725 341 43 21 0 chr5 149531573 149531620 -3005639 + (GA)n Simple_repeat Simple_repeat 1 48 0 6 1725 2087 206 67 12 chr5 149533135 149533567 -3003692 + MT2A LTR ERVL 2 457 -76 6 1725 1048 83 0 27 chr5 149534363 149534511 -3002748 + B1_Mus1 SINE Alu 5 148 0 6 1725 294 268 87 26 chr5 149534929 149535044 -3002215 - MLT1A1 LTR MaLR -117 291 170 6 1725 775 211 55 23 chr5 149535544 149535745 -3001514 + B3A SINE B2 1 197 -1 6 1725 2548 179 39 16 chr5 149536041 149536553 -3000706 - RLTR11A2 LTR ERVK -3 524 1 7 1725 525 16 0 0 chr5 149537021 149537083 -3000176 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 7 1725 396 97 0 0 chr5 149537119 149537181 -3000078 + (TG)n Simple_repeat Simple_repeat 2 63 0 7 1725 3150 44 44 0 chr5 149537380 149537763 -2999496 - MTB LTR MaLR 0 400 1 7 1725 1199 183 14 0 chr5 149538096 149538304 -2998955 + B3 SINE B2 1 211 -5 7 1725 270 0 0 0 chr5 149538396 149538426 -2998833 + (GA)n Simple_repeat Simple_repeat 1 30 0 7 1725 549 80 0 0 chr5 149538743 149538818 -2998441 + (GAAAA)n Simple_repeat Simple_repeat 2 76 0 7 1725 216 0 0 0 chr5 149541751 149541775 -2995484 + (T)n Simple_repeat Simple_repeat 1 24 0 7 1725 788 231 65 75 chr5 149542468 149542669 -2994590 + B3 SINE B2 10 208 -8 7 1725 230 228 98 98 chr5 149542598 149542710 -2994549 - RMER12 LTR ERVK -513 809 698 7 1725 226 128 0 161 chr5 149542756 149542812 -2994447 - RMER6B LTR ERVK -3 458 412 8 1725 1336 90 72 59 chr5 149542819 149543056 -2994203 - RMER6B LTR ERVK -221 240 1 8 1725 198 0 0 0 chr5 149543121 149543143 -2994116 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 8 1725 1231 56 0 0 chr5 149543153 149543297 -2993962 - B1_Mm SINE Alu -2 145 2 8 1725 1332 147 0 39 chr5 149543415 149543649 -2993610 - URR1B DNA MER1_type 0 225 1 8 1725 185 286 0 0 chr5 149544080 149544122 -2993137 + MIRc SINE MIR 111 152 -116 8 1725 298 328 144 30 chr5 149544177 149544447 -2992812 - ORR1E LTR MaLR -53 306 6 8 1725 711 180 36 0 chr5 149546294 149546433 -2990826 - URR1A DNA MER1_type -2 224 81 8 1725 2594 55 15 3 chr5 149546437 149546764 -2990495 - IAPEY_LTR LTR ERVK 0 385 55 8 1725 250 196 0 21 chr5 149546762 149546809 -2990450 - URR1B DNA MER1_type -179 46 1 8 1725 232 293 0 0 chr5 149546895 149546953 -2990306 + MLT1F2 LTR MaLR 41 98 -462 8 1725 183 80 0 0 chr5 149546982 149547007 -2990252 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8 1725 924 9 0 0 chr5 149547090 149547195 -2990064 + (TCTCCC)n Simple_repeat Simple_repeat 2 106 0 9 1725 333 287 0 2 chr5 149547252 149547353 -2989906 + BC1_Mm scRNA scRNA 2 102 -50 9 1725 1116 180 20 10 chr5 149547690 149547892 -2989367 - B3 SINE B2 -11 205 2 9 1725 423 186 0 0 chr5 149548353 149548423 -2988836 - B3 SINE B2 -131 85 16 9 1725 387 0 0 0 chr5 149548430 149548473 -2988786 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1725 324 175 0 0 chr5 149548484 149548547 -2988712 + (TA)n Simple_repeat Simple_repeat 2 64 0 9 1725 577 282 90 22 chr5 149548550 149548818 -2988441 - Lx8 LINE L1 -20 7453 7168 9 1725 389 192 4 36 chr5 149548843 149549101 -2988158 + C-rich Low_complexity Low_complexity 1 249 0 9 1725 232 144 141 23 chr5 149549094 149549222 -2988037 + (CATCC)n Simple_repeat Simple_repeat 4 146 0 9 1725 854 323 55 0 chr5 149549225 149549569 -2987690 - Lx8 LINE L1 -314 7159 6797 9 1725 2635 150 61 8 chr5 149549586 149550098 -2987161 + RMER1B Other Other 83 1063 -3 9 1725 351 154 43 152 chr5 149550204 149550296 -2986963 - B1_Mur4 SINE Alu -67 83 2 1 1725 247 277 172 6 chr5 149550924 149551085 -2986174 + MIRb SINE MIR 53 236 -32 1 1725 384 22 0 0 chr5 149552085 149552130 -2985129 + (TG)n Simple_repeat Simple_repeat 2 46 0 1 1725 21 0 0 0 chr5 149552403 149552424 -2984835 + AT_rich Low_complexity Low_complexity 1 21 0 1 1725 305 228 0 0 chr5 149553046 149553103 -2984156 - L2c LINE L2 -3 3384 3328 1 1726 266 200 0 30 chr5 149553754 149553814 -2983445 - B3A SINE B2 -139 56 1 1 1726 968 206 85 10 chr5 149553834 149554035 -2983224 - B3 SINE B2 0 216 1 1 1726 414 301 133 0 chr5 149554528 149554701 -2982558 + B3A SINE B2 3 198 0 1 1726 227 336 116 71 chr5 149554942 149555278 -2981981 - MLT1J LTR MaLR -55 457 107 1 1726 2250 81 39 0 chr5 149555942 149556249 -2981010 + ORR1A2 LTR MaLR 1 319 -8 1 1726 951 172 103 47 chr5 149556561 149556774 -2980485 - URR1A DNA MER1_type -1 225 1 1 1726 226 266 0 240 chr5 149557038 149557142 -2980117 + PB1D10 SINE Alu 1 79 -38 1 1726 1314 261 69 11 chr5 149557257 149557632 -2979627 - MTD LTR MaLR 0 419 23 1 1726 2485 133 47 28 chr5 149558151 149558621 -2978638 - RLTR44D LTR ERVK -7 479 1 1 1726 309 307 31 80 chr5 149558622 149558762 -2978497 + B4A SINE B4 95 226 -66 1 1726 267 31 0 0 chr5 149558762 149558794 -2978465 + (GGA)n Simple_repeat Simple_repeat 3 34 0 1 1726 309 307 31 80 chr5 149558794 149558816 -2978443 + B4A SINE B4 227 248 -44 1 1726 635 316 0 31 chr5 149559012 149559175 -2978084 + RSINE1 SINE B4 2 159 -6 1 1726 37 0 0 0 chr5 149559189 149559226 -2978033 + AT_rich Low_complexity Low_complexity 1 37 0 1 1726 1194 171 18 27 chr5 149559464 149559687 -2977572 - URR1B DNA MER1_type -2 223 3 1 1726 486 348 95 81 chr5 149559932 149560342 -2976917 - RMER5 LTR ERV1 -41 493 78 1 1726 250 272 22 100 chr5 149560390 149560480 -2976779 - MER34 LTR ERV1 -84 458 376 1 1726 826 209 131 0 chr5 149560799 149560990 -2976269 + B3 SINE B2 1 216 0 1 1726 387 0 0 0 chr5 149561111 149561154 -2976105 + (CA)n Simple_repeat Simple_repeat 1 43 0 1 1726 400 181 34 132 chr5 149561347 149561492 -2975767 + PB1D7 SINE Alu 13 141 -8 1 1726 432 0 0 0 chr5 149561984 149562032 -2975227 + (TG)n Simple_repeat Simple_repeat 2 49 0 1 1726 926 212 22 30 chr5 149562048 149562258 -2975001 + ORR1B1 LTR MaLR 1 223 -171 1 1726 237 250 17 0 chr5 149562304 149562364 -2974895 - B3 SINE B2 -1 215 155 1 1726 512 264 28 0 chr5 149562464 149562608 -2974651 - MER2 DNA MER2_type -124 221 74 1 1726 529 252 38 15 chr5 149562599 149562732 -2974527 - B3A SINE B2 0 198 63 1 1726 423 56 0 0 chr5 149562764 149562818 -2974441 + (TC)n Simple_repeat Simple_repeat 2 55 0 1 1726 321 118 0 0 chr5 149562818 149562869 -2974390 + (CA)n Simple_repeat Simple_repeat 1 51 0 1 1726 706 228 0 7 chr5 149562871 149563008 -2974251 - B1_Mur2 SINE Alu -13 136 1 1 1726 323 391 74 38 chr5 149563008 149563375 -2973884 + L1M5 LINE L1 4513 4892 -1254 1 1726 189 121 0 0 chr5 149563481 149563514 -2973745 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1726 374 237 32 21 chr5 149563622 149563717 -2973542 - PB1D10 SINE Alu -1 116 21 1 1726 1867 118 105 6 chr5 149563724 149564039 -2973220 + ORR1B1 LTR MaLR 41 386 -8 1 1726 973 159 43 21 chr5 149564093 149564279 -2972980 - B2_Mm2 SINE B2 -4 191 2 1 1726 771 288 73 53 chr5 149564348 149564744 -2972515 - Lx8 LINE L1 -30 7443 7040 1 1726 588 156 0 0 chr5 149564925 149565015 -2972244 - 5S rRNA rRNA -30 91 2 1 1726 191 308 114 13 chr5 149565130 149565209 -2972050 - MIRb SINE MIR -148 120 34 1 1726 943 254 14 5 chr5 149566045 149566255 -2971004 - B3 SINE B2 -3 213 2 1 1726 303 175 25 34 chr5 149567104 149567222 -2970037 + CT-rich Low_complexity Low_complexity 6 122 0 1 1726 539 241 205 0 chr5 149567928 149568094 -2969165 - B3 SINE B2 -14 202 3 1 1726 242 363 99 31 chr5 149568278 149568440 -2968819 + MIRc SINE MIR 64 236 -32 1 1726 225 0 0 0 chr5 149568537 149568562 -2968697 + (CA)n Simple_repeat Simple_repeat 2 26 0 1 1726 538 277 43 25 chr5 149570483 149570646 -2966613 + MER5A DNA MER1_type 16 181 -8 1 1726 237 236 0 113 chr5 149571663 149571725 -2965534 - MLT1D LTR MaLR -449 56 2 1 1726 288 53 0 0 chr5 149572437 149572475 -2964784 + (CCG)n Simple_repeat Simple_repeat 2 39 0 1 1726 272 305 37 30 chr5 149572498 149572633 -2964626 - RMER15 LTR ERVL -90 485 350 1 1726 3443 35 8 0 chr5 149572659 149573056 -2964203 + MTB LTR MaLR 1 400 0 1 1726 872 158 235 0 chr5 149573099 149573282 -2963977 - URR1A DNA MER1_type 0 226 1 1 1726 189 0 0 0 chr5 149574448 149574469 -2962790 + (CCA)n Simple_repeat Simple_repeat 2 22 0 1 1726 535 211 105 0 chr5 149575216 149575349 -2961910 - B1F1 SINE Alu -2 147 1 1 1726 30 0 0 0 chr5 149575507 149575537 -2961722 + AT_rich Low_complexity Low_complexity 1 30 0 1 1726 290 213 98 0 chr5 149576115 149576176 -2961083 - MLT1J LTR MaLR -338 174 108 1 1726 5361 127 73 8 chr5 149576245 149577144 -2960115 + RMER17B LTR ERVK 1 958 0 1 1726 186 189 0 0 chr5 149577220 149577257 -2960002 + GA-rich Low_complexity Low_complexity 4 40 0 1 1726 240 35 0 0 chr5 149578173 149578202 -2959057 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 1 1726 241 281 28 35 chr5 149578419 149578563 -2958696 + L1MB3 LINE L1 6017 6159 -24 1 1726 495 196 11 0 chr5 149578614 149578706 -2958553 + B3 SINE B2 1 93 -123 1 1726 34 0 0 0 chr5 149578735 149578769 -2958490 + AT_rich Low_complexity Low_complexity 1 34 0 1 1726 1062 180 33 19 chr5 149578863 149579073 -2958186 + B3 SINE B2 2 214 -2 1 1726 462 214 51 0 chr5 149579279 149579377 -2957882 + PB1 SINE Alu 22 124 -3 1 1726 606 143 0 0 chr5 149579411 149579516 -2957743 + (TA)n Simple_repeat Simple_repeat 2 106 0 1 1726 940 265 89 91 chr5 149580568 149580824 -2956435 - MTE2a LTR MaLR -3 376 113 1 1726 918 156 0 0 chr5 149580824 149580959 -2956300 + B1_Mur3 SINE Alu 3 137 -12 1 1726 351 0 0 0 chr5 149580959 149580998 -2956261 + (GA)n Simple_repeat Simple_repeat 2 40 0 1 1726 940 265 89 91 chr5 149580998 149581101 -2956158 - MTE2a LTR MaLR -267 112 18 1 1726 712 353 28 19 chr5 149581331 149581654 -2955605 - MLT1A0 LTR MaLR -1 364 39 1 1726 1491 40 0 22 chr5 149581655 149581836 -2955423 + B2_Mm2 SINE B2 1 177 -18 1 1726 282 74 74 0 chr5 149581843 149581897 -2955362 + B2_Mm2 SINE B2 136 193 -2 1 1726 203 103 26 0 chr5 149582540 149582579 -2954680 + (CCCCCG)n Simple_repeat Simple_repeat 2 41 0 1 1726 633 280 36 67 chr5 149583282 149583336 -2953923 - MLT1C LTR MaLR -9 458 408 1 1726 324 257 0 13 chr5 149583336 149583411 -2953848 - ID2 SINE ID -9 74 1 1 1726 633 280 36 67 chr5 149583411 149583551 -2953708 - MLT1C LTR MaLR -60 407 270 1 1726 1612 172 112 26 chr5 149583722 149584062 -2953197 - ORR1D1 LTR MaLR -5 369 1 1 1726 3210 112 55 85 chr5 149584140 149584371 -2952888 + RMER4B LTR ERVK 1 221 -364 1 1726 675 0 0 0 chr5 149584371 149584446 -2952813 + (TA)n Simple_repeat Simple_repeat 2 76 0 1 1726 3210 112 55 85 chr5 149584446 149584749 -2952510 + RMER4B LTR ERVK 222 525 -60 1 1726 1423 85 0 11 chr5 149584749 149584939 -2952320 + B2_Mm2 SINE B2 2 189 -6 1 1726 3210 112 55 85 chr5 149584939 149585006 -2952253 + RMER4B LTR ERVK 526 584 -1 1 1726 1002 186 134 0 chr5 149585024 149585218 -2952041 - URR1B DNA MER1_type -3 222 3 1 1726 215 328 0 16 chr5 149585283 149585345 -2951914 + ID4_ SINE ID 16 76 -7 1 1726 183 80 0 0 chr5 149587209 149587234 -2950025 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1 1726 1039 206 15 10 chr5 149587244 149587450 -2949809 - B3 SINE B2 -5 211 5 1 1726 408 20 0 0 chr5 149587618 149587667 -2949592 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1726 279 0 0 0 chr5 149587667 149587697 -2949562 + (GA)n Simple_repeat Simple_repeat 2 32 0 1 1726 381 180 35 0 chr5 149587754 149587926 -2949333 + (CA)n Simple_repeat Simple_repeat 2 179 0 1 1726 338 25 0 0 chr5 149587926 149587966 -2949293 + HAL1-3A_ME LINE L1 1979 2018 -840 1 1726 1056 65 51 0 chr5 149588281 149588419 -2948840 + B1_Mus1 SINE Alu 1 145 -3 1 1726 231 36 0 0 chr5 149588419 149588447 -2948812 + (GA)n Simple_repeat Simple_repeat 2 29 0 1 1726 420 357 56 80 chr5 149588447 149588873 -2948386 + L2b LINE L2 2958 3373 -2 1 1726 296 313 142 29 chr5 149589339 149589543 -2947716 - MLT1K LTR MaLR -3 592 366 1 1726 1533 217 45 22 chr5 149589920 149590278 -2946981 - ORR1D2 LTR MaLR -4 366 1 1 1726 502 294 152 19 chr5 149590383 149590640 -2946619 + B4A SINE B4 2 292 0 1 1726 32 0 0 0 chr5 149590834 149590866 -2946393 + AT_rich Low_complexity Low_complexity 1 32 0 1 1726 228 67 0 0 chr5 149590872 149590902 -2946357 + (TA)n Simple_repeat Simple_repeat 1 30 0 1 1726 482 98 12 0 chr5 149590941 149591023 -2946236 + (TA)n Simple_repeat Simple_repeat 1 83 0 1 1726 316 193 0 39 chr5 149591024 149591091 -2946168 - B2_Mm2 SINE B2 -107 109 47 1 1726 650 128 338 0 chr5 149591138 149591271 -2945988 - B2_Mm1t SINE B2 -14 179 2 1 1726 3796 134 72 73 chr5 149592151 149593058 -2944201 - RMER17A2 LTR ERVK 0 906 1 1 1726 518 205 161 23 chr5 149593151 149593281 -2943978 + B3 SINE B2 2 149 -67 1 1726 414 0 0 0 chr5 149593284 149593330 -2943929 + (CA)n Simple_repeat Simple_repeat 1 46 0 1 1726 450 0 0 0 chr5 149593330 149593379 -2943880 + (GA)n Simple_repeat Simple_repeat 2 51 0 1 1726 1444 55 0 11 chr5 149593546 149593728 -2943531 - B2_Mm2 SINE B2 -14 181 2 1 1726 448 244 59 95 chr5 149593834 149593925 -2943334 - RCHARR1 DNA MER1_type -16 958 883 2 1726 1252 61 0 0 chr5 149593925 149594072 -2943187 + B1_Mus2 SINE Alu 1 147 0 2 1726 448 244 59 95 chr5 149594072 149594202 -2943057 - RCHARR1 DNA MER1_type -92 882 745 2 1726 421 224 200 0 chr5 149594206 149594331 -2942928 - ID_B1 SINE B4 -8 216 67 2 1726 2110 240 93 23 chr5 149594366 149594981 -2942278 - RCHARR1 DNA MER1_type -214 760 103 2 1726 372 160 26 39 chr5 149595185 149595263 -2941996 - HAL1-3A_ME LINE L1 -806 2052 1976 2 1726 486 131 0 0 chr5 149595263 149595362 -2941897 + (TCTG)n Simple_repeat Simple_repeat 3 101 0 2 1726 243 294 0 0 chr5 149595426 149595477 -2941782 - RCHARR1 DNA MER1_type -867 107 57 2 1726 437 86 169 33 chr5 149596283 149596398 -2940861 - B2_Mm2 SINE B2 -1 192 49 2 1726 1440 57 17 0 chr5 149596427 149596603 -2940656 - B2_Mm2 SINE B2 -14 181 3 2 1726 2052 106 32 13 chr5 149596959 149597274 -2939985 - ORR1A4 LTR MaLR -8 321 1 2 1726 244 346 10 0 chr5 149597755 149597858 -2939401 + MER2 DNA MER2_type 121 224 -121 2 1726 636 212 7 35 chr5 149597858 149598000 -2939259 + RSINE1 SINE B4 2 139 -26 2 1726 449 151 318 0 chr5 149598657 149598783 -2938476 + URR1A DNA MER1_type 1 166 -60 2 1726 284 37 36 36 chr5 149599018 149599074 -2938185 + (GGGAGA)n Simple_repeat Simple_repeat 5 60 0 2 1726 471 111 14 14 chr5 149599255 149599328 -2937931 + URR1A DNA MER1_type 153 225 -1 2 1726 279 79 0 0 chr5 149600896 149600934 -2936325 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 2 1726 1028 168 92 26 chr5 149601459 149601654 -2935605 + B3 SINE B2 5 212 -4 2 1726 1961 128 44 6 chr5 149601908 149602223 -2935036 - ORR1A4 LTR MaLR -2 327 1 2 1726 860 156 15 0 chr5 149602231 149602366 -2934893 + B1_Mur1 SINE Alu 3 139 -10 2 1726 489 138 0 0 chr5 149602420 149602500 -2934759 + (GGA)n Simple_repeat Simple_repeat 3 82 0 2 1726 325 315 137 51 chr5 149603992 149604226 -2933033 - LTR33 LTR ERVL -4 511 258 2 1726 849 216 119 0 chr5 149606645 149606959 -2930300 - MTD LTR MaLR -3 416 42 2 1726 291 270 0 0 chr5 149607243 149607306 -2929953 - ID4_ SINE ID -10 73 11 2 1726 238 303 26 0 chr5 149608342 149608418 -2928841 + L3 LINE CR1 3489 3566 -923 2 1726 468 264 27 0 chr5 149609349 149609459 -2927800 + MLT1D LTR MaLR 278 390 -115 2 1726 232 293 23 58 chr5 149611279 149611366 -2925893 + BC1_Mm scRNA scRNA 16 99 -53 2 1726 383 237 0 17 chr5 149611371 149611491 -2925768 + GA-rich Low_complexity Low_complexity 3 120 0 2 1726 251 259 17 51 chr5 149611617 149611735 -2925524 + L1ME5 LINE L1 6059 6172 -22 2 1726 584 196 374 9 chr5 149612111 149612233 -2925026 + MTD LTR MaLR 7 195 -224 2 1726 420 111 0 0 chr5 149612233 149612296 -2924963 + (TA)n Simple_repeat Simple_repeat 2 64 0 2 1726 584 196 374 9 chr5 149612296 149612400 -2924859 + MTD LTR MaLR 196 315 -104 2 1726 315 333 0 0 chr5 149612474 149612564 -2924695 + MIRb SINE MIR 68 157 -111 2 1726 3282 63 2 0 chr5 149612809 149613208 -2924051 - MTB LTR MaLR 0 400 1 2 1726 504 130 40 80 chr5 149613509 149613609 -2923650 + B1_Mur1 SINE Alu 54 149 0 2 1726 464 226 39 0 chr5 149613762 149613864 -2923395 - PB1D10 SINE Alu -10 107 2 2 1726 198 0 0 0 chr5 149614703 149614725 -2922534 + (CCCA)n Simple_repeat Simple_repeat 2 23 0 2 1726 612 101 0 0 chr5 149615666 149615755 -2921504 + (CCCTG)n Simple_repeat Simple_repeat 2 90 0 2 1726 744 216 110 30 chr5 149616444 149616644 -2920615 - B3 SINE B2 0 216 1 2 1726 300 223 135 21 chr5 149617581 149617677 -2919582 - MER2 DNA MER2_type -152 193 87 2 1726 1517 174 319 19 chr5 149617862 149618272 -2918987 + MT2A LTR ERVL 1 533 0 2 1726 998 165 29 128 chr5 149618791 149619034 -2918225 - URR1A DNA MER1_type -7 219 1 2 1726 1109 200 14 14 chr5 149619302 149619515 -2917744 - B3 SINE B2 -2 214 2 2 1726 233 70 34 34 chr5 149619696 149619755 -2917504 + (TTTTG)n Simple_repeat Simple_repeat 4 62 0 2 1726 213 65 0 0 chr5 149619785 149619816 -2917443 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 2 1726 898 138 0 0 chr5 149619820 149619950 -2917309 - B1_Mur3 SINE Alu -19 130 1 2 1726 585 42 0 0 chr5 149620379 149620451 -2916808 + (TCCC)n Simple_repeat Simple_repeat 2 73 0 2 1726 888 254 182 40 chr5 149621864 149622216 -2915043 + MTD LTR MaLR 18 419 0 2 1726 261 256 50 25 chr5 149622229 149622309 -2914950 + ORR1D2 LTR MaLR 289 370 0 2 1726 272 244 60 24 chr5 149622918 149623002 -2914257 + PB1D7 SINE Alu 29 115 -34 2 1726 297 286 103 67 chr5 149623786 149623951 -2913308 + ORR1E LTR MaLR 21 191 -168 2 1726 246 299 53 70 chr5 149623968 149624155 -2913104 + ORR1E LTR MaLR 202 410 -9 2 1726 2482 75 3 0 chr5 149625246 149625565 -2911694 - ORR1A2 LTR MaLR -7 320 1 2 1726 434 336 63 93 chr5 149625879 149626276 -2910983 + MLT1A1 LTR MaLR 22 406 -2 2 1726 1115 178 52 0 chr5 149626674 149626887 -2910372 + URR1A DNA MER1_type 1 224 -2 2 1726 858 144 7 41 chr5 149627287 149627324 -2909935 - B1_Mus1 SINE Alu -3 145 114 2 1726 3236 60 2 0 chr5 149627324 149627723 -2909536 - MTB LTR MaLR 0 400 1 2 1726 858 144 7 41 chr5 149627723 149627830 -2909429 - B1_Mus1 SINE Alu -35 113 6 2 1726 414 0 0 0 chr5 149629771 149629817 -2907442 + (TG)n Simple_repeat Simple_repeat 2 47 0 2 1726 2663 126 45 56 chr5 149630059 149630574 -2906685 - RLTR28 LTR ERVL -15 509 1 2 1726 949 89 0 0 chr5 149630711 149630834 -2906425 + B1_Mus1 SINE Alu 9 131 -17 2 1726 222 37 0 0 chr5 149630836 149630863 -2906396 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2 1726 528 225 91 8 chr5 149630919 149631040 -2906219 - B1F1 SINE Alu 0 149 19 2 1726 470 351 105 54 chr5 149631280 149631614 -2905645 + MLT1A0 LTR MaLR 3 353 -12 2 1726 206 143 0 28 chr5 149632004 149632040 -2905219 + CT-rich Low_complexity Low_complexity 4 38 0 2 1726 252 293 40 60 chr5 149632040 149632189 -2905070 - MER5B DNA MER1_type 0 178 33 2 1726 225 312 95 21 chr5 149632907 149632997 -2904262 + MLT1C LTR MaLR 1 97 -370 2 1726 366 212 111 83 chr5 149632997 149633105 -2904154 + PB1D9 SINE Alu 1 111 -9 2 1726 228 29 0 167 chr5 149633074 149633116 -2904143 + B1_Mus2 SINE Alu 108 142 -5 2 1726 3010 53 2 111 chr5 149633530 149633729 -2903530 + MTB LTR MaLR 1 196 -204 2 1726 817 97 199 14 chr5 149633729 149633875 -2903384 + B2_Mm2 SINE B2 4 176 -19 2 1726 3010 53 2 111 chr5 149633875 149634124 -2903135 + MTB LTR MaLR 197 400 0 2 1726 553 299 150 0 chr5 149634873 149635040 -2902219 + B4 SINE B4 101 292 0 2 1726 700 240 13 33 chr5 149635049 149635200 -2902059 - B3 SINE B2 -68 148 1 2 1726 536 291 37 0 chr5 149635216 149635350 -2901909 - B1_Mur3 SINE Alu -5 144 6 2 1726 437 236 160 16 chr5 149635353 149635478 -2901781 - MER2 DNA MER2_type -121 224 82 2 1726 833 290 18 22 chr5 149636182 149636456 -2900803 + B4 SINE B4 38 276 -16 2 1726 303 28 0 0 chr5 149636622 149636658 -2900601 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 1726 21 36 0 0 chr5 149637124 149637152 -2900107 + AT_rich Low_complexity Low_complexity 1 28 0 2 1726 448 281 153 60 chr5 149638466 149638734 -2898525 + B4 SINE B4 8 292 0 2 1726 1158 160 48 19 chr5 149638752 149638962 -2898297 - B3 SINE B2 0 216 1 2 1726 513 304 92 29 chr5 149638989 149639196 -2898063 + Tigger7 DNA MER2_type 2256 2475 -16 2 1726 237 231 62 0 chr5 149639799 149639864 -2897395 + MIR SINE MIR 124 192 -70 2 1726 433 321 50 30 chr5 149640166 149640221 -2897038 - MT2A LTR ERVL -328 205 3 2 1726 515 278 35 0 chr5 149640221 149640365 -2896894 - MTEb LTR MaLR -228 151 3 2 1726 1964 163 197 58 chr5 149640490 149640952 -2896307 - RMER19B LTR ERVK -376 526 1 2 1726 688 240 80 32 chr5 149641624 149641839 -2895420 + MTD LTR MaLR 186 405 -14 2 1726 216 0 0 0 chr5 149642435 149642459 -2894800 + (T)n Simple_repeat Simple_repeat 1 24 0 2 1726 310 314 30 48 chr5 149643130 149643297 -2893962 - Tigger15a DNA TcMar -1 714 551 2 1726 287 323 230 14 chr5 149643524 149643942 -2893317 + L2 LINE L2 2260 2767 -652 2 1726 189 0 0 0 chr5 149644268 149644289 -2892970 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 1726 203 125 25 0 chr5 149644289 149644329 -2892930 + (GA)n Simple_repeat Simple_repeat 2 42 0 2 1726 412 200 60 100 chr5 149644329 149644426 -2892833 - MT2A LTR ERVL -107 494 327 2 1726 607 153 123 26 chr5 149644426 149644471 -2892788 - RMER10B LTR ERVL 0 398 354 2 1726 482 58 29 0 chr5 149644471 149644540 -2892719 + (TATG)n Simple_repeat Simple_repeat 1 71 0 2 1726 607 153 123 26 chr5 149644540 149644608 -2892651 - RMER10B LTR ERVL -45 353 276 2 1726 426 16 48 0 chr5 149644660 149644723 -2892536 + (TC)n Simple_repeat Simple_repeat 2 67 0 2 1726 417 103 0 0 chr5 149644723 149644791 -2892468 + (CA)n Simple_repeat Simple_repeat 1 68 0 2 1726 507 17 0 0 chr5 149644875 149644935 -2892324 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 2 1726 414 286 82 17 chr5 149644936 149645288 -2891971 + L1M4 LINE L1 3141 3515 -2631 2 1726 405 0 0 0 chr5 149645353 149645398 -2891861 + (TC)n Simple_repeat Simple_repeat 2 46 0 2 1726 224 297 52 39 chr5 149645755 149645832 -2891427 - L2b LINE L2 -57 3318 3241 2 1726 457 179 0 26 chr5 149646015 149646130 -2891129 + CT-rich Low_complexity Low_complexity 3 114 0 2 1726 240 302 87 120 chr5 149646390 149646553 -2890706 + RLTR22_Mur LTR ERVK 1428 1583 -265 2 1726 375 23 0 0 chr5 149646553 149646597 -2890662 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 1726 240 302 87 120 chr5 149646597 149646708 -2890551 + RLTR22_Mur LTR ERVK 1584 1693 -155 2 1726 315 49 32 32 chr5 149647002 149647065 -2890194 + (TTTTG)n Simple_repeat Simple_repeat 2 64 0 2 1726 836 117 202 0 chr5 149647086 149647249 -2890010 - Lx3B LINE L1 0 6973 6778 2 1726 228 253 0 0 chr5 149648342 149648417 -2888842 + (CA)n Simple_repeat Simple_repeat 1 75 0 2 1726 431 186 70 0 chr5 149648568 149648654 -2888605 - PB1D10 SINE Alu -1 116 25 2 1726 776 210 21 59 chr5 149648658 149648845 -2888414 + MTD LTR MaLR 1 180 -239 3 1726 243 149 43 0 chr5 149648947 149648994 -2888265 + MTD LTR MaLR 371 419 0 3 1726 1006 250 129 71 chr5 149649196 149649533 -2887726 + MTD LTR MaLR 19 381 -38 3 1726 2329 129 73 16 chr5 149649533 149649918 -2887341 + MTB_Mm LTR MaLR 1 407 0 3 1726 1006 250 129 71 chr5 149649918 149649959 -2887300 + MTD LTR MaLR 382 419 0 3 1726 342 0 0 0 chr5 149650310 149650348 -2886911 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1726 796 206 209 26 chr5 149650376 149650610 -2886649 + B4A SINE B4 14 290 -2 3 1726 195 42 0 0 chr5 149650632 149650656 -2886603 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3 1726 316 301 59 125 chr5 149650765 149650820 -2886439 - B1F1 SINE Alu -7 142 103 3 1726 396 125 0 0 chr5 149650820 149650884 -2886375 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 1726 386 271 94 0 chr5 149650884 149650980 -2886279 - PB1D7 SINE Alu -15 105 1 3 1726 664 286 24 71 chr5 149650980 149651188 -2886071 + B3 SINE B2 19 216 0 3 1726 180 0 0 0 chr5 149651776 149651796 -2885463 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3 1726 1742 209 54 60 chr5 149651803 149651846 -2885413 - RLTR11A LTR ERVK -27 501 460 3 1726 420 20 0 0 chr5 149651846 149651895 -2885364 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1726 1376 77 16 16 chr5 149651905 149652091 -2885168 - B2_Mm2 SINE B2 -9 186 1 3 1726 1742 209 54 60 chr5 149652091 149652328 -2884931 - RLTR11A LTR ERVK -78 450 220 3 1726 540 0 0 0 chr5 149652328 149652388 -2884871 + (TC)n Simple_repeat Simple_repeat 1 60 0 3 1726 1742 209 54 60 chr5 149652388 149652593 -2884666 - RLTR11A LTR ERVK -309 219 7 3 1726 332 336 44 0 chr5 149652914 149653027 -2884232 - PB1 SINE Alu -9 118 1 3 1726 750 167 0 40 chr5 149653042 149653167 -2884092 + B1F2 SINE Alu 29 148 -1 3 1726 182 260 20 20 chr5 149653240 149653291 -2883968 + L2 LINE L2 441 491 -2928 3 1726 496 127 0 0 chr5 149653569 149653640 -2883619 - B1_Mur4 SINE Alu 0 150 80 3 1726 1945 224 22 37 chr5 149653679 149654142 -2883117 + RMER19C LTR ERVK 138 593 -18 3 1726 758 85 7 0 chr5 149654143 149654252 -2883007 + B2_Mm2 SINE B2 2 116 -100 3 1726 308 204 0 0 chr5 149654369 149654423 -2882836 - PB1D9 SINE Alu -45 75 22 3 1726 1190 108 0 0 chr5 149654421 149654587 -2882672 + B2_Mm2 SINE B2 7 172 -23 3 1726 1567 233 51 3 chr5 149656401 149656754 -2880505 - ORR1D2 LTR MaLR 0 370 1 3 1726 997 78 0 0 chr5 149656983 149657112 -2880147 + B1_Mur4 SINE Alu 17 145 -5 3 1726 315 0 0 0 chr5 149657126 149657161 -2880098 + (CATA)n Simple_repeat Simple_repeat 2 36 0 3 1726 355 164 66 0 chr5 149657549 149657610 -2879649 - URR1B DNA MER1_type 0 225 161 3 1726 2353 141 26 16 chr5 149657616 149657998 -2879261 - ORR1B1 LTR MaLR -8 386 1 3 1726 836 159 124 0 chr5 149657998 149658143 -2879116 - URR1B DNA MER1_type -63 162 1 3 1726 334 273 0 134 chr5 149658195 149658216 -2879043 + MT2B LTR ERVL 150 153 -448 3 1726 772 232 0 7 chr5 149658216 149658355 -2878904 + B1_Mur1 SINE Alu 2 139 -10 3 1726 254 307 64 28 chr5 149658360 149658501 -2878758 - MIR SINE MIR -109 153 8 3 1726 580 255 186 68 chr5 149658749 149659060 -2878199 + ORR1E LTR MaLR 1 348 -11 3 1726 292 167 0 0 chr5 149660336 149660384 -2876875 + B3 SINE B2 1 48 -168 3 1726 841 243 45 17 chr5 149660385 149660561 -2876698 - B3A SINE B2 -15 183 3 3 1726 1040 51 36 0 chr5 149660609 149660747 -2876512 + B2_Mm1t SINE B2 37 179 -14 3 1726 432 65 0 57 chr5 149660779 149660889 -2876370 + B2_Mm2 SINE B2 47 186 -9 3 1726 3479 136 128 53 chr5 149660989 149661674 -2875585 - RMER19A LTR ERVK 0 737 1 3 1726 2187 128 0 24 chr5 149661720 149662055 -2875204 - ORR1A2 LTR MaLR 0 327 1 3 1726 596 224 75 25 chr5 149662355 149662495 -2874764 + ORR1E LTR MaLR 3 150 -209 3 1726 2523 87 170 19 chr5 149662495 149662907 -2874352 + MT2B LTR ERVL 1 474 -127 3 1726 368 292 92 33 chr5 149663144 149663328 -2873931 + RMER2 LTR ERV1 373 567 0 3 1726 1133 158 36 22 chr5 149663328 149663499 -2873760 + MT2B LTR ERVL 352 601 0 3 1726 350 244 35 0 chr5 149663544 149663630 -2873629 + ORR1E LTR MaLR 284 372 -7 3 1726 827 94 0 0 chr5 149663868 149663985 -2873274 - URR1B DNA MER1_type 0 225 109 3 1726 289 167 212 12 chr5 149664012 149664032 -2873227 - URR1B DNA MER1_type -81 144 123 3 1726 1194 34 14 7 chr5 149664032 149664178 -2873081 - B1_Mus1 SINE Alu 0 148 2 3 1726 289 167 212 12 chr5 149664178 149664242 -2873017 - URR1B DNA MER1_type -103 122 43 3 1726 288 0 0 0 chr5 149664960 149664992 -2872267 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 3 1726 429 20 0 0 chr5 149665101 149665151 -2872108 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 1726 185 281 140 37 chr5 149666198 149666305 -2870954 - MIRb SINE MIR -104 164 47 3 1726 296 247 82 51 chr5 149666521 149666619 -2870640 - L2a LINE L2 0 3426 3326 3 1726 503 281 138 0 chr5 149667121 149667281 -2869978 + B4 SINE B4 111 292 0 3 1726 309 100 0 0 chr5 149667321 149667371 -2869888 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1726 186 43 0 0 chr5 149667373 149667396 -2869863 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 1726 622 219 39 0 chr5 149667436 149667564 -2869695 + B3 SINE B2 84 216 0 3 1726 1949 104 108 0 chr5 149667747 149668044 -2869215 + ORR1A4 LTR MaLR 1 329 0 3 1726 1126 175 20 15 chr5 149668675 149668872 -2868387 + B3 SINE B2 18 215 -1 3 1726 2457 74 3 55 chr5 149668949 149669294 -2867965 - ORR1A2 LTR MaLR 0 327 1 3 1726 699 103 0 0 chr5 149669764 149669861 -2867398 - B1_Mus2 SINE Alu -2 145 49 3 1726 345 250 29 98 chr5 149669797 149669899 -2867360 - MT2B LTR ERVL -337 264 170 3 1726 3349 48 2 0 chr5 149670521 149670916 -2866343 - MTA_Mm LTR MaLR 0 396 1 3 1726 1461 146 11 17 chr5 149671410 149671669 -2865590 + ORR1B2 LTR MaLR 1 273 -86 3 1726 191 156 69 111 chr5 149671815 149671887 -2865372 + L2b LINE L2 3231 3299 -76 3 1726 702 308 98 4 chr5 149672015 149672292 -2864967 + LTR84b LTR ERVL 22 324 -437 3 1726 2968 58 42 5 chr5 149672851 149673233 -2864026 - MTA_Mm LTR MaLR 0 396 1 3 1726 370 300 53 23 chr5 149673335 149673468 -2863791 - MIR SINE MIR -94 168 32 3 1726 1133 187 5 28 chr5 149673936 149674151 -2863108 + B3 SINE B2 2 211 -5 3 1726 472 259 139 112 chr5 149674764 149675051 -2862208 + Charlie7 DNA MER1_type 1822 2116 -496 3 1726 404 288 62 35 chr5 149675762 149675906 -2861353 - B1F1 SINE Alu -1 148 1 3 1726 202 68 68 0 chr5 149676196 149676240 -2861019 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3 1726 520 237 183 26 chr5 149677095 149677286 -2859973 - ID_B1 SINE B4 -3 221 1 3 1726 781 301 22 44 chr5 149677641 149677912 -2859347 - MER121 Unknown Unknown -140 272 8 3 1726 1255 257 26 138 chr5 149679669 149680089 -2857170 - MTE2b LTR MaLR 0 379 7 3 1726 924 236 10 5 chr5 149680434 149680626 -2856633 + B3 SINE B2 12 204 -12 3 1726 1019 278 96 65 chr5 149680641 149681268 -2855991 + L1MC2 LINE L1 5374 6019 -325 3 1726 299 270 108 23 chr5 149681345 149681474 -2855785 + L1MC2 LINE L1 6012 6151 -193 3 1726 269 269 90 25 chr5 149681490 149681612 -2855647 + L1MC2 LINE L1 6205 6334 -10 3 1726 542 138 136 9 chr5 149682373 149682483 -2854776 + B1_Mur1 SINE Alu 18 141 -8 3 1726 1388 76 27 0 chr5 149682523 149682708 -2854551 - B2_Mm1t SINE B2 -3 190 1 3 1726 225 324 9 18 chr5 149682848 149682958 -2854301 + GA-rich Low_complexity Low_complexity 1 109 0 3 1726 210 71 0 0 chr5 149683839 149683867 -2853392 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 1727 636 92 18 18 chr5 149685296 149685407 -2851852 + (TTCC)n Simple_repeat Simple_repeat 3 113 0 3 1727 248 231 0 37 chr5 149685445 149685499 -2851760 - PB1 SINE Alu -3 124 73 3 1727 351 0 0 0 chr5 149685500 149685539 -2851720 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 1727 245 250 0 0 chr5 149685539 149685595 -2851664 - L1_Rod LINE L1 -136 5711 5656 3 1727 222 221 165 25 chr5 149685655 149685734 -2851525 + PB1D10 SINE Alu 27 116 -1 3 1727 1547 239 91 46 chr5 149685833 149686272 -2850987 - RLTR28B LTR ERVL -1 480 22 3 1727 1049 179 30 5 chr5 149686737 149686934 -2850325 + B3 SINE B2 1 202 -14 3 1727 3022 21 0 0 chr5 149688073 149688405 -2848854 - IAPEY3_LTR LTR ERVK 0 332 1 3 1727 1081 220 46 29 chr5 149688453 149688681 -2848578 + B4 SINE B4 4 235 -57 3 1727 441 269 131 0 chr5 149688681 149688811 -2848448 + B1_Mur2 SINE Alu 2 148 -1 3 1727 270 0 0 0 chr5 149688950 149688980 -2848279 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 1727 287 268 46 11 chr5 149689852 149689939 -2847320 + PB1D10 SINE Alu 21 110 -7 3 1727 429 243 211 11 chr5 149690043 149690218 -2847041 - Lx9 LINE L1 -217 7427 7218 3 1727 42 0 0 0 chr5 149690248 149690290 -2846969 + AT_rich Low_complexity Low_complexity 1 42 0 3 1727 894 211 40 10 chr5 149690857 149691058 -2846201 + B3 SINE B2 1 207 -9 3 1727 438 20 0 0 chr5 149691521 149691572 -2845687 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 1727 651 288 49 21 chr5 149692300 149692584 -2844675 + B4A SINE B4 1 292 0 3 1727 304 264 0 14 chr5 149692703 149692776 -2844483 + MLT1B LTR MaLR 24 95 -295 3 1727 870 162 6 11 chr5 149692776 149692957 -2844302 + CT-rich Low_complexity Low_complexity 1 180 0 3 1727 391 204 0 28 chr5 149692949 149693055 -2844204 + T-rich Low_complexity Low_complexity 1 103 0 3 1727 216 228 0 0 chr5 149693049 149693106 -2844153 + C-rich Low_complexity Low_complexity 1 57 0 3 1727 654 144 19 0 chr5 149693152 149693256 -2844003 - B2_Mm2 SINE B2 -88 107 2 3 1727 568 275 64 23 chr5 149693281 149693452 -2843807 + MLT1B LTR MaLR 116 293 -97 3 1727 238 200 38 143 chr5 149693526 149693631 -2843628 + RMER21A LTR ERV1 208 301 -646 3 1727 274 43 0 60 chr5 149694088 149694138 -2843121 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3 1727 291 246 106 6 chr5 149694157 149694281 -2842978 + MLT1B LTR MaLR 205 360 -30 3 1727 843 227 26 5 chr5 149695336 149695531 -2841728 - B3 SINE B2 -17 199 1 4 1727 308 260 91 67 chr5 149695588 149695674 -2841585 + L1M2 LINE L1 3003 3091 -3052 4 1727 1524 63 16 0 chr5 149695674 149695865 -2841394 + B2_Mm2 SINE B2 1 194 -1 4 1727 1219 48 7 0 chr5 149695866 149696013 -2841246 + B1_Mus1 SINE Alu 1 148 0 4 1727 308 260 91 67 chr5 149696013 149696089 -2841170 + L1M2 LINE L1 3092 3171 -2972 4 1727 286 291 108 16 chr5 149696154 149696283 -2840976 - MLT1F LTR MaLR -13 547 407 4 1727 357 249 3 7 chr5 149696363 149696455 -2840804 + B3 SINE B2 43 134 -59 4 1727 390 319 17 46 chr5 149696448 149696622 -2840637 + MLT2D LTR ERVL 154 322 -92 4 1727 570 311 50 50 chr5 149696619 149696880 -2840379 - MTD LTR MaLR -158 261 1 4 1727 404 265 144 26 chr5 149696894 149697116 -2840143 - MLT1F LTR MaLR -219 360 162 4 1727 200 193 161 46 chr5 149697936 149698023 -2839236 + MIRc SINE MIR 42 138 -130 4 1727 237 195 184 0 chr5 149698205 149698292 -2838967 - L1M5 LINE L1 -2813 3333 3231 4 1727 1265 98 16 16 chr5 149698428 149698614 -2838645 - B2_Mm2 SINE B2 -5 190 5 4 1727 234 294 107 5 chr5 149698670 149698875 -2838384 - L1M5 LINE L1 -3166 2980 2755 4 1727 492 311 142 49 chr5 149698877 149699483 -2837776 + L1ME2 LINE L1 4879 5607 -752 4 1727 248 233 33 22 chr5 149699514 149699606 -2837653 + L1ME2 LINE L1 5589 5681 -483 4 1727 296 327 71 24 chr5 149699776 149699945 -2837314 + L1ME2 LINE L1 5988 6164 0 4 1727 1123 76 0 7 chr5 149700229 149700365 -2836894 + B1_Mus2 SINE Alu 2 137 -10 4 1727 285 51 0 0 chr5 149700365 149700404 -2836855 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 4 1727 781 169 7 34 chr5 149701027 149701174 -2836085 + B1_Mur1 SINE Alu 5 147 -2 4 1727 1624 163 128 18 chr5 149701632 149701969 -2835290 + ORR1D1 LTR MaLR 1 374 0 4 1727 419 256 51 8 chr5 149702314 149702432 -2834827 - Charlie1b DNA MER1_type -7 516 394 4 1727 241 188 188 0 chr5 149702432 149702496 -2834763 + ID4 SINE ID 3 78 -5 4 1727 519 144 0 0 chr5 149702502 149702613 -2834646 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 4 1727 469 305 109 24 chr5 149702614 149702979 -2834280 - Charlie1b DNA MER1_type -120 403 5 4 1727 569 174 136 32 chr5 149703574 149703699 -2833560 - B1_Mur1 SINE Alu -8 141 4 4 1727 1068 90 7 0 chr5 149704411 149704555 -2832704 + B1_Mus2 SINE Alu 2 146 -1 4 1727 629 230 33 7 chr5 149704760 149704913 -2832346 + B3A SINE B2 1 157 -41 4 1727 227 54 0 26 chr5 149704931 149704969 -2832290 + (CA)n Simple_repeat Simple_repeat 2 38 0 4 1727 315 254 14 40 chr5 149705993 149706067 -2831192 - ID4_ SINE ID -4 79 8 4 1727 257 295 62 104 chr5 149706401 149706545 -2830714 - RLTR25A LTR ERVK -444 659 522 4 1727 465 154 209 9 chr5 149706462 149706567 -2830692 - B1_Mur3 SINE Alu -21 128 3 4 1727 202 347 40 10 chr5 149708940 149709039 -2828220 + L3 LINE CR1 4248 4349 -140 4 1727 245 75 0 24 chr5 149709192 149709233 -2828026 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 4 1727 422 285 90 37 chr5 149709309 149709349 -2827910 - B2_Mm2 SINE B2 -22 171 130 4 1727 426 20 0 0 chr5 149709349 149709400 -2827859 + (TG)n Simple_repeat Simple_repeat 2 52 0 4 1727 601 167 174 8 chr5 149709400 149709521 -2827738 - B3A SINE B2 -57 141 1 4 1727 346 245 64 28 chr5 149710003 149710112 -2827147 - L2a LINE L2 -3 3423 3311 4 1727 264 331 97 55 chr5 149710699 149710838 -2826421 + L1ME3A LINE L1 5507 5639 -534 4 1727 2178 159 201 33 chr5 149710838 149711359 -2825900 + RMER19C LTR ERVK 3 611 0 4 1727 264 331 97 55 chr5 149711359 149711599 -2825660 + L1ME3A LINE L1 5640 5902 -271 4 1727 246 288 0 0 chr5 149711855 149711914 -2825345 + MER63D DNA AcHobo 29 87 -974 4 1727 927 183 0 0 chr5 149711946 149712126 -2825133 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 1727 743 242 140 9 chr5 149712149 149712370 -2824889 + B4A SINE B4 43 292 0 4 1727 259 333 58 0 chr5 149713605 149713692 -2823567 + MLT1A0 LTR MaLR 4 95 -270 4 1727 443 207 69 0 chr5 149713860 149713947 -2823312 - PB1D7 SINE Alu -5 115 23 4 1727 23 0 0 0 chr5 149714314 149714337 -2822922 + AT_rich Low_complexity Low_complexity 1 23 0 4 1727 477 245 10 10 chr5 149714778 149714902 -2822357 - B1_Mur2 SINE Alu 0 120 2 4 1727 310 271 75 30 chr5 149716293 149716426 -2820833 + RLTR25B LTR ERVK 371 509 -519 4 1727 953 41 8 0 chr5 149716346 149716467 -2820792 + B1_Mm SINE Alu 25 146 -1 4 1727 414 329 6 12 chr5 149717518 149717678 -2819581 - Lx8 LINE L1 -294 7179 7021 4 1727 722 293 119 63 chr5 149717912 149718247 -2819012 + ORR1E LTR MaLR 1 354 -5 4 1727 257 260 0 40 chr5 149718621 149718636 -2818623 + B4 SINE B4 72 144 -148 4 1727 341 119 16 33 chr5 149718636 149718697 -2818562 + B1_Mur4 SINE Alu 1 60 -90 4 1727 207 23 20 132 chr5 149718700 149718897 -2818362 + GA-rich Low_complexity Low_complexity 3 177 0 4 1727 225 171 81 47 chr5 149718933 149719019 -2818240 + RLTR25B LTR ERVK 397 485 -543 4 1727 632 157 39 0 chr5 149718977 149719079 -2818180 + B1_Mus2 SINE Alu 42 147 0 4 1727 271 301 24 0 chr5 149719159 149719242 -2818017 + BC1_Mm scRNA scRNA 5 89 -63 4 1727 249 284 91 0 chr5 149720430 149720518 -2816741 - MIRm SINE MIR -1 275 180 4 1727 1082 150 119 0 chr5 149721488 149721681 -2815578 + B3 SINE B2 1 216 0 4 1727 346 313 17 42 chr5 149722252 149722372 -2814887 + PB1D10 SINE Alu 1 117 0 4 1727 3082 236 75 52 chr5 149722712 149723582 -2813677 + RMER19B LTR ERVK 1 890 -12 4 1727 631 295 46 21 chr5 149724352 149724546 -2812713 - B4A SINE B4 -89 203 5 4 1727 1284 163 9 38 chr5 149724751 149724962 -2812297 + B3 SINE B2 1 205 -11 4 1727 722 314 81 8 chr5 149724972 149725357 -2811902 + L1MB1 LINE L1 5595 6007 -182 4 1727 474 220 27 18 chr5 149725359 149725470 -2811789 - MLT1A1 LTR MaLR -2 406 295 4 1727 416 321 15 31 chr5 149725601 149726044 -2811215 + HAL1-2a_MD LINE L1 2326 2518 -506 4 1727 243 336 73 18 chr5 149726064 149726173 -2811086 - MLT1A1 LTR MaLR -250 115 1 4 1727 386 247 208 25 chr5 149726194 149726435 -2810824 + L1MA9 LINE L1 6028 6312 0 4 1727 745 0 42 0 chr5 149726688 149726783 -2810476 + (GGGA)n Simple_repeat Simple_repeat 4 102 0 4 1727 21 36 0 0 chr5 149727392 149727420 -2809839 + AT_rich Low_complexity Low_complexity 1 28 0 4 1727 925 131 27 27 chr5 149728786 149728935 -2808324 + B1_Mur4 SINE Alu 2 150 0 4 1727 224 211 0 0 chr5 149729258 149729296 -2807963 + (TG)n Simple_repeat Simple_repeat 2 39 0 4 1727 400 197 18 65 chr5 149729391 149729517 -2807742 + B1F SINE Alu 1 149 0 4 1727 208 398 0 0 chr5 149731680 149731851 -2805408 + (TAGG)n Simple_repeat Simple_repeat 4 174 0 4 1727 224 384 0 0 chr5 149732199 149732371 -2804888 + (TAAG)n Simple_repeat Simple_repeat 3 174 0 4 1727 257 390 0 0 chr5 149732294 149732471 -2804788 + (TAGG)n Simple_repeat Simple_repeat 2 178 0 4 1727 207 385 0 0 chr5 149732419 149732585 -2804674 + (TAAG)n Simple_repeat Simple_repeat 3 168 0 4 1727 1070 52 81 0 chr5 149733341 149733477 -2803782 - B1_Mus2 SINE Alu 0 147 1 4 1727 233 261 15 0 chr5 149734213 149734278 -2802981 + (CA)n Simple_repeat Simple_repeat 1 66 0 4 1727 303 370 0 0 chr5 149734318 149734410 -2802849 + MTEb LTR MaLR 52 143 -236 4 1727 3794 298 158 37 chr5 149734690 149734799 -2802460 - Cheshire DNA MER1_type 0 2420 2305 4 1727 905 157 0 13 chr5 149734799 149734948 -2802311 + B1_Mur3 SINE Alu 2 148 -1 4 1727 3794 298 158 37 chr5 149734948 149736971 -2800288 - Cheshire DNA MER1_type -116 2304 30 4 1727 1669 152 178 0 chr5 149737046 149737359 -2799900 - RMER4B LTR ERVK 0 585 217 4 1727 1938 176 15 63 chr5 149737359 149737753 -2799506 - ORR1B1 LTR MaLR 0 394 20 4 1727 251 170 21 0 chr5 149737739 149737786 -2799473 - RMER4B LTR ERVK -365 220 173 4 1727 878 285 16 43 chr5 149737798 149738088 -2799171 - B4 SINE B4 -65 227 1 4 1727 2122 136 95 36 chr5 149738687 149739075 -2798184 - RMER4B LTR ERVK -174 411 1 4 1727 436 207 136 17 chr5 149739104 149739222 -2798037 + B1_Mur1 SINE Alu 18 149 0 4 1727 313 315 30 61 chr5 149739226 149739358 -2797901 + L1MD LINE L1 3142 3269 -2877 4 1727 191 278 96 61 chr5 149741022 149741137 -2796122 + MIRm SINE MIR 32 150 -126 4 1727 1301 27 0 0 chr5 149741251 149741398 -2795861 + B1_Mm SINE Alu 1 147 0 4 1727 243 0 0 0 chr5 149741398 149741425 -2795834 + (A)n Simple_repeat Simple_repeat 1 27 0 4 1727 1193 41 0 26 chr5 149741505 149741656 -2795603 + B1_Mus1 SINE Alu 2 148 0 4 1727 233 231 15 0 chr5 149741703 149741768 -2795491 + L1ME3A LINE L1 6090 6155 -18 4 1727 476 187 185 54 chr5 149741803 149741933 -2795326 + B1_Mm SINE Alu 1 147 0 4 1727 760 269 24 53 chr5 149741953 149742161 -2795098 + ID_B1 SINE B4 2 203 -21 4 1727 457 252 18 36 chr5 149742198 149742309 -2794950 + PB1D7 SINE Alu 4 112 -8 4 1727 344 314 72 11 chr5 149742352 149742529 -2794730 - LTR85b LTR Gypsy? -37 747 532 4 1727 332 350 49 0 chr5 149742839 149742962 -2794297 - MamSINE1 SINE tRNA -66 224 96 4 1727 1770 161 66 41 chr5 149743246 149743609 -2793650 - ORR1D1 LTR MaLR 0 374 3 4 1727 1023 250 38 42 chr5 149744341 149744629 -2792630 - B4 SINE B4 -5 287 1 4 1727 421 250 184 18 chr5 149744687 149744850 -2792409 - Tigger7 DNA MER2_type -8 2483 2294 4 1727 627 218 48 8 chr5 149744878 149745003 -2792256 + B1_Mur1 SINE Alu 5 134 -15 4 1727 230 323 0 40 chr5 149745011 149745111 -2792148 + CT-rich Low_complexity Low_complexity 1 96 0 4 1727 204 97 0 0 chr5 149745144 149745175 -2792084 + (TCTCCC)n Simple_repeat Simple_repeat 6 36 0 4 1727 293 261 32 64 chr5 149745251 149745345 -2791914 - Tigger7 DNA MER2_type -2384 107 17 4 1727 3274 46 13 2 chr5 149746457 149746853 -2790406 - MTB LTR MaLR 0 400 1 4 1727 270 353 120 38 chr5 149747787 149747996 -2789263 + B4 SINE B4 61 286 -6 4 1727 1277 152 174 114 chr5 149748393 149748660 -2788599 + ORR1B2 LTR MaLR 1 320 -47 4 1727 1397 57 11 6 chr5 149748660 149748837 -2788422 + B2_Mm2 SINE B2 3 180 -15 5 1727 1277 114 179 43 chr5 149748837 149748908 -2788351 + ORR1B2 LTR MaLR 321 392 -2 4 1727 246 259 175 18 chr5 149749747 149749861 -2787398 + MTEb LTR MaLR 246 377 -2 5 1727 915 278 57 130 chr5 149749863 149750302 -2786957 + MTEb-int LTR MaLR 1 407 -1173 5 1727 229 336 56 0 chr5 149750308 149750415 -2786844 + Lx8 LINE L1 7050 7162 -311 5 1727 229 280 38 51 chr5 149750462 149750541 -2786718 + RMER15 LTR ERVL 363 440 -135 5 1727 270 352 98 22 chr5 149750544 149750727 -2786532 + RMER15-int LTR ERVL 88 284 -4715 5 1727 1096 336 88 27 chr5 149751092 149751694 -2785565 + RMER15-int LTR ERVL 1976 2614 -2385 5 1727 290 321 36 18 chr5 149751994 149752105 -2785154 + RMER15-int LTR ERVL 2962 3074 -1925 5 1727 26 0 0 0 chr5 149752174 149752200 -2785059 + AT_rich Low_complexity Low_complexity 1 26 0 5 1727 602 254 24 0 chr5 149752278 149752404 -2784855 - B1_Mur1 SINE Alu -20 129 1 5 1727 316 284 31 94 chr5 149752414 149752542 -2784717 - L1ME3B LINE L1 -340 5900 5781 5 1727 24 0 0 0 chr5 149752800 149752824 -2784435 + AT_rich Low_complexity Low_complexity 1 24 0 5 1727 252 355 71 11 chr5 149753269 149753451 -2783808 - MLT1J LTR MaLR -38 474 282 5 1727 960 217 43 0 chr5 149753988 149754195 -2783064 - B3 SINE B2 0 216 1 5 1727 1149 251 104 9 chr5 149754477 149754803 -2782456 - ORR1D2 LTR MaLR -5 365 9 5 1727 225 154 0 0 chr5 149755006 149755045 -2782214 + T-rich Low_complexity Low_complexity 1 39 0 5 1727 1376 232 116 60 chr5 149755615 149756096 -2781163 + RLTR18B LTR ERVK 1 508 -4 5 1727 214 322 44 11 chr5 149756124 149756215 -2781044 + MIRm SINE MIR 43 136 -140 5 1727 234 0 0 0 chr5 149756414 149756440 -2780819 + (T)n Simple_repeat Simple_repeat 1 26 0 5 1727 1235 41 14 0 chr5 149756440 149756586 -2780673 - B1_Mus1 SINE Alu 0 148 1 5 1727 269 312 34 150 chr5 149756741 149756816 -2780443 - ORR1E LTR MaLR -6 353 281 5 1727 627 281 43 58 chr5 149756816 149757024 -2780235 - B3 SINE B2 -7 209 5 5 1727 269 319 53 128 chr5 149757024 149757282 -2779977 - ORR1E LTR MaLR -82 292 36 5 1727 449 305 62 21 chr5 149757773 149757917 -2779342 + RSINE1 SINE B4 1 150 -15 5 1727 343 343 88 15 chr5 149758071 149758275 -2778984 - ORR1E LTR MaLR -133 226 8 5 1727 1137 182 33 9 chr5 149758465 149758676 -2778583 - B3 SINE B2 0 216 1 5 1727 369 242 87 11 chr5 149758933 149759025 -2778234 + ID_B1 SINE B4 105 203 -21 5 1727 210 154 26 0 chr5 149759030 149759069 -2778190 + G-rich Low_complexity Low_complexity 6 45 0 5 1727 973 212 38 19 chr5 149759082 149759233 -2778026 + B3 SINE B2 2 149 -67 5 1727 543 31 0 0 chr5 149759233 149759298 -2777961 + (TA)n Simple_repeat Simple_repeat 1 65 0 5 1727 973 212 38 19 chr5 149759298 149759357 -2777902 + B3 SINE B2 150 216 0 5 1727 253 281 80 32 chr5 149760805 149760843 -2776416 + MT2B2 LTR ERVL 121 164 -420 5 1727 334 306 83 0 chr5 149760843 149760951 -2776308 + PB1D10 SINE Alu 1 117 -3 5 1727 714 155 17 0 chr5 149761061 149761177 -2776082 - B3A SINE B2 -80 118 1 5 1727 231 167 0 0 chr5 149762667 149762709 -2774550 + (CA)n Simple_repeat Simple_repeat 2 43 0 5 1727 682 292 78 68 chr5 149763117 149763411 -2773848 - MER58B DNA MER1_type -44 297 1 5 1727 1844 149 102 9 chr5 149763490 149763814 -2773445 + ORR1B1 LTR MaLR 33 386 -8 5 1727 1037 192 59 0 chr5 149764096 149764299 -2772960 + B3 SINE B2 1 215 -1 5 1727 748 23 0 0 chr5 149764320 149764407 -2772852 - B1_Mus2 SINE Alu -8 139 53 5 1727 253 224 14 69 chr5 149764347 149764419 -2772840 - MT2B2 LTR ERVL -320 264 197 5 1727 252 211 123 27 chr5 149764355 149764428 -2772831 - RLTR25B LTR ERVK -519 509 430 5 1727 697 125 145 23 chr5 149765164 149765295 -2771964 + B1_Mus2 SINE Alu 1 147 0 5 1727 1087 233 24 0 chr5 149765330 149765536 -2771723 - B3 SINE B2 -5 211 1 5 1727 1310 171 0 18 chr5 149765586 149765806 -2771453 - B3 SINE B2 0 216 1 5 1727 346 253 11 67 chr5 149765815 149765904 -2771355 + PB1D10 SINE Alu 22 105 -12 5 1727 216 0 0 0 chr5 149765914 149765938 -2771321 + (CA)n Simple_repeat Simple_repeat 1 24 0 5 1727 1228 256 107 46 chr5 149766754 149767023 -2770236 - MTD LTR MaLR 0 419 131 5 1727 1890 119 103 16 chr5 149767023 149767400 -2769859 - RMER17C LTR ERVK 0 410 1 5 1727 1228 256 107 46 chr5 149767400 149767523 -2769736 - MTD LTR MaLR -289 130 3 5 1727 463 223 0 35 chr5 149767742 149767858 -2769401 - PB1D10 SINE Alu -1 116 5 5 1727 1582 123 20 4 chr5 149767981 149768234 -2769025 - RMER6A LTR ERVK 0 756 500 5 1727 234 105 0 0 chr5 149768241 149768279 -2768980 + (G)n Simple_repeat Simple_repeat 1 38 0 5 1727 520 312 69 0 chr5 149768873 149769033 -2768226 - ID_B1 SINE B4 0 224 54 5 1727 350 234 67 105 chr5 149769313 149769418 -2767841 + B1F2 SINE Alu 5 105 -44 5 1727 458 122 10 30 chr5 149769443 149769544 -2767715 + (TG)n Simple_repeat Simple_repeat 2 100 0 5 1727 805 202 75 0 chr5 149769765 149769938 -2767321 - MTE2b LTR MaLR -190 189 4 5 1727 989 172 39 6 chr5 149769995 149770176 -2767083 + B3 SINE B2 2 188 -28 5 1727 227 257 0 26 chr5 149771131 149771207 -2766052 + G-rich Low_complexity Low_complexity 1 74 0 5 1727 189 196 0 0 chr5 149772108 149772154 -2765105 + (CA)n Simple_repeat Simple_repeat 1 46 0 5 1727 326 189 13 39 chr5 149772215 149772292 -2764967 + PB1 SINE Alu 20 94 -33 5 1727 874 180 126 0 chr5 149772410 149772593 -2764666 + B3 SINE B2 1 206 -10 5 1727 234 0 0 0 chr5 149772594 149772620 -2764639 + (TTG)n Simple_repeat Simple_repeat 1 26 0 5 1727 1005 89 15 15 chr5 149772621 149772758 -2764501 - B1_Mur4 SINE Alu -13 137 1 5 1727 546 119 0 0 chr5 149772863 149772947 -2764312 + (TC)n Simple_repeat Simple_repeat 1 84 0 5 1727 21 0 0 0 chr5 149772953 149772974 -2764285 + AT_rich Low_complexity Low_complexity 1 21 0 5 1727 504 0 0 0 chr5 149772975 149773031 -2764228 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 5 1727 414 38 38 0 chr5 149773056 149773109 -2764150 - B2_Mm2 SINE B2 -94 101 47 5 1727 996 112 119 0 chr5 149773137 149773297 -2763962 - B2_Mm1t SINE B2 -14 179 1 5 1727 829 247 38 148 chr5 149773618 149773791 -2763468 + B3A SINE B2 2 168 -30 5 1727 375 23 0 0 chr5 149773791 149773835 -2763424 + (CA)n Simple_repeat Simple_repeat 2 45 0 5 1727 516 247 38 148 chr5 149773835 149773870 -2763389 + B2_Mm2 SINE B2 165 187 -8 5 1727 1013 236 15 0 chr5 149774443 149774642 -2762617 - B3 SINE B2 0 216 15 5 1727 267 256 36 12 chr5 149774647 149774730 -2762529 - PB1D10 SINE Alu -32 85 1 5 1727 223 343 65 36 chr5 149774763 149774902 -2762357 - L3 LINE CR1 -257 4232 4090 5 1727 2346 68 26 0 chr5 149775390 149775701 -2761558 - ORR1A2 LTR MaLR -8 319 1 5 1727 716 259 39 28 chr5 149775768 149775980 -2761279 + B3A SINE B2 2 192 -3 5 1727 461 198 26 78 chr5 149776004 149776119 -2761140 + PB1D10 SINE Alu 1 109 -8 5 1727 192 77 0 0 chr5 149777510 149777536 -2759723 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 5 1727 219 297 105 42 chr5 149777858 149777953 -2759306 - MIRc SINE MIR -32 236 136 5 1727 252 292 0 53 chr5 149778057 149778133 -2759126 + ID4_ SINE ID 3 74 -9 5 1727 933 199 57 56 chr5 149779153 149779643 -2757616 - RMER17C LTR ERVK -29 381 4 5 1727 286 255 118 39 chr5 149779677 149779779 -2757480 + B3 SINE B2 88 197 -19 5 1727 230 0 33 0 chr5 149779780 149779810 -2757449 + (CA)n Simple_repeat Simple_repeat 2 32 0 5 1727 354 98 0 0 chr5 149780205 149780256 -2757003 + (TAAG)n Simple_repeat Simple_repeat 1 51 0 5 1727 195 129 0 0 chr5 149780373 149780404 -2756855 + (A)n Simple_repeat Simple_repeat 1 31 0 5 1727 884 130 0 8 chr5 149780492 149780624 -2756635 + B1_Mm SINE Alu 2 132 -15 5 1727 232 237 67 17 chr5 149780744 149780804 -2756455 - MER63B DNA AcHobo 0 436 374 5 1727 609 14 0 0 chr5 149781230 149781300 -2755959 + (CA)n Simple_repeat Simple_repeat 1 70 0 5 1727 281 26 0 26 chr5 149781755 149781794 -2755465 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 5 1727 1079 181 106 87 chr5 149782089 149782410 -2754849 + RLTR11A LTR ERVK 199 525 -3 5 1727 405 0 0 0 chr5 149782643 149782688 -2754571 + (TC)n Simple_repeat Simple_repeat 2 46 0 5 1727 575 302 49 53 chr5 149782715 149783192 -2754067 + RLTR12B LTR ERVK 1 354 -5 5 1727 3306 110 2 8 chr5 149783198 149783676 -2753583 - MT2C_Mm LTR ERVL 0 475 1 5 1727 1432 208 91 3 chr5 149783788 149784073 -2753186 - MTD LTR MaLR -97 322 13 5 1727 325 336 88 78 chr5 149784162 149784456 -2752803 + Charlie22a DNA MER1_type 165 461 -30 5 1727 303 28 0 0 chr5 149785162 149785198 -2752061 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 5 1727 659 223 29 0 chr5 149785200 149785339 -2751920 - B1F SINE Alu -6 143 1 5 1727 830 207 87 13 chr5 149785358 149785588 -2751671 - L1MA5 LINE L1 -4 6296 6050 5 1727 214 319 16 70 chr5 149785620 149785748 -2751511 + L2a LINE L2 2512 2632 -787 5 1727 1645 130 57 70 chr5 149785840 149786155 -2751104 + ORR1B1 LTR MaLR 41 351 -43 5 1727 254 294 29 0 chr5 149786385 149786453 -2750806 - PB1D10 SINE Alu -42 75 6 5 1727 186 43 0 0 chr5 149786472 149786495 -2750764 + (TA)n Simple_repeat Simple_repeat 1 23 0 5 1727 592 256 30 30 chr5 149786508 149786641 -2750618 + RMER20B LTR ERVK 1 133 -494 5 1727 358 319 41 14 chr5 149786779 149786925 -2750334 + RMER20B LTR ERVK 366 515 -1 5 1727 267 211 0 66 chr5 149787001 149787062 -2750197 - RSINE1 SINE B4 -107 58 2 5 1727 188 271 82 20 chr5 149787078 149787176 -2750083 + L2a LINE L2 3277 3380 -46 5 1727 3396 40 2 0 chr5 149787370 149787767 -2749492 - MTB LTR MaLR -2 398 1 5 1727 397 269 46 37 chr5 149788308 149788416 -2748843 + PB1D10 SINE Alu 9 117 0 5 1727 366 351 37 0 chr5 149788413 149788547 -2748712 + MER2 DNA MER2_type 191 329 -16 5 1727 658 183 49 24 chr5 149788895 149789018 -2748241 + B1_Mur2 SINE Alu 19 144 -5 5 1727 545 83 0 12 chr5 149789019 149789104 -2748155 + (GGA)n Simple_repeat Simple_repeat 2 85 0 6 1727 477 50 0 0 chr5 149789106 149789166 -2748093 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 6 1727 253 182 235 29 chr5 149790866 149790934 -2746325 - B1F SINE Alu -54 95 14 6 1727 413 324 96 19 chr5 149790939 149791147 -2746112 - HAL1-3A_ME LINE L1 -659 2199 1976 6 1727 198 0 0 0 chr5 149791147 149791169 -2746090 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 6 1727 450 343 59 7 chr5 149791465 149791600 -2745659 - RSINE1 SINE B4 -22 143 2 6 1727 704 224 96 22 chr5 149791622 149791800 -2745459 - B3A SINE B2 -7 191 1 6 1727 29 0 0 0 chr5 149792023 149792052 -2745207 + AT_rich Low_complexity Low_complexity 1 29 0 6 1727 631 192 160 0 chr5 149792647 149792772 -2744487 + URR1A DNA MER1_type 2 146 -80 6 1727 2099 120 64 43 chr5 149792769 149793143 -2744116 + RLTR11A2 LTR ERVK 146 527 0 6 1727 561 210 48 8 chr5 149793183 149793308 -2743951 + B1_Mur2 SINE Alu 2 131 -18 6 1727 228 360 8 51 chr5 149793462 149793579 -2743680 + RMER4B LTR ERVK 14 125 -460 6 1727 1416 69 16 11 chr5 149793596 149793787 -2743472 - B2_Mm2 SINE B2 -2 193 2 6 1727 878 228 42 0 chr5 149794981 149795170 -2742089 - B3A SINE B2 0 198 2 6 1727 23 0 0 0 chr5 149795170 149795193 -2742066 + AT_rich Low_complexity Low_complexity 1 23 0 6 1727 261 0 0 0 chr5 149795292 149795321 -2741938 + (TAA)n Simple_repeat Simple_repeat 2 30 0 6 1727 810 240 30 40 chr5 149795335 149795535 -2741724 + B3A SINE B2 1 198 0 6 1727 1073 119 0 0 chr5 149795558 149795701 -2741558 + B1_Mus1 SINE Alu 1 143 -5 6 1727 511 215 18 61 chr5 149795841 149795955 -2741304 - PB1D9 SINE Alu -9 111 3 6 1727 891 138 0 0 chr5 149797032 149797162 -2740097 + B3 SINE B2 1 130 -86 6 1727 306 0 0 0 chr5 149797233 149797267 -2739992 + (GA)n Simple_repeat Simple_repeat 1 34 0 6 1727 961 149 7 13 chr5 149797309 149797459 -2739800 + B1_Mur4 SINE Alu 2 150 0 6 1727 189 0 0 0 chr5 149797479 149797500 -2739759 + (TGGA)n Simple_repeat Simple_repeat 3 23 0 6 1727 1216 202 27 142 chr5 149797699 149798149 -2739110 + RMER10B LTR ERVL 1 398 0 6 1727 21 36 0 0 chr5 149798150 149798178 -2739081 + AT_rich Low_complexity Low_complexity 1 28 0 6 1727 329 127 36 0 chr5 149798209 149798264 -2738995 + PB1D10 SINE Alu 53 109 -8 6 1727 958 170 147 16 chr5 149798364 149798555 -2738704 + B3 SINE B2 1 216 0 6 1727 304 264 83 28 chr5 149799641 149799659 -2737600 + L1MEf LINE L1 1974 1992 -4208 6 1727 1094 212 39 0 chr5 149799659 149799862 -2737397 + B3 SINE B2 1 211 -5 6 1727 304 264 83 28 chr5 149799862 149799952 -2737307 + L1MEf LINE L1 1993 2088 -4112 6 1727 274 316 24 73 chr5 149800364 149800487 -2736772 + B1F SINE Alu 28 144 -5 6 1727 231 229 225 14 chr5 149800501 149800572 -2736687 + B1F1 SINE Alu 13 98 -51 6 1727 208 0 0 59 chr5 149800670 149800704 -2736555 + (CCCCCA)n Simple_repeat Simple_repeat 6 37 0 6 1727 257 319 0 14 chr5 149800833 149800906 -2736353 + ID4_ SINE ID 1 72 -11 6 1727 429 20 0 0 chr5 149800906 149800956 -2736303 + (CA)n Simple_repeat Simple_repeat 2 51 0 6 1727 584 245 7 52 chr5 149800981 149801136 -2736123 + B1F SINE Alu 1 148 -1 6 1727 1069 187 36 5 chr5 149801139 149801333 -2735926 + B3 SINE B2 1 200 -16 6 1727 969 125 0 27 chr5 149801345 149801493 -2735766 + B1_Mur3 SINE Alu 6 149 0 6 1727 1399 81 21 0 chr5 149801727 149801913 -2735346 - B2_Mm2 SINE B2 -4 191 2 6 1727 428 214 20 10 chr5 149801975 149802074 -2735185 - MIR SINE MIR -111 151 52 6 1727 240 371 71 7 chr5 149802127 149802268 -2734991 + MER20 DNA MER1_type 59 208 -11 6 1727 606 51 0 0 chr5 149802896 149802974 -2734285 + (GTTTG)n Simple_repeat Simple_repeat 2 79 0 6 1727 235 250 15 15 chr5 149803346 149803411 -2733848 - ID4_ SINE ID -17 66 2 6 1727 228 279 95 9 chr5 149803445 149803550 -2733709 + Arthur1B DNA Tip100 2 115 -1110 6 1727 702 224 166 11 chr5 149803601 149803782 -2733477 - B3 SINE B2 -6 210 2 6 1727 854 111 0 16 chr5 149803925 149804053 -2733206 + B1_Mur4 SINE Alu 2 127 -23 6 1727 475 239 7 43 chr5 149803932 149804072 -2733187 + ID_B1 SINE B4 89 223 -1 6 1727 288 262 83 0 chr5 149804480 149804564 -2732695 - ID_B1 SINE B4 0 224 134 6 1727 668 226 7 20 chr5 149804612 149804761 -2732498 - B1_Mur1 SINE Alu 0 149 3 6 1727 240 59 0 0 chr5 149804821 149804855 -2732404 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 6 1727 257 345 26 52 chr5 149805000 149805116 -2732143 + PB1D10 SINE Alu 5 117 0 6 1727 1958 175 71 8 chr5 149805206 149805598 -2731661 + MTD LTR MaLR 1 417 -2 6 1727 563 174 10 20 chr5 149805898 149805998 -2731261 - B1_Mur2 SINE Alu 0 149 51 6 1727 638 256 0 8 chr5 149807220 149807354 -2729905 + B1_Mur1 SINE Alu 5 137 -12 6 1727 294 29 0 0 chr5 149808017 149808052 -2729207 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 6 1727 940 251 108 43 chr5 149808229 149808595 -2728664 + ORR1D2 LTR MaLR 1 378 0 6 1727 599 292 129 56 chr5 149809154 149809495 -2727764 + ORR1D2 LTR MaLR 1 366 -4 6 1727 202 224 41 0 chr5 149810473 149810522 -2726737 + C-rich Low_complexity Low_complexity 4 54 0 6 1727 277 170 19 0 chr5 149810547 149810600 -2726659 + MTD LTR MaLR 238 291 -128 6 1727 1081 142 5 73 chr5 149810625 149810830 -2726429 - URR1B DNA MER1_type -4 221 31 6 1727 211 304 0 18 chr5 149811321 149811378 -2725881 - ID4 SINE ID -25 58 3 6 1727 325 263 20 46 chr5 149811889 149812009 -2725250 - PB1D10 SINE Alu -12 137 24 6 1727 245 278 0 0 chr5 149812059 149812113 -2725146 - PB1D10 SINE Alu -31 86 33 6 1727 1420 62 17 0 chr5 149812543 149812720 -2724539 - B2_Mm2 SINE B2 -14 181 2 6 1727 441 0 0 0 chr5 149812840 149812889 -2724370 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1727 1000 95 34 0 chr5 149812889 149813036 -2724223 + B2_Mm2 SINE B2 11 162 -33 6 1727 1093 228 19 0 chr5 149813038 149813244 -2724015 - B3 SINE B2 -6 210 1 6 1727 198 0 0 0 chr5 149813953 149813975 -2723284 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 6 1727 379 352 69 5 chr5 149814077 149814294 -2722965 - AmnSINE1 SINE SINE -78 497 267 6 215 442 314 0 55 chr5 149815197 149815335 -2721924 + ID_B1 SINE B4 81 211 -13 6 1728 432 0 0 0 chr5 149815335 149815383 -2721876 + (GA)n Simple_repeat Simple_repeat 2 49 0 6 1728 230 108 0 0 chr5 149815463 149815500 -2721759 + Lx9 LINE L1 7600 7636 -8 6 1728 345 270 239 0 chr5 149815502 149815665 -2721594 - L1MC4a LINE L1 -47 7835 7634 6 1728 1065 107 0 7 chr5 149815722 149815872 -2721387 + B1_Mur4 SINE Alu 1 149 -1 6 1728 335 307 70 0 chr5 149815923 149816037 -2721222 + MT2A LTR ERVL 1 122 -411 6 1728 634 245 73 0 chr5 149815936 149816087 -2721172 + MTE2b LTR MaLR 18 179 -200 6 1728 850 150 7 14 chr5 149816093 149816235 -2721024 + B1_Mus2 SINE Alu 5 145 -2 6 1728 500 184 247 45 chr5 149816304 149816458 -2720801 - B3A SINE B2 -9 189 5 6 1728 1226 36 0 0 chr5 149816493 149816633 -2720626 + B1_Mus2 SINE Alu 2 141 -6 6 1728 192 40 0 0 chr5 149816637 149816662 -2720597 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 6 1728 656 142 19 0 chr5 149817311 149817417 -2719842 - PB1D10 SINE Alu -9 108 1 6 1728 190 264 105 70 chr5 149818661 149818775 -2718484 - L2b LINE L2 -12 3363 3246 6 1728 447 240 103 58 chr5 149819725 149819880 -2717379 + RSINE1 SINE B4 4 165 0 6 1728 236 176 14 21 chr5 149820035 149820089 -2717170 + PB1D7 SINE Alu 18 76 -41 6 1728 228 277 195 46 chr5 149820275 149820362 -2716897 + PB1D10 SINE Alu 1 100 -17 6 1728 1057 256 41 73 chr5 149820438 149820685 -2716574 + ORR1D2 LTR MaLR 1 240 -130 6 1728 408 20 0 0 chr5 149820685 149820734 -2716525 + (TG)n Simple_repeat Simple_repeat 2 50 0 6 1728 1057 256 41 73 chr5 149820734 149820827 -2716432 + ORR1D2 LTR MaLR 241 330 -40 6 1728 207 333 51 13 chr5 149820922 149821001 -2716258 + MIRm SINE MIR 148 229 -47 6 1728 414 0 0 0 chr5 149821049 149821095 -2716164 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1728 258 327 136 18 chr5 149821404 149821625 -2715634 - ORR1E LTR MaLR -112 247 1 6 1728 245 284 150 23 chr5 149821663 149821836 -2715423 - Charlie1 DNA MER1_type -2 2779 2585 6 1728 288 0 0 0 chr5 149821840 149821872 -2715387 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6 1728 366 243 0 37 chr5 149821876 149821983 -2715276 - B1F2 SINE Alu -3 146 44 6 1728 552 223 27 0 chr5 149822099 149822211 -2715048 - PB1D10 SINE Alu 0 117 3 6 1728 879 204 357 7 chr5 149822228 149822500 -2714759 + ORR1D2 LTR MaLR 4 370 0 6 1728 297 236 21 63 chr5 149822500 149822595 -2714664 + B4A SINE B4 83 173 -119 6 1728 556 125 16 0 chr5 149822515 149822611 -2714648 + B1_Mur2 SINE Alu 9 108 -12 6 1728 428 258 63 16 chr5 149822709 149822722 -2714537 - ID_B1 SINE B4 -2 222 91 6 1728 454 216 35 18 chr5 149822722 149822835 -2714424 - B1F SINE Alu -25 124 10 6 1728 270 272 16 95 chr5 149822739 149822865 -2714394 - MT2B LTR ERVL -341 260 145 6 1728 263 322 23 0 chr5 149823423 149823510 -2713749 + MIR3 SINE MIR 109 197 -11 6 1728 311 336 38 9 chr5 149823968 149824073 -2713186 + MLT1A0 LTR MaLR 21 128 -237 7 1728 1772 160 104 13 chr5 149824084 149824401 -2712858 + ORR1B1 LTR MaLR 41 386 -8 7 1728 855 171 149 0 chr5 149824468 149824643 -2712616 + B3 SINE B2 5 205 -11 7 1728 21 0 0 0 chr5 149824643 149824664 -2712595 + AT_rich Low_complexity Low_complexity 1 21 0 7 1728 452 279 49 14 chr5 149824863 149825005 -2712254 + B1F2 SINE Alu 2 148 -1 7 1728 898 128 14 34 chr5 149825350 149825496 -2711763 - B1_Mur3 SINE Alu 0 149 7 7 1728 563 283 26 34 chr5 149825355 149825556 -2711703 - ID_B1 SINE B4 0 224 12 7 1728 189 329 109 48 chr5 149826072 149826219 -2711040 + MIRb SINE MIR 86 241 -27 7 1728 276 202 0 30 chr5 149826721 149826859 -2710400 + GA-rich Low_complexity Low_complexity 1 133 0 7 1728 264 326 0 30 chr5 149826860 149826961 -2710298 + G-rich Low_complexity Low_complexity 5 102 0 7 1728 225 0 0 0 chr5 149827439 149827464 -2709795 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1728 21 0 0 0 chr5 149827847 149827868 -2709391 + AT_rich Low_complexity Low_complexity 1 21 0 7 1728 360 0 0 0 chr5 149828217 149828257 -2709002 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 7 1728 1137 75 0 20 chr5 149828348 149828498 -2708761 - B1_Mus1 SINE Alu 0 148 2 7 1728 231 130 0 61 chr5 149828639 149828688 -2708571 - B3 SINE B2 -167 49 4 7 1728 695 149 0 9 chr5 149828727 149828835 -2708424 - B1_Mur2 SINE Alu -1 148 42 7 1728 227 107 136 51 chr5 149828997 149829056 -2708203 + B3 SINE B2 153 216 0 7 1728 561 72 0 0 chr5 149829077 149829160 -2708099 + L1_Mus3 LINE L1 6544 6626 -12 7 1728 2003 83 153 3 chr5 149829382 149829709 -2707550 + RLTR33 LTR ERVK 1 376 -302 7 1728 2101 111 16 9 chr5 149829713 149830032 -2707227 - ORR1A4 LTR MaLR -8 321 1 7 1728 1857 182 3 16 chr5 149830032 149830343 -2706916 + RLTR33 LTR ERVK 372 678 0 7 1728 713 151 0 0 chr5 149830343 149830449 -2706810 + B1_Mur3 SINE Alu 12 117 -32 7 1728 472 245 18 35 chr5 149830568 149830682 -2706577 + RSINE1 SINE B4 25 136 -29 7 1728 465 103 0 0 chr5 149830686 149830754 -2706505 + (CA)n Simple_repeat Simple_repeat 1 68 0 7 1728 2192 107 6 9 chr5 149830945 149831265 -2705994 + ORR1A2 LTR MaLR 1 319 -8 7 1728 629 313 27 19 chr5 149831366 149831600 -2705659 - ID_B1 SINE B4 -60 232 3 7 1728 250 274 0 46 chr5 149831625 149831690 -2705569 - ID4_ SINE ID -2 81 20 7 1728 228 225 0 0 chr5 149832397 149832437 -2704822 + (CACG)n Simple_repeat Simple_repeat 4 43 0 7 1728 535 268 62 47 chr5 149833316 149833508 -2703751 - B3A SINE B2 -3 195 1 7 1728 297 0 0 0 chr5 149833518 149833551 -2703708 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 7 1728 226 167 24 0 chr5 149833554 149833596 -2703663 - B1_Mur2 SINE Alu -11 138 96 7 1728 378 0 0 0 chr5 149833632 149833674 -2703585 + (TG)n Simple_repeat Simple_repeat 2 43 0 7 1728 1011 285 177 16 chr5 149833921 149834367 -2702892 + MT2A LTR ERVL 16 533 0 7 1728 864 0 0 0 chr5 149834620 149834720 -2702539 + B1_Mm SINE Alu 37 136 -11 7 1728 831 93 0 0 chr5 149834734 149834852 -2702407 + (GAAA)n Simple_repeat Simple_repeat 3 120 0 7 1728 1395 95 16 0 chr5 149834864 149835053 -2702206 + B2_Mm2 SINE B2 3 194 -1 7 1728 233 282 118 0 chr5 149835328 149835413 -2701846 - MLT1E1A LTR MaLR -189 491 397 7 1728 346 182 15 29 chr5 149835424 149835492 -2701767 - ID_B1 SINE B4 -74 150 84 7 1728 370 119 17 0 chr5 149835434 149835493 -2701766 - PB1D9 SINE Alu -59 61 2 7 1728 347 183 0 0 chr5 149835526 149835586 -2701673 - B1_Mur1 SINE Alu -5 144 85 7 1728 453 266 55 9 chr5 149835804 149835914 -2701345 - B1F SINE Alu 0 149 35 7 1728 235 282 125 18 chr5 149835830 149835942 -2701317 - MT2B2 LTR ERVL -306 278 155 7 1728 1072 237 150 125 chr5 149835970 149836490 -2700769 + MT2A LTR ERVL 1 533 0 7 1728 336 48 0 0 chr5 149836542 149836584 -2700675 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 7 1728 1137 43 14 0 chr5 149836584 149836722 -2700537 - B1_Mus1 SINE Alu -8 140 1 7 1728 639 0 0 0 chr5 149836900 149836971 -2700288 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 7 1728 192 77 0 0 chr5 149836973 149836999 -2700260 + (TCC)n Simple_repeat Simple_repeat 3 28 0 7 1728 539 212 0 0 chr5 149837013 149837112 -2700147 - PB1D9 SINE Alu 0 120 22 7 1728 630 237 95 30 chr5 149837745 149837945 -2699314 + B3 SINE B2 1 213 -3 7 1728 914 115 46 0 chr5 149837951 149838081 -2699178 + B1_Mur4 SINE Alu 3 138 -12 7 1728 369 269 124 0 chr5 149838304 149838449 -2698810 + Tigger5 DNA MER2_type 97 259 -2147 7 1728 270 247 74 21 chr5 149838443 149838538 -2698721 + Tigger5 DNA MER2_type 2302 2401 -5 7 1728 342 241 98 57 chr5 149838644 149838692 -2698567 + MT2B LTR ERVL 113 165 -436 7 1728 420 200 112 0 chr5 149838692 149838772 -2698487 + B1F2 SINE Alu 2 90 -59 7 1728 1349 98 121 0 chr5 149838772 149838996 -2698263 + MTC LTR MaLR 1 251 -170 7 1728 583 246 43 129 chr5 149839017 149839250 -2698009 + B3 SINE B2 3 215 -1 7 1728 680 214 8 0 chr5 149839252 149839383 -2697876 + B1_Mur1 SINE Alu 1 132 -17 7 1728 795 159 18 6 chr5 149839406 149839571 -2697688 + GA-rich Low_complexity Low_complexity 4 170 0 7 1728 702 202 8 30 chr5 149839657 149839790 -2697469 + B1_Mur2 SINE Alu 20 149 0 7 1728 382 300 59 76 chr5 149839840 149840078 -2697181 - MIR SINE MIR -2 260 27 7 1728 528 16 0 0 chr5 149840169 149840230 -2697029 + (TC)n Simple_repeat Simple_repeat 2 62 0 7 1728 662 230 56 42 chr5 149840334 149840547 -2696712 + B3 SINE B2 1 216 0 7 1728 722 158 13 67 chr5 149840743 149840866 -2696393 + B1_Mur3 SINE Alu 9 133 -16 7 1728 3250 58 5 0 chr5 149840866 149841264 -2695995 + MTB LTR MaLR 1 400 0 7 1728 722 158 13 67 chr5 149841264 149841289 -2695970 + B1_Mur3 SINE Alu 134 149 0 7 1728 254 194 0 16 chr5 149841866 149841929 -2695330 + C-rich Low_complexity Low_complexity 2 63 0 7 1728 306 247 39 0 chr5 149841954 149842031 -2695228 - B1F1 SINE Alu -27 122 43 7 1728 698 210 41 14 chr5 149842031 149842176 -2695083 - B1F SINE Alu 0 149 1 7 1728 641 260 14 7 chr5 149842198 149842345 -2694914 - B1F SINE Alu -1 148 1 7 1728 814 288 70 16 chr5 149842436 149842680 -2694579 + MER2 DNA MER2_type 89 345 0 7 1728 535 287 98 16 chr5 149843823 149844007 -2693252 + B3 SINE B2 1 199 -17 7 1728 192 77 0 0 chr5 149844009 149844035 -2693224 + (CATA)n Simple_repeat Simple_repeat 1 26 0 7 1728 557 264 24 0 chr5 149844091 149844216 -2693043 + B3A SINE B2 10 137 -61 7 1728 1172 91 0 88 chr5 149844250 149844442 -2692817 + B2_Mm2 SINE B2 2 176 -19 7 1728 264 59 0 0 chr5 149844464 149844498 -2692761 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7 1728 276 231 29 95 chr5 149844504 149844609 -2692650 - PB1D10 SINE Alu -8 109 12 7 1728 279 239 0 0 chr5 149845018 149845106 -2692153 + (TG)n Simple_repeat Simple_repeat 1 88 0 7 1728 647 214 81 27 chr5 149845106 149845255 -2692004 - RSINE1 SINE B4 0 165 9 7 1728 285 146 0 0 chr5 149845266 149845314 -2691945 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 7 1728 754 202 0 11 chr5 149845327 149845507 -2691752 + CT-rich Low_complexity Low_complexity 3 180 0 7 1728 305 236 0 0 chr5 149845507 149845562 -2691697 + polypyrimidine Low_complexity Low_complexity 2 56 0 7 1728 188 125 50 0 chr5 149845577 149845617 -2691642 + CT-rich Low_complexity Low_complexity 3 44 0 7 1728 258 226 14 42 chr5 149845662 149845733 -2691526 - B1F1 SINE Alu -58 69 1 7 1728 1057 245 182 47 chr5 149846168 149846614 -2690645 - RMER13A LTR ERVK -354 506 1 7 1728 848 120 0 84 chr5 149847080 149847097 -2690162 - B1_Mur4 SINE Alu 0 150 141 7 1728 207 0 0 0 chr5 149847097 149847120 -2690139 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 7 1728 848 120 0 84 chr5 149847120 149847257 -2690002 - B1_Mur4 SINE Alu -10 140 9 7 1728 1320 203 104 14 chr5 149847248 149847603 -2689656 - MTD LTR MaLR -32 387 1 7 1728 1153 94 76 27 chr5 149847619 149847804 -2689455 - B2_Mm2 SINE B2 -1 194 1 7 1728 1022 121 0 20 chr5 149848075 149848227 -2689032 + B1_Mur4 SINE Alu 1 149 -1 7 1728 219 0 95 24 chr5 149848232 149848274 -2688985 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 7 1728 956 174 96 10 chr5 149848565 149848762 -2688497 + B3 SINE B2 1 214 -2 7 1728 241 298 99 87 chr5 149848777 149848941 -2688318 + B4 SINE B4 81 246 -46 7 1728 253 270 16 0 chr5 149848942 149849005 -2688254 + GA-rich Low_complexity Low_complexity 3 66 0 7 1728 1086 86 0 0 chr5 149849666 149849817 -2687442 + (TTCTC)n Simple_repeat Simple_repeat 1 151 0 7 1728 1385 39 0 17 chr5 149849818 149849999 -2687260 + (TCCCC)n Simple_repeat Simple_repeat 3 180 0 7 1728 516 105 0 0 chr5 149849999 149850075 -2687184 + (TTTC)n Simple_repeat Simple_repeat 3 78 0 7 1728 714 124 12 147 chr5 149850145 149850315 -2686944 + B1_Mur4 SINE Alu 3 149 -1 7 1728 204 141 0 59 chr5 149850423 149850491 -2686768 + T-rich Low_complexity Low_complexity 2 65 0 7 1728 323 225 82 0 chr5 149850499 149850588 -2686671 - B1_Mur1 SINE Alu -37 112 3 7 1728 252 264 154 44 chr5 149850507 149850598 -2686661 - MT2B LTR ERVL -344 257 157 7 1728 829 173 108 16 chr5 149850614 149850808 -2686451 - B3 SINE B2 0 216 5 7 1728 882 225 6 12 chr5 149850811 149850982 -2686277 - B3 SINE B2 -38 178 9 7 1728 527 43 14 0 chr5 149851090 149851160 -2686099 + (GA)n Simple_repeat Simple_repeat 2 72 0 7 1728 906 236 64 0 chr5 149851223 149851426 -2685833 + B3 SINE B2 1 216 0 8 1728 365 224 118 0 chr5 149851498 149851581 -2685678 - B3 SINE B2 -10 206 114 8 1728 618 279 80 57 chr5 149851581 149851931 -2685328 + RLTR15 LTR ERVK 1 358 -1 8 1728 508 244 61 0 chr5 149851931 149852029 -2685230 - B3 SINE B2 -95 121 16 8 1728 1135 229 59 88 chr5 149852387 149852741 -2684518 - MTEa LTR MaLR -5 374 31 8 1728 890 247 166 43 chr5 149852939 149852959 -2684300 + RMER5 LTR ERV1 1 21 -513 8 1728 195 42 0 0 chr5 149852959 149852983 -2684276 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 8 1728 890 247 166 43 chr5 149852983 149853241 -2684018 + RMER5 LTR ERV1 22 331 -203 8 1728 861 168 0 26 chr5 149853241 149853394 -2683865 + B1_Mur4 SINE Alu 2 150 0 8 1728 890 247 166 43 chr5 149853394 149853409 -2683850 + RMER5 LTR ERV1 332 346 -188 8 1728 721 181 79 7 chr5 149853409 149853548 -2683711 + B1_Mur1 SINE Alu 1 149 0 8 1728 890 247 166 43 chr5 149853548 149853649 -2683610 + RMER5 LTR ERV1 347 444 -90 8 1728 225 258 29 43 chr5 149853794 149853863 -2683396 + ID2 SINE ID 16 83 0 8 1728 1440 84 5 0 chr5 149853936 149854126 -2683133 + B2_Mm1t SINE B2 2 192 -1 8 1728 227 214 50 67 chr5 149854208 149854268 -2682991 + BC1_Mm scRNA scRNA 3 61 -91 8 1728 583 179 16 41 chr5 149854382 149854504 -2682755 - PB1D9 SINE Alu 0 120 2 8 1728 1279 47 12 17 chr5 149855227 149855399 -2681860 - B2_Mm2 SINE B2 -8 187 17 8 1728 691 264 20 0 chr5 149855410 149855558 -2681701 + RSINE1 SINE B4 3 153 -12 8 1728 374 0 22 0 chr5 149855883 149855929 -2681330 + (CA)n Simple_repeat Simple_repeat 1 47 0 8 1728 252 0 0 0 chr5 149855929 149855956 -2681303 + (CCCTAA)n Simple_repeat Simple_repeat 1 28 0 8 1728 251 81 0 51 chr5 149856243 149856282 -2680977 - MurSatRep1 Unknown Unknown -1862 275 239 8 1728 217 119 16 33 chr5 149856316 149856377 -2680882 + A-rich Low_complexity Low_complexity 2 61 0 8 1728 355 327 0 0 chr5 149856459 149856560 -2680699 + L1MC LINE L1 5559 5659 -2223 8 1728 345 227 40 0 chr5 149856662 149856737 -2680522 + B1F SINE Alu 71 148 -1 8 1728 760 234 91 11 chr5 149856763 149856949 -2680310 + B3 SINE B2 16 216 0 8 1728 456 225 26 26 chr5 149856951 149857065 -2680194 + PB1D9 SINE Alu 1 114 -6 8 1728 21 36 0 0 chr5 149857065 149857093 -2680166 + AT_rich Low_complexity Low_complexity 1 28 0 8 1728 198 0 0 0 chr5 149857857 149857879 -2679380 + (TA)n Simple_repeat Simple_repeat 1 22 0 8 1728 337 238 191 0 chr5 149857940 149858045 -2679214 + ID_B1 SINE B4 83 207 -17 8 1728 219 140 94 57 chr5 149858637 149858690 -2678569 - RSINE1 SINE B4 -109 56 2 8 1728 215 118 0 56 chr5 149859947 149860001 -2677258 + A-rich Low_complexity Low_complexity 1 51 0 8 1728 365 170 0 11 chr5 149860328 149860417 -2676842 + CT-rich Low_complexity Low_complexity 2 89 0 8 1728 25 51 0 0 chr5 149862894 149862933 -2674326 + GC_rich Low_complexity Low_complexity 1 39 0 8 1728 201 132 0 0 chr5 149863090 149863128 -2674131 + (T)n Simple_repeat Simple_repeat 1 38 0 8 1728 318 115 0 0 chr5 149863472 149863524 -2673735 + (TG)n Simple_repeat Simple_repeat 1 52 0 8 1728 50 87 0 0 chr5 149863536 149863663 -2673596 + GC_rich Low_complexity Low_complexity 1 127 0 8 1728 258 100 50 0 chr5 149863683 149863743 -2673516 + (GA)n Simple_repeat Simple_repeat 1 63 0 8 1728 310 226 16 60 chr5 149863892 149864076 -2673183 + (CCCG)n Simple_repeat Simple_repeat 1 176 0 8 1728 23 0 0 0 chr5 149864114 149864137 -2673122 + AT_rich Low_complexity Low_complexity 1 23 0 8 1728 23 0 0 0 chr5 149864173 149864196 -2673063 + AT_rich Low_complexity Low_complexity 1 23 0 8 1728 189 132 0 0 chr5 149864254 149864292 -2672967 + (CTCGG)n Simple_repeat Simple_repeat 1 38 0 8 1728 22 0 0 0 chr5 149864447 149864469 -2672790 + GC_rich Low_complexity Low_complexity 1 22 0 8 1728 25 102 0 0 chr5 149864899 149864987 -2672272 + GC_rich Low_complexity Low_complexity 1 88 0 8 1728 372 43 0 0 chr5 149865457 149865503 -2671756 + (CA)n Simple_repeat Simple_repeat 1 46 0 8 1728 216 97 0 0 chr5 149866152 149866183 -2671076 + (CA)n Simple_repeat Simple_repeat 2 32 0 8 1728 2098 143 99 16 chr5 149866203 149866586 -2670673 + MTC LTR MaLR 1 415 -6 8 1728 694 168 0 25 chr5 149866586 149866708 -2670551 + B1_Mur1 SINE Alu 23 141 -8 8 1728 277 274 25 151 chr5 149866708 149866745 -2670514 + MT2B LTR ERVL 187 325 -276 8 1728 558 202 0 0 chr5 149866900 149866999 -2670260 + B3 SINE B2 3 101 -115 8 1728 533 82 6 18 chr5 149867262 149867358 -2669901 - B1_Mus2 SINE Alu -56 93 2 8 1728 366 137 29 44 chr5 149867416 149867503 -2669756 - B1_Mur3 SINE Alu 0 147 63 8 1728 268 266 0 0 chr5 149867528 149867592 -2669667 - PB1D10 SINE Alu -1 116 53 8 1728 835 141 104 0 chr5 149867628 149867645 -2669614 - B1_Mur4 SINE Alu 0 150 134 8 1728 342 0 0 0 chr5 149867645 149867683 -2669576 + (TG)n Simple_repeat Simple_repeat 2 39 0 8 1728 835 141 104 0 chr5 149867683 149867800 -2669459 - B1_Mur4 SINE Alu -17 133 3 8 1728 248 190 0 65 chr5 149867890 149867952 -2669307 - PB1D10 SINE Alu -8 109 52 8 1728 1256 21 0 14 chr5 149867975 149868123 -2669136 - B1_Mus2 SINE Alu 0 147 2 8 1728 180 0 0 0 chr5 149868166 149868186 -2669073 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 8 1728 687 147 0 0 chr5 149868190 149868292 -2668967 - B1_Mur3 SINE Alu -5 144 43 8 1728 310 200 103 81 chr5 149868220 149868307 -2668952 - MT2B LTR ERVL -337 264 176 8 1728 226 211 158 0 chr5 149868595 149868652 -2668607 + ID4 SINE ID 8 73 -10 8 1728 324 289 0 40 chr5 149868884 149868985 -2668274 - PB1D10 SINE Alu -2 115 19 8 1728 228 318 174 52 chr5 149869009 149869221 -2668038 + L2c LINE L2 3150 3387 0 8 1728 204 180 0 32 chr5 149869348 149869411 -2667848 + (TTTAA)n Simple_repeat Simple_repeat 1 61 0 8 1728 548 224 0 0 chr5 149869422 149869520 -2667739 + PB1D9 SINE Alu 5 102 -18 8 1728 399 41 0 0 chr5 149869536 149869585 -2667674 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 8 1728 1159 202 0 9 chr5 149869594 149869809 -2667450 + B3 SINE B2 1 213 -3 8 1728 1401 43 15 71 chr5 149869818 149870016 -2667243 + B2_Mm2 SINE B2 2 188 -7 8 1728 22 0 0 0 chr5 149870016 149870038 -2667221 + AT_rich Low_complexity Low_complexity 1 22 0 8 1728 33 0 0 0 chr5 149870109 149870142 -2667117 + AT_rich Low_complexity Low_complexity 1 33 0 8 1728 942 155 0 13 chr5 149870204 149870354 -2666905 - B1_Mus1 SINE Alu 0 148 1 8 1728 467 262 31 62 chr5 149870507 149870637 -2666622 + B1_Mur3 SINE Alu 1 126 -23 8 1728 249 281 109 33 chr5 149870866 149870958 -2666301 + PB1D10 SINE Alu 19 117 0 8 1728 219 69 0 0 chr5 149871069 149871098 -2666161 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 8 1728 2737 36 18 0 chr5 149871160 149871490 -2665769 - L1Md_F2 LINE L1 -1 6581 6246 8 1728 637 172 69 0 chr5 149871574 149871690 -2665569 + B1_Mus1 SINE Alu 5 128 -20 8 1728 180 182 0 0 chr5 149871699 149871743 -2665516 + (CCAA)n Simple_repeat Simple_repeat 4 47 0 8 1728 327 330 0 10 chr5 149871769 149871870 -2665389 - PB1D10 SINE Alu -11 106 7 8 1728 265 259 12 47 chr5 149871805 149871890 -2665369 + YREP_Mm Unknown Unknown 245 326 -1486 8 1728 440 174 11 0 chr5 149871919 149872011 -2665248 + CT-rich Low_complexity Low_complexity 2 94 0 8 1728 314 252 87 196 chr5 149872012 149872045 -2665214 - B4A SINE B4 -46 246 219 8 1728 180 0 0 0 chr5 149872045 149872065 -2665194 + (TTG)n Simple_repeat Simple_repeat 2 21 0 8 1728 488 213 53 0 chr5 149872065 149872159 -2665100 - B1_Mur4 SINE Alu -6 144 46 8 1728 314 252 87 196 chr5 149872159 149872186 -2665073 - B4A SINE B4 -74 218 1 8 1728 811 149 0 0 chr5 149872186 149872307 -2664952 - B3 SINE B2 -95 121 1 8 1728 742 237 75 10 chr5 149872333 149872533 -2664726 - B3 SINE B2 -2 214 2 8 1728 269 376 45 9 chr5 149872617 149872727 -2664532 - PB1D9 SINE Alu -6 114 1 8 1728 676 187 136 7 chr5 149873188 149873328 -2663931 - RSINE1 SINE B4 -6 159 2 8 1728 380 302 53 15 chr5 149873460 149873591 -2663668 + RSINE1 SINE B4 3 138 -27 8 1728 238 26 51 0 chr5 149873656 149873695 -2663564 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1728 29 47 0 0 chr5 149873706 149873749 -2663510 + AT_rich Low_complexity Low_complexity 1 43 0 8 1728 262 61 20 20 chr5 149874185 149874235 -2663024 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 8 1728 235 279 0 14 chr5 149874345 149874414 -2662845 + L1MB7 LINE L1 5728 5795 -379 8 1728 922 206 74 6 chr5 149874486 149874662 -2662597 - B3 SINE B2 -9 207 20 8 1728 632 215 29 7 chr5 149874683 149874819 -2662440 - B1_Mur1 SINE Alu -7 142 4 8 1728 297 0 0 0 chr5 149874932 149874965 -2662294 + (CA)n Simple_repeat Simple_repeat 1 33 0 8 1728 1051 80 0 0 chr5 149874965 149875102 -2662157 - B2_Mm2 SINE B2 -56 139 3 8 1728 500 105 347 0 chr5 149875103 149875198 -2662061 + B1_Mus1 SINE Alu 13 140 -8 8 1728 288 327 0 45 chr5 149875227 149875339 -2661920 - PB1D10 SINE Alu -7 110 4 8 1728 646 241 124 10 chr5 149875369 149875570 -2661689 + B4 SINE B4 2 225 -67 8 1728 204 40 0 0 chr5 149875620 149875645 -2661614 + (CATA)n Simple_repeat Simple_repeat 3 27 0 8 1728 507 33 0 0 chr5 149875676 149875737 -2661522 + (CA)n Simple_repeat Simple_repeat 2 62 0 8 1728 393 22 0 0 chr5 149875737 149875782 -2661477 + (GA)n Simple_repeat Simple_repeat 2 47 0 8 1728 747 257 56 19 chr5 149875883 149876097 -2661162 + L1MB7 LINE L1 5963 6184 0 8 1728 278 176 23 0 chr5 149876587 149876664 -2660595 + B1_Mm SINE Alu 71 149 0 8 1728 191 167 24 0 chr5 149876667 149876709 -2660550 + A-rich Low_complexity Low_complexity 3 45 0 8 1728 237 191 0 41 chr5 149877015 149877064 -2660195 - BC1_Mm scRNA scRNA -98 54 8 9 1728 368 255 10 10 chr5 149877198 149877297 -2659962 + PB1D10 SINE Alu 1 99 -18 9 1728 627 177 129 0 chr5 149877312 149877436 -2659823 + B1_Mur1 SINE Alu 10 149 0 9 1728 654 95 0 0 chr5 149877437 149877532 -2659727 + (GA)n Simple_repeat Simple_repeat 2 96 0 9 1728 25 31 0 0 chr5 149877595 149877627 -2659632 + AT_rich Low_complexity Low_complexity 1 32 0 9 1728 641 247 51 22 chr5 149877639 149877817 -2659442 - B3A SINE B2 -15 183 1 9 1728 702 204 144 0 chr5 149878378 149878545 -2658714 - B3 SINE B2 -25 191 1 9 1728 38 51 0 0 chr5 149878569 149878628 -2658631 + AT_rich Low_complexity Low_complexity 1 59 0 9 1728 342 0 0 0 chr5 149878655 149878693 -2658566 + (TTA)n Simple_repeat Simple_repeat 2 39 0 9 1728 1011 98 0 0 chr5 149878695 149878828 -2658431 - B1_Mus1 SINE Alu -6 142 10 9 1728 1038 92 0 0 chr5 149878858 149878999 -2658260 - B2_Mm2 SINE B2 -53 142 2 9 1728 265 279 15 0 chr5 149880167 149880235 -2657024 - PB1 SINE Alu -22 105 37 9 1728 219 308 47 101 chr5 149880335 149880483 -2656776 - B1_Mur4 SINE Alu -5 145 6 9 1728 303 283 57 16 chr5 149880539 149880661 -2656598 - ID_B1 SINE B4 -5 219 93 9 1728 306 0 0 0 chr5 149880889 149880923 -2656336 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 9 1728 1224 48 0 7 chr5 149881016 149881164 -2656095 + B1_Mus1 SINE Alu 1 147 -1 9 1728 213 368 34 17 chr5 149881207 149881326 -2655933 + B1_Mus1 SINE Alu 28 148 0 9 1728 279 0 0 0 chr5 149881350 149881381 -2655878 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1728 1169 69 0 0 chr5 149881381 149881517 -2655742 - B1_Mus1 SINE Alu -10 138 3 9 1728 827 126 8 0 chr5 149881535 149881662 -2655597 + B1_Mus1 SINE Alu 1 128 -20 9 1728 550 189 15 62 chr5 149881981 149882095 -2655164 + B1F SINE Alu 26 135 -14 9 1728 378 0 0 0 chr5 149882095 149882137 -2655122 + (TAA)n Simple_repeat Simple_repeat 1 42 0 9 1728 550 189 15 62 chr5 149882137 149882152 -2655107 + B1F SINE Alu 136 149 0 9 1728 684 93 0 0 chr5 149882642 149882739 -2654520 + (TCCC)n Simple_repeat Simple_repeat 4 100 0 9 1728 371 158 104 104 chr5 149882739 149882845 -2654414 - B1_Mur4 SINE Alu -7 143 38 9 1728 385 206 52 42 chr5 149882792 149882888 -2654371 - 5S rRNA rRNA -23 98 2 9 1728 305 226 0 0 chr5 149882889 149882942 -2654317 - PB1D9 SINE Alu -67 53 1 9 1728 839 154 0 32 chr5 149883055 149883209 -2654050 - B1_Mur4 SINE Alu 0 150 2 9 1728 612 233 25 51 chr5 149883215 149883373 -2653886 + B3 SINE B2 38 191 -25 9 1728 1368 56 62 6 chr5 149883395 149883574 -2653685 + B2_Mm2 SINE B2 1 189 -6 9 1728 570 67 0 0 chr5 149883850 149883925 -2653334 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 9 1728 35 54 0 0 chr5 149884116 149884172 -2653087 + AT_rich Low_complexity Low_complexity 1 56 0 9 1728 879 172 0 0 chr5 149884222 149884385 -2652874 + (TA)n Simple_repeat Simple_repeat 2 164 0 9 1728 270 0 0 0 chr5 149884385 149884415 -2652844 + (CA)n Simple_repeat Simple_repeat 2 31 0 9 1728 240 88 0 0 chr5 149884459 149884493 -2652766 + B1_Mur4 SINE Alu 110 143 -7 9 1728 207 0 0 0 chr5 149884497 149884520 -2652739 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9 1728 551 242 0 0 chr5 149884525 149884649 -2652610 - B3 SINE B2 -91 125 2 9 1728 828 206 87 10 chr5 149884676 149884872 -2652387 - B3 SINE B2 -5 211 1 9 1728 337 287 11 11 chr5 149884877 149884965 -2652294 - B1_Mur2 SINE Alu 0 149 62 9 1728 284 227 100 30 chr5 149885695 149885795 -2651464 + PB1D10 SINE Alu 5 111 -6 9 1728 973 210 60 0 chr5 149885858 149886058 -2651201 + B3 SINE B2 1 212 -4 9 1728 423 0 0 0 chr5 149886176 149886223 -2651036 + (TTA)n Simple_repeat Simple_repeat 2 48 0 9 1728 328 293 40 10 chr5 149886448 149886548 -2650711 + B1F SINE Alu 38 140 -9 9 1728 631 207 183 6 chr5 149886576 149886751 -2650508 - B3 SINE B2 -10 206 1 9 1728 1525 211 92 20 chr5 149887093 149887378 -2649881 - ORR1C2 LTR MaLR 0 384 78 9 1728 2514 63 22 6 chr5 149887378 149887699 -2649560 - ORR1A2 LTR MaLR 0 327 2 9 1728 1525 211 92 20 chr5 149887699 149887761 -2649498 - ORR1C2 LTR MaLR -307 77 12 9 1728 2002 88 22 46 chr5 149888284 149888657 -2648602 + ORR1A2 LTR MaLR 1 319 -8 9 1728 238 159 0 22 chr5 149888967 149889012 -2648247 + L1MA5 LINE L1 6241 6284 -16 9 1728 277 221 13 25 chr5 149889181 149889260 -2647999 - ID4 SINE ID -4 79 2 9 1728 210 143 0 0 chr5 149889816 149889851 -2647408 + (GGA)n Simple_repeat Simple_repeat 1 35 0 9 1728 261 0 0 0 chr5 149889963 149889992 -2647267 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 9 1728 255 268 84 39 chr5 149890061 149890224 -2647035 + B3A SINE B2 1 191 -4 9 1728 373 264 0 0 chr5 149890330 149890417 -2646842 - B3A SINE B2 -87 111 25 9 1728 695 248 0 0 chr5 149891190 149891323 -2645936 + B1_Mur1 SINE Alu 5 137 -12 9 1728 645 14 0 0 chr5 149891327 149891401 -2645858 + (CAAG)n Simple_repeat Simple_repeat 1 74 0 9 1728 767 144 56 0 chr5 149891791 149891916 -2645343 + B1_Mur3 SINE Alu 9 140 -9 9 1728 338 233 0 0 chr5 149891938 149891998 -2645261 - PB1D7 SINE Alu -60 60 1 9 1728 298 325 26 0 chr5 149891998 149892015 -2645244 - ID_B1 SINE B4 -83 141 63 9 1728 893 221 13 92 chr5 149892338 149892567 -2644692 - B3 SINE B2 -4 212 2 9 1728 663 167 31 106 chr5 149892592 149892609 -2644650 - B1_Mur3 SINE Alu 0 149 138 9 1728 657 25 0 0 chr5 149892609 149892688 -2644571 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 9 1728 663 167 31 106 chr5 149892688 149892831 -2644428 - B1_Mur3 SINE Alu -12 137 1 9 1728 440 278 6 94 chr5 149892831 149892847 -2644412 - ID_B1 SINE B4 -12 212 68 9 1728 271 371 28 19 chr5 149893341 149893448 -2643811 + MER121 Unknown Unknown 297 404 -8 9 1728 442 247 0 0 chr5 149893715 149893796 -2643463 + B4A SINE B4 2 82 -210 9 1728 1044 40 27 35 chr5 149893816 149894081 -2643178 + (CA)n Simple_repeat Simple_repeat 1 262 0 9 1728 837 123 14 35 chr5 149894103 149894593 -2642666 + (CA)n Simple_repeat Simple_repeat 1 479 0 9 1728 241 247 20 40 chr5 149894609 149894710 -2642549 + (CATATA)n Simple_repeat Simple_repeat 3 101 0 9 1728 226 188 20 30 chr5 149894754 149894853 -2642406 + (CA)n Simple_repeat Simple_repeat 1 98 0 9 1728 489 34 0 0 chr5 149894862 149894921 -2642338 + (TC)n Simple_repeat Simple_repeat 1 59 0 9 1728 396 0 0 0 chr5 149894921 149894964 -2642295 + (CA)n Simple_repeat Simple_repeat 1 44 0 9 1728 772 212 9 0 chr5 149895019 149895360 -2641899 + (TA)n Simple_repeat Simple_repeat 1 344 0 9 1728 1281 82 32 11 chr5 149895391 149895576 -2641683 + B2_Mm2 SINE B2 2 190 -5 9 1728 434 255 75 0 chr5 149895600 149895706 -2641553 + B3 SINE B2 1 114 -102 9 1728 317 313 73 7 chr5 149896012 149896163 -2641096 - L1MB3 LINE L1 -259 5924 5764 9 1728 778 245 6 0 chr5 149896165 149896324 -2640935 + MTE2b LTR MaLR 1 160 -219 9 1728 333 200 64 43 chr5 149896294 149896388 -2640871 - B1_Mur4 SINE Alu -46 104 9 9 1728 552 205 115 32 chr5 149896399 149896555 -2640704 + MTE2b LTR MaLR 157 325 -54 9 1728 768 121 29 0 chr5 149896556 149896696 -2640563 + (TTTC)n Simple_repeat Simple_repeat 4 147 0 9 1728 981 206 0 4 chr5 149896694 149896959 -2640300 + CT-rich Low_complexity Low_complexity 1 263 0 9 1728 569 132 32 3 chr5 149896959 149897070 -2640189 - B1_Mur3 SINE Alu 0 120 9 9 1728 525 104 0 0 chr5 149897076 149897153 -2640106 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 9 1728 320 180 0 32 chr5 149897154 149897217 -2640042 + MTE2b LTR MaLR 315 375 -4 9 1728 662 228 143 0 chr5 149897321 149897510 -2639749 - ID_B1 SINE B4 -5 219 4 9 1728 298 301 0 37 chr5 149897563 149897664 -2639595 - ID4_ SINE ID -57 95 6 9 1728 2226 87 18 58 chr5 149898536 149898879 -2638380 + ORR1A4 LTR MaLR 1 329 0 9 1728 462 238 38 0 chr5 149898897 149899002 -2638257 - PB1D10 SINE Alu -6 111 3 9 1728 248 250 12 70 chr5 149898925 149899011 -2638248 - B4 SINE B4 -131 161 81 9 1728 604 262 49 24 chr5 149899136 149899300 -2637959 - B3A SINE B2 -30 168 1 9 1728 261 83 0 0 chr5 149899317 149899353 -2637906 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 9 1728 410 327 51 39 chr5 149899371 149899527 -2637732 - RSINE1 SINE B4 -4 161 4 9 1728 414 162 19 9 chr5 149900001 149900066 -2637193 + polypyrimidine Low_complexity Low_complexity 45 110 0 9 1728 861 120 0 0 chr5 149900066 149900199 -2637060 + (TTC)n Simple_repeat Simple_repeat 3 135 0 9 1728 414 162 19 9 chr5 149900199 149900239 -2637020 + polypyrimidine Low_complexity Low_complexity 5 44 0 9 1728 1088 89 0 14 chr5 149900262 149900410 -2636849 - B1_Mus1 SINE Alu 0 148 3 9 1728 1253 219 157 29 chr5 149900959 149901303 -2635956 - MTD LTR MaLR -14 405 18 9 1728 356 278 25 42 chr5 149901806 149901926 -2635333 + RSINE1 SINE B4 4 121 -44 9 1728 381 282 57 109 chr5 149901849 149902024 -2635235 + MT2B LTR ERVL 91 256 -345 9 1728 791 146 35 49 chr5 149901933 149902077 -2635182 + B1_Mur3 SINE Alu 8 149 0 9 1728 515 56 14 0 chr5 149902131 149902202 -2635057 + (CA)n Simple_repeat Simple_repeat 1 72 0 9 1728 1019 84 0 0 chr5 149902448 149902579 -2634680 - B2_Mm2 SINE B2 -64 131 1 9 1728 257 329 37 0 chr5 149903224 149903306 -2633953 - L2a LINE L2 -10 3416 3332 9 1728 234 0 0 0 chr5 149903638 149903664 -2633595 + (TG)n Simple_repeat Simple_repeat 2 27 0 9 1728 536 180 19 29 chr5 149903706 149903809 -2633450 - RSINE1 SINE B4 -61 104 3 9 1728 471 245 29 0 chr5 149903818 149903920 -2633339 - PB1D7 SINE Alu -8 112 8 9 1728 564 234 111 107 chr5 149903968 149904408 -2632851 - RMER10A LTR ERVL 0 442 1 1 1728 1015 65 28 21 chr5 149904451 149904593 -2632666 + B1_Mus1 SINE Alu 6 148 0 1 1728 373 219 72 105 chr5 149904463 149904616 -2632643 + B4A SINE B4 106 253 -39 1 1728 440 260 58 0 chr5 149904974 149905078 -2632181 + PB1D10 SINE Alu 1 110 -7 1 1728 387 306 48 54 chr5 149905138 149905304 -2631955 - MIR SINE MIR -6 256 92 1 1728 2658 104 35 2 chr5 149905491 149905887 -2631372 - MTC LTR MaLR -8 413 5 1 1728 767 244 18 6 chr5 149905883 149906052 -2631207 + B3 SINE B2 46 216 0 1 1728 255 180 148 0 chr5 149906125 149906186 -2631073 - PB1D7 SINE Alu -40 80 11 1 1728 441 0 0 0 chr5 149906806 149906855 -2630404 + (CA)n Simple_repeat Simple_repeat 2 50 0 1 1728 3947 45 19 0 chr5 149908472 149908938 -2628321 + MT2C_Mm LTR ERVL 1 475 0 1 1728 1051 124 6 6 chr5 149909072 149909250 -2628009 + (TTTCC)n Simple_repeat Simple_repeat 3 180 0 1 1728 536 42 14 0 chr5 149909287 149909358 -2627901 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 1 1728 968 158 7 0 chr5 149909359 149909505 -2627754 - B1_Mur4 SINE Alu -2 148 2 1 1728 783 152 18 116 chr5 149910313 149910477 -2626782 + B1_Mur2 SINE Alu 2 149 0 1 1728 546 57 0 0 chr5 149910540 149910610 -2626649 + (GAAA)n Simple_repeat Simple_repeat 1 70 0 1 1728 206 156 22 0 chr5 149910876 149910921 -2626338 + CT-rich Low_complexity Low_complexity 3 48 0 1 1728 296 268 94 14 chr5 149910925 149911038 -2626221 - PB1D10 SINE Alu -28 121 1 1 1728 680 140 97 0 chr5 149911048 149911162 -2626097 - B1_Mur1 SINE Alu 0 149 25 1 1728 25 75 0 0 chr5 149911162 149911215 -2626044 + AT_rich Low_complexity Low_complexity 1 53 0 1 1728 204 227 0 0 chr5 149911248 149911292 -2625967 + (TG)n Simple_repeat Simple_repeat 1 44 0 1 1728 236 221 27 93 chr5 149911292 149911367 -2625892 - RSINE1 SINE B4 -85 80 11 1 1728 735 172 19 58 chr5 149911402 149911556 -2625703 + B1_Mur2 SINE Alu 2 149 0 1 1728 363 264 54 45 chr5 149911644 149911755 -2625504 + PB1D10 SINE Alu 6 117 0 1 1728 590 215 52 30 chr5 149912041 149912175 -2625084 - ID_B1 SINE B4 -5 219 83 1 1728 824 106 29 12 chr5 149912177 149912349 -2624910 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 1 1728 274 151 27 0 chr5 149912371 149912444 -2624815 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 1 1728 263 258 59 29 chr5 149912456 149912524 -2624735 - ID4_ SINE ID -12 71 2 1 1728 258 293 13 26 chr5 149912904 149912981 -2624278 + MIRc SINE MIR 154 229 -39 1 1728 263 326 59 0 chr5 149913306 149913441 -2623818 + L1MA6 LINE L1 5816 5958 -342 1 1728 979 208 43 10 chr5 149913486 149913695 -2623564 + B3 SINE B2 1 216 0 1 1728 313 129 16 31 chr5 149913954 149914018 -2623241 + U2 snRNA snRNA 1 63 -125 1 1728 278 244 110 11 chr5 149914600 149914691 -2622568 + PB1D7 SINE Alu 19 118 -2 1 1728 1205 154 28 24 chr5 149914691 149914904 -2622355 + B3 SINE B2 2 215 -1 1 1728 1554 181 25 31 chr5 149914928 149915252 -2622007 + RCHARR1 DNA MER1_type 539 860 -114 1 1728 985 106 26 82 chr5 149915267 149915462 -2621797 + B2_Mm2 SINE B2 2 185 -10 1 1728 1195 57 0 0 chr5 149915474 149915615 -2621644 + B1_Mus2 SINE Alu 2 142 -5 1 1728 180 0 0 0 chr5 149915616 149915636 -2621623 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1 1728 268 296 131 21 chr5 149915914 149916059 -2621200 + MIRb SINE MIR 108 268 0 1 1728 1242 99 22 16 chr5 149916141 149916325 -2620934 - B2_Mm2 SINE B2 -8 187 3 1 1728 189 0 0 0 chr5 149916376 149916397 -2620862 + (TCCC)n Simple_repeat Simple_repeat 2 22 0 1 1728 500 244 0 57 chr5 149916397 149916519 -2620740 - B1_Mur2 SINE Alu -20 129 15 1 1728 236 281 94 87 chr5 149916624 149916863 -2620396 + MLT1E2 LTR MaLR 3 223 -404 1 1728 470 219 139 25 chr5 149916866 149917067 -2620192 + L1MA6 LINE L1 6072 6295 -5 1 1728 1512 39 11 0 chr5 149917076 149917255 -2620004 + B2_Mm2 SINE B2 1 181 -14 1 1728 339 62 70 5 chr5 149917281 149917385 -2619874 + B2_Mm2 SINE B2 48 195 0 1 1728 343 290 0 29 chr5 149917395 149917498 -2619761 + B4 SINE B4 5 104 -188 1 1728 1163 56 0 27 chr5 149917726 149917863 -2619396 + B1_Mus2 SINE Alu 1 136 -11 1 1728 198 0 0 0 chr5 149917863 149917885 -2619374 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1 1728 237 291 70 43 chr5 149918022 149918137 -2619122 + MLT1E2 LTR MaLR 312 429 -198 1 1728 658 109 9 36 chr5 149918151 149918261 -2618998 + B2_Mm1t SINE B2 33 149 -67 1 1728 394 184 13 13 chr5 149918399 149918476 -2618783 - PB1D10 SINE Alu -1 116 40 1 1728 225 0 0 0 chr5 149918952 149918977 -2618282 + (A)n Simple_repeat Simple_repeat 1 25 0 1 1728 431 246 51 58 chr5 149919016 149919030 -2618229 - ID_B1 SINE B4 -8 216 203 1 1728 330 26 0 0 chr5 149919030 149919069 -2618190 + (TG)n Simple_repeat Simple_repeat 2 40 0 1 1728 674 157 26 9 chr5 149919069 149919185 -2618074 - B1_Mur4 SINE Alu -32 118 1 1 1728 228 100 0 0 chr5 149919211 149919251 -2618008 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 1 1728 36 40 0 0 chr5 149919587 149919637 -2617622 + AT_rich Low_complexity Low_complexity 1 50 0 1 1728 451 188 67 40 chr5 149919638 149919788 -2617471 - Lx4B LINE L1 -1 7057 6904 1 1728 457 259 19 0 chr5 149920140 149920248 -2617011 + PB1D9 SINE Alu 2 111 -9 1 1728 305 248 4 14 chr5 149920561 149920646 -2616613 + PB1D10 SINE Alu 5 73 -44 1 1728 695 160 17 6 chr5 149920761 149920937 -2616322 + (CA)n Simple_repeat Simple_repeat 1 178 0 1 1728 369 0 0 0 chr5 149921221 149921262 -2615997 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1728 224 246 70 0 chr5 149921268 149921325 -2615934 - PB1D7 SINE Alu -12 108 48 1 1728 209 175 150 0 chr5 149921403 149921443 -2615816 + MIRc SINE MIR 37 82 -186 1 1728 630 362 69 7 chr5 149921600 149921889 -2615370 - MER47B DNA MER2_type -97 321 15 1 1728 293 289 198 5 chr5 149922069 149922253 -2615006 - Kanga1b DNA Tc2 -201 578 361 1 1728 548 226 6 102 chr5 149922341 149922518 -2614741 + B3A SINE B2 22 181 -17 1 1728 542 219 198 9 chr5 149922689 149922906 -2614353 - L1MB8 LINE L1 -41 6137 5880 1 1728 213 65 0 0 chr5 149922907 149922938 -2614321 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 1 1728 1054 201 33 14 chr5 149923021 149923233 -2614026 - B3 SINE B2 0 216 1 1 1728 4114 142 52 16 chr5 149923697 149924365 -2612894 - RLTR17 LTR ERVK 0 692 1 1 1728 369 263 71 0 chr5 149924609 149924708 -2612551 - B1F SINE Alu -29 120 15 1 1728 287 345 17 0 chr5 149924708 149924725 -2612534 - ID_B1 SINE B4 -26 198 81 1 1728 884 156 7 33 chr5 149924829 149924981 -2612278 - B1_Mus1 SINE Alu 0 148 1 1 1728 259 297 0 0 chr5 149925351 149925415 -2611844 + GA-rich Low_complexity Low_complexity 2 65 0 1 1728 273 333 147 45 chr5 149925910 149926072 -2611187 - MLT1A LTR MaLR -4 370 179 1 1728 656 70 54 0 chr5 149926072 149926201 -2611058 + (TG)n Simple_repeat Simple_repeat 2 137 0 1 1728 273 333 147 45 chr5 149926201 149926324 -2610935 - MLT1A LTR MaLR -196 178 56 1 1728 503 270 51 161 chr5 149927368 149927721 -2609538 + RMER20B LTR ERVK 234 547 -80 1 1728 240 100 0 0 chr5 149927806 149927846 -2609413 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 1 1728 2319 146 33 35 chr5 149927891 149928402 -2608857 - RLTR31A_Mm LTR ERVK 0 561 1 1 1728 386 275 0 0 chr5 149928471 149928551 -2608708 - ID4_ SINE ID 0 83 4 1 1728 319 102 0 39 chr5 149928572 149928623 -2608636 - B1_Mur4 SINE Alu -2 148 100 1 1728 686 198 6 0 chr5 149928678 149928835 -2608424 + (CA)n Simple_repeat Simple_repeat 1 158 0 1 1728 610 266 69 29 chr5 149928839 149929013 -2608246 - B3 SINE B2 -34 182 2 1 1728 231 283 33 0 chr5 149929108 149929168 -2608091 + MIR SINE MIR 119 180 -82 1 1728 510 46 0 0 chr5 149930458 149930523 -2606736 + (TC)n Simple_repeat Simple_repeat 1 65 0 1 1728 871 122 12 98 chr5 149930723 149930886 -2606373 - B1_Mur4 SINE Alu -1 149 1 1 1728 367 237 183 21 chr5 149931001 149931143 -2606116 + RSINE1 SINE B4 1 165 0 1 1728 708 220 192 0 chr5 149931264 149931441 -2605818 + B3 SINE B2 6 216 0 1 1728 792 141 41 1 chr5 149931461 149931600 -2605659 + B2_Mm2 SINE B2 1 155 -61 1 1728 189 0 0 0 chr5 149931616 149931637 -2605622 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 1 1728 1452 73 0 5 chr5 149931813 149932006 -2605253 + B2_Mm2 SINE B2 1 192 -3 1 1728 609 52 0 0 chr5 149932044 149932121 -2605138 + (GGAA)n Simple_repeat Simple_repeat 2 78 0 1 1728 801 176 127 18 chr5 149932158 149932412 -2604847 - MTD LTR MaLR -115 304 5 1 1728 260 197 0 0 chr5 149932949 149933010 -2604249 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 1 1728 244 196 0 0 chr5 149933058 149933104 -2604155 + C-rich Low_complexity Low_complexity 2 47 0 1 1728 313 317 178 18 chr5 149933228 149933504 -2603755 - L1ME3A LINE L1 -6 6167 5848 1 1728 226 276 33 33 chr5 149933736 149933796 -2603463 - ID4_ SINE ID 0 83 24 1 1728 498 153 27 0 chr5 149933835 149933946 -2603313 + CT-rich Low_complexity Low_complexity 2 115 0 1 1728 216 245 36 36 chr5 149933948 149934003 -2603256 - ID4_ SINE ID -25 58 4 1 1728 501 298 151 59 chr5 149934031 149934150 -2603109 - HAL1 LINE L1 -1202 1305 1181 1 1728 779 203 13 26 chr5 149934150 149934302 -2602957 + B1_Mur4 SINE Alu 1 150 0 1 1728 845 229 75 45 chr5 149934306 149934507 -2602752 - B3 SINE B2 -7 209 3 1 1728 501 298 151 59 chr5 149934507 149934807 -2602452 - HAL1 LINE L1 -1327 1180 844 1 1728 271 220 247 21 chr5 149934958 149935051 -2602208 + PB1D10 SINE Alu 1 114 -3 1 1728 916 295 7 20 chr5 149935606 149935900 -2601359 - B4 SINE B4 0 292 3 1 1728 395 294 127 30 chr5 149935972 149936137 -2601122 + LTR84b LTR ERVL 100 280 -481 1 1728 337 222 28 0 chr5 149936368 149936440 -2600819 + ID2 SINE ID 4 77 -6 1 1728 1352 163 41 188 chr5 149936616 149936697 -2600562 + ORR1D1 LTR MaLR 1 82 -292 1 1728 3126 61 10 2 chr5 149936697 149937094 -2600165 + MTB LTR MaLR 1 400 0 1 1728 1352 163 41 188 chr5 149937094 149937428 -2599831 + ORR1D1 LTR MaLR 83 355 -19 1 1728 468 257 20 27 chr5 149937820 149937968 -2599291 + L1MA5 LINE L1 6119 6265 -35 1 1728 1277 34 0 0 chr5 149937982 149938128 -2599131 + B1_Mus2 SINE Alu 2 147 0 1 1728 279 141 0 0 chr5 149938128 149938192 -2599067 + (A)n Simple_repeat Simple_repeat 1 64 0 1 1728 785 212 0 14 chr5 149938408 149938547 -2598712 + B1_Mur1 SINE Alu 2 138 -11 1 1728 234 0 0 0 chr5 149938580 149938606 -2598653 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1 1728 5017 123 17 0 chr5 149939797 149940522 -2596737 + RMER19A LTR ERVK 1 737 0 1 1728 252 0 0 0 chr5 149940664 149940692 -2596567 + (CTAA)n Simple_repeat Simple_repeat 3 30 0 1 1728 571 185 76 0 chr5 149940724 149940843 -2596416 - B1_Mur4 SINE Alu -20 130 3 1 1728 687 316 100 0 chr5 149940849 149941159 -2596100 + MER2 DNA MER2_type 5 345 0 1 1728 267 298 48 28 chr5 149941255 149941400 -2595859 - L1MC4 LINE L1 -145 7897 7750 1 1728 271 347 58 23 chr5 149941906 149942059 -2595200 + LTR16E2 LTR ERVL 268 426 -142 1 1728 207 0 0 0 chr5 149942059 149942082 -2595177 + (C)n Simple_repeat Simple_repeat 1 23 0 1 1728 271 347 58 23 chr5 149942082 149942099 -2595160 + LTR16E2 LTR ERVL 427 444 -124 1 1728 255 182 0 0 chr5 149942267 149942311 -2594948 + B1_Mur4 SINE Alu 1 44 -106 1 1728 325 241 12 12 chr5 149942913 149942997 -2594262 - PB1D10 SINE Alu -1 116 33 1 1728 1530 32 11 21 chr5 149943193 149943382 -2593877 - B2_Mm1t SINE B2 -5 188 2 1 1728 319 272 132 0 chr5 149943727 149943841 -2593418 - B1F SINE Alu -20 129 1 1 1728 484 220 66 25 chr5 149944423 149944544 -2592715 - B1F SINE Alu -11 138 13 1 1728 396 0 0 0 chr5 149944557 149944601 -2592658 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1 1728 440 337 77 17 chr5 149945020 149945201 -2592058 - ID_B1 SINE B4 -4 220 29 1 1728 261 362 34 47 chr5 149945611 149945759 -2591500 - MER20 DNA MER1_type -40 179 34 1 1729 1232 81 0 0 chr5 149947753 149947914 -2589345 + B2_Mm2 SINE B2 1 161 -34 1 1729 330 26 0 0 chr5 149947914 149947953 -2589306 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1 1729 823 174 0 26 chr5 149948030 149948183 -2589076 - B1_Mur2 SINE Alu 0 149 1 1 1729 270 155 79 52 chr5 149948211 149948293 -2588966 - B1F1 SINE Alu -5 115 27 1 1729 603 248 0 20 chr5 149949422 149949574 -2587685 + B1F SINE Alu 1 149 0 1 1729 1284 75 35 0 chr5 149949660 149949834 -2587425 - B2_Mm1t SINE B2 -10 183 4 1 1729 2204 98 6 66 chr5 149950509 149950858 -2586401 + ORR1A4 LTR MaLR 1 328 -1 1 1729 1021 214 0 83 chr5 149950883 149951112 -2586147 + B3 SINE B2 7 216 0 1 1729 529 167 97 10 chr5 149951433 149951533 -2585726 - PB1D9 SINE Alu 0 120 12 1 1729 339 214 27 72 chr5 149951533 149951644 -2585615 - MER5A1 DNA MER1_type 0 166 61 1 1729 1172 75 0 0 chr5 149951644 149951790 -2585469 - B1_Mm SINE Alu 0 147 2 1 1729 1059 31 0 0 chr5 149951802 149951929 -2585330 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 1 1729 241 296 11 54 chr5 149952050 149952143 -2585116 + MLT1K LTR MaLR 106 194 -401 1 1729 579 319 92 70 chr5 149952465 149952593 -2584666 - MER58B DNA MER1_type -2 339 189 1 1729 302 0 26 0 chr5 149952593 149952631 -2584628 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1 1729 579 319 92 70 chr5 149952631 149952717 -2584542 - MER58B DNA MER1_type -153 188 112 1 1729 1709 26 0 0 chr5 149952717 149952909 -2584350 - B2_Mm1a SINE B2 0 193 2 1 1729 579 319 92 70 chr5 149952909 149953007 -2584252 - MER58B DNA MER1_type -230 111 20 1 1729 483 323 80 6 chr5 149953058 149953220 -2584039 + ORR1E LTR MaLR 1 174 -185 1 1729 650 157 0 0 chr5 149953301 149953409 -2583850 - B1_Mur4 SINE Alu 0 150 43 1 1729 533 266 65 35 chr5 149953696 149953926 -2583333 - CYRA11_Mm Unknown Y-chromosome -209 408 172 1 1729 1207 153 24 10 chr5 149953722 149953927 -2583332 + URR1B DNA MER1_type 18 225 0 1 1729 263 294 39 10 chr5 149954015 149954118 -2583141 + MLT1C LTR MaLR 11 116 -351 1 1729 857 178 14 0 chr5 149954125 149954271 -2582988 - B1_Mus1 SINE Alu 0 148 1 1 1729 703 88 285 49 chr5 149954301 149954445 -2582814 + B2_Mm1t SINE B2 2 179 -14 1 1729 345 127 0 18 chr5 149954458 149954514 -2582745 + B2_Mm2 SINE B2 47 101 -94 1 1729 1180 68 0 0 chr5 149956412 149956558 -2580701 - B1_Mus1 SINE Alu 0 148 3 1 1729 583 228 26 0 chr5 149956666 149956780 -2580479 + RSINE1 SINE B4 11 127 -38 1 1729 3134 87 5 22 chr5 149956843 149957292 -2579967 + L1_Mus3 LINE L1 6194 6634 -4 1 1729 1024 188 45 0 chr5 149957501 149957551 -2579708 - B3 SINE B2 0 216 163 1 1729 333 0 0 0 chr5 149957551 149957588 -2579671 + (TG)n Simple_repeat Simple_repeat 1 37 0 1 1729 1024 188 45 0 chr5 149957588 149957739 -2579520 - B3 SINE B2 -54 162 7 1 1729 198 0 0 0 chr5 149957986 149958008 -2579251 + (TAG)n Simple_repeat Simple_repeat 3 24 0 1 1729 237 65 0 0 chr5 149958075 149958106 -2579153 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1729 331 274 30 30 chr5 149958118 149958250 -2579009 + B1F SINE Alu 18 149 0 1 1729 237 231 152 15 chr5 149958864 149958930 -2578329 - PB1D10 SINE Alu 0 117 43 1 1729 570 259 0 0 chr5 149958941 149959053 -2578206 - PB1D10 SINE Alu 0 117 6 1 1729 240 279 0 16 chr5 149958999 149959061 -2578198 - B4A SINE B4 -148 144 84 1 1729 248 219 206 58 chr5 149959843 149959998 -2577261 - Charlie2b DNA MER1_type -1208 1574 1397 1 1729 926 140 14 7 chr5 149960566 149960710 -2576549 - B1_Mur4 SINE Alu 0 150 6 1 1729 351 0 0 0 chr5 149960754 149960793 -2576466 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1729 230 192 0 37 chr5 149960974 149961028 -2576231 - PB1D7 SINE Alu -64 56 5 1 1729 535 291 51 31 chr5 149961031 149961263 -2575996 + L1MA6 LINE L1 6055 6294 -9 1 1729 405 0 0 0 chr5 149961515 149961569 -2575690 + L1Md_T LINE L1 6529 6582 0 1 1729 1146 88 7 0 chr5 149961582 149961729 -2575530 + B1_Mus1 SINE Alu 1 148 0 1 1729 679 189 25 0 chr5 149961730 149961889 -2575370 + GA-rich Low_complexity Low_complexity 2 164 0 1 1729 784 184 0 42 chr5 149961910 149962052 -2575207 + B1_Mur2 SINE Alu 3 138 -11 1 1729 446 261 97 13 chr5 149962191 149962346 -2574913 + MLT1A LTR MaLR 5 172 -202 1 1729 345 360 160 15 chr5 149962771 149962971 -2574288 + MIR SINE MIR 34 262 0 1 1729 1426 129 24 0 chr5 149962995 149963204 -2574055 - B3 SINE B2 -1 215 2 1 1729 246 62 0 0 chr5 149963622 149963654 -2573605 + (GAA)n Simple_repeat Simple_repeat 2 33 0 1 1729 553 296 157 47 chr5 149963713 149964032 -2573227 + ORR1E LTR MaLR 1 354 -5 1 1729 479 275 48 27 chr5 149964123 149964269 -2572990 + RSINE1 SINE B4 2 150 -15 1 1729 22 0 0 0 chr5 149964930 149964952 -2572307 + AT_rich Low_complexity Low_complexity 1 22 0 1 1729 1230 48 0 0 chr5 149964952 149965098 -2572161 - B1_Mm SINE Alu 0 147 2 1 1729 351 0 0 0 chr5 149965348 149965387 -2571872 + (CA)n Simple_repeat Simple_repeat 1 39 0 1 1729 198 91 0 0 chr5 149965454 149965487 -2571772 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 1 1729 27 49 0 0 chr5 149965694 149965735 -2571524 + AT_rich Low_complexity Low_complexity 1 41 0 1 1729 372 281 0 11 chr5 149966760 149966850 -2570409 + BC1_Mm scRNA scRNA 4 92 -60 1 1729 209 186 0 65 chr5 149968409 149968455 -2568804 - L2b LINE L2 -4 3371 3329 1 1729 224 331 65 36 chr5 149969034 149969172 -2568087 - L4 LINE RTE -814 1215 1074 1 1729 999 65 21 41 chr5 149969534 149969679 -2567580 + B1_Mur4 SINE Alu 9 150 0 1 1729 501 17 0 0 chr5 149969680 149969738 -2567521 + (GAAA)n Simple_repeat Simple_repeat 3 60 0 1 1729 600 14 0 0 chr5 149969738 149969807 -2567452 + (GGGA)n Simple_repeat Simple_repeat 3 71 0 1 1729 901 220 23 32 chr5 149969830 149970046 -2567213 + B3 SINE B2 3 216 0 1 1729 233 359 102 47 chr5 149970188 149970246 -2567013 + L2 LINE L2 2576 2633 -786 1 1729 1486 48 36 21 chr5 149970246 149970438 -2566821 - B2_Mm2 SINE B2 0 195 1 1 1729 233 359 102 47 chr5 149970438 149970849 -2566410 + L2 LINE L2 2634 3070 -349 1 1729 711 179 175 131 chr5 149971292 149971451 -2565808 - B3 SINE B2 -1 215 42 1 1729 1222 48 0 0 chr5 149971451 149971597 -2565662 - B1_Mus2 SINE Alu 0 147 2 1 1729 711 179 175 131 chr5 149971597 149971643 -2565616 - B3 SINE B2 -175 41 1 1 1729 252 356 59 44 chr5 149972272 149972407 -2564852 + MLT1J LTR MaLR 132 268 -244 1 1729 225 309 15 0 chr5 149972404 149972472 -2564787 + MLT1J LTR MaLR 436 504 -8 1 1729 216 311 135 0 chr5 149972964 149973038 -2564221 - PB1D10 SINE Alu -33 84 1 1 1729 943 97 20 14 chr5 149973228 149973374 -2563885 - B1_Mur4 SINE Alu -2 148 2 1 1729 228 292 46 0 chr5 149973404 149973469 -2563790 + MIRc SINE MIR 91 158 -110 1 1729 384 265 71 45 chr5 149973803 149973937 -2563322 - RSINE1 SINE B4 0 165 27 1 1729 2342 105 6 3 chr5 149973937 149974261 -2562998 + ORR1A3 LTR MaLR 2 326 0 1 1729 384 265 71 45 chr5 149974261 149974280 -2562979 - RSINE1 SINE B4 -139 26 8 1 1729 299 270 14 0 chr5 149975132 149975206 -2562053 - ID4 SINE ID -3 80 6 1 1729 465 188 79 0 chr5 149975266 149975367 -2561892 + PB1D10 SINE Alu 1 109 -8 1 1729 644 159 79 8 chr5 149975524 149975651 -2561608 + B1_Mur1 SINE Alu 12 147 -2 1 1729 378 211 84 0 chr5 149975988 149976083 -2561176 + PB1D10 SINE Alu 15 117 0 1 1729 326 160 26 50 chr5 149976130 149976225 -2561034 + PB1D10 SINE Alu 15 118 -2 1 1729 493 179 179 43 chr5 149976277 149976417 -2560842 - RSINE1 SINE B4 -2 163 5 1 1729 842 281 24 27 chr5 149976515 149976808 -2560451 - B4A SINE B4 0 292 1 1 1729 730 212 0 27 chr5 149976966 149977116 -2560143 - B1_Mur1 SINE Alu -1 148 3 1 1729 1167 135 161 0 chr5 149977454 149977647 -2559612 + URR1B DNA MER1_type 2 225 0 1 1729 373 222 29 21 chr5 149977649 149977765 -2559494 + MER3 DNA MER1_type 23 130 -79 1 1729 480 257 0 0 chr5 149977853 149977954 -2559305 - PB1D10 SINE Alu -12 105 5 1 1729 252 289 173 62 chr5 149978017 149978179 -2559080 - B3A SINE B2 -9 189 10 1 1729 601 273 14 0 chr5 149978045 149978184 -2559075 - RSINE1 SINE B4 -19 146 6 1 1729 962 148 7 0 chr5 149978454 149978603 -2558656 - B1_Mur4 SINE Alu 0 150 1 1 1729 26 0 0 0 chr5 149978614 149978640 -2558619 + AT_rich Low_complexity Low_complexity 1 26 0 1 1729 317 240 75 28 chr5 149978644 149978751 -2558508 + Lx4B LINE L1 6946 7057 -1 1 1729 1223 34 0 20 chr5 149979005 149979155 -2558104 + B1_Mus2 SINE Alu 1 147 0 1 1729 363 125 0 0 chr5 149979155 149979227 -2558032 + (A)n Simple_repeat Simple_repeat 1 72 0 1 1729 734 192 8 8 chr5 149979288 149979419 -2557840 + B1_Mur1 SINE Alu 19 149 0 1 1729 627 251 72 10 chr5 149979832 149980025 -2557234 + B3 SINE B2 3 207 -9 1 1729 565 228 81 0 chr5 149980099 149980222 -2557037 + RSINE1 SINE B4 4 136 -29 1 1729 290 292 96 40 chr5 149980668 149980793 -2556466 + L2b LINE L2 3236 3367 -8 1 1729 3162 46 22 27 chr5 149981375 149981777 -2555482 + MTB LTR MaLR 1 400 0 1 1729 609 172 294 0 chr5 149982023 149982186 -2555073 - B3 SINE B2 -1 215 5 1 1729 265 276 116 13 chr5 149982891 149983005 -2554254 + MLT1H1 LTR MaLR 109 251 -328 1 1729 324 250 25 0 chr5 149983029 149983109 -2554150 + ID4_ SINE ID 1 82 -1 1 1729 1024 211 35 0 chr5 149984473 149984487 -2552772 - B3 SINE B2 -9 207 192 1 1729 231 36 0 0 chr5 149984487 149984515 -2552744 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1729 1024 211 35 0 chr5 149984515 149984699 -2552560 - B3 SINE B2 -25 191 3 1 1729 278 229 24 24 chr5 149985277 149985362 -2551897 + (TG)n Simple_repeat Simple_repeat 2 86 0 1 1729 249 217 26 92 chr5 149985732 149985808 -2551451 + ID4_ SINE ID 2 72 -11 1 1729 285 29 0 0 chr5 149985890 149985924 -2551335 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1 1729 1014 112 0 14 chr5 149985938 149986083 -2551176 - B1_Mus2 SINE Alu 0 147 5 1 1729 423 156 192 77 chr5 149986762 149986866 -2550393 - PB1D9 SINE Alu 0 120 5 1 1729 232 257 0 114 chr5 149986797 149986876 -2550383 - B4A SINE B4 -142 150 81 1 1729 229 282 64 0 chr5 149987589 149987667 -2549592 - PB1D10 SINE Alu -20 97 15 1 1729 227 268 68 23 chr5 149987609 149987697 -2549562 - ID_B1 SINE B4 -70 154 63 1 1729 696 331 35 55 chr5 149988444 149988792 -2548467 + MLT1F LTR MaLR 24 364 -184 1 1729 234 23 45 23 chr5 149988824 149988868 -2548391 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 1 1729 865 179 111 45 chr5 149988916 149989115 -2548144 - B3 SINE B2 -4 212 1 1 1729 1038 53 105 0 chr5 149989145 149989278 -2547981 + B1_Mus2 SINE Alu 1 147 0 1 1729 21 36 0 0 chr5 149989278 149989306 -2547953 + AT_rich Low_complexity Low_complexity 1 28 0 1 1729 372 345 162 39 chr5 149989582 149989941 -2547318 + LTR79 LTR ERVL 94 496 -31 1 1729 303 333 47 9 chr5 149990452 149990558 -2546701 - MIR SINE MIR -64 144 35 1 1729 206 204 82 0 chr5 149990545 149990594 -2546665 - MIRb SINE MIR -113 155 103 1 1729 24 32 0 0 chr5 149990858 149990889 -2546370 + AT_rich Low_complexity Low_complexity 1 31 0 1 1729 22 0 0 0 chr5 149991264 149991286 -2545973 + AT_rich Low_complexity Low_complexity 1 22 0 1 1729 211 355 86 60 chr5 149991482 149991599 -2545660 + MIR3 SINE MIR 11 130 -78 1 1729 441 217 103 77 chr5 149991629 149991784 -2545475 + B3A SINE B2 40 198 0 1 1729 805 221 23 6 chr5 149992347 149992520 -2544739 + MTE2a LTR MaLR 204 379 0 1 1729 180 366 69 52 chr5 149992890 149993063 -2544196 - MIR3 SINE MIR -18 190 15 1 1729 380 261 50 21 chr5 149993388 149993529 -2543730 + B1F1 SINE Alu 5 149 0 1 1729 227 229 123 41 chr5 149993550 149993623 -2543636 + ID4_ SINE ID 5 83 0 1 1729 810 286 38 15 chr5 149993878 149994144 -2543115 - B4A SINE B4 -19 273 2 1 1729 326 190 190 0 chr5 149994223 149994302 -2542957 - PB1D10 SINE Alu -23 94 1 1 1729 191 53 0 95 chr5 149995966 149996008 -2541251 + (CCCCCT)n Simple_repeat Simple_repeat 2 39 0 1 1729 194 159 45 0 chr5 149997524 149997568 -2539691 + CT-rich Low_complexity Low_complexity 1 46 0 1 1729 500 241 0 136 chr5 149997570 149997724 -2539535 - B1_Mur1 SINE Alu -13 136 4 1 1729 266 244 85 0 chr5 149998187 149998269 -2538990 - ID_B1 SINE B4 -20 204 116 1 1729 423 207 50 12 chr5 149998381 149998493 -2538766 - B1_Mur4 SINE Alu 0 120 3 1 1729 279 163 0 0 chr5 149998867 149998910 -2538349 + B1_Mus1 SINE Alu 22 64 -84 1 1729 21 36 0 0 chr5 149999509 149999537 -2537722 + AT_rich Low_complexity Low_complexity 1 28 0 1 1729 1009 80 65 7 chr5 150000210 150000348 -2536911 - B1_Mur3 SINE Alu -2 147 2 1 1729 296 270 144 0 chr5 150000856 150000967 -2536292 + MER21B LTR ERV1 107 233 -630 2 1729 3531 163 22 100 chr5 150001240 150002052 -2535207 + RMER6A LTR ERVK 8 756 0 3 1729 234 325 112 0 chr5 150002064 150002144 -2535115 + MER21B LTR ERV1 710 798 -65 2 1729 713 221 109 11 chr5 150002298 150002481 -2534778 - MER2 DNA MER2_type -64 281 81 4 1729 213 279 12 48 chr5 150002848 150002931 -2534328 - L2 LINE L2 -1231 2188 2109 5 1729 1304 139 28 14 chr5 150003141 150003359 -2533900 - URR1B DNA MER1_type -2 223 3 6 1729 947 79 48 0 chr5 150003583 150003709 -2533550 - B1_Mus1 SINE Alu -16 132 1 7 1729 280 255 120 20 chr5 150003802 150003902 -2533357 - PB1D10 SINE Alu -7 110 1 8 1729 692 242 19 85 chr5 150004462 150004674 -2532585 + B3A SINE B2 1 198 0 9 1729 21 0 0 0 chr5 150004709 150004730 -2532529 + AT_rich Low_complexity Low_complexity 1 21 0 1 1729 1105 90 7 0 chr5 150004863 150005008 -2532251 - B1_Mus2 SINE Alu 0 147 2 1 1729 585 292 0 7 chr5 150005045 150005190 -2532069 - B1_Mur3 SINE Alu -5 144 1 1 1729 2478 152 60 35 chr5 150006304 150006817 -2530442 - RLTR11A2 LTR ERVK -1 526 1 1 1729 316 237 0 38 chr5 150006944 150007023 -2530236 - PB1D10 SINE Alu 0 117 42 1 1729 1131 89 0 0 chr5 150007063 150007209 -2530050 + B1_Mus1 SINE Alu 2 147 -1 1 1729 287 274 23 35 chr5 150007280 150007367 -2529892 + B4A SINE B4 3 88 -204 1 1729 419 216 151 0 chr5 150007781 150007920 -2529339 - MER2 DNA MER2_type -98 247 88 1 1729 475 227 14 105 chr5 150008323 150008466 -2528793 - RSINE1 SINE B4 -33 132 3 1 1729 224 250 107 0 chr5 150008655 150008711 -2528548 - RSINE1 SINE B4 -6 159 98 1 1729 472 263 86 59 chr5 150009276 150009462 -2527797 + B3 SINE B2 2 192 -24 2 1729 265 270 95 48 chr5 150011245 150011350 -2525909 - PB1 SINE Alu -1 126 17 2 1729 747 212 7 0 chr5 150011417 150011554 -2525705 + B1_Mur2 SINE Alu 1 138 -11 2 1729 360 64 0 0 chr5 150011554 150011601 -2525658 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2 1729 379 202 31 8 chr5 150011601 150011731 -2525528 + (TA)n Simple_repeat Simple_repeat 2 134 0 2 1729 895 162 0 0 chr5 150011953 150012089 -2525170 + B1_Mur2 SINE Alu 2 137 -12 2 1729 3475 28 0 10 chr5 150012176 150012574 -2524685 + MTA_Mm LTR MaLR 1 394 -2 2 1729 258 310 67 39 chr5 150013721 150013825 -2523434 - PB1D7 SINE Alu -6 114 8 2 1729 201 302 57 23 chr5 150015118 150015206 -2522053 + MIRb SINE MIR 25 115 -153 2 1729 849 165 212 0 chr5 150016223 150016393 -2520866 - B3 SINE B2 -10 206 1 2 1729 203 186 23 0 chr5 150016559 150016602 -2520657 + (TCTG)n Simple_repeat Simple_repeat 4 47 0 3 1729 22 35 0 0 chr5 150017471 150017500 -2519759 + AT_rich Low_complexity Low_complexity 1 29 0 3 1729 449 280 41 41 chr5 150017806 150017929 -2519330 + B1_Mur2 SINE Alu 1 123 -26 3 1729 272 262 78 67 chr5 150018322 150018412 -2518847 - B1F SINE Alu 0 149 59 3 1729 430 289 39 0 chr5 150018544 150018672 -2518587 - B1F SINE Alu -13 136 4 3 1729 183 310 157 20 chr5 150019786 150019888 -2517371 - MER5A DNA MER1_type -2 187 72 3 1729 351 130 13 12 chr5 150020458 150020567 -2516692 - B2_Mm2 SINE B2 -4 191 47 3 1729 1263 109 0 0 chr5 150020627 150020801 -2516458 - B2_Mm2 SINE B2 -21 174 1 3 1729 216 0 0 0 chr5 150021668 150021692 -2515567 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 1729 406 242 118 75 chr5 150021769 150021997 -2515262 - L1MC2 LINE L1 -111 6233 5996 3 1729 540 270 206 4 chr5 150022041 150022279 -2514980 + B4 SINE B4 1 286 -6 4 1729 2859 131 39 6 chr5 150023070 150023537 -2513722 - Lx2 LINE L1 0 6997 6516 4 1729 770 270 143 15 chr5 150023890 150024225 -2513034 - L1MB3 LINE L1 -10 6173 5796 4 1729 315 312 46 131 chr5 150027068 150027374 -2509885 + B4A SINE B4 1 280 -12 4 1729 222 171 0 0 chr5 150027395 150027436 -2509823 + (CA)n Simple_repeat Simple_repeat 2 42 0 4 1729 283 125 0 111 chr5 150027920 150027983 -2509276 - PB1D10 SINE Alu 0 117 62 4 1729 509 230 29 80 chr5 150027931 150028068 -2509191 - ID_B1 SINE B4 -8 216 87 4 1729 507 239 96 97 chr5 150028641 150028904 -2508355 + MER82 DNA MER2_type 167 466 -187 4 1729 378 0 0 0 chr5 150028904 150028946 -2508313 + (TG)n Simple_repeat Simple_repeat 2 43 0 4 1729 324 293 136 48 chr5 150028946 150029029 -2508230 + MER82 DNA MER2_type 467 567 -86 4 1729 506 301 82 47 chr5 150030229 150030735 -2506524 - RMER16-int LTR ERVK -1787 3619 3304 4 1729 180 0 0 0 chr5 150030735 150030755 -2506504 + (TA)n Simple_repeat Simple_repeat 2 21 0 5 1729 506 270 108 47 chr5 150030755 150030820 -2506439 - RMER16-int LTR ERVK -2103 3303 3237 4 1729 992 145 13 103 chr5 150030840 150030939 -2506320 - RLTR9A LTR ERVK -251 186 92 5 1729 1650 31 5 0 chr5 150030939 150031130 -2506129 + B2_Mm1t SINE B2 2 193 0 5 1729 992 117 6 100 chr5 150031130 150031231 -2506028 - RLTR9A LTR ERVK -266 102 1 5 1729 353 266 29 57 chr5 150032293 150032516 -2504743 - IAP-d-int LTR ERVK -3495 3047 2906 5 1729 1244 95 0 6 chr5 150032773 150032943 -2504316 - B2_Mm2 SINE B2 -26 169 1 5 1729 253 242 16 0 chr5 150033340 150033402 -2503857 - IAP-d-int LTR ERVK -5349 1904 1842 5 1729 180 0 0 0 chr5 150034333 150034353 -2502906 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 5 1729 2814 64 141 139 chr5 150034414 150034925 -2502334 - RLTR1B LTR ERV1 0 512 1 5 1729 704 246 146 35 chr5 150035432 150035693 -2501566 + ORR1E LTR MaLR 36 325 -34 5 1729 1482 207 83 120 chr5 150035788 150036320 -2500939 + RLTR18B LTR ERVK 1 512 0 5 1729 2271 96 9 9 chr5 150037223 150037540 -2499719 - ORR1A4 LTR MaLR -8 321 5 5 1729 952 90 33 46 chr5 150038328 150038479 -2498780 + B1_Mur4 SINE Alu 1 149 -1 6 1729 344 141 145 2 chr5 150038700 150038785 -2498474 + B1_Mur4 SINE Alu 51 150 0 6 1729 291 266 349 0 chr5 150038796 150038988 -2498271 - MLT1A LTR MaLR -104 270 1 6 1729 647 302 7 0 chr5 150039066 150039215 -2498044 + RSINE1 SINE B4 6 155 -10 6 1729 227 329 148 83 chr5 150039071 150039240 -2498019 + B3A SINE B2 10 189 -9 6 1729 388 217 20 2 chr5 150039303 150039390 -2497869 + PB1D10 SINE Alu 4 100 -214 6 1729 357 232 28 21 chr5 150039478 150039596 -2497663 - MER3 DNA MER1_type -79 130 21 6 1729 835 166 203 0 chr5 150039596 150039783 -2497476 - URR1A DNA MER1_type 0 226 2 6 1729 442 246 9 18 chr5 150039902 150040014 -2497245 - PB1D9 SINE Alu -9 111 1 6 1729 234 184 0 0 chr5 150040252 150040328 -2496931 + T-rich Low_complexity Low_complexity 1 76 0 6 1729 676 13 0 0 chr5 150040573 150040650 -2496609 - tRNA-Asn-AAC tRNA tRNA 0 77 1 7 1729 372 152 32 21 chr5 150041239 150041333 -2495926 + GA-rich Low_complexity Low_complexity 2 96 0 7 1729 25 31 0 0 chr5 150041471 150041503 -2495756 + AT_rich Low_complexity Low_complexity 1 32 0 7 1729 570 228 37 37 chr5 150041622 150041813 -2495446 - B3A SINE B2 -7 191 1 7 1729 424 342 63 30 chr5 150041880 150042148 -2495111 - L1MB2 LINE L1 -146 6025 5749 7 1729 1248 115 120 26 chr5 150042387 150042547 -2494712 - RLTR15 LTR ERVK -104 255 75 7 1729 3498 36 35 9 chr5 150042547 150042972 -2494287 + RLTR10C LTR ERVK 1 436 0 7 1729 1248 115 120 26 chr5 150042972 150043044 -2494215 - RLTR15 LTR ERVK -285 74 1 7 1729 285 213 0 47 chr5 150043044 150043099 -2494160 + MTEa LTR MaLR 328 379 0 7 1729 423 221 62 14 chr5 150044215 150044388 -2492871 - B3 SINE B2 0 216 7 7 1729 627 181 83 42 chr5 150044624 150044768 -2492491 - B3 SINE B2 -66 150 1 7 1729 477 0 0 0 chr5 150045124 150045177 -2492082 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1729 299 389 33 20 chr5 150045348 150045500 -2491759 + MIRb SINE MIR 115 268 0 8 1729 312 319 0 0 chr5 150045804 150045824 -2491435 - ID4 SINE ID -58 94 1 8 1729 318 270 14 0 chr5 150045824 150045898 -2491361 - ID SINE ID -149 75 1 8 1729 211 376 0 66 chr5 150045962 150046053 -2491206 - B4A SINE B4 -147 145 61 8 1729 910 167 14 0 chr5 150046242 150046386 -2490873 - B1_Mur3 SINE Alu -1 148 3 8 1729 389 252 0 105 chr5 150046276 150046400 -2490859 - MT2B LTR ERVL -337 264 154 8 1729 280 273 50 31 chr5 150046281 150046440 -2490819 - ORR1B1-int LTR MaLR -755 754 593 8 1729 841 329 102 3 chr5 150046735 150047107 -2490152 + MLT1F LTR MaLR 88 496 -52 8 1729 350 246 107 107 chr5 150047150 150047269 -2489990 - B2_Mm2 SINE B2 -3 192 81 8 1729 423 0 0 0 chr5 150047269 150047316 -2489943 + (TG)n Simple_repeat Simple_repeat 1 47 0 9 1729 350 246 107 107 chr5 150047316 150047383 -2489876 - B2_Mm2 SINE B2 -115 80 8 8 1729 351 309 10 10 chr5 150047365 150047463 -2489796 + MLT1H2 LTR MaLR 389 486 -3 9 1729 1269 100 22 16 chr5 150047856 150048039 -2489220 - B2_Mm2 SINE B2 -10 185 2 9 1729 242 179 0 18 chr5 150048063 150048120 -2489139 + C-rich Low_complexity Low_complexity 6 61 0 9 1729 595 265 25 68 chr5 150048122 150048284 -2488975 - B3A SINE B2 -42 156 2 9 1729 225 256 63 95 chr5 150048399 150048494 -2488765 - MLT1A1 LTR MaLR -66 342 251 9 1729 282 287 75 30 chr5 150049629 150049762 -2487497 + ORR1E LTR MaLR 59 197 -162 9 1729 197 256 83 104 chr5 150050152 150050248 -2487011 + MIR SINE MIR 38 131 -131 9 1729 763 192 6 6 chr5 150050653 150050831 -2486428 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 9 1729 207 244 0 0 chr5 150050831 150050872 -2486387 + (CCCA)n Simple_repeat Simple_repeat 1 41 0 9 1729 568 225 6 6 chr5 150050875 150051036 -2486223 + (TCCA)n Simple_repeat Simple_repeat 4 164 0 1 1729 267 31 0 0 chr5 150051059 150051091 -2486168 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 1 1729 617 149 46 18 chr5 150051172 150051281 -2485978 - B1_Mur2 SINE Alu -19 130 19 1 1729 253 330 8 113 chr5 150051173 150051306 -2485953 - MT2B LTR ERVL -326 275 157 1 1729 423 0 0 0 chr5 150052072 150052119 -2485140 + (TG)n Simple_repeat Simple_repeat 2 48 0 1 1729 1192 103 5 61 chr5 150052267 150052464 -2484795 + B2_Mm2 SINE B2 2 187 -8 1 1729 1120 201 228 7 chr5 150052822 150053098 -2484161 - ORR1D2 LTR MaLR 0 370 34 1 1729 2292 119 3 9 chr5 150053437 150053768 -2483491 + ORR1A4 LTR MaLR 1 329 0 1 1729 963 224 57 5 chr5 150055572 150055765 -2481494 + B3 SINE B2 11 213 -3 1 1729 279 0 0 0 chr5 150055843 150055874 -2481385 + (CA)n Simple_repeat Simple_repeat 2 32 0 1 1729 528 359 57 64 chr5 150056677 150056975 -2480284 - MLT1C LTR MaLR -54 413 118 1 1729 599 275 124 94 chr5 150056972 150057173 -2480086 - B3 SINE B2 0 216 10 1 1729 183 80 0 0 chr5 150057393 150057418 -2479841 + (T)n Simple_repeat Simple_repeat 1 25 0 1 1729 408 163 28 28 chr5 150058055 150058200 -2479059 + (CCA)n Simple_repeat Simple_repeat 3 147 0 1 1729 263 206 0 27 chr5 150058209 150058284 -2478975 + CT-rich Low_complexity Low_complexity 3 75 0 1 1729 424 196 121 20 chr5 150058492 150058591 -2478668 - PB1D10 SINE Alu -7 110 2 1 1729 192 40 0 0 chr5 150058965 150058990 -2478269 + (C)n Simple_repeat Simple_repeat 1 25 0 1 1729 2344 84 22 3 chr5 150059508 150059820 -2477439 - 7SLRNA srpRNA srpRNA -2 318 1 1 1729 1109 89 0 0 chr5 150060220 150060366 -2476893 - B1_Mus2 SINE Alu 0 147 2 1 1729 215 388 6 38 chr5 150060413 150060571 -2476688 + MIRb SINE MIR 116 268 0 1 1729 3197 55 2 17 chr5 150061191 150061597 -2475662 - MTB LTR MaLR 0 400 1 1 1729 376 294 0 0 chr5 150061712 150061804 -2475455 - MER5B DNA MER1_type 0 178 87 1 1729 335 41 0 20 chr5 150061843 150061893 -2475366 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1 1729 185 65 0 31 chr5 150062628 150062660 -2474599 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1 1729 936 135 0 0 chr5 150062660 150062793 -2474466 - B1_Mur4 SINE Alu -11 139 7 1 1729 372 307 54 81 chr5 150062793 150062809 -2474450 - B4A SINE B4 -76 216 72 1 1729 245 228 57 16 chr5 150063141 150063218 -2474041 + MIR SINE MIR 114 197 -71 1 1729 595 254 68 36 chr5 150063381 150063573 -2473686 - B3A SINE B2 0 198 1 1 1729 322 289 0 12 chr5 150063736 150063820 -2473439 + B3 SINE B2 60 142 -74 1 1729 357 164 0 53 chr5 150063824 150063901 -2473358 - B3 SINE B2 -94 104 35 1 1729 1256 124 54 50 chr5 150064045 150064071 -2473188 + URR1A DNA MER1_type 5 30 -196 1 1729 315 0 0 0 chr5 150064071 150064106 -2473153 + (TG)n Simple_repeat Simple_repeat 2 36 0 1 1729 1256 124 54 50 chr5 150064106 150064300 -2472959 + URR1A DNA MER1_type 31 224 -2 1 1729 502 245 49 0 chr5 150064370 150064472 -2472787 - B1F2 SINE Alu -13 136 30 1 1729 652 235 20 66 chr5 150065052 150065096 -2472163 - B3 SINE B2 -4 212 170 1 1729 228 67 0 0 chr5 150065096 150065126 -2472133 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1 1729 652 235 20 66 chr5 150065126 150065277 -2471982 - B3 SINE B2 -47 169 27 1 1729 247 170 57 19 chr5 150065991 150066052 -2471207 - ORR1E LTR MaLR 0 419 300 1 1729 392 311 20 0 chr5 150066112 150066263 -2470996 + (CA)n Simple_repeat Simple_repeat 1 154 0 1 1729 201 74 0 0 chr5 150066282 150066309 -2470950 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 1 1729 1395 248 105 18 chr5 150066341 150066789 -2470470 - RMER5 LTR ERV1 -5 529 43 1 1729 1228 75 98 0 chr5 150066919 150067093 -2470166 + B2_Mm2 SINE B2 2 192 -3 1 1729 790 282 133 37 chr5 150067093 150067476 -2469783 - L1ME2 LINE L1 -75 6089 5670 1 1729 515 174 7 0 chr5 150067652 150067801 -2469458 + GA-rich Low_complexity Low_complexity 1 150 0 1 1729 377 296 18 36 chr5 150067824 150067989 -2469270 + ERVL-E-int LTR ERVL 2935 3096 -2571 1 1729 467 160 11 0 chr5 150068321 150068415 -2468844 + CT-rich Low_complexity Low_complexity 3 97 0 1 1729 567 287 101 12 chr5 150068415 150068446 -2468813 - Lx8 LINE L1 -115 7358 7326 1 1729 1341 80 129 10 chr5 150068446 150068647 -2468612 - URR1B DNA MER1_type 0 225 1 1 1729 567 287 101 12 chr5 150068647 150068862 -2468397 - Lx8 LINE L1 -148 7325 7090 1 1729 890 199 0 0 chr5 150068901 150069047 -2468212 - B1_Mur4 SINE Alu -4 146 1 1 1729 396 0 0 0 chr5 150070029 150070073 -2467186 + (TG)n Simple_repeat Simple_repeat 2 45 0 1 1729 1775 137 78 36 chr5 150070075 150070462 -2466797 - RMER17C LTR ERVK 0 410 8 1 1729 286 200 0 0 chr5 150070588 150070638 -2466621 - B3A SINE B2 -109 89 40 1 1729 342 265 12 12 chr5 150071391 150071475 -2465784 + B3A SINE B2 39 122 -76 1 1729 446 0 19 0 chr5 150071486 150071540 -2465719 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1729 203 61 30 0 chr5 150071540 150071573 -2465686 + (GA)n Simple_repeat Simple_repeat 1 34 0 1 1729 990 231 0 29 chr5 150071587 150071796 -2465463 + B3 SINE B2 2 204 -12 1 1729 330 258 399 76 chr5 150071850 150072021 -2465238 + B4 SINE B4 1 226 -66 1 1729 724 273 37 21 chr5 150072031 150072218 -2465041 + B3A SINE B2 9 198 0 1 1729 308 228 18 0 chr5 150072222 150072279 -2464980 + B4 SINE B4 221 278 -14 1 1729 630 205 48 66 chr5 150072468 150072635 -2464624 + B2_Mm2 SINE B2 7 170 -25 1 1729 21 0 0 0 chr5 150072669 150072690 -2464569 + AT_rich Low_complexity Low_complexity 1 21 0 1 1729 749 209 8 0 chr5 150072771 150072905 -2464354 + B1_Mur2 SINE Alu 2 136 -13 1 1729 993 134 0 0 chr5 150073203 150073345 -2463914 - B3 SINE B2 -73 143 2 1 1729 690 299 130 50 chr5 150073457 150073884 -2463375 + MLT2B1 LTR ERVL 1 465 -55 1 1729 381 247 170 6 chr5 150074239 150074410 -2462849 - Lx9 LINE L1 -27 7617 7419 1 1729 645 180 6 28 chr5 150074445 150074622 -2462637 + (TA)n Simple_repeat Simple_repeat 1 173 0 1 1729 402 21 0 0 chr5 150074622 150074669 -2462590 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 1 1729 326 236 221 7 chr5 150074692 150074841 -2462418 - Lx9 LINE L1 -292 7352 7172 1 1729 819 188 273 0 chr5 150075016 150075181 -2462078 - B3 SINE B2 -6 210 1 1 1729 1099 242 35 18 chr5 150075277 150075563 -2461696 - B4 SINE B4 -1 291 1 1 1729 906 164 0 0 chr5 150075631 150075796 -2461463 + (TCCA)n Simple_repeat Simple_repeat 2 166 0 1 1729 220 207 17 33 chr5 150075914 150075974 -2461285 + T-rich Low_complexity Low_complexity 2 60 0 1 1729 286 282 6 6 chr5 150076196 150076367 -2460892 + GA-rich Low_complexity Low_complexity 3 173 0 1 1729 398 231 17 11 chr5 150076378 150076553 -2460706 + GA-rich Low_complexity Low_complexity 3 178 0 1 1729 249 312 12 0 chr5 150077245 150077325 -2459934 - ID4_ SINE ID 0 83 3 1 1729 468 0 0 0 chr5 150077342 150077394 -2459865 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 216 396 55 0 0 chr5 150077394 150077449 -2459810 + (TCTG)n Simple_repeat Simple_repeat 3 57 0 1 1730 1060 180 45 20 chr5 150077469 150077667 -2459592 - URR1B DNA MER1_type -7 218 16 1 1730 322 146 41 10 chr5 150077675 150077772 -2459487 + (TCTA)n Simple_repeat Simple_repeat 2 101 0 1 1730 456 111 0 0 chr5 150077807 150077879 -2459380 + (CA)n Simple_repeat Simple_repeat 2 73 0 1 1730 536 0 16 0 chr5 150077888 150077952 -2459307 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1 1730 2704 110 35 7 chr5 150079440 150079844 -2457415 + MTC LTR MaLR 1 415 -6 1 1730 640 300 81 31 chr5 150079890 150080148 -2457111 + Tigger5 DNA MER2_type 2136 2406 0 1 1730 1042 144 152 15 chr5 150080342 150080540 -2456719 + URR1B DNA MER1_type 1 225 0 1 1730 351 202 0 0 chr5 150081760 150081884 -2455375 + GA-rich Low_complexity Low_complexity 1 124 0 1 1730 618 182 0 0 chr5 150081911 150082070 -2455189 + GA-rich Low_complexity Low_complexity 2 160 0 1 1730 210 320 0 0 chr5 150082070 150082120 -2455139 + ID SINE ID 7 56 -168 1 1730 664 107 18 0 chr5 150082419 150082531 -2454728 + (TC)n Simple_repeat Simple_repeat 1 114 0 1 1730 666 260 27 91 chr5 150082551 150082771 -2454488 - ID_B1 SINE B4 -18 206 1 1 1730 852 234 51 20 chr5 150082943 150083139 -2454120 + B3 SINE B2 1 202 -14 1 1730 234 306 79 122 chr5 150083283 150083447 -2453812 + L2b LINE L2 2994 3150 -225 1 1730 1053 67 0 0 chr5 150083583 150083718 -2453541 - B1_Mur4 SINE Alu -8 142 8 1 1730 432 0 0 0 chr5 150083906 150083954 -2453305 + (TC)n Simple_repeat Simple_repeat 1 48 0 1 1730 192 77 0 0 chr5 150085297 150085323 -2451936 + (GAA)n Simple_repeat Simple_repeat 1 26 0 1 1730 189 0 0 0 chr5 150085670 150085691 -2451568 + (TTTCC)n Simple_repeat Simple_repeat 1 21 0 1 1730 1341 68 0 0 chr5 150085693 150085870 -2451389 + (TCTCC)n Simple_repeat Simple_repeat 2 178 0 1 1730 765 0 0 0 chr5 150085879 150085964 -2451295 + (TTTC)n Simple_repeat Simple_repeat 1 85 0 1 1730 321 298 31 21 chr5 150085973 150086069 -2451190 - B1F2 SINE Alu -52 97 1 1 1730 364 240 48 122 chr5 150086248 150086395 -2450864 - MT2B LTR ERVL -299 302 167 1 1730 608 155 0 28 chr5 150086291 150086397 -2450862 - B1_Mur4 SINE Alu -47 103 1 1 1730 1077 205 19 5 chr5 150086791 150087002 -2450257 - B3 SINE B2 -1 215 2 1 1730 566 220 241 110 chr5 150088363 150088608 -2448651 + B4A SINE B4 2 278 -14 1 1730 376 358 56 6 chr5 150089084 150089264 -2447995 - MER5A DNA MER1_type 0 189 1 1 1730 186 71 0 0 chr5 150089837 150089865 -2447394 + (TC)n Simple_repeat Simple_repeat 1 28 0 1 1730 513 32 0 0 chr5 150089865 150089928 -2447331 + (TG)n Simple_repeat Simple_repeat 2 64 0 1 1730 708 301 6 0 chr5 150089930 150090093 -2447166 - B3A SINE B2 -34 164 1 1 1730 694 284 57 28 chr5 150090114 150090397 -2446862 + MLT1D LTR MaLR 208 498 -7 1 1730 850 239 5 15 chr5 150091800 150092000 -2445259 + B3A SINE B2 1 198 0 2 1730 911 120 0 0 chr5 150092014 150092139 -2445120 + B1_Mus2 SINE Alu 13 137 -10 2 1730 732 80 100 0 chr5 150092703 150092803 -2444456 - 5S rRNA rRNA -11 110 1 2 1730 1291 146 27 9 chr5 150092823 150093044 -2444215 - URR1B DNA MER1_type 0 225 1 2 1730 717 102 0 0 chr5 150093331 150093439 -2443820 + (TCC)n Simple_repeat Simple_repeat 1 108 0 2 1730 369 252 50 71 chr5 150093451 150093491 -2443768 - B1_Mur2 SINE Alu -6 143 110 2 1730 641 204 147 37 chr5 150093491 150093654 -2443605 - B3A SINE B2 -16 182 2 2 1730 491 173 35 6 chr5 150093654 150093754 -2443505 - PB1D10 SINE Alu -40 109 6 2 1730 342 236 27 88 chr5 150093667 150093827 -2443432 - ID_B1 SINE B4 -48 176 33 2 1730 2118 126 25 16 chr5 150093948 150094271 -2442988 + ORR1A2 LTR MaLR 2 327 0 2 1730 900 280 75 38 chr5 150094327 150094620 -2442639 - MTE2a LTR MaLR -58 321 18 2 1730 1194 165 55 5 chr5 150094664 150094865 -2442394 + B3 SINE B2 6 216 0 2 1730 2049 213 10 5 chr5 150096359 150096774 -2440485 + MTD LTR MaLR 3 419 0 2 1730 291 280 125 59 chr5 150097879 150098031 -2439228 - MER5A1 DNA MER1_type -4 162 1 2 1730 458 125 12 0 chr5 150098474 150098554 -2438705 + (GGGGA)n Simple_repeat Simple_repeat 5 85 0 2 1730 382 188 21 0 chr5 150100132 150100228 -2437031 + (TA)n Simple_repeat Simple_repeat 1 98 0 2 1730 30 27 0 0 chr5 150100237 150100274 -2436985 + AT_rich Low_complexity Low_complexity 1 37 0 2 1730 236 155 48 21 chr5 150100288 150100433 -2436826 + (TA)n Simple_repeat Simple_repeat 1 149 0 2 1730 1568 171 101 16 chr5 150100434 150100847 -2436412 - MT2A LTR ERVL -40 493 9 2 1730 422 253 0 6 chr5 150101071 150101246 -2436013 + (CA)n Simple_repeat Simple_repeat 1 174 0 2 1730 416 253 0 6 chr5 150101287 150101454 -2435805 + (CA)n Simple_repeat Simple_repeat 1 166 0 2 1730 383 250 187 15 chr5 150101501 150101704 -2435555 - L1MA4 LINE L1 -382 5918 5681 2 1730 200 176 58 14 chr5 150101772 150101841 -2435418 + (TA)n Simple_repeat Simple_repeat 2 73 0 2 1730 297 0 0 0 chr5 150101841 150101874 -2435385 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 1730 266 315 9 27 chr5 150101907 150102018 -2435241 - L1MA4 LINE L1 -769 5531 5423 2 1730 454 301 85 14 chr5 150102053 150102301 -2434958 - L1_Mur3 LINE L1 -469 5408 5145 2 1730 210 184 0 20 chr5 150102301 150102351 -2434908 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 1730 298 298 31 39 chr5 150102417 150102546 -2434713 - L1MA4 LINE L1 -1936 4207 4080 2 1730 1189 218 23 8 chr5 150102546 150102809 -2434450 + ORR1D1 LTR MaLR 1 267 -107 2 1730 474 195 168 56 chr5 150102905 150103084 -2434175 - RMER21B LTR ERV1 -332 510 312 2 1730 260 323 10 29 chr5 150103109 150103211 -2434048 - RMER21B LTR ERV1 -649 193 94 2 1730 691 179 28 33 chr5 150103316 150103469 -2433790 + ORR1C2 LTR MaLR 188 384 0 2 1730 1203 296 52 48 chr5 150103469 150104129 -2433130 - L1MA4 LINE L1 -2059 4081 3420 2 1730 189 0 0 0 chr5 150104462 150104483 -2432776 + (GTTTG)n Simple_repeat Simple_repeat 2 22 0 2 1730 280 321 0 54 chr5 150104487 150104599 -2432660 - ORR1E LTR MaLR -77 302 197 2 1730 652 251 67 6 chr5 150104622 150104802 -2432457 - ORR1E LTR MaLR -168 191 1 2 1730 240 260 26 159 chr5 150105027 150105297 -2431962 + Charlie5 DNA MER1_type 2357 2590 -34 2 1730 690 259 25 69 chr5 150105294 150105341 -2431918 - B3 SINE B2 -8 208 164 2 1730 597 28 0 0 chr5 150105341 150105412 -2431847 + (TG)n Simple_repeat Simple_repeat 1 71 0 2 1730 690 259 25 69 chr5 150105412 150105567 -2431692 - B3 SINE B2 -53 163 15 2 1730 2445 137 160 63 chr5 150106146 150106670 -2430589 - RMER15 LTR ERVL 0 575 1 2 1730 239 239 0 66 chr5 150106808 150106884 -2430375 - ORR1E LTR MaLR -73 306 236 2 1730 1067 123 0 0 chr5 150106920 150107070 -2430189 - URR1A DNA MER1_type -1 225 76 2 1730 1921 138 31 25 chr5 150107070 150107397 -2429862 - ORR1A4 LTR MaLR 0 329 1 2 1730 321 206 235 0 chr5 150107397 150107461 -2429798 - URR1A DNA MER1_type -146 80 1 2 1730 419 311 68 53 chr5 150107471 150107661 -2429598 - ORR1E LTR MaLR -166 193 1 2 1730 924 249 47 130 chr5 150107766 150108105 -2429154 + MTD LTR MaLR 103 404 -15 2 1730 472 259 13 90 chr5 150109001 150109025 -2428234 + RMER17C LTR ERVK 183 203 -606 2 1730 665 226 7 280 chr5 150109025 150109296 -2427963 + B3 SINE B2 1 197 -19 2 1730 1563 193 84 14 chr5 150109296 150109486 -2427773 + RMER17C LTR ERVK 1 213 -197 2 1730 597 28 0 0 chr5 150109486 150109557 -2427702 + (TC)n Simple_repeat Simple_repeat 2 72 0 2 1730 1563 192 85 14 chr5 150109557 150109732 -2427527 + RMER17C LTR ERVK 214 390 -20 2 1730 31 58 0 0 chr5 150109750 150109802 -2427457 + AT_rich Low_complexity Low_complexity 1 52 0 2 1730 387 60 0 0 chr5 150110145 150110195 -2427064 + (TATTG)n Simple_repeat Simple_repeat 5 54 0 2 1730 749 235 17 12 chr5 150115200 150115372 -2421887 - B3A SINE B2 -24 174 2 2 1730 3292 246 84 7 chr5 150116334 150117204 -2420055 - RCHARR1 DNA MER1_type -15 959 23 2 1730 344 160 298 0 chr5 150117670 150117764 -2419495 + B1F SINE Alu 19 140 -9 2 1730 1152 186 77 42 chr5 150117850 150118137 -2419122 - ORR1D1 LTR MaLR -67 307 11 2 1730 285 53 0 0 chr5 150119085 150119123 -2418136 + ORR1B1 LTR MaLR 351 388 -6 2 1730 1019 226 138 40 chr5 150119136 150119463 -2417796 - ORR1E LTR MaLR 0 359 1 2 1730 430 289 51 13 chr5 150121802 150121960 -2415299 - RMER15 LTR ERVL -7 568 405 2 1730 768 188 55 10 chr5 150121966 150122148 -2415111 + RMER17C LTR ERVK 1 192 -218 2 1730 291 28 0 0 chr5 150122148 150122184 -2415075 + (TC)n Simple_repeat Simple_repeat 2 37 0 2 1730 768 188 55 10 chr5 150122184 150122200 -2415059 + RMER17C LTR ERVK 193 208 -202 2 1730 452 238 17 56 chr5 150123851 150123941 -2413318 + RMER17C LTR ERVK 1 84 -326 2 1730 450 0 0 0 chr5 150123941 150123991 -2413268 + (TC)n Simple_repeat Simple_repeat 1 50 0 2 1730 452 238 17 56 chr5 150123991 150124035 -2413224 + RMER17C LTR ERVK 85 128 -282 2 1730 1079 129 0 6 chr5 150124035 150124214 -2413045 + (TCTCC)n Simple_repeat Simple_repeat 1 178 0 2 1730 452 280 49 58 chr5 150124214 150124410 -2412849 + RMER17C LTR ERVK 129 376 -34 2 1730 638 243 166 13 chr5 150125420 150125649 -2411610 + RMER20B LTR ERVK 234 497 -130 2 1730 250 324 19 19 chr5 150125925 150126029 -2411230 + RMER20B LTR ERVK 499 602 -25 2 1730 1291 68 17 0 chr5 150126074 150126250 -2411009 + B2_Mm1t SINE B2 1 179 -14 2 1730 391 46 389 9 chr5 150126310 150126418 -2410841 + B2_Mm2 SINE B2 47 195 0 2 1730 239 259 0 17 chr5 150126462 150126521 -2410738 + MTEa LTR MaLR 13 70 -309 2 1730 371 43 0 68 chr5 150126676 150126750 -2410509 + (AGGGGG)n Simple_repeat Simple_repeat 5 73 0 2 1730 621 243 107 23 chr5 150127006 150127221 -2410038 + MTEa LTR MaLR 147 379 0 2 1730 1819 132 71 51 chr5 150127845 150128196 -2409063 - MTC LTR MaLR -63 358 1 2 1730 480 205 143 0 chr5 150128209 150128321 -2408938 + MTEb LTR MaLR 4 131 -248 2 1730 3112 11 0 0 chr5 150129356 150129730 -2407529 - MT2_Mm LTR ERVL -119 374 1 2 1730 225 252 33 83 chr5 150129730 150129759 -2407500 - ORR1A3-int LTR MaLR -1350 613 591 2 1730 361 179 46 35 chr5 150129768 150129855 -2407404 - ORR1A3-int LTR MaLR -1323 640 553 2 1730 3326 22 0 0 chr5 150129855 150130255 -2407004 - MERVL-int LTR ERVL -125 5360 4961 2 1730 542 318 280 18 chr5 150130401 150130691 -2406568 - MLT1D LTR MaLR -117 388 23 2 1730 241 219 0 0 chr5 150130706 150130747 -2406512 + 5S rRNA rRNA 1 41 -80 2 1730 681 214 20 14 chr5 150131588 150131735 -2405524 - B1F2 SINE Alu 0 149 2 2 1730 236 286 15 3 chr5 150131975 150132050 -2405209 + MIRc SINE MIR 54 131 -137 2 1730 207 162 0 0 chr5 150132885 150132922 -2404337 + (TATG)n Simple_repeat Simple_repeat 4 40 0 2 1730 803 129 34 29 chr5 150132943 150133118 -2404141 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 2 1730 749 183 3 6 chr5 150133505 150133842 -2403417 + (CA)n Simple_repeat Simple_repeat 1 335 0 2 1730 383 164 157 10 chr5 150135180 150135292 -2401967 + PB1D10 SINE Alu 3 127 -22 2 1730 313 272 21 42 chr5 150135655 150135751 -2401508 + PB1D10 SINE Alu 12 105 -12 2 1730 348 24 0 0 chr5 150135752 150135793 -2401466 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 2 1730 816 189 0 32 chr5 150136130 150136288 -2400971 - RLTR41 LTR ERV1 0 446 294 2 1730 396 82 33 0 chr5 150136302 150136363 -2400896 - RLTR41 LTR ERV1 -383 63 1 2 1730 737 194 70 19 chr5 150136363 150136521 -2400738 - B3 SINE B2 -49 167 2 2 1730 1225 142 64 0 chr5 150136617 150136835 -2400424 + ORR1B1 LTR MaLR 1 232 -162 2 1730 585 0 0 0 chr5 150136835 150136900 -2400359 + (GA)n Simple_repeat Simple_repeat 2 66 0 2 1730 256 326 47 0 chr5 150137429 150137515 -2399744 - L4 LINE RTE -4 2025 1936 2 1730 784 201 11 54 chr5 150137874 150138058 -2399201 - B3 SINE B2 0 216 41 2 1730 297 314 94 7 chr5 150140181 150140319 -2396940 - MIR SINE MIR -69 193 44 2 1730 544 272 13 39 chr5 150141747 150141824 -2395435 - B4A SINE B4 -7 285 212 2 1730 1036 207 14 0 chr5 150141824 150142032 -2395227 - B3 SINE B2 -5 211 1 2 1730 544 272 13 39 chr5 150142032 150142107 -2395152 - B4A SINE B4 -81 211 137 2 1730 180 111 0 0 chr5 150142225 150142252 -2395007 - L2 LINE L2 -364 3055 3029 2 1730 432 97 343 19 chr5 150142435 150142540 -2394719 - B2_Mm2 SINE B2 -10 185 47 2 1730 1222 115 6 0 chr5 150142569 150142751 -2394508 - B2_Mm2 SINE B2 -12 183 1 2 1730 890 90 15 0 chr5 150143499 150143632 -2393627 + (GAGAA)n Simple_repeat Simple_repeat 5 139 0 2 1730 798 202 0 0 chr5 150143733 150143911 -2393348 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 2 1730 437 332 55 91 chr5 150143966 150144327 -2392932 - ORR1E LTR MaLR -11 348 1 2 1730 187 167 36 18 chr5 150144486 150144541 -2392718 - L2c LINE L2 -294 3093 3038 2 1730 2162 130 76 5 chr5 150144596 150144966 -2392293 - MTC LTR MaLR -13 408 13 2 1730 317 282 88 104 chr5 150145032 150145214 -2392045 + MTE2a LTR MaLR 15 193 -186 2 1730 629 208 11 11 chr5 150145263 150145443 -2391816 + CT-rich Low_complexity Low_complexity 1 180 0 2 1730 938 195 107 5 chr5 150145500 150145716 -2391543 - RMER20B LTR ERVK -212 415 178 2 1730 1577 214 61 92 chr5 150145832 150146054 -2391205 - RLTR20B3 LTR ERVK 0 528 325 2 1730 1070 51 0 0 chr5 150146054 150146191 -2391068 - B1_Mm SINE Alu -10 137 1 2 1730 1577 200 68 95 chr5 150146191 150146520 -2390739 - RLTR20B3 LTR ERVK -214 363 21 2 1730 355 127 0 0 chr5 150146895 150146950 -2390309 + URR1B DNA MER1_type 171 225 0 2 1730 239 317 12 0 chr5 150147570 150147652 -2389607 + Tigger5 DNA MER2_type 29 111 -2295 2 1730 655 211 0 45 chr5 150148099 150148233 -2389026 + MT2A LTR ERVL 1 128 -405 2 1730 2489 140 32 9 chr5 150148248 150148689 -2388570 - RMER13A LTR ERVK -407 453 3 3 1730 2054 72 113 0 chr5 150148920 150149212 -2388047 - ORR1A2 LTR MaLR -2 325 1 3 1730 276 30 0 0 chr5 150150845 150150878 -2386381 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 1730 274 265 83 12 chr5 150152518 150152602 -2384657 + L2b LINE L2 3286 3375 0 3 1730 211 254 17 17 chr5 150152709 150152769 -2384490 - L2b LINE L2 -24 3351 3292 3 1730 281 258 15 0 chr5 150153086 150153152 -2384107 - PB1D10 SINE Alu -9 108 42 3 1730 185 154 0 25 chr5 150153153 150153193 -2384066 + C-rich Low_complexity Low_complexity 5 43 0 3 1730 549 0 0 0 chr5 150153643 150153704 -2383555 + (GA)n Simple_repeat Simple_repeat 2 62 0 3 1730 2345 113 60 0 chr5 150153720 150154101 -2383158 - MTC LTR MaLR -7 414 11 3 1730 671 252 0 0 chr5 150154278 150154425 -2382834 + B1_Mur2 SINE Alu 3 149 0 3 1730 315 281 62 62 chr5 150154597 150154714 -2382545 + MTEb LTR MaLR 278 405 -14 3 1730 2566 47 44 3 chr5 150156531 150156892 -2380367 + MTB LTR MaLR 1 376 -24 3 1730 1053 146 131 0 chr5 150157251 150157450 -2379809 - URR1A DNA MER1_type -1 225 1 3 1730 327 324 112 45 chr5 150157906 150158129 -2379130 + MER2 DNA MER2_type 7 244 -101 3 1730 230 326 11 0 chr5 150158234 150158326 -2378933 - MER53 DNA hAT -78 115 23 3 1730 986 263 76 63 chr5 150158756 150159202 -2378057 - RMER13A LTR ERVK -407 453 2 3 1730 576 200 0 0 chr5 150159530 150159655 -2377604 + (TCTA)n Simple_repeat Simple_repeat 3 127 0 3 1730 727 251 51 30 chr5 150159655 150159852 -2377407 - B3 SINE B2 -15 201 1 3 1730 996 259 38 8 chr5 150159860 150160121 -2377138 + B4 SINE B4 2 270 -22 3 1730 213 121 0 0 chr5 150160122 150160155 -2377104 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 1730 589 139 10 0 chr5 150160619 150160720 -2376539 + B2_Mm2 SINE B2 2 103 -92 3 1730 183 156 0 0 chr5 150160720 150160752 -2376507 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3 1730 1869 174 23 51 chr5 150161466 150161660 -2375599 - ORR1C2 LTR MaLR -2 382 196 3 1730 1327 7 7 33 chr5 150161660 150161850 -2375409 + (CA)n Simple_repeat Simple_repeat 1 186 -361 3 1730 1327 7 7 33 chr5 150161857 150162222 -2375037 + (CA)n Simple_repeat Simple_repeat 187 547 0 3 1730 1869 174 23 51 chr5 150162222 150162309 -2374950 - ORR1C2 LTR MaLR -195 189 101 3 1730 2099 137 3 55 chr5 150162309 150162673 -2374586 - ORR1A1 LTR MaLR -1 345 1 3 1730 1869 174 23 51 chr5 150162673 150162773 -2374486 - ORR1C2 LTR MaLR -284 100 1 3 1730 567 193 0 9 chr5 150163349 150163464 -2373795 - RMER20B LTR ERVK -46 581 468 3 1730 1526 199 112 99 chr5 150163508 150163964 -2373295 - RMER20B LTR ERVK -145 482 21 3 1730 922 58 0 0 chr5 150164195 150164315 -2372944 + ORR1A3 LTR MaLR 206 325 -1 3 1730 877 261 52 22 chr5 150164318 150164405 -2372854 + ORR1C2 LTR MaLR 98 185 -199 3 1730 261 0 0 0 chr5 150164405 150164434 -2372825 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 1730 877 261 52 22 chr5 150164434 150164577 -2372682 + ORR1C2 LTR MaLR 186 334 -50 3 1730 223 225 0 0 chr5 150164591 150164631 -2372628 + C-rich Low_complexity Low_complexity 1 40 0 3 1730 1553 226 40 63 chr5 150165015 150165480 -2371779 - RLTR11A LTR ERVK -16 512 17 3 1730 180 179 0 0 chr5 150165632 150165671 -2371588 + A-rich Low_complexity Low_complexity 1 39 0 3 1730 376 318 0 0 chr5 150166210 150166386 -2370873 + GA-rich Low_complexity Low_complexity 2 177 0 3 1730 295 225 61 24 chr5 150166644 150166726 -2370533 - MER5A1 DNA MER1_type -57 109 25 3 1730 217 258 0 61 chr5 150166757 150166856 -2370403 + C-rich Low_complexity Low_complexity 1 93 0 3 1730 225 344 139 28 chr5 150166817 150167068 -2370191 + L2a LINE L2 2919 3197 -229 3 1730 219 178 22 0 chr5 150167131 150167176 -2370083 + CT-rich Low_complexity Low_complexity 4 49 0 3 1730 208 309 29 0 chr5 150167216 150167284 -2369975 + L2a LINE L2 3339 3408 -18 3 1730 405 212 37 12 chr5 150167292 150167373 -2369886 + B3 SINE B2 1 83 -133 3 1730 26 50 0 0 chr5 150167405 150167445 -2369814 + AT_rich Low_complexity Low_complexity 1 40 0 3 1730 230 238 0 0 chr5 150167539 150167581 -2369678 + (CAGA)n Simple_repeat Simple_repeat 1 42 0 3 1730 327 309 116 51 chr5 150167581 150167796 -2369463 + B4A SINE B4 2 230 -62 3 1730 387 41 0 0 chr5 150167825 150167874 -2369385 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 1730 1580 293 45 38 chr5 150167885 150168473 -2368786 - Ricksha_a DNA MuDR -71 1110 499 3 1730 1398 78 39 0 chr5 150168473 150168653 -2368606 + B2_Mm2 SINE B2 2 188 -7 3 1730 1580 293 45 38 chr5 150168653 150168837 -2368422 - Ricksha_a DNA MuDR -683 498 332 3 1730 311 276 62 16 chr5 150169459 150169588 -2367671 - Ricksha_a DNA MuDR -1044 137 8 3 1730 260 277 0 0 chr5 150170473 150170538 -2366721 + MTEa LTR MaLR 3 67 -312 3 1730 301 318 116 66 chr5 150170999 150171372 -2365887 - MLT1F2 LTR MaLR -1 568 201 3 1730 363 23 0 0 chr5 150171372 150171416 -2365843 + (GA)n Simple_repeat Simple_repeat 2 45 0 3 1730 216 347 50 25 chr5 150172386 150172507 -2364752 - L2b LINE L2 -15 3360 3237 3 1730 599 282 45 73 chr5 150172545 150172790 -2364469 + MER31B LTR ERV1 2 239 -227 3 1730 324 194 114 45 chr5 150173018 150173150 -2364109 + MTD LTR MaLR 6 195 -224 3 1730 324 274 0 0 chr5 150173155 150173228 -2364031 + MER31B LTR ERV1 393 465 -1 3 1730 1348 100 0 0 chr5 150173354 150173534 -2363725 + B2_Mm2 SINE B2 2 181 -14 3 1730 381 277 83 15 chr5 150173692 150173824 -2363435 + MLT1A1 LTR MaLR 268 408 0 3 1730 232 295 142 61 chr5 150173907 150174055 -2363204 + LTR37B LTR ERV1 39 198 -270 3 1730 1042 200 5 26 chr5 150174143 150174333 -2362926 + B3 SINE B2 1 186 -30 3 1730 219 139 0 0 chr5 150174339 150174375 -2362884 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 3 1730 255 324 76 110 chr5 150175006 150175242 -2362017 + ORR1E LTR MaLR 96 323 -36 3 1730 232 222 44 0 chr5 150175846 150175891 -2361368 + MLT1M LTR MaLR 147 193 -479 3 1730 243 229 13 79 chr5 150176102 150176178 -2361081 + MER74A LTR ERVL 2 72 -486 3 1730 755 302 131 29 chr5 150176406 150176850 -2360409 + MER74A LTR ERVL 43 531 -27 3 1730 180 213 0 0 chr5 150178846 150178907 -2358352 + C-rich Low_complexity Low_complexity 1 61 0 3 1730 216 189 0 0 chr5 150179180 150179217 -2358042 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1730 234 0 0 0 chr5 150180483 150180509 -2356750 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 3 1730 1297 62 0 0 chr5 150180511 150180672 -2356587 - B2_Mm2 SINE B2 -34 161 1 3 1730 279 0 0 0 chr5 150181049 150181080 -2356179 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 3 1730 384 153 0 0 chr5 150183614 150183699 -2353560 + CT-rich Low_complexity Low_complexity 2 86 0 3 1730 228 135 0 0 chr5 150184513 150184550 -2352709 + (T)n Simple_repeat Simple_repeat 1 37 0 3 1730 263 354 0 75 chr5 150185027 150185048 -2352211 + B4A SINE B4 66 78 -214 3 1730 394 325 52 9 chr5 150185048 150185163 -2352096 + B1F1 SINE Alu 1 120 -29 3 1730 424 297 96 68 chr5 150185265 150185514 -2351745 - MLT1C LTR MaLR -14 453 198 3 1730 840 291 22 31 chr5 150185572 150185799 -2351460 + MTEa LTR MaLR 9 233 -146 3 1730 504 306 31 62 chr5 150185969 150186161 -2351098 + MTEa LTR MaLR 193 378 -1 3 1730 1166 140 11 0 chr5 150186772 150186950 -2350309 + ORR1C2 LTR MaLR 2 181 -193 3 1730 411 211 0 0 chr5 150186950 150187040 -2350219 + CT-rich Low_complexity Low_complexity 1 90 0 3 1730 1219 153 39 15 chr5 150187040 150187246 -2350013 + ORR1C2 LTR MaLR 174 384 0 3 1730 878 231 15 61 chr5 150187303 150187501 -2349758 + B3 SINE B2 1 189 -27 3 1730 432 0 0 0 chr5 150187505 150187553 -2349706 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 1730 1355 143 52 0 chr5 150187648 150187858 -2349401 - URR1A DNA MER1_type 0 226 6 3 1730 698 165 143 15 chr5 150189141 150189272 -2347987 - RSINE1 SINE B4 -21 144 2 3 1730 504 237 88 37 chr5 150189895 150190031 -2347228 - MTD LTR MaLR -271 148 6 3 1730 3336 50 2 2 chr5 150190033 150190433 -2346826 - MTB LTR MaLR 0 400 1 3 1730 2443 159 44 7 chr5 150190485 150190890 -2346369 + MTC LTR MaLR 1 420 -1 3 1730 2133 148 27 24 chr5 150192726 150193135 -2344124 + RMER17C LTR ERVK 1 410 0 3 1730 846 197 135 0 chr5 150193135 150193313 -2343946 - B3 SINE B2 -14 202 1 3 1730 1329 82 16 11 chr5 150193598 150193782 -2343477 - B2_Mm2 SINE B2 -9 186 2 3 1730 1020 231 14 5 chr5 150195244 150195457 -2341802 + B3 SINE B2 1 215 -1 3 1730 258 221 10 173 chr5 150195584 150195688 -2341571 - MER57C2 LTR ERV1 -120 314 228 3 1730 2820 116 30 0 chr5 150195810 150196214 -2341045 + MTC LTR MaLR 6 421 0 3 1730 311 293 121 8 chr5 150196601 150196725 -2340534 - MER57C2 LTR ERV1 -264 170 33 3 1730 2517 69 25 0 chr5 150196797 150197116 -2340143 - ORR1A2 LTR MaLR 0 327 1 3 1730 257 365 0 0 chr5 150197240 150197344 -2339915 + (TG)n Simple_repeat Simple_repeat 1 104 0 3 1730 415 264 116 20 chr5 150197362 150197509 -2339750 - B4A SINE B4 -10 282 122 3 1730 358 271 70 13 chr5 150197514 150197671 -2339588 + L1MB3 LINE L1 6018 6183 0 3 1730 835 93 260 19 chr5 150197961 150198086 -2339173 + B2_Mm2 SINE B2 2 161 -34 3 1730 459 0 0 0 chr5 150198086 150198137 -2339122 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 3 1730 835 93 260 19 chr5 150198137 150198165 -2339094 + B2_Mm2 SINE B2 162 192 -3 3 1730 1500 247 107 18 chr5 150199109 150199493 -2337766 + MTD LTR MaLR 1 418 -1 3 1730 2439 192 22 28 chr5 150199536 150200045 -2337214 + RMER20A LTR ERVK 11 516 0 3 1730 233 293 39 174 chr5 150200817 150200889 -2336370 + MER57D LTR ERV1 9 75 -336 3 1730 1167 58 0 0 chr5 150200889 150201026 -2336233 + B1_Mm SINE Alu 1 137 -10 3 1730 233 293 39 174 chr5 150201026 150201131 -2336128 + MER57D LTR ERV1 76 162 -249 3 1730 21 0 0 0 chr5 150201791 150201812 -2335447 + AT_rich Low_complexity Low_complexity 1 21 0 3 1730 2527 113 8 11 chr5 150202485 150202853 -2334406 + ORR1B2 LTR MaLR 1 367 0 3 1730 1257 251 124 17 chr5 150203210 150203566 -2333693 - MTD LTR MaLR 0 419 26 3 1730 325 264 103 130 chr5 150204189 150204450 -2332809 + ORR1E LTR MaLR 1 254 -105 3 1730 191 368 0 0 chr5 150204820 150204877 -2332382 - L2a LINE L2 -11 3415 3359 3 1730 210 306 224 0 chr5 150205610 150205708 -2331551 + MIRb SINE MIR 20 139 -129 3 1730 301 162 14 14 chr5 150205887 150205956 -2331303 + G-rich Low_complexity Low_complexity 6 74 0 4 1730 747 256 29 12 chr5 150206487 150206657 -2330602 - B3 SINE B2 -42 174 2 4 1730 690 13 0 0 chr5 150206853 150206932 -2330327 + (TCC)n Simple_repeat Simple_repeat 3 81 0 4 1730 684 204 72 7 chr5 150206932 150207062 -2330197 - B1_Mur3 SINE Alu -9 140 2 4 1730 1007 184 44 10 chr5 150207405 150207608 -2329651 - B3 SINE B2 -6 210 1 4 1730 542 240 16 0 chr5 150208273 150208394 -2328865 + ORR1D2 LTR MaLR 1 123 -247 4 216 301 331 25 75 chr5 150208382 150208581 -2328678 - MER74B LTR ERVL -75 547 359 4 1731 908 259 23 85 chr5 150208590 150208962 -2328297 + ORR1E LTR MaLR 1 314 -56 4 1731 221 218 36 18 chr5 150209659 150209715 -2327544 - L2a LINE L2 -1 3425 3369 4 1731 387 0 0 0 chr5 150209865 150209908 -2327351 + (GA)n Simple_repeat Simple_repeat 1 43 0 4 1731 1209 56 0 0 chr5 150210118 150210261 -2326998 - B1_Mus1 SINE Alu -5 143 1 4 1731 795 219 65 43 chr5 150210351 150210537 -2326722 + B3A SINE B2 8 197 -1 4 1731 312 208 0 0 chr5 150210543 150210596 -2326663 + B3A SINE B2 1 53 -145 4 1731 216 318 45 11 chr5 150210683 150210772 -2326487 - L2 LINE L2 -1000 2419 2328 4 1731 194 128 0 41 chr5 150211548 150211597 -2325662 + (TCTCTG)n Simple_repeat Simple_repeat 6 52 0 4 1731 321 131 0 0 chr5 150211604 150211665 -2325594 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1731 948 301 18 28 chr5 150211710 150211994 -2325265 - B4A SINE B4 -11 281 1 4 1731 984 284 70 90 chr5 150212335 150212485 -2324774 - MT2A LTR ERVL -136 397 244 4 1731 450 0 0 0 chr5 150212485 150212535 -2324724 + (CAG)n Simple_repeat Simple_repeat 3 52 0 4 1731 984 284 70 90 chr5 150212535 150212786 -2324473 - MT2A LTR ERVL -290 243 4 4 1731 387 113 0 0 chr5 150213248 150213310 -2323949 + (CA)n Simple_repeat Simple_repeat 1 62 0 4 1731 229 384 40 0 chr5 150213501 150213600 -2323659 + L2c LINE L2 3248 3350 -37 4 1731 347 321 18 35 chr5 150215901 150216014 -2321245 + B4A SINE B4 119 229 -63 4 1731 459 0 0 0 chr5 150216036 150216087 -2321172 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 4 1731 189 197 0 0 chr5 150216694 150216755 -2320504 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 4 1731 472 197 42 35 chr5 150216817 150216954 -2320305 - B3A SINE B2 0 216 81 4 1731 198 0 0 0 chr5 150217663 150217685 -2319574 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 4 1731 507 60 0 0 chr5 150217685 150217752 -2319507 + (TCCA)n Simple_repeat Simple_repeat 2 68 0 4 1731 413 275 49 14 chr5 150218634 150218778 -2318481 + RMER17C LTR ERVK 1 149 -261 4 1731 342 0 0 0 chr5 150218788 150218826 -2318433 + (TC)n Simple_repeat Simple_repeat 2 39 0 4 1731 456 117 0 0 chr5 150219022 150219099 -2318160 + (CA)n Simple_repeat Simple_repeat 1 77 0 4 1731 250 301 0 103 chr5 150219912 150220066 -2317193 + MIR SINE MIR 40 184 -92 4 1731 448 252 70 115 chr5 150220085 150220242 -2317017 + B3A SINE B2 49 198 0 4 1731 477 0 0 0 chr5 150220690 150220743 -2316516 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1731 3145 123 141 40 chr5 150220958 150221699 -2315560 + RMER6A LTR ERVK 10 756 0 4 1731 369 247 115 70 chr5 150221704 150221861 -2315398 - MER5A1 DNA MER1_type -2 164 1 4 1731 23 33 0 0 chr5 150222474 150222504 -2314755 + AT_rich Low_complexity Low_complexity 1 30 0 4 1731 306 342 27 0 chr5 150222610 150222721 -2314538 + Tigger7 DNA MER2_type 21 134 -2357 4 1731 1387 211 113 12 chr5 150223366 150223560 -2313699 - ORR1C2 LTR MaLR 0 384 173 4 1731 459 0 0 0 chr5 150223560 150223611 -2313648 + (GA)n Simple_repeat Simple_repeat 2 52 0 4 1731 1387 211 113 12 chr5 150223611 150223762 -2313497 - ORR1C2 LTR MaLR -212 172 5 4 1731 408 113 41 10 chr5 150224271 150224369 -2312890 + (CAGA)n Simple_repeat Simple_repeat 4 104 0 4 1731 262 229 53 117 chr5 150224813 150224907 -2312352 - 4.5SRNA scRNA scRNA 0 94 7 4 1731 601 176 0 0 chr5 150224823 150224914 -2312345 - B1_Mur3 SINE Alu -58 91 1 4 1731 360 0 0 0 chr5 150224961 150225001 -2312258 + (CA)n Simple_repeat Simple_repeat 2 41 0 4 1731 2040 157 94 22 chr5 150225001 150225404 -2311855 - RLTR20C LTR ERVK -102 432 1 4 1731 715 266 5 89 chr5 150225711 150225913 -2311346 + B3A SINE B2 9 193 -5 4 1731 332 195 157 12 chr5 150225952 150226035 -2311224 + RLTR20A LTR ERVK 447 541 0 4 1731 315 0 0 0 chr5 150226380 150226415 -2310844 + (CA)n Simple_repeat Simple_repeat 1 35 0 4 1731 896 201 80 0 chr5 150227066 150227265 -2309994 + B3 SINE B2 2 216 0 4 1731 897 195 133 0 chr5 150227623 150227818 -2309441 - URR1A DNA MER1_type -1 225 5 4 1731 23 54 0 0 chr5 150227937 150227974 -2309285 + AT_rich Low_complexity Low_complexity 1 37 0 4 1731 379 177 0 0 chr5 150227975 150228037 -2309222 + B1_Mus2 SINE Alu 71 132 -15 4 1731 1840 159 202 25 chr5 150228451 150228554 -2308705 - RLTR11A LTR ERVK -3 525 415 4 1731 2354 91 22 3 chr5 150228554 150228875 -2308384 - ORR1A2 LTR MaLR 0 327 1 4 1731 1840 159 202 25 chr5 150228875 150229217 -2308042 - RLTR11A LTR ERVK -114 414 2 4 1731 1153 82 0 0 chr5 150229323 150229470 -2307789 - B1_Mus1 SINE Alu 0 148 2 4 1731 457 275 37 0 chr5 150230199 150230308 -2306951 + B1_Mus1 SINE Alu 14 126 -22 4 1731 424 236 8 126 chr5 150230498 150230648 -2306611 + PB1 SINE Alu 1 120 0 4 1731 250 312 0 0 chr5 150231780 150231857 -2305402 + ID4_ SINE ID 4 80 -3 4 1731 967 144 0 27 chr5 150232034 150232184 -2305075 - B1_Mur1 SINE Alu -2 147 2 4 1731 620 196 64 46 chr5 150233279 150233444 -2303815 + ID_B1 SINE B4 74 223 -1 4 1731 1544 52 0 10 chr5 150234097 150234290 -2302969 + B2_Mm2 SINE B2 2 192 -3 4 1731 3170 26 3 3 chr5 150234526 150234907 -2302352 - MTA_Mm LTR MaLR 0 396 16 4 1731 252 217 50 0 chr5 150235021 150235081 -2302178 - Lx8 LINE L1 -6 7467 7405 4 1731 494 321 128 28 chr5 150235228 150235555 -2301704 + MLT2D LTR ERVL 1 360 -54 4 1731 450 252 103 0 chr5 150235573 150235680 -2301579 + ID_B1 SINE B4 107 224 0 4 1731 1062 138 0 0 chr5 150235716 150235890 -2301369 + (GGGA)n Simple_repeat Simple_repeat 4 177 0 4 1731 288 0 0 0 chr5 150235895 150235927 -2301332 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 4 1731 501 304 138 13 chr5 150236125 150236450 -2300809 + MTEa LTR MaLR 4 379 0 4 1731 549 0 0 0 chr5 150236689 150236750 -2300509 + (TC)n Simple_repeat Simple_repeat 2 62 0 4 1731 312 27 0 0 chr5 150236750 150236786 -2300473 + (TG)n Simple_repeat Simple_repeat 2 38 0 4 1731 913 192 132 138 chr5 150236787 150237113 -2300146 + MTD LTR MaLR 22 345 -74 4 1731 1337 143 41 5 chr5 150237457 150237675 -2299584 - URR1A DNA MER1_type 0 226 1 4 1731 489 34 0 0 chr5 150237677 150237736 -2299523 + (GA)n Simple_repeat Simple_repeat 2 60 0 4 1731 388 221 0 144 chr5 150239837 150239948 -2297311 + B3A SINE B2 36 130 -68 4 1731 622 222 27 20 chr5 150239955 150240102 -2297157 - B1_Mur1 SINE Alu -1 148 1 4 1731 292 229 129 24 chr5 150240315 150240343 -2296916 + RCHARR1 DNA MER1_type 36 72 -902 4 1731 191 36 36 0 chr5 150240343 150240371 -2296888 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 4 1731 292 229 129 24 chr5 150240371 150240427 -2296832 + RCHARR1 DNA MER1_type 73 129 -845 4 1731 1972 235 12 64 chr5 150240723 150241237 -2296022 + RCHARR1 DNA MER1_type 485 971 -3 4 1731 327 253 0 39 chr5 150241331 150241409 -2295850 - ID_B1 SINE B4 0 224 150 4 1731 264 228 0 0 chr5 150241739 150241796 -2295463 - PB1D7 SINE Alu -63 57 1 4 1731 1278 139 8 82 chr5 150241883 150242126 -2295133 - URR1B DNA MER1_type 0 225 1 4 1731 1130 69 0 20 chr5 150243930 150244068 -2293191 + B1_Mm SINE Alu 1 138 -9 4 1731 213 65 0 0 chr5 150244068 150244099 -2293160 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4 1731 737 215 7 0 chr5 150244178 150244322 -2292937 - B1_Mur1 SINE Alu 0 149 5 4 1731 189 154 0 0 chr5 150245367 150245406 -2291853 + (CA)n Simple_repeat Simple_repeat 1 39 0 4 1731 489 314 99 33 chr5 150245598 150245809 -2291450 - Tigger7 DNA MER2_type -2247 244 20 4 1731 198 259 80 44 chr5 150245956 150246069 -2291190 + L2 LINE L2 2086 2202 -1217 4 1731 1620 191 49 27 chr5 150246160 150246525 -2290734 - ORR1D1 LTR MaLR -1 373 1 4 1731 3347 106 12 6 chr5 150247277 150247781 -2289478 + RLTR28 LTR ERVL 4 510 -14 4 1731 489 257 122 33 chr5 150247921 150248102 -2289157 + B3A SINE B2 2 198 0 4 1731 760 266 80 55 chr5 150248959 150248979 -2288280 - ORR1D2 LTR MaLR -89 281 266 4 1731 1205 43 0 0 chr5 150248979 150249120 -2288139 + B1_Mus1 SINE Alu 2 142 -6 4 1731 311 0 0 25 chr5 150249123 150249163 -2288096 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4 1731 760 266 80 55 chr5 150249163 150249412 -2287847 - ORR1D2 LTR MaLR -105 265 3 4 1731 1591 52 0 0 chr5 150249740 150249931 -2287328 - B2_Mm1a SINE B2 -1 192 2 4 1731 238 264 159 20 chr5 150250083 150250234 -2287025 - Charlie2a DNA MER1_type -73 2788 2617 4 1731 204 40 0 0 chr5 150250300 150250325 -2286934 + (CTG)n Simple_repeat Simple_repeat 2 26 0 4 1731 661 274 13 101 chr5 150250393 150250620 -2286639 - B3 SINE B2 -1 215 9 4 1731 297 287 106 0 chr5 150250632 150250726 -2286533 - B1F SINE Alu -8 141 38 4 1731 2979 199 24 44 chr5 150250798 150251478 -2285781 - Lx9 LINE L1 -7 7637 6972 4 1731 405 258 89 2 chr5 150251489 150251625 -2285634 - Lx9 LINE L1 -1728 5916 5733 4 1731 333 182 0 0 chr5 150251691 150251746 -2285513 - Lx9 LINE L1 -125 5722 5668 4 1731 249 83 0 0 chr5 150251879 150251915 -2285344 + (TA)n Simple_repeat Simple_repeat 2 37 0 4 1731 1129 198 10 0 chr5 150252429 150252636 -2284623 - B3 SINE B2 -2 214 6 4 1731 1261 118 0 30 chr5 150252649 150252850 -2284409 - B2_Mm2 SINE B2 0 195 1 4 1731 304 261 128 22 chr5 150252872 150253099 -2284160 - Charlie2a DNA MER1_type -1182 1679 1429 4 1731 392 227 127 56 chr5 150253101 150253137 -2284122 + B1F2 SINE Alu 10 53 -96 5 1731 450 49 0 0 chr5 150253137 150253198 -2284061 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1731 324 0 0 0 chr5 150253198 150253233 -2284026 + (TG)n Simple_repeat Simple_repeat 1 36 0 5 1731 392 227 127 56 chr5 150253233 150253321 -2283938 + B1F2 SINE Alu 54 143 -6 5 1731 362 312 42 0 chr5 150253414 150253510 -2283749 + PB1D10 SINE Alu 1 100 -17 5 1731 494 172 0 10 chr5 150253522 150253622 -2283637 + C-rich Low_complexity Low_complexity 6 104 0 5 1731 666 314 92 41 chr5 150253691 150254060 -2283199 - Charlie2a DNA MER1_type -1923 938 551 4 1731 725 161 0 25 chr5 150254554 150254675 -2282584 - B3 SINE B2 -86 130 13 5 1731 227 68 23 0 chr5 150254813 150254857 -2282402 - B2_Mm1t SINE B2 -4 189 145 5 1731 838 157 143 21 chr5 150254878 150255032 -2282227 + B3 SINE B2 2 181 -35 5 1731 375 78 0 0 chr5 150255032 150255083 -2282176 + (CATA)n Simple_repeat Simple_repeat 4 54 0 5 1731 838 157 143 21 chr5 150255083 150255117 -2282142 + B3 SINE B2 182 212 -4 5 1731 1245 278 64 9 chr5 150255486 150255831 -2281428 + MTE2b LTR MaLR 15 378 -1 5 1731 333 0 0 0 chr5 150256098 150256135 -2281124 + (TCTG)n Simple_repeat Simple_repeat 1 37 0 5 1731 602 137 29 10 chr5 150256456 150256559 -2280700 - B3A SINE B2 -93 105 1 5 1731 608 261 108 19 chr5 150256570 150256835 -2280424 - L1MB5 LINE L1 -217 5957 5677 5 1731 540 250 78 42 chr5 150257322 150257454 -2279805 + B3 SINE B2 14 157 -59 5 1731 438 36 0 0 chr5 150257454 150257510 -2279749 + (CA)n Simple_repeat Simple_repeat 2 57 0 5 1731 413 250 78 42 chr5 150257510 150257544 -2279715 + B2_Mm2 SINE B2 148 186 -9 5 1731 727 216 15 0 chr5 150257544 150257678 -2279581 - B1_Mur3 SINE Alu -9 140 5 5 1731 957 213 40 10 chr5 150257820 150258019 -2279240 - B3 SINE B2 -11 205 1 5 1731 417 289 295 44 chr5 150258761 150258992 -2278267 + MTEa LTR MaLR 68 356 -3 5 1731 286 270 39 13 chr5 150259724 150259807 -2277452 + ID2 SINE ID 3 87 -65 5 1731 2317 169 122 0 chr5 150259956 150260178 -2277081 + RLTR11A2 LTR ERVK 1 229 -298 5 1731 474 18 0 0 chr5 150260178 150260233 -2277026 + (AGGGGG)n Simple_repeat Simple_repeat 4 58 0 5 1731 2317 169 122 0 chr5 150260233 150260476 -2276783 + RLTR11A2 LTR ERVK 230 522 -5 5 1731 250 257 0 39 chr5 150260546 150260623 -2276636 + G-rich Low_complexity Low_complexity 2 75 0 5 1731 511 289 60 85 chr5 150261113 150261496 -2275763 + ORR1E LTR MaLR 10 370 -4 5 1731 629 233 13 26 chr5 150261571 150261725 -2275534 - B3A SINE B2 -46 152 1 5 1731 229 179 186 43 chr5 150262308 150262378 -2274881 - B1_Mur4 SINE Alu -1 149 70 5 1731 366 225 0 0 chr5 150262410 150262481 -2274778 - tRNA-Val-GTA tRNA tRNA -4 72 2 5 1731 272 319 127 23 chr5 150262900 150263073 -2274186 + MER53 DNA hAT 1 191 -2 5 1731 1157 161 53 19 chr5 150263791 150264000 -2273259 - B3 SINE B2 0 216 1 5 1731 195 96 0 55 chr5 150264207 150264262 -2272997 + (GTTTG)n Simple_repeat Simple_repeat 2 53 0 5 1731 522 202 0 11 chr5 150264673 150264768 -2272491 + RSINE1 SINE B4 12 105 -60 5 1731 21 0 0 0 chr5 150265187 150265208 -2272051 + AT_rich Low_complexity Low_complexity 1 21 0 5 1731 495 0 0 0 chr5 150266428 150266483 -2270776 + (TG)n Simple_repeat Simple_repeat 2 56 0 5 1731 661 282 66 70 chr5 150266885 150267171 -2270088 - B4A SINE B4 -6 286 2 5 1731 333 271 0 0 chr5 150267201 150267334 -2269925 + (CA)n Simple_repeat Simple_repeat 2 134 0 5 1731 402 21 0 0 chr5 150268413 150268460 -2268799 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 5 1731 212 185 0 18 chr5 150268460 150268515 -2268744 + GA-rich Low_complexity Low_complexity 3 56 0 5 1731 1160 188 15 0 chr5 150269254 150269456 -2267803 + B3 SINE B2 1 205 -11 5 1731 202 318 70 35 chr5 150269480 150269594 -2267665 - L2c LINE L2 -1 3386 3269 5 1731 288 0 0 0 chr5 150270042 150270074 -2267185 + (CA)n Simple_repeat Simple_repeat 2 33 0 5 1731 253 277 83 21 chr5 150270202 150270298 -2266961 - Ricksha_c DNA MuDR -1593 455 354 5 1731 813 324 101 22 chr5 150270517 150270757 -2266502 + L1ME2z LINE L1 5498 5739 -705 5 1731 3180 54 23 3 chr5 150270757 150271149 -2266110 + MTB LTR MaLR 1 400 0 5 1731 813 324 101 22 chr5 150271149 150271365 -2265894 + L1ME2z LINE L1 5740 5990 -454 5 1731 928 164 16 47 chr5 150271950 150272142 -2265117 + B2_Mm2 SINE B2 2 187 -8 5 1731 703 130 19 0 chr5 150272739 150272847 -2264412 + B1_Mur4 SINE Alu 5 114 -36 5 1731 971 178 42 56 chr5 150273588 150273802 -2263457 - B3 SINE B2 -4 212 2 5 1731 180 111 0 0 chr5 150273940 150273967 -2263292 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1731 969 206 34 14 chr5 150274036 150274243 -2263016 - B3 SINE B2 -4 212 2 5 1731 430 212 12 0 chr5 150274950 150275035 -2262224 - B1_Mur2 SINE Alu -39 110 25 5 1731 820 276 119 55 chr5 150275101 150275462 -2261797 - RLTR12B LTR ERVK -134 394 11 5 1731 222 205 0 25 chr5 150275474 150275514 -2261745 - PB1D9 SINE Alu -81 39 1 5 1731 394 257 212 42 chr5 150275726 150275962 -2261297 - L1MCa LINE L1 -4365 2037 1762 5 1731 344 304 72 76 chr5 150276069 150276318 -2260941 - L1MCa LINE L1 -4641 1776 1529 5 1731 422 285 92 45 chr5 150276349 150276794 -2260465 - L1MCa LINE L1 -5126 1382 917 5 1731 585 183 25 8 chr5 150276869 150276990 -2260269 + B3 SINE B2 94 216 0 5 1731 195 42 0 0 chr5 150277585 150277609 -2259650 + (G)n Simple_repeat Simple_repeat 1 24 0 5 1731 1401 80 11 0 chr5 150278398 150278586 -2258673 + B2_Mm1t SINE B2 1 190 -3 5 1731 333 304 71 19 chr5 150279088 150279266 -2257993 + L1MC LINE L1 3076 3253 -2893 5 1731 1144 80 108 11 chr5 150279815 150279991 -2257268 - B2_Mm2 SINE B2 -1 194 2 5 1731 851 87 0 8 chr5 150279992 150280119 -2257140 + (TTCC)n Simple_repeat Simple_repeat 4 129 0 5 1731 1145 244 60 22 chr5 150280124 150280488 -2256771 - Lx7 LINE L1 -1473 6223 5846 5 1731 856 74 44 7 chr5 150280478 150280614 -2256645 - L1_Mur3 LINE L1 -484 5396 5256 5 1731 2094 82 7 4 chr5 150280614 150280895 -2256364 - ORR1B1 LTR MaLR -8 386 105 5 1731 393 378 53 45 chr5 150280932 150281289 -2255970 + LTR73 LTR ERV1 68 427 -145 5 1731 216 0 0 0 chr5 150281289 150281313 -2255946 + (T)n Simple_repeat Simple_repeat 1 24 0 5 1731 37 0 0 0 chr5 150281845 150281882 -2255377 + AT_rich Low_complexity Low_complexity 1 37 0 5 1731 21 57 0 0 chr5 150281898 150281933 -2255326 + AT_rich Low_complexity Low_complexity 1 35 0 5 1731 448 16 33 0 chr5 150282423 150282484 -2254775 + (TA)n Simple_repeat Simple_repeat 2 64 0 5 1731 27 62 0 0 chr5 150282630 150282678 -2254581 + AT_rich Low_complexity Low_complexity 1 48 0 5 1731 1659 185 83 50 chr5 150282687 150283074 -2254185 - RMER1C Other Other -8 1334 947 5 1731 516 16 0 0 chr5 150283074 150283135 -2254124 + (TC)n Simple_repeat Simple_repeat 2 62 0 5 1731 1175 76 0 0 chr5 150283135 150283280 -2253979 - B1_Mm SINE Alu -2 145 1 5 1731 1659 185 83 50 chr5 150283280 150283386 -2253873 - RMER1C Other Other -396 946 825 5 1731 761 265 21 18 chr5 150283813 150284047 -2253212 + ORR1D2 LTR MaLR 5 245 -133 5 1731 692 136 11 33 chr5 150284083 150284265 -2252994 + (TCTG)n Simple_repeat Simple_repeat 1 178 0 5 1731 504 0 0 0 chr5 150284318 150284374 -2252885 + (TG)n Simple_repeat Simple_repeat 1 56 0 5 1731 615 171 63 34 chr5 150284374 150284530 -2252729 + ORR1D2 LTR MaLR 200 364 -3 5 1731 411 21 0 0 chr5 150284886 150284934 -2252325 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1731 579 283 86 36 chr5 150285136 150285440 -2251819 + Lx9 LINE L1 7125 7443 -201 5 1731 1071 130 53 32 chr5 150285582 150285772 -2251487 + B2_Mm2 SINE B2 2 195 0 5 1731 301 355 132 16 chr5 150286431 150286869 -2250390 - L2 LINE L2 -480 2939 2451 5 1731 453 19 0 0 chr5 150287613 150287667 -2249592 + (TG)n Simple_repeat Simple_repeat 1 54 0 5 1731 201 138 0 0 chr5 150287894 150287923 -2249336 + (TCTCCC)n Simple_repeat Simple_repeat 3 31 0 5 1731 403 303 30 0 chr5 150288056 150288155 -2249104 + PB1D10 SINE Alu 10 111 -6 5 1731 3164 68 0 12 chr5 150288512 150288917 -2248342 + MTB LTR MaLR 1 400 0 5 1731 293 381 89 25 chr5 150288917 150289187 -2248072 - MLT1L LTR MaLR -300 310 20 5 1731 354 311 155 29 chr5 150289209 150289487 -2247772 + L2 LINE L2 2139 2451 -968 5 1731 1686 214 71 6 chr5 150289560 150289899 -2247360 + ORR1D2 LTR MaLR 1 361 -9 5 1731 189 0 0 0 chr5 150289994 150290015 -2247244 + (TC)n Simple_repeat Simple_repeat 2 22 0 5 1731 609 159 0 0 chr5 150290015 150290178 -2247081 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 5 1731 566 296 43 43 chr5 150290473 150290657 -2246602 - RLTR31_Mur LTR ERVK 0 553 370 5 1731 265 333 138 12 chr5 150291096 150291263 -2245996 - MLT1H LTR MaLR -337 212 25 5 1731 206 81 27 0 chr5 150293796 150293833 -2243426 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 5 1731 270 309 50 30 chr5 150295180 150295280 -2241979 - MLT1A1 LTR MaLR -1 407 306 5 1731 349 243 41 65 chr5 150296055 150296178 -2241081 + Charlie9 DNA MER1_type 3 122 -2635 5 1731 725 283 47 42 chr5 150296812 150297026 -2240233 - B3 SINE B2 -1 215 1 5 1731 278 181 44 44 chr5 150297130 150297201 -2240058 - MTEa LTR MaLR -20 359 289 5 1731 21 0 0 0 chr5 150297329 150297350 -2239909 + GC_rich Low_complexity Low_complexity 1 21 0 5 1731 246 128 0 0 chr5 150297546 150297585 -2239674 + (TCC)n Simple_repeat Simple_repeat 2 40 0 5 1731 641 208 6 0 chr5 150297676 150297849 -2239410 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 5 1731 525 240 0 0 chr5 150297887 150298062 -2239197 + (CCCA)n Simple_repeat Simple_repeat 1 175 0 5 1731 186 348 72 29 chr5 150300682 150300821 -2236438 + L3 LINE CR1 894 1038 -3451 5 1731 2246 148 62 0 chr5 150301256 150301627 -2235632 + ORR1B1 LTR MaLR 1 394 0 5 1731 315 0 0 0 chr5 150301827 150301862 -2235397 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 5 1731 569 296 45 125 chr5 150301915 150302228 -2235031 + B4A SINE B4 1 288 -4 5 1731 1746 175 168 53 chr5 150302394 150302793 -2234466 - RLTR41 LTR ERV1 0 446 2 6 1731 638 109 10 0 chr5 150302986 150303087 -2234172 + (TC)n Simple_repeat Simple_repeat 1 102 0 6 1731 315 0 0 0 chr5 150303111 150303146 -2234113 + (TG)n Simple_repeat Simple_repeat 2 36 0 6 1731 863 190 0 0 chr5 150303156 150303298 -2233961 - B3A SINE B2 -55 143 2 6 1731 792 88 0 0 chr5 150304861 150304975 -2232284 + (TTGG)n Simple_repeat Simple_repeat 2 115 0 6 1731 1053 82 13 20 chr5 150305397 150305546 -2231713 - B1_Mur4 SINE Alu -1 149 2 6 1731 420 220 87 29 chr5 150306749 150306852 -2230407 - L2b LINE L2 -6 3369 3261 6 1731 1119 195 28 19 chr5 150306968 150307182 -2230077 + B3 SINE B2 1 216 0 6 1731 258 32 0 0 chr5 150307719 150307750 -2229509 + (CTG)n Simple_repeat Simple_repeat 1 31 0 6 1731 1462 207 83 81 chr5 150307992 150308412 -2228847 - RMER16 LTR ERVK 0 533 113 6 1731 31 0 0 0 chr5 150308648 150308679 -2228580 + AT_rich Low_complexity Low_complexity 1 31 0 6 1731 426 181 113 149 chr5 150308681 150308709 -2228550 - B2_Mm2 SINE B2 -7 188 164 6 1731 438 20 0 0 chr5 150308709 150308760 -2228499 + (TG)n Simple_repeat Simple_repeat 2 52 0 6 1731 587 181 113 149 chr5 150308760 150308926 -2228333 - B3A SINE B2 -28 170 1 6 1731 470 251 153 58 chr5 150308933 150309344 -2227915 - L1MA5 LINE L1 0 6300 5851 6 1731 252 256 23 58 chr5 150310407 150310494 -2226765 + MT2B2 LTR ERVL 156 239 -345 6 1731 642 193 82 0 chr5 150310418 150310553 -2226706 + B1_Mur4 SINE Alu 5 150 0 6 1731 327 299 61 102 chr5 150310750 150311121 -2226138 - MLT1A1 LTR MaLR 0 408 1 6 1731 1280 103 11 21 chr5 150312036 150312225 -2225034 + B2_Mm1t SINE B2 2 188 -5 6 1731 309 26 0 0 chr5 150312342 150312380 -2224879 + (CCCCCA)n Simple_repeat Simple_repeat 1 38 0 6 1731 225 240 20 0 chr5 150313359 150313409 -2223850 - BC1_Mm scRNA scRNA -97 55 5 6 1731 664 22 22 0 chr5 150313600 150313690 -2223569 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 6 1731 381 43 0 0 chr5 150313788 150313835 -2223424 + (CATA)n Simple_repeat Simple_repeat 2 48 0 6 1731 1143 168 62 24 chr5 150313865 150314073 -2223186 - B3 SINE B2 0 216 1 6 1731 192 353 46 23 chr5 150314567 150314654 -2222605 + L2 LINE L2 1459 1547 -1872 6 1731 225 0 0 0 chr5 150314654 150314679 -2222580 + (TCG)n Simple_repeat Simple_repeat 1 25 0 6 1731 1307 58 6 0 chr5 150314679 150314852 -2222407 + (TTC)n Simple_repeat Simple_repeat 3 176 0 6 1731 534 143 22 22 chr5 150314854 150314990 -2222269 + CT-rich Low_complexity Low_complexity 3 138 0 6 1731 433 260 23 68 chr5 150315445 150315577 -2221682 - MLT1A LTR MaLR -243 131 6 6 1731 391 328 30 0 chr5 150315611 150315742 -2221517 + B1F SINE Alu 13 147 -2 6 1731 405 190 54 0 chr5 150315743 150315991 -2221268 + (TAGA)n Simple_repeat Simple_repeat 1 261 0 6 1731 1875 215 29 24 chr5 150317728 150318200 -2219059 + RLTR31A_Mm LTR ERVK 1 692 0 6 1731 272 136 0 22 chr5 150318219 150318264 -2218995 - ORR1E LTR MaLR -47 323 280 6 1731 535 234 155 46 chr5 150318669 150318772 -2218487 - ORR1E LTR MaLR -106 253 125 6 1731 2063 124 58 23 chr5 150318772 150319118 -2218141 - RLTR15 LTR ERVK 0 359 2 6 1731 535 234 155 46 chr5 150319118 150319233 -2218026 - ORR1E LTR MaLR -235 124 11 6 1731 207 262 83 53 chr5 150319469 150319602 -2217657 + L2b LINE L2 2940 3076 -299 6 1731 272 300 25 0 chr5 150319932 150320012 -2217247 + MLT2B3 LTR ERVL 2 83 -471 6 1731 804 96 0 0 chr5 150320059 150320174 -2217085 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 6 1731 434 247 77 64 chr5 150320409 150320565 -2216694 + MTD LTR MaLR 241 398 -21 6 1731 1202 143 71 9 chr5 150321206 150321418 -2215841 + URR1B DNA MER1_type 1 225 0 6 1731 572 281 102 57 chr5 150321477 150321654 -2215605 + B3A SINE B2 1 185 -13 6 1731 761 142 6 0 chr5 150321720 150321889 -2215370 + (TG)n Simple_repeat Simple_repeat 2 171 0 6 1731 785 149 0 6 chr5 150321930 150322293 -2214966 + (TG)n Simple_repeat Simple_repeat 1 360 0 6 1731 1113 88 0 0 chr5 150322496 150322634 -2214625 + B1_Mus1 SINE Alu 1 138 -10 6 1731 248 0 31 0 chr5 150322634 150322666 -2214593 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 6 1731 469 304 67 29 chr5 150322743 150322953 -2214306 - L2 LINE L2 -1622 1797 1580 6 1731 1695 223 36 19 chr5 150323027 150323438 -2213821 + MTD LTR MaLR 1 418 -1 6 1731 456 280 106 25 chr5 150323537 150323735 -2213524 - L2 LINE L2 -2050 1369 1156 6 1731 180 0 0 0 chr5 150323864 150323884 -2213375 + (C)n Simple_repeat Simple_repeat 1 20 0 6 1731 187 324 63 126 chr5 150323890 150324049 -2213210 - L2 LINE L2 -2500 919 771 6 1731 800 262 79 115 chr5 150324064 150324482 -2212777 - MTD LTR MaLR -15 404 2 6 1731 717 142 3 41 chr5 150324586 150324929 -2212330 + CT-rich Low_complexity Low_complexity 1 329 0 6 1731 790 254 126 5 chr5 150324938 150325128 -2212131 - B3 SINE B2 -2 214 2 6 1731 387 0 0 0 chr5 150325678 150325721 -2211538 + (TG)n Simple_repeat Simple_repeat 2 44 0 6 1731 303 71 0 0 chr5 150326745 150326787 -2210472 + (CA)n Simple_repeat Simple_repeat 2 43 0 6 1731 360 0 0 0 chr5 150328057 150328097 -2209162 + (GA)n Simple_repeat Simple_repeat 1 40 0 6 1731 653 211 104 60 chr5 150328107 150328289 -2208970 - B3A SINE B2 -7 191 2 6 1731 279 0 0 0 chr5 150328293 150328324 -2208935 + (TG)n Simple_repeat Simple_repeat 1 31 0 6 1731 760 181 8 8 chr5 150328331 150328465 -2208794 - RSINE1 SINE B4 -29 136 3 6 1731 495 204 271 47 chr5 150328496 150328666 -2208593 - B3 SINE B2 -6 210 3 6 1731 209 154 0 37 chr5 150328874 150328928 -2208331 + G-rich Low_complexity Low_complexity 1 52 0 6 1731 251 286 32 32 chr5 150329306 150329400 -2207859 + AmnSINE1 SINE SINE 100 193 -382 6 1731 347 183 17 0 chr5 150329870 150329930 -2207329 + ID4_ SINE ID 2 62 -21 6 1731 1693 125 74 33 chr5 150329932 150330196 -2207063 + RMER17C LTR ERVK 2 262 -148 6 1731 426 20 0 0 chr5 150330196 150330247 -2207012 + (CTATA)n Simple_repeat Simple_repeat 1 51 0 6 1731 1693 125 74 33 chr5 150330247 150330345 -2206914 + RMER17C LTR ERVK 263 379 -31 6 1731 405 0 0 0 chr5 150330345 150330390 -2206869 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 6 1731 876 246 156 27 chr5 150331920 150332254 -2205005 - RMER17C LTR ERVK -32 378 2 6 1731 1649 150 3 100 chr5 150333607 150333926 -2203333 - ORR1B1 LTR MaLR -66 328 41 6 1731 1034 142 102 0 chr5 150333958 150334134 -2203125 + B2_Mm2 SINE B2 2 195 0 6 1731 903 98 0 0 chr5 150334141 150334273 -2202986 + (GA)n Simple_repeat Simple_repeat 1 132 0 6 1731 513 276 0 0 chr5 150334511 150334627 -2202632 - PB1D7 SINE Alu 0 120 5 6 1731 354 267 171 42 chr5 150334627 150334663 -2202596 - ID_B1 SINE B4 0 224 56 6 1731 690 298 86 39 chr5 150335409 150335664 -2201595 + B4A SINE B4 1 267 -25 6 1731 321 26 0 0 chr5 150335665 150335703 -2201556 + (CA)n Simple_repeat Simple_repeat 2 39 0 6 1731 1931 168 7 116 chr5 150336018 150336442 -2200817 + ORR1C1 LTR MaLR 1 378 0 6 1731 486 239 7 51 chr5 150336650 150336787 -2200472 - ORR1D2 LTR MaLR 0 370 240 6 1731 378 319 107 48 chr5 150337086 150337396 -2199863 - ORR1E LTR MaLR -24 335 8 6 1731 1091 202 95 49 chr5 150337655 150338017 -2199242 + RLTR20C LTR ERVK 2 479 -99 6 1731 453 36 0 0 chr5 150338017 150338072 -2199187 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1731 523 209 142 45 chr5 150338072 150338156 -2199103 + RLTR20C LTR ERVK 480 577 -1 6 1731 216 0 0 0 chr5 150338322 150338346 -2198913 + (CCA)n Simple_repeat Simple_repeat 3 26 0 6 1731 462 337 115 44 chr5 150338370 150338665 -2198594 - MER2 DNA MER2_type -29 316 1 6 1731 360 0 0 0 chr5 150339292 150339332 -2197927 + (CA)n Simple_repeat Simple_repeat 2 41 0 6 1732 273 57 0 0 chr5 150339982 150340017 -2197242 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 6 1732 377 311 48 105 chr5 150341201 150341496 -2195763 - ORR1E LTR MaLR -81 278 1 6 1732 180 0 0 0 chr5 150341504 150341524 -2195735 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1732 3742 102 73 23 chr5 150341753 150342325 -2194934 - MT2B LTR ERVL 0 601 1 6 1732 474 348 67 75 chr5 150342350 150342557 -2194702 - L2a LINE L2 -5 3421 3203 6 1732 3841 107 25 4 chr5 150342557 150343111 -2194148 - RMER2 LTR ERV1 -1 566 1 6 1732 474 348 67 75 chr5 150343111 150343410 -2193849 - L2a LINE L2 -224 3202 2919 6 1732 1356 109 0 5 chr5 150343952 150344562 -2192697 + (TGGA)n Simple_repeat Simple_repeat 1 607 0 6 1732 499 228 73 40 chr5 150345101 150345192 -2192067 - RLTR20C LTR ERVK 0 578 492 6 1732 201 74 0 0 chr5 150345192 150345219 -2192040 + (CA)n Simple_repeat Simple_repeat 2 28 0 6 1732 499 228 73 40 chr5 150345219 150345278 -2191981 - RLTR20C LTR ERVK -87 491 425 6 1732 1046 204 156 22 chr5 150345274 150345550 -2191709 - RLTR20C LTR ERVK -221 313 1 6 1732 2460 107 50 5 chr5 150345962 150346185 -2191074 - ORR1B1 LTR MaLR 0 394 158 6 1732 837 30 0 0 chr5 150346185 150346285 -2190974 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 6 1732 2460 107 50 5 chr5 150346285 150346438 -2190821 - ORR1B1 LTR MaLR -237 157 1 6 1732 1636 31 0 5 chr5 150346645 150346837 -2190422 - B2_Mm1a SINE B2 -1 192 2 6 1732 337 279 129 23 chr5 150346969 150347101 -2190158 + MIR SINE MIR 31 176 -86 6 1732 3510 102 41 17 chr5 150347988 150348519 -2188740 + L1_Mus4 LINE L1 6081 6624 -12 6 1732 2417 120 30 28 chr5 150348566 150348959 -2188300 - ORR1B1 LTR MaLR 0 394 1 6 1732 598 273 15 0 chr5 150348972 150349104 -2188155 + RSINE1 SINE B4 26 159 -6 6 1732 1761 149 48 31 chr5 150349506 150349859 -2187400 + RLTR15 LTR ERVK 1 359 0 6 1732 3178 41 21 53 chr5 150350069 150350503 -2186756 - BGLII LTR ERVK 0 421 2 6 1732 3419 202 31 49 chr5 150350505 150351161 -2186098 - RMER3D-int LTR ERVK -1 2841 2185 6 1732 2131 115 183 35 chr5 150351161 150351538 -2185721 - RLTR10C LTR ERVK -3 433 1 6 1732 3419 202 31 49 chr5 150351538 150351802 -2185457 - RMER3D-int LTR ERVK -658 2184 1937 6 1732 1909 158 36 122 chr5 150351807 150352282 -2184977 - RMER3D-int LTR ERVK -1146 1696 1263 6 1732 245 231 0 0 chr5 150352486 150352538 -2184721 + C-rich Low_complexity Low_complexity 1 52 0 6 1732 673 124 38 0 chr5 150352707 150352799 -2184460 + RMER3D-int LTR ERVK 489 584 -2258 6 1732 1050 8 0 0 chr5 150352799 150352918 -2184341 + (GGAAA)n Simple_repeat Simple_repeat 2 120 0 6 1732 673 124 38 0 chr5 150352918 150352930 -2184329 + RMER3D-int LTR ERVK 585 596 -2246 6 1732 600 133 29 2 chr5 150352936 150353047 -2184212 + RMER3D-int LTR ERVK 1014 1102 -1740 6 1732 2936 78 19 2 chr5 150353153 150353566 -2183693 - BGLII LTR ERVK -1 420 1 7 1732 180 0 0 0 chr5 150353679 150353699 -2183560 + (A)n Simple_repeat Simple_repeat 1 20 0 7 1732 430 204 9 9 chr5 150353698 150353807 -2183452 + (CATATA)n Simple_repeat Simple_repeat 2 110 0 7 1732 204 97 0 0 chr5 150354047 150354078 -2183181 + (G)n Simple_repeat Simple_repeat 1 31 0 7 1732 24 0 0 0 chr5 150354822 150354846 -2182413 + AT_rich Low_complexity Low_complexity 1 24 0 7 1732 610 221 192 0 chr5 150355427 150355599 -2181660 + B3 SINE B2 3 207 -9 7 1732 1858 218 72 22 chr5 150356463 150356923 -2180336 - RLTR16 LTR ERVK -22 483 1 7 1732 692 295 63 41 chr5 150357230 150357577 -2179682 + RMER10A LTR ERVL 51 433 -9 7 1732 204 40 0 0 chr5 150358413 150358438 -2178821 + (CA)n Simple_repeat Simple_repeat 1 25 0 7 1732 369 0 0 0 chr5 150359087 150359128 -2178131 + (TG)n Simple_repeat Simple_repeat 1 41 0 7 1732 540 0 0 0 chr5 150359128 150359187 -2178072 + (GA)n Simple_repeat Simple_repeat 1 60 0 7 1732 227 54 0 26 chr5 150359246 150359284 -2177975 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 7 1732 351 0 0 0 chr5 150359290 150359329 -2177930 + (CA)n Simple_repeat Simple_repeat 1 39 0 7 1732 1485 180 59 28 chr5 150359370 150359696 -2177563 - MTD LTR MaLR -12 407 83 7 1732 265 268 123 18 chr5 150359722 150359836 -2177423 + MLT1A0 LTR MaLR 221 346 -19 7 1732 353 262 38 0 chr5 150359832 150359912 -2177347 + PB1D10 SINE Alu 33 115 -2 7 1732 189 0 0 0 chr5 150360057 150360078 -2177181 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 7 1732 632 253 36 59 chr5 150360209 150360451 -2176808 - RLTR12B LTR ERVK -299 229 9 7 1732 624 336 145 44 chr5 150360461 150361232 -2176027 + L2a LINE L2 1947 2795 -624 7 1732 1679 213 76 16 chr5 150361287 150361669 -2175590 - MTD LTR MaLR -14 405 1 7 1732 252 337 101 70 chr5 150361787 150362144 -2175115 + L2a LINE L2 3056 3423 -3 7 1732 627 270 120 37 chr5 150362191 150362536 -2174723 + RLTR11A2 LTR ERVK 1 423 -18 7 1732 359 44 0 0 chr5 150362706 150362751 -2174508 - HAL1-3A_ME LINE L1 -838 2020 1976 7 1732 351 222 0 0 chr5 150362760 150362877 -2174382 + (TG)n Simple_repeat Simple_repeat 2 118 0 7 1732 325 113 0 54 chr5 150362877 150362933 -2174326 - HAL1-3A_ME LINE L1 -830 2028 1976 7 1732 651 224 0 0 chr5 150362970 150363149 -2174110 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1732 235 250 33 16 chr5 150364339 150364400 -2172859 - RLTR22_Mur LTR ERVK -1446 402 341 7 1732 1199 90 96 6 chr5 150364627 150364805 -2172454 + B2_Mm2 SINE B2 2 195 0 7 1732 392 158 13 0 chr5 150364805 150364881 -2172378 + GA-rich Low_complexity Low_complexity 1 77 0 7 1732 1889 143 100 72 chr5 150365081 150365484 -2171775 + RMER10A LTR ERVL 1 412 -30 7 1732 1203 79 0 0 chr5 150365484 150365648 -2171611 + (TCTCC)n Simple_repeat Simple_repeat 3 166 0 7 1732 1889 143 100 72 chr5 150365648 150365674 -2171585 + RMER10A LTR ERVL 413 441 -1 7 1732 579 202 94 66 chr5 150366079 150366120 -2171139 - B3A SINE B2 -6 189 149 7 1732 333 0 0 0 chr5 150366120 150366157 -2171102 + (TC)n Simple_repeat Simple_repeat 1 37 0 7 1732 471 35 0 0 chr5 150366157 150366214 -2171045 + (TG)n Simple_repeat Simple_repeat 1 57 0 7 1732 584 175 121 53 chr5 150366214 150366353 -2170906 - B3 SINE B2 -44 154 5 7 1732 816 198 37 0 chr5 150367171 150367333 -2169926 + B3 SINE B2 4 171 -45 7 1732 421 219 0 40 chr5 150367492 150367592 -2169667 + MTD LTR MaLR 1 96 -323 7 1732 582 158 10 19 chr5 150367569 150367672 -2169587 + MTD LTR MaLR 304 405 -14 7 1732 666 291 78 13 chr5 150367680 150367910 -2169349 - B4A SINE B4 -43 249 5 7 1732 388 228 6 25 chr5 150369121 150369221 -2168038 - PB1D7 SINE Alu -1 148 37 7 1732 268 279 6 6 chr5 150369268 150369430 -2167829 + (TG)n Simple_repeat Simple_repeat 2 163 0 7 1732 191 152 22 0 chr5 150370008 150370054 -2167205 + GA-rich Low_complexity Low_complexity 1 47 0 7 1732 803 300 111 5 chr5 150370056 150370698 -2166561 + L1MB7 LINE L1 5062 5766 -412 7 1732 234 62 0 0 chr5 150370700 150370732 -2166527 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 7 1732 260 280 65 9 chr5 150370754 150370862 -2166397 + L1MB7 LINE L1 6066 6179 -5 7 1732 269 315 7 73 chr5 150371023 150371160 -2166099 - L2 LINE L2 -1061 2358 2231 7 1732 24 0 0 0 chr5 150371941 150371965 -2165294 + AT_rich Low_complexity Low_complexity 1 24 0 7 1732 183 42 0 0 chr5 150371965 150371989 -2165270 + (CAA)n Simple_repeat Simple_repeat 2 25 0 7 1732 3386 72 47 21 chr5 150372175 150372645 -2164614 - RLTR45 LTR ERVK 0 482 1 7 1732 397 261 25 50 chr5 150373427 150373548 -2163711 - MLT1A1 LTR MaLR 0 408 291 7 1732 885 123 0 0 chr5 150373617 150373755 -2163504 + (TTTC)n Simple_repeat Simple_repeat 4 141 0 7 1732 1269 67 6 0 chr5 150373760 150373924 -2163335 - B2_Mm2 SINE B2 -30 165 1 7 1732 1375 136 19 5 chr5 150373990 150374205 -2163054 - ORR1B1 LTR MaLR 0 394 177 7 1732 285 293 12 128 chr5 150374383 150374555 -2162704 + ORR1E LTR MaLR 161 312 -47 7 1732 469 325 71 87 chr5 150374594 150374812 -2162447 - MLT1B LTR MaLR -15 375 160 7 1732 468 0 0 0 chr5 150374812 150374864 -2162395 + (TC)n Simple_repeat Simple_repeat 1 52 0 7 1732 469 325 71 87 chr5 150374864 150375026 -2162233 - MLT1B LTR MaLR -231 159 2 7 1732 431 60 15 0 chr5 150375168 150375235 -2162024 + (TTTG)n Simple_repeat Simple_repeat 1 68 0 7 1732 692 93 159 0 chr5 150375235 150375342 -2161917 - B1_Mus2 SINE Alu -13 134 11 7 1732 218 271 8 0 chr5 150375660 150375778 -2161481 + (TG)n Simple_repeat Simple_repeat 2 120 0 7 1732 267 31 0 0 chr5 150375950 150375982 -2161277 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 7 1732 803 88 182 8 chr5 150375984 150376110 -2161149 - B1_Mus1 SINE Alu 0 148 1 7 1732 1261 41 0 0 chr5 150376172 150376319 -2160940 + B1_Mm SINE Alu 1 147 0 7 1732 2118 199 112 57 chr5 150376807 150377257 -2160002 - Lx7 LINE L1 -433 7263 6784 7 1732 450 0 0 0 chr5 150377257 150377307 -2159952 + (TG)n Simple_repeat Simple_repeat 2 51 0 7 1732 2118 199 112 57 chr5 150377307 150377438 -2159821 - Lx7 LINE L1 -913 6783 6650 7 1732 228 281 0 0 chr5 150377472 150377639 -2159620 + (TG)n Simple_repeat Simple_repeat 2 168 0 7 1732 195 277 0 0 chr5 150377682 150377819 -2159440 + (TG)n Simple_repeat Simple_repeat 2 138 0 7 1732 358 342 0 0 chr5 150377832 150377990 -2159269 + (TG)n Simple_repeat Simple_repeat 1 158 0 7 1732 619 206 12 113 chr5 150378037 150378294 -2158965 + Lx7 LINE L1 7450 7680 -16 7 1732 1040 104 0 7 chr5 150378315 150378455 -2158804 + B1_Mus1 SINE Alu 2 140 -8 7 1732 216 0 0 0 chr5 150378455 150378479 -2158780 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7 1732 740 230 133 17 chr5 150378523 150378704 -2158555 + B3 SINE B2 1 202 -14 7 1732 365 58 19 0 chr5 150378704 150378756 -2158503 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 7 1732 521 83 0 0 chr5 150378961 150379033 -2158226 - B3 SINE B2 -144 72 1 7 1732 650 258 29 91 chr5 150379327 150379536 -2157723 + B3A SINE B2 1 196 -2 7 1732 270 0 0 0 chr5 150380603 150380633 -2156626 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 7 1732 366 204 69 39 chr5 150380715 150380817 -2156442 + PB1D7 SINE Alu 2 106 -14 7 1732 438 69 0 0 chr5 150380817 150380875 -2156384 + (CAAT)n Simple_repeat Simple_repeat 4 61 0 7 1732 2253 147 41 20 chr5 150381030 150381420 -2155839 - MTC LTR MaLR -23 398 1 7 1732 189 376 12 12 chr5 150381427 150381513 -2155746 - MIRb SINE MIR -89 179 94 7 1732 374 312 97 42 chr5 150382220 150382364 -2154895 - MTE2b LTR MaLR -17 362 211 7 1732 536 254 137 137 chr5 150382469 150382724 -2154535 - MTE2b LTR MaLR -124 255 1 7 1732 332 237 51 39 chr5 150382725 150382828 -2154431 + MLT1C LTR MaLR 274 414 -53 7 1732 824 200 41 12 chr5 150382896 150383068 -2154191 - B3 SINE B2 0 216 40 7 1732 889 131 286 0 chr5 150383693 150383861 -2153398 + B3 SINE B2 1 216 0 7 1732 429 20 0 0 chr5 150383864 150383914 -2153345 + (CATA)n Simple_repeat Simple_repeat 3 52 0 7 1732 396 0 0 0 chr5 150383914 150383958 -2153301 + (TG)n Simple_repeat Simple_repeat 2 45 0 7 1732 216 0 0 0 chr5 150383985 150384009 -2153250 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1732 306 326 77 66 chr5 150384482 150384741 -2152518 - ORR1E LTR MaLR 0 359 98 7 1732 676 251 35 60 chr5 150384747 150384956 -2152303 - B3A SINE B2 0 198 8 7 1732 204 195 0 0 chr5 150384961 150384977 -2152282 + (CAA)n Simple_repeat Simple_repeat 2 17 0 7 1732 984 173 85 10 chr5 150384977 150385176 -2152083 + B3 SINE B2 2 215 -1 7 1732 204 195 0 0 chr5 150385176 150385200 -2152059 + (CAA)n Simple_repeat Simple_repeat 3 26 0 7 1732 221 319 65 40 chr5 150385819 150385855 -2151404 - RSINE1 SINE B4 -37 128 2 7 1732 480 90 5 52 chr5 150385855 150385943 -2151316 - B2_Mm2 SINE B2 -129 87 1 7 1732 2556 133 16 42 chr5 150387661 150388093 -2149166 - MTC LTR MaLR 0 421 1 7 1732 244 361 55 63 chr5 150388167 150388294 -2148965 - L2b LINE L2 -2 3373 3248 7 1732 544 300 137 96 chr5 150388762 150389048 -2148211 - MLT1A LTR MaLR -20 354 56 7 1732 608 135 419 66 chr5 150389048 150389215 -2148044 - URR1A DNA MER1_type 0 226 1 7 1732 544 300 137 96 chr5 150389215 150389263 -2147996 - MLT1A LTR MaLR -319 55 6 7 1732 636 14 0 0 chr5 150389474 150389547 -2147712 + (GA)n Simple_repeat Simple_repeat 2 74 0 7 1732 2000 148 53 6 chr5 150389806 150390145 -2147114 - RLTR15 LTR ERVK -1 358 4 7 1732 362 151 0 14 chr5 150392350 150392424 -2144835 + (CA)n Simple_repeat Simple_repeat 1 73 0 7 1732 345 100 0 0 chr5 150392452 150392502 -2144757 + HAL1-3A_ME LINE L1 1976 2025 -833 7 1732 187 321 0 18 chr5 150392871 150392928 -2144331 - MIRc SINE MIR -48 220 165 7 1732 241 268 18 0 chr5 150393248 150393304 -2143955 - MLT1A LTR MaLR -270 104 48 7 1732 1737 212 73 103 chr5 150393776 150393932 -2143327 + RMER20A LTR ERVK 11 155 -361 7 1732 228 67 0 0 chr5 150393932 150393962 -2143297 + (CATA)n Simple_repeat Simple_repeat 4 33 0 7 1732 1737 212 73 103 chr5 150393962 150394276 -2142983 + RMER20A LTR ERVK 156 466 -50 7 1732 315 0 0 0 chr5 150394276 150394311 -2142948 + (CA)n Simple_repeat Simple_repeat 1 35 0 7 1732 1737 212 73 103 chr5 150394311 150394361 -2142898 + RMER20A LTR ERVK 467 515 -1 7 1732 279 0 0 0 chr5 150394383 150394414 -2142845 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8 1732 3811 73 17 55 chr5 150394757 150395289 -2141970 + RLTR1B LTR ERV1 1 512 0 8 1732 226 217 0 0 chr5 150395401 150395447 -2141812 + GA-rich Low_complexity Low_complexity 1 46 0 8 1732 315 0 0 0 chr5 150395485 150395520 -2141739 + (GA)n Simple_repeat Simple_repeat 2 36 0 8 1732 204 290 0 0 chr5 150395537 150395599 -2141660 + GA-rich Low_complexity Low_complexity 66 127 0 8 1732 387 0 0 0 chr5 150396734 150396777 -2140482 + (CA)n Simple_repeat Simple_repeat 2 44 0 8 1732 243 103 0 0 chr5 150397150 150397189 -2140070 + (TTG)n Simple_repeat Simple_repeat 1 39 0 8 1732 2016 149 92 6 chr5 150397259 150397584 -2139675 + RLTR41 LTR ERV1 93 445 -1 8 1732 186 43 0 0 chr5 150397627 150397650 -2139609 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 8 1732 676 156 46 62 chr5 150397650 150397769 -2139490 - B1_Mur3 SINE Alu -10 139 19 8 1732 333 0 0 0 chr5 150398318 150398355 -2138904 + (GA)n Simple_repeat Simple_repeat 2 38 0 8 1732 485 275 124 145 chr5 150398358 150398407 -2138852 + B4A SINE B4 46 94 -198 8 1732 207 0 0 0 chr5 150398407 150398430 -2138829 + (CA)n Simple_repeat Simple_repeat 1 23 0 8 1732 485 275 124 145 chr5 150398430 150398622 -2138637 + B4A SINE B4 95 282 -10 8 1732 421 298 116 82 chr5 150399154 150399446 -2137813 + RLTR11B LTR ERVK 99 460 -68 8 1732 195 42 0 0 chr5 150399454 150399478 -2137781 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 8 1732 1179 62 0 0 chr5 150399478 150399615 -2137644 - B1_Mus1 SINE Alu -9 139 3 8 1732 276 304 138 66 chr5 150399615 150399642 -2137617 + RLTR11B LTR ERVK 461 482 -46 8 1732 543 43 0 0 chr5 150399801 150399871 -2137388 + (GA)n Simple_repeat Simple_repeat 2 71 0 8 1732 558 312 129 35 chr5 150400234 150400576 -2136683 - MLT1A LTR MaLR 0 374 1 8 1732 954 204 37 7 chr5 150400876 150401104 -2136155 + MYSERV16_I-int LTR ERVK 813 1006 -1320 8 1732 1257 237 49 38 chr5 150401104 150401472 -2135787 + RLTR11A LTR ERVK 188 528 0 8 1732 384 306 97 7 chr5 150403190 150403335 -2133924 - ORR1D2 LTR MaLR -83 287 130 8 1732 343 280 0 0 chr5 150403319 150403394 -2133865 - ORR1D2 LTR MaLR -179 191 117 8 1732 878 79 16 0 chr5 150403396 150403523 -2133736 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 8 1732 207 0 0 0 chr5 150403523 150403546 -2133713 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8 1732 1205 43 0 0 chr5 150403546 150403685 -2133574 - B1_Mus2 SINE Alu -8 139 1 8 1732 231 114 0 0 chr5 150403685 150403720 -2133539 + (T)n Simple_repeat Simple_repeat 1 35 0 8 1732 272 234 31 0 chr5 150403720 150403784 -2133475 - ORR1D2 LTR MaLR -250 120 55 8 1732 2780 117 0 26 chr5 150403790 150404210 -2133049 + MTC LTR MaLR 5 413 -8 8 1732 1577 150 254 29 chr5 150404213 150404486 -2132773 + MTC-int LTR MaLR 2 520 -738 8 1732 1096 83 0 0 chr5 150404486 150404619 -2132640 + B1_Mm SINE Alu 1 133 -14 8 1732 465 19 0 0 chr5 150404622 150404676 -2132583 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 8 1732 1577 175 214 58 chr5 150404676 150404910 -2132349 + MTC-int LTR MaLR 521 829 -429 8 1732 657 182 63 35 chr5 150404910 150405052 -2132207 - RMER19C LTR ERVK 0 611 466 8 1732 1507 160 108 129 chr5 150405052 150405136 -2132123 - RMER16 LTR ERVK 0 533 494 8 1732 1276 34 0 7 chr5 150405136 150405284 -2131975 - B1_Mm SINE Alu 0 147 1 8 1732 1507 160 108 129 chr5 150405284 150405586 -2131673 - RMER16 LTR ERVK -40 493 155 8 1732 1329 255 39 57 chr5 150405605 150406012 -2131247 - RMER19C LTR ERVK -211 400 1 8 1732 1314 145 33 5 chr5 150406012 150406227 -2131032 + MTC-int LTR MaLR 824 1044 -214 8 1732 2018 123 79 6 chr5 150406221 150406549 -2130710 - RMER20A LTR ERVK -164 352 1 8 1732 1544 247 64 19 chr5 150406556 150407174 -2130085 - Lx5 LINE L1 -569 6891 6455 8 1732 582 186 7 85 chr5 150407176 150407329 -2129930 + MTC-int LTR MaLR 1118 1258 0 8 1732 1989 153 135 8 chr5 150407885 150408255 -2129004 + MTC LTR MaLR 5 421 0 8 1732 180 152 0 0 chr5 150408993 150409026 -2128233 + C-rich Low_complexity Low_complexity 1 33 0 8 1732 207 0 0 0 chr5 150410326 150410349 -2126910 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8 1732 770 102 0 0 chr5 150410358 150410466 -2126793 - B1_Mur4 SINE Alu -30 120 13 8 1732 1202 62 0 0 chr5 150410467 150410613 -2126646 + B1_Mus2 SINE Alu 2 147 0 8 1732 296 318 7 102 chr5 150410972 150411015 -2126244 - Tigger13a DNA MER2_type -25 746 711 8 1732 1147 63 0 20 chr5 150411015 150411153 -2126106 + B1_Mm SINE Alu 1 138 -9 8 1732 180 0 0 0 chr5 150411153 150411173 -2126086 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8 1732 296 318 7 102 chr5 150411180 150411283 -2125976 - Tigger13a DNA MER2_type -61 710 614 8 1732 265 311 126 40 chr5 150411469 150411667 -2125592 - Tigger13a DNA MER2_type -471 300 86 8 1732 251 307 40 0 chr5 150411894 150411969 -2125290 - MIRc SINE MIR -127 141 64 8 1732 550 295 52 0 chr5 150412783 150412993 -2124266 + L1MB2 LINE L1 5837 6057 -114 8 1732 444 280 39 65 chr5 150412997 150413020 -2124239 + B1F1 SINE Alu 1 149 0 8 1732 612 192 0 77 chr5 150413020 150413150 -2124109 + ID_B1 SINE B4 105 224 0 8 1732 258 209 204 28 chr5 150413150 150413258 -2124001 + L1MB4 LINE L1 6054 6180 0 8 1732 1200 49 7 0 chr5 150413269 150413412 -2123847 + B1_Mus2 SINE Alu 2 145 -2 8 1732 216 0 0 0 chr5 150413412 150413436 -2123823 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8 1732 919 245 66 5 chr5 150413453 150413589 -2123670 + B3 SINE B2 3 151 -65 8 1732 450 0 0 0 chr5 150413589 150413639 -2123620 + (CA)n Simple_repeat Simple_repeat 1 50 0 8 1732 919 245 66 5 chr5 150413639 150413699 -2123560 + B3 SINE B2 152 211 -5 8 1732 200 200 0 62 chr5 150414454 150414502 -2122757 - L3 LINE CR1 -3326 1163 1119 8 1732 210 318 23 34 chr5 150414669 150414757 -2122502 - MIRb SINE MIR -63 205 119 8 1732 368 244 184 1 chr5 150415218 150415415 -2121844 + MLT1D LTR MaLR 268 467 0 8 1732 444 158 0 0 chr5 150415796 150415910 -2121349 + GA-rich Low_complexity Low_complexity 2 115 0 8 1732 371 287 157 54 chr5 150418175 150418341 -2118918 + B3A SINE B2 2 184 -14 8 1732 226 192 154 0 chr5 150418573 150418625 -2118634 - B1_Mur2 SINE Alu -55 94 35 8 1732 207 0 0 0 chr5 150421993 150422016 -2115243 + (TCGGG)n Simple_repeat Simple_repeat 1 23 0 8 1732 297 267 139 0 chr5 150423733 150423819 -2113440 + B1F SINE Alu 1 98 -51 8 1732 198 0 0 0 chr5 150427788 150427810 -2109449 + (T)n Simple_repeat Simple_repeat 1 22 0 8 1732 478 93 40 0 chr5 150427810 150427885 -2109374 - PB1D9 SINE Alu 0 120 43 8 1732 808 100 0 0 chr5 150428063 150428173 -2109086 + B1_Mus1 SINE Alu 39 148 0 8 1732 227 302 47 94 chr5 150428065 150428193 -2109066 + B4A SINE B4 125 246 -46 8 1732 463 199 217 38 chr5 150428448 150428605 -2108654 + URR1B DNA MER1_type 35 219 -6 8 1732 260 247 41 0 chr5 150428773 150428846 -2108413 + RSINE1 SINE B4 54 129 -36 8 1732 1666 31 5 0 chr5 150430665 150430856 -2106403 - B2_Mm1t SINE B2 0 193 2 8 1732 189 361 14 27 chr5 150433074 150433148 -2104111 + L4 LINE RTE 1687 1759 -270 8 1732 21 0 0 0 chr5 150433593 150433614 -2103645 + AT_rich Low_complexity Low_complexity 1 21 0 8 1732 386 274 17 58 chr5 150435667 150435787 -2101472 - RSINE1 SINE B4 -47 118 4 8 1732 340 202 9 152 chr5 150435842 150435854 -2101405 + MT2B LTR ERVL 153 237 -359 8 1732 507 167 0 45 chr5 150435854 150435942 -2101317 + PB1D9 SINE Alu 1 84 -36 8 1732 204 40 0 0 chr5 150435962 150435987 -2101272 + (CCTA)n Simple_repeat Simple_repeat 1 25 0 8 1732 475 268 123 26 chr5 150436103 150436291 -2100968 - B3A SINE B2 -11 184 11 8 1732 774 0 0 0 chr5 150439611 150439697 -2097562 + (TTC)n Simple_repeat Simple_repeat 2 87 0 8 1732 180 0 0 0 chr5 150440398 150440418 -2096841 + (T)n Simple_repeat Simple_repeat 1 20 0 8 1732 1231 61 0 0 chr5 150440418 150440565 -2096694 - B1_Mus1 SINE Alu 0 148 2 8 1732 251 245 52 86 chr5 150440589 150440612 -2096647 - BC1_Mm scRNA scRNA -38 114 3 8 1732 272 376 0 0 chr5 150440612 150440625 -2096634 - RSINE1 SINE B4 -69 96 4 8 1732 587 112 0 0 chr5 150440625 150440705 -2096554 - B2_Mm2 SINE B2 -113 82 3 8 1732 184 307 75 50 chr5 150441030 150441150 -2096109 + MIRb SINE MIR 83 205 -63 8 1732 808 184 24 35 chr5 150441468 150441623 -2095636 + B3 SINE B2 4 156 -60 8 1732 325 279 143 64 chr5 150441623 150441937 -2095322 - RLTR15 LTR ERVK 0 359 21 8 1732 516 32 0 0 chr5 150441968 150442030 -2095229 + (TA)n Simple_repeat Simple_repeat 2 63 0 8 1732 1341 95 26 0 chr5 150442434 150442623 -2094636 - B2_Mm2 SINE B2 0 195 2 8 1732 943 34 0 0 chr5 150442850 150442967 -2094292 + B1_Mm SINE Alu 31 147 0 8 1732 180 0 0 0 chr5 150442999 150443019 -2094240 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 8 1732 495 259 41 27 chr5 150443065 150443188 -2094071 + B3 SINE B2 68 193 -23 8 1732 1146 68 0 20 chr5 150443188 150443338 -2093921 + B1_Mus2 SINE Alu 1 147 0 8 1732 495 259 41 27 chr5 150443338 150443361 -2093898 + B3 SINE B2 194 216 0 8 1732 1049 82 13 20 chr5 150443723 150443872 -2093387 - B1_Mus1 SINE Alu 0 148 1 8 1732 277 284 41 41 chr5 150444032 150444153 -2093106 + MLT1K LTR MaLR 154 274 -321 8 1732 217 135 19 19 chr5 150444172 150444225 -2093034 + CT-rich Low_complexity Low_complexity 4 56 0 8 1732 1146 178 58 0 chr5 150444635 150444843 -2092416 + URR1B DNA MER1_type 6 225 0 8 1732 361 279 184 0 chr5 150444858 150444994 -2092265 - MER20 DNA MER1_type -42 177 17 8 1732 670 204 102 32 chr5 150445317 150445386 -2091873 + RLTR20A2 LTR ERVK 411 479 -99 8 1732 402 21 0 0 chr5 150445386 150445433 -2091826 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1732 670 204 102 32 chr5 150445433 150445520 -2091739 + RLTR20A2 LTR ERVK 480 577 -1 8 1732 505 260 123 54 chr5 150445981 150446184 -2091075 - 7SK RNA RNA 0 331 115 8 1732 237 33 0 0 chr5 150446282 150446312 -2090947 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 8 1732 720 221 7 14 chr5 150446685 150446827 -2090432 + ID_B1 SINE B4 84 224 0 8 1732 435 38 0 0 chr5 150447041 150447094 -2090165 + (TA)n Simple_repeat Simple_repeat 2 54 0 8 1732 318 324 38 29 chr5 150447094 150447199 -2090060 + L1MCa LINE L1 1890 1995 -4513 8 1732 428 268 0 9 chr5 150447233 150447346 -2089913 - B1F SINE Alu 0 149 38 8 1732 1641 228 60 28 chr5 150447403 150447465 -2089794 - MTD LTR MaLR 0 419 359 8 1732 3117 44 39 3 chr5 150447465 150447849 -2089410 - MTB LTR MaLR -2 398 1 9 1732 1641 228 60 28 chr5 150447849 150448183 -2089076 - MTD LTR MaLR -61 358 10 8 1732 709 230 147 2 chr5 150448650 150448829 -2088430 + B3 SINE B2 1 193 -2 9 1732 378 129 0 0 chr5 150448972 150449034 -2088225 + (TC)n Simple_repeat Simple_repeat 1 62 0 9 1732 240 35 0 0 chr5 150449036 150449065 -2088194 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 9 1732 1048 75 30 54 chr5 150449070 150449238 -2088021 - B2_Mm2 SINE B2 -30 165 2 9 1732 243 0 0 0 chr5 150450163 150450190 -2087069 + (T)n Simple_repeat Simple_repeat 1 27 0 9 1732 423 0 0 0 chr5 150450957 150451004 -2086255 + (GA)n Simple_repeat Simple_repeat 2 48 0 9 1732 1845 158 148 11 chr5 150451112 150451490 -2085769 + RLTR23 LTR ERV1 1 430 0 9 1732 277 330 0 21 chr5 150452774 150452867 -2084392 - L2a LINE L2 -27 3399 3309 9 1732 1192 169 19 100 chr5 150453171 150453399 -2083860 - RLTR11B LTR ERVK -10 443 236 9 1732 234 0 0 0 chr5 150453399 150453425 -2083834 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 9 1732 1192 283 47 116 chr5 150453425 150453573 -2083686 - RLTR11B LTR ERVK -237 290 156 9 1732 213 65 0 0 chr5 150453573 150453604 -2083655 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9 1732 1084 72 14 0 chr5 150453614 150453752 -2083507 - B1_Mus1 SINE Alu -8 140 1 9 1732 1386 65 43 0 chr5 150453752 150453775 -2083484 - B2_Mm1t SINE B2 0 193 163 9 1732 243 0 0 0 chr5 150453775 150453802 -2083457 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 9 1732 1386 65 43 0 chr5 150453802 150453961 -2083298 - B2_Mm1t SINE B2 -31 162 4 9 1732 1361 105 0 5 chr5 150453961 150454153 -2083106 - B2_Mm2 SINE B2 -3 192 2 9 1732 895 109 2 44 chr5 150454153 150454305 -2082954 - RLTR11B LTR ERVK -372 155 2 9 1732 299 253 106 32 chr5 150454365 150454459 -2082800 - L2a LINE L2 -521 2898 2798 9 1732 488 183 133 30 chr5 150454494 150454629 -2082630 - B1_Mur1 SINE Alu 0 149 1 9 1732 320 261 144 98 chr5 150454498 150454651 -2082608 - B4 SINE B4 -68 224 65 9 1732 1290 14 0 0 chr5 150454678 150454823 -2082436 + B1_Mm SINE Alu 1 145 -2 9 1732 1218 277 3 3 chr5 150454856 150455146 -2082113 + B4A SINE B4 2 291 -1 9 1732 1436 189 135 77 chr5 150455148 150455497 -2081762 - ORR1D1 LTR MaLR 0 374 6 9 1732 411 21 0 0 chr5 150455497 150455545 -2081714 + (CA)n Simple_repeat Simple_repeat 2 49 0 9 1732 711 207 14 0 chr5 150455597 150455737 -2081522 + B1_Mur3 SINE Alu 2 143 -6 9 1732 4588 53 2 14 chr5 150455926 150456497 -2080762 - LTRIS2 LTR ERV1 0 564 1 9 1732 2245 111 50 186 chr5 150457213 150457735 -2079524 + RLTR11B LTR ERVK 3 453 0 9 1732 486 278 109 97 chr5 150457775 150458022 -2079237 - ORSL DNA Tip100 -24 251 2 9 1732 1129 272 130 0 chr5 150458252 150458575 -2078684 + ORR1D2 LTR MaLR 1 365 -5 9 1732 678 122 0 0 chr5 150459109 150459216 -2078043 + (TTCC)n Simple_repeat Simple_repeat 3 109 0 9 1732 354 271 166 51 chr5 150459482 150459657 -2077602 + MTC LTR MaLR 1 195 -164 9 1732 339 197 0 0 chr5 150459679 150459740 -2077519 - MTD LTR MaLR 0 419 359 9 1732 3450 23 5 18 chr5 150459740 150460141 -2077118 + MTA_Mm LTR MaLR 1 396 0 9 1732 2597 73 11 3 chr5 150460141 150460498 -2076761 + MTA_Mm-int LTR MaLR 1 360 -738 9 1732 391 97 113 0 chr5 150460475 150460537 -2076722 - MT-int LTR MaLR -704 394 326 9 1732 838 79 0 17 chr5 150460519 150460635 -2076624 - B2_Mm2 SINE B2 -80 115 2 9 1732 800 147 73 78 chr5 150460734 150460926 -2076333 - B2_Mm2 SINE B2 0 195 5 9 1732 865 182 117 6 chr5 150460879 150461050 -2076209 + MTC LTR MaLR 232 421 0 9 1732 921 170 57 15 chr5 150461143 150461437 -2075822 - RMER10B LTR ERVL 0 398 1 9 1732 850 135 126 19 chr5 150461467 150461617 -2075642 + URR1A DNA MER1_type 2 168 -58 9 1732 852 215 13 219 chr5 150461617 150462093 -2075166 + RMER17C LTR ERVK 1 378 -32 9 1732 304 148 16 32 chr5 150462094 150462157 -2075102 + URR1A DNA MER1_type 164 225 -1 9 1732 603 296 48 14 chr5 150462168 150462377 -2074882 - LTR48B LTR ERV1 -280 364 149 9 1732 26 0 0 0 chr5 150462377 150462403 -2074856 + GC_rich Low_complexity Low_complexity 1 26 0 9 1732 1096 166 30 10 chr5 150464079 150464280 -2072979 + B3 SINE B2 9 213 -3 9 1732 356 246 129 17 chr5 150464615 150464731 -2072528 + Tigger7 DNA MER2_type 41 169 -2322 9 1732 317 24 24 0 chr5 150464777 150464819 -2072440 + (TTC)n Simple_repeat Simple_repeat 3 45 0 9 1732 1166 68 0 7 chr5 150464819 150464968 -2072291 - B1_Mus1 SINE Alu 0 148 1 9 1732 309 312 35 35 chr5 150464971 150465084 -2072175 + Tigger7 DNA MER2_type 2369 2481 -10 9 1732 1145 95 0 0 chr5 150465513 150465661 -2071598 - B1_Mus1 SINE Alu 0 148 1 9 1732 859 232 44 39 chr5 150465677 150465883 -2071376 - B3 SINE B2 -9 207 1 9 1732 966 251 122 42 chr5 150466695 150467007 -2070252 + MER21B LTR ERV1 1 337 -526 9 1732 657 261 151 26 chr5 150467647 150467879 -2069380 + MER21B LTR ERV1 479 739 -124 9 1732 180 0 0 0 chr5 150467995 150468015 -2069244 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 9 1732 431 56 0 0 chr5 150468015 150468069 -2069190 - B1_Mm SINE Alu -3 144 91 9 1732 1324 53 6 0 chr5 150468068 150468237 -2069022 - B2_Mm2 SINE B2 -25 170 1 9 1732 809 223 5 79 chr5 150468313 150468527 -2068732 - B3A SINE B2 0 198 1 9 1732 250 354 56 60 chr5 150468904 150469264 -2067995 - MTEb LTR MaLR 0 379 4 9 1733 358 156 36 72 chr5 150470700 150470783 -2066476 - ID4_ SINE ID -3 80 1 9 1733 204 40 0 0 chr5 150470929 150470954 -2066305 + (CAGT)n Simple_repeat Simple_repeat 4 28 0 9 1733 293 47 0 23 chr5 150471066 150471110 -2066149 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 9 1733 266 215 15 30 chr5 150471115 150471182 -2066077 + MTE2b LTR MaLR 294 359 -20 9 1733 240 312 43 86 chr5 150471510 150471650 -2065609 - RLTR41 LTR ERV1 -62 384 251 9 1733 1176 302 92 33 chr5 150472412 150473046 -2064213 - Charlie1 DNA MER1_type -5 2776 2106 9 1733 2320 223 26 54 chr5 150473039 150473230 -2064029 + RMER15 LTR ERVL 12 191 -384 9 1733 1234 131 12 122 chr5 150473230 150473483 -2063776 + URR1B DNA MER1_type 1 225 0 9 1733 2320 223 26 54 chr5 150473483 150473868 -2063391 + RMER15 LTR ERVL 192 571 -4 9 1733 879 289 59 142 chr5 150473879 150474436 -2062823 - Charlie1 DNA MER1_type -668 2113 1603 9 1733 245 289 0 126 chr5 150474528 150474623 -2062636 - Charlie1 DNA MER1_type -2665 116 34 9 1733 1047 198 107 100 chr5 150474652 150475024 -2062235 - MTE2a LTR MaLR -13 406 18 9 1733 21 0 0 0 chr5 150475687 150475708 -2061551 + AT_rich Low_complexity Low_complexity 1 21 0 9 1733 3192 143 33 128 chr5 150476648 150477369 -2059890 - RMER6A LTR ERVK 0 756 104 9 1733 593 273 11 69 chr5 150479363 150479552 -2057707 - B3A SINE B2 -18 180 3 9 1733 21 0 0 0 chr5 150480965 150480986 -2056273 + GC_rich Low_complexity Low_complexity 1 21 0 9 1733 196 270 30 110 chr5 150482372 150482472 -2054787 + L4 LINE RTE 349 440 -1589 9 1733 941 159 108 81 chr5 150483120 150483305 -2053954 + B3 SINE B2 1 190 -5 9 1733 389 256 106 62 chr5 150484072 150484251 -2053008 + MLT1J LTR MaLR 242 428 -84 9 1733 312 340 0 11 chr5 150484385 150484480 -2052779 - LTR84a LTR ERVL -2 755 662 9 1733 260 53 26 0 chr5 150484514 150484552 -2052707 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 9 1733 187 255 39 19 chr5 150484849 150484901 -2052358 - L2c LINE L2 -1 3386 3334 9 1733 253 247 113 168 chr5 150485069 150485144 -2052115 + MER20 DNA MER1_type 44 133 -86 9 1733 1105 153 108 47 chr5 150485144 150485356 -2051903 - URR1B DNA MER1_type 0 225 1 9 1733 253 247 113 168 chr5 150485356 150485420 -2051839 + MER20 DNA MER1_type 134 182 -37 9 1733 2548 80 6 0 chr5 150485420 150485745 -2051514 + ORR1A2 LTR MaLR 1 327 0 9 1733 253 247 113 168 chr5 150485745 150485789 -2051470 + MER20 DNA MER1_type 183 218 -1 9 1733 183 188 0 0 chr5 150485890 150485938 -2051321 + G-rich Low_complexity Low_complexity 1 48 0 9 1733 1426 74 11 0 chr5 150486319 150486508 -2050751 + B2_Mm1t SINE B2 2 192 -1 9 1733 589 203 109 0 chr5 150486634 150486762 -2050497 + B3A SINE B2 1 142 -56 9 1733 216 0 0 0 chr5 150486779 150486803 -2050456 + (CA)n Simple_repeat Simple_repeat 1 24 0 9 1733 1013 83 8 8 chr5 150487069 150487202 -2050057 - B1_Mus2 SINE Alu -13 134 2 9 1733 184 30 61 0 chr5 150487789 150487822 -2049437 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 9 1733 21 0 0 0 chr5 150488019 150488040 -2049219 + AT_rich Low_complexity Low_complexity 1 21 0 9 1733 852 160 234 0 chr5 150488040 150488215 -2049044 - B3 SINE B2 0 216 1 9 1733 663 13 0 0 chr5 150489022 150489098 -2048161 + (GA)n Simple_repeat Simple_repeat 1 76 0 9 1733 1717 188 79 79 chr5 150489190 150489300 -2047959 + MTD LTR MaLR 5 116 -303 9 1733 285 29 0 0 chr5 150489300 150489334 -2047925 + (ATTG)n Simple_repeat Simple_repeat 3 36 0 9 1733 1717 188 79 79 chr5 150489334 150489402 -2047857 + MTD LTR MaLR 117 208 -211 9 1733 1402 71 16 5 chr5 150489402 150489586 -2047673 + B2_Mm2 SINE B2 1 186 -9 9 1733 1717 188 79 79 chr5 150489586 150489811 -2047448 + MTD LTR MaLR 209 408 -11 9 1733 671 152 115 32 chr5 150489818 150489831 -2047428 - B2_Mm1a SINE B2 -23 170 161 9 1733 198 0 0 0 chr5 150489831 150489853 -2047406 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 9 1733 793 76 44 10 chr5 150489853 150489995 -2047264 - B2_Mm2 SINE B2 -33 160 2 9 1733 1557 199 118 6 chr5 150490005 150490369 -2046890 - MTD LTR MaLR -14 405 1 9 1733 489 196 176 46 chr5 150491155 150491284 -2045975 + B3A SINE B2 5 133 -65 9 1733 258 105 0 0 chr5 150491296 150491334 -2045925 + (TG)n Simple_repeat Simple_repeat 1 38 0 9 1733 1317 78 0 0 chr5 150492821 150493000 -2044259 + (GGA)n Simple_repeat Simple_repeat 1 179 0 9 1733 212 133 44 0 chr5 150493000 150493045 -2044214 + G-rich Low_complexity Low_complexity 4 50 0 9 1733 237 33 0 0 chr5 150493159 150493189 -2044070 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 9 1733 491 193 54 27 chr5 150493330 150493442 -2043817 - PB1D10 SINE Alu 0 117 3 9 1733 237 283 8 124 chr5 150493442 150493482 -2043777 - MT2B2 LTR ERVL -424 160 135 9 1733 213 132 0 0 chr5 150494130 150494168 -2043091 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 9 1733 24 53 0 0 chr5 150494783 150494821 -2042438 + AT_rich Low_complexity Low_complexity 1 38 0 9 1733 183 80 0 0 chr5 150495017 150495042 -2042217 + (A)n Simple_repeat Simple_repeat 1 25 0 9 1733 324 263 53 0 chr5 150495491 150495567 -2041692 - ID4 SINE ID 0 83 4 9 1733 939 214 5 21 chr5 150495925 150496111 -2041148 - B3 SINE B2 -28 188 6 9 1733 856 68 15 0 chr5 150496118 150496251 -2041008 + (TC)n Simple_repeat Simple_repeat 2 136 0 1 1733 457 250 25 82 chr5 150496252 150496374 -2040885 - B1_Mur1 SINE Alu -33 116 2 1 1733 216 0 0 0 chr5 150496619 150496643 -2040616 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 1 1733 789 230 46 0 chr5 150496681 150496855 -2040404 - B3A SINE B2 -16 182 1 1 1733 294 217 0 0 chr5 150497013 150497082 -2040177 + (TG)n Simple_repeat Simple_repeat 2 70 0 1 1733 1177 211 135 33 chr5 150497083 150497417 -2039842 + ORR1D2 LTR MaLR 3 370 0 1 1733 187 182 23 0 chr5 150497596 150497640 -2039619 - L2a LINE L2 0 3426 3382 1 1733 351 121 0 0 chr5 150498712 150498770 -2038489 + (TG)n Simple_repeat Simple_repeat 2 59 0 1 1733 220 170 0 41 chr5 150499277 150499326 -2037933 + (TATG)n Simple_repeat Simple_repeat 1 47 0 1 1733 1712 87 0 9 chr5 150499336 150499568 -2037691 + ORR1A3 LTR MaLR 1 230 -96 1 1733 1010 287 55 25 chr5 150499581 150499856 -2037403 - B4A SINE B4 -1 291 9 1 1733 466 274 103 0 chr5 150499847 150499993 -2037266 - B4 SINE B4 -59 233 73 1 1733 219 171 0 0 chr5 150500000 150500035 -2037224 - B4A SINE B4 -247 45 11 1 1733 450 265 120 91 chr5 150500157 150500263 -2036996 - B4A SINE B4 -43 249 146 2 1733 1357 70 21 16 chr5 150500263 150500452 -2036807 - B2_Mm2 SINE B2 -1 194 5 3 1733 450 265 120 91 chr5 150500452 150500586 -2036673 - B4A SINE B4 -147 145 2 2 1733 516 110 0 52 chr5 150500960 150501075 -2036184 + (TCTA)n Simple_repeat Simple_repeat 3 111 0 4 1733 889 176 162 26 chr5 150501131 150501298 -2035961 + Lx4B LINE L1 6798 6965 -93 5 1733 744 94 0 0 chr5 150501298 150501404 -2035855 + (GAA)n Simple_repeat Simple_repeat 2 107 0 6 1733 889 176 162 26 chr5 150501404 150501464 -2035795 + Lx4B LINE L1 6966 7055 -3 5 1733 228 362 39 22 chr5 150501621 150501802 -2035457 - MIRc SINE MIR 0 268 85 7 1733 617 175 229 24 chr5 150502001 150502171 -2035088 - B3 SINE B2 -5 211 7 8 1733 21 0 0 0 chr5 150502608 150502629 -2034630 + AT_rich Low_complexity Low_complexity 1 21 0 9 1733 204 286 115 54 chr5 150502896 150503044 -2034215 + MIRc SINE MIR 6 162 -106 1 1733 556 227 0 0 chr5 150503846 150503956 -2033303 - MLT1A1 LTR MaLR 0 408 299 1 1733 630 0 0 0 chr5 150504156 150504226 -2033033 + (TCCC)n Simple_repeat Simple_repeat 2 71 0 1 1733 1427 33 0 11 chr5 150504234 150504416 -2032843 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1 1733 776 263 82 5 chr5 150504416 150504602 -2032657 - B3 SINE B2 -14 202 1 1 1733 837 139 2 1 chr5 150504623 150504761 -2032498 - B1_Mus1 SINE Alu -7 142 4 1 1733 475 207 68 115 chr5 150504761 150504842 -2032417 - MT2B LTR ERVL -447 154 83 1 1733 1961 134 89 20 chr5 150504889 150505239 -2032020 - ORR1D1 LTR MaLR 0 374 1 1 1733 248 284 169 11 chr5 150505264 150505353 -2031906 + LTRIS_Mm LTR ERV1 293 395 -87 1 1733 1082 194 29 0 chr5 150505419 150505625 -2031634 + B3 SINE B2 5 216 0 1 1733 226 235 129 29 chr5 150506107 150506177 -2031082 - B4 SINE B4 -207 85 9 2 1733 999 149 192 6 chr5 150506203 150506385 -2030874 - B3 SINE B2 0 216 1 2 1733 420 20 0 0 chr5 150506389 150506438 -2030821 + (CA)n Simple_repeat Simple_repeat 2 50 0 2 1733 399 289 0 11 chr5 150506451 150506542 -2030717 - B1F2 SINE Alu -57 92 3 2 1733 1663 229 72 16 chr5 150508158 150508544 -2028715 + MTD LTR MaLR 5 412 -7 2 1733 1330 168 10 0 chr5 150508930 150509138 -2028121 - B3 SINE B2 -6 210 1 2 1733 1378 132 31 18 chr5 150509198 150509421 -2027838 + URR1A DNA MER1_type 1 226 0 2 1733 25 31 0 0 chr5 150509620 150509652 -2027607 + AT_rich Low_complexity Low_complexity 1 32 0 2 1733 521 319 58 84 chr5 150510531 150510877 -2026382 - ORR1E LTR MaLR -20 339 3 2 1733 270 243 28 14 chr5 150510954 150511025 -2026234 + MTEb LTR MaLR 293 364 -15 2 1733 335 355 126 21 chr5 150511081 150511320 -2025939 - MLT1B LTR MaLR -125 265 2 3 1733 1101 186 9 81 chr5 150511532 150511754 -2025505 + B3 SINE B2 2 207 -9 3 1733 415 344 83 4 chr5 150512604 150512832 -2024427 - Tigger7 DNA MER2_type -2220 271 26 3 1733 238 226 0 35 chr5 150512855 150512942 -2024317 + CT-rich Low_complexity Low_complexity 1 84 0 3 1733 455 248 55 0 chr5 150512942 150513051 -2024208 - PB1D9 SINE Alu -2 118 4 3 1733 192 97 0 0 chr5 150513078 150513109 -2024150 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 1733 212 256 0 11 chr5 150513124 150513211 -2024048 + (TA)n Simple_repeat Simple_repeat 2 87 0 3 1733 186 191 0 0 chr5 150513245 150513287 -2023972 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 1733 315 0 0 0 chr5 150513313 150513348 -2023911 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1733 567 0 0 0 chr5 150513583 150513646 -2023613 + (GA)n Simple_repeat Simple_repeat 2 64 0 3 1733 515 246 12 0 chr5 150513700 150513867 -2023392 + (TATATG)n Simple_repeat Simple_repeat 6 174 0 3 1733 195 242 0 0 chr5 150513886 150513948 -2023311 + (TATG)n Simple_repeat Simple_repeat 1 62 0 4 1733 637 266 19 68 chr5 150514070 150514299 -2022960 - B4 SINE B4 -48 244 27 4 1733 1232 144 39 5 chr5 150514770 150514973 -2022286 - B3 SINE B2 -5 211 2 4 1733 461 321 81 4 chr5 150514984 150515231 -2022028 - L1MB2 LINE L1 -53 6118 5853 4 1733 962 217 17 102 chr5 150515253 150515489 -2021770 + B3 SINE B2 1 216 0 4 1733 206 98 49 0 chr5 150517936 150517977 -2019282 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 4 1733 300 306 0 0 chr5 150518887 150518949 -2018310 - L1MEg LINE L1 -4141 1943 1882 4 1733 724 168 88 0 chr5 150519190 150519327 -2017932 - B1_Mur1 SINE Alu 0 149 1 4 1733 38 22 0 0 chr5 150519579 150519624 -2017635 + AT_rich Low_complexity Low_complexity 1 45 0 4 1733 1095 56 171 24 chr5 150519677 150519841 -2017418 - B2_Mm2 SINE B2 -6 189 2 4 1733 670 196 30 37 chr5 150519924 150520088 -2017171 - RSINE1 SINE B4 0 165 3 5 1733 395 250 107 6 chr5 150520306 150520483 -2016776 - MTD LTR MaLR -65 354 129 5 1733 770 217 16 43 chr5 150520520 150520744 -2016515 - ORR1D2 LTR MaLR 0 374 158 5 1733 207 150 0 48 chr5 150520744 150520786 -2016473 + GA-rich Low_complexity Low_complexity 1 40 0 5 1733 191 136 0 43 chr5 150520827 150520873 -2016386 + GA-rich Low_complexity Low_complexity 1 44 0 5 1733 259 279 0 12 chr5 150520885 150520965 -2016294 + G-rich Low_complexity Low_complexity 2 80 0 5 1733 324 70 0 0 chr5 150520983 150521026 -2016233 + (GA)n Simple_repeat Simple_repeat 1 43 0 5 1733 549 278 35 107 chr5 150521026 150521187 -2016072 - ORR1D2 LTR MaLR -187 183 20 5 1733 1553 52 11 0 chr5 150521187 150521378 -2015881 - B2_Mm1t SINE B2 0 193 1 5 1733 549 278 35 107 chr5 150521378 150521413 -2015846 - ORR1D2 LTR MaLR -351 19 1 5 1733 199 337 134 39 chr5 150521471 150521650 -2015609 - MIRb SINE MIR -48 220 25 5 1733 821 67 146 24 chr5 150522049 150522172 -2015087 - B1_Mus1 SINE Alu 0 148 11 5 1733 268 198 25 193 chr5 150522073 150522192 -2015067 - MT2B LTR ERVL -351 250 152 5 1733 1014 158 28 11 chr5 150522446 150522625 -2014634 + B3 SINE B2 1 182 -34 6 1733 213 255 0 68 chr5 150522867 150522926 -2014333 + ID4_ SINE ID 3 57 -26 6 1733 270 206 0 0 chr5 150523513 150523576 -2013683 + CT-rich Low_complexity Low_complexity 3 65 0 6 1733 424 247 53 11 chr5 150523587 150523681 -2013578 - B1F SINE Alu -42 107 10 6 1733 453 122 0 0 chr5 150523704 150523778 -2013481 + (TG)n Simple_repeat Simple_repeat 1 74 0 6 1733 626 250 132 25 chr5 150523804 150524046 -2013213 - B4A SINE B4 -20 272 5 6 1733 221 243 10 81 chr5 150524047 150524183 -2013076 - ID2 SINE ID -25 127 4 6 1733 984 150 0 13 chr5 150524237 150524386 -2012873 + B1_Mur4 SINE Alu 3 149 -1 6 1733 393 22 0 0 chr5 150524588 150524634 -2012625 + (TG)n Simple_repeat Simple_repeat 1 46 0 6 1733 454 235 0 38 chr5 150524634 150524740 -2012519 - RSINE1 SINE B4 -62 103 2 6 1733 1558 189 67 30 chr5 150525334 150525653 -2011606 + ORR1D1 LTR MaLR 1 337 -37 7 1733 417 39 0 0 chr5 150525653 150525704 -2011555 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 7 1733 1108 72 0 0 chr5 150525704 150525842 -2011417 - B1_Mus1 SINE Alu -10 138 1 7 1733 1558 189 67 30 chr5 150525842 150525882 -2011377 + ORR1D1 LTR MaLR 338 373 -1 7 1733 290 206 44 0 chr5 150525933 150526001 -2011258 + ORR1D1 LTR MaLR 291 361 -13 7 1733 1005 114 107 11 chr5 150526011 150526188 -2011071 + B2_Mm2 SINE B2 2 195 0 7 1733 1438 73 16 5 chr5 150527235 150527428 -2009831 - B2_Mm2 SINE B2 0 195 1 7 1733 273 98 0 0 chr5 150527784 150527825 -2009434 + (TGGGGG)n Simple_repeat Simple_repeat 3 43 0 7 1733 1246 137 59 0 chr5 150528293 150528497 -2008762 - B3 SINE B2 0 216 1 7 1733 909 52 0 0 chr5 150528533 150528648 -2008611 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 7 1733 442 0 17 17 chr5 150528661 150528720 -2008539 + (TA)n Simple_repeat Simple_repeat 2 60 0 7 1733 439 137 50 23 chr5 150528727 150528836 -2008423 - B2_Mm2 SINE B2 -82 116 2 8 1733 1204 103 11 11 chr5 150528836 150529013 -2008246 - B2_Mm1t SINE B2 -14 179 3 8 1733 282 56 0 0 chr5 150531745 150531781 -2005478 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 8 1733 1037 179 69 10 chr5 150531830 150532033 -2005226 + B3 SINE B2 1 215 -1 8 1733 3915 83 54 4 chr5 150533021 150533555 -2003704 - LTRIS2 LTR ERV1 -3 561 1 8 1733 692 250 16 44 chr5 150533661 150533871 -2003388 + B3 SINE B2 14 216 0 8 1733 35 63 0 0 chr5 150533980 150534043 -2003216 + AT_rich Low_complexity Low_complexity 1 63 0 8 1733 980 274 39 8 chr5 150534045 150534299 -2002960 - Lx5 LINE L1 -25 7025 6764 8 1733 951 48 8 16 chr5 150534299 150534426 -2002833 + B1_Mm SINE Alu 1 126 -21 8 1733 1026 214 45 0 chr5 150534435 150534636 -2002623 + B3 SINE B2 1 210 -6 8 1733 295 297 129 0 chr5 150534725 150534826 -2002433 + RLTR40 LTR ERVK 651 764 -53 9 1733 1252 47 0 0 chr5 150535655 150535803 -2001456 - B1_Mus1 SINE Alu 0 148 1 9 1733 787 207 31 154 chr5 150535803 150536089 -2001170 - RMER1C Other Other -8 1334 1084 9 1733 745 267 44 0 chr5 150536097 150536303 -2000956 - B3 SINE B2 0 216 2 9 1733 449 221 157 31 chr5 150536455 150536614 -2000645 + B4 SINE B4 2 180 -112 9 1733 664 128 10 0 chr5 150536592 150536694 -2000565 - ORR1D1 LTR MaLR -266 108 6 9 1733 3280 163 132 92 chr5 150536906 150537779 -1999480 - RMER13B LTR ERVK 0 908 1 9 1733 448 68 27 0 chr5 150538466 150538539 -1998720 + (TG)n Simple_repeat Simple_repeat 1 75 0 9 1733 244 85 0 60 chr5 150538689 150538739 -1998520 + (TCCC)n Simple_repeat Simple_repeat 1 47 0 9 1733 490 227 23 11 chr5 150538752 150538926 -1998333 + CT-rich Low_complexity Low_complexity 3 178 0 9 1733 222 37 0 0 chr5 150538964 150538991 -1998268 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 1 1733 563 182 6 59 chr5 150539556 150539913 -1997346 + (CA)n Simple_repeat Simple_repeat 1 337 0 1 1733 190 195 0 54 chr5 150539956 150540048 -1997211 + (CA)n Simple_repeat Simple_repeat 1 87 0 1 1733 286 218 0 68 chr5 150540067 150540259 -1997000 + (CA)n Simple_repeat Simple_repeat 1 179 0 1 1733 1581 232 94 5 chr5 150540490 150540863 -1996396 - MTD LTR MaLR 0 419 14 1 1733 232 258 82 51 chr5 150540892 150540990 -1996269 - MamGypLTR2 LTR Gypsy -903 286 186 1 1733 258 32 0 0 chr5 150542998 150543029 -1994230 + (TG)n Simple_repeat Simple_repeat 1 31 0 1 1733 711 238 37 30 chr5 150543379 150543567 -1993692 + B3 SINE B2 20 191 -4 1 1733 798 209 40 1 chr5 150544148 150544303 -1992956 + B3A SINE B2 7 165 -33 1 1733 306 0 0 0 chr5 150544303 150544337 -1992922 + (CA)n Simple_repeat Simple_repeat 2 35 0 1 1733 493 217 85 117 chr5 150544337 150544369 -1992890 + B2_Mm2 SINE B2 161 188 -7 1 1733 222 37 0 0 chr5 150544441 150544468 -1992791 + (TC)n Simple_repeat Simple_repeat 2 28 0 1 1733 710 228 118 10 chr5 150545111 150545306 -1991953 - B3 SINE B2 0 216 1 1 1733 207 0 0 0 chr5 150546014 150546037 -1991222 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1733 189 74 0 0 chr5 150546386 150546413 -1990846 + (A)n Simple_repeat Simple_repeat 1 27 0 1 1733 236 16 115 0 chr5 150546607 150546668 -1990591 + (TTG)n Simple_repeat Simple_repeat 1 68 0 1 1733 243 156 0 62 chr5 150547234 150547282 -1989977 + B4A SINE B4 169 213 -79 1 1733 378 0 0 0 chr5 150547282 150547324 -1989935 + (GA)n Simple_repeat Simple_repeat 1 42 0 1 1733 245 255 0 18 chr5 150547364 150547420 -1989839 + (CA)n Simple_repeat Simple_repeat 2 56 0 1 1733 21 0 0 0 chr5 150547426 150547447 -1989812 + AT_rich Low_complexity Low_complexity 1 21 0 1 1733 1040 212 5 10 chr5 150547450 150547645 -1989614 - B3 SINE B2 -19 197 4 1 1733 947 73 0 0 chr5 150548185 150548308 -1988951 - B1_Mus1 SINE Alu -25 123 1 1 1733 249 291 13 26 chr5 150548308 150548352 -1988907 - ORR1B1-int LTR MaLR -863 646 605 1 1733 409 270 121 48 chr5 150548562 150548768 -1988491 - ID_B1 SINE B4 -3 221 1 1 1733 1154 88 31 0 chr5 150548690 150548849 -1988410 + B2_Mm2 SINE B2 1 164 -31 1 1733 495 99 56 0 chr5 150548850 150548921 -1988338 - MTD LTR MaLR -9 410 336 1 1733 1090 89 7 0 chr5 150549446 150549592 -1987667 + B1_Mus1 SINE Alu 1 147 -1 1 1733 267 259 68 34 chr5 150549693 150549781 -1987478 + L1MEc LINE L1 496 586 -5814 1 1733 519 95 0 0 chr5 150549823 150549897 -1987362 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1733 340 274 125 10 chr5 150549910 150550102 -1987157 + L1MEc LINE L1 958 1171 -5229 1 1733 1033 213 25 0 chr5 150550246 150550448 -1986811 - B3 SINE B2 -7 209 3 1 1733 233 254 0 16 chr5 150550470 150550534 -1986725 - L1M5 LINE L1 -493 5686 5624 1 1733 22 35 0 0 chr5 150551302 150551331 -1985928 + AT_rich Low_complexity Low_complexity 1 29 0 1 1733 874 194 79 16 chr5 150551335 150551524 -1985735 - B3 SINE B2 -7 209 9 1 1733 291 141 0 0 chr5 150551532 150551596 -1985663 + (T)n Simple_repeat Simple_repeat 1 64 0 1 1733 389 312 0 28 chr5 150552383 150552525 -1984734 + CT-rich Low_complexity Low_complexity 5 142 0 1 1733 227 146 182 0 chr5 150552527 150552582 -1984677 - B1_Mm SINE Alu -21 126 62 1 1733 375 296 127 32 chr5 150553185 150553342 -1983917 - MER2 DNA MER2_type -15 330 159 1 1733 254 290 136 8 chr5 150553349 150553474 -1983785 - B1F1 SINE Alu -8 141 1 1 1733 315 211 89 59 chr5 150554288 150554389 -1982870 - MLT1A1 LTR MaLR 0 408 305 1 1733 308 279 0 0 chr5 150554548 150554616 -1982643 - Lx8 LINE L1 -996 6477 6410 1 1733 240 379 11 0 chr5 150554895 150554990 -1982269 + L2c LINE L2 3242 3337 -50 1 1733 911 112 0 7 chr5 150555276 150555420 -1981839 + (TTTTC)n Simple_repeat Simple_repeat 3 145 0 1 1733 453 204 64 18 chr5 150555445 150555555 -1981704 + B3 SINE B2 1 115 -101 1 1733 1014 128 0 7 chr5 150555847 150555996 -1981263 + B1_Mus1 SINE Alu 1 148 0 1 1733 1038 215 91 73 chr5 150556024 150556391 -1980868 - MTD LTR MaLR -14 405 8 1 1733 1017 174 102 5 chr5 150556862 150557059 -1980200 - B3 SINE B2 0 216 1 1 1733 409 183 15 38 chr5 150557089 150557220 -1980039 + CT-rich Low_complexity Low_complexity 4 131 0 1 1733 306 0 0 0 chr5 150558413 150558447 -1978812 + (A)n Simple_repeat Simple_repeat 1 34 0 1 1733 562 207 68 8 chr5 150558586 150558703 -1978556 + B3 SINE B2 42 165 -51 1 1733 2019 148 58 0 chr5 150558704 150559069 -1978190 + ORR1B1 LTR MaLR 1 386 -8 1 1733 1471 58 27 0 chr5 150559209 150559397 -1977862 + B2_Mm2 SINE B2 3 195 0 1 1733 357 296 0 0 chr5 150559753 150560035 -1977224 + (CAGCC)n Simple_repeat Simple_repeat 1 282 0 1 1733 503 263 28 28 chr5 150560382 150560523 -1976736 + B1_Mur1 SINE Alu 9 149 0 1 1733 193 310 70 0 chr5 150560634 150560705 -1976554 + L2b LINE L2 3250 3325 -50 1 1733 2740 209 73 50 chr5 150561081 150561452 -1975807 - Lx7 LINE L1 0 7696 7324 1 1733 369 0 0 0 chr5 150561452 150561493 -1975766 + (CA)n Simple_repeat Simple_repeat 2 42 0 1 1733 2740 209 73 50 chr5 150561493 150561863 -1975396 - Lx7 LINE L1 -373 7323 6938 1 1733 267 93 0 0 chr5 150561964 150562007 -1975252 + (T)n Simple_repeat Simple_repeat 1 43 0 1 1733 1005 182 66 19 chr5 150562575 150562788 -1974471 + URR1A DNA MER1_type 1 223 -3 1 1733 239 79 26 0 chr5 150564092 150564130 -1973129 + (CCCCCT)n Simple_repeat Simple_repeat 5 43 0 1 1733 206 121 0 0 chr5 150564456 150564489 -1972770 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1733 621 0 0 0 chr5 150565220 150565289 -1971970 + (GGGGA)n Simple_repeat Simple_repeat 2 70 0 1 1733 498 218 155 7 chr5 150565651 150565799 -1971460 - B3A SINE B2 -16 182 13 1 1733 500 80 40 0 chr5 150565910 150566010 -1971249 + (TG)n Simple_repeat Simple_repeat 1 104 0 1 1733 237 128 0 0 chr5 150566202 150566249 -1971010 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 1 1733 1195 188 0 9 chr5 150566729 150566944 -1970315 - B3 SINE B2 -3 213 1 1 1733 268 269 20 70 chr5 150567397 150567497 -1969762 + L1M3 LINE L1 5687 5781 -390 1 1733 3871 220 13 22 chr5 150567841 150568693 -1968566 + Lx7 LINE L1 6525 7368 -328 1 1733 381 174 31 0 chr5 150568714 150568812 -1968447 + (TA)n Simple_repeat Simple_repeat 2 102 0 1 1733 1079 106 6 23 chr5 150568813 150568843 -1968416 - B2_Mm2 SINE B2 -24 171 145 1 1733 378 0 0 0 chr5 150568843 150568885 -1968374 + (CA)n Simple_repeat Simple_repeat 2 43 0 1 1733 1079 106 6 23 chr5 150568885 150569028 -1968231 - B2_Mm2 SINE B2 -51 144 2 1 1733 22 35 0 0 chr5 150569028 150569057 -1968202 + AT_rich Low_complexity Low_complexity 1 29 0 1 1733 866 237 51 48 chr5 150569062 150569231 -1968028 + Lx7 LINE L1 7376 7543 -153 1 1733 180 111 0 0 chr5 150569231 150569258 -1968001 + (CACAT)n Simple_repeat Simple_repeat 1 27 0 1 1733 866 237 51 48 chr5 150569258 150569403 -1967856 + Lx7 LINE L1 7544 7690 -6 1 1733 1216 209 157 18 chr5 150569443 150569774 -1967485 + MTD LTR MaLR 12 388 -31 1 1733 213 343 128 0 chr5 150570639 150570741 -1966518 - MIRm SINE MIR -8 268 154 1 1733 1136 284 62 38 chr5 150571174 150571675 -1965584 + L1MA4A LINE L1 5420 5932 -371 1 1733 468 0 0 0 chr5 150571680 150571732 -1965527 + (CA)n Simple_repeat Simple_repeat 2 53 0 1 1733 254 29 29 0 chr5 150571750 150571785 -1965474 + (GGA)n Simple_repeat Simple_repeat 1 36 0 1 1733 358 235 0 12 chr5 150571854 150571936 -1965323 - MLT1D LTR MaLR -314 191 111 1 1733 1788 145 3 24 chr5 150572368 150572664 -1964595 + Lx4B LINE L1 6510 6799 -259 1 1733 235 65 0 0 chr5 150572682 150572713 -1964546 - RMER2 LTR ERV1 0 567 537 1 1733 225 154 0 0 chr5 150572794 150572833 -1964426 + T-rich Low_complexity Low_complexity 1 39 0 1 1733 1251 41 0 0 chr5 150572833 150572979 -1964280 - B1_Mus2 SINE Alu 0 147 2 1 1733 3179 73 34 42 chr5 150572979 150573481 -1963778 - RMER2 LTR ERV1 -69 498 1 1 1733 987 188 58 33 chr5 150573485 150573727 -1963532 + Lx5 LINE L1 6803 7050 0 1 1733 230 136 23 0 chr5 150573742 150573786 -1963473 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 1 1733 514 255 27 34 chr5 150573787 150573933 -1963326 - RSINE1 SINE B4 -10 155 11 1 1733 717 272 87 138 chr5 150574028 150574420 -1962839 - MTE2b LTR MaLR 0 379 8 1 1733 879 83 0 0 chr5 150574441 150574562 -1962697 + (TTTC)n Simple_repeat Simple_repeat 2 122 0 1 1733 464 242 39 101 chr5 150574692 150574728 -1962531 - B2_Mm2 SINE B2 0 195 166 1 1733 306 87 0 0 chr5 150574728 150574774 -1962485 + (TG)n Simple_repeat Simple_repeat 1 46 0 1 1733 673 242 39 101 chr5 150574774 150574944 -1962315 - B3A SINE B2 -26 172 2 1 1733 2479 86 3 0 chr5 150575577 150575903 -1961356 - ORR1A2 LTR MaLR 0 327 1 1 1733 644 250 136 0 chr5 150576084 150576268 -1960991 - B3 SINE B2 -6 210 2 1 1733 483 207 0 0 chr5 150576631 150576781 -1960478 + (CA)n Simple_repeat Simple_repeat 1 150 0 1 1733 1842 160 74 30 chr5 150577167 150577560 -1959699 + RMER17C LTR ERVK 1 410 0 1 1733 362 134 132 12 chr5 150578317 150578400 -1958859 + B4A SINE B4 1 93 -199 1 1733 278 315 41 24 chr5 150579163 150579332 -1957927 - Charlie2b DNA MER1_type -162 2620 2449 1 1733 210 250 33 0 chr5 150579337 150579397 -1957862 + (TG)n Simple_repeat Simple_repeat 1 62 0 1 1733 596 290 36 5 chr5 150579405 150579599 -1957660 - B4A SINE B4 -4 288 89 1 1733 1454 212 7 14 chr5 150579604 150579998 -1957261 + MT2A LTR ERVL 1 438 -95 1 1733 519 17 0 0 chr5 150580228 150580288 -1956971 + (TG)n Simple_repeat Simple_repeat 1 60 0 1 1733 228 275 79 58 chr5 150580344 150580483 -1956776 - Charlie2b DNA MER1_type -370 2412 2271 1 1733 1099 203 31 36 chr5 150581123 150581348 -1955911 + URR1B DNA MER1_type 1 224 -1 1 1733 267 224 11 34 chr5 150581370 150581458 -1955801 + (TA)n Simple_repeat Simple_repeat 1 86 0 1 1733 917 204 35 5 chr5 150581458 150581655 -1955604 - B3 SINE B2 -13 203 1 1 1733 1655 196 179 35 chr5 150582452 150582938 -1954321 + RMER19B LTR ERVK 347 902 0 1 1733 252 208 21 0 chr5 150582975 150583023 -1954236 - ID4 SINE ID -30 53 5 2 1733 633 177 216 6 chr5 150583056 150583232 -1954027 + B3 SINE B2 1 213 -3 2 1733 331 340 0 91 chr5 150583321 150583496 -1953763 + MLT1A0 LTR MaLR 5 163 -202 2 1733 324 0 0 0 chr5 150583723 150583759 -1953500 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 1733 258 214 0 0 chr5 150583823 150583907 -1953352 + (CA)n Simple_repeat Simple_repeat 1 84 0 2 1733 577 245 113 89 chr5 150584614 150584896 -1952363 + MTD LTR MaLR 74 362 -57 2 1733 635 245 0 0 chr5 150585307 150585446 -1951813 - MTE-int LTR MaLR -313 1267 1129 2 1733 203 161 0 0 chr5 150585572 150585603 -1951656 + polypyrimidine Low_complexity Low_complexity 2 32 0 2 1733 315 0 0 0 chr5 150585605 150585640 -1951619 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2 1733 1041 106 7 0 chr5 150585643 150585785 -1951474 - B1_Mur4 SINE Alu -7 143 1 2 1733 200 195 0 0 chr5 150585830 150585871 -1951388 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 1733 906 233 53 80 chr5 150585973 150586395 -1950864 - RMER2 LTR ERV1 -21 546 35 2 1733 446 311 0 0 chr5 150586423 150586558 -1950701 - B4 SINE B4 -152 140 6 2 1733 1006 264 202 36 chr5 150586971 150587550 -1949709 - Lx8 LINE L1 0 7473 6799 2 1733 1490 196 65 43 chr5 150587619 150587806 -1949453 - ORR1C1 LTR MaLR -1 377 177 2 1733 225 0 0 0 chr5 150587806 150587831 -1949428 + (CAGA)n Simple_repeat Simple_repeat 2 26 0 2 1733 1490 196 65 43 chr5 150587831 150588012 -1949247 - ORR1C1 LTR MaLR -202 176 1 2 1733 357 323 63 68 chr5 150588015 150588519 -1948740 - L1M5 LINE L1 -2207 3939 3438 2 1733 555 141 0 0 chr5 150588994 150589086 -1948173 + (TGG)n Simple_repeat Simple_repeat 1 92 0 2 1733 452 273 34 67 chr5 150589116 150589265 -1947994 - RSINE1 SINE B4 -19 146 3 2 1733 222 279 44 0 chr5 150589641 150589709 -1947550 + B1F SINE Alu 66 136 -13 2 1733 484 270 51 32 chr5 150589774 150589931 -1947328 + B4 SINE B4 7 166 -126 2 1733 422 332 49 63 chr5 150590067 150590614 -1946645 + L1MA9 LINE L1 5483 6023 -289 2 1733 303 219 55 37 chr5 150590797 150590906 -1946353 + URR1B DNA MER1_type 114 224 -1 2 1733 308 178 26 40 chr5 150591000 150591076 -1946183 + B4A SINE B4 1 75 -217 2 1733 263 119 0 23 chr5 150591100 150591143 -1946116 + B4A SINE B4 187 228 -64 2 1733 411 55 0 0 chr5 150591146 150591201 -1946058 + B2_Mm2 SINE B2 2 56 -139 2 1733 603 144 18 9 chr5 150591212 150591324 -1945935 - B2_Mm2 SINE B2 -23 172 60 2 1733 436 248 153 0 chr5 150591324 150591461 -1945798 + B3 SINE B2 2 159 -57 2 1733 387 60 0 0 chr5 150591465 150591515 -1945744 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 1733 344 256 99 15 chr5 150592016 150592147 -1945112 + L1MA9 LINE L1 6169 6310 -2 2 1733 471 18 0 0 chr5 150592455 150592511 -1944748 + (TG)n Simple_repeat Simple_repeat 2 57 0 2 1733 2488 170 116 38 chr5 150592536 150593069 -1944190 - RMER15 LTR ERVL 0 575 1 2 1733 2346 102 29 24 chr5 150593130 150593510 -1943749 - RLTR14 LTR ERV1 0 382 1 2 1733 402 317 24 89 chr5 150593512 150593758 -1943501 + MLT1F2 LTR MaLR 265 494 -66 2 1733 491 241 80 7 chr5 150595171 150595309 -1941950 + MLT1A0 LTR MaLR 218 365 0 2 1733 226 350 56 43 chr5 150595466 150595699 -1941560 - L1MC4 LINE L1 -364 7678 7443 2 1733 201 200 50 0 chr5 150596201 150596241 -1941018 + (CGTG)n Simple_repeat Simple_repeat 1 42 0 2 1733 333 302 64 70 chr5 150596854 150597110 -1940149 - L1MC4 LINE L1 -1113 6882 6614 2 1733 250 30 0 0 chr5 150599120 150599153 -1938106 - U2 snRNA snRNA -152 36 4 2 1733 587 236 0 16 chr5 150600075 150600200 -1937059 + B1F SINE Alu 23 145 -4 2 1734 525 32 0 0 chr5 150602421 150602484 -1934775 + (TC)n Simple_repeat Simple_repeat 1 63 0 2 1734 981 181 0 58 chr5 150603254 150603459 -1933800 - B3A SINE B2 0 198 6 2 1734 314 263 48 63 chr5 150603496 150603622 -1933637 - MIRb SINE MIR -92 176 53 2 1734 246 114 14 28 chr5 150604001 150604073 -1933186 + T-rich Low_complexity Low_complexity 1 71 0 2 1734 2015 179 134 25 chr5 150604618 150605075 -1932184 + RMER4B LTR ERVK 1 505 -80 2 1734 228 35 0 0 chr5 150605075 150605104 -1932155 + (TG)n Simple_repeat Simple_repeat 1 29 0 2 1734 2015 179 134 25 chr5 150605104 150605168 -1932091 + RMER4B LTR ERVK 506 578 -7 2 1734 377 336 141 83 chr5 150605287 150605910 -1931349 + MLT2F LTR ERVL 3 661 -2 2 1734 227 336 46 18 chr5 150606569 150606678 -1930581 - L4 LINE RTE -706 1323 1212 2 1734 25 0 0 0 chr5 150607700 150607725 -1929534 + AT_rich Low_complexity Low_complexity 1 25 0 2 1734 198 103 0 0 chr5 150608802 150608831 -1928428 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 2 1734 23 0 0 0 chr5 150609150 150609173 -1928086 + AT_rich Low_complexity Low_complexity 1 23 0 2 1734 225 0 0 0 chr5 150609656 150609681 -1927578 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1734 423 0 0 0 chr5 150609768 150609815 -1927444 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 1734 254 125 0 0 chr5 150610768 150610808 -1926451 + MIR SINE MIR 213 252 -10 2 1734 233 263 35 0 chr5 150610967 150611024 -1926235 + CT-rich Low_complexity Low_complexity 1 59 0 2 1734 204 259 19 0 chr5 150611037 150611091 -1926168 - MIRb SINE MIR -96 172 118 2 1734 202 188 0 0 chr5 150611489 150611521 -1925738 + polypyrimidine Low_complexity Low_complexity 1 32 0 2 1734 224 211 52 17 chr5 150611988 150612046 -1925213 + L2b LINE L2 3315 3374 -1 2 1734 6041 51 9 21 chr5 150612091 150612919 -1924340 - RLTR13D2 LTR ERVK 0 1023 20 2 1734 231 236 236 0 chr5 150614926 150614998 -1922261 + L2c LINE L2 3298 3386 -1 2 1734 236 234 0 0 chr5 150616225 150616272 -1920987 + L2 LINE L2 2304 2350 -1069 2 1734 311 150 17 0 chr5 150616960 150617020 -1920239 + T-rich Low_complexity Low_complexity 3 63 0 2 1734 244 255 0 0 chr5 150617022 150617069 -1920190 + polypyrimidine Low_complexity Low_complexity 1 47 0 2 1734 317 276 33 20 chr5 150617206 150617322 -1919937 + L1MEg LINE L1 2036 2110 -4132 2 1734 402 274 11 0 chr5 150619016 150619111 -1918148 - MIR SINE MIR -8 254 159 2 1734 247 293 110 26 chr5 150619526 150619680 -1917579 - LTR86C LTR ERVL -39 582 416 2 1734 21 36 0 0 chr5 150621112 150621140 -1916119 + AT_rich Low_complexity Low_complexity 1 28 0 2 1734 182 119 0 45 chr5 150621679 150621723 -1915536 + T-rich Low_complexity Low_complexity 1 42 0 2 1734 210 71 0 0 chr5 150622570 150622598 -1914661 + (A)n Simple_repeat Simple_repeat 1 28 0 2 1734 228 111 0 0 chr5 150623388 150623424 -1913835 + (CG)n Simple_repeat Simple_repeat 1 36 0 2 1734 498 75 0 0 chr5 150623424 150623491 -1913768 + (CA)n Simple_repeat Simple_repeat 1 67 0 2 1734 745 100 52 44 chr5 150626175 150626311 -1910948 + RMER10A LTR ERVL 6 142 -300 2 1734 267 31 0 0 chr5 150627773 150627805 -1909454 + (TCC)n Simple_repeat Simple_repeat 3 34 0 2 1734 638 250 69 39 chr5 150628954 150629158 -1908101 + B3 SINE B2 1 210 -6 2 1734 1122 76 7 0 chr5 150629174 150629319 -1907940 + B1_Mus1 SINE Alu 3 148 0 2 1734 207 0 0 0 chr5 150629333 150629356 -1907903 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2 1734 2548 142 87 19 chr5 150629604 150630086 -1907173 - RLTR28 LTR ERVL -6 518 4 2 1734 306 0 0 0 chr5 150630094 150630128 -1907131 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 1734 243 0 0 0 chr5 150630240 150630267 -1906992 + (A)n Simple_repeat Simple_repeat 1 27 0 2 1734 668 179 171 11 chr5 150630322 150630497 -1906762 + B3 SINE B2 4 206 -10 2 1734 1040 162 0 62 chr5 150630789 150630919 -1906340 - ORR1C2 LTR MaLR 0 384 258 2 1734 405 0 0 0 chr5 150630919 150630964 -1906295 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 1734 1040 162 0 62 chr5 150630964 150631043 -1906216 - ORR1C2 LTR MaLR -127 257 188 2 1734 384 22 0 0 chr5 150631043 150631088 -1906171 + (GA)n Simple_repeat Simple_repeat 2 46 0 2 1734 1717 136 50 20 chr5 150631089 150631389 -1905870 - RLTR28 LTR ERVL -215 309 1 2 1734 187 118 39 0 chr5 150632709 150632752 -1904507 + T-rich Low_complexity Low_complexity 9 53 0 2 1734 1183 48 7 0 chr5 150632752 150632898 -1904361 - B1_Mm SINE Alu 0 147 1 2 1734 392 245 67 19 chr5 150632907 150633011 -1904248 - B4 SINE B4 -72 220 112 2 1734 233 89 0 22 chr5 150633234 150633280 -1903979 + (CAAAA)n Simple_repeat Simple_repeat 4 48 0 2 1734 601 183 164 56 chr5 150633372 150633560 -1903699 + ORR1D1 LTR MaLR 5 211 -156 2 1734 251 182 30 0 chr5 150633582 150633648 -1903611 + CT-rich Low_complexity Low_complexity 6 73 0 2 1734 772 181 139 45 chr5 150633650 150633852 -1903407 + ORR1D1 LTR MaLR 154 374 0 2 1734 393 39 0 0 chr5 150634680 150634731 -1902528 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2 1734 186 184 0 0 chr5 150634938 150634962 -1902297 + T-rich Low_complexity Low_complexity 26 49 0 2 1734 722 226 20 0 chr5 150634962 150635108 -1902151 - B1_Mur1 SINE Alu 0 149 1 2 1734 186 184 0 0 chr5 150635108 150635132 -1902127 + T-rich Low_complexity Low_complexity 2 25 0 2 1734 332 269 9 28 chr5 150635133 150635240 -1902019 - L1M3 LINE L1 -693 5496 5392 2 1734 1790 171 97 33 chr5 150635736 150636128 -1901131 + MTD LTR MaLR 3 419 0 2 1734 3446 28 18 0 chr5 150636630 150637023 -1900236 + MTB LTR MaLR 1 400 0 2 1734 342 0 0 0 chr5 150637121 150637159 -1900100 + (TC)n Simple_repeat Simple_repeat 1 38 0 2 1734 225 0 0 0 chr5 150637159 150637183 -1900076 + (CA)n Simple_repeat Simple_repeat 1 25 0 2 1734 4452 117 90 114 chr5 150637209 150638180 -1899079 + RMER21A LTR ERV1 1 947 0 2 1734 404 306 110 63 chr5 150638398 150638653 -1898606 - L1M3de LINE L1 -5743 910 644 2 1734 364 197 24 24 chr5 150638681 150639023 -1898236 + (TG)n Simple_repeat Simple_repeat 1 342 0 2 1734 198 183 28 14 chr5 150639045 150639117 -1898142 + (TG)n Simple_repeat Simple_repeat 1 73 0 2 1734 2361 122 66 3 chr5 150639395 150639757 -1897502 - ORR1B1 LTR MaLR 0 394 10 2 1734 402 21 0 0 chr5 150639757 150639804 -1897455 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1734 366 23 0 0 chr5 150640497 150640540 -1896719 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1734 304 280 21 90 chr5 150641986 150642015 -1895244 - B2_Mm2 SINE B2 -60 135 114 3 1734 387 0 0 0 chr5 150642015 150642058 -1895201 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1734 566 202 53 0 chr5 150642059 150642173 -1895086 - RSINE1 SINE B4 -44 121 2 3 1734 1687 26 0 0 chr5 150642235 150642427 -1894832 - B2_Mm1a SINE B2 0 193 2 3 1734 277 321 32 46 chr5 150642754 150642907 -1894352 - LTR16D LTR ERVL -206 445 304 3 1734 790 286 85 37 chr5 150644256 150644528 -1892731 + MER2 DNA MER2_type 16 300 -45 3 1734 989 172 6 0 chr5 150644787 150644950 -1892309 + B3A SINE B2 2 165 -33 3 1734 198 143 0 0 chr5 150644970 150645005 -1892254 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1734 1596 237 77 5 chr5 150645897 150646275 -1890984 - MTD LTR MaLR -14 405 1 3 1734 186 118 0 0 chr5 150646349 150646383 -1890876 + (A)n Simple_repeat Simple_repeat 1 34 0 3 1734 287 308 186 31 chr5 150646462 150646639 -1890620 + RMER20B LTR ERVK 197 419 -208 3 1734 4744 225 38 37 chr5 150646645 150647423 -1889836 - MERVK26-int LTR ERVK -5658 1261 475 3 1734 258 105 0 0 chr5 150647423 150647461 -1889798 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 3 1734 4744 225 38 37 chr5 150647461 150647887 -1889372 - MERVK26-int LTR ERVK -6445 474 57 3 1734 305 269 107 150 chr5 150648200 150648480 -1888779 - RLTR26 LTR ERVK -207 435 168 3 1734 184 30 29 29 chr5 150648562 150648596 -1888663 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 3 1734 641 255 56 6 chr5 150649058 150649220 -1888039 - MLT2C2 LTR ERVL -58 406 237 3 1734 438 273 34 101 chr5 150650120 150650299 -1886960 - MLT1B LTR MaLR -220 170 4 3 1734 1348 193 161 0 chr5 150650519 150650830 -1886429 + ORR1D1 LTR MaLR 1 361 -13 3 1734 243 0 0 0 chr5 150652519 150652546 -1884713 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1734 2445 69 3 0 chr5 150652563 150652881 -1884378 - ORR1A2 LTR MaLR -8 319 1 3 1734 890 271 29 5 chr5 150652881 150653082 -1884177 - B4 SINE B4 -84 208 3 3 1734 333 0 0 0 chr5 150653568 150653605 -1883654 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 1734 417 20 0 0 chr5 150654384 150654434 -1882825 + (TC)n Simple_repeat Simple_repeat 2 51 0 3 1734 366 23 0 0 chr5 150654434 150654476 -1882783 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 1734 617 231 28 63 chr5 150654511 150654654 -1882605 - B1F SINE Alu -6 143 6 3 1734 354 222 0 0 chr5 150655228 150655318 -1881941 + GA-rich Low_complexity Low_complexity 1 90 0 3 1734 269 335 95 45 chr5 150655565 150655787 -1881472 + ORR1E LTR MaLR 32 264 -95 3 1734 988 296 141 26 chr5 150655966 150656546 -1880713 - L2 LINE L2 -800 2619 1973 3 1734 1209 250 113 12 chr5 150656691 150657027 -1880232 + ORR1D2 LTR MaLR 1 370 0 3 1734 699 236 154 0 chr5 150657166 150657348 -1879911 - ID_B1 SINE B4 -14 210 1 3 1734 24 0 0 0 chr5 150657527 150657551 -1879708 + AT_rich Low_complexity Low_complexity 1 24 0 3 1734 973 181 96 0 chr5 150657556 150657744 -1879515 - B3 SINE B2 -10 206 1 3 1734 210 402 29 58 chr5 150657852 150658026 -1879233 - L2b LINE L2 0 3375 3207 3 1734 347 364 22 43 chr5 150658524 150658708 -1878551 - MIR SINE MIR -2 260 81 3 1734 2232 171 18 3 chr5 150658747 150659135 -1878124 + ORR1B1 LTR MaLR 1 394 0 3 1734 496 252 41 20 chr5 150659253 150659399 -1877860 - B1F SINE Alu 0 149 1 3 1734 675 176 0 0 chr5 150659483 150659642 -1877617 + (TG)n Simple_repeat Simple_repeat 2 160 0 3 1734 204 286 0 0 chr5 150659783 150659832 -1877427 + CT-rich Low_complexity Low_complexity 2 50 0 3 1734 571 246 116 19 chr5 150660227 150660434 -1876825 - L1MA7 LINE L1 -4 6287 6061 3 1734 498 169 79 0 chr5 150660446 150660535 -1876724 - BC1_Mm scRNA scRNA -56 96 1 3 1734 738 290 67 69 chr5 150660540 150660800 -1876459 - L1MA7 LINE L1 -241 6050 5807 3 1734 2728 160 81 0 chr5 150660800 150661249 -1876010 + MT2A LTR ERVL 1 460 -73 3 1734 414 0 0 0 chr5 150661249 150661295 -1875964 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 1734 2728 160 81 0 chr5 150661295 150661338 -1875921 + MT2A LTR ERVL 461 531 -2 3 1734 738 291 68 68 chr5 150661338 150661505 -1875754 - L1MA7 LINE L1 -494 5806 5624 3 1734 226 349 68 78 chr5 150661543 150661748 -1875511 - ORR1C2 LTR MaLR -90 294 92 3 1734 1122 52 0 0 chr5 150662032 150662167 -1875092 - B1_Mus1 SINE Alu -13 135 1 3 1734 289 278 34 0 chr5 150662223 150662310 -1874949 - L1MA7 LINE L1 -689 5467 5378 3 1734 1222 257 76 31 chr5 150662312 150662666 -1874593 - ORR1D2 LTR MaLR 0 370 1 3 1734 728 280 186 9 chr5 150662693 150663151 -1874108 - L1MA7 LINE L1 -789 5351 4813 3 1734 231 326 0 32 chr5 150663466 150663561 -1873698 - MLT1A1 LTR MaLR -25 383 292 3 1734 384 298 55 20 chr5 150663821 150664044 -1873215 + MLT1D LTR MaLR 75 382 -123 3 1734 405 0 0 0 chr5 150665368 150665413 -1871846 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 1734 183 233 0 118 chr5 150665660 150665728 -1871531 + L4 LINE RTE 1211 1270 -759 3 1734 219 88 0 0 chr5 150666924 150666958 -1870301 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 1734 1751 139 117 5 chr5 150667212 150667581 -1869678 + RMER17C LTR ERVK 1 410 0 3 1734 295 267 0 20 chr5 150667743 150667821 -1869438 - RSINE1 SINE B4 -216 76 2 3 1734 252 208 0 182 chr5 150668096 150668184 -1869075 + MT2B LTR ERVL 167 238 -363 3 1734 723 139 8 37 chr5 150668105 150668239 -1869020 + B1_Mur4 SINE Alu 7 136 -14 3 1734 874 198 96 0 chr5 150668980 150669126 -1868133 + B3 SINE B2 1 149 -67 3 1734 369 0 0 0 chr5 150669126 150669167 -1868092 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1734 874 198 96 0 chr5 150669167 150669217 -1868042 + B3 SINE B2 150 215 -1 3 1734 454 366 0 0 chr5 150670008 150670161 -1867098 + (CA)n Simple_repeat Simple_repeat 2 154 0 3 1734 1189 36 0 0 chr5 150670243 150670382 -1866877 + B1_Mus1 SINE Alu 1 139 -9 3 1734 198 0 0 0 chr5 150670382 150670404 -1866855 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3 1734 231 36 0 0 chr5 150671282 150671310 -1865949 + (A)n Simple_repeat Simple_repeat 1 28 0 3 1734 313 157 0 0 chr5 150672691 150672742 -1864517 + MIR3 SINE MIR 110 160 -48 3 1734 519 170 0 0 chr5 150672946 150673046 -1864213 + (CA)n Simple_repeat Simple_repeat 2 101 0 3 1734 785 125 0 7 chr5 150673099 150673252 -1864007 + (CA)n Simple_repeat Simple_repeat 2 153 0 3 1734 924 215 156 30 chr5 150674211 150674548 -1862711 + RLTR11A LTR ERVK 10 386 -142 3 1734 324 0 0 0 chr5 150674548 150674584 -1862675 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 1734 924 215 156 30 chr5 150674584 150674611 -1862648 + RLTR11A LTR ERVK 387 419 -109 3 1734 1975 136 30 13 chr5 150674637 150675032 -1862227 + RMER17C LTR ERVK 1 402 -8 3 1734 251 224 65 76 chr5 150675025 150675117 -1862142 + RLTR11A LTR ERVK 432 522 -6 3 1734 684 181 60 0 chr5 150675296 150675429 -1861830 + B1_Mur2 SINE Alu 9 149 0 3 1734 197 33 33 0 chr5 150675431 150675461 -1861798 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3 1734 1591 133 47 67 chr5 150675744 150675878 -1861381 - RMER17C LTR ERVK 0 410 279 3 1734 426 20 0 0 chr5 150675878 150675929 -1861330 + (TATAG)n Simple_repeat Simple_repeat 1 51 0 3 1734 1591 136 38 61 chr5 150675929 150676284 -1860975 - RMER17C LTR ERVK -520 438 1 3 1734 1331 88 0 72 chr5 150677024 150677233 -1860026 + B2_Mm2 SINE B2 2 195 0 3 1734 649 236 56 9 chr5 150677319 150677522 -1859737 + ORR1C2 LTR MaLR 162 384 0 3 1734 3186 63 2 5 chr5 150677581 150677981 -1859278 + MTB LTR MaLR 2 400 0 3 1734 964 206 43 66 chr5 150678189 150678538 -1858721 + RLTR15 LTR ERVK 3 343 -16 3 1734 489 181 0 0 chr5 150678842 150678936 -1858323 + CT-rich Low_complexity Low_complexity 2 95 0 3 1734 267 279 163 0 chr5 150679217 150679303 -1857956 + PB1D10 SINE Alu 3 102 -15 3 1734 1118 295 97 104 chr5 150679303 150680222 -1857037 + L1M2 LINE L1 4582 5541 -339 3 1734 1172 245 46 79 chr5 150680228 150680492 -1856767 - ORR1D2 LTR MaLR -14 356 87 3 1734 1324 151 23 0 chr5 150680492 150680711 -1856548 + URR1B DNA MER1_type 1 224 -1 3 1734 1172 245 46 79 chr5 150680711 150680814 -1856445 - ORR1D2 LTR MaLR -284 86 1 3 1734 203 191 24 0 chr5 150681020 150681062 -1856197 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 1734 2133 155 171 11 chr5 150681092 150681756 -1855503 - RMER13A LTR ERVK -89 771 1 3 1734 342 0 0 0 chr5 150682214 150682252 -1855007 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 1734 228 258 54 33 chr5 150682432 150682524 -1854735 - MIRc SINE MIR -52 216 123 3 1734 466 236 109 99 chr5 150682917 150683138 -1854121 + MTC LTR MaLR 6 228 -193 3 1734 627 176 0 0 chr5 150683122 150683230 -1854029 + B1_Mus1 SINE Alu 34 141 -7 3 1734 207 0 0 0 chr5 150683230 150683253 -1854006 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 1734 336 64 0 0 chr5 150683253 150683300 -1853959 + (GA)n Simple_repeat Simple_repeat 1 47 0 3 1734 383 0 21 0 chr5 150683329 150683376 -1853883 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 1734 317 243 14 0 chr5 150685284 150685354 -1851905 + ID4 SINE ID 2 72 -11 3 1734 369 0 0 0 chr5 150685357 150685398 -1851861 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 1734 588 119 0 0 chr5 150685398 150685507 -1851752 + (GA)n Simple_repeat Simple_repeat 1 109 0 3 1734 509 0 16 0 chr5 150686112 150686173 -1851086 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 3 1734 593 144 229 81 chr5 150686614 150686758 -1850501 - B3 SINE B2 -41 175 1 3 1734 492 209 22 0 chr5 150686796 150686887 -1850372 - PB1D7 SINE Alu -11 109 17 3 1734 24 0 0 0 chr5 150687504 150687528 -1849731 + AT_rich Low_complexity Low_complexity 1 24 0 3 1734 261 321 36 45 chr5 150688367 150688478 -1848781 - B3 SINE B2 -34 182 73 3 1734 222 229 0 0 chr5 150688473 150688521 -1848738 - PB1D10 SINE Alu -27 90 43 3 1734 435 83 0 0 chr5 150688860 150688920 -1848339 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 3 1734 961 241 183 9 chr5 150689210 150689533 -1847726 - MTEb LTR MaLR 0 379 1 3 1734 198 103 0 0 chr5 150689750 150689779 -1847480 + (A)n Simple_repeat Simple_repeat 1 29 0 4 1734 1454 198 76 48 chr5 150691070 150691467 -1845792 + MTD LTR MaLR 12 419 0 4 1734 22 0 0 0 chr5 150691533 150691555 -1845704 + AT_rich Low_complexity Low_complexity 1 22 0 4 1734 22 0 0 0 chr5 150691701 150691723 -1845536 + AT_rich Low_complexity Low_complexity 1 22 0 4 1734 1035 184 17 78 chr5 150691743 150691789 -1845470 - B3 SINE B2 0 216 187 4 1734 2014 189 100 53 chr5 150691789 150692218 -1845041 + RMER15 LTR ERVL 1 452 -123 4 1734 468 0 44 15 chr5 150692218 150692286 -1844973 + (CAAA)n Simple_repeat Simple_repeat 3 72 0 4 1734 2014 189 100 53 chr5 150692286 150692405 -1844854 + RMER15 LTR ERVL 453 574 -1 4 1734 1035 184 17 78 chr5 150692405 150692588 -1844671 - B3 SINE B2 -30 186 1 4 1734 279 0 0 0 chr5 150693247 150693278 -1843981 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 4 1734 366 178 6 6 chr5 150693620 150693702 -1843557 + B1F1 SINE Alu 59 140 -9 4 1734 387 310 192 18 chr5 150694427 150694808 -1842451 + L1ME3 LINE L1 5694 6140 -22 4 1734 2280 172 57 57 chr5 150695241 150695278 -1841981 + RLTR12A LTR ERVK 12 48 -520 4 1734 1536 43 16 11 chr5 150695278 150695465 -1841794 - B2_Mm2 SINE B2 -7 188 1 4 1734 2280 172 57 57 chr5 150695465 150695975 -1841284 + RLTR12A LTR ERVK 49 559 -9 4 1734 856 244 49 0 chr5 150696236 150696441 -1840818 + B3 SINE B2 2 216 0 4 1734 457 281 95 50 chr5 150696638 150696900 -1840359 + Kanga11a DNA Tc2 173 446 -524 4 1734 909 141 0 22 chr5 150697330 150697511 -1839748 + CT-rich Low_complexity Low_complexity 4 180 0 4 1734 40 59 0 0 chr5 150697927 150697995 -1839264 + AT_rich Low_complexity Low_complexity 1 68 0 4 1734 306 231 90 0 chr5 150698102 150698180 -1839079 - B4 SINE B4 -207 85 1 4 1734 323 301 19 155 chr5 150698682 150698843 -1838416 - RSINE1 SINE B4 -25 140 2 4 1734 342 0 0 0 chr5 150699283 150699321 -1837938 + (CA)n Simple_repeat Simple_repeat 2 39 0 4 1734 259 221 169 0 chr5 150699667 150699744 -1837515 - MLT1J1 LTR MaLR -107 337 248 4 1734 1360 294 86 18 chr5 150699912 150700365 -1836894 + Lx8 LINE L1 6227 6710 -763 4 1734 3326 176 103 89 chr5 150700379 150701315 -1835944 + RMER19B LTR ERVK 1 896 -6 4 1734 825 297 13 0 chr5 150701322 150701554 -1835705 + Lx8 LINE L1 6725 6959 -514 4 1734 2115 105 62 17 chr5 150701554 150701625 -1835634 + ORR1B1 LTR MaLR 1 67 -327 4 1734 2149 94 26 62 chr5 150701625 150701966 -1835293 - ORR1A4 LTR MaLR 0 329 1 4 1734 2115 112 60 25 chr5 150701966 150702274 -1834985 + ORR1B1 LTR MaLR 68 377 -2 4 1734 836 242 69 20 chr5 150703476 150703678 -1833581 + B3 SINE B2 1 212 -4 4 1734 1554 198 83 29 chr5 150703835 150704183 -1833076 + ORR1D2 LTR MaLR 4 370 0 4 1734 3173 141 21 23 chr5 150704746 150704989 -1832270 - RLTR20D LTR ERVK 0 568 328 4 1734 3369 33 8 5 chr5 150704989 150705388 -1831871 + MTB LTR MaLR 1 400 0 4 1734 3173 141 21 23 chr5 150705388 150705709 -1831550 - RLTR20D LTR ERVK -241 327 5 4 1734 470 217 167 0 chr5 150706770 150706908 -1830351 + ORR1D1 LTR MaLR 4 164 -210 4 1734 414 0 0 0 chr5 150706911 150706957 -1830302 + (TC)n Simple_repeat Simple_repeat 2 47 0 4 1734 375 247 13 0 chr5 150707054 150707131 -1830128 + ID4_ SINE ID 4 81 -2 4 1734 219 247 225 0 chr5 150708289 150708378 -1828881 + PB1D10 SINE Alu 2 110 -7 4 1734 623 162 21 25 chr5 150708419 150708603 -1828656 - ORR1B2 LTR MaLR -178 168 7 4 1734 376 247 13 0 chr5 150708644 150708721 -1828538 + ID4_ SINE ID 4 81 -2 4 1734 441 395 73 14 chr5 150708983 150709327 -1827932 + MER115 DNA Tip100 153 516 -177 4 1734 247 200 11 105 chr5 150709392 150709487 -1827772 + MER115 DNA Tip100 548 633 -60 4 1734 242 160 0 20 chr5 150713475 150713526 -1823733 + CT-rich Low_complexity Low_complexity 1 50 0 4 1734 751 180 69 32 chr5 150713948 150714052 -1823207 + B3 SINE B2 21 123 -93 4 1734 1461 150 6 192 chr5 150714052 150714366 -1822893 - RMER17C LTR ERVK 0 410 183 4 1734 1133 103 11 0 chr5 150714366 150714540 -1822719 + (AGGGGG)n Simple_repeat Simple_repeat 4 179 0 4 1734 1461 150 6 192 chr5 150714540 150714729 -1822530 - RMER17C LTR ERVK -228 182 1 4 1734 751 180 69 32 chr5 150714729 150714813 -1822446 + B3 SINE B2 124 216 0 4 1734 561 80 30 10 chr5 150714823 150714924 -1822335 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 4 1734 200 283 141 0 chr5 150714976 150715075 -1822184 + MIRb SINE MIR 105 217 -51 4 1734 239 241 0 17 chr5 150715794 150715853 -1821406 - PB1D10 SINE Alu -19 98 41 4 1734 207 100 0 0 chr5 150715917 150715947 -1821312 + (TCTG)n Simple_repeat Simple_repeat 3 32 0 4 1734 263 119 48 0 chr5 150715947 150715989 -1821270 + (TCCA)n Simple_repeat Simple_repeat 3 46 0 4 1734 1264 85 28 2 chr5 150715989 150716632 -1820627 + (TCTA)n Simple_repeat Simple_repeat 1 660 0 4 1734 227 242 42 52 chr5 150717482 150717578 -1819681 - B1_Mur4 SINE Alu -51 99 3 4 1734 807 345 60 21 chr5 150718387 150718805 -1818454 + MLT1F LTR MaLR 97 530 -18 4 1734 215 363 52 52 chr5 150718994 150719090 -1818169 - PB1 SINE Alu -26 101 6 4 1734 22 56 0 0 chr5 150719101 150719137 -1818122 + AT_rich Low_complexity Low_complexity 1 36 0 4 1734 636 164 47 172 chr5 150719139 150719308 -1817951 + B1_Mur1 SINE Alu 2 149 0 4 1734 1609 25 15 0 chr5 150719589 150719787 -1817472 - L1Md_F3 LINE L1 -14 6570 6370 4 1734 526 228 80 14 chr5 150720119 150720257 -1817002 - B3 SINE B2 -67 149 3 4 1734 496 292 57 14 chr5 150720638 150720850 -1816409 - Tigger7 DNA MER2_type -11 2480 2260 4 1734 180 186 0 34 chr5 150720897 150720954 -1816305 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 4 1734 196 21 39 77 chr5 150720954 150721006 -1816253 + (CTAAT)n Simple_repeat Simple_repeat 4 53 0 4 1734 180 186 0 34 chr5 150721006 150721037 -1816222 + (TCTA)n Simple_repeat Simple_repeat 2 31 0 4 1734 831 338 36 33 chr5 150721159 150721465 -1815794 - Tigger7 DNA MER2_type -2184 307 1 4 1734 773 134 23 0 chr5 150722120 150722292 -1814967 + CT-rich Low_complexity Low_complexity 2 177 0 4 1734 1231 109 11 0 chr5 150722493 150722668 -1814591 + B2_Mm2 SINE B2 2 178 -17 4 1734 3457 45 35 9 chr5 150724390 150724815 -1812444 + RLTR10C LTR ERVK 1 436 0 4 1734 1743 218 68 37 chr5 150725043 150725525 -1811734 + RLTR11A2 LTR ERVK 6 502 -25 4 1734 1006 199 19 24 chr5 150726878 150727084 -1810175 + B3 SINE B2 1 205 -11 4 1734 278 237 62 0 chr5 150727604 150727701 -1809558 + (TG)n Simple_repeat Simple_repeat 2 104 0 4 1734 279 149 27 13 chr5 150727712 150727787 -1809472 + (TG)n Simple_repeat Simple_repeat 2 77 0 4 1734 1512 200 68 26 chr5 150727837 150728388 -1808871 - RLTR24 LTR ERV1 0 529 16 4 1734 2235 148 52 17 chr5 150728530 150728935 -1808324 + MTD LTR MaLR 1 419 0 4 1734 321 26 0 0 chr5 150729406 150729444 -1807815 + (TA)n Simple_repeat Simple_repeat 2 39 0 4 1734 361 115 0 62 chr5 150729769 150729834 -1807425 - B1_Mus2 SINE Alu 0 147 87 4 1734 894 224 18 0 chr5 150729891 150730061 -1807198 - B3 SINE B2 -37 179 7 4 1734 431 130 13 0 chr5 150730196 150730273 -1806986 + (TCC)n Simple_repeat Simple_repeat 2 79 0 4 1734 463 290 51 1 chr5 150730294 150730459 -1806800 - MLT1B LTR MaLR -17 391 225 4 1734 535 273 8 0 chr5 150730459 150730587 -1806672 + MTE2b LTR MaLR 3 131 -248 4 1734 283 216 51 63 chr5 150730590 150730669 -1806590 + MTE2b LTR MaLR 293 370 -9 4 1734 269 304 34 17 chr5 150730679 150730796 -1806463 - MLT1B LTR MaLR -175 215 97 4 1734 701 171 269 6 chr5 150730802 150730973 -1806286 + B3 SINE B2 1 216 0 4 1734 74 62 0 0 chr5 150730973 150731103 -1806156 + AT_rich Low_complexity Low_complexity 1 130 0 4 1734 377 277 9 26 chr5 150731119 150731234 -1806025 - MLT1B LTR MaLR -277 113 1 4 1734 299 300 10 10 chr5 150732171 150732272 -1804987 + CT-rich Low_complexity Low_complexity 2 102 0 4 1734 261 0 0 0 chr5 150732283 150732312 -1804947 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 4 1734 987 93 0 0 chr5 150732627 150732767 -1804492 + (GA)n Simple_repeat Simple_repeat 1 140 0 4 1735 361 81 32 0 chr5 150733401 150733463 -1803796 + (TG)n Simple_repeat Simple_repeat 2 65 0 4 1735 494 335 39 42 chr5 150733613 150733872 -1803387 - MER2 DNA MER2_type -2 343 86 4 1735 318 106 0 0 chr5 150734020 150734067 -1803192 + (CA)n Simple_repeat Simple_repeat 2 48 0 4 1735 705 148 70 19 chr5 150734882 150735040 -1802219 - MTD LTR MaLR 0 419 254 4 1735 799 276 70 27 chr5 150736899 150737197 -1800062 - L1MC2 LINE L1 -1 6343 6033 4 1735 233 336 102 50 chr5 150737314 150737559 -1799700 - L1M2c LINE L1 -4196 2653 2404 4 1735 558 43 0 0 chr5 150737559 150737628 -1799631 + (TG)n Simple_repeat Simple_repeat 1 69 0 4 1735 265 346 80 53 chr5 150737628 150737951 -1799308 - L1M2c LINE L1 -4446 2403 2068 4 1735 783 271 24 108 chr5 150738160 150738569 -1798690 - MTEa LTR MaLR -4 375 1 4 1735 1746 210 94 43 chr5 150738693 150739192 -1798067 + RMER19C LTR ERVK 67 609 -2 4 1735 254 329 18 18 chr5 150739192 150739359 -1797900 - L1M5 LINE L1 -320 5844 5678 4 1735 1085 208 10 0 chr5 150739385 150739587 -1797672 + B3 SINE B2 3 206 -10 4 1735 242 189 19 19 chr5 150739682 150739736 -1797523 + L1M5 LINE L1 2960 3013 -3133 4 1735 21 36 0 0 chr5 150739855 150739883 -1797376 + AT_rich Low_complexity Low_complexity 1 28 0 4 1735 234 0 0 0 chr5 150740012 150740038 -1797221 + (AGGGGG)n Simple_repeat Simple_repeat 2 27 0 4 1735 818 272 16 4 chr5 150740266 150740510 -1796749 + ORR1D2 LTR MaLR 122 368 -2 4 1735 216 0 0 0 chr5 150740878 150740902 -1796357 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 4 1735 1161 0 53 0 chr5 150741325 150741494 -1795765 + (TTC)n Simple_repeat Simple_repeat 3 180 0 4 1735 670 42 42 0 chr5 150741509 150741605 -1795654 + (TTCTCC)n Simple_repeat Simple_repeat 2 101 0 4 1735 1180 86 11 0 chr5 150741605 150741780 -1795479 + (TTC)n Simple_repeat Simple_repeat 2 178 0 4 1735 1189 57 0 0 chr5 150741782 150741923 -1795336 - B1_Mus1 SINE Alu -7 141 1 4 1735 783 102 48 19 chr5 150742425 150742697 -1794562 + (TCTA)n Simple_repeat Simple_repeat 1 280 0 4 1735 1349 328 83 36 chr5 150742712 150743865 -1793394 - L2a LINE L2 -196 3230 2026 4 1735 871 259 70 103 chr5 150744248 150744618 -1792641 + MTE2a LTR MaLR 19 376 -3 4 1735 435 208 128 3 chr5 150745021 150745173 -1792086 - RLTR11A LTR ERVK -337 190 1 4 1735 548 166 31 19 chr5 150745219 150745379 -1791880 + CT-rich Low_complexity Low_complexity 4 165 0 4 1735 802 312 71 83 chr5 150745993 150746259 -1791000 + L1M4 LINE L1 282 546 -5996 5 1735 730 266 21 10 chr5 150746259 150746453 -1790806 - B3A SINE B2 -1 197 2 5 1735 802 312 71 83 chr5 150746453 150746690 -1790569 + L1M4 LINE L1 547 779 -5763 5 1735 441 0 0 0 chr5 150747132 150747181 -1790078 + (CA)n Simple_repeat Simple_repeat 1 49 0 5 1735 537 302 76 15 chr5 150747181 150747443 -1789816 + L1M4 LINE L1 1073 1350 -5192 5 1735 800 318 111 25 chr5 150747576 150747973 -1789286 - MLT2B2 LTR ERVL -82 433 3 5 1735 289 309 37 9 chr5 150749916 150750024 -1787235 - ERVL-B4-int LTR ERVL -2263 3451 3341 5 1735 738 301 96 15 chr5 150752126 150752386 -1784873 - B4 SINE B4 -4 288 8 5 1735 224 260 62 0 chr5 150753702 150753798 -1783461 + (CCCA)n Simple_repeat Simple_repeat 1 102 0 5 1735 456 217 150 78 chr5 150755012 150755192 -1782067 - B3A SINE B2 -5 193 1 5 1735 439 298 135 0 chr5 150755385 150755526 -1781733 + B3A SINE B2 1 160 -38 5 1735 333 62 0 0 chr5 150755548 150755596 -1781663 + (CA)n Simple_repeat Simple_repeat 2 49 0 5 1735 905 197 0 0 chr5 150755645 150755787 -1781472 + B1_Mur2 SINE Alu 1 142 -7 5 1735 552 287 68 54 chr5 150755834 150756153 -1781106 - MLT1B LTR MaLR -8 459 79 5 1735 239 268 0 101 chr5 150756439 150756518 -1780741 - ID2 SINE ID -11 72 2 5 1735 989 229 19 5 chr5 150756786 150756992 -1780267 - B3 SINE B2 -6 210 2 5 1735 288 351 70 24 chr5 150756993 150757206 -1780053 + MER82 DNA MER2_type 241 463 -190 5 1735 497 285 77 26 chr5 150757247 150757402 -1779857 + Lx8 LINE L1 6828 6990 -483 5 1735 1030 274 6 38 chr5 150757400 150757769 -1779490 + Lx8 LINE L1 5533 5920 -1553 5 1735 22 0 0 0 chr5 150758125 150758147 -1779112 + AT_rich Low_complexity Low_complexity 1 22 0 5 1735 254 269 15 0 chr5 150758214 150758327 -1778932 + (TATATG)n Simple_repeat Simple_repeat 1 114 0 5 1735 520 318 103 26 chr5 150761272 150761650 -1775609 - MER57D LTR ERV1 0 411 5 5 1735 393 117 0 0 chr5 150761747 150761807 -1775452 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 5 1735 896 224 15 19 chr5 150761807 150762019 -1775240 - B3A SINE B2 -1 197 8 5 1735 529 146 15 0 chr5 150762693 150762830 -1774429 + CT-rich Low_complexity Low_complexity 2 140 0 5 1735 906 60 54 0 chr5 150762831 150762999 -1774260 + (TC)n Simple_repeat Simple_repeat 2 178 0 5 1735 300 284 52 0 chr5 150763025 150763141 -1774118 + Lx9 LINE L1 7361 7482 -162 5 1735 238 332 54 45 chr5 150764110 150764311 -1772948 - MLT2B1 LTR ERVL -207 347 151 5 1735 266 200 17 0 chr5 150764351 150764411 -1772848 + B3 SINE B2 1 61 -155 5 1735 292 187 63 25 chr5 150764468 150764555 -1772704 + ORR1D2 LTR MaLR 159 250 -120 5 1735 755 171 233 6 chr5 150764561 150764737 -1772522 - B3 SINE B2 0 216 1 5 1735 1819 168 42 20 chr5 150765182 150765583 -1771676 + RMER17C LTR ERVK 1 410 0 5 1735 643 244 88 42 chr5 150766063 150766163 -1771096 + RLTR15 LTR ERVK 1 111 -248 5 1735 306 0 0 0 chr5 150766163 150766197 -1771062 + (GA)n Simple_repeat Simple_repeat 2 35 0 5 1735 643 244 88 42 chr5 150766197 150766404 -1770855 + RLTR15 LTR ERVK 112 322 -37 5 1735 279 93 0 0 chr5 150766589 150766632 -1770627 + (TTA)n Simple_repeat Simple_repeat 3 45 0 5 1735 452 278 7 67 chr5 150766650 150766685 -1770574 - RSINE1 SINE B4 -9 156 123 5 1735 3215 56 18 0 chr5 150766685 150767078 -1770181 - MTB LTR MaLR 0 400 1 5 1735 452 278 7 67 chr5 150767078 150767177 -1770082 - RSINE1 SINE B4 -43 122 30 5 1735 443 214 19 10 chr5 150767835 150767939 -1769320 + B3A SINE B2 2 106 -92 5 1735 1455 79 5 5 chr5 150768176 150768367 -1768892 + B2_Mm2 SINE B2 1 191 -4 5 1735 574 280 39 84 chr5 150768622 150768825 -1768434 - B3A SINE B2 -3 195 2 5 1735 294 303 112 16 chr5 150768853 150769041 -1768218 - L1MC LINE L1 -1464 4682 4477 5 1735 1465 176 94 31 chr5 150769145 150769497 -1767762 + ORR1D1 LTR MaLR 1 374 0 5 1735 938 280 131 3 chr5 150769690 150770063 -1767196 + Lx8 LINE L1 6872 7292 -181 5 1735 360 0 0 0 chr5 150770209 150770249 -1767010 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1735 464 298 50 58 chr5 150770619 150770758 -1766501 - RSINE1 SINE B4 -25 140 3 5 1735 366 224 41 0 chr5 150770762 150770860 -1766399 - RMER15 LTR ERVL -112 463 362 5 1735 367 320 90 0 chr5 150771040 150771140 -1766119 - RMER15-int LTR ERVL -3 4996 4888 5 1735 992 294 44 19 chr5 150771194 150771513 -1765746 - RMER15-int LTR ERVL -351 4648 4322 5 1735 381 352 49 12 chr5 150772280 150772444 -1764815 + L1M4b LINE L1 244 413 -6921 5 1735 1601 241 3 40 chr5 150772839 150773219 -1764040 + ORR1D2 LTR MaLR 1 366 -4 5 1735 344 298 157 51 chr5 150773281 150773497 -1763762 + MTC LTR MaLR 137 375 -46 5 1735 967 259 57 55 chr5 150773530 150773982 -1763277 - L1M3 LINE L1 -560 5623 5174 5 1735 213 39 0 0 chr5 150773982 150774008 -1763251 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 5 1735 358 259 58 83 chr5 150774008 150774083 -1763176 - L1M3 LINE L1 -973 5173 5092 5 1735 419 262 97 28 chr5 150774184 150774400 -1762859 - L1MA8 LINE L1 -58 6233 6003 5 1735 880 318 55 42 chr5 150774417 150775176 -1762083 - L1M3 LINE L1 -1083 5057 4289 5 1735 817 249 62 0 chr5 150775205 150775398 -1761861 - B3 SINE B2 -10 206 2 5 1735 317 202 38 12 chr5 150778324 150778404 -1758855 + MER89 LTR ERV1 1 82 -477 5 1735 669 252 59 2 chr5 150778557 150778738 -1758521 - B3 SINE B2 -3 195 4 5 1735 3754 72 87 19 chr5 150778897 150779425 -1757834 + LTRIS2 LTR ERV1 1 564 0 5 1735 257 255 29 29 chr5 150779440 150779547 -1757712 + GA-rich Low_complexity Low_complexity 1 107 0 5 1735 226 350 10 98 chr5 150779894 150780097 -1757162 - MLT1N2 LTR MaLR -280 282 98 5 1735 240 0 0 70 chr5 150780357 150780400 -1756859 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 5 1735 407 244 78 0 chr5 150780403 150780518 -1756741 - B3 SINE B2 -24 192 69 5 1735 1668 151 148 0 chr5 150780521 150780852 -1756407 + ORR1B1 LTR MaLR 7 386 -8 5 1735 245 246 16 16 chr5 150780859 150780921 -1756338 - B3A SINE B2 -132 66 5 5 1735 379 289 177 19 chr5 150782139 150782410 -1754849 - L2a LINE L2 -175 3251 2938 5 1735 330 231 32 21 chr5 150782425 150782518 -1754741 + B1F SINE Alu 22 115 -34 5 1735 866 244 60 60 chr5 150782619 150782955 -1754304 + ERVL-B4-int LTR ERVL 5155 5490 -224 5 1735 535 288 214 55 chr5 150783164 150783528 -1753731 + MLT2B1 LTR ERVL 11 432 -88 5 1735 755 171 12 25 chr5 150783560 150783885 -1753374 + (CATA)n Simple_repeat Simple_repeat 1 321 0 5 1735 545 64 0 13 chr5 150785526 150785605 -1751654 + (GGGA)n Simple_repeat Simple_repeat 4 81 0 5 1735 1046 190 9 9 chr5 150785679 150785892 -1751367 - B3 SINE B2 -3 213 1 5 1735 540 45 0 0 chr5 150786047 150786114 -1751145 + (TG)n Simple_repeat Simple_repeat 1 67 0 5 1735 1054 249 132 5 chr5 150787070 150787441 -1749818 + MTD LTR MaLR 1 418 -1 5 1735 911 120 0 34 chr5 150788201 150788214 -1749045 - B1_Mus2 SINE Alu 0 147 136 5 1735 522 0 0 0 chr5 150788214 150788272 -1748987 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 5 1735 911 120 0 34 chr5 150788272 150788405 -1748854 - B1_Mus2 SINE Alu -12 135 6 5 1735 186 239 87 0 chr5 150789386 150789432 -1747827 + MIR3 SINE MIR 128 177 -31 5 1735 205 278 156 39 chr5 150790485 150790668 -1746591 + MIR SINE MIR 36 225 -37 5 1735 437 293 84 38 chr5 150790908 150791121 -1746138 + B4A SINE B4 57 279 -13 5 1735 438 184 11 0 chr5 150791383 150791470 -1745789 + 7SK RNA RNA 13 100 -231 5 1735 675 37 0 0 chr5 150791470 150791552 -1745707 + (CA)n Simple_repeat Simple_repeat 2 83 0 5 1735 363 211 0 0 chr5 150791559 150791630 -1745629 + 7SK RNA RNA 167 237 -94 5 1735 21 36 0 0 chr5 150792161 150792189 -1745070 + GC_rich Low_complexity Low_complexity 1 28 0 5 1735 597 217 0 0 chr5 150792329 150792504 -1744755 + CT-rich Low_complexity Low_complexity 1 175 0 5 1735 666 286 37 25 chr5 150792567 150792843 -1744416 - B4A SINE B4 -24 268 1 5 1735 236 329 142 7 chr5 150793982 150794123 -1743136 + RMER21B LTR ERV1 408 567 -275 5 1735 226 301 0 24 chr5 150794362 150794447 -1742812 + G-rich Low_complexity Low_complexity 4 86 0 5 1735 450 225 152 12 chr5 150794549 150794723 -1742536 - B3A SINE B2 -29 187 2 5 1735 399 89 0 0 chr5 150794834 150794890 -1742369 + (TTG)n Simple_repeat Simple_repeat 2 57 0 5 1735 1180 219 132 9 chr5 150796031 150796371 -1740888 - MTD LTR MaLR 0 419 38 5 1735 796 216 19 0 chr5 150797326 150797488 -1739771 - B3 SINE B2 -49 167 3 5 1735 1740 161 66 20 chr5 150797507 150797685 -1739574 - RMER17C LTR ERVK 0 410 226 5 1735 504 0 0 0 chr5 150797685 150797741 -1739518 + (GA)n Simple_repeat Simple_repeat 2 57 0 5 1735 1740 161 66 20 chr5 150797741 150797954 -1739305 - RMER17C LTR ERVK -185 225 2 5 1735 216 0 0 0 chr5 150798462 150798486 -1738773 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 5 1735 870 201 111 5 chr5 150799283 150799473 -1737786 + B3 SINE B2 2 211 -5 5 1735 800 160 8 22 chr5 150799533 150799667 -1737592 + B1_Mus2 SINE Alu 1 132 -15 5 1735 435 63 0 0 chr5 150799673 150799736 -1737523 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 5 1735 1315 181 142 11 chr5 150800625 150800983 -1736276 - MTD LTR MaLR -14 405 1 5 1735 23 54 0 0 chr5 150801408 150801445 -1735814 + AT_rich Low_complexity Low_complexity 1 37 0 5 1735 208 163 0 23 chr5 150801704 150801748 -1735511 + A-rich Low_complexity Low_complexity 6 48 0 5 1735 834 204 99 25 chr5 150802167 150802368 -1734891 + B3 SINE B2 1 216 0 5 1735 1344 68 11 6 chr5 150803276 150803454 -1733805 + B2_Mm1a SINE B2 1 179 -14 5 1735 1164 225 61 24 chr5 150803597 150803893 -1733366 + MTD LTR MaLR 19 325 -94 5 1735 3011 41 3 0 chr5 150803990 150804381 -1732878 + MTB LTR MaLR 1 392 -8 5 1735 1501 97 267 18 chr5 150804937 150805089 -1732170 - RMER17C LTR ERVK -3 407 180 5 1735 420 20 0 0 chr5 150805089 150805138 -1732121 + (GA)n Simple_repeat Simple_repeat 2 50 0 5 1735 1501 97 267 18 chr5 150805138 150805311 -1731948 - RMER17C LTR ERVK -231 179 1 5 1735 237 237 75 50 chr5 150807370 150807450 -1729809 + B1F1 SINE Alu 32 113 -36 5 1735 270 0 0 0 chr5 150807453 150807483 -1729776 + (C)n Simple_repeat Simple_repeat 1 30 0 6 1735 419 0 0 19 chr5 150807809 150807861 -1729398 + (TCC)n Simple_repeat Simple_repeat 3 53 0 6 1735 635 301 48 31 chr5 150808344 150808697 -1728562 - RLTR15 LTR ERVK 0 359 1 6 1735 368 160 10 0 chr5 150808831 150808931 -1728328 + (TG)n Simple_repeat Simple_repeat 1 101 0 6 1735 423 0 0 0 chr5 150809104 150809151 -1728108 + (TG)n Simple_repeat Simple_repeat 2 48 0 6 1735 180 0 0 0 chr5 150809373 150809393 -1727866 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 6 1735 537 275 19 0 chr5 150809548 150809708 -1727551 + RSINE1 SINE B4 3 165 0 6 1735 22 0 0 0 chr5 150809745 150809767 -1727492 + AT_rich Low_complexity Low_complexity 1 22 0 6 1735 368 296 64 11 chr5 150809995 150810197 -1727062 + L1MC LINE L1 4620 4840 -1306 6 1735 987 137 0 0 chr5 150810199 150810565 -1726694 + (TG)n Simple_repeat Simple_repeat 1 366 0 6 1735 223 208 18 36 chr5 150810939 150810994 -1726265 + B3A SINE B2 22 75 -123 6 1735 862 135 0 50 chr5 150811012 150811152 -1726107 + B1_Mus1 SINE Alu 1 133 -15 6 1735 2102 112 51 0 chr5 150811152 150811464 -1725795 + ORR1A4 LTR MaLR 2 329 0 6 1735 375 266 256 27 chr5 150812460 150812792 -1724467 - L1_Rod LINE L1 -286 5561 5154 6 1735 422 97 0 0 chr5 150812943 150813005 -1724254 - MTEb LTR MaLR -3 376 315 6 1735 1004 118 0 18 chr5 150813009 150813156 -1724103 + B2_Mm2 SINE B2 2 145 -50 6 1735 546 86 0 0 chr5 150813156 150813237 -1724022 + (TA)n Simple_repeat Simple_repeat 1 81 0 6 1735 1004 181 46 33 chr5 150813237 150813279 -1723980 + B2_Mm2 SINE B2 146 197 -1 6 1735 221 0 0 33 chr5 150813279 150813309 -1723950 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6 1735 871 277 105 0 chr5 150813314 150813552 -1723707 - MTEa LTR MaLR -116 263 1 6 1735 1238 308 80 21 chr5 150813565 150814195 -1723064 - MTEa-int LTR MaLR -8 1572 1000 6 1735 657 239 50 50 chr5 150814613 150814811 -1722448 + B3A SINE B2 1 198 0 6 1735 495 33 0 0 chr5 150815249 150815310 -1721949 + (TG)n Simple_repeat Simple_repeat 2 62 0 6 1735 846 209 35 6 chr5 150815310 150815483 -1721776 - B3 SINE B2 -29 187 10 6 1735 917 162 0 0 chr5 150816715 150816882 -1720377 + ORR1C2 LTR MaLR 2 168 -216 6 1735 326 103 29 0 chr5 150816883 150816951 -1720308 + (TCTG)n Simple_repeat Simple_repeat 1 70 0 6 1735 671 168 48 8 chr5 150816951 150817077 -1720182 + ORR1C2 LTR MaLR 249 379 -5 6 1735 626 171 146 8 chr5 150817124 150817254 -1720005 + B1_Mur3 SINE Alu 2 149 0 6 1735 218 81 27 0 chr5 150817260 150817297 -1719962 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 6 1735 27 49 0 0 chr5 150817394 150817435 -1719824 + AT_rich Low_complexity Low_complexity 1 41 0 6 1735 1193 68 0 0 chr5 150817445 150817591 -1719668 + B1_Mm SINE Alu 2 147 0 6 1735 21 0 0 0 chr5 150817642 150817663 -1719596 + AT_rich Low_complexity Low_complexity 1 21 0 6 1735 1018 199 55 0 chr5 150817676 150817877 -1719382 - B3 SINE B2 0 216 5 6 1735 307 260 9 27 chr5 150818055 150818176 -1719083 + L1M4 LINE L1 5367 5491 -693 6 1735 266 283 56 73 chr5 150818186 150818215 -1719044 + ID_B1 SINE B4 72 188 -101 6 1735 474 183 32 21 chr5 150818215 150818310 -1718949 + PB1D9 SINE Alu 9 104 -16 6 1735 223 231 9 9 chr5 150818347 150818456 -1718803 + GA-rich Low_complexity Low_complexity 2 110 0 6 1735 260 294 0 0 chr5 150818723 150818815 -1718444 + L1M4 LINE L1 5729 5820 -480 6 1735 406 246 154 30 chr5 150818812 150819013 -1718246 + Lx8 LINE L1 7127 7352 -121 6 1735 919 141 13 13 chr5 150826086 150826237 -1711022 + B3 SINE B2 1 151 -65 6 1735 531 218 83 21 chr5 150826256 150826401 -1710858 - B3 SINE B2 -62 154 1 6 1735 657 250 31 6 chr5 150826921 150827082 -1710177 - B3 SINE B2 -51 165 1 6 1735 233 75 0 24 chr5 150827451 150827492 -1709767 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 6 1735 1164 55 0 7 chr5 150827497 150827644 -1709615 - B1_Mm SINE Alu -1 146 1 6 1735 1399 66 44 0 chr5 150828521 150828704 -1708555 + B2_Mm2 SINE B2 1 191 -4 6 1735 1635 155 60 34 chr5 150828781 150828998 -1708261 + RMER17C LTR ERVK 19 413 -545 6 1735 612 50 0 0 chr5 150828998 150829078 -1708181 + (TC)n Simple_repeat Simple_repeat 2 81 0 6 1735 1635 147 66 32 chr5 150829078 150829269 -1707990 + RMER17C LTR ERVK 213 409 -1 6 1735 580 233 16 0 chr5 150829665 150829794 -1707465 + B3 SINE B2 2 132 -84 6 1735 575 307 16 5 chr5 150829968 150830161 -1707098 - Lx8 LINE L1 -275 7198 7004 6 1735 596 106 11 0 chr5 150830293 150830387 -1706872 + (GGA)n Simple_repeat Simple_repeat 3 97 0 6 1735 951 125 6 12 chr5 150830423 150830593 -1706666 + (GAA)n Simple_repeat Simple_repeat 2 170 0 6 1735 258 77 0 0 chr5 150831441 150831460 -1705799 + (A)n Simple_repeat Simple_repeat 1 19 0 6 1735 1215 48 0 0 chr5 150831460 150831605 -1705654 + B1_Mm SINE Alu 3 147 0 6 1735 258 77 0 0 chr5 150831605 150831624 -1705635 + (A)n Simple_repeat Simple_repeat 1 19 0 6 1735 551 229 8 32 chr5 150832212 150832338 -1704921 + B1_Mur1 SINE Alu 20 142 -7 6 1735 550 225 0 11 chr5 150832585 150832765 -1704494 + (TG)n Simple_repeat Simple_repeat 1 178 0 6 1735 315 248 0 0 chr5 150832786 150832891 -1704368 + (TG)n Simple_repeat Simple_repeat 1 105 0 6 1735 235 300 62 0 chr5 150833612 150833692 -1703567 + PB1D10 SINE Alu 1 85 -32 6 1735 1688 127 211 133 chr5 150834062 150834551 -1702708 - RLTR24 LTR ERV1 -2 527 1 6 1735 232 71 0 0 chr5 150834865 150834893 -1702366 + Lx7 LINE L1 6303 6330 -1366 6 1735 2145 120 38 46 chr5 150835954 150836346 -1700913 - RMER10B LTR ERVL 0 398 10 6 1735 307 282 24 0 chr5 150838731 150838816 -1698443 + GA-rich Low_complexity Low_complexity 3 89 0 6 1735 229 315 14 14 chr5 150839283 150839357 -1697902 + ID4_ SINE ID 1 74 -9 6 1735 1563 57 0 10 chr5 150839789 150839983 -1697276 + B2_Mm1t SINE B2 1 192 -1 6 1735 241 116 47 0 chr5 150840340 150840383 -1696876 + ID4_ SINE ID 39 83 0 6 1735 224 156 29 59 chr5 150840659 150840727 -1696532 + T-rich Low_complexity Low_complexity 5 70 0 6 1735 717 288 70 34 chr5 150840932 150841259 -1696000 + MER44A DNA MER2_type 1 339 0 6 1735 420 229 57 9 chr5 150841939 150842045 -1695214 + PB1D9 SINE Alu 3 113 -7 6 1735 273 340 45 72 chr5 150842100 150842433 -1694826 + MER2 DNA MER2_type 22 345 0 6 1735 22 88 0 0 chr5 150842456 150842513 -1694746 + AT_rich Low_complexity Low_complexity 1 57 0 6 1735 325 269 28 19 chr5 150842513 150842592 -1694667 + B1F1 SINE Alu 2 81 -68 6 1735 420 194 259 15 chr5 150842592 150842723 -1694536 + B3 SINE B2 2 164 -52 6 1735 426 39 0 0 chr5 150842725 150842777 -1694482 + (CA)n Simple_repeat Simple_repeat 1 52 0 6 1735 441 0 0 0 chr5 150842777 150842825 -1694434 + (GA)n Simple_repeat Simple_repeat 2 50 0 6 1735 1089 174 30 5 chr5 150844354 150844556 -1692703 - B3 SINE B2 -1 215 9 6 1735 1272 147 20 0 chr5 150845861 150846059 -1691200 - B3 SINE B2 -14 202 1 6 1735 351 0 0 0 chr5 150846968 150847007 -1690252 + (TGG)n Simple_repeat Simple_repeat 3 41 0 6 1735 878 193 109 0 chr5 150847247 150847439 -1689820 - B3 SINE B2 -3 213 1 6 1735 192 77 0 0 chr5 150849779 150849805 -1687454 + (TCTG)n Simple_repeat Simple_repeat 3 28 0 6 1735 284 231 92 0 chr5 150850289 150850354 -1686905 + ID4_ SINE ID 1 71 -12 6 1735 340 220 6 6 chr5 150850357 150850517 -1686742 + (CA)n Simple_repeat Simple_repeat 2 161 0 6 1735 736 200 11 0 chr5 150850999 150851174 -1686085 + (CA)n Simple_repeat Simple_repeat 2 178 0 6 1735 227 260 78 52 chr5 150851566 150851643 -1685616 + ID4 SINE ID 2 80 -3 6 1735 402 272 109 67 chr5 150852443 150852636 -1684623 - MER20 DNA MER1_type -6 213 13 6 1735 291 272 0 12 chr5 150852970 150853052 -1684207 + B3 SINE B2 136 216 0 6 1735 778 228 111 24 chr5 150853244 150853496 -1683763 + Lx8 LINE L1 7146 7419 -54 6 1735 189 0 0 0 chr5 150853817 150853838 -1683421 + (GGGTG)n Simple_repeat Simple_repeat 1 21 0 6 1735 207 100 0 0 chr5 150854213 150854243 -1683016 + (TTCC)n Simple_repeat Simple_repeat 2 31 0 6 1735 1002 191 80 0 chr5 150854489 150854688 -1682571 - B3 SINE B2 -1 215 1 6 1735 405 0 0 0 chr5 150855217 150855262 -1681997 + (CA)n Simple_repeat Simple_repeat 1 45 0 6 1735 320 210 23 69 chr5 150855726 150855813 -1681446 + PB1D10 SINE Alu 35 117 0 6 1735 1018 232 19 0 chr5 150855815 150856026 -1681233 + B3 SINE B2 2 216 0 6 1735 280 204 0 0 chr5 150856788 150856837 -1680422 + ID_B1 SINE B4 124 172 -52 6 1735 244 265 43 14 chr5 150856837 150856857 -1680402 + PB1D10 SINE Alu 43 113 -4 6 1735 730 169 8 0 chr5 150856987 150857105 -1680154 + B1_Mur1 SINE Alu 10 128 -21 6 1735 236 113 0 36 chr5 150857106 150857161 -1680098 + (CAGAGA)n Simple_repeat Simple_repeat 3 55 0 6 1735 184 307 40 0 chr5 150857379 150857454 -1679805 - MER5A DNA MER1_type -80 109 32 6 1735 931 202 120 18 chr5 150857913 150858205 -1679054 - ORR1D2 LTR MaLR -34 336 3 6 1735 317 32 81 0 chr5 150859271 150859333 -1677926 + (CAAA)n Simple_repeat Simple_repeat 2 68 0 6 1735 926 144 12 0 chr5 150859855 150860022 -1677237 + URR1A DNA MER1_type 56 224 -2 6 1735 213 39 0 0 chr5 150860945 150860971 -1676288 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6 1735 225 276 0 38 chr5 150861006 150861085 -1676174 - MLT1A1 LTR MaLR -12 396 321 6 1735 861 229 37 0 chr5 150861495 150861683 -1675576 + B3 SINE B2 1 195 -21 6 1735 343 210 0 0 chr5 150861928 150861990 -1675269 + ID4 SINE ID 11 72 -11 6 1735 595 261 0 0 chr5 150863383 150863513 -1673746 - ID_B1 SINE B4 -8 216 87 6 216 4240 36 32 0 chr5 150863744 150864247 -1673012 - MURVY-LTR LTR ERV1 0 519 1 7 1736 759 177 34 8 chr5 150864254 150864417 -1672842 - B3 SINE B2 -36 159 2 7 1736 1599 175 17 17 chr5 150864517 150864866 -1672393 - RLTR15 LTR ERVK -9 350 2 7 1736 195 42 0 0 chr5 150866175 150866199 -1671060 + (A)n Simple_repeat Simple_repeat 1 24 0 7 1736 185 35 0 65 chr5 150867341 150867372 -1669887 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 7 1736 209 33 0 32 chr5 150869070 150869101 -1668158 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1736 180 0 0 0 chr5 150869101 150869120 -1668139 + (GA)n Simple_repeat Simple_repeat 1 20 0 7 1736 22 35 0 0 chr5 150870204 150870233 -1667026 + AT_rich Low_complexity Low_complexity 1 29 0 7 1736 29 0 0 0 chr5 150870422 150870451 -1666808 + AT_rich Low_complexity Low_complexity 1 29 0 7 1736 512 30 15 0 chr5 150872355 150872421 -1664838 + (TG)n Simple_repeat Simple_repeat 1 67 0 7 1736 498 136 0 0 chr5 150872423 150872504 -1664755 + (GA)n Simple_repeat Simple_repeat 2 82 0 7 1736 229 250 0 0 chr5 150873032 150873084 -1664175 + L2a LINE L2 3362 3413 -13 7 1736 522 31 0 0 chr5 150873198 150873262 -1663997 + (CATA)n Simple_repeat Simple_repeat 2 65 0 7 1736 1643 118 87 93 chr5 150873262 150873618 -1663641 - ORR1B1 LTR MaLR 0 394 41 7 1736 788 77 8 0 chr5 150873634 150873751 -1663508 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 7 1736 297 75 0 0 chr5 150873752 150873792 -1663467 + (CATA)n Simple_repeat Simple_repeat 1 40 0 7 1736 259 303 0 0 chr5 150875678 150875754 -1661505 - MLT1B LTR MaLR -261 129 54 7 1736 189 0 0 0 chr5 150875761 150875782 -1661477 + (TA)n Simple_repeat Simple_repeat 1 21 0 7 1736 292 267 27 0 chr5 150876178 150876253 -1661006 + ID4_ SINE ID 5 81 -2 7 1736 557 152 9 0 chr5 150876280 150876385 -1660874 + CT-rich Low_complexity Low_complexity 4 109 0 7 1736 4229 217 51 43 chr5 150876392 150877412 -1659847 - Lx6 LINE L1 -709 6751 5724 7 1736 186 43 0 0 chr5 150877413 150877436 -1659823 + (T)n Simple_repeat Simple_repeat 1 23 0 7 1736 1001 60 0 0 chr5 150877436 150877574 -1659685 - B1_Mus1 SINE Alu 0 148 10 7 1736 461 17 17 0 chr5 150877574 150877632 -1659627 + (CCA)n Simple_repeat Simple_repeat 2 60 0 7 1736 15973 200 131 40 chr5 150877643 150878747 -1658512 - Lx6 LINE L1 -133 5744 4626 7 1736 221 0 35 0 chr5 150878747 150878776 -1658483 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 7 1736 15973 200 131 40 chr5 150878776 150879905 -1657354 - Lx6 LINE L1 -1252 4625 3486 7 1736 381 43 0 0 chr5 150879905 150879952 -1657307 + (TTGG)n Simple_repeat Simple_repeat 2 48 0 7 1736 15973 198 125 38 chr5 150879952 150881911 -1655348 - Lx6 LINE L1 -2392 3485 1174 7 1736 219 36 0 0 chr5 150881911 150881939 -1655320 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 7 1736 351 0 0 0 chr5 150881952 150881991 -1655268 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7 1736 912 48 8 0 chr5 150881991 150882110 -1655149 - B1_Mm SINE Alu -6 141 22 7 1736 1516 168 40 6 chr5 150882110 150882433 -1654826 - Lx6 LINE L1 -6538 1190 857 7 1736 1348 244 70 27 chr5 150882462 150882908 -1654351 - Lx6 LINE L1 -7205 523 59 7 1736 301 238 48 0 chr5 150882930 150883014 -1654245 - RMER17C LTR ERVK -29 381 294 7 1736 397 266 6 53 chr5 150883026 150883197 -1654062 - RMER17C LTR ERVK -247 163 1 7 1736 280 246 82 0 chr5 150883239 150883349 -1653910 - L1_Mur3 LINE L1 -7484 228 110 7 1736 815 0 11 0 chr5 150883385 150883480 -1653779 + (GA)n Simple_repeat Simple_repeat 1 96 0 7 1736 531 254 36 0 chr5 150885756 150885894 -1651365 + MTD LTR MaLR 6 148 -271 7 1736 727 196 26 84 chr5 150885909 150886182 -1651077 + RMER17B LTR ERVK 183 439 -519 7 1736 273 75 0 0 chr5 150886182 150886222 -1651037 + (TTC)n Simple_repeat Simple_repeat 2 41 0 7 1736 975 186 54 51 chr5 150886222 150886556 -1650703 + RMER17C LTR ERVK 76 410 0 7 1736 604 246 139 24 chr5 150886556 150886762 -1650497 + MTD LTR MaLR 162 391 -28 7 1736 295 143 0 17 chr5 150887042 150887101 -1650158 + B1_Mur4 SINE Alu 3 59 -90 7 1736 401 224 17 0 chr5 150887115 150887412 -1649847 + GA-rich Low_complexity Low_complexity 1 302 0 7 1736 523 190 20 0 chr5 150887419 150887519 -1649740 + B1_Mur4 SINE Alu 41 142 -8 7 1736 709 189 6 6 chr5 150887522 150887682 -1649577 + GA-rich Low_complexity Low_complexity 3 162 0 7 1736 189 0 0 0 chr5 150887782 150887803 -1649456 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 7 1736 970 244 148 19 chr5 150888180 150888498 -1648761 + MTD LTR MaLR 46 404 -15 7 1736 1498 208 75 36 chr5 150888934 150889294 -1647965 + ORR1D1 LTR MaLR 1 374 0 7 1736 245 260 0 0 chr5 150889297 150889347 -1647912 + PB1D10 SINE Alu 37 86 -31 7 1736 462 18 0 0 chr5 150889365 150889420 -1647839 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 7 1736 497 16 16 0 chr5 150889421 150889483 -1647776 + (GA)n Simple_repeat Simple_repeat 1 63 0 7 1736 21 36 0 0 chr5 150889737 150889765 -1647494 + AT_rich Low_complexity Low_complexity 1 28 0 7 1736 1433 207 51 103 chr5 150889789 150890263 -1646996 - Lx7 LINE L1 0 7696 7248 7 1736 33547 65 3 4 chr5 150890265 150895468 -1641791 + L1Md_F2 LINE L1 390 5586 -297 7 1736 8602 33 1 0 chr5 150895468 150896463 -1640796 + L1Md_F2 LINE L1 5587 6582 0 7 1736 1011 259 11 11 chr5 150896465 150896738 -1640521 - Lx7 LINE L1 -441 7255 6983 7 1736 755 207 84 145 chr5 150897275 150897663 -1639596 - RMER16 LTR ERVK 0 533 1 7 1736 5153 132 73 44 chr5 150897663 150898571 -1638688 - RMER16-int LTR ERVK 0 5406 4473 7 1736 717 255 25 6 chr5 150898589 150898747 -1638512 - B3A SINE B2 -37 161 1 7 1736 1251 192 9 0 chr5 150899027 150899241 -1638018 + B3 SINE B2 1 216 0 7 1736 342 198 29 12 chr5 150899369 150899469 -1637790 + PB1D10 SINE Alu 6 115 -12 7 1736 218 304 0 28 chr5 150899958 150900029 -1637230 + C-rich Low_complexity Low_complexity 1 69 0 7 1736 520 234 20 20 chr5 150901299 150901447 -1635812 + B1F SINE Alu 2 149 0 7 1736 221 254 15 31 chr5 150901473 150901538 -1635721 + ID4_ SINE ID 16 79 -4 7 1736 370 300 42 0 chr5 150901562 150901682 -1635577 + B1F1 SINE Alu 1 125 -24 7 1736 1096 85 0 14 chr5 150901706 150901849 -1635410 + B1_Mm SINE Alu 1 141 -6 7 1736 27 0 0 0 chr5 150901905 150901932 -1635327 + AT_rich Low_complexity Low_complexity 1 27 0 7 1736 284 154 0 0 chr5 150902228 150902293 -1634966 - Lx LINE L1 0 6654 6590 7 1736 457 245 130 21 chr5 150902301 150902493 -1634766 - B3 SINE B2 -3 213 1 7 1736 457 164 28 46 chr5 150902596 150902705 -1634554 + B3 SINE B2 10 116 -100 7 1736 1991 56 3 21 chr5 150902767 150903058 -1634201 + MTB LTR MaLR 61 346 -54 7 1736 426 283 18 9 chr5 150903087 150903201 -1634058 + PB1D10 SINE Alu 1 115 -2 7 1736 270 0 0 0 chr5 150903865 150903895 -1633364 + (TG)n Simple_repeat Simple_repeat 1 30 0 7 1736 609 235 0 0 chr5 150903917 150904096 -1633163 + (TG)n Simple_repeat Simple_repeat 2 180 0 7 1736 332 227 13 31 chr5 150904667 150904781 -1632478 + Lx8 LINE L1 4813 4955 -1188 7 1736 928 215 54 0 chr5 150904830 150905035 -1632224 - B3 SINE B2 0 216 1 7 1736 404 318 93 16 chr5 150905087 150905333 -1631926 + MLT1C LTR MaLR 4 268 -199 7 1736 241 254 16 0 chr5 150905948 150906011 -1631248 + Lx8 LINE L1 5851 5914 -1559 7 1736 422 308 0 43 chr5 150906485 150906648 -1630611 + B3A SINE B2 1 156 -42 7 1736 1183 316 89 104 chr5 150907000 150907068 -1630191 + L1_Mur3 LINE L1 1204 1278 -4569 7 1736 3044 36 0 29 chr5 150907068 150907444 -1629815 + RLTR10B2 LTR ERVK 1 365 0 7 1736 1183 294 90 52 chr5 150907444 150908290 -1628969 + L1_Mur3 LINE L1 1267 2163 -3717 7 1736 844 52 0 8 chr5 150908290 150908407 -1628852 + B1_Mus2 SINE Alu 1 116 -31 7 1736 1183 294 90 52 chr5 150908407 150908720 -1628539 + L1_Mur3 LINE L1 2164 2497 -3383 7 1736 394 371 13 62 chr5 150908755 150908804 -1628455 + Lx8 LINE L1 6684 6724 -920 7 1736 1331 57 50 17 chr5 150908804 150908984 -1628275 + B2_Mm2 SINE B2 1 186 -9 7 1736 926 327 26 13 chr5 150908984 150909339 -1627920 + Lx8 LINE L1 6577 7049 -595 7 1736 1134 83 6 12 chr5 150909339 150909509 -1627750 + B2_Mm1t SINE B2 1 169 -24 7 1736 632 269 100 34 chr5 150909525 150909794 -1627465 + Lx8 LINE L1 7184 7470 -3 7 1736 542 229 9 0 chr5 150909899 150910008 -1627251 - PB1D9 SINE Alu -8 112 3 7 1736 1151 166 13 30 chr5 150910060 150910290 -1626969 - URR1A DNA MER1_type 0 226 1 7 1736 1145 120 59 21 chr5 150910573 150910760 -1626499 - B2_Mm2 SINE B2 0 195 2 7 1736 336 281 0 35 chr5 150910768 150910853 -1626406 - ID4_ SINE ID 0 83 2 7 1736 264 40 60 0 chr5 150911024 150911074 -1626185 + (TTG)n Simple_repeat Simple_repeat 2 54 0 7 1736 480 48 0 0 chr5 150911074 150911137 -1626122 - B1_Mm SINE Alu -8 139 77 7 1736 919 203 6 0 chr5 150911187 150911369 -1625890 - ORR1D1 LTR MaLR -19 355 173 7 1736 2772 137 83 8 chr5 150911369 150911812 -1625447 - RLTR12A LTR ERVK 0 568 96 7 1736 1964 181 94 2 chr5 150911812 150912216 -1625043 + BGLII_B LTR ERVK 1 441 0 7 1736 2772 137 83 8 chr5 150912216 150912300 -1624959 - RLTR12A LTR ERVK -473 95 2 7 1736 1017 128 12 6 chr5 150912302 150912475 -1624784 - ORR1D1 LTR MaLR -200 174 1 7 1736 426 88 0 0 chr5 150913494 150913562 -1623697 + (TG)n Simple_repeat Simple_repeat 2 69 0 7 1736 621 223 26 45 chr5 150913563 150913718 -1623541 - B3A SINE B2 -46 152 1 7 1736 1105 68 0 39 chr5 150914370 150914524 -1622735 + B1_Mus1 SINE Alu 1 148 0 7 1736 232 253 11 57 chr5 150914549 150914637 -1622622 + MER77 LTR ERVL 523 606 -1 7 1736 265 288 90 33 chr5 150914789 150915001 -1622258 + L1MC5 LINE L1 6983 7206 -755 7 1736 284 176 21 32 chr5 150915738 150915832 -1621427 + CT-rich Low_complexity Low_complexity 1 93 0 7 1736 198 0 0 0 chr5 150915846 150915868 -1621391 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1736 889 249 75 82 chr5 150916463 150916682 -1620577 - MTD LTR MaLR 0 419 214 7 1736 820 238 34 14 chr5 150916682 150916891 -1620368 - B3 SINE B2 0 216 4 7 1736 889 249 75 82 chr5 150916891 150917086 -1620173 - MTD LTR MaLR -206 213 8 7 1736 960 151 210 0 chr5 150917261 150917447 -1619812 - URR1A DNA MER1_type -1 225 1 7 1736 330 26 0 0 chr5 150918917 150918956 -1618303 + (TG)n Simple_repeat Simple_repeat 1 39 0 7 1736 210 229 21 0 chr5 150918983 150919031 -1618228 + ID4_ SINE ID 6 54 -29 7 1736 727 172 15 0 chr5 150919574 150919708 -1617551 - B3 SINE B2 -29 187 52 7 1736 208 139 0 0 chr5 150920868 150920904 -1616355 + (T)n Simple_repeat Simple_repeat 1 36 0 7 1736 23 0 0 0 chr5 150921183 150921206 -1616053 + GC_rich Low_complexity Low_complexity 1 23 0 7 1736 210 118 0 0 chr5 150921248 150921282 -1615977 + (CGCGG)n Simple_repeat Simple_repeat 1 34 0 7 1736 1021 181 53 19 chr5 150922269 150922477 -1614782 + B3 SINE B2 2 216 0 8 1736 200 356 11 11 chr5 150923055 150923143 -1614116 - MIRb SINE MIR -154 114 27 8 1736 495 0 0 0 chr5 150923874 150923929 -1613330 + (TGG)n Simple_repeat Simple_repeat 2 56 0 8 1736 189 0 0 0 chr5 150923929 150923950 -1613309 + (TG)n Simple_repeat Simple_repeat 2 22 0 8 1736 368 212 12 12 chr5 150924718 150924799 -1612460 - MTD LTR MaLR 0 379 299 8 1736 1373 198 126 42 chr5 150924808 150925188 -1612071 + MTD LTR MaLR 8 419 0 8 1736 921 254 50 29 chr5 150925188 150925468 -1611791 - MTD LTR MaLR -88 331 46 8 1736 466 292 104 32 chr5 150925433 150925741 -1611518 - Kanga1 DNA Tc2 -1187 558 229 8 1736 387 291 7 15 chr5 150925753 150925889 -1611370 - RMER15 LTR ERVL -13 562 428 8 1736 195 300 0 0 chr5 150926282 150926332 -1610927 + L2b LINE L2 3249 3298 -77 8 1736 2361 49 0 7 chr5 150926677 150926967 -1610292 - L1_Mus1 LINE L1 0 6567 6280 8 1736 231 0 0 0 chr5 150926967 150926993 -1610266 + L1Md_F2 LINE L1 6061 6086 -498 8 1736 1520 86 0 0 chr5 150926998 150927195 -1610064 + L1Md_F2 LINE L1 6061 6257 -325 8 1736 222 286 21 52 chr5 150927378 150927474 -1609785 + GA-rich Low_complexity Low_complexity 5 97 0 8 1736 257 242 16 0 chr5 150928447 150928509 -1608750 - MER74B LTR ERVL -502 120 58 8 1736 371 278 246 17 chr5 150928835 150929014 -1608245 + Lx8 LINE L1 7084 7303 -170 8 1736 2439 222 53 37 chr5 150929027 150929085 -1608174 - RCHARR1 DNA MER1_type -16 958 906 8 1736 870 219 67 118 chr5 150929085 150929368 -1607891 - ORR1C2 LTR MaLR 0 384 120 8 1736 345 47 0 0 chr5 150929368 150929411 -1607848 + (CA)n Simple_repeat Simple_repeat 1 43 0 8 1736 870 219 67 118 chr5 150929411 150929532 -1607727 - ORR1C2 LTR MaLR -265 119 1 8 1736 2439 222 53 37 chr5 150929532 150930176 -1607083 - RCHARR1 DNA MER1_type -69 905 245 8 1736 389 231 143 9 chr5 150930208 150930313 -1606946 - RCHARR1 DNA MER1_type -798 176 58 8 1736 435 299 114 47 chr5 150930332 150930525 -1606734 + MER2 DNA MER2_type 133 338 -7 8 1736 233 277 173 40 chr5 150930607 150930780 -1606479 - MIR SINE MIR -6 256 61 8 1736 396 200 0 0 chr5 150931513 150931598 -1605661 + (TG)n Simple_repeat Simple_repeat 1 85 0 8 1736 572 325 31 31 chr5 150931606 150931895 -1605364 - B4A SINE B4 0 292 4 8 1736 514 248 0 0 chr5 150932267 150932380 -1604879 + B3 SINE B2 1 113 -103 8 1736 393 39 0 0 chr5 150932440 150932491 -1604768 + (CA)n Simple_repeat Simple_repeat 2 52 0 8 1736 23 0 0 0 chr5 150932495 150932518 -1604741 + AT_rich Low_complexity Low_complexity 1 23 0 8 1736 348 24 0 0 chr5 150932874 150932915 -1604344 + (CA)n Simple_repeat Simple_repeat 1 41 0 8 1736 186 43 0 0 chr5 150934466 150934489 -1602770 + (CCG)n Simple_repeat Simple_repeat 2 24 0 8 1736 742 113 0 14 chr5 150934487 150934631 -1602628 + (TCC)n Simple_repeat Simple_repeat 2 143 0 8 1736 439 222 244 44 chr5 150935187 150935305 -1601954 + B3A SINE B2 1 152 -46 8 1736 324 0 0 0 chr5 150935305 150935341 -1601918 + (CA)n Simple_repeat Simple_repeat 1 36 0 8 1736 439 222 244 44 chr5 150935341 150935382 -1601877 + B3A SINE B2 153 192 -6 8 1736 253 256 121 57 chr5 150935826 150935967 -1601292 - MTD LTR MaLR -15 404 255 8 1736 975 28 141 7 chr5 150936576 150936718 -1600541 + B2_Mm2 SINE B2 1 161 -34 8 1736 405 0 0 0 chr5 150936718 150936763 -1600496 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 8 1736 1787 196 60 8 chr5 150937184 150937570 -1599689 - MTD LTR MaLR -13 406 1 8 1736 232 294 0 0 chr5 150937728 150937796 -1599463 + MIRb SINE MIR 130 197 -71 8 1736 938 80 80 0 chr5 150937922 150938047 -1599212 - B1_Mus1 SINE Alu -13 135 1 8 1736 415 286 91 21 chr5 150939087 150939230 -1598029 - B3A SINE B2 -45 153 1 8 1736 1362 93 5 10 chr5 150939230 150939426 -1597833 - B2_Mm2 SINE B2 0 195 1 8 1736 1322 272 45 84 chr5 150939632 150940117 -1597142 + RCHARR1 DNA MER1_type 4 469 -505 8 1736 515 209 7 14 chr5 150940095 150940236 -1597023 + RCHARR1 DNA MER1_type 729 868 -106 8 1736 215 231 0 0 chr5 150940707 150940746 -1596513 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 8 1736 1104 174 29 19 chr5 150940746 150940951 -1596308 - B3 SINE B2 -9 207 1 8 1736 504 282 38 0 chr5 150941255 150941386 -1595873 + B4 SINE B4 45 180 -112 8 1736 2551 114 45 5 chr5 150942170 150942549 -1594710 - ORR1B1 LTR MaLR 0 394 1 8 1736 266 294 2 0 chr5 150942806 150942907 -1594352 - ID4 SINE ID -48 104 3 8 1736 270 330 57 0 chr5 150942914 150943020 -1594239 - PB1D7 SINE Alu -8 112 1 8 1736 261 0 0 0 chr5 150943631 150943660 -1593599 + (TG)n Simple_repeat Simple_repeat 1 29 0 8 1736 574 219 23 119 chr5 150943687 150943905 -1593354 + B3A SINE B2 2 198 0 8 1736 497 186 186 0 chr5 150944642 150944766 -1592493 - B1F SINE Alu 0 149 3 8 1736 243 0 0 0 chr5 150945918 150945945 -1591314 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 8 1736 887 138 13 33 chr5 150946267 150946417 -1590842 + B1_Mus1 SINE Alu 2 148 0 8 1736 743 95 8 8 chr5 150946452 150946569 -1590690 + B2_Mm2 SINE B2 1 117 -78 8 1736 387 0 0 0 chr5 150947642 150947685 -1589574 + (TG)n Simple_repeat Simple_repeat 2 44 0 8 1736 318 50 0 0 chr5 150947763 150947803 -1589456 + (TATG)n Simple_repeat Simple_repeat 2 41 0 8 1736 560 266 57 0 chr5 150947805 150947929 -1589330 - ID_B1 SINE B4 -10 214 84 8 1736 363 235 29 48 chr5 150948153 150948256 -1589003 - PB1D10 SINE Alu -14 103 3 8 1736 603 226 31 31 chr5 150948296 150948424 -1588835 + B1_Mur2 SINE Alu 1 128 -21 8 1736 773 236 29 0 chr5 150948713 150948887 -1588372 - B3 SINE B2 -37 179 1 8 1736 692 278 48 62 chr5 150949137 150949530 -1587729 + L1MB3 LINE L1 5443 5832 -351 8 1736 537 243 87 55 chr5 150949553 150949736 -1587523 - B3A SINE B2 -3 195 7 8 1736 447 303 115 4 chr5 150949752 150949987 -1587272 + L1MB3 LINE L1 5867 6127 -56 8 1736 22 35 0 0 chr5 150950430 150950459 -1586800 + AT_rich Low_complexity Low_complexity 1 29 0 8 1736 352 213 182 26 chr5 150950577 150950683 -1586576 - Lx8 LINE L1 -9 7464 7342 8 1736 903 87 0 0 chr5 150950683 150950809 -1586450 + (TTC)n Simple_repeat Simple_repeat 2 127 0 8 1736 352 201 340 12 chr5 150950809 150950926 -1586333 - Lx8 LINE L1 -132 7341 7187 8 1736 2083 67 70 0 chr5 150950962 150951260 -1585999 - ORR1A2 LTR MaLR -8 319 1 8 1736 2545 239 53 69 chr5 150951261 150952017 -1585242 - Lx8 LINE L1 -316 7157 6414 8 1736 710 254 5 16 chr5 150952054 150952242 -1585017 - MTD LTR MaLR -38 381 196 8 1736 491 111 0 11 chr5 150952247 150952338 -1584921 - B2_Mm2 SINE B2 0 195 106 8 1736 425 272 42 24 chr5 150952745 150952911 -1584348 + B3A SINE B2 11 179 -19 8 1736 246 239 28 0 chr5 150953149 150953220 -1584039 - ORR1D2 LTR MaLR 0 370 298 8 1736 971 83 26 52 chr5 150953458 150953611 -1583648 + B1_Mur4 SINE Alu 1 149 -1 8 1736 189 235 18 73 chr5 150953944 150953999 -1583260 - MIRm SINE MIR -140 136 85 8 1736 182 314 116 4 chr5 150955136 150955242 -1582017 - MIRc SINE MIR -138 138 25 8 1736 207 0 0 0 chr5 150955437 150955460 -1581799 + (T)n Simple_repeat Simple_repeat 1 23 0 8 1736 419 158 30 40 chr5 150956003 150956102 -1581157 - RLTR23 LTR ERV1 0 430 333 8 1736 948 248 27 56 chr5 150958665 150959030 -1578229 + ORR1E LTR MaLR 1 338 -32 8 1736 356 232 34 68 chr5 150959652 150959740 -1577519 + B3A SINE B2 83 167 -31 8 1736 317 152 10 61 chr5 150959740 150959838 -1577421 + CT-rich Low_complexity Low_complexity 6 98 0 8 1736 580 238 0 10 chr5 150959841 150960157 -1577102 + (CA)n Simple_repeat Simple_repeat 1 312 0 8 1736 252 0 0 0 chr5 150961176 150961204 -1576055 + (TG)n Simple_repeat Simple_repeat 2 29 0 8 1736 257 263 20 50 chr5 150961239 150961339 -1575920 - PB1D7 SINE Alu 0 120 24 8 1736 666 167 278 29 chr5 150961432 150961605 -1575654 + B3 SINE B2 1 216 0 8 1736 405 282 27 9 chr5 150962507 150962618 -1574641 - MLT1D LTR MaLR -356 149 37 8 1736 224 127 127 0 chr5 150962736 150962791 -1574468 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 8 1736 379 275 0 0 chr5 150962798 150962878 -1574381 - RSINE1 SINE B4 -84 81 2 8 1736 557 228 12 40 chr5 150963894 150964046 -1573213 + B3 SINE B2 56 194 -1 8 1736 256 245 0 0 chr5 150964260 150964313 -1572946 + ID_B1 SINE B4 159 211 -13 8 1736 709 216 0 14 chr5 150964514 150964655 -1572604 - B1_Mur2 SINE Alu -8 141 3 8 1736 258 353 78 0 chr5 150964668 150964770 -1572489 - PB1D10 SINE Alu -7 110 1 8 1736 1546 42 11 0 chr5 150965122 150965313 -1571946 - B2_Mm1t SINE B2 0 193 1 8 1736 249 244 51 0 chr5 150965791 150965869 -1571390 + (CATA)n Simple_repeat Simple_repeat 1 82 0 8 1736 364 141 0 14 chr5 150965869 150965941 -1571318 - RMER19B LTR ERVK -831 71 1 8 1736 854 188 96 30 chr5 150966768 150966917 -1570342 + B3 SINE B2 1 159 -57 8 1736 297 51 0 0 chr5 150966917 150966956 -1570303 + (CA)n Simple_repeat Simple_repeat 2 40 0 8 1736 854 188 96 30 chr5 150966956 150967004 -1570255 + B3 SINE B2 160 211 -5 8 1736 574 290 26 41 chr5 150967057 150967251 -1570008 - B3A SINE B2 -1 197 7 8 1736 745 177 19 45 chr5 150967274 150967285 -1569974 - B1_Mur4 SINE Alu 0 150 142 8 1736 571 0 40 0 chr5 150967285 150967359 -1569900 + (GTTTG)n Simple_repeat Simple_repeat 2 78 0 8 1736 745 177 19 45 chr5 150967359 150967501 -1569758 - B1_Mur4 SINE Alu -9 141 1 8 1736 1098 226 69 6 chr5 150968474 150968796 -1568463 + MTD LTR MaLR 7 411 -8 8 1736 1130 113 83 0 chr5 150969219 150969387 -1567872 - B2_Mm2 SINE B2 -13 182 1 8 1736 225 0 0 0 chr5 150970086 150970111 -1567148 + (T)n Simple_repeat Simple_repeat 1 25 0 8 1736 29 28 0 0 chr5 150970507 150970543 -1566716 + AT_rich Low_complexity Low_complexity 1 36 0 8 1736 1155 163 58 0 chr5 150970543 150970733 -1566526 - B3 SINE B2 -14 202 2 8 1736 405 0 0 0 chr5 150970764 150970809 -1566450 + (CA)n Simple_repeat Simple_repeat 1 45 0 8 1736 402 21 0 0 chr5 150971093 150971140 -1566119 + (TG)n Simple_repeat Simple_repeat 1 47 0 8 1736 558 160 0 70 chr5 150971535 150971663 -1565596 + Lx9 LINE L1 7525 7643 -1 9 1736 183 80 0 0 chr5 150971979 150972004 -1565255 + (TG)n Simple_repeat Simple_repeat 2 26 0 9 1736 1131 180 35 0 chr5 150972108 150972308 -1564951 + B3 SINE B2 1 207 -9 9 1736 1172 63 0 0 chr5 150972531 150972674 -1564585 - B1_Mus1 SINE Alu -5 143 1 9 1736 1176 110 10 45 chr5 150972973 150973173 -1564086 - B2_Mm2 SINE B2 0 195 3 9 1736 342 247 20 30 chr5 150973215 150973315 -1563944 - L1MB3 LINE L1 -64 6119 6021 9 1736 475 308 20 27 chr5 150973652 150973802 -1563457 + B3A SINE B2 43 191 -7 9 1736 569 263 0 0 chr5 150974021 150974135 -1563124 + PB1D10 SINE Alu 2 115 -2 9 1736 342 108 65 0 chr5 150975060 150975153 -1562106 + T-rich Low_complexity Low_complexity 2 100 0 9 1736 312 70 0 0 chr5 150975405 150975448 -1561811 + (TG)n Simple_repeat Simple_repeat 2 44 0 9 1736 464 276 99 12 chr5 150975448 150975620 -1561639 - B3 SINE B2 -28 188 2 9 1736 667 181 0 52 chr5 150976884 150976995 -1560264 + B1_Mur4 SINE Alu 24 134 -16 9 1736 387 0 0 0 chr5 150976995 150977038 -1560221 + (CA)n Simple_repeat Simple_repeat 2 44 0 9 1736 667 181 0 52 chr5 150977038 150977060 -1560199 + B1_Mur4 SINE Alu 135 150 0 9 1736 933 182 75 0 chr5 150977142 150977329 -1559930 + B3 SINE B2 4 204 -12 9 1736 779 173 216 0 chr5 150977646 150977808 -1559451 - B3 SINE B2 -18 198 2 9 1736 263 262 0 9 chr5 150978329 150978437 -1558822 + (CA)n Simple_repeat Simple_repeat 2 108 0 9 1736 1306 144 31 36 chr5 150979465 150979688 -1557571 - URR1B DNA MER1_type -2 223 2 9 1736 274 282 29 0 chr5 150979754 150979817 -1557442 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 9 1736 344 77 19 0 chr5 150979817 150979869 -1557390 + (TG)n Simple_repeat Simple_repeat 2 54 0 9 1736 274 282 29 0 chr5 150979869 150979908 -1557351 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 9 1736 221 0 35 0 chr5 150979973 150980002 -1557257 + (TTA)n Simple_repeat Simple_repeat 3 32 0 9 1736 347 142 13 0 chr5 150980052 150980116 -1557143 - B2_Mm2 SINE B2 -83 115 46 9 1736 1295 85 11 6 chr5 150980147 150980324 -1556935 - B2_Mm1t SINE B2 -14 179 2 9 1736 312 323 63 19 chr5 150980461 150980619 -1556640 - RSINE1 SINE B4 0 165 1 9 1736 294 29 0 0 chr5 150980668 150980703 -1556556 + (TCC)n Simple_repeat Simple_repeat 1 35 0 9 1736 654 13 0 0 chr5 150980711 150980786 -1556473 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 9 1736 2845 48 2 46 chr5 150981760 150982170 -1555089 + MTB LTR MaLR 1 392 -8 9 1736 1402 149 18 5 chr5 150982688 150982910 -1554349 - URR1B DNA MER1_type 0 225 1 9 1736 872 150 6 0 chr5 150983383 150983543 -1553716 + CT-rich Low_complexity Low_complexity 2 162 0 9 1736 1105 72 0 0 chr5 150984172 150984310 -1552949 + B1_Mus1 SINE Alu 2 139 -9 9 1736 315 0 0 0 chr5 150984310 150984345 -1552914 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 9 1736 1022 88 0 26 chr5 150984347 150984499 -1552760 + B2_Mm2 SINE B2 3 150 -45 9 1736 336 221 0 0 chr5 150984501 150984578 -1552681 + (TG)n Simple_repeat Simple_repeat 2 78 0 9 1736 223 83 28 0 chr5 150984578 150984614 -1552645 + (TA)n Simple_repeat Simple_repeat 1 37 0 9 1736 234 62 0 0 chr5 150984632 150984664 -1552595 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9 1736 471 63 0 0 chr5 150984668 150984731 -1552528 + (GGAA)n Simple_repeat Simple_repeat 3 65 0 9 1736 240 163 0 0 chr5 150985219 150985262 -1551997 + (TATG)n Simple_repeat Simple_repeat 4 46 0 9 1736 578 218 55 0 chr5 150985356 150985504 -1551755 + B3 SINE B2 1 165 -33 9 1736 21 36 0 0 chr5 150985550 150985578 -1551681 + AT_rich Low_complexity Low_complexity 1 28 0 9 1736 350 212 82 0 chr5 150985617 150985702 -1551557 + B1F SINE Alu 26 117 -32 9 1736 1126 184 19 0 chr5 150985828 150986034 -1551225 - B3 SINE B2 -4 212 3 9 1736 223 377 0 13 chr5 150986748 150986826 -1550433 - ID4 SINE ID -6 77 1 9 1736 258 252 0 0 chr5 150986950 150987065 -1550194 + (TG)n Simple_repeat Simple_repeat 2 116 0 9 1736 527 264 142 43 chr5 150987067 150987229 -1550030 - B3A SINE B2 -17 181 4 9 1736 1026 156 40 11 chr5 150987264 150987439 -1549820 - B2_Mm2 SINE B2 -14 181 2 9 1736 848 99 41 34 chr5 150988292 150988439 -1548820 + URR1A DNA MER1_type 79 226 0 9 1736 294 95 0 0 chr5 150988627 150988669 -1548590 + (TCC)n Simple_repeat Simple_repeat 3 44 0 9 1736 503 222 17 25 chr5 150989678 150989798 -1547461 - PB1D9 SINE Alu -1 119 1 9 1736 207 0 0 0 chr5 150991025 150991048 -1546211 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 9 1736 1355 76 21 21 chr5 150991543 150991731 -1545528 - B2_Mm2 SINE B2 -6 189 2 9 1736 271 307 45 62 chr5 150991771 150991948 -1545311 + Tigger11a DNA MER2_type 248 421 -314 9 1736 338 150 0 32 chr5 150992114 150992176 -1545083 + B1_Mus1 SINE Alu 1 60 -88 9 1736 496 221 0 0 chr5 150992212 150992307 -1544952 + B1_Mur4 SINE Alu 41 135 -15 9 1736 396 0 0 0 chr5 150992312 150992356 -1544903 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 9 1736 828 225 27 5 chr5 150992406 150992594 -1544665 + B3A SINE B2 1 192 -6 9 1736 22 0 0 0 chr5 150992670 150992692 -1544567 + AT_rich Low_complexity Low_complexity 1 22 0 9 1736 469 309 68 0 chr5 150992874 150993036 -1544223 - MER2 DNA MER2_type -55 290 118 9 1736 198 259 23 12 chr5 150993135 150993307 -1543952 + (TG)n Simple_repeat Simple_repeat 1 174 0 9 1736 416 270 22 28 chr5 150993320 150993499 -1543760 + (TG)n Simple_repeat Simple_repeat 1 178 0 9 1736 435 234 123 7 chr5 150993515 150993653 -1543606 - B4A SINE B4 -10 282 129 9 1736 275 288 0 0 chr5 150993810 150993869 -1543390 - tRNA-Ala-GCY_ tRNA tRNA -14 61 3 9 1736 677 233 24 90 chr5 150994043 150994255 -1543004 - B3A SINE B2 0 198 1 9 3 24 85 0 0 chr5 150994891 150994950 -1542309 + AT_rich Low_complexity Low_complexity 1 59 0 9 1737 198 0 0 0 chr5 150995028 150995050 -1542209 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 9 1737 372 200 70 0 chr5 150995067 150995167 -1542092 + BC1_Mm scRNA scRNA 16 122 -30 9 1737 285 200 0 0 chr5 150995662 150995717 -1541542 - B2_Mm2 SINE B2 -94 101 47 9 1737 1364 79 23 0 chr5 150995768 150995945 -1541314 - B2_Mm2 SINE B2 -14 181 1 9 1737 23 78 0 0 chr5 150995960 150996011 -1541248 + AT_rich Low_complexity Low_complexity 1 51 0 9 1737 612 178 194 32 chr5 150996093 150996279 -1540980 - B3 SINE B2 0 216 1 9 1737 1181 48 7 0 chr5 150996904 150997050 -1540209 - B1_Mus1 SINE Alu -1 147 1 9 1737 251 245 19 0 chr5 150997334 150997387 -1539872 - ID SINE ID -147 77 24 9 1737 375 105 0 0 chr5 150997804 150997861 -1539398 + (CAGA)n Simple_repeat Simple_repeat 4 60 0 9 1737 248 172 0 17 chr5 150997891 150997950 -1539309 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 9 1737 399 68 0 0 chr5 150998007 150998066 -1539193 + (TG)n Simple_repeat Simple_repeat 1 59 0 9 1737 252 0 0 0 chr5 150998245 150998273 -1538986 + (A)n Simple_repeat Simple_repeat 1 28 0 9 1737 216 0 0 0 chr5 150999675 150999699 -1537560 + (T)n Simple_repeat Simple_repeat 1 24 0 9 1737 842 239 66 0 chr5 151000324 151000521 -1536738 - B3 SINE B2 0 216 7 1 1737 180 0 0 0 chr5 151000544 151000564 -1536695 + (TA)n Simple_repeat Simple_repeat 2 21 0 2 1737 1960 165 68 0 chr5 151000789 151001141 -1536118 + ORR1C1 LTR MaLR 1 376 -2 3 1737 525 235 0 0 chr5 151001245 151001424 -1535835 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1737 291 136 0 0 chr5 151001457 151001516 -1535743 + (TG)n Simple_repeat Simple_repeat 2 60 0 4 1737 351 203 13 26 chr5 151001946 151002022 -1535237 - ID2 SINE ID -4 79 5 5 1737 481 99 12 12 chr5 151002119 151002201 -1535058 + (GGGA)n Simple_repeat Simple_repeat 1 82 0 6 1737 480 233 99 8 chr5 151002201 151002322 -1534937 - B3A SINE B2 -66 132 1 7 1737 387 256 59 22 chr5 151002336 151002472 -1534787 - B1F SINE Alu -8 141 1 8 1737 194 200 76 15 chr5 151003546 151003612 -1533647 + L2c LINE L2 3222 3291 -96 9 1737 199 0 31 31 chr5 151003774 151003806 -1533453 + (TC)n Simple_repeat Simple_repeat 1 32 0 1 1737 343 159 19 9 chr5 151003807 151003915 -1533344 + (CAGA)n Simple_repeat Simple_repeat 4 112 0 1 1737 465 268 26 9 chr5 151004782 151004895 -1532364 + PB1D10 SINE Alu 3 117 0 1 1737 819 206 14 0 chr5 151005216 151005362 -1531897 - B1_Mur1 SINE Alu -1 148 1 1 1737 1342 156 46 19 chr5 151006253 151006514 -1530745 - Lx LINE L1 0 6654 6387 1 1737 989 84 0 7 chr5 151006514 151006669 -1530590 + (TA)n Simple_repeat Simple_repeat 2 155 0 1 1737 363 44 0 0 chr5 151006854 151006899 -1530360 + (TG)n Simple_repeat Simple_repeat 1 45 0 1 1737 656 192 185 11 chr5 151007096 151007114 -1530145 - B3 SINE B2 0 216 197 1 1737 189 0 0 0 chr5 151007114 151007135 -1530124 + (TG)n Simple_repeat Simple_repeat 2 22 0 1 1737 656 192 185 11 chr5 151007135 151007300 -1529959 - B3 SINE B2 -20 196 1 1 1737 1168 88 0 0 chr5 151007417 151007565 -1529694 - B1_Mus1 SINE Alu 0 148 1 1 1737 711 239 77 31 chr5 151008410 151008439 -1528820 - B3 SINE B2 -5 211 183 2 1737 396 0 0 0 chr5 151008439 151008483 -1528776 + (TG)n Simple_repeat Simple_repeat 1 44 0 2 1737 711 239 77 31 chr5 151008483 151008647 -1528612 - B3 SINE B2 -34 182 9 2 1737 648 38 0 0 chr5 151008667 151008746 -1528513 + (TTC)n Simple_repeat Simple_repeat 3 81 0 2 1737 1371 63 34 6 chr5 151008758 151008933 -1528326 - B2_Mm2 SINE B2 -14 181 2 2 1737 1144 82 0 0 chr5 151009253 151009400 -1527859 - B1_Mus1 SINE Alu 0 148 2 2 1737 804 165 216 0 chr5 151009427 151009603 -1527656 + B3 SINE B2 3 216 0 2 1737 347 209 9 26 chr5 151011011 151011124 -1526135 + GA-rich Low_complexity Low_complexity 1 111 0 2 1737 411 226 0 34 chr5 151011641 151012000 -1525259 + CT-rich Low_complexity Low_complexity 1 346 0 2 1737 473 322 42 93 chr5 151012002 151012316 -1524943 - Lx9 LINE L1 -174 7470 7131 2 1737 2153 88 3 15 chr5 151012327 151012651 -1524608 + ORR1A3 LTR MaLR 7 326 0 2 1737 1138 66 0 0 chr5 151013056 151013208 -1524051 - B2_Mm2 SINE B2 -41 154 3 3 1737 375 160 0 0 chr5 151013365 151013440 -1523819 + (TA)n Simple_repeat Simple_repeat 2 76 0 3 1737 182 37 37 0 chr5 151013485 151013512 -1523747 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 3 1737 28 0 0 0 chr5 151014176 151014204 -1523055 + AT_rich Low_complexity Low_complexity 1 28 0 3 1737 25 31 0 0 chr5 151014325 151014357 -1522902 + AT_rich Low_complexity Low_complexity 1 32 0 3 1737 579 202 8 23 chr5 151014394 151014526 -1522733 - B3 SINE B2 -85 131 2 3 1737 1327 156 37 0 chr5 151014678 151014896 -1522363 - URR1A DNA MER1_type 0 226 1 3 1737 208 135 0 0 chr5 151014948 151014985 -1522274 + (C)n Simple_repeat Simple_repeat 1 37 0 3 1737 312 27 0 0 chr5 151015461 151015498 -1521761 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 3 1737 21 0 0 0 chr5 151015676 151015697 -1521562 + GC_rich Low_complexity Low_complexity 1 21 0 3 1737 1136 276 91 41 chr5 151015717 151016136 -1521123 - Lx9 LINE L1 -203 7441 7002 4 1737 854 204 62 111 chr5 151017151 151017377 -1519882 + B3 SINE B2 2 216 0 4 1737 220 286 43 11 chr5 151017449 151017541 -1519718 + MIR SINE MIR 46 140 -68 4 1737 651 244 147 4 chr5 151017904 151018155 -1519104 + Lx9 LINE L1 7318 7604 -40 4 1737 516 250 94 37 chr5 151019202 151019656 -1517603 - L1M4c LINE L1 -3591 3257 2757 4 1737 1092 191 10 0 chr5 151019933 151020132 -1517127 + B3 SINE B2 7 207 -9 4 1737 21 36 0 0 chr5 151020134 151020162 -1517097 + AT_rich Low_complexity Low_complexity 1 28 0 4 1737 285 277 115 6 chr5 151020219 151020375 -1516884 - L1M4c LINE L1 -4494 2356 2184 4 1737 207 69 0 0 chr5 151020404 151020433 -1516826 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4 1737 989 305 87 27 chr5 151020682 151021083 -1516176 - Lx8 LINE L1 -174 7299 6875 4 1737 285 227 42 7 chr5 151021137 151021216 -1516043 - B4A SINE B4 -123 169 88 4 1737 1283 148 14 37 chr5 151021238 151021455 -1515804 - B3 SINE B2 -4 212 1 5 1737 293 245 143 44 chr5 151021455 151021646 -1515613 - L1M3d LINE L1 -4699 2245 2125 5 1737 699 99 0 0 chr5 151021654 151021755 -1515504 + (TG)n Simple_repeat Simple_repeat 2 102 0 5 1737 437 299 27 42 chr5 151021805 151022152 -1515107 - L1M3d LINE L1 -4610 2169 1900 5 1737 519 287 8 8 chr5 151022208 151022338 -1514921 - RSINE1 SINE B4 -32 133 4 5 1737 374 237 103 0 chr5 151022483 151022580 -1514679 + PB1 SINE Alu 5 111 -16 5 1737 229 307 13 13 chr5 151022600 151022676 -1514583 + ID4 SINE ID 7 82 -1 5 1737 807 190 14 7 chr5 151024822 151024960 -1512299 + B1_Mur2 SINE Alu 1 139 -10 5 1737 333 62 0 0 chr5 151025490 151025538 -1511721 + (TG)n Simple_repeat Simple_repeat 2 49 0 5 1737 765 246 29 0 chr5 151025538 151025709 -1511550 - B3 SINE B2 -28 188 13 5 1737 225 0 0 0 chr5 151025796 151025821 -1511438 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5 1737 772 105 48 0 chr5 151025824 151025948 -1511311 + B1_Mur4 SINE Alu 1 130 -20 6 1737 387 0 0 0 chr5 151026784 151026827 -1510432 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 6 1737 22 56 0 0 chr5 151026833 151026869 -1510390 + AT_rich Low_complexity Low_complexity 1 36 0 6 1737 313 200 72 6 chr5 151026980 151027214 -1510045 + (TA)n Simple_repeat Simple_repeat 1 249 0 6 1737 1406 177 147 7 chr5 151027226 151027533 -1509726 - MTD LTR MaLR -69 350 1 6 1737 785 246 107 55 chr5 151027592 151027902 -1509357 - Lx8 LINE L1 -29 7444 7119 6 1737 414 186 23 23 chr5 151027972 151028060 -1509199 + Lx7 LINE L1 5624 5711 -1985 6 1737 2090 62 10 3 chr5 151028085 151028375 -1508884 + ORR1A2 LTR MaLR 36 327 0 6 1737 569 219 0 16 chr5 151028375 151028496 -1508763 + L1_Rod LINE L1 5677 5795 -52 6 1737 741 167 8 0 chr5 151028808 151028934 -1508325 - B1_Mus2 SINE Alu 0 147 21 6 1737 1179 40 0 20 chr5 151028958 151029109 -1508150 + B1_Mus1 SINE Alu 1 148 0 7 1737 1074 99 112 0 chr5 151029121 151029282 -1507977 + B2_Mm1t SINE B2 1 179 -14 7 1737 280 173 8 34 chr5 151029348 151029414 -1507845 + B2_Mm2 SINE B2 47 114 -102 7 1737 378 0 0 0 chr5 151029421 151029463 -1507796 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 7 1737 543 214 9 9 chr5 151029546 151029659 -1507600 + PB1D9 SINE Alu 7 119 -1 7 1737 564 126 202 0 chr5 151030359 151030478 -1506781 + B1_Mur4 SINE Alu 6 148 -2 7 1737 450 0 0 0 chr5 151030601 151030651 -1506608 + (CA)n Simple_repeat Simple_repeat 1 50 0 7 1737 878 220 32 46 chr5 151030811 151031030 -1506229 - B3 SINE B2 0 216 1 7 1737 403 297 62 67 chr5 151031922 151032279 -1504980 - L1MEd LINE L1 -5018 1101 747 7 1737 973 170 28 11 chr5 151032295 151032473 -1504786 - B2_Mm2 SINE B2 -14 181 1 7 1737 659 224 42 0 chr5 151032495 151032638 -1504621 - B3 SINE B2 -29 187 39 8 1737 901 100 0 0 chr5 151032635 151032765 -1504494 + B1_Mur4 SINE Alu 20 149 -1 8 1737 212 100 25 0 chr5 151032772 151032812 -1504447 + (CAAAAA)n Simple_repeat Simple_repeat 4 44 0 8 1737 458 202 25 0 chr5 151033175 151033425 -1503834 + (TG)n Simple_repeat Simple_repeat 1 256 0 8 1737 468 305 65 119 chr5 151033667 151034054 -1503205 - RMER20B LTR ERVK -28 599 234 8 1737 183 42 0 0 chr5 151034798 151034822 -1502437 + (TG)n Simple_repeat Simple_repeat 2 25 0 8 1737 261 315 41 0 chr5 151034902 151034975 -1502284 - MLT1A LTR MaLR -135 492 417 8 1737 452 267 30 86 chr5 151035133 151035330 -1501929 - MLT1A LTR MaLR -151 223 38 8 1737 273 29 0 0 chr5 151035453 151035487 -1501772 + (TCCCC)n Simple_repeat Simple_repeat 1 34 0 8 1737 369 174 0 0 chr5 151036578 151036647 -1500612 + (TA)n Simple_repeat Simple_repeat 1 69 0 8 1737 486 133 0 0 chr5 151036876 151036966 -1500293 + (TA)n Simple_repeat Simple_repeat 2 91 0 8 1737 276 203 0 0 chr5 151037327 151037386 -1499873 - URR1B DNA MER1_type 0 225 167 9 1737 1186 176 84 84 chr5 151037390 151037761 -1499498 - RMER10B LTR ERVL -24 374 4 9 1737 715 161 153 7 chr5 151037763 151037913 -1499346 - URR1B DNA MER1_type -54 171 1 9 1737 1202 61 0 0 chr5 151038062 151038209 -1499050 + B1_Mus1 SINE Alu 2 148 0 9 1737 276 30 0 0 chr5 151038280 151038313 -1498946 + (AGGGGG)n Simple_repeat Simple_repeat 3 35 0 9 1737 579 108 0 0 chr5 151038387 151038470 -1498789 - B3 SINE B2 -133 83 1 9 1737 830 226 18 64 chr5 151039247 151039294 -1497965 - B3 SINE B2 -8 208 173 9 1737 249 83 0 0 chr5 151039294 151039330 -1497929 + (TG)n Simple_repeat Simple_repeat 1 36 0 9 1737 830 226 18 64 chr5 151039330 151039500 -1497759 - B3 SINE B2 -44 172 1 9 1737 270 0 0 0 chr5 151040306 151040336 -1496923 + (TTA)n Simple_repeat Simple_repeat 1 30 0 9 1737 821 222 0 66 chr5 151040411 151040623 -1496636 + B3A SINE B2 1 198 0 9 1737 21 82 0 0 chr5 151041270 151041319 -1495940 + AT_rich Low_complexity Low_complexity 1 49 0 9 1737 213 163 0 75 chr5 151041660 151041683 -1495576 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1 1737 2460 93 9 0 chr5 151041683 151042007 -1495252 - ORR1A2 LTR MaLR 0 327 1 1 1737 213 163 0 75 chr5 151042007 151042036 -1495223 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 1 1737 299 193 25 51 chr5 151043070 151043110 -1494149 + (TA)n Simple_repeat Simple_repeat 2 41 0 1 1737 3324 50 2 2 chr5 151043110 151043510 -1493749 + MTB LTR MaLR 1 400 0 1 1737 454 149 32 36 chr5 151043510 151043765 -1493494 + (TA)n Simple_repeat Simple_repeat 1 254 0 1 1737 243 61 0 0 chr5 151043764 151043797 -1493462 + (GA)n Simple_repeat Simple_repeat 2 34 0 1 1737 1186 162 61 0 chr5 151043873 151044071 -1493188 - B3 SINE B2 -4 212 3 1 1737 604 209 55 48 chr5 151044591 151044737 -1492522 + B3 SINE B2 2 148 -68 1 1737 333 0 0 0 chr5 151044737 151044774 -1492485 + (CA)n Simple_repeat Simple_repeat 2 38 0 1 1737 982 145 0 0 chr5 151045020 151045158 -1492101 + B1_Mus1 SINE Alu 1 138 -10 1 1737 242 214 0 11 chr5 151045182 151045272 -1491987 + GA-rich Low_complexity Low_complexity 2 90 0 1 1737 385 200 19 57 chr5 151045527 151045633 -1491626 - MLT1B LTR MaLR -274 116 15 1 1737 419 246 0 7 chr5 151046191 151046334 -1490925 + (TG)n Simple_repeat Simple_repeat 2 143 0 1 1737 273 57 0 0 chr5 151046864 151046899 -1490360 + (GGA)n Simple_repeat Simple_repeat 3 37 0 1 1737 373 253 53 67 chr5 151047061 151047269 -1489990 - RLTR15 LTR ERVK -154 205 1 1 1737 186 43 0 0 chr5 151047378 151047401 -1489858 + (TGGA)n Simple_repeat Simple_repeat 4 26 0 1 1737 762 256 9 14 chr5 151048490 151048700 -1488559 - RCHARR1 DNA MER1_type -2 972 764 1 1737 225 217 0 42 chr5 151048727 151048775 -1488484 + B3A SINE B2 73 118 -80 1 1737 279 0 0 0 chr5 151048988 151049019 -1488240 + (TG)n Simple_repeat Simple_repeat 2 32 0 1 1737 259 305 59 0 chr5 151049396 151049514 -1487745 + B3 SINE B2 1 125 -70 1 1737 1017 101 6 45 chr5 151050368 151050524 -1486735 - B1_Mur4 SINE Alu 0 150 1 1 1737 1197 77 62 57 chr5 151050525 151050717 -1486542 - B2_Mm2 SINE B2 0 195 3 1 1737 1057 158 104 42 chr5 151051029 151051241 -1486018 - URR1A DNA MER1_type 0 226 2 1 1737 229 264 62 62 chr5 151051511 151051549 -1485710 - L1MB5 LINE L1 -119 6055 6021 1 1737 3509 34 0 132 chr5 151051549 151052051 -1485208 - RLTR10C LTR ERVK 0 436 1 1 1737 229 264 62 62 chr5 151052051 151052141 -1485118 - L1MB5 LINE L1 -154 6020 5927 1 1737 1420 93 0 5 chr5 151052141 151052336 -1484923 - B2_Mm2 SINE B2 -1 194 1 1 1737 1013 236 80 4 chr5 151052373 151052637 -1484622 + MTD LTR MaLR 1 284 -135 1 1737 604 264 66 24 chr5 151052635 151052802 -1484457 + B4A SINE B4 115 288 -4 1 1737 303 28 0 0 chr5 151052857 151052893 -1484366 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1737 349 301 143 19 chr5 151052935 151053145 -1484114 + MER33 DNA MER1_type 6 241 -83 1 1737 549 0 0 0 chr5 151053809 151053870 -1483389 + (TC)n Simple_repeat Simple_repeat 2 62 0 1 1737 833 183 0 14 chr5 151053872 151054016 -1483243 - B1_Mus1 SINE Alu -6 142 1 1 1737 1224 41 0 20 chr5 151055445 151055594 -1481665 - B1_Mus2 SINE Alu 0 147 2 1 1737 796 269 61 22 chr5 151055595 151055872 -1481387 - ORR1E LTR MaLR -38 321 34 1 1737 604 280 11 49 chr5 151055881 151056065 -1481194 + B3 SINE B2 35 211 -5 1 1737 243 253 13 39 chr5 151057565 151057643 -1479616 + ID4 SINE ID 5 80 -3 1 1737 1517 58 16 0 chr5 151057720 151057910 -1479349 - B2_Mm2 SINE B2 -2 193 1 1 1737 237 33 0 0 chr5 151057911 151057941 -1479318 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1 1737 258 56 0 0 chr5 151058508 151058544 -1478715 + (TCTG)n Simple_repeat Simple_repeat 3 38 0 1 1737 673 240 40 14 chr5 151058546 151058694 -1478565 - RSINE1 SINE B4 -12 153 2 1 1737 234 208 0 0 chr5 151059333 151059386 -1477873 + (ATGGTG)n Simple_repeat Simple_repeat 5 57 0 1 1737 228 272 155 81 chr5 151059425 151059573 -1477686 + MIRc SINE MIR 78 236 -32 1 1737 474 179 35 0 chr5 151059614 151059787 -1477472 + CT-rich Low_complexity Low_complexity 1 179 0 1 1737 261 0 0 0 chr5 151059836 151059865 -1477394 + (CA)n Simple_repeat Simple_repeat 1 29 0 1 1737 626 220 220 0 chr5 151060456 151060633 -1476626 - B3 SINE B2 0 216 1 1 1737 542 161 229 0 chr5 151060665 151060783 -1476476 + B1_Mus2 SINE Alu 2 146 -1 1 1737 23 33 0 0 chr5 151061515 151061545 -1475714 + GC_rich Low_complexity Low_complexity 1 30 0 1 1737 456 51 0 0 chr5 151062083 151062142 -1475117 + (CA)n Simple_repeat Simple_repeat 1 59 0 1 1737 29 0 0 0 chr5 151062924 151062953 -1474306 + AT_rich Low_complexity Low_complexity 1 29 0 1 1737 216 0 0 0 chr5 151063032 151063056 -1474203 + (TC)n Simple_repeat Simple_repeat 1 24 0 1 1737 246 286 0 61 chr5 151064646 151064728 -1472531 - L2c LINE L2 -5 3382 3306 1 1737 428 270 0 0 chr5 151066878 151066967 -1470292 + ID_B1 SINE B4 83 171 -53 1 1737 401 276 31 0 chr5 151066879 151066977 -1470282 + PB1D10 SINE Alu 3 103 -14 1 1737 239 54 27 0 chr5 151067250 151067287 -1469972 + (TG)n Simple_repeat Simple_repeat 2 39 0 1 1737 288 262 0 0 chr5 151067287 151067343 -1469916 - tRNA-Ala-GCA tRNA tRNA -13 62 7 1 1737 337 298 104 123 chr5 151067602 151068016 -1469243 + RMER10A LTR ERVL 12 417 -25 1 1737 341 307 114 0 chr5 151068173 151068287 -1468972 - MER94 DNA AcHobo 0 134 8 1 1737 643 202 149 6 chr5 151068451 151068625 -1468634 - B3 SINE B2 -17 199 1 1 1737 624 91 0 0 chr5 151068785 151068873 -1468386 + (TC)n Simple_repeat Simple_repeat 1 88 0 1 1737 192 158 0 0 chr5 151068884 151068922 -1468337 + (CA)n Simple_repeat Simple_repeat 1 38 0 1 1737 275 296 0 0 chr5 151069135 151069206 -1468053 + ID4 SINE ID 2 72 -11 1 1737 507 45 0 0 chr5 151069248 151069314 -1467945 + (CATA)n Simple_repeat Simple_repeat 2 67 0 1 1737 326 230 103 0 chr5 151069478 151069565 -1467694 + B3 SINE B2 113 208 -8 1 1737 1134 179 19 19 chr5 151070123 151070334 -1466925 + B3 SINE B2 2 212 -4 1 1737 1045 180 16 26 chr5 151070588 151070782 -1466477 + B2_Mm2 SINE B2 4 195 0 1 1737 315 71 0 0 chr5 151070782 151070824 -1466435 + (GAAA)n Simple_repeat Simple_repeat 3 44 0 1 1737 861 217 85 5 chr5 151070916 151070947 -1466312 - B3 SINE B2 -1 215 184 1 1737 288 0 0 0 chr5 151070947 151070979 -1466280 + (TG)n Simple_repeat Simple_repeat 2 33 0 1 1737 861 217 85 5 chr5 151070979 151071146 -1466113 - B3 SINE B2 -33 183 1 1 1737 2082 107 58 0 chr5 151071291 151071601 -1465658 + ORR1A4 LTR MaLR 1 328 -1 1 1737 21 0 0 0 chr5 151072023 151072044 -1465215 + AT_rich Low_complexity Low_complexity 1 21 0 1 1737 433 317 0 32 chr5 151072199 151072323 -1464936 - B1F2 SINE Alu -1 148 29 1 1737 327 78 15 30 chr5 151073445 151073511 -1463748 + (TG)n Simple_repeat Simple_repeat 1 65 0 1 1737 270 0 0 0 chr5 151073511 151073540 -1463719 + (GA)n Simple_repeat Simple_repeat 1 30 0 1 1737 274 265 19 19 chr5 151073855 151073959 -1463300 + (TA)n Simple_repeat Simple_repeat 1 104 0 1 1737 369 0 0 0 chr5 151074351 151074392 -1462867 + (TG)n Simple_repeat Simple_repeat 2 42 0 1 1737 1537 204 91 28 chr5 151074780 151075142 -1462117 + MTD LTR MaLR 3 387 -32 1 1737 201 74 0 0 chr5 151075147 151075174 -1462085 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 1 1737 295 354 47 16 chr5 151075416 151075545 -1461714 + RSINE1 SINE B4 8 140 -25 1 1737 243 245 0 0 chr5 151076477 151076530 -1460729 - ID4 SINE ID -19 64 12 1 1737 529 141 52 20 chr5 151076710 151076838 -1460421 + B3 SINE B2 2 134 -61 1 1737 405 39 0 0 chr5 151076838 151076889 -1460370 + (CA)n Simple_repeat Simple_repeat 2 52 0 1 1737 525 201 122 47 chr5 151076889 151076932 -1460327 + B2_Mm2 SINE B2 135 185 -10 1 1737 1419 45 39 6 chr5 151076932 151077112 -1460147 - B2_Mm2 SINE B2 -8 187 2 1 1737 575 233 0 11 chr5 151077542 151077724 -1459535 + (TTG)n Simple_repeat Simple_repeat 1 180 0 1 1737 318 338 0 27 chr5 151077756 151077905 -1459354 - HAL1-2a_MD LINE L1 -524 2500 2356 1 1737 300 327 18 0 chr5 151077910 151078023 -1459236 - PB1D10 SINE Alu -2 115 1 1 1737 586 239 39 0 chr5 151079794 151079924 -1457335 + B4A SINE B4 158 292 0 1 1737 227 157 20 0 chr5 151079928 151079979 -1457280 + (CA)n Simple_repeat Simple_repeat 1 52 0 1 1737 1173 55 0 33 chr5 151080036 151080186 -1457073 + B1_Mus2 SINE Alu 1 145 -2 1 1737 432 296 17 0 chr5 151080218 151080333 -1456926 + PB1D10 SINE Alu 1 117 0 1 1737 253 304 130 120 chr5 151080536 151080812 -1456447 - ORR1D2 LTR MaLR -67 303 25 1 1737 236 264 0 0 chr5 151081071 151081124 -1456135 + (CATG)n Simple_repeat Simple_repeat 4 56 0 1 1737 258 32 0 0 chr5 151081172 151081203 -1456056 + (TA)n Simple_repeat Simple_repeat 2 32 0 1 1737 793 194 36 36 chr5 151082492 151082658 -1454601 + B3A SINE B2 7 172 -26 1 1737 324 0 0 0 chr5 151082672 151082708 -1454551 + (CA)n Simple_repeat Simple_repeat 2 37 0 1 1737 23 0 0 0 chr5 151082722 151082745 -1454514 + AT_rich Low_complexity Low_complexity 1 23 0 1 1737 236 286 152 117 chr5 151083064 151083151 -1454108 - Charlie5 DNA MER1_type -127 2497 2410 1 1737 892 170 0 20 chr5 151083151 151083301 -1453958 + B1_Mur3 SINE Alu 3 149 0 1 1737 236 268 108 91 chr5 151083301 151083544 -1453715 - Charlie5 DNA MER1_type -215 2409 2178 1 1737 1191 166 20 0 chr5 151083781 151083980 -1453279 - B3 SINE B2 -13 203 1 1 1737 1111 219 151 76 chr5 151084349 151084719 -1452540 - MTD LTR MaLR -14 405 8 1 1737 1274 238 87 3 chr5 151084798 151085131 -1452128 + ORR1D2 LTR MaLR 8 368 -2 2 1737 476 223 142 17 chr5 151085153 151085373 -1451886 - MTEb LTR MaLR -3 376 96 2 1737 24 67 0 0 chr5 151085393 151085438 -1451821 + AT_rich Low_complexity Low_complexity 1 45 0 2 1737 363 248 19 65 chr5 151085439 151085547 -1451712 - MTEb LTR MaLR -276 103 1 2 1737 438 235 83 56 chr5 151085631 151085775 -1451484 - B1F SINE Alu -1 148 1 2 1737 636 209 37 95 chr5 151085821 151086011 -1451248 + B3A SINE B2 4 182 -16 2 1737 211 258 8 8 chr5 151086016 151086145 -1451114 + (CA)n Simple_repeat Simple_repeat 2 130 0 2 1737 462 241 0 0 chr5 151086204 151086370 -1450889 + (CA)n Simple_repeat Simple_repeat 1 166 0 2 1737 396 244 11 11 chr5 151086423 151086514 -1450745 + ID_B1 SINE B4 134 224 0 2 1737 1155 48 14 7 chr5 151086757 151086903 -1450356 - B1_Mus2 SINE Alu 0 147 1 2 1737 239 221 276 11 chr5 151086904 151086991 -1450268 + MER44B DNA MER2_type 42 151 -399 2 1737 300 288 64 0 chr5 151087067 151087192 -1450067 + MER44B DNA MER2_type 364 496 -54 2 1737 1320 229 40 63 chr5 151087241 151087619 -1449640 - ORR1D1 LTR MaLR -3 371 3 2 1737 261 326 21 52 chr5 151087648 151087745 -1449514 - RMER20B LTR ERVK -38 589 496 2 1737 693 214 110 30 chr5 151087757 151087968 -1449291 - MTD LTR MaLR -177 230 14 2 1737 405 0 0 0 chr5 151088598 151088643 -1448616 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 1737 242 95 24 0 chr5 151089317 151089359 -1447900 + (TC)n Simple_repeat Simple_repeat 2 44 0 2 1737 354 246 0 32 chr5 151089360 151089583 -1447676 + (CA)n Simple_repeat Simple_repeat 1 215 0 2 1737 876 280 81 35 chr5 151089583 151089927 -1447332 - Lx8 LINE L1 -148 7325 6966 2 1737 980 243 10 10 chr5 151090241 151090449 -1446810 + B3 SINE B2 1 208 -8 2 1737 1156 88 0 0 chr5 151091061 151091208 -1446051 - B1_Mus1 SINE Alu 0 148 2 2 1737 189 0 0 0 chr5 151091343 151091364 -1445895 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 1737 1177 310 26 48 chr5 151091368 151091869 -1445390 - Lx9 LINE L1 -178 7466 6977 2 1737 381 338 31 38 chr5 151092118 151092278 -1444981 - RSINE1 SINE B4 -1 164 6 2 1737 240 327 45 18 chr5 151092663 151092775 -1444484 + PB1D7 SINE Alu 1 115 -5 2 1737 647 187 24 0 chr5 151092776 151092942 -1444317 + GA-rich Low_complexity Low_complexity 2 171 0 2 1737 180 77 0 0 chr5 151092994 151093020 -1444239 + (T)n Simple_repeat Simple_repeat 1 26 0 2 1737 546 165 184 0 chr5 151093020 151093129 -1444130 - B1F1 SINE Alu 0 149 21 2 1737 431 303 125 14 chr5 151093129 151093164 -1444095 - ID_B1 SINE B4 0 224 65 2 1737 338 247 11 63 chr5 151094275 151094370 -1442889 - B3A SINE B2 -104 91 2 2 1737 992 210 54 0 chr5 151094381 151094586 -1442673 - B3 SINE B2 0 216 1 2 1737 27 0 0 0 chr5 151094746 151094773 -1442486 + AT_rich Low_complexity Low_complexity 1 27 0 2 1737 658 273 45 11 chr5 151095066 151095244 -1442015 + ID_B1 SINE B4 1 184 -40 2 1737 339 203 0 0 chr5 151095275 151095349 -1441910 + GA-rich Low_complexity Low_complexity 2 75 0 2 1737 434 294 9 0 chr5 151095403 151095512 -1441747 + PB1D10 SINE Alu 2 111 -6 2 1737 637 272 87 83 chr5 151095910 151096199 -1441060 + B4A SINE B4 3 292 0 2 1737 270 116 0 0 chr5 151096215 151096258 -1441001 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 1737 308 231 109 18 chr5 151096338 151096448 -1440811 + PB1D9 SINE Alu 1 120 0 2 1737 374 306 55 18 chr5 151096450 151096560 -1440699 + PB1D10 SINE Alu 3 116 -1 2 1737 714 206 7 14 chr5 151097318 151097461 -1439798 + B1_Mur2 SINE Alu 1 142 -7 2 1737 1217 180 9 23 chr5 151098902 151099118 -1438141 - B3 SINE B2 0 216 4 2 1737 216 0 0 0 chr5 151099163 151099187 -1438072 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 1737 180 0 0 0 chr5 151099187 151099206 -1438053 + (GA)n Simple_repeat Simple_repeat 1 20 0 2 1737 502 333 16 0 chr5 151099232 151099358 -1437901 - RSINE1 SINE B4 -36 129 2 2 1737 429 151 0 0 chr5 151099991 151100077 -1437182 + CT-rich Low_complexity Low_complexity 1 86 0 2 1737 219 69 0 0 chr5 151100077 151100106 -1437153 + (TTG)n Simple_repeat Simple_repeat 1 29 0 2 1737 601 261 0 7 chr5 151100134 151100277 -1436982 - B1F SINE Alu -3 146 5 2 1737 408 267 8 49 chr5 151100281 151100403 -1436856 - PB1D10 SINE Alu 0 117 1 2 1737 333 250 25 38 chr5 151100593 151100672 -1436587 - B3 SINE B2 -1 215 138 2 1737 763 159 8 31 chr5 151100749 151100879 -1436380 - B3 SINE B2 -88 128 2 2 1737 215 293 134 0 chr5 151101451 151101533 -1435726 - L3 LINE CR1 -3518 971 879 2 1737 996 115 0 13 chr5 151102950 151103100 -1434159 - B1_Mus1 SINE Alu 0 148 1 2 1737 435 236 7 169 chr5 151103144 151103292 -1433967 - B1F SINE Alu -7 142 19 2 1737 294 330 25 25 chr5 151103184 151103305 -1433954 - ID_B1 SINE B4 -18 206 86 2 1737 409 322 76 51 chr5 151103362 151103732 -1433527 - L1MC5 LINE L1 -44 7917 7539 2 1737 885 97 7 36 chr5 151104540 151104679 -1432580 + B1_Mus2 SINE Alu 13 147 0 2 1737 333 0 0 0 chr5 151105272 151105309 -1431950 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1737 767 209 38 6 chr5 151105311 151105470 -1431789 - B3 SINE B2 -51 165 2 2 1737 455 250 150 0 chr5 151105491 151105611 -1431648 + ID_B1 SINE B4 67 204 -20 2 1737 211 267 0 0 chr5 151106772 151106817 -1430442 + GA-rich Low_complexity Low_complexity 1 45 0 2 1737 282 306 5 0 chr5 151106819 151106894 -1430365 - PB1D10 SINE Alu -51 66 1 2 1737 718 207 122 26 chr5 151107085 151107274 -1429985 + B3 SINE B2 1 207 -9 2 1737 203 309 51 13 chr5 151107399 151107498 -1429761 + MIR SINE MIR 81 191 -77 2 1737 955 84 68 20 chr5 151107935 151108081 -1429178 + B2_Mm2 SINE B2 1 153 -42 2 1737 342 183 42 14 chr5 151108432 151108504 -1428755 - HAL1-3A_ME LINE L1 -809 2049 1976 2 1737 306 204 0 0 chr5 151108504 151108602 -1428657 + (TG)n Simple_repeat Simple_repeat 2 99 0 2 1737 300 167 0 0 chr5 151108605 151108653 -1428606 - HAL1-3A_ME LINE L1 -836 2022 1975 2 1737 237 197 0 0 chr5 151108669 151108740 -1428519 + (TG)n Simple_repeat Simple_repeat 2 72 0 2 1737 310 212 45 0 chr5 151109114 151109180 -1428079 + ID_B1 SINE B4 130 198 -26 2 1737 405 229 54 18 chr5 151109433 151109544 -1427715 - PB1D7 SINE Alu -1 119 5 2 1737 365 278 110 22 chr5 151110565 151110701 -1426558 + B1F1 SINE Alu 1 148 -1 2 1737 405 245 11 0 chr5 151110718 151110812 -1426447 - PB1 SINE Alu -11 116 22 2 1737 2705 34 3 60 chr5 151110944 151111291 -1425968 - IAPLTR2b LTR ERVK 0 327 1 2 1737 313 339 16 16 chr5 151111611 151111734 -1425525 - Lx8 LINE L1 -144 7329 7207 2 1737 376 227 270 37 chr5 151111767 151111982 -1425277 - Lx8 LINE L1 -350 7123 6859 2 1737 1390 107 19 0 chr5 151111982 151112198 -1425061 - ORR1B1 LTR MaLR 0 394 175 2 1737 496 211 26 9 chr5 151112260 151112375 -1424884 - B1F SINE Alu -21 128 12 2 1737 298 314 16 24 chr5 151113205 151113326 -1423933 + MER2 DNA MER2_type 136 255 -90 2 1737 747 219 156 0 chr5 151113326 151113518 -1423741 - MTD LTR MaLR 0 419 198 2 1737 344 191 11 0 chr5 151113555 151113644 -1423615 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 2 1737 180 111 0 0 chr5 151114167 151114194 -1423065 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1737 228 260 100 55 chr5 151114214 151114324 -1422935 - PB1D10 SINE Alu -2 115 1 2 1737 249 312 73 60 chr5 151114962 151115276 -1421983 - L1MEf LINE L1 -4728 1472 1155 2 1737 1094 95 7 0 chr5 151115346 151115493 -1421766 - B1_Mur4 SINE Alu -2 148 1 2 1737 303 179 0 0 chr5 151116577 151116644 -1420615 + CT-rich Low_complexity Low_complexity 2 68 0 2 1737 279 0 0 0 chr5 151116644 151116675 -1420584 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 1737 444 220 204 0 chr5 151116889 151117021 -1420238 + ORR1B1 LTR MaLR 235 393 -1 2 1737 885 224 168 43 chr5 151117135 151117415 -1419844 - ORR1D2 LTR MaLR -55 315 1 2 1737 733 135 0 0 chr5 151118505 151118616 -1418643 - B2_Mm2 SINE B2 -82 113 3 2 1737 1086 163 44 53 chr5 151119170 151119397 -1417862 + URR1A DNA MER1_type 1 225 -1 2 1737 614 242 202 4 chr5 151119813 151120041 -1417218 - Lx8 LINE L1 -2 7471 7199 2 1737 409 335 87 42 chr5 151120184 151120565 -1416694 - L1M2 LINE L1 -476 5815 5417 2 1737 470 299 7 7 chr5 151120714 151120852 -1416407 + RSINE1 SINE B4 3 140 -25 2 1737 347 0 23 0 chr5 151120854 151120897 -1416362 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 1737 1458 283 55 25 chr5 151120926 151121438 -1415821 - Lx8 LINE L1 -1 7472 6946 2 1737 284 300 29 0 chr5 151121462 151121560 -1415699 + ID2 SINE ID 1 103 -49 2 1737 289 148 0 0 chr5 151122168 151122222 -1415037 + B1_Mus1 SINE Alu 2 55 -93 2 1737 183 220 0 56 chr5 151122229 151122407 -1414852 + GA-rich Low_complexity Low_complexity 3 170 0 2 1737 424 163 94 42 chr5 151122409 151122505 -1414754 + B1_Mur4 SINE Alu 41 141 -9 2 1737 186 43 0 0 chr5 151123154 151123177 -1414082 + (CCA)n Simple_repeat Simple_repeat 1 23 0 2 1737 1017 193 49 5 chr5 151124031 151124234 -1413025 + B3 SINE B2 1 212 -4 2 1737 1402 86 11 0 chr5 151124521 151124708 -1412551 - B2_Mm2 SINE B2 -5 190 2 2 1737 953 62 0 8 chr5 151125242 151125372 -1411887 + (TCC)n Simple_repeat Simple_repeat 2 130 0 2 1737 1214 54 0 20 chr5 151125376 151125527 -1411732 - B1_Mus1 SINE Alu 0 148 1 2 1738 328 284 41 57 chr5 151126070 151126193 -1411066 - MER2 DNA MER2_type -23 322 202 2 1738 510 200 11 0 chr5 151127398 151127493 -1409766 - B1_Mur1 SINE Alu -10 139 44 2 1738 2057 87 25 19 chr5 151127545 151127861 -1409398 - ORR1A3 LTR MaLR -8 318 1 3 1738 21 36 0 0 chr5 151127861 151127889 -1409370 + AT_rich Low_complexity Low_complexity 1 28 0 3 1738 251 206 0 16 chr5 151128820 151128884 -1408375 + ID4 SINE ID 1 63 -20 3 1738 479 171 67 0 chr5 151129062 151129167 -1408092 + B3 SINE B2 105 216 0 3 1738 2067 203 52 55 chr5 151129371 151129950 -1407309 - RLTR20B3 LTR ERVK 0 577 1 3 1738 215 241 0 0 chr5 151130054 151130108 -1407151 + ID_B1 SINE B4 83 136 -88 3 1738 224 233 0 48 chr5 151130215 151130278 -1406981 + GA-rich Low_complexity Low_complexity 1 60 0 3 1738 24 0 0 0 chr5 151130371 151130395 -1406864 + AT_rich Low_complexity Low_complexity 1 24 0 3 1738 216 0 0 0 chr5 151131861 151131885 -1405374 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 1738 246 324 66 7 chr5 151132104 151132241 -1405018 - LTR37A LTR ERV1 -194 232 88 3 1738 1233 48 0 0 chr5 151132242 151132388 -1404871 + B1_Mus2 SINE Alu 1 146 -1 3 1738 198 0 0 0 chr5 151132388 151132410 -1404849 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 3 1738 185 0 40 0 chr5 151132416 151132441 -1404818 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3 1738 1222 229 170 0 chr5 151132917 151133275 -1403984 + MTD LTR MaLR 1 419 0 3 1738 291 114 0 0 chr5 151134415 151134459 -1402800 + (TATG)n Simple_repeat Simple_repeat 1 44 0 3 1738 516 281 108 12 chr5 151134459 151134625 -1402634 - B3 SINE B2 -32 184 3 3 1738 24 0 0 0 chr5 151135130 151135154 -1402105 + AT_rich Low_complexity Low_complexity 1 24 0 3 1738 1515 53 16 16 chr5 151136583 151136774 -1400485 + B2_Mm2 SINE B2 3 193 -2 3 1738 358 254 182 0 chr5 151136786 151136912 -1400347 - Lx5 LINE L1 -1151 5899 5751 3 1738 1783 136 12 36 chr5 151136915 151137244 -1400015 - ORR1A4 LTR MaLR -8 321 1 3 1738 469 231 116 52 chr5 151137246 151137401 -1399858 - Lx7 LINE L1 -1944 5752 5588 3 1738 402 231 12 6 chr5 151137571 151137623 -1399636 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 1738 1397 55 16 22 chr5 151137623 151137808 -1399451 + B2_Mm1a SINE B2 1 184 -9 3 1738 402 231 12 6 chr5 151137808 151137925 -1399334 + (TG)n Simple_repeat Simple_repeat 2 119 0 3 1738 242 258 7 22 chr5 151137968 151138103 -1399156 + GA-rich Low_complexity Low_complexity 3 135 0 3 1738 280 288 0 0 chr5 151138160 151138226 -1399033 - Lx8 LINE L1 -194 7279 7214 3 1738 276 30 0 0 chr5 151138562 151138595 -1398664 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 3 1738 279 331 13 19 chr5 151138800 151138954 -1398305 - L1M2 LINE L1 -749 5394 5242 3 1738 1080 185 60 0 chr5 151139642 151139842 -1397417 + B3 SINE B2 1 212 -4 3 1738 1688 217 56 0 chr5 151140928 151141301 -1395958 - MTD LTR MaLR -14 405 12 3 1738 393 39 0 0 chr5 151141573 151141624 -1395635 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 1738 567 185 0 156 chr5 151141624 151141797 -1395462 - B1_Mus2 SINE Alu -1 146 1 3 1738 1154 167 15 20 chr5 151141821 151142023 -1395236 - B3 SINE B2 -15 201 1 3 1738 702 160 0 0 chr5 151143074 151143205 -1394054 + CT-rich Low_complexity Low_complexity 1 131 0 3 1738 479 301 35 6 chr5 151143930 151144104 -1393155 + B3A SINE B2 4 182 -16 3 1738 216 86 0 0 chr5 151144494 151144529 -1392730 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 1738 219 313 48 0 chr5 151144532 151144615 -1392644 - PB1D7 SINE Alu -16 104 18 3 1738 229 222 48 0 chr5 151144714 151144777 -1392482 - L1MB7 LINE L1 -108 6076 6011 3 1738 1322 132 39 5 chr5 151144810 151145016 -1392243 - B3 SINE B2 -3 213 1 3 1738 211 87 21 42 chr5 151145306 151145354 -1391905 + (TTG)n Simple_repeat Simple_repeat 2 48 0 3 1738 553 165 193 0 chr5 151145512 151145621 -1391638 + B1_Mus1 SINE Alu 1 130 -18 3 1738 540 30 0 0 chr5 151145623 151145689 -1391570 + (GA)n Simple_repeat Simple_repeat 1 66 0 3 1738 207 100 0 0 chr5 151145936 151145966 -1391293 + (T)n Simple_repeat Simple_repeat 1 30 0 3 1738 1233 48 0 0 chr5 151145966 151146112 -1391147 - B1_Mus2 SINE Alu 0 147 2 3 1738 25 31 0 0 chr5 151146166 151146198 -1391061 + AT_rich Low_complexity Low_complexity 1 32 0 3 1738 195 129 0 0 chr5 151146260 151146291 -1390968 + (TTA)n Simple_repeat Simple_repeat 3 33 0 3 1738 321 254 0 0 chr5 151146747 151146861 -1390398 + (TG)n Simple_repeat Simple_repeat 2 115 0 3 1738 225 0 0 0 chr5 151147120 151147145 -1390114 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3 1738 670 78 10 10 chr5 151147565 151147668 -1389591 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 3 1738 315 0 0 0 chr5 151149410 151149445 -1387814 + (GGGAGA)n Simple_repeat Simple_repeat 1 35 0 3 1738 996 301 33 9 chr5 151149469 151149801 -1387458 + Lx8 LINE L1 6804 7143 -330 3 1738 551 281 32 11 chr5 151149817 151150004 -1387255 - MER2 DNA MER2_type -42 303 113 3 1738 219 69 0 0 chr5 151150076 151150105 -1387154 + (CAT)n Simple_repeat Simple_repeat 3 31 0 3 1738 477 250 46 0 chr5 151150124 151150232 -1387027 - RSINE1 SINE B4 -51 114 2 3 1738 569 173 71 36 chr5 151150541 151150685 -1386574 + B3A SINE B2 45 186 -7 3 1738 1402 55 44 0 chr5 151150757 151150916 -1386343 + B2_Mm1a SINE B2 2 160 -33 3 1738 222 37 0 0 chr5 151150916 151150943 -1386316 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 3 1738 1402 55 44 0 chr5 151150943 151150966 -1386293 + B2_Mm1a SINE B2 161 191 -2 3 1738 550 279 7 0 chr5 151151303 151151450 -1385809 + B1F SINE Alu 2 149 0 3 1738 284 175 16 0 chr5 151151458 151151521 -1385738 + GA-rich Low_complexity Low_complexity 1 64 0 3 1738 433 92 26 0 chr5 151151518 151151594 -1385665 + (GAAAA)n Simple_repeat Simple_repeat 5 82 0 3 1738 956 75 8 0 chr5 151151597 151151731 -1385528 + B2_Mm2 SINE B2 2 136 -59 3 1738 570 15 0 0 chr5 151151733 151151800 -1385459 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 1738 864 196 141 11 chr5 151151940 151151979 -1385280 - B3 SINE B2 0 216 180 3 1738 465 19 0 0 chr5 151151979 151152033 -1385226 + (TG)n Simple_repeat Simple_repeat 2 55 0 3 1738 864 196 141 11 chr5 151152033 151152184 -1385075 - B3 SINE B2 -37 179 2 3 1738 243 177 0 0 chr5 151152921 151152983 -1384276 + CT-rich Low_complexity Low_complexity 2 63 0 3 1738 215 286 0 0 chr5 151152983 151153032 -1384227 - ID4_ SINE ID 0 83 35 3 1738 340 214 52 67 chr5 151153133 151153268 -1383991 - B1F SINE Alu -5 144 12 3 1738 307 235 87 19 chr5 151153413 151153517 -1383742 - MLT1B LTR MaLR -16 374 264 3 1738 284 264 68 41 chr5 151153534 151153680 -1383579 - MLT1B LTR MaLR -176 214 65 3 1738 307 192 66 66 chr5 151153752 151153858 -1383401 + B1F SINE Alu 36 141 -8 3 1738 224 167 24 0 chr5 151154166 151154208 -1383051 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 3 1738 2728 158 33 10 chr5 151154906 151155422 -1381837 - RLTR11A LTR ERVK 0 528 1 3 1738 596 191 135 0 chr5 151155690 151155816 -1381443 - B1_Mus2 SINE Alu -3 144 2 3 1738 204 40 0 0 chr5 151156001 151156026 -1381233 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3 1738 222 118 0 0 chr5 151156021 151156055 -1381204 + (TTG)n Simple_repeat Simple_repeat 3 36 0 3 1738 264 239 45 0 chr5 151156125 151156192 -1381067 - PB1D10 SINE Alu -6 111 42 3 1738 765 158 0 0 chr5 151156194 151156451 -1380808 + CT-rich Low_complexity Low_complexity 1 257 0 3 1738 236 321 0 0 chr5 151157414 151157470 -1379789 - ID SINE ID -148 76 21 3 1738 1115 53 7 0 chr5 151157493 151157644 -1379615 - B2_Mm2 SINE B2 -43 152 1 3 1738 820 49 192 16 chr5 151157667 151157792 -1379467 - B1_Mm SINE Alu 0 147 1 3 1738 264 149 0 0 chr5 151158131 151158178 -1379081 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 1738 577 292 88 63 chr5 151159003 151159290 -1377969 + L1MB7 LINE L1 5590 5889 -295 3 1738 2793 142 69 28 chr5 151159290 151159798 -1377461 - RLTR24 LTR ERV1 0 529 1 3 1738 577 307 83 72 chr5 151159798 151160087 -1377172 + L1MB7 LINE L1 5890 6169 -9 3 1738 699 165 63 0 chr5 151160284 151160411 -1376848 + B1_Mus1 SINE Alu 3 137 -11 3 1738 327 25 0 0 chr5 151161085 151161125 -1376134 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 3 1738 22 0 0 0 chr5 151162813 151162835 -1374424 + AT_rich Low_complexity Low_complexity 1 22 0 3 1738 1557 204 103 29 chr5 151162953 151163332 -1373927 - MTD LTR MaLR 0 419 13 3 1738 289 306 62 44 chr5 151164266 151164379 -1372880 + PB1D10 SINE Alu 3 117 0 3 1738 810 247 53 58 chr5 151164382 151164588 -1372671 + B3 SINE B2 7 211 -5 3 1738 21 36 0 0 chr5 151164709 151164737 -1372522 + AT_rich Low_complexity Low_complexity 1 28 0 3 1738 3331 38 10 2 chr5 151165119 151165516 -1371743 - MTB LTR MaLR 0 400 1 3 1738 899 250 55 143 chr5 151165593 151165931 -1371328 + MTC LTR MaLR 6 293 -128 3 1738 5282 97 155 18 chr5 151165931 151166770 -1370489 - RMER17B LTR ERVK -4 954 1 3 1738 899 250 55 143 chr5 151166770 151166884 -1370375 + MTC LTR MaLR 294 417 -4 3 1738 449 219 14 21 chr5 151167505 151167619 -1369640 + B3A SINE B2 82 185 -10 3 1738 218 344 0 0 chr5 151167630 151167694 -1369565 + PB1D7 SINE Alu 3 66 -54 3 1738 223 274 32 0 chr5 151167807 151167869 -1369390 + B1F SINE Alu 78 141 -8 3 1738 189 0 0 0 chr5 151168854 151168875 -1368384 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1738 216 0 0 0 chr5 151168876 151168900 -1368359 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3 1738 1022 92 46 0 chr5 151168901 151169053 -1368206 - B2_Mm2 SINE B2 -34 161 3 3 1738 1055 202 25 0 chr5 151169667 151169865 -1367394 + B3 SINE B2 1 203 -13 3 1738 316 272 48 37 chr5 151170739 151170926 -1366333 - L1MA4 LINE L1 -368 5932 5744 3 1738 1000 120 108 6 chr5 151171413 151171589 -1365670 + B2_Mm2 SINE B2 2 195 0 4 1738 299 25 25 0 chr5 151172559 151172599 -1364660 + (TTTG)n Simple_repeat Simple_repeat 3 43 0 4 1738 518 228 89 0 chr5 151173578 151173701 -1363558 - B1_Mur1 SINE Alu -9 140 7 4 1738 3384 35 2 2 chr5 151174338 151174737 -1362522 - MTB LTR MaLR -1 399 1 4 1738 2297 136 61 27 chr5 151176339 151176746 -1360513 - MTC LTR MaLR 0 421 1 4 1738 394 283 9 0 chr5 151176785 151176898 -1360361 + PB1D10 SINE Alu 3 116 -1 4 1738 757 228 12 37 chr5 151177107 151177271 -1359988 - RSINE1 SINE B4 -4 161 2 4 1738 330 26 0 0 chr5 151177841 151177880 -1359379 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1738 639 227 6 39 chr5 151178521 151178677 -1358582 + ID_B1 SINE B4 73 223 -1 4 1738 230 259 198 10 chr5 151178752 151178959 -1358300 + L1MC LINE L1 4264 4509 -1637 4 1738 874 123 41 53 chr5 151179032 151179203 -1358056 - B2_Mm2 SINE B2 -14 181 13 4 1738 644 308 98 19 chr5 151179255 151180015 -1357244 + L1MC LINE L1 4595 5432 -747 4 1738 249 254 0 0 chr5 151180033 151180147 -1357112 + (GGGTG)n Simple_repeat Simple_repeat 2 115 0 4 1738 1410 69 15 36 chr5 151180342 151180538 -1356721 + B2_Mm2 SINE B2 3 194 -1 4 1738 2470 184 39 37 chr5 151180607 151181093 -1356166 - Lx5 LINE L1 -8 7042 6556 4 1738 470 206 10 20 chr5 151181093 151181192 -1356067 + B1_Mur2 SINE Alu 50 147 -2 4 1738 348 127 0 0 chr5 151181195 151181250 -1356009 + (CA)n Simple_repeat Simple_repeat 2 56 0 4 1738 831 156 0 0 chr5 151182231 151182410 -1354849 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1738 945 205 29 24 chr5 151182697 151182907 -1354352 + B3 SINE B2 1 211 -5 4 1738 1213 103 52 0 chr5 151182916 151183090 -1354169 + B2_Mm1t SINE B2 2 184 -9 4 1738 180 0 0 0 chr5 151183092 151183112 -1354147 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4 1738 189 0 0 0 chr5 151183603 151183624 -1353635 + (T)n Simple_repeat Simple_repeat 1 21 0 4 1738 734 209 7 0 chr5 151183624 151183763 -1353496 - B1_Mur3 SINE Alu 0 149 10 4 1738 757 266 19 5 chr5 151183791 151183999 -1353260 - B3 SINE B2 -5 211 1 4 1738 388 239 59 50 chr5 151184545 151184664 -1352595 - PB1D7 SINE Alu 0 120 1 4 1738 707 133 103 59 chr5 151184740 151184876 -1352383 + B1_Mur4 SINE Alu 1 142 -8 4 1738 189 0 0 0 chr5 151184877 151184898 -1352361 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4 1738 583 263 78 13 chr5 151185556 151185710 -1351549 + RSINE1 SINE B4 2 165 0 4 1738 746 208 71 50 chr5 151185758 151185956 -1351303 + B3 SINE B2 6 207 -9 4 1738 210 333 0 15 chr5 151185954 151186021 -1351238 - B2_Mm2 SINE B2 -112 83 18 4 1738 234 224 51 38 chr5 151186609 151186688 -1350571 + ID4_ SINE ID 2 81 -2 4 1738 187 259 79 22 chr5 151187109 151187222 -1350037 + MIRm SINE MIR 3 118 -150 4 1738 277 208 0 0 chr5 151188843 151188896 -1348363 + (CA)n Simple_repeat Simple_repeat 2 54 0 4 1738 729 208 0 0 chr5 151188896 151189074 -1348185 + (CATA)n Simple_repeat Simple_repeat 1 178 0 4 1738 669 213 0 0 chr5 151189093 151189262 -1347997 + (CA)n Simple_repeat Simple_repeat 2 170 0 4 1738 427 280 12 0 chr5 151189967 151190081 -1347178 + PB1D10 SINE Alu 9 126 -22 4 1738 387 233 153 23 chr5 151190082 151190231 -1347028 + B3 SINE B2 1 176 -22 4 1738 236 243 27 54 chr5 151190369 151190390 -1346869 + ID4 SINE ID 2 73 -10 4 1738 243 235 0 38 chr5 151190390 151190443 -1346816 + ID SINE ID 24 74 -150 4 1738 2496 119 5 48 chr5 151190447 151190863 -1346396 - RMER10B LTR ERVL 0 398 1 4 1738 296 64 21 0 chr5 151190899 151190946 -1346313 + (CATA)n Simple_repeat Simple_repeat 3 50 0 4 1738 375 194 148 30 chr5 151191707 151191808 -1345451 - PB1D9 SINE Alu -1 119 7 4 1738 598 288 37 0 chr5 151191859 151192022 -1345237 - B3 SINE B2 0 216 48 4 1738 643 283 87 43 chr5 151192147 151192446 -1344813 - Lx9 LINE L1 -127 7517 7206 4 1738 752 129 16 0 chr5 151193743 151193867 -1343392 - B1_Mus2 SINE Alu -1 146 21 4 1738 522 207 27 0 chr5 151193926 151194037 -1343222 + PB1D9 SINE Alu 7 120 0 4 1738 201 138 0 0 chr5 151194038 151194067 -1343192 + (GGAGAA)n Simple_repeat Simple_repeat 5 33 0 4 1738 262 157 161 10 chr5 151194129 151194212 -1343047 - B1_Mur4 SINE Alu -28 92 1 4 1738 926 99 0 34 chr5 151194978 151195115 -1342144 + B1_Mus1 SINE Alu 7 142 -6 4 1738 183 42 0 0 chr5 151195115 151195139 -1342120 + (CATA)n Simple_repeat Simple_repeat 2 25 0 4 1738 701 234 107 20 chr5 151195501 151195583 -1341676 + B3 SINE B2 4 86 -130 4 1738 3478 28 8 0 chr5 151195583 151195980 -1341279 + MTB LTR MaLR 1 400 0 4 1738 701 234 107 20 chr5 151195980 151196093 -1341166 + B3 SINE B2 87 215 -1 4 1738 313 233 27 35 chr5 151196203 151196318 -1340941 + B1_Mur1 SINE Alu 1 147 -2 4 1738 403 318 111 0 chr5 151197144 151197270 -1339989 + B1F1 SINE Alu 1 140 -9 4 1738 564 214 0 73 chr5 151197318 151197454 -1339805 + B3A SINE B2 31 156 -42 4 1738 261 0 0 0 chr5 151197463 151197492 -1339767 + (CA)n Simple_repeat Simple_repeat 2 30 0 4 1738 180 0 0 0 chr5 151197492 151197512 -1339747 + (TAAAAA)n Simple_repeat Simple_repeat 4 23 0 4 1738 219 69 0 0 chr5 151198176 151198205 -1339054 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4 1738 379 204 24 12 chr5 151199118 151199265 -1337994 + B3 SINE B2 14 215 -1 4 1738 537 16 0 0 chr5 151199660 151199722 -1337537 + (TG)n Simple_repeat Simple_repeat 2 63 0 4 1738 204 40 0 0 chr5 151199742 151199767 -1337492 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 4 1738 253 177 50 12 chr5 151199768 151199840 -1337419 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 1738 2466 106 70 13 chr5 151199840 151200213 -1337046 - ORR1B1 LTR MaLR 0 394 1 4 1738 253 177 50 12 chr5 151200213 151200220 -1337039 + (TA)n Simple_repeat Simple_repeat 2 8 0 4 1738 798 169 180 0 chr5 151201238 151201416 -1335843 + B3 SINE B2 1 210 -6 4 1738 1253 163 4 26 chr5 151202633 151202860 -1334399 + URR1A DNA MER1_type 1 222 -4 4 1738 308 266 0 25 chr5 151202931 151203012 -1334247 + ID4_ SINE ID 2 80 -3 4 1738 687 212 119 5 chr5 151203041 151203235 -1334024 + B3 SINE B2 1 216 0 4 1738 268 340 62 8 chr5 151203943 151204126 -1333133 - ORR1D2 LTR MaLR 0 370 169 4 1738 247 312 114 26 chr5 151204431 151204566 -1332693 + L1M5 LINE L1 2708 2850 -3296 4 1738 777 237 5 64 chr5 151204566 151204769 -1332490 + B3A SINE B2 1 191 -7 4 1738 247 312 114 26 chr5 151204769 151204906 -1332353 + L1M5 LINE L1 2851 3003 -3143 4 1738 1518 48 16 0 chr5 151204910 151205097 -1332162 + B2_Mm2 SINE B2 2 191 -4 4 1738 387 0 0 0 chr5 151205120 151205163 -1332096 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 4 1738 35 54 0 0 chr5 151205336 151205392 -1331867 + AT_rich Low_complexity Low_complexity 1 56 0 4 1738 301 304 152 30 chr5 151205473 151205670 -1331589 - ORR1E LTR MaLR -130 229 9 4 1738 285 164 47 47 chr5 151206626 151206690 -1330569 - ID4 SINE ID -18 65 2 4 1738 2718 35 45 3 chr5 151206939 151207317 -1329942 - MTB LTR MaLR 0 400 7 4 1738 536 53 0 0 chr5 151207308 151207384 -1329875 + B1_Mur4 SINE Alu 75 150 0 4 1738 952 219 34 5 chr5 151208175 151208381 -1328878 - B3 SINE B2 -4 212 1 4 1738 369 109 0 0 chr5 151208444 151208499 -1328760 + (TA)n Simple_repeat Simple_repeat 1 55 0 4 1738 1410 70 27 0 chr5 151208589 151208775 -1328484 - B2_Mm2 SINE B2 -3 192 2 4 1738 1040 133 149 25 chr5 151209340 151209541 -1327718 - URR1A DNA MER1_type 0 226 1 4 1738 3143 210 92 97 chr5 151209694 151210727 -1326532 - Lx6 LINE L1 -268 7428 6142 4 1738 674 171 7 20 chr5 151210727 151210876 -1326383 + Lx7 LINE L1 7399 7545 -151 4 1738 292 43 43 0 chr5 151210890 151210936 -1326323 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 4 1738 363 304 20 0 chr5 151210992 151211094 -1326165 + Lx7 LINE L1 7205 7308 -388 4 1738 30 27 0 0 chr5 151211271 151211308 -1325951 + AT_rich Low_complexity Low_complexity 1 37 0 4 1738 209 204 0 0 chr5 151211500 151211544 -1325715 + GA-rich Low_complexity Low_complexity 3 46 0 4 1738 396 239 11 11 chr5 151213436 151213529 -1323730 + RSINE1 SINE B4 2 94 -71 4 1738 365 158 0 0 chr5 151213555 151213612 -1323647 + B3 SINE B2 8 64 -152 4 1738 294 125 0 0 chr5 151213677 151213725 -1323534 + (CATA)n Simple_repeat Simple_repeat 3 50 0 4 1738 229 181 206 14 chr5 151214158 151214231 -1323028 - MER101B LTR ERV1 -196 374 288 4 1738 226 181 206 14 chr5 151214489 151214562 -1322697 - MER101B LTR ERV1 -196 374 288 4 1738 184 319 13 74 chr5 151215372 151215521 -1321738 - MIR3 SINE MIR -61 147 8 4 1738 302 215 62 41 chr5 151216099 151216196 -1321063 + L1MB3 LINE L1 6047 6145 -38 4 1738 406 228 0 0 chr5 151216197 151216276 -1320983 + ID_B1 SINE B4 146 224 0 4 1738 220 289 13 13 chr5 151216588 151216665 -1320594 + ID4_ SINE ID 2 78 -5 4 1738 425 210 13 0 chr5 151216703 151216860 -1320399 + (CATA)n Simple_repeat Simple_repeat 2 160 0 4 1738 877 225 35 10 chr5 151217523 151217725 -1319534 - B3 SINE B2 -9 207 1 4 1738 1668 181 64 25 chr5 151218013 151218371 -1318888 - ORR1D1 LTR MaLR 0 374 3 4 1738 405 0 0 0 chr5 151218530 151218575 -1318684 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4 1738 1093 89 7 0 chr5 151219056 151219202 -1318057 + B1_Mus1 SINE Alu 1 147 -1 5 1738 1311 105 21 0 chr5 151219228 151219418 -1317841 + B2_Mm2 SINE B2 2 195 0 5 1738 1196 48 0 20 chr5 151219433 151219582 -1317677 + B1_Mus1 SINE Alu 3 148 0 5 1738 817 258 61 0 chr5 151219915 151220113 -1317146 - B3 SINE B2 0 216 7 5 1738 363 314 0 0 chr5 151220612 151220717 -1316542 + PB1D10 SINE Alu 2 106 -11 5 1738 721 212 52 42 chr5 151221348 151221484 -1315775 + B3 SINE B2 1 153 -63 5 1738 1147 228 58 68 chr5 151221484 151221898 -1315361 - RMER17C LTR ERVK 0 410 1 5 1738 721 206 37 24 chr5 151221898 151221959 -1315300 + B3 SINE B2 154 216 0 5 1738 1089 73 7 0 chr5 151222000 151222136 -1315123 + B1_Mus2 SINE Alu 4 140 -7 5 1738 188 0 74 0 chr5 151222136 151222163 -1315096 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 5 1738 232 219 15 45 chr5 151222273 151222340 -1314919 - MLT1A1 LTR MaLR -21 387 323 5 1738 582 15 0 0 chr5 151222419 151222486 -1314773 + (TC)n Simple_repeat Simple_repeat 1 67 0 5 1738 875 123 72 7 chr5 151222934 151223073 -1314186 - B1_Mus1 SINE Alu 0 148 1 5 1738 212 0 0 35 chr5 151223203 151223232 -1314027 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 5 1738 955 228 14 5 chr5 151223240 151223447 -1313812 - B3 SINE B2 -5 211 3 5 1738 219 250 39 0 chr5 151223686 151223738 -1313521 + B1F SINE Alu 22 75 -74 5 1738 592 59 5 7 chr5 151223900 151223992 -1313267 - B2_Mm1a SINE B2 0 195 105 5 1738 251 292 69 0 chr5 151224186 151224258 -1313001 + MIRb SINE MIR 93 169 -99 5 1738 1419 83 0 6 chr5 151224273 151224455 -1312804 + B2_Mm2 SINE B2 1 181 -14 5 1738 346 242 32 174 chr5 151224896 151225086 -1312173 + MT2B LTR ERVL 102 264 -337 5 1738 316 277 70 76 chr5 151224970 151224983 -1312276 + B4A SINE B4 78 129 -163 5 1738 720 182 8 8 chr5 151224983 151225116 -1312143 + B1_Mur1 SINE Alu 11 143 -6 5 1738 316 277 70 76 chr5 151225116 151225142 -1312117 + B4A SINE B4 130 248 -44 5 1738 541 208 180 14 chr5 151225543 151225703 -1311556 + B3A SINE B2 1 181 -14 5 1738 744 246 38 22 chr5 151226167 151226350 -1310909 - B3 SINE B2 -2 214 29 5 1738 736 211 19 19 chr5 151226344 151226503 -1310756 + B3 SINE B2 57 215 -1 5 1738 2842 163 41 12 chr5 151226835 151227345 -1309914 - RLTR11A LTR ERVK -3 525 1 5 1738 225 0 0 0 chr5 151227381 151227406 -1309853 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 5 1738 287 315 26 53 chr5 151227440 151227612 -1309647 - L2a LINE L2 -281 3094 2931 5 1738 1380 85 0 16 chr5 151228139 151228331 -1308928 - B2_Mm2 SINE B2 -6 189 1 5 1738 1678 27 0 0 chr5 151228342 151228530 -1308729 - B2_Mm1a SINE B2 -4 189 2 5 1738 498 218 87 85 chr5 151229285 151229460 -1307799 + B3 SINE B2 1 198 0 5 1738 918 91 15 8 chr5 151229761 151229894 -1307365 + B1_Mur4 SINE Alu 3 136 -14 5 1738 317 268 60 36 chr5 151230248 151230382 -1306877 + PB1D10 SINE Alu 1 148 -1 5 1738 331 288 0 0 chr5 151231346 151231412 -1305847 + tRNA-Ala-GCY_ tRNA tRNA 3 68 -7 5 1738 231 36 0 0 chr5 151231448 151231476 -1305783 + (CA)n Simple_repeat Simple_repeat 1 28 0 5 1738 749 143 0 25 chr5 151231815 151231937 -1305322 + PB1D9 SINE Alu 2 120 0 5 1738 1564 62 0 5 chr5 151232002 151232198 -1305061 - B2_Mm2 SINE B2 0 195 1 5 1738 857 126 0 0 chr5 151232872 151232991 -1304268 - B3 SINE B2 -96 120 2 5 1738 602 219 16 0 chr5 151233235 151233358 -1303901 - RSINE1 SINE B4 -37 128 4 5 1738 473 245 0 74 chr5 151233408 151233571 -1303688 + RSINE1 SINE B4 3 153 -12 5 1738 327 91 81 52 chr5 151233721 151233895 -1303364 + (TA)n Simple_repeat Simple_repeat 1 179 0 5 1738 802 230 43 14 chr5 151233926 151234133 -1303126 + B3 SINE B2 3 215 -1 5 1738 382 188 237 18 chr5 151234852 151234966 -1302293 + B1F SINE Alu 1 139 -10 5 1738 706 235 38 54 chr5 151235036 151235075 -1302184 + B4A SINE B4 1 112 -180 5 1738 253 272 110 81 chr5 151235075 151235211 -1302048 + B1F2 SINE Alu 3 142 -7 5 1738 706 235 38 54 chr5 151235211 151235264 -1301995 + B4A SINE B4 113 272 -20 5 1738 1281 144 14 23 chr5 151235641 151235855 -1301404 - B3 SINE B2 0 216 5 5 1738 286 196 0 67 chr5 151235892 151235952 -1301307 - ID4_ SINE ID -25 58 3 5 1738 207 0 0 0 chr5 151236370 151236393 -1300866 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 5 1738 55 62 0 0 chr5 151237559 151237656 -1299603 + AT_rich Low_complexity Low_complexity 1 97 0 5 1738 422 181 41 31 chr5 151237684 151237781 -1299478 - B3 SINE B2 -110 106 9 5 1738 591 248 13 33 chr5 151237867 151238017 -1299242 + B3 SINE B2 66 212 -4 5 1738 438 242 86 79 chr5 151238021 151238160 -1299099 - B1_Mus2 SINE Alu -7 140 1 5 1738 304 22 22 22 chr5 151238171 151238217 -1299042 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 5 1738 1006 97 0 20 chr5 151238217 151238354 -1298905 - B1_Mur4 SINE Alu -8 142 6 5 1738 225 224 61 0 chr5 151238458 151238507 -1298752 + B1F SINE Alu 1 52 -97 5 1738 686 43 0 21 chr5 151238532 151238627 -1298632 + (GGGA)n Simple_repeat Simple_repeat 1 93 0 5 1738 371 322 11 0 chr5 151238680 151238767 -1298492 + B1F2 SINE Alu 53 140 -9 5 1738 180 0 0 0 chr5 151238770 151238790 -1298469 + (G)n Simple_repeat Simple_repeat 1 20 0 5 1738 278 81 0 0 chr5 151239117 151239154 -1298105 - 5S rRNA rRNA -34 87 51 5 1738 195 100 0 0 chr5 151239363 151239393 -1297866 + (CGG)n Simple_repeat Simple_repeat 2 31 0 5 1738 552 30 0 0 chr5 151240036 151240102 -1297157 + (TG)n Simple_repeat Simple_repeat 1 66 0 5 1738 201 209 0 43 chr5 151240410 151240456 -1296803 + T-rich Low_complexity Low_complexity 25 68 0 5 1738 1281 20 0 13 chr5 151240456 151240605 -1296654 - B1_Mus2 SINE Alu 0 147 1 5 1738 889 172 20 7 chr5 151240612 151240758 -1296501 - B1_Mur2 SINE Alu -1 148 1 5 1738 201 209 0 43 chr5 151240758 151240773 -1296486 + T-rich Low_complexity Low_complexity 3 17 0 5 1738 714 277 27 0 chr5 151240971 151241039 -1296220 + ID SINE ID 10 81 -143 5 1738 323 315 25 107 chr5 151241039 151241160 -1296099 + PB1D10 SINE Alu 1 111 -6 5 1738 756 164 81 15 chr5 151241551 151241687 -1295572 + B1_Mur4 SINE Alu 1 145 -5 5 1738 648 0 0 0 chr5 151241687 151241759 -1295500 + (GGAA)n Simple_repeat Simple_repeat 2 73 0 5 1738 381 213 27 0 chr5 151241786 151241861 -1295398 + RSINE1 SINE B4 5 81 -84 5 1738 972 203 27 59 chr5 151243112 151243332 -1293927 + B3 SINE B2 4 216 0 5 1738 736 254 16 5 chr5 151243707 151243897 -1293362 - B3A SINE B2 -5 193 2 5 1738 617 208 36 83 chr5 151244368 151244536 -1292723 - B3 SINE B2 -9 186 27 5 1738 862 82 3 3 chr5 151244533 151244668 -1292591 - B1_Mus2 SINE Alu -5 144 10 5 1738 226 103 0 0 chr5 151244809 151244838 -1292421 - B3 SINE B2 -173 43 15 5 1738 266 282 64 0 chr5 151244841 151244919 -1292340 + B3 SINE B2 123 205 -11 5 1738 920 238 43 10 chr5 151244946 151245154 -1292105 + B3 SINE B2 1 215 -1 5 1738 2293 127 83 19 chr5 151245155 151245546 -1291713 - RMER6A LTR ERVK 0 756 339 5 1738 285 29 0 0 chr5 151245546 151245580 -1291679 + (CCCCCT)n Simple_repeat Simple_repeat 6 39 0 5 1738 2293 127 83 19 chr5 151245580 151245607 -1291652 - RMER6A LTR ERVK -418 338 311 5 1738 194 0 39 0 chr5 151245626 151245652 -1291607 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5 1738 1093 72 0 0 chr5 151245658 151245797 -1291462 - B2_Mm2 SINE B2 -56 139 1 5 1738 718 105 137 0 chr5 151245827 151245951 -1291308 - RLTR11B LTR ERVK -312 141 1 5 1738 530 174 92 0 chr5 151246291 151246400 -1290859 + PB1D9 SINE Alu 2 120 0 5 1738 883 172 0 0 chr5 151249013 151249147 -1288112 + B1_Mur4 SINE Alu 16 149 -1 5 1738 440 214 22 11 chr5 151249169 151249259 -1288000 + B1_Mur1 SINE Alu 27 117 -32 5 1738 295 289 66 11 chr5 151249181 151249272 -1287987 + B4 SINE B4 126 221 -71 5 1738 1118 112 112 0 chr5 151250078 151250248 -1287011 + B2_Mm2 SINE B2 1 189 -6 5 1738 198 0 0 0 chr5 151250253 151250275 -1286984 + (CA)n Simple_repeat Simple_repeat 2 23 0 5 1738 776 253 41 12 chr5 151250908 151251080 -1286179 + B3 SINE B2 8 184 -32 5 1738 396 0 0 0 chr5 151251093 151251137 -1286122 + (CATA)n Simple_repeat Simple_repeat 4 47 0 5 1738 1363 70 0 36 chr5 151251325 151251517 -1285742 + B2_Mm2 SINE B2 3 187 -8 5 1738 1056 180 66 9 chr5 151251546 151251759 -1285500 + URR1B DNA MER1_type 1 225 0 5 1738 1233 48 0 0 chr5 151252544 151252689 -1284570 + B1_Mur4 SINE Alu 2 146 -4 5 1738 289 293 109 25 chr5 151252868 151252987 -1284272 + B1F2 SINE Alu 1 129 -20 5 1738 375 202 0 0 chr5 151252987 151253086 -1284173 + GA-rich Low_complexity Low_complexity 2 100 0 5 1738 993 116 13 26 chr5 151253380 151253531 -1283728 - B1_Mur3 SINE Alu 0 149 1 5 1738 276 283 43 26 chr5 151254488 151254604 -1282655 - ORR1E LTR MaLR -210 149 32 5 1738 1269 164 9 27 chr5 151254924 151255143 -1282116 - B3 SINE B2 0 216 2 5 1738 398 209 27 16 chr5 151255512 151255558 -1281701 + MT2B LTR ERVL 122 165 -419 5 1738 408 181 108 0 chr5 151255558 151255641 -1281618 + B1_Mm SINE Alu 1 92 -55 5 1738 806 168 183 6 chr5 151256173 151256353 -1280906 + B3 SINE B2 2 213 -3 5 1738 257 273 0 29 chr5 151256418 151256486 -1280773 + ID2 SINE ID 17 82 -1 6 1738 2027 166 21 19 chr5 151256595 151256970 -1280289 + MTC LTR MaLR 41 416 -5 6 1739 228 67 0 0 chr5 151257336 151257366 -1279893 + (CA)n Simple_repeat Simple_repeat 1 30 0 6 1739 566 144 8 90 chr5 151258023 151258145 -1279114 + PB1D9 SINE Alu 9 120 0 6 1739 719 165 0 0 chr5 151258158 151258267 -1278992 + B1_Mur3 SINE Alu 3 111 -38 6 1739 1338 101 21 0 chr5 151258396 151258585 -1278674 - B2_Mm2 SINE B2 -2 193 1 6 1739 498 250 235 55 chr5 151258731 151259032 -1278227 - RMER5 LTR ERV1 0 534 179 6 1739 840 142 15 22 chr5 151259067 151259204 -1278055 + B1_Mur3 SINE Alu 14 149 0 6 1739 307 221 69 11 chr5 151259227 151259314 -1277945 - RMER5 LTR ERV1 -401 133 42 6 1739 443 174 296 0 chr5 151259367 151259482 -1277777 + B1F SINE Alu 1 149 0 6 1739 575 175 35 0 chr5 151259614 151259728 -1277531 + B1_Mur1 SINE Alu 25 142 -7 6 1739 405 58 0 0 chr5 151260013 151260065 -1277194 + (CA)n Simple_repeat Simple_repeat 2 53 0 6 1739 191 333 52 31 chr5 151260409 151260505 -1276754 + L3 LINE CR1 865 962 -3527 6 1739 258 269 0 29 chr5 151261565 151261634 -1275625 + ID4 SINE ID 3 69 -14 6 1739 494 212 44 0 chr5 151261687 151261800 -1275459 + PB1D9 SINE Alu 3 120 0 6 1739 279 0 0 0 chr5 151262308 151262339 -1274920 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6 1739 1109 178 9 33 chr5 151262474 151262689 -1274570 + B3 SINE B2 2 211 -5 6 1739 406 242 83 10 chr5 151262789 151262885 -1274374 + PB1 SINE Alu 18 120 -7 6 1739 1509 72 5 0 chr5 151263041 151263234 -1274025 + B2_Mm2 SINE B2 2 195 0 6 1739 294 239 0 14 chr5 151264391 151264463 -1272796 + ID4_ SINE ID 3 73 -10 6 1739 261 119 0 0 chr5 151264717 151264759 -1272500 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 6 1739 188 34 0 33 chr5 151264790 151264820 -1272439 + (TTTTTG)n Simple_repeat Simple_repeat 5 33 0 6 1739 1274 34 0 0 chr5 151264820 151264967 -1272292 - B1_Mus2 SINE Alu 0 147 1 6 1739 655 199 256 6 chr5 151265346 151265518 -1271741 + B3 SINE B2 1 215 -1 6 1739 451 169 45 60 chr5 151265636 151265837 -1271422 + RMER17C LTR ERVK 77 274 -136 6 1739 655 216 115 0 chr5 151266770 151266918 -1270341 + B3 SINE B2 52 216 0 6 1739 2519 124 46 22 chr5 151267286 151267697 -1269562 - MTC LTR MaLR 0 421 1 6 1739 21 36 0 0 chr5 151268175 151268203 -1269056 + AT_rich Low_complexity Low_complexity 1 28 0 6 1739 228 135 0 0 chr5 151268291 151268328 -1268931 + (A)n Simple_repeat Simple_repeat 1 37 0 6 1739 713 184 72 14 chr5 151268341 151268383 -1268876 + B1_Mur3 SINE Alu 3 44 -105 6 1739 405 70 0 0 chr5 151268383 151268440 -1268819 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 6 1739 713 184 72 14 chr5 151268440 151268535 -1268724 + B1_Mur3 SINE Alu 45 146 -3 6 1739 213 121 0 0 chr5 151268535 151268568 -1268691 + (TA)n Simple_repeat Simple_repeat 1 33 0 6 1739 207 0 0 0 chr5 151269072 151269095 -1268164 + (T)n Simple_repeat Simple_repeat 1 23 0 6 1739 265 109 36 0 chr5 151270758 151270813 -1266446 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 6 1739 1483 59 16 0 chr5 151271849 151272035 -1265224 - B2_Mm2 SINE B2 -6 189 1 6 1739 459 65 0 10 chr5 151272133 151272237 -1265022 + B2_Mm2 SINE B2 47 185 -10 6 1739 1475 38 43 5 chr5 151272751 151272938 -1264321 - B2_Mm2 SINE B2 0 195 2 6 1739 225 0 0 0 chr5 151273427 151273452 -1263807 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 6 1739 635 221 21 49 chr5 151273586 151273729 -1263530 + B1_Mur1 SINE Alu 2 140 -9 6 1739 200 75 75 0 chr5 151273781 151273821 -1263438 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 6 1739 346 73 379 11 chr5 151274279 151274374 -1262885 - B2_Mm2 SINE B2 0 195 66 6 1739 1300 79 22 38 chr5 151274412 151274596 -1262663 - B2_Mm2 SINE B2 -14 181 1 6 1739 912 152 106 6 chr5 151274601 151274780 -1262479 - URR1A DNA MER1_type -28 198 2 6 1739 508 245 70 46 chr5 151274963 151275131 -1262128 - MTD LTR MaLR -5 414 202 6 1739 589 231 0 8 chr5 151275178 151275300 -1261959 + B1F SINE Alu 3 123 -26 6 1739 27 29 0 0 chr5 151275315 151275349 -1261910 + AT_rich Low_complexity Low_complexity 1 34 0 6 1739 2149 156 52 6 chr5 151275369 151275718 -1261541 - ORR1C1 LTR MaLR -13 365 1 6 1739 829 281 166 48 chr5 151275788 151276270 -1260989 - Lx9 LINE L1 -157 7487 6949 6 1739 487 194 25 183 chr5 151276270 151276316 -1260943 - L1_Rod LINE L1 -22 5825 5785 6 1739 3407 25 8 0 chr5 151276316 151276709 -1260550 + MTA_Mm LTR MaLR 1 396 0 6 1739 9301 31 6 1 chr5 151276709 151277802 -1259457 + MTA_Mm-int LTR MaLR 1 1098 0 6 1739 3396 25 8 0 chr5 151277802 151278195 -1259064 + MTA_Mm LTR MaLR 1 396 0 6 1739 1280 102 27 0 chr5 151278217 151278404 -1258855 - B2_Mm2 SINE B2 -3 192 1 6 1739 3251 204 40 85 chr5 151278409 151278535 -1258724 - L1_Rod LINE L1 -88 5759 5658 6 1739 2310 122 88 0 chr5 151278535 151278897 -1258362 + ORR1B1 LTR MaLR 1 394 0 6 1739 3251 204 40 85 chr5 151278897 151279728 -1257531 - L1_Rod LINE L1 -190 5657 4845 6 1739 326 287 61 0 chr5 151279753 151279868 -1257391 - L1_Rod LINE L1 -1156 4691 4570 6 1739 1242 222 16 32 chr5 151279837 151280171 -1257088 - L1_Rod LINE L1 -1828 4312 3947 6 1739 319 258 0 51 chr5 151280171 151280269 -1256990 - B3A SINE B2 -105 93 1 6 1739 361 188 119 0 chr5 151280282 151280383 -1256876 - PB1D10 SINE Alu 0 117 5 6 1739 402 74 0 0 chr5 151280701 151280755 -1256504 + (TG)n Simple_repeat Simple_repeat 2 55 0 6 1739 24 32 0 0 chr5 151281024 151281055 -1256204 + AT_rich Low_complexity Low_complexity 1 31 0 6 1739 240 214 0 0 chr5 151281499 151281611 -1255648 + (TG)n Simple_repeat Simple_repeat 2 113 0 6 1739 1405 88 0 10 chr5 151281834 151282030 -1255229 + B2_Mm2 SINE B2 2 195 0 6 1739 1458 236 84 11 chr5 151282057 151282438 -1254821 - MTD LTR MaLR -6 413 5 6 1739 210 351 0 0 chr5 151282796 151282853 -1254406 + MIRb SINE MIR 24 80 -188 6 1739 1448 89 11 0 chr5 151282861 151283052 -1254207 - B2_Mm1t SINE B2 0 193 1 6 1739 306 73 0 0 chr5 151283187 151283228 -1254031 + (CTG)n Simple_repeat Simple_repeat 2 42 0 6 1739 485 226 0 0 chr5 151283596 151283680 -1253579 - B1_Mur3 SINE Alu -63 86 3 6 1739 696 179 0 0 chr5 151283701 151283818 -1253441 + B3 SINE B2 3 119 -97 6 1739 180 0 0 0 chr5 151283835 151283855 -1253404 + (TG)n Simple_repeat Simple_repeat 2 21 0 6 1739 206 209 0 0 chr5 151285494 151285537 -1251722 + C-rich Low_complexity Low_complexity 1 43 0 6 1739 1033 114 0 20 chr5 151285673 151285825 -1251434 - B1_Mur4 SINE Alu 0 150 2 6 1739 681 189 15 15 chr5 151285994 151286128 -1251131 - B1_Mur2 SINE Alu -5 144 11 6 1739 207 214 0 67 chr5 151286523 151286583 -1250676 + (CA)n Simple_repeat Simple_repeat 1 56 0 6 1739 1715 174 61 25 chr5 151286838 151287232 -1250027 - MTD LTR MaLR 0 419 12 6 1739 189 94 0 0 chr5 151287232 151287264 -1249995 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 6 1739 368 260 0 0 chr5 151288608 151288685 -1248574 + ID4_ SINE ID 5 81 -2 6 1739 200 211 0 0 chr5 151288699 151288737 -1248522 + GA-rich Low_complexity Low_complexity 3 40 0 6 1739 237 139 0 0 chr5 151288851 151288894 -1248365 + (T)n Simple_repeat Simple_repeat 1 43 0 6 1739 1105 102 0 0 chr5 151288894 151289041 -1248218 - B1_Mus1 SINE Alu 0 148 2 6 1739 3395 55 0 0 chr5 151289099 151289499 -1247760 - MTB LTR MaLR 0 400 1 6 1739 282 296 0 58 chr5 151289550 151289636 -1247623 + B1_Mus2 SINE Alu 1 81 -66 6 1739 315 189 10 29 chr5 151289620 151289702 -1247557 - B1F SINE Alu -61 88 4 6 1739 1437 74 26 5 chr5 151289747 151289937 -1247322 - B2_Mm2 SINE B2 0 195 2 6 1739 362 291 10 0 chr5 151290380 151290483 -1246776 - PB1D10 SINE Alu -11 106 3 6 1739 34 0 0 0 chr5 151290704 151290738 -1246521 + AT_rich Low_complexity Low_complexity 1 34 0 6 1739 364 241 23 0 chr5 151290738 151290825 -1246434 + U13 snRNA snRNA 7 95 -13 6 1739 431 341 58 12 chr5 151290978 151291150 -1246109 + B3A SINE B2 1 180 -18 6 1739 252 86 0 0 chr5 151291944 151291979 -1245280 + (GA)n Simple_repeat Simple_repeat 2 36 0 6 1739 1020 128 7 0 chr5 151292217 151292366 -1244893 + B1_Mur4 SINE Alu 1 150 0 6 1739 306 146 0 35 chr5 151292538 151292595 -1244664 - B2_Mm2 SINE B2 -94 101 47 6 1739 1274 91 17 0 chr5 151292635 151292810 -1244449 - B2_Mm1t SINE B2 -14 179 2 6 1739 3826 146 52 21 chr5 151293869 151294540 -1242719 - RLTR17 LTR ERVK 0 692 1 6 1739 225 0 0 0 chr5 151294561 151294586 -1242673 + (A)n Simple_repeat Simple_repeat 1 25 0 6 1739 3504 180 36 45 chr5 151294586 151295435 -1241824 - RMER3D-int LTR ERVK -21 2821 1980 6 1739 4092 182 14 67 chr5 151295443 151296532 -1240727 - RMER3D-int LTR ERVK -990 1852 377 6 1739 415 191 43 51 chr5 151296541 151296679 -1240580 - RMER3D-int LTR ERVK -1692 1150 1014 6 1739 1207 242 108 38 chr5 151296746 151297118 -1240141 - RMER3D-int LTR ERVK -2365 477 70 6 1739 881 42 27 20 chr5 151297118 151297264 -1239995 + (GAGAA)n Simple_repeat Simple_repeat 4 150 0 6 1739 1207 242 108 38 chr5 151297264 151297337 -1239922 - RMER3D-int LTR ERVK -2773 69 1 6 1739 602 186 69 35 chr5 151297337 151297482 -1239777 - RLTR17 LTR ERVK 0 692 543 6 1739 294 95 0 0 chr5 151297934 151297976 -1239283 + (TG)n Simple_repeat Simple_repeat 2 43 0 6 1739 688 193 57 7 chr5 151298036 151298177 -1239082 - B1F1 SINE Alu 0 149 2 6 1739 510 304 22 0 chr5 151298528 151298666 -1238593 + B3 SINE B2 16 156 -60 6 1739 483 216 0 0 chr5 151299449 151299560 -1237699 + CT-rich Low_complexity Low_complexity 2 112 0 6 1739 524 210 91 102 chr5 151300508 151300647 -1236612 - B3 SINE B2 -32 184 40 6 1739 496 100 0 0 chr5 151300647 151300727 -1236532 - L1Md_F2 LINE L1 0 6582 6503 6 1739 524 210 91 102 chr5 151300727 151300773 -1236486 - B3 SINE B2 -177 39 1 6 1739 1370 103 5 5 chr5 151300782 151300977 -1236282 - B2_Mm2 SINE B2 0 195 1 6 1739 210 306 14 14 chr5 151301024 151301097 -1236162 - B3A SINE B2 -69 129 57 6 1739 1039 68 0 7 chr5 151301112 151301260 -1235999 + B1_Mus1 SINE Alu 2 148 0 6 1739 239 26 0 73 chr5 151301498 151301539 -1235720 + (T)n Simple_repeat Simple_repeat 1 38 0 6 1739 252 174 8 0 chr5 151301539 151301595 -1235664 - B1_Mus2 SINE Alu 0 149 91 7 1739 368 315 23 8 chr5 151301645 151301773 -1235486 + ID_B1 SINE B4 82 211 -13 7 1739 764 76 244 0 chr5 151301787 151301906 -1235353 - B1_Mus1 SINE Alu 0 148 1 7 1739 1172 141 95 47 chr5 151301949 151302202 -1235057 - RLTR19 LTR ERVK -232 267 3 7 1739 248 308 115 0 chr5 151302986 151303064 -1234195 + ID SINE ID 1 87 -137 7 1739 490 191 59 37 chr5 151303173 151303309 -1233950 - B1_Mur2 SINE Alu -10 139 1 7 1739 826 176 28 0 chr5 151303348 151303490 -1233769 + B1_Mus1 SINE Alu 1 146 -2 7 1739 225 0 0 0 chr5 151303503 151303528 -1233731 + (A)n Simple_repeat Simple_repeat 1 25 0 7 1739 648 204 57 21 chr5 151303605 151303745 -1233514 + B1_Mur2 SINE Alu 5 149 0 7 1739 250 225 183 53 chr5 151304160 151304329 -1232930 - MTE-int LTR MaLR -61 1519 1329 7 1739 681 296 105 30 chr5 151304911 151305337 -1231922 - MTE-int LTR MaLR -1192 543 41 7 1739 181 85 0 78 chr5 151305442 151305493 -1231766 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 7 1739 738 163 8 0 chr5 151305727 151305856 -1231403 + B1_Mur4 SINE Alu 21 150 0 7 1739 401 323 38 8 chr5 151305934 151306065 -1231194 + RSINE1 SINE B4 17 151 -14 7 1739 345 220 40 51 chr5 151306253 151306378 -1230881 - B1_Mur1 SINE Alu -1 148 4 7 1739 564 172 22 66 chr5 151306446 151306583 -1230676 + B1_Mur2 SINE Alu 19 149 0 7 1739 230 250 31 0 chr5 151306720 151306784 -1230475 - ID4 SINE ID -16 67 2 7 1739 652 234 43 0 chr5 151306956 151307097 -1230162 + B1F1 SINE Alu 3 149 0 7 1739 491 177 10 50 chr5 151307164 151307234 -1230025 - B3 SINE B2 -118 98 32 7 1739 4569 67 3 28 chr5 151307234 151307836 -1229423 - LTRIS_Mus LTR ERV1 0 587 1 7 1739 491 177 10 50 chr5 151307836 151307866 -1229393 - B3 SINE B2 -185 31 2 7 1739 267 337 22 0 chr5 151307875 151307967 -1229292 - B3A SINE B2 -104 94 1 7 1739 371 326 46 8 chr5 151308491 151308621 -1228638 + ID_B1 SINE B4 82 216 -8 7 1739 357 137 0 59 chr5 151308770 151308845 -1228414 + B1_Mur4 SINE Alu 17 88 -62 7 1739 1395 76 27 5 chr5 151308968 151309154 -1228105 - B2_Mm2 SINE B2 -4 191 2 7 1739 26 0 0 0 chr5 151309157 151309183 -1228076 + AT_rich Low_complexity Low_complexity 1 26 0 7 1739 586 147 248 0 chr5 151309243 151309352 -1227907 - B1_Mur4 SINE Alu -13 137 2 7 1739 269 256 0 85 chr5 151309357 151309451 -1227808 - PB1D9 SINE Alu -5 115 30 7 1739 207 264 0 19 chr5 151309847 151309901 -1227358 + C-rich Low_complexity Low_complexity 4 56 0 7 1739 228 261 169 28 chr5 151310251 151310393 -1226866 - RSINE1 SINE B4 -1 164 3 7 1739 696 150 0 46 chr5 151310782 151310939 -1226320 + CT-rich Low_complexity Low_complexity 21 170 0 7 1739 1379 54 32 11 chr5 151310939 151311126 -1226133 - B2_Mm2 SINE B2 -3 192 2 7 1739 696 150 0 46 chr5 151311126 151311143 -1226116 + polypyrimidine Low_complexity Low_complexity 4 20 0 7 1739 508 291 99 13 chr5 151311187 151311406 -1225853 + L1MEg LINE L1 481 721 -5363 7 1739 358 186 165 10 chr5 151311406 151311509 -1225750 + PB1D9 SINE Alu 1 119 -1 7 1739 508 291 99 13 chr5 151311509 151311522 -1225737 + L1MEg LINE L1 722 733 -5351 7 1739 401 301 26 0 chr5 151311558 151311671 -1225588 + B1F SINE Alu 31 146 -3 7 1739 225 115 57 19 chr5 151311726 151311779 -1225480 + T-rich Low_complexity Low_complexity 4 58 0 7 1739 315 236 51 102 chr5 151311780 151311898 -1225361 - PB1D9 SINE Alu 0 120 9 7 1739 216 0 0 0 chr5 151311942 151311966 -1225293 + (TA)n Simple_repeat Simple_repeat 1 24 0 7 1739 1186 45 0 0 chr5 151311967 151312121 -1225138 - B2_Mm2 SINE B2 -41 154 1 7 1739 442 172 23 108 chr5 151312520 151312650 -1224609 + MT2B LTR ERVL 146 264 -337 7 1739 1024 65 0 0 chr5 151312546 151312685 -1224574 + B1_Mus1 SINE Alu 10 148 0 7 1739 746 168 72 7 chr5 151312720 151312858 -1224401 + B1_Mus1 SINE Alu 2 148 0 7 1739 200 159 33 33 chr5 151312858 151312949 -1224310 + A-rich Low_complexity Low_complexity 5 95 0 7 1739 636 96 0 0 chr5 151312970 151313064 -1224195 + B2_Mm2 SINE B2 3 96 -99 7 1739 189 74 0 0 chr5 151313074 151313101 -1224158 + (A)n Simple_repeat Simple_repeat 1 27 0 7 1739 255 31 0 0 chr5 151313101 151313133 -1224126 + (TAA)n Simple_repeat Simple_repeat 2 33 0 7 1739 350 185 50 89 chr5 151313217 151313318 -1223941 + B1_Mur2 SINE Alu 47 143 -6 7 1739 841 211 48 43 chr5 151313366 151313574 -1223685 - B3 SINE B2 -6 210 2 7 1739 615 51 0 0 chr5 151313945 151314024 -1223235 + (TG)n Simple_repeat Simple_repeat 1 79 0 7 1739 302 0 26 0 chr5 151314026 151314064 -1223195 + (GA)n Simple_repeat Simple_repeat 2 40 0 7 1739 27 29 0 0 chr5 151314149 151314183 -1223076 + AT_rich Low_complexity Low_complexity 1 34 0 7 1739 221 283 17 0 chr5 151314186 151314246 -1223013 + ID4 SINE ID 10 70 -13 7 1739 25 0 0 0 chr5 151314269 151314294 -1222965 + AT_rich Low_complexity Low_complexity 1 25 0 7 1739 590 296 10 31 chr5 151314301 151314496 -1222763 - B3A SINE B2 -6 192 2 7 1739 1171 73 6 6 chr5 151315138 151315304 -1221955 + B2_Mm2 SINE B2 1 166 -29 7 1739 189 0 0 0 chr5 151315304 151315325 -1221934 + (GA)n Simple_repeat Simple_repeat 2 22 0 7 1739 708 225 70 0 chr5 151315637 151315824 -1221435 - B3 SINE B2 -15 201 2 7 1739 563 215 44 7 chr5 151315967 151316103 -1221156 - B3 SINE B2 -28 188 48 7 1739 663 188 15 15 chr5 151316462 151316597 -1220662 - B1_Mur1 SINE Alu -1 148 14 7 1739 850 137 0 0 chr5 151316619 151316765 -1220494 - URR1B DNA MER1_type 0 225 80 7 1739 360 0 0 0 chr5 151316842 151316882 -1220377 + (CA)n Simple_repeat Simple_repeat 2 41 0 7 1739 303 272 39 10 chr5 151317032 151317136 -1220123 - PB1D10 SINE Alu -6 111 5 7 1739 219 36 0 0 chr5 151317161 151317189 -1220070 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 7 1739 258 247 126 23 chr5 151317296 151317383 -1219876 + PB1D10 SINE Alu 1 96 -21 7 1739 523 228 0 0 chr5 151317647 151317761 -1219498 + B1F2 SINE Alu 29 142 -7 7 1739 529 216 35 0 chr5 151318035 151318151 -1219108 + PB1D9 SINE Alu 1 120 0 7 1739 26 0 0 0 chr5 151318302 151318328 -1218931 + AT_rich Low_complexity Low_complexity 1 26 0 7 1739 296 257 110 37 chr5 151318492 151318601 -1218658 - B1_Mur2 SINE Alu 0 149 33 7 1739 1732 168 63 129 chr5 151318625 151319098 -1218161 + RMER10A LTR ERVL 1 442 0 7 1739 240 301 106 24 chr5 151319102 151319187 -1218072 - PB1D10 SINE Alu -17 100 9 7 1739 1064 75 0 45 chr5 151319262 151319416 -1217843 + B1_Mm SINE Alu 1 147 0 7 1739 292 243 14 0 chr5 151321015 151321093 -1216166 + L1MA9 LINE L1 5527 5606 -685 7 1739 941 96 30 0 chr5 151321095 151321230 -1216029 + B1_Mus1 SINE Alu 2 140 -8 7 1739 36 23 0 0 chr5 151321241 151321284 -1215975 + AT_rich Low_complexity Low_complexity 1 43 0 7 1739 416 286 75 35 chr5 151321287 151321461 -1215798 + B3A SINE B2 2 182 -16 7 1739 1498 54 11 5 chr5 151321468 151321655 -1215604 - B2_Mm2 SINE B2 -6 189 2 7 1739 879 144 79 23 chr5 151321687 151321864 -1215395 - B2_Mm2 SINE B2 -7 188 2 7 1739 396 239 182 8 chr5 151321877 151322071 -1215188 + L1MA9 LINE L1 5601 5827 -473 7 1739 424 247 10 10 chr5 151322077 151322175 -1215084 + PB1D10 SINE Alu 7 104 -13 7 1739 436 152 74 32 chr5 151322203 151322298 -1214961 + L1MA9 LINE L1 5849 5947 -365 7 1739 675 215 39 11 chr5 151322397 151322576 -1214683 - RMER5 LTR ERV1 -11 523 340 7 1739 213 146 0 0 chr5 151322576 151322588 -1214671 + (A)n Simple_repeat Simple_repeat 1 12 0 7 1739 1232 34 7 0 chr5 151322588 151322735 -1214524 + B1_Mus1 SINE Alu 1 148 0 7 1739 213 146 0 0 chr5 151322735 151322763 -1214496 + (A)n Simple_repeat Simple_repeat 1 28 0 7 1739 724 279 74 74 chr5 151322819 151323016 -1214243 - RMER5 LTR ERV1 -191 343 143 7 1739 1215 61 0 0 chr5 151323016 151323164 -1214095 + B1_Mus1 SINE Alu 1 148 0 7 1739 724 279 74 74 chr5 151323164 151323291 -1213968 - RMER5 LTR ERV1 -392 142 19 7 1739 793 187 39 79 chr5 151323765 151323968 -1213291 - B2_Mm2 SINE B2 0 195 1 7 1739 661 140 0 27 chr5 151323972 151324082 -1213177 - PB1D9 SINE Alu -3 117 11 7 1739 276 100 0 0 chr5 151324730 151324770 -1212489 + (TG)n Simple_repeat Simple_repeat 1 40 0 7 1739 550 186 80 0 chr5 151325954 151326067 -1211192 + B1_Mur3 SINE Alu 27 148 -1 7 1739 325 248 56 19 chr5 151326111 151326218 -1211041 + B1F1 SINE Alu 39 149 0 7 1739 341 267 50 0 chr5 151326247 151326348 -1210911 + ID_B1 SINE B4 53 158 -66 7 1739 833 188 27 49 chr5 151326568 151326753 -1210506 - B3A SINE B2 -16 182 2 7 1739 395 289 116 0 chr5 151326771 151326892 -1210367 - B1F2 SINE Alu -14 135 1 7 1739 418 210 174 16 chr5 151326931 151327115 -1210144 - Charlie1a DNA MER1_type -706 749 537 7 1739 320 250 90 35 chr5 151327401 151327546 -1209713 - Charlie1a DNA MER1_type -1237 218 66 7 1739 1402 82 39 0 chr5 151327905 151328087 -1209172 - B2_Mm2 SINE B2 -6 189 1 7 1739 280 271 0 0 chr5 151328099 151328184 -1209075 + T-rich Low_complexity Low_complexity 1 85 0 7 1739 546 162 19 19 chr5 151328231 151328338 -1208921 - B1_Mur3 SINE Alu 0 149 43 7 1739 258 247 0 0 chr5 151328353 151328430 -1208829 + CT-rich Low_complexity Low_complexity 1 77 0 7 1739 292 289 47 24 chr5 151328450 151328535 -1208724 - PB1D10 SINE Alu -7 110 24 7 1739 1364 90 11 0 chr5 151328587 151328776 -1208483 - B2_Mm1t SINE B2 -1 192 2 7 1739 263 311 14 0 chr5 151328793 151328807 -1208452 - ID_B1 SINE B4 -68 156 86 7 1739 270 250 18 0 chr5 151328807 151328863 -1208396 - B1F1 SINE Alu -88 61 5 7 1739 421 252 107 0 chr5 151328959 151329062 -1208197 - RSINE1 SINE B4 -43 122 9 7 1739 1178 36 0 0 chr5 151329131 151329269 -1207990 + B1_Mus1 SINE Alu 1 138 -10 8 1739 180 0 0 0 chr5 151329269 151329289 -1207970 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8 1739 2991 23 6 3 chr5 151329428 151329773 -1207486 + ORR1A0 LTR MaLR 1 346 0 8 1739 13834 52 29 1 chr5 151329773 151331515 -1205744 + ORR1A0-int LTR MaLR 1 1792 0 8 1739 3045 20 3 3 chr5 151331515 151331861 -1205398 + ORR1A0 LTR MaLR 1 346 0 8 1739 804 189 7 20 chr5 151332278 151332429 -1204830 + B1_Mur2 SINE Alu 1 149 0 8 1739 796 155 39 0 chr5 151333024 151333153 -1204106 + B1_Mur2 SINE Alu 10 143 -6 8 1739 330 272 39 10 chr5 151333804 151333908 -1203351 - PB1D10 SINE Alu -1 116 10 8 1739 796 210 68 34 chr5 151334353 151334560 -1202699 - B3 SINE B2 -1 215 2 8 1739 1141 209 19 0 chr5 151335068 151335279 -1201980 + B3 SINE B2 2 216 0 8 1739 206 169 0 78 chr5 151335352 151335396 -1201863 + T-rich Low_complexity Low_complexity 18 59 0 8 1739 1136 78 0 0 chr5 151335396 151335538 -1201721 - B1_Mus1 SINE Alu -5 143 2 8 1739 206 169 0 78 chr5 151335538 151335557 -1201702 + T-rich Low_complexity Low_complexity 1 17 0 8 1739 726 247 6 24 chr5 151335769 151335935 -1201324 - RSINE1 SINE B4 0 165 3 8 1739 1167 106 76 27 chr5 151336014 151336199 -1201060 - B2_Mm2 SINE B2 -1 194 1 8 1739 877 164 9 117 chr5 151336409 151336583 -1200676 + B2_Mm2 SINE B2 3 167 -28 8 1739 1047 75 0 88 chr5 151336583 151336743 -1200516 + B1_Mus2 SINE Alu 2 147 0 8 1739 877 164 9 117 chr5 151336743 151336782 -1200477 + B2_Mm2 SINE B2 168 193 -2 8 1739 1644 42 0 0 chr5 151336786 151336978 -1200281 + B2_Mm1t SINE B2 1 192 -1 8 1739 243 0 0 0 chr5 151337052 151337079 -1200180 + (TG)n Simple_repeat Simple_repeat 2 28 0 8 1739 746 219 96 44 chr5 151337343 151337572 -1199687 - Lx8 LINE L1 -24 7449 7209 8 1739 785 20 0 0 chr5 151337572 151337674 -1199585 - B1_Mus2 SINE Alu -45 102 1 8 1739 304 297 41 48 chr5 151337679 151337824 -1199435 - B1_Mus1 SINE Alu 0 148 5 8 1739 369 0 0 0 chr5 151339846 151339887 -1197372 + (GTTTG)n Simple_repeat Simple_repeat 4 44 0 8 1739 539 161 107 0 chr5 151339892 151340004 -1197255 - B1_Mus1 SINE Alu -24 124 1 8 1739 520 276 75 56 chr5 151340151 151340312 -1196947 - RSINE1 SINE B4 0 165 2 8 1739 319 311 44 0 chr5 151340321 151340411 -1196848 - PB1 SINE Alu -33 94 1 8 1739 436 185 0 36 chr5 151340519 151340603 -1196656 + PB1 SINE Alu 36 116 -11 8 1739 1101 50 71 0 chr5 151340976 151341116 -1196143 - B1_Mur4 SINE Alu 0 150 1 8 1739 180 266 125 12 chr5 151346407 151346487 -1190772 + MIRb SINE MIR 106 194 -74 8 1739 458 186 14 9 chr5 151346498 151346607 -1190652 + PB1D10 SINE Alu 4 115 -5 8 1739 563 332 48 11 chr5 151346780 151346966 -1190293 - B3 SINE B2 -11 205 13 8 1739 231 61 0 0 chr5 151348024 151348057 -1189202 + (T)n Simple_repeat Simple_repeat 1 33 0 8 1739 1088 77 154 6 chr5 151348061 151348230 -1189029 - B2_Mm2 SINE B2 0 195 2 8 1739 351 0 0 0 chr5 151348243 151348282 -1188977 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 8 1739 1228 41 0 0 chr5 151348282 151348427 -1188832 - B1_Mm SINE Alu -2 145 1 8 1739 875 176 7 0 chr5 151348439 151348581 -1188678 - B1_Mur4 SINE Alu -7 143 1 8 1739 273 290 132 28 chr5 151348763 151348976 -1188283 - Charlie1a DNA MER1_type -673 782 548 8 1739 460 271 44 25 chr5 151348982 151349141 -1188118 + RSINE1 SINE B4 4 165 0 8 1739 1142 75 0 7 chr5 151349557 151349704 -1187555 + B1_Mus2 SINE Alu 2 147 0 8 1739 816 201 0 0 chr5 151349884 151350028 -1187231 - U4 snRNA snRNA -1 144 1 8 1739 256 345 0 0 chr5 151350060 151350144 -1187115 - L1MC LINE L1 -2055 5827 5744 8 1739 534 91 0 0 chr5 151350932 151351009 -1186250 + (CA)n Simple_repeat Simple_repeat 2 78 0 8 1739 258 125 0 0 chr5 151351481 151351529 -1185730 + (T)n Simple_repeat Simple_repeat 1 48 0 8 1739 451 311 79 7 chr5 151351555 151351707 -1185552 - RSINE1 SINE B4 -2 163 1 8 1739 1271 148 31 44 chr5 151351730 151351956 -1185303 - URR1B DNA MER1_type -1 224 2 8 1739 1325 87 11 5 chr5 151352030 151352215 -1185044 - B2_Mm2 SINE B2 -8 187 2 8 1739 864 300 68 29 chr5 151352338 151352619 -1184640 + B4A SINE B4 1 292 0 8 1739 552 209 9 9 chr5 151352661 151352777 -1184482 + PB1D10 SINE Alu 2 117 0 8 1739 747 82 54 54 chr5 151353102 151353231 -1184028 - B1_Mur3 SINE Alu -17 132 4 8 1739 473 168 18 36 chr5 151353254 151353365 -1183894 - PB1D7 SINE Alu -2 118 10 8 1739 252 227 191 56 chr5 151353365 151353380 -1183879 - B4 SINE B4 -69 223 81 8 1739 224 270 117 61 chr5 151353963 151354160 -1183099 - MIR SINE MIR -24 238 31 8 1739 337 242 63 0 chr5 151354287 151354382 -1182877 - U6 snRNA snRNA -6 101 1 8 1739 201 133 0 0 chr5 151354553 151354583 -1182676 + (TG)n Simple_repeat Simple_repeat 1 30 0 8 1739 23 0 0 0 chr5 151355288 151355311 -1181948 + AT_rich Low_complexity Low_complexity 1 23 0 8 1739 1785 163 22 16 chr5 151355788 151356100 -1181159 - Lx5 LINE L1 -57 6993 6680 8 1739 846 172 14 7 chr5 151356150 151356296 -1180963 - B1_Mus2 SINE Alu 0 147 1 8 1739 520 312 37 48 chr5 151356336 151356605 -1180654 - B4A SINE B4 0 292 27 8 1739 491 262 27 33 chr5 151357332 151357482 -1179777 - B4 SINE B4 -143 149 1 8 1739 203 250 0 0 chr5 151357536 151357580 -1179679 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1739 936 174 80 20 chr5 151357763 151357962 -1179297 - B3 SINE B2 -5 211 1 8 1739 450 0 0 0 chr5 151357966 151358016 -1179243 + (CA)n Simple_repeat Simple_repeat 2 51 0 8 1739 534 88 38 0 chr5 151358038 151358118 -1179141 - B2_Mm2 SINE B2 -14 181 99 8 1739 1126 78 131 6 chr5 151358189 151358210 -1179049 - B2_Mm2 SINE B2 -6 189 169 8 1739 1373 71 33 0 chr5 151358210 151358392 -1178867 + B2_Mm1t SINE B2 2 189 -4 8 1739 1126 78 131 6 chr5 151358392 151358538 -1178721 - B2_Mm2 SINE B2 -27 168 1 8 1739 569 193 0 18 chr5 151358617 151358728 -1178531 - B1_Mur4 SINE Alu -40 110 2 8 1739 216 0 0 0 chr5 151358765 151358789 -1178470 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 8 1739 3210 63 39 5 chr5 151358999 151359411 -1177848 - L1Md_F2 LINE L1 -12 6570 6145 8 1739 1148 82 0 0 chr5 151359862 151360009 -1177250 - B1_Mus1 SINE Alu 0 148 2 8 1739 1005 45 0 0 chr5 151360143 151360277 -1176982 + B1_Mm SINE Alu 14 147 0 8 1739 305 233 178 17 chr5 151360297 151360415 -1176844 + B3A SINE B2 40 176 -22 8 1739 198 103 0 0 chr5 151360630 151360659 -1176600 + (TTC)n Simple_repeat Simple_repeat 2 30 0 8 1739 394 308 53 8 chr5 151360711 151360842 -1176417 - RSINE1 SINE B4 -22 143 7 8 1739 487 260 24 0 chr5 151361288 151361415 -1175844 + RSINE1 SINE B4 3 132 -33 8 1739 912 168 0 14 chr5 151361439 151361584 -1175675 - B1_Mur3 SINE Alu -4 145 3 8 1739 195 114 0 0 chr5 151361589 151361624 -1175635 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 8 1739 339 269 140 0 chr5 151361746 151361839 -1175420 + B3A SINE B2 5 110 -88 8 1739 634 184 9 9 chr5 151361943 151362058 -1175201 + B3 SINE B2 15 129 -87 8 1739 207 312 11 11 chr5 151362187 151362281 -1174978 + MIR SINE MIR 98 191 -71 8 1739 563 136 13 22 chr5 151363514 151363627 -1173632 + B1_Mus1 SINE Alu 2 120 0 8 1739 889 67 73 15 chr5 151363645 151363782 -1173477 - B2_Mm1a SINE B2 -14 179 35 8 1739 4193 123 68 41 chr5 151364472 151365208 -1172051 - RMER6A LTR ERVK 0 756 1 8 1739 1121 37 0 7 chr5 151365931 151366066 -1171193 + B1_Mm SINE Alu 2 135 -12 8 1739 215 135 0 55 chr5 151366076 151366131 -1171128 + A-rich Low_complexity Low_complexity 1 52 0 8 1739 231 176 39 19 chr5 151366192 151366244 -1171015 + CT-rich Low_complexity Low_complexity 3 55 0 8 1739 465 281 7 69 chr5 151366752 151366897 -1170362 - RSINE1 SINE B4 -28 137 2 8 1739 421 351 80 11 chr5 151366899 151367161 -1170098 - L2 LINE L2 -525 2894 2615 8 1739 231 61 0 0 chr5 151367576 151367609 -1169650 + (GA)n Simple_repeat Simple_repeat 1 33 0 8 1739 1319 183 3 101 chr5 151367616 151367858 -1169401 - RMER6C LTR ERVK -90 600 373 8 1739 333 0 0 0 chr5 151367858 151367895 -1169364 + (CA)n Simple_repeat Simple_repeat 1 37 0 8 1739 1319 183 3 101 chr5 151367895 151368028 -1169231 - RMER6C LTR ERVK -318 372 262 8 1739 196 342 68 51 chr5 151368218 151368335 -1168924 - L2 LINE L2 -1816 1603 1485 8 1739 234 296 51 0 chr5 151368457 151368555 -1168704 - L1MC4a LINE L1 -978 6904 6802 8 1739 847 158 0 0 chr5 151368604 151368743 -1168516 + B1_Mur3 SINE Alu 11 149 0 8 1739 320 268 0 79 chr5 151370821 151370910 -1166349 + RSINE1 SINE B4 84 165 0 8 1739 252 0 0 0 chr5 151371130 151371158 -1166101 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1739 1102 43 65 0 chr5 151371158 151371296 -1165963 - B1_Mm SINE Alu 0 147 1 8 1739 288 280 140 0 chr5 151372555 151372648 -1164611 + B1F2 SINE Alu 1 106 -43 8 1739 275 307 129 0 chr5 151372558 151372659 -1164600 + ID_B1 SINE B4 85 198 -26 8 1739 991 110 21 0 chr5 151372869 151373014 -1164245 - B1_Mus1 SINE Alu 0 148 1 8 1739 665 130 19 0 chr5 151378267 151378375 -1158884 + B1_Mur2 SINE Alu 40 149 0 8 1739 854 125 18 23 chr5 151378375 151378598 -1158661 + GA-rich Low_complexity Low_complexity 1 221 0 8 1739 557 246 23 8 chr5 151380862 151380993 -1156266 - B3A SINE B2 -5 193 61 8 1739 181 279 193 6 chr5 151381424 151381590 -1155669 + L3 LINE CR1 4009 4205 -284 8 1739 28 29 0 0 chr5 151383605 151383640 -1153619 + AT_rich Low_complexity Low_complexity 1 35 0 9 1739 208 143 0 0 chr5 151383723 151383769 -1153490 + (TC)n Simple_repeat Simple_repeat 1 46 0 9 1739 340 227 227 0 chr5 151384154 151384229 -1153030 - PB1D10 SINE Alu -23 94 3 9 1739 469 268 0 24 chr5 151384254 151384380 -1152879 - B1F SINE Alu -22 127 5 9 1739 435 252 9 9 chr5 151384669 151384781 -1152478 - RSINE1 SINE B4 -31 134 23 9 1739 486 239 18 0 chr5 151384825 151384934 -1152325 - PB1D9 SINE Alu -7 113 3 9 1739 288 386 14 0 chr5 151385813 151385953 -1151306 - MIRb SINE MIR -78 190 49 9 1739 983 177 57 0 chr5 151386264 151386456 -1150803 - B3 SINE B2 -13 203 1 9 1739 387 60 0 0 chr5 151386870 151386920 -1150339 + (CA)n Simple_repeat Simple_repeat 2 51 0 9 1739 1195 70 0 17 chr5 151387537 151387712 -1149547 + B2_Mm2 SINE B2 1 172 -23 9 1739 201 330 30 30 chr5 151387990 151388090 -1149169 + L2a LINE L2 3292 3391 -35 9 217 921 162 198 16 chr5 151388153 151388335 -1148924 - B3 SINE B2 0 216 2 9 1740 1138 95 64 12 chr5 151389394 151389565 -1147694 + B2_Mm2 SINE B2 2 181 -14 9 1740 308 275 200 39 chr5 151389565 151389581 -1147678 - ID_B1 SINE B4 -72 220 167 9 1740 506 196 0 20 chr5 151389581 151389680 -1147579 - PB1D7 SINE Alu -6 114 18 9 1740 308 275 200 39 chr5 151389680 151389704 -1147555 - ID_B1 SINE B4 -72 166 74 9 1740 1094 210 15 0 chr5 151390021 151390226 -1147033 + B3 SINE B2 1 208 -8 9 1740 1200 115 60 0 chr5 151390692 151390875 -1146384 + B2_Mm2 SINE B2 2 195 0 9 1740 261 224 85 50 chr5 151391860 151392001 -1145258 + L1MA6 LINE L1 5778 5923 -377 9 1740 334 89 0 43 chr5 151392076 151392146 -1145113 + (GGGTG)n Simple_repeat Simple_repeat 5 71 0 9 1740 216 245 0 0 chr5 151392265 151392314 -1144945 + (CACG)n Simple_repeat Simple_repeat 2 50 0 9 1740 384 326 0 29 chr5 151392380 151392519 -1144740 - RSINE1 SINE B4 -29 136 2 9 1740 448 110 0 76 chr5 151393220 151393283 -1143976 + B1_Mm SINE Alu 70 132 -15 9 1740 727 241 63 16 chr5 151393283 151393473 -1143786 + B3 SINE B2 5 203 -13 9 1740 448 110 0 76 chr5 151393473 151393488 -1143771 + B1_Mm SINE Alu 133 142 -5 9 1740 622 198 0 16 chr5 151393705 151393828 -1143431 - ID_B1 SINE B4 -1 223 103 9 1740 288 0 0 0 chr5 151393873 151393905 -1143354 + (TG)n Simple_repeat Simple_repeat 2 33 0 9 1740 384 123 284 0 chr5 151398406 151398487 -1138772 + U6 snRNA snRNA 3 106 -1 9 1740 279 62 14 72 chr5 151398598 151398667 -1138592 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 9 1740 740 224 126 35 chr5 151398685 151398939 -1138320 + B4A SINE B4 2 278 -14 9 1740 428 187 0 0 chr5 151399010 151399085 -1138174 + B3A SINE B2 50 124 -74 9 1740 222 91 0 0 chr5 151399571 151399604 -1137655 + (CA)n Simple_repeat Simple_repeat 2 34 0 9 1740 855 195 0 13 chr5 151399626 151399777 -1137482 + B1_Mur3 SINE Alu 1 149 0 9 1740 289 278 121 11 chr5 151400853 151400944 -1136315 + PB1 SINE Alu 26 126 -1 9 1740 237 257 56 14 chr5 151401189 151401260 -1135999 + HAL1 LINE L1 11 84 -2423 9 1740 632 249 59 32 chr5 151402301 151402488 -1134771 + B3A SINE B2 1 192 -6 9 1740 198 222 73 30 chr5 151403297 151403390 -1133869 - MIRm SINE MIR -94 174 82 9 1740 396 0 0 0 chr5 151404384 151404428 -1132831 + (TG)n Simple_repeat Simple_repeat 2 45 0 9 1740 232 354 26 0 chr5 151404953 151405066 -1132193 + PB1D7 SINE Alu 5 120 0 9 1740 1188 61 0 0 chr5 151405400 151405547 -1131712 + B1_Mus1 SINE Alu 2 148 0 9 1740 1169 56 7 0 chr5 151405867 151406011 -1131248 + B1_Mus1 SINE Alu 4 148 0 9 1740 222 266 47 0 chr5 151406049 151406113 -1131146 + B3A SINE B2 9 75 -123 9 1740 532 167 43 17 chr5 151406593 151406709 -1130550 + B3A SINE B2 80 198 0 9 1740 581 120 0 0 chr5 151407662 151407754 -1129505 + B1_Mur1 SINE Alu 43 134 -15 9 1740 945 212 91 5 chr5 151408544 151408743 -1128516 + B3 SINE B2 1 216 0 9 1740 753 244 17 0 chr5 151408751 151408923 -1128336 - B3 SINE B2 -37 179 5 9 1740 800 209 0 20 chr5 151409107 151409258 -1128001 - B1_Mur3 SINE Alu 0 149 2 9 1740 248 305 0 0 chr5 151411803 151411862 -1125397 - RMER30 DNA MER1_type 0 202 144 9 1740 966 248 40 0 chr5 151412137 151412339 -1124920 + B3 SINE B2 1 210 -6 9 1740 438 20 0 0 chr5 151412447 151412498 -1124761 + (TC)n Simple_repeat Simple_repeat 1 51 0 9 1740 846 251 50 34 chr5 151412543 151412782 -1124477 - B4A SINE B4 -15 277 35 9 1740 852 26 18 0 chr5 151412777 151412891 -1124368 + B1_Mus1 SINE Alu 33 148 0 9 1740 339 137 0 0 chr5 151412891 151412964 -1124295 + (A)n Simple_repeat Simple_repeat 1 73 0 9 1740 564 219 79 0 chr5 151413451 151413565 -1123694 - B1_Mur1 SINE Alu -18 131 9 9 1740 2171 151 39 31 chr5 151413576 151413992 -1123267 + MTC LTR MaLR 3 421 0 9 1740 496 159 0 70 chr5 151413999 151414114 -1123145 - B1_Mus1 SINE Alu -6 142 36 9 1740 189 0 0 0 chr5 151414499 151414520 -1122739 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 9 1740 218 56 28 0 chr5 151415010 151415046 -1122213 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 9 1740 1144 52 0 0 chr5 151415046 151415180 -1122079 - B1_Mus1 SINE Alu -13 135 2 9 1740 276 362 18 24 chr5 151415267 151415431 -1121828 + Tigger13a DNA MER2_type 89 251 -520 9 1740 3256 76 20 0 chr5 151415443 151415892 -1121367 + L1_Mus3 LINE L1 6181 6638 0 9 1740 611 240 14 7 chr5 151416680 151416827 -1120432 - B1_Mur1 SINE Alu -1 148 1 9 1740 355 265 72 22 chr5 151416994 151417133 -1120126 + L1M4 LINE L1 609 754 -5788 9 1740 427 266 185 0 chr5 151417223 151417407 -1119852 + ID_B1 SINE B4 3 220 -4 9 1740 528 122 61 0 chr5 151417527 151417609 -1119650 + B1_Mus2 SINE Alu 49 135 -12 9 1740 1370 99 21 0 chr5 151417684 151417875 -1119384 + B2_Mm2 SINE B2 1 195 0 9 1740 234 208 0 0 chr5 151417961 151418014 -1119245 + CT-rich Low_complexity Low_complexity 3 55 0 9 1740 5942 157 71 13 chr5 151418682 151419976 -1117283 + Lx6 LINE L1 4782 6168 -1528 9 1740 234 0 0 0 chr5 151419976 151420002 -1117257 + (CA)n Simple_repeat Simple_repeat 2 27 0 9 1740 5067 221 95 11 chr5 151420002 151421036 -1116223 + Lx6 LINE L1 6161 7290 -170 9 1740 363 165 50 99 chr5 151423096 151423217 -1114042 - PB1D10 SINE Alu -1 116 2 9 1740 836 269 24 5 chr5 151424020 151424229 -1113030 - ID_B1 SINE B4 0 224 12 9 1740 376 333 179 21 chr5 151424572 151424848 -1112411 + L2a LINE L2 2338 2681 -738 9 1740 575 287 114 48 chr5 151424848 151425119 -1112140 - B4A SINE B4 -2 290 2 9 1740 376 333 179 21 chr5 151425119 151425424 -1111835 + L2a LINE L2 2682 3010 -409 9 1740 192 299 91 0 chr5 151425645 151425722 -1111537 + L2a LINE L2 3322 3405 -21 9 1740 330 262 165 0 chr5 151426076 151426179 -1111080 + B1F SINE Alu 1 120 -29 9 1740 468 254 63 0 chr5 151426490 151426616 -1110643 + ID_B1 SINE B4 84 217 -7 9 1740 613 122 38 15 chr5 151426619 151426752 -1110507 + GA-rich Low_complexity Low_complexity 1 136 0 9 1740 211 198 132 55 chr5 151426756 151426847 -1110412 + B2_Mm2 SINE B2 1 98 -97 9 1740 1294 82 55 6 chr5 151427000 151427183 -1110076 + B2_Mm2 SINE B2 1 192 -3 9 1740 264 210 62 31 chr5 151427473 151427537 -1109722 + ID4_ SINE ID 4 69 -14 9 1740 232 385 11 0 chr5 151427738 151427829 -1109430 - ID_B1 SINE B4 -48 176 85 9 1740 1388 40 79 11 chr5 151427962 151428139 -1109120 + B2_Mm1a SINE B2 3 191 -2 9 1740 882 239 33 28 chr5 151428836 151429051 -1108208 + B3 SINE B2 1 216 0 9 1740 1160 120 68 6 chr5 151429693 151429869 -1107390 - B2_Mm2 SINE B2 -6 189 3 9 1740 2568 242 242 36 chr5 151429886 151431193 -1106066 - Tigger1 DNA MER2_type -168 2250 659 9 1740 1147 75 0 0 chr5 151431193 151431339 -1105920 + B1_Mm SINE Alu 2 147 0 9 1740 2568 242 242 36 chr5 151431339 151431414 -1105845 - Tigger1 DNA MER2_type -1760 658 583 9 1740 326 292 123 14 chr5 151431484 151431630 -1105629 - RSINE1 SINE B4 0 165 4 9 1740 467 244 131 116 chr5 151431814 151432013 -1105246 + B4 SINE B4 2 203 -89 9 1740 643 249 186 19 chr5 151432154 151432412 -1104847 - MLT1-int LTR MaLR -55 1316 1016 9 1740 511 244 226 6 chr5 151432434 151432611 -1104648 - ID_B1 SINE B4 -7 217 2 9 1740 945 189 88 51 chr5 151432905 151433122 -1104137 - URR1B DNA MER1_type 0 225 1 9 1740 398 269 21 0 chr5 151433515 151433608 -1103651 + B1_Mur1 SINE Alu 27 121 -28 9 1740 521 310 0 0 chr5 151434153 151434298 -1102961 - B3A SINE B2 -35 163 19 9 1740 315 317 58 102 chr5 151434309 151434372 -1102887 - RSINE1 SINE B4 -20 145 92 9 1740 1379 94 5 10 chr5 151434372 151434565 -1102694 - B2_Mm1a SINE B2 0 193 2 9 1740 315 317 58 102 chr5 151434565 151434638 -1102621 - RSINE1 SINE B4 -74 91 15 9 1740 827 164 0 0 chr5 151434669 151434809 -1102450 - B1_Mur3 SINE Alu -1 148 9 9 1740 2192 92 6 0 chr5 151435208 151435525 -1101734 - ORR1A2 LTR MaLR -8 319 1 9 1740 696 237 78 14 chr5 151435857 151436075 -1101184 + RMER12 LTR ERVK 10 241 -1081 9 1740 844 106 0 0 chr5 151436100 151436223 -1101036 - B1_Mus1 SINE Alu -24 124 2 9 1740 3155 216 240 28 chr5 151436223 151437103 -1100156 + RLTR22_Mur LTR ERVK 225 1323 -525 9 1740 291 54 0 0 chr5 151437103 151437140 -1100119 + (TG)n Simple_repeat Simple_repeat 2 38 0 9 1740 3155 216 240 28 chr5 151437140 151437567 -1099692 + RLTR22_Mur LTR ERVK 1324 1809 -39 9 1740 408 20 0 0 chr5 151438016 151438065 -1099194 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 9 1740 23 0 0 0 chr5 151438255 151438278 -1098981 + AT_rich Low_complexity Low_complexity 1 23 0 9 1740 22 35 0 0 chr5 151438676 151438705 -1098554 + AT_rich Low_complexity Low_complexity 1 29 0 9 1740 842 72 8 23 chr5 151440096 151440225 -1097034 + B1_Mus1 SINE Alu 22 148 0 1 1740 352 257 86 60 chr5 151440583 151440699 -1096560 + ID_B1 SINE B4 90 208 -16 1 1740 901 63 0 16 chr5 151440775 151440903 -1096356 + B1_Mus2 SINE Alu 2 127 -20 1 1740 307 215 30 15 chr5 151440912 151440978 -1096281 + RSINE1 SINE B4 14 80 -85 1 1740 605 214 57 19 chr5 151441369 151441526 -1095733 + B3 SINE B2 48 210 -6 1 1740 24 0 0 0 chr5 151441573 151441597 -1095662 + AT_rich Low_complexity Low_complexity 1 24 0 1 1740 452 213 158 39 chr5 151441757 151441884 -1095375 - B1_Mur2 SINE Alu -5 144 3 1 1740 1133 87 120 11 chr5 151443088 151443263 -1093996 + B2_Mm2 SINE B2 2 195 0 1 1740 596 135 26 35 chr5 151443299 151443414 -1093845 - B1_Mur2 SINE Alu 0 149 36 1 1740 29 0 0 0 chr5 151443544 151443573 -1093686 + AT_rich Low_complexity Low_complexity 1 29 0 1 1740 327 268 12 24 chr5 151443573 151443589 -1093670 + B4 SINE B4 70 84 -208 1 1740 643 206 70 49 chr5 151443589 151443732 -1093527 + B1_Mus2 SINE Alu 1 146 -1 1 1740 567 264 101 19 chr5 151443797 151443955 -1093304 - B3A SINE B2 -20 178 8 1 1740 192 77 0 0 chr5 151445901 151445927 -1091332 + (A)n Simple_repeat Simple_repeat 1 26 0 1 1740 1347 87 60 0 chr5 151446071 151446255 -1091004 - B2_Mm2 SINE B2 0 195 1 1 1740 265 194 148 30 chr5 151446357 151446458 -1090801 + Lx7 LINE L1 7565 7677 -19 1 1740 784 66 223 0 chr5 151446493 151446614 -1090645 - B1_Mus1 SINE Alu 0 148 1 1 1740 21 82 0 0 chr5 151446718 151446767 -1090492 + AT_rich Low_complexity Low_complexity 1 49 0 1 1740 210 37 0 0 chr5 151446822 151446849 -1090410 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 1 1740 499 176 236 63 chr5 151446852 151446979 -1090280 - B1_Mur2 SINE Alu 0 149 1 1 1740 242 268 0 0 chr5 151447284 151447340 -1089919 - B1F SINE Alu -93 56 1 1 1740 619 88 254 42 chr5 151447551 151447669 -1089590 - B1_Mus2 SINE Alu -2 145 3 1 1740 221 316 26 13 chr5 151447719 151447796 -1089463 + ID2 SINE ID 1 78 -5 1 1740 350 271 112 0 chr5 151447953 151448060 -1089199 + PB1D9 SINE Alu 2 120 0 1 1740 1001 122 0 0 chr5 151448079 151448227 -1089032 + B1_Mus1 SINE Alu 1 148 0 1 1740 213 121 0 0 chr5 151448227 151448260 -1088999 + (A)n Simple_repeat Simple_repeat 1 33 0 1 1740 458 195 0 0 chr5 151448684 151448771 -1088488 + L1MB8 LINE L1 6083 6169 -9 1 1740 237 328 57 52 chr5 151449046 151449239 -1088020 + MER46C DNA MER2_type 141 334 -4 1 1740 28 29 0 0 chr5 151450744 151450779 -1086480 + AT_rich Low_complexity Low_complexity 1 35 0 1 1740 1089 68 0 46 chr5 151450779 151450932 -1086327 - B1_Mus2 SINE Alu 0 147 2 1 1740 1573 47 11 0 chr5 151451227 151451418 -1085841 + B2_Mm1t SINE B2 1 193 0 1 1740 706 261 27 32 chr5 151451497 151451610 -1085649 - RMER30 DNA MER1_type -2 200 93 1 1740 216 0 0 0 chr5 151451610 151451634 -1085625 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1 1740 706 261 27 32 chr5 151451634 151451706 -1085553 - RMER30 DNA MER1_type -110 92 16 1 1740 790 315 70 26 chr5 151451735 151452048 -1085211 + ORR1E LTR MaLR 33 359 0 1 1740 482 188 8 152 chr5 151452221 151452353 -1084906 + B3 SINE B2 2 114 -102 1 1740 674 200 89 0 chr5 151452426 151452561 -1084698 + B1_Mus1 SINE Alu 2 148 0 1 1740 21 0 0 0 chr5 151452562 151452583 -1084676 + AT_rich Low_complexity Low_complexity 1 21 0 1 1740 236 286 21 131 chr5 151452583 151452728 -1084531 + MER5B DNA MER1_type 47 175 -3 1 1740 193 339 192 6 chr5 151452967 151453139 -1084120 - MIRc SINE MIR -15 253 50 1 1740 1639 42 0 0 chr5 151453617 151453810 -1083449 + B2_Mm1t SINE B2 1 193 0 1 1740 680 298 115 5 chr5 151454371 151454580 -1082679 - MER2 DNA MER2_type -1 344 113 1 1740 1262 103 33 0 chr5 151454930 151455114 -1082145 + B2_Mm1t SINE B2 3 192 -1 1 1740 198 0 0 0 chr5 151455261 151455283 -1081976 + (T)n Simple_repeat Simple_repeat 1 22 0 1 1740 1294 47 94 0 chr5 151455347 151455517 -1081742 + B2_Mm1t SINE B2 2 187 -6 1 1740 900 230 96 0 chr5 151455548 151455735 -1081524 + B3 SINE B2 2 206 -10 1 1740 1376 71 27 0 chr5 151456499 151456683 -1080576 + B2_Mm2 SINE B2 2 190 -5 1 1740 251 250 24 132 chr5 151456843 151456926 -1080333 + B1F1 SINE Alu 46 119 -30 1 1740 1363 77 16 0 chr5 151456984 151457167 -1080092 + B2_Mm2 SINE B2 2 187 -8 1 1740 506 117 339 32 chr5 151457167 151457291 -1079968 - URR1A DNA MER1_type -64 162 1 1 1740 294 240 185 49 chr5 151457660 151457822 -1079437 - MLT1D LTR MaLR -247 258 75 1 1740 270 267 22 55 chr5 151457974 151457985 -1079274 - B2_Mm1t SINE B2 -104 89 2 1 1740 450 215 12 12 chr5 151457985 151458065 -1079194 - RSINE1 SINE B4 -83 82 3 1 1740 401 255 116 148 chr5 151458264 151458307 -1078952 + MER2 DNA MER2_type 163 203 -142 1 1740 1465 43 37 11 chr5 151458307 151458494 -1078765 + B2_Mm2 SINE B2 4 195 0 1 1740 401 255 116 148 chr5 151458494 151458639 -1078620 + MER2 DNA MER2_type 204 345 0 1 1740 180 0 0 0 chr5 151458739 151458759 -1078500 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 1 1740 34 55 0 0 chr5 151459004 151459059 -1078200 + AT_rich Low_complexity Low_complexity 1 55 0 1 1740 1072 94 0 0 chr5 151459069 151459207 -1078052 + B1_Mus1 SINE Alu 1 138 -10 1 1740 196 53 26 26 chr5 151459207 151459246 -1078013 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1 1740 285 236 156 99 chr5 151459264 151459405 -1077854 + LTR82A LTR ERVL 83 231 -641 1 1740 294 312 73 46 chr5 151459492 151459643 -1077616 + LTR82A LTR ERVL 424 578 -294 1 1740 369 283 33 0 chr5 151459798 151459890 -1077369 + B1F SINE Alu 53 147 -2 1 1740 263 264 14 14 chr5 151459890 151459963 -1077296 + ID2 SINE ID 2 74 -9 1 1740 354 251 6 213 chr5 151460260 151460425 -1076834 + B1F SINE Alu 17 147 -2 1 1740 709 183 61 8 chr5 151460695 151460827 -1076432 + B1_Mus2 SINE Alu 1 139 -8 1 1740 219 36 0 0 chr5 151461074 151461102 -1076157 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 1 1740 186 254 55 0 chr5 151461392 151461447 -1075812 + MIRc SINE MIR 210 267 -1 1 1740 1059 98 0 0 chr5 151461478 151461621 -1075638 - B1_Mus1 SINE Alu -1 147 5 1 1740 327 47 0 0 chr5 151461961 151461967 -1075292 + (A)n Simple_repeat Simple_repeat 1 6 0 1 1740 1197 54 0 0 chr5 151461967 151462114 -1075145 + B1_Mus2 SINE Alu 1 147 0 1 1740 327 47 0 0 chr5 151462114 151462150 -1075109 + (A)n Simple_repeat Simple_repeat 1 36 0 1 1740 1137 62 7 0 chr5 151462189 151462335 -1074924 + B1_Mm SINE Alu 1 147 0 1 1740 1211 157 36 9 chr5 151462395 151462614 -1074645 + URR1B DNA MER1_type 1 225 0 1 1740 897 229 30 35 chr5 151462924 151463123 -1074136 + B3 SINE B2 2 199 -17 1 1740 1095 80 0 0 chr5 151463145 151463283 -1073976 + B1_Mus1 SINE Alu 2 139 -9 1 1740 275 65 22 0 chr5 151463283 151463329 -1073930 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1 1740 408 40 0 0 chr5 151463340 151463390 -1073869 + (CA)n Simple_repeat Simple_repeat 1 50 0 1 1740 938 62 132 0 chr5 151465188 151465317 -1071942 - B1_Mus2 SINE Alu 0 147 2 1 1740 296 194 0 31 chr5 151465350 151465414 -1071845 + 4.5SRNA scRNA scRNA 29 90 -4 1 1740 782 67 10 0 chr5 151465363 151465467 -1071792 + B1_Mus2 SINE Alu 43 147 0 1 1740 27 0 0 0 chr5 151465512 151465539 -1071720 + AT_rich Low_complexity Low_complexity 1 27 0 1 1740 1567 32 16 0 chr5 151465561 151465750 -1071509 - B2_Mm1a SINE B2 0 193 2 1 1740 335 323 81 75 chr5 151465926 151466100 -1071159 - ID_B1 SINE B4 0 224 50 1 1740 517 244 43 106 chr5 151466034 151466222 -1071037 + B4 SINE B4 39 214 -78 1 1740 936 53 35 64 chr5 151466102 151466243 -1071016 + B1_Mm SINE Alu 11 147 0 1 1740 2830 90 52 21 chr5 151466375 151466795 -1070464 - RLTR1D LTR ERV1 -16 589 157 1 1740 296 269 92 96 chr5 151467086 151467183 -1070076 - YREP_Mm Unknown Unknown -1414 398 198 1 1740 420 278 130 0 chr5 151467183 151467298 -1069961 + B1F SINE Alu 6 135 -14 1 1740 214 229 265 68 chr5 151467327 151467444 -1069815 + B1F SINE Alu 5 144 -5 1 1740 1552 27 27 0 chr5 151468911 151469099 -1068160 - B2_Mm1t SINE B2 0 193 1 1 1740 1234 34 0 7 chr5 151469147 151469296 -1067963 + B1_Mus1 SINE Alu 1 148 0 1 1740 252 0 0 0 chr5 151469403 151469431 -1067828 + (TC)n Simple_repeat Simple_repeat 2 29 0 1 1740 2912 104 25 51 chr5 151469690 151470178 -1067081 + MT2C_Mm LTR ERVL 1 475 0 1 1740 260 323 0 0 chr5 151470182 151470247 -1067012 - ID4_ SINE ID -13 70 6 1 1740 1239 200 190 145 chr5 151470396 151470864 -1066395 + MT2B LTR ERVL 1 567 -34 1 1740 180 176 0 0 chr5 151470864 151470898 -1066361 + (CATATA)n Simple_repeat Simple_repeat 4 37 0 1 1740 293 135 0 71 chr5 151470898 151470954 -1066305 + MT2B LTR ERVL 531 582 -2 1 1740 739 188 64 16 chr5 151471235 151471408 -1065851 - B3 SINE B2 -10 183 2 1 1740 917 217 54 0 chr5 151471421 151471605 -1065654 - B3 SINE B2 -21 195 2 1 1740 207 0 0 0 chr5 151471625 151471648 -1065611 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1 1740 1199 62 0 0 chr5 151471677 151471823 -1065436 - B1_Mus2 SINE Alu 0 147 2 1 1740 228 259 0 0 chr5 151471859 151471917 -1065342 + T-rich Low_complexity Low_complexity 1 58 0 1 1740 778 181 7 26 chr5 151471918 151472071 -1065188 - B1_Mur4 SINE Alu 0 150 1 1 1740 647 324 103 53 chr5 151472526 151472993 -1064266 + MLT1D LTR MaLR 1 490 -15 1 1740 1209 27 0 20 chr5 151473049 151473198 -1064061 + B1_Mm SINE Alu 2 147 0 1 1740 697 175 126 8 chr5 151473399 151473526 -1063733 + B3A SINE B2 2 143 -55 1 1740 1147 101 6 0 chr5 151474135 151474294 -1062965 + B2_Mm1t SINE B2 1 160 -33 1 1740 180 0 0 0 chr5 151474294 151474314 -1062945 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1 1740 613 277 117 11 chr5 151474314 151474333 -1062926 + B3A SINE B2 178 197 -1 1 1740 258 56 0 0 chr5 151474344 151474380 -1062879 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 1 1740 876 151 13 27 chr5 151474382 151474532 -1062727 - B1_Mur2 SINE Alu -1 148 1 1 1740 332 243 84 91 chr5 151475226 151475256 -1062003 + ID_B1 SINE B4 71 223 -1 1 1740 554 165 8 121 chr5 151475256 151475380 -1061879 + PB1D9 SINE Alu 11 120 0 1 1740 634 176 80 14 chr5 151475395 151475533 -1061726 + B1F1 SINE Alu 1 147 -2 1 1740 366 93 0 18 chr5 151475578 151475633 -1061626 - B2_Mm2 SINE B2 -94 101 48 1 1740 793 124 8 30 chr5 151475656 151475789 -1061470 - B2_Mm1a SINE B2 -63 130 1 1 1740 28 29 0 0 chr5 151475793 151475828 -1061431 + AT_rich Low_complexity Low_complexity 1 35 0 1 1740 407 220 97 48 chr5 151475829 151475953 -1061306 + B1_Mus1 SINE Alu 2 131 -18 1 1740 237 243 114 61 chr5 151475852 151475966 -1061293 + RLTR25B LTR ERVK 435 554 -474 1 1740 232 270 0 0 chr5 151475972 151476035 -1061224 + A-rich Low_complexity Low_complexity 1 63 0 1 1740 252 59 0 0 chr5 151476444 151476478 -1060781 + (CGG)n Simple_repeat Simple_repeat 3 36 0 1 1740 33 43 0 0 chr5 151476670 151476717 -1060542 + GC_rich Low_complexity Low_complexity 1 47 0 1 1740 22 0 0 0 chr5 151476727 151476749 -1060510 + GC_rich Low_complexity Low_complexity 1 22 0 1 1740 533 80 11 0 chr5 151476879 151476967 -1060292 + (GA)n Simple_repeat Simple_repeat 1 89 0 1 1740 241 220 0 0 chr5 151477091 151477141 -1060118 + (CGG)n Simple_repeat Simple_repeat 2 51 0 1 1740 303 28 0 0 chr5 151479228 151479264 -1057995 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 1 1740 425 180 50 21 chr5 151479514 151479624 -1057635 - PB1D7 SINE Alu -1 119 1 1 1740 387 295 115 0 chr5 151480577 151480716 -1056543 + RSINE1 SINE B4 2 156 -9 1 1740 324 0 0 0 chr5 151480717 151480753 -1056506 + (CA)n Simple_repeat Simple_repeat 1 36 0 1 1740 200 34 0 33 chr5 151480753 151480782 -1056477 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1 1740 1036 30 15 0 chr5 151480879 151481011 -1056248 + B1_Mus1 SINE Alu 15 148 0 1 1740 21 0 0 0 chr5 151481124 151481145 -1056114 + AT_rich Low_complexity Low_complexity 1 21 0 1 1740 697 125 19 9 chr5 151481156 151481261 -1055998 + PB1D9 SINE Alu 2 107 -13 1 1740 330 215 0 0 chr5 151481297 151481376 -1055883 + A-rich Low_complexity Low_complexity 1 79 0 1 1740 426 144 27 60 chr5 151481619 151481803 -1055456 + (CAGTG)n Simple_repeat Simple_repeat 3 180 0 1 1740 271 209 4 128 chr5 151482425 151482522 -1054737 - RSINE1 SINE B4 -9 156 77 1 1740 718 149 26 78 chr5 151482522 151482675 -1054584 - B1_Mur3 SINE Alu 0 149 5 1 1740 277 366 82 85 chr5 151482675 151482884 -1054375 - RSINE1 SINE B4 -80 212 2 1 1740 25 31 0 0 chr5 151482893 151482925 -1054334 + AT_rich Low_complexity Low_complexity 1 32 0 1 1740 304 179 54 0 chr5 151482968 151483024 -1054235 - HAL1-3A_ME LINE L1 -823 2035 1977 1 1740 492 275 64 70 chr5 151483152 151483324 -1053935 + MER20 DNA MER1_type 49 219 0 1 1740 626 176 175 8 chr5 151483560 151483686 -1053573 + B1_Mus2 SINE Alu 1 147 0 1 1740 293 289 0 26 chr5 151483941 151484058 -1053201 - L1MB8 LINE L1 -16 6162 6049 1 1740 585 0 0 0 chr5 151484101 151484166 -1053093 + (TTTCC)n Simple_repeat Simple_repeat 2 66 0 1 1740 306 0 0 0 chr5 151484166 151484200 -1053059 + (TC)n Simple_repeat Simple_repeat 1 34 0 1 1740 1345 76 32 0 chr5 151484200 151484385 -1052874 - B2_Mm2 SINE B2 -4 191 1 1 1740 240 304 8 82 chr5 151484513 151484635 -1052624 + PB1D10 SINE Alu 4 116 -1 1 1740 1108 62 7 0 chr5 151485466 151485611 -1051648 - B1_Mus2 SINE Alu 0 147 2 1 1740 289 311 209 7 chr5 151485946 151486273 -1050986 - L1MC4a LINE L1 -1988 5894 5498 1 1740 522 70 0 0 chr5 151486273 151486344 -1050915 + (TA)n Simple_repeat Simple_repeat 1 71 0 1 1740 289 311 209 7 chr5 151486344 151486476 -1050783 - L1MC4a LINE L1 -2385 5497 5343 1 1740 707 0 0 12 chr5 151486485 151486569 -1050690 + (TCCCC)n Simple_repeat Simple_repeat 3 85 0 1 1740 276 100 0 0 chr5 151486817 151486857 -1050402 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1 1740 439 305 8 15 chr5 151486860 151486990 -1050269 - B1F2 SINE Alu -20 129 1 1 1740 494 57 0 14 chr5 151487082 151487153 -1050106 + (TCCCC)n Simple_repeat Simple_repeat 1 70 0 1 1740 837 171 14 14 chr5 151487153 151487301 -1049958 - B1_Mur2 SINE Alu 0 149 2 1 1740 785 115 191 6 chr5 151487354 151487511 -1049748 + B2_Mm2 SINE B2 1 186 -9 1 1740 281 286 82 62 chr5 151487545 151487642 -1049617 - RSINE1 SINE B4 -8 157 59 1 1740 328 279 142 18 chr5 151487767 151487986 -1049273 - L1MC4a LINE L1 -869 5277 5032 1 1740 1285 14 0 0 chr5 151488059 151488206 -1049053 + B1_Mm SINE Alu 1 147 0 1 1740 267 31 0 0 chr5 151488206 151488238 -1049021 + (A)n Simple_repeat Simple_repeat 1 32 0 1 1740 319 212 102 36 chr5 151488736 151488873 -1048386 - L1MC LINE L1 -1267 4879 4734 1 1740 527 245 132 0 chr5 151488881 151488987 -1048272 - B1_Mur1 SINE Alu -29 120 1 1 1740 509 308 0 82 chr5 151489018 151489188 -1048071 + B3A SINE B2 1 156 -42 1 1740 239 133 0 22 chr5 151489202 151489248 -1048011 + CT-rich Low_complexity Low_complexity 1 45 0 1 1740 808 108 0 0 chr5 151489370 151489481 -1047778 - B1_Mm SINE Alu -10 137 27 1 1740 405 326 137 35 chr5 151489611 151489808 -1047451 + MLT1F LTR MaLR 4 220 -328 1 1740 355 292 19 9 chr5 151489810 151489917 -1047342 - LTR40a LTR ERVL -13 506 399 1 1740 468 202 43 0 chr5 151490069 151490163 -1047096 - PB1D7 SINE Alu 0 120 23 1 1740 180 0 0 0 chr5 151490904 151490924 -1046335 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 1 1740 711 117 17 35 chr5 151490933 151491048 -1046211 - B1_Mm SINE Alu 0 147 35 1 1740 429 20 0 0 chr5 151491667 151491717 -1045542 + (TTTTC)n Simple_repeat Simple_repeat 4 53 0 1 1740 1245 97 10 61 chr5 151492641 151492839 -1044420 + B2_Mm1t SINE B2 2 189 -4 1 1740 248 305 80 68 chr5 151492869 151492957 -1044302 - RSINE1 SINE B4 -12 153 65 1 1740 703 275 141 1 chr5 151493371 151493670 -1043589 - ERVL-B4-int LTR ERVL -390 5324 5032 1 1740 309 302 168 0 chr5 151493926 151494075 -1043184 - L2 LINE L2 -1617 1802 1629 1 1740 248 192 0 37 chr5 151494108 151494162 -1043097 + (CATA)n Simple_repeat Simple_repeat 1 52 0 1 1740 313 167 100 0 chr5 151494162 151494222 -1043037 + HAL1-3A_ME LINE L1 1975 2040 -818 1 1740 24 0 0 0 chr5 151494493 151494517 -1042742 + AT_rich Low_complexity Low_complexity 1 24 0 1 1740 722 123 9 0 chr5 151494538 151494644 -1042615 - B2_Mm1t SINE B2 -85 108 2 1 1740 28 0 0 0 chr5 151494769 151494797 -1042462 + AT_rich Low_complexity Low_complexity 1 28 0 1 1740 424 294 88 14 chr5 151495266 151495414 -1041845 - MLT1H LTR MaLR -300 249 91 1 1740 437 132 0 0 chr5 151495418 151495501 -1041758 - L1Md_F2 LINE L1 0 6582 6500 1 1740 1173 117 6 11 chr5 151495512 151495693 -1041566 - B2_Mm2 SINE B2 -15 180 1 1 1740 195 211 11 146 chr5 151495815 151495904 -1041355 + MIR SINE MIR 112 188 -74 1 1740 372 291 113 50 chr5 151495920 151496061 -1041198 + Tigger7 DNA MER2_type 3 152 -2339 1 1740 436 285 201 30 chr5 151496099 151496298 -1040961 + Tigger7 DNA MER2_type 227 459 -2032 1 1740 180 152 0 0 chr5 151496351 151496384 -1040875 + (TA)n Simple_repeat Simple_repeat 2 34 0 1 1740 240 272 81 58 chr5 151496390 151496476 -1040783 + Tigger7 DNA MER2_type 2404 2491 0 1 1740 848 126 285 29 chr5 151496567 151496739 -1040520 - B3 SINE B2 0 216 1 1 1740 1256 163 13 22 chr5 151496842 151497068 -1040191 - URR1B DNA MER1_type 0 225 2 1 1740 402 114 150 12 chr5 151497191 151497271 -1039988 - PB1D9 SINE Alu -14 106 16 1 1740 1122 63 152 0 chr5 151497273 151497431 -1039828 + B2_Mm2 SINE B2 2 183 -12 1 1740 225 0 0 0 chr5 151497431 151497456 -1039803 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1 1740 828 205 85 19 chr5 151497502 151497528 -1039731 + RCHARR1 DNA MER1_type 601 623 -351 1 1740 1167 68 0 0 chr5 151497528 151497675 -1039584 - B1_Mus2 SINE Alu 0 147 1 1 1740 828 205 85 19 chr5 151497675 151497907 -1039352 + RCHARR1 DNA MER1_type 624 876 -98 1 1740 1054 134 0 28 chr5 151497911 151498087 -1039172 + B2_Mm2 SINE B2 2 172 -23 1 1740 1359 72 28 0 chr5 151498087 151498267 -1038992 - B2_Mm2 SINE B2 -8 187 3 1 1740 294 211 99 0 chr5 151498268 151498339 -1038920 - RCHARR1 DNA MER1_type -381 593 516 1 1740 255 61 0 0 chr5 151498380 151498413 -1038846 + (CGTG)n Simple_repeat Simple_repeat 1 33 0 1 1740 579 285 161 24 chr5 151498422 151498627 -1038632 - B4A SINE B4 -59 233 1 1 1740 788 299 158 61 chr5 151498639 151499113 -1038146 - RCHARR1 DNA MER1_type -451 523 4 1 1740 434 254 120 23 chr5 151499365 151499498 -1037761 - B4 SINE B4 -114 178 33 1 1740 242 302 0 44 chr5 151499540 151499630 -1037629 + MT2B LTR ERVL 155 240 -361 1 1740 620 183 91 8 chr5 151499564 151499685 -1037574 + B1_Mur4 SINE Alu 14 144 -6 1 1740 288 0 0 0 chr5 151499687 151499719 -1037540 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 1 1740 252 221 146 61 chr5 151499914 151499996 -1037263 - B1_Mur1 SINE Alu 0 149 61 1 1740 404 243 111 59 chr5 151500063 151500216 -1037043 - RSINE1 SINE B4 -2 163 3 1 1740 1047 48 15 37 chr5 151500442 151500465 -1036794 + B1_Mm SINE Alu 1 146 -1 2 1740 572 199 77 32 chr5 151500465 151500621 -1036638 + ID_B1 SINE B4 60 222 -2 3 1740 247 296 27 27 chr5 151500661 151500734 -1036525 - RSINE1 SINE B4 0 165 93 4 1740 207 0 0 0 chr5 151500792 151500815 -1036444 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5 1740 1034 112 0 0 chr5 151500815 151500949 -1036310 - B1_Mus2 SINE Alu -9 138 5 6 1740 561 229 32 19 chr5 151501366 151501522 -1035737 - Lx7 LINE L1 -774 6922 6765 7 1740 320 308 12 6 chr5 151501911 151502058 -1035201 - L1M2 LINE L1 -3865 2278 2126 8 1740 222 62 0 0 chr5 151502388 151502420 -1034839 + (T)n Simple_repeat Simple_repeat 1 32 0 9 1740 1214 62 0 0 chr5 151502423 151502569 -1034690 - B1_Mus2 SINE Alu 0 147 2 1 1740 8204 20 0 1 chr5 151502585 151503960 -1033299 - L1Md_T LINE L1 0 6582 5209 1 1740 558 142 203 8 chr5 151503971 151504099 -1033160 - RMER15 LTR ERVL -405 170 18 1 1740 242 289 23 35 chr5 151504127 151504213 -1033046 - L2 LINE L2 -1836 1583 1499 1 1740 638 162 84 49 chr5 151504469 151504612 -1032647 - B1_Mur2 SINE Alu -1 148 1 1 1740 497 312 112 0 chr5 151504766 151504971 -1032288 - MER2 DNA MER2_type -32 313 86 1 1740 350 253 0 22 chr5 151505884 151505973 -1031286 + Lx7 LINE L1 6917 7003 -693 1 1740 2667 106 96 11 chr5 151505973 151506411 -1030848 + MT2C_Mm LTR ERVL 1 475 0 1 1740 27134 89 38 23 chr5 151506411 151506927 -1030332 + MERVL-int LTR ERVL 1 531 -4954 1 1740 183 217 48 32 chr5 151506927 151506989 -1030270 - L2 LINE L2 -879 2540 2478 1 1740 27134 89 38 23 chr5 151506989 151510531 -1026728 + MERVL-int LTR ERVL 532 4180 -1305 1 1740 607 158 10 0 chr5 151510621 151510722 -1026537 + U6 snRNA snRNA 4 105 -2 1 1740 385 295 104 24 chr5 151510979 151511104 -1026155 - B1F2 SINE Alu -8 141 7 2 1740 201 240 0 57 chr5 151511128 151511181 -1026078 + polypyrimidine Low_complexity Low_complexity 3 52 0 2 1740 246 301 79 67 chr5 151511291 151511380 -1025879 - B4A SINE B4 -122 170 81 2 1740 2199 228 126 105 chr5 151511396 151512085 -1025174 - RMER1A Other Other -7 1023 339 2 1740 3339 41 5 0 chr5 151512085 151512479 -1024780 - MTA_Mm LTR MaLR 0 396 1 2 1740 2199 228 126 105 chr5 151512479 151512763 -1024496 - RMER1A Other Other -692 338 29 2 1740 524 211 200 0 chr5 151512818 151512993 -1024266 - RMER1A Other Other -626 404 85 2 1740 390 306 36 41 chr5 151513492 151513636 -1023623 - B4A SINE B4 -22 143 1 2 1740 911 229 24 0 chr5 151513655 151513860 -1023399 - B3 SINE B2 -6 210 1 2 1740 694 308 91 40 chr5 151514105 151514379 -1022880 - B4A SINE B4 -1 291 4 2 1740 786 151 139 36 chr5 151514611 151514776 -1022483 + URR1B DNA MER1_type 1 182 -43 2 1740 2129 106 3 15 chr5 151514877 151514892 -1022367 - L1_Mus3 LINE L1 0 6638 6624 3 1740 1220 41 7 0 chr5 151514892 151515038 -1022221 - B1_Mm SINE Alu 0 147 1 3 1740 2129 106 3 15 chr5 151515038 151515359 -1021900 - L1_Mus3 LINE L1 -15 6623 6306 3 1740 244 291 173 70 chr5 151515442 151515656 -1021603 - L2c LINE L2 -2 3385 3150 3 1740 216 0 0 0 chr5 151516586 151516610 -1020649 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 1740 1493 141 0 17 chr5 151516660 151516898 -1020361 + ORR1A2 LTR MaLR 1 234 -93 3 1740 336 194 0 29 chr5 151517350 151517419 -1019840 - PB1D9 SINE Alu -13 107 41 3 1740 1534 42 0 54 chr5 151517449 151517652 -1019607 - B2_Mm1t SINE B2 -1 192 1 3 1740 180 348 0 0 chr5 151517677 151517723 -1019536 - MIR SINE MIR -21 241 196 3 1740 180 0 0 0 chr5 151518446 151518466 -1018793 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 3 1740 1013 70 4 0 chr5 151518485 151518631 -1018628 - B1_Mus1 SINE Alu 0 150 1 3 1740 528 276 69 19 chr5 151518631 151518675 -1018584 - B4 SINE B4 -201 91 40 4 1740 288 0 0 0 chr5 151518704 151518736 -1018523 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 4 1741 185 234 0 190 chr5 151520017 151520096 -1017163 - L3 LINE CR1 -1163 3326 3263 4 1741 728 258 15 49 chr5 151521034 151521238 -1016021 - B3A SINE B2 0 198 2 4 1741 1440 221 82 18 chr5 151521334 151521674 -1015585 - MTEb LTR MaLR -17 362 1 4 1741 941 182 20 46 chr5 151521893 151522089 -1015170 + URR1B DNA MER1_type 2 192 -33 4 1741 411 270 17 0 chr5 151522123 151522238 -1015021 - PB1D10 SINE Alu 0 117 1 4 1741 231 114 0 0 chr5 151522790 151522825 -1014434 + (CACG)n Simple_repeat Simple_repeat 1 35 0 4 1741 848 272 128 40 chr5 151522827 151523271 -1013988 - RMER5 LTR ERV1 -19 515 33 4 1741 260 27 0 26 chr5 151524241 151524279 -1012980 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 4 1741 1043 16 16 0 chr5 151524279 151524406 -1012853 - B1_Mus1 SINE Alu -2 146 18 5 1741 848 76 37 37 chr5 151524550 151524686 -1012573 - B1_Mur4 SINE Alu 0 150 15 5 1741 437 219 67 87 chr5 151524558 151524708 -1012551 - B4A SINE B4 -68 224 78 5 1741 635 201 71 7 chr5 151525375 151525515 -1011744 - B1_Mur3 SINE Alu 0 149 1 5 1741 23 54 0 0 chr5 151525969 151526006 -1011253 + AT_rich Low_complexity Low_complexity 1 37 0 5 1741 408 301 151 50 chr5 151526227 151526591 -1010668 + RMER10A LTR ERVL 27 427 -15 5 1741 23 0 0 0 chr5 151526998 151527021 -1010238 + AT_rich Low_complexity Low_complexity 1 23 0 5 1741 427 308 8 62 chr5 151527915 151528043 -1009216 + RSINE1 SINE B4 44 164 -1 5 1741 21 0 0 0 chr5 151528367 151528388 -1008871 + AT_rich Low_complexity Low_complexity 1 21 0 5 1741 458 284 0 0 chr5 151528694 151528789 -1008470 - ID_B1 SINE B4 -7 217 123 5 1741 1106 67 0 0 chr5 151528822 151528957 -1008302 - B1_Mus1 SINE Alu -9 139 5 6 1741 353 344 71 8 chr5 151528957 151529083 -1008176 - ID_B1 SINE B4 -89 135 2 5 1741 224 194 0 0 chr5 151529635 151529671 -1007588 + (CAG)n Simple_repeat Simple_repeat 3 38 0 6 1741 246 261 34 0 chr5 151530360 151530448 -1006811 + L1MC LINE L1 4628 4718 -1428 6 1741 786 127 0 0 chr5 151530718 151530844 -1006415 + (TG)n Simple_repeat Simple_repeat 2 127 0 6 1741 551 242 70 0 chr5 151530845 151530973 -1006286 - B3A SINE B2 -56 142 6 6 1741 282 73 0 0 chr5 151533309 151533350 -1003909 + (TG)n Simple_repeat Simple_repeat 2 42 0 6 1741 183 42 0 0 chr5 151533355 151533379 -1003880 + (TCTG)n Simple_repeat Simple_repeat 4 27 0 6 1741 249 33 0 0 chr5 151533397 151533427 -1003832 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 6 1741 598 328 44 52 chr5 151533523 151533774 -1003485 - B4A SINE B4 -33 259 11 6 1741 28 71 0 0 chr5 151534421 151534477 -1002782 + AT_rich Low_complexity Low_complexity 1 56 0 6 1741 1001 114 135 122 chr5 151534838 151535068 -1002191 - ORR1B1 LTR MaLR -115 279 47 7 1741 1211 55 0 0 chr5 151535289 151535435 -1001824 + B1_Mus2 SINE Alu 2 147 0 7 1741 1520 196 53 83 chr5 151535467 151535809 -1001450 - ORR1C2 LTR MaLR 0 384 54 7 1741 333 0 0 0 chr5 151535809 151535846 -1001413 + (TG)n Simple_repeat Simple_repeat 2 38 0 7 1741 1520 196 53 83 chr5 151535846 151535899 -1001360 - ORR1C2 LTR MaLR -331 53 1 7 1741 21 0 0 0 chr5 151536202 151536223 -1001036 + AT_rich Low_complexity Low_complexity 1 21 0 7 1741 585 200 7 85 chr5 151536223 151536376 -1000883 - B1_Mur3 SINE Alu -6 143 3 7 1741 21 0 0 0 chr5 151536585 151536606 -1000653 + AT_rich Low_complexity Low_complexity 1 21 0 7 1741 3178 139 177 42 chr5 151536726 151537728 -999531 - L1Md_F LINE L1 -4512 1371 273 7 1741 3355 46 0 12 chr5 151537733 151538154 -999105 + L1Md_F2 LINE L1 6167 6582 0 7 1741 864 280 28 77 chr5 151538181 151538506 -998753 - MLT2B2 LTR ERVL -8 507 199 7 1741 28 29 0 0 chr5 151538760 151538795 -998464 + AT_rich Low_complexity Low_complexity 1 35 0 8 1741 204 125 0 0 chr5 151539864 151539896 -997363 + (T)n Simple_repeat Simple_repeat 1 32 0 8 1741 1175 61 0 0 chr5 151539896 151540043 -997216 - B1_Mm SINE Alu 0 147 1 8 1741 788 173 8 0 chr5 151540046 151540173 -997086 - B1_Mur4 SINE Alu 0 150 23 8 1741 396 0 0 0 chr5 151540174 151540218 -997041 + (TG)n Simple_repeat Simple_repeat 2 45 0 8 1741 922 110 88 0 chr5 151540332 151540468 -996791 + B1_Mus1 SINE Alu 1 148 0 8 1741 700 251 197 41 chr5 151540569 151540935 -996324 - BGLII_B LTR ERVK -1 440 18 8 1741 807 75 0 0 chr5 151542145 151542251 -995008 + B2_Mm2 SINE B2 2 107 -88 8 1741 219 281 48 82 chr5 151542251 151542292 -994967 + B4A SINE B4 2 143 -149 8 1741 263 215 37 37 chr5 151542582 151542664 -994595 + B1_Mur4 SINE Alu 6 87 -63 8 1741 500 56 28 0 chr5 151543128 151543199 -994060 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 9 1741 549 78 42 25 chr5 151543200 151543319 -993940 + (TCCCC)n Simple_repeat Simple_repeat 4 124 0 9 1741 481 242 23 3 chr5 151543322 151543438 -993821 - B1_Mm SINE Alu 0 120 3 9 1741 276 325 0 0 chr5 151543960 151544037 -993222 + ID4 SINE ID 2 78 -5 9 1741 416 191 272 35 chr5 151544072 151544186 -993073 + B1_Mur1 SINE Alu 9 149 0 9 1741 211 297 16 0 chr5 151544447 151544511 -992748 - ID4_ SINE ID -9 74 10 9 1741 240 253 21 32 chr5 151545600 151545694 -991565 + (CATA)n Simple_repeat Simple_repeat 2 94 0 9 1741 2232 171 104 13 chr5 151545715 151546178 -991081 - RLTR16 LTR ERVK 0 505 1 9 1741 245 320 196 0 chr5 151546490 151546587 -990672 - B4A SINE B4 -176 116 1 9 1741 405 0 0 0 chr5 151546587 151546632 -990627 + (TA)n Simple_repeat Simple_repeat 2 46 0 9 1741 284 203 37 45 chr5 151547799 151547933 -989326 + (TATAA)n Simple_repeat Simple_repeat 1 133 0 1 1741 189 121 0 0 chr5 151548093 151548126 -989133 + (TG)n Simple_repeat Simple_repeat 1 33 0 1 1741 963 175 168 24 chr5 151548251 151548543 -988716 - Lx4A LINE L1 0 7058 6725 1 1741 1096 88 0 7 chr5 151548961 151549110 -988149 - B1_Mus1 SINE Alu 0 148 1 1 1741 674 236 0 51 chr5 151549370 151549526 -987733 - B1_Mur3 SINE Alu 0 149 2 1 1741 444 202 0 23 chr5 151549532 151549618 -987641 - B1_Mur4 SINE Alu -5 145 62 1 1741 2024 157 74 62 chr5 151549618 151550066 -987193 - RMER4A LTR ERVK -12 454 2 1 1741 795 249 84 5 chr5 151550246 151550436 -986823 - MTEb LTR MaLR -174 205 1 1 1741 881 157 7 0 chr5 151550477 151550617 -986642 - B1_Mur4 SINE Alu -1 149 9 1 1741 1273 102 21 0 chr5 151551060 151551247 -986012 + B2_Mm1t SINE B2 2 192 -1 1 1741 1067 144 119 0 chr5 151551561 151551762 -985497 - URR1A DNA MER1_type 0 226 2 1 1741 261 57 0 0 chr5 151551805 151551840 -985419 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1 1741 894 40 167 0 chr5 151552992 151553118 -984141 - B1_Mm SINE Alu 0 147 1 1 1741 215 318 11 34 chr5 151553547 151553635 -983624 - MIR SINE MIR -173 89 4 1 1741 490 175 70 16 chr5 151554559 151554687 -982572 + B1_Mus1 SINE Alu 2 136 -12 1 1741 243 0 0 0 chr5 151554688 151554715 -982544 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1 1741 323 194 29 88 chr5 151555262 151555364 -981895 - PB1D9 SINE Alu 0 120 25 1 1741 23 0 0 0 chr5 151555519 151555542 -981717 + AT_rich Low_complexity Low_complexity 1 23 0 1 1741 673 259 71 82 chr5 151556150 151556444 -980815 + B4 SINE B4 2 292 0 1 1741 520 290 8 31 chr5 151557270 151557398 -979861 - B4 SINE B4 -167 125 1 1 1741 217 211 39 0 chr5 151557824 151557876 -979383 + T-rich Low_complexity Low_complexity 2 55 0 1 1741 698 222 7 0 chr5 151558038 151558173 -979086 - B1_Mus2 SINE Alu -11 136 1 1 1741 578 265 22 7 chr5 151558198 151558335 -978924 - B1_Mur1 SINE Alu -9 140 2 1 1741 699 12 0 0 chr5 151559635 151559715 -977544 + (TTTTC)n Simple_repeat Simple_repeat 5 84 0 1 1741 207 0 0 0 chr5 151559717 151559740 -977519 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1 1741 1199 70 0 0 chr5 151559742 151559899 -977360 - B2_Mm2 SINE B2 -38 157 1 1 1741 26 0 0 0 chr5 151560269 151560295 -976964 + AT_rich Low_complexity Low_complexity 1 26 0 1 1741 482 206 115 19 chr5 151560325 151560429 -976830 - B1_Mm SINE Alu -3 144 31 1 1741 244 186 211 14 chr5 151560370 151560441 -976818 - 4.5SRNA scRNA scRNA -8 86 2 1 1741 242 0 0 160 chr5 151561844 151562056 -975203 + (CTCTG)n Simple_repeat Simple_repeat 3 180 0 1 1741 1286 210 81 31 chr5 151562575 151562934 -974325 + MTE2b LTR MaLR 1 377 -2 1 1741 825 107 0 0 chr5 151562978 151563100 -974159 + (TTTC)n Simple_repeat Simple_repeat 4 125 0 1 1741 224 331 57 35 chr5 151563103 151563244 -974015 + MER5A DNA MER1_type 36 179 -10 1 1741 26 0 0 0 chr5 151563551 151563577 -973682 + AT_rich Low_complexity Low_complexity 1 26 0 1 1741 473 279 8 54 chr5 151564465 151564594 -972665 - ID_B1 SINE B4 -20 204 82 1 1741 1209 124 11 0 chr5 151565201 151565378 -971881 + B2_Mm1t SINE B2 1 179 -14 1 1741 296 144 321 18 chr5 151565425 151565537 -971722 + B2_Mm2 SINE B2 47 192 -3 1 1741 366 318 45 26 chr5 151566613 151566768 -970491 - RSINE1 SINE B4 0 165 8 1 1741 269 221 100 72 chr5 151567632 151567740 -969519 - B1_Mur1 SINE Alu -1 148 12 1 1741 268 300 75 0 chr5 151568890 151568970 -968289 - MTEb LTR MaLR -15 364 279 1 1741 920 371 151 37 chr5 151569289 151570482 -966777 - ORR1D-int LTR MaLR -7 1502 48 1 1741 246 251 31 0 chr5 151571090 151571174 -966085 + B4 SINE B4 15 106 -186 1 1741 180 97 0 0 chr5 151571290 151571321 -965938 + (CTCA)n Simple_repeat Simple_repeat 4 34 0 1 1741 483 228 51 26 chr5 151571461 151571578 -965681 - PB1D9 SINE Alu 0 120 1 1 1741 757 299 28 28 chr5 151571610 151571827 -965432 - ID_B1 SINE B4 -2 222 6 1 1741 745 97 0 0 chr5 151572218 151572321 -964938 - B1_Mm SINE Alu 0 147 45 1 1741 201 74 0 0 chr5 151572857 151572884 -964375 + (TG)n Simple_repeat Simple_repeat 2 28 0 1 1741 322 291 37 37 chr5 151572935 151573042 -964217 - RSINE1 SINE B4 -41 124 18 1 1741 190 354 89 0 chr5 151573325 151573404 -963855 - MIR SINE MIR -131 131 46 1 1741 228 286 68 92 chr5 151573624 151573874 -963385 - L1M2 LINE L1 -583 5729 5486 1 1741 320 264 110 66 chr5 151573877 151574416 -962843 - L1M2 LINE L1 -734 5430 4864 1 1741 300 117 33 0 chr5 151574589 151574649 -962610 - L1M2 LINE L1 -3915 2228 2167 1 1741 348 303 170 0 chr5 151574945 151575133 -962126 - RMER15 LTR ERVL -14 561 342 1 1741 230 229 103 19 chr5 151575626 151575733 -961526 - MusHAL1 LINE L1 -2322 390 275 1 1741 1936 169 50 39 chr5 151575769 151576206 -961053 + RMER10A LTR ERVL 1 442 0 1 1741 472 248 87 16 chr5 151576951 151577078 -960181 + B1F2 SINE Alu 1 136 -13 1 1741 786 231 52 24 chr5 151577101 151577350 -959909 + Lx7 LINE L1 7160 7415 -281 1 1741 781 274 70 10 chr5 151577610 151577909 -959350 - Lx8 LINE L1 -360 7113 6797 1 1741 362 21 0 21 chr5 151577919 151577967 -959292 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 1 1741 23 92 0 0 chr5 151578839 151578904 -958355 + AT_rich Low_complexity Low_complexity 1 65 0 1 1741 875 265 65 25 chr5 151579424 151579703 -957556 - B4A SINE B4 0 292 3 1 1741 323 340 78 37 chr5 151580190 151580434 -956825 - MLT1J2 LTR MaLR -189 259 6 1 1741 318 272 85 12 chr5 151581129 151581211 -956048 - PB1D10 SINE Alu -29 88 1 1 1741 587 299 63 6 chr5 151581250 151581425 -955834 + B4A SINE B4 1 185 -107 1 1741 272 300 69 10 chr5 151583742 151583843 -953416 + MER2 DNA MER2_type 9 115 -230 1 1741 252 265 60 20 chr5 151583876 151583976 -953283 + MER2 DNA MER2_type 193 296 -49 1 1741 260 242 119 15 chr5 151584038 151584105 -953154 + MIR SINE MIR 49 122 -140 1 1741 249 286 39 13 chr5 151584420 151584498 -952761 - ID4 SINE ID -3 80 1 1 1741 24 32 0 0 chr5 151584555 151584586 -952673 + AT_rich Low_complexity Low_complexity 1 31 0 1 1741 442 304 52 52 chr5 151585245 151585477 -951782 - MLT1A0 LTR MaLR -131 234 3 1 1741 536 336 44 34 chr5 151585871 151586164 -951095 + MER82 DNA MER2_type 23 318 -335 1 1741 373 331 110 7 chr5 151586252 151586398 -950861 + MER82 DNA MER2_type 493 653 0 1 1741 1226 108 11 0 chr5 151586508 151586684 -950575 + B2_Mm1t SINE B2 2 179 -14 1 1741 366 113 300 67 chr5 151586749 151586869 -950390 + B2_Mm2 SINE B2 47 194 -1 1 1741 1205 41 7 0 chr5 151586898 151587043 -950216 + B1_Mus1 SINE Alu 1 146 -2 1 1741 947 215 77 0 chr5 151587408 151587617 -949642 + URR1B DNA MER1_type 1 225 0 1 1741 187 295 42 83 chr5 151588022 151588166 -949093 - L2c LINE L2 -4 3383 3246 1 1741 545 204 22 22 chr5 151588222 151588402 -948857 - RMER17C LTR ERVK -136 274 95 1 1741 24 53 0 0 chr5 151588498 151588536 -948723 + AT_rich Low_complexity Low_complexity 1 38 0 1 1741 232 195 0 0 chr5 151589099 151589140 -948119 + T-rich Low_complexity Low_complexity 1 41 0 1 1741 1154 88 0 0 chr5 151589140 151589288 -947971 - B1_Mus1 SINE Alu 0 148 1 1 1741 256 302 41 33 chr5 151589357 151589403 -947856 + ID_B1 SINE B4 39 90 -202 1 1741 287 250 250 0 chr5 151589403 151589495 -947764 + B1F1 SINE Alu 3 117 0 1 1741 863 229 38 5 chr5 151589505 151589689 -947570 + B3 SINE B2 1 190 -26 1 1741 441 0 0 0 chr5 151589691 151589740 -947519 + (TG)n Simple_repeat Simple_repeat 2 50 0 1 1741 585 211 93 37 chr5 151590223 151590445 -946814 - Lx4B LINE L1 -8 7050 6732 1 1741 510 321 61 10 chr5 151592063 151592261 -944998 + MIRb SINE MIR 55 262 -6 1 1741 194 105 26 0 chr5 151593030 151593068 -944191 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1 1741 397 286 5 7 chr5 151596581 151596689 -940570 - PB1D10 SINE Alu -36 113 7 1 1741 314 286 64 37 chr5 151596636 151596745 -940514 - B4A SINE B4 -148 144 33 1 1741 753 220 136 0 chr5 151597255 151597432 -939827 + B3 SINE B2 1 201 -15 1 1741 275 168 144 16 chr5 151597882 151597975 -939284 - B1_Mur4 SINE Alu -1 149 1 1 1741 328 212 0 241 chr5 151597947 151597984 -939275 - MT2B LTR ERVL -316 285 259 1 1741 1356 90 5 5 chr5 151597984 151598174 -939085 - B2_Mm1t SINE B2 -2 191 2 1 1741 328 212 0 241 chr5 151598174 151598273 -938986 - MT2B LTR ERVL -343 258 182 1 1741 668 228 0 0 chr5 151598273 151598288 -938971 - B1_Mur2 SINE Alu -33 116 3 1 1741 1139 75 31 0 chr5 151598493 151598652 -938607 + B2_Mm2 SINE B2 1 164 -31 1 1741 527 202 0 8 chr5 151598654 151598774 -938485 + GA-rich Low_complexity Low_complexity 2 120 0 1 1741 21 0 0 0 chr5 151599809 151599830 -937429 + AT_rich Low_complexity Low_complexity 1 21 0 1 1741 718 162 161 6 chr5 151600152 151600320 -936939 + B3 SINE B2 2 195 -21 1 1741 403 261 84 8 chr5 151601242 151601373 -935886 - MLT1A LTR MaLR -233 141 1 1 1741 204 40 0 0 chr5 151601485 151601510 -935749 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 1 1741 390 270 204 5 chr5 151601521 151601707 -935552 - ID_B1 SINE B4 -1 223 1 1 1741 1070 207 10 10 chr5 151601785 151601985 -935274 - B3 SINE B2 -15 201 2 2 1741 228 314 161 11 chr5 151602758 151602845 -934414 + PB1 SINE Alu 12 111 -16 2 1741 279 0 0 0 chr5 151602983 151603014 -934245 + (TG)n Simple_repeat Simple_repeat 1 31 0 2 1741 421 221 0 0 chr5 151603019 151603096 -934163 - ID4 SINE ID -5 78 2 2 1741 1225 34 7 0 chr5 151604015 151604162 -933097 - B1_Mus1 SINE Alu 0 148 1 2 1741 3389 25 5 0 chr5 151604590 151604983 -932276 - MTA_Mm LTR MaLR -1 395 1 2 1741 9340 20 8 4 chr5 151604983 151606076 -931183 - MTA_Mm-int LTR MaLR 0 1098 1 2 1741 3511 13 5 0 chr5 151606076 151606470 -930789 - MTA_Mm LTR MaLR 0 396 1 2 1741 199 290 63 21 chr5 151607093 151607188 -930071 - L2a LINE L2 -67 3359 3261 2 1741 627 295 7 0 chr5 151607315 151607464 -929795 + RSINE1 SINE B4 12 161 -4 2 1741 293 260 77 94 chr5 151607464 151607485 -929774 + B2_Mm2 SINE B2 11 177 -18 2 1741 185 175 50 0 chr5 151607667 151607707 -929552 - L2 LINE L2 -586 2833 2792 2 1741 213 108 0 0 chr5 151608547 151608584 -928675 + (T)n Simple_repeat Simple_repeat 1 37 0 2 1741 1236 28 0 0 chr5 151608587 151608729 -928530 - B1_Mus1 SINE Alu -6 142 1 2 1741 2186 78 165 6 chr5 151609061 151609424 -927835 - BGLII LTR ERVK 0 421 1 2 1741 732 48 9 37 chr5 151609473 151609582 -927677 - B1_Mm SINE Alu 0 147 42 2 1741 23 0 0 0 chr5 151611131 151611154 -926105 + AT_rich Low_complexity Low_complexity 1 23 0 2 1741 217 292 92 28 chr5 151613488 151613597 -923662 - L2a LINE L2 -4 3422 3307 2 1741 288 0 0 0 chr5 151614209 151614241 -923018 + (CATA)n Simple_repeat Simple_repeat 4 35 0 2 1741 251 196 0 0 chr5 151614389 151614435 -922824 - L1MEg LINE L1 -4760 1324 1279 2 1741 396 0 0 0 chr5 151614586 151614630 -922629 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2 1741 1152 58 0 0 chr5 151614630 151614768 -922491 - B1_Mm SINE Alu -9 138 1 2 1741 456 282 84 33 chr5 151615815 151616127 -921132 - ORR1E LTR MaLR 0 379 28 2 1741 1448 268 168 14 chr5 151616129 151616766 -920493 - ORR1E-int LTR MaLR -42 1538 804 2 1741 795 295 164 16 chr5 151616817 151617178 -920081 - ORR1E-int LTR MaLR -924 656 241 2 1741 1013 119 43 16 chr5 151617178 151617365 -919894 - URR1A DNA MER1_type 0 226 35 2 1741 672 46 0 0 chr5 151617525 151617612 -919647 - B1_Mus2 SINE Alu -10 137 51 2 1741 314 257 14 0 chr5 151617617 151617687 -919572 - ORR1E-int LTR MaLR -1505 75 5 2 1741 376 291 145 74 chr5 151617691 151618015 -919244 - ORR1E LTR MaLR 0 374 14 2 1741 333 206 0 68 chr5 151618583 151618656 -918603 - B1_Mus2 SINE Alu -78 69 2 2 1741 1111 59 0 0 chr5 151618906 151619041 -918218 + B1_Mus1 SINE Alu 1 135 -13 2 1741 378 0 0 0 chr5 151619041 151619083 -918176 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 2 1741 1167 185 136 33 chr5 151619312 151619642 -917617 - ORR1D1 LTR MaLR -8 366 3 2 1741 275 250 62 62 chr5 151619813 151619894 -917365 - ID4 SINE ID 0 83 3 2 1741 613 207 14 29 chr5 151620547 151620686 -916573 - B1_Mus2 SINE Alu 0 147 11 2 1741 232 259 69 0 chr5 151620746 151620804 -916455 - Lx8 LINE L1 -600 6873 6812 2 1741 334 169 0 30 chr5 151621454 151621521 -915738 - MTEa LTR MaLR -7 372 308 2 1741 892 247 202 36 chr5 151621728 151622169 -915090 - RMER13A LTR ERVK -312 548 35 2 1741 277 250 339 0 chr5 151622216 151622384 -914875 - MTEa LTR MaLR -115 264 40 2 1741 663 73 7 0 chr5 151622603 151622712 -914547 + B1_Mm SINE Alu 38 150 0 2 1741 776 162 80 4 chr5 151622730 151622935 -914324 + ORR1B1 LTR MaLR 26 246 -121 2 1741 624 173 0 9 chr5 151623311 151623422 -913837 - B1_Mus1 SINE Alu -11 137 28 2 1741 360 0 0 0 chr5 151623457 151623497 -913762 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 1741 573 214 32 0 chr5 151623671 151623797 -913462 + B1_Mur2 SINE Alu 4 133 -16 2 1741 583 119 18 9 chr5 151624269 151624335 -912924 + (GAAAA)n Simple_repeat Simple_repeat 5 70 0 2 1741 1247 41 0 0 chr5 151624335 151624482 -912777 + B1_Mm SINE Alu 1 147 0 2 1741 583 119 18 9 chr5 151624482 151624525 -912734 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 2 1741 650 151 25 16 chr5 151625806 151625927 -911332 + B1_Mur1 SINE Alu 28 149 0 2 1741 3431 28 5 0 chr5 151626227 151626621 -910638 + MTA_Mm LTR MaLR 1 396 0 2 1741 22 35 0 0 chr5 151626651 151626680 -910579 + AT_rich Low_complexity Low_complexity 1 29 0 2 1741 32 57 0 0 chr5 151627060 151627113 -910146 + AT_rich Low_complexity Low_complexity 1 53 0 2 1741 261 0 0 0 chr5 151627395 151627424 -909835 + (A)n Simple_repeat Simple_repeat 1 29 0 2 1741 1017 142 0 17 chr5 151627434 151627613 -909646 + B2_Mm2 SINE B2 2 177 -18 2 1741 498 112 90 29 chr5 151627664 151627779 -909480 - MTC LTR MaLR -13 406 272 2 1741 1974 104 131 3 chr5 151627779 151628116 -909143 + ORR1B1 LTR MaLR 1 380 -14 2 1741 805 261 23 107 chr5 151628130 151628439 -908820 - MTC LTR MaLR -137 284 2 2 1741 475 221 48 68 chr5 151628636 151628782 -908477 + B1F2 SINE Alu 5 147 -2 2 1741 241 279 0 12 chr5 151628849 151628929 -908330 + L1M3 LINE L1 5469 5547 -633 2 1741 431 316 42 29 chr5 151628957 151629106 -908153 + L1MB8 LINE L1 5656 5809 -369 2 1741 1341 214 52 22 chr5 151629106 151629469 -907790 - ORR1D1 LTR MaLR 0 374 1 2 1741 431 281 40 11 chr5 151629469 151629573 -907686 + L1MB8 LINE L1 5808 5911 -253 2 1741 197 146 21 0 chr5 151629777 151629825 -907434 + (TA)n Simple_repeat Simple_repeat 1 49 0 2 1741 381 93 0 0 chr5 151630158 151630212 -907047 + (GA)n Simple_repeat Simple_repeat 1 54 0 2 1741 294 73 0 0 chr5 151630377 151630418 -906841 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 1741 1337 205 91 67 chr5 151630436 151630886 -906373 + RLTR11A LTR ERVK 15 475 -53 2 1741 559 299 170 32 chr5 151630930 151631184 -906075 + L1M3 LINE L1 4683 4979 -1161 2 1741 423 98 0 0 chr5 151631184 151631245 -906014 + (CA)n Simple_repeat Simple_repeat 2 62 0 2 1741 559 299 170 32 chr5 151631245 151631584 -905675 + L1M3 LINE L1 4980 5357 -783 2 1741 866 203 44 5 chr5 151631585 151631788 -905471 + B3 SINE B2 1 211 -5 2 1741 640 278 99 13 chr5 151631993 151632296 -904963 + L1MA7 LINE L1 5568 5896 -395 2 1741 204 125 0 0 chr5 151632449 151632481 -904778 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 1741 447 123 0 0 chr5 151632490 151632571 -904688 + (CA)n Simple_repeat Simple_repeat 2 82 0 2 1741 572 274 106 63 chr5 151633942 151634292 -902967 - MT2A LTR ERVL -2 531 167 2 1741 806 163 14 0 chr5 151634488 151634627 -902632 + B1_Mur2 SINE Alu 8 141 -8 2 1741 54 40 0 0 chr5 151634783 151634858 -902401 + AT_rich Low_complexity Low_complexity 1 75 0 2 1741 213 309 0 0 chr5 151634935 151634990 -902269 - ID4_ SINE ID -26 57 3 2 1741 553 219 149 6 chr5 151635177 151635338 -901921 + MER82 DNA MER2_type 181 364 -289 2 1741 315 0 0 0 chr5 151635747 151635782 -901477 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2 1741 770 226 260 37 chr5 151635941 151636318 -900941 - Lx8 LINE L1 -31 7442 6982 2 1741 359 235 0 12 chr5 151636319 151636401 -900858 + MER82 DNA MER2_type 346 426 -227 2 1741 1075 98 98 0 chr5 151636419 151636582 -900677 + B2_Mm1t SINE B2 1 179 -14 2 1741 328 125 312 8 chr5 151636592 151636720 -900539 + B2_Mm2 SINE B2 29 195 0 2 1741 261 57 0 0 chr5 151637408 151637443 -899816 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 1741 441 196 70 26 chr5 151637722 151637837 -899422 - PB1D9 SINE Alu 0 120 1 2 1741 349 169 12 12 chr5 151637847 151637931 -899328 + C-rich Low_complexity Low_complexity 5 88 0 2 1741 719 289 151 0 chr5 151638015 151638320 -898939 - MLT1A0 LTR MaLR -2 363 13 2 1741 933 198 233 64 chr5 151638488 151638865 -898394 - RMER10A LTR ERVL -1 441 1 2 1741 5593 127 15 52 chr5 151639873 151640274 -896985 + Lx5 LINE L1 5286 5685 -1365 2 1741 1232 41 0 0 chr5 151640274 151640420 -896839 - B1_Mus2 SINE Alu 0 147 2 2 1741 5593 132 54 56 chr5 151640420 151641325 -895934 + Lx5 LINE L1 5686 6605 -445 2 1741 390 144 47 19 chr5 151641325 151641431 -895828 + Lx5 LINE L1 6942 7050 0 2 1741 521 223 12 12 chr5 151641503 151641671 -895588 + (TA)n Simple_repeat Simple_repeat 1 168 0 2 1741 240 163 0 0 chr5 151643754 151643797 -893462 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2 1741 559 201 63 28 chr5 151643815 151643958 -893301 + MTD LTR MaLR 13 160 -259 2 1741 393 337 92 16 chr5 151644044 151644228 -893031 + MLT1F2 LTR MaLR 363 560 0 2 1741 360 98 343 29 chr5 151644599 151644704 -892555 - B2_Mm2 SINE B2 -11 184 47 2 1741 959 110 155 0 chr5 151644751 151644906 -892353 - B2_Mm1t SINE B2 -14 179 1 2 1741 708 306 59 17 chr5 151644998 151645287 -891972 + Lx7 LINE L1 5609 5909 -1787 2 1741 763 288 133 1 chr5 151645691 151645985 -891274 + MTE2b LTR MaLR 1 351 -28 2 1741 1234 41 7 0 chr5 151645989 151646135 -891124 - B1_Mm SINE Alu 0 147 1 2 1741 1135 76 0 0 chr5 151647029 151647173 -890086 + B1_Mus1 SINE Alu 1 144 -4 2 1741 826 182 28 0 chr5 151647397 151647540 -889719 + B1_Mur1 SINE Alu 3 149 0 2 1741 1017 190 66 5 chr5 151647855 151648051 -889208 - B3 SINE B2 -4 212 5 2 1741 567 0 0 0 chr5 151648388 151648451 -888808 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 2 1741 1136 70 0 0 chr5 151648451 151648594 -888665 - B1_Mus2 SINE Alu -3 144 2 2 1741 218 310 0 0 chr5 151648668 151648755 -888504 + C-rich Low_complexity Low_complexity 3 89 0 2 1741 333 0 0 0 chr5 151649049 151649086 -888173 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 1741 576 285 189 29 chr5 151649251 151649670 -887589 - L1MC4a LINE L1 0 7882 7397 2 217 3344 171 79 31 chr5 151649696 151650340 -886919 - RMER1B Other Other -10 1056 382 2 1742 276 229 82 24 chr5 151650333 151650418 -886841 - L1MC4a LINE L1 -654 7388 7299 2 1742 509 261 401 25 chr5 151650424 151650621 -886638 + B4A SINE B4 1 271 -21 2 1742 250 211 169 63 chr5 151650629 151650771 -886488 - L1MC4a LINE L1 -600 7282 7126 2 1742 370 184 33 33 chr5 151650920 151651010 -886249 + MLT1A1 LTR MaLR 299 388 -20 2 1742 2146 170 16 11 chr5 151651034 151651408 -885851 - ORR1C1 LTR MaLR 0 378 3 2 1742 313 250 109 0 chr5 151652728 151652742 -884517 + PB1D7 SINE Alu 1 14 -106 3 1742 333 0 0 0 chr5 151652742 151652779 -884480 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 1742 764 134 0 0 chr5 151652779 151652898 -884361 + B1_Mus1 SINE Alu 25 143 -5 3 1742 2525 153 15 72 chr5 151653452 151653995 -883264 + RMER20A LTR ERVK 5 516 0 3 1742 448 139 105 0 chr5 151654062 151654148 -883111 - ORR1C2 LTR MaLR 0 384 290 3 1742 306 182 52 93 chr5 151654257 151654281 -882978 + PB1D10 SINE Alu 22 45 -72 3 1742 2558 96 51 182 chr5 151654281 151654397 -882862 + RLTR47_MM LTR ERV1 2 115 -417 3 1742 1028 96 19 0 chr5 151654397 151654554 -882705 + (TTCTCC)n Simple_repeat Simple_repeat 3 162 0 3 1742 2558 96 51 182 chr5 151654554 151654647 -882612 + RLTR47_MM LTR ERV1 116 126 -406 3 1742 1057 78 163 0 chr5 151654647 151654800 -882459 - B2_Mm1t SINE B2 -15 178 1 3 1742 2558 96 51 182 chr5 151654800 151655200 -882059 + RLTR47_MM LTR ERV1 127 532 0 3 1742 306 182 52 93 chr5 151655200 151655272 -881987 + PB1D10 SINE Alu 46 114 -3 3 1742 180 0 0 0 chr5 151655292 151655312 -881947 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 3 1742 218 345 144 24 chr5 151656034 151656242 -881017 - MIR SINE MIR -13 249 17 3 1742 792 99 41 0 chr5 151656597 151656718 -880541 - B1_Mur4 SINE Alu -2 148 23 3 1742 1011 93 57 0 chr5 151657733 151657873 -879386 - B1_Mus1 SINE Alu 0 148 1 3 1742 937 219 25 54 chr5 151658198 151658478 -878781 + RMER15 LTR ERVL 292 563 -12 3 1742 228 130 0 0 chr5 151658948 151658994 -878265 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 3 1742 1474 57 0 50 chr5 151659385 151659425 -877834 - B2_Mm2 SINE B2 -3 192 162 3 1742 300 53 0 0 chr5 151659425 151659463 -877796 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 3 1742 1474 57 0 50 chr5 151659463 151659624 -877635 - B2_Mm2 SINE B2 -34 161 1 3 1742 986 262 0 21 chr5 151659819 151660053 -877206 + B4A SINE B4 2 230 -62 3 1742 1211 48 0 20 chr5 151660055 151660205 -877054 + B1_Mus1 SINE Alu 2 148 0 3 1742 24 0 0 0 chr5 151660369 151660393 -876866 + AT_rich Low_complexity Low_complexity 1 24 0 3 1742 1940 135 87 8 chr5 151660437 151660795 -876464 - ORR1B1 LTR MaLR -8 386 1 3 1742 252 0 0 0 chr5 151660823 151660851 -876408 + (T)n Simple_repeat Simple_repeat 1 28 0 3 1742 1211 47 0 13 chr5 151660875 151661025 -876234 - B1_Mus1 SINE Alu 0 148 1 3 1742 673 258 115 0 chr5 151661044 151661226 -876033 - B3 SINE B2 -9 207 5 3 1742 836 312 131 29 chr5 151661230 151661947 -875312 + BLACKJACK DNA AcHobo 1465 2254 -690 3 1742 22 0 0 0 chr5 151661979 151662001 -875258 + AT_rich Low_complexity Low_complexity 1 22 0 3 1742 305 308 81 27 chr5 151662494 151662706 -874553 - MERVL_2A-int LTR ERVL -1842 3919 3662 3 1742 254 320 30 30 chr5 151663064 151663164 -874095 - MERVL_2A-int LTR ERVL -2543 3171 3072 3 1742 237 98 0 0 chr5 151663261 151663302 -873957 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 1742 22 0 0 0 chr5 151664367 151664389 -872870 + GC_rich Low_complexity Low_complexity 1 22 0 3 1742 1327 86 11 0 chr5 151664448 151664623 -872636 + B2_Mm1t SINE B2 2 178 -15 3 1742 326 178 0 76 chr5 151664650 151664729 -872530 + B2_Mm2 SINE B2 29 101 -94 3 1742 267 79 0 0 chr5 151664747 151664785 -872474 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 1742 2376 167 27 10 chr5 151666710 151667121 -870138 + MTC LTR MaLR 4 421 0 3 1742 452 346 73 6 chr5 151667136 151667313 -869946 - MLT1I LTR MaLR -91 320 132 3 1742 790 276 0 0 chr5 151667491 151667672 -869587 + Lx5 LINE L1 6870 7050 0 3 1742 241 272 103 52 chr5 151667836 151667933 -869326 - LTR40c LTR ERVL -83 382 281 3 1742 1220 163 29 0 chr5 151667969 151668178 -869081 - B3 SINE B2 0 216 2 3 1742 477 250 17 17 chr5 151668805 151668923 -868336 + L1MB1 LINE L1 5761 5878 -311 3 1742 1817 125 25 60 chr5 151668924 151669239 -868020 + ORR1A3 LTR MaLR 23 326 0 3 1742 371 243 0 1 chr5 151669239 151669334 -867925 + L1MA7 LINE L1 5918 6011 -301 3 1742 380 292 30 30 chr5 151669561 151669660 -867599 + B3 SINE B2 105 203 -13 3 1742 481 329 35 9 chr5 151669686 151669913 -867346 + L1MA7 LINE L1 6047 6279 -12 3 1742 229 310 32 89 chr5 151669936 151670060 -867199 + MLT1C LTR MaLR 64 180 -287 3 1742 455 336 56 17 chr5 151670778 151671011 -866248 - RMER15 LTR ERVL 0 575 334 3 1742 361 315 47 0 chr5 151671239 151671366 -865893 - MIRb SINE MIR -110 158 26 3 1742 182 390 24 0 chr5 151671519 151671601 -865658 + MIRc SINE MIR 8 91 -177 3 1742 308 200 12 0 chr5 151671605 151671685 -865574 + (TG)n Simple_repeat Simple_repeat 2 82 0 3 1742 245 51 26 0 chr5 151671687 151671726 -865533 + (GA)n Simple_repeat Simple_repeat 1 40 0 3 1742 2586 131 42 7 chr5 151673064 151673142 -864117 + RLTR28 LTR ERVL 1 86 -438 3 1742 228 35 0 0 chr5 151673142 151673171 -864088 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 1742 2586 131 42 7 chr5 151673171 151673524 -863735 + RLTR28 LTR ERVL 87 446 -78 3 1742 1438 183 104 123 chr5 151673536 151674096 -863163 + RLTR31_Mur LTR ERVK 1 549 -4 3 1742 366 290 229 23 chr5 151674116 151674136 -863123 - ID_B1 SINE B4 -46 246 151 3 1742 550 257 0 9 chr5 151674136 151674246 -863013 - PB1D10 SINE Alu 0 117 9 3 1742 366 290 229 23 chr5 151674246 151674259 -863000 - ID_B1 SINE B4 -46 150 77 3 1742 268 81 40 26 chr5 151674259 151674282 -862977 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 3 1742 1254 48 0 0 chr5 151674282 151674429 -862830 - B1_Mus1 SINE Alu 0 148 2 3 1742 268 81 40 26 chr5 151674429 151674481 -862778 + (TTTTTG)n Simple_repeat Simple_repeat 2 55 0 3 1742 259 271 153 20 chr5 151674617 151674715 -862544 - B3A SINE B2 -87 111 1 3 1742 270 0 0 0 chr5 151674881 151674911 -862348 + (A)n Simple_repeat Simple_repeat 1 30 0 3 1742 528 117 0 0 chr5 151674972 151675049 -862210 - URR1B DNA MER1_type 0 225 149 3 1742 249 33 0 0 chr5 151675052 151675082 -862177 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 3 1742 1268 83 6 0 chr5 151675084 151675253 -862006 - B2_Mm1t SINE B2 -23 170 1 3 1742 1035 165 0 0 chr5 151675253 151675410 -861849 - URR1B DNA MER1_type -69 156 1 3 1742 419 252 131 64 chr5 151675959 151676272 -860987 + RMER17C LTR ERVK 28 361 -49 3 1742 494 133 0 0 chr5 151676424 151676499 -860760 + RLTR16 LTR ERVK 1 75 -430 3 1742 1139 36 22 0 chr5 151676499 151676636 -860623 + B1_Mus1 SINE Alu 1 140 -8 3 1742 274 125 39 59 chr5 151676652 151676703 -860556 + RLTR16 LTR ERVK 60 109 -396 3 1742 1121 35 0 47 chr5 151676713 151676863 -860396 - B1_Mus1 SINE Alu 0 148 6 3 1742 245 175 0 0 chr5 151676867 151676907 -860352 + RLTR16 LTR ERVK 96 135 -370 3 1742 1777 201 34 20 chr5 151677632 151678085 -859174 + RMER15 LTR ERVL 35 557 -18 3 1742 284 280 52 10 chr5 151678324 151678427 -858832 + MLT1J LTR MaLR 30 178 -334 3 1742 1156 76 14 0 chr5 151678443 151678588 -858671 - B1_Mm SINE Alu 0 147 1 3 1742 279 333 116 48 chr5 151678657 151678846 -858413 + MLT1J LTR MaLR 308 509 -101 3 1742 1646 183 45 117 chr5 151680070 151680473 -856786 + ORR1D1 LTR MaLR 1 374 0 3 1742 251 250 0 73 chr5 151680604 151680686 -856573 + MER2 DNA MER2_type 93 168 -177 3 1742 451 355 91 0 chr5 151680710 151680896 -856363 + MER2 DNA MER2_type 143 345 0 3 1742 347 295 83 8 chr5 151681286 151681419 -855840 + ORR1E LTR MaLR 1 143 -216 3 1742 259 256 23 68 chr5 151681638 151681726 -855533 + MLT1A1 LTR MaLR 320 403 -5 3 1742 194 91 30 0 chr5 151682196 151682229 -855030 + (CAA)n Simple_repeat Simple_repeat 3 36 0 3 1742 2577 157 198 4 chr5 151682542 151683053 -854206 + RMER19C LTR ERVK 1 610 -1 3 1742 1077 279 18 82 chr5 151683096 151683424 -853835 + ORR1E LTR MaLR 1 307 -52 3 1742 292 246 0 0 chr5 151683467 151683532 -853727 + ORR1E LTR MaLR 315 379 0 3 1742 212 267 0 75 chr5 151683968 151684061 -853198 + (TATG)n Simple_repeat Simple_repeat 4 89 0 3 1742 1176 65 0 0 chr5 151684316 151684455 -852804 + B1_Mus1 SINE Alu 1 139 -9 3 1742 323 45 0 22 chr5 151684455 151684501 -852758 + (CAAAC)n Simple_repeat Simple_repeat 2 46 0 3 1742 807 152 0 0 chr5 151684501 151684665 -852594 + GA-rich Low_complexity Low_complexity 1 164 0 3 1742 302 326 34 0 chr5 151684775 151684864 -852395 - PB1D10 SINE Alu -20 97 6 3 1742 198 0 0 0 chr5 151684882 151684904 -852355 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3 1742 2784 168 44 10 chr5 151684920 151685424 -851835 - RLTR11A2 LTR ERVK 0 527 7 3 1742 1397 232 113 49 chr5 151687102 151687588 -849671 - RMER5 LTR ERV1 -16 518 2 3 1742 207 0 0 0 chr5 151687616 151687639 -849620 + (TTCTCC)n Simple_repeat Simple_repeat 3 25 0 3 1742 1228 87 4 8 chr5 151687646 151687892 -849367 + (TCC)n Simple_repeat Simple_repeat 1 244 0 3 1742 433 244 52 134 chr5 151687929 151688161 -849098 - ORR1E LTR MaLR -53 306 94 3 1742 2532 115 9 78 chr5 151688191 151688614 -848645 - ORR1B1 LTR MaLR 0 394 1 3 1742 513 236 0 99 chr5 151688615 151688756 -848503 - RSINE1 SINE B4 -38 127 1 3 1742 325 140 20 0 chr5 151688728 151688778 -848481 - B4A SINE B4 -74 218 168 3 1742 513 0 0 0 chr5 151688783 151688840 -848419 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 1742 258 32 0 0 chr5 151688840 151688870 -848389 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 1742 522 282 190 24 chr5 151688952 151689199 -848060 - MLT1A0 LTR MaLR 0 365 78 3 1742 868 254 79 20 chr5 151689209 151689470 -847789 + MTD LTR MaLR 1 272 -147 3 1742 2622 200 69 16 chr5 151689470 151689564 -847695 - RLTR20B3 LTR ERVK 0 577 483 3 1742 342 0 0 0 chr5 151689564 151689602 -847657 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 1742 2622 200 69 16 chr5 151689602 151690055 -847204 - RLTR20B3 LTR ERVK -95 482 3 3 1742 701 203 35 7 chr5 151690055 151690190 -847069 + MTD LTR MaLR 281 419 0 3 1742 270 328 111 7 chr5 151690895 151691030 -846229 - ORR1E LTR MaLR -210 149 1 3 1742 283 292 148 37 chr5 151691184 151691319 -845940 + L2a LINE L2 3277 3426 0 3 1742 821 181 0 0 chr5 151691811 151691944 -845315 + B1_Mur2 SINE Alu 2 134 -15 3 1742 213 39 0 0 chr5 151691946 151691972 -845287 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 3 1742 1197 75 0 0 chr5 151692017 151692164 -845095 + B1_Mm SINE Alu 1 147 0 3 1742 23 0 0 0 chr5 151692164 151692187 -845072 + AT_rich Low_complexity Low_complexity 1 23 0 3 1742 26 64 0 0 chr5 151692215 151692262 -844997 + AT_rich Low_complexity Low_complexity 1 47 0 4 1742 1301 157 137 23 chr5 151692492 151692890 -844369 - RMER17C LTR ERVK -517 441 19 4 1742 3498 31 63 9 chr5 151693018 151693446 -843813 - L1Md_F3 LINE L1 0 6584 6134 4 1742 631 250 61 0 chr5 151693813 151693961 -843298 + B3A SINE B2 3 159 -39 4 1742 460 247 25 139 chr5 151694287 151694334 -842925 + MER34A1 LTR ERV1 4 40 -547 4 1742 1813 152 75 18 chr5 151694334 151694722 -842537 - RMER17C LTR ERVK 0 410 1 4 1742 460 247 25 139 chr5 151694722 151694876 -842383 + MER34A1 LTR ERV1 41 182 -405 4 1742 369 149 0 56 chr5 151694975 151695046 -842213 - ORR1D2 LTR MaLR 0 370 304 4 1742 831 127 0 112 chr5 151695336 151695505 -841754 - B2_Mm2 SINE B2 -31 164 15 4 1742 972 238 27 31 chr5 151695557 151695864 -841395 + BGLII_B LTR ERVK 124 441 0 4 1742 1098 264 43 83 chr5 151695864 151696163 -841096 - ORR1D2 LTR MaLR -65 305 20 4 1742 512 265 130 19 chr5 151696290 151696505 -840754 + Tigger1 DNA MER2_type 2180 2418 0 4 1742 526 241 149 16 chr5 151697449 151697558 -839701 + MT2A LTR ERVL 309 462 -71 4 1742 477 0 0 0 chr5 151697558 151697611 -839648 + (TG)n Simple_repeat Simple_repeat 2 54 0 4 1742 526 232 158 7 chr5 151697611 151697658 -839601 + MT2A LTR ERVL 463 530 -3 4 1742 281 256 47 0 chr5 151697746 151697832 -839427 + (CA)n Simple_repeat Simple_repeat 1 90 0 4 1742 732 236 116 15 chr5 151698375 151698660 -838599 - ORR1D2 LTR MaLR 0 374 24 4 1742 2867 49 90 3 chr5 151698662 151699028 -838231 - MTB LTR MaLR -2 398 1 4 1742 618 51 0 0 chr5 151699037 151699115 -838144 - ORR1D2 LTR MaLR -260 147 70 4 1742 293 0 27 0 chr5 151699141 151699178 -838081 + (CA)n Simple_repeat Simple_repeat 1 38 0 4 1742 1227 242 19 15 chr5 151699200 151699460 -837799 - B4A SINE B4 -30 262 2 4 1742 1085 231 58 50 chr5 151699585 151699845 -837414 - MTE2b LTR MaLR -46 333 72 4 1742 272 188 159 34 chr5 151699883 151699971 -837288 - MLT1J LTR MaLR -181 331 233 4 1742 432 160 10 20 chr5 151700351 151700453 -836806 + GA-rich Low_complexity Low_complexity 3 103 0 4 1742 1221 106 0 0 chr5 151700454 151700634 -836625 + (GGAGAA)n Simple_repeat Simple_repeat 1 180 0 4 1742 275 111 545 34 chr5 151701706 151701794 -835465 - B2_Mm2 SINE B2 -14 181 49 4 1742 1381 73 11 0 chr5 151701847 151702024 -835235 - B2_Mm1t SINE B2 -14 179 1 4 1742 216 0 0 0 chr5 151702104 151702128 -835131 + (TG)n Simple_repeat Simple_repeat 2 25 0 4 1742 1736 218 67 26 chr5 151702326 151702707 -834552 + L1VL4 LINE L1 860 1253 -5404 4 1742 192 77 0 0 chr5 151702707 151702733 -834526 + (TAA)n Simple_repeat Simple_repeat 2 27 0 4 1742 1736 169 29 9 chr5 151702733 151703032 -834227 + L1VL4 LINE L1 1254 1559 -4318 4 1742 291 196 0 105 chr5 151703398 151703512 -833747 + GA-rich Low_complexity Low_complexity 3 104 0 4 1742 1001 121 0 20 chr5 151703947 151704088 -833171 + B1_Mur3 SINE Alu 1 139 -10 4 1742 281 47 0 23 chr5 151704088 151704132 -833127 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 4 1742 25 65 0 0 chr5 151704170 151704216 -833043 + AT_rich Low_complexity Low_complexity 1 46 0 4 1742 189 74 0 0 chr5 151704317 151704344 -832915 + (CCCCCA)n Simple_repeat Simple_repeat 3 29 0 4 1742 490 223 117 0 chr5 151705050 151705153 -832106 + B1_Mur1 SINE Alu 17 131 -18 4 1742 899 93 0 14 chr5 151705159 151705300 -831959 + (GGA)n Simple_repeat Simple_repeat 2 140 0 4 1742 358 352 38 16 chr5 151706376 151706561 -830698 + MER112 DNA MER1_type 2 190 -71 4 1742 1401 198 18 18 chr5 151706583 151706856 -830403 + MTD LTR MaLR 14 286 -133 4 1742 1825 153 84 43 chr5 151706844 151707167 -830092 - RMER13B LTR ERVK -9 899 582 4 1742 306 0 0 0 chr5 151707167 151707201 -830058 + (TGG)n Simple_repeat Simple_repeat 2 35 0 4 1742 1825 153 84 43 chr5 151707201 151707294 -829965 - RMER13B LTR ERVK -327 581 467 4 1742 641 264 36 57 chr5 151707298 151707584 -829675 + MTEb LTR MaLR 1 343 -36 4 1742 230 314 27 45 chr5 151707727 151707837 -829422 + MTEa LTR MaLR 272 379 0 4 1742 190 143 20 20 chr5 151709231 151709281 -827978 + CT-rich Low_complexity Low_complexity 2 51 0 4 1742 207 0 0 0 chr5 151709295 151709318 -827941 + (TCTG)n Simple_repeat Simple_repeat 2 24 0 4 1742 690 189 0 16 chr5 151710341 151710524 -826735 + (CA)n Simple_repeat Simple_repeat 1 180 0 4 1742 628 190 0 43 chr5 151710483 151710670 -826589 + (CATA)n Simple_repeat Simple_repeat 2 180 0 4 1742 270 176 0 0 chr5 151710761 151710812 -826447 + (CATA)n Simple_repeat Simple_repeat 2 52 0 4 1742 924 50 0 32 chr5 151710928 151711053 -826206 + B1_Mm SINE Alu 27 147 0 4 1742 225 94 0 0 chr5 151711053 151711085 -826174 + (A)n Simple_repeat Simple_repeat 1 32 0 4 1742 207 0 0 0 chr5 151711674 151711697 -825562 + (CTG)n Simple_repeat Simple_repeat 3 25 0 4 1742 414 0 0 0 chr5 151711697 151711743 -825516 + (TG)n Simple_repeat Simple_repeat 1 46 0 4 1742 1099 229 205 7 chr5 151711872 151712175 -825084 - ORR1D2 LTR MaLR -1 369 7 4 1742 1140 95 0 0 chr5 151712292 151712439 -824820 + B1_Mus2 SINE Alu 1 147 0 4 1742 216 0 0 0 chr5 151712439 151712463 -824796 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1742 426 39 0 0 chr5 151712489 151712541 -824718 + (TC)n Simple_repeat Simple_repeat 2 53 0 4 1742 294 29 0 0 chr5 151712944 151712979 -824280 + (T)n Simple_repeat Simple_repeat 1 35 0 4 1742 812 281 97 65 chr5 151713004 151713283 -823976 - L1MA9 LINE L1 -207 6105 5818 4 1742 1008 168 76 0 chr5 151713283 151713480 -823779 - B3 SINE B2 0 216 5 4 1742 812 281 97 65 chr5 151713480 151713528 -823731 - L1MA9 LINE L1 -495 5817 5783 4 1742 495 48 0 0 chr5 151713528 151713590 -823669 + (TTCTC)n Simple_repeat Simple_repeat 4 65 0 4 1742 1116 57 50 0 chr5 151713590 151713730 -823529 - B1_Mus1 SINE Alu -1 147 1 4 1742 812 281 97 65 chr5 151713730 151713936 -823323 - L1MA9 LINE L1 -530 5782 5554 4 1742 1484 64 37 0 chr5 151714066 151714253 -823006 + B2_Mm2 SINE B2 2 195 0 4 1742 256 311 89 59 chr5 151714940 151715142 -822117 - L2b LINE L2 -41 3334 3127 4 1742 461 301 7 29 chr5 151715614 151715751 -821508 + B1F1 SINE Alu 1 134 -15 4 1742 315 113 38 0 chr5 151715735 151715788 -821471 - U3 snRNA snRNA -162 55 1 4 1742 252 0 0 0 chr5 151715816 151715844 -821415 + (T)n Simple_repeat Simple_repeat 1 28 0 4 1742 1219 21 14 14 chr5 151715844 151715990 -821269 - B1_Mm SINE Alu 0 147 2 4 1742 891 232 18 36 chr5 151716149 151716368 -820891 - B3 SINE B2 0 216 2 4 1742 207 0 0 0 chr5 151716478 151716501 -820758 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 4 1742 690 175 11 6 chr5 151716829 151717007 -820252 + (TG)n Simple_repeat Simple_repeat 2 180 0 4 1742 633 289 25 6 chr5 151717030 151717190 -820069 - RSINE1 SINE B4 0 165 3 4 1742 1625 207 84 20 chr5 151717585 151717979 -819280 - MTD LTR MaLR 0 419 1 4 1742 363 315 73 12 chr5 151718023 151718187 -819072 - ERVL-E-int LTR ERVL -631 5036 4863 4 1742 267 331 71 19 chr5 151718722 151718876 -818383 - ERVL-E-int LTR ERVL -1378 4383 4222 4 1742 325 307 79 14 chr5 151718907 151719046 -818213 + Charlie1a DNA MER1_type 1308 1455 0 4 1742 2034 133 46 46 chr5 151719322 151719732 -817527 + RMER17C LTR ERVK 1 410 0 4 1742 999 112 0 0 chr5 151720468 151720647 -816612 + (TC)n Simple_repeat Simple_repeat 1 179 0 4 1742 1228 118 37 11 chr5 151721614 151721803 -815456 + B2_Mm2 SINE B2 2 195 0 4 1742 888 260 75 36 chr5 151722803 151723074 -814185 - L1MC LINE L1 -856 5290 5016 4 1742 1496 72 10 0 chr5 151723074 151723268 -813991 - L1_Mus1 LINE L1 -1 6566 6371 4 1742 888 260 75 36 chr5 151723268 151723355 -813904 - L1MC LINE L1 -1131 5015 4918 4 1742 255 203 0 0 chr5 151723405 151723469 -813790 + CT-rich Low_complexity Low_complexity 2 65 0 4 1742 704 244 72 6 chr5 151723594 151723775 -813484 + B3A SINE B2 2 194 -4 4 1742 326 210 8 25 chr5 151723939 151724061 -813198 + CT-rich Low_complexity Low_complexity 2 121 0 4 1742 1408 273 36 5 chr5 151724187 151724574 -812685 + Lx7 LINE L1 6916 7314 -382 4 1742 330 26 0 0 chr5 151724590 151724629 -812630 + (CA)n Simple_repeat Simple_repeat 2 40 0 4 1742 207 100 0 0 chr5 151724629 151724659 -812600 + (TG)n Simple_repeat Simple_repeat 1 30 0 4 1742 235 333 0 0 chr5 151725115 151725187 -812072 + C-rich Low_complexity Low_complexity 1 72 0 4 1742 1057 222 0 5 chr5 151725768 151725967 -811292 - B3 SINE B2 -4 212 15 4 1742 379 207 22 44 chr5 151726079 151726201 -811058 + MLT2D LTR ERVL 75 196 -268 4 1742 248 282 56 45 chr5 151726185 151726222 -811037 + MLT2D LTR ERVL 465 503 -57 4 1742 522 0 0 0 chr5 151726222 151726280 -810979 + (CA)n Simple_repeat Simple_repeat 2 59 0 4 1742 248 282 56 45 chr5 151726280 151726331 -810928 + MLT2D LTR ERVL 504 554 -6 4 1742 580 209 29 23 chr5 151726609 151726776 -810483 + ORR1D2 LTR MaLR 1 164 -206 4 1742 1918 184 41 63 chr5 151726747 151727141 -810118 + RLTR41 LTR ERV1 62 446 0 4 1742 947 228 135 4 chr5 151727141 151727369 -809890 + ORR1D2 LTR MaLR 113 370 0 4 1742 498 292 112 9 chr5 151727380 151727594 -809665 - LTR33 LTR ERVL -169 346 111 4 1742 831 93 0 0 chr5 151727913 151728031 -809228 + (TTC)n Simple_repeat Simple_repeat 3 120 0 4 1742 189 0 0 0 chr5 151728039 151728060 -809199 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 4 1742 384 88 12 35 chr5 151728067 151728142 -809117 - B2_Mm2 SINE B2 -94 122 47 4 1742 1256 84 34 6 chr5 151728171 151728350 -808909 - B2_Mm2 SINE B2 -11 184 1 4 1742 1674 242 27 19 chr5 151728360 151728726 -808533 - MTEa LTR MaLR -8 371 3 4 1742 306 189 56 42 chr5 151728919 151728991 -808268 - PB1D10 SINE Alu -3 114 42 4 1742 2859 74 154 0 chr5 151728991 151729452 -807807 - RLTR47_MM LTR ERV1 0 532 1 4 1742 2119 156 151 0 chr5 151729606 151729971 -807288 + MTC LTR MaLR 1 420 -1 4 1742 1302 107 112 28 chr5 151730454 151730703 -806556 + RLTR18 LTR ERVK 1 270 -346 4 1742 2164 125 7 87 chr5 151731068 151731514 -805745 - RMER17C LTR ERVK 0 410 1 4 1742 711 267 21 48 chr5 151732068 151732257 -805002 + B3 SINE B2 27 210 -6 4 1742 270 0 0 0 chr5 151732381 151732411 -804848 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 5 1742 1241 41 0 0 chr5 151733428 151733574 -803685 - B1_Mm SINE Alu 0 147 2 5 1742 1237 34 0 0 chr5 151734204 151734350 -802909 - B1_Mm SINE Alu 0 147 2 5 1742 229 306 126 13 chr5 151734571 151734730 -802529 + L1M5 LINE L1 5371 5547 -647 5 1742 996 248 63 13 chr5 151734828 151735065 -802194 - MTD LTR MaLR 0 419 171 5 1742 196 368 84 34 chr5 151735441 151735680 -801579 + L2c LINE L2 3136 3386 -1 5 1742 931 149 154 0 chr5 151735898 151736093 -801166 + URR1B DNA MER1_type 1 225 0 5 1742 894 296 84 32 chr5 151736257 151736568 -800691 + MER82 DNA MER2_type 8 334 -319 5 1742 556 294 14 0 chr5 151736571 151736714 -800545 + ID_B1 SINE B4 80 224 0 5 1742 246 309 35 35 chr5 151736594 151736735 -800524 - YREP_Mm Unknown Unknown -1518 294 154 5 1742 986 116 14 0 chr5 151736772 151736918 -800341 - URR1A DNA MER1_type -20 206 59 5 1742 3380 21 26 0 chr5 151737131 151737517 -799742 + MTA_Mm LTR MaLR 1 396 0 5 1742 575 282 72 63 chr5 151737562 151737785 -799474 - Tigger1 DNA MER2_type 0 2418 2194 5 1742 268 281 160 40 chr5 151737823 151737857 -799402 - B3A SINE B2 -6 192 151 5 1742 234 0 0 0 chr5 151737857 151737883 -799376 + (TG)n Simple_repeat Simple_repeat 1 26 0 5 1742 189 0 0 0 chr5 151737883 151737903 -799356 + (GA)n Simple_repeat Simple_repeat 1 21 0 5 1742 268 281 160 40 chr5 151737903 151737967 -799292 - B3A SINE B2 -48 150 82 5 1742 679 185 32 16 chr5 151740063 151740189 -797070 + B1_Mur4 SINE Alu 23 150 0 5 1742 315 263 137 127 chr5 151740601 151740964 -796295 + MLT1A0 LTR MaLR 11 405 -3 5 1742 346 242 78 39 chr5 151741561 151741664 -795595 - MLT1D LTR MaLR -292 213 107 5 1742 2960 136 65 14 chr5 151741679 151742170 -795089 + RMER20A LTR ERVK 1 516 0 5 1742 894 221 35 30 chr5 151742919 151743142 -794117 - MTD LTR MaLR -177 242 15 5 1742 333 0 0 0 chr5 151743533 151743570 -793689 + (TC)n Simple_repeat Simple_repeat 2 38 0 5 1742 945 155 0 20 chr5 151743660 151743811 -793448 + B1_Mus1 SINE Alu 1 148 0 5 1742 2419 179 85 64 chr5 151743832 151744397 -792862 + RLTR20B3 LTR ERVK 1 577 0 5 1742 223 196 157 0 chr5 151744406 151744457 -792802 + B3A SINE B2 1 59 -139 5 1742 558 108 0 0 chr5 151744463 151744546 -792713 + (TTCTCC)n Simple_repeat Simple_repeat 3 85 0 5 1742 675 69 0 0 chr5 151744557 151744644 -792615 - B2_Mm2 SINE B2 -108 87 1 5 1742 531 0 0 0 chr5 151744662 151744721 -792538 + (CA)n Simple_repeat Simple_repeat 2 60 0 5 1742 865 210 23 21 chr5 151744759 151744934 -792325 + B3 SINE B2 52 211 -5 5 1742 231 36 0 0 chr5 151744957 151744985 -792274 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5 1742 24 0 0 0 chr5 151745259 151745283 -791976 + AT_rich Low_complexity Low_complexity 1 24 0 5 1742 210 37 0 0 chr5 151745443 151745470 -791789 + (T)n Simple_repeat Simple_repeat 1 27 0 5 1742 1211 68 0 0 chr5 151745473 151745620 -791639 - B1_Mm SINE Alu 0 147 1 5 1742 24 53 0 0 chr5 151745632 151745670 -791589 + AT_rich Low_complexity Low_complexity 1 38 0 5 1742 4378 135 46 21 chr5 151745716 151745911 -791348 + RMER19A LTR ERVK 1 199 -538 5 1742 2697 202 199 40 chr5 151745911 151746690 -790569 + RMER13B LTR ERVK 2 904 -4 5 1742 4378 135 46 21 chr5 151746690 151747211 -790048 + RMER19A LTR ERVK 200 735 -2 5 1742 680 150 113 0 chr5 151747215 151747351 -789908 - Lx4B LINE L1 -47 7011 6768 5 1742 1409 41 0 3 chr5 151747413 151747706 -789553 + (TTC)n Simple_repeat Simple_repeat 1 292 0 5 1742 755 161 39 0 chr5 151748265 151748395 -788864 - B3 SINE B2 -1 215 81 5 1742 24 0 0 0 chr5 151748673 151748697 -788562 + AT_rich Low_complexity Low_complexity 1 24 0 5 1742 21 0 0 0 chr5 151748938 151748959 -788300 + AT_rich Low_complexity Low_complexity 1 21 0 5 1742 249 143 27 54 chr5 151749341 151749415 -787844 + T-rich Low_complexity Low_complexity 2 73 0 5 1742 2158 183 35 25 chr5 151749504 151749907 -787352 - MTD LTR MaLR 0 419 13 5 1742 1279 81 29 0 chr5 151750116 151750290 -786969 + B2_Mm1t SINE B2 1 179 -14 5 1742 460 76 380 28 chr5 151750304 151750412 -786847 + B2_Mm2 SINE B2 50 195 0 5 1742 299 25 25 0 chr5 151750769 151750809 -786450 + (TC)n Simple_repeat Simple_repeat 2 42 0 5 1742 1272 34 0 0 chr5 151750820 151750967 -786292 - B1_Mm SINE Alu 0 147 1 5 1742 316 335 36 54 chr5 151751316 151751395 -785864 - RMER10B LTR ERVL 0 398 321 5 1742 2201 198 50 29 chr5 151751395 151751941 -785318 - RLTR31B_Mm LTR ERVK 0 557 1 5 1742 316 335 36 54 chr5 151751941 151752028 -785231 - RMER10B LTR ERVL -78 320 235 5 1742 534 326 36 48 chr5 151752375 151752623 -784636 - B4A SINE B4 -47 245 1 5 1742 243 0 0 0 chr5 151752827 151752854 -784405 + (CA)n Simple_repeat Simple_repeat 2 28 0 5 1742 22 35 0 0 chr5 151753460 151753489 -783770 + AT_rich Low_complexity Low_complexity 1 29 0 5 1742 704 153 0 18 chr5 151753547 151753660 -783599 - B3 SINE B2 -104 112 2 5 1742 219 36 0 0 chr5 151754252 151754280 -782979 + (CATA)n Simple_repeat Simple_repeat 3 30 0 5 1742 215 220 0 0 chr5 151755318 151755368 -781891 + (CTG)n Simple_repeat Simple_repeat 2 51 0 5 1742 1911 170 107 36 chr5 151758605 151758989 -778270 - MTC LTR MaLR -8 413 3 5 1742 214 282 203 8 chr5 151759155 151759273 -777986 + L2 LINE L2 2339 2479 -940 5 1742 726 141 0 0 chr5 151759323 151759451 -777808 + (TCCC)n Simple_repeat Simple_repeat 4 131 0 5 1742 314 229 15 27 chr5 151759451 151759553 -777706 - ID2 SINE ID -39 113 10 5 1742 263 80 40 0 chr5 151759818 151759868 -777391 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 5 1742 771 254 29 0 chr5 151759936 151760141 -777118 + B3 SINE B2 2 212 -4 5 1742 635 251 20 71 chr5 151760748 151760945 -776314 + B3A SINE B2 2 188 -10 5 1742 570 284 83 39 chr5 151761338 151761537 -775722 - B3A SINE B2 -2 214 8 5 1742 2321 71 26 0 chr5 151761920 151762229 -775030 - ORR1A2 LTR MaLR -10 317 1 5 1742 436 213 64 9 chr5 151762672 151762781 -774478 + MLT1A1 LTR MaLR 294 408 0 5 1742 1490 221 70 62 chr5 151764866 151765089 -772170 + MTD LTR MaLR 1 218 -201 5 1742 3070 149 7 44 chr5 151765089 151765637 -771622 - RLTR11A LTR ERVK 0 528 1 5 1742 1490 221 70 62 chr5 151765637 151765829 -771430 + MTD LTR MaLR 219 419 0 5 1742 455 317 51 36 chr5 151765926 151766122 -771137 + MLT1H2 LTR MaLR 21 219 -270 5 1742 405 348 17 17 chr5 151766184 151766304 -770955 - LTR16B LTR ERVL -343 120 1 5 1742 315 276 81 0 chr5 151766304 151766427 -770832 + HAL1 LINE L1 1531 1663 -844 5 1742 10728 129 47 7 chr5 151766436 151769184 -768075 + L1VL2 LINE L1 421 3288 -2595 5 1742 1051 86 0 48 chr5 151769571 151769718 -767541 - B1_Mus1 SINE Alu -7 141 2 5 1742 257 227 43 57 chr5 151769933 151770003 -767256 + HAL1 LINE L1 1659 1727 -780 5 1742 238 231 115 69 chr5 151770180 151770310 -766949 + HAL1 LINE L1 1995 2130 -377 5 1742 1159 188 14 0 chr5 151770609 151770822 -766437 - B3 SINE B2 0 216 1 5 1742 523 200 261 14 chr5 151771496 151771638 -765621 + B3 SINE B2 5 181 -35 5 1742 306 0 0 0 chr5 151772035 151772069 -765190 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5 1742 999 203 19 5 chr5 151774103 151774311 -762948 - B3 SINE B2 -1 215 5 5 1742 24 0 0 0 chr5 151774424 151774448 -762811 + AT_rich Low_complexity Low_complexity 1 24 0 5 1742 802 196 0 13 chr5 151774448 151774598 -762661 - B1_Mur3 SINE Alu -1 148 1 5 1742 192 338 0 14 chr5 151774977 151775049 -762210 - L2 LINE L2 -1789 1630 1560 5 1742 1818 210 55 28 chr5 151775339 151775350 -761909 + MTD LTR MaLR 3 13 -406 5 1742 245 29 29 0 chr5 151775350 151775384 -761875 + (TTG)n Simple_repeat Simple_repeat 2 36 0 5 1742 1818 210 55 28 chr5 151775384 151775769 -761490 + MTD LTR MaLR 14 410 -9 5 1742 548 248 9 32 chr5 151775835 151775992 -761267 + MTC LTR MaLR 256 407 0 5 1742 659 273 115 37 chr5 151776005 151776275 -760984 + B4 SINE B4 2 292 0 5 1742 630 186 0 0 chr5 151776277 151776499 -760760 + (CA)n Simple_repeat Simple_repeat 1 222 0 5 1742 641 185 6 0 chr5 151776529 151776707 -760552 + (CA)n Simple_repeat Simple_repeat 1 179 0 5 1742 250 186 0 106 chr5 151777692 151777758 -759501 + L2 LINE L2 2686 2744 -675 5 1742 1759 226 47 69 chr5 151778660 151779047 -758212 + RMER19C LTR ERVK 88 477 -134 5 1742 1199 55 0 7 chr5 151779047 151779194 -758065 + B1_Mus2 SINE Alu 2 147 0 5 1742 201 39 0 0 chr5 151779199 151779225 -758034 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5 1742 1759 226 47 69 chr5 151779225 151779367 -757892 + RMER19C LTR ERVK 478 611 0 5 1742 1895 156 92 11 chr5 151779421 151779778 -757481 + ORR1B1 LTR MaLR 1 386 -8 5 1742 818 243 218 31 chr5 151779943 151780296 -756963 + MTD LTR MaLR 1 419 0 5 1742 6754 81 68 38 chr5 151780455 151780604 -756655 - RLTR13D5 LTR ERVK 0 1033 873 5 1742 1160 62 7 0 chr5 151780604 151780749 -756510 - B1_Mm SINE Alu -1 146 1 5 217 6754 57 15 36 chr5 151780749 151781615 -755644 - RLTR13D5 LTR ERVK -145 878 1 5 1743 219 322 17 0 chr5 151781749 151781808 -755451 - ID4 SINE ID -18 65 6 5 1743 228 67 0 0 chr5 151782774 151782804 -754455 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 5 1743 420 144 27 55 chr5 151783813 151783996 -753263 + (CA)n Simple_repeat Simple_repeat 1 178 0 5 1743 1157 163 50 0 chr5 151784773 151784975 -752284 - B3 SINE B2 0 216 5 5 1743 1419 152 9 0 chr5 151786063 151786286 -750973 - URR1B DNA MER1_type 0 225 1 5 1743 438 306 62 50 chr5 151788044 151788285 -748974 - Lx8 LINE L1 -30 7443 7200 5 1743 958 148 0 11 chr5 151788309 151788487 -748772 + CT-rich Low_complexity Low_complexity 1 176 0 5 1743 342 247 273 0 chr5 151788525 151788679 -748580 - Lx8 LINE L1 -312 7161 6966 5 1743 1132 101 7 0 chr5 151788832 151788981 -748278 + B1_Mur4 SINE Alu 1 150 0 5 1743 375 169 0 0 chr5 151788996 151789067 -748192 + (TG)n Simple_repeat Simple_repeat 2 72 0 5 1743 22 0 0 0 chr5 151789748 151789770 -747489 + AT_rich Low_complexity Low_complexity 1 22 0 6 1743 225 0 0 0 chr5 151790011 151790036 -747223 + (T)n Simple_repeat Simple_repeat 1 25 0 6 1743 203 214 17 67 chr5 151790099 151790159 -747100 + C-rich Low_complexity Low_complexity 2 58 0 6 1743 858 125 96 0 chr5 151790282 151790418 -746841 - B1_Mur4 SINE Alu -1 149 1 6 1743 922 173 0 6 chr5 151790633 151790790 -746469 + B3 SINE B2 2 157 -59 6 1743 360 0 0 0 chr5 151790790 151790830 -746429 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 6 1743 231 88 0 0 chr5 151792198 151792232 -745027 + (AGGGGG)n Simple_repeat Simple_repeat 3 36 0 6 1743 429 70 0 0 chr5 151792304 151792361 -744898 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 6 1743 238 246 107 18 chr5 151792600 151792712 -744547 - Lx8 LINE L1 -6 7467 7346 6 1743 417 127 59 7 chr5 151792723 151792858 -744401 + (CA)n Simple_repeat Simple_repeat 2 143 0 6 1743 573 309 76 23 chr5 151792861 151793192 -744067 - Lx9 LINE L1 -128 7516 7036 6 1743 291 189 19 0 chr5 151793304 151793357 -743902 + (TG)n Simple_repeat Simple_repeat 1 54 0 6 1743 812 192 11 0 chr5 151793357 151793534 -743725 + (TATG)n Simple_repeat Simple_repeat 2 180 0 6 1743 231 235 140 49 chr5 151793746 151793889 -743370 - L1M1 LINE L1 -441 5859 5704 6 1743 502 107 12 0 chr5 151795167 151795251 -742008 - B2_Mm2 SINE B2 -88 107 23 6 1743 27 87 0 0 chr5 151795968 151796037 -741222 + AT_rich Low_complexity Low_complexity 1 69 0 6 1743 191 61 30 0 chr5 151796119 151796152 -741107 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 6 1743 607 72 0 0 chr5 151796153 151796236 -741023 - B1_Mm SINE Alu 0 147 65 6 1743 328 236 160 0 chr5 151796545 151796640 -740619 + PB1D7 SINE Alu 6 115 -12 6 1743 332 327 46 35 chr5 151797086 151797260 -739999 - MLT1A LTR MaLR -177 197 22 6 1743 687 258 185 15 chr5 151797394 151797654 -739605 - ORR1E LTR MaLR -5 354 51 6 1743 349 298 1 1 chr5 151797666 151797768 -739491 - ORR1E-int LTR MaLR -36 1544 1454 6 1743 1358 127 39 0 chr5 151797785 151797990 -739269 - B3 SINE B2 0 216 4 6 1743 240 250 0 0 chr5 151799026 151799086 -738173 + G-rich Low_complexity Low_complexity 5 64 0 6 1743 759 160 0 0 chr5 151799422 151799597 -737662 + (TG)n Simple_repeat Simple_repeat 2 176 0 6 1743 207 0 0 0 chr5 151799637 151799660 -737599 + (C)n Simple_repeat Simple_repeat 1 23 0 6 1743 275 265 0 139 chr5 151799664 151799743 -737516 - BC1_Mm scRNA scRNA -82 70 3 6 1743 678 270 46 28 chr5 151799758 151799975 -737284 - ID_B1 SINE B4 -2 222 2 6 1743 191 273 18 0 chr5 151800199 151800254 -737005 - MER5B DNA MER1_type 0 178 123 6 1743 658 236 7 0 chr5 151800375 151800515 -736744 - B1F SINE Alu -7 142 2 6 1743 1440 204 37 133 chr5 151800549 151800687 -736572 + ORR1D2 LTR MaLR 3 135 -235 6 1743 222 37 0 0 chr5 151800687 151800714 -736545 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 6 1743 1121 95 0 0 chr5 151800724 151800872 -736387 - B1_Mus1 SINE Alu 0 148 1 6 1743 1440 204 37 133 chr5 151800872 151801129 -736130 + ORR1D2 LTR MaLR 136 370 0 6 1743 2581 121 28 21 chr5 151801192 151801614 -735645 - RLTR23 LTR ERV1 0 430 6 6 1743 1275 303 34 22 chr5 151802565 151803067 -734192 - MuRRS4-int LTR ERV1 -1029 4034 3527 6 1743 300 352 0 0 chr5 151804127 151804249 -733010 - MMERGLN-int LTR ERV1 -3134 4422 4301 6 1743 1101 333 44 39 chr5 151804235 151804695 -732564 - MuRRS4-int LTR ERV1 -3310 4246 3805 6 1743 582 15 0 0 chr5 151804695 151804762 -732497 + (TG)n Simple_repeat Simple_repeat 1 67 0 6 1743 1101 326 57 50 chr5 151804762 151805345 -731914 - MuRRS4-int LTR ERV1 -3752 3804 2982 6 1743 593 278 97 42 chr5 151805594 151806005 -731254 - MuRRS4-int LTR ERV1 -5823 1733 1159 6 1743 2377 99 67 22 chr5 151806703 151807106 -730153 - RLTR23 LTR ERV1 0 430 10 6 1743 212 0 36 0 chr5 151807520 151807548 -729711 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 6 1743 943 98 0 27 chr5 151807548 151807695 -729564 + B1_Mus1 SINE Alu 6 148 0 6 1743 275 222 0 12 chr5 151807986 151808068 -729191 + GA-rich Low_complexity Low_complexity 2 82 0 6 1743 1184 68 0 0 chr5 151808288 151808435 -728824 - B1_Mm SINE Alu 0 147 1 6 1743 423 0 0 0 chr5 151809263 151809310 -727949 + (TA)n Simple_repeat Simple_repeat 1 47 0 6 1743 694 98 18 15 chr5 151809541 151809658 -727601 - B1_Mus2 SINE Alu 0 147 2 6 1743 21 0 0 0 chr5 151809872 151809893 -727366 + AT_rich Low_complexity Low_complexity 1 21 0 6 1743 1024 44 0 7 chr5 151811934 151812071 -725188 - B2_Mm2 SINE B2 -20 175 40 6 1743 448 272 95 118 chr5 151812484 151812705 -724554 + B3 SINE B2 1 216 0 6 1743 1408 200 129 9 chr5 151812712 151813045 -724214 + MTD LTR MaLR 1 373 -46 6 1743 1225 34 0 0 chr5 151813477 151813624 -723635 + B1_Mm SINE Alu 1 147 0 6 1743 1015 281 75 15 chr5 151814174 151814507 -722752 + ORR1E LTR MaLR 1 353 -6 6 1743 363 211 0 0 chr5 151814884 151814955 -722304 + B3A SINE B2 4 74 -124 6 1743 353 349 72 0 chr5 151815016 151815168 -722091 + Lx8 LINE L1 7113 7275 -198 6 1743 325 217 0 53 chr5 151815225 151815415 -721844 + (CA)n Simple_repeat Simple_repeat 1 180 0 6 1743 345 246 0 0 chr5 151815426 151815597 -721662 + (CA)n Simple_repeat Simple_repeat 2 172 0 6 1743 447 127 114 0 chr5 151816145 151816224 -721035 + B1_Mur3 SINE Alu 2 89 -60 6 1743 2251 199 42 44 chr5 151816225 151816676 -720583 + RLTR20A LTR ERVK 1 439 -102 6 1743 237 33 0 0 chr5 151816676 151816706 -720553 + (TG)n Simple_repeat Simple_repeat 2 31 0 6 1743 2251 199 42 44 chr5 151816706 151816796 -720463 + RLTR20A LTR ERVK 440 540 -1 6 1743 2990 84 19 84 chr5 151817198 151817719 -719540 - RLTR1C LTR ERV1 -16 487 1 6 1743 217 278 0 143 chr5 151817972 151818056 -719203 + B1F2 SINE Alu 20 91 -58 6 1743 244 246 16 47 chr5 151818007 151818071 -719188 + ID_B1 SINE B4 152 213 -11 6 1743 1193 54 0 7 chr5 151818246 151818395 -718864 + B1_Mus1 SINE Alu 1 148 0 6 1743 632 258 46 13 chr5 151818922 151819075 -718184 + RSINE1 SINE B4 4 161 -4 6 1743 1485 51 6 0 chr5 151819116 151819292 -717967 + B2_Mm1t SINE B2 2 178 -15 6 1743 284 48 24 0 chr5 151819295 151819337 -717922 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 6 1743 1043 187 50 0 chr5 151819345 151819543 -717716 + B3 SINE B2 2 209 -7 6 1743 650 283 63 90 chr5 151819676 151819939 -717320 + ORR1E LTR MaLR 1 264 -95 6 1743 1705 164 139 57 chr5 151819939 151820121 -717138 - MTC LTR MaLR 0 421 236 6 1743 1207 48 0 0 chr5 151820121 151820267 -716992 - B1_Mus2 SINE Alu 0 147 2 6 1743 1705 164 139 57 chr5 151820267 151820460 -716799 - MTC LTR MaLR -186 235 13 6 1743 1199 96 57 0 chr5 151820460 151820637 -716622 + B2_Mm2 SINE B2 2 188 -7 6 1743 1705 164 139 57 chr5 151820637 151820649 -716610 - MTC LTR MaLR -409 12 1 6 1743 650 283 63 90 chr5 151820649 151820750 -716509 + ORR1E LTR MaLR 265 355 -4 6 1743 252 0 0 0 chr5 151820756 151820784 -716475 + (GGCTG)n Simple_repeat Simple_repeat 4 31 0 6 1743 3021 142 50 97 chr5 151820803 151821404 -715855 + RMER15 LTR ERVL 1 573 -2 6 1743 544 187 16 0 chr5 151821436 151821559 -715700 + GA-rich Low_complexity Low_complexity 2 126 0 6 1743 642 230 104 22 chr5 151822246 151822342 -714917 + B3A SINE B2 1 98 -100 6 1743 315 49 0 0 chr5 151822342 151822383 -714876 + (CA)n Simple_repeat Simple_repeat 1 41 0 6 1743 642 230 104 22 chr5 151822383 151822468 -714791 + B3A SINE B2 99 197 -1 6 1743 180 0 0 0 chr5 151822715 151822735 -714524 + (CA)n Simple_repeat Simple_repeat 2 21 0 6 1743 1221 54 0 0 chr5 151823888 151824035 -713224 - B1_Mus1 SINE Alu 0 148 2 6 1743 28 0 0 0 chr5 151824035 151824063 -713196 + AT_rich Low_complexity Low_complexity 1 28 0 6 1743 1097 178 151 189 chr5 151824074 151824551 -712708 + RMER6B LTR ERVK 3 461 0 6 1743 335 333 24 36 chr5 151824562 151824730 -712529 + L1M4 LINE L1 5438 5603 -575 6 1743 1981 127 14 84 chr5 151826603 151827042 -710217 - RMER17C LTR ERVK -2 408 1 6 1743 244 258 76 33 chr5 151827217 151827309 -709950 + MLT2B3 LTR ERVL 6 101 -453 6 1743 3288 36 23 0 chr5 151827378 151827765 -709494 + MTA_Mm LTR MaLR 1 396 0 6 1743 672 227 302 14 chr5 151828375 151828681 -708578 + MTD LTR MaLR 6 405 -14 6 1743 216 86 0 0 chr5 151829487 151829522 -707737 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 6 1743 345 207 98 0 chr5 151830288 151830370 -706889 + MTD LTR MaLR 20 109 -310 6 1743 1912 120 47 37 chr5 151830370 151830776 -706483 - RMER17C LTR ERVK 0 410 1 6 1743 954 222 152 15 chr5 151830780 151831050 -706209 + MTD LTR MaLR 108 414 -5 6 1743 297 110 36 72 chr5 151831057 151831224 -706035 + (TATAA)n Simple_repeat Simple_repeat 2 162 0 6 1743 279 0 0 0 chr5 151831572 151831603 -705656 + (GA)n Simple_repeat Simple_repeat 1 31 0 6 1743 372 59 0 0 chr5 151832211 151832262 -704997 + (CA)n Simple_repeat Simple_repeat 1 51 0 6 1743 504 272 199 23 chr5 151832727 151832997 -704262 - MLT2B2 LTR ERVL -77 438 123 6 1743 300 310 102 56 chr5 151833489 151833704 -703555 + ORR1D2 LTR MaLR 5 229 -141 6 1743 216 0 0 0 chr5 151835114 151835138 -702121 + (TGG)n Simple_repeat Simple_repeat 3 26 0 6 1743 923 116 8 0 chr5 151835138 151835267 -701992 + B1_Mus2 SINE Alu 18 147 0 6 1743 537 276 79 26 chr5 151835804 151835994 -701265 - MER82 DNA MER2_type -450 203 4 6 1743 488 266 73 36 chr5 151836479 151836650 -700609 - RLTR41 LTR ERV1 -33 499 273 6 1743 1139 68 0 14 chr5 151836650 151836798 -700461 - B1_Mm SINE Alu 0 147 2 6 1743 433 281 177 76 chr5 151836798 151836959 -700300 - RLTR41 LTR ERV1 -202 330 152 6 1743 495 0 0 0 chr5 151837974 151838029 -699230 + (TG)n Simple_repeat Simple_repeat 1 55 0 6 1743 201 39 0 0 chr5 151838087 151838113 -699146 + (T)n Simple_repeat Simple_repeat 1 26 0 6 1743 805 236 14 58 chr5 151838402 151838609 -698650 + B3A SINE B2 1 198 0 6 1743 4644 143 26 16 chr5 151838658 151839418 -697841 + Lx5 LINE L1 6283 7050 0 6 1743 21 57 0 0 chr5 151839655 151839690 -697569 + AT_rich Low_complexity Low_complexity 1 35 0 6 1743 775 269 21 5 chr5 151839744 151839931 -697328 - B3 SINE B2 -25 191 2 7 1743 21 57 0 0 chr5 151840196 151840231 -697028 + AT_rich Low_complexity Low_complexity 1 35 0 7 1743 311 221 119 52 chr5 151840457 151840591 -696668 + MER5A1 DNA MER1_type 1 143 -23 7 1743 1023 110 0 0 chr5 151842575 151842720 -694539 + B1_Mur4 SINE Alu 5 149 -1 7 1743 566 283 11 83 chr5 151842952 151843133 -694126 + B4A SINE B4 124 291 -1 7 1743 409 272 89 58 chr5 151843218 151843409 -693850 + L1MA7 LINE L1 5599 5795 -496 7 1743 455 218 72 39 chr5 151843435 151843588 -693671 - CYRA11_Mm Unknown Y-chromosome -288 329 172 7 1743 943 81 29 0 chr5 151843453 151843589 -693670 + URR1B DNA MER1_type 86 225 0 7 1743 201 175 0 0 chr5 151843590 151843630 -693629 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 7 1743 559 269 0 24 chr5 151843688 151843852 -693407 + L1MA7 LINE L1 5880 6039 -252 7 1743 1211 90 102 0 chr5 151844053 151844230 -693029 - B2_Mm2 SINE B2 0 195 1 7 1743 230 287 20 69 chr5 151845714 151845815 -691444 + MLT1A1 LTR MaLR 291 386 -22 7 1743 944 296 55 25 chr5 151846123 151846397 -690862 + B4 SINE B4 8 289 -3 7 1743 251 190 17 0 chr5 151846406 151846464 -690795 + CT-rich Low_complexity Low_complexity 2 60 0 7 1743 360 0 0 0 chr5 151849039 151849079 -688180 + (CA)n Simple_repeat Simple_repeat 1 40 0 7 1743 381 151 0 0 chr5 151849079 151849165 -688094 + GA-rich Low_complexity Low_complexity 1 86 0 7 1743 1215 61 0 0 chr5 151853094 151853241 -684018 - B1_Mus2 SINE Alu 0 147 1 7 1743 875 251 11 5 chr5 151854690 151854874 -682385 + B3 SINE B2 2 186 -30 7 1743 21 0 0 0 chr5 151855401 151855422 -681837 + AT_rich Low_complexity Low_complexity 1 21 0 7 1743 225 94 0 0 chr5 151856572 151856604 -680655 + (A)n Simple_repeat Simple_repeat 1 32 0 7 1743 989 187 0 21 chr5 151858099 151858290 -678969 + B3 SINE B2 29 215 -1 7 1743 251 393 63 53 chr5 151860168 151860579 -676680 - L4 LINE RTE 0 2029 1615 7 1743 263 252 95 87 chr5 151861121 151861247 -676012 - L4 LINE RTE -1538 491 365 7 1743 333 0 0 0 chr5 151863725 151863762 -673497 + (CA)n Simple_repeat Simple_repeat 1 37 0 7 1743 604 155 4 58 chr5 151863775 151864043 -673216 + GA-rich Low_complexity Low_complexity 1 253 0 7 1743 1083 205 14 14 chr5 151864589 151864802 -672457 + B3 SINE B2 4 216 0 7 1743 258 185 43 22 chr5 151866383 151866521 -670738 + (TA)n Simple_repeat Simple_repeat 1 141 0 7 1743 308 24 24 0 chr5 151866535 151866576 -670683 + (CA)n Simple_repeat Simple_repeat 1 42 0 7 1743 23 33 0 0 chr5 151866585 151866615 -670644 + AT_rich Low_complexity Low_complexity 1 30 0 7 1743 21 57 0 0 chr5 151866646 151866681 -670578 + AT_rich Low_complexity Low_complexity 1 35 0 7 1743 45 0 0 0 chr5 151866707 151866752 -670507 + AT_rich Low_complexity Low_complexity 1 45 0 7 1743 313 238 140 64 chr5 151866752 151866909 -670350 - L1ME4a LINE L1 -138 5986 5818 7 1743 23 0 0 0 chr5 151866933 151866956 -670303 + AT_rich Low_complexity Low_complexity 1 23 0 7 1743 399 21 0 0 chr5 151868225 151868273 -668986 + (CA)n Simple_repeat Simple_repeat 2 49 0 7 1743 216 0 0 0 chr5 151868541 151868565 -668694 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 7 1743 710 111 7 36 chr5 151869049 151869189 -668070 + GA-rich Low_complexity Low_complexity 2 137 0 7 1743 204 97 0 0 chr5 151869584 151869615 -667644 + (CAAG)n Simple_repeat Simple_repeat 4 34 0 7 1743 1742 120 55 7 chr5 151870254 151870650 -666609 + RLTR16 LTR ERVK 1 505 0 7 1743 218 314 81 11 chr5 151871183 151871270 -665989 + B3 SINE B2 9 101 -115 7 1743 230 178 0 0 chr5 151871617 151871662 -665597 - B3 SINE B2 0 216 172 7 1743 185 0 40 0 chr5 151872136 151872161 -665098 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 7 1743 506 299 31 11 chr5 151874566 151874717 -662542 + ID_B1 SINE B4 90 244 -48 7 1743 324 250 8 84 chr5 151875479 151875610 -661649 + (TG)n Simple_repeat Simple_repeat 2 122 0 7 1743 449 264 153 49 chr5 151875620 151875803 -661456 - B3 SINE B2 -13 203 2 7 1743 318 329 91 60 chr5 151876396 151876661 -660598 + MLT1A0 LTR MaLR 21 293 -72 7 1743 198 0 0 0 chr5 151877274 151877296 -659963 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1743 315 328 77 74 chr5 151877382 151877692 -659567 - HAL1 LINE L1 -212 2295 1985 7 1743 868 224 66 0 chr5 151877965 151878148 -659111 - B3 SINE B2 -21 195 1 7 1743 241 314 93 56 chr5 151878284 151878500 -658759 + RMER17C LTR ERVK 138 361 -49 7 1743 444 275 49 16 chr5 151880059 151880279 -656980 + L1M5 LINE L1 5265 5491 -683 7 1743 836 258 66 0 chr5 151880279 151880477 -656782 + B3 SINE B2 1 211 -5 7 1743 895 322 88 19 chr5 151880496 151881129 -656130 + L1MC1 LINE L1 4649 5325 -821 7 1743 285 289 50 85 chr5 151881197 151881355 -655904 + B3 SINE B2 2 188 -28 7 1743 2191 138 176 41 chr5 151881355 151881748 -655511 + RLTR41 LTR ERV1 1 446 0 7 1743 285 273 37 97 chr5 151881748 151881766 -655493 + B3 SINE B2 189 205 -11 7 1743 702 227 0 3 chr5 151881769 151882097 -655162 + (CA)n Simple_repeat Simple_repeat 1 326 0 7 1743 351 246 0 0 chr5 151882153 151882332 -654927 + (CA)n Simple_repeat Simple_repeat 2 180 0 7 1743 1261 274 202 22 chr5 151882350 151883182 -654077 + L1MC1 LINE L1 5352 6333 0 7 1743 569 114 299 0 chr5 151883447 151883584 -653675 - URR1B DNA MER1_type -2 223 46 7 1743 1279 109 16 21 chr5 151883792 151883979 -653280 + B2_Mm2 SINE B2 1 186 -9 7 1743 793 70 49 7 chr5 151884028 151884171 -653088 - RMER17B LTR ERVK -498 460 312 7 1743 1559 125 4 4 chr5 151884747 151884972 -652287 - URR1B DNA MER1_type 0 225 1 7 1743 817 249 55 5 chr5 151885997 151886199 -651060 + B3 SINE B2 1 212 -4 7 1743 8402 202 77 40 chr5 151886225 151888183 -649076 + Lx7 LINE L1 5666 7696 0 7 1743 675 221 76 0 chr5 151888606 151888737 -648522 + B1_Mur1 SINE Alu 2 142 -7 7 1743 213 178 0 0 chr5 151888737 151888782 -648477 + GA-rich Low_complexity Low_complexity 1 45 0 7 1743 21 0 0 0 chr5 151889325 151889346 -647913 + AT_rich Low_complexity Low_complexity 1 21 0 7 1743 441 0 0 0 chr5 151889996 151890045 -647214 + (GA)n Simple_repeat Simple_repeat 1 49 0 7 1743 1043 195 48 10 chr5 151890096 151890303 -646956 - B3 SINE B2 -1 215 1 7 1743 403 295 0 58 chr5 151891483 151891620 -645639 + RSINE1 SINE B4 2 130 -35 7 1743 797 239 0 41 chr5 151892304 151892474 -644785 + RSINE1 SINE B4 3 165 0 7 1743 457 275 126 53 chr5 151892679 151893218 -644041 + L1ME1 LINE L1 5129 5699 -480 7 1743 471 301 51 9 chr5 151893266 151893481 -643778 + L1ME1 LINE L1 5810 6033 -146 7 1743 465 115 0 0 chr5 151893916 151893994 -643265 + (TATG)n Simple_repeat Simple_repeat 4 81 0 7 1743 641 237 58 0 chr5 151894001 151894140 -643119 - RSINE1 SINE B4 -16 149 3 7 1743 198 0 0 0 chr5 151894249 151894271 -642988 + (T)n Simple_repeat Simple_repeat 1 22 0 7 1743 224 154 37 37 chr5 151895042 151895096 -642163 + CT-rich Low_complexity Low_complexity 2 55 0 7 1743 752 83 9 0 chr5 151895830 151895939 -641320 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 7 1743 1332 110 0 20 chr5 151896523 151896718 -640541 + B2_Mm2 SINE B2 3 193 -2 7 1743 548 111 0 11 chr5 151896914 151897005 -640254 + (TA)n Simple_repeat Simple_repeat 1 90 0 7 1743 1757 196 69 3 chr5 151897176 151897565 -639694 + MTD LTR MaLR 4 418 -1 7 1743 261 0 0 0 chr5 151897656 151897685 -639574 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 7 1743 882 17 0 87 chr5 151897688 151897939 -639320 + (TTCC)n Simple_repeat Simple_repeat 1 229 0 7 1743 356 281 207 50 chr5 151900168 151900492 -636767 + ORR1E LTR MaLR 3 377 -2 7 1743 375 204 78 16 chr5 151900514 151900660 -636599 + L1M2 LINE L1 2362 2512 -3628 7 1743 299 267 33 22 chr5 151901226 151901318 -635941 - Tigger7 DNA MER2_type -5 2486 2394 7 1743 339 342 84 56 chr5 151901304 151901555 -635704 - Tigger7 DNA MER2_type -2212 279 22 7 1743 345 259 90 49 chr5 151901704 151901826 -635433 - B4A SINE B4 -9 283 157 7 1743 1339 99 0 6 chr5 151903260 151903279 -633980 - B2_Mm2 SINE B2 -12 183 166 7 1743 249 57 0 0 chr5 151903279 151903314 -633945 + (TATG)n Simple_repeat Simple_repeat 2 36 0 7 1743 1339 99 0 6 chr5 151903314 151903477 -633782 - B2_Mm2 SINE B2 -30 165 3 7 1743 586 272 29 64 chr5 151904851 151905055 -632204 - B3A SINE B2 -1 197 1 7 1743 764 220 88 22 chr5 151905097 151905278 -631981 - B3A SINE B2 -5 193 1 7 1743 333 0 0 0 chr5 151905300 151905337 -631922 + (TG)n Simple_repeat Simple_repeat 1 37 0 7 1743 531 128 0 0 chr5 151905337 151905446 -631813 + (GA)n Simple_repeat Simple_repeat 2 110 0 7 1743 323 280 88 36 chr5 151905477 151905614 -631645 - RSINE1 SINE B4 -19 146 3 7 1743 552 30 0 0 chr5 151906238 151906304 -630955 + (GA)n Simple_repeat Simple_repeat 1 66 0 7 1743 333 0 0 0 chr5 151906526 151906563 -630696 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 7 1743 320 252 36 0 chr5 151908299 151908410 -628849 + (TCTG)n Simple_repeat Simple_repeat 4 118 0 7 1743 317 186 0 14 chr5 151908579 151908650 -628609 + CT-rich Low_complexity Low_complexity 4 73 0 7 1743 570 254 106 0 chr5 151908830 151908972 -628287 - RSINE1 SINE B4 -6 159 3 7 1743 761 223 119 5 chr5 151909206 151909400 -627859 + B3 SINE B2 1 216 0 7 1743 349 178 0 40 chr5 151909648 151909724 -627535 + B1F SINE Alu 8 80 -69 7 1743 706 200 217 6 chr5 151909942 151910108 -627151 + B3 SINE B2 2 202 -14 7 1743 186 43 0 0 chr5 151910108 151910131 -627128 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 7 1743 414 0 0 0 chr5 151910509 151910555 -626704 + (CA)n Simple_repeat Simple_repeat 2 47 0 7 1743 255 236 18 0 chr5 151911746 151911801 -625458 + ID SINE ID 3 58 -166 7 1743 430 196 137 0 chr5 151911947 151912049 -625210 - B1F SINE Alu 0 149 34 8 1744 432 0 0 0 chr5 151913055 151913103 -624156 + (CA)n Simple_repeat Simple_repeat 2 49 0 8 1744 763 206 7 0 chr5 151913843 151913979 -623280 + B1_Mur4 SINE Alu 2 138 -12 8 1744 261 0 0 0 chr5 151913981 151914010 -623249 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 8 1744 837 219 56 15 chr5 151917761 151917956 -619303 - B3 SINE B2 -5 211 9 8 1744 207 0 0 0 chr5 151918567 151918590 -618669 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8 1744 244 333 0 12 chr5 151918944 151919026 -618233 + ID4_ SINE ID 1 81 -2 8 1744 424 298 104 77 chr5 151919377 151919599 -617660 - B4A SINE B4 -64 228 1 8 1744 189 304 14 0 chr5 151919649 151919718 -617541 + MIRc SINE MIR 77 146 -122 8 1744 793 313 103 11 chr5 151920234 151920515 -616744 - Tigger7 DNA MER2_type -2184 307 1 8 1744 329 0 24 0 chr5 151920866 151920907 -616352 + (GA)n Simple_repeat Simple_repeat 2 43 0 8 1744 248 184 4 0 chr5 151921193 151921243 -616016 + L2b LINE L2 3242 3341 -85 8 1744 894 196 80 10 chr5 151921586 151921787 -615472 - B3 SINE B2 0 216 2 8 1744 1298 145 9 5 chr5 151921787 151922009 -615250 + URR1A DNA MER1_type 2 224 -2 8 1744 209 204 0 0 chr5 151922269 151922328 -614931 + L2b LINE L2 3320 3417 -9 8 1744 180 0 0 0 chr5 151922580 151922600 -614659 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 8 1744 1294 12 12 0 chr5 151923247 151923407 -613852 + (TG)n Simple_repeat Simple_repeat 1 162 0 8 1744 486 0 0 0 chr5 151923407 151923460 -613799 + (GA)n Simple_repeat Simple_repeat 1 54 0 8 1744 649 235 62 47 chr5 151924308 151924500 -612759 + B3A SINE B2 3 197 -1 8 1744 665 323 147 37 chr5 151925109 151925565 -611694 + Lx9 LINE L1 6849 7456 -188 8 1744 441 0 0 0 chr5 151925565 151925614 -611645 + (TG)n Simple_repeat Simple_repeat 2 50 0 8 1744 665 312 177 14 chr5 151925614 151925742 -611517 + Lx9 LINE L1 7457 7625 -19 8 1744 339 25 0 0 chr5 151925742 151925782 -611477 + (TC)n Simple_repeat Simple_repeat 1 40 0 8 1744 972 200 55 5 chr5 151925950 151926151 -611108 + B3 SINE B2 1 211 -5 8 1744 746 270 42 17 chr5 151927527 151927764 -609495 + Lx8 LINE L1 7156 7398 -75 8 1744 4593 58 0 0 chr5 151927804 151928370 -608889 + L1Md_F2 LINE L1 6017 6582 0 8 1744 306 0 0 0 chr5 151929137 151929171 -608088 + (T)n Simple_repeat Simple_repeat 1 34 0 8 1744 201 211 0 0 chr5 151929587 151929639 -607620 + A-rich Low_complexity Low_complexity 1 52 0 8 1744 22 0 0 0 chr5 151930228 151930250 -607009 + AT_rich Low_complexity Low_complexity 1 22 0 8 1744 652 190 238 5 chr5 151930902 151931108 -606151 - Lx9 LINE L1 -2 7642 7389 8 1744 1293 210 70 3 chr5 151931118 151931419 -605840 + Lx9 LINE L1 7073 7393 -251 8 1744 188 79 0 50 chr5 151931844 151931884 -605375 + (TTTTTA)n Simple_repeat Simple_repeat 1 38 0 8 1744 982 255 14 9 chr5 151931885 151932103 -605156 - B4 SINE B4 -72 220 2 8 1744 347 299 129 36 chr5 151932418 151932727 -604532 + LTR86A1 LTR ERVL 84 421 -92 8 1744 1301 98 0 40 chr5 151932743 151932945 -604314 + B2_Mm2 SINE B2 2 195 0 8 1744 197 286 208 8 chr5 151933592 151933712 -603547 + MIR SINE MIR 84 227 -35 8 1744 2407 170 58 41 chr5 151934182 151934698 -602561 + RLTR11A LTR ERVK 1 525 -3 8 1744 424 290 117 49 chr5 151934706 151934971 -602288 + LTR82A LTR ERVL 399 681 -191 8 1744 287 227 44 22 chr5 151935071 151935161 -602098 + B1_Mus1 SINE Alu 34 125 -23 8 1744 414 205 0 0 chr5 151935128 151935211 -602048 + B1F SINE Alu 65 147 -2 8 1744 206 266 31 0 chr5 151935885 151935949 -601310 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 8 1744 320 23 0 43 chr5 151936008 151936054 -601205 + (TTTTTG)n Simple_repeat Simple_repeat 5 48 0 8 1744 1594 226 111 3 chr5 151936996 151937374 -599885 - MTD LTR MaLR 0 419 1 8 1744 942 209 46 46 chr5 151937421 151937599 -599660 + B3 SINE B2 1 178 -38 8 1744 186 43 0 0 chr5 151937599 151937622 -599637 + (CATA)n Simple_repeat Simple_repeat 4 26 0 8 1744 942 209 46 46 chr5 151937622 151937659 -599600 + B3 SINE B2 179 216 0 8 1744 192 40 0 0 chr5 151937704 151937729 -599530 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 8 1744 210 91 0 0 chr5 151938426 151938459 -598800 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 8 1744 912 180 45 119 chr5 151939622 151939824 -597435 + B3 SINE B2 2 191 -25 8 1744 314 23 23 0 chr5 151940248 151940291 -596968 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 8 1744 252 0 0 0 chr5 151940540 151940568 -596691 + (A)n Simple_repeat Simple_repeat 1 28 0 8 1744 189 250 111 12 chr5 151940899 151940980 -596279 + MIR SINE MIR 138 226 -36 8 1744 281 282 13 0 chr5 151941409 151941487 -595772 - MLT1I LTR MaLR -8 403 325 8 1744 219 69 0 0 chr5 151941641 151941670 -595589 + (GGA)n Simple_repeat Simple_repeat 3 31 0 8 1744 1087 194 44 0 chr5 151942593 151942745 -594514 + B3 SINE B2 2 153 -63 8 1744 411 119 0 0 chr5 151942745 151942812 -594447 + (CA)n Simple_repeat Simple_repeat 1 67 0 8 1744 1087 194 44 0 chr5 151942812 151942865 -594394 + B3 SINE B2 154 214 -2 8 1744 271 224 0 0 chr5 151943147 151943205 -594054 + B3 SINE B2 2 59 -157 8 1744 597 222 67 0 chr5 151943222 151943357 -593902 + B3A SINE B2 39 182 -16 8 1744 351 0 0 0 chr5 151943635 151943674 -593585 + (GA)n Simple_repeat Simple_repeat 2 40 0 8 1744 195 129 0 0 chr5 151943677 151943708 -593551 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1744 252 0 0 0 chr5 151943958 151943986 -593273 + (T)n Simple_repeat Simple_repeat 1 28 0 8 1744 1560 186 85 27 chr5 151944250 151944660 -592599 + RMER10A LTR ERVL 1 434 -8 8 1744 253 224 0 146 chr5 151944660 151944749 -592510 + RSINE1 SINE B4 70 145 -20 8 1744 411 110 21 18 chr5 151947665 151947774 -589485 - B2_Mm2 SINE B2 -9 186 46 8 1744 1098 132 40 0 chr5 151947815 151947989 -589270 - B2_Mm2 SINE B2 -14 181 1 8 1744 251 264 12 100 chr5 151948170 151948250 -589009 - Tigger7 DNA MER2_type -2390 101 29 8 1744 252 0 0 0 chr5 151948345 151948373 -588886 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 8 1744 646 203 0 8 chr5 151949275 151949394 -587865 - PB1D9 SINE Alu -2 118 1 8 1744 756 172 306 0 chr5 151949572 151949729 -587530 + B3 SINE B2 3 207 -9 8 1744 369 329 48 7 chr5 151949776 151949923 -587336 + MER119 DNA MER1_type 7 159 -424 8 1744 572 303 110 16 chr5 151950145 151950390 -586869 + MER2 DNA MER2_type 10 277 -68 8 1744 357 333 0 0 chr5 151950655 151950760 -586499 + MER5A DNA MER1_type 79 183 -6 8 1744 245 219 0 0 chr5 151951320 151951361 -585898 + B3A SINE B2 79 119 -79 8 1744 739 197 28 14 chr5 151951408 151951544 -585715 + B1_Mus2 SINE Alu 1 139 -8 8 1744 561 15 0 0 chr5 151951544 151951610 -585649 + (CAAAC)n Simple_repeat Simple_repeat 5 70 0 8 1744 558 229 107 0 chr5 151951707 151951838 -585421 + B3 SINE B2 2 146 -70 8 1744 1121 44 0 28 chr5 151953056 151953197 -584062 + B1_Mm SINE Alu 2 138 -9 8 1744 222 37 0 0 chr5 151953197 151953224 -584035 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8 1744 1585 217 54 29 chr5 151953235 151953644 -583615 - MTD LTR MaLR 0 419 1 8 1744 299 149 11 44 chr5 151954004 151954095 -583164 + GA-rich Low_complexity Low_complexity 6 93 0 8 1744 813 235 5 5 chr5 151954120 151954308 -582951 - ORR1E LTR MaLR -166 193 6 8 1744 328 211 40 185 chr5 151955603 151955754 -581505 + B1_Mur1 SINE Alu 5 133 -16 8 1744 199 286 107 0 chr5 151955876 151955960 -581299 + MIRb SINE MIR 105 197 -71 8 1744 831 156 0 16 chr5 151956088 151956270 -580989 + GA-rich Low_complexity Low_complexity 2 180 0 8 1744 183 80 0 0 chr5 151956881 151956906 -580353 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 8 1744 385 299 76 7 chr5 151956958 151957103 -580156 + RSINE1 SINE B4 3 157 -8 8 1744 22 0 0 0 chr5 151957122 151957144 -580115 + AT_rich Low_complexity Low_complexity 1 22 0 8 1744 1577 170 11 60 chr5 151957666 151958140 -579119 - RMER17C LTR ERVK -519 439 25 8 1744 333 0 0 0 chr5 151959537 151959574 -577685 + (TG)n Simple_repeat Simple_repeat 1 37 0 8 1744 180 0 0 0 chr5 151959574 151959594 -577665 + (TGG)n Simple_repeat Simple_repeat 3 22 0 8 1744 209 30 0 57 chr5 151959751 151959786 -577473 + (TTATA)n Simple_repeat Simple_repeat 5 37 0 8 1744 324 0 0 0 chr5 151959808 151959844 -577415 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 8 1744 279 54 0 0 chr5 151960285 151960322 -576937 + (CAGA)n Simple_repeat Simple_repeat 4 40 0 8 1744 2218 83 10 0 chr5 151960817 151961131 -576128 + ORR1A2 LTR MaLR 3 319 -8 8 1744 200 143 0 23 chr5 151962359 151962402 -574857 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 8 1744 237 65 0 0 chr5 151963970 151964001 -573258 + (A)n Simple_repeat Simple_repeat 1 31 0 8 1744 1140 237 106 35 chr5 151964827 151965168 -572091 + ORR1D2 LTR MaLR 2 366 -4 8 1744 644 240 13 58 chr5 151965554 151965709 -571550 + RSINE1 SINE B4 3 150 -15 8 1744 299 113 0 19 chr5 151965711 151965765 -571494 + (CA)n Simple_repeat Simple_repeat 2 54 0 8 1744 295 352 46 20 chr5 151966125 151966322 -570937 + MER20 DNA MER1_type 16 217 -2 8 1744 1604 137 141 30 chr5 151966381 151966750 -570509 + RMER17C LTR ERVK 1 410 0 8 1744 285 29 0 0 chr5 151967860 151967894 -569365 + (CA)n Simple_repeat Simple_repeat 2 35 0 8 1744 1320 52 0 0 chr5 151967894 151968066 -569193 + (TC)n Simple_repeat Simple_repeat 1 173 0 8 1744 297 224 293 27 chr5 151969236 151969424 -567835 - Tigger7 DNA MER2_type -20 2471 2234 8 1744 613 223 40 13 chr5 151969504 151969654 -567605 + B3 SINE B2 2 155 -61 8 1744 1285 220 41 47 chr5 151969787 151970107 -567152 - Lx5 LINE L1 -2 7048 6731 9 1744 335 336 26 0 chr5 151970131 151970244 -567015 - Tigger7 DNA MER2_type -2373 118 3 8 1744 851 201 83 6 chr5 151971856 151972036 -565223 - B3 SINE B2 -22 194 1 9 1744 212 297 117 49 chr5 151972147 151972310 -564949 + MIRb SINE MIR 28 201 -67 9 1744 1952 144 21 59 chr5 151972321 151972661 -564598 + ORR1A4 LTR MaLR 1 327 -2 9 1744 343 320 32 8 chr5 151973240 151973363 -563896 + ORR1E LTR MaLR 10 135 -224 9 1744 1904 114 14 23 chr5 151973331 151973712 -563547 + RLTR11A LTR ERVK 155 526 -2 9 1744 314 351 0 15 chr5 151978010 151978146 -559113 + MIRb SINE MIR 18 151 -117 9 1744 673 286 81 50 chr5 151978979 151979237 -558022 + Lx8 LINE L1 6219 6484 -989 9 1744 549 303 51 53 chr5 151979889 151980285 -556974 + L1MA4 LINE L1 5156 5609 -688 9 1744 296 93 652 43 chr5 151980299 151980391 -556868 + MTC LTR MaLR 115 262 -159 9 1744 551 265 27 104 chr5 151980400 151980699 -556560 + L1MA4 LINE L1 5655 5930 -370 9 1744 237 254 0 0 chr5 151980714 151980749 -556510 + (TG)n Simple_repeat Simple_repeat 1 35 0 9 1744 2386 160 52 5 chr5 151980749 151981151 -556108 + MTC LTR MaLR 1 421 0 9 1744 237 254 0 0 chr5 151981151 151981174 -556085 + (TG)n Simple_repeat Simple_repeat 2 24 0 9 1744 443 237 5 38 chr5 151981180 151981364 -555895 + (TATG)n Simple_repeat Simple_repeat 1 178 0 9 1744 216 0 0 0 chr5 151981637 151981661 -555598 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 9 1744 1074 89 0 0 chr5 151981661 151981796 -555463 - B1_Mus1 SINE Alu -13 135 1 9 1744 755 281 173 3 chr5 151982542 151982849 -554410 + MLT1B LTR MaLR 16 374 -16 9 1744 256 242 32 0 chr5 151983464 151983526 -553733 + GA-rich Low_complexity Low_complexity 3 66 0 9 1744 1002 208 30 0 chr5 151984369 151984566 -552693 + B3 SINE B2 1 203 -13 9 1744 449 14 57 0 chr5 151985108 151985178 -552081 + (GA)n Simple_repeat Simple_repeat 1 74 0 9 1744 23 0 0 0 chr5 151985987 151986010 -551249 + AT_rich Low_complexity Low_complexity 1 23 0 9 1744 474 252 0 9 chr5 151986795 151986907 -550352 + B3 SINE B2 81 191 -25 9 1744 1265 60 21 21 chr5 151986939 151987128 -550131 + L1Md_F2 LINE L1 6394 6582 0 9 1744 234 267 118 37 chr5 151988594 151988730 -548529 - MIR3 SINE MIR -17 191 45 9 1744 330 26 0 0 chr5 151988902 151988941 -548318 + (TG)n Simple_repeat Simple_repeat 1 39 0 9 1744 379 317 12 35 chr5 151989306 151989476 -547783 + L1MB3 LINE L1 5775 5940 -243 9 1744 267 79 47 16 chr5 151990978 151991042 -546217 + (CAAAAA)n Simple_repeat Simple_repeat 2 67 0 9 1744 366 123 0 0 chr5 151993132 151993189 -544070 + (A)n Simple_repeat Simple_repeat 1 57 0 9 1744 378 0 0 0 chr5 151994058 151994100 -543159 + (CA)n Simple_repeat Simple_repeat 1 42 0 9 1744 647 269 98 0 chr5 151994181 151994374 -542885 + B3 SINE B2 1 212 -4 9 1744 255 273 121 55 chr5 151996210 151996392 -540867 + RMER15 LTR ERVL 275 468 -107 9 1744 1064 198 20 5 chr5 151997294 151997497 -539762 + B3 SINE B2 1 206 -10 9 1744 197 372 100 31 chr5 151997776 151998067 -539192 - L3 LINE CR1 -225 4264 3954 9 1744 296 233 65 22 chr5 151998691 151998783 -538476 - L1MA9 LINE L1 -35 6277 6182 9 1744 2178 153 53 5 chr5 151998822 151999216 -538043 + MTC LTR MaLR 1 413 -8 9 1744 385 272 254 9 chr5 151999220 151999445 -537814 - L1MA9 LINE L1 -185 6127 5848 9 1744 312 250 0 0 chr5 152000641 152000737 -536522 + (CA)n Simple_repeat Simple_repeat 1 96 0 1 1744 247 281 0 0 chr5 152000979 152001043 -536216 + (CATA)n Simple_repeat Simple_repeat 3 66 0 2 1744 495 0 0 0 chr5 152001060 152001115 -536144 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 1744 1794 128 32 32 chr5 152001400 152001747 -535512 - RLTR15 LTR ERVK 0 359 13 4 1744 1023 303 11 0 chr5 152002440 152002704 -534555 + B4A SINE B4 5 271 -21 5 1744 519 17 0 0 chr5 152002729 152002789 -534470 + (CA)n Simple_repeat Simple_repeat 2 61 0 6 1744 202 214 24 0 chr5 152002937 152002979 -534280 + GA-rich Low_complexity Low_complexity 3 45 0 7 1744 373 314 32 7 chr5 152003320 152003474 -533785 + Lx8 LINE L1 7040 7197 -276 8 1744 886 174 0 0 chr5 152003785 152003929 -533330 + B1_Mur1 SINE Alu 5 148 -1 9 1744 1437 232 47 22 chr5 152004320 152004681 -532578 + ORR1D2 LTR MaLR 1 370 0 1 1744 22 0 0 0 chr5 152005133 152005155 -532104 + AT_rich Low_complexity Low_complexity 1 22 0 1 1744 366 206 14 0 chr5 152005220 152005293 -531966 - RSINE1 SINE B4 -83 82 9 1 1744 216 246 14 68 chr5 152005230 152005304 -531955 - B3A SINE B2 -127 71 2 1 1744 483 18 0 0 chr5 152008563 152008619 -528640 + (TA)n Simple_repeat Simple_repeat 2 57 0 1 1744 1116 170 83 24 chr5 152008768 152009057 -528202 - RMER17C LTR ERVK -104 306 1 1 1744 908 286 32 4 chr5 152009583 152009829 -527430 + B4A SINE B4 24 276 -16 1 1744 381 332 98 14 chr5 152010235 152010604 -526655 + L2 LINE L2 2002 2401 -1018 1 1744 504 298 80 30 chr5 152011594 152011662 -525597 + L1M4 LINE L1 4988 5052 -1094 1 1744 1133 92 72 33 chr5 152011662 152011842 -525417 + B2_Mm2 SINE B2 2 188 -7 1 1744 504 298 80 30 chr5 152011842 152012109 -525150 + L1M4 LINE L1 5053 5339 -807 1 1744 232 244 0 0 chr5 152012241 152012286 -524973 + polypurine Low_complexity Low_complexity 4 48 0 2 1744 265 250 42 0 chr5 152012519 152012591 -524668 + L1MB7 LINE L1 6092 6166 -18 2 1744 690 230 109 5 chr5 152012627 152012819 -524440 - B4 SINE B4 -66 226 15 2 1744 242 188 29 59 chr5 152013815 152013830 -523429 + polypurine Low_complexity Low_complexity 3 17 0 2 1744 1128 102 0 0 chr5 152013830 152013977 -523282 + B1_Mus1 SINE Alu 1 147 -1 2 1744 288 0 0 0 chr5 152013978 152014010 -523249 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 2 1744 242 188 29 59 chr5 152014010 152014060 -523199 + polypurine Low_complexity Low_complexity 18 68 0 2 1744 270 95 0 0 chr5 152014324 152014366 -522893 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 2 1744 1011 59 89 0 chr5 152014366 152014501 -522758 - B1_Mus1 SINE Alu 0 148 2 2 1744 1844 154 18 15 chr5 152014543 152014873 -522386 + Lx4B LINE L1 6712 7042 -16 2 1744 369 62 0 0 chr5 152014873 152014921 -522338 + (TAA)n Simple_repeat Simple_repeat 1 48 0 3 1744 297 0 0 0 chr5 152017187 152017220 -520039 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 3 1744 189 0 0 0 chr5 152017805 152017826 -519433 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 1744 354 156 0 0 chr5 152018145 152018209 -519050 + CT-rich Low_complexity Low_complexity 1 64 0 3 1744 243 0 0 0 chr5 152018524 152018551 -518708 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3 1744 453 179 0 12 chr5 152018551 152018636 -518623 - B1_Mus2 SINE Alu -10 137 54 3 1744 219 325 36 0 chr5 152021856 152021939 -515320 + L2c LINE L2 3287 3372 -15 3 1744 378 96 324 63 chr5 152022249 152022360 -514899 - B2_Mm2 SINE B2 -8 187 48 3 1744 999 120 7 0 chr5 152022397 152022547 -514712 - B2_Mm1t SINE B2 -40 153 3 3 1744 992 232 0 0 chr5 152022592 152022790 -514469 + B3 SINE B2 5 202 -14 3 1744 444 202 80 24 chr5 152022923 152023101 -514158 - MER47A DNA MER2_type -90 276 86 4 1744 410 304 10 141 chr5 152023052 152023358 -513901 - Tigger5 DNA MER2_type -2098 308 43 4 1744 271 338 46 42 chr5 152024224 152024462 -512797 + L2a LINE L2 3187 3425 -1 4 1744 1419 219 152 87 chr5 152024648 152025188 -512071 + RMER15 LTR ERVL 1 575 0 4 1744 185 266 158 11 chr5 152025627 152025722 -511537 + MIRm SINE MIR 13 121 -155 4 1744 264 306 72 0 chr5 152026053 152026164 -511095 + MIR SINE MIR 31 149 -59 4 1744 947 187 182 59 chr5 152026504 152026958 -510301 + RLTR11A2 LTR ERVK 18 527 0 4 1744 939 186 51 47 chr5 152027481 152027695 -509564 - B3 SINE B2 0 216 2 4 1744 469 281 8 0 chr5 152028610 152028738 -508521 - RSINE1 SINE B4 -33 132 4 4 1744 230 224 0 58 chr5 152029051 152029103 -508156 - MIR3 SINE MIR -23 185 137 4 1744 272 285 71 21 chr5 152029563 152029703 -507556 - MIR SINE MIR -67 195 49 5 1744 789 171 99 6 chr5 152029703 152029885 -507374 + RMER1A Other Other 831 1029 -1 5 1744 650 163 102 0 chr5 152030014 152030161 -507098 - URR1B DNA MER1_type 0 225 64 5 1744 519 60 0 0 chr5 152031506 152031573 -505686 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 5 1744 677 12 0 12 chr5 152031574 152031657 -505602 + (TTCTC)n Simple_repeat Simple_repeat 1 82 0 5 1744 1078 80 11 17 chr5 152031660 152031839 -505420 + (TTC)n Simple_repeat Simple_repeat 2 179 0 5 1744 218 207 0 17 chr5 152031844 152031903 -505356 + CT-rich Low_complexity Low_complexity 2 59 0 5 1744 503 236 330 21 chr5 152033393 152033727 -503532 + RMER10A LTR ERVL 6 442 0 5 1744 450 0 0 0 chr5 152035169 152035219 -502040 + (TG)n Simple_repeat Simple_repeat 1 50 0 5 1744 486 0 0 0 chr5 152035219 152035272 -501987 + (GA)n Simple_repeat Simple_repeat 1 54 0 5 1744 198 71 0 0 chr5 152035323 152035351 -501908 + (AGGGGG)n Simple_repeat Simple_repeat 2 29 0 6 1744 206 283 0 16 chr5 152036423 152036484 -500775 + C-rich Low_complexity Low_complexity 2 61 0 6 1744 429 182 158 20 chr5 152037078 152037179 -500080 + PB1D7 SINE Alu 1 115 -5 6 1744 603 0 0 0 chr5 152037186 152037253 -500006 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 6 1744 226 267 162 0 chr5 152037493 152037598 -499661 - PB1 SINE Alu -4 123 2 6 1744 201 213 0 41 chr5 152038260 152038309 -498950 + CT-rich Low_complexity Low_complexity 3 49 0 6 1744 213 121 0 0 chr5 152038419 152038452 -498807 + (TTC)n Simple_repeat Simple_repeat 2 34 0 6 1744 844 26 35 0 chr5 152039613 152039726 -497533 + (TTCTC)n Simple_repeat Simple_repeat 4 120 0 6 1744 943 274 5 5 chr5 152040487 152040711 -496548 - ID_B1 SINE B4 0 224 1 6 1744 3906 156 95 63 chr5 152041165 152042027 -495232 - RMER19B LTR ERVK -12 890 1 6 1744 216 182 0 0 chr5 152042139 152042183 -495076 + (CACCAT)n Simple_repeat Simple_repeat 5 48 0 7 1745 880 140 15 7 chr5 152043533 152043670 -493589 + B1_Mm SINE Alu 1 138 -9 7 1745 261 0 0 0 chr5 152043670 152043699 -493560 + (TG)n Simple_repeat Simple_repeat 2 30 0 7 1745 960 229 25 49 chr5 152044540 152044907 -492352 + RLTR15 LTR ERVK 1 358 -1 7 1745 702 308 150 60 chr5 152045405 152045872 -491387 + MER44D DNA MER2_type 7 515 -190 7 1745 335 343 30 7 chr5 152047659 152047794 -489465 + MER44D DNA MER2_type 561 698 -7 7 1745 1186 196 9 5 chr5 152048673 152048888 -488371 - B3 SINE B2 0 216 1 7 1745 280 293 87 107 chr5 152050751 152050957 -486302 - MLT1A1 LTR MaLR -204 204 3 7 1745 339 242 7 10 chr5 152051042 152051349 -485910 + (CA)n Simple_repeat Simple_repeat 1 305 0 7 1745 342 0 0 0 chr5 152051368 152051406 -485853 + (CA)n Simple_repeat Simple_repeat 2 39 0 7 1745 447 19 0 0 chr5 152051881 152051933 -485326 + (CA)n Simple_repeat Simple_repeat 1 52 0 7 1745 182 279 0 0 chr5 152052297 152052340 -484919 + L2a LINE L2 3377 3419 -7 7 1745 259 271 113 3 chr5 152052488 152052598 -484661 + MIR SINE MIR 119 229 -33 8 1745 1957 150 27 0 chr5 152052875 152053209 -484050 + ORR1B2 LTR MaLR 1 343 -24 8 1745 24 0 0 0 chr5 152054723 152054747 -482512 + AT_rich Low_complexity Low_complexity 1 24 0 8 1745 810 241 5 64 chr5 152055680 152055884 -481375 + B3A SINE B2 2 193 -5 8 1745 1039 174 90 0 chr5 152056121 152056322 -480937 - URR1A DNA MER1_type 0 226 8 8 1745 673 279 80 66 chr5 152056335 152056623 -480636 + L1M3 LINE L1 5358 5649 -534 8 1745 195 330 11 74 chr5 152056699 152056794 -480465 - L2c LINE L2 -5 3382 3294 8 1745 18147 40 2 3 chr5 152056803 152059671 -477588 - L1Md_F3 LINE L1 0 6584 3720 8 1745 187 236 14 14 chr5 152059801 152059874 -477385 + C-rich Low_complexity Low_complexity 2 74 0 8 1745 492 18 0 0 chr5 152059882 152059939 -477320 + (TATG)n Simple_repeat Simple_repeat 4 60 0 8 1745 494 271 78 0 chr5 152060027 152060156 -477103 - B1_Mur2 SINE Alu -6 143 5 9 1745 905 234 32 86 chr5 152060702 152060982 -476277 - ORR1D2 LTR MaLR -7 363 99 9 1745 850 249 186 41 chr5 152062222 152062696 -474563 - L1M2 LINE L1 -396 5907 5363 9 1745 228 359 40 15 chr5 152063138 152063336 -473923 + Lx8 LINE L1 7269 7471 -2 9 1745 231 306 142 34 chr5 152063440 152063616 -473643 + L1_Rod LINE L1 5039 5233 -614 9 1745 313 319 0 78 chr5 152063938 152064040 -473219 + ID_B1 SINE B4 93 186 -38 9 1745 1179 260 62 26 chr5 152064710 152065259 -472000 + L1_Mur3 LINE L1 854 1424 -4456 9 1745 268 244 12 71 chr5 152065416 152065500 -471759 - L2a LINE L2 -15 3411 3333 9 1745 239 308 54 45 chr5 152067572 152067684 -469575 + RMER15 LTR ERVL 463 575 0 9 1745 611 26 13 0 chr5 152068355 152068432 -468827 + (TC)n Simple_repeat Simple_repeat 2 79 0 9 1745 237 119 0 0 chr5 152068435 152068477 -468782 + (TG)n Simple_repeat Simple_repeat 1 42 0 1 1745 216 0 0 0 chr5 152068477 152068500 -468759 + (GA)n Simple_repeat Simple_repeat 1 24 0 1 1745 360 0 0 0 chr5 152070896 152070936 -466323 + (CA)n Simple_repeat Simple_repeat 1 40 0 1 1745 677 299 28 9 chr5 152071562 152071775 -465484 + MER2 DNA MER2_type 128 344 -1 1 1745 660 317 122 47 chr5 152072594 152073021 -464238 + LTR40b LTR ERVL 4 462 0 1 1745 216 0 0 0 chr5 152073238 152073262 -463997 + (TA)n Simple_repeat Simple_repeat 2 25 0 1 1745 1144 147 77 14 chr5 152073372 152073579 -463680 - URR1A DNA MER1_type -6 220 1 1 1745 351 346 12 42 chr5 152073593 152073759 -463500 - MLT1A0 LTR MaLR -186 179 19 1 1745 595 332 55 37 chr5 152073877 152074205 -463054 + ORR1D2 LTR MaLR 37 370 0 1 1745 563 329 114 37 chr5 152074210 152074586 -462673 + LTR16B2 LTR ERVL 50 454 -8 1 1745 374 280 15 29 chr5 152074806 152074942 -462317 + L1MA8 LINE L1 5848 5981 -310 1 1745 240 263 105 70 chr5 152075048 152075191 -462068 + L1MA8 LINE L1 6152 6299 -1 1 1745 620 269 111 25 chr5 152075612 152075810 -461449 + B3A SINE B2 2 216 0 1 1745 245 240 0 0 chr5 152075866 152075916 -461343 + (TG)n Simple_repeat Simple_repeat 2 51 0 1 1745 366 170 0 0 chr5 152077382 152077476 -459783 + (CA)n Simple_repeat Simple_repeat 2 95 0 1 1745 330 26 0 0 chr5 152077897 152077936 -459323 + (TG)n Simple_repeat Simple_repeat 1 39 0 1 1745 693 263 0 37 chr5 152077948 152078110 -459149 - B3A SINE B2 -41 157 2 1 1745 423 0 0 0 chr5 152078188 152078235 -459024 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1 1745 236 250 187 33 chr5 152078268 152078359 -458900 + L2a LINE L2 3108 3212 -214 1 1745 371 259 33 6 chr5 152078390 152078495 -458764 + MTD LTR MaLR 6 119 -302 1 1745 2499 162 104 10 chr5 152078496 152078975 -458284 - RMER1A Other Other -2 1028 505 1 1745 1102 234 116 14 chr5 152078975 152079269 -457990 + MTD LTR MaLR 96 419 0 1 1745 510 270 35 0 chr5 152079503 152079618 -457641 + ID_B1 SINE B4 103 221 -3 1 1745 303 209 95 71 chr5 152079639 152079850 -457409 + L1MB7 LINE L1 5105 5320 -826 1 1745 230 56 0 27 chr5 152079877 152079914 -457345 + (TG)n Simple_repeat Simple_repeat 1 36 0 1 1745 427 302 170 21 chr5 152079950 152080326 -456933 + L1MB7 LINE L1 5328 5759 -419 1 1745 678 273 128 14 chr5 152080344 152080626 -456633 + L1MB7 LINE L1 5861 6174 -10 1 1745 828 186 197 0 chr5 152080731 152080919 -456340 + URR1B DNA MER1_type 1 225 0 1 1745 236 269 76 25 chr5 152082180 152082298 -454961 - MIRb SINE MIR -35 233 110 1 1745 485 248 123 11 chr5 152082477 152082647 -454612 + Lx3B LINE L1 5706 5918 -382 1 1745 301 315 160 27 chr5 152082846 152082910 -454349 + Lx8 LINE L1 7158 7231 -242 1 1745 387 0 0 0 chr5 152082910 152082953 -454306 + (TG)n Simple_repeat Simple_repeat 2 44 0 1 1745 301 315 160 27 chr5 152082953 152083038 -454221 + Lx8 LINE L1 7232 7326 -147 1 1745 380 228 78 50 chr5 152083343 152083523 -453736 + Charlie5 DNA MER1_type 2348 2532 -92 1 1745 1580 38 32 11 chr5 152084483 152084668 -452591 - B2_Mm1a SINE B2 -3 190 2 1 1745 1040 60 15 0 chr5 152084824 152084958 -452301 - B1_Mus2 SINE Alu 0 147 12 1 1745 290 264 27 45 chr5 152085193 152085207 -452052 + MT2B LTR ERVL 152 163 -438 1 1745 427 230 79 9 chr5 152085207 152085321 -451938 + B1_Mm SINE Alu 2 123 -24 1 1745 286 331 29 129 chr5 152085764 152085934 -451325 + RSINE1 SINE B4 3 155 -10 1 1745 304 293 170 15 chr5 152086431 152086566 -450693 - HAL1-3A_ME LINE L1 -419 2439 2284 1 1745 385 185 14 43 chr5 152086575 152086716 -450543 + CT-rich Low_complexity Low_complexity 3 139 0 1 1745 200 211 0 0 chr5 152087657 152087695 -449564 + (TG)n Simple_repeat Simple_repeat 1 38 0 1 1745 368 247 0 45 chr5 152087697 152087786 -449473 - B4A SINE B4 0 292 208 1 1745 387 293 52 62 chr5 152088133 152088326 -448933 - Lx8 LINE L1 -369 7104 6914 1 1745 763 204 165 20 chr5 152088337 152088537 -448722 - B4A SINE B4 -63 229 1 1 1745 1955 242 34 5 chr5 152089092 152089503 -447756 + Lx5 LINE L1 6460 6882 -168 1 1745 200 222 0 0 chr5 152089537 152089582 -447677 + A-rich Low_complexity Low_complexity 1 45 0 1 1745 863 335 55 67 chr5 152091849 152092079 -445180 - MER44B DNA MER2_type -7 543 324 1 1745 3540 52 0 0 chr5 152092079 152092479 -444780 - MTB LTR MaLR 0 400 1 1 1745 863 335 55 67 chr5 152092479 152092759 -444500 - MER44B DNA MER2_type -227 323 39 1 1745 1782 185 34 36 chr5 152092929 152093352 -443907 - ORR1B1 LTR MaLR -8 386 1 1 1745 207 0 0 0 chr5 152093356 152093379 -443880 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1 1745 233 119 0 45 chr5 152093380 152093424 -443835 - ORR1B1 LTR MaLR -287 42 1 1 1745 228 135 0 0 chr5 152093955 152093992 -443267 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 1 1745 856 229 66 5 chr5 152094982 152095180 -442079 - B3 SINE B2 -2 214 5 1 1745 3560 38 5 0 chr5 152095335 152095733 -441526 - MTB LTR MaLR 0 400 1 1 1745 425 248 131 8 chr5 152095788 152095910 -441349 + B1F1 SINE Alu 7 143 -6 1 1745 3347 135 119 71 chr5 152096082 152096663 -440596 + RMER19C LTR ERVK 1 609 -2 1 1745 255 301 60 40 chr5 152097149 152097298 -439961 + RMER15 LTR ERVL 417 568 -7 1 1745 1335 89 33 16 chr5 152097818 152098000 -439259 + B2_Mm2 SINE B2 2 186 -9 1 1745 1147 214 15 10 chr5 152098545 152098748 -438511 + B3 SINE B2 1 204 -12 1 1745 4240 56 10 6 chr5 152099839 152100357 -436902 + L1_Mus3 LINE L1 6116 6635 -3 1 1745 471 79 0 18 chr5 152100893 152100968 -436291 + B1_Mus2 SINE Alu 43 138 -9 1 1745 22 70 0 0 chr5 152101412 152101455 -435804 + AT_rich Low_complexity Low_complexity 1 43 0 1 1745 958 138 14 0 chr5 152101916 152102061 -435198 + B3A SINE B2 4 150 -48 1 1745 248 309 19 85 chr5 152102674 152102780 -434479 + MER58C DNA MER1_type 18 116 -99 1 1745 581 276 14 29 chr5 152102932 152103070 -434189 - RSINE1 SINE B4 0 165 30 1 1745 248 146 20 20 chr5 152103163 152103212 -434047 - MLT1B LTR MaLR -12 378 330 1 1745 776 244 138 0 chr5 152104878 152105095 -432164 + MER2 DNA MER2_type 6 252 -93 1 1745 459 0 0 0 chr5 152105100 152105151 -432108 + (TA)n Simple_repeat Simple_repeat 1 51 0 1 1745 953 279 107 61 chr5 152105192 152105870 -431389 + RMER13A LTR ERVK 16 773 -135 1 1745 191 310 35 0 chr5 152105982 152106040 -431219 - MIR SINE MIR -74 188 129 1 1745 182 277 46 0 chr5 152106123 152106188 -431071 - MIRc SINE MIR -78 190 123 1 1745 270 143 0 0 chr5 152106568 152106631 -430628 + (TC)n Simple_repeat Simple_repeat 2 64 0 1 1745 198 330 155 28 chr5 152107210 152107391 -429868 - MIRb SINE MIR -38 230 27 1 1745 219 237 36 95 chr5 152108838 152108922 -428337 + L2b LINE L2 3297 3375 0 1 1745 765 243 88 6 chr5 152109256 152109438 -427821 - B3A SINE B2 -1 197 1 1 1745 1070 213 69 99 chr5 152110193 152110509 -426750 - RMER12 LTR ERVK -2 1320 1014 1 1745 884 59 8 0 chr5 152110509 152110628 -426631 + (GAAAA)n Simple_repeat Simple_repeat 5 124 0 1 1745 1070 213 69 99 chr5 152110628 152110644 -426615 - RMER12 LTR ERVK -309 1013 998 1 1745 565 167 16 0 chr5 152110644 152110770 -426489 + GA-rich Low_complexity Low_complexity 1 128 0 1 1745 398 311 105 85 chr5 152110781 152110832 -426427 - RLTR22_Mur LTR ERVK -135 1269 1224 1 1745 414 0 0 0 chr5 152110832 152110878 -426381 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1 1745 1527 263 70 111 chr5 152110878 152111824 -425435 - RLTR22_Mur LTR ERVK -181 1223 1 1 1745 282 239 28 56 chr5 152111903 152111974 -425285 + ID_B1 SINE B4 133 201 -23 1 1745 307 284 0 47 chr5 152111914 152111999 -425260 + B1F SINE Alu 68 148 -1 1 1745 7183 60 16 3 chr5 152112160 152113029 -424230 + L1Md_F2 LINE L1 5703 6582 0 1 1745 985 169 7 0 chr5 152113790 152113938 -423321 + B1_Mur2 SINE Alu 1 149 0 1 1745 396 0 0 0 chr5 152114629 152114673 -422586 + (CACAG)n Simple_repeat Simple_repeat 1 44 0 1 1745 531 0 0 0 chr5 152115194 152115253 -422006 + (TG)n Simple_repeat Simple_repeat 2 60 0 1 1745 2341 85 3 12 chr5 152115880 152116202 -421057 + ORR1A2 LTR MaLR 1 319 -8 1 1745 216 342 104 9 chr5 152116262 152116377 -420882 + MIRc SINE MIR 82 207 -61 1 1745 828 271 77 15 chr5 152116842 152117115 -420144 - MTE-int LTR MaLR 0 1580 1291 1 1745 238 333 118 0 chr5 152117159 152117303 -419956 + RMER15 LTR ERVL 403 563 -12 1 1745 2280 101 0 24 chr5 152117387 152117639 -419620 + ORR1A2 LTR MaLR 1 252 -75 1 1745 3030 152 79 21 chr5 152117639 152118169 -419090 - RLTR31_Mm LTR ERVK 0 561 1 1 1745 2280 101 0 24 chr5 152118169 152118251 -419008 + ORR1A2 LTR MaLR 253 327 0 1 1745 241 287 183 0 chr5 152118325 152118440 -418819 + L2a LINE L2 3246 3381 -45 1 1745 279 0 0 0 chr5 152118719 152118750 -418509 + (CA)n Simple_repeat Simple_repeat 1 31 0 1 1745 295 255 28 21 chr5 152119739 152119883 -417376 + (TA)n Simple_repeat Simple_repeat 2 146 0 1 1745 377 301 78 46 chr5 152120245 152120398 -416861 - B4 SINE B4 0 292 135 1 1745 26 50 0 0 chr5 152121248 152121288 -415971 + AT_rich Low_complexity Low_complexity 1 40 0 1 1745 1840 256 41 46 chr5 152121292 152121968 -415291 + L1_Rod LINE L1 3953 4625 -1222 1 1745 3842 83 37 11 chr5 152122066 152122637 -414622 - MusHAL1 LINE L1 -1586 1126 541 1 1745 302 45 23 0 chr5 152123487 152123531 -413728 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1 1745 640 198 1 31 chr5 152124203 152124341 -412918 - B1_Mur1 SINE Alu -6 143 13 1 1745 269 284 43 86 chr5 152124264 152124403 -412856 - MT2B2 LTR ERVL -344 240 108 1 1745 869 184 18 34 chr5 152124634 152124884 -412375 + MTD LTR MaLR 141 419 0 1 1745 35430 74 2 4 chr5 152125470 152129753 -407506 + L1Md_F2 LINE L1 466 4746 -1137 1 1745 1774 26 0 0 chr5 152129753 152129945 -407314 + B2_Mm1a SINE B2 2 193 0 1 1745 35430 65 5 9 chr5 152129945 152131774 -405485 + L1Md_F2 LINE L1 4747 6559 -23 1 1745 1411 99 16 5 chr5 152132750 152132942 -404317 + B2_Mm2 SINE B2 2 195 0 1 1745 1177 153 57 0 chr5 152133580 152133789 -403470 + URR1A DNA MER1_type 6 226 0 2 1745 975 109 162 12 chr5 152134188 152134355 -402904 - B2_Mm1t SINE B2 0 193 2 2 1745 926 319 60 36 chr5 152134869 152135317 -401942 + MLT1C LTR MaLR 5 463 -4 2 1745 303 312 106 30 chr5 152135321 152135453 -401806 + MER58A DNA MER1_type 77 218 -6 2 1745 4625 12 0 0 chr5 152136913 152137402 -399857 - L1Md_A LINE L1 0 6582 6094 2 1745 9231 10 0 0 chr5 152137402 152138434 -398825 + L1_Mm LINE L1 3487 4518 -1365 2 1745 180 359 13 0 chr5 152138818 152138896 -398363 + MIR SINE MIR 63 141 -121 2 1745 405 0 0 0 chr5 152139218 152139263 -397996 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1745 623 289 26 0 chr5 152140213 152140365 -396894 - RSINE1 SINE B4 -6 159 4 2 1745 1659 159 122 37 chr5 152140396 152140638 -396621 - RMER17C LTR ERVK 0 410 135 2 1745 702 91 0 0 chr5 152140638 152140737 -396522 + (GA)n Simple_repeat Simple_repeat 2 100 0 2 1745 1659 159 122 37 chr5 152140737 152140872 -396387 - RMER17C LTR ERVK -276 134 1 2 1745 309 323 115 0 chr5 152141171 152141267 -395992 - PB1D10 SINE Alu 0 117 11 2 1745 1393 110 11 0 chr5 152141309 152141500 -395759 - B2_Mm2 SINE B2 -1 194 2 2 1745 239 302 50 30 chr5 152142543 152142642 -394617 + Charlie26a DNA MER1_type 46 146 -179 2 1745 192 40 0 0 chr5 152142986 152143011 -394248 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 2 1745 1713 194 86 66 chr5 152143127 152143453 -393806 - MTC LTR MaLR 0 421 85 2 1745 1211 34 0 40 chr5 152143453 152143605 -393654 - B1_Mus2 SINE Alu -1 146 1 2 1745 1713 194 86 66 chr5 152143605 152143687 -393572 - MTC LTR MaLR -337 84 5 2 1745 788 292 100 37 chr5 152144155 152144535 -392724 + MER31A LTR ERV1 1 404 -81 2 1745 471 191 0 0 chr5 152144685 152144837 -392422 + CT-rich Low_complexity Low_complexity 2 153 0 2 1745 397 277 116 30 chr5 152145071 152145235 -392024 + B3A SINE B2 6 183 -15 2 1745 6844 128 15 1 chr5 152145318 152146291 -390968 + Lx2 LINE L1 6009 6995 -2 2 1745 476 278 59 7 chr5 152146813 152146965 -390294 + RSINE1 SINE B4 4 163 -2 2 1745 2933 133 83 24 chr5 152148185 152148654 -388605 - RLTR19 LTR ERVK 0 499 3 2 1745 184 54 26 51 chr5 152148922 152148961 -388298 + (TGGGGG)n Simple_repeat Simple_repeat 5 42 0 2 1745 594 280 192 0 chr5 152149513 152149706 -387553 + B4A SINE B4 3 232 -60 2 1745 1434 206 120 43 chr5 152149718 152150135 -387124 + RLTR20B3 LTR ERVK 23 471 -106 2 1745 288 0 0 0 chr5 152150135 152150167 -387092 + (TG)n Simple_repeat Simple_repeat 1 32 0 2 1745 234 0 0 0 chr5 152150167 152150192 -387067 + (GA)n Simple_repeat Simple_repeat 1 26 0 2 1745 33 0 0 0 chr5 152150237 152150270 -386989 + AT_rich Low_complexity Low_complexity 1 33 0 2 1745 351 78 0 0 chr5 152150322 152150373 -386886 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 1745 453 50 0 0 chr5 152152247 152152307 -384952 + (CA)n Simple_repeat Simple_repeat 2 61 0 2 1745 25 0 0 0 chr5 152152501 152152526 -384733 + AT_rich Low_complexity Low_complexity 1 25 0 2 1745 201 138 0 0 chr5 152152625 152152654 -384605 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2 1745 494 283 70 10 chr5 152152979 152153179 -384080 - L1MC1 LINE L1 -5 6328 6117 2 1745 225 0 0 0 chr5 152153271 152153296 -383963 + (T)n Simple_repeat Simple_repeat 1 25 0 2 1745 214 327 9 129 chr5 152153488 152153604 -383655 + MIRc SINE MIR 94 195 -73 2 1745 202 228 86 0 chr5 152153611 152153702 -383557 + MIRb SINE MIR 132 231 -31 2 1745 492 308 145 28 chr5 152154379 152154593 -382666 + B4A SINE B4 50 288 -4 2 1745 231 300 75 23 chr5 152154822 152154996 -382263 + BGLII LTR ERVK 77 259 -162 2 1745 207 244 0 0 chr5 152154999 152155040 -382219 + GA-rich Low_complexity Low_complexity 3 43 0 2 1745 859 278 14 19 chr5 152155396 152155612 -381647 + B3 SINE B2 2 216 0 2 1745 4646 45 21 2 chr5 152155612 152156191 -381068 + RLTR1D LTR ERV1 16 605 0 2 1745 36307 46 0 4 chr5 152156211 152161650 -375609 + L1Md_T LINE L1 74 5589 -297 2 1745 8963 34 0 1 chr5 152161650 152162647 -374612 + L1Md_T LINE L1 5590 6585 0 2 1745 290 208 48 152 chr5 152162831 152162956 -374303 + PB1D10 SINE Alu 1 112 -5 2 1745 275 277 52 26 chr5 152163122 152163237 -374022 - L1MA8 LINE L1 -160 6131 6014 2 1745 21 0 0 0 chr5 152163378 152163399 -373860 + AT_rich Low_complexity Low_complexity 1 21 0 2 1745 342 0 0 0 chr5 152164394 152164432 -372827 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 1745 249 119 0 0 chr5 152164501 152164543 -372716 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 2 1745 3890 103 22 9 chr5 152165002 152165591 -371668 + ORR1A2-int LTR MaLR 1215 1782 -181 2 1745 2428 101 9 11 chr5 152165591 152165967 -371292 + ORR1A2 LTR MaLR 6 384 0 2 1745 384 22 0 0 chr5 152166246 152166291 -370968 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 1745 27 0 0 0 chr5 152167873 152167900 -369359 + AT_rich Low_complexity Low_complexity 1 27 0 2 1745 1178 218 0 14 chr5 152168257 152168476 -368783 + B3 SINE B2 1 216 0 2 1745 251 253 13 0 chr5 152169301 152169376 -367883 + GA-rich Low_complexity Low_complexity 3 78 0 2 1745 316 258 0 0 chr5 152169538 152169604 -367655 + Lx7 LINE L1 7042 7107 -589 2 1745 1894 208 125 33 chr5 152169606 152170094 -367165 - RMER5 LTR ERV1 -1 533 1 2 1745 534 200 92 43 chr5 152170151 152170292 -366967 + Lx7 LINE L1 7154 7301 -395 2 1745 457 200 0 0 chr5 152173050 152173135 -364124 + B3 SINE B2 132 216 0 2 1745 228 220 0 48 chr5 152173170 152173232 -364027 + RMER4A LTR ERVK 317 375 -91 2 1745 247 283 0 0 chr5 152173605 152173665 -363594 + B1F2 SINE Alu 2 61 -88 2 1745 222 37 0 0 chr5 152173925 152173952 -363307 + (T)n Simple_repeat Simple_repeat 1 27 0 2 1745 347 231 0 0 chr5 152174295 152174360 -362899 - PB1D10 SINE Alu -37 80 16 2 218 329 206 29 0 chr5 152174530 152174598 -362661 - MTD LTR MaLR -12 407 338 2 1746 467 338 40 44 chr5 152174672 152174923 -362336 + B4A SINE B4 43 292 0 2 1746 333 271 120 9 chr5 152175513 152175621 -361638 - PB1D9 SINE Alu 0 120 1 2 1746 478 152 296 26 chr5 152175707 152175822 -361437 - B1_Mus2 SINE Alu -1 146 1 2 1746 705 170 36 84 chr5 152176552 152176719 -360540 + B3 SINE B2 2 160 -56 2 1746 245 209 86 43 chr5 152177092 152177162 -360097 + ID4 SINE ID 1 73 -10 2 1746 203 176 0 0 chr5 152177178 152177212 -360047 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 2 1746 2590 153 0 26 chr5 152178483 152178907 -358352 + MTC LTR MaLR 1 413 -8 2 1746 518 237 30 33 chr5 152179620 152179787 -357472 - B3 SINE B2 -35 158 4 2 1746 198 287 103 77 chr5 152179823 152179940 -357319 + L2c LINE L2 3076 3195 -192 2 1746 184 106 43 0 chr5 152180685 152180691 -356568 + (TAAAA)n Simple_repeat Simple_repeat 5 10 0 2 1746 1294 41 0 0 chr5 152180691 152180838 -356421 + B1_Mm SINE Alu 1 147 0 2 1746 184 106 43 0 chr5 152180838 152180878 -356381 + (TAAAA)n Simple_repeat Simple_repeat 1 42 0 2 1746 423 205 211 0 chr5 152181347 152181508 -355751 + L1MB3 LINE L1 5945 6139 -44 2 1746 28 0 0 0 chr5 152181535 152181563 -355696 + AT_rich Low_complexity Low_complexity 1 28 0 2 1746 506 286 34 7 chr5 152182566 152182714 -354545 - MER5A1 DNA MER1_type -13 153 2 2 1746 387 228 97 8 chr5 152182791 152182915 -354344 + MER33 DNA MER1_type 79 213 -111 2 1746 1295 147 13 35 chr5 152182953 152183185 -354074 + ORR1D1 LTR MaLR 148 374 0 2 1746 1049 251 184 8 chr5 152183260 152183613 -353646 - MTD LTR MaLR 0 419 5 2 1746 1038 208 64 0 chr5 152184582 152184784 -352475 + B3 SINE B2 2 216 0 2 1746 4748 179 50 30 chr5 152184815 152185658 -351601 + RMER13A LTR ERVK 1 860 0 2 1746 241 308 0 0 chr5 152185678 152185730 -351529 + ID4 SINE ID 30 81 -2 2 1746 26 0 0 0 chr5 152185998 152186024 -351235 + AT_rich Low_complexity Low_complexity 1 26 0 2 1746 319 239 34 76 chr5 152186869 152186987 -350272 + PB1D10 SINE Alu 5 117 0 2 1746 438 289 158 32 chr5 152187183 152187462 -349797 + RMER15 LTR ERVL 258 571 -4 2 1746 207 0 0 0 chr5 152187500 152187523 -349736 + (A)n Simple_repeat Simple_repeat 1 23 0 2 1746 1236 199 19 0 chr5 152187529 152187740 -349519 + B3 SINE B2 1 215 -1 2 1746 814 220 51 11 chr5 152187765 152187940 -349319 + B3 SINE B2 1 182 -34 2 1746 681 274 152 26 chr5 152187955 152188194 -349065 - L1MB2 LINE L1 -199 5972 5697 2 1746 1149 232 145 3 chr5 152188194 152188518 -348741 - ORR1D2 LTR MaLR 0 370 1 2 1746 681 274 152 26 chr5 152188518 152188627 -348632 - L1MB2 LINE L1 -475 5696 5580 2 1746 609 244 193 28 chr5 152189097 152189278 -347981 + B3 SINE B2 1 211 -5 2 1746 505 244 59 25 chr5 152189463 152189581 -347678 - B4A SINE B4 -170 122 1 2 1746 279 0 0 0 chr5 152191290 152191321 -345938 + (CAAAC)n Simple_repeat Simple_repeat 3 33 0 2 1746 283 286 94 9 chr5 152191777 152191883 -345376 + B4 SINE B4 9 123 -169 2 1746 3153 34 14 0 chr5 152194176 152194528 -342731 + IAPEY2_LTR LTR ERVK 1 357 0 2 1746 700 322 67 11 chr5 152194528 152194795 -342464 + B4A SINE B4 9 290 -2 2 1746 968 191 17 0 chr5 152196166 152196344 -340915 + B3 SINE B2 36 216 0 2 1746 441 172 107 18 chr5 152197931 152198060 -339199 + MTD LTR MaLR 224 403 -16 2 1746 804 316 167 45 chr5 152198069 152198722 -338537 + Lx8 LINE L1 6679 7473 0 2 1746 3221 71 5 10 chr5 152199273 152199671 -337588 - MTA_Mm LTR MaLR 0 396 1 2 1746 259 202 24 0 chr5 152199822 152199906 -337353 + GA-rich Low_complexity Low_complexity 2 87 0 3 1746 864 200 83 16 chr5 152199920 152200113 -337146 - MTEa LTR MaLR -169 210 5 3 1746 225 0 0 0 chr5 152200267 152200292 -336967 + (CAG)n Simple_repeat Simple_repeat 1 25 0 3 1746 3374 125 14 0 chr5 152200409 152200849 -336410 + RLTR41 LTR ERV1 1 446 0 3 1746 268 140 80 0 chr5 152201718 152201768 -335491 - RLTR11B LTR ERVK -33 420 367 3 1746 1555 304 48 33 chr5 152201789 152201967 -335292 + RodERV21-int LTR ERV1 4235 4418 -573 3 1746 373 19 18 18 chr5 152201967 152202022 -335237 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 3 1746 1555 304 48 33 chr5 152202022 152202485 -334774 + RodERV21-int LTR ERV1 4419 4885 -106 3 1746 808 265 116 30 chr5 152203544 152203812 -333447 + B4A SINE B4 2 292 0 3 1746 218 159 14 42 chr5 152203812 152203884 -333375 + (CA)n Simple_repeat Simple_repeat 2 71 0 3 1746 388 228 33 50 chr5 152203891 152204071 -333188 + (CATA)n Simple_repeat Simple_repeat 4 180 0 3 1746 357 178 32 26 chr5 152204071 152204227 -333032 + (CA)n Simple_repeat Simple_repeat 2 158 0 3 1746 288 210 24 30 chr5 152204198 152204365 -332894 + (CATA)n Simple_repeat Simple_repeat 1 166 0 3 1746 296 182 51 29 chr5 152204386 152204561 -332698 + (CA)n Simple_repeat Simple_repeat 2 180 0 3 1746 358 247 34 34 chr5 152204574 152204750 -332509 + (CA)n Simple_repeat Simple_repeat 1 176 0 3 1746 27 0 0 0 chr5 152204750 152204777 -332482 + AT_rich Low_complexity Low_complexity 1 27 0 3 1746 2315 224 31 52 chr5 152204789 152205364 -331895 + RLTR20B1 LTR ERVK 1 563 0 3 1746 385 290 22 82 chr5 152206903 152207038 -330221 + B4A SINE B4 165 291 -1 3 1746 242 228 0 34 chr5 152207040 152207099 -330160 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 3 1746 477 261 0 0 chr5 152207715 152207807 -329452 + B3A SINE B2 59 150 -48 3 1746 189 0 0 0 chr5 152207837 152207858 -329401 + (CA)n Simple_repeat Simple_repeat 1 21 0 3 1746 21 36 0 0 chr5 152208753 152208781 -328478 + AT_rich Low_complexity Low_complexity 1 28 0 3 1746 21 36 0 0 chr5 152208932 152208960 -328299 + AT_rich Low_complexity Low_complexity 1 28 0 3 1746 847 223 116 11 chr5 152210480 152210670 -326589 + B3 SINE B2 1 210 -6 3 1746 2561 196 131 55 chr5 152210988 152211599 -325660 + RLTR13D1 LTR ERVK 1 640 -383 3 1746 189 0 0 0 chr5 152211599 152211620 -325639 + (C)n Simple_repeat Simple_repeat 1 21 0 3 1746 2561 116 91 35 chr5 152211620 152211950 -325309 + RLTR13D1 LTR ERVK 433 1023 0 3 1746 252 0 0 0 chr5 152212338 152212366 -324893 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 1746 183 80 0 0 chr5 152212424 152212449 -324810 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 1746 410 261 93 25 chr5 152213115 152213233 -324026 - B4A SINE B4 -84 208 83 3 1746 612 288 34 99 chr5 152213227 152213571 -323688 - MTD LTR MaLR -7 372 18 3 1746 275 265 54 7 chr5 152214410 152214558 -322701 + (CATA)n Simple_repeat Simple_repeat 3 157 0 3 1746 401 234 34 28 chr5 152214482 152214658 -322601 + (CA)n Simple_repeat Simple_repeat 2 178 0 3 1746 227 279 12 43 chr5 152214582 152214743 -322516 + (CATATA)n Simple_repeat Simple_repeat 4 159 0 3 1746 201 217 8 37 chr5 152214745 152214879 -322380 + (CA)n Simple_repeat Simple_repeat 1 130 0 3 1746 380 106 10 31 chr5 152214923 152215020 -322239 + (CA)n Simple_repeat Simple_repeat 1 95 0 3 1746 378 306 39 39 chr5 152215123 152215276 -321983 + MLT1M LTR MaLR 128 280 -392 3 1746 29 0 0 0 chr5 152216819 152216848 -320411 + AT_rich Low_complexity Low_complexity 1 29 0 3 1746 22 0 0 0 chr5 152217250 152217272 -319987 + AT_rich Low_complexity Low_complexity 1 22 0 3 1746 273 88 167 50 chr5 152217360 152217420 -319839 + B1_Mur1 SINE Alu 83 149 0 3 1746 250 333 0 23 chr5 152217420 152217446 -319813 + B4 SINE B4 172 255 -37 3 1746 580 206 90 108 chr5 152217742 152217954 -319305 + B4 SINE B4 13 220 -72 3 1746 1111 43 14 0 chr5 152217820 152217959 -319300 + B1_Mm SINE Alu 7 147 0 3 1746 760 216 160 16 chr5 152218530 152218718 -318541 - B3 SINE B2 -1 215 1 3 1746 714 180 56 28 chr5 152218873 152219016 -318243 + B1_Mur1 SINE Alu 3 149 0 3 1746 1071 273 109 31 chr5 152219042 152219714 -317545 + L1M4 LINE L1 4440 5201 -945 3 1746 919 268 81 21 chr5 152219760 152220236 -317023 + L1M4 LINE L1 5162 5662 -516 3 1746 1213 220 139 36 chr5 152220251 152220581 -316678 + MTD LTR MaLR 1 364 -55 3 1746 766 272 81 69 chr5 152220583 152220931 -316328 - Lx9 LINE L1 -382 7262 6911 3 1746 396 0 0 0 chr5 152222119 152222163 -315096 + (TC)n Simple_repeat Simple_repeat 1 44 0 3 1746 282 29 0 0 chr5 152222163 152222197 -315062 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 1746 270 313 50 10 chr5 152223318 152223418 -313841 - L2a LINE L2 0 3426 3323 3 1746 518 143 23 23 chr5 152223810 152223939 -313320 + GA-rich Low_complexity Low_complexity 3 131 0 3 1746 189 0 0 0 chr5 152224456 152224477 -312782 + (A)n Simple_repeat Simple_repeat 1 21 0 3 1746 1022 95 7 7 chr5 152226038 152226049 -311210 - B1_Mus1 SINE Alu 0 148 138 3 1746 243 0 0 0 chr5 152226049 152226076 -311183 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3 1746 1022 95 7 7 chr5 152226076 152226212 -311047 - B1_Mus1 SINE Alu -11 137 1 3 1746 1215 35 7 0 chr5 152226433 152226577 -310682 + B1_Mus2 SINE Alu 1 145 -2 3 1746 33 0 0 0 chr5 152226588 152226621 -310638 + AT_rich Low_complexity Low_complexity 1 33 0 3 1746 1270 189 0 0 chr5 152226771 152226977 -310282 - B3 SINE B2 -6 210 5 3 1746 619 24 24 0 chr5 152227621 152227706 -309553 + (CA)n Simple_repeat Simple_repeat 2 88 0 3 1746 369 0 0 0 chr5 152228145 152228186 -309073 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 1746 874 236 19 5 chr5 152228593 152228806 -308453 - B3 SINE B2 0 216 1 3 1746 290 163 0 20 chr5 152231428 152231478 -305781 - Lx4B LINE L1 -336 6722 6674 3 1746 2893 184 14 23 chr5 152231584 152232146 -305113 + Lx4B LINE L1 6501 7057 -1 3 1746 251 358 71 41 chr5 152232511 152232680 -304579 - MER102b DNA MER1_type -157 184 11 3 1746 4889 118 26 28 chr5 152233223 152234034 -303225 + RMER17D2 LTR ERVK 1 809 0 3 1746 34 0 0 0 chr5 152235099 152235133 -302126 + AT_rich Low_complexity Low_complexity 1 34 0 3 1746 1818 203 67 51 chr5 152235201 152235694 -301565 + RLTR20B3 LTR ERVK 21 521 -56 3 1746 545 234 0 0 chr5 152235727 152235834 -301425 - RSINE1 SINE B4 -45 120 14 3 1746 257 350 106 75 chr5 152235836 152236129 -301130 - MLT1H1 LTR MaLR -77 478 177 3 1746 253 336 82 7 chr5 152236411 152236546 -300713 + B1F2 SINE Alu 3 147 -2 3 1746 8498 33 3 0 chr5 152236794 152237787 -299472 + L1Md_F2 LINE L1 5587 6582 0 3 1746 320 203 94 0 chr5 152237906 152237970 -299289 - MERVK26-int LTR ERVK -1410 5509 5440 3 1746 614 202 34 29 chr5 152237970 152238130 -299129 - L1_Rod LINE L1 -193 5654 5501 3 1746 23 33 0 0 chr5 152239715 152239745 -297514 + AT_rich Low_complexity Low_complexity 1 30 0 3 1746 306 0 0 0 chr5 152239953 152239987 -297272 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 1746 608 295 50 41 chr5 152240064 152240407 -296852 - RLTR15 LTR ERVK -13 346 1 3 1746 993 289 77 6 chr5 152240409 152240761 -296498 - Lx7 LINE L1 -417 7279 6903 3 1746 1375 278 46 7 chr5 152240782 152241221 -296038 - L1_Mur3 LINE L1 -15 5865 5410 3 1746 1289 126 0 5 chr5 152241216 152241408 -295851 + L1_Mm LINE L1 4799 4989 -894 3 1746 4296 128 69 19 chr5 152241408 152242159 -295100 + Lx3_Mus LINE L1 6213 7001 -8 3 1746 2286 192 61 45 chr5 152242179 152242752 -294507 + MYSERV16_I-int LTR ERVK 614 1195 -1131 3 1746 6443 134 18 13 chr5 152242796 152244642 -292617 + L1VL4 LINE L1 277 2154 -3729 3 1746 5405 107 10 9 chr5 152244633 152245425 -291834 + L1VL4 LINE L1 4286 5078 -805 3 1746 3054 226 45 15 chr5 152245432 152245864 -291395 + MYSERV16_I-int LTR ERVK 1509 1953 -373 3 1746 4524 106 10 82 chr5 152245864 152246673 -290586 + RMER17A LTR ERVK 1 751 0 3 1746 3054 226 45 15 chr5 152246673 152247034 -290225 + MYSERV16_I-int LTR ERVK 1954 2326 0 3 1746 1836 241 34 22 chr5 152247048 152247556 -289703 + RLTR11A LTR ERVK 15 528 0 3 1746 23 0 0 0 chr5 152248065 152248088 -289171 + AT_rich Low_complexity Low_complexity 1 23 0 3 1746 241 321 87 65 chr5 152248096 152248326 -288933 + L1_Rod LINE L1 79 313 -6859 3 1746 2175 223 37 168 chr5 152248577 152249057 -288202 + Lx2 LINE L1 5282 5674 -1323 3 1746 2686 130 49 14 chr5 152249057 152249487 -287772 + BGLII_A LTR ERVK 1 445 0 3 1746 2175 124 106 21 chr5 152249487 152249778 -287481 + Lx2 LINE L1 5675 5999 -998 3 1746 394 268 10 17 chr5 152250970 152251087 -286172 + B3A SINE B2 1 118 -77 3 1746 498 46 0 0 chr5 152251383 152251448 -285811 + (TG)n Simple_repeat Simple_repeat 1 65 0 3 1746 1372 105 16 0 chr5 152251605 152251795 -285464 + B2_Mm2 SINE B2 1 193 -2 3 1746 381 43 0 0 chr5 152251894 152251941 -285318 + (GA)n Simple_repeat Simple_repeat 2 48 0 3 1746 2839 91 8 12 chr5 152252462 152252861 -284398 + MTB LTR MaLR 3 399 -1 3 1746 3021 18 0 0 chr5 152253443 152253780 -283479 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1746 57871 18 7 5 chr5 152253780 152260245 -277014 - IAPEz-int LTR ERVK 0 6481 8 3 1746 3021 18 0 0 chr5 152260245 152260582 -276677 - IAPLTR1a_Mm LTR ERVK 0 337 1 3 1746 642 301 16 0 chr5 152260665 152260858 -276401 - B3 SINE B2 -1 215 20 3 1746 681 247 140 0 chr5 152260875 152261061 -276198 - B3 SINE B2 -1 215 4 3 1746 24 0 0 0 chr5 152261813 152261837 -275422 + AT_rich Low_complexity Low_complexity 1 24 0 3 1746 394 301 66 25 chr5 152264936 152265134 -272125 + B3 SINE B2 1 206 -10 3 1746 207 0 0 0 chr5 152265136 152265159 -272100 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3 1746 440 333 39 19 chr5 152265178 152265383 -271876 + B3 SINE B2 1 209 -7 3 1746 2764 114 5 2 chr5 152265424 152265819 -271440 + MTA_Mm LTR MaLR 1 396 0 3 1746 1648 138 7 0 chr5 152265819 152266108 -271151 + MTA_Mm-int LTR MaLR 1 291 -807 3 1746 3789 14 121 0 chr5 152266110 152266550 -270709 + MT2_Mm LTR ERVL 1 493 0 3 1746 48494 16 3 0 chr5 152266550 152271894 -265365 + MERVL-int LTR ERVL 1 5360 -125 3 1746 362 167 46 35 chr5 152271894 152271981 -265278 + MTA_Mm-int LTR MaLR 553 640 -1323 3 1746 321 0 0 0 chr5 152271981 152272019 -265240 + MERVL-int LTR ERVL 5448 5485 0 3 1746 3807 11 121 0 chr5 152272019 152272459 -264800 + MT2_Mm LTR ERVL 1 493 0 3 1746 955 113 13 0 chr5 152272459 152272610 -264649 + MT-int LTR MaLR 289 441 -657 3 1746 2516 126 17 21 chr5 152272604 152273097 -264162 + MT-int LTR MaLR 644 1538 -425 3 1746 2771 117 29 42 chr5 152273169 152273650 -263609 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1746 302 0 53 0 chr5 152273650 152273688 -263571 + IAPEz-int LTR ERVK 8 47 -6434 3 1746 3482 73 7 29 chr5 152273688 152274427 -262832 + IAPEz-int LTR ERVK 17 662 -5819 3 1746 454 94 0 30 chr5 152274427 152274493 -262766 + IAPEz-int LTR ERVK 1359 1422 -5059 3 1746 1839 119 4 4 chr5 152274479 152274741 -262518 + IAPEz-int LTR ERVK 2236 2497 -5183 3 1746 953 80 24 0 chr5 152274736 152274861 -262398 + IAPEz-int LTR ERVK 4783 4910 -2770 3 1746 26600 20 4 0 chr5 152274861 152277805 -259454 + IAPEz-int LTR ERVK 3525 6481 0 3 1746 2731 115 29 42 chr5 152277805 152278286 -258973 + IAPLTR2_Mm LTR ERVK 1 475 0 3 1746 23 0 0 0 chr5 152278692 152278715 -258544 + AT_rich Low_complexity Low_complexity 1 23 0 4 1746 1155 313 69 16 chr5 152278759 152279366 -257893 - Lx8 LINE L1 -1 7472 6834 4 1746 427 319 38 0 chr5 152279658 152279818 -257441 - Lx8 LINE L1 -969 6504 6339 4 1746 2129 228 39 5 chr5 152279848 152280443 -256816 + L1_Mur2 LINE L1 4634 5248 -629 4 1746 2619 195 115 14 chr5 152281086 152281972 -255287 + L1_Mur2 LINE L1 889 1864 -4013 4 1746 272 223 105 11 chr5 152282528 152282623 -254636 + RLTR19-int LTR ERVK 3735 3838 -2299 4 1746 917 91 0 0 chr5 152282919 152283040 -254219 + B2_Mm2 SINE B2 1 121 -74 4 1746 1203 35 14 0 chr5 152283040 152283184 -254075 + B1_Mm SINE Alu 2 147 0 4 1746 216 0 0 0 chr5 152283184 152283208 -254051 + (A)n Simple_repeat Simple_repeat 1 24 0 4 1746 291 54 0 0 chr5 152283289 152283326 -253933 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 4 1746 2952 33 88 0 chr5 152285829 152286193 -251066 - MTA_Mm LTR MaLR 0 396 1 4 1746 339 237 0 0 chr5 152286420 152286517 -250742 + Lx9 LINE L1 7541 7637 -7 4 1746 1179 253 23 50 chr5 152286825 152287266 -249993 - L1_Mur3 LINE L1 -3609 2271 1843 4 1746 687 248 83 53 chr5 152287263 152287638 -249621 - Lx7 LINE L1 -1572 6124 5739 4 1746 6418 171 44 50 chr5 152287644 152288011 -249248 - Lx2 LINE L1 -1 6996 6625 4 1746 303 28 0 0 chr5 152288011 152288047 -249212 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 4 1746 1094 59 7 0 chr5 152288047 152288183 -249076 - B1_Mm SINE Alu -10 137 1 4 1746 15226 171 41 46 chr5 152288183 152288996 -248263 - Lx2 LINE L1 -373 6624 5798 4 1746 256 24 49 0 chr5 152288996 152289037 -248222 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 4 1746 15226 171 14 17 chr5 152289037 152289061 -248198 - L1_Mur1 LINE L1 -89 5797 5797 4 1746 1143 51 0 0 chr5 152289061 152289198 -248061 - B1_Mm SINE Alu -10 137 1 4 1746 15226 171 14 17 chr5 152289198 152290248 -247011 - Lx2 LINE L1 -89 5797 4738 4 1746 432 0 0 0 chr5 152290248 152290296 -246963 + (TG)n Simple_repeat Simple_repeat 2 49 0 4 1746 15226 171 14 17 chr5 152290296 152292229 -245030 - Lx2 LINE L1 -1149 4737 2786 4 1746 291 224 0 0 chr5 152292229 152292287 -244972 + RLTR11A LTR ERVK 471 528 0 4 1746 960 211 13 4 chr5 152292287 152292520 -244739 + L1_Mur3 LINE L1 4840 5074 -806 4 1746 1286 243 32 8 chr5 152292549 152292671 -244588 - L1_Mur3 LINE L1 -4531 1349 1219 4 1746 480 35 0 0 chr5 152292671 152292729 -244530 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 1746 1286 272 101 24 chr5 152292729 152293291 -243968 - L1_Mur3 LINE L1 -6510 1218 613 4 1746 364 366 45 27 chr5 152293364 152293698 -243561 - L1_Mur3 LINE L1 -6911 817 478 4 1746 517 100 11 11 chr5 152293939 152294030 -243229 + (GA)n Simple_repeat Simple_repeat 2 92 0 4 1746 13490 183 41 8 chr5 152294406 152295125 -242134 - L1_Mur2 LINE L1 -222 5664 4921 4 1746 3665 79 0 32 chr5 152295125 152295623 -241636 + LTRIS_Mm LTR ERV1 1 482 0 4 1746 13490 183 41 8 chr5 152295623 152298008 -239251 - L1_Mur2 LINE L1 -966 4920 2458 4 1746 36858 48 14 4 chr5 152298019 152304248 -233011 - L1Md_T LINE L1 -2 6580 331 4 1746 2024 162 5 15 chr5 152304246 152304646 -232613 - MusHAL1 LINE L1 -1443 1269 874 4 1746 467 17 17 0 chr5 152304668 152304728 -232531 + (TG)n Simple_repeat Simple_repeat 2 62 0 4 1746 395 156 0 0 chr5 152304734 152304811 -232448 + L1_Mur1 LINE L1 1247 1323 -4563 4 1746 743 111 103 0 chr5 152304810 152304936 -232323 - MusHAL1 LINE L1 -1121 1591 1453 4 218 6011 101 3 0 chr5 152304935 152305874 -231385 + L1_Mm LINE L1 2782 3723 -2160 4 1747 706 277 62 2 chr5 152305974 152306172 -231087 + B3A SINE B2 8 216 0 4 1747 514 167 0 9 chr5 152306187 152306296 -230963 + Lx2B LINE L1 6888 6995 -5 4 1747 21 57 0 0 chr5 152306344 152306379 -230880 + AT_rich Low_complexity Low_complexity 1 35 0 4 1747 958 205 78 0 chr5 152307123 152307328 -229931 - Lx7 LINE L1 -1250 6446 6226 4 1747 423 340 50 55 chr5 152307328 152307546 -229713 + RLTR25A LTR ERVK 1 217 -886 4 1747 2708 243 67 7 chr5 152307630 152308363 -228896 + Lx7 LINE L1 6444 7220 -476 4 1747 2300 268 42 2 chr5 152308363 152308957 -228302 + MERVK26-int LTR ERVK 5681 6298 -621 4 1747 1456 140 92 4 chr5 152309067 152309339 -227920 + RMER6B LTR ERVK 1 296 -165 4 1747 767 215 48 16 chr5 152309339 152309629 -227630 - L1_Mur2 LINE L1 -6547 1181 895 4 1747 2715 34 23 99 chr5 152310161 152310556 -226703 + RLTR10B2 LTR ERVK 1 365 0 4 1747 1087 100 18 6 chr5 152310700 152310871 -226388 - L1_Mus3 LINE L1 -12 6626 6454 4 1747 646 251 55 11 chr5 152310991 152311172 -226087 + ORR1C1 LTR MaLR 1 189 -189 4 1747 641 95 35 0 chr5 152311176 152311292 -225967 + (TC)n Simple_repeat Simple_repeat 2 121 0 4 1747 1183 81 19 0 chr5 152311622 152311782 -225477 + B2_Mm2 SINE B2 2 164 -31 4 1747 614 258 18 1 chr5 152311782 152311951 -225308 + ORR1C1 LTR MaLR 98 327 -51 4 1747 3059 245 50 33 chr5 152312116 152313103 -224156 - Lx9 LINE L1 -2 7642 6640 4 1747 581 290 4 31 chr5 152313218 152313446 -223813 - Lx6 LINE L1 0 7460 7239 4 1747 433 185 36 13 chr5 152313451 152313572 -223687 - Lx9 LINE L1 -1714 5930 5761 4 1747 1270 258 77 9 chr5 152313611 152314246 -223013 - Lx9 LINE L1 -23 7621 6928 4 1747 326 23 0 23 chr5 152314317 152314361 -222898 + (TA)n Simple_repeat Simple_repeat 2 44 0 4 1747 791 206 19 32 chr5 152314621 152314843 -222416 - Lx9 LINE L1 -137 5743 5504 4 1747 3368 75 2 7 chr5 152315168 152315613 -221646 + L1_Mus1 LINE L1 6121 6563 -4 4 1747 21 36 0 0 chr5 152316640 152316668 -220591 + AT_rich Low_complexity Low_complexity 1 28 0 4 1747 281 304 54 36 chr5 152317316 152317483 -219776 - RLTR15 LTR ERVK -9 350 181 4 1747 4547 71 34 14 chr5 152317490 152318116 -219143 - L1Md_F2 LINE L1 0 6582 5945 4 1747 2591 73 9 14 chr5 152318116 152318463 -218796 + IAPLTR4 LTR ERVK 1 345 0 4 1747 477 196 9 35 chr5 152318466 152318582 -218677 + IAPLTR3-int LTR ERVK 5 117 -6704 4 1747 393 168 18 61 chr5 152318582 152318696 -218563 + IAPLTR3-int LTR ERVK 834 942 -5879 4 1747 354 145 15 146 chr5 152318677 152318814 -218445 + IAPLTR3-int LTR ERVK 834 952 -6629 4 1747 1203 198 111 57 chr5 152318926 152319417 -217842 + ETnERV3-int LTR ERVK 251 668 -5469 4 1747 404 183 92 0 chr5 152319415 152319535 -217724 + ETnERV3-int LTR ERVK 1719 1849 -5557 4 1747 301 244 0 75 chr5 152319546 152319639 -217620 + ETnERV3-int LTR ERVK 2454 2539 -4867 4 1747 34671 37 3 7 chr5 152319703 152324898 -212361 + L1Md_T LINE L1 418 5586 -297 4 1747 8108 46 2 2 chr5 152324898 152325894 -211365 + L1Md_T LINE L1 5587 6582 0 4 1747 6244 111 20 12 chr5 152325894 152327206 -210053 + ETnERV3-int LTR ERVK 2779 4208 -3198 4 1747 2980 24 0 0 chr5 152327250 152327587 -209672 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1747 52987 22 17 6 chr5 152327587 152333996 -203263 - IAPEz-int LTR ERVK 0 6481 3 4 1747 2994 21 0 0 chr5 152333991 152334328 -202931 - IAPLTR1a_Mm LTR ERVK 0 337 1 4 1747 435 204 13 4 chr5 152334328 152334448 -202811 + IAPLTR3-int LTR ERVK 2362 2464 -2380 4 1747 777 85 17 8 chr5 152334463 152334582 -202677 + MMERVK10C-int LTR ERVK 4530 4649 -2932 4 1747 5944 241 28 29 chr5 152334715 152337241 -200018 + IAPLTR3-int LTR ERVK 5083 7240 -273 4 1747 2623 68 9 9 chr5 152337242 152337586 -199673 + IAPLTR4 LTR ERVK 2 345 0 4 1747 31580 86 8 11 chr5 152337586 152343052 -194207 - L1Md_F2 LINE L1 -632 5950 499 4 1747 310 302 50 56 chr5 152343062 152343241 -194018 - RLTR15 LTR ERVK -181 178 1 4 1747 921 276 62 11 chr5 152343249 152343601 -193658 - Lx7 LINE L1 -423 7273 6904 4 1747 992 140 0 0 chr5 152343601 152343758 -193501 - RLTR11A LTR ERVK 0 528 372 4 1747 1352 257 23 31 chr5 152343756 152344110 -193149 + RLTR11A LTR ERVK 178 528 0 4 1747 1171 247 20 50 chr5 152344833 152345230 -192029 + L1_Rod LINE L1 5284 5668 -179 4 1747 557 105 0 11 chr5 152345229 152345316 -191943 + Lx LINE L1 5589 5674 -980 4 1747 2725 132 7 14 chr5 152345316 152345762 -191497 + BGLII_A LTR ERVK 1 443 -2 4 1747 1356 125 52 0 chr5 152345766 152346060 -191199 + Lx2A1 LINE L1 5671 5999 -567 4 1747 421 280 12 17 chr5 152347268 152347387 -189872 + B3A SINE B2 1 121 -72 4 1747 507 33 0 0 chr5 152347520 152347581 -189678 + (TA)n Simple_repeat Simple_repeat 1 61 0 4 1747 448 389 31 31 chr5 152347801 152348093 -189166 + B4A SINE B4 1 292 0 4 1747 2608 85 47 13 chr5 152348518 152348900 -188359 + MTB LTR MaLR 1 395 -5 4 1747 672 291 24 0 chr5 152349567 152349777 -187482 - B3 SINE B2 -1 215 1 4 1747 606 274 134 0 chr5 152349787 152349973 -187286 - B3 SINE B2 -1 215 5 4 1747 8541 100 38 1 chr5 152352043 152354382 -182877 + L1Md_F LINE L1 108 2534 -3349 4 1747 1251 20 0 0 chr5 152354399 152354545 -182714 - B1_Mm SINE Alu 0 147 2 4 1747 31351 58 9 2 chr5 152354552 152359569 -177690 - L1Md_F2 LINE L1 0 6582 1533 4 1747 11637 4 0 0 chr5 152359569 152360932 -176327 + L1Md_A LINE L1 4224 5586 -297 4 1747 8969 8 0 0 chr5 152360932 152361928 -175331 + L1Md_A LINE L1 5587 6582 0 4 1747 3923 147 32 36 chr5 152361930 152363072 -174187 - L1Md_F2 LINE L1 -4339 1544 408 4 1747 325 271 66 7 chr5 152363080 152363232 -174027 - Lx9 LINE L1 -603 7041 6881 4 1747 965 235 83 24 chr5 152363469 152363842 -173417 - Lx9 LINE L1 -1685 5959 5501 4 1747 198 0 0 0 chr5 152365268 152365290 -171969 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 1747 25 31 0 0 chr5 152365435 152365467 -171792 + AT_rich Low_complexity Low_complexity 1 32 0 4 1747 210 91 0 0 chr5 152365733 152365766 -171493 + (CA)n Simple_repeat Simple_repeat 2 34 0 4 1747 581 295 71 50 chr5 152365878 152366217 -171042 - RLTR15 LTR ERVK -13 346 1 4 1747 436 255 143 24 chr5 152366219 152366428 -170831 - Lx7 LINE L1 -417 7279 7046 4 1747 667 272 76 22 chr5 152366430 152366746 -170513 - Lx7 LINE L1 -1479 6217 5885 4 1747 10018 201 38 14 chr5 152366745 152366791 -170468 - L1_Mur2 LINE L1 -1978 3899 3847 4 1747 207 0 0 0 chr5 152366791 152366814 -170445 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4 1747 10018 201 38 14 chr5 152366814 152367797 -169462 - L1_Mur2 LINE L1 -2031 3846 2810 4 1747 204 40 0 0 chr5 152367797 152367822 -169437 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 4 1747 10018 201 38 14 chr5 152367822 152369352 -167907 - L1_Mur2 LINE L1 -3068 2809 1282 4 1747 27 62 0 0 chr5 152369876 152369924 -167335 + AT_rich Low_complexity Low_complexity 1 48 0 4 1747 23 92 0 0 chr5 152370039 152370104 -167155 + AT_rich Low_complexity Low_complexity 1 65 0 4 1747 27 29 0 0 chr5 152370160 152370194 -167065 + AT_rich Low_complexity Low_complexity 1 34 0 4 1747 342 342 24 57 chr5 152370263 152370387 -166872 + B1_Mm SINE Alu 18 137 -10 4 1747 21 57 0 0 chr5 152370390 152370425 -166834 + AT_rich Low_complexity Low_complexity 1 35 0 4 1747 2995 188 9 18 chr5 152370512 152371212 -166047 + MYSERV16_I-int LTR ERVK 1 1353 -1489 4 1747 8408 98 56 10 chr5 152371217 152372561 -164698 + Lx3_Mus LINE L1 5597 7001 -8 4 1747 2679 147 7 9 chr5 152372589 152373035 -164224 + BGLII_A LTR ERVK 1 445 0 4 1747 1269 94 98 0 chr5 152373037 152373240 -164019 + Lx2A1 LINE L1 5671 5893 -1115 4 1747 243 185 0 84 chr5 152373251 152373322 -163937 + Lx9 LINE L1 7205 7269 -375 4 1747 3128 212 29 7 chr5 152373346 152373964 -163295 + Lx5 LINE L1 6408 7039 -11 4 1747 1123 84 19 0 chr5 152373983 152374138 -163121 + L1_Mus1 LINE L1 6410 6567 0 4 1747 2327 114 28 0 chr5 152374154 152374513 -162746 + Lx3_Mus LINE L1 6641 7009 0 5 1747 376 211 11 0 chr5 152374575 152374670 -162589 + Lx9 LINE L1 7329 7424 -220 4 1747 549 0 0 0 chr5 152374768 152374829 -162430 + (TG)n Simple_repeat Simple_repeat 2 62 0 5 1747 180 238 198 0 chr5 152375009 152375110 -162149 - L3 LINE CR1 -780 3709 3589 5 1747 27 29 0 0 chr5 152375682 152375716 -161543 + AT_rich Low_complexity Low_complexity 1 34 0 5 1747 299 269 53 11 chr5 152376308 152376409 -160850 + B3A SINE B2 1 103 -113 5 1747 8158 32 13 1 chr5 152376439 152377411 -159848 + L1Md_F3 LINE L1 5600 6583 -1 5 1747 360 0 0 0 chr5 152377703 152377743 -159516 + (TG)n Simple_repeat Simple_repeat 2 41 0 5 1747 279 321 61 64 chr5 152377797 152378077 -159182 + B4A SINE B4 2 280 -12 5 1747 2415 100 81 3 chr5 152378524 152378895 -158364 + MTB LTR MaLR 1 400 0 5 1747 1882 152 90 22 chr5 152378895 152379368 -157891 + MTB-int LTR MaLR 697 1098 0 5 1747 2789 79 42 3 chr5 152379368 152379749 -157510 + MTB LTR MaLR 1 396 -4 5 1747 30625 71 7 5 chr5 152380439 152385632 -151627 + L1Md_F2 LINE L1 382 5586 -297 5 1747 8243 38 1 2 chr5 152385632 152386616 -150643 + L1Md_F2 LINE L1 5587 6569 -13 5 1747 487 345 60 0 chr5 152389970 152390138 -147121 + B3 SINE B2 1 178 -38 5 1747 1151 62 14 0 chr5 152390155 152390300 -146959 + B1_Mm SINE Alu 1 147 0 5 1747 483 300 196 22 chr5 152390367 152390551 -146708 + B3 SINE B2 1 216 0 5 1747 2621 134 0 8 chr5 152390592 152390991 -146268 + MTB LTR MaLR 1 396 0 5 1747 6396 110 27 65 chr5 152390991 152392132 -145127 + MTB-int LTR MaLR 1 1098 0 5 1747 2908 88 8 2 chr5 152392132 152392530 -144729 + MTB LTR MaLR 1 400 0 5 1747 1588 264 73 31 chr5 152393073 152393272 -143987 + RMER5 LTR ERV1 5 203 -331 5 1747 1502 51 15 0 chr5 152393272 152393468 -143791 + L1Md_A LINE L1 6384 6582 0 5 1747 1588 264 73 31 chr5 152393468 152393777 -143482 + RMER5 LTR ERV1 204 534 0 5 1747 1607 334 78 26 chr5 152394278 152395488 -141771 - Lx8 LINE L1 0 7473 6201 5 1747 522 0 0 0 chr5 152395488 152395546 -141713 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 5 1747 32116 69 2 15 chr5 152395547 152400722 -136537 + L1Md_F2 LINE L1 483 5586 -297 5 1747 7889 50 1 9 chr5 152400722 152401714 -135545 + L1Md_F2 LINE L1 5587 6570 -12 5 1747 366 0 56 0 chr5 152401716 152401770 -135489 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 5 1747 199 54 0 51 chr5 152401779 152401818 -135441 + (TA)n Simple_repeat Simple_repeat 2 38 0 5 1747 1316 89 0 45 chr5 152401914 152402114 -135145 - B2_Mm2 SINE B2 -4 191 1 5 1747 699 310 103 23 chr5 152402266 152402907 -134352 - Lx8 LINE L1 -1682 5962 5266 5 1747 5241 206 24 14 chr5 152403143 152404467 -132792 + L1_Mur2 LINE L1 3912 5248 -629 5 1747 2476 182 24 81 chr5 152405085 152406061 -131198 + L1_Mur3 LINE L1 889 1864 -4013 5 1747 22 70 0 0 chr5 152409178 152409221 -128038 + AT_rich Low_complexity Low_complexity 1 43 0 5 1747 242 239 49 35 chr5 152409324 152409467 -127792 + Lx9 LINE L1 7498 7642 -2 5 1747 477 240 32 0 chr5 152410198 152410323 -126936 - L1_Mur3 LINE L1 -3611 2269 2141 5 1747 4149 118 29 17 chr5 152410336 152410994 -126265 - Lx LINE L1 -5 6649 5984 5 1747 280 125 0 0 chr5 152410996 152411036 -126223 - RLTR44B LTR ERVK -407 42 3 5 1747 278 192 224 0 chr5 152411038 152411123 -126136 + Lx6 LINE L1 6778 6872 -588 5 1747 30542 92 4 6 chr5 152411132 152416345 -120914 + L1Md_F2 LINE L1 446 5586 -297 5 1747 7589 64 10 2 chr5 152416345 152417322 -119937 + L1Md_F2 LINE L1 5587 6571 -11 5 1747 22892 153 20 19 chr5 152417322 152422620 -114639 - L1_Mus4 LINE L1 -724 5912 613 5 1747 8393 163 20 1 chr5 152422674 152424302 -112957 - L1_Mur2 LINE L1 -759 5118 3461 5 1747 6623 85 22 25 chr5 152424300 152425279 -111980 - L1Md_F2 LINE L1 -12 6570 5594 5 1747 12543 127 17 24 chr5 152425277 152426301 -110958 - L1VL2 LINE L1 -434 3181 2144 5 1747 1018 111 0 0 chr5 152426301 152426436 -110823 + B1_Mus1 SINE Alu 1 135 -13 5 1747 891 53 0 0 chr5 152426437 152426550 -110709 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 5 1747 12543 155 42 23 chr5 152426550 152428610 -108649 - L1VL2 LINE L1 -1472 2143 54 5 1747 26777 70 2 1 chr5 152428628 152432361 -104898 + L1Md_F2 LINE L1 1850 5586 -297 5 1747 7806 48 23 0 chr5 152432361 152433333 -103926 + L1Md_F2 LINE L1 5587 6580 -2 5 1747 250 158 0 0 chr5 152433351 152433389 -103870 - Lx6 LINE L1 -1813 5647 5610 5 1747 1388 204 34 0 chr5 152433391 152433656 -103603 - ORR1B1 LTR MaLR -2 392 119 5 1747 2120 165 22 37 chr5 152433657 152434060 -103199 + RLTR11A LTR ERVK 5 401 -127 5 1747 4739 159 33 16 chr5 152434135 152435118 -102141 - L1_Mur2 LINE L1 -2836 3050 2052 5 1747 501 139 0 0 chr5 152435122 152435230 -102029 + (TG)n Simple_repeat Simple_repeat 2 109 0 5 1747 6355 159 17 4 chr5 152435252 152436479 -100780 + L1_Mur1 LINE L1 1243 2485 -3401 5 1747 1139 179 61 4 chr5 152436480 152436710 -100549 + Lx4A LINE L1 6814 7056 -2 5 1748 189 0 0 0 chr5 152437235 152437256 -100003 + (TA)n Simple_repeat Simple_repeat 1 21 0 5 1748 761 273 61 0 chr5 152438005 152438170 -99089 + B3A SINE B2 8 182 -16 5 1748 258 32 0 0 chr5 152438526 152438557 -98702 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1748 1096 215 18 0 chr5 152438804 152439023 -98236 - Lx7 LINE L1 -1248 6448 6226 5 1748 481 347 62 72 chr5 152439023 152439330 -97929 + RLTR25A LTR ERVK 1 304 -799 5 1748 3207 216 81 9 chr5 152439330 152440133 -97126 + Lx7 LINE L1 6450 7310 -386 5 1748 7921 55 4 11 chr5 152440796 152442565 -94694 - L1Md_F2 LINE L1 0 6582 4854 5 1748 370 256 8 107 chr5 152442567 152442638 -94621 - RLTR20D LTR ERVK -38 540 478 5 1748 522 0 0 0 chr5 152442638 152442696 -94563 + (GA)n Simple_repeat Simple_repeat 2 59 0 5 1748 370 256 8 107 chr5 152442696 152442755 -94504 - RLTR20D LTR ERVK -101 477 423 5 1748 758 285 58 25 chr5 152442745 152443019 -94240 - RLTR20D LTR ERVK -285 283 1 5 1748 821 243 291 6 chr5 152443128 152443490 -93769 + RMER5 LTR ERV1 70 534 0 5 1748 731 177 35 21 chr5 152444132 152444276 -92983 + B3 SINE B2 1 146 -70 5 1748 2250 234 48 48 chr5 152444280 152445256 -92003 - RMER13B LTR ERVK -8 900 1 5 1748 302 141 0 165 chr5 152445261 152445346 -91913 + B3 SINE B2 143 213 -3 5 1748 333 264 35 0 chr5 152446525 152446612 -90647 - B1F SINE Alu -13 136 47 5 1748 22 0 0 0 chr5 152446997 152447019 -90240 + AT_rich Low_complexity Low_complexity 1 22 0 5 1748 29 0 0 0 chr5 152448423 152448452 -88807 + AT_rich Low_complexity Low_complexity 1 29 0 5 1748 285 299 204 10 chr5 152449457 152449663 -87596 + B4A SINE B4 43 288 -4 5 1748 613 252 7 0 chr5 152449801 152449948 -87311 - B1_Mur3 SINE Alu 0 149 2 5 1748 21 0 0 0 chr5 152450753 152450774 -86485 + AT_rich Low_complexity Low_complexity 1 21 0 5 1748 447 19 0 0 chr5 152453551 152453603 -83656 + (TTCCC)n Simple_repeat Simple_repeat 1 52 0 5 1748 255 307 13 13 chr5 152454692 152454768 -82491 + MTEb LTR MaLR 5 80 -299 5 1748 621 197 0 41 chr5 152454768 152454890 -82369 + RLTR14-int LTR ERV1 1933 2049 -3268 5 1748 1246 237 23 13 chr5 152454858 152455197 -82062 + RLTR14-int LTR ERV1 2039 2267 -3050 5 1748 1947 121 9 13 chr5 152455198 152455516 -81743 + ORR1A4 LTR MaLR 5 321 -8 5 1748 5403 177 65 32 chr5 152455519 152456588 -80671 + RLTR14-int LTR ERV1 2262 3365 -1952 5 1748 514 169 126 60 chr5 152456574 152456674 -80585 + RLTR14-int LTR ERV1 4083 4188 -1129 5 1748 252 0 0 0 chr5 152456674 152456702 -80557 + (TG)n Simple_repeat Simple_repeat 1 28 0 5 1748 514 169 126 60 chr5 152456702 152456723 -80536 + RLTR14-int LTR ERV1 4189 4218 -1099 5 1748 4285 40 0 2 chr5 152456723 152457229 -80030 + L1Md_F3 LINE L1 6079 6583 -1 5 1748 514 169 126 60 chr5 152457229 152457257 -80002 + RLTR14-int LTR ERV1 4219 4242 -1075 5 1748 2652 65 21 0 chr5 152457260 152457600 -79659 - L1Md_F2 LINE L1 -459 6123 5777 5 1748 338 239 11 0 chr5 152457599 152457687 -79572 - L1_Rod LINE L1 -3843 2004 1916 5 1748 36395 53 1 4 chr5 152457689 152463783 -73476 + L1Md_T LINE L1 1 5589 -297 5 1748 8568 34 0 2 chr5 152463783 152464807 -72452 + L1Md_T LINE L1 5590 6585 0 5 1748 324 0 0 0 chr5 152464937 152464973 -72286 + (A)n Simple_repeat Simple_repeat 1 36 0 5 1748 1962 239 36 67 chr5 152464973 152465794 -71465 - L1_Rod LINE L1 -3918 1929 1126 5 1748 670 179 51 0 chr5 152466062 152466179 -71080 - ETnERV2-int LTR ERVK -214 7192 7070 5 1748 1478 312 45 17 chr5 152466182 152467032 -70227 - L1_Rod LINE L1 -6459 1149 465 5 1748 8246 187 41 28 chr5 152467451 152469778 -67481 - Lx2B LINE L1 -8 6992 4640 5 1748 2229 102 32 3 chr5 152469778 152470092 -67167 - ORR1A2 LTR MaLR 0 327 5 5 1748 8246 167 25 36 chr5 152470092 152470462 -66797 - Lx2B LINE L1 -1238 4639 4271 5 1748 5430 186 57 1 chr5 152470818 152471835 -65424 - Lx5 LINE L1 -373 6677 5604 5 1748 704 256 19 34 chr5 152471846 152471997 -65262 + Lx5 LINE L1 6082 6235 -815 5 1748 6372 49 41 5 chr5 152471997 152472777 -64482 + RLTR13C2 LTR ERVK 1 808 0 5 1748 704 256 19 34 chr5 152472777 152472831 -64428 + Lx5 LINE L1 6236 6284 -766 5 1748 744 180 29 7 chr5 152472855 152472995 -64264 - Lx5 LINE L1 -263 5614 5472 5 1748 1253 98 5 0 chr5 152472995 152473171 -64088 + MTB_Mm LTR MaLR 1 177 -230 5 1748 1562 100 25 4 chr5 152473171 152473411 -63848 - RLTR1B LTR ERV1 0 512 268 5 1748 570 62 12 0 chr5 152473411 152473492 -63767 - LTRIS3 LTR ERV1 0 512 431 5 1748 1544 98 68 12 chr5 152473521 152473770 -63489 - RLTR1B-int LTR ERV1 -3036 263 1 5 1748 2316 121 63 11 chr5 152473771 152474311 -62948 - RLTR1B LTR ERV1 -17 607 1 5 1748 887 123 0 153 chr5 152474326 152474528 -62731 - RLTR1B LTR ERV1 -207 305 135 5 1748 1650 86 0 0 chr5 152474610 152474842 -62417 + MTB LTR MaLR 169 400 0 5 1748 346 219 136 21 chr5 152474842 152474982 -62277 - Lx5 LINE L1 -401 5476 5321 5 1748 972 232 19 0 chr5 152475040 152475247 -62012 - B3 SINE B2 -5 211 1 5 1748 474 319 0 7 chr5 152476143 152476279 -60980 - B1F SINE Alu -14 135 1 5 1748 34640 72 8 5 chr5 152476416 152482165 -55094 + L1Md_F2 LINE L1 382 6144 -438 5 1748 4505 12 2 0 chr5 152482165 152482657 -54602 + MT2_Mm LTR ERVL 1 493 0 5 1748 41354 16 14 0 chr5 152482657 152487944 -49315 + MERVL-int LTR ERVL 1 5360 -125 5 1748 351 179 46 35 chr5 152487944 152488031 -49228 + ORR1A3-int LTR MaLR 553 640 -1323 5 1748 321 0 0 0 chr5 152488031 152488069 -49190 + MERVL-int LTR ERVL 5448 5485 0 5 1748 4505 12 2 0 chr5 152488069 152488561 -48698 + MT2_Mm LTR ERVL 1 493 0 5 1748 1917 66 0 36 chr5 152488561 152488812 -48447 + L1Md_F2 LINE L1 6140 6381 -201 5 1748 245 262 23 35 chr5 152488875 152488984 -48275 + MIR SINE MIR 64 171 -91 5 1748 480 167 117 27 chr5 152489168 152489279 -47980 - B1_Mur4 SINE Alu -19 131 11 5 1748 189 163 0 0 chr5 152489469 152489518 -47741 + C-rich Low_complexity Low_complexity 5 53 0 5 1748 346 94 31 0 chr5 152490066 152490130 -47129 + (TA)n Simple_repeat Simple_repeat 1 66 0 5 1748 412 262 186 23 chr5 152490220 152490349 -46910 + B3A SINE B2 1 152 -46 5 1748 252 0 0 0 chr5 152490367 152490395 -46864 + (CA)n Simple_repeat Simple_repeat 2 29 0 5 1748 939 243 0 10 chr5 152490425 152490633 -46626 + B3 SINE B2 3 208 -8 5 1748 549 189 61 35 chr5 152490790 152490905 -46354 + RSINE1 SINE B4 3 120 -45 5 1748 324 0 0 0 chr5 152490909 152490945 -46314 + (CA)n Simple_repeat Simple_repeat 1 36 0 5 1748 867 123 13 19 chr5 152491254 152491411 -45848 - RLTR31_Mur LTR ERVK -213 340 185 5 1748 705 82 24 8 chr5 152491411 152491563 -45696 - L1_Mus3 LINE L1 0 6638 6504 5 1748 1096 81 0 0 chr5 152491564 152491700 -45559 + L1_Mus3 LINE L1 6338 6473 -165 5 1748 1469 235 135 51 chr5 152491763 152492391 -44868 + RLTR40 LTR ERVK 88 768 -49 6 1748 4271 107 69 0 chr5 152493178 152493812 -43447 + RLTR33 LTR ERVK 1 678 0 6 1748 201 288 0 17 chr5 152494376 152494436 -42823 + (CA)n Simple_repeat Simple_repeat 2 60 0 6 1748 240 35 0 0 chr5 152494896 152494925 -42334 + (TTG)n Simple_repeat Simple_repeat 2 30 0 6 1748 606 244 183 19 chr5 152494934 152495147 -42112 + MTD LTR MaLR 172 419 0 6 1748 1832 57 176 19 chr5 152495153 152495420 -41839 - RLTR27 LTR ERVK 0 309 1 6 1748 938 286 31 50 chr5 152495890 152496173 -41086 + ORR1E LTR MaLR 5 284 -75 6 1748 1971 96 0 182 chr5 152496173 152496553 -40706 - RLTR10E LTR ERVK 0 311 1 6 1748 938 286 31 50 chr5 152496553 152496626 -40633 + ORR1E LTR MaLR 285 354 -5 6 1748 205 218 18 0 chr5 152496627 152496682 -40577 + T-rich Low_complexity Low_complexity 4 59 0 6 1748 236 254 149 0 chr5 152496928 152496995 -40264 - PB1D9 SINE Alu -10 110 34 6 1748 6954 171 53 20 chr5 152497655 152499128 -38131 - Lx5 LINE L1 -4 7046 5513 6 1748 541 176 110 81 chr5 152499127 152499263 -37996 - L1_Mur2 LINE L1 -6438 274 135 6 1748 809 158 175 0 chr5 152499262 152499406 -37853 - L1_Mur2 LINE L1 -3521 2356 2189 6 1748 324 48 0 0 chr5 152499406 152499448 -37811 + (CCCTAA)n Simple_repeat Simple_repeat 5 46 0 6 1748 809 158 175 0 chr5 152499448 152499480 -37779 - L1_Mur2 LINE L1 -3689 2188 2150 6 1748 1353 210 68 0 chr5 152499480 152499761 -37498 + RMER12B LTR ERVK 1 300 -1104 6 1748 842 172 152 39 chr5 152499770 152500000 -37259 + L1Md_F LINE L1 312 567 -5952 6 1748 4261 191 67 64 chr5 152500006 152501236 -36023 + L1Md_F LINE L1 1 1026 -5493 1 1748 1415 56 0 0 chr5 152501232 152501411 -35848 + L1Md_F2 LINE L1 6382 6560 -22 2 1748 10213 72 0 9 chr5 152501409 152502776 -34483 - L1_Mm LINE L1 -2895 2988 1634 3 1748 995 9 0 0 chr5 152502776 152502883 -34376 - U6 snRNA snRNA 0 107 1 4 1748 10213 72 0 9 chr5 152502883 152502894 -34365 - L1_Mm LINE L1 -4250 1633 1624 3 1748 3631 15 0 0 chr5 152503226 152503620 -33639 - MTA_Mm LTR MaLR -2 394 1 5 1748 9680 18 3 0 chr5 152503620 152504715 -32544 - MTA_Mm-int LTR MaLR 0 1098 1 5 1748 3613 18 0 0 chr5 152504717 152505111 -32148 - MTA_Mm LTR MaLR -2 394 1 5 1748 563 263 32 13 chr5 152505125 152505279 -31980 - RMER17B LTR ERVK 0 958 802 6 1748 1200 61 0 0 chr5 152505302 152505449 -31810 + B1_Mm SINE Alu 1 147 0 7 1748 887 171 0 6 chr5 152505449 152505618 -31641 + GA-rich Low_complexity Low_complexity 10 177 0 8 1748 512 302 44 59 chr5 152506901 152506943 -30316 + MLT1C LTR MaLR 200 243 -224 9 1748 2434 145 68 2 chr5 152506943 152507338 -29921 + MTC LTR MaLR 1 421 0 1 1748 512 302 44 59 chr5 152507338 152507566 -29693 + MLT1C LTR MaLR 244 466 -1 9 1748 240 342 0 0 chr5 152509734 152509807 -27452 + ID4 SINE ID 11 83 0 1 1748 425 42 27 27 chr5 152509829 152509903 -27356 + (TA)n Simple_repeat Simple_repeat 2 75 0 1 1748 374 39 19 0 chr5 152509964 152510016 -27243 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 1 1748 388 278 134 34 chr5 152510139 152510318 -26941 + B3A SINE B2 2 198 0 1 1748 363 355 97 35 chr5 152510448 152510676 -26583 - MLT1E2 LTR MaLR -35 592 351 1 1748 1858 114 3 87 chr5 152510844 152511200 -26059 - IAPLTR1a_Mm LTR ERVK -11 326 1 1 1748 2617 131 68 0 chr5 152511548 152511961 -25298 + BGLII_B LTR ERVK 1 441 0 1 1748 605 92 71 0 chr5 152512552 152512650 -24609 + RMER19A LTR ERVK 1 105 -632 1 1748 414 151 66 39 chr5 152512650 152512760 -24499 + B3A SINE B2 95 213 -3 1 1748 22 35 0 0 chr5 152512760 152512789 -24470 + AT_rich Low_complexity Low_complexity 1 29 0 2 1748 3565 158 122 74 chr5 152512877 152513726 -23533 + RMER19B LTR ERVK 1 890 -12 2 1748 1800 123 71 68 chr5 152513944 152514353 -22906 + RMER17C LTR ERVK 1 410 0 2 1748 268 176 29 0 chr5 152514638 152514706 -22553 + (TTA)n Simple_repeat Simple_repeat 3 72 0 2 1748 628 275 26 16 chr5 152515051 152515243 -22016 - MTD LTR MaLR -122 297 104 2 1748 214 267 16 32 chr5 152515527 152515589 -21670 - MIRm SINE MIR -128 148 88 2 1748 706 233 57 81 chr5 152515732 152515942 -21317 + B3 SINE B2 2 206 -10 2 1748 288 0 0 0 chr5 152515952 152515984 -21275 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2 1748 1110 73 0 0 chr5 152517494 152517631 -19628 + B1_Mm SINE Alu 1 137 -10 2 1748 1028 31 8 0 chr5 152517631 152517759 -19500 + (GA)n Simple_repeat Simple_repeat 2 130 0 2 1748 310 202 95 11 chr5 152517944 152518042 -19217 - Lx7 LINE L1 -1 7695 7603 3 1748 761 280 15 5 chr5 152518048 152518249 -19010 - Lx7 LINE L1 -432 7264 7062 3 1748 617 192 32 0 chr5 152518614 152518739 -18520 + B3A SINE B2 4 132 -66 3 1748 207 0 0 0 chr5 152518773 152518796 -18463 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 3 1748 29 28 0 0 chr5 152519654 152519690 -17569 + AT_rich Low_complexity Low_complexity 1 36 0 3 1748 1859 133 41 12 chr5 152520066 152520113 -17146 + RLTR15 LTR ERVK 1 48 -311 3 1748 1191 60 156 6 chr5 152520113 152520280 -16979 + B2_Mm1t SINE B2 2 193 0 3 1748 1859 133 41 12 chr5 152520280 152520575 -16684 + RLTR15 LTR ERVK 49 353 -6 3 1748 2632 77 3 11 chr5 152521203 152521557 -15702 + L1Md_F2 LINE L1 6230 6580 -2 3 1748 928 76 114 0 chr5 152521668 152521800 -15459 + B1_Mus2 SINE Alu 1 147 0 3 1748 340 300 92 0 chr5 152522032 152522152 -15107 + MER2 DNA MER2_type 12 142 -203 3 1748 754 276 69 51 chr5 152522174 152522324 -14935 + B4A SINE B4 1 165 -127 3 1748 3389 74 48 4 chr5 152522324 152522786 -14473 + RLTR45 LTR ERVK 1 482 0 4 1748 754 276 69 51 chr5 152522786 152522910 -14349 + B4A SINE B4 166 280 -12 3 1748 352 254 20 17 chr5 152522971 152523379 -13880 + (CA)n Simple_repeat Simple_repeat 1 409 0 4 1748 271 312 84 23 chr5 152523429 152523560 -13699 + MER2 DNA MER2_type 206 344 -1 3 1748 256 94 38 0 chr5 152523778 152523831 -13428 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 4 1748 1464 232 59 0 chr5 152524290 152524630 -12629 - MTD LTR MaLR -14 405 46 4 1748 22 35 0 0 chr5 152524745 152524774 -12485 + AT_rich Low_complexity Low_complexity 1 29 0 4 1748 746 234 52 28 chr5 152525143 152525354 -11905 - B3 SINE B2 0 216 1 4 1748 328 200 51 130 chr5 152525465 152525603 -11656 - MT2B LTR ERVL -305 296 170 4 1748 574 191 38 0 chr5 152525503 152525608 -11651 - B1_Mur1 SINE Alu -40 109 1 4 1748 359 270 43 43 chr5 152525682 152525798 -11461 + MLT1A LTR MaLR 252 367 -7 4 1748 401 325 16 0 chr5 152526030 152526153 -11106 + MLT1D LTR MaLR 10 134 -371 4 1748 225 65 0 0 chr5 152526182 152526213 -11046 + (TG)n Simple_repeat Simple_repeat 2 32 0 5 1748 787 282 118 17 chr5 152526221 152526510 -10749 - L1MD2 LINE L1 -211 6148 5831 5 1748 494 344 101 49 chr5 152526600 152527025 -10234 - MLT1E2 LTR MaLR -174 453 7 5 1748 3870 77 16 12 chr5 152527026 152527536 -9723 + RLTR1B LTR ERV1 1 512 0 5 1748 441 289 67 62 chr5 152527571 152527811 -9448 - L1ME2 LINE L1 -334 5830 5590 5 1748 331 287 11 0 chr5 152527999 152528086 -9173 - B3 SINE B2 0 216 129 5 1748 270 0 0 0 chr5 152528915 152528945 -8314 + (TG)n Simple_repeat Simple_repeat 1 30 0 5 1748 1685 243 57 60 chr5 152528945 152529220 -8039 + Lx8 LINE L1 6584 6866 -607 5 1748 4092 66 0 25 chr5 152529220 152529745 -7514 + RLTR1B LTR ERV1 1 512 0 5 1748 1685 243 57 60 chr5 152529745 152529998 -7261 + Lx8 LINE L1 6867 7110 -363 5 1748 2955 175 33 4 chr5 152530231 152530782 -6477 + RLTR25B LTR ERVK 1 567 -461 5 1748 377 210 121 62 chr5 152530782 152530961 -6298 + RLTR25B LTR ERVK 630 874 -229 5 1748 398 194 250 40 chr5 152531346 152531567 -5692 + RLTR25B LTR ERVK 742 1103 0 5 1748 1154 289 43 16 chr5 152532399 152532769 -4490 + Lx8 LINE L1 6927 7306 -167 6 1748 189 0 0 0 chr5 152533065 152533086 -4173 + (TG)n Simple_repeat Simple_repeat 2 22 0 6 1748 540 189 47 0 chr5 152533093 152533199 -4060 - B1_Mur4 SINE Alu -34 116 6 6 1748 230 227 30 0 chr5 152533208 152533274 -3985 - RMER1C Other Other 0 1342 1275 6 1748 661 169 0 53 chr5 152533329 152533517 -3742 + CT-rich Low_complexity Low_complexity 3 180 0 6 1748 511 298 113 16 chr5 152533589 152533783 -3476 - Lx8 LINE L1 -452 7021 6809 6 1748 265 233 28 37 chr5 152535185 152535292 -1967 + L1MB7 LINE L1 5267 5372 -802 6 1748 247 266 117 41 chr5 152535315 152535460 -1799 + L1MB7 LINE L1 5980 6135 -49 6 1748 1040 106 0 0 chr5 152535575 152535716 -1543 + B1_Mus2 SINE Alu 1 141 -6 6 1748 597 120 0 0 chr5 152535721 152535813 -1446 + (GAAA)n Simple_repeat Simple_repeat 4 95 0 6 1748 417 20 0 0 chr5 152535813 152535863 -1396 + (CAAGA)n Simple_repeat Simple_repeat 2 51 0 6 1748 1377 152 4 4 chr5 152535920 152536145 -1114 + URR1B DNA MER1_type 1 225 0 7 1748 421 100 0 0 chr5 152536481 152536541 -718 - ORR1A2 LTR MaLR -163 164 105 7 1748 267 200 0 16 chr5 152537020 152537081 -178 - MLT1A1 LTR MaLR -4 404 345 7 1748 1206 0 0 0 chr5 152537125 152537259 0 + (TTAGGG)n Simple_repeat Simple_repeat 5 138 0 7